Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAAAAAYYP	10	Unmodified	_AAAAAAAYYP_					0	0	0			REV__ENSG00000128713|ENST00000249504|HOXD11	REV__ENSG00000128713|ENST00000249504|HOXD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2334289550781	2	470.232168	938.449782	-0.53762	-0.00025281	3.4505	0.0016225	2.9129	0.0013697	470.2340403030759	31.714	0.3174	31.714	31.617	31.935	0					12	6	3	0	0	0	0.41345	1	11906	11906		54.765	10.234	1	112930	+		0	14524	0	0	0	0					-0.02190477027977522
AAAAAEPPFY	10	Unmodified	_AAAAAEPPFY_					0	0	0		IRS4|p.K843Ffs*9|1|0.05|ENSG00000133124|chrX:108733818-108733819|-/TATTACAAAA|frameshift_variant;IRS4|p.K843Pfs*106|1|0.02|ENSG00000133124|chrX:108733819-108733820|-/GA|frameshift_variant;IRS4|p.S1063Afs*9|1|0.36|ENSG00000133124|chrX:108733159-108733159|G/-|frameshift_variant;ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4	IRS4|p.K843Ffs*9|1|0.05|ENSG00000133124|chrX:108733818-108733819|-/TATTACAAAA|frameshift_variant	IRS4|p.K843Ffs*9|1|0.05|ENSG00000133124|chrX:108733818-108733819|-/TATTACAAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2459411621094	2	504.245275	1006.476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.644	1	39.644	39.144	40.144	0								0	0	0	0.37816	1	15682	15682		37.159	6.6555	1				1	3843	1	1	1	1					-0.026982078564856238
AAAAALQAK	9	Unmodified	_AAAAALQAK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7425537109375	2	407.742702	813.470852	0.98448	0.00040141	-1.1833	-0.0004825	-0.19887	-8.1087E-05	407.74220505063175	18.604	0.17918	18.604	18.516	18.695	0					8	4	3	0	0	0	0.099922	1	5485	5485		79.451	18.479	1	350240			2	6489	2	2	2	2					0.056655330715557284
AAAAALQAK	9	Unmodified	_AAAAALQAK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.74267578125	2	407.742702	813.470852	0.049648	2.0244E-05	-0.38407	-0.0001566	-0.33442	-0.00013636	407.74252687571095	18.569	0.16803	18.569	18.459	18.627	0					5	3	2	0	0	0	0.062676	1	5733	5733		90.777	8.4716	1	145980			3	6489	2	2	3	3					0.056655330715557284
AAAAALQAK	9	Unmodified	_AAAAALQAK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.74267578125	2	407.742702	813.470852	-0.55289	-0.00022544	0.66147	0.00026971	0.10858	4.4272E-05	407.74308355180136	18.53	0.11736	18.53	18.471	18.589	0					4	2	2	0	0	0	0.099922	1	5574	5574		79.451	18.479	1	316190			4	6489	2	2	4	4					0.056655330715557284
AAAAFALAAAP	11	Unmodified	_AAAAFALAAAP_					0	0	0			REV__ENST00000337304.2_1_22:39916672-39916864:+|nuORF	REV__ENST00000337304.2_1_22:39916672-39916864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7630920410156	2	472.763635	943.512717	-0.52052	-0.00024608	1.06	0.00050113	0.53949	0.00025505	472.7641708271104	28.008	0.25185	28.008	27.907	28.159	0					17	6	4	0	0	0	0.32083	1	9243	9243		60.294	1.512	1	192740	+		5	18420	3	3	5	5					0.038700887600725764
AAAAMNMPS	9	Oxidation (M)	_AAAAM(Oxidation (M))NMPS_		AAAAM(0.883)NM(0.117)PS		AAAAM(8.8)NM(-8.8)PS	0	0	1		nc|ENSG00000152192|Q01851-2|POU4F1;ENSG00000152192|ENST00000377208|POU4F1	nc|ENSG00000152192|Q01851-2|POU4F1	nc|ENSG00000152192|Q01851-2|POU4F1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.1886901855469	2	440.188588	878.362623	-1.0425	-0.00045888	0.25168	0.00011079	-0.7908	-0.0003481	440.1889469940895	25.73	0.50528	25.73	25.499	26.005	0					36	12	4	0	0	0	0.35045	1	8106	8106		45.952	12.436	2	802700			6	5000	4	4	6	6		205			-0.08142342565520266
AAAAPGRAL	9	Unmodified	_AAAAPGRAL_					0	0	0		ENST00000267984.3_1_15:81293571-81293748:+|nuORF	REV__ENST00000533080.5_1_11:44748805-44786009:+|nuORF	REV__ENST00000533080.5_1_11:44748805-44786009:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.2351379394531	2	399.235045	796.455536	0.074942	2.9919E-05	-0.54773	-0.00021867	-0.47278	-0.00018875	399.2348169374531	21.184	0.46376	21.184	21.028	21.492	0					28	9	5	0	0	0	0.11118	1	6949	6949		76.847	8.3619	1	11256000			7	8365	5	5	7	7					0.049166662743687084
AAAAPGRAL	9	Unmodified	_AAAAPGRAL_					0	0	0		ENST00000267984.3_1_15:81293571-81293748:+|nuORF	REV__ENST00000533080.5_1_11:44748805-44786009:+|nuORF	REV__ENST00000533080.5_1_11:44748805-44786009:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.2353820800781	2	399.235045	796.455536	0.18009	7.1897E-05	-0.4824	-0.00019259	-0.30231	-0.00012069	399.23484915510556	21.014	0.30502	21.014	20.927	21.232	0					16	7	3	0	0	0	0.043797	1	6000	6000		97.473	8.8298	1	776620			8	8365	5	5	8	8					0.049166662743687084
AAAAPGRAL	9	Unmodified	_AAAAPGRAL_					0	0	0		ENST00000267984.3_1_15:81293571-81293748:+|nuORF	REV__ENST00000533080.5_1_11:44748805-44786009:+|nuORF	REV__ENST00000533080.5_1_11:44748805-44786009:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.2350158691406	2	399.235045	796.455536	-0.61936	-0.00024727	0.22628	9.0341E-05	-0.39308	-0.00015693	399.23511929319534	21.15	0.56358	21.15	20.992	21.555	0					31	11	5	0	0	0	0.028654	1	6823	6823		110.34	21.694	1	10890000			9	8365	5	5	9	9					0.049166662743687084
AAAAPRAVA	9	Unmodified	_AAAAPRAVA_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.23492431640625	2	399.235045	796.455536	-0.13749	-5.4889E-05	-0.80496	-0.00032137	-0.94244	-0.00037626	399.2348490912307	21.025	0.17582	21.025	20.944	21.12	0					8	4	3	0	0	0	0.50461	1	6034	6034		31.955	0	1	142120			10	1840	6	6	10	10					0.049166662743687084
AAAAPTEL	8	Unmodified	_AAAAPTEL_					0	0	0		ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	ENSG00000198431|ENST00000525566|TXNRD1	ENSG00000198431|ENST00000525566|TXNRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.20159912109375	2	372.200336	742.386119	0.89482	0.00033305	3.3656	0.0012527	4.2604	0.0015857	372.2012630693163	31.614	0.90154	31.614	31.471	32.372	0					43	19	3	0	0	0	0.74117	1	11923	11923		28.254	2.8041	1	4681500			11	7560	7	7	11	11					0.004621625349614078
AAAATAAPGP	10	Unmodified	_AAAATAAPGP_					0	0	0			REV__ENSG00000163497|ENST00000295727|FEV	REV__ENSG00000163497|ENST00000295727|FEV	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.21148681640625	2	399.211235	796.407917	0.18039	7.2012E-05	0.37292	0.00014887	0.5533	0.00022088	399.21130242649474	19.897	0.32117	19.897	19.755	20.076	0					12	7	2	0	0	0	0.58896	1	5461	5461		35.618	2.1027	1	295130	+		12	15885	8	8	12	12					0.0015696728352168066
AAAAVAGVPV	10	Unmodified	_AAAAVAGVPV_					0	0	0		sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1;sp|F5HFA5|UL117_HCMVMProteinUL117OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL117PE=3SV=1	sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.24517822265625	2	413.245078	824.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.575	1	19.575	19.075	20.075	0								0	0	0	0.27548	1	5342	5342		54.765	0	1				13	22451	9	9	13	13					0.05634417214332643
AAAAVKVA	8	Unmodified	_AAAAVKVA_					0	0	0		tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.7212829589844	2	350.721239	699.427924	-0.82685	-0.00028999	0.826	0.0002897	-0.00084983	-2.9805E-07	350.72151209373664	34.452	0.21431	34.452	34.359	34.573	0					15	9	2	0	0	0	0.67475	1	11614	11614		37.028	0	1	157380			14	22855	10	10	14	14					0.0661876301413713
AAAAVSSAK	9	Unmodified	_AAAAVSSAK_					0	0	0		ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.21893310546875	2	388.21906	774.423567	0.16212	6.2939E-05	0.17085	6.6328E-05	0.33297	0.00012927	388.21891714218447	13.948	0.11852	13.948	13.889	14.007	0					4	2	2	0	0	0	0.20551	1	3524	3524		60.972	15.02	1	106480			15	4075	11	11	15	15					0.027332538005680362
AAAAVSSSK	9	Unmodified	_AAAAVSSSK_					0	0	0		nc|ENSG00000235927|Q8NBZ9|NEXN-AS1	nc|ENSG00000235927|Q8NBZ9|NEXN-AS1	nc|ENSG00000235927|Q8NBZ9|NEXN-AS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.2164001464844	2	396.216517	790.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.283	1	13.283	12.783	13.783	0								0	0	0	0.30504	1	3198	3198		34.173	5.023	1				16	11780	12	12	16	16					0.014889499379592053
AAAELQDR	8	Unmodified	_AAAELQDR_					0	0	0		nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.22454833984375	2	437.224874	872.435195	0.034841	1.5233E-05	-0.54504	-0.00023831	-0.5102	-0.00022307	437.22465370189826	14.436	0.40967	14.436	14.273	14.682	0					24	10	4	0	0	0	0.32815	1	3489	3489		79.451	0	1	620750			17	1228	13	13	17	17					-0.006125491761054036
AAAGAREAL	9	Unmodified	_AAAGAREAL_					0	0	0			REV__ENST00000400384.6_1_18:48086518-48189474:+|nuORF	REV__ENST00000400384.6_1_18:48086518-48189474:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.22998046875	2	415.229959	828.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.121	1	20.121	19.621	20.621	0								0	0	0	0.3368	1	5598	5598		27.882	2.3082	1		+		18	18944	14	14	18	18					0.024280585491396778
AAAGGAFRP	9	Unmodified	_AAAGGAFRP_					0	0	0		ENST00000520854.1_1_7:27181456-27182390:-|nuORF;ENSG00000106004|ENST00000222726|HOXA5	ENST00000520854.1_1_7:27181456-27182390:-|nuORF	ENST00000520854.1_1_7:27181456-27182390:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.2184753417969	2	409.219395	816.424236	0.63294	0.00025901	-3.5527	-0.0014538	-2.9198	-0.0011948	409.21742709790226	22.298	0.17734	22.298	22.19	22.368	0					7	5	2	0	0	0	0.11118	1	6287	6287		76.847	0	1	41459			19	2413	15	15	19	19					0.008680932402739927
AAAGGAFRP	9	Unmodified	_AAAGGAFRP_					0	0	0		ENST00000520854.1_1_7:27181456-27182390:-|nuORF;ENSG00000106004|ENST00000222726|HOXA5	ENST00000520854.1_1_7:27181456-27182390:-|nuORF	ENST00000520854.1_1_7:27181456-27182390:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.21954345703125	2	409.219395	816.424236	-1.4119	-0.00057777	1.676	0.00068583	0.26406	0.00010806	409.22001718579287	22.294	0.25052	22.294	22.228	22.479	0					9	7	2	0	0	0	0.068692	1	6552	6552		88.643	0	1	67832			20	2413	15	15	20	20					0.008680932402739927
AAAGPGDPK	9	Unmodified	_AAAGPGDPK_					0	0	0		ENSG00000123144|ENST00000242784|TRIR	ENSG00000123144|ENST00000242784|TRIR	ENSG00000123144|ENST00000242784|TRIR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.203125	2	392.20341	782.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.176	1	14.176	13.676	14.676	0								0	0	0	0.30504	1	3398	3398		34.173	2.2177	1				21	3303	16	16	21	21					-0.007633192335333661
AAAGPSCALK	10	Carbamidomethyl (C)	_AAAGPSC(Carbamidomethyl (C))ALK_	AAAGPSC(1)ALK		AAAGPSC(43)ALK		0	1	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.24462890625	2	473.244752	944.474951	-1.5506	-0.00073379	0.09896	4.6832E-05	-1.4516	-0.00068696	473.24525873444037	20.392	0.24279	20.392	20.26	20.503	0					16	7	3	0	0	0	0.52275	1	5666	5666		42.864	6.4175	1	108480			22	3453	17	17	22	22	144				0.0004925450296013878
AAAGPSCALK	10	Carbamidomethyl (C)	_AAAGPSC(Carbamidomethyl (C))ALK_	AAAGPSC(1)ALK		AAAGPSC(53)ALK		0	1	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7457275390625	2	473.244752	944.474951	0.66529	0.00031484	-1.4279	-0.00067574	-0.7626	-0.0003609	473.24410038994745	20.613	0.41493	20.613	20.328	20.743	0					29	8	5	0	0	0	0.43008	1	6600	6600		52.937	6.9847	1	717150			23	3453	17	17	23	23	144				0.0004925450296013878
AAAGQQVPGF	10	Unmodified	_AAAGQQVPGF_					0	0	0		ENSG00000204463|ENST00000676615|BAG6	ENSG00000204463|ENST00000676615|BAG6	ENSG00000204463|ENST00000676615|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2445373535156	2	473.243067	944.47158	0.66529	0.00031484	2.1335	0.0010097	2.7988	0.0013245	473.24410038994745	20.613	0.41493	20.613	20.328	20.743	0					29	8	5	0	0	0	0.4943	1	6577	6577		45.952	1.5748	1	717150			24	7703	18	18	24	24					-0.0028767227937578355
AAAGVAAR	8	Unmodified	_AAAGVAAR_					0	0	0			REV__ENST00000403734.2_1_11:62494359-62494803:-|nuORF	REV__ENST00000403734.2_1_11:62494359-62494803:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.7005310058594	2	343.700838	685.387122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.185	1	30.185	29.685	30.685	0								0	0	0	1.7419	1	11257	11257		23.037	0	1		+		25	18960	19	19	25	25					0.031844216945046355
AAAIKALEL	9	Unmodified	_AAAIKALEL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;UBE3A|p.N105Tfs*7|1|0.35|ENSG00000114062|chr15:25375523-25375523|G/-|frameshift_variant;UBE3A|p.K226Nfs*2|1|0.34|ENSG00000114062|chr15:25371505-25371505|T/-|frameshift_variant	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.77972412109375	2	450.28166	898.548768	0.87573	0.00039433	-2.0224	-0.00091063	-1.1466	-0.0005163	450.2809472897241	39.368	0.63974	39.368	39.157	39.796	0					23	14	2	0	0	0	0.25716	1	15696	15696		54.776	6.8607	1	521230			26	2833	20	20	26	26					0.09543545936935516
AAAKEAKKP	9	Unmodified	_AAAKEAKKP_					0	0	0			REV__AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant	REV__AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.27716064453125	2	457.276909	912.539266	-0.14915	-6.8204E-05	-0.038174	-1.7456E-05	-0.18733	-8.566E-05	457.27684132399696	14.951	0.21382	14.951	14.797	15.011	0					8	4	2	0	0	0	0.087861	1	3976	3976		82.241	7.1972	1	277350	+		27	12101	21	21	27	27					0.07949777651424483
AAAKEAKKP	9	Unmodified	_AAAKEAKKP_					0	0	0			REV__AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant	REV__AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2765197753906	2	457.276909	912.539266	-0.43501	-0.00019892	-0.29956	-0.00013698	-0.73456	-0.0003359	457.2767502143351	14.919	0.26679	14.919	14.711	14.978	0					8	5	2	0	0	0	0.11898	1	3806	3806		75.043	2.1641	1	332130	+		28	12101	21	21	28	28					0.07949777651424483
AAAKPSPLR	9	Unmodified	_AAAKPSPLR_					0	0	0			REV__ENST00000558383.1_1_15:45392246-45393102:-|nuORF	REV__ENST00000558383.1_1_15:45392246-45393102:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.7770080566406	2	455.777077	909.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.405	1	34.405	33.905	34.905	0								0	0	0	0.36266	1	12814	12814		21.96	0.25755	1		+		29	20269	22	22	29	29					0.08121197371281141
AAAKPTPPK	9	Unmodified	_AAAKPTPPK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7660217285156	2	440.766178	879.517802	-0.34945	-0.00015402	0.13738	6.0554E-05	-0.21206	-9.347E-05	440.7662499956198	14.691	0.44498	14.691	14.289	14.734	0					19	11	2	0	0	0	0.10506	1	3642	3642		78.264	17.292	1	227370			30	5298	23	23	30	30					0.07322392622700136
AAAKPTPPK	9	Unmodified	_AAAKPTPPK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7660827636719	2	440.766178	879.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.318	1	14.318	13.818	14.818	0								0	0	0	0.04624	1	3084	3084		87.696	32.192	1				31	5298	23	23	31	31					0.07322392622700136
AAAKPVATK	9	Unmodified	_AAAKPVATK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.76617431640625	2	428.766178	855.517802	-0.23767	-0.0001019	-0.058192	-2.4951E-05	-0.29586	-0.00012685	428.76617092537236	12.409	0.10264	12.409	12.354	12.457	0					9	6	2	0	0	0	0.025517	1	2355	2355		113.41	42.116	1	135230			32	5547	24	24	32	32					0.08426392622698131
AAAKPVATK	9	Unmodified	_AAAKPVATK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.7658996582031	2	428.766178	855.517802	-0.60667	-0.00026012	0.28939	0.00012408	-0.31727	-0.00013604	428.76630831979486	12.657	0.5152	12.657	12.563	13.078	0					40	15	5	0	0	0	0.0080613	1	2700	2700		145.16	70.112	1	15145000			33	5547	24	24	33	33					0.08426392622698131
AAALFTIHK	9	Unmodified	_AAALFTIHK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.28656005859375	2	486.287277	970.560001	0.011812	5.7441E-06	-0.91189	-0.00044344	-0.90008	-0.0004377	486.2868751042293	30.477	0.14751	30.477	30.391	30.539	0					12	5	3	0	0	0	0.1424	1	9712	9712		69.628	17.328	1	118370			34	1325	25	25	34	34					0.07354368031087688
AAALFTIHK	9	Unmodified	_AAALFTIHK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.5272521972656	3	324.527277	970.560001	0.28853	9.3636E-05	-0.34724	-0.00011269	-0.058712	-1.9054E-05	324.52707730619454	30.479	0.10926	30.479	30.391	30.501	0					7	4	2	0	0	0	0.53083	1	9719	9719		44.377	21.335	1	77900			35	1325	25	25	35	35					0.07354368031087688
AAALFTIHK	9	Unmodified	_AAALFTIHK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.5272521972656	3	324.527277	970.560001	0.53414	0.00017334	-0.40214	-0.00013051	0.132	4.2838E-05	324.52713701505496	30.738	0.27482	30.738	30.641	30.916	0					14	6	3	0	0	0	0.18605	1	11120	11120		69.628	35.455	1	857460			36	1325	25	25	36	36					0.07354368031087688
AAALFTIHK	9	Unmodified	_AAALFTIHK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.28692626953125	2	486.287277	970.560001	-0.29244	-0.00014221	-0.57138	-0.00027785	-0.86382	-0.00042006	486.2870001113257	30.742	0.31365	30.742	30.641	30.955	0					16	7	3	0	0	0	0.011031	1	11121	11121		138.83	80.044	1	654410			37	1325	25	25	37	37					0.07354368031087688
AAALFTIHK	9	Unmodified	_AAALFTIHK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2872009277344	2	486.287277	970.560001	-0.6859	-0.00033355	0.48902	0.0002378	-0.19689	-9.5743E-05	486.28744399002096	30.716	0.23725	30.716	30.617	30.854	0					8	5	2	0	0	0	0.0406	1	11525	11525		98.629	39.847	1	180870			38	1325	25	25	38	38					0.07354368031087688
AAALFTIHK	9	Unmodified	_AAALFTIHK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2862854003906	2	486.287277	970.560001	-2.9131	-0.0014166	2.2151	0.0010772	-0.69798	-0.00033942	486.2883162130697	30.54	0.23371	30.54	30.42	30.654	0					8	6	2	0	0	0	0.19605	1	10420	10420		62.107	23.301	1	83854			39	1325	25	25	39	39					0.07354368031087688
AAALFTIHK	9	Unmodified	_AAALFTIHK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2870178222656	2	486.287277	970.560001	2.5283	0.0012295	-3.9773	-0.0019341	-1.449	-0.00070465	486.28574507995205	30.732	0.32038	30.732	30.545	30.865	0					18	6	5	0	0	0	0.12239	1	11412	11412		74.255	18.751	1	873300			40	1325	25	25	40	40					0.07354368031087688
AAALLRSAAY	10	Unmodified	_AAALLRSAAY_					0	0	0			REV__ENSG00000155465|ENST00000674313|SLC7A7	REV__ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.19403076171875	3	336.194186	1005.56073	-0.70263	-0.00023622	0.62684	0.00021074	-0.07579	-2.548E-05	336.19434113090085	17.358	0.59565	17.358	17.235	17.831	0					36	19	2	0	0	0	0.67199	1	4316	4316		17.468	0	1	298380	+		41	15596	26	26	41	41					0.058171626801254206
AAALNVAPV	9	Unmodified	_AAALNVAPV_					0	0	0		ENST00000269228.9_1_18:21112001-21112103:-|nuORF	ENST00000269228.9_1_18:21112001-21112103:-|nuORF	ENST00000269228.9_1_18:21112001-21112103:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.244873046875	2	413.245078	824.475603	-0.41442	-0.00017126	0.19394	8.0144E-05	-0.22048	-9.1113E-05	413.24514932453013	19.733	0.16856	19.733	19.639	19.808	0					5	3	2	0	0	0	0.50461	1	6151	6151		31.955	4.0726	1	232360			42	8374	27	27	42	42					0.056344172143212745
AAALVLKAK	9	Unmodified	_AAALVLKAK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S677R|1|0.07|ENSG00000137076|chr9:35717753-35717753|T/G|missense_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.79986572265625	2	442.80002	883.585488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.175	1	22.175	21.675	22.675	0								0	0	0	0.28996	1	7466	7466		37.159	15.199	1				43	4144	28	28	43	43					0.13903842553497725
AAAPAGRAM	9	Unmodified	_AAAPAGRAM_					0	0	0		ENSG00000115525|ENST00000638572|ST3GAL5;ENST00000484728.6_2_2:86088279-86116028:-|nuORF	ENSG00000115525|ENST00000638572|ST3GAL5	ENSG00000115525|ENST00000638572|ST3GAL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.2137145996094	2	408.213255	814.411957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.518	1	18.518	18.018	19.018	0								0	0	0	0.34228	1	5433	5433		26.796	5.8492	1				44	2917	29	29	44	44					-0.002672664944270764
AAAPAGRAM	9	Unmodified	_AAAPAGRAM_					0	0	0		ENSG00000115525|ENST00000638572|ST3GAL5;ENST00000484728.6_2_2:86088279-86116028:-|nuORF	ENSG00000115525|ENST00000638572|ST3GAL5	ENSG00000115525|ENST00000638572|ST3GAL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.2131652832031	2	408.213255	814.411957	0.98891	0.00040369	-1.655	-0.0006756	-0.66611	-0.00027191	408.21285735383174	18.489	0.91938	18.489	17.896	18.816	0					36	21	3	0	0	0	0.32741	1	5427	5427		47.916	14.4	1	237470			45	2917	29	29	45	45					-0.002672664944270764
AAAPAGRAM	9	Unmodified	_AAAPAGRAM_					0	0	0		ENSG00000115525|ENST00000638572|ST3GAL5;ENST00000484728.6_2_2:86088279-86116028:-|nuORF	ENSG00000115525|ENST00000638572|ST3GAL5	ENSG00000115525|ENST00000638572|ST3GAL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.2131652832031	2	408.213255	814.411957	0.050763	2.0722E-05	0.23058	9.4125E-05	0.28134	0.00011485	408.2133951134781	18.424	0.37156	18.424	18.156	18.527	0					15	7	3	0	0	0	0.32741	1	5659	5659		47.916	14.4	1	285890			46	2917	29	29	46	46					-0.002672664944270764
AAAPAGRAM	9	Unmodified	_AAAPAGRAM_					0	0	0		ENSG00000115525|ENST00000638572|ST3GAL5;ENST00000484728.6_2_2:86088279-86116028:-|nuORF	ENSG00000115525|ENST00000638572|ST3GAL5	ENSG00000115525|ENST00000638572|ST3GAL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.21319580078125	2	408.213255	814.411957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.455	1	18.455	17.955	18.955	0								0	0	0	0.28164	1	5528	5528		38.806	5.2906	1				47	2917	29	29	47	47					-0.002672664944270764
AAAPGSRSL	9	Unmodified	_AAAPGSRSL_					0	0	0		nc|ENSG00000290687|P0CG31|ZNF286B;ENSG00000240445|ENST00000395675|FOXO3B	nc|ENSG00000290687|P0CG31|ZNF286B	nc|ENSG00000290687|P0CG31|ZNF286B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.2298889160156	2	415.229959	828.445365	1.0251	0.00042565	-1.2942	-0.00053739	-0.26909	-0.00011173	415.22956506011843	20.234	0.21689	20.234	20.077	20.294	0					10	4	3	0	0	0	0.51991	1	6407	6407		30.318	1.1682	1	426080			48	11830	30	30	48	48					0.024280585491396778
AAAPKAKH	8	Unmodified	_AAAPKAKH_					0	0	0			REV__ENST00000497543.5_1_3:75471615-75471942:-|nuORF	REV__ENST00000497543.5_1_3:75471615-75471942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	397.2376708984375	2	397.237587	792.460622	-0.074271	-2.9503E-05	0.070468	2.7993E-05	-0.0038026	-1.5105E-06	397.2376487678375	22.045	0.22158	22.045	21.906	22.127	0					9	6	2	0	0	0	0.75243	1	6168	6168		26.796	0	1	112220	+		49	19787	31	31	49	49					0.05608970136984226
AAAPKATPV	9	Unmodified	_AAAPKATPV_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2449035644531	2	413.245078	824.475603	0.060762	2.5109E-05	-0.020757	-8.5775E-06	0.040005	1.6532E-05	413.24495477221467	19.733	0.11608	19.733	19.676	19.792	0					6	2	3	0	0	0	0.33044	1	6299	6299		47.657	3.1263	1	311990			50	3645	32	32	50	50					0.05634417214332643
AAAPTSKAK	9	Unmodified	_AAAPTSKAK_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2;ENST00000461054.1_1_1:110590211-110590492:+|nuORF;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000473429.5_1_1:110584363-110592127:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1	nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENST00000485775.5_1_1:110582506-110596531:+|nuORF	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7479248046875	2	422.747985	843.481417	0.37766	0.00015966	-0.57003	-0.00024098	-0.19237	-8.1324E-05	422.747712148011	11.424	0.13561	11.424	11.329	11.465	0					11	4	3	0	0	0	0.16806	1	2315	2315		65.465	10.689	1	1314300			51	3549;4524	33	33	51	51					0.053415157259905754
AAAPVCSSK	9	Unmodified	_AAAPVCSSK_					0	0	0		CREBRF|p.M279Wfs*22|1|0.35|ENSG00000164463|chr5:173091005-173091005|A/-|frameshift_variant;nc|ENSG00000164463|Q8IUR6-2|CREBRF;ENST00000520464.1_1_5:172507634-172535847:+|nuORF;ENSG00000164463|ENST00000296953|CREBRF;nc|ENSG00000164463|Q8IUR6-3|CREBRF	CREBRF|p.M279Wfs*22|1|0.35|ENSG00000164463|chr5:173091005-173091005|A/-|frameshift_variant	CREBRF|p.M279Wfs*22|1|0.35|ENSG00000164463|chr5:173091005-173091005|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.2132568359375	2	417.212921	832.411288	0.47917	0.00019992	-0.044344	-1.8501E-05	0.43483	0.00018142	417.2129337365441	16.217	0.14575	16.217	16.118	16.264	0					6	3	2	0	0	0	0.36892	1	4339	4339		44.377	19.873	1	110310			52	693	34	34	52	52					-0.011621059341223372
AAAQHFTAL	9	Unmodified	_AAAQHFTAL_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2;SHROOM2|p.Q1179Rfs*3|1|0.46|ENSG00000146950|chrX:9932813-9932813|C/-|frameshift_variant	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2455139160156	2	465.245609	928.476666	-0.82806	-0.00038525	-0.27535	-0.00012811	-1.1034	-0.00051336	465.24554767197463	30.376	0.23132	30.376	30.278	30.509	0					13	7	3	0	0	0	0.22837	1	9967	9967		58.23	8.2054	1	77935			53	4757	35	35	53	53					0.009566315832216787
AAAQNAIKK	9	Unmodified	_AAAQNAIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.77423095703125	2	457.774534	913.534515	-0.40144	-0.00018377	-0.43631	-0.00019973	-0.83775	-0.0003835	457.77436553538456	13.918	0.11362	13.918	13.864	13.978	0					8	5	2	0	0	0	0.077948	1	2797	2797		85.359	27.548	1	162500			54	4144;6333	36	36	54	54					0.07428893508654255
AAAQNAIKK	9	Unmodified	_AAAQNAIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7745666503906	2	457.774534	913.534515	-0.63212	-0.00028937	0.64345	0.00029456	0.01133	5.1864E-06	457.77481186139295	14.259	0.1666	14.259	14.172	14.338	0					7	4	2	0	0	0	0.0074068	1	3440	3440		147.69	51.503	1	1145000			55	4144;6333	36	36	55	55					0.07428893508654255
AAAQNAIKK	9	Unmodified	_AAAQNAIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.774169921875	2	457.774534	913.534515	-0.64952	-0.00029733	0.47181	0.00021598	-0.1777	-8.1348E-05	457.7747627943113	14.209	0.11059	14.209	14.107	14.217	0					4	2	2	0	0	0	0.023949	1	3626	3626		115.46	26.816	1	91810			56	4144;6333	36	36	56	56					0.07428893508654255
AAAQNAIKK	9	Unmodified	_AAAQNAIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7742614746094	2	457.774534	913.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.208	1	14.208	13.708	14.708	0								0	0	0	0.012934	1	3482	3482		106.42	12.409	1				57	4144;6333	36	36	57	57					0.07428893508654255
AAAQVAHQK	9	Unmodified	_AAAQVAHQK_					0	0	0		ENSG00000112977|ENST00000230895|DAP	ENSG00000112977|ENST00000230895|DAP	ENSG00000112977|ENST00000230895|DAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.25640869140625	2	462.256508	922.498464	-0.72085	-0.00033322	0.44412	0.0002053	-0.27673	-0.00012792	462.256680869987	12.268	0.061502	12.268	12.237	12.298	0					4	2	2	0	0	0	0.015338	1	2550	2550		129.68	35.676	1	170530			58	2772	37	37	58	58					0.03411436331805362
AAAQVAHQK	9	Unmodified	_AAAQVAHQK_					0	0	0		ENSG00000112977|ENST00000230895|DAP	ENSG00000112977|ENST00000230895|DAP	ENSG00000112977|ENST00000230895|DAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.25634765625	2	462.256508	922.498464	-0.93488	-0.00043215	0.20828	9.628E-05	-0.72659	-0.00033587	462.2566157687048	12.34	0.12971	12.34	12.254	12.384	0					7	3	3	0	0	0	0.015338	1	2741	2741		129.68	38.906	1	382280			59	2772	37	37	59	59					0.03411436331805362
AAASEAETQ	9	Unmodified	_AAASEAETQ_					0	0	0			REV__PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant	REV__PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.19891357421875	2	439.198522	876.38249	0.2689	0.0001181	0.53979	0.00023707	0.80869	0.00035517	439.19877761688605	20.746	0.64883	20.746	20.459	21.108	0					32	20	2	0	0	0	0.30951	1	5706	5706		49.442	8.0149	1	174730	+		60	13979	38	38	60	60					-0.06064552029567949
AAASGGLLK	9	Unmodified	_AAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.2367248535156	2	394.237253	786.459953	0.89604	0.00035325	-2.2146	-0.00087309	-1.3186	-0.00051984	394.2361306705342	22.972	0.48106	22.972	22.887	23.369	0					19	11	3	0	0	0	0.0792	1	7535	7535		84.916	5.4645	1	540380			61	6530	39	39	61	61					0.058181306972869606
AAASGGLLK	9	Unmodified	_AAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.2371826171875	2	394.237253	786.459953	0.11484	4.5273E-05	-0.12555	-4.9496E-05	-0.010711	-4.2227E-06	394.23718192644475	22.87	0.21793	22.87	22.76	22.978	0					6	4	2	0	0	0	0.037569	1	7812	7812		101.6	2.2258	1	349080			62	6530	39	39	62	62					0.058181306972869606
AAASGGLLK	9	Unmodified	_AAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.2370910644531	2	394.237253	786.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.728	1	22.728	22.228	23.228	0								0	0	0	0.15451	1	6820	6820		58.782	0	1				63	6530	39	39	63	63					0.058181306972869606
AAASIEEDKLR	11	Unmodified	_AAASIEEDKLR_					0	0	0			REV__ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	REV__ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.8223876953125	2	601.822409	1201.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.229	1	29.229	28.729	29.729	0								0	0	0	0.2671	1	10684	10684		56.434	8.4743	1		+		64	14738	40	40	64	64					0.03751576838226356
AAASLVQK	8	Unmodified	_AAASLVQK_					0	0	0			REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.2378234863281	2	394.237253	786.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.74	1	22.74	22.24	23.24	0								0	0	0	1.7419	1	6825	6825		82.305	5.5309	1		+		65	21127	41	41	65	65					0.05818130697275592
AAASLVQK	8	Unmodified	_AAASLVQK_					0	0	0			REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.2372131347656	2	394.237253	786.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.871	1	22.871	22.371	23.371	0								0	0	0	1.7419	1	7671	7671		84.916	0	1		+		66	21127	41	41	66	66					0.05818130697275592
AAASPVHLK	9	Unmodified	_AAASPVHLK_					0	0	0		BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant;BCL9|p.P1111Lfs*3|1|0.39|ENSG00000116128|chr1:147624005-147624005|G/-|frameshift_variant;BCL9|p.Q1162Rfs*115|2|0.28|ENSG00000116128|chr1:147624156-147624156|G/-|frameshift_variant;BCL9|p.Q1139Rfs*138|1|0.37|ENSG00000116128|chr1:147624089-147624089|C/-|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9	BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant	BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.26385498046875	2	447.263802	892.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.919	1	19.919	19.419	20.419	0								0	0	0	0.36609	1	5244	5244		20.947	1.587	1				67	291	42	42	67	67					0.06249508479947963
AAASTLVHK	9	Unmodified	_AAASTLVHK_					0	0	0		ENST00000453839.5_1_2:61002191-61018944:+|nuORF;ENST00000496283.5_1_2:61002191-61021341:+|nuORF;PAPOLG|p.T602Lfs*8|1|0.46|ENSG00000115421|chr2:60794000-60794000|C/-|frameshift_variant;PAPOLG|p.R682Kfs*18|2|0.34|ENSG00000115421|chr2:60794759-60794760|-/A|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG	ENST00000453839.5_1_2:61002191-61018944:+|nuORF	ENST00000453839.5_1_2:61002191-61018944:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.26177978515625	2	449.261259	896.507966	-1.181	-0.00053058	1.7728	0.00079644	0.59179	0.00026587	449.26206661217356	17.471	0.091702	17.471	17.413	17.505	0					5	3	2	0	0	0	0.011031	1	4387	4387		138.83	48.049	1	133530			68	2907	43	43	68	68					0.05557204617332445
AAASTLVHK	9	Unmodified	_AAASTLVHK_					0	0	0		ENST00000453839.5_1_2:61002191-61018944:+|nuORF;ENST00000496283.5_1_2:61002191-61021341:+|nuORF;PAPOLG|p.T602Lfs*8|1|0.46|ENSG00000115421|chr2:60794000-60794000|C/-|frameshift_variant;PAPOLG|p.R682Kfs*18|2|0.34|ENSG00000115421|chr2:60794759-60794760|-/A|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG	ENST00000453839.5_1_2:61002191-61018944:+|nuORF	ENST00000453839.5_1_2:61002191-61018944:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2613220214844	2	449.261259	896.507966	-0.26432	-0.00011875	0.5454	0.00024503	0.28108	0.00012628	449.2614686727947	17.505	0.13975	17.505	17.469	17.609	0					6	4	2	0	0	0	0.19605	1	4387	4387		62.107	19.711	1	105530			69	2907	43	43	69	69					0.05557204617332445
AAATATVLK	9	Unmodified	_AAATATVLK_					0	0	0		ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.2581481933594	2	423.258185	844.501818	-0.35181	-0.00014891	0.30893	0.00013076	-0.042883	-1.815E-05	423.2582835940953	22.198	0.21502	22.198	22.089	22.304	0					9	4	3	0	0	0	0.012231	1	7356	7356		136.27	45.667	1	741970			70	6483	44	44	70	70					0.07334686385809164
AAATPAIKK	9	Unmodified	_AAATPAIKK_					0	0	0		DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-1|DIDO1	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.7738342285156	2	435.774003	869.533452	-0.86494	-0.00037692	1.1005	0.00047955	0.23552	0.00010263	435.77442303423993	16.017	0.23844	16.017	15.865	16.104	0					15	9	2	0	0	0	0.17854	1	3741	3741		64.207	18.255	1	149610			71	787	45	45	71	71					0.09346679139753178
AAATSVIAR	9	Unmodified	_AAATSVIAR_					0	0	0			REV__nc|ENSG00000139364|Q14DG7|TMEM132B	REV__nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2534484863281	2	430.253434	858.492316	-0.5468	-0.00023526	0.29331	0.0001262	-0.25349	-0.00010906	430.25356444813355	28.483	0.20651	28.483	28.396	28.603	0					10	5	3	0	0	0	0.047412	1	10075	10075		96.19	5.8206	1	445840	+		72	15026	46	46	72	72					0.057409181002867626
AAATSVTLK	9	Unmodified	_AAATSVTLK_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.2554016113281	2	431.255643	860.496732	0.16375	7.0618E-05	-0.63784	-0.00027507	-0.47409	-0.00020446	431.25534586013083	18.91	0.153	18.91	18.826	18.979	0					11	4	3	0	0	0	0.17854	1	4785	4785		64.207	2.0999	1	577610	+		73	21237	47	47	73	73					0.06090382523188964
AAAVLGPHP	9	Unmodified	_AAAVLGPHP_					0	0	0			REV__nc|ENSG00000152192|Q01851-2|POU4F1	REV__nc|ENSG00000152192|Q01851-2|POU4F1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.73712158203125	2	416.73742	831.460287	-1.4181	-0.00059097	0.81913	0.00034136	-0.59896	-0.00024961	416.73771848214193	29.659	0.30118	29.659	29.511	29.812	0					24	11	3	0	0	0	0.60043	1	9653	9653		21.702	0	1	277230	+		74	15498	48	48	74	74					0.03781550417136259
AAAYPHTSL	9	Unmodified	_AAAYPHTSL_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE;RERE|p.Q899L|1|0.36|ENSG00000142599|chr1:8360811-8360811|T/A|missense_variant;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7369689941406	2	465.737617	929.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.6	1	27.6	27.1	28.1	0								0	0	0	0.20652	1	8525	8525		50.025	11.218	1				75	4499	49	49	75	75					-0.006870746536719707
AAAYPHTSL	9	Unmodified	_AAAYPHTSL_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE;RERE|p.Q899L|1|0.36|ENSG00000142599|chr1:8360811-8360811|T/A|missense_variant;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7373046875	2	465.737617	929.460681	-0.67561	-0.00031466	-0.0096691	-4.5033E-06	-0.68528	-0.00031916	465.73749084921747	27.921	0.31226	27.921	27.692	28.004	0					20	7	3	0	0	0	0.23186	1	9800	9800		57.811	19.005	1	585480			76	4499	49	49	76	76					-0.006870746536719707
AAAYPHTSL	9	Unmodified	_AAAYPHTSL_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE;RERE|p.Q899L|1|0.36|ENSG00000142599|chr1:8360811-8360811|T/A|missense_variant;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.73712158203125	2	465.737617	929.460681	-0.86708	-0.00040383	0.023094	1.0756E-05	-0.84399	-0.00039308	465.7375964194133	27.679	0.27396	27.679	27.495	27.769	0					17	9	2	0	0	0	0.32741	1	8827	8827		47.916	10.756	1	173180			77	4499	49	49	77	77					-0.006870746536719707
AAAYPHTSL	9	Unmodified	_AAAYPHTSL_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE;RERE|p.Q899L|1|0.36|ENSG00000142599|chr1:8360811-8360811|T/A|missense_variant;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.73736572265625	2	465.737617	929.460681	0.67156	0.00031277	-1.1852	-0.00055197	-0.5136	-0.0002392	465.7369313155261	27.909	0.31517	27.909	27.697	28.012	0					17	6	3	0	0	0	0.25109	1	10200	10200		55.504	21.989	1	722650			78	4499	49	49	78	78					-0.006870746536719707
AAAYPHTSL	9	Unmodified	_AAAYPHTSL_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE;RERE|p.Q899L|1|0.36|ENSG00000142599|chr1:8360811-8360811|T/A|missense_variant;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.73773193359375	2	465.737617	929.460681	-2.2893	-0.0010662	1.683	0.00078385	-0.60631	-0.00028238	465.7383357459293	27.711	0.30527	27.711	27.522	27.828	0					13	7	2	0	0	0	0.43426	1	9086	9086		38.806	1.647	1	137460			79	4499	49	49	79	79					-0.006870746536719707
AACCVVTKGI	10	Unmodified	_AACCVVTKGI_					0	0	0		ENST00000495718.5_1_1:59762794-59812023:+|nuORF	ENST00000495718.5_1_1:59762794-59812023:+|nuORF	ENST00000495718.5_1_1:59762794-59812023:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7508239746094	2	482.751356	963.488158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.553	1	20.553	20.053	21.053	0								0	0	0	0.39244	1	5522	5522		32.812	0.061884	1				80	10111	50	50	80	80					0.004953692907065488
AACNIYSTL	9	Unmodified	_AACNIYSTL_					0	0	0		nc|ENSG00000158467|Q96HN2-2|AHCYL2;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;TNPO3-AHCYL2|1|fusion;ENSG00000158467|ENST00000325006|AHCYL2	nc|ENSG00000158467|Q96HN2-2|AHCYL2	nc|ENSG00000158467|Q96HN2-2|AHCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2313232421875	2	478.23131	954.448068	0.65158	0.00031161	-0.824	-0.00039406	-0.17242	-8.2456E-05	478.23105793205355	45.221	0.12218	45.221	45.136	45.258	0					13	7	3	0	0	0	0.30951	1	17514	17514		49.442	1.5259	1	211290			81	11607	51	51	81	81					-0.03097854108204956
AACNIYSTL	9	Unmodified	_AACNIYSTL_					0	0	0		nc|ENSG00000158467|Q96HN2-2|AHCYL2;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;TNPO3-AHCYL2|1|fusion;ENSG00000158467|ENST00000325006|AHCYL2	nc|ENSG00000158467|Q96HN2-2|AHCYL2	nc|ENSG00000158467|Q96HN2-2|AHCYL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2318420410156	2	478.23131	954.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.926	1	44.926	44.426	45.426	0								0	0	0	0.28996	1	15363	15363		37.159	5.2042	1				82	11607	51	51	82	82					-0.03097854108204956
AACSIALGK	9	Carbamidomethyl (C)	_AAC(Carbamidomethyl (C))SIALGK_	AAC(1)SIALGK		AAC(72)SIALGK		0	1	0		ENSG00000103043|ENST00000261776|VAC14;ENST00000566655.1_1_16:70820075-70820303:-|nuORF	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.7415466308594	2	445.741845	889.469137	-0.17388	-7.7504E-05	-0.23069	-0.00010283	-0.40457	-0.00018033	445.74170556220827	25.115	0.16619	25.115	25.056	25.222	0					5	3	2	0	0	0	0.13267	1	8888	8888		71.877	11.759	1	84343			83	2207	52	52	83	83	88				0.019981559913276215
AACSKYFKK	9	Carbamidomethyl (C)	_AAC(Carbamidomethyl (C))SKYFKK_	AAC(1)SKYFKK		AAC(60)SKYFKK		0	1	0		ZBTB7C|p.P321Lfs*18|4|0.42|ENSG00000184828|chr18:48040148-48040148|C/-|frameshift_variant;ZBTB7C|p.D132Tfs*90|4|0.39|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant;ENSG00000184828|ENST00000590800|ZBTB7C	ZBTB7C|p.P321Lfs*18|4|0.42|ENSG00000184828|chr18:48040148-48040148|C/-|frameshift_variant	ZBTB7C|p.P321Lfs*18|4|0.42|ENSG00000184828|chr18:48040148-48040148|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.1953430175781	3	368.19531	1101.5641	-0.20077	-7.3923E-05	0.3191	0.00011749	0.11832	4.3566E-05	368.19548641497045	16.996	0.167	16.996	16.94	17.107	0					8	3	3	0	0	0	0.21263	1	4834	4834		60.118	17.78	1	288730			84	23129	53	53	84	84	758				0.017380894624920984
AACSQYFKK	9	Carbamidomethyl (C)	_AAC(Carbamidomethyl (C))SQYFKK_	AAC(1)SQYFKK		AAC(48)SQYFKK		0	1	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.1835632324219	3	368.183181	1101.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.81	1	19.81	19.31	20.31	0								0	0	0	0.22284	1	5429	5429		47.657	13.736	1				85	6742	54	54	85	85	288				-0.018987874342428768
AACSQYFKK	9	Carbamidomethyl (C)	_AAC(Carbamidomethyl (C))SQYFKK_	AAC(1)SQYFKK		AAC(46)SQYFKK		0	1	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.1829833984375	3	368.183181	1101.52771	0.26736	9.8437E-05	-0.90694	-0.00033392	-0.63958	-0.00023548	368.18286072601614	19.987	0.16883	19.987	19.877	20.045	0					6	3	2	0	0	0	0.35021	1	6419	6419		45.972	14.442	1	485480			86	6742	54	54	86	86	288				-0.018987874342428768
AACSQYFKK	9	Carbamidomethyl (C)	_AAC(Carbamidomethyl (C))SQYFKK_	AAC(1)SQYFKK		AAC(120)SQYFKK		0	1	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7716674804688	2	551.771134	1101.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.975	1	19.975	19.475	20.475	0								0	0	0	0.0047356	1	6402	6402		115.49	27.74	1				87	6742	54	54	87	87	288				-0.018987874342428768
AADCAHEL	8	Carbamidomethyl (C)	_AADC(Carbamidomethyl (C))AHEL_	AADC(1)AHEL		AADC(63)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.6897888183594	2	443.68981	885.365066	0.23473	0.00010415	-0.68443	-0.00030368	-0.4497	-0.00019953	443.6894453229072	20.733	0.1665	20.733	20.636	20.802	0					8	5	2	0	0	0	0.46905	1	5596	5596		63.306	26.147	1	163780			88	5214	55	55	88	88	212				-0.08220170836216312
AADCAHEL	8	Carbamidomethyl (C)	_AADC(Carbamidomethyl (C))AHEL_	AADC(1)AHEL		AADC(71)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.689697265625	2	443.68981	885.365066	0.58399	0.00025911	-0.89347	-0.00039643	-0.30948	-0.00013731	443.6893975844982	21.056	0.34987	21.056	20.931	21.281	0					17	8	3	0	0	0	0.3961	1	6627	6627		71.296	7.9894	1	746060			89	5214	55	55	89	89	212				-0.08220170836216312
AADCAHEL	8	Carbamidomethyl (C)	_AADC(Carbamidomethyl (C))AHEL_	AADC(1)AHEL		AADC(63)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.6899719238281	2	443.68981	885.365066	3.1523	0.0013986	-2.3058	-0.001023	0.84653	0.0003756	443.6888461661625	20.722	0.10763	20.722	20.667	20.774	0					5	3	2	0	0	0	0.46905	1	5836	5836		63.306	24.5	1	35125			90	5214	55	55	90	90	212				-0.08220170836216312
AADCAHEL	8	Carbamidomethyl (C)	_AADC(Carbamidomethyl (C))AHEL_	AADC(1)AHEL		AADC(91)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.68963623046875	2	443.68981	885.365066	-0.23359	-0.00010364	-0.27333	-0.00012127	-0.50692	-0.00022492	443.6896956816876	20.938	0.21539	20.938	20.88	21.095	0					8	4	3	0	0	0	0.27512	1	6876	6876		90.777	16.802	1	428810			91	5214	55	55	91	91	212				-0.08220170836216312
AADCAHEL	8	Carbamidomethyl (C)	_AADC(Carbamidomethyl (C))AHEL_	AADC(1)AHEL		AADC(56)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.6898193359375	2	443.68981	885.365066	0.42573	0.00018889	-0.46375	-0.00020576	-0.03802	-1.6869E-05	443.6895615717861	20.828	0.10787	20.828	20.751	20.859	0					4	2	2	0	0	0	0.54629	1	5930	5930		55.504	22.692	1	51044			92	5214	55	55	92	92	212				-0.08220170836216312
AADCAHEL	8	Carbamidomethyl (C)	_AADC(Carbamidomethyl (C))AHEL_	AADC(1)AHEL		AADC(94)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.6895751953125	2	443.68981	885.365066	-0.48953	-0.0002172	-0.24594	-0.00010912	-0.73547	-0.00032632	443.6897290212445	20.951	0.21533	20.951	20.844	21.059	0					10	4	3	0	0	0	0.26534	1	6753	6753		94.006	25.522	1	820780			93	5214	55	55	93	93	212				-0.08220170836216312
AADCAHEL	8	Carbamidomethyl (C)	_AADC(Carbamidomethyl (C))AHEL_	AADC(1)AHEL		AADC(56)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.68951416015625	2	443.68981	885.365066	0.77119	0.00034217	-1.8252	-0.00080983	-1.054	-0.00046766	443.6891704994922	20.984	0.21838	20.984	20.875	21.093	0					9	4	3	0	0	0	0.54629	1	6773	6773		55.504	13.108	1	422900			94	5214	55	55	94	94	212				-0.08220170836216312
AADEKARKL	9	Unmodified	_AADEKARKL_					0	0	0		nc|ENSG00000114670|Q8NG66-4|NEK11;nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;ENSG00000114670|ENST00000383366|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.29010009765625	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.894	1	14.894	14.394	15.394	0								0	0	0	0.19847	1	3730	3730		27.882	0	1				95	11490	56	56	95	95					0.06628261191792717
AADEKARKL	9	Unmodified	_AADEKARKL_					0	0	0		nc|ENSG00000114670|Q8NG66-4|NEK11;nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;ENSG00000114670|ENST00000383366|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2906799316406	2	501.290548	1000.56654	1.1178	0.00056033	-1.182	-0.00059253	-0.064231	-3.2198E-05	501.29015847004865	14.802	0.11428	14.802	14.745	14.86	0					4	2	2	0	0	0	0.076532	1	3776	3776		69.628	20.186	1	356440			96	11490	56	56	96	96					0.06628261191792717
AADFGLAR	8	Unmodified	_AADFGLAR_					0	0	0		ENST00000507205.5_1_16:89759738-89759876:+|nuORF;ENST00000505733.5_1_16:89758861-89762180:+|nuORF	ENST00000507205.5_1_16:89759738-89759876:+|nuORF	ENST00000507205.5_1_16:89759738-89759876:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	410.71893310546875	2	410.719227	819.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.138	1	32.138	31.638	32.638	0								0	0	0	1.7419	1	10373	10373		31.955	1.4512	1				97	10187	57	57	97	97					0.006966735204287033
AADKRSKAL	9	Unmodified	_AADKRSKAL_					0	0	0		nc|ENSG00000156411|P56378-2|ATP5MJ;ENSG00000156411|ENST00000286953|ATP5MJ	nc|ENSG00000156411|P56378-2|ATP5MJ	nc|ENSG00000156411|P56378-2|ATP5MJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2849426269531	2	480.285266	958.555979	0.67432	0.00032387	-1.5104	-0.00072544	-0.83612	-0.00040158	480.28448319204233	13.467	0.37439	13.467	13.234	13.608	0					12	8	3	0	0	0	0.21263	1	3294	3294		60.118	16.001	1	997000			98	5170	58	58	98	98					0.0750427853738529
AADKRSKAL	9	Unmodified	_AADKRSKAL_					0	0	0		nc|ENSG00000156411|P56378-2|ATP5MJ;ENSG00000156411|ENST00000286953|ATP5MJ	nc|ENSG00000156411|P56378-2|ATP5MJ	nc|ENSG00000156411|P56378-2|ATP5MJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2861328125	2	480.285266	958.555979	-0.30416	-0.00014608	1.4436	0.00069335	1.1395	0.00054726	480.28603468684975	13.214	0.059448	13.214	13.182	13.241	0					6	3	2	0	0	0	0.55379	1	2646	2646		26.693	1.2427	1	47499			99	5170	58	58	99	99					0.0750427853738529
AADKRSKAL	9	Unmodified	_AADKRSKAL_					0	0	0		nc|ENSG00000156411|P56378-2|ATP5MJ;ENSG00000156411|ENST00000286953|ATP5MJ	nc|ENSG00000156411|P56378-2|ATP5MJ	nc|ENSG00000156411|P56378-2|ATP5MJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2848815917969	2	480.285266	958.555979	-2.9248	-0.0014047	2.3304	0.0011193	-0.59439	-0.00028547	480.2862298280243	13.231	0.07676	13.231	13.194	13.271	0					6	4	2	0	0	0	0.37197	1	2644	2644		44.117	17.321	1	68133			100	5170	58	58	100	100					0.0750427853738529
AADSETKKIIQ	11	Unmodified	_AADSETKKIIQ_					0	0	0			REV__ENSG00000186951|ENST00000407236|PPARA	REV__ENSG00000186951|ENST00000407236|PPARA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.3327026367188	2	602.33261	1202.65067	0.81278	0.00048956	-0.69375	-0.00041787	0.11903	7.1694E-05	602.3321313715852	31.614	0.29617	31.614	31.513	31.81	0					23	6	4	0	0	0	0.085907	1	11926	11926		93.143	1.878	1	5381400	+		101	17099	59	59	101	101					0.05744747498056313
AADSETKKIIQ	11	Unmodified	_AADSETKKIIQ_					0	0	0			REV__ENSG00000186951|ENST00000407236|PPARA	REV__ENSG00000186951|ENST00000407236|PPARA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.3326416015625	2	602.33261	1202.65067	0.46052	0.00027738	-0.5571	-0.00033556	-0.09658	-5.8173E-05	602.3322756940913	31.394	0.30183	31.394	31.303	31.604	0					11	7	2	0	0	0	0.12944	1	10795	10795		82.75	1.2255	1	702750	+		102	17099	59	59	102	102					0.05744747498056313
AAEAKWRR	8	Unmodified	_AAEAKWRR_					0	0	0		ENST00000394921.8_1_7:75157117-75157315:-|nuORF	ENST00000394921.8_1_7:75157117-75157315:-|nuORF	ENST00000394921.8_1_7:75157117-75157315:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2771911621094	2	494.277775	986.540997	-1.6059	-0.00079378	0.2722	0.00013454	-1.3337	-0.00065924	494.2780044220208	21.7	0.19288	21.7	21.588	21.781	0					11	5	3	0	0	0	0.59411	1	6260	6260		50.025	50.025	1	117630			103	9182	60	60	103	103					0.04718831460036199
AAEEGLREL	9	Unmodified	_AAEEGLREL_					0	0	0		ENST00000595279.1_1_19:3959101-3961233:-|nuORF;ENSG00000167657|ENST00000545797|DAPK3	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.25799560546875	2	494.258914	986.503274	-0.066757	-3.2995E-05	-2.8999	-0.0014333	-2.9667	-0.0014663	494.2583229905969	31.287	0.2037	31.287	31.173	31.377	0					16	8	3	0	0	0	0.34452	1	10037	10037		46.457	3.9823	1	59478			104	6013	61	61	104	104					0.009482756839133799
AAEEGLREL	9	Unmodified	_AAEEGLREL_					0	0	0		ENST00000595279.1_1_19:3959101-3961233:-|nuORF;ENSG00000167657|ENST00000545797|DAPK3	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2586669921875	2	494.258914	986.503274	-0.44961	-0.00022223	-1.8855	-0.00093193	-2.3351	-0.0011542	494.25850832928006	31.526	0.29405	31.526	31.402	31.696	0					15	7	3	0	0	0	0.21419	1	11493	11493		59.931	17.456	1	468660			105	6013	61	61	105	105					0.009482756839133799
AAEGFLNMQ	9	Unmodified	_AAEGFLNMQ_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.73065185546875	2	490.728935	979.443317	2.6752	0.0013128	0.30754	0.00015092	2.9828	0.0014637	490.72930227708923	30.222	0.30965	30.222	30.115	30.425	0					12	6	3	0	0	0	0.2873	1	11174	11174		51.335	3.4199	1	934980	+		106	21815	62	62	106	106					-0.0472273825097318
AAEKGVRTL	9	Unmodified	_AAEKGVRTL_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7802734375	2	472.779816	943.545079	0.91852	0.00043426	-0.36265	-0.00017145	0.55587	0.00026281	472.7796363488329	18.489	0.11258	18.489	18.409	18.522	0					7	4	2	0	0	0	0.10506	1	4601	4601		78.264	26.928	1	231950			107	2347	63	63	107	107					0.07104876163089102
AAEKGVRTL	9	Unmodified	_AAEKGVRTL_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7791442871094	2	472.779816	943.545079	-0.026123	-1.235E-05	-0.3668	-0.00017342	-0.39292	-0.00018577	472.7796914869749	18.476	0.082603	18.476	18.428	18.511	0					9	3	3	0	0	0	0.14578	1	4596	4596		68.846	15.495	1	278420			108	2347	63	63	108	108					0.07104876163089102
AAEKGVRTL	9	Unmodified	_AAEKGVRTL_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7795715332031	2	472.779816	943.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.792	1	18.792	18.292	19.292	0								0	0	0	0.023427	1	5561	5561		99.013	27.135	1				109	2347	63	63	109	109					0.07104876163089102
AAEKGVRTL	9	Unmodified	_AAEKGVRTL_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.77923583984375	2	472.779816	943.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.541	1	18.541	18.041	19.041	0								0	0	0	0.17415	1	4858	4858		54.722	11.858	1				110	2347	63	63	110	110					0.07104876163089102
AAEKGVRTL	9	Unmodified	_AAEKGVRTL_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7795104980469	2	472.779816	943.545079	-0.57479	-0.00027175	0.2416	0.00011422	-0.33318	-0.00015752	472.78000034205627	18.727	0.49112	18.727	18.621	19.112	0					18	10	4	0	0	0	0.017741	1	5669	5669		125.71	43.472	1	3995300			111	2347	63	63	111	111					0.07104876163089102
AAELEELQVER	11	Unmodified	_AAELEELQVER_					0	0	0			REV__ENSG00000108479|ENST00000588479|GALK1	REV__ENSG00000108479|ENST00000588479|GALK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.5580139160156	3	429.557741	1285.6514	1.016	0.00043643	-0.47032	-0.00020203	0.54568	0.0002344	429.55749947085974	22.08	0.81839	22.08	21.97	22.789	0					24	16	2	0	0	0	0.78699	1	7304	7304		17.833	0	1	833270	+		112	13876	64	64	112	112					0.01999542147086686
AAETDPHKS	9	Unmodified	_AAETDPHKS_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.22857666015625	2	478.227613	954.440674	-0.0093548	-4.4737E-06	1.9033	0.00091019	1.8939	0.00090572	478.2285556368789	24.617	0.35752	24.617	24.4	24.758	0					11	8	2	0	0	0	0.50858	1	7670	7670		31.53	1.2121	1	100310			113	3506	65	65	113	113					-0.038368703842706964
AAETTVEPSEE	11	Unmodified	_AAETTVEPSEE_					0	0	0			REV__nc|ENSG00000132780|P49321-4|NASP	REV__nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.7598876953125	2	581.75914	1161.50373	0.6009	0.00034958	2.0123	0.0011707	2.6132	0.0015202	581.7602896084153	26.572	0.12306	26.572	26.5	26.623	0					6	4	2	0	0	0	0.53842	1	8079	8079		41.427	4.9799	1	31129	+		114	14676	66	66	114	114					-0.07056394177539005
AAEWQTAC	8	Unmodified	_AAEWQTAC_					0	0	0			REV__HEY2|p.R164W|1|0.68|ENSG00000135547|chr6:125759278-125759278|C/T|missense_variant	REV__HEY2|p.R164W|1|0.68|ENSG00000135547|chr6:125759278-125759278|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.188232421875	2	440.186903	878.359253	2.6404	0.0011623	-0.17311	-7.62E-05	2.4673	0.0010861	440.1872071890902	25.942	0.64855	25.942	25.633	26.282	0					34	11	4	0	0	0	0.5676	1	9086	9086		53.351	5.4358	1	1742200	+		115	20744	67	67	115	115					-0.08479269347878926
AAEYSLNK	8	Unmodified	_AAEYSLNK_					0	0	0			REV__CDH16|p.K563Sfs*22|2|0.25|ENSG00000166589|chr16:66912003-66912003|G/-|frameshift_variant	REV__CDH16|p.K563Sfs*22|2|0.25|ENSG00000166589|chr16:66912003-66912003|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.22967529296875	2	448.229625	894.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.527	1	18.527	18.027	19.027	0								0	0	0	1.7419	1	4855	4855		30.504	1.3541	1		+		116	12395	68	68	116	116					-0.006747808905629427
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.7586364746094	2	506.758549	1011.50255	-0.084902	-4.3025E-05	-0.24409	-0.0001237	-0.329	-0.00016672	506.75837183801224	35.99	0.37592	35.99	35.891	36.267	0					44	18	4	0	0	0	0.44292	1	11783	11783		51.528	5.5555	1	927730			117	2200	69	69	117	117					-0.002745189651363944
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7580871582031	2	506.758549	1011.50255	-0.037057	-1.8779E-05	-0.52988	-0.00026852	-0.56694	-0.0002873	506.75820106634256	36.244	0.70148	36.244	36.123	36.824	0					37	19	4	0	0	0	0.13663	1	13643	13643		89.029	22.6	1	3821400			118	2200	69	69	118	118					-0.002745189651363944
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.7583923339844	2	506.758549	1011.50255	-0.67289	-0.00034099	0.54467	0.00027602	-0.12822	-6.4976E-05	506.7588226554685	36.05	0.40623	36.05	35.859	36.265	0					45	18	4	0	0	0	0.48965	1	12179	12179		46.457	2.0796	1	1186600			119	2200	69	69	119	119					-0.002745189651363944
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.7580261230469	2	506.758549	1011.50255	-0.58957	-0.00029877	-0.19058	-9.6578E-05	-0.78015	-0.00039535	506.75859969004676	36.059	0.30299	36.059	35.937	36.24	0					26	13	3	0	0	0	0.35046	1	12195	12195		61.691	17.574	1	226610			120	2200	69	69	120	120					-0.002745189651363944
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7586669921875	2	506.758549	1011.50255	-0.36588	-0.00018541	0.074474	3.7741E-05	-0.2914	-0.00014767	506.75861903560474	36.239	0.43329	36.239	36.13	36.564	0					18	12	2	0	0	0	0.31894	1	14083	14083		65.157	15.716	1	1498600			121	2200	69	69	121	121					-0.002745189651363944
AAFGGTFKK	9	Unmodified	_AAFGGTFKK_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;PLTP|p.H154R|1|0.38|ENSG00000100979|chr20:45909540-45909540|T/C|missense_variant;nc|ENSG00000100979|P55058-4|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7584228515625	2	463.758352	925.502152	-1.1535	-0.00053495	0.65718	0.00030477	-0.49633	-0.00023018	463.7586042991752	22.323	0.25549	22.323	22.249	22.505	0					14	7	3	0	0	0	0.13267	1	6540	6540		71.877	33.071	1	567100			122	2078	70	70	122	122					0.036421061056557846
AAFGGTFKK	9	Unmodified	_AAFGGTFKK_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;PLTP|p.H154R|1|0.38|ENSG00000100979|chr20:45909540-45909540|T/C|missense_variant;nc|ENSG00000100979|P55058-4|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7580871582031	2	463.758352	925.502152	-1.0337	-0.00047938	0.54214	0.00025142	-0.49153	-0.00022795	463.7585884146793	22.542	0.41064	22.542	22.434	22.845	0					15	8	4	0	0	0	0.010494	1	7630	7630		139.97	76.664	1	2929800			123	2078	70	70	123	123					0.036421061056557846
AAGAAGIL	8	Unmodified	_AAGAAGIL_					0	0	0		PSMC3IP|p.Q167Gfs*39|1|0.27|ENSG00000131470|chr17:42573350-42573351|-/CT|frameshift_variant;nc|ENSG00000131470|Q9P2W1-2|PSMC3IP;ENSG00000131470|ENST00000393795|PSMC3IP	PSMC3IP|p.Q167Gfs*39|1|0.27|ENSG00000131470|chr17:42573350-42573351|-/CT|frameshift_variant	PSMC3IP|p.Q167Gfs*39|1|0.27|ENSG00000131470|chr17:42573350-42573351|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.1935729980469	2	322.192314	642.370075	-0.024319	-7.8353E-06	4.0648	0.0013096	4.0405	0.0013018	322.1935161448473	24.431	0.1761	24.431	24.342	24.518	0					6	4	2	0	0	0	0.78431	1	7625	7625		10.185	0	1	87936			124	3721	71	71	124	124					0.03458501088709909
AAGAAMAAGLA	11	Unmodified	_AAGAAMAAGLA_					0	0	0			REV__nc|ENSG00000198814|P32189-1|GK	REV__nc|ENSG00000198814|P32189-1|GK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.72650146484375	2	437.726195	873.437837	0.2503	0.00010956	-0.632	-0.00027664	-0.3817	-0.00016708	437.72595152176325	19.641	0.28438	19.641	19.492	19.777	0					11	8	2	0	0	0	0.42078	1	5129	5129		50.025	5.9077	1	65707	+		125	17258	72	72	125	125					-0.0039441704279852274
AAGAAMAAGLA	11	Unmodified	_AAGAAMAAGLA_					0	0	0			REV__nc|ENSG00000198814|P32189-1|GK	REV__nc|ENSG00000198814|P32189-1|GK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.72613525390625	2	437.726195	873.437837	0.61278	0.00026823	-1.3053	-0.00057134	-0.69248	-0.00030312	437.72578964559295	20.023	0.37947	20.023	19.784	20.164	0					22	8	4	0	0	0	0.22425	1	6138	6138		71.378	0	1	549100	+		126	17258	72	72	126	126					-0.0039441704279852274
AAGAAMAAGLA	11	Unmodified	_AAGAAMAAGLA_					0	0	0			REV__nc|ENSG00000198814|P32189-1|GK	REV__nc|ENSG00000198814|P32189-1|GK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7262878417969	2	437.726195	873.437837	-0.94228	-0.00041246	0.56393	0.00024685	-0.37835	-0.00016561	437.7263517013209	19.717	0.26123	19.717	19.555	19.816	0					13	9	2	0	0	0	0.22425	1	5379	5379		71.378	21.353	1	88024	+		127	17258	72	72	127	127					-0.0039441704279852274
AAGAELLQR	9	Unmodified	_AAGAELLQR_					0	0	0		ENST00000471864.1_1_9:38621862-38622117:+|nuORF;nc|ENSG00000204860|Q5SY85|FAM201A	ENST00000471864.1_1_9:38621862-38622117:+|nuORF	ENST00000471864.1_1_9:38621862-38622117:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.763916015625	2	464.764166	927.513779	-2.3311	-0.0010834	0.54432	0.00025298	-1.7867	-0.00083041	464.76493128925415	16.415	0.38095	16.415	16.285	16.666	0					31	10	4	0	0	0	0.51817	1	3858	3858		30.504	1.3336	1	630250			128	9858	73	73	128	128					0.04712303128997064
AAGAGKVTK	9	Unmodified	_AAGAGKVTK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.7427062988281	2	401.742702	801.470852	0.88163	0.00035419	-1.2433	-0.00049951	-0.36172	-0.00014532	401.7421877995393	12.021	0.11316	12.021	11.954	12.068	0					8	3	3	0	0	0	0.037924	1	2602	2602		101.25	40.281	1	592450			129	5177;8845	74	74	129	129					0.062175330715604105
AAGASKRDSQ	10	Unmodified	_AAGASKRDSQ_					0	0	0		ENST00000388712.7_2_9:88694245-88714458:-|nuORF	ENST00000388712.7_2_9:88694245-88714458:-|nuORF	ENST00000388712.7_2_9:88694245-88714458:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7532653808594	2	495.751787	989.489021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.475	1	19.475	18.975	19.975	0								0	0	0	0.4201	1	5044	5044		22.58	1.6327	1				130	9132	75	75	130	130					-0.00614376744385936
AAGGCQVLV	9	Unmodified	_AAGGCQVLV_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.21539306640625	2	409.215463	816.416374	1.6222	0.00066381	-1.2761	-0.00052219	0.34609	0.00014162	409.214978550805	21.883	0.32645	21.883	21.724	22.051	0					13	9	2	0	0	0	0.39123	1	6060	6060		42.474	1.6963	1	98494	+		131	13075	76	76	131	131					0.0008219792849786245
AAGGGWGL	8	Unmodified	_AAGGGWGL_					0	0	0			REV__ENST00000324015.7_1_17:1657834-1658029:+|nuORF	REV__ENST00000324015.7_1_17:1657834-1658029:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.54510498046875	2	344.674289	687.334024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.584	1	21.584	21.084	22.084	0								0	0	0	1.7419	1	6882	6882		16.705	0	1		+		132	18344	77	77	132	132					-0.02214956088141662
AAGPPAVLSKP	11	Unmodified	_AAGPPAVLSKP_					0	0	0			REV__ENST00000486209.5_1_22:21827366-21827621:-|nuORF	REV__ENST00000486209.5_1_22:21827366-21827621:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.611	1	28.611	28.111	29.111	0								0	0	0	0.4303	1	10129	10129		33.039	11.354	1		+		133	19663	78	78	133	133					0.07810333339944009
AAGPSCALK	9	Unmodified	_AAGPSCALK_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.21539306640625	2	409.215463	816.416374	0.99561	0.00040742	-1.3537	-0.00055394	-0.35805	-0.00014652	409.21510319398635	22.212	1.1855	22.212	21.96	23.145	0					67	28	5	0	0	0	0.10915	1	7130	7130		77.318	31.345	1	4759400			134	3453	79	79	134	134					0.0008219792849786245
AAGPSCALK	9	Unmodified	_AAGPSCALK_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.2152404785156	2	409.215463	816.416374	0.052773	2.1595E-05	-0.79168	-0.00032397	-0.7389	-0.00030237	409.2152709097869	22.092	1.0026	22.092	21.825	22.828	0					54	20	5	0	0	0	0.19605	2	7381	7381;7553		62.107	2.9709	1	4605300			135	3453	79	79	135;136	135					0.0008219792849786245
AAGPSCALK	9	Unmodified	_AAGPSCALK_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.2153625488281	2	409.215463	816.416374	-0.51299	-0.00020992	0.1149	4.7021E-05	-0.39809	-0.0001629	409.21562238969017	22.097	1.2132	22.097	21.84	23.053	0					55	24	4	0	0	0	0.15163	1	7259	7259		67.494	1.6905	1	6800400			136	3453	79	79	137	137					0.0008219792849786245
AAGPSLSH	8	Unmodified	_AAGPSLSH_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.19024658203125	2	370.190303	738.366053	-0.24956	-9.2384E-05	0.11544	4.2735E-05	-0.13412	-4.9648E-05	370.19034571579823	19.301	0.2636	19.301	19.145	19.409	0					11	5	3	0	0	0	0.25485	1	5955	5955		97.473	39.661	1	222150			137	3782	80	80	138	138					-0.013595884050005225
AAGPTKPAA	9	Unmodified	_AAGPTKPAA_					0	0	0		ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.22137451171875	2	392.221603	782.428653	0.13056	5.121E-05	-0.36675	-0.00014385	-0.23619	-9.2637E-05	392.2214815878185	17.595	0.21869	17.595	17.449	17.668	0					7	4	2	0	0	0	0.47038	1	5271	5271		35.618	0	1	99409			138	2158	81	81	139	139					0.02873557663167503
AAGPVSQGK	9	Unmodified	_AAGPVSQGK_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.724365234375	2	407.72451	813.434466	1.1828	0.00048227	-1.2428	-0.00050672	-0.059964	-2.4449E-05	407.72383662952836	14.368	0.3288	14.368	14.267	14.596	0					14	7	3	0	0	0	0.1424	1	3726	3726		69.628	32.469	1	344720			139	2019	82	82	140	140					0.02028656174866228
AAGPVSQGK	9	Unmodified	_AAGPVSQGK_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.72412109375	2	407.72451	813.434466	0.73481	0.0002996	-0.97134	-0.00039604	-0.23653	-9.6438E-05	407.72397858975785	14.35	0.21774	14.35	14.239	14.457	0					7	4	2	0	0	0	0.4966	1	3563	3563		32.812	2.3088	1	140470			140	2019	82	82	141	141					0.02028656174866228
AAGRFLASAIS	11	Unmodified	_AAGRFLASAIS_					0	0	0		ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2992553710938	2	532.298373	1062.58219	-0.29904	-0.00015918	1.1635	0.00061932	0.86444	0.00046014	532.2991977275879	32.392	0.10378	32.392	32.342	32.446	0					8	4	3	0	0	0	0.42746	1	10807	10807		49.536	5.1589	1	84913			141	10407	83	83	142	142					0.05340547708851773
AAGRRGRG	8	Unmodified	_AAGRRGRG_					0	0	0			REV__ENST00000578430.1_1_17:56083680-56084618:-|nuORF	REV__ENST00000578430.1_1_17:56083680-56084618:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.73486328125	2	400.733535	799.452517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.825	1	10.825	10.325	11.325	0								0	0	0	1.7419	1	2097	2097		26.796	0	1		+		142	20434	84	84	143	143					0.044768359402382885
AAGTTASLIK	10	Unmodified	_AAGTTASLIK_					0	0	0		ENSG00000187140|ENST00000371116|FOXD3	ENSG00000187140|ENST00000371116|FOXD3	ENSG00000187140|ENST00000371116|FOXD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7743225097656	2	466.7742	931.533846	-0.95483	-0.00044569	1.1002	0.00051353	0.14534	6.7842E-05	466.77453719471936	28.35	0.17619	28.35	28.262	28.438	0					9	6	2	0	0	0	0.41335	1	9125	9125		54.776	19.158	1	98466			143	7184	85	85	144	144					0.06534054068958994
AAGVQIQM	8	Unmodified	_AAGVQIQM_					0	0	0		ENSG00000116031|ENST00000410009|CD207;CD207|p.S159Vfs*9|1|0.3|ENSG00000116031|chr2:70833736-70833736|T/-|frameshift_variant	ENSG00000116031|ENST00000410009|CD207	ENSG00000116031|ENST00000410009|CD207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.2154235839844	2	409.215463	816.416374	0.63281	0.00025896	-0.75456	-0.00030878	-0.12175	-4.9822E-05	409.2152412949214	21.844	0.49056	21.844	21.683	22.173	0					31	14	3	0	0	0	0.6282	1	6071	6071		44.531	5.5096	1	514750			144	2955	86	86	145	145					0.0008219792849786245
AAHLRVGL	8	Unmodified	_AAHLRVGL_					0	0	0		ENST00000588848.5_3_19:13260460-13260511:-|nuORF	ENST00000588848.5_3_19:13260460-13260511:-|nuORF	ENST00000588848.5_3_19:13260460-13260511:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.75848388671875	2	418.758687	835.502821	0.448	0.0001876	-0.90008	-0.00037692	-0.45209	-0.00018931	418.7583248205592	24.286	0.10472	24.286	24.236	24.34	0					4	2	2	0	0	0	0.8006	1	8164	8164		20.482	0	1	111430			145	10927	87	87	146	146					0.07848945545379138
AAIAEAAARPR	11	Unmodified	_AAIAEAAARPR_					0	0	0		ENST00000225726.9_1_17:61843531-61850919:-|nuORF;ENST00000403162.7_1_17:61850179-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8157958984375	2	548.814722	1095.61489	3.8023	0.0020867	-1.6375	-0.00089866	2.1648	0.0011881	548.8133507068503	11.512	0.064899	11.512	11.476	11.541	0					5	3	2	0	0	0	0.7326	1	2249	2249		24.519	1.4767	1	57358			146	8185	88	88	147	147					0.07090754831688173
AAIAPIIAAV	10	Unmodified	_AAIAPIIAAV_					0	0	0		nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ELAC2|p.A450Gfs*45|1|0.12|ENSG00000006744|chr17:13000230-13000230|G/-|frameshift_variant	nc|ENSG00000006744|Q9BQ52-2|ELAC2	nc|ENSG00000006744|Q9BQ52-2|ELAC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.2912902832031	2	455.292028	908.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.878	1	30.878	30.378	31.378	0								0	0	0	0.38459	1	10566	10566		35.201	8.4046	1				147	986	89	89	148	148					0.1115613631660608
AAIARRTR	8	Unmodified	_AAIARRTR_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.786865234375	2	457.785767	913.556982	2.497	0.0011431	-0.10221	-4.6792E-05	2.3948	0.0010963	457.78574415054794	20.469	0.21483	20.469	20.36	20.575	0					9	4	3	0	0	0	0.35045	1	6515	6515		76.774	76.774	1	4448400	+		148	17763	90	90	149	149					0.09674537696923835
AAIDKMTKK	9	Unmodified	_AAIDKMTKK_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2914123535156	2	503.291702	1004.56885	-0.064499	-3.2462E-05	-0.31521	-0.00015864	-0.37971	-0.0001911	503.2914842030803	16.057	0.1414	16.057	15.966	16.107	0					8	3	3	0	0	0	0.38666	1	4286	4286		42.864	5.0528	1	638680			149	3784	91	91	150	150					0.06674973605254308
AAIDKMTKK	9	Unmodified	_AAIDKMTKK_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2915954589844	2	503.291702	1004.56885	-2.0491	-0.0010313	1.4196	0.00071447	-0.62949	-0.00031682	503.29285747047203	15.796	0.099636	15.796	15.74	15.84	0					6	4	2	0	0	0	0.36892	1	3608	3608		44.377	0.26039	1	42203			150	3784	91	91	151	151					0.06674973605254308
AAIEASQSL	9	Unmodified	_AAIEASQSL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.23419189453125	2	445.234907	888.455261	0.18787	8.3646E-05	-0.88128	-0.00039238	-0.69341	-0.00030873	445.23435228124464	32.634	0.18213	32.634	32.581	32.763	0					9	7	2	0	0	0	0.16806	1	10559	10559		65.465	7.2355	1	73955			151	6079	92	92	152	152					0.006572017638518446
AAIEASQSL	9	Unmodified	_AAIEASQSL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2338562011719	2	445.234907	888.455261	0.59485	0.00026485	-1.6984	-0.00075617	-1.1035	-0.00049132	445.2340449558906	32.907	0.20392	32.907	32.826	33.03	0					8	5	2	0	0	0	0.056004	1	12120	12120		93.143	15.826	1	196000			152	6079	92	92	153	153					0.006572017638518446
AAIEASQSL	9	Unmodified	_AAIEASQSL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2341613769531	2	445.234907	888.455261	-1.1624	-0.00051753	1.069	0.00047594	-0.09341	-4.159E-05	445.2354553866024	32.68	0.16182	32.68	32.61	32.772	0					10	6	2	0	0	0	0.28897	1	10905	10905		51.193	3.2771	1	76648			153	6079	92	92	154	154					0.006572017638518446
AAIEASQSL	9	Unmodified	_AAIEASQSL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2346496582031	2	445.234907	888.455261	0.56253	0.00025046	-1.1307	-0.00050343	-0.56819	-0.00025298	445.23439579796013	32.877	0.22684	32.877	32.793	33.02	0					11	5	3	0	0	0	0.04067	1	12544	12544		98.582	2.7668	1	425760			154	6079	92	92	155	155					0.006572017638518446
AAIEASQSL	9	Unmodified	_AAIEASQSL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.2348327636719	2	445.234907	888.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.683	1	32.683	32.183	33.183	0								0	0	0	0.11159	1	11388	11388		68.846	21.189	1				155	6079	92	92	156	156					0.006572017638518446
AAIEASQSL	9	Unmodified	_AAIEASQSL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2350769042969	2	445.234907	888.455261	0.79868	0.0003556	-0.99574	-0.00044334	-0.19706	-8.7739E-05	445.2344679463534	32.853	0.17181	32.853	32.754	32.926	0					6	3	2	0	0	0	0.056004	1	12445	12445		93.143	16.369	1	270260			156	6079	92	92	157	157					0.006572017638518446
AAIMFNLLL	9	Unmodified	_AAIMFNLLL_					0	0	0			REV__nc|ENSG00000138101|O60941-6|DTNB	REV__nc|ENSG00000138101|O60941-6|DTNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2928771972656	2	503.293714	1004.57287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.779	1	15.779	15.279	16.279	0								0	0	0	0.34907	1	3663	3663		25.45	4.9683	1		+		157	14958	93	93	158	158					0.07077063098984127
AAISLAFSK	9	Unmodified	_AAISLAFSK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.26611328125	2	454.26601	906.517468	0.0057353	2.6054E-06	0.53889	0.0002448	0.54463	0.00024741	454.266046148481	37.091	0.1681	37.091	36.979	37.147	0					14	9	2	0	0	0	0.15163	1	12139	12139		67.494	12.717	1	63585			158	3738	94	94	159	159					0.06046972902856851
AAISLAFSK	9	Unmodified	_AAISLAFSK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2657165527344	2	454.26601	906.517468	0.71063	0.00032281	-1.0778	-0.00048959	-0.36713	-0.00016678	454.2654278918511	37.361	0.31574	37.361	37.257	37.573	0					19	9	3	0	0	0	0.01873	1	14152	14152		124.08	44.368	1	471830			159	3738	94	94	160	160					0.06046972902856851
AAISLAFSK	9	Unmodified	_AAISLAFSK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2654724121094	2	454.26601	906.517468	-1.163	-0.00052833	0.52341	0.00023777	-0.63963	-0.00029056	454.2662406384368	37.116	0.18926	37.116	37.042	37.231	0					22	10	3	0	0	0	0.46194	1	12551	12551		36.447	4.4919	1	283760			160	3738	94	94	161	161					0.06046972902856851
AAISLAFSK	9	Unmodified	_AAISLAFSK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2658386230469	2	454.26601	906.517468	0.062693	2.8479E-05	-0.74959	-0.00034051	-0.6869	-0.00031203	454.2657121468432	37.098	0.221	37.098	37.052	37.273	0					16	11	2	0	0	0	0.25716	1	13283	13283		54.776	15.97	1	153140			161	3738	94	94	162	162					0.06046972902856851
AAISQLLPN	9	Unmodified	_AAISQLLPN_					0	0	0		nc|ENSG00000127585|Q8N461-2|FBXL16;ENSG00000127585|ENST00000397621|FBXL16	nc|ENSG00000127585|Q8N461-2|FBXL16	nc|ENSG00000127585|Q8N461-2|FBXL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7678527832031	2	463.768917	925.523281	-0.14272	-6.6188E-05	-0.33251	-0.00015421	-0.47523	-0.0002204	463.76850337722493	31.248	0.1283	31.248	31.188	31.316	0					5	3	2	0	0	0	0.24095	1	11787	11787		56.721	9.0637	1	66117			162	3513	95	95	163	163					0.05754071414514783
AAITLAFSK	9	Unmodified	_AAITLAFSK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	nc|ENSG00000077097|Q02880-2|TOP2B;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2740173339844	2	461.273835	920.533118	0.72263	0.00033333	-0.73832	-0.00034057	-0.015684	-7.2348E-06	461.27352841054903	38.074	0.18859	38.074	38.012	38.201	0					12	6	3	0	0	0	0.21419	1	14931	14931		59.931	8.5953	1	154050			163	1574;22557	96	96	164	164					0.06967259419900529
AAIVAYGLYK	10	Unmodified	_AAIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.8081665039062	2	534.808042	1067.60153	0.56695	0.00030321	-0.22062	-0.00011799	0.34633	0.00018522	534.808014631331	37.852	0.20038	37.852	37.766	37.966	0					28	11	4	0	0	0	0.12663	1	12358	12358		90.777	27.47	1	303820			164	6837	97	97	165	165					0.07043503999739187
AAIVAYGLYK	10	Unmodified	_AAIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3093872070312	2	534.808042	1067.60153	0.16819	8.9952E-05	0.20579	0.00011006	0.37398	0.00020001	534.8079887641968	38.151	0.36456	38.151	38.064	38.429	0					32	14	3	0	0	0	0.28723	1	14470	14470		68.787	24.67	1	1435700			165	6837	97	97	166	166					0.07043503999739187
AAIVAYGLYK	10	Unmodified	_AAIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.31103515625	2	534.808042	1067.60153	-0.5902	-0.00031565	2.2732	0.0012157	1.683	0.00090008	534.8092533977336	37.91	0.16502	37.91	37.843	38.008	0					18	9	3	0	0	0	0.33577	1	12795	12795		63.306	24.5	1	65710			166	6837	97	97	167	167					0.07043503999739187
AAIVAYGLYK	10	Unmodified	_AAIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.8079223632812	2	534.808042	1067.60153	0.16317	8.7263E-05	0.48637	0.00026011	0.64953	0.00034738	534.8083299267942	37.898	0.14909	37.898	37.838	37.987	0					17	8	3	0	0	0	0.17679	1	12791	12791		82.305	26.801	1	173360			167	6837	97	97	168	168					0.07043503999739187
AAIVAYGLYK	10	Unmodified	_AAIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.8081665039062	2	534.808042	1067.60153	1.7915	0.00095811	-1.499	-0.00080168	0.29251	0.00015644	534.8072417131724	38.114	0.32696	38.114	38.012	38.339	0					27	11	3	0	0	0	0.12663	1	14930	14930		90.777	27.47	1	385190			168	6837	97	97	169	169					0.07043503999739187
AAIVAYGLYK	10	Unmodified	_AAIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.8079833984375	2	534.808042	1067.60153	0.29068	0.00015546	0.18064	9.6608E-05	0.47132	0.00025207	534.8080970295937	38.101	0.27566	38.101	38.029	38.305	0					14	9	2	0	0	0	0.12663	1	14926	14926		90.777	27.47	1	636120			169	6837	97	97	170	170					0.07043503999739187
AAIVAYGLYK	10	Unmodified	_AAIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.8074951171875	2	534.808042	1067.60153	-1.3449	-0.00071928	2.1652	0.001158	0.82031	0.00043871	534.8091383256742	37.881	0.25319	37.881	37.794	38.047	0					22	12	3	0	0	0	0.12663	1	13544	13544		90.777	19.481	1	282250			170	6837	97	97	171	171					0.07043503999739187
AAIVGGLAIL	10	Unmodified	_AAIVGGLAIL_					0	0	0			REV__ENSG00000180425|ENST00000623205|C11orf71	REV__ENSG00000180425|ENST00000623205|C11orf71	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.2912902832031	2	449.292028	896.569503	0.62391	0.00028032	-1.6035	-0.00072044	-0.9796	-0.00044012	449.29126208321253	37.351	0.25098	37.351	37.219	37.47	0					11	7	2	0	0	0	0.50739	1	14156	14156		44.531	9.3304	1	63380	+		171	16809	98	98	172	172					0.11708136316599393
AAKFQERF	8	Unmodified	_AAKFQERF_					0	0	0			REV__ENSG00000121764|ENST00000403528|HCRTR1	REV__ENSG00000121764|ENST00000403528|HCRTR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.8455810546875	3	332.846898	995.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.321	1	16.321	15.821	16.821	0								0	0	0	1.7419	1	3891	3891		31.955	8.9124	1		+		172	14317	99	99	173	173					0.020926069916072265
AAKGRGKP	8	Unmodified	_AAKGRGKP_					0	0	0			REV__nc|ENSG00000176510|Q8NH08|OR10AC1	REV__nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.74322509765625	2	392.743037	783.471521	0.71063	0.00027909	-0.25122	-9.8666E-05	0.45941	0.00018043	392.74298287671985	12.372	0.096749	12.372	12.309	12.406	0					5	3	2	0	0	0	0.78122	1	2594	2594		8.2313	3.915	1	111060	+		173	21129	100	100	174	174					0.07112372511278409
AAKPVATK	8	Unmodified	_AAKPVATK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.2478332519531	2	393.247621	784.480688	-0.18104	-7.1193E-05	0.55862	0.00021967	0.37758	0.00014848	393.2478087249302	12.657	0.090922	12.657	12.595	12.686	0					8	3	3	0	0	0	0.35045	1	2715	2715		76.774	13.468	1	356030			174	5547	101	101	175	175					0.07982721076928101
AAKQRHQQ	8	Unmodified	_AAKQRHQQ_					0	0	0		ENSG00000153930|ENST00000682825|ANKFN1	ENSG00000153930|ENST00000682825|ANKFN1	ENSG00000153930|ENST00000682825|ANKFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.8467712402344	3	322.84578	965.515511	2.994	0.00096661	0.0463	1.4948E-05	3.0403	0.00098156	322.84577957058485	15.138	0.16733	15.138	15.079	15.246	0					5	3	2	0	0	0	0.61938	1	3938	3938		45.952	3.5558	1	917930			175	5065	102	102	176	176					0.031373569376114574
AALAALALAL	10	Unmodified	_AALAALALAL_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.29205322265625	2	449.292028	896.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.303	1	37.303	36.803	37.803	0								0	0	0	0.38459	1	14573	14573		35.201	8.4046	1				176	8075	103	103	177	177					0.11708136316576656
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7867431640625	2	457.78711	913.559667	-0.40286	-0.00018443	-0.37141	-0.00017003	-0.77427	-0.00035445	457.7869607586411	20.195	0.15181	20.195	20.126	20.277	0					13	5	3	0	0	0	0.032052	1	5357	5357		107.01	35.712	1	456440			177	2557	104	104	178	178					0.09942948311231703
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.78692626953125	2	457.78711	913.559667	-0.63487	-0.00029063	0.24384	0.00011163	-0.39103	-0.00017901	457.7871845009331	20.559	0.19098	20.559	20.464	20.655	0					12	4	4	0	0	0	0.0097668	1	6404	6404		141.52	29.872	1	3531000			178	2557	104	104	179	179					0.09942948311231703
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7873229980469	2	457.78711	913.559667	-1.0046	-0.00045989	0.80595	0.00036895	-0.19866	-9.0942E-05	457.78758281988695	20.258	0.11307	20.258	20.189	20.302	0					10	4	3	0	0	0	0.12834	1	5616	5616		72.879	19.943	1	331850			179	2557	104	104	180	180					0.09942948311231703
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7867736816406	2	457.78711	913.559667	-1.1252	-0.00051509	0.94687	0.00043347	-0.1783	-8.1625E-05	457.78741587087643	20.249	0.085339	20.249	20.205	20.291	0					6	3	2	0	0	0	0.10915	1	5622	5622		77.318	18.536	1	53220			180	2557	104	104	181	181					0.09942948311231703
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.786865234375	2	457.78711	913.559667	-0.65715	-0.00030083	0.27972	0.00012805	-0.37743	-0.00017278	457.78721041353276	20.457	0.11596	20.457	20.396	20.512	0					6	2	3	0	0	0	0.025517	1	6642	6642		113.41	19.405	1	338800			181	2557	104	104	182	182					0.09942948311231703
AALALAVLAP	10	Unmodified	_AALALAVLAP_					0	0	0		ARSK|p.N262Tfs*39|1|0.4|ENSG00000164291|chr5:95586642-95586642|A/-|frameshift_variant;ENSG00000164291|ENST00000380009|ARSK	ARSK|p.N262Tfs*39|1|0.4|ENSG00000164291|chr5:95586642-95586642|A/-|frameshift_variant	ARSK|p.N262Tfs*39|1|0.4|ENSG00000164291|chr5:95586642-95586642|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.2915954589844	2	455.292028	908.569503	0.1244	5.664E-05	-0.52097	-0.0002372	-0.39657	-0.00018056	455.29173047256637	30.907	0.73581	30.907	30.793	31.529	0					30	19	2	0	0	0	0.661	1	10755	10755		26.796	3.7536	1	198030			182	231	105	105	183	183					0.1115613631660608
AALAPLLAGL	10	Unmodified	_AALAPLLAGL_					0	0	0		SLC37A1|p.G479A|1|0.47|ENSG00000160190|chr21:42574830-42574830|G/C|missense_variant	SLC37A1|p.G479A|1|0.47|ENSG00000160190|chr21:42574830-42574830|G/C|missense_variant	SLC37A1|p.G479A|1|0.47|ENSG00000160190|chr21:42574830-42574830|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.2918701171875	2	455.292028	908.569503	-1.1223	-0.00051096	0.65954	0.00030028	-0.46273	-0.00021068	455.2923555712344	30.906	0.81015	30.906	30.806	31.616	0					54	30	2	0	0	0	0.59237	1	10187	10187		35.201	0	1	246750			183	22410	106	106	184	184					0.11156136316617449
AALCWGVAAPR	11	Unmodified	_AALCWGVAAPR_					0	0	0			REV__ENST00000529055.5_1_11:224232-236273:-|nuORF	REV__ENST00000529055.5_1_11:224232-236273:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.798583984375	2	557.794943	1113.57533	-0.87477	-0.00048794	-2.4001	-0.0013388	-3.2749	-0.0018267	557.7933024381509	27.948	1.0646	27.948	27.645	28.71	0					53	26	5	0	0	0	0.61618	1	9176	9176		35.618	2.8059	1	3600500	+		184	20026	107	107	185	185					0.023089115566108376
AALDKATVL	9	Unmodified	_AALDKATVL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.27093505859375	2	451.271293	900.528032	-0.00041155	-1.8572E-07	-0.55754	-0.0002516	-0.55795	-0.00025179	451.2710703116191	32.423	0.21811	32.423	32.345	32.563	0					19	9	3	0	0	0	0.023928	1	10471	10471		115.49	36.043	1	208630			185	4928	108	108	186	186					0.07378955557271638
AALDKATVL	9	Unmodified	_AALDKATVL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2709655761719	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.659	1	32.659	32.159	33.159	0								0	0	0	0.040385	1	12432	12432		90.601	18.723	1				186	4928	108	108	187	187					0.07378955557271638
AALDKATVL	9	Unmodified	_AALDKATVL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.27130126953125	2	451.271293	900.528032	-0.40674	-0.00018355	-0.36891	-0.00016648	-0.77565	-0.00035003	451.2712463357375	32.632	0.26595	32.632	32.523	32.789	0					9	5	3	0	0	0	0.37197	1	12357	12357		44.117	6.9577	1	137810			187	4928	108	108	188	188					0.07378955557271638
AALDKATVL	9	Unmodified	_AALDKATVL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2710266113281	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.633	1	32.633	32.133	33.133	0								0	0	0	0.010168	1	12324	12324		109.48	30.027	1				188	4928	108	108	189	189					0.07378955557271638
AALDKATVL	9	Unmodified	_AALDKATVL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.27093505859375	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.671	1	32.671	32.171	33.171	0								0	0	0	0.045272	1	12341	12341		88.177	21.748	1				189	4928	108	108	190	190					0.07378955557271638
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2982177734375	2	516.297842	1030.58113	0.27792	0.00014349	0.22057	0.00011388	0.49849	0.00025737	516.2977150015322	31.555	0.20585	31.555	31.482	31.688	0					15	9	3	0	0	0	0.12239	1	10136	10136		74.255	43.751	1	177530			190	7880	109	109	191	191					0.06706333339934645
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2978515625	2	516.297842	1030.58113	0.036984	1.9095E-05	0.15215	7.8554E-05	0.18913	9.7648E-05	516.297951491774	31.819	0.37431	31.819	31.685	32.059	0					23	9	4	0	0	0	0.0067848	1	11611	11611		150.36	68.121	1	1161100			191	7880	109	109	192	192					0.06706333339934645
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2970581054688	2	516.297842	1030.58113	0.094667	4.8876E-05	-0.66971	-0.00034577	-0.57504	-0.00029689	516.2975957548878	31.608	0.16918	31.608	31.515	31.684	0					9	6	2	0	0	0	0.35021	1	10483	10483		45.972	8.8131	1	86795			192	7880	109	109	193	193					0.06706333339934645
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.5342712402344	3	344.53432	1030.58113	0.34951	0.00012042	-0.67115	-0.00023123	-0.32164	-0.00011082	344.53407260130984	31.818	0.39026	31.818	31.719	32.109	0					14	8	3	0	0	0	0.42902	1	12024	12024		63.534	41.848	1	579950			193	7880	109	109	194	194					0.06706333339934645
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2978515625	2	516.297842	1030.58113	-0.51156	-0.00026412	1.022	0.00052767	0.51047	0.00026355	516.2983561009563	31.792	0.30554	31.792	31.685	31.99	0					15	6	3	0	0	0	0.076532	1	12031	12031		85.862	34.526	1	508920			194	7880	109	109	195	195					0.06706333339934645
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	344.5341796875	3	344.53432	1030.58113	0.49092	0.00016914	-0.77797	-0.00026804	-0.28704	-9.8896E-05	344.534024450818	31.613	0.090158	31.613	31.529	31.619	0					4	2	2	0	0	0	0.4966	1	10897	10897		47.96	19.878	1	68090			195	7880	109	109	196	196					0.06706333339934645
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2974243164062	2	516.297842	1030.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.568	1	31.568	31.068	32.068	0								0	0	0	0.1219	1	10885	10885		66.429	35.926	1				196	7880	109	109	197	197					0.06706333339934645
AALDWVTKK	9	Unmodified	_AALDWVTKK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000488944.5_1_6:33255341-33255794:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.5342102050781	3	344.53432	1030.58113	-0.032408	-1.1166E-05	-0.065584	-2.2596E-05	-0.097992	-3.3762E-05	344.5342892868873	31.777	0.41823	31.777	31.667	32.085	0					19	8	3	0	0	0	0.25716	1	11902	11902		70.816	44.753	1	980990			197	7880	109	109	198	198					0.06706333339934645
AALEQDLGK	9	Unmodified	_AALEQDLGK_					0	0	0		ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7555236816406	2	472.756007	943.497461	-1.4846	-0.00070185	0.94144	0.00044507	-0.54316	-0.00025678	472.7563414399789	18.437	0.17123	18.437	18.332	18.503	0					9	6	2	0	0	0	0.38666	1	4823	4823		42.864	8.6917	1	119790			198	7565	110	110	199	199					0.023451771722420744
AALEQDLGK	9	Unmodified	_AALEQDLGK_					0	0	0		ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7556457519531	2	472.756007	943.497461	0.62792	0.00029685	-1.117	-0.00052808	-0.48911	-0.00023123	472.7554363243427	18.661	0.2644	18.661	18.454	18.719	0					8	5	2	0	0	0	0.36892	1	5642	5642		44.377	6.5657	1	653790			199	7565	110	110	200	200					0.023451771722420744
AALFPLPKK	9	Unmodified	_AALFPLPKK_					0	0	0			REV__nc|ENSG00000141052|Q8IZQ8-2|MYOCD	REV__nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.8140869140625	2	492.81567	983.616788	-2.6101	-0.0012863	-1.2345	-0.0006084	-3.8446	-0.0018947	492.81523879557335	13.787	0.27785	13.787	13.556	13.834	0					30	15	3	0	0	0	0.35045	1	2786	2786		45.952	45.952	1	140590	+		200	15100	111	111	201	201					0.12432415587613832
AALGAPPTR	9	Unmodified	_AALGAPPTR_					0	0	0			REV__ENST00000474879.6_3_22:50944533-50944617:-|nuORF	REV__ENST00000474879.6_3_22:50944533-50944617:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.2481384277344	2	427.248152	852.481751	-0.99612	-0.00042559	0.53365	0.000228	-0.46248	-0.00019759	427.24840356344	23.219	0.25486	23.219	23.12	23.374	0					16	8	3	0	0	0	0.57706	1	6925	6925		24.203	2.2429	1	235710	+		201	19523	112	112	202	202					0.0496093544585392
AALIGLALHE	10	Unmodified	_AALIGLALHE_					0	0	0			REV__ENST00000318006.9_1_15:42452801-42452900:-|nuORF	REV__ENST00000318006.9_1_15:42452801-42452900:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.761	1	40.761	40.261	41.261	0								0	0	0	0.4201	1	16209	16209		20.837	4.1198	1		+		202	18313	113	113	203	203					0.07810333339921272
AALIYLVN	8	Unmodified	_AALIYLVN_					0	0	0			REV__ENSG00000122733|ENST00000242315|PHF24	REV__ENSG00000122733|ENST00000242315|PHF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.7606506347656	2	438.763104	875.511654	-0.98255	-0.00043111	-3.538	-0.0015524	-4.5206	-0.0019835	438.7616959831438	14.733	0.096673	14.733	14.67	14.767	0					7	4	2	0	0	0	0.67475	1	3240	3240		37.028	3.1068	1	46841	+		203	14342	114	114	204	204					0.06891874391192232
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__ENSG00000185518|ENST00000394232|SV2B	REV__ENSG00000185518|ENST00000394232|SV2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.317138671875	2	462.318046	922.621539	-0.44443	-0.00020547	-0.093882	-4.3404E-05	-0.53831	-0.00024887	462.3180046205623	41.465	0.13636	41.465	41.388	41.524	0					13	8	2	0	0	0	0.5654	1	13278	13278		25.45	0	1	88067	+		204	17033	115	115	205	205					0.15713299730373365
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__ENSG00000185518|ENST00000394232|SV2B	REV__ENSG00000185518|ENST00000394232|SV2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.3177490234375	2	462.318046	922.621539	-0.71967	-0.00033272	0.49101	0.000227	-0.22866	-0.00010571	462.31818846460254	41.755	0.25439	41.755	41.653	41.907	0					32	12	3	0	0	0	0.43426	1	15833	15833		38.806	6.8513	1	459000	+		205	17033	115	115	206	206					0.15713299730373365
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__ENSG00000185518|ENST00000394232|SV2B	REV__ENSG00000185518|ENST00000394232|SV2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.31793212890625	2	462.318046	922.621539	0.79852	0.00036917	-0.98	-0.00045307	-0.18148	-8.3903E-05	462.3175463675315	43.17	0.20344	43.17	43.067	43.27	0					9	6	2	0	0	0	0.39123	1	17271	17271		42.474	0	1	89890	+		206	17033	115	115	207	207					0.15713299730373365
AALLTLKRP	9	Unmodified	_AALLTLKRP_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;OVCH2|p.S358Ffs*6|1|0.34|ENSG00000183378|chr11:7696533-7696534|-/A|frameshift_variant;OVCH2|p.P513Lfs*3|1|0.31|ENSG00000183378|chr11:7691370-7691370|G/-|frameshift_variant;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.8243408203125	2	491.824027	981.633501	0.81627	0.00040146	-0.26486	-0.00013026	0.55141	0.0002712	491.823679648838	11.576	0.082187	11.576	11.541	11.623	0					4	2	2	0	0	0	0.61124	1	2283	2283		12.207	0	1	148000			207	11674	116	116	208	208					0.14194916473547892
AALNQQILK	9	Unmodified	_AALNQQILK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;RHPN2|p.L194Pfs*53|1|0.13|ENSG00000131941|chr19:33011691-33011691|A/-|frameshift_variant	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8031005859375	2	499.803291	997.59203	0.88335	0.0004415	3.0263	0.0015126	3.9097	0.0019541	499.80266952709974	30.269	0.18763	30.269	30.179	30.367	0					14	4	4	0	0	0	0.027316	1	11307	11307		111.65	15.833	1	689950			208	3751	117	117	209	209					0.09313735714238192
AALNQQILK	9	Unmodified	_AALNQQILK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;RHPN2|p.L194Pfs*53|1|0.13|ENSG00000131941|chr19:33011691-33011691|A/-|frameshift_variant	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.80340576171875	2	499.803291	997.59203	2.9198	0.0014593	0.48246	0.00024113	3.4023	0.0017005	499.80176119497025	30.222	0.26102	30.222	30.115	30.376	0					13	5	3	0	0	0	0.062676	1	11177	11177		90.777	0	1	773150			209	3751	117	117	210	210					0.09313735714238192
AALPAQQPL	9	Unmodified	_AALPAQQPL_					0	0	0		ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469;ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant;ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant	ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.7633056640625	2	454.763635	907.512717	-0.57003	-0.00025923	-0.32619	-0.00014834	-0.89622	-0.00040757	454.76360327047485	31.449	0.17197	31.449	31.359	31.531	0					7	4	2	0	0	0	0.43426	1	11459	11459		38.806	1.647	1	160300			210	7869	118	118	211	211					0.055260887600866226
AALQELLSK	9	Unmodified	_AALQELLSK_					0	0	0		ENSG00000118181|ENST00000527673|RPS25	ENSG00000118181|ENST00000527673|RPS25	ENSG00000118181|ENST00000527673|RPS25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7894287109375	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.594	1	39.594	39.094	40.094	0								0	0	0	0.077333	1	15660	15660		78.264	21.543	1				211	3067	119	119	212	212					0.07822627103053037
AALQTQPSLG	10	Unmodified	_AALQTQPSLG_					0	0	0		ENST00000581021.5_1_18:23669934-23670096:-|nuORF	ENST00000581021.5_1_18:23669934-23670096:-|nuORF	ENST00000581021.5_1_18:23669934-23670096:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.1834716796875	3	329.181946	984.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.507	1	26.507	26.007	27.007	0								0	0	0	0.4201	1	8066	8066		16.007	0.36496	1				212	10871	120	120	213	213					0.03112866063565889
AALQVHQPPPG	11	Unmodified	_AALQVHQPPPG_					0	0	0		ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.2057189941406	3	372.204974	1113.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.739	1	14.739	14.239	15.239	0								0	0	0	0.44926	1	3245	3245		26.063	0.9374	1				213	11006	121	121	214	214					0.04083950083122545
AALRPLVKPK	10	Unmodified	_AALRPLVKPK_					0	0	0		ENST00000452606.2_1_3:12880846-12881736:-|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.9130554199219	3	364.913243	1091.7179	0.093751	3.4211E-05	-0.18466	-6.7386E-05	-0.090912	-3.3175E-05	364.9130672079582	20.429	0.12421	20.429	20.335	20.459	0					6	4	2	0	0	0	0.58189	1	5461	5461		36.447	19.082	1	73126			214	4634	122	122	215	215					0.17570867290305614
AALRPLVKPK	10	Unmodified	_AALRPLVKPK_					0	0	0		ENST00000452606.2_1_3:12880846-12881736:-|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.91314697265625	3	364.913243	1091.7179	0.47572	0.0001736	-0.63966	-0.00023342	-0.16394	-5.9822E-05	364.91302024888546	20.79	0.16344	20.79	20.685	20.848	0					11	3	4	0	0	0	0.35046	1	6520	6520		61.691	42.588	1	1220500			215	4634	122	122	216	216					0.17570867290305614
AALRPLVKPK	10	Unmodified	_AALRPLVKPK_					0	0	0		ENST00000452606.2_1_3:12880846-12881736:-|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.9132080078125	3	364.913243	1091.7179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.477	1	20.477	19.977	20.977	0								0	0	0	0.27575	1	5725	5725		54.722	38.005	1				216	4634	122	122	217	217					0.17570867290305614
AALRPLVKPK	10	Unmodified	_AALRPLVKPK_					0	0	0		ENST00000452606.2_1_3:12880846-12881736:-|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.9132995605469	3	364.913243	1091.7179	0.48332	0.00017637	-0.56623	-0.00020662	-0.082906	-3.0253E-05	364.9130805748131	20.704	0.26835	20.704	20.595	20.863	0					13	5	4	0	0	0	0.3337	1	6740	6740		63.534	37.47	1	1192400			217	4634	122	122	218	218					0.17570867290305614
AALSGINGGL	10	Unmodified	_AALSGINGGL_					0	0	0		ENSG00000156299|ENST00000541036|TIAM1;nc|ENSG00000156299|Q13009-2|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.74560546875	2	436.745442	871.476331	-0.90475	-0.00039514	0.4549	0.00019868	-0.44985	-0.00019647	436.7457141590275	25.348	0.32135	25.348	25.158	25.479	0					17	11	2	0	0	0	0.67098	1	7851	7851		25.574	1.3713	1	212920			218	5166	123	123	219	219					0.03545211863388431
AALSYVLCK	9	Unmodified	_AALSYVLCK_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.267578125	2	484.267696	966.520839	0.011743	5.6867E-06	-1.732	-0.00083876	-1.7203	-0.00083307	484.2668024668983	38.034	0.20632	38.034	37.93	38.136	0					19	12	2	0	0	0	0.30951	1	12411	12411		49.442	13.823	1	76544			219	5430	124	124	220	220					0.036238996851921
AALSYVLCK	9	Unmodified	_AALSYVLCK_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2680358886719	2	484.267696	966.520839	-1.2417	-0.00060129	1.0864	0.0005261	-0.15527	-7.5193E-05	484.2686031396328	38.124	0.26196	38.124	37.949	38.211	0					28	14	3	0	0	0	0.30951	1	12852	12852		49.442	7.0454	1	91834			220	5430	124	124	221	221					0.036238996851921
AALSYVLCK	9	Unmodified	_AALSYVLCK_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2666015625	2	484.267696	966.520839	-0.26197	-0.00012686	0.47089	0.00022804	0.20892	0.00010117	484.267503202685	38.048	0.29173	38.048	37.993	38.284	0					17	15	2	0	0	0	0.39215	1	13614	13614		42.396	11.892	1	50905			221	5430	124	124	222	222					0.036238996851921
AALSYVLCK	9	Unmodified	_AALSYVLCK_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.268798828125	2	484.267696	966.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.089	1	38.089	37.589	38.589	0								0	0	0	0.31838	1	13630	13630		31.53	1.0262	1				222	5430	124	124	223	223					0.036238996851921
AALSYVLCK	9	Unmodified	_AALSYVLCK_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2666320800781	2	484.267696	966.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.253	1	38.253	37.753	38.753	0								0	0	0	0.27025	1	15025	15025		40.778	3.6191	1				223	5430	124	124	224	224					0.036238996851921
AALSYVLCK	9	Carbamidomethyl (C)	_AALSYVLC(Carbamidomethyl (C))K_	AALSYVLC(1)K		AALSYVLC(48)K		0	1	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7787475585938	2	512.778428	1023.5423	-1.685	-0.00086401	3.0945	0.0015868	1.4095	0.00072278	512.7794439911823	36.064	0.18592	36.064	35.972	36.158	0					9	6	2	0	0	0	0.33044	1	12892	12892		47.657	20.964	1	103860			224	5430	124	125	225	225	223				0.03147284713918452
AALSYVLCK	9	Carbamidomethyl (C)	_AALSYVLC(Carbamidomethyl (C))K_	AALSYVLC(1)K		AALSYVLC(120)K		0	1	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7783813476562	2	512.778428	1023.5423	3.1417	0.001611	-2.6708	-0.0013695	0.47088	0.00024146	512.7766742726085	36.209	0.36369	36.209	36.047	36.411	0					12	7	2	0	0	0	0.023928	1	14063	14063		115.49	41.519	1	666830			225	5430	124	125	226	226	223				0.03147284713918452
AALVLPTRAP	10	Unmodified	_AALVLPTRAP_					0	0	0			REV__ENST00000566982.1_1_16:75263411-75272069:-|nuORF	REV__ENST00000566982.1_1_16:75263411-75272069:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.87835693359375	3	336.878198	1007.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.85	1	16.85	16.35	17.35	0								0	0	0	0.4201	1	3913	3913		21.686	5.679	1		+		226	13033	125	126	227	227					0.10926326093886018
AALVSPGA	8	Unmodified	_AALVSPGA_					0	0	0			REV__nc|ENSG00000223519|B7ZC32|KIF28P	REV__nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.19891357421875	2	343.197596	684.38064	3.491	0.0011981	0.38495	0.00013211	3.8759	0.0013302	343.197624093721	27.286	0.4825	27.286	27.188	27.67	0					41	17	4	0	0	0	0.79462	1	8372	8372		16.705	0	1	2277700	+		227	21217	126	127	228	228					0.025824837431400738
AAMEETHQK	9	Unmodified	_AAMEETHQK_					0	0	0		nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP;ENSG00000133030|ENST00000651222|MPRIP	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7430419921875	2	522.742573	1043.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.68	1	13.68	13.18	14.18	0								0	0	0	0.10826	1	3167	3167		69.628	20.186	1				228	3832	127	128	229	229					-0.04940254710618319
AAMELVLRK	9	Unmodified	_AAMELVLRK_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A;KIF13A|p.H1262R|1|0.18|ENSG00000137177|chr6:17780791-17780791|T/C|missense_variant	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8079223632812	2	515.807519	1029.60049	0.032811	1.6924E-05	-3.1489	-0.0016242	-3.1161	-0.0016073	515.805149586304	30.008	0.44398	30.008	29.922	30.366	0					22	11	3	0	0	0	0.22837	1	10781	10781		58.23	2.7257	1	354760			229	4147	128	129	230	230					0.08686966359209691
AAMEPLTAR	9	Unmodified	_AAMEPLTAR_					0	0	0		nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2524108886719	2	480.252577	958.490601	0.49971	0.00023999	-1.2536	-0.00060206	-0.75392	-0.00036207	480.2520988066538	27.149	0.21745	27.149	27.048	27.265	0					15	5	3	0	0	0	0.16806	1	9473	9473		65.465	14.13	1	381360			230	11672	129	130	231	231					0.009695410200151855
AAMEPLTAR	9	Unmodified	_AAMEPLTAR_					0	0	0		nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2523498535156	2	480.252577	958.490601	-0.11083	-5.3226E-05	-0.76102	-0.00036548	-0.87185	-0.00041871	480.25228269776875	27.172	0.31571	27.172	27.023	27.338	0					12	6	3	0	0	0	0.085655	1	9802	9802		82.75	21.779	1	303040			231	11672	129	130	232	232					0.009695410200151855
AAMEPLTAR	9	Unmodified	_AAMEPLTAR_					0	0	0		nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2521057128906	2	480.252577	958.490601	-0.64536	-0.00030994	-0.39277	-0.00018863	-1.0381	-0.00049857	480.25235807418505	27.111	0.27031	27.111	27.002	27.272	0					11	5	3	0	0	0	0.10915	1	9651	9651		77.318	25.018	1	499880			232	11672	129	130	233	233					0.009695410200151855
AAMKALQAL	9	Unmodified	_AAMKALQAL_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF;nc|ENSG00000040341|Q9NUL3-7|STAU2	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7674255371094	2	458.767863	915.521173	0.79636	0.00036535	-1.6178	-0.00074219	-0.82143	-0.00037685	458.76729304924163	35.928	0.2781	35.928	35.79	36.068	0					16	7	3	0	0	0	0.14603	1	13498	13498		68.787	7.8149	1	212110			233	1191	130	131	234	234					0.06003319405044749
AAMKALQAL	9	Unmodified	_AAMKALQAL_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF;nc|ENSG00000040341|Q9NUL3-7|STAU2	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7674255371094	2	458.767863	915.521173	-0.96201	-0.00044134	0.047585	2.183E-05	-0.91443	-0.00041951	458.76796494020766	35.672	0.24725	35.672	35.617	35.864	0					17	12	2	0	0	0	0.26904	1	12064	12064		53.351	3.3269	1	200590			234	1191	130	131	235	235					0.06003319405044749
AAMKALQAL	9	Unmodified	_AAMKALQAL_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF;nc|ENSG00000040341|Q9NUL3-7|STAU2	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.76763916015625	2	458.767863	915.521173	0.7221	0.00033128	-1.1918	-0.00054677	-0.46972	-0.00021549	458.7673381849675	35.894	0.5022	35.894	35.676	36.178	0					32	15	3	0	0	0	0.027316	1	13930	13930		111.65	28.361	1	821620			235	1191	130	131	236	236					0.06003319405044749
AAMKALQAL	9	Unmodified	_AAMKALQAL_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF;nc|ENSG00000040341|Q9NUL3-7|STAU2	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7679748535156	2	458.767863	915.521173	0.087176	3.9994E-05	-0.70965	-0.00032556	-0.62247	-0.00028557	458.7676869170692	35.702	0.24532	35.702	35.597	35.842	0					16	9	2	0	0	0	0.26904	1	12718	12718		53.351	9.2347	1	162700			236	1191	130	131	237	237					0.06003319405044749
AAMKALQAL	9	Unmodified	_AAMKALQAL_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF;nc|ENSG00000040341|Q9NUL3-7|STAU2	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.767333984375	2	458.767863	915.521173	-2.6401	-0.0012112	1.5715	0.00072098	-1.0685	-0.00049021	458.7686364314296	35.685	0.19105	35.685	35.589	35.781	0					12	7	2	0	0	0	0.30951	1	12714	12714		49.442	5.8155	1	167770			237	1191	130	131	238	238					0.06003319405044749
AAMKALQAL	9	Unmodified	_AAMKALQAL_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF;nc|ENSG00000040341|Q9NUL3-7|STAU2	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.767822265625	2	458.767863	915.521173	0.88042	0.00040391	-1.5385	-0.00070579	-0.65804	-0.00030189	458.7672802195562	35.825	0.56372	35.825	35.62	36.183	0					22	11	3	0	0	0	0.030949	1	13855	13855		108.09	28.636	1	1028900			238	1191	130	131	239	239					0.06003319405044749
AAMKALQAL	9	Unmodified	_AAMKALQAL_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF;nc|ENSG00000040341|Q9NUL3-7|STAU2	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.76751708984375	2	458.767863	915.521173	2.5131	0.0011529	-2.5705	-0.0011793	-0.057392	-2.633E-05	458.7667085346159	35.84	0.46168	35.84	35.603	36.064	0					20	9	4	0	0	0	0.013383	1	13867	13867		133.81	45.17	1	715600			239	1191	130	131	240	240					0.06003319405044749
AAMKGNSTLK	10	Unmodified	_AAMKGNSTLK_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.77911376953125	2	510.778959	1019.54336	0.97799	0.00049954	-0.65074	-0.00033238	0.32726	0.00016716	510.7786195904682	15.778	0.085103	15.778	15.739	15.824	0					4	2	2	0	0	0	0.1725	1	4160	4160		61.691	15.719	1	291540			240	3761	131	132	241	241					0.03437499082838258
AAMKGNSTLK	10	Unmodified	_AAMKGNSTLK_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7789306640625	2	510.778959	1019.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.781	1	15.781	15.281	16.281	0								0	0	0	0.16384	1	4236	4236		47.96	0	1				241	3761	131	132	242	242					0.03437499082838258
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(120)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.7979125976562	2	555.796817	1109.57908	1.4198	0.0007891	0.12006	6.6729E-05	1.5398	0.00085583	555.7970703477134	38.033	0.41407	38.033	37.844	38.258	0					54	24	4	0	0	0	0.033694	1	12377	12377		115.49	35.781	1	548730			242	2891	132	133	243	243		123			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(51)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.7975463867188	2	555.796817	1109.57908	0.11425	6.3502E-05	1.3641	0.00075815	1.4783	0.00082166	555.797623747308	38.069	0.3658	38.069	37.899	38.265	0					30	20	2	0	0	0	0.44601	1	12816	12816		51.193	15.574	1	132540			243	2891	132	133	244	244		123			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(120)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7973022460938	2	555.796817	1109.57908	0.54529	0.00030307	0.11647	6.4734E-05	0.66176	0.00036781	555.7969529231758	38.266	0.61406	38.266	38.081	38.695	0					63	21	4	0	0	0	0.026103	2	14952	14952;15109		120.87	22.874	1	1229800			244	2891	132	133	245;246	245		123			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(100)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7969970703125	2	555.796817	1109.57908	1.6774	0.00093227	-0.98537	-0.00054767	0.692	0.00038461	555.7964200128129	38.179	0.53088	38.179	38.07	38.601	0					41	18	3	0	0	0	0.065649	1	14958	14958		104.06	41.949	1	808670			245	2891	132	133	247	247		123			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(110)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.7977905273438	2	555.796817	1109.57908	1.6981	0.00094377	0.49109	0.00027295	2.1891	0.0012167	555.797222418589	38.087	0.40803	38.087	37.865	38.273	0					50	20	3	0	0	0	0.04084	1	13571	13571		112.41	40.533	1	324200			246	2891	132	133	248	248		123			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(56)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.2991943359375	2	555.796817	1109.57908	1.1314	0.00062882	0.12999	7.2249E-05	1.2614	0.00070107	555.7970683335743	37.986	0.50729	37.986	37.859	38.367	0					52	25	3	0	0	0	0.39827	1	13569	13569		56.434	17.181	1	393520			247	2891	132	133	249	249		123			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(150)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7970581054688	2	555.796817	1109.57908	1.1039	0.00061356	-0.7355	-0.00040879	0.36844	0.00020478	555.7964747798605	38.135	0.82107	38.135	37.988	38.81	0					54	17	5	0	0	0	0.0084313	2	14939	14939;15111		150.36	59.992	1	4212500			248	2891	132	133	250;251	250		123			0.028675365398157737
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.8007202148438	2	547.79936	1093.58417	1.6495	0.00090358	-0.59393	-0.00032535	1.0555	0.00057823	547.7990894556243	43.38	0.28276	43.38	43.281	43.564	0					55	17	5	0	0	0	0.3337	1	13681	13681		63.534	21.138	1	748220			249	2891	132	134	252	252					0.04111840402447342
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.3020629882812	2	547.79936	1093.58417	0.47344	0.00025935	-0.20853	-0.00011423	0.2649	0.00014511	547.799431855752	43.683	0.2251	43.683	43.589	43.814	0					29	12	3	0	0	0	0.59277	1	16431	16431		35.152	0.97948	1	171090			250	2891	132	134	253	253					0.04111840402447342
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.8016357421875	2	547.79936	1093.58417	0.41872	0.00022937	0.23075	0.0001264	0.64946	0.00035578	547.799577346162	43.423	0.33026	43.423	43.357	43.688	0					57	20	4	0	0	0	0.31613	1	14199	14199		65.465	29.847	1	1886700			251	2891	132	134	254	254					0.04111840402447342
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.8011474609375	2	547.79936	1093.58417	1.1504	0.00063016	-0.35069	-0.00019211	0.79967	0.00043806	547.7992379402333	43.451	0.28937	43.451	43.334	43.624	0					56	17	4	0	0	0	0.12763	1	15037	15037		90.601	30.483	1	1061400			252	2891	132	134	255	255					0.04111840402447342
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.80078125	2	547.79936	1093.58417	0.52294	0.00028646	0.28577	0.00015654	0.8087	0.00044301	547.7997972966914	43.571	0.2809	43.571	43.475	43.756	0					24	8	4	0	0	0	0.018513	1	17429	17429		126.24	49.468	1	1233000			253	2891	132	134	256	256					0.04111840402447342
AAMLMPHQK	9	Unmodified	_AAMLMPHQK_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.845458984375	3	342.845624	1025.51504	0.67806	0.00023247	-1.4106	-0.00048361	-0.73251	-0.00025114	342.84527669206005	22.212	0.36684	22.212	22.031	22.398	0					19	8	3	0	0	0	0.50461	1	7194	7194		56.721	26.217	1	514400			254	4278	133	135	257	257					0.003304779018890258
AAMLMPHQK	9	Unmodified	_AAMLMPHQK_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7649536132812	2	513.764797	1025.51504	0.017217	8.8453E-06	-0.10925	-5.6129E-05	-0.092034	-4.7284E-05	513.7646600308528	22.246	0.39703	22.246	21.898	22.295	0					16	9	3	0	0	0	0.077948	1	7207	7207		85.359	39.408	1	460680			255	4278	133	135	258	258					0.003304779018890258
AAMLMPHQK	9	Unmodified	_AAMLMPHQK_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.764892578125	2	513.764797	1025.51504	-0.47636	-0.00024474	0.5764	0.00029614	0.10004	5.1397E-05	513.7650264919665	22.118	0.36263	22.118	21.939	22.302	0					12	7	3	0	0	0	0.099922	1	7440	7440		79.451	22.73	1	227050			256	4278	133	135	259	259					0.003304779018890258
AAMLMPHQK	9	Unmodified	_AAMLMPHQK_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.8455810546875	3	342.845624	1025.51504	-0.028638	-9.8184E-06	-0.095752	-3.2828E-05	-0.12439	-4.2646E-05	342.84560664501345	22.097	0.36712	22.097	21.887	22.254	0					12	7	2	0	0	0	0.49003	1	7311	7311		49.442	22.749	1	646040			257	4278	133	135	260	260					0.003304779018890258
AAMPGFIAK	9	Unmodified	_AAMPGFIAK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;POLK|p.K571Nfs*18|1|0.29|ENSG00000122008|chr5:75596401-75596401|A/-|frameshift_variant	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.24969482421875	2	453.249306	904.484059	0.59506	0.00026971	-0.53853	-0.00024409	0.056526	2.562E-05	453.2491414874327	33.651	0.22891	33.651	33.573	33.802	0					18	9	3	0	0	0	0.21116	1	10955	10955		60.294	30.452	1	176850			258	3246	134	136	261	261					0.02799647859308152
AAMPGFIAK	9	Unmodified	_AAMPGFIAK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;POLK|p.K571Nfs*18|1|0.29|ENSG00000122008|chr5:75596401-75596401|A/-|frameshift_variant	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.2491455078125	2	453.249306	904.484059	-0.0073629	-3.3372E-06	0.23286	0.00010555	0.2255	0.00010221	453.2492423758983	33.682	0.17029	33.682	33.593	33.763	0					17	7	3	0	0	0	0.16524	1	10961	10961		65.803	23.329	1	141200			259	3246	134	136	262	262					0.02799647859308152
AAMPGFIAK	9	Unmodified	_AAMPGFIAK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;POLK|p.K571Nfs*18|1|0.29|ENSG00000122008|chr5:75596401-75596401|A/-|frameshift_variant	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2495422363281	2	453.249306	904.484059	0.29489	0.00013366	-1.0142	-0.00045968	-0.7193	-0.00032602	453.24900094907963	33.939	0.3539	33.939	33.817	34.17	0					24	9	4	0	0	0	0.032656	1	12590	12590		106.42	33.795	1	895190			260	3246	134	136	263	263					0.02799647859308152
AAMPGFIAK	9	Unmodified	_AAMPGFIAK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;POLK|p.K571Nfs*18|1|0.29|ENSG00000122008|chr5:75596401-75596401|A/-|frameshift_variant	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.249755859375	2	453.249306	904.484059	0.69195	0.00031363	-1.1339	-0.00051394	-0.44196	-0.00020032	453.2487933808704	33.923	0.27201	33.923	33.844	34.116	0					19	7	4	0	0	0	0.21116	1	12586	12586		60.294	60.294	1	1005500			261	3246	134	136	264	264					0.02799647859308152
AAMPGFIAK	9	Unmodified	_AAMPGFIAK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;POLK|p.K571Nfs*18|1|0.29|ENSG00000122008|chr5:75596401-75596401|A/-|frameshift_variant	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2493896484375	2	453.249306	904.484059	-0.12191	-5.5257E-05	-0.65653	-0.00029757	-0.77844	-0.00035283	453.24909198244717	33.927	0.40319	33.927	33.838	34.241	0					28	9	4	0	0	0	0.043797	1	13017	13017		97.473	34.494	1	3782200			262	3246	134	136	265	265					0.02799647859308152
AAMPGFIAK	9	Unmodified	_AAMPGFIAK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;POLK|p.K571Nfs*18|1|0.29|ENSG00000122008|chr5:75596401-75596401|A/-|frameshift_variant	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2498474121094	2	453.249306	904.484059	-0.41616	-0.00018862	0.20746	9.4032E-05	-0.2087	-9.4591E-05	453.2493662559613	33.915	0.47955	33.915	33.782	34.261	0					32	10	4	0	0	0	0.18605	1	12905	12905		63.306	11.007	1	3518300			263	3246	134	136	266	266					0.02799647859308152
AAMRETVK	8	Unmodified	_AAMRETVK_					0	0	0			REV__CCDC116|p.A93V|1|0.38|ENSG00000161180|chr22:21634227-21634227|C/T|missense_variant	REV__CCDC116|p.A93V|1|0.38|ENSG00000161180|chr22:21634227-21634227|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2497863769531	2	453.247295	904.480036	3.9354	0.0017837	0.92929	0.0004212	4.8647	0.0022049	453.2477182637116	33.722	0.19852	33.722	33.655	33.854	0					18	7	3	0	0	0	0.5676	1	11326	11326		53.351	4.1407	1	333460	+		264	12351	135	137	267	267					0.02397558365578334
AAMVGGLFR	9	Unmodified	_AAMVGGLFR_					0	0	0		ENSG00000104522|ENST00000425753|GFUS;ENST00000529899.1_1_8:144698125-144699659:-|nuORF;ENST00000532308.5_1_8:144696774-144699659:-|nuORF;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENST00000531006.1_1_8:144698125-144698617:-|nuORF	ENSG00000104522|ENST00000425753|GFUS;ENST00000531006.1_1_8:144698125-144698617:-|nuORF	ENSG00000104522|ENST00000425753|GFUS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2530517578125	2	461.25238	920.490207	0.72264	0.00033332	0.49499	0.00022832	1.2176	0.00056163	461.2527447177194	39.251	0.18013	39.251	39.156	39.336	0					10	6	2	0	0	0	0.49003	1	15429	15429		33.516	5.2613	1	64573			265	2293;10433	136	138	268	268					0.026781660908227423
AAMYKSLEL	9	Unmodified	_AAMYKSLEL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.27099609375	2	513.270435	1024.52632	1.3002	0.00066734	-1.0621	-0.00054516	0.23804	0.00012218	513.2697843754129	39.903	0.32798	39.903	39.79	40.118	0					22	11	3	0	0	0	0.078509	1	15710	15710		85.161	10.906	1	391370			266	8095	137	139	269	269					0.015035784770134342
AAMYKSLEL	9	Unmodified	_AAMYKSLEL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2706298828125	2	513.270435	1024.52632	1.4484	0.00074343	-1.1308	-0.0005804	0.31763	0.00016303	513.2700513793777	39.849	0.23503	39.849	39.782	40.017	0					17	5	4	0	0	0	0.10506	1	15779	15779		78.264	21.543	1	645110			267	8095	137	139	270	270					0.015035784770134342
AANPHSFVF	9	Unmodified	_AANPHSFVF_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2455139160156	2	495.245609	988.476666	-0.4002	-0.0001982	-0.20175	-9.9914E-05	-0.60195	-0.00029811	495.245599602603	38.827	0.42958	38.827	38.702	39.131	0					37	16	4	0	0	0	0.44593	1	14761	14761		37.812	2.6108	1	522570			268	3674	138	140	271	271					-0.01803368416756257
AANVAPKF	8	Unmodified	_AANVAPKF_					0	0	0		CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant;CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant;ENSG00000074276|ENST00000261944|CDHR2;CDHR2|p.S141Cfs*13|1|0.21|ENSG00000074276|chr5:176574097-176574098|-/TGTAGAG|frameshift_variant;CDHR2|p.S155Cfs*10|1|0.1|ENSG00000074276|chr5:176574138-176574139|-/AT|frameshift_variant	CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant	CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.2302551269531	2	409.231971	816.449388	-1.4122	-0.00057793	-3.4532	-0.0014132	-4.8655	-0.0019911	409.2308091231451	18.683	0.086702	18.683	18.626	18.713	0					5	3	2	0	0	0	0.70055	1	4934	4934		33.516	0.70317	1	57268			269	456	139	141	272	272					0.033821480428514406
AANVGRVV	8	Unmodified	_AANVGRVV_					0	0	0		ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	393.2351379394531	2	393.235045	784.455536	0.57298	0.00022532	-0.57732	-0.00022702	-0.0043417	-1.7073E-06	393.2347265763565	22.321	0.15604	22.321	22.25	22.406	0					7	4	2	0	0	0	0.49887	1	6284	6284		60.294	17.819	1	254400			270	5517	140	142	273	273					0.054686662743733905
AANVGRVV	8	Unmodified	_AANVGRVV_					0	0	0		ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.2350769042969	2	393.235045	784.455536	0.70836	0.00027855	-0.95075	-0.00037387	-0.24239	-9.5318E-05	393.234638208646	22.667	0.13901	22.667	22.575	22.714	0					6	3	2	0	0	0	0.32408	1	7387	7387		79.939	25.175	1	246200			271	5517	140	142	274	274					0.054686662743733905
AANVGRVV	8	Unmodified	_AANVGRVV_					0	0	0		ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.2350158691406	2	393.235045	784.455536	0.88871	0.00034947	-0.8298	-0.00032631	0.058907	2.3164E-05	393.23469727378097	22.65	0.30088	22.65	22.516	22.817	0					12	7	2	0	0	0	0.32408	1	7399	7399		79.939	25.175	1	1534700			272	5517	140	142	275	275					0.054686662743733905
AANVGRVV	8	Unmodified	_AANVGRVV_					0	0	0		ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.2348327636719	2	393.235045	784.455536	0.1223	4.8094E-05	-0.48785	-0.00019184	-0.36555	-0.00014375	393.2348121327251	22.573	0.2599	22.573	22.417	22.677	0					11	5	3	0	0	0	0.32408	1	7647	7647		79.939	25.175	1	1156400			273	5517	140	142	276	276					0.054686662743733905
AANVGRVV	8	Unmodified	_AANVGRVV_					0	0	0		ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	393.2347412109375	2	393.235045	784.455536	0.21444	8.4325E-05	-0.03963	-1.5584E-05	0.17481	6.8741E-05	393.23501295876054	22.43	0.1592	22.43	22.345	22.505	0					5	3	2	0	0	0	0.32408	1	6675	6675		79.939	25.175	1	152080			274	5517	140	142	277	277					0.054686662743733905
AANVGRVV	8	Unmodified	_AANVGRVV_					0	0	0		ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.23492431640625	2	393.235045	784.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.566	1	22.566	22.066	23.066	0								0	0	0	1.7419	1	7524	7524		76.847	21.342	1				275	5517	140	142	278	278					0.054686662743733905
AAPAHRGTPDT	11	Unmodified	_AAPAHRGTPDT_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.2725219726562	2	547.272887	1092.53122	0.44484	0.00024345	-0.04163	-2.2783E-05	0.40321	0.00022067	547.2725567660285	34.861	0.13551	34.861	34.806	34.942	0					10	6	2	0	0	0	0.44903	1	11782	11782		47.96	0.30219	1	60078			276	7864	141	143	279	279					-0.011344013360030658
AAPATRAAL	9	Unmodified	_AAPATRAAL_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.24822998046875	2	421.248152	840.481751	-1.2404	-0.00052252	0.69172	0.00029139	-0.54868	-0.00023113	421.24847162314916	22.052	0.25592	22.052	21.92	22.176	0					18	8	3	0	0	0	0.1424	1	6418	6418		69.628	31.816	1	226150			277	4324	142	144	280	280					0.055129354458472335
AAPATRAAL	9	Unmodified	_AAPATRAAL_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.2480163574219	2	421.248152	840.481751	0.85667	0.00036087	-0.90528	-0.00038135	-0.048611	-2.0477E-05	421.2479421562788	22.261	0.45967	22.261	21.907	22.367	0					16	9	3	0	0	0	0.15163	1	7519	7519		67.494	6.5217	1	1328500			278	4324	142	144	281	281					0.055129354458472335
AAPATRAAL	9	Unmodified	_AAPATRAAL_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.2486572265625	2	421.248152	840.481751	-0.035796	-1.5079E-05	-0.073217	-3.0842E-05	-0.10901	-4.5922E-05	421.2481628552034	22.119	0.22783	22.119	21.988	22.216	0					9	5	2	0	0	0	0.19605	1	6523	6523		62.107	5.3864	1	141850			279	4324	142	144	282	282					0.055129354458472335
AAPATRAAL	9	Unmodified	_AAPATRAAL_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.2479248046875	2	421.248152	840.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.257	1	22.257	21.757	22.757	0								0	0	0	0.04624	1	7375	7375		87.696	32.92	1				280	4324	142	144	283	283					0.055129354458472335
AAPAYSRAL	9	Unmodified	_AAPAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7548828125	2	460.253434	918.492316	0.086854	3.9975E-05	-0.61024	-0.00028086	-0.52338	-0.00024089	460.25318409245494	27.445	0.56559	27.445	27.325	27.891	0					49	18	4	0	0	0	0.10915	1	8435	8435		77.318	14.011	1	1685600			281	2425	143	145	284	284					0.029809181002860896
AAPAYSRAL	9	Unmodified	_AAPAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.25311279296875	2	460.253434	918.492316	-0.8901	-0.00040967	0.14168	6.5208E-05	-0.74842	-0.00034446	460.2535265132926	27.469	0.61098	27.469	27.327	27.938	0					58	21	4	0	0	0	0.07136	1	8736	8736		87.696	48.89	1	2465400			282	2425	143	145	285	285					0.029809181002860896
AAPAYSRAL	9	Unmodified	_AAPAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.25341796875	2	460.253434	918.492316	-0.111	-5.1087E-05	-0.21464	-9.8791E-05	-0.32564	-0.00014988	460.2534389774245	27.514	0.38552	27.514	27.388	27.773	0					25	9	4	0	0	0	0.10915	1	9002	9002		77.318	34.921	1	636300			283	2425	143	145	286	286					0.029809181002860896
AAPAYSRAL	9	Unmodified	_AAPAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2536315917969	2	460.253434	918.492316	-0.062224	-2.8639E-05	-0.30752	-0.00014154	-0.36974	-0.00017017	460.25329040008654	27.54	0.42491	27.54	27.374	27.799	0					26	10	4	0	0	0	0.10915	1	8994	8994		77.318	34.921	1	2394100			284	2425	143	145	287	287					0.029809181002860896
AAPAYSRAL	9	Unmodified	_AAPAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2532043457031	2	460.253434	918.492316	-0.45458	-0.00020922	-0.29183	-0.00013431	-0.74641	-0.00034354	460.2533818930181	27.67	1.0184	27.67	27.357	28.375	0					52	20	6	0	0	0	0.07136	1	9915	9915		87.696	41.744	1	8694300			285	2425	143	145	288	288					0.029809181002860896
AAPDASWR	8	Unmodified	_AAPDASWR_					0	0	0			REV__TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant	REV__TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.21539306640625	2	437.214309	872.414065	0.24347	0.00010645	2.766	0.0012093	3.0094	0.0013158	437.2157070255353	19.422	0.13571	19.422	19.338	19.474	0					6	4	2	0	0	0	0.74405	1	5010	5010		27.882	1.0861	1	45675	+		286	16865	144	146	289	289					-0.027245144849530334
AAPDGTRNL	9	Unmodified	_AAPDGTRNL_					0	0	0		XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant;ENSG00000132953|ENST00000255305|XPO4	XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant	XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7383728027344	2	457.738148	913.461744	0.18495	8.466E-05	-0.77553	-0.00035499	-0.59057	-0.00027033	457.73775684236404	21.206	0.24723	21.206	21.064	21.311	0					9	5	2	0	0	0	0.41113	1	6096	6096		40.778	6.6056	1	230310			287	3826	145	147	290	290					0.0015513971522977954
AAPEGKRSL	9	Unmodified	_AAPEGKRSL_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.76385498046875	2	464.764166	927.513779	0.68417	0.00031798	-2.4224	-0.0011258	-1.7382	-0.00080787	464.7634947106983	16.571	0.80348	16.571	16.413	17.217	0					43	16	5	0	0	0	0.13726	1	4746	4746		70.816	5.3508	1	9970400			288	8017	146	148	291	291					0.047123031289856954
AAPEGKRSL	9	Unmodified	_AAPEGKRSL_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.76446533203125	2	464.764166	927.513779	-0.48572	-0.00022575	-0.38174	-0.00017742	-0.86746	-0.00040316	464.7642334352093	16.403	0.34751	16.403	16.259	16.607	0					28	9	4	0	0	0	0.24334	1	3863	3863		56.434	8.4743	1	663770			289	8017	146	148	292	292					0.047123031289856954
AAPEGLSRK	9	Unmodified	_AAPEGLSRK_					0	0	0			REV__ENSG00000178718|ENST00000322177|RPP25	REV__ENSG00000178718|ENST00000322177|RPP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7642822265625	2	464.764166	927.513779	-0.78835	-0.0003664	-0.33559	-0.00015597	-1.1239	-0.00052237	464.76434819589883	16.365	0.35312	16.365	16.24	16.593	0					39	11	5	0	0	0	0.41113	1	3885	3885		40.778	1.5253	1	1037500	+		290	16741	147	149	293	293					0.04712303128997064
AAPFRSAL	8	Unmodified	_AAPFRSAL_					0	0	0		ENSG00000175868|ENST00000324229|CALCB;nc|ENSG00000110680|P06881|CALCA;nc|ENSG00000110680|P01258-2|CALCA;ENSG00000110680|ENST00000331587|CALCA	ENSG00000175868|ENST00000324229|CALCB	ENSG00000175868|ENST00000324229|CALCB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.7374267578125	2	416.73742	831.460287	1.052	0.0004384	-1.2743	-0.00053106	-0.22233	-9.2652E-05	416.7368498887335	29.936	0.36603	29.936	29.773	30.139	0					18	9	3	0	0	0	0.54629	1	10719	10719		55.504	6.2934	1	802630			291	2633	148	150	294	294					0.03781550417136259
AAPGAVHPLT	10	Unmodified	_AAPGAVHPLT_					0	0	0		ENST00000358729.8_1_1:110163725-110168306:+|nuORF	ENST00000358729.8_1_1:110163725-110168306:+|nuORF	ENST00000358729.8_1_1:110163725-110168306:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.26123046875	2	467.261259	932.507966	-0.65689	-0.00030694	0.65043	0.00030392	-0.0064595	-3.0183E-06	467.2614550642622	33.996	0.19592	33.996	33.909	34.105	0					9	5	2	0	0	0	0.68218	1	12631	12631		24.203	0	1	148660			292	8838	149	151	295	295					0.03901204617318399
AAPGEARAM	9	Unmodified	_AAPGEARAM_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;ENST00000467401.1_1_9:96070551-96082671:+|nuORF	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.21563720703125	2	437.215995	872.417436	0.62549	0.00027347	-1.7974	-0.00078583	-1.1719	-0.00051236	437.21534498345363	19.749	0.48436	19.749	19.402	19.886	0					17	11	3	0	0	0	0.25716	1	6009	6009		54.776	26.894	1	452450			293	5777	150	152	296	296					-0.023875877025943737
AAPGEARAM	9	Unmodified	_AAPGEARAM_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;ENST00000467401.1_1_9:96070551-96082671:+|nuORF	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2157287597656	2	437.215995	872.417436	-0.91978	-0.00040214	0.18249	7.9786E-05	-0.7373	-0.00032236	437.2160768453756	19.411	0.10687	19.411	19.349	19.456	0					5	3	2	0	0	0	0.48389	1	5251	5251		34.173	5.9183	1	60931			294	5777	150	152	297	297					-0.023875877025943737
AAPGEARAM	9	Unmodified	_AAPGEARAM_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;ENST00000467401.1_1_9:96070551-96082671:+|nuORF	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2159118652344	2	437.215995	872.417436	-0.55832	-0.00024411	-0.070409	-3.0784E-05	-0.62873	-0.00027489	437.21594560071395	19.599	0.41787	19.599	19.492	19.91	0					10	8	2	0	0	0	0.27249	1	6100	6100		52.937	2.9122	1	458750			295	5777	150	152	298	298					-0.023875877025943737
AAPGEARAM	9	Unmodified	_AAPGEARAM_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;ENST00000467401.1_1_9:96070551-96082671:+|nuORF	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2159729003906	2	437.215995	872.417436	0.72355	0.00031635	-1.1291	-0.00049364	-0.40551	-0.00017729	437.215524216407	19.631	0.2667	19.631	19.524	19.791	0					8	5	2	0	0	0	0.12239	1	6119	6119		74.255	30.138	1	631830			296	5777	150	152	299	299					-0.023875877025943737
AAPGKERSL	9	Unmodified	_AAPGKERSL_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7637939453125	2	464.764166	927.513779	0.70615	0.00032819	-1.9204	-0.00089251	-1.2142	-0.00056432	464.7634534207657	16.589	0.50567	16.589	16.434	16.94	0					36	10	6	0	0	0	0.16806	1	4608	4608		65.465	0	1	7541100	+		297	16893	151	153	300	300					0.047123031289856954
AAPGLIGNVM	10	Unmodified	_AAPGLIGNVM_					0	0	0		ENSG00000112305|ENST00000370455|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;nc|ENSG00000112305|Q8IYB5-3|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7576599121094	2	471.757495	941.500437	2.4728	0.0011666	-2.7139	-0.0012803	-0.24109	-0.00011374	471.75607405108894	47.977	0.1783	47.977	47.934	48.112	0					11	9	2	0	0	0	0.51121	1	19101	19101		44.117	8.9161	1	63473			298	2734	152	154	301	301					0.027347290254056134
AAPGPHVAL	9	Unmodified	_AAPGPHVAL_					0	0	0		ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	416.73779296875	2	416.73742	831.460287	0.52504	0.0002188	-0.33321	-0.00013886	0.19183	7.9943E-05	416.7371841672569	29.648	0.17355	29.648	29.55	29.723	0					12	6	2	0	0	0	0.43174	1	9367	9367		39.021	9.18	1	141160			299	5168	153	155	302	302					0.03781550417136259
AAPGPHVAL	9	Unmodified	_AAPGPHVAL_					0	0	0		ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.7373352050781	2	416.73742	831.460287	0.96408	0.00040177	-1.0823	-0.00045102	-0.11818	-4.9249E-05	416.7369461818914	29.904	0.49805	29.904	29.65	30.148	0					23	10	3	0	0	0	0.023548	1	11112	11112		116.12	30.213	1	1549400			300	5168	153	155	303	303					0.03781550417136259
AAPGPHVAL	9	Unmodified	_AAPGPHVAL_					0	0	0		ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.73773193359375	2	416.73742	831.460287	-0.056664	-2.3614E-05	-0.034942	-1.4562E-05	-0.091606	-3.8176E-05	416.73741869692736	29.73	0.30888	29.73	29.539	29.848	0					12	8	2	0	0	0	0.43174	1	10014	10014		39.021	9.18	1	194900			301	5168	153	155	304	304					0.03781550417136259
AAPGPHVAL	9	Unmodified	_AAPGPHVAL_					0	0	0		ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	ENSG00000156381|ENST00000286918|ANKRD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.7373962402344	2	416.73742	831.460287	1.0553	0.00043978	-1.1859	-0.00049421	-0.13062	-5.4433E-05	416.73681380012664	29.883	0.56459	29.883	29.681	30.245	0					27	11	4	0	0	0	0.12946	1	10987	10987		72.62	12.216	1	1100300			302	5168	153	155	305	305					0.03781550417136259
AAPIDNEGM	9	Unmodified	_AAPIDNEGM_					0	0	0			REV__ENST00000407977.6_1_17:56493146-56493257:-|nuORF	REV__ENST00000407977.6_1_17:56493146-56493257:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.20404052734375	2	459.205292	916.396032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.636	1	49.636	49.136	50.136	0								0	0	0	0.37146	1	19626	19626		19.36	0	1		+		303	18986	154	156	306	306					-0.06551017521962876
AAPLRLIAA	9	Unmodified	_AAPLRLIAA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.N20D|1|0.19|ENSG00000112159|chr6:89819550-89819550|T/C|missense_variant;MDN1|p.D409Rfs*22|1|0.16|ENSG00000112159|chr6:89789788-89789789|-/G|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.28961181640625	2	448.28982	894.565087	0.61737	0.00027676	-1.2353	-0.00055375	-0.61789	-0.00027699	448.28918952260886	37.672	0.2735	37.672	37.525	37.798	0					19	8	3	0	0	0	0.43426	1	14277	14277		38.806	1.647	1	296370			304	2718	155	157	307	307					0.1135867189370856
AAPLRLIAA	9	Unmodified	_AAPLRLIAA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.N20D|1|0.19|ENSG00000112159|chr6:89819550-89819550|T/C|missense_variant;MDN1|p.D409Rfs*22|1|0.16|ENSG00000112159|chr6:89789788-89789789|-/G|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2892150878906	2	448.28982	894.565087	-1.1767	-0.00052748	0.6945	0.00031134	-0.48216	-0.00021615	448.2901262591699	37.378	0.25996	37.378	37.302	37.562	0					24	14	2	0	0	0	0.57706	1	12628	12628		24.203	4.8428	1	200650			305	2718	155	157	308	308					0.1135867189370856
AAPLRLIAA	9	Unmodified	_AAPLRLIAA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.N20D|1|0.19|ENSG00000112159|chr6:89819550-89819550|T/C|missense_variant;MDN1|p.D409Rfs*22|1|0.16|ENSG00000112159|chr6:89789788-89789789|-/G|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2896728515625	2	448.28982	894.565087	-0.32238	-0.00014452	-0.034714	-1.5562E-05	-0.3571	-0.00016008	448.2898389552875	37.393	0.22822	37.393	37.306	37.534	0					23	11	3	0	0	0	0.39123	1	13367	13367		42.474	17.024	1	321310			306	2718	155	157	309	309					0.1135867189370856
AAPMSTSVM	9	Unmodified	_AAPMSTSVM_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7062072753906	2	447.706614	893.398675	0.61239	0.00027417	-1.3328	-0.00059671	-0.72042	-0.00032254	447.70593358305524	35.231	0.20222	35.231	35.115	35.317	0					6	5	2	0	0	0	0.45358	1	13208	13208		37.159	1.9584	1	120320			307	7431	156	158	310	310					-0.05228885388646631
AAPPHGVAL	9	Unmodified	_AAPPHGVAL_					0	0	0			REV__ENST00000529336.1_1_8:10971599-11058129:-|nuORF	REV__ENST00000529336.1_1_8:10971599-11058129:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.7373352050781	2	416.73742	831.460287	-2.3955	-0.00099828	1.8059	0.00075259	-0.58954	-0.00024568	416.738307054313	29.699	0.27576	29.699	29.563	29.839	0					12	7	3	0	0	0	0.52436	1	10008	10008		29.842	0	1	197560	+		308	18187	157	159	311	311					0.03781550417136259
AAPPPGAA	8	Unmodified	_AAPPPGAA_					0	0	0			REV__ENST00000360947.7_1_14:21561809-21566788:-|nuORF	REV__ENST00000360947.7_1_14:21561809-21566788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.17633056640625	2	326.176664	650.338775	-0.057282	-1.8684E-05	-1.6285	-0.00053117	-1.6858	-0.00054986	326.17603336870843	51.521	0.18339	51.521	51.469	51.653	0					13	11	2	0	0	0	0.78431	1	15385	15385		10.185	0	1	66710	+		309	18563	158	160	312	312					-0.00038071945380124816
AAPRAPSAL	9	Unmodified	_AAPRAPSAL_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.2476501464844	2	427.248152	852.481751	-0.23015	-9.8333E-05	-0.074178	-3.1693E-05	-0.30433	-0.00013003	427.2480855675577	25.334	0.36144	25.334	25.11	25.471	0					27	12	3	0	0	0	0.33044	1	7590	7590		47.657	6.8792	1	366680			310	6879	159	161	313	313					0.049609354458425514
AAPRAPSAL	9	Unmodified	_AAPRAPSAL_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.2479248046875	2	427.248152	852.481751	-0.67079	-0.00028659	0.23401	9.9982E-05	-0.43677	-0.00018661	427.2482655987702	25.62	0.6377	25.62	25.404	26.042	0					27	13	3	0	0	0	0.17854	1	8750	8750		64.207	7.4862	1	1787600			311	6879	159	161	314	314					0.049609354458425514
AAPRAPSAL	9	Unmodified	_AAPRAPSAL_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.2477111816406	2	427.248152	852.481751	-2.7437	-0.0011722	2.3818	0.0010176	-0.36187	-0.00015461	427.2490978431061	25.416	0.25696	25.416	25.282	25.539	0					14	6	3	0	0	0	0.41113	1	8071	8071		40.778	6.6056	1	202950			312	6879	159	161	315	315					0.049609354458425514
AAPRSLPIP	9	Unmodified	_AAPRSLPIP_					0	0	0			REV__ENST00000474639.5_1_9:131822782-131825881:+|nuORF	REV__ENST00000474639.5_1_9:131822782-131825881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2795715332031	2	461.279452	920.544351	-0.70639	-0.00032584	2.0043	0.00092456	1.2979	0.00059871	461.2804838656523	32.363	0.4554	32.363	32.212	32.668	0					19	11	2	0	0	0	0.54267	1	11852	11852		27.882	1.0861	1	248820	+		313	15381	160	162	316	316					0.08090081514046688
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2427673339844	2	443.243067	884.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.207	1	23.207	22.707	23.707	0								0	0	0	0.11159	1	6680	6680		68.846	22.874	1				314	2508	161	163	317	317					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2425537109375	2	443.243067	884.47158	-1.1554	-0.00051213	0.61855	0.00027417	-0.53686	-0.00023796	443.2432448324982	23.249	0.22184	23.249	23.179	23.4	0					12	7	3	0	0	0	0.12834	1	6951	6951		72.879	12.585	1	872290			315	2508	161	163	318	318					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.24273681640625	2	443.243067	884.47158	0.51753	0.00022939	-1.2265	-0.00054364	-0.70897	-0.00031425	443.24259565495214	23.453	0.4669	23.453	23.295	23.762	0					14	9	3	0	0	0	0.02953	1	8093	8093		109.48	60.037	1	3290600			316	2508	161	163	319	319					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2434997558594	2	443.243067	884.47158	0.41402	0.00018351	-1.4042	-0.00062242	-0.99023	-0.00043891	443.24241654505096	23.318	0.10757	23.318	23.218	23.326	0					4	2	2	0	0	0	0.19605	1	7088	7088		62.107	29.295	1	98728			317	2508	161	163	320	320					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.24267578125	2	443.243067	884.47158	-0.50708	-0.00022476	-0.14717	-6.5232E-05	-0.65425	-0.00028999	443.24295032870486	23.301	0.19811	23.301	23.203	23.401	0					8	4	3	0	0	0	0.063171	1	7082	7082		90.601	42.944	1	640680			318	2508	161	163	321	321					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.24273681640625	2	443.243067	884.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.303	1	23.303	22.803	23.803	0								0	0	0	0.069826	1	7090	7090		80.455	31.013	1				319	2508	161	163	322	322					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.24285888671875	2	443.243067	884.47158	-0.49733	-0.00022044	-0.024174	-1.0715E-05	-0.52151	-0.00023115	443.2430646445089	23.442	0.21643	23.442	23.335	23.552	0					9	4	3	0	0	0	0.13726	1	7960	7960		70.816	28.42	1	1081400			320	2508	161	163	323	323					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2427978515625	2	443.243067	884.47158	0.76176	0.00033764	-1.2787	-0.00056675	-0.51689	-0.00022911	443.24246663718213	23.427	0.41335	23.427	23.318	23.732	0					13	8	3	0	0	0	0.02953	1	7952	7952		109.48	56.542	1	2655400			321	2508	161	163	324	324					0.024723277206248895
AAPSAAREL	9	Unmodified	_AAPSAAREL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2428283691406	2	443.243067	884.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.437	1	23.437	22.937	23.937	0								0	0	0	0.010168	1	7947	7947		109.48	48.506	1				322	2508	161	163	325	325					0.024723277206248895
AAPSATAACM	10	Oxidation (M)	_AAPSATAACM(Oxidation (M))_		AAPSATAACM(1)		AAPSATAACM(42)	0	0	1			REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.1936950683594	2	455.193871	908.373188	0.72142	0.00032839	-1.8615	-0.00084733	-1.1401	-0.00051895	455.1933100979593	26.87	0.3614	26.87	26.71	27.072	0					19	7	4	0	0	0	0.52707	1	9706	9706		42.396	13.247	1	1266400	+		323	20906	162	164	326	326		748			-0.08466359911096788
AAPSCSMAV	9	Carbamidomethyl (C),Oxidation (M)	_AAPSC(Carbamidomethyl (C))SM(Oxidation (M))AV_	AAPSC(1)SMAV	AAPSCSM(1)AV	AAPSC(66)SMAV	AAPSCSM(66)AV	0	1	1			REV__ENST00000399753.2_1_16:1991259-1993105:-|nuORF	REV__ENST00000399753.2_1_16:1991259-1993105:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.19378662109375	2	455.193871	908.373188	0.72781	0.00033129	-1.5289	-0.00069594	-0.80109	-0.00036465	455.1933685691436	26.851	0.29814	26.851	26.76	27.058	0					18	7	4	0	0	0	0.16524	1	9324	9324		65.803	14.468	1	656160	+		324	18937	163	165	327	327	679	696			-0.08466359911096788
AAPTAQKSL	9	Unmodified	_AAPTAQKSL_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.7529602050781	2	443.753267	885.491981	-0.29178	-0.00012948	-0.090445	-4.0135E-05	-0.38223	-0.00016961	443.75321782568005	19.732	0.13954	19.732	19.626	19.766	0					8	4	2	0	0	0	0.41958	1	5139	5139		40.058	5.8856	1	214440			325	5272	164	166	328	328					0.04465498380432109
AAPTAQKSL	9	Unmodified	_AAPTAQKSL_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7529602050781	2	443.753267	885.491981	-0.36306	-0.00016111	0.15082	6.6927E-05	-0.21224	-9.4183E-05	443.75310670936614	20.059	0.24068	20.059	19.954	20.195	0					13	5	4	0	0	0	0.11411	1	6149	6149		76.17	14.062	1	1510800			326	5272	164	166	329	329					0.04465498380432109
AAPTAQKSL	9	Unmodified	_AAPTAQKSL_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7528991699219	2	443.753267	885.491981	0.52995	0.00023516	-1.3887	-0.00061625	-0.85878	-0.00038109	443.7524275502896	19.918	0.2199	19.918	19.859	20.079	0					11	4	3	0	0	0	0.21419	1	6388	6388		59.931	2.1195	1	1100200			327	5272	164	166	330	330					0.04465498380432109
AAPTAQKSL	9	Unmodified	_AAPTAQKSL_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.7530212402344	2	443.753267	885.491981	-2.8443	-0.0012622	2.6718	0.0011856	-0.17249	-7.6541E-05	443.75413513705854	19.776	0.13811	19.776	19.689	19.827	0					8	3	3	0	0	0	0.50858	1	5429	5429		31.53	6.0796	1	253390			328	5272	164	166	331	331					0.04465498380432109
AAPTPGRAL	9	Unmodified	_AAPTPGRAL_					0	0	0		SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant;ENSG00000174705|ENST00000311601|SH3PXD2B	SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.2479553222656	2	427.248152	852.481751	0.92534	0.00039535	-1.3867	-0.00059247	-0.46137	-0.00019712	427.247489225506	23.453	0.26654	23.453	23.295	23.562	0					15	5	4	0	0	0	0.33044	1	8072	8072		47.657	3.5405	1	1063000			329	22392	165	167	332	332					0.049609354458425514
AAPTPGRAL	9	Unmodified	_AAPTPGRAL_					0	0	0		SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant;ENSG00000174705|ENST00000311601|SH3PXD2B	SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.248046875	2	427.248152	852.481751	-0.14213	-6.0726E-05	-0.40207	-0.00017178	-0.5442	-0.00023251	427.2479708022624	23.258	0.1941	23.258	23.162	23.356	0					8	4	2	0	0	0	0.5741	1	7058	7058		24.519	2.5593	1	390570			330	22392	165	167	333	333					0.049609354458425514
AAPTVRAPA	9	Unmodified	_AAPTVRAPA_					0	0	0		ENST00000428449.5_1_7:121945734-121946145:+|nuORF	ENST00000428449.5_1_7:121945734-121946145:+|nuORF	ENST00000428449.5_1_7:121945734-121946145:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.2479248046875	2	427.248152	852.481751	-0.48627	-0.00020776	-0.17943	-7.666E-05	-0.6657	-0.00028442	427.2480525438165	23.424	0.31577	23.424	23.263	23.578	0					15	6	4	0	0	0	0.45358	1	8077	8077		37.159	0	1	898690			331	9464	166	168	334	334					0.049609354458425514
AAPTVRAPA	9	Unmodified	_AAPTVRAPA_					0	0	0		ENST00000428449.5_1_7:121945734-121946145:+|nuORF	ENST00000428449.5_1_7:121945734-121946145:+|nuORF	ENST00000428449.5_1_7:121945734-121946145:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.2476806640625	2	427.248152	852.481751	0.16776	7.1675E-05	-0.46854	-0.00020018	-0.30078	-0.00012851	427.2478848659273	23.271	0.1901	23.271	23.136	23.326	0					9	4	3	0	0	0	0.53083	1	7064	7064		29.15	0	1	138090			332	9464	166	168	335	335					0.049609354458425514
AAPTVRAPA	9	Unmodified	_AAPTVRAPA_					0	0	0		ENST00000428449.5_1_7:121945734-121946145:+|nuORF	ENST00000428449.5_1_7:121945734-121946145:+|nuORF	ENST00000428449.5_1_7:121945734-121946145:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.2479248046875	2	427.248152	852.481751	-0.40571	-0.00017334	-0.10249	-4.3788E-05	-0.5082	-0.00021713	427.24812922968545	23.393	0.36813	23.393	23.184	23.552	0					19	7	4	0	0	0	0.35045	1	7937	7937		45.952	0	1	1665500			333	9464	166	168	336	336					0.049609354458425514
AAQAHTREL	9	Unmodified	_AAQAHTREL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.7653503417969	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.33	1	16.33	15.83	16.83	0								0	0	0	0.33029	1	3697	3697		29.17	7.2102	1				334	2251	167	169	337	337					0.016905174979115145
AAQAHTREL	9	Unmodified	_AAQAHTREL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7654724121094	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.314	1	16.314	15.814	16.814	0								0	0	0	0.045272	1	3887	3887		88.177	40.261	1				335	2251	167	169	338	338					0.016905174979115145
AAQAHTREL	9	Unmodified	_AAQAHTREL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7644958496094	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.546	1	16.546	16.046	17.046	0								0	0	0	0.00049573	1	4748	4748		138.06	60.745	1				336	2251	167	169	339	339					0.016905174979115145
AAQAHTREL	9	Unmodified	_AAQAHTREL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.76544189453125	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.365	1	16.365	15.865	16.865	0								0	0	0	0.084509	1	3865	3865		76.17	28.254	1				337	2251	167	169	340	340					0.016905174979115145
AAQAHTREL	9	Unmodified	_AAQAHTREL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7645568847656	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.354	1	16.354	15.854	16.854	0								0	0	0	0.069826	1	3860	3860		80.455	23.734	1				338	2251	167	169	341	341					0.016905174979115145
AAQAHTREL	9	Unmodified	_AAQAHTREL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7645263671875	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.593	1	16.593	16.093	17.093	0								0	0	0	0.061959	1	4624	4624		82.75	19.444	1				339	2251	167	169	342	342					0.016905174979115145
AAQALLAESP	10	Unmodified	_AAQALLAESP_					0	0	0			REV__nc|ENSG00000167595|Q2NL68|PROSER3	REV__nc|ENSG00000167595|Q2NL68|PROSER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7633056640625	2	485.763832	969.513111	0.35121	0.0001706	-0.1259	-6.1158E-05	0.2253	0.00010944	485.76379619786377	20.901	0.25836	20.901	20.751	21.009	0					9	6	2	0	0	0	0.49411	1	5953	5953		45.972	0.020292	1	88916	+		340	16198	168	170	343	343					0.027134636892810704
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.788330078125	2	559.788035	1117.56152	1.431	0.00080108	0.87238	0.00048835	2.3034	0.0012894	559.7882700955593	22.92	0.12907	22.92	22.85	22.979	0					8	4	2	0	0	0	0.17498	1	6566	6566		77.288	29.63	1	76686			341	3170	169	171	344	344					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.78857421875	2	559.788035	1117.56152	1.7964	0.0010056	-1.2045	-0.00067425	0.5919	0.00033134	559.7874096296854	23.268	0.19174	23.268	23.177	23.369	0					9	4	3	0	0	0	0.071119	1	7671	7671		96.756	48.154	1	982350			342	3170	169	171	345	345					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.7886962890625	2	559.788035	1117.56152	0.12381	6.9305E-05	0.99559	0.00055732	1.1194	0.00062662	559.7886039528411	22.973	0.21821	22.973	22.908	23.126	0					11	7	2	0	0	0	0.050009	1	6833	6833		105.17	44.193	1	172670			343	3170	169	171	346	346					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.788330078125	2	559.788035	1117.56152	1.7819	0.00099748	-0.97976	-0.00054846	0.80212	0.00044902	559.7875639727982	23.204	0.21754	23.204	23.095	23.312	0					5	4	2	0	0	0	0.028034	1	7949	7949		115.91	59.282	1	987970			344	3170	169	171	347	347					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.7890625	2	559.788035	1117.56152	1.0669	0.00059723	-0.42973	-0.00024056	0.63715	0.00035667	559.7880223388468	23.038	0.14199	23.038	22.952	23.094	0					5	3	2	0	0	0	0.092761	1	6957	6957		91.469	31.538	1	119040			345	3170	169	171	348	348					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.788330078125	2	559.788035	1117.56152	1.8247	0.0010214	-0.67016	-0.00037515	1.1545	0.00064628	559.7874670853759	23.166	0.36216	23.166	22.922	23.284	0					18	7	4	0	0	0	0.20322	1	7829	7829		73.9	25.299	1	1058700			346	3170	169	171	349	349					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.788330078125	2	559.788035	1117.56152	3.4698	0.0019423	-1.0328	-0.00057815	2.437	0.0013642	559.7875785319591	23.133	0.4641	23.133	22.905	23.369	0					22	9	3	0	0	0	0.038896	1	7823	7823		110.54	52.311	1	916760			347	3170	169	171	350	350					0.007439125385189982
AAQEKKFAV	9	Unmodified	_AAQEKKFAV_					0	0	0		HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant;HFM1|p.N1388Tfs*37|1|0.26|ENSG00000162669|chr1:91262316-91262316|T/-|frameshift_variant;ENSG00000162669|ENST00000370425|HFM1;nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF;HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant;HFM1|p.K1137Nfs*44|1|0.18|ENSG00000162669|chr1:91277043-91277043|T/-|frameshift_variant	HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant	HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2812194824219	2	496.282192	990.549831	-1.1968	-0.00059394	-0.78572	-0.00038994	-1.9825	-0.00098389	496.2819384857344	35.981	0.10648	35.981	35.925	36.031	0					9	5	2	0	0	0	0.51817	1	12192	12192		30.504	0	1	39024			348	5486	170	172	351	351					0.05417760305851971
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.775634765625	2	487.776219	973.537886	-0.068125	-3.323E-05	-0.90878	-0.00044328	-0.9769	-0.00047651	487.77579098623795	16.132	0.16274	16.132	16.04	16.202	0					12	7	3	0	0	0	0.055856	1	3616	3616		93.195	29.889	1	271910			349	2007	171	173	352	352					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7760314941406	2	487.776219	973.537886	0.73605	0.00035903	-1.7745	-0.00086558	-1.0385	-0.00050655	487.775445298231	16.456	0.35699	16.456	16.275	16.632	0					15	8	3	0	0	0	0.00012896	1	4453	4453		191.63	79.977	1	2729600			350	2007	171	173	353	353					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.5198059082031	3	325.519905	973.537886	0.63833	0.00020779	-0.8426	-0.00027428	-0.20428	-6.6497E-05	325.5196479328338	16.456	0.14231	16.456	16.362	16.504	0					5	3	2	0	0	0	0.25109	1	4475	4475		62.107	27.935	1	510610			351	2007	171	173	354	354					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7759704589844	2	487.776219	973.537886	-1.2455	-0.00060755	0.73737	0.00035967	-0.50818	-0.00024788	487.7765406866341	16.133	0.096815	16.133	16.069	16.166	0					5	3	2	0	0	0	0.24095	1	3814	3814		56.721	16.148	1	137700			352	2007	171	173	355	355					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.5198974609375	3	325.519905	973.537886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.416	1	16.416	15.916	16.916	0								0	0	0	0.20652	1	4687	4687		76.774	32.657	1				353	2007	171	173	356	356					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.77587890625	2	487.776219	973.537886	-0.21548	-0.0001051	-0.73432	-0.00035818	-0.9498	-0.00046329	487.77593446828234	16.158	0.14142	16.158	16.099	16.241	0					8	4	3	0	0	0	0.023074	1	3780	3780		116.9	31.544	1	238560			354	2007	171	173	357	357					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	325.5197448730469	3	325.519905	973.537886	0.0087825	2.8589E-06	-0.44556	-0.00014504	-0.43678	-0.00014218	325.5197763563794	16.409	0.16678	16.409	16.3	16.466	0					7	3	3	0	0	0	0.099922	1	4527	4527		107.01	38.221	1	348090			355	2007	171	173	358	358					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.77581787109375	2	487.776219	973.537886	-0.53122	-0.00025912	-0.4538	-0.00022135	-0.98502	-0.00048047	487.77602981880653	16.409	0.46608	16.409	16.2	16.666	0					16	9	2	0	0	0	0.087861	1	4547	4547		82.241	13.454	1	1339900			356	2007	171	173	359	359					0.05005820291000873
AAQKNMALK	9	Unmodified	_AAQKNMALK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.77593994140625	2	487.776219	973.537886	0.80244	0.00039141	-1.6965	-0.0008275	-0.89404	-0.00043609	487.77557673234753	16.392	0.31616	16.392	16.183	16.499	0					13	6	3	0	0	0	0.019882	1	4538	4538		122.18	33.533	1	2482800			357	2007	171	173	360	360					0.05005820291000873
AAQLDNQP	8	Unmodified	_AAQLDNQP_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-3|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-3|CHD1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.7112731933594	2	428.711599	855.408646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.603	1	17.603	17.103	18.103	0								0	0	0	1.7419	1	4229	4229		13.775	0.81615	1		+		358	14633	172	174	361	361					-0.024842380674272135
AAQNSRLSL	9	Unmodified	_AAQNSRLSL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2669372558594	2	480.267073	958.519593	-0.18349	-8.8126E-05	-0.13932	-6.6911E-05	-0.32281	-0.00015504	480.26719349931045	27.456	0.30197	27.456	27.321	27.623	0					16	7	4	0	0	0	0.054723	1	9582	9582		93.598	5.9011	1	648270			359	1023	173	175	362	362					0.03867401640661683
AAQNSRLSL	9	Unmodified	_AAQNSRLSL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2669372558594	2	480.267073	958.519593	0.67292	0.00032318	-1.4423	-0.00069267	-0.76934	-0.00036949	480.266320397677	27.448	0.5098	27.448	27.203	27.713	0					15	10	2	0	0	0	0.22823	1	9967	9967		58.246	8.7102	1	467990			360	1023	173	175	363	363					0.03867401640661683
AAQNSRLSL	9	Unmodified	_AAQNSRLSL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2667236328125	2	480.267073	958.519593	2.3161	0.0011124	-2.7587	-0.0013249	-0.44258	-0.00021255	480.2658290494105	27.382	0.37286	27.382	27.272	27.645	0					13	7	3	0	0	0	0.082776	1	9803	9803		83.647	20.113	1	1084400			361	1023	173	175	364	364					0.03867401640661683
AAQTGTRWNK	10	Unmodified	_AAQTGTRWNK_					0	0	0		ENSG00000198258|ENST00000586895|UBL5;ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7969970703125	2	566.796529	1131.5785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.965	1	16.965	16.465	17.465	0								0	0	0	0.23484	1	4954	4954		59.931	15.554	1				362	7545	174	176	365	365					0.01797877934995995
AARALRGAT	9	Unmodified	_AARALRGAT_					0	0	0			REV__ENSG00000168806|ENST00000305641|LCMT2	REV__ENSG00000168806|ENST00000305641|LCMT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7637023925781	2	443.764501	885.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.078	1	47.078	46.578	47.578	0								0	0	0	0.3368	1	18814	18814		27.882	7.8855	1		+		363	16279	175	177	366	366					0.0671114256869032
AARERIKQQI	10	Unmodified	_AARERIKQQI_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.9118957519531	3	404.910561	1211.70985	3.1301	0.0012674	0.23867	9.6642E-05	3.3687	0.001364	404.91060056418644	22.813	1.111	22.813	22.605	23.716	0					55	22	4	0	0	0	0.60281	1	7654	7654		33.922	33.922	1	2776300			364	4605	176	178	367	367					0.11246688302890107
AARFTPGRR	9	Unmodified	_AARFTPGRR_					0	0	0		ENST00000295903.8_2_3:64532480-64532591:-|nuORF	ENST00000295903.8_2_3:64532480-64532591:-|nuORF	ENST00000295903.8_2_3:64532480-64532591:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.5340576171875	3	344.533425	1030.57845	3.6435	0.0012553	-1.0616	-0.00036576	2.5819	0.00088956	344.5330405270405	31.595	0.14441	31.595	31.529	31.674	0					7	5	2	0	0	0	0.55379	1	10480	10480		26.693	3.1702	1	60337			365	8453	177	179	368	368					0.06437922725649514
AARGDPKR	8	Unmodified	_AARGDPKR_					0	0	0		MAN1A1|p.V72Gfs*93|1|0.16|ENSG00000111885|chr6:119348851-119348852|-/C|frameshift_variant	MAN1A1|p.V72Gfs*93|1|0.16|ENSG00000111885|chr6:119348851-119348852|-/C|frameshift_variant	MAN1A1|p.V72Gfs*93|1|0.16|ENSG00000111885|chr6:119348851-119348852|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.7469787597656	2	435.74885	869.483148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.315	1	17.315	16.815	17.815	0								0	0	0	1.7419	1	4107	4107		29.15	0	1				366	11344	178	180	369	369					0.04318569534609651
AARGKGKP	8	Unmodified	_AARGKGKP_					0	0	0			REV__nc|ENSG00000112242|O00716-2|E2F3	REV__nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.7429504394531	2	392.743037	783.471521	0.88615	0.00034803	-0.97443	-0.0003827	-0.088277	-3.467E-05	392.74262816062776	12.387	0.22353	12.387	12.326	12.549	0					9	7	2	0	0	0	0.7764	1	2591	2591		4.6817	0	1	148000	+		367	13994	179	181	370	370					0.07112372511278409
AARGNKKA	8	Unmodified	_AARGNKKA_					0	0	0		H2AFY2|p.D70G|1|0.34|ENSG00000099284|chr10:70090096-70090096|A/G|missense_variant	H2AFY2|p.D70G|1|0.34|ENSG00000099284|chr10:70090096-70090096|A/G|missense_variant	H2AFY2|p.D70G|1|0.34|ENSG00000099284|chr10:70090096-70090096|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	408.2445983886719	2	408.245944	814.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.281	1	18.281	17.781	18.781	0								0	0	0	1.7419	1	4526	4526		33.516	8.0654	1				368	11177	180	182	371	371					0.06267471022943027
AARHAHKPALR	11	Unmodified	_AARHAHKPALR_					0	0	0		ENST00000429224.1_1_9:139440803-139442492:+|nuORF	ENST00000429224.1_1_9:139440803-139442492:+|nuORF	ENST00000429224.1_1_9:139440803-139442492:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.90997314453125	3	409.910895	1226.71086	-2.2998	-0.00094272	0.814	0.00033367	-1.4858	-0.00060905	409.9112766078842	20.685	0.23934	20.685	20.586	20.825	0					12	5	3	0	0	0	0.6208	1	5854	5854		35.178	35.178	1	779370			369	9472	181	183	372	372					0.10656947462439348
AARLITKPG	9	Unmodified	_AARLITKPG_					0	0	0			REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7923278808594	2	463.792727	925.5709	-0.44205	-0.00020502	0.064201	2.9776E-05	-0.37785	-0.00017524	463.79274106519586	28.194	0.16538	28.194	28.108	28.273	0					7	5	2	0	0	0	0.61124	1	8781	8781		18.324	0.95945	1	60700	+		370	15089	182	184	373	373					0.1051377040537318
AARPRPGG	8	Unmodified	_AARPRPGG_					0	0	0		ENST00000533069.1_1_11:394244-396720:+|nuORF;ENST00000589123.5_2_19:3462863-3463967:+|nuORF	ENST00000533069.1_1_11:394244-396720:+|nuORF	ENST00000533069.1_1_11:394244-396720:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.2249755859375	2	391.225011	780.435469	0.47545	0.00018601	-0.38456	-0.00015045	0.09089	3.5559E-05	391.2247396074221	42.243	1.7431	42.243	41.477	43.22	0					111	48	3	0	0	0	0.72892	1	17166	17166		29.842	1.5873	1	319650			371	10457	183	185	374	374					0.03646915334422829
AARRHLHTRPN	11	Unmodified	_AARRHLHTRPN_					0	0	0		ENST00000267396.8_1_14:23356244-23356376:+|nuORF	ENST00000267396.8_1_14:23356244-23356376:+|nuORF	ENST00000267396.8_1_14:23356244-23356376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.585693359375	3	443.585071	1327.73338	0.52609	0.00023336	0.69449	0.00030806	1.2206	0.00054143	443.58544290616896	16.322	0.36623	16.322	16.263	16.63	0					15	7	4	0	0	0	0.78104	1	4654	4654		28.577	28.577	1	2263200			372	8361	184	186	375	375					0.08262546860055409
AARRPPGG	8	Unmodified	_AARRPPGG_					0	0	0			REV__ENST00000409001.5_1_2:182756891-182760783:+|nuORF	REV__ENST00000409001.5_1_2:182756891-182760783:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.22491455078125	2	391.225011	780.435469	-0.12552	-4.9105E-05	0.28296	0.0001107	0.15745	6.1598E-05	391.2250495168464	44.302	1.5378	44.302	43.399	44.937	0					131	89	2	0	0	0	0.8006	1	16518	16518		20.482	20.482	1	196140	+		373	18987	185	187	376	376					0.03646915334422829
AARRPPGG	8	Unmodified	_AARRPPGG_					0	0	0			REV__ENST00000409001.5_1_2:182756891-182760783:+|nuORF	REV__ENST00000409001.5_1_2:182756891-182760783:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2247009277344	2	391.225011	780.435469	0.33996	0.000133	-0.20136	-7.8776E-05	0.13861	5.4227E-05	391.2247871165222	42.351	1.3193	42.351	41.916	43.235	0					89	64	3	0	0	0	0.74117	1	16703	16703		28.254	5.2176	1	207150	+		374	18987	185	187	377	377					0.03646915334422829
AARTSVPG	8	Unmodified	_AARTSVPG_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.7116394042969	2	379.711402	757.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.766	1	34.766	34.266	35.266	0								0	0	0	1.7419	1	11739	11739		15.636	0	1		+		375	15262	186	188	378	378					0.019843870033810163
AARWTRWK	8	Unmodified	_AARWTRWK_					0	0	0			REV__NKPD1|p.H556Tfs*?|1|0.44|ENSG00000179846|chr19:45152105-45152105|G/-|frameshift_variant	REV__NKPD1|p.H556Tfs*?|1|0.44|ENSG00000179846|chr19:45152105-45152105|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.8695373535156	3	358.870037	1073.58828	0.12501	4.4862E-05	-1.3552	-0.00048633	-1.2302	-0.00044147	358.8694416586106	15.57	0.063269	15.57	15.512	15.575	0					6	2	3	0	0	0	0.60719	1	3404	3404		47.916	7.1374	1	132770	+		376	21290	187	189	379	379					0.054431107310165316
AASAAPIL	8	Unmodified	_AASAAPIL_					0	0	0		ENST00000597953.1_1_3:142719901-142720060:-|nuORF	ENST00000597953.1_1_3:142719901-142720060:-|nuORF	ENST00000597953.1_1_3:142719901-142720060:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.2146301269531	2	357.213246	712.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.296	1	35.296	34.796	35.796	0								0	0	0	1.7419	1	12566	12566		23.037	1.3344	1				377	11012	188	190	380	380					0.044230567772387985
AASAVVSAPVP	11	Unmodified	_AASAVVSAPVP_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	323.5184631347656	3	323.518559	967.533846	-0.7027	-0.00022734	0.53425	0.00017284	-0.16846	-5.4499E-05	323.51869982217926	15.71	0.090788	15.71	15.661	15.752	0					8	3	3	0	0	0	0.77007	1	3635	3635		18.531	0	1	712880			378	4045	189	191	381	381					0.04878054068956317
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.20556640625	2	432.205627	862.396701	0.17811	7.698E-05	-0.82431	-0.00035627	-0.6462	-0.00027929	432.2053822144811	17.076	0.16605	17.076	16.986	17.152	0					11	5	3	0	0	0	0.13267	1	3997	3997		71.877	36.259	1	493320			379	1478	190	192	382	382					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.20574951171875	2	432.205627	862.396701	0.74609	0.00032246	-0.7892	-0.0003411	-0.043111	-1.8633E-05	432.2052768511966	17.349	0.52568	17.349	17.262	17.788	0					17	13	2	0	0	0	0.0406	1	4888	4888		98.629	35.323	1	2088700			380	1478	190	192	383	383					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2056884765625	2	432.205627	862.396701	-0.79552	-0.00034383	0.70923	0.00030654	-0.086289	-3.7294E-05	432.20600036290136	17.112	0.12444	17.112	17.024	17.148	0					7	4	2	0	0	0	0.13267	1	4218	4218		71.877	31.305	1	285340			381	1478	190	192	384	384					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.25439453125	2	432.205627	862.396701	-0.47722	-0.00020626	0.063453	2.7425E-05	-0.41377	-0.00017883	432.2058343205552	17.326	0.24951	17.326	17.217	17.466	0					12	5	3	0	0	0	0.10915	2	5116	5116;5135		77.318	23.966	1	2304800			382	1478	190	192	385;386	385					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.2055358886719	2	432.205627	862.396701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.331	1	17.331	16.831	17.831	0								0	0	0	0.080575	1	5128	5128		77.318	27.293	1				383	1478	190	192	387	387					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.2055358886719	2	432.205627	862.396701	0.20454	8.8402E-05	-0.76714	-0.00033156	-0.56261	-0.00024316	432.2054477931815	17.118	0.17269	17.118	17.043	17.215	0					11	5	3	0	0	0	0.087861	1	4197	4197		82.241	38.124	1	220630			384	1478	190	192	388	388					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.205322265625	2	432.205627	862.396701	-0.4333	-0.00018728	-0.20637	-8.9193E-05	-0.63967	-0.00027647	432.20557177586556	17.131	0.16973	17.131	17.071	17.24	0					10	5	3	0	0	0	0.10915	1	4203	4203		77.318	32.787	1	526030			385	1478	190	192	389	389					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.20526123046875	2	432.205627	862.396701	-0.48115	-0.00020795	-0.66975	-0.00028947	-1.1509	-0.00049742	432.20549031875584	17.302	0.30576	17.302	17.192	17.498	0					15	6	4	0	0	0	0.10915	1	4975	4975		77.318	31.366	1	2827000			386	1478	190	192	390	390					-0.04000178082264938
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.2056579589844	2	432.205627	862.396701	0.91519	0.00039555	-1.5809	-0.00068326	-0.66569	-0.00028771	432.20483700794466	17.285	0.2033	17.285	17.226	17.43	0					7	4	2	0	0	0	0.10915	1	4968	4968		77.318	23.966	1	1970700			387	1478	190	192	391	391					-0.04000178082264938
AASEFILGK	9	Unmodified	_AASEFILGK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2633361816406	2	468.263468	934.512382	-0.51378	-0.00024058	-0.0034367	-1.6093E-06	-0.51722	-0.00024219	468.26342811785395	35.288	0.32177	35.288	35.179	35.501	0					13	6	3	0	0	0	0.12834	1	13600	13600		72.879	10.772	1	248660			388	4265	191	193	392	392					0.04250669040231969
AASGAETHL	9	Unmodified	_AASGAETHL_					0	0	0			REV__ENST00000570156.6_2_1:228461084-228461204:+|nuORF	REV__ENST00000570156.6_2_1:228461084-228461204:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.7109680175781	2	428.711599	855.408646	-0.93466	-0.0004007	0.52046	0.00022313	-0.4142	-0.00017757	428.7118982528851	17.645	0.2133	17.645	17.528	17.741	0					9	6	2	0	0	0	0.57706	1	4450	4450		24.203	5.8783	1	63974	+		389	20374	192	194	393	393					-0.024842380674272135
AASGLALAA	9	Unmodified	_AASGLALAA_					0	0	0			REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF	REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.7175598144531	2	372.716153	743.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.252	1	36.252	35.752	36.752	0								0	0	0	0.39312	1	12971	12971		12.959	3.4886	1		+		390	16057	193	195	394	394					0.03578155288892049
AASILGKPA	9	Unmodified	_AASILGKPA_					0	0	0		nc|ENSG00000099977|P30046-2|DDT;ENSG00000099977|ENST00000398344|DDT;ENST00000444947.2_1_22:24315904-24316657:-|nuORF;ENSG00000099974|ENST00000215770|DDTL	nc|ENSG00000099977|P30046-2|DDT	nc|ENSG00000099977|P30046-2|DDT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.2530517578125	2	414.252903	826.491253	0.53492	0.00022159	-0.37876	-0.0001569	0.15616	6.4691E-05	414.2527077196583	23.998	0.23059	23.998	23.887	24.118	0					9	5	2	0	0	0	0.54267	1	8005	8005		27.882	1.1893	1	135810			391	1955	194	196	395	395					0.07106703731369635
AASILGKPA	9	Unmodified	_AASILGKPA_					0	0	0		nc|ENSG00000099977|P30046-2|DDT;ENSG00000099977|ENST00000398344|DDT;ENST00000444947.2_1_22:24315904-24316657:-|nuORF;ENSG00000099974|ENST00000215770|DDTL	nc|ENSG00000099977|P30046-2|DDT	nc|ENSG00000099977|P30046-2|DDT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2527160644531	2	414.252903	826.491253	0.062845	2.6034E-05	-0.4168	-0.00017266	-0.35395	-0.00014662	414.25268998889123	23.971	0.36759	23.971	23.762	24.13	0					14	7	3	0	0	0	0.30951	1	8296	8296		49.442	5.3247	1	503130			392	1955	194	196	396	396					0.07106703731369635
AASPAAAPQ	9	Unmodified	_AASPAAAPQ_					0	0	0		KRTAP5-5|p.G94Afs*157|1|0.4|ENSG00000185940|chr11:1630117-1630117|G/-|frameshift_variant	KRTAP5-5|p.G94Afs*157|1|0.4|ENSG00000185940|chr11:1630117-1630117|G/-|frameshift_variant	KRTAP5-5|p.G94Afs*157|1|0.4|ENSG00000185940|chr11:1630117-1630117|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.2034606933594	2	392.20341	782.392267	-0.67374	-0.00026424	0.88542	0.00034727	0.21168	8.3023E-05	392.20372789230925	14.112	0.21034	14.112	13.961	14.171	0					6	4	2	0	0	0	0.26904	1	3450	3450		53.351	5.4358	1	73569			393	11268	195	197	397	397					-0.007633192335333661
AASPAHPAK	9	Unmodified	_AASPAHPAK_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.2324523925781	2	425.232502	848.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.339	1	12.339	11.839	12.839	0								0	0	0	0.2591	1	2601	2601		42.396	13.247	1				394	6963	196	198	398	398					0.020163624117572
AASSEHFEK	9	Unmodified	_AASSEHFEK_					0	0	0		ENSG00000100568|ENST00000554659|VTI1B	ENSG00000100568|ENST00000554659|VTI1B	ENSG00000100568|ENST00000554659|VTI1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.23541259765625	2	503.235439	1004.45632	-0.064647	-3.2533E-05	-0.17507	-8.81E-05	-0.23971	-0.00012063	503.23546556365517	15.894	0.17701	15.894	15.802	15.979	0					9	4	3	0	0	0	0.047855	1	4204	4204		96.034	48.074	1	786980			395	2042	197	199	399	399					-0.045725838672410646
AASSIPLTLI	10	Unmodified	_AASSIPLTLI_					0	0	0			REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1	REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.2012939453125	3	329.202459	984.585547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.056	1	28.056	27.556	28.556	0								0	0	0	0.4201	1	8719	8719		7.8045	1.8834	1		+		396	21805	198	200	400	400					0.09263797762855575
AASSSKIES	9	Unmodified	_AASSSKIES_					0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.22430419921875	2	440.224539	878.434526	-1.0408	-0.00045819	0.3256	0.00014334	-0.71522	-0.00031486	440.22460941502015	15.376	0.14723	15.376	15.312	15.459	0					8	5	2	0	0	0	0.35021	1	3488	3488		45.972	0	1	189620	+		397	13874	199	201	401	401					-0.009553886157959823
AASSSSHL	8	Unmodified	_AASSSSHL_					0	0	0		C1QA|p.D220Tfs*62|1|0.17|ENSG00000173372|chr1:22639322-22639322|A/-|frameshift_variant;C1QA|p.L91Sfs*191|1|0.52|ENSG00000173372|chr1:22638936-22638936|C/-|frameshift_variant	C1QA|p.D220Tfs*62|1|0.17|ENSG00000173372|chr1:22639322-22639322|A/-|frameshift_variant	C1QA|p.D220Tfs*62|1|0.17|ENSG00000173372|chr1:22639322-22639322|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	380.18475341796875	2	380.185217	758.355882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.745	1	15.745	15.245	16.245	0								0	0	0	1.7419	1	3478	3478		28.254	5.2118	1				398	333	200	202	402	402					-0.0329619613023624
AASSSSLEK	9	Unmodified	_AASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.22503662109375	2	440.224539	878.434526	0.56041	0.00024671	-0.59884	-0.00026362	-0.038421	-1.6914E-05	440.2243083987147	15.661	0.25365	15.661	15.571	15.824	0					18	6	4	0	0	0	0.02953	1	4083	4083		109.48	38.662	1	2608800			399	1545;6995;2493;7397	201	203	403	403					-0.00955388615807351
AASSSSLEK	9	Unmodified	_AASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.2271728515625	2	440.224539	878.434526	3.1449	0.0013844	-1.8775	-0.00082651	1.2674	0.00055793	440.22356570571554	15.376	0.091575	15.376	15.321	15.412	0					6	3	2	0	0	0	0.15163	1	3493	3493		67.494	7.3754	1	65896			400	1545;6995;2493;7397	201	203	404	404					-0.00955388615807351
AASSSSLEK	9	Unmodified	_AASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.22540283203125	2	440.224539	878.434526	-0.33806	-0.00014882	1.2868	0.00056647	0.94872	0.00041765	440.22514993836813	15.594	0.21812	15.594	15.534	15.752	0					12	4	4	0	0	0	0.013878	1	4303	4303		132.76	31.505	1	474590			401	1545;6995;2493;7397	201	203	405	405					-0.00955388615807351
AASSSSLEK	9	Unmodified	_AASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.22528076171875	2	440.224539	878.434526	0.34943	0.00015383	2.1916	0.00096481	2.5411	0.0011186	440.22556844589855	15.393	0.11344	15.393	15.316	15.429	0					5	3	2	0	0	0	0.21263	1	3451	3451		60.118	7.1816	1	127400			402	1545;6995;2493;7397	201	203	406	406					-0.00955388615807351
AASSSSLEK	9	Unmodified	_AASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.22442626953125	2	440.224539	878.434526	-0.56926	-0.0002506	-0.017848	-7.8572E-06	-0.5871	-0.00025846	440.22455931195714	15.379	0.11182	15.379	15.341	15.453	0					8	3	3	0	0	0	0.28897	1	3445	3445		51.193	3.5354	1	160600			403	1545;6995;2493;7397	201	203	407	407					-0.00955388615807351
AASSSSLEK	9	Unmodified	_AASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.2243957519531	2	440.224539	878.434526	-0.55083	-0.00024249	0.31198	0.00013734	-0.23884	-0.00010514	440.22465653237856	15.605	0.26897	15.605	15.546	15.815	0					13	5	3	0	0	0	0.015496	1	4161	4161		129.42	33.388	1	2031300			404	1545;6995;2493;7397	201	203	408	408					-0.00955388615807351
AASSSSLEK	9	Unmodified	_AASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.2245788574219	2	440.224539	878.434526	0.70361	0.00030975	-1.0455	-0.00046026	-0.3419	-0.00015051	440.22419438498486	15.601	0.21824	15.601	15.529	15.747	0					11	4	4	0	0	0	0.026538	1	4152	4152		112.41	32.698	1	1542200			405	1545;6995;2493;7397	201	203	409	409					-0.00955388615807351
AASSVPNLK	9	Unmodified	_AASSVPNLK_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.S595Vfs*62|1|0.12|ENSG00000130479|chr19:17727160-17727160|C/-|frameshift_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;MAP1S|p.T554M|1|0.4|ENSG00000130479|chr19:17727045-17727045|C/T|missense_variant	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7529602050781	2	443.753267	885.491981	-0.23481	-0.0001042	-1.0092	-0.00044783	-1.244	-0.00055203	443.7530401702393	23.771	0.11831	23.771	23.711	23.83	0					4	2	2	0	0	0	0.33044	1	8245	8245		47.657	6.2307	1	137450			406	3645	202	204	410	410					0.044654983804207404
AASTTTVATG	10	Unmodified	_AASTTTVATG_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.2254638671875	2	440.224539	878.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.328	1	15.328	14.828	15.828	0								0	0	0	0.38322	1	3319	3319		35.618	0	1		+		407	12820	203	205	411	411					-0.009553886157959823
AASTVFIRK	9	Unmodified	_AASTVFIRK_					0	0	0		ENST00000306910.8_1_19:58929128-58929233:+|nuORF	ENST00000306910.8_1_19:58929128-58929233:+|nuORF	ENST00000306910.8_1_19:58929128-58929233:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7981262207031	2	496.798009	991.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.076	1	22.076	21.576	22.576	0								0	0	0	0.23445	1	6442	6442		45.972	5.1941	1				408	8525	204	206	412	412					0.08533753059816718
AASTVFIRK	9	Unmodified	_AASTVFIRK_					0	0	0		ENST00000306910.8_1_19:58929128-58929233:+|nuORF	ENST00000306910.8_1_19:58929128-58929233:+|nuORF	ENST00000306910.8_1_19:58929128-58929233:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7977600097656	2	496.798009	991.581465	-0.75772	-0.00037644	0.42566	0.00021147	-0.33206	-0.00016497	496.79826903533035	22.289	0.16244	22.289	22.187	22.35	0					7	3	3	0	0	0	0.39215	1	7539	7539		42.396	5.237	1	378300			409	8525	204	206	413	413					0.08533753059816718
AASYSKNVVR	10	Unmodified	_AASYSKNVVR_					0	0	0		ENST00000580296.5_3_17:80417304-80422202:+|nuORF	ENST00000580296.5_3_17:80417304-80422202:+|nuORF	ENST00000580296.5_3_17:80417304-80422202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.800048828125	2	547.80128	1093.58801	-1.5063	-0.00082517	-1.0162	-0.00055668	-2.5225	-0.0013818	547.8008389998497	43.446	0.30607	43.446	43.345	43.651	0					49	18	4	0	0	0	0.58189	1	15040	15040		36.447	0.82846	1	896840			410	10868	205	207	414	414					0.044956462205163916
AATCCSLPG	9	2 Carbamidomethyl (C)	_AATC(Carbamidomethyl (C))C(Carbamidomethyl (C))SLPG_	AATC(1)C(1)SLPG		AATC(48)C(48)SLPG		0	2	0		ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-15|DMPK;nc|ENSG00000104936|Q09013-16|DMPK	ENST00000596686.5_1_19:46273741-46282867:-|nuORF	ENST00000596686.5_1_19:46273741-46282867:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.69903564453125	2	468.69932	935.384087	0.27628	0.00012949	-1.2969	-0.00060786	-1.0206	-0.00047836	468.6989174544181	23.827	0.40783	23.827	23.565	23.973	0					21	9	3	0	0	0	0.32741	1	7961	7961		47.916	10.756	1	354200			411	11005	206	208	415	415	443;444				-0.08618957536816652
AATDLIHNAV	10	Unmodified	_AATDLIHNAV_					0	0	0			REV__ENSG00000153294|ENST00000283303|ADGRF4	REV__ENSG00000153294|ENST00000283303|ADGRF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.185546875	3	342.185579	1023.53491	0.50827	0.00017392	-0.74206	-0.00025392	-0.23379	-7.9999E-05	342.18530251129323	12.409	0.51148	12.409	12.175	12.686	0					47	17	4	0	0	0	0.4758	1	2551	2551		47.96	11.513	1	913760	+		412	15538	207	209	416	416					0.024082684378413433
AATEGELPTH	10	Unmodified	_AATEGELPTH_					0	0	0		ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.24609375	2	513.248546	1024.48254	-0.46816	-0.00024028	-3.3979	-0.001744	-3.8661	-0.0019842	513.2468803561017	11.078	0.26712	11.078	10.96	11.228	0					19	9	3	0	0	0	0.58896	1	2173	2173		35.618	4.0885	1	184100			413	10327	208	210	417	417					-0.02872314695764544
AATGHTVVL	9	Unmodified	_AATGHTVVL_					0	0	0		ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH	ENSG00000138796|ENST00000309522|HADH	ENSG00000138796|ENST00000309522|HADH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.74774169921875	2	434.747985	867.481417	-0.26915	-0.00011701	-0.53001	-0.00023042	-0.79917	-0.00034744	434.7477918118126	26.62	0.13815	26.62	26.548	26.687	0					8	4	2	0	0	0	0.43426	1	8104	8104		38.806	3.1879	1	161540			414	4293	209	211	418	418					0.0423751572599258
AATGSEILLW	10	Unmodified	_AATGSEILLW_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1;SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;nc|ENSG00000160410|Q8TBC3-2|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.7871704101562	2	530.787307	1059.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.752	1	36.752	36.252	37.252	0								0	0	0	0.40446	1	12046	12046		29.15	2.4566	1				415	5363	210	212	419	419					0.03266323240427482
AATKKPAPEK	10	Unmodified	_AATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.8091430664062	2	520.808574	1039.60259	1.4575	0.00075907	-0.46936	-0.00024445	0.98813	0.00051462	520.8082562524582	11.543	0.11827	11.543	11.469	11.587	0					8	4	2	0	0	0	0.11826	1	2246	2246		92.239	12.526	1	80686			416	6489	211	213	420	420					0.08437718368645619
AATKKPAPEK	10	Unmodified	_AATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.8088989257812	2	520.808574	1039.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.647	1	11.647	11.147	12.147	0								0	0	0	0.28607	1	2437	2437		53.089	13.836	1				417	6489	211	213	421	421					0.08437718368645619
AATKKPAPEK	10	Unmodified	_AATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.8085327148438	2	520.808574	1039.60259	0.35868	0.0001868	0.8006	0.00041696	1.1593	0.00060376	520.8087802508464	11.549	0.114	11.549	11.487	11.601	0					9	4	3	0	0	0	0.31894	1	2258	2258		65.157	3.0498	1	66708			418	6489	211	213	422	422					0.08437718368645619
AATKKPAPEK	10	Unmodified	_AATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.80859375	2	520.808574	1039.60259	1.6232	0.00084538	-0.29698	-0.00015467	1.3262	0.00069071	520.8081224408133	11.576	0.12484	11.576	11.498	11.623	0					6	4	2	0	0	0	0.080628	1	2268	2268		99.013	8.2363	1	174650			419	6489	211	213	423	423					0.08437718368645619
AATKKVVQQL	10	Unmodified	_AATKKVVQQL_					0	0	0		nc|ENSG00000133136|A0A804HLA8|GNG5B	nc|ENSG00000133136|A0A804HLA8|GNG5B	nc|ENSG00000133136|A0A804HLA8|GNG5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.3380126953125	2	543.337498	1084.66044	1.8808	0.0010219	-1.1109	-0.00060358	0.7699	0.00041832	543.3366739442154	13.267	0.087458	13.267	13.227	13.314	0					4	2	2	0	0	0	0.61187	1	2993	2993		32.812	1.2826	1	218710			420	11529	212	214	424	424					0.12149980294088891
AATRIMLLP	9	Unmodified	_AATRIMLLP_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4;nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.20172119140625	3	329.200284	984.579022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.133	1	25.133	24.633	25.633	0								0	0	0	0.35737	1	7523	7523		23.523	1.5628	1				421	1851	213	215	425	425					0.08611581330478657
AATSGEHLVAG	11	Unmodified	_AATSGEHLVAG_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7588195800781	2	506.756538	1011.49852	2.9388	0.0014892	0.91288	0.00046261	3.8516	0.0019518	506.75698541392455	36.207	0.86655	36.207	36.047	36.914	0					32	17	4	0	0	0	0.31478	1	14034	14034		60.972	2.19	1	5329600			422	1232	214	216	426	426					-0.006766084588434751
AATSVQMIPLL	11	Unmodified	_AATSVQMIPLL_					0	0	0			REV__ENST00000498676.1_17:34625520-34625688:-|nuORF	REV__ENST00000498676.1_17:34625520-34625688:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.3262329101562	2	572.325742	1142.63693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.941	1	52.941	52.441	53.441	0								0	0	0	0.3769	1	20474	20474		41.427	2.6205	1		+		423	19798	215	217	427	427					0.07131798465275097
AATTELHHH	9	Unmodified	_AATTELHHH_					0	0	0			REV__AMOT|p.Q392Lfs*49|1|0.09|ENSG00000126016|chrX:112815575-112815576|-/TCCA|frameshift_variant	REV__AMOT|p.Q392Lfs*49|1|0.09|ENSG00000126016|chrX:112815575-112815576|-/TCCA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7476806640625	2	508.749047	1015.48354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.727	1	38.727	38.227	39.227	0								0	0	0	0.22106	1	15206	15206		47.916	0.25827	1		+		424	12152	216	218	428	428					-0.0235805553619457
AATVVDKCI	9	Unmodified	_AATVVDKCI_					0	0	0			REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant	REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2496032714844	2	460.249503	918.484453	-0.43668	-0.00020098	1.0337	0.00047576	0.59702	0.00027478	460.2500500511343	25.331	0.23583	25.331	25.214	25.449	0					23	8	4	0	0	0	0.12239	1	7587	7587		74.255	2.9593	1	715510	+		425	17354	217	219	429	429					0.021950227884985907
AAVAAQALVL	10	Unmodified	_AAVAAQALVL_					0	0	0		ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7864990234375	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.267	1	35.267	34.767	35.767	0								0	0	0	0.20728	1	13601	13601		63.306	2.3343	1				426	6858	218	220	430	430					0.09390948311227021
AAVAGARDTY	10	Unmodified	_AAVAGARDTY_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;ENST00000477642.5_1_2:38525261-38527422:-|nuORF	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7519226074219	2	497.751256	993.487959	0.18719	9.3174E-05	0.033585	1.6717E-05	0.22078	0.00010989	497.7511459175884	22.13	0.11122	22.13	22.062	22.173	0					5	3	2	0	0	0	0.28723	1	6207	6207		68.787	10.005	1	92747			427	3141	219	221	431	431					-0.009045911132830042
AAVDAGMAM	9	2 Oxidation (M)	_AAVDAGM(Oxidation (M))AM(Oxidation (M))_		AAVDAGM(1)AM(1)		AAVDAGM(66)AM(66)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.6807556152344	2	434.680596	867.346639	0.10254	4.457E-05	-0.51283	-0.00022292	-0.41029	-0.00017835	434.6803512926877	19.946	0.52681	19.946	19.795	20.322	0					12	11	2	0	0	0	0.16524	1	6185	6185		65.803	25.025	1	64923			428	1048	220	222	432	432		48;49			-0.09234048802431971
AAVDAGMAM	9	2 Oxidation (M)	_AAVDAGM(Oxidation (M))AM(Oxidation (M))_		AAVDAGM(1)AM(1)		AAVDAGM(66)AM(66)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7296142578125	2	434.680596	867.346639	-0.44374	-0.00019288	-0.46274	-0.00020115	-0.90648	-0.00039403	434.6804660662644	19.885	0.42	19.885	19.625	20.045	0					13	8	2	0	0	0	0.16524	1	6324	6324		65.803	19.851	1	100420			429	1048	220	222	433	433		48;49			-0.09234048802431971
AAVDAGMAM	9	Oxidation (M)	_AAVDAGM(Oxidation (M))AM_		AAVDAGM(1)AM		AAVDAGM(45)AM(-45)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.68328857421875	2	426.683139	851.351724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.525	1	27.525	27.025	28.025	0								0	0	0	0.082189	1	8778	8778		76.847	36.274	2				430	1048	220	223	434	434		48;49			-0.07989744939811771
AAVDAGMAM	9	Oxidation (M)	_AAVDAGM(Oxidation (M))AM_		AAVDAGM(1)AM		AAVDAGM(45)AM(-45)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.6829528808594	2	426.683139	851.351724	-0.45316	-0.00019335	-0.56328	-0.00024034	-1.0164	-0.0004337	426.6831397157632	27.847	0.44713	27.847	27.665	28.112	0					22	9	3	0	0	0	0.11118	1	10089	10089		76.847	19.035	2	292240			431	1048	220	223	435	435		48;49			-0.07989744939811771
AAVDAGMAM	9	Oxidation (M)	_AAVDAGM(Oxidation (M))AM_		AAVDAGM(1)AM		AAVDAGM(50)AM(-50)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.68328857421875	2	426.683139	851.351724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.699	1	27.699	27.199	28.199	0								0	0	0	0.03718	1	9096	9096		92.191	28.884	2				432	1048	220	223	436	436		48;49			-0.07989744939811771
AAVDAGMAM	9	Oxidation (M)	_AAVDAGM(Oxidation (M))AM_		AAVDAGM(1)AM		AAVDAGM(48)AM(-48)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.68304443359375	2	426.683139	851.351724	-0.39859	-0.00017007	-0.45182	-0.00019278	-0.85041	-0.00036285	426.68319821379856	27.821	0.41498	27.821	27.611	28.026	0					14	8	3	0	0	0	0.068692	1	10015	10015		88.643	42.691	2	392000			433	1048	220	223	437	437		48;49			-0.07989744939811771
AAVEKGVETK	10	Unmodified	_AAVEKGVETK_					0	0	0			REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF	REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2900390625	2	516.290214	1030.56587	1.3365	0.00069004	-2.6844	-0.0013859	-1.3479	-0.00069589	516.2894518140615	26.416	0.21018	26.416	26.328	26.538	0					19	7	4	0	0	0	0.52275	1	8023	8023		42.864	2.8061	1	195180	+		434	12188	221	224	438	438					0.051814217520814054
AAVESFVTK	9	Unmodified	_AAVESFVTK_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2608337402344	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.365	1	29.365	28.865	29.865	0								0	0	0	0.3693	1	10479	10479		19.997	1.6724	1				435	3814	222	225	439	439					0.03006365177623138
AAVGIMNI	8	Unmodified	_AAVGIMNI_					0	0	0		ENST00000262056.13_1_12:53435504-53435621:+|nuORF	ENST00000262056.13_1_12:53435504-53435621:+|nuORF	ENST00000262056.13_1_12:53435504-53435621:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.20697021484375	2	394.720381	787.42621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.953	1	17.953	17.453	18.453	0								0	0	0	1.7419	1	5278	5278		35.201	3.6218	1				436	8303	223	226	440	440					0.02399385933870235
AAVGKSSFL	9	Unmodified	_AAVGKSSFL_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.2496643066406	2	440.25036	878.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.504	1	31.504	31.004	32.004	0								0	0	0	0.17378	1	10130	10130		54.776	19.158	1				437	5758	224	227	441	441					0.04206399868758126
AAVGKSSFL	9	Unmodified	_AAVGKSSFL_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.2503356933594	2	440.25036	878.486168	0.56003	0.00024655	-0.59515	-0.00026202	-0.035125	-1.5464E-05	440.2499637847792	31.785	0.2537	31.785	31.696	31.949	0					14	6	3	0	0	0	0.28897	1	11600	11600		51.193	8.7966	1	337020			438	5758	224	227	442	442					0.04206399868758126
AAVGKSSFL	9	Unmodified	_AAVGKSSFL_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2498779296875	2	440.25036	878.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.581	1	31.581	31.081	32.081	0								0	0	0	0.14033	1	10891	10891		62.107	14.45	1				439	5758	224	227	443	443					0.04206399868758126
AAVGKSSFL	9	Unmodified	_AAVGKSSFL_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.24993896484375	2	440.25036	878.486168	-0.54921	-0.00024179	0.41854	0.00018426	-0.13067	-5.7526E-05	440.2503657583231	31.738	0.26781	31.738	31.617	31.885	0					11	5	3	0	0	0	0.15163	1	11903	11903		67.494	5.3863	1	185960			440	5758	224	227	444	444					0.04206399868758126
AAVGLSGP	8	Unmodified	_AAVGLSGP_					0	0	0			REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|109|2|anti-sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|109|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.19134521484375	2	336.189771	670.36499	3.5375	0.0011893	0.89671	0.00030147	4.4342	0.0014907	336.19000479985414	31.117	0.24484	31.117	31.025	31.27	0					15	9	2	0	0	0	0.72892	1	9967	9967		29.842	6.8048	1	181830	+		441	20737	225	228	445	445					0.016621972260963958
AAVGVVAGGLL	11	Unmodified	_AAVGVVAGGLL_					0	0	0		ENSG00000182685|ENST00000328540|BRICD5;nc|ENSG00000182685|Q6PL45|BRICD5	ENSG00000182685|ENST00000328540|BRICD5	ENSG00000182685|ENST00000328540|BRICD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7868347167969	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.067	1	35.067	34.567	35.567	0								0	0	0	0.42301	1	12463	12463		31.955	1.4512	1				442	6913	226	229	446	446					0.09390948311249758
AAVGYIMEK	9	Unmodified	_AAVGYIMEK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2567443847656	2	491.257328	980.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.685	1	30.685	30.185	31.185	0								0	0	0	0.13425	1	9799	9799		63.534	27.916	1				443	2664	227	230	447	447					0.009073093055462778
AAVGYIMEK	9	Unmodified	_AAVGYIMEK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2571105957031	2	491.257328	980.500103	-0.52742	-0.0002591	-4.2054	-0.0020659	-4.7328	-0.002325	491.2577334848544	30.991	2.3983	30.991	30.311	32.709	0					116	58	3	0	0	0	0.035062	2	11223	11207;11223		104.06	43.085	1	1162900			444	2664	227	230	448;449	449					0.009073093055462778
AAVGYIMEK	9	Unmodified	_AAVGYIMEK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2569274902344	2	491.257328	980.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.756	1	30.756	30.256	31.256	0								0	0	0	0.099216	1	10131	10131		71.877	31.099	1				445	2664	227	230	450	450					0.009073093055462778
AAVGYIMEK	9	Unmodified	_AAVGYIMEK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2572021484375	2	491.257328	980.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.005	1	31.005	30.505	31.505	0								0	0	0	0.015064	1	11650	11650		104.06	32.761	1				446	2664	227	230	451	451					0.009073093055462778
AAVGYIMEK	9	Unmodified	_AAVGYIMEK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.25732421875	2	491.257328	980.500103	-0.72992	-0.00035858	-0.89594	-0.00044014	-1.6259	-0.00079871	491.2577168606411	30.974	0.2369	30.974	30.841	31.077	0					9	5	2	0	0	0	0.27249	1	11646	11646		52.937	17.736	1	221350			447	2664	227	230	452	452					0.009073093055462778
AAVGYIMEK	9	Unmodified	_AAVGYIMEK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2569885253906	2	491.257328	980.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.772	1	30.772	30.272	31.272	0								0	0	0	0.14033	1	10518	10518		62.107	16.155	1				448	2664	227	230	453	453					0.009073093055462778
AAVHTPVL	8	Unmodified	_AAVHTPVL_					0	0	0		ENST00000565010.1_1_16:602435-603513:+|nuORF	ENST00000565010.1_1_16:602435-603513:+|nuORF	ENST00000565010.1_1_16:602435-603513:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	404.2394714355469	2	404.239796	806.465038	-2.2703	-0.00091775	2.313	0.00093499	0.042649	1.724E-05	404.24062694831053	31.335	0.13091	31.335	31.257	31.388	0					7	3	3	0	0	0	0.59916	1	10768	10768		49.211	0	1	177480			449	10743	228	231	454	454					0.05406434559904483
AAVKAFLAQ	9	Unmodified	_AAVKAFLAQ_					0	0	0			REV__ENSG00000182568|ENST00000338745|SATB1;REV__nc|ENSG00000119042|Q9UPW6-2|SATB2	REV__ENSG00000182568|ENST00000338745|SATB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.76849365234375	2	459.774003	917.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.605	1	19.605	19.105	20.105	0								0	0	0	0.12457	1	5356	5356		65.803	0	1		+		450	16889;14233	229	232	455	455					0.0713867913973445
AAVLRSAAL	9	Unmodified	_AAVLRSAAL_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.2712707519531	2	436.271627	870.528701	0.23142	0.00010096	-0.58674	-0.00025598	-0.35532	-0.00015501	436.27132343192164	29.818	0.22234	29.818	29.714	29.937	0					23	9	3	0	0	0	0.07136	1	9426	9426		87.696	21.267	1	413970			451	6026	230	233	456	456					0.0882579499698295
AAVLRSAAL	9	Unmodified	_AAVLRSAAL_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.27197265625	2	436.271627	870.528701	0.64808	0.00028274	-0.96883	-0.00042267	-0.32075	-0.00013993	436.27119847856903	30.13	0.48697	30.13	30.011	30.498	0					29	12	4	0	0	0	0.10915	1	10808	10808		77.318	10.888	1	3291900			452	6026	230	233	457	457					0.0882579499698295
AAVLRSAAL	9	Unmodified	_AAVLRSAAL_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.2713623046875	2	436.271627	870.528701	-0.88764	-0.00038725	0.52427	0.00022872	-0.36337	-0.00015853	436.2718707521971	29.855	0.27201	29.855	29.752	30.024	0					25	10	3	0	0	0	0.19605	1	9735	9735		62.107	14.45	1	679800			453	6026	230	233	458	458					0.0882579499698295
AAVLRSAAL	9	Unmodified	_AAVLRSAAL_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.2714538574219	2	436.271627	870.528701	-0.65338	-0.00028505	0.079786	3.4808E-05	-0.57359	-0.00025024	436.2716640632828	29.868	0.26673	29.868	29.765	30.031	0					17	7	3	0	0	0	0.18416	1	10086	10086		63.534	12.341	1	625000			454	6026	230	233	459	459					0.0882579499698295
AAVLRSAAL	9	Unmodified	_AAVLRSAAL_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.27178955078125	2	436.271627	870.528701	0.75666	0.00033011	-0.85839	-0.00037449	-0.10173	-4.4382E-05	436.2713033957208	30.039	0.46264	30.039	29.93	30.393	0					21	9	4	0	0	0	0.056004	1	11062	11062		93.143	34.361	1	4822100			455	6026	230	233	460	460					0.0882579499698295
AAVMGAEAAL	10	Oxidation (M)	_AAVM(Oxidation (M))GAEAAL_		AAVM(1)GAEAAL		AAVM(82)GAEAAL	0	0	1			REV__ENSG00000128482|ENST00000461366|RNF112	REV__ENSG00000128482|ENST00000461366|RNF112	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.23114013671875	2	460.23131	918.448068	-0.15342	-7.0608E-05	-0.27057	-0.00012453	-0.42399	-0.00019513	460.2312366134174	17.76	0.26979	17.76	17.6	17.87	0					10	5	3	0	0	0	0.17679	1	5344	5344		82.305	28.954	1	195050	+		456	14513	231	234	461	461		550			-0.014418541082136471
AAVNHISQL	9	Unmodified	_AAVNHISQL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000495001.1_1_10:103607287-103649300:-|nuORF;nc|ENSG00000120029|Q5T2E6-2|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7639465332031	2	476.764166	951.513779	-2.7866	-0.0013285	0.45244	0.00021571	-2.3341	-0.0011128	476.7642232185457	28.608	0.24316	28.608	28.467	28.71	0					13	6	3	0	0	0	0.19952	1	9499	9499		61.691	6.1871	1	224050			457	3155	232	235	462	462					0.036083031289877
AAVPKSLQL	9	Unmodified	_AAVPKSLQL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;AP1G2|p.L755Cfs*3|1|0.18|ENSG00000213983|chr14:23559844-23559844|G/-|frameshift_variant;ENSG00000213983|ENST00000397120|AP1G2;ENST00000557391.1_1_14:24028960-24029655:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7873229980469	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.004	1	35.004	34.504	35.504	0								0	0	0	0.14881	1	11466	11466		60.118	6.7668	1				458	173	233	236	463	463					0.09390948311227021
AAVPKSLQL	9	Unmodified	_AAVPKSLQL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;AP1G2|p.L755Cfs*3|1|0.18|ENSG00000213983|chr14:23559844-23559844|G/-|frameshift_variant;ENSG00000213983|ENST00000397120|AP1G2;ENST00000557391.1_1_14:24028960-24029655:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7867431640625	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.242	1	35.242	34.742	35.742	0								0	0	0	0.091069	1	13588	13588		74.255	5.4682	1				459	173	233	236	464	464					0.09390948311227021
AAVPRAAFL	9	Unmodified	_AAVPRAAFL_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.27386474609375	2	458.27417	914.533787	-0.97807	-0.00044822	0.80118	0.00036716	-0.17688	-8.1061E-05	458.27445809093865	37.91	0.18239	37.91	37.81	37.992	0					21	10	3	0	0	0	0.41354	1	12787	12787		40.573	3.5441	1	97975			460	1811	234	237	465	465					0.07310098859602476
AAVPRAAFL	9	Unmodified	_AAVPRAAFL_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.27398681640625	2	458.27417	914.533787	0.72206	0.0003309	-0.90394	-0.00041425	-0.18188	-8.335E-05	458.2737578037256	38.143	0.32696	38.143	38.012	38.339	0					29	11	3	0	0	0	0.23186	1	14928	14928		57.811	11.045	1	694970			461	1811	234	237	466	466					0.07310098859602476
AAVPRAAFL	9	Unmodified	_AAVPRAAFL_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2740173339844	2	458.27417	914.533787	0.12744	5.8403E-05	-0.43131	-0.00019766	-0.30386	-0.00013925	458.27386279645043	37.88	0.21721	37.88	37.781	37.998	0					16	10	2	0	0	0	0.43426	1	13551	13551		38.806	17.104	1	107870			462	1811	234	237	467	467					0.07310098859602476
AAVPRAAFL	9	Unmodified	_AAVPRAAFL_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2743835449219	2	458.27417	914.533787	-2.6452	-0.0012122	3.1222	0.0014308	0.47703	0.00021861	458.27565363711	37.875	0.15888	37.875	37.817	37.976	0					10	7	2	0	0	0	0.41354	1	13556	13556		40.573	10.731	1	98188			463	1811	234	237	468	468					0.07310098859602476
AAVPRAAFL	9	Unmodified	_AAVPRAAFL_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.27392578125	2	458.27417	914.533787	0.87964	0.00040312	-0.96469	-0.00044209	-0.08505	-3.8976E-05	458.2736724816254	38.031	0.3345	38.031	37.932	38.267	0					20	7	3	0	0	0	0.32741	1	14908	14908		47.916	3.3845	1	1137500			464	1811	234	237	469	469					0.07310098859602476
AAVPRAAFL	9	Unmodified	_AAVPRAAFL_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.27423095703125	2	458.27417	914.533787	2.5046	0.0011478	-2.3132	-0.0010601	0.19139	8.7711E-05	458.2731866547018	38.064	0.33044	38.064	37.92	38.251	0					16	7	3	0	0	0	0.16524	1	14924	14924		65.803	15.779	1	673730			465	1811	234	237	470	470					0.07310098859602476
AAVSRVQAGP	10	Unmodified	_AAVSRVQAGP_					0	0	0		ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.27154541015625	2	478.269616	954.524678	-0.2695	-0.00012889	-1.0716	-0.00051253	-1.3411	-0.00064143	478.26912554851225	13.026	0.91368	13.026	12.711	13.624	0					57	25	6	0	0	0	0.46215	1	2814	2814		49.442	3.4693	1	4094900			466	7070	235	238	471	471					0.045597055032772005
AAVSTHVAL	9	Unmodified	_AAVSTHVAL_					0	0	0		IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant;IHH|p.E379Rfs*18|2|0.25|ENSG00000163501|chr2:219055308-219055308|C/-|frameshift_variant;ENSG00000163501|ENST00000295731|IHH	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7481689453125	2	434.747985	867.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.413	1	29.413	28.913	29.913	0								0	0	0	0.16876	1	9279	9279		55.504	7.5886	1				467	5565	236	239	472	472					0.0423751572599258
AAVSTHVAL	9	Unmodified	_AAVSTHVAL_					0	0	0		IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant;IHH|p.E379Rfs*18|2|0.25|ENSG00000163501|chr2:219055308-219055308|C/-|frameshift_variant;ENSG00000163501|ENST00000295731|IHH	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7479248046875	2	434.747985	867.481417	0.68352	0.00029716	-1.3706	-0.00059585	-0.68705	-0.00029869	434.74742443594636	29.708	0.2533	29.708	29.614	29.867	0					15	6	4	0	0	0	0.05357	1	10647	10647		94.006	43.982	1	376740			468	5565	236	239	473	473					0.0423751572599258
AAVSTHVAL	9	Unmodified	_AAVSTHVAL_					0	0	0		IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant;IHH|p.E379Rfs*18|2|0.25|ENSG00000163501|chr2:219055308-219055308|C/-|frameshift_variant;ENSG00000163501|ENST00000295731|IHH	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.7479248046875	2	434.747985	867.481417	-0.82969	-0.00036071	0.25429	0.00011055	-0.5754	-0.00025015	434.7481157697449	29.459	0.13972	29.459	29.377	29.516	0					14	5	3	0	0	0	0.25109	1	9579	9579		55.504	16.698	1	193180			469	5565	236	239	474	474					0.0423751572599258
AAVSTHVAL	9	Unmodified	_AAVSTHVAL_					0	0	0		IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant;IHH|p.E379Rfs*18|2|0.25|ENSG00000163501|chr2:219055308-219055308|C/-|frameshift_variant;ENSG00000163501|ENST00000295731|IHH	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7477722167969	2	434.747985	867.481417	0.85167	0.00037026	-1.9462	-0.00084611	-1.0945	-0.00047585	434.7474046132449	29.708	0.49658	29.708	29.321	29.818	0					19	10	4	0	0	0	0.05357	1	11018	11018		94.006	33.712	1	1131800			470	5565	236	239	475	475					0.0423751572599258
AAVSTHVAL	9	Unmodified	_AAVSTHVAL_					0	0	0		IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant;IHH|p.E379Rfs*18|2|0.25|ENSG00000163501|chr2:219055308-219055308|C/-|frameshift_variant;ENSG00000163501|ENST00000295731|IHH	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.7477111816406	2	434.747985	867.481417	-0.57842	-0.00025147	-0.085742	-3.7276E-05	-0.66416	-0.00028874	434.74801785520435	29.464	0.20825	29.464	29.379	29.587	0					7	5	2	0	0	0	0.1236	1	9927	9927		73.975	22.639	1	170970			471	5565	236	239	476	476					0.0423751572599258
AAVSTHVAL	9	Unmodified	_AAVSTHVAL_					0	0	0		IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant;IHH|p.E379Rfs*18|2|0.25|ENSG00000163501|chr2:219055308-219055308|C/-|frameshift_variant;ENSG00000163501|ENST00000295731|IHH	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.74774169921875	2	434.747985	867.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.649	1	29.649	29.149	30.149	0								0	0	0	0.03352	1	10886	10886		94.006	36.195	1				472	5565	236	239	477	477					0.0423751572599258
AAVVYDFLSR	10	Unmodified	_AAVVYDFLSR_					0	0	0		CYP2R1|p.N289Mfs*12|1|0.17|ENSG00000186104|chr11:14880270-14880270|T/-|frameshift_variant;CYP2R1|p.T463Yfs*14|1|0.28|ENSG00000186104|chr11:14878241-14878242|-/A|frameshift_variant;ENSG00000186104|ENST00000334636|CYP2R1	CYP2R1|p.N289Mfs*12|1|0.17|ENSG00000186104|chr11:14880270-14880270|T/-|frameshift_variant	CYP2R1|p.N289Mfs*12|1|0.17|ENSG00000186104|chr11:14880270-14880270|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.8060913085938	2	570.806031	1139.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.118	1	31.118	30.618	31.618	0								0	0	0	0.4201	1	11296	11296		20.947	0.95016	1				473	730	237	240	478	478					0.033294145060153824
AAWVTALNE	9	Unmodified	_AAWVTALNE_					0	0	0		nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2;ENST00000478372.1_1_21:43373107-43373571:-|nuORF	nc|ENSG00000157617|Q9Y426-3|C2CD2	nc|ENSG00000157617|Q9Y426-3|C2CD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.75054931640625	2	487.750724	973.486896	0.80394	0.00039212	-0.10654	-5.1963E-05	0.6974	0.00034016	487.7505482865652	28.599	0.31477	28.599	28.495	28.809	0					12	6	2	0	0	0	0.1115	1	10417	10417		76.774	4.8967	1	1404500			474	5225	238	241	479	479					-0.0009080548219344564
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7798767089844	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.884	1	33.884	33.384	34.384	0								0	0	0	0.2634	1	11054	11054		56.434	8.5182	1				475	3536	239	242	480	480					0.034500367233818
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7794494628906	2	511.779482	1021.54441	1.0292	0.00052673	-0.030777	-1.5751E-05	0.99844	0.00051098	511.7796276905491	34.143	0.46239	34.143	33.844	34.306	0					20	12	3	0	0	0	0.19191	1	12703	12703		80.455	42.643	1	567870			476	3536	239	242	481	481					0.034500367233818
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7796325683594	2	511.779482	1021.54441	-0.35315	-0.00018073	-0.05474	-2.8015E-05	-0.40789	-0.00020875	511.7798563874248	33.943	0.21615	33.943	33.882	34.098	0					12	8	2	0	0	0	0.3337	1	11426	11426		63.534	25.722	1	162740			477	3536	239	242	482	482					0.034500367233818
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7794494628906	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.16	1	34.16	33.66	34.66	0								0	0	0	0.10801	1	13142	13142		78.264	23.487	1				478	3536	239	242	483	483					0.034500367233818
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7791748046875	2	511.779482	1021.54441	0.41108	0.00021038	0.22448	0.00011489	0.63557	0.00032527	511.7795100479044	33.929	0.32726	33.929	33.712	34.039	0					15	9	3	0	0	0	0.4758	1	11967	11967		47.96	19.878	1	151480			479	3536	239	242	484	484					0.034500367233818
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7795715332031	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.937	1	33.937	33.437	34.437	0								0	0	0	0.33707	1	11964	11964		45.022	4.244	1				480	3536	239	242	485	485					0.034500367233818
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.77947998046875	2	511.779482	1021.54441	1.4087	0.00072094	-1.036	-0.00053019	0.37271	0.00019074	511.7791512416646	34.094	0.60095	34.094	33.842	34.443	0					20	12	3	0	0	0	0.030421	1	13041	13041		117.81	68.37	1	1162000			481	3536	239	242	486	486					0.034500367233818
AAYEGSVAK	9	Unmodified	_AAYEGSVAK_					0	0	0		CDAN1|p.T563Pfs*29|1|0.16|ENSG00000140326|chr15:42731673-42731673|G/-|frameshift_variant;nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	CDAN1|p.T563Pfs*29|1|0.16|ENSG00000140326|chr15:42731673-42731673|G/-|frameshift_variant	CDAN1|p.T563Pfs*29|1|0.16|ENSG00000140326|chr15:42731673-42731673|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2293395996094	2	448.229625	894.444697	-0.099898	-4.4777E-05	-0.27848	-0.00012482	-0.37838	-0.0001696	448.2295231283047	18.72	0.14672	18.72	18.661	18.807	0					5	3	2	0	0	0	0.048471	1	5804	5804		95.815	24.519	1	396400			482	433	240	243	487	487					-0.006747808905743113
AAYGPAPYL	9	Unmodified	_AAYGPAPYL_					0	0	0			REV__ENST00000477680.5_1_7:4815294-4829561:+|nuORF	REV__ENST00000477680.5_1_7:4815294-4829561:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7346496582031	2	461.737086	921.459619	-0.8261	-0.00038144	-3.7842	-0.0017473	-4.6103	-0.0021288	461.73518882371263	22.147	0.10566	22.147	22.071	22.176	0					5	3	2	0	0	0	0.52436	1	6481	6481		29.842	3.1486	1	62633	+		483	12177	241	244	488	488					-0.004252890225757255
AAYLHVVKA	9	Unmodified	_AAYLHVVKA_					0	0	0		ENST00000374232.7_1_9:115626678-115631377:+|nuORF	ENST00000374232.7_1_9:115626678-115631377:+|nuORF	ENST00000374232.7_1_9:115626678-115631377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.52716064453125	3	324.527277	970.560001	-0.70268	-0.00022804	0.028447	9.2318E-06	-0.67424	-0.00021881	324.5272681324208	30.498	0.23424	30.498	30.432	30.667	0					11	8	2	0	0	0	0.61124	1	10028	10028		27.882	6.9353	1	88407			484	9008	242	245	489	489					0.0735436803107632
AAYNVPLPK	9	Unmodified	_AAYNVPLPK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.77911376953125	2	486.779285	971.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.363	1	33.363	32.863	33.863	0								0	0	0	0.21054	1	11700	11700		49.442	14.241	1				485	3774	243	246	490	490					0.0571066179418267
AAYSHHYSK	9	Unmodified	_AAYSHHYSK_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2515869140625	2	532.251423	1062.48829	0.12499	6.6525E-05	1.4507	0.00077211	1.5756	0.00083864	532.2516576269562	14.297	0.12645	14.297	14.212	14.338	0					9	3	3	0	0	0	0.51991	1	3459	3459		30.318	1.1682	1	275430			486	1310	244	247	491	491					-0.04045171393431701
AAYTLWLGS	9	Unmodified	_AAYTLWLGS_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1;REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant	REV__nc|ENSG00000196218|P21817-2|RYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2571716308594	2	491.255643	980.496732	2.6968	0.0013248	-3.647	-0.0017916	-0.9502	-0.00046679	491.2562237540134	30.965	1.4946	30.965	30.458	31.952	0					72	30	4	0	0	0	0.2873	1	11528	11528		51.335	3.3759	1	1621700	+		487	17234;21482	245	248	492	492					0.005703825231876181
ACAIYAWLP	9	Unmodified	_ACAIYAWLP_					0	0	0			REV__ENST00000480324.5_1_1:111690336-111702181:+|nuORF	REV__ENST00000480324.5_1_1:111690336-111702181:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2521057128906	2	504.254588	1006.49462	-0.83637	-0.00042174	-3.5344	-0.0017822	-4.3708	-0.002204	504.2529517068465	35.097	0.16549	35.097	34.988	35.154	0					9	7	2	0	0	0	0.43174	1	11859	11859		39.021	2.5747	1	76225	+		488	12437	246	249	493	493					-0.008363694862850934
ACALDSDGTL	10	Unmodified	_ACALDSDGTL_					0	0	0		ENSG00000077348|ENST00000221233|EXOSC5	ENSG00000077348|ENST00000221233|EXOSC5	ENSG00000077348|ENST00000221233|EXOSC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2152404785156	2	483.215857	964.417161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.504	1	18.504	18.004	19.004	0								0	0	0	0.3428	1	4842	4842		44.117	3.3386	1				489	1582	247	250	494	494					-0.06647052213111238
ACALMAIVLG	10	Unmodified	_ACALMAIVLG_					0	0	0			REV__tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	REV__tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.26361083984375	2	481.264099	960.513645	0.085755	4.1271E-05	-2.9444	-0.0014171	-2.8587	-0.0013758	481.26341370724344	33.585	0.29463	33.585	33.485	33.779	0					25	11	3	0	0	0	0.21242	1	10929	10929		77.944	0	1	139330	+		490	21753	248	251	495	495					0.03180843813129286
ACCLMVAWRVS	11	2 Carbamidomethyl (C),Oxidation (M)	_AC(Carbamidomethyl (C))C(Carbamidomethyl (C))LM(Oxidation (M))VAWRVS_	AC(1)C(1)LMVAWRVS	ACCLM(1)VAWRVS	AC(46)C(46)LMVAWRVS	ACCLM(46)VAWRVS	0	2	1		ENST00000492730.1_1_1:207262876-207265203:+|nuORF;nc|ENSG00000123843|P20851-2|C4BPB;ENSG00000123843|ENST00000367078|C4BPB	ENST00000492730.1_1_1:207262876-207265203:+|nuORF	ENST00000492730.1_1_1:207262876-207265203:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.87957763671875	3	456.878887	1367.61483	-0.14627	-6.6828E-05	1.7693	0.00080835	1.623	0.00074152	456.87959048799786	14.806	0.11396	14.806	14.748	14.862	0					4	2	2	0	0	0	0.46959	1	3932	3932		46.457	11.305	1	238780			491	3337	249	252	496	496	131;132	143			-0.054270725464675706
ACDIIPQDE	9	Unmodified	_ACDIIPQDE_					0	0	0		ENSG00000140835|ENST00000539698|CHST4	ENSG00000140835|ENST00000539698|CHST4	ENSG00000140835|ENST00000539698|CHST4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.22369384765625	2	502.223682	1002.43281	0.70287	0.000353	-0.8916	-0.00044778	-0.18873	-9.4783E-05	502.2233171484375	34.307	0.50776	34.307	34.037	34.545	0					23	13	2	0	0	0	0.53083	1	12778	12778		29.15	3.5755	1	128140			492	4408	250	253	497	497					-0.06830765696065555
ACEKATLKAY	10	Carbamidomethyl (C)	_AC(Carbamidomethyl (C))EKATLKAY_	AC(1)EKATLKAY		AC(43)EKATLKAY		0	1	0			REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.7969360351562	2	577.797349	1153.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.479	1	39.479	38.979	39.979	0								0	0	0	0.35072	1	15531	15531		42.864	6.4175	1		+		493	21844	251	254	498	498	745				0.00949750908716851
ACFDDATL	8	Unmodified	_ACFDDATL_					0	0	0		ENST00000569516.5_1_16:904534-921479:-|nuORF;nc|ENSG00000103227|Q96S06-2|LMF1;ENSG00000103227|ENST00000262301|LMF1	ENST00000569516.5_1_16:904534-921479:-|nuORF	ENST00000569516.5_1_16:904534-921479:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.1832275390625	2	428.181286	854.348019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.316	1	15.316	14.816	15.816	0								0	0	0	1.7419	1	4010	4010		31.955	0	1				494	2224	252	255	499	499					-0.08498091442027089
ACFEPANQMVK	11	Unmodified	_ACFEPANQMVK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	619.28857421875	2	619.288834	1236.56311	0.175	0.00010837	-0.29345	-0.00018173	-0.11845	-7.3354E-05	619.288643306623	32.542	0.18174	32.542	32.465	32.646	0					19	8	3	0	0	0	0.33926	1	10520	10520		58.23	13.853	1	112670			495	3319	253	256	500	500					-0.04570492968741746
ACFEPANQMVK	11	Unmodified	_ACFEPANQMVK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	619.2885131835938	2	619.288834	1236.56311	-0.055207	-3.4189E-05	-0.37414	-0.0002317	-0.42935	-0.00026589	619.2889806263407	32.784	0.32589	32.784	32.656	32.981	0					26	8	4	0	0	0	0.10624	1	12056	12056		88.177	18.549	1	418770			496	3319	253	256	501	501					-0.04570492968741746
ACFEPANQMVK	11	Unmodified	_ACFEPANQMVK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	619.2899169921875	2	619.288834	1236.56311	-0.67085	-0.00041545	0.3631	0.00022486	-0.30775	-0.00019059	619.2893817461218	32.596	0.31048	32.596	32.49	32.801	0					29	12	3	0	0	0	0.42065	1	10875	10875		50.034	17.221	1	122390			497	3319	253	256	502	502					-0.04570492968741746
ACFEPANQMVK	11	Unmodified	_ACFEPANQMVK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	619.2886962890625	2	619.288834	1236.56311	1.1467	0.00071016	-1.5512	-0.00096067	-0.40451	-0.00025051	619.2880949392338	32.76	0.46933	32.76	32.639	33.109	0					29	11	4	0	0	0	0.15663	1	12471	12471		79.489	31.53	1	883530			498	3319	253	256	503	503					-0.04570492968741746
ACFEPANQMVK	11	Unmodified	_ACFEPANQMVK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	619.7897338867188	2	619.288834	1236.56311	-2.0629	-0.0012775	1.9845	0.001229	-0.078435	-4.8574E-05	619.2900279009957	32.575	0.38093	32.575	32.469	32.85	0					25	11	3	0	0	0	0.64626	1	11319	11319		32.751	4.669	1	161320			499	3319	253	256	504	504					-0.04570492968741746
ACFYDAED	8	Unmodified	_ACFYDAED_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000014147	REV__CON__ENSEMBL:ENSBTAP00000014147	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.16741943359375	2	467.168376	932.322198	-1.157	-0.00054053	-0.85417	-0.00039904	-2.0112	-0.00093957	467.1679269559451	18.08	0.32152	18.08	17.971	18.292	0					13	6	3	0	0	0	0.74117	1	5499	5499		28.254	28.254	1	354680	+	+	500	12575	254	257	505	505					-0.14666985684323208
ACGVNPVETY	10	Unmodified	_ACGVNPVETY_					0	0	0		ENSG00000116791|ENST00000340866|CRYZ;nc|ENSG00000116791|Q08257-3|CRYZ;ENST00000370872.7_1_1:75175905-75198642:-|nuORF	ENSG00000116791|ENST00000340866|CRYZ	ENSG00000116791|ENST00000340866|CRYZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7386474609375	2	526.739499	1051.46445	-1.2147	-0.00063982	-1.6779	-0.00088381	-2.8926	-0.0015236	526.7389701255381	40.271	0.11164	40.271	40.203	40.315	0					9	5	2	0	0	0	0.54197	1	14305	14305		40.778	5.1599	1	58787			501	3005	255	258	506	506					-0.059227729421081676
ACILNMLK	8	Carbamidomethyl (C),Oxidation (M)	_AC(Carbamidomethyl (C))ILNM(Oxidation (M))LK_	AC(1)ILNMLK	ACILNM(1)LK	AC(66)ILNMLK	ACILNM(66)LK	0	1	1		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;ENST00000515095.5_1_5:96228145-96238354:+|nuORF;ENST00000515387.1_1_5:96232124-96244694:+|nuORF;nc|ENSG00000164308|Q6P179-2|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7587585449219	2	489.759181	977.503808	-0.14034	-6.8731E-05	-2.7401	-0.001342	-2.8805	-0.0014107	489.75778841189106	33.478	0.25063	33.478	33.33	33.58	0					10	7	2	0	0	0	0.4434	1	11775	11775		65.897	11.133	1	63406			502	5682	256	259	507	507	236	230			0.014156558077502268
ACINWVKY	8	Unmodified	_ACINWVKY_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.75335693359375	2	498.752213	995.489873	3.38	0.0016858	-0.88892	-0.00044335	2.4911	0.0012424	498.7518016865743	25.905	0.27458	25.905	25.771	26.046	0					12	5	3	0	0	0	0.39542	1	8088	8088		71.378	71.378	1	1351900			503	1634	257	260	508	508					-0.008052536290392709
ACKCLSGSTI	10	Carbamidomethyl (C)	_AC(Carbamidomethyl (C))KCLSGSTI_	AC(1)KCLSGSTI		AC(41)KC(-41)LSGSTI		0	1	0			REV__OLFML2B|p.S113L|1|0.2|ENSG00000162745|chr1:162020019-162020019|G/A|missense_variant	REV__OLFML2B|p.S113L|1|0.2|ENSG00000162745|chr1:162020019-162020019|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.250244140625	2	520.249177	1038.4838	1.4587	0.00075888	0.11586	6.0273E-05	1.5745	0.00081915	520.2494446595933	19.539	0.12202	19.539	19.492	19.614	0					8	3	3	0	0	0	0.097781	1	5075	5075		95.815	8.1187	2	185790	+		504	21317	258	261	509	509	736				-0.03390139922862545
ACKCLSGSTI	10	Carbamidomethyl (C)	_AC(Carbamidomethyl (C))KCLSGSTI_	AC(1)KCLSGSTI		AC(40)KC(-40)LSGSTI		0	1	0			REV__OLFML2B|p.S113L|1|0.2|ENSG00000162745|chr1:162020019-162020019|G/A|missense_variant	REV__OLFML2B|p.S113L|1|0.2|ENSG00000162745|chr1:162020019-162020019|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2492065429688	2	520.249177	1038.4838	0.33043	0.0001719	-0.50107	-0.00026068	-0.17064	-8.8777E-05	520.2490606786328	19.799	0.11797	19.799	19.69	19.808	0					6	2	3	0	0	0	0.14426	1	6174	6174		87.696	8.2454	2	242900	+		505	21317	258	261	510	510	736				-0.03390139922862545
ACLCPHIS	8	Unmodified	_ACLCPHIS_					0	0	0			REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.6923828125	2	422.196216	842.37788	-0.95689	-0.00040399	-3.9902	-0.0016847	-4.9471	-0.0020887	422.1958936633537	42.741	0.74523	42.741	42.377	43.122	0					89	45	3	0	0	0	0.72892	1	14005	14005		29.842	1.9593	1	244660	+		506	20395	259	262	511	511					-0.04961430977675718
ACLKKIRM	8	Unmodified	_ACLKKIRM_					0	0	0		ENST00000566882.5_1_15:43482236-43485079:+|nuORF;ENST00000564630.5_1_15:43478389-43485079:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF;ENST00000568936.1_1_15:43482505-43485079:+|nuORF;nc|ENSG00000166946|O95273-4|CCNDBP1;nc|ENSG00000166946|O95273-3|CCNDBP1	ENST00000566882.5_1_15:43482236-43485079:+|nuORF	ENST00000566882.5_1_15:43482236-43485079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7870178222656	2	481.785533	961.556513	0.6893	0.0003321	1.7306	0.00083379	2.4199	0.0011659	481.7865467426113	27.212	0.266	27.212	27.055	27.321	0					12	5	3	0	0	0	0.6282	1	9847	9847		44.531	0.41427	1	617410			507	5953	260	263	512	512					0.07419658661217454
ACLSISAAIL	10	Unmodified	_ACLSISAAIL_					0	0	0		MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant;MED24|p.E720Gfs*14|1|0.41|ENSG00000008838|chr17:40023224-40023225|-/A|frameshift_variant;MED24|p.P805Rfs*53|1|0.29|ENSG00000008838|chr17:40022663-40022663|G/-|frameshift_variant;nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;THRA-MED24|1|fusion	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2702331542969	2	481.272978	960.531403	-0.62841	-0.00030244	-2.2158	-0.0010664	-2.8442	-0.0013688	481.27137905227863	38.99	0.30152	38.99	38.839	39.141	0					17	6	4	0	0	0	0.51121	1	15343	15343		44.117	10.601	1	352360			508	1022	261	264	513	513					0.04955882339629625
ACMGYPCCQYA	11	Unmodified	_ACMGYPCCQYA_					0	0	0			REV__nc|ENSG00000133067|Q9HBX8-2|LGR6	REV__nc|ENSG00000133067|Q9HBX8-2|LGR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.2127685546875	2	605.213423	1208.41229	-0.46773	-0.00028308	-1.5836	-0.0009584	-2.0513	-0.0012415	605.2123689313198	49.895	0.30477	49.895	49.81	50.115	0					25	12	3	0	0	0	0.69733	1	18000	18000		27.882	2.3082	1	212550	+		509	14694	262	265	514	514					-0.18357718943389045
ACMKRIPA	8	Carbamidomethyl (C),Oxidation (M)	_AC(Carbamidomethyl (C))M(Oxidation (M))KRIPA_	AC(1)MKRIPA	ACM(1)KRIPA	AC(47)MKRIPA	ACM(47)KRIPA	0	1	1			REV__ENST00000288828.8_1_7:5239256-5254189:+|nuORF	REV__ENST00000288828.8_1_7:5239256-5254189:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.74822998046875	2	481.749147	961.483742	-2.9225	-0.0014079	0.94199	0.0004538	-1.9805	-0.00095412	481.74963276246376	17.067	0.27886	17.067	16.991	17.27	0					19	8	4	0	0	0	0.61433	1	4168	4168		46.766	46.766	1	1089800	+		510	18149	263	266	515	515	642	679			0.0014590486779297862
ACNKSITAK	9	Unmodified	_ACNKSITAK_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000487755.1_1_1:155938929-155939834:-|nuORF;ENST00000465079.1_1_1:155938929-155948853:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.25213623046875	2	468.252577	934.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.122	1	14.122	13.622	14.622	0								0	0	0	0.19847	1	3594	3594		51.193	10.415	1				511	2989	264	267	516	516					0.020735410200018123
ACNLVLPTGDA	11	Unmodified	_ACNLVLPTGDA_					0	0	0		ENST00000326291.10_1_13:73356377-73356470:+|nuORF	ENST00000326291.10_1_13:73356377-73356470:+|nuORF	ENST00000326291.10_1_13:73356377-73356470:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2686157226562	2	537.268424	1072.5223	1.0339	0.00055549	1.2216	0.00065632	2.2555	0.0012118	537.268990728858	38.826	0.61947	38.826	38.237	38.857	0					50	31	2	0	0	0	0.7326	1	13876	13876		24.519	0.31644	1	107140			512	8649	265	268	517	517					-0.011065110167010062
ACQFLKLAP	9	Unmodified	_ACQFLKLAP_					0	0	0			REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4	REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7775573730469	2	495.775688	989.536823	0.73408	0.00036394	1.0076	0.00049953	1.7416	0.00086347	495.7763086846195	24.576	0.46394	24.576	24.45	24.914	0					20	11	3	0	0	0	0.25109	1	8301	8301		55.504	0	1	321550	+		513	13447	266	269	518	518					0.04163605922099123
ACQNGGTCH	9	Unmodified	_ACQNGGTCH_					0	0	0		NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1;NOTCH1|p.Y813Vfs*15|1|0.06|ENSG00000148400|chr9:136513051-136513052|-/C|frameshift_variant	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.6654357910156	2	445.665812	889.31707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.103	1	50.103	49.603	50.603	0								0	0	0	0.40021	1	18837	18837		10.866	1.395	1				514	4830	267	270	519	519					-0.13201568027920985
ACRCRAEE	8	Unmodified	_ACRCRAEE_					0	0	0		ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;ABCB8|p.G460Afs*31|1|0.34|ENSG00000197150|chr7:151040570-151040570|G/-|frameshift_variant;ENST00000470645.5_1_7:150733061-150737597:+|nuORF	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2040100097656	2	469.202561	936.390569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.774	1	15.774	15.274	16.274	0								0	0	0	1.7419	1	4381	4381		21.96	0.25755	1				515	7432	268	271	520	520					-0.0801701958545209
ACRKSDHLS	9	Unmodified	_ACRKSDHLS_					0	0	0		SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant;nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP	SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant	SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.50286865234375	3	339.502914	1015.48691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.271	1	12.271	11.771	12.771	0								0	0	0	0.3693	1	2328	2328		19.997	0	1				516	5061	269	272	521	521					-0.02021128753847279
ACSFKAIAG	9	Unmodified	_ACSFKAIAG_					0	0	0			REV__ENST00000484847.5_1_7:50343744-50343816:+|nuORF	REV__ENST00000484847.5_1_7:50343744-50343816:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.22479248046875	2	434.223288	866.432024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.227	1	15.227	14.727	15.727	0								0	0	0	0.16876	1	3887	3887		55.504	4.1688	1		+		517	19644	270	273	522	522					-0.006535155544611371
ACSLEKLV	8	Unmodified	_ACSLEKLV_					0	0	0		ENST00000599510.1_1_19:49299609-49300643:-|nuORF	ENST00000599510.1_1_19:49299609-49300643:-|nuORF	ENST00000599510.1_1_19:49299609-49300643:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7347412109375	2	431.738771	861.462989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.424	1	19.424	18.924	19.924	0								0	0	0	1.7419	1	6001	6001		76.847	11.043	1				518	11025	271	274	523	523					0.026716377597722385
ACSVVALMAL	10	Carbamidomethyl (C)	_AC(Carbamidomethyl (C))SVVALMAL_	AC(1)SVVALMAL		AC(71)SVVALMAL		0	1	0			REV__ENSG00000142396|ENST00000413518|ERVK3-1	REV__ENSG00000142396|ENST00000413518|ERVK3-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7706909179688	2	517.772288	1033.53002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.75	1	29.75	29.25	30.25	0								0	0	0	0.1423	1	10657	10657		71.296	11.177	1		+		519	15149	272	275	524	524	564				0.014599249792354385
ACTSLAKCLM	10	Carbamidomethyl (C)	_ACTSLAKC(Carbamidomethyl (C))LM_	ACTSLAKC(1)LM		AC(-43)TSLAKC(43)LM		0	1	0			REV__ENSG00000280236|ENST00000642051|OR12D2	REV__ENSG00000280236|ENST00000642051|OR12D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2606201171875	2	549.26123	1096.50791	1.7391	0.00095522	-4.2052	-0.0023097	-2.4661	-0.0013545	549.2595270625376	37.031	0.1643	37.031	36.962	37.127	0					10	5	3	0	0	0	0.32758	1	14466	14466		64.207	16.292	2	195160	+		520	17848	273	276	525	525	624				-0.03648622760874787
ACVIVFRF	8	Carbamidomethyl (C)	_AC(Carbamidomethyl (C))VIVFRF_	AC(1)VIVFRF		AC(47)VIVFRF		0	1	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2771911621094	2	506.275855	1010.53716	-0.25172	-0.00012744	2.5204	0.001276	2.2687	0.0011486	506.27723972864703	34.838	0.16283	34.838	34.734	34.897	0					6	3	2	0	0	0	0.61433	1	13406	13406		46.766	6.1938	1	153890			521	2173	274	277	526	526	84				0.03231025641969154
ADAARLPGAL	10	Unmodified	_ADAARLPGAL_					0	0	0		ENST00000355468.7_2_17:39967757-39967826:-|nuORF	ENST00000355468.7_2_17:39967757-39967826:-|nuORF	ENST00000355468.7_2_17:39967757-39967826:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7718811035156	2	477.771991	953.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.549	1	19.549	19.049	20.049	0								0	0	0	0.3652	1	5076	5076		40.573	5.3719	1				522	8796	275	278	527	527					0.05080589646047429
ADAARRSGE	9	Unmodified	_ADAARRSGE_					0	0	0			REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant	REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.72833251953125	2	466.730855	931.447156	-0.9459	-0.00044148	-3.6533	-0.0017051	-4.5992	-0.0021466	466.72900908065805	21.382	0.17412	21.382	21.254	21.428	0					7	5	2	0	0	0	0.42902	1	6142	6142		39.253	1.4413	1	43021	+		523	16513	276	279	528	528					-0.021309324328967705
ADADLLLRY	9	Unmodified	_ADADLLLRY_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.786865234375	2	525.284931	1048.55531	1.7745	0.00093212	-2.2268	-0.0011697	-0.45224	-0.00023756	525.7832273856925	37.422	0.52502	37.422	37.328	37.853	0					22	16	2	0	0	0	0.13726	1	14648	14648		74.255	34.197	1	166040			524	3404	277	280	529	529					0.032974390976505674
ADAGLRSSL	9	Unmodified	_ADAGLRSSL_					0	0	0			REV__ENST00000534407.5_1_11:124757602-124761787:-|nuORF	REV__ENST00000534407.5_1_11:124757602-124761787:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2394714355469	2	445.240524	888.466495	-1.1631	-0.00051785	-0.60976	-0.00027149	-1.7728	-0.00078934	445.2400813189689	23.122	0.12115	23.122	23.066	23.187	0					7	4	2	0	0	0	0.12239	1	6898	6898		74.255	1.3758	1	76636	+		525	20092	278	281	530	530					0.017800238579980032
ADALLLIAGG	10	Unmodified	_ADALLLIAGG_					0	0	0		SLC39A12|p.P91A|1|0.07|ENSG00000148482|chr10:17961590-17961590|C/G|missense_variant	SLC39A12|p.P91A|1|0.07|ENSG00000148482|chr10:17961590-17961590|C/G|missense_variant	SLC39A12|p.P91A|1|0.07|ENSG00000148482|chr10:17961590-17961590|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.271240234375	2	457.271293	912.528032	0.23162	0.00010591	-0.84203	-0.00038504	-0.61041	-0.00027912	457.2710199031548	31.155	0.21979	31.155	30.99	31.21	0					8	6	2	0	0	0	0.64178	1	10683	10683		29.15	2.4566	1	53505			526	22412	279	282	531	531					0.06826955557289693
ADALLQGLL	9	Unmodified	_ADALLQGLL_					0	0	0		SBK2|p.R305Q|1|0.17|ENSG00000187550|chr19:55529866-55529866|C/T|missense_variant	SBK2|p.R305Q|1|0.17|ENSG00000187550|chr19:55529866-55529866|C/T|missense_variant	SBK2|p.R305Q|1|0.17|ENSG00000187550|chr19:55529866-55529866|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2707824707031	2	457.271293	912.528032	0.76543	0.00035001	-0.87361	-0.00039948	-0.10818	-4.9467E-05	457.2707309258338	31.416	0.37258	31.416	31.211	31.584	0					15	9	2	0	0	0	0.20551	1	11409	11409		60.972	5.4677	1	176240			527	22375	280	283	532	532					0.06826955557301062
ADALSLNAL	9	Unmodified	_ADALSLNAL_					0	0	0			REV__ENSG00000183024|ENST00000328890|OR1G1	REV__ENSG00000183024|ENST00000328890|OR1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2451171875	2	444.245275	886.475997	-0.37102	-0.00016483	0.36689	0.00016299	-0.004134	-1.8365E-06	444.24532940063733	26.322	0.21783	26.322	26.192	26.409	0					10	5	3	0	0	0	0.19605	1	9075	9075		62.107	7.3311	1	354980	+		528	16907	281	284	533	533					0.028217921435157223
ADAPWSWGTH	10	Unmodified	_ADAPWSWGTH_					0	0	0		ARHGEF1|p.L344Wfs*12|2|0.31|ENSG00000076928|chr19:41896386-41896386|C/-|frameshift_variant	ARHGEF1|p.L344Wfs*12|2|0.31|ENSG00000076928|chr19:41896386-41896386|C/-|frameshift_variant	ARHGEF1|p.L344Wfs*12|2|0.31|ENSG00000076928|chr19:41896386-41896386|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2484130859375	2	564.24888	1126.48321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.174	1	25.174	24.674	25.674	0								0	0	0	0.30913	1	8903	8903		49.442	2.9848	1				529	212	282	285	534	534					-0.07497475256036523
ADASAIALAL	10	Unmodified	_ADASAIALAL_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2606201171875	2	458.260925	914.507297	0.12338	5.6542E-05	-0.44746	-0.00020505	-0.32407	-0.00014851	458.26071819672205	25.435	0.49292	25.435	25.296	25.789	0					35	12	4	0	0	0	0.26673	1	8075	8075		71.296	5.8303	1	1021600			530	1095	283	286	535	535					0.046623651775917097
ADATAPISYKS	11	Unmodified	_ADATAPISYKS_					0	0	0			REV__tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	REV__tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	375.1932373046875	3	375.192511	1122.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.144	1	20.144	19.644	20.644	0								0	0	0	0.45674	1	5342	5342		15.921	3.1089	1		+		531	21810	284	287	536	536					-0.0006718597312556085
ADAVKKAR	8	Unmodified	_ADAVKKAR_					0	0	0		nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant	nc|ENSG00000114416|P51114-3|FXR1	nc|ENSG00000114416|P51114-3|FXR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.76226806640625	2	429.761426	857.5083	-0.89467	-0.00038449	1.7098	0.00073482	0.81516	0.00035032	429.76232175548904	31.186	0.12209	31.186	31.132	31.254	0					6	4	2	0	0	0	0.75243	1	10330	10330		26.796	7.4361	1	31355			532	2847	285	288	537	537					0.07384624337180412
ADAWPVPEVQG	11	Unmodified	_ADAWPVPEVQG_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	390.19122314453125	3	390.192623	1167.55604	-2.1966	-0.00085711	-1.1402	-0.00044491	-3.3368	-0.001302	390.1922201513733	16.065	0.084957	16.065	16.014	16.099	0					4	2	2	0	0	0	0.67983	1	3738	3738		29.551	2.801	1	120660	+		533	16193	286	289	538	538					-0.021037662532989998
ADCSHPAL	8	Unmodified	_ADCSHPAL_					0	0	0			REV__MROH2B|p.T942A|1|0.2|ENSG00000171495|chr5:41017910-41017910|T/C|missense_variant	REV__MROH2B|p.T942A|1|0.2|ENSG00000171495|chr5:41017910-41017910|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.1817626953125	2	407.18162	812.348688	-0.12561	-5.1148E-05	1.2789	0.00052075	1.1533	0.00046961	407.1821494438463	29.385	0.2113	29.385	29.286	29.497	0					11	7	2	0	0	0	0.72892	1	9251	9251		29.842	1.5873	1	83282	+		534	20894	287	290	539	539					-0.06499252002322464
ADCSHPAL	8	Unmodified	_ADCSHPAL_					0	0	0			REV__MROH2B|p.T942A|1|0.2|ENSG00000171495|chr5:41017910-41017910|T/C|missense_variant	REV__MROH2B|p.T942A|1|0.2|ENSG00000171495|chr5:41017910-41017910|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.1822814941406	2	407.18162	812.348688	-0.88473	-0.00036025	1.857	0.00075614	0.97228	0.0003959	407.1825541950984	29.399	0.2115	29.399	29.299	29.511	0					13	8	2	0	0	0	0.61433	1	9559	9559		46.766	15.188	1	108800	+		535	20894	287	290	540	540					-0.06499252002322464
ADDGHDVVQ	9	Unmodified	_ADDGHDVVQ_					0	0	0			REV__ENST00000505325.1_1_5:60642967-60643258:+|nuORF	REV__ENST00000505325.1_1_5:60642967-60643258:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2090759277344	2	478.209421	954.404288	-0.28807	-0.00013776	-0.49376	-0.00023612	-0.78183	-0.00037388	478.209213513401	17.299	0.17695	17.299	17.213	17.39	0					10	4	3	0	0	0	0.14603	1	4862	4862		68.787	7.8149	1	566410	+		536	19832	288	291	541	541					-0.07473747280982934
ADDWKQEL	8	Unmodified	_ADDWKQEL_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7375793457031	2	502.737814	1003.46108	-0.51759	-0.00026021	0.17214	8.6542E-05	-0.34545	-0.00017367	502.7378383019087	30.302	0.19558	30.302	30.205	30.4	0					9	4	3	0	0	0	0.37378	1	11316	11316		73.975	7.5455	1	366290			537	6773	289	292	542	542					-0.04051699724482205
ADECHCGR	8	Unmodified	_ADECHCGR_					0	0	0			REV__FAT1|p.R4160C|1|0.5|ENSG00000083857|chr4:186597062-186597062|G/A|missense_variant	REV__FAT1|p.R4160C|1|0.5|ENSG00000083857|chr4:186597062-186597062|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.66668701171875	2	445.665812	889.31707	0.81622	0.00036376	-4.2945	-0.0019139	-3.4783	-0.0015502	445.6658000939626	49.905	0.50085	49.905	49.696	50.197	0					81	22	5	0	0	0	0.79882	1	19664	19664		19.36	2.8868	1	967510	+		538	20665	290	293	543	543					-0.13201568027909616
ADEKVIFGIE	10	Unmodified	_ADEKVIFGIE_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.7987670898438	2	560.797872	1119.58119	1.4347	0.00080459	0.26321	0.00014761	1.6979	0.00095219	560.7981302303558	38.124	0.30877	38.124	37.982	38.291	0					30	18	3	0	0	0	0.64162	1	12424	12424		29.17	0.020503	1	95664			539	5069	291	294	544	544					0.026182885492971764
ADELFGYHL	9	Unmodified	_ADELFGYHL_					0	0	0			REV__nc|ENSG00000162949|Q6MZZ7-2|CAPN13	REV__nc|ENSG00000162949|Q6MZZ7-2|CAPN13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7548828125	2	532.756007	1063.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.164	1	23.164	22.664	23.664	0								0	0	0	0.35899	1	6661	6661		23.042	1.0826	1		+		540	15847	292	295	545	545					-0.031748228277592716
ADEPLYLIHI	10	Unmodified	_ADEPLYLIHI_					0	0	0			REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2174987792969	3	395.216768	1182.62847	3.1735	0.0012542	-1.7655	-0.00069775	1.408	0.00055648	395.2159887201263	23.854	0.7659	23.854	23.747	24.513	0					29	15	2	0	0	0	0.68218	1	8163	8163		29.17	0	1	681590	+		541	17208	293	296	546	546					0.04446567820286873
ADEVQYTFQ	9	Unmodified	_ADEVQYTFQ_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.7486572265625	2	550.748379	1099.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.613	1	24.613	24.113	25.113	0								0	0	0	0.34845	1	8635	8635		25.574	0	1		+		542	16913	294	297	547	547					-0.06355734415615188
ADEVRKKMDPH	11	Unmodified	_ADEVRKKMDPH_					0	0	0			REV__CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	REV__CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.557861328125	3	442.559199	1324.65577	0.74774	0.00033092	-3.349	-0.0014821	-2.6012	-0.0011512	442.55756875979006	24.574	0.55814	24.574	24.213	24.771	0					16	11	3	0	0	0	0.69983	1	8507	8507		27.644	2.5179	1	561870	+		543	12379	295	298	548	548					0.006427280890420661
ADFETVRM	8	Unmodified	_ADFETVRM_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7295227050781	2	484.728935	967.443317	0.0010212	4.95E-07	0.15721	7.6205E-05	0.15823	7.67E-05	484.72915450500653	35.355	0.20551	35.355	35.28	35.485	0					15	10	2	0	0	0	0.39125	1	11579	11579		71.877	15.156	1	59651			544	4222	296	299	549	549					-0.041707382509684976
ADFETVRM	8	Unmodified	_ADFETVRM_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7282409667969	2	484.728935	967.443317	-1.2347	-0.00059852	0.69466	0.00033672	-0.54009	-0.0002618	484.729050531993	35.397	0.12489	35.397	35.332	35.457	0					10	6	2	0	0	0	0.5535	1	11970	11970		54.776	14.204	1	124900			545	4222	296	299	550	550					-0.041707382509684976
ADFETVRM	8	Unmodified	_ADFETVRM_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7289733886719	2	484.728935	967.443317	0.66159	0.00032069	-1.3234	-0.0006415	-0.66183	-0.00032081	484.7283393686202	35.61	0.30558	35.61	35.49	35.796	0					19	8	4	0	0	0	0.22502	1	13807	13807		131.03	48.726	1	665630			546	4222	296	299	551	551					-0.041707382509684976
ADFETVRM	8	Unmodified	_ADFETVRM_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7293395996094	2	484.728935	967.443317	-0.25788	-0.000125	0.50937	0.00024691	0.25149	0.00012191	484.72938503110447	35.409	0.20491	35.409	35.326	35.531	0					11	7	2	0	0	0	0.39125	1	12610	12610		71.877	7.6702	1	82345			547	4222	296	299	552	552					-0.041707382509684976
ADFETVRM	8	Unmodified	_ADFETVRM_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7286071777344	2	484.728935	967.443317	-0.57672	-0.00027955	-0.27991	-0.00013568	-0.85663	-0.00041523	484.7289538330594	35.543	0.22129	35.543	35.432	35.654	0					9	4	3	0	0	0	0.27242	1	13740	13740		143.89	69.632	1	614360			548	4222	296	299	553	553					-0.041707382509684976
ADFETVRM	8	Unmodified	_ADFETVRM_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7286682128906	2	484.728935	967.443317	0.85401	0.00041396	-1.532	-0.00074261	-0.678	-0.00032864	484.7282281397629	35.53	0.32148	35.53	35.415	35.737	0					17	6	4	0	0	0	0.23635	1	13735	13735		118.74	30.989	1	926670			549	4222	296	299	554	554					-0.041707382509684976
ADFGLARAF	9	Unmodified	_ADFGLARAF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000554619.5_1_12:56361683-56363594:+|nuORF;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000164885|Q00535-2|CDK5;nc|ENSG00000123374|P24941-2|CDK2;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000164885|ENST00000485972|CDK5;ENSG00000123374|ENST00000266970|CDK2;ENSG00000250506|ENST00000448471|CDK3;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.25299072265625	2	484.253434	966.492316	2.4474	0.0011852	-1.9329	-0.00093603	0.5145	0.00024915	484.252501810699	44.987	0.12908	44.987	44.907	45.036	0					9	5	2	0	0	0	0.098791	1	18017	18017		79.713	18.741	1	77854			550	6226	297	300	555	555					0.0077291810027873
ADFGVSVRTPV	11	Unmodified	_ADFGVSVRTPV_					0	0	0		sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	383.2085876464844	3	383.208384	1146.60332	3.5172	0.0013478	-3.9628	-0.0015186	-0.44559	-0.00017075	383.20706607518883	22.497	0.14021	22.497	22.445	22.585	0					7	4	2	0	0	0	0.64323	1	6635	6635		33.039	8.8076	1	81670			551	22444	298	301	556	556					0.03588513017712103
ADFLASVVFA	10	Unmodified	_ADFLASVVFA_					0	0	0		ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7797241210938	2	520.276575	1038.5386	1.623	0.00084439	1.7064	0.00088781	3.3294	0.0017322	520.2777503621105	42.203	0.096298	42.203	42.133	42.229	0					4	2	2	0	0	0	0.52707	1	16828	16828		42.396	0.96952	1	82526			552	7276	299	302	557	557					0.020869382117098212
ADFLLSSELAT	11	Unmodified	_ADFLLSSELAT_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	389.5379943847656	3	389.536166	1165.58667	3.4971	0.0013622	0.18568	7.233E-05	3.6827	0.0014346	389.5363205583108	21.173	0.17223	21.173	21.071	21.243	0					13	5	4	0	0	0	0.63225	1	6027	6027		34.087	3.5176	1	576370			553	4737	300	303	558	558					0.010499673411004551
ADGAHTGG	8	Unmodified	_ADGAHTGG_					0	0	0		ENST00000435287.1_1_6:132272117-132398394:+|nuORF	ENST00000435287.1_1_6:132272117-132398394:+|nuORF	ENST00000435287.1_1_6:132272117-132398394:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.15130615234375	2	343.148635	684.282717	0.48359	0.00016594	2.4348	0.00083551	2.9184	0.0010015	343.15121975210354	52.137	0.198	52.137	52.038	52.236	0					22	12	4	0	0	0	0.78999	1	18544	18544		13.775	0	1	213780			554	9523	301	304	559	559					-0.07205324852827744
ADGGEDVIIA	10	Unmodified	_ADGGEDVIIA_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2371520996094	2	480.237647	958.460741	-0.4974	-0.00023887	-0.013367	-6.4194E-06	-0.51076	-0.00024529	480.23740786489225	24.948	0.31141	24.948	24.778	25.089	0					11	6	2	0	0	0	0.58896	1	8798	8798		35.618	0.46626	1	118990	+		555	17692	302	305	560	560					-0.020151194443201348
ADGKGVVV	8	Unmodified	_ADGKGVVV_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.71600341796875	2	372.716153	743.417754	0.80333	0.00029941	-1.377	-0.00051325	-0.57372	-0.00021383	372.7156903897055	21.588	0.14912	21.588	21.533	21.682	0					5	3	2	0	0	0	0.37378	1	6894	6894		73.975	13.681	1	94335			556	2517	303	306	561	561					0.035781552889034174
ADGKKLLVQ	9	Unmodified	_ADGKKLLVQ_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant;DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2977294921875	2	486.297842	970.581131	0.64289	0.00031264	-0.5859	-0.00028492	0.056988	2.7713E-05	486.29742513108664	20.521	0.16677	20.521	20.412	20.579	0					10	3	4	0	0	0	0.39215	1	6678	6678		42.396	1.8235	1	1268300			557	5265	304	307	562	562					0.09466333339946686
ADGLSKPRE	9	Unmodified	_ADGLSKPRE_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7589111328125	2	486.759081	971.503609	0.63804	0.00031057	-1.0811	-0.00052625	-0.4431	-0.00021568	486.7586177249702	29.712	0.21887	29.712	29.599	29.818	0					12	4	3	0	0	0	0.16002	1	11044	11044		66.429	0.96389	1	785670	+		558	17330	305	308	563	563					0.016716954037633514
ADGLSLKSL	9	Unmodified	_ADGLSLKSL_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.26080322265625	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.89	1	30.89	30.39	31.39	0								0	0	0	0.3368	1	10189	10189		27.882	1.1893	1				559	11379	306	309	564	564					0.052143651776077604
ADGLSTLVK	9	Unmodified	_ADGLSTLVK_					0	0	0			REV__HBG2|p.K77N|1|0.06|ENSG00000196565|chr11:5254376-5254376|C/A|missense_variant	REV__HBG2|p.K77N|1|0.06|ENSG00000196565|chr11:5254376-5254376|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2607421875	2	452.260925	902.507297	0.25511	0.00011538	-1.1715	-0.00052983	-0.9164	-0.00041445	452.26045536498543	25.977	0.18374	25.977	25.886	26.07	0					6	4	2	0	0	0	0.1115	1	8915	8915		76.774	4.8967	1	121910	+		560	17270	307	310	565	565					0.05214365177630498
ADGPGPRCTA	10	Carbamidomethyl (C)	_ADGPGPRC(Carbamidomethyl (C))TA_	ADGPGPRC(1)TA		ADGPGPRC(41)TA		0	1	0			REV__ENST00000459638.5_3_3:69591404-69591638:-|nuORF	REV__ENST00000459638.5_3_3:69591404-69591638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2269592285156	2	501.227091	1000.43963	-2.1092	-0.0010572	1.9765	0.00099067	-0.13269	-6.6508E-05	501.22806471471625	19.095	0.35904	19.095	18.915	19.274	0					16	8	3	0	0	0	0.54197	1	5131	5131		40.778	7.2626	1	90629	+		561	19358	308	311	566	566	692				-0.06057408024844335
ADGQCKRYL	9	Unmodified	_ADGQCKRYL_					0	0	0			REV__ENSG00000090863|ENST00000422840|GLG1	REV__ENSG00000090863|ENST00000422840|GLG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2593383789062	2	527.260933	1052.50731	0.10383	5.4745E-05	-2.2925	-0.0012087	-2.1886	-0.001154	527.2596335607861	33.259	0.16625	33.259	33.173	33.339	0					10	4	3	0	0	0	0.30951	1	12289	12289		49.442	6.9671	1	213730	+		562	13430	309	312	567	567					-0.01683958094031368
ADGQPRWRP	9	Unmodified	_ADGQPRWRP_					0	0	0		ENST00000492190.5_1_5:126112854-126113319:+|nuORF;ENST00000460265.5_1_5:126112743-126113319:+|nuORF	ENST00000492190.5_1_5:126112854-126113319:+|nuORF	ENST00000492190.5_1_5:126112854-126113319:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.5206298828125	3	361.521185	1081.54173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.811	1	15.811	15.311	16.311	0								0	0	0	0.3245	1	4250	4250		30.318	0.76697	1				563	9718	310	313	568	568					0.004216261090959961
ADGRHRGGAG	10	Unmodified	_ADGRHRGGAG_					0	0	0			REV__ENST00000262738.7_1_22:46932303-46932903:-|nuORF	REV__ENST00000262738.7_1_22:46932303-46932903:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2376403808594	2	477.236639	952.458724	0.81584	0.00038935	1.0313	0.0004922	1.8472	0.00088155	477.23723230785816	17.97	0.20881	17.97	17.867	18.076	0					7	4	2	0	0	0	0.56931	1	5300	5300		37.812	37.812	1	1127700	+		564	18034	311	314	569	569					-0.01940690618903318
ADHGAELG	8	Unmodified	_ADHGAELG_					0	0	0			REV__ENST00000400109.2_1_13:19879361-19879751:-|nuORF	REV__ENST00000400109.2_1_13:19879361-19879751:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.1773376464844	2	385.177392	768.340232	0.1993	7.6764E-05	-0.28173	-0.00010852	-0.082437	-3.1753E-05	385.1772854628504	15.424	0.26141	15.424	15.322	15.584	0					11	5	3	0	0	0	0.57802	1	4227	4227		52.299	7.7681	1	665190	+		565	18942	312	315	570	570					-0.053204826472665445
ADHPVISTALG	11	Unmodified	_ADHPVISTALG_					0	0	0		ENST00000605573.1_1_3:187870847-187870946:-|nuORF	ENST00000605573.1_1_3:187870847-187870946:-|nuORF	ENST00000605573.1_1_3:187870847-187870946:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.8613586425781	3	360.860984	1079.56112	0.72975	0.00026334	0.37395	0.00013494	1.1037	0.00039828	360.8611478066278	21.221	0.69958	21.221	21.093	21.792	0					30	16	4	0	0	0	0.7098	1	6701	6701		36.318	8.2362	1	1863200			566	11074	313	316	571	571					0.024525376093151863
ADHTYNIIEY	10	Unmodified	_ADHTYNIIEY_					0	0	0		tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.86102294921875	3	413.527782	1237.56152	0.061266	2.5335E-05	-2.466	-0.0010198	-2.4048	-0.00099444	413.86112207246737	22.819	0.11869	22.819	22.76	22.878	0					4	2	2	0	0	0	0.68774	1	7793	7793		23.523	3.4922	1	67570			567	22899	314	317	572	572					-0.04776087461436873
ADIAKENR	8	Unmodified	_ADIAKENR_					0	0	0			REV__tr|U7SMJ5|U7SMJ5_FUSNUGeneralstressproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01893PE=4SV=1	REV__tr|U7SMJ5|U7SMJ5_FUSNUGeneralstressproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01893PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2662353515625	2	458.745973	915.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.634	1	19.634	19.134	20.134	0								0	0	0	1.7419	1	5352	5352		47.657	4.7931	1		+		568	21791	315	318	573	573					0.016274262322781397
ADIDDADAQ	9	Unmodified	_ADIDDADAQ_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.19281005859375	2	467.193436	932.37232	-0.65656	-0.00030674	-0.2754	-0.00012866	-0.93196	-0.0004354	467.1932003335696	49.662	0.94299	49.662	49.418	50.361	0					130	41	4	0	0	0	0.61124	1	17967	17967		15.642	0	1	3586100	+		569	14106	316	319	574	574					-0.09657159754817712
ADIKIHGM	8	Unmodified	_ADIKIHGM_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.73638916015625	2	442.736563	883.458573	-0.50801	-0.00022491	0.1447	6.4066E-05	-0.3633	-0.00016085	442.7365929670914	26.409	0.17031	26.409	26.298	26.469	0					5	3	2	0	0	0	0.63077	1	9339	9339		44.117	8.9161	1	195830			570	3575	317	320	575	575					0.012181733368720415
ADILHYSG	8	Unmodified	_ADILHYSG_					0	0	0		nc|ENSG00000188167|Q6ZT21-2|TMPPE;ENSG00000188167|ENST00000342462|TMPPE	nc|ENSG00000188167|Q6ZT21-2|TMPPE	nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2162170410156	2	438.216517	874.418482	-0.38533	-0.00016886	0.0056434	2.473E-06	-0.37968	-0.00016638	438.21649276609156	24.861	0.29309	24.861	24.726	25.019	0					18	7	4	0	0	0	0.49887	1	8412	8412		60.294	0	1	1712200			571	7241	318	321	576	576					-0.023750500620394632
ADIVLLPCIHH	11	Unmodified	_ADIVLLPCIHH_					0	0	0		nc|ENSG00000138780|Q8NEC7-3|GSTCD;GSTCD|p.N625Kfs*2|1|0.33|ENSG00000138780|chr4:105845544-105845545|-/A|frameshift_variant;ENSG00000138780|ENST00000515279|GSTCD;ENST00000484843.1_1_4:106638770-106744253:+|nuORF	nc|ENSG00000138780|Q8NEC7-3|GSTCD	nc|ENSG00000138780|Q8NEC7-3|GSTCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	410.8943176269531	3	410.893631	1229.65906	1.0078	0.00041411	0.59642	0.00024507	1.6043	0.00065918	410.8939393467472	22.65	0.2155	22.65	22.561	22.777	0					15	5	4	0	0	0	0.61618	1	7400	7400		37.508	2.3561	1	1276300			572	4291	319	322	577	577					0.05342022933655244
ADKFGSRRG	9	Unmodified	_ADKFGSRRG_					0	0	0			REV__ENST00000355295.4_1_9:100174408-100190800:+|nuORF	REV__ENST00000355295.4_1_9:100174408-100190800:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.26385498046875	2	497.264865	992.515176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.255	1	17.255	16.755	17.755	0								0	0	0	0.3245	1	5092	5092		30.318	6.115	1		+		573	18508	320	323	578	578					0.018619372177681726
ADKFITLP	8	Unmodified	_ADKFITLP_					0	0	0			REV__nc|ENSG00000186335|Q495M3-3|SLC36A2	REV__nc|ENSG00000186335|Q495M3-3|SLC36A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7590637207031	2	452.760561	903.506569	-0.11741	-5.316E-05	-3.9505	-0.0017886	-4.068	-0.0018418	452.75891544236225	25.163	0.16719	25.163	25.106	25.273	0					5	3	2	0	0	0	0.53424	1	8909	8909		56.721	1.2168	1	164470	+		574	14368	321	324	579	579					0.0509557052856735
ADKKLGGFLT	10	Unmodified	_ADKKLGGFLT_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.3028564453125	2	525.303124	1048.5917	1.6269	0.0008546	-0.82367	-0.00043268	0.8032	0.00042192	525.3027960101432	44.127	0.23153	44.127	44.01	44.241	0					13	10	2	0	0	0	0.52275	1	17695	17695		42.864	6.4175	1	37625	+		575	13046	322	325	580	580					0.06934315994362805
ADKRITPLK	9	Unmodified	_ADKRITPLK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.88531494140625	3	347.885353	1040.63423	0.50011	0.00017398	-0.92691	-0.00032246	-0.4268	-0.00014848	347.88511218663245	19.963	0.4193	19.963	19.6	20.019	0					21	9	3	0	0	0	0.22377	1	6130	6130		85.161	0	1	332960			576	5546	323	326	581	581					0.11553711122587629
ADKSGDVYSF	10	Unmodified	_ADKSGDVYSF_					0	0	0		nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4	nc|ENSG00000160193|P57081-2|WDR4	nc|ENSG00000160193|P57081-2|WDR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.75	2	544.748379	1087.4822	0.58404	0.00031816	0.8926	0.00048624	1.4766	0.0008044	544.7489356224972	40.496	0.19873	40.496	40.407	40.606	0					6	4	2	0	0	0	0.28036	1	16080	16080		69.628	8.6557	1	71404			577	5343	324	327	582	582					-0.05803734415621875
ADKTKARIVL	10	Unmodified	_ADKTKARIVL_					0	0	0		nc|ENSG00000169299|Q96G03-2|PGM2;ENST00000505986.5_1_4:37841281-37848924:+|nuORF;ENSG00000169299|ENST00000381967|PGM2;ENST00000515668.5_1_4:37841869-37848777:+|nuORF	nc|ENSG00000169299|Q96G03-2|PGM2	nc|ENSG00000169299|Q96G03-2|PGM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.23663330078125	3	372.236274	1113.68699	-1.0415	-0.0003877	1.0105	0.00037613	-0.031074	-1.1567E-05	372.23660815968566	20.56	0.099079	20.56	20.498	20.597	0					6	3	2	0	0	0	0.5155	1	5752	5752		43.651	6.1426	1	116800			578	6158	325	328	583	583					0.1346966918540602
ADLAPNKK	8	Unmodified	_ADLAPNKK_					0	0	0		BNC2|p.K630N|1|0.28|ENSG00000173068|chr9:16436304-16436304|C/A|missense_variant	BNC2|p.K630N|1|0.28|ENSG00000173068|chr9:16436304-16436304|C/A|missense_variant	BNC2|p.K630N|1|0.28|ENSG00000173068|chr9:16436304-16436304|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.748291015625	2	428.747985	855.481417	0.25502	0.00010934	-0.65998	-0.00028297	-0.40497	-0.00017363	428.74783688592373	20.633	0.15365	20.633	20.577	20.731	0					6	3	2	0	0	0	0.54629	1	6443	6443		55.504	4.1688	1	196720			579	307	326	329	584	584					0.047895157259858934
ADLAPPHPL	9	Unmodified	_ADLAPPHPL_					0	0	0			REV__ENST00000372004.7_1_20:46283286-46283376:+|nuORF	REV__ENST00000372004.7_1_20:46283286-46283376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7555847167969	2	465.75581	929.497067	0.67744	0.00031552	-1.4346	-0.00066816	-0.75714	-0.00035264	465.75513214343664	38.309	0.29111	38.309	38.202	38.493	0					9	6	2	0	0	0	0.50461	1	15066	15066		31.955	0	1	154250	+		580	18659	327	330	585	585					0.029498022430288984
ADLDLDMF	8	Oxidation (M)	_ADLDLDM(Oxidation (M))F_		ADLDLDM(1)F		ADLDLDM(52)F	0	0	1		ENST00000372591.1_2_1:41848017-41848350:+|nuORF;ENSG00000204060|ENST00000641094|FOXO6	ENST00000372591.1_2_1:41848017-41848350:+|nuORF	ENST00000372591.1_2_1:41848017-41848350:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.20904541015625	2	478.207501	954.400449	2.2443	0.0010732	1.161	0.00055519	3.4052	0.0016284	478.2080884036118	17.218	0.66048	17.218	17.107	17.767	0					21	13	2	0	0	0	0.57802	1	4937	4937		52.299	52.299	1	1835200			581	7669	328	331	586	586		311			-0.07857553099063352
ADLEERLI	8	Unmodified	_ADLEERLI_					0	0	0			REV__tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	REV__tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.76312255859375	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.247	1	31.247	30.747	31.747	0								0	0	0	1.7419	1	10735	10735		49.442	3.4693	1		+		582	21801	329	332	587	587					0.032654636892857525
ADLGGKIQML	10	Oxidation (M)	_ADLGGKIQM(Oxidation (M))L_		ADLGGKIQM(1)L		ADLGGKIQM(49)L	0	0	1			REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.286376953125	2	531.286617	1060.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.908	1	37.908	37.408	38.408	0								0	0	0	0.30913	1	13565	13565		49.442	7.0454	1		+		583	22190	330	333	588	588		806			0.03082365880004545
ADLGTQNL	8	Unmodified	_ADLGTQNL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	416.2138977050781	2	416.213975	830.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.343	1	21.343	20.843	21.843	0								0	0	0	1.7419	1	5867	5867		51.335	7.2187	1		+		584	16534	331	334	589	589					-0.008593539246589899
ADLHVLSL	8	Unmodified	_ADLHVLSL_					0	0	0			REV__ENSG00000168427|ENST00000409223|KLHL30	REV__ENSG00000168427|ENST00000409223|KLHL30	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.25128173828125	2	434.25036	866.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.766	1	41.766	41.266	42.266	0								0	0	0	1.7419	1	16632	16632		60.294	2.4827	1		+		585	16258	332	335	590	590					0.04758399868762808
ADLISSLGK	9	Unmodified	_ADLISSLGK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B;REV__ARHGEF1|p.L344Wfs*12|2|0.31|ENSG00000076928|chr19:41896386-41896386|C/-|frameshift_variant	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2605895996094	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.722	1	25.722	25.222	26.222	0								0	0	0	0.24544	1	8037	8037		44.377	3.599	1				586	4488;12208	333	336	591	591					0.052143651776077604
ADLLEQVR	8	Unmodified	_ADLLEQVR_					0	0	0			REV__nc|ENSG00000148356|Q6UWE0-3|LRSAM1	REV__nc|ENSG00000148356|Q6UWE0-3|LRSAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.26385498046875	2	472.263999	942.513445	-1.4423	-0.00068114	1.4302	0.00067543	-0.012108	-5.7182E-06	472.26454722711514	16.774	0.10948	16.774	16.699	16.808	0					7	4	2	0	0	0	0.61938	1	4090	4090		45.952	0	1	78956	+		587	15382	334	337	592	592					0.03988883409135724
ADLPKQQL	8	Unmodified	_ADLPKQQL_					0	0	0			REV__KIF4A|p.L841P|1|0.12|ENSG00000090889|chrX:70402598-70402598|T/C|missense_variant	REV__KIF4A|p.L841P|1|0.12|ENSG00000090889|chrX:70402598-70402598|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7610168457031	2	456.761092	911.507631	-0.43251	-0.00019756	0.3568	0.00016297	-0.075714	-3.4583E-05	456.761409515663	38.216	0.37993	38.216	37.904	38.283	0					12	8	2	0	0	0	0.58597	1	14981	14981		51.335	1.8939	1	55073	+		588	20787	335	338	593	593					0.04833784897471105
ADLPTHSAAL	10	Unmodified	_ADLPTHSAAL_					0	0	0		ENST00000464234.5_1_3:195474049-195480138:-|nuORF	ENST00000464234.5_1_3:195474049-195480138:-|nuORF	ENST00000464234.5_1_3:195474049-195480138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.26177978515625	2	498.261456	994.50836	-1.2868	-0.00064117	1.7043	0.00084919	0.4175	0.00020803	498.2621602388561	33.275	0.20699	33.275	33.178	33.385	0					12	8	2	0	0	0	0.58896	1	11151	11151		35.618	2.8059	1	114560			589	9767	336	339	594	594					0.010885795465128467
ADLRPCHHHA	10	Unmodified	_ADLRPCHHHA_					0	0	0		ENST00000590168.5_1_17:74470614-74471208:-|nuORF;ENST00000589582.5_1_17:74470609-74471208:-|nuORF	ENST00000590168.5_1_17:74470614-74471208:-|nuORF	ENST00000590168.5_1_17:74470614-74471208:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.7764282226562	2	578.775074	1155.53559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.681	1	11.681	11.181	12.181	0								0	0	0	0.4201	1	2204	2204		10.265	3.0719	1				590	10937	337	340	595	595					-0.03595215394079787
ADLVAVTKS	9	Unmodified	_ADLVAVTKS_					0	0	0		ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.26092529296875	2	452.260925	902.507297	-0.11448	-5.1777E-05	0.16509	7.4665E-05	0.05061	2.2889E-05	452.26091584982123	25.943	0.44773	25.943	25.653	26.101	0					12	7	3	0	0	0	0.087861	1	9238	9238		82.241	21.269	1	376820			591	4974	338	341	596	596					0.05214365177619129
ADLYGQRC	8	Unmodified	_ADLYGQRC_					0	0	0			REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2135009765625	2	463.213452	924.412351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.291	1	32.291	31.791	32.791	0								0	0	0	1.7419	1	12259	12259		25.45	0	1		+		592	13541	339	342	597	597					-0.05287891565217251
ADMMKEVWEET	11	Unmodified	_ADMMKEVWEET_					0	0	0			REV__nc|ENSG00000154760|Q68D06-2|SLFN13	REV__nc|ENSG00000154760|Q68D06-2|SLFN13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	684.792724609375	2	684.794146	1367.57374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.95	1	18.95	18.45	19.45	0								0	0	0	0.44926	1	4810	4810		26.063	6.9599	1		+		593	15575	340	343	598	598					-0.09534555104937681
ADNVKSPSVP	10	Unmodified	_ADNVKSPSVP_					0	0	0			REV__RPA4|p.E186K|1|0.45|ENSG00000204086|chrX:96884866-96884866|G/A|missense_variant	REV__RPA4|p.E186K|1|0.45|ENSG00000204086|chrX:96884866-96884866|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2668762207031	2	507.266739	1012.51892	-0.64735	-0.00032838	1.234	0.00062595	0.58662	0.00029757	507.26727096552224	30.17	0.30345	30.17	29.984	30.287	0					17	11	2	0	0	0	0.4287	1	9879	9879		53.089	8.9722	1	64307	+		594	21475	341	344	599	599					0.013165622009637445
ADPEVTDPQQ	10	Unmodified	_ADPEVTDPQQ_					0	0	0			REV__nc|ENSG00000170558|P19022-2|CDH2	REV__nc|ENSG00000170558|P19022-2|CDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.251708984375	2	550.248743	1098.48293	1.8161	0.00099929	4.3152	0.0023744	6.1312	0.0033737	550.2506676136364	15.476	0.24884	15.476	15.347	15.596	0					8	5	2	0	0	0	0.49411	1	4107	4107		45.972	0.020292	1	1049100	+		595	16366	342	345	600	600					-0.062369397665634096
ADPGVLSRLQ	10	Unmodified	_ADPGVLSRLQ_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2958984375	2	528.29583	1054.57711	0.91961	0.00048583	-0.22221	-0.00011739	0.6974	0.00036843	528.2956571978636	13.948	0.11852	13.948	13.889	14.007	0					4	2	2	0	0	0	0.43008	1	3526	3526		52.937	4.9772	1	76344	+		596	16220	343	346	601	601					0.052002438462295686
ADPMELAL	8	Oxidation (M)	_ADPM(Oxidation (M))ELAL_		ADPM(1)ELAL		ADPM(52)ELAL	0	0	1			REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2143859863281	2	438.212586	874.410619	2.663	0.001167	1.3944	0.00061104	4.0574	0.001778	438.21321396125035	20.617	0.31631	20.617	20.511	20.828	0					11	6	2	0	0	0	0.57802	1	6615	6615		52.299	9.8247	1	724590	+		597	21744	344	347	602	602		790			-0.03160945373838331
ADQETSGKPL	10	Unmodified	_ADQETSGKPL_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.269775390625	2	523.261653	1044.50875	-1.2857	-0.00067274	0.89618	0.00046894	-0.38949	-0.00020381	523.2622638384445	24.215	0.43705	24.215	24.11	24.547	0					23	10	4	0	0	0	0.1725	1	7506	7506		61.691	8.0944	1	738760	+		598	13767	345	348	603	603					-0.011720455242766548
ADQFGFLVV	9	Unmodified	_ADQFGFLVV_					0	0	0			REV__nc|ENSG00000197442|Q99683-2|MAP3K5	REV__nc|ENSG00000197442|Q99683-2|MAP3K5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.263671875	2	498.263468	994.512382	-0.70229	-0.00034993	-2.5557	-0.0012734	-3.258	-0.0016233	498.2620126371545	28.181	0.73275	28.181	27.88	28.613	0					20	15	2	0	0	0	0.57706	1	10489	10489		24.203	0	1	65943	+		599	17334	346	349	604	604					0.014906690402312961
ADQTGVLVL	9	Unmodified	_ADQTGVLVL_					0	0	0			REV__AGAP1|p.N248Ifs*28|1|0.43|ENSG00000157985|chr2:235797827-235797827|A/-|frameshift_variant	REV__AGAP1|p.N248Ifs*28|1|0.43|ENSG00000157985|chr2:235797827-235797827|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2610168457031	2	458.260925	914.507297	-0.64513	-0.00029564	0.58549	0.00026831	-0.059633	-2.7327E-05	458.26124219837413	31.978	0.21136	31.978	31.887	32.099	0					13	5	3	0	0	0	0.26904	1	11703	11703		53.351	1.0523	1	216580	+		600	12104	347	350	605	605					0.04662365177614447
ADQVTVLLC	9	Unmodified	_ADQVTVLLC_					0	0	0		ENST00000566470.1_1_16:30216115-30216589:-|nuORF	ENST00000566470.1_1_16:30216115-30216589:-|nuORF	ENST00000566470.1_1_16:30216115-30216589:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.25494384765625	2	481.254785	960.495018	0.40316	0.00019402	-1.0432	-0.00050204	-0.64004	-0.00030802	481.25434516031237	31.194	0.38752	31.194	31.053	31.441	0					22	9	3	0	0	0	0.53083	1	11298	11298		29.15	1.2673	1	242110			601	10763	348	351	606	606					0.013190054429287557
ADSALLKGAL	10	Unmodified	_ADSALLKGAL_					0	0	0			REV__ENST00000569516.5_1_16:904534-921479:-|nuORF	REV__ENST00000569516.5_1_16:904534-921479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7815856933594	2	479.782025	957.549496	-0.30755	-0.00014756	-1.1968	-0.00057419	-1.5043	-0.00072175	479.7817191669083	35.527	0.28627	35.527	35.438	35.724	0					29	11	4	0	0	0	0.36476	1	12646	12646		60.118	2.307	1	317160	+		602	13670	349	352	607	607					0.06902340586009359
ADSGRGEGLV	10	Unmodified	_ADSGRGEGLV_					0	0	0			REV__ENST00000459905.5_1_9:139835382-139837220:-|nuORF	REV__ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.74029541015625	2	480.740888	959.467223	0.073153	3.5168E-05	-0.5301	-0.00025484	-0.45695	-0.00021967	480.74069225685304	16.507	0.19776	16.507	16.385	16.583	0					9	5	2	0	0	0	0.36476	1	3913	3913		60.118	3.3972	1	156530	+		603	15699	350	353	608	608					-0.014131814929442044
ADSILAVKK	9	Unmodified	_ADSILAVKK_					0	0	0		ENSG00000197919|ENST00000276927|IFNA1;ENSG00000233816|ENST00000610660|IFNA13	ENSG00000197919|ENST00000276927|IFNA1	ENSG00000197919|ENST00000276927|IFNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7928466796875	2	472.792392	943.570232	-0.55584	-0.00026279	0.22558	0.00010665	-0.33026	-0.00015614	472.7924707527192	24.611	1.0179	24.611	23.768	24.786	0					63	23	4	0	0	0	0.33044	1	8091	8091		47.657	0	1	2630000			604	7508	351	354	609	609					0.0961893096566655
ADSKKLESKLD	11	Unmodified	_ADSKKLESKLD_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.8934326171875	3	411.894354	1232.66123	-0.44641	-0.00018387	-1.8883	-0.00077779	-2.3347	-0.00096166	411.89364440378796	22.948	0.21434	22.948	22.839	23.053	0					11	4	3	0	0	0	0.59078	1	7719	7719		37.6	6.5317	1	460780			605	2038	352	355	610	610					0.0542073015249116
ADSKLHGKF	9	Unmodified	_ADSKLHGKF_					0	0	0		ENST00000518913.5_1_8:22034120-22058713:+|nuORF;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;nc|ENSG00000168487|P13497-6|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;BMP1|p.V817Sfs*52|1|0.34|ENSG00000168487|chr8:22207385-22207385|C/-|frameshift_variant;ENSG00000168487|ENST00000306385|BMP1	ENST00000518913.5_1_8:22034120-22058713:+|nuORF	ENST00000518913.5_1_8:22034120-22058713:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.77362060546875	2	501.771991	1001.52943	3.5229	0.0017677	-0.66848	-0.00033542	2.8544	0.0014323	501.7717980675816	19.228	0.59955	19.228	18.802	19.402	0					57	18	5	0	0	0	0.53083	1	5006	5006		29.15	0	1	1482400			606	304	353	356	611	611					0.02872589646040069
ADSLAIKKV	9	Unmodified	_ADSLAIKKV_					0	0	0			REV__ENSG00000141639|ENST00000400384|MAPK4	REV__ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7930603027344	2	472.792392	943.570232	-0.33801	-0.00015981	-0.050613	-2.3929E-05	-0.38863	-0.00018374	472.79237927256366	24.318	0.71541	24.318	23.681	24.396	0					50	24	3	0	0	0	0.39215	1	6980	6980		42.396	0	1	379260	+		607	15126	354	357	612	612					0.09618930965655181
ADSNDPLW	8	Unmodified	_ADSNDPLW_					0	0	0			REV__ENSG00000104804|ENST00000221399|TULP2	REV__ENSG00000104804|ENST00000221399|TULP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.20404052734375	2	459.203607	916.392661	0.72255	0.0003318	-0.44532	-0.00020449	0.27723	0.0001273	459.2037859023981	49.501	0.74893	49.501	49.292	50.041	0					115	29	5	0	0	0	0.8006	1	18697	18697		20.482	1.1219	1	5356600	+		608	13736	355	358	613	613					-0.06887944304321536
ADSNPPPLL	9	Unmodified	_ADSNPPPLL_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2449645996094	2	462.245275	922.475997	-0.23803	-0.00011003	-0.12053	-5.5715E-05	-0.35856	-0.00016574	462.2451870284085	26.044	0.14318	26.044	25.95	26.093	0					5	3	2	0	0	0	0.33044	1	8324	8324		47.657	4.7931	1	74861			609	2386	356	359	614	614					0.011657921435357821
ADTKHGAL	8	Unmodified	_ADTKHGAL_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.7166442871094	2	406.716685	811.418816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.072	1	24.072	23.572	24.572	0								0	0	0	1.7419	1	8253	8253		79.939	3.0926	1				610	5705	357	360	615	615					0.0055636965781786785
ADTPKASK	8	Unmodified	_ADTPKASK_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.22418212890625	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.273	1	16.273	15.773	16.773	0								0	0	0	1.7419	1	4471	4471		52.937	5.2794	1				611	7876	358	361	616	616					0.018572364549982012
ADTVRVVSEP	10	Unmodified	_ADTVRVVSEP_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7841186523438	2	536.785296	1071.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.627	1	46.627	46.127	47.127	0								0	0	0	0.34115	1	18652	18652		44.377	13.874	1		+		612	12733	359	362	617	617					0.023122337467157195
ADTVTAYGEY	10	Unmodified	_ADTVTAYGEY_					0	0	0			REV__nc|ENSG00000254986|Q9NY33-4|DPP3	REV__nc|ENSG00000254986|Q9NY33-4|DPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7385864257812	2	545.240386	1088.46622	-1.497	-0.0008162	-3.3705	-0.0018377	-4.8674	-0.0026539	545.2380998058208	35.169	0.17538	35.169	35.074	35.249	0					7	5	2	0	0	0	0.37692	1	12509	12509		58.782	7.4465	1	68275	+		613	17750	360	363	618	618					-0.07447440652504156
ADVARGMDY	9	Unmodified	_ADVARGMDY_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.22607421875	2	499.224017	996.43348	2.9178	0.0014567	0.89159	0.0004451	3.8094	0.0019018	499.22444626027135	39.372	0.37033	39.372	39.273	39.643	0					16	8	3	0	0	0	0.2873	1	15564	15564		51.335	1.8939	1	501980			614	3162	361	364	619	619					-0.06487926256352239
ADVHEPPL	8	Unmodified	_ADVHEPPL_					0	0	0			REV__USH2A|p.S2148A|1|0.2|ENSG00000042781|chr1:216000446-216000446|A/C|missense_variant	REV__USH2A|p.S2148A|1|0.2|ENSG00000042781|chr1:216000446-216000446|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.224365234375	2	439.224342	876.434132	-0.37055	-0.00016276	0.020644	9.0674E-06	-0.34991	-0.00015369	439.22430616468347	32.969	0.51495	32.969	32.65	33.165	0					16	12	2	0	0	0	0.61433	1	12553	12553		46.766	2.2354	1	87906	+		615	22267	362	365	620	620					-0.009027635450024718
ADVIEGTLLTV	11	Unmodified	_ADVIEGTLLTV_					0	0	0			REV__FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant	REV__FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.5486145019531	3	377.548295	1129.62306	0.81098	0.00030618	-3.6085	-0.0013624	-2.7975	-0.0010562	377.88082165950135	23.544	0.44463	23.544	23.401	23.846	0					29	10	4	0	0	0	0.67983	1	7797	7797		29.551	0.38069	1	852450	+		616	13780	363	366	621	621					0.0634284423781537
ADVIIHEI	8	Unmodified	_ADVIIHEI_					0	0	0		ENST00000471105.5_1_1:201965436-201974841:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.2558898925781	2	455.255643	908.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.774	1	37.774	37.274	38.274	0								0	0	0	1.7419	1	14797	14797		45.952	3.5558	1				617	6604	364	367	622	622					0.03882382523170236
ADVKEKEAQ	9	Unmodified	_ADVKEKEAQ_					0	0	0			REV__ENST00000470800.1_1_21:30518012-30547210:+|nuORF	REV__ENST00000470800.1_1_21:30518012-30547210:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.26409912109375	2	509.264196	1016.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.73	1	28.73	28.23	29.23	0								0	0	0	0.27025	1	9290	9290		40.778	0.20554	1		+		618	15623	365	368	623	623					0.006242583383254896
ADVKQVKV	8	Unmodified	_ADVKQVKV_					0	0	0		ENSG00000185565|ENST00000490035|LSAMP	ENSG00000185565|ENST00000490035|LSAMP	ENSG00000185565|ENST00000490035|LSAMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7713317871094	2	443.77146	885.528367	-1.1592	-0.00051441	1.2352	0.00054816	0.07605	3.3749E-05	443.7719417510344	29.818	0.15334	29.818	29.752	29.906	0					10	6	2	0	0	0	0.54629	1	9732	9732		55.504	4.3115	1	94950			619	7087	366	369	624	624					0.08102375277144347
ADVKRYSLM	9	Unmodified	_ADVKRYSLM_					0	0	0			REV__ENST00000501104.2_1_8:70749366-70749438:+|nuORF	REV__ENST00000501104.2_1_8:70749366-70749438:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.5269775390625	3	361.526948	1081.55902	-0.93573	-0.00033829	0.96129	0.00034753	0.025558	9.2398E-06	361.52724917980674	23.21	0.10416	23.21	23.148	23.252	0					8	3	3	0	0	0	0.59802	1	6938	6938		16.717	0	1	130040	+		620	19806	367	370	625	625					0.021497855998632076
ADVKVHIL	8	Unmodified	_ADVKVHIL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.77398681640625	2	447.774003	893.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.821	1	30.821	30.321	31.321	0								0	0	0	1.7419	1	11153	11153		76.847	11.043	1				621	2947	368	371	626	626					0.08242679139755182
ADVKVHIL	8	Unmodified	_ADVKVHIL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7738952636719	2	447.774003	893.533452	0.62376	0.0002793	-0.90131	-0.00040358	-0.27755	-0.00012428	447.7735543771768	30.773	0.26902	30.773	30.68	30.949	0					16	6	4	0	0	0	0.3961	1	11549	11549		71.296	17.944	1	813280			622	2947	368	371	627	627					0.08242679139755182
ADVKVHIL	8	Unmodified	_ADVKVHIL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.7737731933594	2	447.774003	893.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.576	1	30.576	30.076	31.076	0								0	0	0	1.7419	1	10430	10430		53.351	7.3995	1				623	2947	368	371	628	628					0.08242679139755182
ADVLREFAQ	9	Unmodified	_ADVLREFAQ_					0	0	0			REV__ENSG00000169213|ENST00000371655|RAB3B	REV__ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.775390625	2	524.774731	1047.53491	1.1516	0.00060434	1.2397	0.00065058	2.3914	0.0012549	524.7753347318945	23.127	0.13979	23.127	23.033	23.173	0					6	3	2	0	0	0	0.18416	1	7018	7018		63.534	6.8128	1	71865	+		624	16300	369	372	629	629					0.013042684378433478
ADVNLLIAI	9	Unmodified	_ADVNLLIAI_					0	0	0		tr|U7SRQ0|U7SRQ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01618PE=4SV=1	tr|U7SRQ0|U7SRQ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01618PE=4SV=1	tr|U7SRQ0|U7SRQ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01618PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.3056335449219	2	471.286943	940.559333	-0.55367	-0.00026094	-0.088194	-4.1565E-05	-0.64186	-0.0003025	471.28692922390235	38.704	1.2374	38.704	37.904	39.141	0					82	26	5	0	0	0	0.24095	1	15409	15409		56.721	7.2795	1	3509900			625	22726	370	373	630	630					0.0866752859137705
ADVPAPACAAE	11	Unmodified	_ADVPAPACAAE_					0	0	0		ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.732177734375	2	507.731674	1013.4488	0.088351	4.4859E-05	0.10603	5.3835E-05	0.19438	9.8694E-05	507.73179424821546	32.504	0.58536	32.504	32.314	32.9	0					32	17	2	0	0	0	0.42746	1	11464	11464		49.536	7.0616	1	109880			626	5692	371	374	631	631					-0.057390594591765876
ADVRFRPV	8	Unmodified	_ADVRFRPV_					0	0	0		ENST00000571710.5_1_17:1945213-1945339:+|nuORF	ENST00000571710.5_1_17:1945213-1945339:+|nuORF	ENST00000571710.5_1_17:1945213-1945339:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.27374267578125	2	480.274701	958.534849	-1.3847	-0.00066505	-0.57461	-0.00027597	-1.9593	-0.00094102	480.2743493128662	33.789	0.58379	33.789	33.565	34.149	0					56	22	4	0	0	0	0.46905	1	11313	11313		63.306	5.495	1	2187600			627	10806	372	375	632	632					0.05392313228514922
ADVRKESVF	9	Unmodified	_ADVRKESVF_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7836303710938	2	525.782556	1049.55056	0.51043	0.00026837	-0.24539	-0.00012902	0.26504	0.00013935	525.7823232419299	33.633	1.1641	33.633	33.361	34.525	0					134	47	6	0	0	0	0.41113	1	11604	11604		40.778	3.6191	1	47966000			628	7456	373	376	633	633					0.027765549549030766
ADVTAKKAHS	10	Unmodified	_ADVTAKKAHS_					0	0	0			REV__ENST00000587506.1_1_19:30528395-30528668:+|nuORF	REV__ENST00000587506.1_1_19:30528395-30528668:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.1891174316406	3	343.189212	1026.54581	-1.9512	-0.00066963	1.303	0.00044719	-0.64816	-0.00022244	343.18972258881064	17.95	0.25111	17.95	17.85	18.101	0					13	5	4	0	0	0	0.54197	1	4591	4591		37.508	6.9393	1	1289200	+		629	17817	374	377	634	634					0.033596708121422125
ADVWETFQQ	9	Unmodified	_ADVWETFQQ_					0	0	0		ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	ENSG00000083807|ENST00000263093|SLC27A5	ENSG00000083807|ENST00000263093|SLC27A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.25537109375	2	562.256371	1122.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.879	1	19.879	19.379	20.379	0								0	0	0	0.27939	1	6357	6357		39.253	1.4413	1				630	1701	375	378	635	635					-0.05816028178742272
ADWAAKKL	8	Unmodified	_ADWAAKKL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.75799560546875	2	451.758352	901.502152	-0.32104	-0.00014503	-0.17969	-8.1177E-05	-0.50073	-0.00022621	451.7582842450131	25.108	0.14213	25.108	25.044	25.186	0					7	4	2	0	0	0	0.58597	1	7509	7509		51.335	7.2187	1	65511			631	2007	376	379	636	636					0.0474610610565378
ADWAAKKL	8	Unmodified	_ADWAAKKL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.758056640625	2	451.758352	901.502152	-0.5102	-0.00023048	-0.066493	-3.0039E-05	-0.57669	-0.00026052	451.7583798858178	25.37	0.17899	25.37	25.275	25.454	0					12	4	3	0	0	0	0.25873	1	8669	8669		96.19	24.895	1	549020			632	2007	376	379	637	637					0.0474610610565378
ADYPAQSPL	9	Unmodified	_ADYPAQSPL_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000493216.1_1_22:20939554-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.23614501953125	2	481.234907	960.455261	2.3458	0.0011289	0.32466	0.00015624	2.6704	0.0012851	481.2350284926128	42.404	0.2959	42.404	42.285	42.581	0					12	8	2	0	0	0	0.35021	1	16897	16897		45.972	3.5761	1	114630			633	1949	377	380	638	638					-0.02654798236142142
ADYSVFQVEIS	11	Unmodified	_ADYSVFQVEIS_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.I2732Lfs*15|1|0.34|ENSG00000118997|chr2:195857597-195857597|T/-|frameshift_variant;DNAH7|p.T2935Ifs*12|1|0.24|ENSG00000118997|chr2:195845142-195845143|AG/-|frameshift_variant;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	629.3018188476562	2	629.303518	1256.59248	-0.093461	-5.8815E-05	-2.7542	-0.0017332	-2.8477	-0.001792	629.3017296791642	15.905	0.11348	15.905	15.849	15.962	0					4	2	2	0	0	0	0.36165	1	4456	4456		54.722	4.6978	1	203240			634	3092	378	381	639	639					-0.025549341472242304
AEAAQDATL	9	Unmodified	_AEAAQDATL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2168273925781	2	445.216714	888.418876	0.80093	0.00035659	-0.80542	-0.00035858	-0.0044865	-1.9975E-06	445.2165898802706	32.059	0.46875	32.059	31.852	32.321	0					24	9	3	0	0	0	0.26904	1	12017	12017		53.351	3.9099	1	865380			635	2592	379	382	640	640					-0.029796751328490245
AEADKIYSF	9	Unmodified	_AEADKIYSF_					0	0	0		ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2556762695312	2	522.25584	1042.49713	1.5956	0.00083329	-0.82991	-0.00043343	0.76565	0.00039986	522.2552522568718	38.069	0.15426	38.069	37.984	38.138	0					10	7	2	0	0	0	0.16806	1	14453	14453		65.465	19.493	1	65295			636	6801	380	383	641	641					-0.022422425476179342
AEADKIYSF	9	Unmodified	_AEADKIYSF_					0	0	0		ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2572021484375	2	522.25584	1042.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.027	1	38.027	37.527	38.527	0								0	0	0	0.24544	1	14916	14916		44.377	1.5129	1				637	6801	380	383	642	642					-0.022422425476179342
AEADKIYSF	9	Unmodified	_AEADKIYSF_					0	0	0		ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2569580078125	2	522.25584	1042.49713	1.6247	0.00084852	1.949	0.0010179	3.5737	0.0018664	522.2561611552467	37.98	0.25209	37.98	37.787	38.039	0					10	5	3	0	0	0	0.18416	1	14907	14907		63.534	5.3039	1	125370			638	6801	380	383	643	643					-0.022422425476179342
AEAEAASVRM	10	Unmodified	_AEAEAASVRM_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1;nc|ENSG00000137312|O75955-2|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7501220703125	2	517.750398	1033.48624	1.3121	0.00067933	-2.2461	-0.0011629	-0.93405	-0.0004836	517.7493116224466	25.711	0.13214	25.711	25.624	25.756	0					8	3	3	0	0	0	0.057264	1	8828	8828		106.88	31.837	1	292440			639	4159	381	384	644	644					-0.02915968193565277
AEAEAITSQKL	11	Unmodified	_AEAEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.810791015625	2	580.81151	1159.60847	0.66492	0.00038619	-1.2397	-0.00072	-0.57473	-0.00033381	580.8107938927867	30.201	0.12495	30.201	30.102	30.227	0					6	4	2	0	0	0	0.20042	1	9598	9598		73.841	36.333	1	57996			640	7654	382	385	645	645					0.03504772089650032
AEAEAITSQKL	11	Unmodified	_AEAEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.8115234375	2	580.81151	1159.60847	-1.6906	-0.00098192	0.19063	0.00011072	-1.5	-0.0008712	580.8117449797435	30.248	0.11509	30.248	30.175	30.29	0					5	3	2	0	0	0	0.43096	1	10285	10285		47.228	14.477	1	82269			641	7654	382	385	646	646					0.03504772089650032
AEAEASSPK	9	Unmodified	_AEAEASSPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2169189453125	2	445.216714	888.418876	0.56372	0.00025098	-0.3934	-0.00017515	0.17032	7.5829E-05	445.21671273017006	32.089	0.57259	32.089	31.844	32.416	0					30	12	3	0	0	0	0.21263	1	12131	12131		60.118	8.9256	1	873630			642	3401	383	386	647	647					-0.029796751328490245
AEAEKKVQL	9	Unmodified	_AEAEKKVQL_					0	0	0		TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant;ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.29217529296875	2	508.292756	1014.57096	-0.025219	-1.2818E-05	-0.3937	-0.00020012	-0.41892	-0.00021293	508.2921184952706	20.472	0.23749	20.472	20.373	20.61	0					11	5	4	0	0	0	0.085655	1	6369	6369		82.75	5.4329	1	1067900			643	4637	384	387	648	648					0.06425725614712974
AEAEKKVQL	9	Unmodified	_AEAEKKVQL_					0	0	0		TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant;ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2922058105469	2	508.292756	1014.57096	-0.57549	-0.00029252	-0.0011208	-5.6968E-07	-0.57661	-0.00029309	508.29269332742774	20.157	0.13552	20.157	20.085	20.221	0					8	4	3	0	0	0	0.10915	1	5590	5590		77.318	15.21	1	177050			644	4637	384	387	649	649					0.06425725614712974
AEAEKKVQL	9	Unmodified	_AEAEKKVQL_					0	0	0		TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant;ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2926330566406	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.397	1	20.397	19.897	20.897	0								0	0	0	0.045272	1	6603	6603		88.177	0.4805	1				645	4637	384	387	650	650					0.06425725614712974
AEAEKKVQL	9	Unmodified	_AEAEKKVQL_					0	0	0		TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant;ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.29266357421875	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.256	1	20.256	19.756	20.756	0								0	0	0	0.31838	1	5661	5661		31.53	0	1				646	4637	384	387	651	651					0.06425725614712974
AEAEKKVQL	9	Unmodified	_AEAEKKVQL_					0	0	0		TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant;ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	TMF1|p.R506I|1|0.23|ENSG00000144747|chr3:69043811-69043811|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2879638671875	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.194	1	20.194	19.694	20.694	0								0	0	0	0.13425	1	5632	5632		63.534	12.341	1				647	4637	384	387	652	652					0.06425725614712974
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.27642822265625	2	472.276575	942.538597	0.2108	9.9558E-05	-0.80498	-0.00038017	-0.59418	-0.00028062	472.27623522655387	36.6	0.3793	36.6	36.496	36.875	0					16	10	2	0	0	0	0.10506	1	13809	13809		78.264	16.156	1	975080			648	6707	385	388	653	653					0.06502938211713172
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2769775390625	2	472.276575	942.538597	-1.4471	-0.00068341	1.163	0.00054926	-0.28405	-0.00013415	472.27720220310744	36.35	0.29666	36.35	36.279	36.576	0					30	16	2	0	0	0	0.15163	1	12310	12310		67.494	8.7117	1	148260			649	6707	385	388	654	654					0.06502938211713172
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.27655029296875	2	472.276575	942.538597	0.58596	0.00027674	-1.2131	-0.00057291	-0.62711	-0.00029617	472.27613438862085	36.681	0.44717	36.681	36.455	36.902	0					23	13	2	0	0	0	0.12834	1	14244	14244		72.879	14.097	1	815020			650	6707	385	388	655	655					0.06502938211713172
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2763366699219	2	472.276575	942.538597	-0.56534	-0.000267	-0.12618	-5.9594E-05	-0.69152	-0.00032659	472.27651111624266	36.537	0.41589	36.537	36.379	36.795	0					13	8	2	0	0	0	0.085655	1	14194	14194		82.75	18.543	1	795440			651	6707	385	388	656	656					0.06502938211713172
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2762145996094	2	472.276575	942.538597	0.61092	0.00028852	-1.6885	-0.00079744	-1.0776	-0.00050891	472.27590845126946	36.521	0.36689	36.521	36.411	36.778	0					12	7	2	0	0	0	0.12834	1	14189	14189		72.879	14.097	1	1166500			652	6707	385	388	657	657					0.06502938211713172
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.233154296875	2	521.231507	1040.44846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.537	1	41.537	41.037	42.037	0								0	0	0	0.27939	1	13790	13790		39.253	10.083	1			+	653	11643	386	389	658	658					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2313842773438	2	521.231507	1040.44846	1.7288	0.00090109	-1.2078	-0.00062956	0.52094	0.00027153	521.2307047475178	41.734	0.19705	41.734	41.631	41.828	0					13	8	2	0	0	0	0.087861	1	16392	16392		82.241	7.9855	1	121060		+	654	11643	386	389	659	659					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2317504882812	2	521.231507	1040.44846	0.3749	0.00019541	0.38702	0.00020172	0.76191	0.00039713	521.2316114753073	41.683	0.1615	41.683	41.606	41.768	0					7	4	2	0	0	0	0.10915	1	16593	16593		77.318	24.381	1	115050		+	655	11643	386	389	660	660					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2321166992188	2	521.231507	1040.44846	1.6237	0.00084635	-0.63478	-0.00033087	0.98896	0.00051548	521.231185199298	41.681	0.33234	41.681	41.557	41.889	0					15	9	2	0	0	0	0.11898	1	16587	16587		75.043	20.267	1	227100		+	656	11643	386	389	661	661					-0.07014479179019872
AEAGGLLK	8	Unmodified	_AEAGGLLK_					0	0	0		ENST00000553925.1_1_14:39534005-39536406:-|nuORF	ENST00000553925.1_1_14:39534005-39536406:-|nuORF	ENST00000553925.1_1_14:39534005-39536406:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.725341796875	2	379.723978	757.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.069	1	39.069	38.569	39.569	0								0	0	0	1.7419	1	15411	15411		20.482	0	1				657	10640	387	390	662	662					0.04498441805958464
AEAHWAVR	8	Unmodified	_AEAHWAVR_					0	0	0		nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000597559.5_1_19:16547732-16582756:-|nuORF;EPS15L1|p.P231Hfs*37|1|0.27|ENSG00000127527|chr19:16425183-16425183|G/-|frameshift_variant	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.24261474609375	2	470.243401	938.472249	-1.2982	-0.00061047	-1.7974	-0.00084521	-3.0956	-0.0014557	470.2430862438502	20.68	0.23724	20.68	20.555	20.793	0					19	7	4	0	0	0	0.65276	1	5828	5828		40.573	6.4001	1	202090			658	3509	388	391	663	663					0.0005516716032616387
AEAIIHGL	8	Unmodified	_AEAIIHGL_					0	0	0		ENST00000583350.1_1_18:14377547-14378720:-|nuORF;nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1	ENST00000583350.1_1_18:14377547-14378720:-|nuORF	ENST00000583350.1_1_18:14377547-14378720:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.2369079589844	2	412.237253	822.459953	1.0172	0.00041933	-1.6056	-0.00066187	-0.58835	-0.00024254	412.2365095839375	36.043	0.24126	36.043	35.942	36.183	0					11	6	2	0	0	0	0.36926	1	13564	13564		74.517	19.752	1	153010			659	4789	389	392	664	664					0.04162130697284283
AEAIIHGL	8	Unmodified	_AEAIIHGL_					0	0	0		ENST00000583350.1_1_18:14377547-14378720:-|nuORF;nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1	ENST00000583350.1_1_18:14377547-14378720:-|nuORF	ENST00000583350.1_1_18:14377547-14378720:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.237548828125	2	412.237253	822.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.02	1	36.02	35.52	36.52	0								0	0	0	1.7419	1	14001	14001		71.378	19.079	1				660	4789	389	392	665	665					0.04162130697284283
AEAIIHGL	8	Unmodified	_AEAIIHGL_					0	0	0		ENST00000583350.1_1_18:14377547-14378720:-|nuORF;nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1	ENST00000583350.1_1_18:14377547-14378720:-|nuORF	ENST00000583350.1_1_18:14377547-14378720:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.237060546875	2	412.237253	822.459953	-0.43806	-0.00018058	0.4819	0.00019866	0.043846	1.8075E-05	412.2374757702211	35.94	0.2656	35.94	35.833	36.098	0					12	5	3	0	0	0	0.4723	1	13912	13912		62.978	10.679	1	112620			661	4789	389	392	666	666					0.04162130697284283
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2848815917969	2	464.284734	926.554916	0.57386	0.00026644	-1.2091	-0.00056136	-0.63523	-0.00029493	464.2841029634099	37.144	0.19872	37.144	37.069	37.268	0					11	5	3	0	0	0	0.15163	1	14053	14053		67.494	18.052	1	258540			662	5782	390	393	667	667					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2845458984375	2	464.284734	926.554916	0.72605	0.00033709	-1.5894	-0.00073793	-0.86334	-0.00040084	464.28393480366043	37.06	0.45762	37.06	36.713	37.171	0					17	9	3	0	0	0	0.15163	1	14449	14449		67.494	5.3863	1	398990			663	5782	390	393	668	668					0.08870064168456793
AEAITSQKL	9	Unmodified	_AEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.77154541015625	2	480.771657	959.528761	0.071164	3.4214E-05	0.54151	0.00026034	0.61267	0.00029455	480.77183313236213	26.708	0.13794	26.708	26.612	26.75	0					7	4	2	0	0	0	0.13726	1	8143	8143		70.816	12.586	1	73286			664	7654	391	394	669	669					0.04737750206345481
AEAITSQKL	9	Unmodified	_AEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7713317871094	2	480.771657	959.528761	-0.15691	-7.5439E-05	0.19189	9.2256E-05	0.034979	1.6817E-05	480.771718762663	26.964	0.29335	26.964	26.875	27.169	0					12	7	3	0	0	0	0.047855	1	9357	9357		96.034	18.716	1	539200			665	7654	391	394	670	670					0.04737750206345481
AEAITSQKL	9	Unmodified	_AEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7710876464844	2	480.771657	959.528761	-1.3698	-0.00065858	0.7299	0.00035091	-0.63995	-0.00030767	480.77187348006265	26.709	0.14115	26.709	26.658	26.8	0					8	5	2	0	0	0	0.3269	1	8435	8435		47.96	10.148	1	113510			666	7654	391	394	671	671					0.04737750206345481
AEAITSQKL	9	Unmodified	_AEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7713623046875	2	480.771657	959.528761	0.67969	0.00032678	-2.1619	-0.0010394	-1.4822	-0.0007126	480.7702631674392	26.969	0.60939	26.969	26.611	27.22	0					22	12	4	0	0	0	0.020674	1	9728	9728		120.87	13.861	1	817750			667	7654	391	394	672	672					0.04737750206345481
AEAITSQKL	9	Unmodified	_AEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7712707519531	2	480.771657	959.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.781	1	26.781	26.281	27.281	0								0	0	0	0.015064	1	8673	8673		104.06	13.687	1				668	7654	391	394	673	673					0.04737750206345481
AEAITSQKL	9	Unmodified	_AEAITSQKL_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.77154541015625	2	480.771657	959.528761	2.3302	0.0011203	-2.5429	-0.0012226	-0.21266	-0.00010224	480.7704345328387	26.928	0.46519	26.928	26.722	27.187	0					14	9	2	0	0	0	0.032383	1	9586	9586		106.68	18.987	1	832670			669	7654	391	394	674	674					0.04737750206345481
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8031005859375	2	532.802957	1063.59136	1.0206	0.00054375	0.48049	0.00025601	1.501	0.00079976	532.8033462110507	26.257	0.20873	26.257	26.162	26.371	0					9	6	2	0	0	0	0.21263	1	7946	7946		60.118	5.3419	1	184160			670	3867	392	395	675	675					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.804443359375	2	532.802957	1063.59136	5.1066	0.0027208	-2.5465	-0.0013568	2.5601	0.001364	532.8013898381271	26.25	0.15244	26.25	26.185	26.337	0					6	4	2	0	0	0	0.0792	1	8242	8242		84.916	16.129	1	82319			671	3867	392	395	676	676					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.803466796875	2	532.802957	1063.59136	1.0707	0.00057046	-0.17599	-9.3766E-05	0.8947	0.0004767	532.802893257139	26.535	0.26754	26.535	26.426	26.694	0					12	5	3	0	0	0	0.023928	1	9498	9498		115.49	22.299	1	773330			672	3867	392	395	677	677					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8043212890625	2	532.802957	1063.59136	1.9986	0.0010648	0.21212	0.00011302	2.2107	0.0011779	532.8030680070526	26.311	0.23576	26.311	26.259	26.495	0					6	5	2	0	0	0	0.10915	1	8465	8465		77.318	3.0625	1	80773			673	3867	392	395	678	678					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8031616210938	2	532.802957	1063.59136	0.71749	0.00038228	0.073098	3.8947E-05	0.79058	0.00042123	532.8029849383456	26.456	0.47389	26.456	26.298	26.772	0					21	9	4	0	0	0	0.07136	1	9361	9361		87.696	7.9839	1	1498400			674	3867	392	395	679	679					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8033447265625	2	532.802957	1063.59136	1.7634	0.00093953	-0.8898	-0.00047409	0.87357	0.00046544	532.802695562479	26.483	0.42317	26.483	26.282	26.705	0					19	8	4	0	0	0	0.12834	1	9357	9357		72.879	1.0018	1	1073000			675	3867	392	395	680	680					0.062108962745242025
AEAKFREIA	9	Unmodified	_AEAKFREIA_					0	0	0		ENST00000465725.1_1_7:108212170-108215134:+|nuORF;ENST00000491582.1_1_7:108210452-108212392:+|nuORF;ENSG00000128590|ENST00000249356|DNAJB9	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7869262695312	2	517.785099	1033.55564	3.3345	0.0017266	-0.25899	-0.0001341	3.0756	0.0015925	517.7850901163522	24.504	0.69744	24.504	24.347	25.044	0					35	14	4	0	0	0	0.10915	1	8472	8472		60.972	20.914	1	31654000			676	3550	393	396	681	681					0.04020858817534645
AEAKKIERL	9	Unmodified	_AEAKKIERL_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3224487304688	2	529.321848	1056.62914	0.48174	0.00025499	0.75177	0.00039793	1.2335	0.00065292	529.3222607681412	18.035	0.18806	18.035	17.945	18.133	0					9	5	2	0	0	0	0.11898	1	4428	4428		75.043	5.4157	1	455760			677	6965	394	397	682	682					0.10309407260001535
AEAKKIERL	9	Unmodified	_AEAKKIERL_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3220825195312	2	529.321848	1056.62914	0.11184	5.9202E-05	0.45565	0.00024119	0.5675	0.00030039	529.3220330454193	18.378	0.31805	18.378	18.282	18.6	0					12	7	2	0	0	0	0.015496	1	5355	5355		129.42	5.3412	1	2013000			678	6965	394	397	683	683					0.10309407260001535
AEAKQVKNK	9	Unmodified	_AEAKQVKNK_					0	0	0			REV__nc|ENSG00000170370|Q04743-2|EMX2	REV__nc|ENSG00000170370|Q04743-2|EMX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2981872558594	2	508.298373	1014.58219	0.89997	0.00045745	-1.3935	-0.00070832	-0.49354	-0.00025087	508.297614335148	19.787	0.18034	19.787	19.706	19.886	0					9	4	3	0	0	0	0.13267	1	6041	6041		71.877	5.4482	1	1629900	+		679	21116	395	398	684	684					0.07548547708859132
AEAKVSVRL	9	Unmodified	_AEAKVSVRL_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7948303222656	2	486.795466	971.57638	-1.2432	-0.00060517	0.95595	0.00046535	-0.28723	-0.00013982	486.79572108885446	36.078	0.22062	36.078	35.987	36.208	0					16	9	3	0	0	0	0.46194	1	12219	12219		36.447	1.2947	1	156770	+		680	13219	396	399	685	685					0.08945449197187827
AEALAAGADT	10	Unmodified	_AEALAAGADT_					0	0	0		UGGT1|p.I848T|1|0.29|ENSG00000136731|chr2:128159701-128159701|T/C|missense_variant	UGGT1|p.I848T|1|0.29|ENSG00000136731|chr2:128159701-128159701|T/C|missense_variant	UGGT1|p.I848T|1|0.29|ENSG00000136731|chr2:128159701-128159701|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.2169189453125	2	445.216714	888.418876	-0.46648	-0.00020768	0.91446	0.00040713	0.44798	0.00019945	445.2172263391019	31.892	0.41252	31.892	31.707	32.119	0					21	12	2	0	0	0	0.49411	1	10995	10995		45.972	10.354	1	102300			681	23087	397	400	686	686					-0.029796751328490245
AEALAAGADT	10	Unmodified	_AEALAAGADT_					0	0	0		UGGT1|p.I848T|1|0.29|ENSG00000136731|chr2:128159701-128159701|T/C|missense_variant	UGGT1|p.I848T|1|0.29|ENSG00000136731|chr2:128159701-128159701|T/C|missense_variant	UGGT1|p.I848T|1|0.29|ENSG00000136731|chr2:128159701-128159701|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2170715332031	2	445.216714	888.418876	-0.46209	-0.00020573	0.41352	0.0001841	-0.048577	-2.1627E-05	445.217232324226	32.066	0.46864	32.066	31.869	32.338	0					23	9	3	0	0	0	0.47859	1	12020	12020		47.657	6.8792	1	341560			682	23087	397	400	687	687					-0.029796751328490245
AEALARARVI	10	Unmodified	_AEALARARVI_					0	0	0		ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.2220458984375	3	357.220735	1068.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.097	1	31.097	30.597	31.597	0								0	0	0	0.4044	1	11285	11285		29.17	1.2878	1				683	10178	398	401	688	688					0.10880229354143012
AEALATHIL	9	Unmodified	_AEALATHIL_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7679138183594	2	469.768917	937.523281	0.61665	0.00028968	-4.2938	-0.0020171	-3.6771	-0.0017274	469.7669331978083	37.722	0.19846	37.722	37.62	37.819	0					11	6	2	0	0	0	0.047412	1	14764	14764		96.19	16.739	1	239080			684	107	399	402	689	689					0.052020714145328384
AEALEKKFNF	10	Unmodified	_AEALEKKFNF_					0	0	0		tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.54888916015625	3	399.548518	1195.62372	0.59645	0.00023831	-0.43797	-0.00017499	0.15848	6.3322E-05	399.5485940032199	21.651	0.20716	21.651	21.544	21.751	0					11	6	3	0	0	0	0.66699	1	6006	6006		26.063	1.8316	1	107740			685	22709	400	403	690	690					0.033736836775233314
AEALPKQSV	9	Unmodified	_AEALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7656555175781	2	471.766374	941.518196	-0.016661	-7.8602E-06	-0.82727	-0.00039028	-0.84393	-0.00039814	471.76594061655095	23.987	0.20454	23.987	23.87	24.075	0					11	6	3	0	0	0	0.15163	1	7009	7009		67.494	1.6905	1	192630			686	4688	401	404	691	691					0.04509767551905952
AEALPKQSV	9	Unmodified	_AEALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.76641845703125	2	471.766374	941.518196	-2.391	-0.001128	1.9566	0.00092308	-0.43435	-0.00020491	471.76730113072426	24.059	0.34419	24.059	23.828	24.172	0					14	8	2	0	0	0	0.24334	1	7387	7387		56.434	6.9922	1	608260			687	4688	401	404	692	692					0.04509767551905952
AEALSHHCL	9	Unmodified	_AEALSHHCL_					0	0	0		ENST00000558890.5_1_15:99872165-99903471:+|nuORF	ENST00000558890.5_1_15:99872165-99903471:+|nuORF	ENST00000558890.5_1_15:99872165-99903471:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.73712158203125	2	490.734551	979.45455	2.6776	0.001314	3.0546	0.001499	5.7322	0.002813	490.73636677803705	21.92	0.46839	21.92	21.704	22.173	0					28	9	4	0	0	0	0.45358	1	7198	7198		37.159	6.6555	1	966970			688	10676	402	405	693	693					-0.035999161568497584
AEALTGLA	8	Unmodified	_AEALTGLA_					0	0	0			REV__ENSG00000160182|ENST00000291527|TFF1	REV__ENSG00000160182|ENST00000291527|TFF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.20843505859375	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.818	1	32.818	32.318	33.318	0								0	0	0	1.7419	1	10976	10976		35.201	0	1		+		689	15738	403	406	694	694					0.01934449052009768
AEALTQRL	8	Unmodified	_AEALTQRL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R1457Q|1|0.72|ENSG00000105357|chr19:50281796-50281796|G/A|missense_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2583312988281	2	451.258717	900.50288	-0.31526	-0.00014227	-0.34268	-0.00015464	-0.65795	-0.0002969	451.25838780082114	29.19	0.1466	29.19	29.089	29.236	0					8	5	2	0	0	0	0.42778	1	9193	9193		67.494	2.0283	1	110740			690	2348	404	407	695	695					0.048649007547169276
AEALTQRL	8	Unmodified	_AEALTQRL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R1457Q|1|0.72|ENSG00000105357|chr19:50281796-50281796|G/A|missense_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2589416503906	2	451.258717	900.50288	-0.3348	-0.00015108	0.25758	0.00011624	-0.077224	-3.4848E-05	451.25870620911843	29.454	0.15705	29.454	29.396	29.553	0					5	3	2	0	0	0	0.34592	1	10918	10918		77.318	2.2743	1	144670			691	2348	404	407	696	696					0.048649007547169276
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2638244628906	2	444.263468	886.512382	0.21938	9.7461E-05	0.41686	0.0001852	0.63624	0.00028266	444.26354138057735	29.635	0.12483	29.635	29.55	29.675	0					7	4	2	0	0	0	0.13726	1	9377	9377		70.816	12.586	1	57888			692	7433	405	408	697	697					0.06458669040239329
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2630920410156	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.925	1	29.925	29.425	30.425	0								0	0	0	0.045272	1	10737	10737		88.177	13.134	1				693	7433	405	408	698	698					0.06458669040239329
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2629089355469	2	444.263468	886.512382	-1.1585	-0.00051467	0.83405	0.00037054	-0.32444	-0.00014414	444.26364688051024	29.651	0.088341	29.651	29.592	29.68	0					6	3	2	0	0	0	0.19952	1	9668	9668		61.691	12.155	1	84593			694	7433	405	408	699	699					0.06458669040239329
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2635803222656	2	444.263468	886.512382	0.53981	0.00023982	-0.25761	-0.00011445	0.2822	0.00012537	444.26332391305635	29.907	0.20734	29.907	29.801	30.008	0					9	4	3	0	0	0	0.10506	1	11138	11138		78.264	12.798	1	484120			695	7433	405	408	700	700					0.06458669040239329
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.26385498046875	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.718	1	29.718	29.218	30.218	0								0	0	0	0.11736	1	10033	10033		67.494	1.0644	1				696	7433	405	408	701	701					0.06458669040239329
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2633361816406	2	444.263468	886.512382	0.78025	0.00034664	-0.81671	-0.00036283	-0.036458	-1.6197E-05	444.2630251306532	29.838	0.21588	29.838	29.731	29.947	0					7	4	2	0	0	0	0.070005	1	10992	10992		88.177	13.134	1	482370			697	7433	405	408	702	702					0.06458669040239329
AEAPLTPSLV	10	Unmodified	_AEAPLTPSLV_					0	0	0			REV__nc|ENSG00000272886|Q9NPI6-2|DCP1A	REV__nc|ENSG00000272886|Q9NPI6-2|DCP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2822570800781	2	499.281857	996.549162	-0.34156	-0.00017054	1.7209	0.00085922	1.3794	0.00068869	499.28256084966176	29.189	0.12018	29.189	29.12	29.24	0					6	3	2	0	0	0	0.56063	1	9794	9794		51.335	15.717	1	79894	+		698	17815	406	409	703	703					0.05074920866138655
AEAPSQVRL	9	Unmodified	_AEAPSQVRL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7696533203125	2	485.769448	969.524344	-0.24669	-0.00011984	0.25103	0.00012194	0.0043337	2.1052E-06	485.7695099220736	28.643	0.16194	28.643	28.56	28.722	0					8	4	2	0	0	0	0.22837	1	9544	9544		58.23	3.4536	1	98962			699	1155	407	410	704	704					0.03836285783427229
AEARAGHAG	9	Unmodified	_AEARAGHAG_					0	0	0		ENST00000457671.1_1_1:161860623-161860854:+|nuORF	ENST00000457671.1_1_1:161860623-161860854:+|nuORF	ENST00000457671.1_1_1:161860623-161860854:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.2113037109375	2	420.209558	838.404563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.391	1	18.391	17.891	18.891	0								0	0	0	0.31623	1	5371	5371		31.955	2.8053	1				700	9699	408	411	705	705					-0.02110282770468075
AEAREGPD	8	Unmodified	_AEAREGPD_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.69287109375	2	422.693407	843.37226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.618	1	42.618	42.118	43.118	0								0	0	0	1.7419	1	16718	16718		33.516	1.5607	1		+		701	14944	409	412	706	706					-0.05569114964134769
AEARGRVRAL	10	Unmodified	_AEARGRVRAL_					0	0	0		ENSG00000171695|ENST00000302096|LKAAEAR1;nc|ENSG00000171695|Q8TD35-2|LKAAEAR1	ENSG00000171695|ENST00000302096|LKAAEAR1	ENSG00000171695|ENST00000302096|LKAAEAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.888427734375	3	366.887868	1097.64177	0.47602	0.00017465	1.7362	0.000637	2.2123	0.00081165	366.888501827925	21.097	0.29364	21.097	20.852	21.145	0					17	8	3	0	0	0	0.69544	1	5722	5722		22.58	1.6327	1	125080			702	6312	410	413	707	707					0.09685863442905429
AEARSHNAME	10	Unmodified	_AEARSHNAME_					0	0	0			REV__CON__Q9DCV7	REV__CON__Q9DCV7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.248291015625	2	558.248554	1114.48256	0.53344	0.00029779	0.53075	0.00029629	1.0642	0.00059408	558.2487174118132	33.617	1.2882	33.617	33.443	34.731	0					65	33	4	0	0	0	0.55603	1	12577	12577		39.253	3.6345	1	4006500	+	+	703	12619	411	414	708	708					-0.07010637967391631
AEARVVQG	8	Unmodified	_AEARVVQG_					0	0	0			REV__FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant	REV__FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.2298583984375	2	415.229959	828.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.212	1	21.212	20.712	21.712	0								0	0	0	1.7419	1	6999	6999		42.396	1.618	1		+		704	15767	412	415	709	709					0.024280585491510465
AEASLFRPY	9	Unmodified	_AEASLFRPY_					0	0	0			REV__ENST00000585839.5_1_19:14580313-14582593:+|nuORF	REV__ENST00000585839.5_1_19:14580313-14582593:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.272216796875	2	527.271824	1052.5291	0.6559	0.00034584	-1.452	-0.00076562	-0.79614	-0.00041978	527.2717488777878	31.114	0.21453	31.114	31.027	31.241	0					10	4	3	0	0	0	0.24095	1	11596	11596		56.721	0.28726	1	258780	+		705	20477	413	416	710	710					0.0049316992619878874
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2549133300781	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.349	1	35.349	34.849	35.849	0								0	0	0	0.0016356	1	13249	13249		123.21	38.293	1				706	1278	414	417	711	711					0.018710054429334377
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2545471191406	2	475.254785	948.495018	-1.5622	-0.00074242	0.7989	0.00037968	-0.76326	-0.00036274	475.2556298196254	35.128	0.22692	35.128	35.066	35.293	0					22	10	3	0	0	0	0.13726	1	11876	11876		70.816	16.04	1	183050			707	1278	414	417	712	712					0.018710054429334377
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.25494384765625	2	475.254785	948.495018	0.6208	0.00029504	-0.43471	-0.0002066	0.18608	8.8437E-05	475.2545220611714	35.356	0.43416	35.356	35.281	35.716	0					33	12	4	0	0	0	0.037712	1	13689	13689		101.46	33.966	1	824000			708	1278	414	417	713	713					0.018710054429334377
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2543640136719	2	475.254785	948.495018	-0.4256	-0.00020227	-0.42119	-0.00020017	-0.84679	-0.00040244	475.2546717850274	35.118	0.20454	35.118	35.055	35.26	0					12	6	2	0	0	0	0.25761	1	12499	12499		54.722	7.065	1	117450			709	1278	414	417	714	714					0.018710054429334377
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2561340332031	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.091	1	35.091	34.591	35.591	0								0	0	0	0.095784	1	12473	12473		72.879	21.544	1				710	1278	414	417	715	715					0.018710054429334377
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.25439453125	2	475.254785	948.495018	0.74114	0.00035223	-2.8415	-0.0013505	-2.1004	-0.00099822	475.25419279543144	35.271	0.37284	35.271	35.162	35.535	0					21	7	4	0	0	0	0.026848	1	13613	13613		112.11	32.395	1	806350			711	1278	414	417	716	716					0.018710054429334377
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2549133300781	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.276	1	35.276	34.776	35.776	0								0	0	0	0.00014293	1	13604	13604		134.77	52.461	1				712	1278	414	417	717	717					0.018710054429334377
AEATICTKLMK	11	Carbamidomethyl (C),Oxidation (M)	_AEATIC(Carbamidomethyl (C))TKLM(Oxidation (M))K_	AEATIC(1)TKLMK	AEATICTKLM(1)K	AEATIC(84)TKLMK	AEATICTKLM(84)K	0	1	1		nc|ENSG00000100614|P35813-3|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	641.328369140625	2	641.330698	1280.64684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.52	1	38.52	38.02	39.02	0								0	0	0	0.064391	1	12991	12991		83.647	13.248	1				713	11460	415	418	718	718	452	444			0.017746184083080152
AEAVAISKE	9	Unmodified	_AEAVAISKE_					0	0	0			REV__nc|ENSG00000134602|Q9P289-2|STK26	REV__nc|ENSG00000134602|Q9P289-2|STK26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.24945068359375	2	459.250557	916.486562	-0.44643	-0.00020503	-1.3839	-0.00063555	-1.8303	-0.00084057	459.25040424983735	23.016	0.51362	23.016	22.839	23.352	0					25	10	4	0	0	0	0.099922	1	7792	7792		79.451	18.479	1	1220000	+		714	14755	416	419	719	719					0.024977747979505693
AEAVKFVAENP	11	Unmodified	_AEAVKFVAENP_					0	0	0		tr|U7SZP6|U7SZP6_FUSNUEthanolamineutilizationproteinEutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00823PE=4SV=1	tr|U7SZP6|U7SZP6_FUSNUEthanolamineutilizationproteinEutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00823PE=4SV=1	tr|U7SZP6|U7SZP6_FUSNUEthanolamineutilizationproteinEutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00823PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2082824707031	3	392.208273	1173.60299	0.39235	0.00015388	-0.41428	-0.00016248	-0.021931	-8.6015E-06	392.2080929188263	27.906	0.73446	27.906	27.798	28.532	0					33	15	4	0	0	0	0.27467	1	10173	10173		49.466	0	1	2682400			715	22894	417	420	720	720					0.023130932978574492
AEAVLTAPL	9	Unmodified	_AEAVLTAPL_					0	0	0		ENST00000333046.8_3_9:140093874-140093928:-|nuORF	ENST00000333046.8_3_9:140093874-140093928:-|nuORF	ENST00000333046.8_3_9:140093874-140093928:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.75775146484375	2	442.758018	883.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.004	1	41.004	40.504	41.504	0								0	0	0	0.29774	1	15594	15594		35.618	5.1146	1				716	8685	418	421	721	721					0.055072666659384595
AEAVQKFFL	9	Unmodified	_AEAVQKFFL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.793212890625	2	526.792392	1051.57023	1.7617	0.00092807	-1.2005	-0.00063242	0.56121	0.00029564	526.7916315406438	45.775	0.17912	45.775	45.693	45.872	0					14	10	2	0	0	0	0.19605	1	17675	17675		62.107	14.148	1	52813			717	6447	419	422	722	722					0.046509309656585174
AEAVQKFFL	9	Unmodified	_AEAVQKFFL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7918090820312	2	526.792392	1051.57023	1.6281	0.00085765	-0.93039	-0.00049012	0.69767	0.00036753	526.7917625982616	45.729	0.2065	45.729	45.646	45.852	0					18	8	3	0	0	0	0.19605	1	18305	18305		62.107	21.329	1	191320			718	6447	419	422	723	723					0.046509309656585174
AEAVRTTL	8	Unmodified	_AEAVRTTL_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;ENST00000464397.1_1_2:73461506-73466971:+|nuORF;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7453308105469	2	430.745442	859.476331	0.78144	0.0003366	0.059636	2.5688E-05	0.84107	0.00036229	430.7449969235757	25.379	0.42712	25.379	25.289	25.716	0					14	10	2	0	0	0	0.57171	1	8678	8678		52.937	3.4952	1	444960			719	4007	420	423	724	724					0.04097211863393113
AEAVRTTL	8	Unmodified	_AEAVRTTL_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;ENST00000464397.1_1_2:73461506-73466971:+|nuORF;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7452697753906	2	430.745442	859.476331	-0.34631	-0.00014917	0.54722	0.00023571	0.20091	8.6543E-05	430.7455319561799	25.2	0.094618	25.2	25.128	25.222	0					4	2	2	0	0	0	0.60692	1	7979	7979		47.96	7.1814	1	35432			720	4007	420	423	725	725					0.04097211863393113
AEAVRTTL	8	Unmodified	_AEAVRTTL_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;ENST00000464397.1_1_2:73461506-73466971:+|nuORF;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.74530029296875	2	430.745442	859.476331	0.96746	0.00041673	-1.2465	-0.00053694	-0.27906	-0.00012021	430.7450058225271	25.307	0.16781	25.307	25.196	25.364	0					8	3	3	0	0	0	0.27565	1	8858	8858		90.601	8.3603	1	420930			721	4007	420	423	726	726					0.04097211863393113
AEAVSRVL	8	Unmodified	_AEAVSRVL_					0	0	0		ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7475891113281	2	422.747985	843.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.869	1	27.869	27.369	28.369	0								0	0	0	1.7419	1	8643	8643		71.877	7.6702	1				722	6671	421	424	727	727					0.05341515726013313
AEAVSRVL	8	Unmodified	_AEAVSRVL_					0	0	0		ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7476501464844	2	422.747985	843.481417	-0.34509	-0.00014589	-0.43205	-0.00018265	-0.77714	-0.00032854	422.7478268550705	28.118	0.36543	28.118	28.01	28.375	0					12	7	3	0	0	0	0.3049	1	10160	10160		82.241	7.9855	1	588210			723	6671	421	424	728	728					0.05341515726013313
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2610778808594	2	476.260925	950.507297	-0.15761	-7.5064E-05	0.085827	4.0876E-05	-0.071784	-3.4188E-05	476.2606811335996	28.595	0.22641	28.595	28.434	28.661	0					21	10	3	0	0	0	0.14578	1	8926	8926		68.846	5.3123	1	268820			724	2601	422	425	729	729					0.03006365177623138
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2607421875	2	476.260925	950.507297	-0.3796	-0.00018079	0.59313	0.00028248	0.21353	0.0001017	476.2608746954743	28.841	0.29724	28.841	28.671	28.968	0					21	7	4	0	0	0	0.035106	1	10228	10228		104.01	15.837	1	1597300			725	2601	422	425	730	730					0.03006365177623138
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.26104736328125	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.561	1	28.561	28.061	29.061	0								0	0	0	0.077333	1	9222	9222		78.264	6.3863	1				726	2601	422	425	731	731					0.03006365177623138
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2607421875	2	476.260925	950.507297	0.63135	0.00030069	-0.31891	-0.00015189	0.31243	0.0001488	476.26044201672755	28.854	0.54956	28.854	28.661	29.211	0					29	11	4	0	0	0	0.040209	2	10613	10593;10613		99.013	15.366	1	2496800			727	2601	422	425	732;733	733					0.03006365177623138
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2606506347656	2	476.260925	950.507297	-0.37743	-0.00017975	1.2268	0.0005843	0.84942	0.00040455	476.2610662975962	28.59	0.24497	28.59	28.477	28.722	0					15	6	3	0	0	0	0.095583	1	9526	9526		80.455	9.1589	1	114470			728	2601	422	425	734	734					0.03006365177623138
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2606201171875	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.644	1	28.644	28.144	29.144	0								0	0	0	0.043554	1	9535	9535		89.029	3.868	1				729	2601	422	425	735	735					0.03006365177623138
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2607727050781	2	476.260925	950.507297	2.273	0.0010825	-1.6829	-0.00080149	0.59008	0.00028103	476.2597286403819	28.772	0.46826	28.772	28.624	29.093	0					25	9	4	0	0	0	0.029571	2	10478	10460;10478		109.44	24.278	1	2800100			730	2601	422	425	736;737	737					0.03006365177623138
AEAYLGKTVT	10	Unmodified	_AEAYLGKTVT_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7857666015625	2	526.784764	1051.55498	0.60337	0.00031785	0.56096	0.0002955	1.1643	0.00061335	526.785900892035	27.611	0.064613	27.611	27.577	27.642	0					4	2	2	0	0	0	0.58308	1	8538	8538		36.318	4.7878	1	35642			731	2601	423	426	738	738					0.031260193778280154
AEAYVRKY	8	Unmodified	_AEAYVRKY_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2663879394531	2	500.266542	998.51853	0.89908	0.00044978	-1.0687	-0.00053465	-0.16964	-8.4866E-05	500.2660183092875	34.732	0.54332	34.732	34.495	35.038	0					25	15	3	0	0	0	0.37378	1	13416	13416		73.975	19.198	1	661600			732	22900	424	427	739	739					0.01921187271761937
AECLNWQL	8	Unmodified	_AECLNWQL_					0	0	0			REV__ENST00000437151.1_1_6:87680512-87680560:+|nuORF	REV__ENST00000437151.1_1_6:87680512-87680560:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.73272705078125	2	488.731477	975.448402	-0.023846	-1.1654E-05	1.9879	0.00097154	1.964	0.00095988	488.73244985192684	29.049	0.2213	29.049	28.904	29.125	0					12	8	2	0	0	0	0.66372	1	9116	9116		38.806	2.3594	1	58424	+		733	19212	425	428	740	740					-0.04030434388369031
AEDDFKKVL	9	Unmodified	_AEDDFKKVL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7853393554688	2	532.784764	1063.55498	2.3521	0.0012532	-3.1165	-0.0016604	-0.76437	-0.00040724	532.784008828165	31.291	0.49945	31.291	31.169	31.668	0					23	12	4	0	0	0	0.048471	1	11369	11369		95.815	10.9	1	649550			734	2179	426	429	741	741					0.025740193778119647
AEDDFKKVL	9	Unmodified	_AEDDFKKVL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.525390625	3	355.525602	1063.55498	0.48917	0.00017391	-0.57591	-0.00020475	-0.086736	-3.0837E-05	355.52537478606797	31.289	0.33346	31.289	31.157	31.49	0					24	8	4	0	0	0	0.35045	1	11360	11360		62.107	12.571	1	1711400			735	2179	426	429	742	742					0.025740193778119647
AEDFEWTR	8	Unmodified	_AEDFEWTR_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.23583984375	2	527.235439	1052.45632	0.57765	0.00030456	-0.16763	-8.8382E-05	0.41002	0.00021618	527.2352402656439	23.403	0.22163	23.403	23.324	23.546	0					13	7	3	0	0	0	0.64096	1	6790	6790		42.474	3.6683	1	224760			736	11686	427	430	743	743					-0.06780583867248424
AEDKNRLL	8	Unmodified	_AEDKNRLL_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.771728515625	2	479.769448	957.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.875	1	31.875	31.375	32.375	0								0	0	0	1.7419	1	11647	11647		50.025	0.58299	1				737	7189	428	431	744	744					0.04388285783431911
AEDKPRAQL	9	Unmodified	_AEDKPRAQL_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2801513671875	2	514.28018	1026.54581	1.2716	0.00065396	-0.91367	-0.00046988	0.35794	0.00018408	514.2795874260446	18.91	0.1893	18.91	18.789	18.979	0					14	5	4	0	0	0	0.19605	1	4786	4786		62.107	12.666	1	243190			738	2382	429	432	745	745					0.033596708121422125
AEDKPRAQL	9	Unmodified	_AEDKPRAQL_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.280029296875	2	514.28018	1026.54581	1.1508	0.00059185	-1.4134	-0.0007269	-0.26261	-0.00013505	514.2793522863815	19.223	0.41333	19.223	19.124	19.537	0					17	9	4	0	0	0	0.019882	1	5775	5775		122.18	34.422	1	2786300			739	2382	429	432	746	746					0.033596708121422125
AEDKPRAQL	9	Unmodified	_AEDKPRAQL_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2803344726562	2	514.28018	1026.54581	1.4758	0.00075897	-1.5331	-0.00078846	-0.057345	-2.9491E-05	514.2794936319297	19.137	0.2617	19.137	19.031	19.293	0					11	5	4	0	0	0	0.1424	1	5873	5873		69.628	12.907	1	1212900			740	2382	429	432	747	747					0.033596708121422125
AEDLGLLQF	9	Unmodified	_AEDLGLLQF_					0	0	0		ENSG00000108839|ENST00000251535|ALOX12	ENSG00000108839|ENST00000251535|ALOX12	ENSG00000108839|ENST00000251535|ALOX12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2659912109375	2	503.266207	1004.51786	1.1727	0.00059021	-0.9087	-0.00045732	0.26405	0.00013289	503.26565960056706	46.567	0.22739	46.567	46.395	46.622	0					16	10	2	0	0	0	0.37197	1	18643	18643		44.117	4.864	1	49344			741	2552	430	433	748	748					0.015783478320599897
AEDPSKSYVKL	11	Unmodified	_AEDPSKSYVKL_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.8869323730469	3	412.887199	1235.63977	-0.42192	-0.00017421	0.027849	1.1498E-05	-0.39407	-0.00016271	412.8870713424563	29.173	0.36516	29.173	28.959	29.324	0					17	7	3	0	0	0	0.64323	1	10666	10666		33.039	3.4886	1	253670			742	9701	431	434	749	749					0.03137345123764135
AEEAARLSV	9	Unmodified	_AEEAARLSV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2536926269531	2	473.253631	944.49271	-1.5315	-0.00072481	0.397	0.00018788	-1.1345	-0.00053693	473.25401598524735	27.841	0.12074	27.841	27.762	27.883	0					7	4	2	0	0	0	0.19952	1	8916	8916		61.691	6.1871	1	55463			743	6707	432	435	750	750					0.01824293029483215
AEEAIKIAR	9	Unmodified	_AEEAIKIAR_					0	0	0		tr|U7SK63|U7SK63_FUSNUThiazolesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiGPE=3SV=1	tr|U7SK63|U7SK63_FUSNUThiazolesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiGPE=3SV=1	tr|U7SK63|U7SK63_FUSNUThiazolesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiGPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7932434082031	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.687	1	25.687	25.187	26.187	0								0	0	0	0.20989	1	8022	8022		49.536	6.6718	1				744	22621	433	436	751	751					0.07149145334562945
AEEAMKAL	8	Unmodified	_AEEAMKAL_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.720458984375	2	431.720578	861.426604	0.75692	0.00032678	-1.1185	-0.00048286	-0.36154	-0.00015608	431.7201061595872	27.267	0.26266	27.267	27.169	27.431	0					10	6	3	0	0	0	0.25873	1	9513	9513		96.19	9.2558	1	227030			745	5378	434	437	752	752					-0.009652391369286306
AEEAMKAL	8	Unmodified	_AEEAMKAL_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7203674316406	2	431.720578	861.426604	-0.47267	-0.00020406	-0.049642	-2.1431E-05	-0.52232	-0.00022549	431.72062428480166	27.213	0.16868	27.213	27.103	27.272	0					8	3	3	0	0	0	0.28427	1	9727	9727		87.754	13.238	1	187670			746	5378	434	437	753	753					-0.009652391369286306
AEEAPTHTL	9	Unmodified	_AEEAPTHTL_					0	0	0			REV__ENST00000572440.1_1_17:44055640-44055811:+|nuORF	REV__ENST00000572440.1_1_17:44055640-44055811:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7375793457031	2	484.737814	967.461075	0.66233	0.00032106	-1.1083	-0.00053725	-0.446	-0.00021619	484.7371718219146	28.871	0.54937	28.871	28.613	29.162	0					18	11	2	0	0	0	0.25109	1	10614	10614		55.504	0.72789	1	1054200	+		747	20389	435	438	754	754					-0.023956997244795275
AEEEHLEQV	9	Unmodified	_AEEEHLEQV_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.83428955078125	3	361.836616	1082.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.044	1	36.044	35.544	36.544	0								0	0	0	0.29774	1	12877	12877		35.618	1.4457	1		+		748	14825	436	439	755	755					-0.04992635903931841
AEEKAAVL	8	Unmodified	_AEEKAAVL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.7345886230469	2	415.734543	829.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.468	1	23.468	22.968	23.968	0								0	0	0	1.7419	1	7962	7962		64.207	0.901	1				749	2348	437	440	756	756					0.03298407114800739
AEEKHLHVL	9	Unmodified	_AEEKHLHVL_					0	0	0		ENST00000553816.5_1_14:68151682-68162420:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11	ENST00000553816.5_1_14:68151682-68162420:-|nuORF	ENST00000553816.5_1_14:68151682-68162420:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.2012939453125	3	359.201341	1074.58219	0.72515	0.00026048	-0.72573	-0.00026068	-0.0005749	-2.065E-07	359.20103843790895	21.872	0.35321	21.872	21.779	22.132	0					15	8	4	0	0	0	0.14603	1	7032	7032		68.787	8.6686	1	776730			750	1481	438	441	757	757					0.04788547708835722
AEEKHLHVL	9	Unmodified	_AEEKHLHVL_					0	0	0		ENST00000553816.5_1_14:68151682-68162420:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11	ENST00000553816.5_1_14:68151682-68162420:-|nuORF	ENST00000553816.5_1_14:68151682-68162420:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2012634277344	3	359.201341	1074.58219	1.271	0.00045656	-1.7585	-0.00063164	-0.48741	-0.00017508	359.2007981770331	21.781	0.26603	21.781	21.67	21.936	0					13	5	4	0	0	0	0.14603	1	7153	7153		68.787	23.765	1	979190			751	1481	438	441	758	758					0.04788547708835722
AEEKLNYKM	9	Unmodified	_AEEKLNYKM_					0	0	0		nc|ENSG00000197457|Q9NZ72-2|STMN3;ENSG00000197457|ENST00000370053|STMN3	nc|ENSG00000197457|Q9NZ72-2|STMN3	nc|ENSG00000197457|Q9NZ72-2|STMN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.2845458984375	2	563.284074	1124.5536	1.0016	0.0005642	-3.9271	-0.0022121	-2.9255	-0.0016479	563.2839819970691	34.838	0.65344	34.838	34.294	34.947	0					21	13	3	0	0	0	0.055856	1	13404	13404		93.195	16.421	1	299330			752	7463	439	442	759	759					-0.003699379826002769
AEEKLPMTL	9	Unmodified	_AEEKLPMTL_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2755737304688	2	516.275718	1030.53688	1.4679	0.00075786	-1.5856	-0.00081862	-0.11768	-6.0757E-05	516.2749543459903	40.065	0.3252	40.065	39.929	40.254	0					28	11	4	0	0	0	0.076532	1	15753	15753		85.862	6.4108	1	440420			753	5813	440	443	760	760					0.022835611314576454
AEEKLPMTL	9	Unmodified	_AEEKLPMTL_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.276123046875	2	516.275718	1030.53688	-1.5155	-0.0007824	2.6195	0.0013524	1.104	0.00056998	516.2769260433097	39.834	0.15435	39.834	39.776	39.93	0					10	8	2	0	0	0	0.24334	1	14189	14189		56.434	11.903	1	63044			754	5813	440	443	761	761					0.022835611314576454
AEEKLPMTL	9	Unmodified	_AEEKLPMTL_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.27587890625	2	516.275718	1030.53688	3.2871	0.0016971	-3.7428	-0.0019323	-0.45567	-0.00023525	516.2743177127142	40.042	0.57835	40.042	39.813	40.392	0					26	13	4	0	0	0	0.10506	1	15835	15835		78.264	9.4176	1	862170			755	5813	440	443	762	762					0.022835611314576454
AEEKLTHKM	9	Unmodified	_AEEKLTHKM_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7843627929688	2	543.784241	1085.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.99	1	16.99	16.49	17.49	0								0	0	0	0.11159	1	4713	4713		68.846	5.5399	1				756	3051	441	444	763	763					0.0145748173724769
AEEKPAPQM	9	Unmodified	_AEEKPAPQM_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7417907714844	2	500.742042	999.469531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.129	1	21.129	20.629	21.629	0								0	0	0	0.17415	1	6668	6668		54.722	10.606	1				757	1234	442	445	764	764					-0.030224690795080278
AEELHAFIVA	10	Unmodified	_AEELHAFIVA_					0	0	0			REV__nc|ENSG00000099337|Q9Y257-2|KCNK6	REV__nc|ENSG00000099337|Q9Y257-2|KCNK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.1975402832031	3	367.197596	1098.57096	-0.10862	-3.9886E-05	0.063156	2.3191E-05	-0.045467	-1.6695E-05	367.19760841285654	31.438	0.48136	31.438	31.342	31.823	0					35	12	4	0	0	0	0.68218	1	10996	10996		22.58	3.317	1	2986400	+		758	13493	443	446	765	765					0.025617256147143053
AEELQALNQ	9	Unmodified	_AEELQALNQ_					0	0	0			REV__ENST00000567372.1_1_18:65945123-65945423:-|nuORF	REV__ENST00000567372.1_1_18:65945123-65945423:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2579650878906	2	508.256371	1014.49819	1.314	0.00066786	2.3893	0.0012144	3.7033	0.0018822	508.2575837209521	41.356	0.26109	41.356	41.269	41.53	0					11	6	3	0	0	0	0.34452	1	16458	16458		46.457	1.8173	1	176280	+		759	20353	444	447	766	766					-0.008480281787228705
AEEMIVLIQLK	11	Unmodified	_AEEMIVLIQLK_					0	0	0			REV__ENST00000327040.12_1_8:18730156-18793627:-|nuORF	REV__ENST00000327040.12_1_8:18730156-18793627:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.5853271484375	3	429.584463	1285.73156	-0.51535	-0.00022139	2.6784	0.0011506	2.1631	0.00092923	429.58554474657393	27.972	0.11433	27.972	27.915	28.029	0					4	2	2	0	0	0	0.69983	1	10207	10207		27.644	5.9582	1	111080	+		760	18359	445	448	767	767					0.10012312216576902
AEEPKARVL	9	Unmodified	_AEEPKARVL_					0	0	0		ENST00000468979.1_1_20:3782308-3783795:+|nuORF;ENST00000480816.5_1_20:3781734-3783795:+|nuORF;nc|ENSG00000101224|P30305-3|CDC25B;CDC25B|p.G524Afs*22|1|0.23|ENSG00000101224|chr20:3804645-3804645|A/-|frameshift_variant;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	ENST00000468979.1_1_20:3782308-3783795:+|nuORF	ENST00000468979.1_1_20:3782308-3783795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.79302978515625	2	506.792924	1011.57129	0.15276	7.7417E-05	-0.38938	-0.00019733	-0.23662	-0.00011992	506.7927343346481	21.432	0.36745	21.432	21.324	21.692	0					24	7	4	0	0	0	0.055856	1	7095	7095		93.195	18.94	1	1313800			761	436	446	449	768	768					0.06597145334569632
AEEPKARVL	9	Unmodified	_AEEPKARVL_					0	0	0		ENST00000468979.1_1_20:3782308-3783795:+|nuORF;ENST00000480816.5_1_20:3781734-3783795:+|nuORF;nc|ENSG00000101224|P30305-3|CDC25B;CDC25B|p.G524Afs*22|1|0.23|ENSG00000101224|chr20:3804645-3804645|A/-|frameshift_variant;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	ENST00000468979.1_1_20:3782308-3783795:+|nuORF	ENST00000468979.1_1_20:3782308-3783795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7923889160156	2	506.792924	1011.57129	0.29717	0.0001506	0.58979	0.0002989	0.88696	0.0004495	506.79315200148267	21.339	0.25077	21.339	21.215	21.465	0					9	5	2	0	0	0	0.034359	1	6150	6150		104.75	30.492	1	92369			762	436	446	449	769	769					0.06597145334569632
AEEPLARGLA	10	Unmodified	_AEEPLARGLA_					0	0	0			REV__ENST00000413800.5_1_7:99764329-99764836:-|nuORF	REV__ENST00000413800.5_1_7:99764329-99764836:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.78466796875	2	513.782556	1025.55056	3.1857	0.0016368	1.008	0.00051788	4.1937	0.0021547	513.7830074251757	47.214	0.20901	47.214	47.117	47.326	0					18	9	3	0	0	0	0.52707	1	18859	18859		42.396	42.396	1	192050	+		763	19018	447	450	770	770					0.03880554954912441
AEEPLVSSIT	10	Unmodified	_AEEPLVSSIT_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2744140625	2	523.274229	1044.53391	-0.00083075	-4.3471E-07	0.44294	0.00023178	0.44211	0.00023135	523.2744186410858	36.239	0.60801	36.239	36.068	36.676	0					48	17	4	0	0	0	0.46215	1	14204	14204		49.442	7.0454	1	10369000			764	3100	448	451	771	771					0.013420092782780557
AEERRKYTL	9	Unmodified	_AEERRKYTL_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.3203735351562	2	583.319837	1164.62512	0.50241	0.00029307	-1.0396	-0.0006064	-0.53715	-0.00031333	583.3194141250491	18.963	0.1349	18.963	18.896	19.031	0					8	4	3	0	0	0	0.51991	1	4824	4824		10.866	8.5201	1	91495			765	4370	449	452	772	772					0.04939317766275053
AEERRKYTL	9	Unmodified	_AEERRKYTL_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.215576171875	3	389.21565	1164.62512	0.5066	0.00019718	-0.89782	-0.00034945	-0.39122	-0.00015227	389.2153731734845	19.236	0.60844	19.236	19.031	19.639	0					22	12	4	0	0	0	0.44593	1	5898	5898		37.812	5.061	1	1219000			766	4370	449	452	773	773					0.04939317766275053
AEEVVKIEE	9	Unmodified	_AEEVVKIEE_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2744750976562	2	523.274229	1044.53391	0.088511	4.6316E-05	0.024406	1.2771E-05	0.11292	5.9087E-05	523.2741802292627	36.34	1.0946	36.34	36.084	37.179	0					89	30	6	0	0	0	0.12239	1	13772	13772		74.255	10.048	1	45869000			767	7189	450	453	774	774					0.013420092782780557
AEFAAKAA	8	Unmodified	_AEFAAKAA_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.7081298828125	2	389.708328	777.402104	0.15035	5.8591E-05	-0.61001	-0.00023773	-0.45967	-0.00017914	389.7081188537383	20.687	0.11777	20.687	20.629	20.747	0					4	2	2	0	0	0	0.58597	1	6756	6756		51.335	17.82	1	62854			768	5740	451	454	775	775					0.00449868771841011
AEFAAKAA	8	Unmodified	_AEFAAKAA_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.7081298828125	2	389.708328	777.402104	-0.69958	-0.00027263	0.057886	2.2559E-05	-0.64169	-0.00025007	389.7085210783793	20.701	0.16784	20.701	20.591	20.759	0					5	3	2	0	0	0	0.64144	1	6633	6633		42.396	3.3746	1	112790			769	5740	451	454	776	776					0.00449868771841011
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2459716796875	2	490.245806	978.47706	-1.2555	-0.0006155	1.1326	0.00055524	-0.12292	-6.0263E-05	490.2462822797792	25.556	0.15508	25.556	25.474	25.629	0					9	5	2	0	0	0	0.13907	1	7960	7960		63.534	12.341	1	172080		+	770	11562;11715	452	455	777	777					-0.013039934875791914
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2454528808594	2	490.245806	978.47706	0.5979	0.00029312	-0.82824	-0.00040604	-0.23034	-0.00011292	490.24552826538843	25.746	0.29889	25.746	25.586	25.885	0					6	4	2	0	0	0	0.029172	1	9187	9187		93.598	32.626	1	982830		+	771	11562;11715	452	455	778	778					-0.013039934875791914
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.24609375	2	490.245806	978.47706	-0.12057	-5.911E-05	0.34075	0.00016705	0.22017	0.00010794	490.2459352164999	25.636	0.16466	25.636	25.539	25.703	0					8	4	2	0	0	0	0.11635	1	8161	8161		68.846	8.7279	1	66391		+	772	11562;11715	452	455	779	779					-0.013039934875791914
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2455139160156	2	490.245806	978.47706	0.76963	0.00037731	-1.2859	-0.00063039	-0.51623	-0.00025308	490.24515763869516	25.71	0.24954	25.71	25.599	25.849	0					6	3	2	0	0	0	0.085309	1	9046	9046		76.17	33.774	1	1165700		+	773	11562;11715	452	455	780	780					-0.013039934875791914
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.253662109375	2	497.253631	992.49271	0.16503	8.2063E-05	-0.48349	-0.00024042	-0.31846	-0.00015836	497.2536389422452	26.186	0.15104	26.186	26.113	26.264	0					10	5	3	0	0	0	0.22837	1	7924	7924		58.23	17.452	1	87737			774	11631;8927	453	456	781	781					-0.003837069705241447
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2534484863281	2	497.253631	992.49271	0.70776	0.00035194	-1.2905	-0.00064172	-0.58276	-0.00028978	497.25317650174	26.415	0.22087	26.415	26.326	26.547	0					13	5	3	0	0	0	0.076532	1	9120	9120		85.862	16.234	1	905460			775	11631;8927	453	456	782	782					-0.003837069705241447
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2538757324219	2	497.253631	992.49271	-1.1462	-0.00056997	0.70431	0.00035022	-0.44192	-0.00021975	497.2541120814516	26.181	0.23706	26.181	26.086	26.323	0					17	7	4	0	0	0	0.056004	1	8193	8193		93.143	33.025	1	346570			776	11631;8927	453	456	783	783					-0.003837069705241447
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2535705566406	2	497.253631	992.49271	0.78116	0.00038844	-1.1599	-0.00057678	-0.37878	-0.00018835	497.2531617594484	26.469	0.26903	26.469	26.359	26.628	0					12	5	3	0	0	0	0.023928	1	9467	9467		115.49	38.72	1	1975900			777	11631;8927	453	456	784	784					-0.003837069705241447
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2535095214844	2	497.253631	992.49271	0.16816	8.3618E-05	-0.67413	-0.00033522	-0.50597	-0.0002516	497.2535468749673	26.251	0.18831	26.251	26.165	26.353	0					11	4	3	0	0	0	0.24334	1	8434	8434		56.434	19.275	1	301080			778	11631;8927	453	456	785	785					-0.003837069705241447
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.25347900390625	2	497.253631	992.49271	0.99548	0.00049501	-1.4978	-0.00074476	-0.50228	-0.00024976	497.25299367734993	26.392	0.52337	26.392	26.282	26.805	0					17	10	3	0	0	0	0.026538	1	9328	9328		112.41	45.982	1	2002300			779	11631;8927	453	456	786	786					-0.003837069705241447
AEFDTPGHTL	10	Unmodified	_AEFDTPGHTL_					0	0	0		ENST00000563762.5_1_15:72640446-72647950:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000563762.5_1_15:72640446-72647950:-|nuORF	ENST00000563762.5_1_15:72640446-72647950:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.25732421875	2	544.256371	1086.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.45	1	33.45	32.95	33.95	0								0	0	0	0.33107	1	11223	11223		45.972	5.3996	1				780	7792	454	457	787	787					-0.04160028178716857
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7813720703125	2	541.779482	1081.54441	2.0261	0.0010977	1.6411	0.0008891	3.6672	0.0019868	541.7803176501935	44.072	0.24472	44.072	43.989	44.234	0					23	14	2	0	0	0	0.0059092	2	17191	17191;17195		154.12	40.707	1	190310			781	11453	455	458	788;789	788					0.0069003672338112665
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7801513671875	2	541.779482	1081.54441	3.553	0.001925	-1.277	-0.00069184	2.2761	0.0012331	541.7786906122257	44.007	0.31979	44.007	43.895	44.215	0					30	13	3	0	0	0	0.012936	1	17638	17638		134.77	3.7342	1	859020			782	11453	455	458	790	790					0.0069003672338112665
AEFKHLTL	8	Unmodified	_AEFKHLTL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.77154541015625	2	479.77146	957.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.82	1	31.82	31.32	32.32	0								0	0	0	1.7419	1	11936	11936		66.429	0	1				783	6103	456	459	791	791					0.04790375277127623
AEFKKAHH	8	Unmodified	_AEFKKAHH_					0	0	0			REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.25830078125	2	484.259051	966.503549	-0.58425	-0.00028293	-0.92369	-0.0004473	-1.5079	-0.00073023	484.258467671906	35.039	0.31491	35.039	34.93	35.245	0					10	6	3	0	0	0	0.60719	1	13479	13479		47.916	1.9434	1	205780	+		784	16426	457	460	792	792					0.0189574019441352
AEFKLYLPV	9	Unmodified	_AEFKLYLPV_					0	0	0		ENST00000564150.1_1_16:58147931-58149427:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000564150.1_1_16:58147931-58149427:-|nuORF	ENST00000564150.1_1_16:58147931-58149427:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.2086181640625	3	360.542704	1078.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.941	1	18.941	18.441	19.441	0								0	0	0	0.30835	1	4806	4806		32.812	2.2436	1				785	1457	458	461	793	793					0.07012388142493364
AEFKRAVKV	9	Unmodified	_AEFKRAVKV_					0	0	0		ENSG00000165487|ENST00000382374|MICU2;ENST00000479790.2_1_13:22067390-22069479:-|nuORF	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3192749023438	2	524.319109	1046.62366	1.6259	0.0008525	-1.3171	-0.00069056	0.30886	0.00016194	524.3184528039372	20.486	0.16738	20.486	20.377	20.544	0					6	3	2	0	0	0	0.090954	1	6528	6528		56.434	0	1	806030			786	5803	459	462	794	794					0.10221728468172842
AEFLDKHVT	9	Unmodified	_AEFLDKHVT_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2775268554688	2	530.277106	1058.53966	2.3846	0.0012645	-1.4666	-0.00077772	0.91801	0.0004868	530.2762898295952	26.251	0.25931	26.251	26.164	26.423	0					14	6	3	0	0	0	0.063171	1	9041	9041		90.601	10.888	1	519920			787	1623	460	463	795	795					0.012731525806202626
AEFLDKHVT	9	Unmodified	_AEFLDKHVT_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2775268554688	2	530.277106	1058.53966	1.6443	0.00087195	-0.09043	-4.7953E-05	1.5539	0.000824	530.2770609994451	26.193	0.21348	26.193	26.085	26.298	0					9	4	3	0	0	0	0.047855	1	9235	9235		96.034	5.6638	1	532140			788	1623	460	463	796	796					0.012731525806202626
AEFNRIMSL	9	Unmodified	_AEFNRIMSL_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7793579101562	2	540.778959	1079.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.393	1	44.393	43.893	44.893	0								0	0	0	0.16453	1	16647	16647		56.434	5.0983	1				789	3641	461	464	797	797					0.006774990828262162
AEFRKLSIQ	9	Unmodified	_AEFRKLSIQ_					0	0	0		tr|U7SPB5|U7SPB5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01801PE=4SV=1	tr|U7SPB5|U7SPB5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01801PE=4SV=1	tr|U7SPB5|U7SPB5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01801PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.3140258789062	2	546.314023	1090.61349	1.2055	0.00065858	-1.8802	-0.0010272	-0.6747	-0.0003686	546.3134475478595	30.348	0.12553	30.348	30.251	30.377	0					6	4	2	0	0	0	0.48623	1	9670	9670		33.922	4.7516	1	59675			790	22693	462	465	798	798					0.07181120742961866
AEFRKLSIQ	9	Unmodified	_AEFRKLSIQ_					0	0	0		tr|U7SPB5|U7SPB5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01801PE=4SV=1	tr|U7SPB5|U7SPB5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01801PE=4SV=1	tr|U7SPB5|U7SPB5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01801PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3140869140625	2	546.314023	1090.61349	0.48583	0.00026542	0.10891	5.9502E-05	0.59474	0.00032492	546.3139996510856	30.82	0.1347	30.82	30.742	30.877	0					7	4	2	0	0	0	0.27249	1	10164	10164		52.937	6.4799	1	120200			791	22693	462	465	799	799					0.07181120742961866
AEFRTNKTL	9	Unmodified	_AEFRTNKTL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7935180664062	2	540.29583	1078.57711	1.9807	0.0010702	-3.8794	-0.002096	-1.8987	-0.0010259	540.2952899195251	36.848	0.50277	36.848	36.532	37.035	0					31	15	3	0	0	0	0.16002	1	14323	14323		66.429	5.4573	1	419900			792	5186	463	466	800	800					0.04096243846242942
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.3165893554688	2	571.316232	1140.61791	-0.031108	-1.7773E-05	1.5006	0.00085734	1.4695	0.00083957	571.3163128895723	32.705	0.29415	32.705	32.571	32.865	0					17	7	3	0	0	0	0.48255	1	12060	12060		42.864	17.29	1	287640			793	3070	464	467	801	801					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.213134765625	3	381.213246	1140.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.715	1	32.715	32.215	33.215	0								0	0	0	0.1116	1	12457	12457		77.533	35.195	1				794	3070	464	467	802	802					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.213134765625	3	381.213246	1140.61791	-0.51179	-0.0001951	0.50469	0.0001924	-0.007094	-2.7043E-06	381.2132265075494	32.687	0.31781	32.687	32.523	32.84	0					13	6	3	0	0	0	0.42408	1	12355	12355		53.597	25.02	1	189030			795	3070	464	467	803	803					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.3163452148438	2	571.316232	1140.61791	3.4023	0.0019438	-1.9022	-0.0010868	1.5001	0.00085706	571.3138410466594	32.646	1.1116	32.646	31.935	33.046	0					47	22	3	0	0	0	0.01242	1	12345	12345		123.21	54.421	1	765920			796	3070	464	467	804	804					0.05322585165822602
AEFTPAVHA	9	Unmodified	_AEFTPAVHA_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7373046875	2	471.737617	941.460681	-0.12373	-5.8366E-05	0.3223	0.00015204	0.19857	9.3673E-05	471.737748491624	30.375	0.24477	30.375	30.235	30.479	0					11	5	3	0	0	0	0.25109	1	11335	11335		55.504	13.108	1	252240			797	7254	465	468	805	805					-0.012390746536880215
AEFTPAVHA	9	Unmodified	_AEFTPAVHA_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7377014160156	2	471.737617	941.460681	-0.17875	-8.4323E-05	1.0672	0.00050346	0.8885	0.00041914	471.7379500260181	30.145	0.1332	30.145	30.077	30.21	0					5	3	2	0	0	0	0.26904	1	10229	10229		53.351	9.2347	1	28662			798	7254	465	468	806	806					-0.012390746536880215
AEFTPAVHA	9	Unmodified	_AEFTPAVHA_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.737060546875	2	471.737617	941.460681	-0.5592	-0.0002638	0.23148	0.0001092	-0.32772	-0.0001546	471.7376809337462	30.335	0.21154	30.335	30.197	30.408	0					10	4	3	0	0	0	0.25109	1	11213	11213		55.504	4.1688	1	321640			799	7254	465	468	807	807					-0.012390746536880215
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.75347900390625	2	479.753267	957.491981	0.028012	1.3439E-05	1.132	0.00054306	1.16	0.0005565	479.7538279439783	37.582	0.14378	37.582	37.496	37.639	0					14	8	2	0	0	0	0.24095	1	12300	12300		56.721	16.148	1	122550			800	4429	466	469	808	808					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.75335693359375	2	479.753267	957.491981	0.48147	0.00023099	-0.21271	-0.00010205	0.26876	0.00012894	479.75309367257336	37.906	0.19872	37.906	37.79	37.989	0					20	8	3	0	0	0	0.063823	1	14384	14384		90.37	44.398	1	769180			801	4429	466	469	809	809					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.75335693359375	2	479.753267	957.491981	-1.4081	-0.00067554	1.652	0.00079257	0.24393	0.00011703	479.75407856306634	37.651	0.13054	37.651	37.577	37.707	0					13	7	2	0	0	0	0.12239	1	12711	12711		74.255	33.477	1	206510			802	4429	466	469	810	810					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7529602050781	2	479.753267	957.491981	0.66907	0.00032099	-1.1596	-0.00055632	-0.49052	-0.00023533	479.752663656535	37.855	0.16179	37.855	37.776	37.937	0					17	5	4	0	0	0	0.034359	1	14819	14819		104.75	42.639	1	831960			803	4429	466	469	811	811					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.75335693359375	2	479.753267	957.491981	0.033297	1.5974E-05	1.6905	0.00081103	1.7238	0.000827	479.75406516838575	37.641	0.11491	37.641	37.591	37.706	0					8	5	2	0	0	0	0.12239	1	13467	13467		74.255	26.598	1	86810			804	4429	466	469	812	812					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7535095214844	2	479.753267	957.491981	-0.30926	-0.00014837	0.86574	0.00041534	0.55648	0.00026697	479.7537232218242	37.639	0.12487	37.639	37.568	37.693	0					15	6	3	0	0	0	0.12239	1	13463	13463		74.255	22.92	1	163790			805	4429	466	469	813	813					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7541198730469	2	479.753267	957.491981	-2.926	-0.0014038	3.0408	0.0014588	0.11479	5.5073E-05	479.75461415530873	37.629	0.10561	37.629	37.579	37.685	0					9	5	2	0	0	0	0.35021	1	13470	13470		45.972	8.8131	1	60666			806	4429	466	469	814	814					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7536315917969	2	479.753267	957.491981	0.92187	0.00044227	-0.77252	-0.00037062	0.14936	7.1655E-05	479.75293670453664	37.795	0.16186	37.795	37.691	37.852	0					11	3	4	0	0	0	0.055856	1	14793	14793		93.195	47.244	1	1699700			807	4429	466	469	815	815					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7530212402344	2	479.753267	957.491981	2.3014	0.0011041	-2.4329	-0.0011672	-0.13148	-6.3079E-05	479.7520670232402	37.783	0.16286	37.783	37.674	37.837	0					10	3	4	0	0	0	0.037569	1	14809	14809		101.6	55.144	1	581600			808	4429	466	469	816	816					0.01153498380426754
AEFVRTAEK	9	Unmodified	_AEFVRTAEK_					0	0	0		CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant;CCDC112|p.E223Sfs*20|2|0.29|ENSG00000164221|chr5:115275219-115275219|T/-|frameshift_variant;ENSG00000164221|ENST00000379611|CCDC112	CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.85858154296875	3	350.857463	1049.55056	3.0367	0.0010655	-0.036674	-1.2867E-05	3	0.0010526	350.85752431433684	18.694	0.16347	18.694	18.589	18.752	0					5	3	2	0	0	0	0.60749	1	5654	5654		16.007	0	1	1495100			809	393	467	470	817	817					0.027765549548803392
AEGAAGRQSEL	11	Unmodified	_AEGAAGRQSEL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7723388671875	2	544.770177	1087.5258	3.705	0.0020184	-0.22625	-0.00012325	3.4787	0.0018951	544.7698988626422	20.559	0.7655	20.559	20.311	21.076	0					33	15	5	0	0	0	0.063642	1	6542	6542		98.582	10.886	1	15960000			810	1059	468	471	818	818					-0.014461249184705594
AEGADPSHRQS	11	Unmodified	_AEGADPSHRQS_					0	0	0			REV__ENSG00000262179|ENST00000573382|MYMX	REV__ENSG00000262179|ENST00000573382|MYMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.7633056640625	2	577.762883	1153.51121	-0.0667	-3.8537E-05	-0.22337	-0.00012906	-0.29007	-0.00016759	577.7629150451819	26.365	1.6244	26.365	25.181	26.805	0					72	36	4	0	0	0	0.49805	1	9056	9056		44.377	1.981	1	793000	+		811	17781	469	472	819	819					-0.05940197066615838
AEGAGEQKVY	10	Unmodified	_AEGAGEQKVY_					0	0	0		HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|18|1|anti-sense	HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|18|1|anti-sense	HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|18|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2570190429688	2	526.256371	1050.49819	0.6269	0.00032991	0.67953	0.00035761	1.3064	0.00068751	526.2567945607054	26.543	0.21103	26.543	26.412	26.623	0					10	7	2	0	0	0	0.36476	1	8047	8047		60.118	8.9256	1	60843			812	11198	470	473	820	820					-0.025040281787141794
AEGASLGPAA	10	Unmodified	_AEGASLGPAA_					0	0	0		MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant;ENST00000494257.1_1_1:3407490-3409358:-|nuORF;ENST00000294599.8_1_1:3407490-3411287:-|nuORF;ENST00000356575.8_1_1:3407490-3411251:-|nuORF	MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant	MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.2138671875	2	422.213975	842.413397	-0.17795	-7.5132E-05	0.24097	0.00010174	0.063021	2.6608E-05	422.21400862507494	14.705	0.26614	14.705	14.596	14.862	0					8	5	2	0	0	0	0.47859	1	3885	3885		47.657	5.2612	1	142640			813	11358	471	474	821	821					-0.014113539246750406
AEGASLGPAA	10	Unmodified	_AEGASLGPAA_					0	0	0		MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant;ENST00000494257.1_1_1:3407490-3409358:-|nuORF;ENST00000294599.8_1_1:3407490-3411287:-|nuORF;ENST00000356575.8_1_1:3407490-3411251:-|nuORF	MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant	MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.21392822265625	2	422.213975	842.413397	-0.33649	-0.00014207	0.034212	1.4445E-05	-0.30228	-0.00012763	422.2140628285326	14.682	0.16869	14.682	14.609	14.777	0					6	3	2	0	0	0	0.34667	1	3716	3716		62.107	3.8775	1	48062			814	11358	471	474	822	822					-0.014113539246750406
AEGATCHLL	9	Carbamidomethyl (C)	_AEGATC(Carbamidomethyl (C))HLL_	AEGATC(1)HLL		AEGATC(48)HLL		0	1	0		ENST00000438257.8_2_14:80669457-80677836:-|nuORF;ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2	ENST00000438257.8_2_14:80669457-80677836:-|nuORF	ENST00000438257.8_2_14:80669457-80677836:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.4919128417969	3	324.492015	970.454216	0.5342	0.00017334	-0.86168	-0.00027961	-0.32749	-0.00010627	324.4916787850883	18.759	0.13161	18.759	18.671	18.803	0					7	3	3	0	0	0	0.33044	1	5552	5552		47.657	15.702	1	177310			815	7773	472	475	823	823	337				-0.03219335876690366
AEGEIYTKL	9	Unmodified	_AEGEIYTKL_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.271728515625	2	512.27149	1022.52843	-0.10752	-5.5077E-05	0.47038	0.00024096	0.36286	0.00018588	512.2717948939535	33.916	0.1901	33.916	33.823	34.013	0					15	7	3	0	0	0	0.14578	1	11060	11060		68.846	17.653	1	147840			816	4239	473	476	824	824					0.01806330486465413
AEGEIYTKL	9	Unmodified	_AEGEIYTKL_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.271240234375	2	512.27149	1022.52843	0.0053735	2.7527E-06	0.21399	0.00010962	0.21937	0.00011238	512.2715557477927	34.178	0.31205	34.178	34.06	34.372	0					19	8	3	0	0	0	0.037712	1	12695	12695		101.46	31.832	1	721090			817	4239	473	476	825	825					0.01806330486465413
AEGEIYTKL	9	Unmodified	_AEGEIYTKL_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2726440429688	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.248	1	34.248	33.748	34.748	0								0	0	0	0.17415	1	13185	13185		54.722	8.2656	1				818	4239	473	476	826	826					0.01806330486465413
AEGEIYTKL	9	Unmodified	_AEGEIYTKL_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.271484375	2	512.27149	1022.52843	-0.45115	-0.00023111	0.76726	0.00039304	0.31611	0.00016193	512.2718042877992	34.173	0.38396	34.173	34.028	34.412	0					15	9	2	0	0	0	0.032383	1	13151	13151		106.68	31.64	1	398630			819	4239	473	476	827	827					0.01806330486465413
AEGEIYTKL	9	Unmodified	_AEGEIYTKL_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.271484375	2	512.27149	1022.52843	-1.7071	-0.00087451	2.4626	0.0012615	0.75551	0.00038703	512.2729441852471	33.973	0.21656	33.973	33.878	34.095	0					13	6	3	0	0	0	0.10915	1	11978	11978		77.318	10.888	1	149180			820	4239	473	476	828	828					0.01806330486465413
AEGEIYTKL	9	Unmodified	_AEGEIYTKL_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2720947265625	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.149	1	34.149	33.649	34.649	0								0	0	0	0.084509	1	13058	13058		76.17	15.198	1				821	4239	473	476	829	829					0.01806330486465413
AEGEKHLIY	9	Unmodified	_AEGEKHLIY_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2776489257812	2	530.277106	1058.53966	-1.2018	-0.00063729	2.4065	0.0012761	1.2047	0.00063883	530.2784105441035	41.274	0.14924	41.274	41.174	41.323	0					14	8	2	0	0	0	0.33044	1	14555	14555		47.657	5.2612	1	62626	+		822	15344	474	477	830	830					0.01273152580643
AEGFVRAL	8	Unmodified	_AEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.74267578125	2	431.742702	861.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.042	1	35.042	34.542	35.542	0								0	0	0	1.7419	1	11481	11481		99.375	32.946	1				823	6675	475	478	831	831					0.03457533071571106
AEGFVRAL	8	Unmodified	_AEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.74261474609375	2	431.742702	861.470852	0.75599	0.00032639	-1.3996	-0.00060427	-0.64362	-0.00027788	431.74211129425726	35.336	0.31358	35.336	35.228	35.542	0					16	8	3	0	0	0	0.39125	1	13226	13226		71.877	29.481	1	203030			824	6675	475	478	832	832					0.03457533071571106
AEGFVRAL	8	Unmodified	_AEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.7419738769531	2	431.742702	861.470852	-0.8113	-0.00035027	-0.19002	-8.2041E-05	-1.0013	-0.00043231	431.74261531044846	35.105	0.17839	35.105	35.039	35.217	0					14	8	3	0	0	0	0.61938	1	11869	11869		45.952	10.751	1	76680			825	6675	475	478	833	833					0.03457533071571106
AEGFVRAL	8	Unmodified	_AEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.74237060546875	2	431.742702	861.470852	0.98889	0.00042695	-1.2327	-0.00053221	-0.24381	-0.00010526	431.7421286311512	35.325	0.32982	35.325	35.214	35.544	0					17	9	3	0	0	0	0.43813	1	13674	13674		66.429	27.176	1	466420			826	6675	475	478	834	834					0.03457533071571106
AEGFVRAL	8	Unmodified	_AEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7423095703125	2	431.742702	861.470852	0.93028	0.00040164	-1.5	-0.0006476	-0.56969	-0.00024596	431.7420940885673	35.271	0.37065	35.271	35.113	35.484	0					15	7	3	0	0	0	0.35045	1	13617	13617		76.774	30.822	1	408910			827	6675	475	478	835	835					0.03457533071571106
AEGGSPGLLP	10	Unmodified	_AEGGSPGLLP_					0	0	0			REV__ENST00000367302.5_2_1:201592193-201592268:+|nuORF	REV__ENST00000367302.5_2_1:201592193-201592268:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2373352050781	2	449.23745	896.460347	-0.093476	-4.1993E-05	1.7011	0.00076422	1.6077	0.00072222	449.23827233581886	29.172	0.51399	29.172	28.976	29.49	0					29	11	4	0	0	0	0.24485	1	10759	10759		73.975	15.193	1	1319000	+		828	18597	476	479	836	836					0.007975056264740488
AEGIVNGHTL	10	Unmodified	_AEGIVNGHTL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.76605224609375	2	505.766906	1009.51926	-1.9682	-0.00099544	1.2952	0.00065508	-0.67297	-0.00034037	505.767547329083	29.965	0.17232	29.965	29.89	30.062	0					9	4	3	0	0	0	0.48965	1	10154	10154		46.457	2.0796	1	71607			829	2595	477	480	837	837					0.014879819208090339
AEGIVNGHTL	10	Unmodified	_AEGIVNGHTL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7667236328125	2	505.766906	1009.51926	2.9352	0.0014845	-3.3437	-0.0016911	-0.40848	-0.0002066	505.7657133382642	30.123	0.60371	30.123	29.913	30.517	0					16	12	2	0	0	0	0.14893	1	11128	11128		86.882	7.4305	1	473970			830	2595	477	480	838	838					0.014879819208090339
AEGKEVLLL	9	Unmodified	_AEGKEVLLL_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2917175292969	2	486.292225	970.569897	0.82693	0.00040213	-1.2018	-0.00058442	-0.37486	-0.00018229	486.29143869279096	40.884	0.41092	40.884	40.748	41.159	0					18	7	4	0	0	0	0.13726	1	16234	16234		70.816	3.489	1	1247200			831	1748;2353	478	481	839	839					0.08343511245811897
AEGKFAQKE	9	Unmodified	_AEGKFAQKE_					0	0	0		WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;nc|ENSG00000171804|Q6ZQQ6|WDR87	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2616882324219	2	504.261456	1006.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.323	1	37.323	36.823	37.823	0								0	0	0	0.22075	1	14142	14142		32.812	0	1				832	6321	479	482	840	840					0.005365795465195333
AEGKQHAL	8	Unmodified	_AEGKQHAL_					0	0	0		nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1;ENSG00000101898|ENST00000394552|MCTS2;MCTS1|p.C144R|1|0.23|ENSG00000232119|chrX:120611044-120611044|T/C|missense_variant;ENST00000487133.1_1_X:119742243-119746116:+|nuORF	nc|ENSG00000232119|Q9ULC4-2|MCTS1	nc|ENSG00000232119|Q9ULC4-2|MCTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.23016357421875	2	427.229959	852.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.411	1	14.411	13.911	14.911	0								0	0	0	1.7419	1	3052	3052		31.955	1.4512	1				833	7896	480	483	841	841					0.013240585491416823
AEGLALRAP	9	Unmodified	_AEGLALRAP_					0	0	0			REV__ENSG00000183530|ENST00000327423|PRR14L	REV__ENSG00000183530|ENST00000327423|PRR14L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.2615966796875	2	449.261259	896.507966	0.13305	5.9774E-05	0.099507	4.4704E-05	0.23256	0.00010448	449.26126283013593	26.923	0.31369	26.923	26.685	26.999	0					11	7	2	0	0	0	0.41113	1	9329	9329		40.778	5.1599	1	48561	+		834	16938	481	484	842	842					0.055572046173210765
AEGPAAWGAQ	10	Unmodified	_AEGPAAWGAQ_					0	0	0			REV__ENST00000467401.1_1_9:96070551-96082671:+|nuORF	REV__ENST00000467401.1_1_9:96070551-96082671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2244873046875	2	479.224874	956.435195	0.90236	0.00043243	-1.642	-0.00078687	-0.73959	-0.00035443	479.22402830574765	20.537	0.26558	20.537	20.477	20.743	0					8	5	3	0	0	0	0.38194	1	6550	6550		58.23	4.8785	1	872640	+		835	16031	482	485	843	843					-0.04476549176104072
AEGPPPKK	8	Unmodified	_AEGPPPKK_					0	0	0			REV__ENSG00000180720|ENST00000682254|CHRM4	REV__ENSG00000180720|ENST00000682254|CHRM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.2375793457031	2	412.237253	822.459953	0.63885	0.00026336	0.019935	8.218E-06	0.65878	0.00027157	412.23723126780123	16.413	0.094261	16.413	16.364	16.458	0					5	3	2	0	0	0	0.60719	1	3741	3741		47.916	5.4411	1	43951	+		836	16818	483	486	844	844					0.04162130697284283
AEGPPRLAI	9	Unmodified	_AEGPPRLAI_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.268310546875	2	462.269084	922.523616	-0.80321	-0.0003713	0.34095	0.00015761	-0.46226	-0.00021369	462.2692764985718	35.881	0.1789	35.881	35.773	35.952	0					13	8	2	0	0	0	0.24095	1	12140	12140		56.721	14.325	1	73672			837	1820	484	487	845	845					0.059254911343600725
AEGPPRLAI	9	Unmodified	_AEGPPRLAI_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2682800292969	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.879	1	35.879	35.379	36.379	0								0	0	0	0.22284	1	12811	12811		47.657	3.2801	1				838	1820	484	487	846	846					0.059254911343600725
AEGPPRLAI	9	Unmodified	_AEGPPRLAI_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.26898193359375	2	462.269084	922.523616	0.79868	0.00036921	0.65692	0.00030367	1.4556	0.00067288	462.26950564762103	36.022	0.51197	36.022	35.721	36.233	0					23	10	3	0	0	0	0.12239	1	13971	13971		74.255	13.283	1	549860			839	1820	484	487	847	847					0.059254911343600725
AEGPVVEKI	9	Unmodified	_AEGPVVEKI_					0	0	0		CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.L1020*|1|0.09|ENSG00000171316|chr8:60822599-60822599|T/-|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2682800292969	2	471.26875	940.522947	-0.42126	-0.00019852	-0.21028	-9.9098E-05	-0.63153	-0.00029762	471.26854806175936	29.385	0.12734	29.385	29.332	29.459	0					6	4	2	0	0	0	0.24334	1	9275	9275		56.434	12.057	1	37692			840	506	485	488	848	848					0.0503065169467618
AEGPVVEKI	9	Unmodified	_AEGPVVEKI_					0	0	0		CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.L1020*|1|0.09|ENSG00000171316|chr8:60822599-60822599|T/-|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2686462402344	2	471.26875	940.522947	-0.60604	-0.00028561	-0.12589	-5.9328E-05	-0.73193	-0.00034494	471.2686735805467	29.679	0.25443	29.679	29.557	29.812	0					12	6	2	0	0	0	0.076532	1	10622	10622		85.862	19.433	1	335520			841	506	485	488	849	849					0.0503065169467618
AEGQLVPAEK	10	Unmodified	_AEGQLVPAEK_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2854614257812	2	521.282389	1040.55022	0.075713	3.9468E-05	4.4165	0.0023022	4.4922	0.0023417	521.2843358263791	14.011	0.13903	14.011	13.965	14.104	0					7	3	3	0	0	0	0.4758	1	3327	3327		47.96	3.5823	1	1052000	+		842	15383	486	489	850	850					0.031571352350511006
AEGSQQSIIS	10	Unmodified	_AEGSQQSIIS_					0	0	0			REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.5051574707031	3	340.504978	1018.4931	1.4775	0.0005031	-1.3046	-0.00044424	0.17288	5.8865E-05	340.50467355398825	23.468	0.21662	23.468	23.395	23.612	0					9	4	3	0	0	0	0.53919	1	8096	8096		41.08	3.4802	1	687860	+		843	17080	487	490	851	851					-0.01540332041304282
AEGTAGFVTIV	11	Unmodified	_AEGTAGFVTIV_					0	0	0			REV__ENST00000423298.5_1_3:185677803-185689513:+|nuORF	REV__ENST00000423298.5_1_3:185677803-185689513:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7857666015625	2	532.784764	1063.55498	1.0143	0.00054038	-0.2388	-0.00012723	0.77546	0.00041315	532.784717094713	31.02	0.10706	31.02	30.947	31.054	0					7	4	2	0	0	0	0.23884	1	9932	9932		69.628	0	1	139230	+		844	19096	488	491	852	852					0.025740193777892273
AEGTAQQRL	9	Unmodified	_AEGTAQQRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.25604248046875	2	487.256705	972.498858	-0.053767	-2.6198E-05	-1.2455	-0.0006069	-1.2993	-0.0006331	487.25591153080217	19.37	0.14447	19.37	19.297	19.442	0					7	4	2	0	0	0	0.07136	1	4996	4996		87.696	16.401	1	85766			845	6707	489	492	853	853					0.011508112609931231
AEGTAQQRL	9	Unmodified	_AEGTAQQRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2560729980469	2	487.256705	972.498858	0.71959	0.00035063	-1.9623	-0.00095617	-1.2428	-0.00060554	487.255710364619	19.71	0.26623	19.71	19.569	19.835	0					12	6	3	0	0	0	0.01873	1	6007	6007		124.08	30.074	1	627400			846	6707	489	492	854	854					0.011508112609931231
AEGTAQQRL	9	Unmodified	_AEGTAQQRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2563781738281	2	487.256705	972.498858	-1.2438	-0.00060604	0.68872	0.00033559	-0.55505	-0.00027045	487.25703520531823	19.386	0.21585	19.386	19.312	19.528	0					9	6	2	0	0	0	0.01873	1	5246	5246		124.08	30.885	1	201960			847	6707	489	492	855	855					0.011508112609931231
AEGTAQQRL	9	Unmodified	_AEGTAQQRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2563781738281	2	487.256705	972.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.476	1	19.476	18.976	19.976	0								0	0	0	0.11736	1	5296	5296		67.494	9.2474	1				848	6707	489	492	856	856					0.011508112609931231
AEGTAQQRL	9	Unmodified	_AEGTAQQRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2570495605469	2	487.256705	972.498858	0.81285	0.00039607	-0.14286	-6.9611E-05	0.66999	0.00032645	487.2565351891748	19.631	0.21645	19.631	19.524	19.741	0					8	4	2	0	0	0	0.15163	1	6113	6113		67.494	5.8024	1	1336800			849	6707	489	492	857	857					0.011508112609931231
AEGTAQQRL	9	Unmodified	_AEGTAQQRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2565612792969	2	487.256705	972.498858	2.5489	0.001242	-2.4374	-0.0011877	0.11148	5.4317E-05	487.255497726795	19.615	0.21555	19.615	19.508	19.723	0					6	4	2	0	0	0	0.063171	1	6106	6106		90.601	26.394	1	825390			850	6707	489	492	858	858					0.011508112609931231
AEGTHPGIAPQ	11	Unmodified	_AEGTHPGIAPQ_					0	0	0		NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.848876953125	3	359.848967	1076.52507	1.2458	0.00044831	-1.3388	-0.00048177	-0.09298	-3.3459E-05	359.848349330245	23.837	0.21767	23.837	23.763	23.981	0					10	4	3	0	0	0	0.65907	1	8168	8168		34.087	34.087	1	385980			851	3902	490	493	859	859					-0.010129195675517622
AEGTVVMKL	9	Oxidation (M)	_AEGTVVM(Oxidation (M))KL_		AEGTVVM(1)KL		AEGTVVM(60)KL	0	0	1		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8;ENST00000565062.5_1_16:90097706-90103159:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.26300048828125	2	482.26261	962.510668	3.4728	0.0016748	-2.7668	-0.0013343	0.70609	0.00034052	482.2613711924259	30.156	0.1046	30.156	30.102	30.206	0					6	4	2	0	0	0	0.21263	1	9882	9882		60.118	6.7668	1	45846			852	4421	491	494	860	860		180			0.027912919599884845
AEGTVVMKL	9	Oxidation (M)	_AEGTVVM(Oxidation (M))KL_		AEGTVVM(1)KL		AEGTVVM(82)KL	0	0	1		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8;ENST00000565062.5_1_16:90097706-90103159:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.26220703125	2	482.26261	962.510668	0.89641	0.00043231	-2.7994	-0.00135	-1.9029	-0.00091772	482.26146558957294	30.334	0.80098	30.334	29.879	30.68	0					29	16	4	0	0	0	0.087861	1	11227	11227		82.241	6.0708	1	873070			853	4421	491	494	861	861		180			0.027912919599884845
AEGTVVSNL	9	Unmodified	_AEGTVVSNL_					0	0	0		ENST00000489675.1_1_1:54387326-54394129:-|nuORF;ENSG00000081870|ENST00000194214|IFT25	ENST00000489675.1_1_1:54387326-54394129:-|nuORF	ENST00000489675.1_1_1:54387326-54394129:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2352600097656	2	445.234907	888.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.667	1	36.667	36.167	37.167	0								0	0	0	0.15687	1	14270	14270		58.23	5.2932	1				854	1664	492	495	862	862					0.006572017638518446
AEGVTGKGQSL	11	Unmodified	_AEGVTGKGQSL_					0	0	0			REV__ENST00000561688.1_1_16:2294242-2294386:-|nuORF	REV__ENST00000561688.1_1_16:2294242-2294386:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7779541015625	2	523.77747	1045.54039	0.090584	4.7446E-05	3.6066	0.0018891	3.6972	0.0019365	523.7810052238127	32.558	1.0545	32.558	31.811	32.865	0					46	25	4	0	0	0	0.24536	1	12000	12000		68.846	0.059317	1	759100	+		855	20299	493	496	863	863					0.019439472296880922
AEHDAVRNA	9	Unmodified	_AEHDAVRNA_					0	0	0		ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.7384033203125	2	491.73868	981.462806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.062	1	14.062	13.562	14.562	0								0	0	0	0.3245	1	3344	3344		30.318	8.6154	1				856	6979	494	497	864	864					-0.0286664591585577
AEHDAVRNAL	10	Unmodified	_AEHDAVRNAL_					0	0	0		ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.28125	2	548.280712	1094.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.91	1	21.91	21.41	22.41	0								0	0	0	0.16204	1	7337	7337		68.846	37.316	1				857	6979	495	498	865	865					0.003378851810339256
AEHDAVRNAL	10	Unmodified	_AEHDAVRNAL_					0	0	0		ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2810668945312	2	548.280712	1094.54687	0.51699	0.00028346	0.22241	0.00012194	0.7394	0.0004054	548.2807685368015	21.895	0.16393	21.895	21.789	21.953	0					6	3	2	0	0	0	0.24329	1	7210	7210		74.165	34.912	1	2213600			858	6979	495	498	866	866					0.003378851810339256
AEHERELAL	9	Unmodified	_AEHERELAL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2778930664062	2	534.277638	1066.54072	2.2665	0.001211	-1.8543	-0.00099072	0.41221	0.00022024	534.2767574319496	25.748	0.26473	25.748	25.664	25.929	0					10	4	4	0	0	0	0.046074	1	8827	8827		70.816	14.382	1	689990			859	2899;6458	496	499	867	867					0.010113669495240174
AEHERELAL	9	Unmodified	_AEHERELAL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2782592773438	2	534.277638	1066.54072	1.1081	0.00059204	-0.049309	-2.6345E-05	1.0588	0.0005657	534.2775843581865	25.542	0.14473	25.542	25.474	25.619	0					8	4	2	0	0	0	0.19891	1	8133	8133		38.754	8.4359	1	89470			860	2899;6458	496	499	868	868					0.010113669495240174
AEHERELAL	9	Unmodified	_AEHERELAL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2781982421875	2	534.277638	1066.54072	1.8296	0.00097753	-0.90654	-0.00048434	0.92308	0.00049318	534.2771971751446	25.659	0.17019	25.659	25.548	25.718	0					9	3	3	0	0	0	0.037098	1	9022	9022		76.17	11.962	1	993370			861	2899;6458	496	499	869	869					0.010113669495240174
AEHEVKKVTL	10	Unmodified	_AEHEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.2239685058594	3	385.224034	1152.65027	0.033192	1.2786E-05	-0.23246	-8.9548E-05	-0.19927	-7.6762E-05	385.22407927417015	20.15	0.14611	20.15	20.095	20.241	0					9	3	4	0	0	0	0.20981	1	6210	6210		78.264	31.807	1	646790			862	2066	497	500	870	870					0.08005372568845814
AEHEVKKVTL	10	Unmodified	_AEHEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.3328247070312	2	577.332413	1152.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.078	1	20.078	19.578	20.578	0								0	0	0	0.010561	1	6451	6451		85.161	37.503	1				863	2066	497	500	871	871					0.08005372568845814
AEHFLEQQM	9	Unmodified	_AEHFLEQQM_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.7579345703125	2	566.758223	1131.50189	1.1901	0.00067452	-0.72613	-0.00041154	0.46401	0.00026298	566.7579736546346	34.283	0.22785	34.283	34.215	34.443	0					25	11	3	0	0	0	0.15558	1	11200	11200		60.118	25.946	1	310980			864	5559	498	501	872	872					-0.0585968167649753
AEHFLEQQM	9	Unmodified	_AEHFLEQQM_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.7586669921875	2	566.758223	1131.50189	0.22917	0.00012988	0.033243	1.8841E-05	0.26241	0.00014872	566.758361023625	34.57	0.36841	34.57	34.443	34.811	0					27	9	5	0	0	0	0.014413	1	12876	12876		127.46	70.741	1	1930900			865	5559	498	501	873	873					-0.0585968167649753
AEHFLEQQM	9	Unmodified	_AEHFLEQQM_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.2605590820312	2	566.758223	1131.50189	0.12692	7.1931E-05	0.49757	0.000282	0.62448	0.00035393	566.7586243463658	34.367	0.21441	34.367	34.285	34.499	0					24	9	4	0	0	0	0.27123	1	11579	11579		54.776	9.7541	1	341710			866	5559	498	501	874	874					-0.0585968167649753
AEHFLEQQM	9	Unmodified	_AEHFLEQQM_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7586059570312	2	566.758223	1131.50189	1.9308	0.0010943	-1.3094	-0.00074212	0.62139	0.00035218	566.7576316348935	34.577	0.37431	34.577	34.495	34.869	0					24	10	3	0	0	0	0.12418	1	13327	13327		66.962	24.098	1	2374600			867	5559	498	501	875	875					-0.0585968167649753
AEHFLEQQM	9	Unmodified	_AEHFLEQQM_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7583618164062	2	566.758223	1131.50189	0.25672	0.0001455	0.39114	0.00022168	0.64786	0.00036718	566.7583897138267	34.56	0.133	34.56	34.515	34.648	0					5	3	2	0	0	0	0.51757	1	13344	13344		30.318	3.6248	1	69109			868	5559	498	501	876	876					-0.0585968167649753
AEHFLEQQM	9	Oxidation (M)	_AEHFLEQQM(Oxidation (M))_		AEHFLEQQM(1)		AEHFLEQQM(91)	0	0	1		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.7557373046875	2	574.755681	1147.49681	-0.10549	-6.0629E-05	0.12491	7.179E-05	0.01942	1.1162E-05	574.7559508253593	27.921	0.22086	27.921	27.822	28.043	0					13	5	3	0	0	0	0.063171	1	9821	9821		90.601	41.065	1	396170			869	5559	498	502	877	877		223			-0.07103985539129098
AEHGAWAL	8	Unmodified	_AEHGAWAL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.7109069824219	2	427.711402	853.408252	-0.97385	-0.00041653	-0.10268	-4.3915E-05	-1.0765	-0.00046044	427.711592382164	35.501	0.22757	35.501	35.418	35.645	0					18	11	3	0	0	0	0.68754	1	12011	12011		35.201	8.4046	1	100920			870	5224	499	503	878	878					-0.024316129966223343
AEHGAWAL	8	Unmodified	_AEHGAWAL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.7114562988281	2	427.711402	853.408252	1.0529	0.00045032	-1.4648	-0.00062651	-0.41193	-0.00017619	427.7107415119641	35.628	0.51284	35.628	35.518	36.03	0					14	10	2	0	0	0	0.4723	1	13781	13781		62.978	10.679	1	469360			871	5224	499	503	879	879					-0.024316129966223343
AEHHVATL	8	Unmodified	_AEHHVATL_					0	0	0		ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2297668457031	2	439.229959	876.445365	0.57841	0.00025405	-0.27649	-0.00012144	0.30192	0.00013261	439.23028127812256	19.086	0.27312	19.086	19.004	19.277	0					10	6	3	0	0	0	0.34985	1	5710	5710		76.847	0	1	232730			872	3035	500	504	880	880					0.0022005854914368683
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.2789916992188	2	528.277638	1054.54072	2.336	0.0012341	0.35961	0.00018997	2.6956	0.001424	528.2777767479171	21.282	0.087685	21.282	21.218	21.306	0					4	2	2	0	0	0	0.13726	1	5837	5837		70.816	28.342	1	42667			873	4803	501	505	881	881					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.27783203125	2	528.277638	1054.54072	2.0039	0.0010586	-1.2986	-0.000686	0.70531	0.0003726	528.2769805615527	21.633	0.23361	21.633	21.533	21.766	0					9	5	3	0	0	0	0.070005	1	6893	6893		88.177	29.395	1	375540			874	4803	501	505	882	882					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.52081298828125	3	352.520851	1054.54072	0.49347	0.00017396	-0.52317	-0.00018443	-0.029693	-1.0467E-05	352.5206480327067	21.605	0.31889	21.605	21.504	21.823	0					14	7	3	0	0	0	0.13267	1	6899	6899		98.582	21.264	1	1188300			875	4803	501	505	883	883					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.2783813476562	2	528.277638	1054.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.351	1	21.351	20.851	21.851	0								0	0	0	0.17415	1	6115	6115		54.722	15.47	1				876	4803	501	505	884	884					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2779541015625	2	528.277638	1054.54072	0.91808	0.000485	-0.31027	-0.00016391	0.60781	0.00032109	528.2773543051	21.534	0.16804	21.534	21.424	21.592	0					9	3	3	0	0	0	0.017421	1	7143	7143		126.24	30.209	1	1019400			877	4803	501	505	885	885					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.5208435058594	3	352.520851	1054.54072	0.50585	0.00017832	-0.61004	-0.00021505	-0.1042	-3.6731E-05	352.5206525131356	21.5	0.16737	21.5	21.441	21.608	0					9	3	3	0	0	0	0.19605	1	7149	7149		98.582	98.582	1	937570			878	4803	501	505	886	886					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2780151367188	2	528.277638	1054.54072	0.69941	0.00036948	0.19715	0.00010415	0.89656	0.00047363	528.2777267846532	21.548	0.26686	21.548	21.437	21.704	0					13	5	3	0	0	0	0.28897	1	7040	7040		51.193	3.5354	1	976010			879	4803	501	505	887	887					0.01563366949540068
AEHKAKSL	8	Unmodified	_AEHKAKSL_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.2540588378906	2	442.253434	882.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.754	1	12.754	12.254	13.254	0								0	0	0	1.7419	1	2947	2947		79.713	7.8351	1				880	4818	502	506	888	888					0.046369181002773985
AEHKAKSL	8	Unmodified	_AEHKAKSL_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.25311279296875	2	442.253434	882.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.77	1	12.77	12.27	13.27	0								0	0	0	1.7419	1	2800	2800		69.628	12.907	1				881	4818	502	506	889	889					0.046369181002773985
AEHKIYGKLA	10	Unmodified	_AEHKIYGKLA_					0	0	0			REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.21630859375	3	377.216991	1128.62914	-0.12828	-4.839E-05	-2.395	-0.00090342	-2.5232	-0.00095181	377.2160957280818	13.716	0.050104	13.716	13.685	13.735	0					4	2	2	0	0	0	0.65051	1	2798	2798		28.081	7.1346	1	49276	+		882	14937	503	507	890	890					0.0699740725999618
AEHKIYGKLA	10	Unmodified	_AEHKIYGKLA_					0	0	0			REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.2156677246094	3	377.216991	1128.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.932	1	13.932	13.432	14.432	0								0	0	0	0.40063	1	3352	3352		30.318	2.2362	1		+		883	14937	503	507	891	891					0.0699740725999618
AEHLEKSSL	9	Unmodified	_AEHLEKSSL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2655029296875	2	507.266739	1012.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.435	1	20.435	19.935	20.935	0								0	0	0	0.11736	1	5468	5468		67.494	10.773	1				884	1637	504	508	892	892					0.013165622009523759
AEHLEKSSL	9	Unmodified	_AEHLEKSSL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2662048339844	2	507.266739	1012.51892	0.89035	0.00045164	-1.1326	-0.00057451	-0.24221	-0.00012286	507.26601609980014	20.752	0.11385	20.752	20.668	20.782	0					4	2	2	0	0	0	0.02429	1	6488	6488		114.89	27.198	1	111880			885	1637	504	508	893	893					0.013165622009523759
AEHLEKSSL	9	Unmodified	_AEHLEKSSL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2667541503906	2	507.266739	1012.51892	3.8	0.0019276	-3.8019	-0.0019286	-0.0019219	-9.7493E-07	507.26460714776437	20.452	0.11463	20.452	20.372	20.487	0					5	3	2	0	0	0	0.24334	1	5722	5722		56.434	1.6575	1	49145			886	1637	504	508	894	894					0.013165622009523759
AEHLEKSSL	9	Unmodified	_AEHLEKSSL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2666931152344	2	507.266739	1012.51892	-0.17799	-9.029E-05	0.40475	0.00020532	0.22676	0.00011503	507.26665947972003	20.65	0.16784	20.65	20.591	20.759	0					8	3	3	0	0	0	0.026538	1	6605	6605		112.41	13.782	1	346690			887	1637	504	508	895	895					0.013165622009523759
AEHPGTRL	8	Unmodified	_AEHPGTRL_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7356872558594	2	440.735409	879.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.695	1	17.695	17.195	18.195	0								0	0	0	1.7419	1	5039	5039		45.952	8.9235	1				888	5607	505	509	896	896					0.0117146092341045
AEHPIKISY	9	Unmodified	_AEHPIKISY_					0	0	0		ENSG00000125780|ENST00000381458|TGM3	ENSG00000125780|ENST00000381458|TGM3	ENSG00000125780|ENST00000381458|TGM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.286865234375	2	529.287474	1056.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.189	1	30.189	29.689	30.689	0								0	0	0	0.28996	1	9891	9891		37.159	0.71236	1				889	3436	506	510	897	897					0.03437742960295509
AEHQTFINF	9	Unmodified	_AEHQTFINF_					0	0	0			REV__nc|ENSG00000143322|P42684-8|ABL2	REV__nc|ENSG00000143322|P42684-8|ABL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.76904296875	2	553.766906	1105.51926	1.4133	0.00078262	0.43234	0.00023941	1.8456	0.001022	553.7671965225866	35.941	0.42095	35.941	35.804	36.225	0					44	20	3	0	0	0	0.4966	1	11755	11755		32.812	2.3088	1	343560	+		890	21049	507	511	898	898					-0.029280180792056854
AEHWCSLLK	9	Unmodified	_AEHWCSLLK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7763061523438	2	543.773677	1085.5328	4.8057	0.0026132	-0.094542	-5.1409E-05	4.7112	0.0025618	543.7735629676918	13.704	0.099047	13.704	13.662	13.761	0					10	5	3	0	0	0	0.21263	1	2851	2851		53.351	14.545	1	208600			891	11716	508	512	899	899					-0.006544835716113084
AEHYTETAL	9	Unmodified	_AEHYTETAL_					0	0	0		ENST00000513367.1_1_6:35855779-35888866:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-4|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1	ENST00000513367.1_1_6:35855779-35888866:-|nuORF	ENST00000513367.1_1_6:35855779-35888866:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7431640625	2	517.743096	1033.47164	0.047482	2.4584E-05	0.19848	0.00010276	0.24596	0.00012735	517.7431531554221	28.04	0.25493	28.04	27.953	28.208	0					9	6	2	0	0	0	0.26904	1	9871	9871		53.351	0	1	431230			892	1914	509	513	900	900					-0.04375717070047358
AEIAEIARL	9	Unmodified	_AEIAEIARL_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2866516113281	2	493.287474	984.560395	0.86656	0.00042746	-1.5114	-0.00074553	-0.64479	-0.00031807	493.2869848348698	41.481	0.16824	41.481	41.4	41.568	0					7	4	2	0	0	0	0.24334	1	16498	16498		56.434	5.2411	1	66041			893	1942	510	514	901	901					0.06749742960278127
AEIAKAEL	8	Unmodified	_AEIAKAEL_					0	0	0		ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7422180175781	2	422.742368	843.470183	-0.34498	-0.00014584	-0.041011	-1.7337E-05	-0.38599	-0.00016317	422.74241466409245	27.874	0.26285	27.874	27.763	28.026	0					12	5	3	0	0	0	0.24383	1	10038	10038		112.41	16.596	1	592740			894	2987	511	515	902	902					0.04218693631844417
AEIASQHL	8	Unmodified	_AEIASQHL_					0	0	0		nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7291564941406	2	434.729792	867.445031	0.21124	9.1833E-05	-0.64064	-0.0002785	-0.4294	-0.00018667	434.7295137608693	24.775	0.45811	24.775	24.541	24.999	0					33	13	3	0	0	0	0.37378	1	7290	7290		73.975	2.5968	1	664500			895	6403	512	516	903	903					0.006006388292917109
AEIAVGSRI	9	Unmodified	_AEIAVGSRI_					0	0	0		ENST00000434764.1_1_2:105486345-105489033:-|nuORF	ENST00000434764.1_1_2:105486345-105489033:-|nuORF	ENST00000434764.1_1_2:105486345-105489033:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.26629638671875	2	458.266542	914.51853	0.78882	0.00036149	-0.8738	-0.00040043	-0.084976	-3.8942E-05	458.2660021043285	19.441	0.32162	19.441	19.262	19.584	0					13	7	4	0	0	0	0.07136	1	5878	5878		87.696	13.441	1	643150			896	9520	513	517	904	904					0.05785187271760606
AEIDAHLV	8	Unmodified	_AEIDAHLV_					0	0	0		ENSG00000100902|ENST00000261479|PSMA6;ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6	ENSG00000100902|ENST00000261479|PSMA6	ENSG00000100902|ENST00000261479|PSMA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2322998046875	2	434.232168	866.449782	0.69718	0.00030274	-0.67502	-0.00029312	0.022157	9.6215E-06	434.2318937130267	34.415	0.28579	34.415	34.219	34.505	0					13	7	3	0	0	0	0.34985	1	12796	12796		76.847	16.553	1	364200			897	2072	514	518	905	905					0.011215229720505704
AEIDAHLV	8	Unmodified	_AEIDAHLV_					0	0	0		ENSG00000100902|ENST00000261479|PSMA6;ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6	ENSG00000100902|ENST00000261479|PSMA6	ENSG00000100902|ENST00000261479|PSMA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.2320861816406	2	434.232168	866.449782	-0.51289	-0.00022271	0.26814	0.00011643	-0.24475	-0.00010628	434.2323060864568	34.353	0.16375	34.353	34.245	34.409	0					8	3	3	0	0	0	0.54629	1	13148	13148		55.504	5.4797	1	693050			898	2072	514	518	906	906					0.011215229720505704
AEIDIEAKKAW	11	Unmodified	_AEIDIEAKKAW_					0	0	0			REV__CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant	REV__CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	637.3414916992188	2	637.342978	1272.6714	-0.51977	-0.00033127	-1.5252	-0.00097208	-2.045	-0.0013033	637.341862863837	11.422	0.14963	11.422	11.374	11.524	0					11	7	2	0	0	0	0.51875	1	2216	2216		42.864	1.4377	1	92303	+		899	12459	515	519	907	907					0.04597337877703467
AEIEERSAI	9	Unmodified	_AEIEERSAI_					0	0	0			REV__ENSG00000116221|ENST00000360840|MRPL37	REV__ENSG00000116221|ENST00000360840|MRPL37	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2640686035156	2	509.264196	1016.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.682	1	30.682	30.182	31.182	0								0	0	0	0.28666	1	10478	10478		37.812	4.9991	1		+		900	14140	516	520	908	908					0.006242583383254896
AEIEGLKGQ	9	Unmodified	_AEIEGLKGQ_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__REFSEQ:XP_092267;ENST00000562317.1_1_16:78082520-78083381:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7556457519531	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.013	1	25.013	24.513	25.513	0								0	0	0	0.088368	1	7889	7889		75.043	5.4157	1			+	901	11643	517	521	909	909					0.023451771722420744
AEIEGLKGQ	9	Unmodified	_AEIEGLKGQ_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__REFSEQ:XP_092267;ENST00000562317.1_1_16:78082520-78083381:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7556457519531	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.132	1	25.132	24.632	25.632	0								0	0	0	0.095784	1	8761	8761		72.879	3.2516	1			+	902	11643	517	521	910	910					0.023451771722420744
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	586.3258056640625	2	586.325119	1170.63569	0.32274	0.00018923	0.54353	0.00031869	0.86627	0.00050792	586.3255519657592	21.838	0.1208	21.838	21.794	21.915	0					5	3	2	0	0	0	0.074075	1	6083	6083		96.034	36.103	1	128170		+	903	11643	518	522	911	911					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.3253784179688	2	586.325119	1170.63569	0.090981	5.3344E-05	-0.61488	-0.00036052	-0.5239	-0.00030718	586.3252833995318	22.157	0.18993	22.157	22.061	22.251	0					11	4	4	0	0	0	0.035268	1	7168	7168		112.3	34.032	1	1037300		+	904	11643	518	522	912	912					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.325439453125	2	586.325119	1170.63569	-0.32812	-0.00019238	1.2207	0.00071574	0.89261	0.00052336	586.3259680518258	21.868	0.1423	21.868	21.814	21.956	0					9	4	3	0	0	0	0.38515	1	6370	6370		53.089	19.167	1	114870		+	905	11643	518	522	913	913					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2191162109375	3	391.219172	1170.63569	0.43528	0.00017029	-0.55137	-0.0002157	-0.11609	-4.5415E-05	391.2189656465564	22.045	0.31369	22.045	21.939	22.253	0					10	6	3	0	0	0	0.74306	1	7414	7414		47.228	23.705	1	1721800		+	906	11643	518	522	914	914					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.3247680664062	2	586.325119	1170.63569	-1.7366	-0.0010182	2.0824	0.0012209	0.34579	0.00020274	586.3260949399131	21.937	0.15142	21.937	21.837	21.988	0					6	3	2	0	0	0	0.13966	1	6458	6458		81.525	25.091	1	203180		+	907	11643	518	522	915	915					0.057193004207192644
AEIEHHEM	8	Unmodified	_AEIEHHEM_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2157287597656	2	498.216192	994.41783	-0.054479	-2.7142E-05	-1.2063	-0.00060101	-1.2608	-0.00062815	498.2158825565253	19.159	0.10978	19.159	19.086	19.196	0					7	3	3	0	0	0	0.37378	1	4902	4902		73.975	31.5	1	90846			908	11616	519	523	916	916					-0.07960212773400599
AEIEHHEM	8	Unmodified	_AEIEHHEM_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2159118652344	2	498.216192	994.41783	-0.2596	-0.00012934	-0.16672	-8.3065E-05	-0.42633	-0.0002124	498.21604986450814	19.478	0.31633	19.478	19.389	19.706	0					14	7	3	0	0	0	0.24915	1	5888	5888		102.77	40.666	1	921860			909	11616	519	523	917	917					-0.07960212773400599
AEIEHHEM	8	Unmodified	_AEIEHHEM_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.21563720703125	2	498.216192	994.41783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.164	1	19.164	18.664	19.664	0								0	0	0	1.7419	1	5142	5142		76.847	26.822	1				910	11616	519	523	918	918					-0.07960212773400599
AEIEHHEM	8	Unmodified	_AEIEHHEM_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2159729003906	2	498.216192	994.41783	-0.69982	-0.00034866	0.37468	0.00018667	-0.32514	-0.00016199	498.216334325339	19.404	0.16564	19.404	19.297	19.463	0					7	3	3	0	0	0	0.5676	1	6139	6139		53.351	5.4358	1	260540			911	11616	519	523	919	919					-0.07960212773400599
AEIEIMKKL	9	Unmodified	_AEIEIMKKL_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.87908935546875	3	358.879099	1073.61547	0.48437	0.00017383	-0.43932	-0.00015766	0.04505	1.6168E-05	358.8789629597014	35.637	0.15705	35.637	35.594	35.751	0					6	4	2	0	0	0	0.50461	1	13385	13385		31.53	0	1	253050			912	1516	520	524	920	920					0.08160413436553426
AEIEQYRL	8	Unmodified	_AEIEQYRL_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2696838378906	2	511.269281	1020.52401	1.0012	0.00051189	-2.172	-0.0011105	-1.1708	-0.00059859	511.26786839765816	35.243	0.322	35.243	35.033	35.355	0					11	8	2	0	0	0	0.3049	1	13223	13223		82.241	18.033	1	181760			913	4125	521	525	921	921					0.0145686606357458
AEIEQYRL	8	Unmodified	_AEIEQYRL_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2691650390625	2	511.269281	1020.52401	-0.38272	-0.00019567	-0.21883	-0.00011188	-0.60155	-0.00030755	511.2692337941645	35.041	0.16549	35.041	34.988	35.154	0					13	7	2	0	0	0	0.41	1	11846	11846		69.628	11.398	1	132610			914	4125	521	525	922	922					0.0145686606357458
AEIEQYRL	8	Unmodified	_AEIEQYRL_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.269287109375	2	511.269281	1020.52401	1.2219	0.00062471	-2.2052	-0.0011274	-0.9833	-0.00050273	511.268199312896	35.253	0.54565	35.253	34.998	35.544	0					32	15	3	0	0	0	0.25143	1	13656	13656		98.629	36.522	1	899310			915	4125	521	525	923	923					0.0145686606357458
AEIEQYRL	8	Unmodified	_AEIEQYRL_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2699890136719	2	511.269281	1020.52401	0.35817	0.00018312	0.65567	0.00033522	1.0138	0.00051834	511.26962449806	35.027	0.17399	35.027	34.952	35.126	0					8	5	2	0	0	0	0.42778	1	12456	12456		67.494	17.469	1	94207			916	4125	521	525	924	924					0.0145686606357458
AEIEQYRL	8	Unmodified	_AEIEQYRL_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.26910400390625	2	511.269281	1020.52401	1.3955	0.0007135	-3.6232	-0.0018524	-2.2276	-0.0011389	511.26724086202233	35.17	0.86321	35.17	34.62	35.484	0					27	17	3	0	0	0	0.30066	1	13565	13565		82.75	20.643	1	1223500			917	4125	521	525	925	925					0.0145686606357458
AEIKGKFCP	9	Unmodified	_AEIKGKFCP_					0	0	0			REV__nc|ENSG00000188707|Q96FA7|ZBED10P	REV__nc|ENSG00000188707|Q96FA7|ZBED10P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.764892578125	2	496.76532	991.516088	0.71661	0.00035599	-2.1886	-0.0010872	-1.472	-0.00073125	496.7637306490257	36.488	0.3051	36.488	36.38	36.685	0					15	8	3	0	0	0	0.25716	1	13769	13769		54.776	4.7518	1	88459	+		918	21169	522	526	926	926					0.01999015542446614
AEIKIQGL	8	Unmodified	_AEIKIQGL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.D1169Ifs*15|1|0.38|ENSG00000129003|chr15:61962469-61962469|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2659912109375	2	436.26601	870.517468	0.64988	0.00028352	-1.1717	-0.00051118	-0.52184	-0.00022766	436.26552441987326	37.769	0.12141	37.769	37.705	37.826	0					7	4	2	0	0	0	0.35045	1	14346	14346		76.774	10.345	1	90755			919	3575	523	527	927	927					0.07702972902859528
AEIKIQGL	8	Unmodified	_AEIKIQGL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.D1169Ifs*15|1|0.38|ENSG00000129003|chr15:61962469-61962469|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2663269042969	2	436.26601	870.517468	-0.54389	-0.00023728	0.96857	0.00042256	0.42468	0.00018527	436.2664083440156	37.665	0.15965	37.665	37.565	37.725	0					5	3	2	0	0	0	0.37144	1	14755	14755		74.255	10.949	1	144500			920	3575	523	527	928	928					0.07702972902859528
AEIKRKCRQK	10	Unmodified	_AEIKRKCRQK_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.58233642578125	3	420.583679	1258.72921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.805	1	10.805	10.305	11.305	0								0	0	0	0.4201	1	2089	2089		4.6126	0.99349	1		+		921	13274	524	528	929	929					0.11019321322146425
AEIKVREA	8	Unmodified	_AEIKVREA_					0	0	0		nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000049283|Q9H201-2|EPN3;ENST00000495155.5_1_17:19186396-19216987:+|nuORF;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000176177|ENST00000325157|ENTHD1;ENSG00000049283|ENST00000268933|EPN3;ENSG00000072134|ENST00000314728|EPN2	nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2665710449219	2	458.266542	914.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.377	1	19.377	18.877	19.877	0								0	0	0	1.7419	1	5977	5977		107.01	5.4068	1				922	11432	525	529	930	930					0.05785187271760606
AEILKNEAY	9	Unmodified	_AEILKNEAY_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7776489257812	2	525.776939	1049.53933	1.627	0.00085544	4.3149	0.0022687	5.9419	0.0031241	525.779607248014	38.585	0.82844	38.585	38.251	39.079	0					26	17	2	0	0	0	0.24334	1	15193	15193		49.442	1.7842	1	761020			923	7866	526	530	931	931					0.016537328607682866
AEILMQKL	8	Unmodified	_AEILMQKL_					0	0	0		TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant	TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2751159667969	2	473.275521	944.536489	0.59644	0.00028228	-1.4993	-0.00070959	-0.90288	-0.00042731	473.2747045106742	39.061	0.18381	39.061	38.982	39.166	0					9	6	2	0	0	0	0.43813	1	15354	15354		66.429	16.405	1	99253			924	5062	527	531	932	932					0.06200186202261193
AEILQESRM	9	Unmodified	_AEILQESRM_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7737426757812	2	538.773874	1075.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.36	1	31.36	30.86	31.86	0								0	0	0	0.12732	1	10384	10384		65.157	18.7	1				925	6304	528	532	933	933					-0.0015510864241150557
AEILQESRM	9	Unmodified	_AEILQESRM_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7742919921875	2	538.773874	1075.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.594	1	31.594	31.094	32.094	0								0	0	0	0.00033844	1	11929	11929		131.62	66.151	1				926	6304	528	532	934	934					-0.0015510864241150557
AEILQESRM	9	Unmodified	_AEILQESRM_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7736206054688	2	538.773874	1075.53319	-1.4662	-0.00078996	2.8248	0.001522	1.3586	0.00073199	538.7749204566043	31.375	0.1876	31.375	31.287	31.475	0					9	4	3	0	0	0	0.13907	1	10809	10809		70.399	15.622	1	130890			927	6304	528	532	935	935					-0.0015510864241150557
AEILQESRM	9	Unmodified	_AEILQESRM_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.774169921875	2	538.773874	1075.53319	2.0375	0.0010977	-4.2198	-0.0022735	-2.1823	-0.0011758	538.771901701392	31.629	0.71576	31.629	31.454	32.17	0					26	14	2	0	0	0	0.099758	1	11826	11826		79.489	28.154	1	848840			928	6304	528	532	936	936					-0.0015510864241150557
AEILQESRM	9	Unmodified	_AEILQESRM_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7745361328125	2	538.773874	1075.53319	3.4008	0.0018323	-2.5497	-0.0013737	0.85116	0.00045858	538.7726031039444	31.555	0.36492	31.555	31.437	31.802	0					18	7	3	0	0	0	0.13907	1	11818	11818		70.399	6.8647	1	1031900			929	6304	528	532	937	937					-0.0015510864241150557
AEIQGNINKV	10	Unmodified	_AEIQGNINKV_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.3016357421875	2	543.301113	1084.58767	1.1507	0.00062519	-0.83939	-0.00045604	0.31135	0.00016916	543.300842786625	26.761	0.13888	26.761	26.68	26.819	0					9	5	2	0	0	0	0.09653	1	8158	8158		96.034	23.154	1	158050			930	4398;4684	529	533	938	938					0.04876226500641678
AEIQGNINKV	10	Unmodified	_AEIQGNINKV_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.301513671875	2	543.301113	1084.58767	0.33639	0.00018276	0.13946	7.577E-05	0.47585	0.00025853	543.3012582588913	27.007	0.29335	27.007	26.875	27.169	0					12	7	3	0	0	0	0.03454	1	9371	9371		114.89	29.979	1	968300			931	4398;4684	529	533	939	939					0.04876226500641678
AEIQGNINKV	10	Unmodified	_AEIQGNINKV_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.3032836914062	2	543.301113	1084.58767	-0.18196	-9.8857E-05	1.8304	0.00099447	1.6485	0.00089561	543.3020004485174	26.765	0.14102	26.765	26.678	26.819	0					7	5	2	0	0	0	0.19191	1	8446	8446		80.455	27.518	1	93539			932	4398;4684	529	533	940	940					0.04876226500641678
AEIQGNINKV	10	Unmodified	_AEIQGNINKV_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.301513671875	2	543.301113	1084.58767	0.32032	0.00017403	-0.073838	-4.0116E-05	0.24648	0.00013391	543.3011918764248	27.001	0.20835	27.001	26.895	27.104	0					7	4	2	0	0	0	0.11048	1	9722	9722		93.598	3.2278	1	734410			933	4398;4684	529	533	941	941					0.04876226500641678
AEIRHVLVT	9	Unmodified	_AEIRHVLVT_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.3091430664062	2	519.308741	1036.60293	0.18658	9.6893E-05	1.482	0.00076964	1.6686	0.00086653	519.309475869349	25.419	0.22197	25.419	25.346	25.568	0					17	8	3	0	0	0	0.24334	1	7903	7903		56.434	3.0823	1	341500			934	11453	530	534	942	942					0.08609138088513646
AEIRHVLVTL	10	Unmodified	_AEIRHVLVTL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.8518676757812	2	575.850773	1149.68699	-0.093224	-5.3683E-05	0.59564	0.000343	0.50241	0.00028931	575.8509491217202	36.358	0.39927	36.358	36.237	36.636	0					20	11	2	0	0	0	0.22691	1	13679	13679		76.17	10.704	1	599090			935	11453	531	535	943	943					0.11813669185426079
AEIRHVLVTL	10	Unmodified	_AEIRHVLVTL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.3531494140625	2	575.850773	1149.68699	-1.558	-0.00089719	2.6979	0.0015536	1.1399	0.00065639	575.8520632075737	36.123	0.22013	36.123	36.031	36.251	0					12	7	2	0	0	0	0.50881	1	12895	12895		44.377	13.874	1	79468			936	11453	531	535	944	944					0.11813669185426079
AEIRVHTV	8	Unmodified	_AEIRVHTV_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.766357421875	2	462.766709	923.518865	-0.7742	-0.00035827	-0.22249	-0.00010296	-0.99669	-0.00046123	462.76672136086404	22.261	0.16314	22.261	22.168	22.331	0					11	5	3	0	0	0	0.5535	1	6516	6516		54.776	10.66	1	315660			937	4007	532	536	945	945					0.0540460699162395
AEIRVHTV	8	Unmodified	_AEIRVHTV_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7665100097656	2	462.766709	923.518865	0.77952	0.00036074	-1.3436	-0.00062178	-0.56408	-0.00026104	462.76610152329835	22.43	0.26826	22.43	22.321	22.589	0					14	5	4	0	0	0	0.42778	1	7468	7468		67.494	6.5217	1	2334900			938	4007	532	536	946	946					0.0540460699162395
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7786560058594	2	480.274032	958.533512	0.67387	0.00032364	0.68243	0.00032776	1.3563	0.0006514	480.27351729695926	40.164	0.28967	40.164	40.079	40.369	0					26	11	3	0	0	0	0.11898	1	15855	15855		75.043	3.7476	1	305640			939	3910	533	537	947	947					0.05258634349092972
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.27362060546875	2	480.274032	958.533512	2.3224	0.0011154	0.61939	0.00029747	2.9418	0.0014129	480.2727919017329	40.142	0.49864	40.142	39.987	40.486	0					24	11	4	0	0	0	0.18416	1	15896	15896		63.534	2.5619	1	404890			940	3910	533	537	948	948					0.05258634349092972
AEIVASSVIL	10	Unmodified	_AEIVASSVIL_					0	0	0		ENST00000562017.1_1_16:56643060-56643138:+|nuORF	ENST00000562017.1_1_16:56643060-56643138:+|nuORF	ENST00000562017.1_1_16:56643060-56643138:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3026123046875	2	501.297507	1000.58046	2.9235	0.0014655	4.4299	0.0022207	7.3534	0.0036863	501.299521786364	41.472	0.45845	41.472	41.256	41.715	0					24	11	3	0	0	0	0.26198	1	16471	16471		71.877	7.6702	1	399270			941	10715	534	538	949	949					0.08019493900246744
AEIVEKKNV	9	Unmodified	_AEIVEKKNV_					0	0	0			REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3002319335938	2	515.300581	1028.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.079	1	30.079	29.579	30.579	0								0	0	0	0.23445	1	9850	9850		45.972	1.5951	1		+		942	19513	535	539	950	950					0.07346012131756652
AEIVTKTI	8	Unmodified	_AEIVTKTI_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7655029296875	2	437.765843	873.517133	-0.9448	-0.0004136	1.0202	0.00044659	0.075353	3.2987E-05	437.76608004556397	28.049	0.13917	28.049	27.987	28.126	0					6	5	2	0	0	0	0.39125	1	9012	9012		71.877	5.4482	1	58584			943	4594	536	540	951	951					0.0753155318300287
AEIVTKTI	8	Unmodified	_AEIVTKTI_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7655029296875	2	437.765843	873.517133	-3.0909	-0.0013531	2.8596	0.0012518	-0.23127	-0.00010124	437.7670007066853	28.1	0.12564	28.1	28.02	28.145	0					5	3	2	0	0	0	0.32597	1	9291	9291		79.713	13.283	1	64679			944	4594	536	540	952	952					0.0753155318300287
AEIYGVTHT	9	Unmodified	_AEIYGVTHT_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7685297-7685959:-|nuORF;ENST00000600230.1_1_19:7685297-7686162:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.74774169921875	2	495.748182	989.481811	0.73436	0.00036406	-1.1797	-0.00058484	-0.44535	-0.00022078	495.7473280532683	28.606	0.17583	28.606	28.526	28.702	0					6	4	2	0	0	0	0.17854	1	10141	10141		64.207	14.766	1	195180			945	1569	537	541	953	953					-0.013351093448136453
AEKACGVCPL	10	Unmodified	_AEKACGVCPL_					0	0	0		CON__Q29RQ1	CON__Q29RQ1	CON__Q29RQ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2235412597656	2	495.740988	989.467423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.527	1	19.527	19.027	20.027	0								0	0	0	0.38322	1	5321	5321		35.618	2.8059	1			+	946	652	538	542	954	954					-0.027732210889780617
AEKAFQEGIAK	11	Unmodified	_AEKAFQEGIAK_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.3211669921875	2	596.322045	1190.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.225	1	18.225	17.725	18.725	0								0	0	0	0.45003	1	4505	4505		7.3997	0	1				947	277	539	543	955	955					0.04184782189190628
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.7369079589844	2	425.737086	849.459619	0.29849	0.00012708	-0.65767	-0.00027999	-0.35918	-0.00015292	425.73668837612325	30.68	0.1439	30.68	30.61	30.754	0					11	6	2	0	0	0	0.34592	1	9795	9795		77.318	10.888	1	90670			948	2554	540	544	956	956					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.7367858886719	2	425.737086	849.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.731	1	30.731	30.231	31.231	0								0	0	0	1.7419	1	10119	10119		67.494	6.5217	1				949	2554	540	544	957	957					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.73699951171875	2	425.737086	849.459619	0.90344	0.00038463	-1.2758	-0.00054316	-0.37238	-0.00015854	425.7366329382662	30.99	0.2385	30.99	30.854	31.093	0					9	5	2	0	0	0	0.22624	1	11654	11654		125.81	14.166	1	489220			950	2554	540	544	958	958					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.7366943359375	2	425.737086	849.459619	-0.05465	-2.3267E-05	-1.0287	-0.00043794	-1.0833	-0.00046121	425.7367591582679	30.767	0.18885	30.767	30.654	30.842	0					9	5	2	0	0	0	0.36488	1	10512	10512		75.043	12.936	1	103130			951	2554	540	544	959	959					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.73681640625	2	425.737086	849.459619	-0.38601	-0.00016434	-0.042044	-1.79E-05	-0.42805	-0.00018224	425.7370328083797	30.937	0.21147	30.937	30.831	31.043	0					10	4	3	0	0	0	0.46013	1	11523	11523		64.207	12.872	1	154500			952	2554	540	544	960	960					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.73681640625	2	425.737086	849.459619	1.0535	0.00044851	-1.8367	-0.00078195	-0.7832	-0.00033344	425.7363801058856	30.967	0.60926	30.967	30.517	31.126	0					23	12	4	0	0	0	0.24999	1	11514	11514		101.25	29.375	1	712980			953	2554	540	544	961	961					0.028867109774296296
AEKALFRAL	9	Unmodified	_AEKALFRAL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56	ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.2061767578125	3	340.206315	1017.59712	0.5111	0.00017388	-0.61619	-0.00020963	-0.10509	-3.5752E-05	340.20614215659896	33.081	0.33088	33.081	33.009	33.339	0					20	9	3	0	0	0	0.095583	1	12207	12207		80.455	29.262	1	576920			954	1277;2114	541	545	962	962					0.08902039576821608
AEKALFRAL	9	Unmodified	_AEKALFRAL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56	ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	340.2062683105469	3	340.206315	1017.59712	-1.9353	-0.00065839	1.7541	0.00059677	-0.18112	-6.1619E-05	340.20696316020116	32.886	0.17345	32.886	32.789	32.963	0					7	4	2	0	0	0	0.44593	1	11488	11488		37.812	4.9991	1	80439			955	1277;2114	541	545	963	963					0.08902039576821608
AEKALFRAL	9	Unmodified	_AEKALFRAL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56	ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56	ENSG00000055044|ENST00000264279|NOP58	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.2062072753906	3	340.206315	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.062	1	33.062	32.562	33.562	0								0	0	0	0.10319	1	12526	12526		70.816	27.952	1				956	1277;2114	541	545	964	964					0.08902039576821608
AEKALGKAA	9	Unmodified	_AEKALGKAA_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.7557067871094	2	429.75581	857.497067	0.80573	0.00034627	-0.86052	-0.00036981	-0.054785	-2.3544E-05	429.75542086770605	14.905	0.088665	14.905	14.863	14.951	0					4	2	2	0	0	0	0.085655	1	3750	3750		82.75	10.873	1	184490			957	1110	542	546	965	965					0.06261802243022885
AEKALGKAA	9	Unmodified	_AEKALGKAA_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7550048828125	2	429.75581	857.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.697	1	14.697	14.197	15.197	0								0	0	0	0.27939	1	3162	3162		39.253	0.44669	1				958	1110	542	546	966	966					0.06261802243022885
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	384.536376953125	3	384.536278	1150.587	0.54061	0.00020788	-0.37888	-0.00014569	0.16173	6.219E-05	384.5360547200216	21.441	0.083267	21.441	21.386	21.469	0					5	3	2	0	0	0	0.63224	1	5913	5913		42.338	12.787	1	54130			959	6048	543	547	967	967					0.01773387060939058
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.3003540039062	2	576.300778	1150.587	0.93439	0.00053849	-0.94965	-0.00054728	-0.01526	-8.7944E-06	576.3001902944934	21.436	0.20258	21.436	21.377	21.579	0					18	8	3	0	0	0	0.21778	1	5900	5900		77.288	15.523	1	673900			960	6048	543	547	968	968					0.01773387060939058
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.3007202148438	2	576.300778	1150.587	-0.085727	-4.9405E-05	0.54951	0.00031668	0.46378	0.00026728	576.3009042496334	21.775	0.27796	21.775	21.682	21.96	0					20	6	4	0	0	0	0.019305	1	6958	6958		125.68	13.271	1	4569500			961	6048	543	547	969	969					0.01773387060939058
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3010864257812	2	576.300778	1150.587	-0.14378	-8.2863E-05	0.53531	0.0003085	0.39152	0.00022563	576.300985945842	21.483	0.16694	21.483	21.404	21.571	0					10	5	3	0	0	0	0.03454	1	6165	6165		114.89	45.267	1	455990			962	6048	543	547	970	970					0.01773387060939058
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.301025390625	2	576.300778	1150.587	-0.31711	-0.00018275	0.74407	0.00042881	0.42696	0.00024606	576.3011486332582	21.651	0.26596	21.651	21.592	21.858	0					14	5	4	0	0	0	0.0032625	1	7220	7220		171.33	55.836	1	1815000			963	6048	543	547	971	971					0.01773387060939058
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.301025390625	2	576.300778	1150.587	-1.5766	-0.00090859	2.7068	0.0015599	1.1302	0.00065133	576.3020566017152	21.562	0.16357	21.562	21.465	21.629	0					9	4	3	0	0	0	0.034064	1	6262	6262		115.23	24.631	1	336180			964	6048	543	547	972	972					0.01773387060939058
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;TUBA1A|p.I276V|1|0.05|ENSG00000167552|chr12:49185540-49185540|T/C|missense_variant;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.7723999023438	2	544.772188	1087.52982	1.1803	0.000643	-0.83191	-0.0004532	0.3484	0.0001898	544.7715345384593	20.278	0.34056	20.278	20.092	20.433	0					23	11	4	0	0	0	0.0093724	1	5401	5401		142.36	56.499	1	1406100			965	3319;10430	544	548	973	973					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;TUBA1A|p.I276V|1|0.05|ENSG00000167552|chr12:49185540-49185540|T/C|missense_variant;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7724609375	2	544.772188	1087.52982	0.38147	0.00020781	-0.38173	-0.00020795	-0.0002597	-1.4148E-07	544.7717812015053	20.65	1.0134	20.65	20.419	21.433	0					37	23	4	0	0	0	0.0034376	1	6430	6430		166.07	56.593	1	10423000			966	3319;10430	544	548	974	974					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;TUBA1A|p.I276V|1|0.05|ENSG00000167552|chr12:49185540-49185540|T/C|missense_variant;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.7734375	2	544.772188	1087.52982	0.49647	0.00027046	0.45957	0.00025036	0.95604	0.00052082	544.7724068933857	20.329	0.24279	20.329	20.26	20.503	0					20	7	4	0	0	0	0.0071744	1	5648	5648		148.69	38.57	1	2367400			967	3319;10430	544	548	975	975					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;TUBA1A|p.I276V|1|0.05|ENSG00000167552|chr12:49185540-49185540|T/C|missense_variant;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.7735595703125	2	544.772188	1087.52982	1.1026	0.00060064	-0.1154	-6.2865E-05	0.98716	0.00053778	544.7721906024289	20.399	0.30214	20.399	20.31	20.612	0					16	7	4	0	0	0	0.052435	1	5720	5720		94.409	23.593	1	811510			968	3319;10430	544	548	976	976					-0.010440354247748473
AEKDGARVM	9	Unmodified	_AEKDGARVM_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7474670410156	2	488.747659	975.480765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.901	1	16.901	16.401	17.401	0								0	0	0	0.16453	1	4925	4925		56.434	14.038	1				969	11546	545	549	977	977					-0.007956469853638737
AEKEFNETM	9	Unmodified	_AEKEFNETM_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7431030273438	2	549.742239	1097.46993	0.34697	0.00019075	0.67645	0.00037187	1.0234	0.00056262	549.7425209387146	27.498	0.11921	27.498	27.442	27.561	0					7	4	2	0	0	0	0.11411	1	8773	8773		76.17	17.94	1	67427			970	1386	546	550	978	978					-0.07491094150327626
AEKELHEKF	9	Unmodified	_AEKELHEKF_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11;ENST00000481072.1_1_X:118763279-118767388:-|nuORF;ENST00000467310.1_1_X:118753883-118767379:-|nuORF;ENST00000512575.5_1_4:77871042-77955662:+|nuORF	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.5329895019531	3	377.532868	1129.57677	-0.4236	-0.00015992	0.94358	0.00035623	0.51998	0.00019631	377.5332177574524	19.799	0.22001	19.799	19.741	19.961	0					7	4	3	0	0	0	0.31937	1	6199	6199		48.602	3.5793	1	660390			971	3411	547	551	979	979					0.017168241263561868
AEKELVQSL	9	Unmodified	_AEKELVQSL_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2;ENST00000478055.1_1_5:131553347-131562829:-|nuORF	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7846374511719	2	508.784764	1015.55498	-0.3985	-0.00020275	0.23516	0.00011965	-0.16334	-8.3106E-05	508.78487102417273	33.599	0.2452	33.599	33.508	33.753	0					19	6	4	0	0	0	0.014413	1	12859	12859		131.62	18.205	1	1426700			972	1497	548	552	980	980					0.04782019377796587
AEKEMHNL	8	Unmodified	_AEKEMHNL_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2342224121094	2	486.234384	970.454216	0.6878	0.00033443	-1.0553	-0.00051312	-0.3675	-0.00017869	486.23387129882684	18.765	0.13314	18.765	18.683	18.816	0					8	3	3	0	0	0	0.25143	1	5557	5557		98.629	13.714	1	652600			973	2135	549	553	981	981					-0.032193358767017344
AEKEMHNL	8	Unmodified	_AEKEMHNL_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2342529296875	2	486.234384	970.454216	-0.087374	-4.2484E-05	-0.40838	-0.00019857	-0.49575	-0.00024105	486.23418357807543	18.669	0.11668	18.669	18.611	18.728	0					6	2	3	0	0	0	0.25149	1	5783	5783		98.582	21.808	1	264560			974	2135	549	553	982	982					-0.032193358767017344
AEKEMHNL	8	Unmodified	_AEKEMHNL_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2341613769531	2	486.234384	970.454216	-0.55321	-0.00026899	0.091802	4.4637E-05	-0.4614	-0.00022435	486.23434120858576	18.705	0.16339	18.705	18.621	18.784	0					7	3	3	0	0	0	0.24806	1	5648	5648		104.75	25.296	1	235240			975	2135	549	553	983	983					-0.032193358767017344
AEKEVMEEQM	10	Unmodified	_AEKEVMEEQM_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	612.2694091796875	2	612.267764	1222.52097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.971	1	27.971	27.471	28.471	0								0	0	0	0.38825	1	8684	8684		34.087	6.2043	1				976	7312	550	554	984	984					-0.08138513167773453
AEKGKPVTL	9	Unmodified	_AEKGKPVTL_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7841796875	2	471.784567	941.554582	-0.1237	-5.836E-05	-0.43712	-0.00020623	-0.56082	-0.00026459	471.7843381242189	19.487	0.51315	19.487	19.38	19.894	0					15	10	2	0	0	0	0.022525	1	6180	6180		117.81	10.804	1	878160			977	2426	551	555	985	985					0.08146644448606821
AEKGKPVTL	9	Unmodified	_AEKGKPVTL_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7843322753906	2	471.784567	941.554582	-0.17923	-8.4559E-05	-0.41203	-0.00019439	-0.59127	-0.00027895	471.78446098848843	19.377	0.18946	19.377	19.247	19.437	0					6	4	2	0	0	0	0.076532	1	5240	5240		85.862	5.4072	1	127680			978	2426	551	555	986	986					0.08146644448606821
AEKGKPVTL	9	Unmodified	_AEKGKPVTL_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.783935546875	2	471.784567	941.554582	-0.55899	-0.00026372	-0.067178	-3.1694E-05	-0.62617	-0.00029542	471.7845020676814	19.5	0.26252	19.5	19.394	19.656	0					9	5	2	0	0	0	0.047855	1	6029	6029		96.034	28.54	1	1171300			979	2426	551	555	987	987					0.08146644448606821
AEKKEMKTI	9	Unmodified	_AEKKEMKTI_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3030395507812	2	539.302267	1076.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.804	1	15.804	15.304	16.304	0								0	0	0	0.25587	1	3674	3674		42.864	3.6114	1				980	5558	552	556	988	988					0.05474938914107952
AEKKEMKTI	9	Unmodified	_AEKKEMKTI_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3025512695312	2	539.302267	1076.58998	1.9443	0.0010485	-1.6332	-0.00088076	0.3111	0.00016778	539.3014751770719	16.022	0.16627	16.022	15.962	16.128	0					9	3	4	0	0	0	0.0067848	1	4512	4512		150.36	5.2059	1	526260			981	5558	552	556	989	989					0.05474938914107952
AEKKEMKTI	9	Unmodified	_AEKKEMKTI_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3030395507812	2	539.302267	1076.58998	2.0642	0.0011132	-1.3307	-0.00071766	0.73346	0.00039556	539.3014293700669	16.039	0.36826	16.039	15.78	16.149	0					11	7	2	0	0	0	0.34452	1	4374	4374		46.457	3.5925	1	663620			982	5558	552	556	990	990					0.05474938914107952
AEKKIEVVM	9	Unmodified	_AEKKIEVVM_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant;FRYL|p.L330*|1|0.33|ENSG00000075539|chr4:48602066-48602066|A/-|frameshift_variant;FRYL|p.L330Ffs*3|1|0.35|ENSG00000075539|chr4:48602065-48602066|-/A|frameshift_variant;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.799560546875	2	523.79936	1045.58417	1.7877	0.00093641	-1.7309	-0.00090667	0.056777	2.974E-05	523.7984601227658	26.719	0.51198	26.719	26.56	27.072	0					23	10	4	0	0	0	0.02953	1	9582	9582		109.48	24.563	1	3120400			983	1542;8502	553	557	991	991					0.06319840402443333
AEKKIEVVM	9	Unmodified	_AEKKIEVVM_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant;FRYL|p.L330*|1|0.33|ENSG00000075539|chr4:48602066-48602066|A/-|frameshift_variant;FRYL|p.L330Ffs*3|1|0.35|ENSG00000075539|chr4:48602065-48602066|-/A|frameshift_variant;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7996215820312	2	523.79936	1045.58417	1.1239	0.00058867	-1.0829	-0.00056725	0.04091	2.1428E-05	523.7987641603878	26.514	0.27772	26.514	26.426	26.704	0					15	6	3	0	0	0	0.11898	1	8538	8538		75.043	5.4157	1	360110			984	1542;8502	553	557	992	992					0.06319840402443333
AEKKIEVVM	9	Unmodified	_AEKKIEVVM_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant;FRYL|p.L330*|1|0.33|ENSG00000075539|chr4:48602066-48602066|A/-|frameshift_variant;FRYL|p.L330Ffs*3|1|0.35|ENSG00000075539|chr4:48602065-48602066|-/A|frameshift_variant;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7996826171875	2	523.79936	1045.58417	-1.2746	-0.00066762	2.1806	0.0011422	0.90603	0.00047458	523.8002572387599	26.503	0.22583	26.503	26.413	26.639	0					12	5	3	0	0	0	0.12834	1	8549	8549		72.879	3.2516	1	363130			985	1542;8502	553	557	993	993					0.06319840402443333
AEKKIEVVM	9	Unmodified	_AEKKIEVVM_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant;FRYL|p.L330*|1|0.33|ENSG00000075539|chr4:48602066-48602066|A/-|frameshift_variant;FRYL|p.L330Ffs*3|1|0.35|ENSG00000075539|chr4:48602065-48602066|-/A|frameshift_variant;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL;ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7994384765625	2	523.79936	1045.58417	1.6261	0.00085174	-1.9298	-0.0010108	-0.30369	-0.00015907	523.7984339979837	26.647	0.315	26.647	26.587	26.902	0					20	6	4	0	0	0	0.032383	1	9448	9448		106.68	26.97	1	2495800			986	1542;8502	553	557	994	994					0.06319840402443333
AEKKKSFGI	9	Unmodified	_AEKKKSFGI_					0	0	0		nc|ENSG00000153237|Q8NFR7-2|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5344543457031	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.839	1	48.839	48.339	49.339	0								0	0	0	0.36766	1	18437	18437		20.947	6.8098	1				987	11587	554	558	995	995					0.07810333339955378
AEKKNSILY	9	Unmodified	_AEKKNSILY_					0	0	0			REV__nc|ENSG00000006634|Q9UBU7-2|DBF4	REV__nc|ENSG00000006634|Q9UBU7-2|DBF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.3015747070312	2	533.300581	1064.58661	2.3265	0.0012407	-1.0951	-0.00058401	1.2314	0.00065672	533.299769961114	35.944	0.12675	35.944	35.865	35.991	0					6	3	2	0	0	0	0.1424	1	13534	13534		69.628	0.8408	1	73913	+		988	12670	555	559	996	996					0.056900121317767116
AEKKQTEQL	9	Unmodified	_AEKKQTEQL_					0	0	0		CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7936401367188	2	537.793121	1073.57169	1.8917	0.0010174	-0.80815	-0.00043462	1.0836	0.00058275	537.7926547710482	15.872	0.11115	15.872	15.818	15.93	0					6	2	3	0	0	0	0.04067	1	4439	4439		98.582	2.7668	1	898590			989	472	556	560	997	997					0.03784520263752711
AEKKSKAEL	9	Unmodified	_AEKKSKAEL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.29217529296875	2	502.292756	1002.57096	0.70636	0.0003548	-1.1965	-0.00060098	-0.4901	-0.00024618	502.2921279176152	13.747	0.089832	13.747	13.665	13.755	0					4	2	2	0	0	0	0.067603	1	3194	3194		72.879	0	1	188010			990	5139	557	561	998	998					0.06977725614717656
AEKKSKAEL	9	Unmodified	_AEKKSKAEL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2926025390625	2	502.292756	1002.57096	-0.52421	-0.00026331	0.33104	0.00016628	-0.19317	-9.7026E-05	502.2931583443941	13.679	0.15986	13.679	13.572	13.732	0					5	3	2	0	0	0	0.085309	1	3223	3223		66.962	20.99	1	91632			991	5139	557	561	999	999					0.06977725614717656
AEKKTKQTL	9	Unmodified	_AEKKTKQTL_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000556925.5_1_14:50285084-50295410:-|nuORF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.8141479492188	2	523.813856	1045.61316	0.090387	4.7346E-05	0.12896	6.755E-05	0.21935	0.0001149	523.8140463852403	13.262	0.12369	13.262	13.216	13.34	0					7	3	3	0	0	0	0.0067848	1	2986	2986		150.36	35.467	1	715990			992	5807	558	562	1000	1000					0.09217701023112568
AEKKTKQTL	9	Unmodified	_AEKKTKQTL_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000556925.5_1_14:50285084-50295410:-|nuORF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.8145751953125	2	523.813856	1045.61316	0.52246	0.00027367	1.7625	0.00092322	2.285	0.0011969	523.8147424204806	13.022	0.1333	13.022	12.96	13.093	0					14	6	3	0	0	0	0.085655	1	2638	2638		82.75	9.8712	1	168350			993	5807	558	562	1001	1001					0.09217701023112568
AEKKTKQTL	9	Unmodified	_AEKKTKQTL_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000556925.5_1_14:50285084-50295410:-|nuORF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8140869140625	2	523.813856	1045.61316	1.7878	0.00093646	-1.1208	-0.00058708	0.66699	0.00034938	523.8132609875278	13.242	0.36763	13.242	13.19	13.557	0					16	8	4	0	0	0	0.0071744	1	3188	3188		148.69	25.482	1	4113900			994	5807	558	562	1002	1002					0.09217701023112568
AEKKTKQTL	9	Unmodified	_AEKKTKQTL_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000556925.5_1_14:50285084-50295410:-|nuORF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.8150634765625	2	523.813856	1045.61316	1.1263	0.00058998	0.81022	0.00042441	1.9365	0.0010144	523.8142046472301	13.03	0.081835	13.03	12.97	13.052	0					11	4	3	0	0	0	0.056004	1	2578	2578		93.143	7.9824	1	118340			995	5807	558	562	1003	1003					0.09217701023112568
AEKKTKQTL	9	Unmodified	_AEKKTKQTL_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000556925.5_1_14:50285084-50295410:-|nuORF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.8146362304688	2	523.813856	1045.61316	-1.2765	-0.00066863	2.3002	0.0012049	1.0237	0.00053623	523.8151232438042	13.025	0.10662	13.025	12.965	13.072	0					10	5	2	0	0	0	0.021015	1	2581	2581		120.31	24.272	1	203760			996	5807	558	562	1004	1004					0.09217701023112568
AEKKTKQTL	9	Unmodified	_AEKKTKQTL_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000556925.5_1_14:50285084-50295410:-|nuORF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.8142700195312	2	523.813856	1045.61316	1.6261	0.00085176	-0.50501	-0.00026453	1.1211	0.00058723	523.8134760645332	13.201	0.25028	13.201	13.143	13.393	0					12	5	4	0	0	0	0.0016668	1	3017	3017		176.44	34.924	1	809480			997	5807	558	562	1005	1005					0.09217701023112568
AEKKWARR	8	Unmodified	_AEKKWARR_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.8729248046875	3	348.873559	1043.59885	-0.80883	-0.00028218	-1.1114	-0.00038773	-1.9202	-0.00066991	348.8733419718486	24.501	0.12741	24.501	24.435	24.562	0					7	4	2	0	0	0	0.74405	1	7513	7513		27.882	3.6504	1	161290	+		998	13326	559	563	1006	1006					0.0787909338546342
AEKLEALSV	9	Unmodified	_AEKLEALSV_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20114425-20114572:+|nuORF;ENST00000448394.2_1_22:20110177-20114572:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.273681640625	2	480.274032	958.533512	0.047988	2.3047E-05	-0.091205	-4.3803E-05	-0.043217	-2.0756E-05	480.2738361645891	35.348	0.16714	35.348	35.275	35.442	0					12	8	2	0	0	0	0.30257	1	11582	11582		50.034	2.3762	1	96506			999	1946	560	564	1007	1007					0.052586343490816034
AEKLEALSV	9	Unmodified	_AEKLEALSV_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20114425-20114572:+|nuORF;ENST00000448394.2_1_22:20110177-20114572:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2743225097656	2	480.274032	958.533512	-0.18268	-8.7735E-05	-0.16407	-7.8801E-05	-0.34675	-0.00016654	480.27390888571387	35.64	0.22965	35.64	35.521	35.751	0					14	6	3	0	0	0	0.18416	1	13367	13367		63.534	5.7226	1	831400			1000	1946	560	564	1008	1008					0.052586343490816034
AEKLEALSV	9	Unmodified	_AEKLEALSV_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20114425-20114572:+|nuORF;ENST00000448394.2_1_22:20110177-20114572:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.27398681640625	2	480.274032	958.533512	-1.3861	-0.00066569	0.74178	0.00035626	-0.64428	-0.00030943	480.27443212368127	35.399	0.10664	35.399	35.35	35.457	0					14	5	3	0	0	0	0.16806	1	11968	11968		65.465	2.487	1	199310			1001	1946	560	564	1009	1009					0.052586343490816034
AEKLEALSV	9	Unmodified	_AEKLEALSV_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20114425-20114572:+|nuORF;ENST00000448394.2_1_22:20110177-20114572:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27392578125	2	480.274032	958.533512	0.67377	0.0003236	-0.98026	-0.00047079	-0.30649	-0.0001472	480.27350646076155	35.643	0.15234	35.643	35.532	35.684	0					12	4	3	0	0	0	0.054723	1	13818	13818		93.598	16.28	1	1526700			1002	1946	560	564	1010	1010					0.052586343490816034
AEKLEALSV	9	Unmodified	_AEKLEALSV_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20114425-20114572:+|nuORF;ENST00000448394.2_1_22:20110177-20114572:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.27386474609375	2	480.274032	958.533512	-2.9253	-0.0014049	2.4712	0.0011868	-0.45414	-0.00021811	480.2753775822005	35.433	0.14907	35.433	35.32	35.469	0					12	5	3	0	0	0	0.10506	1	12602	12602		78.264	1.4896	1	183610			1003	1946	560	564	1011	1011					0.052586343490816034
AEKLEALSV	9	Unmodified	_AEKLEALSV_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20114425-20114572:+|nuORF;ENST00000448394.2_1_22:20110177-20114572:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2738342285156	2	480.274032	958.533512	0.93233	0.00044777	-1.448	-0.00069542	-0.51564	-0.00024765	480.27335483173215	35.577	0.17019	35.577	35.466	35.637	0					6	3	2	0	0	0	0.10506	1	13758	13758		78.264	0.9462	1	811170			1004	1946	560	564	1012	1012					0.052586343490816034
AEKLFPSVV	9	Unmodified	_AEKLFPSVV_					0	0	0			REV__ARID5A|p.A461V|1|0.24|ENSG00000196843|chr2:96551910-96551910|C/T|missense_variant	REV__ARID5A|p.A461V|1|0.24|ENSG00000196843|chr2:96551910-96551910|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.28497314453125	2	495.286943	988.559333	-0.6573	-0.00032555	-4.0482	-0.002005	-4.7055	-0.0023306	495.28460493960665	27.918	0.21285	27.918	27.862	28.075	0					5	4	2	0	0	0	0.2873	1	10090	10090		51.335	0	1	249080	+		1005	12223	561	565	1013	1013					0.0645952859136969
AEKLGETEKL	10	Unmodified	_AEKLGETEKL_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3091430664062	2	559.308603	1116.60265	0.51729	0.00028933	2.2925	0.0012822	2.8098	0.0015715	559.3097278674421	23.912	1.4242	23.912	23.678	25.102	0					47	33	2	0	0	0	0.0015876	1	7989	7989		176.6	50.356	1	1996100			1006	6898	562	566	1014	1014					0.04901673578001464
AEKLGETEKL	10	Unmodified	_AEKLGETEKL_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3099975585938	2	559.308603	1116.60265	-0.45907	-0.00025676	3.6352	0.0020332	3.1761	0.0017764	559.310308743931	23.666	0.14286	23.666	23.558	23.701	0					8	5	2	0	0	0	0.17315	1	7145	7145		82.75	8.4954	1	124910			1007	6898	562	566	1015	1015					0.04901673578001464
AEKLGETEKL	10	Unmodified	_AEKLGETEKL_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.20965576171875	3	373.208161	1116.60265	0.84716	0.00031617	2.8273	0.0010552	3.6745	0.0013714	373.2092703109135	23.869	4.1691	23.869	23.496	27.665	0					174	82	3	0	0	0	0.46128	1	8262	8262		53.597	16.089	1	3569800			1008	6898	562	566	1016	1016					0.04901673578001464
AEKLGETEKL	10	Unmodified	_AEKLGETEKL_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.309326171875	2	559.308603	1116.60265	3.4693	0.0019404	-1.1113	-0.00062155	2.358	0.0013189	559.3078768911564	23.854	0.91134	23.854	23.552	24.463	0					39	18	3	0	0	0	0.0088982	1	8158	8158		147.73	48.719	1	2611400			1009	6898	562	566	1017	1017					0.04901673578001464
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.25860595703125	2	453.258185	904.501818	0.72098	0.00032679	-1.334	-0.00060465	-0.61303	-0.00027786	453.25770696605855	43.107	0.21053	43.107	43.041	43.252	0					20	10	3	0	0	0	0.056004	1	16883	16883		93.143	34.913	1	229330			1010	4933	563	567	1018	1018					0.04574686385797122
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25811767578125	2	453.258185	904.501818	0.87708	0.00039755	-1.3965	-0.00063299	-0.51945	-0.00023544	453.2576133602444	43.061	0.3241	43.061	42.896	43.22	0					15	9	2	0	0	0	0.035062	1	17214	17214		104.06	31.178	1	249060			1011	4933	563	567	1019	1019					0.04574686385797122
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25799560546875	2	453.258185	904.501818	2.5154	0.0011401	-3.7786	-0.0017127	-1.2632	-0.00057257	453.2566798025493	43.06	0.29136	43.06	42.972	43.263	0					10	8	2	0	0	0	0.085655	1	17229	17229		82.75	11.455	1	164040			1012	4933	563	567	1020	1020					0.04574686385797122
AEKLGGSAV	9	Unmodified	_AEKLGGSAV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	416.2320251464844	2	416.232168	830.449782	0.53521	0.00022277	-0.39353	-0.0001638	0.14168	5.8973E-05	416.23190351988643	21.545	0.20987	21.545	21.484	21.694	0					13	7	3	0	0	0	0.18416	1	5938	5938		63.534	4.7519	1	355600			1013	6381	564	568	1021	1021					0.027775229720418793
AEKLGGSAV	9	Unmodified	_AEKLGGSAV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.23193359375	2	416.232168	830.449782	0.066583	2.7714E-05	-0.52333	-0.00021783	-0.45674	-0.00019011	416.23191531398044	21.784	0.26626	21.784	21.575	21.842	0					6	5	2	0	0	0	0.24169	1	7286	7286		56.632	10.66	1	603840			1014	6381	564	568	1022	1022					0.027775229720418793
AEKLGGSAV	9	Unmodified	_AEKLGGSAV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.2322692871094	2	416.232168	830.449782	0.085525	3.5598E-05	-0.37694	-0.0001569	-0.29142	-0.0001213	416.2320400159415	21.647	0.16004	21.647	21.542	21.702	0					9	4	3	0	0	0	0.037712	1	6304	6304		101.46	24.142	1	226990			1015	6381	564	568	1023	1023					0.027775229720418793
AEKLGGSAV	9	Unmodified	_AEKLGGSAV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.23187255859375	2	416.232168	830.449782	-0.33794	-0.00014066	-0.40352	-0.00016796	-0.74145	-0.00030862	416.2320747685338	21.798	0.21553	21.798	21.687	21.903	0					14	4	4	0	0	0	0.037712	1	7160	7160		101.46	29.582	1	2790700			1016	6381	564	568	1024	1024					0.027775229720418793
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7740478515625	2	472.7742	943.533846	-0.025946	-1.2267E-05	0.12378	5.8522E-05	0.097837	4.6255E-05	472.7742033458959	30.106	0.2039	30.106	29.999	30.202	0					18	7	3	0	0	0	0.22691	1	9539	9539		76.17	8.676	1	373960			1017	6381	565	569	1025	1025					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.77392578125	2	472.7742	943.533846	-0.33902	-0.00016028	-0.12526	-5.922E-05	-0.46428	-0.0002195	472.77407891194065	30.094	0.29893	30.094	29.993	30.292	0					22	10	3	0	0	0	0.19191	1	9544	9544		80.455	18.347	1	346410			1018	6381	565	569	1026	1026					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7742919921875	2	472.7742	943.533846	0.22809	0.00010783	0.067798	3.2053E-05	0.29588	0.00013989	472.77425717324564	30.383	0.52137	30.383	30.284	30.805	0					23	12	2	0	0	0	0.080628	1	10935	10935		99.013	18.558	1	2699000			1019	6381	565	569	1027	1027					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7738037109375	2	472.7742	943.533846	-0.56115	-0.0002653	0.046065	2.1778E-05	-0.51509	-0.00024352	472.7741853348577	30.403	0.46981	30.403	30.272	30.742	0					21	11	2	0	0	0	0.11826	1	10944	10944		92.239	19.36	1	1844800			1020	6381	565	569	1028	1028					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2748718261719	2	472.7742	943.533846	-1.4995	-0.00070893	1.166	0.00055125	-0.33352	-0.00015768	472.77473561823217	30.143	0.61116	30.143	29.984	30.595	0					60	21	5	0	0	0	0.45669	1	9845	9845		50.034	4.0613	1	4442200			1021	6381	565	569	1029	1029					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7739562988281	2	472.7742	943.533846	0.5926	0.00028016	-0.88141	-0.00041671	-0.28881	-0.00013654	472.7738134007089	30.358	1.3132	30.358	29.553	30.866	0					76	28	5	0	0	0	0.071575	1	11325	11325		102.06	19.311	1	24258000			1022	6381	565	569	1030	1030					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.77362060546875	2	472.7742	943.533846	-0.52115	-0.00024639	0.067528	3.1926E-05	-0.45363	-0.00021446	472.77423492793184	30.15	0.75197	30.15	29.803	30.555	0					49	19	6	0	0	0	0.3029	1	10208	10208		66.92	1.4548	1	3890600			1023	6381	565	569	1031	1031					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7737731933594	2	472.7742	943.533846	0.63532	0.00030036	-1.1445	-0.00054108	-0.50915	-0.00024071	472.7737207713608	30.334	1.1507	30.334	29.681	30.831	0					64	23	6	0	0	0	0.11826	1	11203	11203		92.239	19.36	1	22586000			1024	6381	565	569	1032	1032					0.059820540689429436
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7957153320312	2	525.795132	1049.57571	0.64732	0.00034036	0.18508	9.7314E-05	0.8324	0.00043767	525.7951974826783	36.542	0.2453	36.542	36.459	36.704	0					27	13	3	0	0	0	0.024312	1	11975	11975		114.86	45.231	1	600230			1025	1831	566	570	1033	1033					0.05290609757457787
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7952880859375	2	525.795132	1049.57571	0.098306	5.1689E-05	0.41766	0.0002196	0.51596	0.00027129	525.795310719325	36.819	0.40128	36.819	36.74	37.142	0					26	11	3	0	0	0	0.011893	1	13902	13902		136.99	46.619	1	2709000			1026	1831	566	570	1034	1034					0.05290609757457787
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7962646484375	2	525.795132	1049.57571	0.51712	0.0002719	0.46325	0.00024358	0.98037	0.00051547	525.7952979555657	36.612	0.28346	36.612	36.522	36.805	0					35	15	3	0	0	0	0.024312	1	12382	12382		114.86	49.393	1	979140			1027	1831	566	570	1035	1035					0.05290609757457787
AEKLPINRL	9	Unmodified	_AEKLPINRL_					0	0	0		nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.88519287109375	3	351.885353	1052.63423	0.49438	0.00017397	-0.72662	-0.00025569	-0.23223	-8.172E-05	351.8851237223162	30.62	0.51543	30.62	30.272	30.788	0					28	12	3	0	0	0	0.24334	1	11087	11087		56.434	8.4743	1	240830			1028	1489	567	571	1036	1036					0.11001711122617053
AEKLQLQEQL	10	Unmodified	_AEKLQLQEQL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.3345947265625	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.468	1	36.468	35.968	36.968	0								0	0	0	0.26922	1	14205	14205		55.721	7.1195	1				1029	2007	568	572	1037	1037					0.06437051360649093
AEKLQRITV	9	Unmodified	_AEKLQRITV_					0	0	0		RRS1|p.P47Rfs*42|3|0.42|ENSG00000179041|chr8:66429266-66429266|C/-|frameshift_variant;ENSG00000179041|ENST00000320270|RRS1	RRS1|p.P47Rfs*42|3|0.42|ENSG00000179041|chr8:66429266-66429266|C/-|frameshift_variant	RRS1|p.P47Rfs*42|3|0.42|ENSG00000179041|chr8:66429266-66429266|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.2169494628906	3	353.216991	1056.62914	0.49247	0.00017395	-0.55333	-0.00019545	-0.06086	-2.1497E-05	353.21678416332077	26.322	0.25965	26.322	26.235	26.494	0					15	6	3	0	0	0	0.45358	1	9071	9071		62.107	5.6736	1	1816900			1030	6750	569	573	1038	1038					0.10309407259978798
AEKLYKNIL	9	Unmodified	_AEKLYKNIL_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.5535888671875	3	364.553492	1090.63865	0.484	0.00017644	-0.36227	-0.00013207	0.12174	4.4379E-05	364.55334954906454	31.646	0.16161	31.646	31.589	31.75	0					8	3	3	0	0	0	0.12834	1	11966	11966		72.879	12.761	1	174740			1031	7597	570	574	1039	1039					0.09695175545516577
AEKLYYLAK	9	Unmodified	_AEKLYYLAK_					0	0	0			REV__ENSG00000133985|ENST00000256367|TTC9	REV__ENSG00000133985|ENST00000256367|TTC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.8782958984375	3	366.877975	1097.6121	0.083393	3.0595E-05	0.33405	0.00012256	0.41744	0.00015315	366.8782419895937	14.252	0.13433	14.252	14.177	14.311	0					11	5	3	0	0	0	0.35021	1	2916	2916		45.972	14.442	1	112470	+		1032	14726	571	575	1040	1040					0.06719486654174034
AEKLYYLAK	9	Unmodified	_AEKLYYLAK_					0	0	0			REV__ENSG00000133985|ENST00000256367|TTC9	REV__ENSG00000133985|ENST00000256367|TTC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.8785095214844	3	366.877975	1097.6121	-2.0753	-0.00076136	2.7487	0.0010084	0.67342	0.00024706	366.87890281876633	14.309	0.090464	14.309	14.249	14.34	0					8	3	3	0	0	0	0.33044	1	2999	2999		47.657	6.2307	1	168540	+		1033	14726	571	575	1041	1041					0.06719486654174034
AEKMLKEKM	9	Unmodified	_AEKMLKEKM_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2988891601562	2	554.29867	1106.58279	1.8171	0.0010072	-1.5725	-0.00087162	0.24466	0.00013561	554.2978810419069	19.313	0.15825	19.313	19.215	19.373	0					7	3	3	0	0	0	0.017741	1	5817	5817		125.71	21.699	1	654870			1034	6707	572	576	1042	1042					0.033758830420310915
AEKNFLTTV	9	Unmodified	_AEKNFLTTV_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.77911376953125	2	511.779482	1021.54441	-0.44568	-0.00022809	0.43457	0.0002224	-0.011108	-5.6851E-06	511.7796813351502	37.45	0.24457	37.45	37.376	37.62	0					13	7	3	0	0	0	0.047855	1	14638	14638		96.034	29.604	1	244670			1035	7338;11704	573	577	1043	1043					0.03450036723370431
AEKNGYVTV	9	Unmodified	_AEKNGYVTV_					0	0	0		ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7558288574219	2	490.756007	979.497461	-0.49939	-0.00024508	-0.2102	-0.00010316	-0.70959	-0.00034823	490.7560402213234	26.365	0.30056	26.365	26.235	26.535	0					15	7	3	0	0	0	0.037924	1	9092	9092		101.25	18.502	1	430060			1036	5302	574	578	1044	1044					0.006891771722280282
AEKNGYVTV	9	Unmodified	_AEKNGYVTV_					0	0	0		ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7556457519531	2	490.756007	979.497461	-0.72601	-0.00035629	0.18495	9.0767E-05	-0.54106	-0.00026553	490.756097663091	26.401	0.16751	26.401	26.293	26.46	0					6	3	2	0	0	0	0.037924	1	9434	9434		101.25	13.556	1	227890			1037	5302	574	578	1045	1045					0.006891771722280282
AEKNSNVETL	10	Unmodified	_AEKNSNVETL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.N934Ifs*6|1|0.26|ENSG00000113522|chr5:132608690-132608690|A/-|frameshift_variant;RAD50|p.K501R|1|0.11|ENSG00000113522|chr5:132591273-132591273|A/G|missense_variant;RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7806396484375	2	552.78021	1103.54587	0.065202	3.6042E-05	0.84697	0.00046819	0.91217	0.00050423	552.7805818208559	22.986	0.21622	22.986	22.878	23.095	0					6	4	2	0	0	0	0.06456	1	7868	7868		104.42	23.969	1	274430			1038	2806	575	579	1046	1046					-0.0017637397852467984
AEKPKTVQL	9	Unmodified	_AEKPKTVQL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.30303955078125	2	507.303124	1012.5917	-0.64438	-0.0003269	0.62797	0.00031857	-0.016412	-8.3257E-06	507.3032263499705	21.319	0.13853	21.319	21.254	21.393	0					7	4	2	0	0	0	0.085655	1	6108	6108		82.75	9.8712	1	132130			1039	4109	576	580	1047	1047					0.08590315994376851
AEKQAVQL	8	Unmodified	_AEKQAVQL_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7530822753906	2	443.753267	885.491981	0.77239	0.00034275	-1.521	-0.00067497	-0.74865	-0.00033222	443.75273965126047	23.597	0.71208	23.597	23.418	24.13	0					34	14	3	0	0	0	0.49216	1	8002	8002		60.972	4.2509	1	1821400	+		1040	14170	577	581	1048	1048					0.04465498380432109
AEKQFKSAL	9	Unmodified	_AEKQFKSAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2882385253906	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.102	1	22.102	21.602	22.602	0								0	0	0	0.27521	1	6526	6526		40.058	1.3046	1				1041	5808	578	582	1049	1049					0.05093742960275449
AEKQKGAKSSA	11	Unmodified	_AEKQKGAKSSA_					0	0	0		ENST00000491263.1_1_1:163043981-163044347:+|nuORF;nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4;nc|ENSG00000117152|P49798-3|RGS4	ENST00000491263.1_1_1:163043981-163044347:+|nuORF	ENST00000491263.1_1_1:163043981-163044347:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.30419921875	2	552.80402	1103.59349	0.85452	0.00047238	1.9235	0.0010633	2.7781	0.0015357	552.807473552144	25.316	0.67249	25.316	25.012	25.684	0					31	13	4	0	0	0	0.36734	1	8864	8864		30.318	0	1	379000			1042	3023	579	583	1050	1050					0.04583325012345085
AEKQLENSL	9	Unmodified	_AEKQLENSL_					0	0	0		ENST00000509410.1_1_5:33461160-33466106:+|nuORF;ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENST00000509410.1_1_5:33461160-33466106:+|nuORF	ENST00000509410.1_1_5:33461160-33466106:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.27197265625	2	516.272021	1030.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.123	1	27.123	26.623	27.623	0								0	0	0	0.10497	1	9791	9791		70.399	10.28	1				1043	2803	580	584	1051	1051					0.01544544855391905
AEKQTKEAL	9	Unmodified	_AEKQTKEAL_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1;ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2830505371094	2	509.282389	1016.55022	-1.862	-0.00094826	3.1306	0.0015944	1.2687	0.00064611	509.283724122665	15.749	0.062087	15.749	15.71	15.772	0					4	2	2	0	0	0	0.35021	1	3598	3598		45.972	6.7194	1	48622			1044	7709	581	585	1052	1052					0.04261135235026359
AEKREHEKEVL	11	Unmodified	_AEKREHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.5812072753906	3	456.580769	1366.72048	0.035457	1.6189E-05	0.40152	0.00018332	0.43697	0.00019951	456.58085041722774	15.738	0.15349	15.738	15.689	15.842	0					10	6	2	0	0	0	0.26131	1	3481	3481		66.962	29.454	1	119320			1045	3051	582	586	1053	1053					0.0517862616666207
AEKREHEKEVL	11	Unmodified	_AEKREHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	684.3678588867188	2	684.367515	1366.72048	-1.4277	-0.00097706	1.5539	0.0010635	0.12627	8.6412E-05	684.368743560977	16.016	0.22846	16.016	15.966	16.194	0					13	5	3	0	0	0	0.13149	1	4266	4266		65.278	33.643	1	586960			1046	3051	582	586	1054	1054					0.0517862616666207
AEKREHEKEVL	11	Unmodified	_AEKREHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.91473388671875	3	456.580769	1366.72048	0.090841	4.1476E-05	-0.4608	-0.00021039	-0.36996	-0.00016892	456.914730288004	15.834	0.25605	15.834	15.729	15.985	0					19	10	3	0	0	0	0.59204	1	3620	3620		37.508	8.9314	1	71545			1047	3051	582	586	1055	1055					0.0517862616666207
AEKREHEKEVL	11	Unmodified	_AEKREHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.58087158203125	3	456.580769	1366.72048	-0.43181	-0.00019715	0.29715	0.00013567	-0.13466	-6.1482E-05	456.58090466689094	16.005	0.47099	16.005	15.896	16.367	0					22	9	3	0	0	0	0.17294	1	4331	4331		77.533	32.894	1	1424100			1048	3051	582	586	1056	1056					0.0517862616666207
AEKRHREEL	9	Unmodified	_AEKRHREEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.8793640136719	3	389.879149	1166.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.402	1	14.402	13.902	14.902	0								0	0	0	0.3245	1	3728	3728		30.318	1.1477	1				1049	4171	583	587	1057	1057					0.03897549480757334
AEKRSLMLQ	9	Oxidation (M)	_AEKRSLM(Oxidation (M))LQ_		AEKRSLM(1)LQ		AEKRSLM(93)LQ	0	0	1		GLI3|p.V1045M|1|0.35|ENSG00000106571|chr7:41965940-41965940|C/T|missense_variant	GLI3|p.V1045M|1|0.35|ENSG00000106571|chr7:41965940-41965940|C/T|missense_variant	GLI3|p.V1045M|1|0.35|ENSG00000106571|chr7:41965940-41965940|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.535400390625	3	364.534103	1090.58048	3.1441	0.0011461	-0.94274	-0.00034366	2.2014	0.00080248	364.5343089524342	30.755	0.60454	30.755	30.505	31.11	0					39	12	5	0	0	0	0.056004	1	11361	11361		93.143	12.689	1	2525900			1050	11157	584	588	1058	1058		436			0.03881170628574182
AEKRSLMLQ	9	Unmodified	_AEKRSLMLQ_					0	0	0		GLI3|p.V1045M|1|0.35|ENSG00000106571|chr7:41965940-41965940|C/T|missense_variant	GLI3|p.V1045M|1|0.35|ENSG00000106571|chr7:41965940-41965940|C/T|missense_variant	GLI3|p.V1045M|1|0.35|ENSG00000106571|chr7:41965940-41965940|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2037353515625	3	359.202465	1074.58556	3.0937	0.0011113	0.053462	1.9204E-05	3.1472	0.0011305	359.2026198584241	37.493	1.1495	37.493	37.285	38.435	0					65	24	5	0	0	0	0.13726	1	14649	14649		70.816	1.1886	1	9065200			1051	11157	584	589	1059	1059					0.051254744912057504
AEKSEQPTL	9	Unmodified	_AEKSEQPTL_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.75897216796875	2	501.758746	1001.50294	-0.94765	-0.00047549	1.4328	0.0007189	0.48512	0.00024341	501.75926454982874	22.575	0.22895	22.575	22.47	22.699	0					17	7	3	0	0	0	0.19952	1	6684	6684		61.691	3.88	1	190890			1052	2902	585	590	1060	1060					0.0022485596406340846
AEKSEQPTL	9	Unmodified	_AEKSEQPTL_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7586669921875	2	501.758746	1001.50294	2.9247	0.0014675	-2.4099	-0.0012092	0.51483	0.00025832	501.7572027051004	22.763	0.41676	22.763	22.505	22.922	0					18	8	3	0	0	0	0.061298	1	7634	7634		91.265	11.553	1	957900			1053	2902	585	590	1061	1061					0.0022485596406340846
AEKSLSKPY	9	Unmodified	_AEKSLSKPY_					0	0	0			REV__PRKCA|p.E588Rfs*4|1|0.53|ENSG00000154229|chr17:66788883-66788883|G/-|frameshift_variant	REV__PRKCA|p.E588Rfs*4|1|0.53|ENSG00000154229|chr17:66788883-66788883|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7801818847656	2	511.779482	1021.54441	-0.34829	-0.00017825	0.54598	0.00027942	0.19769	0.00010117	511.77981806118936	37.219	0.15859	37.219	37.132	37.29	0					13	8	2	0	0	0	0.28897	1	12577	12577		51.193	5.2204	1	66645	+		1054	15562	586	591	1062	1062					0.034500367233818
AEKSTEEKGSG	11	Unmodified	_AEKSTEEKGSG_					0	0	0			REV__ENST00000481707.5_1_1:192127767-192130605:+|nuORF	REV__ENST00000481707.5_1_1:192127767-192130605:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7680053710938	2	561.7673	1121.52005	0.12904	7.2488E-05	0.24049	0.0001351	0.36953	0.00020759	561.7679937847832	23.83	0.52037	23.83	23.669	24.189	0					58	17	5	0	0	0	0.52595	1	7180	7180		42.338	5.8913	1	1974000	+		1055	15447	587	592	1063	1063					-0.03585268220808757
AEKVATRGL	9	Unmodified	_AEKVATRGL_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7795715332031	2	472.779816	943.545079	0.2285	0.00010803	-0.5988	-0.0002831	-0.3703	-0.00017507	472.779544956651	19.624	0.19664	19.624	19.522	19.719	0					7	4	2	0	0	0	0.24169	1	5967	5967		56.632	10.175	1	1684200			1056	4873	588	593	1064	1064					0.07104876163089102
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2816467285156	2	487.281857	972.549162	-0.0019266	-9.3882E-07	-0.20201	-9.8435E-05	-0.20394	-9.9374E-05	487.28141363450266	35.097	0.1383	35.097	35.04	35.179	0					10	6	2	0	0	0	0.10506	1	11505	11505		78.264	19.482	1	115720			1057	1193	589	594	1065	1065					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.28167724609375	2	487.281857	972.549162	0.72087	0.00035127	0.43833	0.00021359	1.1592	0.00056486	487.28261222404507	35.42	0.49551	35.42	35.305	35.801	0					20	13	3	0	0	0	0.054723	1	13291	13291		93.598	16.28	1	512510			1058	1193	589	594	1066	1066					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.28155517578125	2	487.281857	972.549162	-0.33956	-0.00016546	-0.15755	-7.6772E-05	-0.49711	-0.00024223	487.2818121944923	35.411	0.2365	35.411	35.295	35.531	0					16	6	4	0	0	0	0.035106	1	13282	13282		104.01	31.134	1	639100			1059	1193	589	594	1067	1067					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.28155517578125	2	487.281857	972.549162	-0.22842	-0.0001113	-0.18069	-8.8049E-05	-0.40911	-0.00019935	487.28182764217894	35.157	0.34291	35.157	35.082	35.425	0					24	11	3	0	0	0	0.02953	1	12496	12496		109.48	5.4215	1	809600			1060	1193	589	594	1068	1068					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.28155517578125	2	487.281857	972.549162	0.8111	0.00039523	-1.4051	-0.00068469	-0.59403	-0.00028946	487.28123192534116	35.368	0.42394	35.368	35.213	35.637	0					20	8	3	0	0	0	0.0088974	1	13635	13635		143.37	30.963	1	4374900			1061	1193	589	594	1069	1069					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2816162109375	2	487.281857	972.549162	2.5536	0.0012443	-1.4492	-0.00070617	1.1044	0.00053813	487.2815482059971	35.356	0.57156	35.356	35.245	35.817	0					21	11	3	0	0	0	0.014413	1	13627	13627		131.62	30.364	1	5842300			1062	1193	589	594	1070	1070					0.06178920866148019
AEKYAKESL	9	Unmodified	_AEKYAKESL_					0	0	0		ENST00000557290.1_1_14:58737043-58738610:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7781982421875	2	519.776939	1037.53933	1.4442	0.00075068	0.39508	0.00020535	1.8393	0.00095603	519.7774416275172	20.226	0.052979	20.226	20.197	20.25	0					6	2	3	0	0	0	0.11411	1	5378	5378		76.17	1.1264	1	74076			1063	2041	590	595	1071	1071					0.022057328607616
AEKYAKESL	9	Unmodified	_AEKYAKESL_					0	0	0		ENST00000557290.1_1_14:58737043-58738610:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.777587890625	2	519.776939	1037.53933	1.4034	0.00072946	0.0071131	3.6972E-06	1.4105	0.00073316	519.7771029151639	20.569	0.10303	20.569	20.522	20.625	0					4	2	2	0	0	0	0.015992	1	6415	6415		128.6	35.459	1	705580			1064	2041	590	595	1072	1072					0.022057328607616
AEKYAKESL	9	Unmodified	_AEKYAKESL_					0	0	0		ENST00000557290.1_1_14:58737043-58738610:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7780151367188	2	519.776939	1037.53933	0.2157	0.00011212	2.1662	0.0011259	2.3819	0.001238	519.7777701010089	20.264	0.11732	20.264	20.214	20.332	0					6	4	2	0	0	0	0.037712	1	5632	5632		101.46	5.6447	1	124300			1065	2041	590	595	1073	1073					0.022057328607616
AEKYAKESL	9	Unmodified	_AEKYAKESL_					0	0	0		ENST00000557290.1_1_14:58737043-58738610:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7772216796875	2	519.776939	1037.53933	1.6533	0.00085935	-0.69711	-0.00036234	0.9562	0.00049701	519.776595666545	20.47	0.11755	20.47	20.412	20.529	0					6	2	3	0	0	0	0.022698	1	6653	6653		117.53	2.6312	1	1078500			1066	2041	590	595	1074	1074					0.022057328607616
AEKYAKESL	9	Unmodified	_AEKYAKESL_					0	0	0		ENST00000557290.1_1_14:58737043-58738610:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7772827148438	2	519.776939	1037.53933	1.6145	0.00083916	-0.83432	-0.00043366	0.78015	0.0004055	519.7765334781436	20.486	0.11782	20.486	20.427	20.544	0					4	2	2	0	0	0	0.032181	1	6526	6526		106.88	8.2983	1	1059700			1067	2041	590	595	1075	1075					0.022057328607616
AEKYQTVIA	9	Unmodified	_AEKYQTVIA_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7798156738281	2	511.779482	1021.54441	3.1047	0.0015889	-2.582	-0.0013214	0.52271	0.00026751	511.7781810754758	28.088	0.41417	28.088	27.78	28.194	0					13	8	3	0	0	0	0.22837	1	10147	10147		58.23	0	1	413470			1068	1623	591	596	1076	1076					0.03450036723370431
AELAALHAAY	10	Unmodified	_AELAALHAAY_					0	0	0			REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2720947265625	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.889	1	30.889	30.389	31.389	0								0	0	0	0.29806	1	10188	10188		30.504	0	1		+		1069	13445	592	597	1077	1077					0.015971699261854155
AELAKVEL	8	Unmodified	_AELAKVEL_					0	0	0			REV__TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant	REV__TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7578430175781	2	436.758018	871.501483	-0.41426	-0.00018093	0.3653	0.00015955	-0.048964	-2.1385E-05	436.7581270490276	34.842	0.21196	34.842	34.735	34.947	0					16	6	3	0	0	0	0.24383	1	13440	13440		112.41	0	1	429650	+		1070	21659	593	598	1078	1078					0.060592666659431416
AELAKVEL	8	Unmodified	_AELAKVEL_					0	0	0			REV__TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant	REV__TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.75775146484375	2	436.758018	871.501483	-0.55196	-0.00024107	0.49252	0.00021511	-0.059436	-2.5959E-05	436.75816919862314	34.793	0.31409	34.793	34.684	34.998	0					13	6	3	0	0	0	0.24999	1	13357	13357		101.25	0	1	866080	+		1071	21659	593	598	1079	1079					0.060592666659431416
AELALKTL	8	Unmodified	_AELALKTL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.7680358886719	2	429.768386	857.522219	-0.56808	-0.00024414	-0.21337	-9.17E-05	-0.78145	-0.00033584	429.7682495346317	37.216	0.16059	37.216	37.131	37.292	0					6	4	2	0	0	0	0.27565	1	14102	14102		90.601	18.723	1	92770			1072	4109	594	599	1080	1080					0.0877585704562307
AELALKTL	8	Unmodified	_AELALKTL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.7681884765625	2	429.768386	857.522219	0.96016	0.00041265	-1.2798	-0.00055001	-0.31963	-0.00013737	429.76778811149893	37.212	0.24538	37.212	37.058	37.304	0					12	7	3	0	0	0	0.24999	1	14530	14530		101.25	2.6232	1	216280			1073	4109	594	599	1081	1081					0.0877585704562307
AELANVVKL	9	Unmodified	_AELANVVKL_					0	0	0			REV__nc|ENSG00000171109|Q8IWA4-2|MFN1	REV__nc|ENSG00000171109|Q8IWA4-2|MFN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7915344238281	2	478.792392	955.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.158	1	37.158	36.658	37.658	0								0	0	0	0.27025	1	14517	14517		40.778	0.20554	1		+		1074	16400	595	600	1082	1082					0.09066930965661868
AELATLGA	8	Unmodified	_AELATLGA_					0	0	0		ENST00000589029.1_3_19:38893832-38894179:+|nuORF;nc|ENSG00000130244|Q17RN3-2|FAM98C;ENSG00000130244|ENST00000252530|FAM98C	ENST00000589029.1_3_19:38893832-38894179:+|nuORF	ENST00000589029.1_3_19:38893832-38894179:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2101745605469	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.622	1	39.622	39.122	40.122	0								0	0	0	1.7419	1	15591	15591		28.254	1.4582	1				1075	3630	596	601	1083	1083					0.019344490519983992
AELATRAL	8	Unmodified	_AELATRAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7484436035156	2	422.747985	843.481417	0.37207	0.00015729	-0.01784	-7.5418E-06	0.35423	0.00014975	422.7478348684556	27.139	0.15139	27.139	27.067	27.218	0					9	5	2	0	0	0	0.48092	1	8337	8337		62.107	0	1	55054			1076	6450	597	602	1084	1084					0.053415157259905754
AELATRAL	8	Unmodified	_AELATRAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.748046875	2	422.747985	843.481417	-0.21419	-9.0549E-05	0.34378	0.00014533	0.12958	5.4781E-05	422.74821971466514	27.43	0.26436	27.43	27.321	27.586	0					9	5	3	0	0	0	0.32597	1	9926	9926		79.713	0	1	306360			1077	6450	597	602	1085	1085					0.053415157259905754
AELATRAL	8	Unmodified	_AELATRAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7483215332031	2	422.747985	843.481417	0.13392	5.6614E-05	0.6387	0.00027001	0.77262	0.00032662	422.74824427703226	27.227	0.14014	27.227	27.139	27.279	0					5	3	2	0	0	0	0.53424	1	8890	8890		56.721	0	1	52174			1078	6450	597	602	1086	1086					0.053415157259905754
AELATRAL	8	Unmodified	_AELATRAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7483215332031	2	422.747985	843.481417	-0.028824	-1.2185E-05	0.31281	0.00013224	0.28398	0.00012005	422.7480405456503	27.21	0.17761	27.21	27.129	27.306	0					8	4	2	0	0	0	0.41	1	8883	8883		69.628	0	1	107940			1079	6450	597	602	1087	1087					0.053415157259905754
AELCTIWKN	9	Unmodified	_AELCTIWKN_					0	0	0		ENST00000264255.7_1_2:99949665-99952760:-|nuORF	ENST00000264255.7_1_2:99949665-99952760:-|nuORF	ENST00000264255.7_1_2:99949665-99952760:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2562255859375	2	539.273509	1076.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.005	1	36.005	35.505	36.505	0								0	0	0	0.22284	1	13993	13993		47.657	8.4045	1				1080	8327	598	603	1088	1088					-0.002739032914632844
AELDKGEQLE	10	Unmodified	_AELDKGEQLE_					0	0	0			REV__ENST00000592124.1_1_19:34756504-34790780:+|nuORF	REV__ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.2815551757812	2	566.280043	1130.54553	-1.1694	-0.0006622	2.6467	0.0014988	1.4773	0.00083657	566.7826568698229	30.183	0.19607	30.183	30.094	30.29	0					8	5	2	0	0	0	0.27406	1	10256	10256		77.318	13.11	1	84975	+		1081	20536	599	604	1089	1089					-0.014517936983793334
AELEELTPL	9	Unmodified	_AELEELTPL_					0	0	0		nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7715148925781	2	507.771322	1013.52809	2.9536	0.0014998	-2.161	-0.0010973	0.7926	0.00040246	507.7700236349918	38.096	0.29015	38.096	37.961	38.251	0					14	6	3	0	0	0	0.32741	1	14966	14966		47.916	0.25827	1	278980			1082	11415	600	605	1090	1090					0.02186910766613437
AELEKHMAA	9	Unmodified	_AELEKHMAA_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2501525878906	2	500.250034	998.485516	0.66092	0.00033062	-1.2853	-0.00064298	-0.62439	-0.00031235	500.2495741862191	19.787	0.18034	19.787	19.706	19.886	0					11	4	3	0	0	0	0.0406	1	6025	6025		98.629	29.843	1	602050			1083	3441	601	606	1091	1091					-0.013787628426030096
AELEKHMAA	9	Unmodified	_AELEKHMAA_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.25030517578125	2	500.250034	998.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.472	1	19.472	18.972	19.972	0								0	0	0	0.31838	1	5280	5280		31.53	2.3803	1				1084	3441	601	606	1092	1092					-0.013787628426030096
AELEKHMAA	9	Unmodified	_AELEKHMAA_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.25018310546875	2	500.250034	998.485516	1.0895	0.00054501	-1.0239	-0.00051219	0.065604	3.2818E-05	500.24945223580994	19.631	0.2166	19.631	19.574	19.791	0					9	4	3	0	0	0	0.023928	1	6116	6116		115.49	3.8458	1	640010			1085	3441	601	606	1093	1093					-0.013787628426030096
AELESKTNTL	10	Unmodified	_AELESKTNTL_					0	0	0		nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55;CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant	nc|ENSG00000138180|Q53EZ4-2|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.2913818359375	2	553.290411	1104.56627	1.318	0.00072924	0.43348	0.00023984	1.7515	0.00096908	553.2912340091202	25.673	0.13875	25.673	25.606	25.744	0					6	4	2	0	0	0	0.17315	1	7757	7757		82.75	7.7072	1	62812			1086	4236	602	607	1094	1094					0.01816796681305277
AELESKTNTL	10	Unmodified	_AELESKTNTL_					0	0	0		nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55;CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant	nc|ENSG00000138180|Q53EZ4-2|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.2903442382812	2	553.290411	1104.56627	0.62479	0.00034569	0.31076	0.00017194	0.93555	0.00051763	553.2902772214451	25.954	0.30962	25.954	25.732	26.042	0					9	5	2	0	0	0	0.12383	1	8902	8902		91.265	7.978	1	373760			1087	4236	602	607	1095	1095					0.01816796681305277
AELEVKKF	8	Unmodified	_AELEVKKF_					0	0	0			REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.27880859375	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.576	1	39.576	39.076	40.076	0								0	0	0	1.7419	1	15073	15073		34.173	2.6427	1		+		1088	21778	603	608	1096	1096					0.06091242074330694
AELFHHDPK	9	Unmodified	_AELFHHDPK_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.18731689453125	3	365.185691	1092.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.18	1	41.18	40.68	41.68	0								0	0	0	0.3304	1	16363	16363		29.17	2.1227	1		+		1089	13844	604	609	1097	1097					-0.007323118423073538
AELFLAPKK	9	Unmodified	_AELFLAPKK_					0	0	0			REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.8109436035156	2	508.810585	1015.60662	2.9885	0.0015206	-2.494	-0.0012689	0.49455	0.00025163	508.80953914799255	44.822	0.38314	44.822	44.606	44.989	0					19	16	2	0	0	0	0.41113	1	17945	17945		40.778	6.6056	1	170890	+		1090	15453	605	610	1098	1098					0.09943807862373433
AELGNMQGL	9	Unmodified	_AELGNMQGL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000405771.3_1_6:134619244-134619385:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000441609.1_1_6:162989483-162989972:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7294006347656	2	466.728935	931.443317	-0.43716	-0.00020404	0.57807	0.0002698	0.14091	6.5768E-05	466.7293170357789	41.949	0.08709	41.949	41.901	41.988	0					7	5	2	0	0	0	0.5741	1	13401	13401		24.519	1.4767	1	43864		+	1091	11643;9643	606	611	1099	1099					-0.025147382509771887
AELGNMQGL	9	Unmodified	_AELGNMQGL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000405771.3_1_6:134619244-134619385:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000441609.1_1_6:162989483-162989972:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7287902832031	2	466.728935	931.443317	-0.66257	-0.00030924	0.10979	5.124E-05	-0.55278	-0.000258	466.7290635373873	42.3	0.23958	42.3	42.197	42.437	0					24	12	3	0	0	0	0.25716	1	16017	16017		54.776	14.718	1	207250		+	1092	11643;9643	606	611	1100	1100					-0.025147382509771887
AELGNMQGL	9	Unmodified	_AELGNMQGL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000405771.3_1_6:134619244-134619385:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000441609.1_1_6:162989483-162989972:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7283020019531	2	466.728935	931.443317	-0.95242	-0.00044452	-0.46411	-0.00021661	-1.4165	-0.00066113	466.7288467338459	42.069	0.1204	42.069	41.973	42.093	0					12	7	2	0	0	0	0.15163	1	13892	13892		67.494	21.521	1	96568		+	1093	11643;9643	606	611	1101	1101					-0.025147382509771887
AELGNMQGL	9	Unmodified	_AELGNMQGL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000405771.3_1_6:134619244-134619385:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000441609.1_1_6:162989483-162989972:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7286071777344	2	466.728935	931.443317	0.6413	0.00029932	-1.5101	-0.00070482	-0.86883	-0.00040551	466.7283009943125	42.221	0.21375	42.221	42.133	42.347	0					9	5	2	0	0	0	0.11898	1	16825	16825		75.043	16.261	1	256350		+	1094	11643;9643	606	611	1102	1102					-0.025147382509771887
AELHLSTER	9	Unmodified	_AELHLSTER_					0	0	0		ENSG00000152240|ENST00000282058|HAUS1;nc|ENSG00000152240|Q96CS2-2|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.5207824707031	3	352.520851	1054.54072	-0.70255	-0.00024766	0.57648	0.00020322	-0.12606	-4.444E-05	352.5210578727247	21.312	0.11503	21.312	21.271	21.386	0					5	3	2	0	0	0	0.37197	1	6102	6102		42.864	0	1	166850			1095	5004	607	612	1103	1103					0.015633669495173308
AELITPSH	8	Unmodified	_AELITPSH_					0	0	0			REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.2317810058594	2	434.232168	866.449782	0.22205	9.642E-05	-0.073938	-3.2106E-05	0.14811	6.4314E-05	434.2318621726914	34.148	0.17417	34.148	34.071	34.245	0					6	5	2	0	0	0	0.60719	1	12066	12066		47.916	1.9636	1	35785	+		1096	20906	608	613	1104	1104					0.011215229720505704
AELKIKRL	8	Unmodified	_AELKIKRL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.82427978515625	2	485.824027	969.633501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.8	1	22.8	22.3	23.3	0								0	0	0	1.7419	1	6503	6503		29.15	0	1				1097	4790	609	614	1105	1105					0.1474691647357531
AELKIKRL	8	Unmodified	_AELKIKRL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.8233642578125	2	485.824027	969.633501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.903	1	22.903	22.403	23.403	0								0	0	0	1.7419	1	6808	6808		31.955	2.8053	1				1098	4790	609	614	1106	1106					0.1474691647357531
AELKMTGNCL	10	Carbamidomethyl (C)	_AELKMTGNC(Carbamidomethyl (C))L_	AELKMTGNC(1)L		AELKMTGNC(45)L		0	1	0		ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.7764282226562	2	568.775559	1135.53657	1.1542	0.0006565	0.66426	0.00037781	1.8185	0.0010343	568.7758005440013	33.052	0.10884	33.052	33.001	33.109	0					8	5	2	0	0	0	0.50287	1	10724	10724		45.022	10.85	1	52568			1099	2805	610	615	1107	1107	110				-0.02578181860053519
AELKMTGNCL	10	Carbamidomethyl (C)	_AELKMTGNC(Carbamidomethyl (C))L_	AELKMTGNC(1)L		AELKMTGNC(89)L		0	1	0		ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.7764892578125	2	568.775559	1135.53657	0.11429	6.5008E-05	0.44748	0.00025452	0.56177	0.00031952	568.7761349091608	33.297	0.24636	33.297	33.21	33.456	0					11	6	3	0	0	0	0.13663	1	12309	12309		89.029	20.242	1	245590			1100	2805	610	615	1108	1108	110				-0.02578181860053519
AELKMTGNCL	10	Carbamidomethyl (C)	_AELKMTGNC(Carbamidomethyl (C))L_	AELKMTGNC(1)L		AELKMTGNC(52)L		0	1	0		ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.7754516601562	2	568.775559	1135.53657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.314	1	33.314	32.814	33.814	0								0	0	0	0.29594	1	12743	12743		51.528	7.877	1				1101	2805	610	615	1109	1109	110				-0.02578181860053519
AELKMTGNCL	10	Carbamidomethyl (C)	_AELKMTGNC(Carbamidomethyl (C))L_	AELKMTGNC(1)L		AELKMTGNC(52)L		0	1	0		ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENST00000510960.5_1_5:34915843-34922894:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.77587890625	2	568.775559	1135.53657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.1	1	33.1	32.6	33.6	0								0	0	0	0.29594	1	11581	11581		51.528	8.6635	1				1102	2805	610	615	1110	1110	110				-0.02578181860053519
AELKQVQTL	9	Unmodified	_AELKQVQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3009033203125	2	515.300581	1028.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.138	1	30.138	29.638	30.638	0								0	0	0	0.12601	1	10836	10836		65.465	12.529	1				1103	11514	611	616	1111	1111					0.07346012131779389
AELKQVQTL	9	Unmodified	_AELKQVQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3013305664062	2	515.300581	1028.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.108	1	30.108	29.608	30.608	0								0	0	0	0.14961	1	11220	11220		59.931	12.273	1				1104	11514	611	616	1112	1112					0.07346012131779389
AELKSSTVGL	10	Unmodified	_AELKSSTVGL_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000145945|ENST00000648326|FAM50B	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.78448486328125	2	502.784764	1003.55498	-0.068517	-3.4449E-05	-0.68158	-0.00034269	-0.7501	-0.00037714	502.78436754515656	30.438	0.29206	30.438	30.234	30.526	0					13	7	3	0	0	0	0.25899	1	10965	10965		72.243	26.271	1	421580			1105	1478	612	617	1113	1113					0.053340193778240064
AELKSSTVGL	10	Unmodified	_AELKSSTVGL_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000145945|ENST00000648326|FAM50B	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7847595214844	2	502.784764	1003.55498	-0.5175	-0.00026019	0.70933	0.00035664	0.19183	9.645E-05	502.7849972424103	30.392	0.21253	30.392	30.334	30.546	0					9	4	3	0	0	0	0.080628	1	11364	11364		99.013	38.895	1	424220			1106	1478	612	617	1114	1114					0.053340193778240064
AELLCPLSLW	10	Carbamidomethyl (C)	_AELLC(Carbamidomethyl (C))PLSLW_	AELLC(1)PLSLW		AELLC(48)PLSLW		0	1	0		ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.318603515625	2	601.317917	1200.62128	0.46566	0.00028001	1.3257	0.00079719	1.7914	0.0010772	601.3184688394183	28.823	0.14255	28.823	28.75	28.893	0					5	3	2	0	0	0	0.47859	1	9619	9619		47.657	14.845	1	57626			1107	5638	613	618	1115	1115	233				0.02899511948203326
AELLHALA	8	Unmodified	_AELLHALA_					0	0	0			REV__ENSG00000102109|ENST00000218230|PCSK1N	REV__ENSG00000102109|ENST00000218230|PCSK1N	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.244873046875	2	419.245078	836.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.628	1	38.628	38.128	39.128	0								0	0	0	1.7419	1	14686	14686		29.842	0	1		+		1108	13625	614	619	1116	1116					0.05082417214305224
AELLYIIRQK	10	Unmodified	_AELLYIIRQK_					0	0	0		nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851|CASP10;ENST00000484926.1_1_2:202050494-202050848:+|nuORF;nc|ENSG00000003400|Q92851-7|CASP10;nc|ENSG00000003400|Q92851-3|CASP10;ENST00000460140.5_1_2:202050494-202070750:+|nuORF;CASP10|p.F397Hfs*7|1|0.3|ENSG00000003400|chr2:201209333-201209334|TT/-|frameshift_variant;CASP10|p.K392Nfs*26|1|0.1|ENSG00000003400|chr2:201209319-201209319|A/-|frameshift_variant;nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;ENSG00000003400|ENST00000286186|CASP10	nc|ENSG00000003400|Q92851-5|CASP10	nc|ENSG00000003400|Q92851-5|CASP10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.2560729980469	3	416.255446	1245.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.476	1	15.476	14.976	15.976	0								0	0	0	0.4201	1	3536	3536		16.717	3.2094	1				1109	11410	615	620	1117	1117					0.13146511390982596
AELMQMCLGD	10	Unmodified	_AELMQMCLGD_					0	0	0			REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.236328125	2	555.735045	1109.45554	-0.44984	-0.00024999	-0.04059	-2.2557E-05	-0.49043	-0.00027255	555.7355128840717	36.029	0.14236	36.029	35.96	36.102	0					9	6	2	0	0	0	0.63224	1	12204	12204		30.318	0	1	53092	+		1110	20966	616	621	1118	1118					-0.09481205894439881
AELNLRSNEL	10	Unmodified	_AELNLRSNEL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000528713.5_1_11:500482-502162:-|nuORF;ENST00000531223.1_1_11:499763-502162:-|nuORF;ENST00000525522.5_1_11:499827-504867:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.8096313476562	2	579.809302	1157.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.998	1	35.998	35.498	36.498	0								0	0	0	0.065662	1	13544	13544		86.882	10.712	1				1111	1117	617	622	1119	1119					0.03155307666770568
AELNRSPLQ	9	Unmodified	_AELNRSPLQ_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.28076171875	2	514.28018	1026.54581	0.61448	0.00031601	-1.0934	-0.0005623	-0.4789	-0.00024629	514.2792121487754	18.984	0.23554	18.984	18.928	19.164	0					6	5	2	0	0	0	0.17854	1	5078	5078		64.207	9.431	1	99470	+		1112	14649	618	623	1120	1120					0.033596708121422125
AELNTHVNV	9	Unmodified	_AELNTHVNV_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;ENST00000459656.5_1_2:201171456-201254069:+|nuORF	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7582092285156	2	498.759081	995.503609	-0.020331	-1.014E-05	-1.2922	-0.00064449	-1.3125	-0.00065463	498.7582624420881	31.308	0.18516	31.308	31.228	31.414	0					8	4	2	0	0	0	0.41113	1	11803	11803		40.778	1.5253	1	249920			1113	7327	619	624	1121	1121					0.005676954037539872
AELPKKRMR	9	Unmodified	_AELPKKRMR_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.2276306152344	3	376.893854	1127.65973	0.46141	0.0001739	-3.1261	-0.0011782	-2.6647	-0.0010043	377.2275270662013	24.238	0.86646	24.238	23.679	24.545	0					35	17	4	0	0	0	0.51991	1	8422	8422		30.318	0	1	1621300			1114	1189	620	625	1122	1122					0.10100862373383279
AELPLPPSPT	10	Unmodified	_AELPLPPSPT_					0	0	0		EIF4G3|p.V564*|2|0.22|ENSG00000075151|chr1:20899839-20899839|T/-|frameshift_variant;EIF4G3|p.A945Qfs*16|1|0.25|ENSG00000075151|chr1:20864482-20864482|T/-|frameshift_variant;EIF4G3|p.I1064Nfs*6|1|0.32|ENSG00000075151|chr1:20855052-20855053|-/T|frameshift_variant;EIF4G3|p.F1258Lfs*2|1|0.43|ENSG00000075151|chr1:20840975-20840975|A/-|frameshift_variant;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3	EIF4G3|p.V564*|2|0.22|ENSG00000075151|chr1:20899839-20899839|T/-|frameshift_variant	EIF4G3|p.V564*|2|0.22|ENSG00000075151|chr1:20899839-20899839|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7855224609375	2	511.281857	1020.54916	1.1348	0.00058021	-1.6238	-0.00083021	-0.48897	-0.00025	511.27988771328967	20.031	0.14197	20.031	19.97	20.112	0					9	4	3	0	0	0	0.47859	1	5291	5291		47.657	1.6851	1	52932			1115	901	621	626	1123	1123					0.039709208661292905
AELQCETLA	9	Carbamidomethyl (C)	_AELQC(Carbamidomethyl (C))ETLA_	AELQC(1)ETLA		AELQC(55)ETLA		0	1	0			REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7434692382812	2	517.744782	1033.47501	-1.4431	-0.00074717	-1.5298	-0.00079203	-2.9729	-0.0015392	517.7441071048684	27.861	0.17908	27.861	27.773	27.952	0					6	4	2	0	0	0	0.25716	1	9175	9175		54.776	13.35	1	248180	+		1116	12934	622	627	1124	1124	506				-0.040387902876773296
AELQEVVKV	9	Unmodified	_AELQEVVKV_					0	0	0		CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7967834472656	2	507.795132	1013.57571	-0.6129	-0.00031123	2.2673	0.0011513	1.6544	0.00084008	507.7963220647246	36.35	0.19461	36.35	36.26	36.454	0					13	10	2	0	0	0	0.27123	1	12311	12311		53.089	3.5529	1	73057			1117	440	623	628	1125	1125					0.06946609757483202
AELQEVVKV	9	Unmodified	_AELQEVVKV_					0	0	0		CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7955017089844	2	507.795132	1013.57571	1.1253	0.00057143	-1.9782	-0.0010045	-0.85288	-0.00043309	507.7942487411523	36.519	0.63137	36.519	36.052	36.684	0					31	18	2	0	0	0	0.054723	1	14241	14241		93.598	26.104	1	325460			1118	440	623	628	1126	1126					0.06946609757483202
AELQPYMLK	9	Unmodified	_AELQPYMLK_					0	0	0		ENST00000296885.7_1_6:88117749-88144792:+|nuORF;ENST00000489338.6_1_6:88125312-88173965:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7922973632812	2	546.791535	1091.56852	3.8009	0.0020783	-2.8666	-0.0015674	0.93429	0.00051086	546.7900140844745	37.969	0.42991	37.969	37.821	38.251	0					14	9	2	0	0	0	0.27249	1	14899	14899		52.937	2.9122	1	197520			1119	8089	624	629	1127	1127					0.026395538853876133
AELQREAMQQ	10	Unmodified	_AELQREAMQQ_					0	0	0		nc|ENSG00000108852|Q14168-3|MPP2	nc|ENSG00000108852|Q14168-3|MPP2	nc|ENSG00000108852|Q14168-3|MPP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.291259765625	2	602.292962	1202.57137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.78	1	20.78	20.28	21.28	0								0	0	0	0.29594	1	6786	6786		39.253	0	1				1120	11477	625	630	1128	1128					-0.021812227277450802
AELRGQSRGLA	11	Unmodified	_AELRGQSRGLA_					0	0	0			REV__ENST00000485798.5_1_19:49403599-49425678:+|nuORF	REV__ENST00000485798.5_1_19:49403599-49425678:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.5513610839844	3	386.551033	1156.63127	0.17503	6.7657E-05	0.28494	0.00011014	0.45997	0.0001778	386.5511474283947	14.242	0.11716	14.242	14.184	14.301	0					4	2	2	0	0	0	0.63225	1	3666	3666		34.087	1.336	1	110340	+		1121	13737	626	631	1129	1129					0.05921835997810376
AELSARVKQ	9	Unmodified	_AELSARVKQ_					0	0	0			REV__nc|ENSG00000160401|Q5JU67-2|CFAP157	REV__nc|ENSG00000160401|Q5JU67-2|CFAP157	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2910461425781	2	501.290548	1000.56654	0.1482	7.429E-05	-0.19151	-9.6E-05	-0.043307	-2.171E-05	501.29046487413274	16.133	0.36646	16.133	15.84	16.206	0					16	12	2	0	0	0	0.31937	1	3692	3692		58.23	18.977	1	77645	+		1122	15752	627	632	1130	1130					0.06628261191804086
AELSRLHR	8	Unmodified	_AELSRLHR_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;nc|ENSG00000090615|Q08378-4|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.857666015625	3	327.857797	980.551562	-0.70274	-0.0002304	0.55189	0.00018094	-0.15085	-4.9456E-05	327.85801627368807	14.687	0.87716	14.687	14.544	15.421	0					75	36	3	0	0	0	0.8006	1	3207	3207		23.042	1.0826	1	825030			1123	1839	628	633	1131	1131					0.06050814114473724
AELTVARVL	9	Unmodified	_AELTVARVL_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2977600097656	2	486.297842	970.581131	0.64323	0.0003128	-2.4766	-0.0012044	-1.8334	-0.00089156	486.29726019242895	37.687	0.2951	37.687	37.524	37.819	0					17	9	3	0	0	0	0.20551	1	14747	14747		60.972	4.2509	1	572060	+		1124	14955	629	634	1132	1132					0.09466333339935318
AELVGKKTK	9	Unmodified	_AELVGKKTK_					0	0	0			REV__FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant	REV__FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7666931152344	2	487.305667	972.596781	-0.70052	-0.00034137	-0.8263	-0.00040266	-1.5268	-0.00074403	487.30555685147016	23.387	0.21564	23.387	23.229	23.445	0					6	4	2	0	0	0	0.60749	1	8016	8016		20.947	3.582	1	83818	+		1125	16756	630	635	1133	1133					0.10938619856983678
AEMAQNAV	8	Unmodified	_AEMAQNAV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.1944885253906	2	417.194728	832.374903	-0.31425	-0.0001311	-0.0075633	-3.1554E-06	-0.32182	-0.00013426	417.1947902759309	25.672	0.21515	25.672	25.565	25.78	0					9	3	3	0	0	0	0.28427	1	9011	9011		87.754	16.459	1	242160			1126	6049	631	636	1134	1134					-0.04798982830845944
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7877197265625	2	551.787315	1101.56008	1.3078	0.00072165	-0.34041	-0.00018783	0.96744	0.00053382	551.7872559767775	31.785	0.19372	31.785	31.682	31.876	0					14	8	2	0	0	0	0.080628	1	10224	10224		99.013	29.385	1	159250			1127	6049	632	637	1135	1135					0.01335999968773649
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7879028320312	2	551.787315	1101.56008	0.59158	0.00032642	0.23808	0.00013137	0.82966	0.0004578	551.7874686538627	32.057	0.25728	32.057	31.966	32.223	0					16	6	3	0	0	0	0.012989	1	11735	11735		131.62	66.151	1	1136900			1128	6049	632	637	1136	1136					0.01335999968773649
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.7882080078125	2	551.787315	1101.56008	0.26334	0.00014531	1.0274	0.00056692	1.2908	0.00071223	551.7880756376373	31.84	0.20283	31.84	31.762	31.965	0					16	8	3	0	0	0	0.11048	1	10569	10569		93.598	31.49	1	256900			1129	6049	632	637	1137	1137					0.01335999968773649
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7879028320312	2	551.787315	1101.56008	1.6206	0.00089424	-1.1192	-0.00061754	0.50146	0.0002767	551.7869413969344	32.041	0.29689	32.041	31.945	32.242	0					20	6	5	0	0	0	0.0098546	2	12129	12129;12172		143.37	61.133	1	1841000			1130	6049	632	637	1138;1139	1138					0.01335999968773649
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7874145507812	2	551.787315	1101.56008	1.1479	0.00063342	-0.62751	-0.00034625	0.52042	0.00028716	551.7869170204457	31.82	0.15117	31.82	31.746	31.897	0					9	5	2	0	0	0	0.2538	1	10993	10993		72.879	18.103	1	136540			1131	6049	632	637	1140	1140					0.01335999968773649
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7881469726562	2	551.787315	1101.56008	-1.3111	-0.00072344	1.7888	0.00098704	0.47771	0.0002636	551.7885169118418	31.836	0.15148	31.836	31.734	31.886	0					13	5	3	0	0	0	0.0042392	1	10986	10986		168.26	83.098	1	252150			1132	6049	632	637	1141	1141					0.01335999968773649
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7876586914062	2	551.787315	1101.56008	1.8175	0.0010029	-1.5237	-0.00084073	0.29385	0.00016214	551.7866718496227	32.008	0.31789	32.008	31.902	32.219	0					15	6	4	0	0	0	0.0098546	1	12035	12035		143.37	65.11	1	1452000			1133	6049	632	637	1142	1142					0.01335999968773649
AEMELQAKL	9	Unmodified	_AEMELQAKL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.772705078125	2	516.773342	1031.53213	0.32303	0.00016693	-0.48063	-0.00024838	-0.15761	-8.1447E-05	516.7731598792848	36.394	0.093174	36.394	36.353	36.446	0					9	4	3	0	0	0	0.34452	1	11932	11932		46.457	0.48454	1	80784			1134	6665	633	638	1143	1143					0.017626769886874172
AEMELQAKL	9	Unmodified	_AEMELQAKL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7731323242188	2	516.773342	1031.53213	0.04042	2.0888E-05	-0.33153	-0.00017133	-0.29111	-0.00015044	516.7732681936632	36.672	0.29913	36.672	36.485	36.784	0					15	8	3	0	0	0	0.19952	1	13853	13853		61.691	0.71934	1	322020			1135	6665	633	638	1144	1144					0.017626769886874172
AEMIGSKIF	9	Unmodified	_AEMIGSKIF_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.G150Afs*25|1|0.19|ENSG00000275395|chr19:39927915-39927915|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2648620605469	2	498.265153	994.515753	0.82329	0.00041022	-1.0155	-0.00050601	-0.19225	-9.5789E-05	498.2643142777057	41.596	0.21125	41.596	41.508	41.719	0					14	8	3	0	0	0	0.15163	1	16349	16349		67.494	7.3754	1	87904			1136	11803	634	639	1145	1145					0.018275958225899558
AEMIKYIQ	8	Unmodified	_AEMIKYIQ_					0	0	0		ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2649841308594	2	498.265153	994.515753	1.0244	0.00051044	-1.797	-0.00089536	-0.77252	-0.00038492	498.2646330809692	41.56	0.21209	41.56	41.477	41.689	0					7	5	2	0	0	0	0.49216	1	16537	16537		60.972	4.5381	1	122670			1137	8470	635	640	1146	1146					0.01827595822578587
AEMKAQEV	8	Unmodified	_AEMKAQEV_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3;ENST00000580376.5_1_17:61901002-61901722:-|nuORF	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.22308349609375	2	453.223485	904.432418	0.68836	0.00031198	-1.1583	-0.00052496	-0.46991	-0.00021297	453.2228040187049	21.056	0.26017	21.056	20.97	21.23	0					9	6	2	0	0	0	0.46013	1	6647	6647		64.207	0.901	1	376740			1138	2539	636	641	1147	1147					-0.02362140625268694
AEMKGSINK	9	Oxidation (M)	_AEM(Oxidation (M))KGSINK_		AEM(1)KGSINK		AEM(56)KGSINK	0	0	1			REV__tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	REV__tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2532958984375	2	497.255317	992.49608	-2.3061	-0.0011467	-2.0454	-0.0010171	-4.3514	-0.0021638	497.2544787461823	26.241	0.14405	26.241	26.192	26.336	0					6	3	2	0	0	0	0.24334	1	8429	8429		56.434	6.8977	1	141350	+		1139	22036	637	642	1148	1148		796			-0.0004678018815411633
AEMRPFIEI	9	Unmodified	_AEMRPFIEI_					0	0	0		MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant;MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant;nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR;MTR|p.R518Gfs*7|1|0.16|ENSG00000116984|chr1:236850378-236850378|C/-|frameshift_variant;MTR|p.F598Sfs*14|1|0.12|ENSG00000116984|chr1:236852615-236852615|T/-|frameshift_variant	MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant	MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.29150390625	2	553.289159	1104.56377	0.20611	0.00011404	3.5862	0.0019842	3.7923	0.0020983	553.2912375338351	25.718	0.11617	25.718	25.655	25.771	0					5	3	2	0	0	0	0.4966	1	8051	8051		32.812	0.85756	1	59592			1140	3016	638	643	1149	1149					0.015666697426240717
AEMTTRMV	8	Unmodified	_AEMTTRMV_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7249755859375	2	469.725338	937.436123	0.20175	9.4769E-05	-1.0927	-0.00051325	-0.8909	-0.00041848	469.7250273717364	27.424	0.22038	27.424	27.335	27.556	0					14	5	4	0	0	0	0.39125	1	9592	9592		71.877	21.853	1	324640			1141	7739	639	644	1150	1150					-0.03509794123044685
AEMTTRMV	8	Unmodified	_AEMTTRMV_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7257995605469	2	469.725338	937.436123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.216	1	27.216	26.716	27.716	0								0	0	0	1.7419	1	8649	8649		54.776	8.0099	1				1142	7739	639	644	1151	1151					-0.03509794123044685
AEMVSLIKSNL	11	Unmodified	_AEMVSLIKSNL_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.2267150878906	3	402.225046	1203.65331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.068	1	23.068	22.568	23.568	0								0	0	0	0.45674	1	6979	6979		22.562	1.5294	1		+		1143	13756	640	645	1152	1152					0.05962879631351825
AEMYVAKF	8	Unmodified	_AEMYVAKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2396545410156	2	479.738771	957.462989	0.018395	8.8248E-06	-0.32544	-0.00015613	-0.30705	-0.0001473	479.7385096930389	37.057	0.17106	37.057	36.951	37.122	0					14	9	2	0	0	0	0.58597	1	12132	12132		51.335	6.8044	1	94609			1144	6014	641	646	1153	1153					-0.017443622402197434
AEMYVAKF	8	Unmodified	_AEMYVAKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7384033203125	2	479.738771	957.462989	-0.20746	-9.9529E-05	-0.4562	-0.00021886	-0.66366	-0.00031839	479.73853519498283	37.356	0.35315	37.356	37.246	37.599	0					23	10	3	0	0	0	0.35045	1	14130	14130		76.774	5.4784	1	692090			1145	6014	641	646	1154	1154					-0.017443622402197434
AEMYVAKF	8	Unmodified	_AEMYVAKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7383728027344	2	479.738771	957.462989	-1.4044	-0.00067375	0.34561	0.0001658	-1.0588	-0.00050794	479.7389608538274	37.108	0.16965	37.108	37.042	37.212	0					18	9	3	0	0	0	0.41701	1	12555	12555		68.787	17.451	1	123960			1146	6014	641	646	1155	1155					-0.017443622402197434
AEMYVAKF	8	Unmodified	_AEMYVAKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.738525390625	2	479.738771	957.462989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.305	1	37.305	36.805	37.805	0								0	0	0	1.7419	1	14585	14585		51.335	17.82	1				1147	6014	641	646	1156	1156					-0.017443622402197434
AEMYVAKF	8	Unmodified	_AEMYVAKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7379455566406	2	479.738771	957.462989	-2.9261	-0.0014038	2.3369	0.0011211	-0.5892	-0.00028266	479.73975296258806	37.084	0.19533	37.084	37.013	37.209	0					16	9	2	0	0	0	0.46013	1	13273	13273		64.207	10.856	1	102660			1148	6014	641	646	1157	1157					-0.017443622402197434
AENEEEEEL	9	Unmodified	_AENEEEEEL_					0	0	0			REV__PEG3|p.D1361N|1|0.1|ENSG00000198300|chr19:56814361-56814361|C/T|missense_variant	REV__PEG3|p.D1361N|1|0.1|ENSG00000198300|chr19:56814361-56814361|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2202758789062	2	546.222391	1090.43023	-1.4998	-0.00081925	-2.3263	-0.0012707	-3.8261	-0.0020899	546.2209349945234	31.351	0.1876	31.351	31.287	31.475	0					7	4	2	0	0	0	0.18605	1	10786	10786		63.306	1.1989	1	77195	+		1149	21358	642	647	1158	1158					-0.11136942620032642
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7413940429688	2	519.740554	1037.46655	0.99012	0.00051461	0.045118	2.345E-05	1.0352	0.00053806	519.7406589341565	34.124	0.23716	34.124	34.027	34.265	0					10	7	2	0	0	0	0.40353	1	12046	12046		41.427	0.64845	1	87344			1150	7635	643	648	1159	1159					-0.050680209326628756
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7406616210938	2	519.740554	1037.46655	1.6161	0.00083997	-0.98379	-0.00051131	0.63234	0.00032865	519.7401956076585	34.286	0.45443	34.286	34.18	34.635	0					20	9	4	0	0	0	0.12278	1	13141	13141		74.165	26.508	1	461730			1151	7635	643	648	1160	1160					-0.050680209326628756
AENFIHAAK	9	Unmodified	_AENFIHAAK_					0	0	0			REV__MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant	REV__MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.1797180175781	3	334.178536	999.513779	-0.010011	-3.3456E-06	3.3361	0.0011148	3.3261	0.0011115	334.179684311089	14.617	0.16885	14.617	14.508	14.677	0					5	3	2	0	0	0	0.57706	1	3686	3686		24.519	7.0512	1	823000	+		1152	14521	644	649	1161	1161					0.014003031289803403
AENFKTIKN	9	Unmodified	_AENFKTIKN_					0	0	0		ENST00000561397.1_1_15:51289960-51293240:+|nuORF	ENST00000561397.1_1_15:51289960-51293240:+|nuORF	ENST00000561397.1_1_15:51289960-51293240:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7906494140625	2	532.790381	1063.56621	1.1435	0.00060927	-0.29684	-0.00015815	0.8467	0.00045112	532.7901584742273	24.693	0.28137	24.693	24.594	24.876	0					11	6	2	0	0	0	0.063823	1	7734	7734		90.37	10.657	1	1065700			1153	10709	645	650	1162	1162					0.036968414719467546
AENGEALGVL	10	Unmodified	_AENGEALGVL_					0	0	0		ENST00000558590.1_1_14:103395319-103397951:+|nuORF;ENSG00000166126|ENST00000299155|AMN;ENST00000541086.5_1_14:103389974-103397014:+|nuORF	ENST00000558590.1_1_14:103395319-103397951:+|nuORF	ENST00000558590.1_1_14:103395319-103397951:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2522277832031	2	486.753464	971.492375	0.0060997	2.9691E-06	-1.4909	-0.00072569	-1.4848	-0.00072272	486.75321173304707	22.34	0.2635	22.34	22.207	22.47	0					12	7	2	0	0	0	0.39566	1	6280	6280		56.721	15.943	1	126740			1154	5859	646	651	1163	1163					0.005488733096171927
AENGKSNFL	9	Unmodified	_AENGKSNFL_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.24591064453125	2	490.245806	978.47706	-0.046548	-2.282E-05	-0.17077	-8.3717E-05	-0.21731	-0.00010654	490.2456995253318	27.295	0.20549	27.295	27.226	27.432	0					13	8	2	0	0	0	0.21222	1	8400	8400		45.022	2.5477	1	86660			1155	266;267	647	652	1164	1164					-0.013039934875678227
AENGKSNFL	9	Unmodified	_AENGKSNFL_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2453308105469	2	490.245806	978.47706	-0.47625	-0.00023348	-0.57692	-0.00028283	-1.0532	-0.00051631	490.2456166437869	27.614	0.47647	27.614	27.448	27.924	0					21	11	3	0	0	0	0.043448	1	9659	9659		101.46	16.544	1	525750			1156	266;267	647	652	1165	1165					-0.013039934875678227
AENGKSNFL	9	Unmodified	_AENGKSNFL_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.24554443359375	2	490.245806	978.47706	0.59694	0.00029265	-1.0332	-0.00050654	-0.4363	-0.00021389	490.24521931536526	27.609	0.75865	27.609	27.254	28.012	0					32	15	4	0	0	0	0.073657	1	10012	10012		80.455	16.247	1	1645300			1157	266;267	647	652	1166	1166					-0.013039934875678227
AENGKSNFL	9	Unmodified	_AENGKSNFL_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.245361328125	2	490.245806	978.47706	-0.11773	-5.7718E-05	0.52586	0.0002578	0.40813	0.00020008	490.24609482397847	27.418	0.17284	27.418	27.333	27.505	0					11	4	3	0	0	0	0.22823	1	8961	8961		51.193	8.7182	1	182920			1158	266;267	647	652	1167	1167					-0.013039934875678227
AENGKSNFL	9	Unmodified	_AENGKSNFL_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2457275390625	2	490.245806	978.47706	-2.7935	-0.0013695	2.6451	0.0012968	-0.14836	-7.2732E-05	490.24692905356784	27.406	0.54882	27.406	27.279	27.828	0					20	13	3	0	0	0	0.22823	1	8952	8952		60.118	6.7668	1	201160			1159	266;267	647	652	1168	1168					-0.013039934875678227
AENGKSNFL	9	Unmodified	_AENGKSNFL_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2457275390625	2	490.245806	978.47706	0.77163	0.00037829	-0.83027	-0.00040704	-0.058637	-2.8747E-05	490.24541726785293	27.551	0.6263	27.551	27.187	27.813	0					21	12	3	0	0	0	0.15558	1	9885	9885		60.118	8.7828	1	1497100			1160	266;267	647	652	1169	1169					-0.013039934875678227
AENGTGLLL	9	Unmodified	_AENGTGLLL_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2454833984375	2	444.245275	886.475997	-0.37231	-0.0001654	0.37447	0.00016635	0.0021556	9.576E-07	444.24533029128537	21.244	0.55956	21.244	20.959	21.518	0					27	13	3	0	0	0	0.51817	1	6660	6660		30.504	2.6214	1	325660	+		1161	15144	648	653	1170	1170					0.028217921435384596
AENIPNLP	8	Unmodified	_AENIPNLP_					0	0	0		ENST00000488866.1_1_2:44445059-44445709:+|nuORF;nc|ENSG00000138032|O75688-3|PPM1B;nc|ENSG00000138032|O75688-4|PPM1B;nc|ENSG00000138032|O75688-2|PPM1B;ENSG00000138032|ENST00000282412|PPM1B	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.2318420410156	2	434.232168	866.449782	0.20368	8.8446E-05	-1.6504	-0.00071664	-1.4467	-0.00062819	434.2315410408045	34.124	0.09668	34.124	34.073	34.17	0					8	4	2	0	0	0	0.66372	1	11135	11135		38.806	1.647	1	55440			1162	4217	649	654	1171	1171					0.011215229720392017
AENKAKINM	9	Unmodified	_AENKAKINM_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7712097167969	2	509.771134	1017.52771	0.26101	0.00013306	-0.8277	-0.00042194	-0.56669	-0.00028888	509.77096887266254	18.993	0.24795	18.993	18.802	19.05	0					6	5	2	0	0	0	0.28504	1	5939	5939		44.377	18.803	1	178600			1163	3889	650	655	1172	1172					0.019652125657671604
AENKDEIAL	9	Unmodified	_AENKDEIAL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000429133.5_1_2:216974075-216982480:+|nuORF;ENST00000476360.1_1_2:216974075-216981630:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7585144042969	2	501.758746	1001.50294	0.14306	7.178E-05	-0.50671	-0.00025425	-0.36365	-0.00018247	501.758407609625	30.547	0.41161	30.547	30.431	30.842	0					23	11	3	0	0	0	0.04067	1	10407	10407		98.582	26.705	1	1348900			1164	1615	651	656	1173	1173					0.002248559640406711
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.2046203613281	3	358.204751	1071.59242	0.44397	0.00015903	-1.3757	-0.00049279	-0.93175	-0.00033376	358.20432192164515	20.882	0.1687	20.882	20.832	21	0					9	5	3	0	0	0	0.10506	1	5669	5669		78.264	10.77	1	197920			1165	2445	652	657	1174	1174					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8037719726562	2	536.803488	1071.59242	0.70673	0.00037938	-0.054513	-2.9263E-05	0.65222	0.00035011	536.8034802223101	20.913	0.12607	20.913	20.825	20.951	0					8	4	3	0	0	0	0.0073977	1	5661	5661		143.37	24.631	1	255020			1166	2445	652	657	1175	1175					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8035278320312	2	536.803488	1071.59242	-0.41904	-0.00022494	0.26019	0.00013967	-0.15884	-8.5268E-05	536.803485347847	20.894	0.64726	20.894	20.814	21.462	0					50	20	5	0	0	0	0.0061461	2	5892	5892;6053		148.69	17.659	1	17348000			1167	2445	652	657	1176;1177	1176					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.20465087890625	3	358.204751	1071.59242	-0.90288	-0.00032342	0.66622	0.00023864	-0.23666	-8.4774E-05	358.2049868792334	20.894	0.4762	20.894	20.814	21.291	0					33	15	5	0	0	0	0.029571	1	5901	5901		109.44	12.774	1	8038100			1168	2445	652	657	1178	1178					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8037109375	2	536.803488	1071.59242	1.8593	0.00099806	-1.7017	-0.00091346	0.15759	8.4597E-05	536.8026102034872	21.121	0.96181	21.121	20.863	21.825	0					48	19	4	0	0	0	2.6499E-05	1	6938	6938		199.89	54.736	1	61597000			1169	2445	652	657	1179	1179					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8036499023438	2	536.803488	1071.59242	1.0428	0.00055979	-1.0125	-0.00054352	0.030322	1.6277E-05	536.8027812197896	20.984	0.67388	20.984	20.825	21.499	0					33	15	5	0	0	0	4.8049E-05	1	5991	5991		195.05	49.89	1	16576000			1170	2445	652	657	1180	1180					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.20440673828125	3	358.204751	1071.59242	-0.090809	-3.2528E-05	-0.25318	-9.0692E-05	-0.34399	-0.00012322	358.2046628730198	20.984	0.34204	20.984	20.919	21.261	0					23	8	5	0	0	0	0.02953	1	5992	5992		109.48	15.881	1	10592000			1171	2445	652	657	1181	1181					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8040161132812	2	536.803488	1071.59242	-1.4086	-0.00075617	1.5509	0.00083251	0.14221	7.6341E-05	536.8041699934904	21.013	0.57646	21.013	20.859	21.435	0					32	13	5	0	0	0	0.0036779	1	5986	5986		160.82	42.079	1	8492200			1172	2445	652	657	1182	1182					0.05949110643427957
AENKEIQKL	9	Unmodified	_AENKEIQKL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.2046813964844	3	358.204751	1071.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.143	1	21.143	20.643	21.643	0								0	0	0	0.015103	1	6834	6834		104.01	14.985	1				1173	2445	652	657	1183	1183					0.05949110643427957
AENLLKPI	8	Unmodified	_AENLLKPI_					0	0	0		LILRA4|p.S309Qfs*2|1|0.4|ENSG00000239961|chr19:54337427-54337428|-/G|frameshift_variant;LILRA4|p.A360Qfs*8|1|0.17|ENSG00000239961|chr19:54337018-54337018|C/-|frameshift_variant;ENSG00000239961|ENST00000291759|LILRA4	LILRA4|p.S309Qfs*2|1|0.4|ENSG00000239961|chr19:54337427-54337428|-/G|frameshift_variant	LILRA4|p.S309Qfs*2|1|0.4|ENSG00000239961|chr19:54337427-54337428|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.27374267578125	2	449.273835	896.533118	-1.1808	-0.00053049	0.65432	0.00029397	-0.52645	-0.00023652	449.2741936937509	26.449	0.14915	26.449	26.376	26.525	0					10	5	2	0	0	0	0.61938	1	8309	8309		45.952	0	1	85113			1174	7927	653	658	1184	1184					0.08071259419898524
AENLLVISHFS	11	Unmodified	_AENLLVISHFS_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.55572509765625	3	410.555672	1228.64519	-0.48216	-0.00019795	0.37212	0.00015278	-0.11004	-4.5177E-05	410.55594173721437	25.907	0.24819	25.907	25.718	25.966	0					6	3	2	0	0	0	0.74458	1	9101	9101		23.378	0	1	298950			1175	11513	654	659	1185	1185					0.04001068706224942
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2539978027344	2	503.253631	1004.49271	-0.064454	-3.2437E-05	0.80671	0.00040598	0.74225	0.00037354	503.2543031148518	26.711	0.36514	26.711	26.481	26.847	0					17	8	3	0	0	0	0.16806	1	9238	9238		65.465	7.2355	1	513490			1176	5043	655	660	1186	1186					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.25341796875	2	503.253631	1004.49271	0.99981	0.00050316	-1.1466	-0.00057705	-0.14682	-7.389E-05	503.25309543129083	26.719	0.36768	26.719	26.46	26.828	0					11	7	2	0	0	0	0.1424	1	9610	9610		69.628	23.655	1	654080			1177	5043	655	660	1187	1187					-0.009357069705288268
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.79638671875	2	559.795663	1117.57677	-0.45003	-0.00025193	1.5652	0.00087619	1.1152	0.00062426	559.7967968945865	34.891	0.095695	34.891	34.841	34.937	0					7	4	2	0	0	0	0.58189	1	11780	11780		36.447	2.2742	1	74209			1178	5043	656	661	1188	1188					0.022688241263722375
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.7964477539062	2	559.795663	1117.57677	1.7862	0.00099993	-0.52748	-0.00029528	1.2588	0.00070465	559.795298345219	35.107	0.29163	35.107	34.998	35.29	0					21	8	3	0	0	0	0.20981	1	13587	13587		78.264	78.264	1	515680			1179	5043	656	661	1189	1189					0.022688241263722375
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.7962646484375	2	559.795663	1117.57677	-0.078902	-4.4169E-05	1.0079	0.0005642	0.92896	0.00052003	559.7963464665887	35.098	0.26602	35.098	35.015	35.281	0					16	7	3	0	0	0	0.27065	1	13565	13565		70.816	17.465	1	396330			1180	5043	656	661	1190	1190					0.022688241263722375
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7960815429688	2	559.795663	1117.57677	3.4697	0.0019423	-2.4916	-0.0013948	0.9781	0.00054754	559.7941375323264	35.008	0.46765	35.008	34.897	35.364	0					29	9	4	0	0	0	0.14151	1	13484	13484		88.177	26.486	1	1693800			1181	5043	656	661	1191	1191					0.022688241263722375
AENSKGRDTV	10	Unmodified	_AENSKGRDTV_					0	0	0		ENST00000530117.5_1_1:205027631-205031234:+|nuORF;ENSG00000184144|ENST00000331830|CNTN2	ENST00000530117.5_1_1:205027631-205031234:+|nuORF	ENST00000530117.5_1_1:205027631-205031234:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7697143554688	2	538.770177	1075.5258	0.30079	0.00016206	-0.46984	-0.00025313	-0.16905	-9.1077E-05	538.7695245991614	29.843	0.26579	29.843	29.683	29.949	0					9	5	3	0	0	0	0.536	1	11104	11104		41.427	1.3684	1	329870			1182	6999	657	662	1192	1192					-0.00894124918477246
AEPAAALALL	10	Unmodified	_AEPAAALALL_					0	0	0		ANGPTL6|p.G354Afs*115|1|0.27|ENSG00000130812|chr19:10093510-10093510|C/-|frameshift_variant;ENSG00000130812|ENST00000253109|ANGPTL6	ANGPTL6|p.G354Afs*115|1|0.27|ENSG00000130812|chr19:10093510-10093510|C/-|frameshift_variant	ANGPTL6|p.G354Afs*115|1|0.27|ENSG00000130812|chr19:10093510-10093510|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2789306640625	2	470.279118	938.543683	2.5327	0.0011911	-3.0932	-0.0014547	-0.56051	-0.0002636	470.2777277246244	42.293	0.19627	42.293	42.246	42.443	0					8	5	2	0	0	0	0.47621	1	16898	16898		47.916	0.25827	1	59097			1183	146	658	663	1193	1193					0.0719524207431732
AEPAAKQK	8	Unmodified	_AEPAAKQK_					0	0	0			REV__ENST00000494618.1_1_2:232322276-232325237:-|nuORF	REV__ENST00000494618.1_1_2:232322276-232325237:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.7391357421875	2	421.74016	841.465767	-1.2202	-0.0005146	1.4971	0.00063137	0.27687	0.00011677	421.7402411955511	24.986	0.13083	24.986	24.873	25.004	0					6	4	2	0	0	0	0.76283	1	7705	7705		25.45	2.4135	1	32161	+		1184	14096	659	664	1194	1194					0.03869229208953584
AEPADLQGMLL	11	Unmodified	_AEPADLQGMLL_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.53277587890625	3	386.53388	1156.57981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.965	1	27.965	27.465	28.465	0								0	0	0	0.45674	1	8967	8967		9.2118	0	1				1185	2202	660	665	1195	1195					0.00778331188894299
AEPDGALLH	9	Unmodified	_AEPDGALLH_					0	0	0			REV__NOXA1|p.L249Sfs*66|1|0.4|ENSG00000188747|chr9:137431278-137431278|C/-|frameshift_variant	REV__NOXA1|p.L249Sfs*66|1|0.4|ENSG00000188747|chr9:137431278-137431278|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7342224121094	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.478	1	26.478	25.978	26.978	0								0	0	0	0.27166	1	8053	8053		40.573	1.7665	1		+		1186	21300	661	666	1196	1196					-0.008273785162714375
AEPGHGAKSL	10	Unmodified	_AEPGHGAKSL_					0	0	0			REV__ENST00000478399.5_1_3:119298211-119298877:+|nuORF	REV__ENST00000478399.5_1_3:119298211-119298877:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7532043457031	2	483.753798	965.493044	-1.2631	-0.00061105	0.12686	6.1368E-05	-1.1363	-0.00054968	483.75382478203863	23.307	0.25014	23.307	23.211	23.461	0					11	8	2	0	0	0	0.31613	1	6993	6993		65.465	2.487	1	92359	+		1187	19564	662	667	1197	1197					0.008917127493305088
AEPNYVAPNPA	11	Unmodified	_AEPNYVAPNPA_					0	0	0			REV__nc|ENSG00000117751|Q12972-3|PPP1R8	REV__nc|ENSG00000117751|Q12972-3|PPP1R8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.7767333984375	2	571.77747	1141.54039	-0.056065	-3.2057E-05	1.9235	0.0010998	1.8674	0.0010678	572.2824015822383	24.087	0.31562	24.087	24.041	24.356	0					11	7	2	0	0	0	0.66391	1	8094	8094		35.152	5.3105	1	223660	+		1188	14206	663	668	1198	1198					-0.02472052770326627
AEPQLLDTH	9	Unmodified	_AEPQLLDTH_					0	0	0		ENSG00000175213|ENST00000311764|ZNF408	ENSG00000175213|ENST00000311764|ZNF408	ENSG00000175213|ENST00000311764|ZNF408	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2603759765625	2	512.258914	1022.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.036	1	23.036	22.536	23.536	0								0	0	0	0.3368	1	6964	6964		27.882	1.1893	1				1189	6539	664	669	1199	1199					-0.00707724316112035
AEQAKEIQL	9	Unmodified	_AEQAKEIQL_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.282470703125	2	515.282389	1028.55022	1.1912	0.00061381	-0.25861	-0.00013326	0.93261	0.00048056	515.2821104633031	29.975	0.20357	29.975	29.895	30.098	0					7	5	2	0	0	0	0.25761	1	10770	10770		54.722	3.5297	1	212050			1190	1511	665	670	1200	1200					0.03709135235044414
AEQATRIV	8	Unmodified	_AEQATRIV_					0	0	0		ENST00000469374.5_1_1:2303893-2316539:-|nuORF;ENST00000419785.1_1_1:2303243-2316539:-|nuORF;MORN1|p.E226Gfs*45|1|0.04|ENSG00000116151|chr1:2372548-2372549|TT/-|frameshift_variant;nc|ENSG00000116151|Q5T089-2|MORN1;ENST00000606372.5_1_1:2263981-2323005:-|nuORF;ENSG00000116151|ENST00000378531|MORN1	ENST00000469374.5_1_1:2303893-2316539:-|nuORF	ENST00000469374.5_1_1:2303893-2316539:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2507629394531	2	444.250892	886.48723	-1.1581	-0.00051449	-0.22175	-9.8514E-05	-1.3799	-0.000613	444.2508483382422	27.579	0.097162	27.579	27.523	27.62	0					6	3	2	0	0	0	0.69548	1	8816	8816		34.173	0	1	58800			1191	2966	666	671	1201	1201					0.03944614237650512
AEQELLLTL	9	Unmodified	_AEQELLLTL_					0	0	0		ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000511830.2_1_5:69390488-69422514:-|nuORF	ENST00000511830.2_1_5:69390488-69422514:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2962036132812	2	515.294965	1028.57538	1.194	0.00061526	1.8461	0.00095131	3.0401	0.0015666	515.2958403853594	26.005	0.59537	26.005	25.744	26.34	0					16	12	2	0	0	0	0.25716	1	8928	8928		54.776	7.119	1	852810			1192	7982	667	672	1202	1202					0.06223190037621862
AEQESARQL	9	Unmodified	_AEQESARQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2601318359375	2	516.259445	1030.50434	-0.04458	-2.3015E-05	1.2226	0.0006312	1.1781	0.00060819	516.2599752912413	19.877	0.17212	19.877	19.779	19.951	0					10	5	3	0	0	0	0.02953	1	5449	5449		109.48	29.766	1	202420			1193	6707	668	673	1203	1203					-0.009695099471855428
AEQESARQL	9	Unmodified	_AEQESARQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2593383789062	2	516.259445	1030.50434	3.2774	0.001692	-3.2646	-0.0016854	0.012878	6.6483E-06	516.2576458331258	20.068	0.21527	20.068	19.961	20.176	0					7	4	2	0	0	0	0.021015	1	6322	6322		120.31	37.555	1	1441600			1194	6707	668	673	1204	1204					-0.009695099471855428
AEQHKHCIG	9	Unmodified	_AEQHKHCIG_					0	0	0			REV__TRIM41|p.P228H|1|0.21|ENSG00000146063|chr5:181224682-181224682|C/A|missense_variant	REV__TRIM41|p.P228H|1|0.21|ENSG00000146063|chr5:181224682-181224682|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7459411621094	2	511.74545	1021.47635	-0.44393	-0.00022718	1.2592	0.00064437	0.81524	0.00041719	511.74588238817654	11.19	0.13065	11.19	11.116	11.247	0					9	4	3	0	0	0	0.53083	1	2247	2247		29.15	1.2673	1	174010	+		1195	22234	669	674	1205	1205					-0.03353111408273435
AEQIKHIL	8	Unmodified	_AEQIKHIL_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.28466796875	2	476.284734	950.554916	-0.16263	-7.746E-05	-0.54975	-0.00026184	-0.71239	-0.0003393	476.28454163835636	25.522	0.18413	25.522	25.463	25.648	0					9	6	2	0	0	0	0.37144	1	7677	7677		74.255	0	1	128320			1196	3841	670	675	1206	1206					0.07766064168458797
AEQIKHIL	8	Unmodified	_AEQIKHIL_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2846374511719	2	476.284734	950.554916	-0.38624	-0.00018396	0.17373	8.2745E-05	-0.21251	-0.00010121	476.2848401618933	25.871	0.26736	25.871	25.732	26	0					6	4	2	0	0	0	0.28427	1	8862	8862		87.754	5.4493	1	554230			1197	3841	670	675	1207	1207					0.07766064168458797
AEQIKHIL	8	Unmodified	_AEQIKHIL_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2852783203125	2	476.284734	950.554916	-0.38051	-0.00018123	-0.030703	-1.4623E-05	-0.41122	-0.00019586	476.28489067951466	25.645	0.21882	25.645	25.57	25.789	0					10	5	3	0	0	0	0.30437	1	8194	8194		82.305	2.854	1	152150			1198	3841	670	675	1208	1208					0.07766064168458797
AEQKKKQAE	9	Unmodified	_AEQKKKQAE_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2935180664062	2	530.293288	1058.57202	1.6382	0.00086875	-1.5266	-0.00080952	0.11168	5.9223E-05	530.2925828081462	18.889	0.2657	18.889	18.83	19.096	0					10	5	2	0	0	0	0.070005	1	5752	5752		88.177	2.3151	1	1701500	+		1199	15048	671	676	1209	1209					0.04507939983614051
AEQKLAEVD	9	Unmodified	_AEQKLAEVD_					0	0	0			REV__ENSG00000168434|ENST00000307149|COG7	REV__ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7586669921875	2	501.758746	1001.50294	0.95815	0.00048076	-0.60207	-0.00030209	0.35608	0.00017867	501.75832209931485	22.767	0.56049	22.767	22.451	23.012	0					24	11	3	0	0	0	0.11898	1	7783	7783		75.043	4.2271	1	958360	+		1200	16259	672	677	1210	1210					0.002248559640520398
AEQKLQQTL	9	Unmodified	_AEQKLQQTL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7957763671875	2	529.795663	1057.57677	0.11407	6.0433E-05	0.23026	0.00012199	0.34433	0.00018242	529.7956507727764	26.12	0.13344	26.12	26.031	26.164	0					9	3	3	0	0	0	0.017741	1	8960	8960		125.71	26.7	1	1337800			1201	3729	673	678	1211	1211					0.05028824126384279
AEQKLQQTL	9	Unmodified	_AEQKLQQTL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7963256835938	2	529.795663	1057.57677	1.7344	0.00091887	0.6225	0.0003298	2.3569	0.0012487	529.795825043477	26.076	0.26501	26.076	25.967	26.232	0					12	5	4	0	0	0	0.17062	1	9305	9305		65.157	8.525	1	823940			1202	3729	673	678	1212	1212					0.05028824126384279
AEQKLQQTL	9	Unmodified	_AEQKLQQTL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7957153320312	2	529.795663	1057.57677	0.28649	0.00015178	0.032052	1.6981E-05	0.31855	0.00016876	529.7948756507873	26.059	0.16755	26.059	26	26.168	0					5	3	2	0	0	0	0.17062	1	9296	9296		65.157	17.198	1	162540			1203	3729	673	678	1213	1213					0.05028824126384279
AEQKLQQTL	9	Unmodified	_AEQKLQQTL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7958984375	2	529.795663	1057.57677	-1.1919	-0.00063144	1.9655	0.0010413	0.77366	0.00040988	529.7964174715414	25.902	0.18288	25.902	25.767	25.95	0					6	2	3	0	0	0	0.014413	1	8267	8267		131.62	22.177	1	211670			1204	3729	673	678	1214	1214					0.05028824126384279
AEQKLQQTL	9	Unmodified	_AEQKLQQTL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7960815429688	2	529.795663	1057.57677	3.445	0.0018252	-2.1919	-0.0011613	1.2531	0.00066388	529.7942944265753	26.026	0.16734	26.026	25.966	26.134	0					10	3	4	0	0	0	0.024312	1	9156	9156		114.86	28.996	1	1347100			1205	3729	673	678	1215	1215					0.05028824126384279
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7822265625	2	540.782222	1079.54989	1.9111	0.0010335	-1.0763	-0.00058204	0.83482	0.00045145	540.7815826669573	31.862	0.33181	31.862	31.779	32.111	0					24	8	4	0	0	0	0.035106	1	11633	11633		104.01	34.386	1	567640			1206	2871	674	679	1216	1216					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7830810546875	2	540.782222	1079.54989	0.285	0.00015412	-3.174	-0.0017164	-2.889	-0.0015623	540.7823994051307	31.879	0.17456	31.879	31.764	31.938	0					12	4	4	0	0	0	0.18416	1	11643	11643		63.534	15.574	1	372110			1207	2871	674	679	1217	1217					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2840576171875	2	540.782222	1079.54989	0.049498	2.6767E-05	0.89871	0.000486	0.9482	0.00051277	540.7826771540005	31.659	0.24453	31.659	31.552	31.796	0					25	9	4	0	0	0	0.25761	1	10487	10487		54.722	1.3709	1	676300			1208	2871	674	679	1218	1218					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7823486328125	2	540.782222	1079.54989	1.9956	0.0010792	-2.2417	-0.0012123	-0.24611	-0.00013309	540.7808755538159	31.854	0.5383	31.854	31.75	32.289	0					28	11	4	0	0	0	0.019258	1	12042	12042		123.21	61.101	1	3437600			1209	2871	674	679	1219	1219					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7830200195312	2	540.782222	1079.54989	1.0398	0.00056231	0.19654	0.00010628	1.2363	0.00066859	540.7821781128692	31.639	0.30782	31.639	31.516	31.823	0					21	8	4	0	0	0	0.037712	1	10907	10907		101.46	50.267	1	488490			1210	2871	674	679	1220	1220					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7823486328125	2	540.782222	1079.54989	-1.4821	-0.00080147	1.8702	0.0010114	0.38812	0.00020989	540.7831716526302	31.631	0.24339	31.631	31.503	31.746	0					15	6	3	0	0	0	0.090954	1	10899	10899		81.525	30.332	1	489910			1211	2871	674	679	1221	1221					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.782470703125	2	540.782222	1079.54989	2.0794	0.0011245	-1.8234	-0.00098607	0.25597	0.00013842	540.7811232692871	31.845	0.46901	31.845	31.701	32.17	0					24	9	4	0	0	0	0.037712	1	11940	11940		101.46	35.994	1	3254300			1212	2871	674	679	1222	1222					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.782958984375	2	540.782222	1079.54989	3.5024	0.001894	-3.7081	-0.0020053	-0.20572	-0.00011125	540.7801735040441	31.847	0.56898	31.847	31.684	32.253	0					20	11	4	0	0	0	0.019258	1	11933	11933		123.21	43.496	1	3671800			1213	2871	674	679	1223	1223					0.013297155152031337
AEQLVHVV	8	Unmodified	_AEQLVHVV_					0	0	0		VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant;ENST00000521932.1_1_8:100168860-100253210:+|nuORF;nc|ENSG00000132549|Q7Z7G8-4|VPS13B	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.755859375	2	447.75581	893.497067	-0.114	-5.1043E-05	-0.78258	-0.00035041	-0.89658	-0.00040145	447.7554493771228	32.723	0.16668	32.723	32.65	32.817	0					6	4	2	0	0	0	0.43813	1	12459	12459		66.429	22.312	1	53324			1214	3797	675	680	1224	1224					0.046058022430429446
AEQPASPK	8	Unmodified	_AEQPASPK_					0	0	0			REV__ENSG00000161904|ENST00000293760|LEMD2	REV__ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2166748046875	2	414.216517	826.418482	0.062697	2.597E-05	1.1345	0.00046992	1.1972	0.00049589	414.2164618975147	14.655	0.70061	14.655	14.463	15.164	0					21	14	2	0	0	0	0.51384	1	3835	3835		58.782	0	1	461660	+		1215	15790	676	681	1225	1225					-0.0016705006205484096
AEQRGELAL	9	Unmodified	_AEQRGELAL_					0	0	0		ENST00000546453.1_1_12:53215658-53224087:-|nuORF;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENSG00000170423|ENST00000304620|KRT78;CON__Q8N1N4-2;CON__Q7RTT2;CON__P07744;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5;CON__O95678;ENSG00000170454|ENST00000252245|KRT75;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q8BGZ7;CON__O95678;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	CON__Q8BGZ7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7666931152344	2	493.766906	985.519259	-0.47575	-0.00023491	0.35055	0.00017309	-0.1252	-6.182E-05	493.7671639096905	29.931	0.76553	29.931	29.801	30.566	0					48	19	5	0	0	0	0.10506	1	10711	10711		78.264	0	1	13546000		+	1216	666;663;628;640	677	682	1226	1226					0.025919819208070294
AEQRVVAP	8	Unmodified	_AEQRVVAP_					0	0	0			REV__ENST00000484092.1_1_3:117716162-117716402:-|nuORF	REV__ENST00000484092.1_1_3:117716162-117716402:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2456970214844	2	435.245609	868.476666	-0.84516	-0.00036785	0.33341	0.00014511	-0.51176	-0.00022274	435.24567679910217	33.633	0.13819	33.633	33.565	33.703	0					10	5	2	0	0	0	0.59411	1	11295	11295		50.025	0.58299	1	131390	+		1217	19631	678	683	1227	1227					0.037166315832337204
AEQVKPEELG	10	Unmodified	_AEQVKPEELG_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.287353515625	2	550.285128	1098.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.731	1	31.731	31.231	32.231	0								0	0	0	0.32041	1	10213	10213		47.657	3.2801	1		+		1218	17218	679	684	1228	1228					0.010368140268383286
AEQWQRGKA	9	Unmodified	_AEQWQRGKA_					0	0	0		ENST00000395254.7_1_10:64136134-64136248:+|nuORF	ENST00000395254.7_1_10:64136134-64136248:+|nuORF	ENST00000395254.7_1_10:64136134-64136248:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2775268554688	2	537.277972	1072.54139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.386	1	13.386	12.886	13.886	0								0	0	0	0.28666	1	2621	2621		37.812	2.6595	1				1219	9191	680	685	1229	1229					0.008022063892440201
AERAINTL	8	Unmodified	_AERAINTL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.25079345703125	2	444.250892	886.48723	0.58755	0.00026102	-1.4673	-0.00065186	-0.87979	-0.00039085	444.2502761001882	26.005	0.43103	26.005	25.744	26.175	0					12	8	2	0	0	0	0.42778	1	8910	8910		67.494	10.773	1	465950			1220	1384	681	686	1230	1230					0.03944614237661881
AERDVYTGDAL	11	Unmodified	_AERDVYTGDAL_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.291015625	2	605.290942	1208.56733	-0.46832	-0.00028347	0.32397	0.0001961	-0.14435	-8.7373E-05	605.2911310194636	32.5	0.25774	32.5	32.41	32.668	0					12	6	3	0	0	0	0.36734	1	11945	11945		55.084	7.1244	1	274190			1221	1012	682	687	1231	1231					-0.0286098894978295
AERDVYTGDAL	11	Unmodified	_AERDVYTGDAL_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.29150390625	2	605.290942	1208.56733	0.41702	0.00025242	-0.51403	-0.00031114	-0.097014	-5.8722E-05	605.2907760823205	32.504	0.16447	32.504	32.432	32.596	0					9	4	3	0	0	0	0.50799	1	12357	12357		43.651	6.4917	1	113880			1222	1012	682	687	1232	1232					-0.0286098894978295
AEREEKRVL	9	Unmodified	_AEREEKRVL_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.215576171875	3	377.21565	1128.62512	0.46088	0.00017385	-0.87265	-0.00032918	-0.41177	-0.00015533	377.2153480208973	16.887	0.26153	16.887	16.785	17.047	0					10	5	3	0	0	0	0.41113	1	4927	4927		56.434	13.57	1	556390			1223	3440	683	688	1233	1233					0.06595317766277731
AEREIVRDI	9	Unmodified	_AEREIVRDI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.54010009765625	3	367.540134	1099.59857	1.1286	0.00041482	-0.82171	-0.00030201	0.30694	0.00011281	367.53973181839217	26.619	0.71291	26.619	26.359	27.072	0					33	14	3	0	0	0	0.36892	1	9561	9561		51.528	18.777	1	1134700			1224	1545;6995;2493;7397;7857	684	689	1234	1234					0.052756288749378655
AEREIVRDI	9	Unmodified	_AEREIVRDI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8071899414062	2	550.806562	1099.59857	1.1519	0.0006345	-0.067491	-3.7174E-05	1.0845	0.00059732	550.806449362705	26.47	0.13996	26.47	26.383	26.523	0					5	3	2	0	0	0	0.43488	1	8521	8521		38.754	26.547	1	108640			1225	1545;6995;2493;7397;7857	684	689	1235	1235					0.052756288749378655
AERELVAVI	9	Unmodified	_AERELVAVI_					0	0	0		ENST00000520635.5_1_8:82627220-82630434:-|nuORF;ENST00000524339.5_1_8:82626874-82630434:-|nuORF;ENST00000517353.5_1_8:82627029-82645114:-|nuORF;ENST00000519820.5_1_8:82626874-82633516:-|nuORF;nc|ENSG00000104231|Q8TCF1-4|ZFAND1;nc|ENSG00000104231|Q8TCF1-3|ZFAND1;ENSG00000104231|ENST00000220669|ZFAND1	ENST00000520635.5_1_8:82627220-82630434:-|nuORF	ENST00000520635.5_1_8:82627220-82630434:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.29534912109375	2	500.295299	998.576045	-1.0149	-0.00050773	0.75674	0.0003786	-0.25813	-0.00012914	500.2956877804323	34.083	0.37417	34.083	33.963	34.337	0					28	16	2	0	0	0	0.2873	1	11526	11526		51.335	3.6781	1	405530			1226	2274	685	690	1236	1236					0.07670029477310436
AERGLGSFVV	10	Unmodified	_AERGLGSFVV_					0	0	0		ENST00000425389.2_1_7:150070026-150070173:+|nuORF;REPIN1|p.S373Pfs*242|1|0.28|ENSG00000214022|chr7:150372350-150372350|C/-|frameshift_variant	ENST00000425389.2_1_7:150070026-150070173:+|nuORF	ENST00000425389.2_1_7:150070026-150070173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7859497070312	2	517.785099	1033.55564	-1.4406	-0.00074594	0.35814	0.00018544	-1.0825	-0.0005605	517.7854812786591	29.235	0.2851	29.235	29.13	29.415	0					12	7	2	0	0	0	0.44292	1	9803	9803		56.721	28.467	1	100150			1227	9432	686	691	1237	1237					0.04020858817534645
AERIEKLI	8	Unmodified	_AERIEKLI_					0	0	0			REV__ENSG00000068366|ENST00000672401|ACSL4	REV__ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2975769042969	2	486.297842	970.581131	0.82827	0.00040279	-2.1052	-0.0010237	-1.2769	-0.00062096	486.2972799129201	37.605	0.25241	37.605	37.501	37.754	0					12	5	3	0	0	0	0.49216	1	14725	14725		60.972	0	1	699620	+		1228	13146	687	692	1238	1238					0.09466333339935318
AERLETLK	8	Unmodified	_AERLETLK_					0	0	0			REV__nc|ENSG00000149488|Q8TDI7-3|TMC2	REV__nc|ENSG00000149488|Q8TDI7-3|TMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.279541015625	2	480.279649	958.544745	0.045369	2.179E-05	-0.81886	-0.00039328	-0.77349	-0.00037149	480.27937991035554	24.622	0.15435	24.622	24.53	24.684	0					8	4	2	0	0	0	0.57171	1	7299	7299		52.937	2.9122	1	71968	+		1229	15424	688	693	1239	1239					0.06381456443227762
AERLGNFCR	9	Unmodified	_AERLGNFCR_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;ENST00000562619.1_1_15:42986519-43010984:+|nuORF	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2637329101562	2	533.26655	1064.51855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.027	1	27.027	26.527	27.527	0								0	0	0	0.3304	1	8787	8787		29.15	2.1022	1				1230	5315	689	694	1240	1240					-0.011131359998898915
AERLGQFMTLA	11	Unmodified	_AERLGQFMTLA_					0	0	0		ENSG00000113739|ENST00000265087|STC2	ENSG00000113739|ENST00000265087|STC2	ENSG00000113739|ENST00000265087|STC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.8865661621094	3	412.885024	1235.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.317	1	29.317	28.817	29.817	0								0	0	0	0.41817	1	10457	10457		33.039	1.4051	1				1231	2824	690	695	1241	1241					0.024851286914099546
AERMLGNAAPL	11	Unmodified	_AERMLGNAAPL_					0	0	0		ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.5376281738281	3	381.537736	1141.59138	0.82956	0.00031651	-1.315	-0.00050171	-0.4854	-0.0001852	381.5373078956004	25.294	0.19254	25.294	25.195	25.388	0					8	4	3	0	0	0	0.67983	1	8638	8638		29.551	6.9892	1	529730			1232	1250	691	696	1242	1242					0.026245730028676917
AERPGEAAV	9	Unmodified	_AERPGEAAV_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.23236083984375	2	450.232699	898.450845	0.031396	1.4135E-05	-0.60104	-0.00027061	-0.56965	-0.00025647	450.2324106585987	19.904	0.20533	19.904	19.802	20.007	0					16	6	4	0	0	0	0.15163	1	5228	5228		67.494	9.2637	1	1472200			1233	8116	692	697	1243	1243					-0.0024426265905503897
AERPGEAAV	9	Unmodified	_AERPGEAAV_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2326354980469	2	450.232699	898.450845	0.63388	0.00028539	-1.0331	-0.00046513	-0.39921	-0.00017974	450.2322336997273	20.249	0.42479	20.249	20.11	20.535	0					22	9	5	0	0	0	0.25761	1	6239	6239		54.722	5.1863	1	10033000			1234	8116	692	697	1244	1244					-0.0024426265905503897
AERPGEAAV	9	Unmodified	_AERPGEAAV_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2323303222656	2	450.232699	898.450845	-0.1946	-8.7617E-05	-0.38559	-0.00017361	-0.5802	-0.00026122	450.23248091669006	19.972	0.26725	19.972	19.874	20.141	0					16	6	4	0	0	0	0.30841	1	5519	5519		49.536	1.8787	1	2447300			1235	8116	692	697	1245	1245					-0.0024426265905503897
AERPGEAAVA	10	Unmodified	_AERPGEAAVA_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.75140380859375	2	485.751256	969.487959	-1.2387	-0.00060171	0.57364	0.00027865	-0.66509	-0.00032307	485.75148931188517	19.773	0.1432	19.773	19.706	19.849	0					10	5	3	0	0	0	0.64162	1	5401	5401		29.17	4.6509	1	265100			1236	8116	693	698	1246	1246					0.0019940888670362256
AERPHVLAGR	10	Unmodified	_AERPHVLAGR_					0	0	0			REV__ENST00000441290.6_1_7:114296499-114304492:+|nuORF	REV__ENST00000441290.6_1_7:114296499-114304492:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.21319580078125	3	369.212351	1104.61522	0.76721	0.00028326	0.9183	0.00033905	1.6855	0.00062231	369.2127593249767	30.17	0.16843	30.17	30.087	30.256	0					7	4	2	0	0	0	0.67464	1	10866	10866		25.126	0	1	157340	+		1237	19237	694	699	1247	1247					0.06710174551540149
AERPKVNFG	9	Unmodified	_AERPKVNFG_					0	0	0			REV__ENST00000557238.5_1_14:47341050-47530490:-|nuORF	REV__ENST00000557238.5_1_14:47341050-47530490:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.8563537597656	3	339.854053	1016.54033	0.52922	0.00017986	2.1883	0.00074371	2.7175	0.00092357	339.85621983919265	32.667	0.50984	32.667	32.542	33.052	0					16	12	2	0	0	0	0.50461	1	12427	12427		24.519	0	1	207960	+		1238	15053	695	700	1248	1248					0.03271992020336256
AERPQEWAM	9	Unmodified	_AERPQEWAM_					0	0	0		ENST00000555629.1_1_14:35872865-35873850:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF;ENSG00000100906|ENST00000216797|NFKBIA	ENST00000555629.1_1_14:35872865-35873850:-|nuORF	ENST00000555629.1_1_14:35872865-35873850:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.2576293945312	2	559.258391	1116.50223	0.12256	6.8541E-05	-2.0213	-0.0011304	-1.8988	-0.0010619	559.2566229017834	33.792	0.36315	33.792	33.673	34.036	0					22	14	2	0	0	0	0.40353	1	11365	11365		41.427	5.8083	1	173600			1239	2073	696	701	1249	1249					-0.051362619566589274
AERQTRQTK	9	Unmodified	_AERQTRQTK_					0	0	0		ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098693847656	3	373.207266	1116.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.162	1	46.162	45.662	46.662	0								0	0	0	0.3063	1	18478	18478		33.922	2.2874	1				1240	1223	697	702	1250	1250					0.04633262963693596
AERRNIHKL	9	Unmodified	_AERRNIHKL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.5596923828125	3	379.559751	1135.65742	0.81965	0.0003111	-1.0716	-0.00040675	-0.25199	-9.5647E-05	379.55940805523335	15.661	0.20944	15.661	15.615	15.824	0					9	5	3	0	0	0	0.33044	1	4106	4106		47.657	4.7931	1	373260			1241	1193	698	703	1251	1251					0.09502149959939743
AERTHVLVT	9	Unmodified	_AERTHVLVT_					0	0	0			REV__ENSG00000116670|ENST00000376692|MAD2L2	REV__ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2925415039062	2	513.290548	1024.56654	3.1636	0.0016238	0.82968	0.00042587	3.9933	0.0020497	513.2908827359806	48.369	0.17664	48.369	48.308	48.485	0					14	9	2	0	0	0	0.47038	1	19218	19218		35.618	8.9254	1	158640	+		1242	14153	699	704	1252	1252					0.055242611917947215
AERTNGLL	8	Unmodified	_AERTNGLL_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2428283691406	2	437.243067	872.47158	0.71658	0.00031332	-0.63482	-0.00027757	0.081753	3.5746E-05	437.2423990377223	29.4	0.35915	29.4	29.19	29.549	0					21	7	5	0	0	0	0.32815	1	10755	10755		79.451	8.0731	1	703650	+		1243	21045	700	705	1253	1253					0.03024327720618203
AERVEKEKA	9	Unmodified	_AERVEKEKA_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2940673828125	2	530.293288	1058.57202	-0.043417	-2.3023E-05	0.57939	0.00030725	0.53598	0.00028422	530.2938136491304	18.65	0.15346	18.65	18.559	18.713	0					11	5	3	0	0	0	0.16806	1	4910	4910		65.465	3.358	1	394470			1244	314	701	706	1254	1254					0.04507939983614051
AERVIIWAR	9	Unmodified	_AERVIIWAR_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	371.89013671875	3	371.889097	1112.64546	-1.0383	-0.00038615	3.9873	0.0014828	2.9489	0.0010967	371.89061588740026	17.198	0.2044	17.198	17.139	17.343	0					8	6	2	0	0	0	0.48389	1	4286	4286		41.427	12.257	1	105450			1245	7017	702	707	1255	1255					0.09364533216739801
AERVKQENL	9	Unmodified	_AERVKQENL_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.799072265625	2	543.798737	1085.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.628	1	18.628	18.128	19.128	0								0	0	0	0.045272	1	5484	5484		88.177	3.0161	1				1246	5055	703	708	1256	1256					0.043553423578941874
AERVKQENL	9	Unmodified	_AERVKQENL_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7991333007812	2	543.798737	1085.58292	1.9981	0.0010866	-1.2304	-0.00066907	0.76773	0.00041749	543.7981423555394	18.552	0.16748	18.552	18.493	18.661	0					5	3	2	0	0	0	0.070005	1	5727	5727		88.177	7.7223	1	698240			1247	5055	703	708	1257	1257					0.043553423578941874
AERVLAEKL	9	Unmodified	_AERVLAEKL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.5413818359375	3	343.541475	1027.60259	0.52265	0.00017955	-0.56065	-0.00019261	-0.037996	-1.3053E-05	343.54126129516663	26.551	0.21721	26.551	26.443	26.661	0					7	4	2	0	0	0	0.37744	1	9528	9528		43.651	10.9	1	432990			1248	6707	704	709	1258	1258					0.08989718368638933
AESAEVDGLA	10	Unmodified	_AESAEVDGLA_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2278137207031	2	481.227279	960.440005	-0.13364	-6.4313E-05	0.6601	0.00031766	0.52646	0.00025335	481.2278150393595	36.455	0.37267	36.455	36.34	36.713	0					19	10	3	0	0	0	0.28723	1	13738	13738		68.787	4.5796	1	651380	+		1249	13240	705	710	1259	1259					-0.0417970982400675
AESAPAWRL	9	Unmodified	_AESAPAWRL_					0	0	0		ENST00000544336.5_2_6:170892694-170893702:-|nuORF;nc|ENSG00000071994|Q16342-5|PDCD2;nc|ENSG00000071994|Q16342-2|PDCD2;nc|ENSG00000071994|Q16342-4|PDCD2;nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7644958496094	2	500.764166	999.513779	0.66105	0.00033103	-0.30066	-0.00015056	0.36039	0.00018047	500.76386365929164	38.842	0.33919	38.842	38.736	39.075	0					26	12	3	0	0	0	0.42902	1	14824	14824		39.253	2.8061	1	165090			1250	1480	706	711	1260	1260					0.01400303128991709
AESAPAWRL	9	Unmodified	_AESAPAWRL_					0	0	0		ENST00000544336.5_2_6:170892694-170893702:-|nuORF;nc|ENSG00000071994|Q16342-5|PDCD2;nc|ENSG00000071994|Q16342-2|PDCD2;nc|ENSG00000071994|Q16342-4|PDCD2;nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7638244628906	2	500.764166	999.513779	0.91597	0.00045869	-2.5027	-0.0012533	-1.5868	-0.00079459	500.76287454904383	38.806	0.43472	38.806	38.65	39.084	0					24	15	2	0	0	0	0.17854	1	15241	15241		64.207	11.271	1	185120			1251	1480	706	711	1261	1261					0.01400303128991709
AESAPAWRL	9	Unmodified	_AESAPAWRL_					0	0	0		ENST00000544336.5_2_6:170892694-170893702:-|nuORF;nc|ENSG00000071994|Q16342-5|PDCD2;nc|ENSG00000071994|Q16342-2|PDCD2;nc|ENSG00000071994|Q16342-4|PDCD2;nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7641296386719	2	500.764166	999.513779	1.1034	0.00055255	-0.89893	-0.00045015	0.20448	0.0001024	500.7636824164256	38.782	0.40534	38.782	38.627	39.032	0					18	8	3	0	0	0	0.078509	1	15267	15267		85.161	5.4482	1	338520			1252	1480	706	711	1262	1262					0.01400303128991709
AESDKPVVI	9	Unmodified	_AESDKPVVI_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.26654052734375	2	479.266207	956.517862	0.66192	0.00031724	-0.29876	-0.00014319	0.36316	0.00017405	479.26660612447324	28.587	0.65183	28.587	28.126	28.778	0					24	13	2	0	0	0	0.15163	1	10498	10498		67.494	7.3754	1	407480			1253	2732	707	712	1263	1263					0.03786347832055981
AESEKSQKL	9	Unmodified	_AESEKSQKL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2719421386719	2	510.272021	1018.52949	-0.0095249	-4.8603E-06	-1.5831	-0.00080779	-1.5926	-0.00081265	510.2719716409903	14.938	0.12969	14.938	14.851	14.98	0					11	3	4	0	0	0	0.15558	1	3755	3755		66.962	1.4965	1	1123400			1254	4171	708	713	1264	1264					0.020965448553852184
AESEKSQKL	9	Unmodified	_AESEKSQKL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.27178955078125	2	510.272021	1018.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.925	1	14.925	14.425	15.425	0								0	0	0	0.045272	1	3823	3823		88.177	19.39	1				1255	4171	708	713	1265	1265					0.020965448553852184
AESEKWQQAL	10	Unmodified	_AESEKWQQAL_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.296142578125	2	595.296027	1188.5775	0.1862	0.00011084	0.18815	0.000112	0.37435	0.00022285	595.2961445372842	34.535	0.33141	34.535	34.4	34.731	0					16	8	3	0	0	0	0.14151	1	12879	12879		88.177	24.75	1	253920			1256	7434	709	714	1266	1266					-0.009243812245813388
AESEKWQQAL	10	Unmodified	_AESEKWQQAL_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.29638671875	2	595.296027	1188.5775	0.059281	3.529E-05	0.0058797	3.5002E-06	0.065161	3.879E-05	595.2958764346452	34.56	0.20596	34.56	34.48	34.686	0					10	5	2	0	0	0	0.4758	1	13321	13321		47.96	21.267	1	196050			1257	7434	709	714	1267	1267					-0.009243812245813388
AESFNFSSSGR	11	Unmodified	_AESFNFSSSGR_					0	0	0		ENSG00000162927|ENST00000316752|PUS10	ENSG00000162927|ENST00000316752|PUS10	ENSG00000162927|ENST00000316752|PUS10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.7675170898438	2	594.767634	1187.52072	-1.8111	-0.0010772	1.5793	0.00093929	-0.23181	-0.00013787	594.7684405571687	26.948	0.16186	26.948	26.852	27.014	0					8	4	3	0	0	0	0.60833	1	8750	8750		36.318	4.6834	1	85623			1258	5513	710	715	1268	1268					-0.06554428781100796
AESGRGQVM	9	Unmodified	_AESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7241516113281	2	467.724184	933.433814	-1.0482	-0.00049026	0.22736	0.00010634	-0.82083	-0.00038392	467.7243682373537	18.263	0.15855	18.263	18.179	18.337	0					13	6	3	0	0	0	0.21263	1	4719	4719		60.118	17.254	1	443860			1259	1019	711	716	1269	1269					-0.03556506536494908
AESGRGQVM	9	Unmodified	_AESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.72393798828125	2	467.724184	933.433814	0.64348	0.00030097	0.68029	0.00031819	1.3238	0.00061916	467.72460758128403	18.502	0.36768	18.502	18.394	18.761	0					24	7	4	0	0	0	0.087861	1	5678	5678		82.241	13.756	1	3497600			1260	1019	711	716	1270	1270					-0.03556506536494908
AESGRGQVM	9	Unmodified	_AESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7243347167969	2	467.724184	933.433814	-0.72684	-0.00033996	-0.013947	-6.5232E-06	-0.74079	-0.00034649	467.72432518229226	18.335	0.21528	18.335	18.235	18.45	0					12	6	3	0	0	0	0.098791	1	4760	4760		79.713	24.208	1	220550			1261	1019	711	716	1271	1271					-0.03556506536494908
AESGRGQVM	9	Unmodified	_AESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7239685058594	2	467.724184	933.433814	0.59974	0.00028051	-1.4215	-0.00066488	-0.82179	-0.00038437	467.7236854924366	18.478	0.41397	18.478	18.305	18.719	0					22	8	4	0	0	0	0.035062	1	5543	5543		104.06	37.628	1	1797500			1262	1019	711	716	1272	1272					-0.03556506536494908
AESGRGQVM	9	Unmodified	_AESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.72381591796875	2	467.724184	933.433814	2.6387	0.0012342	0.44115	0.00020634	3.0798	0.0014405	467.7246020300131	18.57	0.49294	18.57	18.387	18.88	0					30	10	5	0	0	0	0.12239	1	5559	5559		74.255	22.92	1	2826400			1263	1019	711	716	1273	1273					-0.03556506536494908
AESGVERQV	9	Unmodified	_AESGVERQV_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7488098144531	2	487.748713	973.482873	-1.2457	-0.0006076	0.53227	0.00025961	-0.71345	-0.00034798	487.7491011834159	19.877	0.10957	19.877	19.842	19.951	0					5	3	2	0	0	0	0.076532	1	5468	5468		85.862	5.4072	1	124690			1264	4494	712	717	1274	1274					-0.004928949759005263
AESGVERQVL	10	Unmodified	_AESGVERQVL_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2908325195312	2	544.290745	1086.56694	0.45236	0.00024622	-0.13294	-7.2358E-05	0.31942	0.00017386	544.290596260376	27.935	0.23007	27.935	27.822	28.052	0					19	8	4	0	0	0	0.48965	1	8957	8957		46.457	0.48454	1	375120			1265	4494	713	718	1275	1275					0.027116361209891693
AESGVERQVL	10	Unmodified	_AESGVERQVL_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2911376953125	2	544.290745	1086.56694	-1.494	-0.0008132	2.1453	0.0011676	0.65122	0.00035445	544.2918026231265	27.989	0.25365	27.989	27.892	28.145	0					11	6	3	0	0	0	0.39647	1	9233	9233		56.632	10.175	1	233290			1266	4494	713	718	1276	1276					0.027116361209891693
AESKGVVKF	9	Unmodified	_AESKGVVKF_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7764892578125	2	482.776742	963.538931	0.066412	3.2062E-05	-0.40815	-0.00019705	-0.34174	-0.00016498	482.7765328750238	22.99	0.15168	22.99	22.907	23.058	0					9	5	2	0	0	0	0.098791	1	6581	6581		79.713	10.926	1	118920			1267	1351	714	719	1277	1277					0.05570357931560466
AESKGVVKF	9	Unmodified	_AESKGVVKF_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.77667236328125	2	482.776742	963.538931	-0.12431	-6.0012E-05	-0.74719	-0.00036073	-0.8715	-0.00042074	482.7761368772678	23.349	0.19409	23.349	23.25	23.444	0					7	4	2	0	0	0	0.11898	1	7726	7726		75.043	0.78827	1	657230			1268	1351	714	719	1278	1278					0.05570357931560466
AESKGVVKF	9	Unmodified	_AESKGVVKF_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7766418457031	2	482.776742	963.538931	-1.2967	-0.00062601	0.93887	0.00045326	-0.35781	-0.00017274	482.7772613653301	23.066	0.15533	23.066	22.971	23.126	0					9	5	3	0	0	0	0.048471	1	6876	6876		95.815	21.56	1	111820			1269	1351	714	719	1279	1279					0.05570357931560466
AESKGVVKF	9	Unmodified	_AESKGVVKF_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7766418457031	2	482.776742	963.538931	2.3993	0.0011583	-2.9057	-0.0014028	-0.50639	-0.00024447	482.7755175301437	23.26	0.16821	23.26	23.15	23.318	0					6	3	2	0	0	0	0.15163	1	7874	7874		67.494	3.2864	1	931790			1270	1351	714	719	1280	1280					0.05570357931560466
AESKNGWTL	9	Unmodified	_AESKNGWTL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.25323486328125	2	503.253631	1004.49271	-0.052768	-2.6556E-05	-0.00034395	-1.7309E-07	-0.053112	-2.6729E-05	503.25351656575845	33.856	0.3221	33.856	33.751	34.073	0					21	13	2	0	0	0	0.27249	1	11024	11024		52.937	15.125	1	184270			1271	2606	715	720	1281	1281					-0.009357069705288268
AESKNGWTL	9	Unmodified	_AESKNGWTL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2536926269531	2	503.253631	1004.49271	-0.06448	-3.245E-05	-0.35136	-0.00017682	-0.41584	-0.00020927	503.25354490128024	34.14	0.58633	34.14	34.026	34.612	0					28	15	3	0	0	0	0.035106	1	12680	12680		104.01	32.718	1	932920			1272	2606	715	720	1282	1282					-0.009357069705288268
AESKNGWTL	9	Unmodified	_AESKNGWTL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2529602050781	2	503.253631	1004.49271	-0.87739	-0.00044155	0.6987	0.00035162	-0.17869	-8.9928E-05	503.25398440310005	33.918	0.35855	33.918	33.808	34.167	0					34	14	3	0	0	0	0.38666	1	11395	11395		42.864	0.46813	1	430620			1273	2606	715	720	1283	1283					-0.009357069705288268
AESKNGWTL	9	Unmodified	_AESKNGWTL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.25360107421875	2	503.253631	1004.49271	1.0029	0.0005047	-1.1806	-0.00059416	-0.17776	-8.9459E-05	503.2529771124509	34.138	0.45996	34.138	34.044	34.504	0					33	11	4	0	0	0	0.02953	1	13127	13127		109.48	37.601	1	2221400			1274	2606	715	720	1284	1284					-0.009357069705288268
AESKNGWTL	9	Unmodified	_AESKNGWTL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2526550292969	2	503.253631	1004.49271	0.12868	6.4756E-05	-1.0161	-0.00051138	-0.88747	-0.00044662	503.25315542508173	33.894	0.29984	33.894	33.807	34.107	0					14	8	3	0	0	0	0.27249	1	11956	11956		52.937	2.9122	1	88440			1275	2606	715	720	1285	1285					-0.009357069705288268
AESKNGWTL	9	Unmodified	_AESKNGWTL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.252685546875	2	503.253631	1004.49271	-2.0469	-0.0010301	1.7742	0.00089286	-0.27274	-0.00013726	503.2545505347336	33.886	0.29623	33.886	33.799	34.095	0					19	8	3	0	0	0	0.16806	1	11928	11928		65.465	17.55	1	320810			1276	2606	715	720	1286	1286					-0.009357069705288268
AESKNGWTL	9	Unmodified	_AESKNGWTL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2532653808594	2	503.253631	1004.49271	1.1768	0.00059221	-1.371	-0.00068997	-0.19426	-9.7763E-05	503.2527564576998	34.095	0.4036	34.095	33.989	34.393	0					24	8	4	0	0	0	0.11898	1	13043	13043		75.043	16.813	1	673430			1277	2606	715	720	1287	1287					-0.009357069705288268
AESKVFYL	8	Unmodified	_AESKVFYL_					0	0	0		ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000392459.3_1_6:127676988-127677414:+|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.75762939453125	2	478.758018	955.501483	-0.11576	-5.542E-05	0.0088333	4.229E-06	-0.10692	-5.1191E-05	478.7579475745868	40.642	0.22375	40.642	40.546	40.769	0					19	9	3	0	0	0	0.46013	1	16008	16008		64.207	20.09	1	142990			1278	5741	716	721	1288	1288					0.02195266665944473
AESKVFYL	8	Unmodified	_AESKVFYL_					0	0	0		ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000392459.3_1_6:127676988-127677414:+|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.75762939453125	2	478.758018	955.501483	0.0054371	2.6031E-06	-0.19168	-9.177E-05	-0.18625	-8.9167E-05	478.75802633589177	40.407	0.14424	40.407	40.356	40.5	0					10	8	2	0	0	0	0.61938	1	14359	14359		45.952	10.334	1	46215			1279	5741	716	721	1289	1289					0.02195266665944473
AESKVFYL	8	Unmodified	_AESKVFYL_					0	0	0		ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000392459.3_1_6:127676988-127677414:+|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7578125	2	478.758018	955.501483	-0.65947	-0.00031572	0.4721	0.00022602	-0.18737	-8.9705E-05	478.75816933242436	40.598	0.32153	40.598	40.503	40.825	0					14	6	3	0	0	0	0.27635	1	16122	16122		90.37	34.866	1	400740			1280	5741	716	721	1290	1290					0.02195266665944473
AESLIAKKI	9	Unmodified	_AESLIAKKI_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.87445068359375	3	324.874454	971.601532	0.55761	0.00018115	0.34253	0.00011128	0.90015	0.00029243	324.8742892652951	26.059	0.30857	26.059	26	26.309	0					8	6	2	0	0	0	0.45358	1	9293	9293		44.377	12.743	1	599780			1281	5876	717	722	1291	1291					0.11459503999742537
AESLINAFK	9	Unmodified	_AESLINAFK_					0	0	0			REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.77264404296875	2	496.7742	991.533846	0.76308	0.00037908	-1.7952	-0.00089183	-1.0322	-0.00051275	496.7736673765992	41.04	0.51031	41.04	40.756	41.266	0					33	16	3	0	0	0	0.48389	1	16085	16085		34.173	6.2903	1	547750	+		1282	12053	718	723	1292	1292					0.037740540689469526
AESLKAKAL	9	Unmodified	_AESLKAKAL_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3;nc|ENSG00000167595|Q2NL68|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.78369140625	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.265	1	21.265	20.765	21.765	0								0	0	0	0.10826	1	6731	6731		69.628	5.4204	1				1283	6003	719	724	1293	1293					0.08698644448600135
AESNRRIK	8	Unmodified	_AESNRRIK_					0	0	0			REV__PRMT5|p.E97D|1|0.59|ENSG00000100462|chr14:22928150-22928150|C/G|missense_variant	REV__PRMT5|p.E97D|1|0.59|ENSG00000100462|chr14:22928150-22928150|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7799987792969	2	487.280515	972.546476	0.8111	0.00039523	1.3503	0.00065798	2.1614	0.0010532	487.28123192534116	35.368	0.42394	35.368	35.213	35.637	0					20	8	3	0	0	0	0.5676	1	13761	13761		53.351	3.9099	1	4374900	+		1284	13557	720	725	1294	1294					0.059105102518515196
AESPHPPV	8	Unmodified	_AESPHPPV_					0	0	0		TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant	TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant	TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.2131652832031	2	417.211235	832.407917	0.068912	2.8751E-05	3.8068	0.0015882	3.8757	0.001617	417.2129268317081	16.137	0.11601	16.137	16.08	16.196	0					6	2	3	0	0	0	0.6282	1	4563	4563		44.531	9.3304	1	139410			1285	23066	721	726	1295	1295					-0.014990327164809969
AESPQSLNYR	10	Unmodified	_AESPQSLNYR_					0	0	0			REV__ENSG00000132005|ENST00000254325|RFX1	REV__ENSG00000132005|ENST00000254325|RFX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.7838134765625	2	582.785827	1163.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.582	1	28.582	28.082	29.082	0								0	0	0	0.3805	1	10488	10488		36.447	0	1		+		1286	14641	722	727	1296	1296					-0.018135518844019316
AESRAEKNRL	10	Unmodified	_AESRAEKNRL_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3203735351562	2	587.320368	1172.62618	1.4352	0.00084291	-1.3197	-0.00077508	0.11548	6.7824E-05	587.3195164813047	14.935	0.11638	14.935	14.878	14.994	0					4	2	2	0	0	0	0.46192	1	3995	3995		45.022	0	1	773140			1287	2976	723	728	1297	1297					0.04677532135178808
AESSSKFKP	9	Unmodified	_AESSSKFKP_					0	0	0		ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.756103515625	2	490.756007	979.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.91	1	21.91	21.41	22.41	0								0	0	0	0.27025	1	6111	6111		40.778	5.1599	1				1288	1537	724	729	1298	1298					0.006891771722393969
AESTNILKL	9	Unmodified	_AESTNILKL_					0	0	0		CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant;CASP5|p.N178Ifs*8|5|0.27|ENSG00000137757|chr11:105003284-105003284|T/-|frameshift_variant;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant	CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.78729248046875	2	494.787307	987.560061	-0.42759	-0.00021156	0.045351	2.2439E-05	-0.38224	-0.00018913	494.7872562366938	39.031	0.33598	39.031	38.916	39.252	0					27	12	4	0	0	0	0.098791	1	14837	14837		79.713	2.395	1	642690			1289	378	725	730	1299	1299					0.06578323240421469
AESTNILKL	9	Unmodified	_AESTNILKL_					0	0	0		CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant;CASP5|p.N178Ifs*8|5|0.27|ENSG00000137757|chr11:105003284-105003284|T/-|frameshift_variant;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant	CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7871398925781	2	494.787307	987.560061	-0.75572	-0.00037392	0.63327	0.00031333	-0.12245	-6.0586E-05	494.7875058583022	38.979	0.24832	38.979	38.907	39.156	0					13	8	2	0	0	0	0.032052	1	15332	15332		107.01	5.4068	1	265310			1290	378	725	730	1300	1300					0.06578323240421469
AESVSQQIL	9	Unmodified	_AESVSQQIL_					0	0	0		ENST00000488602.1_1_22:39925499-39925935:-|nuORF;ENSG00000187051|ENST00000334678|RPS19BP1	ENST00000488602.1_1_22:39925499-39925935:-|nuORF	ENST00000488602.1_1_22:39925499-39925935:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7612609863281	2	487.761289	973.508025	-0.36308	-0.0001771	0.33878	0.00016524	-0.024302	-1.1854E-05	487.76128427034155	39.026	0.17059	39.026	38.941	39.111	0					13	6	3	0	0	0	0.36892	1	14843	14843		44.377	1.5129	1	79117			1291	7177	726	731	1301	1301					0.020211598266882902
AESVVPARM	9	Unmodified	_AESVVPARM_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2529296875	2	480.252577	958.490601	0.031373	1.5067E-05	-0.70728	-0.00033967	-0.6759	-0.0003246	480.25235935480185	28.625	0.15805	28.625	28.536	28.694	0					10	7	2	0	0	0	0.14603	1	8954	8954		68.787	12.066	1	71866			1292	5994	727	732	1302	1302					0.009695410200151855
AESVVPARM	9	Unmodified	_AESVVPARM_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2520446777344	2	480.252577	958.490601	0.49644	0.00023842	-1.2273	-0.00058941	-0.73085	-0.00035099	480.2519717306053	28.906	0.20992	28.906	28.769	28.979	0					9	5	2	0	0	0	0.12239	1	10249	10249		74.255	5.4682	1	493130			1293	5994	727	732	1303	1303					0.009695410200151855
AESVVPARM	9	Unmodified	_AESVVPARM_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2529602050781	2	480.252577	958.490601	-1.3893	-0.00066722	1.741	0.00083614	0.35172	0.00016891	480.2536732332092	28.658	0.2901	28.658	28.43	28.72	0					17	11	2	0	0	0	0.063823	1	9251	9251		90.37	15.853	1	99959			1294	5994	727	732	1304	1304					0.009695410200151855
AESVVPARM	9	Unmodified	_AESVVPARM_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2522888183594	2	480.252577	958.490601	0.67248	0.00032296	-0.73334	-0.00035219	-0.060856	-2.9226E-05	480.252235158535	28.871	0.2641	28.871	28.712	28.976	0					8	5	2	0	0	0	0.087861	1	10639	10639		82.241	5.4664	1	674160			1295	5994	727	732	1305	1305					0.009695410200151855
AESVVPARM	9	Unmodified	_AESVVPARM_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2528381347656	2	480.252577	958.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.712	1	28.712	28.212	29.212	0								0	0	0	0.15451	1	9566	9566		58.782	5.4305	1				1296	5994	727	732	1306	1306					0.009695410200151855
AESVVPARM	9	Unmodified	_AESVVPARM_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2525329589844	2	480.252577	958.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.882	1	28.882	28.382	29.382	0								0	0	0	0.091069	1	10516	10516		74.255	7.8258	1				1297	5994	727	732	1307	1307					0.009695410200151855
AETAGMIGVQ	10	Unmodified	_AETAGMIGVQ_					0	0	0		CABP5|p.R145Gfs*24|1|0.27|ENSG00000105507|chr19:48034278-48034278|G/-|frameshift_variant;ENSG00000105507|ENST00000293255|CABP5	CABP5|p.R145Gfs*24|1|0.27|ENSG00000105507|chr19:48034278-48034278|G/-|frameshift_variant	CABP5|p.R145Gfs*24|1|0.27|ENSG00000105507|chr19:48034278-48034278|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.74078369140625	2	488.742042	975.469531	-2.896	-0.0014154	-0.60982	-0.00029804	-3.5058	-0.0017134	488.74173640519297	28.397	0.24656	28.397	28.313	28.56	0					13	6	3	0	0	0	0.49411	1	9409	9409		45.972	3.5761	1	291140			1298	344	728	733	1308	1308					-0.019184690794986636
AETARLTSF	9	Unmodified	_AETARLTSF_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF;ENST00000549933.5_1_12:69979244-69980637:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2611389160156	2	498.261456	994.50836	0.82115	0.00040915	-0.64145	-0.00031961	0.1797	8.9539E-05	498.2611087327197	32.951	0.19065	32.951	32.875	33.065	0					8	4	3	0	0	0	0.054723	1	12568	12568		93.598	5.9011	1	426040			1299	5876	729	734	1309	1309					0.010885795465242154
AETATDLVV	9	Unmodified	_AETATDLVV_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1;DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;ENST00000529206.1_1_14:95595738-95599795:-|nuORF	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.742431640625	2	459.742565	917.470577	0.81299	0.00037377	-1.2009	-0.0005521	-0.38791	-0.00017834	459.7417452043499	33.185	0.26702	33.185	33.084	33.351	0					12	7	2	0	0	0	0.11118	1	12245	12245		76.847	2.8719	1	217620			1300	2057	730	735	1310	1310					0.008540685610569199
AETDVLAYD	9	Unmodified	_AETDVLAYD_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.72900390625	2	498.729655	995.444756	-0.053081	-2.6473E-05	-1.4959	-0.00074604	-1.549	-0.00077252	498.7287619831097	13.209	0.064781	13.209	13.165	13.23	0					5	3	2	0	0	0	0.61124	1	2582	2582		11.511	0	1	39789			1301	964	731	736	1311	1311					-0.05314825681250568
AETEEIPKI	9	Unmodified	_AETEEIPKI_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.85394287109375	3	343.853607	1028.53899	1.5311	0.00052648	-0.63761	-0.00021924	0.89351	0.00030724	343.853408804696	20.386	0.26771	20.386	20.277	20.544	0					12	5	4	0	0	0	0.19605	1	6475	6475		62.107	20.681	1	1488300			1302	1417	732	737	1312	1312					0.02586313140909624
AETEGPGEGI	10	Unmodified	_AETEGPGEGI_					0	0	0			REV__ENSG00000047578|ENST00000261588|KATNIP	REV__ENSG00000047578|ENST00000261588|KATNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2193603515625	2	480.219454	958.424355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.765	1	24.765	24.265	25.265	0								0	0	0	0.32041	1	7358	7358		47.657	5.1829	1		+		1303	13011	733	738	1313	1313					-0.056519963410323726
AETELINRV	9	Unmodified	_AETELINRV_					0	0	0		nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF;nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-3|VAV3	nc|ENSG00000134215|Q9UKW4-3|VAV3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7884521484375	2	522.787838	1043.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.68	1	32.68	32.18	33.18	0								0	0	0	0.10826	1	10576	10576		69.628	11.398	1				1304	3897	734	739	1314	1314					0.04108537609317864
AETELINRV	9	Unmodified	_AETELINRV_					0	0	0		nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF;nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-3|VAV3	nc|ENSG00000134215|Q9UKW4-3|VAV3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.788330078125	2	522.787838	1043.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.742	1	32.742	32.242	33.242	0								0	0	0	0.080575	1	10944	10944		77.318	9.8239	1				1305	3897	734	739	1315	1315					0.04108537609317864
AETELINRV	9	Unmodified	_AETELINRV_					0	0	0		nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF;nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-3|VAV3	nc|ENSG00000134215|Q9UKW4-3|VAV3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7876586914062	2	522.787838	1043.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.927	1	32.927	32.427	33.427	0								0	0	0	0.03526	1	12556	12556		93.143	4.9663	1				1306	3897	734	739	1316	1316					0.04108537609317864
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.26751708984375	2	509.267893	1016.52123	-0.10669	-5.4335E-05	-0.12313	-6.2706E-05	-0.22982	-0.00011704	509.2678446726314	31.782	0.23909	31.782	31.682	31.921	0					21	10	3	0	0	0	0.063823	1	10217	10217		90.37	26.163	1	208460			1307	2284	735	740	1317	1317					0.013632746144025987
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2679443359375	2	509.267893	1016.52123	-0.017798	-9.0638E-06	-0.12595	-6.4142E-05	-0.14375	-7.3206E-05	509.2679211578317	32.057	0.33647	32.057	31.966	32.303	0					22	8	4	0	0	0	0.0406	1	11720	11720		98.629	32.2	1	1436400			1308	2284	735	740	1318	1318					0.013632746144025987
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.26617431640625	2	509.267893	1016.52123	-0.5104	-0.00025993	0.67936	0.00034598	0.16896	8.6046E-05	509.26811671691223	31.812	0.33897	31.812	31.684	32.023	0					28	13	3	0	0	0	0.36892	1	10563	10563		44.377	0.26039	1	224880			1309	2284	735	740	1319	1319					0.013632746144025987
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2677001953125	2	509.267893	1016.52123	1.1692	0.00059545	-1.5201	-0.00077413	-0.35085	-0.00017868	509.2671536257791	32.041	0.58716	32.041	31.702	32.289	0					34	12	4	0	0	0	0.028876	1	12128	12128		110.12	43.691	1	1538200			1310	2284	735	740	1320	1320					0.013632746144025987
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2676086425781	2	509.267893	1016.52123	-0.40362	-0.00020555	0.93989	0.00047866	0.53627	0.0002731	509.2683238842876	32.024	0.15231	32.024	31.928	32.081	0					5	3	2	0	0	0	0.33044	1	12123	12123		47.657	13.485	1	155690			1311	2284	735	740	1321	1321					0.013632746144025987
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.268310546875	2	509.267893	1016.52123	-1.8564	-0.00094542	1.5043	0.00076609	-0.35212	-0.00017932	509.268671788866	31.828	0.29676	31.828	31.694	31.99	0					22	9	3	0	0	0	0.063823	1	10985	10985		90.37	23.941	1	246420			1312	2284	735	740	1322	1322					0.013632746144025987
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2681579589844	2	509.267893	1016.52123	3.012	0.0015339	-4.0179	-0.0020462	-1.0058	-0.00051223	509.266304967747	31.993	0.722	31.993	31.835	32.557	0					50	14	5	0	0	0	0.028876	1	12028	12028		110.12	25.204	1	1976800			1313	2284	735	740	1323	1323					0.013632746144025987
AETERREDAL	10	Unmodified	_AETERREDAL_					0	0	0			REV__ENST00000484453.1_1_2:74668972-74669041:-|nuORF	REV__ENST00000484453.1_1_2:74668972-74669041:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	595.7973022460938	2	595.294016	1188.57348	0.1321	7.8636E-05	3.0438	0.001812	3.1759	0.0018906	595.7972041120312	34.272	0.11077	34.272	34.233	34.344	0					7	5	2	0	0	0	0.59255	1	11202	11202		23.523	0	1	56505	+		1314	19635	736	741	1324	1324					-0.013264707182770508
AETFVIFAL	9	Unmodified	_AETFVIFAL_					0	0	0			REV__ENSG00000174358|ENST00000304460|SLC6A19	REV__ENSG00000174358|ENST00000304460|SLC6A19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7797546386719	2	505.781493	1009.54843	-0.74581	-0.00037722	-3.0905	-0.0015631	-3.8363	-0.0019403	505.7799157056036	35.241	0.10253	35.241	35.19	35.293	0					7	4	2	0	0	0	0.43426	1	11921	11921		38.806	4.6336	1	70349	+		1315	16564	737	742	1325	1325					0.04404126217104931
AETGSGKTL	9	Unmodified	_AETGSGKTL_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant;ENSG00000182810|ENST00000332395|DDX28	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2273254394531	2	432.227082	862.439611	-0.7953	-0.00034375	1.5698	0.00067849	0.77446	0.00033474	432.2276107682788	16.969	0.13949	16.969	16.921	17.061	0					7	5	2	0	0	0	0.16806	1	4167	4167		65.465	10.689	1	93354			1316	1821	738	743	1326	1326					0.0028891524681284864
AETGSGKTL	9	Unmodified	_AETGSGKTL_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant;ENSG00000182810|ENST00000332395|DDX28	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.2269287109375	2	432.227082	862.439611	0.98029	0.00042371	-1.4495	-0.00062653	-0.46924	-0.00020282	432.2265369819655	17.208	0.17002	17.208	17.098	17.268	0					7	3	3	0	0	0	0.37744	1	5085	5085		43.651	2.8726	1	797680			1317	1821	738	743	1327	1327					0.0028891524681284864
AETGSGKTL	9	Unmodified	_AETGSGKTL_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant;ENSG00000182810|ENST00000332395|DDX28	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.22686767578125	2	432.227082	862.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.212	1	17.212	16.712	17.712	0								0	0	0	0.16453	1	4923	4923		56.434	9.6674	1				1318	1821	738	743	1328	1328					0.0028891524681284864
AETILKNNI	9	Unmodified	_AETILKNNI_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2932434082031	2	508.292756	1014.57096	-0.025308	-1.2864E-05	-0.39207	-0.00019929	-0.41738	-0.00021215	508.29267589669263	31.772	0.29237	31.772	31.685	31.977	0					16	7	3	0	0	0	0.032052	1	11590	11590		107.01	21.847	1	1095700			1319	3356	739	744	1329	1329					0.06425725614712974
AETILKNNI	9	Unmodified	_AETILKNNI_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.29290771484375	2	508.292756	1014.57096	-0.38971	-0.00019809	0.4131	0.00020998	0.023386	1.1887E-05	508.29295057847867	31.788	0.25637	31.788	31.638	31.894	0					11	5	3	0	0	0	0.012231	1	12010	12010		136.27	45.667	1	296530			1320	3356	739	744	1330	1330					0.06425725614712974
AETILKNNI	9	Unmodified	_AETILKNNI_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2931213378906	2	508.292756	1014.57096	-1.8939	-0.00096263	1.9395	0.00098584	0.04567	2.3214E-05	508.2938752928897	31.552	0.16911	31.552	31.463	31.632	0					7	4	2	0	0	0	0.098791	1	10868	10868		79.713	4.6693	1	292730			1321	3356	739	744	1331	1331					0.06425725614712974
AETILKNNI	9	Unmodified	_AETILKNNI_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2927551269531	2	508.292756	1014.57096	2.9702	0.0015097	-3.656	-0.0018583	-0.68577	-0.00034857	508.290979847221	31.743	0.31564	31.743	31.586	31.902	0					16	6	4	0	0	0	0.095583	1	11911	11911		80.455	0	1	1283900			1322	3356	739	744	1332	1332					0.06425725614712974
AETKGVAL	8	Unmodified	_AETKGVAL_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.2304992675781	2	394.729261	787.443968	0.57852	0.00022836	-0.28772	-0.00011357	0.2908	0.00011479	394.7291112224439	23.693	0.13882	23.693	23.622	23.761	0					8	4	2	0	0	0	0.5535	1	6889	6889		54.776	3.4409	1	166460			1323	3478	740	745	1333	1333					0.04174424460370574
AETKGVAL	8	Unmodified	_AETKGVAL_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.7291259765625	2	394.729261	787.443968	0.89912	0.00035491	-0.95224	-0.00037588	-0.053115	-2.0966E-05	394.7288399965131	24.055	0.31805	24.055	23.918	24.236	0					14	7	3	0	0	0	0.25873	1	8041	8041		96.19	5.4138	1	1268100			1324	3478	740	745	1334	1334					0.04174424460370574
AETLGALASVV	11	Unmodified	_AETLGALASVV_					0	0	0		ENST00000497341.5_1_2:27480525-27481182:-|nuORF	ENST00000497341.5_1_2:27480525-27481182:-|nuORF	ENST00000497341.5_1_2:27480525-27481182:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.792724609375	2	515.792589	1029.57063	-0.50697	-0.00026149	0.70512	0.00036369	0.19815	0.0001022	515.7930493014426	28.922	0.26176	28.922	28.745	29.007	0					8	5	2	0	0	0	0.33926	1	10652	10652		58.23	3.5076	1	111980			1325	10126	741	746	1335	1335					0.05702305894828896
AETLNNILA	9	Unmodified	_AETLNNILA_					0	0	0		nc|ENSG00000145949|Q86YV6-2|MYLK4;MYLK4|p.E336Dfs*7|1|0.06|ENSG00000145949|chr6:2678252-2678252|C/-|frameshift_variant;ENSG00000145949|ENST00000274643|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7872314453125	2	479.763832	957.513111	-1.4036	-0.00067341	0.78835	0.00037822	-0.61527	-0.00029518	479.76418925391096	19.317	0.24139	19.317	19.215	19.456	0					19	7	4	0	0	0	0.25109	1	5265	5265		55.504	4.3115	1	1385600			1326	11571	742	747	1336	1336					0.03265463689297121
AETLRLHR	8	Unmodified	_AETLRLHR_					0	0	0			REV__ENSG00000168286|ENST00000303596|THAP11	REV__ENSG00000168286|ENST00000303596|THAP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2928771972656	2	498.290882	994.567212	3.3845	0.0016864	-0.73884	-0.00036816	2.6456	0.0013183	498.29045089680955	39.162	0.41332	39.162	39.052	39.465	0					59	23	4	0	0	0	0.72381	1	13157	13157		30.504	30.504	1	2728700	+		1327	16249	743	748	1337	1337					0.06971100631517402
AETNKANSY	9	Unmodified	_AETNKANSY_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2327880859375	2	499.232896	996.451239	0.6776	0.00033828	-0.62497	-0.000312	0.052636	2.6278E-05	499.232598434655	27.969	0.25591	27.969	27.879	28.135	0					11	6	2	0	0	0	0.19605	1	9844	9844		62.107	14.88	1	292310	+		1328	17426	744	749	1338	1338					-0.04712887729863269
AETNLRHTC	9	Unmodified	_AETNLRHTC_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7478637695312	2	522.74819	1043.48183	0.085739	4.482E-05	-2.1521	-0.001125	-2.0664	-0.0010802	522.747359384324	17.299	0.17695	17.299	17.213	17.39	0					7	4	2	0	0	0	0.36892	1	4865	4865		44.377	1.9027	1	400120			1329	4023	745	750	1339	1339					-0.03817432616460792
AETRAGLTL	9	Unmodified	_AETRAGLTL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.26336669921875	2	466.263999	930.513445	-0.66825	-0.00031158	0.37306	0.00017394	-0.29519	-0.00013764	466.26402727103874	30.87	0.30964	30.87	30.771	31.08	0					17	7	4	0	0	0	0.095583	1	11165	11165		80.455	16.247	1	463520			1330	2223	746	751	1340	1340					0.04540883409140406
AETRAGLTL	9	Unmodified	_AETRAGLTL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2637939453125	2	466.263999	930.513445	-0.91604	-0.00042712	0.51905	0.00024201	-0.39699	-0.0001851	466.2642687805169	30.59	0.40005	30.59	30.501	30.901	0					21	14	3	0	0	0	0.095583	1	10057	10057		80.455	7.5754	1	264030			1331	2223	746	751	1341	1341					0.04540883409140406
AETRAGLTL	9	Unmodified	_AETRAGLTL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2637634277344	2	466.263999	930.513445	0.66435	0.00030976	-1.2211	-0.00056937	-0.55678	-0.0002596	466.2633830006303	30.823	0.54261	30.823	30.725	31.267	0					33	12	3	0	0	0	0.023928	1	11568	11568		115.49	19.304	1	1458300			1332	2223	746	751	1342	1342					0.04540883409140406
AETRAGLTL	9	Unmodified	_AETRAGLTL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2637939453125	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.609	1	30.609	30.109	31.109	0								0	0	0	0.10319	1	10445	10445		70.816	14.095	1				1333	2223	746	751	1343	1343					0.04540883409140406
AETRQPVVI	9	Unmodified	_AETRQPVVI_					0	0	0		ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.19769287109375	3	338.197708	1011.57129	-0.7027	-0.00023765	0.44539	0.00015063	-0.25731	-8.7023E-05	338.1978160947901	21.268	0.34254	21.268	21.143	21.486	0					19	10	3	0	0	0	0.54267	1	6088	6088		42.864	5.0528	1	180630			1334	3461	747	752	1344	1344					0.06597145334569632
AETRQPVVI	9	Unmodified	_AETRQPVVI_					0	0	0		ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7927551269531	2	506.792924	1011.57129	-0.20486	-0.00010382	0.034598	1.7534E-05	-0.17027	-8.629E-05	506.7928945003029	21.446	0.4675	21.446	21.288	21.755	0					23	9	4	0	0	0	0.028876	1	6974	6974		110.12	6.0631	1	1851600			1335	3461	747	752	1345	1345					0.06597145334569632
AETVLNQM	8	Unmodified	_AETVLNQM_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.22320556640625	2	453.223485	904.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.46	1	38.46	37.96	38.96	0								0	0	0	1.7419	1	14617	14617		42.396	8.2236	1				1336	7818	748	753	1346	1346					-0.02362140625268694
AETVLNQM	8	Unmodified	_AETVLNQM_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2229309082031	2	453.223485	904.432418	0.72079	0.00032668	-1.0279	-0.00046585	-0.30707	-0.00013917	453.2231664045249	38.39	0.20563	38.39	38.305	38.51	0					9	7	2	0	0	0	0.35045	1	15067	15067		76.774	10.971	1	102710			1337	7818	748	753	1347	1347					-0.02362140625268694
AEVAPVKDM	9	Unmodified	_AEVAPVKDM_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.24700927734375	2	480.24696	958.479368	0.047137	2.2637E-05	-1.1416	-0.00054827	-1.0945	-0.00052563	480.24665606979937	27.03	0.097488	27.03	26.969	27.067	0					5	3	2	0	0	0	0.22837	1	8286	8286		58.23	15.834	1	42242			1338	1224	749	754	1348	1348					-0.0015328107413097314
AEVDEVRLGF	10	Unmodified	_AEVDEVRLGF_					0	0	0			REV__ENSG00000100994|ENST00000216962|PYGB	REV__ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.8648376464844	3	378.864506	1133.57169	0.81576	0.00030906	0.22884	8.67E-05	1.0446	0.00039576	378.86459174485674	20.66	2.2532	20.66	20.564	22.817	0					70	52	2	0	0	0	0.63073	1	6456	6456		35.152	1.2304	1	3037900	+		1339	13581	750	755	1349	1349					0.010245202637634065
AEVDKVARL	9	Unmodified	_AEVDKVARL_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.79290771484375	2	500.792924	999.571294	0.66303	0.00033204	-0.65144	-0.00032624	0.011592	5.8051E-06	500.79266254736046	25.877	0.42907	25.877	25.624	26.053	0					21	8	4	0	0	0	0.048471	1	8889	8889		95.815	23.938	1	822490			1340	1068	751	756	1350	1350					0.07149145334562945
AEVDKVARL	9	Unmodified	_AEVDKVARL_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.79290771484375	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.656	1	25.656	25.156	26.156	0								0	0	0	0.0537	1	8007	8007		85.161	20.954	1				1341	1068	751	756	1351	1351					0.07149145334562945
AEVDKVARL	9	Unmodified	_AEVDKVARL_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7927551269531	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.736	1	25.736	25.236	26.236	0								0	0	0	0.19847	1	8226	8226		51.193	1.1682	1				1342	1068	751	756	1352	1352					0.07149145334562945
AEVDLPKL	8	Unmodified	_AEVDLPKL_					0	0	0		ENST00000595633.5_1_19:49949641-49950433:-|nuORF;PIH1D1|p.Q250Sfs*6|1|0.25|ENSG00000104872|chr19:49446634-49446634|G/-|frameshift_variant;ENSG00000104872|ENST00000262265|PIH1D1;ENST00000601053.5_2_19:49950039-49952749:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7570495605469	2	442.758018	883.501483	0.50554	0.00022383	-1.293	-0.0005725	-0.78748	-0.00034866	442.75749362871164	41.167	0.48089	41.167	40.804	41.285	0					23	15	2	0	0	0	0.5535	1	16133	16133		54.776	3.4409	1	94440			1343	11000	752	757	1353	1353					0.055072666659384595
AEVDLPKL	8	Unmodified	_AEVDLPKL_					0	0	0		ENST00000595633.5_1_19:49949641-49950433:-|nuORF;PIH1D1|p.Q250Sfs*6|1|0.25|ENSG00000104872|chr19:49446634-49446634|G/-|frameshift_variant;ENSG00000104872|ENST00000262265|PIH1D1;ENST00000601053.5_2_19:49950039-49952749:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7574157714844	2	442.758018	883.501483	0.75152	0.00033274	-1.5889	-0.00070351	-0.83741	-0.00037077	442.75726829251636	41.065	0.5842	41.065	40.656	41.24	0					16	11	2	0	0	0	0.46013	1	16280	16280		64.207	0.901	1	119940			1344	11000	752	757	1354	1354					0.055072666659384595
AEVEAQKAQQL	11	Unmodified	_AEVEAQKAQQL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	607.82177734375	2	607.822409	1213.63027	0.15434	9.3813E-05	-0.52379	-0.00031837	-0.36945	-0.00022456	607.822056158137	24.272	0.15967	24.272	24.207	24.367	0					8	5	2	0	0	0	0.15663	1	7147	7147		79.489	24.767	1	90328			1345	1776	753	758	1355	1355					0.031995768382330425
AEVEAQKAQQL	11	Unmodified	_AEVEAQKAQQL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.8225708007812	2	607.822409	1213.63027	-0.60018	-0.00036481	0.58826	0.00035756	-0.011928	-7.25E-06	607.8229077771691	24.528	0.2192	24.528	24.437	24.656	0					12	5	4	0	0	0	0.029346	1	8279	8279		115.23	35.743	1	490820			1346	1776	753	758	1356	1356					0.031995768382330425
AEVEAQKAQQL	11	Unmodified	_AEVEAQKAQQL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	607.8226318359375	2	607.822409	1213.63027	-0.61396	-0.00037318	0.18485	0.00011236	-0.4291	-0.00026082	607.8229266206322	24.306	0.071335	24.306	24.249	24.32	0					6	2	3	0	0	0	0.040365	1	7419	7419		109.83	33.056	1	104140			1347	1776	753	758	1357	1357					0.031995768382330425
AEVEAQKAQQL	11	Unmodified	_AEVEAQKAQQL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	607.8220825195312	2	607.822409	1213.63027	-1.9437	-0.0011814	1.1024	0.00067008	-0.84126	-0.00051134	607.8234795659512	24.337	0.13545	24.337	24.251	24.386	0					8	3	3	0	0	0	0.39337	1	7584	7584		52.167	10.741	1	154330			1348	1776	753	758	1358	1358					0.031995768382330425
AEVEKLKKA	9	Unmodified	_AEVEKLKKA_					0	0	0			REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2	REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3108825683594	2	508.310949	1014.60735	1.14	0.00057949	-1.1294	-0.0005741	0.010613	5.3945E-06	508.3105970160372	23.353	0.16585	23.353	23.246	23.412	0					8	3	3	0	0	0	0.10821	1	8046	8046		80.455	6.2896	1	448580	+		1349	13529	754	759	1359	1359					0.10062602511425212
AEVELASRV	9	Unmodified	_AEVELASRV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2676086425781	2	487.269281	972.52401	0.71772	0.00034972	-2.4612	-0.0011993	-1.7435	-0.00084956	487.26766268554906	30.957	0.26491	30.957	30.916	31.181	0					11	6	2	0	0	0	0.19952	1	11231	11231		61.691	10.499	1	191760			1350	6707	755	760	1360	1360					0.03664866063559202
AEVELASRV	9	Unmodified	_AEVELASRV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.26898193359375	2	487.269281	972.52401	0.63329	0.00030858	-3.1618	-0.0015407	-2.5286	-0.0012321	487.2677433025799	30.941	0.32671	30.941	30.815	31.141	0					11	7	2	0	0	0	0.076532	1	11631	11631		85.862	9.6921	1	260120			1351	6707	755	760	1361	1361					0.03664866063559202
AEVFIVKM	8	Unmodified	_AEVFIVKM_					0	0	0		ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.76458740234375	2	468.764789	935.515025	-0.63816	-0.00029915	-0.33081	-0.00015507	-0.96897	-0.00045422	468.76465885367344	43.498	0.16012	43.498	43.418	43.578	0					15	9	2	0	0	0	0.49216	1	16403	16403		60.972	23.943	1	77157			1352	3133	756	761	1362	1362					0.0446880117353885
AEVFIVKM	8	Unmodified	_AEVFIVKM_					0	0	0		ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.76470947265625	2	468.764789	935.515025	0.63051	0.00029556	-0.61939	-0.00029035	0.011114	5.2098E-06	468.76448441953187	43.458	0.16004	43.458	43.397	43.557	0					13	8	2	0	0	0	0.54629	1	16991	16991		55.504	3.205	1	85983			1353	3133	756	761	1363	1363					0.0446880117353885
AEVGAAETTL	10	Unmodified	_AEVGAAETTL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2453308105469	2	481.245472	960.476391	-1.353	-0.00065113	0.18546	8.9251E-05	-1.1676	-0.00056188	481.2457515226291	34.185	0.1139	34.185	34.092	34.206	0					9	5	2	0	0	0	0.36476	1	11520	11520		60.118	5.3419	1	49982			1354	2650	757	762	1364	1364					-0.0054283292729451205
AEVGAAETTL	10	Unmodified	_AEVGAAETTL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2453308105469	2	481.245472	960.476391	0.68372	0.00032904	-1.2563	-0.00060457	-0.57253	-0.00027553	481.2449204348141	34.329	0.24644	34.329	34.258	34.504	0					11	6	2	0	0	0	0.31613	1	13238	13238		65.465	21.839	1	189680			1355	2650	757	762	1365	1365					-0.0054283292729451205
AEVGAAETTL	10	Unmodified	_AEVGAAETTL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2453308105469	2	481.245472	960.476391	-2.923	-0.0014067	1.9554	0.00094104	-0.96756	-0.00046564	481.2465044474644	34.148	0.17245	34.148	34.055	34.227	0					8	5	2	0	0	0	0.2978	1	12056	12056		67.494	17.958	1	59199			1356	2650	757	762	1366	1366					-0.0054283292729451205
AEVGRVLL	8	Unmodified	_AEVGRVLL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.765869140625	2	428.766178	855.517802	0.94469	0.00040505	-2.1731	-0.00093173	-1.2284	-0.00052669	428.76517023842683	35.643	0.26384	35.643	35.532	35.796	0					9	7	2	0	0	0	0.30437	1	13838	13838		82.305	2.854	1	134080			1357	3724;154	758	763	1367	1367					0.084263926227095
AEVHANRL	8	Unmodified	_AEVHANRL_					0	0	0		nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2490539550781	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.598	1	18.598	18.098	19.098	0								0	0	0	1.7419	1	5471	5471		31.955	0	1				1358	4792	759	764	1368	1368					0.024911498147389466
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;ENSG00000118898|ENST00000345988|PPL	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.8132019042969	2	507.813325	1013.6121	0.88152	0.00044765	-0.93047	-0.00047251	-0.048955	-2.486E-05	507.8127142331141	24.861	0.10359	24.861	24.828	24.931	0					5	3	2	0	0	0	0.1424	1	7413	7413		69.628	5.4204	1	58252			1359	3086	760	765	1369	1369					0.10583486654184071
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;ENSG00000118898|ENST00000345988|PPL	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.81329345703125	2	507.813325	1013.6121	0.88741	0.00045064	-0.95192	-0.0004834	-0.064504	-3.2756E-05	507.81280074707354	25.201	0.15553	25.201	25.102	25.258	0					8	3	3	0	0	0	0.082776	1	8572	8572		83.647	8.6037	1	459830			1360	3086	760	765	1370	1370					0.10583486654184071
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;ENSG00000118898|ENST00000345988|PPL	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.81317138671875	2	507.813325	1013.6121	0.17481	8.8772E-05	-0.33666	-0.00017096	-0.16185	-8.219E-05	507.81293414302905	25.16	0.16619	25.16	25.056	25.222	0					7	3	3	0	0	0	0.063171	1	8886	8886		90.601	10.888	1	227210			1361	3086	760	765	1371	1371					0.10583486654184071
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;ENSG00000118898|ENST00000345988|PPL	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8133544921875	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25	1	25	24.5	25.5	0								0	0	0	0.080575	1	7883	7883		77.318	15.21	1				1362	3086	760	765	1372	1372					0.10583486654184071
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;ENSG00000118898|ENST00000345988|PPL	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.8134765625	2	507.813325	1013.6121	-0.1353	-6.8706E-05	0.023629	1.1999E-05	-0.11167	-5.6706E-05	507.81319570036425	25.119	0.21807	25.119	25.012	25.23	0					9	4	3	0	0	0	0.10506	1	8744	8744		78.264	21.83	1	427950			1363	3086	760	765	1373	1373					0.10583486654184071
AEVKERVTL	9	Unmodified	_AEVKERVTL_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8065795898438	2	522.806031	1043.59751	1.5241	0.00079683	-0.79059	-0.00041333	0.73355	0.0003835	522.8057077050886	24.477	0.11709	24.477	24.435	24.552	0					5	3	2	0	0	0	0.21263	1	7240	7240		60.118	10.677	1	120420			1364	897	761	766	1374	1374					0.07745414506052839
AEVKERVTL	9	Unmodified	_AEVKERVTL_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8065795898438	2	522.806031	1043.59751	1.6637	0.00086978	-1.0128	-0.0005295	0.65088	0.00034028	522.8055870025652	24.791	0.25445	24.791	24.698	24.952	0					15	6	3	0	0	0	0.11411	1	8400	8400		76.17	19.537	1	1120400			1365	897	761	766	1375	1375					0.07745414506052839
AEVKERVTL	9	Unmodified	_AEVKERVTL_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8063354492188	2	522.806031	1043.59751	1.797	0.0009395	-0.97454	-0.00050949	0.82249	0.00043	522.8054181393857	24.755	0.26238	24.755	24.645	24.907	0					14	5	3	0	0	0	0.15558	1	8713	8713		66.962	28.156	1	1396900			1366	897	761	766	1376	1376					0.07745414506052839
AEVKERVTL	9	Unmodified	_AEVKERVTL_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8060302734375	2	522.806031	1043.59751	1.0886	0.00056914	-0.49179	-0.00025711	0.59683	0.00031203	522.8056979438663	24.554	0.2346	24.554	24.506	24.741	0					6	5	2	0	0	0	0.10506	1	7685	7685		78.264	23.487	1	210630			1367	897	761	766	1377	1377					0.07745414506052839
AEVKERVTL	9	Unmodified	_AEVKERVTL_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8063354492188	2	522.806031	1043.59751	1.6253	0.0008497	-1.1017	-0.00057598	0.52357	0.00027373	522.8053986575064	24.714	0.25718	24.714	24.611	24.869	0					15	5	4	0	0	0	0.095583	1	8572	8572		80.455	11.608	1	1305200			1368	897	761	766	1378	1378					0.07745414506052839
AEVKERVTL	9	Unmodified	_AEVKERVTL_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.8731384277344	3	348.873113	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.723	1	24.723	24.223	25.223	0								0	0	0	0.15451	1	8564	8564		85.161	35.625	1				1369	897	761	766	1379	1379					0.07745414506052839
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7739868164062	2	520.7742	1039.53385	0.071681	3.7329E-05	0.19405	0.00010105	0.26573	0.00013838	520.7742143472386	35.657	0.23489	35.657	35.594	35.829	0					15	6	3	0	0	0	0.1424	1	13386	13386		69.628	27.231	1	162120			1370	5914	762	767	1380	1380					0.01566054068939593
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7747802734375	2	520.7742	1039.53385	0.29762	0.00015499	-0.17964	-9.3551E-05	0.11798	6.144E-05	520.7744006891585	35.433	0.27256	35.433	35.332	35.604	0					29	13	3	0	0	0	0.28897	1	11972	11972		51.193	10.415	1	181360			1371	5914	762	767	1381	1381					0.01566054068939593
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7744750976562	2	520.7742	1039.53385	1.711	0.00089105	-1.1164	-0.00058139	0.59463	0.00030967	520.7737526209838	35.643	0.2957	35.643	35.532	35.828	0					27	8	4	0	0	0	0.023928	1	13819	13819		115.49	54.522	1	1595200			1372	5914	762	767	1382	1382					0.01566054068939593
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.774169921875	2	520.7742	1039.53385	1.0268	0.00053471	0.59435	0.00030952	1.6211	0.00084423	520.7744595490792	35.426	0.22834	35.426	35.351	35.579	0					17	8	3	0	0	0	0.1424	1	12613	12613		69.628	18.435	1	181790			1373	5914	762	767	1383	1383					0.01566054068939593
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7748413085938	2	520.7742	1039.53385	-1.338	-0.00069679	2.7834	0.0014495	1.4454	0.00075275	520.7756636887063	35.432	0.22823	35.432	35.342	35.57	0					19	8	3	0	0	0	0.098791	1	12621	12621		79.713	26.776	1	181370			1374	5914	762	767	1384	1384					0.01566054068939593
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.774169921875	2	520.7742	1039.53385	1.6238	0.00084561	-1.2169	-0.00063372	0.40689	0.0002119	520.7735240588687	35.58	0.4712	35.58	35.313	35.784	0					22	9	4	0	0	0	0.026538	1	13736	13736		112.41	40.533	1	2135400			1375	5914	762	767	1385	1385					0.01566054068939593
AEVKKPAAA	9	Unmodified	_AEVKKPAAA_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.7635192871094	2	442.763635	883.512717	-0.28979	-0.00012831	-0.40926	-0.0001812	-0.69905	-0.00030952	442.7634997852855	15.113	0.36849	15.113	14.836	15.204	0					24	15	2	0	0	0	0.22377	1	3182	3182		58.782	9.3404	1	180900			1376	4869	763	768	1386	1386					0.0663008876007325
AEVKKPAAA	9	Unmodified	_AEVKKPAAA_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.76348876953125	2	442.763635	883.512717	-0.3448	-0.00015267	-0.11708	-5.1838E-05	-0.46188	-0.0002045	442.7636199952816	15.405	0.47983	15.405	15.01	15.49	0					29	11	3	0	0	0	0.098791	1	3919	3919		79.713	4.6693	1	1380600			1377	4869	763	768	1387	1387					0.0663008876007325
AEVLNKHSL	9	Unmodified	_AEVLNKHSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.7851257324219	2	505.785099	1009.55564	-0.075987	-3.8433E-05	0.18545	9.3795E-05	0.10946	5.5362E-05	505.78500409674126	22.864	0.14384	22.864	22.774	22.918	0					10	4	3	0	0	0	0.16806	1	6540	6540		65.465	5.3471	1	316700			1378	1937	764	769	1388	1388					0.051248588175326404
AEVLNKHSL	9	Unmodified	_AEVLNKHSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.78509521484375	2	505.785099	1009.55564	-0.67167	-0.00033972	0.78079	0.00039491	0.10912	5.5192E-05	505.7855129704387	22.933	0.18842	22.933	22.809	22.998	0					10	6	2	0	0	0	0.0406	1	6826	6826		98.629	0	1	335190			1379	1937	764	769	1389	1389					0.051248588175326404
AEVLNNVQLIK	11	Unmodified	_AEVLNNVQLIK_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	620.8667602539062	2	620.86662	1239.71869	-0.67893	-0.00042153	1.0213	0.00063407	0.34234	0.00021255	620.8673363995586	27.184	0.17781	27.184	27.075	27.253	0					14	6	3	0	0	0	0.37395	1	8621	8621		45.022	0	1	107400	+		1380	13475	765	770	1390	1390					0.10841617148707883
AEVNPGRVY	9	Unmodified	_AEVNPGRVY_					0	0	0			REV__ARFGEF2-SULF2|2|fusion	REV__ARFGEF2-SULF2|2|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7621765136719	2	502.761623	1003.50869	-0.068621	-3.45E-05	1.4814	0.0007448	1.4128	0.0007103	502.7625687438216	31.826	0.37431	31.826	31.685	32.059	0					17	9	3	0	0	0	0.14603	1	11629	11629		68.787	1.2932	1	318560	+		1381	12195	766	771	1391	1391					0.007079992663761914
AEVNQETIQRL	11	Unmodified	_AEVNQETIQRL_					0	0	0		ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	650.8450317382812	2	650.846416	1299.67828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.494	1	33.494	32.994	33.994	0								0	0	0	0.354	1	12824	12824		42.338	20.378	1				1382	1017	767	772	1392	1392					0.04042650758265154
AEVPLPSPVQ	10	Unmodified	_AEVPLPSPVQ_					0	0	0		ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7899169921875	2	518.787307	1035.56006	1.589	0.00082435	-1.0202	-0.00052929	0.56875	0.00029506	518.7868476645073	39.632	0.18724	39.632	39.513	39.701	0					6	4	2	0	0	0	0.49411	1	15662	15662		45.972	3.5761	1	185870			1383	9338	768	773	1393	1393					0.04370323240414109
AEVQGRSDG	9	Unmodified	_AEVQGRSDG_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7169494628906	2	459.717413	917.420273	-0.15487	-7.1196E-05	-0.67101	-0.00030847	-0.82588	-0.00037967	459.717109187672	15.301	0.20852	15.301	15.242	15.451	0					10	4	3	0	0	0	0.2873	1	4164	4164		51.335	51.335	1	230130			1384	1753	769	774	1394	1394					-0.04174041044097976
AEVQKLQAL	9	Unmodified	_AEVQKLQAL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.294677734375	2	500.295299	998.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.548	1	31.548	31.048	32.048	0								0	0	0	0.11736	1	10876	10876		67.494	16.301	1				1385	3486	770	775	1395	1395					0.07670029477310436
AEVQKLQAL	9	Unmodified	_AEVQKLQAL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2952575683594	2	500.295299	998.576045	2.9205	0.0014611	-3.1488	-0.0015753	-0.2283	-0.00011422	500.2937112827367	31.743	0.21889	31.743	31.633	31.852	0					11	4	4	0	0	0	0.085655	1	11914	11914		82.75	16.321	1	410260			1386	3486	770	775	1396	1396					0.07670029477310436
AEVREKQLS	9	Unmodified	_AEVREKQLS_					0	0	0			REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.29345703125	2	530.293288	1058.57202	1.2056	0.00063931	-1.0615	-0.0005629	0.14409	7.6412E-05	530.2928455557234	18.751	0.098457	18.751	18.676	18.775	0					4	2	2	0	0	0	0.22837	1	4957	4957		58.23	1.7961	1	119260	+		1387	21127	771	776	1397	1397					0.04507939983614051
AEVRKIIRV	9	Unmodified	_AEVRKIIRV_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.9046936035156	3	361.904747	1082.69241	0.48004	0.00017373	-0.52936	-0.00019158	-0.049323	-1.785E-05	361.90455176773537	23.826	0.33071	23.826	23.721	24.052	0					18	7	3	0	0	0	0.19952	1	7950	7950		61.691	21.633	1	668290			1388	1166	772	777	1398	1398					0.15437392767898928
AEVRVYGGE	9	Unmodified	_AEVRVYGGE_					0	0	0		nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2450866699219	2	490.245806	978.47706	-1.2564	-0.00061594	0.69491	0.00034068	-0.56147	-0.00027526	490.24611627556817	27.345	0.49323	27.345	27.247	27.74	0					28	17	3	0	0	0	0.28897	1	8679	8679		53.351	10.955	1	251410			1389	5452	773	778	1399	1399					-0.013039934875678227
AEVSAVRLKK	10	Unmodified	_AEVSAVRLKK_					0	0	0		ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8428344726562	2	550.842948	1099.67134	0.56243	0.00030981	-2.3379	-0.0012878	-1.7755	-0.00097802	550.84164232502	20.059	0.15611	20.059	19.954	20.11	0					8	3	3	0	0	0	0.36476	1	6172	6172		60.118	8.9256	1	507410			1390	8099	774	779	1400	1400					0.1254938266836234
AEVSDEKVIQ	10	Unmodified	_AEVSDEKVIQ_					0	0	0			REV__ENSG00000105647|ENST00000222254|PIK3R2	REV__ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.2911987304688	2	559.290411	1116.56627	-0.45965	-0.00025708	1.2191	0.00068183	0.75946	0.00042476	559.291028397091	26.683	0.11458	26.683	26.619	26.734	0					7	4	2	0	0	0	0.50881	1	8432	8432		44.377	0.7264	1	60940	+		1391	13786	775	780	1401	1401					0.012647966812892264
AEVSVPKEL	9	Unmodified	_AEVSVPKEL_					0	0	0		ENST00000553041.5_1_12:96414526-96429297:-|nuORF;nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H	ENST00000553041.5_1_12:96414526-96429297:-|nuORF	ENST00000553041.5_1_12:96414526-96429297:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2730712890625	2	486.274032	970.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.876	1	33.876	33.376	34.376	0								0	0	0	0.27939	1	11051	11051		39.253	1.7447	1				1392	2652	776	781	1402	1402					0.0470663434908829
AEVTKQVSM	9	Unmodified	_AEVTKQVSM_					0	0	0		nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	nc|ENSG00000127946|O00291-3|HIP1	nc|ENSG00000127946|O00291-3|HIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.75732421875	2	496.757692	991.500831	0.71854	0.00035694	-1.0109	-0.00050215	-0.29232	-0.00014521	496.75708830032016	24.493	0.18012	24.493	24.405	24.585	0					6	4	2	0	0	0	0.25761	1	8269	8269		54.722	6.7628	1	287230			1393	3521	777	782	1403	1403					0.004741039545933745
AEVTKVVV	8	Unmodified	_AEVTKVVV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7605895996094	2	422.760561	843.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.522	1	27.522	27.022	28.022	0								0	0	0	1.7419	1	8492	8492		64.207	5.4253	1				1394	5985	778	783	1404	1404					0.07855570528568023
AEVTKVVV	8	Unmodified	_AEVTKVVV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7601318359375	2	422.760561	843.506569	-0.028758	-1.2158E-05	0.46112	0.00019494	0.43236	0.00018279	422.76077209219164	27.608	0.13498	27.608	27.494	27.629	0					5	3	2	0	0	0	0.59773	1	9053	9053		49.442	5.3247	1	49844			1395	5985	778	783	1405	1405					0.07855570528568023
AEVTKVVV	8	Unmodified	_AEVTKVVV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7603454589844	2	422.760561	843.506569	-0.34544	-0.00014604	0.55687	0.00023542	0.21143	8.9384E-05	422.7607650842793	27.721	0.21848	27.721	27.611	27.829	0					9	4	3	0	0	0	0.41	1	9966	9966		69.628	3.1983	1	167280			1396	5985	778	783	1406	1406					0.07855570528568023
AEVTSHAA	8	Unmodified	_AEVTSHAA_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.19317626953125	2	393.193042	784.371532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.324	1	15.324	14.824	15.824	0								0	0	0	1.7419	1	3933	3933		42.474	0	1				1397	1248	779	784	1407	1407					-0.029279096131972437
AEVTSHAA	8	Unmodified	_AEVTSHAA_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.1930847167969	2	393.193042	784.371532	0.88843	0.00034932	-0.68414	-0.000269	0.20429	8.0326E-05	393.192759903702	15.288	0.13942	15.288	15.241	15.38	0					5	3	2	0	0	0	0.61938	1	3926	3926		45.952	3.4775	1	195580			1398	1248	779	784	1408	1408					-0.029279096131972437
AEVTSHAA	8	Unmodified	_AEVTSHAA_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.19287109375	2	393.193042	784.371532	0.12312	4.8411E-05	-0.5244	-0.00020619	-0.40128	-0.00015778	393.19281388707986	15.251	0.11025	15.251	15.196	15.306	0					4	2	2	0	0	0	0.30437	2	4141	4123;4141		82.305	24.494	1	276770			1399	1248	779	784	1409;1410	1410					-0.029279096131972437
AEVTSHAA	8	Unmodified	_AEVTSHAA_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.1930236816406	2	393.193042	784.371532	-0.66581	-0.00026179	0.78381	0.00030819	0.118	4.6396E-05	393.19331766988256	15.221	0.16843	15.221	15.162	15.33	0					5	3	2	0	0	0	0.34985	1	3975	3975		76.847	16.553	1	405040			1400	1248	779	784	1411	1411					-0.029279096131972437
AEVVGDVSKL	10	Unmodified	_AEVVGDVSKL_					0	0	0			REV__tr|U7T242|U7T242_FUSNUMalonylCoA-acylcarrierproteintransacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00462PE=3SV=1	REV__tr|U7T242|U7T242_FUSNUMalonylCoA-acylcarrierproteintransacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00462PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7851867675781	2	508.784764	1015.55498	-0.42779	-0.00021765	0.4089	0.00020804	-0.018894	-9.613E-06	508.7849111746184	33.407	0.15443	33.407	33.355	33.51	0					15	6	3	0	0	0	0.15878	1	11201	11201		85.161	1.5138	1	325450	+		1401	22090	780	785	1412	1412					0.04782019377819324
AEVVLAHL	8	Unmodified	_AEVVLAHL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.2530212402344	2	426.252903	850.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.357	1	38.357	37.857	38.857	0								0	0	0	1.7419	1	14571	14571		96.048	30.15	1				1402	5621	781	786	1413	1413					0.060027037313602705
AEVVLAHL	8	Unmodified	_AEVVLAHL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.2527770996094	2	426.252903	850.491253	0.89721	0.00038244	-0.94964	-0.00040479	-0.052436	-2.2351E-05	426.2523647011908	38.336	0.11479	38.336	38.287	38.402	0					7	4	2	0	0	0	0.29779	1	14567	14567		83.287	28.523	1	69255			1403	5621	781	786	1414	1414					0.060027037313602705
AEVVLAHL	8	Unmodified	_AEVVLAHL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.2528381347656	2	426.252903	850.491253	-0.42192	-0.00017985	-0.19723	-8.4072E-05	-0.61916	-0.00026392	426.25292635319005	38.33	0.1753	38.33	38.228	38.404	0					10	6	2	0	0	0	0.23567	1	15023	15023		119.22	35.934	1	109280			1404	5621	781	786	1415	1415					0.060027037313602705
AEVVLAHL	8	Unmodified	_AEVVLAHL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.25299072265625	2	426.252903	850.491253	0.15977	6.8104E-05	0.41924	0.0001787	0.57901	0.00024681	426.2530032478153	38.074	0.060326	38.074	38.035	38.095	0					5	3	2	0	0	0	0.55361	1	13628	13628		54.765	14.192	1	41964			1405	5621	781	786	1416	1416					0.060027037313602705
AEVVLAHL	8	Unmodified	_AEVVLAHL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.2524108886719	2	426.252903	850.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.245	1	38.245	37.745	38.745	0								0	0	0	1.7419	1	15022	15022		105.27	33.891	1				1406	5621	781	786	1417	1417					0.060027037313602705
AEWDETYLK	9	Unmodified	_AEWDETYLK_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.770263671875	2	577.771854	1153.52915	-0.066131	-3.8208E-05	-2.8803	-0.0016642	-2.9464	-0.0017024	577.7708207159486	27.163	0.38489	27.163	27.075	27.46	0					22	9	5	0	0	0	0.24334	1	9446	9446		40.778	0	1	1278800	+		1407	16914	782	787	1418	1418					-0.04146874864477468
AEWDWLCV	8	Unmodified	_AEWDWLCV_					0	0	0		nc|ENSG00000111266|Q9BY84-2|DUSP16	nc|ENSG00000111266|Q9BY84-2|DUSP16	nc|ENSG00000111266|Q9BY84-2|DUSP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.81378173828125	2	511.226028	1020.4375	-0.37692	-0.00019269	2.533	0.0012949	2.1561	0.0011023	511.2270398297631	19.573	0.22746	19.573	19.484	19.711	0					14	7	3	0	0	0	0.64096	1	5316	5316		42.474	1.9018	1	98875			1408	11481	783	788	1419	1419					-0.07189836762643154
AEWPRGRR	8	Unmodified	_AEWPRGRR_					0	0	0			REV__FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant	REV__FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.18927001953125	3	343.189658	1026.54715	-0.7511	-0.00025777	-0.18595	-6.3816E-05	-0.93705	-0.00032158	343.1895176724312	18.903	0.17356	18.903	18.827	19	0					9	5	2	0	0	0	0.7126	1	5035	5035		31.955	8.9124	1	155710	+		1409	15814	784	789	1420	1420					0.03493349691552794
AEWVAPIVIT	10	Unmodified	_AEWVAPIVIT_					0	0	0			REV__AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|1|1|sense	REV__AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|1|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8141479492188	2	549.813325	1097.6121	1.8233	0.0010025	-0.55433	-0.00030478	1.269	0.00069769	549.8131409240141	14.5	0.37059	14.5	14.391	14.761	0					16	7	3	0	0	0	0.3337	1	3630	3630		51.335	3.6781	1	935710	+		1410	12147	785	790	1421	1421					0.06719486654151297
AEWYKELDSNI	11	Unmodified	_AEWYKELDSNI_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	684.32763671875	2	684.327524	1366.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.068	1	32.068	31.568	32.568	0								0	0	0	0.39826	1	10679	10679		37.508	9.4267	1		+		1411	21058	786	791	1422	1422					-0.02815860227178746
AEWYKELDSNI	11	Unmodified	_AEWYKELDSNI_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	684.326416015625	2	684.327524	1366.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.686	1	33.686	33.186	34.186	0								0	0	0	0.39826	1	11320	11320		37.508	3.5865	1		+		1412	21058	786	791	1423	1423					-0.02815860227178746
AEWYKELDSNI	11	Unmodified	_AEWYKELDSNI_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	684.327392578125	2	684.327524	1366.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.306	1	32.306	31.806	32.806	0								0	0	0	0.43372	1	11222	11222		29.551	0.38069	1		+		1413	21058	786	791	1424	1424					-0.02815860227178746
AEWYKELDSNI	11	Unmodified	_AEWYKELDSNI_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-7|TMEM44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	684.3289794921875	2	684.327524	1366.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.113	1	33.113	32.613	33.613	0								0	0	0	0.28948	1	11587	11587		53.597	20.784	1		+		1414	21058	786	791	1425	1425					-0.02815860227178746
AEYAANTTK	9	Unmodified	_AEYAANTTK_					0	0	0		ENST00000482597.5_2_1:202152523-202152759:+|nuORF	ENST00000482597.5_2_1:202152523-202152759:+|nuORF	ENST00000482597.5_2_1:202152523-202152759:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7393798828125	2	484.737814	967.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.659	1	17.659	17.159	18.159	0								0	0	0	0.024201	1	5136	5136		98.629	7.8527	1				1415	9970	787	792	1426	1426					-0.023956997244908962
AEYELRNTI	9	Unmodified	_AEYELRNTI_					0	0	0			REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7860107421875	2	554.785296	1107.55604	-0.042819	-2.3755E-05	-2.5625	-0.0014216	-2.6053	-0.0014454	554.7843517527184	30.488	0.25279	30.488	30.294	30.546	0					9	5	2	0	0	0	0.28897	1	11369	11369		51.193	3.2332	1	91688	+		1416	17050	788	793	1427	1427					0.006562337467130419
AEYFQLAAGY	10	Unmodified	_AEYFQLAAGY_					0	0	0			REV__DENND4B|p.P955Lfs*5|1|0.53|ENSG00000198837|chr1:153934212-153934212|G/-|frameshift_variant	REV__DENND4B|p.P955Lfs*5|1|0.53|ENSG00000198837|chr1:153934212-153934212|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.7709350585938	2	566.769114	1131.52368	3.4712	0.0019674	0.088319	5.0057E-05	3.5595	0.0020174	566.769296637641	35.204	0.62336	35.204	35.097	35.721	0					32	12	3	0	0	0	0.22198	1	13556	13556		76.774	7.1465	1	3788300	+		1417	12695	789	794	1428	1428					-0.03682553656290111
AEYGEIKNIHL	11	Unmodified	_AEYGEIKNIHL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.5626220703125	3	429.562827	1285.66665	1.0142	0.00043565	-1.7574	-0.00075492	-0.74324	-0.00031927	429.5620499882301	37.06	0.25987	37.06	37.008	37.268	0					8	5	3	0	0	0	0.50799	1	14471	14471		43.651	2.5707	1	290800			1418	8066	790	795	1429	1429					0.035244537349626626
AEYGPQGRA	9	Unmodified	_AEYGPQGRA_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7304992675781	2	474.730323	947.446094	-0.011362	-5.3939E-06	0.5668	0.00026908	0.55543	0.00026368	474.7307006329443	19.448	0.16457	19.448	19.338	19.503	0					7	5	2	0	0	0	0.41113	1	5038	5038		40.778	1.5253	1	44529			1419	1085	791	796	1430	1430					-0.029731468017985208
AEYGPQGRA	9	Unmodified	_AEYGPQGRA_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.730224609375	2	474.730323	947.446094	-0.4463	-0.00021187	-0.20597	-9.7782E-05	-0.65227	-0.00030965	474.7304855656434	19.481	0.23143	19.481	19.356	19.587	0					7	5	2	0	0	0	0.41113	1	5320	5320		40.778	1.5253	1	39654			1420	1085	791	796	1431	1431					-0.029731468017985208
AEYGPQGRA	9	Unmodified	_AEYGPQGRA_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.73004150390625	2	474.730323	947.446094	-0.60232	-0.00028594	0.30621	0.00014537	-0.29611	-0.00014057	474.7305149764594	19.634	0.3152	19.634	19.442	19.757	0					14	6	3	0	0	0	0.19605	1	6125	6125		62.107	7.3311	1	282120			1421	1085	791	796	1432	1432					-0.029731468017985208
AEYGPQGRAF	10	Unmodified	_AEYGPQGRAF_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2644653320312	2	548.26453	1094.51451	0.40515	0.00022213	0.76507	0.00041946	1.1702	0.00064159	548.2649943857004	29.514	0.2767	29.514	29.377	29.653	0					17	10	2	0	0	0	0.54197	1	9603	9603		40.778	7.2626	1	106920			1422	1085	792	797	1433	1433					-0.028969022219371254
AEYGPQGRAF	10	Unmodified	_AEYGPQGRAF_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2646484375	2	548.26453	1094.51451	1.7854	0.00097888	-0.91245	-0.00050026	0.87297	0.00047862	548.263857487874	29.758	0.55448	29.758	29.553	30.107	0					20	11	3	0	0	0	0.17315	1	11066	11066		82.75	34.835	1	609080			1423	1085	792	797	1434	1434					-0.028969022219371254
AEYGPQGRAF	10	Unmodified	_AEYGPQGRAF_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.265380859375	2	548.26453	1094.51451	1.1566	0.00063411	0.70832	0.00038835	1.8649	0.0010225	548.2649815750378	29.579	0.28704	29.579	29.379	29.666	0					11	7	2	0	0	0	0.2538	1	9948	9948		72.879	26.927	1	77367			1424	1085	792	797	1435	1435					-0.028969022219371254
AEYGPQGRAF	10	Unmodified	_AEYGPQGRAF_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.26513671875	2	548.26453	1094.51451	-1.5071	-0.00082628	3.2439	0.0017785	1.7368	0.00095225	548.2661493381405	29.512	0.28731	29.512	29.367	29.655	0					12	7	2	0	0	0	0.34667	1	9941	9941		62.107	10.772	1	77160			1425	1085	792	797	1436	1436					-0.028969022219371254
AEYGPQGRAF	10	Unmodified	_AEYGPQGRAF_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2650146484375	2	548.26453	1094.51451	3.8171	0.0020928	-2.3727	-0.0013009	1.4444	0.00079191	548.2629362856798	29.672	0.4067	29.672	29.472	29.879	0					20	8	4	0	0	0	0.2538	1	10913	10913		72.879	24.92	1	789660			1426	1085	792	797	1437	1437					-0.028969022219371254
AEYHAKATEHL	11	Unmodified	_AEYHAKATEHL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.87957763671875	3	423.878926	1268.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.573	1	19.573	19.073	20.073	0								0	0	0	0.2788	1	5929	5929		55.084	23.45	1				1427	3063	793	798	1438	1438					-0.008612899589479639
AEYPAVKF	8	Unmodified	_AEYPAVKF_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.74462890625	2	462.744911	923.475269	2.5748	0.0011915	-3.3961	-0.0015715	-0.82128	-0.00038004	462.7432092222378	37.359	0.45198	37.359	36.948	37.4	0					16	9	2	0	0	0	0.5676	1	14558	14558		53.351	2.016	1	226660			1428	4133	794	799	1439	1439					0.010469974944726346
AEYSSMVRP	9	Unmodified	_AEYSSMVRP_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7515869140625	2	520.247492	1038.48043	0.65407	0.00034028	0.38603	0.00020083	1.0401	0.00054111	520.246841551736	29.277	0.18826	29.277	29.151	29.339	0					13	7	3	0	0	0	0.61124	1	9214	9214		16.473	0.83134	1	74569			1429	4881	795	800	1440	1440					-0.03727066705209836
AEYSTKNNAL	10	Unmodified	_AEYSTKNNAL_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.7747802734375	2	555.774928	1109.5353	1.3048	0.0007252	-0.91243	-0.00050711	0.39241	0.00021809	555.7742057153665	23.403	0.17806	23.403	23.324	23.502	0					10	5	3	0	0	0	0.38179	1	6760	6760		58.246	17.468	1	177970			1430	3580	796	801	1441	1441					-0.015083566329394671
AEYSTKNNAL	10	Unmodified	_AEYSTKNNAL_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.775390625	2	555.774928	1109.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.703	1	23.703	23.203	24.203	0								0	0	0	0.04026	1	7884	7884		93.598	38.821	1				1431	3580	796	801	1442	1442					-0.015083566329394671
AEYSTKNNAL	10	Unmodified	_AEYSTKNNAL_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.775390625	2	555.774928	1109.5353	0.11452	6.3648E-05	0.77138	0.00042871	0.8859	0.00049236	555.7752403551926	23.428	0.12463	23.428	23.368	23.493	0					11	4	3	0	0	0	0.14151	1	7031	7031		88.177	32.673	1	478230			1432	3580	796	801	1443	1443					-0.015083566329394671
AEYSTKNNAL	10	Unmodified	_AEYSTKNNAL_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7754516601562	2	555.774928	1109.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.633	1	23.633	23.133	24.133	0								0	0	0	0.019722	1	8169	8169		117.81	51.382	1				1433	3580	796	801	1444	1444					-0.015083566329394671
AEYSTKNNAL	10	Unmodified	_AEYSTKNNAL_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7752685546875	2	555.774928	1109.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.633	1	23.633	23.133	24.133	0								0	0	0	0.010524	1	8039	8039		101.46	24.142	1				1434	3580	796	801	1445	1445					-0.015083566329394671
AEYTAKIAL	9	Unmodified	_AEYTAKIAL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2765197753906	2	490.276575	978.538597	-1.2562	-0.00061591	1.1679	0.0005726	-0.088345	-4.3313E-05	490.2770549566384	36.209	0.21681	36.209	36.129	36.346	0					24	10	3	0	0	0	0.30841	1	12263	12263		49.536	3.5841	1	153350			1435	1878	797	802	1446	1446					0.04846938211710494
AEYTAKIAL	9	Unmodified	_AEYTAKIAL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.27618408203125	2	490.276575	978.538597	0.59613	0.00029227	-0.8444	-0.00041399	-0.24827	-0.00012172	490.27612486940245	36.401	0.3674	36.401	36.242	36.61	0					25	10	4	0	0	0	0.035062	1	14176	14176		104.06	26.739	1	897940			1436	1878	797	802	1447	1447					0.04846938211710494
AEYVVRTFA	9	Unmodified	_AEYVVRTFA_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU;TRNAU1AP-PTPRU|3|fusion	TRNAU1AP-PTPRU|3|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	352.85491943359375	3	352.522192	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.288	1	21.288	20.788	21.788	0								0	0	0	0.14033	1	5841	5841		62.107	5.3864	1				1437	1319;23068	798	803	1448	1448					0.0196545644323578
AFAIWRML	8	Unmodified	_AFAIWRML_					0	0	0			REV__TMEM104|p.V362Sfs*13|1|0.42|ENSG00000109066|chr17:74836276-74836276|C/-|frameshift_variant	REV__TMEM104|p.V362Sfs*13|1|0.42|ENSG00000109066|chr17:74836276-74836276|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2796936035156	2	504.278398	1006.54224	2.9307	0.0014779	-0.97547	-0.00049191	1.9552	0.00098597	504.277875296207	37.374	1.1881	37.374	36.744	37.932	0					46	24	2	0	0	0	0.4723	2	14505	14505;14716		62.978	9.627	1	5340000	+		1438	13892	799	804	1449;1450	1449					0.03923329504584672
AFAKLSEL	8	Unmodified	_AFAKLSEL_					0	0	0		ENSG00000213931|ENST00000396895|HBE1	ENSG00000213931|ENST00000396895|HBE1	ENSG00000213931|ENST00000396895|HBE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.7523193359375	2	439.752736	877.490919	-0.35353	-0.00015546	-0.023794	-1.0463E-05	-0.37732	-0.00016593	439.7527069871645	36.386	0.147	36.386	36.292	36.439	0					7	4	2	0	0	0	0.26534	1	14148	14148		94.006	6.2521	1	134160			1439	7800	800	805	1451	1451					0.04727284011505617
AFANSGNAI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AFANSGNAI_					1	0	0		ENSG00000055483|ENST00000449938|USP36;USP36|p.K688Nfs*35|1|0.21|ENSG00000055483|chr17:78806980-78806980|T/-|frameshift_variant;USP36|p.P187S|1|0.33|ENSG00000055483|chr17:78828924-78828924|G/A|missense_variant	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7192077636719	2	453.719424	905.424296	-0.34862	-0.00015818	-0.24615	-0.00011168	-0.59477	-0.00026986	453.71931463042887	24.161	0.22161	24.161	24.087	24.309	0					15	7	3	0	0	0	0.1115	1	7083	7083		76.774	13.468	1	420490			1440	1281	801	806	1452	1452					-0.03219951550386213
AFAYRQGL	8	Unmodified	_AFAYRQGL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2462158203125	2	463.248152	924.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.622	1	16.622	16.122	17.122	0								0	0	0	1.7419	1	4541	4541		46.766	4.292	1				1441	7845	802	807	1453	1453					0.016489354458599337
AFCNADVVIRA	11	Unmodified	_AFCNADVVIRA_					0	0	0		ENSG00000035862|ENST00000262768|TIMP2	ENSG00000035862|ENST00000262768|TIMP2	ENSG00000035862|ENST00000262768|TIMP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.53826904296875	3	393.537736	1177.59138	3.1808	0.0012518	-2.2761	-0.00089571	0.9048	0.00035607	393.53680993236435	40.172	0.50102	40.172	40.034	40.535	0					15	11	2	0	0	0	0.67983	1	15941	15941		29.551	0.97402	1	183070			1442	1169	803	808	1454	1454					0.009685730028650141
AFCVGWSWSN	10	Unmodified	_AFCVGWSWSN_					0	0	0		ENST00000377843.6_1_5:148930905-148930962:-|nuORF	ENST00000377843.6_1_5:148930905-148930962:-|nuORF	ENST00000377843.6_1_5:148930905-148930962:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.7472534179688	2	578.747659	1155.48076	-1.6624	-0.0009621	0.7868	0.00045536	-0.87558	-0.00050674	578.7479996847011	16.291	0.14987	16.291	16.253	16.403	0					8	4	2	0	0	0	0.55603	1	3837	3837		39.253	5.0803	1	130980			1443	9057	804	809	1455	1455					-0.09075646985343155
AFELEAKKL	9	Unmodified	_AFELEAKKL_					0	0	0			REV__nc|ENSG00000168675|O15165-7|LDLRAD4	REV__nc|ENSG00000168675|O15165-7|LDLRAD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8035278320312	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.961	1	12.961	12.461	13.461	0								0	0	0	0.30504	1	2890	2890		34.173	2.6427	1		+		1444	21112	805	810	1456	1456					0.07455200137110296
AFEQNNFIK	9	Unmodified	_AFEQNNFIK_					0	0	0			REV__SMAD3|p.L340P|1|0.31|ENSG00000166949|chr15:67187374-67187374|T/C|missense_variant	REV__SMAD3|p.L340P|1|0.31|ENSG00000166949|chr15:67187374-67187374|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7823486328125	2	555.782556	1109.55056	3.546	0.0019708	-2.249	-0.00125	1.297	0.00072083	555.7803550204794	23.752	0.61238	23.752	23.65	24.262	0					18	12	4	0	0	0	0.28897	1	8114	8114		35.618	0	1	890580	+		1445	14053	806	811	1457	1457					0.00016554954891034868
AFFNALQLG	9	Unmodified	_AFFNALQLG_					0	0	0			REV__ENSG00000100739|ENST00000216629|BDKRB1	REV__ENSG00000100739|ENST00000216629|BDKRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.26654052734375	2	490.763635	979.512717	2.6758	0.0013132	0.57246	0.00028094	3.2482	0.0015941	490.7641002568251	38.039	0.53064	38.039	37.77	38.3	0					19	11	2	0	0	0	0.49003	1	14900	14900		33.516	1.5607	1	171790	+		1446	13573	807	812	1458	1458					0.02214088760104005
AFFWSSTLT	9	Unmodified	_AFFWSSTLT_					0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.260986328125	2	530.260925	1058.5073	1.2037	0.00063826	0.32372	0.00017165	1.5274	0.00080991	530.2611540061126	39.746	1.1244	39.746	39.197	40.322	0					87	59	3	0	0	0	0.51817	1	14192	14192		30.504	3.8107	1	107890			1447	7782	808	813	1459	1459					-0.019616348223962632
AFGAAETQGP	10	Unmodified	_AFGAAETQGP_					0	0	0			REV__ENST00000300797.7_1_16:29823644-29824345:+|nuORF	REV__ENST00000300797.7_1_16:29823644-29824345:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7257080078125	2	474.724707	947.43486	0.6527	0.00030985	1.7321	0.00082226	2.3848	0.0011321	474.72568144224294	24.379	0.45561	24.379	24.188	24.643	0					21	10	3	0	0	0	0.39566	1	8210	8210		56.721	1.9447	1	520450	+		1448	18199	809	814	1460	1460					-0.040959688959446794
AFGIFNPVA	9	Unmodified	_AFGIFNPVA_					0	0	0			REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.25469970703125	2	468.252903	934.491253	-0.51381	-0.00024059	4.207	0.0019699	3.6932	0.0017293	468.25436192426514	33.115	0.14788	33.115	33.019	33.167	0					6	3	2	0	0	0	0.41354	1	12546	12546		40.573	3.4135	1	104620	+		1449	22135	810	815	1461	1461					0.021387037313729707
AFGKRKESF	9	Unmodified	_AFGKRKESF_					0	0	0		ENST00000470032.1_1_5:142416808-142421143:+|nuORF	ENST00000470032.1_1_5:142416808-142421143:+|nuORF	ENST00000470032.1_1_5:142416808-142421143:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2921752929688	2	535.293091	1068.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.1	1	43.1	42.6	43.6	0								0	0	0	0.27025	1	17238	17238		25.45	0.93098	1				1450	9834	811	816	1462	1462					0.04008565054414248
AFGPGAMPV	9	Unmodified	_AFGPGAMPV_					0	0	0			REV__ENST00000494697.5_1_20:2633306-2634895:+|nuORF	REV__ENST00000494697.5_1_20:2633306-2634895:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	423.7106628417969	2	423.712556	845.41056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.491	1	18.491	17.991	18.991	0								0	0	0	0.3269	1	4839	4839		29.842	3.0454	1		+		1451	19755	812	817	1463	1463					-0.018329005831674294
AFGPVHPPVD	10	Unmodified	_AFGPVHPPVD_					0	0	0			REV__sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1	REV__sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2672119140625	2	518.266542	1034.51853	1.5731	0.0008153	-0.23399	-0.00012127	1.3391	0.00069403	518.2663846326649	48.225	0.17305	48.225	48.167	48.34	0					11	8	2	0	0	0	0.56015	1	19180	19180		38.806	0.99462	1	65064	+		1452	21574	813	818	1464	1464					0.002651872717478909
AFGTRSTSP	9	Unmodified	_AFGTRSTSP_					0	0	0			REV__ENST00000514450.2_1_4:15471657-15513157:+|nuORF	REV__ENST00000514450.2_1_4:15471657-15513157:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2340393066406	2	462.232699	922.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.294	1	20.294	19.794	20.794	0								0	0	0	0.040851	1	6554	6554		90.37	21.583	1		+		1453	13020	814	819	1465	1465					-0.013482626590416658
AFHGWVLA	8	Unmodified	_AFHGWVLA_					0	0	0			REV__ENST00000500337.6_1_5:43453974-43454076:-|nuORF	REV__ENST00000500337.6_1_5:43453974-43454076:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7400207519531	2	450.739963	899.465373	-0.49028	-0.00022099	0.72261	0.00032571	0.23233	0.00010472	450.7402370220106	13.779	0.16542	13.779	13.694	13.859	0					8	4	3	0	0	0	0.77013	1	3218	3218		24.504	2.5441	1	515390	+		1454	19804	815	820	1466	1466					0.011618542797464215
AFHKTAYI	8	Unmodified	_AFHKTAYI_					0	0	0		ENST00000468123.1_1_2:202340421-202342983:+|nuORF	ENST00000468123.1_1_2:202340421-202342983:+|nuORF	ENST00000468123.1_1_2:202340421-202342983:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7596740722656	2	475.758352	949.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.839	1	33.839	33.339	34.339	0								0	0	0	1.7419	1	11919	11919		47.916	14.4	1				1455	9807	816	821	1467	1467					0.025381061056464205
AFHVCSQE	8	Unmodified	_AFHVCSQE_					0	0	0			REV__PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant	REV__PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.70159912109375	2	460.700177	919.385802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.966	1	12.966	12.466	13.466	0								0	0	0	1.7419	1	2893	2893		53.351	2.016	1		+		1456	16895	817	822	1468	1468					-0.07711580456543743
AFIAGAKMIL	10	Unmodified	_AFIAGAKMIL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.8081665039062	2	517.806988	1033.59942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.662	1	37.662	37.162	38.162	0								0	0	0	0.37276	1	12725	12725		38.806	4.6336	1				1457	2727	818	823	1469	1469					0.08396751990312623
AFIGLAFK	8	Unmodified	_AFIGLAFK_					0	0	0			REV__IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	REV__IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.7618408203125	2	433.760364	865.506175	-0.50422	-0.00021871	3.5567	0.0015427	3.0525	0.001324	433.7620538325793	32.178	0.21885	32.178	32.068	32.287	0					8	4	2	0	0	0	0.74117	1	12121	12121		28.254	7.7724	1	210880	+		1458	15085	819	824	1470	1470					0.06804195599374907
AFIQKSNLI	9	Unmodified	_AFIQKSNLI_					0	0	0		ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.3064575195312	2	517.305667	1032.59678	1.5198	0.00078621	-1.673	-0.00086543	-0.15313	-7.9217E-05	517.3046903014781	37.877	0.15383	37.877	37.81	37.964	0					11	5	3	0	0	0	0.061298	1	14835	14835		85.161	20.954	1	175140			1459	6010	820	825	1471	1471					0.08178619856994374
AFIQKSNLI	9	Unmodified	_AFIQKSNLI_					0	0	0		ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.3060302734375	2	517.305667	1032.59678	1.5524	0.00080307	-1.3506	-0.00069866	0.20184	0.00010441	517.3050030529499	37.825	0.16414	37.825	37.739	37.904	0					7	3	3	0	0	0	0.026848	1	14818	14818		95.815	21.56	1	269240			1460	6010	820	825	1472	1472					0.08178619856994374
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.29022216796875	2	499.289485	996.564418	1.0563	0.00052741	-0.78636	-0.00039262	0.26996	0.00013479	499.28917865212145	47.454	0.093555	47.454	47.396	47.489	0					7	5	2	0	0	0	0.41113	1	18942	18942		40.778	11.629	1	46971			1461	2021	821	826	1473	1473					0.06599832454003263
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2896728515625	2	499.289485	996.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.472	1	47.472	46.972	47.972	0								0	0	0	0.27025	1	18950	18950		40.778	8.8233	1				1462	2021	821	826	1474	1474					0.06599832454003263
AFLLKFVNS	9	Unmodified	_AFLLKFVNS_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.8720397949219	3	346.870932	1037.59097	-0.037489	-1.3004E-05	2.5882	0.00089776	2.5507	0.00088476	346.87196220253173	37.323	0.21453	37.323	37.219	37.434	0					9	4	3	0	0	0	0.5879	1	14595	14595		23.523	0	1	104470			1463	3728	822	827	1475	1475					0.07367521345327077
AFLRYMRQ	8	Unmodified	_AFLRYMRQ_					0	0	0		ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7904052734375	2	542.789661	1083.56477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.476	1	12.476	11.976	12.976	0								0	0	0	1.7419	1	2662	2662		8.8223	1.132	1				1464	4354	823	828	1476	1476					0.02632928902198728
AFLTNFALY	9	Unmodified	_AFLTNFALY_					0	0	0			REV__nc|ENSG00000187720|Q6ZMP0-3|THSD4	REV__nc|ENSG00000187720|Q6ZMP0-3|THSD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2783813476562	2	530.279118	1058.54368	0.28711	0.00015225	-2.7899	-0.0014794	-2.5028	-0.0013272	530.2780034056384	41.479	0.45222	41.479	41.23	41.683	0					32	19	3	0	0	0	0.30268	1	16283	16283		50.025	2.1089	1	196250	+		1465	21165	824	829	1477	1477					0.01675242074338712
AFLVRVPSSV	10	Unmodified	_AFLVRVPSSV_					0	0	0		nc|ENSG00000042813|Q9BS86-2|ZPBP;ENSG00000042813|ENST00000046087|ZPBP	nc|ENSG00000042813|Q9BS86-2|ZPBP	nc|ENSG00000042813|Q9BS86-2|ZPBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.88031005859375	3	358.88172	1073.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.284	1	16.284	15.784	16.784	0								0	0	0	0.34115	1	3827	3827		44.377	2.9506	1				1466	1204	825	830	1478	1478					0.08946308748318188
AFLVRVPSSV	10	Unmodified	_AFLVRVPSSV_					0	0	0		nc|ENSG00000042813|Q9BS86-2|ZPBP;ENSG00000042813|ENST00000046087|ZPBP	nc|ENSG00000042813|Q9BS86-2|ZPBP	nc|ENSG00000042813|Q9BS86-2|ZPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.8800048828125	3	358.88172	1073.62333	-2.0332	-0.00072968	-1.9017	-0.00068249	-3.9349	-0.0014122	358.8808873306989	16.273	0.15117	16.273	16.182	16.334	0					6	4	2	0	0	0	0.58189	1	3824	3824		36.447	3.6343	1	67945			1467	1204	825	830	1479	1479					0.08946308748318188
AFLWHLRP	8	Unmodified	_AFLWHLRP_					0	0	0			REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.1988220214844	3	347.199383	1038.57632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.948	1	40.948	40.448	41.448	0								0	0	0	1.7419	1	13647	13647		12.207	1.9416	1		+		1468	13403	826	831	1480	1480					0.05857493987855378
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(71)KGVFTF	0	0	1		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2683715820312	2	532.267696	1062.52084	1.7376	0.00092488	-1.1738	-0.00062477	0.56385	0.00030012	532.2672812015755	45.313	0.30291	45.313	45.214	45.517	0					27	12	3	0	0	0	0.13519	1	18127	18127		71.296	26.765	1	129720			1469	7965	827	832	1481	1481		324			-0.007921003148112504
AFMKGVFTF	9	Unmodified	_AFMKGVFTF_					0	0	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2719116210938	2	524.270238	1046.52592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.677	1	51.677	51.177	52.177	0								0	0	0	0.091069	1	20183	20183		74.255	35.002	1				1470	7965	827	833	1482	1482					0.004522035478203179
AFMKGVFTF	9	Unmodified	_AFMKGVFTF_					0	0	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2710571289062	2	524.270238	1046.52592	3.4314	0.001799	-1.364	-0.00071511	2.0674	0.0010839	524.2693717519978	51.702	0.17669	51.702	51.628	51.804	0					26	10	3	0	0	0	0.087861	1	20178	20178		82.241	45.081	1	136530			1471	7965	827	833	1483	1483					0.004522035478203179
AFMVNGQKF	9	Unmodified	_AFMVNGQKF_					0	0	0		nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-4|PRC1	nc|ENSG00000198901|O43663-4|PRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2620239257812	2	521.262945	1040.51134	1.6242	0.00084662	-3.3917	-0.001768	-1.7676	-0.00092136	521.2614382511434	37.233	0.21228	37.233	37.154	37.366	0					9	4	3	0	0	0	0.018785	1	14543	14543		123.99	17.574	1	157850			1472	7637	828	834	1484	1484					-0.007298686003196053
AFPAITFPG	9	Unmodified	_AFPAITFPG_					0	0	0		ELN|p.V85I|1|0.34|ENSG00000049540|chr7:74042634-74042634|G/A|missense_variant	ELN|p.V85I|1|0.34|ENSG00000049540|chr7:74042634-74042634|G/A|missense_variant	ELN|p.V85I|1|0.34|ENSG00000049540|chr7:74042634-74042634|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.74688720703125	2	460.747453	919.480354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.772	1	19.772	19.272	20.272	0								0	0	0	0.35507	1	5435	5435		24.203	1.6231	1				1473	907	829	835	1485	1485					0.01739301357088152
AFPEDLLIF	9	Unmodified	_AFPEDLLIF_					0	0	0			REV__tr|U7SVN4|U7SVN4_FUSNULipopolysaccharideexportsystemATP-bindingproteinLptBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01284PE=3SV=1	REV__tr|U7SVN4|U7SVN4_FUSNULipopolysaccharideexportsystemATP-bindingproteinLptBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01284PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7905883789062	2	532.786776	1063.559	1.7163	0.0009144	0.20698	0.00011028	1.9232	0.0010247	532.786786985587	34.653	0.36488	34.653	34.568	34.933	0					17	10	2	0	0	0	0.33044	1	13383	13383		40.573	0	1	430010	+		1474	21996	830	836	1486	1486					0.02976108871530414
AFPGLSVP	8	Unmodified	_AFPGLSVP_					0	0	0		ENST00000586944.5_1_19:806325-806721:+|nuORF	ENST00000586944.5_1_19:806325-806721:+|nuORF	ENST00000586944.5_1_19:806325-806721:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	263.14886474609375	3	263.149807	786.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.24	1	45.24	44.74	45.74	0								0	0	0	1.7419	1	14075	14075		18.324	6.8134	1				1475	10909	831	837	1487	1487					0.025833432942818035
AFPLHHHH	8	Unmodified	_AFPLHHHH_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2515563964844	2	498.25156	994.488568	0.21922	0.00010923	-1.1483	-0.00057215	-0.9291	-0.00046293	498.25103567954073	29.544	0.26401	29.544	29.459	29.723	0					17	9	2	0	0	0	0.63381	1	9334	9334		43.626	6.4669	1	81577	+		1476	15034	832	838	1488	1488					-0.008897068829242016
AFPPSSVPG	9	Unmodified	_AFPPSSVPG_					0	0	0			REV__ENST00000319080.7_12:122630330-122630822:+|nuORF	REV__ENST00000319080.7_12:122630330-122630822:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.719970703125	2	429.721436	857.428318	-0.28951	-0.00012441	-4.0247	-0.0017295	-4.3142	-0.0018539	429.7199623906855	14.771	0.080097	14.771	14.72	14.8	0					5	3	2	0	0	0	0.49003	1	3200	3200		33.516	4.366	1	47875	+		1477	18320	833	839	1489	1489					-0.0060986205666040405
AFPQRGGRL	9	Unmodified	_AFPQRGGRL_					0	0	0			REV__ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	REV__ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2859191894531	2	501.2856	1000.55665	0.93513	0.00046877	-0.34134	-0.00017111	0.59379	0.00029766	501.28570617607886	40.543	0.235	40.543	40.441	40.676	0					11	9	2	0	0	0	0.45358	1	15992	15992		37.159	2.0071	1	101190	+		1478	17627	834	840	1490	1490					0.05639117977091246
AFPSLWLSF	9	Unmodified	_AFPSLWLSF_					0	0	0			REV__ENST00000533727.5_1_11:46569951-46615452:-|nuORF	REV__ENST00000533727.5_1_11:46569951-46615452:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2821044921875	2	534.28166	1066.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.099	1	37.099	36.599	37.599	0								0	0	0	0.22106	1	14490	14490		47.916	0.25827	1		+		1479	20086	835	841	1491	1491					0.018155459369381788
AFQFQDTF	8	Unmodified	_AFQFQDTF_					0	0	0			REV__nc|ENSG00000120594|Q6UX71-2|PLXDC2	REV__nc|ENSG00000120594|Q6UX71-2|PLXDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2276916503906	2	502.229625	1002.4447	-0.075092	-3.7714E-05	-1.5623	-0.00078464	-1.6374	-0.00082236	502.2288897997677	29.204	0.48882	29.204	28.957	29.445	0					21	12	2	0	0	0	0.54629	1	10414	10414		55.504	2.1528	1	310720	+		1480	14287	836	842	1492	1492					-0.05642780890570975
AFRVSRSSG	9	Unmodified	_AFRVSRSSG_					0	0	0			REV__ENSG00000135443|ENST00000257901|KRT85	REV__ENSG00000135443|ENST00000257901|KRT85	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7603759765625	2	483.759415	965.504277	-0.61042	-0.0002953	2.3811	0.0011519	1.7707	0.00085661	483.7608946025287	34.891	0.1173	34.891	34.819	34.937	0					8	5	2	0	0	0	0.45358	1	11788	11788		37.159	8.0096	1	82726	+	+	1481	12598	837	843	1493	1493					0.02014534843488036
AFSKDESK	8	Unmodified	_AFSKDESK_					0	0	0		nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1	nc|ENSG00000149294|P13591-1|NCAM1	nc|ENSG00000149294|P13591-1|NCAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.2286071777344	2	456.227082	910.439611	4.2182	0.0019244	-0.5201	-0.00023728	3.6981	0.0016872	456.22690696136544	22.208	0.10429	22.208	22.176	22.281	0					5	3	2	0	0	0	0.60719	1	6509	6509		47.916	1.9636	1	86902			1482	4876	838	844	1494	1494					-0.019190847531831423
AFSLPALPL	9	Unmodified	_AFSLPALPL_					0	0	0		ENST00000482948.5_1_5:137536747-137548896:-|nuORF;CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant;ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-2|CDC23	ENST00000482948.5_1_5:137536747-137548896:-|nuORF	ENST00000482948.5_1_5:137536747-137548896:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7770690917969	2	464.778754	927.542954	-1.0986	-0.00051062	1.9961	0.00092774	0.89746	0.00041712	464.7791547928436	36.254	0.32446	36.254	36.13	36.455	0					13	9	3	0	0	0	0.32741	1	14088	14088		47.916	3.3845	1	621570			1483	434	839	845	1495	1495					0.07628447425270224
AFSLPSPTF	9	Unmodified	_AFSLPSPTF_					0	0	0		ENST00000588926.5_1_19:44617677-44619969:+|nuORF	ENST00000588926.5_1_19:44617677-44619969:+|nuORF	ENST00000588926.5_1_19:44617677-44619969:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.74798583984375	2	483.750193	965.485833	-0.59306	-0.00028689	-3.8939	-0.0018837	-4.487	-0.0021706	483.7483471187207	38.99	0.20414	38.99	38.937	39.141	0					5	4	2	0	0	0	0.26904	1	15386	15386		53.351	10.877	1	100650			1484	10928	840	846	1496	1496					0.0017098014889143087
AFSSLKCLG	9	Unmodified	_AFSSLKCLG_					0	0	0			REV__ENSG00000170128|ENST00000304244|GPR25	REV__ENSG00000170128|ENST00000304244|GPR25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2460021972656	2	463.244221	924.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.562	1	16.562	16.062	17.062	0								0	0	0	0.24724	1	4756	4756		44.117	3.5442	1		+		1485	16352	841	847	1497	1497					0.008630401340724347
AFTKLGEL	8	Unmodified	_AFTKLGEL_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.7523498535156	2	439.752736	877.490919	0.56601	0.00024891	-0.94003	-0.00041338	-0.37402	-0.00016448	439.7523927607442	36.38	0.18459	36.38	36.285	36.469	0					10	5	3	0	0	0	0.41701	1	13711	13711		68.787	2.9837	1	87461			1486	8036	842	848	1498	1498					0.04727284011528354
AFTSPYINN	9	Unmodified	_AFTSPYINN_					0	0	0		DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-3|DNAH6;ENST00000476689.5_1_2:84775422-84811380:+|nuORF;nc|ENSG00000115423|Q9C0G6-4|DNAH6;DNAH6|p.R2682Kfs*27|1|0.42|ENSG00000115423|chr2:84701316-84701317|-/A|frameshift_variant	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7489013671875	2	513.748182	1025.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.753	1	25.753	25.253	26.253	0								0	0	0	0.3304	1	8052	8052		29.15	2.4566	1				1487	819	843	849	1499	1499					-0.02991109344816323
AFTTYGLDLL	10	Unmodified	_AFTTYGLDLL_					0	0	0			REV__DNAH12|p.L560*|1|0.37|ENSG00000174844|chr3:57472643-57472643|A/-|frameshift_variant	REV__DNAH12|p.L560*|1|0.37|ENSG00000174844|chr3:57472643-57472643|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2969970703125	2	557.294965	1112.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.198	1	40.198	39.698	40.698	0								0	0	0	0.38797	1	13469	13469		34.173	1.3601	1		+		1488	12724	844	850	1500	1500					0.023591900376231933
AFVKENHR	8	Unmodified	_AFVKENHR_					0	0	0		ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8	ENST00000522773.5_1_19:48714969-48736545:-|nuORF	ENST00000522773.5_1_19:48714969-48736545:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.1832275390625	3	334.182281	999.525013	0.25344	8.4696E-05	2.5393	0.00084857	2.7927	0.00093327	334.1830784420668	20.885	0.40558	20.885	20.661	21.067	0					20	13	2	0	0	0	0.78146	1	5663	5663		25.45	8.0852	1	135300			1489	2362	845	851	1501	1501					0.025231252231378676
AFVMGLSVIGS	11	Oxidation (M)	_AFVM(Oxidation (M))GLSVIGS_		AFVM(1)GLSVIGS		AFVM(49)GLSVIGS	0	0	1		ENSG00000134640|ENST00000257068|MTNR1B	ENSG00000134640|ENST00000257068|MTNR1B	ENSG00000134640|ENST00000257068|MTNR1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7891845703125	2	548.788992	1095.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.771	1	33.771	33.271	34.271	0								0	0	0	0.31933	1	12871	12871		49.442	8.6634	1				1490	3932	846	852	1502	1502		162			0.019472500227720957
AFWWVAKM	8	Oxidation (M)	_AFWWVAKM(Oxidation (M))_		AFWWVAKM(1)		AFWWVAKM(95)	0	0	1			REV__TMEM200A|p.L97Cfs*29|1|0.17|ENSG00000164484|chr6:130440710-130440710|A/-|frameshift_variant	REV__TMEM200A|p.L97Cfs*29|1|0.17|ENSG00000164484|chr6:130440710-130440710|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7647094726562	2	527.762581	1053.51061	1.7522	0.00092473	0.34806	0.0001837	2.1002	0.0011084	527.7627342811215	38.985	0.42003	38.985	38.866	39.286	0					49	14	7	0	0	0	0.26119	1	15297	15297		95.378	13.137	1	2222600	+		1491	21653	847	853	1503	1503		786			-0.01400663249387435
AFWWVAKM	8	Oxidation (M)	_AFWWVAKM(Oxidation (M))_		AFWWVAKM(1)		AFWWVAKM(78)	0	0	1			REV__TMEM200A|p.L97Cfs*29|1|0.17|ENSG00000164484|chr6:130440710-130440710|A/-|frameshift_variant	REV__TMEM200A|p.L97Cfs*29|1|0.17|ENSG00000164484|chr6:130440710-130440710|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.76416015625	2	527.762581	1053.51061	3.4734	0.0018331	-0.45327	-0.00023922	3.0201	0.0015939	527.7623070364414	38.947	1.1335	38.947	38.51	39.643	0					25	9	4	0	0	0	0.34071	1	15347	15347		77.944	15.836	1	3079500	+		1492	21653	847	853	1504	1504		786			-0.01400663249387435
AFYHPPLLT	9	Unmodified	_AFYHPPLLT_					0	0	0			REV__ENST00000274458.8_1_5:115628182-115628326:+|nuORF	REV__ENST00000274458.8_1_5:115628182-115628326:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7874755859375	2	529.78711	1057.55967	0.023131	1.2255E-05	0.16983	8.9972E-05	0.19296	0.00010223	529.7874740061703	39.951	0.4855	39.951	39.78	40.265	0					47	27	2	0	0	0	0.45511	1	13468	13468		37.028	10.232	1	178810	+		1493	18114	848	854	1505	1505					0.03318948311220993
AFYVSNRKD	9	Unmodified	_AFYVSNRKD_					0	0	0		OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant	OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.27978515625	2	550.28018	1098.54581	1.2809	0.00070483	-0.8663	-0.00047671	0.41455	0.00022812	550.2796319598583	35.769	0.33604	35.769	35.645	35.981	0					40	16	3	0	0	0	0.50858	1	11773	11773		31.53	1.0262	1	471940			1494	1848	849	855	1506	1506					0.0004767081213685742
AGAAAMKGAQ	10	Unmodified	_AGAAAMKGAQ_					0	0	0			REV__ENST00000545932.5_1_12:108956374-108956593:+|nuORF	REV__ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.22357177734375	2	438.22382	874.433086	-0.3929	-0.00017218	-0.32547	-0.00014263	-0.71837	-0.00031481	438.2238143686806	18.318	0.52226	18.318	18.055	18.578	0					25	10	3	0	0	0	0.26673	1	5566	5566		71.296	2.5089	1	1809900	+		1495	20165	850	856	1507	1507					-0.009153011855460136
AGAAKWTGLF	10	Unmodified	_AGAAKWTGLF_					0	0	0		ENST00000301831.8_1_3:42003522-42003567:-|nuORF	ENST00000301831.8_1_3:42003522-42003567:-|nuORF	ENST00000301831.8_1_3:42003522-42003567:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.27496337890625	2	511.276909	1020.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.192	1	35.192	34.692	35.692	0								0	0	0	0.39244	1	11534	11534		32.812	2.3088	1				1496	8494	851	857	1508	1508					0.02981777651405082
AGAALTLGAR	10	Unmodified	_AGAALTLGAR_					0	0	0		ENST00000304031.7_1_2:20818438-20818750:-|nuORF	ENST00000304031.7_1_2:20818438-20818750:-|nuORF	ENST00000304031.7_1_2:20818438-20818750:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7665100097656	2	450.766709	899.518865	-0.16146	-7.2782E-05	-0.2173	-9.7951E-05	-0.37876	-0.00017073	450.7665304901783	17.743	0.23484	17.743	17.689	17.924	0					9	5	3	0	0	0	0.43008	1	4497	4497		52.937	1.6012	1	692900			1497	8508	852	858	1509	1509					0.06508606991610577
AGAAVLPVK	9	Unmodified	_AGAAVLPVK_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.2632751464844	2	413.263271	824.511988	0.61188	0.00025287	-0.54882	-0.00022681	0.063061	2.6061E-05	413.26306110083925	26.822	0.1407	26.822	26.719	26.86	0					11	5	3	0	0	0	0.077948	1	8203	8203		85.359	27.548	1	104780			1498	6723	853	859	1510	1510					0.09271294111044881
AGAAVLPVK	9	Unmodified	_AGAAVLPVK_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.26300048828125	2	413.263271	824.511988	0.55397	0.00022893	-0.85409	-0.00035297	-0.30013	-0.00012403	413.2628394573558	27.106	0.17534	27.106	27.021	27.196	0					6	4	2	0	0	0	0.032656	1	9439	9439		106.42	37.931	1	112960			1499	6723	853	859	1511	1511					0.09271294111044881
AGAAVLPVK	9	Unmodified	_AGAAVLPVK_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.26318359375	2	413.263271	824.511988	0.060844	2.5145E-05	-0.27215	-0.00011247	-0.21131	-8.7325E-05	413.2631906272391	27.08	0.30973	27.08	26.978	27.287	0					12	6	3	0	0	0	0.013544	1	9780	9780		133.47	42.692	1	364130			1500	6723	853	859	1512	1512					0.09271294111044881
AGAAVLPVK	9	Unmodified	_AGAAVLPVK_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.262451171875	2	413.263271	824.511988	0.10059	4.1569E-05	-0.37729	-0.00015592	-0.2767	-0.00011435	413.2631285037278	26.884	0.17579	26.884	26.788	26.964	0					6	4	2	0	0	0	0.043797	1	8714	8714		97.473	39.661	1	60142			1501	6723	853	859	1513	1513					0.09271294111044881
AGAAVLPVK	9	Unmodified	_AGAAVLPVK_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.2632751464844	2	413.263271	824.511988	-0.41193	-0.00017024	0.053678	2.2183E-05	-0.35825	-0.00014805	413.2632826309343	27.046	0.26851	27.046	26.902	27.17	0					13	5	4	0	0	0	0.021468	1	9626	9626		119.56	37.252	1	594230			1502	6723	853	859	1514	1514					0.09271294111044881
AGAFAQALKL	10	Unmodified	_AGAFAQALKL_					0	0	0		nc|ENSG00000215912|A8MYJ7|TTC34;ENSG00000215912|ENST00000401095|TTC34	nc|ENSG00000215912|A8MYJ7|TTC34	nc|ENSG00000215912|A8MYJ7|TTC34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.53082275390625	3	330.530798	988.570566	0.54482	0.00018008	-0.58192	-0.00019234	-0.037103	-1.2264E-05	330.5306136727008	20.905	0.41022	20.905	20.798	21.208	0					29	8	5	0	0	0	0.44469	1	6833	6833		46.457	2.0796	1	5621000			1503	7838	854	860	1515	1515					0.07582350685493111
AGAGCPVSK	9	Unmodified	_AGAGCPVSK_					0	0	0			REV__ENST00000244741.9_1_6:36646503-36651969:+|nuORF	REV__ENST00000244741.9_1_6:36646503-36651969:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.19964599609375	2	395.199813	788.385073	0.20348	8.0414E-05	-0.55399	-0.00021893	-0.35051	-0.00013852	395.1995950257628	16.212	0.18937	16.212	16.132	16.322	0					7	5	2	0	0	0	0.44593	1	3803	3803		37.812	2.6108	1	66779	+		1504	17938	855	861	1516	1516					-0.017583751056008623
AGAGTYLILH	10	Unmodified	_AGAGTYLILH_					0	0	0			REV__ACACA|p.L1885_T1886insY|1|0.11|ENSG00000278540|chr17:37149887-37149888|-/GTA|inframe_insertion	REV__ACACA|p.L1885_T1886insY|1|0.11|ENSG00000278540|chr17:37149887-37149888|-/GTA|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2812194824219	2	508.282192	1014.54983	-0.38964	-0.00019805	-0.11539	-5.8648E-05	-0.50502	-0.00025669	508.28202225747145	38.414	0.27391	38.414	38.293	38.567	0					21	9	3	0	0	0	0.28723	1	15038	15038		68.787	22.835	1	616340	+		1505	12048	856	862	1517	1517					0.04313760305853975
AGAHKRVVIQ	10	Unmodified	_AGAHKRVVIQ_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8294067382812	2	539.827632	1077.64071	3.4519	0.0018634	-0.018517	-9.9962E-06	3.4334	0.0018534	539.8277038701316	37.733	0.34754	37.733	37.627	37.974	0					17	7	3	0	0	0	0.58308	1	14808	14808		47.657	47.657	1	790450			1506	6243	857	863	1518	1518					0.10499649073994988
AGALAGGYAS	10	Unmodified	_AGALAGGYAS_					0	0	0			REV__ENST00000472734.1_1_1:211433019-211434404:+|nuORF	REV__ENST00000472734.1_1_1:211433019-211434404:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2104797363281	2	419.208692	836.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.083	1	15.083	14.583	15.583	0								0	0	0	0.20728	1	4053	4053		63.306	0.32785	1		+		1507	19496	858	864	1519	1519					-0.021913365790965145
AGALIGVLLG	10	Unmodified	_AGALIGVLLG_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2845764160156	2	442.284203	882.553853	-0.51481	-0.00022769	0.17053	7.5422E-05	-0.34428	-0.00015227	442.28424551092894	37.861	0.49054	37.861	37.565	38.055	0					18	10	2	0	0	0	0.59237	1	14735	14735		35.201	2.3883	1	107650			1508	1093	859	865	1520	1520					0.10787849799567084
AGALIGVLLG	10	Unmodified	_AGALIGVLLG_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2840270996094	2	442.284203	882.553853	0.74406	0.00032909	-0.6538	-0.00028917	0.090262	3.9922E-05	442.2838412294208	37.878	0.58873	37.878	37.45	38.039	0					31	12	3	0	0	0	0.50739	1	14775	14775		44.531	0.15388	1	274380			1509	1093	859	865	1521	1521					0.10787849799567084
AGALVGRHAR	10	Unmodified	_AGALVGRHAR_					0	0	0			REV__ENST00000602351.5_1_19:49645338-49651464:+|nuORF	REV__ENST00000602351.5_1_19:49645338-49651464:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.337	1	21.337	20.837	21.837	0								0	0	0	0.4201	1	6930	6930		12.812	0	1		+		1510	20605	860	866	1522	1522					0.0754192272564751
AGAMEQLR	8	Unmodified	_AGAMEQLR_					0	0	0			REV__GAPVD1|p.I676M|1|0.05|ENSG00000165219|chr9:125326585-125326585|T/G|missense_variant	REV__GAPVD1|p.I676M|1|0.05|ENSG00000165219|chr9:125326585-125326585|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.223388671875	2	438.22382	874.433086	0.010057	4.4071E-06	-0.54702	-0.00023972	-0.53697	-0.00023531	438.2236113595027	18.396	0.31912	18.396	18.182	18.501	0					19	7	3	0	0	0	0.44433	1	5304	5304		65.803	4.8312	1	741240	+		1511	20686	861	867	1523	1523					-0.009153011855460136
AGANRDSHR	9	Unmodified	_AGANRDSHR_					0	0	0		ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.4955749511719	3	328.497039	982.469289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.604	1	12.604	12.104	13.104	0								0	0	0	0.24544	1	2723	2723		44.377	16.296	1				1512	10526	862	868	1524	1524					-0.022647079644798396
AGAPLWDWSN	10	Unmodified	_AGAPLWDWSN_					0	0	0			REV__nc|ENSG00000138835|P49796-7|RGS3	REV__nc|ENSG00000138835|P49796-7|RGS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.759521484375	2	558.759081	1115.50361	-0.82182	-0.0004592	0.97899	0.00054702	0.15717	8.7821E-05	558.759516218523	12.48	0.058162	12.48	12.441	12.5	0					5	3	2	0	0	0	0.76713	1	2420	2420		9.7057	0.52274	1	48247	+		1513	21040	863	869	1525	1525					-0.0495230459623599
AGARGKRSRK	10	Unmodified	_AGARGKRSRK_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-3|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8926086425781	3	362.891612	1085.65301	0.73528	0.00026683	1.439	0.00052221	2.1743	0.00078903	362.89229405592533	14.738	0.13538	14.738	14.655	14.79	0					5	3	2	0	0	0	0.58189	1	3670	3670		36.447	3.6343	1	77907	+		1514	13879	864	870	1526	1526					0.11360685537010795
AGARLDVRD	9	Unmodified	_AGARLDVRD_					0	0	0		ENST00000380142.4_1_9:22005988-22008700:-|nuORF;nc|ENSG00000147889|P42771-2|CDKN2A;ENSG00000147883|ENST00000276925|CDKN2B;ENSG00000147889|ENST00000304494|CDKN2A;nc|ENSG00000147889|P42771-4|CDKN2A	ENST00000380142.4_1_9:22005988-22008700:-|nuORF	ENST00000380142.4_1_9:22005988-22008700:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7643127441406	2	486.764697	971.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.491	1	17.491	16.991	17.991	0								0	0	0	0.3368	1	4945	4945		27.882	1.0861	1				1515	4805	865	871	1527	1527					0.027945174978981413
AGASFGSRSL	10	Unmodified	_AGASFGSRSL_					0	0	0		CON__O95678;ENSG00000170454|ENST00000252245|KRT75;KRT75|p.L391Ffs*7|1|0.2|ENSG00000170454|chr12:52428465-52428466|-/A|frameshift_variant	CON__O95678	CON__O95678	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.74371337890625	2	476.745973	951.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.585	1	16.585	16.085	17.085	0								0	0	0	0.40063	1	4768	4768		30.318	2.0634	1			+	1516	628	866	872	1528	1528					-0.0002857376771316922
AGASRWAR	8	Unmodified	_AGASRWAR_					0	0	0		ENST00000380794.5_1_2:25384284-25384404:-|nuORF	ENST00000380794.5_1_2:25384284-25384404:-|nuORF	ENST00000380794.5_1_2:25384284-25384404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7349853515625	2	437.735743	873.456933	-0.94145	-0.00041211	-0.73029	-0.00031968	-1.6717	-0.00073178	437.7353979449666	18.703	0.17649	18.703	18.626	18.802	0					12	6	2	0	0	0	0.65276	1	4922	4922		40.573	1.3198	1	130640			1517	9103	867	873	1529	1529					0.015143003631351348
AGATKMVPTW	10	Unmodified	_AGATKMVPTW_					0	0	0		ENST00000245543.5_1_17:73125996-73126314:+|nuORF	ENST00000245543.5_1_17:73125996-73126314:+|nuORF	ENST00000245543.5_1_17:73125996-73126314:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2782592773438	2	531.276052	1060.53755	3.4239	0.001819	0.57812	0.00030714	4.002	0.0021262	531.2763857245945	16.474	0.21622	16.474	16.418	16.634	0					9	4	4	0	0	0	0.063601	1	4577	4577		104.75	104.75	1	2160700			1518	8225	868	874	1530	1530					0.00970400571168284
AGATNKLVV	9	Unmodified	_AGATNKLVV_					0	0	0			REV__HIPK3|p.C434Afs*13|1|0.33|ENSG00000110422|chr11:33337147-33337147|T/-|frameshift_variant	REV__HIPK3|p.C434Afs*13|1|0.33|ENSG00000110422|chr11:33337147-33337147|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7638244628906	2	436.763635	871.512717	-0.4153	-0.00018139	0.51526	0.00022505	0.099959	4.3659E-05	436.7639836449432	14.616	0.15521	14.616	14.508	14.663	0					5	3	2	0	0	0	0.42902	1	3839	3839		39.253	0	1	72315	+		1519	13933	869	875	1531	1531					0.071820887600893
AGAVLEIICPL	11	Unmodified	_AGAVLEIICPL_					0	0	0		ENST00000531440.5_1_8:42744549-42751720:-|nuORF;ENST00000534961.5_1_8:42751546-42751720:-|nuORF;ENST00000527424.5_1_8:42742976-42751768:-|nuORF	ENST00000531440.5_1_8:42744549-42751720:-|nuORF	ENST00000531440.5_1_8:42744549-42751720:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8140869140625	2	549.81501	1097.61547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.513	1	14.513	14.013	15.013	0								0	0	0	0.24969	1	3627	3627		49.442	8.6634	1				1520	10393	870	876	1532	1532					0.07056413436544062
AGAVLRPTAK	10	Unmodified	_AGAVLRPTAK_					0	0	0		ENST00000452859.6_1_17:46184937-46190729:+|nuORF	ENST00000452859.6_1_17:46184937-46190729:+|nuORF	ENST00000452859.6_1_17:46184937-46190729:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.5378723144531	3	328.538064	982.592364	0.52788	0.00017343	-0.79965	-0.00026272	-0.27178	-8.9289E-05	328.5378060948844	11.49	0.11301	11.49	11.436	11.549	0					10	4	3	0	0	0	0.62235	1	2219	2219		36.318	0	1	355010			1521	9662	871	877	1533	1533					0.10037155434076794
AGAWGIFLAAG	11	Unmodified	_AGAWGIFLAAG_					0	0	0			REV__nc|ENSG00000134873|P78369-3|CLDN10	REV__nc|ENSG00000134873|P78369-3|CLDN10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.276611328125	2	517.276909	1032.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.047	1	15.047	14.547	15.547	0								0	0	0	0.38303	1	3881	3881		40.573	1.7665	1		+		1522	14767	872	878	1534	1534					0.024297776514004
AGAYGNFPTLQ	11	Unmodified	_AGAYGNFPTLQ_					0	0	0			REV__nc|ENSG00000140284|O14975-2|SLC27A2	REV__nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	380.1893005371094	3	380.189101	1137.54547	0.52494	0.00019958	0.90332	0.00034343	1.4283	0.00054301	380.52403770681406	20.436	0.11983	20.436	20.381	20.5	0					6	4	2	0	0	0	0.7098	1	5491	5491		23.378	0	1	55955	+		1523	15067	873	879	1535	1535					-0.017797489077111095
AGCGKTYTK	9	Carbamidomethyl (C)	_AGC(Carbamidomethyl (C))GKTYTK_	AGC(1)GKTYTK		AGC(180)GKTYTK		0	1	0		ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	ENSG00000127528|ENST00000248071|KLF2;KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.24188232421875	2	493.242209	984.469866	0.62541	0.00030848	-1.3153	-0.00064877	-0.68991	-0.00034029	493.2417144083405	12.674	0.22646	12.674	12.588	12.815	0					11	5	4	0	0	0	0.0011548	1	2900	2900		181.41	82.778	1	914300			1524	3510;4113	874	880	1536	1536	147				-0.022990493596466877
AGCGKTYTK	9	Carbamidomethyl (C)	_AGC(Carbamidomethyl (C))GKTYTK_	AGC(1)GKTYTK		AGC(120)GKTYTK		0	1	0		ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	ENSG00000127528|ENST00000248071|KLF2;KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.24200439453125	2	493.242209	984.469866	0.86719	0.00042774	-1.429	-0.00070483	-0.56178	-0.00027709	493.2416886484245	12.652	0.089555	12.652	12.571	12.66	0					6	2	3	0	0	0	0.021015	1	2738	2738		120.31	42.988	1	453470			1525	3510;4113	874	880	1537	1537	147				-0.022990493596466877
AGCLLRGDG	9	Unmodified	_AGCLLRGDG_					0	0	0			REV__ENSG00000164099|ENST00000296498|PRSS12	REV__ENSG00000164099|ENST00000296498|PRSS12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.21624755859375	2	431.215995	860.417436	-0.37154	-0.00016021	0.031535	1.3598E-05	-0.34001	-0.00014662	431.21604161424443	17.647	0.13793	17.647	17.568	17.706	0					6	3	2	0	0	0	0.30951	1	4456	4456		49.442	1.5259	1	104540	+		1526	15963	875	881	1538	1538					-0.018355877026010603
AGCPPGPRP	9	Unmodified	_AGCPPGPRP_					0	0	0		ENST00000530490.1_1_11:17035717-17073753:+|nuORF	ENST00000530490.1_1_11:17035717-17073753:+|nuORF	ENST00000530490.1_1_11:17035717-17073753:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.214599609375	2	426.213255	850.411957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.445	1	49.445	48.945	49.945	0								0	0	0	0.34228	1	19553	19553		26.796	3.7594	1				1527	10425	876	882	1539	1539					-0.019232664944183853
AGCRFDKIKA	10	Carbamidomethyl (C)	_AGC(Carbamidomethyl (C))RFDKIKA_	AGC(1)RFDKIKA		AGC(100)RFDKIKA		0	1	0		ENST00000354910.9_1_3:134201706-134204867:-|nuORF	ENST00000354910.9_1_3:134201706-134204867:-|nuORF	ENST00000354910.9_1_3:134201706-134204867:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.3126220703125	2	583.310958	1164.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.583	1	12.583	12.083	13.083	0								0	0	0	0.011307	1	2679	2679		101.25	29.157	1				1528	8789	877	883	1540	1540	377				0.03164279239763346
AGCRFDKIKA	10	Carbamidomethyl (C)	_AGC(Carbamidomethyl (C))RFDKIKA_	AGC(1)RFDKIKA		AGC(73)RFDKIKA		0	1	0		ENST00000354910.9_1_3:134201706-134204867:-|nuORF	ENST00000354910.9_1_3:134201706-134204867:-|nuORF	ENST00000354910.9_1_3:134201706-134204867:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.3126831054688	2	583.310958	1164.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.584	1	12.584	12.084	13.084	0								0	0	0	0.1345	1	2712	2712		72.879	8.672	1				1529	8789	877	883	1541	1541	377				0.03164279239763346
AGDCARHQRE	10	Carbamidomethyl (C)	_AGDC(Carbamidomethyl (C))ARHQRE_	AGDC(1)ARHQRE		AGDC(80)ARHQRE		0	1	0		ENST00000428275.1_1_X:53172386-53172590:-|nuORF	ENST00000428275.1_1_X:53172386-53172590:-|nuORF	ENST00000428275.1_1_X:53172386-53172590:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.2733154296875	2	600.270352	1198.52615	-0.15467	-9.2844E-05	4.4351	0.0026623	4.2805	0.0025694	600.2735494390614	13.376	0.16318	13.376	13.254	13.417	0					10	4	4	0	0	0	0.19797	1	3037	3037		79.713	10.085	1	427870			1530	9463	878	884	1542	1542	391				-0.06517028470284458
AGDCARHQRE	10	Carbamidomethyl (C)	_AGDC(Carbamidomethyl (C))ARHQRE_	AGDC(1)ARHQRE		AGDC(80)ARHQRE		0	1	0		ENST00000428275.1_1_X:53172386-53172590:-|nuORF	ENST00000428275.1_1_X:53172386-53172590:-|nuORF	ENST00000428275.1_1_X:53172386-53172590:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2734985351562	2	600.270352	1198.52615	3.1207	0.0018732	1.9435	0.0011666	5.0641	0.0030398	600.2716421853577	13.374	0.19267	13.374	13.275	13.467	0					9	4	3	0	0	0	0.19797	1	3096	3096		79.713	12.219	1	1017900			1531	9463	878	884	1543	1543	391				-0.06517028470284458
AGDGLIELRK	10	Unmodified	_AGDGLIELRK_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.3115844726562	2	536.31148	1070.60841	2.1713	0.0011645	-1.4715	-0.00078916	0.69983	0.00037533	536.3105651092088	30.361	0.23161	30.361	30.262	30.494	0					10	5	3	0	0	0	0.073361	1	10315	10315		101.46	8.3166	1	337610			1532	5966	879	885	1544	1544					0.07592816880310238
AGDGLIELRK	10	Unmodified	_AGDGLIELRK_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3118896484375	2	536.31148	1070.60841	0.70209	0.00037654	-0.11491	-6.1628E-05	0.58718	0.00031491	536.3114786700156	30.537	0.50498	30.537	30.393	30.898	0					20	10	3	0	0	0	0.0098546	1	11307	11307		143.37	19.294	1	2359300			1533	5966	879	885	1545	1545					0.07592816880310238
AGEESRPAI	9	Unmodified	_AGEESRPAI_					0	0	0			REV__ENSG00000176182|ENST00000322217|MYPOP	REV__ENSG00000176182|ENST00000322217|MYPOP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.23779296875	2	465.237981	928.461409	-0.43959	-0.00020452	-0.71635	-0.00033327	-1.1559	-0.00053779	465.23776473156664	23.219	0.16281	23.219	23.135	23.298	0					6	4	2	0	0	0	0.39215	1	6694	6694		42.396	3.1433	1	37988	+		1534	16646	880	886	1546	1546					-0.005682800046201919
AGEPPRPK	8	Unmodified	_AGEPPRPK_					0	0	0		ENST00000566159.1_1_16:1364579-1364975:+|nuORF	ENST00000566159.1_1_16:1364579-1364975:+|nuORF	ENST00000566159.1_1_16:1364579-1364975:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.24005126953125	2	426.240327	850.466101	1.0534	0.00044902	-1.3538	-0.00057706	-0.3004	-0.00012804	426.2397325650885	18.167	0.21105	18.167	18.06	18.271	0					8	4	3	0	0	0	0.67475	1	5397	5397		37.028	3.5129	1	806430			1535	10759	881	887	1547	1547					0.0348864892880556
AGEVGWGILL	10	Unmodified	_AGEVGWGILL_					0	0	0			REV__ENST00000416671.5_1_22:29137938-29138193:-|nuORF	REV__ENST00000416671.5_1_22:29137938-29138193:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.784912109375	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.556	1	25.556	25.056	26.056	0								0	0	0	0.37276	1	7963	7963		38.806	3.1879	1		+		1536	19035	882	888	1548	1548					0.048346444486242035
AGFAALQLK	9	Unmodified	_AGFAALQLK_					0	0	0		ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENST00000396387.2_1_22:42503789-42504386:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7734680175781	2	459.774003	917.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.701	1	20.701	20.201	21.201	0								0	0	0	0.31623	1	5825	5825		31.955	0.42505	1				1537	9205	883	889	1549	1549					0.07138679139757187
AGFDATNILNK	11	Unmodified	_AGFDATNILNK_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.3058471679688	2	582.306395	1162.59824	-0.010272	-5.9813E-06	0.094109	5.48E-05	0.083837	4.8819E-05	582.30603809076	39.984	0.07991	39.984	39.932	40.012	0					5	3	2	0	0	0	0.20102	1	15241	15241		74.165	1.2858	1	70947			1538	4007	884	890	1550	1550					0.023442091550805344
AGFDSIFKK	9	Unmodified	_AGFDSIFKK_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.1869201660156	3	338.18692	1011.53893	1.5866	0.00053658	-1.4467	-0.00048925	0.13993	4.7324E-05	338.1862663494278	35.935	0.4159	35.935	35.817	36.233	0					17	8	4	0	0	0	0.51817	1	13951	13951		54.776	26.894	1	257780			1539	7027	885	891	1551	1551					0.033623579315758434
AGFELLLQK	9	Unmodified	_AGFELLLQK_					0	0	0		nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7	nc|ENSG00000007237|O60861-2|GAS7	nc|ENSG00000007237|O60861-2|GAS7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.2010803222656	3	340.20257	1017.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.525	1	12.525	12.025	13.025	0								0	0	0	0.35737	1	2486	2486		23.523	3.5259	1				1540	1000	886	892	1552	1552					0.07779217482720924
AGFHLNPKAIE	11	Unmodified	_AGFHLNPKAIE_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.5533447265625	3	399.552262	1195.63496	0.42218	0.00016868	2.0433	0.00081639	2.4654	0.00098507	399.55328468564517	12.921	0.15538	12.921	12.822	12.978	0					5	3	2	0	0	0	0.79869	1	2885	2885		15.333	0.46824	1	127330			1541	5894	887	893	1553	1553					0.044965057716581214
AGFKSYCME	9	Unmodified	_AGFKSYCME_					0	0	0			REV__ENST00000443260.1_1_X:144712299-144712695:+|nuORF	REV__ENST00000443260.1_1_X:144712299-144712695:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2171020507812	2	518.217346	1034.42014	-0.3796	-0.00019671	1.48	0.00076694	1.1004	0.00057022	518.7199543050745	11.98	0.77531	11.98	11.813	12.588	0					56	20	4	0	0	0	0.4966	1	2565	2565		32.812	2.3088	1	1794000	+		1542	19263	888	894	1554	1554					-0.09569500359975791
AGFRALAQ	8	Unmodified	_AGFRALAQ_					0	0	0		nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS;nc|ENSG00000254827|Q8N1D0|SLC22A18AS	nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS	nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.234619140625	2	417.235045	832.455536	0.95352	0.00039784	-1.6462	-0.00068687	-0.69273	-0.00028903	417.23425443847935	16.721	0.15418	16.721	16.664	16.818	0					6	3	2	0	0	0	0.68754	1	4849	4849		35.201	4.6971	1	975250			1543	11792	889	895	1555	1555					0.032606662743773995
AGGAAKKPK	9	Unmodified	_AGGAAKKPK_					0	0	0			REV__ENSG00000187837|ENST00000343677|H1-2	REV__ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.25830078125	2	414.25852	826.502486	-0.1626	-6.7357E-05	-0.18026	-7.4675E-05	-0.34286	-0.00014203	414.2584339081619	15.24	0.14602	15.24	15.161	15.307	0					9	4	3	0	0	0	0.043797	1	3285	3285		97.473	5.2821	1	509990	+		1544	17144	890	896	1556	1556					0.08229525825515793
AGGAPRVP	8	Unmodified	_AGGAPRVP_					0	0	0		ENST00000589764.1_1_18:12068096-12068183:-|nuORF	ENST00000589764.1_1_18:12068096-12068183:-|nuORF	ENST00000589764.1_1_18:12068096-12068183:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.7086486816406	2	362.708663	723.402772	0.47889	0.0001737	-0.30419	-0.00011033	0.1747	6.3366E-05	362.7085212628797	19.608	0.23822	19.608	19.508	19.746	0					9	5	2	0	0	0	0.55361	1	5958	5958		54.765	0	1	1148800			1545	10938	891	897	1557	1557					0.030007082115730555
AGGASGSRAKR	11	Unmodified	_AGGASGSRAKR_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2820739746094	2	509.281046	1016.54754	1.1682	0.00059493	0.86535	0.00044071	2.0335	0.0010356	509.2814507380454	25.877	0.69131	25.877	25.392	26.084	0					25	12	4	0	0	0	0.1937	1	9204	9204		75.043	75.043	1	4574600			1546	2369	892	898	1558	1558					0.03992724620752597
AGGCRMRLF	9	Carbamidomethyl (C),Oxidation (M)	_AGGC(Carbamidomethyl (C))RM(Oxidation (M))RLF_	AGGC(1)RMRLF	AGGCRM(1)RLF	AGGC(50)RMRLF	AGGCRM(50)RLF	0	1	1			REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF	REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2635498046875	2	542.262953	1082.51135	0.31664	0.0001717	0.72068	0.0003908	1.0373	0.0005625	542.2636388854795	17.879	0.22046	17.879	17.718	17.939	0					13	4	4	0	0	0	0.30268	1	5375	5375		50.025	12.865	1	980680	+		1547	20010	893	899	1559	1559	704	729			-0.026601918719734385
AGGGGLLV	8	Unmodified	_AGGGGLLV_					0	0	0		ENSG00000149489|ENST00000278833|ROM1	ENSG00000149489|ENST00000278833|ROM1	ENSG00000149489|ENST00000278833|ROM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.1935119628906	2	322.192314	642.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.355	1	32.355	31.855	32.855	0								0	0	0	1.7419	1	11870	11870		33.493	8.989	1				1548	4889	894	900	1560	1560					0.034585010887212775
AGGGKKGG	8	Unmodified	_AGGGKKGG_					0	0	0		ENSG00000109061|ENST00000226207|MYH1;MYH1|p.N889Mfs*24|1|0.19|ENSG00000109061|chr17:10504835-10504835|T/-|frameshift_variant	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	316.180419921875	2	316.179738	630.344923	2.9935	0.00094649	-0.52821	-0.00016701	2.4653	0.00077948	316.1794014927288	42.062	0.20158	42.062	41.969	42.17	0					7	5	2	0	0	0	0.7914	1	16770	16770		14.664	5.1935	1	129510			1549	2562	895	901	1561	1561					0.014964462861485117
AGGKGKSA	8	Unmodified	_AGGKGKSA_					0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.19342041015625	2	338.192845	674.371138	3.0175	0.0010205	-1.0438	-0.00035302	1.9736	0.00066747	338.1923942687579	43.622	1.1291	43.622	43.485	44.614	0					73	41	4	0	0	0	0.78216	1	17431	17431		8.8223	1.132	1	4557600	+		1550	14329	896	902	1562	1562					0.020927154576042994
AGGKVVSK	8	Unmodified	_AGGKVVSK_					0	0	0			REV__ENSG00000130396|ENST00000683244|AFDN	REV__ENSG00000130396|ENST00000683244|AFDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.23175048828125	2	373.231971	744.449388	-2.1073	-0.00078651	1.5337	0.00057244	-0.57355	-0.00021407	373.23250565345916	17.164	0.092419	17.164	17.097	17.189	0					6	3	2	0	0	0	0.54629	1	4209	4209		55.504	2.1528	1	214330	+		1551	14578	897	903	1563	1563					0.06694148042856796
AGGKVVSKVY	10	Unmodified	_AGGKVVSKVY_					0	0	0			REV__ENSG00000130396|ENST00000683244|AFDN	REV__ENSG00000130396|ENST00000683244|AFDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2973937988281	2	504.297842	1006.58113	0.77352	0.00039008	-0.55767	-0.00028123	0.21584	0.00010885	504.297400222044	24.179	1.223	24.179	23.486	24.709	0					67	28	3	0	0	0	0.49411	1	7981	7981		45.972	5.1941	1	1451800	+		1552	14578	898	904	1564	1564					0.07810333339944009
AGGLPMWER	9	Unmodified	_AGGLPMWER_					0	0	0		VIPR2|p.K48Nfs*42|1|0.39|ENSG00000106018|chr7:159142453-159142453|T/-|frameshift_variant	VIPR2|p.K48Nfs*42|1|0.39|ENSG00000106018|chr7:159142453-159142453|T/-|frameshift_variant	VIPR2|p.K48Nfs*42|1|0.39|ENSG00000106018|chr7:159142453-159142453|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7513427734375	2	508.752744	1015.49094	-1.8756	-0.00095424	-1.8928	-0.00096295	-3.7684	-0.0019172	508.7519670880852	12.185	0.17206	12.185	12.131	12.304	0					17	10	3	0	0	0	0.22377	1	2345	2345		42.474	0	1	464660			1553	23103	899	905	1565	1565					-0.016190392601288295
AGGLPNVK	8	Unmodified	_AGGLPNVK_					0	0	0			REV__ENST00000469559.5_1_3:38167054-38167382:-|nuORF	REV__ENST00000469559.5_1_3:38167054-38167382:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	378.22406005859375	2	378.224146	754.433738	-2.1344	-0.0008073	1.7435	0.00065943	-0.39096	-0.00014787	378.2247689516795	22.37	0.1946	22.37	22.276	22.471	0					6	4	2	0	0	0	0.68754	1	6661	6661		35.201	1.0282	1	133120	+		1554	13084	900	906	1566	1566					0.046698615258037535
AGGNLAAAL	9	Unmodified	_AGGNLAAAL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.2137145996094	2	379.213778	756.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.809	1	19.809	19.309	20.309	0								0	0	0	0.14807	1	5452	5452		60.294	2.8413	1				1555	4651	901	907	1567	1567					0.025052711461171384
AGGPGKPGG	9	Unmodified	_AGGPGKPGG_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000487016.1_1_3:4774792-4777134:+|nuORF	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.1844482421875	2	349.18502	696.355488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.351	1	45.351	44.851	45.851	0								0	0	0	0.34228	1	15452	15452		26.796	3.7594	1				1556	4941	902	908	1568	1568					-0.004835710594193188
AGGRLRSTTGA	11	Unmodified	_AGGRLRSTTGA_					0	0	0		ENST00000498461.1_1_10:45938876-45939636:+|nuORF	ENST00000498461.1_1_10:45938876-45939636:+|nuORF	ENST00000498461.1_1_10:45938876-45939636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.790771484375	2	523.788704	1045.56285	3.4221	0.0017925	0.5694	0.00029825	3.9915	0.0020907	523.7889797537017	17.809	0.30992	17.809	17.7	18.01	0					13	6	3	0	0	0	0.37395	1	5216	5216		45.022	45.022	1	2503800			1557	10137	903	909	1569	1569					0.04189591417934935
AGGTFALK	8	Unmodified	_AGGTFALK_					0	0	0		ENST00000318037.3_1_3:196230167-196230401:-|nuORF	ENST00000318037.3_1_3:196230167-196230401:-|nuORF	ENST00000318037.3_1_3:196230167-196230401:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	382.71875	2	382.718696	763.422839	-1.1479	-0.00043932	1.1981	0.00045852	0.05016	1.9197E-05	382.7191205519909	22.708	0.22368	22.708	22.63	22.854	0					13	8	3	0	0	0	0.44433	1	6723	6723		65.803	4.8312	1	236130			1558	8589	904	910	1570	1570					0.031664591515209395
AGHASRPSSL	10	Unmodified	_AGHASRPSSL_					0	0	0			REV__nc|ENSG00000119866|Q9H165-3|BCL11A	REV__nc|ENSG00000119866|Q9H165-3|BCL11A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.7532653808594	2	491.756872	981.499192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.006	1	31.006	30.506	31.506	0								0	0	0	0.28704	1	10237	10237		52.937	1.6012	1		+		1559	12279	905	911	1571	1571					0.007702309808450991
AGHGRLSK	8	Unmodified	_AGHGRLSK_					0	0	0		ENST00000216181.9_1_22:36745290-36784030:-|nuORF	ENST00000216181.9_1_22:36745290-36784030:-|nuORF	ENST00000216181.9_1_22:36745290-36784030:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2380676269531	2	413.238119	824.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.721	1	52.721	52.221	53.221	0								0	0	0	1.7419	1	18662	18662		16.473	1.809	1				1560	8162	906	912	1572	1572					0.04243184505901354
AGHLGPASR	9	Unmodified	_AGHLGPASR_					0	0	0			REV__ENST00000484382.5_1_2:101014515-101023152:-|nuORF	REV__ENST00000484382.5_1_2:101014515-101023152:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.2343444824219	2	433.235576	864.456599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.627	1	21.627	21.127	22.127	0								0	0	0	0.20652	1	6239	6239		50.025	0.58299	1		+		1561	19634	907	913	1573	1573					0.018948806432717902
AGIALHSLSTV	11	Unmodified	_AGIALHSLSTV_					0	0	0			REV__SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	REV__SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8082275390625	2	534.806031	1067.59751	3.3732	0.001804	0.83639	0.00044731	4.2096	0.0022513	534.8063639542524	38.064	0.47303	38.064	37.92	38.393	0					27	10	3	0	0	0	0.5473	1	14921	14921		40.778	1.972	1	2529800	+		1562	17112	908	914	1574	1574					0.06641414506043475
AGIASSSIAAK	11	Unmodified	_AGIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2767333984375	2	488.277106	974.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.314	1	23.314	22.814	23.814	0								0	0	0	0.41424	1	6729	6729		33.922	12.219	1				1563	5846	909	915	1575	1575					0.05137152580618931
AGIGARSSVEK	11	Unmodified	_AGIGARSSVEK_					0	0	0			REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.801025390625	2	537.798737	1073.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.883	1	15.883	15.383	16.383	0								0	0	0	0.064391	1	4195	4195		83.647	6.8729	1		+		1564	18367	910	916	1576	1576					0.04907342357910238
AGIGARSSVEK	11	Unmodified	_AGIGARSSVEK_					0	0	0			REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.86968994140625	3	358.86825	1073.58292	3.0886	0.0011084	0.49616	0.00017805	3.5848	0.0012865	358.86848273670114	15.823	0.21632	15.823	15.763	15.98	0					6	4	2	0	0	0	0.27467	1	4265	4265		92.239	6.3771	1	1656100	+		1565	18367	910	916	1577	1577					0.04907342357910238
AGIIGVNRK	9	Unmodified	_AGIIGVNRK_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2897033691406	2	464.290351	926.566149	-0.44122	-0.00020485	-0.34286	-0.00015919	-0.78408	-0.00036404	464.2901920139051	22.431	0.085835	22.431	22.384	22.47	0					4	2	2	0	0	0	0.037966	1	6347	6347		101.21	9.0209	1	177310			1566	4438;562	911	917	1578	1578					0.09992886262602951
AGILCMLILI	10	Oxidation (M)	_AGILCM(Oxidation (M))LILI_		AGILCM(1)LILI		AGILCM(66)LILI	0	0	1			REV__nc|ENSG00000118322|O94823-3|ATP10B	REV__nc|ENSG00000118322|O94823-3|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.8119506835938	2	538.316331	1074.61811	2.0401	0.0010982	-2.3379	-0.0012585	-0.29782	-0.00016032	538.3148796724648	27.263	0.50921	27.263	27.127	27.636	0					27	12	4	0	0	0	0.3122	1	9528	9528		65.897	7.1155	1	991780	+		1567	14218	912	918	1579	1579		542			0.08378545569848939
AGIPGVPGAGA	11	Unmodified	_AGIPGVPGAGA_					0	0	0		TCF7|p.L162Tfs*36|1|0.17|ENSG00000081059|chr5:134138095-134138098|CTCT/-|frameshift_variant;TCF7|p.S135Rfs*64|3|0.16|ENSG00000081059|chr5:134115989-134115989|C/-|frameshift_variant;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000081059|P36402-7|TCF7;nc|ENSG00000081059|P36402|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	TCF7|p.L162Tfs*36|1|0.17|ENSG00000081059|chr5:134138095-134138098|CTCT/-|frameshift_variant	TCF7|p.L162Tfs*36|1|0.17|ENSG00000081059|chr5:134138095-134138098|CTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.73907470703125	2	433.74016	865.465767	0.90652	0.00039319	-4.147	-0.0017987	-3.2405	-0.0014055	433.7382837869689	11.429	0.14231	11.429	11.336	11.478	0					7	4	2	0	0	0	0.42078	1	2332	2332		50.025	4.0726	1	85348			1568	1654	913	919	1580	1580					0.027652292089555885
AGIRVNIESA	10	Unmodified	_AGIRVNIESA_					0	0	0			REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2883911132812	2	515.288005	1028.56146	1.1941	0.00061532	2.3317	0.0012015	3.5258	0.0018168	515.2877033967045	18.9	0.22875	18.9	18.865	19.094	0					10	6	2	0	0	0	0.52707	1	5616	5616		42.396	2.338	1	503190	+		1569	22038	914	920	1581	1581					0.04831957329179204
AGISFSVKK	9	Unmodified	_AGISFSVKK_					0	0	0		nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1;MLH1|p.Q197Tfs*7|1|0.48|ENSG00000076242|chr3:37011856-37011857|-/A|frameshift_variant;MLH1|p.N287Tfs*10|1|0.36|ENSG00000076242|chr3:37017571-37017571|A/-|frameshift_variant	nc|ENSG00000076242|P40692-3|MLH1	nc|ENSG00000076242|P40692-3|MLH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7792053222656	2	468.779285	935.544017	0.62996	0.00029531	2.784	0.0013051	3.414	0.0016004	468.7805123715964	26.383	0.51057	26.383	26.217	26.727	0					17	10	2	0	0	0	0.085655	1	9466	9466		82.75	8.4954	1	570160			1570	1557	915	921	1582	1582					0.07366661794185347
AGITGTNVVK	10	Unmodified	_AGITGTNVVK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2796325683594	2	480.279649	958.544745	-0.18214	-8.7477E-05	0.13701	6.5805E-05	-0.045124	-2.1672E-05	480.27965081904676	24.9	0.20461	24.9	24.814	25.019	0					10	5	3	0	0	0	0.049666	1	8451	8451		109.44	13.624	1	510300			1571	1085	916	922	1583	1583					0.06381456443239131
AGKKPVVGK	9	Unmodified	_AGKKPVVGK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.2897033691406	2	442.28982	882.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.741	1	12.741	12.241	13.241	0								0	0	0	0.29774	1	2941	2941		35.618	5.1146	1				1572	6489	917	923	1584	1584					0.11910671893713243
AGKLVFPYI	9	Unmodified	_AGKLVFPYI_					0	0	0			REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.8684997558594	3	336.535661	1006.58515	-1.9121	-0.00064349	-2.6549	-0.00089345	-4.567	-0.0015369	336.53483331832877	27.263	0.57206	27.263	26.964	27.536	0					23	14	2	0	0	0	0.60749	1	8825	8825		20.947	2.6848	1	110870	+		1573	21974	918	924	1585	1585					0.08212422833662458
AGKNLGTTKK	10	Unmodified	_AGKNLGTTKK_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.3065490722656	2	509.306198	1016.59784	0.93066	0.00047399	-0.51896	-0.00026431	0.4117	0.00020968	509.30594475162326	15.9	0.17374	15.9	15.775	15.949	0					7	4	2	0	0	0	0.44601	1	4213	4213		51.193	1.7511	1	351320			1574	1168	919	925	1586	1586					0.09020834225896124
AGKRDGLKMAA	11	Unmodified	_AGKRDGLKMAA_					0	0	0		ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20977783203125	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.89	1	51.89	51.39	52.39	0								0	0	0	0.45674	1	20236	20236		22.562	0.87584	1				1575	8546	920	926	1587	1587					0.053722792398048114
AGKRFAMG	8	Unmodified	_AGKRFAMG_					0	0	0			REV__ENST00000432615.5_1_7:158494977-158496347:-|nuORF	REV__ENST00000432615.5_1_7:158494977-158496347:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.2234191894531	2	419.223623	836.432692	1.0703	0.00044869	-1.4184	-0.00059465	-0.34816	-0.00014596	419.2229345346948	24.316	0.28263	24.316	24.22	24.502	0					10	6	2	0	0	0	0.68754	1	8184	8184		35.201	5.3592	1	288830	+		1576	19178	921	927	1588	1588					0.007933238852615432
AGKSTFLKK	9	Unmodified	_AGKSTFLKK_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;ENST00000601816.3_1_19:50365027-50365457:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2990417480469	2	490.300384	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.867	1	13.867	13.367	14.367	0								0	0	0	0.23111	1	3474	3474		31.53	0	1				1577	1189	922	928	1589	1589					0.09606637202557522
AGKTNIIGA	9	Unmodified	_AGKTNIIGA_					0	0	0		tr|U7T498|U7T498_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00307PE=4SV=1	tr|U7T498|U7T498_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00307PE=4SV=1	tr|U7T498|U7T498_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00307PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.74774169921875	2	422.747985	843.481417	-0.85655	-0.0003621	0.51953	0.00021963	-0.33701	-0.00014247	422.7481361417963	23.158	0.18665	23.158	23.035	23.222	0					9	4	3	0	0	0	0.25716	1	7623	7623		54.776	1.4249	1	406390			1578	22987	923	929	1590	1590					0.053415157259905754
AGKTTFAAKL	10	Unmodified	_AGKTTFAAKL_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5345458984375	3	336.53432	1006.58113	0.24126	8.1192E-05	-0.15007	-5.0503E-05	0.091189	3.0688E-05	336.5341983043867	41.786	0.50039	41.786	41.55	42.051	0					46	31	2	0	0	0	0.73697	1	13327	13327		15.333	3.1263	1	71678			1579	23056	924	930	1591	1591					0.0781033333993264
AGKVRGQTPK	10	Unmodified	_AGKVRGQTPK_					0	0	0		ENSG00000149806|ENST00000529639|FAU;ENST00000531357.1_1_11:64888296-64888581:-|nuORF	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.31298828125	2	521.311815	1040.60908	1.5187	0.00079172	-0.16506	-8.6047E-05	1.3537	0.00070567	521.3117665820325	12.414	0.27796	12.414	12.271	12.549	0					21	9	3	0	0	0	0.041183	1	2568	2568		112.41	32.96	1	399330			1580	4908	925	931	1592	1592					0.09039656320032918
AGKVRGQTPK	10	Unmodified	_AGKVRGQTPK_					0	0	0		ENSG00000149806|ENST00000529639|FAU;ENST00000531357.1_1_11:64888296-64888581:-|nuORF	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3121337890625	2	521.311815	1040.60908	0.38221	0.00019925	1.1858	0.00061816	1.568	0.00081741	521.3123320844358	12.396	0.26176	12.396	12.249	12.51	0					17	8	3	0	0	0	0.15289	1	2605	2605		83.647	1.4065	1	261380			1581	4908	925	931	1593	1593					0.09039656320032918
AGLALFIFLQ	10	Unmodified	_AGLALFIFLQ_					0	0	0			REV__OR2B6|p.L211*|1|0.37|ENSG00000124657|chr6:27957868-27957868|C/-|frameshift_variant	REV__OR2B6|p.L211*|1|0.37|ENSG00000124657|chr6:27957868-27957868|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.3040771484375	2	546.826235	1091.63792	0.46653	0.00025511	-3.4544	-0.001889	-2.9879	-0.0016338	546.8242799873994	26.179	0.10375	26.179	26.113	26.216	0					5	3	2	0	0	0	0.65051	1	8208	8208		30.504	3.4563	1	54395	+		1582	14410	926	932	1594	1594					0.09576380896464798
AGLCFINLLGP	11	Unmodified	_AGLCFINLLGP_					0	0	0			REV__ENST00000447413.1_1_2:178188087-178196943:-|nuORF	REV__ENST00000447413.1_1_2:178188087-178196943:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2096252441406	3	373.207327	1116.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.198	1	47.198	46.698	47.698	0								0	0	0	0.45674	1	18861	18861		20.837	3.004	1		+		1583	19287	927	933	1595	1595					0.04651546639342996
AGLIAASRHL	10	Unmodified	_AGLIAASRHL_					0	0	0			REV__nc|ENSG00000103502|O14735-2|CDIPT	REV__nc|ENSG00000103502|O14735-2|CDIPT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.8689270019531	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.64	1	53.64	53.14	54.14	0								0	0	0	0.4201	1	19580	19580		23.523	3.5259	1		+		1584	20320	928	934	1596	1596					0.0841227129130857
AGLKLAKK	8	Unmodified	_AGLKLAKK_					0	0	0			REV__ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	REV__ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.7866516113281	2	414.786913	827.559273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.679	1	11.679	11.179	12.179	0								0	0	0	1.7419	1	2451	2451		33.516	6.7195	1		+		1585	12237	929	935	1597	1597					0.1385957338203525
AGLKLAKK	8	Unmodified	_AGLKLAKK_					0	0	0			REV__ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	REV__ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.786865234375	2	414.786913	827.559273	1.0066	0.00041751	-0.88776	-0.00036823	0.11882	4.9284E-05	414.7864318826789	11.576	0.10957	11.576	11.541	11.651	0					5	3	2	0	0	0	0.6282	1	2282	2282		44.531	0	1	271120	+		1586	12237	929	935	1598	1598					0.1385957338203525
AGLKLAKK	8	Unmodified	_AGLKLAKK_					0	0	0			REV__ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	REV__ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.78680419921875	2	414.786913	827.559273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.624	1	11.624	11.124	12.124	0								0	0	0	1.7419	1	2294	2294		44.531	0	1		+		1587	12237	929	935	1599	1599					0.1385957338203525
AGLKSSRI	8	Unmodified	_AGLKSSRI_					0	0	0			REV__ENSG00000101162|ENST00000217133|TUBB1	REV__ENSG00000101162|ENST00000217133|TUBB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.25628662109375	2	416.255977	830.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.497	1	15.497	14.997	15.997	0								0	0	0	1.7419	1	3490	3490		42.474	0	1		+		1588	13588	930	936	1600	1600					0.07537221962900276
AGLLAAASLV	10	Unmodified	_AGLLAAASLV_					0	0	0		ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2728576660156	2	443.273835	884.533118	0.51614	0.00022879	-1.1715	-0.00051931	-0.65538	-0.00029051	443.27330113242965	37.014	0.17111	37.014	36.894	37.065	0					8	5	2	0	0	0	0.47621	1	14456	14456		47.916	0	1	37933			1589	3851	931	937	1601	1601					0.08623259419880469
AGLLAGDRLV	10	Unmodified	_AGLLAGDRLV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.79498291015625	2	492.795466	983.57638	0.37758	0.00018607	0.47446	0.00023381	0.85204	0.00041988	492.79562744320424	19.681	0.14411	19.681	19.587	19.731	0					6	3	2	0	0	0	0.14393	1	5383	5383		87.754	0.057861	1	171110			1590	2563	932	938	1602	1602					0.08393449197171776
AGLPAEVYIQD	11	Unmodified	_AGLPAEVYIQD_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.53662109375	3	392.536278	1174.587	0.88536	0.00034754	-1.318	-0.00051737	-0.43266	-0.00016984	392.53611317138603	36.193	0.45013	36.193	36.019	36.469	0					28	12	3	0	0	0	0.54316	1	13617	13617		41.08	1.2069	1	226180			1591	7403	933	939	1603	1603					0.006693870609524311
AGLPAEVYIQD	11	Unmodified	_AGLPAEVYIQD_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.5364990234375	3	392.536278	1174.587	0.45349	0.00017801	-0.75284	-0.00029552	-0.29935	-0.0001175	392.5363163204396	36.123	0.71373	36.123	35.865	36.579	0					37	14	5	0	0	0	0.52595	1	13996	13996		42.338	2.4649	1	1118200			1592	7403	933	939	1604	1604					0.006693870609524311
AGLPIPRVPSE	11	Unmodified	_AGLPIPRVPSE_					0	0	0		tr|U7SF62|U7SF62_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02344PE=4SV=1	tr|U7SF62|U7SF62_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02344PE=4SV=1	tr|U7SF62|U7SF62_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02344PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.2205505371094	3	379.220513	1134.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.086	1	25.086	24.586	25.586	0								0	0	0	0.45674	1	7923	7923		24.232	1.6522	1				1593	22568	934	940	1605	1605					0.07777389914440391
AGLRHRRE	8	Unmodified	_AGLRHRRE_					0	0	0		ENST00000507621.1_1_5:148743537-148743774:+|nuORF;ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000507621.1_1_5:148743537-148743774:+|nuORF	ENST00000507621.1_1_5:148743537-148743774:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.19415283203125	3	332.193291	993.558044	3.0079	0.00099921	-0.5872	-0.00019506	2.4207	0.00080414	332.1931038217469	29.574	0.35721	29.574	29.424	29.781	0					14	7	3	0	0	0	0.77246	1	10837	10837		19.997	0	1	693430			1594	10165	935	941	1606	1606					0.06100752065844972
AGLRSPCPGQH	11	Unmodified	_AGLRSPCPGQH_					0	0	0		ENST00000591144.1_1_17:76134504-76137190:+|nuORF;nc|ENSG00000167895|Q8IU68-2|TMC8;ENSG00000167895|ENST00000318430|TMC8	ENST00000591144.1_1_17:76134504-76137190:+|nuORF	ENST00000591144.1_1_17:76134504-76137190:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.8533630371094	3	374.853947	1121.54001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.179	1	12.179	11.679	12.679	0								0	0	0	0.45674	1	2510	2510		20.03	2.5625	1				1595	6035	936	942	1607	1607					-0.015897509711976454
AGLTTLAR	8	Unmodified	_AGLTTLAR_					0	0	0			REV__nc|ENSG00000167261|Q9H4A9-3|DPEP2	REV__nc|ENSG00000167261|Q9H4A9-3|DPEP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.7427978515625	2	401.742702	801.470852	0.41608	0.00016716	-0.18318	-7.3591E-05	0.2329	9.3565E-05	401.7426317476433	15.991	0.11656	15.991	15.896	16.013	0					6	2	3	0	0	0	0.44433	1	4478	4478		65.803	12.452	1	383600	+		1596	16177	937	943	1608	1608					0.062175330715604105
AGLVLKAQ	8	Unmodified	_AGLVLKAQ_					0	0	0			REV__ENST00000589645.5_1_17:42461260-42462716:-|nuORF	REV__ENST00000589645.5_1_17:42461260-42462716:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.2552490234375	2	400.255446	798.496338	0.067561	2.7041E-05	-0.57584	-0.00023048	-0.50828	-0.00020344	400.25519496738315	15.444	0.11578	15.444	15.385	15.5	0					4	2	2	0	0	0	0.25053	1	4231	4231		100.27	8.0821	1	372330	+		1597	20510	938	944	1609	1609					0.08903007593983148
AGMAGPTVVVE	11	Unmodified	_AGMAGPTVVVE_					0	0	0			REV__ENSG00000135622|ENST00000357877|SEMA4F	REV__ENSG00000135622|ENST00000357877|SEMA4F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7659912109375	2	515.765517	1029.51648	-0.078955	-4.0722E-05	0.51411	0.00026516	0.43516	0.00022444	515.7658084350529	20.59	0.3233	20.59	20.438	20.761	0					23	10	3	0	0	0	0.49805	1	5817	5817		44.377	10.862	1	388540	+		1598	14814	939	945	1610	1610					0.0029039047165042575
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(130)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7493896484375	2	452.74967	903.484787	-0.015633	-7.0776E-06	-0.15331	-6.9413E-05	-0.16895	-7.6491E-05	452.74952431160733	22.437	0.43424	22.437	22.357	22.791	0					19	13	2	0	0	0	0.013544	1	6339	6339		133.47	51.164	1	155340			1599	6517	940	946	1611	1611		270			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(150)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.74932861328125	2	452.74967	903.484787	0.68134	0.00030848	-0.67367	-0.000305	0.0076704	3.4728E-06	452.74911235154394	22.781	0.72993	22.781	22.687	23.417	0					42	17	3	0	0	0	0.0072873	1	7440	7440		148.21	27.585	1	1332500			1600	6517	940	946	1612	1612		270			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(110)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.74951171875	2	452.74967	903.484787	-1.1949	-0.00054099	1.2045	0.00054535	0.0096442	4.3664E-06	452.750056961979	22.472	0.46136	22.472	22.393	22.854	0					23	15	2	0	0	0	0.032656	1	6618	6618		106.42	24.175	1	263840			1601	6517	940	946	1613	1613		270			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(150)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7493591308594	2	452.74967	903.484787	0.72086	0.00032637	-0.15124	-6.8475E-05	0.56962	0.00025789	452.7490694512648	22.665	1.0117	22.665	22.55	23.562	0					36	20	3	0	0	0	0.0059637	1	7782	7782		153.88	33.264	1	1022100			1602	6517	940	946	1614	1614		270			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(94)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.749267578125	2	452.74967	903.484787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.559	1	22.559	22.059	23.059	0								0	0	0	0.03352	1	6740	6740		94.006	9.0909	1				1603	6517	940	946	1615	1615		270			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(110)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7495422363281	2	452.74967	903.484787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.544	1	22.544	22.044	23.044	0								0	0	0	0.012934	1	6733	6733		106.42	10.225	1				1604	6517	940	946	1616	1616		270			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(150)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.749267578125	2	452.74967	903.484787	-0.41351	-0.00018722	-0.29655	-0.00013426	-0.71006	-0.00032148	452.7495761016332	22.797	0.61155	22.797	22.538	23.15	0					25	12	4	0	0	0	0.0072873	1	7573	7573		148.21	54.2	1	1236500			1605	6517	940	946	1617	1617		270			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(160)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.74945068359375	2	452.74967	903.484787	0.87721	0.00039716	-0.70948	-0.00032122	0.16774	7.5943E-05	452.74904218609674	22.704	0.91145	22.704	22.572	23.484	0					42	18	4	0	0	0	0.005007	1	7640	7640		157.99	37.368	1	1084800			1606	6517	940	946	1618	1618		270			0.02918442508348562
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.7520751953125	2	444.752213	887.489873	-0.29425	-0.00013087	-0.91828	-0.00040841	-1.2125	-0.00053928	444.7520840376715	29.29	0.27684	29.29	29.182	29.459	0					27	10	3	0	0	0	0.0059637	1	9209	9209		153.88	57.837	1	798630			1607	6517	940	947	1619	1619					0.04162746370957393
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.75238037109375	2	444.752213	887.489873	-0.38181	-0.00016981	-0.95528	-0.00042486	-1.3371	-0.00059468	444.7522280884005	29.566	0.37766	29.566	29.434	29.812	0					29	9	4	0	0	0	0.0027134	1	10560	10560		170.31	60.61	1	4465300			1608	6517	940	947	1620	1620					0.04162746370957393
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.75201416015625	2	444.752213	887.489873	-1.1612	-0.00051646	0.32917	0.0001464	-0.83206	-0.00037006	444.75246303997505	29.313	0.43972	29.313	29.214	29.653	0					56	17	5	0	0	0	0.0072873	2	9512	9512;9655		148.21	56.015	1	6305400			1609	6517	940	947	1621;1622	1621					0.04162746370957393
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7521667480469	2	444.752213	887.489873	0.55339	0.00024612	-1.6051	-0.00071388	-1.0517	-0.00046775	444.75171584682283	29.557	0.6918	29.557	29.367	30.059	0					43	14	5	0	0	0	0.0072873	1	10946	10946		148.21	42.937	1	40273000			1610	6517	940	947	1623	1623					0.04162746370957393
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.7518310546875	2	444.752213	887.489873	-0.47402	-0.00021082	-0.49735	-0.0002212	-0.97137	-0.00043202	444.75208797693296	29.342	0.41829	29.342	29.209	29.628	0					29	10	5	0	0	0	0.0072873	1	9848	9848		148.21	42.937	1	6651200			1611	6517	940	947	1624	1624					0.04162746370957393
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.7519836425781	2	444.752213	887.489873	-2.7892	-0.0012405	1.8011	0.00080103	-0.9881	-0.00043946	444.75319411546883	29.333	0.4146	29.333	29.24	29.655	0					31	10	5	0	0	0	0.013544	1	9840	9840		133.47	41.278	1	5119600			1612	6517	940	947	1625	1625					0.04162746370957393
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7519226074219	2	444.752213	887.489873	0.79241	0.00035243	-1.8864	-0.000839	-1.094	-0.00048658	444.7515954087426	29.49	0.85666	29.49	29.291	30.147	0					51	17	7	0	0	0	0.0072873	1	10800	10800		148.21	41.791	1	27835000			1613	6517	940	947	1626	1626					0.04162746370957393
AGMALGIQK	9	Unmodified	_AGMALGIQK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7521667480469	2	444.752213	887.489873	2.5896	0.0011517	-3.5366	-0.0015729	-0.94692	-0.00042114	444.7509154598252	29.524	0.80525	29.524	29.375	30.18	0					44	16	5	0	0	0	0.0072873	1	10792	10792		148.21	42.937	1	29365000			1614	6517	940	947	1627	1627					0.04162746370957393
AGMKLWRQ	8	Unmodified	_AGMKLWRQ_					0	0	0			REV__ENST00000422911.5_1_21:43279713-43299449:-|nuORF	REV__ENST00000422911.5_1_21:43279713-43299449:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.26953125	2	495.271104	988.527655	-0.040093	-1.9857E-05	-2.5808	-0.0012782	-2.6209	-0.001298	495.26952331277363	17.76	0.11829	17.76	17.701	17.819	0					6	2	3	0	0	0	0.59411	1	5347	5347		50.025	5.9077	1	198770	+		1615	19092	941	948	1628	1628					0.03293257356438062
AGMTVRSI	8	Unmodified	_AGMTVRSI_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.7287292480469	2	417.728738	833.442923	-0.18064	-7.5457E-05	-0.0084053	-3.5111E-06	-0.18904	-7.8968E-05	417.7287190164186	24.306	0.098156	24.306	24.269	24.367	0					5	3	2	0	0	0	0.57802	1	7159	7159		52.299	9.8247	1	157320			1616	10099	942	949	1629	1629					0.01953886819831041
AGMTVRSI	8	Unmodified	_AGMTVRSI_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.7285461425781	2	417.728738	833.442923	-0.84003	-0.00035091	0.41086	0.00017163	-0.42917	-0.00017928	417.72887077565787	24.57	0.17888	24.57	24.478	24.656	0					7	4	2	0	0	0	0.32815	1	8298	8298		79.451	2.6044	1	351410			1617	10099	942	949	1630	1630					0.01953886819831041
AGNASGSG	8	Unmodified	_AGNASGSG_					0	0	0		ENST00000569914.5_1_16:67144038-67154090:+|nuORF	ENST00000569914.5_1_16:67144038-67154090:+|nuORF	ENST00000569914.5_1_16:67144038-67154090:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	310.6347351074219	2	310.63536	619.256168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.32	1	49.32	48.82	49.82	0								0	0	0	1.7419	1	15442	15442		8.8223	0	1				1618	10789	943	950	1631	1631					-0.06869013744187669
AGNKKIEK	8	Unmodified	_AGNKKIEK_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2687072753906	2	444.269084	886.523616	0.21585	9.5895E-05	-0.79185	-0.0003518	-0.576	-0.0002559	444.2686705358618	21.619	0.36311	21.619	21.528	21.891	0					25	11	4	0	0	0	0.23527	1	5959	5959		133.81	27.397	1	4881100	+		1619	17332	944	951	1632	1632					0.07581491134385487
AGNKKIEK	8	Unmodified	_AGNKKIEK_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2688903808594	2	444.269084	886.523616	-0.4852	-0.00021556	-0.20236	-8.99E-05	-0.68755	-0.00030546	444.26890981782253	21.728	0.19093	21.728	21.629	21.82	0					10	4	3	0	0	0	0.24105	1	6337	6337		115.46	9.0438	1	953660	+		1620	17332	944	951	1633	1633					0.07581491134385487
AGNKKIEK	8	Unmodified	_AGNKKIEK_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.26837158203125	2	444.269084	886.523616	-0.47861	-0.00021263	-0.40035	-0.00017786	-0.87896	-0.00039049	444.2689161046912	21.848	0.3161	21.848	21.738	22.054	0					21	6	5	0	0	0	0.23367	1	7164	7164		120.62	5.162	1	15197000	+		1621	17332	944	951	1634	1634					0.07581491134385487
AGNKKIEK	8	Unmodified	_AGNKKIEK_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2693786621094	2	444.269084	886.523616	0.78206	0.00034745	-1.1412	-0.00050702	-0.35918	-0.00015957	444.2686169684721	21.879	0.31614	21.879	21.721	22.037	0					16	6	4	0	0	0	0.24915	1	7178	7178		102.77	8.7669	1	8224700	+		1622	17332	944	951	1635	1635					0.07581491134385487
AGNKPANAVL	10	Unmodified	_AGNKPANAVL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.772216796875	2	477.771991	953.529429	-0.083436	-3.9863E-05	-0.39247	-0.00018751	-0.47591	-0.00022737	477.7717736538443	30.997	0.10903	30.997	30.961	31.07	0					7	4	2	0	0	0	0.60076	1	9927	9927		34.173	3.8548	1	44376			1623	2680;6204	945	952	1636	1636					0.05080589646024691
AGNKPANAVL	10	Unmodified	_AGNKPANAVL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.77191162109375	2	477.771991	953.529429	-0.30785	-0.00014708	0.48175	0.00023017	0.17389	8.3082E-05	477.7720530643729	31.289	0.25458	31.289	31.197	31.452	0					12	6	3	0	0	0	0.60076	1	11379	11379		34.173	5.023	1	285380			1624	2680;6204	945	952	1637	1637					0.05080589646024691
AGNPLVQQGGQ	11	Unmodified	_AGNPLVQQGGQ_					0	0	0		nc|ENSG00000143442|Q7Z3K3-4|POGZ;POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000467287.5_1_1:151401965-151414680:-|nuORF;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ	nc|ENSG00000143442|Q7Z3K3-4|POGZ	nc|ENSG00000143442|Q7Z3K3-4|POGZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7760620117188	2	534.775262	1067.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.166	1	15.166	14.666	15.666	0								0	0	0	0.18035	1	3939	3939		65.465	3.358	1				1625	4556	946	953	1638	1638					0.004904828067765266
AGPEPGATAL	10	Unmodified	_AGPEPGATAL_					0	0	0			REV__TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant	REV__TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2293701171875	2	442.229625	882.444697	-0.52854	-0.00023374	-0.3159	-0.0001397	-0.84444	-0.00037344	442.22957333563664	31.156	0.20427	31.156	31.07	31.274	0					9	6	2	0	0	0	0.60076	1	10694	10694		34.173	0.65696	1	71385	+		1626	13163	947	954	1639	1639					-0.0012278089058099795
AGPESSLAL	9	Unmodified	_AGPESSLAL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7237548828125	2	422.724175	843.433798	0.99262	0.00041961	-1.4323	-0.00060545	-0.43964	-0.00018585	422.7237070860413	40.714	0.08831	40.714	40.642	40.73	0					6	4	2	0	0	0	0.26904	1	15525	15525		53.351	9.2347	1	45627			1627	801	948	955	1640	1640					0.005818167351435477
AGPESSLAL	9	Unmodified	_AGPESSLAL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.724365234375	2	422.724175	843.433798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.448	1	40.448	39.948	40.948	0								0	0	0	0.24724	1	13538	13538		44.117	0.49075	1				1628	801	948	955	1641	1641					0.005818167351435477
AGPGERGSA	9	Unmodified	_AGPGERGSA_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.1968688964844	2	401.196116	800.37768	3.1471	0.0012626	-0.95837	-0.00038449	2.1887	0.00087812	401.195726113802	48.243	0.20948	48.243	48.162	48.372	0					13	10	2	0	0	0	0.61124	1	19186	19186		14.865	14.865	1	65447			1629	7759	949	956	1642	1642					-0.030493913816712848
AGPKSMEV	8	Unmodified	_AGPKSMEV_					0	0	0		ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1	ENSG00000104419|ENST00000323851|NDRG1	ENSG00000104419|ENST00000323851|NDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.7073974609375	2	409.707471	817.400389	1.1276	0.00046198	-1.4553	-0.00059625	-0.32773	-0.00013427	409.70699184960245	23.15	0.31786	23.15	22.894	23.212	0					16	6	3	0	0	0	0.5676	1	7950	7950		53.351	6.585	1	570080			1630	2286	950	957	1643	1643					-0.01561508308395787
AGPLAPKGP	9	Unmodified	_AGPLAPKGP_					0	0	0			REV__ENSG00000141858|ENST00000533683|SAMD1	REV__ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.239501953125	2	404.239796	806.465038	0.61344	0.00024797	-1.2803	-0.00051753	-0.66682	-0.00026956	404.2393012970507	19.865	0.083138	19.865	19.829	19.912	0					4	2	2	0	0	0	0.41354	1	5229	5229		40.573	1.7665	1	180750	+		1631	15133	951	958	1644	1644					0.05406434559904483
AGPLAPKGP	9	Unmodified	_AGPLAPKGP_					0	0	0			REV__ENSG00000141858|ENST00000533683|SAMD1	REV__ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.23974609375	2	404.239796	806.465038	0.96201	0.00038888	-0.47043	-0.00019017	0.49158	0.00019871	404.2394100398757	20.201	0.15214	20.201	20.153	20.305	0					7	3	3	0	0	0	0.21116	1	6242	6242		60.294	2.4827	1	1259700	+		1632	15133	951	958	1645	1645					0.05406434559904483
AGPLAPKGP	9	Unmodified	_AGPLAPKGP_					0	0	0			REV__ENSG00000141858|ENST00000533683|SAMD1	REV__ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	404.2397766113281	2	404.239796	806.465038	0.15142	6.1209E-05	-0.11595	-4.6872E-05	0.035467	1.4337E-05	404.2396050245929	19.94	0.1083	19.94	19.889	19.997	0					6	2	3	0	0	0	0.41354	1	5526	5526		40.573	3.4135	1	140070	+		1633	15133	951	958	1646	1646					0.05406434559904483
AGPLAPKGP	9	Unmodified	_AGPLAPKGP_					0	0	0			REV__ENSG00000141858|ENST00000533683|SAMD1	REV__ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.2397155761719	2	404.239796	806.465038	-0.58104	-0.00023488	0.53384	0.0002158	-0.0472	-1.908E-05	404.2399463424052	20.103	0.26731	20.103	20.044	20.311	0					12	5	4	0	0	0	0.097811	1	6341	6341		79.939	0	1	900160	+		1634	15133	951	958	1647	1647					0.05406434559904483
AGPLERSQL	9	Unmodified	_AGPLERSQL_					0	0	0		ENST00000249923.7_1_11:14497478-14498490:-|nuORF	ENST00000249923.7_1_11:14497478-14498490:-|nuORF	ENST00000249923.7_1_11:14497478-14498490:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7701110839844	2	485.769448	969.524344	-0.020837	-1.0122E-05	-0.72055	-0.00035002	-0.74139	-0.00036014	485.76914206542597	23.093	0.28712	23.093	22.945	23.232	0					16	9	2	0	0	0	0.48389	1	6614	6614		34.173	3.6689	1	151270			1635	8240	952	959	1648	1648					0.03836285783427229
AGPLLQPAQL	10	Unmodified	_AGPLLQPAQL_					0	0	0		CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;CPEB2|p.C544Vfs*31|5|0.34|ENSG00000137449|chr4:15066234-15066234|T/-|frameshift_variant;ENSG00000137449|ENST00000538197|CPEB2	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53411865234375	3	336.53432	1006.58113	0.24138	8.1234E-05	-0.31438	-0.0001058	-0.072999	-2.4567E-05	336.5341449025839	40.814	0.7192	40.814	40.563	41.282	0					53	38	2	0	0	0	0.72821	1	13170	13170		16.717	0	1	89739			1636	681	953	960	1649	1649					0.0781033333993264
AGPLRKSSL	9	Unmodified	_AGPLRKSSL_					0	0	0		ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4;ENST00000460782.1_1_X:153186028-153186838:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.78192138671875	2	464.782359	927.550165	0.083761	3.8931E-05	-0.80091	-0.00037225	-0.71715	-0.00033332	464.7819584415549	20.038	0.14197	20.038	19.97	20.112	0					9	4	3	0	0	0	0.12239	1	5301	5301		74.255	7.8258	1	283670			1637	1823	954	961	1650	1650					0.08349180025709302
AGPLRKSSL	9	Unmodified	_AGPLRKSSL_					0	0	0		ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4;ENST00000460782.1_1_X:153186028-153186838:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7826843261719	2	464.782359	927.550165	-0.16212	-7.5352E-05	0.88648	0.00041202	0.72436	0.00033667	464.78278119502664	20.149	0.096046	20.149	20.062	20.158	0					4	2	2	0	0	0	0.1424	1	5602	5602		69.628	8.6557	1	234060			1638	1823	954	961	1651	1651					0.08349180025709302
AGPMHPRLGP	10	Unmodified	_AGPMHPRLGP_					0	0	0		ENSG00000164736|ENST00000297316|SOX17	ENSG00000164736|ENST00000297316|SOX17	ENSG00000164736|ENST00000297316|SOX17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7760620117188	2	516.774011	1031.53347	0.32043	0.00016559	2.5768	0.0013316	2.8972	0.0014972	516.7760049162581	14.491	0.093305	14.491	14.435	14.529	0					6	4	2	0	0	0	0.63073	1	2999	2999		30.504	5.0535	1	32000			1639	5722	955	962	1652	1652					0.01896355868120736
AGPMRQISL	9	Unmodified	_AGPMRQISL_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1;RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant;PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	ENST00000476412.5_1_1:114308604-114340019:-|nuORF;PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.76739501953125	2	486.768394	971.522236	-1.2426	-0.00060484	-0.12046	-5.8634E-05	-1.363	-0.00066347	486.76842082855796	34.743	0.22168	34.743	34.656	34.878	0					19	10	3	0	0	0	0.33044	1	11722	11722		47.657	3.1263	1	196940			1640	1651;7190	956	963	1653	1653					0.035335337739752504
AGPPGGRSL	9	Unmodified	_AGPPGGRSL_					0	0	0		ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.2244873046875	2	406.224677	810.434801	-0.12063	-4.9004E-05	-0.13484	-5.4774E-05	-0.25547	-0.00010378	406.22456132725677	21.442	0.56096	21.442	21.087	21.648	0					22	18	2	0	0	0	0.60749	1	5890	5890		20.947	0.4651	1	89894			1641	2637	957	964	1654	1654					0.022000758947001486
AGPPGGRSL	9	Unmodified	_AGPPGGRSL_					0	0	0		ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.2245788574219	2	406.224677	810.434801	-0.52953	-0.00021511	0.37657	0.00015297	-0.15296	-6.2134E-05	406.2248542875003	21.712	0.73515	21.712	21.34	22.075	0					36	17	3	0	0	0	0.35021	1	6944	6944		45.972	8.1607	1	456280			1642	2637	957	964	1655	1655					0.022000758947001486
AGPRTLTALQ	10	Unmodified	_AGPRTLTALQ_					0	0	0			REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.2012023925781	3	343.201341	1026.58219	-1.951	-0.0006696	0.85492	0.00029341	-1.0961	-0.00037619	343.20187416181784	19.739	0.13548	19.739	19.645	19.781	0					5	3	2	0	0	0	0.6796	1	5428	5428		17.833	0	1	83307	+		1643	13366	958	965	1656	1656					0.06996547708831713
AGPSNGVAP	9	Unmodified	_AGPSNGVAP_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;TSEN34|p.L178Cfs*214|1|0.36|ENSG00000170892|chr19:54192155-54192155|C/-|frameshift_variant	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.1956481933594	2	385.195585	768.376617	0.18569	7.1527E-05	0.33083	0.00012744	0.51652	0.00019896	385.1955712004311	15.73	0.21416	15.73	15.634	15.849	0					7	4	2	0	0	0	0.5879	1	4353	4353		23.042	1.0826	1	147980			1644	6266	959	966	1657	1657					-0.01683605750577044
AGPSRAVR	8	Unmodified	_AGPSRAVR_					0	0	0		ENST00000494443.5_1_X:153608322-153608766:+|nuORF;ENST00000486738.5_1_X:153608322-153609415:+|nuORF;ENSG00000102119|ENST00000369842|EMD	REV__HCN4|p.A21Pfs*211|2|0.22|ENSG00000138622|chr15:73368210-73368210|C/-|frameshift_variant	REV__HCN4|p.A21Pfs*211|2|0.22|ENSG00000138622|chr15:73368210-73368210|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.2400817871094	2	407.238119	812.461684	1.1688	0.00047598	4.0101	0.0016331	5.1789	0.0021091	407.239600722372	26.469	0.76044	26.469	26.017	26.778	0					26	15	3	0	0	0	0.63077	1	9488	9488		44.117	6.9577	1	1590500			1645	20716	960	967	1658	1658					0.047951845058946674
AGPTALVL	8	Unmodified	_AGPTALVL_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	371.22747802734375	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.737	1	38.737	38.237	39.237	0								0	0	0	1.7419	1	13053	13053		21.702	7.927	1		+		1646	16502	961	968	1659	1659					0.06263629811314786
AGPVGFAK	8	Unmodified	_AGPVGFAK_					0	0	0			REV__ENSG00000244617|ENST00000320256|ASPRV1	REV__ENSG00000244617|ENST00000320256|ASPRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	373.7129821777344	2	373.713414	745.412274	0.047811	1.7868E-05	-0.20037	-7.4881E-05	-0.15256	-5.7013E-05	373.7132720130904	18.864	0.32421	18.864	18.678	19.002	0					22	9	3	0	0	0	0.4434	1	4739	4739		65.897	2.919	1	894580	+		1647	17711	962	969	1660	1660					0.029384764970814103
AGPVGFAK	8	Unmodified	_AGPVGFAK_					0	0	0			REV__ENSG00000244617|ENST00000320256|ASPRV1	REV__ENSG00000244617|ENST00000320256|ASPRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.7132873535156	2	373.713414	745.412274	0.33865	0.00012656	-0.41863	-0.00015645	-0.079981	-2.989E-05	373.71325802131196	19.207	0.79262	19.207	18.913	19.706	0					34	18	4	0	0	0	0.4434	1	5703	5703		65.897	2.919	1	5164800	+		1648	17711	962	969	1661	1661					0.029384764970814103
AGQAKYVY	8	Unmodified	_AGQAKYVY_					0	0	0			REV__nc|ENSG00000179889|Q6P996-3|PDXDC1	REV__nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2344665527344	2	450.23471	898.454868	0.63166	0.00028439	-1.1324	-0.00050987	-0.50079	-0.00022547	450.2342251103895	33.5	0.25311	33.5	33.379	33.632	0					12	6	2	0	0	0	0.72892	1	12403	12403		29.842	6.8048	1	246600	+		1649	16792	963	970	1662	1662					0.001578268346634104
AGQKLSGSSP	10	Unmodified	_AGQKLSGSSP_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.24566650390625	2	466.245806	930.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.895	1	12.895	12.395	13.395	0								0	0	0	0.21707	1	3013	3013		62.107	6.6032	1				1650	7761	964	971	1663	1663					0.009040065124509056
AGQTHRSSR	9	Unmodified	_AGQTHRSSR_					0	0	0			REV__ENSG00000277363|ENST00000617146|SRCIN1	REV__ENSG00000277363|ENST00000617146|SRCIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2572326660156	2	500.257571	998.500589	0.89746	0.00044896	-0.87337	-0.00043691	0.024087	1.205E-05	500.25713005810496	13.104	0.19067	13.104	13.012	13.203	0					8	4	3	0	0	0	0.25716	1	3101	3101		54.776	4.7518	1	422140	+		1651	17834	965	972	1664	1664					0.0012786506962356725
AGQVAAASPL	10	Unmodified	_AGQVAAASPL_					0	0	0		ENSG00000109255|ENST00000264218|NMU	ENSG00000109255|ENST00000264218|NMU	ENSG00000109255|ENST00000264218|NMU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.74493408203125	2	442.745442	883.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.463	1	21.463	20.963	21.963	0								0	0	0	0.38797	1	7122	7122		34.173	0	1				1652	2572	966	973	1665	1665					0.029932118633610116
AGRDGKLGVA	10	Unmodified	_AGRDGKLGVA_					0	0	0			REV__ENST00000488128.6_1_1:32121928-32135507:-|nuORF	REV__ENST00000488128.6_1_1:32121928-32135507:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.269775390625	2	472.269616	942.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.656	1	12.656	12.156	13.156	0								0	0	0	0.3805	1	2418	2418		36.447	2.2742	1		+		1653	13348	967	974	1666	1666					0.05111705503270514
AGRDKTLAIL	10	Unmodified	_AGRDKTLAIL_					0	0	0			REV__ENST00000472379.1_1_10:120863654-120864310:+|nuORF	REV__ENST00000472379.1_1_10:120863654-120864310:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.8731384277344	3	353.216991	1056.62914	-0.85192	-0.00030091	0.95592	0.00033765	0.104	3.6735E-05	353.21729841905676	18.069	0.16752	18.069	17.989	18.156	0					8	5	2	0	0	0	0.63073	1	4635	4635		35.152	0	1	405160	+		1654	19491	968	975	1667	1667					0.10309407260001535
AGRHVGARGA	10	Unmodified	_AGRHVGARGA_					0	0	0		ENST00000356663.7_2_19:1014392-1021086:-|nuORF	ENST00000356663.7_2_19:1014392-1021086:-|nuORF	ENST00000356663.7_2_19:1014392-1021086:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2662353515625	2	476.265199	950.515845	2.2745	0.0010833	-0.036294	-1.7286E-05	2.2382	0.001066	476.26516561198355	20.019	0.77066	20.019	19.557	20.328	0					28	15	4	0	0	0	0.30737	1	6297	6297		66.429	66.429	1	8823200			1655	8808	969	976	1668	1668					0.038607766574727975
AGRKRQGPGP	10	Unmodified	_AGRKRQGPGP_					0	0	0			REV__ENST00000398554.1_1_17:37778113-37778526:+|nuORF	REV__ENST00000398554.1_1_17:37778113-37778526:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7745971679688	2	512.293956	1022.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.182	1	16.182	15.682	16.682	0								0	0	0	0.39264	1	3832	3832		27.882	12.24	1		+		1656	18924	970	977	1669	1669					0.06297618863050047
AGRVHKTT	8	Unmodified	_AGRVHKTT_					0	0	0		nc|ENSG00000188916|Q6ZSG2-2|INSYN2A;ENSG00000188916|ENST00000522781|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.250732421875	2	435.251226	868.487899	0.82777	0.00036029	-0.29988	-0.00013052	0.52789	0.00022976	435.25097981463324	46.185	1.3887	46.185	45.832	47.221	0					148	79	3	0	0	0	0.78999	1	17721	17721		13.775	0	1	328570			1657	7285	971	978	1670	1670					0.048394536773685104
AGRYPALLW	9	Unmodified	_AGRYPALLW_					0	0	0		ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.5306396484375	3	349.53091	1045.5709	-0.81467	-0.00028475	0.18896	6.6049E-05	-0.6257	-0.0002187	349.5309890213767	19.19	0.13448	19.19	19.117	19.252	0					7	4	2	0	0	0	0.60749	1	5155	5155		20.947	0	1	210600			1658	8318	972	979	1671	1671					0.049937704053718335
AGSAAALLPLC	11	Unmodified	_AGSAAALLPLC_					0	0	0		ENST00000491929.1_1_13:103452763-103457688:+|nuORF	ENST00000491929.1_1_13:103452763-103457688:+|nuORF	ENST00000491929.1_1_13:103452763-103457688:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.770751953125	2	493.770603	985.526652	-0.4778	-0.00023592	0.35655	0.00017606	-0.12124	-5.9867E-05	493.77061699113636	45.089	0.12428	45.089	44.999	45.123	0					11	7	2	0	0	0	0.31478	1	16824	16824		60.972	11.53	1	47242			1659	10077	973	980	1672	1672					0.0333099819687277
AGSGKTTFV	9	Unmodified	_AGSGKTTFV_					0	0	0		ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	ENSG00000198522|ENST00000610189|GPN1	ENSG00000198522|ENST00000610189|GPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.2311096191406	2	434.232168	866.449782	-0.80205	-0.00034828	-1.1219	-0.00048715	-1.9239	-0.00083543	434.23172284103646	25.625	0.10465	25.625	25.562	25.667	0					5	3	2	0	0	0	0.37197	1	8001	8001		44.117	5.3107	1	56514			1660	7573	974	981	1673	1673					0.011215229720392017
AGSICRTP	8	Unmodified	_AGSICRTP_					0	0	0		PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.70562744140625	2	402.705263	803.395972	0.6643	0.00026752	-1.2186	-0.00049074	-0.5543	-0.00022322	402.7049014519592	19.585	0.59733	19.585	19.138	19.735	0					33	13	3	0	0	0	0.34985	1	5803	5803		76.847	13.54	1	848290			1661	11939	975	982	1674	1674					-0.013589727313274125
AGSKVLQKAQ	10	Unmodified	_AGSKVLQKAQ_					0	0	0			REV__ENST00000481121.5_1_6:31921790-31926696:-|nuORF	REV__ENST00000481121.5_1_6:31921790-31926696:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8731689453125	3	343.873224	1028.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.53	1	12.53	12.03	13.03	0								0	0	0	0.27541	1	2687	2687		58.246	1.8125	1		+		1662	17478	976	983	1675	1675					0.08468834225891442
AGSLRIKLQ	9	Unmodified	_AGSLRIKLQ_					0	0	0			REV__ENSG00000196544|ENST00000389017|BORCS6	REV__ENSG00000196544|ENST00000389017|BORCS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.21136474609375	3	329.209948	984.608014	1.5085	0.00049661	1.9785	0.00065136	3.487	0.001148	329.21070140942226	32.045	0.24588	32.045	31.945	32.191	0					15	5	4	0	0	0	0.30841	1	12154	12154		49.536	3.5638	1	371860	+		1663	17266	977	984	1676	1676					0.11509441951113786
AGSPGSDGKE	10	Unmodified	_AGSPGSDGKE_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7041015625	2	452.703971	903.393389	-0.11814	-5.3483E-05	-0.19281	-8.7287E-05	-0.31095	-0.00014077	452.70416762508324	15.251	0.20895	15.251	15.147	15.356	0					13	4	4	0	0	0	0.43008	1	4119	4119		52.937	3.4952	1	3820200	+		1664	13294	978	985	1677	1677					-0.06217149655276444
AGSQARVVLF	10	Unmodified	_AGSQARVVLF_					0	0	0		ENST00000575350.2_2_16:3440159-3443793:-|nuORF	ENST00000575350.2_2_16:3440159-3443793:-|nuORF	ENST00000575350.2_2_16:3440159-3443793:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.8704833984375	3	349.869703	1046.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.613	1	12.613	12.113	13.113	0								0	0	0	0.4201	1	2726	2726		16.717	1.3843	1				1665	10824	979	986	1678	1678					0.06584851571460604
AGSSNVKF	8	Unmodified	_AGSSNVKF_					0	0	0		MYBPC3|p.K87N|1|0.1|ENSG00000134571|chr11:47351270-47351270|C/A|missense_variant	MYBPC3|p.K87N|1|0.1|ENSG00000134571|chr11:47351270-47351270|C/A|missense_variant	MYBPC3|p.K87N|1|0.1|ENSG00000134571|chr11:47351270-47351270|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.2107849121094	2	405.211235	808.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.444	1	18.444	17.944	18.944	0								0	0	0	1.7419	1	4589	4589		23.042	1.0826	1				1666	11393	980	987	1679	1679					-0.003950327164830014
AGSSSKLR	8	Unmodified	_AGSSSKLR_					0	0	0			REV__ENST00000540725.5_1_11:62623143-62623200:-|nuORF	REV__ENST00000540725.5_1_11:62623143-62623200:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.2296447753906	2	403.229959	804.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.141	1	13.141	12.641	13.641	0								0	0	0	1.7419	1	2924	2924		23.042	0.0057756	1		+		1667	20133	981	988	1680	1680					0.035320585491263046
AGSSWWKK	8	Unmodified	_AGSSWWKK_					0	0	0			REV__nc|ENSG00000240303|Q709F0-3|ACAD11	REV__nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2475891113281	2	475.248152	948.481751	0.61956	0.00029444	-2.4526	-0.0011656	-1.833	-0.00087114	475.24724887585927	12.674	0.26556	12.674	12.588	12.854	0					14	6	4	0	0	0	0.51384	1	2919	2919		58.782	0.55203	1	2687500	+		1668	17680	982	989	1681	1681					0.005449354458392008
AGSYRKTP	8	Unmodified	_AGSYRKTP_					0	0	0			REV__CPSF7|p.S220Kfs*99|1|0.2|ENSG00000149532|chr11:61416411-61416412|-/T|frameshift_variant	REV__CPSF7|p.S220Kfs*99|1|0.2|ENSG00000149532|chr11:61416411-61416412|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.2375793457031	2	440.237784	878.461016	0.57764	0.0002543	-1.2519	-0.00055115	-0.67431	-0.00029686	440.23722539757574	15.777	0.36085	15.777	15.669	16.03	0					14	7	3	0	0	0	0.53424	1	4396	4396		56.721	1.2168	1	1288200	+		1669	12632	983	990	1682	1682					0.016923450661806783
AGTANPTVAKR	11	Unmodified	_AGTANPTVAKR_					0	0	0		TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;TENM3|p.Y2250Mfs*4|1|0.24|ENSG00000218336|chr4:182793414-182793414|T/-|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3	TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant	TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.3093872070312	2	543.306729	1084.59891	-1.4906	-0.00080985	2.9994	0.0016296	1.5088	0.00081972	543.308123965775	15.17	0.25798	15.17	15.007	15.265	0					22	10	3	0	0	0	0.40021	1	3315	3315		51.528	2.0862	1	162570			1670	7840	984	991	1683	1683					0.059990485947992056
AGTATAFHI	9	Unmodified	_AGTATAFHI_					0	0	0		ENST00000358170.6_1_1:207968017-207968197:+|nuORF	ENST00000358170.6_1_1:207968017-207968197:+|nuORF	ENST00000358170.6_1_1:207968017-207968197:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.7320861816406	2	444.732335	887.450116	-1.1608	-0.00051624	-0.14478	-6.4388E-05	-1.3056	-0.00058062	444.7320610103863	24.97	0.22929	24.97	24.904	25.134	0					13	7	3	0	0	0	0.41354	1	7711	7711		40.573	0	1	192220			1671	8830	985	992	1684	1684					0.0018894269190923296
AGTATLIRAQ	10	Unmodified	_AGTATLIRAQ_					0	0	0		ENST00000556140.5_1_12:56748997-56753873:-|nuORF;ENST00000418572.6_1_12:56750323-56753874:-|nuORF;ENST00000557417.5_3_12:56748997-56753873:-|nuORF	ENST00000556140.5_1_12:56748997-56753873:-|nuORF	ENST00000556140.5_1_12:56748997-56753873:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.529541015625	3	334.529458	1000.56654	-0.70273	-0.00023508	0.71627	0.00023961	0.013534	4.5277E-06	334.52971473684613	15.27	0.22707	15.27	15.194	15.421	0					15	7	4	0	0	0	0.28675	1	3434	3434		68.846	12.412	1	2312600			1672	10663	986	993	1685	1685					0.06628261191792717
AGTHAHLR	8	Unmodified	_AGTHAHLR_					0	0	0			REV__ENST00000593209.5_2_17:40340836-40341070:-|nuORF	REV__ENST00000593209.5_2_17:40340836-40341070:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.7342224121094	2	431.735743	861.456933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.152	1	16.152	15.652	16.652	0								0	0	0	1.7419	1	3818	3818		24.203	0	1		+		1673	20548	987	994	1686	1686					0.020663003631284482
AGTHTNIPK	9	Unmodified	_AGTHTNIPK_					0	0	0		ENST00000565249.5_1_16:89680092-89703400:+|nuORF;ENST00000564281.5_1_16:89680092-89704100:+|nuORF;ENSG00000015413|ENST00000690203|DPEP1	ENST00000565249.5_1_16:89680092-89703400:+|nuORF	ENST00000565249.5_1_16:89680092-89703400:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7563171386719	2	469.756341	937.498129	0.53059	0.00024925	-0.60777	-0.0002855	-0.077177	-3.6254E-05	469.7560837197588	16.191	0.16825	16.191	16.131	16.3	0					5	3	2	0	0	0	0.10915	1	4447	4447		77.318	16.346	1	631030			1674	1079	988	995	1687	1687					0.02688016611944022
AGTLARFQ	8	Unmodified	_AGTLARFQ_					0	0	0		ENST00000583631.1_1_17:26890919-26898285:-|nuORF	ENST00000583631.1_1_17:26890919-26898285:-|nuORF	ENST00000583631.1_1_17:26890919-26898285:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.2402038574219	2	432.240327	862.466101	-0.47737	-0.00020634	0.47126	0.0002037	-0.0061111	-2.6415E-06	432.2406337074143	20.088	0.26812	20.088	19.978	20.246	0					8	5	2	0	0	0	0.46905	1	6468	6468		63.306	5.495	1	318590			1675	10885	989	996	1688	1688					0.02936648928800878
AGTLDQPL	8	Unmodified	_AGTLDQPL_					0	0	0		AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant;AGL|p.N1304Ifs*10|1|0.38|ENSG00000162688|chr1:99912472-99912472|A/-|frameshift_variant;AGL|p.K1407Nfs*8|1|0.39|ENSG00000162688|chr1:99915441-99915441|A/-|frameshift_variant;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.71868896484375	2	407.718893	813.423233	0.40517	0.0001652	-0.65171	-0.00026571	-0.24653	-0.00010052	407.71857972941916	15.172	0.11439	15.172	15.113	15.227	0					4	2	2	0	0	0	0.54629	1	4108	4108		55.504	5.4797	1	318200			1676	91	990	997	1689	1689					0.009058340807087006
AGTLLMSKHL	10	Unmodified	_AGTLLMSKHL_					0	0	0		ENST00000529637.5_1_1:22083076-22083133:-|nuORF	ENST00000529637.5_1_1:22083076-22083133:-|nuORF	ENST00000529637.5_1_1:22083076-22083133:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.537353515625	3	357.539077	1069.5954	0.87354	0.00031233	-3.9118	-0.0013986	-3.0382	-0.0010863	357.5375174806762	23.465	0.10464	23.465	23.369	23.473	0					4	2	2	0	0	0	0.65895	1	7763	7763		27.047	3.5246	1	51858			1677	10412	991	998	1690	1690					0.06338662496591496
AGTLLQHLR	9	Unmodified	_AGTLLQHLR_					0	0	0		nc|ENSG00000181350|Q8NAA5-2|LRRC75A;ENSG00000181350|ENST00000470794|LRRC75A	nc|ENSG00000181350|Q8NAA5-2|LRRC75A	nc|ENSG00000181350|Q8NAA5-2|LRRC75A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.8686828613281	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.022	1	50.022	49.522	50.522	0								0	0	0	0.35377	1	15082	15082		24.519	1.9395	1				1678	6849	992	999	1691	1691					0.0841227129131994
AGTNKGITALQ	11	Unmodified	_AGTNKGITALQ_					0	0	0		ENST00000260604.8_1_2:55870335-55906871:-|nuORF;ENSG00000138035|ENST00000447944|PNPT1;ENST00000450418.1_1_3:4024244-4024472:-|nuORF;ENST00000481066.1_1_2:55872466-55874499:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3016967773438	2	537.301113	1072.58767	0.2162	0.00011617	2.4673	0.0013257	2.6835	0.0014419	537.3014927521857	32.827	0.24405	32.827	32.737	32.981	0					17	6	4	0	0	0	0.21704	1	12090	12090		72.243	8.7094	1	268590			1679	4218	993	1000	1692	1692					0.05428226500657729
AGTPRLVL	8	Unmodified	_AGTPRLVL_					0	0	0		ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.760986328125	2	413.760895	825.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.288	1	35.288	34.788	35.788	0								0	0	0	1.7419	1	11564	11564		29.15	3.6994	1				1680	8223	994	1001	1693	1693					0.08750409968274653
AGTQTRKARE	10	Unmodified	_AGTQTRKARE_					0	0	0		ENST00000366595.7_1_1:236208958-236212171:-|nuORF	ENST00000366595.7_1_1:236208958-236212171:-|nuORF	ENST00000366595.7_1_1:236208958-236212171:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2097473144531	3	373.207266	1116.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.979	1	55.979	55.479	56.479	0								0	0	0	0.3998	1	21077	21077		30.569	7.191	1				1681	8895	995	1002	1694	1694					0.04633262963693596
AGTRWGHK	8	Unmodified	_AGTRWGHK_					0	0	0			REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.7426452636719	2	456.743568	911.472583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.433	1	14.433	13.933	14.933	0								0	0	0	1.7419	1	3123	3123		25.45	3.4903	1		+		1682	13977	996	1003	1695	1695					0.013305868801808174
AGTTGPCLCAQ	11	Unmodified	_AGTTGPCLCAQ_					0	0	0		AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|23|3|anti-sense	AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|23|3|anti-sense	AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|23|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2269592285156	2	511.225702	1020.43685	0.3519	0.0001799	2.353	0.0012029	2.7049	0.0013828	511.2270533819468	19.622	0.18048	19.622	19.492	19.673	0					6	4	2	0	0	0	0.51875	1	5374	5374		42.864	3.6114	1	71443			1683	128	997	1004	1696	1696					-0.07254999474002943
AGTTPAPAL	9	Unmodified	_AGTTPAPAL_					0	0	0			REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.7212219238281	2	399.721436	797.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.978	1	15.978	15.478	16.478	0								0	0	0	0.10093	1	4477	4477		71.378	2.8932	1		+		1684	18490	998	1005	1697	1697					0.021501379433289003
AGVAEVAGGL	10	Unmodified	_AGVAEVAGGL_					0	0	0		ENSG00000122707|ENST00000377966|RECK;ENST00000479053.1_1_9:36036974-36085209:+|nuORF;RECK|p.K442Nfs*27|1|0.1|ENSG00000122707|chr9:36102116-36102116|A/-|frameshift_variant;RECK|p.N685Tfs*12|2|0.31|ENSG00000122707|chr9:36112464-36112464|A/-|frameshift_variant;ENST00000475774.5_1_9:36036974-36058840:+|nuORF	ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2322998046875	2	422.232168	842.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.578	1	17.578	17.078	18.078	0								0	0	0	0.40446	1	4986	4986		29.15	1.2673	1				1685	3283	999	1006	1698	1698					0.022255229720599345
AGVFPLDGILP	11	Unmodified	_AGVFPLDGILP_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.2135009765625	3	366.877975	1097.6121	3.1655	0.0011614	-2.2093	-0.00081053	0.95625	0.00035083	366.8767994435084	28.415	0.81452	28.415	28.228	29.043	0					47	16	5	0	0	0	0.67983	1	10361	10361		29.551	3.659	1	2706200	+		1686	15039	1000	1007	1699	1699					0.06719486654174034
AGVFVDATK	9	Unmodified	_AGVFVDATK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2475280761719	2	454.247818	906.481082	-0.12891	-5.8555E-05	1.1735	0.00053304	1.0446	0.00047449	454.24840877230844	28.242	0.58492	28.242	28.012	28.597	0					29	12	4	0	0	0	0.14578	1	10314	10314		68.846	4.6389	1	662840			1687	6707	1001	1008	1700	1700					0.024100960061218757
AGVFVDATK	9	Unmodified	_AGVFVDATK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.24755859375	2	454.247818	906.481082	0.24736	0.00011236	0.43787	0.0001989	0.68523	0.00031127	454.24813277342486	28.077	0.3013	28.077	27.875	28.176	0					12	7	2	0	0	0	0.28504	1	9249	9249		51.528	10.101	1	106130			1688	6707	1001	1008	1701	1701					0.024100960061218757
AGVFVDATK	9	Unmodified	_AGVFVDATK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.24749755859375	2	454.247818	906.481082	0.0595	2.7028E-05	-0.88032	-0.00039988	-0.82082	-0.00037286	454.24735519499365	27.995	0.30275	27.995	27.907	28.21	0					11	7	2	0	0	0	0.16806	1	9241	9241		65.465	12.529	1	239200			1689	6707	1001	1008	1702	1702					0.024100960061218757
AGVFVDATK	9	Unmodified	_AGVFVDATK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2475891113281	2	454.247818	906.481082	-0.42061	-0.00019106	0.63128	0.00028676	0.21067	9.5697E-05	454.2480305007968	28.169	0.61474	28.169	27.959	28.574	0					22	12	3	0	0	0	0.10506	1	10159	10159		78.264	18.146	1	1561400			1690	6707	1001	1008	1703	1703					0.024100960061218757
AGVGADVV	8	Unmodified	_AGVGADVV_					0	0	0			REV__ENSG00000167741|ENST00000381550|GGT6	REV__ENSG00000167741|ENST00000381550|GGT6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.1889953613281	2	344.187229	686.359904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.873	1	21.873	21.373	22.373	0								0	0	0	1.7419	1	7319	7319		26.796	0	1		+		1691	16213	1002	1009	1704	1704					0.004178933634875648
AGVGAVPGWPR	11	Unmodified	_AGVGAVPGWPR_					0	0	0		ENST00000586702.1_1_19:11313124-11313960:-|nuORF	ENST00000586702.1_1_19:11313124-11313960:-|nuORF	ENST00000586702.1_1_19:11313124-11313960:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7940673828125	2	533.793258	1065.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.082	1	25.082	24.582	25.582	0								0	0	0	0.40668	1	7502	7502		35.618	0.46626	1				1692	10904	1003	1010	1705	1705					0.04179984774282275
AGVIRGQPK	9	Unmodified	_AGVIRGQPK_					0	0	0			REV__F7|p.G216Afs*17|1|0.16|ENSG00000057593|chr13:113116836-113116836|G/-|frameshift_variant	REV__F7|p.G216Afs*17|1|0.16|ENSG00000057593|chr13:113116836-113116836|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.282470703125	2	463.282526	924.550499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.034	1	12.034	11.534	12.534	0								0	0	0	0.31623	1	2466	2466		31.955	1.4512	1		+		1693	20654	1004	1011	1706	1706					0.0852059974556596
AGVKPPLN	8	Unmodified	_AGVKPPLN_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	398.2390441894531	2	398.239796	794.465038	0.68516	0.00027286	-2.2562	-0.00089851	-1.571	-0.00062565	398.2388069650783	18.278	0.10479	18.278	18.221	18.326	0					4	2	2	0	0	0	0.74117	1	5324	5324		28.254	0	1	407030	+		1694	15002	1005	1012	1707	1707					0.05958434559897796
AGVKVSKY	8	Unmodified	_AGVKVSKY_					0	0	0		ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.2528991699219	2	426.252903	850.491253	0.89561	0.00038176	-0.69015	-0.00029418	0.20546	8.7577E-05	426.25256654236193	14.58	0.090808	14.58	14.536	14.627	0					6	2	3	0	0	0	0.67394	1	3598	3598		37.159	0.13063	1	106500			1695	979	1006	1013	1708	1708					0.06002703731371639
AGVNFAIAK	9	Unmodified	_AGVNFAIAK_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.7579345703125	2	445.758352	889.502152	-0.17051	-7.6007E-05	-0.76288	-0.00034006	-0.9334	-0.00041607	445.75805987837936	32.987	0.28068	32.987	32.885	33.165	0					14	6	4	0	0	0	0.0062933	1	12594	12594		152.47	53.841	1	320220			1696	4248	1007	1014	1709	1709					0.052981061056470935
AGVNFAIAK	9	Unmodified	_AGVNFAIAK_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.7581787109375	2	445.758352	889.502152	0.46702	0.00020818	-0.60409	-0.00026928	-0.13707	-6.11E-05	445.757892372453	32.781	0.13446	32.781	32.703	32.838	0					5	3	2	0	0	0	0.0792	1	11446	11446		84.916	31.564	1	48204			1697	4248	1007	1014	1710	1710					0.052981061056470935
AGVNFAIAK	9	Unmodified	_AGVNFAIAK_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.75762939453125	2	445.758352	889.502152	-0.45465	-0.00020266	-0.35009	-0.00015606	-0.80473	-0.00035872	445.7581622390945	32.991	0.29235	32.991	32.875	33.167	0					8	6	2	0	0	0	0.0011148	1	12497	12497		181.81	71.468	1	321770			1698	4248	1007	1014	1711	1711					0.052981061056470935
AGVPPPAWLPP	11	Unmodified	_AGVPPPAWLPP_					0	0	0		chr15:53523322-53540975|258|15.88|0.17|6.53|-|ENST00000614174|WDR72,WDR72;chr15:53523322-53540662|232|17.27|0.17|6.68|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|100	chr15:53523322-53540975|258|15.88|0.17|6.53|-|ENST00000614174|WDR72,WDR72	chr15:53523322-53540975|258|15.88|0.17|6.53|-|ENST00000614174|WDR72,WDR72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.87298583984375	3	367.874565	1100.60187	0.47931	0.00017633	-3.4918	-0.0012846	-3.0125	-0.0011082	367.8730526973599	26.946	0.1084	26.946	26.879	26.987	0					5	3	2	0	0	0	0.63398	1	8259	8259		33.922	3.6039	1	87327			1699	521	1008	1015	1712	1712					0.05558923719604536
AGVRRLKVSSK	11	Unmodified	_AGVRRLKVSSK_					0	0	0		ENSG00000158258|ENST00000458420|CLSTN2;ENST00000511524.1_1_3:139654198-140275504:+|nuORF	ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.92181396484375	3	400.922689	1199.74624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.822	1	12.822	12.322	13.322	0								0	0	0	0.45674	1	2825	2825		13.508	0.69623	1				1700	5252	1009	1016	1713	1713					0.15435565199595658
AGVRVRTVVSG	11	Unmodified	_AGVRVRTVVSG_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.5576171875	3	367.556007	1099.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.985	1	39.985	39.485	40.485	0								0	0	0	0.43372	1	15745	15745		29.551	5.3189	1				1701	6751	1010	1017	1714	1714					0.10035327865784893
AGVTGKSGL	9	Unmodified	_AGVTGKSGL_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2270812988281	2	395.226885	788.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.193	1	14.193	13.693	14.693	0								0	0	0	0.34228	1	3475	3475		26.796	6.3143	1				1702	7755	1011	1018	1715	1715					0.03653540317623083
AGVVYKAG	8	Unmodified	_AGVVYKAG_					0	0	0			REV__nc|ENSG00000146039|Q9Y2C5-2|SLC17A4	REV__nc|ENSG00000146039|Q9Y2C5-2|SLC17A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.718505859375	2	382.718696	763.422839	-0.13944	-5.3365E-05	0.024083	9.2171E-06	-0.11535	-4.4148E-05	382.71860965682544	22.786	0.2289	22.786	22.694	22.923	0					10	5	3	0	0	0	0.34071	1	6856	6856		77.944	3.9691	1	256660	+		1703	15300	1012	1019	1716	1716					0.031664591515209395
AGVYSATFL	9	Unmodified	_AGVYSATFL_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7442626953125	2	464.742368	927.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.16	1	39.16	38.66	39.66	0								0	0	0	0.30835	1	15454	15454		33.516	1.5607	1				1704	7269	1013	1020	1717	1717					0.003546936318457483
AGWATPAW	8	Unmodified	_AGWATPAW_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.20849609375	2	430.208495	858.402438	-0.5497	-0.00023649	0.64025	0.00027544	0.090548	3.8954E-05	430.20877789953624	16.311	0.22593	16.311	16.225	16.451	0					12	5	3	0	0	0	0.67475	1	4403	4403		37.028	37.028	1	1165700	+		1705	19657	1014	1021	1718	1718					-0.03242711508312368
AGYAQIALKK	10	Unmodified	_AGYAQIALKK_					0	0	0			REV__ENSG00000167720|ENST00000344595|SRR	REV__ENSG00000167720|ENST00000344595|SRR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8194580078125	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.88	1	18.88	18.38	19.38	0								0	0	0	0.16252	1	5601	5601		68.787	5.253	1		+		1706	16211	1015	1022	1719	1719					0.09498308748311501
AGYEKLGYRP	10	Unmodified	_AGYEKLGYRP_					0	0	0		sp|F7V999|US33A_HCMVMUncharacterizedproteinUS33AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US33APE=4SV=1	sp|F7V999|US33A_HCMVMUncharacterizedproteinUS33AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US33APE=4SV=1	sp|F7V999|US33A_HCMVMUncharacterizedproteinUS33AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US33APE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.2038269042969	3	385.204862	1152.59276	0.18558	7.1487E-05	-2.9037	-0.0011185	-2.7182	-0.001047	385.20378768151403	12.362	0.18464	12.362	12.315	12.499	0					5	4	2	0	0	0	0.69544	1	2794	2794		22.58	0.89391	1	92428			1707	22460	1016	1023	1720	1720					0.02256530363274578
AGYEKLKKA	9	Unmodified	_AGYEKLKKA_					0	0	0			REV__nc|ENSG00000162373|Q7L4P6-2|BEND5	REV__nc|ENSG00000162373|Q7L4P6-2|BEND5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53466796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.956	1	39.956	39.456	40.456	0								0	0	0	0.37146	1	13404	13404		26.693	8.3685	1		+		1708	15808	1017	1024	1721	1721					0.07810333339944009
AGYGGSVP	8	Unmodified	_AGYGGSVP_					0	0	0		nc|ENSG00000115598|Q9HB29-2|IL1RL2;ENSG00000115598|ENST00000264257|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.17169189453125	2	354.171579	706.328604	-2.0076	-0.00071103	1.7656	0.00062533	-0.24198	-8.5702E-05	354.1722666851067	20.595	0.13577	20.595	20.508	20.644	0					5	3	2	0	0	0	0.74117	1	5830	5830		28.254	0	1	89675			1709	2924	1018	1025	1722	1722					-0.036306796706185196
AHALVPAPQE	10	Unmodified	_AHALVPAPQE_					0	0	0		ENST00000592262.1_1_19:33604586-33621063:+|nuORF;ENSG00000076650|ENST00000170564|GPATCH1	ENST00000592262.1_1_19:33604586-33621063:+|nuORF	ENST00000592262.1_1_19:33604586-33621063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2711181640625	2	516.777274	1031.53999	0.92556	0.00047831	-0.33658	-0.00017394	0.58898	0.00030437	516.7771687100402	24.369	0.36532	24.369	24.262	24.628	0					17	7	3	0	0	0	0.65213	1	8487	8487		27.882	1.0861	1	676160			1710	1566	1019	1026	1723	1723					0.02548572300474916
AHARGLVL	8	Unmodified	_AHARGLVL_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	418.7587890625	2	418.758687	835.502821	0.030421	1.2739E-05	0.33851	0.00014175	0.36893	0.00015449	418.75869436178084	24.222	0.21358	24.222	24.163	24.377	0					5	4	2	0	0	0	0.74117	1	8462	8462		28.254	1.4582	1	160750	+		1711	21026	1020	1027	1724	1724					0.07848945545379138
AHEPPRPE	8	Unmodified	_AHEPPRPE_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.732666015625	2	466.732866	931.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.267	1	19.267	18.767	19.767	0								0	0	0	1.7419	1	5784	5784		24.203	1.1603	1				1712	8045	1021	1028	1725	1725					-0.017288429391896898
AHEVELQR	8	Unmodified	_AHEVELQR_					0	0	0		ENST00000565166.2_1_15:95399162-95399906:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53	ENST00000565166.2_1_15:95399162-95399906:+|nuORF	ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2591552734375	2	491.259248	980.503943	-0.56347	-0.00027681	0.28793	0.00014145	-0.27554	-0.00013536	491.2594085698679	14.566	0.42105	14.566	14.407	14.828	0					20	8	3	0	0	0	0.66372	1	3639	3639		38.806	3.6054	1	361000			1713	2350	1022	1029	1726	1726					0.012911151236039586
AHFEPTCE	8	Unmodified	_AHFEPTCE_					0	0	0		ENSG00000180815|ENST00000338883|MAP3K15;ENST00000470101.1_1_X:19378869-19390989:-|nuORF;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF	ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.1934509277344	2	467.192185	932.369817	2.6433	0.001235	-0.65452	-0.00030578	1.9888	0.00092917	467.1918005306028	50.38	0.16112	50.38	50.309	50.471	0					19	9	4	0	0	0	0.7914	1	19880	19880		14.664	0.88877	1	381310			1714	6818	1023	1030	1727	1727					-0.09907286693464812
AHFSSKDKL	9	Unmodified	_AHFSSKDKL_					0	0	0		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;ENST00000513084.5_1_5:96245508-96253306:+|nuORF	nc|ENSG00000164308|Q6P179-3|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7774658203125	2	516.777274	1031.53999	4.6266	0.0023909	-3.4158	-0.0017652	1.2109	0.00062575	516.7755713410288	24.131	0.10637	24.131	24.064	24.17	0					5	3	2	0	0	0	0.43426	1	7352	7352		38.806	1.647	1	68575			1715	5682	1024	1031	1728	1728					0.02548572300474916
AHGRRIKK	8	Unmodified	_AHGRRIKK_					0	0	0		CATSPERD|p.R751H|1|0.25|ENSG00000174898|chr19:5778531-5778531|G/A|missense_variant	CATSPERD|p.R751H|1|0.25|ENSG00000174898|chr19:5778531-5778531|G/A|missense_variant	CATSPERD|p.R751H|1|0.25|ENSG00000174898|chr19:5778531-5778531|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.31072998046875	2	483.30941	964.604266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.349	1	33.349	32.849	33.849	0								0	0	0	1.7419	1	11694	11694		25.45	1.2474	1				1716	384	1025	1032	1729	1729					0.12054816967929582
AHIRMTDKK	9	Unmodified	_AHIRMTDKK_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2404174804688	2	550.305675	1098.5968	0.19041	0.00010478	2.0096	0.0011059	2.2	0.0012107	550.3066572842155	11.123	0.068089	11.123	11.058	11.126	0					6	2	3	0	0	0	0.51991	1	2196	2196		30.318	2.4355	1	334360			1717	11590	1026	1033	1730	1730					0.05144296585331176
AHKLLTRVS	9	Unmodified	_AHKLLTRVS_					0	0	0		TRPM2|p.Q702H|1|0.26|ENSG00000142185|chr21:44399339-44399339|G/T|missense_variant	TRPM2|p.Q702H|1|0.26|ENSG00000142185|chr21:44399339-44399339|G/T|missense_variant	TRPM2|p.Q702H|1|0.26|ENSG00000142185|chr21:44399339-44399339|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.21356201171875	3	342.213581	1023.61891	0.50823	0.00017392	-0.54038	-0.00018492	-0.032149	-1.1002E-05	342.21338225481804	17.054	0.17605	17.054	16.969	17.145	0					8	4	3	0	0	0	0.61124	1	4753	4753		25.574	5.5773	1	479290			1718	23070	1027	1034	1731	1731					0.10804844325411977
AHLGTALK	8	Unmodified	_AHLGTALK_					0	0	0		RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant;ENSG00000186468|ENST00000296674|RPS23	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.7451477050781	2	405.745245	809.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.402	1	19.402	18.902	19.902	0								0	0	0	1.7419	1	5848	5848		57.811	2.3071	1				1719	7140	1028	1035	1732	1732					0.06357836934182615
AHLINYGTK	9	Unmodified	_AHLINYGTK_					0	0	0		KIAA0146-ANK1|4|fusion;KIAA0146-ANK1|1|fusion;KIAA0146-ANK1|2|fusion;KIAA0146-ANK1|3|fusion;KIAA0146-ANK1|5|fusion;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-2|ANK1;ANK1|p.L540Sfs*81|1|0.35|ENSG00000029534|chr8:41715060-41715061|-/G|frameshift_variant	KIAA0146-ANK1|4|fusion	KIAA0146-ANK1|4|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.77850341796875	2	508.779816	1015.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.937	1	11.937	11.437	12.437	0								0	0	0	0.40021	1	2408	2408		10.866	2.6343	1				1720	11250	1029	1036	1733	1733					0.03792876163095116
AHLPAPTL	8	Unmodified	_AHLPAPTL_					0	0	0		ENST00000228468.8_1_12:50471894-50472307:+|nuORF	ENST00000228468.8_1_12:50471894-50472307:+|nuORF	ENST00000228468.8_1_12:50471894-50472307:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	410.2395324707031	2	410.239796	818.465038	-2.3015	-0.00094416	1.7538	0.00071947	-0.5477	-0.00022469	410.24073825658775	36.663	0.18502	36.663	36.609	36.794	0					10	8	2	0	0	0	0.57802	1	13128	13128		52.299	2.2746	1	69135			1721	8191	1030	1037	1734	1734					0.04854434559899801
AHLTVACL	8	Carbamidomethyl (C)	_AHLTVAC(Carbamidomethyl (C))L_	AHLTVAC(1)L		AHLTVAC(55)L		0	1	0		sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1;sp|F5HE69|US18_HCMVMTransmembraneproteinUS18OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US18PE=3SV=1	sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1	sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.73712158203125	2	442.736563	883.458573	-0.28968	-0.00012825	0.078738	3.486E-05	-0.21094	-9.3392E-05	442.73678659207474	32.343	0.07423	32.343	32.271	32.345	0					6	3	2	0	0	0	0.55361	1	10446	10446		54.765	12.29	1	60126			1722	22448	1031	1038	1735	1735	754				0.012181733368606729
AHMLTDNHL	9	Unmodified	_AHMLTDNHL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.251953125	2	526.253108	1050.49166	0.60686	0.00031936	-2.8273	-0.0014879	-2.2205	-0.0011685	526.2517150476414	19.85	0.16976	19.85	19.791	19.961	0					8	3	3	0	0	0	0.043797	1	6219	6219		97.473	1.6575	1	482740			1723	2268	1032	1039	1736	1736					-0.03156244611091097
AHNKFVELE	9	Unmodified	_AHNKFVELE_					0	0	0			REV__ENSG00000075223|ENST00000265361|SEMA3C	REV__ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7825927734375	2	543.782556	1085.55056	0.35257	0.00019172	0.15133	8.2289E-05	0.50389	0.00027401	543.7826001661663	35.584	0.49509	35.584	35.334	35.829	0					35	13	4	0	0	0	0.45358	1	13270	13270		37.159	2.0071	1	492060	+		1724	13225	1033	1040	1737	1737					0.011205549548776617
AHNVIHKA	8	Unmodified	_AHNVIHKA_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2535400390625	2	445.253769	888.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.618	1	15.618	15.118	16.118	0								0	0	0	1.7419	1	4306	4306		26.796	2.2769	1		+		1725	17363	1034	1041	1738	1738					0.044277575399860325
AHQLEDRI	8	Unmodified	_AHQLEDRI_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2591857910156	2	491.259248	980.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.356	1	14.356	13.856	14.856	0								0	0	0	1.7419	1	3101	3101		13.775	0.81615	1				1726	1182	1035	1042	1739	1739					0.0129111512359259
AHRPLRPLRL	10	Unmodified	_AHRPLRPLRL_					0	0	0		ENSG00000224940|ENST00000446477|PRRT4	ENSG00000224940|ENST00000446477|PRRT4	ENSG00000224940|ENST00000446477|PRRT4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.2625732421875	3	410.263157	1227.76764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.778	1	13.778	13.278	14.278	0								0	0	0	0.4201	1	3431	3431		20.03	3.3131	1				1727	7865	1036	1043	1740	1740					0.16286995018958805
AHSAHPERR	9	Unmodified	_AHSAHPERR_					0	0	0		KIAA1755|p.R1067H|1|0.29|ENSG00000149633|chr20:38213445-38213445|C/T|missense_variant	KIAA1755|p.R1067H|1|0.29|ENSG00000149633|chr20:38213445-38213445|C/T|missense_variant	KIAA1755|p.R1067H|1|0.29|ENSG00000149633|chr20:38213445-38213445|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.1855773925781	3	354.184684	1059.53222	1.4327	0.00050744	1.0567	0.00037426	2.4894	0.0008817	354.1850417550229	22.982	0.31179	22.982	22.872	23.184	0					13	6	3	0	0	0	0.38666	1	7715	7715		42.864	42.864	1	1449100			1728	11252	1037	1044	1741	1741					0.004838578235649038
AHSLGGLDPA	10	Unmodified	_AHSLGGLDPA_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.73370361328125	2	469.240524	936.466495	-0.12636	-5.9294E-05	-1.1777	-0.00055264	-1.3041	-0.00061194	469.24016871073815	21.483	0.26805	21.483	21.424	21.692	0					11	5	4	0	0	0	0.51121	1	7116	7116		44.117	1.7207	1	301350			1729	2394	1038	1045	1742	1742					-0.004279761420093564
AHTRVHAKL	9	Unmodified	_AHTRVHAKL_					0	0	0			REV__ENST00000398484.6_1_4:1019282-1019474:+|nuORF	REV__ENST00000398484.6_1_4:1019282-1019474:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.8063354492188	2	516.8067	1031.59885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.094	1	25.094	24.594	25.594	0								0	0	0	0.30009	1	8864	8864		27.882	6.1799	1		+		1730	18923	1039	1046	1743	1743					0.08431093385456734
AHVLNDVK	8	Unmodified	_AHVLNDVK_					0	0	0		tr|U7SU32|U7SU32_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01290PE=4SV=1	tr|U7SU32|U7SU32_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01290PE=4SV=1	tr|U7SU32|U7SU32_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01290PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.252685546875	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.762	1	16.762	16.262	17.262	0								0	0	0	1.7419	1	3879	3879		24.203	5.8783	1				1731	22806	1040	1047	1744	1744					0.04084918100284085
AHWLLEALV	9	Unmodified	_AHWLLEALV_					0	0	0		ENST00000584377.5_1_17:80211530-80212190:-|nuORF	ENST00000584377.5_1_17:80211530-80212190:-|nuORF	ENST00000584377.5_1_17:80211530-80212190:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	351.2014465332031	3	351.202682	1050.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.416	1	38.416	37.916	38.916	0								0	0	0	0.3304	1	13744	13744		29.15	1.2673	1				1732	10888	1041	1048	1745	1745					0.06294637202563536
AIAASETLQ	9	Unmodified	_AIAASETLQ_					0	0	0			REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF;REV__NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant	REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.24688720703125	2	452.242732	902.470912	0.67226	0.00030402	-1.267	-0.00057298	-0.59471	-0.00026895	452.24212136674754	23.917	0.80691	23.917	23.565	24.372	0					52	18	4	0	0	0	0.45358	1	7913	7913		37.159	4.3467	1	17041000	+		1733	17286;19767;21285	1042	1049	1746	1746					0.0157748828091826
AIAAVSGSFL	10	Unmodified	_AIAAVSGSFL_					0	0	0			REV__ENST00000373504.10_1_X:72783056-72783248:+|nuORF	REV__ENST00000373504.10_1_X:72783056-72783248:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2635498046875	2	468.263468	934.512382	0.034627	1.6214E-05	0.010517	4.9245E-06	0.045143	2.1139E-05	468.2634564543709	37.134	0.15474	37.134	37.068	37.223	0					12	8	2	0	0	0	0.4943	1	12175	12175		45.952	5.1738	1	69275	+		1734	18685	1043	1050	1747	1747					0.04250669040231969
AIAEAMKVK	9	Unmodified	_AIAEAMKVK_					0	0	0		DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant;nc|ENSG00000276644|Q9UI36-3|DACH1;DACH1|p.T596Nfs*2|1|0.28|ENSG00000276644|chr13:71479252-71479253|-/T|frameshift_variant;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7807922363281	2	480.78097	959.547388	0.07354	3.5357E-05	-0.62087	-0.0002985	-0.54733	-0.00026315	480.78067124302163	22.125	0.23486	22.125	21.979	22.214	0					14	7	3	0	0	0	0.11898	1	6202	6202		75.043	11.737	1	484370			1735	737	1044	1051	1748	1748					0.06599588576534643
AIAEAMKVK	9	Unmodified	_AIAEAMKVK_					0	0	0		DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant;nc|ENSG00000276644|Q9UI36-3|DACH1;DACH1|p.T596Nfs*2|1|0.28|ENSG00000276644|chr13:71479252-71479253|-/T|frameshift_variant;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7808532714844	2	480.78097	959.547388	-0.1562	-7.5096E-05	-0.3524	-0.00016943	-0.50859	-0.00024452	480.7809115877503	22.471	0.19064	22.471	22.371	22.561	0					15	4	4	0	0	0	0.023928	1	7295	7295		115.49	38.72	1	2807600			1736	737	1044	1051	1749	1749					0.06599588576534643
AIAEAMKVK	9	Unmodified	_AIAEAMKVK_					0	0	0		DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant;nc|ENSG00000276644|Q9UI36-3|DACH1;DACH1|p.T596Nfs*2|1|0.28|ENSG00000276644|chr13:71479252-71479253|-/T|frameshift_variant;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7803955078125	2	480.78097	959.547388	-0.31675	-0.00015229	-0.27959	-0.00013442	-0.59634	-0.00028671	480.7808525119196	22.164	0.17163	22.164	22.09	22.261	0					13	5	3	0	0	0	0.035062	1	6471	6471		104.06	18.697	1	502660			1737	737	1044	1051	1750	1750					0.06599588576534643
AIAEAMKVK	9	Unmodified	_AIAEAMKVK_					0	0	0		DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant;nc|ENSG00000276644|Q9UI36-3|DACH1;DACH1|p.T596Nfs*2|1|0.28|ENSG00000276644|chr13:71479252-71479253|-/T|frameshift_variant;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.78070068359375	2	480.78097	959.547388	-0.51821	-0.00024915	-0.097317	-4.6788E-05	-0.61553	-0.00029594	480.78097670789685	22.341	0.21449	22.341	22.237	22.451	0					13	4	4	0	0	0	0.0049871	1	7558	7558		158.07	37.454	1	2767400			1738	737	1044	1051	1751	1751					0.06599588576534643
AIAEGQGHKEA	11	Unmodified	_AIAEGQGHKEA_					0	0	0			REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.7828979492188	2	555.780544	1109.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.63	1	23.63	23.13	24.13	0								0	0	0	0.34471	1	7244	7244		29.17	0	1		+		1739	22025	1045	1052	1752	1752					-0.0038553453880467714
AIAFQFRLHF	10	Unmodified	_AIAFQFRLHF_					0	0	0		LGALS14|p.D49A|1|0.12|ENSG00000006659|chr19:39707231-39707231|A/C|missense_variant	LGALS14|p.D49A|1|0.12|ENSG00000006659|chr19:39707231-39707231|A/C|missense_variant	LGALS14|p.D49A|1|0.12|ENSG00000006659|chr19:39707231-39707231|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.234619140625	3	417.232864	1248.67676	2.7384	0.0011425	1.3941	0.00058165	4.1324	0.0017242	417.23346948767784	25.975	0.36814	25.975	25.866	26.234	0					17	7	4	0	0	0	0.50881	1	9132	9132		44.377	17.33	1	938540			1740	11314	1046	1053	1753	1753					0.06237106250841862
AIALALREK	9	Unmodified	_AIALALREK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.81280517578125	2	492.813659	983.612765	-0.072006	-3.5486E-05	-0.38334	-0.00018891	-0.45534	-0.0002244	492.8134452709207	27.398	0.21498	27.398	27.318	27.533	0					10	7	2	0	0	0	0.15163	1	8421	8421		67.494	3.2864	1	279210			1741	1186	1047	1054	1754	1754					0.12030326093895383
AIALALREK	9	Unmodified	_AIALALREK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.8133239746094	2	492.813659	983.612765	-0.52322	-0.00025785	-0.048191	-2.3749E-05	-0.57141	-0.0002816	492.81357246133507	27.662	0.26092	27.662	27.572	27.833	0					19	6	4	0	0	0	0.035062	1	9676	9676		104.06	32.179	1	1803700			1742	1186	1047	1054	1755	1755					0.12030326093895383
AIALALREK	9	Unmodified	_AIALALREK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.81378173828125	2	492.813659	983.612765	-1.5095	-0.00074391	1.333	0.00065694	-0.17648	-8.6973E-05	492.8143734422276	27.422	0.14992	27.422	27.345	27.495	0					12	5	3	0	0	0	0.028876	1	8721	8721		110.12	25.204	1	131030			1743	1186	1047	1054	1756	1756					0.12030326093895383
AIALALREK	9	Unmodified	_AIALALREK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.8131103515625	2	492.813659	983.612765	-0.74212	-0.00036573	0.60169	0.00029652	-0.14043	-6.9207E-05	492.8138837680808	27.642	0.20802	27.642	27.539	27.747	0					13	4	4	0	0	0	0.016683	1	10025	10025		127.46	39.707	1	1391700			1744	1186	1047	1054	1757	1757					0.12030326093895383
AIALITLIVM	10	Unmodified	_AIALITLIVM_					0	0	0			REV__TTLL2|p.A427*|1|0.08|ENSG00000120440|chr6:167341177-167341178|-/AT|frameshift_variant	REV__TTLL2|p.A427*|1|0.08|ENSG00000120440|chr6:167341177-167341178|-/AT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.2290344238281	3	353.22784	1056.66169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.832	1	19.832	19.332	20.332	0								0	0	0	0.4201	1	5463	5463		18.262	2.6203	1		+		1745	14282	1048	1055	1758	1758					0.13562478338644723
AIALNLIYI	9	Unmodified	_AIALNLIYI_					0	0	0			REV__nc|ENSG00000180616|P30874-2|SSTR2	REV__nc|ENSG00000180616|P30874-2|SSTR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.311279296875	2	502.312961	1002.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.151	1	14.151	13.651	14.651	0								0	0	0	0.3693	1	2871	2871		12.959	0	1		+		1746	16816	1049	1056	1759	1759					0.11016692005114237
AIANFTNQK	9	Unmodified	_AIANFTNQK_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.76922607421875	2	503.769448	1005.52434	0.60465	0.0003046	-0.92859	-0.00046779	-0.32394	-0.00016319	503.7691029960694	25.678	0.14084	25.678	25.615	25.756	0					8	4	2	0	0	0	0.07136	1	7760	7760		87.696	27.578	1	96739			1747	4284	1050	1057	1760	1760					0.021802857834245515
AIANFTNQK	9	Unmodified	_AIANFTNQK_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.76959228515625	2	503.769448	1005.52434	0.75566	0.00038068	-0.66887	-0.00033696	0.086788	4.3721E-05	503.7693391133892	25.961	0.43103	25.961	25.744	26.175	0					15	8	3	0	0	0	0.0071053	1	8907	8907		148.99	66.746	1	616500			1748	4284	1050	1057	1761	1761					0.021802857834245515
AIANFTNQK	9	Unmodified	_AIANFTNQK_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.76934814453125	2	503.769448	1005.52434	-0.8555	-0.00043097	0.95382	0.00048051	0.098321	4.9531E-05	503.7699253787395	25.729	0.1513	25.729	25.62	25.771	0					10	4	3	0	0	0	0.0017279	1	8029	8029		176.09	77.457	1	801390			1749	4284	1050	1057	1762	1762					0.021802857834245515
AIANFTNQK	9	Unmodified	_AIANFTNQK_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7694396972656	2	503.769448	1005.52434	1.0173	0.00051246	-1.1927	-0.00060083	-0.17542	-8.8372E-05	503.7688420090385	25.954	0.4472	25.954	25.738	26.185	0					13	7	4	0	0	0	0.00072198	1	9228	9228		185.72	87.089	1	3311400			1750	4284	1050	1057	1763	1763					0.021802857834245515
AIANFTNQK	9	Unmodified	_AIANFTNQK_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7695007324219	2	503.769448	1005.52434	0.12386	6.2398E-05	-0.074255	-3.7407E-05	0.049607	2.4991E-05	503.76946120231935	25.781	0.22951	25.781	25.687	25.916	0					9	3	4	0	0	0	0.0049871	1	8239	8239		158.07	83.82	1	637860			1751	4284	1050	1057	1764	1764					0.021802857834245515
AIAPIEPCH	9	Unmodified	_AIAPIEPCH_					0	0	0			REV__ENSG00000102195|ENST00000218316|GPR50	REV__ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7410888671875	2	475.741845	949.469137	-0.45658	-0.00021722	-1.3535	-0.00064394	-1.8101	-0.00086115	475.7411107082602	14.053	0.21384	14.053	13.906	14.12	0					7	4	2	0	0	0	0.61124	1	3579	3579		20.482	1.1219	1	173110	+		1752	13627	1051	1058	1765	1765					-0.0076184400869578894
AIAQAESLRYK	11	Unmodified	_AIAQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENST00000487417.1_1_12:62415587-62415818:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.23480224609375	3	417.234822	1248.68264	0.95203	0.00039722	-1.1131	-0.00046442	-0.16106	-6.7201E-05	417.23442319206004	26.026	0.4588	26.026	25.917	26.376	0					24	9	4	0	0	0	0.52595	1	9276	9276		42.338	14.694	1	4037100			1753	4873	1052	1059	1766	1766					0.06824159971824884
AIAQAESLRYK	11	Unmodified	_AIAQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENST00000487417.1_1_12:62415587-62415818:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	625.3488159179688	2	625.348594	1248.68264	0.022235	1.3905E-05	0.51717	0.00032341	0.5394	0.00033732	625.348820577149	26.009	0.26712	26.009	25.901	26.168	0					13	5	4	0	0	0	6.2438E-06	1	9268	9268		167.93	77.563	1	1305100			1754	4873	1052	1059	1767	1767					0.06824159971824884
AIASTLVHK	9	Unmodified	_AIASTLVHK_					0	0	0		nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000090060|ENST00000216277|PAPOLA	nc|ENSG00000090060|P51003-2|PAPOLA	nc|ENSG00000090060|P51003-2|PAPOLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2843933105469	2	470.284734	938.554916	-1.278	-0.00060104	0.43171	0.00020302	-0.84633	-0.00039801	470.28493708708106	22.328	0.21666	22.328	22.228	22.445	0					16	6	4	0	0	0	0.0406	1	6546	6546		98.629	16.389	1	1139500			1755	1828	1053	1060	1768	1768					0.08318064168474848
AIASTLVHK	9	Unmodified	_AIASTLVHK_					0	0	0		nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000090060|ENST00000216277|PAPOLA	nc|ENSG00000090060|P51003-2|PAPOLA	nc|ENSG00000090060|P51003-2|PAPOLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.2845153808594	2	470.284734	938.554916	-0.62329	-0.00029313	-0.011786	-5.5427E-06	-0.63508	-0.00029867	470.2846845544111	22.381	0.19737	22.381	22.29	22.488	0					9	4	3	0	0	0	0.055856	1	6645	6645		93.195	18.94	1	806940			1756	1828	1053	1060	1769	1769					0.08318064168474848
AIATLHGKI	9	Unmodified	_AIATLHGKI_					0	0	0		ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3|RBM45	ENSG00000155636|ENST00000286070|RBM45	ENSG00000155636|ENST00000286070|RBM45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2873229980469	2	462.287277	922.560001	-0.80038	-0.00037001	0.15935	7.3665E-05	-0.64104	-0.00029634	462.28731729798164	33.102	0.193	33.102	32.957	33.15	0					11	8	2	0	0	0	0.54267	1	11084	11084		27.882	2.4321	1	36235			1757	5133	1054	1061	1770	1770					0.09562368031083679
AICFPRPL	8	Unmodified	_AICFPRPL_					0	0	0		chr3:170038809-170038915|196|19.47|0.81|4.59|+|2|None,GPR160|1	chr3:170038809-170038915|196|19.47|0.81|4.59|+|2|None,GPR160|1	chr3:170038809-170038915|196|19.47|0.81|4.59|+|2|None,GPR160|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7584533691406	2	458.757298	915.500044	2.5103	0.0011516	-0.26663	-0.00012232	2.2437	0.0010293	458.75736249948056	29.232	0.36568	29.232	29.026	29.392	0					13	7	2	0	0	0	0.61433	1	10700	10700		46.766	46.766	1	497760			1758	531	1055	1062	1771	1771					0.038913540961971194
AICQWERNK	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))QWERNK_	AIC(1)QWERNK		AIC(140)QWERNK		0	1	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.798583984375	2	602.798214	1203.58188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.857	1	21.857	21.357	22.357	0								0	0	0	0.00030372	1	6086	6086		136.27	43.073	1				1759	4392	1056	1063	1772	1772	183				-0.01177195282662069
AICQWERNK	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))QWERNK_	AIC(1)QWERNK		AIC(170)QWERNK		0	1	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.7984008789062	2	602.798214	1203.58188	-0.32644	-0.00019678	0.33475	0.00020178	0.0083053	5.0064E-06	602.7985626528455	22.182	0.50005	22.182	22.061	22.561	0					22	11	4	0	0	0	0.0025054	1	7164	7164		171.53	67.475	1	1966000			1760	4392	1056	1063	1773	1773	183				-0.01177195282662069
AICQWERNK	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))QWERNK_	AIC(1)QWERNK		AIC(150)QWERNK		0	1	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.7985229492188	2	602.798214	1203.58188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.898	1	21.898	21.398	22.398	0								0	0	0	0.0012548	1	6363	6363		145.16	41.099	1				1761	4392	1056	1063	1774	1774	183				-0.01177195282662069
AICQWERNK	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))QWERNK_	AIC(1)QWERNK		AIC(60)QWERNK		0	1	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.201171875	3	402.201235	1203.58188	0.051643	2.0771E-05	-0.95889	-0.00038567	-0.90725	-0.0003649	402.20092628612053	22.079	0.75502	22.079	21.972	22.728	0					40	15	4	0	0	0	0.21263	1	7407	7407		60.118	8.5905	1	2743300			1762	4392	1056	1063	1775	1775	183				-0.01177195282662069
AICQWERNK	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))QWERNK_	AIC(1)QWERNK		AIC(160)QWERNK		0	1	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.7984619140625	2	602.798214	1203.58188	0.33466	0.00020173	-0.76212	-0.0004594	-0.42746	-0.00025767	602.7980661435629	22.069	0.51184	22.069	21.989	22.501	0					30	10	4	0	0	0	0.0049871	1	7415	7415		158.07	54.018	1	1492500			1763	4392	1056	1063	1776	1776	183				-0.01177195282662069
AICQYAIQS	9	Unmodified	_AICQYAIQS_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4;HEATR4|p.A549T|1|0.11|ENSG00000187105|chr14:73509387-73509387|C/T|missense_variant	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7435607910156	2	498.744585	995.474617	-1.2467	-0.00062179	-0.92424	-0.00046096	-2.171	-0.0010828	498.74405635054796	17.146	0.068951	17.146	17.099	17.168	0					4	2	2	0	0	0	0.55379	1	4243	4243		26.693	1.2427	1	129860			1764	7181	1057	1064	1777	1777					-0.023301652168925102
AICRVQVMVV	10	Unmodified	_AICRVQVMVV_					0	0	0		nc|ENSG00000114125|Q9UBF6-4|RNF7	nc|ENSG00000114125|Q9UBF6-4|RNF7	nc|ENSG00000114125|Q9UBF6-4|RNF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2117919921875	3	373.212195	1116.61476	-0.32057	-0.00011964	-0.7571	-0.00028256	-1.0777	-0.0004022	373.211916088803	23.442	0.21643	23.442	23.335	23.552	0					11	4	3	0	0	0	0.536	1	7961	7961		41.427	12.257	1	526650			1765	11488	1058	1065	1778	1778					0.061112955158478144
AICSSTKLLK	10	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))SSTKLLK_	AIC(1)SSTKLLK		AIC(60)SSTKLLK		0	1	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8238525390625	2	560.823366	1119.63218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.216	1	24.216	23.716	24.716	0								0	0	0	0.23484	1	8447	8447		59.931	20.678	1				1766	6453	1059	1066	1779	1779	273				0.07714914322491495
AIDCVKKR	8	Carbamidomethyl (C)	_AIDC(Carbamidomethyl (C))VKKR_	AIDC(1)VKKR		AIDC(58)VKKR		0	1	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2836608886719	2	495.281669	988.548785	2.8369	0.0014051	0.76477	0.00037878	3.6017	0.0017838	495.28215328564585	47.731	0.3106	47.731	47.607	47.917	0					44	17	4	0	0	0	0.52345	1	19010	19010		57.811	15.337	1	758310	+		1767	13113	1060	1067	1780	1780	512				0.0540522266529706
AIDKHAVLN	9	Unmodified	_AIDKHAVLN_					0	0	0			REV__nc|ENSG00000104497|P57768-2|SNX16	REV__nc|ENSG00000104497|P57768-2|SNX16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7796325683594	2	490.779816	979.545079	0.45533	0.00022347	-0.85633	-0.00042027	-0.401	-0.0001968	490.77937120092355	18.824	0.14013	18.824	18.773	18.913	0					8	4	3	0	0	0	0.13519	1	5585	5585		71.296	0	1	963870	+		1768	13728	1061	1068	1781	1781					0.05448876163075056
AIDLFNVLAG	10	Unmodified	_AIDLFNVLAG_					0	0	0			REV__nc|ENSG00000146039|Q9Y2C5-2|SLC17A4	REV__nc|ENSG00000146039|Q9Y2C5-2|SLC17A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7930297851562	2	516.78985	1031.56515	3.2979	0.0017043	2.0004	0.0010338	5.2984	0.0027381	516.7910234088699	44.316	0.15235	44.316	44.227	44.38	0					9	6	2	0	0	0	0.52707	1	17757	17757		42.396	4.5846	1	61844	+		1769	15300	1062	1069	1782	1782					0.05062627103052364
AIDNQIFKQD	10	Unmodified	_AIDNQIFKQD_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.3062133789062	2	596.303852	1190.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.563	1	23.563	23.063	24.063	0								0	0	0	0.3963	1	6837	6837		31.634	8.5918	1				1770	4198	1063	1070	1783	1783					0.0054790529247839
AIDPTRKQK	9	Unmodified	_AIDPTRKQK_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1;ATAD1|p.N66Mfs*2|1|0.25|ENSG00000138138|chr10:87792721-87792721|T/-|frameshift_variant;ATAD1|p.V49*|1|0.28|ENSG00000138138|chr10:87814456-87814456|T/-|frameshift_variant	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.8121337890625	2	528.811648	1055.60874	0.2858	0.00015113	0.63744	0.00033708	0.92324	0.00048822	528.8118546094709	14	0.21663	14	13.857	14.074	0					9	4	3	0	0	0	0.055856	1	3530	3530		93.195	10.955	1	323300			1771	4233	1064	1071	1784	1784					0.08316236600171578
AIFDKSTGK	9	Unmodified	_AIFDKSTGK_					0	0	0		ENST00000582608.5_1_17:80403674-80404562:-|nuORF;ENST00000582395.5_1_17:80403674-80408606:-|nuORF;nc|ENSG00000178927|Q9BQA9-2|CYBC1;ENSG00000178927|ENST00000306645|CYBC1	ENST00000582608.5_1_17:80403674-80404562:-|nuORF	ENST00000582608.5_1_17:80403674-80404562:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7661437988281	2	483.766374	965.518196	-0.59251	-0.00028664	-0.23404	-0.00011322	-0.82655	-0.00039986	483.7665009316836	20.251	0.26719	20.251	20.193	20.46	0					9	5	2	0	0	0	0.032383	1	6417	6417		106.68	53.332	1	417810			1772	6738	1065	1072	1785	1785					0.03405767551907957
AIFGGFKSK	9	Unmodified	_AIFGGFKSK_					0	0	0		ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7737121582031	2	477.774003	953.533452	-0.079272	-3.7874E-05	-0.64265	-0.00030704	-0.72192	-0.00034492	477.7736971862963	28.907	0.28813	28.907	28.78	29.068	0					21	10	3	0	0	0	0.16806	1	9061	9061		65.465	5.1714	1	248320			1773	7975	1066	1073	1786	1786					0.05482679139765878
AIFGGFKSK	9	Unmodified	_AIFGGFKSK_					0	0	0		ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7740783691406	2	477.774003	953.533452	-0.30282	-0.00014468	-0.51689	-0.00024696	-0.81971	-0.00039163	477.7740379741218	29.155	0.76601	29.155	28.719	29.485	0					49	19	5	0	0	0	0.02953	1	10390	10390		109.48	34.962	1	1737500			1774	7975	1066	1073	1787	1787					0.05482679139765878
AIFGGFKSK	9	Unmodified	_AIFGGFKSK_					0	0	0		ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.77374267578125	2	477.774003	953.533452	-0.33047	-0.00015789	-0.1826	-8.7244E-05	-0.51308	-0.00024514	477.7738491650495	28.908	0.29388	28.908	28.813	29.107	0					25	11	3	0	0	0	0.056004	1	9357	9357		93.143	35.332	1	423940			1775	7975	1066	1073	1788	1788					0.05482679139765878
AIFGGFKSK	9	Unmodified	_AIFGGFKSK_					0	0	0		ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	ENSG00000248144|ENST00000515683|ADH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.77386474609375	2	477.774003	953.533452	-0.42418	-0.00020266	-0.0093	-4.4433E-06	-0.43348	-0.0002071	477.7739743516437	29.138	0.81455	29.138	29.037	29.851	0					32	17	3	0	0	0	0.035062	1	10765	10765		104.06	46.246	1	2572200			1776	7975	1066	1073	1789	1789					0.05482679139765878
AIFKDLVGK	9	Unmodified	_AIFKDLVGK_					0	0	0		KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant;KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.802978515625	2	495.80276	989.590967	-0.66878	-0.00033158	0.94143	0.00046676	0.27265	0.00013518	495.80330309913614	33.309	0.2165	33.309	33.199	33.415	0					7	4	2	0	0	0	0.28897	1	12659	12659		51.193	3.5354	1	94013			1777	4237	1067	1074	1790	1790					0.09575521345334437
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.79962158203125	2	510.799163	1019.58377	-0.12241	-6.2526E-05	0.29108	0.00014868	0.16867	8.6158E-05	510.79936996215065	27.465	0.21909	27.465	27.395	27.614	0					13	7	3	0	0	0	0.12278	1	8459	8459		67.494	26.716	1	403840			1778	2984	1068	1075	1791	1791					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.8683776855469	3	340.868534	1019.58377	0.2186	7.4513E-05	-0.38346	-0.00013071	-0.16486	-5.6196E-05	340.86830409642505	27.465	0.10456	27.465	27.395	27.499	0					6	3	2	0	0	0	0.54081	1	8472	8472		28.081	7.1346	1	172620			1779	2984	1068	1075	1792	1792					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7991638183594	2	510.799163	1019.58377	-0.0055977	-2.8593E-06	-0.22817	-0.00011655	-0.23377	-0.00011941	510.7991174095157	27.745	0.351	27.745	27.653	28.004	0					21	8	4	0	0	0	0.015992	1	9719	9719		112.41	41.033	1	2219300			1780	2984	1068	1075	1793	1793					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.8684387207031	3	340.868534	1019.58377	0.51015	0.0001739	-0.72607	-0.00024749	-0.21591	-7.3598E-05	340.8683083591069	27.745	0.35481	27.745	27.61	27.965	0					16	8	3	0	0	0	0.43488	1	9733	9733		38.754	10.871	1	1548000			1781	2984	1068	1075	1794	1794					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.8685302734375	3	340.868534	1019.58377	-0.72384	-0.00024674	0.080579	2.7467E-05	-0.64327	-0.00021927	340.8687233970792	27.507	0.14924	27.507	27.442	27.591	0					13	5	3	0	0	0	0.59223	1	8769	8769		22.58	22.58	1	140130			1782	2984	1068	1075	1795	1795					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.79913330078125	2	510.799163	1019.58377	-0.42773	-0.00021848	0.55654	0.00028428	0.12881	6.5797E-05	510.79916462305715	27.739	0.16394	27.739	27.634	27.798	0					5	3	2	0	0	0	0.37744	1	10094	10094		36.447	0	1	185810			1783	2984	1068	1075	1796	1796					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.7995300292969	2	510.799163	1019.58377	-1.7819	-0.00091019	2.2223	0.0011352	0.44044	0.00022498	510.8004950246386	27.534	0.13294	27.534	27.483	27.616	0					9	3	3	0	0	0	0.13109	1	9024	9024		65.465	28.306	1	230620			1784	2984	1068	1075	1797	1797					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	340.868408203125	3	340.868534	1019.58377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.55	1	27.55	27.05	28.05	0								0	0	0	0.22075	1	9027	9027		47.96	23.44	1				1785	2984	1068	1075	1798	1798					0.07476465473257576
AIFKPVMSK	9	Unmodified	_AIFKPVMSK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7991027832031	2	510.799163	1019.58377	3.071	0.0015687	-2.4729	-0.0012631	0.59815	0.00030554	510.7979218988414	27.686	0.3171	27.686	27.577	27.894	0					18	6	5	0	0	0	0.032181	1	9947	9947		101.25	39.145	1	2433400			1786	2984	1068	1075	1799	1799					0.07476465473257576
AIFQEAVHK	9	Unmodified	_AIFQEAVHK_					0	0	0		IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant;nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.7884521484375	2	521.787641	1041.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.314	1	25.314	24.814	25.814	0								0	0	0	0.24544	1	7605	7605		44.377	5.1244	1				1787	8061	1069	1076	1800	1800					0.04161162680134112
AIFQEAVHK	9	Unmodified	_AIFQEAVHK_					0	0	0		IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant;nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7883911132812	2	521.787641	1041.56073	-1.3184	-0.00068794	1.923	0.0010034	0.60461	0.00031548	521.7890065792881	25.382	0.19227	25.382	25.282	25.474	0					6	4	2	0	0	0	0.44593	1	8094	8094		37.812	6.2817	1	88498			1788	8061	1069	1076	1801	1801					0.04161162680134112
AIFQEAVHK	9	Unmodified	_AIFQEAVHK_					0	0	0		IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant;nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.1941223144531	3	348.194186	1041.56073	-0.04026	-1.4018E-05	-0.096335	-3.3543E-05	-0.13659	-4.7562E-05	348.1941080688165	25.477	0.21905	25.477	25.414	25.633	0					10	4	3	0	0	0	0.37197	1	8935	8935		60.118	24.966	1	494170			1789	8061	1069	1076	1802	1802					0.04161162680134112
AIFQGKLEK	9	Unmodified	_AIFQGKLEK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.3058471679688	2	517.305667	1032.59678	0.37716	0.00019511	-0.0080172	-4.1473E-06	0.36914	0.00019096	517.3055776977147	25.673	0.64038	25.673	25.578	26.219	0					43	18	5	0	0	0	0.0076184	1	7726	7726		131.03	43.335	1	6819400			1790	3069	1070	1077	1803	1803					0.08178619856994374
AIFQGKLEK	9	Unmodified	_AIFQGKLEK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.3056640625	2	517.305667	1032.59678	0.045073	2.3316E-05	0.1491	7.7129E-05	0.19417	0.00010045	517.3055471817871	25.954	1.0731	25.954	25.732	26.805	0					60	23	5	0	0	0	0.0021879	1	8877	8877		158.07	53.328	1	40908000			1791	3069	1070	1077	1804	1804					0.08178619856994374
AIFQGKLEK	9	Unmodified	_AIFQGKLEK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.2062072753906	3	345.206203	1032.59678	0.50394	0.00017396	-0.6656	-0.00022977	-0.16165	-5.5804E-05	345.2059852411686	25.954	1.0685	25.954	25.692	26.76	0					64	22	5	0	0	0	0.11411	1	8878	8878		76.17	19.736	1	28304000			1792	3069	1070	1077	1805	1805					0.08178619856994374
AIFQGKLEK	9	Unmodified	_AIFQGKLEK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.3058471679688	2	517.305667	1032.59678	0.13765	7.1206E-05	0.0023828	1.2326E-06	0.14003	7.2438E-05	517.305579825856	25.691	0.54043	25.691	25.607	26.148	0					34	13	5	0	0	0	0.0055674	1	8010	8010		139.97	41.341	1	6386500			1793	3069	1070	1077	1806	1806					0.08178619856994374
AIFQGKLEK	9	Unmodified	_AIFQGKLEK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.3057250976562	2	517.305667	1032.59678	-0.45892	-0.0002374	1.128	0.00058352	0.66907	0.00034611	517.3062220941426	25.909	1.1411	25.909	25.721	26.862	0					63	21	5	0	0	0	0.0037134	2	9196	9196;9362		148.99	55.791	1	28508000			1794	3069	1070	1077	1807;1808	1807					0.08178619856994374
AIFQGKLEK	9	Unmodified	_AIFQGKLEK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.2062683105469	3	345.206203	1032.59678	0.51951	0.00017934	-0.55682	-0.00019222	-0.037317	-1.2882E-05	345.2059121149167	25.916	0.74071	25.916	25.476	26.217	0					20	8	5	0	0	0	0.15558	1	9219	9219		66.962	1.8047	1	1286400			1795	3069	1070	1077	1809	1809					0.08178619856994374
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	387.9043884277344	3	387.904524	1160.69174	0.55352	0.00021471	-0.58502	-0.00022693	-0.031498	-1.2218E-05	387.90427915697984	21.388	0.41791	21.388	21.276	21.694	0					30	14	4	0	0	0	0.24329	1	5880	5880		74.165	12.474	1	1300300			1796	3069	1071	1078	1810	1810					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.3529663085938	2	581.353148	1160.69174	0.62017	0.00036054	-0.2717	-0.00015795	0.34847	0.00020258	581.3530116286737	21.383	0.22211	21.383	21.306	21.528	0					19	8	4	0	0	0	0.21778	1	5875	5875		74.165	19.389	1	519830			1797	3069	1071	1078	1811	1811					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.353271484375	2	581.353148	1160.69174	-0.021205	-1.2328E-05	0.35797	0.0002081	0.33676	0.00019578	581.3533570925183	21.734	0.43393	21.734	21.641	22.075	0					22	10	4	0	0	0	0.015306	1	6939	6939		117.53	37.071	1	4530700			1798	3069	1071	1078	1812	1812					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.3538208007812	2	581.353148	1160.69174	-0.050164	-2.9163E-05	0.87994	0.00051155	0.82977	0.00048239	581.3536236135207	21.413	0.23472	21.413	21.337	21.571	0					14	7	3	0	0	0	0.062358	1	6150	6150		93.598	24.751	1	562660			1799	3069	1071	1078	1813	1813					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.9043273925781	3	387.904524	1160.69174	0.16379	6.3534E-05	-0.60123	-0.00023322	-0.43744	-0.00016969	387.90427145056043	21.634	0.56055	21.634	21.526	22.086	0					29	11	4	0	0	0	0.21577	1	7188	7188		77.533	8.6871	1	9255700			1800	3069	1071	1078	1814	1814					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.9045104980469	3	387.904524	1160.69174	0.16679	6.4697E-05	0.043807	1.6993E-05	0.21059	8.169E-05	387.9044849113906	21.617	0.16718	21.617	21.558	21.725	0					7	3	3	0	0	0	0.53919	1	7208	7208		41.08	1.0219	1	992980			1801	3069	1071	1078	1815	1815					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.90447998046875	3	387.904524	1160.69174	0.24462	9.4888E-05	-0.32588	-0.00012641	-0.081265	-3.1523E-05	387.9043980672229	21.508	0.29641	21.508	21.406	21.702	0					14	7	3	0	0	0	0.16075	1	6233	6233		84.817	23.126	1	458450			1802	3069	1071	1078	1816	1816					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.9043884277344	3	387.904524	1160.69174	-0.67218	-0.00026074	0.26372	0.0001023	-0.40846	-0.00015844	387.90461431525887	21.645	0.86493	21.645	21.488	22.353	0					46	17	5	0	0	0	0.092915	1	7064	7064		96.665	8.4881	1	9459100			1803	3069	1071	1078	1817	1817					0.11782553328180256
AIFQGKLEKK	10	Unmodified	_AIFQGKLEKK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.9045104980469	3	387.904524	1160.69174	0.52768	0.00020469	-1.0247	-0.00039749	-0.49704	-0.0001928	387.90416715708756	21.628	0.81468	21.628	21.522	22.337	0					43	16	5	0	0	0	0.28855	1	7057	7057		68.626	3.4685	1	15569000			1804	3069	1071	1078	1818	1818					0.11782553328180256
AIFSVYVVN	9	Unmodified	_AIFSVYVVN_					0	0	0		TRAPPC4|p.F32Gfs*15|1|0.07|ENSG00000196655|chr11:119018888-119018889|-/GGTA|frameshift_variant;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4	TRAPPC4|p.F32Gfs*15|1|0.07|ENSG00000196655|chr11:119018888-119018889|-/GGTA|frameshift_variant	TRAPPC4|p.F32Gfs*15|1|0.07|ENSG00000196655|chr11:119018888-119018889|-/GGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2811584472656	2	506.279118	1010.54368	2.9362	0.0014865	0.57096	0.00028907	3.5072	0.0017756	506.2794740001079	45.842	0.19802	45.842	45.767	45.965	0					16	9	2	0	0	0	0.45358	1	18359	18359		37.159	1.5408	1	92234			1805	7389	1072	1079	1819	1819					0.03883242074334703
AIFTKAYQR	9	Unmodified	_AIFTKAYQR_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.3092041015625	2	549.308741	1096.60293	0.24735	0.00013587	0.53472	0.00029372	0.78207	0.0004296	549.3090357201421	25.081	0.21444	25.081	24.974	25.188	0					7	4	2	0	0	0	0.10915	1	8849	8849		77.318	22.541	1	369920			1806	2958;11379	1073	1080	1820	1820					0.05849138088501604
AIGGLYRL	8	Unmodified	_AIGGLYRL_					0	0	0			REV__NAALAD2|p.Q563Tfs*14|1|0.14|ENSG00000077616|chr11:90177939-90177940|-/A|frameshift_variant	REV__NAALAD2|p.Q563Tfs*14|1|0.14|ENSG00000077616|chr11:90177939-90177940|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.7604675292969	2	431.760895	861.507237	0.99072	0.00042775	-1.6098	-0.00069503	-0.61903	-0.00026728	431.76012885580184	37.266	0.20115	37.266	37.191	37.392	0					8	6	2	0	0	0	0.68754	1	14576	14576		35.201	0	1	154740	+		1807	13265	1074	1081	1821	1821					0.07094409968271975
AIGGVFKTK	9	Unmodified	_AIGGVFKTK_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.78155517578125	2	460.781828	919.549102	-0.15141	-6.9767E-05	-0.51366	-0.00023669	-0.66507	-0.00030645	460.78165301921194	28.441	0.50356	28.441	28.291	28.795	0					18	10	3	0	0	0	0.41113	1	10482	10482		40.778	0.71999	1	290650	+		1808	16441	1075	1082	1822	1822					0.08610965656794178
AIGTLGIVLAN	11	Unmodified	_AIGTLGIVLAN_					0	0	0		tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.3184814453125	2	521.318774	1040.623	1.7334	0.00090367	-4.0967	-0.0021357	-2.3633	-0.001232	521.3167970207373	39.034	0.29987	39.034	38.866	39.166	0					16	10	2	0	0	0	0.49805	1	15367	15367		44.377	0	1	83282			1809	22679	1076	1083	1823	1823					0.10430889028452839
AIHDNFSI	8	Unmodified	_AIHDNFSI_					0	0	0		ENST00000489113.2_1_3:143222453-143222699:-|nuORF	ENST00000489113.2_1_3:143222453-143222699:-|nuORF	ENST00000489113.2_1_3:143222453-143222699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7294921875	2	458.729792	915.445031	-0.41636	-0.000191	-0.20948	-9.6094E-05	-0.62584	-0.00028709	458.7297102020526	24.815	0.31494	24.815	24.605	24.92	0					18	9	3	0	0	0	0.59411	1	7344	7344		50.025	4.0726	1	163040			1810	10053	1077	1084	1824	1824					-0.016073611707156488
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8175659179688	2	557.816399	1113.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.181	1	38.181	37.681	38.681	0								0	0	0	0.39264	1	12883	12883		32.751	2.4328	1				1811	5010	1078	1085	1825	1825					0.06598004885699993
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8164672851562	2	557.816399	1113.61824	1.7336	0.00096704	-1.4209	-0.00079261	0.3127	0.00017443	557.8152574763773	38.39	0.40649	38.39	38.195	38.601	0					29	14	3	0	0	0	0.09653	1	15055	15055		96.034	35.915	1	403010			1812	5010	1078	1085	1826	1826					0.06598004885699993
AIIENMSTK	9	Unmodified	_AIIENMSTK_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7657470703125	2	503.765517	1005.51648	0.60513	0.00030485	0.28019	0.00014115	0.88533	0.000446	503.7656067842376	27.157	0.19137	27.157	27.067	27.258	0					11	7	2	0	0	0	0.15558	1	8336	8336		66.962	15.769	1	173420			1813	2998	1079	1086	1827	1827					0.013943904716597899
AIIENMSTK	9	Unmodified	_AIIENMSTK_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7655334472656	2	503.765517	1005.51648	0.75735	0.00038153	-0.89161	-0.00044916	-0.13426	-6.7637E-05	503.76525508336266	27.423	0.3405	27.423	27.335	27.676	0					17	8	3	0	0	0	0.090954	1	9570	9570		81.525	24.804	1	1467600			1814	2998	1079	1086	1828	1828					0.013943904716597899
AIIENMSTK	9	Unmodified	_AIIENMSTK_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7652282714844	2	503.765517	1005.51648	0.085435	4.3039E-05	-0.53402	-0.00026902	-0.44858	-0.00022598	503.76522441769885	27.43	0.21766	27.43	27.321	27.539	0					10	4	3	0	0	0	0.019258	1	9923	9923		123.21	59.001	1	585340			1815	2998	1079	1086	1829	1829					0.013943904716597899
AIIENMSTK	9	Unmodified	_AIIENMSTK_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.76617431640625	2	503.765517	1005.51648	0.12517	6.3058E-05	1.027	0.00051739	1.1522	0.00058045	503.766067281491	27.21	0.18048	27.21	27.164	27.345	0					6	4	2	0	0	0	0.21263	1	8880	8880		60.118	7.8191	1	175350			1816	2998	1079	1086	1830	1830					0.013943904716597899
AIIENMSTK	9	Unmodified	_AIIENMSTK_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7654113769531	2	503.765517	1005.51648	-0.41734	-0.00021024	-0.24594	-0.0001239	-0.66328	-0.00033414	503.7655580378399	27.365	0.27121	27.365	27.255	27.526	0					11	5	3	0	0	0	0.022698	1	9796	9796		117.53	32.365	1	1151200			1817	2998	1079	1086	1831	1831					0.013943904716597899
AIIENMSTK	9	Unmodified	_AIIENMSTK_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.765380859375	2	503.765517	1005.51648	1.1913	0.00060014	-1.8011	-0.00090733	-0.6098	-0.0003072	503.76486677069374	27.35	0.2205	27.35	27.238	27.459	0					12	4	4	0	0	0	0.14578	1	9792	9792		68.846	21.189	1	1088400			1818	2998	1079	1086	1832	1832					0.013943904716597899
AIIIYQTHK	9	Unmodified	_AIIIYQTHK_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.819580078125	2	543.818941	1085.62333	0.32239	0.00017532	0.1562	8.4943E-05	0.47858	0.00026026	543.8192625341673	26.257	0.15792	26.257	26.151	26.309	0					5	3	2	0	0	0	0.1424	1	9385	9385		69.628	25.511	1	154920			1819	2781	1080	1087	1833	1833					0.08394308748302137
AIILHQFA	8	Unmodified	_AIILHQFA_					0	0	0		ENSG00000146267|ENST00000389677|FAXC	ENSG00000146267|ENST00000389677|FAXC	ENSG00000146267|ENST00000389677|FAXC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7682800292969	2	456.76872	911.522887	-0.58833	-0.00026873	-0.15905	-7.2651E-05	-0.74739	-0.00034138	456.76857223271975	21.751	0.16674	21.751	21.642	21.809	0					5	3	2	0	0	0	0.79176	1	7271	7271		21.702	0	1	84082			1820	4722	1081	1088	1834	1834					0.06358696485324344
AIISVTKSK	9	Unmodified	_AIISVTKSK_					0	0	0		ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.8001708984375	2	473.800217	945.585882	-0.28989	-0.00013735	-0.14476	-6.8586E-05	-0.43464	-0.00020593	473.80006917025304	20.949	0.16022	20.949	20.868	21.028	0					6	4	2	0	0	0	0.21263	1	5697	5697		60.118	5.3419	1	128550			1821	2333	1082	1089	1835	1835					0.11091217482703541
AIISVTKSK	9	Unmodified	_AIISVTKSK_					0	0	0		ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.80035400390625	2	473.800217	945.585882	-0.5076	-0.0002405	0.43735	0.00020722	-0.070255	-3.3287E-05	473.8004632459455	21.306	0.27045	21.306	21.204	21.474	0					11	6	3	0	0	0	0.063171	1	6759	6759		90.601	5.44	1	670640			1822	2333	1082	1089	1836	1836					0.11091217482703541
AIITPPPAK	9	Unmodified	_AIITPPPAK_					0	0	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000506532.5_1_5:134705062-134724783:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2838134765625	2	454.284203	906.553853	-0.56181	-0.00025522	0.29009	0.00013178	-0.27172	-0.00012344	454.28428997991364	26.334	1.5246	26.334	25.362	26.886	0					100	34	4	0	0	0	0.25716	1	8842	8842		54.776	0.01164	1	1970200			1823	2818	1083	1090	1837	1837					0.0968384979955772
AIITPPPAK	9	Unmodified	_AIITPPPAK_					0	0	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000506532.5_1_5:134705062-134724783:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2841491699219	2	454.284203	906.553853	-1.1087	-0.00050368	0.22158	0.00010066	-0.88716	-0.00040302	454.28447230294375	26.056	1.1063	26.056	25.27	26.376	0					52	32	3	0	0	0	0.22377	1	8076	8076		58.782	10.866	1	197170			1824	2818	1083	1090	1838	1838					0.0968384979955772
AIITPPPAK	9	Unmodified	_AIITPPPAK_					0	0	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000506532.5_1_5:134705062-134724783:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2840576171875	2	454.284203	906.553853	-0.47716	-0.00021677	0.15202	6.9059E-05	-0.32514	-0.00014771	454.2842206913817	26.3	1.3859	26.3	25.476	26.862	0					70	26	4	0	0	0	0.16002	2	9315	9315;9481		66.429	13.078	1	1025900			1825	2818	1083	1090	1839;1840	1839					0.0968384979955772
AIITPPPAKK	10	Unmodified	_AIITPPPAKK_					0	0	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000506532.5_1_5:134705062-134724783:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.3327026367188	2	518.331685	1034.64882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.247	1	21.247	20.747	21.747	0								0	0	0	0.38093	1	5822	5822		39.253	9.4113	1				1826	2818	1084	1091	1841	1841					0.13287783270743603
AIIVGSIITK	10	Unmodified	_AIIVGSIITK_					0	0	0		ENSG00000112578|ENST00000230340|BYSL	ENSG00000112578|ENST00000230340|BYSL	ENSG00000112578|ENST00000230340|BYSL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8316955566406	2	507.831517	1013.64848	-0.38125	-0.00019361	0.79976	0.00040614	0.41851	0.00021253	507.8317698513571	39.323	0.15907	39.323	39.237	39.397	0					7	5	2	0	0	0	0.4758	1	15468	15468		47.96	7.1814	1	112300			1827	2748	1085	1092	1842	1842					0.1422036355089631
AIIVSTRPL	9	Unmodified	_AIIVSTRPL_					0	0	0			REV__ENSG00000119514|ENST00000375011|GALNT12	REV__ENSG00000119514|ENST00000375011|GALNT12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.3086242675781	2	485.30821	968.601866	-0.76789	-0.00037267	0.53554	0.0002599	-0.23235	-0.00011276	485.308538058142	36.709	0.24929	36.709	36.603	36.852	0					25	13	3	0	0	0	0.2873	1	12423	12423		51.335	0.14276	1	300120	+		1828	14245	1086	1093	1843	1843					0.11630923719599195
AIKAIKKMGY	10	Unmodified	_AIKAIKKMGY_					0	0	0		tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.89508056640625	3	374.894972	1121.66309	0.30924	0.00011593	-0.45804	-0.00017172	-0.14879	-5.5781E-05	374.89495243931725	18.637	0.25527	18.637	18.547	18.803	0					14	6	3	0	0	0	0.64162	1	5516	5516		29.17	2.1227	1	473990			1829	22872	1087	1094	1844	1844					0.10712112427404463
AIKIDSPLY	9	Unmodified	_AIKIDSPLY_					0	0	0			REV__tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	REV__tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2923583984375	2	510.292225	1018.5699	0.28389	0.00014487	0.53097	0.00027095	0.81486	0.00041582	510.29245012803443	37.593	0.2976	37.593	37.468	37.766	0					32	14	3	0	0	0	0.24095	1	13437	13437		56.721	4.4219	1	279620	+		1830	22167	1088	1095	1845	1845					0.06135511245804537
AIKITYNKG	9	Unmodified	_AIKITYNKG_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.338	1	42.338	41.838	42.838	0								0	0	0	0.37146	1	13963	13963		19.997	1.7347	1		+		1831	15836	1089	1096	1846	1846					0.07810333339944009
AIKITYNKG	9	Unmodified	_AIKITYNKG_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.331	1	28.331	27.831	28.831	0								0	0	0	0.36266	1	10367	10367		22.58	0	1		+		1832	15836	1089	1096	1847	1847					0.07810333339944009
AIKITYNKG	9	Unmodified	_AIKITYNKG_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5338134765625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.879	1	33.879	33.379	34.379	0								0	0	0	0.31623	1	13006	13006		31.53	15.523	1		+		1833	15836	1089	1096	1848	1848					0.07810333339944009
AIKKNNPRK	9	Unmodified	_AIKKNNPRK_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.8364868164062	2	534.835457	1067.65636	1.7877	0.00095611	-0.039366	-2.1054E-05	1.7483	0.00093505	534.835608031812	10.969	0.061112	10.969	10.934	10.995	0					7	3	3	0	0	0	0.1115	1	2147	2147		76.774	15.802	1	156990			1834	1316	1090	1097	1849	1849					0.12523935591025293
AIKKNNPRK	9	Unmodified	_AIKKNNPRK_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8362426757812	2	534.835457	1067.65636	1.8516	0.00099029	-0.069989	-3.7433E-05	1.7816	0.00095286	534.835467067239	10.973	0.069669	10.973	10.939	11.008	0					6	4	2	0	0	0	0.24095	1	2093	2093		56.721	17.468	1	27758			1835	1316	1090	1097	1850	1850					0.12523935591025293
AIKKNNPRK	9	Unmodified	_AIKKNNPRK_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8363647460938	2	534.835457	1067.65636	3.3739	0.0018045	-1.8095	-0.00096777	1.5644	0.00083669	534.8342714560692	10.984	0.053694	10.984	10.949	11.003	0					6	3	2	0	0	0	0.47038	1	2091	2091		35.618	1.4457	1	57209			1836	1316	1090	1097	1851	1851					0.12523935591025293
AIKQREALE	9	Unmodified	_AIKQREALE_					0	0	0		KCNB1|p.R432Q|1|0.28|ENSG00000158445|chr20:49374265-49374265|C/T|missense_variant	KCNB1|p.R432Q|1|0.28|ENSG00000158445|chr20:49374265-49374265|C/T|missense_variant	KCNB1|p.R432Q|1|0.28|ENSG00000158445|chr20:49374265-49374265|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.3043823242188	2	529.303655	1056.59276	-1.1743	-0.00062156	2.1591	0.0011428	0.98477	0.00052124	529.3050361637789	16.738	0.14861	16.738	16.657	16.806	0					9	5	2	0	0	0	0.55379	1	4038	4038		26.693	2.1737	1	72183			1837	11243	1091	1098	1852	1852					0.06672530363289297
AILAAIKC	8	Unmodified	_AILAAIKC_					0	0	0			REV__ENSG00000169330|ENST00000305428|MINAR1	REV__ENSG00000169330|ENST00000305428|MINAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.746826171875	2	401.746399	801.478245	3.4571	0.0013889	-2.5532	-0.0010257	0.90399	0.00036317	401.74506821720234	32.626	0.12166	32.626	32.526	32.648	0					7	5	2	0	0	0	0.59916	1	10899	10899		49.211	10.189	1	27523	+		1838	16308	1092	1099	1853	1853					0.0695654934763752
AILAFYSAY	9	Unmodified	_AILAFYSAY_					0	0	0			REV__nc|ENSG00000117479|O60779-2|SLC19A2	REV__nc|ENSG00000117479|O60779-2|SLC19A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7645568847656	2	509.765843	1017.51713	-0.012626	-6.4363E-06	-4.038	-0.0020584	-4.0506	-0.0020649	509.765198839891	33.283	0.35669	33.283	33.141	33.497	0					26	9	4	0	0	0	0.21116	1	12328	12328		60.294	11.083	1	203780	+		1839	14194	1093	1100	1854	1854					0.009075531829921601
AILAVYSYPP	10	Unmodified	_AILAVYSYPP_					0	0	0			REV__ENSG00000183770|ENST00000648323|FOXL2	REV__ENSG00000183770|ENST00000648323|FOXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.20159912109375	3	365.202459	1092.58555	0.83814	0.00030609	-4.1522	-0.0015164	-3.3141	-0.0012103	365.2011660487529	23.981	0.10893	23.981	23.932	24.041	0					4	2	2	0	0	0	0.68774	1	8028	8028		23.523	1.5628	1	45353	+		1840	16952	1094	1101	1855	1855					0.04295797762847542
AILDKNFRK	9	Unmodified	_AILDKNFRK_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.88897705078125	3	368.888986	1103.64513	0.9006	0.00033222	-1.0268	-0.00037876	-0.12616	-4.6541E-05	368.88858518861946	22.13	0.61839	22.13	21.97	22.589	0					23	12	4	0	0	0	0.17854	1	7302	7302		64.207	5.4253	1	1950800			1841	3094	1095	1102	1856	1856					0.09745113496887825
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.29248046875	2	502.292756	1002.57096	-0.045564	-2.2887E-05	-1.6425	-0.00082501	-1.688	-0.00084789	502.29253013303605	17.908	0.20678	17.908	17.83	18.037	0					9	5	3	0	0	0	0.029172	1	4357	4357		93.598	44.156	1	242660			1842	1555	1096	1103	1857	1857					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2926025390625	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.216	1	18.216	17.716	18.716	0								0	0	0	0.012769	1	5286	5286		146.79	78.301	1				1843	1555	1096	1103	1858	1858					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2926330566406	2	502.292756	1002.57096	-0.92101	-0.00046262	0.29905	0.00015021	-0.62196	-0.00031241	502.29300063085793	17.916	0.26946	17.916	17.831	18.101	0					14	7	3	0	0	0	0.031595	1	4578	4578		101.46	52.018	1	687170			1844	1555	1096	1103	1859	1859					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2926025390625	2	502.292756	1002.57096	0.97586	0.00049017	-1.8272	-0.00091777	-0.8513	-0.0004276	502.29201124250295	18.193	0.27262	18.193	18.088	18.361	0					12	5	3	0	0	0	0.001287	1	5530	5530		164.46	94.827	1	2699200			1845	1555	1096	1103	1860	1860					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2928466796875	2	502.292756	1002.57096	0.13781	6.9223E-05	0.037366	1.8769E-05	0.17518	8.7992E-05	502.29267592773954	17.961	0.1547	17.961	17.863	18.018	0					7	3	3	0	0	0	0.024312	1	4599	4599		109.48	60.037	1	499430			1846	1555	1096	1103	1861	1861					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2925109863281	2	502.292756	1002.57096	-2.076	-0.0010428	1.2668	0.00063631	-0.80921	-0.00040646	502.2934542397653	17.964	0.25866	17.964	17.891	18.15	0					8	5	3	0	0	0	0.031595	1	4594	4594		101.46	24.142	1	477890			1847	1555	1096	1103	1862	1862					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.29278564453125	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.142	1	18.142	17.642	18.642	0								0	0	0	0.0074061	1	5372	5372		152.06	82.433	1				1848	1555	1096	1103	1863	1863					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2927551269531	2	502.292756	1002.57096	2.9261	0.0014698	-3.7081	-0.0018626	-0.78201	-0.0003928	502.2910814705423	18.15	0.46196	18.15	18.044	18.506	0					17	9	3	0	0	0	0.0031197	1	5386	5386		164.46	58.04	1	4920700			1849	1555	1096	1103	1864	1864					0.06977725614717656
AILDNKVI	8	Unmodified	_AILDNKVI_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.273193359375	2	443.273835	884.533118	-0.24769	-0.00010979	-0.45452	-0.00020148	-0.70221	-0.00031127	443.2735957850147	36.511	0.12519	36.511	36.394	36.52	0					6	3	2	0	0	0	0.27512	1	14202	14202		90.777	0.40684	1	71671	+		1850	20919	1097	1104	1865	1865					0.08623259419891838
AILEKRSKL	9	Unmodified	_AILEKRSKL_					0	0	0		DCDC1|p.F176Lfs*20|1|0.2|ENSG00000170959|chr11:30920862-30920862|A/-|frameshift_variant	DCDC1|p.F176Lfs*20|1|0.2|ENSG00000170959|chr11:30920862-30920862|A/-|frameshift_variant	DCDC1|p.F176Lfs*20|1|0.2|ENSG00000170959|chr11:30920862-30920862|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.2289123535156	3	353.229119	1056.66553	0.31938	0.00011281	-0.74188	-0.00026205	-0.4225	-0.00014924	353.22883326323273	19.936	0.27024	19.936	19.826	20.096	0					9	5	2	0	0	0	0.36892	1	6395	6395		44.377	6.5657	1	309620			1851	747	1098	1105	1866	1866					0.13946284156691036
AILEKSRLK	9	Unmodified	_AILEKSRLK_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6;PRPF6|p.R763W|1|0.09|ENSG00000101161|chr20:64027684-64027684|C/T|missense_variant	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.34033203125	2	529.340041	1056.66553	0.11193	5.9252E-05	0.54357	0.00028773	0.6555	0.00034698	529.3403195721695	20.059	0.19863	20.059	19.954	20.153	0					6	4	2	0	0	0	0.029571	1	6170	6170		93.143	10.903	1	577190			1852	2095	1099	1106	1867	1867					0.13946284156691036
AILEKSRLK	9	Unmodified	_AILEKSRLK_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6;PRPF6|p.R763W|1|0.09|ENSG00000101161|chr20:64027684-64027684|C/T|missense_variant	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.3402099609375	2	529.340041	1056.66553	0.28617	0.00015148	0.55499	0.00029378	0.84115	0.00044526	529.3402662802051	19.953	0.16859	19.953	19.843	20.011	0					5	3	2	0	0	0	0.38666	1	6406	6406		35.618	0	1	228570			1853	2095	1099	1106	1868	1868					0.13946284156691036
AILKDVQCE	9	Unmodified	_AILKDVQCE_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7635498046875	2	509.765517	1017.51648	-1.8298	-0.00093277	-1.3215	-0.00067367	-3.1513	-0.0016064	509.7650679879898	33.144	0.22774	33.144	33.024	33.251	0					16	7	3	0	0	0	0.39215	1	11582	11582		42.396	4.5846	1	286510			1854	11814	1100	1107	1869	1869					0.008423904716323705
AILLPQPLK	9	Unmodified	_AILLPQPLK_					0	0	0		AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|13|2|anti-sense;nc|ENSG00000169087|Q96EW2-2|HSPBAP1;ENST00000467643.5_1_3:122474254-122512599:-|nuORF	AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|13|2|anti-sense	AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|13|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.8289489746094	2	496.828778	991.643003	-0.33273	-0.00016531	0.2837	0.00014095	-0.049031	-2.436E-05	496.82889922509275	41.268	0.29809	41.268	41.091	41.389	0					23	14	2	0	0	0	0.18605	1	15674	15674		63.306	5.495	1	71979			1855	135	1101	1108	1870	1870					0.14684684759072297
AILLPQPLK	9	Unmodified	_AILLPQPLK_					0	0	0		AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|13|2|anti-sense;nc|ENSG00000169087|Q96EW2-2|HSPBAP1;ENST00000467643.5_1_3:122474254-122512599:-|nuORF	AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|13|2|anti-sense	AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|13|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.8284606933594	2	496.828778	991.643003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.253	1	41.253	40.753	41.753	0								0	0	0	0.16876	1	16222	16222		55.504	9.532	1				1856	135	1101	1108	1871	1871					0.14684684759072297
AILLPQPPK	9	Unmodified	_AILLPQPPK_					0	0	0		ENST00000591166.1_1_17:42259005-42263988:-|nuORF;ENST00000585457.5_1_17:42259005-42264009:-|nuORF;ENST00000437681.1_1_1:28835797-28835884:+|nuORF;AluY_dup64372|chr11:882046-882337:+|1.6672929492750446|0.3489879065155246|2.26|478.0|12|1|anti-sense;AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|18|3|anti-sense;AluSp_dup17164|chr6:42889159-42889460:+|1.1128196386926228|0.1877517114460719|2.57|474.0|18|3|anti-sense;AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|18|3|anti-sense;ENST00000483835.5_1_11:5685320-5686489:-|nuORF;ENST00000608290.1_1_22:46409584-46410459:+|nuORF;ENST00000567741.1_1_1:25644693-25663698:-|nuORF;ENST00000518164.5_1_8:99037863-99057595:-|nuORF;nc|ENSG00000137090|Q9Y5R6-3|DMRT1;ENST00000496007.5_1_1:1324344-1326370:-|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000204370|O14521-4|SDHD	ENST00000591166.1_1_17:42259005-42263988:-|nuORF;nc|ENSG00000204370|O14521-4|SDHD	nc|ENSG00000204370|O14521-4|SDHD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.81317138671875	2	488.813128	975.611703	-0.41055	-0.00020068	-0.02347	-1.1472E-05	-0.43402	-0.00021215	488.81310365070624	36.622	2.4322	36.622	34.6	37.032	0					136	65	3	0	0	0	0.099922	2	13801	13485;13801		79.451	8.1716	1	1572700			1857	10896;11721	1102	1109	1872;1873	1873					0.12292111724991628
AILLPQPSLV	10	Unmodified	_AILLPQPSLV_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-6|MTO1	nc|ENSG00000135297|Q9Y2Z2-6|MTO1	nc|ENSG00000135297|Q9Y2Z2-6|MTO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8331909179688	2	525.831517	1049.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.27	1	25.27	24.77	25.77	0								0	0	0	0.40002	1	8010	8010		30.504	0.6621	1				1858	11535	1103	1110	1874	1874					0.12564363550882263
AILMIFGVAGL	11	Unmodified	_AILMIFGVAGL_					0	0	0			REV__tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	REV__tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.888916015625	3	368.887706	1103.64129	-0.21865	-8.0658E-05	3.2138	0.0011855	2.9951	0.0011049	368.88877023282447	22.097	0.31551	22.097	22.037	22.353	0					12	6	3	0	0	0	0.70609	1	7310	7310		27.047	2.5281	1	1063500	+		1859	21807	1104	1111	1875	1875					0.09361307678818775
AILNNEKLAL	10	Unmodified	_AILNNEKLAL_					0	0	0		ZDHHC11|p.V23A|1|0.43|ENSG00000188818|chr5:850535-850535|A/G|missense_variant	ZDHHC11|p.V23A|1|0.43|ENSG00000188818|chr5:850535-850535|A/G|missense_variant	ZDHHC11|p.V23A|1|0.43|ENSG00000188818|chr5:850535-850535|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8300170898438	2	549.829506	1097.64446	-1.4605	-0.00080305	2.1252	0.0011685	0.66464	0.00036544	549.8307067259303	21.092	0.28031	21.092	20.966	21.246	0					12	6	2	0	0	0	0.47859	1	6090	6090		47.657	3.2801	1	101930			1860	23133	1105	1112	1876	1876					0.0995427405719056
AILNYIASK	9	Unmodified	_AILNYIASK_					0	0	0		ENSG00000182793|ENST00000370989|GSTA5;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000174156|ENST00000211122|GSTA3;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000182793|ENST00000370989|GSTA5;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7920837402344	2	496.792392	991.570232	-0.69366	-0.00034461	-0.029085	-1.4449E-05	-0.72275	-0.00035906	496.7922319331535	37.277	0.36471	37.277	37.12	37.484	0					9	7	2	0	0	0	0.22837	1	14571	14571		58.23	12.258	1	132160			1861	6921;7964	1106	1113	1877	1877					0.07410930965670559
AILNYIASK	9	Unmodified	_AILNYIASK_					0	0	0		ENSG00000182793|ENST00000370989|GSTA5;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000174156|ENST00000211122|GSTA3;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000182793|ENST00000370989|GSTA5;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7922668457031	2	496.792392	991.570232	0.984	0.00048884	-2.2737	-0.0011295	-1.2897	-0.00064069	496.7917056019833	37.265	0.214	37.265	37.203	37.417	0					13	4	4	0	0	0	0.054723	1	14567	14567		93.598	36.965	1	285700			1862	6921;7964	1106	1113	1878	1878					0.07410930965670559
AILTQFAMF	9	Unmodified	_AILTQFAMF_					0	0	0		tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2800903320312	2	521.275521	1040.53649	1.6254	0.00084729	-0.21971	-0.00011453	1.4057	0.00073276	521.2745228216372	36.308	0.76464	36.308	36.064	36.829	0					48	15	5	0	0	0	0.36892	1	14072	14072		37.159	8.0096	1	1541800			1863	22827	1107	1114	1879	1879					0.017841862022578425
AILTRTTDI	9	Unmodified	_AILTRTTDI_					0	0	0		ENST00000526551.5_1_11:124746819-124748211:+|nuORF	ENST00000526551.5_1_11:124746819-124748211:+|nuORF	ENST00000526551.5_1_11:124746819-124748211:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.1975402832031	3	335.197596	1002.57096	0.65589	0.00021985	-0.77823	-0.00026086	-0.12234	-4.1007E-05	335.1972792865995	18.212	0.22461	18.212	18.128	18.353	0					6	5	2	0	0	0	0.48389	1	5297	5297		34.173	5.0025	1	933040			1864	10377	1108	1115	1880	1880					0.06977725614717656
AILTTVTQK	9	Unmodified	_AILTTVTQK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.79803466796875	2	487.797675	973.580796	-0.0107	-5.2193E-06	-0.34765	-0.00016958	-0.35835	-0.0001748	487.79739867057066	27.813	0.24764	27.813	27.708	27.956	0					16	8	3	0	0	0	0.19605	1	8599	8599		62.107	12.666	1	230220			1865	7584	1109	1116	1881	1881					0.09294913620090028
AILTTVTQK	9	Unmodified	_AILTTVTQK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7975158691406	2	487.797675	973.580796	-0.36356	-0.00017734	0.23411	0.0001142	-0.12946	-6.3148E-05	487.7977590396964	28.078	0.2567	28.078	27.993	28.25	0					16	6	3	0	0	0	0.01873	1	9874	9874		124.08	47.306	1	1244900			1866	7584	1109	1116	1882	1882					0.09294913620090028
AILTTVTQK	9	Unmodified	_AILTTVTQK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7976379394531	2	487.797675	973.580796	-1.2468	-0.00060816	0.80061	0.00039054	-0.44615	-0.00021763	487.7980477538053	27.827	0.29015	27.827	27.762	28.052	0					16	10	3	0	0	0	0.10915	1	8906	8906		77.318	18.536	1	242360			1867	7584	1109	1116	1883	1883					0.09294913620090028
AILTTVTQK	9	Unmodified	_AILTTVTQK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7974853515625	2	487.797675	973.580796	0.62566	0.0003052	-0.97459	-0.0004754	-0.34893	-0.0001702	487.7972283878302	28.05	0.34455	28.05	27.947	28.291	0					16	7	3	0	0	0	0.026538	1	10243	10243		112.41	35.637	1	985130			1868	7584	1109	1116	1884	1884					0.09294913620090028
AILTTVTQK	9	Unmodified	_AILTTVTQK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7976989746094	2	487.797675	973.580796	-0.70471	-0.00034376	0.48112	0.00023469	-0.22359	-0.00010907	487.7978938600403	28.079	0.24425	28.079	27.98	28.224	0					11	5	3	0	0	0	0.085655	1	10233	10233		82.75	35.093	1	363550			1869	7584	1109	1116	1885	1885					0.09294913620090028
AIMAPVPVEQ	10	Unmodified	_AIMAPVPVEQ_					0	0	0			REV__ENST00000480838.1_1_2:163066458-163099837:-|nuORF	REV__ENST00000480838.1_1_2:163066458-163099837:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7882080078125	2	527.78371	1053.55287	5.2438	0.0027676	0.12885	6.8007E-05	5.3727	0.0028356	527.7836745693088	22.208	0.29482	22.208	22.047	22.342	0					13	9	2	0	0	0	0.60281	1	6484	6484		37.159	8.0096	1	82960	+		1870	13270	1110	1117	1886	1886					0.028232673683532994
AIMDPLPLR	9	Unmodified	_AIMDPLPLR_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2955322265625	2	513.294245	1024.57394	1.0988	0.00056398	0.44389	0.00022785	1.5426	0.00079183	513.2945195715262	43.456	0.19548	43.456	43.319	43.514	0					18	11	2	0	0	0	0.0406	1	16373	16373		98.629	45.278	1	70954			1871	2446	1111	1118	1887	1887					0.06263277467860462
AIMDPLPLR	9	Unmodified	_AIMDPLPLR_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7953491210938	2	513.294245	1024.57394	1.2958	0.00066513	-0.34971	-0.00017951	0.9461	0.00048563	513.2939254590763	43.424	0.19032	43.424	43.314	43.504	0					17	10	2	0	0	0	0.41113	1	16979	16979		40.778	0	1	58971			1872	2446	1111	1118	1888	1888					0.06263277467860462
AIMDPLPLR	9	Unmodified	_AIMDPLPLR_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2950439453125	2	513.294245	1024.57394	0.089075	4.5722E-05	0.62151	0.00031902	0.71059	0.00036474	513.294646747268	43.368	0.29272	43.368	43.22	43.512	0					21	11	3	0	0	0	0.30951	1	17335	17335		49.442	8.8689	1	116600			1873	2446	1111	1118	1889	1889					0.06263277467860462
AIMDPLPLR	9	Unmodified	_AIMDPLPLR_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2945556640625	2	513.294245	1024.57394	1.4488	0.00074367	-1.5435	-0.00079229	-0.094719	-4.8619E-05	513.2935333661555	43.346	0.39245	43.346	43.211	43.603	0					33	14	3	0	0	0	0.12239	1	17333	17333		74.255	21.956	1	186210			1874	2446	1111	1118	1890	1890					0.06263277467860462
AIMDPLPLRTK	11	Unmodified	_AIMDPLPLRTK_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.91265869140625	3	418.912803	1253.71658	-0.87168	-0.00036516	0.52865	0.00022146	-0.34302	-0.0001437	418.91306045207955	36.781	0.44419	36.781	36.625	37.069	0					30	12	3	0	0	0	0.4771	1	13874	13874		45.908	16.357	1	482240			1875	2446	1112	1119	1891	1891					0.09986865139217116
AIMDPLPLRTK	11	Unmodified	_AIMDPLPLRTK_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.8657836914062	2	627.865566	1253.71658	-0.048683	-3.0566E-05	0.27105	0.00017018	0.22237	0.00013962	627.8657012875493	36.716	0.33772	36.716	36.625	36.962	0					17	10	2	0	0	0	0.47907	1	14318	14318		29.551	0	1	77969			1876	2446	1112	1119	1892	1892					0.09986865139217116
AIMENANVL	9	Unmodified	_AIMENANVL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7527770996094	2	487.75241	973.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.699	1	42.699	42.199	43.199	0								0	0	0	0.088368	1	17056	17056		75.043	18.322	1				1877	4912	1113	1120	1893	1893					0.0024612130016521405
AIMENANVL	9	Unmodified	_AIMENANVL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.75213623046875	2	487.75241	973.490267	0.80265	0.0003915	-1.6957	-0.0008271	-0.89308	-0.0004356	487.7517067435765	42.625	0.24087	42.625	42.545	42.786	0					15	6	3	0	0	0	0.19605	1	17033	17033		62.107	17.73	1	408900			1878	4912	1113	1120	1894	1894					0.0024612130016521405
AIMESLEPTCY	11	Unmodified	_AIMESLEPTCY_					0	0	0			REV__ENSG00000176887|ENST00000322002|SOX11	REV__ENSG00000176887|ENST00000322002|SOX11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	419.1871032714844	3	419.522763	1255.54646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.726	1	26.726	26.226	27.226	0								0	0	0	0.44926	1	8437	8437		26.063	3.4837	1		+		1879	16675	1114	1121	1895	1895					-0.07109038645307919
AIMKETRKT	9	Unmodified	_AIMKETRKT_					0	0	0		nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	nc|ENSG00000155657|Q8WZ42-3|TTN	nc|ENSG00000155657|Q8WZ42-3|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3058471679688	2	539.307884	1076.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.215	1	29.215	28.715	29.715	0								0	0	0	0.2591	1	10793	10793		42.396	11.892	1				1880	11594	1115	1122	1896	1896					0.06597761008265479
AIMKISSSL	9	Unmodified	_AIMKISSSL_					0	0	0		ENST00000373783.2_1_10:64565811-64565997:+|nuORF	ENST00000373783.2_1_10:64565811-64565997:+|nuORF	ENST00000373783.2_1_10:64565811-64565997:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7734680175781	2	475.272978	948.531403	-0.11986	-5.6967E-05	-0.59436	-0.00028248	-0.71422	-0.00033945	475.27276810444914	33.807	0.33746	33.807	33.69	34.028	0					19	8	3	0	0	0	0.45358	1	13065	13065		37.159	0.13063	1	104270			1881	9001	1116	1123	1897	1897					0.05507882339657044
AINDKSIVK	9	Unmodified	_AINDKSIVK_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.29608154296875	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.515	1	20.515	20.015	21.015	0								0	0	0	0.084509	1	5504	5504		76.17	24.834	1				1882	3714	1117	1124	1898	1898					0.08222029477337855
AINDKSIVK	9	Unmodified	_AINDKSIVK_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.29559326171875	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.6	1	20.6	20.1	21.1	0								0	0	0	0.18645	1	5822	5822		52.937	1.6012	1				1883	3714	1117	1124	1899	1899					0.08222029477337855
AINKCPLLK	9	Carbamidomethyl (C)	_AINKC(Carbamidomethyl (C))PLLK_	AINKC(1)PLLK		AINKC(59)PLLK		0	1	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.8154296875	2	528.815344	1055.61614	0.71738	0.00037936	-0.3754	-0.00019852	0.34198	0.00018084	528.8151685773826	23.739	0.16262	23.739	23.634	23.796	0					5	3	2	0	0	0	0.22377	1	8107	8107		58.782	12.81	1	187570			1884	4912	1118	1125	1900	1900	202				0.09055252876260056
AINSQKAVL	9	Unmodified	_AINSQKAVL_					0	0	0		ENST00000527401.5_1_11:45992606-45992897:-|nuORF;PHF21A|p.N200Tfs*67|2|0.23|ENSG00000135365|chr11:45971129-45971129|T/-|frameshift_variant;nc|ENSG00000135365|Q96BD5-2|PHF21A;PHF21A|p.S665Lfs*10|1|0.08|ENSG00000135365|chr11:45934018-45934019|-/G|frameshift_variant;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45992606-45992897:-|nuORF	ENST00000527401.5_1_11:45992606-45992897:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2818908691406	2	472.282192	942.549831	0.61018	0.00028818	-0.87048	-0.00041111	-0.26031	-0.00012294	472.2818267134963	24.906	0.45936	24.906	24.805	25.264	0					12	9	2	0	0	0	0.28897	1	8661	8661		51.193	6.8155	1	1594600			1885	3987	1119	1126	1901	1901					0.0762576030585933
AINYDVTGAY	10	Unmodified	_AINYDVTGAY_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.759521484375	2	543.758746	1085.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.811	1	37.811	37.311	38.311	0								0	0	0	0.34115	1	14359	14359		44.377	6.5657	1		+		1886	12863	1120	1127	1902	1902					-0.03639144035946629
AIPELHVTK	9	Unmodified	_AIPELHVTK_					0	0	0		ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.26336669921875	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.143	1	48.143	47.643	48.643	0								0	0	0	0.3245	1	19152	19152		30.318	3.6248	1				1887	5769	1121	1128	1903	1903					0.07810333339944009
AIPKAAIT	8	Unmodified	_AIPKAAIT_					0	0	0		USH2A|p.R551Ffs*46|1|0.11|ENSG00000042781|chr1:216292364-216292365|-/ATCACACTAGAACAAAA|frameshift_variant	USH2A|p.R551Ffs*46|1|0.11|ENSG00000042781|chr1:216292364-216292365|-/ATCACACTAGAACAAAA|frameshift_variant	USH2A|p.R551Ffs*46|1|0.11|ENSG00000042781|chr1:216292364-216292365|-/ATCACACTAGAACAAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.74884033203125	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.712	1	49.712	49.212	50.212	0								0	0	0	1.7419	1	18691	18691		25.45	6.0902	1				1888	23093	1122	1129	1904	1904					0.0850360521968696
AIQKGVAEK	9	Unmodified	_AIQKGVAEK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.28179931640625	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.933	1	14.933	14.433	15.433	0								0	0	0	0.088368	1	3748	3748		75.043	8.614	1				1889	4398	1123	1130	1905	1905					0.0762576030585933
AIQKGVAEK	9	Unmodified	_AIQKGVAEK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2818908691406	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.881	1	14.881	14.381	15.381	0								0	0	0	0.10826	1	3802	3802		69.628	3.1983	1				1890	4398	1123	1130	1906	1906					0.0762576030585933
AIQLPISSK	9	Unmodified	_AIQLPISSK_					0	0	0		ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.79217529296875	2	478.792392	955.570232	0.44824	0.00021462	-1.1612	-0.00055597	-0.71294	-0.00034135	478.79180092264653	34.997	0.42881	34.997	34.811	35.24	0					28	11	3	0	0	0	0.095583	1	13077	13077		80.455	0.74203	1	871940			1891	10279	1124	1131	1907	1907					0.09066930965673237
AIQLPISSK	9	Unmodified	_AIQLPISSK_					0	0	0		ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7926025390625	2	478.792392	955.570232	-0.1159	-5.549E-05	-0.047941	-2.2954E-05	-0.16384	-7.8444E-05	478.7922033881819	34.999	0.3233	34.999	34.84	35.163	0					20	9	3	0	0	0	0.27249	1	13514	13514		52.937	1.6012	1	204360			1892	10279	1124	1131	1908	1908					0.09066930965673237
AIQLPISSK	9	Unmodified	_AIQLPISSK_					0	0	0		ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7919616699219	2	478.792392	955.570232	-0.65968	-0.00031585	0.24571	0.00011764	-0.41397	-0.0001982	478.7923826298172	34.939	0.41182	34.939	34.784	35.196	0					22	8	3	0	0	0	0.10915	1	13428	13428		77.318	3.0625	1	697250			1893	10279	1124	1131	1909	1909					0.09066930965673237
AIQNPTMINK	10	Unmodified	_AIQNPTMINK_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.3046875	2	565.305341	1128.59613	1.2169	0.0006879	-1.0266	-0.00058035	0.19025	0.00010755	565.3049469330979	27.199	0.32875	27.199	26.969	27.298	0					28	12	3	0	0	0	0.099683	1	8305	8305		83.647	18.182	1	274820			1894	5976	1125	1132	1910	1910					0.03697457145631233
AIQNPTMINK	10	Unmodified	_AIQNPTMINK_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.3058471679688	2	565.305341	1128.59613	0.30959	0.00017501	-0.54966	-0.00031073	-0.24007	-0.00013572	565.3053266656038	27.415	0.42576	27.415	27.157	27.583	0					39	10	5	0	0	0	0.019305	1	9525	9525		138.06	31.055	1	1544200			1895	5976	1125	1132	1911	1911					0.03697457145631233
AIQNPTMINK	10	Unmodified	_AIQNPTMINK_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.30419921875	2	565.305341	1128.59613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.158	1	27.158	26.658	27.658	0								0	0	0	0.094953	1	8624	8624		78.264	21.83	1				1896	5976	1125	1132	1912	1912					0.03697457145631233
AIQNPTMINK	10	Unmodified	_AIQNPTMINK_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3053588867188	2	565.305341	1128.59613	-0.3496	-0.00019763	0.22063	0.00012472	-0.12897	-7.2908E-05	565.3054462720721	27.179	0.29032	27.179	27.006	27.296	0					18	10	2	0	0	0	0.58996	1	8601	8601		37.508	9.6259	1	118330			1897	5976	1125	1132	1913	1913					0.03697457145631233
AIQNPTMINK	10	Unmodified	_AIQNPTMINK_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.3056030273438	2	565.305341	1128.59613	0.18831	0.00010645	0.22986	0.00012994	0.41818	0.0002364	565.3055845482183	27.447	0.46292	27.447	27.186	27.649	0					21	9	3	0	0	0	0.015306	2	9909	9885;9909		128.6	53.559	1	757490			1898	5976	1125	1132	1914;1915	1915					0.03697457145631233
AIQPNTTGK	9	Unmodified	_AIQPNTTGK_					0	0	0		ENSG00000092820|ENST00000367075|EZR;MSN|p.P297Afs*2|1|0.34|ENSG00000147065|chrX:65735356-65735357|-/A|frameshift_variant;RDX|p.F45Lfs*6|1|0.23|ENSG00000137710|chr11:110264836-110264836|A/-|frameshift_variant;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;nc|ENSG00000137710|P35241-3|RDX;RDX|p.G213Efs*6|1|0.09|ENSG00000137710|chr11:110257829-110257829|T/-|frameshift_variant;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.25579833984375	2	465.256174	928.497795	0.51141	0.00023794	-0.80906	-0.00037642	-0.29765	-0.00013848	465.25598364797895	17.021	0.17629	17.021	16.94	17.117	0					6	4	2	0	0	0	0.28897	1	4740	4740		51.193	1.1592	1	385240			1899	1878;4764;4186	1126	1133	1916	1916					0.03068596892092046
AIQTKPFPAE	10	Unmodified	_AIQTKPFPAE_					0	0	0			REV__ENST00000514104.5_1_5:145522433-145523105:-|nuORF	REV__ENST00000514104.5_1_5:145522433-145523105:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.3017578125	2	551.300581	1100.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.382	1	41.382	40.882	41.882	0								0	0	0	0.39244	1	15729	15729		32.812	3.6629	1		+		1900	14717	1127	1134	1917	1917					0.04034012131751297
AIRIIQERNG	10	Unmodified	_AIRIIQERNG_					0	0	0		ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36	ENSG00000163001|ENST00000349456|CFAP36	ENSG00000163001|ENST00000349456|CFAP36	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3418579101562	2	585.341104	1168.66765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.505	1	42.505	42.005	43.005	0								0	0	0	0.4146	1	16968	16968		27.882	7.8855	1				1901	5520	1128	1135	1918	1918					0.090067128945293
AISAALKPAL	10	Unmodified	_AISAALKPAL_					0	0	0		ENSG00000175336|ENST00000398189|APOF	ENSG00000175336|ENST00000398189|APOF	ENSG00000175336|ENST00000398189|APOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.8018493652344	2	477.80276	953.590967	-1.4743	-0.00070442	0.81954	0.00039158	-0.65475	-0.00031284	477.8029745611184	34.583	0.33049	34.583	34.399	34.729	0					30	14	3	0	0	0	0.47859	1	11634	11634		47.657	1.6851	1	177060			1902	6550	1129	1136	1919	1919					0.11231521345325746
AISAGLIAK	9	Unmodified	_AISAGLIAK_					0	0	0		ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.26837158203125	2	422.268553	842.522553	0.38515	0.00016263	0.0065241	2.7549E-06	0.39167	0.00016539	422.2684991333218	29.579	0.13002	29.579	29.523	29.653	0					6	4	2	0	0	0	0.24095	1	9348	9348		56.721	5.3856	1	64617			1903	7682	1130	1137	1920	1920					0.09499276765461673
AISAGLIAK	9	Unmodified	_AISAGLIAK_					0	0	0		ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.2684326171875	2	422.268553	842.522553	-0.18681	-7.8883E-05	-0.30502	-0.0001288	-0.49183	-0.00020768	422.2684422919785	29.873	0.21152	29.873	29.767	29.978	0					9	4	3	0	0	0	0.0792	1	11096	11096		84.916	0	1	204510			1904	7682	1130	1137	1921	1921					0.09499276765461673
AISAGLIAK	9	Unmodified	_AISAGLIAK_					0	0	0		ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.26849365234375	2	422.268553	842.522553	-0.33842	-0.00014291	-0.030547	-1.2899E-05	-0.36897	-0.0001558	422.26860146007033	29.805	0.31593	29.805	29.698	30.014	0					13	6	3	0	0	0	0.17854	1	10971	10971		64.207	0	1	484420			1905	7682	1130	1137	1922	1922					0.09499276765461673
AISAHVVPIT	10	Unmodified	_AISAHVVPIT_					0	0	0			REV__ENSG00000242372|ENST00000374450|EIF6	REV__ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53448486328125	3	336.53432	1006.58113	0.24134	8.1219E-05	-0.26303	-8.852E-05	-0.021696	-7.3014E-06	336.5341773713489	36.287	0.80146	36.287	35.854	36.655	0					59	40	2	0	0	0	0.73274	1	11931	11931		21.686	5.679	1	129860	+		1906	17695	1131	1138	1923	1923					0.0781033333993264
AISDVIGNK	9	Unmodified	_AISDVIGNK_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.75836181640625	2	458.758549	915.502546	-0.96419	-0.00044233	0.87776	0.00040268	-0.086429	-3.965E-05	458.75890962704705	29.05	0.30968	29.05	28.88	29.19	0					17	12	2	0	0	0	0.22377	1	9418	9418		58.782	5.8453	1	224220			1907	1826	1132	1139	1924	1924					0.041414810348555875
AISDVIGNK	9	Unmodified	_AISDVIGNK_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.75836181640625	2	458.758549	915.502546	0.72212	0.00033128	-1.122	-0.00051473	-0.39988	-0.00018345	458.7581293307486	29.291	0.42007	29.291	29.053	29.473	0					21	9	3	0	0	0	0.032052	1	10838	10838		107.01	35.13	1	1382900			1908	1826	1132	1139	1925	1925					0.041414810348555875
AISDVIGNK	9	Unmodified	_AISDVIGNK_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7584533691406	2	458.758549	915.502546	0.08002	3.671E-05	-0.18284	-8.3878E-05	-0.10282	-4.7168E-05	458.758588452111	29.076	0.30302	29.076	28.967	29.27	0					13	8	3	0	0	0	0.14603	1	9748	9748		68.787	4.5796	1	151310			1909	1826	1132	1139	1926	1926					0.041414810348555875
AISDVIGNK	9	Unmodified	_AISDVIGNK_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7584228515625	2	458.758549	915.502546	0.88004	0.00040373	-0.65425	-0.00030014	0.22579	0.00010358	458.75814724120426	29.246	0.40623	29.246	29.143	29.549	0					14	8	3	0	0	0	0.085655	1	10705	10705		82.75	10.873	1	901670			1910	1826	1132	1139	1927	1927					0.041414810348555875
AISETKVKK	9	Unmodified	_AISETKVKK_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.3111267089844	2	502.310949	1002.60735	-0.072604	-3.647E-05	0.41311	0.00020751	0.3405	0.00017104	502.31108994318197	14.453	0.21162	14.453	14.366	14.578	0					6	5	2	0	0	0	0.021961	1	3529	3529		118.74	31.047	1	577950			1911	7027	1133	1140	1928	1928					0.10614602511429894
AISETKVKK	9	Unmodified	_AISETKVKK_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3108215332031	2	502.310949	1002.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.409	1	14.409	13.909	14.909	0								0	0	0	0.19847	1	3578	3578		51.193	7.0759	1				1912	7027	1133	1140	1929	1929					0.10614602511429894
AISEYIATK	9	Unmodified	_AISEYIATK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2737731933594	2	498.274032	994.533512	0.22394	0.00011159	-1.1152	-0.00055568	-0.89126	-0.00044409	498.27368831305716	29.949	0.25172	29.949	29.868	30.119	0					12	9	2	0	0	0	0.10915	1	9485	9485		77.318	26.125	1	134080			1913	1891	1134	1141	1930	1930					0.03602634349101663
AISEYIATK	9	Unmodified	_AISEYIATK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2738342285156	2	498.274032	994.533512	0.69161	0.00034461	-0.95287	-0.00047479	-0.26126	-0.00013018	498.27358580833544	30.209	0.44936	30.209	30.087	30.537	0					23	11	4	0	0	0	0.0097668	1	10860	10860		141.52	64.746	1	1218400			1914	1891	1134	1141	1931	1931					0.03602634349101663
AISEYIATK	9	Unmodified	_AISEYIATK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7758483886719	2	498.274032	994.533512	3.3845	0.0016864	-3.2924	-0.0016405	0.092039	4.5861E-05	498.2722998795693	29.993	0.18142	29.993	29.882	30.064	0					10	6	2	0	0	0	0.24334	1	9795	9795		56.434	25.93	1	83982			1915	1891	1134	1141	1932	1932					0.03602634349101663
AISEYIATK	9	Unmodified	_AISEYIATK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2742004394531	2	498.274032	994.533512	-0.022856	-1.1389E-05	-0.056998	-2.8401E-05	-0.079854	-3.9789E-05	498.2739470777182	30.196	0.32512	30.196	30.059	30.384	0					17	7	3	0	0	0	0.035106	1	11252	11252		104.01	56.356	1	1276700			1916	1891	1134	1141	1933	1933					0.03602634349101663
AISEYIATK	9	Unmodified	_AISEYIATK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2748107910156	2	498.274032	994.533512	-0.23209	-0.00011565	0.093522	4.66E-05	-0.13857	-6.9046E-05	498.2741223578995	29.995	0.14012	29.995	29.907	30.047	0					8	3	3	0	0	0	0.3269	1	10150	10150		47.96	13.787	1	183450			1917	1891	1134	1141	1934	1934					0.03602634349101663
AISEYIATK	9	Unmodified	_AISEYIATK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.27374267578125	2	498.274032	994.533512	0.17534	8.7367E-05	-0.56039	-0.00027923	-0.38505	-0.00019186	498.2733713149885	29.978	0.14805	29.978	29.929	30.077	0					5	3	2	0	0	0	0.38666	1	10164	10164		42.864	7.246	1	135010			1918	1891	1134	1141	1935	1935					0.03602634349101663
AISEYIATK	9	Unmodified	_AISEYIATK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2738952636719	2	498.274032	994.533512	-0.72963	-0.00036356	0.3998	0.00019921	-0.32984	-0.00016435	498.2742210798882	30.155	0.31151	30.155	30.048	30.359	0					19	6	4	0	0	0	0.10506	1	11119	11119		78.264	34.147	1	1833100			1919	1891	1134	1141	1936	1936					0.03602634349101663
AISKRPGARR	10	Unmodified	_AISKRPGARR_					0	0	0			REV__ENST00000606965.5_1_6:158535743-158540110:-|nuORF	REV__ENST00000606965.5_1_6:158535743-158540110:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.34619140625	2	556.343981	1110.67341	0.56653	0.00031518	2.7149	0.0015104	3.2815	0.0018256	556.3456541534684	14.691	0.12869	14.691	14.605	14.734	0					10	3	4	0	0	0	0.23612	1	3640	3640		75.043	6.1972	1	482450	+		1920	20621	1135	1142	1937	1937					0.12249856196854125
AISLIFSLK	9	Unmodified	_AISLIFSLK_					0	0	0		PAH|p.S70Lfs*7|1|0.06|ENSG00000171759|chr12:102894879-102894880|-/TAAGAAGAAAG|frameshift_variant;ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH	PAH|p.S70Lfs*7|1|0.06|ENSG00000171759|chr12:102894879-102894880|-/TAAGAAGAAAG|frameshift_variant	PAH|p.S70Lfs*7|1|0.06|ENSG00000171759|chr12:102894879-102894880|-/TAAGAAGAAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.8151550292969	2	496.312961	990.611368	0.72508	0.00035987	-0.80832	-0.00040118	-0.083241	-4.1314E-05	496.3125245544093	41.112	0.26948	41.112	41.009	41.278	0					21	12	2	0	0	0	0.13267	1	15618	15618		71.877	4.3838	1	225700			1921	6316	1136	1143	1938	1938					0.11568692005141656
AISPLVSEK	9	Unmodified	_AISPLVSEK_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000548656.2_1_14:19412496-19412640:-|nuORF;ENST00000547785.2_1_14:20146241-20147198:+|nuORF;ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.27630615234375	2	472.276575	942.538597	-0.022986	-1.0856E-05	-0.48103	-0.00022718	-0.50402	-0.00023804	472.27632118248954	25.982	0.56166	25.982	25.744	26.306	0					34	15	3	0	0	0	0.25716	1	7822	7822		54.776	3.4409	1	323540			1922	2220	1137	1144	1939	1939					0.06502938211713172
AISPQAQDKRP	11	Unmodified	_AISPQAQDKRP_					0	0	0		ENSG00000229924|ENST00000512047|FAM90A26	ENSG00000229924|ENST00000512047|FAM90A26	ENSG00000229924|ENST00000512047|FAM90A26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.8307495117188	2	605.830569	1209.64658	0.32853	0.00019903	-0.044518	-2.697E-05	0.28401	0.00017206	605.8305608419457	24.866	0.41794	24.866	24.656	25.074	0					28	10	4	0	0	0	0.48922	1	8421	8421		45.022	2.6841	1	948980			1923	7888	1138	1145	1940	1940					0.0501470279498335
AISSPTVSR	9	Unmodified	_AISSPTVSR_					0	0	0		ENSG00000171368|ENST00000360578|TPPP	ENSG00000171368|ENST00000360578|TPPP	ENSG00000171368|ENST00000360578|TPPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2555236816406	2	459.256174	916.497795	-2.6066	-0.0011971	-0.79903	-0.00036696	-3.4056	-0.001564	459.25689984485837	28.593	0.20857	28.593	28.467	28.675	0					10	5	3	0	0	0	0.30951	1	9503	9503		49.442	1.7842	1	135620			1924	6293	1139	1146	1941	1941					0.03620596892096728
AISSTVLGK	9	Unmodified	_AISSTVLGK_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.263916015625	2	438.263468	874.512382	0.25748	0.00011284	0.14584	6.3914E-05	0.40332	0.00017676	438.2635449388728	27.069	0.19308	27.069	26.943	27.136	0					10	6	2	0	0	0	0.098791	1	8290	8290		79.713	13.283	1	124840			1925	2411	1140	1147	1942	1942					0.07010669040232642
AISSTVLGK	9	Unmodified	_AISSTVLGK_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2633972167969	2	438.263468	874.512382	0.60105	0.00026342	-0.68655	-0.00030089	-0.0855	-3.7472E-05	438.26315514775735	27.341	0.26337	27.341	27.209	27.472	0					13	6	3	0	0	0	0.032052	1	9527	9527		107.01	40.578	1	782130			1926	2411	1140	1147	1943	1943					0.07010669040232642
AISSTVLGK	9	Unmodified	_AISSTVLGK_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.263427734375	2	438.263468	874.512382	-0.96817	-0.00042431	1.2729	0.00055787	0.30474	0.00013356	438.26400027510107	27.077	0.2154	27.077	26.99	27.205	0					13	7	3	0	0	0	0.41113	1	8572	8572		40.778	1.5253	1	270110			1927	2411	1140	1147	1944	1944					0.07010669040232642
AISSTVLGK	9	Unmodified	_AISSTVLGK_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2635498046875	2	438.263468	874.512382	-0.61246	-0.00026842	1.0483	0.00045941	0.4358	0.000191	438.2639746496195	27.132	0.20464	27.132	27.014	27.219	0					9	5	2	0	0	0	0.055856	1	8832	8832		93.195	45.28	1	129960			1928	2411	1140	1147	1945	1945					0.07010669040232642
AISSTVLGK	9	Unmodified	_AISSTVLGK_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2630615234375	2	438.263468	874.512382	-0.5748	-0.00025191	-0.096277	-4.2195E-05	-0.67107	-0.00029411	438.26335691141634	27.264	0.27044	27.264	27.154	27.424	0					12	5	3	0	0	0	0.032052	1	9747	9747		107.01	27.556	1	708660			1929	2411	1140	1147	1946	1946					0.07010669040232642
AISSTVLGK	9	Unmodified	_AISSTVLGK_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.26324462890625	2	438.263468	874.512382	0.68371	0.00029965	-0.91277	-0.00040004	-0.22906	-0.00010039	438.26300588399204	27.265	0.32283	27.265	27.187	27.51	0					12	6	3	0	0	0	0.078509	1	9743	9743		85.161	23.053	1	806690			1930	2411	1140	1147	1947	1947					0.07010669040232642
AISVMWKN	8	Unmodified	_AISVMWKN_					0	0	0		ENST00000342992.10_3_2:179465685-179466102:-|nuORF	ENST00000342992.10_3_2:179465685-179466102:-|nuORF	ENST00000342992.10_3_2:179465685-179466102:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7529602050781	2	474.752213	947.489873	2.34	0.0011109	-0.65381	-0.0003104	1.6862	0.00080052	474.751876354452	23.109	0.21111	23.109	23.007	23.218	0					11	4	3	0	0	0	0.41952	1	7800	7800		68.485	68.485	1	1852600			1931	8743	1141	1148	1948	1948					0.014027463709680887
AITRGRTACGL	11	Unmodified	_AITRGRTACGL_					0	0	0			REV__ENSG00000151005|ENST00000280605|TKTL2	REV__ENSG00000151005|ENST00000280605|TKTL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.5432434082031	3	373.54148	1117.60261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.444	1	55.444	54.944	55.944	0								0	0	0	0.45674	1	20989	20989		20.03	0	1		+		1932	15461	1142	1149	1949	1949					0.04851395097011846
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.289794921875	2	499.289485	996.564418	-0.051141	-2.5534E-05	-0.24769	-0.00012367	-0.29883	-0.0001492	499.2893367595122	36.778	0.29845	36.778	36.699	36.997	0					36	15	3	0	0	0	0.23186	1	12039	12039		57.811	25.856	1	592790			1933	6837	1143	1150	1950	1950					0.06599832453991894
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2894592285156	2	499.289485	996.564418	-0.21139	-0.00010555	0.26429	0.00013196	0.052896	2.6411E-05	499.28961568556883	37.067	0.49369	37.067	36.93	37.423	0					26	14	2	0	0	0	0.11118	1	13999	13999		76.847	34.45	1	4343000			1934	6837	1143	1150	1951	1951					0.06599832453991894
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.28887939453125	2	499.289485	996.564418	-1.0555	-0.00052699	1.209	0.00060365	0.15353	7.6655E-05	499.29008061535234	36.838	0.39219	36.838	36.745	37.137	0					53	21	4	0	0	0	0.14734	1	12454	12454		68.485	20.569	1	731950			1935	6837	1143	1150	1952	1952					0.06599832453991894
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2890319824219	2	499.289485	996.564418	0.86155	0.00043016	-1.0127	-0.00050565	-0.15119	-7.5486E-05	499.2889632198902	37.031	0.64097	37.031	36.894	37.535	0					45	19	3	0	0	0	0.028654	1	14436	14436		110.34	33.491	1	5863800			1936	6837	1143	1150	1953	1953					0.06599832453991894
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2893371582031	2	499.289485	996.564418	-0.65717	-0.00032812	0.6845	0.00034176	0.027333	1.3647E-05	499.2897010539832	37.024	0.20508	37.024	36.95	37.155	0					12	6	3	0	0	0	0.097811	1	14461	14461		79.939	39.367	1	199250			1937	6837	1143	1150	1954	1954					0.06599832453991894
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.28961181640625	2	499.289485	996.564418	0.16572	8.274E-05	0.42683	0.00021311	0.59254	0.00029585	499.28974438238725	36.828	0.30834	36.828	36.751	37.059	0					27	13	3	0	0	0	0.097811	1	13172	13172		79.939	29.915	1	557830			1938	6837	1143	1150	1955	1955					0.06599832453991894
AIVEVEEALI	10	Unmodified	_AIVEVEEALI_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.307373046875	2	543.308072	1084.60159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.108	1	20.108	19.608	20.608	0								0	0	0	0.3805	1	5561	5561		11.511	0	1				1939	2396	1144	1151	1956	1956					0.06267459209107074
AIVGGNRKAL	10	Unmodified	_AIVGGNRKAL_					0	0	0			REV__ENSG00000167011|ENST00000300303|NAT16	REV__ENSG00000167011|ENST00000300303|NAT16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.8091125488281	2	499.808908	997.603263	-1.0373	-0.00051847	0.99122	0.00049542	-0.046104	-2.3043E-05	499.80934331225086	25.376	0.19456	25.376	25.312	25.507	0					10	7	2	0	0	0	0.44601	1	7893	7893		38.806	4.6336	1	146810	+		1940	16160	1145	1152	1957	1957					0.10436557808372982
AIVGRPNVGK	10	Unmodified	_AIVGRPNVGK_					0	0	0		tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.31317138671875	2	505.808908	1009.60326	-0.044007	-2.2259E-05	-0.56289	-0.00028472	-0.6069	-0.00030698	506.31144158066496	38.871	0.19712	38.871	38.751	38.948	0					13	7	2	0	0	0	0.51121	1	14773	14773		44.117	1.6423	1	59874			1941	22940	1146	1153	1958	1958					0.098845578083683
AIVKLFLKK	9	Unmodified	_AIVKLFLKK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000100280|Q10567-4|AP1B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3681030273438	2	530.36807	1058.72159	0.11647	6.1771E-05	0.39674	0.00021042	0.51321	0.00027219	530.3682495071837	29.874	0.60439	29.874	29.762	30.366	0					28	15	3	0	0	0	0.10915	1	10713	10713		71.296	47.093	1	176920			1942	1994;176	1147	1154	1959	1959					0.19457537064181452
AIVKLFLKK	9	Unmodified	_AIVKLFLKK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000100280|Q10567-4|AP1B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.9143981933594	3	353.914472	1058.72159	0.49148	0.00017394	-0.27474	-9.7236E-05	0.21673	7.6705E-05	353.9143129089348	29.898	0.7638	29.898	29.762	30.526	0					44	19	3	0	0	0	0.13267	1	10726	10726		71.877	31.099	1	463430			1943	1994;176	1147	1154	1960	1960					0.19457537064181452
AIVKLFLKK	9	Unmodified	_AIVKLFLKK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000100280|Q10567-4|AP1B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.367919921875	2	530.36807	1058.72159	0.28695	0.00015219	0.18446	9.7831E-05	0.4714	0.00025002	530.3682239318068	29.892	0.30806	29.892	29.734	30.042	0					8	6	2	0	0	0	0.21263	1	11107	11107		63.306	32.803	1	108370			1944	1994;176	1147	1154	1961	1961					0.19457537064181452
AIVLNKEH	8	Unmodified	_AIVLNKEH_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2688903808594	2	462.269084	922.523616	-1.1458	-0.00052968	1.1018	0.00050933	-0.044007	-2.0343E-05	462.2698437804491	34.079	0.097988	34.079	34.02	34.118	0					5	3	2	0	0	0	0.52345	1	11486	11486		57.811	1.0902	1	45836	+		1945	13572	1148	1155	1962	1962					0.0592549113438281
AIWHVTFSN	9	Unmodified	_AIWHVTFSN_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.851318359375	3	358.85042	1073.52943	0.48441	0.00017383	2.9865	0.0010717	3.4709	0.0012455	358.85183059154144	29.695	0.36713	29.695	29.644	30.011	0					18	9	4	0	0	0	0.58342	1	10658	10658		23.523	1.8369	1	295290	+		1946	14109	1149	1156	1963	1963					-0.004394103539425487
AIWVCLRY	8	Unmodified	_AIWVCLRY_					0	0	0			REV__ENST00000235310.7_1_1:11734653-11734812:-|nuORF	REV__ENST00000235310.7_1_1:11734653-11734812:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7772827148438	2	512.275855	1022.53716	0.0045554	2.3336E-06	1.8389	0.00094202	1.8434	0.00094435	512.2766241841472	42.97	0.16022	42.97	42.93	43.09	0					12	8	2	0	0	0	0.68754	1	16243	16243		35.201	0	1	136670	+		1947	17920	1150	1157	1964	1964					0.02679025641964472
AIYEPKTFK	9	Unmodified	_AIYEPKTFK_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.2060546875	3	366.206092	1095.59645	0.47387	0.00017353	-0.38376	-0.00014054	0.090107	3.2998E-05	366.20588832844584	26.801	0.72852	26.801	26.44	27.169	0					37	17	3	0	0	0	0.50461	1	9234	9234		39.253	20.991	1	2253300			1948	7947	1151	1158	1965	1965					0.052472001371370425
AIYEPKTFK	9	Unmodified	_AIYEPKTFK_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.8055419921875	2	548.8055	1095.59645	0.26976	0.00014804	-1.7244	-0.00094636	-1.4546	-0.00079832	548.8043888279507	26.551	0.66223	26.551	26.249	26.911	0					34	13	3	0	0	0	0.21263	1	9624	9624		60.118	19.34	1	403690			1949	7947	1151	1158	1966	1966					0.052472001371370425
AIYGTRKFK	9	Unmodified	_AIYGTRKFK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.3201904296875	2	542.319109	1082.62366	1.1202	0.0006075	0.23298	0.00012635	1.3532	0.00073385	542.3193684330575	19.937	0.11893	19.937	19.851	19.97	0					5	3	2	0	0	0	0.22823	1	5258	5258		60.118	20.865	1	87659			1950	7483	1152	1159	1967	1967					0.08565728468170164
AIYGTRKFK	9	Unmodified	_AIYGTRKFK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.3197021484375	2	542.319109	1082.62366	0.30751	0.00016677	0.8167	0.00044291	1.1242	0.00060968	542.3196609601761	20.283	0.34218	20.283	20.18	20.522	0					13	7	2	0	0	0	0.037712	1	6277	6277		95.815	41.039	1	712040			1951	7483	1152	1159	1968	1968					0.08565728468170164
AIYGTRKFK	9	Unmodified	_AIYGTRKFK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.3194580078125	2	542.319109	1082.62366	0.21121	0.00011454	-0.13634	-7.3939E-05	0.074874	4.0606E-05	542.3190537603373	20.007	0.093788	20.007	19.943	20.037	0					6	3	2	0	0	0	0.24169	1	5516	5516		58.23	26.275	1	78446			1952	7483	1152	1159	1969	1969					0.08565728468170164
AIYGTRKFK	9	Unmodified	_AIYGTRKFK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.3191528320312	2	542.319109	1082.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.068	1	20.068	19.568	20.568	0								0	0	0	0.22075	1	5573	5573		40.778	5.1599	1				1953	7483	1152	1159	1970	1970					0.08565728468170164
AIYGTRKFK	9	Unmodified	_AIYGTRKFK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.3192749023438	2	542.319109	1082.62366	3.5828	0.001943	-3.7037	-0.0020086	-0.12088	-6.5553E-05	542.317464981631	20.174	0.31535	20.174	20.111	20.427	0					19	6	4	0	0	0	0.017421	1	6375	6375		98.629	45.278	1	728420			1954	7483	1152	1159	1971	1971					0.08565728468170164
AIYKTPPGIQK	11	Unmodified	_AIYKTPPGIQK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.9081115722656	3	405.908046	1214.70231	0.61955	0.00025148	-0.3205	-0.00013009	0.29905	0.00012139	405.90795268864866	24.925	0.20445	24.925	24.828	25.032	0					8	6	2	0	0	0	0.32196	1	7423	7423		60.167	23.849	1	95009			1955	292	1153	1160	1972	1972					0.10354535982583002
AIYKTPPGIQK	11	Unmodified	_AIYKTPPGIQK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.9079284667969	3	405.908046	1214.70231	0.97284	0.00039488	-0.97267	-0.00039481	0.00016748	6.798E-08	405.9075755189644	25.155	0.72275	25.155	24.786	25.509	0					33	17	3	0	0	0	0.12207	1	8569	8569		84.31	40.66	1	845950			1956	292	1153	1160	1973	1973					0.10354535982583002
AIYKTPPGIQK	11	Unmodified	_AIYKTPPGIQK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.90789794921875	3	405.908046	1214.70231	-0.56819	-0.00023063	0.42918	0.00017421	-0.13902	-5.6427E-05	405.908175108085	25.068	0.46017	25.068	24.821	25.281	0					24	9	4	0	0	0	0.29048	1	8740	8740		63.694	21.356	1	1345100			1957	292	1153	1160	1974	1974					0.10354535982583002
AIYKTPPGIQK	11	Unmodified	_AIYKTPPGIQK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.907958984375	3	405.908046	1214.70231	0.66638	0.00027049	-0.75517	-0.00030653	-0.08879	-3.6041E-05	405.9077593773535	25.102	0.46173	25.102	24.854	25.315	0					15	9	2	0	0	0	0.63225	1	8759	8759		34.087	4.5358	1	750490			1958	292	1153	1160	1975	1975					0.10354535982583002
AIYQKDEAL	9	Unmodified	_AIYQKDEAL_					0	0	0		MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant;MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.T1385I|1|0.36|ENSG00000166963|chr15:43525627-43525627|C/T|missense_variant	MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant	MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.85382080078125	3	350.853718	1049.53933	-0.82773	-0.00029041	0.60304	0.00021158	-0.22468	-7.883E-05	350.8538844733134	21.936	0.17026	21.936	21.814	21.984	0					9	5	2	0	0	0	0.48389	1	6397	6397		34.173	1.3601	1	68873			1959	5956	1154	1161	1976	1976					0.016537328607682866
AKAAFDKK	8	Unmodified	_AKAAFDKK_					0	0	0			REV__nc|ENSG00000162437|Q9HCJ3-2|RAVER2	REV__nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.7568054199219	2	439.758352	877.502152	0.56634	0.00024905	-3.0573	-0.0013445	-2.4909	-0.0010954	439.7568329262897	12.662	0.093671	12.662	12.603	12.697	0					6	3	2	0	0	0	0.5676	1	2709	2709		53.351	1.0523	1	167540	+		1960	15813	1155	1162	1977	1977					0.05850106105663144
AKAGRGRSI	9	Unmodified	_AKAGRGRSI_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.27880859375	2	458.277775	914.540997	2.5049	0.0011479	-0.30097	-0.00013793	2.2039	0.00101	458.27764845732014	31.444	0.462	31.444	31.043	31.505	0					18	9	4	0	0	0	0.30951	1	11767	11767		49.442	49.442	1	1951500	+		1961	14727	1156	1163	1978	1978					0.08030831460052923
AKAIGYAT	8	Unmodified	_AKAIGYAT_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	397.7237548828125	2	397.723978	793.433404	-1.2964	-0.0005156	1.1953	0.00047541	-0.10105	-4.0188E-05	397.72438897606463	21.362	0.14598	21.362	21.282	21.428	0					8	4	2	0	0	0	0.49216	1	6112	6112		60.972	7.6205	1	260270			1962	11803	1157	1164	1979	1979					0.028424418059557865
AKAIGYAT	8	Unmodified	_AKAIGYAT_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	397.72393798828125	2	397.723978	793.433404	-0.14603	-5.8079E-05	-0.18743	-7.4547E-05	-0.33346	-0.00013263	397.72395239219816	21.44	0.15601	21.44	21.343	21.499	0					6	3	2	0	0	0	0.41701	1	6211	6211		68.787	29.981	1	109430			1963	11803	1157	1164	1980	1980					0.028424418059557865
AKAIGYAT	8	Unmodified	_AKAIGYAT_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	397.723876953125	2	397.723978	793.433404	-2.2369	-0.00088965	1.8743	0.00074545	-0.36257	-0.0001442	397.72474095479004	21.431	0.24356	21.431	21.329	21.572	0					11	5	3	0	0	0	0.32815	1	6203	6203		79.451	26.1	1	268640			1964	11803	1157	1164	1981	1981					0.028424418059557865
AKAKGSGG	8	Unmodified	_AKAKGSGG_					0	0	0		nc|ENSG00000166405|Q7Z5B4-2|RIC3;ENST00000529035.1_1_11:8157336-8161717:-|nuORF;nc|ENSG00000166405|Q7Z5B4-6|RIC3;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3	nc|ENSG00000166405|Q7Z5B4-2|RIC3	nc|ENSG00000166405|Q7Z5B4-2|RIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.1935119628906	2	338.192845	674.371138	1.4834	0.00050166	0.51932	0.00017563	2.0027	0.00067729	338.192931922149	43.682	0.34053	43.682	43.593	43.933	0					29	17	2	0	0	0	0.7887	1	17062	17062		12.959	4.1369	1	138790			1965	5896	1158	1165	1982	1982					0.02092715457615668
AKALMHFGEHD	11	Unmodified	_AKALMHFGEHD_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	628.2991333007812	2	628.298047	1254.58154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.772	1	12.772	12.272	13.272	0								0	0	0	0.45674	1	2554	2554		14.865	9.3071	1				1966	11572	1159	1166	1983	1983					-0.035566150025033494
AKAPLSTVSA	10	Unmodified	_AKAPLSTVSA_					0	0	0		ENST00000474283.1_1_1:25890132-25893480:+|nuORF;ENST00000484476.5_1_1:25889538-25893480:+|nuORF;ENST00000488127.1_1_1:25880414-25890333:+|nuORF;ENSG00000157978|ENST00000374338|LDLRAP1	ENST00000474283.1_1_1:25890132-25893480:+|nuORF	ENST00000474283.1_1_1:25890132-25893480:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.77374267578125	2	472.7742	943.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.511	1	27.511	27.011	28.011	0								0	0	0	0.38797	1	9976	9976		34.173	3.6689	1				1967	5239	1160	1167	1984	1984					0.059820540689429436
AKARTVPAPT	10	Unmodified	_AKARTVPAPT_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	337.8697509765625	3	337.869703	1010.58728	0.51445	0.00017382	-0.53169	-0.00017964	-0.017236	-5.8234E-06	337.8695688990359	14.976	0.22611	14.976	14.891	15.117	0					16	5	4	0	0	0	0.54861	1	3775	3775		40.058	0.80534	1	1976000	+		1968	16193	1161	1168	1985	1985					0.08240851571463281
AKDKLQKPK	9	Unmodified	_AKDKLQKPK_					0	0	0			REV__nc|ENSG00000100345|P35579-2|MYH9	REV__nc|ENSG00000100345|P35579-2|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.5571594238281	3	352.557236	1054.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.149	1	18.149	17.649	18.649	0								0	0	0	0.18645	1	4679	4679		52.937	1.6012	1		+		1969	13544	1162	1169	1986	1986					0.12473997639654044
AKDLAKKEA	9	Unmodified	_AKDLAKKEA_					0	0	0		ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B;ENST00000555916.1_1_14:74389420-74404769:-|nuORF	ENSG00000156050|ENST00000286544|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.28466796875	2	487.287474	972.560395	-2.9122	-0.0014191	0.39233	0.00019118	-2.5199	-0.0012279	487.28903280983343	35.548	0.27988	35.548	35.432	35.712	0					23	11	3	0	0	0	0.41113	1	12696	12696		40.778	7.2626	1	150910			1970	5153	1163	1170	1987	1987					0.0730174296027144
AKDTFFCQ	8	Unmodified	_AKDTFFCQ_					0	0	0			REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.21759033203125	2	480.218203	958.421853	-0.49669	-0.00023852	-1.3521	-0.00064931	-1.8488	-0.00088783	480.2175922521075	12.301	0.13476	12.301	12.208	12.343	0					5	3	2	0	0	0	0.64144	1	2726	2726		42.396	3.59	1	486420	+		1971	15563	1164	1171	1988	1988					-0.05902123279690841
AKELATIKK	9	Unmodified	_AKELATIKK_					0	0	0			REV__TEKT1|p.N295K|1|0.18|ENSG00000167858|chr17:6800911-6800911|A/T|missense_variant	REV__TEKT1|p.N295K|1|0.18|ENSG00000167858|chr17:6800911-6800911|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.5498962402344	3	334.54997	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.291	1	16.291	15.791	16.791	0								0	0	0	0.18645	1	4626	4626		43.651	7.3331	1		+		1972	21630	1165	1172	1989	1989					0.1277919289109377
AKEQSSYAF	9	Unmodified	_AKEQSSYAF_					0	0	0			REV__ENST00000610073.1_1_13:114523839-114538639:-|nuORF	REV__ENST00000610073.1_1_13:114523839-114538639:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7510375976562	2	515.745639	1029.47673	1.2116	0.0006249	3.9502	0.0020373	5.1619	0.0026622	515.7476426397282	18.262	0.64531	18.262	18.171	18.816	0					30	15	2	0	0	0	0.1115	1	5318	5318		76.774	2.7994	1	1006300	+		1973	16912	1166	1173	1990	1990					-0.036834132074318404
AKESLVDIIK	10	Unmodified	_AKESLVDIIK_					0	0	0			REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1	REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.5608215332031	3	372.560535	1114.65977	-0.11926	-4.4431E-05	1.2079	0.00045	1.0886	0.00040557	372.56107495833743	18.242	0.24467	18.242	18.101	18.346	0					12	6	3	0	0	0	0.65051	1	4729	4729		28.081	2.0181	1	106490	+		1974	21681	1167	1174	1991	1991					0.10703140854366211
AKESSKSQKI	10	Unmodified	_AKESSKSQKI_					0	0	0		nc|ENSG00000092853|Q9HAW4-3|CLSPN	nc|ENSG00000092853|Q9HAW4-3|CLSPN	nc|ENSG00000092853|Q9HAW4-3|CLSPN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.2117004394531	3	369.211906	1104.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.344	1	41.344	40.844	41.844	0								0	0	0	0.4201	1	15716	15716		22.58	0.61977	1				1975	11454	1168	1175	1992	1992					0.06576495672152305
AKFAATYF	8	Unmodified	_AKFAATYF_					0	0	0		ENST00000481328.7_1_11:76890894-76905079:+|nuORF;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A	ENST00000481328.7_1_11:76890894-76905079:+|nuORF	ENST00000481328.7_1_11:76890894-76905079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.73907470703125	2	459.739628	917.464704	0.0012752	5.8626E-07	-1.2093	-0.00055596	-1.208	-0.00055537	459.7392825120142	23.301	0.10454	23.301	23.251	23.356	0					4	2	2	0	0	0	0.49887	1	7101	7101		60.294	8.9585	1	55431			1976	4168	1169	1176	1993	1993					0.0026701484002842335
AKFLAKKEF	9	Unmodified	_AKFLAKKEF_					0	0	0		tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.22064208984375	3	361.218332	1080.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.559	1	17.559	17.059	18.059	0								0	0	0	0.37233	1	4423	4423		19.104	0	1				1977	22745	1170	1177	1994	1994					0.09607496753687883
AKFNAIVGSI	10	Unmodified	_AKFNAIVGSI_					0	0	0		tr|U7STM3|U7STM3_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01113PE=4SV=1	tr|U7STM3|U7STM3_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01113PE=4SV=1	tr|U7STM3|U7STM3_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01113PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2977294921875	2	510.297842	1018.58113	-0.11501	-5.8687E-05	-0.23017	-0.00011745	-0.34517	-0.00017614	510.29769140981966	26.655	0.2445	26.655	26.442	26.687	0					13	8	2	0	0	0	0.62235	1	8058	8058		31.53	2.3598	1	67703			1978	22788	1171	1178	1995	1995					0.07258333339962064
AKGAEVLAEA	10	Unmodified	_AKGAEVLAEA_					0	0	0			REV__ENSG00000144843|ENST00000357003|ADPRH	REV__ENSG00000144843|ENST00000357003|ADPRH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7635803222656	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.54	1	26.54	26.04	27.04	0								0	0	0	0.27541	1	8359	8359		54.776	1.6874	1		+		1979	15248	1172	1179	1996	1996					0.03265463689274384
AKGPSPLRHPI	11	Unmodified	_AKGPSPLRHPI_					0	0	0			REV__ENST00000533387.5_1_11:134130766-134134851:+|nuORF	REV__ENST00000533387.5_1_11:134130766-134134851:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.5679016113281	3	391.568135	1171.68258	0.47086	0.00018437	-0.66855	-0.00026178	-0.19769	-7.7409E-05	391.5677824236994	31.019	0.40596	31.019	30.913	31.319	0					13	8	2	0	0	0	0.74306	1	11565	11565		15.921	1.227	1	607250	+		1980	20081	1173	1180	1997	1997					0.10360204762514513
AKGQVDGIAG	10	Unmodified	_AKGQVDGIAG_					0	0	0			REV__ENST00000372806.7_1_20:43704391-43704694:+|nuORF	REV__ENST00000372806.7_1_20:43704391-43704694:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.24822998046875	2	458.248349	914.482145	-0.40861	-0.00018725	0.29801	0.00013656	-0.1106	-5.0681E-05	458.2484157402585	17.765	0.33927	17.765	17.579	17.918	0					14	9	2	0	0	0	0.60281	1	4307	4307		33.922	3.6039	1	120320	+		1981	18673	1174	1181	1998	1998					0.021483103750597365
AKGRTVYLE	9	Unmodified	_AKGRTVYLE_					0	0	0		GPX8|p.S61Y|2|0.28|ENSG00000164294|chr5:55160374-55160374|C/A|missense_variant	GPX8|p.S61Y|2|0.28|ENSG00000164294|chr5:55160374-55160374|C/A|missense_variant	GPX8|p.S61Y|2|0.28|ENSG00000164294|chr5:55160374-55160374|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.793212890625	2	518.792924	1035.57129	3.3469	0.0017364	-3.1323	-0.001625	0.21462	0.00011134	518.7910856855017	15.339	0.21608	15.339	15.229	15.445	0					6	4	2	0	0	0	0.33044	1	4035	4035		47.657	3.2801	1	439280			1982	11164	1175	1182	1999	1999					0.05493145334594374
AKGVTAGITN	10	Unmodified	_AKGVTAGITN_					0	0	0		ENST00000332499.3_1_17:43226364-43226442:+|nuORF	ENST00000332499.3_1_17:43226364-43226442:+|nuORF	ENST00000332499.3_1_17:43226364-43226442:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2648620605469	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.158	1	27.158	26.658	27.658	0								0	0	0	0.29594	1	8849	8849		51.528	1.9917	1				1983	8678	1176	1183	2000	2000					0.04540883409151775
AKGYPEPSL	9	Unmodified	_AKGYPEPSL_					0	0	0		ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.25482177734375	2	481.2531	960.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.2	1	43.2	42.7	43.7	0								0	0	0	0.21054	1	16918	16918		49.442	1.7842	1				1984	9107	1177	1184	2001	2001					0.00982078660570096
AKHILELSP	9	Unmodified	_AKHILELSP_					0	0	0			REV__ADGRF5|p.Q821Afs*22|1|0.06|ENSG00000069122|chr6:46859442-46859443|-/GGGC|frameshift_variant	REV__ADGRF5|p.Q821Afs*22|1|0.06|ENSG00000069122|chr6:46859442-46859443|-/GGGC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5347595214844	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.802	1	55.802	55.302	56.302	0								0	0	0	0.37821	1	20024	20024		24.519	0.99649	1		+		1985	12088	1178	1185	2002	2002					0.0781033333993264
AKIDLTITY	9	Unmodified	_AKIDLTITY_					0	0	0			REV__ENSG00000188771|ENST00000338832|PLET1	REV__ENSG00000188771|ENST00000338832|PLET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2984619140625	2	519.297507	1036.58046	0.98089	0.00050937	0.77145	0.00040061	1.7523	0.00090998	519.2977821670404	40.737	0.21059	40.737	40.627	40.838	0					27	11	3	0	0	0	0.071197	1	14429	14429		87.754	5.5138	1	261040	+		1986	17191	1179	1186	2003	2003					0.06363493900221329
AKKDFFRL	8	Unmodified	_AKKDFFRL_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2817993164062	2	512.800552	1023.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.479	1	14.479	13.979	14.979	0								0	0	0	1.7419	1	3612	3612		25.45	1.2474	1				1987	7600	1180	1187	2004	2004					0.0757005692240682
AKKLPSEK	8	Unmodified	_AKKLPSEK_					0	0	0			REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7791442871094	2	450.779285	899.544017	-0.30822	-0.00013894	0.62569	0.00028205	0.31747	0.00014311	450.7795530975724	16.619	0.1671	16.619	16.498	16.665	0					8	5	2	0	0	0	0.7126	1	3819	3819		31.955	2.8053	1	56885	+		1988	21673	1181	1188	2005	2005					0.09022661794188025
AKKSTGPTQE	10	Unmodified	_AKKSTGPTQE_					0	0	0		nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185	nc|ENSG00000147394|O15231-4|ZNF185	nc|ENSG00000147394|O15231-4|ZNF185	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.77783203125	2	523.77747	1045.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.051	1	18.051	17.551	18.551	0								0	0	0	0.31444	1	4633	4633		48.602	2.6293	1				1989	11575	1182	1189	2006	2006					0.019439472296880922
AKKYQLTNAF	10	Unmodified	_AKKYQLTNAF_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.2209167480469	3	395.220513	1182.63971	0.20347	8.0416E-05	0.56155	0.00022193	0.76502	0.00030235	395.2207254336831	26.311	0.19685	26.311	26.216	26.413	0					7	4	2	0	0	0	0.66699	1	8464	8464		26.063	2.5407	1	101220			1990	2200	1183	1190	2007	2007					0.055693899143989256
AKLAGPTRE	9	Unmodified	_AKLAGPTRE_					0	0	0			REV__ENST00000526559.5_1_11:64693057-64693198:+|nuORF	REV__ENST00000526559.5_1_11:64693057-64693198:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.77166748046875	2	471.771991	941.529429	-1.4053	-0.00066297	0.3709	0.00017498	-1.0344	-0.00048799	471.77227400194135	21.128	0.13531	21.128	21.032	21.168	0					9	4	3	0	0	0	0.17854	1	6007	6007		64.207	8.7031	1	179820	+		1991	19997	1184	1191	2008	2008					0.056325896460293734
AKLEKILSK	9	Unmodified	_AKLEKILSK_					0	0	0		ENSG00000182504|ENST00000341893|CEP97;nc|ENSG00000182504|Q8IW35-2|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF;CEP97|p.K618Nfs*15|1|0.41|ENSG00000182504|chr3:101762516-101762516|A/-|frameshift_variant	ENSG00000182504|ENST00000341893|CEP97	ENSG00000182504|ENST00000341893|CEP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3364868164062	2	515.336967	1028.65938	0.0553	2.8498E-05	-0.39517	-0.00020365	-0.33987	-0.00017515	515.3366200279066	19.939	0.083609	19.939	19.892	19.976	0					4	2	2	0	0	0	0.57679	1	5493	5493		30.318	1.1477	1	82374			1992	6899	1185	1192	2009	2009					0.14619765925181127
AKLFTTWKK	9	Unmodified	_AKLFTTWKK_					0	0	0			REV__ENST00000466698.1_1_1:156130343-156131310:+|nuORF	REV__ENST00000466698.1_1_1:156130343-156131310:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.8948669433594	3	374.893848	1121.65972	3.2394	0.0012144	-0.77414	-0.00029022	2.4653	0.00092422	374.89364145191735	18.597	0.36502	18.597	18.387	18.752	0					18	7	4	0	0	0	0.16806	1	5607	5607		65.465	65.465	1	1299100	+		1993	17231	1186	1193	2010	2010					0.10375185645034435
AKLLLNWWD	9	Unmodified	_AKLLLNWWD_					0	0	0			REV__ENSG00000119041|ENST00000263956|GTF3C3	REV__ENSG00000119041|ENST00000263956|GTF3C3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.8804931640625	3	386.88172	1157.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.205	1	28.205	27.705	28.705	0								0	0	0	0.28666	1	9942	9942		37.812	2.6333	1		+		1994	14232	1187	1194	2011	2011					0.050823087483195195
AKLLQSTKSN	10	Unmodified	_AKLLQSTKSN_					0	0	0		ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3167724609375	2	545.316763	1088.61897	0.38659	0.00021081	0.073404	4.0028E-05	0.45999	0.00025084	545.3169274926779	51.2	0.51483	51.2	51.083	51.598	0					49	32	3	0	0	0	0.64162	1	18309	18309		29.17	1.0886	1	122250			1995	7989	1188	1195	2012	2012					0.07820799534761136
AKLQQCGIRT	10	Unmodified	_AKLQQCGIRT_					0	0	0			REV__ENSG00000143851|ENST00000691036|PTPN7	REV__ENSG00000143851|ENST00000691036|PTPN7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099304199219	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.128	1	39.128	38.628	39.628	0								0	0	0	0.3998	1	15439	15439		30.569	2.4874	1		+		1996	15212	1189	1196	2013	2013					0.05372279239782074
AKLRAIKQQ	9	Unmodified	_AKLRAIKQQ_					0	0	0		ENSG00000248712|ENST00000503566|CCDC153;nc|ENSG00000248712|Q494R4-2|DRC12;ENST00000375140.7_1_11:119061011-119064134:-|nuORF	ENSG00000248712|ENST00000503566|CCDC153	ENSG00000248712|ENST00000503566|CCDC153	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.3370971679688	2	528.337833	1054.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.602	1	21.602	21.102	22.102	0								0	0	0	0.37821	1	6292	6292		17.365	1.7232	1				1997	7978	1190	1197	2014	2014					0.13596819733788834
AKLRLKYST	9	Unmodified	_AKLRLKYST_					0	0	0			REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF	REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.5569763183594	3	360.557236	1078.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.792	1	20.792	20.292	21.292	0								0	0	0	0.31838	1	5627	5627		31.53	1.2121	1		+		1998	15318	1191	1198	2015	2015					0.11369997639667417
AKLSNHKK	8	Unmodified	_AKLSNHKK_					0	0	0		tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2824401855469	2	463.282526	924.550499	-0.74725	-0.00034619	1.8263	0.00084611	1.0791	0.00049992	463.28276496389753	11.382	0.13653	11.382	11.27	11.407	0					9	8	2	0	0	0	0.74405	1	2190	2190		27.882	2.3082	1	31386			1999	22625	1192	1199	2016	2016					0.0852059974556596
AKLTAGKVE	9	Unmodified	_AKLTAGKVE_					0	0	0			REV__ENST00000338910.8_1_13:20277187-20277373:-|nuORF	REV__ENST00000338910.8_1_13:20277187-20277373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7761535644531	2	458.776742	915.538931	-0.046937	-2.1534E-05	-0.82375	-0.00037792	-0.87069	-0.00039945	458.7764030008266	24.929	0.11012	24.929	24.827	24.937	0					4	2	2	0	0	0	0.22837	1	7840	7840		58.23	2.7257	1	102920	+		2000	18438	1193	1200	2017	2017					0.07778357931579194
AKMTIVKI	8	Unmodified	_AKMTIVKI_					0	0	0			REV__tr|U7SSQ7|U7SSQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01346PE=4SV=1	REV__tr|U7SSQ7|U7SSQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01346PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2886047363281	2	452.288431	902.562309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.497	1	14.497	13.997	14.997	0								0	0	0	1.7419	1	3772	3772		15.642	1.8665	1		+		2001	21879	1194	1201	2018	2018					0.10713080444543266
AKNFIGKAIR	10	Unmodified	_AKNFIGKAIR_					0	0	0		ENST00000463670.5_1_1:156252735-156254976:+|nuORF	ENST00000463670.5_1_1:156252735-156254976:+|nuORF	ENST00000463670.5_1_1:156252735-156254976:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.23272705078125	3	373.232864	1116.67676	-1.0518	-0.00039255	1.4501	0.00054124	0.39837	0.00014868	373.2334786034041	21.516	0.22498	21.516	21.453	21.678	0					12	7	2	0	0	0	0.65213	1	6183	6183		32.751	4.8683	1	194700			2002	9761	1195	1202	2019	2019					0.12309106250813784
AKNGATIK	8	Unmodified	_AKNGATIK_					0	0	0			REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.742431640625	2	401.742702	801.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.762	1	15.762	15.262	16.262	0								0	0	0	1.7419	1	3655	3655		31.955	1.4512	1		+		2003	21711	1196	1203	2020	2020					0.062175330715604105
AKNGPFLTN	9	Unmodified	_AKNGPFLTN_					0	0	0			REV__ENST00000515730.1_1_8:87493985-87494276:-|nuORF	REV__ENST00000515730.1_1_8:87493985-87494276:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.75054931640625	2	481.258717	960.50288	-0.10732	-5.1651E-05	0.83079	0.00039982	0.72346	0.00034817	481.2590397495284	22.719	0.16315	22.719	22.614	22.777	0					5	3	2	0	0	0	0.42902	1	7695	7695		39.253	2.0937	1	120170	+		2004	19914	1197	1204	2021	2021					0.02104900754704886
AKNHLSRAHG	10	Unmodified	_AKNHLSRAHG_					0	0	0		nc|ENSG00000062524|P29376-2|LTK;nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;LTK|p.D681Tfs*76|1|0.2|ENSG00000062524|chr15:41504852-41504852|C/-|frameshift_variant;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK	nc|ENSG00000062524|P29376-2|LTK	nc|ENSG00000062524|P29376-2|LTK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7986450195312	2	545.796863	1089.57917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.046	1	34.046	33.546	34.546	0								0	0	0	0.19992	1	12013	12013		64.207	18.235	1				2005	1330	1198	1205	2022	2022					0.03796717374689251
AKNIGTKYEE	10	Unmodified	_AKNIGTKYEE_					0	0	0			REV__CWF19L1|p.K61N|1|0.24|ENSG00000095485|chr10:100260970-100260970|C/A|missense_variant	REV__CWF19L1|p.K61N|1|0.24|ENSG00000095485|chr10:100260970-100260970|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.7960205078125	2	576.798403	1151.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.703	1	28.703	28.203	29.203	0								0	0	0	0.4201	1	9279	9279		13.454	1.943	1		+		2006	12654	1199	1206	2023	2023					0.012525029181688296
AKNPVPQL	8	Unmodified	_AKNPVPQL_					0	0	0		ENST00000484300.1_1_15:57976864-58006874:+|nuORF;nc|ENSG00000255529|P0CAP2-2|POLR2M;ENST00000494490.1_3_15:57999305-58006874:+|nuORF;nc|ENSG00000255529|P0CAP2-3|POLR2M;ENSG00000255529|ENST00000299638|POLR2M	ENST00000484300.1_1_15:57976864-58006874:+|nuORF	ENST00000484300.1_1_15:57976864-58006874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.75830078125	2	433.758352	865.502152	-0.78405	-0.00034009	1.3303	0.00057704	0.54627	0.00023695	433.75887743587884	28.469	0.145	28.469	28.407	28.552	0					9	5	2	0	0	0	0.57802	1	9177	9177		52.299	5.5327	1	147480			2007	8019	1200	1207	2024	2024					0.06402106105645089
AKNPYNIAL	9	Unmodified	_AKNPYNIAL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.28216552734375	2	502.282192	1002.54983	-2.0749	-0.0010422	1.739	0.00087348	-0.33587	-0.0001687	502.28318064835423	30.774	0.70525	30.774	30.494	31.199	0					55	19	5	0	0	0	0.26904	1	10484	10484		53.351	3.9099	1	2689700	+		2008	13220	1201	1208	2025	2025					0.0486576030583592
AKPETIHLQF	10	Unmodified	_AKPETIHLQF_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.22021484375	3	395.220513	1182.63971	0.58064	0.00022948	-0.56737	-0.00022424	0.013268	5.2437E-06	395.2202275288873	26.239	0.10186	26.239	26.162	26.264	0					7	3	3	0	0	0	0.58189	1	7951	7951		36.447	9.7538	1	60211	+		2009	21069	1202	1209	2026	2026					0.05569389914421663
AKPHKTTIA	9	Unmodified	_AKPHKTTIA_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.862548828125	3	322.862548	965.565815	-0.024315	-7.8503E-06	-0.35288	-0.00011393	-0.37719	-0.00012178	322.86245284890236	19.155	0.098034	19.155	19.107	19.205	0					4	2	2	0	0	0	0.61124	1	5159	5159		17.468	0	1	72380			2010	3116	1203	1210	2027	2027					0.08165466542743616
AKPLETDQI	9	Unmodified	_AKPLETDQI_					0	0	0			REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD	REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.77679443359375	2	507.776939	1013.53933	0.17782	9.029E-05	-2.8106	-0.0014272	-2.6328	-0.0013369	508.27631946013753	36.55	0.30015	36.55	36.394	36.695	0					18	8	3	0	0	0	0.22377	1	14249	14249		58.782	7.4465	1	157760	+		2011	17073	1204	1211	2028	2028					0.033097328607595955
AKPMPGGR	8	Unmodified	_AKPMPGGR_					0	0	0			REV__MIA|p.L30Afs*3|1|0.36|ENSG00000261857|chr19:40775626-40775627|-/A|frameshift_variant	REV__MIA|p.L30Afs*3|1|0.36|ENSG00000261857|chr19:40775626-40775627|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.2262878417969	2	407.223623	812.432692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.106	1	17.106	16.606	17.606	0								0	0	0	1.7419	1	4223	4223		38.806	1.647	1		+		2012	20883	1205	1212	2029	2029					0.018973238852595387
AKPQPLASL	9	Unmodified	_AKPQPLASL_					0	0	0			REV__ENSG00000142102|ENST00000409548|PGGHG	REV__ENSG00000142102|ENST00000409548|PGGHG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7790832519531	2	462.779285	923.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.251	1	42.251	41.751	42.751	0								0	0	0	0.2591	1	16853	16853		42.396	3.59	1		+		2013	15141	1206	1213	2030	2030					0.07918661794167292
AKPSDLQLS	9	Unmodified	_AKPSDLQLS_					0	0	0		MLC1|p.C46Afs*12|1|0.57|ENSG00000100427|chr22:50084768-50084768|G/-|frameshift_variant;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1	MLC1|p.C46Afs*12|1|0.57|ENSG00000100427|chr22:50084768-50084768|G/-|frameshift_variant	MLC1|p.C46Afs*12|1|0.57|ENSG00000100427|chr22:50084768-50084768|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7641906738281	2	479.763832	957.513111	-0.30929	-0.00014839	0.99762	0.00047862	0.68833	0.00033024	479.76505147225555	26.599	0.19476	26.599	26.509	26.704	0					6	4	2	0	0	0	0.44593	1	8603	8603		37.812	0.78304	1	63714			2014	2026	1207	1214	2031	2031					0.032654636892857525
AKPSGPGVQDC	11	Unmodified	_AKPSGPGVQDC_					0	0	0		ENSG00000275718|ENST00000617897|CCL15	ENSG00000275718|ENST00000617897|CCL15	ENSG00000275718|ENST00000617897|CCL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7514038085938	2	529.750398	1057.48624	0.90287	0.0004783	0.93499	0.00049531	1.8379	0.00097361	529.7510236134716	20.538	0.16705	20.538	20.428	20.595	0					9	3	3	0	0	0	0.44025	1	6683	6683		48.602	0.64203	1	771850			2015	8110	1208	1215	2032	2032					-0.040199681935291665
AKQETLIF	8	Unmodified	_AKQETLIF_					0	0	0			REV__ENST00000523562.5_1_16:67203334-67203685:+|nuORF	REV__ENST00000523562.5_1_16:67203334-67203685:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.271240234375	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.184	1	39.184	38.684	39.684	0								0	0	0	1.7419	1	15403	15403		27.882	2.4321	1		+		2016	19972	1209	1216	2033	2033					0.05170955557287016
AKQLFSSL	8	Unmodified	_AKQLFSSL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7555847167969	2	447.258185	892.501818	0.84096	0.00037613	-2.2293	-0.00099708	-1.3884	-0.00062096	447.25745796555134	34.236	0.599	34.236	34.085	34.684	0					28	12	4	0	0	0	0.68754	1	13235	13235		35.201	3.2459	1	1497500			2017	8001	1210	1217	2034	2034					0.05126686385801804
AKQTLISV	8	Unmodified	_AKQTLISV_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.265625	2	430.26601	858.517468	-0.54773	-0.00023567	-0.011279	-4.8531E-06	-0.55901	-0.00024052	430.2659912019884	29.86	0.24894	29.86	29.762	30.011	0					12	6	3	0	0	0	0.32597	1	10708	10708		79.713	2.866	1	491260			2018	1890	1211	1218	2035	2035					0.08254972902841473
AKQTLISV	8	Unmodified	_AKQTLISV_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.26531982421875	2	430.26601	858.517468	-0.87468	-0.00037635	-0.07232	-3.1117E-05	-0.947	-0.00040746	430.2660866064909	29.622	0.11533	29.622	29.538	29.653	0					7	4	2	0	0	0	0.66989	1	9652	9652		37.812	4.9991	1	136940			2019	1890	1211	1218	2036	2036					0.08254972902841473
AKQVEQHQE	9	Unmodified	_AKQVEQHQE_					0	0	0			REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2747192382812	2	548.772719	1095.53089	0.27343	0.00015005	1.4952	0.00082052	1.7686	0.00097057	548.7730547229147	11.299	0.055864	11.299	11.26	11.316	0					4	2	2	0	0	0	0.61124	1	2282	2282		14.865	0	1	29676	+		2020	13249	1212	1219	2037	2037					-0.013058210558483552
AKRAVADY	8	Unmodified	_AKRAVADY_					0	0	0			REV__ZHX2|p.M716Wfs*31|1|0.71|ENSG00000178764|chr8:122953653-122953653|C/-|frameshift_variant	REV__ZHX2|p.M716Wfs*31|1|0.71|ENSG00000178764|chr8:122953653-122953653|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2459411621094	2	447.245609	892.476666	0.049909	2.2321E-05	-0.34523	-0.0001544	-0.29532	-0.00013208	447.2455983208558	20.999	0.098856	20.999	20.942	21.041	0					4	2	2	0	0	0	0.59411	1	6610	6610		50.025	9.4519	1	82981	+		2021	16744	1213	1220	2038	2038					0.026126315832243563
AKREETKAM	9	Unmodified	_AKREETKAM_					0	0	0		ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2828369140625	2	532.281866	1062.54918	0.12347	6.5721E-05	1.668	0.00088784	1.7915	0.00095356	532.2825324187888	44.429	0.47103	44.429	44.218	44.689	0					50	28	2	0	0	0	0.60749	1	16717	16717		20.947	0.95016	1	80076			2022	4606	1214	1221	2039	2039					0.020405975944640886
AKRERPFY	8	Unmodified	_AKRERPFY_					0	0	0			REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7931518554688	2	533.793258	1065.57196	-1.3125	-0.0007006	0.92961	0.00049622	-0.38287	-0.00020438	533.7936643089978	29.965	0.24809	29.965	29.858	30.106	0					10	6	2	0	0	0	0.39542	1	10132	10132		71.378	71.378	1	478680	+		2023	18044	1215	1222	2040	2040					0.04179984774282275
AKRFNKDLI	9	Unmodified	_AKRFNKDLI_					0	0	0			REV__ENSG00000119041|ENST00000263956|GTF3C3	REV__ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.88885498046875	3	368.888986	1103.64513	-1.0089	-0.00037218	0.24878	9.1772E-05	-0.76015	-0.00028041	368.8891527607613	17.249	0.11657	17.249	17.168	17.284	0					5	3	2	0	0	0	0.36892	1	4297	4297		44.377	11.565	1	165450	+		2024	14232	1216	1223	2041	2041					0.09745113496887825
AKRGKAAASPP	11	Unmodified	_AKRGKAAASPP_					0	0	0			REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.312255859375	2	527.311815	1052.60908	0.32752	0.0001727	0.18569	9.7917E-05	0.51321	0.00027062	527.3119713674116	21.855	0.30143	21.855	21.746	22.047	0					17	9	3	0	0	0	0.41029	1	6350	6350		33.922	4.7516	1	333430	+		2025	16264	1217	1224	2042	2042					0.08487656320016868
AKRIDICPN	9	Unmodified	_AKRIDICPN_					0	0	0			REV__ENSG00000179630|ENST00000325686|LACC1	REV__ENSG00000179630|ENST00000325686|LACC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.8541564941406	3	343.855176	1028.5437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.138	1	20.138	19.638	20.638	0								0	0	0	0.3119	1	5340	5340		32.812	2.4947	1		+		2026	16785	1218	1225	2043	2043					0.03056918802690234
AKSEAGLSLHT	11	Unmodified	_AKSEAGLSLHT_					0	0	0			REV__nc|ENSG00000173389|Q8N6M8-2|IQCF1	REV__nc|ENSG00000173389|Q8N6M8-2|IQCF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3007202148438	2	557.29857	1112.58259	3.4943	0.0019474	-1.3572	-0.00075638	2.1371	0.001191	557.2989063446965	33.815	0.36908	33.815	33.716	34.085	0					15	8	3	0	0	0	0.21174	1	12911	12911		72.879	1.0018	1	1571500	+		2027	16508	1219	1226	2044	2044					0.030799226380622713
AKSLKQSVF	9	Unmodified	_AKSLKQSVF_					0	0	0		MTBP|p.K383Sfs*12|1|0.11|ENSG00000172167|chr8:120470916-120470916|A/-|frameshift_variant	MTBP|p.K383Sfs*12|1|0.11|ENSG00000172167|chr8:120470916-120470916|A/-|frameshift_variant	MTBP|p.K383Sfs*12|1|0.11|ENSG00000172167|chr8:120470916-120470916|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53424072265625	3	336.53432	1006.58113	1.4876	0.00050062	-1.3915	-0.00046828	0.096077	3.2333E-05	336.5337967162917	25.098	6.4193	25.098	24.447	30.866	0					183	131	2	0	0	0	0.5741	1	10821	10821		25.126	7.658	1	646530			2028	11382	1220	1227	2045	2045					0.07810333339944009
AKSLKQSVF	9	Unmodified	_AKSLKQSVF_					0	0	0		MTBP|p.K383Sfs*12|1|0.11|ENSG00000172167|chr8:120470916-120470916|A/-|frameshift_variant	MTBP|p.K383Sfs*12|1|0.11|ENSG00000172167|chr8:120470916-120470916|A/-|frameshift_variant	MTBP|p.K383Sfs*12|1|0.11|ENSG00000172167|chr8:120470916-120470916|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.71	1	37.71	37.21	38.21	0								0	0	0	0.35899	1	14766	14766		23.523	6.1577	1				2029	11382	1220	1227	2046	2046					0.07810333339944009
AKSRPGSPVL	10	Unmodified	_AKSRPGSPVL_					0	0	0		ENSG00000138136|ENST00000370193|LBX1	ENSG00000138136|ENST00000370193|LBX1	ENSG00000138136|ENST00000370193|LBX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	337.8695983886719	3	337.869703	1010.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.693	1	14.693	14.193	15.193	0								0	0	0	0.33707	1	3068	3068		45.022	4.964	1				2030	4232	1221	1228	2047	2047					0.08240851571486019
AKTEVTRLVE	10	Unmodified	_AKTEVTRLVE_					0	0	0			REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.32958984375	2	573.32987	1144.64519	1.0683	0.00061247	0.023604	1.3533E-05	1.0919	0.000626	573.3295325612045	34.283	0.12907	34.283	34.233	34.362	0					10	6	2	0	0	0	0.4287	1	11207	11207		53.089	4.901	1	91339	+		2031	13151	1222	1229	2048	2048					0.0786506870622361
AKTLQDLL	8	Unmodified	_AKTLQDLL_					0	0	0			REV__ENST00000510524.5_1_3:129170769-129177513:+|nuORF	REV__ENST00000510524.5_1_3:129170769-129177513:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2731628417969	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.112	1	38.112	37.612	38.612	0								0	0	0	1.7419	1	14957	14957		39.253	2.0937	1		+		2032	19868	1223	1230	2049	2049					0.07378955557271638
AKVVSNLHL	9	Unmodified	_AKVVSNLHL_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.53448486328125	3	327.534431	979.581465	0.6383	0.00020906	-0.42097	-0.00013788	0.21732	7.1181E-05	327.53430071254047	24.576	0.17708	24.576	24.45	24.627	0					7	4	2	0	0	0	0.5654	1	8303	8303		32.812	6.1195	1	272460	+		2033	16278	1224	1231	2050	2050					0.09085753059810031
ALAAAGYDVEK	11	Unmodified	_ALAAAGYDVEK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000187475|ENST00000338379|H1-6	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2879638671875	2	554.287671	1106.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.169	1	29.169	28.669	29.669	0								0	0	0	0.34077	1	10771	10771		46.457	11.256	1				2034	7222;6080;3386;7195	1225	1232	2051	2051					0.011771178894605328
ALAAALLPPA	10	Unmodified	_ALAAALLPPA_					0	0	0			REV__ENST00000576147.1_2_16:67919557-67920159:+|nuORF	REV__ENST00000576147.1_2_16:67919557-67920159:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2842102050781	2	454.284203	906.553853	-0.56181	-0.00025522	0.29009	0.00013178	-0.27172	-0.00012344	454.28428997991364	26.334	1.5246	26.334	25.362	26.886	0					100	34	4	0	0	0	0.41345	1	9151	9151		54.765	2.4655	1	1970200	+		2035	17149	1226	1233	2052	2052					0.09683849799546351
ALAEATVALA	10	Unmodified	_ALAEATVALA_					0	0	0		MTIF2|p.G590Efs*2|2|0.27|ENSG00000085760|chr2:55240114-55240114|T/-|frameshift_variant;ENSG00000085760|ENST00000263629|MTIF2	MTIF2|p.G590Efs*2|2|0.27|ENSG00000085760|chr2:55240114-55240114|T/-|frameshift_variant	MTIF2|p.G590Efs*2|2|0.27|ENSG00000085760|chr2:55240114-55240114|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2685852050781	2	465.26875	928.522947	-0.43956	-0.00020452	-0.34177	-0.00015902	-0.78134	-0.00036353	465.26855642168874	27.478	0.17001	27.478	27.395	27.565	0					9	5	2	0	0	0	0.42631	1	8476	8476		53.351	7.3995	1	78114			2036	1734	1227	1234	2053	2053					0.05582651694658125
ALAEKTSHV	9	Unmodified	_ALAEKTSHV_					0	0	0		ENST00000409811.5_2_2:120015228-120020911:+|nuORF;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	ENST00000409811.5_2_2:120015228-120020911:+|nuORF	ENST00000409811.5_2_2:120015228-120020911:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2637634277344	2	478.263999	954.513445	-0.43597	-0.00020851	0.044797	2.1425E-05	-0.39117	-0.00018708	478.26400979538215	20.404	0.16506	20.404	20.297	20.462	0					5	3	2	0	0	0	0.055856	1	6617	6617		93.195	5.4412	1	536940			2037	2881	1228	1235	2054	2054					0.034368834091424105
ALAGAGEPAAK	11	Unmodified	_ALAGAGEPAAK_					0	0	0			REV__nc|ENSG00000060069|Q9Y5B0-4|CTDP1	REV__nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2637023925781	2	478.263999	954.513445	-0.28211	-0.00013492	-1.094	-0.00052323	-1.3761	-0.00065815	478.26393192435233	20.518	0.32648	20.518	20.373	20.699	0					13	7	3	0	0	0	0.22009	1	6387	6387		71.877	3.0906	1	612110	+		2038	13079	1229	1236	2055	2055					0.03436883409119673
ALAGSVGPPG	10	Unmodified	_ALAGSVGPPG_					0	0	0			REV__ENSG00000065618|ENST00000648076|COL17A1	REV__ENSG00000065618|ENST00000648076|COL17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.2266540527344	2	413.226885	824.439217	-0.91354	-0.0003775	0.81796	0.000338	-0.095582	-3.9497E-05	413.22707833153544	15.328	0.75896	15.328	15.194	15.953	0					44	27	2	0	0	0	0.68218	1	3451	3451		24.203	1.1603	1	172880	+		2039	13120	1230	1237	2056	2056					0.019975403176204054
ALAKDKFY	8	Unmodified	_ALAKDKFY_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.26409912109375	2	478.26601	954.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.219	1	20.219	19.719	20.719	0								0	0	0	1.7419	1	5610	5610		53.351	2.016	1				2040	3690	1231	1238	2057	2057					0.03838972902849491
ALAKNGVVVKQ	11	Unmodified	_ALAKNGVVVKQ_					0	0	0			REV__TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	REV__TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.8509521484375	2	563.850773	1125.68699	1.2469	0.00070305	-1.3339	-0.00075214	-0.087062	-4.909E-05	563.8502184392389	23.332	0.12298	23.332	23.249	23.372	0					5	3	2	0	0	0	0.58789	1	6743	6743		37.812	1.3648	1	58791	+		2041	13604	1232	1239	2058	2058					0.12917669185435443
ALAKPLTQL	9	Unmodified	_ALAKPLTQL_					0	0	0		GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant;GRID2IP|p.S1123Lfs*62|1|0.41|ENSG00000215045|chr7:6501814-6501814|G/-|frameshift_variant;ENSG00000215045|ENST00000457091|GRID2IP	GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant	GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.8026123046875	2	477.80276	953.590967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.122	1	40.122	39.622	40.622	0								0	0	0	0.30504	1	15907	15907		34.173	2.2177	1				2042	7824	1233	1240	2059	2059					0.11231521345325746
ALALHGATGL	10	Unmodified	_ALALHGATGL_					0	0	0			REV__GMPPB|p.P89H|1|0.34|ENSG00000173540|chr3:49723108-49723108|G/T|missense_variant	REV__GMPPB|p.P89H|1|0.34|ENSG00000173540|chr3:49723108-49723108|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2686462402344	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.419	1	19.419	18.919	19.919	0								0	0	0	0.40002	1	5021	5021		30.504	0.6621	1		+		2043	20695	1234	1241	2060	2060					0.059254911343600725
ALALNFIY	8	Unmodified	_ALALNFIY_					0	0	0			REV__nc|ENSG00000082556|P41145-2|OPRK1	REV__nc|ENSG00000082556|P41145-2|OPRK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.7633361816406	2	462.763104	923.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.023	1	43.023	42.523	43.523	0								0	0	0	1.7419	1	14123	14123		37.028	1.8278	1		+		2044	13320	1235	1242	2061	2061					0.04683874391173504
ALALVEVYR	9	Unmodified	_ALALVEVYR_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.2060546875	3	345.206203	1032.59678	-0.70281	-0.00024261	0.70608	0.00024374	0.0032651	1.1271E-06	345.20624517628386	25.695	0.28174	25.695	25.607	25.889	0					10	5	3	0	0	0	0.54267	1	8041	8041		27.882	4.3595	1	249590			2045	5962	1236	1243	2062	2062					0.08178619856971636
ALALVSMGF	9	Oxidation (M)	_ALALVSM(Oxidation (M))GF_		ALALVSM(1)GF		ALALVSM(77)GF	0	0	1		ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7497863769531	2	462.746596	923.478639	0.71264	0.00032977	3.1528	0.001459	3.8654	0.0017887	462.7477594850535	37.597	0.86174	37.597	36.991	37.853	0					54	26	3	0	0	0	0.11118	1	14678	14678		76.847	8.3619	1	314750			2046	7983	1237	1244	2063	2063		327			0.01383924276842663
ALANVSIEK	9	Unmodified	_ALANVSIEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7738952636719	2	472.7742	943.533846	0.2327	0.00011001	-0.48537	-0.00022947	-0.25267	-0.00011945	472.77388419944765	28.58	0.25506	28.58	28.447	28.702	0					20	6	4	0	0	0	0.02429	1	10118	10118		114.89	29.979	1	510130			2047	3578	1238	1245	2064	2064					0.059820540689429436
ALANVSIEK	9	Unmodified	_ALANVSIEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7742614746094	2	472.7742	943.533846	-0.12255	-5.7939E-05	-0.12689	-5.9992E-05	-0.24944	-0.00011793	472.774036577674	28.589	0.21319	28.589	28.482	28.695	0					9	4	3	0	0	0	0.12834	1	10483	10483		72.879	18.103	1	278400			2048	3578	1238	1245	2065	2065					0.059820540689429436
ALANVSIEK	9	Unmodified	_ALANVSIEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7738342285156	2	472.7742	943.533846	-0.5744	-0.00027156	1.4723	0.00069606	0.89788	0.0004245	472.7752767324733	28.518	0.417	28.518	28.409	28.826	0					14	8	3	0	0	0	0.04067	1	10351	10351		98.582	5.3865	1	733660			2049	3578	1238	1245	2066	2066					0.059820540689429436
ALANVSIEK	9	Unmodified	_ALANVSIEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7738952636719	2	472.7742	943.533846	0.63449	0.00029997	-1.1211	-0.00053002	-0.48659	-0.00023005	472.7736811676025	28.55	0.21444	28.55	28.443	28.658	0					10	4	3	0	0	0	0.27123	1	10368	10368		53.089	10.225	1	605280			2050	3578	1238	1245	2067	2067					0.059820540689429436
ALAPSMLKI	9	Unmodified	_ALAPSMLKI_					0	0	0		ENSG00000196834|ENST00000451531|POTEI	ENSG00000196834|ENST00000451531|POTEI	ENSG00000196834|ENST00000451531|POTEI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2853088378906	2	472.285889	942.557224	0.58684	0.00027716	-1.4212	-0.00067122	-0.83438	-0.00039407	472.28529050223887	38.826	0.28376	38.826	38.707	38.99	0					23	10	3	0	0	0	0.20551	1	15240	15240		60.972	0	1	236680			2051	7397	1239	1246	2068	2068					0.08364776581913702
ALAPVQPHA	9	Unmodified	_ALAPVQPHA_					0	0	0			REV__ZBTB20|p.P692Lfs*43|20|0.32|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant	REV__ZBTB20|p.P692Lfs*43|20|0.32|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.25531005859375	2	452.255977	902.497401	-1.1953	-0.00054058	3.2438	0.001467	2.0485	0.00092644	452.2563975787822	26.257	0.35668	26.257	26.086	26.443	0					24	11	3	0	0	0	0.47428	1	8184	8184		35.201	6.9464	1	103260	+		2052	22301	1240	1247	2069	2069					0.042252219628949206
ALAPWIPVG	9	Unmodified	_ALAPWIPVG_					0	0	0			REV__ENST00000321582.9_1_9:124801621-124854975:-|nuORF	REV__ENST00000321582.9_1_9:124801621-124854975:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2682189941406	2	462.271096	922.527639	-2.4618	-0.001138	-2.3843	-0.0011022	-4.8461	-0.0022402	462.26976211749115	19.445	0.14745	19.445	19.345	19.492	0					6	3	2	0	0	0	0.31222	1	5292	5292		49.211	6.8147	1	66067	+		2053	18328	1241	1248	2070	2070					0.06327580628078522
ALASVVIHK	9	Unmodified	_ALASVVIHK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2947082519531	2	469.295102	936.575651	-0.63004	-0.00029567	0.12072	5.6651E-05	-0.50932	-0.00023902	469.29509659665945	25.7	0.13231	25.7	25.612	25.744	0					8	3	3	0	0	0	0.028876	1	8820	8820		110.12	36.145	1	401640			2054	3788	1242	1249	2071	2071					0.10482654548127357
ALASVVIHK	9	Unmodified	_ALASVVIHK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2952880859375	2	469.295102	936.575651	-1.182	-0.00055473	1.6221	0.00076127	0.4401	0.00020654	469.2959791353408	25.453	0.10663	25.453	25.373	25.479	0					8	4	2	0	0	0	0.16002	1	7916	7916		66.429	24.033	1	64907			2055	3788	1242	1249	2072	2072					0.10482654548127357
ALASVVIHK	9	Unmodified	_ALASVVIHK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.29486083984375	2	469.295102	936.575651	0.62193	0.00029187	-1.2827	-0.00060195	-0.66073	-0.00031008	469.2945840207062	25.692	0.16895	25.692	25.586	25.755	0					8	3	3	0	0	0	0.13267	1	9165	9165		71.877	15.156	1	355640			2056	3788	1242	1249	2073	2073					0.10482654548127357
ALASVVIHK	9	Unmodified	_ALASVVIHK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.29473876953125	2	469.295102	936.575651	-2.1975	-0.0010313	1.725	0.00080955	-0.47247	-0.00022173	469.2959707701808	25.469	0.12498	25.469	25.414	25.539	0					6	3	2	0	0	0	0.12239	1	8112	8112		74.255	30.138	1	84428			2057	3788	1242	1249	2074	2074					0.10482654548127357
ALATISDHK	9	Unmodified	_ALATISDHK_					0	0	0		ENST00000610009.5_1_4:4650831-4651211:+|nuORF	ENST00000610009.5_1_4:4650831-4651211:+|nuORF	ENST00000610009.5_1_4:4650831-4651211:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2640075683594	2	478.263999	954.513445	-0.061174	-2.9257E-05	-0.76728	-0.00036696	-0.82845	-0.00039622	478.2635958604139	20.171	0.12186	20.171	20.092	20.214	0					7	4	2	0	0	0	0.39215	1	5359	5359		42.396	1.618	1	85282			2058	11103	1243	1250	2075	2075					0.03436883409131042
ALAVLAAAAN	10	Unmodified	_ALAVLAAAAN_					0	0	0			REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7633056640625	2	442.763635	883.512717	-0.5065	-0.00022426	-0.16236	-7.1888E-05	-0.66886	-0.00029615	442.7636245611255	22.696	0.26682	22.696	22.538	22.805	0					8	5	2	0	0	0	0.24485	1	7578	7578		73.975	23.95	1	185750	+		2059	16488	1244	1251	2076	2076					0.0663008876007325
ALAWTSLAL	9	Unmodified	_ALAWTSLAL_					0	0	0		YIF1A|p.S239L|1|0.31|ENSG00000174851|chr11:66284892-66284892|G/A|missense_variant	YIF1A|p.S239L|1|0.31|ENSG00000174851|chr11:66284892-66284892|G/A|missense_variant	YIF1A|p.S239L|1|0.31|ENSG00000174851|chr11:66284892-66284892|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.27410888671875	2	473.273835	944.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.308	1	47.308	46.808	47.808	0								0	0	0	0.15865	1	18900	18900		57.811	4.4598	1				2060	23121	1245	1252	2077	2077					0.05863259419891165
ALCFRVSPL	9	Unmodified	_ALCFRVSPL_					0	0	0			REV__ENST00000442114.6_2_6:43971589-43971727:+|nuORF	REV__ENST00000442114.6_2_6:43971589-43971727:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.28125	2	503.281137	1004.54772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.888	1	43.888	43.388	44.388	0								0	0	0	0.35507	1	14308	14308		24.203	0	1		+		2061	19247	1246	1253	2078	2078					0.04563008296406679
ALCIAVQSAP	10	Unmodified	_ALCIAVQSAP_					0	0	0			REV__ENST00000296479.9_1_3:51747995-51752125:+|nuORF	REV__ENST00000296479.9_1_3:51747995-51752125:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.76495361328125	2	486.762778	971.511002	0.41267	0.00020087	3.961	0.0019281	4.3737	0.0021289	486.7643510621968	18.026	0.11507	18.026	17.969	18.084	0					4	2	2	0	0	0	0.65895	1	4635	4635		15.642	0	1	71342	+		2062	15960	1247	1254	2079	2079					0.024107116798290917
ALCYHFLT	8	Unmodified	_ALCYHFLT_					0	0	0		ENSG00000128951|ENST00000331200|DUT	ENSG00000128951|ENST00000331200|DUT	ENSG00000128951|ENST00000331200|DUT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2395324707031	2	484.238938	966.463324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.412	1	42.412	41.912	42.912	0								0	0	0	1.7419	1	13980	13980		31.579	9.8766	1				2063	3574	1248	1255	2080	2080					-0.02124942520379136
ALDRRRTK	8	Unmodified	_ALDRRRTK_					0	0	0			REV__nc|ENSG00000111641|P46087-2|NOP2	REV__nc|ENSG00000111641|P46087-2|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.31109619140625	2	508.309606	1014.60466	2.9721	0.0015107	-0.15826	-8.0448E-05	2.8138	0.0014303	508.30944355761704	41.592	0.41331	41.592	41.465	41.878	0					27	11	4	0	0	0	0.42778	1	16540	16540		66.429	66.429	1	1841100	+		2064	13973	1249	1256	2081	2081					0.09794191897140081
ALDTLGLRGPL	11	Unmodified	_ALDTLGLRGPL_					0	0	0		ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.3347778320312	2	563.334956	1124.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.009	1	23.009	22.509	23.509	0								0	0	0	0.38772	1	6951	6951		37.812	4.9991	1				2065	7701	1250	1257	2082	2082					0.09801676431470696
ALDVVFVI	8	Unmodified	_ALDVVFVI_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2637634277344	2	438.265479	874.516405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.127	1	27.127	26.627	27.627	0								0	0	0	1.7419	1	8835	8835		46.766	4.3703	1				2066	4485	1251	1258	2083	2083					0.0741275853396246
ALDVVLKGE	9	Unmodified	_ALDVVLKGE_					0	0	0		ENST00000572684.1_1_17:1944307-1944574:+|nuORF	ENST00000572684.1_1_17:1944307-1944574:+|nuORF	ENST00000572684.1_1_17:1944307-1944574:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.27642822265625	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.681	1	30.681	30.181	31.181	0								0	0	0	0.091069	1	11386	11386		74.255	1.3758	1				2067	10813	1252	1259	2084	2084					0.0650293821172454
ALELKQCSPI	10	Unmodified	_ALELKQCSPI_					0	0	0			REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.3014526367188	2	551.302267	1100.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.49	1	40.49	39.99	40.99	0								0	0	0	0.33107	1	15956	15956		45.972	1.5951	1		+		2068	20942	1253	1260	2085	2085					0.04370938914121325
ALEMGVSSLM	10	Unmodified	_ALEMGVSSLM_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2532348632812	2	519.253928	1036.4933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.75	1	38.75	38.25	39.25	0								0	0	0	0.40446	1	13849	13849		29.15	1.2673	1				2069	2703	1254	1261	2086	2086					-0.023483716373220886
ALENKGSPRA	10	Unmodified	_ALENKGSPRA_					0	0	0		ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.1938171386719	3	348.192845	1041.55671	0.40176	0.00013989	2.7051	0.00094189	3.1068	0.0010818	348.1937487386079	25.305	0.16081	25.305	25.186	25.347	0					6	4	2	0	0	0	0.71484	1	7612	7612		14.086	0	1	46353			2070	8742	1255	1262	2087	2087					0.037590731864384
ALEPTPAAVAP	11	Unmodified	_ALEPTPAAVAP_					0	0	0			REV__ITGA7|p.L22Pfs*81|1|0.5|ENSG00000135424|chr12:55707618-55707619|-/G|frameshift_variant	REV__ITGA7|p.L22Pfs*81|1|0.5|ENSG00000135424|chr12:55707618-55707619|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7872314453125	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.774	1	34.774	34.274	35.274	0								0	0	0	0.44116	1	12341	12341		27.882	0	1		+		2071	20767	1256	1263	2088	2088					0.04370323240414109
ALFDGVVSK	9	Unmodified	_ALFDGVVSK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2641296386719	2	468.263468	934.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.13	1	37.13	36.63	37.63	0								0	0	0	0.17378	1	12167	12167		54.776	3.4409	1				2072	4987	1257	1264	2089	2089					0.04250669040243338
ALFDGVVSK	9	Unmodified	_ALFDGVVSK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2631530761719	2	468.263468	934.512382	0.30602	0.0001433	-0.72845	-0.00034111	-0.42244	-0.00019781	468.26311972375385	37.426	0.32475	37.426	37.324	37.649	0					18	9	3	0	0	0	0.10915	1	14196	14196		77.318	23.966	1	611370			2073	4987	1257	1264	2090	2090					0.04250669040243338
ALFDGVVSK	9	Unmodified	_ALFDGVVSK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.26348876953125	2	468.263468	934.512382	-0.64423	-0.00030167	0.42202	0.00019762	-0.22221	-0.00010405	468.26368638051474	37.421	0.17564	37.421	37.349	37.525	0					10	5	2	0	0	0	0.21263	1	14188	14188		60.118	16.001	1	196670			2074	4987	1257	1264	2091	2091					0.04250669040243338
ALFDGVVSK	9	Unmodified	_ALFDGVVSK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2630920410156	2	468.263468	934.512382	0.63632	0.00029797	-0.99089	-0.000464	-0.35456	-0.00016603	468.26296467204793	37.39	0.37159	37.39	37.226	37.598	0					23	11	3	0	0	0	0.15163	1	14614	14614		67.494	22.963	1	961540			2075	4987	1257	1264	2092	2092					0.04250669040243338
ALFDGVVSK	9	Unmodified	_ALFDGVVSK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2629699707031	2	468.263468	934.512382	-0.70493	-0.00033009	0.74998	0.00035119	0.045045	2.1093E-05	468.26351932697753	37.195	0.21732	37.195	37.112	37.329	0					20	11	2	0	0	0	0.10915	1	13310	13310		77.318	20.597	1	110990			2076	4987	1257	1264	2093	2093					0.04250669040243338
ALFDGVVSK	9	Unmodified	_ALFDGVVSK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2630615234375	2	468.263468	934.512382	0.5827	0.00027286	-1.2558	-0.00058806	-0.67313	-0.0003152	468.2628793372488	37.357	0.50467	37.357	37.203	37.708	0					18	10	3	0	0	0	0.16806	1	14609	14609		65.465	17.55	1	809980			2077	4987	1257	1264	2094	2094					0.04250669040243338
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.3099365234375	2	504.310418	1006.60628	-0.10297	-5.1928E-05	-0.30452	-0.00015357	-0.40749	-0.0002055	504.3101912914958	44.989	0.25742	44.989	44.923	45.181	0					36	16	3	0	0	0	0.13267	1	14017	14017		71.877	36.259	1	390420			2078	7591	1258	1265	2095	2095					0.1032438814249872
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.3104248046875	2	504.310418	1006.60628	0.76973	0.00038818	0.32695	0.00016489	1.0967	0.00055307	504.3105948525788	45.287	0.13308	45.287	45.253	45.386	0					11	8	2	0	0	0	0.035062	1	16873	16873		104.06	50.705	1	70872			2079	7591	1258	1265	2096	2096					0.1032438814249872
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.30914306640625	2	504.310418	1006.60628	-0.056087	-2.8285E-05	-0.11372	-5.7348E-05	-0.1698	-8.5633E-05	504.31024967922446	45.298	0.37645	45.298	45.198	45.574	0					61	22	4	0	0	0	0.16002	1	16857	16857		66.429	29.27	1	1549100			2080	7591	1258	1265	2097	2097					0.1032438814249872
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.3097839355469	2	504.310418	1006.60628	0.11977	6.0399E-05	1.0483	0.00052867	1.1681	0.00058907	504.31093633466077	45.071	0.28265	45.071	44.986	45.269	0					34	17	3	0	0	0	0.07136	1	15385	15385		87.696	45.3	1	330160			2081	7591	1258	1265	2098	2098					0.1032438814249872
ALFQGIAKK	9	Unmodified	_ALFQGIAKK_					0	0	0		ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.30267333984375	2	488.302927	974.591301	-0.70849	-0.00034596	0.6709	0.0003276	-0.03759	-1.8355E-05	488.30314567933294	27.397	0.16804	27.397	27.338	27.506	0					7	3	3	0	0	0	0.018419	1	9932	9932		124.59	52.717	1	290760			2082	2811	1259	1266	2099	2099					0.10298941065195777
ALFRDKLK	8	Unmodified	_ALFRDKLK_					0	0	0		ENST00000584746.5_1_17:55944697-55948725:-|nuORF;CUEDC1|p.F320Nfs*12|1|0.3|ENSG00000180891|chr17:57868223-57868226|CAAA/-|frameshift_variant;nc|ENSG00000180891|Q9NWM3-2|CUEDC1;ENSG00000180891|ENST00000577830|CUEDC1	ENST00000584746.5_1_17:55944697-55948725:-|nuORF	ENST00000584746.5_1_17:55944697-55948725:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	330.87469482421875	3	330.874677	989.6022	-0.66763	-0.0002209	0.59572	0.00019711	-0.071909	-2.3793E-05	330.8748774217677	27.635	0.15853	27.635	27.555	27.713	0					13	5	3	0	0	0	0.74117	1	8825	8825		38.806	0	1	124340			2083	716	1260	1267	2100	2100					0.10698343439457858
ALFVAMNSK	9	Unmodified	_ALFVAMNSK_					0	0	0		ENSG00000111241|ENST00000228837|FGF6	ENSG00000111241|ENST00000228837|FGF6	ENSG00000111241|ENST00000228837|FGF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7668762207031	2	490.76532	979.516088	0.78479	0.00038515	3.0165	0.0014804	3.8013	0.0018655	490.7667146858327	12.271	0.068617	12.271	12.211	12.279	0					4	2	2	0	0	0	0.54267	1	2570	2570		27.882	2.4321	1	39764			2084	2656	1261	1268	2101	2101					0.02551015542451296
ALGAIDLIAS	10	Unmodified	_ALGAIDLIAS_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2760314941406	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.971	1	31.971	31.471	32.471	0								0	0	0	0.29716	1	11068	11068		51.335	7.2187	1		+		2085	13022	1262	1269	2102	2102					0.0650293821172454
ALGALPALTF	10	Unmodified	_ALGALPALTF_					0	0	0		nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1;ENST00000524486.5_1_11:803168-803522:-|nuORF	nc|ENSG00000177595|Q9HB75-3|PIDD1	nc|ENSG00000177595|Q9HB75-3|PIDD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.28961181640625	2	487.289485	972.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.744	1	42.744	42.244	43.244	0								0	0	0	0.28441	1	16171	16171		53.351	5.4358	1				2086	6674	1263	1270	2103	2103					0.0770383245398989
ALGALPALTF	10	Unmodified	_ALGALPALTF_					0	0	0		nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1;ENST00000524486.5_1_11:803168-803522:-|nuORF	nc|ENSG00000177595|Q9HB75-3|PIDD1	nc|ENSG00000177595|Q9HB75-3|PIDD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2895202636719	2	487.289485	972.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.564	1	42.564	42.064	43.064	0								0	0	0	0.3652	1	16995	16995		40.573	1.7665	1				2087	6674	1263	1270	2104	2104					0.0770383245398989
ALGCSTCRP	9	Unmodified	_ALGCSTCRP_					0	0	0			REV__VRTN|p.A151Pfs*224|1|0.42|ENSG00000133980|chr14:74357228-74357228|C/-|frameshift_variant	REV__VRTN|p.A151Pfs*224|1|0.42|ENSG00000133980|chr14:74357228-74357228|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2111511230469	2	454.209855	906.405157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.137	1	32.137	31.637	32.637	0								0	0	0	0.13522	1	11770	11770		63.306	7.8021	1		+		2088	22280	1264	1271	2105	2105					-0.051789474372981203
ALGESSPKL	9	Unmodified	_ALGESSPKL_					0	0	0			REV__nc|ENSG00000116747|P10155-3|RO60	REV__nc|ENSG00000116747|P10155-3|RO60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.25579833984375	2	451.2531	900.491647	0.70411	0.00031773	-0.95608	-0.00043143	-0.25196	-0.0001137	451.25266256960543	26.774	1.5056	26.774	26.017	27.523	0					51	30	3	0	0	0	0.32741	1	9516	9516		47.916	10.756	1	2576100	+		2089	14164	1265	1272	2106	2106					0.03742078660570769
ALGGRGPGGRP	11	Unmodified	_ALGGRGPGGRP_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;PRKCG|p.F614Sfs*41|1|0.2|ENSG00000126583|chr19:53906389-53906389|T/-|frameshift_variant;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7820739746094	2	497.780682	993.546811	2.9151	0.0014511	-0.7389	-0.00036781	2.1762	0.0010833	497.7804050939795	23.555	0.95756	23.555	22.805	23.763	0					57	19	5	0	0	0	0.67983	1	7871	7871		19.997	1.6724	1	2127400			2090	3482	1266	1273	2107	2107					0.04977929971721551
ALGGRGSWAAP	11	Unmodified	_ALGGRGSWAAP_					0	0	0		ENST00000474433.5_1_7:105254161-105283525:-|nuORF	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7767333984375	2	521.775065	1041.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.243	1	36.243	35.743	36.743	0								0	0	0	0.26434	1	12967	12967		56.721	1.9447	1				2091	9895	1267	1274	2108	2108					0.016471078775794012
ALGGTVGIVTG	11	Unmodified	_ALGGTVGIVTG_					0	0	0			REV__TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	REV__TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7737121582031	2	472.7742	943.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.958	1	26.958	26.458	27.458	0								0	0	0	0.30675	1	8255	8255		51.193	8.8546	1		+		2092	15820	1268	1275	2109	2109					0.05982054068954312
ALGLLQDIK	9	Unmodified	_ALGLLQDIK_					0	0	0		nc|ENSG00000154370|Q96F44-2|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11	nc|ENSG00000154370|Q96F44-2|TRIM11	nc|ENSG00000154370|Q96F44-2|TRIM11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.79931640625	2	485.800217	969.585882	0.83584	0.00040605	-2.499	-0.001214	-1.6631	-0.00080796	485.7990318657128	33.816	0.23771	33.816	33.767	34.005	0					15	5	3	0	0	0	0.0792	1	12924	12924		84.916	8.1414	1	380220			2093	5086	1269	1276	2110	2110					0.09987217482694177
ALGPPHVQPA	10	Unmodified	_ALGPPHVQPA_					0	0	0			REV__nc|ENSG00000095951|P15822-2|HIVEP1	REV__nc|ENSG00000095951|P15822-2|HIVEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7745666503906	2	493.774534	985.534515	0.64646	0.00031921	-1.7043	-0.00084152	-1.0578	-0.00052232	493.7742013428187	42.289	0.15472	42.289	42.213	42.368	0					15	7	3	0	0	0	0.45677	1	16600	16600		50.025	2.3672	1	66458	+		2094	13476	1270	1277	2111	2111					0.041168935086489
ALGRGRLSLE	10	Unmodified	_ALGRGRLSLE_					0	0	0			REV__ENST00000433465.1_1_21:46713271-46716280:+|nuORF	REV__ENST00000433465.1_1_21:46713271-46716280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.8805236816406	3	357.88049	1070.61964	0.72123	0.00025811	-0.7877	-0.0002819	-0.066467	-2.3787E-05	357.88026727981315	17.66	0.20871	17.66	17.579	17.788	0					9	5	3	0	0	0	0.68218	1	5036	5036		22.58	0.61977	1	641970	+		2095	19185	1271	1278	2112	2112					0.08715638974490503
ALGRPNTLNK	10	Unmodified	_ALGRPNTLNK_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.8818054199219	3	361.88049	1082.61964	1.4127	0.00051122	2.0677	0.00074826	3.4804	0.0012595	361.88128602792443	20.17	0.41608	20.17	20.062	20.478	0					18	8	3	0	0	0	0.59277	1	6509	6509		35.152	3.5178	1	1069600	+		2096	13307	1272	1279	2113	2113					0.08163638974451715
ALGRPNTLNK	10	Unmodified	_ALGRPNTLNK_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.8816833496094	3	361.88049	1082.61964	3.1175	0.0011281	-0.25531	-9.2393E-05	2.8621	0.0010358	361.8805506536033	20.18	0.41705	20.18	20.111	20.528	0					22	8	4	0	0	0	0.43008	1	6398	6398		52.937	15.125	1	1221400	+		2097	13307	1272	1279	2114	2114					0.08163638974451715
ALGSPLSLHL	10	Unmodified	_ALGSPLSLHL_					0	0	0		ENST00000590650.1_1_19:36236110-36236248:-|nuORF	ENST00000590650.1_1_19:36236110-36236248:-|nuORF	ENST00000590650.1_1_19:36236110-36236248:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.445	1	34.445	33.945	34.945	0								0	0	0	0.4201	1	13204	13204		21.686	0	1				2098	10955	1273	1280	2115	2115					0.07810333339955378
ALGTVALALAA	11	Unmodified	_ALGTVALALAA_					0	0	0		nc|ENSG00000148343|Q7L4E1-3|MIGA2;ENSG00000148343|ENST00000684074|MIGA2;ENST00000474534.1_1_9:131798902-131809484:+|nuORF;nc|ENSG00000148343|Q7L4E1-2|MIGA2	nc|ENSG00000148343|Q7L4E1-3|MIGA2	nc|ENSG00000148343|Q7L4E1-3|MIGA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.800048828125	2	485.800217	969.585882	-1.2383	-0.00060155	0.73716	0.00035811	-0.50111	-0.00024344	485.80061313458856	38.126	0.24201	38.126	37.949	38.191	0					21	13	2	0	0	0	0.3828	1	12832	12832		53.351	2.016	1	109790			2099	4823	1274	1281	2116	2116					0.09987217482682809
ALHEAAPSQL	10	Unmodified	_ALHEAAPSQL_					0	0	0		ENSG00000119280|ENST00000366663|C1orf198;nc|nan|Q9H425-2|C1orf198;nc|nan|Q9H425-3|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7748413085938	2	518.774731	1035.53491	0.056461	2.929E-05	0.27396	0.00014212	0.33042	0.00017141	518.7748869444171	28.117	0.2567	28.117	27.993	28.25	0					17	5	4	0	0	0	0.43008	1	9887	9887		52.937	5.2794	1	2213500			2100	3104	1275	1282	2117	2117					0.018562684378366612
ALHILPGAE	9	Unmodified	_ALHILPGAE_					0	0	0		ENST00000261455.8_2_1:212583858-212588226:-|nuORF	ENST00000261455.8_2_1:212583858-212588226:-|nuORF	ENST00000261455.8_2_1:212583858-212588226:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7630920410156	2	460.763635	919.512717	-2.5395	-0.0011701	1.2858	0.00059247	-1.2537	-0.00057765	460.76415421408535	32.701	0.2916	32.701	32.597	32.889	0					12	8	2	0	0	0	0.32741	1	11398	11398		47.916	7.1374	1	135130			2101	8296	1276	1283	2118	2118					0.04974088760093309
ALHPILPLK	9	Unmodified	_ALHPILPLK_					0	0	0		ENST00000485174.5_1_3:64670856-64727150:+|nuORF;ENST00000460833.1_1_3:64670856-64785255:+|nuORF	ENST00000485174.5_1_3:64670856-64727150:+|nuORF	ENST00000485174.5_1_3:64670856-64727150:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.2220764160156	3	334.555055	1000.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.359	1	11.359	10.859	11.859	0								0	0	0	0.3693	1	2150	2150		19.997	0.89325	1				2102	9725	1277	1284	2119	2119					0.1430410447894701
ALHQDDLLA	9	Unmodified	_ALHQDDLLA_					0	0	0			REV__ENST00000514938.1_1_22:50943733-50944613:-|nuORF	REV__ENST00000514938.1_1_22:50943733-50944613:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.26153564453125	2	498.261456	994.50836	-0.69839	-0.00034798	0.853	0.00042502	0.15461	7.7039E-05	498.2618021366749	33.472	0.52151	33.472	33.124	33.646	0					21	12	3	0	0	0	0.16524	1	12802	12802		65.803	4.8312	1	524520	+		2103	13527	1278	1285	2120	2120					0.010885795465242154
ALHVLLVNE	9	Unmodified	_ALHVLLVNE_					0	0	0			REV__ENSG00000155858|ENST00000286307|LSM11	REV__ENSG00000155858|ENST00000286307|LSM11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53472900390625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.803	1	27.803	27.303	28.303	0								0	0	0	0.31623	1	8901	8901		39.253	2.8061	1		+		2104	15614	1279	1286	2121	2121					0.07810333339944009
ALHVLSSRL	9	Unmodified	_ALHVLSSRL_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.8722229003906	3	332.538064	994.592364	0.26266	8.7345E-05	-0.21515	-7.1545E-05	0.047515	1.58E-05	332.53797586033505	20.555	0.21029	20.555	20.425	20.636	0					12	6	2	0	0	0	0.53083	1	5485	5485		29.15	2.4566	1	310890			2105	4622	1280	1287	2122	2122					0.09485155434083481
ALHVPRGL	8	Unmodified	_ALHVPRGL_					0	0	0		nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.7665100097656	2	431.766512	861.518471	-0.48319	-0.00020862	-0.01798	-7.7632E-06	-0.50117	-0.00021639	431.76652956658296	24.865	0.36115	24.865	24.712	25.073	0					15	7	3	0	0	0	0.67475	1	8740	8740		37.028	8.7742	1	709560			2106	11693	1281	1288	2123	2123					0.08217232062418134
ALHYQLAQI	9	Unmodified	_ALHYQLAQI_					0	0	0		ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant;ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant;ITGAE|p.I909Lfs*19|1|0.09|ENSG00000083457|chr17:3732398-3732398|C/-|frameshift_variant;ENSG00000083457|ENST00000263087|ITGAE	ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant	ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7932739257812	2	528.795466	1055.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.852	1	33.852	33.352	34.352	0								0	0	0	0.10826	1	12557	12557		44.117	0	1				2107	1695	1282	1289	2124	2124					0.050814491971550524
ALIEPGTPTG	10	Unmodified	_ALIEPGTPTG_					0	0	0			REV__nc|nan|Q8NDD1-7|C1orf131	REV__nc|nan|Q8NDD1-7|C1orf131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2587585449219	2	478.258382	954.502212	0.42509	0.0002033	0.26016	0.00012442	0.68525	0.00032773	478.2584981541073	42.18	0.087963	42.18	42.122	42.21	0					6	4	2	0	0	0	0.60076	1	15988	15988		34.173	3.8548	1	38999	+		2108	15202	1283	1290	2125	2125					0.02314061314996252
ALIISPNNAL	10	Unmodified	_ALIISPNNAL_					0	0	0			REV__tr|U7SJV0|U7SJV0_FUSNULipoprotein-releasingsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02096PE=3SV=1	REV__tr|U7SJV0|U7SJV0_FUSNULipoprotein-releasingsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02096PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.3036499023438	2	513.303124	1024.5917	1.2967	0.00066562	-1.1094	-0.00056945	0.18736	9.6175E-05	513.3023448815358	42.809	0.15625	42.809	42.718	42.875	0					9	7	2	0	0	0	0.54197	1	16802	16802		40.778	5.6261	1	69812	+		2109	21746	1284	1291	2126	2126					0.0803831599437217
ALIKERKIS	9	Unmodified	_ALIKERKIS_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.2291564941406	3	353.229119	1056.66553	0.70756	0.00024993	-0.55047	-0.00019444	0.15709	5.549E-05	353.22890612081227	20.07	0.15405	20.07	19.971	20.125	0					6	3	2	0	0	0	0.50858	1	6176	6176		31.53	0	1	1010100	+		2110	16359	1285	1292	2127	2127					0.13946284156691036
ALIKERKIS	9	Unmodified	_ALIKERKIS_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.2290954589844	3	353.229119	1056.66553	-0.050922	-1.7987E-05	0.016559	5.8492E-06	-0.034362	-1.2138E-05	353.2291230690473	19.952	0.11774	19.952	19.893	20.011	0					4	2	2	0	0	0	0.42902	1	6269	6269		39.253	0	1	934310	+		2111	16359	1285	1292	2128	2128					0.13946284156691036
ALILLDSQL	9	Unmodified	_ALILLDSQL_					0	0	0		OR6C70|p.Y102Tfs*12|1|0.32|ENSG00000184954|chr12:55469835-55469835|A/-|frameshift_variant;OR6C70|p.Y102Lfs*18|1|0.52|ENSG00000184954|chr12:55469834-55469835|-/A|frameshift_variant;ENSG00000184954|ENST00000327335|OR6C70	OR6C70|p.Y102Tfs*12|1|0.32|ENSG00000184954|chr12:55469835-55469835|A/-|frameshift_variant	OR6C70|p.Y102Tfs*12|1|0.32|ENSG00000184954|chr12:55469835-55469835|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.3004150390625	2	493.30005	984.585547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.665	1	36.665	36.165	37.165	0								0	0	0	0.34598	1	12021	12021		19.104	0	1				2112	7046	1286	1293	2129	2129					0.09263797762855575
ALIRPIEFG	9	Unmodified	_ALIRPIEFG_					0	0	0			REV__ENST00000557684.5_1_12:25267803-25348012:-|nuORF	REV__ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.20263671875	3	339.202682	1014.58622	0.53032	0.00017989	-1.0849	-0.000368	-0.55457	-0.00018811	339.2024480679851	29.892	0.30843	29.892	29.784	30.092	0					10	6	2	0	0	0	0.47038	1	11126	11126		35.618	6.4687	1	291500	+		2113	14216	1287	1294	2130	2130					0.07950637202566213
ALISVKLEQ	9	Unmodified	_ALISVKLEQ_					0	0	0			REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.20635986328125	3	334.206092	999.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.507	1	25.507	25.007	26.007	0								0	0	0	0.23459	1	7941	7941		52.937	6.9645	1		+		2114	16488	1288	1295	2131	2131					0.09663200137129024
ALKALYVGNR	10	Unmodified	_ALKALYVGNR_					0	0	0			REV__IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant	REV__IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.8890380859375	3	368.888986	1103.64513	-0.11199	-4.1313E-05	-0.12693	-4.6824E-05	-0.23892	-8.8137E-05	368.8891157007778	21.995	0.14644	21.995	21.9	22.046	0					8	3	3	0	0	0	0.60281	1	6488	6488		33.922	1.9668	1	106810	+		2115	15281	1289	1296	2132	2132					0.09745113496887825
ALKASLTLGI	10	Unmodified	_ALKASLTLGI_					0	0	0		ENSG00000158748|ENST00000289753|HTR6;HTR6|p.K262R|1|0.07|ENSG00000158748|chr1:19678637-19678637|A/G|missense_variant	ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8163146972656	2	493.815867	985.617182	0.025563	1.2623E-05	0.0015234	7.5229E-07	0.027086	1.3376E-05	493.81585812727116	27.734	0.91973	27.734	27.454	28.374	0					38	22	2	0	0	0	0.59255	1	9090	9090		30.318	11.214	1	125940			2116	5281	1290	1297	2133	2133					0.12379790516808953
ALKATSAFLR	10	Unmodified	_ALKATSAFLR_					0	0	0		nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1;MEI1|p.K750Rfs*6|1|0.45|ENSG00000167077|chr22:41763301-41763302|AA/-|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1	nc|ENSG00000167077|Q5TIA1-6|MEI1	nc|ENSG00000167077|Q5TIA1-6|MEI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.21954345703125	3	359.885353	1076.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.044	1	25.044	24.544	25.544	0								0	0	0	0.41137	1	8840	8840		27.047	0.3544	1				2117	5964	1291	1298	2134	2134					0.09897711122584951
ALKDPRTE	8	Unmodified	_ALKDPRTE_					0	0	0			REV__nc|ENSG00000186994|Q6NY19-1|KANK3	REV__nc|ENSG00000186994|Q6NY19-1|KANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2557678222656	2	465.256174	928.497795	0.69379	0.00032279	-1.2676	-0.00058974	-0.57376	-0.00026695	465.25566628924025	16.98	0.16421	16.98	16.875	17.039	0					6	3	2	0	0	0	0.5676	1	4827	4827		53.351	5.4358	1	695820	+		2118	17103	1292	1299	2135	2135					0.030685968920806772
ALKEQTRP	8	Unmodified	_ALKEQTRP_					0	0	0			REV__ENST00000528947.5_2_11:7535100-7569685:+|nuORF	REV__ENST00000528947.5_2_11:7535100-7569685:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7713928222656	2	471.771991	941.529429	-0.56594	-0.00026699	-0.30991	-0.0001462	-0.87584	-0.0004132	471.77174106599716	21.206	0.15348	21.206	21.108	21.261	0					5	3	2	0	0	0	0.76283	1	6116	6116		25.45	2.4077	1	115060	+		2119	20024	1293	1300	2136	2136					0.05632589646040742
ALKGWLSSL	9	Unmodified	_ALKGWLSSL_					0	0	0			REV__ENSG00000104408|ENST00000220849|EIF3E	REV__ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.78765869140625	2	487.78711	973.559667	2.5717	0.0012545	-1.6401	-0.0008	0.93169	0.00045446	487.78651611801115	42.808	0.52174	42.808	42.501	43.023	0					41	15	4	0	0	0	0.26904	1	17094	17094		53.351	0.41475	1	1689200	+		2120	13725	1294	1301	2137	2137					0.07182948311253767
ALKLGLAAAE	10	Unmodified	_ALKLGLAAAE_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7925109863281	2	478.792392	955.570232	-0.31975	-0.00015309	-0.48776	-0.00023353	-0.80751	-0.00038663	478.79220768464126	34.752	0.31741	34.752	34.609	34.926	0					18	11	2	0	0	0	0.30737	1	12345	12345		66.429	9.7082	1	89795	+		2121	16379	1295	1302	2138	2138					0.0906693096563913
ALKLKAESP	9	Unmodified	_ALKLKAESP_					0	0	0			REV__PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	REV__PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7926025390625	2	478.792392	955.570232	0.020754	9.9369E-06	-0.11904	-5.6994E-05	-0.098282	-4.7057E-05	478.79209889587077	34.735	0.25656	34.735	34.586	34.843	0					15	11	2	0	0	0	0.24095	1	11371	11371		56.721	5.3856	1	68813	+		2122	13065	1296	1303	2139	2139					0.09066930965650499
ALLCNVEEA	9	Unmodified	_ALLCNVEEA_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2357177734375	2	481.236593	960.458632	0.68386	0.0003291	-1.5211	-0.00073202	-0.83726	-0.00040292	481.2360323340381	42.456	0.16414	42.456	42.343	42.507	0					13	8	2	0	0	0	0.22377	1	16647	16647		58.782	7.4465	1	56389	+		2123	15972	1297	1304	2140	2140					-0.02317871453783482
ALLDEVRGRRA	11	Unmodified	_ALLDEVRGRRA_					0	0	0		ENST00000478389.5_1_20:57566845-57568278:+|nuORF	ENST00000478389.5_1_20:57566845-57568278:+|nuORF	ENST00000478389.5_1_20:57566845-57568278:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	418.91192626953125	3	419.245832	1254.71567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.554	1	36.554	36.054	37.054	0								0	0	0	0.42918	1	11991	11991		30.569	9.7317	1				2124	9934	1298	1305	2141	2141					0.09849786814561412
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.8270263671875	2	581.826963	1161.63937	1.4438	0.00084007	-0.52344	-0.00030455	0.92041	0.00053552	581.8264779475928	43.107	0.17485	43.107	43.041	43.216	0					19	8	3	0	0	0	0.089609	1	16891	16891		92.239	42.703	1	231630			2125	7683	1299	1306	2142	2142					0.06501970194563
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.8268432617188	2	581.826963	1161.63937	1.6856	0.00098074	-1.3005	-0.00075664	0.38517	0.0002241	581.8260788068793	43.026	0.20609	43.026	42.983	43.189	0					10	5	3	0	0	0	0.17294	1	17213	17213		77.533	35.137	1	246240			2126	7683	1299	1306	2143	2143					0.06501970194563
ALLDITVTK	9	Unmodified	_ALLDITVTK_					0	0	0		nc|ENSG00000136141|Q9Y2L9-2|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.299560546875	2	487.30005	972.585547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.712	1	40.712	40.212	41.212	0								0	0	0	0.10826	1	15521	15521		69.628	5.4204	1				2127	11539	1300	1307	2144	2144					0.09815797762860257
ALLDITVTK	9	Unmodified	_ALLDITVTK_					0	0	0		nc|ENSG00000136141|Q9Y2L9-2|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.29962158203125	2	487.30005	972.585547	0.81215	0.00039576	-0.84272	-0.00041066	-0.030574	-1.4899E-05	487.2995509921528	40.677	0.18451	40.677	40.578	40.762	0					7	4	2	0	0	0	0.35021	1	16176	16176		45.972	3.5761	1	62328			2128	11539	1300	1307	2145	2145					0.09815797762860257
ALLFTSKK	8	Unmodified	_ALLFTSKK_					0	0	0		ENST00000539921.5_1_11:62619473-62619665:-|nuORF	ENST00000539921.5_1_11:62619473-62619665:-|nuORF	ENST00000539921.5_1_11:62619473-62619665:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.283935546875	2	454.284203	906.553853	-0.47716	-0.00021677	0.15202	6.9059E-05	-0.32514	-0.00014771	454.2842206913817	26.3	1.3859	26.3	25.476	26.862	0					70	26	4	0	0	0	0.61938	1	9159	9159		45.952	3.5558	1	1025900			2129	10527	1301	1308	2146	2146					0.0968384979955772
ALLGGLLIK	9	Unmodified	_ALLGGLLIK_					0	0	0			REV__ENST00000455785.6_1_1:26226635-26226746:-|nuORF	REV__ENST00000455785.6_1_1:26226635-26226746:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.3100280761719	2	449.310221	896.605889	0.87548	0.00039336	-1.2483	-0.00056088	-0.37283	-0.00016752	449.30959530361974	43.085	0.28756	43.085	42.983	43.27	0					16	8	3	0	0	0	0.037966	1	17235	17235		101.21	3.7389	1	392100	+		2130	19344	1302	1309	2147	2147					0.1534501321333437
ALLGKVELQQ	10	Unmodified	_ALLGKVELQQ_					0	0	0		ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.8887023925781	3	366.888763	1097.64446	-0.17067	-6.2618E-05	0.20902	7.6688E-05	0.038351	1.407E-05	366.8888153147665	21.246	0.5124	21.246	20.891	21.404	0					24	10	3	0	0	0	0.64178	1	6874	6874		33.922	0	1	501730			2131	2776	1303	1310	2148	2148					0.0995427405719056
ALLGPHLERV	10	Unmodified	_ALLGPHLERV_					0	0	0			REV__nc|ENSG00000131584|Q96P50-4|ACAP3	REV__nc|ENSG00000131584|Q96P50-4|ACAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.8888244628906	3	368.888986	1103.64513	0.48294	0.00017815	-0.43389	-0.00016006	0.049042	1.8091E-05	368.888799521341	21.882	0.084581	21.882	21.841	21.926	0					4	2	2	0	0	0	0.6796	1	6109	6109		24.519	0	1	46326	+		2132	14627	1304	1311	2149	2149					0.09745113496887825
ALLGVIIAK	9	Unmodified	_ALLGVIIAK_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.309814453125	2	449.310221	896.605889	-0.46493	-0.0002089	-0.025572	-1.149E-05	-0.4905	-0.00022039	449.3101659335758	43.132	0.36349	43.132	43.041	43.405	0					38	20	3	0	0	0	0.043797	1	16287	16287		97.473	39.661	1	688360			2133	2789	1305	1312	2150	2150					0.15345013213323
ALLGVIIAK	9	Unmodified	_ALLGVIIAK_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.3103942871094	2	449.310221	896.605889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.885	1	42.885	42.385	43.385	0								0	0	0	0.14807	1	14089	14089		60.294	10.269	1				2134	2789	1305	1312	2151	2151					0.15345013213323
ALLGVIIAK	9	Unmodified	_ALLGVIIAK_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.310791015625	2	449.310221	896.605889	0.65866	0.00029594	-0.97644	-0.00043872	-0.31778	-0.00014278	449.3097779881024	43.107	0.27938	43.107	43.023	43.303	0					30	14	3	0	0	0	0.068692	1	16877	16877		88.643	10.699	1	697510			2135	2789	1305	1312	2152	2152					0.15345013213323
ALLHGGAL	8	Unmodified	_ALLHGGAL_					0	0	0			REV__tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	REV__tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	376.2266540527344	2	376.226688	750.438824	-1.0822	-0.00040717	1.2256	0.00046109	0.14332	5.3922E-05	376.22708036275566	28.208	0.17516	28.208	28.15	28.325	0					8	6	2	0	0	0	0.63381	1	9076	9076		43.626	10.133	1	137800	+		2136	22200	1306	1313	2153	2153					0.0536216538843064
ALLHGGAL	8	Unmodified	_ALLHGGAL_					0	0	0			REV__tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	REV__tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.22662353515625	2	376.226688	750.438824	-2.1239	-0.00079907	2.4935	0.00093811	0.36955	0.00013904	376.2276650693918	28.279	0.18652	28.279	28.176	28.363	0					7	4	2	0	0	0	0.63381	1	9374	9374		43.626	0	1	84740	+		2137	22200	1306	1313	2154	2154					0.0536216538843064
ALLKDSIK	8	Unmodified	_ALLKDSIK_					0	0	0		TMTC1|p.T569A|1|0.2|ENSG00000133687|chr12:29536289-29536289|T/C|missense_variant	TMTC1|p.T569A|1|0.2|ENSG00000133687|chr12:29536289-29536289|T/C|missense_variant	TMTC1|p.T569A|1|0.2|ENSG00000133687|chr12:29536289-29536289|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2814636230469	2	444.28166	886.548768	0.54019	0.00023999	-0.84875	-0.00037708	-0.30856	-0.00013709	444.28127370742845	35.751	0.18244	35.751	35.676	35.858	0					9	5	2	0	0	0	0.72381	1	13891	13891		30.504	2.6214	1	196660			2138	22549	1307	1314	2155	2155					0.10095545936951567
ALLLADGVRA	10	Unmodified	_ALLLADGVRA_					0	0	0			REV__ENSG00000069018|ENST00000513104|TRPC7	REV__ENSG00000069018|ENST00000513104|TRPC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.802490234375	2	499.803291	997.59203	-1.0378	-0.0005187	1.1863	0.00059293	0.14852	7.423E-05	499.80350848117644	37.209	0.10345	37.209	37.147	37.251	0					7	5	2	0	0	0	0.67098	1	12591	12591		25.574	3.6142	1	41843	+		2139	13158	1308	1315	2156	2156					0.09313735714226823
ALLLLLPHS	9	Unmodified	_ALLLLLPHS_					0	0	0			REV__ENST00000483923.5_1_10:100170623-100171145:-|nuORF	REV__ENST00000483923.5_1_10:100170623-100171145:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.8127136230469	2	488.813128	975.611703	-0.41055	-0.00020068	-0.02347	-1.1472E-05	-0.43402	-0.00021215	488.81310365070624	36.622	2.4322	36.622	34.6	37.032	0					136	65	3	0	0	0	0.21116	1	13645	13645		60.294	2.4827	1	1572700	+		2140	19628	1309	1316	2157	2157					0.12292111724991628
ALLLLTLAY	9	Unmodified	_ALLLLTLAY_					0	0	0		ENSG00000148795|ENST00000369887|CYP17A1	ENSG00000148795|ENST00000369887|CYP17A1	ENSG00000148795|ENST00000369887|CYP17A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.81585693359375	2	495.815336	989.616119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.889	1	35.889	35.389	36.389	0								0	0	0	0.36766	1	13941	13941		20.482	1.1219	1				2141	4851	1310	1317	2158	2158					0.12089576147877779
ALLLPPSRH	9	Unmodified	_ALLLPPSRH_					0	0	0		ENST00000339560.9_1_19:14048664-14049262:-|nuORF;ENST00000538517.6_1_19:14048664-14064120:-|nuORF	ENST00000339560.9_1_19:14048664-14049262:-|nuORF	ENST00000339560.9_1_19:14048664-14049262:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.30450439453125	2	502.306001	1002.59745	0.13831	6.9472E-05	-3.3021	-0.0016587	-3.1638	-0.0015892	502.3043378270323	31.995	0.1621	31.995	31.886	32.048	0					6	4	2	0	0	0	0.36892	1	11073	11073		45.952	7.1458	1	114000			2142	8721	1311	1318	2159	2159					0.09625459296705685
ALLLPQPKP	9	Unmodified	_ALLLPQPKP_					0	0	0			REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.8128356933594	2	488.813128	975.611703	-1.2501	-0.00061108	1.1887	0.00058108	-0.061377	-3.0002E-05	488.813649768369	36.308	0.57426	36.308	36.023	36.597	0					45	28	2	0	0	0	0.32741	1	12255	12255		47.916	0	1	81533	+		2143	19046	1312	1319	2160	2160					0.12292111724991628
ALLLPQPKP	9	Unmodified	_ALLLPQPKP_					0	0	0			REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.813232421875	2	488.813128	975.611703	0.61338	0.00029983	-0.89176	-0.0004359	-0.27838	-0.00013608	488.81266242597286	36.536	1.407	36.536	35.532	36.939	0					86	41	3	0	0	0	0.26904	1	14052	14052		53.351	2.016	1	581750	+		2144	19046	1312	1319	2161	2161					0.12292111724991628
ALLPALLQQ	9	Unmodified	_ALLPALLQQ_					0	0	0		nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A	nc|ENSG00000179262|P54725-2|RAD23A	nc|ENSG00000179262|P54725-2|RAD23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.8025207519531	2	483.80276	965.590967	-0.17634	-8.5312E-05	-0.30091	-0.00014558	-0.47725	-0.00023089	483.802630270269	47.326	0.26241	47.326	47.229	47.491	0					43	16	3	0	0	0	0.23186	1	17368	17368		57.811	2.3071	1	700800			2145	6761	1313	1320	2162	2162					0.10679521345332432
ALLQEQGL	8	Unmodified	_ALLQEQGL_					0	0	0		ENST00000557787.1_1_15:89164581-89170043:+|nuORF;ENSG00000181026|ENST00000332810|AEN;nc|ENSG00000181026|Q8WTP8-2|AEN	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2474670410156	2	436.247818	870.481082	-0.41362	-0.00018044	-0.23473	-0.0001024	-0.64835	-0.00028284	436.24770399439694	23.795	0.61958	23.795	23.554	24.174	0					25	14	2	0	0	0	0.44433	1	7932	7932		65.803	4.8312	1	379800			2146	6832	1314	1321	2163	2163					0.04066096006135922
ALLQNITL	8	Unmodified	_ALLQNITL_					0	0	0			REV__CON__Q9TRI1	REV__CON__Q9TRI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2724914550781	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.264	1	36.264	35.764	36.764	0								0	0	0	1.7419	1	12976	12976		30.504	0	1		+	+	2147	12621	1315	1322	2164	2164					0.08623259419891838
ALLRQVWL	8	Unmodified	_ALLRQVWL_					0	0	0			REV__GRPEL2|p.R12W|1|0.12|ENSG00000164284|chr5:149345573-149345573|C/T|missense_variant	REV__GRPEL2|p.R12W|1|0.12|ENSG00000164284|chr5:149345573-149345573|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	333.5417175292969	3	333.543038	997.607286	-0.66746	-0.00022263	-3.5886	-0.001197	-4.2561	-0.0014196	333.54195794185404	25.376	0.095289	25.376	25.312	25.407	0					6	3	2	0	0	0	0.57802	1	7883	7883		52.299	2.2746	1	73621	+		2148	20708	1316	1323	2165	2165					0.10838647302068694
ALLRQVWL	8	Unmodified	_ALLRQVWL_					0	0	0			REV__GRPEL2|p.R12W|1|0.12|ENSG00000164284|chr5:149345573-149345573|C/T|missense_variant	REV__GRPEL2|p.R12W|1|0.12|ENSG00000164284|chr5:149345573-149345573|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.54150390625	3	333.543038	997.607286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.465	1	25.465	24.965	25.965	0								0	0	0	1.7419	1	8101	8101		35.201	1.6851	1		+		2149	20708	1316	1323	2166	2166					0.10838647302068694
ALLTEQDVN	9	Unmodified	_ALLTEQDVN_					0	0	0		ENSG00000162624|ENST00000356261|LHX8;nc|ENSG00000162624|Q68G74|LHX8	ENSG00000162624|ENST00000356261|LHX8	ENSG00000162624|ENST00000356261|LHX8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.75872802734375	2	501.758746	1001.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.19	1	32.19	31.69	32.69	0								0	0	0	0.23445	1	10394	10394		45.972	5.3996	1				2150	5479	1317	1324	2167	2167					0.002248559640520398
ALLVDRYK	8	Unmodified	_ALLVDRYK_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.29248046875	2	489.292559	976.570566	-0.43334	-0.00021203	-0.063209	-3.0928E-05	-0.49655	-0.00024296	489.2925091208782	25.582	0.59951	25.582	25.275	25.874	0					30	12	4	0	0	0	0.67394	1	8768	8768		37.159	4.3467	1	894510			2151	6589	1318	1325	2168	2168					0.08134350685509162
ALLVGTCTEM	10	Unmodified	_ALLVGTCTEM_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1;PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2545776367188	2	519.253928	1036.4933	1.4254	0.00074012	-2.8941	-0.0015028	-1.4687	-0.00076264	519.2524923188776	38.693	0.11689	38.693	38.632	38.749	0					8	6	2	0	0	0	0.26673	1	12610	12610		71.296	12.514	1	47130			2152	11644	1319	1326	2169	2169					-0.02348371637344826
ALLYINAMIV	10	Unmodified	_ALLYINAMIV_					0	0	0			REV__ENSG00000167360|ENST00000300778|OR51Q1	REV__ENSG00000167360|ENST00000300778|OR51Q1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.2177429199219	3	374.219344	1119.6362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.068	1	24.068	23.568	24.568	0								0	0	0	0.41967	1	7447	7447		24.519	3.682	1		+		2153	16186	1320	1327	2170	2170					0.08117003816187207
ALMALHVPM	9	Unmodified	_ALMALHVPM_					0	0	0			REV__ENST00000496342.1_1_22:29656732-29660364:-|nuORF	REV__ENST00000496342.1_1_22:29656732-29660364:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7649841308594	2	491.764266	981.513979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.284	1	33.284	32.784	33.784	0								0	0	0	0.3269	1	10811	10811		29.842	0.69198	1		+		2154	13528	1321	1328	2171	2171					0.022482635329993172
ALMEKFKKK	9	Unmodified	_ALMEKFKKK_					0	0	0		nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.8390502929688	2	561.83882	1121.66309	0.47117	0.00026472	-1.2033	-0.00067607	-0.73214	-0.00041135	561.8383160790361	18.637	0.34151	18.637	18.461	18.803	0					13	8	2	0	0	0	0.18416	1	5519	5519		56.721	9.0637	1	360870			2155	4689	1322	1329	2172	2172					0.10712112427381726
ALMEKFKKK	9	Unmodified	_ALMEKFKKK_					0	0	0		nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.8948059082031	3	374.894972	1121.66309	0.75844	0.00028434	-1.7289	-0.00064817	-0.97049	-0.00036383	374.8944363549702	18.603	0.41745	18.603	18.344	18.761	0					16	8	3	0	0	0	0.44593	1	5750	5750		37.812	3.8899	1	1113700			2156	4689	1322	1329	2173	2173					0.10712112427381726
ALMGYATHK	9	Unmodified	_ALMGYATHK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.25494384765625	2	496.25512	990.495686	-0.060638	-3.0092E-05	-0.14918	-7.4029E-05	-0.20981	-0.00010412	496.2549979102279	23	0.23957	23	22.907	23.146	0					18	8	4	0	0	0	0.1424	1	6596	6596		69.628	27.231	1	326610			2157	3484	1323	1330	2174	2174					5.844882628025516E-05
ALMGYATHK	9	Unmodified	_ALMGYATHK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2550048828125	2	496.25512	990.495686	-0.36035	-0.00017882	-0.053448	-2.6524E-05	-0.4138	-0.00020535	496.2552478463237	23.349	0.31458	23.349	23.25	23.565	0					14	7	2	0	0	0	0.037569	1	7724	7724		101.6	35.798	1	1522400			2158	3484	1323	1330	2175	2175					5.844882628025516E-05
ALMGYATHK	9	Unmodified	_ALMGYATHK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.25543212890625	2	496.25512	990.495686	-1.4435	-0.00071635	1.7246	0.00085584	0.28109	0.00013949	496.2561147118304	23.063	0.19157	23.063	22.987	23.179	0					14	6	3	0	0	0	0.0792	1	6868	6868		84.916	40.799	1	224860			2159	3484	1323	1330	2176	2176					5.844882628025516E-05
ALMGYATHK	9	Unmodified	_ALMGYATHK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.17254638671875	3	331.172505	990.495686	1.5018	0.00049736	-1.7183	-0.00056907	-0.21653	-7.1708E-05	331.172002976465	23.255	0.31672	23.255	23.145	23.462	0					11	6	2	0	0	0	0.39215	1	7999	7999		67.494	36.99	1	829260			2160	3484	1323	1330	2177	2177					5.844882628025516E-05
ALMGYATHK	9	Unmodified	_ALMGYATHK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2548828125	2	496.25512	990.495686	-0.76418	-0.00037923	0.33813	0.0001678	-0.42605	-0.00021143	496.25555147647157	23.238	0.56634	23.238	23.128	23.695	0					22	11	4	0	0	0	0.0051608	1	7991	7991		157.33	80.482	1	867030			2161	3484	1323	1330	2178	2178					5.844882628025516E-05
ALMIWKGLI	9	Unmodified	_ALMIWKGLI_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000585864.1_1_18:56807180-56819918:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8186645507812	2	522.817356	1043.62016	1.7965	0.00093923	0.65309	0.00034145	2.4496	0.0012807	522.8177780016673	29.161	0.55825	29.161	29.007	29.565	0					40	12	5	0	0	0	0.16002	1	10749	10749		50.025	50.025	1	5207600			2162	5915	1324	1331	2179	2179					0.10009342369971819
ALMLARICD	9	Unmodified	_ALMLARICD_					0	0	0			REV__ENSG00000164236|ENST00000296657|ANKRD33B	REV__ENSG00000164236|ENST00000296657|ANKRD33B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2663879394531	2	503.26463	1004.51471	2.9288	0.001474	0.01906	9.592E-06	2.9479	0.0014836	503.26465155253544	46.546	0.43375	46.546	46.321	46.755	0					47	19	3	0	0	0	0.32741	1	18588	18588		47.916	3.7988	1	234610	+		2163	15974	1325	1332	2180	2180					0.012630581820303632
ALMLFGKDF	9	Unmodified	_ALMLFGKDF_					0	0	0		MIER3|p.R343Dfs*15|4|0.22|ENSG00000155545|chr5:56923940-56923940|T/-|frameshift_variant;ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	MIER3|p.R343Dfs*15|4|0.22|ENSG00000155545|chr5:56923940-56923940|T/-|frameshift_variant	MIER3|p.R343Dfs*15|4|0.22|ENSG00000155545|chr5:56923940-56923940|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.27587890625	2	521.275521	1040.53649	1.6254	0.00084729	-0.21971	-0.00011453	1.4057	0.00073276	521.2745228216372	36.308	0.76464	36.308	36.064	36.829	0					48	15	5	0	0	0	0.27249	1	14114	14114		45.952	0	1	1541800			2164	5130	1326	1333	2181	2181					0.017841862022578425
ALMMRHRAL	9	Unmodified	_ALMMRHRAL_					0	0	0		LDOC1|p.L13M|1|0.24|ENSG00000182195|chrX:141176985-141176985|G/T|missense_variant	LDOC1|p.L13M|1|0.24|ENSG00000182195|chrX:141176985-141176985|G/T|missense_variant	LDOC1|p.L13M|1|0.24|ENSG00000182195|chrX:141176985-141176985|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.80517578125	2	549.804788	1097.59502	0.34632	0.00019041	-0.02458	-1.3514E-05	0.32174	0.00017689	549.8047593025701	24.652	0.17838	24.652	24.585	24.763	0					9	6	2	0	0	0	0.41113	1	7577	7577		25.45	0	1	183340			2165	11313	1327	1334	2182	2182					0.05012964295747224
ALNAGSYASL	10	Unmodified	_ALNAGSYASL_					0	0	0		CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2;nc|ENSG00000163539|O75122|CLASP2	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7478942871094	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.147	1	41.147	40.647	41.647	0								0	0	0	0.40063	1	13216	13216		30.318	7.2752	1				2166	548	1328	1335	2183	2183					-0.002311093448156498
ALNAGSYASL	10	Unmodified	_ALNAGSYASL_					0	0	0		CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2;nc|ENSG00000163539|O75122|CLASP2	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7475280761719	2	483.748182	965.481811	0.60532	0.00029282	-1.5279	-0.00073912	-0.92259	-0.0004463	483.74753112290773	41.473	0.1758	41.473	41.41	41.586	0					13	8	2	0	0	0	0.01215	1	15761	15761		134.77	60.511	1	124320			2167	548	1328	1335	2184	2184					-0.002311093448156498
ALNAGSYASL	10	Unmodified	_ALNAGSYASL_					0	0	0		CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2;nc|ENSG00000163539|O75122|CLASP2	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2490234375	2	483.748182	965.481811	0.67387	0.00032598	-1.3399	-0.00064818	-0.66604	-0.0003222	483.747599636923	41.45	0.23237	41.45	41.363	41.595	0					15	9	2	0	0	0	0.36647	1	16288	16288		59.931	22.119	1	189310			2168	548	1328	1335	2185	2185					-0.002311093448156498
ALNAGSYASL	10	Unmodified	_ALNAGSYASL_					0	0	0		CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2;nc|ENSG00000163539|O75122|CLASP2	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.74786376953125	2	483.748182	965.481811	-0.59245	-0.0002866	-0.039622	-1.9167E-05	-0.63207	-0.00030576	483.74813719078156	41.395	0.13913	41.395	41.326	41.465	0					5	3	2	0	0	0	0.16745	1	16466	16466		83.647	40.783	1	44622			2169	548	1328	1335	2186	2186					-0.002311093448156498
ALNAGSYASL	10	Unmodified	_ALNAGSYASL_					0	0	0		CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2;nc|ENSG00000163539|O75122|CLASP2	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7478942871094	2	483.748182	965.481811	2.4365	0.0011787	-3.614	-0.0017483	-1.1775	-0.0005696	483.7467572919414	41.412	0.30093	41.412	41.256	41.557	0					16	7	3	0	0	0	0.041742	1	16474	16474		112.11	47.9	1	167120			2170	548	1328	1335	2187	2187					-0.002311093448156498
ALNGAIMK	8	Unmodified	_ALNGAIMK_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.23199462890625	2	409.233656	816.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.223	1	22.223	21.723	22.723	0								0	0	0	1.7419	1	6583	6583		25.45	4.9683	1				2171	5659	1329	1336	2188	2188					0.037190748251987316
ALNGRRLGKG	10	Unmodified	_ALNGRRLGKG_					0	0	0		ENST00000473834.1_1_3:38065750-38065924:-|nuORF	ENST00000473834.1_1_3:38065750-38065924:-|nuORF	ENST00000473834.1_1_3:38065750-38065924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.8167114257812	2	521.317432	1040.62031	1.6248	0.00084703	-3.0552	-0.0015927	-1.4304	-0.0007457	521.8167629156399	38.902	0.49694	38.902	38.627	39.124	0					20	10	3	0	0	0	0.52707	1	15335	15335		42.396	8.8806	1	102710			2172	9882	1330	1337	2189	2189					0.10162478414167708
ALNGSLQKGY	10	Unmodified	_ALNGSLQKGY_					0	0	0			REV__tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1	REV__tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7817993164062	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.318	1	49.318	48.818	49.818	0								0	0	0	0.41253	1	19510	19510		26.693	1.1189	1		+		2173	22050	1331	1338	2190	2190					0.027765549549030766
ALNQVICVPF	10	Unmodified	_ALNQVICVPF_					0	0	0			REV__ENST00000483205.1_1_3:47551524-47551638:-|nuORF	REV__ENST00000483205.1_1_3:47551524-47551638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.2980346679688	2	552.299527	1102.5845	-1.2745	-0.00070388	-0.71941	-0.00039733	-1.9939	-0.0011012	552.2989558843278	38.328	0.1715	38.328	38.251	38.422	0					18	8	3	0	0	0	0.40673	1	13703	13703		55.504	4.1688	1	104990	+		2174	19621	1332	1339	2191	2191					0.03731260122299318
ALNTLFFY	8	Unmodified	_ALNTLFFY_					0	0	0			REV__ENSG00000255223|ENST00000528616|OR5M11	REV__ENSG00000255223|ENST00000528616|OR5M11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2639465332031	2	494.760561	987.506569	-0.42526	-0.0002104	-2.3959	-0.0011854	-2.8212	-0.0013958	494.7586052835775	33.535	0.40909	33.535	33.288	33.698	0					35	10	5	0	0	0	0.68754	1	12344	12344		35.201	0	1	1404500	+		2175	17752	1333	1340	2192	2192					0.012315705285686818
ALNVLLGIAG	10	Unmodified	_ALNVLLGIAG_					0	0	0			REV__RXFP4|p.G56V|1|0.24|ENSG00000173080|chr1:155941876-155941876|G/T|missense_variant	REV__RXFP4|p.G56V|1|0.24|ENSG00000173080|chr1:155941876-155941876|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.79547119140625	2	470.794935	939.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.536	1	35.536	35.036	36.036	0								0	0	0	0.37816	1	13778	13778		37.159	1.5408	1		+		2176	21481	1334	1341	2193	2193					0.10311234828293436
ALNVVFSGK	9	Unmodified	_ALNVVFSGK_					0	0	0			REV__PCDHB9|p.E40D|1|0.19|ENSG00000177839|chr5:141187438-141187438|G/T|missense_variant	REV__PCDHB9|p.E40D|1|0.19|ENSG00000177839|chr5:141187438-141187438|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7709045410156	2	467.77146	933.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.674	1	37.674	37.174	38.174	0								0	0	0	0.29774	1	13479	13479		35.618	2.8059	1		+		2177	14277	1335	1342	2194	2194					0.05894375277148356
ALPAAQFPA	9	Unmodified	_ALPAAQFPA_					0	0	0		ENST00000527730.1_3_8:145743395-145745348:+|nuORF;ENST00000531310.1_1_8:145744973-145745348:+|nuORF;ENST00000529022.5_1_8:145743395-145745348:+|nuORF	ENST00000527730.1_3_8:145743395-145745348:+|nuORF	ENST00000527730.1_3_8:145743395-145745348:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.24688720703125	2	443.245078	884.475603	-0.25147	-0.00011146	3.7459	0.0016604	3.4944	0.0015489	443.24667517497073	30.247	0.10194	30.247	30.192	30.294	0					4	2	2	0	0	0	0.49003	1	11295	11295		33.516	0.70317	1	49315			2178	10396	1336	1343	2195	2195					0.028744172143206015
ALPEDHGTY	9	Unmodified	_ALPEDHGTY_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.P1126Qfs*8|1|0.11|ENSG00000065534|chr3:123700091-123700091|G/-|frameshift_variant;MYLK|p.R823Gfs*27|1|0.14|ENSG00000065534|chr3:123701002-123701002|C/-|frameshift_variant;ENST00000514623.1_1_3:123428573-123453020:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.73028564453125	2	501.729989	1001.44543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.807	1	28.807	28.307	29.307	0								0	0	0	0.36266	1	9029	9029		21.96	2.5999	1				2179	1374	1337	1344	2196	2196					-0.05523986241530565
ALPPALLTALG	11	Unmodified	_ALPPALLTALG_					0	0	0		ENSG00000112941|ENST00000230859|TENT4A	ENSG00000112941|ENST00000230859|TENT4A	ENSG00000112941|ENST00000230859|TENT4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.8234252929688	2	518.823692	1035.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.074	1	26.074	25.574	26.574	0								0	0	0	0.44646	1	7879	7879		26.693	8.3685	1				2180	2770	1338	1345	2197	2197					0.11644077033815847
ALPPGSYASL	10	Unmodified	_ALPPGSYASL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.26123046875	2	488.260925	974.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.866	1	41.866	41.366	42.366	0								0	0	0	0.19992	1	16677	16677		64.207	11.271	1				2181	1521	1339	1346	2198	2198					0.01902365177613774
ALPPSSPAVE	10	Unmodified	_ALPPSSPAVE_					0	0	0			REV__ENST00000391694.4_1_19:58988585-58991546:+|nuORF	REV__ENST00000391694.4_1_19:58988585-58991546:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2580261230469	2	484.258382	966.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.751	1	27.751	27.251	28.251	0								0	0	0	0.33119	1	10090	10090		45.952	1.5748	1		+		2182	13338	1340	1347	2199	2199					0.017620613150029385
ALPSHLVPA	9	Unmodified	_ALPSHLVPA_					0	0	0		NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant;ENSG00000174145|ENST00000309447|NWD2	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7663269042969	2	452.766178	903.517802	0.72077	0.00032634	0.20506	9.2845E-05	0.92583	0.00041918	452.7655868748689	42.323	0.088181	42.323	42.26	42.348	0					6	4	2	0	0	0	0.14734	1	16620	16620		68.485	22.533	1	29088			2183	6473	1341	1348	2200	2200					0.06218392622713509
ALPSSAIRA	9	Unmodified	_ALPSSAIRA_					0	0	0			REV__nc|ENSG00000102539|O43193-2|MLNR	REV__nc|ENSG00000102539|O43193-2|MLNR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2613220214844	2	443.261259	884.507966	0.24972	0.00011069	-0.7139	-0.00031644	-0.46417	-0.00020575	443.26093917217753	27.355	0.11761	27.355	27.325	27.443	0					8	4	2	0	0	0	0.39215	1	8424	8424		42.396	3.1433	1	79055	+		2184	13638	1342	1349	2201	2201					0.0610920461731439
ALPTGSRAL	9	Unmodified	_ALPTGSRAL_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2609558105469	2	443.261259	884.507966	-0.4969	-0.00022026	-0.22964	-0.00010179	-0.72654	-0.00032205	443.2612099363218	27.569	0.21944	27.569	27.459	27.678	0					10	4	3	0	0	0	0.21263	1	9891	9891		60.118	8.7828	1	433800			2185	964	1343	1350	2202	2202					0.0610920461731439
ALPTGSRAL	9	Unmodified	_ALPTGSRAL_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2610778808594	2	443.261259	884.507966	0.76317	0.00033828	-1.1122	-0.000493	-0.34905	-0.00015472	443.26078409638336	27.571	0.21938	27.571	27.493	27.712	0					10	4	4	0	0	0	0.27249	1	9888	9888		52.937	5.0211	1	646480			2186	964	1343	1350	2203	2203					0.0610920461731439
ALPTTQFHK	9	Unmodified	_ALPTTQFHK_					0	0	0		ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.1941223144531	3	348.194186	1041.56073	0.69347	0.00024146	-0.77854	-0.00027108	-0.085061	-2.9618E-05	348.19390241845264	25.587	0.26056	25.587	25.496	25.756	0					12	6	3	0	0	0	0.51817	1	8773	8773		37.812	0	1	608950			2187	9801	1344	1351	2204	2204					0.04161162680134112
ALPVALAVPPA	11	Unmodified	_ALPVALAVPPA_					0	0	0		ENST00000584346.1_1_18:10724726-10725338:+|nuORF	ENST00000584346.1_1_18:10724726-10725338:+|nuORF	ENST00000584346.1_1_18:10724726-10725338:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.2154235839844	3	340.214699	1017.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.959	1	29.959	29.459	30.459	0								0	0	0	0.44488	1	11150	11150		27.047	6.1004	1				2188	10887	1345	1352	2205	2205					0.11416094379410424
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.7965087890625	2	553.795663	1105.57677	1.3154	0.00072844	-0.61548	-0.00034085	0.69989	0.0003876	553.79522532131	27.986	0.16398	27.986	27.901	28.065	0					10	6	2	0	0	0	0.032052	1	8682	8682		107.01	27.295	1	106130			2189	5349	1346	1353	2206	2206					0.02820824126365551
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7960815429688	2	553.795663	1105.57677	0.61487	0.00034051	0.80467	0.00044562	1.4195	0.00078613	553.7960850826364	28.246	0.37557	28.246	28.032	28.407	0					15	9	3	0	0	0	0.016683	1	9948	9948		127.46	42.546	1	704450			2190	5349	1346	1353	2207	2207					0.02820824126365551
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.7957153320312	2	553.795663	1105.57677	0.18498	0.00010244	0.50811	0.00028139	0.6931	0.00038383	553.7959401327155	27.99	0.14806	27.99	27.931	28.079	0					9	5	2	0	0	0	0.10915	1	8973	8973		77.318	10.356	1	192770			2191	5349	1346	1353	2208	2208					0.02820824126365551
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7958984375	2	553.795663	1105.57677	1.6199	0.00089709	-0.94894	-0.00052552	0.67096	0.00037158	553.7950361693875	28.264	0.25935	28.264	28.173	28.432	0					8	5	2	0	0	0	0.085655	1	10360	10360		82.75	20.643	1	684970			2192	5349	1346	1353	2209	2209					0.02820824126365551
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.7963256835938	2	553.795663	1105.57677	-1.1753	-0.0006509	2.3622	0.0013081	1.1868	0.00065725	553.7971296801079	28.076	0.12257	28.076	27.981	28.103	0					6	3	2	0	0	0	0.0406	1	9255	9255		98.629	35.096	1	180830			2193	5349	1346	1353	2210	2210					0.02820824126365551
ALQFPEKP	8	Unmodified	_ALQFPEKP_					0	0	0		ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.256591796875	2	465.258185	928.501818	-0.81891	-0.000381	-3.2892	-0.0015303	-4.1081	-0.0019113	465.2569069961488	16.774	0.13736	16.774	16.699	16.836	0					8	5	2	0	0	0	0.54629	1	4081	4081		55.504	0.73953	1	117320			2194	5082	1347	1354	2211	2211					0.03470686385810495
ALQHALIYI	9	Unmodified	_ALQHALIYI_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.3082885742188	2	521.30821	1040.60187	1.733	0.00090341	-1.1842	-0.00061736	0.54873	0.00028606	521.3077044083321	40.742	0.56717	40.742	40.391	40.958	0					32	19	2	0	0	0	0.50461	1	15991	15991		31.955	0	1	148050	+		2195	15460	1348	1355	2212	2212					0.0831892371959384
ALQIPLPTR	9	Unmodified	_ALQIPLPTR_					0	0	0		ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF;ENSG00000163660|ENST00000295926|CCNL1;ENST00000464679.5_1_3:156867272-156869982:-|nuORF;ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENST00000481173.1_1_3:156867820-156868247:-|nuORF	ENST00000470121.5_1_3:156866032-156869342:-|nuORF	ENST00000470121.5_1_3:156866032-156869342:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.8778076171875	3	336.878198	1007.61277	0.51586	0.00017378	-1.7501	-0.00058958	-1.2343	-0.0004158	336.8777071683176	17.097	0.29859	17.097	17.045	17.344	0					11	7	2	0	0	0	0.61124	1	4772	4772		15.333	0	1	497410			2196	5590	1349	1356	2213	2213					0.10926326093897387
ALQSHLCYW	9	Unmodified	_ALQSHLCYW_					0	0	0		nc|ENSG00000085788|O94830-2|DDHD2;ENSG00000085788|ENST00000397166|DDHD2;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000085788|O94830-2|DDHD2	nc|ENSG00000085788|O94830-2|DDHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.1797790527344	3	374.17966	1119.51715	0.32819	0.0001228	-0.53074	-0.00019859	-0.20255	-7.5789E-05	374.17951859544974	41.175	0.88272	41.175	40.775	41.658	0					55	37	2	0	0	0	0.61124	1	15749	15749		14.865	0	1	90468			2197	1735	1350	1357	2214	2214					-0.037827700886509774
ALQSIFFY	8	Unmodified	_ALQSIFFY_					0	0	0			REV__OR2T3|p.V289Cfs*2|1|0.13|ENSG00000196539|chr1:248474215-248474215|G/-|frameshift_variant	REV__OR2T3|p.V289Cfs*2|1|0.13|ENSG00000196539|chr1:248474215-248474215|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.26220703125	2	494.760561	987.506569	-0.065542	-3.2427E-05	-2.8611	-0.0014155	-2.9266	-0.001448	494.75883110093747	33.334	0.34782	33.334	33.084	33.431	0					24	14	3	0	0	0	0.70055	1	10754	10754		33.516	1.9858	1	317210	+		2198	16927	1351	1358	2215	2215					0.012315705285800504
ALRAAPTALP	10	Unmodified	_ALRAAPTALP_					0	0	0		nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.798095703125	2	490.798009	979.581465	-0.094356	-4.631E-05	0.55303	0.00027143	0.45868	0.00022512	490.79826075549073	35.349	0.32424	35.349	35.153	35.478	0					20	11	3	0	0	0	0.60076	1	12582	12582		34.173	2.2177	1	165920			2199	11818	1352	1359	2216	2216					0.09085753059787294
ALRALVKEQG	10	Unmodified	_ALRALVKEQG_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.8272705078125	2	542.827298	1083.64004	-0.17326	-9.4052E-05	0.96002	0.00052113	0.78676	0.00042707	542.8274594211298	24.246	0.1427	24.246	24.17	24.313	0					7	4	2	0	0	0	0.41335	1	7401	7401		54.776	5.2403	1	99990			2200	6376	1353	1360	2217	2217					0.10156809634258934
ALRKSFEM	8	Unmodified	_ALRKSFEM_					0	0	0		GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant	GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2623596191406	2	491.262945	980.511337	0.58485	0.00028732	-2.7537	-0.0013528	-2.1688	-0.0010655	491.2619842981095	33.526	0.27417	33.526	33.344	33.618	0					14	6	3	0	0	0	0.7126	1	12846	12846		31.955	5.1588	1	318960			2201	11154;8124	1354	1361	2218	2218					0.020301313996924364
ALRLTHESL	9	Unmodified	_ALRLTHESL_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000512100.5_1_4:8211452-8220050:+|nuORF;ENST00000506360.5_1_4:8207046-8220006:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.20013427734375	3	347.201341	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.32	1	26.32	25.82	26.82	0								0	0	0	0.28996	1	8263	8263		29.17	0	1				2202	3403	1355	1362	2219	2219					0.06444547708861137
ALRRDRSI	8	Unmodified	_ALRRDRSI_					0	0	0			REV__ENST00000574733.5_1_16:4519403-4524387:-|nuORF	REV__ENST00000574733.5_1_16:4519403-4524387:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2994689941406	2	493.796332	985.578111	3.4427	0.0017	-0.21486	-0.0001061	3.2278	0.0015939	493.7961694996357	25.201	0.1667	25.201	25.134	25.3	0					9	5	2	0	0	0	0.68432	1	7804	7804		35.618	0	1	113630	+		2203	20406	1356	1363	2220	2220					0.08474503005800216
ALRREEISYL	10	Unmodified	_ALRREEISYL_					0	0	0			REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.56866455078125	3	417.234822	1248.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.772	1	25.772	25.272	26.272	0								0	0	0	0.40063	1	7793	7793		30.318	1.741	1		+		2204	14715	1357	1364	2221	2221					0.06824159971870358
ALRRLSGALD	10	Unmodified	_ALRRLSGALD_					0	0	0		ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.8802795410156	3	357.88049	1070.61964	1.3221	0.00047316	-1.7113	-0.00061245	-0.3892	-0.00013929	357.8798943922377	17.617	0.21898	17.617	17.515	17.734	0					11	4	4	0	0	0	0.68218	1	5134	5134		16.717	0	1	381390			2205	6891	1358	1365	2222	2222					0.08715638974490503
ALRWQVSTPG	10	Unmodified	_ALRWQVSTPG_					0	0	0		ENST00000372980.3_1_20:42815125-42815341:-|nuORF	ENST00000372980.3_1_20:42815125-42815341:-|nuORF	ENST00000372980.3_1_20:42815125-42815341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.2060852050781	3	372.204974	1113.59309	0.77352	0.00028791	3.3988	0.0012651	4.1723	0.001553	372.2057609216127	14.918	0.21892	14.918	14.844	15.063	0					13	4	5	0	0	0	0.66699	1	3824	3824		26.063	0.9374	1	643030			2206	8985	1359	1366	2223	2223					0.04083950083122545
ALSAALVAK	9	Unmodified	_ALSAALVAK_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2685546875	2	422.268553	842.522553	-0.031095	-1.313E-05	0.70964	0.00029966	0.67855	0.00028653	422.2689485940569	29.646	0.13068	29.646	29.575	29.706	0					5	3	2	0	0	0	0.12239	1	10001	10001		74.255	17.534	1	65669			2207	2625	1360	1367	2224	2224					0.09499276765473041
ALSDAFQKLL	10	Unmodified	_ALSDAFQKLL_					0	0	0		ENSG00000278023|ENST00000620284|RDM1;nc|ENSG00000278023|Q8NG50-2|RDM1;nc|ENSG00000278023|Q8NG50-12|RDM1	ENSG00000278023|ENST00000620284|RDM1	ENSG00000278023|ENST00000620284|RDM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.21221923828125	3	369.213246	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.737	1	42.737	42.237	43.237	0								0	0	0	0.40797	1	14901	14901		28.081	2.0181	1				2208	8121	1361	1368	2225	2225					0.06978585165848017
ALSEKKPT	8	Unmodified	_ALSEKKPT_					0	0	0		nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.25567626953125	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.073	1	26.073	25.573	26.573	0								0	0	0	1.7419	1	9289	9289		45.952	1.8352	1				2209	6403	1362	1369	2226	2226					0.05538382523195651
ALSESSSS	8	Unmodified	_ALSESSSS_					0	0	0		nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-4|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3;nc|nan|Q9H6X5-2|C19orf44;ENSG00000105072|ENST00000221671|C19orf44	nc|ENSG00000256463|Q9BXA9-3|SALL3;ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.1743469238281	2	384.174515	766.334478	0.44818	0.00017218	-0.8726	-0.00033523	-0.42441	-0.00016305	384.1741702785005	16.604	0.1665	16.604	16.497	16.664	0					6	3	2	0	0	0	0.7914	1	4787	4787		14.664	5.1935	1	381740			2210	8027;2329	1363	1370	2227	2227					-0.05803625949602065
ALSETLILAR	10	Unmodified	_ALSETLILAR_					0	0	0			REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8302612304688	2	543.829506	1085.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.049	1	34.049	33.549	34.549	0								0	0	0	0.38797	1	13089	13089		34.173	6.0911	1		+		2211	21569	1364	1371	2228	2228					0.1050627405720661
ALSFIHHQV	9	Unmodified	_ALSFIHHQV_					0	0	0		ENSG00000086015|ENST00000361297|MAST2;MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant;ENST00000482881.1_1_1:46425082-46476635:+|nuORF	ENSG00000086015|ENST00000361297|MAST2	ENSG00000086015|ENST00000361297|MAST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2859497070312	2	526.287808	1050.56106	-1.2244	-0.0006444	-1.3701	-0.00072106	-2.5945	-0.0013655	526.2861010290833	35.657	0.098034	35.657	35.589	35.688	0					6	4	2	0	0	0	0.33044	1	12723	12723		47.657	3.1263	1	45361			2212	1741	1365	1372	2229	2229					0.03780582399986088
ALSGKPSGSH	10	Unmodified	_ALSGKPSGSH_					0	0	0		ENST00000578730.1_1_4:1243983-1244322:+|nuORF	ENST00000578730.1_1_4:1243983-1244322:+|nuORF	ENST00000578730.1_1_4:1243983-1244322:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7457275390625	2	470.745973	939.477394	-0.60885	-0.00028661	-0.33275	-0.00015664	-0.9416	-0.00044326	470.74583716639887	23.518	0.34398	23.518	23.341	23.685	0					14	8	2	0	0	0	0.62235	1	7168	7168		31.53	1.2121	1	176860			2213	10853	1366	1373	2230	2230					0.005234262322915129
ALSLPAATSL	10	Unmodified	_ALSLPAATSL_					0	0	0		ENST00000397354.7_1_X:39933702-39933888:-|nuORF	ENST00000397354.7_1_X:39933702-39933888:-|nuORF	ENST00000397354.7_1_X:39933702-39933888:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2762756347656	2	472.276575	942.538597	-0.023012	-1.0868E-05	-1.0187	-0.00048109	-1.0417	-0.00049195	472.2763658554646	29.07	0.099108	29.07	29.005	29.104	0					6	4	2	0	0	0	0.52707	1	9147	9147		42.396	6.7778	1	53356			2214	9218	1367	1374	2231	2231					0.06502938211713172
ALSNPILNK	9	Unmodified	_ALSNPILNK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2896423339844	2	485.290017	968.565481	0.028604	1.3881E-05	-0.46279	-0.00022459	-0.43419	-0.00021071	485.2897967341353	31.381	0.19803	31.381	31.291	31.489	0					12	8	2	0	0	0	0.14603	1	10093	10093		68.787	12.066	1	74945			2215	3788	1368	1375	2232	2232					0.07994046822898326
ALSNPILNK	9	Unmodified	_ALSNPILNK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.289794921875	2	485.290017	968.565481	-0.24525	-0.00011902	0.21529	0.00010448	-0.02996	-1.4539E-05	485.2900867736317	31.649	0.38033	31.649	31.479	31.86	0					19	9	3	0	0	0	0.10915	1	11516	11516		77.318	31.345	1	251810			2216	3788	1368	1375	2233	2233					0.07994046822898326
ALSNPILNK	9	Unmodified	_ALSNPILNK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.28973388671875	2	485.290017	968.565481	0.65418	0.00031747	-1.3651	-0.00066249	-0.71096	-0.00034502	485.2895018066654	31.643	0.38396	31.643	31.426	31.81	0					23	8	4	0	0	0	0.11898	1	11953	11953		75.043	16.261	1	440890			2217	3788	1368	1375	2234	2234					0.07994046822898326
ALSPLYCQS	9	Unmodified	_ALSPLYCQS_					0	0	0			REV__ENST00000436874.5_1_12:95656811-95660218:+|nuORF	REV__ENST00000436874.5_1_12:95656811-95660218:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2381591796875	2	491.239135	980.463718	-0.51806	-0.00025449	-1.5327	-0.00075292	-2.0508	-0.0010074	491.23831365229483	15.894	0.17369	15.894	15.763	15.937	0					6	4	2	0	0	0	0.59802	1	4208	4208		21.96	1.013	1	315760	+		2218	19209	1369	1376	2235	2235					-0.0272956759116596
ALSRRPNR	8	Unmodified	_ALSRRPNR_					0	0	0			REV__HDGF|p.F50Sfs*105|7|0.29|ENSG00000143321|chr1:156745312-156745312|A/-|frameshift_variant	REV__HDGF|p.F50Sfs*105|7|0.29|ENSG00000143321|chr1:156745312-156745312|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2903747558594	2	485.288674	968.562795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.366	1	31.366	30.866	31.866	0								0	0	0	1.7419	1	10387	10387		38.806	4.6336	1		+		2219	20720	1370	1377	2236	2236					0.07725636208613196
ALSSPVVIY	9	Unmodified	_ALSSPVVIY_					0	0	0			REV__ENST00000568547.5_1_15:31233444-31253097:-|nuORF	REV__ENST00000568547.5_1_15:31233444-31253097:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7734375	2	474.773668	947.532783	-0.60237	-0.00028599	-0.15859	-7.5292E-05	-0.76096	-0.00036128	474.7735707162403	35.94	0.26312	35.94	35.784	36.047	0					8	5	2	0	0	0	0.27781	1	13933	13933		52.299	11.727	1	121500	+		2220	16151	1371	1378	2237	2237					0.05691839700057244
ALSSQKREV	9	Unmodified	_ALSSQKREV_					0	0	0		SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2	SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant	SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28668212890625	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.616	1	40.616	40.116	41.116	0								0	0	0	0.3063	1	15487	15487		14.137	0	1				2221	6212	1372	1379	2238	2238					0.05383957329195255
ALSSSSIRVA	10	Unmodified	_ALSSSSIRVA_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.78216552734375	2	495.782556	989.550559	-0.062219	-3.0847E-05	-0.34595	-0.00017152	-0.40817	-0.00020236	495.78229020780765	13.941	0.12909	13.941	13.89	14.019	0					10	6	3	0	0	0	0.47859	1	2798	2798		47.657	2.6351	1	135450			2222	1083	1373	1380	2239	2239					0.05536554954915118
ALSTPVVEK	9	Unmodified	_ALSTPVVEK_					0	0	0		ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2762756347656	2	472.276575	942.538597	0.58648	0.00027698	-0.68103	-0.00032164	-0.094551	-4.4654E-05	472.27620597080954	26.223	0.61033	26.223	25.967	26.577	0					27	12	3	0	0	0	0.1424	1	9349	9349		69.628	12.907	1	1306800			2223	7442	1374	1381	2240	2240					0.06502938211713172
ALSTPVVEK	9	Unmodified	_ALSTPVVEK_					0	0	0		ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.27618408203125	2	472.276575	942.538597	-0.54356	-0.00025671	0.35538	0.00016784	-0.18818	-8.8872E-05	472.2766469776467	26.044	0.57512	26.044	25.778	26.353	0					27	11	3	0	0	0	0.33044	1	8300	8300		47.657	5.2612	1	380240			2224	7442	1374	1381	2241	2241					0.06502938211713172
ALSVGSAQLLA	11	Unmodified	_ALSVGSAQLLA_					0	0	0			REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF	REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3008422851562	2	515.300581	1028.58661	-0.11531	-5.9418E-05	0.72988	0.00037611	0.61457	0.00031669	515.3010284523403	36.237	0.27173	36.237	36.129	36.401	0					25	13	3	0	0	0	0.59204	1	12262	12262		37.508	1.0614	1	273810	+		2225	19576	1375	1382	2242	2242					0.07346012131779389
ALTEGYVGAL	10	Unmodified	_ALTEGYVGAL_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;ENST00000495879.1_1_3:61547928-61755020:+|nuORF;ENST00000475527.1_1_3:61547928-61734772:+|nuORF;PTPRG|p.A885Efs*11|1|0.09|ENSG00000144724|chr3:62262891-62262892|-/AAACAAAGGAA|frameshift_variant;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2659912109375	2	497.266207	992.517862	0.99517	0.00049486	-0.81735	-0.00040644	0.17782	8.8424E-05	497.2656675903337	42.956	0.32075	42.956	42.868	43.189	0					12	9	2	0	0	0	0.47621	1	17168	17168		47.916	10.104	1	339530			2226	4635	1376	1383	2243	2243					0.02130347832053303
ALTFRSAKGRW	11	Unmodified	_ALTFRSAKGRW_					0	0	0		SIRT4|p.N144Kfs*52|1|0.49|ENSG00000089163|chr12:120303988-120303989|-/A|frameshift_variant;ENSG00000089163|ENST00000202967|SIRT4	SIRT4|p.N144Kfs*52|1|0.49|ENSG00000089163|chr12:120303988-120303989|-/A|frameshift_variant	SIRT4|p.N144Kfs*52|1|0.49|ENSG00000089163|chr12:120303988-120303989|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.5783386230469	3	431.578923	1291.71494	-0.46945	-0.0002026	-0.90996	-0.00039272	-1.3794	-0.00059532	431.5785509226882	28.818	0.16913	28.818	28.707	28.877	0					6	3	2	0	0	0	0.78104	1	10497	10497		35.178	24.081	1	323880			2227	1805	1377	1384	2244	2244					0.08074992165506956
ALTKELNACR	10	Unmodified	_ALTKELNACR_					0	0	0		PPFIA2|p.F632Lfs*18|1|0.39|ENSG00000139220|chr12:81353217-81353217|A/-|frameshift_variant;PPFIA2|p.H786Lfs*48|1|0.16|ENSG00000139220|chr12:81341113-81341116|GTGA/-|frameshift_variant;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2	PPFIA2|p.F632Lfs*18|1|0.39|ENSG00000139220|chr12:81353217-81353217|A/-|frameshift_variant	PPFIA2|p.F632Lfs*18|1|0.39|ENSG00000139220|chr12:81353217-81353217|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.8034057617188	2	559.802965	1117.59138	1.069	0.00059841	-0.7238	-0.00040519	0.34517	0.00019322	559.8025272582854	16.031	0.089642	16.031	15.992	16.082	0					4	2	2	0	0	0	0.52275	1	3725	3725		42.864	2.0861	1	74369			2228	4317	1378	1385	2245	2245					0.037285730028543185
ALTKQCVLIES	11	Carbamidomethyl (C)	_ALTKQC(Carbamidomethyl (C))VLIES_	ALTKQC(1)VLIES		ALTKQC(44)VLIES		0	1	0		ENST00000486882.5_1_1:79093429-79094083:+|nuORF	ENST00000486882.5_1_1:79093429-79094083:+|nuORF	ENST00000486882.5_1_1:79093429-79094083:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	631.3441772460938	2	631.344663	1260.67477	1.5091	0.00095274	-2.0432	-0.0012899	-0.53409	-0.0003372	631.3435395534103	45.035	0.11396	45.035	44.958	45.071	0					11	6	3	0	0	0	0.50799	1	17466	17466		43.651	9.7292	1	169460			2229	10029	1379	1386	2246	2246	407				0.054862646600668086
ALTLSTVKY	9	Unmodified	_ALTLSTVKY_					0	0	0		ENSG00000110076|ENST00000265459|NRXN2;nc|ENSG00000110076|Q9P2S2-2|NRXN2;NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENST00000466324.1_1_11:64444212-64481216:-|nuORF	ENSG00000110076|ENST00000265459|NRXN2	ENSG00000110076|ENST00000265459|NRXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.29217529296875	2	498.292225	994.569897	-0.02252	-1.1222E-05	-0.15368	-7.6576E-05	-0.1762	-8.7798E-05	498.29200817795254	31.92	0.25427	31.92	31.81	32.064	0					12	5	3	0	0	0	0.098791	1	12071	12071		79.713	7.8351	1	716870			2230	2608	1380	1387	2247	2247					0.07239511245802532
ALTLSTVKY	9	Unmodified	_ALTLSTVKY_					0	0	0		ENSG00000110076|ENST00000265459|NRXN2;nc|ENSG00000110076|Q9P2S2-2|NRXN2;NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENST00000466324.1_1_11:64444212-64481216:-|nuORF	ENSG00000110076|ENST00000265459|NRXN2	ENSG00000110076|ENST00000265459|NRXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.29193115234375	2	498.292225	994.569897	-0.72973	-0.00036362	0.40189	0.00020026	-0.32785	-0.00016336	498.29244603624613	31.878	0.26582	31.878	31.768	32.034	0					15	5	4	0	0	0	0.38666	1	11972	11972		42.864	7.246	1	978650			2231	2608	1380	1387	2248	2248					0.07239511245802532
ALTLVMGPLD	10	Unmodified	_ALTLVMGPLD_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;ENST00000467978.1_1_2:37268272-37283611:-|nuORF	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2881469726562	2	515.286085	1028.55762	0.77357	0.00039861	3.2513	0.0016753	4.0248	0.0020739	515.2876640028368	28.589	0.21327	28.589	28.532	28.745	0					8	4	2	0	0	0	0.44469	1	10502	10502		51.335	0.14276	1	197950			2232	1023	1381	1388	2249	2249					0.044481515111101544
ALTPVTRQ	8	Unmodified	_ALTPVTRQ_					0	0	0			REV__ENST00000598490.1_1_19:42806306-42813777:+|nuORF	REV__ENST00000598490.1_1_19:42806306-42813777:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2608642578125	2	443.261259	884.507966	-1.1551	-0.00051202	0.75192	0.0003333	-0.4032	-0.00017872	443.26157663826314	27.406	0.12198	27.406	27.327	27.449	0					8	4	2	0	0	0	0.73426	1	8716	8716		29.15	1.2673	1	117920	+		2233	20581	1382	1389	2250	2250					0.061092046173257586
ALTQTDRKI	9	Unmodified	_ALTQTDRKI_					0	0	0		ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3034057617188	2	523.303655	1044.59276	0.0022651	1.1853E-06	0.11241	5.8826E-05	0.11468	6.0011E-05	523.3035821273116	20.647	0.16711	20.647	20.546	20.713	0					7	3	3	0	0	0	0.59802	1	6741	6741		21.96	1.9631	1	204670			2234	1247	1383	1390	2251	2251					0.07224530363282611
ALTSANLSSQ	10	Unmodified	_ALTSANLSSQ_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2550964355469	2	496.256371	990.498189	-2.3608	-0.0011716	-0.25542	-0.00012675	-2.6162	-0.0012983	496.25617706525844	23.108	0.31686	23.108	22.98	23.297	0					16	7	4	0	0	0	0.44292	1	7011	7011		47.657	15.702	1	236380			2235	7362	1384	1391	2252	2252					0.0025597182128649365
ALTSGIASSP	10	Unmodified	_ALTSGIASSP_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5;ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2469787597656	2	452.242732	902.470912	-0.058269	-2.6352E-05	-0.15748	-7.122E-05	-0.21575	-9.7572E-05	452.2425842893539	23.636	0.53778	23.636	23.432	23.969	0					36	13	4	0	0	0	0.57532	1	7200	7200		37.159	0	1	1839900			2236	90	1385	1392	2253	2253					0.015774882809068913
ALVAGPAS	8	Unmodified	_ALVAGPAS_					0	0	0			REV__ENST00000493734.5_1_22:20748789-20748969:+|nuORF	REV__ENST00000493734.5_1_22:20748789-20748969:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.197998046875	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.022	1	41.022	40.522	41.522	0								0	0	0	1.7419	1	15601	15601		26.796	2.2921	1		+		2237	19741	1386	1393	2254	2254					0.02582483743128705
ALVALVLW	8	Unmodified	_ALVALVLW_					0	0	0			REV__GRIN2B|p.K488Nfs*16|1|0.06|ENSG00000273079|chr12:13615529-13615530|-/CTTCTTCTAAATATAAG|frameshift_variant	REV__GRIN2B|p.K488Nfs*16|1|0.06|ENSG00000273079|chr12:13615529-13615530|-/CTTCTTCTAAATATAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.7818298339844	2	442.783839	883.553125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.174	1	18.174	17.674	18.674	0								0	0	0	1.7419	1	4704	4704		54.895	11.269	1		+		2238	17816	1387	1394	2255	2255					0.10669055150515305
ALVATPGKK	9	Unmodified	_ALVATPGKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.7813415527344	2	442.781828	883.549102	-0.2901	-0.00012845	-0.30096	-0.00013326	-0.59106	-0.00026171	442.78171833908857	18.202	0.21521	18.202	18.096	18.311	0					19	8	3	0	0	0	0.2873	1	4473	4473		51.335	8.861	1	139210			2239	2879	1388	1395	2256	2256					0.10266965656796856
ALVATPGKK	9	Unmodified	_ALVATPGKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7815856933594	2	442.781828	883.549102	-0.34525	-0.00015287	0.058198	2.5769E-05	-0.28705	-0.0001271	442.78175825195854	18.528	0.35927	18.528	18.282	18.641	0					21	8	3	0	0	0	0.023074	1	5417	5417		116.9	33.616	1	895380			2240	2879	1388	1395	2257	2257					0.10266965656796856
ALVAYLVLF	9	Unmodified	_ALVAYLVLF_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.8081970214844	2	504.810054	1007.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.348	1	24.348	23.848	24.848	0								0	0	0	0.28056	1	8513	8513		39.021	7.0666	1				2241	3218	1389	1396	2258	2258					0.10205593493458309
ALVHGGEL	8	Unmodified	_ALVHGGEL_					0	0	0		ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.2213439941406	2	398.221603	794.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.574	1	35.574	35.074	36.074	0								0	0	0	1.7419	1	13745	13745		44.531	9.3304	1				2242	8047	1390	1397	2259	2259					0.023215576631855583
ALVLWGPGA	9	Unmodified	_ALVLWGPGA_					0	0	0		ENST00000497389.6_1_10:46918355-46938364:+|nuORF;nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2	ENST00000497389.6_1_10:46918355-46938364:+|nuORF	ENST00000497389.6_1_10:46918355-46938364:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2535400390625	2	442.255446	882.496338	-2.9247	-0.0012935	-1.62	-0.00071646	-4.5447	-0.0020099	442.2547563508708	21.602	0.61404	21.602	21.374	21.988	0					24	14	2	0	0	0	0.31222	1	6265	6265		49.211	49.211	1	149510			2243	3261	1391	1398	2260	2260					0.05039007593995848
ALVMQMYLQ	9	Unmodified	_ALVMQMYLQ_					0	0	0			REV__NLRC5|p.F487Lfs*8|1|0.48|ENSG00000140853|chr16:57026401-57026401|T/-|frameshift_variant	REV__NLRC5|p.F487Lfs*8|1|0.48|ENSG00000140853|chr16:57026401-57026401|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7802734375	2	548.780113	1095.54567	1.8446	0.0010123	-1.3638	-0.00074841	0.4808	0.00026385	548.7793690037583	32.546	0.17062	32.546	32.424	32.595	0					8	4	2	0	0	0	0.45358	1	11970	11970		37.159	0.71236	1	410450	+		2244	15094	1392	1399	2261	2261					0.001722114962831256
ALVNKLVGL	9	Unmodified	_ALVNKLVGL_					0	0	0			REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.8050231933594	2	463.805303	925.596052	-0.72294	-0.0003353	-0.1549	-7.1841E-05	-0.87784	-0.00040715	463.80526688920776	29.259	0.2053	29.259	29.157	29.362	0					12	8	2	0	0	0	0.49003	1	9526	9526		33.516	0.70317	1	127050	+		2245	13923	1393	1400	2262	2262					0.13027825207950627
ALVQLDTST	9	Unmodified	_ALVQLDTST_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	316.5066223144531	3	316.506319	946.497126	1.7227	0.00054524	-0.68344	-0.00021631	1.0392	0.00032893	316.5060567738495	21.224	0.16188	21.224	21.126	21.288	0					10	3	4	0	0	0	0.48389	1	6894	6894		34.173	5.0025	1	526430	+		2246	16119	1394	1401	2263	2263					0.02173757452362679
ALVRASHI	8	Unmodified	_ALVRASHI_					0	0	0			REV__ENST00000526104.5_2_11:214726-214972:+|nuORF	REV__ENST00000526104.5_2_11:214726-214972:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.76171875	2	433.763969	865.513385	-0.52038	-0.00022572	-4.3857	-0.0019024	-4.9061	-0.0021281	433.7620103473848	31.995	0.12485	31.995	31.923	32.048	0					5	3	2	0	0	0	0.7126	1	11090	11090		31.955	1.4512	1	81829	+		2247	19993	1395	1402	2264	2264					0.07524928199791248
ALVSAVILAK	10	Unmodified	_ALVSAVILAK_					0	0	0		sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1;sp|Q6SW99|PP150_HCMVMTegumentproteinpp150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL32PE=3SV=1	sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.88653564453125	3	328.886582	983.637917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.172	1	34.172	33.672	34.672	0								0	0	0	0.29716	1	12070	12070		46.457	3.5925	1				2248	22461	1396	1403	2265	2265					0.14544380896461462
ALVSDLRSF	9	Unmodified	_ALVSDLRSF_					0	0	0			REV__ENST00000512003.7_1_5:109760554-109954135:-|nuORF	REV__ENST00000512003.7_1_5:109760554-109954135:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2794494628906	2	504.279649	1006.54475	2.9316	0.0014784	-3.3095	-0.0016689	-0.37783	-0.00019053	504.27833915254763	39.735	0.36494	39.735	39.592	39.957	0					16	8	3	0	0	0	0.16002	1	15735	15735		66.429	2.8954	1	273230	+		2249	19883	1397	1404	2266	2266					0.04173456443231771
ALVTITPFL	9	Unmodified	_ALVTITPFL_					0	0	0		nc|ENSG00000203581|Q96R84|OR1F2P	nc|ENSG00000203581|Q96R84|OR1F2P	nc|ENSG00000203581|Q96R84|OR1F2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7973327636719	2	487.799686	973.584819	-2.9104	-0.0014197	-1.5471	-0.00075466	-4.4575	-0.0021744	487.7989026090744	27.861	0.21891	27.861	27.773	27.992	0					8	5	2	0	0	0	0.23186	1	9174	9174		57.811	0	1	344260			2250	11717	1398	1405	2267	2267					0.09697003113808478
ALWFLMKQ	8	Unmodified	_ALWFLMKQ_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7874145507812	2	518.786056	1035.55756	0.26465	0.0001373	2.479	0.0012861	2.7437	0.0014234	518.7873468549698	34.948	0.31474	34.948	34.83	35.145	0					10	6	2	0	0	0	0.66372	1	13453	13453		20.482	0	1	213810			2251	10004	1399	1406	2268	2268					0.04120196301778378
ALWGARSPK	9	Unmodified	_ALWGARSPK_					0	0	0		ENST00000563211.5_1_16:30662924-30663662:+|nuORF;ENST00000565410.5_1_16:30662432-30664164:+|nuORF;PRR14|p.A167Lfs*21|1|0.41|ENSG00000156858|chr16:30653092-30653092|C/-|frameshift_variant;PRR14|p.P279Qfs*2|2|0.35|ENSG00000156858|chr16:30654800-30654800|C/-|frameshift_variant;PRR14|p.M280Nfs*19|2|0.34|ENSG00000156858|chr16:30654799-30654800|-/C|frameshift_variant;PRR14|p.N318Kfs*8|1|0.15|ENSG00000156858|chr16:30654921-30654922|-/A|frameshift_variant;ENSG00000156858|ENST00000300835|PRR14	ENST00000563211.5_1_16:30662924-30663662:+|nuORF	ENST00000563211.5_1_16:30662924-30663662:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.28173828125	2	493.282526	984.550499	-2.5743	-0.0012699	1.1495	0.00056704	-1.4248	-0.00070282	493.2830195011308	34.199	0.19955	34.199	34.12	34.32	0					15	6	3	0	0	0	0.22377	1	12085	12085		58.782	58.782	1	431520			2252	5187	1400	1407	2269	2269					0.05760599745565287
ALWISTSSAG	10	Unmodified	_ALWISTSSAG_					0	0	0		nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7571105957031	2	496.756007	991.497461	0.97544	0.00048456	0.55486	0.00027563	1.5303	0.00076019	496.7564335963112	37.446	0.26107	37.446	37.349	37.61	0					9	5	2	0	0	0	0.33577	1	14662	14662		63.306	11.971	1	103510			2253	3993	1401	1408	2270	2270					0.001371771722460835
ALWLDGTLG	9	Unmodified	_ALWLDGTLG_					0	0	0		ENST00000541760.1_1_11:73360074-73362936:+|nuORF;ENST00000544532.5_1_11:73360074-73362871:+|nuORF;nc|ENSG00000021300|Q9UF11-4|PLEKHB1;nc|ENSG00000021300|Q9UF11-2|PLEKHB1;nc|ENSG00000021300|Q9UF11-3|PLEKHB1;ENSG00000021300|ENST00000354190|PLEKHB1	ENST00000541760.1_1_11:73360074-73362936:+|nuORF	ENST00000541760.1_1_11:73360074-73362936:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2529296875	2	473.255643	944.496732	-2.5097	-0.0011877	-1.2346	-0.00058426	-3.7443	-0.001772	473.25538257826474	24.93	0.19804	24.93	24.844	25.042	0					7	4	2	0	0	0	0.32741	1	7846	7846		47.916	5.0513	1	99232			2254	1103	1402	1409	2271	2271					0.02226382523213033
ALYGGRILK	9	Unmodified	_ALYGGRILK_					0	0	0		ENST00000318524.6_1_9:33294912-33295365:+|nuORF	ENST00000318524.6_1_9:33294912-33295365:+|nuORF	ENST00000318524.6_1_9:33294912-33295365:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.80804443359375	2	495.808377	989.6022	-0.37808	-0.00018746	0.17914	8.882E-05	-0.19894	-9.8636E-05	495.8083963620971	27.871	0.34216	27.871	27.779	28.121	0					21	8	4	0	0	0	0.13519	1	9776	9776		71.296	10.324	1	1245700			2255	8594	1403	1410	2272	2272					0.10698343439457858
ALYGGSLQK	9	Unmodified	_ALYGGSLQK_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;PGAP1|p.K353Sfs*13|1|0.37|ENSG00000197121|chr2:196892376-196892377|TT/-|frameshift_variant	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.76080322265625	2	468.761092	935.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.441	1	26.441	25.941	26.941	0								0	0	0	0.19749	1	8514	8514		51.335	1.8939	1				2256	7429	1404	1411	2273	2273					0.037297848974731096
ALYGVVNVK	9	Unmodified	_ALYGVVNVK_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.786865234375	2	481.78711	961.559667	-1.3343	-0.00064282	-0.71499	-0.00034447	-2.0492	-0.0009873	481.7873023764134	34.637	0.13507	34.637	34.567	34.702	0					10	6	2	0	0	0	0.1236	1	11689	11689		73.975	29.598	1	69302			2257	3967	1405	1412	2274	2274					0.07734948311224343
ALYGVVNVK	9	Unmodified	_ALYGVVNVK_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7870178222656	2	481.78711	961.559667	0.68969	0.00033228	-2.7495	-0.0013247	-2.0598	-0.00099239	481.7864308748818	34.828	0.27758	34.828	34.727	35.004	0					20	8	3	0	0	0	0.036372	1	13451	13451		102.77	36.97	1	288280			2258	3967	1405	1412	2275	2275					0.07734948311224343
ALYGVVNVK	9	Unmodified	_ALYGVVNVK_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7867126464844	2	481.78711	961.559667	0.90495	0.00043599	-2.4369	-0.001174	-1.5319	-0.00073806	481.7864105073091	34.775	0.2622	34.775	34.668	34.93	0					14	5	4	0	0	0	0.077948	1	13374	13374		85.359	30.583	1	628220			2259	3967	1405	1412	2276	2276					0.07734948311224343
ALYKVADERP	10	Unmodified	_ALYKVADERP_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.54437255859375	3	387.880267	1160.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.946	1	21.946	21.446	22.446	0								0	0	0	0.41137	1	6453	6453		27.047	0	1		+		2260	14100	1406	1413	2277	2277					0.04508799534755781
ALYLRVVE	8	Unmodified	_ALYLRVVE_					0	0	0			REV__nc|ENSG00000155034|Q96ME1-3|FBXL18	REV__nc|ENSG00000155034|Q96ME1-3|FBXL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.78729248046875	2	481.78711	961.559667	0.044066	2.1231E-05	-4.2176	-0.002032	-4.1735	-0.0020108	481.78694528569025	34.576	0.15603	34.576	34.486	34.642	0					10	6	2	0	0	0	0.49887	1	11296	11296		60.294	5.5293	1	62184	+		2261	15585	1407	1414	2278	2278					0.07734948311224343
ALYPEEIL	8	Unmodified	_ALYPEEIL_					0	0	0		ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2603759765625	2	474.257851	946.501149	2.361	0.0011197	1.2514	0.00059351	3.6125	0.0017132	474.2585673772531	26.829	0.41633	26.829	26.62	27.036	0					18	8	3	0	0	0	0.34985	1	9543	9543		65.897	0	1	1124500			2262	4550	1408	1415	2279	2279					0.02575846946092497
ALYRPQPTQ	9	Unmodified	_ALYRPQPTQ_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2927856445312	2	537.290548	1072.56654	1.8768	0.0010084	1.1994	0.0006444	3.0761	0.0016528	537.2912104177286	18.351	0.72326	18.351	17.988	18.711	0					49	14	6	0	0	0	0.095583	1	5555	5555		96.19	41.414	1	22558000	+		2263	15125	1409	1416	2280	2280					0.033162611917987306
ALYSDLHKLT	10	Unmodified	_ALYSDLHKLT_					0	0	0			REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.8192749023438	2	580.819138	1159.62372	-0.36276	-0.0002107	0.86239	0.0005009	0.49963	0.0002902	580.819614287073	20.888	1.3598	20.888	20.645	22.005	0					43	27	2	0	0	0	0.64178	1	6765	6765		29.15	3.5755	1	181930	+		2264	17616	1410	1417	2281	2281					0.050296836775032716
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.79052734375	2	501.790184	1001.56581	-0.04392	-2.2038E-05	0.36612	0.00018372	0.3222	0.00016168	501.790383963349	16.501	0.22966	16.501	16.403	16.632	0					16	7	3	0	0	0	0.021015	1	3749	3749		104.06	52.721	1	1599400			2265	2710	1411	1418	2282	2282					0.06509466542752307
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.78997802734375	2	501.790184	1001.56581	-0.087336	-4.3824E-05	-0.3855	-0.00019344	-0.47284	-0.00023727	501.7900705983083	16.736	0.53302	16.736	16.691	17.224	0					30	13	5	0	0	0	0.0055674	1	4600	4600		139.97	68.675	1	8413300			2266	2710	1411	1418	2283	2283					0.06509466542752307
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.8624267578125	3	334.862548	1001.56581	-0.66782	-0.00022363	0.86949	0.00029116	0.20167	6.7532E-05	334.8628077830849	16.474	0.19663	16.474	16.397	16.593	0					14	5	4	0	0	0	0.4966	1	3951	3951		32.812	2.4947	1	1574900			2267	2710	1411	1418	2284	2284					0.06509466542752307
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7900085449219	2	501.790184	1001.56581	-0.98978	-0.00049666	0.84459	0.00042381	-0.14519	-7.2857E-05	501.7906202294077	16.467	0.22197	16.467	16.384	16.606	0					12	6	3	0	0	0	0.010427	1	3960	3960		136.27	62.013	1	1242900			2268	2710	1411	1418	2285	2285					0.06509466542752307
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7901306152344	2	501.790184	1001.56581	-0.55548	-0.00027873	0.32689	0.00016403	-0.22859	-0.00011471	501.7903834703783	16.704	0.50014	16.704	16.547	17.047	0					23	10	3	0	0	0	0.019258	1	4811	4811		107.01	43.701	1	6257900			2269	2710	1411	1418	2286	2286					0.06509466542752307
ALYSPRKPA	9	Unmodified	_ALYSPRKPA_					0	0	0			REV__ENST00000334082.10_1_5:78808944-78809028:-|nuORF	REV__ENST00000334082.10_1_5:78808944-78809028:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.86248779296875	3	334.862548	1001.56581	-0.040251	-1.3479E-05	-0.026081	-8.7336E-06	-0.066332	-2.2212E-05	334.8625332103648	16.519	0.16514	16.519	16.442	16.607	0					8	4	3	0	0	0	0.54267	1	3945	3945		27.882	0	1	641260	+		2270	18398	1412	1419	2287	2287					0.06509466542752307
ALYSRHRF	8	Unmodified	_ALYSRHRF_					0	0	0			REV__nc|ENSG00000123870|P52743|ZNF137P	REV__nc|ENSG00000123870|P52743|ZNF137P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.287109375	2	525.2856	1048.55665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.251	1	42.251	41.751	42.751	0								0	0	0	1.7419	1	16852	16852		25.45	0	1		+		2271	17569	1413	1420	2288	2288					0.03431117977083886
ALYYQKNPN	9	Unmodified	_ALYYQKNPN_					0	0	0			REV__ENST00000496433.5_1_2:3193107-3197993:-|nuORF	REV__ENST00000496433.5_1_2:3193107-3197993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.7826538085938	2	555.782556	1109.55056	1.4191	0.0007887	-0.87676	-0.00048729	0.54233	0.00030142	555.7818721772672	23.549	0.1887	23.549	23.477	23.665	0					11	7	2	0	0	0	0.33044	1	6827	6827		31.955	12.595	1	165300	+		2272	12969	1414	1421	2289	2289					0.00016554954913772235
AMACLAWRL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AMACLAWRL_					1	0	0		ECI2|p.Y5C|1|0.27|ENSG00000198721|chr6:4135547-4135547|T/C|missense_variant	ECI2|p.Y5C|1|0.27|ENSG00000198721|chr6:4135547-4135547|T/C|missense_variant	ECI2|p.Y5C|1|0.27|ENSG00000198721|chr6:4135547-4135547|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7741088867188	2	538.772622	1075.53069	3.3993	0.0018314	-0.76473	-0.00041202	2.6345	0.0014194	538.7723311437633	34.221	0.35674	34.221	34.118	34.474	0					18	7	4	0	0	0	0.23186	1	13104	13104		57.811	10.154	1	1697800			2273	876	1415	1422	2290	2290					-0.004052355810699737
AMAIRDSAGG	10	Unmodified	_AMAIRDSAGG_					0	0	0		ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7311096191406	2	474.732009	947.449465	-1.5858	-0.00075281	0.53033	0.00025177	-1.0554	-0.00050104	474.7323785059249	23.428	0.35162	23.428	23.246	23.598	0					17	12	2	0	0	0	0.39566	1	7046	7046		56.721	3.7844	1	94504			2274	5687	1416	1423	2291	2291					-0.026362200194512297
AMAKNRLQ	8	Unmodified	_AMAKNRLQ_					0	0	0		nc|ENSG00000146166|Q5TDP6-2|LGSN;LGSN|p.K343Nfs*7|1|0.18|ENSG00000146166|chr6:63280522-63280522|T/-|frameshift_variant;LGSN|p.Q336Ifs*15|1|0.05|ENSG00000146166|chr6:63280545-63280546|-/AT|frameshift_variant;ENSG00000146166|ENST00000370657|LGSN	nc|ENSG00000146166|Q5TDP6-2|LGSN	nc|ENSG00000146166|Q5TDP6-2|LGSN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2635192871094	2	466.260736	930.50692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.729	1	20.729	20.229	21.229	0								0	0	0	1.7419	1	6631	6631		42.474	1.9018	1				2275	4714	1417	1424	2292	2292					0.038886669767634885
AMANRAAGK	9	Unmodified	_AMANRAAGK_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6;ENST00000461403.1_1_X:63557232-63569902:-|nuORF;nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7;ENSG00000102043|ENST00000374852|MTMR8	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.23480224609375	2	445.237261	888.45997	0.56126	0.0002499	0.52513	0.00023381	1.0864	0.0004837	445.23758401989096	15.036	0.50721	15.036	14.977	15.484	0					16	10	2	0	0	0	0.32741	1	4018	4018		47.916	3.7988	1	894480			2276	4333	1418	1425	2293	2293					0.011278074256210857
AMAPLLPPAM	10	Unmodified	_AMAPLLPPAM_					0	0	0		ENST00000361937.7_1_15:41388526-41408484:-|nuORF	ENST00000361937.7_1_15:41388526-41408484:-|nuORF	ENST00000361937.7_1_15:41388526-41408484:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.270751953125	2	506.271924	1010.52929	0.13856	7.015E-05	-1.908	-0.00096596	-1.7694	-0.00089581	506.2707056230465	31.355	0.14913	31.355	31.305	31.454	0					5	3	2	0	0	0	0.3122	1	11828	11828		65.897	11.133	1	85226			2277	8886	1419	1426	2294	2294					0.02445130330181655
AMAPPSHRK	9	Unmodified	_AMAPPSHRK_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.765869140625	2	497.766186	993.517819	0.80214	0.00039928	-1.5111	-0.00075217	-0.70896	-0.0003529	497.76553079185055	13.982	0.31079	13.982	13.873	14.184	0					14	6	3	0	0	0	0.38666	1	3539	3539		42.864	0.38981	1	795570			2278	4448	1420	1427	2295	2295					0.02080069351052316
AMAPPSHRK	9	Unmodified	_AMAPPSHRK_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7661437988281	2	497.766186	993.517819	-2.2711	-0.0011305	2.3646	0.001177	0.093464	4.6523E-05	497.76757474322744	13.831	0.10196	13.831	13.775	13.877	0					8	5	2	0	0	0	0.26904	1	2829	2829		53.351	10.877	1	97471			2279	4448	1420	1427	2296	2296					0.02080069351052316
AMARAPGQ	8	Unmodified	_AMARAPGQ_					0	0	0			REV__ENST00000600353.1_1_19:58446215-58446374:-|nuORF	REV__ENST00000600353.1_1_19:58446215-58446374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.204345703125	2	401.20543	800.396307	0.60226	0.00024163	-3.4367	-0.0013788	-2.8344	-0.0011372	401.20398941499997	35.075	0.13978	35.075	35.023	35.162	0					9	6	2	0	0	0	0.74117	1	11499	11499		28.254	2.8041	1	68477	+		2280	20594	1421	1428	2297	2297					-0.011875530114593857
AMASPLPRE	9	Unmodified	_AMASPLPRE_					0	0	0		TNKS1BP1|p.S279Pfs*56|1|0.42|ENSG00000149115|chr11:57313854-57313854|G/-|frameshift_variant;TNKS1BP1|p.K1000Rfs*133|1|0.41|ENSG00000149115|chr11:57309712-57309712|T/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	TNKS1BP1|p.S279Pfs*56|1|0.42|ENSG00000149115|chr11:57313854-57313854|G/-|frameshift_variant	TNKS1BP1|p.S279Pfs*56|1|0.42|ENSG00000149115|chr11:57313854-57313854|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2523498535156	2	486.252577	970.490601	-0.55302	-0.00026891	0.32356	0.00015733	-0.22946	-0.00011157	486.2525934717377	23.859	1.4956	23.859	23.683	25.179	0					50	30	3	0	0	0	0.33044	1	8130	8130		47.657	8.4045	1	311240			2281	4862	1422	1429	2298	2298					0.004175410200218721
AMCYLKLR	8	Unmodified	_AMCYLKLR_					0	0	0		ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2687683105469	2	499.269716	996.524878	-2.1689	-0.0010829	1.7294	0.00086342	-0.43953	-0.00021945	499.2706291383849	16.468	0.78607	16.468	16.285	17.071	0					59	22	5	0	0	0	0.74117	1	4085	4085		28.254	28.254	1	19239000			2282	1913	1423	1430	2299	2299					0.02647665907272767
AMDDPNCNFI	10	Oxidation (M)	_AM(Oxidation (M))DDPNCNFI_		AM(1)DDPNCNFI		AM(44)DDPNCNFI	0	0	1			REV__ENST00000586435.1_1_17:33316537-33318256:+|nuORF	REV__ENST00000586435.1_1_17:33316537-33318256:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.2247314453125	2	578.225899	1154.43724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.888	1	18.888	18.388	19.388	0								0	0	0	0.3428	1	5878	5878		44.117	9.9443	1		+		2283	12835	1424	1431	2300	2300		494			-0.1337962454481385
AMDIGTPYQF	10	Unmodified	_AMDIGTPYQF_					0	0	0		KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant;nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1	KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant	KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.7601318359375	2	571.762975	1141.5114	-1.4097	-0.00080602	-2.5368	-0.0014504	-3.9465	-0.0022565	571.7613119937097	37.807	0.1114	37.807	37.729	37.841	0					7	5	2	0	0	0	0.54197	1	13532	13532		40.778	2.9666	1	33748			2284	4558	1425	1432	2301	2301					-0.053699133909731245
AMELEYVL	8	Unmodified	_AMELEYVL_					0	0	0		nc|ENSG00000167107|Q96CM8-3|ACSF2;ENSG00000167107|ENST00000300441|ACSF2;nc|ENSG00000167107|Q96CM8-2|ACSF2	nc|ENSG00000167107|Q96CM8-3|ACSF2	nc|ENSG00000167107|Q96CM8-3|ACSF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2426452636719	2	484.243886	966.47322	-0.194	-9.3944E-05	-1.6107	-0.00077999	-1.8047	-0.00087394	484.2430076858166	42.815	0.14614	42.815	42.752	42.898	0					12	7	2	0	0	0	0.8006	1	16189	16189		20.482	0	1	62970			2285	5969	1426	1433	2302	2302					-0.011357993056435589
AMFNIRNIGK	10	Unmodified	_AMFNIRNIGK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF;ENST00000493479.1_1_4:153472952-153473506:-|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.550048828125	3	388.549976	1162.6281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.413	1	35.413	34.913	35.913	0								0	0	0	0.40063	1	13278	13278		30.318	0	1				2286	4672	1427	1434	2303	2303					0.05328869619415855
AMGDVVIFK	9	Unmodified	_AMGDVVIFK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.26776123046875	2	490.267696	978.520839	0.81326	0.00039872	2.4699	0.0012109	3.2832	0.0016096	490.26686198295863	41.327	0.35818	41.327	41.25	41.608	0					31	17	3	0	0	0	0.22377	1	15706	15706		58.782	10.866	1	103680			2287	5632	1428	1435	2304	2304					0.03071899685221524
AMGDVVIFK	9	Unmodified	_AMGDVVIFK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.26812744140625	2	490.267696	978.520839	-0.069827	-3.4234E-05	0.50941	0.00024975	0.43958	0.00021551	490.26810216452344	41.309	0.1783	41.309	41.225	41.403	0					14	8	2	0	0	0	0.063823	1	16233	16233		90.37	34.866	1	88038			2288	5632	1428	1435	2305	2305					0.03071899685221524
AMGDVVIFK	9	Unmodified	_AMGDVVIFK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2674255371094	2	490.267696	978.520839	-0.53702	-0.00026328	0.43456	0.00021305	-0.10246	-5.0233E-05	490.267621537157	41.239	0.27291	41.239	41.115	41.387	0					11	6	2	0	0	0	0.078509	1	16403	16403		85.161	17.667	1	134590			2289	5632	1428	1435	2306	2306					0.03071899685221524
AMGIWVVSV	9	Unmodified	_AMGIWVVSV_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.26287841796875	2	481.262413	960.510274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.46	1	28.46	27.96	28.96	0								0	0	0	0.30835	1	9449	9449		33.516	0.70317	1				2290	4003	1429	1436	2307	2307					0.028439170307933637
AMGPKINVVF	10	Unmodified	_AMGPKINVVF_					0	0	0			REV__TRPA1|p.L736F|1|0.3|ENSG00000104321|chr8:72038954-72038954|G/A|missense_variant	REV__TRPA1|p.L736F|1|0.3|ENSG00000104321|chr8:72038954-72038954|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3029174804688	2	538.30207	1074.58959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.883	1	31.883	31.383	32.383	0								0	0	0	0.33119	1	12067	12067		45.952	6.9305	1		+		2291	22238	1430	1437	2308	2308					0.055275639849242
AMHIFTLG	8	Unmodified	_AMHIFTLG_					0	0	0			REV__ENSG00000119041|ENST00000263956|GTF3C3	REV__ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2352600097656	2	445.233656	888.452759	0.18797	8.3691E-05	4.4135	0.0019651	4.6015	0.0020488	445.23561627710916	14.728	0.12386	14.728	14.685	14.809	0					7	5	2	0	0	0	0.67475	1	3085	3085		37.028	6.5248	1	45719	+		2292	14232	1431	1438	2309	2309					0.004070748252161138
AMHIFTLG	8	Unmodified	_AMHIFTLG_					0	0	0			REV__ENSG00000119041|ENST00000263956|GTF3C3	REV__ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.23468017578125	2	445.233656	888.452759	0.80033	0.00035633	3.36	0.001496	4.1603	0.0018523	445.2352161445092	15.003	0.5701	15.003	14.844	15.414	0					26	11	3	0	0	0	0.527	1	3847	3847		57.453	0.7316	1	893290	+		2293	14232	1431	1438	2310	2310					0.004070748252161138
AMIEAAPVLL	10	Unmodified	_AMIEAAPVLL_					0	0	0			REV__HHLA1|p.A371V|1|0.18|ENSG00000132297|chr8:132077785-132077785|G/A|missense_variant	REV__HHLA1|p.A371V|1|0.18|ENSG00000132297|chr8:132077785-132077785|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.1995849609375	3	343.200061	1026.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.375	1	27.375	26.875	27.875	0								0	0	0	0.4201	1	8947	8947		17.468	2.6031	1		+		2294	20746	1432	1439	2311	2311					0.06612741890762663
AMIENFNAK	9	Unmodified	_AMIENFNAK_					0	0	0		ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000156269|ENST00000286794|NAA11;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF	ENST00000466877.5_1_X:153197755-153200402:-|nuORF	ENST00000466877.5_1_X:153197755-153200402:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2578735351562	2	519.257859	1036.50117	0.2829	0.0001469	0.14986	7.7817E-05	0.43276	0.00022471	519.2576620493751	30.739	0.16855	30.739	30.629	30.797	0					5	3	2	0	0	0	0.24334	1	11424	11424		56.434	17.628	1	172020			2295	2150	1433	1440	2312	2312					-0.01562476325557327
AMKGRLAN	8	Unmodified	_AMKGRLAN_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7418518066406	2	430.742179	859.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.303	1	19.303	18.803	19.803	0								0	0	0	1.7419	1	5215	5215		33.516	3.674	1				2296	2230	1434	1441	2313	2313					0.03444995430993458
AMLAATDLGL	10	Oxidation (M)	_AM(Oxidation (M))LAATDLGL_		AM(1)LAATDLGL		AM(71)LAATDLGL	0	0	1		ENSG00000167355|ENST00000300773|OR51B5	ENSG00000167355|ENST00000300773|OR51B5	ENSG00000167355|ENST00000300773|OR51B5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.26361083984375	2	496.260068	990.505582	2.877	0.0014278	-1.4937	-0.00074129	1.3833	0.00068647	496.2621417063045	30.185	0.46149	30.185	29.963	30.425	0					27	9	5	0	0	0	0.26673	1	11198	11198		71.296	7.9894	1	2272700			2297	5986	1435	1442	2314	2314		244			0.009949880973636027
AMLDTVVFK	9	Oxidation (M)	_AM(Oxidation (M))LDTVVFK_		AM(1)LDTVVFK		AM(59)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2788696289062	2	520.27826	1038.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.181	1	37.181	36.681	37.681	0								0	0	0	0.15451	1	12185	12185		58.782	19.529	1				2298	2891	1436	1443	2315	2315		123			0.024238649940798496
AMLDTVVFK	9	Oxidation (M)	_AM(Oxidation (M))LDTVVFK_		AM(1)LDTVVFK		AM(93)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7802734375	2	520.27826	1038.54197	2.0914	0.0010881	-0.57033	-0.00029673	1.5211	0.0007914	520.2779634870903	37.515	0.39365	37.515	37.335	37.729	0					24	11	3	0	0	0	0.055856	1	14186	14186		93.195	26.766	1	212770			2299	2891	1436	1443	2316	2316		123			0.024238649940798496
AMLDTVVFK	9	Oxidation (M)	_AM(Oxidation (M))LDTVVFK_		AM(1)LDTVVFK		AM(82)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2793579101562	2	520.27826	1038.54197	1.106	0.00057544	0.083251	4.3314E-05	1.1893	0.00061875	520.2781450675294	37.457	0.27414	37.457	37.335	37.61	0					17	8	3	0	0	0	0.087861	1	14621	14621		82.241	18.934	1	134100			2300	2891	1436	1443	2317	2317		123			0.024238649940798496
AMLDTVVFK	9	Unmodified	_AMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2819213867188	2	512.280803	1022.54705	1.1949	0.00061215	-0.036507	-1.8702E-05	1.1584	0.00059344	512.2810495971486	42.886	0.216	42.886	42.788	43.004	0					26	13	3	0	0	0	0.07136	1	13586	13586		87.696	10.922	1	185090			2301	2891	1436	1444	2318	2318					0.03668168856700049
AMLDTVVFK	9	Unmodified	_AMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2807006835938	2	512.280803	1022.54705	1.0571	0.00054154	-0.96212	-0.00049287	0.094994	4.8664E-05	512.2803923874408	43.172	0.34713	43.172	43.047	43.394	0					51	19	4	0	0	0	0.01873	1	16298	16298		124.08	57.651	1	1223400			2302	2891	1436	1444	2319	2319					0.03668168856700049
AMLDTVVFK	9	Unmodified	_AMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.281494140625	2	512.280803	1022.54705	0.90851	0.00046541	-0.83926	-0.00042994	0.069254	3.5478E-05	512.2807911537436	42.935	0.17223	42.935	42.862	43.035	0					16	10	3	0	0	0	0.055856	1	14946	14946		93.195	43.171	1	102480			2303	2891	1436	1444	2320	2320					0.03668168856700049
AMLDTVVFK	9	Unmodified	_AMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.281494140625	2	512.280803	1022.54705	0.45258	0.00023185	0.66749	0.00034194	1.1201	0.00057379	512.2814256504319	42.951	0.20729	42.951	42.857	43.064	0					27	12	3	0	0	0	0.30951	1	14937	14937		49.442	1.7842	1	157010			2304	2891	1436	1444	2321	2321					0.03668168856700049
AMLDTVVFK	9	Unmodified	_AMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2807006835938	2	512.280803	1022.54705	0.056581	2.8986E-05	0.035873	1.8377E-05	0.092455	4.7363E-05	512.2809257393803	43.089	0.38727	43.089	42.96	43.347	0					29	12	4	0	0	0	0.0071053	1	17220	17220		148.99	69.536	1	1656700			2305	2891	1436	1444	2322	2322					0.03668168856700049
AMLDTVVFK	9	Unmodified	_AMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2808837890625	2	512.280803	1022.54705	1.4241	0.00072952	-1.3242	-0.00067838	0.099828	5.114E-05	512.2802583796016	43.107	0.46396	43.107	42.928	43.392	0					36	15	4	0	0	0	0.012231	1	17212	17212		136.27	53.963	1	2394200			2306	2891	1436	1444	2323	2323					0.03668168856700049
AMLEESKLM	9	Unmodified	_AMLEESKLM_					0	0	0		tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.261474609375	2	526.261753	1050.50895	0.46357	0.00024396	-0.29748	-0.00015655	0.16609	8.7408E-05	526.2612714421326	32.839	0.14752	32.839	32.794	32.942	0					9	5	2	0	0	0	0.39215	1	11000	11000		42.396	3.1433	1	80158			2307	22886	1437	1445	2324	2324					-0.014280851202784106
AMLFHYVI	8	Unmodified	_AMLFHYVI_					0	0	0			REV__tr|U7SHY6|U7SHY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02200PE=4SV=1	REV__tr|U7SHY6|U7SHY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02200PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2658996582031	2	497.264956	992.515359	0.78382	0.00038977	1.7238	0.00085717	2.5076	0.0012469	497.26575856521544	42.997	0.20486	42.997	42.905	43.11	0					19	10	3	0	0	0	0.55232	1	16845	16845		54.895	11.269	1	125510	+		2308	21713	1438	1446	2325	2325					0.018802208934062037
AMLHLAAHLL	10	Unmodified	_AMLHLAAHLL_					0	0	0			REV__ENST00000535177.1_1_11:61121022-61124194:-|nuORF	REV__ENST00000535177.1_1_11:61121022-61124194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.318359375	2	545.315512	1088.61647	3.7325	0.0020354	0.64154	0.00034984	4.3741	0.0023852	545.3157731425381	51.368	1.2071	51.368	50.93	52.137	0					179	71	3	0	0	0	0.71807	1	20022	20022		19.36	1.0356	1	403540	+		2309	15803	1439	1447	2326	2326					0.07570672596102668
AMLLLRVGTL	10	Unmodified	_AMLLLRVGTL_					0	0	0		ENST00000281543.5_1_4:44680449-44680617:+|nuORF	ENST00000281543.5_1_4:44680449-44680617:+|nuORF	ENST00000281543.5_1_4:44680449-44680617:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8389892578125	2	543.83882	1085.66309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.285	1	13.285	12.785	13.785	0								0	0	0	0.4201	1	3199	3199		14.865	0	1				2310	8413	1440	1448	2327	2327					0.12368112427407141
AMLPPLKSG	9	Unmodified	_AMLPPLKSG_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ZZEF1|p.A2094T|1|0.37|ENSG00000074755|chr17:4042455-4042455|C/T|missense_variant;nc|ENSG00000074755|O43149-2|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.264404296875	2	457.262413	912.510274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.797	1	47.797	47.297	48.297	0								0	0	0	0.37146	1	15955	15955		19.36	0.25645	1				2311	1529	1441	1449	2328	2328					0.05051917030777986
AMLQLHLPMN	10	Unmodified	_AMLQLHLPMN_					0	0	0		nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	584.30517578125	2	584.304287	1166.59402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.049	1	23.049	22.549	23.549	0								0	0	0	0.40862	1	6970	6970		27.882	6.1965	1				2312	11806	1442	1450	2329	2329					0.01738705136176577
AMLYLPLIG	9	Oxidation (M)	_AM(Oxidation (M))LYLPLIG_		AM(1)LYLPLIG		AM(60)LYLPLIG	0	0	1		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7873229980469	2	503.785721	1005.55689	2.9292	0.0014757	1.4403	0.00072561	4.3695	0.0022013	503.7859619344003	22.999	1.6624	22.999	21.555	23.218	0					55	33	2	0	0	0	0.21025	1	7246	7246		60.404	10.379	1	1288600			2313	2991	1443	1451	2330	2330		131			0.05433356862090477
AMMAIAIMK	9	Unmodified	_AMMAIAIMK_					0	0	0		ENST00000472442.2_1_19:1922970-1924280:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.26055908203125	2	490.260502	978.506451	0.76644	0.00037576	-0.94837	-0.00046495	-0.18193	-8.9192E-05	490.2602026498334	42.136	0.11643	42.136	42.065	42.181	0					5	3	2	0	0	0	0.49003	1	16808	16808		33.516	6.8227	1	85026			2314	7883	1444	1452	2331	2331					0.016337879410343703
AMPKFVEIAY	10	Unmodified	_AMPKFVEIAY_					0	0	0			REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF	REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	584.8032836914062	2	584.807185	1167.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.493	1	36.493	35.993	36.993	0								0	0	0	0.4162	1	12364	12364		25.574	1.0549	1		+		2315	14668	1445	1453	2332	2332					0.022721269194789784
AMQGDRLGI	9	Unmodified	_AMQGDRLGI_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7496032714844	2	480.750201	959.48585	0.92386	0.00044415	-2.2095	-0.0010622	-1.2857	-0.00061809	480.74927185191825	25.307	0.31859	25.307	25.196	25.514	0					11	6	2	0	0	0	0.23186	1	8857	8857		57.811	6.4758	1	482780			2316	3784	1446	1454	2333	2333					0.004486568772449573
AMRAARLPRYQ	11	Unmodified	_AMRAARLPRYQ_					0	0	0		B4GALNT4|p.L874M|1|0.2|ENSG00000182272|chr11:379997-379997|C/A|missense_variant	B4GALNT4|p.L874M|1|0.2|ENSG00000182272|chr11:379997-379997|C/A|missense_variant	B4GALNT4|p.L874M|1|0.2|ENSG00000182272|chr11:379997-379997|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	666.8706665039062	2	666.869505	1331.72446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.106	1	33.106	32.606	33.606	0								0	0	0	0.45614	1	11584	11584		24.519	1.9395	1				2317	271	1447	1455	2334	2334					0.07186437179370841
AMRPPFLRH	9	Unmodified	_AMRPPFLRH_					0	0	0			REV__ITGA10|p.P422Lfs*50|1|0.39|ENSG00000143127|chr1:145901906-145901906|G/-|frameshift_variant	REV__ITGA10|p.P422Lfs*50|1|0.39|ENSG00000143127|chr1:145901906-145901906|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.8117065429688	2	562.810928	1123.6073	-0.39359	-0.00022152	2.0442	0.0011505	1.6506	0.00092897	562.812117678734	14.668	0.10873	14.668	14.636	14.745	0					6	4	2	0	0	0	0.61124	1	3221	3221		12.207	1.3413	1	138870	+		2318	15168	1448	1456	2335	2335					0.05044324030450298
AMSAEERL	8	Unmodified	_AMSAEERL_					0	0	0		ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7191162109375	2	453.72111	905.427666	-2.6215	-0.0011894	-1.7674	-0.00080189	-4.3889	-0.0019913	453.7202252254188	24.249	0.2309	24.249	24.155	24.386	0					7	5	2	0	0	0	0.37378	1	7527	7527		73.975	2.679	1	258090			2319	4075	1449	1457	2336	2336					-0.02883024768038922
AMSARAEAI	9	Unmodified	_AMSARAEAI_					0	0	0		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2366943359375	2	460.236927	918.459301	0.085471	3.9337E-05	-0.66847	-0.00030766	-0.583	-0.00026832	460.236671610924	24.889	0.23726	24.889	24.795	25.032	0					14	7	3	0	0	0	0.18416	1	7411	7411		63.534	0.22758	1	860820			2320	5449	1450	1458	2337	2337					-0.0031903201407885717
AMSARAEAI	9	Unmodified	_AMSARAEAI_					0	0	0		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2366638183594	2	460.236927	918.459301	-0.055842	-2.5701E-05	-0.89472	-0.00041178	-0.95056	-0.00043748	460.2366239872075	25.004	0.2753	25.004	24.906	25.182	0					14	6	3	0	0	0	0.095583	1	7874	7874		80.455	0.74203	1	1055000			2321	5449	1450	1458	2338	2338					-0.0031903201407885717
AMSARAEAI	9	Unmodified	_AMSARAEAI_					0	0	0		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2366943359375	2	460.236927	918.459301	-0.45292	-0.00020845	-0.24033	-0.00011061	-0.69325	-0.00031906	460.2369453274037	25.068	0.56242	25.068	24.869	25.431	0					20	11	3	0	0	0	0.085655	1	8764	8764		82.75	5.9039	1	4541300			2322	5449	1450	1458	2339	2339					-0.0031903201407885717
AMSARAEAI	9	Oxidation (M)	_AM(Oxidation (M))SARAEAI_		AM(1)SARAEAI		AM(65)SARAEAI	0	0	1		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2344970703125	2	468.234384	934.454216	0.35115	0.00016442	-0.32781	-0.00015349	0.023336	1.0926E-05	468.234277803619	20.514	0.2397	20.514	20.402	20.642	0					9	5	2	0	0	0	0.16806	1	6360	6360		65.465	14.13	1	95014			2323	5449	1450	1459	2340	2340		218			-0.01563335876687688
AMSDEEHSYL	10	Unmodified	_AMSDEEHSYL_					0	0	0		tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.2440185546875	2	591.242603	1180.47065	1.5071	0.00089107	0.2502	0.00014793	1.7573	0.001039	591.2430476235	28.324	0.35909	28.324	28.173	28.532	0					27	7	5	0	0	0	0.4943	1	10374	10374		45.952	7.1458	1	1614800			2324	22670	1451	1460	2341	2341					-0.11236299501251779
AMSNIRDI	8	Unmodified	_AMSNIRDI_					0	0	0			REV__DAAM2|p.P525Lfs*11|1|0.48|ENSG00000146122|chr6:39879202-39879202|C/-|frameshift_variant	REV__DAAM2|p.P525Lfs*11|1|0.48|ENSG00000146122|chr6:39879202-39879202|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2366638183594	2	460.236927	918.459301	0.72244	0.00033249	-1.4417	-0.00066354	-0.71929	-0.00033104	460.2363938392364	25.147	0.56569	25.147	24.94	25.506	0					24	11	3	0	0	0	0.35045	1	8899	8899		76.774	8.2894	1	4150600	+		2325	12664	1452	1461	2342	2342					-0.0031903201407885717
AMTAARDRLL	10	Unmodified	_AMTAARDRLL_					0	0	0		ENST00000570221.5_1_15:30865009-30875097:+|nuORF;ENST00000397827.7_1_15:30672592-30685664:-|nuORF	ENST00000570221.5_1_15:30865009-30875097:+|nuORF	ENST00000570221.5_1_15:30865009-30875097:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.21014404296875	3	373.209731	1116.60736	0.84885	0.0003168	-0.051626	-1.9267E-05	0.79723	0.00029753	373.20972430201755	46.346	0.49753	46.346	46.037	46.535	0					43	28	2	0	0	0	0.68774	1	17793	17793		23.523	5.2606	1	61386			2326	9222	1453	1462	2343	2343					0.05372279239782074
AMTEFLEVS	9	Unmodified	_AMTEFLEVS_					0	0	0		ENST00000575246.6_1_17:4711576-4721404:+|nuORF;nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-3|PLD2;PLD2|p.R330Gfs*10|1|0.33|ENSG00000129219|chr17:4810926-4810926|C/-|frameshift_variant	ENST00000575246.6_1_17:4711576-4721404:+|nuORF	ENST00000575246.6_1_17:4711576-4721404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7462768554688	2	513.74425	1025.47395	3.1846	0.0016361	0.77685	0.0003991	3.9615	0.0020352	513.7445060406294	30.954	0.26143	30.954	30.848	31.11	0					10	5	3	0	0	0	0.26904	1	11529	11529		53.351	53.351	1	1146700			2327	3585	1454	1463	2344	2344					-0.037770046565810844
AMTGPPRVL	9	Unmodified	_AMTGPPRVL_					0	0	0			REV__CDHR5|p.G498Efs*13|1|0.36|ENSG00000099834|chr11:619066-619066|C/-|frameshift_variant	REV__CDHR5|p.G498Efs*13|1|0.36|ENSG00000099834|chr11:619066-619066|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2685546875	2	471.265487	940.516422	-0.60506	-0.00028515	1.9388	0.00091367	1.3337	0.00062852	471.2659077579885	28.516	0.93566	28.516	28.152	29.087	0					41	23	3	0	0	0	0.41113	1	10079	10079		40.778	7.2852	1	290220	+		2328	12403	1455	1464	2345	2345					0.04378435262299263
AMTSRTKE	8	Unmodified	_AMTSRTKE_					0	0	0			REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2340393066406	2	462.234384	922.454216	0.11134	5.1465E-05	-0.53016	-0.00024506	-0.41882	-0.00019359	462.2340755929644	20.037	0.10854	20.037	19.97	20.079	0					5	3	2	0	0	0	0.58686	1	5305	5305		51.193	5.2407	1	68692	+		2329	20415	1456	1465	2346	2346					-0.01011335876683006
AMTSRTKE	8	Unmodified	_AMTSRTKE_					0	0	0			REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2342224121094	2	462.234384	922.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.046	1	20.046	19.546	20.546	0								0	0	0	1.7419	1	5298	5298		66.429	7.6473	1		+		2330	20415	1456	1465	2347	2347					-0.01011335876683006
AMTSRTKE	8	Unmodified	_AMTSRTKE_					0	0	0			REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2342529296875	2	462.234384	922.454216	-0.72076	-0.00033316	0.50222	0.00023214	-0.21854	-0.00010102	462.2346025552175	20.381	0.15815	20.381	20.275	20.433	0					6	3	2	0	0	0	0.3049	1	6324	6324		82.241	13.454	1	395060	+		2331	20415	1456	1465	2348	2348					-0.01011335876683006
AMTSRTKE	8	Unmodified	_AMTSRTKE_					0	0	0			REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.23394775390625	2	462.234384	922.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.138	1	20.138	19.638	20.638	0								0	0	0	1.7419	1	5605	5605		67.494	3.2864	1		+		2332	20415	1456	1465	2349	2349					-0.01011335876683006
AMTSRTKE	8	Unmodified	_AMTSRTKE_					0	0	0			REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.234130859375	2	462.234384	922.454216	0.79955	0.00036958	-1.7058	-0.00078846	-0.9062	-0.00041888	462.2336903264957	20.285	0.16857	20.285	20.176	20.344	0					8	3	3	0	0	0	0.5535	1	6432	6432		54.776	7.119	1	1100900	+		2333	20415	1456	1465	2350	2350					-0.01011335876683006
AMTSRTKE	8	Unmodified	_AMTSRTKE_					0	0	0			REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.23419189453125	2	462.234384	922.454216	2.5676	0.0011868	-3.4396	-0.0015899	-0.87203	-0.00040308	462.23293466860946	20.268	0.26579	20.268	20.111	20.377	0					10	5	3	0	0	0	0.24383	1	6420	6420		112.41	16.596	1	1150000	+		2334	20415	1456	1465	2351	2351					-0.01011335876683006
AMVLQQNVL	9	Unmodified	_AMVLQQNVL_					0	0	0			REV__ENSG00000182568|ENST00000338745|SATB1	REV__ENSG00000182568|ENST00000338745|SATB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2827453613281	2	508.283877	1014.5532	-0.57143	-0.00029045	-2.6544	-0.0013492	-3.2258	-0.0016396	508.28288078796766	26.074	0.28671	26.074	25.93	26.216	0					21	9	3	0	0	0	0.19605	1	8150	8150		45.952	0	1	282270	+		2335	16889	1457	1466	2352	2352					0.04650687088201266
AMVQGGAIQ	9	Unmodified	_AMVQGGAIQ_					0	0	0			REV__ENSG00000120280|ENST00000378962|TASL	REV__ENSG00000120280|ENST00000378962|TASL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.72637939453125	2	437.726195	873.437837	-0.6231	-0.00027275	0.45087	0.00019736	-0.17223	-7.5389E-05	437.72650820907296	19.785	0.27144	19.785	19.617	19.889	0					9	6	2	0	0	0	0.071197	1	5434	5434		87.754	4.4671	1	93471	+		2336	14275	1458	1467	2353	2353					-0.003944170427871541
AMYTYFQAK	9	Unmodified	_AMYTYFQAK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.7674560546875	2	561.76806	1121.52157	0.4735	0.000266	-1.1393	-0.00064001	-0.66578	-0.00037401	561.7672350288601	36.427	0.12727	36.427	36.369	36.496	0					5	3	2	0	0	0	0.032052	1	13739	13739		107.01	43.701	1	439770			2337	2976	1459	1468	2354	2354					-0.03433305665748776
AMYTYFQAK	9	Unmodified	_AMYTYFQAK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7682495117188	2	561.76806	1121.52157	0.12846	7.2166E-05	0.13848	7.7793E-05	0.26694	0.00014996	561.7679928570365	36.223	0.16292	36.223	36.183	36.346	0					16	8	2	0	0	0	0.098791	1	12275	12275		79.713	40.46	1	151690			2338	2976	1459	1468	2355	2355					-0.03433305665748776
AMYTYFQAK	9	Unmodified	_AMYTYFQAK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7682495117188	2	561.76806	1121.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.413	1	36.413	35.913	36.913	0								0	0	0	0.0023244	1	14179	14179		118.74	41.969	1				2339	2976	1459	1468	2356	2356					-0.03433305665748776
AMYTYFQAK	9	Unmodified	_AMYTYFQAK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.767578125	2	561.76806	1121.52157	-0.93008	-0.00052249	1.1541	0.00064831	0.22398	0.00012583	561.7679753362054	36.22	0.098991	36.22	36.152	36.251	0					5	3	2	0	0	0	0.24095	1	12952	12952		56.721	21.569	1	115890			2340	2976	1459	1468	2357	2357					-0.03433305665748776
AMYTYFQAK	9	Unmodified	_AMYTYFQAK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.76806640625	2	561.76806	1121.52157	3.4707	0.0019497	-3.05	-0.0017134	0.42072	0.00023635	561.7656791647769	36.387	0.31614	36.387	36.297	36.613	0					17	6	5	0	0	0	0.01873	1	14133	14133		124.08	58.615	1	1003900			2341	2976	1459	1468	2358	2358					-0.03433305665748776
ANAALRRR	8	Unmodified	_ANAALRRR_					0	0	0			REV__ENSG00000179774|ENST00000373673|ATOH7	REV__ENSG00000179774|ENST00000373673|ATOH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2845153808594	2	464.283392	926.552231	-0.72968	-0.00033878	2.4092	0.0011186	1.6796	0.00077979	464.2844756838415	39.39	0.16503	39.39	39.294	39.459	0					12	9	2	0	0	0	0.7126	1	13237	13237		31.955	0.42505	1	131380	+		2342	16788	1460	1469	2359	2359					0.08601653554171662
ANAFVRRP	8	Unmodified	_ANAFVRRP_					0	0	0			REV__nc|ENSG00000156475|Q00005-3|PPP2R2B	REV__nc|ENSG00000156475|Q00005-3|PPP2R2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7666015625	2	465.767043	929.519533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.933	1	22.933	22.433	23.433	0								0	0	0	1.7419	1	6563	6563		31.955	1.4512	1		+		2343	21075	1461	1470	2360	2360					0.05195446431332584
ANANKAQAA	9	Unmodified	_ANANKAQAA_					0	0	0		nc|ENSG00000158423|Q8N443-3|RIBC1;ENSG00000158423|ENST00000375327|RIBC1	nc|ENSG00000158423|Q8N443-3|RIBC1	nc|ENSG00000158423|Q8N443-3|RIBC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7268371582031	2	429.725041	857.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.057	1	26.057	25.557	26.557	0								0	0	0	0.35899	1	8334	8334		23.042	2.5607	1				2344	5262	1462	1471	2361	2361					0.0011087054375593652
ANARGELNLT	10	Unmodified	_ANARGELNLT_					0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2830200195312	2	529.783087	1057.55162	0.028694	1.5202E-05	0.6467	0.00034261	0.67539	0.00035781	529.7833975346886	16.65	0.24144	16.65	16.509	16.751	0					18	8	3	0	0	0	0.21754	1	4017	4017		77.318	7.69	1	243860	+		2345	13885	1463	1472	2362	2362					0.025147693238068314
ANAVNEGTYT	10	Unmodified	_ANAVNEGTYT_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2386474609375	2	520.238178	1038.4618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.306	1	28.306	27.806	28.806	0								0	0	0	0.36846	1	9988	9988		40.058	2.8991	1				2346	7320	1464	1473	2363	2363					-0.055889050754103664
ANCHLIRSYQ	10	Unmodified	_ANCHLIRSYQ_					0	0	0		ENST00000392861.6_1_2:145274916-145275705:-|nuORF;ENST00000435831.5_1_2:145274916-145275300:-|nuORF	ENST00000392861.6_1_2:145274916-145275705:-|nuORF	ENST00000392861.6_1_2:145274916-145275705:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.5357360839844	3	402.201235	1203.58188	0.66659	0.0002681	-1.312	-0.00052769	-0.64543	-0.00025959	402.20075751737966	22.188	0.4126	22.188	22.089	22.501	0					16	9	3	0	0	0	0.60076	1	7159	7159		38.754	5.9412	1	615880			2347	9150	1465	1474	2364	2364					-0.011771952826393317
ANDIQLVANA	10	Unmodified	_ANDIQLVANA_					0	0	0			REV__ENSG00000204897|ENST00000312150|KRT25	REV__ENSG00000204897|ENST00000312150|KRT25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7720947265625	2	514.772188	1027.52982	1.2858	0.0006619	-0.52984	-0.00027274	0.75598	0.00038916	514.7718071237853	26.822	0.41803	26.822	26.658	27.076	0					36	14	4	0	0	0	0.46128	1	8164	8164		49.536	10.782	1	1224600	+	+	2348	12614	1466	1475	2365	2365					0.01715964575214457
ANDIQLVANA	10	Unmodified	_ANDIQLVANA_					0	0	0			REV__ENSG00000204897|ENST00000312150|KRT25	REV__ENSG00000204897|ENST00000312150|KRT25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7721557617188	2	514.772188	1027.52982	1.1762	0.00060547	-0.91529	-0.00047117	0.26089	0.0001343	514.7717571026035	27.09	0.58579	27.09	26.886	27.472	0					61	14	7	0	0	0	0.38194	1	9379	9379		58.23	10.573	1	8795400	+	+	2349	12614	1466	1475	2366	2366					0.01715964575214457
ANDIQLVANA	10	Unmodified	_ANDIQLVANA_					0	0	0			REV__ENSG00000204897|ENST00000312150|KRT25	REV__ENSG00000204897|ENST00000312150|KRT25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7722778320312	2	514.772188	1027.52982	0.13812	7.1102E-05	0.47913	0.00024664	0.61725	0.00031775	514.7724356966045	27.062	0.57237	27.062	26.852	27.424	0					27	11	4	0	0	0	0.4758	1	9583	9583		47.96	5.0953	1	3638900	+	+	2350	12614	1466	1475	2367	2367					0.01715964575214457
ANDIQLVANA	10	Unmodified	_ANDIQLVANA_					0	0	0			REV__ENSG00000204897|ENST00000312150|KRT25	REV__ENSG00000204897|ENST00000312150|KRT25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7724609375	2	514.772188	1027.52982	1.4887	0.00076634	-1.096	-0.00056421	0.39266	0.00020213	514.7716038775212	27.044	0.62226	27.044	26.836	27.459	0					46	12	6	0	0	0	0.2538	1	9594	9594		72.879	16.158	1	13198000	+	+	2351	12614	1466	1475	2368	2368					0.01715964575214457
ANDKKGFWN	9	Unmodified	_ANDKKGFWN_					0	0	0			REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1	REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2672729492188	2	540.267073	1078.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.899	1	34.899	34.399	35.399	0								0	0	0	0.30504	1	13423	13423		34.173	2.6427	1		+		2352	22214	1467	1476	2369	2369					-0.016525983593282945
ANDVDFHSF	9	Unmodified	_ANDVDFHSF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2268676757812	2	526.227613	1050.44067	0.62092	0.00032674	-3.9691	-0.0020886	-3.3482	-0.0017619	526.2261902073084	16.495	0.34315	16.495	16.376	16.719	0					27	11	4	0	0	0	0.2873	1	3747	3747		51.335	13.524	1	2072900			2353	2611	1468	1477	2370	2370					-0.08252870384285416
ANEQKVTEMK	10	Unmodified	_ANEQKVTEMK_					0	0	0			REV__NIN|p.T1558M|1|0.3|ENSG00000100503|chr14:50754624-50754624|G/A|missense_variant	REV__NIN|p.T1558M|1|0.3|ENSG00000100503|chr14:50754624-50754624|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.298095703125	2	589.297713	1176.58087	0.52779	0.00031103	-0.74469	-0.00043885	-0.2169	-0.00012782	589.2975623191344	28.949	0.6791	28.949	28.793	29.472	0					42	17	3	0	0	0	0.65051	1	9833	9833		28.081	7.1346	1	204880	+		2354	21288	1469	1478	2371	2371					-0.0003545444224073435
ANFLVVTGK	9	Unmodified	_ANFLVVTGK_					0	0	0			REV__ENSG00000119227|ENST00000412723|PIGZ	REV__ENSG00000119227|ENST00000412723|PIGZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.77911376953125	2	474.779285	947.544017	0.71839	0.00034107	-1.4191	-0.00067375	-0.7007	-0.00033268	474.7788256355099	37.895	0.29947	37.895	37.739	38.039	0					15	6	4	0	0	0	0.19605	1	14845	14845		62.107	4.2961	1	550970	+		2355	14236	1470	1479	2372	2372					0.06814661794192034
ANFQYMKEI	9	Unmodified	_ANFQYMKEI_					0	0	0			REV__ENSG00000254685|ENST00000370898|FPGT	REV__ENSG00000254685|ENST00000370898|FPGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.2800903320312	2	572.278792	1142.54303	-0.079876	-4.5712E-05	1.2385	0.00070875	1.1586	0.00066304	572.279110474604	43.699	0.12105	43.699	43.641	43.762	0					10	6	2	0	0	0	0.19605	1	16463	16463		62.107	25.079	1	37164	+		2356	17748	1471	1480	2373	2373					-0.02253920637031115
ANGILKVPA	9	Unmodified	_ANGILKVPA_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.7735290527344	2	441.774003	881.533452	-2.95	-0.0013032	2.3449	0.0010359	-0.60507	-0.00026731	441.7749624531438	26.039	0.18104	26.039	25.984	26.165	0					5	4	2	0	0	0	0.47038	1	8331	8331		35.618	1.4457	1	84848			2357	2123	1472	1481	2374	2374					0.08794679139748496
ANGLQKNAKV	10	Unmodified	_ANGLQKNAKV_					0	0	0		UNC13C|p.S349Qfs*15|1|0.17|ENSG00000137766|chr15:54013944-54013944|T/-|frameshift_variant;UNC13C|p.F542Sfs*65|1|0.06|ENSG00000137766|chr15:54014523-54014523|T/-|frameshift_variant;UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant;UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant;UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C	UNC13C|p.S349Qfs*15|1|0.17|ENSG00000137766|chr15:54013944-54013944|T/-|frameshift_variant	UNC13C|p.S349Qfs*15|1|0.17|ENSG00000137766|chr15:54013944-54013944|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.2049865722656	3	348.204974	1041.59309	-0.8019	-0.00027923	0.67837	0.00023621	-0.12353	-4.3013E-05	348.20517840759834	20.061	0.089151	20.061	20.004	20.093	0					7	3	3	0	0	0	0.70877	1	5545	5545		20.03	20.03	1	136470			2358	4192	1473	1482	2375	2375					0.073959500831279
ANGPVEFTI	9	Unmodified	_ANGPVEFTI_					0	0	0			REV__ENST00000468417.1_1_2:114239754-114251622:+|nuORF	REV__ENST00000468417.1_1_2:114239754-114251622:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.246826171875	2	474.245275	946.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.445	1	31.445	30.945	31.945	0								0	0	0	0.13137	1	10827	10827		64.207	3.2353	1		+		2359	14872	1474	1483	2376	2376					0.0006179214353778661
ANHDLLIKV	9	Unmodified	_ANHDLLIKV_					0	0	0			REV__nc|ENSG00000183475|Q9H672-2|ASB7	REV__nc|ENSG00000183475|Q9H672-2|ASB7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.5378112792969	3	341.537953	1021.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.833	1	26.833	26.333	27.333	0								0	0	0	0.31222	1	9652	9652		32.751	4.669	1		+		2360	16936	1475	1484	2377	2377					0.08209735714251565
ANKKPMQL	8	Unmodified	_ANKKPMQL_					0	0	0		nc|ENSG00000155111|Q9BWU1-2|CDK19;ENSG00000155111|ENST00000368911|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.26348876953125	2	465.265487	928.516422	-2.3089	-0.0010743	2.6116	0.0012151	0.30266	0.00014082	465.2667043789503	29.76	0.70235	29.76	29.443	30.145	0					46	18	3	0	0	0	0.64096	1	9953	9953		42.474	0.078325	1	608890			2361	5118	1476	1485	2378	2378					0.04930435262303945
ANLQILVMGAP	11	Unmodified	_ANLQILVMGAP_					0	0	0			REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3178100585938	2	563.818084	1125.62162	0.11504	6.4864E-05	-2.449	-0.0013808	-2.334	-0.0013159	563.8169442700976	39.031	0.24832	39.031	38.907	39.156	0					12	8	2	0	0	0	0.5473	1	15335	15335		40.778	14.085	1	39157	+		2362	17696	1477	1486	2379	2379					0.0638293166805397
ANMKSNPAIQ	10	Unmodified	_ANMKSNPAIQ_					0	0	0		ENST00000478827.1_1_13:41367302-41376286:+|nuORF	ENST00000478827.1_1_13:41367302-41376286:+|nuORF	ENST00000478827.1_1_13:41367302-41376286:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2764282226562	2	537.274041	1072.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.017	1	43.017	42.517	43.517	0								0	0	0	0.3598	1	16260	16260		15.642	0	1				2363	9937	1478	1487	2380	2380					0.00016311077433783794
ANNGSPCPEL	10	Unmodified	_ANNGSPCPEL_					0	0	0		ENSG00000159674|ENST00000290902|SPON2	ENSG00000159674|ENST00000290902|SPON2	ENSG00000159674|ENST00000290902|SPON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.22125244140625	2	501.221474	1000.42839	-0.97142	-0.0004869	1.0747	0.00053866	0.10328	5.1767E-05	501.22205968749563	27.415	0.14633	27.415	27.327	27.474	0					9	5	2	0	0	0	0.44601	1	8727	8727		51.193	5.2204	1	114740			2364	5325	1479	1488	2381	2381					-0.07180230118990494
ANNQQKTNK	9	Unmodified	_ANNQQKTNK_					0	0	0			REV__nc|ENSG00000112782|Q9NZA1|CLIC5	REV__nc|ENSG00000112782|Q9NZA1|CLIC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7832641601562	2	523.272887	1044.53122	1.7925	0.00093795	1.1627	0.00060841	2.9552	0.0015464	523.2734833271646	36.247	0.72451	36.247	36.052	36.777	0					105	21	7	0	0	0	0.39215	1	14278	14278		42.396	13.247	1	48823000	+		2365	20978	1480	1489	2382	2382					0.010735986639929251
ANPGRHRK	8	Unmodified	_ANPGRHRK_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3;NCAPD3|p.A322Lfs*24|1|0.31|ENSG00000151503|chr11:134206654-134206654|G/-|frameshift_variant;NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.26873779296875	2	468.267742	934.52093	2.6142	0.0012241	-0.46103	-0.00021588	2.1532	0.0010083	468.2675217331488	32.776	0.45652	32.776	32.59	33.046	0					22	9	3	0	0	0	0.66372	1	12363	12363		38.806	38.806	1	3111000			2366	4972	1481	1490	2383	2383					0.051050805200816285
ANPLGLKNN	9	Unmodified	_ANPLGLKNN_					0	0	0		ENST00000560937.1_1_15:89442628-89444976:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant;ENSG00000140545|ENST00000268150|MFGE8	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.76605224609375	2	470.764166	939.513779	2.5147	0.0011838	0.82452	0.00038816	3.3392	0.001572	470.7645124611515	39.281	0.55986	39.281	38.953	39.513	0					20	12	2	0	0	0	0.51817	1	15482	15482		30.504	0.6621	1	561990			2367	4395	1482	1491	2384	2384					0.04160303128992382
ANQAAAGRRL	10	Unmodified	_ANQAAAGRRL_					0	0	0			REV__ENST00000464413.1_1_2:99426225-99438629:-|nuORF	REV__ENST00000464413.1_1_2:99426225-99438629:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.197998046875	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.468	1	49.468	48.968	49.968	0								0	0	0	0.4044	1	19562	19562		29.17	0	1		+		2368	19402	1483	1492	2385	2385					0.056053150004117924
ANRPDASSL	9	Unmodified	_ANRPDASSL_					0	0	0		ENST00000323460.9_1_3:196594808-196612056:+|nuORF	ENST00000323460.9_1_3:196594808-196612056:+|nuORF	ENST00000323460.9_1_3:196594808-196612056:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7373352050781	2	465.735606	929.456658	2.6248	0.0012225	1.2057	0.00056155	3.8306	0.001784	465.7360338009871	27.846	0.31476	27.846	27.628	27.943	0					19	6	4	0	0	0	0.21263	1	10025	10025		60.118	8.9256	1	813110			2369	8630	1484	1493	2386	2386					-0.010891641473904201
ANSEVCLPNEL	11	Unmodified	_ANSEVCLPNEL_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-4|WNK3	REV__nc|ENSG00000196632|Q9BYP7-4|WNK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.780517578125	2	594.781896	1187.54924	-1.8121	-0.0010778	-0.75356	-0.00044821	-2.5657	-0.001526	594.7815410044633	24.666	0.23481	24.666	24.579	24.814	0					13	5	4	0	0	0	0.51875	1	7724	7724		42.864	0.46813	1	220100	+		2370	17276	1485	1494	2387	2387					-0.0370344719615332
ANSHIIVIK	9	Unmodified	_ANSHIIVIK_					0	0	0			REV__tr|U7SU23|U7SU23_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00989PE=4SV=1	REV__tr|U7SU23|U7SU23_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00989PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.2062683105469	3	332.206315	993.597115	0.52254	0.00017359	-0.46	-0.00015282	0.062535	2.0775E-05	332.2061183749212	23.957	0.41174	23.957	23.678	24.09	0					14	9	3	0	0	0	0.25761	1	8011	8011		54.722	0	1	857600	+		2371	21954	1486	1495	2388	2388					0.1000603957684234
ANSHYFAL	8	Unmodified	_ANSHYFAL_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;MAN2A2|p.V832Rfs*6|1|0.43|ENSG00000196547|chr15:90912894-90912895|-/C|frameshift_variant;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000558640.5_1_15:91449600-91450513:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7240905761719	2	461.72451	921.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.929	1	28.929	28.429	29.429	0								0	0	0	1.7419	1	9081	9081		37.159	1.9584	1				2372	7378	1487	1496	2389	2389					-0.029393438251531734
ANSIKFSVWVS	11	Unmodified	_ANSIKFSVWVS_					0	0	0		KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant;KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.K592Rfs*4|1|0.37|ENSG00000138182|chr10:89724010-89724010|A/-|frameshift_variant;KIF20B|p.N445*|1|0.1|ENSG00000138182|chr10:89718763-89718764|-/T|frameshift_variant;KIF20B|p.F444Lfs*9|1|0.09|ENSG00000138182|chr10:89718764-89718764|T/-|frameshift_variant	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	619.3294067382812	2	619.332413	1236.65027	-2.0605	-0.0012761	-1.4359	-0.00088932	-3.4964	-0.0021654	619.3314442074601	34.195	0.16056	34.195	34.12	34.281	0					9	5	2	0	0	0	0.64626	1	12089	12089		32.751	0	1	70918			2373	4237	1488	1497	2390	2390					0.041413725688244085
ANSLPHFK	8	Unmodified	_ANSLPHFK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.248046875	2	457.248152	912.481751	-0.62327	-0.00028499	0.23847	0.00010904	-0.3848	-0.00017595	457.2482917430635	25.282	0.17004	25.282	25.222	25.392	0					8	3	3	0	0	0	0.66372	1	8969	8969		38.806	8.3025	1	427750			2374	1272	1489	1498	2391	2391					0.022009354458418784
ANSPVAKDL	9	Unmodified	_ANSPVAKDL_					0	0	0			REV__PRPF40B|p.R310L|1|0.47|ENSG00000110844|chr12:49634596-49634596|G/T|missense_variant	REV__PRPF40B|p.R310L|1|0.47|ENSG00000110844|chr12:49634596-49634596|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7500305175781	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.133	1	23.133	22.633	23.633	0								0	0	0	0.28666	1	7616	7616		37.812	3.639	1		+		2375	21417	1490	1499	2392	2392					0.026691945178072274
ANSTAIIKQ	9	Unmodified	_ANSTAIIKQ_					0	0	0			REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2713317871094	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.451	1	11.451	10.951	11.951	0								0	0	0	0.31838	1	2346	2346		31.53	4.8369	1		+		2376	21684	1491	1500	2393	2393					0.05461169926184084
ANTDVFLSK	9	Unmodified	_ANTDVFLSK_					0	0	0		nc|ENSG00000122378|Q9BRX8-2|PRXL2A;ENSG00000122378|ENST00000606162|PRXL2A	nc|ENSG00000122378|Q9BRX8-2|PRXL2A	nc|ENSG00000122378|Q9BRX8-2|PRXL2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.76361083984375	2	497.763832	993.513111	0.1798	8.9498E-05	-0.42587	-0.00021198	-0.24607	-0.00012248	497.7635363109997	23.851	0.22215	23.851	23.747	23.969	0					8	5	2	0	0	0	0.4966	1	7360	7360		32.812	4.9302	1	97204			2377	3262	1492	1501	2394	2394					0.016094636892944436
ANTFQRLKT	9	Unmodified	_ANTFQRLKT_					0	0	0			REV__ENSG00000132613|ENST00000338779|MTSS2	REV__ENSG00000132613|ENST00000338779|MTSS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8056640625	2	539.803823	1077.59309	3.4526	0.0018637	0.62889	0.00033948	4.0815	0.0022032	539.8039449549991	29.921	0.41669	29.921	29.715	30.131	0					21	8	4	0	0	0	0.26904	1	11006	11006		53.351	0	1	641290	+		2378	14669	1493	1502	2395	2395					0.0573995008314796
ANTLGYSD	8	Unmodified	_ANTLGYSD_					0	0	0		SCN9A|p.V1720Sfs*8|1|0.13|ENSG00000169432|chr2:166199481-166199482|-/T|frameshift_variant;SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	SCN9A|p.V1720Sfs*8|1|0.13|ENSG00000169432|chr2:166199481-166199482|-/T|frameshift_variant	SCN9A|p.V1720Sfs*8|1|0.13|ENSG00000169432|chr2:166199481-166199482|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.6904602050781	2	420.690333	839.366112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.47	1	23.47	22.97	23.97	0								0	0	0	1.7419	1	6800	6800		27.882	1.1893	1				2379	6164	1494	1503	2396	2396					-0.0599963319566541
ANVKNIGAL	9	Unmodified	_ANVKNIGAL_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2686767578125	2	450.269084	898.523616	-0.30604	-0.0001378	-0.58404	-0.00026298	-0.89008	-0.00040078	450.26886659341903	39.297	0.20874	39.297	39.263	39.472	0					16	12	3	0	0	0	0.49003	1	12770	12770		33.516	1.5607	1	130090			2380	11759	1495	1504	2397	2397					0.07029491134380805
ANVPIVNH	8	Unmodified	_ANVPIVNH_					0	0	0			REV__ENST00000390667.9_1_13:73309108-73317683:+|nuORF	REV__ENST00000390667.9_1_13:73309108-73317683:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2402038574219	2	432.240327	862.466101	0.74526	0.00032213	-0.89121	-0.00038522	-0.14594	-6.3082E-05	432.23995024513346	20.201	0.6663	20.201	19.869	20.535	0					21	14	2	0	0	0	0.75243	1	6218	6218		26.796	0.10319	1	303500	+		2381	18812	1496	1505	2398	2398					0.02936648928800878
ANVVKVAS	8	Unmodified	_ANVVKVAS_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.2370300292969	2	394.237253	786.459953	-0.2064	-8.1372E-05	0.19445	7.6661E-05	-0.01195	-4.7111E-06	394.2373560424894	32.941	0.47338	32.941	32.611	33.084	0					22	12	2	0	0	0	0.61938	1	12057	12057		45.952	7.1458	1	473670	+		2382	16559	1497	1506	2399	2399					0.05818130697275592
APAAASSLGP	10	Unmodified	_APAAASSLGP_					0	0	0		ENST00000416512.1_1_1:32827557-32827692:-|nuORF;ENSG00000225828|ENST00000432622|FAM229A	ENST00000416512.1_1_1:32827557-32827692:-|nuORF	ENST00000416512.1_1_1:32827557-32827692:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2246398925781	2	421.224342	840.434132	0.41011	0.00017275	0.028579	1.2038E-05	0.43869	0.00018479	421.2243135207876	20.362	0.36662	20.362	20.134	20.5	0					19	12	2	0	0	0	0.65213	1	5380	5380		27.882	6.9353	1	58308			2383	7872	1498	1507	2400	2400					0.007532364550115744
APACAAGL	8	Unmodified	_APACAAGL_					0	0	0			REV__ENST00000370200.5_1_10:102822312-102822666:+|nuORF	REV__ENST00000370200.5_1_10:102822312-102822666:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	337.16949462890625	2	337.170524	672.326496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.757	1	45.757	45.257	46.257	0								0	0	0	1.7419	1	16997	16997		16.705	6.5202	1		+		2384	18632	1499	1508	2401	2401					-0.022774316800678207
APAHSRVAGE	10	Unmodified	_APAHSRVAGE_					0	0	0			REV__ENST00000505113.5_1_5:424040-432966:+|nuORF	REV__ENST00000505113.5_1_5:424040-432966:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7587890625	2	497.756872	993.499192	2.9142	0.0014506	1.1285	0.00056171	4.0427	0.0020123	497.75732920299816	27.838	0.76538	27.838	27.678	28.443	0					37	15	4	0	0	0	0.41335	1	9998	9998		54.776	0.01164	1	2455700	+		2385	18307	1500	1509	2402	2402					0.002182309808631544
APALLATQ	8	Unmodified	_APALLATQ_					0	0	0		nc|ENSG00000249158|Q9Y5I1-2|PCDHA11;ENSG00000249158|ENST00000398640|PCDHA11	nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.731689453125	2	392.731803	783.449054	0.45094	0.0001771	-0.51322	-0.00020156	-0.062285	-2.4461E-05	392.7315755620153	19.696	0.6677	19.696	19.276	19.944	0					36	13	3	0	0	0	0.44433	1	6092	6092		65.803	0	1	948580			2386	7981	1501	1510	2403	2403					0.048667283229860914
APALPPSAPPK	11	Unmodified	_APALPPSAPPK_					0	0	0		PHACTR2|p.N196Kfs*7|1|0.25|ENSG00000112419|chr6:143760558-143760559|-/A|frameshift_variant;PHACTR2|p.T229Qfs*47|1|0.32|ENSG00000112419|chr6:143765277-143765277|A/-|frameshift_variant;PHACTR2|p.N196Ifs*80|2|0.28|ENSG00000112419|chr6:143760559-143760559|A/-|frameshift_variant;PHACTR2|p.L340Sfs*4|2|0.36|ENSG00000112419|chr6:143765608-143765609|-/C|frameshift_variant;PHACTR2|p.P339Lfs*30|1|0.33|ENSG00000112419|chr6:143765609-143765609|C/-|frameshift_variant;ENSG00000112419|ENST00000440869|PHACTR2;nc|ENSG00000112419|O75167|PHACTR2	PHACTR2|p.N196Kfs*7|1|0.25|ENSG00000112419|chr6:143760558-143760559|-/A|frameshift_variant	PHACTR2|p.N196Kfs*7|1|0.25|ENSG00000112419|chr6:143760558-143760559|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3043212890625	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.687	1	50.687	50.187	51.187	0								0	0	0	0.45674	1	15218	15218		19.104	0	1				2387	2743	1502	1511	2404	2404					0.0762661985700106
APAPANINQK	10	Unmodified	_APAPANINQK_					0	0	0			REV__ENSG00000100249|ENST00000216071|C22orf31	REV__ENSG00000100249|ENST00000216071|C22orf31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.281982421875	2	512.282723	1022.55089	1.2525	0.00064163	-3.3847	-0.0017339	-2.1322	-0.0010923	512.2809162625243	15.475	0.21183	15.475	15.322	15.534	0					9	4	4	0	0	0	0.46215	1	4248	4248		49.442	5.3247	1	1866700	+		2388	13526	1503	1512	2405	2405					0.0405197467475773
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant	HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.75927734375	2	497.758884	993.503215	-0.27791	-0.00013833	0.86012	0.00042813	0.58221	0.0002898	497.7589865849999	27.925	0.71012	27.925	27.736	28.447	0					44	17	4	0	0	0	0.023949	1	9798	9798		115.46	58.006	1	729690			2389	1252	1504	1513	2406	2406					0.006203204745702351
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant	HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7586364746094	2	497.758884	993.503215	-1.125	-0.00056	0.65756	0.00032731	-0.46748	-0.00023269	497.7592371763508	27.679	0.44337	27.679	27.523	27.966	0					38	15	3	0	0	0	0.32741	1	8800	8800		47.916	18.766	1	520000			2390	1252	1504	1513	2407	2407					0.006203204745702351
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant	HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.75970458984375	2	497.758884	993.503215	0.17927	8.9231E-05	-0.32364	-0.00016109	-0.14437	-7.1862E-05	497.7587762126811	27.743	0.34733	27.743	27.576	27.923	0					19	8	3	0	0	0	0.16524	1	9089	9089		65.803	14.468	1	205530			2391	1252	1504	1513	2408	2408					0.006203204745702351
APAPPASQY	9	Unmodified	_APAPPASQY_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2244567871094	2	451.224342	900.434132	-0.10761	-4.8558E-05	-0.47439	-0.00021405	-0.582	-0.00026261	451.2240858053458	27.276	0.61171	27.276	27.118	27.73	0					22	12	3	0	0	0	0.03984	1	9853	9853		99.375	46.024	1	194420			2392	11427	1505	1514	2409	2409					-0.020067635450004673
APAPPASQY	9	Unmodified	_APAPPASQY_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7259521484375	2	451.224342	900.434132	-0.13527	-6.1037E-05	0.048613	2.1935E-05	-0.086658	-3.9102E-05	451.2244386325635	27.156	0.33052	27.156	26.976	27.306	0					13	8	2	0	0	0	0.47038	1	8848	8848		35.618	7.736	1	63472			2393	11427	1505	1514	2410	2410					-0.020067635450004673
APAPPASQY	9	Unmodified	_APAPPASQY_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.223876953125	2	451.224342	900.434132	-0.40594	-0.00018317	-0.38158	-0.00017218	-0.78752	-0.00035535	451.2241550772676	27.264	0.57512	27.264	27.002	27.577	0					24	11	3	0	0	0	0.03984	1	9703	9703		99.375	27.997	1	354250			2394	11427	1505	1514	2411	2411					-0.020067635450004673
APAPPASQY	9	Unmodified	_APAPPASQY_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2241516113281	2	451.224342	900.434132	0.87637	0.00039544	-1.1561	-0.00052164	-0.27969	-0.0001262	451.2238005176081	27.303	0.67543	27.303	26.936	27.611	0					29	13	3	0	0	0	0.03984	1	9745	9745		99.375	53.423	1	339540			2395	11427	1505	1514	2412	2412					-0.020067635450004673
APAPPTPAPTA	11	Unmodified	_APAPPTPAPTA_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7665100097656	2	495.766374	989.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.152	1	29.152	28.652	29.652	0								0	0	0	0.45144	1	9172	9172		25.574	2.5316	1				2396	4009	1506	1515	2413	2413					0.023017675518985925
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7408142089844	2	463.74016	925.465767	0.098136	4.551E-05	-0.2113	-9.7987E-05	-0.11316	-5.2477E-05	463.74018879062004	30.871	0.35248	30.871	30.725	31.077	0					24	14	2	0	0	0	0.16524	1	9858	9858		65.803	19.851	1	77506			2397	5116	1507	1516	2414	2414					5.229208954915521E-05
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.740478515625	2	463.74016	925.465767	-0.14949	-6.9323E-05	0.73779	0.00034214	0.58831	0.00027282	463.7404117849836	30.966	0.28971	30.966	30.805	31.095	0					9	7	2	0	0	0	0.39123	1	10598	10598		42.474	8.9589	1	50513			2398	5116	1507	1516	2415	2415					5.229208954915521E-05
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.73895263671875	2	463.74016	925.465767	-0.39317	-0.00018233	-2.2201	-0.0010296	-2.6133	-0.0012119	463.73895297993624	30.914	0.38131	30.914	30.764	31.145	0					22	10	4	0	0	0	0.14734	1	10558	10558		68.485	24.368	1	170680			2399	5116	1507	1516	2416	2416					5.229208954915521E-05
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7401123046875	2	463.74016	925.465767	-0.48033	-0.00022275	0.054217	2.5143E-05	-0.42611	-0.0001976	463.7401959571053	31.087	0.50438	31.087	30.881	31.386	0					27	10	4	0	0	0	0.16524	1	11571	11571		65.803	17.888	1	383540			2400	5116	1507	1516	2417	2417					5.229208954915521E-05
APAPTREAN	9	Unmodified	_APAPTREAN_					0	0	0		ENST00000578402.5_2_17:61777915-61777969:-|nuORF	ENST00000578402.5_2_17:61777915-61777969:-|nuORF	ENST00000578402.5_2_17:61777915-61777969:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7383728027344	2	463.738148	925.461744	0.7399	0.00034312	0.88601	0.00041087	1.6259	0.00075399	463.73856271864497	31.112	0.50674	31.112	30.913	31.42	0					31	10	4	0	0	0	0.25716	1	11611	11611		54.776	6.8607	1	883380			2401	10851	1508	1517	2418	2418					-0.003968602847749025
APARPLRW	8	Unmodified	_APARPLRW_					0	0	0			REV__RHPN1|p.V681Sfs*93|1|0.37|ENSG00000158106|chr8:143382598-143382599|-/C|frameshift_variant	REV__RHPN1|p.V681Sfs*93|1|0.37|ENSG00000158106|chr8:143382598-143382599|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.85858154296875	3	322.859249	965.555919	-0.70257	-0.00022683	-1.4695	-0.00047445	-2.1721	-0.00070128	322.8587544087735	20.285	0.093731	20.285	20.232	20.326	0					5	3	2	0	0	0	0.74117	1	5644	5644		30.504	6.9809	1	126850	+		2402	21464	1509	1518	2419	2419					0.07176323328030776
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7742004394531	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.006	1	35.006	34.506	35.506	0								0	0	0	0.13137	1	13091	13091		38.806	0	1				2403	1545;6995	1510	1519	2420	2420					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7733154296875	2	502.7742	1003.53385	0.98934	0.00049741	-1.1373	-0.00057179	-0.14793	-7.4376E-05	502.7736282412092	35.056	0.8168	35.056	34.727	35.544	0					60	23	4	0	0	0	0.35021	1	13494	13494		38.806	13.232	1	3340500			2404	1545;6995	1510	1519	2421	2421					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7740173339844	2	502.7742	1003.53385	0.13355	6.7144E-05	-0.13437	-6.756E-05	-0.0008274	-4.16E-07	502.77410741128347	34.792	0.48316	34.792	34.609	35.092	0					38	16	3	0	0	0	0.24095	1	12311	12311		31.955	2.8053	1	479400			2405	1545;6995	1510	1519	2422	2422					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7740478515625	2	502.7742	1003.53385	1.1618	0.00058414	-1.263	-0.000635	-0.10117	-5.0865E-05	502.7735301162735	35.002	0.91935	35.002	34.717	35.637	0					45	18	4	0	0	0	0.0062933	1	13443	13443		123.99	71.69	1	3613000			2406	1545;6995	1510	1519	2423	2423					0.032220540689422705
APEFVQAL	8	Unmodified	_APEFVQAL_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7369384765625	2	437.737086	873.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.503	1	39.503	39.003	40.003	0								0	0	0	1.7419	1	15617	15617		79.939	8.5613	1				2407	2788	1511	1520	2424	2424					0.01782710977431634
APEMPASQS	9	Unmodified	_APEMPASQS_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.20440673828125	2	459.205292	916.396032	-2.2208	-0.0010198	-0.39143	-0.00017975	-2.6122	-0.0011995	459.20515032859436	49.519	0.22852	49.519	49.447	49.676	0					22	13	2	0	0	0	0.59802	1	16328	16328		21.96	1.013	1	552980			2408	1911	1512	1521	2425	2425					-0.06551017521974245
APEPSAAAGR	10	Unmodified	_APEPSAAAGR_					0	0	0			REV__ENSG00000182534|ENST00000449428|MXRA7	REV__ENSG00000182534|ENST00000449428|MXRA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7391052246094	2	463.738148	925.461744	0.7399	0.00034312	0.88601	0.00041087	1.6259	0.00075399	463.73856271864497	31.112	0.50674	31.112	30.913	31.42	0					31	10	4	0	0	0	0.44601	1	11586	11586		51.193	1.6567	1	883380	+		2409	16887	1513	1522	2426	2426					-0.003968602847749025
APFEQAGQKY	10	Unmodified	_APFEQAGQKY_					0	0	0		nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.78125	2	569.780013	1137.54547	1.4615	0.00083276	1.3915	0.00079282	2.853	0.0016256	569.7805727217276	27.646	0.12897	27.646	27.565	27.694	0					7	4	2	0	0	0	0.4758	1	8540	8540		47.96	0.043923	1	138250			2410	6647	1514	1523	2427	2427					-0.017797489077111095
APFEQAGQKY	10	Unmodified	_APFEQAGQKY_					0	0	0		nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.780517578125	2	569.780013	1137.54547	1.7539	0.00099933	-0.89572	-0.00051036	0.85817	0.00048897	569.7796189840759	27.887	0.30471	27.887	27.749	28.054	0					20	7	4	0	0	0	0.010349	1	9780	9780		141.52	70.225	1	608900			2411	6647	1514	1523	2428	2428					-0.017797489077111095
APFEQAGQKY	10	Unmodified	_APFEQAGQKY_					0	0	0		nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7799682617188	2	569.780013	1137.54547	0.63033	0.00035915	-0.17241	-9.8234E-05	0.45793	0.00026092	569.7797449255885	27.717	0.14043	27.717	27.616	27.756	0					6	3	2	0	0	0	0.3337	1	9110	9110		63.534	15.877	1	110220			2412	6647	1514	1523	2429	2429					-0.017797489077111095
APFEQAGQKY	10	Unmodified	_APFEQAGQKY_					0	0	0		nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7803344726562	2	569.780013	1137.54547	1.6246	0.00092565	-1.0404	-0.00059279	0.58419	0.00033286	569.7795648916875	27.81	0.41411	27.81	27.746	28.16	0					19	8	4	0	0	0	0.03454	1	10009	10009		114.89	51.588	1	922560			2413	6647	1514	1523	2430	2430					-0.017797489077111095
APFGEKEAY	9	Unmodified	_APFGEKEAY_					0	0	0		nc|ENSG00000105122|Q86YV0-2|RASAL3;ENSG00000105122|ENST00000343625|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.242431640625	2	506.242732	1010.47091	-0.24643	-0.00012475	-0.33136	-0.00016775	-0.57779	-0.0002925	506.2424710685216	29.119	0.26536	29.119	29.009	29.274	0					14	5	4	0	0	0	0.48389	1	10667	10667		34.173	5.9183	1	253870			2414	2330	1515	1524	2431	2431					-0.0339051171911251
APFRSEVCF	9	Unmodified	_APFRSEVCF_					0	0	0		ENSG00000163938|ENST00000418458|GNL3;nc|ENSG00000163938|Q9BVP2-2|GNL3	ENSG00000163938|ENST00000418458|GNL3	ENSG00000163938|ENST00000418458|GNL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2529907226562	2	528.252577	1054.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.686	1	40.686	40.186	41.186	0								0	0	0	0.24544	1	16173	16173		44.377	12.847	1				2415	5630	1516	1525	2432	2432					-0.03446458979988165
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-2|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2904052734375	2	505.289485	1008.56442	-0.31275	-0.00015803	1.0286	0.00051976	0.71589	0.00036173	505.2904560091657	47.188	0.22962	47.188	47.091	47.32	0					16	10	2	0	0	0	0.28897	1	18842	18842		51.193	0	1	37059			2416	6249;3184	1517	1526	2433	2433					0.06047832453987212
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-2|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2894287109375	2	505.289485	1008.56442	1.2336	0.00062334	-0.97895	-0.00049465	0.25468	0.00012869	505.7905462702252	47.236	0.24718	47.236	47.084	47.331	0					26	11	3	0	0	0	0.12834	1	18837	18837		72.879	0	1	189940			2417	6249;3184	1517	1526	2434	2434					0.06047832453987212
APGCGQGLTL	10	Unmodified	_APGCGQGLTL_					0	0	0		ENST00000413123.5_1_2:175991908-176001171:-|nuORF	ENST00000413123.5_1_2:175991908-176001171:-|nuORF	ENST00000413123.5_1_2:175991908-176001171:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.731689453125	2	458.731477	915.448402	0.79344	0.00036398	-0.99162	-0.00045489	-0.19818	-9.0911E-05	458.73111182591146	39.245	0.31237	39.245	39.066	39.378	0					16	11	2	0	0	0	0.55603	1	14920	14920		39.253	1.4413	1	74966			2418	9328	1518	1527	2435	2435					-0.012704343883683578
APGGRPSPPNP	11	Unmodified	_APGGRPSPPNP_					0	0	0		nc|ENSG00000184058|O43435-3|TBX1;ENSG00000184058|ENST00000649276|TBX1	nc|ENSG00000184058|O43435-3|TBX1	nc|ENSG00000184058|O43435-3|TBX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.775390625	2	523.772522	1045.53049	3.4286	0.0017958	3.0275	0.0015857	6.4561	0.0033815	523.7759207393921	32.521	0.62191	32.521	32.236	32.858	0					35	12	4	0	0	0	0.70609	1	12223	12223		27.047	2.5433	1	1722800			2419	6997	1519	1528	2436	2436					0.00954804014918409
APGNIAVVIP	10	Unmodified	_APGNIAVVIP_					0	0	0			REV__ENSG00000166446|ENST00000570137|CDYL2	REV__ENSG00000166446|ENST00000570137|CDYL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7873229980469	2	475.78711	949.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.236	1	34.236	33.736	34.736	0								0	0	0	0.3428	1	12735	12735		44.117	0	1		+		2420	16123	1520	1529	2437	2437					0.08286948311229025
APGPHALL	8	Unmodified	_APGPHALL_					0	0	0		ENSG00000213203|ENST00000307194|GIMAP1	ENSG00000213203|ENST00000307194|GIMAP1	ENSG00000213203|ENST00000307194|GIMAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.2263488769531	2	388.226688	774.438824	-0.6786	-0.00026345	0.83306	0.00032341	0.15445	5.9963E-05	388.2269261837649	35.826	0.26072	35.826	35.687	35.948	0					8	5	2	0	0	0	0.63381	1	13864	13864		43.626	10.133	1	104100			2421	7785	1521	1530	2438	2438					0.042581653884212756
APGRQPQKMM	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))APGRQPQKMM_					1	0	0			REV__CON__Q2KJ83	REV__CON__Q2KJ83	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.298828125	2	593.296993	1184.57943	3.1745	0.0018834	0.031576	1.8734E-05	3.2061	0.0019022	593.2968996550056	36.596	0.56599	36.596	36.297	36.863	0					23	9	3	0	0	0	0.52707	1	14229	14229		42.396	42.396	1	966360	+	+	2422	12607	1522	1531	2439	2439					-0.0054736701194997295
APGSPVSLR	9	Unmodified	_APGSPVSLR_					0	0	0		ENST00000529658.5_1_11:124746814-124747712:+|nuORF;ENST00000525448.5_1_11:124747079-124747902:+|nuORF	ENST00000529658.5_1_11:124746814-124747712:+|nuORF	ENST00000529658.5_1_11:124746814-124747712:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.253173828125	2	442.253434	882.492316	0.07496	3.3151E-05	-0.60125	-0.00026591	-0.52629	-0.00023276	442.2531655601435	21.67	0.51352	21.67	21.492	22.005	0					16	10	2	0	0	0	0.25109	1	7249	7249		55.504	0.72789	1	90466			2423	10361	1523	1532	2440	2440					0.04636918100288767
APGVQVQQQP	10	Unmodified	_APGVQVQQQP_					0	0	0			REV__ENST00000566272.1_1_16:2653454-2663962:+|nuORF	REV__ENST00000566272.1_1_16:2653454-2663962:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2816162109375	2	526.28018	1050.54581	0.21914	0.00011533	2.3619	0.001243	2.581	0.0013584	526.2814964646709	12.955	0.18074	12.955	12.832	13.012	0					8	4	2	0	0	0	0.65213	1	3057	3057		27.882	2.3082	1	152000	+		2424	18936	1524	1533	2441	2441					0.022556708121555857
APGYGSAGHYG	11	Unmodified	_APGYGSAGHYG_					0	0	0			REV__TLX2|p.A98Rfs*16|2|0.18|ENSG00000115297|chr2:74515092-74515092|G/-|frameshift_variant	REV__TLX2|p.A98Rfs*16|2|0.18|ENSG00000115297|chr2:74515092-74515092|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.1552429199219	3	346.154279	1035.44101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.809	1	45.809	45.309	46.309	0								0	0	0	0.45674	1	17013	17013		20.03	1.7061	1		+		2425	14105	1525	1534	2442	2442					-0.07529450664424076
APHLSKVSM	9	Unmodified	_APHLSKVSM_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2633361816406	2	485.262945	968.511337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.787	1	24.787	24.287	25.287	0								0	0	0	0.18645	1	8388	8388		52.937	12.159	1				2426	4728	1526	1535	2443	2443					0.025821313996971185
APHSCDAL	8	Unmodified	_APHSCDAL_					0	0	0		MROH2B|p.T942A|1|0.2|ENSG00000171495|chr5:41017910-41017910|T/C|missense_variant	MROH2B|p.T942A|1|0.2|ENSG00000171495|chr5:41017910-41017910|T/C|missense_variant	MROH2B|p.T942A|1|0.2|ENSG00000171495|chr5:41017910-41017910|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.1819152832031	2	407.18162	812.348688	0.40612	0.00016536	0.73773	0.00030039	1.1438	0.00046575	407.18182879901156	29.691	0.3118	29.691	29.54	29.851	0					13	6	3	0	0	0	0.61433	1	11009	11009		46.766	2.2354	1	387910			2427	11373	1527	1536	2444	2444					-0.06499252002322464
APIFPFVLF	9	Unmodified	_APIFPFVLF_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.8719482421875	3	350.872273	1049.59499	-1.9916	-0.00069881	0.90144	0.00031629	-1.0902	-0.00038251	350.872592206164	26.241	0.39961	26.241	26.109	26.509	0					21	9	3	0	0	0	0.45358	1	8409	8409		37.159	10.363	1	688560	+		2428	14716	1528	1537	2445	2445					0.07217610839029476
APIGASFIKY	10	Unmodified	_APIGASFIKY_					0	0	0			REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1	REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8019409179688	2	533.800217	1065.58588	3.3878	0.0018084	-0.3326	-0.00017754	3.0552	0.0016309	533.8000556714909	22.164	0.71752	22.164	22.004	22.722	0					24	14	3	0	0	0	0.44601	1	7342	7342		51.193	5.2407	1	1007600	+		2429	22014	1529	1538	2446	2446					0.055712174827021954
APINEVARF	9	Unmodified	_APINEVARF_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.77978515625	2	508.779816	1015.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.011	1	37.011	36.511	37.511	0								0	0	0	0.3245	1	14433	14433		30.318	2.4355	1				2430	5776	1530	1539	2447	2447					0.03792876163083747
APIPMVPVGGI	11	Unmodified	_APIPMVPVGGI_					0	0	0		HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant;HIVEP2|p.N2325Kfs*44|1|0.35|ENSG00000010818|chr6:142753473-142753474|-/T|frameshift_variant;ENSG00000010818|ENST00000367603|HIVEP2	HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant	HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.8717956542969	3	350.872056	1049.59434	-0.82959	-0.00029108	0.34196	0.00011998	-0.48763	-0.0001711	350.8722227910357	26.151	0.35962	26.151	26.057	26.416	0					31	11	4	0	0	0	0.73592	1	8178	8178		20.837	0	1	1042700			2431	1042	1531	1540	2448	2448					0.07152448127681055
APITTVVTM	9	Unmodified	_APITTVVTM_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7599792480469	2	466.759704	931.504854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.288	1	44.288	43.788	44.788	0								0	0	0	0.10121	1	16619	16619		71.296	15.791	1				2432	3057;11390	1532	1541	2449	2449					0.03636193448312497
APIVPTLWQ	9	Unmodified	_APIVPTLWQ_					0	0	0			REV__nc|ENSG00000154721|P57087-3|JAM2	REV__nc|ENSG00000154721|P57087-3|JAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.19891357421875	3	342.199049	1023.57532	-1.9459	-0.00066589	2.0286	0.00069418	0.082681	2.8293E-05	342.19954507261446	25.207	0.26901	25.207	25.159	25.428	0					8	6	2	0	0	0	0.61124	1	8009	8009		19.104	0	1	67480	+		2433	21070	1533	1542	2450	2450					0.06447234828283399
APKADRERK	9	Unmodified	_APKADRERK_					0	0	0		COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;COL5A1|p.G1351Efs*137|2|0.4|ENSG00000130635|chr9:134815605-134815605|C/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8099365234375	2	535.806897	1069.59924	3.3578	0.0017991	-0.046883	-2.512E-05	3.3109	0.001774	535.8072876601766	15.2	0.16743	15.2	15.13	15.297	0					11	3	4	0	0	0	0.47038	1	3984	3984		35.618	5.3006	1	1783400			2434	611	1534	1543	2451	2451					0.06722468314660546
APKKSKADGQ	10	Unmodified	_APKKSKADGQ_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2899780273438	2	515.288005	1028.56146	1.4049	0.0007239	2.174	0.0011202	3.5788	0.0018441	515.2890811271681	41.423	0.14974	41.423	41.336	41.486	0					9	6	2	0	0	0	0.64162	1	16270	16270		29.17	0.020503	1	53896			2435	6369	1535	1544	2452	2452					0.04831957329179204
APLDSIHSL	9	Unmodified	_APLDSIHSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.75848388671875	2	476.758549	951.502546	-0.63078	-0.00030073	0.11088	5.2861E-05	-0.51991	-0.00024787	476.7587877577122	38.703	0.26611	38.703	38.543	38.81	0					9	5	2	0	0	0	0.2873	1	15228	15228		51.335	5.3835	1	154010			2436	6178	1536	1545	2453	2453					0.024854810348642786
APLDSIHSL	9	Unmodified	_APLDSIHSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7584228515625	2	476.758549	951.502546	0.79932	0.00038108	-0.75921	-0.00036196	0.04011	1.9123E-05	476.75815430278834	38.686	0.21561	38.686	38.577	38.792	0					9	4	3	0	0	0	0.13519	1	15243	15243		71.296	19.96	1	254640			2437	6178	1536	1545	2454	2454					0.024854810348642786
APLKIQAYF	9	Unmodified	_APLKIQAYF_					0	0	0		nc|ENSG00000114013|P42081-4|CD86;nc|ENSG00000114013|P42081-3|CD86;ENSG00000114013|ENST00000330540|CD86	nc|ENSG00000114013|P42081-4|CD86	nc|ENSG00000114013|P42081-4|CD86	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8720397949219	3	350.870932	1049.59097	3.0378	0.0010659	-0.30721	-0.00010779	2.7306	0.00095807	350.87086102461456	26.426	1.7791	26.426	25.866	27.645	0					60	35	5	0	0	0	0.41354	1	9298	9298		47.657	22.083	1	8607000			2438	2829	1537	1546	2455	2455					0.06815521345311026
APLKSKMIY	9	Oxidation (M)	_APLKSKM(Oxidation (M))IY_		APLKSKM(1)IY		APLKSKM(64)IY	0	0	1		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.8033447265625	2	533.801903	1065.58925	1.0996	0.00058695	1.1388	0.00060788	2.2383	0.0011948	533.8022114171465	21.956	0.23183	21.956	21.841	22.073	0					11	6	2	0	0	0	0.17854	1	6125	6125		64.207	22.781	1	97880			2439	6381	1538	1547	2456	2456		261			0.05908144265072224
APLKSKMIY	9	Oxidation (M)	_APLKSKM(Oxidation (M))IY_		APLKSKM(1)IY		APLKSKM(93)IY	0	0	1		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.8026733398438	2	533.801903	1065.58925	2.2913	0.0012231	-1.4699	-0.00078464	0.82135	0.00043844	533.8012783684092	22.276	1.0055	22.276	21.653	22.659	0					39	23	4	0	0	0	0.056004	1	7212	7212		93.143	40.207	1	998430			2440	6381	1538	1547	2457	2457		261			0.05908144265072224
APLKSKMIY	9	Oxidation (M)	_APLKSKM(Oxidation (M))IY_		APLKSKM(1)IY		APLKSKM(80)IY	0	0	1		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.80224609375	2	533.801903	1065.58925	-0.48207	-0.00025733	1.6197	0.00086459	1.1376	0.00060726	533.8027114564763	21.969	0.35352	21.969	21.852	22.206	0					24	11	3	0	0	0	0.098791	1	6391	6391		79.713	24.208	1	226520			2441	6381	1538	1547	2458	2458		261			0.05908144265072224
APLKSKMIY	9	Oxidation (M)	_APLKSKM(Oxidation (M))IY_		APLKSKM(1)IY		APLKSKM(99)IY	0	0	1		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8021850585938	2	533.801903	1065.58925	1.7574	0.00093811	-1.1769	-0.00062821	0.58056	0.0003099	533.8013317434268	22.162	0.65528	22.162	22.005	22.66	0					34	13	4	0	0	0	0.0406	1	7450	7450		98.629	37.657	1	1654500			2442	6381	1538	1547	2459	2459		261			0.05908144265072224
APLKSKMIY	9	Oxidation (M)	_APLKSKM(Oxidation (M))IY_		APLKSKM(1)IY		APLKSKM(70)IY	0	0	1		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.8018188476562	2	533.801903	1065.58925	1.1168	0.00059614	-0.56345	-0.00030077	0.55333	0.00029537	533.8014942435577	22.056	0.35907	22.056	21.9	22.259	0					15	8	3	0	0	0	0.1424	1	6487	6487		69.628	21.97	1	113620			2443	6381	1538	1547	2460	2460		261			0.05908144265072224
APLKSKMIY	9	Oxidation (M)	_APLKSKM(Oxidation (M))IY_		APLKSKM(1)IY		APLKSKM(41)IY	0	0	1		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.8027954101562	2	533.801903	1065.58925	-1.3143	-0.00070159	1.9198	0.0010248	0.60545	0.00032319	533.8029747866855	22.044	0.2731	22.044	21.929	22.202	0					14	6	3	0	0	0	0.40353	1	6498	6498		41.427	11.585	1	137920			2444	6381	1538	1547	2461	2461		261			0.05908144265072224
APLKSKMIY	9	Oxidation (M)	_APLKSKM(Oxidation (M))IY_		APLKSKM(1)IY		APLKSKM(100)IY	0	0	1		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8021850585938	2	533.801903	1065.58925	1.8114	0.00096692	-1.4093	-0.0007523	0.40206	0.00021462	533.8013102570934	22.181	0.568	22.181	21.97	22.538	0					34	11	4	0	0	0	0.035062	1	7326	7326		104.06	47.336	1	1854500			2445	6381	1538	1547	2462	2462		261			0.05908144265072224
APLKSKMIY	9	Unmodified	_APLKSKMIY_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.8037719726562	2	525.804445	1049.59434	1.358	0.00071406	-0.65231	-0.00034299	0.70572	0.00037107	525.8042523589049	26.175	0.45221	26.175	26.061	26.514	0					41	15	4	0	0	0	0.078509	1	7890	7890		85.161	44.588	1	1063200			2446	6381	1538	1548	2463	2463					0.07152448127681055
APLKSKMIY	9	Unmodified	_APLKSKMIY_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.804443359375	2	525.804445	1049.59434	0.50885	0.00026755	-1.2796	-0.00067284	-0.7708	-0.00040529	525.803480440492	26.203	0.23706	26.203	26.086	26.323	0					16	7	3	0	0	0	0.16002	1	8207	8207		66.429	18.514	1	173560			2447	6381	1538	1548	2464	2464					0.07152448127681055
APLKSKMIY	9	Unmodified	_APLKSKMIY_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8052978515625	2	525.804445	1049.59434	0.97449	0.00051239	-0.74124	-0.00038975	0.23326	0.00012265	525.804038627163	26.435	0.90975	26.435	26.277	27.186	0					48	18	5	0	0	0	0.016683	2	9425	9425;9620		127.46	62.107	1	7517600			2448	6381	1538	1548	2465;2466	2465					0.07152448127681055
APLKSKMIY	9	Unmodified	_APLKSKMIY_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8058471679688	2	525.804445	1049.59434	1.6652	0.00087555	-0.50436	-0.0002652	1.1608	0.00061035	525.8043299408931	26.268	0.44892	26.268	26.133	26.582	0					25	10	4	0	0	0	0.037569	1	8401	8401		101.6	43.789	1	737280			2449	6381	1538	1548	2467	2467					0.07152448127681055
APLKSKMIY	9	Unmodified	_APLKSKMIY_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8048706054688	2	525.804445	1049.59434	1.1897	0.00062555	-0.6388	-0.00033589	0.55089	0.00028966	525.804294809383	26.251	0.40165	26.251	26.121	26.523	0					25	9	4	0	0	0	0.11898	1	8398	8398		75.043	25.019	1	956740			2450	6381	1538	1548	2468	2468					0.07152448127681055
APLKSKMIY	9	Unmodified	_APLKSKMIY_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.8719177246094	3	350.872056	1049.59434	-0.076271	-2.6762E-05	-0.46518	-0.00016322	-0.54145	-0.00018998	350.87197685996387	26.271	0.3971	26.271	26.081	26.478	0					21	9	3	0	0	0	0.43426	1	8415	8415		64.207	39.688	1	611060			2451	6381	1538	1548	2469	2469					0.07152448127681055
APLKSKMIY	9	Unmodified	_APLKSKMIY_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8047485351562	2	525.804445	1049.59434	0.59121	0.00031086	-0.30563	-0.0001607	0.28558	0.00015016	525.8042973635816	26.364	1.1216	26.364	26.202	27.323	0					54	22	6	0	0	0	0.020674	1	9288	9288		120.87	67.932	1	9590100			2452	6381	1538	1548	2470	2470					0.07152448127681055
APLLHGPA	8	Unmodified	_APLLHGPA_					0	0	0			REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.22637939453125	2	388.226688	774.438824	0.86338	0.00033519	-0.96235	-0.00037361	-0.098969	-3.8423E-05	388.22626963343265	35.884	0.24014	35.884	35.79	36.03	0					12	6	3	0	0	0	0.63381	1	13512	13512		43.626	0	1	140210	+		2453	12530	1539	1549	2471	2471					0.042581653884212756
APLLHGPA	8	Unmodified	_APLLHGPA_					0	0	0			REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.226806640625	2	388.226688	774.438824	0.18176	7.0564E-05	-0.16862	-6.5464E-05	0.013138	5.1005E-06	388.22655320455874	35.891	0.28404	35.891	35.744	36.028	0					13	8	2	0	0	0	0.70073	1	13950	13950		33.493	8.989	1	155020	+		2454	12530	1539	1549	2472	2472					0.042581653884212756
APLPHAAV	8	Unmodified	_APLPHAAV_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;ENST00000586152.1_1_16:4926958-4927603:+|nuORF	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.2265319824219	2	388.226688	774.438824	0.52236	0.00020279	-1.7233	-0.00066904	-1.201	-0.00046625	388.2263500244655	35.825	0.46158	35.825	35.671	36.132	0					13	9	2	0	0	0	0.63381	1	13881	13881		43.626	0	1	259460			2455	3087	1540	1550	2473	2473					0.04258165388409907
APLQEKVVF	9	Unmodified	_APLQEKVVF_					0	0	0		ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1	ENSG00000006831|ENST00000357103|ADIPOR2	ENSG00000006831|ENST00000357103|ADIPOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8001708984375	2	515.800217	1029.58588	1.2212	0.00062991	-1.3835	-0.00071363	-0.1623	-8.3716E-05	515.7995767819851	38.231	0.36729	38.231	38.072	38.439	0					31	14	3	0	0	0	0.14578	1	14528	14528		68.846	22.874	1	434640			2456	990	1541	1551	2474	2474					0.07227217482704873
APLQEKVVF	9	Unmodified	_APLQEKVVF_					0	0	0		ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1	ENSG00000006831|ENST00000357103|ADIPOR2	ENSG00000006831|ENST00000357103|ADIPOR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8016967773438	2	515.800217	1029.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.992	1	37.992	37.492	38.492	0								0	0	0	0.27939	1	13598	13598		39.253	7.298	1				2457	990	1541	1551	2475	2475					0.07227217482704873
APLQEKVVF	9	Unmodified	_APLQEKVVF_					0	0	0		ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1	ENSG00000006831|ENST00000357103|ADIPOR2	ENSG00000006831|ENST00000357103|ADIPOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8003540039062	2	515.800217	1029.58588	0.17299	8.9226E-05	-0.14563	-7.5118E-05	0.027352	1.4108E-05	515.8002418705996	38.134	0.39056	38.134	37.944	38.334	0					23	8	4	0	0	0	0.25761	1	14936	14936		54.722	5.2808	1	664610			2458	990	1541	1551	2476	2476					0.07227217482704873
APLTSIQIRF	10	Unmodified	_APLTSIQIRF_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.338134765625	2	573.337498	1144.66044	0.072475	4.1552E-05	0.59859	0.0003432	0.67107	0.00038475	573.3379147998196	31.695	0.19484	31.695	31.628	31.823	0					14	7	2	0	0	0	0.55603	1	10515	10515		39.253	13.679	1	75010			2459	4321	1542	1552	2477	2477					0.09389980294099587
APMRAVCQ	8	Unmodified	_APMRAVCQ_					0	0	0			REV__BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant	REV__BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.21624755859375	2	438.21494	874.415328	2.6626	0.0011668	0.44143	0.00019344	3.104	0.0013602	438.2150777760633	24.796	0.39916	24.796	24.645	25.044	0					17	8	4	0	0	0	0.6282	1	8588	8588		44.531	44.531	1	1560400	+		2460	12292	1543	1553	2478	2478					-0.02690339712057721
APNFPVFVIF	10	Unmodified	_APNFPVFVIF_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.8184204101562	2	575.81841	1149.62227	1.8444	0.001062	-1.9518	-0.0011239	-0.10745	-6.1871E-05	575.8173022611511	38.295	0.40639	38.295	38.168	38.574	0					29	14	3	0	0	0	0.37692	1	14994	14994		58.782	12.81	1	167540			2461	4738	1544	1554	2479	2479					0.05344094379393027
APPAWSAL	8	Unmodified	_APPAWSAL_					0	0	0		COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant;COL5A1|p.P870Qfs*204|1|0.5|ENSG00000130635|chr9:134786009-134786009|C/-|frameshift_variant;COL5A1|p.K933Rfs*141|1|0.32|ENSG00000130635|chr9:134795309-134795309|C/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.7166442871094	2	406.718696	811.422839	0.97704	0.00039738	0.038039	1.5471E-05	1.0151	0.00041285	406.718886811733	24.316	0.89665	24.316	23.565	24.462	0					27	20	2	0	0	0	0.61433	1	8096	8096		46.766	2.2354	1	1634500			2462	612	1545	1555	2480	2480					0.009584591515135799
APPGVTQK	8	Unmodified	_APPGVTQK_					0	0	0		ENST00000470776.1_1_3:8543537-8579195:+|nuORF;nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1	ENST00000470776.1_1_3:8543537-8579195:+|nuORF	ENST00000470776.1_1_3:8543537-8579195:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.22930908203125	2	399.229428	796.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.429	1	12.429	11.929	12.929	0								0	0	0	1.7419	1	2641	2641		63.306	0	1				2463	1473	1546	1556	2481	2481					0.037938441802339185
APPPAPAA	8	Unmodified	_APPPAPAA_					0	0	0		ENSG00000164379|ENST00000296839|FOXQ1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.19219970703125	2	346.192314	690.370075	0.68759	0.00023804	-0.94862	-0.00032841	-0.26104	-9.0369E-05	346.19202556444094	32.062	0.17334	32.062	31.977	32.151	0					8	4	2	0	0	0	0.77013	1	11745	11745		24.504	0	1	149480			2464	5687	1547	1557	2482	2482					0.012505010887025492
APPRAGGR	8	Unmodified	_APPRAGGR_					0	0	0		ENST00000562648.2_1_16:743493-744282:-|nuORF	ENST00000562648.2_1_16:743493-744282:-|nuORF	ENST00000562648.2_1_16:743493-744282:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.224853515625	2	391.225011	780.435469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.639	1	14.639	14.139	15.139	0								0	0	0	1.7419	1	3045	3045		52.299	7.7681	1				2465	10724	1548	1558	2483	2483					0.03646915334422829
APPRAGGR	8	Unmodified	_APPRAGGR_					0	0	0		ENST00000562648.2_1_16:743493-744282:-|nuORF	ENST00000562648.2_1_16:743493-744282:-|nuORF	ENST00000562648.2_1_16:743493-744282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.22515869140625	2	391.225011	780.435469	0.43531	0.0001703	-0.24419	-9.5534E-05	0.19112	7.477E-05	391.22494108374457	14.918	0.60331	14.918	14.813	15.417	0					18	12	2	0	0	0	0.49887	1	3963	3963		60.294	10.269	1	321780			2466	10724	1548	1558	2484	2484					0.03646915334422829
APPSSALAR	9	Unmodified	_APPSSALAR_					0	0	0			REV__MBD1|p.P310S|1|0.24|ENSG00000141644|chr18:50275027-50275027|G/A|missense_variant	REV__MBD1|p.P310S|1|0.24|ENSG00000141644|chr18:50275027-50275027|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.24560546875	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.893	1	17.893	17.393	18.393	0								0	0	0	0.28996	1	4358	4358		37.159	6.6555	1		+		2467	20870	1549	1559	2485	2485					0.03716631583222352
APPTLGSAPD	10	Unmodified	_APPTLGSAPD_					0	0	0			REV__ENST00000263370.2_1_19:41246176-41246248:+|nuORF	REV__ENST00000263370.2_1_19:41246176-41246248:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7398986816406	2	463.234907	924.455261	-0.74544	-0.00034531	3.2593	0.0015098	2.5139	0.0011645	463.23494298736955	30.93	0.37492	30.93	30.742	31.117	0					39	13	4	0	0	0	0.52707	1	10174	10174		42.396	7.1954	1	300290	+		2468	18046	1550	1560	2486	2486					-0.00998798236150833
APRDLTPQ	8	Unmodified	_APRDLTPQ_					0	0	0			REV__FKRP|p.A107T|1|0.17|ENSG00000181027|chr19:46755769-46755769|G/A|missense_variant	REV__FKRP|p.A107T|1|0.17|ENSG00000181027|chr19:46755769-46755769|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.242919921875	2	449.243067	896.47158	-0.094122	-4.2284E-05	-0.52074	-0.00023394	-0.61486	-0.00027622	449.2430566335251	19.289	0.68539	19.289	18.711	19.396	0					25	14	3	0	0	0	0.63077	1	5869	5869		44.117	0	1	159320	+		2469	20675	1551	1561	2487	2487					0.0192032772059747
APREGGGGG	9	Unmodified	_APREGGGGG_					0	0	0		ENST00000273067.4_1_2:217236318-217236390:-|nuORF	ENST00000273067.4_1_2:217236318-217236390:-|nuORF	ENST00000273067.4_1_2:217236318-217236390:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.1841735839844	2	379.183009	756.351465	3.2438	0.00123	-0.99744	-0.00037821	2.2464	0.0008518	379.18242682148536	46.955	0.29501	46.955	46.827	47.122	0					21	14	2	0	0	0	0.57706	1	18759	18759		24.203	2.2429	1	144850			2470	8389	1552	1562	2488	2488					-0.036456605531270725
APRGPAGR	8	Unmodified	_APRGPAGR_					0	0	0		ENST00000354619.9_1_1:236433277-236445243:-|nuORF	ENST00000354619.9_1_1:236433277-236445243:-|nuORF	ENST00000354619.9_1_1:236433277-236445243:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.22515869140625	2	391.225011	780.435469	-0.12477	-4.8813E-05	0.26695	0.00010444	0.14218	5.5623E-05	391.2251201693764	14.966	0.63972	14.966	14.851	15.49	0					30	15	3	0	0	0	0.52345	1	3798	3798		57.811	5.5121	1	587040			2471	8786	1553	1563	2489	2489					0.03646915334422829
APRQLARR	8	Unmodified	_APRQLARR_					0	0	0			REV__ENST00000330115.3_1_3:194349151-194354396:-|nuORF	REV__ENST00000330115.3_1_3:194349151-194354396:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.29833984375	2	484.299042	966.583531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.957	1	12.957	12.457	13.457	0								0	0	0	1.7419	1	3042	3042		19.36	1.0356	1		+		2472	18376	1554	1564	2490	2490					0.09890226588254336
APRVARPGM	9	Unmodified	_APRVARPGM_					0	0	0		ENST00000340648.5_1_21:45079492-45079627:+|nuORF	ENST00000340648.5_1_21:45079492-45079627:+|nuORF	ENST00000340648.5_1_21:45079492-45079627:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.77056884765625	2	477.768729	953.522904	-0.64491	-0.00030812	4.3234	0.0020656	3.6785	0.0017575	477.77087766066006	15.857	0.11581	15.857	15.797	15.913	0					4	2	2	0	0	0	0.5879	1	4282	4282		23.042	2.0956	1	819180			2473	8730	1555	1565	2491	2491					0.0442837321368188
APSAPLSSRY	10	Unmodified	_APSAPLSSRY_					0	0	0			REV__ENST00000366672.4_1_1:230416903-230417056:+|nuORF	REV__ENST00000366672.4_1_1:230416903-230417056:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7747192382812	2	524.774731	1047.53491	1.1536	0.00060538	-0.13615	-7.1446E-05	1.0174	0.00053393	524.7747926602183	32.242	0.18727	32.242	32.14	32.327	0					8	5	2	0	0	0	0.52275	1	11203	11203		42.864	7.246	1	101390	+		2474	18586	1556	1566	2492	2492					0.013042684378433478
APSKTSLIM	9	Unmodified	_APSKTSLIM_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.26470947265625	2	474.265153	946.515753	0.28151	0.00013351	-0.65126	-0.00030887	-0.36975	-0.00017536	474.2648245673667	31.159	0.46363	31.159	30.999	31.463	0					20	11	2	0	0	0	0.19605	1	11311	11311		62.107	5.3864	1	2746300			2475	11821	1557	1567	2493	2493					0.04035595822585947
APSKTSLIM	9	Unmodified	_APSKTSLIM_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2647399902344	2	474.265153	946.515753	-0.46585	-0.00022094	-0.12444	-5.9019E-05	-0.5903	-0.00027996	474.2650787420149	30.907	0.38131	30.907	30.764	31.145	0					18	10	2	0	0	0	0.22377	1	10589	10589		58.782	9.3404	1	837200			2476	11821	1557	1567	2494	2494					0.04035595822585947
APSPPPLGPGA	11	Unmodified	_APSPPPLGPGA_					0	0	0			REV__ENST00000351266.8_1_9:34551759-34552056:-|nuORF	REV__ENST00000351266.8_1_9:34551759-34552056:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7615966796875	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.872	1	36.872	36.372	37.372	0								0	0	0	0.44646	1	14389	14389		26.693	0	1		+		2477	18495	1558	1568	2495	2495					0.02625784897475114
APSPVLQLP	9	Unmodified	_APSPVLQLP_					0	0	0		ENST00000456585.5_1_6:168397599-168397749:-|nuORF	ENST00000456585.5_1_6:168397599-168397749:-|nuORF	ENST00000456585.5_1_6:168397599-168397749:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.27392578125	2	461.273835	920.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.06	1	38.06	37.56	38.56	0								0	0	0	0.19749	1	14932	14932		51.335	8.4712	1				2478	9688	1559	1569	2496	2496					0.06967259419900529
APSVVKISY	9	Unmodified	_APSVVKISY_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.27886962890625	2	482.279118	962.543683	0.36253	0.00017484	-0.7225	-0.00034845	-0.35998	-0.00017361	482.2787098332016	34.83	0.27961	34.83	34.702	34.982	0					14	7	3	0	0	0	0.056004	1	12983	12983		93.143	37.639	1	198120			2479	1639	1560	1570	2497	2497					0.06091242074319325
APSVVKISY	9	Unmodified	_APSVVKISY_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.279052734375	2	482.279118	962.543683	-0.10281	-4.9584E-05	0.8343	0.00040237	0.73149	0.00035278	482.27936005630664	34.838	0.28701	34.838	34.699	34.986	0					18	8	3	0	0	0	0.035106	1	13439	13439		104.01	37.584	1	280890			2480	1639	1560	1570	2498	2498					0.06091242074319325
APSVVKISY	9	Unmodified	_APSVVKISY_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2791748046875	2	482.279118	962.543683	-0.61539	-0.00029679	2.9629	0.0014289	2.3475	0.0011321	482.28064369929007	34.742	0.46245	34.742	34.635	35.097	0					14	9	2	0	0	0	0.02429	1	13356	13356		114.89	63.559	1	758700			2481	1639	1560	1570	2499	2499					0.06091242074319325
APSVVKVSY	9	Unmodified	_APSVVKVSY_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.27178955078125	2	475.271293	948.528032	0.96026	0.00045638	-0.06187	-2.9405E-05	0.89839	0.00042698	475.2712159111557	31.05	0.1412	31.05	30.973	31.115	0					8	5	2	0	0	0	0.13726	1	9957	9957		70.816	12.034	1	55241			2482	3515	1561	1571	2500	2500					0.05170955557287016
APSVVKVSY	9	Unmodified	_APSVVKVSY_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.271240234375	2	475.271293	948.528032	3.5931	0.0017077	-2.1964	-0.0010439	1.3968	0.00066384	475.2693064374886	31.109	0.19234	31.109	30.988	31.181	0					17	7	3	0	0	0	0.035062	1	10259	10259		104.06	43.085	1	104870			2483	3515	1561	1571	2501	2501					0.05170955557287016
APSVVKVSY	9	Unmodified	_APSVVKVSY_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2709045410156	2	475.271293	948.528032	-0.11975	-5.6912E-05	1.3989	0.00066484	1.2791	0.00060793	475.27101551757335	31.317	0.26657	31.317	31.188	31.454	0					18	6	4	0	0	0	0.070005	1	11771	11771		88.177	27.205	1	935380			2484	3515	1561	1571	2502	2502					0.05170955557287016
APSVVKVSY	9	Unmodified	_APSVVKVSY_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2713928222656	2	475.271293	948.528032	-0.61427	-0.00029194	4.3062	0.0020466	3.6919	0.0017547	475.2721343648198	31.298	0.55931	31.298	31.027	31.586	0					30	11	4	0	0	0	0.019258	1	11665	11665		123.21	32.431	1	648490			2485	3515	1561	1571	2503	2503					0.05170955557287016
APTEAQIWII	10	Unmodified	_APTEAQIWII_					0	0	0			REV__IGSF1|p.F134I|1|0.11|ENSG00000147255|chrX:131285446-131285446|A/T|missense_variant	REV__IGSF1|p.F134I|1|0.11|ENSG00000147255|chrX:131285446-131285446|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.2118225097656	3	381.213246	1140.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.149	1	13.149	12.649	13.649	0								0	0	0	0.4201	1	2980	2980		16.007	1.3131	1		+		2486	20759	1562	1572	2504	2504					0.053225851658453394
APTPGPVQLK	10	Unmodified	_APTPGPVQLK_					0	0	0			REV__ENST00000361740.8_1_22:43015308-43015401:-|nuORF	REV__ENST00000361740.8_1_22:43015308-43015401:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2973327636719	2	504.297842	1006.58113	-0.83573	-0.00042146	2.8893	0.0014571	2.0536	0.0010356	504.29891047576757	23.49	0.95164	23.49	22.908	23.86	0					42	32	2	0	0	0	0.34667	1	6921	6921		62.107	5.6736	1	184440	+		2487	18574	1563	1573	2505	2505					0.07810333339944009
APTSSAYEF	9	Unmodified	_APTSSAYEF_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;ENST00000593636.1_1_19:50321571-50322554:+|nuORF;MED25|p.P201Rfs*13|3|0.22|ENSG00000104973|chr19:49829856-49829856|C/-|frameshift_variant;MED25|p.A202Gfs*197|1|0.36|ENSG00000104973|chr19:49829855-49829856|-/C|frameshift_variant	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7192687988281	2	486.71909	971.423627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.015	1	39.015	38.515	39.515	0								0	0	0	0.13522	1	15330	15330		63.306	9.9548	1				2488	11468	1564	1574	2506	2506					-0.06322790990088833
APTSSAYEF	9	Unmodified	_APTSSAYEF_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;ENST00000593636.1_1_19:50321571-50322554:+|nuORF;MED25|p.P201Rfs*13|3|0.22|ENSG00000104973|chr19:49829856-49829856|C/-|frameshift_variant;MED25|p.A202Gfs*197|1|0.36|ENSG00000104973|chr19:49829855-49829856|-/C|frameshift_variant	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.718994140625	2	486.71909	971.423627	-0.54772	-0.00026658	0.79838	0.00038859	0.25066	0.000122	486.7193356294591	38.99	0.20986	38.99	38.886	39.096	0					7	4	2	0	0	0	0.20551	1	15365	15365		60.972	11.53	1	72969			2489	11468	1564	1574	2507	2507					-0.06322790990088833
APVEVTHNF	9	Unmodified	_APVEVTHNF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2560729980469	2	507.256174	1012.49779	1.7798	0.00090282	-1.0324	-0.0005237	0.74739	0.00037912	507.25579064022355	30.34	0.17669	30.34	30.238	30.414	0					10	6	2	0	0	0	0.085655	1	9638	9638		82.75	43.944	1	89722			2490	950	1565	1575	2508	2508					-0.007954031079066226
APVEVTHNF	9	Unmodified	_APVEVTHNF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.256103515625	2	507.256174	1012.49779	0.84677	0.00042953	-0.043395	-2.2013E-05	0.80337	0.00040752	507.2560840848856	30.326	0.28566	30.326	30.227	30.513	0					20	10	3	0	0	0	0.063171	1	9636	9636		90.601	34.167	1	380950			2491	950	1565	1575	2509	2509					-0.007954031079066226
APVEVTHNF	9	Unmodified	_APVEVTHNF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2566223144531	2	507.256174	1012.49779	0.89375	0.00045336	-0.90496	-0.00045905	-0.011208	-5.6852E-06	507.25581412707425	30.629	0.31236	30.629	30.458	30.771	0					16	7	3	0	0	0	0.056004	1	11033	11033		93.143	47.171	1	591170			2492	950	1565	1575	2510	2510					-0.007954031079066226
APVEVTHNF	9	Unmodified	_APVEVTHNF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2560729980469	2	507.256174	1012.49779	0.16375	8.3063E-05	-0.42379	-0.00021497	-0.26004	-0.00013191	507.2559465268472	30.609	0.33469	30.609	30.464	30.798	0					17	7	4	0	0	0	0.04067	1	11431	11431		98.582	54.465	1	2305200			2493	950	1565	1575	2511	2511					-0.007954031079066226
APVEVTHNF	9	Unmodified	_APVEVTHNF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2562255859375	2	507.256174	1012.49779	0.36193	0.00018359	-0.45009	-0.00022831	-0.088159	-4.4719E-05	507.25592032681783	30.361	0.27045	30.361	30.262	30.533	0					12	6	3	0	0	0	0.056004	1	10338	10338		93.143	45.486	1	488850			2494	950	1565	1575	2512	2512					-0.007954031079066226
APVEVTHNF	9	Unmodified	_APVEVTHNF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.25604248046875	2	507.256174	1012.49779	-0.17125	-8.6867E-05	-0.071334	-3.6185E-05	-0.24258	-0.00012305	507.2560977811179	30.58	0.45583	30.58	30.393	30.848	0					20	9	4	0	0	0	0.0025054	1	11327	11327		171.53	94.214	1	2311100			2495	950	1565	1575	2513	2513					-0.007954031079066226
APVGGHILSY	10	Unmodified	_APVGGHILSY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2743225097656	2	507.274367	1012.53418	0.85037	0.00043137	-1.1263	-0.00057133	-0.2759	-0.00013996	507.27345332767624	35.098	0.38457	35.098	34.99	35.375	0					27	17	3	0	0	0	0.26673	1	11491	11491		71.296	14.575	1	173610			2496	7501	1566	1576	2514	2514					0.028414737888056152
APVGGHILSY	10	Unmodified	_APVGGHILSY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2740783691406	2	507.274367	1012.53418	0.86914	0.00044089	-2.6671	-0.001353	-1.798	-0.00091208	507.2730239894354	35.386	0.45381	35.386	35.268	35.722	0					32	12	3	0	0	0	0.22198	1	13242	13242		76.774	20.053	1	985370			2497	7501	1566	1576	2515	2515					0.028414737888056152
APVGGHILSY	10	Unmodified	_APVGGHILSY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2740173339844	2	507.274367	1012.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.141	1	35.141	34.641	35.641	0								0	0	0	0.20728	1	11878	11878		63.306	4.5243	1				2498	7501	1566	1576	2516	2516					0.028414737888056152
APVGGHILSY	10	Unmodified	_APVGGHILSY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2742919921875	2	507.274367	1012.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.341	1	35.341	34.841	35.841	0								0	0	0	0.088119	1	13688	13688		82.305	15.876	1				2499	7501	1566	1576	2517	2517					0.028414737888056152
APVGGHILSY	10	Unmodified	_APVGGHILSY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2742614746094	2	507.274367	1012.53418	0.092246	4.6794E-05	-1.078	-0.00054684	-0.98575	-0.00050005	507.2731551778367	35.157	0.36485	35.157	35.082	35.447	0					18	12	3	0	0	0	0.357	1	12495	12495		60.972	4.2509	1	248020			2500	7501	1566	1576	2518	2518					0.028414737888056152
APVGGHILSY	10	Unmodified	_APVGGHILSY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2740783691406	2	507.274367	1012.53418	-0.17321	-8.7866E-05	-1.0848	-0.00055031	-1.2581	-0.00063818	507.2735194941066	35.288	0.37275	35.288	35.179	35.552	0					17	7	3	0	0	0	0.17679	1	13597	13597		82.305	25.584	1	1169300			2501	7501	1566	1576	2519	2519					0.028414737888056152
APVGGHILSY	10	Unmodified	_APVGGHILSY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2740478515625	2	507.274367	1012.53418	1.2874	0.00065307	-2.6257	-0.0013319	-1.3383	-0.00067888	507.2730312894929	35.322	0.52375	35.322	35.113	35.637	0					29	10	4	0	0	0	0.026453	1	13612	13612		120.62	48.744	1	2418400			2502	7501	1566	1576	2520	2520					0.028414737888056152
APVKENIPY	9	Unmodified	_APVKENIPY_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7822265625	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.634	1	30.634	30.134	31.134	0								0	0	0	0.21054	1	11365	11365		49.442	4.9105	1				2503	3751	1567	1577	2521	2521					0.035903405860153725
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2628173828125	2	425.263271	848.511988	0.30906	0.00013143	-1.0585	-0.00045013	-0.74942	-0.0003187	425.26298057909986	25.203	0.15654	25.203	25.119	25.276	0					6	4	2	0	0	0	0.27781	1	7561	7561		52.299	15.271	1	58780			2504	10472	1568	1578	2522	2522					0.08167294111046886
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.26324462890625	2	425.263271	848.511988	-1.0776	-0.00045826	0.74253	0.00031577	-0.33506	-0.00014249	425.2635207375801	25.233	0.19311	25.233	25.158	25.351	0					10	6	2	0	0	0	0.25109	1	7812	7812		55.504	10.973	1	129840			2505	10472	1568	1578	2523	2523					0.08167294111046886
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2630615234375	2	425.263271	848.511988	-0.032538	-1.3837E-05	-0.33904	-0.00014418	-0.37157	-0.00015802	425.26293193428234	25.297	0.23286	25.297	25.21	25.443	0					10	5	3	0	0	0	0.1236	1	8016	8016		73.975	13.681	1	94745			2506	10472	1568	1578	2524	2524					0.08167294111046886
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2627868652344	2	425.263271	848.511988	-2.6761	-0.0011381	2.5286	0.0010753	-0.14756	-6.2751E-05	425.26427523857325	25.29	0.18728	25.29	25.198	25.386	0					8	4	2	0	0	0	0.23186	1	8026	8026		57.811	20.783	1	121150			2507	10472	1568	1578	2525	2525					0.08167294111046886
APVPAVPFPAW	11	Unmodified	_APVPAVPFPAW_					0	0	0			REV__MKRN3|p.A162Gfs*15|1|0.42|ENSG00000179455|chr15:23566257-23566258|-/C|frameshift_variant	REV__MKRN3|p.A162Gfs*15|1|0.42|ENSG00000179455|chr15:23566257-23566258|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.5484313964844	3	384.546449	1150.61752	0.8447	0.00032483	4.4825	0.0017237	5.3272	0.0020485	384.548178396658	22.298	0.23339	22.298	22.251	22.485	0					8	5	3	0	0	0	0.65461	1	7235	7235		20.837	0	1	489580	+		2508	16777	1569	1579	2526	2526					0.048232102366455365
APVPIAAH	8	Unmodified	_APVPIAAH_					0	0	0		nc|ENSG00000143442|Q7Z3K3-4|POGZ;POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000476128.1_1_1:151413368-151414680:-|nuORF;nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-4|POGZ	nc|ENSG00000143442|Q7Z3K3-4|POGZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	388.22662353515625	2	388.226688	774.438824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.601	1	35.601	35.101	36.101	0								0	0	0	1.7419	1	11666	11666		33.493	0	1				2509	4556	1570	1580	2527	2527					0.04258165388409907
APVPKKLLMM	10	Unmodified	_APVPKKLLMM_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000434010.1_1_20:32710701-32710965:+|nuORF;ENST00000479476.1_1_18:68097766-68098228:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.3369140625	2	564.337598	1126.66064	0.13501	7.6193E-05	-0.40966	-0.00023119	-0.27465	-0.000155	564.3372503021588	33.78	2.2394	33.78	33.673	35.912	0					323	99	5	0	0	0	0.64178	1	12010	12010		29.15	4.6304	1	8293200			2510	10454;9597	1571	1581	2528	2528					0.10237940698084458
APVPTGEVY	9	Unmodified	_APVPTGEVY_					0	0	0		CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7398376464844	2	466.739825	931.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.882	1	35.882	35.382	36.382	0								0	0	0	0.29985	1	13937	13937		35.201	3.2459	1				2511	363	1572	1582	2529	2529					-0.0033761023076976926
APWGATLCEAL	11	Unmodified	_APWGATLCEAL_					0	0	0		ENST00000255641.12_1_19:1980198-1980525:+|nuORF	ENST00000255641.12_1_19:1980198-1980525:+|nuORF	ENST00000255641.12_1_19:1980198-1980525:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.2822875976562	2	566.278792	1130.54303	3.4701	0.0019651	3.4371	0.0019464	6.9072	0.0039114	566.2805720492989	39.908	0.18903	39.908	39.813	40.002	0					7	4	2	0	0	0	0.64562	1	15818	15818		32.812	1.2826	1	186420			2512	8259	1573	1583	2530	2530					-0.01701920637060539
APWPVSCSTST	11	Unmodified	_APWPVSCSTST_					0	0	0		ENST00000534603.5_1_11:770899-773566:-|nuORF	ENST00000534603.5_1_11:770899-773566:-|nuORF	ENST00000534603.5_1_11:770899-773566:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.2587890625	2	568.258056	1134.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.138	1	13.138	12.638	13.638	0								0	0	0	0.45674	1	2677	2677		6.3127	1.2258	1				2513	10473	1574	1584	2531	2531					-0.06031101396365557
AQAALQAQQPR	11	Unmodified	_AQAALQAQQPR_					0	0	0		nc|ENSG00000106290|P49848-2|TAF6	nc|ENSG00000106290|P49848-2|TAF6	nc|ENSG00000106290|P49848-2|TAF6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.3239135742188	2	591.322911	1180.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.02	1	43.02	42.52	43.52	0								0	0	0	0.36657	1	14122	14122		42.864	6.4175	1				2514	11471	1575	1585	2532	2532					0.04817835997801012
AQAELQHVLG	10	Unmodified	_AQAELQHVLG_					0	0	0		ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	355.8612060546875	3	355.861096	1064.56146	-2.0177	-0.00071801	1.9069	0.00067859	-0.11077	-3.942E-05	355.86189926275307	19.647	0.18088	19.647	19.562	19.743	0					8	4	3	0	0	0	0.38194	1	5386	5386		58.23	16.803	1	210070			2515	4004	1576	1586	2533	2533					0.031759573291765264
AQAESLRYK	9	Unmodified	_AQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;RPS3|p.L110I|1|0.35|ENSG00000149273|chr11:75402424-75402424|C/A|missense_variant	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2880249023438	2	533.288005	1064.56146	0.44344	0.00023648	0.52766	0.0002814	0.9711	0.00051788	533.2883514855338	19.561	0.18666	19.561	19.486	19.673	0					12	5	3	0	0	0	0.010427	1	5067	5067		124.08	15.993	1	811220			2516	4873	1577	1587	2534	2534					0.031759573291765264
AQAESLRYK	9	Unmodified	_AQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;RPS3|p.L110I|1|0.35|ENSG00000149273|chr11:75402424-75402424|C/A|missense_variant	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.287841796875	2	533.288005	1064.56146	0.13913	7.4194E-05	0.1732	9.2364E-05	0.31232	0.00016656	533.288139526844	19.911	0.34186	19.911	19.811	20.153	0					18	7	3	0	0	0	0.0040239	1	6077	6077		159.28	54.529	1	4041800			2517	4873	1577	1587	2535	2535					0.031759573291765264
AQAESLRYK	9	Unmodified	_AQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;RPS3|p.L110I|1|0.35|ENSG00000149273|chr11:75402424-75402424|C/A|missense_variant	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2889404296875	2	533.288005	1064.56146	0.2429	0.00012953	0.60374	0.00032197	0.84664	0.0004515	533.2883825920832	19.583	0.20029	19.583	19.505	19.706	0					9	6	2	0	0	0	0.032181	1	5319	5319		112.41	32.698	1	623150			2518	4873	1577	1587	2536	2536					0.031759573291765264
AQAESLRYK	9	Unmodified	_AQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;RPS3|p.L110I|1|0.35|ENSG00000149273|chr11:75402424-75402424|C/A|missense_variant	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2885131835938	2	533.288005	1064.56146	0.28961	0.00015445	0.52092	0.0002778	0.81054	0.00043225	533.2882844580984	19.749	0.26849	19.749	19.693	19.961	0					15	5	4	0	0	0	0.0019365	1	6305	6305		172.25	79.053	1	2287800			2519	4873	1577	1587	2537	2537					0.031759573291765264
AQAGARHAQR	10	Unmodified	_AQAGARHAQR_					0	0	0			REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.86102294921875	3	355.860201	1064.55877	1.4383	0.00051184	0.80086	0.00028499	2.2392	0.00079683	355.8605120054538	19.766	0.36979	19.766	19.659	20.028	0					18	7	4	0	0	0	0.39827	1	6314	6314		56.434	56.434	1	2917000	+		2520	12530	1578	1588	2538	2538					0.029075467148913958
AQAGARHAQR	10	Unmodified	_AQAGARHAQR_					0	0	0			REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	REV__CNNM2|p.W228Vfs*183|1|0.44|ENSG00000148842|chr10:102919155-102919156|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2882690429688	2	533.286663	1064.55877	3.395	0.0018105	-0.52506	-0.00028001	2.8699	0.0015305	533.286421201991	19.816	0.22091	19.816	19.706	19.927	0					12	4	4	0	0	0	0.11048	1	6182	6182		93.195	93.195	1	883800	+		2521	12530	1578	1588	2539	2539					0.029075467148913958
AQAGSLVAVF	10	Unmodified	_AQAGSLVAVF_					0	0	0			REV__PCDHGA8|p.L712Sfs*33|1|0.15|ENSG00000253767|chr5:141394944-141394945|-/T|frameshift_variant	REV__PCDHGA8|p.L712Sfs*33|1|0.15|ENSG00000253767|chr5:141394944-141394945|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7684631347656	2	481.768917	961.523281	-0.54919	-0.00026458	0.28855	0.00013901	-0.26064	-0.00012557	481.76909279549966	32.653	0.57428	32.653	32.343	32.917	0					42	14	4	0	0	0	0.58896	1	12520	12520		35.618	0	1	1009200	+		2522	21346	1579	1589	2540	2540					0.04098071414523474
AQAILVPEPP	10	Unmodified	_AQAILVPEPP_					0	0	0		ENST00000494373.1_1_2:54014347-54015815:+|nuORF	ENST00000494373.1_1_2:54014347-54015815:+|nuORF	ENST00000494373.1_1_2:54014347-54015815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2998657226562	2	517.797675	1033.5808	1.8906	0.00097893	-1.0658	-0.00055185	0.82481	0.00042709	517.797097062309	38.318	0.26039	38.318	38.194	38.455	0					27	9	4	0	0	0	0.44292	1	14521	14521		47.657	8.4045	1	603350			2523	10098	1580	1590	2541	2541					0.06534913620089355
AQAKIDRYT	9	Unmodified	_AQAKIDRYT_					0	0	0		ENSG00000120254|ENST00000367321|MTHFD1L;ESR1-MTHFD1L|2|fusion;ESR1-MTHFD1L|1|fusion	ENSG00000120254|ENST00000367321|MTHFD1L	ENSG00000120254|ENST00000367321|MTHFD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	355.8607482910156	3	355.861096	1064.56146	-0.87855	-0.00031264	0.38423	0.00013673	-0.49433	-0.00017591	355.86120864083074	19.58	0.14246	19.58	19.517	19.66	0					9	4	3	0	0	0	0.4966	1	5324	5324		32.812	1.2826	1	159280			2524	3164	1581	1591	2542	2542					0.031759573291765264
AQAPLPPQVLR	11	Unmodified	_AQAPLPPQVLR_					0	0	0		ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENST00000488384.1_1_20:34144716-34145272:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.3545532226562	2	595.356222	1188.69789	-1.816	-0.0010812	-0.40843	-0.00024316	-2.2244	-0.0013243	595.3558797901164	15.04	0.066007	15.04	15.007	15.073	0					4	2	2	0	0	0	0.78104	1	3301	3301		19.104	12.368	1	77244			2525	10046	1582	1592	2543	2543					0.11109071559690165
AQAPTKQPPQ	10	Unmodified	_AQAPTKQPPQ_					0	0	0		CHRM1|p.R320Q|1|0.36|ENSG00000168539|chr11:62910142-62910142|C/T|missense_variant	CHRM1|p.R320Q|1|0.36|ENSG00000168539|chr11:62910142-62910142|C/T|missense_variant	CHRM1|p.R320Q|1|0.36|ENSG00000168539|chr11:62910142-62910142|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.86102294921875	3	355.861096	1064.56146	0.48869	0.00017391	-0.72069	-0.00025646	-0.23199	-8.2558E-05	355.8608358894847	19.911	0.29934	19.911	19.811	20.11	0					9	6	2	0	0	0	0.45669	1	6103	6103		50.034	9.2553	1	710670			2526	537	1583	1593	2544	2544					0.031759573291765264
AQAQEVFFLK	10	Unmodified	_AQAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.3247680664062	2	590.821681	1179.62881	0.22452	0.00013265	0.36017	0.0002128	0.58469	0.00034544	590.8218822046217	43.265	0.17191	43.265	43.181	43.353	0					25	10	3	0	0	0	0.45669	1	16323	16323		50.034	21.952	1	177100			2527	6220	1584	1594	2545	2545					0.04617987540109425
AQAQEVFFLK	10	Unmodified	_AQAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.8223266601562	2	590.821681	1179.62881	1.4994	0.00088589	0.078862	4.6594E-05	1.5783	0.00093248	590.8216696713662	43.226	0.25261	43.226	43.131	43.384	0					29	14	3	0	0	0	0.13663	1	16910	16910		89.029	30.799	1	245890			2528	6220	1584	1594	2546	2546					0.04617987540109425
AQAQEVFFLK	10	Unmodified	_AQAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	590.8223266601562	2	590.821681	1179.62881	-1.7743	-0.0010483	3.5447	0.0020943	1.7704	0.001046	590.8241820616239	43.028	0.124	43.028	42.951	43.075	0					11	7	2	0	0	0	0.46128	1	14968	14968		49.536	0.094497	1	44922			2529	6220	1584	1594	2547	2547					0.04617987540109425
AQAQEVFFLK	10	Unmodified	_AQAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.3234252929688	2	590.821681	1179.62881	1.3033	0.00077002	-0.26354	-0.0001557	1.0398	0.00061432	590.8215035176161	43.151	0.32535	43.151	43.067	43.392	0					22	11	3	0	0	0	0.28855	1	17254	17254		68.626	29.872	1	429600			2530	6220	1584	1594	2548	2548					0.04617987540109425
AQAQPFGSK	9	Unmodified	_AQAQPFGSK_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2427978515625	2	467.243067	932.47158	0.65087	0.00030411	-1.059	-0.00049479	-0.40809	-0.00019068	467.2424959710457	20.419	0.31552	20.419	20.314	20.629	0					11	6	3	0	0	0	0.10506	1	6626	6626		78.264	21.543	1	1033300			2531	2927	1585	1595	2549	2549					0.0026432772061752985
AQAQPFGSK	9	Unmodified	_AQAQPFGSK_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2433166503906	2	467.243067	932.47158	-0.50592	-0.00023639	0.30156	0.0001409	-0.20437	-9.5489E-05	467.2431611860254	20.452	0.21749	20.452	20.294	20.511	0					7	4	2	0	0	0	0.16806	1	6487	6487		65.465	1.2581	1	269500			2532	2927	1585	1595	2550	2550					0.0026432772061752985
AQAQPFGSK	9	Unmodified	_AQAQPFGSK_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.242919921875	2	467.243067	932.47158	0.62073	0.00029003	-0.85652	-0.0004002	-0.23579	-0.00011017	467.2426698867585	20.435	0.26364	20.435	20.328	20.591	0					9	5	2	0	0	0	0.095583	1	6500	6500		80.455	20.161	1	1198100			2533	2927	1585	1595	2551	2551					0.0026432772061752985
AQAQQQFL	8	Unmodified	_AQAQQQFL_					0	0	0			REV__CCDC15|p.E164K|1|0.56|ENSG00000149548|chr11:124959977-124959977|G/A|missense_variant	REV__CCDC15|p.E164K|1|0.56|ENSG00000149548|chr11:124959977-124959977|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2434387207031	2	467.243067	932.47158	-0.70595	-0.00032985	0.60004	0.00028036	-0.10591	-4.9486E-05	467.24353599011965	20.271	0.19302	20.271	20.173	20.366	0					6	4	2	0	0	0	0.39542	1	5679	5679		71.378	0	1	80529	+		2534	12358	1586	1596	2552	2552					0.0026432772061752985
AQARELMKML	10	Unmodified	_AQARELMKML_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.5511779785156	3	397.550988	1189.63113	0.67037	0.00026651	-0.99644	-0.00039614	-0.32607	-0.00012963	397.55087255594697	28.421	0.3082	28.421	28.224	28.532	0					19	6	5	0	0	0	0.35046	1	10403	10403		61.691	3.4614	1	1428300			2535	4489	1587	1597	2553	2553					0.043903766819312295
AQARLSRVAP	10	Unmodified	_AQARLSRVAP_					0	0	0			REV__tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	REV__tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.8805236816406	3	356.880602	1067.61998	0.71796	0.00025623	-0.90677	-0.00032361	-0.18881	-6.7384E-05	356.88024749925506	14.329	0.28267	14.329	14.223	14.505	0					10	7	2	0	0	0	0.66185	1	3469	3469		25.126	8.4086	1	142730	+		2536	21716	1588	1598	2554	2554					0.08887058694313055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2700500488281	2	481.768917	961.523281	0.077922	3.754E-05	-1.3747	-0.0006623	-1.2968	-0.00062476	481.76855217338846	32.399	0.51053	32.399	32.114	32.625	0					54	22	4	0	0	0	0.22837	3	10467	10419;10466;10467		58.23	8.7884	1	351230			2537	1887	1589	1599	2555;2556;2557	2557					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.76861572265625	2	481.768917	961.523281	-0.11673	-5.6238E-05	-1.3652	-0.00065771	-1.4819	-0.00071394	481.76876249945775	32.653	0.80638	32.653	32.212	33.019	0					63	20	6	0	0	0	0.15163	1	11942	11942		67.494	23.377	1	1824200			2538	1887	1589	1599	2558	2558					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.76885986328125	2	481.768917	961.523281	-1.3288	-0.00064018	0.82949	0.00039962	-0.49932	-0.00024056	481.769508603467	32.444	0.60582	32.444	32.139	32.745	0					64	25	4	0	0	0	0.36892	1	10757	10757		44.377	8.7589	1	481020			2539	1887	1589	1599	2559	2559					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2700500488281	2	481.768917	961.523281	-0.42178	-0.0002032	0.5111	0.00024623	0.089326	4.3034E-05	481.7690261539796	32.446	0.34495	32.446	32.288	32.632	0					31	14	3	0	0	0	0.27249	1	10778	10778		52.937	6.9645	1	191160			2540	1887	1589	1599	2560	2560					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.76873779296875	2	481.768917	961.523281	0.68861	0.00033175	-1.923	-0.00092646	-1.2344	-0.00059471	481.7684421870246	32.601	1.1436	32.601	32.126	33.269	0					78	27	6	0	0	0	0.078509	1	12350	12350		85.161	27.35	1	2666800			2541	1887	1589	1599	2561	2561					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7685546875	2	481.768917	961.523281	-0.54919	-0.00026458	0.28855	0.00013901	-0.26064	-0.00012557	481.76909279549966	32.653	0.57428	32.653	32.343	32.917	0					42	14	4	0	0	0	0.36892	1	12338	12338		44.377	7.2181	1	1009200			2542	1887	1589	1599	2562	2562					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.76849365234375	2	481.768917	961.523281	0.90557	0.00043628	-0.63207	-0.00030451	0.2735	0.00013176	481.7686621698099	32.646	0.57046	32.646	32.253	32.823	0					27	11	3	0	0	0	0.30841	1	12303	12303		49.536	7.0616	1	336350			2543	1887	1589	1599	2563	2563					0.040980714145121055
AQATVHVVK	9	Unmodified	_AQATVHVVK_					0	0	0		ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7815856933594	2	476.782359	951.550165	-0.13	-6.198E-05	-0.89132	-0.00042497	-1.0213	-0.00048695	476.7819880806054	17.655	0.11359	17.655	17.579	17.693	0					9	3	3	0	0	0	0.026848	1	4244	4244		112.11	55.386	1	496150			2544	9488	1590	1600	2564	2564					0.07245180025711306
AQATVHVVK	9	Unmodified	_AQATVHVVK_					0	0	0		ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.78204345703125	2	476.782359	951.550165	-0.36169	-0.00017245	-0.69081	-0.00032937	-1.0525	-0.00050181	476.7822687298872	17.983	0.32643	17.983	17.883	18.209	0					10	7	2	0	0	0	0.015496	1	5185	5185		129.42	44.26	1	3670800			2545	9488	1590	1600	2565	2565					0.07245180025711306
AQATVHVVK	9	Unmodified	_AQATVHVVK_					0	0	0		ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7821044921875	2	476.782359	951.550165	-0.40993	-0.00019545	0.48719	0.00023228	0.077265	3.6839E-05	476.7824990378321	17.686	0.14919	17.686	17.614	17.763	0					7	4	2	0	0	0	0.015496	1	4487	4487		129.42	39.051	1	362340			2546	9488	1590	1600	2566	2566					0.07245180025711306
AQATVHVVK	9	Unmodified	_AQATVHVVK_					0	0	0		ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7820739746094	2	476.782359	951.550165	-0.39291	-0.00018733	0.20294	9.6758E-05	-0.18997	-9.0575E-05	476.7824750534893	17.93	0.2684	17.93	17.87	18.139	0					9	5	3	0	0	0	0.04067	1	5424	5424		98.582	34.375	1	1649700			2547	9488	1590	1600	2567	2567					0.07245180025711306
AQATVLHLK	9	Unmodified	_AQATVLHLK_					0	0	0		ENST00000430644.5_1_4:728709-759864:+|nuORF;ENST00000440452.5_1_4:728709-759864:+|nuORF;ENSG00000185619|ENST00000362003|PCGF3;nc|ENSG00000185619|Q3KNV8-2|PCGF3	ENST00000430644.5_1_4:728709-759864:+|nuORF	ENST00000430644.5_1_4:728709-759864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.79779052734375	2	490.798009	979.581465	-1.3038	-0.00063989	1.4612	0.00071715	0.15741	7.7255E-05	490.79853421467016	24.259	0.11171	24.259	24.201	24.313	0					5	3	2	0	0	0	0.47473	1	7415	7415		35.152	0.97948	1	47699			2548	9491	1591	1601	2568	2568					0.09085753059798662
AQCHANSL	8	Unmodified	_AQCHANSL_					0	0	0		ENSG00000152990|ENST00000334304|ADGRA3;nc|ENSG00000152990|Q8IWK6-3|ADGRA3	ENSG00000152990|ENST00000334304|ADGRA3	ENSG00000152990|ENST00000334304|ADGRA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.6928405761719	2	422.192519	842.370486	-0.20503	-8.6564E-05	1.9287	0.00081429	1.7237	0.00072773	422.19558424014747	42.64	0.68548	42.64	42.347	43.032	0					96	42	3	0	0	0	0.79719	1	13494	13494		18.324	1.6194	1	160220			2549	5029	1592	1602	2569	2569					-0.0570044725373009
AQDKSVVNK	9	Unmodified	_AQDKSVVNK_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ICA1|p.N204Tfs*5|2|0.36|ENSG00000003147|chr7:8158621-8158621|T/-|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7748107910156	2	494.774731	987.534909	0.74754	0.00036987	0.92633	0.00045833	1.6739	0.00082819	494.7741623081128	13.431	0.12792	13.431	13.34	13.468	0					9	3	4	0	0	0	0.015992	1	3044	3044		128.6	32.787	1	402350			2550	934	1593	1603	2570	2570					0.040642684378553895
AQDKSVVNK	9	Unmodified	_AQDKSVVNK_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ICA1|p.N204Tfs*5|2|0.36|ENSG00000003147|chr7:8158621-8158621|T/-|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.77459716796875	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.201	1	13.201	12.701	13.701	0								0	0	0	0.33579	1	2698	2698		28.081	5.039	1				2551	934	1593	1603	2571	2571					0.040642684378553895
AQDKSVVNK	9	Unmodified	_AQDKSVVNK_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ICA1|p.N204Tfs*5|2|0.36|ENSG00000003147|chr7:8158621-8158621|T/-|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7746276855469	2	494.774731	987.534909	-0.043434	-2.149E-05	-0.023423	-1.1589E-05	-0.066857	-3.3079E-05	494.7747668954016	13.398	0.14437	13.398	13.348	13.493	0					5	3	2	0	0	0	0.0059092	1	3262	3262		154.12	55.489	1	310940			2552	934	1593	1603	2572	2572					0.040642684378553895
AQDKSVVNK	9	Unmodified	_AQDKSVVNK_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ICA1|p.N204Tfs*5|2|0.36|ENSG00000003147|chr7:8158621-8158621|T/-|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7744140625	2	494.774731	987.534909	-0.65163	-0.00032241	3.0564	0.0015122	2.4047	0.0011898	494.77508819982665	13.368	0.14753	13.368	13.306	13.453	0					9	3	4	0	0	0	0.0047071	1	3089	3089		159.28	71.579	1	194940			2553	934	1593	1603	2573	2573					0.040642684378553895
AQDLVDILQ	9	Unmodified	_AQDLVDILQ_					0	0	0		ENSG00000129355|ENST00000393599|CDKN2D	ENSG00000129355|ENST00000393599|CDKN2D	ENSG00000129355|ENST00000393599|CDKN2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2776794433594	2	507.776939	1013.53933	0.94452	0.0004796	-1.8405	-0.00093457	-0.896	-0.00045497	508.2766096911081	36.582	0.31042	36.582	36.43	36.74	0					10	8	2	0	0	0	0.098791	1	13814	13814		79.713	5.4575	1	52751			2554	3596	1594	1604	2574	2574					0.033097328607595955
AQEAPLEGT	9	Unmodified	_AQEAPLEGT_					0	0	0			REV__USP9X|p.N1480T|1|0.17|ENSG00000124486|chrX:41198586-41198586|A/C|missense_variant	REV__USP9X|p.N1480T|1|0.17|ENSG00000124486|chrX:41198586-41198586|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.22442626953125	2	458.224539	914.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.111	1	15.111	14.611	15.611	0								0	0	0	0.31623	1	3223	3223		31.955	1.4512	1		+		2555	22270	1595	1605	2575	2575					-0.026113886158100286
AQEDEEPEWR	10	Unmodified	_AQEDEEPEWR_					0	0	0		ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	644.774658203125	2	644.775656	1287.53676	-0.56129	-0.00036191	-1.7919	-0.0011554	-2.3532	-0.0015173	644.7745808415945	30.941	0.10148	30.941	30.88	30.982	0					4	2	2	0	0	0	0.64162	1	11622	11622		29.17	2.4771	1	68136			2556	1088	1596	1606	2576	2576					-0.09550767334872035
AQENVKVVY	9	Unmodified	_AQENVKVVY_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;ITSN1|p.P1076Tfs*2|1|0.25|ENSG00000205726|chr21:33826852-33826853|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.285888671875	2	525.284931	1048.55531	1.1668	0.00061291	0.20306	0.00010666	1.3699	0.00071957	525.2850561498965	32.931	0.1927	32.931	32.85	33.043	0					7	5	2	0	0	0	0.21263	1	11500	11500		44.117	3.5442	1	123130		+	2557	7757	1597	1607	2577	2577					0.03297439097673305
AQFGGKILRK	10	Unmodified	_AQFGGKILRK_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.84765625	2	559.345658	1116.67676	1.2865	0.0007196	-0.68018	-0.00038046	0.60633	0.00033915	559.3452290757423	21.481	0.13858	21.481	21.406	21.544	0					12	6	2	0	0	0	0.43008	1	5918	5918		52.937	20.124	1	141000			2558	1442	1598	1608	2578	2578					0.12309106250836521
AQFGGKILRK	10	Unmodified	_AQFGGKILRK_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.23297119140625	3	373.232864	1116.67676	0.78788	0.00029406	-0.82971	-0.00030968	-0.041837	-1.5615E-05	373.2326054723443	21.784	0.56975	21.784	21.696	22.265	0					28	13	3	0	0	0	0.61187	1	6985	6985		45.022	13.067	1	3584100			2559	1442	1598	1608	2579	2579					0.12309106250836521
AQFGGKILRK	10	Unmodified	_AQFGGKILRK_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3460693359375	2	559.345658	1116.67676	0.51419	0.00028761	0.23053	0.00012895	0.74472	0.00041656	559.3458161604591	21.775	0.30489	21.775	21.726	22.031	0					18	7	4	0	0	0	0.065649	1	6978	6978		104.06	37.628	1	1138600			2560	1442	1598	1608	2580	2580					0.12309106250836521
AQFGGKILRK	10	Unmodified	_AQFGGKILRK_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3460083007812	2	559.345658	1116.67676	-0.45716	-0.00025571	1.4361	0.0008033	0.97898	0.00054759	559.3462369244886	21.514	0.13012	21.514	21.441	21.571	0					8	4	3	0	0	0	0.2978	1	6192	6192		67.494	29.682	1	103970			2561	1442	1598	1608	2581	2581					0.12309106250836521
AQFGGKILRK	10	Unmodified	_AQFGGKILRK_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3466186523438	2	559.345658	1116.67676	-0.10033	-5.6117E-05	0.67381	0.00037689	0.57349	0.00032078	559.3459000228817	21.7	0.26596	21.7	21.592	21.858	0					11	5	3	0	0	0	0.12896	1	7226	7226		90.37	29.398	1	855120			2562	1442	1598	1608	2582	2582					0.12309106250836521
AQFGGKILRK	10	Unmodified	_AQFGGKILRK_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.23284912109375	3	373.232864	1116.67676	-0.12033	-4.4912E-05	0.31893	0.00011904	0.1986	7.4124E-05	373.2329892620961	21.578	0.33757	21.578	21.482	21.82	0					14	8	2	0	0	0	0.66185	1	6288	6288		38.754	0.94209	1	118570			2563	1442	1598	1608	2583	2583					0.12309106250836521
AQFGGKILRK	10	Unmodified	_AQFGGKILRK_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2328186035156	3	373.232864	1116.67676	-0.32213	-0.00012023	0.12363	4.6143E-05	-0.19849	-7.4084E-05	373.2328534902717	21.696	0.41422	21.696	21.539	21.953	0					19	8	3	0	0	0	0.63224	1	7112	7112		42.338	8.4164	1	1712300			2564	1442	1598	1608	2584	2584					0.12309106250836521
AQFKIDSV	8	Unmodified	_AQFKIDSV_					0	0	0			REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF	REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.24737548828125	2	454.247818	906.481082	0.721	0.00032751	-1.5326	-0.00069619	-0.81161	-0.00036867	454.2469659413802	30.941	0.18944	30.941	30.854	31.044	0					6	4	2	0	0	0	0.65148	1	11633	11633		40.778	5.1599	1	202090	+		2565	17690	1599	1609	2585	2585					0.02410096006144613
AQFLESFLQ	9	Unmodified	_AQFLESFLQ_					0	0	0		ENSG00000130997|ENST00000511885|POLN;ENST00000503601.1_1_4:2083186-2091962:-|nuORF;ENST00000514858.5_1_4:2082849-2194957:-|nuORF	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.7803955078125	2	541.779482	1081.54441	0.29889	0.00016193	0.59188	0.00032067	0.89077	0.0004826	541.7797322366768	44.086	0.22491	44.086	43.998	44.223	0					25	13	3	0	0	0	0.28897	1	16582	16582		51.193	0	1	224190			2566	3688	1600	1610	2586	2586					0.0069003672338112665
AQFRKAQL	8	Unmodified	_AQFRKAQL_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2813415527344	2	481.282526	960.550499	-0.53156	-0.00025583	-1.1093	-0.00053386	-1.6408	-0.00078969	481.28175115295096	41.173	0.099228	41.173	41.12	41.22	0					5	3	2	0	0	0	0.59411	1	16191	16191		50.025	2.3672	1	74309	+		2567	13250	1601	1611	2587	2587					0.06864599745563282
AQFRQPLKK	9	Unmodified	_AQFRQPLKK_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19332177-19336426:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.3382568359375	2	558.337833	1114.66111	1.1194	0.00062499	-0.47904	-0.00026746	0.64035	0.00035753	558.3374873983497	18.259	0.24467	18.259	18.101	18.346	0					13	6	3	0	0	0	0.20551	1	4717	4717		60.972	0.85368	1	106360			2568	772	1602	1612	2588	2588					0.1083681973379953
AQGAVFLGK	9	Unmodified	_AQGAVFLGK_					0	0	0		ENST00000477582.1_1_3:185155245-185161425:+|nuORF;ENST00000433092.5_1_3:185155245-185169222:+|nuORF;MAP3K13|p.V334Lfs*14|1|0.29|ENSG00000073803|chr3:185447932-185447932|A/-|frameshift_variant;MAP3K13|p.P645Lfs*19|1|0.35|ENSG00000073803|chr3:185473261-185473261|C/-|frameshift_variant;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.7581787109375	2	445.758352	889.502152	0.59881	0.00026693	0.16315	7.2726E-05	0.76197	0.00033965	445.7584836414475	29.448	0.38115	29.448	29.364	29.745	0					16	9	2	0	0	0	0.1115	1	10531	10531		76.774	13.468	1	282620			2569	1517	1603	1613	2589	2589					0.05298106105669831
AQGAVFLGK	9	Unmodified	_AQGAVFLGK_					0	0	0		ENST00000477582.1_1_3:185155245-185161425:+|nuORF;ENST00000433092.5_1_3:185155245-185169222:+|nuORF;MAP3K13|p.V334Lfs*14|1|0.29|ENSG00000073803|chr3:185447932-185447932|A/-|frameshift_variant;MAP3K13|p.P645Lfs*19|1|0.35|ENSG00000073803|chr3:185473261-185473261|C/-|frameshift_variant;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.7579650878906	2	445.758352	889.502152	-0.17325	-7.7229E-05	0.3181	0.0001418	0.14485	6.4567E-05	445.7585508098567	29.482	0.3492	29.482	29.334	29.683	0					13	7	2	0	0	0	0.034359	1	10911	10911		104.75	30.772	1	164540			2570	1517	1603	1613	2590	2590					0.05298106105669831
AQGAVFLGK	9	Unmodified	_AQGAVFLGK_					0	0	0		ENST00000477582.1_1_3:185155245-185161425:+|nuORF;ENST00000433092.5_1_3:185155245-185169222:+|nuORF;MAP3K13|p.V334Lfs*14|1|0.29|ENSG00000073803|chr3:185447932-185447932|A/-|frameshift_variant;MAP3K13|p.P645Lfs*19|1|0.35|ENSG00000073803|chr3:185473261-185473261|C/-|frameshift_variant;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.7593688964844	2	445.758352	889.502152	0.46903	0.00020907	0.39585	0.00017645	0.86488	0.00038553	445.7583911001567	29.278	0.13687	29.278	29.148	29.285	0					5	3	2	0	0	0	0.37197	1	9819	9819		44.117	3.5442	1	26986			2571	1517	1603	1613	2591	2591					0.05298106105669831
AQGAVFLGK	9	Unmodified	_AQGAVFLGK_					0	0	0		ENST00000477582.1_1_3:185155245-185161425:+|nuORF;ENST00000433092.5_1_3:185155245-185169222:+|nuORF;MAP3K13|p.V334Lfs*14|1|0.29|ENSG00000073803|chr3:185447932-185447932|A/-|frameshift_variant;MAP3K13|p.P645Lfs*19|1|0.35|ENSG00000073803|chr3:185473261-185473261|C/-|frameshift_variant;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	ENST00000477582.1_1_3:185155245-185161425:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.7581481933594	2	445.758352	889.502152	-0.45423	-0.00020248	1.2622	0.00056261	0.80792	0.00036014	445.759233721271	29.416	0.40673	29.416	29.258	29.664	0					10	8	2	0	0	0	0.071197	1	10763	10763		87.754	21.951	1	177660			2572	1517	1603	1613	2592	2592					0.05298106105669831
AQGEPKVYN	9	Unmodified	_AQGEPKVYN_					0	0	0		SLC25A19|p.T164Pfs*19|1|0.3|ENSG00000125454|chr17:75278306-75278306|C/-|frameshift_variant;ENSG00000125454|ENST00000416858|SLC25A19	SLC25A19|p.T164Pfs*19|1|0.3|ENSG00000125454|chr17:75278306-75278306|C/-|frameshift_variant	SLC25A19|p.T164Pfs*19|1|0.3|ENSG00000125454|chr17:75278306-75278306|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2618408203125	2	503.253631	1004.49271	0.074894	3.7691E-05	0.75928	0.00038211	0.83417	0.0004198	503.25396441417814	32.143	0.53303	32.143	31.81	32.343	0					27	11	4	0	0	0	0.50858	1	12119	12119		31.53	2.3598	1	400550			2573	3416	1604	1614	2593	2593					-0.009357069705288268
AQGGPGWFAQ	10	Unmodified	_AQGGPGWFAQ_					0	0	0			REV__nc|ENSG00000151651|P78325-2|ADAM8	REV__nc|ENSG00000151651|P78325-2|ADAM8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.74139404296875	2	509.740691	1017.46683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.989	1	16.989	16.489	17.489	0								0	0	0	0.3639	1	4171	4171		40.778	2.9666	1		+		2574	15485	1605	1615	2594	2594					-0.04120556422151367
AQGKDAYELE	10	Unmodified	_AQGKDAYELE_					0	0	0		nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP;ENSG00000133030|ENST00000651222|MPRIP	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.2658081054688	2	562.266936	1122.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.371	1	20.371	19.871	20.871	0								0	0	0	0.4201	1	5716	5716		20.947	0	1				2575	3832	1606	1616	2595	2595					-0.03704062869860536
AQGLAQSLQ	9	Unmodified	_AQGLAQSLQ_					0	0	0			REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2478942871094	2	458.248349	914.482145	-2.6431	-0.0012112	2.0534	0.00094095	-0.58969	-0.00027023	458.2491120668158	17.827	0.28284	17.827	17.672	17.955	0					13	6	3	0	0	0	0.41113	1	4514	4514		40.778	2.9666	1	102030	+		2576	14815	1607	1617	2596	2596					0.021483103750597365
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2774047851562	2	515.277441	1028.54033	0.183	9.4298E-05	-0.0020547	-1.0587E-06	0.18095	9.3239E-05	515.2773749600068	20.131	0.28687	20.131	20.023	20.31	0					21	9	4	0	0	0	0.0097668	1	5325	5325		152.47	75.696	1	1181100			2577	4521	1608	1618	2597	2597					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2777709960938	2	515.277441	1028.54033	0.028236	1.4549E-05	0.52378	0.00026989	0.55201	0.00028444	515.2777060773924	20.472	0.55832	20.472	20.373	20.931	0					20	12	2	0	0	0	0.0067848	1	6346	6346		148.04	62.683	1	5831700			2578	4521	1608	1618	2598	2598					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.8540344238281	3	343.854053	1028.54033	0.50588	0.00017395	-0.49785	-0.00017119	0.0080336	2.7624E-06	343.8538792143885	20.472	0.28234	20.472	20.373	20.655	0					17	6	4	0	0	0	0.22837	1	6367	6367		58.23	12.258	1	1439500			2579	4521	1608	1618	2599	2599					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.8541564941406	3	343.854053	1028.54033	-0.7589	-0.00026095	0.60382	0.00020763	-0.15508	-5.3324E-05	343.85429847513603	20.157	0.21655	20.157	20.085	20.302	0					13	7	3	0	0	0	0.38666	1	5589	5589		42.864	10.052	1	357320			2580	4521	1608	1618	2600	2600					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2776489257812	2	515.277441	1028.54033	0.058069	2.9922E-05	0.49862	0.00025693	0.55669	0.00028685	515.2776873104939	20.183	0.25183	20.183	20.074	20.326	0					18	8	3	0	0	0	0.022525	1	5571	5571		113.41	55.6	1	1274600			2581	4521	1608	1618	2601	2601					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2774658203125	2	515.277441	1028.54033	-0.50006	-0.00025767	0.5666	0.00029196	0.066545	3.4289E-05	515.2776905363057	20.404	0.51684	20.404	20.297	20.813	0					22	10	4	0	0	0	3.4569E-05	1	6592	6592		201.49	91.151	1	5957500			2582	4521	1608	1618	2602	2602					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.853759765625	3	343.854053	1028.54033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.245	1	20.245	19.745	20.745	0								0	0	0	0.24544	1	5656	5656		44.377	1.981	1				2583	4521	1608	1618	2603	2603					0.027199920203202055
AQGPSSQLK	9	Unmodified	_AQGPSSQLK_					0	0	0		ENST00000349792.9_1_1:151171082-151171205:+|nuORF	ENST00000349792.9_1_1:151171082-151171205:+|nuORF	ENST00000349792.9_1_1:151171082-151171205:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.24822998046875	2	458.248349	914.482145	-0.64536	-0.00029574	0.10554	4.8366E-05	-0.53982	-0.00024737	458.24842833362715	18.076	0.44939	18.076	17.804	18.254	0					21	10	4	0	0	0	0.14578	1	5210	5210		68.846	12.412	1	738850			2584	8771	1609	1619	2604	2604					0.02148310375048368
AQGPSSQLK	9	Unmodified	_AQGPSSQLK_					0	0	0		ENST00000349792.9_1_1:151171082-151171205:+|nuORF	ENST00000349792.9_1_1:151171082-151171205:+|nuORF	ENST00000349792.9_1_1:151171082-151171205:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2488098144531	2	458.248349	914.482145	-1.1271	-0.00051651	0.80551	0.00036912	-0.32163	-0.00014738	458.2490993290631	17.777	0.25472	17.777	17.614	17.869	0					10	7	2	0	0	0	0.42902	1	4508	4508		39.253	0.44669	1	88515			2585	8771	1609	1619	2605	2605					0.02148310375048368
AQGPSSQLK	9	Unmodified	_AQGPSSQLK_					0	0	0		ENST00000349792.9_1_1:151171082-151171205:+|nuORF	ENST00000349792.9_1_1:151171082-151171205:+|nuORF	ENST00000349792.9_1_1:151171082-151171205:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.24853515625	2	458.248349	914.482145	-0.68627	-0.00031448	0.4754	0.00021785	-0.21087	-9.6632E-05	458.2485457921631	18.024	0.37035	18.024	17.819	18.19	0					16	7	3	0	0	0	0.28897	1	5450	5450		51.193	11.94	1	568580			2586	8771	1609	1619	2606	2606					0.02148310375048368
AQGQSASLLAE	11	Unmodified	_AQGQSASLLAE_					0	0	0		ENSG00000124920|ENST00000278836|MYRF	ENSG00000124920|ENST00000278836|MYRF	ENSG00000124920|ENST00000278836|MYRF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7771606445312	2	537.774928	1073.5353	1.8873	0.0010149	0.67912	0.00036521	2.5664	0.0013801	537.775494411427	37.207	0.41168	37.207	37.087	37.498	0					21	12	2	0	0	0	0.42746	1	14604	14604		49.536	1.8787	1	474800			2587	3400	1610	1620	2607	2607					0.0014764336706321046
AQGRGKREKLP	11	Unmodified	_AQGRGKREKLP_					0	0	0			REV__ENST00000229239.9_1_12:6643106-6643487:+|nuORF	REV__ENST00000229239.9_1_12:6643106-6643487:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	620.3703002929688	2	620.367653	1238.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.734	1	26.734	26.234	27.234	0								0	0	0	0.45674	1	8162	8162		21.686	13.451	1		+		2588	17908	1611	1621	2608	2608					0.11094090677170243
AQGVRSPL	8	Unmodified	_AQGVRSPL_					0	0	0		nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2397155761719	2	414.240327	826.466101	-0.16225	-6.7209E-05	-0.25096	-0.00010396	-0.4132	-0.00017117	414.24017008225945	24.523	0.31908	24.523	24.334	24.653	0					16	9	2	0	0	0	0.78142	1	7219	7219		23.042	3.6825	1	89569			2589	4054	1612	1622	2609	2609					0.045926489288035555
AQHGPVARR	9	Unmodified	_AQHGPVARR_					0	0	0			REV__ENSG00000075073|ENST00000373306|TACR2	REV__ENSG00000075073|ENST00000373306|TACR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.281982421875	2	496.280849	990.547145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.999	1	35.999	35.499	36.499	0								0	0	0	0.28164	1	12859	12859		38.806	3.1879	1		+		2590	13223	1613	1623	2610	2610					0.05149349691544103
AQHHAHLRLT	10	Unmodified	_AQHHAHLRLT_					0	0	0			REV__ENST00000572599.5_2_16:21170028-21172422:+|nuORF	REV__ENST00000572599.5_2_16:21170028-21172422:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.2205810546875	3	395.219617	1182.63702	3.4788	0.0013749	-1.1434	-0.0004519	2.3354	0.000923	395.55333791130954	26.219	0.14471	26.219	26.154	26.299	0					10	4	3	0	0	0	0.63019	1	8213	8213		30.569	7.9892	1	168940	+		2591	20391	1614	1624	2611	2611					0.05300979300113795
AQHSIFADK	9	Unmodified	_AQHSIFADK_					0	0	0		ENST00000468531.1_1_1:32385166-32408168:-|nuORF;ENST00000526960.1_1_1:32385166-32410235:-|nuORF;ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000468531.1_1_1:32385166-32408168:-|nuORF	ENST00000468531.1_1_1:32385166-32408168:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.76123046875	2	508.761623	1015.50869	1.0431	0.0005307	-1.0191	-0.00051846	0.024055	1.2238E-05	508.7611010083518	22.274	0.23392	22.274	22.18	22.414	0					15	5	4	0	0	0	0.26699	1	7199	7199		53.597	4.1553	1	547330			2592	9813	1615	1625	2612	2612					0.0015599926638287798
AQHSIFADK	9	Unmodified	_AQHSIFADK_					0	0	0		ENST00000468531.1_1_1:32385166-32408168:-|nuORF;ENST00000526960.1_1_1:32385166-32410235:-|nuORF;ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000468531.1_1_1:32385166-32408168:-|nuORF	ENST00000468531.1_1_1:32385166-32408168:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7615661621094	2	508.761623	1015.50869	0.20093	0.00010223	-0.14272	-7.2609E-05	0.058217	2.9618E-05	508.76161885758484	22.181	0.41137	22.181	21.972	22.384	0					22	8	4	0	0	0	0.037098	1	7455	7455		102.06	36.258	1	1192700			2593	9813	1615	1625	2613	2613					0.0015599926638287798
AQHSIFADK	9	Unmodified	_AQHSIFADK_					0	0	0		ENST00000468531.1_1_1:32385166-32408168:-|nuORF;ENST00000526960.1_1_1:32385166-32410235:-|nuORF;ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000468531.1_1_1:32385166-32408168:-|nuORF	ENST00000468531.1_1_1:32385166-32408168:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.76165771484375	2	508.761623	1015.50869	-0.070203	-3.5717E-05	0.85629	0.00043565	0.78609	0.00039993	508.76219599603496	22.133	0.41659	22.133	21.936	22.353	0					20	8	5	0	0	0	0.037098	1	7333	7333		102.06	28.087	1	866560			2594	9813	1615	1625	2614	2614					0.0015599926638287798
AQIENSAAVEK	11	Unmodified	_AQIENSAAVEK_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.3014526367188	2	580.30131	1158.58807	-0.10782	-6.2569E-05	0.13421	7.788E-05	0.026384	1.5311E-05	580.301533302567	21.006	0.11322	21.006	20.927	21.04	0					8	3	3	0	0	0	0.00076217	1	5955	5955		136.81	62.642	1	291770			2595	5483	1616	1626	2615	2615					0.015116014298428126
AQIENSAAVEK	11	Unmodified	_AQIENSAAVEK_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.3015747070312	2	580.30131	1158.58807	1.5454	0.0008968	-1.1244	-0.00065249	0.421	0.00024431	580.3005731633485	21.174	0.30961	21.174	20.964	21.273	0					11	6	3	0	0	0	1.0373E-08	1	6990	6990		204.56	89.665	1	943550			2596	5483	1616	1626	2616	2616					0.015116014298428126
AQIENSAAVEK	11	Unmodified	_AQIENSAAVEK_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.302001953125	2	580.30131	1158.58807	0.57513	0.00033375	0.39677	0.00023025	0.9719	0.00056399	580.301365371351	21.07	0.14062	21.07	20.979	21.12	0					7	3	3	0	0	0	0.24586	1	6056	6056		68.786	17.258	1	165500			2597	5483	1616	1626	2617	2617					0.015116014298428126
AQIENSAAVEK	11	Unmodified	_AQIENSAAVEK_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.3013916015625	2	580.30131	1158.58807	-1.6875	-0.00097923	1.7223	0.00099944	0.034825	2.0209E-05	580.3023496745072	21.059	0.1417	21.059	20.966	21.108	0					8	3	3	0	0	0	4.4639E-05	1	6045	6045		163.84	64.826	1	351280			2598	5483	1616	1626	2618	2618					0.015116014298428126
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;GBP1|p.K391Sfs*28|1|0.19|ENSG00000117228|chr1:89056212-89056212|T/-|frameshift_variant;GBP3|p.G430Afs*34|1|0.37|ENSG00000117226|chr1:89010977-89010977|C/-|frameshift_variant;ENSG00000117228|ENST00000370473|GBP1;ENSG00000117226|ENST00000370481|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.8095092773438	2	579.809302	1157.60405	0.72011	0.00041753	-0.22925	-0.00013292	0.49086	0.00028461	579.8091575963621	19.898	0.17546	19.898	19.822	19.997	0					14	5	3	0	0	0	3.5638E-09	1	5222	5222		206.73	123.98	1	1918300			2599	11494	1617	1627	2619	2619					0.03155307666747831
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;GBP1|p.K391Sfs*28|1|0.19|ENSG00000117228|chr1:89056212-89056212|T/-|frameshift_variant;GBP3|p.G430Afs*34|1|0.37|ENSG00000117226|chr1:89010977-89010977|C/-|frameshift_variant;ENSG00000117228|ENST00000370473|GBP1;ENSG00000117226|ENST00000370481|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.8094482421875	2	579.809302	1157.60405	-0.041215	-2.3897E-05	0.94544	0.00054818	0.90423	0.00052428	579.8098608752794	20.233	0.3366	20.233	20.142	20.478	0					19	7	4	0	0	0	3.5874E-18	1	6231	6231		233.09	131.49	1	9292100			2600	11494	1617	1627	2620	2620					0.03155307666747831
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;GBP1|p.K391Sfs*28|1|0.19|ENSG00000117228|chr1:89056212-89056212|T/-|frameshift_variant;GBP3|p.G430Afs*34|1|0.37|ENSG00000117226|chr1:89010977-89010977|C/-|frameshift_variant;ENSG00000117228|ENST00000370473|GBP1;ENSG00000117226|ENST00000370481|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.8096313476562	2	579.809302	1157.60405	-0.091785	-5.3218E-05	0.8868	0.00051418	0.79502	0.00046096	579.8099403425962	19.914	0.19513	19.914	19.842	20.037	0					17	6	4	0	0	0	3.5638E-09	1	5482	5482		206.73	105.13	1	838720			2601	11494	1617	1627	2621	2621					0.03155307666747831
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;GBP1|p.K391Sfs*28|1|0.19|ENSG00000117228|chr1:89056212-89056212|T/-|frameshift_variant;GBP3|p.G430Afs*34|1|0.37|ENSG00000117226|chr1:89010977-89010977|C/-|frameshift_variant;ENSG00000117228|ENST00000370473|GBP1;ENSG00000117226|ENST00000370481|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.8103637695312	2	579.809302	1157.60405	-0.081141	-4.7046E-05	1.865	0.0010813	1.7838	0.0010343	579.8103696587052	19.939	0.1163	19.939	19.86	19.976	0					5	3	2	0	0	0	0.00035695	1	5480	5480		141.91	63.647	1	130660			2602	11494	1617	1627	2622	2622					0.03155307666747831
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;GBP1|p.K391Sfs*28|1|0.19|ENSG00000117228|chr1:89056212-89056212|T/-|frameshift_variant;GBP3|p.G430Afs*34|1|0.37|ENSG00000117226|chr1:89010977-89010977|C/-|frameshift_variant;ENSG00000117228|ENST00000370473|GBP1;ENSG00000117226|ENST00000370481|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.8094482421875	2	579.809302	1157.60405	-0.38604	-0.00022383	0.63039	0.00036551	0.24435	0.00014168	579.8097697068898	20.104	0.11586	20.104	20.045	20.161	0					6	2	3	0	0	0	1.0526E-05	1	6475	6475		176.6	86.229	1	749640			2603	11494	1617	1627	2623	2623					0.03155307666747831
AQIIIPNPAA	10	Unmodified	_AQIIIPNPAA_					0	0	0		GLIS2|p.G397Afs*127|2|0.49|ENSG00000126603|chr16:4337132-4337132|G/-|frameshift_variant;ENSG00000126603|ENST00000433375|GLIS2	GLIS2|p.G397Afs*127|2|0.49|ENSG00000126603|chr16:4337132-4337132|G/-|frameshift_variant	GLIS2|p.G397Afs*127|2|0.49|ENSG00000126603|chr16:4337132-4337132|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53424072265625	3	336.53432	1006.58113	0.24136	8.1226E-05	-0.58101	-0.00019553	-0.33965	-0.0001143	336.5340790245858	21.773	0.7138	21.773	21.5	22.214	0					41	22	2	0	0	0	0.73697	1	6068	6068		20.837	10.733	1	217740			2604	3483	1618	1628	2624	2624					0.0781033333993264
AQIILKACEN	10	Unmodified	_AQIILKACEN_					0	0	0			REV__ENSG00000129187|ENST00000438320|DCTD	REV__ENSG00000129187|ENST00000438320|DCTD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.8031005859375	2	551.799891	1101.58523	1.8266	0.0010079	3.4424	0.0018995	5.269	0.0029075	551.8021931620466	36.69	0.12864	36.69	36.595	36.724	0					5	3	2	0	0	0	0.68774	1	13865	13865		23.523	0.48021	1	40263	+		2605	14541	1619	1629	2625	2625					0.03850054771351097
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.333740234375	2	540.332216	1078.64988	2.6495	0.0014316	-1.8233	-0.00098519	0.82622	0.00044643	540.831902789053	20.78	0.13818	20.78	20.707	20.845	0					8	5	2	0	0	0	0.034688	1	5616	5616		98.582	10.886	1	51629			2606	897	1620	1630	2626	2626					0.11369997639667417
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.3330688476562	2	540.332216	1078.64988	1.8706	0.0010107	-0.078142	-4.2222E-05	1.7924	0.00096851	540.3323462938517	21.072	0.1829	21.072	20.98	21.163	0					9	4	3	0	0	0	0.0034376	1	6650	6650		150.36	15.551	1	422010			2607	897	1620	1630	2627	2627					0.11369997639667417
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.5572204589844	3	360.557236	1078.64988	0.7283	0.00026259	-0.41834	-0.00015084	0.30996	0.00011176	360.55715042680447	21.316	0.69933	21.316	21.01	21.71	0					25	16	2	0	0	0	0.41958	1	6663	6663		40.058	9.4893	1	2338400			2608	897	1620	1630	2628	2628					0.11369997639667417
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.3338623046875	2	540.332216	1078.64988	4.9009	0.0026481	-2.6555	-0.0014349	2.2453	0.0012132	540.3309702233504	20.83	0.093023	20.83	20.761	20.854	0					8	3	3	0	0	0	0.01942	1	5877	5877		117.81	40.493	1	82527			2609	897	1620	1630	2629	2629					0.11369997639667417
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.5570373535156	3	360.557236	1078.64988	0.29373	0.00010591	-0.66141	-0.00023847	-0.36768	-0.00013257	360.5569780595944	20.987	0.2621	20.987	20.93	21.192	0					11	5	3	0	0	0	0.010427	1	6898	6898		140.11	54.951	1	955300			2610	897	1620	1630	2630	2630					0.11369997639667417
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.3323364257812	2	540.332216	1078.64988	1.4239	0.00076936	-0.87211	-0.00047123	0.55176	0.00029813	540.3317129566693	20.989	0.21433	20.989	20.93	21.144	0					11	4	4	0	0	0	0.0093724	1	6899	6899		126.24	16.123	1	783620			2611	897	1620	1630	2631	2631					0.11369997639667417
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.5570983886719	3	360.557236	1078.64988	0.40066	0.00014446	-0.78625	-0.00028349	-0.38559	-0.00013903	360.55687310582306	20.901	0.17426	20.901	20.792	20.966	0					6	4	2	0	0	0	0.21419	1	5973	5973		59.931	24.779	1	100590			2612	897	1620	1630	2632	2632					0.11369997639667417
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant;ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	EIF2B5|p.L605Pfs*9|1|0.26|ENSG00000145191|chr3:184143504-184143505|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.55712890625	3	360.557236	1078.64988	-0.067387	-2.4297E-05	-0.091799	-3.3099E-05	-0.15919	-5.7396E-05	360.5571436906168	21	0.46317	21	20.891	21.355	0					18	9	4	0	0	0	0.067603	1	6775	6775		89.029	23.563	1	3976400			2613	897	1620	1630	2633	2633					0.11369997639667417
AQILCAAQ	8	Unmodified	_AQILCAAQ_					0	0	0			REV__ENST00000401788.2_1_6:27978946-27979378:+|nuORF	REV__ENST00000401788.2_1_6:27978946-27979378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.21533203125	2	409.215463	816.416374	-0.51299	-0.00020992	0.1149	4.7021E-05	-0.39809	-0.0001629	409.21562238969017	22.097	1.2132	22.097	21.84	23.053	0					55	24	4	0	0	0	0.7126	1	7433	7433		31.955	2.1133	1	6800400	+		2614	16498	1621	1631	2634	2634					0.0008219792849786245
AQINSVFNK	9	Unmodified	_AQINSVFNK_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.777099609375	2	510.777274	1019.53999	-0.12132	-6.1965E-05	0.073785	3.7688E-05	-0.047531	-2.4278E-05	510.77719693349064	30.106	0.17247	30.106	29.993	30.166	0					14	6	3	0	0	0	0.10506	1	9546	9546		78.264	9.477	1	145440			2615	3047	1622	1632	2635	2635					0.031005723004795982
AQINSVFNK	9	Unmodified	_AQINSVFNK_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.77716064453125	2	510.777274	1019.53999	-0.0069589	-3.5544E-06	-0.31448	-0.00016063	-0.32144	-0.00016418	510.7770952035214	30.362	0.33774	30.362	30.272	30.61	0					12	8	2	0	0	0	0.14578	1	10929	10929		68.846	13.342	1	1025700			2616	3047	1622	1632	2636	2636					0.031005723004795982
AQINSVFNK	9	Unmodified	_AQINSVFNK_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.77777099609375	2	510.777274	1019.53999	-0.41498	-0.00021196	0.18354	9.3747E-05	-0.23145	-0.00011822	510.7772410860333	30.12	0.20778	30.12	30.014	30.222	0					14	8	2	0	0	0	0.026538	1	9861	9861		112.41	46.608	1	204390			2617	3047	1622	1632	2637	2637					0.031005723004795982
AQINSVFNK	9	Unmodified	_AQINSVFNK_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7774963378906	2	510.777274	1019.53999	1.2084	0.00061724	-0.84445	-0.00043133	0.36398	0.00018591	510.77685063625523	30.358	0.19472	30.358	30.221	30.416	0					10	4	3	0	0	0	0.36135	1	11349	11349		45.022	10.85	1	1171400			2618	3047	1622	1632	2638	2638					0.031005723004795982
AQINSVFNK	9	Unmodified	_AQINSVFNK_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7770690917969	2	510.777274	1019.53999	-0.4267	-0.00021795	0.76886	0.00039271	0.34216	0.00017477	510.7774992473933	30.354	0.15466	30.354	30.294	30.448	0					5	3	2	0	0	0	0.18416	1	11345	11345		63.534	10.597	1	84193			2619	3047	1622	1632	2639	2639					0.031005723004795982
AQINSVFNK	9	Unmodified	_AQINSVFNK_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.7773132324219	2	510.777274	1019.53999	-1.7806	-0.0009095	1.5509	0.00079216	-0.22973	-0.00011734	510.777965339215	30.14	0.17106	30.14	30.047	30.218	0					9	4	3	0	0	0	0.095583	1	10218	10218		80.455	27.518	1	187460			2620	3047	1622	1632	2640	2640					0.031005723004795982
AQITATIAK	9	Unmodified	_AQITATIAK_					0	0	0		MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant;nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7760925292969	2	458.776742	915.538931	0.68641	0.00031491	-1.2483	-0.00057267	-0.56184	-0.00025776	458.7762790709049	24.816	0.17988	24.816	24.729	24.909	0					10	5	3	0	0	0	0.070005	1	7374	7374		88.177	8.7259	1	253250			2621	1053	1623	1633	2641	2641					0.07778357931567825
AQITATIAK	9	Unmodified	_AQITATIAK_					0	0	0		MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant;nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7763977050781	2	458.776742	915.538931	-0.15755	-7.2282E-05	-0.69476	-0.00031874	-0.85231	-0.00039102	458.77638399091535	25.065	0.26556	25.065	25.008	25.273	0					13	5	4	0	0	0	5.2046E-05	1	8859	8859		195.57	45.211	1	1764600			2622	1053	1623	1633	2642	2642					0.07778357931567825
AQITATIAK	9	Unmodified	_AQITATIAK_					0	0	0		MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant;nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7764587402344	2	458.776742	915.538931	-0.44244	-0.00020298	-0.1065	-4.8861E-05	-0.54894	-0.00025184	458.7767822780323	25.068	0.26487	25.068	24.914	25.179	0					12	5	3	0	0	0	0.0037134	1	8719	8719		164.46	26.393	1	837730			2623	1053	1623	1633	2643	2643					0.07778357931567825
AQIWAFYE	8	Unmodified	_AQIWAFYE_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2476196289062	2	514.247818	1026.48108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.181	1	19.181	18.681	19.681	0								0	0	0	1.7419	1	4914	4914		33.516	0.70317	1				2624	7189	1624	1634	2644	2644					-0.031099039938681017
AQKGQKAPAQK	11	Unmodified	_AQKGQKAPAQK_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.836669921875	2	577.835654	1153.65676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.63	1	10.63	10.13	11.13	0								0	0	0	0.23171	1	2054	2054		60.118	17.254	1				2625	7279	1625	1635	2645	2645					0.08607310520210376
AQKQGRKVI	9	Unmodified	_AQKQGRKVI_					0	0	0		nc|ENSG00000079263|Q13342-2|SP140	nc|ENSG00000079263|Q13342-2|SP140	nc|ENSG00000079263|Q13342-2|SP140	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.2156066894531	3	343.217214	1026.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.099	1	30.099	29.599	30.599	0								0	0	0	0.3428	1	10209	10209		26.693	3.1702	1				2626	11442	1626	1636	2646	2646					0.11756246699701478
AQKTKHLE	8	Unmodified	_AQKTKHLE_					0	0	0		ENST00000460781.1_1_2:118709253-118753033:-|nuORF;ENSG00000125633|ENST00000376300|CCDC93	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7716979980469	2	477.771991	953.529429	0.41035	0.00019605	-1.4763	-0.00070532	-1.0659	-0.00050927	477.77121774844596	27.132	0.41877	27.132	26.847	27.265	0					26	10	3	0	0	0	0.67394	1	9416	9416		37.159	5.2042	1	477280			2627	3423	1627	1637	2647	2647					0.0508058964603606
AQLGACTRPV	10	Unmodified	_AQLGACTRPV_					0	0	0		nc|ENSG00000105327|Q96PG8-1|BBC3;nc|ENSG00000105327|Q96PG8|BBC3	nc|ENSG00000105327|Q96PG8-1|BBC3	nc|ENSG00000105327|Q96PG8-1|BBC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2748718261719	2	508.271301	1014.52805	2.9682	0.0015086	2.9647	0.0015069	5.9329	0.0030155	508.27283941750096	34.209	0.40562	34.209	34.069	34.474	0					20	8	3	0	0	0	0.39827	1	13082	13082		56.434	10.482	1	1977700			2628	11469	1628	1638	2648	2648					0.02136632285646556
AQLGWKSFL	9	Unmodified	_AQLGWKSFL_					0	0	0		ENST00000518062.1_1_5:158588183-158590023:-|nuORF;RNF145|p.T570Sfs*23|1|0.07|ENSG00000145860|chr5:159158953-159158954|-/AGCATAC|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;RNF145|p.R512C|1|0.37|ENSG00000145860|chr5:159161358-159161358|G/A|missense_variant	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.29052734375	2	525.292559	1048.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.518	1	25.518	25.018	26.018	0								0	0	0	0.29356	1	7683	7683		15.642	0	1				2629	4696	1629	1639	2649	2649					0.04822350685526544
AQLIILEHA	9	Unmodified	_AQLIILEHA_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.711	1	33.711	33.211	34.211	0								0	0	0	0.32356	1	12490	12490		30.318	6.115	1				2630	1401	1630	1640	2650	2650					0.0781033333993264
AQLPVIENK	9	Unmodified	_AQLPVIENK_					0	0	0		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.29443359375	2	506.295299	1010.57605	-0.08014	-4.0574E-05	-0.39947	-0.00020225	-0.47961	-0.00024282	506.2950616380293	30.345	0.34146	30.345	30.159	30.501	0					22	12	2	0	0	0	0.38666	1	9631	9631		42.864	10.052	1	58873			2631	3254	1631	1641	2651	2651					0.07118029477328491
AQLPVIENK	9	Unmodified	_AQLPVIENK_					0	0	0		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2949523925781	2	506.295299	1010.57605	-0.041073	-2.0795E-05	-0.19738	-9.9933E-05	-0.23845	-0.00012073	506.29513469053353	30.605	0.64016	30.605	30.195	30.835	0					38	15	3	0	0	0	0.42902	1	11039	11039		39.253	7.723	1	340560			2632	3254	1631	1641	2652	2652					0.07118029477328491
AQLQRLEL	8	Unmodified	_AQLQRLEL_					0	0	0			REV__TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	REV__TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.78717041015625	2	485.787641	969.56073	-0.089284	-4.3373E-05	-0.31594	-0.00015348	-0.40523	-0.00019685	485.7873252746937	36.6	0.18575	36.6	36.509	36.695	0					8	5	2	0	0	0	0.43813	1	14263	14263		66.429	2.222	1	146250	+		2633	15436	1632	1642	2653	2653					0.07473162680128098
AQLRSPVAT	9	Unmodified	_AQLRSPVAT_					0	0	0			REV__nc|ENSG00000276717|A8MTI9|PRSS47P	REV__nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.77178955078125	2	471.771991	941.529429	-0.017961	-8.4736E-06	-0.52149	-0.00024602	-0.53945	-0.0002545	471.7716300519808	21.095	0.22564	21.095	20.92	21.145	0					13	6	3	0	0	0	0.4966	1	5770	5770		32.812	1.2826	1	115980	+		2634	21252	1633	1643	2654	2654					0.05632589646052111
AQLSVPHQ	8	Unmodified	_AQLSVPHQ_					0	0	0			REV__nc|ENSG00000172819|P13631-4|RARG	REV__nc|ENSG00000172819|P13631-4|RARG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.23809814453125	2	440.237784	878.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.541	1	16.541	16.041	17.041	0								0	0	0	1.7419	1	3991	3991		51.335	0	1		+		2635	21121	1634	1644	2655	2655					0.01692345066192047
AQMEGFLNR	9	Unmodified	_AQMEGFLNR_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2603759765625	2	533.260933	1064.50731	0.43099	0.00022983	0.15491	8.2606E-05	0.5859	0.00031244	533.2609295470277	34.517	0.15131	34.517	34.435	34.586	0					9	6	2	0	0	0	0.032052	1	11278	11278		107.01	38.221	1	95688			2636	2899	1635	1645	2656	2656					-0.022359580940246815
AQMEGFLNR	9	Unmodified	_AQMEGFLNR_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2616577148438	2	533.260933	1064.50731	0.13908	7.4167E-05	0.55916	0.00029818	0.69825	0.00037235	533.2615087803656	34.769	0.19862	34.769	34.68	34.878	0					15	5	3	0	0	0	0.076532	1	12987	12987		85.862	30.358	1	393630			2637	2899	1635	1645	2657	2657					-0.022359580940246815
AQMRAAINQK	10	Unmodified	_AQMRAAINQK_					0	0	0		ENST00000522632.1_1_8:110346694-110348434:+|nuORF;ENST00000517756.5_1_8:110346694-110355643:+|nuORF;ENST00000519754.5_1_8:110348365-110351660:+|nuORF;ENST00000518584.5_1_8:110346694-110352812:+|nuORF;nc|ENSG00000120533|Q9NPA8-2|ENY2;ENSG00000120533|ENST00000521688|ENY2	ENST00000522632.1_1_8:110346694-110348434:+|nuORF	ENST00000522632.1_1_8:110346694-110348434:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.8086547851562	2	565.808582	1129.60261	0.28813	0.00016302	-1.3635	-0.00077146	-1.0753	-0.00060843	565.8078555703237	18.158	0.28329	18.158	17.926	18.209	0					12	6	3	0	0	0	0.072943	1	5273	5273		101.6	16.44	1	1084500			2638	3176	1636	1646	2658	2658					0.042993950970185324
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.29498291015625	2	500.792924	999.571294	0.40219	0.00020142	0.3835	0.00019205	0.78569	0.00039347	500.7934464248496	15.097	0.073811	15.097	15.052	15.126	0					8	3	3	0	0	0	0.082776	1	3214	3214		83.647	5.3832	1	130900			2639	1090	1637	1647	2659	2659					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7935791015625	2	500.792924	999.571294	-0.046604	-2.3339E-05	0.017545	8.7864E-06	-0.029059	-1.4552E-05	500.7932561166967	15.113	0.05043	15.113	15.065	15.115	0					4	2	2	0	0	0	0.18416	1	3218	3218		63.534	15.877	1	87853			2640	1090	1637	1647	2660	2660					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.19769287109375	3	334.197708	999.571294	0.65326	0.00021832	-0.8223	-0.00027481	-0.16905	-5.6495E-05	334.1974593902018	15.414	0.17522	15.414	15.328	15.503	0					10	4	3	0	0	0	0.16806	1	3968	3968		91.265	20.449	1	2061100			2641	1090	1637	1647	2661	2661					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.79290771484375	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.396	1	15.396	14.896	15.896	0								0	0	0	0.013195	1	3966	3966		163.15	42.283	1				2642	1090	1637	1647	2662	2662					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.792724609375	2	500.792924	999.571294	-0.13069	-6.5447E-05	-1.2362	-0.00061907	-1.3669	-0.00068452	500.7930959488161	15.529	0.30126	15.529	15.314	15.615	0					22	7	4	0	0	0	0.015496	1	3977	3977		129.42	38.645	1	3424200			2643	1090	1637	1647	2663	2663					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.1977233886719	3	334.197708	999.571294	0.38542	0.00012881	-0.7994	-0.00026716	-0.41398	-0.00013835	334.1974159550821	15.393	0.16178	15.393	15.289	15.451	0					7	3	3	0	0	0	0.15163	1	4188	4188		83.647	30.558	1	586200			2644	1090	1637	1647	2664	2664					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.79296875	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.36	1	15.36	14.86	15.86	0								0	0	0	0.006929	1	4184	4184		155.58	31.505	1				2645	1090	1637	1647	2665	2665					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.79278564453125	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.172	1	15.172	14.672	15.672	0								0	0	0	0.01209	1	3347	3347		168.26	35.501	1				2646	1090	1637	1647	2666	2666					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7925720214844	2	500.792924	999.571294	-2.1176	-0.0010605	-0.56819	-0.00028455	-2.6858	-0.001345	501.29349074228736	15.261	0.21632	15.261	15.124	15.341	0					21	7	3	0	0	0	0.0067848	1	3344	3344		150.36	28.186	1	1121000			2647	1090	1637	1647	2667	2667					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.19757080078125	3	334.197708	999.571294	-0.010164	-3.3966E-06	-0.23441	-7.8338E-05	-0.24457	-8.1734E-05	334.19758499704443	15.322	0.16615	15.322	15.263	15.429	0					7	3	3	0	0	0	0.085655	1	4022	4022		99.013	31.519	1	1312900			2648	1090	1637	1647	2668	2668					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7928771972656	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.324	1	15.324	14.824	15.824	0								0	0	0	0.013195	1	4014	4014		163.15	44.408	1				2649	1090	1637	1647	2669	2669					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.79290771484375	2	500.792924	999.571294	2.9223	0.0014635	-4.3917	-0.0021993	-1.4694	-0.00073586	500.7914086286535	15.341	0.34987	15.341	15.229	15.579	0					24	7	4	0	0	0	0.020674	1	4030	4030		120.87	25.053	1	7065000			2650	1090	1637	1647	2670	2670					0.07149145334562945
AQNDLSVK	8	Unmodified	_AQNDLSVK_					0	0	0			REV__CLEC16A|p.Y604Ifs*18|1|0.23|ENSG00000038532|chr16:11044063-11044063|T/-|frameshift_variant	REV__CLEC16A|p.Y604Ifs*18|1|0.23|ENSG00000038532|chr16:11044063-11044063|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.73480224609375	2	437.735074	873.455596	0.70216	0.00030736	-1.4073	-0.00061603	-0.70516	-0.00030867	437.73453266395495	18.927	0.21573	18.927	18.818	19.034	0					12	4	4	0	0	0	0.44767	1	5909	5909		65.465	3.7741	1	687220	+		2651	12510	1638	1648	2671	2671					0.013806214837245534
AQNEPLTQK	9	Unmodified	_AQNEPLTQK_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.772705078125	2	514.772188	1027.52982	0.12889	6.6351E-05	0.69842	0.00035953	0.82731	0.00042588	514.7727319439856	17.993	0.2264	17.993	17.907	18.133	0					11	6	3	0	0	0	0.082776	1	4394	4394		83.647	37.675	1	235090			2652	5167	1639	1649	2672	2672					0.01715964575214457
AQNEPLTQK	9	Unmodified	_AQNEPLTQK_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7724609375	2	514.772188	1027.52982	0.025098	1.292E-05	1.2097	0.00062272	1.2348	0.00063564	514.7731395565528	18.287	0.2327	18.287	18.198	18.431	0					15	5	4	0	0	0	0.040209	1	5331	5331		99.013	16.262	1	1817900			2653	5167	1639	1649	2673	2673					0.01715964575214457
AQNEPLTQK	9	Unmodified	_AQNEPLTQK_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.7723388671875	2	514.772188	1027.52982	0.037903	1.9512E-05	1.0977	0.00056507	1.1356	0.00058458	514.7726995371993	18.006	0.16955	18.006	17.895	18.064	0					10	4	3	0	0	0	0.076532	1	4624	4624		85.862	32.51	1	202180			2654	5167	1639	1649	2674	2674					0.01715964575214457
AQNEPLTQK	9	Unmodified	_AQNEPLTQK_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7725830078125	2	514.772188	1027.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.252	1	18.252	17.752	18.752	0								0	0	0	0.0011674	1	5570	5570		126.24	52.268	1				2655	5167	1639	1649	2675	2675					0.01715964575214457
AQNEPLTQK	9	Unmodified	_AQNEPLTQK_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7728881835938	2	514.772188	1027.52982	-1.588	-0.00081747	2.9763	0.0015321	1.3883	0.00071466	514.7739630490197	18.042	0.20883	18.042	17.941	18.15	0					8	4	2	0	0	0	0.15558	1	4663	4663		66.962	19.002	1	354010			2656	5167	1639	1649	2676	2676					0.01715964575214457
AQNEPLTQK	9	Unmodified	_AQNEPLTQK_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7725219726562	2	514.772188	1027.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.27	1	18.27	17.77	18.77	0								0	0	0	0.0026034	1	5437	5437		150.36	65.446	1				2657	5167	1639	1649	2677	2677					0.01715964575214457
AQNPSLFVK	9	Unmodified	_AQNPSLFVK_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2821044921875	2	502.282192	1002.54983	0.50752	0.00025492	-0.45904	-0.00023057	0.048483	2.4352E-05	502.2818740987824	30.73	0.3614	30.73	30.592	30.954	0					31	15	3	0	0	0	0.22837	1	9813	9813		58.23	17.452	1	428890			2658	3038	1640	1650	2678	2678					0.04865760305847289
AQNPSLFVK	9	Unmodified	_AQNPSLFVK_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2820129394531	2	502.282192	1002.54983	-0.044797	-2.2501E-05	-0.22921	-0.00011513	-0.274	-0.00013763	502.2821098385151	30.742	0.38005	30.742	30.586	30.966	0					35	16	3	0	0	0	0.35021	1	9788	9788		45.972	5.1941	1	940740			2659	3038	1640	1650	2679	2679					0.04865760305847289
AQNPSLFVK	9	Unmodified	_AQNPSLFVK_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2819519042969	2	502.282192	1002.54983	0.7109	0.00035707	-0.82428	-0.00041402	-0.11338	-5.6947E-05	502.2817977853406	31.009	0.721	31.009	30.703	31.424	0					38	17	4	0	0	0	0.0067848	1	11252	11252		150.36	65.201	1	2932900			2660	3038	1640	1650	2680	2680					0.04865760305847289
AQNPSLFVK	9	Unmodified	_AQNPSLFVK_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.28204345703125	2	502.282192	1002.54983	-0.073181	-3.6757E-05	-0.072493	-3.6412E-05	-0.14567	-7.317E-05	502.28214429967403	31.041	0.50745	31.041	30.865	31.372	0					22	12	2	0	0	0	0.063171	1	11220	11220		90.601	31.819	1	3871600			2661	3038	1640	1650	2681	2681					0.04865760305847289
AQNPSLFVK	9	Unmodified	_AQNPSLFVK_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.28204345703125	2	502.282192	1002.54983	0.1378	6.9213E-05	-0.40761	-0.00020474	-0.26982	-0.00013552	502.2820147881404	30.798	0.49817	30.798	30.583	31.081	0					34	13	4	0	0	0	0.026538	1	10508	10508		112.41	45.982	1	1891600			2662	3038	1640	1650	2682	2682					0.04865760305847289
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8126220703125	2	543.811313	1085.60807	1.82	0.00098971	-0.55421	-0.00030139	1.2657	0.00068832	543.8109248510127	27.99	0.24748	27.99	27.882	28.129	0					20	9	4	0	0	0	0.026439	1	8674	8674		120.63	57.097	1	339840			2663	1488	1641	1651	2683	2683					0.06869397160471635
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8118286132812	2	543.811313	1085.60807	1.8772	0.0010208	-1.0646	-0.00057895	0.81259	0.00044189	543.8105727402984	28.254	0.4106	28.254	28.165	28.575	0					26	10	4	0	0	0	0.0079448	1	9955	9955		153.1	62.325	1	2108600			2664	1488	1641	1651	2684	2684					0.06869397160471635
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8119506835938	2	543.811313	1085.60807	0.39491	0.00021476	0.8776	0.00047725	1.2725	0.00069201	543.8117348025803	27.99	0.22361	27.99	27.903	28.126	0					19	8	3	0	0	0	0.046394	1	8971	8971		110.54	39.724	1	374010			2665	1488	1641	1651	2685	2685					0.06869397160471635
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.811767578125	2	543.811313	1085.60807	1.9934	0.001084	-0.9278	-0.00050455	1.0656	0.00057947	543.8106403557298	28.232	0.3063	28.232	28.126	28.432	0					18	6	4	0	0	0	0.0015876	1	10330	10330		176.6	83.455	1	2207800			2666	1488	1641	1651	2686	2686					0.06869397160471635
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8134765625	2	543.811313	1085.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.07	1	28.07	27.57	28.57	0								0	0	0	0.25756	1	9267	9267		57.149	17.091	1				2667	1488	1641	1651	2687	2687					0.06869397160471635
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8115844726562	2	543.811313	1085.60807	1.0883	0.00059182	0.30434	0.00016551	1.3926	0.00075733	543.811564299934	28.035	0.20702	28.035	27.952	28.159	0					13	5	3	0	0	0	0.026439	1	9245	9245		120.63	43.856	1	285620			2668	1488	1641	1651	2688	2688					0.06869397160471635
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8114013671875	2	543.811313	1085.60807	0.60133	0.00032701	-0.0081785	-4.4475E-06	0.59315	0.00032256	543.8111702406691	28.169	0.26629	28.169	28.109	28.375	0					8	5	2	0	0	0	0.075264	1	10183	10183		100.82	27.94	1	727120			2669	1488	1641	1651	2689	2689					0.06869397160471635
AQNSVIIVDK	10	Unmodified	_AQNSVIIVDK_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8117065429688	2	543.811313	1085.60807	1.9925	0.0010836	-1.1519	-0.0006264	0.84065	0.00045716	543.810610777677	28.203	0.31732	28.203	28.092	28.409	0					18	6	4	0	0	0	0.0015876	1	10179	10179		176.6	85.822	1	2766500			2670	1488	1641	1651	2690	2690					0.06869397160471635
AQNTVICSK	9	Unmodified	_AQNTVICSK_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM;ENST00000474691.1_1_2:47596644-47600714:+|nuORF	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2497863769531	2	482.250034	962.485516	0.047441	2.2878E-05	-0.76917	-0.00037093	-0.72173	-0.00034805	482.24960971507505	19.653	0.076746	19.653	19.605	19.682	0					4	2	2	0	0	0	0.12278	1	5132	5132		74.165	5.3782	1	36592			2671	3144	1642	1652	2691	2691					0.0027723715739966792
AQNTVICSK	9	Unmodified	_AQNTVICSK_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM;ENST00000474691.1_1_2:47596644-47600714:+|nuORF	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.24981689453125	2	482.250034	962.485516	-0.6147	-0.00029644	-0.22871	-0.0001103	-0.84342	-0.00040674	482.24993519676957	19.902	0.22008	19.902	19.791	20.011	0					9	4	3	0	0	0	0.19891	1	6246	6246		61.765	20.986	1	380870			2672	3144	1642	1652	2692	2692					0.0027723715739966792
AQNTVYSSL	9	Unmodified	_AQNTVYSSL_					0	0	0			REV__TOX4|p.A352T|1|0.31|ENSG00000092203|chr14:21492670-21492670|G/A|missense_variant	REV__TOX4|p.A352T|1|0.31|ENSG00000092203|chr14:21492670-21492670|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.7452697753906	2	491.745639	981.476725	-0.54123	-0.00026615	-0.15046	-7.3988E-05	-0.69169	-0.00034013	491.745555470448	29.243	0.24838	29.243	29.157	29.406	0					8	6	2	0	0	0	0.27249	1	10430	10430		52.937	10.541	1	267110	+		2673	21661	1643	1653	2693	2693					-0.014754132074131121
AQPAQTSYL	9	Unmodified	_AQPAQTSYL_					0	0	0		STAM2|p.Q453Kfs*10|1|0.07|ENSG00000115145|chr2:152120795-152120795|G/-|frameshift_variant;ENSG00000115145|ENST00000263904|STAM2	STAM2|p.Q453Kfs*10|1|0.07|ENSG00000115145|chr2:152120795-152120795|G/-|frameshift_variant	STAM2|p.Q453Kfs*10|1|0.07|ENSG00000115145|chr2:152120795-152120795|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.74951171875	2	489.748182	977.481811	2.6363	0.0012911	0.70262	0.00034411	3.3389	0.0016352	489.7482851182947	45.409	0.10306	45.409	45.341	45.444	0					7	4	2	0	0	0	0.47038	1	18184	18184		35.618	0	1	54503			2674	2884	1644	1654	2694	2694					-0.007831093448203319
AQPESLLRE	9	Unmodified	_AQPESLLRE_					0	0	0		ENST00000550853.1_2_9:136891668-136894151:+|nuORF;ENST00000603928.2_2_9:136893890-136894151:+|nuORF	ENST00000550853.1_2_9:136891668-136894151:+|nuORF	ENST00000550853.1_2_9:136891668-136894151:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.8045043945312	2	521.780013	1041.54547	1.7575	0.00091704	-1.2783	-0.00066699	0.47923	0.00025005	521.7794655764138	13.166	0.36599	13.166	12.884	13.25	0					14	8	2	0	0	0	0.30951	1	3023	3023		49.442	5.0644	1	48542			2675	10619	1645	1655	2695	2695					0.026362510922808724
AQPLHLQCP	9	Unmodified	_AQPLHLQCP_					0	0	0		nc|ENSG00000173421|Q8IYA8-2|IHO1;ENSG00000173421|ENST00000452691|IHO1	nc|ENSG00000173421|Q8IYA8-2|IHO1	nc|ENSG00000173421|Q8IYA8-2|IHO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.1761169433594	3	336.176138	1005.50659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.069	1	17.069	16.569	17.569	0								0	0	0	0.34845	1	5005	5005		25.574	2.5316	1				2676	6426	1646	1656	2696	2696					0.004052472569242127
AQPRLPKPA	9	Unmodified	_AQPRLPKPA_					0	0	0		nc|ENSG00000293328|Q8N9T2|NKAPP1	nc|ENSG00000293328|Q8N9T2|NKAPP1	nc|ENSG00000293328|Q8N9T2|NKAPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	326.5342102050781	3	326.534543	976.581799	-0.66775	-0.00021804	0.36019	0.00011762	-0.30756	-0.00010043	326.534687294386	20.56	0.26096	20.56	20.438	20.699	0					23	8	3	0	0	0	0.61124	1	5757	5757		18.262	4.125	1	262400			2677	11832	1647	1657	2697	2697					0.09257172779643952
AQPYGPGK	8	Unmodified	_AQPYGPGK_					0	0	0			REV__ENSG00000107295|ENST00000380607|SH3GL2	REV__ENSG00000107295|ENST00000380607|SH3GL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.2153625488281	2	409.213778	816.413003	3.4331	0.0014049	0.25778	0.00010549	3.6909	0.0015104	409.21396561550284	21.904	0.44077	21.904	21.715	22.156	0					33	13	4	0	0	0	0.54629	1	6309	6309		55.504	7.5886	1	588410	+		2678	13852	1648	1658	2698	2698					-0.0025472885386079724
AQQKFKINK	9	Unmodified	_AQQKFKINK_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.88909912109375	3	368.888986	1103.64513	0.46957	0.00017322	-0.22267	-8.2139E-05	0.2469	9.1079E-05	368.88888920523897	17.497	0.40055	17.497	17.415	17.816	0					20	10	4	0	0	0	0.098791	1	4951	4951		79.713	16.179	1	2134400			2679	9701	1649	1659	2699	2699					0.09745113496887825
AQQKFKINK	9	Unmodified	_AQQKFKINK_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.8301391601562	2	552.82984	1103.64513	0.21976	0.00012149	0.24886	0.00013758	0.46861	0.00025906	552.8301698075504	17.249	0.11657	17.249	17.168	17.284	0					8	3	3	0	0	0	0.24334	1	4296	4296		68.787	25.923	1	200700			2680	9701	1649	1659	2700	2700					0.09745113496887825
AQQKFKINK	9	Unmodified	_AQQKFKINK_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.8303833007812	2	552.82984	1103.64513	-1.2438	-0.00068759	2.4422	0.0013501	1.1984	0.00066251	552.8314550484592	17.266	0.12041	17.266	17.183	17.303	0					5	3	2	0	0	0	0.035062	1	4275	4275		99.375	42.654	1	144100			2681	9701	1649	1659	2701	2701					0.09745113496887825
AQQKFKINK	9	Unmodified	_AQQKFKINK_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8301391601562	2	552.82984	1103.64513	1.8186	0.0010054	-1.2224	-0.00067578	0.59616	0.00032958	552.8292574857468	17.416	0.45647	17.416	17.175	17.632	0					12	9	3	0	0	0	0.026538	1	5038	5038		108.09	33.832	1	959780			2682	9701	1649	1659	2702	2702					0.09745113496887825
AQQQAKAVLKH	11	Unmodified	_AQQQAKAVLKH_					0	0	0		ENSG00000187609|ENST00000340951|EXD3;nc|ENSG00000187609|Q8N9H8-3|EXD3;ENST00000491734.6_1_9:140201404-140249090:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.8594970703125	2	611.356754	1220.69895	-0.10562	-6.4572E-05	0.64771	0.00039598	0.54209	0.00033141	611.3570460138175	53.592	0.76965	53.592	53.26	54.03	0					100	49	3	0	0	0	0.67178	1	16275	16275		30.318	12.85	1	197750			2683	7205	1650	1660	2703	2703					0.09743285928584555
AQQRYLIHNHA	11	Unmodified	_AQQRYLIHNHA_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2394104003906	3	450.905698	1349.69527	-0.10502	-4.7356E-05	-1.2974	-0.000585	-1.4024	-0.00063236	451.2393799392465	15.772	0.16258	15.772	15.686	15.849	0					5	3	2	0	0	0	0.66915	1	4403	4403		30.569	2.9249	1	112380			2684	6121	1651	1661	2704	2704					0.034406161547622105
AQQVKTYH	8	Unmodified	_AQQVKTYH_					0	0	0			REV__ENST00000495039.1_1_7:92888888-92902105:+|nuORF	REV__ENST00000495039.1_1_7:92888888-92902105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7561340332031	2	487.756341	973.498129	-0.081279	-3.9644E-05	-0.81056	-0.00039536	-0.89184	-0.000435	487.75590621701537	22.526	0.36063	22.526	22.367	22.728	0					17	7	3	0	0	0	0.49216	1	7624	7624		60.972	11.53	1	380120	+		2685	12826	1652	1662	2705	2705					0.010320166119413443
AQRIMISRQ	9	Unmodified	_AQRIMISRQ_					0	0	0		tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.208251953125	3	368.209842	1101.6077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.117	1	11.117	10.617	11.617	0								0	0	0	0.33579	1	2205	2205		28.081	0	1				2686	22797	1653	1663	2706	2706					0.06095698959620677
AQRLRLGPF	9	Unmodified	_AQRLRLGPF_					0	0	0			REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.317138671875	2	529.3169	1056.61925	0.085304	4.5153E-05	1.4534	0.00076932	1.5387	0.00081447	529.3177176072304	27.727	0.23194	27.727	27.676	27.908	0					12	8	2	0	0	0	0.30268	1	8878	8878		50.025	0.58299	1	111660	+		2687	17906	1654	1664	2707	2707					0.09320264045254589
AQRSVVFLF	9	Unmodified	_AQRSVVFLF_					0	0	0		ENST00000560992.1_1_15:41851455-41853662:+|nuORF	ENST00000560992.1_1_15:41851455-41853662:+|nuORF	ENST00000560992.1_1_15:41851455-41853662:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.8047485351562	2	533.805834	1065.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.893	1	20.893	20.393	21.393	0								0	0	0	0.36266	1	5961	5961		21.96	3.6355	1				2688	10699	1655	1665	2708	2708					0.06694039576859723
AQSALQGGLR	10	Unmodified	_AQSALQGGLR_					0	0	0			REV__ENST00000285071.8_1_17:17116566-17116938:-|nuORF	REV__ENST00000285071.8_1_17:17116566-17116938:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.78009033203125	2	500.780348	999.546142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.877	1	20.877	20.377	21.377	0								0	0	0	0.21707	1	6548	6548		62.107	5.6736	1		+		2689	18143	1656	1666	2709	2709					0.04635090531996866
AQSIHWYL	8	Unmodified	_AQSIHWYL_					0	0	0			REV__CHRM2|p.R211Q|1|0.3|ENSG00000181072|chr7:137015497-137015497|G/A|missense_variant	REV__CHRM2|p.R211Q|1|0.3|ENSG00000181072|chr7:137015497-137015497|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.263427734375	2	509.261259	1016.50797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.03	1	22.03	21.53	22.53	0								0	0	0	1.7419	1	6493	6493		40.573	5.3719	1		+		2690	12492	1657	1667	2710	2710					0.0003720461731973046
AQSITTSHEW	10	Unmodified	_AQSITTSHEW_					0	0	0			REV__OR9Q2|p.G89S|1|0.36|ENSG00000186513|chr11:58190755-58190755|G/A|missense_variant	REV__OR9Q2|p.G89S|1|0.36|ENSG00000186513|chr11:58190755-58190755|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.2728881835938	2	580.272552	1158.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.136	1	33.136	32.636	33.636	0								0	0	0	0.4044	1	11101	11101		29.17	0.020503	1		+		2691	21326	1658	1668	2711	2711					-0.042372407757284236
AQSKIKSHL	9	Unmodified	_AQSKIKSHL_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	337.8697509765625	3	337.869703	1010.58728	-1.9211	-0.0006491	1.8697	0.00063172	-0.051415	-1.7372E-05	337.87034257002847	14.715	0.081757	14.715	14.674	14.756	0					4	2	2	0	0	0	0.38666	1	3179	3179		42.864	6.4175	1	76849	+		2692	12323	1659	1669	2712	2712					0.08240851571463281
AQSLHREATK	10	Unmodified	_AQSLHREATK_					0	0	0		ENSG00000035403|ENST00000211998|VCL;VCL|p.A969V|1|0.31|ENSG00000035403|chr10:74112069-74112069|C/T|missense_variant	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.8103637695312	2	570.809636	1139.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.173	1	12.173	11.673	12.673	0								0	0	0	0.34721	1	2675	2675		31.634	0	1				2693	1166	1660	1670	2713	2713					0.04050147106477198
AQSMPGQK	8	Unmodified	_AQSMPGQK_					0	0	0			REV__AKAP13|p.T1385S|1|0.38|ENSG00000170776|chr15:85585816-85585816|C/G|missense_variant	REV__AKAP13|p.T1385S|1|0.38|ENSG00000170776|chr15:85585816-85585816|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.7102355957031	2	423.710545	845.406537	-0.35718	-0.00015134	0.05297	2.2444E-05	-0.30421	-0.0001289	423.7106198194742	15.413	0.25862	15.413	15.212	15.471	0					13	5	3	0	0	0	0.59773	1	4024	4024		49.442	5.0644	1	144830	+		2694	12127	1661	1671	2714	2714					-0.0223499007687451
AQSQVQMKK	9	Unmodified	_AQSQVQMKK_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.226318359375	2	524.284408	1046.55426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.747	1	14.747	14.247	15.247	0								0	0	0	0.23445	1	3892	3892		45.972	8.1607	1				2695	3880	1662	1672	2715	2715					0.03284901457118394
AQSTFTLAI	9	Unmodified	_AQSTFTLAI_					0	0	0		C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2637023925781	2	476.260925	950.507297	-0.062455	-2.9745E-05	4.3891	0.0020903	4.3266	0.0020606	476.26346250795405	26.479	0.14355	26.479	26.396	26.539	0					5	3	2	0	0	0	0.37197	1	8545	8545		44.117	1.7207	1	65294			2696	336	1663	1673	2716	2716					0.030063651776117695
AQSYVLVKK	9	Unmodified	_AQSYVLVKK_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.3134765625	2	518.313492	1034.61243	0.05259	2.7258E-05	-1.2761	-0.00066143	-1.2235	-0.00063417	518.3126048953816	22.235	0.27876	22.235	22.106	22.384	0					10	6	3	0	0	0	0.037924	1	7204	7204		101.25	51.811	1	628060			2697	6034	1664	1674	2717	2717					0.09650906374031365
AQSYVLVKK	9	Unmodified	_AQSYVLVKK_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.8780212402344	3	345.878087	1034.61243	-0.035149	-1.2157E-05	-0.016716	-5.7817E-06	-0.051866	-1.7939E-05	345.8780818311663	22.147	0.26617	22.147	22.037	22.304	0					8	5	2	0	0	0	0.27249	1	7332	7332		68.846	36.034	1	888330			2698	6034	1664	1674	2718	2718					0.09650906374031365
AQTGTRWNK	9	Unmodified	_AQTGTRWNK_					0	0	0		ENSG00000198258|ENST00000586895|UBL5;ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2783203125	2	531.277972	1060.54139	1.7213	0.00091447	-0.90247	-0.00047946	0.8188	0.00043501	531.2774385402004	16.472	0.36693	16.472	16.313	16.68	0					14	7	3	0	0	0	0.037924	1	4723	4723		101.25	16.092	1	3788700			2699	7545	1665	1675	2719	2719					0.013542063892145961
AQTGTRWNK	9	Unmodified	_AQTGTRWNK_					0	0	0		ENSG00000198258|ENST00000586895|UBL5;ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2783203125	2	531.277972	1060.54139	-1.2364	-0.0006569	1.8502	0.00098299	0.61379	0.00032609	531.2788902031788	16.291	0.18499	16.291	16.218	16.403	0					9	5	3	0	0	0	0.012231	1	3836	3836		136.27	34.667	1	412050			2700	7545	1665	1675	2720	2720					0.013542063892145961
AQTGTRWNK	9	Unmodified	_AQTGTRWNK_					0	0	0		ENSG00000198258|ENST00000586895|UBL5;ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2781372070312	2	531.277972	1060.54139	1.6904	0.00089807	-1.3092	-0.00069554	0.38122	0.00020253	531.2773321520499	16.491	0.2666	16.491	16.384	16.65	0					11	5	3	0	0	0	0.04067	1	4584	4584		98.582	16.341	1	2661200			2701	7545	1665	1675	2721	2721					0.013542063892145961
AQTIEKTY	8	Unmodified	_AQTIEKTY_					0	0	0			REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2506103515625	2	477.250557	952.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.255	1	25.255	24.755	25.755	0								0	0	0	1.7419	1	7579	7579		68.787	0.30212	1		+		2702	21960	1666	1676	2722	2722					0.008417747979592605
AQTIEKTY	8	Unmodified	_AQTIEKTY_					0	0	0			REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2503662109375	2	477.250557	952.486562	0.39237	0.00018726	-0.97602	-0.00046581	-0.58365	-0.00027855	477.2501714956763	25.532	0.25985	25.532	25.415	25.675	0					13	6	3	0	0	0	0.28427	1	8755	8755		87.754	5.4493	1	487540	+		2703	21960	1666	1676	2723	2723					0.008417747979592605
AQTIVSLEEK	10	Unmodified	_AQTIVSLEEK_					0	0	0		ENSG00000142621|ENST00000688493|FHAD1;ENST00000483120.1_1_1:15684662-15690294:+|nuORF;nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1	ENSG00000142621|ENST00000688493|FHAD1	ENSG00000142621|ENST00000688493|FHAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098083496094	3	373.208161	1116.60265	3.2233	0.0012029	0.78366	0.00029247	4.0069	0.0014954	373.2086851413715	22.261	5.8436	22.261	21.953	27.797	0					242	115	5	0	0	0	0.43008	1	7535	7535		65.157	22.819	1	47596000			2704	4503	1667	1677	2724	2724					0.04901673577978727
AQTWDLRLG	9	Unmodified	_AQTWDLRLG_					0	0	0			REV__ENST00000464989.5_1_2:220308425-220308515:+|nuORF	REV__ENST00000464989.5_1_2:220308425-220308515:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.85858154296875	3	353.857574	1058.55089	1.4344	0.00050757	0.9367	0.00033146	2.3711	0.00083903	353.85805675186486	17.826	0.65968	17.826	17.515	18.175	0					44	13	6	0	0	0	0.47473	1	5181	5181		35.152	3.5178	1	14012000	+		2705	19407	1668	1678	2725	2725					0.023959746747323152
AQVVAIFTS	9	Unmodified	_AQVVAIFTS_					0	0	0			REV__nc|ENSG00000133475|P36268-2|GGT2P	REV__nc|ENSG00000133475|P36268-2|GGT2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2630310058594	2	468.263468	934.512382	0.033826	1.5839E-05	-1.2616	-0.00059077	-1.2278	-0.00057493	468.2629394951975	35.057	0.11541	35.057	34.99	35.106	0					7	4	2	0	0	0	0.48389	1	11502	11502		34.173	5.023	1	40614	+		2706	13509	1669	1679	2726	2726					0.04250669040231969
AQVWGSPL	8	Unmodified	_AQVWGSPL_					0	0	0		ENST00000573774.5_1_17:7297219-7297836:-|nuORF;ENST00000571541.5_1_17:7297219-7297795:-|nuORF	ENST00000573774.5_1_17:7297219-7297836:-|nuORF	ENST00000573774.5_1_17:7297219-7297836:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2291259765625	2	429.229428	856.444303	0.95087	0.00040814	-1.1711	-0.00050265	-0.22019	-9.4511E-05	429.2287852590011	40.681	0.24403	40.681	40.565	40.809	0					15	10	2	0	0	0	0.52345	1	16017	16017		57.811	13.28	1	194340			2707	10803	1670	1680	2727	2727					0.010338441802446141
AQVYLEEMSWN	11	Unmodified	_AQVYLEEMSWN_					0	0	0		ENST00000526042.5_1_11:31443660-31447922:+|nuORF;ENST00000527731.1_1_11:31436399-31447922:+|nuORF;ENST00000530125.1_1_11:31438740-31451945:+|nuORF;ENSG00000170946|ENST00000465995|DNAJC24	ENST00000526042.5_1_11:31443660-31447922:+|nuORF	ENST00000526042.5_1_11:31443660-31447922:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	685.3079223632812	2	685.308277	1368.602	0.24379	0.00016707	-0.37572	-0.00025748	-0.13193	-9.0412E-05	685.3080085693182	15.5	0.31774	15.5	15.417	15.735	0					31	13	4	0	0	0	0.56817	1	3371	3371		39.253	5.3312	1	2204900			2708	6268	1671	1681	2728	2728					-0.067554891333657
AQWCLALSL	9	Carbamidomethyl (C)	_AQWC(Carbamidomethyl (C))LALSL_	AQWC(1)LALSL		AQWC(57)LALSL		0	1	0			REV__nc|ENSG00000006625|O75223-4|GGCT	REV__nc|ENSG00000006625|O75223-4|GGCT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.52105712890625	3	354.519794	1060.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.496	1	16.496	15.996	16.996	0								0	0	0	0.1633	1	4725	4725		56.721	8.7615	1		+		2709	20918	1672	1682	2729	2729	720				0.009704005711455466
AQWDYRKS	8	Unmodified	_AQWDYRKS_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2583618164062	2	527.259248	1052.50394	0.2844	0.00014995	-1.8665	-0.00098414	-1.5821	-0.00083419	527.2583130460515	14.653	0.40205	14.653	14.525	14.927	0					14	8	2	0	0	0	0.66372	1	3845	3845		38.806	3.6541	1	374980	+		2710	15865	1673	1683	2730	2730					-0.020208848764013965
AQYGQGLLTK	10	Unmodified	_AQYGQGLLTK_					0	0	0			REV__TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant	REV__TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8001708984375	2	539.798206	1077.58186	1.4494	0.00078238	2.2405	0.0012094	3.6899	0.0019918	539.7996251725768	23.37	0.26678	23.37	23.263	23.529	0					9	5	3	0	0	0	0.31613	1	8033	8033		65.465	1.2581	1	248220	+		2711	16222	1674	1684	2731	2731					0.046171279889904326
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.22088623046875	3	395.220513	1182.63971	1.9871	0.00078534	-1.4132	-0.00055854	0.57386	0.0002268	395.2200161539917	26.234	0.10677	26.234	26.173	26.28	0					8	3	3	0	0	0	0.63851	1	7954	7954		29.551	2.5034	1	65648			2712	6460	1675	1685	2732	2732					0.055693899143989256
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.2204284667969	3	395.220513	1182.63971	0.69901	0.00027626	-0.88598	-0.00035016	-0.18697	-7.3893E-05	395.2201319662854	26.472	0.3235	26.472	26.379	26.702	0					15	7	4	0	0	0	0.28675	1	9126	9126		68.846	27.42	1	563720			2713	6460	1675	1685	2733	2733					0.055693899143989256
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.3273315429688	2	592.327131	1182.63971	0.2699	0.00015987	0.48588	0.0002878	0.75578	0.00044767	592.3273459062409	26.448	0.35893	26.448	26.356	26.715	0					17	8	3	0	0	0	0.010919	1	9131	9131		141.52	56.36	1	942670			2714	6460	1675	1685	2734	2734					0.055693899143989256
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.2203674316406	3	395.220513	1182.63971	0.10638	4.2042E-05	-0.44311	-0.00017513	-0.33673	-0.00013308	395.2203132759405	26.486	0.51923	26.486	26.376	26.895	0					20	10	4	0	0	0	0.36432	1	9494	9494		60.167	13.71	1	2152800			2715	6460	1675	1685	2735	2735					0.055693899143989256
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.220458984375	3	395.220513	1182.63971	-0.64998	-0.00025688	0.64763	0.00025596	-0.0023508	-9.291E-07	395.22071463681493	26.409	0.61847	26.409	26.25	26.868	0					29	12	4	0	0	0	0.034064	1	9336	9336		115.23	70.21	1	2346200			2716	6460	1675	1685	2736	2736					0.055693899143989256
AQYSPQQLAGK	11	Unmodified	_AQYSPQQLAGK_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000508319.1_1_5:43294149-43294911:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.8126220703125	2	595.811845	1189.60914	0.082897	4.9391E-05	0.86393	0.00051474	0.94683	0.00056413	596.3138409942284	27.347	0.26945	27.347	27.135	27.405	0					11	5	3	0	0	0	0.074075	1	9887	9887		96.034	41.311	1	141580			2717	2771	1676	1686	2737	2737					0.02191611529360671
ARAFVQRF	8	Unmodified	_ARAFVQRF_					0	0	0		ENSG00000189186|ENST00000451261|DCAF8L2;DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant;DCAF8L2|p.R219H|1|0.36|ENSG00000189186|chrX:27747551-27747551|G/A|missense_variant	ENSG00000189186|ENST00000451261|DCAF8L2	ENSG00000189186|ENST00000451261|DCAF8L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7827453613281	2	497.782693	993.550834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.222	1	20.222	19.722	20.722	0								0	0	0	1.7419	1	5645	5645		26.796	6.3143	1				2718	746	1677	1687	2738	2738					0.05380019465417263
ARAGPGSL	8	Unmodified	_ARAGPGSL_					0	0	0			REV__ENST00000598118.1_1_19:35506495-35517042:+|nuORF	REV__ENST00000598118.1_1_19:35506495-35517042:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.7061462402344	2	364.70612	727.397687	-0.70261	-0.00025624	0.80521	0.00029367	0.1026	3.742E-05	364.70638225515455	18.885	0.45556	18.885	18.697	19.152	0					24	14	2	0	0	0	0.65276	1	4964	4964		40.573	3.5441	1	123410	+		2719	20579	1678	1688	2739	2739					0.02308404348957538
ARAKAAARR	9	Unmodified	_ARAKAAARR_					0	0	0		ENST00000538711.5_1_3:49507611-49514302:+|nuORF;ENST00000545947.5_1_3:49507611-49508472:+|nuORF;ENST00000308775.6_1_3:49507623-49547947:+|nuORF;ENST00000541308.5_1_3:49507611-49530351:+|nuORF	ENST00000538711.5_1_3:49507611-49514302:+|nuORF	ENST00000538711.5_1_3:49507611-49514302:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.206298828125	3	324.20542	969.59443	2.9952	0.00097107	-0.31845	-0.00010324	2.6768	0.00086783	324.2052815361601	12.765	0.23002	12.765	12.64	12.87	0					10	5	3	0	0	0	0.53083	1	2811	2811		29.17	0	1	304840			2720	8534	1679	1689	2740	2740					0.10841628962543837
ARALHAVGLG	10	Unmodified	_ARALHAVGLG_					0	0	0			REV__ENSG00000125898|ENST00000381941|FAM110A	REV__ENSG00000125898|ENST00000381941|FAM110A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.1942443847656	3	322.194409	963.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.797	1	41.797	41.297	42.297	0								0	0	0	0.4201	1	16428	16428		17.468	2.6031	1		+		2721	14448	1680	1690	2741	2741					0.07816002119841414
ARARAREGA	9	Unmodified	_ARARAREGA_					0	0	0			REV__ENST00000460783.1_1_21:38071452-38071680:+|nuORF	REV__ENST00000460783.1_1_21:38071452-38071680:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.27154541015625	2	479.270481	956.52641	2.2844	0.0010949	0.24914	0.00011941	2.5336	0.0012143	479.27058311098165	22.614	0.36654	22.614	22.505	22.872	0					21	7	4	0	0	0	0.0792	1	7533	7533		84.916	5.4645	1	9084300	+		2722	19374	1681	1691	2742	2742					0.04640759311882903
ARARQPKL	8	Unmodified	_ARARQPKL_					0	0	0			REV__ENST00000494253.1_1_10:71144437-71146246:+|nuORF	REV__ENST00000494253.1_1_10:71144437-71146246:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.29498291015625	2	470.295968	938.577383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.692	1	34.692	34.192	35.192	0								0	0	0	1.7419	1	13392	13392		31.955	2.8053	1		+		2723	19746	1682	1692	2743	2743					0.10563708356744428
ARDPTTNLL	9	Unmodified	_ARDPTTNLL_					0	0	0			REV__ENST00000483205.1_1_3:47551637-47555080:-|nuORF	REV__ENST00000483205.1_1_3:47551637-47555080:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.774658203125	2	500.774731	999.534909	-0.13663	-6.8422E-05	0.26113	0.00013077	0.1245	6.2346E-05	500.7748297753202	33.534	0.32958	33.534	33.368	33.698	0					17	8	3	0	0	0	0.13267	1	12414	12414		71.877	17.101	1	637200	+		2724	15924	1683	1693	2744	2744					0.03512268437839339
ARDTCVILTV	10	Unmodified	_ARDTCVILTV_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.798583984375	2	545.799891	1089.58523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.099	1	36.099	35.599	36.599	0								0	0	0	0.05754	1	13997	13997		77.318	2.2743	1				2725	2125	1684	1694	2745	2745					0.0440205477134441
AREEVIRLD	9	Unmodified	_AREEVIRLD_					0	0	0		ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12	ENSG00000149292|ENST00000529221|TTC12	ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8073120117188	2	550.806562	1099.59857	1.8158	0.0010002	-0.33011	-0.00018183	1.4857	0.00081833	550.8064166401463	26.596	0.27024	26.596	26.486	26.756	0					9	5	2	0	0	0	0.3269	1	9425	9425		47.96	1.5027	1	665370			2726	4875	1685	1695	2746	2746					0.052756288749378655
ARETAIDELH	10	Unmodified	_ARETAIDELH_					0	0	0			REV__EEF2K|p.E196Rfs*22|3|0.31|ENSG00000103319|chr16:22251285-22251285|G/-|frameshift_variant	REV__EEF2K|p.E196Rfs*22|3|0.31|ENSG00000103319|chr16:22251285-22251285|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	385.5316467285156	3	385.531527	1153.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.571	1	13.571	13.071	14.071	0								0	0	0	0.4201	1	2679	2679		11.636	0	1		+		2727	12773	1686	1696	2747	2747					0.002107346326511106
AREVRMGKGT	10	Unmodified	_AREVRMGKGT_					0	0	0			REV__ENST00000432460.1_3_2:219523968-219524121:-|nuORF	REV__ENST00000432460.1_3_2:219523968-219524121:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8694152832031	3	368.869597	1103.58696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.616	1	45.616	45.116	46.116	0								0	0	0	0.3998	1	18274	18274		30.569	2.4874	1		+		2728	19177	1687	1697	2748	2748					0.03931108579968168
AREYRILL	8	Unmodified	_AREYRILL_					0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-3|FKBP15;FKBP15|p.K665Rfs*9|2|0.21|ENSG00000119321|chr9:113178722-113178722|T/-|frameshift_variant	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.2098693847656	3	345.209948	1032.60801	-0.70276	-0.0002426	0.64066	0.00022116	-0.062107	-2.144E-05	345.2101408529211	15.174	0.33307	15.174	14.939	15.272	0					44	14	4	0	0	0	0.64096	1	3356	3356		35.618	7.736	1	984170			2729	3107	1688	1698	2749	2749					0.09301441951151901
ARFQLFLRRY	10	Unmodified	_ARFQLFLRRY_					0	0	0		nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2642517089844	3	457.266568	1368.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.165	1	47.165	46.665	47.665	0								0	0	0	0.41137	1	15829	15829		27.047	5.2669	1				2730	6383	1689	1699	2750	2750					0.1082355795354033
ARFQPNKPF	9	Unmodified	_ARFQPNKPF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;ENST00000466440.1_1_1:52890958-52897138:-|nuORF	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8697509765625	3	368.869814	1103.58761	0.90052	0.00033217	-1.1463	-0.00042284	-0.2458	-9.0667E-05	368.8694685264771	20.883	2.0626	20.883	20.726	22.789	0					108	41	5	0	0	0	0.16002	1	6890	6890		66.429	8.1994	1	23871000			2731	3937	1690	1700	2751	2751					0.03996271291316589
ARGATTSPGVY	11	Unmodified	_ARGATTSPGVY_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.2786254882812	2	540.277638	1078.54072	-0.012349	-6.6719E-06	1.7416	0.00094093	1.7292	0.00093426	540.2789010956467	22.828	0.10643	22.828	22.748	22.854	0					8	4	3	0	0	0	0.68382	1	6780	6780		29.17	9.8101	1	57440			2732	11803	1691	1701	2752	2752					0.00459366949530704
ARGEKRSSRA	10	Unmodified	_ARGEKRSSRA_					0	0	0			REV__ENST00000274030.10_1_4:120133964-120135229:+|nuORF	REV__ENST00000274030.10_1_4:120133964-120135229:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.2102966308594	3	373.21101	1116.6112	-2.1079	-0.00078668	-1.1756	-0.00043874	-3.2835	-0.0012254	373.2106315873047	30.819	0.6319	30.819	30.533	31.164	0					24	17	2	0	0	0	0.72365	1	10534	10534		18.262	0.79408	1	83714	+		2733	18111	1692	1702	2753	2753					0.05756085057873861
ARGFSPHAG	9	Unmodified	_ARGFSPHAG_					0	0	0		COL22A1|p.S128G|1|0.3|ENSG00000169436|chr8:138878026-138878026|T/C|missense_variant	COL22A1|p.S128G|1|0.3|ENSG00000169436|chr8:138878026-138878026|T/C|missense_variant	COL22A1|p.S128G|1|0.3|ENSG00000169436|chr8:138878026-138878026|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2266845703125	2	450.227751	898.440949	-2.6045	-0.0011726	0.32663	0.00014706	-2.2779	-0.0010256	450.22789884296674	17.777	0.19075	17.777	17.672	17.863	0					10	4	3	0	0	0	0.20551	1	4495	4495		60.972	5.4677	1	515360			2734	604	1693	1703	2754	2754					-0.012334058737565101
ARGGRRRWHRG	11	Unmodified	_ARGGRRRWHRG_					0	0	0		ENST00000569248.5_1_16:730510-731029:+|nuORF	ENST00000569248.5_1_16:730510-731029:+|nuORF	ENST00000569248.5_1_16:730510-731029:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.5931396484375	3	455.59256	1363.75585	0.25404	0.00011574	0.44074	0.0002008	0.69478	0.00031654	455.5927585514463	25.517	0.18595	25.517	25.426	25.612	0					11	4	4	0	0	0	0.69983	1	8718	8718		27.644	3.4121	1	661890			2735	10780	1694	1704	2755	2755					0.08852191048345048
ARGRPERK	8	Unmodified	_ARGRPERK_					0	0	0		ENST00000526183.5_1_8:145724106-145726142:+|nuORF	ENST00000526183.5_1_8:145724106-145726142:+|nuORF	ENST00000526183.5_1_8:145724106-145726142:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2877502441406	2	485.288674	968.562795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.659	1	12.659	12.159	13.159	0								0	0	0	1.7419	1	2470	2470		7.1934	0.8807	1				2736	10375	1695	1705	2756	2756					0.07725636208613196
ARGRSYRK	8	Unmodified	_ARGRSYRK_					0	0	0			REV__ENST00000480451.1_1_22:17639677-17639998:-|nuORF	REV__ENST00000480451.1_1_22:17639677-17639998:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2876892089844	2	497.288674	992.562795	-0.057693	-2.869E-05	-2.4787	-0.0012326	-2.5363	-0.0012613	497.2876453099439	12.963	0.082371	12.963	12.912	12.994	0					5	3	2	0	0	0	0.78751	1	2508	2508		12.207	1.3413	1	272270	+		2737	19590	1696	1706	2757	2757					0.066216362086152
ARGSPWGAL	9	Unmodified	_ARGSPWGAL_					0	0	0			REV__ENST00000534574.5_1_11:117857246-117857426:+|nuORF	REV__ENST00000534574.5_1_11:117857246-117857426:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.74774169921875	2	457.745776	913.477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.033	1	28.033	27.533	28.533	0								0	0	0	0.28164	1	8710	8710		38.806	3.1879	1		+		2738	20053	1697	1707	2758	2758					0.016800513030943875
ARGSVAAMI	9	Unmodified	_ARGSVAAMI_					0	0	0			REV__ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	REV__ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2435302734375	2	438.242012	874.469472	2.6627	0.0011669	1.4666	0.00064273	4.1294	0.0018097	438.242614707663	37.493	0.45364	37.493	37.383	37.837	0					13	9	2	0	0	0	0.37197	1	14675	14675		44.117	1.7207	1	491290	+		2739	12159	1698	1708	2759	2759					0.027215757111662242
ARIPGSRLE	9	Unmodified	_ARIPGSRLE_					0	0	0		ENST00000362042.7_1_17:46137462-46137492:+|nuORF	ENST00000362042.7_1_17:46137462-46137492:+|nuORF	ENST00000362042.7_1_17:46137462-46137492:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7902526855469	2	499.790715	997.566878	0.66598	0.00033285	-1.2039	-0.00060169	-0.53789	-0.00026883	499.79007260190343	29.009	0.17196	29.009	28.929	29.101	0					9	4	3	0	0	0	0.095583	1	10325	10325		64.207	0.901	1	457720			2740	8887	1699	1709	2760	2760					0.06799680911660744
ARIPLTSAPR	10	Unmodified	_ARIPLTSAPR_					0	0	0		ENST00000517420.1_1_8:23193692-23193839:+|nuORF	ENST00000517420.1_1_8:23193692-23193839:+|nuORF	ENST00000517420.1_1_8:23193692-23193839:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.2030029296875	3	361.220735	1080.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.74	1	21.74	21.24	22.24	0								0	0	0	0.4201	1	6356	6356		13.508	1.3013	1				2741	10270	1700	1710	2761	2761					0.10328229354126961
ARKDRCKSR	9	Unmodified	_ARKDRCKSR_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.3118896484375	2	560.311823	1118.60909	-0.051903	-2.9082E-05	0.20297	0.00011372	0.15106	8.4642E-05	560.3119802464861	27.195	0.51247	27.195	27.089	27.601	0					21	10	4	0	0	0	0.027316	1	9834	9834		111.65	111.65	1	2213800	+		2742	12858	1701	1711	2762	2762					0.054533330483764075
ARKKHAGG	8	Unmodified	_ARKKHAGG_					0	0	0			REV__RAPGEF6|p.L1388*|1|0.25|ENSG00000158987|chr5:131431161-131431161|A/-|frameshift_variant	REV__RAPGEF6|p.L1388*|1|0.25|ENSG00000158987|chr5:131431161-131431161|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.7457275390625	2	412.746111	823.477669	1.0622	0.00043842	-1.3063	-0.00053916	-0.24409	-0.00010075	412.74547295375055	49.521	0.25481	49.521	49.381	49.636	0					15	9	2	0	0	0	0.78999	1	18594	18594		13.775	4.953	1	131570	+		2743	15696	1702	1712	2763	2763					0.05886890742806372
ARKLEAIFQ	9	Unmodified	_ARKLEAIFQ_					0	0	0		CD2BP2|p.P325Lfs*58|2|0.27|ENSG00000169217|chr16:30353037-30353037|G/-|frameshift_variant	CD2BP2|p.P325Lfs*58|2|0.27|ENSG00000169217|chr16:30353037-30353037|G/-|frameshift_variant	CD2BP2|p.P325Lfs*58|2|0.27|ENSG00000169217|chr16:30353037-30353037|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3184204101562	2	538.316566	1074.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.054	1	27.054	26.554	27.554	0								0	0	0	0.069826	1	8800	8800		74.255	8.4519	1				2744	427	1703	1713	2764	2764					0.08425424605525222
ARKSHLTG	8	Unmodified	_ARKSHLTG_					0	0	0		nc|ENSG00000204179|Q4JDL3-5|PTPN20;nc|ENSG00000204179|Q4JDL3-6|PTPN20;nc|ENSG00000204179|Q4JDL3-11|PTPN20;nc|ENSG00000204179|Q4JDL3-4|PTPN20;nc|ENSG00000204179|Q4JDL3-3|PTPN20;nc|ENSG00000204179|Q4JDL3-2|PTPN20;ENSG00000204179|ENST00000374339|PTPN20	nc|ENSG00000204179|Q4JDL3-5|PTPN20	nc|ENSG00000204179|Q4JDL3-5|PTPN20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.251220703125	2	435.251226	868.487899	0.67326	0.00029304	0.077328	3.3657E-05	0.75059	0.0003267	435.2512177175312	44.806	0.28884	44.806	44.689	44.978	0					26	17	2	0	0	0	0.70055	1	16749	16749		33.516	1.5607	1	81708			2745	7679	1704	1714	2765	2765					0.04839453677379879
ARLAPGAGPL	10	Unmodified	_ARLAPGAGPL_					0	0	0			REV__ENST00000301327.4_1_8:145734706-145735743:+|nuORF	REV__ENST00000301327.4_1_8:145734706-145735743:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.77685546875	2	461.777077	921.5396	-1.1439	-0.00052822	0.8371	0.00038655	-0.30679	-0.00014167	461.77747176621	18.272	0.16505	18.272	18.195	18.36	0					11	6	3	0	0	0	0.54387	1	4751	4751		40.573	4.9543	1	187520	+		2746	18204	1705	1715	2766	2766					0.0756919737127646
ARLGLRAE	8	Unmodified	_ARLGLRAE_					0	0	0			REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2666015625	2	443.266876	884.519199	-0.24721	-0.00010958	-0.3659	-0.00016219	-0.61312	-0.00027177	443.26673281136374	21.534	0.26805	21.534	21.424	21.692	0					12	5	3	0	0	0	0.44433	1	7164	7164		65.803	12.452	1	1024900	+		2747	12915	1706	1716	2767	2767					0.07232026711460549
ARLKDKVLQ	9	Unmodified	_ARLKDKVLQ_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.56085205078125	3	357.560869	1069.66078	0.30429	0.0001088	-0.48744	-0.00017429	-0.18315	-6.5488E-05	357.56075271089134	18.064	0.1673	18.064	17.955	18.122	0					5	3	2	0	0	0	0.1115	1	5492	5492		72.879	0	1	473280	+		2748	16712	1707	1717	2768	2768					0.1287340001395023
ARLLPSGRE	9	Unmodified	_ARLLPSGRE_					0	0	0			REV__ENST00000332783.11_1_15:101142945-101143215:+|nuORF	REV__ENST00000332783.11_1_15:101142945-101143215:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7903747558594	2	499.790715	997.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.755	1	28.755	28.255	29.255	0								0	0	0	0.27521	1	9301	9301		19.104	0	1		+		2749	18390	1708	1718	2769	2769					0.06799680911660744
ARLQQIPNIVN	11	Unmodified	_ARLQQIPNIVN_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-3|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-3|CCDC148	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	633.3689575195312	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.175	1	53.175	52.675	53.675	0								0	0	0	0.45674	1	16248	16248		19.997	0	1		+		2750	12357	1709	1719	2770	2770					0.1033955510006308
ARLRDLYPD	9	Unmodified	_ARLRDLYPD_					0	0	0		nc|ENSG00000185013|Q96P26-3|NT5C1B;ENSG00000185013|ENST00000304081|NT5C1B;nc|ENSG00000185013|Q96P26-4|NT5C1B;nc|ENSG00000185013|Q96P26|NT5C1B	nc|ENSG00000185013|Q96P26-3|NT5C1B	nc|ENSG00000185013|Q96P26-3|NT5C1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.538330078125	3	373.536612	1117.58801	3.2262	0.0012051	0.89956	0.00033602	4.1258	0.0015411	373.5369346539816	31.376	0.85861	31.376	31.141	32	0					50	17	5	0	0	0	0.35045	1	11697	11697		52.937	52.937	1	5314800			2751	7055	1710	1720	2771	2771					0.03391646220529765
ARMEPSPV	8	Unmodified	_ARMEPSPV_					0	0	0			REV__ENST00000381261.8_1_X:1718342-1718525:+|nuORF	REV__ENST00000381261.8_1_X:1718342-1718525:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7271728515625	2	443.726195	885.437837	-0.36057	-0.00015999	2.2672	0.001006	1.9066	0.00084602	443.7270322916848	38.67	0.18142	38.67	38.605	38.786	0					12	8	2	0	0	0	0.66372	1	14700	14700		38.806	3.6054	1	144120	+		2752	18783	1711	1721	2772	2772					-0.009464170427918361
ARMTREAKAA	10	Unmodified	_ARMTREAKAA_					0	0	0		SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.869384765625	3	368.869597	1103.58696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.075	1	51.075	50.575	51.575	0								0	0	0	0.38093	1	20038	20038		36.318	3.5052	1				2753	22392	1712	1722	2773	2773					0.03931108579968168
ARPATPTIGP	10	Unmodified	_ARPATPTIGP_					0	0	0			REV__ENST00000263026.9_1_16:22217644-22236999:+|nuORF	REV__ENST00000263026.9_1_16:22217644-22236999:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.5222473144531	3	327.522303	979.545079	0.52928	0.00017335	-0.54989	-0.0001801	-0.020616	-6.7522E-06	327.5221177750486	21.775	0.27103	21.775	21.596	21.867	0					16	6	3	0	0	0	0.70877	1	6980	6980		26.063	6.0329	1	735190	+		2754	18038	1713	1723	2774	2774					0.05448876163075056
ARPFQDMPVI	10	Unmodified	_ARPFQDMPVI_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	587.3102416992188	2	587.307884	1172.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.058	1	33.058	32.558	33.558	0								0	0	0	0.33107	1	10725	10725		45.972	1.5951	1		+		2755	21113	1714	1724	2775	2775					0.0218176100825076
ARPGAGSL	8	Unmodified	_ARPGAGSL_					0	0	0		PNCK|p.K342Qfs*?|1|0.53|ENSG00000130822|chrX:153670465-153670466|-/G|frameshift_variant	PNCK|p.K342Qfs*?|1|0.53|ENSG00000130822|chrX:153670465-153670466|-/G|frameshift_variant	PNCK|p.K342Qfs*?|1|0.53|ENSG00000130822|chrX:153670465-153670466|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.7064208984375	2	364.70612	727.397687	0.095042	3.4662E-05	-0.093232	-3.4002E-05	0.0018096	6.5998E-07	364.70605802295654	18.83	0.5195	18.83	18.646	19.166	0					28	15	2	0	0	0	0.7126	1	4865	4865		31.955	0	1	336850			2756	11946	1715	1725	2776	2776					0.02308404348957538
ARPGVSVWR	9	Unmodified	_ARPGVSVWR_					0	0	0		ENST00000441890.5_1_1:154193404-154197599:+|nuORF	ENST00000441890.5_1_1:154193404-154197599:+|nuORF	ENST00000441890.5_1_1:154193404-154197599:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1977233886719	3	343.198042	1026.5723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.832	1	45.832	45.332	46.332	0								0	0	0	0.35377	1	18362	18362		24.519	2.8334	1				2757	9582	1716	1726	2777	2777					0.06007404494130242
ARPPQYFQQ	9	Unmodified	_ARPPQYFQQ_					0	0	0			REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3	REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.7874755859375	2	567.788173	1133.56179	0.17213	9.7735E-05	-0.3597	-0.00020423	-0.18757	-0.0001065	567.787965520063	11.876	0.93318	11.876	11.786	12.719	0					64	31	4	0	0	0	0.5879	1	2363	2363		23.042	0	1	2110000	+		2758	13335	1717	1727	2778	2778					0.0003537704901646066
ARPQSMENSP	10	Unmodified	_ARPQSMENSP_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7586669921875	2	558.758755	1115.50296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.453	1	20.453	19.953	20.953	0								0	0	0	0.4201	1	5477	5477		14.137	0	1				2759	4172	1718	1728	2779	2779					-0.05017467307584411
ARPSLRGLE	9	Unmodified	_ARPSLRGLE_					0	0	0			REV__nc|ENSG00000113916|P41182-2|BCL6	REV__nc|ENSG00000113916|P41182-2|BCL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7901916503906	2	499.790715	997.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.828	1	28.828	28.328	29.328	0								0	0	0	0.25045	1	9621	9621		29.17	6.1276	1		+		2760	14059	1719	1729	2780	2780					0.06799680911660744
ARQGFLLTSK	10	Unmodified	_ARQGFLLTSK_					0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.2203369140625	3	374.220624	1119.64004	-0.12242	-4.5813E-05	-0.071763	-2.6855E-05	-0.19419	-7.2668E-05	374.22060957497246	31.2	0.28604	31.2	31.07	31.356	0					17	8	3	0	0	0	0.70877	1	10708	10708		20.03	0	1	329290	+		2761	16375	1720	1730	2781	2781					0.08500809634256257
ARQNTLKYKW	10	Unmodified	_ARQNTLKYKW_					0	0	0			REV__ENST00000489985.1_1_1:46661446-46663526:-|nuORF	REV__ENST00000489985.1_1_1:46661446-46663526:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.5784606933594	3	436.578811	1306.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.728	1	26.728	26.228	27.228	0								0	0	0	0.36846	1	8438	8438		40.058	3.7405	1		+		2762	13363	1721	1731	2782	2782					0.07351572445622878
ARQPLPVPLQ	10	Unmodified	_ARQPLPVPLQ_					0	0	0			REV__ENST00000460939.5_1_11:62369776-62370417:-|nuORF	REV__ENST00000460939.5_1_11:62369776-62370417:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.8385009765625	2	559.837665	1117.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.455	1	39.455	38.955	39.955	0								0	0	0	0.39244	1	15025	15025		32.812	0.85756	1		+		2763	19377	1722	1732	2783	2783					0.10665400013931503
ARQTNHVA	8	Unmodified	_ARQTNHVA_					0	0	0			REV__ENSG00000229474|ENST00000682850|PATL2	REV__ENSG00000229474|ENST00000682850|PATL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.73956298828125	2	448.738483	895.462413	0.62178	0.00027901	-1.6504	-0.00074058	-1.0286	-0.00046157	448.7393363412609	29.209	0.41071	29.209	29.046	29.456	0					32	10	4	0	0	0	0.63077	1	10416	10416		44.117	3.5442	1	1722400	+		2764	17639	1723	1733	2784	2784					0.010499791549477777
ARRARPEKQ	9	Unmodified	_ARRARPEKQ_					0	0	0		ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.3275146484375	2	556.325788	1110.63702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.675	1	17.675	17.175	18.175	0								0	0	0	0.17378	1	5029	5029		54.776	6.8168	1				2765	8434	1724	1734	2785	2785					0.0861297930011915
ARRDEDADQ	9	Unmodified	_ARRDEDADQ_					0	0	0			REV__nc|ENSG00000168404|Q8NB16-2|MLKL	REV__nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2417602539062	2	538.241783	1074.46901	0.29778	0.00016028	-0.6928	-0.00037289	-0.39502	-0.00021262	538.2415502389125	24.467	0.26795	24.467	24.377	24.645	0					7	5	2	0	0	0	0.58342	1	8589	8589		23.523	0.48021	1	497060	+		2766	16256	1725	1735	2786	2786					-0.06524172475019441
ARREIQTLM	9	Unmodified	_ARREIQTLM_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A;HSPA12A|p.D650Tfs*11|1|0.25|ENSG00000165868|chr10:116674861-116674861|C/-|frameshift_variant	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.21051025390625	3	373.209731	1116.60736	0.84729	0.00031622	-0.31855	-0.00011889	0.52875	0.00019733	373.20970788303765	45.869	0.57747	45.869	45.449	46.026	0					45	32	2	0	0	0	0.5741	1	17711	17711		24.519	7.0512	1	99626			2767	5836	1726	1736	2787	2787					0.053722792397593366
ARREIQTLM	9	Unmodified	_ARREIQTLM_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A;HSPA12A|p.D650Tfs*11|1|0.25|ENSG00000165868|chr10:116674861-116674861|C/-|frameshift_variant	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2099914550781	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.599	1	50.599	50.099	51.099	0								0	0	0	0.31838	1	18941	18941		31.53	3.4483	1				2768	5836	1726	1736	2788	2788					0.053722792397593366
ARRITEVECCL	11	Unmodified	_ARRITEVECCL_					0	0	0			REV__ENSG00000110092|ENST00000227507|CCND1	REV__ENSG00000110092|ENST00000227507|CCND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	646.8275756835938	2	646.826114	1291.63768	2.0479	0.0013247	-0.19321	-0.00012497	1.8547	0.0011997	646.8259065105937	29.361	0.15033	29.361	29.295	29.446	0					8	3	3	0	0	0	0.78104	1	10866	10866		19.104	0	1	155370	+		2769	13926	1727	1737	2789	2789					0.003522698426650095
ARRKSGDSIQ	10	Unmodified	_ARRKSGDSIQ_					0	0	0		nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;ENSG00000113231|ENST00000264917|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20977783203125	3	373.207266	1116.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.37	1	54.37	53.87	54.87	0								0	0	0	0.39264	1	20769	20769		32.751	10.189	1				2770	2787	1728	1738	2790	2790					0.046332629637163336
ARRKTNMVI	9	Unmodified	_ARRKTNMVI_					0	0	0		ENST00000398988.7_2_17:25950782-25950866:+|nuORF	ENST00000398988.7_2_17:25950782-25950866:+|nuORF	ENST00000398988.7_2_17:25950782-25950866:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.8189697265625	2	544.821492	1087.62843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.992	1	26.992	26.492	27.492	0								0	0	0	0.29356	1	8771	8771		15.642	0	1				2771	9235	1729	1739	2791	2791					0.08812289339289237
ARRRPPAG	8	Unmodified	_ARRRPPAG_					0	0	0		ENST00000323039.9_2_19:40321124-40324722:-|nuORF;ENST00000593685.5_2_19:40321124-40324128:-|nuORF	ENST00000323039.9_2_19:40321124-40324722:-|nuORF	ENST00000323039.9_2_19:40321124-40324722:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.7659912109375	2	440.764835	879.515117	2.6342	0.0011611	-0.21203	-9.3456E-05	2.4222	0.0010676	440.7648691792449	14.63	0.6251	14.63	14.12	14.745	0					27	12	3	0	0	0	0.68754	1	3555	3555		35.201	35.201	1	1024600			2772	8629	1730	1740	2792	2792					0.07053982008415005
ARRSHQTAKVR	11	Unmodified	_ARRSHQTAKVR_					0	0	0			REV__ENST00000322177.5_1_15:75247781-75248108:-|nuORF	REV__ENST00000322177.5_1_15:75247781-75248108:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	655.380615234375	2	655.381626	1308.7487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.765	1	53.765	53.265	54.265	0								0	0	0	0.45674	1	15837	15837		12.812	0	1		+		2773	18331	1731	1741	2793	2793					0.10667413657233737
ARRSPWPLH	9	Unmodified	_ARRSPWPLH_					0	0	0		GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant;GGTLC1|p.G130Afs*22|1|0.4|ENSG00000149435|chr20:23985890-23985890|C/-|frameshift_variant	GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant	GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	373.8769836425781	3	373.877192	1118.60975	0.50166	0.00018756	-1.3584	-0.00050786	-0.85671	-0.0003203	373.8767454085391	26.946	0.17311	26.946	26.85	27.023	0					11	5	3	0	0	0	0.27781	1	8243	8243		58.782	4.0596	1	319960			2774	11155	1732	1742	2794	2794					0.05518495759747566
ARRSPWPLH	9	Unmodified	_ARRSPWPLH_					0	0	0		GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant;GGTLC1|p.G130Afs*22|1|0.4|ENSG00000149435|chr20:23985890-23985890|C/-|frameshift_variant	GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant	GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.87664794921875	3	373.877192	1118.60975	0.79128	0.00029584	-1.5719	-0.00058772	-0.78067	-0.00029188	373.87650868376045	27.171	0.66732	27.171	26.969	27.636	0					41	16	4	0	0	0	0.30268	1	9456	9456		56.721	19.213	1	2902200			2775	11155	1732	1742	2795	2795					0.05518495759747566
ARSHEGQLQ	9	Unmodified	_ARSHEGQLQ_					0	0	0			REV__TXLNB|p.P545Lfs*2|1|0.31|ENSG00000164440|chr6:139242947-139242947|G/-|frameshift_variant	REV__TXLNB|p.P545Lfs*2|1|0.31|ENSG00000164440|chr6:139242947-139242947|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2598876953125	2	513.259779	1024.50501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.614	1	15.614	15.114	16.114	0								0	0	0	0.34845	1	4304	4304		25.574	0.12388	1		+		2776	15988	1733	1743	2796	2796					-0.0062667050747222675
ARSIASRAE	9	Unmodified	_ARSIASRAE_					0	0	0			REV__ENST00000479871.1_1_9:116172333-116172573:-|nuORF	REV__ENST00000479871.1_1_9:116172333-116172573:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7648620605469	2	480.764697	959.514842	-0.10898	-5.2394E-05	0.056176	2.7007E-05	-0.052805	-2.5387E-05	480.76471809789	15.983	0.16673	15.983	15.88	16.047	0					7	3	3	0	0	0	0.38666	1	4469	4469		42.864	5.7052	1	565840	+		2777	15377	1734	1744	2797	2797					0.033465174979028234
ARSLVAGQTF	10	Unmodified	_ARSLVAGQTF_					0	0	0		ENST00000450728.1_1_2:200334820-200335477:+|nuORF	ENST00000450728.1_1_2:200334820-200335477:+|nuORF	ENST00000450728.1_1_2:200334820-200335477:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2929077148438	2	525.290548	1048.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.973	1	42.973	42.473	43.473	0								0	0	0	0.3185	1	17178	17178		47.96	0.30219	1				2778	9647	1735	1745	2798	2798					0.044202611917853574
ARSRRGGK	8	Unmodified	_ARSRRGGK_					0	0	0			REV__ENST00000406638.6_1_11:1892044-1892302:+|nuORF	REV__ENST00000406638.6_1_11:1892044-1892302:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2666931152344	2	444.267742	886.52093	-0.37222	-0.00016536	-1.596	-0.00070904	-1.9682	-0.00087441	444.2670142793406	20.967	0.1304	20.967	20.88	21.01	0					7	3	3	0	0	0	0.66372	1	6597	6597		38.806	5.2906	1	385510	+		2779	18976	1736	1746	2799	2799					0.07313080520088988
ARSSPLLP	8	Unmodified	_ARSSPLLP_					0	0	0			REV__INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant	REV__INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.7502746582031	2	420.750527	839.486502	0.86847	0.00036541	-1.7078	-0.00071857	-0.83935	-0.00035316	420.74985838734074	36.834	0.50121	36.834	36.564	37.065	0					25	15	2	0	0	0	0.72381	1	14351	14351		30.504	1.3541	1	186200	+		2780	14091	1737	1747	2800	2800					0.06033819588606093
ARTCLLFVFR	10	Unmodified	_ARTCLLFVFR_					0	0	0			REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;REV__nc|ENSG00000100888|Q9HCK8-2|CHD8;REV__CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.2341613769531	3	409.233988	1224.68013	3.4332	0.001405	-1.5144	-0.00061975	1.9188	0.00078522	409.23326668301735	30.36	0.1758	30.36	30.287	30.463	0					14	5	4	0	0	0	0.70967	1	9956	9956		20.837	1.5745	1	276240	+		2781	12458;12455;12459	1738	1748	2801	2801					0.0767803303317578
ARTMLAVIIP	10	Unmodified	_ARTMLAVIIP_					0	0	0			REV__PDSS1|p.A145T|1|0.35|ENSG00000148459|chr10:26709734-26709734|G/A|missense_variant	REV__PDSS1|p.A145T|1|0.35|ENSG00000148459|chr10:26709734-26709734|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.2221374511719	3	362.223088	1083.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.458	1	49.458	48.958	49.958	0								0	0	0	0.4201	1	14958	14958		22.58	5.8623	1		+		2782	21355	1739	1749	2802	2802					0.10895825910347412
ARTMMKVM	8	Unmodified	_ARTMMKVM_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.249755859375	2	484.247926	966.481299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.773	1	42.773	42.273	43.273	0								0	0	0	1.7419	1	17091	17091		60.972	5.4677	1				2783	5134;11594	1740	1750	2803	2803					-0.003282668615042894
ARTRERLG	8	Unmodified	_ARTRERLG_					0	0	0		ENST00000606998.1_1_6:138189157-138189262:-|nuORF	ENST00000606998.1_1_6:138189157-138189262:-|nuORF	ENST00000606998.1_1_6:138189157-138189262:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7794189453125	2	479.780682	957.546811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.003	1	48.003	47.503	48.503	0								0	0	0	1.7419	1	19107	19107		24.203	1.1603	1				2784	11088	1741	1751	2804	2804					0.06633929971701491
ARTTTDNTVL	10	Unmodified	_ARTTTDNTVL_					0	0	0		ENST00000494197.1_1_5:31847735-31848014:+|nuORF	ENST00000494197.1_1_5:31847735-31848014:+|nuORF	ENST00000494197.1_1_5:31847735-31848014:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2877197265625	2	546.288202	1090.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.923	1	44.923	44.423	45.423	0								0	0	0	0.30854	1	17996	17996		49.536	1.8787	1				2785	10094	1742	1752	2805	2805					0.020193322583736517
ARVIHIINAE	10	Unmodified	_ARVIHIINAE_					0	0	0		nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.22430419921875	3	379.224257	1134.65094	0.77306	0.00029316	-0.42051	-0.00015947	0.35255	0.0001337	379.2240557136744	12.943	0.15612	12.943	12.878	13.034	0					7	4	3	0	0	0	0.70877	1	2844	2844		20.03	4.0237	1	131330			2786	1383	1743	1753	2806	2806					0.08900212008552444
ARVPPTSHVGP	11	Unmodified	_ARVPPTSHVGP_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2101135253906	3	373.208607	1116.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.202	1	43.202	42.702	43.702	0								0	0	0	0.44116	1	16919	16919		30.569	4.5055	1				2787	4415	1744	1754	2807	2807					0.050353524574120456
ARVSCPSPHPS	11	Unmodified	_ARVSCPSPHPS_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.2775268554688	2	569.277115	1136.53968	1.3093	0.00074534	0.098465	5.6054E-05	1.4077	0.00080139	569.2773239980526	34.115	0.15391	34.115	33.999	34.153	0					6	4	2	0	0	0	0.64323	1	12051	12051		23.523	0	1	90752			2788	960	1745	1755	2808	2808					-0.02313170691036248
ARVTFVHKTK	10	Unmodified	_ARVTFVHKTK_					0	0	0			REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.8561401367188	2	593.85639	1185.69823	-0.54545	-0.00032392	-0.16937	-0.00010058	-0.71481	-0.0004245	593.8562799545383	37.343	0.31887	37.343	37.244	37.562	0					39	17	3	0	0	0	0.54861	1	12615	12615		40.058	40.058	1	508400	+		2789	13366	1746	1756	2809	2809					0.11280491279558191
ARVVLQNN	8	Unmodified	_ARVVLQNN_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.26434326171875	2	457.264333	912.514114	-0.43499	-0.0001989	1.0504	0.0004803	0.6154	0.0002814	457.2646718735008	47.337	0.91858	47.337	47.131	48.049	0					60	48	2	0	0	0	0.77246	1	19079	19079		24.203	2.2429	1	78421	+		2790	13642	1747	1757	2810	2810					0.054357228488470355
ARWRYRCWERR	11	Unmodified	_ARWRYRCWERR_					0	0	0		ENST00000328599.4_1_8:125463328-125463391:+|nuORF	ENST00000328599.4_1_8:125463328-125463391:+|nuORF	ENST00000328599.4_1_8:125463328-125463391:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.6148681640625	3	546.616265	1636.82697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.288	1	40.288	39.788	40.788	0								0	0	0	0.45674	1	15985	15985		5.6988	2.0797	1				2791	8661	1748	1758	2811	2811					0.03402522970827704
ARYLLGKKQ	9	Unmodified	_ARYLLGKKQ_					0	0	0			REV__DNAJB12|p.E337K|1|0.21|ENSG00000148719|chr10:72336623-72336623|C/T|missense_variant	REV__DNAJB12|p.E337K|1|0.21|ENSG00000148719|chr10:72336623-72336623|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8324584960938	2	538.832383	1075.65021	0.69076	0.0003722	-0.29401	-0.00015842	0.39675	0.00021378	538.8322958823428	14.018	0.15919	14.018	13.961	14.12	0					5	3	2	0	0	0	0.37197	1	3405	3405		44.117	4.0586	1	103890	+		2792	12731	1749	1759	2812	2812					0.11541417359512707
ASAAAALVLK	10	Unmodified	_ASAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.78692626953125	2	457.78711	913.559667	-0.40282	-0.00018441	-0.71471	-0.00032718	-1.1175	-0.00051159	457.7868055529067	32.292	0.15655	32.292	32.189	32.345	0					11	7	2	0	0	0	0.021567	1	10418	10418		124.08	49.825	1	120560			2793	4144	1750	1760	2813	2813					0.09942948311220334
ASAAAALVLK	10	Unmodified	_ASAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.78656005859375	2	457.78711	913.559667	-0.63236	-0.00028949	-0.67675	-0.00030981	-1.3091	-0.00059929	457.786815893477	32.579	0.17104	32.579	32.454	32.625	0					8	4	2	0	0	0	0.018513	1	11960	11960		126.24	47.979	1	731790			2794	4144	1750	1760	2814	2814					0.09942948311220334
ASAAAALVLK	10	Unmodified	_ASAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.78680419921875	2	457.78711	913.559667	-0.65149	-0.00029824	0.23867	0.00010926	-0.41282	-0.00018898	457.7870854201262	32.529	0.12286	32.529	32.432	32.555	0					6	3	2	0	0	0	0.31613	1	12358	12358		65.465	21.088	1	97969			2795	4144	1750	1760	2815	2815					0.09942948311220334
ASAAAALVLK	10	Unmodified	_ASAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7868957519531	2	457.78711	913.559667	0.87947	0.00040261	-1.2684	-0.00058067	-0.38895	-0.00017805	457.7865729022622	32.464	0.51991	32.464	32.355	32.875	0					24	10	4	0	0	0	0.073977	1	12253	12253		101.25	0	1	2674200			2796	4144	1750	1760	2816	2816					0.09942948311220334
ASAAALQAQ	9	Unmodified	_ASAAALQAQ_					0	0	0			REV__ENST00000481583.1_1_1:93821317-93826193:+|nuORF	REV__ENST00000481583.1_1_1:93821317-93826193:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.72210693359375	2	415.721967	829.429381	0.065692	2.731E-05	-0.11324	-4.7076E-05	-0.047546	-1.9766E-05	415.7219079808676	12.61	0.30097	12.61	12.398	12.699	0					10	7	2	0	0	0	0.071197	1	2851	2851		87.754	2.8388	1	91095	+		2797	14198	1751	1761	2817	2817					0.00784352312223291
ASAAASGGLLK	11	Unmodified	_ASAAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2716369628906	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.045	1	25.045	24.545	25.545	0								0	0	0	0.0018453	1	8507	8507		117.53	40.208	1				2798	6530	1752	1762	2818	2818					0.054611699262068214
ASAAASGGLLK	11	Unmodified	_ASAAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2717590332031	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.843	1	24.843	24.343	25.343	0								0	0	0	0.16598	1	7809	7809		66.962	19.002	1				2799	6530	1752	1762	2819	2819					0.054611699262068214
ASAAASGGLLK	11	Unmodified	_ASAAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2713928222656	2	473.271824	944.529095	0.65725	0.00031106	-0.44729	-0.00021169	0.20996	9.9369E-05	473.2713565787246	24.906	0.54748	24.906	24.513	25.06	0					21	11	4	0	0	0	0.00055771	1	8663	8663		139.38	53.52	1	1086700			2800	6530	1752	1762	2820	2820					0.054611699262068214
ASAAGVQR	8	Unmodified	_ASAAGVQR_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.2089538574219	2	380.209027	758.403501	0.82282	0.00031284	-1.0844	-0.00041231	-0.26162	-9.9469E-05	380.2086235029104	14.781	0.39097	14.781	14.693	15.084	0					16	9	3	0	0	0	0.23367	1	3685	3685		120.62	3.7174	1	2233100			2801	11470	1753	1763	2821	2821					0.01463502860610788
ASAAGVQR	8	Unmodified	_ASAAGVQR_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	380.2090148925781	2	380.209027	758.403501	3.5268	0.0013409	-3.2957	-0.001253	0.23109	8.7864E-05	380.20788843620574	14.478	0.094999	14.478	14.429	14.524	0					6	4	2	0	0	0	0.30437	1	3143	3143		82.305	2.854	1	62832			2802	11470	1753	1763	2822	2822					0.01463502860610788
ASAAGVQR	8	Unmodified	_ASAAGVQR_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.20892333984375	2	380.209027	758.403501	0.22468	8.5424E-05	-0.49566	-0.00018845	-0.27098	-0.00010303	380.2088379866223	14.757	0.21572	14.757	14.646	14.862	0					10	4	3	0	0	0	0.24751	1	3905	3905		147.69	4.5865	1	1092400			2803	11470	1753	1763	2823	2823					0.01463502860610788
ASAAGVQR	8	Unmodified	_ASAAGVQR_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.2090148925781	2	380.209027	758.403501	0.4969	0.00018893	-0.5636	-0.00021429	-0.0667	-2.536E-05	380.208762258536	14.739	0.26384	14.739	14.68	14.943	0					8	5	2	0	0	0	0.23367	1	3898	3898		120.62	3.7174	1	1513700			2804	11470	1753	1763	2824	2824					0.01463502860610788
ASAAGVQR	8	Unmodified	_ASAAGVQR_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.20892333984375	2	380.209027	758.403501	-0.4872	-0.00018524	0.22198	8.4398E-05	-0.26522	-0.00010084	380.2090947082215	14.72	0.26788	14.72	14.609	14.877	0					11	5	3	0	0	0	0.23527	1	3734	3734		133.81	13.192	1	1208500			2805	11470	1753	1763	2825	2825					0.01463502860610788
ASAALVDKCL	10	Unmodified	_ASAALVDKCL_					0	0	0			REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.76763916015625	2	495.76806	989.521567	0.73485	0.00036431	3.9549	0.0019607	4.6898	0.002325	495.77006703357273	33.832	0.71105	33.832	33.26	33.971	0					23	18	2	0	0	0	0.3337	1	12568	12568		63.534	10.445	1	94696	+		2806	14549	1754	1764	2826	2826					0.026386943342458835
ASAAVLFHK	9	Unmodified	_ASAAVLFHK_					0	0	0		ENSG00000108187|ENST00000358769|PBLD;ENST00000478192.1_1_10:70055990-70056739:-|nuORF;nc|ENSG00000108187|P30039-2|PBLD	ENSG00000108187|ENST00000358769|PBLD	ENSG00000108187|ENST00000358769|PBLD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2713317871094	2	472.271627	942.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.757	1	25.757	25.257	26.257	0								0	0	0	0.17378	1	9181	9181		54.776	15.97	1				2807	2518	1755	1765	2827	2827					0.05513794997000332
ASAFAGRR	8	Unmodified	_ASAFAGRR_					0	0	0		ENST00000360240.10_1_3:48130367-48130646:-|nuORF	ENST00000360240.10_1_3:48130367-48130646:-|nuORF	ENST00000360240.10_1_3:48130367-48130646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.2295837402344	2	418.230294	834.446034	-0.29128	-0.00012182	-1.4904	-0.00062333	-1.7817	-0.00074515	418.22959753245186	15.468	0.19951	15.468	15.414	15.613	0					6	4	2	0	0	0	0.76283	1	4116	4116		25.45	2.4077	1	93819			2808	8860	1756	1766	2828	2828					0.022188979888483118
ASAFCGPI	8	Unmodified	_ASAFCGPI_					0	0	0			REV__nc|ENSG00000112357|O00628-2|PEX7	REV__nc|ENSG00000112357|O00628-2|PEX7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.18408203125	2	383.183632	764.352711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.959	1	24.959	24.459	25.459	0								0	0	0	1.7419	1	7864	7864		21.702	0	1		+		2809	14004	1757	1767	2829	2829					-0.03889162508596655
ASAFGGARTK	10	Unmodified	_ASAFGGARTK_					0	0	0			REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF	REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2615661621094	2	483.261791	964.509028	-0.59053	-0.00028538	0.27564	0.00013321	-0.31489	-0.00015217	483.26201914892056	14.115	0.15941	14.115	14.007	14.167	0					6	3	2	0	0	0	0.50639	1	3599	3599		40.058	1.252	1	249870	+		2810	15354	1758	1768	2830	2830					0.02535418986235527
ASAGGHNIIP	10	Unmodified	_ASAGGHNIIP_					0	0	0			REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.748291015625	2	468.748516	935.482479	-0.63581	-0.00029803	-0.4508	-0.00021131	-1.0866	-0.00050934	468.74847559454315	27.764	0.47081	27.764	27.572	28.043	0					27	11	4	0	0	0	0.32758	1	9756	9756		64.207	7.4862	1	377620	+		2811	12115	1759	1769	2831	2831					0.012157300949070304
ASAGPPSLRK	10	Unmodified	_ASAGPPSLRK_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.28448486328125	2	492.285266	982.555979	-0.073571	-3.6218E-05	-0.048659	-2.3954E-05	-0.12223	-6.0172E-05	492.28501272141835	18.5	0.11047	18.5	18.392	18.503	0					7	4	2	0	0	0	0.48255	1	4607	4607		28.081	0.19925	1	52086			2812	4735	1760	1770	2832	2832					0.06400278537375925
ASAGPPSLRK	10	Unmodified	_ASAGPPSLRK_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2855224609375	2	492.285266	982.555979	-0.55044	-0.00027097	0.61474	0.00030263	0.064297	3.1653E-05	492.28550831850896	18.798	0.27695	18.798	18.588	18.865	0					14	7	3	0	0	0	0.24594	1	5575	5575		53.089	15.277	1	312550			2813	4735	1760	1770	2833	2833					0.06400278537375925
ASAGVAVYR	9	Unmodified	_ASAGVAVYR_					0	0	0		PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;ENSG00000070159|ENST00000374541|PTPN3;nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2455139160156	2	447.245609	892.476666	0.60904	0.00027239	-1.6107	-0.00072037	-1.0017	-0.00044798	447.2452735516018	23.608	0.40515	23.608	23.526	23.932	0					14	9	2	0	0	0	0.048471	1	7854	7854		95.815	42.464	1	498180			2814	1445	1761	1771	2834	2834					0.02612631583235725
ASAGVAVYR	9	Unmodified	_ASAGVAVYR_					0	0	0		PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;ENSG00000070159|ENST00000374541|PTPN3;nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.2447814941406	2	447.245609	892.476666	-1.1715	-0.00052394	0.0064909	2.903E-06	-1.165	-0.00052104	447.2455964701385	23.344	0.15406	23.344	23.246	23.4	0					8	5	2	0	0	0	0.48389	1	7010	7010		34.173	5.023	1	56226			2815	1445	1761	1771	2835	2835					0.02612631583235725
ASAGVISKK	9	Unmodified	_ASAGVISKK_					0	0	0		ENSG00000162086|ENST00000669516|ZNF75A;nc|ENSG00000162086|Q96N20|ZNF75A	ENSG00000162086|ENST00000669516|ZNF75A	ENSG00000162086|ENST00000669516|ZNF75A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7626953125	2	430.763635	859.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.737	1	14.737	14.237	15.237	0								0	0	0	0.37786	1	3181	3181		17.468	0.10304	1				2816	5441	1762	1772	2836	2836					0.07734088760093982
ASAHKAPSHVL	11	Unmodified	_ASAHKAPSHVL_					0	0	0			REV__ENSG00000167077|ENST00000401548|MEI1	REV__ENSG00000167077|ENST00000401548|MEI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2096862792969	3	373.208607	1116.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.711	1	47.711	47.211	48.211	0								0	0	0	0.44646	1	18178	18178		29.551	5.0316	1		+		2817	16163	1763	1773	2837	2837					0.050353524574120456
ASAICFIAI	9	Unmodified	_ASAICFIAI_					0	0	0			REV__ENST00000559527.1_1_15:51023229-51039693:-|nuORF	REV__ENST00000559527.1_1_15:51023229-51039693:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.7491760253906	2	454.749139	907.483725	0.094236	4.2854E-05	-0.79154	-0.00035995	-0.69731	-0.0003171	454.7490554081465	24.13	0.38637	24.13	23.926	24.312	0					14	9	2	0	0	0	0.21116	1	7533	7533		60.294	14.342	1	131120	+		2818	14984	1764	1774	2838	2838					0.026282281394287565
ASAIPAYSK	9	Unmodified	_ASAIPAYSK_					0	0	0		SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.24774169921875	2	454.247818	906.481082	0.0054127	2.4587E-06	-0.50475	-0.00022928	-0.49933	-0.00022682	454.2475461288625	24.089	0.45193	24.089	23.807	24.259	0					30	15	3	0	0	0	0.25761	1	7073	7073		54.722	5.1863	1	367220			2819	1827	1765	1775	2839	2839					0.024100960061332444
ASAIPAYSK	9	Unmodified	_ASAIPAYSK_					0	0	0		SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2474670410156	2	454.247818	906.481082	0.29208	0.00013268	-1.1676	-0.00053037	-0.8755	-0.00039769	454.24725626843366	24.379	0.28977	24.379	24.188	24.478	0					9	6	2	0	0	0	0.44593	1	8167	8167		37.812	0	1	137680			2820	1827	1765	1775	2840	2840					0.024100960061332444
ASAIPAYSK	9	Unmodified	_ASAIPAYSK_					0	0	0		SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2481689453125	2	454.247818	906.481082	0.24451	0.00011107	-1.541	-0.0007	-1.2965	-0.00058893	454.2468042933541	24.147	0.60583	24.147	23.685	24.29	0					27	14	3	0	0	0	0.095583	1	7517	7517		80.455	10.827	1	391550			2821	1827	1765	1775	2841	2841					0.024100960061332444
ASAKEGTAFR	10	Unmodified	_ASAKEGTAFR_					0	0	0		nc|ENSG00000258992|Q01534-2|TSPY1;ENSG00000258992|ENST00000451548|TSPY1;ENSG00000236424|ENST00000428845|TSPY10;ENSG00000229549|ENST00000287721|TSPY8;ENSG00000228927|ENST00000457222|TSPY3;ENSG00000168757|ENST00000320701|TSPY2;ENSG00000238074|ENST00000440215|TSPY9;ENSG00000233803|ENST00000426950|TSPY4	nc|ENSG00000258992|Q01534-2|TSPY1	nc|ENSG00000258992|Q01534-2|TSPY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.51727294921875	3	346.517329	1036.53016	0.34263	0.00011873	-0.47598	-0.00016494	-0.13335	-4.6209E-05	346.51711164895914	17.458	0.30063	17.458	17.367	17.668	0					10	6	3	0	0	0	0.4758	1	5176	5176		47.96	3.5823	1	449980			2822	6117	1766	1776	2842	2842					0.01335384295066433
ASAKKKNKK	9	Unmodified	_ASAKKKNKK_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.88531494140625	3	334.885464	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.199	1	12.199	11.699	12.699	0								0	0	0	0.19749	1	2518	2518		67.494	5.8024	1				2823	1336	1767	1777	2843	2843					0.13381130842458333
ASAKSIDSK	9	Unmodified	_ASAKSIDSK_					0	0	0		CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant;ENST00000502249.6_1_4:119388789-119401509:+|nuORF;CEP170|p.N204Tfs*11|1|0.26|ENSG00000143702|chr1:243199080-243199080|T/-|frameshift_variant;CEP170|p.A226Qfs*31|1|0.08|ENSG00000143702|chr1:243191450-243191451|-/CATTG|frameshift_variant	CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.7296447753906	2	453.748182	905.481811	0.30265	0.00013733	-0.78897	-0.000358	-0.48632	-0.00022067	453.7477766036021	17.967	0.24794	17.967	17.866	18.114	0					12	5	3	0	0	0	0.098791	1	5157	5157		79.713	3.5429	1	2072500			2824	481	1768	1778	2844	2844					0.02528890655196392
ASALEAHQK	9	Unmodified	_ASALEAHQK_					0	0	0		ENSG00000182318|ENST00000329665|ZSCAN22	ENSG00000182318|ENST00000329665|ZSCAN22	ENSG00000182318|ENST00000329665|ZSCAN22	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7539367675781	2	477.753798	953.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.752	1	14.752	14.252	15.252	0								0	0	0	0.17378	1	3895	3895		54.776	5.3348	1				2825	6890	1769	1779	2845	2845					0.014437127493238222
ASALGSSSYK	10	Unmodified	_ASALGSSSYK_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7454833984375	2	485.745639	969.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.087	1	21.087	20.587	21.587	0								0	0	0	0.097225	1	5997	5997		80.455	10.827	1				2826	3294	1770	1780	2846	2846					-0.009234132074311674
ASALGSSSYK	10	Unmodified	_ASALGSSSYK_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.745361328125	2	485.745639	969.476725	0.65096	0.0003162	-0.87356	-0.00042433	-0.2226	-0.00010813	485.74517077459416	21.265	0.2614	21.265	21.112	21.374	0					7	5	2	0	0	0	0.33468	1	7042	7042		63.426	7.9223	1	690480			2827	3294	1770	1780	2847	2847					-0.009234132074311674
ASALGSSSYKK	11	Unmodified	_ASALGSSSYKK_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.7941284179688	2	549.793121	1097.57169	1.2724	0.00069953	0.54293	0.0002985	1.8153	0.00099804	549.7936255282219	17.2	0.10405	17.2	17.134	17.238	0					8	3	3	0	0	0	0.11999	1	4048	4048		84.817	30.095	1	170070			2828	3294	1771	1781	2848	2848					0.02680520263766084
ASALGSSSYKK	11	Unmodified	_ASALGSSSYKK_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7940063476562	2	549.793121	1097.57169	0.53256	0.0002928	1.0347	0.00056887	1.5673	0.00086167	549.7936529781034	17.497	0.13141	17.497	17.448	17.579	0					10	3	4	0	0	0	0.17294	1	4953	4953		77.533	4.654	1	1396100			2829	3294	1771	1781	2849	2849					0.02680520263766084
ASALGSSSYKK	11	Unmodified	_ASALGSSSYKK_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7935791015625	2	549.793121	1097.57169	0.21908	0.00012045	0.90219	0.00049602	1.1213	0.00061647	549.793520273833	17.475	0.1562	17.475	17.377	17.534	0					7	3	3	0	0	0	0.33911	1	5205	5205		58.246	5.1573	1	1416900			2830	3294	1771	1781	2850	2850					0.02680520263766084
ASALKRRFE	9	Unmodified	_ASALKRRFE_					0	0	0			REV__ENST00000531428.1_1_11:17099378-17112888:-|nuORF	REV__ENST00000531428.1_1_11:17099378-17112888:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.2112121582031	3	359.876969	1076.60908	-0.91895	-0.00033071	1.565	0.00056321	0.64604	0.0002325	359.8776298981528	17.431	0.058395	17.431	17.39	17.448	0					4	2	2	0	0	0	0.56424	1	4366	4366		25.574	2.0514	1	56924	+		2831	20060	1772	1782	2851	2851					0.07383656320052978
ASALSTFSLQ	10	Unmodified	_ASALSTFSLQ_					0	0	0			REV__CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	REV__CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7699584960938	2	512.769114	1023.52368	0.94119	0.00048261	-0.11732	-6.0158E-05	0.82387	0.00042246	512.7689426788129	18.026	0.74226	18.026	17.924	18.667	0					40	19	5	0	0	0	0.47859	1	4784	4784		47.657	0	1	12453000	+		2832	12430	1773	1783	2852	2852					0.01285446343717922
ASANGAAIKK	10	Unmodified	_ASANGAAIKK_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.77197265625	2	465.771991	929.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.607	1	13.607	13.107	14.107	0								0	0	0	0.19216	1	2825	2825		65.157	20.78	1				2833	3608	1774	1784	2853	2853					0.06184589646022687
ASANLGGVPSK	11	Unmodified	_ASANLGGVPSK_					0	0	0		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7750244140625	2	500.774731	999.534909	0.40241	0.00020151	-0.27745	-0.00013894	0.12495	6.2572E-05	501.2757741082317	22.756	0.32187	22.756	22.657	22.979	0					16	10	2	0	0	0	0.12878	1	6479	6479		82.831	15.337	1	95295			2834	7623	1775	1785	2854	2854					0.03512268437862076
ASANLGGVPSK	11	Unmodified	_ASANLGGVPSK_					0	0	0		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7747802734375	2	500.774731	999.534909	0.66049	0.00033076	-0.78953	-0.00039538	-0.12904	-6.4618E-05	500.7743803435623	23.102	0.44785	23.102	22.969	23.417	0					26	10	3	0	0	0	0.060509	1	7569	7569		100.09	35.879	1	607770			2835	7623	1775	1785	2855	2855					0.03512268437862076
ASAPANVSK	9	Unmodified	_ASAPANVSK_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7298583984375	2	422.729792	843.445031	0.37403	0.00015812	-0.25017	-0.00010575	0.12387	5.2362E-05	422.72973239152856	15.338	0.18659	15.338	15.242	15.429	0					14	7	2	0	0	0	0.13109	1	3318	3318		72.243	6.7779	1	147400			2836	4005	1776	1786	2856	2856					0.017046388292897063
ASAPANVSK	9	Unmodified	_ASAPANVSK_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7300109863281	2	422.729792	843.445031	0.37065	0.00015669	-0.67954	-0.00028726	-0.30889	-0.00013058	422.72946376686536	15.638	0.25623	15.638	15.546	15.802	0					13	6	3	0	0	0	0.013298	1	4069	4069		133.99	35.411	1	1001500			2837	4005	1776	1786	2857	2857					0.017046388292897063
ASAPANVSK	9	Unmodified	_ASAPANVSK_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7295837402344	2	422.729792	843.445031	-0.21561	-9.1144E-05	0.14601	6.1721E-05	-0.069602	-2.9423E-05	422.72981872362897	15.592	0.36458	15.592	15.484	15.849	0					18	7	4	0	0	0	0.034688	1	4283	4283		104.42	16.247	1	1696000			2838	4005	1776	1786	2858	2858					0.017046388292897063
ASAPANVSK	9	Unmodified	_ASAPANVSK_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7295227050781	2	422.729792	843.445031	0.13395	5.6625E-05	0.41208	0.0001742	0.54603	0.00023082	422.72987928967245	15.362	0.18653	15.362	15.278	15.464	0					12	5	3	0	0	0	0.021015	1	3420	3420		120.31	27.163	1	208330			2839	4005	1776	1786	2859	2859					0.017046388292897063
ASAPASGTGL	10	Unmodified	_ASAPASGTGL_					0	0	0			REV__ENST00000259351.9_1_9:129677090-129724543:+|nuORF	REV__ENST00000259351.9_1_9:129677090-129724543:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.2137451171875	2	416.213975	830.413397	-1.4441	-0.00060107	1.2247	0.00050973	-0.21946	-9.1342E-05	416.2144203844771	25.922	0.48496	25.922	25.76	26.245	0					27	12	3	0	0	0	0.095632	1	8082	8082		96.19	11.03	1	289100	+		2840	18004	1777	1787	2860	2860					-0.008593539246589899
ASAPLGDVPQI	11	Unmodified	_ASAPLGDVPQI_					0	0	0			REV__LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|24|1|anti-sense	REV__LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|24|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	356.5290832519531	3	356.529235	1066.56587	0.30797	0.0001098	-0.70595	-0.00025169	-0.39797	-0.00014189	356.5290283786758	23.923	0.16604	23.923	23.813	23.979	0					6	3	2	0	0	0	0.80429	1	8317	8317		12.957	0	1	248660	+		2841	20852	1778	1788	2861	2861					0.03525421752101465
ASAPLHQNK	9	Unmodified	_ASAPLHQNK_					0	0	0		ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2619934082031	2	483.261791	964.509028	0.059132	2.8576E-05	-0.80996	-0.00039142	-0.75083	-0.00036285	483.2617298808343	13.853	0.099153	13.853	13.796	13.895	0					6	4	2	0	0	0	0.070005	1	2770	2770		71.877	7.6702	1	76114			2842	3306	1779	1789	2862	2862					0.02535418986235527
ASAPLHQNK	9	Unmodified	_ASAPLHQNK_					0	0	0		ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.26141357421875	2	483.261791	964.509028	-0.15128	-7.3106E-05	-0.27713	-0.00013393	-0.42841	-0.00020703	483.261550301736	14.18	0.16847	14.18	14.093	14.262	0					9	4	3	0	0	0	0.032383	1	3385	3385		90.37	26.163	1	551340			2843	3306	1779	1789	2863	2863					0.02535418986235527
ASAPLHQNK	9	Unmodified	_ASAPLHQNK_					0	0	0		ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.26226806640625	2	483.261791	964.509028	-2.9191	-0.0014107	3.0072	0.0014533	0.088093	4.2572E-05	483.2634596397359	13.915	0.06407	13.915	13.87	13.934	0					6	3	2	0	0	0	0.16806	1	2858	2858		49.442	13.823	1	56280			2844	3306	1779	1789	2864	2864					0.02535418986235527
ASAPLSAAPPL	11	Unmodified	_ASAPLSAAPPL_					0	0	0			REV__SAMD11|p.S218Qfs*4|1|0.46|ENSG00000187634|chr1:939401-939402|-/C|frameshift_variant	REV__SAMD11|p.S218Qfs*4|1|0.46|ENSG00000187634|chr1:939401-939402|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.77716064453125	2	497.782025	993.549496	-1.1208	-0.00055792	-2.0613	-0.0010261	-3.1821	-0.001584	497.7826527115806	29.515	0.35425	29.515	29.377	29.731	0					27	13	3	0	0	0	0.58789	1	9688	9688		37.812	0	1	344590	+		2845	17128	1780	1790	2865	2865					0.05246340585983944
ASAPPQEQK	9	Unmodified	_ASAPPQEQK_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2449951171875	2	478.245806	954.47706	-0.28426	-0.00013595	0.27647	0.00013222	-0.0077929	-3.7269E-06	478.24588077247165	13.667	1.252	13.667	13.482	14.734	0					53	32	3	0	0	0	0.3269	1	3116	3116		47.96	7.9014	1	531500			2846	1456	1781	1791	2866	2866					-0.0019999348756982727
ASAPPQEQK	9	Unmodified	_ASAPPQEQK_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.245361328125	2	478.245806	954.47706	0.65232	0.00031197	0.059187	2.8306E-05	0.7115	0.00034027	478.24521629217946	13.661	1.3887	13.661	13.505	14.893	0					61	29	3	0	0	0	0.12834	1	3336	3336		72.879	5.3856	1	581680			2847	1456	1781	1791	2867	2867					-0.0019999348756982727
ASAPSAACK	9	Unmodified	_ASAPSAACK_					0	0	0		ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.19720458984375	2	403.19727	804.379988	0.66228	0.00026703	-0.91654	-0.00036955	-0.25426	-0.00010252	403.19695239212814	15.717	0.096368	15.717	15.629	15.726	0					4	2	2	0	0	0	0.19605	1	4108	4108		62.107	12.083	1	90602			2848	4156	1782	1792	2868	2868					-0.030026789682324306
ASAPSVAGK	9	Unmodified	_ASAPSVAGK_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.21905517578125	2	394.21906	786.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.541	1	17.541	17.041	18.041	0								0	0	0	0.099216	1	4968	4968		71.877	15.156	1				2849	1605	1783	1793	2869	2869					0.02181253800574723
ASAPVTVKR	9	Unmodified	_ASAPVTVKR_					0	0	0		MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant;nc|ENSG00000174579|Q9HCI7-2|MSL2;MSL2|p.L557*|1|0.09|ENSG00000174579|chr3:136151211-136151211|A/-|frameshift_variant;ENSG00000174579|ENST00000309993|MSL2	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7822570800781	2	464.782359	927.550165	-0.68782	-0.00031968	-0.11042	-5.132E-05	-0.79823	-0.000371	464.78253044552616	17.694	0.16798	17.694	17.608	17.776	0					10	4	3	0	0	0	0.40353	1	5046	5046		41.427	0.85399	1	431000			2850	6500	1784	1794	2870	2870					0.08349180025697933
ASAPVTVKR	9	Unmodified	_ASAPVTVKR_					0	0	0		MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant;nc|ENSG00000174579|Q9HCI7-2|MSL2;MSL2|p.L557*|1|0.09|ENSG00000174579|chr3:136151211-136151211|A/-|frameshift_variant;ENSG00000174579|ENST00000309993|MSL2	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7817077636719	2	464.782359	927.550165	-0.77214	-0.00035888	0.08717	4.0515E-05	-0.68497	-0.00031836	464.78239428528826	17.416	0.083586	17.416	17.365	17.448	0					6	3	2	0	0	0	0.40353	1	4362	4362		41.427	12.257	1	241700			2851	6500	1784	1794	2871	2871					0.08349180025697933
ASAPVTVKR	9	Unmodified	_ASAPVTVKR_					0	0	0		MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant;nc|ENSG00000174579|Q9HCI7-2|MSL2;MSL2|p.L557*|1|0.09|ENSG00000174579|chr3:136151211-136151211|A/-|frameshift_variant;ENSG00000174579|ENST00000309993|MSL2	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.78228759765625	2	464.782359	927.550165	0.68453	0.00031816	-0.88863	-0.00041302	-0.20409	-9.4859E-05	464.7819382447863	17.642	0.21798	17.642	17.483	17.701	0					10	4	3	0	0	0	0.02953	1	5288	5288		109.48	54.702	1	1706900			2852	6500	1784	1794	2872	2872					0.08349180025697933
ASAPVTVKR	9	Unmodified	_ASAPVTVKR_					0	0	0		MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant;nc|ENSG00000174579|Q9HCI7-2|MSL2;MSL2|p.L557*|1|0.09|ENSG00000174579|chr3:136151211-136151211|A/-|frameshift_variant;ENSG00000174579|ENST00000309993|MSL2	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MSL2|p.K455Nfs*37|1|0.08|ENSG00000174579|chr3:136151516-136151516|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7820129394531	2	464.782359	927.550165	2.6082	0.0012123	-3.4312	-0.0015948	-0.82299	-0.00038251	464.7807817073423	17.606	0.21889	17.606	17.498	17.717	0					10	4	3	0	0	0	0.10506	1	5120	5120		78.264	26.928	1	1835200			2853	6500	1784	1794	2873	2873					0.08349180025697933
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7558898925781	2	466.756007	931.497461	0.40304	0.00018812	-0.68225	-0.00031845	-0.27921	-0.00013032	466.75551449855	21.349	0.39206	21.349	21.052	21.444	0					24	9	4	0	0	0	0.026945	1	6767	6767		120.27	24.457	1	572420			2854	4458	1785	1795	2874	2874					0.02897177172235388
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7562255859375	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.097	1	21.097	20.597	21.597	0								0	0	0	0.38093	1	6002	6002		36.318	7.1476	1				2855	4458	1785	1795	2875	2875					0.02897177172235388
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.75567626953125	2	466.756007	931.497461	-0.13355	-6.2335E-05	-0.41778	-0.000195	-0.55133	-0.00025734	466.7558625196343	21.184	0.41136	21.184	20.93	21.341	0					17	8	3	0	0	0	0.057264	1	6997	6997		106.88	27.168	1	295640			2856	4458	1785	1795	2876	2876					0.02897177172235388
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7554016113281	2	466.756007	931.497461	-0.18519	-8.644E-05	-0.65474	-0.0003056	-0.83993	-0.00039204	466.7556731730648	21.087	0.29235	21.087	20.893	21.185	0					10	7	2	0	0	0	0.27406	1	6059	6059		70.399	20.863	1	39097			2857	4458	1785	1795	2877	2877					0.02897177172235388
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7557678222656	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.135	1	21.135	20.635	21.635	0								0	0	0	0.26178	1	6072	6072		56.632	0.19845	1				2858	4458	1785	1795	2878	2878					0.02897177172235388
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7558288574219	2	466.756007	931.497461	-0.5023	-0.00023445	0.27696	0.00012927	-0.22534	-0.00010518	466.7561288576685	21.246	0.51063	21.246	20.844	21.355	0					24	10	3	0	0	0	0.14893	1	6853	6853		86.882	11.838	1	573700			2859	4458	1785	1795	2879	2879					0.02897177172235388
ASASKGLEK	9	Unmodified	_ASASKGLEK_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF;ENST00000487281.1_1_20:30155508-30157019:+|nuORF;ENST00000335574.9_2_20:30154038-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.7502136230469	2	445.750724	889.486896	-0.29593	-0.00013191	-0.88669	-0.00039524	-1.1826	-0.00052715	445.75032060480294	13.36	0.091217	13.36	13.324	13.415	0					9	5	2	0	0	0	0.070005	1	2616	2616		88.177	16.299	1	72732			2860	2106	1786	1796	2880	2880					0.03773194517805223
ASASKGLEK	9	Unmodified	_ASASKGLEK_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF;ENST00000487281.1_1_20:30155508-30157019:+|nuORF;ENST00000335574.9_2_20:30154038-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.75042724609375	2	445.750724	889.486896	-0.39883	-0.00017778	-0.19677	-8.771E-05	-0.5956	-0.00026549	445.7505860576305	13.661	0.24213	13.661	13.578	13.82	0					12	6	3	0	0	0	0.003936	1	3144	3144		163.15	44.408	1	1505000			2861	2106	1786	1796	2881	2881					0.03773194517805223
ASASKGLEK	9	Unmodified	_ASASKGLEK_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF;ENST00000487281.1_1_20:30155508-30157019:+|nuORF;ENST00000335574.9_2_20:30154038-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.7503662109375	2	445.750724	889.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.663	1	13.663	13.163	14.163	0								0	0	0	0.16453	1	3377	3377		56.434	6.8977	1				2862	2106	1786	1796	2882	2882					0.03773194517805223
ASASLFPLK	9	Unmodified	_ASASLFPLK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;ENST00000460842.5_1_13:45113009-45147408:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7766418457031	2	467.273835	932.533118	-0.50661	-0.00023673	3.7211	0.0017388	3.2145	0.0015021	467.2755543449091	39.829	0.24202	39.829	39.701	39.943	0					10	5	3	0	0	0	0.098791	1	15767	15767		79.713	7.8351	1	84482			2863	2190	1787	1797	2883	2883					0.06415259419884478
ASASRRRAVI	10	Unmodified	_ASASRRRAVI_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-2|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.829833984375	2	543.828163	1085.64177	1.9949	0.0010849	1.0119	0.00055032	3.0068	0.0016352	543.8287057563566	18.413	0.16672	18.413	18.305	18.471	0					6	3	2	0	0	0	0.56931	1	5520	5520		37.812	1.3648	1	534260	+		2864	14057	1788	1798	2884	2884					0.10237863442898743
ASASRVAGVT	10	Unmodified	_ASASRVAGVT_					0	0	0		ENST00000587681.5_1_19:10229095-10230535:-|nuORF	ENST00000587681.5_1_19:10229095-10230535:-|nuORF	ENST00000587681.5_1_19:10229095-10230535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.75579833984375	2	459.753798	917.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.776	1	32.776	32.276	33.276	0								0	0	0	0.34115	1	10616	10616		44.377	3.599	1				2865	10912	1789	1799	2885	2885					0.030997127493264998
ASASSKDT	8	Unmodified	_ASASSKDT_					0	0	0			REV__nc|ENSG00000142864|Q8NC51-4|SERBP1	REV__nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.68255615234375	2	383.682507	765.350462	0.44908	0.00017231	-0.37634	-0.0001444	0.072741	2.791E-05	383.68238939710386	12.879	0.18413	12.879	12.787	12.971	0					8	4	2	0	0	0	0.66372	1	3012	3012		38.806	0	1	1253800	+		2866	15161	1790	1800	2886	2886					-0.04159919712719784
ASASSLKKK	9	Unmodified	_ASASSLKKK_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.28167724609375	2	460.282192	918.549831	-0.68697	-0.0003162	-0.032526	-1.4971E-05	-0.7195	-0.00033117	460.28212471136004	12.081	0.087436	12.081	12.026	12.113	0					10	3	4	0	0	0	0.022525	1	2463	2463		117.81	35.061	1	742330			2867	1544	1791	1801	2887	2887					0.08729760305845957
ASASSLKKK	9	Unmodified	_ASASSLKKK_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2812194824219	2	460.282192	918.549831	-1.1365	-0.00052312	-0.20411	-9.395E-05	-1.3406	-0.00061707	460.2822065625084	11.86	0.036719	11.86	11.826	11.863	0					4	2	2	0	0	0	0.30841	1	2314	2314		49.536	5.1589	1	86038			2868	1544	1791	1801	2888	2888					0.08729760305845957
ASASSLKKK	9	Unmodified	_ASASSLKKK_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.28204345703125	2	460.282192	918.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.058	1	12.058	11.558	12.558	0								0	0	0	0.040385	1	2476	2476		90.601	8.3603	1				2869	1544	1791	1801	2889	2889					0.08729760305845957
ASASTFVLV	9	Unmodified	_ASASTFVLV_					0	0	0		ENST00000425191.6_1_16:8814630-8814729:+|nuORF	ENST00000425191.6_1_16:8814630-8814729:+|nuORF	ENST00000425191.6_1_16:8814630-8814729:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7505798339844	2	447.750193	893.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.367	1	29.367	28.867	29.867	0								0	0	0	0.28164	1	10480	10480		38.806	3.1879	1				2870	9429	1792	1802	2890	2890					0.03482980148896786
ASATAFFLK	9	Unmodified	_ASATAFFLK_					0	0	0		ENST00000225726.9_1_17:61843531-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.26611328125	2	478.26601	954.517468	0.42471	0.00020312	-1.1362	-0.00054342	-0.71151	-0.00034029	478.265404857381	41.168	0.18112	41.168	41.097	41.278	0					15	8	2	0	0	0	0.1424	1	15644	15644		69.628	19.603	1	215470			2871	8185	1793	1803	2891	2891					0.03838972902849491
ASATAFFLK	9	Unmodified	_ASATAFFLK_					0	0	0		ENST00000225726.9_1_17:61843531-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.26556396484375	2	478.26601	954.517468	-0.65175	-0.00031171	-0.031464	-1.5048E-05	-0.68322	-0.00032676	478.26605465867965	41.082	0.27071	41.082	40.985	41.256	0					9	6	2	0	0	0	0.032052	1	16326	16326		107.01	69.848	1	136680			2872	8185	1793	1803	2892	2892					0.03838972902849491
ASATAFFLK	9	Unmodified	_ASATAFFLK_					0	0	0		ENST00000225726.9_1_17:61843531-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	ENST00000225726.9_1_17:61843531-61850919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2657775878906	2	478.26601	954.517468	0.86283	0.00041266	-1.4483	-0.00069268	-0.58548	-0.00028002	478.26535279024034	41.106	0.35345	41.106	40.972	41.326	0					16	8	3	0	0	0	0.048471	1	16318	16318		95.815	32.509	1	380730			2873	8185	1793	1803	2893	2893					0.03838972902849491
ASATALVSR	9	Unmodified	_ASATALVSR_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2503967285156	2	438.250892	874.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.587	1	23.587	23.087	24.087	0								0	0	0	0.029433	1	6846	6846		96.034	18.716	1				2874	5993	1794	1804	2894	2894					0.04496614237655194
ASATALVSR	9	Unmodified	_ASATALVSR_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2509765625	2	438.250892	874.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.64	1	23.64	23.14	24.14	0								0	0	0	0.00033844	1	7248	7248		131.62	43.92	1				2875	5993	1794	1804	2895	2895					0.04496614237655194
ASATALVSR	9	Unmodified	_ASATALVSR_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2508850097656	2	438.250892	874.48723	-0.60959	-0.00026715	1.6324	0.00071542	1.0228	0.00044826	438.2519462613674	23.652	0.25322	23.652	23.558	23.811	0					12	6	3	0	0	0	0.10506	1	7260	7260		78.264	20.034	1	98837			2876	5993	1794	1804	2896	2896					0.04496614237655194
ASATALVSR	9	Unmodified	_ASATALVSR_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.25067138671875	2	438.250892	874.48723	-3.1052	-0.0013609	1.9679	0.00086245	-1.1373	-0.00049843	438.25173737808143	23.669	0.124	23.669	23.589	23.713	0					5	3	2	0	0	0	0.44593	1	7272	7272		37.812	4.9991	1	69179			2877	5993	1794	1804	2897	2897					0.04496614237655194
ASATALVSR	9	Unmodified	_ASATALVSR_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.25067138671875	2	438.250892	874.48723	-0.57495	-0.00025197	3.3917	0.0014864	2.8167	0.0012344	438.2525187218911	23.789	0.26478	23.789	23.732	23.996	0					9	5	2	0	0	0	0.017421	1	8127	8127		126.24	41.082	1	356420			2878	5993	1794	1804	2898	2898					0.04496614237655194
ASATALVSR	9	Unmodified	_ASATALVSR_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2506103515625	2	438.250892	874.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.845	1	23.845	23.345	24.345	0								0	0	0	0.00049573	1	8143	8143		138.06	44.867	1				2879	5993	1794	1804	2899	2899					0.04496614237655194
ASATSVATK	9	Unmodified	_ASATSVATK_					0	0	0		OAT|p.T33Qfs*28|1|0.19|ENSG00000065154|chr10:124412075-124412075|T/-|frameshift_variant;ENST00000476917.5_1_10:126095965-126100767:-|nuORF;ENSG00000065154|ENST00000368845|OAT	OAT|p.T33Qfs*28|1|0.19|ENSG00000065154|chr10:124412075-124412075|T/-|frameshift_variant	OAT|p.T33Qfs*28|1|0.19|ENSG00000065154|chr10:124412075-124412075|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.22955322265625	2	418.229625	834.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.575	1	15.575	15.075	16.075	0								0	0	0	0.30009	1	4051	4051		35.152	6.0025	1				2880	1365	1795	1805	2900	2900					0.020852191094263617
ASATTTRH	8	Unmodified	_ASATTTRH_					0	0	0			REV__ENST00000590628.1_1_19:28296677-28296926:+|nuORF	REV__ENST00000590628.1_1_19:28296677-28296926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7169189453125	2	422.717216	843.419879	-0.3433	-0.00014512	-0.5971	-0.0002524	-0.9404	-0.00039752	422.71705800365135	13.181	0.16374	13.181	13.111	13.275	0					6	3	2	0	0	0	0.70055	1	3002	3002		33.516	1.5607	1	192890	+		2881	20522	1796	1806	2901	2901					-0.008094159732877415
ASAVLHERYL	10	Unmodified	_ASAVLHERYL_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.88037109375	3	386.880379	1157.61931	0.13135	5.0816E-05	-0.26556	-0.00010274	-0.13421	-5.1925E-05	386.8802546985739	27.413	0.36339	27.413	27.254	27.617	0					18	7	4	0	0	0	0.54197	1	9939	9939		30.569	0	1	1158000			2882	4378	1797	1807	2902	2902					0.046802192546238075
ASAVTQVAK	9	Unmodified	_ASAVTQVAK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;SCFD1|p.V202Cfs*43|1|0.35|ENSG00000092108|chr14:30643389-30643390|-/T|frameshift_variant	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7537841796875	2	437.753267	873.491981	-0.93966	-0.00041134	1.1702	0.00051227	0.23057	0.00010093	437.75379554760826	18.44	0.11338	18.44	18.36	18.473	0					6	4	2	0	0	0	0.13726	1	4813	4813		70.816	6.6089	1	76290			2883	1866	1798	1808	2903	2903					0.05017498380414054
ASAVTQVAK	9	Unmodified	_ASAVTQVAK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;SCFD1|p.V202Cfs*43|1|0.35|ENSG00000092108|chr14:30643389-30643390|-/T|frameshift_variant	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7528381347656	2	437.753267	873.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.506	1	18.506	18.006	19.006	0								0	0	0	0.16453	1	4843	4843		56.434	1.6575	1				2884	1866	1798	1808	2904	2904					0.05017498380414054
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.75030517578125	2	469.750724	937.486896	0.012736	5.9826E-06	-2.2508	-0.0010573	-2.2381	-0.0010514	469.7503906601934	22.533	0.24294	22.533	22.396	22.638	0					11	7	2	0	0	0	0.035106	1	6404	6404		104.01	40.48	1	186660			2885	5499	1799	1809	2905	2905					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7508850097656	2	469.750724	937.486896	-0.43171	-0.0002028	-0.53094	-0.00024941	-0.96265	-0.00045221	469.750745691946	22.578	0.10016	22.578	22.494	22.594	0					5	3	2	0	0	0	0.13726	1	6400	6400		70.816	26.439	1	64554			2886	5499	1799	1809	2906	2906					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7506408691406	2	469.750724	937.486896	0.19374	9.1008E-05	-3.265	-0.0015337	-3.0712	-0.0014427	469.75043622397595	22.848	0.33681	22.848	22.726	23.063	0					21	8	4	0	0	0	0.0067848	1	7495	7495		150.36	34.868	1	1365400			2887	5499	1799	1809	2907	2907					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.75042724609375	2	469.750724	937.486896	-0.62521	-0.00029369	0.0023806	1.1183E-06	-0.62283	-0.00029257	469.7507371380043	22.882	0.21389	22.882	22.793	23.007	0					10	5	2	0	0	0	0.020674	1	7508	7508		120.87	22.239	1	468210			2888	5499	1799	1809	2908	2908					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7503662109375	2	469.750724	937.486896	-1.2279	-0.00057681	0.67229	0.00031581	-0.55561	-0.000261	469.751007624485	22.599	0.19384	22.599	22.505	22.699	0					15	6	3	0	0	0	0.02953	1	6669	6669		109.48	32.161	1	615410			2889	5499	1799	1809	2909	2909					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7503356933594	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.821	1	22.821	22.321	23.321	0								0	0	0	0.00020973	1	7779	7779		195.06	49.908	1				2890	5499	1799	1809	2910	2910					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7505187988281	2	469.750724	937.486896	-0.6439	-0.00030247	-1.2605	-0.00059213	-1.9044	-0.00089461	469.7508398981058	22.681	0.23375	22.681	22.517	22.75	0					13	5	3	0	0	0	0.00324	2	6796	6774;6796		167.23	63.172	1	275040			2891	5499	1799	1809	2911;2912	2912					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7503967285156	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.804	1	22.804	22.304	23.304	0								0	0	0	0.0011098	1	7639	7639		190.26	37.226	1				2892	5499	1799	1809	2913	2913					0.01565194517809232
ASCEEAVTLLK	11	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))EEAVTLLK_	ASC(1)EEAVTLLK		ASC(100)EEAVTLLK		0	1	0		ENST00000494295.1_1_X:134477218-134477365:-|nuORF	ENST00000494295.1_1_X:134477218-134477365:-|nuORF	ENST00000494295.1_1_X:134477218-134477365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	610.8132934570312	2	610.813196	1219.61184	1.4304	0.0008737	-1.5795	-0.0009648	-0.14915	-9.1105E-05	610.812432272454	35.373	0.32357	35.373	35.262	35.586	0					13	6	3	0	0	0	0.056425	1	13665	13665		102.06	18.415	1	209870			2893	10095	1800	1810	2914	2914	408				0.01081698872008019
ASCEVLTVK	9	Unmodified	_ASCEVLTVK_					0	0	0		PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant;ENSG00000111110|ENST00000228705|PPM1H	PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.25439453125	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.692	1	29.692	29.192	30.192	0								0	0	0	0.14961	1	10632	10632		59.931	12.273	1				2894	2651	1801	1811	2915	2915					0.018710054429107004
ASCGTRSAGR	10	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))GTRSAGR_	ASC(1)GTRSAGR		ASC(91)GTRSAGR		0	1	0		SEC61B|p.M55Cfs*22|1|0.43|ENSG00000106803|chr9:99227954-99227954|G/-|frameshift_variant;ENSG00000106803|ENST00000223641|SEC61B	SEC61B|p.M55Cfs*22|1|0.43|ENSG00000106803|chr9:99227954-99227954|G/-|frameshift_variant	SEC61B|p.M55Cfs*22|1|0.43|ENSG00000106803|chr9:99227954-99227954|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.745361328125	2	511.743439	1021.47233	3.1068	0.0015899	0.49145	0.0002515	3.5982	0.0018414	511.7438387405505	17.507	0.90169	17.507	17.353	18.254	0					41	18	4	0	0	0	0.12763	1	5073	5073		90.601	18.358	1	6254000			2895	2463	1802	1812	2916	2916	99				-0.037552009019805155
ASCLGRRR	8	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))LGRRR_	ASC(1)LGRRR		ASC(46)LGRRR		0	1	0			REV__ENST00000275605.7_1_7:56119039-56119264:-|nuORF	REV__ENST00000275605.7_1_7:56119039-56119264:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.8468017578125	3	325.847015	974.519216	0.28863	9.4051E-05	-0.90698	-0.00029554	-0.61834	-0.00020149	325.8466259744978	22.059	0.14815	22.059	21.979	22.127	0					9	4	3	0	0	0	0.61938	1	6185	6185		45.952	13.997	1	146880	+		2896	18120	1803	1813	2917	2917	640				0.03093703439822093
ASCLPSPLR	9	Unmodified	_ASCLPSPLR_					0	0	0		ENST00000338154.10_1_X:53965368-53965482:-|nuORF	ENST00000338154.10_1_X:53965368-53965482:-|nuORF	ENST00000338154.10_1_X:53965368-53965482:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2552490234375	2	472.25512	942.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.688	1	29.688	29.188	30.188	0								0	0	0	0.31838	1	9395	9395		31.53	1.0262	1				2897	8712	1804	1814	2918	2918					0.02213844882635385
ASCNQTLSK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))NQTLSK_	ASC(1)NQTLSK		ASC(110)NQTLSK		0	1	0		ENST00000477521.5_1_10:99516996-99519054:+|nuORF;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7421875	2	504.742573	1007.47059	0.6728	0.00033959	-1.1106	-0.00056055	-0.43776	-0.00022096	504.74216501940685	15.279	0.15894	15.279	15.204	15.363	0					12	5	3	0	0	0	0.024312	1	3293	3293		114.86	34.404	1	205510			2898	5121	1805	1815	2919	2919	209				-0.03284254710592904
ASCNQTLSK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))NQTLSK_	ASC(1)NQTLSK		ASC(190)NQTLSK		0	1	0		ENST00000477521.5_1_10:99516996-99519054:+|nuORF;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.74261474609375	2	504.742573	1007.47059	0.78907	0.00039828	-1.1569	-0.00058395	-0.36785	-0.00018567	504.7421196199921	15.576	0.33695	15.576	15.533	15.87	0					17	8	4	0	0	0	0.00054273	1	4061	4061		187.5	61.261	1	3418900			2899	5121	1805	1815	2920	2920	209				-0.03284254710592904
ASCNQTLSK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))NQTLSK_	ASC(1)NQTLSK		ASC(150)NQTLSK		0	1	0		ENST00000477521.5_1_10:99516996-99519054:+|nuORF;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7425842285156	2	504.742573	1007.47059	-0.80517	-0.0004064	0.24477	0.00012355	-0.56039	-0.00028285	504.74290995494664	15.314	0.17015	15.314	15.233	15.403	0					11	5	3	0	0	0	0.0079272	1	3474	3474		145.46	46.879	1	489770			2900	5121	1805	1815	2921	2921	209				-0.03284254710592904
ASCNQTLSK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))NQTLSK_	ASC(1)NQTLSK		ASC(190)NQTLSK		0	1	0		ENST00000477521.5_1_10:99516996-99519054:+|nuORF;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7420959472656	2	504.742573	1007.47059	1.0436	0.00052674	-1.783	-0.00089997	-0.73945	-0.00037323	504.7418116052084	15.575	0.31905	15.575	15.467	15.786	0					19	6	5	0	0	0	0.00054273	1	4275	4275		187.5	61.261	1	3219800			2901	5121	1805	1815	2922	2922	209				-0.03284254710592904
ASCNQTLSK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))NQTLSK_	ASC(1)NQTLSK		ASC(170)NQTLSK		0	1	0		ENST00000477521.5_1_10:99516996-99519054:+|nuORF;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7427673339844	2	504.742573	1007.47059	0.11546	5.8276E-05	-0.17925	-9.0477E-05	-0.063798	-3.2202E-05	504.74263006684356	15.345	0.15411	15.345	15.265	15.419	0					9	4	3	0	0	0	0.0019365	1	3416	3416		174.86	59.97	1	332580			2902	5121	1805	1815	2923	2923	209				-0.03284254710592904
ASCNQTLSK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))NQTLSK_	ASC(1)NQTLSK		ASC(58)NQTLSK		0	1	0		ENST00000477521.5_1_10:99516996-99519054:+|nuORF;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7423095703125	2	504.742573	1007.47059	-2.004	-0.0010115	1.6501	0.00083289	-0.35387	-0.00017861	504.74353580329745	15.336	0.15501	15.336	15.255	15.41	0					6	4	2	0	0	0	0.22823	1	3427	3427		58.246	10.287	1	196620			2903	5121	1805	1815	2924	2924	209				-0.03284254710592904
ASCNQTLSK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))NQTLSK_	ASC(1)NQTLSK		ASC(230)NQTLSK		0	1	0		ENST00000477521.5_1_10:99516996-99519054:+|nuORF;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	ENST00000477521.5_1_10:99516996-99519054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7422790527344	2	504.742573	1007.47059	1.2168	0.00061415	-2.2266	-0.0011238	-1.0098	-0.00050969	504.7417228289231	15.537	0.40347	15.537	15.445	15.849	0					21	8	4	0	0	0	8.7857E-13	1	4128	4128		227.99	72.403	1	4380800			2904	5121	1805	1815	2925	2925	209				-0.03284254710592904
ASCQFRKEK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))QFRKEK_	ASC(1)QFRKEK		ASC(44)QFRKEK		0	1	0		ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5;ENST00000462410.5_1_1:211533229-211533703:+|nuORF	ENSG00000082512|ENST00000261464|TRAF5	ENSG00000082512|ENST00000261464|TRAF5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.1973876953125	3	385.197602	1152.57098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.041	1	14.041	13.541	14.541	0								0	0	0	0.24544	1	3403	3403		44.377	8.0595	1				2905	1678	1806	1816	2926	2926	69				0.0007940234306715865
ASCQYSLLK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))QYSLLK_	ASC(1)QYSLLK		ASC(200)QYSLLK		0	1	0		nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000197136|Q9H6A9-2|PCNX3;ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;ENST00000519530.1_1_1:233353734-233362997:-|nuORF	nc|ENSG00000135749|A6NKB5-5|PCNX2	nc|ENSG00000135749|A6NKB5-5|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2714233398438	2	535.270967	1068.52738	1.8061	0.00096674	-1.0049	-0.00053792	0.80114	0.00042882	535.2704775047869	31.479	0.24064	31.479	31.381	31.622	0					15	5	4	0	0	0	3.3778E-05	1	11865	11865		199.89	36.74	1	1389700			2906	4018	1807	1817	2927	2927	174				-0.004142071540627512
ASCQYSLLK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))QYSLLK_	ASC(1)QYSLLK		ASC(150)QYSLLK		0	1	0		nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000197136|Q9H6A9-2|PCNX3;ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;ENST00000519530.1_1_1:233353734-233362997:-|nuORF	nc|ENSG00000135749|A6NKB5-5|PCNX2	nc|ENSG00000135749|A6NKB5-5|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2713623046875	2	535.270967	1068.52738	1.8815	0.0010071	-1.3529	-0.00072415	0.52867	0.00028298	535.2704439502088	31.414	0.2655	31.414	31.305	31.571	0					14	5	4	0	0	0	0.0071744	1	11750	11750		148.69	22.448	1	862560			2907	4018	1807	1817	2928	2928	174				-0.004142071540627512
ASCQYSLLK	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))QYSLLK_	ASC(1)QYSLLK		ASC(120)QYSLLK		0	1	0		nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000197136|Q9H6A9-2|PCNX3;ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;ENST00000519530.1_1_1:233353734-233362997:-|nuORF	nc|ENSG00000135749|A6NKB5-5|PCNX2	nc|ENSG00000135749|A6NKB5-5|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.271240234375	2	535.270967	1068.52738	3.3669	0.0018022	-2.3793	-0.0012736	0.98764	0.00052866	535.2697043999856	31.445	0.31348	31.445	31.336	31.65	0					11	6	3	0	0	0	0.021015	1	11769	11769		120.31	16.292	1	1045700			2908	4018	1807	1817	2929	2929	174				-0.004142071540627512
ASCTVILKY	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))TVILKY_	ASC(1)TVILKY		ASC(48)TVILKY		0	1	0		ENST00000493307.1_1_7:150020428-150023055:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7837524414062	2	527.78371	1053.55287	0.55616	0.00029353	0.30362	0.00016024	0.85977	0.00045377	527.7836869945204	35.078	0.16897	35.078	34.984	35.153	0					12	7	2	0	0	0	0.33044	1	11476	11476		47.657	17.154	1	132860			2909	9758	1808	1818	2930	2930	402				0.028232673683532994
ASCTVILKY	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))TVILKY_	ASC(1)TVILKY		ASC(70)TVILKY		0	1	0		ENST00000493307.1_1_7:150020428-150023055:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7843627929688	2	527.78371	1053.55287	0.1065	5.6208E-05	0.46099	0.0002433	0.56748	0.00029951	527.7840984221643	35.353	0.19934	35.353	35.257	35.457	0					15	5	4	0	0	0	0.1424	1	13235	13235		69.628	14.851	1	802220			2910	9758	1808	1818	2931	2931	402				0.028232673683532994
ASCTVILKY	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))TVILKY_	ASC(1)TVILKY		ASC(70)TVILKY		0	1	0		ENST00000493307.1_1_7:150020428-150023055:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7843017578125	2	527.78371	1053.55287	0.52217	0.00027559	0.0032533	1.717E-06	0.52542	0.00027731	527.7836937512545	35.146	0.16196	35.146	35.077	35.239	0					10	7	2	0	0	0	0.1424	1	11874	11874		69.628	14.851	1	84547			2911	9758	1808	1818	2932	2932	402				0.028232673683532994
ASCTVILKY	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))TVILKY_	ASC(1)TVILKY		ASC(93)TVILKY		0	1	0		ENST00000493307.1_1_7:150020428-150023055:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7838745117188	2	527.78371	1053.55287	0.285	0.00015042	0.21438	0.00011315	0.49938	0.00026357	527.7838740287888	35.348	0.21877	35.348	35.271	35.49	0					15	6	3	0	0	0	0.056004	1	13682	13682		93.143	8.2277	1	536150			2912	9758	1808	1818	2933	2933	402				0.028232673683532994
ASCTVILKY	9	Carbamidomethyl (C)	_ASC(Carbamidomethyl (C))TVILKY_	ASC(1)TVILKY		ASC(80)TVILKY		0	1	0		ENST00000493307.1_1_7:150020428-150023055:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7850341796875	2	527.78371	1053.55287	-1.1919	-0.00062907	2.3078	0.001218	1.1159	0.00058897	527.7851203465616	35.135	0.14363	35.135	35.048	35.192	0					8	4	3	0	0	0	0.098791	1	12490	12490		79.713	24.208	1	100470			2913	9758	1808	1818	2934	2934	402				0.028232673683532994
ASCVCKGV	8	Unmodified	_ASCVCKGV_					0	0	0			REV__ENST00000585350.1_2_19:9785370-9785574:-|nuORF	REV__ENST00000585350.1_2_19:9785370-9785574:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.6824951171875	2	383.682942	765.35133	0.44909	0.00017231	-1.5043	-0.00057718	-1.0552	-0.00040487	383.68231213581737	11.981	0.069123	11.981	11.949	12.018	0					4	2	2	0	0	0	0.79882	1	2592	2592		19.36	1.0356	1	336860	+		2914	20472	1809	1819	2935	2935					-0.04073119869008224
ASDGVWNSI	9	Unmodified	_ASDGVWNSI_					0	0	0		ENST00000377902.5_1_9:36249201-36258352:-|nuORF	ENST00000377902.5_1_9:36249201-36258352:-|nuORF	ENST00000377902.5_1_9:36249201-36258352:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7243957519531	2	474.724707	947.43486	0.30261	0.00014365	-0.5816	-0.0002761	-0.27899	-0.00013244	474.72434234071346	29.562	0.3387	29.562	29.445	29.784	0					22	8	4	0	0	0	0.17854	1	10567	10567		64.207	5.9773	1	890570			2915	9058	1810	1820	2936	2936					-0.04095968895956048
ASDPHIIIK	9	Unmodified	_ASDPHIIIK_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	331.86224365234375	3	331.862437	992.565481	0.37206	0.00012347	-0.42413	-0.00014075	-0.052072	-1.7281E-05	331.8622099315978	24.312	0.15813	24.312	24.249	24.407	0					12	5	3	0	0	0	0.43426	1	7166	7166		54.776	16.965	1	129950			2916	3912	1811	1821	2937	2937					0.068900468229117
ASDPHIIIK	9	Unmodified	_ASDPHIIIK_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	331.8624572753906	3	331.862437	992.565481	0.64619	0.00021445	-0.75716	-0.00025127	-0.11097	-3.6827E-05	331.86215124180376	24.633	0.30328	24.633	24.533	24.836	0					20	7	4	0	0	0	0.51817	1	8306	8306		45.972	9.5255	1	1085300			2917	3912	1811	1821	2938	2938					0.068900468229117
ASDPHIIIK	9	Unmodified	_ASDPHIIIK_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.28997802734375	2	497.290017	992.565481	0.70789	0.00035203	-0.83518	-0.00041533	-0.12729	-6.3299E-05	497.2895347321164	24.66	0.30328	24.66	24.533	24.836	0					20	7	4	0	0	0	0.023928	1	8319	8319		115.49	25.124	1	1288000			2918	3912	1811	1821	2939	2939					0.068900468229117
ASDPHIIIK	9	Unmodified	_ASDPHIIIK_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2901306152344	2	497.290017	992.565481	0.78292	0.00038934	-0.63535	-0.00031595	0.14757	7.3387E-05	497.2897592111207	24.598	0.3155	24.598	24.447	24.762	0					14	6	4	0	0	0	0.11898	1	8641	8641		75.043	16.261	1	662450			2919	3912	1811	1821	2940	2940					0.068900468229117
ASDPHIIIK	9	Unmodified	_ASDPHIIIK_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2900695800781	2	497.290017	992.565481	0.16862	8.3852E-05	0.13969	6.9465E-05	0.3083	0.00015332	497.29007833245004	24.426	0.21681	24.426	24.301	24.518	0					12	5	3	0	0	0	0.13267	1	7608	7608		71.877	22.436	1	137830			2920	3912	1811	1821	2941	2941					0.068900468229117
ASDPHIIIK	9	Unmodified	_ASDPHIIIK_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.28997802734375	2	497.290017	992.565481	0.99844	0.00049651	-1.2322	-0.00061278	-0.23379	-0.00011626	497.28933804558244	24.574	0.30882	24.574	24.414	24.723	0					17	6	4	0	0	0	0.078509	1	8502	8502		85.161	33.825	1	1325900			2921	3912	1811	1821	2942	2942					0.068900468229117
ASDPNVSKKLK	11	Unmodified	_ASDPNVSKKLK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	593.8427734375	2	593.843145	1185.67174	0.12956	7.6936E-05	0.28221	0.00016759	0.41176	0.00024452	593.8432846251046	16.199	0.22566	16.199	16.094	16.32	0					22	10	3	0	0	0	0.10141	1	3636	3636		80.916	20.985	1	324550			2922	4965	1812	1822	2943	2943					0.08632757597570162
ASDPNVSKKLK	11	Unmodified	_ASDPNVSKKLK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.8438720703125	2	593.843145	1185.67174	0.28487	0.00016917	0.2957	0.0001756	0.58058	0.00034477	593.8432914186067	16.489	0.18421	16.489	16.392	16.576	0					16	4	5	0	0	0	6.6063E-05	1	4466	4466		136.52	45.914	1	2158400			2923	4965	1812	1822	2944	2944					0.08632757597570162
ASDPNVSKKLK	11	Unmodified	_ASDPNVSKKLK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.8425903320312	2	593.843145	1185.67174	0.18032	0.00010708	-0.24293	-0.00014426	-0.062604	-3.7177E-05	593.8430383230624	16.202	0.14516	16.202	16.118	16.263	0					12	5	3	0	0	0	0.43096	1	3825	3825		47.228	0	1	226540			2924	4965	1812	1822	2945	2945					0.08632757597570162
ASDPNVSKKLK	11	Unmodified	_ASDPNVSKKLK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.8438110351562	2	593.843145	1185.67174	0.01231	7.31E-06	0.91013	0.00054047	0.92244	0.00054778	593.8436499676875	16.405	0.21587	16.405	16.347	16.563	0					11	4	4	0	0	0	6.6063E-05	1	4692	4692		136.52	50.653	1	1645300			2925	4965	1812	1822	2946	2946					0.08632757597570162
ASDPSEKVKK	10	Unmodified	_ASDPSEKVKK_					0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.5364990234375	3	363.536389	1087.58734	0.73849	0.00026847	-0.80149	-0.00029137	-0.063003	-2.2904E-05	363.5362105774508	13.342	0.12458	13.342	13.265	13.389	0					5	3	2	0	0	0	0.58189	1	3031	3031		36.447	1.2947	1	50936			2926	3107	1813	1823	2947	2947					0.04704806780796389
ASEAIKGAVVG	11	Unmodified	_ASEAIKGAVVG_					0	0	0		ENST00000506477.5_1_5:137906647-137911007:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.28485107421875	2	501.284931	1000.55531	-0.045059	-2.2587E-05	0.13319	6.6764E-05	0.088127	4.4177E-05	501.2849026741987	24.984	0.31647	24.984	24.909	25.226	0					16	9	2	0	0	0	0.22894	1	7447	7447		70.816	6.6089	1	778520			2927	2775	1814	1824	2948	2948					0.05505439097657927
ASEAIKGAVVG	11	Unmodified	_ASEAIKGAVVG_					0	0	0		ENST00000506477.5_1_5:137906647-137911007:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2848205566406	2	501.284931	1000.55531	-0.11053	-5.5407E-05	-0.0025785	-1.2926E-06	-0.11311	-5.6699E-05	501.28486964748646	25.283	0.35963	25.283	25.181	25.541	0					23	8	4	0	0	0	0.07149	1	8607	8607		96.665	24.788	1	4151000			2928	2775	1814	1824	2949	2949					0.05505439097657927
ASEAIKGAVVG	11	Unmodified	_ASEAIKGAVVG_					0	0	0		ENST00000506477.5_1_5:137906647-137911007:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2853698730469	2	501.284931	1000.55531	-0.96467	-0.00048357	1.0179	0.00051023	0.053186	2.6662E-05	501.2853498738021	24.998	0.25912	24.998	24.937	25.196	0					22	8	4	0	0	0	0.32407	1	7713	7713		59.931	5.2084	1	562460			2929	2775	1814	1824	2950	2950					0.05505439097657927
ASEAIKGAVVG	11	Unmodified	_ASEAIKGAVVG_					0	0	0		ENST00000506477.5_1_5:137906647-137911007:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2848815917969	2	501.284931	1000.55531	0.14805	7.4213E-05	-0.041376	-2.0741E-05	0.10667	5.3472E-05	501.2847597556362	25.09	0.14355	25.09	24.999	25.142	0					6	3	2	0	0	0	0.29191	1	7917	7917		63.534	1.8426	1	197040			2930	2775	1814	1824	2951	2951					0.05505439097657927
ASEDAKSLKQL	11	Unmodified	_ASEDAKSLKQL_					0	0	0			REV__NPHP1|p.P186Tfs*2|1|0.33|ENSG00000144061|chr2:110168520-110168521|-/T|frameshift_variant	REV__NPHP1|p.P186Tfs*2|1|0.33|ENSG00000144061|chr2:110168520-110168521|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.21929931640625	3	397.218949	1188.63502	0.64605	0.00025662	0.75104	0.00029833	1.3971	0.00055495	397.21936264198655	16.81	0.15026	16.81	16.712	16.863	0					5	3	2	0	0	0	0.67983	1	4895	4895		29.551	0.38069	1	777060	+		2931	15222	1815	1825	2952	2952					0.048244609809898975
ASELFKGKK	9	Unmodified	_ASELFKGKK_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A;ENST00000487083.1_1_12:57423992-57424055:-|nuORF	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53485107421875	3	336.53432	1006.58113	0.24147	8.1262E-05	0.034585	1.1639E-05	0.27605	9.2901E-05	336.5343801398413	27.063	0.58963	27.063	26.708	27.298	0					35	21	2	0	0	0	0.61124	1	8296	8296		24.519	0	1	111590			2932	5939	1816	1826	2953	2953					0.07810333339944009
ASELMDRFH	9	Unmodified	_ASELMDRFH_					0	0	0			REV__ENSG00000187609|ENST00000340951|EXD3	REV__ENSG00000187609|ENST00000340951|EXD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.17449951171875	3	369.174686	1104.50223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.806	1	29.806	29.306	30.306	0								0	0	0	0.30504	1	9737	9737		34.173	2.6427	1		+		2933	17126	1817	1827	2954	2954					-0.04584261956665614
ASEPAQSDI	9	Unmodified	_ASEPAQSDI_					0	0	0			REV__ENST00000508761.1_1_5:11903293-11903473:-|nuORF	REV__ENST00000508761.1_1_5:11903293-11903473:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2122497558594	2	459.214172	916.413791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.311	1	29.311	28.811	29.811	0								0	0	0	0.19749	1	9843	9843		51.335	10.557	1		+		2934	19854	1818	1828	2955	2955					-0.04775978995473906
ASEPSVGVSG	10	Unmodified	_ASEPSVGVSG_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2166748046875	2	445.216714	888.418876	0.59603	0.00026536	-0.83332	-0.00037101	-0.2373	-0.00010565	445.21670121049783	32.13	0.53808	32.13	31.899	32.437	0					40	13	4	0	0	0	0.37692	1	11711	11711		58.782	7.4465	1	668140			2935	7755	1819	1829	2956	2956					-0.02979675132837656
ASEQLIQSIAK	11	Unmodified	_ASEQLIQSIAK_					0	0	0			REV__nc|ENSG00000148356|Q6UWE0-3|LRSAM1	REV__nc|ENSG00000148356|Q6UWE0-3|LRSAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.5590515136719	3	396.559194	1186.65575	0.096088	3.8105E-05	-0.082562	-3.2741E-05	0.013526	5.364E-06	396.55916583495383	22.477	0.1672	22.477	22.367	22.534	0					8	3	3	0	0	0	0.34891	1	7601	7601		57.149	6.3575	1	266620	+		2936	15382	1820	1830	2957	2957					0.06989051360665144
ASEQSALPL	9	Unmodified	_ASEQSALPL_					0	0	0			REV__TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant	REV__TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2425231933594	2	458.242732	914.470912	-0.43993	-0.00020159	-0.083495	-3.8261E-05	-0.52342	-0.00023985	458.24271394926154	29.162	0.46574	29.162	28.959	29.424	0					30	9	5	0	0	0	0.020824	1	10638	10638		120.62	5.7264	1	2499700	+		2937	14587	1821	1831	2958	2958					0.010254882809135779
ASEVLKHLK	9	Unmodified	_ASEVLKHLK_					0	0	0		ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000545218.5_1_12:121756099-121775126:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.8110961914062	2	512.811116	1023.60768	0.0096778	4.9629E-06	0.063973	3.2806E-05	0.07365	3.7769E-05	512.8111436923693	20.283	0.34218	20.283	20.18	20.522	0					12	7	3	0	0	0	0.032052	1	6275	6275		107.01	24.702	1	1752400			2938	1797	1822	1832	2959	2959					0.09682022231277188
ASEVLKHLK	9	Unmodified	_ASEVLKHLK_					0	0	0		ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000545218.5_1_12:121756099-121775126:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.8111572265625	2	512.811116	1023.60768	-0.46096	-0.00023638	0.49777	0.00025526	0.036812	1.8877E-05	512.8114216895556	20.204	0.167	20.204	20.096	20.263	0					7	3	3	0	0	0	0.063823	1	6522	6522		90.37	10.919	1	540180			2939	1797	1822	1832	2960	2960					0.09682022231277188
ASEVLKHLK	9	Unmodified	_ASEVLKHLK_					0	0	0		ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000545218.5_1_12:121756099-121775126:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.810791015625	2	512.811116	1023.60768	-1.688	-0.00086562	1.3913	0.00071347	-0.2967	-0.00015215	512.811896493779	20.048	0.13835	20.048	19.949	20.087	0					6	3	2	0	0	0	0.21263	1	5567	5567		60.118	2.307	1	155710			2940	1797	1822	1832	2961	2961					0.09682022231277188
ASEVLKHLK	9	Unmodified	_ASEVLKHLK_					0	0	0		ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000545218.5_1_12:121756099-121775126:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.81103515625	2	512.811116	1023.60768	3.1425	0.0016115	-3.5642	-0.0018278	-0.42171	-0.00021626	512.8094099146273	20.217	0.46402	20.217	20.111	20.575	0					12	9	2	0	0	0	0.012231	1	6397	6397		136.27	29.853	1	1414400			2941	1797	1822	1832	2962	2962					0.09682022231277188
ASFCGAVFR	9	Carbamidomethyl (C)	_ASFC(Carbamidomethyl (C))GAVFR_	ASFC(1)GAVFR		ASFC(42)GAVFR		0	1	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7445373535156	2	507.744919	1013.47529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.931	1	35.931	35.431	36.431	0								0	0	0	0.2591	1	13513	13513		42.396	10.441	1				2942	3426	1823	1833	2963	2963	139				-0.03091325777165821
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2977600097656	2	504.297842	1006.58113	0.64879	0.00032718	0.044165	2.2272E-05	0.69295	0.00034946	504.2979750972944	18.57	1.9968	18.57	18.473	20.47	0					169	62	5	0	0	0	0.0047071	5	4621	4621;4783;4940;5098;5261		159.28	45.864	1	122650000			2943	1161	1824	1834	2964;2965;2966;2967;2968	2964					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2980041503906	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.648	1	22.648	22.148	23.148	0								0	0	0	0.18645	1	6436	6436		52.937	1.6012	1				2944	1161	1824	1834	2969	2969					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342712402344	3	336.53432	1006.58113	0.24112	8.1145E-05	-0.66355	-0.00022331	-0.42243	-0.00014216	336.53439956648424	18.565	1.7487	18.565	18.465	20.214	0					145	54	5	0	0	0	0.25716	1	4616	4616		70.816	24.844	1	248330000			2945	1161	1824	1834	2970	2970					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.29766845703125	2	504.297842	1006.58113	-0.062767	-3.1653E-05	0.030085	1.5172E-05	-0.032682	-1.6482E-05	504.2977056440758	18.566	0.4421	18.566	18.465	18.907	0					29	14	4	0	0	0	0.0097668	1	4634	4634		141.52	39.92	1	2883800			2946	1161	1824	1834	2971	2971					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2977294921875	2	504.297842	1006.58113	0.77525	0.00039096	-0.17136	-8.6415E-05	0.6039	0.00030454	504.2979915256678	18.869	3.2491	18.869	18.683	21.932	0					248	75	5	0	0	0	0.0047071	7	5748	5577;5748;5917;6086;6285;6461;6629		159.28	45.185	1	528220000			2947	1161	1824	1834	2972;2973;2974;2975;2976;2977;2978	2973					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5343322753906	3	336.53432	1006.58113	0.51637	0.00017377	-1.1385	-0.00038316	-0.62218	-0.00020938	336.5344128448669	18.861	4.3428	18.861	18.75	23.093	0					349	101	5	0	0	0	0.35021	2	5569	5569;5740		61.691	23.88	1	882170000			2948	1161	1824	1834	2979;2980	2979					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.298095703125	2	504.297842	1006.58113	-0.056419	-2.8452E-05	-0.11073	-5.584E-05	-0.16715	-8.4292E-05	504.2977480766353	18.861	0.33433	18.861	18.789	19.124	0					19	9	3	0	0	0	0.012936	1	5597	5597		134.77	33.165	1	11500000			2949	1161	1824	1834	2981	2981					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2978820800781	2	504.297842	1006.58113	-0.82759	-0.00041735	1.234	0.00062232	0.40643	0.00020496	504.29869541347847	18.564	3.5432	18.564	18.441	21.984	0					271	112	5	0	0	0	0.012936	6	4846	4846;5013;5167;5378;5546;5861		134.77	44.396	1	147700000			2950	1161	1824	1834	2982;2983;2984;2985;2986;2987	2982					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53436279296875	3	336.53432	1006.58113	-0.67459	-0.00022702	0.60149	0.00020242	-0.073099	-2.46E-05	336.5345922141169	18.564	1.889	18.564	18.413	20.302	0					140	61	5	0	0	0	0.37197	1	4847	4847		60.118	15.741	1	65287000			2951	1161	1824	1834	2988	2988					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2994384765625	2	504.297842	1006.58113	1.032	0.00052045	-0.62387	-0.00031462	0.40816	0.00020583	504.29796942997166	18.8	3.774	18.8	18.544	22.318	0					215	76	5	0	0	0	0.0030642	4	5819	5819;6001;6172;6390		168.26	54.847	1	661630000			2952	1161	1824	1834	2989;2990;2991;2992	2989					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29736328125	2	504.297842	1006.58113	1.0291	0.000519	-1.6204	-0.00081719	-0.5913	-0.00029819	504.29718928302293	42.551	0.4957	42.551	42.343	42.839	0					33	24	2	0	0	0	0.38666	1	16684	16684		42.864	2.2917	1	62219			2953	1161	1824	1834	2993	2993					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.498	1	19.498	18.998	19.998	0								0	0	0	0.27025	1	6173	6173		56.434	15.656	1				2954	1161	1824	1834	2994	2994					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342102050781	3	336.53432	1006.58113	0.53459	0.00017991	-1.4096	-0.00047438	-0.87502	-0.00029448	336.53446196098747	18.81	2.0865	18.81	18.677	20.764	0					123	42	5	0	0	0	0.33044	1	5811	5811		63.534	29.361	1	149780000			2955	1161	1824	1834	2995	2995					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2981262207031	2	504.297842	1006.58113	-0.45759	-0.00023076	1.0922	0.00055079	0.6346	0.00032003	504.29861873719335	18.81	0.23958	18.81	18.677	18.917	0					8	5	2	0	0	0	0.028876	1	5850	5850		110.12	13.929	1	803020			2956	1161	1824	1834	2996	2996					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.785	1	40.785	40.285	41.285	0								0	0	0	0.36266	1	16071	16071		36.447	16.45	1				2957	1161	1824	1834	2997	2997					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2987060546875	2	504.297842	1006.58113	-0.016564	-8.3531E-06	-1.8307	-0.00092322	-1.8473	-0.00093157	504.2968681551988	18.635	0.24101	18.635	18.551	18.792	0					13	6	3	0	0	0	0.078509	1	4898	4898		85.161	0.2453	1	435130			2958	1161	1824	1834	2998	2998					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2979736328125	2	504.297842	1006.58113	0.11934	6.0182E-05	-0.61591	-0.0003106	-0.49657	-0.00025042	504.29768567812005	18.645	3.1466	18.645	18.539	21.685	0					180	74	4	0	0	0	0.0076184	6	4887	4887;5050;5214;5432;5597;6119		146.79	45.185	1	157190000			2959	1161	1824	1834	2999;3000;3001;3002;3003;3004	2999					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53436279296875	3	336.53432	1006.58113	-1.9131	-0.00064381	1.4318	0.00048184	-0.48129	-0.00016197	336.53487916533544	18.641	1.5857	18.641	18.501	20.087	0					104	38	5	0	0	0	0.24095	2	4879	4879;5206		72.879	40.067	1	134120000			2960	1161	1824	1834	3005;3006	3005					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53472900390625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.645	1	50.645	50.145	51.145	0								0	0	0	0.35899	1	16552	16552		30.318	13.845	1				2961	1161	1824	1834	3007	3007					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2978515625	2	504.297842	1006.58113	-0.37898	-0.00019112	-0.8627	-0.00043506	-1.2417	-0.00062618	504.297350520955	18.776	0.44268	18.776	18.669	19.112	0					22	9	4	0	0	0	5.4275E-05	1	5695	5695		195.05	81.634	1	7935300			2962	1161	1824	1834	3008	3008					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2984313964844	2	504.297842	1006.58113	1.2019	0.00060612	0.32767	0.00016524	1.5296	0.00077136	504.2983773412461	18.775	4.384	18.775	18.555	22.939	0					194	88	3	0	0	0	0.0030642	5	5704	5704;5894;6260;6478;6671		168.26	54.847	1	553040000			2963	1161	1824	1834	3009;3010;3011;3012;3013	3009					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5346374511719	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.762	1	18.762	18.262	19.262	0								0	0	0	0.23445	1	5677	5677		61.691	25.245	1				2964	1161	1824	1834	3014	3014					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.139	1	19.139	18.639	19.639	0								0	0	0	0.18645	1	5861	5861		68.846	34.925	1				2965	1161	1824	1834	3015	3015					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.491	1	19.491	18.991	19.991	0								0	0	0	0.24724	1	6034	6034		60.118	33.425	1				2966	1161	1824	1834	3016	3016					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.19	1	20.19	19.69	20.69	0								0	0	0	0.31838	1	6372	6372		46.457	20.883	1				2967	1161	1824	1834	3017	3017					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5340881347656	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.312	1	29.312	28.812	29.812	0								0	0	0	0.21054	1	10723	10723		65.465	19.493	1				2968	1161	1824	1834	3018	3018					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.934	1	36.934	36.434	37.434	0								0	0	0	0.3304	1	14396	14396		36.447	14.761	1				2969	1161	1824	1834	3019	3019					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.126	1	38.126	37.626	38.626	0								0	0	0	0.35899	1	14964	14964		30.318	12.953	1				2970	1161	1824	1834	3020	3020					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.264	1	48.264	47.764	48.764	0								0	0	0	0.3428	1	19194	19194		41.427	22.323	1				2971	1161	1824	1834	3021	3021					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5345458984375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.078	1	52.078	51.578	52.578	0								0	0	0	0.35899	1	20284	20284		30.318	12.953	1				2972	1161	1824	1834	3022	3022					0.07810333339944009
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.23272705078125	3	379.232641	1134.67609	0.019141	7.2587E-06	-0.18869	-7.1557E-05	-0.16955	-6.4298E-05	379.2326024086273	16.63	0.54396	16.63	16.565	17.109	0					35	20	4	0	0	0	0.30252	1	3813	3813		66.962	32.875	1	2469800			2973	1161	1825	1835	3023	3023					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.3463745117188	2	568.345323	1134.67609	1.1597	0.00065909	-0.77487	-0.0004404	0.3848	0.0002187	568.344860059011	16.63	0.39412	16.63	16.565	16.959	0					25	15	4	0	0	0	0.087581	1	3815	3815		85.862	6.1492	1	1920800			2974	1161	1825	1835	3024	3024					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.2325744628906	3	379.232641	1134.67609	0.19503	7.3963E-05	-0.25955	-9.843E-05	-0.064518	-2.4467E-05	379.23254538877165	16.937	1.6222	16.937	16.809	18.431	0					78	39	4	0	0	0	0.33468	1	4675	4675		63.426	15.467	1	22542000			2975	1161	1825	1835	3025	3025					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.3453979492188	2	568.345323	1134.67609	0.13736	7.8066E-05	0.32419	0.00018425	0.46154	0.00026232	568.3454449869266	16.937	0.73085	16.937	16.809	17.539	0					46	18	5	0	0	0	0.0063842	1	4676	4676		140.11	44.297	1	8370500			2976	1161	1825	1835	3026	3026					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.2324523925781	3	379.232641	1134.67609	-1.1129	-0.00042203	0.67589	0.00025632	-0.43697	-0.00016571	379.23285926578785	16.65	0.31303	16.65	16.588	16.901	0					35	13	4	0	0	0	0.30252	1	4030	4030		66.962	17.426	1	1637700			2977	1161	1825	1835	3027	3027					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.3458251953125	2	568.345323	1134.67609	0.11351	6.4511E-05	0.29006	0.00016485	0.40357	0.00022936	568.3454122212476	16.65	0.22021	16.65	16.588	16.808	0					28	9	4	0	0	0	0.019305	1	4031	4031		104.01	28.97	1	782180			2978	1161	1825	1835	3028	3028					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.3452758789062	2	568.345323	1134.67609	-0.2917	-0.00016579	0.37385	0.00021248	0.082145	4.6687E-05	568.3453356583002	16.646	0.14466	16.646	16.6	16.744	0					13	6	3	0	0	0	0.13022	1	4037	4037		68.846	15.909	1	278450			2979	1161	1825	1835	3029	3029					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.2322692871094	3	379.232641	1134.67609	-0.72952	-0.00027666	-0.016653	-6.3152E-06	-0.74617	-0.00028297	379.2326412736817	16.67	0.07909	16.67	16.62	16.699	0					5	3	2	0	0	0	0.64162	1	4048	4048		29.17	2.4771	1	101740			2980	1161	1825	1835	3030	3030					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.2326965332031	3	379.232641	1134.67609	0.54174	0.00020544	-0.8361	-0.00031708	-0.29437	-0.00011163	379.23245556031026	16.854	1.399	16.854	16.757	18.156	0					70	28	4	0	0	0	0.13663	1	4910	4910		89.029	38.995	1	23719000			2981	1161	1825	1835	3031	3031					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.3453979492188	2	568.345323	1134.67609	1.9579	0.0011128	-1.5044	-0.00085499	0.45358	0.00025779	568.344377165744	16.854	0.56114	16.854	16.757	17.318	0					31	11	5	0	0	0	0.0015876	1	4911	4911		143.37	63.923	1	8321900			2982	1161	1825	1835	3032	3032					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.3455810546875	2	568.345323	1134.67609	0.23877	0.0001357	0.22808	0.00012963	0.46684	0.00026533	568.3453523151659	16.886	0.36339	16.886	16.785	17.149	0					17	7	4	0	0	0	0.0088982	1	4902	4902		138.06	73.855	1	1418200			2983	1161	1825	1835	3033	3033					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.2325439453125	3	379.232641	1134.67609	0.45719	0.00017338	-0.76753	-0.00029107	-0.31034	-0.00011769	379.2323488813708	16.843	0.26153	16.843	16.785	17.047	0					10	5	3	0	0	0	0.4758	1	4905	4905		47.96	14.038	1	309840			2984	1161	1825	1835	3034	3034					0.11414266811129892
ASFENVRAK	9	Unmodified	_ASFENVRAK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.273681640625	2	511.274898	1020.53524	-0.12705	-6.4958E-05	-0.16856	-8.618E-05	-0.29561	-0.00015114	511.27472291755737	19.86	0.30924	19.86	19.759	20.069	0					26	9	5	0	0	0	0.026848	1	5205	5205		112.11	37.064	1	3691100			2985	4065	1826	1836	3035	3035					0.0257968815770937
ASFENVRAK	9	Unmodified	_ASFENVRAK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2740478515625	2	511.274898	1020.53524	-0.0020011	-1.0231E-06	-0.052293	-2.6736E-05	-0.054295	-2.7759E-05	511.27487078142127	20.188	0.6976	20.188	20.05	20.748	0					39	15	6	0	0	0	0.021015	1	6211	6211		120.31	34.444	1	14302000			2986	4065	1826	1836	3036	3036					0.0257968815770937
ASFENVRAK	9	Unmodified	_ASFENVRAK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.27471923828125	2	511.274898	1020.53524	-0.22803	-0.00011658	0.2464	0.00012598	0.018369	9.3915E-06	511.27516569688294	19.901	0.20235	19.901	19.829	20.031	0					14	6	3	0	0	0	0.054723	1	5461	5461		93.598	16.28	1	988850			2987	4065	1826	1836	3037	3037					0.0257968815770937
ASFENVRAK	9	Unmodified	_ASFENVRAK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2746887207031	2	511.274898	1020.53524	-0.43711	-0.00022348	0.138	7.0556E-05	-0.29911	-0.00015293	511.27502004334985	20.104	0.4171	20.104	19.995	20.412	0					22	8	5	0	0	0	0.011389	1	6450	6450		138.06	52.902	1	5932800			2988	4065	1826	1836	3038	3038					0.0257968815770937
ASFFLNLVQ	9	Unmodified	_ASFFLNLVQ_					0	0	0			REV__ENSG00000134538|ENST00000256958|SLCO1B1	REV__ENSG00000134538|ENST00000256958|SLCO1B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	346.85736083984375	3	346.858804	1037.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.858	1	20.858	20.358	21.358	0								0	0	0	0.3428	1	5944	5944		26.693	2.1737	1		+		2989	14751	1827	1837	3039	3039					0.037306444486148393
ASFGIRRE	8	Unmodified	_ASFGIRRE_					0	0	0		ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000465646.5_1_22:31904270-31924850:+|nuORF	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2545471191406	2	468.256508	934.498464	-1.0844	-0.00050779	-1.4616	-0.00068439	-2.546	-0.0011922	468.2557387550965	28.097	0.22586	28.097	28.014	28.24	0					12	8	2	0	0	0	0.71588	1	9067	9067		31.53	4.8369	1	212660			2990	7529	1828	1838	3040	3040					0.0285943633180068
ASFIFKTLK	9	Unmodified	_ASFIFKTLK_					0	0	0		ENST00000449503.6_1_3:57743439-57817152:+|nuORF	ENST00000449503.6_1_3:57743439-57817152:+|nuORF	ENST00000449503.6_1_3:57743439-57817152:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.2144775390625	3	352.214699	1053.62227	0.49391	0.00017396	-0.86673	-0.00030528	-0.37282	-0.00013131	352.214383534128	35.862	0.16263	35.862	35.779	35.942	0					9	4	3	0	0	0	0.61124	1	13487	13487		18.262	3.3972	1	155290			2991	9637	1829	1839	3041	3041					0.09760094379407747
ASFIFLPI	8	Unmodified	_ASFIFLPI_					0	0	0			REV__ENSG00000141698|ENST00000435506|NT5C3B	REV__ENSG00000141698|ENST00000435506|NT5C3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.26495361328125	2	454.268022	906.521491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.891	1	37.891	37.391	38.391	0								0	0	0	1.7419	1	14853	14853		37.028	8.7742	1		+		2992	15130	1830	1840	3042	3042					0.06449062396552563
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2586975097656	2	447.258185	892.501818	0.12244	5.4764E-05	0.28822	0.00012891	0.41066	0.00018367	447.2583150893712	33.977	0.3105	33.977	33.859	34.17	0					26	13	3	0	0	0	0.19952	1	11076	11076		61.691	3.4614	1	251740			2993	441	1831	1841	3043	3043					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2581481933594	2	447.258185	892.501818	0.61019	0.00027291	-0.94092	-0.00042083	-0.33073	-0.00014792	447.25774316602065	34.298	0.48105	34.298	34.143	34.624	0					26	12	4	0	0	0	0.019258	1	12738	12738		123.21	13.73	1	1388700			2994	441	1831	1841	3044	3044					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.25848388671875	2	447.258185	892.501818	-1.1724	-0.00052436	0.63913	0.00028586	-0.53326	-0.0002385	447.2584255437255	34.082	0.26583	34.082	33.963	34.229	0					25	11	3	0	0	0	0.035106	1	11454	11454		104.01	13.413	1	232290			2995	441	1831	1841	3045	3045					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.25762939453125	2	447.258185	892.501818	0.61077	0.00027317	-0.82813	-0.00037039	-0.21736	-9.7217E-05	447.2577928724079	34.266	0.40587	34.266	34.134	34.54	0					24	10	4	0	0	0	0.035106	1	13182	13182		104.01	5.4316	1	1575800			2996	441	1831	1841	3046	3046					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2584228515625	2	447.258185	892.501818	0.50145	0.00022428	-0.22654	-0.00010132	0.27491	0.00012295	447.25800308559315	34.022	0.1184	34.022	33.936	34.055	0					5	3	2	0	0	0	0.13726	1	12005	12005		70.816	12.586	1	57719			2997	441	1831	1841	3047	3047					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2581481933594	2	447.258185	892.501818	-0.39402	-0.00017623	-0.20855	-9.3277E-05	-0.60258	-0.00026951	447.2581345470324	34.031	0.24343	34.031	33.929	34.173	0					13	7	2	0	0	0	0.026848	1	11996	11996		112.11	5.4242	1	293070			2998	441	1831	1841	3048	3048					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.25787353515625	2	447.258185	892.501818	-2.6626	-0.0011909	1.805	0.00080732	-0.85752	-0.00038353	447.2587714484251	34.024	0.1765	34.024	33.918	34.095	0					8	5	2	0	0	0	0.30841	1	12011	12011		49.536	2.7696	1	45127			2999	441	1831	1841	3049	3049					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2580261230469	2	447.258185	892.501818	-0.4262	-0.00019062	-0.093733	-4.1923E-05	-0.51993	-0.00023255	447.2581292716479	34.253	0.45353	34.253	34.101	34.555	0					16	9	3	0	0	0	0.022525	1	13075	13075		117.81	5.4001	1	504010			3000	441	1831	1841	3050	3050					0.051266863858245415
ASFILGTGK	9	Unmodified	_ASFILGTGK_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;nc|ENSG00000184661|Q69YH5-2|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.25775146484375	2	447.258185	892.501818	0.84096	0.00037613	-2.2293	-0.00099708	-1.3884	-0.00062096	447.25745796555134	34.236	0.599	34.236	34.085	34.684	0					28	12	4	0	0	0	0.012936	1	13088	13088		134.77	5.3443	1	1497500			3001	441	1831	1841	3051	3051					0.051266863858245415
ASFKMDPLI	9	Unmodified	_ASFKMDPLI_					0	0	0		ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	341.1858215332031	3	341.184411	1020.5314	3.5151	0.0011993	0.050542	1.7244E-05	3.5656	0.0012165	341.1844271100559	19.882	0.24638	19.882	19.777	20.023	0					13	7	3	0	0	0	0.24095	1	5218	5218		56.721	16.663	1	397600			3002	1034	1832	1842	3052	3052					0.021958823396403204
ASFKMDPLI	9	Unmodified	_ASFKMDPLI_					0	0	0		ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	341.1855773925781	3	341.184411	1020.5314	3.6586	0.0012483	-0.023984	-8.1828E-06	3.6346	0.0012401	341.1843922854114	19.923	0.11523	19.923	19.849	19.964	0					8	3	3	0	0	0	0.48389	1	5473	5473		34.173	3.8548	1	313270			3003	1034	1832	1842	3053	3053					0.021958823396403204
ASFKMDPLI	9	Unmodified	_ASFKMDPLI_					0	0	0		ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2747497558594	2	511.272978	1020.5314	3.0872	0.0015784	0.53991	0.00027604	3.6271	0.0018544	511.27315096106895	20.12	0.61477	20.12	19.961	20.575	0					26	12	5	0	0	0	0.11898	1	6346	6346		58.782	0	1	22470000			3004	1034	1832	1842	3054	3054					0.021958823396403204
ASFKTVIKK	9	Unmodified	_ASFKTVIKK_					0	0	0		CCDC15|p.S196Ifs*6|2|0.29|ENSG00000149548|chr11:124975152-124975153|-/A|frameshift_variant;CCDC15|p.K194Rfs*29|2|0.35|ENSG00000149548|chr11:124975153-124975153|A/-|frameshift_variant;CCDC15|p.L510Cfs*138|1|0.15|ENSG00000149548|chr11:124987750-124987750|T/-|frameshift_variant;ENSG00000149548|ENST00000344762|CCDC15	CCDC15|p.S196Ifs*6|2|0.29|ENSG00000149548|chr11:124975152-124975153|-/A|frameshift_variant	CCDC15|p.S196Ifs*6|2|0.29|ENSG00000149548|chr11:124975152-124975153|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	341.2184143066406	3	341.218332	1020.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.641	1	19.641	19.141	20.141	0								0	0	0	0.25587	1	5356	5356		42.864	7.7122	1				3005	398	1833	1843	3055	3055					0.12367496753699925
ASFLLIASK	9	Unmodified	_ASFLLIASK_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.28839111328125	2	475.289485	948.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.883	1	42.883	42.383	43.383	0								0	0	0	0.11159	1	16814	16814		68.846	22.874	1				3006	766	1834	1844	3056	3056					0.08807832453999254
ASFLLIASK	9	Unmodified	_ASFLLIASK_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2889709472656	2	475.289485	948.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.88	1	42.88	42.38	43.38	0								0	0	0	0.029433	1	17138	17138		96.034	37.252	1				3007	766	1834	1844	3057	3057					0.08807832453999254
ASFLPPSSVKK	11	Unmodified	_ASFLPPSSVKK_					0	0	0		SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant;ENSG00000104549|ENST00000265896|SQLE	SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.83740234375	2	580.837331	1159.66011	-0.36031	-0.00020928	0.65482	0.00038035	0.29452	0.00017107	580.8377241764362	26.325	0.61	26.325	26.151	26.761	0					19	12	2	0	0	0	0.54277	1	9388	9388		31.634	2.4642	1	114490			3008	2294	1835	1845	3058	3058					0.0866656057421551
ASFLPPSSVKK	11	Unmodified	_ASFLPPSSVKK_					0	0	0		SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant;ENSG00000104549|ENST00000265896|SQLE	SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.560546875	3	387.560646	1159.66011	0.53333	0.0002067	-0.93085	-0.00036076	-0.39752	-0.00015406	387.5602304263923	26.306	1.3227	26.306	26.085	27.407	0					52	26	3	0	0	0	0.4771	1	9286	9286		45.908	4.828	1	362220			3009	2294	1835	1845	3059	3059					0.0866656057421551
ASFNAYENHLK	11	Unmodified	_ASFNAYENHLK_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.8787536621094	3	431.878926	1292.61495	-0.47608	-0.00020561	0.074797	3.2303E-05	-0.40128	-0.0001733	431.8789620746509	27.993	0.26743	27.993	27.91	28.177	0					13	5	4	0	0	0	0.52726	1	10087	10087		42.243	8.1561	1	262020			3010	6433	1837	1846	3060	3060					-0.019652899589800654
ASFNDTFVH	9	Unmodified	_ASFNDTFVH_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2383422851562	2	519.237981	1036.46141	1.4261	0.00074048	-0.3521	-0.00018282	1.074	0.00055766	519.2376306244117	35.075	0.11995	35.075	35.023	35.143	0					8	5	2	0	0	0	0.4966	1	11500	11500		32.812	1.2826	1	81770			3011	5707	1838	1847	3061	3061					-0.05536280004616856
ASFNDTFVH	9	Unmodified	_ASFNDTFVH_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.238525390625	2	519.237981	1036.46141	1.3833	0.00071828	-0.78584	-0.00040804	0.5975	0.00031024	519.2375175271434	35.386	0.27364	35.386	35.268	35.542	0					15	7	3	0	0	0	0.023928	1	13258	13258		115.49	65.958	1	391200			3012	5707	1838	1847	3062	3062					-0.05536280004616856
ASFNDTFVH	9	Unmodified	_ASFNDTFVH_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2383422851562	2	519.237981	1036.46141	0.17612	9.1449E-05	0.16698	8.6704E-05	0.3431	0.00017815	519.2378768545994	35.151	0.11786	35.151	35.099	35.217	0					9	5	2	0	0	0	0.42902	1	11889	11889		39.253	5.7372	1	65457			3013	5707	1838	1847	3063	3063					-0.05536280004616856
ASFNDTFVH	9	Unmodified	_ASFNDTFVH_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2380981445312	2	519.237981	1036.46141	1.6274	0.00084501	-1.0183	-0.00052872	0.60913	0.00031628	519.2372331057078	35.375	0.15157	35.375	35.281	35.433	0					11	4	3	0	0	0	0.078509	1	13701	13701		85.161	35.719	1	354290			3014	5707	1838	1847	3064	3064					-0.05536280004616856
ASFNDTFVH	9	Unmodified	_ASFNDTFVH_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2381591796875	2	519.237981	1036.46141	0.2898	0.00015048	0.1143	5.9348E-05	0.4041	0.00020982	519.2380871323896	35.288	0.37275	35.288	35.179	35.552	0					12	7	3	0	0	0	0.028876	1	13620	13620		110.12	45.913	1	475920			3015	5707	1838	1847	3065	3065					-0.05536280004616856
ASFPKVFIK	9	Unmodified	_ASFPKVFIK_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.2112121582031	3	346.211177	1035.6117	0.50251	0.00017397	-0.47216	-0.00016347	0.030347	1.0507E-05	346.2109963279655	35.188	0.35472	35.188	35.061	35.416	0					24	9	4	0	0	0	0.33044	1	13166	13166		63.534	43.537	1	712390			3016	2723	1839	1848	3066	3066					0.09532111724979586
ASFPKVFIK	9	Unmodified	_ASFPKVFIK_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.8134765625	2	518.813128	1035.6117	1.5929	0.0008264	-0.96704	-0.00050171	0.62582	0.00032468	518.8126103482529	35.119	0.26379	35.119	35.015	35.279	0					16	5	4	0	0	0	0.21263	1	13518	13518		60.118	28.163	1	698260			3017	2723	1839	1848	3067	3067					0.09532111724979586
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7479248046875	2	477.748182	953.481811	0.012871	6.1489E-06	-0.50892	-0.00024314	-0.49605	-0.00023699	477.7479292239076	21.101	0.25643	21.101	20.99	21.246	0					17	7	4	0	0	0	0.014648	1	5749	5749		131.12	27.059	1	1757700			3018	1248	1840	1849	3068	3068					0.0032089065520040094
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.7479248046875	2	477.748182	953.481811	-1.475	-0.00070469	0.79936	0.00038189	-0.67566	-0.0003228	477.7485843729639	21.128	0.25813	21.128	21.032	21.291	0					16	8	3	0	0	0	0.014648	1	6005	6005		131.12	48.875	1	1031700			3019	1248	1840	1849	3069	3069					0.0032089065520040094
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7481994628906	2	477.748182	953.481811	0.64672	0.00030897	-0.7223	-0.00034508	-0.075577	-3.6107E-05	477.7478283941735	21.316	0.26671	21.316	21.208	21.475	0					16	5	4	0	0	0	0.014648	1	7060	7060		131.12	56.861	1	6610400			3020	1248	1840	1849	3070	3070					0.0032089065520040094
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.74798583984375	2	477.748182	953.481811	-0.019376	-9.257E-06	-0.35582	-0.00016999	-0.3752	-0.00017925	477.7480105004043	21.177	0.2505	21.177	21.078	21.329	0					9	5	3	0	0	0	0.014648	1	6101	6101		131.12	61.488	1	596840			3021	1248	1840	1849	3071	3071					0.0032089065520040094
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7480163574219	2	477.748182	953.481811	-0.32991	-0.00015762	-0.099161	-4.7374E-05	-0.42908	-0.00020499	477.74814016997584	21.206	0.2495	21.206	21.108	21.357	0					11	5	3	0	0	0	0.014648	1	6093	6093		131.12	56.861	1	1135500			3022	1248	1840	1849	3072	3072					0.0032089065520040094
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.7477111816406	2	477.748182	953.481811	-0.64648	-0.00030885	0.10166	4.857E-05	-0.54482	-0.00026028	477.74820069453256	21.347	0.46302	21.347	21.19	21.653	0					20	9	4	0	0	0	0.014648	1	6920	6920		131.12	46.2	1	4844400			3023	1248	1840	1849	3073	3073					0.0032089065520040094
ASFRIAEV	8	Unmodified	_ASFRIAEV_					0	0	0			REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.7479553222656	2	446.747985	891.481417	-0.43731	-0.00019537	0.22251	9.9404E-05	-0.21481	-9.5964E-05	446.7480609372558	39.132	0.43084	39.132	38.886	39.317	0					16	9	2	0	0	0	0.69548	1	15408	15408		34.173	0	1	168740	+		3024	20906	1841	1850	3074	3074					0.03133515726005953
ASFSKRIQK	9	Unmodified	_ASFSKRIQK_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8148193359375	2	532.81419	1063.61383	0.40931	0.00021809	0.2631	0.00014018	0.67241	0.00035827	532.81449975392	16.862	0.11551	16.862	16.815	16.93	0					10	5	3	0	0	0	0.41113	1	3921	3921		40.778	0	1	131710			3025	5655	1842	1851	3075	3075					0.08456540462793782
ASFSKRIQK	9	Unmodified	_ASFSKRIQK_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.814453125	2	532.81419	1063.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.159	1	17.159	16.659	17.659	0								0	0	0	0.14211	1	5047	5047		61.691	21.119	1				3026	5655	1842	1851	3076	3076					0.08456540462793782
ASFSVVGMVK	10	Unmodified	_ASFSVVGMVK_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7779541015625	2	512.778428	1023.5423	0.0095094	4.8762E-06	-0.63674	-0.00032651	-0.62724	-0.00032163	512.778122188508	40.29	0.16249	40.29	40.219	40.381	0					19	7	3	0	0	0	0.030421	1	15362	15362		117.81	63.035	1	218500			3027	2578	1843	1852	3077	3077					0.0314728471394119
ASFTSAVIVGL	11	Unmodified	_ASFTSAVIVGL_					0	0	0			REV__ENST00000392250.6_1_19:32975010-32975169:+|nuORF	REV__ENST00000392250.6_1_19:32975010-32975169:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8040161132812	2	532.802957	1063.59136	1.758	0.00093669	-0.51452	-0.00027414	1.2435	0.00066256	532.8026291597612	40.009	0.32228	40.009	39.825	40.147	0					13	7	2	0	0	0	0.3865	1	15868	15868		52.937	5.0211	1	264080	+		3028	18820	1844	1853	3078	3078					0.062108962745242025
ASFVEKRLK	9	Unmodified	_ASFVEKRLK_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.88519287109375	3	359.885353	1076.63423	0.86267	0.00031046	-1.4284	-0.00051405	-0.5657	-0.00020359	359.88489274721036	25.083	0.1408	25.083	24.992	25.132	0					6	3	2	0	0	0	0.60749	1	8516	8516		20.947	0.10978	1	73660	+		3029	17542	1845	1854	3079	3079					0.09897711122584951
ASFVVFLIQ	9	Unmodified	_ASFVVFLIQ_					0	0	0		ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.73828125	2	512.29731	1022.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.568	1	18.568	18.068	19.068	0								0	0	0	0.3063	1	4871	4871		34.173	0.65696	1				3030	2	1846	1855	3080	3080					0.06968118971053627
ASFWPFGPV	9	Unmodified	_ASFWPFGPV_					0	0	0		ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2525634765625	2	504.252903	1006.49125	-2.0125	-0.0010148	1.4031	0.00070753	-0.60938	-0.00030728	504.253301483541	35.079	0.13993	35.079	35.014	35.153	0					10	4	3	0	0	0	0.57706	1	12474	12474		24.203	1.166	1	36184			3031	5438	1847	1856	3081	3081					-0.011732962686210158
ASGEGHHL	8	Unmodified	_ASGEGHHL_					0	0	0		PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant;nc|ENSG00000131771|Q9UD71-2|PPP1R1B;ENSG00000131771|ENST00000254079|PPP1R1B;ENST00000580772.1_1_17:37785452-37786437:+|nuORF	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	404.1906433105469	2	404.190834	806.367115	-2.2706	-0.00091775	2.117	0.00085567	-0.15359	-6.2081E-05	404.191520297904	14.309	0.066454	14.309	14.273	14.34	0					4	2	2	0	0	0	0.6282	1	3014	3014		44.531	0	1	113040			3032	3739	1848	1857	3082	3082					-0.04381374036097441
ASGEGHHLK	9	Unmodified	_ASGEGHHLK_					0	0	0		PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant;nc|ENSG00000131771|Q9UD71-2|PPP1R1B;ENSG00000131771|ENST00000254079|PPP1R1B;ENST00000580772.1_1_17:37785452-37786437:+|nuORF	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2382507324219	2	468.238316	934.462078	-1.0899	-0.00051033	1.8703	0.00087576	0.78044	0.00036543	468.23901618932376	12.043	0.083277	12.043	11.994	12.077	0					10	5	2	0	0	0	0.087861	1	2358	2358		82.241	2.7895	1	103000			3033	3739	1849	1858	3083	3083					-0.007774405649115579
ASGEGHHLK	9	Unmodified	_ASGEGHHLK_					0	0	0		PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant;nc|ENSG00000131771|Q9UD71-2|PPP1R1B;ENSG00000131771|ENST00000254079|PPP1R1B;ENST00000580772.1_1_17:37785452-37786437:+|nuORF	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2383117675781	2	468.238316	934.462078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.06	1	12.06	11.56	12.56	0								0	0	0	0.04624	1	2318	2318		87.696	13.722	1				3034	3739	1849	1858	3084	3084					-0.007774405649115579
ASGEGHHLK	9	Unmodified	_ASGEGHHLK_					0	0	0		PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant;nc|ENSG00000131771|Q9UD71-2|PPP1R1B;ENSG00000131771|ENST00000254079|PPP1R1B;ENST00000580772.1_1_17:37785452-37786437:+|nuORF	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.23822021484375	2	468.238316	934.462078	0.58283	0.0002729	-1.0579	-0.00049534	-0.47505	-0.00022244	468.2378420763893	12.271	0.40528	12.271	12.177	12.582	0					21	12	3	0	0	0	0.0071053	1	2568	2568		148.99	17.955	1	1026700			3035	3739	1849	1858	3085	3085					-0.007774405649115579
ASGFPGVGVF	10	Unmodified	_ASGFPGVGVF_					0	0	0			REV__ENSG00000272391|ENST00000615331|POM121C	REV__ENSG00000272391|ENST00000615331|POM121C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.24322509765625	2	469.242535	936.470518	-0.43307	-0.00020322	2.3995	0.0011259	1.9664	0.00092272	469.24375315029516	30.289	0.15985	30.289	30.217	30.377	0					8	5	2	0	0	0	0.47621	1	9640	9640		47.916	8.6628	1	96357	+		3036	17812	1850	1859	3086	3086					-0.0002588664827953835
ASGGAAYTK	9	Unmodified	_ASGGAAYTK_					0	0	0		THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant;ENSG00000054118|ENST00000354618|THRAP3	THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant	THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2094421386719	2	413.208692	824.402832	0.060502	2.5E-05	-0.3328	-0.00013752	-0.2723	-0.00011252	413.2085428844661	14.561	0.19971	14.561	14.463	14.663	0					7	4	2	0	0	0	0.037924	1	3793	3793		101.25	39.145	1	185040			3037	1265	1851	1860	3087	3087					-0.016393365790918324
ASGGAAYTK	9	Unmodified	_ASGGAAYTK_					0	0	0		THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant;ENSG00000054118|ENST00000354618|THRAP3	THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant	THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2086181640625	2	413.208692	824.402832	1.0506	0.00043413	-1.4952	-0.00061782	-0.44454	-0.00018369	413.2081101902642	14.544	0.14587	14.544	14.45	14.596	0					5	3	2	0	0	0	0.015496	1	3810	3810		129.42	57.544	1	795580			3038	1265	1851	1860	3088	3088					-0.016393365790918324
ASGGAKELK	9	Unmodified	_ASGGAKELK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000555062.1_1_14:102514125-102516009:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7452697753906	2	430.745442	859.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.4	1	13.4	12.9	13.9	0								0	0	0	0.0057146	1	3254	3254		154.12	43.998	1				3039	7426	1852	1861	3089	3089					0.040972118633817445
ASGGAKELK	9	Unmodified	_ASGGAKELK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000555062.1_1_14:102514125-102516009:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7454528808594	2	430.745442	859.476331	0.97035	0.00041798	-1.0509	-0.00045266	-0.080518	-3.4683E-05	430.74508804867753	13.34	0.14706	13.34	13.29	13.437	0					5	3	2	0	0	0	0.026538	1	3084	3084		112.41	24.657	1	215460			3040	7426	1852	1861	3090	3090					0.040972118633817445
ASGGAPSAPL	10	Unmodified	_ASGGAPSAPL_					0	0	0			REV__nc|ENSG00000165138|Q68DC2-4|ANKS6	REV__nc|ENSG00000165138|Q68DC2-4|ANKS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.2164611816406	2	414.216517	826.418482	-1.4615	-0.00060538	0.91413	0.00037865	-0.54737	-0.00022673	414.216976215346	28.199	0.12108	28.199	28.119	28.24	0					7	4	2	0	0	0	0.41335	1	9078	9078		54.776	1.4249	1	59181	+		3041	16024	1853	1862	3091	3091					-0.0016705006204347228
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.2687072753906	2	446.268553	890.522553	0.15608	6.9655E-05	0.27465	0.00012257	0.43074	0.00019222	446.26874364749983	38.651	0.14804	38.651	38.584	38.732	0					14	8	2	0	0	0	0.19605	1	12594	12594		62.107	19.711	1	70757			3042	1145	1854	1863	3092	3092					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2686462402344	2	446.268553	890.522553	0.60248	0.00026887	-1.0187	-0.00045462	-0.41623	-0.00018575	446.26808432478174	39.007	0.30145	39.007	38.897	39.199	0					22	11	3	0	0	0	0.032052	1	14819	14819		107.01	32.752	1	560540			3043	1145	1854	1863	3093	3093					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.26873779296875	2	446.268553	890.522553	-1.1676	-0.00052106	1.249	0.00055739	0.081403	3.6328E-05	446.2690774157012	38.756	0.13323	38.756	38.691	38.824	0					14	7	2	0	0	0	0.19605	1	13049	13049		62.107	7.3311	1	82914			3044	1145	1854	1863	3094	3094					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.2685241699219	2	446.268553	890.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.952	1	38.952	38.452	39.452	0								0	0	0	0.0017948	1	15301	15301		122.18	49.297	1				3045	1145	1854	1863	3095	3095					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.7698669433594	2	446.268553	890.522553	-0.44278	-0.0001976	0.79886	0.00035651	0.35609	0.00015891	446.268908277137	38.716	0.23481	38.716	38.622	38.857	0					18	12	2	0	0	0	0.087861	1	13832	13832		82.241	15.811	1	119810			3046	1145	1854	1863	3096	3096					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.268310546875	2	446.268553	890.522553	-2.7189	-0.0012133	2.4263	0.0010828	-0.2926	-0.00013058	446.26976004783404	38.715	0.12306	38.715	38.654	38.777	0					11	6	2	0	0	0	0.30951	1	13837	13837		49.442	7.0454	1	62176			3047	1145	1854	1863	3097	3097					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2687683105469	2	446.268553	890.522553	-0.44346	-0.0001979	0.18159	8.1039E-05	-0.26186	-0.00011686	446.26864873587783	38.898	0.30352	38.898	38.792	39.096	0					13	6	3	0	0	0	0.012915	1	15320	15320		134.81	47.056	1	362640			3048	1145	1854	1863	3098	3098					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.26837158203125	2	446.268553	890.522553	0.82098	0.00036638	-1.7732	-0.00079134	-0.95226	-0.00042496	446.26795473913165	38.929	0.49496	38.929	38.678	39.173	0					21	10	3	0	0	0	0.0073253	1	15331	15331		148.04	18.36	1	610650			3049	1145	1854	1863	3099	3099					0.07291276765465682
ASGGIFVLK	9	Unmodified	_ASGGIFVLK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2682189941406	2	446.268553	890.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.941	1	38.941	38.441	39.441	0								0	0	0	0.17378	1	15351	15351		54.776	7.119	1				3050	1145	1854	1863	3100	3100					0.07291276765465682
ASGGPGPLGP	10	Unmodified	_ASGGPGPLGP_					0	0	0		ENST00000263620.3_19:974543-975197:+|nuORF	ENST00000263620.3_19:974543-975197:+|nuORF	ENST00000263620.3_19:974543-975197:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.2113037109375	2	405.211235	808.407917	0.96788	0.0003922	-0.89665	-0.00036333	0.071227	2.8862E-05	405.2108375494328	18.725	0.17442	18.725	18.641	18.816	0					10	4	3	0	0	0	0.33577	1	5543	5543		63.306	3.188	1	379440			3051	8319	1855	1864	3101	3101					-0.003950327164716327
ASGGYIGGK	9	Unmodified	_ASGGYIGGK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.211181640625	2	405.211235	808.407917	0.043931	1.7801E-05	-0.12782	-5.1794E-05	-0.083889	-3.3993E-05	405.21120033418555	18.669	0.16727	18.669	18.561	18.728	0					5	3	2	0	0	0	0.19605	1	5781	5781		62.107	16.155	1	292430			3052	2047	1856	1865	3102	3102					-0.003950327164716327
ASGGYIGGK	9	Unmodified	_ASGGYIGGK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.2110290527344	2	405.211235	808.407917	-0.57381	-0.00023251	0.73852	0.00029926	0.16472	6.6744E-05	405.2115226846794	18.677	0.21176	18.677	18.572	18.784	0					9	4	3	0	0	0	0.21263	1	5647	5647		60.118	12.203	1	229890			3053	2047	1856	1865	3103	3103					-0.003950327164716327
ASGKAAENKL	10	Unmodified	_ASGKAAENKL_					0	0	0			REV__ENST00000597330.1_1_19:58556424-58557021:+|nuORF	REV__ENST00000597330.1_1_19:58556424-58557021:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7742004394531	2	494.774731	987.534909	-1.2612	-0.000624	1.797	0.00088913	0.53587	0.00026513	494.7756238340568	19.089	0.19518	19.089	19.026	19.221	0					12	6	3	0	0	0	0.36647	1	5102	5102		59.931	4.8469	1	263510	+		3054	20574	1857	1866	3104	3104					0.04064268437844021
ASGLGAPL	8	Unmodified	_ASGLGAPL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1978759765625	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.129	1	51.129	50.629	51.629	0								0	0	0	1.7419	1	20052	20052		25.45	0	1				3055	699	1858	1867	3105	3105					0.025824837431400738
ASGNRESVV	9	Unmodified	_ASGNRESVV_					0	0	0		ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7360534667969	2	459.735606	917.456658	0.88303	0.00040596	0.20137	9.2578E-05	1.0844	0.00049854	459.73568383399027	14.754	0.16555	14.754	14.694	14.86	0					5	3	2	0	0	0	0.2873	1	3753	3753		51.335	1.7994	1	626300			3056	3712	1859	1868	3106	3106					-0.0053716414737436935
ASGPAPGSSL	10	Unmodified	_ASGPAPGSSL_					0	0	0			REV__nc|ENSG00000130592|P33241-3|LSP1	REV__nc|ENSG00000130592|P33241-3|LSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2139587402344	2	422.213975	842.413397	-1.2032	-0.00050799	0.67941	0.00028686	-0.52375	-0.00022113	422.21427234176986	27.415	0.28958	27.415	27.272	27.561	0					14	10	2	0	0	0	0.24256	1	8724	8724		74.255	1.3758	1	199860	+		3057	21019	1860	1869	3107	3107					-0.01411353924663672
ASGPRPTYK	9	Unmodified	_ASGPRPTYK_					0	0	0		nc|ENSG00000117335|P15529-16|CD46;nc|ENSG00000117335|P15529-8|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-16|CD46	nc|ENSG00000117335|P15529-16|CD46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7639465332031	2	488.764166	975.513779	0.41712	0.00020387	-0.73308	-0.0003583	-0.31596	-0.00015443	488.7638448843892	16.43	0.22876	16.43	16.334	16.562	0					13	5	4	0	0	0	0.19952	1	4438	4438		61.691	0.71934	1	711330			3058	3031	1861	1870	3108	3108					0.025043031289897044
ASGPRPTYK	9	Unmodified	_ASGPRPTYK_					0	0	0		nc|ENSG00000117335|P15529-16|CD46;nc|ENSG00000117335|P15529-8|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-16|CD46	nc|ENSG00000117335|P15529-16|CD46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7640075683594	2	488.764166	975.513779	-0.07732	-3.7791E-05	-0.76207	-0.00037247	-0.83939	-0.00041026	488.76377397604693	16.388	0.21712	16.388	16.28	16.497	0					10	4	3	0	0	0	0.085655	1	4661	4661		82.75	27.974	1	1266100			3059	3031	1861	1870	3109	3109					0.025043031289897044
ASGRSHRE	8	Unmodified	_ASGRSHRE_					0	0	0		ENST00000357360.4_1_X:153707301-153707586:-|nuORF	ENST00000357360.4_1_X:153707301-153707586:-|nuORF	ENST00000357360.4_1_X:153707301-153707586:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2269287109375	2	450.225739	898.436926	2.5392	0.0011432	0.072256	3.2531E-05	2.6114	0.0011757	450.2257707345355	17.955	0.30815	17.955	17.851	18.159	0					17	6	4	0	0	0	0.28427	1	5289	5289		87.754	87.754	1	3722100			3060	8823	1862	1871	3110	3110					-0.016354953674863282
ASGSFKLNK	9	Unmodified	_ASGSFKLNK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.266357421875	2	476.266542	950.51853	-0.15604	-7.4318E-05	-0.50946	-0.00024264	-0.6655	-0.00031696	476.2663164018838	19.763	0.23952	19.763	19.662	19.901	0					18	7	4	0	0	0	0.032383	1	5165	5165		106.68	26.97	1	1156100			3061	7222;6080;3386;7010	1863	1872	3111	3111					0.04129187271757928
ASGSFKLNK	9	Unmodified	_ASGSFKLNK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.26629638671875	2	476.266542	950.51853	-0.38173	-0.00018181	-0.17136	-8.1612E-05	-0.55309	-0.00026342	476.2664284997566	20.104	0.60357	20.104	19.735	20.339	0					25	13	4	0	0	0	0.0023831	1	6188	6188		172.25	41.217	1	5634800			3062	7222;6080;3386;7010	1863	1872	3112	3112					0.04129187271757928
ASGSFKLNK	9	Unmodified	_ASGSFKLNK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2661437988281	2	476.266542	950.51853	-1.5281	-0.0007278	1.0056	0.00047894	-0.52252	-0.00024886	476.2669624086517	19.812	0.25145	19.812	19.731	19.983	0					17	8	3	0	0	0	0.0047071	1	5422	5422		159.28	52.268	1	839990			3063	7222;6080;3386;7010	1863	1872	3113	3113					0.04129187271757928
ASGSFKLNK	9	Unmodified	_ASGSFKLNK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2663269042969	2	476.266542	950.51853	-0.40927	-0.00019492	0.11171	5.3205E-05	-0.29756	-0.00014172	476.26645047051164	20.003	0.21813	20.003	19.894	20.112	0					7	4	2	0	0	0	0.070005	1	6427	6427		88.177	26.07	1	625610			3064	7222;6080;3386;7010	1863	1872	3114	3114					0.04129187271757928
ASGSHGRLPR	10	Unmodified	_ASGSHGRLPR_					0	0	0		ENST00000400454.5_1_21:41516612-41539212:-|nuORF	ENST00000400454.5_1_21:41516612-41539212:-|nuORF	ENST00000400454.5_1_21:41516612-41539212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.525634765625	3	346.524818	1036.55262	3.0304	0.0010501	-1.1504	-0.00039865	1.88	0.00065147	346.52452975079194	22.647	0.61851	22.647	22.304	22.922	0					23	11	3	0	0	0	0.60281	1	7583	7583		33.922	4.7516	1	3395100			3065	9247	1864	1873	3115	3115					0.0358102848335875
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2267150878906	2	450.227082	898.439611	0.031825	1.4329E-05	-0.72148	-0.00032483	-0.68965	-0.0003105	450.2267359276645	17.734	0.22476	17.734	17.627	17.852	0					15	6	3	0	0	0	0.12834	1	4295	4295		72.879	23.438	1	386870			3066	6476	1865	1874	3116	3116					-0.013670847531784602
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2267150878906	2	450.227082	898.439611	-0.30534	-0.00013747	-0.53179	-0.00023943	-0.83713	-0.0003769	450.22669207164563	17.716	0.15077	17.716	17.617	17.768	0					7	4	2	0	0	0	0.16806	1	4275	4275		65.465	6.6834	1	119430			3067	6476	1865	1874	3117	3117					-0.013670847531784602
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2268371582031	2	450.227082	898.439611	0.63364	0.00028528	-0.6181	-0.00027829	0.015543	6.998E-06	450.2266382366349	18	0.3243	18	17.896	18.221	0					20	7	4	0	0	0	0.032383	1	5214	5214		106.68	45.711	1	4013900			3068	6476	1865	1874	3118	3118					-0.013670847531784602
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2268371582031	2	450.227082	898.439611	-1.1856	-0.00053378	0.70629	0.00031799	-0.47928	-0.00021579	450.227304083457	17.735	0.22408	17.735	17.657	17.881	0					15	6	3	0	0	0	0.022525	1	4491	4491		117.81	41.037	1	906950			3069	6476	1865	1874	3119	3119					-0.013670847531784602
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.22686767578125	2	450.227082	898.439611	-0.19746	-8.8903E-05	-0.32461	-0.00014615	-0.52207	-0.00023505	450.22687393753847	17.786	0.23484	17.786	17.689	17.924	0					12	5	3	0	0	0	0.017421	1	4517	4517		126.24	38.488	1	798670			3070	6476	1865	1874	3120	3120					-0.013670847531784602
ASGTLDVPK	9	Unmodified	_ASGTLDVPK_					0	0	0		WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant;ENSG00000176473|ENST00000402312|WDR25	WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2452392578125	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.612	1	24.612	24.112	25.112	0								0	0	0	0.0537	1	7557	7557		85.161	25.043	1				3071	6609	1866	1875	3121	3121					0.02821792143527091
ASGTSLHQK	9	Unmodified	_ASGTSLHQK_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7455139160156	2	464.745973	927.477394	-0.68883	-0.00032013	-0.11947	-5.5524E-05	-0.80831	-0.00037566	464.746001097607	12.794	0.18149	12.794	12.746	12.928	0					8	5	3	0	0	0	0.0059092	1	2773	2773		154.12	47.435	1	353360			3072	5217	1867	1876	3122	3122					0.010754262322734576
ASGTSLHQK	9	Unmodified	_ASGTSLHQK_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2481689453125	2	464.745973	927.477394	-1.1594	-0.00053885	0.97457	0.00045293	-0.18487	-8.5917E-05	464.74581329250395	12.553	0.037859	12.553	12.526	12.564	0					4	2	2	0	0	0	0.27249	1	2494	2494		52.937	17.785	1	47412			3073	5217	1867	1876	3123	3123					0.010754262322734576
ASGTSLHQK	9	Unmodified	_ASGTSLHQK_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.74578857421875	2	464.745973	927.477394	-1.0907	-0.0005069	0.63595	0.00029556	-0.45474	-0.00021134	464.7462511755008	12.795	0.23271	12.795	12.738	12.971	0					11	5	3	0	0	0	0.0025054	1	2973	2973		171.53	45.718	1	900400			3074	5217	1867	1876	3124	3124					0.010754262322734576
ASGVFSKFR	9	Unmodified	_ASGVFSKFR_					0	0	0		nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-3|LIG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.5175476074219	3	333.518781	997.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.699	1	13.699	13.199	14.199	0								0	0	0	0.29774	1	3177	3177		35.152	0	1				3075	2363	1868	1877	3125	3125					0.03564893508666955
ASGVQRAP	8	Unmodified	_ASGVQRAP_					0	0	0		ENST00000404338.7_1_19:47505195-47505501:+|nuORF	ENST00000404338.7_1_19:47505195-47505501:+|nuORF	ENST00000404338.7_1_19:47505195-47505501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.21673583984375	2	393.216852	784.419151	0.12281	4.829E-05	-0.15581	-6.1267E-05	-0.033003	-1.2977E-05	393.2166480563398	18.669	0.38969	18.669	18.51	18.9	0					12	8	2	0	0	0	0.79567	1	5761	5761		17.365	0.89182	1	132220			3076	9269	1869	1878	3126	3126					0.01831789377649784
ASGWPWSQ	8	Unmodified	_ASGWPWSQ_					0	0	0		ENST00000436336.6_1_7:99054594-99054750:+|nuORF	ENST00000436336.6_1_7:99054594-99054750:+|nuORF	ENST00000436336.6_1_7:99054594-99054750:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7087707519531	2	459.70886	917.403166	-0.77642	-0.00035692	0.74727	0.00034352	-0.029149	-1.34E-05	459.709189357937	14.373	0.32876	14.373	14.301	14.63	0					13	7	3	0	0	0	0.72524	1	3713	3713		30.318	1.1682	1	1079200			3077	9530	1870	1879	3127	3127					-0.05883916859238525
ASHIASNPK	9	Unmodified	_ASHIASNPK_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.74853515625	2	462.748516	923.482479	0.072048	3.334E-05	0.016335	7.5588E-06	0.088383	4.0899E-05	462.7485248952519	13.645	0.1673	13.645	13.565	13.733	0					6	4	2	0	0	0	0.063171	1	3160	3160		90.601	16.626	1	217100			3078	909	1871	1880	3128	3128					0.01767730094900344
ASHIASNPK	9	Unmodified	_ASHIASNPK_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.74859619140625	2	462.748516	923.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.656	1	13.656	13.156	14.156	0								0	0	0	0.23445	1	3156	3156		45.972	7.1661	1				3079	909	1871	1880	3129	3129					0.01767730094900344
ASHIASNPK	9	Unmodified	_ASHIASNPK_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7482604980469	2	462.748516	923.482479	-0.14556	-6.7358E-05	-0.42456	-0.00019647	-0.57012	-0.00026382	462.74838277598866	13.617	0.16363	13.617	13.557	13.721	0					7	3	3	0	0	0	0.032383	1	3366	3366		106.68	45.711	1	329940			3080	909	1871	1880	3130	3130					0.01767730094900344
ASHIASNPK	9	Unmodified	_ASHIASNPK_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7488098144531	2	462.748516	923.482479	-0.47128	-0.00021808	0.54755	0.00025338	0.076268	3.5293E-05	462.7487489849519	13.581	0.20597	13.581	13.481	13.687	0					7	4	2	0	0	0	0.22837	1	3195	3195		58.23	25.418	1	264090			3081	909	1871	1880	3131	3131					0.01767730094900344
ASHIFLFH	8	Unmodified	_ASHIFLFH_					0	0	0			REV__ENSG00000187747|ENST00000345043|OR52B6	REV__ENSG00000187747|ENST00000345043|OR52B6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.25775146484375	2	486.25852	970.502486	-0.86035	-0.00041835	0.58776	0.0002858	-0.27259	-0.00013255	486.2587975479666	11.669	0.55325	11.669	11.597	12.151	0					54	31	3	0	0	0	0.77625	1	2348	2348		5.0869	0.40514	1	8560400	+		3082	17135	1872	1881	3132	3132					0.016055258255164517
ASHKPSEILE	10	Unmodified	_ASHKPSEILE_					0	0	0		USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant;USP38|p.L816Hfs*13|1|0.05|ENSG00000170185|chr4:143214419-143214420|-/ATCATATGAAA|frameshift_variant;nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	370.8649597167969	3	370.864506	1109.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.934	1	27.934	27.434	28.434	0								0	0	0	0.31444	1	8954	8954		48.602	6.2635	1				3083	6215	1873	1882	3133	3133					0.021285202637500333
ASHLDYLVL	9	Unmodified	_ASHLDYLVL_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7808227539062	2	515.782025	1029.5495	0.22666	0.00011691	-0.67305	-0.00034715	-0.44639	-0.00023024	515.7817581223308	35.992	0.40815	35.992	35.755	36.163	0					30	19	3	0	0	0	0.5654	1	11745	11745		25.45	0	1	335880			3084	251	1874	1883	3134	3134					0.03590340585992635
ASHLIRLSR	9	Unmodified	_ASHLIRLSR_					0	0	0			REV__ENSG00000082684|ENST00000357599|SEMA5B	REV__ENSG00000082684|ENST00000357599|SEMA5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.21331787109375	3	351.548964	1051.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.892	1	17.892	17.392	18.392	0								0	0	0	0.3693	1	5395	5395		19.997	0.89325	1		+		3085	13321	1875	1884	3135	3135					0.10131362556944623
ASHPIWRKS	9	Unmodified	_ASHPIWRKS_					0	0	0		ENST00000602384.5_3_1:19952901-19960990:+|nuORF	ENST00000602384.5_3_1:19952901-19960990:+|nuORF	ENST00000602384.5_3_1:19952901-19960990:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.2015380859375	3	361.201564	1080.58286	-0.07009	-2.5317E-05	0.038104	1.3763E-05	-0.031985	-1.1553E-05	361.2015286318538	32.227	0.52077	32.227	32.119	32.64	0					22	10	4	0	0	0	0.5879	1	12119	12119		23.523	23.523	1	525750			3086	11044	1876	1885	3136	3136					0.04579387148555725
ASHREMTSK	9	Unmodified	_ASHREMTSK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7568359375	2	523.756015	1045.49748	1.0243	0.00053651	-0.24081	-0.00012612	0.78354	0.00041038	523.75629477196	11.926	0.080876	11.926	11.868	11.949	0					6	2	3	0	0	0	0.013878	1	2560	2560		132.76	39.562	1	244190			3087	4928	1877	1886	3137	3137					-0.02345146099401063
ASHREMTSK	9	Unmodified	_ASHREMTSK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7565307617188	2	523.756015	1045.49748	0.48968	0.00025647	0.59217	0.00031015	1.0819	0.00056663	523.7563437750335	11.879	0.1375	11.879	11.813	11.951	0					7	4	2	0	0	0	0.090954	1	2395	2395		81.525	19.834	1	356380			3088	4928	1877	1886	3138	3138					-0.02345146099401063
ASHTGSSL	8	Unmodified	_ASHTGSSL_					0	0	0		nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.1850891113281	2	380.185217	758.355882	0.17179	6.5312E-05	-0.24012	-9.129E-05	-0.068328	-2.5977E-05	380.1851101309461	16.057	0.22846	16.057	15.966	16.194	0					8	5	2	0	0	0	0.27512	1	4287	4287		90.777	22.292	1	477390			3089	6054	1878	1887	3139	3139					-0.0329619613023624
ASHTGSSL	8	Unmodified	_ASHTGSSL_					0	0	0		nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.1851806640625	2	380.185217	758.355882	0.49688	0.00018891	-0.70503	-0.00026804	-0.20814	-7.9133E-05	380.18494146257007	16.022	0.36701	16.022	15.913	16.28	0					15	7	4	0	0	0	0.26534	1	4507	4507		94.006	5.3636	1	1153100			3090	6054	1878	1887	3140	3140					-0.0329619613023624
ASHTGSSL	8	Unmodified	_ASHTGSSL_					0	0	0		nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	380.1853942871094	2	380.185217	758.355882	-2.1447	-0.00081539	2.2379	0.00085081	0.093184	3.5427E-05	380.18594928124196	15.828	0.10278	15.828	15.766	15.869	0					7	4	2	0	0	0	0.30437	1	3616	3616		82.305	24.494	1	60889			3091	6054	1878	1887	3141	3141					-0.0329619613023624
ASHYIHIVK	9	Unmodified	_ASHYIHIVK_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.3041381835938	2	534.303458	1066.59236	0.15883	8.4862E-05	0.30105	0.00016085	0.45988	0.00024571	534.3035286583737	21.429	0.22063	21.429	21.298	21.518	0					12	5	3	0	0	0	0.055856	1	6819	6819		93.195	26.766	1	639110			3092	5335	1879	1888	3142	3142					0.061731554340894945
ASHYIHIVK	9	Unmodified	_ASHYIHIVK_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.5381774902344	3	356.538064	1066.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.446	1	21.446	20.946	21.946	0								0	0	0	0.15451	1	6816	6816		95.815	35.884	1				3093	5335	1879	1888	3143	3143					0.061731554340894945
ASHYIHIVK	9	Unmodified	_ASHYIHIVK_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.3046264648438	2	534.303458	1066.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.17	1	21.17	20.67	21.67	0								0	0	0	0.36266	1	6034	6034		21.96	2.5999	1				3094	5335	1879	1888	3144	3144					0.061731554340894945
ASHYIHIVK	9	Unmodified	_ASHYIHIVK_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.3048095703125	2	534.303458	1066.59236	0.29037	0.00015514	0.23845	0.0001274	0.52881	0.00028255	534.3034974602812	21.349	0.31793	21.349	21.24	21.558	0					12	6	3	0	0	0	0.023074	1	7058	7058		116.9	37.453	1	456480			3095	5335	1879	1888	3145	3145					0.061731554340894945
ASIAASAAFPL	11	Unmodified	_ASIAASAAFPL_					0	0	0			REV__ENST00000261483.4_1_5:109025110-109025431:+|nuORF	REV__ENST00000261483.4_1_5:109025110-109025431:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7820129394531	2	509.782025	1017.5495	0.94611	0.00048231	-0.68373	-0.00034855	0.26238	0.00013375	509.78177070835267	36.565	0.11238	36.565	36.496	36.608	0					5	3	2	0	0	0	0.65907	1	13811	13811		31.53	4.7337	1	75398	+		3096	18016	1880	1889	3146	3146					0.041423405859859486
ASIAGSSIINK	11	Unmodified	_ASIAGSSIINK_					0	0	0		ENST00000498255.6_1_13:42772627-42773776:+|nuORF;nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH	ENST00000498255.6_1_13:42772627-42773776:+|nuORF	ENST00000498255.6_1_13:42772627-42773776:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.8040771484375	2	530.803488	1059.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.186	1	29.186	28.686	29.686	0								0	0	0	0.1123	1	10396	10396		73.841	6.3475	1				3097	2189	1881	1890	3147	3147					0.0650111064342127
ASIDATYAK	9	Unmodified	_ASIDATYAK_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2430725097656	2	470.242732	938.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.456	1	23.456	22.956	23.956	0								0	0	0	0.27521	1	7050	7050		40.058	9.5545	1				3098	2715	1882	1891	3148	3148					-0.0007851171909578625
ASIDATYAK	9	Unmodified	_ASIDATYAK_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.24249267578125	2	470.242732	938.470912	-0.12535	-5.8944E-05	-0.14441	-6.7907E-05	-0.26976	-0.00012685	470.24230835099877	23.62	0.11693	23.62	23.562	23.679	0					4	2	2	0	0	0	0.04067	1	8176	8176		98.582	32.153	1	166220			3099	2715	1882	1891	3149	3149					-0.0007851171909578625
ASIDGCIKK	9	Unmodified	_ASIDGCIKK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7549133300781	2	467.754953	933.495352	-0.43551	-0.00020371	-0.059197	-2.769E-05	-0.49471	-0.0002314	467.7549514199847	21.3	0.18587	21.3	21.228	21.414	0					8	5	2	0	0	0	0.085655	1	5840	5840		82.75	29.399	1	99613			3100	5924	1883	1892	3150	3150					0.025944251627834092
ASIDGCIKK	9	Unmodified	_ASIDGCIKK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7546691894531	2	467.754953	933.495352	-0.64935	-0.00030374	-0.27238	-0.00012741	-0.92173	-0.00043114	467.7549533470001	21.648	0.31889	21.648	21.504	21.823	0					15	7	4	0	0	0	0.023928	1	6902	6902		115.49	27.74	1	787840			3101	5924	1883	1892	3151	3151					0.025944251627834092
ASIDGCIKK	9	Unmodified	_ASIDGCIKK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7547912597656	2	467.754953	933.495352	-1.0777	-0.00050409	0.96085	0.00044944	-0.11682	-5.4643E-05	467.75552378147586	21.323	0.1467	21.323	21.271	21.418	0					6	4	2	0	0	0	0.19605	1	6103	6103		62.107	8.756	1	124510			3102	5924	1883	1892	3152	3152					0.025944251627834092
ASIDGCIKK	9	Unmodified	_ASIDGCIKK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7548522949219	2	467.754953	933.495352	-1.0999	-0.00051447	0.72595	0.00033957	-0.37393	-0.00017491	467.75541089628064	21.548	0.31821	21.548	21.441	21.759	0					15	6	4	0	0	0	0.023928	1	7150	7150		115.49	16.119	1	687900			3103	5924	1883	1892	3153	3153					0.025944251627834092
ASIENLAQRT	10	Unmodified	_ASIENLAQRT_					0	0	0			REV__nc|ENSG00000103496|Q12846-2|STX4	REV__nc|ENSG00000103496|Q12846-2|STX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.2002868652344	3	368.199889	1101.57784	0.4804	0.00017688	-0.41181	-0.00015163	0.068597	2.5257E-05	368.19990167854905	27.078	0.12386	27.078	27.012	27.136	0					6	4	2	0	0	0	0.71484	1	8309	8309		14.086	0	1	60193	+		3104	20960	1884	1893	3154	3154					0.031110384952853565
ASIFRTPLQL	10	Unmodified	_ASIFRTPLQL_					0	0	0		GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant;nc|ENSG00000185340|Q99501|GAS2L1;ENSG00000185340|ENST00000616432|GAS2L1	GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant	GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.5618896484375	3	382.560758	1144.66044	0.10505	4.0188E-05	2.2924	0.00087696	2.3974	0.00091715	382.5617976484903	25.581	0.33994	25.581	25.404	25.744	0					19	8	4	0	0	0	0.26198	1	8763	8763		74.165	10.739	1	2556100			3105	7074	1885	1894	3155	3155					0.09389980294099587
ASIGSPKRK	9	Unmodified	_ASIGSPKRK_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.28759765625	2	472.287808	942.561064	0.21033	9.9335E-05	-0.87189	-0.00041178	-0.66156	-0.00031245	472.28736523975954	13.492	0.59062	13.492	13.006	13.596	0					21	16	2	0	0	0	0.12834	1	3061	3061		72.879	8.672	1	295240			3106	3290	1886	1895	3156	3156					0.0874858239999412
ASILSLVTK	9	Unmodified	_ASILSLVTK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2945556640625	2	466.294768	930.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.593	1	44.593	44.093	45.093	0								0	0	0	0.20989	1	17344	17344		49.536	8.7579	1				3107	4571	1887	1896	3157	3157					0.10691815108418723
ASILSLVTK	9	Unmodified	_ASILSLVTK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2945251464844	2	466.294768	930.574983	0.65355	0.00030475	-1.3399	-0.0006248	-0.68638	-0.00032006	466.29448396379166	44.532	0.16158	44.532	44.483	44.644	0					11	6	2	0	0	0	0.082776	1	17848	17848		83.647	30.71	1	99009			3108	4571	1887	1896	3158	3158					0.10691815108418723
ASILVVHTAP	10	Unmodified	_ASILVVHTAP_					0	0	0			REV__EIF4A3|p.Q213H|1|0.33|ENSG00000141543|chr17:80139110-80139110|C/A|missense_variant	REV__EIF4A3|p.Q213H|1|0.33|ENSG00000141543|chr17:80139110-80139110|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5340270996094	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.827	1	42.827	42.327	43.327	0								0	0	0	0.4201	1	16796	16796		15.333	0	1		+		3109	12785	1888	1897	3159	3159					0.07810333339944009
ASILYVASR	9	Unmodified	_ASILYVASR_					0	0	0			REV__ENST00000610170.1_1_22:34318437-34318572:+|nuORF	REV__ENST00000610170.1_1_22:34318437-34318572:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2819519042969	2	490.282192	978.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.147	1	38.147	37.647	38.647	0								0	0	0	0.28666	1	13648	13648		37.812	0.65241	1		+		3110	20637	1889	1898	3160	3160					0.05969760305856653
ASINLNAINK	10	Unmodified	_ASINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3038940429688	2	529.303655	1056.59276	1.1799	0.00062453	-0.22263	-0.00011784	0.95728	0.00050669	529.3035899658529	32.433	0.13551	32.433	32.345	32.481	0					8	5	2	0	0	0	0.23612	1	10479	10479		75.043	12.936	1	59383			3111	4912	1890	1899	3161	3161					0.0667253036326656
ASINLNAINK	10	Unmodified	_ASINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3035888671875	2	529.303655	1056.59276	2.2965	0.0012156	-2.1203	-0.0011223	0.17628	9.3305E-05	529.3019801638721	32.672	0.21487	32.672	32.583	32.798	0					14	5	4	0	0	0	0.0054485	1	12009	12009		164.46	35.034	1	618720			3112	4912	1890	1899	3162	3162					0.0667253036326656
ASINLNAINK	10	Unmodified	_ASINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3043823242188	2	529.303655	1056.59276	0.73316	0.00038806	0.47502	0.00025143	1.2082	0.00063949	529.303778856168	32.632	0.21458	32.632	32.523	32.737	0					9	4	3	0	0	0	0.11048	1	12310	12310		93.598	15.334	1	284750			3113	4912	1890	1899	3163	3163					0.0667253036326656
ASINLNAINK	10	Unmodified	_ASINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3043212890625	2	529.303655	1056.59276	1.6316	0.00086359	-0.98407	-0.00052087	0.64748	0.00034272	529.3029398207245	32.615	0.31727	32.615	32.506	32.823	0					19	6	4	0	0	0	0.0071914	1	12325	12325		157.34	22.579	1	905080			3114	4912	1890	1899	3164	3164					0.0667253036326656
ASINRIYGL	9	Unmodified	_ASINRIYGL_					0	0	0		PPP1CA|p.F136L|1|0.4|ENSG00000172531|chr11:67400699-67400699|G/T|missense_variant	PPP1CA|p.F136L|1|0.4|ENSG00000172531|chr11:67400699-67400699|G/T|missense_variant	PPP1CA|p.F136L|1|0.4|ENSG00000172531|chr11:67400699-67400699|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1943664550781	3	336.194186	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.462	1	21.462	20.962	21.962	0								0	0	0	0.36766	1	6166	6166		20.947	7.4929	1				3115	11955	1891	1900	3165	3165					0.05817162680148158
ASIPHVIAR	9	Unmodified	_ASIPHVIAR_					0	0	0		ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant;ENSG00000113812|ENST00000335754|ACTR8	ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant	ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	321.86279296875	3	321.86266	962.566149	-0.70271	-0.00022617	0.38536	0.00012403	-0.31734	-0.00010214	321.862706078503	25.571	0.17746	25.571	25.443	25.62	0					10	6	2	0	0	0	0.55379	1	7968	7968		26.693	8.3685	1	53885			3116	43	1892	1901	3166	3166					0.08336886262600274
ASIPHVIAR	9	Unmodified	_ASIPHVIAR_					0	0	0		ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant;ENSG00000113812|ENST00000335754|ACTR8	ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant	ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	321.86273193359375	3	321.86266	962.566149	0.55856	0.00017978	-0.33859	-0.00010898	0.21997	7.08E-05	321.8624533162656	25.858	0.39734	25.858	25.569	25.967	0					13	6	3	0	0	0	0.5741	1	9179	9179		24.519	5.4157	1	297020			3117	43	1892	1901	3167	3167					0.08336886262600274
ASIPKAIQ	8	Unmodified	_ASIPKAIQ_					0	0	0			REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.25299072265625	2	414.252903	826.491253	0.53515	0.00022169	-0.33864	-0.00014028	0.19651	8.1407E-05	414.25278901548535	28.186	0.8599	28.186	27.936	28.796	0					32	21	2	0	0	0	0.51384	1	9902	9902		58.782	4.0056	1	188880	+		3118	14482	1893	1902	3168	3168					0.07106703731381003
ASIPKAIQ	8	Unmodified	_ASIPKAIQ_					0	0	0			REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2527160644531	2	414.252903	826.491253	0.062853	2.6037E-05	-0.32413	-0.00013427	-0.26128	-0.00010823	414.2527486044407	28.336	1.0307	28.336	27.863	28.894	0					51	21	3	0	0	0	0.5535	1	10406	10406		54.776	3.4409	1	522790	+		3119	14482	1893	1902	3169	3169					0.07106703731381003
ASIQKLPA	8	Unmodified	_ASIQKLPA_					0	0	0		ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2525329589844	2	414.252903	826.491253	0.58708	0.0002432	-1.242	-0.0005145	-0.65492	-0.0002713	414.2524227807581	28.076	0.66866	28.076	27.683	28.351	0					37	22	2	0	0	0	0.67394	1	8757	8757		37.159	6.6555	1	87025			3120	3980	1894	1903	3170	3170					0.07106703731369635
ASIQLLASPK	10	Unmodified	_ASIQLLASPK_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.20965576171875	3	343.209725	1026.60735	0.6793	0.00023314	-0.84397	-0.00028966	-0.16467	-5.6516E-05	343.2094902424413	25.275	0.60163	25.275	24.786	25.388	0					42	14	4	0	0	0	0.71938	1	8571	8571		37.508	3.4217	1	759070	+		3121	17201	1895	1904	3171	3171					0.09510602511431898
ASIQPSKVGK	10	Unmodified	_ASIQPSKVGK_					0	0	0		nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.8004150390625	2	507.800749	1013.58694	-0.093333	-4.7395E-05	-0.18428	-9.3576E-05	-0.27761	-0.00014097	507.80053692198913	17.383	0.15298	17.383	17.289	17.442	0					8	5	2	0	0	0	0.11048	1	4128	4128		93.598	19.623	1	233870			3122	6039	1896	1905	3172	3172					0.0806943185162936
ASIQPSKVGK	10	Unmodified	_ASIQPSKVGK_					0	0	0		nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.8002624511719	2	507.800749	1013.58694	-0.5028	-0.00025532	0.16585	8.4218E-05	-0.33695	-0.0001711	507.80064092373715	17.419	0.14553	17.419	17.323	17.469	0					12	5	3	0	0	0	0.28036	1	4351	4351		69.628	2.134	1	145890			3123	6039	1896	1905	3173	3173					0.0806943185162936
ASIRLSSRKR	10	Unmodified	_ASIRLSSRKR_					0	0	0		ENST00000607241.1_1_2:9696514-9696625:+|nuORF	ENST00000607241.1_1_2:9696514-9696625:+|nuORF	ENST00000607241.1_1_2:9696514-9696625:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.9121398925781	3	391.910672	1172.71019	3.4892	0.0013675	-0.5987	-0.00023464	2.8905	0.0011328	391.910487993253	20.269	0.16578	20.269	20.221	20.386	0					13	5	3	0	0	0	0.62149	1	5626	5626		31.634	31.634	1	267230			3124	11093	1897	1906	3174	3174					0.13074108022738073
ASIRVREL	8	Unmodified	_ASIRVREL_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2872314453125	2	472.287808	942.561064	-0.64555	-0.00030489	0.57896	0.00027344	-0.066594	-3.1452E-05	472.2879339817275	53.864	0.29345	53.864	53.743	54.036	0					51	18	4	0	0	0	0.78978	1	19609	19609		21.96	3.6355	1	603360	+		3125	13173	1898	1907	3175	3175					0.08748582400005489
ASISGMEITK	10	Unmodified	_ASISGMEITK_					0	0	0		ENST00000547564.1_1_12:44196258-44199673:-|nuORF	ENST00000547564.1_1_12:44196258-44199673:-|nuORF	ENST00000547564.1_1_12:44196258-44199673:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7706298828125	2	518.7708	1035.52705	0.055313	2.8695E-05	1.2204	0.00063311	1.2757	0.00066181	518.7705522045957	31.165	0.26203	31.165	31.069	31.331	0					9	6	2	0	0	0	0.31894	1	11327	11327		65.157	17.5	1	230790			3126	10588	1899	1908	3176	3176					0.010703731260491622
ASISGMEITK	10	Unmodified	_ASISGMEITK_					0	0	0		ENST00000547564.1_1_12:44196258-44199673:-|nuORF	ENST00000547564.1_1_12:44196258-44199673:-|nuORF	ENST00000547564.1_1_12:44196258-44199673:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.771484375	2	518.7708	1035.52705	0.13992	7.2586E-05	1.8301	0.00094942	1.9701	0.001022	518.7716286999494	30.936	0.11876	30.936	30.87	30.988	0					6	4	2	0	0	0	0.536	1	10205	10205		41.427	0.64845	1	60272			3127	10588	1899	1908	3177	3177					0.010703731260491622
ASITKVPSK	9	Unmodified	_ASITKVPSK_					0	0	0			REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7843322753906	2	465.784567	929.554582	-0.43869	-0.00020434	-0.082886	-3.8607E-05	-0.52158	-0.00024294	465.78443521622546	16.379	0.1363	16.379	16.311	16.447	0					12	5	3	0	0	0	0.18416	1	3705	3705		63.534	0.22758	1	351200	+		3128	15025	1900	1909	3178	3178					0.08698644448611503
ASITPVKSK	9	Unmodified	_ASITPVKSK_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7843933105469	2	465.784567	929.554582	-0.67571	-0.00031473	0.004898	2.2814E-06	-0.67081	-0.00031245	465.78461008517786	16.657	0.25728	16.657	16.562	16.82	0					10	6	2	0	0	0	0.022525	1	4564	4564		117.81	13.797	1	2165400			3129	6086	1901	1910	3179	3179					0.08698644448611503
ASITPVKSK	9	Unmodified	_ASITPVKSK_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7843933105469	2	465.784567	929.554582	-1.163	-0.00054171	0.56053	0.00026109	-0.60248	-0.00028063	465.78482500169645	16.392	0.089722	16.392	16.34	16.43	0					8	3	3	0	0	0	0.048471	1	3912	3912		95.815	2.6719	1	549560			3130	6086	1901	1910	3180	3180					0.08698644448611503
ASIVDSLLIP	10	Unmodified	_ASIVDSLLIP_					0	0	0			REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2	REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.2075500488281	3	343.20598	1026.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.909	1	13.909	13.409	14.409	0								0	0	0	0.4201	1	3273	3273		23.523	3.5259	1		+		3131	14489	1902	1911	3181	3181					0.08387780417297108
ASKGVFEYM	9	Unmodified	_ASKGVFEYM_					0	0	0			REV__nc|ENSG00000036565|P54219-2|SLC18A1	REV__nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.5018310546875	3	344.500399	1030.47937	3.0275	0.001043	0.41405	0.00014264	3.4416	0.0011856	344.5006983442963	22.312	0.81522	22.312	22.207	23.022	0					51	16	5	0	0	0	0.43426	1	7412	7412		45.972	45.972	1	20427000	+		3132	12985	1903	1912	3182	3182					-0.03465281074136328
ASKIEALHK	9	Unmodified	_ASKIEALHK_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.8660583496094	3	332.86607	995.57638	0.37195	0.00012381	-0.50475	-0.00016801	-0.1328	-4.4204E-05	332.8658974792792	28.792	0.10056	28.792	28.731	28.832	0					5	3	2	0	0	0	0.59802	1	9019	9019		29.17	0	1	71105			3133	2145	1904	1913	3183	3183					0.07841449197178463
ASKIEALHK	9	Unmodified	_ASKIEALHK_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.8660583496094	3	332.86607	995.57638	0.38954	0.00012967	-0.35867	-0.00011939	0.030876	1.0278E-05	332.86595230539666	29.079	0.20315	29.079	28.976	29.179	0					5	4	2	0	0	0	0.59802	1	10718	10718		29.17	13.163	1	92235			3134	2145	1904	1913	3184	3184					0.07841449197178463
ASKIEALHK	9	Unmodified	_ASKIEALHK_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.8660583496094	3	332.86607	995.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.88	1	28.88	28.38	29.38	0								0	0	0	0.3693	1	9645	9645		27.047	4.4677	1				3135	2145	1904	1913	3185	3185					0.07841449197178463
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.53432	1006.58113	0.24139	8.1238E-05	-0.51028	-0.00017173	-0.26889	-9.049E-05	336.53411863153303	32.569	0.58083	32.569	32.227	32.807	0					29	24	2	0	0	0	0.60749	1	10507	10507		28.081	7.2443	1	96177	+		3136	21965	1905	1914	3186	3186					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5345764160156	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.665	1	39.665	39.165	40.165	0								0	0	0	0.38404	1	12867	12867		22.58	10.373	1		+		3137	21965	1905	1914	3187	3187					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5342712402344	3	336.53432	1006.58113	0.51637	0.00017377	-1.1385	-0.00038316	-0.62218	-0.00020938	336.5344128448669	18.861	4.3428	18.861	18.75	23.093	0					349	101	5	0	0	0	0.48389	1	6617	6617		41.427	6.2484	1	882170000	+		3138	21965	1905	1914	3188	3188					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5342712402344	3	336.53432	1006.58113	-0.67459	-0.00022702	0.60149	0.00020242	-0.073099	-2.46E-05	336.5345922141169	18.564	1.889	18.564	18.413	20.302	0					140	61	5	0	0	0	0.5879	2	5014	5014;5327		30.318	11.214	1	65287000	+		3139	21965	1905	1914	3189;3190	3189					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5344543457031	3	336.53432	1006.58113	-0.67476	-0.00022708	-0.27698	-9.3212E-05	-0.95174	-0.00032029	336.53447183699865	27.682	0.92159	27.682	27.131	28.052	0					49	32	3	0	0	0	0.59802	1	8788	8788		29.17	12.453	1	88735	+		3140	21965	1905	1914	3191	3191					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343933105469	3	336.53432	1006.58113	1.4876	0.00050062	-1.3915	-0.00046828	0.096077	3.2333E-05	336.5337967162917	25.098	6.4193	25.098	24.447	30.866	0					183	131	2	0	0	0	0.5879	2	10288	10288;10641		30.318	12.056	1	646530	+		3141	21965	1905	1914	3192;3193	3192					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5340576171875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.993	1	48.993	48.493	49.493	0								0	0	0	0.35899	1	18475	18475		30.318	11.214	1		+		3142	21965	1905	1914	3194	3194					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.743	1	21.743	21.243	22.243	0								0	0	0	0.35899	1	7125	7125		30.318	9.4806	1		+		3143	21965	1905	1914	3195	3195					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5340881347656	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.174	1	32.174	31.674	32.674	0								0	0	0	0.32356	1	12104	12104		37.812	16.126	1		+		3144	21965	1905	1914	3196	3196					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.883	1	38.883	38.383	39.383	0								0	0	0	0.28164	1	15323	15323		45.972	9.5255	1		+		3145	21965	1905	1914	3197	3197					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.018	1	40.018	39.518	40.518	0								0	0	0	0.35899	1	15858	15858		30.318	7.2752	1		+		3146	21965	1905	1914	3198	3198					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.557	1	42.557	42.057	43.057	0								0	0	0	0.3368	1	16991	16991		42.864	14.783	1		+		3147	21965	1905	1914	3199	3199					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.563	1	44.563	44.063	45.063	0								0	0	0	0.24724	1	17854	17854		51.193	17.271	1		+		3148	21965	1905	1914	3200	3200					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.127	1	53.127	52.627	53.627	0								0	0	0	0.37821	1	20515	20515		24.519	8.5124	1		+		3149	21965	1905	1914	3201	3201					0.07810333339955378
ASKKIEGKF	9	Unmodified	_ASKKIEGKF_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.475	1	53.475	52.975	53.975	0								0	0	0	0.35507	1	20588	20588		31.53	2.3803	1		+		3150	21965	1905	1914	3202	3202					0.07810333339955378
ASKKIHTEP	9	Unmodified	_ASKKIHTEP_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;ENST00000482438.2_1_3:49141637-49142166:-|nuORF;ENST00000479495.5_1_3:49140063-49142467:-|nuORF	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.5270690917969	3	337.525825	1009.55564	3.0179	0.0010186	-0.0078518	-2.6502E-06	3.01	0.001016	337.52610560004075	22.655	0.36654	22.655	22.505	22.872	0					22	7	5	0	0	0	0.59802	1	7586	7586		22.58	6.1065	1	1457800			3151	6343	1906	1915	3203	3203					0.05124858817521272
ASKKPLKEK	9	Unmodified	_ASKKPLKEK_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.8273315429688	2	514.826766	1027.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.366	1	11.366	10.866	11.866	0								0	0	0	0.16453	1	2309	2309		56.434	12.317	1				3152	3155	1907	1916	3204	3204					0.12626595265373908
ASKKPLKEK	9	Unmodified	_ASKKPLKEK_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.8270874023438	2	514.826766	1027.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.33	1	11.33	10.83	11.83	0								0	0	0	0.23111	1	2186	2186		46.457	13.644	1				3153	3155	1907	1916	3205	3205					0.12626595265373908
ASKKVRTALD	10	Unmodified	_ASKKVRTALD_					0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.55364990234375	3	363.552262	1087.63496	3.1334	0.0011392	0.59108	0.00021489	3.7245	0.0013541	363.55244478454654	38.526	0.68183	38.526	38.143	38.824	0					36	14	3	0	0	0	0.73274	1	15121	15121		11.097	11.097	1	193340	+		3154	16375	1908	1917	3206	3206					0.09464505771643417
ASKNQFLPA	9	Unmodified	_ASKNQFLPA_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;FNIP1|p.P733Tfs*4|1|0.29|ENSG00000217128|chr5:131672247-131672248|-/T|frameshift_variant;FNIP1|p.K732Nfs*23|1|0.16|ENSG00000217128|chr5:131672248-131672248|T/-|frameshift_variant;FNIP1|p.N877Kfs*2|1|0.45|ENSG00000217128|chr5:131671813-131671814|-/T|frameshift_variant;FNIP1|p.I925Nfs*6|1|0.21|ENSG00000217128|chr5:131671670-131671671|-/T|frameshift_variant	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.8467102050781	3	325.846787	974.51853	0.53174	0.00017326	-0.64783	-0.00021109	-0.11609	-3.7828E-05	325.8465612591638	22.38	0.19297	22.38	22.323	22.516	0					12	4	4	0	0	0	0.30268	1	7270	7270		66.429	22.052	1	852280			3155	11763	1909	1918	3207	3207					0.03025187271748564
ASKPIANNR	9	Unmodified	_ASKPIANNR_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7744140625	2	485.775065	969.535577	-0.08916	-4.3312E-05	-1.2321	-0.00059851	-1.3212	-0.00064183	485.77480208475663	19.042	0.48634	19.042	18.711	19.197	0					22	10	3	0	0	0	0.43488	1	5913	5913		24.519	0	1	483570	+		3156	14966	1910	1919	3208	3208					0.0495910787755065
ASKPKVPPK	9	Unmodified	_ASKPKVPPK_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.L1048*|1|0.18|ENSG00000133858|chr12:71632189-71632189|A/-|frameshift_variant;ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	317.8709411621094	3	317.871044	950.591301	0.5352	0.00017012	-0.72115	-0.00022923	-0.18595	-5.9107E-05	317.870820247807	13.224	0.15927	13.224	13.105	13.265	0					11	4	4	0	0	0	0.60749	1	2972	2972		28.081	13.217	1	700940			3157	3875	1911	1920	3209	3209					0.11402941065182404
ASKRRSRF	8	Unmodified	_ASKRRSRF_					0	0	0		ENSG00000156299|ENST00000541036|TIAM1;nc|ENSG00000156299|Q13009-2|TIAM1;ENST00000469412.5_1_21:32585686-32624433:-|nuORF	ENSG00000156299|ENST00000541036|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.956	1	26.956	26.456	27.456	0								0	0	0	1.7419	1	9590	9590		35.618	0	1				3158	5166	1912	1921	3210	3210					0.07541922725658878
ASKSMGTGVK	10	Unmodified	_ASKSMGTGVK_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2561950683594	2	483.257859	964.501166	-2.9192	-0.0014107	-1.272	-0.0006147	-4.1912	-0.0020254	483.2571945281191	19.867	0.24013	19.867	19.77	20.01	0					10	5	2	0	0	0	0.45669	1	5469	5469		50.034	4.0613	1	285350	+		3159	17830	1913	1922	3211	3211					0.017495236744707654
ASKSRISIH	9	Unmodified	_ASKSRISIH_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.8634338378906	3	333.529569	997.566878	0.5394	0.00017991	-1.3656	-0.00045547	-0.82622	-0.00027557	333.52925519876595	10.559	0.10221	10.559	10.518	10.62	0					12	5	3	0	0	0	0.33044	1	2024	2024		47.657	8.4045	1	179060	+		3160	13329	1914	1923	3212	3212					0.06799680911672112
ASKSVSWKV	9	Unmodified	_ASKSVSWKV_					0	0	0			REV__LRFN2|p.W640Lfs*15|1|0.41|ENSG00000156564|chr6:40392395-40392396|-/G|frameshift_variant	REV__LRFN2|p.W640Lfs*15|1|0.41|ENSG00000156564|chr6:40392395-40392396|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	331.19073486328125	3	331.190553	990.549831	0.52402	0.00017355	-0.27529	-9.1172E-05	0.24873	8.2377E-05	331.19046066056126	14.575	0.45817	14.575	14.522	14.98	0					24	11	4	0	0	0	0.1424	1	3587	3587		66.962	1.4965	1	2260900	+		3161	15634	1915	1924	3213	3213					0.054177603058633395
ASKTFTVQK	9	Unmodified	_ASKTFTVQK_					0	0	0		DSG3|p.T441Lfs*10|1|0.2|ENSG00000134757|chr18:31465363-31465363|A/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.T441Lfs*10|1|0.2|ENSG00000134757|chr18:31465363-31465363|A/-|frameshift_variant	DSG3|p.T441Lfs*10|1|0.2|ENSG00000134757|chr18:31465363-31465363|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	337.1944580078125	3	337.194075	1008.5604	0.51542	0.0001738	-0.54065	-0.00018231	-0.025234	-8.5086E-06	337.19411834147655	14.575	2.2173	14.575	14.445	16.662	0					96	53	4	0	0	0	0.33044	1	3584	3584		54.722	0	1	33125000			3162	850	1916	1925	3214	3214					0.056457429602687625
ASKYKAKQD	9	Unmodified	_ASKYKAKQD_					0	0	0		nc|ENSG00000067992|Q15120-2|PDK3	nc|ENSG00000067992|Q15120-2|PDK3	nc|ENSG00000067992|Q15120-2|PDK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.8572998046875	3	346.857463	1037.55056	0.39568	0.00013725	-0.75715	-0.00026262	-0.36147	-0.00012538	346.85721454215604	20.734	0.16872	20.734	20.669	20.838	0					14	6	4	0	0	0	0.5879	1	5595	5595		23.523	0	1	794940			3163	11434	1917	1926	3215	3215					0.0332855495489639
ASLAAAAKVI	10	Unmodified	_ASLAAAAKVI_					0	0	0			REV__ENST00000358461.6_1_4:7873788-7941597:-|nuORF	REV__ENST00000358461.6_1_4:7873788-7941597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7869873046875	2	457.78711	913.559667	-0.63411	-0.00029029	0.28456	0.00013027	-0.34954	-0.00016002	457.78716860373044	36.634	0.29913	36.634	36.485	36.784	0					17	8	3	0	0	0	0.24256	1	13820	13820		74.255	4.6274	1	460410	+		3164	18541	1918	1927	3216	3216					0.09942948311231703
ASLADIMAK	9	Unmodified	_ASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2495422363281	2	460.249503	918.484453	0.086218	3.9682E-05	-0.6139	-0.00028255	-0.52768	-0.00024286	460.24937711602087	38.24	0.28138	38.24	38.148	38.429	0					43	16	4	0	0	0	0.063171	1	12462	12462		90.601	16.346	1	725520			3165	2846	1919	1928	3217	3217					0.02195022788487222
ASLADIMAK	9	Unmodified	_ASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.24981689453125	2	460.249503	918.484453	-0.89034	-0.00040978	0.23722	0.00010918	-0.65312	-0.0003006	460.2497636270544	38.347	0.31213	38.347	38.242	38.554	0					50	16	4	0	0	0	0.026538	1	12910	12910		112.41	38.156	1	1057500			3166	2846	1919	1928	3218	3218					0.02195022788487222
ASLADIMAK	9	Unmodified	_ASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2491455078125	2	460.249503	918.484453	0.7225	0.00033253	-0.99788	-0.00045927	-0.27538	-0.00012674	460.2490956743253	38.534	0.83631	38.534	38.248	39.084	0					76	29	5	0	0	0	0.0040894	1	15101	15101		162.25	48.841	1	8593500			3167	2846	1919	1928	3219	3219					0.02195022788487222
ASLADIMAK	9	Unmodified	_ASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2497863769531	2	460.249503	918.484453	-0.06429	-2.959E-05	-0.53193	-0.00024482	-0.59622	-0.00027441	460.2494010749443	38.281	0.33576	38.281	38.217	38.553	0					43	16	4	0	0	0	0.012231	1	13691	13691		136.27	31.522	1	910130			3168	2846	1919	1928	3220	3220					0.02195022788487222
ASLADIMAK	9	Unmodified	_ASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.24932861328125	2	460.249503	918.484453	-0.45284	-0.00020842	-0.070005	-3.222E-05	-0.52284	-0.00024064	460.2493540473192	38.501	0.29463	38.501	38.366	38.661	0					13	6	3	0	0	0	0.01873	1	15132	15132		124.08	33.71	1	413820			3169	2846	1919	1928	3221	3221					0.02195022788487222
ASLADIMAK	9	Unmodified	_ASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2491760253906	2	460.249503	918.484453	0.86955	0.00040021	-1.6676	-0.00076752	-0.79806	-0.00036731	460.248831847444	38.485	0.83031	38.485	38.202	39.032	0					43	17	5	0	0	0	0.012231	1	15123	15123		136.27	40.078	1	8237600			3170	2846	1919	1928	3222	3222					0.02195022788487222
ASLADIMAK	9	Oxidation (M)	_ASLADIM(Oxidation (M))AK_		ASLADIM(1)AK		ASLADIM(80)AK	0	0	1		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.24676513671875	2	468.24696	934.479368	0.28901	0.00013533	0.73203	0.00034277	1.021	0.0004781	468.24659255740295	28.706	0.33747	28.706	28.603	28.94	0					21	8	4	0	0	0	0.095583	1	10182	10182		80.455	16.247	1	630710			3171	2846	1919	1929	3223	3223		121			0.00950718925878391
ASLADIMAK	9	Oxidation (M)	_ASLADIM(Oxidation (M))AK_		ASLADIM(1)AK		ASLADIM(67)AK	0	0	1		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2474365234375	2	468.24696	934.479368	-1.0856	-0.00050834	1.5494	0.00072552	0.46383	0.00021719	468.2477489425457	28.496	0.25744	28.496	28.347	28.605	0					15	9	2	0	0	0	0.15163	1	9189	9189		67.494	21.521	1	117800			3172	2846	1919	1929	3224	3224		121			0.00950718925878391
ASLADIMAK	9	Oxidation (M)	_ASLADIM(Oxidation (M))AK_		ASLADIM(1)AK		ASLADIM(71)AK	0	0	1		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2466735839844	2	468.24696	934.479368	0.63571	0.00029767	-1.2786	-0.0005987	-0.6429	-0.00030104	468.2464943637633	28.705	0.5567	28.705	28.465	29.022	0					21	11	4	0	0	0	0.13726	1	10570	10570		70.816	16.04	1	579820			3173	2846	1919	1929	3225	3225		121			0.00950718925878391
ASLADIMAK	9	Oxidation (M)	_ASLADIM(Oxidation (M))AK_		ASLADIM(1)AK		ASLADIM(71)AK	0	0	1		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2471008300781	2	468.24696	934.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.727	1	28.727	28.227	29.227	0								0	0	0	0.10319	1	10442	10442		70.816	17.88	1				3174	2846	1919	1929	3226	3226		121			0.00950718925878391
ASLAGLHALR	10	Unmodified	_ASLAGLHALR_					0	0	0		TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant;nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant	TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.8686828613281	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.391	1	29.391	28.891	29.891	0								0	0	0	0.4201	1	9880	9880		16.717	0	1				3175	7923	1920	1930	3227	3227					0.0841227129131994
ASLAQVAAL	9	Unmodified	_ASLAQVAAL_					0	0	0			REV__ENST00000526926.5_1_8:144718207-144732076:+|nuORF	REV__ENST00000526926.5_1_8:144718207-144732076:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2502746582031	2	422.25036	842.486168	-0.33756	-0.00014254	-0.16076	-6.7881E-05	-0.49832	-0.00021042	422.25028486216996	21.696	0.51603	21.696	21.387	21.903	0					18	10	2	0	0	0	0.22377	1	7118	7118		58.782	0.97068	1	257400	+		3176	20004	1921	1931	3228	3228					0.05862399868760804
ASLATTLTK	9	Unmodified	_ASLATTLTK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526191.1_1_11:14496007-14497407:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.2685241699219	2	453.26875	904.522947	-0.008884	-4.0268E-06	-0.29568	-0.00013402	-0.30456	-0.00013805	453.2685876301965	27.884	0.11985	27.884	27.847	27.967	0					8	4	2	0	0	0	0.095583	1	8656	8656		80.455	22.225	1	120290			3177	3578	1922	1932	3229	3229					0.06686651694667489
ASLATTLTK	9	Unmodified	_ASLATTLTK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526191.1_1_11:14496007-14497407:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2684020996094	2	453.26875	904.522947	0.69043	0.00031295	-1.0114	-0.00045845	-0.32101	-0.0001455	453.2681720067779	28.213	0.25991	28.213	28.081	28.341	0					12	6	3	0	0	0	0.02429	1	9938	9938		114.89	7.8871	1	671710			3178	3578	1922	1932	3230	3230					0.06686651694667489
ASLATTLTK	9	Unmodified	_ASLATTLTK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526191.1_1_11:14496007-14497407:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2684020996094	2	453.26875	904.522947	-1.1974	-0.00054273	0.43708	0.00019811	-0.76028	-0.00034461	453.2688781996251	27.936	0.14372	27.936	27.849	27.992	0					13	5	3	0	0	0	0.15558	1	8944	8944		66.962	4.8545	1	281780			3179	3578	1922	1932	3231	3231					0.06686651694667489
ASLATTLTK	9	Unmodified	_ASLATTLTK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526191.1_1_11:14496007-14497407:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.26837158203125	2	453.26875	904.522947	0.72095	0.00032678	-1.4061	-0.00063736	-0.68519	-0.00031057	453.2680072732938	28.182	0.24773	28.182	28.084	28.331	0					11	5	3	0	0	0	0.015496	1	10309	10309		129.42	30.792	1	1054000			3180	3578	1922	1932	3232	3232					0.06686651694667489
ASLATTLTK	9	Unmodified	_ASLATTLTK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526191.1_1_11:14496007-14497407:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.268310546875	2	453.26875	904.522947	0.0005349	2.4246E-07	-0.59058	-0.00026769	-0.59004	-0.00026745	453.26837987996134	27.995	0.20784	27.995	27.907	28.115	0					10	5	3	0	0	0	0.095583	1	9226	9226		80.455	3.137	1	211810			3181	3578	1922	1932	3233	3233					0.06686651694667489
ASLATTLTK	9	Unmodified	_ASLATTLTK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526191.1_1_11:14496007-14497407:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.26837158203125	2	453.26875	904.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.01	1	28.01	27.51	28.51	0								0	0	0	0.095784	1	9239	9239		72.879	9.3454	1				3182	3578	1922	1932	3234	3234					0.06686651694667489
ASLATTLTK	9	Unmodified	_ASLATTLTK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526191.1_1_11:14496007-14497407:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.26885986328125	2	453.26875	904.522947	0.87727	0.00039764	-1.1483	-0.00052049	-0.27104	-0.00012286	453.26810077250184	28.152	0.26766	28.152	27.993	28.261	0					11	5	3	0	0	0	0.0067848	1	10151	10151		150.36	51.732	1	948190			3183	3578	1922	1932	3235	3235					0.06686651694667489
ASLCLKKPAF	10	Unmodified	_ASLCLKKPAF_					0	0	0		ENST00000356948.10_2_19:811026-811482:+|nuORF	ENST00000356948.10_2_19:811026-811482:+|nuORF	ENST00000356948.10_2_19:811026-811482:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8769226074219	3	359.875689	1076.60524	3.0991	0.0011153	0.49863	0.00017944	3.5977	0.0012947	359.87582976285864	17.657	0.468	17.657	17.447	17.915	0					18	9	4	0	0	0	0.65895	1	5149	5149		27.047	0.3544	1	1075100			3184	8811	1923	1933	3236	3236					0.06999850501961191
ASLDASSNVDK	11	Unmodified	_ASLDASSNVDK_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.77001953125	2	553.769842	1105.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.38	1	21.38	20.88	21.88	0								0	0	0	0.32833	1	6129	6129		48.188	10.376	1				3185	5752	1924	1934	3237	3237					-0.02340964358177189
ASLDGETNLK	10	Unmodified	_ASLDGETNLK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ATP11B|p.H616Cfs*3|1|0.09|ENSG00000058063|chr3:182869310-182869311|TC/-|frameshift_variant;ATP11B|p.Y884Ifs*30|1|0.41|ENSG00000058063|chr3:182884886-182884886|T/-|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.27001953125	2	524.269478	1046.5244	0.72198	0.00037851	0.39985	0.00020963	1.1218	0.00058814	524.2697443426946	25.655	0.13875	25.655	25.606	25.744	0					6	4	2	0	0	0	0.31894	1	7754	7754		65.157	1.6234	1	67320			3186	3069	1925	1935	3238	3238					0.003002409927375993
ASLDGETNLK	10	Unmodified	_ASLDGETNLK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ATP11B|p.H616Cfs*3|1|0.09|ENSG00000058063|chr3:182869310-182869311|TC/-|frameshift_variant;ATP11B|p.Y884Ifs*30|1|0.41|ENSG00000058063|chr3:182884886-182884886|T/-|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2693481445312	2	524.269478	1046.5244	0.091827	4.8142E-05	-0.10344	-5.423E-05	-0.011613	-6.0883E-06	524.2692805587884	25.941	0.30962	25.941	25.732	26.042	0					8	5	2	0	0	0	0.24329	1	8898	8898		74.165	11.187	1	426870			3187	3069	1925	1935	3239	3239					0.003002409927375993
ASLDTGLLLG	10	Unmodified	_ASLDTGLLLG_					0	0	0		ENST00000311956.8_1_11:46700251-46700590:-|nuORF	ENST00000311956.8_1_11:46700251-46700590:-|nuORF	ENST00000311956.8_1_11:46700251-46700590:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.77886962890625	2	480.274032	958.533512	2.3224	0.0011154	0.61939	0.00029747	2.9418	0.0014129	480.2727919017329	40.142	0.49864	40.142	39.987	40.486	0					24	11	4	0	0	0	0.47621	1	15957	15957		47.916	5.5195	1	404890			3188	8561	1926	1936	3240	3240					0.05258634349104341
ASLDYLSNQ	9	Unmodified	_ASLDYLSNQ_					0	0	0		ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant;ENSG00000187151|ENST00000334289|ANGPTL5	ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant	ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.74273681640625	2	505.743096	1009.47164	-0.7485	-0.00037855	0.29297	0.00014817	-0.45553	-0.00023038	505.7434192365339	24.185	0.072868	24.185	24.15	24.223	0					4	2	2	0	0	0	0.46194	1	7375	7375		36.447	3.6343	1	87747			3189	145	1927	1937	3241	3241					-0.032717170700493625
ASLEHVGG	8	Unmodified	_ASLEHVGG_					0	0	0			REV__ENST00000557739.1_1_14:35227840-35228035:-|nuORF	REV__ENST00000557739.1_1_14:35227840-35228035:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	385.1947937011719	2	385.195585	768.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.779	1	17.779	17.279	18.279	0								0	0	0	1.7419	1	4505	4505		37.028	3.5129	1		+		3190	20261	1928	1938	3242	3242					-0.016836057505543067
ASLELPAAKK	10	Unmodified	_ASLELPAAKK_					0	0	0		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.2101135253906	3	343.209725	1026.60735	0.38018	0.00013048	-0.072716	-2.4957E-05	0.30746	0.00010552	343.20972006765965	24.965	0.41588	24.965	24.616	25.032	0					13	12	2	0	0	0	0.61187	1	7456	7456		61.691	18.04	1	34317			3191	2615	1929	1939	3243	3243					0.09510602511409161
ASLELPAAKK	10	Unmodified	_ASLELPAAKK_					0	0	0		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.3109741210938	2	514.310949	1026.60735	0.02049	1.0538E-05	0.20494	0.0001054	0.22543	0.00011594	514.3111182783116	25.25	0.64242	25.25	24.773	25.415	0					27	15	2	0	0	0	0.17315	1	8582	8582		82.75	3.0379	1	941720			3192	2615	1929	1939	3244	3244					0.09510602511409161
ASLGAKQL	8	Unmodified	_ASLGAKQL_					0	0	0			REV__nc|ENSG00000124615|Q9NZB8-4|MOCS1	REV__nc|ENSG00000124615|Q9NZB8-4|MOCS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.2371826171875	2	394.237253	786.459953	0.11486	4.5282E-05	-0.29915	-0.00011794	-0.18429	-7.2654E-05	394.23709636374144	22.277	0.16323	22.277	22.17	22.334	0					5	3	2	0	0	0	0.44433	1	7531	7531		65.803	4.8312	1	303740	+		3193	14408	1930	1940	3245	3245					0.05818130697275592
ASLGASVHK	9	Unmodified	_ASLGASVHK_					0	0	0		ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2454833984375	2	435.245609	868.476666	-0.42759	-0.00018611	0.079277	3.4505E-05	-0.34831	-0.0001516	435.2456885107307	17.616	0.089409	17.616	17.568	17.658	0					6	2	3	0	0	0	0.028876	1	5010	5010		110.12	30.407	1	317130			3194	7926	1931	1941	3246	3246					0.03716631583245089
ASLGASVHK	9	Unmodified	_ASLGASVHK_					0	0	0		ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.24554443359375	2	435.245609	868.476666	0.35494	0.00015449	-0.91041	-0.00039625	-0.55547	-0.00024177	435.24531574535433	17.575	0.11696	17.575	17.517	17.634	0					4	2	2	0	0	0	0.0406	1	5254	5254		98.629	21.855	1	161540			3195	7926	1931	1941	3247	3247					0.03716631583245089
ASLGASVHK	9	Unmodified	_ASLGASVHK_					0	0	0		ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2453918457031	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.583	1	17.583	17.083	18.083	0								0	0	0	0.12601	1	5100	5100		65.465	10.689	1				3196	7926	1931	1941	3248	3248					0.03716631583245089
ASLGFLVAK	9	Unmodified	_ASLGFLVAK_					0	0	0		ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant;ENSG00000197363|ENST00000359971|ZNF517	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.27679443359375	2	453.276378	904.538203	-0.53842	-0.00024405	-0.063341	-2.8711E-05	-0.60176	-0.00027276	453.27638957133445	40.912	0.28147	40.912	40.775	41.057	0					12	8	2	0	0	0	0.17854	1	15554	15554		64.207	18.255	1	143600			3197	7452	1932	1942	3249	3249					0.0821156328250936
ASLGFLVAK	9	Unmodified	_ASLGFLVAK_					0	0	0		ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant;ENSG00000197363|ENST00000359971|ZNF517	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.276611328125	2	453.276378	904.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.637	1	40.637	40.137	41.137	0								0	0	0	0.1633	1	13588	13588		56.721	7.2795	1				3198	7452	1932	1942	3250	3250					0.0821156328250936
ASLGFLVAK	9	Unmodified	_ASLGFLVAK_					0	0	0		ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant;ENSG00000197363|ENST00000359971|ZNF517	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2760314941406	2	453.276378	904.538203	0.7208	0.00032672	-1.1429	-0.00051803	-0.42206	-0.00019131	453.27575905430564	40.806	0.23045	40.806	40.756	40.987	0					8	5	2	0	0	0	0.032052	1	16084	16084		107.01	48.226	1	131760			3199	7452	1932	1942	3251	3251					0.0821156328250936
ASLGFLVAK	9	Unmodified	_ASLGFLVAK_					0	0	0		ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant;ENSG00000197363|ENST00000359971|ZNF517	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	ZNF517|p.C121Afs*105|2|0.1|ENSG00000197363|chr8:144807272-144807272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2762145996094	2	453.276378	904.538203	2.5151	0.00114	-2.6644	-0.0012077	-0.14923	-6.7644E-05	453.27496834476426	40.743	0.28336	40.743	40.643	40.926	0					6	4	2	0	0	0	0.010494	1	16210	16210		139.97	62.653	1	260630			3200	7452	1932	1942	3252	3252					0.0821156328250936
ASLGGFLAQK	10	Unmodified	_ASLGGFLAQK_					0	0	0		SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant;SPG21|p.I163Nfs*17|1|0.26|ENSG00000090487|chr15:64970187-64970188|-/T|frameshift_variant;nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant	SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2815856933594	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.316	1	38.316	37.816	38.816	0								0	0	0	0.010396	1	14553	14553		106.68	31.031	1				3201	1836	1933	1943	3253	3253					0.054177603058633395
ASLGGFLAQK	10	Unmodified	_ASLGGFLAQK_					0	0	0		SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant;SPG21|p.I163Nfs*17|1|0.26|ENSG00000090487|chr15:64970187-64970188|-/T|frameshift_variant;nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant	SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2821044921875	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.269	1	38.269	37.769	38.769	0								0	0	0	0.097225	1	15033	15033		80.455	8.2114	1				3202	1836	1933	1943	3254	3254					0.054177603058633395
ASLGLKFNK	9	Unmodified	_ASLGLKFNK_					0	0	0		nc|ENSG00000247077|Q96HS1-2|PGAM5;ENSG00000247077|ENST00000498926|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2923278808594	2	489.292559	976.570566	-0.43004	-0.00021042	-0.29885	-0.00014623	-0.72889	-0.00035664	489.2923402927255	28.596	0.25558	28.596	28.474	28.73	0					13	6	3	0	0	0	0.085655	1	10115	10115		82.75	21.779	1	460310			3203	7972	1934	1944	3255	3255					0.0813435068552053
ASLGLKFNK	9	Unmodified	_ASLGLKFNK_					0	0	0		nc|ENSG00000247077|Q96HS1-2|PGAM5;ENSG00000247077|ENST00000498926|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2928466796875	2	489.292559	976.570566	-1.2525	-0.00061282	1.8776	0.00091871	0.62517	0.00030589	489.29350603709065	28.35	0.15022	28.35	28.262	28.412	0					11	5	3	0	0	0	0.24095	1	9123	9123		56.721	11.699	1	165300			3204	7972	1934	1944	3256	3256					0.0813435068552053
ASLGLKFNK	9	Unmodified	_ASLGLKFNK_					0	0	0		nc|ENSG00000247077|Q96HS1-2|PGAM5;ENSG00000247077|ENST00000498926|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.29254150390625	2	489.292559	976.570566	0.60795	0.00029747	-0.46393	-0.000227	0.14402	7.0467E-05	489.2923505609197	28.589	0.41289	28.589	28.465	28.878	0					21	8	4	0	0	0	0.16806	1	10493	10493		65.465	8.7443	1	734720			3205	7972	1934	1944	3257	3257					0.0813435068552053
ASLGSCFAEIR	11	Unmodified	_ASLGSCFAEIR_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.19488525390625	3	385.193858	1152.55974	0.84808	0.00032668	1.2755	0.00049133	2.1236	0.000818	385.1945252853678	17.978	0.24551	17.978	17.896	18.142	0					11	5	3	0	0	0	0.40021	1	5172	5172		51.528	6.5056	1	1526100			3206	6810	1935	1945	3258	3258					-0.010434197510903687
ASLIGSTAAK	10	Unmodified	_ASLIGSTAAK_					0	0	0			REV__PXMP2|p.E62Kfs*12|1|0.09|ENSG00000176894|chr12:132690318-132690318|A/-|frameshift_variant	REV__PXMP2|p.E62Kfs*12|1|0.09|ENSG00000176894|chr12:132690318-132690318|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7662658691406	2	459.766374	917.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.52	1	26.52	26.02	27.02	0								0	0	0	0.37129	1	9158	9158		39.253	0	1		+		3207	16676	1936	1946	3259	3259					0.05613767551892579
ASLLSQLLR	9	Unmodified	_ASLLSQLLR_					0	0	0		ENST00000506318.1_1_5:140071164-140071422:+|nuORF;ENST00000513912.1_1_5:140071143-140073330:+|nuORF;nc|ENSG00000112855|P49590-2|HARS2;ENSG00000112855|ENST00000230771|HARS2	ENST00000506318.1_1_5:140071164-140071422:+|nuORF	ENST00000506318.1_1_5:140071164-140071422:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.2098693847656	3	334.209836	999.60768	-0.70262	-0.00023482	0.72118	0.00024103	0.018558	6.2022E-06	334.21006618066	14.961	0.075016	14.961	14.897	14.972	0					5	3	2	0	0	0	0.59802	1	3327	3327		16.717	0	1	116890			3208	2765	1937	1947	3260	3260					0.10786022231275183
ASLLYPGAQ	9	Unmodified	_ASLLYPGAQ_					0	0	0		ENST00000506465.1_1_5:176873223-176874669:-|nuORF	ENST00000506465.1_1_5:176873223-176874669:-|nuORF	ENST00000506465.1_1_5:176873223-176874669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.249267578125	2	460.247818	918.481082	2.5374	0.0011679	0.60723	0.00027948	3.1447	0.0014473	460.248227095944	38.474	0.44308	38.474	38.334	38.778	0					32	9	5	0	0	0	0.071197	1	15116	15116		87.754	5.4493	1	5142300			3209	10193	1938	1948	3261	3261					0.018580960061512997
ASLMHSFILK	10	Unmodified	_ASLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.8209228515625	2	573.820627	1145.6267	1.9744	0.001133	-1.6584	-0.00095162	0.31603	0.00018134	573.8196777725038	38.984	0.30481	38.984	38.891	39.196	0					22	10	4	0	0	0	0.2538	1	15298	15298		72.879	14.097	1	505610			3210	3454	1939	1949	3262	3262					0.05971235530682861
ASLMHSFILK	10	Unmodified	_ASLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.8832702636719	3	382.882843	1145.6267	0.60718	0.00023248	-1.0022	-0.00038371	-0.39498	-0.00015123	382.8824728463712	38.929	0.43606	38.929	38.778	39.214	0					26	9	4	0	0	0	0.50881	1	15314	15314		65.157	22.293	1	1361900			3211	3454	1939	1949	3263	3263					0.05971235530682861
ASLMHSFILK	10	Unmodified	_ASLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8209228515625	2	573.820627	1145.6267	1.6666	0.00095636	-1.3654	-0.00078347	0.30129	0.00017288	573.8198973485947	38.929	0.47858	38.929	38.778	39.256	0					23	10	4	0	0	0	0.018513	1	15330	15330		126.24	24.642	1	742950			3212	3454	1939	1949	3264	3264					0.05971235530682861
ASLMITTK	8	Oxidation (M)	_ASLM(Oxidation (M))ITTK_		ASLM(1)ITTK		ASLM(61)ITTK	0	0	1		ENST00000464833.1_1_3:184102666-184104037:+|nuORF;ENST00000460627.5_1_3:184101080-184104037:+|nuORF;ENST00000470150.5_1_3:184100608-184105741:+|nuORF;CHRD|p.F806Lfs*5|1|0.25|ENSG00000090539|chr3:184387435-184387436|-/C|frameshift_variant;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	ENST00000464833.1_1_3:184102666-184104037:+|nuORF	ENST00000464833.1_1_3:184102666-184104037:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.74505615234375	2	440.744053	879.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.676	1	12.676	12.176	13.176	0								0	0	0	1.7419	1	2911	2911		60.972	13.056	1				3213	536	1940	1950	3265	3265		30			0.02899620414200399
ASLMNDDFEK	10	Oxidation (M)	_ASLM(Oxidation (M))NDDFEK_		ASLM(1)NDDFEK		ASLM(56)NDDFEK	0	0	1		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.2573852539062	2	593.258253	1184.50195	-0.54244	-0.00032181	-1.479	-0.00087745	-2.0215	-0.0011993	593.2577527151574	19.013	0.12782	19.013	18.965	19.093	0					10	4	3	0	0	0	0.39827	1	5076	5076		56.434	6.8977	1	100740			3214	1992	1941	1951	3266	3266		94			-0.08291726467177796
ASLNFSKLK	9	Unmodified	_ASLNFSKLK_					0	0	0			REV__ENST00000447541.5_1_3:49713127-49713830:+|nuORF	REV__ENST00000447541.5_1_3:49713127-49713830:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53515625	3	336.53432	1006.58113	1.4875	0.0005006	-1.1926	-0.00040133	0.29496	9.9265E-05	336.5338957336989	47.698	0.42836	47.698	47.527	47.956	0					31	25	2	0	0	0	0.61124	1	18142	18142		24.519	0	1	76674	+		3215	15954	1942	1952	3267	3267					0.07810333339944009
ASLPAALGK	9	Unmodified	_ASLPAALGK_					0	0	0			REV__nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	REV__nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.2528076171875	2	414.252903	826.491253	-0.38671	-0.00016019	-0.00030921	-1.2809E-07	-0.38702	-0.00016032	414.2528694542611	28.171	1.1117	28.171	27.813	28.925	0					61	22	4	0	0	0	0.41113	1	10259	10259		40.778	3.6191	1	977350	+		3216	21154	1943	1953	3268	3268					0.07106703731381003
ASLPAKLQ	8	Unmodified	_ASLPAKLQ_					0	0	0			REV__ENST00000487292.1_3_15:42132349-42136005:+|nuORF	REV__ENST00000487292.1_3_15:42132349-42136005:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2537536621094	2	414.252903	826.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.064	1	28.064	27.564	28.564	0								0	0	0	1.7419	1	8723	8723		55.504	0	1		+		3217	17705	1944	1954	3269	3269					0.07106703731381003
ASLPGGVLK	9	Unmodified	_ASLPGGVLK_					0	0	0		GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.260009765625	2	421.260728	840.506903	0.41039	0.00017288	-0.36795	-0.000155	0.042438	1.7877E-05	421.26057660942786	31.299	0.45259	31.299	31.044	31.497	0					33	18	2	0	0	0	0.30951	1	9985	9985		49.442	7.0454	1	138020			3218	7082	1945	1955	3270	3270					0.0802699024843605
ASLPGGVLK	9	Unmodified	_ASLPGGVLK_					0	0	0		GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.2605895996094	2	421.260728	840.506903	0.4008	0.00016884	-0.80773	-0.00034026	-0.40693	-0.00017142	421.2603197948893	31.509	0.34209	31.509	31.343	31.685	0					11	8	2	0	0	0	0.22377	1	11489	11489		58.782	14.665	1	54327			3219	7082	1945	1955	3271	3271					0.0802699024843605
ASLPGGVLK	9	Unmodified	_ASLPGGVLK_					0	0	0		GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.26116943359375	2	421.260728	840.506903	-0.12473	-5.2543E-05	-0.14783	-6.2276E-05	-0.27256	-0.00011482	421.26064190371716	31.53	0.59822	31.53	31.228	31.827	0					34	13	3	0	0	0	0.37197	1	11805	11805		44.117	3.5442	1	614510			3220	7082	1945	1955	3272	3272					0.0802699024843605
ASLPGGVLK	9	Unmodified	_ASLPGGVLK_					0	0	0		GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.26068115234375	2	421.260728	840.506903	0.12266	5.167E-05	-0.29036	-0.00012232	-0.1677	-7.0646E-05	421.2606652569899	31.28	0.38558	31.28	31.117	31.503	0					18	10	2	0	0	0	0.2873	1	10727	10727		51.335	7.2187	1	107220			3221	7082	1945	1955	3273	3273					0.0802699024843605
ASLPLAVTK	9	Unmodified	_ASLPLAVTK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.28155517578125	2	450.28166	898.548768	0.029314	1.3199E-05	-0.43445	-0.00019562	-0.40514	-0.00018243	450.2813677941121	32.243	0.3561	32.243	32.098	32.455	0					36	15	4	0	0	0	0.1424	1	10382	10382		69.628	12.907	1	771000			3222	5386	1946	1956	3274	3274					0.09543545936946884
ASLPLAVTK	9	Unmodified	_ASLPLAVTK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.28125	2	450.28166	898.548768	-0.1012	-4.5567E-05	-0.43769	-0.00019708	-0.53888	-0.00024265	450.28136844706086	32.468	0.53297	32.468	32.331	32.864	0					32	13	4	0	0	0	0.021015	1	12331	12331		120.31	10.828	1	3721800			3223	5386	1946	1956	3275	3275					0.09543545936946884
ASLPLAVTK	9	Unmodified	_ASLPLAVTK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2813720703125	2	450.28166	898.548768	0.50136	0.00022575	-0.77235	-0.00034777	-0.27099	-0.00012202	450.2813046220616	32.281	0.29018	32.281	32.15	32.44	0					19	8	3	0	0	0	0.22837	1	11176	11176		58.23	12.278	1	667180			3224	5386	1946	1956	3276	3276					0.09543545936946884
ASLPLAVTK	9	Unmodified	_ASLPLAVTK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.28143310546875	2	450.28166	898.548768	-0.40173	-0.00018089	0.14766	6.6486E-05	-0.25407	-0.00011441	450.28170784164814	32.477	0.57107	32.477	32.321	32.892	0					29	11	4	0	0	0	0.014413	1	12260	12260		131.62	33.034	1	5182700			3225	5386	1946	1956	3277	3277					0.09543545936946884
ASLPLAVTK	9	Unmodified	_ASLPLAVTK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2813720703125	2	450.28166	898.548768	0.87598	0.00039444	-1.2164	-0.00054771	-0.34039	-0.00015327	450.28105435999595	32.464	0.41754	32.464	32.304	32.721	0					22	8	4	0	0	0	0.067603	1	12252	12252		89.029	20.183	1	4180000			3226	5386	1946	1956	3278	3278					0.09543545936946884
ASLPLPDL	8	Unmodified	_ASLPLPDL_					0	0	0			REV__ENST00000300952.6_1_19:1258292-1258616:+|nuORF	REV__ENST00000300952.6_1_19:1258292-1258616:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.23828125	2	413.239461	824.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.996	1	44.996	44.496	45.496	0								0	0	0	1.7419	1	15377	15377		38.806	6.8513	1		+		3227	18200	1947	1957	3279	3279					0.04511595120197853
ASLPLSHAVI	10	Unmodified	_ASLPLSHAVI_					0	0	0		ENSG00000105428|ENST00000222033|ZNRF4	ENSG00000105428|ENST00000222033|ZNRF4	ENSG00000105428|ENST00000222033|ZNRF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5335693359375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.212	1	25.212	24.712	25.712	0								0	0	0	0.4201	1	7814	7814		33.922	11.342	1				3228	2358	1948	1958	3280	3280					0.0781033333993264
ASLPPTKK	8	Unmodified	_ASLPPTKK_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL;nc|ENSG00000186409|Q5VVM6-2|CCDC30;ENSG00000186409|ENST00000657597|CCDC30;nc|ENSG00000186409|Q5VVM6|CCDC30	ENSG00000166268|ENST00000552032|MYRFL;ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.26025390625	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.289	1	31.289	30.789	31.789	0								0	0	0	1.7419	1	10754	10754		35.618	0	1				3229	5881;7135	1949	1959	3281	3281					0.08026990248424681
ASLPPTKK	8	Unmodified	_ASLPPTKK_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL;nc|ENSG00000186409|Q5VVM6-2|CCDC30;ENSG00000186409|ENST00000657597|CCDC30;nc|ENSG00000186409|Q5VVM6|CCDC30	ENSG00000166268|ENST00000552032|MYRFL;ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.2605895996094	2	421.260728	840.506903	-0.32519	-0.00013699	-0.10256	-4.3202E-05	-0.42775	-0.00018019	421.26064326611294	31.521	0.71065	31.521	31.224	31.935	0					34	14	3	0	0	0	0.66989	1	11710	11710		37.812	2.1932	1	822170			3230	5881;7135	1949	1959	3282	3282					0.08026990248424681
ASLPSELIVHI	11	Unmodified	_ASLPSELIVHI_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.5644836425781	3	393.564168	1177.67067	0.45878	0.00018056	-0.078209	-3.078E-05	0.38057	0.00014978	393.56410077276644	35.989	0.13633	35.989	35.921	36.057	0					9	4	3	0	0	0	0.65797	1	13997	13997		31.634	1.0654	1	206980			3231	5788	1950	1960	3283	3283					0.08894543228689145
ASLPSELIVHI	11	Unmodified	_ASLPSELIVHI_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.5640563964844	3	393.564168	1177.67067	0.43896	0.00017276	-0.95461	-0.0003757	-0.51565	-0.00020294	393.5637911163068	35.952	0.26475	35.952	35.817	36.081	0					10	5	2	0	0	0	0.71641	1	13929	13929		26.063	2.6855	1	344790			3232	5788	1950	1960	3284	3284					0.08894543228689145
ASLPTHLIT	9	Unmodified	_ASLPTHLIT_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.776611328125	2	476.776742	951.538931	-0.36375	-0.00017343	-0.059889	-2.8553E-05	-0.42364	-0.00020198	476.7769133178267	38.281	0.28699	38.281	38.12	38.407	0					22	14	2	0	0	0	0.45358	1	13697	13697		37.159	0	1	101210			3233	1438	1951	1961	3285	3285					0.06122357931565148
ASLPVRNAK	9	Unmodified	_ASLPVRNAK_					0	0	0		nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.28765869140625	2	478.287808	954.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.276	1	18.276	17.776	18.776	0								0	0	0	0.18541	1	5441	5441		53.089	3.6474	1				3234	11567	1952	1962	3286	3286					0.08196582399989438
ASLQSIIHK	9	Unmodified	_ASLQSIIHK_					0	0	0		nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.7955322265625	2	498.795466	995.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.805	1	28.805	28.305	29.305	0								0	0	0	0.13137	1	9028	9028		64.207	3.2353	1				3235	1908	1953	1963	3287	3287					0.078414491972012
ASLQSIIHK	9	Unmodified	_ASLQSIIHK_					0	0	0		nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.8660583496094	3	332.86607	995.57638	0.64961	0.00021623	-0.7694	-0.00025611	-0.11979	-3.9873E-05	332.86579370082654	29.048	0.24989	29.048	28.968	29.218	0					18	6	4	0	0	0	0.41113	1	10343	10343		56.434	15.007	1	753210			3236	1908	1953	1963	3288	3288					0.078414491972012
ASLQSIIHK	9	Unmodified	_ASLQSIIHK_					0	0	0		nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.79534912109375	2	498.795466	995.57638	-0.23631	-0.00011787	0.34928	0.00017422	0.11297	5.6351E-05	498.7956001285826	29.043	0.25003	29.043	28.957	29.207	0					9	6	2	0	0	0	0.014413	1	10336	10336		131.62	33.034	1	563480			3237	1908	1953	1963	3289	3289					0.078414491972012
ASLQSIIHK	9	Unmodified	_ASLQSIIHK_					0	0	0		nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.795654296875	2	498.795466	995.57638	-1.0866	-0.00054199	0.68653	0.00034244	-0.40006	-0.00019955	498.79578568093405	28.804	0.088049	28.804	28.769	28.857	0					5	3	2	0	0	0	0.24095	1	9338	9338		56.721	3.3696	1	76326			3238	1908	1953	1963	3290	3290					0.078414491972012
ASLQSIIHK	9	Unmodified	_ASLQSIIHK_					0	0	0		nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.8660583496094	3	332.86607	995.57638	-0.0073369	-2.4422E-06	0.11021	3.6686E-05	0.10288	3.4244E-05	332.86609886975907	29.012	0.26465	29.012	28.909	29.174	0					12	5	3	0	0	0	0.12239	1	10570	10570		90.601	25.135	1	439380			3239	1908	1953	1963	3291	3291					0.078414491972012
ASLRLAYRGA	10	Unmodified	_ASLRLAYRGA_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.87725830078125	3	359.876969	1076.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.519	1	17.519	17.019	18.019	0								0	0	0	0.4201	1	4384	4384		23.523	0.94304	1		+		3240	21045	1954	1964	3292	3292					0.07383656320052978
ASLSGSLSAK	10	Unmodified	_ASLSGSLSAK_					0	0	0		ENST00000588822.1_1_17:74723429-74729181:+|nuORF;ENST00000589977.5_1_17:74725800-74729181:+|nuORF;ENST00000590964.5_1_17:74722977-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7558898925781	2	460.756007	919.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.408	1	24.408	23.908	24.908	0								0	0	0	0.41137	1	7199	7199		27.047	8.7229	1				3241	10926	1955	1965	3293	3293					0.0344917717224007
ASLSGSLSAK	10	Unmodified	_ASLSGSLSAK_					0	0	0		ENST00000588822.1_1_17:74723429-74729181:+|nuORF;ENST00000589977.5_1_17:74725800-74729181:+|nuORF;ENST00000590964.5_1_17:74722977-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.7554016113281	2	460.756007	919.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.425	1	24.425	23.925	24.925	0								0	0	0	0.3598	1	7475	7475		41.427	0.64845	1				3242	10926	1955	1965	3294	3294					0.0344917717224007
ASLSGSLSAK	10	Unmodified	_ASLSGSLSAK_					0	0	0		ENST00000588822.1_1_17:74723429-74729181:+|nuORF;ENST00000589977.5_1_17:74725800-74729181:+|nuORF;ENST00000590964.5_1_17:74722977-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7558898925781	2	460.756007	919.497461	0.72238	0.00033284	-0.64925	-0.00029915	0.073125	3.3693E-05	460.75561660634065	24.653	0.16622	24.653	24.545	24.712	0					6	3	2	0	0	0	0.4287	1	8666	8666		53.089	11.662	1	550900			3243	10926	1955	1965	3295	3295					0.0344917717224007
ASLSGSLSAK	10	Unmodified	_ASLSGSLSAK_					0	0	0		ENST00000588822.1_1_17:74723429-74729181:+|nuORF;ENST00000589977.5_1_17:74725800-74729181:+|nuORF;ENST00000590964.5_1_17:74722977-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7554016113281	2	460.756007	919.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.479	1	24.479	23.979	24.979	0								0	0	0	0.27575	1	7638	7638		54.722	12.326	1				3244	10926	1955	1965	3296	3296					0.0344917717224007
ASLSITTKK	9	Unmodified	_ASLSITTKK_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;ANK3|p.K3778Nfs*26|1|0.37|ENSG00000151150|chr10:60069547-60069547|T/-|frameshift_variant;ANK3|p.M3608Cfs*4|1|0.37|ENSG00000151150|chr10:60070059-60070059|T/-|frameshift_variant;ANK3|p.K3331Nfs*6|1|0.32|ENSG00000151150|chr10:60070888-60070888|T/-|frameshift_variant;ANK3|p.I3117Sfs*2|3|0.22|ENSG00000151150|chr10:60071532-60071532|T/-|frameshift_variant;ANK3|p.I2751Yfs*21|1|0.07|ENSG00000151150|chr10:60072630-60072630|T/-|frameshift_variant;ANK3|p.P2846Tfs*8|1|0.32|ENSG00000151150|chr10:60072346-60072347|-/C|frameshift_variant;ANK3|p.I2751Nfs*14|2|0.36|ENSG00000151150|chr10:60072629-60072630|-/T|frameshift_variant;ANK3|p.K2612Rfs*25|1|0.43|ENSG00000151150|chr10:60073046-60073046|T/-|frameshift_variant;ANK3|p.L1778Tfs*66|1|0.38|ENSG00000151150|chr10:60075550-60075551|-/G|frameshift_variant;ANK3|p.R961Kfs*27|1|0.13|ENSG00000151150|chr10:60114291-60114292|-/T|frameshift_variant;ANK3|p.L1161Pfs*13|1|0.32|ENSG00000151150|chr10:60088205-60088206|-/G|frameshift_variant;ANK3|p.K1120Sfs*35|1|0.28|ENSG00000151150|chr10:60088328-60088328|T/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7895202636719	2	474.78985	947.565146	-0.53499	-0.00025401	-0.30021	-0.00014254	-0.8352	-0.00039654	474.78967987326473	20.204	0.11812	20.204	20.145	20.263	0					4	2	2	0	0	0	0.27123	1	6524	6524		53.089	12.516	1	230490			3245	148	1956	1966	3297	3297					0.08926627103039664
ASLSLTLQK	9	Unmodified	_ASLSLTLQK_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.79052734375	2	480.78985	959.565146	0.07743	3.7227E-05	-1.3937	-0.00067007	-1.3163	-0.00063285	480.79001869645623	34.01	0.12565	34.01	33.947	34.073	0					7	5	2	0	0	0	0.16806	1	11106	11106		65.465	10.689	1	39093			3246	1989	1957	1967	3298	3298					0.08374627103057719
ASLSLTLQK	9	Unmodified	_ASLSLTLQK_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.78955078125	2	480.78985	959.565146	-0.16265	-7.8202E-05	0.20815	0.00010008	0.045499	2.1876E-05	480.7898779688614	34.293	0.16391	34.293	34.208	34.372	0					7	4	2	0	0	0	0.02953	1	12767	12767		109.48	44.013	1	184240			3247	1989	1957	1967	3299	3299					0.08374627103057719
ASLSLTLQK	9	Unmodified	_ASLSLTLQK_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7896423339844	2	480.78985	959.565146	-0.51461	-0.00024742	0.42356	0.00020365	-0.091043	-4.3773E-05	480.78991659861003	34.249	0.13498	34.249	34.201	34.336	0					6	3	2	0	0	0	0.16806	1	13199	13199		65.465	0	1	111220			3248	1989	1957	1967	3300	3300					0.08374627103057719
ASLSMGLVPY	10	Unmodified	_ASLSMGLVPY_					0	0	0			REV__ENST00000585971.1_1_18:33069229-33077838:-|nuORF	REV__ENST00000585971.1_1_18:33069229-33077838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	346.51727294921875	3	346.516049	1036.52632	0.48078	0.0001666	3.6777	0.0012744	4.1585	0.001441	346.5172842792707	17.249	0.18899	17.249	17.174	17.363	0					6	5	2	0	0	0	0.58189	1	4270	4270		36.447	1.2947	1	103340	+		3249	20479	1958	1968	3301	3301					0.009515784770428581
ASLSPSVSK	9	Unmodified	_ASLSPSVSK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2455749511719	2	438.245275	874.475997	3.1721	0.0013902	-3.5199	-0.0015426	-0.34771	-0.00015238	438.2437485213595	21.211	0.16966	21.211	21.102	21.271	0					8	5	2	0	0	0	0.22837	1	6072	6072		58.23	5.2932	1	88435			3250	3082	1959	1969	3302	3302					0.03373792143531773
ASLSPSVSK	9	Unmodified	_ASLSPSVSK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.24359130859375	2	438.245275	874.475997	-0.39257	-0.00017204	-0.7677	-0.00033644	-1.1603	-0.00050848	438.24487800448634	21.381	0.46376	21.381	21.028	21.492	0					16	9	3	0	0	0	0.048471	1	7072	7072		95.815	13.51	1	761740			3251	3082	1959	1969	3303	3303					0.03373792143531773
ASLSPSVSK	9	Unmodified	_ASLSPSVSK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2449951171875	2	438.245275	874.475997	-0.57488	-0.00025194	-0.025017	-1.0964E-05	-0.5999	-0.0002629	438.2451873289522	21.395	0.75926	21.395	20.844	21.603	0					25	15	4	0	0	0	0.070005	1	6968	6968		88.177	8.7259	1	942350			3252	3082	1959	1969	3304	3304					0.03373792143531773
ASLTAALAK	9	Unmodified	_ASLTAALAK_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.258056640625	2	423.258185	844.501818	0.35827	0.00015164	-0.62553	-0.00026476	-0.26726	-0.00011312	423.2579350356495	29.099	0.22232	29.099	29.024	29.247	0					13	8	3	0	0	0	0.02953	1	9145	9145		109.48	27.238	1	323280			3253	7502	1960	1970	3305	3305					0.07334686385797795
ASLTAALAK	9	Unmodified	_ASLTAALAK_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	423.2581787109375	2	423.258185	844.501818	-1.1579	-0.00049008	1.3478	0.00057047	0.18992	8.0387E-05	423.258817422217	29.155	0.16238	29.155	29.058	29.22	0					12	6	3	0	0	0	0.35021	1	9457	9457		45.972	6.7194	1	82932			3254	7502	1960	1970	3306	3306					0.07334686385797795
ASLTAALAK	9	Unmodified	_ASLTAALAK_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.25823974609375	2	423.258185	844.501818	-0.24491	-0.00010366	-0.096665	-4.0914E-05	-0.34158	-0.00014458	423.25808117330416	29.388	0.28672	29.388	29.295	29.582	0					13	6	3	0	0	0	0.0049871	1	10863	10863		158.07	67.705	1	1205100			3255	7502	1960	1970	3307	3307					0.07334686385797795
ASLTAALAK	9	Unmodified	_ASLTAALAK_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2580261230469	2	423.258185	844.501818	0.87137	0.00036881	-1.0131	-0.00042879	-0.1417	-5.9977E-05	423.25783118303116	29.375	0.23991	29.375	29.282	29.522	0					13	5	3	0	0	0	0.078509	1	10883	10883		85.161	18.732	1	566670			3256	7502	1960	1970	3308	3308					0.07334686385797795
ASLTAALAK	9	Unmodified	_ASLTAALAK_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.2582702636719	2	423.258185	844.501818	0.13743	5.8169E-05	0.22039	9.328E-05	0.35782	0.00015145	423.25815792628066	29.178	0.23209	29.178	29.094	29.326	0					11	6	2	0	0	0	0.035062	1	9765	9765		104.06	37.628	1	179900			3257	7502	1960	1970	3309	3309					0.07334686385797795
ASLTAALAK	9	Unmodified	_ASLTAALAK_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.25799560546875	2	423.258185	844.501818	-0.026239	-1.1106E-05	-0.17585	-7.4431E-05	-0.20209	-8.5536E-05	423.2580788360601	29.173	0.1834	29.173	29.086	29.27	0					12	5	3	0	0	0	0.056004	1	9769	9769		93.143	21.266	1	387170			3258	7502	1960	1970	3310	3310					0.07334686385797795
ASLTAALAK	9	Unmodified	_ASLTAALAK_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.2581481933594	2	423.258185	844.501818	-0.35225	-0.00014909	0.10015	4.2389E-05	-0.2521	-0.0001067	423.2582565237593	29.315	0.41006	29.315	29.207	29.617	0					17	8	4	0	0	0	0.02953	1	10712	10712		109.48	35.223	1	2563700			3259	7502	1960	1970	3311	3311					0.07334686385797795
ASLTDTVNK	9	Unmodified	_ASLTDTVNK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.75341796875	2	474.753464	947.492375	0.29919	0.00014204	-0.33075	-0.00015702	-0.031558	-1.4982E-05	474.75333617960126	23.184	0.36286	23.184	23.093	23.456	0					11	8	2	0	0	0	0.0023831	1	7650	7650		172.25	62.129	1	1828200			3260	5632	1961	1971	3312	3312					0.016528733096379256
ASLTDTVNK	9	Unmodified	_ASLTDTVNK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.75311279296875	2	474.753464	947.492375	-1.5815	-0.00075082	0.83187	0.00039493	-0.74963	-0.00035589	474.75382626900887	22.93	0.1921	22.93	22.847	23.039	0					15	6	3	0	0	0	0.019258	1	6815	6815		123.21	25.735	1	440170			3261	5632	1961	1971	3313	3313					0.016528733096379256
ASLTDTVNK	9	Unmodified	_ASLTDTVNK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7532043457031	2	474.753464	947.492375	-0.44737	-0.00021239	-0.098193	-4.6618E-05	-0.54556	-0.00025901	474.75339664279295	22.955	0.26599	22.955	22.781	23.047	0					8	6	2	0	0	0	0.035062	1	6936	6936		104.06	24.344	1	297170			3262	5632	1961	1971	3314	3314					0.016528733096379256
ASLTDTVNK	9	Unmodified	_ASLTDTVNK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.75299072265625	2	474.753464	947.492375	-2.631	-0.0012491	1.7151	0.00081426	-0.91584	-0.0004348	474.75410353874594	22.948	0.17813	22.948	22.855	23.033	0					9	4	3	0	0	0	0.047855	1	6929	6929		96.034	33.926	1	271360			3263	5632	1961	1971	3315	3315					0.016528733096379256
ASLTDTVNK	9	Unmodified	_ASLTDTVNK_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7532043457031	2	474.753464	947.492375	0.71236	0.0003382	-1.1644	-0.00055279	-0.45202	-0.0002146	474.75284410114847	23.125	0.21258	23.125	23.022	23.235	0					8	4	2	0	0	0	0.012936	1	7807	7807		134.77	47.069	1	1963700			3264	5632	1961	1971	3316	3316					0.016528733096379256
ASLTEIEH	8	Unmodified	_ASLTEIEH_					0	0	0		nc|ENSG00000143365|P51449-2|RORC;ENSG00000143365|ENST00000318247|RORC	nc|ENSG00000143365|P51449-2|RORC	nc|ENSG00000143365|P51449-2|RORC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2272033691406	2	450.227082	898.439611	0.032676	1.4712E-05	-0.31525	-0.00014193	-0.28257	-0.00012722	450.22708801831243	20.37	0.13377	20.37	20.31	20.444	0					6	4	2	0	0	0	0.60719	1	5442	5442		47.916	3.5384	1	58270			3265	4542	1962	1972	3317	3317					-0.013670847531784602
ASLTLLICGY	10	Unmodified	_ASLTLLICGY_					0	0	0			REV__ENST00000409881.1_1_7:30898614-30931617:+|nuORF	REV__ENST00000409881.1_1_7:30898614-30931617:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.8610534667969	3	351.859816	1052.55762	0.70349	0.00024753	2.4632	0.0008667	3.1667	0.0011142	351.8607971119339	16.539	0.13906	16.539	16.451	16.59	0					5	3	2	0	0	0	0.67199	1	4515	4515		23.523	1.7423	1	288770	+		3266	13811	1963	1973	3318	3318					0.033441515111235276
ASLTQKPV	8	Unmodified	_ASLTQKPV_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.250244140625	2	422.25036	842.486168	-0.18647	-7.8738E-05	-0.17221	-7.2714E-05	-0.35868	-0.00015145	422.25027649716105	21.734	0.6153	21.734	21.374	21.989	0					20	12	3	0	0	0	0.5676	1	7261	7261		53.351	2.016	1	224730	+		3267	16534	1964	1974	3319	3319					0.05862399868760804
ASLVFHSTSM	10	Unmodified	_ASLVFHSTSM_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2633666992188	2	540.263142	1078.51173	0.30683	0.00016577	1.5944	0.00086141	1.9013	0.0010272	540.2638291023696	36.859	0.20375	36.859	36.788	36.991	0					8	6	2	0	0	0	0.66185	1	14388	14388		26.693	1.1189	1	111220			3268	7717	1965	1975	3320	3320					-0.024384936711157934
ASLVGQTSPK	10	Unmodified	_ASLVGQTSPK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2767639160156	2	494.277106	986.53966	-0.067133	-3.3182E-05	-0.13197	-6.5227E-05	-0.1991	-9.841E-05	494.27702852104915	21.675	0.30122	21.675	21.5	21.801	0					20	10	3	0	0	0	0.087581	1	5970	5970		97.597	30.635	1	379650			3269	1277	1966	1976	3321	3321					0.04585152580625618
ASLVGQTSPK	10	Unmodified	_ASLVGQTSPK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2765197753906	2	494.277106	986.53966	-0.45123	-0.00022303	-0.067252	-3.3241E-05	-0.51848	-0.00025627	494.27704314198024	21.987	0.30989	21.987	21.809	22.119	0					21	7	4	0	0	0	0.01313	1	7063	7063		131.09	50.633	1	1496100			3270	1277	1966	1976	3322	3322					0.04585152580625618
ASLVGQTSPK	10	Unmodified	_ASLVGQTSPK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.27679443359375	2	494.277106	986.53966	-0.75301	-0.0003722	0.4561	0.00022544	-0.29691	-0.00014676	494.27733528344737	21.878	0.51352	21.878	21.492	22.005	0					17	10	3	0	0	0	0.0068379	1	7320	7320		159.34	73.474	1	611150			3271	1277	1966	1976	3323	3323					0.04585152580625618
ASLVLTTGLGA	11	Unmodified	_ASLVLTTGLGA_					0	0	0		ENSG00000259803|ENST00000682282|SLC22A31;nc|ENSG00000259803|A6NKX4|SLC22A31	ENSG00000259803|ENST00000682282|SLC22A31	ENSG00000259803|ENST00000682282|SLC22A31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7950134277344	2	501.795132	1001.57571	-0.55862	-0.00028031	0.34061	0.00017092	-0.21801	-0.0001094	501.79535543727815	26.452	0.16673	26.452	26.343	26.509	0					5	3	2	0	0	0	0.45317	1	9484	9484		47.657	3.2801	1	183300			3272	8039	1967	1977	3324	3324					0.07498609757476515
ASLVYRLVS	9	Unmodified	_ASLVYRLVS_					0	0	0		PCDH9|p.F303Cfs*4|1|0.33|ENSG00000184226|chr13:67227532-67227533|AA/-|frameshift_variant;PCDH9|p.F580Lfs*14|2|0.24|ENSG00000184226|chr13:67226701-67226701|A/-|frameshift_variant;PCDH9|p.L689Sfs*9|1|0.24|ENSG00000184226|chr13:67226376-67226376|G/-|frameshift_variant;PCDH9|p.A818Cfs*77|1|0.16|ENSG00000184226|chr13:67225989-67225990|-/A|frameshift_variant;nc|ENSG00000184226|Q9HC56-2|PCDH9;ENSG00000184226|ENST00000377865|PCDH9	PCDH9|p.F303Cfs*4|1|0.33|ENSG00000184226|chr13:67227532-67227533|AA/-|frameshift_variant	PCDH9|p.F303Cfs*4|1|0.33|ENSG00000184226|chr13:67227532-67227533|AA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.977	1	34.977	34.477	35.477	0								0	0	0	0.3368	1	11456	11456		35.152	9.578	1				3273	7003	1968	1978	3325	3325					0.07810333339944009
ASMAIKNPK	9	Unmodified	_ASMAIKNPK_					0	0	0		HYOU1|p.T96M|1|0.19|ENSG00000149428|chr11:119055317-119055317|G/A|missense_variant;ENST00000533381.5_1_11:118925895-118927580:-|nuORF;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1	HYOU1|p.T96M|1|0.19|ENSG00000149428|chr11:119055317-119055317|G/A|missense_variant	HYOU1|p.T96M|1|0.19|ENSG00000149428|chr11:119055317-119055317|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2701721191406	2	480.27077	958.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.453	1	18.453	17.953	18.953	0								0	0	0	0.27939	1	4818	4818		39.253	5.0803	1				3274	4882	1969	1979	3326	3326					0.046064179167160546
ASMASESTVK	10	Unmodified	_ASMASESTVK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7429504394531	2	505.744782	1009.47501	-0.74605	-0.00037731	-1.3869	-0.00070142	-2.133	-0.0010787	505.74398018519275	25.592	0.16999	25.592	25.531	25.701	0					7	5	2	0	0	0	0.536	1	7987	7987		41.427	0.85399	1	69556			3275	3735	1970	1980	3327	3327					-0.02934790287679334
ASMAVSDVLV	10	Oxidation (M)	_ASM(Oxidation (M))AVSDVLV_		ASM(1)AVSDVLV		ASM(43)AVSDVLV	0	0	1		ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5089416503906	3	336.507442	1006.5005	0.51641	0.00017377	3.4317	0.0011548	3.9481	0.0013286	336.5088066148705	25.581	0.30231	25.581	25.442	25.744	0					19	7	4	0	0	0	0.52275	1	8746	8746		42.864	11.334	1	946980			3276	5205	1971	1981	3328	3328		210			-0.0024931576524522825
ASMDNNSKFAK	11	Unmodified	_ASMDNNSKFAK_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	606.7881469726562	2	606.787512	1211.56047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.136	1	18.136	17.636	18.636	0								0	0	0	0.30435	1	4688	4688		51.528	27.009	1				3277	4938	1972	1982	3329	3329					-0.036846251020506315
ASMEEVFHR	9	Unmodified	_ASMEEVFHR_					0	0	0		nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	nc|ENSG00000126217|O15068-5|MCF2L	nc|ENSG00000126217|O15068-5|MCF2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.2583618164062	2	553.258391	1104.50223	1.3183	0.00072935	-0.88097	-0.0004874	0.43731	0.00024195	553.2578235801475	29.745	0.13872	29.745	29.66	29.799	0					9	6	2	0	0	0	0.22823	1	9420	9420		51.193	22.043	1	99081			3278	3465	1973	1983	3330	3330					-0.045842619566428766
ASMGGYTQTMK	11	Unmodified	_ASMGGYTQTMK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.765869140625	2	587.765191	1173.51583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.427	1	26.427	25.927	26.927	0								0	0	0	0.06838	1	9457	9457		82.831	26.397	1				3279	2277	1974	1984	3331	3331					-0.06398772239731443
ASMKKVKSL	9	Oxidation (M)	_ASM(Oxidation (M))KKVKSL_		ASM(1)KKVKSL		ASM(46)KKVKSL	0	0	1		ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENST00000369426.9_1_1:119575536-119588262:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342712402344	3	336.535444	1006.5845	0.24112	8.1145E-05	-4.0023	-0.0013469	-3.7612	-0.0012658	336.53439956648424	18.565	1.7487	18.565	18.465	20.214	0					145	54	5	0	0	0	0.35021	1	4775	4775		45.972	8.1607	1	248330000			3280	8942	1975	1985	3332	3332		353			0.08147260122302669
ASMKKVKSL	9	Oxidation (M)	_ASM(Oxidation (M))KKVKSL_		ASM(1)KKVKSL		ASM(46)KKVKSL	0	0	1		ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENST00000369426.9_1_1:119575536-119588262:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5347900390625	3	336.535444	1006.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.772	1	18.772	18.272	19.272	0								0	0	0	0.23445	1	5820	5820		45.972	12.051	1				3281	8942	1975	1985	3333	3333		353			0.08147260122302669
ASMPDNTAAQK	11	Unmodified	_ASMPDNTAAQK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.2664184570312	2	567.266413	1132.51827	1.1801	0.00066943	-0.95184	-0.00053994	0.22825	0.00012948	567.2659298979398	18.5	0.25299	18.5	18.369	18.622	0					25	10	4	0	0	0	0.69524	1	4578	4578		28.081	1.2854	1	1432900			3282	2007;3852	1976	1986	3334	3334					-0.04268600510431497
ASMPDNTAAQK	11	Unmodified	_ASMPDNTAAQK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.266845703125	2	567.266413	1132.51827	0.19934	0.00011308	0.23853	0.00013531	0.43787	0.00024839	567.2667333242379	18.798	0.7547	18.798	18.369	19.124	0					34	19	5	0	0	0	0.098165	1	5535	5535		90.149	28.041	1	8648400			3283	2007;3852	1976	1986	3335	3335					-0.04268600510431497
ASMPDNTAAQK	11	Unmodified	_ASMPDNTAAQK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.2669677734375	2	567.266413	1132.51827	1.9401	0.0011006	-1.6778	-0.00095175	0.26235	0.00014882	567.2655620560612	18.701	0.63854	18.701	18.493	19.132	0					30	13	5	0	0	0	6.5347E-05	1	5772	5772		153.1	62.325	1	10168000			3284	2007;3852	1976	1986	3336	3336					-0.04268600510431497
ASMPDNTAAQK	11	Unmodified	_ASMPDNTAAQK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.2664184570312	2	567.266413	1132.51827	0.72859	0.00041331	0.27582	0.00015647	1.0044	0.00056977	567.267086867843	18.582	0.1851	18.582	18.406	18.591	0					10	5	3	0	0	0	0.45905	1	4852	4852		47.228	9.4162	1	186870			3285	2007;3852	1976	1986	3337	3337					-0.04268600510431497
ASMPDNTAAQK	11	Unmodified	_ASMPDNTAAQK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.267333984375	2	567.266413	1132.51827	-1.2249	-0.00069486	1.5978	0.00090639	0.3729	0.00021153	567.2673892812722	18.573	0.31949	18.573	18.398	18.717	0					24	9	5	0	0	0	0.29287	1	4832	4832		63.426	5.1965	1	2021600			3286	2007;3852	1976	1986	3338	3338					-0.04268600510431497
ASMPDNTAAQK	11	Unmodified	_ASMPDNTAAQK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2680053710938	2	567.266413	1132.51827	1.6748	0.00095006	-0.19998	-0.00011344	1.4748	0.00083662	567.2664109469295	18.71	0.34222	18.71	18.555	18.897	0					16	7	4	0	0	0	6.0253E-05	1	5643	5643		156.16	73.856	1	1509300			3287	2007;3852	1976	1986	3339	3339					-0.04268600510431497
ASMPVDIAK	9	Unmodified	_ASMPVDIAK_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.24981689453125	2	466.249503	930.484453	0.061645	2.8742E-05	-1.0507	-0.00048987	-0.98901	-0.00046113	466.24922118940225	29.963	0.20507	29.963	29.868	30.073	0					16	7	3	0	0	0	0.27249	1	9497	9497		52.937	6.9847	1	259480			3288	2533	1977	1987	3340	3340					0.016430227884939086
ASMPVDIAK	9	Unmodified	_ASMPVDIAK_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.24945068359375	2	466.249503	930.484453	0.43904	0.0002047	-1.1966	-0.00055792	-0.75758	-0.00035322	466.24907418639555	30.252	0.24919	30.252	30.167	30.416	0					16	6	3	0	0	0	0.18416	1	10879	10879		63.534	12.198	1	1635600			3289	2533	1977	1987	3341	3341					0.016430227884939086
ASMPVDIAK	9	Unmodified	_ASMPVDIAK_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2486572265625	2	466.249503	930.484453	-0.18027	-8.4052E-05	-0.89749	-0.00041846	-1.0778	-0.00050251	466.2490930612499	30.039	0.1935	30.039	29.94	30.133	0					9	4	3	0	0	0	0.27249	1	10170	10170		52.937	1.6012	1	258350			3290	2533	1977	1987	3342	3342					0.016430227884939086
ASMPVDIAK	9	Unmodified	_ASMPVDIAK_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.24908447265625	2	466.249503	930.484453	-0.49894	-0.00023263	-0.30267	-0.00014112	-0.80161	-0.00037375	466.24935580347045	30.206	0.30951	30.206	30.099	30.408	0					16	6	4	0	0	0	0.054723	1	11142	11142		93.598	8.6821	1	1611400			3291	2533	1977	1987	3343	3343					0.016430227884939086
ASMSAFDPLK	10	Unmodified	_ASMSAFDPLK_					0	0	0		TFG|p.N173K|2|0.38|ENSG00000114354|chr3:100732611-100732611|C/A|missense_variant;nc|ENSG00000114354|Q92734-4|TFG;nc|ENSG00000114354|Q92734-3|TFG;nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG	TFG|p.N173K|2|0.38|ENSG00000114354|chr3:100732611-100732611|C/A|missense_variant	TFG|p.N173K|2|0.38|ENSG00000114354|chr3:100732611-100732611|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7658081054688	2	533.765517	1065.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.819	1	40.819	40.319	41.319	0								0	0	0	0.070616	1	15558	15558		85.862	36.326	1				3292	2842	1978	1988	3344	3344					-0.013656095283749892
ASMSAFDPLK	10	Unmodified	_ASMSAFDPLK_					0	0	0		TFG|p.N173K|2|0.38|ENSG00000114354|chr3:100732611-100732611|C/A|missense_variant;nc|ENSG00000114354|Q92734-4|TFG;nc|ENSG00000114354|Q92734-3|TFG;nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG	TFG|p.N173K|2|0.38|ENSG00000114354|chr3:100732611-100732611|C/A|missense_variant	TFG|p.N173K|2|0.38|ENSG00000114354|chr3:100732611-100732611|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7684936523438	2	533.765517	1065.51648	1.8125	0.00096747	-0.77314	-0.00041267	1.0394	0.00055479	533.7670337649612	40.743	0.31458	40.743	40.578	40.892	0					12	5	3	0	0	0	0.041742	2	16197	16177;16197		112.11	37.852	1	184210			3293	2842	1978	1988	3345;3346	3346					-0.013656095283749892
ASMVGGRAK	9	Unmodified	_ASMVGGRAK_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;PIGO|p.R731Vfs*17|3|0.41|ENSG00000165282|chr9:35091696-35091696|G/-|frameshift_variant;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.73974609375	2	438.739637	875.464721	-3.1076	-0.0013634	2.8108	0.0012332	-0.29679	-0.00013021	438.7409613004113	14.598	0.11075	14.598	14.545	14.656	0					6	4	2	0	0	0	0.4966	1	3117	3117		32.812	0.85756	1	133120			3294	5781	1979	1989	3347	3347					0.02200691568395996
ASNCFAIRH	9	Carbamidomethyl (C)	_ASNC(Carbamidomethyl (C))FAIRH_	ASNC(1)FAIRH		ASNC(62)FAIRH		0	1	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B;ARHGEF7-ITM2B|2|fusion;ARHGEF7-ITM2B|3|fusion;ARHGEF7-ITM2B|1|fusion;ARHGEF7-ITM2B|4|fusion;ITM2B|p.R243C|1|0.39|ENSG00000136156|chr13:48261150-48261150|C/T|missense_variant	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.1747131347656	3	359.174909	1074.5029	0.44709	0.00016058	-0.848	-0.00030458	-0.40091	-0.000144	359.17447347995085	22.332	0.15604	22.332	22.25	22.406	0					6	4	2	0	0	0	0.19605	1	6307	6307		62.107	36.533	1	60219			3295	4058	1980	1990	3348	3348	175				-0.03137422516942934
ASNCFAIRH	9	Carbamidomethyl (C)	_ASNC(Carbamidomethyl (C))FAIRH_	ASNC(1)FAIRH		ASNC(62)FAIRH		0	1	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B;ARHGEF7-ITM2B|2|fusion;ARHGEF7-ITM2B|3|fusion;ARHGEF7-ITM2B|1|fusion;ARHGEF7-ITM2B|4|fusion;ITM2B|p.R243C|1|0.39|ENSG00000136156|chr13:48261150-48261150|C/T|missense_variant	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.17486572265625	3	359.174909	1074.5029	0.72482	0.00026034	-1.0139	-0.00036418	-0.28911	-0.00010384	359.1745733109229	22.65	0.25577	22.65	22.561	22.817	0					13	6	3	0	0	0	0.19605	1	7404	7404		62.107	36.533	1	676880			3296	4058	1980	1990	3349	3349	175				-0.03137422516942934
ASNFISKTK	9	Unmodified	_ASNFISKTK_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.5221862792969	3	332.522192	994.544745	0.52208	0.0001736	-0.52166	-0.00017346	0.00041909	1.3936E-07	332.52200109302044	13.043	0.15656	13.043	12.994	13.151	0					7	4	2	0	0	0	0.61124	1	2887	2887		20.837	4.1198	1	523750	+		3297	13584	1981	1991	3350	3350					0.04725456443247822
ASNFKSPVK	9	Unmodified	_ASNFKSPVK_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.275390625	2	489.274367	976.53418	-0.1004	-4.9124E-05	-0.31219	-0.00015274	-0.41259	-0.00020187	489.2742471485991	19.79	0.26831	19.79	19.605	19.873	0					16	8	2	0	0	0	0.15558	1	5131	5131		66.962	24.566	1	120170			3298	7700	1982	1992	3351	3351					0.04497473788808293
ASNFKSPVK	9	Unmodified	_ASNFKSPVK_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2741394042969	2	489.274367	976.53418	0.78408	0.00038363	-0.94974	-0.00046469	-0.16566	-8.1056E-05	489.27382343050533	20.119	0.61778	20.119	19.784	20.402	0					33	13	4	0	0	0	0.011893	1	6159	6159		136.99	54.749	1	963150			3299	7700	1982	1992	3352	3352					0.04497473788808293
ASNFKSPVK	9	Unmodified	_ASNFKSPVK_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2741394042969	2	489.274367	976.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.844	1	19.844	19.344	20.344	0								0	0	0	0.19616	1	5445	5445		51.528	15.081	1				3300	7700	1982	1992	3353	3353					0.04497473788808293
ASNFKSPVK	9	Unmodified	_ASNFKSPVK_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2740173339844	2	489.274367	976.53418	-0.075388	-3.6885E-05	-0.48518	-0.00023739	-0.56057	-0.00027427	489.2741166283452	20.037	0.57094	20.037	19.726	20.297	0					20	11	2	0	0	0	0.15558	1	6394	6394		66.962	11.458	1	473620			3301	7700	1982	1992	3354	3354					0.04497473788808293
ASNFKSPVK	9	Unmodified	_ASNFKSPVK_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.27471923828125	2	489.274367	976.53418	0.54502	0.00026667	0.15338	7.5047E-05	0.69841	0.00034171	489.27434101939275	19.897	0.27599	19.897	19.673	19.949	0					9	6	2	0	0	0	0.28504	1	5482	5482		51.528	7.1506	1	61257			3302	7700	1982	1992	3355	3355					0.04497473788808293
ASNFKSPVK	9	Unmodified	_ASNFKSPVK_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.27410888671875	2	489.274367	976.53418	-0.51775	-0.00025332	0.24144	0.00011813	-0.27632	-0.00013519	489.2744105859431	20.007	0.77024	20.007	19.69	20.46	0					35	15	4	0	0	0	0.034688	1	6247	6247		104.42	47.702	1	816350			3303	7700	1982	1992	3356	3356					0.04497473788808293
ASNLHALAH	9	Unmodified	_ASNLHALAH_					0	0	0		ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant;ZFP36L2|p.Y98Rfs*4|1|0.14|ENSG00000152518|chr2:43225512-43225513|AG/-|frameshift_variant;ZFP36L2|p.F119Ifs*7|1|0.3|ENSG00000152518|chr2:43225449-43225450|-/T|frameshift_variant;ZFP36L2|p.E103Gfs*23|2|0.66|ENSG00000152518|chr2:43225498-43225499|-/T|frameshift_variant;ZFP36L2|p.Y98Lfs*86|1|0.3|ENSG00000152518|chr2:43225502-43225511|AGGGTGCCGT/-|frameshift_variant;ZFP36L2|p.G144Afs*43|5|0.19|ENSG00000152518|chr2:43225373-43225373|C/-|frameshift_variant;ZFP36L2|p.H201Pfs*259|1|0.56|ENSG00000152518|chr2:43225199-43225202|GTAT/-|frameshift_variant;ZFP36L2|p.K173Vfs*300|1|0.38|ENSG00000152518|chr2:43225286-43225287|TT/-|frameshift_variant;ZFP36L2|p.S151Yfs*323|1|0.23|ENSG00000152518|chr2:43225352-43225353|-/T|frameshift_variant;ZFP36L2|p.Q138Afs*336|1|0.38|ENSG00000152518|chr2:43225393-43225394|-/A|frameshift_variant;ZFP36L2|p.I215Hfs*259|1|0.31|ENSG00000152518|chr2:43225162-43225163|-/A|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.41|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant;ZFP36L2|p.F162Sfs*314|1|0.37|ENSG00000152518|chr2:43225319-43225320|-/AGGGCCG|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2481384277344	2	467.248683	932.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.455	1	19.455	18.955	19.955	0								0	0	0	0.22284	1	5036	5036		47.657	12.039	1				3304	5015	1983	1993	3357	3357					0.013871498147523198
ASNLHALAH	9	Unmodified	_ASNLHALAH_					0	0	0		ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant;ZFP36L2|p.Y98Rfs*4|1|0.14|ENSG00000152518|chr2:43225512-43225513|AG/-|frameshift_variant;ZFP36L2|p.F119Ifs*7|1|0.3|ENSG00000152518|chr2:43225449-43225450|-/T|frameshift_variant;ZFP36L2|p.E103Gfs*23|2|0.66|ENSG00000152518|chr2:43225498-43225499|-/T|frameshift_variant;ZFP36L2|p.Y98Lfs*86|1|0.3|ENSG00000152518|chr2:43225502-43225511|AGGGTGCCGT/-|frameshift_variant;ZFP36L2|p.G144Afs*43|5|0.19|ENSG00000152518|chr2:43225373-43225373|C/-|frameshift_variant;ZFP36L2|p.H201Pfs*259|1|0.56|ENSG00000152518|chr2:43225199-43225202|GTAT/-|frameshift_variant;ZFP36L2|p.K173Vfs*300|1|0.38|ENSG00000152518|chr2:43225286-43225287|TT/-|frameshift_variant;ZFP36L2|p.S151Yfs*323|1|0.23|ENSG00000152518|chr2:43225352-43225353|-/T|frameshift_variant;ZFP36L2|p.Q138Afs*336|1|0.38|ENSG00000152518|chr2:43225393-43225394|-/A|frameshift_variant;ZFP36L2|p.I215Hfs*259|1|0.31|ENSG00000152518|chr2:43225162-43225163|-/A|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.41|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant;ZFP36L2|p.F162Sfs*314|1|0.37|ENSG00000152518|chr2:43225319-43225320|-/AGGGCCG|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2481994628906	2	467.248683	932.482814	0.37782	0.00017653	-1.6257	-0.00075961	-1.2479	-0.00058307	467.2481468467392	19.787	0.2316	19.787	19.706	19.937	0					10	5	2	0	0	0	0.36892	1	6044	6044		44.377	3.8046	1	622980			3305	5015	1983	1993	3358	3358					0.013871498147523198
ASNLHALAH	9	Unmodified	_ASNLHALAH_					0	0	0		ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant;ZFP36L2|p.Y98Rfs*4|1|0.14|ENSG00000152518|chr2:43225512-43225513|AG/-|frameshift_variant;ZFP36L2|p.F119Ifs*7|1|0.3|ENSG00000152518|chr2:43225449-43225450|-/T|frameshift_variant;ZFP36L2|p.E103Gfs*23|2|0.66|ENSG00000152518|chr2:43225498-43225499|-/T|frameshift_variant;ZFP36L2|p.Y98Lfs*86|1|0.3|ENSG00000152518|chr2:43225502-43225511|AGGGTGCCGT/-|frameshift_variant;ZFP36L2|p.G144Afs*43|5|0.19|ENSG00000152518|chr2:43225373-43225373|C/-|frameshift_variant;ZFP36L2|p.H201Pfs*259|1|0.56|ENSG00000152518|chr2:43225199-43225202|GTAT/-|frameshift_variant;ZFP36L2|p.K173Vfs*300|1|0.38|ENSG00000152518|chr2:43225286-43225287|TT/-|frameshift_variant;ZFP36L2|p.S151Yfs*323|1|0.23|ENSG00000152518|chr2:43225352-43225353|-/T|frameshift_variant;ZFP36L2|p.Q138Afs*336|1|0.38|ENSG00000152518|chr2:43225393-43225394|-/A|frameshift_variant;ZFP36L2|p.I215Hfs*259|1|0.31|ENSG00000152518|chr2:43225162-43225163|-/A|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.41|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant;ZFP36L2|p.F162Sfs*314|1|0.37|ENSG00000152518|chr2:43225319-43225320|-/AGGGCCG|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.24822998046875	2	467.248683	932.482814	0.6506	0.00030399	-2.7079	-0.0012653	-2.0573	-0.00096126	467.24777711904176	19.667	0.36954	19.667	19.609	19.978	0					17	7	3	0	0	0	0.056004	1	6267	6267		93.143	35.691	1	950500			3306	5015	1983	1993	3359	3359					0.013871498147523198
ASNLHALAH	9	Unmodified	_ASNLHALAH_					0	0	0		ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant;ZFP36L2|p.Y98Rfs*4|1|0.14|ENSG00000152518|chr2:43225512-43225513|AG/-|frameshift_variant;ZFP36L2|p.F119Ifs*7|1|0.3|ENSG00000152518|chr2:43225449-43225450|-/T|frameshift_variant;ZFP36L2|p.E103Gfs*23|2|0.66|ENSG00000152518|chr2:43225498-43225499|-/T|frameshift_variant;ZFP36L2|p.Y98Lfs*86|1|0.3|ENSG00000152518|chr2:43225502-43225511|AGGGTGCCGT/-|frameshift_variant;ZFP36L2|p.G144Afs*43|5|0.19|ENSG00000152518|chr2:43225373-43225373|C/-|frameshift_variant;ZFP36L2|p.H201Pfs*259|1|0.56|ENSG00000152518|chr2:43225199-43225202|GTAT/-|frameshift_variant;ZFP36L2|p.K173Vfs*300|1|0.38|ENSG00000152518|chr2:43225286-43225287|TT/-|frameshift_variant;ZFP36L2|p.S151Yfs*323|1|0.23|ENSG00000152518|chr2:43225352-43225353|-/T|frameshift_variant;ZFP36L2|p.Q138Afs*336|1|0.38|ENSG00000152518|chr2:43225393-43225394|-/A|frameshift_variant;ZFP36L2|p.I215Hfs*259|1|0.31|ENSG00000152518|chr2:43225162-43225163|-/A|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.41|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant;ZFP36L2|p.F162Sfs*314|1|0.37|ENSG00000152518|chr2:43225319-43225320|-/AGGGCCG|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	ZFP36L2|p.S89Gfs*11|1|0.44|ENSG00000152518|chr2:43225532-43225539|GCCGCGCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2482604980469	2	467.248683	932.482814	0.61842	0.00028895	-2.3977	-0.0011203	-1.7792	-0.00083135	467.2480735534232	19.682	0.36973	19.682	19.574	19.944	0					18	7	3	0	0	0	0.12239	1	6140	6140		74.255	33.477	1	633290			3307	5015	1983	1993	3360	3360					0.013871498147523198
ASNPATFQR	9	Unmodified	_ASNPATFQR_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.252197265625	2	496.251423	990.488293	-0.060721	-3.0133E-05	-0.27995	-0.00013893	-0.34067	-0.00016906	496.25120961545787	21.414	0.27783	21.414	21.228	21.506	0					21	9	3	0	0	0	0.37744	1	5878	5878		43.651	14.501	1	116650			3308	11822	1984	1994	3361	3361					-0.007331713934149775
ASNPATFQR	9	Unmodified	_ASNPATFQR_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2511901855469	2	496.251423	990.488293	-0.3561	-0.00017671	-0.020006	-9.9281E-06	-0.3761	-0.00018664	496.2514215447217	21.699	0.36205	21.699	21.461	21.823	0					17	8	3	0	0	0	0.13907	1	6942	6942		70.399	30.34	1	595430			3309	11822	1984	1994	3362	3362					-0.007331713934149775
ASNPATFQR	9	Unmodified	_ASNPATFQR_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2511901855469	2	496.251423	990.488293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.472	1	21.472	20.972	21.972	0								0	0	0	0.19616	1	6170	6170		51.528	7.411	1				3310	11822	1984	1994	3363	3363					-0.007331713934149775
ASNPATFQR	9	Unmodified	_ASNPATFQR_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2512512207031	2	496.251423	990.488293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.643	1	21.643	21.143	22.143	0								0	0	0	0.14179	1	7207	7207		61.765	15.792	1				3311	11822	1984	1994	3364	3364					-0.007331713934149775
ASNPCGNIQR	10	Carbamidomethyl (C)	_ASNPC(Carbamidomethyl (C))GNIQR_	ASNPC(1)GNIQR		ASNPC(53)GNIQR		0	1	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.764892578125	2	558.764372	1115.51419	0.52702	0.00029448	-0.062195	-3.4752E-05	0.46483	0.00025973	558.7641775251296	19.039	0.17102	19.039	18.953	19.124	0					7	4	2	0	0	0	0.4287	1	5685	5685		53.089	15.277	1	375080			3312	2718	1985	1995	3365	3365	108				-0.038946452134723586
ASNPVIKKK	9	Unmodified	_ASNPVIKKK_					0	0	0		nc|ENSG00000117650|P51955-4|NEK2	nc|ENSG00000117650|P51955-4|NEK2	nc|ENSG00000117650|P51955-4|NEK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.8135986328125	2	492.813659	983.612765	-0.52201	-0.00025725	-0.026639	-1.3128E-05	-0.54865	-0.00027038	492.8136863616412	14.011	0.64545	14.011	13.733	14.378	0					41	16	4	0	0	0	0.026538	1	3270	3270		112.41	14.938	1	4774800			3313	11496	1986	1996	3366	3366					0.12030326093895383
ASNPVIKKK	9	Unmodified	_ASNPVIKKK_					0	0	0		nc|ENSG00000117650|P51955-4|NEK2	nc|ENSG00000117650|P51955-4|NEK2	nc|ENSG00000117650|P51955-4|NEK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.81353759765625	2	492.813659	983.612765	-1.5079	-0.0007431	1.1703	0.00057672	-0.33763	-0.00016639	492.814217125278	13.761	0.24247	13.761	13.561	13.804	0					29	13	3	0	0	0	0.25716	1	2845	2845		54.776	6.8607	1	421200			3314	11496	1986	1996	3367	3367					0.12030326093895383
ASNPVIKKK	9	Unmodified	_ASNPVIKKK_					0	0	0		nc|ENSG00000117650|P51955-4|NEK2	nc|ENSG00000117650|P51955-4|NEK2	nc|ENSG00000117650|P51955-4|NEK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.81353759765625	2	492.813659	983.612765	-0.7422	-0.00036577	0.36019	0.0001775	-0.38202	-0.00018826	492.813848103929	13.965	0.44561	13.965	13.721	14.167	0					23	9	4	0	0	0	0.037924	1	3481	3481		101.25	27.278	1	2180600			3315	11496	1986	1996	3368	3368					0.12030326093895383
ASNWLYLAK	9	Unmodified	_ASNWLYLAK_					0	0	0		ENSG00000162552|ENST00000290167|WNT4	ENSG00000162552|ENST00000290167|WNT4	ENSG00000162552|ENST00000290167|WNT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.290771484375	2	533.290017	1064.56548	1.7406	0.00092827	-0.88809	-0.00047361	0.85256	0.00045466	533.2893276817005	42.759	0.33404	42.759	42.613	42.947	0					27	16	3	0	0	0	0.058553	1	16764	16764		96.034	96.034	1	230250			3316	5470	1987	1997	3369	3369					0.03578046822894976
ASNWLYLAK	9	Unmodified	_ASNWLYLAK_					0	0	0		ENSG00000162552|ENST00000290167|WNT4	ENSG00000162552|ENST00000290167|WNT4	ENSG00000162552|ENST00000290167|WNT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2904052734375	2	533.290017	1064.56548	1.7797	0.00094911	-1.5784	-0.00084173	0.20135	0.00010738	533.2890930310642	42.737	0.33932	42.737	42.621	42.96	0					14	10	2	0	0	0	0.093587	1	17069	17069		83.647	38.625	1	159320			3317	5470	1987	1997	3370	3370					0.03578046822894976
ASNYEVIMK	9	Unmodified	_ASNYEVIMK_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7675170898438	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.212	1	31.212	30.712	31.712	0								0	0	0	0.097963	1	11645	11645		72.243	21.051	1				3318	1424	1988	1998	3371	3371					-0.008136095283589384
ASPAVGEKLK	10	Unmodified	_ASPAVGEKLK_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2960205078125	2	500.295299	998.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.435	1	18.435	17.935	18.935	0								0	0	0	0.4201	1	5393	5393		14.865	1.4108	1				3319	2312	1989	1999	3372	3372					0.07670029477321805
ASPHRSLG	8	Unmodified	_ASPHRSLG_					0	0	0		ENST00000569505.5_1_16:84217022-84220612:-|nuORF	ENST00000569505.5_1_16:84217022-84220612:-|nuORF	ENST00000569505.5_1_16:84217022-84220612:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.7218322753906	2	412.722301	823.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.152	1	15.152	14.652	15.652	0								0	0	0	1.7419	1	3239	3239		44.117	3.3386	1				3320	10781	1990	2000	3373	3373					0.011271917519479757
ASPKLELHL	9	Unmodified	_ASPKLELHL_					0	0	0			REV__ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant	REV__ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342712402344	3	336.53432	1006.58113	0.24136	8.1227E-05	-0.34376	-0.00011569	-0.1024	-3.446E-05	336.5341617419655	25.844	0.61185	25.844	25.55	26.162	0					33	17	2	0	0	0	0.61124	1	7816	7816		27.882	7.8855	1	122740	+		3321	12072	1991	2001	3374	3374					0.0781033333993264
ASPKPAGK	8	Unmodified	_ASPKPAGK_					0	0	0		ENSG00000196843|ENST00000357485|ARID5A;ARID5A|p.R213Gfs*55|1|0.21|ENSG00000196843|chr2:96551159-96551159|C/-|frameshift_variant	ENSG00000196843|ENST00000357485|ARID5A	ENSG00000196843|ENST00000357485|ARID5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.22430419921875	2	378.224146	754.433738	0.22389	8.4681E-05	0.10543	3.9875E-05	0.32932	0.00012456	378.22422747313857	22.599	0.1384	22.599	22.548	22.687	0					5	3	2	0	0	0	0.63077	1	7376	7376		44.117	1.6423	1	325750			3322	7398	1992	2002	3375	3375					0.046698615258037535
ASPLTDEEAQ	10	Unmodified	_ASPLTDEEAQ_					0	0	0			REV__nc|ENSG00000196547|P49641-1|MAN2A2	REV__nc|ENSG00000196547|P49641-1|MAN2A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.743896484375	2	530.743293	1059.47203	0.2875	0.00015259	0.54702	0.00029033	0.83452	0.00044291	530.7438083349954	24.882	0.21298	24.882	24.778	24.991	0					13	4	4	0	0	0	0.34667	1	8749	8749		62.107	10.772	1	1255600	+		3323	17267	1993	2003	3376	3376					-0.0553234214087297
ASPQGAVTPQ	10	Unmodified	_ASPQGAVTPQ_					0	0	0			REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.24578857421875	2	478.245806	954.47706	-0.28426	-0.00013595	0.27647	0.00013222	-0.0077929	-3.7269E-06	478.24588077247165	13.667	1.252	13.667	13.482	14.734	0					53	32	3	0	0	0	0.52275	1	3312	3312		42.864	0	1	531500	+		3324	19386	1994	2004	3377	3377					-0.001999934875584586
ASPREKLS	8	Unmodified	_ASPREKLS_					0	0	0		ENSG00000131183|ENST00000324417|SLC34A1	ENSG00000131183|ENST00000324417|SLC34A1	ENSG00000131183|ENST00000324417|SLC34A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2516174316406	2	444.250892	886.48723	-1.1584	-0.00051462	1.3532	0.00060118	0.19485	8.6562E-05	444.2514648027521	25.698	0.17199	25.698	25.562	25.734	0					8	5	2	0	0	0	0.72524	1	8002	8002		30.318	1.1682	1	104160			3325	3706	1995	2005	3378	3378					0.03944614237661881
ASQAVWFS	8	Unmodified	_ASQAVWFS_					0	0	0		ENST00000413030.6_1_2:64478255-64478417:+|nuORF	ENST00000413030.6_1_2:64478255-64478417:+|nuORF	ENST00000413030.6_1_2:64478255-64478417:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.21929931640625	2	448.21906	894.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.232	1	45.232	44.732	45.732	0								0	0	0	1.7419	1	17523	17523		35.618	2.1027	1				3326	9327	1996	2006	3379	3379					-0.027867461994333098
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(140)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.7609558105469	2	510.760766	1019.50698	-0.12204	-6.2334E-05	-0.010475	-5.3501E-06	-0.13252	-6.7684E-05	510.7609073724682	22.354	0.22994	22.354	22.24	22.47	0					19	6	4	0	0	0	0.010125	1	6293	6293		142.36	23.618	1	1183300			3327	7427	1997	2007	3380	3380	315				-0.001993778138853486
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(140)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7610168457031	2	510.760766	1019.50698	-0.0064262	-3.2823E-06	-0.065137	-3.3269E-05	-0.071563	-3.6552E-05	510.760795553707	22.684	0.38139	22.684	22.548	22.93	0					25	9	3	0	0	0	0.010919	1	7390	7390		139.38	32.375	1	6546000			3328	7427	1997	2007	3381	3381	315				-0.001993778138853486
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(110)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.76080322265625	2	510.760766	1019.50698	-0.4136	-0.00021125	0.0084099	4.2955E-06	-0.40519	-0.00020695	510.7610355113536	22.366	0.2499	22.366	22.261	22.511	0					19	7	3	0	0	0	0.057264	1	6557	6557		106.88	11.065	1	805710			3329	7427	1997	2007	3382	3382	315				-0.001993778138853486
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(60)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.760498046875	2	510.760766	1019.50698	-0.27002	-0.00013791	0.43221	0.00022076	0.1622	8.2845E-05	510.76086276219644	22.385	0.15427	22.385	22.281	22.435	0					9	4	3	0	0	0	0.36647	1	6570	6570		59.931	10.395	1	218450			3330	7427	1997	2007	3383	3383	315				-0.001993778138853486
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(170)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7606201171875	2	510.760766	1019.50698	1.2108	0.00061845	-1.8205	-0.00092984	-0.60965	-0.00031139	510.76007720697027	22.557	0.56019	22.557	22.4	22.961	0					31	11	6	0	0	0	0.0043426	1	7662	7662		167.93	63.876	1	5755700			3331	7427	1997	2007	3384	3384	315				-0.001993778138853486
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(58)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.7608337402344	2	510.760766	1019.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.456	1	22.456	21.956	22.956	0								0	0	0	0.2486	1	6692	6692		58.246	8.7102	1				3332	7427	1997	2007	3385	3385	315				-0.001993778138853486
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(120)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.76092529296875	2	510.760766	1019.50698	-1.7815	-0.00090992	1.546	0.00078964	-0.23549	-0.00012028	510.76170793685577	22.449	0.28385	22.449	22.321	22.605	0					18	6	4	0	0	0	0.03057	1	6680	6680		117.71	19.124	1	864880			3333	7427	1997	2007	3386	3386	315				-0.001993778138853486
ASQCGSLIGK	10	Carbamidomethyl (C)	_ASQC(Carbamidomethyl (C))GSLIGK_	ASQC(1)GSLIGK		ASQC(100)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7608947753906	2	510.760766	1019.50698	1.3842	0.00070698	-2.1327	-0.0010893	-0.74852	-0.00038231	510.7600262887455	22.581	0.41896	22.581	22.37	22.789	0					20	8	4	0	0	0	0.071575	1	7542	7542		102.06	16.901	1	1600400			3334	7427	1997	2007	3387	3387	315				-0.001993778138853486
ASQCGSLIGK	10	Unmodified	_ASQCGSLIGK_					0	0	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.25	2	482.250034	962.485516	-0.55972	-0.00026992	3.8648	0.0018638	3.3051	0.0015939	482.2519126835525	25.333	0.31962	25.333	25.122	25.442	0					11	6	2	0	0	0	0.21778	1	8939	8939		77.288	7.6601	1	381680			3335	7427	1997	2008	3388	3388					0.0027723715739966792
ASQDIIPQLK	10	Unmodified	_ASQDIIPQLK_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.8743286132812	2	556.819138	1111.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.458	1	37.458	36.958	37.958	0								0	0	0	0.37293	1	12266	12266		38.754	2.3069	1				3336	1883	1998	2009	3389	3389					0.07237683677522
ASQEGTIQK	9	Unmodified	_ASQEGTIQK_					0	0	0		nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16;nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16	nc|ENSG00000172349|Q14005-2|IL16	nc|ENSG00000172349|Q14005-2|IL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2510070800781	2	481.251089	960.487624	-1.3529	-0.00065109	1.1005	0.00052961	-0.25242	-0.00012148	481.2517059025818	15.181	0.11144	15.181	15.135	15.246	0					8	4	2	0	0	0	0.032181	1	3414	3414		106.88	34.001	1	85903			3337	6358	1999	2010	3390	3390					0.005799891668630153
ASQEGTIQK	9	Unmodified	_ASQEGTIQK_					0	0	0		nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16;nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16	nc|ENSG00000172349|Q14005-2|IL16	nc|ENSG00000172349|Q14005-2|IL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2509765625	2	481.251089	960.487624	0.68458	0.00032946	-1.1055	-0.00053205	-0.42096	-0.00020259	481.2509374945478	15.425	0.50962	15.425	15.37	15.88	0					20	10	3	0	0	0	0.0093724	1	4225	4225		142.36	47.952	1	1040100			3338	6358	1999	2010	3391	3391					0.005799891668630153
ASQEGTIQK	9	Unmodified	_ASQEGTIQK_					0	0	0		nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16;nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16	nc|ENSG00000172349|Q14005-2|IL16	nc|ENSG00000172349|Q14005-2|IL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2515869140625	2	481.251089	960.487624	-2.9231	-0.0014067	3.1421	0.0015121	0.21903	0.00010541	481.25264304165773	15.234	0.11616	15.234	15.149	15.265	0					7	4	2	0	0	0	0.082776	1	3361	3361		83.647	11.77	1	78569			3339	6358	1999	2010	3392	3392					0.005799891668630153
ASQEGTIQK	9	Unmodified	_ASQEGTIQK_					0	0	0		nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16;nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16	nc|ENSG00000172349|Q14005-2|IL16	nc|ENSG00000172349|Q14005-2|IL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2510070800781	2	481.251089	960.487624	0.91534	0.00044051	-1.5556	-0.00074862	-0.64024	-0.00030811	481.25073429484854	15.418	0.49997	15.418	15.297	15.797	0					16	10	3	0	0	0	0.10506	1	4067	4067		78.264	14.057	1	564150			3340	6358	1999	2010	3393	3393					0.005799891668630153
ASQEGTIQK	9	Unmodified	_ASQEGTIQK_					0	0	0		nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16;nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16	nc|ENSG00000172349|Q14005-2|IL16	nc|ENSG00000172349|Q14005-2|IL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2508850097656	2	481.251089	960.487624	2.3477	0.0011298	-2.4958	-0.0012011	-0.14807	-7.1259E-05	481.24987415574776	15.389	0.20049	15.389	15.28	15.481	0					8	4	2	0	0	0	0.0093724	1	4056	4056		142.36	32.883	1	935350			3341	6358	1999	2010	3394	3394					0.005799891668630153
ASQEIAEKALK	11	Unmodified	_ASQEIAEKALK_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH2|p.L296Yfs*20|1|0.57|ENSG00000126945|chrX:101412869-101412869|G/-|frameshift_variant;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.3349609375	2	594.335153	1186.65575	0.18676	0.000111	0.18476	0.00010981	0.37151	0.0002208	594.3351947813229	22.289	0.074863	22.289	22.217	22.291	0					4	2	2	0	0	0	0.35653	1	6527	6527		54.343	21.593	1	89722			3342	6142	2000	2011	3395	3395					0.06989051360642407
ASQEIAEKALK	11	Unmodified	_ASQEIAEKALK_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH2|p.L296Yfs*20|1|0.57|ENSG00000126945|chrX:101412869-101412869|G/-|frameshift_variant;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.3356323242188	2	594.335153	1186.65575	0.027041	1.6071E-05	0.50818	0.00030203	0.53522	0.0003181	594.3356285247482	22.443	0.16711	22.443	22.334	22.501	0					7	3	3	0	0	0	5.2658E-05	1	7607	7607		167.93	74.336	1	658770			3343	6142	2000	2011	3396	3396					0.06989051360642407
ASQEIAEKALK	11	Unmodified	_ASQEIAEKALK_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH2|p.L296Yfs*20|1|0.57|ENSG00000126945|chrX:101412869-101412869|G/-|frameshift_variant;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	396.55908203125	3	396.559194	1186.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.372	1	22.372	21.872	22.872	0								0	0	0	0.2788	1	6653	6653		55.084	7.1244	1				3344	6142	2000	2011	3397	3397					0.06989051360642407
ASQEIAEKALK	11	Unmodified	_ASQEIAEKALK_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH2|p.L296Yfs*20|1|0.57|ENSG00000126945|chrX:101412869-101412869|G/-|frameshift_variant;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.55926513671875	3	396.559194	1186.65575	-0.63954	-0.00025362	0.68049	0.00026985	0.040949	1.6239E-05	396.5594550718369	22.447	0.21869	22.447	22.337	22.555	0					11	4	4	0	0	0	0.25906	1	7477	7477		67.214	3.7878	1	568740			3345	6142	2000	2011	3398	3398					0.06989051360642407
ASQELWLNH	9	Unmodified	_ASQELWLNH_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2725830078125	2	549.272355	1096.53016	1.2624	0.00069343	-0.79213	-0.00043509	0.47032	0.00025834	549.2717017757774	36.154	0.30371	36.154	36.055	36.359	0					30	15	3	0	0	0	0.04067	1	11851	11851		98.582	7.9811	1	305490			3346	2393	2001	2012	3399	3399					-0.01424615704900134
ASQELWLNH	9	Unmodified	_ASQELWLNH_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2723999023438	2	549.272355	1096.53016	0.51681	0.00028387	-0.097627	-5.3624E-05	0.41919	0.00023025	549.2720667176245	36.455	0.44373	36.455	36.34	36.784	0					30	12	3	0	0	0	0.014413	1	13721	13721		131.62	43.92	1	1603500			3347	2393	2001	2012	3400	3400					-0.01424615704900134
ASQELWLNH	9	Unmodified	_ASQELWLNH_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2730712890625	2	549.272355	1096.53016	1.7384	0.00095483	-0.85508	-0.00046967	0.88328	0.00048516	549.2718815996916	36.425	0.53434	36.425	36.242	36.777	0					38	15	3	0	0	0	0.012936	1	14160	14160		134.77	30.709	1	3970400			3348	2393	2001	2012	3401	3401					-0.01424615704900134
ASQELWLNH	9	Unmodified	_ASQELWLNH_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2725830078125	2	549.272355	1096.53016	1.8371	0.001009	-1.027	-0.00056409	0.8101	0.00044496	549.2717700166545	36.371	0.61169	36.371	36.166	36.778	0					26	12	3	0	0	0	0.02429	1	14139	14139		114.89	27.198	1	2233300			3349	2393	2001	2012	3402	3402					-0.01424615704900134
ASQEQPAQP	9	Unmodified	_ASQEQPAQP_					0	0	0		CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant;CHD8|p.V1538*|1|0.4|ENSG00000100888|chr14:21400267-21400267|T/-|frameshift_variant;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.I351Nfs*70|1|0.25|ENSG00000100888|chr14:21429127-21429128|-/T|frameshift_variant	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.22802734375	2	478.227613	954.440674	-0.11666	-5.5789E-05	2.0004	0.00095662	1.8837	0.00090083	478.22847920729146	24.773	0.51309	24.773	24.511	25.024	0					21	10	3	0	0	0	0.42902	1	8675	8675		39.253	1.4413	1	650320			3350	507	2002	2013	3403	3403					-0.03836870384282065
ASQETVATILK	11	Unmodified	_ASQETVATILK_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.830078125	2	580.829703	1159.64485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.375	1	34.375	33.875	34.875	0								0	0	0	0.37939	1	11591	11591		41.08	4.6333	1				3351	3820	2003	2014	3404	3404					0.07141648986385007
ASQGEVVRK	9	Unmodified	_ASQGEVVRK_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2747802734375	2	487.274898	972.535243	-0.00081893	-3.9904E-07	-0.61205	-0.00029824	-0.61287	-0.00029864	487.27463286725947	13.892	0.076409	13.892	13.844	13.92	0					6	3	2	0	0	0	0.40353	1	2781	2781		41.427	7.505	1	92767			3352	4092	2004	2015	3405	3405					0.04787688157705361
ASQGEVVRK	9	Unmodified	_ASQGEVVRK_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.27471923828125	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.202	1	14.202	13.702	14.702	0								0	0	0	0.077333	1	3410	3410		78.264	11.835	1				3353	4092	2004	2015	3406	3406					0.04787688157705361
ASQGEVVRK	9	Unmodified	_ASQGEVVRK_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2750549316406	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.966	1	13.966	13.466	14.466	0								0	0	0	0.23445	1	2877	2877		45.972	0	1				3354	4092	2004	2015	3407	3407					0.04787688157705361
ASQHSGALFK	10	Unmodified	_ASQHSGALFK_					0	0	0		RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2745361328125	2	523.274898	1044.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.798	1	19.798	19.298	20.298	0								0	0	0	0.3998	1	5191	5191		30.569	2.3146	1				3355	6408	2005	2016	3408	3408					0.014756881577113745
ASQIPSSRQ	9	Unmodified	_ASQIPSSRQ_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.27484130859375	2	487.256705	972.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.188	1	14.188	13.688	14.688	0								0	0	0	0.29356	1	3625	3625		36.447	3.6343	1				3356	5357	2006	2017	3409	3409					0.011508112610044918
ASQKALKEK	9	Unmodified	_ASQKALKEK_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.8010559082031	2	501.800749	1001.58694	-0.043637	-2.1897E-05	-0.43688	-0.00021923	-0.48052	-0.00024112	501.80078828333126	12.008	0.054003	12.008	11.973	12.027	0					5	3	2	0	0	0	0.22837	1	2268	2268		58.23	10.573	1	58450			3357	3702	2007	2018	3410	3410					0.08621431851611305
ASQKALKEK	9	Unmodified	_ASQKALKEK_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.800537109375	2	501.800749	1001.58694	-0.087235	-4.3775E-05	-0.43842	-0.00022	-0.52565	-0.00026377	501.80054211971606	12.212	0.33183	12.212	12.139	12.471	0					21	11	4	0	0	0	0.021035	1	2514	2514		120.27	24.239	1	3399000			3358	3702	2007	2018	3411	3411					0.08621431851611305
ASQKALKEK	9	Unmodified	_ASQKALKEK_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.8695068359375	3	334.869591	1001.58694	0.51874	0.00017371	-0.56429	-0.00018897	-0.045554	-1.5255E-05	334.8693340309422	12.212	0.10268	12.212	12.139	12.242	0					8	3	3	0	0	0	0.18416	1	2526	2526		89.029	27.338	1	874700			3359	3702	2007	2018	3412	3412					0.08621431851611305
ASQKALKEK	9	Unmodified	_ASQKALKEK_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.8005676269531	2	501.800749	1001.58694	-0.99102	-0.00049729	0.74495	0.00037381	-0.24607	-0.00012348	501.80121638050554	11.969	0.08677	11.969	11.907	11.994	0					11	5	3	0	0	0	0.040209	1	2344	2344		99.013	13.151	1	195110			3360	3702	2007	2018	3413	3413					0.08621431851611305
ASQKALKEK	9	Unmodified	_ASQKALKEK_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8005676269531	2	501.800749	1001.58694	-0.554	-0.000278	0.2474	0.00012415	-0.30659	-0.00015385	501.8008511134529	12.215	0.30125	12.215	12.168	12.469	0					14	7	4	0	0	0	0.0021879	1	2707	2707		173.39	71.791	1	1336500			3361	3702	2007	2018	3414	3414					0.08621431851611305
ASQKALKEK	9	Unmodified	_ASQKALKEK_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8006591796875	2	501.800749	1001.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.186	1	12.186	11.686	12.686	0								0	0	0	0.051298	1	2536	2536		85.862	9.0877	1				3362	3702	2007	2018	3415	3415					0.08621431851611305
ASQKNFKAK	9	Unmodified	_ASQKNFKAK_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.29315185546875	2	511.293091	1020.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.348	1	12.348	11.848	12.848	0								0	0	0	0.23445	1	2345	2345		45.972	1.8554	1				3363	6622	2008	2019	3416	3416					0.06216565054421608
ASQKNFKAK	9	Unmodified	_ASQKNFKAK_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2928161621094	2	511.293091	1020.57163	-0.0023604	-1.2069E-06	-0.52417	-0.00026801	-0.52653	-0.00026921	511.2927668855799	12.601	0.19063	12.601	12.528	12.719	0					13	6	3	0	0	0	0.048471	1	2677	2677		95.815	44.48	1	1077800			3364	6622	2008	2019	3417	3417					0.06216565054421608
ASQKNFKAK	9	Unmodified	_ASQKNFKAK_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.1977233886719	3	341.197819	1020.57163	1.4756	0.00050348	-1.6983	-0.00057946	-0.22267	-7.5974E-05	341.1971645066566	12.593	0.1344	12.593	12.548	12.683	0					5	3	2	0	0	0	0.50858	1	2883	2883		46.457	11.279	1	310830			3365	6622	2008	2019	3418	3418					0.06216565054421608
ASQKNFKAK	9	Unmodified	_ASQKNFKAK_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.29266357421875	2	511.293091	1020.57163	-0.43759	-0.00022374	0.1119	5.7214E-05	-0.32569	-0.00016652	511.29305610573346	12.584	0.17316	12.584	12.537	12.71	0					9	4	3	0	0	0	0.023928	1	2877	2877		115.49	45.866	1	449310			3366	6622	2008	2019	3419	3419					0.06216565054421608
ASQKNFKAK	9	Unmodified	_ASQKNFKAK_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2935485839844	2	511.293091	1020.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.339	1	12.339	11.839	12.839	0								0	0	0	0.23445	1	2387	2387		45.972	16.823	1				3367	6622	2008	2019	3420	3420					0.06216565054421608
ASQKNFKAK	9	Unmodified	_ASQKNFKAK_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.1977844238281	3	341.197819	1020.57163	1.5574	0.00053138	-2.0771	-0.00070871	-0.51973	-0.00017733	341.1969329852069	12.574	0.098838	12.574	12.526	12.625	0					4	2	2	0	0	0	0.35021	1	2720	2720		61.691	15.234	1	202400			3368	6622	2008	2019	3421	3421					0.06216565054421608
ASQKTSAI	8	Unmodified	_ASQKTSAI_					0	0	0		ENST00000486875.1_1_20:5107738-5156066:+|nuORF	ENST00000486875.1_1_20:5107738-5156066:+|nuORF	ENST00000486875.1_1_20:5107738-5156066:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.2240905761719	2	403.224342	804.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.803	1	18.803	18.303	19.303	0								0	0	0	1.7419	1	5566	5566		33.516	0.70317	1				3369	10028	2009	2020	3422	3422					0.024092364550028833
ASQKVTISK	9	Unmodified	_ASQKVTISK_					0	0	0		ENST00000369151.7_1_10:120445350-120445566:-|nuORF;CACUL1|p.Y368Tfs*100|1|0.52|ENSG00000151893|chr10:118686137-118686137|C/-|frameshift_variant	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.2872009277344	2	481.287474	960.560395	0.039977	1.924E-05	0.058516	2.8163E-05	0.098493	4.7404E-05	481.28718267426837	16.09	0.052763	16.09	16.057	16.109	0					4	2	2	0	0	0	0.22823	1	3609	3609		58.246	0.016323	1	33538			3370	354	2010	2021	3423	3423					0.07853742960287491
ASQKVTISK	9	Unmodified	_ASQKVTISK_					0	0	0		ENST00000369151.7_1_10:120445350-120445566:-|nuORF;CACUL1|p.Y368Tfs*100|1|0.52|ENSG00000151893|chr10:118686137-118686137|C/-|frameshift_variant	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.287353515625	2	481.287474	960.560395	0.40535	0.00019509	-0.55886	-0.00026897	-0.15352	-7.3885E-05	481.28711178955484	16.4	0.1045	16.4	16.334	16.438	0					4	2	2	0	0	0	0.021035	1	4437	4437		120.27	21.26	1	129650			3371	354	2010	2021	3424	3424					0.07853742960287491
ASQKVTISK	9	Unmodified	_ASQKVTISK_					0	0	0		ENST00000369151.7_1_10:120445350-120445566:-|nuORF;CACUL1|p.Y368Tfs*100|1|0.52|ENSG00000151893|chr10:118686137-118686137|C/-|frameshift_variant	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.28765869140625	2	481.287474	960.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.131	1	16.131	15.631	16.631	0								0	0	0	0.1347	1	3809	3809		63.426	10.338	1				3372	354	2010	2021	3425	3425					0.07853742960287491
ASQKVTISK	9	Unmodified	_ASQKVTISK_					0	0	0		ENST00000369151.7_1_10:120445350-120445566:-|nuORF;CACUL1|p.Y368Tfs*100|1|0.52|ENSG00000151893|chr10:118686137-118686137|C/-|frameshift_variant	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.28704833984375	2	481.287474	960.560395	-0.10707	-5.1533E-05	-0.47007	-0.00022624	-0.57714	-0.00027777	481.2871648489942	16.339	0.11591	16.339	16.28	16.396	0					4	2	2	0	0	0	0.0034376	1	4659	4659		166.07	38.609	1	366290			3373	354	2010	2021	3426	3426					0.07853742960287491
ASQKVTISK	9	Unmodified	_ASQKVTISK_					0	0	0		ENST00000369151.7_1_10:120445350-120445566:-|nuORF;CACUL1|p.Y368Tfs*100|1|0.52|ENSG00000151893|chr10:118686137-118686137|C/-|frameshift_variant	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	ENST00000369151.7_1_10:120445350-120445566:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.28814697265625	2	481.287474	960.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.156	1	16.156	15.656	16.656	0								0	0	0	0.2258	1	3769	3769		47.228	4.3634	1				3374	354	2010	2021	3427	3427					0.07853742960287491
ASQKVYAMK	9	Unmodified	_ASQKVYAMK_					0	0	0		ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant;ENSG00000134318|ENST00000315872|ROCK2;ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.275390625	2	513.276052	1024.53755	1.2317	0.00063222	-4.4498	-0.002284	-3.2181	-0.0016518	513.2733849381922	18.357	0.1971	18.357	18.286	18.483	0					11	8	2	0	0	0	0.24334	1	4559	4559		56.434	8.7765	1	111960			3375	3913	2011	2022	3428	3428					0.02626400571148224
ASQKVYAMK	9	Unmodified	_ASQKVYAMK_					0	0	0		ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant;ENSG00000134318|ENST00000315872|ROCK2;ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2759399414062	2	513.276052	1024.53755	-0.24854	-0.00012757	0.14863	7.6291E-05	-0.099906	-5.128E-05	513.2759257025768	18.374	0.086166	18.374	18.332	18.418	0					8	3	3	0	0	0	0.44593	1	4786	4786		37.812	5.8567	1	122930			3376	3913	2011	2022	3429	3429					0.02626400571148224
ASQKVYAMK	9	Unmodified	_ASQKVYAMK_					0	0	0		ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant;ENSG00000134318|ENST00000315872|ROCK2;ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2760009765625	2	513.276052	1024.53755	1.2984	0.00066645	-1.5343	-0.00078754	-0.23592	-0.00012109	513.2754073859925	18.603	0.21774	18.603	18.493	18.711	0					8	4	3	0	0	0	0.3269	1	5749	5749		47.96	8.7067	1	1092100			3377	3913	2011	2022	3430	3430					0.02626400571148224
ASQLDCNFLK	10	Unmodified	_ASQLDCNFLK_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6;ENST00000458604.6_1_14:53173986-53184887:+|nuORF	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7821655273438	2	569.781699	1137.54884	1.6242	0.00092542	0.25699	0.00014643	1.8811	0.0010718	569.7806437836759	40.64	0.0924	40.64	40.578	40.67	0					4	2	2	0	0	0	0.39827	1	16156	16156		56.434	3.4971	1	53826			3378	2038	2012	2023	3431	3431					-0.014428221253865559
ASQLGIFISK	10	Unmodified	_ASQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.3112182617188	2	532.310949	1062.60735	0.36376	0.00019363	0.69839	0.00037176	1.0622	0.0005654	532.3114445490872	40.505	0.16757	40.505	40.417	40.584	0					18	10	2	0	0	0	0.60147	1	13074	13074		34.087	6.005	1	60244			3379	3174	2013	2024	3432	3432					0.07854602511406483
ASQLGIFISK	10	Unmodified	_ASQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.31103515625	2	532.310949	1062.60735	0.12496	6.6518E-05	-0.0013926	-7.4131E-07	0.12357	6.5776E-05	532.3108421829322	40.798	0.24975	40.798	40.735	40.985	0					17	7	3	0	0	0	0.01242	1	15546	15546		133.75	37.087	1	441400			3380	3174	2013	2024	3433	3433					0.07854602511406483
ASQLGIFISK	10	Unmodified	_ASQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.3115234375	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.581	1	40.581	40.081	41.081	0								0	0	0	0.38024	1	14407	14407		36.528	9.835	1				3381	3174	2013	2024	3434	3434					0.07854602511406483
ASQLGIFISK	10	Unmodified	_ASQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.3109130859375	2	532.310949	1062.60735	3.4095	0.0018149	-2.3388	-0.001245	1.0707	0.00056993	532.3094610530709	40.741	0.31966	40.741	40.606	40.926	0					9	5	3	0	0	0	0.13359	1	16189	16189		89.561	34.838	1	560290			3382	3174	2013	2024	3435	3435					0.07854602511406483
ASQLRHEGNR	10	Unmodified	_ASQLRHEGNR_					0	0	0		nc|ENSG00000175556|Q496Y0-3|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3	nc|ENSG00000175556|Q496Y0-3|LONRF3	nc|ENSG00000175556|Q496Y0-3|LONRF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.8715515136719	3	389.870765	1166.59047	-0.69864	-0.00027238	2.8037	0.0010931	2.105	0.00082069	389.8719075689372	23.142	0.1166	23.142	23.084	23.201	0					6	2	3	0	0	0	0.65051	1	7817	7817		28.081	2.0181	1	277550			3383	6565	2014	2025	3436	3436					0.013834946781798863
ASQLVGIEK	9	Unmodified	_ASQLVGIEK_					0	0	0		ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.77392578125	2	472.7742	943.533846	-0.026047	-1.2314E-05	0.25818	0.00012206	0.23213	0.00010974	472.7742532872193	26.946	0.33813	26.946	26.85	27.188	0					18	11	3	0	0	0	0.14673	1	8230	8230		68.626	15.689	1	652960			3384	1577	2015	2026	3437	3437					0.059820540689429436
ASQLVGIEK	9	Unmodified	_ASQLVGIEK_					0	0	0		ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.77392578125	2	472.7742	943.533846	-0.5623	-0.00026584	-0.97103	-0.00045908	-1.5333	-0.00072492	472.77413652725477	27.205	0.50364	27.205	26.956	27.46	0					18	12	2	0	0	0	0.07561	1	9485	9485		86.189	10.019	1	432980			3385	1577	2015	2026	3438	3438					0.059820540689429436
ASQLVGIEK	9	Unmodified	_ASQLVGIEK_					0	0	0		ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7738342285156	2	472.7742	943.533846	-1.5006	-0.00070944	0.90431	0.00042754	-0.59627	-0.0002819	472.7746198481151	26.962	0.33901	26.962	26.866	27.205	0					32	11	4	0	0	0	0.033932	1	8518	8518		105.17	16.988	1	952150			3386	1577	2015	2026	3439	3439					0.059820540689429436
ASQLVGIEK	9	Unmodified	_ASQLVGIEK_					0	0	0		ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.77386474609375	2	472.7742	943.533846	0.59254	0.00028014	-1.2632	-0.00059723	-0.6707	-0.00031709	472.7736271040261	27.211	1.4306	27.211	26.71	28.141	0					81	29	5	0	0	0	0.0025398	1	9819	9819		171.33	43.869	1	7536600			3387	1577	2015	2026	3440	3440					0.059820540689429436
ASQLVGIEK	9	Unmodified	_ASQLVGIEK_					0	0	0		ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7736511230469	2	472.7742	943.533846	-0.52229	-0.00024693	0.14999	7.0912E-05	-0.3723	-0.00017602	472.77420706596024	27.014	0.31532	27.014	26.903	27.219	0					21	8	4	0	0	0	0.049407	1	8756	8756		95.483	19.313	1	865070			3388	1577	2015	2026	3441	3441					0.059820540689429436
ASQLVGIEK	9	Unmodified	_ASQLVGIEK_					0	0	0		ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	ENSG00000077152|ENST00000646651|UBE2T	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7738342285156	2	472.7742	943.533846	0.63593	0.00030065	-1.2639	-0.00059752	-0.62793	-0.00029687	472.77361856696115	27.148	1.1736	27.148	26.836	28.01	0					57	23	5	0	0	0	0.0073977	1	9691	9691		147.73	43.675	1	5899500			3389	1577	2015	2026	3442	3442					0.059820540689429436
ASQLVRHVV	9	Unmodified	_ASQLVRHVV_					0	0	0			REV__nc|ENSG00000111481|P61923-5|COPZ1	REV__nc|ENSG00000111481|P61923-5|COPZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.8683166503906	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.661	1	54.661	54.161	55.161	0								0	0	0	0.36609	1	19788	19788		20.947	3.4789	1		+		3390	20974	2016	2027	3443	3443					0.0841227129131994
ASQNAQDLIGI	11	Unmodified	_ASQNAQDLIGI_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.1995544433594	3	377.199777	1128.5775	0.80772	0.00030467	-1.9627	-0.00074035	-1.155	-0.00043567	377.1990265458276	26.889	0.17659	26.889	26.805	26.982	0					8	4	3	0	0	0	0.64562	1	9341	9341		50.034	19.716	1	523630			3391	2625	2017	2028	3444	3444					0.01835618775430703
ASQPGSTPGRI	11	Unmodified	_ASQPGSTPGRI_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7853393554688	2	535.783087	1069.55162	3.3597	0.0018001	0.76261	0.00040859	4.1223	0.0022087	535.783515824269	22.113	0.51741	22.113	22.004	22.521	0					18	10	3	0	0	0	0.32407	1	7316	7316		59.931	1.7009	1	1527900	+		3392	14016	2018	2029	3445	3445					0.01962769323813518
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.29345703125	2	530.293288	1058.57202	0.43257	0.00022939	0.42834	0.00022714	0.8609	0.00045653	530.2932793405553	19.49	0.14133	19.49	19.425	19.566	0					10	4	3	0	0	0	0.080628	1	5042	5042		99.013	3.1978	1	339280			3393	9457	2019	2030	3446	3446					0.045079399835913136
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2935180664062	2	530.293288	1058.57202	0.11603	6.1529E-05	-0.1582	-8.3891E-05	-0.042168	-2.2362E-05	530.2933047605416	19.82	0.23592	19.82	19.735	19.971	0					15	5	5	0	0	0	0.00048463	1	6053	6053		187.5	66.636	1	1535500			3394	9457	2019	2030	3447	3447					0.045079399835913136
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2933959960938	2	530.293288	1058.57202	-0.033004	-1.7502E-05	0.47715	0.00025303	0.44415	0.00023553	530.2934164563464	19.521	0.15141	19.521	19.444	19.596	0					7	4	2	0	0	0	0.06456	1	5314	5314		104.42	21.673	1	209020			3395	9457	2019	2030	3448	3448					0.045079399835913136
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.294189453125	2	530.293288	1058.57202	0.39517	0.00020956	0.78788	0.00041781	1.183	0.00062736	530.2935519841903	19.513	0.1225	19.513	19.432	19.555	0					5	3	2	0	0	0	0.41384	1	5304	5304		54.722	1.3709	1	80102			3396	9457	2019	2030	3449	3449					0.045079399835913136
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2938842773438	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.746	1	19.746	19.246	20.246	0								0	0	0	8.4628E-10	1	6294	6294		200.56	64.295	1				3397	9457	2019	2030	3450	3450					0.045079399835913136
ASQSKDGEKK	10	Unmodified	_ASQSKDGEKK_					0	0	0			REV__ENST00000392442.6_1_12:122990076-122998315:-|nuORF	REV__ENST00000392442.6_1_12:122990076-122998315:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.8564453125	3	359.85601	1076.5462	0.29639	0.00010666	0.91483	0.00032921	1.2112	0.00043586	359.85631625302784	17.509	0.21869	17.509	17.449	17.668	0					5	4	2	0	0	0	0.5276	1	5224	5224		42.338	5.179	1	169270	+		3398	13952	2020	2031	3451	3451					0.010990457413299737
ASRFKQRL	8	Unmodified	_ASRFKQRL_					0	0	0		ENST00000520356.5_2_8:135490286-135490631:-|nuORF	ENST00000520356.5_2_8:135490286-135490631:-|nuORF	ENST00000520356.5_2_8:135490286-135490631:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.8698425292969	3	335.869926	1004.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.155	1	19.155	18.655	19.655	0								0	0	0	1.7419	1	5869	5869		44.117	5.3107	1				3399	10298	2021	2032	3452	3452					0.08583691011187966
ASRGRSFKQ	9	Unmodified	_ASRGRSFKQ_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;ENST00000603552.1_1_9:20882043-20885259:+|nuORF	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7857666015625	2	518.785964	1035.55738	0.50468	0.00026182	-0.58514	-0.00030356	-0.080456	-4.174E-05	518.7855158971993	12.898	0.12167	12.898	12.844	12.965	0					9	6	2	0	0	0	0.14578	1	2483	2483		52.937	0	1	126890			3400	7249	2022	2033	3453	3453					0.041019126261289784
ASRHIKPLS	9	Unmodified	_ASRHIKPLS_					0	0	0			REV__ENSG00000157764|ENST00000646891|BRAF	REV__ENSG00000157764|ENST00000646891|BRAF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.8688049316406	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.771	1	28.771	28.271	29.271	0								0	0	0	0.37517	1	9013	9013		18.262	2.2553	1		+		3401	15667	2023	2034	3454	3454					0.0841227129130857
ASRIMKDLK	9	Unmodified	_ASRIMKDLK_					0	0	0			REV__IFIT1|p.K336Sfs*9|1|0.6|ENSG00000185745|chr10:89403276-89403276|A/-|frameshift_variant	REV__IFIT1|p.K336Sfs*9|1|0.6|ENSG00000185745|chr10:89403276-89403276|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3125610351562	2	531.310426	1060.6063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.594	1	30.594	30.094	31.094	0								0	0	0	0.37517	1	10066	10066		18.262	0.89712	1		+		3402	17043	2024	2035	3455	3455					0.07842064870851573
ASRLPVHL	8	Unmodified	_ASRLPVHL_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.77044677734375	2	446.771794	891.529036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.712	1	38.712	38.212	39.212	0								0	0	0	1.7419	1	13835	13835		29.15	0	1		+		3403	16111	2025	2036	3456	3456					0.07893214716830244
ASRPHRKGV	9	Unmodified	_ASRPHRKGV_					0	0	0		ENST00000382038.6_1_5:34914962-34915626:-|nuORF	ENST00000382038.6_1_5:34914962-34915626:-|nuORF	ENST00000382038.6_1_5:34914962-34915626:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53448486328125	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.147	1	19.147	18.647	19.647	0								0	0	0	0.28164	1	6002	6002		54.776	15.523	1				3404	9120	2026	2037	3457	3457					0.07541922725658878
ASRPPARFKTG	11	Unmodified	_ASRPPARFKTG_					0	0	0			REV__ENSG00000204779|ENST00000377420|FOXD4L5	REV__ENSG00000204779|ENST00000377420|FOXD4L5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.5589294433594	3	396.55964	1186.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.273	1	22.273	21.773	22.773	0								0	0	0	0.43806	1	6271	6271		28.577	3.4507	1		+		3405	16992	2027	2038	3458	3458					0.07122730240052988
ASRPSKLAL	9	Unmodified	_ASRPSKLAL_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7895202636719	2	471.790184	941.565815	-0.39214	-0.00018501	-0.22385	-0.00010561	-0.61599	-0.00029062	471.79006534739113	20.533	0.14234	20.533	20.454	20.596	0					6	4	2	0	0	0	0.42902	1	5514	5514		39.253	2.0937	1	42364			3406	4732	2028	2039	3459	3459					0.0926946654275298
ASRSRRAK	8	Unmodified	_ASRSRRAK_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2821960449219	2	466.280849	930.547145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.997	1	12.997	12.497	13.497	0								0	0	0	1.7419	1	2858	2858		26.693	3.1702	1		+		3407	15549	2029	2040	3460	3460					0.07909349691556145
ASRSTVLAK	9	Unmodified	_ASRSTVLAK_					0	0	0			REV__ENSG00000185504|ENST00000327787|FAAP100	REV__ENSG00000185504|ENST00000327787|FAAP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.77923583984375	2	466.779816	931.545079	-1.153	-0.00053819	-0.20912	-9.7611E-05	-1.3621	-0.0006358	466.7796658712559	19.136	0.076614	19.136	19.076	19.152	0					4	2	2	0	0	0	0.36892	1	5125	5125		44.377	0.26039	1	63569	+		3408	17030	2030	2041	3461	3461					0.07656876163093784
ASRTLSNQFDQ	11	Unmodified	_ASRTLSNQFDQ_					0	0	0			REV__PIP4K2A|p.R141Dfs*19|1|0.27|ENSG00000150867|chr10:22591700-22591700|T/-|frameshift_variant	REV__PIP4K2A|p.R141Dfs*19|1|0.27|ENSG00000150867|chr10:22591700-22591700|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.8741455078125	3	422.873953	1265.60003	0.36937	0.0001562	0.63721	0.00026946	1.0066	0.00042566	422.8741447618385	18.453	0.14744	18.453	18.4	18.547	0					5	3	2	0	0	0	0.69983	1	5411	5411		27.644	0	1	81573	+		3409	15456	2031	2042	3462	3462					-0.022147818269331765
ASRTRSPPR	9	Unmodified	_ASRTRSPPR_					0	0	0			REV__ENST00000456357.6_1_7:97881701-97920552:+|nuORF	REV__ENST00000456357.6_1_7:97881701-97920552:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1977233886719	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.508	1	48.508	48.008	49.008	0								0	0	0	0.36056	1	19273	19273		22.58	5.1116	1		+		3410	19350	2032	2043	3463	3463					0.056053150004117924
ASRYCLVW	8	Unmodified	_ASRYCLVW_					0	0	0			REV__ENST00000488581.5_1_2:172944999-172945131:+|nuORF	REV__ENST00000488581.5_1_2:172944999-172945131:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.16937255859375	3	333.168984	996.485122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.402	1	31.402	30.902	31.902	0								0	0	0	1.7419	1	11837	11837		16.473	4.0403	1		+		3411	19694	2033	2044	3464	3464					-0.013261377718094991
ASSAALRAPP	10	Unmodified	_ASSAALRAPP_					0	0	0		ENST00000246024.6_1_20:8000232-8000430:-|nuORF	ENST00000246024.6_1_20:8000232-8000430:-|nuORF	ENST00000246024.6_1_20:8000232-8000430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7640380859375	2	470.764166	939.513779	-0.42713	-0.00020108	-0.090156	-4.2442E-05	-0.51729	-0.00024352	470.76408599013234	16.501	0.41856	16.501	16.403	16.821	0					39	14	5	0	0	0	0.12896	1	3757	3757		90.37	0	1	12529000			3412	8227	2034	2045	3465	3465					0.04160303128992382
ASSALFMAK	9	Unmodified	_ASSALFMAK_					0	0	0		GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant;ENSG00000125651|ENST00000394456|GTF2F1	GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant	GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2439880371094	2	463.244221	924.473888	0.64547	0.00029901	-1.4916	-0.00069099	-0.84617	-0.00039198	463.24352156859266	31.865	0.45769	31.865	31.613	32.07	0					22	11	3	0	0	0	0.16806	1	11669	11669		65.465	24.687	1	766650			3413	3425	2035	2046	3466	3466					0.00863040134061066
ASSALFMAK	9	Unmodified	_ASSALFMAK_					0	0	0		GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant;ENSG00000125651|ENST00000394456|GTF2F1	GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant	GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.24383544921875	2	463.244221	924.473888	-0.47583	-0.00022042	0.03544	1.6418E-05	-0.44039	-0.00020401	463.24419325676473	31.826	0.26584	31.826	31.718	31.984	0					13	5	3	0	0	0	0.42902	1	11974	11974		39.253	5.0803	1	437250			3414	3425	2035	2046	3467	3467					0.00863040134061066
ASSALFMAK	9	Unmodified	_ASSALFMAK_					0	0	0		GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant;ENSG00000125651|ENST00000394456|GTF2F1	GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant	GTF2F1|p.E356G|1|0.16|ENSG00000125651|chr19:6381147-6381147|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.243896484375	2	463.244221	924.473888	0.76125	0.00035265	-1.915	-0.00088712	-1.1538	-0.00053447	463.24352132309673	31.812	0.56297	31.812	31.454	32.017	0					21	11	4	0	0	0	0.22837	1	11968	11968		58.23	8.7884	1	842770			3415	3425	2035	2046	3468	3468					0.00863040134061066
ASSALSAIGL	10	Unmodified	_ASSALSAIGL_					0	0	0			REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.25299072265625	2	445.2531	888.491647	-0.1889	-8.4107E-05	0.63471	0.00028261	0.44581	0.0001985	445.2535349579542	27.43	0.31242	27.43	27.321	27.634	0					9	6	2	0	0	0	0.52707	1	9950	9950		42.396	3.1433	1	78095	+		3416	18854	2036	2047	3469	3469					0.04294078660552714
ASSAPPLTGK	10	Unmodified	_ASSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7583312988281	2	464.758549	927.502546	0.54455	0.00025308	-1.1155	-0.00051842	-0.57091	-0.00026534	464.75808658476825	20.315	0.47268	20.315	20.153	20.625	0					17	10	2	0	0	0	0.50287	1	6287	6287		45.022	6.2161	1	326790			3417	1972	2037	2048	3470	3470					0.03589481034839537
ASSAPPLTGK	10	Unmodified	_ASSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7583312988281	2	464.758549	927.502546	0.71116	0.00033052	-0.7085	-0.00032928	0.0026608	1.2366E-06	464.7582686366829	20.234	0.7196	20.234	19.825	20.544	0					19	14	2	0	0	0	0.54861	1	6384	6384		40.058	2.2467	1	386400			3418	1972	2037	2048	3471	3471					0.03589481034839537
ASSATQVHK	9	Unmodified	_ASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.24688720703125	2	464.745973	927.477394	-0.77652	-0.00036088	0.86331	0.00040122	0.086794	4.0337E-05	464.74638066615336	11.916	0.10374	11.916	11.863	11.967	0					14	6	3	0	0	0	0.27123	1	2329	2329		53.089	1.7535	1	297240			3419	8869	2038	2049	3472	3472					0.010754262322734576
ASSATQVHK	9	Unmodified	_ASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7456970214844	2	464.745973	927.477394	-2.3404	-0.0010877	2.7944	0.0012987	0.45408	0.00021103	464.74704914215073	11.893	0.052999	11.893	11.859	11.912	0					5	3	2	0	0	0	0.14578	1	2278	2278		68.846	20.931	1	64306			3420	8869	2038	2049	3473	3473					0.010754262322734576
ASSATQVHK	9	Unmodified	_ASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7457275390625	2	464.745973	927.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.158	1	12.158	11.658	12.658	0								0	0	0	0.0014292	1	2524	2524		146.79	70.011	1				3421	8869	2038	2049	3474	3474					0.010754262322734576
ASSATQVHK	9	Unmodified	_ASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.745849609375	2	464.745973	927.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.145	1	12.145	11.645	12.645	0								0	0	0	0.009986	1	2517	2517		159.28	77.035	1				3422	8869	2038	2049	3475	3475					0.010754262322734576
ASSEFAKKK	9	Unmodified	_ASSEFAKKK_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;ENST00000566329.1_1_16:72134993-72137705:+|nuORF;DHX38|p.E514K|1|0.33|ENSG00000140829|chr16:72103114-72103114|G/A|missense_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2796325683594	2	498.279649	994.544745	-0.25556	-0.00012734	0.52048	0.00025934	0.26492	0.00013201	498.27971820741556	13.043	0.15656	13.043	12.994	13.151	0					14	4	4	0	0	0	0.015496	1	2884	2884		129.42	52.104	1	1598200			3423	785	2039	2050	3476	3476					0.04725456443236453
ASSEFAKKK	9	Unmodified	_ASSEFAKKK_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;ENST00000566329.1_1_16:72134993-72137705:+|nuORF;DHX38|p.E514K|1|0.33|ENSG00000140829|chr16:72103114-72103114|G/A|missense_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2794189453125	2	498.279649	994.544745	-0.69737	-0.00034748	0.29417	0.00014658	-0.4032	-0.0002009	498.2797432858097	13.049	0.18565	13.049	12.958	13.144	0					9	4	3	0	0	0	0.016683	1	3092	3092		127.46	55.584	1	945090			3424	785	2039	2050	3477	3477					0.04725456443236453
ASSFGNMIYK	10	Unmodified	_ASSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2710571289062	2	559.270967	1116.52738	0.5146	0.0002878	0.63504	0.00035516	1.1496	0.00064296	559.2707912055895	36.214	0.16216	36.214	36.123	36.285	0					9	4	3	0	0	0	0.31613	1	13646	13646		65.465	21.349	1	273860			3425	3161	2040	2051	3478	3478					-0.02622207154058742
ASSFGNMIYK	10	Unmodified	_ASSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2715454101562	2	559.270967	1116.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.137	1	36.137	35.637	36.637	0								0	0	0	0.14595	1	14016	14016		70.816	16.04	1				3426	3161	2040	2051	3479	3479					-0.02622207154058742
ASSGALRSK	9	Unmodified	_ASSGALRSK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;SP100|p.A416T|1|0.67|ENSG00000067066|chr2:230467170-230467170|G/A|missense_variant	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.74822998046875	2	438.748516	875.482479	-0.28155	-0.00012353	-0.38781	-0.00017015	-0.66936	-0.00029368	438.7483450265527	12.898	0.15059	12.898	12.844	12.994	0					11	7	3	0	0	0	0.13109	1	2478	2478		72.243	14.013	1	272730			3427	11433	2041	2052	3480	3480					0.03975730094896335
ASSGALRSK	9	Unmodified	_ASSGALRSK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;SP100|p.A416T|1|0.67|ENSG00000067066|chr2:230467170-230467170|G/A|missense_variant	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7483215332031	2	438.748516	875.482479	-0.37866	-0.00016613	-0.2238	-9.8193E-05	-0.60246	-0.00026433	438.74840531453486	13.114	0.58999	13.114	13.034	13.624	0					26	16	2	0	0	0	0.015992	1	2915	2915		128.6	29.973	1	7747900			3428	11433	2041	2052	3481	3481					0.03975730094896335
ASSGALRSK	9	Unmodified	_ASSGALRSK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;SP100|p.A416T|1|0.67|ENSG00000067066|chr2:230467170-230467170|G/A|missense_variant	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.7486267089844	2	438.748516	875.482479	-0.98209	-0.00043089	0.97326	0.00042702	-0.0088252	-3.872E-06	438.7489459366168	12.891	0.053841	12.891	12.855	12.909	0					8	3	3	0	0	0	0.061298	1	2593	2593		91.265	13.948	1	111430			3429	11433	2041	2052	3482	3482					0.03975730094896335
ASSGALRSK	9	Unmodified	_ASSGALRSK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;SP100|p.A416T|1|0.67|ENSG00000067066|chr2:230467170-230467170|G/A|missense_variant	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.74810791015625	2	438.748516	875.482479	-1.034	-0.00045366	0.58648	0.00025732	-0.44751	-0.00019634	438.74850574518103	12.898	0.070266	12.898	12.85	12.92	0					6	4	2	0	0	0	0.38666	1	2596	2596		42.864	2.0861	1	78178			3430	11433	2041	2052	3483	3483					0.03975730094896335
ASSGALRSK	9	Unmodified	_ASSGALRSK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;SP100|p.A416T|1|0.67|ENSG00000067066|chr2:230467170-230467170|G/A|missense_variant	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.74835205078125	2	438.748516	875.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.16	1	13.16	12.66	13.66	0								0	0	0	0.051298	1	3137	3137		85.862	0.50235	1				3431	11433	2041	2052	3484	3484					0.03975730094896335
ASSGLMTKK	9	Unmodified	_ASSGLMTKK_					0	0	0		KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant;ENSG00000128052|ENST00000263923|KDR;KDR|p.L371Pfs*2|1|0.41|ENSG00000128052|chr4:55110546-55110547|-/G|frameshift_variant;nc|ENSG00000128052|P35968-2|KDR;nc|ENSG00000128052|P35968-3|KDR	KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant	KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.75482177734375	2	461.754953	921.495352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.983	1	15.983	15.483	16.483	0								0	0	0	0.22075	1	4480	4480		47.96	10.8	1				3432	3529	2042	2053	3485	3485					0.03146425162788091
ASSGLSVVK	9	Unmodified	_ASSGLSVVK_					0	0	0		CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant;CHD8|p.V1538*|1|0.4|ENSG00000100888|chr14:21400267-21400267|T/-|frameshift_variant;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.24755859375	2	424.247818	846.481082	-2.6442	-0.0011218	1.7702	0.00075098	-0.874	-0.00037079	424.24844909562586	23.511	0.14021	23.511	23.418	23.558	0					6	3	2	0	0	0	0.51991	1	7198	7198		30.318	1.1477	1	82242			3433	507	2043	2054	3486	3486					0.05170096006145286
ASSGQEPKA	9	Unmodified	_ASSGQEPKA_					0	0	0			REV__ENSG00000275954|ENST00000620210|TBC1D3F	REV__ENSG00000275954|ENST00000620210|TBC1D3F	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7165832519531	2	437.716882	873.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.411	1	19.411	18.911	19.911	0								0	0	0	0.12601	1	6131	6131		65.465	10.689	1		+		3434	17775	2044	2055	3487	3487					-0.022562554130104218
ASSGTLVAAPL	11	Unmodified	_ASSGTLVAAPL_					0	0	0			REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.78009033203125	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.01	1	27.01	26.51	27.51	0								0	0	0	0.41312	1	8559	8559		34.173	1.3601	1		+		3435	19588	2045	2056	3488	3488					0.0510603672336174
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.850341796875	3	322.85042	965.529429	0.28863	9.3183E-05	-0.26512	-8.5594E-05	0.023505	7.5884E-06	322.85030198622775	16.74	0.24096	16.74	16.599	16.84	0					20	9	3	0	0	0	0.35021	1	3863	3863		45.972	4.5456	1	226260			3436	5253	2046	2057	3489	3489					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.8503112792969	3	322.85042	965.529429	0.53525	0.0001728	-0.61104	-0.00019728	-0.075797	-2.4471E-05	322.8502255483322	17.093	0.41504	17.093	16.809	17.224	0					25	10	4	0	0	0	0.27249	1	4714	4714		52.937	12.879	1	2958000			3437	5253	2046	2057	3490	3490					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7716979980469	2	483.771991	965.529429	-0.17553	-8.4914E-05	-0.98292	-0.00047551	-1.1584	-0.00056043	483.7714873346948	17.054	0.41529	17.054	16.929	17.344	0					26	10	4	0	0	0	0.24334	1	4717	4717		40.778	10.275	1	2210000			3438	5253	2046	2057	3491	3491					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.8503112792969	3	322.85042	965.529429	-0.66762	-0.00021554	0.66234	0.00021384	-0.0052794	-1.7045E-06	322.85060350283163	16.776	0.20406	16.776	16.673	16.877	0					17	8	3	0	0	0	0.21263	1	4103	4103		60.118	3.6845	1	184700			3439	5253	2046	2057	3492	3492					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7718811035156	2	483.771991	965.529429	0.67279	0.00032548	-0.98721	-0.00047759	-0.31442	-0.00015211	483.7715371545523	17.055	0.51653	17.055	16.801	17.318	0					31	10	4	0	0	0	0.11411	1	4938	4938		51.193	0	1	13183000			3440	5253	2046	2057	3493	3493					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7716064453125	2	483.771991	965.529429	-0.26701	-0.00012917	-0.24453	-0.00011829	-0.51154	-0.00024747	483.77190378737373	16.85	0.29296	16.85	16.685	16.978	0					19	8	3	0	0	0	0.12834	1	4054	4054		47.657	13.485	1	893060			3441	5253	2046	2057	3494	3494					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7718200683594	2	483.771991	965.529429	0.87121	0.00042147	-1.505	-0.0007281	-0.63384	-0.00030663	483.7712533004436	17.03	0.56311	17.03	16.73	17.293	0					31	11	4	0	0	0	0.040209	1	4781	4781		72.879	1.0018	1	8000800			3442	5253	2046	2057	3495	3495					0.045285896460427466
ASSIPVNYK	9	Unmodified	_ASSIPVNYK_					0	0	0			REV__nc|ENSG00000285708|Q9H334-6|FOXP1	REV__nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7678527832031	2	489.766374	977.518196	-0.071417	-3.4978E-05	-1.1166	-0.00054688	-1.188	-0.00058185	489.7670055763543	26.094	0.40802	26.094	25.885	26.293	0					20	8	4	0	0	0	0.087861	1	9332	9332		82.241	2.7895	1	471270	+		3443	14088	2047	2058	3496	3496					0.02853767551891906
ASSIVIRHM	9	Unmodified	_ASSIVIRHM_					0	0	0			REV__nc|ENSG00000172575|O95267-4|RASGRP1	REV__nc|ENSG00000172575|O95267-4|RASGRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.52349853515625	3	338.523538	1012.54878	0.23067	7.8089E-05	-0.83521	-0.00028274	-0.60454	-0.00020465	338.5233338788572	14.526	0.1095	14.526	14.477	14.587	0					9	4	3	0	0	0	0.51817	1	3004	3004		37.812	0	1	181660	+		3444	16473	2048	2059	3497	3497					0.04301222665299065
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.27880859375	2	474.279649	946.544745	-0.26126	-0.00012391	-0.51117	-0.00024244	-0.77243	-0.00036635	474.2794032458106	11.635	0.077709	11.635	11.588	11.665	0					8	3	3	0	0	0	0.15558	1	2182	2182		66.962	2.7547	1	810330			3445	6381	2049	2060	3498	3498					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.27978515625	2	474.279649	946.544745	-0.48168	-0.00022845	0.14799	7.0188E-05	-0.33369	-0.00015826	474.2797316396974	11.879	1.454	11.879	11.735	13.189	0					101	46	5	0	0	0	0.054723	2	2347	2347;2501		93.598	26.07	1	16290000			3446	6381	2049	2060	3499;3500	3499					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.27996826171875	2	474.279649	946.544745	-1.5989	-0.00075833	0.52585	0.0002494	-1.0731	-0.00050893	474.27988913859997	11.674	1.2733	11.674	11.587	12.86	0					137	74	4	0	0	0	0.032383	2	2542	2341;2542		106.68	31.64	1	57885000			3447	6381	2049	2060	3501;3502	3502					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2792663574219	2	474.279649	946.544745	-1.5997	-0.00075871	1.3384	0.00063479	-0.26128	-0.00012392	474.2801978159319	12.986	0.49272	12.986	12.871	13.364	0					34	25	2	0	0	0	0.51991	1	2705	2705		30.318	2.4355	1	50522			3448	6381	2049	2060	3503	3503					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2792053222656	2	474.279649	946.544745	0.60876	0.00028872	-1.3027	-0.00061784	-0.69392	-0.00032911	474.2791681359458	11.957	5.5556	11.957	11.762	17.318	0					339	121	5	0	0	0	0.021015	6	2861	2522;2688;2861;3061;3404;3765		120.31	29.726	1	515490000			3449	6381	2049	2060	3504;3505;3506;3507;3508;3509	3506					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.27960205078125	2	474.279649	946.544745	-0.46541	-0.00022074	-0.17601	-8.348E-05	-0.64143	-0.00030422	474.2796238465458	11.628	0.72322	11.628	11.554	12.278	0					75	42	2	0	0	0	0.022698	2	2199	2199;2290		117.53	10.518	1	29056000			3450	6381	2049	2060	3510;3511	3510					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2799987792969	2	474.279649	946.544745	-2.5886	-0.0012277	1.4757	0.00069988	-1.1129	-0.00052784	474.2803424649564	11.622	0.77003	11.622	11.549	12.319	0					67	45	2	0	0	0	0.099758	2	2197	2197;2288		79.489	17.382	1	14724000			3451	6381	2049	2060	3512;3513	3512					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2793884277344	2	474.279649	946.544745	0.69788	0.00033099	-1.4851	-0.00070436	-0.78723	-0.00037337	474.27903366938347	11.893	3.6471	11.893	11.767	15.414	0					202	83	5	0	0	0	0.0088974	3	2675	2354;2675;3972		143.37	29.962	1	247480000			3452	6381	2049	2060	3514;3515;3516	3515					0.06933456443232444
ASSKDAIKK	9	Unmodified	_ASSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.279296875	2	474.279649	946.544745	2.36	0.0011193	-2.5528	-0.0012107	-0.19278	-9.1433E-05	474.27881268743926	11.916	2.5814	11.916	11.76	14.341	0					176	62	6	0	0	0	0.021015	1	2360	2360		120.31	32.552	1	259270000			3453	6381	2049	2060	3517	3517					0.06933456443232444
ASSKDAIKKK	10	Unmodified	_ASSKDAIKKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3274536132812	2	538.327131	1074.63971	1.9093	0.0010278	-0.31374	-0.00016889	1.5956	0.00085893	538.3271142961167	11.128	0.10556	11.128	11.064	11.169	0					7	3	3	0	0	0	0.049666	1	2203	2203		109.44	27.198	1	164140			3454	6381	2050	2061	3518	3518					0.10537389914406958
ASSKDAIKKK	10	Unmodified	_ASSKDAIKKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3282470703125	2	538.327131	1074.63971	3.3676	0.0018128	-0.71315	-0.00038391	2.6544	0.0014289	538.3266921947207	11.133	0.057952	11.133	11.095	11.153	0					6	3	2	0	0	0	0.14151	1	2128	2128		88.177	23.97	1	251010			3455	6381	2050	2061	3519	3519					0.10537389914406958
ASSKLAIMK	9	Unmodified	_ASSKLAIMK_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.78125	2	474.78097	947.547388	0.95104	0.00045153	-0.71818	-0.00034098	0.23286	0.00011056	474.7807484979438	22.525	0.10177	22.525	22.481	22.583	0					5	3	2	0	0	0	0.12834	1	6397	6397		72.879	3.2516	1	70605			3456	1170	2051	2062	3520	3520					0.07151588576550694
ASSLKPAPTLQ	11	Unmodified	_ASSLKPAPTLQ_					0	0	0			REV__ENST00000006053.6_2_16:57417041-57417284:+|nuORF	REV__ENST00000006053.6_2_16:57417041-57417284:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.8194580078125	2	556.819138	1111.62372	0.56041	0.00031204	-0.017324	-9.6464E-06	0.54308	0.0003024	556.819136849222	27.33	0.26353	27.33	27.237	27.501	0					14	6	3	0	0	0	0.074075	1	9541	9541		96.034	5.6638	1	507600	+		3457	17856	2052	2063	3521	3521					0.07237683677522
ASSLPTLSHPA	11	Unmodified	_ASSLPTLSHPA_					0	0	0		ENST00000451737.1_1_10:96990486-96990897:-|nuORF	ENST00000451737.1_1_10:96990486-96990897:-|nuORF	ENST00000451737.1_1_10:96990486-96990897:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.8614501953125	3	360.860984	1079.56112	1.2081	0.00043596	-0.24184	-8.7272E-05	0.96627	0.00034869	360.8608381551767	21.114	0.66198	21.114	21.025	21.687	0					22	13	3	0	0	0	0.7098	1	6821	6821		29.551	6.0364	1	1570600			3458	9654	2053	2064	3522	3522					0.024525376093379236
ASSLSHLLVL	10	Unmodified	_ASSLSHLLVL_					0	0	0		ENST00000555591.1_1_14:24801652-24802170:-|nuORF;ADCY4|p.R528Gfs*3|1|0.38|ENSG00000129467|chr14:24326152-24326152|G/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4	ENST00000555591.1_1_14:24801652-24802170:-|nuORF	ENST00000555591.1_1_14:24801652-24802170:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	347.209716796875	3	347.209725	1038.60735	-0.068843	-2.3903E-05	-0.19917	-6.9154E-05	-0.26801	-9.3057E-05	347.2097158363664	35.716	0.14573	35.716	35.644	35.79	0					6	5	2	0	0	0	0.72821	1	12750	12750		36.447	20.805	1	146560			3459	69	2054	2065	3523	3523					0.08958602511415847
ASSLSTIPAA	10	Unmodified	_ASSLSTIPAA_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.25	2	459.250557	916.486562	-2.6152	-0.001201	2.2131	0.0010164	-0.40213	-0.00018468	459.25138010216506	23.457	0.3125	23.457	23.326	23.638	0					11	7	2	0	0	0	0.54197	1	7160	7160		40.778	10.46	1	51385	+		3460	17396	2055	2066	3524	3524					0.024977747979505693
ASSLTIDKL	9	Unmodified	_ASSLTIDKL_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1;POU2AF1|p.A226V|2|0.19|ENSG00000110777|chr11:111354355-111354355|G/A|missense_variant	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2731628417969	2	474.274032	946.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.988	1	30.988	30.488	31.488	0								0	0	0	0.18645	1	11641	11641		52.937	6.9645	1				3461	2642	2056	2067	3525	3525					0.058106343490862855
ASSLTQVTK	9	Unmodified	_ASSLTQVTK_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7635498046875	2	467.763832	933.513111	0.33679	0.00015754	-0.13104	-6.1295E-05	0.20575	9.6244E-05	467.7638275184064	21.742	0.13944	21.742	21.653	21.792	0					8	3	3	0	0	0	0.029571	1	6949	6949		109.44	28.984	1	391800			3462	5229	2057	2068	3526	3526					0.043694636892951166
ASSLTQVTK	9	Unmodified	_ASSLTQVTK_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7635498046875	2	467.763832	933.513111	0.60177	0.00028149	-1.0078	-0.0004714	-0.406	-0.00018991	467.7634530937803	21.628	0.31744	21.628	21.421	21.738	0					11	6	3	0	0	0	0.19952	1	7086	7086		61.691	8.7546	1	652060			3463	5229	2057	2068	3527	3527					0.043694636892951166
ASSNLRPPWV	10	Unmodified	_ASSNLRPPWV_					0	0	0			REV__nc|ENSG00000165626|Q8N7W2-2|BEND7	REV__nc|ENSG00000165626|Q8N7W2-2|BEND7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.205078125	3	376.204974	1125.59309	0.71368	0.00026849	-0.16097	-6.0558E-05	0.55271	0.00020793	376.2049960769533	25.35	0.47166	25.35	25.144	25.616	0					27	9	5	0	0	0	0.65213	1	8854	8854		26.063	0	1	2448000	+		3464	16054	2058	2069	3528	3528					0.035319500831292316
ASSPIPVGF	9	Unmodified	_ASSPIPVGF_					0	0	0			REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7348327636719	2	437.737086	873.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.756	1	17.756	17.256	18.256	0								0	0	0	0.30835	1	4494	4494		33.516	1.9858	1		+		3465	16023	2059	2070	3529	3529					0.017827109774430028
ASSPRSRRP	9	Unmodified	_ASSPRSRRP_					0	0	0			REV__NOTCH3|p.C1344Vfs*76|1|0.14|ENSG00000074181|chr19:15177899-15177899|G/-|frameshift_variant	REV__NOTCH3|p.C1344Vfs*76|1|0.14|ENSG00000074181|chr19:15177899-15177899|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.8575744628906	3	338.524818	1012.55262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.584	1	14.584	14.084	15.084	0								0	0	0	0.37146	1	3114	3114		14.137	0	1		+		3466	21297	2060	2071	3530	3530					0.04685028483379483
ASSRHGIQK	9	Unmodified	_ASSRHGIQK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000490880.5_1_2:231065532-231076254:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.517578125	3	328.517552	982.530826	0.52789	0.00017342	-0.56606	-0.00018596	-0.038165	-1.2538E-05	328.5173846273853	12.147	0.13596	12.147	12.079	12.215	0					9	4	3	0	0	0	0.25716	1	2499	2499		54.776	14.204	1	405080			3467	4030	2061	2072	3531	3531					0.03886223734809846
ASSRHGIQK	9	Unmodified	_ASSRHGIQK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000490880.5_1_2:231065532-231076254:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2731018066406	2	492.27269	982.530826	-0.58483	-0.0002879	0.35414	0.00017433	-0.2307	-0.00011357	492.2728056782344	12.114	0.094343	12.114	12.028	12.122	0					4	2	2	0	0	0	0.032181	1	2494	2494		80.455	9.1589	1	93130			3468	4030	2061	2072	3532	3532					0.03886223734809846
ASSRHGIQK	9	Unmodified	_ASSRHGIQK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000490880.5_1_2:231065532-231076254:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.5175476074219	3	328.517552	982.530826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.104	1	12.104	11.604	12.604	0								0	0	0	0.12601	1	2498	2498		65.465	19.493	1				3469	4030	2061	2072	3533	3533					0.03886223734809846
ASSRNSKKIP	10	Unmodified	_ASSRNSKKIP_					0	0	0		nc|ENSG00000064692|Q9Y6H5-4|SNCAIP;ENSG00000064692|ENST00000261368|SNCAIP;nc|ENSG00000064692|Q9Y6H5-3|SNCAIP;nc|ENSG00000064692|Q9Y6H5-5|SNCAIP;ENST00000512146.6_1_5:121736783-121799188:+|nuORF;nc|ENSG00000064692|Q9Y6H5-2|SNCAIP	nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.2120056152344	3	363.212128	1086.61456	0.48645	0.00017668	-0.68438	-0.00024858	-0.19793	-7.1891E-05	363.2118919512893	13.415	0.28668	13.415	13.218	13.505	0					12	6	3	0	0	0	0.72821	1	3269	3269		11.636	11.636	1	215000			3470	1353	2062	2073	3534	3534					0.07471335111858934
ASSSAFRCKFK	11	Unmodified	_ASSSAFRCKFK_					0	0	0			REV__ENST00000503745.1_1_4:99300305-99313214:+|nuORF	REV__ENST00000503745.1_1_4:99300305-99313214:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	411.21539306640625	3	411.213252	1230.61793	3.4263	0.0014089	1.3175	0.00054178	4.7438	0.0019507	411.5481593309605	12.763	0.12974	12.763	12.683	12.813	0					12	7	2	0	0	0	0.73562	1	2539	2539		24.232	0	1	89043	+		3471	19819	2063	2074	3535	3535					0.011842618941955152
ASSSALPTW	9	Unmodified	_ASSSALPTW_					0	0	0			REV__ENST00000262510.10_2_16:57051083-57054679:+|nuORF	REV__ENST00000262510.10_2_16:57051083-57054679:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2311096191406	2	460.229625	918.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.57	1	17.57	17.07	18.07	0								0	0	0	0.3304	1	4428	4428		29.15	1.2673	1		+		3472	18031	2064	2075	3536	3536					-0.017787808905836755
ASSSGSTAIKK	11	Unmodified	_ASSSGSTAIKK_					0	0	0		ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.78564453125	2	518.785296	1035.55604	0.056415	2.9267E-05	0.54894	0.00028478	0.60536	0.00031405	518.7855466763677	13.114	0.19506	13.114	13.07	13.265	0					12	5	4	0	0	0	0.067676	1	2916	2916		97.597	34.063	1	1799500			3473	3705	2065	2076	3537	3537					0.039682337466956596
ASSSGSTAIKK	11	Unmodified	_ASSSGSTAIKK_					0	0	0		ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7855224609375	2	518.785296	1035.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.152	1	13.152	12.652	13.652	0								0	0	0	0.12082	1	3134	3134		72.096	8.5617	1				3474	3705	2065	2076	3538	3538					0.039682337466956596
ASSSGSTAIKK	11	Unmodified	_ASSSGSTAIKK_					0	0	0		ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7854614257812	2	518.785296	1035.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.115	1	13.115	12.615	13.615	0								0	0	0	0.37939	1	2964	2964		41.08	0.3019	1				3475	3705	2065	2076	3539	3539					0.039682337466956596
ASSSVSISH	9	Unmodified	_ASSSVSISH_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.716552734375	2	437.716882	873.41921	-0.56604	-0.00024777	0.15091	6.6054E-05	-0.41514	-0.00018171	437.7169659399171	19.401	0.36376	19.401	19.293	19.656	0					9	7	2	0	0	0	0.22377	1	6004	6004		58.782	14.405	1	225760			3476	2798	2066	2077	3540	3540					-0.02256255412999053
ASSTLATRQ	9	Unmodified	_ASSTLATRQ_					0	0	0			REV__ENST00000527167.5_1_22:42952032-42967202:+|nuORF	REV__ENST00000527167.5_1_22:42952032-42967202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7528991699219	2	467.751256	933.487959	2.638	0.0012339	1.2602	0.00058948	3.8983	0.0018234	467.7518620647885	30.171	0.61191	30.171	29.764	30.376	0					36	12	4	0	0	0	0.35021	1	11101	11101		45.972	1.5951	1	1685300	+		3477	18551	2067	2078	3541	3541					0.018554088867176688
ASSTPGLNK	9	Unmodified	_ASSTPGLNK_					0	0	0		ENST00000301490.8_2_11:67395419-67395788:-|nuORF;ENSG00000167799|ENST00000376693|NUDT8	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7348327636719	2	437.735074	873.455596	0.70513	0.00030866	-0.87168	-0.00038157	-0.16655	-7.2904E-05	437.7347554998648	17.947	0.21921	17.947	17.836	18.055	0					9	4	3	0	0	0	0.21263	1	5436	5436		60.118	14.146	1	700770			3478	6030	2068	2079	3542	3542					0.01380621483701816
ASSVPISLSG	10	Unmodified	_ASSVPISLSG_					0	0	0			REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2503967285156	2	459.250557	916.486562	-0.42133	-0.00019349	0.63775	0.00029289	0.21642	9.9393E-05	459.2510296355984	23.385	0.19366	23.385	23.249	23.442	0					7	5	2	0	0	0	0.60076	1	6764	6764		34.173	0.25091	1	57317	+		3479	22247	2069	2080	3543	3543					0.02497774797961938
ASSVRTPAK	9	Unmodified	_ASSVRTPAK_					0	0	0		ENST00000589838.5_1_19:11548789-11552125:+|nuORF	ENST00000589838.5_1_19:11548789-11552125:+|nuORF	ENST00000589838.5_1_19:11548789-11552125:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.76409912109375	2	458.764166	915.513779	0.72215	0.0003313	-1.1723	-0.00053779	-0.45011	-0.00020649	458.76370440286564	14.191	0.40925	14.191	13.923	14.332	0					19	8	3	0	0	0	0.12278	1	3657	3657		74.165	12.058	1	207340			3480	10941	2070	2081	3544	3544					0.052643031289903774
ASSVVGITGM	10	Unmodified	_ASSVVGITGM_					0	0	0		ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENST00000593062.5_1_19:39109833-39121488:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2387390136719	2	461.239135	920.463718	-0.15038	-6.9362E-05	-0.44521	-0.00020535	-0.59559	-0.00027471	461.2390211689624	22.768	0.16737	22.768	22.66	22.828	0					5	3	2	0	0	0	0.46215	1	7765	7765		49.442	3.4693	1	170350			3481	10981	2071	2082	3545	3545					0.0003043240883471299
ASTAEDSLLI	10	Unmodified	_ASTAEDSLLI_					0	0	0			REV__tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	REV__tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.5138854980469	3	340.513362	1018.51826	1.4775	0.0005031	-0.072088	-2.4547E-05	1.4054	0.00047856	340.5134486197281	17.994	0.31952	17.994	17.836	18.156	0					15	6	3	0	0	0	0.54197	1	5456	5456		45.022	0.64502	1	2434800	+		3482	22012	2072	2083	3546	3546					0.009737227612504284
ASTGHLLVPI	10	Unmodified	_ASTGHLLVPI_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant;PCDH12|p.E593K|1|0.37|ENSG00000113555|chr5:141956075-141956075|C/T|missense_variant	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5342712402344	3	336.53432	1006.58113	-0.67407	-0.00022685	0.50813	0.000171	-0.16593	-5.5843E-05	336.53444770613845	25.895	1.0959	25.895	25.373	26.469	0					52	32	2	0	0	0	0.72821	1	8312	8312		22.58	8.4425	1	84546			3483	2807	2073	2084	3547	3547					0.0781033333993264
ASTGHLLVPI	10	Unmodified	_ASTGHLLVPI_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant;PCDH12|p.E593K|1|0.37|ENSG00000113555|chr5:141956075-141956075|C/T|missense_variant	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.547	1	31.547	31.047	32.047	0								0	0	0	0.4201	1	10463	10463		23.523	5.2606	1				3484	2807	2073	2084	3548	3548					0.0781033333993264
ASTGISDKPR	10	Unmodified	_ASTGISDKPR_					0	0	0		ENST00000322310.9_1_9:140084384-140084663:+|nuORF	ENST00000322310.9_1_9:140084384-140084663:+|nuORF	ENST00000322310.9_1_9:140084384-140084663:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.5221862792969	3	344.520851	1030.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.086	1	33.086	32.586	33.586	0								0	0	0	0.39244	1	12633	12633		37.508	4.7576	1				3485	8624	2074	2085	3549	3549					0.026673669495039576
ASTGLSLTK	9	Unmodified	_ASTGLSLTK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2526550292969	2	439.2531	876.491647	-0.37044	-0.00016272	-0.12085	-5.3082E-05	-0.49128	-0.0002158	439.2531196268216	25.74	0.26244	25.74	25.612	25.874	0					10	4	3	0	0	0	0.04067	1	8819	8819		98.582	36.475	1	441430			3486	1519	2075	2086	3550	3550					0.048460786605687645
ASTGLSVGGI	10	Unmodified	_ASTGLSVGGI_					0	0	0		ENST00000524751.5_1_11:126139211-126143243:+|nuORF;ENST00000526525.1_1_11:126139211-126143019:+|nuORF;ENST00000534011.5_1_11:126142574-126144844:+|nuORF;ENST00000534315.5_1_11:126141345-126145243:+|nuORF;nc|ENSG00000110074|Q96CU9-3|FOXRED1;ENSG00000110074|ENST00000263578|FOXRED1	ENST00000524751.5_1_11:126139211-126143243:+|nuORF	ENST00000524751.5_1_11:126139211-126143243:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.23779296875	2	431.23745	860.460347	0.19377	8.3561E-05	-0.48064	-0.00020727	-0.28687	-0.00012371	431.23738135899737	20.421	0.3873	20.421	20.164	20.551	0					12	8	2	0	0	0	0.44469	1	6361	6361		51.335	0.14276	1	99032			3487	10350	2076	2087	3551	3551					0.024535056264994637
ASTILVVCAI	10	Unmodified	_ASTILVVCAI_					0	0	0			REV__ENST00000510841.1_1_4:151935827-151936681:-|nuORF	REV__ENST00000510841.1_1_4:151935827-151936681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.29022216796875	2	495.288628	988.562703	0.011076	5.4858E-06	4.2737	0.0021167	4.2848	0.0021222	495.2909854835997	18.57	0.19257	18.57	18.503	18.695	0					9	7	2	0	0	0	0.54861	1	4649	4649		27.882	0	1	480070	+		3488	19872	2077	2088	3552	3552					0.06796455373739718
ASTKEPTAL	9	Unmodified	_ASTKEPTAL_					0	0	0			REV__ENST00000046794.9_1_5:169724659-169724776:-|nuORF	REV__ENST00000046794.9_1_5:169724659-169724776:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2514953613281	2	459.250557	916.486562	-0.077971	-3.5808E-05	0.19024	8.7368E-05	0.11227	5.156E-05	459.25076959645713	31.328	0.25956	31.328	31.243	31.503	0					9	6	2	0	0	0	0.42902	1	10764	10764		39.253	0.44669	1	94700	+		3489	17859	2078	2089	3553	3553					0.024977747979505693
ASTLSLVNK	9	Unmodified	_ASTLSLVNK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.77447509765625	2	466.7742	931.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.395	1	28.395	27.895	28.895	0								0	0	0	0.30009	1	9419	9419		35.152	3.1972	1				3490	5298	2079	2090	3554	3554					0.06534054068958994
ASTLSLVNK	9	Unmodified	_ASTLSLVNK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7738037109375	2	466.7742	931.533846	0.6376	0.00029762	-1.2516	-0.00058421	-0.61398	-0.00028659	466.77352235093537	28.55	0.21444	28.55	28.443	28.658	0					8	4	2	0	0	0	0.11898	1	10372	10372		75.043	8.614	1	401940			3491	5298	2079	2090	3555	3555					0.06534054068958994
ASTLTYHVRR	10	Unmodified	_ASTLTYHVRR_					0	0	0		nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.3330078125	2	602.333279	1202.652	0.14458	8.7086E-05	-0.65969	-0.00039735	-0.51511	-0.00031027	602.332840029471	31.377	0.22157	31.377	31.291	31.512	0					17	9	3	0	0	0	0.17732	1	10075	10075		82.241	13.394	1	170180			3492	1724	2080	2091	3556	3556					0.05878426377466894
ASTLTYHVRR	10	Unmodified	_ASTLTYHVRR_					0	0	0		nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.33203125	2	602.333279	1202.652	0.4774	0.00028755	-1.4009	-0.00084382	-0.92352	-0.00055627	602.3322717453896	31.629	0.26235	31.629	31.531	31.794	0					16	6	3	0	0	0	0.17732	1	11540	11540		82.241	15.279	1	394180			3493	1724	2080	2091	3557	3557					0.05878426377466894
ASTLTYHVRR	10	Unmodified	_ASTLTYHVRR_					0	0	0		nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.3325805664062	2	602.333279	1202.652	-1.8889	-0.0011378	0.81484	0.00049081	-1.0741	-0.00064695	602.3337149683517	31.381	0.30637	31.381	31.287	31.593	0					15	7	3	0	0	0	0.17732	1	10807	10807		82.241	82.241	1	679560			3494	1724	2080	2091	3558	3558					0.05878426377466894
ASTLVILRK	9	Unmodified	_ASTLVILRK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.82928466796875	2	500.829309	999.644065	-0.046493	-2.3285E-05	-1.157	-0.00057946	-1.2035	-0.00060274	500.828989567563	27.418	0.10254	27.418	27.366	27.468	0					5	3	2	0	0	0	0.43488	1	8457	8457		31.53	8.4873	1	67047			3495	6601	2081	2092	3559	3559					0.1442289912798742
ASTLVILRK	9	Unmodified	_ASTLVILRK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.82891845703125	2	500.829309	999.644065	-0.13572	-6.797E-05	-0.44184	-0.00022128	-0.57755	-0.00028926	500.82918486208155	27.7	0.22264	27.7	27.61	27.833	0					8	5	2	0	0	0	0.12278	1	9718	9718		58.23	0	1	546350			3496	6601	2081	2092	3560	3560					0.1442289912798742
ASTLVILRK	9	Unmodified	_ASTLVILRK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.82940673828125	2	500.829309	999.644065	-0.59269	-0.00029684	0.51201	0.00025643	-0.080681	-4.0407E-05	500.82959112630016	27.69	0.16131	27.69	27.586	27.747	0					8	3	3	0	0	0	0.36135	1	10072	10072		54.776	20.604	1	323950			3497	6601	2081	2092	3561	3561					0.1442289912798742
ASTPFQNIL	9	Unmodified	_ASTPFQNIL_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7669982910156	2	495.766374	989.518196	-0.6683	-0.00033132	1.1471	0.00056871	0.47883	0.00023739	495.76687139068355	41.18	0.35729	41.18	40.985	41.343	0					14	8	2	0	0	0	0.25716	1	16346	16346		54.776	10.399	1	168080			3498	2625	2082	2093	3562	3562					0.023017675519099612
ASTQMSSSLKK	11	Unmodified	_ASTQMSSSLKK_					0	0	0			REV__ENSG00000103404|ENST00000219689|USP31	REV__ENSG00000103404|ENST00000219689|USP31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.87158203125	3	389.872784	1166.59652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.196	1	23.196	22.696	23.696	0								0	0	0	0.45144	1	7958	7958		22.562	0	1		+		3499	13678	2083	2094	3563	3563					0.019888320748350452
ASTRTIFKK	9	Unmodified	_ASTRTIFKK_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.21343994140625	3	351.213469	1050.61858	0.70164	0.00024642	-0.69602	-0.00024445	0.0056192	1.9735E-06	351.2131568939808	17.902	0.19261	17.902	17.816	18.009	0					7	4	2	0	0	0	0.53064	1	5149	5149		29.17	6.5904	1	606500			3500	2669	2084	2095	3564	3564					0.09529424605557324
ASTSLLRLF	9	Unmodified	_ASTSLLRLF_					0	0	0			REV__COL5A1|p.A1736T|1|0.39|ENSG00000130635|chr9:134835040-134835040|G/A|missense_variant	REV__COL5A1|p.A1736T|1|0.39|ENSG00000130635|chr9:134835040-134835040|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	0.53459	0.00017991	-0.68095	-0.00022916	-0.14636	-4.9254E-05	336.53404801484345	37.053	1.572	37.053	36.302	37.874	0					86	47	2	0	0	0	0.61124	1	14288	14288		26.693	7.5894	1	176090	+		3501	12563	2085	2096	3565	3565					0.07810333339944009
ASTSQAFNK	9	Unmodified	_ASTSQAFNK_					0	0	0		CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant;CLMN|p.K865Rfs*10|2|0.35|ENSG00000165959|chr14:95196612-95196612|T/-|frameshift_variant;ENSG00000165959|ENST00000298912|CLMN;ENST00000556454.1_1_14:95660863-95677170:-|nuORF	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2383728027344	2	477.237981	952.461409	-1.4945	-0.00071321	0.89215	0.00042577	-0.60231	-0.00028745	477.238537567	17.735	0.14399	17.735	17.657	17.801	0					9	4	3	0	0	0	0.27249	1	4495	4495		52.937	13.684	1	231510			3502	557	2086	2097	3566	3566					-0.016722800046181874
ASTSQAFNK	9	Unmodified	_ASTSQAFNK_					0	0	0		CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant;CLMN|p.K865Rfs*10|2|0.35|ENSG00000165959|chr14:95196612-95196612|T/-|frameshift_variant;ENSG00000165959|ENST00000298912|CLMN;ENST00000556454.1_1_14:95660863-95677170:-|nuORF	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.23779296875	2	477.237981	952.461409	0.64088	0.00030585	-1.2987	-0.00061979	-0.65782	-0.00031394	477.2375299739799	17.992	0.16819	17.992	17.887	18.055	0					8	3	3	0	0	0	0.18416	1	5459	5459		63.534	6.8128	1	1061100			3503	557	2086	2097	3567	3567					-0.016722800046181874
ASTTFGNIVK	10	Unmodified	_ASTTFGNIVK_					0	0	0		ENST00000461436.1_1_3:152019736-152019862:+|nuORF	ENST00000461436.1_1_3:152019736-152019862:+|nuORF	ENST00000461436.1_1_3:152019736-152019862:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.86114501953125	3	346.525713	1036.55531	1.5042	0.00052126	1.249	0.00043281	2.7532	0.00095407	346.86031079523605	13.071	0.15298	13.071	13.006	13.159	0					8	3	3	0	0	0	0.65051	1	2948	2948		28.081	0	1	273500			3504	9734	2087	2098	3568	3568					0.03849439097666618
ASTTSKAVL	9	Unmodified	_ASTTSKAVL_					0	0	0			REV__ENSG00000167741|ENST00000381550|GGT6	REV__ENSG00000167741|ENST00000381550|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.2530212402344	2	439.2531	876.491647	-1.0012	-0.00043977	1.155	0.00050733	0.15382	6.7568E-05	439.25353581171055	25.46	0.13379	25.46	25.373	25.507	0					9	5	2	0	0	0	0.55379	1	7915	7915		26.693	4.733	1	79205	+		3505	16213	2088	2099	3569	3569					0.04846078660580133
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7817077636719	2	472.781828	943.549102	-0.026064	-1.2323E-05	0.61184	0.00028927	0.58578	0.00027695	472.78190882849884	40.674	0.14024	40.674	40.584	40.725	0					16	8	2	0	0	0	0.12239	1	13118	13118		74.255	28.303	1	85330			3506	2457	2089	2100	3570	3570					0.07506965656796183
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7826232910156	2	472.781828	943.549102	0.2328	0.00011006	-1.2379	-0.00058527	-1.0051	-0.0004752	472.78113735062567	40.988	0.37201	40.988	40.8	41.172	0					28	12	3	0	0	0	0.10915	1	15572	15572		77.318	27.876	1	372250			3507	2457	2089	2100	3571	3571					0.07506965656796183
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.78118896484375	2	472.781828	943.549102	-1.4936	-0.00070615	0.83211	0.00039341	-0.6615	-0.00031275	472.78225383959057	40.773	0.14389	40.773	40.676	40.82	0					13	8	2	0	0	0	0.021961	1	13616	13616		118.74	59.961	1	157240			3508	2457	2089	2100	3572	3572					0.07506965656796183
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7818908691406	2	472.781828	943.549102	-0.52466	-0.00024805	0.90294	0.00042689	0.37828	0.00017885	472.7821062211002	40.754	0.19364	40.754	40.644	40.838	0					17	10	2	0	0	0	0.019882	1	14441	14441		122.18	55.747	1	88605			3509	2457	2089	2100	3573	3573					0.07506965656796183
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.78131103515625	2	472.781828	943.549102	-0.57207	-0.00027046	-1.2235	-0.00057843	-1.7955	-0.00084889	472.78120709418323	40.9	0.28526	40.9	40.762	41.047	0					6	4	2	0	0	0	0.16002	1	16244	16244		66.429	9.9955	1	85545			3510	2457	2089	2100	3574	3574					0.07506965656796183
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7815246582031	2	472.781828	943.549102	0.6348	0.00030012	-1.4799	-0.00069967	-0.8451	-0.00039955	472.7810485385448	40.934	0.49217	40.934	40.748	41.24	0					17	9	3	0	0	0	0.0061615	1	16235	16235		153.04	48.289	1	879980			3511	2457	2089	2100	3575	3575					0.07506965656796183
ASVDLKNTG	9	Unmodified	_ASVDLKNTG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.G150Afs*25|1|0.19|ENSG00000275395|chr19:39927915-39927915|G/-|frameshift_variant;FCGBP|p.Q22K|1|0.08|ENSG00000275395|chr19:39928298-39928298|G/T|missense_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7402038574219	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.918	1	20.918	20.418	21.418	0								0	0	0	0.0075199	1	5920	5920		112.41	35.564	1				3512	11803	2090	2101	3576	3576					0.010566041381366631
ASVDLKNTG	9	Unmodified	_ASVDLKNTG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.G150Afs*25|1|0.19|ENSG00000275395|chr19:39927915-39927915|G/-|frameshift_variant;FCGBP|p.Q22K|1|0.08|ENSG00000275395|chr19:39928298-39928298|G/T|missense_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7405090332031	2	452.740357	903.46616	0.87717	0.00039713	-1.6554	-0.00074947	-0.77825	-0.00035234	452.73996980525493	21.134	0.4121	21.134	21.025	21.437	0					16	8	3	0	0	0	0.061298	1	6844	6844		91.265	25.8	1	939670			3513	11803	2090	2101	3577	3577					0.010566041381366631
ASVETGFAK	9	Unmodified	_ASVETGFAK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.2375793457031	2	455.23745	908.460347	0.62549	0.00028475	-0.28458	-0.00012955	0.34091	0.0001552	455.23722940237644	24.383	0.068298	24.383	24.32	24.388	0					4	2	2	0	0	0	0.015496	1	7182	7182		129.42	57.544	1	89625			3514	1198	2091	2102	3578	3578					0.002455056264693667
ASVETGFAK	9	Unmodified	_ASVETGFAK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2372131347656	2	455.23745	908.460347	0.26328	0.00011986	0.016136	7.3455E-06	0.27942	0.0001272	455.2374107233693	24.678	0.18778	24.678	24.585	24.773	0					10	4	3	0	0	0	5.4201E-05	1	8327	8327		195.06	90.317	1	318280			3515	1198	2091	2102	3579	3579					0.002455056264693667
ASVETGFAK	9	Unmodified	_ASVETGFAK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.2366638183594	2	455.23745	908.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.408	1	24.408	23.908	24.908	0								0	0	0	0.040385	1	7468	7468		90.601	28.493	1				3516	1198	2091	2102	3580	3580					0.002455056264693667
ASVETGFAK	9	Unmodified	_ASVETGFAK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2370300292969	2	455.23745	908.460347	-0.13534	-6.1613E-05	-0.52955	-0.00024107	-0.66489	-0.00030268	455.2371371970404	24.619	0.2178	24.619	24.511	24.729	0					10	4	3	0	0	0	0.020674	1	8647	8647		120.87	24.678	1	772160			3517	1198	2091	2102	3581	3581					0.002455056264693667
ASVEVSKLK	9	Unmodified	_ASVEVSKLK_					0	0	0		CTCF|p.R368C|1|0.59|ENSG00000102974|chr16:67620712-67620712|C/T|missense_variant;nc|ENSG00000102974|P49711-2|CTCF;CTCF|p.E691Sfs*30|1|0.45|ENSG00000102974|chr16:67637752-67637752|A/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF	CTCF|p.R368C|1|0.59|ENSG00000102974|chr16:67620712-67620712|C/T|missense_variant	CTCF|p.R368C|1|0.59|ENSG00000102974|chr16:67620712-67620712|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.78912353515625	2	480.78985	959.565146	0.072876	3.5038E-05	-0.99548	-0.00047862	-0.9226	-0.00044358	480.7892862555793	20.829	0.092112	20.829	20.787	20.879	0					7	4	2	0	0	0	0.43488	1	5634	5634		38.754	5.238	1	91357			3518	706	2092	2103	3582	3582					0.08374627103057719
ASVFGTMPLK	10	Unmodified	_ASVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7867431640625	2	525.786253	1049.55795	0.51368	0.00027008	-0.041562	-2.1852E-05	0.47211	0.00024823	525.7863198492443	40.37	0.18103	40.37	40.311	40.492	0					23	10	3	0	0	0	0.39827	1	13512	13512		56.434	6.9922	1	174240			3519	4957	2093	2104	3583	3583					0.03515571230968817
ASVFGTMPLK	10	Unmodified	_ASVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7862548828125	2	525.786253	1049.55795	1.1872	0.00062422	-0.61734	-0.00032459	0.56988	0.00029963	525.7859979834678	40.362	0.17032	40.362	40.273	40.443	0					18	9	3	0	0	0	0.31613	1	14340	14340		65.465	16.024	1	105090			3520	4957	2093	2104	3584	3584					0.03515571230968817
ASVFGTMPLK	10	Unmodified	_ASVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.78662109375	2	525.786253	1049.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.517	1	40.517	40.017	41.017	0								0	0	0	2.8328E-05	1	16093	16093		155.58	48.902	1				3521	4957	2093	2104	3585	3585					0.03515571230968817
ASVGYAVTK	9	Unmodified	_ASVGYAVTK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.24749755859375	2	448.247818	894.481082	-0.30121	-0.00013501	-0.34917	-0.00015651	-0.65038	-0.00029153	448.24757393110553	22.876	0.19994	22.876	22.804	23.004	0					12	6	2	0	0	0	0.035106	1	6541	6541		104.01	37.584	1	312590			3522	6795	2094	2105	3586	3586					0.02962096006149295
ASVGYAVTK	9	Unmodified	_ASVGYAVTK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2477111816406	2	448.247818	894.481082	-0.44389	-0.00019897	0.12436	5.5744E-05	-0.31953	-0.00014323	448.2478319065933	23.218	0.14031	23.218	23.123	23.263	0					6	3	2	0	0	0	0.014413	1	7660	7660		131.62	65.187	1	1494700			3523	6795	2094	2105	3587	3587					0.02962096006149295
ASVGYAVTK	9	Unmodified	_ASVGYAVTK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2475891113281	2	448.247818	894.481082	-1.1761	-0.0005272	0.68952	0.00030908	-0.4866	-0.00021812	448.24816799660533	22.942	0.1921	22.942	22.847	23.039	0					11	6	2	0	0	0	0.040209	1	6814	6814		99.013	38.895	1	599700			3524	6795	2094	2105	3588	3588					0.02962096006149295
ASVGYAVTK	9	Unmodified	_ASVGYAVTK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2474060058594	2	448.247818	894.481082	-0.3292	-0.00014757	-0.32838	-0.00014719	-0.65758	-0.00029476	448.24771287596457	22.996	0.22491	22.996	22.869	23.094	0					9	5	2	0	0	0	0.0055674	1	6938	6938		155.58	56.21	1	254430			3525	6795	2094	2105	3589	3589					0.02962096006149295
ASVHNQNGQ	9	Unmodified	_ASVHNQNGQ_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.72271728515625	2	477.72303	953.431506	2.232	0.0010663	-3.2582	-0.0015565	-1.0261	-0.0004902	477.72171022836216	18.872	0.24684	18.872	18.784	19.031	0					12	5	3	0	0	0	0.12239	1	5722	5722		74.255	0.28031	1	1934800			3526	1267	2095	2106	3590	3590					-0.04707218949943126
ASVITATSK	9	Unmodified	_ASVITATSK_					0	0	0			REV__ENST00000566567.1_1_9:139000642-139000753:-|nuORF	REV__ENST00000566567.1_1_9:139000642-139000753:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2530212402344	2	439.2531	876.491647	-0.36872	-0.00016196	0.379	0.00016648	0.010279	4.5153E-06	439.25331219122853	23.72	0.21802	23.72	23.612	23.83	0					6	4	2	0	0	0	0.3269	1	8202	8202		47.96	0.30219	1	200630	+		3527	20346	2096	2107	3591	3591					0.048460786605687645
ASVKAIFSK	9	Unmodified	_ASVKAIFSK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.78662109375	2	475.78711	949.559667	-0.0032574	-1.5498E-06	-0.26914	-0.00012805	-0.2724	-0.0001296	475.786907924243	26.188	0.15104	26.188	26.113	26.264	0					7	5	2	0	0	0	0.55048	1	7925	7925		27.047	2.8446	1	85385			3528	1698	2097	2108	3592	3592					0.08286948311229025
ASVKAIFSK	9	Unmodified	_ASVKAIFSK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.78662109375	2	475.78711	949.559667	-0.074456	-3.5425E-05	-0.077099	-3.6683E-05	-0.15155	-7.2108E-05	475.7871001761773	26.268	0.13986	26.268	26.179	26.319	0					5	3	2	0	0	0	0.22823	1	8442	8442		58.246	11.789	1	66388			3529	1698	2097	2108	3593	3593					0.08286948311229025
ASVKAIFSK	9	Unmodified	_ASVKAIFSK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.786865234375	2	475.78711	949.559667	-0.61736	-0.00029373	-0.1957	-9.3109E-05	-0.81306	-0.00038684	475.7869603578964	26.409	0.32137	26.409	26.298	26.62	0					12	6	3	0	0	0	0.040209	1	9337	9337		99.013	3.1978	1	663310			3530	1698	2097	2108	3594	3594					0.08286948311229025
ASVNFSEFSK	10	Unmodified	_ASVNFSEFSK_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant	ENSG00000189403|ENST00000341423|HMGB1	ENSG00000189403|ENST00000341423|HMGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.2725219726562	2	558.272021	1114.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.451	1	36.451	35.951	36.951	0								0	0	0	0.32313	1	13750	13750		47.228	11.609	1				3531	7319	2098	2109	3595	3595					-0.023194551446067635
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2721252441406	2	473.271824	944.529095	-0.02187	-1.035E-05	-0.37879	-0.00017927	-0.40066	-0.00018962	473.27170590056846	24.279	0.21415	24.279	24.193	24.407	0					17	7	4	0	0	0	0.054723	1	7127	7127		93.598	27.168	1	462840			3532	195	2099	2110	3596	3596					0.05461169926184084
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2716064453125	2	473.271824	944.529095	0.2457	0.00011628	-0.096356	-4.5603E-05	0.14934	7.0678E-05	473.2717837850053	24.576	0.3865	24.576	24.45	24.836	0					17	9	2	0	0	0	0.0023831	1	8282	8282		172.25	24.206	1	5404000			3533	195	2099	2110	3597	3597					0.05461169926184084
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2716369628906	2	473.271824	944.529095	0.59822	0.00028312	-0.37881	-0.00017928	0.2194	0.00010384	473.2713192703895	24.502	1.3124	24.502	24.146	25.459	0					42	26	4	0	0	0	0.0047071	1	8592	8592		159.28	37.1	1	4221300			3534	195	2099	2110	3598	3598					0.05461169926184084
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2715148925781	2	473.271824	944.529095	-0.50423	-0.00023864	0.067113	3.1763E-05	-0.43712	-0.00020688	473.27180769920255	24.347	0.25958	24.347	24.22	24.48	0					13	6	3	0	0	0	0.0047071	1	7567	7567		159.28	42.372	1	921610			3535	195	2099	2110	3599	3599					0.05461169926184084
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2713317871094	2	473.271824	944.529095	-2.5148	-0.0011902	1.7537	0.00082996	-0.76113	-0.00036022	473.27262576108257	24.337	0.2605	24.337	24.206	24.467	0					12	6	3	0	0	0	0.011389	1	7578	7578		138.06	26.414	1	835600			3536	195	2099	2110	3600	3600					0.05461169926184084
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2716369628906	2	473.271824	944.529095	0.65478	0.00030989	-1.2858	-0.00060852	-0.63098	-0.00029863	473.271177331549	24.471	0.41027	24.471	24.312	24.723	0					19	8	3	0	0	0	0.0023831	1	8456	8456		172.25	24.206	1	4788800			3537	195	2099	2110	3601	3601					0.05461169926184084
ASVPAGIAK	9	Unmodified	_ASVPAGIAK_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant;MXRA5|p.S828Qfs*8|1|0.12|ENSG00000101825|chrX:3323204-3323204|G/-|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.2453308105469	2	407.245078	812.475603	0.64356	0.00026209	0.10617	4.3238E-05	0.74974	0.00030533	407.24507276297294	23.201	0.14351	23.201	23.107	23.25	0					6	3	2	0	0	0	0.17854	1	7636	7636		64.207	8.7031	1	82985			3538	2136	2100	2111	3602	3602					0.06186417214314588
ASVPAQAPK	9	Unmodified	_ASVPAQAPK_					0	0	0		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.7476501464844	2	434.747985	867.481417	-0.82817	-0.00036005	0.49764	0.00021635	-0.33053	-0.0001437	434.74813923892424	18.801	0.21828	18.801	18.653	18.871	0					17	7	3	0	0	0	0.16002	1	4995	4995		66.429	8.618	1	188120			3539	5449	2101	2112	3603	3603					0.0423751572599258
ASVPAQAPK	9	Unmodified	_ASVPAQAPK_					0	0	0		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.747802734375	2	434.747985	867.481417	-0.57541	-0.00025016	0.13796	5.998E-05	-0.43745	-0.00019018	434.7480570836692	18.881	0.22237	18.881	18.676	18.899	0					9	5	2	0	0	0	0.30951	1	4994	4994		49.442	5.3247	1	90321			3540	5449	2101	2112	3604	3604					0.0423751572599258
ASVQVLNKW	9	Unmodified	_ASVQVLNKW_					0	0	0		ANKRD27|p.R875W|1|0.3|ENSG00000105186|chr19:32604295-32604295|G/A|missense_variant	ANKRD27|p.R875W|1|0.3|ENSG00000105186|chr19:32604295-32604295|G/A|missense_variant	ANKRD27|p.R875W|1|0.3|ENSG00000105186|chr19:32604295-32604295|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.8648681640625	3	348.86607	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.819	1	17.819	17.319	18.319	0								0	0	0	0.35507	1	4326	4326		18.262	2.2553	1				3541	157	2102	2113	3605	3605					0.056334491971938405
ASVSGTNVK	9	Unmodified	_ASVSGTNVK_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.73492431640625	2	431.735074	861.455596	0.75715	0.00032689	-1.0164	-0.00043882	-0.25927	-0.00011194	431.73443128463606	16.624	0.21749	16.624	16.534	16.752	0					6	5	2	0	0	0	0.070005	1	4555	4555		88.177	22.712	1	237920			3542	4347	2103	2114	3606	3606					0.019326214837178668
ASVSLLFGAL	10	Unmodified	_ASVSLLFGAL_					0	0	0			REV__nc|ENSG00000137103|A6NDV4-3|TMEM8B	REV__nc|ENSG00000137103|A6NDV4-3|TMEM8B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.28729248046875	2	489.286943	976.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.739	1	39.739	39.239	40.239	0								0	0	0	0.40862	1	15728	15728		27.882	1.0861	1		+		3543	14902	2104	2115	3607	3607					0.07011528591374372
ASVSSPSQTMQ	11	Unmodified	_ASVSSPSQTMQ_					0	0	0			REV__nc|ENSG00000278857|P01611|IGKV1D-12	REV__nc|ENSG00000278857|P01611|IGKV1D-12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7573852539062	2	561.75842	1121.50229	1.7907	0.001006	-2.3223	-0.0013046	-0.53153	-0.00029859	561.7575256086828	34.973	1.7479	34.973	33.989	35.737	0					43	35	3	0	0	0	0.25663	1	13446	13446		67.494	3.2864	1	730920	+		3544	21226	2105	2116	3608	3608					-0.05360306747297727
ASVSSSVAK	9	Unmodified	_ASVSSSVAK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.230224609375	2	418.229625	834.444697	0.45836	0.0001917	0.44937	0.00018794	0.90772	0.00037964	418.2298572010319	16.921	0.098862	16.921	16.83	16.929	0					4	2	2	0	0	0	0.28897	1	4673	4673		51.193	17.02	1	117000			3545	6102	2106	2117	3609	3609					0.020852191094377304
ASVSSSVAK	9	Unmodified	_ASVSSSVAK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.2294921875	2	418.229625	834.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.928	1	16.928	16.428	17.428	0								0	0	0	0.18645	1	4685	4685		52.937	1.744	1				3546	6102	2106	2117	3610	3610					0.020852191094377304
ASVSSSVAK	9	Unmodified	_ASVSSSVAK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	418.22943115234375	2	418.229625	834.444697	0.060112	2.514E-05	-0.53979	-0.00022576	-0.47968	-0.00020062	418.2294476490983	16.871	0.35023	16.871	16.63	16.98	0					12	7	3	0	0	0	0.085655	1	4898	4898		82.75	38.634	1	267240			3547	6102	2106	2117	3611	3611					0.020852191094377304
ASVSSSVAK	9	Unmodified	_ASVSSSVAK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.2296142578125	2	418.229625	834.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.829	1	16.829	16.329	17.329	0								0	0	0	0.080575	1	4741	4741		77.318	34.921	1				3548	6102	2106	2117	3612	3612					0.020852191094377304
ASVSTVLTSK	10	Unmodified	_ASVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7838439941406	2	496.784764	991.554975	-0.059325	-2.9472E-05	-1.4845	-0.00073749	-1.5438	-0.00076696	496.78390711234533	28.029	0.17053	28.029	27.948	28.119	0					10	6	2	0	0	0	0.30252	1	8706	8706		66.962	20.99	1	79856			3549	7254	2107	2118	3613	3613					0.05886019377805951
ASVSTVLTSK	10	Unmodified	_ASVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7845458984375	2	496.784764	991.554975	-0.33147	-0.00016467	-0.4301	-0.00021367	-0.76157	-0.00037833	496.7844708279189	28.327	0.33086	28.327	28.195	28.526	0					21	8	3	0	0	0	0.013123	1	9987	9987		131.12	52.852	1	470030			3550	7254	2107	2118	3614	3614					0.05886019377805951
ASVSTVLTSK	10	Unmodified	_ASVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7845458984375	2	496.784764	991.554975	-1.1683	-0.00058041	0.6543	0.00032504	-0.51404	-0.00025537	496.78501572046747	28.049	0.16817	28.049	27.987	28.155	0					14	6	3	0	0	0	0.42408	1	8999	8999		53.597	27.533	1	244360			3551	7254	2107	2118	3615	3615					0.05886019377805951
ASVSTVLTSK	10	Unmodified	_ASVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.78460693359375	2	496.784764	991.554975	0.76262	0.00037886	-1.5966	-0.00079315	-0.83395	-0.0004143	496.7839926308758	28.323	0.35909	28.323	28.173	28.532	0					22	7	4	0	0	0	0.0077833	1	10357	10357		154.01	65.834	1	1440800			3552	7254	2107	2118	3616	3616					0.05886019377805951
ASVSTVLTSK	10	Unmodified	_ASVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7845458984375	2	496.784764	991.554975	0.15116	7.5096E-05	-0.47519	-0.00023607	-0.32403	-0.00016097	496.7844568703915	28.107	0.12751	28.107	28.032	28.159	0					9	3	3	0	0	0	0.073361	1	9279	9279		101.46	37.926	1	185190			3553	7254	2107	2118	3617	3617					0.05886019377805951
ASVSTVLTSK	10	Unmodified	_ASVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.78448486328125	2	496.784764	991.554975	-2.3325	-0.0011587	1.6101	0.00079987	-0.72238	-0.00035887	496.78551414251376	28.112	0.22053	28.112	28.02	28.24	0					10	5	3	0	0	0	0.057264	1	9286	9286		106.88	45.189	1	212110			3554	7254	2107	2118	3618	3618					0.05886019377805951
ASVSVYSLLTR	11	Unmodified	_ASVSVYSLLTR_					0	0	0			REV__PCDHGB7|p.S502L|1|0.45|ENSG00000254122|chr5:141419364-141419364|C/T|missense_variant	REV__PCDHGB7|p.S502L|1|0.45|ENSG00000254122|chr5:141419364-141419364|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.2273254394531	3	399.227556	1194.66084	0.92911	0.00037093	-1.5993	-0.00063848	-0.67019	-0.00026756	399.22700180522077	20.659	0.34	20.659	20.564	20.904	0					19	7	5	0	0	0	0.69004	1	6457	6457		28.577	0.93281	1	1955100	+		3555	21347	2108	2119	3619	3619					0.0712935522326461
ASVTQLLPQ	9	Unmodified	_ASVTQLLPQ_					0	0	0			REV__ENST00000466084.1_1_3:44959495-44960555:-|nuORF	REV__ENST00000466084.1_1_3:44959495-44960555:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7745361328125	2	478.7742	955.533846	-0.26089	-0.00012491	-0.27988	-0.000134	-0.54077	-0.00025891	478.7740204210199	13.938	0.22393	13.938	13.82	14.044	0					17	10	2	0	0	0	0.25716	1	2927	2927		54.776	0	1	317650	+		3556	19416	2109	2120	3620	3620					0.054300540689382615
ASVVAIDNK	9	Unmodified	_ASVVAIDNK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.758056640625	2	458.758549	915.502546	-0.4149	-0.00019034	-0.2089	-9.5835E-05	-0.6238	-0.00028617	458.75836517165817	23.779	0.21568	23.779	23.715	23.931	0					12	8	2	0	0	0	0.063171	1	6934	6934		90.601	28.493	1	77074			3557	2190	2110	2121	3621	3621					0.04141481034844219
ASVVAIDNK	9	Unmodified	_ASVVAIDNK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7581787109375	2	458.758549	915.502546	-0.65602	-0.00030095	-0.12536	-5.7511E-05	-0.78138	-0.00035847	458.7585080728	24.13	0.27091	24.13	23.949	24.22	0					13	6	4	0	0	0	0.0088974	1	8073	8073		143.37	63.661	1	477930			3558	2190	2110	2121	3622	3622					0.04141481034844219
ASVVAIDNK	9	Unmodified	_ASVVAIDNK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7582702636719	2	458.758549	915.502546	-0.96441	-0.00044243	0.45612	0.00020925	-0.50829	-0.00023318	458.75876052680985	23.994	0.3282	23.994	23.768	24.096	0					19	11	2	0	0	0	0.076532	1	7219	7219		85.862	17.075	1	330220			3559	2190	2110	2121	3623	3623					0.04141481034844219
ASVVAIDNK	9	Unmodified	_ASVVAIDNK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.75823974609375	2	458.758549	915.502546	0.72223	0.00033133	-1.1372	-0.00052168	-0.41493	-0.00019035	458.75787671498756	24.205	0.61426	24.205	23.796	24.41	0					24	12	4	0	0	0	0.020674	1	8381	8381		120.87	24.678	1	1658300			3560	2190	2110	2121	3624	3624					0.04141481034844219
ASVVAIDNK	9	Unmodified	_ASVVAIDNK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7582092285156	2	458.758549	915.502546	-0.71344	-0.0003273	0.38685	0.00017747	-0.32659	-0.00014982	458.75859502985026	24.037	0.11722	24.037	23.979	24.096	0					4	2	2	0	0	0	0.04067	1	8375	8375		98.582	34.375	1	61671			3561	2190	2110	2121	3625	3625					0.04141481034844219
ASVVAIDNK	9	Unmodified	_ASVVAIDNK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.75830078125	2	458.758549	915.502546	-2.6388	-0.0012106	2.2892	0.0010502	-0.34961	-0.00016039	458.7598454122386	23.885	0.18124	23.885	23.777	23.958	0					6	4	2	0	0	0	0.056004	1	7372	7372		93.143	36.422	1	36696			3562	2190	2110	2121	3626	3626					0.04141481034844219
ASVVFNLLR	9	Unmodified	_ASVVFNLLR_					0	0	0		nc|ENSG00000272395|K9M1U5-4|IFNL4;nc|ENSG00000272395|K9M1U5-3|IFNL4;nc|ENSG00000272395|K9M1U5|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.20611572265625	3	340.206315	1017.59712	-0.71391	-0.00024288	0.09133	3.1071E-05	-0.62258	-0.00021181	340.2063829971013	28.963	0.29423	28.963	28.769	29.063	0					19	11	2	0	0	0	0.61124	1	9340	9340		17.468	0.10304	1	220180			3563	11801	2111	2122	3627	3627					0.08902039576855714
ASVVGPMLGPV	11	Unmodified	_ASVVGPMLGPV_					0	0	0			REV__ENST00000609682.1_1_3:101395365-101395752:+|nuORF	REV__ENST00000609682.1_1_3:101395365-101395752:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.8611145019531	3	342.859927	1025.55795	3.0242	0.0010369	0.51364	0.00017611	3.5378	0.001213	342.86005593320243	14.583	0.26898	14.583	14.525	14.794	0					6	5	2	0	0	0	0.7098	1	3676	3676		29.551	8.6038	1	639900	+		3564	20634	2112	2123	3628	3628					0.04619571230955444
ASVWPKKGT	9	Unmodified	_ASVWPKKGT_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1;ENST00000464310.2_1_10:74769532-74774020:-|nuORF	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.1855773925781	3	325.187032	972.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.215	1	14.215	13.715	14.715	0								0	0	0	0.31838	1	3416	3416		31.53	3.6476	1				3565	3291	2113	2124	3629	3629					0.0518977765142381
ASVYQPLKK	9	Unmodified	_ASVYQPLKK_					0	0	0		nc|ENSG00000204178|Q8N5G2-2|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENSG00000204178|ENST00000374343|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.3055419921875	2	517.305667	1032.59678	0.36722	0.00018997	-0.14261	-7.3774E-05	0.22461	0.00011619	517.305556780548	21.873	0.1208	21.873	21.794	21.915	0					6	3	2	0	0	0	0.18505	1	6104	6104		56.434	20.816	1	145640			3566	7678	2114	2125	3630	3630					0.08178619856994374
ASVYQPLKK	9	Unmodified	_ASVYQPLKK_					0	0	0		nc|ENSG00000204178|Q8N5G2-2|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENSG00000204178|ENST00000374343|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.2061462402344	3	345.206203	1032.59678	0.68459	0.00023632	-0.60931	-0.00021034	0.075279	2.5987E-05	345.2059519256372	22.212	0.23196	22.212	22.075	22.307	0					10	5	2	0	0	0	0.30841	1	7175	7175		49.536	16.786	1	495880			3567	7678	2114	2125	3631	3631					0.08178619856994374
ASVYQPLKK	9	Unmodified	_ASVYQPLKK_					0	0	0		nc|ENSG00000204178|Q8N5G2-2|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENSG00000204178|ENST00000374343|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.3057861328125	2	517.305667	1032.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.227	1	22.227	21.727	22.727	0								0	0	0	0.029433	1	7188	7188		79.713	12.219	1				3568	7678	2114	2125	3632	3632					0.08178619856994374
ASVYQPLKK	9	Unmodified	_ASVYQPLKK_					0	0	0		nc|ENSG00000204178|Q8N5G2-2|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENSG00000204178|ENST00000374343|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	nc|ENSG00000204178|Q8N5G2-2|MACO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.3055419921875	2	517.305667	1032.59678	-0.45602	-0.0002359	1.4913	0.00077144	1.0353	0.00053554	517.3058396830927	22.102	0.21545	22.102	21.989	22.204	0					13	4	4	0	0	0	0.037712	1	7418	7418		85.161	0.2453	1	503060			3569	7678	2114	2125	3633	3633					0.08178619856994374
ASWGGTIEK	9	Unmodified	_ASWGGTIEK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.742919921875	2	474.742899	947.471246	-0.24085	-0.00011434	-0.35676	-0.00016937	-0.5976	-0.00028371	474.7427247699993	27.574	0.26109	27.574	27.492	27.753	0					14	8	2	0	0	0	0.19605	1	8501	8501		62.107	1.1355	1	412170			3570	4616	2115	2126	3634	3634					-0.004590919992324416
ASWGGTIEK	9	Unmodified	_ASWGGTIEK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7427978515625	2	474.742899	947.471246	-0.46341	-0.00022	0.36432	0.00017296	-0.099089	-4.7042E-05	474.7431171876828	27.788	0.42937	27.788	27.692	28.121	0					17	10	2	0	0	0	0.026848	1	9753	9753		112.11	34.79	1	1998200			3571	4616	2115	2126	3635	3635					-0.004590919992324416
ASWGGTIEK	9	Unmodified	_ASWGGTIEK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.74285888671875	2	474.742899	947.471246	-0.55592	-0.00026392	0.20979	9.9595E-05	-0.34613	-0.00016432	474.7429705601476	27.568	0.19138	27.568	27.485	27.676	0					13	6	3	0	0	0	0.48623	1	8782	8782		33.922	7.2287	1	209200			3572	4616	2115	2126	3636	3636					-0.004590919992324416
ASWGGTIEK	9	Unmodified	_ASWGGTIEK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7428894042969	2	474.742899	947.471246	0.6142	0.00029159	1.105	0.00052461	1.7192	0.00081619	474.74292120547517	27.798	0.3144	27.798	27.649	27.964	0					14	6	3	0	0	0	0.037924	1	10127	10127		101.25	24.478	1	979280			3573	4616	2115	2126	3637	3637					-0.004590919992324416
ASWGGTIEK	9	Unmodified	_ASWGGTIEK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.74261474609375	2	474.742899	947.471246	-0.52952	-0.00025138	0.20233	9.6054E-05	-0.32719	-0.00015533	474.74297134174947	27.838	0.3118	27.838	27.73	28.042	0					14	6	3	0	0	0	0.012936	1	10117	10117		134.77	47.069	1	1452100			3574	4616	2115	2126	3638	3638					-0.004590919992324416
ASWGGTIEK	9	Unmodified	_ASWGGTIEK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.74267578125	2	474.742899	947.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.762	1	27.762	27.262	28.262	0								0	0	0	0.0075199	1	9973	9973		112.41	27.051	1				3575	4616	2115	2126	3639	3639					-0.004590919992324416
ASWPTHPHR	9	Unmodified	_ASWPTHPHR_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENST00000570365.1_1_17:3970518-3976036:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.180419921875	3	363.517663	1087.53116	1.1058	0.00040199	-3.1702	-0.0011524	-2.0644	-0.00075044	363.51634469935385	20.516	0.46564	20.516	20.328	20.793	0					21	9	4	0	0	0	0.50858	1	6504	6504		31.53	3.4483	1	2367500			3576	1529	2116	2127	3640	3640					-0.009103565453642659
ASWQFGLNYMY	11	Oxidation (M)	_ASWQFGLNYM(Oxidation (M))Y_		ASWQFGLNYM(1)Y		ASWQFGLNYM(55)Y	0	0	1		tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.87310791015625	3	465.872784	1394.59652	-0.49449	-0.00023037	1.0794	0.00050284	0.58487	0.00027248	465.87327217243546	16.961	0.11361	16.961	16.891	17.005	0					4	2	2	0	0	0	0.36734	1	4812	4812		55.084	15.211	1	119370			3577	22732	2117	2128	3641	3641		821			-0.08499167925174334
ASYENVRAK	9	Unmodified	_ASYENVRAK_					0	0	0		ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.5172424316406	3	346.517329	1036.53016	0.39317	0.00013624	-0.95725	-0.0003317	-0.56408	-0.00019546	346.51701703062406	17.149	0.10499	17.149	17.109	17.214	0					5	3	2	0	0	0	0.4966	1	4054	4054		32.812	1.2826	1	53247			3578	3539	2118	2129	3642	3642					0.013353842950891703
ASYENVRAK	9	Unmodified	_ASYENVRAK_					0	0	0		ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2728881835938	2	519.272355	1036.53016	0.56405	0.00029289	0.61213	0.00031786	1.1762	0.00061076	519.2726871423988	17.17	0.10396	17.17	17.099	17.203	0					9	3	3	0	0	0	0.040209	1	4033	4033		93.143	47.171	1	746640			3579	3539	2118	2129	3643	3643					0.013353842950891703
ASYENVRAK	9	Unmodified	_ASYENVRAK_					0	0	0		ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2724609375	2	519.272355	1036.53016	0.060227	3.1274E-05	0.70115	0.00036409	0.76138	0.00039536	519.2727374678942	17.497	0.36033	17.497	17.374	17.735	0					25	9	4	0	0	0	0.01077	1	4933	4933		123.21	32.838	1	3079400			3580	3539	2118	2129	3644	3644					0.013353842950891703
ASYENVRAK	9	Unmodified	_ASYENVRAK_					0	0	0		ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	ENSG00000128340|ENST00000249071|RAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.27294921875	2	519.272355	1036.53016	-0.3106	-0.00016129	1.3787	0.00071594	1.0681	0.00055465	519.2731068263029	17.429	0.20595	17.429	17.377	17.583	0					7	4	3	0	0	0	0.026656	1	5181	5181		106.68	29.909	1	1574700			3581	3539	2118	2129	3645	3645					0.013353842950891703
ASYGRDAFAK	10	Unmodified	_ASYGRDAFAK_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.272705078125	2	543.272355	1084.53016	1.8467	0.0010033	-0.26569	-0.00014434	1.5811	0.00085894	543.272482685044	21.747	0.13065	21.747	21.683	21.813	0					7	4	2	0	0	0	0.33468	1	6045	6045		63.426	4.6445	1	57563			3582	6618	2119	2130	3646	3646					-0.00872615704929558
ASYGRDAFAK	10	Unmodified	_ASYGRDAFAK_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.272705078125	2	543.272355	1084.53016	1.881	0.0010219	-1.4767	-0.00080224	0.40431	0.00021965	543.2716993460056	22.037	0.26103	22.037	21.96	22.221	0					11	6	3	0	0	0	0.16745	1	7110	7110		83.647	32.312	1	790470			3583	6618	2119	2130	3647	3647					-0.00872615704929558
ASYGSTTTK	9	Unmodified	_ASYGSTTTK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2240295410156	2	458.224539	914.434526	-0.40818	-0.00018704	-0.77567	-0.00035543	-1.1839	-0.00054247	458.2242602382344	15.113	0.16016	15.113	15.044	15.204	0					9	6	2	0	0	0	0.44593	1	3217	3217		37.812	11.119	1	126080			3584	1866	2120	2131	3648	3648					-0.026113886158213973
ASYGSTTTK	9	Unmodified	_ASYGSTTTK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.22430419921875	2	458.224539	914.434526	-0.64495	-0.00029553	-0.099598	-4.5638E-05	-0.74455	-0.00034117	458.22450200622825	15.381	0.26057	15.381	15.23	15.49	0					20	6	5	0	0	0	0.017421	1	3956	3956		126.24	70.738	1	1243200			3585	1866	2120	2131	3649	3649					-0.026113886158213973
ASYGSTTTK	9	Unmodified	_ASYGSTTTK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.224365234375	2	458.224539	914.434526	-0.9865	-0.00045204	0.4268	0.00019557	-0.55969	-0.00025647	458.22482898279117	15.118	0.19478	15.118	15.051	15.246	0					14	8	2	0	0	0	0.10506	1	3382	3382		78.264	30.348	1	312180			3586	1866	2120	2131	3650	3650					-0.026113886158213973
ASYGSTTTK	9	Unmodified	_ASYGSTTTK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2250061035156	2	458.224539	914.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.15	1	15.15	14.65	15.65	0								0	0	0	0.077333	1	3337	3337		78.264	30.348	1				3587	1866	2120	2131	3651	3651					-0.026113886158213973
ASYGSTTTK	9	Unmodified	_ASYGSTTTK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2245788574219	2	458.224539	914.434526	-2.6453	-0.0012121	2.0435	0.0009364	-0.60171	-0.00027572	458.22544352244194	15.155	0.19803	15.155	15.106	15.304	0					10	7	2	0	0	0	0.14578	1	3332	3332		68.846	18.822	1	216700			3588	1866	2120	2131	3652	3652					-0.026113886158213973
ASYGSTTTK	9	Unmodified	_ASYGSTTTK_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2243347167969	2	458.224539	914.434526	0.87982	0.00040315	-1.0773	-0.00049365	-0.19748	-9.0492E-05	458.224076155543	15.354	0.40113	15.354	15.195	15.596	0					20	8	4	0	0	0	0.0023831	1	4015	4015		172.25	108.94	1	1978200			3589	1866	2120	2131	3653	3653					-0.026113886158213973
ASYGVSKGK	9	Unmodified	_ASYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.7449951171875	2	448.745442	895.476331	-0.3025	-0.00013575	-0.40237	-0.00018056	-0.70487	-0.00031631	448.74525534787466	14.555	0.55163	14.555	14.477	15.029	0					53	23	5	0	0	0	0.061298	1	2994	2994		91.265	27.959	1	10213000			3590	5043	2121	2132	3654	3654					0.024412118633904356
ASYGVSKGK	9	Unmodified	_ASYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.7456359863281	2	448.745442	895.476331	-0.45458	-0.00020399	-0.57293	-0.0002571	-1.0275	-0.00046109	448.7457470680601	14.815	1.9796	14.815	14.682	16.662	0					81	47	5	0	0	0	0.019258	1	3698	3698		123.21	61.101	1	72580000			3591	5043	2121	2132	3655	3655					0.024412118633904356
ASYGVSKGK	9	Unmodified	_ASYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.74566650390625	2	448.745442	895.476331	-1.1791	-0.00052912	0.83067	0.00037276	-0.34844	-0.00015636	448.74580586406415	14.556	0.24835	14.556	14.486	14.734	0					32	10	4	0	0	0	0.019258	1	3158	3158		123.21	38.047	1	2751800			3592	5043	2121	2132	3656	3656					0.024412118633904356
ASYGVSKGK	9	Unmodified	_ASYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.7452087402344	2	448.745442	895.476331	0.64296	0.00028853	-1.426	-0.00063989	-0.78299	-0.00035136	448.744947199944	14.789	0.95492	14.789	14.68	15.634	0					31	19	2	0	0	0	0.0088974	1	3921	3921		143.37	63.923	1	32306000			3593	5043	2121	2132	3657	3657					0.024412118633904356
ASYGVSKGK	9	Unmodified	_ASYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.7452087402344	2	448.745442	895.476331	-0.22426	-0.00010064	-0.37435	-0.00016799	-0.59861	-0.00026862	448.7453002555214	14.772	0.70297	14.772	14.714	15.417	0					28	14	4	0	0	0	0.037712	1	3913	3913		101.46	41.342	1	5069100			3594	5043	2121	2132	3658	3658					0.024412118633904356
ASYIKEKGK	9	Unmodified	_ASYIKEKGK_					0	0	0			REV__nc|ENSG00000198431|Q16881-7|TXNRD1	REV__nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.8656921386719	3	341.865958	1022.57605	0.50872	0.00017392	-0.67839	-0.00023192	-0.16967	-5.8004E-05	341.8656743258129	18.72	1.5188	18.72	17.883	19.402	0					56	36	3	0	0	0	0.47473	1	5534	5534		35.152	5.982	1	796800	+		3595	17398	2122	2133	3659	3659					0.06566029477335178
ASYLADKKK	9	Unmodified	_ASYLADKKK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2952880859375	2	512.295299	1022.57605	1.055	0.00054049	-1.2451	-0.00063788	-0.19011	-9.7391E-05	512.2948192636526	18.725	0.77887	18.725	18.037	18.816	0					32	18	3	0	0	0	0.095583	1	5542	5542		64.207	5.4253	1	609710			3596	6773	2123	2134	3660	3660					0.06566029477323809
ASYLADKKK	9	Unmodified	_ASYLADKKK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2950439453125	2	512.295299	1022.57605	1.253	0.00064189	-1.5551	-0.00079665	-0.30209	-0.00015476	512.294669544707	18.652	0.89532	18.652	17.988	18.883	0					35	18	3	0	0	0	0.1424	1	5775	5775		53.351	7.3792	1	1185600			3597	6773	2123	2134	3661	3661					0.06566029477323809
ASYLKSQS	8	Unmodified	_ASYLKSQS_					0	0	0		nc|ENSG00000244687|Q13404-7|UBE2V1;nc|ENSG00000244687|Q13404-2|UBE2V1	nc|ENSG00000244687|Q13404-7|UBE2V1	nc|ENSG00000244687|Q13404-7|UBE2V1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2292785644531	2	442.229625	882.444697	0.57351	0.00025362	-1.3469	-0.00059564	-0.77339	-0.00034202	442.2291473548064	23.054	0.21536	23.054	22.93	23.145	0					8	5	2	0	0	0	0.64144	1	7592	7592		42.396	8.2236	1	145160			3598	11787	2124	2135	3662	3662					-0.0012278089055826058
ASYLQRRR	8	Unmodified	_ASYLQRRR_					0	0	0			REV__ENST00000493268.1_1_7:154595624-154650193:+|nuORF	REV__ENST00000493268.1_1_7:154595624-154650193:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.53790283203125	3	350.536946	1048.58901	0.3288	0.00011526	2.2859	0.00080128	2.6147	0.00091653	350.5377872716831	26.193	0.2091	26.193	26.084	26.293	0					7	4	2	0	0	0	0.77246	1	9356	9356		24.203	0	1	101950	+		3599	14568	2125	2136	3663	3663					0.06665905380077675
ASYMGKENLK	10	Unmodified	_ASYMGKENLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.7899169921875	2	570.789524	1139.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.629	1	21.629	21.129	22.129	0								0	0	0	0.13763	1	6903	6903		72.243	10.136	1				3600	1272	2126	2137	3664	3664					0.0002946439167317294
ASYMGKENLK	10	Unmodified	_ASYMGKENLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.7901000976562	2	570.789524	1139.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.407	1	21.407	20.907	21.907	0								0	0	0	0.30539	1	6200	6200		50.034	7.1692	1				3601	1272	2126	2137	3665	3665					0.0002946439167317294
ASYMGKENLK	10	Unmodified	_ASYMGKENLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7899169921875	2	570.789524	1139.56449	3.4153	0.0019494	-2.5433	-0.0014517	0.87201	0.00049773	570.787955540949	21.514	0.21585	21.514	21.404	21.62	0					7	4	2	0	0	0	0.21577	1	7029	7029		77.533	14.227	1	749940			3602	1272	2126	2137	3666	3666					0.0002946439167317294
ASYMGKENLKK	11	Unmodified	_ASYMGKENLKK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.56060791015625	3	423.560429	1267.65946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.609	1	18.609	18.109	19.109	0								0	0	0	0.27395	1	5602	5602		55.721	17.91	1				3603	1272	2127	2138	3667	3667					0.03633397862859056
ASYPPFLF	8	Unmodified	_ASYPPFLF_					0	0	0		ENST00000426981.5_2_2:128396458-128396839:-|nuORF	ENST00000426981.5_2_2:128396458-128396839:-|nuORF	ENST00000426981.5_2_2:128396458-128396839:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.24176025390625	2	471.242004	940.469455	-1.3608	-0.00064127	-0.29039	-0.00013684	-1.6512	-0.00077811	471.24195257595466	29.231	0.40709	29.231	29.084	29.491	0					28	16	3	0	0	0	0.6282	1	9465	9465		44.531	3.1045	1	195230			3604	9452	2128	2139	3668	3668					-0.0031610101718797523
ASYPPTDPLQ	10	Unmodified	_ASYPPTDPLQ_					0	0	0			REV__ENSG00000166268|ENST00000552032|MYRFL	REV__ENSG00000166268|ENST00000552032|MYRFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7647705078125	2	544.766571	1087.51859	0.38087	0.00020749	-3.4048	-0.0018548	-3.0239	-0.0016473	544.7645730465586	19.911	0.16022	19.911	19.811	19.971	0					8	3	3	0	0	0	0.63224	1	6106	6106		30.318	1.1477	1	349570	+		3605	16103	2129	2140	3669	3669					-0.021668575189096373
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.8081359863281	2	504.808042	1007.60153	-0.067125	-3.3885E-05	-0.17655	-8.9123E-05	-0.24367	-0.00012301	504.8079193298443	23.294	0.23215	23.294	23.21	23.442	0					14	6	3	0	0	0	0.0071744	1	6706	6706		132.76	66.329	1	871940			3606	4434	2130	2141	3670	3670					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.8745422363281	3	336.874454	1007.60153	0.96896	0.00032642	-1.1559	-0.0003894	-0.18695	-6.2978E-05	336.87408307973294	23.625	0.18268	23.625	23.538	23.721	0					11	4	3	0	0	0	0.090954	1	7839	7839		81.525	40.098	1	590990			3607	4434	2130	2141	3671	3671					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.8079528808594	2	504.808042	1007.60153	-0.052121	-2.6311E-05	-0.10443	-5.272E-05	-0.15656	-7.9031E-05	504.80791867963603	23.601	0.36031	23.601	23.515	23.875	0					20	8	4	0	0	0	5.3366E-08	1	7841	7841		195.05	120.79	1	5208800			3608	4434	2130	2141	3672	3672					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.87445068359375	3	336.874454	1007.60153	3.673	0.0012373	-2.9738	-0.0010018	0.69919	0.00023554	336.8733970453311	23.349	0.15923	23.349	23.283	23.442	0					7	5	2	0	0	0	0.41958	1	7012	7012		40.058	10.888	1	63163			3609	4434	2130	2141	3673	3673					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.8077697753906	2	504.808042	1007.60153	-0.80209	-0.0004049	0.31793	0.00016049	-0.48415	-0.0002444	504.80811936115896	23.344	0.15569	23.344	23.276	23.431	0					16	5	4	0	0	0	0.0066803	1	7004	7004		134.77	87.108	1	1219000			3610	4434	2130	2141	3674	3674					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.8743591308594	3	336.874454	1007.60153	0.37613	0.00012671	-0.61787	-0.00020814	-0.24174	-8.1435E-05	336.874210517852	23.57	0.16674	23.57	23.462	23.629	0					6	3	2	0	0	0	0.14578	1	8148	8148		68.846	31.687	1	861230			3611	4434	2130	2141	3675	3675					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.80755615234375	2	504.808042	1007.60153	0.11419	5.7643E-05	-0.59101	-0.00029835	-0.47683	-0.00024071	504.807476126144	23.392	0.14875	23.392	23.297	23.446	0					8	3	3	0	0	0	0.13901	1	7120	7120		55.084	19.466	1	419300			3612	4434	2130	2141	3676	3676					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.8070983886719	2	504.808042	1007.60153	-1.9986	-0.0010089	1.6527	0.00083431	-0.34588	-0.0001746	504.80876815531644	23.381	0.274	23.381	23.284	23.558	0					12	6	3	0	0	0	0.0046931	1	7118	7118		143.37	98.996	1	1350000			3613	4434	2130	2141	3677	3677					0.09803503999751229
ASYTKIVVK	9	Unmodified	_ASYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.807861328125	2	504.808042	1007.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.546	1	23.546	23.046	24.046	0								0	0	0	0.009791	1	7999	7999		155.58	93.477	1				3614	4434	2130	2141	3678	3678					0.09803503999751229
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.887451171875	3	415.88731	1244.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.551	1	19.551	19.051	20.051	0								0	0	0	0.44222	1	5077	5077		27.644	2.5179	1				3615	1383;1209	2131	2142	3679	3679					0.027567648436161107
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	623.3275756835938	2	623.327328	1244.6401	0.18175	0.00011329	-0.016973	-1.058E-05	0.16478	0.00010271	623.3273321212075	19.522	0.1107	19.522	19.455	19.566	0					5	3	2	0	0	0	0.13149	1	5070	5070		73.841	29.464	1	126950			3616	1383;1209	2131	2142	3680	3680					0.027567648436161107
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	623.3274536132812	2	623.327328	1244.6401	0.56463	0.00035195	-0.65563	-0.00040867	-0.091005	-5.6726E-05	623.3270697231403	19.86	0.14661	19.86	19.773	19.92	0					8	3	3	0	0	0	0.052273	1	6079	6079		96.665	45.472	1	1168500			3617	1383;1209	2131	2142	3681	3681					0.027567648436161107
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	623.3277587890625	2	623.327328	1244.6401	0.72444	0.00045156	-0.56796	-0.00035402	0.15648	9.7537E-05	623.3267704092871	19.552	0.11382	19.552	19.473	19.586	0					8	3	3	0	0	0	0.049609	1	5305	5305		107.45	63.078	1	248190			3618	1383;1209	2131	2142	3682	3682					0.027567648436161107
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	623.3275756835938	2	623.327328	1244.6401	0.084217	5.2495E-05	0.18709	0.00011662	0.27131	0.00016911	623.3274609441772	19.701	0.16664	19.701	19.642	19.809	0					10	3	4	0	0	0	3.5544E-12	1	6285	6285		196.52	97.936	1	1118300			3619	1383;1209	2131	2142	3683	3683					0.027567648436161107
ASYVSPVLK	9	Unmodified	_ASYVSPVLK_					0	0	0		ENST00000533135.1_1_11:117079739-117089787:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF;PCSK7|p.R560Afs*51|1|0.18|ENSG00000160613|chr11:117208910-117208910|G/-|frameshift_variant;PCSK7|p.N663Tfs*9|1|0.18|ENSG00000160613|chr11:117206693-117206693|G/-|frameshift_variant;ENSG00000160613|ENST00000320934|PCSK7	ENST00000533135.1_1_11:117079739-117089787:-|nuORF	ENST00000533135.1_1_11:117079739-117089787:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2798156738281	2	482.279118	962.543683	3.4734	0.0016752	-3.5302	-0.0017026	-0.056836	-2.7411E-05	482.2773610842131	30.797	0.13759	30.797	30.719	30.857	0					8	4	2	0	0	0	0.19605	1	10141	10141		62.107	19.633	1	86440			3620	5375	2132	2143	3684	3684					0.06091242074319325
ASYVSPVLK	9	Unmodified	_ASYVSPVLK_					0	0	0		ENST00000533135.1_1_11:117079739-117089787:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF;PCSK7|p.R560Afs*51|1|0.18|ENSG00000160613|chr11:117208910-117208910|G/-|frameshift_variant;PCSK7|p.N663Tfs*9|1|0.18|ENSG00000160613|chr11:117206693-117206693|G/-|frameshift_variant;ENSG00000160613|ENST00000320934|PCSK7	ENST00000533135.1_1_11:117079739-117089787:-|nuORF	ENST00000533135.1_1_11:117079739-117089787:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2787780761719	2	482.279118	962.543683	-0.10337	-4.9854E-05	-0.43084	-0.00020778	-0.53421	-0.00025764	482.2788897788438	31.004	0.37251	31.004	30.909	31.281	0					11	8	2	0	0	0	0.095583	1	11660	11660		80.455	8.5771	1	530900			3621	5375	2132	2143	3685	3685					0.06091242074319325
ASYVVGQFA	9	Unmodified	_ASYVVGQFA_					0	0	0			REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.24212646484375	2	471.239993	940.465432	-0.19312	-9.1004E-05	3.9642	0.0018681	3.771	0.0017771	471.24172254530185	29.303	0.17749	29.303	29.148	29.326	0					7	4	2	0	0	0	0.47038	1	9797	9797		35.618	4.0885	1	41569	+		3622	15169	2133	2144	3686	3686					-0.007181905109064246
ATAAAAATAF	10	Unmodified	_ATAAAAATAF_					0	0	0		nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	nc|ENSG00000148584|Q9NQ94-5|A1CF	nc|ENSG00000148584|Q9NQ94-5|A1CF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.22601318359375	2	433.224342	864.434132	3.238	0.0014028	0.24853	0.00010767	3.4865	0.0015105	433.2245639847036	18.607	0.15957	18.607	18.537	18.697	0					11	5	3	0	0	0	0.37692	1	4883	4883		58.782	3.2778	1	393900			3623	4841	2134	2145	3687	3687					-0.003507635450205271
ATAAAGVLAA	10	Unmodified	_ATAAAGVLAA_					0	0	0		ENSG00000135063|ENST00000303068|ENTREP1	ENSG00000135063|ENST00000303068|ENTREP1	ENSG00000135063|ENST00000303068|ENTREP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.2345886230469	2	408.23471	814.454868	0.050602	2.0658E-05	-0.2568	-0.00010483	-0.2062	-8.4177E-05	408.23460208656047	19.091	0.21323	19.091	18.984	19.197	0					8	4	2	0	0	0	0.4943	1	5985	5985		45.952	0	1	893910			3624	3960	2135	2146	3688	3688					0.040218268346393415
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.28240966796875	2	500.282723	998.550893	-0.047854	-2.394E-05	-0.65573	-0.00032805	-0.70358	-0.00035199	500.28251957846965	22.125	0.20174	22.125	22.012	22.214	0					17	6	4	0	0	0	0.056425	1	6200	6200		102.06	31.245	1	471760			3625	4171	2136	2147	3689	3689					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.28265380859375	2	500.282723	998.550893	-0.15939	-7.9739E-05	-0.22719	-0.00011366	-0.38658	-0.0001934	500.28269460476207	22.423	0.23808	22.423	22.323	22.561	0					12	5	3	0	0	0	0.035268	1	7292	7292		112.3	34.978	1	1891100			3626	4171	2136	2147	3690	3690					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2828369140625	2	500.282723	998.550893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.16	1	22.16	21.66	22.66	0								0	0	0	0.16598	1	6480	6480		66.962	17.52	1				3627	4171	2136	2147	3691	3691					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2823486328125	2	500.282723	998.550893	-1.1224	-0.0005615	0.35554	0.00017787	-0.76681	-0.00038362	500.28285071594314	22.129	0.16937	22.129	22.059	22.228	0					8	5	2	0	0	0	0.080725	1	6470	6470		94.409	34.478	1	156380			3628	4171	2136	2147	3692	3692					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2825012207031	2	500.282723	998.550893	-0.61705	-0.0003087	-0.12354	-6.1805E-05	-0.74059	-0.00037051	500.2827347032505	22.341	0.26366	22.341	22.187	22.451	0					10	5	3	0	0	0	0.014531	1	7536	7536		122.94	32.162	1	765380			3629	4171	2136	2147	3693	3693					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.28240966796875	2	500.282723	998.550893	-2.1381	-0.0010696	1.8377	0.00091937	-0.30037	-0.00015027	500.2837103461486	22.195	0.14729	22.195	22.099	22.246	0					8	3	3	0	0	0	0.11999	1	6557	6557		84.817	14.001	1	488240			3630	4171	2136	2147	3694	3694					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2826232910156	2	500.282723	998.550893	2.9209	0.0014613	-3.7069	-0.0018545	-0.78598	-0.00039321	500.2811086933833	22.314	0.31451	22.314	22.207	22.521	0					18	6	5	0	0	0	0.014531	1	7416	7416		122.94	43.488	1	1842600			3631	4171	2136	2147	3695	3695					0.05155974674744357
ATAAAPVPSPV	11	Unmodified	_ATAAAPVPSPV_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7739562988281	2	490.7742	979.533846	-0.49949	-0.00024514	0.097526	4.7863E-05	-0.40196	-0.00019727	490.77435513427275	28.056	0.25493	28.056	27.953	28.208	0					12	6	3	0	0	0	0.33926	1	9873	9873		58.23	1.5977	1	275230			3632	11413	2137	2148	3696	3696					0.04326054068940266
ATAAAVAAVG	10	Unmodified	_ATAAAVAAVG_					0	0	0			REV__ENST00000491165.5_2_3:113396224-113415451:-|nuORF	REV__ENST00000491165.5_2_3:113396224-113415451:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.227294921875	2	401.226885	800.439217	0.60211	0.00024158	0.10866	4.3597E-05	0.71077	0.00028518	401.2269351412797	15.886	0.20629	15.886	15.735	15.941	0					12	9	2	0	0	0	0.40673	1	3527	3527		55.504	7.5886	1	55077	+		3633	19718	2138	2149	3697	3697					0.031015403176070322
ATAAAVVPEQ	10	Unmodified	_ATAAAVVPEQ_					0	0	0		BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant;BRINP2|p.A221Pfs*53|1|0.37|ENSG00000198797|chr1:177257372-177257372|G/-|frameshift_variant;ENSG00000198797|ENST00000361539|BRINP2	BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant	BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7556457519531	2	478.756007	955.497461	-0.2619	-0.00012539	-0.38507	-0.00018435	-0.64696	-0.00030974	478.7557693225525	14.899	0.7226	14.899	14.605	15.328	0					23	17	2	0	0	0	0.46128	1	3738	3738		49.536	1.8787	1	816020			3634	322	2139	2150	3698	3698					0.017931771722373924
ATAAKPVAAK	10	Unmodified	_ATAAKPVAAK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2843017578125	2	464.284734	926.554916	-0.6943	-0.00032235	-0.13854	-6.4321E-05	-0.83284	-0.00038668	464.2846799028052	13.552	0.11341	13.552	13.511	13.624	0					7	3	3	0	0	0	0.11048	1	3113	3113		93.598	29.39	1	337200			3635	5547	2140	2151	3699	3699					0.08870064168456793
ATAAKPVAAK	10	Unmodified	_ATAAKPVAAK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.28448486328125	2	464.284734	926.554916	-1.0584	-0.00049142	0.37156	0.00017251	-0.68689	-0.00031891	464.2847676769731	13.553	0.098577	13.553	13.493	13.591	0					4	2	2	0	0	0	0.092915	1	3328	3328		96.665	41.889	1	123960			3636	5547	2140	2151	3700	3700					0.08870064168456793
ATAALLRHK	9	Unmodified	_ATAALLRHK_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.80328369140625	2	490.803626	979.592698	-0.056388	-2.7675E-05	-0.52904	-0.00025965	-0.58542	-0.00028733	490.8033452695011	17.44	0.14142	17.44	17.354	17.495	0					13	5	3	0	0	0	0.014688	1	4151	4151		131.03	54.257	1	537830			3637	6267	2141	2152	3701	3701					0.10208575153933452
ATAALLRHK	9	Unmodified	_ATAALLRHK_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.8034973144531	2	490.803626	979.592698	-0.50436	-0.00024754	0.23809	0.00011686	-0.26627	-0.00013069	490.80379141451857	17.771	0.30635	17.771	17.685	17.992	0					19	7	4	0	0	0	0.021961	1	5065	5065		118.74	52.94	1	5015100			3638	6267	2141	2152	3702	3702					0.10208575153933452
ATAALLRHK	9	Unmodified	_ATAALLRHK_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.53826904296875	3	327.538176	979.592698	-0.66755	-0.00021865	1.1574	0.00037909	0.48985	0.00016044	327.5385141755285	17.491	0.094898	17.491	17.441	17.536	0					6	3	2	0	0	0	0.57706	1	4391	4391		39.253	24.388	1	74076			3639	6267	2141	2152	3703	3703					0.10208575153933452
ATAALLRHK	9	Unmodified	_ATAALLRHK_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.8033447265625	2	490.803626	979.592698	-0.72645	-0.00035654	0.10082	4.9483E-05	-0.62563	-0.00030706	490.80368396890987	17.727	0.11756	17.727	17.668	17.785	0					4	2	2	0	0	0	0.032052	1	5325	5325		107.01	51.503	1	996200			3640	6267	2141	2152	3704	3704					0.10208575153933452
ATAALNLGQ	9	Unmodified	_ATAALNLGQ_					0	0	0			REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.7373962402344	2	429.737617	857.460681	-0.51179	-0.00021993	0.20617	8.8601E-05	-0.30561	-0.00013133	429.737714489917	15.156	0.41231	15.156	14.893	15.306	0					21	8	3	0	0	0	0.14603	1	4026	4026		68.787	0	1	2478100	+		3641	16043	2142	2153	3705	3705					0.02624925346344753
ATAALNLGQ	9	Unmodified	_ATAALNLGQ_					0	0	0			REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.7373046875	2	429.737617	857.460681	0.95871	0.00041199	-1.6079	-0.00069098	-0.6492	-0.00027899	429.7368995033942	15.138	0.45793	15.138	14.927	15.385	0					19	9	3	0	0	0	0.030949	2	4066	4021;4066		108.09	14.081	1	1408100	+		3642	16043	2142	2153	3706;3707	3707					0.02624925346344753
ATAALNLGQ	9	Unmodified	_ATAALNLGQ_					0	0	0			REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7374267578125	2	429.737617	857.460681	-0.44205	-0.00018996	0.0081338	3.4954E-06	-0.43391	-0.00018647	429.7376495972987	15.122	0.47065	15.122	14.86	15.33	0					27	9	4	0	0	0	0.020824	1	3878	3878		120.62	1.0642	1	3243600	+		3643	16043	2142	2153	3708	3708					0.02624925346344753
ATAAPPRPSL	10	Unmodified	_ATAAPPRPSL_					0	0	0			REV__CNNM1|p.A39T|1|0.56|ENSG00000119946|chr10:99329502-99329502|G/A|missense_variant	REV__CNNM1|p.A39T|1|0.56|ENSG00000119946|chr10:99329502-99329502|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.5222473144531	3	327.522303	979.545079	0.55156	0.00018065	-0.63346	-0.00020747	-0.081906	-2.6826E-05	327.52207620691377	21.668	0.26725	21.668	21.492	21.759	0					10	5	2	0	0	0	0.71938	1	7248	7248		24.232	5.9697	1	227260	+		3644	12528	2143	2154	3709	3709					0.054488761630864246
ATAASAPAAP	10	Unmodified	_ATAASAPAAP_					0	0	0		ENST00000380738.8_1_9:15506621-15510932:-|nuORF;ENST00000380733.8_1_9:15506621-15511001:-|nuORF	ENST00000380738.8_1_9:15506621-15510932:-|nuORF	ENST00000380738.8_1_9:15506621-15510932:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.21649169921875	2	414.216517	826.418482	1.0333	0.00042799	-0.40804	-0.00016902	0.62522	0.00025898	414.2160365462055	14.667	0.63801	14.667	14.536	15.174	0					33	15	3	0	0	0	0.357	1	3613	3613		60.972	0	1	487880			3645	9100	2144	2155	3710	3710					-0.0016705006206620965
ATAASLAQLRA	11	Unmodified	_ATAASLAQLRA_					0	0	0			REV__nc|ENSG00000099849|Q02833-3|RASSF7	REV__nc|ENSG00000099849|Q02833-3|RASSF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8108520507812	2	536.809105	1071.60366	3.345	0.0017956	1.0062	0.00054014	4.3512	0.0023357	536.8096578481595	45.82	0.36293	45.82	45.664	46.027	0					33	16	3	0	0	0	0.53842	1	18332	18332		41.427	0.64845	1	434630	+		3646	13501	2145	2156	3711	3711					0.0707193273754001
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2672729492188	2	526.266936	1050.51932	1.34	0.00070519	-0.4922	-0.00025903	0.84779	0.00044616	526.2666315148525	17.594	0.25489	17.594	17.524	17.779	0					12	7	2	0	0	0	0.024591	1	4234	4234		117.71	40.172	1	1006300			3647	1545;6995;2493	2146	2157	3712	3712					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2674560546875	2	526.266936	1050.51932	1.9995	0.0010523	-1.2452	-0.00065531	0.75432	0.00039697	526.2662686146542	17.902	0.40475	17.902	17.816	18.221	0					20	9	4	0	0	0	1.9517E-05	1	5145	5145		173.24	68.812	1	10519000			3648	1545;6995;2493	2146	2157	3713	3713					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2673950195312	2	526.266936	1050.51932	0.4558	0.00023987	0.61914	0.00032583	1.0749	0.00056571	526.2671340064869	17.631	0.24216	17.631	17.528	17.77	0					18	7	4	0	0	0	6.5347E-05	1	4459	4459		153.1	66.22	1	1727600			3649	1545;6995;2493	2146	2157	3714	3714					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.26708984375	2	526.266936	1050.51932	1.7658	0.00092927	-1.4187	-0.0007466	0.34711	0.00018267	526.2660572030352	17.873	0.37044	17.873	17.785	18.156	0					21	7	5	0	0	0	0.045275	1	5406	5406		107.45	39.961	1	6902100			3650	1545;6995;2493	2146	2157	3715	3715					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2674560546875	2	526.266936	1050.51932	1.2024	0.00063281	-0.19909	-0.00010477	1.0034	0.00052804	526.2668656434279	17.698	0.23588	17.698	17.598	17.834	0					12	5	4	0	0	0	0.004134	1	4476	4476		128.35	41.466	1	1321100			3651	1545;6995;2493	2146	2157	3716	3716					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2682495117188	2	526.266936	1050.51932	-1.2238	-0.00064403	3.5131	0.0018488	2.2893	0.0012048	526.2686631847301	17.681	0.15727	17.681	17.624	17.781	0					7	3	3	0	0	0	0.0092585	1	4468	4468		125.68	53.805	1	731740			3652	1545;6995;2493	2146	2157	3717	3717					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2675170898438	2	526.266936	1050.51932	3.4595	0.0018206	-2.048	-0.0010778	1.4115	0.00074283	526.2657533914564	17.858	0.30897	17.858	17.751	18.06	0					16	6	4	0	0	0	0.0012162	1	5240	5240		131.09	46.27	1	6202200			3653	1545;6995;2493	2146	2157	3718	3718					-0.003920628698551809
ATAATRRR	8	Unmodified	_ATAATRRR_					0	0	0			REV__nc|ENSG00000088812|O75882-3|ATRN	REV__nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7688293457031	2	451.767575	901.520596	3.8109	0.0017217	-0.48283	-0.00021813	3.3281	0.0015035	451.76734437249866	21.104	0.10335	21.104	21.04	21.143	0					6	3	2	0	0	0	0.63077	1	6001	6001		44.117	0	1	118130	+		3654	13396	2147	2158	3719	3719					0.0658966080021628
ATAAVIFLH	9	Unmodified	_ATAAVIFLH_					0	0	0		ENST00000521856.1_1_8:55013466-55014395:-|nuORF;ENST00000517297.5_1_8:54967680-55014407:-|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF;nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7737731933594	2	471.774003	941.533452	0.19136	9.0276E-05	-1.0886	-0.00051356	-0.89721	-0.00042328	471.77339591318616	41.14	0.22105	41.14	41.057	41.278	0					17	10	2	0	0	0	0.0086154	1	15640	15640		143.97	60.687	1	159860			3655	3206	2148	2159	3720	3720					0.06034679139747823
ATAAVIFLH	9	Unmodified	_ATAAVIFLH_					0	0	0		ENST00000521856.1_1_8:55013466-55014395:-|nuORF;ENST00000517297.5_1_8:54967680-55014407:-|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF;nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.77484130859375	2	471.774003	941.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.977	1	40.977	40.477	41.477	0								0	0	0	0.14807	1	13657	13657		60.294	10.269	1				3656	3206	2148	2159	3721	3721					0.06034679139747823
ATAAVIFLH	9	Unmodified	_ATAAVIFLH_					0	0	0		ENST00000521856.1_1_8:55013466-55014395:-|nuORF;ENST00000517297.5_1_8:54967680-55014407:-|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF;nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7738037109375	2	471.774003	941.533452	0.58865	0.00027771	-1.2328	-0.0005816	-0.64415	-0.0003039	471.7735408957781	41.114	0.20732	41.114	41.034	41.241	0					13	8	2	0	0	0	0.024477	1	16168	16168		114.59	37.739	1	136490			3657	3206	2148	2159	3722	3722					0.06034679139747823
ATAAVIFLH	9	Unmodified	_ATAAVIFLH_					0	0	0		ENST00000521856.1_1_8:55013466-55014395:-|nuORF;ENST00000517297.5_1_8:54967680-55014407:-|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF;nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7738037109375	2	471.774003	941.533452	-0.5591	-0.00026377	-0.028188	-1.3298E-05	-0.58729	-0.00027707	471.7740152471634	41.082	0.232	41.082	40.943	41.175	0					9	5	2	0	0	0	0.0086154	1	16307	16307		143.97	78.171	1	113640			3658	3206	2148	2159	3723	3723					0.06034679139747823
ATAAVIFLH	9	Unmodified	_ATAAVIFLH_					0	0	0		ENST00000521856.1_1_8:55013466-55014395:-|nuORF;ENST00000517297.5_1_8:54967680-55014407:-|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF;nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	ENST00000521856.1_1_8:55013466-55014395:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7735290527344	2	471.774003	941.533452	0.59108	0.00027886	-1.6697	-0.00078773	-1.0786	-0.00050887	471.773119162489	41.065	0.22536	41.065	40.972	41.198	0					10	5	2	0	0	0	0.043797	1	16320	16320		97.473	38.691	1	207620			3659	3206	2148	2159	3724	3724					0.06034679139747823
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.7271423339844	2	433.226028	864.437503	0.19106	8.2774E-05	-0.84879	-0.00036772	-0.65773	-0.00028494	433.2257136777672	18.624	0.18784	18.624	18.545	18.733	0					15	6	3	0	0	0	0.0047071	1	4650	4650		159.28	26.518	1	1209200			3660	71	2149	2160	3725	3725					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2259216308594	2	433.226028	864.437503	0.71946	0.00031169	-1.3498	-0.00058479	-0.63038	-0.0002731	433.2255964549295	18.928	0.27288	18.928	18.865	19.138	0					23	7	5	0	0	0	0.0023831	1	5612	5612		172.25	39.491	1	8091800			3661	71	2149	2160	3726	3726					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.22613525390625	2	433.226028	864.437503	-0.76666	-0.00033214	-0.30686	-0.00013294	-1.0735	-0.00046508	433.22613690842655	18.628	0.15346	18.628	18.559	18.713	0					11	5	3	0	0	0	0.0059092	1	4894	4894		154.12	17.85	1	717260			3662	71	2149	2160	3727	3727					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.225830078125	2	433.226028	864.437503	-0.46252	-0.00020038	-0.60765	-0.00026325	-1.0702	-0.00046363	433.22592394302495	18.842	0.28919	18.842	18.761	19.05	0					20	6	5	0	0	0	0.011389	1	5840	5840		138.06	17.194	1	3246100			3663	71	2149	2160	3728	3728					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.2259216308594	2	433.226028	864.437503	0.92912	0.00040252	-1.1357	-0.00049202	-0.20659	-8.9501E-05	433.22561064216376	18.875	0.19175	18.875	18.792	18.984	0					9	4	3	0	0	0	0.0023831	1	5858	5858		172.25	39.491	1	2849800			3664	71	2149	2160	3729	3729					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.2257995605469	2	433.226028	864.437503	0.21138	9.1577E-05	-0.82949	-0.00035935	-0.6181	-0.00026778	433.2257429058649	18.67	0.15616	18.67	18.591	18.747	0					10	4	3	0	0	0	0.054723	1	4905	4905		93.598	15.334	1	494930			3665	71	2149	2160	3730	3730					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.2254943847656	2	433.226028	864.437503	-0.49376	-0.00021391	-0.13304	-5.7636E-05	-0.6268	-0.00027155	433.226076260737	18.679	0.23515	18.679	18.623	18.858	0					12	6	3	0	0	0	0.0023831	1	4914	4914		172.25	39.491	1	1346300			3666	71	2149	2160	3731	3731					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.225830078125	2	433.226028	864.437503	-0.49764	-0.00021559	-0.42886	-0.00018579	-0.9265	-0.00040138	433.22601127841824	18.855	0.39296	18.855	18.719	19.112	0					21	8	5	0	0	0	3.5882E-08	1	5709	5709		214.23	42.699	1	5784700			3667	71	2149	2160	3732	3732					-0.0001383676263913003
ATAAVSSMK	9	Unmodified	_ATAAVSSMK_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.22589111328125	2	433.226028	864.437503	0.87278	0.00037811	-1.4311	-0.00062001	-0.55836	-0.0002419	433.22550174003936	18.838	0.34325	18.838	18.752	19.096	0					19	7	4	0	0	0	0.0023831	1	5705	5705		172.25	39.491	1	7277300			3668	71	2149	2160	3733	3733					-0.0001383676263913003
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000165476|Q6NUK4-2|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7686767578125	2	451.768917	901.523281	-0.013691	-6.1851E-06	-0.4868	-0.00021992	-0.50049	-0.00022611	451.76865794249784	21.08	0.15579	21.08	20.99	21.145	0					8	4	3	0	0	0	0.073361	1	5765	5765		101.46	33.966	1	232280			3669	5801	2150	2161	3734	3734					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000165476|Q6NUK4-2|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7691345214844	2	451.768917	901.523281	-1.192	-0.00053853	1.0687	0.00048281	-0.12333	-5.5718E-05	451.7694283853986	21.099	0.098877	21.099	21.032	21.131	0					6	3	2	0	0	0	0.16745	1	6011	6011		83.647	31.348	1	94377			3670	5801	2150	2161	3735	3735					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000165476|Q6NUK4-2|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7689514160156	2	451.768917	901.523281	-0.11096	-5.013E-05	-0.072935	-3.295E-05	-0.1839	-8.3079E-05	451.76885966389204	21.282	0.16528	21.282	21.225	21.39	0					7	3	3	0	0	0	0.002607	1	7044	7044		173.39	69.335	1	661850			3671	5801	2150	2161	3736	3736					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000165476|Q6NUK4-2|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2706604003906	2	451.768917	901.523281	0.40584	0.00018335	-0.66551	-0.00030065	-0.25966	-0.00011731	451.768523683285	21.156	0.15322	21.156	21.078	21.232	0					6	3	2	0	0	0	0.12383	1	6079	6079		91.265	18.386	1	105990			3672	5801	2150	2161	3737	3737					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000165476|Q6NUK4-2|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.76885986328125	2	451.768917	901.523281	-0.097466	-4.4032E-05	-0.77865	-0.00035177	-0.87612	-0.0003958	451.76877825526924	21.16	0.15047	21.16	21.064	21.215	0					5	3	2	0	0	0	0.39647	1	6097	6097		56.632	10.66	1	147190			3673	5801	2150	2161	3738	3738					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000165476|Q6NUK4-2|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7687072753906	2	451.768917	901.523281	-0.40878	-0.00018468	0.020072	9.0678E-06	-0.38871	-0.00017561	451.76891761962975	21.296	0.26366	21.296	21.19	21.454	0					10	5	3	0	0	0	0.002607	1	6921	6921		173.39	69.335	1	1464400			3674	5801	2150	2161	3739	3739					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000165476|Q6NUK4-2|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7688903808594	2	451.768917	901.523281	0.87663	0.00039604	-0.82846	-0.00037427	0.04817	2.1762E-05	451.76852853824573	21.284	0.16509	21.284	21.222	21.387	0					7	3	3	0	0	0	0.011557	1	6918	6918		136.99	43.846	1	850520			3675	5801	2150	2161	3740	3740					0.0685807141450141
ATACCPGILI	10	Unmodified	_ATACCPGILI_					0	0	0			REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.245849609375	2	481.245906	960.477259	0.91163	0.00043872	-0.35238	-0.00016958	0.55925	0.00026914	481.24506776324773	21.441	0.51806	21.441	21.271	21.789	0					26	10	5	0	0	0	0.40673	1	6985	6985		55.504	0.73953	1	1614500	+		3676	14665	2151	2162	3741	3741					-0.004560330835829518
ATADAKTKL	9	Unmodified	_ATADAKTKL_					0	0	0			REV__nc|ENSG00000198963|Q92753|RORB	REV__nc|ENSG00000198963|Q92753|RORB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7659912109375	2	459.766374	917.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.152	1	15.152	14.652	15.652	0								0	0	0	0.31838	1	3852	3852		31.53	0	1		+		3677	21188	2152	2163	3742	3742					0.0561376755188121
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENST00000469665.1_1_3:49160056-49160527:-|nuORF;ENSG00000172037|ENST00000305544|LAMB2	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.250732421875	2	444.250892	886.48723	-1.1587	-0.00051477	0.53452	0.00023746	-0.62421	-0.0002773	444.25109030582166	28.05	0.36927	28.05	27.931	28.3	0					34	13	4	0	0	0	0.013878	1	8982	8982		132.76	45.004	1	1434000			3678	6341	2153	2164	3743	3743					0.03944614237661881
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENST00000469665.1_1_3:49160056-49160527:-|nuORF;ENSG00000172037|ENST00000305544|LAMB2	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2505187988281	2	444.250892	886.48723	-0.21662	-9.6233E-05	-0.4542	-0.00020178	-0.67082	-0.00029801	444.2507203224822	28.3	0.4521	28.3	28.096	28.548	0					20	9	4	0	0	0	0.0025054	1	10338	10338		171.53	69.931	1	1777500			3679	6341	2153	2164	3744	3744					0.03944614237661881
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENST00000469665.1_1_3:49160056-49160527:-|nuORF;ENSG00000172037|ENST00000305544|LAMB2	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2509765625	2	444.250892	886.48723	0.43789	0.00019453	-0.96901	-0.00043048	-0.53111	-0.00023595	444.2504681014277	28.091	0.26715	28.091	28.003	28.27	0					14	6	3	0	0	0	0.0049871	1	9266	9266		158.07	53.328	1	913830			3680	6341	2153	2164	3745	3745					0.03944614237661881
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENST00000469665.1_1_3:49160056-49160527:-|nuORF;ENSG00000172037|ENST00000305544|LAMB2	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2510986328125	2	444.250892	886.48723	-0.4851	-0.00021551	-0.1194	-5.3045E-05	-0.60451	-0.00026855	444.25079885985286	28.105	0.34516	28.105	27.992	28.337	0					22	8	4	0	0	0	0.0080613	2	9259	9247;9259		145.16	45.781	1	1527600			3681	6341	2153	2164	3746;3747	3747					0.03944614237661881
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENST00000469665.1_1_3:49160056-49160527:-|nuORF;ENSG00000172037|ENST00000305544|LAMB2	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2506408691406	2	444.250892	886.48723	-0.47924	-0.0002129	-0.033792	-1.5012E-05	-0.51304	-0.00022792	444.25090160022853	28.22	0.46498	28.22	28.109	28.574	0					27	9	4	0	0	0	0.0025054	1	10206	10206		171.53	72.157	1	7161800			3682	6341	2153	2164	3748	3748					0.03944614237661881
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENST00000469665.1_1_3:49160056-49160527:-|nuORF;ENSG00000172037|ENST00000305544|LAMB2	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENST00000469665.1_1_3:49160056-49160527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2506103515625	2	444.250892	886.48723	0.78205	0.00034743	-1.1544	-0.00051286	-0.37238	-0.00016543	444.25045928143805	28.252	0.61538	28.252	28.092	28.707	0					29	12	5	0	0	0	0.00073892	1	10198	10198		185.55	77.462	1	9898600			3683	6341	2153	2164	3749	3749					0.03944614237661881
ATAEECLKH	9	Unmodified	_ATAEECLKH_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2400207519531	2	501.239667	1000.46478	-0.58149	-0.00029147	2.3397	0.0011727	1.7582	0.00088128	501.2411296713789	19.677	0.46376	19.677	19.447	19.91	0					13	8	2	0	0	0	0.098791	1	6286	6286		79.713	16.406	1	767030			3684	5704	2154	2165	3750	3750					-0.03543353222278256
ATAEKCLHK	9	Unmodified	_ATAEKCLHK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7661437988281	2	500.765852	999.51715	-0.046316	-2.3194E-05	-0.69416	-0.00034761	-0.74048	-0.0003708	500.7656808919353	14.354	0.15414	14.354	14.305	14.459	0					14	8	3	0	0	0	0.41113	1	2943	2943		40.778	0	1	169580			3685	6792	2155	2166	3751	3751					0.01737229911339
ATAEKCLHK	9	Unmodified	_ATAEKCLHK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7661437988281	2	500.765852	999.51715	-0.13594	-6.8074E-05	0.34404	0.00017228	0.2081	0.00010421	500.766159852558	14.691	0.21522	14.691	14.605	14.82	0					12	5	3	0	0	0	0.15163	1	3623	3623		67.494	6.5217	1	2090000			3686	6792	2155	2166	3752	3752					0.01737229911339
ATAEKCLHK	9	Unmodified	_ATAEKCLHK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.765625	2	500.765852	999.51715	-0.98621	-0.00049386	0.63418	0.00031758	-0.35203	-0.00017628	500.76633743130594	14.356	0.2038	14.356	14.29	14.494	0					17	9	4	0	0	0	0.048471	1	3094	3094		95.815	21.56	1	314060			3687	6792	2155	2166	3753	3753					0.01737229911339
ATAEKCLHK	9	Unmodified	_ATAEKCLHK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.76568603515625	2	500.765852	999.51715	0.9209	0.00046115	-1.5242	-0.00076325	-0.60327	-0.0003021	500.76526835028517	14.638	0.45523	14.638	14.539	14.994	0					20	9	4	0	0	0	0.010494	1	3850	3850		139.97	52.274	1	5947100			3688	6792	2155	2166	3754	3754					0.01737229911339
ATAEKCLHK	9	Unmodified	_ATAEKCLHK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7662048339844	2	500.765852	999.51715	0.1523	7.6268E-05	0.44653	0.00022361	0.59884	0.00029988	500.76620445400977	14.415	0.10495	14.415	14.37	14.475	0					9	4	3	0	0	0	0.19605	1	3060	3060		62.107	1.1355	1	158060			3689	6792	2155	2166	3755	3755					0.01737229911339
ATAEKCLHK	9	Unmodified	_ATAEKCLHK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7655029296875	2	500.765852	999.51715	1.1053	0.0005535	-1.6443	-0.00082342	-0.53902	-0.00026992	500.76492321104837	14.6	0.26944	14.6	14.541	14.811	0					13	5	3	0	0	0	0.0080613	1	3678	3678		145.16	54.379	1	3055400			3690	6792	2155	2166	3756	3756					0.01737229911339
ATAEKCLHK	9	Carbamidomethyl (C)	_ATAEKC(Carbamidomethyl (C))LHK_	ATAEKC(1)LHK		ATAEKC(73)LHK		0	1	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2763671875	2	529.276583	1056.53861	1.7396	0.00092074	-1.6797	-0.00088903	0.059911	3.171E-05	529.2756506141156	13.784	0.10544	13.784	13.687	13.793	0					4	2	2	0	0	0	0.12834	1	3428	3428		72.879	24.964	1	484980			3691	6792	2155	2167	3757	3757	290				0.012606149400653521
ATAEKCLHK	9	Carbamidomethyl (C)	_ATAEKC(Carbamidomethyl (C))LHK_	ATAEKC(1)LHK		ATAEKC(60)LHK		0	1	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2777709960938	2	529.276583	1056.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.548	1	13.548	13.048	14.048	0								0	0	0	0.14881	1	2740	2740		60.118	8.9256	1				3692	6792	2155	2167	3758	3758	290				0.012606149400653521
ATAEKCLHK	9	Carbamidomethyl (C)	_ATAEKC(Carbamidomethyl (C))LHK_	ATAEKC(1)LHK		ATAEKC(43)LHK		0	1	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.277099609375	2	529.276583	1056.53861	1.6296	0.00086249	-0.90804	-0.00048061	0.72152	0.00038188	529.2762350996983	13.707	0.11138	13.707	13.655	13.766	0					4	2	2	0	0	0	0.38666	1	3257	3257		42.864	7.246	1	432840			3693	6792	2155	2167	3759	3759	290				0.012606149400653521
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2665710449219	2	496.265684	990.516816	0.090448	4.4886E-05	-0.91626	-0.00045471	-0.82581	-0.00040982	496.2653970900688	30.968	0.40933	30.968	30.827	31.236	0					44	16	4	0	0	0	0.095583	1	9885	9885		80.455	19.483	1	2002900			3694	2385	2156	2168	3760	3760					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.26519775390625	2	496.265684	990.516816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.957	1	30.957	30.457	31.457	0								0	0	0	0.0026431	1	9911	9911		117.81	19.182	1				3695	2385	2156	2168	3761	3761					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2657775878906	2	496.265684	990.516816	0.72554	0.00036006	-0.77296	-0.00038359	-0.047418	-2.3532E-05	496.26545611249844	31.255	0.50342	31.255	31.08	31.584	0					33	12	3	0	0	0	0.003936	1	11330	11330		163.15	46.247	1	15625000			3696	2385	2156	2168	3762	3762					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2664794921875	2	496.265684	990.516816	-1.192	-0.00059156	0.29898	0.00014837	-0.89304	-0.00044318	496.26595757623124	31.014	0.41676	31.014	30.895	31.311	0					44	15	4	0	0	0	0.017421	1	10207	10207		126.24	44.002	1	2672600			3697	2385	2156	2168	3763	3763					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2654724121094	2	496.265684	990.516816	0.73894	0.00036671	-0.57506	-0.00028538	0.16388	8.1329E-05	496.2654451553565	31.221	0.54464	31.221	31.077	31.622	0					24	12	2	0	0	0	5.5435E-08	1	11741	11741		209.19	93.701	1	16717000			3698	2385	2156	2168	3764	3764					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2658996582031	2	496.265684	990.516816	-0.012317	-6.1126E-06	-0.21331	-0.00010586	-0.22563	-0.00011197	496.2655124437638	31.008	0.31466	31.008	30.842	31.157	0					14	8	3	0	0	0	0.0076184	1	10617	10617		146.79	45.185	1	312410			3699	2385	2156	2168	3765	3765					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2654113769531	2	496.265684	990.516816	0.13028	6.4651E-05	-0.67831	-0.00033662	-0.54804	-0.00027197	496.2654495264995	30.997	0.49948	30.997	30.903	31.403	0					31	13	4	0	0	0	1.3754E-05	1	10610	10610		204.62	85.882	1	2814500			3700	2385	2156	2168	3766	3766					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.265625	2	496.265684	990.516816	-2.3681	-0.0011752	1.7101	0.00084865	-0.65808	-0.00032658	496.26665222930643	30.983	0.30753	30.983	30.891	31.199	0					21	8	3	0	0	0	0.0097668	1	10603	10603		141.52	50.744	1	1542000			3701	2385	2156	2168	3767	3767					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.265380859375	2	496.265684	990.516816	-0.6826	-0.00033875	0.11091	5.5043E-05	-0.57168	-0.00028371	496.2657943926432	31.182	0.4614	31.182	31.076	31.537	0					21	9	3	0	0	0	0.0055674	1	11619	11619		155.58	47.497	1	3520100			3702	2385	2156	2168	3768	3768					0.021178101914983927
ATAELIMSR	9	Unmodified	_ATAELIMSR_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2655029296875	2	496.265684	990.516816	0.96111	0.00047697	-0.713	-0.00035384	0.24811	0.00012313	496.2653388682366	31.216	0.51106	31.216	31.059	31.571	0					20	10	2	0	0	0	5.4275E-05	1	11614	11614		195.05	84.926	1	15125000			3703	2385	2156	2168	3769	3769					0.021178101914983927
ATAEQACKEK	10	Unmodified	_ATAEQACKEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7637329101562	2	539.763506	1077.51246	0.93088	0.00050246	-0.52904	-0.00028556	0.40184	0.0002169	539.7632727231323	13.975	0.081081	13.975	13.938	14.019	0					10	4	3	0	0	0	0.01518	1	2810	2810		128.6	50.338	1	219580			3704	3441	2157	2169	3770	3770					-0.02319699022086752
ATAEQACKEK	10	Unmodified	_ATAEQACKEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7643432617188	2	539.763506	1077.51246	0.26157	0.00014118	0.43301	0.00023372	0.69458	0.00037491	539.7638363178254	14.297	0.32407	14.297	14.212	14.536	0					15	8	4	0	0	0	0.00048463	1	3441	3441		187.5	63.424	1	2485000			3705	3441	2157	2169	3771	3771					-0.02319699022086752
ATAEQACKEK	10	Unmodified	_ATAEQACKEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.76318359375	2	539.763506	1077.51246	-0.087129	-4.7029E-05	0.28613	0.00015444	0.199	0.00010741	539.763679454631	13.997	0.10316	13.997	13.941	14.044	0					11	5	3	0	0	0	0.023179	1	2954	2954		122.94	35.243	1	269250			3706	3441	2157	2169	3772	3772					-0.02319699022086752
ATAEQACKEK	10	Unmodified	_ATAEQACKEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7639770507812	2	539.763506	1077.51246	0.30459	0.00016441	0.46012	0.00024836	0.76472	0.00041277	539.763889098965	14.209	0.34385	14.209	14.15	14.494	0					11	7	2	0	0	0	0.0071914	1	3645	3645		157.34	47.225	1	1792700			3707	3441	2157	2169	3773	3773					-0.02319699022086752
ATAEQACKEKL	11	Unmodified	_ATAEQACKEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.8724670410156	3	397.872784	1190.59652	0.085786	3.4132E-05	-0.93883	-0.00037354	-0.85305	-0.0003394	397.8723865217592	21.734	0.2174	21.734	21.575	21.793	0					8	4	3	0	0	0	0.45905	1	7240	7240		47.228	2.2055	1	204870			3708	3441	2158	2170	3774	3774					0.00884832074825681
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2930603027344	2	508.292756	1014.57096	0.91457	0.00046487	-0.58712	-0.00029843	0.32745	0.00016644	508.2925806414288	31.989	0.13189	31.989	31.921	32.053	0					9	5	2	0	0	0	0.11048	1	10312	10312		93.598	35.368	1	125240			3709	3528	2159	2171	3775	3775					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2926025390625	2	508.292756	1014.57096	0.89787	0.00045638	-1.063	-0.00054031	-0.16513	-8.3936E-05	508.2921611826135	32.266	0.29391	32.266	32.181	32.475	0					10	7	2	0	0	0	0.01518	1	11838	11838		128.6	65.068	1	596250			3710	3528	2159	2171	3776	3776					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2926940917969	2	508.292756	1014.57096	-0.578	-0.00029379	-0.5388	-0.00027387	-1.1168	-0.00056766	508.2927335209038	32.019	0.089737	32.019	31.987	32.077	0					6	3	2	0	0	0	0.16745	1	10667	10667		83.647	39.27	1	88163			3711	3528	2159	2171	3777	3777					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.29376220703125	2	508.292756	1014.57096	0.18204	9.2531E-05	0.89051	0.00045264	1.0725	0.00054517	508.29324726952785	32.241	0.2435	32.241	32.142	32.385	0					8	5	2	0	0	0	0.20981	1	12229	12229		78.264	23.487	1	104490			3712	3528	2159	2171	3778	3778					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2928161621094	2	508.292756	1014.57096	1.1395	0.00057921	0.61014	0.00031013	1.7497	0.00088934	508.29311815853504	32.237	0.34011	32.237	32.032	32.372	0					13	7	3	0	0	0	0.21577	1	12246	12246		77.533	15.426	1	442290			3713	3528	2159	2171	3779	3779					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2931823730469	2	508.292756	1014.57096	0.47537	0.00024163	0.92714	0.00047126	1.4025	0.00071289	508.2932361873406	32.056	0.13411	32.056	31.967	32.101	0					5	3	2	0	0	0	0.27065	1	11099	11099		70.816	27.952	1	62131			3714	3528	2159	2171	3780	3780					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.292724609375	2	508.292756	1014.57096	0.097912	4.9768E-05	-0.22601	-0.00011488	-0.1281	-6.5113E-05	508.292655961105	32.039	0.16151	32.039	31.958	32.119	0					7	4	2	0	0	0	0.22691	1	11111	11111		76.17	17.388	1	124450			3715	3528	2159	2171	3781	3781					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.29290771484375	2	508.292756	1014.57096	-0.1002	-5.0931E-05	-0.53583	-0.00027236	-0.63603	-0.00032329	508.2929227381537	32.203	0.36931	32.203	31.969	32.338	0					14	7	3	0	0	0	0.13663	1	12140	12140		89.029	30.247	1	522330			3716	3528	2159	2171	3782	3782					0.06425725614712974
ATAEVLNIGK	10	Unmodified	_ATAEVLNIGK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000510584.1_1_4:57302478-57308067:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2929382324219	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.237	1	32.237	31.737	32.737	0								0	0	0	0.0031589	1	12134	12134		145.46	65.006	1				3717	3528	2159	2171	3783	3783					0.06425725614712974
ATAEVTFLK	9	Unmodified	_ATAEVTFLK_					0	0	0			REV__NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	REV__NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2762451171875	2	490.276575	978.538597	-0.069383	-3.4017E-05	-0.55886	-0.00027399	-0.62824	-0.00030801	490.27645506210547	32.98	0.23979	32.98	32.885	33.124	0					8	5	2	0	0	0	0.39215	1	12595	12595		42.396	0	1	200220	+		3718	15778	2160	2172	3784	3784					0.048469382116991255
ATAFGLGK	8	Unmodified	_ATAFGLGK_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.71868896484375	2	382.718696	763.422839	0.6103	0.00023357	-0.6226	-0.00023828	-0.012296	-4.7061E-06	382.71843578167085	22.931	0.26239	22.931	22.822	23.084	0					13	5	3	0	0	0	0.46905	1	7709	7709		63.306	3.0123	1	1897800			3719	6904	2161	2173	3785	3785					0.031664591515209395
ATAGALMARQK	11	Unmodified	_ATAGALMARQK_					0	0	0			REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.2098388671875	3	373.209731	1116.60736	0.35172	0.00013127	-0.31702	-0.00011832	0.034702	1.2951E-05	373.2098288272059	22.377	2.8704	22.377	22.148	25.019	0					134	67	4	0	0	0	0.6208	1	7411	7411		35.178	1.2566	1	14117000	+		3720	14043	2162	2174	3786	3786					0.053722792397593366
ATAGALMARQK	11	Unmodified	_ATAGALMARQK_					0	0	0			REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2102355957031	3	373.209731	1116.60736	0.84353	0.00031481	-0.81533	-0.00030429	0.028199	1.0524E-05	373.2096237524872	37.091	1.1662	37.091	36.771	37.937	0					87	36	3	0	0	0	0.73562	1	14594	14594		24.232	1.6522	1	150180	+		3721	14043	2162	2174	3787	3787					0.053722792397593366
ATAGALMARQK	11	Unmodified	_ATAGALMARQK_					0	0	0			REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2106018066406	3	373.209731	1116.60736	0.84676	0.00031602	0.055992	2.0897E-05	0.90276	0.00033692	373.20988010858883	46.653	0.33191	46.653	46.476	46.808	0					30	19	2	0	0	0	0.73562	1	17915	17915		24.232	1.6702	1	58185	+		3722	14043	2162	2174	3788	3788					0.053722792397593366
ATAGALMARQK	11	Unmodified	_ATAGALMARQK_					0	0	0			REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	REV__RAD50|p.K722Gfs*5|1|0.35|ENSG00000113522|chr5:132595760-132595761|AA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2101135253906	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.904	1	47.904	47.404	48.404	0								0	0	0	0.44222	1	19075	19075		27.644	3.1247	1		+		3723	14043	2162	2174	3789	3789					0.053722792397593366
ATAGFTIGR	9	Unmodified	_ATAGFTIGR_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2454833984375	2	447.245609	892.476666	-0.29932	-0.00013387	-0.23489	-0.00010505	-0.53421	-0.00023892	447.24554716488365	30.07	0.318	30.07	29.974	30.292	0					25	11	3	0	0	0	0.0071053	1	9527	9527		148.99	69.274	1	997760			3724	7027	2163	2175	3790	3790					0.026126315832470937
ATAGFTIGR	9	Unmodified	_ATAGFTIGR_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.24560546875	2	447.245609	892.476666	0.60909	0.00027241	-1.7961	-0.0008033	-1.187	-0.00053088	447.24478892560614	30.357	0.13264	30.357	30.284	30.416	0					6	3	2	0	0	0	0.21263	1	10957	10957		60.118	14.146	1	143680			3725	7027	2163	2175	3791	3791					0.026126315832470937
ATAGFTIGR	9	Unmodified	_ATAGFTIGR_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2455749511719	2	447.245609	892.476666	-0.42718	-0.00019105	-0.19382	-8.6684E-05	-0.621	-0.00027774	447.2455402063661	30.362	0.64335	30.362	30.234	30.877	0					40	15	5	0	0	0	0.012231	1	10906	10906		136.27	62.013	1	6716100			3726	7027	2163	2175	3792	3792					0.026126315832470937
ATAGFTIGR	9	Unmodified	_ATAGFTIGR_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2451171875	2	447.245609	892.476666	-0.38843	-0.00017372	-0.18967	-8.483E-05	-0.5781	-0.00025855	447.2454972418147	30.135	0.38539	30.135	30.018	30.403	0					23	9	4	0	0	0	0.014688	1	10203	10203		131.03	56.776	1	969550			3727	7027	2163	2175	3793	3793					0.026126315832470937
ATAGIAIPALG	11	Unmodified	_ATAGIAIPALG_					0	0	0		ENST00000478399.5_1_3:119298211-119298877:+|nuORF	ENST00000478399.5_1_3:119298211-119298877:+|nuORF	ENST00000478399.5_1_3:119298211-119298877:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7843933105469	2	477.784567	953.554582	-0.30478	-0.00014562	-0.15735	-7.5177E-05	-0.46212	-0.00022079	477.784437555205	33.163	0.68294	33.163	32.814	33.497	0					45	18	3	0	0	0	0.63135	1	12146	12146		34.173	8.5985	1	983950			3728	9935	2164	2176	3794	3794					0.0759464444859077
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.28497314453125	2	486.285266	970.555979	-0.2928	-0.00014239	0.19115	9.2956E-05	-0.10165	-4.9431E-05	486.2855655625535	28.598	0.77138	28.598	28.435	29.207	0					54	19	5	0	0	0	0.0045666	1	10093	10093		167.23	62.482	1	29624000			3729	4438;562	2165	2177	3795	3795					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2849426269531	2	486.285266	970.555979	-1.2409	-0.00060344	0.039383	1.9152E-05	-1.2015	-0.00058429	486.28544515580427	28.298	0.11894	28.298	28.234	28.353	0					14	4	4	0	0	0	0.026103	1	9100	9100		120.87	30.499	1	3343500			3730	4438;562	2165	2177	3796	3796					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2849426269531	2	486.285266	970.555979	-0.86485	-0.00042056	0.1648	8.0141E-05	-0.70004	-0.00034042	486.28533265964074	28.316	0.29827	28.316	28.222	28.52	0					21	10	3	0	0	0	0.14426	1	9098	9098		87.696	34.76	1	862230			3731	4438;562	2165	2177	3797	3797					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2852783203125	2	486.285266	970.555979	0.64307	0.00031272	-0.99064	-0.00048173	-0.34756	-0.00016902	486.284988251125	28.573	0.11575	28.573	28.465	28.581	0					10	2	5	0	0	0	0.0068485	1	10469	10469		159.28	43.782	1	15341000			3732	4438;562	2165	2177	3798	3798					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.28521728515625	2	486.285266	970.555979	-0.68652	-0.00033384	0.14694	7.1456E-05	-0.53957	-0.00026239	486.28532164797764	28.606	0.4135	28.606	28.449	28.863	0					21	8	3	0	0	0	0.0031985	1	10461	10461		171.53	81.162	1	4063800			3733	4438;562	2165	2177	3799	3799					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2850341796875	2	486.285266	970.555979	2.5204	0.0012256	-1.5017	-0.00073025	1.0187	0.00049538	486.2848636365848	28.534	0.81427	28.534	28.375	29.19	0					47	16	5	0	0	0	0.0029705	1	10334	10334		172.25	68.192	1	35848000			3734	4438;562	2165	2177	3800	3800					0.06952278537380607
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.33349609375	2	550.332747	1098.65094	1.2826	0.00070587	-0.4733	-0.00026048	0.80932	0.00044539	550.3325711190399	22.431	0.31167	22.431	22.346	22.657	0					23	9	4	0	0	0	0.0092585	1	6329	6329		120.87	14.185	1	1846700			3735	4438;562	2166	2178	3801	3801					0.10556212008555121
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.2241516113281	3	367.224257	1098.65094	0.081484	2.9923E-05	-0.36293	-0.00013328	-0.28145	-0.00010335	367.22415026489836	22.431	0.21488	22.431	22.346	22.561	0					17	6	4	0	0	0	0.3077	1	6344	6344		61.765	18.114	1	975290			3736	4438;562	2166	2178	3802	3802					0.10556212008555121
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3333129882812	2	550.332747	1098.65094	0.54955	0.00030244	-0.21478	-0.0001182	0.33477	0.00018424	550.3326149243484	22.763	0.45854	22.763	22.676	23.134	0					31	11	5	0	0	0	7.0259E-05	1	7431	7431		134.77	28.083	1	12933000			3737	4438;562	2166	2178	3803	3803					0.10556212008555121
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.3329467773438	2	550.332747	1098.65094	-0.33649	-0.00018518	0.88004	0.00048432	0.54355	0.00029913	550.3332047512572	22.467	0.25383	22.467	22.376	22.63	0					20	7	4	0	0	0	0.029346	1	6609	6609		109.48	26.728	1	1718500			3738	4438;562	2166	2178	3804	3804					0.10556212008555121
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.2242126464844	3	367.224257	1098.65094	1.1437	0.00042	-1.5588	-0.00057242	-0.41507	-0.00015242	367.2238102615007	22.652	1.3546	22.652	21.858	23.212	0					57	27	4	0	0	0	0.17294	1	7707	7707		77.533	36.107	1	7351700			3739	4438;562	2166	2178	3805	3805					0.10556212008555121
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.332763671875	2	550.332747	1098.65094	0.18803	0.00010348	0.08179	4.5011E-05	0.26982	0.00014849	550.3328006553322	22.685	0.46035	22.685	22.584	23.044	0					23	9	5	0	0	0	1.3931E-05	1	7699	7699		160.82	37.614	1	9262700			3740	4438;562	2166	2178	3806	3806					0.10556212008555121
ATAGLLQQ	8	Unmodified	_ATAGLLQQ_					0	0	0			REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.226806640625	2	401.226885	800.439217	0.94139	0.00037771	-1.2724	-0.00051051	-0.33098	-0.0001328	401.22641267153455	16.2	0.47814	16.2	15.897	16.375	0					21	11	2	0	0	0	0.28427	1	4312	4312		87.754	18.967	1	680640	+		3741	12258	2167	2179	3807	3807					0.03101540317618401
ATAGLLQQ	8	Unmodified	_ATAGLLQQ_					0	0	0			REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.2267150878906	2	401.226885	800.439217	0.059709	2.3957E-05	-0.1851	-7.4268E-05	-0.12539	-5.0311E-05	401.2269957341224	16.137	0.41319	16.137	15.834	16.247	0					14	8	2	0	0	0	0.5676	1	4517	4517		53.351	5.6941	1	127990	+		3742	12258	2167	2179	3808	3808					0.03101540317618401
ATAGLLQQ	8	Unmodified	_ATAGLLQQ_					0	0	0			REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2269287109375	2	401.226885	800.439217	-0.60397	-0.00024233	0.4043	0.00016221	-0.19968	-8.0116E-05	401.22717598631556	16.106	0.36792	16.106	15.849	16.217	0					15	7	3	0	0	0	0.60719	1	4356	4356		47.916	7.343	1	421730	+		3743	12258	2167	2179	3809	3809					0.03101540317618401
ATAGLLQQ	8	Unmodified	_ATAGLLQQ_					0	0	0			REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2266845703125	2	401.226885	800.439217	0.4879	0.00019576	-0.81066	-0.00032526	-0.32275	-0.0001295	401.22663062677424	16.084	0.41912	16.084	15.832	16.251	0					21	8	3	0	0	0	0.37144	1	4395	4395		74.255	5.4682	1	494950	+		3744	12258	2167	2179	3810	3810					0.03101540317618401
ATAGNVLMH	9	Unmodified	_ATAGNVLMH_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.23114013671875	2	457.231645	912.448736	-1.027	-0.00046956	-0.20716	-9.4722E-05	-1.2341	-0.00056428	457.23178218367445	26.526	0.17175	26.526	26.438	26.609	0					12	6	3	0	0	0	0.18605	1	8358	8358		63.306	15.391	1	93316			3745	5226;11602	2168	2180	3811	3811					-0.010990146685116997
ATAGNVLMH	9	Unmodified	_ATAGNVLMH_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2309875488281	2	457.231645	912.448736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.612	1	26.612	26.112	27.112	0								0	0	0	0.27025	1	8594	8594		40.778	0.20554	1				3746	5226;11602	2168	2180	3812	3812					-0.010990146685116997
ATAGNVLMH	9	Unmodified	_ATAGNVLMH_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2314147949219	2	457.231645	912.448736	2.4892	0.0011382	-3.7526	-0.0017158	-1.2634	-0.00057767	457.2299553395007	26.73	0.26528	26.73	26.62	26.885	0					13	5	3	0	0	0	0.023949	1	9493	9493		115.46	41.484	1	407960			3747	5226;11602	2168	2180	3813	3813					-0.010990146685116997
ATAGPKRISL	10	Unmodified	_ATAGPKRISL_					0	0	0		ENST00000369331.8_1_10:115439067-115480867:+|nuORF	ENST00000369331.8_1_10:115439067-115480867:+|nuORF	ENST00000369331.8_1_10:115439067-115480867:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.54156494140625	3	338.541586	1012.60293	0.51349	0.00017384	-0.53269	-0.00018034	-0.019204	-6.5013E-06	338.54143424525375	20.926	0.62429	20.926	20.551	21.175	0					44	14	5	0	0	0	0.60281	1	6518	6518		33.922	0	1	5917800			3748	8939	2169	2181	3814	3814					0.0971313808852301
ATAGPKRISL	10	Unmodified	_ATAGPKRISL_					0	0	0		ENST00000369331.8_1_10:115439067-115480867:+|nuORF	ENST00000369331.8_1_10:115439067-115480867:+|nuORF	ENST00000369331.8_1_10:115439067-115480867:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.5418701171875	3	338.541586	1012.60293	-0.7027	-0.00023789	1.3866	0.00046943	0.68393	0.00023154	338.54222003257485	20.576	0.30519	20.576	20.386	20.692	0					15	9	2	0	0	0	0.61238	1	5777	5777		32.751	8.2313	1	179530			3749	8939	2169	2181	3815	3815					0.0971313808852301
ATAHPDDV	8	Unmodified	_ATAHPDDV_					0	0	0			REV__ENST00000301764.11_1_11:61066939-61067056:-|nuORF	REV__ENST00000301764.11_1_11:61066939-61067056:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.1908264160156	2	413.1905	824.366446	-0.07344	-3.0345E-05	0.57065	0.00023579	0.49721	0.00020544	413.1906727122869	17.031	0.20879	17.031	16.93	17.139	0					10	6	2	0	0	0	0.75243	1	4159	4159		26.796	1.3459	1	105310	+		3750	18207	2170	2182	3816	3816					-0.05276213475815439
ATAIDIATSK	10	Unmodified	_ATAIDIATSK_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7768859863281	2	495.776939	989.539325	0.73338	0.00036359	-1.7086	-0.00084711	-0.97527	-0.00048352	495.77621829997616	28.449	0.28604	28.449	28.368	28.655	0					15	7	3	0	0	0	0.41055	1	10068	10068		55.084	14.511	1	281960			3751	5836	2171	2183	3817	3817					0.0441373286076896
ATAIDIATSK	10	Unmodified	_ATAIDIATSK_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7765197753906	2	495.776939	989.539325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.448	1	28.448	27.948	28.948	0								0	0	0	0.34574	1	10308	10308		43.651	5.8393	1				3752	5836	2171	2183	3818	3818					0.0441373286076896
ATAIFLFTK	9	Unmodified	_ATAIFLFTK_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.29742431640625	2	506.29731	1010.58007	1.0841	0.00054886	-0.39336	-0.00019916	0.69071	0.0003497	506.2970349741375	46.883	0.20541	46.883	46.769	46.974	0					18	11	2	0	0	0	0.16806	1	17951	17951		65.465	26.659	1	147100			3753	3973	2172	2184	3819	3819					0.07520118971046941
ATAIFLFTK	9	Unmodified	_ATAIFLFTK_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2969055175781	2	506.29731	1010.58007	1.2613	0.00063858	-0.45568	-0.00023071	0.8056	0.00040787	506.2970467804336	46.835	0.27176	46.835	46.734	47.005	0					27	13	3	0	0	0	0.12834	1	18708	18708		72.879	14.649	1	177380			3754	3973	2172	2184	3820	3820					0.07520118971046941
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7757568359375	2	508.775885	1015.53722	-0.10312	-5.2466E-05	-0.40437	-0.00020573	-0.50749	-0.0002582	508.77590138126067	29.234	0.43413	29.234	29.116	29.55	0					45	15	5	0	0	0	0.13663	1	9192	9192		89.029	28.057	1	2663700			3755	2587	2173	2185	3821	3821					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7757873535156	2	508.775885	1015.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.49	1	29.49	28.99	29.99	0								0	0	0	0.012705	1	10537	10537		109.44	43.973	1				3756	2587	2173	2185	3822	3822					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7760009765625	2	508.775885	1015.53722	-0.53953	-0.0002745	0.13252	6.7422E-05	-0.40701	-0.00020708	508.7760667752666	29.284	0.43557	29.284	29.136	29.571	0					50	17	6	0	0	0	0.026898	1	9497	9497		120.31	54.841	1	3760100			3757	2587	2173	2185	3823	3823					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.77655029296875	2	508.775885	1015.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.289	1	29.289	28.789	29.789	0								0	0	0	0.37702	1	9522	9522		37.508	1.0614	1				3758	2587	2173	2185	3824	3824					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.77581787109375	2	508.775885	1015.53722	1.1539	0.00058708	-1.2597	-0.00064089	-0.10578	-5.3817E-05	508.77567294253043	29.514	1.3176	29.514	29.146	30.464	0					59	28	3	0	0	0	0.012356	1	10922	10922		133.99	51.688	1	23176000			3759	2587	2173	2185	3825	3825					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.77581787109375	2	508.775885	1015.53722	-0.39866	-0.00020283	-1.8124	-0.0009221	-2.211	-0.0011249	508.7759835637291	29.498	0.20318	29.498	29.396	29.599	0					11	4	3	0	0	0	0.25899	1	10938	10938		72.243	24.586	1	690100			3760	2587	2173	2185	3826	3826					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.77587890625	2	508.775885	1015.53722	0.15373	7.8215E-05	-0.21284	-0.00010829	-0.059107	-3.0072E-05	508.7758074336459	29.301	0.21688	29.301	29.209	29.426	0					15	5	4	0	0	0	0.049666	1	9830	9830		109.44	39.811	1	797550			3761	2587	2173	2185	3827	3827					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7757873535156	2	508.775885	1015.53722	-1.8733	-0.00095311	1.2816	0.00065203	-0.59177	-0.00030108	508.77677455266974	29.292	0.60693	29.292	29.196	29.803	0					34	15	4	0	0	0	0.080628	1	9822	9822		99.013	38.041	1	4365800			3762	2587	2173	2185	3828	3828					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.77587890625	2	508.775885	1015.53722	1.3261	0.00067469	-1.955	-0.00099464	-0.62888	-0.00031996	508.77519135503576	29.448	0.90935	29.448	29.19	30.099	0					28	18	2	0	0	0	0.034592	1	10798	10798		114.86	47.365	1	8726500			3763	2587	2173	2185	3829	3829					0.03006980851307617
ATAIGMPVEK	10	Unmodified	_ATAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7764892578125	2	508.775885	1015.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.45	1	29.45	28.95	29.95	0								0	0	0	0.019483	1	10790	10790		117.53	35.221	1				3764	2587	2173	2185	3830	3830					0.03006980851307617
ATAIGMPVEK	10	Oxidation (M)	_ATAIGM(Oxidation (M))PVEK_		ATAIGM(1)PVEK		ATAIGM(84)PVEK	0	0	1		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7736206054688	2	516.773342	1031.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.877	1	21.877	21.377	22.377	0								0	0	0	0.081515	1	6353	6353		83.647	22.675	1				3765	2587	2173	2186	3831	3831		114			0.017626769886874172
ATAIGMPVEK	10	Oxidation (M)	_ATAIGM(Oxidation (M))PVEK_		ATAIGM(1)PVEK		ATAIGM(76)PVEK	0	0	1		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7736206054688	2	516.773342	1031.53213	-1.483	-0.00076639	1.1648	0.00060196	-0.31818	-0.00016443	516.7744441215998	21.896	0.31926	21.896	21.792	22.111	0					13	7	3	0	0	0	0.22691	1	6461	6461		76.17	21.393	1	176020			3766	2587	2173	2186	3832	3832		114			0.017626769886874172
ATAINPLHQ	9	Unmodified	_ATAINPLHQ_					0	0	0		TFAP2C|p.A85T|1|0.07|ENSG00000087510|chr20:56631409-56631409|G/A|missense_variant	TFAP2C|p.A85T|1|0.07|ENSG00000087510|chr20:56631409-56631409|G/A|missense_variant	TFAP2C|p.A85T|1|0.07|ENSG00000087510|chr20:56631409-56631409|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7644348144531	2	482.764166	963.513779	0.063007	3.0418E-05	-0.78055	-0.00037682	-0.71755	-0.00034641	482.76410668201345	14.115	0.10713	14.115	14.032	14.139	0					10	5	3	0	0	0	0.47038	1	2852	2852		35.618	1.6967	1	120020			3767	22525	2174	2187	3833	3833					0.030563031289943865
ATAISLMRK	9	Unmodified	_ATAISLMRK_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.79180908203125	2	495.791869	989.569186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.555	1	25.555	25.055	26.055	0								0	0	0	0.072369	1	9085	9085		79.713	8.4169	1				3768	22500	2175	2188	3834	3834					0.0739839332510428
ATAITVGTK	9	Unmodified	_ATAITVGTK_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2554626464844	2	431.255643	860.496732	-0.46628	-0.00020108	0.089038	3.8398E-05	-0.37724	-0.00016269	431.25569849039823	19.153	0.21312	19.153	19.047	19.26	0					15	4	5	0	0	0	0.048471	1	5854	5854		95.815	5.4453	1	3958100			3769	22858	2176	2189	3835	3835					0.06090382523188964
ATAKDTYNK	9	Unmodified	_ATAKDTYNK_					0	0	0		ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000198513|Q8WXF7-2|ATL1;ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant	ENSG00000198513|ENST00000358385|ATL1	ENSG00000198513|ENST00000358385|ATL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2587585449219	2	506.258914	1010.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.098	1	13.098	12.598	13.598	0								0	0	0	0.16453	1	3108	3108		56.434	10.462	1				3770	7570	2177	2190	3836	3836					-0.0015572431609598425
ATAKRGRSRS	10	Unmodified	_ATAKRGRSRS_					0	0	0		nc|ENSG00000167978|Q9UQ35-2|SRRM2;SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.318603515625	2	545.31542	1088.61629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.554	1	50.554	50.054	51.054	0								0	0	0	0.39665	1	15190	15190		31.53	2.3803	1				3771	6042	2178	2191	3837	3837					0.07552388920453268
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2821655273438	2	529.281857	1056.54916	1.1733	0.000621	-0.25325	-0.00013404	0.92003	0.00048696	529.2816553529942	35.482	0.40023	35.482	35.369	35.769	0					73	20	5	0	0	0	0.023928	1	11607	11607		115.49	51.287	1	3406700			3772	3994	2179	2192	3838	3838					0.023149208661379816
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.282470703125	2	529.281857	1056.54916	2.2945	0.0012144	-1.6989	-0.0008992	0.59556	0.00031522	529.2807708099476	35.755	0.9745	35.755	35.495	36.469	0					77	26	5	0	0	0	0.013878	2	13404	13404;13563		132.76	63.971	1	22731000			3773	3994	2179	2192	3839;3840	3839					0.023149208661379816
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.283935546875	2	529.281857	1056.54916	1.8228	0.00096477	0.35569	0.00018826	2.1785	0.001153	529.2820229146693	35.519	0.13799	35.519	35.478	35.616	0					7	5	2	0	0	0	0.21263	1	12669	12669		60.118	7.0293	1	103940			3774	3994	2179	2192	3841	3841					0.023149208661379816
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2822875976562	2	529.281857	1056.54916	1.2273	0.00064961	-0.46044	-0.00024371	0.76689	0.0004059	529.2814981395538	35.529	0.47635	35.529	35.417	35.893	0					59	18	5	0	0	0	0.0080613	2	12645	12645;12788		145.16	76.369	1	4200600			3775	3994	2179	2192	3842;3843	3842					0.023149208661379816
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2822265625	2	529.281857	1056.54916	0.73269	0.0003878	0.68525	0.00036269	1.4179	0.00075049	529.2819975473117	35.645	0.46768	35.645	35.381	35.849	0					20	9	3	0	0	0	0.0080613	1	13787	13787		145.16	73.86	1	1730800			3776	3994	2179	2192	3844	3844					0.023149208661379816
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2822875976562	2	529.281857	1056.54916	1.6306	0.00086303	-1.3227	-0.00070008	0.30787	0.00016295	529.2809752031388	35.679	0.91362	35.679	35.415	36.329	0					49	18	4	0	0	0	0.0080613	3	13760	13760;13948;13976		145.16	60.24	1	37200000			3777	3994	2179	2192	3845;3846;3847	3845					0.023149208661379816
ATALGYRK	8	Unmodified	_ATALGYRK_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.2580261230469	2	440.255977	878.497401	-0.35339	-0.00015558	-0.4171	-0.00018363	-0.77049	-0.00033921	440.2559400511388	23.688	0.83603	23.688	23.473	24.309	0					64	19	5	0	0	0	0.68754	1	7952	7952		35.201	1.6851	1	1312300	+		3778	15143	2180	2193	3848	3848					0.05329221962892916
ATALHLHPLL	10	Unmodified	_ATALHLHPLL_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.5523376464844	3	362.553715	1084.63931	-0.07043	-2.5535E-05	-3.5078	-0.0012718	-3.5783	-0.0012973	362.55226087682445	33.558	0.35881	33.558	33.399	33.757	0					16	7	3	0	0	0	0.58189	1	12754	12754		36.447	2.5251	1	2932100			3779	7148	2181	2194	3849	3849					0.10038014985207155
ATALPTGTSK	10	Unmodified	_ATALPTGTSK_					0	0	0		nc|ENSG00000196470|Q8IUQ4-3|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.763427734375	2	473.763832	945.513111	-0.12148	-5.7553E-05	-0.53202	-0.00025205	-0.6535	-0.0003096	473.7635495905858	20.938	0.31386	20.938	20.781	21.095	0					14	6	3	0	0	0	0.27065	1	6852	6852		70.816	1.1886	1	320210			3780	11708	2182	2195	3850	3850					0.038174636892904346
ATALPTGTSK	10	Unmodified	_ATALPTGTSK_					0	0	0		nc|ENSG00000196470|Q8IUQ4-3|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7633972167969	2	473.763832	945.513111	-0.1251	-5.9268E-05	-0.44034	-0.00020862	-0.56544	-0.00026788	473.7636025559538	20.8	0.39666	20.8	20.569	20.966	0					21	9	3	0	0	0	0.35046	1	5867	5867		61.691	6.915	1	1232700			3781	11708	2182	2195	3851	3851					0.038174636892904346
ATALPTGTSK	10	Unmodified	_ATALPTGTSK_					0	0	0		nc|ENSG00000196470|Q8IUQ4-3|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7636413574219	2	473.763832	945.513111	-0.58895	-0.00027902	0.07259	3.4391E-05	-0.51636	-0.00024463	473.763827925622	20.9	0.76187	20.9	20.692	21.454	0					42	15	6	0	0	0	0.041183	1	6701	6701		112.3	29.545	1	10610000			3782	11708	2182	2195	3852	3852					0.038174636892904346
ATALRTTAAL	10	Unmodified	_ATALRTTAAL_					0	0	0			REV__ENST00000326587.11_1_X:51639959-51639995:+|nuORF	REV__ENST00000326587.11_1_X:51639959-51639995:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	330.1978454589844	3	330.197708	987.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.898	1	21.898	21.398	22.398	0								0	0	0	0.34115	1	6431	6431		44.377	8.7589	1		+		3783	18356	2183	2196	3853	3853					0.0770114533454489
ATALVEVFP	9	Unmodified	_ATALVEVFP_					0	0	0			REV__ENSG00000078898|ENST00000170150|BPIFB2	REV__ENSG00000078898|ENST00000170150|BPIFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.76361083984375	2	473.765843	945.517133	-2.5525	-0.0012093	-2.0402	-0.00096657	-4.5927	-0.0021759	473.7649274880308	20.817	0.42979	20.817	20.549	20.979	0					19	10	3	0	0	0	0.18605	1	5891	5891		63.306	7.8021	1	902810	+		3784	13275	2184	2197	3854	3854					0.04219553182997515
ATALVTSAAAA	11	Unmodified	_ATALVTSAAAA_					0	0	0			REV__nc|ENSG00000104415|O95388-3|CCN4	REV__nc|ENSG00000104415|O95388-3|CCN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7637023925781	2	473.763832	945.513111	-0.48227	-0.00022848	-0.31786	-0.00015059	-0.80012	-0.00037907	473.7636639671618	20.834	0.43419	20.834	20.599	21.033	0					29	10	4	0	0	0	0.30464	1	5861	5861		62.107	7.3851	1	2272000	+		3785	13726	2185	2198	3855	3855					0.038174636892563285
ATAMARVLRE	10	Unmodified	_ATAMARVLRE_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2098388671875	3	373.209731	1116.60736	0.84612	0.00031578	-0.83728	-0.00031248	0.008845	3.301E-06	373.20966135483764	38.158	1.3268	38.158	37.931	39.257	0					79	46	2	0	0	0	0.65051	1	15159	15159		28.081	3.5623	1	115510			3786	4391	2186	2199	3856	3856					0.05372279239782074
ATAMGAFVR	9	Unmodified	_ATAMGAFVR_					0	0	0		ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.24188232421875	2	462.242012	922.469472	0.11104	5.1329E-05	-0.94547	-0.00043704	-0.83443	-0.00038571	462.24154838002653	31.591	0.20859	31.591	31.489	31.698	0					16	9	2	0	0	0	0.037569	1	10148	10148		101.6	38.294	1	139690			3787	7736	2187	2200	3857	3857					0.005135757111588646
ATAMLFTPVA	10	Unmodified	_ATAMLFTPVA_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.1831359863281	3	341.184411	1020.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.572	1	15.572	15.072	16.072	0								0	0	0	0.35072	1	4285	4285		42.864	6.4175	1		+		3788	17746	2188	2201	3858	3858					0.021958823396403204
ATAMLQSLLK	10	Unmodified	_ATAMLQSLLK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3130493164062	2	538.312635	1074.61072	-0.24126	-0.00012987	2.3028	0.0012396	2.0615	0.0011097	538.3138599236431	43.869	0.069546	43.869	43.813	43.883	0					8	4	3	0	0	0	0.65895	1	14304	14304		27.047	2.8446	1	142490			3789	7382	2189	2202	3859	3859					0.07639529293783198
ATAMLQSLLK	10	Unmodified	_ATAMLQSLLK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.313720703125	2	538.312635	1074.61072	1.9098	0.0010281	-1.0567	-0.00056885	0.85309	0.00045923	538.3122370990355	44.084	0.21303	44.084	43.971	44.184	0					27	12	3	0	0	0	0.1725	1	17185	17185		82.831	26.198	1	646590			3790	7382	2189	2202	3860	3860					0.07639529293783198
ATAMLQSLLK	10	Oxidation (M)	_ATAM(Oxidation (M))LQSLLK_		ATAM(1)LQSLLK		ATAM(60)LQSLLK	0	0	1		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3111572265625	2	546.310092	1090.60563	1.8775	0.0010257	-0.50913	-0.00027815	1.3683	0.00074753	546.3097331786146	37.961	0.17934	37.961	37.902	38.081	0					12	6	3	0	0	0	0.36432	1	14882	14882		60.167	8.9743	1	109000			3791	7382	2189	2203	3861	3861		298			0.0639522543115163
ATAMVTEQK	9	Unmodified	_ATAMVTEQK_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7497253417969	2	489.749867	977.485181	-0.45489	-0.00022278	-0.10562	-5.1728E-05	-0.56052	-0.00027451	489.7498138645902	19.001	0.34899	19.001	18.913	19.262	0					17	8	3	0	0	0	0.020674	1	5680	5680		120.87	38.628	1	1911300			3792	5894	2190	2204	3862	3862					-0.004461825624616722
ATAMVTEQK	9	Unmodified	_ATAMVTEQK_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7498779296875	2	489.749867	977.485181	-1.1979	-0.00058667	0.78201	0.00038299	-0.41588	-0.00020368	489.75037934827463	18.705	0.11984	18.705	18.642	18.762	0					7	4	2	0	0	0	0.095583	1	4938	4938		80.455	16.247	1	109160			3793	5894	2190	2204	3863	3863					-0.004461825624616722
ATAMVTEQK	9	Unmodified	_ATAMVTEQK_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7496337890625	2	489.749867	977.485181	-0.71933	-0.00035229	0.15396	7.5403E-05	-0.56536	-0.00027689	489.7500493069055	18.959	0.16647	18.959	18.85	19.017	0					7	3	3	0	0	0	0.047855	1	5920	5920		96.034	32.607	1	434170			3794	5894	2190	2204	3864	3864					-0.004461825624616722
ATANLEILK	9	Unmodified	_ATANLEILK_					0	0	0			REV__ENSG00000203995|ENST00000371528|ZYG11A	REV__ENSG00000203995|ENST00000371528|ZYG11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.78961181640625	2	486.78985	971.565146	-0.54502	-0.00026531	0.038358	1.8672E-05	-0.50666	-0.00024664	486.78981211324293	31.625	0.31463	31.625	31.471	31.786	0					14	6	3	0	0	0	0.063171	1	11832	11832		90.601	13.283	1	555510	+		3795	17463	2191	2205	3865	3865					0.07822627103053037
ATANLEILK	9	Unmodified	_ATANLEILK_					0	0	0			REV__ENSG00000203995|ENST00000371528|ZYG11A	REV__ENSG00000203995|ENST00000371528|ZYG11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.78985595703125	2	486.78985	971.565146	0.82009	0.00039921	-1.9921	-0.00096973	-1.172	-0.00057052	486.78938199095046	31.61	0.31285	31.61	31.505	31.818	0					10	6	2	0	0	0	0.16806	1	11850	11850		65.465	8.7443	1	452810	+		3796	17463	2191	2205	3866	3866					0.07822627103053037
ATANMLGIRK	10	Unmodified	_ATANMLGIRK_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.87445068359375	3	358.874459	1073.60155	0.724	0.00025983	-0.84833	-0.00030444	-0.12432	-4.4616E-05	358.87419718635937	25.249	0.15477	25.249	25.148	25.303	0					9	3	3	0	0	0	0.65895	1	8595	8595		27.047	1.4733	1	739650			3797	5943	2192	2206	3867	3867					0.06769180728110769
ATANMLGIRK	10	Unmodified	_ATANMLGIRK_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.8084106445312	2	537.808051	1073.60155	0.22471	0.00012085	0.057128	3.0724E-05	0.28184	0.00015158	537.8083488538474	25.235	0.20059	25.235	25.132	25.333	0					10	4	3	0	0	0	0.14176	1	8605	8605		85.862	18.368	1	758680			3798	5943	2192	2206	3868	3868					0.06769180728110769
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2974548339844	2	486.297842	970.581131	0.6906	0.00033584	-1.2882	-0.00062646	-0.59763	-0.00029063	486.29731604112385	28.606	0.81013	28.606	28.486	29.296	0					54	20	5	0	0	0	0.00073892	1	10117	10117		185.55	33.079	1	43774000			3799	11550	2193	2207	3869	3869					0.09466333339946686
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.29840087890625	2	486.297842	970.581131	-0.24005	-0.00011674	-0.22762	-0.00011069	-0.46767	-0.00022743	486.2977331537111	28.407	0.52347	28.407	28.24	28.764	0					35	13	5	0	0	0	0.0025054	1	9397	9397		171.53	4.303	1	7966700			3800	11550	2193	2207	3870	3870					0.09466333339946686
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.29779052734375	2	486.297842	970.581131	0.82762	0.00040247	-1.1593	-0.00056376	-0.33167	-0.00016129	486.29752210092187	28.55	1.2564	28.55	28.343	29.6	0					53	25	5	0	0	0	0.00073892	1	10342	10342		185.55	4.6802	1	55861000			3801	11550	2193	2207	3871	3871					0.09466333339946686
ATAPAPTAHK	10	Unmodified	_ATAPAPTAHK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7637939453125	2	482.764166	963.513779	-0.14107	-6.8103E-05	-0.20954	-0.00010116	-0.35061	-0.00016926	482.76408874562236	14.434	0.24721	14.434	14.289	14.536	0					22	6	6	0	0	0	0.12763	1	3510	3510		90.601	20.973	1	940890			3802	7041	2194	2208	3872	3872					0.030563031289943865
ATAPAPTAHK	10	Unmodified	_ATAPAPTAHK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7626037597656	2	482.764166	963.513779	-1.2985	-0.00062686	0.66097	0.00031909	-0.63752	-0.00030777	482.7645776231615	14.13	0.20226	14.13	14.026	14.228	0					14	10	2	0	0	0	0.65051	1	2989	2989		28.081	0.19925	1	67592			3803	7041	2194	2208	3873	3873					0.030563031289943865
ATAPAPTAHK	10	Unmodified	_ATAPAPTAHK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.76385498046875	2	482.764166	963.513779	0.68464	0.00033052	-2.7508	-0.001328	-2.0661	-0.00099746	482.76278861141043	14.368	0.47956	14.368	14.217	14.697	0					22	10	4	0	0	0	0.026103	1	3723	3723		120.87	38.563	1	862070			3804	7041	2194	2208	3874	3874					0.030563031289943865
ATAPAPTAHK	10	Unmodified	_ATAPAPTAHK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.76385498046875	2	482.764166	963.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.352	1	14.352	13.852	14.852	0								0	0	0	0.012738	1	3550	3550		109.48	21.724	1				3805	7041	2194	2208	3875	3875					0.030563031289943865
ATAPPGVLK	9	Unmodified	_ATAPPGVLK_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.2605285644531	2	427.260728	852.506903	-0.40478	-0.00017295	0.12033	5.1411E-05	-0.28446	-0.00012154	427.26077648746525	24.353	0.79969	24.353	24.179	24.979	0					27	16	2	0	0	0	0.26904	1	8397	8397		53.351	0	1	179910			3806	2369	2195	2209	3876	3876					0.07474990248431368
ATAPPSPLKR	10	Unmodified	_ATAPPSPLKR_					0	0	0		ENST00000475946.5_1_6:7182144-7211943:+|nuORF;nc|ENSG00000124782|Q92766-6|RREB1;nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	ENST00000475946.5_1_6:7182144-7211943:+|nuORF	ENST00000475946.5_1_6:7182144-7211943:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.3082275390625	2	519.308741	1036.60293	0.56539	0.00029361	-0.41977	-0.00021799	0.14562	7.5621E-05	519.8099727116748	20.65	0.11323	20.65	20.585	20.698	0					5	3	2	0	0	0	0.65051	1	5565	5565		28.081	0.19925	1	61906			3807	3395	2196	2210	3877	3877					0.08609138088513646
ATAPSPAAAA	10	Unmodified	_ATAPSPAAAA_					0	0	0			REV__ENSG00000126016|ENST00000371959|AMOT	REV__ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.2163391113281	2	414.216517	826.418482	-0.38939	-0.00016129	1.334	0.00055258	0.94464	0.00039129	414.21658122544795	14.617	0.62167	14.617	14.457	15.079	0					21	12	2	0	0	0	0.41335	1	3641	3641		54.776	5.3348	1	490690	+		3808	14455	2197	2211	3878	3878					-0.0016705006206620965
ATAPVSAAQLK	11	Unmodified	_ATAPVSAAQLK_					0	0	0		nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	nc|ENSG00000148584|Q9NQ94-5|A1CF	nc|ENSG00000148584|Q9NQ94-5|A1CF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.8060302734375	2	528.806031	1055.59751	0.11006	5.8202E-05	0.079787	4.2192E-05	0.18985	0.00010039	528.8060482385504	26.531	0.18797	26.531	26.44	26.628	0					9	4	3	0	0	0	0.54316	1	9172	9172		41.08	1.8272	1	472000			3809	4841	2198	2212	3879	3879					0.07193414506014051
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2777404785156	2	491.277441	980.540328	-0.14492	-7.1198E-05	0.15718	7.7217E-05	0.012253	6.0195E-06	491.27768342147635	20.137	0.22404	20.137	19.997	20.221	0					11	7	2	0	0	0	0.14151	1	5321	5321		88.177	23.97	1	105690			3810	11100	2199	2213	3880	3880					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2775573730469	2	491.277441	980.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.192	1	20.192	19.692	20.692	0								0	0	0	0.27575	1	5600	5600		54.722	8.7704	1				3811	11100	2199	2213	3881	3881					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.27740478515625	2	491.277441	980.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.177	1	20.177	19.677	20.677	0								0	0	0	0.30854	1	5593	5593		49.536	6.6718	1				3812	11100	2199	2213	3882	3882					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.27685546875	2	491.277441	980.540328	-0.063378	-3.1136E-05	-0.61707	-0.00030315	-0.68045	-0.00033429	491.2771019551614	20.354	0.2668	20.354	20.178	20.445	0					9	5	3	0	0	0	0.03454	1	6586	6586		114.89	24.525	1	268670			3813	11100	2199	2213	3883	3883					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2778015136719	2	491.277441	980.540328	0.55564	0.00027297	-0.72847	-0.00035788	-0.17283	-8.491E-05	491.2772742849039	20.198	0.15108	20.198	20.1	20.251	0					5	3	2	0	0	0	0.28675	1	5624	5624		68.846	21.189	1	54464			3814	11100	2199	2213	3884	3884					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2774353027344	2	491.277441	980.540328	-0.077463	-3.8056E-05	0.0076397	3.7532E-06	-0.069824	-3.4303E-05	491.2774533334284	20.181	0.14724	20.181	20.087	20.234	0					6	3	2	0	0	0	0.17315	1	5641	5641		82.75	23.969	1	160810			3815	11100	2199	2213	3885	3885					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2773132324219	2	491.277441	980.540328	-0.56387	-0.00027702	0.014823	7.2821E-06	-0.54905	-0.00026974	491.2774720019972	20.352	0.36694	20.352	20.193	20.56	0					16	7	3	0	0	0	0.073361	1	6441	6441		101.46	27.205	1	809630			3816	11100	2199	2213	3886	3886					0.049279920203161964
ATAQFKINK	9	Unmodified	_ATAQFKINK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7957763671875	2	510.795466	1019.57638	-0.0062007	-3.1673E-06	0.24476	0.00012502	0.23856	0.00012186	510.79552348282596	21.906	0.18041	21.906	21.809	21.99	0					9	4	3	0	0	0	0.035062	1	7023	7023		104.06	13.687	1	588200			3817	4535	2200	2214	3887	3887					0.06737449197191836
ATAQFKINK	9	Unmodified	_ATAQFKINK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.79583740234375	2	510.795466	1019.57638	-0.41251	-0.00021071	0.99234	0.00050688	0.57983	0.00029618	510.7960611481063	21.603	0.096863	21.603	21.546	21.643	0					7	3	3	0	0	0	0.15163	1	6236	6236		67.494	1.0644	1	131480			3818	4535	2200	2214	3888	3888					0.06737449197191836
ATAQFKINK	9	Unmodified	_ATAQFKINK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.79547119140625	2	510.795466	1019.57638	3.0627	0.0015644	-3.5362	-0.0018063	-0.47345	-0.00024184	510.79393241580954	21.815	0.26616	21.815	21.704	21.97	0					9	5	2	0	0	0	0.13726	1	7174	7174		70.816	3.3225	1	851830			3819	4535	2200	2214	3889	3889					0.06737449197191836
ATAQFKINKK	10	Unmodified	_ATAQFKINKK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	383.56463623046875	3	383.564391	1147.67134	0.53731	0.00020609	0.47869	0.00018361	1.016	0.0003897	383.5644974114139	17.882	0.12857	17.882	17.801	17.929	0					5	3	2	0	0	0	0.50287	1	4365	4365		45.022	17.975	1	116350			3820	4535	2201	2215	3890	3890					0.1034138266836635
ATAQFKINKK	10	Unmodified	_ATAQFKINKK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	383.5647277832031	3	383.564391	1147.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.912	1	17.912	17.412	18.412	0								0	0	0	0.4201	1	4586	4586		24.232	8.225	1				3821	4535	2201	2215	3891	3891					0.1034138266836635
ATAQFKINKK	10	Unmodified	_ATAQFKINKK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.56427001953125	3	383.564391	1147.67134	0.1984	7.6101E-05	-0.4112	-0.00015772	-0.2128	-8.1621E-05	383.56419740388674	18.164	0.11879	18.164	18.105	18.224	0					6	2	3	0	0	0	0.45669	1	5539	5539		50.034	21.952	1	438110			3822	4535	2201	2215	3892	3892					0.1034138266836635
ATAQFKINKK	10	Unmodified	_ATAQFKINKK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.5645751953125	3	383.564391	1147.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.006	1	18.006	17.506	18.506	0								0	0	0	0.4201	1	4611	4611		16.007	0.67366	1				3823	4535	2201	2215	3893	3893					0.1034138266836635
ATAQFKINKK	10	Unmodified	_ATAQFKINKK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.5642395019531	3	383.564391	1147.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.991	1	17.991	17.491	18.491	0								0	0	0	0.4201	1	4605	4605		19.263	1.0006	1				3824	4535	2201	2215	3894	3894					0.1034138266836635
ATAQFKINKK	10	Unmodified	_ATAQFKINKK_					0	0	0		NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.56427001953125	3	383.564391	1147.67134	-0.56743	-0.00021765	0.56403	0.00021634	-0.003407	-1.3068E-06	383.5645633796408	18.133	0.11458	18.133	18.076	18.19	0					6	2	3	0	0	0	0.33468	1	5382	5382		63.426	10.338	1	918700			3825	4535	2201	2215	3895	3895					0.1034138266836635
ATAQGTPEK	9	Unmodified	_ATAQGTPEK_					0	0	0		ENSG00000177150|ENST00000651643|FAM210A;ENST00000588475.1_1_18:13666687-13682076:-|nuORF	ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7323913574219	2	451.732532	901.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.147	1	13.147	12.647	13.647	0								0	0	0	0.18541	1	3131	3131		53.089	3.6474	1				3826	6648	2202	2216	3896	3896					-0.004156823789003283
ATAQNIFLN	9	Unmodified	_ATAQNIFLN_					0	0	0			REV__DNAH11|p.L441Ifs*25|1|0.26|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant	REV__DNAH11|p.L441Ifs*25|1|0.26|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2656555175781	2	496.263999	990.513445	2.8658	0.0014222	-0.0099931	-4.9592E-06	2.8558	0.0014173	496.26399472429677	31.199	0.60691	31.199	30.995	31.602	0					23	12	2	0	0	0	0.023928	1	11625	11625		115.49	3.8458	1	9937000	+		3827	12723	2203	2217	3897	3897					0.017808834091283643
ATAQNIMNPK	10	Unmodified	_ATAQNIMNPK_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2828369140625	2	544.281866	1086.54918	1.1683	0.00063588	-0.89658	-0.00048799	0.27172	0.00014789	544.281859052053	23.894	0.3795	23.894	23.715	24.095	0					22	13	2	0	0	0	0.35046	1	6943	6943		61.691	6.915	1	120950			3828	6549	2204	2218	3898	3898					0.009365975944774618
ATAQNIMNPK	10	Unmodified	_ATAQNIMNPK_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2821655273438	2	544.281866	1086.54918	0.36831	0.00020046	-1.2186	-0.00066327	-0.85031	-0.00046281	544.282228597393	24.194	0.501	24.194	23.949	24.45	0					33	11	4	0	0	0	0.12383	1	8071	8071		91.265	17.01	1	678500			3829	6549	2204	2218	3899	3899					0.009365975944774618
ATAQNIMNPK	10	Unmodified	_ATAQNIMNPK_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2821044921875	2	544.281866	1086.54918	1.9675	0.0010709	-2.2595	-0.0012298	-0.29197	-0.00015891	544.2811183581892	24.155	0.56355	24.155	23.847	24.41	0					31	11	4	0	0	0	0.041742	1	8383	8383		112.11	29.802	1	1030400			3830	6549	2204	2218	3900	3900					0.009365975944774618
ATAQNIMNPK	10	Unmodified	_ATAQNIMNPK_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2825317382812	2	544.281866	1086.54918	1.0926	0.00059469	0.61174	0.00033296	1.7044	0.00092765	544.2821466977742	23.963	0.39102	23.963	23.747	24.138	0					17	9	2	0	0	0	0.09653	1	7380	7380		96.034	36.103	1	82817			3831	6549	2204	2218	3901	3901					0.009365975944774618
ATAQNIMNPK	10	Unmodified	_ATAQNIMNPK_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2824096679688	2	544.281866	1086.54918	-1.494	-0.00081316	2.0804	0.0011323	0.5864	0.00031916	544.2836257912285	23.995	0.34701	23.995	23.777	24.124	0					18	8	3	0	0	0	0.065649	1	7367	7367		104.06	8.0232	1	139290			3832	6549	2204	2218	3902	3902					0.009365975944774618
ATAQNIMNPK	10	Unmodified	_ATAQNIMNPK_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2828979492188	2	544.281866	1086.54918	3.6849	0.0020056	-4.404	-0.002397	-0.71906	-0.00039137	544.2806318535087	24.122	0.56799	24.122	23.846	24.414	0					31	11	4	0	0	0	0.022799	1	8255	8255		123.21	16.793	1	1063700			3833	6549	2204	2218	3903	3903					0.009365975944774618
ATARESGPIA	10	Unmodified	_ATARESGPIA_					0	0	0			REV__CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	REV__CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.75872802734375	2	486.759081	971.503609	-0.31276	-0.00015224	-0.14478	-7.0471E-05	-0.45754	-0.00022271	486.75896585449175	29.691	0.37596	29.691	29.557	29.933	0					18	9	3	0	0	0	0.50881	1	10638	10638		44.377	0	1	622040	+		3834	12626	2205	2219	3904	3904					0.016716954037519827
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.5417785644531	3	332.541809	994.603597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.538	1	13.538	13.038	14.038	0								0	0	0	0.27025	1	2668	2668		40.778	6.6056	1				3835	6266	2206	2220	3905	3905					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.30902099609375	2	498.309075	994.603597	0.69122	0.00034444	-1.1053	-0.00055079	-0.4141	-0.00020635	498.3085163407905	13.823	0.28541	13.823	13.744	14.029	0					20	7	4	0	0	0	0.13726	1	3224	3224		54.776	10.66	1	2498400			3836	6266	2206	2220	3906	3906					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.541748046875	3	332.541809	994.603597	0.52206	0.00017361	-0.87886	-0.00029226	-0.3568	-0.00011865	332.54156357093245	13.817	0.32854	13.817	13.733	14.061	0					20	8	4	0	0	0	0.1424	1	3219	3219		69.628	16.691	1	4352700			3837	6266	2206	2220	3907	3907					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.5417175292969	3	332.541809	994.603597	-0.70266	-0.00023366	0.35228	0.00011715	-0.35038	-0.00011652	332.54205106576177	13.581	0.14467	13.581	13.528	13.672	0					9	8	2	0	0	0	0.30951	1	2812	2812		49.442	15.269	1	191040			3838	6266	2206	2220	3908	3908					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.30889892578125	2	498.309075	994.603597	0.82185	0.00040954	-1.3417	-0.00066859	-0.51986	-0.00025905	498.3085047986195	13.832	0.25563	13.832	13.735	13.991	0					10	5	3	0	0	0	0.24334	1	3446	3446		40.778	0	1	1229400			3839	6266	2206	2220	3909	3909					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.5417175292969	3	332.541809	994.603597	0.54109	0.00017994	-0.7068	-0.00023504	-0.1657	-5.5104E-05	332.54155827350286	13.817	0.1518	13.817	13.721	13.873	0					6	3	2	0	0	0	0.25716	1	3458	3458		54.776	15.523	1	2166100			3840	6266	2206	2220	3910	3910					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.3094177246094	2	498.309075	994.603597	0.17531	8.7361E-05	0.43754	0.00021803	0.61286	0.00030539	498.3094408560882	13.584	0.13698	13.584	13.52	13.657	0					14	7	3	0	0	0	0.16806	1	2750	2750		49.442	7.0454	1	273130			3841	6266	2206	2220	3911	3911					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.3089294433594	2	498.309075	994.603597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.794	1	13.794	13.294	14.294	0								0	0	0	0.30009	1	3287	3287		20.947	0	1				3842	6266	2206	2220	3912	3912					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.5417175292969	3	332.541809	994.603597	3.0077	0.0010002	-3.53	-0.0011739	-0.52229	-0.00017368	332.54069602340036	13.741	0.35431	13.741	13.687	14.042	0					11	7	2	0	0	0	0.1424	1	3272	3272		69.628	16.691	1	967450			3843	6266	2206	2220	3913	3913					0.1060797752822964
ATARVMTNK	9	Unmodified	_ATARVMTNK_					0	0	0		nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;nc|ENSG00000100320|O43251-7|RBFOX2;ENSG00000078328|ENST00000550418|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000167281|A6NFN3|RBFOX3;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;nc|ENSG00000100320|O43251-9|RBFOX2;ENSG00000167281|ENST00000693108|RBFOX3;nc|ENSG00000100320|O43251-3|RBFOX2;RBFOX1|p.T351Pfs*7|1|0.34|ENSG00000078328|chr16:7709106-7709106|C/-|frameshift_variant;nc|ENSG00000100320|O43251-2|RBFOX2	nc|ENSG00000100320|O43251-8|RBFOX2	nc|ENSG00000100320|O43251-8|RBFOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2712707519531	2	496.271301	990.528049	-0.35337	-0.00017537	-0.47286	-0.00023467	-0.82623	-0.00041003	496.271306955817	15.277	0.17928	15.277	15.19	15.369	0					11	4	4	0	0	0	0.0088974	1	3900	3900		143.37	53.004	1	1426400			3844	2003	2207	2221	3914	3914					0.03240632285644551
ATASAIEAMK	10	Unmodified	_ATASAIEAMK_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7573547363281	2	496.757692	991.500831	0.71907	0.0003572	-1.2986	-0.00064511	-0.57958	-0.00028791	496.7571936411795	27.05	0.33445	27.05	26.886	27.221	0					11	8	2	0	0	0	0.01518	1	9413	9413		128.6	35.459	1	698670			3845	1973	2208	2222	3915	3915					0.004741039545820058
ATASAIEAMK	10	Unmodified	_ATASAIEAMK_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.757080078125	2	496.757692	991.500831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.893	1	26.893	26.393	27.393	0								0	0	0	0.16204	1	8726	8726		68.846	14.07	1				3846	1973	2208	2222	3916	3916					0.004741039545820058
ATASAIEAMK	10	Unmodified	_ATASAIEAMK_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7579345703125	2	496.757692	991.500831	0.97696	0.00048531	-2.871	-0.0014262	-1.8941	-0.00094089	496.75705235154845	27.044	1.125	27.044	26.885	28.01	0					30	22	2	0	0	0	0.0093015	1	9622	9622		145.46	54.86	1	572330			3847	1973	2208	2222	3917	3917					0.004741039545820058
ATASKNIF	8	Unmodified	_ATASKNIF_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;PYHIN1|p.R201H|1|0.42|ENSG00000163564|chr1:158941999-158941999|G/A|missense_variant	ENST00000485134.1_1_1:158911778-158914889:+|nuORF	ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.23468017578125	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.094	1	21.094	20.594	21.594	0								0	0	0	1.7419	1	6651	6651		29.15	4.9468	1				3848	5577	2209	2223	3918	3918					0.0236582683467077
ATASLGVIHK	10	Unmodified	_ATASLGVIHK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7951965332031	2	498.795466	995.57638	-1.2368	-0.00061691	1.1206	0.00055894	-0.1162	-5.7962E-05	498.7961458102678	23.608	0.13591	23.608	23.533	23.669	0					14	5	3	0	0	0	0.097781	1	7103	7103		95.815	18.498	1	678590			3849	6444	2210	2224	3919	3919					0.07841449197178463
ATASLGVIHK	10	Unmodified	_ATASLGVIHK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.8659973144531	3	332.86607	995.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.823	1	23.823	23.323	24.323	0								0	0	0	0.35368	1	8260	8260		54.722	19.57	1				3850	6444	2210	2224	3920	3920					0.07841449197178463
ATASLGVIHK	10	Unmodified	_ATASLGVIHK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.79534912109375	2	498.795466	995.57638	-0.67645	-0.00033741	0.4915	0.00024516	-0.18495	-9.2253E-05	498.7957306065426	23.833	0.41708	23.833	23.679	24.096	0					19	8	4	0	0	0	3.3275E-10	1	8252	8252		219.56	86.806	1	2961700			3851	6444	2210	2224	3921	3921					0.07841449197178463
ATASLPGPNR	10	Unmodified	_ATASLPGPNR_					0	0	0			REV__CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2674255371094	2	492.267073	982.519593	-1.2639	-0.00062219	0.67969	0.00033459	-0.58424	-0.0002876	492.2674297357468	21.006	0.46617	21.006	20.927	21.393	0					31	14	3	0	0	0	0.50881	1	6080	6080		44.377	5.1244	1	6109800	+		3852	12415;13228	2211	2225	3922	3922					0.02763401640675056
ATASPIVAR	9	Unmodified	_ATASPIVAR_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2615966796875	2	443.261259	884.507966	0.71965	0.00031899	-0.30299	-0.0001343	0.41666	0.00018469	443.26117276082635	21.932	0.1989	21.932	21.813	22.012	0					12	5	3	0	0	0	0.01768	1	6113	6113		125.81	32.619	1	339950			3853	3735	2212	2226	3923	3923					0.061092046173257586
ATASPIVAR	9	Unmodified	_ATASPIVAR_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2614440917969	2	443.261259	884.507966	0.24866	0.00011022	0.41626	0.00018451	0.66492	0.00029473	443.2613551416065	21.944	0.19294	21.944	21.841	22.034	0					8	5	2	0	0	0	0.12239	1	6108	6108		74.255	22.92	1	130900			3854	3735	2212	2226	3924	3924					0.061092046173257586
ATASPIVAR	9	Unmodified	_ATASPIVAR_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.26104736328125	2	443.261259	884.507966	-0.10702	-4.744E-05	-0.22636	-0.00010034	-0.33339	-0.00014778	443.261170199594	22.274	0.28196	22.274	22.132	22.414	0					17	6	3	0	0	0	0.012231	1	7198	7198		136.27	58.951	1	2307100			3855	3735	2212	2226	3925	3925					0.061092046173257586
ATASPIVAR	9	Unmodified	_ATASPIVAR_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2611389160156	2	443.261259	884.507966	0.58199	0.00025797	-0.20657	-9.1566E-05	0.37541	0.00016641	443.2608352885439	22.258	0.28122	22.258	22.165	22.446	0					17	6	4	0	0	0	0.023928	1	7211	7211		115.49	45.866	1	1345900			3856	3735	2212	2226	3926	3926					0.061092046173257586
ATASPIVAR	9	Unmodified	_ATASPIVAR_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.26116943359375	2	443.261259	884.507966	-0.24675	-0.00010937	-0.28637	-0.00012693	-0.53311	-0.00023631	443.26113794708795	22.179	0.36237	22.179	22.021	22.384	0					17	7	3	0	0	0	0.035062	1	7429	7429		104.06	40.751	1	4744000			3857	3735	2212	2226	3927	3927					0.061092046173257586
ATASPIVAR	9	Unmodified	_ATASPIVAR_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2610778808594	2	443.261259	884.507966	0.41671	0.00018471	-0.52818	-0.00023412	-0.11148	-4.9413E-05	443.26100208886976	22.012	0.27521	22.012	21.912	22.187	0					14	6	3	0	0	0	0.10915	1	6471	6471		77.318	22.541	1	538710			3858	3735	2212	2226	3928	3928					0.061092046173257586
ATASPIVAR	9	Unmodified	_ATASPIVAR_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2610168457031	2	443.261259	884.507966	-0.49658	-0.00022011	0.1302	5.7714E-05	-0.36637	-0.0001624	443.2612720235387	22.145	0.41659	22.145	21.936	22.353	0					20	8	4	0	0	0	0.032052	1	7308	7308		107.01	33.033	1	6605000			3859	3735	2212	2226	3929	3929					0.061092046173257586
ATASPLPK	8	Unmodified	_ATASPLPK_					0	0	0			REV__nc|ENSG00000075151|O43432-4|EIF4G3	REV__nc|ENSG00000075151|O43432-4|EIF4G3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.7317810058594	2	392.731803	783.449054	-0.15922	-6.2529E-05	0.097514	3.8297E-05	-0.061702	-2.4232E-05	392.7317301941334	19.497	0.52304	19.497	19.193	19.716	0					19	12	2	0	0	0	0.59411	1	5278	5278		50.025	0	1	159090	+		3860	12786	2213	2227	3930	3930					0.0486672832299746
ATASRVLTH	9	Unmodified	_ATASRVLTH_					0	0	0		ENST00000482818.1_1_22:29724072-29724282:-|nuORF	ENST00000482818.1_1_22:29724072-29724282:-|nuORF	ENST00000482818.1_1_22:29724072-29724282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2693176269531	2	478.269616	954.524678	-0.2695	-0.00012889	-1.0716	-0.00051253	-1.3411	-0.00064143	478.26912554851225	13.026	0.91368	13.026	12.711	13.624	0					57	25	6	0	0	0	0.0090225	1	2897	2897		143.11	3.1364	1	4094900			3861	9972	2214	2228	3931	3931					0.045597055032772005
ATASTTLLTGL	11	Unmodified	_ATASTTLLTGL_					0	0	0			REV__TRIM3|p.A314T|1|0.46|ENSG00000110171|chr11:6456786-6456786|C/T|missense_variant	REV__TRIM3|p.A314T|1|0.46|ENSG00000110171|chr11:6456786-6456786|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.201416015625	3	350.201007	1047.58119	1.469	0.00051446	-0.1673	-5.8589E-05	1.3017	0.00045587	350.20089984300927	18.892	0.29537	18.892	18.8	19.096	0					14	6	4	0	0	0	0.66915	1	5750	5750		30.569	5.4429	1	1957400	+		3862	22231	2215	2229	3932	3932					0.05930288549279794
ATASVVKEK	9	Unmodified	_ATASVVKEK_					0	0	0		ENST00000474414.5_1_1:32849477-32859770:-|nuORF;ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7738952636719	2	466.7742	931.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.764	1	14.764	14.264	15.264	0								0	0	0	0.03526	1	3096	3096		93.143	24.356	1				3863	5337	2216	2230	3933	3933					0.06534054068958994
ATASVVKEK	9	Unmodified	_ATASVVKEK_					0	0	0		ENST00000474414.5_1_1:32849477-32859770:-|nuORF;ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7738037109375	2	466.7742	931.533846	-0.66328	-0.0003096	-0.026534	-1.2385E-05	-0.68982	-0.00032199	466.7741739765924	15.061	0.14962	15.061	14.967	15.117	0					5	3	2	0	0	0	0.00324	1	3819	3819		167.23	76.859	1	940210			3864	5337	2216	2230	3934	3934					0.06534054068958994
ATASVVKEK	9	Unmodified	_ATASVVKEK_					0	0	0		ENST00000474414.5_1_1:32849477-32859770:-|nuORF;ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7735290527344	2	466.7742	931.533846	-1.152	-0.0005377	0.33428	0.00015603	-0.81768	-0.00038167	466.77428565735823	14.811	0.052832	14.811	14.773	14.825	0					4	2	2	0	0	0	0.07136	1	3265	3265		87.696	21.267	1	103080			3865	5337	2216	2230	3935	3935					0.06534054068958994
ATASVVKEK	9	Unmodified	_ATASVVKEK_					0	0	0		ENST00000474414.5_1_1:32849477-32859770:-|nuORF;ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	ENST00000474414.5_1_1:32849477-32859770:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.77392578125	2	466.7742	931.533846	-1.1861	-0.00055363	0.67184	0.0003136	-0.51423	-0.00024003	466.77449177531537	15.07	0.16997	15.07	14.96	15.13	0					7	3	3	0	0	0	0.037924	1	4056	4056		101.25	26.209	1	826810			3866	5337	2216	2230	3936	3936					0.06534054068958994
ATATANQIILK	11	Unmodified	_ATATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.3403930664062	2	572.340238	1142.66592	0.07959	4.5553E-05	0.48714	0.00027881	0.56673	0.00032436	572.3405406638975	30.05	0.33339	30.05	29.954	30.287	0					34	12	4	0	0	0	0.00032121	1	9814	9814		142.36	51.76	1	1466000			3867	11550	2217	2231	3937	3937					0.10029659085898857
ATATANQIILK	11	Unmodified	_ATATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.3402709960938	2	572.340238	1142.66592	0.61649	0.00035284	-0.16376	-9.3725E-05	0.45274	0.00025912	572.3401158859348	30.068	0.25789	30.068	29.971	30.229	0					15	6	3	0	0	0	2.9096E-05	1	10182	10182		169.65	54.158	1	856710			3868	11550	2217	2231	3938	3938					0.10029659085898857
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2558288574219	2	468.25584	934.497126	0.032399	1.5171E-05	-0.59681	-0.00027946	-0.56441	-0.00026429	468.2554880789118	19.96	0.28234	19.96	19.862	20.145	0					20	8	4	0	0	0	0.0047071	1	5249	5249		159.28	49.156	1	1150600			3869	3862	2218	2232	3939	3939					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.25567626953125	2	468.25584	934.497126	0.30191	0.00014137	-1.1022	-0.00051612	-0.80031	-0.00037475	468.2552245136395	20.296	1.086	20.296	20.195	21.281	0					39	24	4	0	0	0	0.0023831	1	6263	6263		172.25	62.129	1	12280000			3870	3862	2218	2232	3940	3940					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2554931640625	2	468.25584	934.497126	-1.0973	-0.0005138	0.56012	0.00026228	-0.53713	-0.00025152	468.2560726452331	20.005	0.22246	20.005	19.906	20.128	0					19	7	4	0	0	0	0.0047071	1	5510	5510		159.28	52.268	1	829980			3871	3862	2218	2232	3941	3941					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2556457519531	2	468.25584	934.497126	-0.12892	-6.037E-05	-0.35832	-0.00016779	-0.48724	-0.00022816	468.25562873198817	20.187	0.41602	20.187	20.079	20.495	0					20	8	3	0	0	0	0.0023831	1	6513	6513		172.25	62.129	1	5059000			3872	3862	2218	2232	3942	3942					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2556457519531	2	468.25584	934.497126	0.63628	0.00029794	-1.2113	-0.00056718	-0.57498	-0.00026924	468.2552430020944	20.221	0.2683	20.221	20.062	20.331	0					14	5	4	0	0	0	0.0047071	1	6505	6505		159.28	40.533	1	5040400			3873	3862	2218	2232	3943	3943					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.25531005859375	2	468.25584	934.497126	-0.20379	-9.5425E-05	-0.19658	-9.2052E-05	-0.40037	-0.00018748	468.25572487699486	20.031	0.2259	20.031	19.932	20.158	0					11	5	3	0	0	0	0.0076184	1	5546	5546		146.79	48.156	1	788850			3874	3862	2218	2232	3944	3944					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.25555419921875	2	468.25584	934.497126	-0.70447	-0.00032987	0.071019	3.3255E-05	-0.63345	-0.00029661	468.25587261690305	20.053	0.27064	20.053	19.919	20.189	0					18	6	4	0	0	0	0.0016668	1	5558	5558		176.44	41.634	1	1285800			3875	3862	2218	2232	3945	3945					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2555847167969	2	468.25584	934.497126	-0.51421	-0.00024078	-0.3301	-0.00015457	-0.8443	-0.00039535	468.25558181058733	20.202	0.51445	20.202	20.094	20.609	0					28	10	5	0	0	0	3.4569E-05	1	6365	6365		199.7	64.894	1	11393000			3876	3862	2218	2232	3946	3946					0.027257574523787298
ATATGARKFLI	11	Unmodified	_ATATGARKFLI_					0	0	0		nc|ENSG00000160282|O95954-3|FTCD;ENSG00000160282|ENST00000397746|FTCD;nc|ENSG00000160282|O95954-2|FTCD	nc|ENSG00000160282|O95954-3|FTCD	nc|ENSG00000160282|O95954-3|FTCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.5642395019531	3	383.564391	1147.67134	0.5977	0.00022926	-0.95948	-0.00036802	-0.36177	-0.00013876	383.56395792543265	18.167	0.21105	18.167	18.06	18.271	0					7	4	3	0	0	0	0.40021	1	5396	5396		51.528	15.21	1	1207700			3877	5354	2219	2233	3947	3947					0.1034138266836635
ATATGTEILK	10	Unmodified	_ATATGTEILK_					0	0	0		nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000563419.5_1_16:66858748-66864862:-|nuORF;ENST00000569963.1_1_16:66860370-66864856:-|nuORF;ENST00000564040.6_1_16:66857135-66864856:-|nuORF;ENST00000562757.5_1_16:66857380-66864856:-|nuORF	nc|ENSG00000159593|Q13564-2|NAE1	nc|ENSG00000159593|Q13564-2|NAE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7846374511719	2	502.784764	1003.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.897	1	25.897	25.397	26.397	0								0	0	0	0.2634	1	7806	7806		56.434	5.2411	1				3878	5323	2220	2234	3948	3948					0.05334019377812638
ATATGTEILK	10	Unmodified	_ATATGTEILK_					0	0	0		nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000563419.5_1_16:66858748-66864862:-|nuORF;ENST00000569963.1_1_16:66860370-66864856:-|nuORF;ENST00000564040.6_1_16:66857135-66864856:-|nuORF;ENST00000562757.5_1_16:66857380-66864856:-|nuORF	nc|ENSG00000159593|Q13564-2|NAE1	nc|ENSG00000159593|Q13564-2|NAE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.78448486328125	2	502.784764	1003.55498	-0.90231	-0.00045367	0.96433	0.00048485	0.062025	3.1185E-05	502.7852184312945	25.892	0.24419	25.892	25.76	26.005	0					8	4	2	0	0	0	0.31613	1	8083	8083		65.465	16.024	1	286060			3879	5323	2220	2234	3949	3949					0.05334019377812638
ATATGTEILK	10	Unmodified	_ATATGTEILK_					0	0	0		nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000563419.5_1_16:66858748-66864862:-|nuORF;ENST00000569963.1_1_16:66860370-66864856:-|nuORF;ENST00000564040.6_1_16:66857135-66864856:-|nuORF;ENST00000562757.5_1_16:66857380-66864856:-|nuORF	nc|ENSG00000159593|Q13564-2|NAE1	nc|ENSG00000159593|Q13564-2|NAE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.78485107421875	2	502.784764	1003.55498	0.98932	0.00049742	-1.015	-0.00051031	-0.025642	-1.2892E-05	502.78421668209506	26.125	0.30872	26.125	26.017	26.326	0					16	6	3	0	0	0	0.00066365	1	9324	9324		185.72	84.118	1	2161300			3880	5323	2220	2234	3950	3950					0.05334019377812638
ATATGTEILK	10	Unmodified	_ATATGTEILK_					0	0	0		nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000563419.5_1_16:66858748-66864862:-|nuORF;ENST00000569963.1_1_16:66860370-66864856:-|nuORF;ENST00000564040.6_1_16:66857135-66864856:-|nuORF;ENST00000562757.5_1_16:66857380-66864856:-|nuORF	nc|ENSG00000159593|Q13564-2|NAE1	nc|ENSG00000159593|Q13564-2|NAE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7845458984375	2	502.784764	1003.55498	0.1338	6.7273E-05	-0.85508	-0.00042992	-0.72128	-0.00036265	502.7842911422199	25.958	0.35531	25.958	25.778	26.133	0					13	6	3	0	0	0	0.014024	1	8275	8275		129.42	33.231	1	339210			3881	5323	2220	2234	3951	3951					0.05334019377812638
ATATGTEILK	10	Unmodified	_ATATGTEILK_					0	0	0		nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000563419.5_1_16:66858748-66864862:-|nuORF;ENST00000569963.1_1_16:66860370-66864856:-|nuORF;ENST00000564040.6_1_16:66857135-66864856:-|nuORF;ENST00000562757.5_1_16:66857380-66864856:-|nuORF	nc|ENSG00000159593|Q13564-2|NAE1	nc|ENSG00000159593|Q13564-2|NAE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.78436279296875	2	502.784764	1003.55498	-0.48442	-0.00024356	0.0057727	2.9024E-06	-0.47865	-0.00024066	502.7847374329632	26.06	0.31617	26.06	25.949	26.265	0					17	6	4	0	0	0	0.15477	1	9193	9193		85.862	27.632	1	2051600			3882	5323	2220	2234	3952	3952					0.05334019377812638
ATATIATLQK	10	Unmodified	_ATATIATLQK_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.29998779296875	2	509.300581	1016.58661	-0.10656	-5.4271E-05	-1.0704	-0.00054513	-1.1769	-0.0005994	509.30046208268965	26.384	0.12831	26.384	26.32	26.448	0					7	4	2	0	0	0	0.5155	1	8016	8016		43.651	6.4917	1	101770			3883	5595	2221	2235	3953	3953					0.07898012131761334
ATATIATLQK	10	Unmodified	_ATATIATLQK_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.30084228515625	2	509.300581	1016.58661	-0.018425	-9.3839E-06	-0.38217	-0.00019464	-0.4006	-0.00020402	509.30078010163413	26.666	0.19638	26.666	26.564	26.76	0					8	4	2	0	0	0	0.092915	1	9218	9218		96.665	47.224	1	415470			3884	5595	2221	2235	3954	3954					0.07898012131761334
ATATLHVL	8	Unmodified	_ATATLHVL_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB8|p.G781Wfs*9|1|0.43|ENSG00000120322|chr5:141180370-141180371|-/T|frameshift_variant;ENSG00000113212|ENST00000231137|PCDHB7;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000112852|ENST00000194155|PCDHB2;ENSG00000120322|ENST00000239444|PCDHB8;nc|ENSG00000290894|Q96TA0|PCDHB18P;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000120328|ENST00000239450|PCDHB12;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000272674|ENST00000609684|PCDHB16	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000120328|ENST00000239450|PCDHB12;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2449951171875	2	413.245078	824.475603	1.025	0.00042356	0.21962	9.0758E-05	1.2446	0.00051431	413.24521110621214	30.919	0.393	30.919	30.788	31.181	0					15	9	2	0	0	0	0.25248	1	11194	11194		138.48	9.6638	1	972110			3885	2784;2785;2786;3167;8091	2222	2236	3955	3955					0.056344172143212745
ATATLHVL	8	Unmodified	_ATATLHVL_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB8|p.G781Wfs*9|1|0.43|ENSG00000120322|chr5:141180370-141180371|-/T|frameshift_variant;ENSG00000113212|ENST00000231137|PCDHB7;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000112852|ENST00000194155|PCDHB2;ENSG00000120322|ENST00000239444|PCDHB8;nc|ENSG00000290894|Q96TA0|PCDHB18P;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000120328|ENST00000239450|PCDHB12;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000272674|ENST00000609684|PCDHB16	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000120328|ENST00000239450|PCDHB12;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.2449951171875	2	413.245078	824.475603	-1.4524	-0.00060019	1.4107	0.00058297	-0.041686	-1.7226E-05	413.24612701813436	30.708	0.36999	30.708	30.445	30.815	0					20	13	2	0	0	0	0.52345	1	10087	10087		57.811	7.7867	1	117620			3886	2784;2785;2786;3167;8091	2222	2236	3956	3956					0.056344172143212745
ATATLHVL	8	Unmodified	_ATATLHVL_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB8|p.G781Wfs*9|1|0.43|ENSG00000120322|chr5:141180370-141180371|-/T|frameshift_variant;ENSG00000113212|ENST00000231137|PCDHB7;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000112852|ENST00000194155|PCDHB2;ENSG00000120322|ENST00000239444|PCDHB8;nc|ENSG00000290894|Q96TA0|PCDHB18P;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000120328|ENST00000239450|PCDHB12;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000272674|ENST00000609684|PCDHB16	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000120328|ENST00000239450|PCDHB12;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000113209|ENST00000231134|PCDHB5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.24505615234375	2	413.245078	824.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.849	1	30.849	30.349	31.349	0								0	0	0	1.7419	1	11466	11466		128.82	9.5945	1				3887	2784;2785;2786;3167;8091	2222	2236	3957	3957					0.056344172143212745
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7739562988281	2	484.7742	967.533846	0.035155	1.7042E-05	-0.57149	-0.00027705	-0.53634	-0.00026	484.7739721162254	32.189	0.28432	32.189	32.09	32.375	0					26	12	3	0	0	0	0.0792	1	10371	10371		84.916	18.486	1	175830			3888	2039	2223	2237	3958	3958					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7742004394531	2	484.7742	967.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.491	1	32.491	31.991	32.991	0								0	0	0	0.035155	1	11933	11933		93.195	26.766	1				3889	2039	2223	2237	3959	3959					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7740478515625	2	484.7742	967.533846	-0.22289	-0.00010805	-0.19925	-9.6591E-05	-0.42213	-0.00020464	484.77408612085	32.465	0.33992	32.465	32.369	32.709	0					25	8	4	0	0	0	0.0033161	1	11909	11909		166.78	64.009	1	1064700			3890	2039	2223	2237	3960	3960					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.774169921875	2	484.7742	967.533846	-1.2349	-0.00059864	0.81514	0.00039516	-0.41975	-0.00020349	484.77442789592095	32.227	0.32975	32.227	32.139	32.469	0					26	14	3	0	0	0	0.1424	1	10724	10724		69.628	23.655	1	302230			3891	2039	2223	2237	3961	3961					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7738952636719	2	484.7742	967.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.425	1	32.425	31.925	32.925	0								0	0	0	2.0556E-10	1	12323	12323		224.43	86.185	1				3892	2039	2223	2237	3962	3962					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.77386474609375	2	484.7742	967.533846	-0.25643	-0.00012431	-0.4178	-0.00020254	-0.67423	-0.00032685	484.77393071862303	32.24	0.25765	32.24	32.108	32.366	0					12	7	3	0	0	0	0.0033161	1	11182	11182		166.78	76.413	1	216010			3893	2039	2223	2237	3963	3963					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7742919921875	2	484.7742	967.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.435	1	32.435	31.935	32.935	0								0	0	0	0.0092669	1	12229	12229		172.03	84.277	1				3894	2039	2223	2237	3964	3964					0.04878054068956317
ATATLIIEHK	10	Unmodified	_ATATLIIEHK_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.2168273925781	3	366.21688	1095.62881	0.47385	0.00017353	-0.5448	-0.00019952	-0.070951	-2.5983E-05	366.216652054137	26.078	0.26114	26.078	25.986	26.247	0					18	6	4	0	0	0	0.59255	1	8959	8959		35.178	2.1388	1	1027100			3895	2039	2224	2238	3965	3965					0.08481987540153568
ATATLIIEHK	10	Unmodified	_ATATLIIEHK_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.822265625	2	548.821681	1095.62881	0.26899	0.00014763	0.6525	0.00035811	0.92149	0.00050573	548.8219987996464	26.059	0.26606	26.059	25.951	26.217	0					12	5	3	0	0	0	5.5512E-06	1	9291	9291		190.62	57.865	1	1276900			3896	2039	2224	2238	3966	3966					0.08481987540153568
ATATLIIEHK	10	Unmodified	_ATATLIIEHK_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.2169189453125	3	366.21688	1095.62881	0.48094	0.00017613	-0.51319	-0.00018794	-0.032249	-1.181E-05	366.21661110928994	26.059	0.26606	26.059	25.951	26.217	0					10	5	3	0	0	0	0.45669	1	9292	9292		50.034	9.9753	1	712570			3897	2039	2224	2238	3967	3967					0.08481987540153568
ATATLQVL	8	Unmodified	_ATATLQVL_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	408.7452392578125	2	408.744911	815.475269	-1.4074	-0.00057525	1.1796	0.00048217	-0.22771	-9.3077E-05	408.7454428700217	39.025	0.098228	39.025	38.993	39.091	0					8	5	2	0	0	0	0.27512	1	13135	13135		90.777	5.4172	1	57666			3898	2788	2225	2239	3968	3968					0.060149974944692985
ATATLQVL	8	Unmodified	_ATATLQVL_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.7449951171875	2	408.744911	815.475269	0.051547	2.107E-05	-0.34434	-0.00014075	-0.29279	-0.00011968	408.74473922789497	39.26	0.21639	39.26	39.132	39.349	0					11	7	2	0	0	0	0.25873	1	15432	15432		96.19	2.184	1	72302			3899	2788	2225	2239	3969	3969					0.060149974944692985
ATATLQVL	8	Unmodified	_ATATLQVL_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.7449951171875	2	408.744911	815.475269	-0.52564	-0.00021485	0.69584	0.00028442	0.17019	6.9565E-05	408.74518497779184	39.195	0.32499	39.195	39.079	39.404	0					14	7	3	0	0	0	0.24622	1	15453	15453		108.09	1.6723	1	236990			3900	2788	2225	2239	3970	3970					0.060149974944692985
ATATPSKTR	9	Unmodified	_ATATPSKTR_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7608337402344	2	466.761623	931.508694	-0.66406	-0.00030996	-0.017015	-7.9418E-06	-0.68107	-0.0003179	466.7616689169038	11.816	0.23187	11.816	11.677	11.909	0					14	8	2	0	0	0	0.28897	1	2331	2331		51.193	19.663	1	248340			3901	3057;11390	2226	2240	3971	3971					0.040199992663815465
ATATPSKTR	9	Unmodified	_ATATPSKTR_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7611389160156	2	466.761623	931.508694	0.65819	0.00030722	1.0792	0.00050372	1.7374	0.00081094	466.76211849274904	11.967	0.99271	11.967	11.65	12.642	0					46	26	2	0	0	0	0.16806	1	2497	2497		65.465	19.513	1	2536800			3902	3057;11390	2226	2240	3972	3972					0.040199992663815465
ATATPSKTR	9	Unmodified	_ATATPSKTR_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.761962890625	2	466.761623	931.508694	2.6384	0.0012315	-0.53187	-0.00024826	2.1065	0.00098323	466.76157023914635	11.885	0.45473	11.885	11.68	12.135	0					24	15	3	0	0	0	0.10915	1	2341	2341		77.318	27.876	1	677700			3903	3057;11390	2226	2240	3973	3973					0.040199992663815465
ATATTEALPL	10	Unmodified	_ATATTEALPL_					0	0	0		nc|ENSG00000041982|P24821-3|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-3|TNC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.27099609375	2	494.27149	986.528426	0.047175	2.3317E-05	-0.19728	-9.7507E-05	-0.1501	-7.419E-05	494.2711862350827	30.689	0.37139	30.689	30.504	30.875	0					21	10	3	0	0	0	0.58896	1	10462	10462		35.618	1.4457	1	401910			3904	1197	2227	2241	3974	3974					0.034623304864680904
ATATTEALPL	10	Unmodified	_ATATTEALPL_					0	0	0		nc|ENSG00000041982|P24821-3|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-3|TNC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.27130126953125	2	494.27149	986.528426	0.90049	0.00044509	-1.1688	-0.00057773	-0.26836	-0.00013264	494.2707974704539	30.873	0.56144	30.873	30.663	31.224	0					32	11	4	0	0	0	0.52707	1	11465	11465		42.396	8.2236	1	3041400			3905	1197	2227	2241	3975	3975					0.034623304864680904
ATATTSTATSK	11	Unmodified	_ATATTSTATSK_					0	0	0		ENSG00000064393|ENST00000406875|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;nc|ENSG00000064393|Q9H2X6-2|HIPK2	ENSG00000064393|ENST00000406875|HIPK2	ENSG00000064393|ENST00000406875|HIPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2667846679688	2	520.266936	1038.51932	1.6783	0.00087316	-1.7496	-0.00091026	-0.071322	-3.7106E-05	520.2659041489728	13.424	0.18129	13.424	13.376	13.557	0					5	4	2	0	0	0	0.16013	1	3277	3277		79.07	36.674	1	280270			3906	1347	2228	2242	3976	3976					0.0015993713013813249
ATATVAALQEK	11	Unmodified	_ATATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.8099365234375	2	551.808771	1101.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.984	1	25.984	25.484	26.484	0								0	0	0	0.2788	1	7843	7843		55.084	6.4824	1				3907	3270	2229	2243	3977	3977					0.05625093297840067
ATATVAALQEK	11	Unmodified	_ATATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.80908203125	2	551.808771	1101.60299	0.10376	5.7257E-05	2.6224	0.0014471	2.7262	0.0015043	551.8090266071331	26.243	0.20821	26.243	26.101	26.309	0					8	4	3	0	0	0	0.45905	1	9386	9386		47.228	6.4495	1	156360			3908	3270	2229	2243	3978	3978					0.05625093297840067
ATATVSVGK	9	Unmodified	_ATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.23992919921875	2	417.239993	832.465432	0.068299	2.8497E-05	-0.60644	-0.00025303	-0.53814	-0.00022453	417.2396925250126	19.091	0.51103	19.091	18.984	19.495	0					25	10	4	0	0	0	0.0097668	1	5961	5961		141.52	69.643	1	14822000			3909	8044;11109	2230	2244	3979	3979					0.04249809489101608
ATATVSVGK	9	Unmodified	_ATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.2398986816406	2	417.239993	832.465432	0.95154	0.00039702	-1.2047	-0.00050267	-0.25321	-0.00010565	417.239538994883	19.074	0.562	19.074	18.917	19.479	0					32	11	5	0	0	0	0.017421	1	5976	5976		126.24	55.426	1	21057000			3910	8044;11109	2230	2244	3980	3980					0.04249809489101608
ATATVSVGK	9	Unmodified	_ATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.2401123046875	2	417.239993	832.465432	0.093471	3.9E-05	-0.26799	-0.00011182	-0.17452	-7.2815E-05	417.2398808330722	18.907	0.23219	18.907	18.815	19.048	0					14	5	4	0	0	0	0.017421	1	5017	5017		126.24	55.426	1	2499300			3911	8044;11109	2230	2244	3981	3981					0.04249809489101608
ATATVSVGK	9	Unmodified	_ATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.2399597167969	2	417.239993	832.465432	-0.054065	-2.2558E-05	-0.28268	-0.00011795	-0.33675	-0.0001405	417.2398813054883	18.917	0.4012	18.917	18.803	19.205	0					20	9	4	0	0	0	0.013878	1	5012	5012		132.76	58.503	1	3408800			3912	8044;11109	2230	2244	3982	3982					0.04249809489101608
ATATVSVGK	9	Unmodified	_ATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.2400817871094	2	417.239993	832.465432	-0.31263	-0.00013044	-0.19693	-8.2167E-05	-0.50956	-0.00021261	417.2399329157759	19.055	0.809	19.055	18.897	19.706	0					34	16	5	0	0	0	0.015496	2	5808	5808;5932		129.42	57.544	1	21300000			3913	8044;11109	2230	2244	3983;3984	3983					0.04249809489101608
ATATVYFKR	9	Unmodified	_ATATVYFKR_					0	0	0		ENSG00000112237|ENST00000520429|CCNC;ENST00000523639.5_1_6:99998829-100016472:-|nuORF	ENSG00000112237|ENST00000520429|CCNC	ENSG00000112237|ENST00000520429|CCNC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.796142578125	2	528.795466	1055.57638	0.28591	0.00015119	1.3863	0.00073307	1.6722	0.00088425	528.7962332709548	24.325	0.11347	24.325	24.23	24.343	0					6	2	3	0	0	0	0.054723	1	8496	8496		87.696	23.489	1	159320			3914	2724	2231	2245	3985	3985					0.050814491971550524
ATAVAAVSQ	9	Unmodified	_ATAVAAVSQ_					0	0	0			REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.2246398925781	2	409.224342	816.434132	-0.51389	-0.0002103	1.0564	0.0004323	0.54249	0.000222	409.22477868981844	16.259	0.16775	16.259	16.149	16.316	0					8	3	3	0	0	0	0.035062	1	4455	4455		104.06	19.141	1	463970	+		3915	18555	2232	2246	3986	3986					0.018572364549982012
ATAVAGAVAGA	11	Unmodified	_ATAVAGAVAGA_					0	0	0		CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant;CCDC112|p.E223Sfs*20|2|0.29|ENSG00000164221|chr5:115275219-115275219|T/-|frameshift_variant;ENSG00000164221|ENST00000379611|CCDC112;ENST00000503027.1_1_5:114615459-114632276:-|nuORF	CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.73760986328125	2	429.737617	857.460681	-0.89516	-0.00038468	0.9895	0.00042523	0.09434	4.0541E-05	429.73805736256287	14.885	0.21679	14.885	14.762	14.978	0					15	9	2	0	0	0	0.33433	1	3293	3293		58.782	7.4465	1	134370			3916	393	2233	2247	3987	3987					0.026249253463333844
ATAVAHCKR	9	Unmodified	_ATAVAHCKR_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.75762939453125	2	478.758361	955.502169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.95	1	12.95	12.45	13.45	0								0	0	0	0.1219	1	2497	2497		66.429	16.405	1				3917	2334	2234	2248	3988	3988					0.022637828340066335
ATAVAHCKR	9	Unmodified	_ATAVAHCKR_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7582092285156	2	478.758361	955.502169	-0.25531	-0.00012223	-0.98906	-0.00047352	-1.2444	-0.00059575	478.75837614458015	13.148	0.12146	13.148	13.105	13.227	0					7	3	3	0	0	0	0.12834	1	2935	2935		72.879	12.761	1	338820			3918	2334	2234	2248	3989	3989					0.022637828340066335
ATAVAHCKR	9	Unmodified	_ATAVAHCKR_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7580261230469	2	478.758361	955.502169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.925	1	12.925	12.425	13.425	0								0	0	0	0.17378	1	2550	2550		54.776	17.617	1				3919	2334	2234	2248	3990	3990					0.022637828340066335
ATAVHLKLV	9	Unmodified	_ATAVHLKLV_					0	0	0		ENSG00000114737|ENST00000348721|CISH;nc|ENSG00000114737|Q9NSE2-2|CISH;nc|ENSG00000114737|Q9NSE2-3|CISH;ENST00000491847.1_1_3:50645040-50646098:-|nuORF	ENSG00000114737|ENST00000348721|CISH	ENSG00000114737|ENST00000348721|CISH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	317.8705139160156	3	317.871044	950.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.979	1	12.979	12.479	13.479	0								0	0	0	0.35507	1	2509	2509		31.53	12.426	1				3920	2862	2235	2249	3991	3991					0.11402941065171035
ATAVYQAK	8	Unmodified	_ATAVYQAK_					0	0	0		nc|ENSG00000136146|Q9NPJ6-2|MED4;ENSG00000136146|ENST00000258648|MED4	nc|ENSG00000136146|Q9NPJ6-2|MED4	nc|ENSG00000136146|Q9NPJ6-2|MED4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.234619140625	2	426.23471	850.454868	-0.42367	-0.00018058	-0.26487	-0.0001129	-0.68853	-0.00029348	426.2346505262151	20.987	0.16505	20.987	20.88	21.045	0					6	3	2	0	0	0	0.43813	1	6879	6879		66.429	2.222	1	280950			3921	4055	2236	2250	3992	3992					0.023658268346594014
ATAVYQAK	8	Unmodified	_ATAVYQAK_					0	0	0		nc|ENSG00000136146|Q9NPJ6-2|MED4;ENSG00000136146|ENST00000258648|MED4	nc|ENSG00000136146|Q9NPJ6-2|MED4	nc|ENSG00000136146|Q9NPJ6-2|MED4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.23455810546875	2	426.23471	850.454868	0.15971	6.8074E-05	0.10662	4.5444E-05	0.26633	0.00011352	426.2346683414047	20.8	0.10787	20.8	20.751	20.859	0					4	2	2	0	0	0	0.59773	1	5932	5932		49.442	12.282	1	33473			3922	4055	2236	2250	3993	3993					0.023658268346594014
ATAVYQAK	8	Unmodified	_ATAVYQAK_					0	0	0		nc|ENSG00000136146|Q9NPJ6-2|MED4;ENSG00000136146|ENST00000258648|MED4	nc|ENSG00000136146|Q9NPJ6-2|MED4	nc|ENSG00000136146|Q9NPJ6-2|MED4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.2345275878906	2	426.23471	850.454868	-0.39172	-0.00016696	-0.13781	-5.874E-05	-0.52953	-0.0002257	426.23476262427175	20.951	0.21533	20.951	20.844	21.059	0					8	4	3	0	0	0	0.30437	1	6755	6755		82.305	21.333	1	471980			3923	4055	2236	2250	3994	3994					0.023658268346594014
ATAWAGVLAKG	11	Unmodified	_ATAWAGVLAKG_					0	0	0			REV__PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	REV__PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.19903564453125	3	348.86607	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.328	1	15.328	14.828	15.828	0								0	0	0	0.41918	1	3934	3934		35.178	9.2865	1		+		3924	21407	2237	2251	3995	3995					0.05633449197171103
ATAWRPCL	8	Unmodified	_ATAWRPCL_					0	0	0			REV__ENST00000361740.8_1_22:43015298-43015643:-|nuORF	REV__ENST00000361740.8_1_22:43015298-43015643:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2378234863281	2	459.23673	916.458907	2.5189	0.0011568	-0.2228	-0.00010232	2.2961	0.0010544	459.23655485248355	30.937	0.31257	30.937	30.797	31.11	0					10	6	2	0	0	0	0.49887	1	11507	11507		60.294	60.294	1	883040	+		3925	18573	2238	2252	3996	3996					-0.0026640694327397796
ATCCRPCRQ	9	Unmodified	_ATCCRPCRQ_					0	0	0			REV__ENST00000530275.2_1_1:39878414-39878576:+|nuORF	REV__ENST00000530275.2_1_1:39878414-39878576:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2244262695312	2	519.225513	1036.43647	-0.2991	-0.0001553	-1.4698	-0.00076314	-1.7689	-0.00091844	519.2245422079435	17.342	0.3005	17.342	17.183	17.483	0					15	6	5	0	0	0	0.41113	1	5145	5145		40.778	11.629	1	1099500	+		3926	20045	2239	2253	3997	3997					-0.08028697674853902
ATCDFPLLNR	10	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))DFPLLNR_	ATC(1)DFPLLNR		ATC(64)DFPLLNR		0	1	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	603.7980346679688	2	603.800423	1205.58629	0.69793	0.00042141	-3.7749	-0.0022793	-3.077	-0.0018579	603.7981204100539	42.591	0.47802	42.591	42.381	42.859	0					30	23	2	0	0	0	0.3337	2	16715	16650;16715		63.534	12.258	1	58558			3927	2269	2240	2254	3998;3999	3999	92				-0.008277308597598676
ATCDFPLLNR	10	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))DFPLLNR_	ATC(1)DFPLLNR		ATC(53)DFPLLNR		0	1	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.3015747070312	2	603.800423	1205.58629	3.04	0.0018356	-2.4858	-0.0015009	0.55423	0.00033464	603.7988753554525	42.466	0.46133	42.466	42.011	42.473	0					20	12	2	0	0	0	0.43008	1	16930	16930		52.937	20.124	1	119400			3928	2269	2240	2254	4000	4000	92				-0.008277308597598676
ATCDHPYIVK	10	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))DHPYIVK_	ATC(1)DHPYIVK		ATC(60)DHPYIVK		0	1	0		ENSG00000072786|ENST00000176763|STK10;STK10|p.T526Pfs*15|3|0.11|ENSG00000072786|chr5:172090341-172090341|T/-|frameshift_variant;ENST00000519710.1_1_5:171533786-171583726:-|nuORF	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.8658752441406	3	401.865741	1202.57539	0.94548	0.00037996	-0.90554	-0.00036391	0.03994	1.6051E-05	401.86546388192994	22.476	0.39963	22.476	22.34	22.739	0					14	9	2	0	0	0	0.36647	1	7320	7320		59.931	22.423	1	881790			3929	1501	2241	2255	4001	4001	59				-0.017791332340493682
ATCDHPYIVK	10	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))DHPYIVK_	ATC(1)DHPYIVK		ATC(67)DHPYIVK		0	1	0		ENSG00000072786|ENST00000176763|STK10;STK10|p.T526Pfs*15|3|0.11|ENSG00000072786|chr5:172090341-172090341|T/-|frameshift_variant;ENST00000519710.1_1_5:171533786-171583726:-|nuORF	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.86566162109375	3	401.865741	1202.57539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.369	1	22.369	21.869	22.869	0								0	0	0	0.17743	1	7430	7430		66.962	17.496	1				3930	1501	2241	2255	4002	4002	59				-0.017791332340493682
ATCELPLAK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))ELPLAK_	ATC(1)ELPLAK		ATC(120)ELPLAK		0	1	0		ENSG00000148450|ENST00000376510|MSRB2	ENSG00000148450|ENST00000376510|MSRB2	ENSG00000148450|ENST00000376510|MSRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7677917480469	2	501.76806	1001.52157	0.039595	1.9868E-05	-0.48895	-0.00024534	-0.44935	-0.00022547	501.76793700021375	29.482	0.47228	29.482	29.211	29.683	0					16	10	2	0	0	0	0.021961	2	10932	10890;10932		118.74	49.956	1	198900			3931	4832	2242	2256	4003;4004	4004	201				0.0208669433425257
ATCFDAAQ	8	Unmodified	_ATCFDAAQ_					0	0	0		RGS16|p.T148I|1|0.44|ENSG00000143333|chr1:182600458-182600458|G/A|missense_variant;ENSG00000143333|ENST00000367558|RGS16	RGS16|p.T148I|1|0.44|ENSG00000143333|chr1:182600458-182600458|G/A|missense_variant	RGS16|p.T148I|1|0.44|ENSG00000143333|chr1:182600458-182600458|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.6750793457031	2	413.673628	825.332703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.017	1	16.017	15.517	16.517	0								0	0	0	1.7419	1	4496	4496		44.117	7.0883	1				3932	4538	2243	2257	4005	4005					-0.08694958239220796
ATCFVWGK	8	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))FVWGK_	ATC(1)FVWGK		ATC(74)FVWGK		0	1	0			REV__BNC1|p.R356W|1|0.36|ENSG00000169594|chr15:83264185-83264185|G/A|missense_variant	REV__BNC1|p.R356W|1|0.36|ENSG00000169594|chr15:83264185-83264185|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.73931884765625	2	484.736563	967.458573	3.4886	0.001691	2.7403	0.0013283	6.2288	0.0030193	484.7379383436308	17.419	0.14363	17.419	17.343	17.487	0					11	5	3	0	0	0	0.37378	1	4370	4370		73.975	11.867	1	185380	+		3933	12291	2244	2258	4006	4006	483				-0.026458266631152583
ATCGMGMKK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))GMGMKK_	ATC(1)GMGMKK		ATC(62)GMGMKK		0	1	0		ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2267761230469	2	492.22719	982.439828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.635	1	15.635	15.135	16.135	0								0	0	0	0.14033	1	3437	3437		62.107	12.666	1				3934	8058	2245	2259	4007	4007	350				-0.05209447620836727
ATCGMGMKK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))GMGMKK_	ATC(1)GMGMKK		ATC(70)GMGMKK		0	1	0		ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2269287109375	2	492.22719	982.439828	-0.55152	-0.00027147	-0.097155	-4.7822E-05	-0.64868	-0.0003193	492.22714562556683	15.934	0.092519	15.934	15.886	15.979	0					4	2	2	0	0	0	0.1424	1	4224	4224		69.628	23.655	1	545870			3935	8058	2245	2259	4008	4008	350				-0.05209447620836727
ATCGMGMKK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))GMGMKK_	ATC(1)GMGMKK		ATC(64)GMGMKK		0	1	0		ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2270812988281	2	492.22719	982.439828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.924	1	15.924	15.424	16.424	0								0	0	0	0.13137	1	4451	4451		64.207	16.55	1				3936	8058	2245	2259	4009	4009	350				-0.05209447620836727
ATCLPLSVR	9	Unmodified	_ATCLPLSVR_					0	0	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant;ASPM|p.K671Nfs*3|1|0.21|ENSG00000066279|chr1:197139780-197139780|T/-|frameshift_variant;ASPM|p.L397*|1|0.27|ENSG00000066279|chr1:197143062-197143062|A/-|frameshift_variant;ASPM|p.S605Lfs*16|1|0.24|ENSG00000066279|chr1:197142439-197142439|A/-|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2703552246094	2	480.27077	958.526987	0.49736	0.00023887	1.8645	0.00089546	2.3618	0.0011343	480.27064236880074	36.3	0.43985	36.3	36.134	36.573	0					21	12	2	0	0	0	0.22837	1	13665	13665		58.23	15.834	1	190430			3937	1390;243	2246	2260	4010	4010					0.04606417916727423
ATCPQPWRY	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))PQPWRY_	ATC(1)PQPWRY		ATC(57)PQPWRY		0	1	0		ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant;ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.7740478515625	2	589.774208	1177.53386	0.12228	7.2118E-05	0.19692	0.00011614	0.3192	0.00018826	589.7741484645983	33.39	0.25534	33.39	33.307	33.562	0					13	8	2	0	0	0	0.24095	1	10853	10853		56.721	17.468	1	56308			3938	915	2247	2261	4011	4011	28				-0.04780269202706222
ATCPQPWRY	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))PQPWRY_	ATC(1)PQPWRY		ATC(72)PQPWRY		0	1	0		ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant;ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.7750244140625	2	589.774208	1177.53386	0.1951	0.00011506	0.018246	1.0761E-05	0.21334	0.00012582	589.7744448595715	33.657	0.47602	33.657	33.368	33.844	0					25	12	3	0	0	0	0.13267	1	12456	12456		71.877	30.797	1	460740			3939	915	2247	2261	4012	4012	28				-0.04780269202706222
ATCSFSGEK	9	Unmodified	_ATCSFSGEK_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2049865722656	2	465.205292	928.396032	-0.52687	-0.0002451	-0.37908	-0.00017635	-0.90595	-0.00042145	465.20524223947734	23.386	0.27497	23.386	23.251	23.526	0					17	6	4	0	0	0	0.24334	1	7141	7141		56.434	4.906	1	927840			3940	6704	2248	2262	4013	4013					-0.07103017521967558
ATCSRMLR	8	Carbamidomethyl (C),Oxidation (M)	_ATC(Carbamidomethyl (C))SRM(Oxidation (M))LR_	ATC(1)SRMLR	ATCSRM(1)LR	ATC(66)SRMLR	ATCSRM(66)LR	0	1	1			REV__NDRG1|p.R327C|1|0.38|ENSG00000104419|chr8:133239084-133239084|G/A|missense_variant	REV__NDRG1|p.R327C|1|0.38|ENSG00000104419|chr8:133239084-133239084|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.74853515625	2	505.747136	1009.47972	2.9356	0.0014847	-0.39862	-0.0002016	2.537	0.0012831	505.747010067561	22.914	0.51397	22.914	22.855	23.369	0					20	10	4	0	0	0	0.43813	1	7704	7704		66.429	20.477	1	841140	+		3941	21279	2249	2263	4014	4014	734	766			-0.02464184625910093
ATCSRVLNK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))SRVLNK_	ATC(1)SRVLNK		ATC(99)SRVLNK		0	1	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7822265625	2	524.782033	1047.54951	0.094331	4.9503E-05	-0.05347	-2.806E-05	0.040861	2.1443E-05	524.782158278365	16.399	0.2316	16.399	16.303	16.534	0					9	5	3	0	0	0	0.04067	1	4445	4445		98.582	32.153	1	2615100			3942	6628	2250	2264	4015	4015	282				0.02764017314348166
ATCSRVLNK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))SRVLNK_	ATC(1)SRVLNK		ATC(43)SRVLNK		0	1	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.1904296875	3	350.190447	1047.54951	0.32998	0.00011555	-0.75098	-0.00026299	-0.42101	-0.00014743	350.1902854560313	16.339	0.11591	16.339	16.28	16.396	0					4	2	2	0	0	0	0.38666	1	4664	4664		42.864	12.547	1	105200			3943	6628	2250	2264	4016	4016	282				0.02764017314348166
ATCSRVLNK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))SRVLNK_	ATC(1)SRVLNK		ATC(88)SRVLNK		0	1	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7824096679688	2	524.782033	1047.54951	-1.2554	-0.00065881	1.571	0.00082445	0.31564	0.00016564	524.7830514193954	16.153	0.10202	16.153	16.093	16.195	0					8	3	3	0	0	0	0.070005	1	3771	3771		88.177	26.07	1	202880			3944	6628	2250	2264	4017	4017	282				0.02764017314348166
ATCSRVLNK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))SRVLNK_	ATC(1)SRVLNK		ATC(46)SRVLNK		0	1	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.1903381347656	3	350.190447	1047.54951	-0.044413	-1.5553E-05	-0.23263	-8.1464E-05	-0.27704	-9.7017E-05	350.19034371070205	16.359	0.16714	16.359	16.251	16.418	0					5	3	2	0	0	0	0.35021	1	4524	4524		45.972	11.8	1	946850			3945	6628	2250	2264	4018	4018	282				0.02764017314348166
ATCSRVLNK	9	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))SRVLNK_	ATC(1)SRVLNK		ATC(55)SRVLNK		0	1	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7822265625	2	524.782033	1047.54951	3.4376	0.001804	-3.6236	-0.0019016	-0.18601	-9.7614E-05	524.7804898992422	16.375	0.21564	16.375	16.267	16.483	0					8	4	3	0	0	0	0.25761	1	4533	4533		54.722	7.065	1	1294000			3946	6628	2250	2264	4019	4019	282				0.02764017314348166
ATCSTLDLRRA	11	Unmodified	_ATCSTLDLRRA_					0	0	0			REV__KBTBD6|p.N172S|1|0.14|ENSG00000165572|chr13:41131997-41131997|T/C|missense_variant	REV__KBTBD6|p.N172S|1|0.14|ENSG00000165572|chr13:41131997-41131997|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	403.21435546875	3	402.880162	1205.61866	-0.12092	-4.8717E-05	1.1863	0.00047794	1.0654	0.00042922	402.8806045025384	28.82	0.13969	28.82	28.71	28.85	0					5	3	2	0	0	0	0.60833	1	9622	9622		36.318	6.7669	1	30315	+		3947	20774	2251	2265	4020	4020					0.024070565432566582
ATDAAGPGR	9	Unmodified	_ATDAAGPGR_					0	0	0		ENST00000585892.5_2_19:10828777-10828861:+|nuORF	ENST00000585892.5_2_19:10828777-10828861:+|nuORF	ENST00000585892.5_2_19:10828777-10828861:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.20416259765625	2	408.203941	814.39333	0.050519	2.0622E-05	0.47124	0.00019236	0.52175	0.00021298	408.2040054038913	13.566	0.14945	13.566	13.476	13.625	0					6	3	2	0	0	0	0.034359	1	3322	3322		104.75	22.506	1	123220			3948	10899	2252	2266	4021	4021					-0.02129104864616238
ATDASSNRVK	10	Unmodified	_ATDASSNRVK_					0	0	0		ENST00000291547.9_1_21:44394763-44427647:+|nuORF	ENST00000291547.9_1_21:44394763-44427647:+|nuORF	ENST00000291547.9_1_21:44394763-44427647:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.77294921875	2	524.772719	1047.53089	0.10824	5.6799E-05	0.28085	0.00014738	0.38908	0.00020418	524.7728830078079	12.584	0.13092	12.584	12.499	12.63	0					6	3	2	0	0	0	0.14151	1	2876	2876		88.177	24.643	1	620520			3949	8436	2253	2267	4022	4022					0.009021789441476358
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7981262207031	2	493.797675	985.580796	-0.082342	-4.0661E-05	1.0139	0.00050065	0.93154	0.00045999	493.7981212386624	35.366	0.20551	35.366	35.28	35.485	0					20	10	3	0	0	0	0.0084313	1	11587	11587		150.36	51.732	1	311600			3950	3806	2254	2268	4023	4023					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7971496582031	2	493.797675	985.580796	-1.27	-0.00062714	-0.64285	-0.00031744	-1.9129	-0.00094458	493.79775093112744	35.438	0.23103	35.438	35.332	35.563	0					28	11	3	0	0	0	0.030421	1	11977	11977		117.81	44.932	1	339950			3951	3806	2254	2268	4024	4024					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7975769042969	2	493.797675	985.580796	0.64795	0.00031996	-2.3515	-0.0011611	-1.7035	-0.00084118	493.79694810556765	35.643	0.26384	35.643	35.532	35.796	0					26	7	4	0	0	0	0.0090663	1	13815	13815		146.79	59.031	1	2453700			3952	3806	2254	2268	4025	4025					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.79815673828125	2	493.797675	985.580796	0.26181	0.00012928	0.53152	0.00026246	0.79333	0.00039175	493.7980634457413	35.426	0.15564	35.426	35.332	35.488	0					10	5	3	0	0	0	0.030421	1	12616	12616		117.81	40.493	1	117160			3953	3806	2254	2268	4026	4026					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7979736328125	2	493.797675	985.580796	0.028415	1.4031E-05	0.26379	0.00013026	0.29221	0.00014429	493.79788911265473	35.422	0.22716	35.422	35.326	35.553	0					19	8	3	0	0	0	0.15477	1	12608	12608		85.862	17.075	1	381680			3954	3806	2254	2268	4027	4027					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7978210449219	2	493.797675	985.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.392	1	35.392	34.892	35.892	0								0	0	0	0.22047	1	12605	12605		61.691	3.4614	1				3955	3806	2254	2268	4028	4028					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.79736328125	2	493.797675	985.580796	-0.6245	-0.00030837	0.15245	7.528E-05	-0.47204	-0.00023309	493.7976780977788	35.545	0.31704	35.545	35.484	35.801	0					17	6	4	0	0	0	0.01215	1	13739	13739		134.77	41.622	1	977020			3956	3806	2254	2268	4029	4029					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.79718017578125	2	493.797675	985.580796	0.88709	0.00043804	-2.4001	-0.0011852	-1.513	-0.00074714	493.79664595244736	35.577	0.31774	35.577	35.466	35.784	0					22	6	5	0	0	0	0.0068485	1	13733	13733		159.28	63.242	1	3564300			3957	3806	2254	2268	4030	4030					0.08742913620096715
ATDDSKAVCR	10	Carbamidomethyl (C)	_ATDDSKAVC(Carbamidomethyl (C))R_	ATDDSKAVC(1)R		ATDDSKAVC(55)R		0	1	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.76416015625	2	561.764037	1121.51352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.097	1	14.097	13.597	14.597	0								0	0	0	0.27575	1	2851	2851		54.722	35.619	1				3958	2934	2255	2269	4031	4031	112				-0.04237484653185675
ATDDSKAVCR	10	Carbamidomethyl (C)	_ATDDSKAVC(Carbamidomethyl (C))R_	ATDDSKAVC(1)R		ATDDSKAVC(150)R		0	1	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.7645874023438	2	561.764037	1121.51352	0.47072	0.00026443	0.12263	6.889E-05	0.59335	0.00033332	561.7643495187731	14.374	0.12821	14.374	14.327	14.456	0					9	3	3	0	0	0	0.0087281	1	3496	3496		148.69	75.811	1	623910			3959	2934	2255	2269	4032	4032	112				-0.04237484653185675
ATDDSKAVCR	10	Carbamidomethyl (C)	_ATDDSKAVC(Carbamidomethyl (C))R_	ATDDSKAVC(1)R		ATDDSKAVC(69)R		0	1	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7653198242188	2	561.764037	1121.51352	-0.41384	-0.00023248	1.3713	0.00077035	0.95747	0.00053787	561.7649248661259	14.08	0.082201	14.08	14.038	14.121	0					7	4	2	0	0	0	0.28675	1	2993	2993		68.846	34.674	1	121750			3960	2934	2255	2269	4033	4033	112				-0.04237484653185675
ATDDSKAVCR	10	Carbamidomethyl (C)	_ATDDSKAVC(Carbamidomethyl (C))R_	ATDDSKAVC(1)R		ATDDSKAVC(140)R		0	1	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7642822265625	2	561.764037	1121.51352	0.018283	1.0271E-05	0.13624	7.6536E-05	0.15453	8.6807E-05	561.7643693830335	14.358	0.15561	14.358	14.251	14.406	0					11	3	4	0	0	0	0.010125	1	3694	3694		142.36	73.574	1	682980			3961	2934	2255	2269	4034	4034	112				-0.04237484653185675
ATDDSKAVCR	10	Unmodified	_ATDDSKAVCR_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2535400390625	2	533.253305	1064.49206	0.13871	7.3966E-05	-0.2024	-0.00010793	-0.063693	-3.3965E-05	533.2533692909984	15.061	0.1903	15.061	15.01	15.201	0					11	4	4	0	0	0	0.057264	1	3821	3821		106.88	46.762	1	859330			3962	2934	2255	2270	4035	4035					-0.03760869681877921
ATDDSKAVCR	10	Unmodified	_ATDDSKAVCR_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2546997070312	2	533.253305	1064.49206	-0.41214	-0.00021978	2.1306	0.0011361	1.7184	0.00091635	533.2546072698923	14.823	0.083716	14.823	14.778	14.862	0					8	3	3	0	0	0	0.30252	1	3269	3269		66.962	26.184	1	101680			3963	2934	2255	2270	4036	4036					-0.03760869681877921
ATDDSKAVCR	10	Unmodified	_ATDDSKAVCR_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2536010742188	2	533.253305	1064.49206	1.7359	0.00092568	-1.4565	-0.00077669	0.27939	0.00014899	533.2526602096997	15.036	0.26549	15.036	14.977	15.242	0					10	5	3	0	0	0	0.048505	1	4040	4040		109.83	48.138	1	1664700			3964	2934	2255	2270	4037	4037					-0.03760869681877921
ATDDSKAVCR	10	Unmodified	_ATDDSKAVCR_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2536010742188	2	533.253305	1064.49206	1.7841	0.00095138	-1.3837	-0.00073784	0.40045	0.00021354	533.2527888540995	15.004	0.31869	15.004	14.945	15.263	0					12	6	4	0	0	0	0.034592	1	3874	3874		114.86	52.751	1	682810			3965	2934	2255	2270	4038	4038					-0.03760869681877921
ATDDVLADALT	11	Unmodified	_ATDDVLADALT_					0	0	0			REV__tr|U7SKJ2|U7SKJ2_FUSNUTraTcomplementresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02049PE=4SV=1	REV__tr|U7SKJ2|U7SKJ2_FUSNUTraTcomplementresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02049PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8524475097656	3	368.852154	1103.53463	0.76592	0.00028251	0.23695	8.7401E-05	1.0029	0.00036991	368.8521834319964	16.2	0.22661	16.2	16.149	16.375	0					11	5	3	0	0	0	0.56817	1	4352	4352		48.602	13.423	1	418590	+		3966	21754	2256	2271	4039	4039					-0.012991960726594698
ATDDYFRHK	9	Unmodified	_ATDDYFRHK_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ATP8B4|p.K126Nfs*3|1|0.07|ENSG00000104043|chr15:50010902-50010902|T/-|frameshift_variant;ENST00000558959.5_1_15:50271874-50336868:-|nuORF;ATP8B4|p.F281Lfs*4|1|0.41|ENSG00000104043|chr15:49979808-49979808|A/-|frameshift_variant;nc|ENSG00000143515|P98198-4|ATP8B2;ENST00000426445.1_1_1:154301436-154313374:+|nuORF;nc|ENSG00000143515|P98198-2|ATP8B2;ATP8B2|p.K587Efs*10|1|0.31|ENSG00000143515|chr1:154343465-154343466|-/G|frameshift_variant;ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2	ENSG00000104043|ENST00000284509|ATP8B4;ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.8525085449219	3	384.8526	1151.53597	-0.5976	-0.00022999	0.49594	0.00019086	-0.10166	-3.9123E-05	384.85270675172836	20.251	0.26756	20.251	20.143	20.41	0					9	5	3	0	0	0	0.42902	1	6415	6415		39.253	9.7021	1	678060			3967	4563;2263	2257	2272	4040	4040					-0.03373517193267617
ATDDYHYEK	9	Unmodified	_ATDDYHYEK_					0	0	0		ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.2423706054688	2	571.24346	1140.47237	1.1056	0.00063155	-2.1251	-0.0012139	-1.0195	-0.00058238	571.2428511567933	18.214	0.13126	18.214	18.154	18.286	0					9	5	3	0	0	0	0.40353	1	4492	4492		41.427	12.277	1	102200			3968	4111	2258	2273	4041	4041					-0.09224922421026349
ATDDYHYEK	9	Unmodified	_ATDDYHYEK_					0	0	0		ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.244140625	2	571.24346	1140.47237	-0.023506	-1.3427E-05	0.33337	0.00019044	0.30986	0.00017701	571.2438485177167	18.509	0.22553	18.509	18.416	18.641	0					7	5	2	0	0	0	0.02953	1	5440	5440		109.48	59.942	1	709200			3969	4111	2258	2273	4042	4042					-0.09224922421026349
ATDDYHYEK	9	Unmodified	_ATDDYHYEK_					0	0	0		ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.244140625	2	571.24346	1140.47237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.241	1	18.241	17.741	18.741	0								0	0	0	0.28666	1	4731	4731		37.812	9.9293	1				3970	4111	2258	2273	4043	4043					-0.09224922421026349
ATDDYHYEK	9	Unmodified	_ATDDYHYEK_					0	0	0		ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.2439575195312	2	571.24346	1140.47237	0.049653	2.8364E-05	0.8031	0.00045877	0.85275	0.00048713	571.2439933255725	18.434	0.11602	18.434	18.377	18.493	0					4	2	2	0	0	0	0.30841	1	5670	5670		49.536	20.366	1	343890			3971	4111	2258	2273	4044	4044					-0.09224922421026349
ATDELSSALAK	11	Unmodified	_ATDELSSALAK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.2907104492188	2	553.290411	1104.56627	1.8209	0.0010075	0.46747	0.00025865	2.2884	0.0012662	553.2899431275102	31.294	0.45705	31.294	31.211	31.668	0					17	11	3	0	0	0	0.019657	1	11387	11387		120.27	43.498	1	245320			3972	1514	2259	2274	4045	4045					0.018167966812825398
ATDELSSALAK	11	Unmodified	_ATDELSSALAK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.290771484375	2	553.290411	1104.56627	0.20649	0.00011425	0.5618	0.00031084	0.7683	0.00042509	553.2906635725225	31.071	0.16752	31.071	31.034	31.201	0					8	6	2	0	0	0	0.15663	1	10279	10279		79.489	23.055	1	71374			3973	1514	2259	2274	4046	4046					0.018167966812825398
ATDELSSALAK	11	Unmodified	_ATDELSSALAK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.290283203125	2	553.290411	1104.56627	1.608	0.00088971	-0.9821	-0.00054339	0.62593	0.00034632	553.2895117811623	31.302	0.35628	31.302	31.216	31.572	0					15	8	3	0	0	0	7.4289E-05	1	11796	11796		147.73	60.036	1	459640			3974	1514	2259	2274	4047	4047					0.018167966812825398
ATDELSSALAK	11	Unmodified	_ATDELSSALAK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2903442382812	2	553.290411	1104.56627	1.8187	0.0010063	-0.99575	-0.00055094	0.82293	0.00045532	553.2893399507507	31.267	0.50939	31.267	31.157	31.667	0					12	10	2	0	0	0	7.4289E-05	1	11683	11683		147.73	64.982	1	385380			3975	1514	2259	2274	4048	4048					0.018167966812825398
ATDGMAVRK	9	Unmodified	_ATDGMAVRK_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.75006103515625	2	474.750201	947.48585	-0.53838	-0.00025559	1.087	0.00051606	0.54863	0.00026046	474.7504640710905	16.154	0.16671	16.154	16.097	16.263	0					5	3	2	0	0	0	0.27249	1	4576	4576		52.937	6.9847	1	147820			3976	4100	2260	2275	4049	4049					0.010006568772496394
ATDGPLRNL	9	Unmodified	_ATDGPLRNL_					0	0	0			REV__ENST00000585822.1_1_18:37421397-37421817:-|nuORF	REV__ENST00000585822.1_1_18:37421397-37421817:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7613525390625	2	478.761623	955.508694	-0.31883	-0.00015264	-0.26637	-0.00012753	-0.5852	-0.00028017	478.76149593908804	28.899	0.67105	28.899	28.639	29.31	0					46	17	4	0	0	0	0.14603	1	9735	9735		68.787	4.5796	1	1662300	+		3977	20476	2261	2276	4050	4050					0.029159992663721823
ATDGSFANK	9	Unmodified	_ATDGSFANK_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.71661376953125	2	455.716882	909.41921	0.72131	0.00032871	-1.5065	-0.00068653	-0.78517	-0.00035782	455.7161578341756	17.845	0.22003	17.845	17.735	17.955	0					7	4	2	0	0	0	0.17854	1	5387	5387		64.207	3.2353	1	359800			3978	6701	2262	2277	4051	4051					-0.039122554130017306
ATDGTFSSK	9	Unmodified	_ATDGTFSSK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2165222167969	2	457.216714	912.418876	0.044074	2.0151E-05	-0.48679	-0.00022257	-0.44272	-0.00020242	457.2163725624039	17.498	0.18515	17.498	17.417	17.602	0					8	6	2	0	0	0	0.36892	1	4180	4180		44.377	7.2181	1	85258			3979	1705	2263	2278	4052	4052					-0.0408367513284702
ATDGTFSSK	9	Unmodified	_ATDGTFSSK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2164001464844	2	457.216714	912.418876	0.76607	0.00035026	-1.1715	-0.00053564	-0.40545	-0.00018538	457.2160805369738	17.784	0.21352	17.784	17.696	17.91	0					12	5	3	0	0	0	0.0097668	1	5089	5089		141.52	62.069	1	637810			3980	1705	2263	2278	4053	4053					-0.0408367513284702
ATDGTFSSK	9	Unmodified	_ATDGTFSSK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.21746826171875	2	457.216714	912.418876	-1.0328	-0.0004722	2.4263	0.0011093	1.3935	0.00063713	457.21779495230845	17.521	0.16337	17.521	17.441	17.604	0					8	5	2	0	0	0	0.1424	1	4402	4402		69.628	21.97	1	79016			3981	1705	2263	2278	4054	4054					-0.0408367513284702
ATDGTFSSK	9	Unmodified	_ATDGTFSSK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.21661376953125	2	457.216714	912.418876	0.72177	0.00033	-1.1975	-0.00054752	-0.47574	-0.00021752	457.2161516304045	17.743	0.32099	17.743	17.583	17.904	0					11	6	3	0	0	0	0.0067848	1	5338	5338		150.36	73.587	1	914260			3982	1705	2263	2278	4055	4055					-0.0408367513284702
ATDGTFSSK	9	Unmodified	_ATDGTFSSK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2164306640625	2	457.216714	912.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.768	1	17.768	17.268	18.268	0								0	0	0	0.091069	1	5187	5187		74.255	5.7703	1				3983	1705	2263	2278	4056	4056					-0.0408367513284702
ATDIKHKKQT	10	Unmodified	_ATDIKHKKQT_					0	0	0			REV__sp|P09699|US26_HCMVAUncharacterizedproteinHHLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US26PE=3SV=1	REV__sp|P09699|US26_HCMVAUncharacterizedproteinHHLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US26PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	390.55987548828125	3	390.559417	1168.65642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.818	1	27.818	27.318	28.318	0								0	0	0	0.4146	1	8908	8908		26.063	6.0329	1		+		3984	21552	2264	2279	4057	4057					0.07883890800349036
ATDIPSSQK	9	Unmodified	_ATDIPSSQK_					0	0	0		ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-3|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1487Yfs*18|1|0.1|ENSG00000134982|chr5:112840051-112840057|ATACTTT/-|frameshift_variant;APC|p.F1491Lfs*16|1|0.27|ENSG00000134982|chr5:112840064-112840064|T/-|frameshift_variant;APC|p.E1494Kfs*13|1|0.84|ENSG00000134982|chr5:112840073-112840073|G/-|frameshift_variant;APC|p.T1493Rfs*14|2|0.34|ENSG00000134982|chr5:112840069-112840069|C/-|frameshift_variant;APC|p.A1492Pfs*15|1|0.69|ENSG00000134982|chr5:112840068-112840068|G/-|frameshift_variant;APC|p.L1488Yfs*19|2|0.41|ENSG00000134982|chr5:112840055-112840055|T/-|frameshift_variant;APC|p.L1489Yfs*18|3|0.26|ENSG00000134982|chr5:112840059-112840059|T/-|frameshift_variant;APC|p.D1486Ifs*21|2|0.76|ENSG00000134982|chr5:112840049-112840049|T/-|frameshift_variant;APC|p.S1465Rfs*9|3|0.3|ENSG00000134982|chr5:112839978-112839979|-/AG|frameshift_variant;APC|p.L1488Ffs*17|1|0.27|ENSG00000134982|chr5:112840057-112840063|TATTACA/-|frameshift_variant;APC|p.H1490Yfs*18|1|0.48|ENSG00000134982|chr5:112840059-112840060|-/TA|frameshift_variant;APC|p.S1436Rfs*38|1|0.42|ENSG00000134982|chr5:112839899-112839900|-/AG|frameshift_variant;APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant;APC|p.Q1429Dfs*45|1|0.42|ENSG00000134982|chr5:112839875-112839876|-/GG|frameshift_variant;APC|p.N1455Ifs*18|1|0.15|ENSG00000134982|chr5:112839954-112839954|A/-|frameshift_variant;APC|p.P1439Lfs*34|4|0.34|ENSG00000134982|chr5:112839909-112839909|C/-|frameshift_variant;APC|p.S1421Mfs*52|1|0.67|ENSG00000134982|chr5:112839856-112839856|G/-|frameshift_variant;APC|p.L1489Kfs*19|1|0.34|ENSG00000134982|chr5:112840058-112840074|ATTACATTTTGCCACGG/-|frameshift_variant;APC|p.S1421Vfs*52|1|0.51|ENSG00000134982|chr5:112839855-112839855|A/-|frameshift_variant;APC|p.S1436Vfs*37|1|0.37|ENSG00000134982|chr5:112839899-112839899|A/-|frameshift_variant;APC|p.E1544Nfs*21|1|0.05|ENSG00000134982|chr5:112840220-112840220|T/-|frameshift_variant;APC|p.S1581Lfs*69|1|0.34|ENSG00000134982|chr5:112840333-112840333|T/-|frameshift_variant;APC|p.E1576Kfs*74|1|0.61|ENSG00000134982|chr5:112840319-112840319|A/-|frameshift_variant;APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant;APC|p.C1578Mfs*13|1|0.68|ENSG00000134982|chr5:112840323-112840324|-/A|frameshift_variant;APC|p.I1580Nfs*11|1|0.36|ENSG00000134982|chr5:112840331-112840332|-/A|frameshift_variant;APC|p.I1574Yfs*2|1|0.36|ENSG00000134982|chr5:112840312-112840312|A/-|frameshift_variant;APC|p.T1556Lfs*9|1|0.61|ENSG00000134982|chr5:112840255-112840255|A/-|frameshift_variant;APC|p.N1535Mfs*30|1|0.28|ENSG00000134982|chr5:112840194-112840194|G/-|frameshift_variant;APC|p.S1501Ffs*13|1|0.5|ENSG00000134982|chr5:112840091-112840092|-/T|frameshift_variant;APC|p.E1552Qfs*12|1|0.31|ENSG00000134982|chr5:112840247-112840250|AGAG/-|frameshift_variant;APC|p.N1531Rfs*31|1|0.18|ENSG00000134982|chr5:112840186-112840195|ATGACAATGG/-|frameshift_variant;APC|p.T1556Nfs*3|11|0.46|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.I1557*|1|0.43|ENSG00000134982|chr5:112840262-112840263|TA/-|frameshift_variant;APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant;APC|p.H1490Nfs*25|1|0.21|ENSG00000134982|chr5:112840059-112840060|-/TAAA|frameshift_variant;APC|p.A1492Cfs*22|2|0.29|ENSG00000134982|chr5:112840063-112840064|-/T|frameshift_variant;APC|p.H1490Tfs*24|1|0.23|ENSG00000134982|chr5:112840060-112840061|-/A|frameshift_variant;APC|p.C1249Sfs*16|1|0.59|ENSG00000134982|chr5:112839340-112839340|G/-|frameshift_variant;APC|p.S1400*|1|0.45|ENSG00000134982|chr5:112839793-112839793|C/-|frameshift_variant;APC|p.R1435Efs*38|1|0.41|ENSG00000134982|chr5:112839897-112839897|A/-|frameshift_variant;APC|p.M1383Ifs*3|1|0.64|ENSG00000134982|chr5:112839741-112839742|-/T|frameshift_variant;APC|p.A1351Gfs*3|1|0.81|ENSG00000134982|chr5:112839644-112839645|-/G|frameshift_variant;APC|p.P1330Qfs*11|1|0.22|ENSG00000134982|chr5:112839583-112839584|CT/-|frameshift_variant;APC|p.L1337Pfs*4|1|0.82|ENSG00000134982|chr5:112839604-112839605|TG/-|frameshift_variant;APC|p.E1322Rfs*10|1|0.15|ENSG00000134982|chr5:112839556-112839557|-/C|frameshift_variant;APC|p.P1319Lfs*3|1|0.27|ENSG00000134982|chr5:112839547-112839548|-/TC|frameshift_variant;APC|p.P1319Lfs*2|2|0.32|ENSG00000134982|chr5:112839549-112839549|C/-|frameshift_variant;APC|p.I1311Lfs*10|1|0.45|ENSG00000134982|chr5:112839524-112839524|G/-|frameshift_variant;APC|p.T1313Nfs*2|1|0.51|ENSG00000134982|chr5:112839529-112839530|-/A|frameshift_variant;APC|p.A1305Sfs*10|1|0.24|ENSG00000134982|chr5:112839504-112839505|-/T|frameshift_variant;APC|p.I1311Rfs*3|1|0.46|ENSG00000134982|chr5:112839526-112839527|TT/-|frameshift_variant;APC|p.I1307Rfs*6|1|0.12|ENSG00000134982|chr5:112839511-112839515|AAATA/-|frameshift_variant;APC|p.I1304Mfs*4|1|0.28|ENSG00000134982|chr5:112839506-112839506|A/-|frameshift_variant;APC|p.A1296Qfs*9|1|0.88|ENSG00000134982|chr5:112839478-112839478|A/-|frameshift_variant;APC|p.L1302Cfs*3|1|0.77|ENSG00000134982|chr5:112839496-112839496|C/-|frameshift_variant;APC|p.G1288*|1|0.58|ENSG00000134982|chr5:112839452-112839453|-/AT|frameshift_variant;APC|p.S1272Ffs*4|1|0.15|ENSG00000134982|chr5:112839403-112839404|-/T|frameshift_variant;APC|p.C1387*|1|0.31|ENSG00000134982|chr5:112839749-112839750|-/AGAT|frameshift_variant;APC|p.S1205Tfs*60|1|0.36|ENSG00000134982|chr5:112839208-112839208|G/-|frameshift_variant;APC|p.V1390Ffs*6|1|0.39|ENSG00000134982|chr5:112839757-112839758|-/TTCT|frameshift_variant;APC|p.V1414*|4|0.37|ENSG00000134982|chr5:112839833-112839833|G/-|frameshift_variant;APC|p.M1431Cfs*42|1|0.4|ENSG00000134982|chr5:112839883-112839883|C/-|frameshift_variant;APC|p.P1442Lfs*31|1|0.41|ENSG00000134982|chr5:112839918-112839918|C/-|frameshift_variant;APC|p.E1464Vfs*8|2|0.27|ENSG00000134982|chr5:112839979-112839982|AGAG/-|frameshift_variant;APC|p.Q1447Sfs*24|1|0.77|ENSG00000134982|chr5:112839931-112839937|CTCAAAC/-|frameshift_variant;APC|p.R1435Lfs*31|1|0.38|ENSG00000134982|chr5:112839896-112839917|CAGAAGTAAAACACCTCCACCA/-|frameshift_variant;APC|p.I1417Hfs*6|1|0.53|ENSG00000134982|chr5:112839839-112839840|-/G|frameshift_variant;APC|p.S1419*|1|0.33|ENSG00000134982|chr5:112839844-112839845|-/TA|frameshift_variant;APC|p.V1414Efs*5|1|0.58|ENSG00000134982|chr5:112839835-112839835|T/-|frameshift_variant;APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant;APC|p.S1403Mfs*13|1|0.05|ENSG00000134982|chr5:112839799-112839818|CCAGCTCCGTTCAGAGTGAA/-|frameshift_variant;APC|p.E1353Nfs*62|1|0.5|ENSG00000134982|chr5:112839649-112839649|T/-|frameshift_variant;APC|p.I1401Mfs*14|1|0.73|ENSG00000134982|chr5:112839796-112839796|T/-|frameshift_variant;APC|p.E1397Gfs*18|1|0.76|ENSG00000134982|chr5:112839784-112839784|A/-|frameshift_variant;APC|p.S1411Rfs*4|1|0.42|ENSG00000134982|chr5:112839827-112839827|T/-|frameshift_variant;APC|p.S1407Vfs*8|1|0.39|ENSG00000134982|chr5:112839812-112839812|G/-|frameshift_variant;APC|p.S1398Ifs*17|1|0.86|ENSG00000134982|chr5:112839787-112839787|G/-|frameshift_variant;APC|p.S1355Lfs*60|2|0.6|ENSG00000134982|chr5:112839654-112839654|T/-|frameshift_variant;APC|p.A1446Vfs*27|1|0.38|ENSG00000134982|chr5:112839931-112839931|C/-|frameshift_variant;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	ENSG00000134982|ENST00000257430|APC;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	ENSG00000134982|ENST00000257430|APC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.74560546875	2	473.745639	945.476725	-0.51008	-0.00024165	0.17411	8.2486E-05	-0.33596	-0.00015916	473.7456919848052	18.033	0.36811	18.033	17.926	18.294	0					19	8	3	0	0	0	0.035062	1	5205	5205		104.06	13.28	1	3917900			3985	3953;182	2265	2280	4058	4058					0.0018058679256682808
ATDIPSSQK	9	Unmodified	_ATDIPSSQK_					0	0	0		ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-3|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1487Yfs*18|1|0.1|ENSG00000134982|chr5:112840051-112840057|ATACTTT/-|frameshift_variant;APC|p.F1491Lfs*16|1|0.27|ENSG00000134982|chr5:112840064-112840064|T/-|frameshift_variant;APC|p.E1494Kfs*13|1|0.84|ENSG00000134982|chr5:112840073-112840073|G/-|frameshift_variant;APC|p.T1493Rfs*14|2|0.34|ENSG00000134982|chr5:112840069-112840069|C/-|frameshift_variant;APC|p.A1492Pfs*15|1|0.69|ENSG00000134982|chr5:112840068-112840068|G/-|frameshift_variant;APC|p.L1488Yfs*19|2|0.41|ENSG00000134982|chr5:112840055-112840055|T/-|frameshift_variant;APC|p.L1489Yfs*18|3|0.26|ENSG00000134982|chr5:112840059-112840059|T/-|frameshift_variant;APC|p.D1486Ifs*21|2|0.76|ENSG00000134982|chr5:112840049-112840049|T/-|frameshift_variant;APC|p.S1465Rfs*9|3|0.3|ENSG00000134982|chr5:112839978-112839979|-/AG|frameshift_variant;APC|p.L1488Ffs*17|1|0.27|ENSG00000134982|chr5:112840057-112840063|TATTACA/-|frameshift_variant;APC|p.H1490Yfs*18|1|0.48|ENSG00000134982|chr5:112840059-112840060|-/TA|frameshift_variant;APC|p.S1436Rfs*38|1|0.42|ENSG00000134982|chr5:112839899-112839900|-/AG|frameshift_variant;APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant;APC|p.Q1429Dfs*45|1|0.42|ENSG00000134982|chr5:112839875-112839876|-/GG|frameshift_variant;APC|p.N1455Ifs*18|1|0.15|ENSG00000134982|chr5:112839954-112839954|A/-|frameshift_variant;APC|p.P1439Lfs*34|4|0.34|ENSG00000134982|chr5:112839909-112839909|C/-|frameshift_variant;APC|p.S1421Mfs*52|1|0.67|ENSG00000134982|chr5:112839856-112839856|G/-|frameshift_variant;APC|p.L1489Kfs*19|1|0.34|ENSG00000134982|chr5:112840058-112840074|ATTACATTTTGCCACGG/-|frameshift_variant;APC|p.S1421Vfs*52|1|0.51|ENSG00000134982|chr5:112839855-112839855|A/-|frameshift_variant;APC|p.S1436Vfs*37|1|0.37|ENSG00000134982|chr5:112839899-112839899|A/-|frameshift_variant;APC|p.E1544Nfs*21|1|0.05|ENSG00000134982|chr5:112840220-112840220|T/-|frameshift_variant;APC|p.S1581Lfs*69|1|0.34|ENSG00000134982|chr5:112840333-112840333|T/-|frameshift_variant;APC|p.E1576Kfs*74|1|0.61|ENSG00000134982|chr5:112840319-112840319|A/-|frameshift_variant;APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant;APC|p.C1578Mfs*13|1|0.68|ENSG00000134982|chr5:112840323-112840324|-/A|frameshift_variant;APC|p.I1580Nfs*11|1|0.36|ENSG00000134982|chr5:112840331-112840332|-/A|frameshift_variant;APC|p.I1574Yfs*2|1|0.36|ENSG00000134982|chr5:112840312-112840312|A/-|frameshift_variant;APC|p.T1556Lfs*9|1|0.61|ENSG00000134982|chr5:112840255-112840255|A/-|frameshift_variant;APC|p.N1535Mfs*30|1|0.28|ENSG00000134982|chr5:112840194-112840194|G/-|frameshift_variant;APC|p.S1501Ffs*13|1|0.5|ENSG00000134982|chr5:112840091-112840092|-/T|frameshift_variant;APC|p.E1552Qfs*12|1|0.31|ENSG00000134982|chr5:112840247-112840250|AGAG/-|frameshift_variant;APC|p.N1531Rfs*31|1|0.18|ENSG00000134982|chr5:112840186-112840195|ATGACAATGG/-|frameshift_variant;APC|p.T1556Nfs*3|11|0.46|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.I1557*|1|0.43|ENSG00000134982|chr5:112840262-112840263|TA/-|frameshift_variant;APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant;APC|p.H1490Nfs*25|1|0.21|ENSG00000134982|chr5:112840059-112840060|-/TAAA|frameshift_variant;APC|p.A1492Cfs*22|2|0.29|ENSG00000134982|chr5:112840063-112840064|-/T|frameshift_variant;APC|p.H1490Tfs*24|1|0.23|ENSG00000134982|chr5:112840060-112840061|-/A|frameshift_variant;APC|p.C1249Sfs*16|1|0.59|ENSG00000134982|chr5:112839340-112839340|G/-|frameshift_variant;APC|p.S1400*|1|0.45|ENSG00000134982|chr5:112839793-112839793|C/-|frameshift_variant;APC|p.R1435Efs*38|1|0.41|ENSG00000134982|chr5:112839897-112839897|A/-|frameshift_variant;APC|p.M1383Ifs*3|1|0.64|ENSG00000134982|chr5:112839741-112839742|-/T|frameshift_variant;APC|p.A1351Gfs*3|1|0.81|ENSG00000134982|chr5:112839644-112839645|-/G|frameshift_variant;APC|p.P1330Qfs*11|1|0.22|ENSG00000134982|chr5:112839583-112839584|CT/-|frameshift_variant;APC|p.L1337Pfs*4|1|0.82|ENSG00000134982|chr5:112839604-112839605|TG/-|frameshift_variant;APC|p.E1322Rfs*10|1|0.15|ENSG00000134982|chr5:112839556-112839557|-/C|frameshift_variant;APC|p.P1319Lfs*3|1|0.27|ENSG00000134982|chr5:112839547-112839548|-/TC|frameshift_variant;APC|p.P1319Lfs*2|2|0.32|ENSG00000134982|chr5:112839549-112839549|C/-|frameshift_variant;APC|p.I1311Lfs*10|1|0.45|ENSG00000134982|chr5:112839524-112839524|G/-|frameshift_variant;APC|p.T1313Nfs*2|1|0.51|ENSG00000134982|chr5:112839529-112839530|-/A|frameshift_variant;APC|p.A1305Sfs*10|1|0.24|ENSG00000134982|chr5:112839504-112839505|-/T|frameshift_variant;APC|p.I1311Rfs*3|1|0.46|ENSG00000134982|chr5:112839526-112839527|TT/-|frameshift_variant;APC|p.I1307Rfs*6|1|0.12|ENSG00000134982|chr5:112839511-112839515|AAATA/-|frameshift_variant;APC|p.I1304Mfs*4|1|0.28|ENSG00000134982|chr5:112839506-112839506|A/-|frameshift_variant;APC|p.A1296Qfs*9|1|0.88|ENSG00000134982|chr5:112839478-112839478|A/-|frameshift_variant;APC|p.L1302Cfs*3|1|0.77|ENSG00000134982|chr5:112839496-112839496|C/-|frameshift_variant;APC|p.G1288*|1|0.58|ENSG00000134982|chr5:112839452-112839453|-/AT|frameshift_variant;APC|p.S1272Ffs*4|1|0.15|ENSG00000134982|chr5:112839403-112839404|-/T|frameshift_variant;APC|p.C1387*|1|0.31|ENSG00000134982|chr5:112839749-112839750|-/AGAT|frameshift_variant;APC|p.S1205Tfs*60|1|0.36|ENSG00000134982|chr5:112839208-112839208|G/-|frameshift_variant;APC|p.V1390Ffs*6|1|0.39|ENSG00000134982|chr5:112839757-112839758|-/TTCT|frameshift_variant;APC|p.V1414*|4|0.37|ENSG00000134982|chr5:112839833-112839833|G/-|frameshift_variant;APC|p.M1431Cfs*42|1|0.4|ENSG00000134982|chr5:112839883-112839883|C/-|frameshift_variant;APC|p.P1442Lfs*31|1|0.41|ENSG00000134982|chr5:112839918-112839918|C/-|frameshift_variant;APC|p.E1464Vfs*8|2|0.27|ENSG00000134982|chr5:112839979-112839982|AGAG/-|frameshift_variant;APC|p.Q1447Sfs*24|1|0.77|ENSG00000134982|chr5:112839931-112839937|CTCAAAC/-|frameshift_variant;APC|p.R1435Lfs*31|1|0.38|ENSG00000134982|chr5:112839896-112839917|CAGAAGTAAAACACCTCCACCA/-|frameshift_variant;APC|p.I1417Hfs*6|1|0.53|ENSG00000134982|chr5:112839839-112839840|-/G|frameshift_variant;APC|p.S1419*|1|0.33|ENSG00000134982|chr5:112839844-112839845|-/TA|frameshift_variant;APC|p.V1414Efs*5|1|0.58|ENSG00000134982|chr5:112839835-112839835|T/-|frameshift_variant;APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant;APC|p.S1403Mfs*13|1|0.05|ENSG00000134982|chr5:112839799-112839818|CCAGCTCCGTTCAGAGTGAA/-|frameshift_variant;APC|p.E1353Nfs*62|1|0.5|ENSG00000134982|chr5:112839649-112839649|T/-|frameshift_variant;APC|p.I1401Mfs*14|1|0.73|ENSG00000134982|chr5:112839796-112839796|T/-|frameshift_variant;APC|p.E1397Gfs*18|1|0.76|ENSG00000134982|chr5:112839784-112839784|A/-|frameshift_variant;APC|p.S1411Rfs*4|1|0.42|ENSG00000134982|chr5:112839827-112839827|T/-|frameshift_variant;APC|p.S1407Vfs*8|1|0.39|ENSG00000134982|chr5:112839812-112839812|G/-|frameshift_variant;APC|p.S1398Ifs*17|1|0.86|ENSG00000134982|chr5:112839787-112839787|G/-|frameshift_variant;APC|p.S1355Lfs*60|2|0.6|ENSG00000134982|chr5:112839654-112839654|T/-|frameshift_variant;APC|p.A1446Vfs*27|1|0.38|ENSG00000134982|chr5:112839931-112839931|C/-|frameshift_variant;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	ENSG00000134982|ENST00000257430|APC;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	ENSG00000134982|ENST00000257430|APC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.74505615234375	2	473.745639	945.476725	-1.5774	-0.00074731	0.71166	0.00033714	-0.86579	-0.00041017	473.74593166348086	17.766	0.22408	17.766	17.657	17.881	0					14	6	3	0	0	0	0.17854	1	4494	4494		64.207	12.872	1	955000			3986	3953;182	2265	2280	4059	4059					0.0018058679256682808
ATDIPSSQK	9	Unmodified	_ATDIPSSQK_					0	0	0		ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-3|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1487Yfs*18|1|0.1|ENSG00000134982|chr5:112840051-112840057|ATACTTT/-|frameshift_variant;APC|p.F1491Lfs*16|1|0.27|ENSG00000134982|chr5:112840064-112840064|T/-|frameshift_variant;APC|p.E1494Kfs*13|1|0.84|ENSG00000134982|chr5:112840073-112840073|G/-|frameshift_variant;APC|p.T1493Rfs*14|2|0.34|ENSG00000134982|chr5:112840069-112840069|C/-|frameshift_variant;APC|p.A1492Pfs*15|1|0.69|ENSG00000134982|chr5:112840068-112840068|G/-|frameshift_variant;APC|p.L1488Yfs*19|2|0.41|ENSG00000134982|chr5:112840055-112840055|T/-|frameshift_variant;APC|p.L1489Yfs*18|3|0.26|ENSG00000134982|chr5:112840059-112840059|T/-|frameshift_variant;APC|p.D1486Ifs*21|2|0.76|ENSG00000134982|chr5:112840049-112840049|T/-|frameshift_variant;APC|p.S1465Rfs*9|3|0.3|ENSG00000134982|chr5:112839978-112839979|-/AG|frameshift_variant;APC|p.L1488Ffs*17|1|0.27|ENSG00000134982|chr5:112840057-112840063|TATTACA/-|frameshift_variant;APC|p.H1490Yfs*18|1|0.48|ENSG00000134982|chr5:112840059-112840060|-/TA|frameshift_variant;APC|p.S1436Rfs*38|1|0.42|ENSG00000134982|chr5:112839899-112839900|-/AG|frameshift_variant;APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant;APC|p.Q1429Dfs*45|1|0.42|ENSG00000134982|chr5:112839875-112839876|-/GG|frameshift_variant;APC|p.N1455Ifs*18|1|0.15|ENSG00000134982|chr5:112839954-112839954|A/-|frameshift_variant;APC|p.P1439Lfs*34|4|0.34|ENSG00000134982|chr5:112839909-112839909|C/-|frameshift_variant;APC|p.S1421Mfs*52|1|0.67|ENSG00000134982|chr5:112839856-112839856|G/-|frameshift_variant;APC|p.L1489Kfs*19|1|0.34|ENSG00000134982|chr5:112840058-112840074|ATTACATTTTGCCACGG/-|frameshift_variant;APC|p.S1421Vfs*52|1|0.51|ENSG00000134982|chr5:112839855-112839855|A/-|frameshift_variant;APC|p.S1436Vfs*37|1|0.37|ENSG00000134982|chr5:112839899-112839899|A/-|frameshift_variant;APC|p.E1544Nfs*21|1|0.05|ENSG00000134982|chr5:112840220-112840220|T/-|frameshift_variant;APC|p.S1581Lfs*69|1|0.34|ENSG00000134982|chr5:112840333-112840333|T/-|frameshift_variant;APC|p.E1576Kfs*74|1|0.61|ENSG00000134982|chr5:112840319-112840319|A/-|frameshift_variant;APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant;APC|p.C1578Mfs*13|1|0.68|ENSG00000134982|chr5:112840323-112840324|-/A|frameshift_variant;APC|p.I1580Nfs*11|1|0.36|ENSG00000134982|chr5:112840331-112840332|-/A|frameshift_variant;APC|p.I1574Yfs*2|1|0.36|ENSG00000134982|chr5:112840312-112840312|A/-|frameshift_variant;APC|p.T1556Lfs*9|1|0.61|ENSG00000134982|chr5:112840255-112840255|A/-|frameshift_variant;APC|p.N1535Mfs*30|1|0.28|ENSG00000134982|chr5:112840194-112840194|G/-|frameshift_variant;APC|p.S1501Ffs*13|1|0.5|ENSG00000134982|chr5:112840091-112840092|-/T|frameshift_variant;APC|p.E1552Qfs*12|1|0.31|ENSG00000134982|chr5:112840247-112840250|AGAG/-|frameshift_variant;APC|p.N1531Rfs*31|1|0.18|ENSG00000134982|chr5:112840186-112840195|ATGACAATGG/-|frameshift_variant;APC|p.T1556Nfs*3|11|0.46|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.I1557*|1|0.43|ENSG00000134982|chr5:112840262-112840263|TA/-|frameshift_variant;APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant;APC|p.H1490Nfs*25|1|0.21|ENSG00000134982|chr5:112840059-112840060|-/TAAA|frameshift_variant;APC|p.A1492Cfs*22|2|0.29|ENSG00000134982|chr5:112840063-112840064|-/T|frameshift_variant;APC|p.H1490Tfs*24|1|0.23|ENSG00000134982|chr5:112840060-112840061|-/A|frameshift_variant;APC|p.C1249Sfs*16|1|0.59|ENSG00000134982|chr5:112839340-112839340|G/-|frameshift_variant;APC|p.S1400*|1|0.45|ENSG00000134982|chr5:112839793-112839793|C/-|frameshift_variant;APC|p.R1435Efs*38|1|0.41|ENSG00000134982|chr5:112839897-112839897|A/-|frameshift_variant;APC|p.M1383Ifs*3|1|0.64|ENSG00000134982|chr5:112839741-112839742|-/T|frameshift_variant;APC|p.A1351Gfs*3|1|0.81|ENSG00000134982|chr5:112839644-112839645|-/G|frameshift_variant;APC|p.P1330Qfs*11|1|0.22|ENSG00000134982|chr5:112839583-112839584|CT/-|frameshift_variant;APC|p.L1337Pfs*4|1|0.82|ENSG00000134982|chr5:112839604-112839605|TG/-|frameshift_variant;APC|p.E1322Rfs*10|1|0.15|ENSG00000134982|chr5:112839556-112839557|-/C|frameshift_variant;APC|p.P1319Lfs*3|1|0.27|ENSG00000134982|chr5:112839547-112839548|-/TC|frameshift_variant;APC|p.P1319Lfs*2|2|0.32|ENSG00000134982|chr5:112839549-112839549|C/-|frameshift_variant;APC|p.I1311Lfs*10|1|0.45|ENSG00000134982|chr5:112839524-112839524|G/-|frameshift_variant;APC|p.T1313Nfs*2|1|0.51|ENSG00000134982|chr5:112839529-112839530|-/A|frameshift_variant;APC|p.A1305Sfs*10|1|0.24|ENSG00000134982|chr5:112839504-112839505|-/T|frameshift_variant;APC|p.I1311Rfs*3|1|0.46|ENSG00000134982|chr5:112839526-112839527|TT/-|frameshift_variant;APC|p.I1307Rfs*6|1|0.12|ENSG00000134982|chr5:112839511-112839515|AAATA/-|frameshift_variant;APC|p.I1304Mfs*4|1|0.28|ENSG00000134982|chr5:112839506-112839506|A/-|frameshift_variant;APC|p.A1296Qfs*9|1|0.88|ENSG00000134982|chr5:112839478-112839478|A/-|frameshift_variant;APC|p.L1302Cfs*3|1|0.77|ENSG00000134982|chr5:112839496-112839496|C/-|frameshift_variant;APC|p.G1288*|1|0.58|ENSG00000134982|chr5:112839452-112839453|-/AT|frameshift_variant;APC|p.S1272Ffs*4|1|0.15|ENSG00000134982|chr5:112839403-112839404|-/T|frameshift_variant;APC|p.C1387*|1|0.31|ENSG00000134982|chr5:112839749-112839750|-/AGAT|frameshift_variant;APC|p.S1205Tfs*60|1|0.36|ENSG00000134982|chr5:112839208-112839208|G/-|frameshift_variant;APC|p.V1390Ffs*6|1|0.39|ENSG00000134982|chr5:112839757-112839758|-/TTCT|frameshift_variant;APC|p.V1414*|4|0.37|ENSG00000134982|chr5:112839833-112839833|G/-|frameshift_variant;APC|p.M1431Cfs*42|1|0.4|ENSG00000134982|chr5:112839883-112839883|C/-|frameshift_variant;APC|p.P1442Lfs*31|1|0.41|ENSG00000134982|chr5:112839918-112839918|C/-|frameshift_variant;APC|p.E1464Vfs*8|2|0.27|ENSG00000134982|chr5:112839979-112839982|AGAG/-|frameshift_variant;APC|p.Q1447Sfs*24|1|0.77|ENSG00000134982|chr5:112839931-112839937|CTCAAAC/-|frameshift_variant;APC|p.R1435Lfs*31|1|0.38|ENSG00000134982|chr5:112839896-112839917|CAGAAGTAAAACACCTCCACCA/-|frameshift_variant;APC|p.I1417Hfs*6|1|0.53|ENSG00000134982|chr5:112839839-112839840|-/G|frameshift_variant;APC|p.S1419*|1|0.33|ENSG00000134982|chr5:112839844-112839845|-/TA|frameshift_variant;APC|p.V1414Efs*5|1|0.58|ENSG00000134982|chr5:112839835-112839835|T/-|frameshift_variant;APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant;APC|p.S1403Mfs*13|1|0.05|ENSG00000134982|chr5:112839799-112839818|CCAGCTCCGTTCAGAGTGAA/-|frameshift_variant;APC|p.E1353Nfs*62|1|0.5|ENSG00000134982|chr5:112839649-112839649|T/-|frameshift_variant;APC|p.I1401Mfs*14|1|0.73|ENSG00000134982|chr5:112839796-112839796|T/-|frameshift_variant;APC|p.E1397Gfs*18|1|0.76|ENSG00000134982|chr5:112839784-112839784|A/-|frameshift_variant;APC|p.S1411Rfs*4|1|0.42|ENSG00000134982|chr5:112839827-112839827|T/-|frameshift_variant;APC|p.S1407Vfs*8|1|0.39|ENSG00000134982|chr5:112839812-112839812|G/-|frameshift_variant;APC|p.S1398Ifs*17|1|0.86|ENSG00000134982|chr5:112839787-112839787|G/-|frameshift_variant;APC|p.S1355Lfs*60|2|0.6|ENSG00000134982|chr5:112839654-112839654|T/-|frameshift_variant;APC|p.A1446Vfs*27|1|0.38|ENSG00000134982|chr5:112839931-112839931|C/-|frameshift_variant;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	ENSG00000134982|ENST00000257430|APC;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	ENSG00000134982|ENST00000257430|APC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.74530029296875	2	473.745639	945.476725	-0.48248	-0.00022857	-0.35793	-0.00016957	-0.84041	-0.00039814	473.745582534824	17.825	0.1868	17.825	17.737	17.924	0					9	4	3	0	0	0	0.076532	1	4520	4520		85.862	9.0152	1	464530			3987	3953;182	2265	2280	4060	4060					0.0018058679256682808
ATDIVTGLK	9	Unmodified	_ATDIVTGLK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2686462402344	2	459.26875	916.522947	0.072928	3.3494E-05	0.23122	0.00010619	0.30415	0.00013969	459.2687712022485	30.452	0.22193	30.452	30.377	30.599	0					15	8	3	0	0	0	0.095583	1	9701	9701		80.455	10.827	1	155090			3988	1011	2266	2281	4061	4061					0.06134651694662807
ATDIVTGLK	9	Unmodified	_ATDIVTGLK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.26873779296875	2	459.26875	916.522947	-0.078359	-3.5988E-05	0.060291	2.769E-05	-0.018067	-8.2977E-06	459.26894512835304	30.488	0.090775	30.488	30.442	30.533	0					4	2	2	0	0	0	0.12834	1	10397	10397		72.879	8.672	1	68126			3989	1011	2266	2281	4062	4062					0.06134651694662807
ATDIVTGLK	9	Unmodified	_ATDIVTGLK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2685241699219	2	459.26875	916.522947	-0.44562	-0.00020466	0.15981	7.3395E-05	-0.28581	-0.00013126	459.26869537647394	30.688	0.21956	30.688	30.578	30.797	0					11	4	3	0	0	0	0.015496	1	11400	11400		129.42	36.226	1	650200			3990	1011	2266	2281	4063	4063					0.06134651694662807
ATDIVTGLKQK	11	Unmodified	_ATDIVTGLKQK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3453979492188	2	587.34552	1172.67649	-0.19737	-0.00011592	0.14102	8.2826E-05	-0.056349	-3.3096E-05	587.3454695260676	25.333	0.17004	25.333	25.222	25.392	0					5	3	2	0	0	0	0.29287	1	8990	8990		63.426	19.049	1	204500			3991	1011	2267	2282	4064	4064					0.09705641740310966
ATDKQPYSK	9	Unmodified	_ATDKQPYSK_					0	0	0		ENST00000490110.5_1_9:114659495-114678089:+|nuORF;ENST00000489355.1_1_9:114659495-114677080:+|nuORF;ENST00000495085.1_1_9:114659495-114685228:+|nuORF;UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant;ENSG00000148154|ENST00000374279|UGCG	ENST00000490110.5_1_9:114659495-114678089:+|nuORF	ENST00000490110.5_1_9:114659495-114678089:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2666625976562	2	519.266739	1036.51892	1.3862	0.0007198	-0.88598	-0.00046006	0.5002	0.00025973	519.2664175534131	13.953	0.29517	13.953	13.82	14.115	0					12	7	3	0	0	0	0.026848	1	3316	3316		112.11	21.737	1	128490			3992	4812	2268	2283	4065	4065					0.002125622009543804
ATDKQPYSK	9	Unmodified	_ATDKQPYSK_					0	0	0		ENST00000490110.5_1_9:114659495-114678089:+|nuORF;ENST00000489355.1_1_9:114659495-114677080:+|nuORF;ENST00000495085.1_1_9:114659495-114685228:+|nuORF;UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant;ENSG00000148154|ENST00000374279|UGCG	ENST00000490110.5_1_9:114659495-114678089:+|nuORF	ENST00000490110.5_1_9:114659495-114678089:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.266357421875	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.902	1	13.902	13.402	14.402	0								0	0	0	0.23111	1	3339	3339		46.457	7.2039	1				3993	4812	2268	2283	4066	4066					0.002125622009543804
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7694702148438	2	512.769114	1023.52368	1.2206	0.0006259	-0.43129	-0.00022115	0.78934	0.00040475	512.7687652113483	17.962	0.66961	17.962	17.841	18.511	0					56	23	6	0	0	0	5.2046E-05	1	4380	4380		195.57	99.382	1	23322000			3994	2007;2348;3852	2269	2284	4067	4067					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7691040039062	2	512.769114	1023.52368	1.0729	0.00055017	-0.65481	-0.00033577	0.41814	0.00021441	512.7687516000652	18.262	0.6876	18.262	18.128	18.816	0					32	16	2	0	0	0	0.001056	2	5294	5294;5465		182.39	89.196	1	99337000			3995	2007;2348;3852	2269	2284	4068;4069	4068					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7695922851562	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.955	1	18.955	18.455	19.455	0								0	0	0	0.23111	1	5635	5635		46.457	2.0796	1				3996	2007;2348;3852	2269	2284	4070	4070					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	342.18182373046875	3	342.181835	1023.52368	-0.74103	-0.00025357	0.64502	0.00022071	-0.096009	-3.2852E-05	342.18204183825077	17.961	0.44495	17.961	17.869	18.314	0					36	14	5	0	0	0	0.18416	1	4597	4597		79.489	24.713	1	14035000			3997	2007;2348;3852	2269	2284	4071	4071					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.1817626953125	3	342.181835	1023.52368	1.4732	0.00050412	-1.6512	-0.00056502	-0.17797	-6.0899E-05	342.1813592887674	18.198	0.67299	18.198	18.088	18.761	0					39	13	5	0	0	0	0.12278	1	5553	5553		90.149	46.498	1	46330000			3998	2007;2348;3852	2269	2284	4072	4072					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.769287109375	2	512.769114	1023.52368	0.94119	0.00048261	-0.11732	-6.0158E-05	0.82387	0.00042246	512.7689426788129	18.026	0.74226	18.026	17.924	18.667	0					40	19	5	0	0	0	5.5375E-08	1	4608	4608		209.21	104.46	1	12453000			3999	2007;2348;3852	2269	2284	4073	4073					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7694091796875	2	512.769114	1023.52368	0.49743	0.00025507	0.19887	0.00010197	0.69629	0.00035704	512.7691513444828	18.053	0.65638	18.053	17.863	18.52	0					39	16	6	0	0	0	0.001056	1	4622	4622		182.39	75.384	1	8390200			4000	2007;2348;3852	2269	2284	4074	4074					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.1817626953125	3	342.181835	1023.52368	-0.058901	-2.0155E-05	0.014768	5.0532E-06	-0.044133	-1.5102E-05	342.1818082035521	18.051	0.2541	18.051	17.955	18.209	0					12	5	4	0	0	0	0.18416	1	4623	4623		79.489	34.467	1	1073400			4001	2007;2348;3852	2269	2284	4075	4075					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7702026367188	2	512.769114	1023.52368	0.072569	3.7211E-05	0.93241	0.00047811	1.005	0.00051532	512.7698187680062	18.229	1.4817	18.229	18.076	19.557	0					69	30	6	0	0	0	0.0028263	2	5401	5381;5401		169.65	73.462	1	58601000			4002	2007;2348;3852	2269	2284	4076;4077	4077					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7689208984375	2	512.769114	1023.52368	1.4322	0.0007344	-0.98556	-0.00050537	0.44666	0.00022903	512.7684503572902	18.215	0.70816	18.215	18.06	18.768	0					27	14	2	0	0	0	0.0037134	1	5393	5393		164.46	57.448	1	87156000			4003	2007;2348;3852	2269	2284	4078	4078					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.1817626953125	3	342.181835	1023.52368	1.5476	0.00052955	-1.5614	-0.00053429	-0.01386	-4.7425E-06	342.18125955948597	18.215	0.65926	18.215	18.109	18.768	0					41	13	5	0	0	0	0.17062	1	5394	5394		80.916	33.259	1	19054000			4004	2007;2348;3852	2269	2284	4079	4079					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.1820373535156	3	342.181835	1023.52368	3.0236	0.0010346	-3.1746	-0.0010863	-0.15109	-5.17E-05	342.1809579057659	18.198	0.75859	18.198	17.994	18.752	0					34	15	3	0	0	0	0.21419	1	5410	5410		75.652	22.716	1	30533000			4005	2007;2348;3852	2269	2284	4080	4080					0.01285446343717922
ATDKTFVEK	9	Unmodified	_ATDKTFVEK_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.778564453125	2	519.776939	1037.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.233	1	18.233	17.733	18.733	0								0	0	0	0.10319	1	4728	4728		70.816	26.439	1				4006	3829	2270	2285	4081	4081					0.022057328607616
ATDKTFVEK	9	Unmodified	_ATDKTFVEK_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.77734375	2	519.776939	1037.53933	1.118	0.00058113	-0.45983	-0.00023901	0.65822	0.00034213	519.7767655597016	18.468	0.16646	18.468	18.361	18.527	0					7	3	3	0	0	0	0.014413	1	5662	5662		131.62	38.421	1	470080			4007	3829	2270	2285	4082	4082					0.022057328607616
ATDKTFVEK	9	Unmodified	_ATDKTFVEK_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.77685546875	2	519.776939	1037.53933	0.31276	0.00016257	-0.43452	-0.00022585	-0.12175	-6.3285E-05	519.7766905213468	18.43	0.11818	18.43	18.37	18.489	0					6	2	3	0	0	0	0.029571	1	5525	5525		109.44	47.331	1	517500			4008	3829	2270	2285	4083	4083					0.022057328607616
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.279541015625	2	519.279315	1036.54408	1.3805	0.00071688	0.13898	7.2167E-05	1.5195	0.00078905	519.2789804203418	40.319	0.38387	40.319	40.243	40.627	0					23	15	2	0	0	0	0.070005	1	15353	15353		88.177	29.947	1	250220			4009	7501	2271	2286	4084	4084					0.027266170035318282
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.279296875	2	519.279315	1036.54408	0.17721	9.2019E-05	1.4574	0.00075677	1.6346	0.00084879	519.2798884807156	40.094	0.14294	40.094	40.04	40.183	0					12	8	2	0	0	0	0.24334	1	13438	13438		56.434	6.9922	1	70188			4010	7501	2271	2286	4085	4085					0.027266170035318282
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2800903320312	2	519.279315	1036.54408	0.97723	0.00050745	1.1225	0.00058291	2.0998	0.0010904	519.2799476765072	40.073	0.10287	40.073	40.02	40.123	0					10	5	2	0	0	0	0.25761	1	14249	14249		54.722	15.47	1	63952			4011	7501	2271	2286	4086	4086					0.027266170035318282
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2803955078125	2	519.279315	1036.54408	1.6021	0.00083193	-1.1319	-0.00058779	0.47016	0.00024414	519.278711184173	40.259	0.66772	40.259	40.002	40.67	0					22	15	2	0	0	0	0.12834	1	15948	15948		72.879	12.585	1	457150			4012	7501	2271	2286	4087	4087					0.027266170035318282
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2804565429688	2	519.279315	1036.54408	3.3541	0.0017417	-2.1102	-0.0010958	1.2439	0.00064593	519.2780700690346	40.254	0.31165	40.254	40.08	40.392	0					10	7	2	0	0	0	0.056004	1	15958	15958		93.143	33.025	1	256690			4013	7501	2271	2286	4088	4088					0.027266170035318282
ATDMSNEKRA	10	Unmodified	_ATDMSNEKRA_					0	0	0			REV__ENSG00000052723|ENST00000060969|SIKE1	REV__ENSG00000052723|ENST00000060969|SIKE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.84466552734375	3	374.845117	1121.51352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.41	1	14.41	13.91	14.91	0								0	0	0	0.4201	1	3731	3731		16.007	0	1		+		4014	13039	2272	2287	4089	4089					-0.04237484653162937
ATDNAKIIGK	10	Unmodified	_ATDNAKIIGK_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7990112304688	2	515.798206	1029.58186	1.1169	0.00057608	-0.024028	-1.2393E-05	1.0928	0.00056369	515.7979418241202	18.599	0.087355	18.599	18.551	18.638	0					4	2	2	0	0	0	0.27065	1	4899	4899		70.816	9.1249	1	71835			4015	4039	2273	2288	4090	4090					0.06825127989009161
ATDNAKIIGK	10	Unmodified	_ATDNAKIIGK_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7979736328125	2	515.798206	1029.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.608	1	18.608	18.108	19.108	0								0	0	0	0.22047	1	4890	4890		61.691	10.499	1				4016	4039	2273	2288	4091	4091					0.06825127989009161
ATDNAKIIGK	10	Unmodified	_ATDNAKIIGK_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.798095703125	2	515.798206	1029.58186	0.17092	8.816E-05	-0.30805	-0.00015889	-0.13713	-7.0732E-05	515.7981341740424	18.776	0.19423	18.776	18.669	18.863	0					10	4	3	0	0	0	0.12383	1	5698	5698		91.265	41.824	1	659370			4017	4039	2273	2288	4092	4092					0.06825127989009161
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.24334716796875	2	455.243067	908.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.926	1	15.926	15.426	16.426	0								0	0	0	0.05454	1	3723	3723		84.916	18.486	1				4018	3038	2274	2289	4093	4093					0.013683277206041566
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.24334716796875	2	455.243067	908.47158	-0.13572	-6.1785E-05	0.31404	0.00014296	0.17832	8.1177E-05	455.24320230049403	16.137	0.16659	16.137	16.03	16.196	0					7	3	3	0	0	0	0.0073253	1	4562	4562		148.04	50.57	1	268840			4019	3038	2274	2289	4094	4094					0.013683277206041566
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.24285888671875	2	455.243067	908.47158	-0.42528	-0.00019361	0.017422	7.9311E-06	-0.40786	-0.00018568	455.2430608646395	16.106	0.21991	16.106	16.047	16.267	0					8	4	3	0	0	0	0.055856	1	4402	4402		93.195	10.89	1	484830			4020	3038	2274	2289	4095	4095					0.013683277206041566
ATDPNILGR	9	Unmodified	_ATDPNILGR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7618408203125	2	478.761623	955.508694	0.0082824	3.9653E-06	-0.18293	-8.7581E-05	-0.17465	-8.3616E-05	478.7615604130199	28.897	0.47375	28.897	28.685	29.159	0					30	12	3	0	0	0	0.11898	1	9584	9584		75.043	10.836	1	427040			4021	8001	2275	2290	4096	4096					0.02915999266383551
ATDPNILGR	9	Unmodified	_ATDPNILGR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.761474609375	2	478.761623	955.508694	-0.31883	-0.00015264	-0.26637	-0.00012753	-0.5852	-0.00028017	478.76149593908804	28.899	0.67105	28.899	28.639	29.31	0					46	17	4	0	0	0	0.10915	1	9576	9576		77.318	13.11	1	1662300			4022	8001	2275	2290	4097	4097					0.02915999266383551
ATDPNILGR	9	Unmodified	_ATDPNILGR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.76116943359375	2	478.761623	955.508694	-0.65916	-0.00031558	0.073427	3.5154E-05	-0.58574	-0.00028043	478.7616191672091	29.068	0.6659	29.068	28.758	29.424	0					44	13	4	0	0	0	0.10506	2	10686	10519;10686		78.264	18.146	1	4801800			4023	8001	2275	2290	4098;4099	4099					0.02915999266383551
ATDRSHYAK	9	Unmodified	_ATDRSHYAK_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7618408203125	2	524.762155	1047.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.205	1	12.205	11.705	12.705	0								0	0	0	0.19847	1	2521	2521		51.193	18.38	1				4024	3165	2276	2291	4100	4100					-0.012097863647341
ATDRSHYAK	9	Unmodified	_ATDRSHYAK_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.76220703125	2	524.762155	1047.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.252	1	12.252	11.752	12.752	0								0	0	0	0.10826	1	2712	2712		69.628	10.846	1				4025	3165	2276	2291	4101	4101					-0.012097863647341
ATDRSHYAK	9	Unmodified	_ATDRSHYAK_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7610473632812	2	524.762155	1047.50976	1.6263	0.00085341	-0.4351	-0.00022832	1.1912	0.00062508	524.7618150575232	12.181	0.18837	12.181	12.091	12.279	0					9	5	2	0	0	0	0.38666	1	2530	2530		42.864	0.46813	1	309510			4026	3165	2276	2291	4102	4102					-0.012097863647341
ATDSEKAVEK	10	Unmodified	_ATDSEKAVEK_					0	0	0		MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-2|MIA3;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant;MIA3|p.N746Kfs*10|1|0.35|ENSG00000154305|chr1:222629450-222629451|-/A|frameshift_variant;MIA3|p.V974Sfs*4|1|0.36|ENSG00000154305|chr1:222630134-222630135|-/A|frameshift_variant;MIA3|p.M993Nfs*3|1|0.25|ENSG00000154305|chr1:222630191-222630192|-/A|frameshift_variant;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.S149_A150insQVS|1|0.06|ENSG00000154305|chr1:222627664-222627665|-/AGCCAAGTG|inframe_insertion;MIA3|p.N168Kfs*3|1|0.27|ENSG00000154305|chr1:222627716-222627717|-/A|frameshift_variant;nc|ENSG00000154305|Q5JRA6-3|MIA3;MIA3|p.H496Vfs*10|1|0.04|ENSG00000154305|chr1:222628705-222628706|-/GTTTCCC|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2759399414062	2	539.274761	1076.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.885	1	13.885	13.385	14.385	0								0	0	0	0.29594	1	3331	3331		51.528	2.0862	1				4027	5083	2277	2292	4103	4103					-0.0002377635280481627
ATDSNKYRAK	10	Unmodified	_ATDSNKYRAK_					0	0	0		ENST00000464258.5_1_3:50325776-50327005:-|nuORF;ENSG00000214706|ENST00000417626|IFRD2	ENST00000464258.5_1_3:50325776-50327005:-|nuORF	ENST00000464258.5_1_3:50325776-50327005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.3018798828125	2	577.301644	1152.58874	-0.072962	-4.2121E-05	0.24953	0.00014405	0.17657	0.00010193	577.3017747299057	12.38	0.14755	12.38	12.293	12.44	0					13	5	4	0	0	0	0.026898	1	2584	2584		120.31	58.199	1	578850			4028	7816	2278	2293	4104	4104					0.018544408695561287
ATDTRVRQK	9	Unmodified	_ATDTRVRQK_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8722229003906	3	358.871995	1073.59415	0.72374	0.00025973	-0.22147	-7.9479E-05	0.50227	0.00018025	358.8718487459579	11.745	0.11768	11.745	11.684	11.802	0					8	4	2	0	0	0	0.22377	1	2322	2322		58.782	9.2459	1	193190			4029	6064	2279	2294	4105	4105					0.06030164452022291
ATDTRVRQK	9	Unmodified	_ATDTRVRQK_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8719177246094	3	358.871995	1073.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.777	1	11.777	11.277	12.277	0								0	0	0	0.15451	1	2350	2350		58.782	12.81	1				4030	6064	2279	2294	4106	4106					0.06030164452022291
ATDVIVEI	8	Unmodified	_ATDVIVEI_					0	0	0		tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2426452636719	2	430.242201	858.469849	-0.32018	-0.00013775	1.8495	0.00079573	1.5293	0.00065797	430.24308125012243	35.252	0.21747	35.252	35.115	35.332	0					13	7	2	0	0	0	0.57802	1	12527	12527		52.299	0.96372	1	148810			4031	22745	2280	2295	4107	4107					0.03495273912017183
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.7715148925781	2	498.771657	995.528761	-0.052629	-2.625E-05	-0.063834	-3.1838E-05	-0.11646	-5.8088E-05	498.7716505404073	17.796	0.15941	17.796	17.72	17.88	0					11	4	4	0	0	0	0.021015	1	4305	4305		104.06	47.336	1	1087400			4032	2768	2281	2296	4108	4108					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.85009765625	3	332.850197	995.528761	0.64921	0.00021609	-1.458	-0.00048529	-0.80877	-0.0002692	332.8499172344575	18.089	0.53684	18.089	17.816	18.353	0					15	12	2	0	0	0	0.51991	1	5236	5236		30.318	0.76697	1	1182700			4033	2768	2281	2296	4109	4109					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.771484375	2	498.771657	995.528761	-0.23673	-0.00011808	-0.56565	-0.00028213	-0.80238	-0.0004002	498.7716981492116	18.076	0.9176	18.076	17.844	18.762	0					27	21	2	0	0	0	0.0028263	1	5228	5228		154.12	63.749	1	5221000			4034	2768	2281	2296	4110	4110					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.8502502441406	3	332.850197	995.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.828	1	17.828	17.328	18.328	0								0	0	0	0.25587	1	4546	4546		42.864	10.114	1				4035	2768	2281	2296	4111	4111					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7716064453125	2	498.771657	995.528761	-1.2484	-0.00062267	1.1367	0.00056695	-0.1117	-5.5715E-05	498.7722235536131	17.814	0.11539	17.814	17.754	17.869	0					6	3	2	0	0	0	0.0088974	1	4533	4533		127.46	69.65	1	214130			4036	2768	2281	2296	4112	4112					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.8501281738281	3	332.850197	995.528761	0.38943	0.00012962	-0.80507	-0.00026797	-0.41564	-0.00013835	332.84992595163084	18.064	0.32066	18.064	17.955	18.275	0					11	6	3	0	0	0	0.22837	1	5467	5467		58.23	10.27	1	714450			4037	2768	2281	2296	4113	4113					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7715148925781	2	498.771657	995.528761	-0.67749	-0.00033791	0.55699	0.00027781	-0.12049	-6.0099E-05	498.77193901247387	18.03	0.21888	18.03	17.971	18.19	0					8	4	3	0	0	0	0.001056	1	5474	5474		167.23	67.854	1	752410			4038	2768	2281	2296	4114	4114					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7716369628906	2	498.771657	995.528761	-2.1945	-0.0010946	1.8821	0.00093875	-0.31238	-0.00015581	498.7727454774033	17.883	0.2821	17.883	17.768	18.05	0					13	6	4	0	0	0	0.0063888	1	4547	4547		136.27	56.556	1	523500			4039	2768	2281	2296	4115	4115					0.030817502063428037
ATDYGTIKK	9	Unmodified	_ATDYGTIKK_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7715759277344	2	498.771657	995.528761	2.9168	0.0014548	-3.5507	-0.001771	-0.6339	-0.00031617	498.7701511432256	18.052	0.75474	18.052	17.8	18.555	0					28	15	4	0	0	0	0.0037134	1	5336	5336		148.99	46.213	1	7107400			4040	2768	2281	2296	4116	4116					0.030817502063428037
ATEDRYVD	8	Unmodified	_ATEDRYVD_					0	0	0			REV__PREP|p.G459Rfs*58|1|0.25|ENSG00000085377|chr6:105288837-105288838|-/T|frameshift_variant	REV__PREP|p.G459Rfs*58|1|0.25|ENSG00000085377|chr6:105288837-105288838|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7189025878906	2	484.719621	967.42469	-0.63817	-0.00030933	0.15575	7.5495E-05	-0.48242	-0.00023384	484.7195312783739	23.637	0.31667	23.637	23.429	23.745	0					9	6	2	0	0	0	0.70598	1	8160	8160		32.812	0.85756	1	256380	+		4041	13355	2282	2297	4117	4117					-0.06032576621191765
ATEDSQRYK	9	Unmodified	_ATEDSQRYK_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2652587890625	2	549.264727	1096.5149	0.24368	0.00013385	-0.19037	-0.00010456	0.053313	2.9283E-05	549.2651674382902	14.015	0.16297	14.015	13.957	14.12	0					10	3	4	0	0	0	0.28897	1	3554	3554		51.193	1.7511	1	626300			4042	3142	2283	2298	4118	4118					-0.029495272927761107
ATEEGQPPK	9	Unmodified	_ATEEGQPPK_					0	0	0		nc|ENSG00000187288|Q96AQ7-2|CIDEC;ENSG00000187288|ENST00000336832|CIDEC;nc|ENSG00000187288|Q96AQ7-4|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7373962402344	2	478.737814	955.461075	0.44108	0.00021116	-1.112	-0.00053235	-0.6709	-0.00032119	478.737224876163	14.826	0.25975	14.826	14.777	15.037	0					8	6	2	0	0	0	0.078509	1	3711	3711		85.161	26.379	1	395570			4043	7192	2284	2299	4119	4119					-0.018436997244748454
ATEEGQPPK	9	Unmodified	_ATEEGQPPK_					0	0	0		nc|ENSG00000187288|Q96AQ7-2|CIDEC;ENSG00000187288|ENST00000336832|CIDEC;nc|ENSG00000187288|Q96AQ7-4|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7373352050781	2	478.737814	955.461075	-0.65861	-0.0003153	-0.18148	-8.6884E-05	-0.84009	-0.00040219	478.7376265004174	14.769	0.21669	14.769	14.66	14.877	0					6	4	2	0	0	0	0.12239	1	3764	3764		74.255	17.534	1	153630			4044	7192	2284	2299	4120	4120					-0.018436997244748454
ATEGGVLKK	9	Unmodified	_ATEGGVLKK_					0	0	0		nc|ENSG00000041982|P24821-3|TNC;ENSG00000041982|ENST00000350763|TNC;TNC|p.V28D|1|0.49|ENSG00000041982|chr9:115090936-115090936|A/T|missense_variant;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-3|TNC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7685852050781	2	451.768917	901.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.067	1	16.067	15.567	16.567	0								0	0	0	0.11184	1	3597	3597		68.787	2.9837	1				4045	1197	2285	2300	4121	4121					0.06858071414524147
ATEGKLKS	8	Unmodified	_ATEGKLKS_					0	0	0			REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.2398376464844	2	417.239993	832.465432	-1.3992	-0.00058379	1.2163	0.0005075	-0.18284	-7.629E-05	417.24050801947953	22.82	0.14334	22.82	22.771	22.914	0					9	5	2	0	0	0	0.70598	1	6767	6767		32.812	1.2826	1	103170	+		4046	16980	2286	2301	4122	4122					0.042498094890902394
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.8785705566406	3	405.878704	1214.61428	0.61987	0.00025159	-0.90413	-0.00036697	-0.28426	-0.00011537	405.8783690802741	21.3	0.15335	21.3	21.209	21.362	0					12	4	4	0	0	0	0.52595	1	5847	5847		51.727	29.947	1	414070			4047	3063	2287	2302	4123	4123					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.3150634765625	2	608.314417	1214.61428	0.15528	9.4462E-05	0.084348	5.131E-05	0.23963	0.00014577	608.3145056024089	21.276	0.18786	21.276	21.198	21.386	0					12	5	3	0	0	0	0.089609	1	5824	5824		92.239	39.302	1	385100			4048	3063	2287	2302	4124	4124					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.314453125	2	608.314417	1214.61428	-0.62272	-0.00037881	0.85628	0.00052089	0.23356	0.00014208	608.3149346199052	21.605	0.23352	21.605	21.504	21.738	0					13	5	3	0	0	0	5.7103E-06	1	6898	6898		183.72	98.561	1	3368900			4049	3063	2287	2302	4125	4125					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	608.3147583007812	2	608.314417	1214.61428	-0.61686	-0.00037524	0.68492	0.00041664	0.06806	4.1402E-05	608.314898604538	21.344	0.17412	21.344	21.254	21.428	0					14	5	3	0	0	0	0.00055771	1	6097	6097		139.38	77.275	1	564410			4050	3063	2287	2302	4126	4126					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.3145141601562	2	608.314417	1214.61428	0.81396	0.00049514	-0.54718	-0.00033286	0.26678	0.00016229	608.3140970809761	21.517	0.31862	21.517	21.407	21.725	0					18	6	4	0	0	0	2.461E-05	1	7157	7157		171.33	72.701	1	5926500			4051	3063	2287	2302	4127	4127					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.8789367675781	3	405.878704	1214.61428	0.14234	5.7774E-05	0.57439	0.00023313	0.71674	0.00029091	405.878902604761	21.414	0.15402	21.414	21.311	21.465	0					7	3	3	0	0	0	0.33911	1	6192	6192		67.214	42.938	1	137960			4052	3063	2287	2302	4128	4128					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	608.3146362304688	2	608.314417	1214.61428	0.42928	0.00026114	-0.22066	-0.00013423	0.20862	0.00012691	608.3142637233906	21.397	0.15396	21.397	21.294	21.448	0					5	3	2	0	0	0	0.07149	1	6206	6206		96.665	40.231	1	250290			4053	3063	2287	2302	4129	4129					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.87860107421875	3	405.878704	1214.61428	-0.56854	-0.00023076	0.37484	0.00015214	-0.1937	-7.8618E-05	405.8788772428247	21.548	0.26686	21.548	21.437	21.704	0					17	5	5	0	0	0	0.15663	1	7017	7017		87.713	60.964	1	2593300			4054	3063	2287	2302	4130	4130					0.015558706013280243
ATEIIGAICK	10	Unmodified	_ATEIIGAICK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.78448486328125	2	509.78371	1017.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.726	1	37.726	37.226	38.226	0								0	0	0	0.35072	1	14323	14323		42.864	5.0528	1				4055	3193	2288	2303	4131	4131					0.04479267368344608
ATEKSVKTK	9	Unmodified	_ATEKSVKTK_					0	0	0		ENST00000524244.5_1_5:159849319-159849927:+|nuORF;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000524244.5_1_5:159849319-159849927:+|nuORF	ENST00000524244.5_1_5:159849319-159849927:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.29351806640625	2	496.292756	990.57096	0.73897	0.00036674	0.3521	0.00017475	1.0911	0.00054149	496.2930304214425	10.92	0.039634	10.92	10.899	10.939	0					4	2	2	0	0	0	0.18416	1	2133	2133		63.534	24.281	1	46965			4056	5710	2289	2304	4132	4132					0.07529725614722338
ATEKVRVGK	9	Unmodified	_ATEKVRVGK_					0	0	0			REV__FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant	REV__FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.8697509765625	3	329.869703	986.587279	0.63917	0.00021084	-0.51039	-0.00016836	0.12878	4.248E-05	329.86955003563395	16.784	0.2473	16.784	16.705	16.952	0					11	6	2	0	0	0	0.20551	1	4628	4628		58.23	0	1	3402700	+		4057	17292	2290	2305	4133	4133					0.09344851571484014
ATEMGTTKK	9	Unmodified	_ATEMGTTKK_					0	0	0		nc|ENSG00000121152|Q15003-2|NCAPH;ENSG00000121152|ENST00000240423|NCAPH;ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant	nc|ENSG00000121152|Q15003-2|NCAPH	nc|ENSG00000121152|Q15003-2|NCAPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.75006103515625	2	483.749867	965.485181	-0.60744	-0.00029385	0.57833	0.00027977	-0.029102	-1.4078E-05	483.7502320021098	12.924	0.18372	12.924	12.87	13.054	0					5	4	2	0	0	0	0.0061615	1	3034	3034		153.04	62.259	1	764570			4058	3214	2291	2306	4134	4134					0.0010581743754300987
ATEPPTESLLK	11	Unmodified	_ATEPPTESLLK_					0	0	0		nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.3217163085938	2	593.321711	1184.62887	0.28896	0.00017144	-0.087469	-5.1897E-05	0.20149	0.00011955	593.3214980032309	33.218	0.39742	33.218	33.141	33.538	0					17	10	3	0	0	0	0.33911	1	12270	12270		58.246	13.869	1	193590			4059	1305	2292	2307	4135	4135					0.04393942749470625
ATEQEDAAVAK	11	Unmodified	_ATEQEDAAVAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.7780151367188	2	566.777667	1131.54078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.872	1	17.872	17.372	18.372	0								0	0	0	0.45674	1	4567	4567		18.531	4.3939	1				4060	3441	2293	2308	4136	4136					-0.019726778411495616
ATEQEDAAVAK	11	Unmodified	_ATEQEDAAVAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7778930664062	2	566.777667	1131.54078	0.79191	0.00044884	-0.46697	-0.00026467	0.32495	0.00018417	566.7774414027572	18.064	0.1673	18.064	17.955	18.122	0					8	3	3	0	0	0	0.18934	1	5493	5493		75.566	25.532	1	362470			4061	3441	2293	2308	4137	4137					-0.019726778411495616
ATEQEDAAVAK	11	Unmodified	_ATEQEDAAVAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.77783203125	2	566.777667	1131.54078	0.63318	0.00035887	-0.55624	-0.00031527	0.07694	4.3608E-05	566.7774021938055	18.036	0.26042	18.036	17.978	18.239	0					8	5	3	0	0	0	0.00078742	1	5333	5333		136.49	67.702	1	346700			4062	3441	2293	2308	4138	4138					-0.019726778411495616
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.76361083984375	2	479.763832	957.513111	-1.4036	-0.00067341	0.78835	0.00037822	-0.61527	-0.00029518	479.76418925391096	19.317	0.24139	19.317	19.215	19.456	0					19	7	4	0	0	0	0.024312	1	5200	5200		114.86	32.618	1	1385600			4063	3188	2294	2309	4139	4139					0.032654636892857525
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7635192871094	2	479.763832	957.513111	-0.11288	-5.4158E-05	-0.32893	-0.00015781	-0.44181	-0.00021197	479.7636017693844	19.535	0.41308	19.535	19.43	19.843	0					16	8	3	0	0	0	0.017741	1	6181	6181		125.71	24.46	1	1775500			4064	3188	2294	2309	4140	4140					0.032654636892857525
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.763916015625	2	479.763832	957.513111	-0.3085	-0.00014801	-0.37747	-0.00018109	-0.68596	-0.0003291	479.7636610919146	19.36	0.27381	19.36	19.274	19.548	0					19	6	4	0	0	0	0.014413	1	5233	5233		131.62	30.364	1	4154800			4065	3188	2294	2309	4141	4141					0.032654636892857525
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7632751464844	2	479.763832	957.513111	-0.65224	-0.00031292	-0.267	-0.0001281	-0.91924	-0.00044102	479.76370426074055	19.5	0.56676	19.5	19.394	19.961	0					47	11	5	0	0	0	0.00065248	1	6025	6025		186.41	69.507	1	24819000			4066	3188	2294	2309	4142	4142					0.032654636892857525
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.76336669921875	2	479.763832	957.513111	0.92153	0.00044212	-1.7165	-0.0008235	-0.79495	-0.00038139	479.76310651422233	19.533	0.61704	19.533	19.378	19.995	0					44	12	6	0	0	0	3.3778E-05	1	6041	6041		199.89	75.297	1	27915000			4067	3188	2294	2309	4143	4143					0.032654636892857525
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.81103515625	2	543.811313	1085.60807	1.1616	0.00063168	-0.56627	-0.00030794	0.59532	0.00032374	543.8108318954403	16.29	0.15387	16.29	16.21	16.364	0					16	7	3	0	0	0	0.09653	1	3673	3673		96.034	33.926	1	350830			4068	3188	2295	2310	4144	4144					0.06869397160448898
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8764343261719	3	362.876634	1085.60807	0.73605	0.0002671	-1.4917	-0.0005413	-0.75564	-0.0002742	362.8760302801889	16.575	0.26769	16.575	16.407	16.674	0					13	4	4	0	0	0	0.55603	1	4533	4533		59.931	30.38	1	811390			4069	3188	2295	2310	4145	4145					0.06869397160448898
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8117065429688	2	543.811313	1085.60807	0.35251	0.0001917	0.28339	0.00015411	0.63589	0.00034581	543.8115178655628	16.569	0.18114	16.569	16.481	16.662	0					13	4	4	0	0	0	0.0013826	1	4524	4524		178.55	76.947	1	2640800			4070	3188	2295	2310	4146	4146					0.06869397160448898
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.8763427734375	3	362.876634	1085.60807	0.28572	0.00010368	-0.50619	-0.00018368	-0.22047	-8.0003E-05	362.87638915484433	16.539	0.16588	16.539	16.43	16.596	0					7	3	3	0	0	0	0.56063	1	4736	4736		66.92	24.582	1	797990			4071	3188	2295	2310	4147	4147					0.06869397160448898
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8115234375	2	543.811313	1085.60807	0.32299	0.00017564	0.45391	0.00024684	0.7769	0.00042249	543.8114523754	16.506	0.16663	16.506	16.396	16.563	0					7	3	3	0	0	0	0.010125	1	4740	4740		142.36	54.607	1	813240			4072	3188	2295	2310	4148	4148					0.06869397160448898
ATESGMLYH	9	Unmodified	_ATESGMLYH_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7261047363281	2	504.726392	1007.43823	0.67143	0.00033889	-0.39529	-0.00019951	0.27613	0.00013937	504.7262687105523	27.474	0.13917	27.474	27.432	27.571	0					9	4	3	0	0	0	0.1236	1	8479	8479		73.975	22.639	1	77683			4073	2536	2296	2311	4149	4149					-0.0651904211360943
ATESGMLYH	9	Unmodified	_ATESGMLYH_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7264404296875	2	504.726392	1007.43823	0.78434	0.00039588	-0.9815	-0.00049539	-0.19716	-9.9513E-05	504.72582284428375	27.754	0.27218	27.754	27.623	27.895	0					11	6	2	0	0	0	0.013544	1	9724	9724		133.47	74.687	1	565980			4074	2536	2296	2311	4150	4150					-0.0651904211360943
ATESGMLYH	9	Unmodified	_ATESGMLYH_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7257080078125	2	504.726392	1007.43823	-0.81321	-0.00041045	0.48271	0.00024363	-0.3305	-0.00016681	504.7266102281382	27.479	0.23875	27.479	27.412	27.651	0					11	8	2	0	0	0	0.024477	1	8763	8763		114.59	47.092	1	102680			4075	2536	2296	2311	4151	4151					-0.0651904211360943
ATESGMLYH	9	Unmodified	_ATESGMLYH_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.72607421875	2	504.726392	1007.43823	1.0402	0.00052501	-1.7024	-0.00085927	-0.66225	-0.00033426	504.7256203512328	27.756	0.36225	27.756	27.601	27.964	0					13	7	2	0	0	0	0.011193	1	10104	10104		138.48	79.698	1	859250			4076	2536	2296	2311	4152	4152					-0.0651904211360943
ATESGMLYH	9	Unmodified	_ATESGMLYH_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7262268066406	2	504.726392	1007.43823	0.11643	5.8765E-05	0.064539	3.2574E-05	0.18097	9.1339E-05	504.72649731500917	27.553	0.21867	27.553	27.494	27.713	0					7	5	2	0	0	0	0.18605	1	9033	9033		63.306	18.929	1	69075			4077	2536	2296	2311	4153	4153					-0.0651904211360943
ATETNLPLL	9	Unmodified	_ATETNLPLL_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2762756347656	2	486.274032	970.533512	2.5187	0.0012248	2.3814	0.001158	4.9001	0.0023828	486.27500249187096	12.374	0.1559	12.374	12.29	12.446	0					10	5	3	0	0	0	0.51817	1	2608	2608		30.504	1.3541	1	370870			4078	3148	2297	2312	4154	4154					0.047066343491110274
ATETTTTRHK	10	Unmodified	_ATETTTTRHK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.2992553710938	2	573.299101	1144.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.863	1	10.863	10.363	11.363	0								0	0	0	0.36846	1	2112	2112		40.058	17.016	1				4079	2791	2298	2313	4155	4155					0.01714137006956662
ATEVQIGIS	9	Unmodified	_ATEVQIGIS_					0	0	0			REV__nc|ENSG00000198010|Q9P1A6-2|DLGAP2	REV__nc|ENSG00000198010|Q9P1A6-2|DLGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.25030517578125	2	459.250557	916.486562	0.80467	0.00036955	-1.4939	-0.00068607	-0.68922	-0.00031652	459.24995932115314	26.541	0.52848	26.541	26.247	26.775	0					22	12	4	0	0	0	0.078509	1	9176	9176		85.161	2.9203	1	1207100	+		4080	21183	2299	2314	4156	4156					0.024977747979505693
ATEVVNPLLE	10	Unmodified	_ATEVVNPLLE_					0	0	0		LRRC71|p.P458H|1|0.49|ENSG00000160838|chr1:156931959-156931959|C/A|missense_variant;nc|ENSG00000160838|Q8N4P6-2|LRRC71;ENSG00000160838|ENST00000337428|LRRC71	LRRC71|p.P458H|1|0.49|ENSG00000160838|chr1:156931959-156931959|C/A|missense_variant	LRRC71|p.P458H|1|0.49|ENSG00000160838|chr1:156931959-156931959|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.2015380859375	3	362.201007	1083.58119	-0.94158	-0.00034104	1.9136	0.00069311	0.97202	0.00035206	362.2018637595467	23.056	0.099928	23.056	22.998	23.098	0					6	3	2	0	0	0	0.61238	1	6887	6887		32.751	5.7032	1	93691			4081	5388	2300	2315	4157	4157					0.04274288549299854
ATFALDPKK	9	Unmodified	_ATFALDPKK_					0	0	0			REV__ENST00000429630.1_1_7:143077188-143077587:-|nuORF	REV__ENST00000429630.1_1_7:143077188-143077587:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7824401855469	2	495.784567	989.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.672	1	18.672	18.172	19.172	0								0	0	0	0.33029	1	4684	4684		15.642	0	1		+		4082	19148	2301	2316	4158	4158					0.059386444485994616
ATFCRELQIL	10	Unmodified	_ATFCRELQIL_					0	0	0			REV__ENSG00000256980|ENST00000370388|KHDC1L	REV__ENSG00000256980|ENST00000370388|KHDC1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.3220825195312	2	597.320991	1192.62743	1.8408	0.0010996	-1.2537	-0.00074883	0.58718	0.00035074	597.3203515949125	45.978	0.090321	45.978	45.943	46.033	0					6	4	2	0	0	0	0.55603	1	18417	18417		39.253	5.0803	1	38728	+		4083	17762	2302	2317	4159	4159					0.03882030179738649
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2712097167969	2	499.271293	996.528032	-1.0521	-0.00052526	0.98978	0.00049417	-0.062273	-3.1091E-05	499.2717767696077	41.002	0.13843	41.002	40.963	41.101	0					15	8	3	0	0	0	0.35021	1	13663	13663		45.972	8.8131	1	96857			4084	6966	2303	2318	4160	4160					0.029629555573023936
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2718200683594	2	499.271293	996.528032	-0.33709	-0.0001683	1.2169	0.00060755	0.87978	0.00043925	499.2721103518296	40.967	0.18041	40.967	40.838	41.018	0					9	5	2	0	0	0	0.44593	1	14489	14489		37.812	8.662	1	56003			4085	6966	2303	2318	4161	4161					0.029629555573023936
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.27191162109375	2	499.271293	996.528032	0.16664	8.3197E-05	0.0082141	4.1011E-06	0.17485	8.7298E-05	499.2711940140699	40.961	0.2142	40.961	40.832	41.046	0					13	7	2	0	0	0	0.36892	1	14487	14487		44.377	11.565	1	92249			4086	6966	2303	2318	4162	4162					0.029629555573023936
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2715148925781	2	499.271293	996.528032	-0.72721	-0.00036307	0.40815	0.00020378	-0.31906	-0.0001593	499.2714476899878	41.168	0.39735	41.168	41.03	41.428	0					22	9	3	0	0	0	0.037924	1	16345	16345		101.25	49.917	1	908700			4087	6966	2303	2318	4163	4163					0.029629555573023936
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.27099609375	2	499.271293	996.528032	1.0611	0.00052976	-1.3469	-0.00067248	-0.28585	-0.00014272	499.2704874085838	41.163	0.50735	41.163	41.06	41.568	0					25	12	3	0	0	0	0.02953	1	16338	16338		109.48	46.172	1	1022600			4088	6966	2303	2318	4164	4164					0.029629555573023936
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2716979980469	2	499.271293	996.528032	2.9173	0.0014565	-2.9431	-0.0014694	-0.025749	-1.2856E-05	499.2700983007679	41.182	0.47435	41.182	41.002	41.477	0					16	11	2	0	0	0	0.12834	1	16351	16351		72.879	23.343	1	289500			4089	6966	2303	2318	4165	4165					0.029629555573023936
ATFGTQVVEK	10	Unmodified	_ATFGTQVVEK_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.2906494140625	2	540.290214	1078.56587	0.96683	0.00052237	-0.1125	-6.0781E-05	0.85434	0.00046159	540.2901486333417	27.931	0.14886	27.931	27.839	27.988	0					8	5	2	0	0	0	0.42408	1	8660	8660		53.597	12.17	1	125540			4090	3430	2304	2319	4166	4166					0.029734217520854145
ATFGTQVVEK	10	Unmodified	_ATFGTQVVEK_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.29052734375	2	540.290214	1078.56587	0.3066	0.00016565	0.51525	0.00027839	0.82185	0.00044404	540.2903296474308	28.177	0.16249	28.177	28.112	28.275	0					5	3	2	0	0	0	0.31784	1	10298	10298		65.278	12.189	1	142740			4091	3430	2304	2319	4167	4167					0.029734217520854145
ATFGTQVVEK	10	Unmodified	_ATFGTQVVEK_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.2897338867188	2	540.290214	1078.56587	-1.4795	-0.00079934	1.5731	0.00084995	0.093662	5.0605E-05	540.2908068539194	27.989	0.21176	27.989	27.892	28.103	0					8	5	2	0	0	0	0.41055	1	9235	9235		55.084	10.707	1	130240			4092	3430	2304	2319	4168	4168					0.029734217520854145
ATFGTQVVEK	10	Unmodified	_ATFGTQVVEK_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2905883789062	2	540.290214	1078.56587	3.4738	0.0018768	-3.016	-0.0016295	0.45776	0.00024733	540.2886155193784	28.135	0.21861	28.135	28.026	28.245	0					10	4	3	0	0	0	0.048505	1	10167	10167		109.83	27.079	1	1175200			4093	3430	2304	2319	4169	4169					0.029734217520854145
ATFHGSTTHTK	11	Unmodified	_ATFHGSTTHTK_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.2939453125	2	594.293819	1186.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.028	1	14.028	13.528	14.528	0								0	0	0	0.14788	1	3328	3328		68.846	12.125	1				4094	7741	2305	2320	4170	4170					-0.012738456474835402
ATFIMSLV	8	Unmodified	_ATFIMSLV_					0	0	0		tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.2452697753906	2	441.243689	880.472826	0.72109	0.00031818	2.8949	0.0012774	3.616	0.0015955	441.2449378247307	14.048	0.20821	14.048	13.946	14.154	0					6	4	2	0	0	0	0.65276	1	3419	3419		40.573	3.4135	1	199500			4095	22642	2306	2321	4171	4171					0.027808257651713575
ATFKLEKNK	9	Unmodified	_ATFKLEKNK_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF;DHX29|p.D780Tfs*15|1|0.32|ENSG00000067248|chr5:55276356-55276356|T/-|frameshift_variant;DHX29|p.I805Nfs*17|1|0.27|ENSG00000067248|chr5:55276281-55276282|-/C|frameshift_variant;DHX29|p.K807Nfs*16|1|0.19|ENSG00000067248|chr5:55276272-55276272|T/-|frameshift_variant	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.2132568359375	3	360.213358	1077.61824	0.48246	0.00017379	-0.50453	-0.00018174	-0.022071	-7.9501E-06	360.21316560755804	18.509	0.26681	18.509	18.416	18.683	0					10	6	3	0	0	0	0.17062	1	5416	5416		65.157	27.346	1	1217300			4096	1407	2307	2322	4172	4172					0.0825400488570267
ATFKLEKNK	9	Unmodified	_ATFKLEKNK_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF;DHX29|p.D780Tfs*15|1|0.32|ENSG00000067248|chr5:55276356-55276356|T/-|frameshift_variant;DHX29|p.I805Nfs*17|1|0.27|ENSG00000067248|chr5:55276281-55276282|-/C|frameshift_variant;DHX29|p.K807Nfs*16|1|0.19|ENSG00000067248|chr5:55276272-55276272|T/-|frameshift_variant	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8169555664062	2	539.816399	1077.61824	0.26277	0.00014185	0.69806	0.00037683	0.96084	0.00051868	539.816787289267	18.509	0.18431	18.509	18.416	18.6	0					12	4	4	0	0	0	0.034688	1	5437	5437		98.582	5.3865	1	1258400			4097	1407	2307	2322	4173	4173					0.0825400488570267
ATFKLEKNK	9	Unmodified	_ATFKLEKNK_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF;DHX29|p.D780Tfs*15|1|0.32|ENSG00000067248|chr5:55276356-55276356|T/-|frameshift_variant;DHX29|p.I805Nfs*17|1|0.27|ENSG00000067248|chr5:55276281-55276282|-/C|frameshift_variant;DHX29|p.K807Nfs*16|1|0.19|ENSG00000067248|chr5:55276272-55276272|T/-|frameshift_variant	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.2129211425781	3	360.213358	1077.61824	-0.92242	-0.00033227	0.86382	0.00031116	-0.058597	-2.1108E-05	360.213679861338	18.2	0.14066	18.2	18.125	18.265	0					8	5	3	0	0	0	0.47473	1	4714	4714		35.152	9.578	1	74805			4098	1407	2307	2322	4174	4174					0.0825400488570267
ATFKLEKNK	9	Unmodified	_ATFKLEKNK_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF;DHX29|p.D780Tfs*15|1|0.32|ENSG00000067248|chr5:55276356-55276356|T/-|frameshift_variant;DHX29|p.I805Nfs*17|1|0.27|ENSG00000067248|chr5:55276281-55276282|-/C|frameshift_variant;DHX29|p.K807Nfs*16|1|0.19|ENSG00000067248|chr5:55276272-55276272|T/-|frameshift_variant	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8171997070312	2	539.816399	1077.61824	0.30536	0.00016484	1.1381	0.00061436	1.4434	0.0007792	539.8170434838552	18.434	0.11602	18.434	18.377	18.493	0					6	2	3	0	0	0	0.067603	1	5669	5669		82.75	0	1	491840			4099	1407	2307	2322	4175	4175					0.0825400488570267
ATFLDPRYK	9	Unmodified	_ATFLDPRYK_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.8695373535156	3	370.869591	1109.58694	0.77621	0.00028787	-0.068807	-2.5518E-05	0.7074	0.00026235	370.8692918548848	30.763	0.73455	30.763	30.405	31.14	0					40	17	3	0	0	0	0.50461	1	11095	11095		47.657	18.487	1	525120			4100	7817	2308	2323	4176	4176					0.03653431851603273
ATFLDPRYK	9	Unmodified	_ATFLDPRYK_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.8013916015625	2	555.800749	1109.58694	0.57971	0.0003222	0.1791	9.9546E-05	0.75881	0.00042175	555.8008809055829	30.779	0.69143	30.779	30.432	31.124	0					26	16	2	0	0	0	0.056004	1	11102	11102		93.143	24.356	1	739150			4101	7817	2308	2323	4177	4177					0.03653431851603273
ATFLDPRYK	9	Unmodified	_ATFLDPRYK_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.8015747070312	2	555.800749	1109.58694	-0.4514	-0.00025089	0.55151	0.00030653	0.10012	5.5645E-05	555.8012573861607	30.584	0.26311	30.584	30.404	30.667	0					14	9	2	0	0	0	0.4966	1	10017	10017		32.812	6.1195	1	104830			4102	7817	2308	2323	4178	4178					0.03653431851603273
ATFLDPRYK	9	Unmodified	_ATFLDPRYK_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.80078125	2	555.800749	1109.58694	-0.10348	-5.7512E-05	0.92125	0.00051203	0.81777	0.00045452	555.8011687439767	30.767	0.64586	30.767	30.432	31.077	0					35	14	4	0	0	0	0.46194	1	11453	11453		36.447	10.873	1	516230			4103	7817	2308	2323	4179	4179					0.03653431851603273
ATFLLNEAPER	11	Unmodified	_ATFLLNEAPER_					0	0	0		ENST00000548860.5_1_12:49209223-49210729:+|nuORF	ENST00000548860.5_1_12:49209223-49210729:+|nuORF	ENST00000548860.5_1_12:49209223-49210729:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.8907775878906	3	420.890944	1259.651	-0.10161	-4.2765E-05	-0.50332	-0.00021184	-0.60492	-0.00025461	420.8907435353703	25.992	0.31433	25.992	25.934	26.249	0					12	6	3	0	0	0	0.4771	1	9260	9260		45.908	1.2687	1	782200			4104	10602	2309	2324	4180	4180					0.03156167217866823
ATFMEVLTK	9	Unmodified	_ATFMEVLTK_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.279052734375	2	520.27826	1038.54197	1.4355	0.00074684	0.5359	0.00027881	1.9714	0.0010257	520.2786447074774	44.099	0.17197	44.099	44.024	44.196	0					20	10	3	0	0	0	0.13726	1	16562	16562		70.816	16.04	1	170320			4105	11709	2310	2325	4181	4181					0.024238649940571122
ATFMEVLTK	9	Unmodified	_ATFMEVLTK_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2787475585938	2	520.27826	1038.54197	1.6846	0.00087645	-1.2499	-0.00065028	0.43471	0.00022617	520.2777191020668	44.06	0.26844	44.06	43.949	44.218	0					26	15	3	0	0	0	0.54081	1	17178	17178		28.081	0.19925	1	169620			4106	11709	2310	2325	4182	4182					0.024238649940571122
ATFMEVLTK	9	Unmodified	_ATFMEVLTK_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.280517578125	2	520.27826	1038.54197	1.0091	0.00052503	0.57382	0.00029854	1.583	0.00082358	520.2786701021188	43.858	0.055122	43.858	43.823	43.878	0					5	3	2	0	0	0	0.35021	1	15149	15149		45.972	11.8	1	36344			4107	11709	2310	2325	4183	4183					0.024238649940571122
ATFMEVLTK	9	Unmodified	_ATFMEVLTK_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2780151367188	2	520.27826	1038.54197	0.33772	0.00017571	1.2857	0.00066891	1.6234	0.00084461	520.279032246422	44.006	0.22546	44.006	43.909	44.134	0					22	9	3	0	0	0	0.070005	1	17610	17610		88.177	36.984	1	246870			4108	11709	2310	2325	4184	4184					0.024238649940571122
ATFMEVLTK	9	Unmodified	_ATFMEVLTK_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2794799804688	2	520.27826	1038.54197	1.6233	0.00084458	-1.4549	-0.00075695	0.16844	8.7634E-05	520.2775971475935	44.025	0.29267	44.025	43.902	44.195	0					26	12	3	0	0	0	0.15558	1	17606	17606		66.962	22.585	1	413060			4109	11709	2310	2325	4185	4185					0.024238649940571122
ATFMEVLTK	9	Oxidation (M)	_ATFM(Oxidation (M))EVLTK_		ATFM(1)EVLTK		ATFM(75)EVLTK	0	0	1		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2762451171875	2	528.275718	1054.53688	0.69558	0.00036746	0.15225	8.0428E-05	0.84782	0.00044788	528.2757557749994	33.676	0.1933	33.676	33.6	33.793	0					6	4	2	0	0	0	0.11898	1	12831	12831		75.043	22.107	1	96031			4110	11709	2310	2326	4186	4186		457			0.011795611314255439
ATFNFSQKNK	10	Unmodified	_ATFNFSQKNK_					0	0	0		tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.53887939453125	3	395.540134	1183.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.325	1	14.325	13.825	14.825	0								0	0	0	0.3963	1	3537	3537		31.634	5.5709	1				4111	22588	2311	2327	4187	4187					0.01411628874939197
ATFPDPNVK	9	Unmodified	_ATFPDPNVK_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|3|0.3|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7582702636719	2	494.758549	987.502546	1.4525	0.00071864	-1.426	-0.00070552	0.026521	1.3122E-05	494.75778566510354	29.404	0.44327	29.404	29.169	29.612	0					42	15	4	0	0	0	0.21263	1	9221	9221		60.118	14.166	1	541060			4112	5283	2312	2328	4188	4188					0.008294810348502324
ATFPDPNVK	9	Unmodified	_ATFPDPNVK_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|3|0.3|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.75836181640625	2	494.758549	987.502546	-0.042616	-2.1084E-05	0.16789	8.3064E-05	0.12527	6.198E-05	494.75840206570416	29.597	0.55109	29.597	29.381	29.933	0					32	11	4	0	0	0	0.04067	1	10999	10999		98.582	35.276	1	1297200			4113	5283	2312	2328	4189	4189					0.008294810348502324
ATFPLSVQK	9	Unmodified	_ATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.78485107421875	2	495.784567	989.554582	-0.062302	-3.0889E-05	-0.29747	-0.00014748	-0.35977	-0.00017837	495.7843956120574	34.285	0.39104	34.285	34.153	34.544	0					41	17	3	0	0	0	0.067603	1	11188	11188		72.879	24.92	1	711440			4114	2622	2313	2329	4190	4190					0.05938644448622199
ATFPLSVQK	9	Unmodified	_ATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7843933105469	2	495.784567	989.554582	-0.36626	-0.00018159	-1.1818	-0.00058594	-1.5481	-0.00076752	495.7845423716963	34.553	0.86109	34.553	34.132	34.993	0					63	22	7	0	0	0	3.0938E-05	1	12875	12875		185.72	54.687	1	4455100			4115	2622	2313	2329	4191	4191					0.05938644448622199
ATFSSSHRY	9	Unmodified	_ATFSSSHRY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;ENST00000507867.5_1_4:83798919-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;SEC31A|p.K616Nfs*18|1|0.26|ENSG00000138674|chr4:82856985-82856985|T/-|frameshift_variant	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.2489013671875	2	528.24888	1054.48321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.581	1	19.581	19.081	20.081	0								0	0	0	0.22075	1	5091	5091		47.96	0.30219	1				4116	4281	2314	2330	4192	4192					-0.04185475256031168
ATFSSSHRYHK	11	Unmodified	_ATFSSSHRYHK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;ENST00000507867.5_1_4:83798919-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;SEC31A|p.K616Nfs*18|1|0.26|ENSG00000138674|chr4:82856985-82856985|T/-|frameshift_variant	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	660.8263549804688	2	660.825818	1319.63708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.714	1	15.714	15.214	16.214	0								0	0	0	0.23991	1	4116	4116		42.338	17.819	1				4117	4281	2315	2331	4193	4193					-0.009950654905424017
ATFSTGERK	9	Unmodified	_ATFSTGERK_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.759033203125	2	498.759081	995.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.48	1	16.48	15.98	16.98	0								0	0	0	0.0124	1	3961	3961		107.01	46.036	1				4118	6733	2316	2332	4194	4194					0.005676954037653559
ATFSTGERK	9	Unmodified	_ATFSTGERK_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7590637207031	2	498.759081	995.503609	-0.68243	-0.00034037	0.93261	0.00046515	0.25018	0.00012478	498.7594688771058	16.67	0.35061	16.67	16.596	16.947	0					10	7	2	0	0	0	0.27249	1	4837	4837		52.937	3.4952	1	2533400			4119	6733	2316	2332	4195	4195					0.005676954037653559
ATFTGILGK	9	Unmodified	_ATFTGILGK_					0	0	0		nc|ENSG00000167995|O76090-3|BEST1;ENST00000534553.5_1_11:61722629-61730618:+|nuORF	nc|ENSG00000167995|O76090-3|BEST1	nc|ENSG00000167995|O76090-3|BEST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.7672119140625	2	454.26601	906.517468	-1.1676	-0.00053039	1.1023	0.00050076	-0.065219	-2.9627E-05	454.26652878328906	37.799	0.20221	37.799	37.702	37.904	0					15	11	2	0	0	0	0.078509	1	12763	12763		85.161	13.283	1	67918			4120	11635	2317	2333	4196	4196					0.06046972902856851
ATFTGILGK	9	Unmodified	_ATFTGILGK_					0	0	0		nc|ENSG00000167995|O76090-3|BEST1;ENST00000534553.5_1_11:61722629-61730618:+|nuORF	nc|ENSG00000167995|O76090-3|BEST1	nc|ENSG00000167995|O76090-3|BEST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.26617431640625	2	454.26601	906.517468	0.72119	0.00032761	-1.0771	-0.00048929	-0.35592	-0.00016168	454.2655793263264	38.016	0.32682	38.016	37.902	38.228	0					22	11	3	0	0	0	0.15163	1	14888	14888		67.494	12.717	1	534570			4121	11635	2317	2333	4197	4197					0.06046972902856851
ATFTGILGK	9	Unmodified	_ATFTGILGK_					0	0	0		nc|ENSG00000167995|O76090-3|BEST1;ENST00000534553.5_1_11:61722629-61730618:+|nuORF	nc|ENSG00000167995|O76090-3|BEST1	nc|ENSG00000167995|O76090-3|BEST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.26605224609375	2	454.26601	906.517468	0.87778	0.00039875	-1.0834	-0.00049214	-0.20559	-9.3394E-05	454.2655619507091	37.936	0.43027	37.936	37.739	38.17	0					17	9	3	0	0	0	0.021961	1	14882	14882		118.74	25.548	1	444920			4122	11635	2317	2333	4198	4198					0.06046972902856851
ATFTIQKKA	9	Unmodified	_ATFTIQKKA_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;ENST00000509849.5_1_5:37107706-37125531:-|nuORF	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53387451171875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.95	1	51.95	51.45	52.45	0								0	0	0	0.38123	1	16816	16816		17.468	2.1349	1				4123	7479	2318	2334	4199	4199					0.07810333339944009
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.76104736328125	2	492.761092	983.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.868	1	37.868	37.368	38.368	0								0	0	0	0.34845	1	12374	12374		25.574	17.343	1				4124	3724	2319	2335	4200	4200					0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7610778808594	2	492.761092	983.507631	0.78298	0.00038582	-1.359	-0.00066966	-0.57603	-0.00028384	492.76047028946743	38.159	0.24216	38.159	38.097	38.339	0					24	10	4	0	0	0	0.18416	1	14482	14482		63.534	13.509	1	279040			4125	3724	2319	2335	4201	4201					0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7611999511719	2	492.761092	983.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.192	1	38.192	37.692	38.692	0								0	0	0	0.25587	1	14501	14501		42.864	5.7052	1				4126	3724	2319	2335	4202	4202					0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7606506347656	2	492.761092	983.507631	-1.2661	-0.0006239	1.2072	0.00059485	-0.058952	-2.9049E-05	492.76153788750764	37.929	0.25343	37.929	37.843	38.097	0					33	14	3	0	0	0	0.42902	1	12794	12794		39.253	10.103	1	228710			4127	3724	2319	2335	4203	4203					0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7612609863281	2	492.761092	983.507631	0.60565	0.00029844	-0.86235	-0.00042493	-0.2567	-0.00012649	492.76062433568563	38.143	0.41098	38.143	38.039	38.45	0					33	14	3	0	0	0	0.02429	1	14929	14929		114.89	45.267	1	1553400			4128	3724	2319	2335	4204	4204					0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7607421875	2	492.761092	983.507631	-0.011132	-5.4855E-06	-0.26837	-0.00013224	-0.2795	-0.00013773	492.7608895401979	37.922	0.24881	37.922	37.823	38.071	0					24	12	3	0	0	0	0.30841	1	13552	13552		49.536	3.5638	1	214120			4129	3724	2319	2335	4205	4205					0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.76092529296875	2	492.761092	983.507631	0.85297	0.00042031	-0.98074	-0.00048327	-0.12777	-6.2959E-05	492.7605300111632	38.114	0.39155	38.114	37.974	38.366	0					18	8	3	0	0	0	0.012231	1	14928	14928		136.27	77.486	1	1024200			4130	3724	2319	2335	4206	4206					0.015217848974884873
ATFVNFRFGE	10	Unmodified	_ATFVNFRFGE_					0	0	0		ENST00000302243.11_1_16:70406206-70406689:+|nuORF	ENST00000302243.11_1_16:70406206-70406689:+|nuORF	ENST00000302243.11_1_16:70406206-70406689:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.5313720703125	3	396.532979	1186.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.992	1	13.992	13.492	14.492	0								0	0	0	0.41767	1	3380	3380		25.126	0	1				4131	8497	2320	2336	4207	4207					-0.008717561537650909
ATFYGPVKK	9	Unmodified	_ATFYGPVKK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	337.527099609375	3	337.527165	1009.55967	-0.68307	-0.00023056	0.64588	0.000218	-0.037196	-1.2555E-05	337.5273143238655	22.472	0.21172	22.472	22.393	22.604	0					14	6	3	0	0	0	0.57706	1	6630	6630		39.253	18.306	1	582830			4132	1172	2321	2337	4208	4208					0.05526948311239721
ATFYGPVKK	9	Unmodified	_ATFYGPVKK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.527099609375	3	337.527165	1009.55967	1.4853	0.00050132	-1.8986	-0.00064083	-0.41335	-0.00013952	337.5266495535418	22.648	0.4599	22.648	22.501	22.961	0					29	9	6	0	0	0	0.53083	1	7710	7710		44.377	22.597	1	2439400			4133	1172	2321	2337	4209	4209					0.05526948311239721
ATFYGPVKK	9	Unmodified	_ATFYGPVKK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.787109375	2	505.78711	1009.55967	-0.39239	-0.00019847	0.35489	0.0001795	-0.037505	-1.897E-05	505.78725564784844	22.684	0.36039	22.684	22.534	22.894	0					22	7	5	0	0	0	0.012915	1	7723	7723		134.81	38.62	1	3228600			4134	1172	2321	2337	4210	4210					0.05526948311239721
ATGAAGSRRRA	11	Unmodified	_ATGAAGSRRRA_					0	0	0		ENST00000503811.5_1_5:138629500-138629704:+|nuORF	ENST00000503811.5_1_5:138629500-138629704:+|nuORF	ENST00000503811.5_1_5:138629500-138629704:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7841186523438	2	537.29977	1072.58499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.059	1	13.059	12.559	13.559	0								0	0	0	0.41424	1	2542	2542		33.922	3.6039	1				4135	10167	2322	2338	4211	4211					0.051598158863725985
ATGAAGSRRRA	11	Unmodified	_ATGAAGSRRRA_					0	0	0		ENST00000503811.5_1_5:138629500-138629704:+|nuORF	ENST00000503811.5_1_5:138629500-138629704:+|nuORF	ENST00000503811.5_1_5:138629500-138629704:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.30126953125	2	537.29977	1072.58499	0.21358	0.00011475	2.5316	0.0013602	2.7452	0.001475	537.3007253522421	13.36	0.20114	13.36	13.216	13.417	0					10	5	3	0	0	0	0.48922	1	3039	3039		45.022	0.64502	1	311970			4136	10167	2322	2338	4212	4212					0.051598158863725985
ATGAATPKK	9	Unmodified	_ATGAATPKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7481994628906	2	422.747985	843.481417	0.86409	0.00036529	-0.94144	-0.00039799	-0.077356	-3.2702E-05	422.74754596410924	11.47	0.35864	11.47	11.158	11.517	0					24	12	3	0	0	0	0.037924	1	2273	2273		101.25	32.466	1	975920			4137	6080	2323	2339	4213	4213					0.053415157259905754
ATGALAAAVG	10	Unmodified	_ATGALAAAVG_					0	0	0			REV__ENST00000388752.7_1_6:43027369-43027471:-|nuORF	REV__ENST00000388752.7_1_6:43027369-43027471:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.22698974609375	2	401.226885	800.439217	0.85965	0.00034491	-0.63845	-0.00025616	0.2212	8.8753E-05	401.2266018039453	17.607	0.31931	17.607	17.483	17.802	0					14	6	3	0	0	0	0.33577	1	5289	5289		63.306	4.5243	1	922400	+		4138	18804	2324	2340	4214	4214					0.03101540317618401
ATGAPPRRQ	9	Unmodified	_ATGAPPRRQ_					0	0	0		ENST00000479644.1_1_6:31939773-31940810:+|nuORF;nc|ENSG00000204344|P49842-2|STK19;nc|ENSG00000204344|P49842-1|STK19	ENST00000479644.1_1_6:31939773-31940810:+|nuORF	ENST00000479644.1_1_6:31939773-31940810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2688293457031	2	477.267407	952.520262	3.4978	0.0016694	-0.21808	-0.00010408	3.2798	0.0015653	477.26732425629933	31.409	0.13945	31.409	31.33	31.469	0					8	5	2	0	0	0	0.47038	1	10390	10390		35.618	0.46626	1	83959			4139	9942	2325	2341	4215	4215					0.04210241080374999
ATGASTVVAP	10	Unmodified	_ATGASTVVAP_					0	0	0			REV__ENST00000248104.11_1_16:1416187-1416277:-|nuORF	REV__ENST00000248104.11_1_16:1416187-1416277:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2371520996094	2	437.23745	872.460347	-0.55898	-0.00024441	-0.0071647	-3.1327E-06	-0.56614	-0.00024754	437.23746874595594	35.441	0.17043	35.441	35.33	35.501	0					5	3	2	0	0	0	0.64178	1	13672	13672		29.15	2.4566	1	220360	+		4140	17953	2326	2342	4216	4216					0.019015056264720442
ATGDALLEK	9	Unmodified	_ATGDALLEK_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2507629394531	2	459.250557	916.486562	0.071098	3.2652E-05	-0.47398	-0.00021767	-0.40288	-0.00018502	459.2504769990337	26.257	0.26876	26.257	26.162	26.431	0					12	8	2	0	0	0	0.21419	1	7965	7965		59.931	1.7009	1	99357			4141	2545	2327	2343	4217	4217					0.024977747979505693
ATGDALLEK	9	Unmodified	_ATGDALLEK_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.25	2	459.250557	916.486562	-0.15638	-7.1818E-05	-0.73139	-0.00033589	-0.88777	-0.00040771	459.2502244631163	26.535	0.36794	26.535	26.326	26.694	0					16	7	3	0	0	0	0.0076184	1	9519	9519		146.79	45.185	1	483690			4142	2545	2327	2343	4218	4218					0.024977747979505693
ATGDALLEK	9	Unmodified	_ATGDALLEK_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2504577636719	2	459.250557	916.486562	-0.073231	-3.3631E-05	-0.26071	-0.00011973	-0.33394	-0.00015336	459.2504131374447	26.361	0.19678	26.361	26.259	26.456	0					6	4	2	0	0	0	0.13726	1	8487	8487		70.816	13.364	1	36313			4143	2545	2327	2343	4219	4219					0.024977747979505693
ATGDALLEK	9	Unmodified	_ATGDALLEK_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.25018310546875	2	459.250557	916.486562	-0.44577	-0.00020472	-0.14256	-6.547E-05	-0.58832	-0.00027019	459.2505301729255	26.476	0.42093	26.476	26.25	26.671	0					19	8	4	0	0	0	0.061298	1	9365	9365		91.265	13.001	1	649190			4144	2545	2327	2343	4220	4220					0.024977747979505693
ATGDFVTVK	9	Unmodified	_ATGDFVTVK_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH;AASDH|p.L440Gfs*15|1|0.11|ENSG00000157426|chr4:56354103-56354104|AA/-|frameshift_variant	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2530212402344	2	469.2531	936.491647	-0.12635	-5.9292E-05	-0.036876	-1.7304E-05	-0.16323	-7.6597E-05	469.2531659738001	28.737	0.21776	28.737	28.628	28.846	0					8	4	3	0	0	0	0.24334	1	10575	10575		56.434	5.0983	1	213890			4145	5217	2328	2344	4221	4221					0.0208607866057946
ATGDFVTVK	9	Unmodified	_ATGDFVTVK_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH;AASDH|p.L440Gfs*15|1|0.11|ENSG00000157426|chr4:56354103-56354104|AA/-|frameshift_variant	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2525634765625	2	469.2531	936.491647	-0.5224	-0.00024514	-0.62826	-0.00029481	-1.1507	-0.00053995	469.2527777608271	28.666	0.21781	28.666	28.558	28.775	0					7	4	2	0	0	0	0.38666	1	10428	10428		42.864	8.6917	1	307450			4146	5217	2328	2344	4222	4222					0.0208607866057946
ATGDIYAMK	9	Unmodified	_ATGDIYAMK_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-2|CIT	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2389831542969	2	485.239135	968.463718	-0.091637	-4.4466E-05	-0.0045467	-2.2062E-06	-0.096184	-4.6672E-05	485.2390406424016	28.687	0.2141	28.687	28.581	28.795	0					7	4	2	0	0	0	0.21263	1	10554	10554		60.118	16.001	1	241700			4147	3295	2329	2345	4223	4223					-0.02177567591161278
ATGDIYAMK	9	Unmodified	_ATGDIYAMK_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-2|CIT	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.23895263671875	2	485.239135	968.463718	-0.56939	-0.00027629	0.17612	8.5459E-05	-0.39328	-0.00019083	485.23923999904264	28.617	0.31554	28.617	28.511	28.826	0					13	6	3	0	0	0	0.01873	1	10399	10399		124.08	44.368	1	577540			4148	3295	2329	2345	4224	4224					-0.02177567591161278
ATGDLATSR	9	Unmodified	_ATGDLATSR_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;ENSG00000167642|ENST00000301244|SPINT2;nc|ENSG00000167642|O43291-2|SPINT2	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.23016357421875	2	446.230156	890.445759	0.15598	6.9601E-05	0.24767	0.00011052	0.40364	0.00018012	446.2301846298533	18.234	0.24965	18.234	18.133	18.383	0					18	10	3	0	0	0	0.0059092	1	4495	4495		154.12	47.111	1	215710			4149	6011	2330	2346	4225	4225					-0.0038456652165450578
ATGDLATSR	9	Unmodified	_ATGDLATSR_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;ENSG00000167642|ENST00000301244|SPINT2;nc|ENSG00000167642|O43291-2|SPINT2	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.2297668457031	2	446.230156	890.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.217	1	18.217	17.717	18.717	0								0	0	0	0.069826	1	4501	4501		80.455	21.673	1				4150	6011	2330	2346	4226	4226					-0.0038456652165450578
ATGDLATSR	9	Unmodified	_ATGDLATSR_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;ENSG00000167642|ENST00000301244|SPINT2;nc|ENSG00000167642|O43291-2|SPINT2	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2301025390625	2	446.230156	890.445759	-0.40767	-0.00018191	-0.11599	-5.1758E-05	-0.52366	-0.00023367	446.2301660089857	18.552	0.2216	18.552	18.461	18.683	0					10	5	3	0	0	0	0.017421	1	5439	5439		126.24	46.792	1	570070			4151	6011	2330	2346	4227	4227					-0.0038456652165450578
ATGDLATSR	9	Unmodified	_ATGDLATSR_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;ENSG00000167642|ENST00000301244|SPINT2;nc|ENSG00000167642|O43291-2|SPINT2	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.2298889160156	2	446.230156	890.445759	-1.1675	-0.00052098	0.63719	0.00028434	-0.53032	-0.00023664	446.23044370188455	18.235	0.29807	18.235	18.15	18.448	0					20	11	3	0	0	0	0.017421	1	4712	4712		126.24	41.327	1	543330			4152	6011	2330	2346	4228	4228					-0.0038456652165450578
ATGDLATSR	9	Unmodified	_ATGDLATSR_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;ENSG00000167642|ENST00000301244|SPINT2;nc|ENSG00000167642|O43291-2|SPINT2	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.23040771484375	2	446.230156	890.445759	-0.44126	-0.0001969	0.57318	0.00025577	0.13192	5.8866E-05	446.23040750484097	18.307	0.1798	18.307	18.235	18.415	0					13	5	3	0	0	0	0.0030642	1	4742	4742		168.26	72.068	1	311070			4153	6011	2330	2346	4229	4229					-0.0038456652165450578
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(94)SGLLK	0	0	1		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.75518798828125	2	504.755149	1007.49575	0.68022	0.00034334	-0.85533	-0.00043173	-0.17511	-8.839E-05	504.7548136623717	24.799	0.51267	24.799	24.684	25.197	0					33	15	4	0	0	0	0.11048	1	7366	7366		93.598	11.357	1	622960			4154	3518	2331	2347	4230	4230		152			-0.007701999079927191
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(130)SGLLK	0	0	1		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7551574707031	2	504.755149	1007.49575	0.78889	0.0003982	-1.056	-0.00053303	-0.26713	-0.00013484	504.7547209103562	25.107	0.40711	25.107	24.98	25.388	0					33	9	4	0	0	0	0.012989	1	8527	8527		131.62	41.015	1	3830300			4155	3518	2331	2347	4231	4231		152			-0.007701999079927191
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(110)SGLLK	0	0	1		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.75518798828125	2	504.755149	1007.49575	0.045567	2.3E-05	-0.2662	-0.00013436	-0.22063	-0.00011136	504.7550288284916	24.884	0.37538	24.884	24.784	25.159	0					16	8	3	0	0	0	0.049549	1	7818	7818		109.48	10.103	1	393450			4156	3518	2331	2347	4232	4232		152			-0.007701999079927191
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(83)SGLLK	0	0	1		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7555236816406	2	504.755149	1007.49575	0.11548	5.8288E-05	-0.54815	-0.00027668	-0.43268	-0.0002184	504.75491006567864	24.867	0.45134	24.867	24.771	25.222	0					22	10	3	0	0	0	0.17315	1	7812	7812		82.75	29.814	1	501690			4157	3518	2331	2347	4233	4233		152			-0.007701999079927191
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(150)SGLLK	0	0	1		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.75482177734375	2	504.755149	1007.49575	-0.34642	-0.00017486	-0.26648	-0.00013451	-0.6129	-0.00030937	504.7551708137151	25.019	0.51185	25.019	24.869	25.381	0					29	10	4	0	0	0	0.0090663	1	8693	8693		146.79	53.59	1	3323600			4158	3518	2331	2347	4234	4234		152			-0.007701999079927191
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.75762939453125	2	496.757692	991.500831	0.12723	6.3202E-05	-0.48216	-0.00023952	-0.35493	-0.00017632	496.75780943392175	34.589	0.66286	34.589	34.443	35.106	0					91	28	6	0	0	0	0.026898	2	11292	11292;11419		120.31	45.263	1	11583000			4159	3518	2331	2348	4235;4236	4235					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7579345703125	2	496.757692	991.500831	0.71619	0.00035577	-1.1991	-0.00059568	-0.48293	-0.0002399	496.75759460816204	34.88	1.1107	34.88	34.573	35.683	0					100	29	7	0	0	0	0.00059424	2	13011	13011;13188		186.41	81.664	1	59990000			4160	3518	2331	2348	4237;4238	4237					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.757568359375	2	496.757692	991.500831	-0.33436	-0.0001661	-0.16355	-8.1245E-05	-0.49791	-0.00024734	496.7578088944765	34.845	0.35394	34.845	34.761	35.115	0					14	9	2	0	0	0	0.39827	1	13023	13023		56.434	0.92959	1	194850			4161	3518	2331	2348	4239	4239					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7574462890625	2	496.757692	991.500831	-1.169	-0.0005807	0.5147	0.00025568	-0.65428	-0.00032502	496.75818135635376	34.697	0.52562	34.697	34.519	35.044	0					92	23	6	0	0	0	0.010724	2	11681	11681;11805		140.11	57.872	1	11646000			4162	3518	2331	2348	4240;4241	4240					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.75750732421875	2	496.757692	991.500831	0.76423	0.00037964	-1.2342	-0.00061308	-0.46992	-0.00023344	496.75763913157357	34.866	1.2902	34.866	34.568	35.858	0					108	36	7	0	0	0	0.011557	2	13448	13448;13609		136.99	38.36	1	62168000			4163	3518	2331	2348	4242;4243	4242					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7579040527344	2	496.757692	991.500831	-0.068244	-3.3901E-05	-0.3192	-0.00015857	-0.38744	-0.00019247	496.75760770187316	34.631	0.4064	34.631	34.503	34.909	0					34	13	3	0	0	0	0.0054485	1	12264	12264		164.46	57.448	1	3959100			4164	3518	2331	2348	4244	4244					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7574768066406	2	496.757692	991.500831	0.15087	7.4948E-05	-0.90955	-0.00045182	-0.75867	-0.00037688	496.75753452045296	34.648	0.85073	34.648	34.376	35.227	0					79	27	6	0	0	0	0.0087281	1	12256	12256		148.69	60.994	1	15838000			4165	3518	2331	2348	4245	4245					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7571716308594	2	496.757692	991.500831	-2.3307	-0.0011578	1.4653	0.00072789	-0.86539	-0.00042989	496.758586326636	34.642	0.50504	34.642	34.52	35.025	0					52	16	5	0	0	0	0.18316	1	12250	12250		81.525	29.997	1	3626900			4166	3518	2331	2348	4246	4246					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.758544921875	2	496.757692	991.500831	-0.69675	-0.00034612	0.59542	0.00029578	-0.10133	-5.0337E-05	496.7586891411825	34.833	1.019	34.833	34.635	35.654	0					71	20	8	0	0	0	0.002607	1	13379	13379		173.39	68.645	1	30752000			4167	3518	2331	2348	4247	4247					0.004741039546161119
ATGDMSGLLK	10	Unmodified	_ATGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.75823974609375	2	496.757692	991.500831	0.98253	0.00048808	-1.3742	-0.00068266	-0.39169	-0.00019458	496.7575586232436	34.822	1.3582	34.822	34.474	35.833	0					89	27	7	0	0	0	4.3945E-06	2	13371	13371;13544		199.89	89.771	1	61685000			4168	3518	2331	2348	4248;4249	4248					0.004741039546161119
ATGDVALLR	9	Unmodified	_ATGDVALLR_					0	0	0		ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2666931152344	2	458.266542	914.51853	0.059323	2.7186E-05	-0.60182	-0.00027579	-0.5425	-0.00024861	458.26634949715185	31.318	0.27003	31.318	31.227	31.497	0					26	11	3	0	0	0	0.023928	1	10047	10047		115.49	41.239	1	442030			4169	2049	2332	2349	4250	4250					0.05785187271771974
ATGDVALLR	9	Unmodified	_ATGDVALLR_					0	0	0		ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2660217285156	2	458.266542	914.51853	-0.98122	-0.00044966	0.34131	0.00015641	-0.63991	-0.00029325	458.266699837818	31.392	0.31572	31.392	31.275	31.591	0					28	12	3	0	0	0	0.02953	1	10376	10376		109.48	24.563	1	536260			4170	2049	2332	2349	4251	4251					0.05785187271771974
ATGDVALLR	9	Unmodified	_ATGDVALLR_					0	0	0		ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2662658691406	2	458.266542	914.51853	0.12825	5.8775E-05	-0.97909	-0.00044868	-0.85083	-0.00038991	458.2661076928163	31.391	0.29944	31.391	31.266	31.566	0					16	7	3	0	0	0	0.0049871	1	10791	10791		158.07	49.987	1	481300			4171	2049	2332	2349	4252	4252					0.05785187271771974
ATGDVALLR	9	Unmodified	_ATGDVALLR_					0	0	0		ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2662658691406	2	458.266542	914.51853	-0.43994	-0.00020161	-0.17645	-8.086E-05	-0.61639	-0.00028247	458.2665268363758	31.578	0.51044	31.578	31.275	31.786	0					24	10	4	0	0	0	0.0025054	1	11829	11829		171.53	45.718	1	1803100			4172	2049	2332	2349	4253	4253					0.05785187271771974
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.19744873046875	3	335.197596	1002.57096	0.37199	0.00012469	-0.18202	-6.1011E-05	0.18998	6.3681E-05	335.19750284045074	17.281	0.10415	17.281	17.238	17.342	0					5	3	2	0	0	0	0.22691	1	4095	4095		76.17	28.512	1	98972			4173	752	2333	2350	4254	4254					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7944641113281	2	502.292756	1002.57096	-0.044894	-2.255E-05	-0.11966	-6.0105E-05	-0.16456	-8.2655E-05	502.2926491506967	17.295	0.16482	17.295	17.196	17.361	0					12	5	3	0	0	0	0.078327	1	4079	4079		88.177	3.2614	1	1598200			4174	752	2333	2350	4255	4255					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.1975402832031	3	335.197596	1002.57096	0.65604	0.0002199	-0.81248	-0.00027234	-0.15644	-5.244E-05	335.19732818797416	17.582	0.12905	17.582	17.539	17.668	0					7	3	3	0	0	0	0.36647	1	4998	4998		59.931	12.703	1	1399300			4175	752	2333	2350	4256	4256					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2927551269531	2	502.292756	1002.57096	-0.072116	-3.6223E-05	-0.059254	-2.9763E-05	-0.13137	-6.5986E-05	502.2926805852398	17.616	0.44462	17.616	17.331	17.776	0					21	11	3	0	0	0	0.0026567	1	4988	4988		152.06	74.743	1	7786400			4176	752	2333	2350	4257	4257					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.1972961425781	3	335.197596	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.338	1	17.338	16.838	17.838	0								0	0	0	0.27575	1	4328	4328		54.722	16.911	1				4177	752	2333	2350	4258	4258					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.292724609375	2	502.292756	1002.57096	-0.95246	-0.00047841	1.1	0.00055254	0.14757	7.4125E-05	502.29332729917365	17.331	0.15435	17.331	17.235	17.39	0					11	5	3	0	0	0	0.041183	1	4330	4330		101.25	26.998	1	511470			4178	752	2333	2350	4259	4259					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2928161621094	2	502.292756	1002.57096	-0.53413	-0.00026829	0.32648	0.00016399	-0.20765	-0.0001043	502.2928833426627	17.583	0.45094	17.583	17.334	17.785	0					15	9	4	0	0	0	0.00070286	1	5230	5230		177.3	67.185	1	2751900			4179	752	2333	2350	4260	4260					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	335.1976318359375	3	335.197596	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.375	1	17.375	16.875	17.875	0								0	0	0	0.27575	1	4318	4318		54.722	16.911	1				4180	752	2333	2350	4261	4261					0.06977725614717656
ATGESIAVKK	10	Unmodified	_ATGESIAVKK_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.19757080078125	3	335.197596	1002.57096	-0.012222	-4.0967E-06	-0.13549	-4.5415E-05	-0.14771	-4.9512E-05	335.19757868522373	17.539	0.16783	17.539	17.43	17.598	0					6	3	2	0	0	0	0.57211	1	5090	5090		37.508	11.445	1	1102400			4181	752	2333	2350	4262	4262					0.06977725614717656
ATGFIWSRYS	10	Unmodified	_ATGFIWSRYS_					0	0	0		ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.5315856933594	3	396.532979	1186.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.04	1	14.04	13.54	14.54	0								0	0	0	0.40797	1	3334	3334		28.081	3.8497	1				4182	4528	2334	2351	4263	4263					-0.008717561537650909
ATGFLEQLK	9	Unmodified	_ATGFLEQLK_					0	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000417919.5_3_7:116593594-116738680:+|nuORF	nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7821044921875	2	503.782025	1005.5495	1.0165	0.00051211	-2.9223	-0.0014722	-1.9057	-0.00096007	503.7814120012981	39.463	0.37355	39.463	39.306	39.679	0					21	13	3	0	0	0	0.18416	1	15503	15503		63.534	8.7575	1	222790			4183	947	2335	2352	4264	4264					0.046943405859906306
ATGFLEQLK	9	Unmodified	_ATGFLEQLK_					0	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000417919.5_3_7:116593594-116738680:+|nuORF	nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7812805175781	2	503.782025	1005.5495	1.1913	0.00060014	-4.0757	-0.0020533	-2.8844	-0.0014531	503.78119266724894	39.451	0.36977	39.451	39.157	39.526	0					14	8	3	0	0	0	0.014413	1	15569	15569		131.62	45.754	1	301320			4184	947	2335	2352	4265	4265					0.046943405859906306
ATGGDITRNK	10	Unmodified	_ATGGDITRNK_					0	0	0		ENST00000426620.5_1_3:38234779-38271948:+|nuORF;ENSG00000172939|ENST00000311806|OXSR1	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7753295898438	2	516.775262	1031.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.787	1	14.787	14.287	15.287	0								0	0	0	0.01889	1	3678	3678		120.31	29.936	1				4185	6397	2336	2353	4266	4266					0.021464828067337294
ATGGDITRNK	10	Unmodified	_ATGGDITRNK_					0	0	0		ENST00000426620.5_1_3:38234779-38271948:+|nuORF;ENSG00000172939|ENST00000311806|OXSR1	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7755126953125	2	516.775262	1031.53597	0.11114	5.7434E-05	-0.66373	-0.000343	-0.55259	-0.00028557	516.7748056551219	14.507	0.054323	14.507	14.456	14.51	0					4	2	2	0	0	0	0.65895	1	3148	3148		27.047	4.4677	1	43791			4186	6397	2336	2353	4267	4267					0.021464828067337294
ATGGLEGKMK	10	Unmodified	_ATGGLEGKMK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2660827636719	2	496.265684	990.516816	-0.060632	-3.0089E-05	-0.32702	-0.00016229	-0.38765	-0.00019238	496.2655300889871	18.351	0.19424	18.351	18.279	18.473	0					19	8	4	0	0	0	0.041742	1	4539	4539		112.11	40.23	1	375450			4187	3401	2337	2354	4268	4268					0.021178101914983927
ATGGLEGKMK	10	Unmodified	_ATGGLEGKMK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2659606933594	2	496.265684	990.516816	-0.35263	-0.000175	0.52436	0.00026022	0.17173	8.5226E-05	496.2660733473461	18.679	0.25527	18.679	18.547	18.803	0					17	6	4	0	0	0	0.0087281	1	5495	5495		148.69	63.529	1	2671300			4188	3401	2337	2354	4269	4269					0.021178101914983927
ATGGLEGKMK	10	Unmodified	_ATGGLEGKMK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2651062011719	2	496.265684	990.516816	-1.4504	-0.00071976	0.69914	0.00034696	-0.75122	-0.00037281	496.26588227593186	18.356	0.13836	18.356	18.274	18.413	0					9	5	2	0	0	0	0.073361	1	4771	4771		101.46	35.994	1	559920			4189	3401	2337	2354	4270	4270					0.021178101914983927
ATGGLEGKMK	10	Unmodified	_ATGGLEGKMK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.265625	2	496.265684	990.516816	-0.76538	-0.00037983	0.4102	0.00020357	-0.35518	-0.00017626	496.265969453582	18.586	0.31665	18.586	18.377	18.694	0					11	6	3	0	0	0	0.00099721	1	5739	5739		182.39	83.809	1	3169700			4190	3401	2337	2354	4271	4271					0.021178101914983927
ATGGLEGKMK	10	Unmodified	_ATGGLEGKMK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.1795349121094	3	331.179548	990.516816	-0.0031415	-1.0404E-06	-0.19301	-6.3922E-05	-0.19615	-6.4962E-05	331.17953315555036	18.627	0.11448	18.627	18.522	18.636	0					8	2	4	0	0	0	0.47859	1	5601	5601		59.931	22.119	1	441910			4191	3401	2337	2354	4272	4272					0.021178101914983927
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.7185974121094	2	424.71837	847.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.804	1	17.804	17.304	18.304	0								0	0	0	0.22284	1	4318	4318		47.657	12.039	1				4192	4131	2338	2355	4273	4273					-0.007627035598375187
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.7181091308594	2	424.71837	847.422187	0.32444	0.0001378	-1.1112	-0.00047195	-0.78677	-0.00033416	424.7179337833489	17.805	0.12071	17.805	17.731	17.852	0					5	3	2	0	0	0	0.13267	1	4312	4312		71.877	31.305	1	95140			4193	4131	2338	2355	4274	4274					-0.007627035598375187
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.7186279296875	2	424.71837	847.422187	0.33191	0.00014097	0.59705	0.00025358	0.92896	0.00039455	424.7185725947328	18.106	0.18941	18.106	18.009	18.198	0					9	4	3	0	0	0	0.0040894	1	5244	5244		162.25	69.057	1	253860			4194	4131	2338	2355	4275	4275					-0.007627035598375187
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.7181396484375	2	424.71837	847.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.119	1	18.119	17.619	18.619	0								0	0	0	0.00097936	1	5241	5241		127.46	45.221	1				4195	4131	2338	2355	4276	4276					-0.007627035598375187
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.7185974121094	2	424.71837	847.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.825	1	17.825	17.325	18.325	0								0	0	0	0.029117	1	4545	4545		96.19	35.218	1				4196	4131	2338	2355	4277	4277					-0.007627035598375187
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.7181396484375	2	424.71837	847.422187	-0.33649	-0.00014291	0.45459	0.00019307	0.1181	5.016E-05	424.7182546992448	18.066	0.31946	18.066	17.853	18.173	0					18	6	4	0	0	0	0.013878	1	5488	5488		132.76	53.045	1	910450			4197	4131	2338	2355	4278	4278					-0.007627035598375187
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.7180480957031	2	424.71837	847.422187	0.14886	6.3224E-05	0.080895	3.4358E-05	0.22976	9.7582E-05	424.718377084992	17.884	0.096939	17.884	17.794	17.891	0					4	2	2	0	0	0	0.0792	1	4545	4545		84.916	27.104	1	127740			4198	4131	2338	2355	4279	4279					-0.007627035598375187
ATGGMANVK	9	Unmodified	_ATGGMANVK_					0	0	0		XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant;ENSG00000136936|ENST00000375128|XPA	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	XPA|p.A65T|1|0.24|ENSG00000136936|chr9:97693739-97693739|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.7181091308594	2	424.71837	847.422187	-0.37294	-0.0001584	0.48142	0.00020447	0.10847	4.607E-05	424.71822999367765	18.039	0.30729	18.039	17.834	18.142	0					14	6	4	0	0	0	0.013878	1	5330	5330		132.76	63.13	1	891160			4199	4131	2338	2355	4280	4280					-0.007627035598375187
ATGGSLLSK	9	Unmodified	_ATGGSLLSK_					0	0	0		nc|ENSG00000164542|Q8NCT3-5|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.23992919921875	2	417.239993	832.465432	1.0558	0.00044054	-1.1877	-0.00049554	-0.13181	-5.4997E-05	417.2394778886831	23.137	0.35509	23.137	22.969	23.324	0					13	8	3	0	0	0	0.076532	1	7613	7613		85.862	15.046	1	480130			4200	5703	2339	2356	4281	4281					0.04249809489101608
ATGGSLLSK	9	Unmodified	_ATGGSLLSK_					0	0	0		nc|ENSG00000164542|Q8NCT3-5|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.23968505859375	2	417.239993	832.465432	1.055	0.00044017	-1.6629	-0.00069383	-0.60795	-0.00025366	417.2393548709703	23.03	0.76101	23.03	22.922	23.683	0					18	15	2	0	0	0	0.063171	1	7763	7763		90.601	25.135	1	794990			4201	5703	2339	2356	4282	4282					0.04249809489101608
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.2499084472656	2	440.25036	878.486168	0.28296	0.00012457	-1.0154	-0.00044705	-0.73248	-0.00032247	440.2498741267006	25.229	0.25278	25.229	25.119	25.372	0					12	7	3	0	0	0	0.15163	1	7560	7560		67.494	4.1874	1	284750			4202	7541	2340	2357	4283	4283					0.04206399868758126
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.25030517578125	2	440.25036	878.486168	-1.0438	-0.00045955	0.83714	0.00036855	-0.20669	-9.0995E-05	440.2506237583853	25.275	0.24623	25.275	25.189	25.435	0					17	8	3	0	0	0	0.15163	1	7828	7828		67.494	3.2864	1	272270			4203	7541	2340	2357	4284	4284					0.04206399868758126
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.2498779296875	2	440.25036	878.486168	-0.33996	-0.00014967	-0.74827	-0.00032943	-1.0882	-0.0004791	440.25003882331174	25.511	0.2606	25.511	25.409	25.67	0					7	5	2	0	0	0	0.19605	1	9076	9076		62.107	3.3255	1	383360			4204	7541	2340	2357	4285	4285					0.04206399868758126
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.25018310546875	2	440.25036	878.486168	0.57749	0.00025424	-0.58798	-0.00025886	-0.010492	-4.6191E-06	440.2501473297125	25.5	0.36245	25.5	25.392	25.755	0					16	7	3	0	0	0	0.0012031	1	9069	9069		180.93	60.305	1	2345200			4205	7541	2340	2357	4286	4286					0.04206399868758126
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2498779296875	2	440.25036	878.486168	0.35025	0.0001542	-1.0737	-0.00047268	-0.7234	-0.00031848	440.2498208072114	25.318	0.19161	25.318	25.222	25.414	0					7	4	2	0	0	0	0.056004	1	8041	8041		93.143	24.356	1	132650			4206	7541	2340	2357	4287	4287					0.04206399868758126
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2502746582031	2	440.25036	878.486168	-0.56982	-0.00025086	0.037861	1.6668E-05	-0.53196	-0.00023419	440.2503346774906	25.348	0.19135	25.348	25.252	25.443	0					9	4	3	0	0	0	0.032052	1	8038	8038		107.01	21.648	1	319220			4207	7541	2340	2357	4288	4288					0.04206399868758126
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.25006103515625	2	440.25036	878.486168	-0.54984	-0.00024207	0.13894	6.1168E-05	-0.4109	-0.0001809	440.2503665132531	25.472	0.36903	25.472	25.315	25.684	0					17	7	4	0	0	0	0.0025054	1	8910	8910		171.53	66.785	1	1380900			4208	7541	2340	2357	4289	4289					0.04206399868758126
ATGGTFVVK	9	Unmodified	_ATGGTFVVK_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.25	2	440.25036	878.486168	0.70447	0.00031014	-1.331	-0.00058598	-0.62653	-0.00027583	440.2497869413696	25.457	0.50156	25.457	25.347	25.849	0					20	8	4	0	0	0	0.00073892	1	8927	8927		185.55	72.138	1	2544200			4209	7541	2340	2357	4290	4290					0.04206399868758126
ATGGTFVVKSL	11	Unmodified	_ATGGTFVVKSL_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.8118286132812	2	540.308406	1078.60226	2.1521	0.0011628	-0.75493	-0.00040789	1.3972	0.00075493	540.3078421220181	34.44	0.11949	34.44	34.36	34.48	0					8	4	2	0	0	0	0.75295	1	12190	12190		22.58	2.5829	1	50328			4210	7541	2341	2358	4291	4291					0.0661029864882039
ATGGWSSSK	9	Unmodified	_ATGGWSSSK_					0	0	0		BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant;nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.7115173339844	2	440.711599	879.408646	0.28995	0.00012779	-0.75915	-0.00033457	-0.46919	-0.00020678	440.7113409439222	17.747	0.15929	17.747	17.693	17.852	0					6	4	2	0	0	0	0.10915	1	4299	4299		77.318	10.888	1	84827			4211	273	2342	2359	4292	4292					-0.03588238067425209
ATGGWSSSK	9	Unmodified	_ATGGWSSSK_					0	0	0		BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant;nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7113952636719	2	440.711599	879.408646	0.56347	0.00024833	-0.63619	-0.00028038	-0.072718	-3.2048E-05	440.71124341065865	18.041	0.27853	18.041	17.942	18.221	0					12	6	3	0	0	0	0.061298	1	5199	5199		91.265	30.293	1	537250			4212	273	2342	2359	4293	4293					-0.03588238067425209
ATGGWSSSK	9	Unmodified	_ATGGWSSSK_					0	0	0		BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant;nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7112731933594	2	440.711599	879.408646	-1.0593	-0.00046684	0.64692	0.00028511	-0.41236	-0.00018173	440.71182291405967	17.756	0.2677	17.756	17.657	17.924	0					10	7	2	0	0	0	0.095583	2	4514	4514;4523		80.455	13.381	1	118340			4213	273	2342	2359	4294;4295	4294					-0.03588238067425209
ATGGWSSSK	9	Unmodified	_ATGGWSSSK_					0	0	0		BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant;nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.71136474609375	2	440.711599	879.408646	0.55485	0.00024453	-0.9668	-0.00042608	-0.41195	-0.00018155	440.7110760331382	17.996	0.2685	17.996	17.887	18.156	0					13	5	3	0	0	0	0.054723	1	5460	5460		93.598	44.156	1	924440			4214	273	2342	2359	4296	4296					-0.03588238067425209
ATGGWSSSK	9	Unmodified	_ATGGWSSSK_					0	0	0		BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant;nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	BAHD1|p.P431Lfs*16|1|0.42|ENSG00000140320|chr15:40459754-40459754|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.7113037109375	2	440.711599	879.408646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.831	1	17.831	17.331	18.331	0								0	0	0	0.25587	1	4528	4528		42.864	16.171	1				4215	273	2342	2359	4297	4297					-0.03588238067425209
ATGHLVSS	8	Unmodified	_ATGHLVSS_					0	0	0			REV__ENST00000517600.5_1_8:21924352-21927027:+|nuORF	REV__ENST00000517600.5_1_8:21924352-21927027:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	386.20501708984375	2	386.20341	770.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.882	1	31.882	31.382	32.382	0								0	0	0	1.7419	1	11027	11027		26.796	8.4717	1		+		4216	19027	2343	2360	4298	4298					-0.002113192335173153
ATGIEKIW	8	Unmodified	_ATGIEKIW_					0	0	0			REV__PLEKHA2|p.A295T|2|0.21|ENSG00000169499|chr8:38968637-38968637|G/A|missense_variant	REV__PLEKHA2|p.A295T|2|0.21|ENSG00000169499|chr8:38968637-38968637|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.25958251953125	2	459.258185	916.501818	0.87926	0.00040381	2.839	0.0013038	3.7183	0.0017076	459.2592951804864	34.148	0.25606	34.148	33.989	34.245	0					19	5	5	0	0	0	0.28427	1	13067	13067		87.754	8.3033	1	691020	+		4217	21384	2344	2361	4299	4299					0.0402268638579244
ATGIFQEAL	9	Unmodified	_ATGIFQEAL_					0	0	0		ENST00000481948.1_1_16:88104968-88110264:+|nuORF	ENST00000481948.1_1_16:88104968-88110264:+|nuORF	ENST00000481948.1_1_16:88104968-88110264:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2538757324219	2	475.2531	948.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.569	1	34.569	34.069	35.069	0								0	0	0	0.2591	1	11307	11307		42.396	1.618	1				4218	9964	2345	2362	4300	4300					0.01534078660574778
ATGIILPAR	9	Unmodified	_ATGIILPAR_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.7881774902344	2	456.287277	910.560001	-1.0758	-0.00049088	0.12761	5.8225E-05	-0.94822	-0.00043266	456.28753008821025	32.247	0.25181	32.247	32.072	32.324	0					17	11	2	0	0	0	0.30951	1	10725	10725		49.442	12.282	1	86544			4219	5623	2346	2363	4301	4301					0.10114368031076992
ATGIILPAR	9	Unmodified	_ATGIILPAR_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.2870788574219	2	456.287277	910.560001	-0.14268	-6.5103E-05	-0.70121	-0.00031995	-0.84389	-0.00038506	456.2869302774854	32.421	0.3853	32.421	32.242	32.627	0					19	9	3	0	0	0	0.30951	1	12292	12292		49.442	13.823	1	186870			4220	5623	2346	2363	4302	4302					0.10114368031076992
ATGIILPAR	9	Unmodified	_ATGIILPAR_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.28729248046875	2	456.287277	910.560001	-0.43051	-0.00019644	0.45514	0.00020768	0.024628	1.1237E-05	456.28749778294855	32.43	0.47032	32.43	32.17	32.64	0					20	9	3	0	0	0	0.1115	1	12191	12191		76.774	17.992	1	658640			4221	5623	2346	2363	4303	4303					0.10114368031076992
ATGILGAVFK	10	Unmodified	_ATGILGAVFK_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7951965332031	2	488.794935	975.575317	-0.26636	-0.00013019	0.085803	4.194E-05	-0.18056	-8.8255E-05	488.7948728717524	46.703	0.14686	46.703	46.638	46.785	0					15	9	2	0	0	0	0.62235	1	14378	14378		31.53	7.3271	1	115380			4222	3501	2347	2364	4304	4304					0.0865523482827939
ATGILGAVFK	10	Unmodified	_ATGILGAVFK_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.79486083984375	2	488.794935	975.575317	-0.40935	-0.00020009	0.074161	3.6249E-05	-0.33519	-0.00016384	488.7949650535612	47.017	0.2929	47.017	46.898	47.191	0					38	17	3	0	0	0	0.21754	1	17289	17289		77.318	24.381	1	406120			4223	3501	2347	2364	4305	4305					0.0865523482827939
ATGILGAVFK	10	Unmodified	_ATGILGAVFK_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7947692871094	2	488.794935	975.575317	-0.44792	-0.00021894	0.748	0.00036562	0.30008	0.00014668	488.7952628330461	46.784	0.14922	46.784	46.718	46.867	0					13	9	2	0	0	0	0.49411	1	14906	14906		45.972	14.017	1	111940			4224	3501	2347	2364	4306	4306					0.0865523482827939
ATGILGAVFK	10	Unmodified	_ATGILGAVFK_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7945861816406	2	488.794935	975.575317	-0.17858	-8.7288E-05	0.75833	0.00037067	0.57975	0.00028338	488.7952967770876	46.778	0.15572	46.778	46.701	46.857	0					13	9	2	0	0	0	0.47859	1	15742	15742		47.657	12.039	1	71348			4225	3501	2347	2364	4307	4307					0.0865523482827939
ATGKLFAVK	9	Unmodified	_ATGKLFAVK_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7894287109375	2	467.789653	933.564752	0.039377	1.842E-05	-0.48499	-0.00022687	-0.44561	-0.00020845	467.7892804162128	24.721	0.22223	24.721	24.616	24.838	0					12	6	3	0	0	0	0.12834	1	7331	7331		72.879	21.544	1	241360			4226	6938	2348	2365	4308	4308					0.09531252173837856
ATGKLFAVK	9	Unmodified	_ATGKLFAVK_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7894592285156	2	467.789653	933.564752	0.33395	0.00015622	-1.4911	-0.00069751	-1.1571	-0.0005413	467.7888423750614	25.022	0.52341	25.022	24.902	25.426	0					27	12	4	0	0	0	0.02953	1	8489	8489		109.48	56.542	1	1994500			4227	6938	2348	2365	4309	4309					0.09531252173837856
ATGKLFAVK	9	Unmodified	_ATGKLFAVK_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7893981933594	2	467.789653	933.564752	-0.13021	-6.0912E-05	-0.43387	-0.00020296	-0.56409	-0.00026387	467.7893965416371	24.981	0.31425	24.981	24.857	25.171	0					17	6	4	0	0	0	0.095583	1	8811	8811		80.455	23.734	1	1167000			4228	6938	2348	2365	4310	4310					0.09531252173837856
ATGKLFAVK	9	Unmodified	_ATGKLFAVK_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7898254394531	2	467.789653	933.564752	-0.19883	-9.3012E-05	-0.11006	-5.1483E-05	-0.30889	-0.00014449	467.7896503211865	24.797	0.15147	24.797	24.741	24.892	0					8	3	3	0	0	0	0.078509	1	7795	7795		85.161	30.385	1	200330			4229	6938	2348	2365	4311	4311					0.09531252173837856
ATGKLFAVK	9	Unmodified	_ATGKLFAVK_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.78936767578125	2	467.789653	933.564752	-0.50982	-0.00023849	-0.12203	-5.7084E-05	-0.63184	-0.00029557	467.7896315904533	24.921	0.46017	24.921	24.821	25.281	0					15	9	2	0	0	0	0.026538	1	8668	8668		112.41	48.204	1	2455700			4230	6938	2348	2365	4312	4312					0.09531252173837856
ATGKLTKAK	9	Unmodified	_ATGKLTKAK_					0	0	0		ENSG00000101940|ENST00000376729|WDR13;nc|ENSG00000101940|Q9H1Z4-2|WDR13;WDR13|p.R345H|2|0.72|ENSG00000101940|chrX:48602086-48602086|G/A|missense_variant	ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2920837402344	2	459.292559	916.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.138	1	12.138	11.638	12.638	0								0	0	0	0.38123	1	2514	2514		16.473	3.514	1				4231	2142	2349	2366	4313	4313					0.10894350685509835
ATGKRFYFK	9	Unmodified	_ATGKRFYFK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA1|p.N76_V77insLLF|1|0.06|ENSG00000016490|chr1:86473481-86473482|-/CTTGTTATT|inframe_insertion	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	373.2098083496094	3	373.209948	1116.60801	0.050416	1.8816E-05	-0.47004	-0.00017542	-0.41963	-0.00015661	373.20987303194283	22.021	1.2796	22.021	21.867	23.146	0					70	39	3	0	0	0	0.39215	1	6164	6164		49.536	9.4779	1	2918800			4232	1085	2350	2367	4314	4314					0.054374419511077576
ATGKRFYFK	9	Unmodified	_ATGKRFYFK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA1|p.N76_V77insLLF|1|0.06|ENSG00000016490|chr1:86473481-86473482|-/CTTGTTATT|inframe_insertion	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3118896484375	2	559.311284	1116.60801	0.51496	0.00028802	0.10061	5.6273E-05	0.61557	0.0003443	559.3112914817307	22.332	1.4945	22.332	22.197	23.691	0					88	35	3	0	0	0	0.098791	1	7393	7393		79.713	24.99	1	14981000			4233	1085	2350	2367	4315	4315					0.054374419511077576
ATGKRFYFK	9	Unmodified	_ATGKRFYFK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA1|p.N76_V77insLLF|1|0.06|ENSG00000016490|chr1:86473481-86473482|-/CTTGTTATT|inframe_insertion	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.5428771972656	3	373.209948	1116.60801	-1.0527	-0.00039289	0.57004	0.00021275	-0.48269	-0.00018015	373.21028321656485	22.075	1.6596	22.075	21.889	23.549	0					114	54	4	0	0	0	0.39215	1	6417	6417		58.23	23.078	1	6157800			4234	1085	2350	2367	4316	4316					0.054374419511077576
ATGKRFYFK	9	Unmodified	_ATGKRFYFK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA1|p.N76_V77insLLF|1|0.06|ENSG00000016490|chr1:86473481-86473482|-/CTTGTTATT|inframe_insertion	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.209716796875	3	373.209948	1116.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.64	1	44.64	44.14	45.14	0								0	0	0	0.28996	1	17886	17886		52.937	20.124	1				4235	1085	2350	2367	4317	4317					0.054374419511077576
ATGKRFYFK	9	Unmodified	_ATGKRFYFK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA1|p.N76_V77insLLF|1|0.06|ENSG00000016490|chr1:86473481-86473482|-/CTTGTTATT|inframe_insertion	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2097473144531	3	373.209948	1116.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.074	1	47.074	46.574	47.574	0								0	0	0	0.3304	1	18812	18812		36.447	12.924	1				4236	1085	2350	2367	4318	4318					0.054374419511077576
ATGKVMVMK	9	Unmodified	_ATGKVMVMK_					0	0	0		LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant;LIMK2|p.G411Afs*3|1|0.4|ENSG00000182541|chr22:31267874-31267874|G/-|frameshift_variant;nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7700500488281	2	482.769548	963.524544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.599	1	19.599	19.099	20.099	0								0	0	0	0.12601	1	5100	5100		65.465	26.659	1				4237	6902	2351	2368	4319	4319					0.041322461874187866
ATGKVMVMK	9	Unmodified	_ATGKVMVMK_					0	0	0		LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant;LIMK2|p.G411Afs*3|1|0.4|ENSG00000182541|chr22:31267874-31267874|G/-|frameshift_variant;nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.76934814453125	2	482.769548	963.524544	0.58087	0.00028043	-1.6801	-0.0008111	-1.0992	-0.00053067	482.76904758144855	19.929	0.16539	19.929	19.823	19.988	0					8	3	3	0	0	0	0.18416	1	6112	6112		63.534	8.0296	1	1280400			4238	6902	2351	2368	4320	4320					0.041322461874187866
ATGKVMVMK	9	Unmodified	_ATGKVMVMK_					0	0	0		LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant;LIMK2|p.G411Afs*3|1|0.4|ENSG00000182541|chr22:31267874-31267874|G/-|frameshift_variant;nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7690734863281	2	482.769548	963.524544	0.19522	9.4247E-05	-0.74612	-0.00036021	-0.5509	-0.00026596	482.7694800106191	19.639	0.10219	19.639	19.587	19.689	0					6	2	3	0	0	0	0.27123	1	5380	5380		53.089	22.585	1	68815			4239	6902	2351	2368	4321	4321					0.041322461874187866
ATGKVMVMK	9	Unmodified	_ATGKVMVMK_					0	0	0		LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant;LIMK2|p.G411Afs*3|1|0.4|ENSG00000182541|chr22:31267874-31267874|G/-|frameshift_variant;nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	LIMK2|p.K351T|1|0.32|ENSG00000182541|chr22:31266994-31266994|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.769287109375	2	482.769548	963.524544	-0.60659	-0.00029284	-0.32274	-0.00015581	-0.92933	-0.00044865	482.76960811542466	19.799	0.16969	19.799	19.741	19.91	0					7	3	3	0	0	0	0.056004	1	6198	6198		93.143	28.936	1	1214200			4240	6902	2351	2368	4322	4322					0.041322461874187866
ATGKWKQISK	10	Unmodified	_ATGKWKQISK_					0	0	0		ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	382.89208984375	3	382.892507	1145.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.666	1	17.666	17.166	18.166	0								0	0	0	0.39264	1	4258	4258		32.751	7.6245	1				4241	3497	2352	2369	4323	4323					0.08869096151306621
ATGKWKQISK	10	Unmodified	_ATGKWKQISK_					0	0	0		ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.8922424316406	3	382.892507	1145.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.991	1	17.991	17.491	18.491	0								0	0	0	0.3006	1	5179	5179		50.791	17.752	1				4242	3497	2352	2369	4324	4324					0.08869096151306621
ATGKWTKE	8	Unmodified	_ATGKWTKE_					0	0	0		LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant;ENSG00000011376|ENST00000645846|LARS2	LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.74713134765625	2	460.745442	919.476331	-0.11304	-5.2084E-05	4.3012	0.0019817	4.1881	0.0019297	460.7476118229392	19.751	0.096844	19.751	19.673	19.77	0					4	2	2	0	0	0	0.70598	1	5422	5422		32.812	0.85756	1	33864			4243	1049	2353	2370	4325	4325					0.013372118633697028
ATGLPISMK	9	Unmodified	_ATGLPISMK_					0	0	0		CD40LG|p.I33Sfs*4|1|0.75|ENSG00000102245|chrX:136648337-136648337|T/-|frameshift_variant;ENSG00000102245|ENST00000370629|CD40LG	CD40LG|p.I33Sfs*4|1|0.75|ENSG00000102245|chrX:136648337-136648337|T/-|frameshift_variant	CD40LG|p.I33Sfs*4|1|0.75|ENSG00000102245|chrX:136648337-136648337|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2597351074219	2	459.259871	916.505189	0.80472	0.00036958	-0.48995	-0.00022501	0.31477	0.00014456	459.2596581463575	34.221	0.20135	34.221	34.105	34.306	0					13	5	3	0	0	0	0.10915	1	12720	12720		77.318	8.8329	1	361090			4244	429	2354	2371	4326	4326					0.043596131681624684
ATGLPISMK	9	Unmodified	_ATGLPISMK_					0	0	0		CD40LG|p.I33Sfs*4|1|0.75|ENSG00000102245|chrX:136648337-136648337|T/-|frameshift_variant;ENSG00000102245|ENST00000370629|CD40LG	CD40LG|p.I33Sfs*4|1|0.75|ENSG00000102245|chrX:136648337-136648337|T/-|frameshift_variant	CD40LG|p.I33Sfs*4|1|0.75|ENSG00000102245|chrX:136648337-136648337|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2597351074219	2	459.259871	916.505189	0.72211	0.00033164	-0.61002	-0.00028016	0.11209	5.1479E-05	459.25956346297926	34.177	0.2669	34.177	34.044	34.311	0					11	6	2	0	0	0	0.11898	1	13161	13161		75.043	19.539	1	444500			4245	429	2354	2371	4327	4327					0.043596131681624684
ATGLSGLTK	9	Unmodified	_ATGLSGLTK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.2476501464844	2	424.247818	846.481082	-0.79728	-0.00033825	1.0925	0.00046349	0.2952	0.00012524	424.24810285245866	26.448	0.1788	26.448	26.356	26.535	0					7	4	2	0	0	0	0.13726	1	9135	9135		70.816	1.1886	1	322130			4246	5846	2355	2372	4328	4328					0.05170096006145286
ATGLSGLTK	9	Unmodified	_ATGLSGLTK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.2475280761719	2	424.247818	846.481082	-1.1179	-0.00047426	0.74521	0.00031616	-0.37266	-0.0001581	424.24813446645044	26.152	0.3298	26.152	26.086	26.416	0					24	10	3	0	0	0	0.017421	1	8179	8179		126.24	16.123	1	1361800			4247	5846	2355	2372	4329	4329					0.05170096006145286
ATGLSGLTK	9	Unmodified	_ATGLSGLTK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.2476806640625	2	424.247818	846.481082	0.14481	6.1435E-05	-0.28613	-0.00012139	-0.14132	-5.9956E-05	424.2476617207915	26.224	0.18595	26.224	26.133	26.319	0					6	4	2	0	0	0	0.18416	1	8422	8422		63.534	1.4264	1	133600			4248	5846	2355	2372	4330	4330					0.05170096006145286
ATGLSGLTK	9	Unmodified	_ATGLSGLTK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.2475891113281	2	424.247818	846.481082	-0.02164	-9.1808E-06	-0.21558	-9.1458E-05	-0.23722	-0.00010064	424.2476693209924	26.251	0.40165	26.251	26.121	26.523	0					19	9	3	0	0	0	0.0059092	1	8414	8414		154.12	31.942	1	1119100			4249	5846	2355	2372	4331	4331					0.05170096006145286
ATGLSGLTK	9	Unmodified	_ATGLSGLTK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.2476806640625	2	424.247818	846.481082	-0.36508	-0.00015488	-0.023524	-9.9802E-06	-0.38861	-0.00016486	424.2478452554634	26.405	0.26896	26.405	26.25	26.519	0					14	5	4	0	0	0	0.0059092	1	9312	9312		154.12	6.0754	1	1060600			4250	5846	2355	2372	4332	4332					0.05170096006145286
ATGLVKLKGK	10	Unmodified	_ATGLVKLKGK_					0	0	0			REV__nc|ENSG00000120694|Q92598-2|HSPH1	REV__nc|ENSG00000120694|Q92598-2|HSPH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.51513671875	3	338.893848	1013.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.99	1	11.99	11.49	12.49	0								0	0	0	0.40797	1	2445	2445		28.081	0.19925	1		+		4251	14292	2356	2373	4333	4333					0.15343185645042468
ATGLVLNR	8	Unmodified	_ATGLVLNR_					0	0	0		nc|ENSG00000183569|Q9H4I8-3|SERHL2;nc|ENSG00000183569|Q9H4I8-2|SERHL2;ENSG00000183569|ENST00000327678|SERHL2	nc|ENSG00000183569|Q9H4I8-3|SERHL2	nc|ENSG00000183569|Q9H4I8-3|SERHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2559814453125	2	422.255977	842.497401	-0.33696	-0.00014228	0.12056	5.0906E-05	-0.2164	-9.1378E-05	422.25598857553985	23.243	0.16787	23.243	23.133	23.301	0					5	3	2	0	0	0	0.61938	1	7866	7866		45.952	5.1738	1	246890			4252	6969	2357	2374	4334	4334					0.06985221962906962
ATGLVVRDD	9	Unmodified	_ATGLVVRDD_					0	0	0			REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67	REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.25726318359375	2	473.253631	944.49271	3.708	0.0017548	2.6033	0.001232	6.3113	0.0029868	473.2552407646798	28.677	0.14873	28.677	28.581	28.73	0					12	6	3	0	0	0	0.42902	1	9264	9264		39.253	1.4413	1	96937	+		4253	14237	2358	2375	4335	4335					0.018242930294718462
ATGNTVVMK	9	Unmodified	_ATGNTVVMK_					0	0	0		ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant;ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant;ENSG00000137124|ENST00000377698|ALDH1B1	ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant	ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7477722167969	2	460.747127	919.479702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.697	1	19.697	19.197	20.197	0								0	0	0	0.25587	1	5145	5145		42.864	2.0861	1				4254	112	2359	2376	4336	4336					0.01674138645739731
ATGNTVVMK	9	Unmodified	_ATGNTVVMK_					0	0	0		ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant;ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant;ENSG00000137124|ENST00000377698|ALDH1B1	ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant	ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7470703125	2	460.747127	919.479702	0.81521	0.00037561	-1.0552	-0.00048617	-0.23996	-0.00011056	460.7467695939416	20.025	0.15843	20.025	19.92	20.078	0					8	3	3	0	0	0	0.44593	1	6156	6156		37.812	0.65241	1	578400			4255	112	2359	2376	4337	4337					0.01674138645739731
ATGNTVVMK	9	Unmodified	_ATGNTVVMK_					0	0	0		ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant;ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant;ENSG00000137124|ENST00000377698|ALDH1B1	ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant	ALDH1B1|p.L216Sfs*20|1|0.21|ENSG00000137124|chr9:38396389-38396389|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7470397949219	2	460.747127	919.479702	-0.45681	-0.00021047	0.53721	0.00024752	0.080395	3.7042E-05	460.74761355519234	19.902	0.16892	19.902	19.842	20.011	0					7	3	3	0	0	0	0.017421	1	6244	6244		126.24	33.047	1	400760			4256	112	2359	2376	4338	4338					0.01674138645739731
ATGNVVVMK	9	Unmodified	_ATGNVVVMK_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2;ALDH2|p.A211T|1|0.12|ENSG00000111275|chr12:111790512-111790512|G/A|missense_variant	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7579040527344	2	459.757495	917.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.914	1	23.914	23.414	24.414	0								0	0	0	0.0026034	1	7984	7984		150.36	62.607	1				4257	2659	2360	2377	4339	4339					0.03838729025403609
ATGNVVVMK	9	Unmodified	_ATGNVVVMK_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2;ALDH2|p.A211T|1|0.12|ENSG00000111275|chr12:111790512-111790512|G/A|missense_variant	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.75726318359375	2	459.757495	917.500437	-0.15473	-7.1136E-05	-1.2991	-0.00059726	-1.4538	-0.0006684	459.7573715406035	23.821	0.21644	23.821	23.762	23.979	0					8	4	3	0	0	0	0.00026591	1	8269	8269		190.26	90.887	1	721030			4258	2659	2360	2377	4340	4340					0.03838729025403609
ATGNWGDQKK	10	Unmodified	_ATGNWGDQKK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7748413085938	2	552.775262	1103.53597	-0.38791	-0.00021443	0.63425	0.0003506	0.24634	0.00013617	552.775674714457	15.942	0.15618	15.942	15.855	16.011	0					12	6	3	0	0	0	0.14893	1	3718	3718		75.043	18.322	1	180990			4259	1217	2361	2378	4341	4341					-0.011655171932488884
ATGNWGDQKK	10	Unmodified	_ATGNWGDQKK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7755126953125	2	552.775262	1103.53597	0.064809	3.5825E-05	0.57817	0.0003196	0.64298	0.00035542	552.7755035634452	16.205	0.21671	16.205	16.097	16.313	0					8	4	2	0	0	0	0.0084686	1	4573	4573		140.11	59.658	1	1139200			4260	1217	2361	2378	4342	4342					-0.011655171932488884
ATGPALDNK	9	Unmodified	_ATGPALDNK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.73492431640625	2	443.735074	885.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.456	1	18.456	17.956	18.956	0								0	0	0	0.29356	1	4593	4593		36.447	2.9312	1				4261	7380	2362	2379	4343	4343					0.008286214837085026
ATGPALDNK	9	Unmodified	_ATGPALDNK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7347106933594	2	443.735074	885.455596	-0.36267	-0.00016093	0.32129	0.00014257	-0.041388	-1.8366E-05	443.7351622063527	18.798	0.19401	18.798	18.671	18.865	0					9	5	3	0	0	0	0.063171	1	5550	5550		90.601	29.629	1	649960			4262	7380	2362	2379	4344	4344					0.008286214837085026
ATGPALDNK	9	Unmodified	_ATGPALDNK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.73486328125	2	443.735074	885.455596	0.5259	0.00023336	-0.83829	-0.00037198	-0.31239	-0.00013862	443.73475206396796	18.753	0.38944	18.753	18.595	18.984	0					9	8	2	0	0	0	0.02953	1	5801	5801		109.48	35.223	1	612710			4263	7380	2362	2379	4345	4345					0.008286214837085026
ATGPALDNK	9	Unmodified	_ATGPALDNK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.73480224609375	2	443.735074	885.455596	-2.8509	-0.001265	2.5927	0.0011505	-0.2582	-0.00011457	443.73622898341716	18.573	0.18032	18.573	18.398	18.578	0					6	5	2	0	0	0	0.19605	1	4863	4863		62.107	5.3864	1	133680			4264	7380	2362	2379	4346	4346					0.008286214837085026
ATGPPALLR	9	Unmodified	_ATGPPALLR_					0	0	0		nc|ENSG00000054690|Q9ULM0-2|PLEKHH1;ENST00000558981.5_1_14:68038444-68042282:+|nuORF;ENSG00000054690|ENST00000329153|PLEKHH1	nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.27154541015625	2	448.271627	894.528701	0.61667	0.00027643	-0.22606	-0.00010134	0.39061	0.0001751	448.2716996021961	31.255	0.80316	31.255	30.742	31.545	0					29	19	2	0	0	0	0.25716	1	11356	11356		54.776	12.38	1	357100			4265	1273	2363	2380	4347	4347					0.07721794996996323
ATGQDLDNAL	10	Unmodified	_ATGQDLDNAL_					0	0	0			REV__ENSG00000214694|ENST00000409978|ARHGEF33	REV__ENSG00000214694|ENST00000409978|ARHGEF33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.24658203125	2	509.246003	1016.47745	-1.8599	-0.00094712	3.1109	0.0015842	1.251	0.00063708	509.2471405120611	19.268	0.1378	19.268	19.181	19.318	0					5	3	2	0	0	0	0.4758	1	5212	5212		47.96	5.0953	1	120980	+		4266	17582	2364	2381	4348	4348					-0.03012618558398117
ATGQKLMRAV	10	Unmodified	_ATGQKLMRAV_					0	0	0		ENSG00000116791|ENST00000340866|CRYZ;nc|ENSG00000116791|Q08257-3|CRYZ	ENSG00000116791|ENST00000340866|CRYZ	ENSG00000116791|ENST00000340866|CRYZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.8747253417969	3	358.874459	1073.60155	-0.90802	-0.00032587	0.52766	0.00018936	-0.38037	-0.0001365	358.8747525648249	24.977	0.099699	24.977	24.904	25.004	0					5	3	2	0	0	0	0.63224	1	7717	7717		30.318	2.2362	1	39540			4267	3005	2365	2382	4349	4349					0.06769180728110769
ATGRAFLFNK	10	Unmodified	_ATGRAFLFNK_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.5455322265625	3	375.545219	1123.61383	-0.37515	-0.00014089	0.85462	0.00032095	0.47947	0.00018006	375.5455704100408	29.657	0.31318	29.657	29.549	29.862	0					9	6	2	0	0	0	0.59277	1	10880	10880		55.084	31.561	1	517020			4268	3142	2366	2383	4350	4350					0.056965404627817406
ATGRICLDIR	10	Unmodified	_ATGRICLDIR_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.20977783203125	3	373.209731	1116.60736	0.84964	0.0003171	-0.42527	-0.00015872	0.42437	0.00015838	373.2095971942205	44.949	0.27452	44.949	44.797	45.071	0					27	15	2	0	0	0	0.65895	1	17456	17456		27.047	0	1	112310			4269	5862	2367	2384	4351	4351					0.053722792397593366
ATGRLGELLR	10	Unmodified	_ATGRLGELLR_					0	0	0			REV__ENSG00000235961|ENST00000421798|PNMA6A	REV__ENSG00000235961|ENST00000421798|PNMA6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.55230712890625	3	362.552374	1084.63529	0.73436	0.00026624	-0.69792	-0.00025303	0.036445	1.3213E-05	362.5520613423448	33.585	0.39538	33.585	33.497	33.893	0					18	10	3	0	0	0	0.50287	1	12443	12443		45.022	7.514	1	1186700	+		4270	17660	2368	2385	4352	4352					0.09635925491511443
ATGRLPVI	8	Unmodified	_ATGRLPVI_					0	0	0			REV__ENST00000267116.7_1_12:56632135-56632420:-|nuORF	REV__ENST00000267116.7_1_12:56632135-56632420:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.76068115234375	2	413.760895	825.507237	-0.7322	-0.00030295	0.10787	4.4633E-05	-0.62432	-0.00025832	413.76096236641445	35.57	0.26561	35.57	35.445	35.711	0					16	7	3	0	0	0	0.66372	1	13353	13353		38.806	6.8513	1	268130	+		4271	18085	2369	2386	4353	4353					0.08750409968274653
ATGSANMTK	9	Unmodified	_ATGSANMTK_					0	0	0		SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant;ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A	SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant	SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7132873535156	2	440.713285	879.412016	0.56258	0.00024794	-0.40356	-0.00017785	0.15902	7.0083E-05	440.7130300868663	14.118	0.094261	14.118	14.061	14.156	0					4	2	2	0	0	0	0.36135	1	3379	3379		45.022	2.5477	1	104160			4272	4763	2370	2387	4354	4354					-0.03251311285077918
ATGSANMTK	9	Unmodified	_ATGSANMTK_					0	0	0		SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant;ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A	SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant	SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.713134765625	2	440.713285	879.412016	0.55402	0.00024417	-1.1365	-0.00050087	-0.58246	-0.0002567	440.71286056667435	14.081	0.3104	14.081	13.974	14.284	0					12	6	3	0	0	0	0.0030642	1	3584	3584		168.26	60.171	1	1160400			4273	4763	2370	2387	4355	4355					-0.03251311285077918
ATGSANMTK	9	Unmodified	_ATGSANMTK_					0	0	0		SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant;ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A	SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant	SPIN2B|p.L82Ifs*3|1|0.16|ENSG00000186787|chrX:57120383-57120386|AAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.713134765625	2	440.713285	879.412016	0.71053	0.00031314	-1.2112	-0.00053379	-0.50067	-0.00022065	440.71274261078156	14.095	0.16051	14.095	13.994	14.154	0					5	3	2	0	0	0	0.24334	1	3441	3441		56.434	14.038	1	220780			4274	4763	2370	2387	4356	4356					-0.03251311285077918
ATGSAPLNQ	9	Unmodified	_ATGSAPLNQ_					0	0	0			REV__ENST00000447799.5_1_12:104165049-104171017:-|nuORF	REV__ENST00000447799.5_1_12:104165049-104171017:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7193603515625	2	429.719424	857.424296	-0.44019	-0.00018916	0.88579	0.00038064	0.44559	0.00019148	429.71968467122304	14.969	0.16953	14.969	14.86	15.029	0					6	3	2	0	0	0	0.1424	1	3856	3856		69.628	2.134	1	179830	+		4275	19291	2371	2388	4357	4357					-0.010119515503788534
ATGSEVSQRK	10	Unmodified	_ATGSEVSQRK_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7809448242188	2	531.780544	1061.54654	0.12146	6.4592E-05	1.0347	0.00055024	1.1562	0.00061484	531.7810136034045	13.114	0.11646	13.114	13.034	13.151	0					5	3	2	0	0	0	0.40476	1	2918	2918		68.846	14.07	1	853460			4276	1919	2372	2389	4358	4358					0.018224654611913138
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.2319641113281	2	434.232168	866.449782	0.20495	8.8994E-05	-0.63633	-0.00027631	-0.43138	-0.00018732	434.2318691672631	22.759	0.37301	22.759	22.694	23.067	0					23	12	3	0	0	0	0.054723	1	6476	6476		93.598	34.816	1	213490			4277	3487	2373	2390	4359	4359					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.23211669921875	2	434.232168	866.449782	0.69634	0.00030238	-0.57457	-0.0002495	0.12178	5.2879E-05	434.23174890317273	23.099	0.44876	23.099	23.007	23.456	0					27	10	3	0	0	0	0.00072198	1	7608	7608		185.72	95.349	1	1932200			4278	3487	2373	2390	4360	4360					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.2322082519531	2	434.232168	866.449782	-0.80645	-0.00035019	0.45051	0.00019562	-0.35594	-0.00015456	434.23252694258366	22.831	0.11357	22.831	22.771	22.884	0					7	4	2	0	0	0	0.16806	1	6778	6778		65.465	19.493	1	108110			4279	3487	2373	2390	4361	4361					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.23187255859375	2	434.232168	866.449782	-0.44892	-0.00019493	-0.015505	-6.733E-06	-0.46442	-0.00020167	434.23214575355155	23.02	0.36804	23.02	22.911	23.279	0					16	7	3	0	0	0	0.017421	1	7861	7861		126.24	41.327	1	1181600			4280	3487	2373	2390	4362	4362					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.23187255859375	2	434.232168	866.449782	0.88185	0.00038293	-1.0961	-0.00047595	-0.21423	-9.3027E-05	434.2316349586234	23.003	0.41766	23.003	22.894	23.312	0					15	8	2	0	0	0	0.0067848	1	7880	7880		150.36	81.575	1	554510			4281	3487	2373	2390	4363	4363					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.23211669921875	2	434.232168	866.449782	0.22131	9.6099E-05	-0.48741	-0.00021165	-0.2661	-0.00011555	434.2319631937764	22.891	0.31542	22.891	22.795	23.11	0					11	7	2	0	0	0	0.047855	1	6886	6886		96.034	31.826	1	185260			4282	3487	2373	2390	4364	4364					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.2320251464844	2	434.232168	866.449782	-0.54581	-0.00023701	-0.070186	-3.0477E-05	-0.61599	-0.00026748	434.232226284342	22.874	0.35511	22.874	22.781	23.136	0					11	8	2	0	0	0	0.026538	1	6898	6898		112.41	45.982	1	247440			4283	3487	2373	2390	4365	4365					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.2320556640625	2	434.232168	866.449782	-0.51321	-0.00022285	0.2123	9.2189E-05	-0.3009	-0.00013066	434.23223160578806	22.999	0.41267	22.999	22.889	23.301	0					22	8	3	0	0	0	0.0059092	1	7742	7742		154.12	66.364	1	1777500			4284	3487	2373	2390	4366	4366					0.01121522972061939
ATGSWDSFLK	10	Unmodified	_ATGSWDSFLK_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2	ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000111664|P16520-2|GNB3	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.2752075195312	2	556.274564	1110.53457	0.20969	0.00011664	1.3555	0.00075403	1.5652	0.00087067	556.2753110055381	44.744	0.19582	44.744	44.671	44.866	0					22	12	3	0	0	0	0.15289	1	14482	14482		83.647	49.725	1	158870			4285	1600;2681	2374	2391	4367	4367					-0.016271512820139833
ATGSWDSFLK	10	Unmodified	_ATGSWDSFLK_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2	ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000111664|P16520-2|GNB3	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2755126953125	2	556.274564	1110.53457	1.6918	0.00094113	-0.78466	-0.00043649	0.90718	0.00050464	556.27407328108	44.946	0.52914	44.946	44.845	45.375	0					78	30	5	0	0	0	0.15289	1	17424	17424		83.647	38.625	1	1254400			4286	1600;2681	2374	2391	4368	4368					-0.016271512820139833
ATGSWDSFLK	10	Unmodified	_ATGSWDSFLK_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2	ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000111664|P16520-2|GNB3	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2750854492188	2	556.274564	1110.53457	1.8227	0.0010139	-1.2594	-0.00070058	0.56328	0.00031334	556.2738804583599	44.914	0.30029	44.914	44.743	45.043	0					18	12	3	0	0	0	0.24594	1	17974	17974		80.455	22.225	1	217240			4287	1600;2681	2374	2391	4369	4369					-0.016271512820139833
ATGTFKAKAL	10	Unmodified	_ATGTFKAKAL_					0	0	0		PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53424072265625	3	336.53432	1006.58113	0.53459	0.00017991	-0.68095	-0.00022916	-0.14636	-4.9254E-05	336.53404801484345	37.053	1.572	37.053	36.302	37.874	0					86	47	2	0	0	0	0.69166	1	14444	14444		21.686	2.5822	1	176090			4288	6755	2375	2392	4370	4370					0.0781033333993264
ATGTFKAKAL	10	Unmodified	_ATGTFKAKAL_					0	0	0		PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53558349609375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.061	1	25.061	24.561	25.561	0								0	0	0	0.40446	1	8727	8727		33.922	9.7189	1				4289	6755	2375	2392	4371	4371					0.0781033333993264
ATGTGSKVGK	10	Unmodified	_ATGTGSKVGK_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.255859375	2	453.256174	904.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.52	1	11.52	11.02	12.02	0								0	0	0	0.36846	1	2378	2378		40.058	0.80534	1				4290	6946	2376	2393	4372	4372					0.0417259689210141
ATGTSALII	9	Unmodified	_ATGTSALII_					0	0	0			REV__ENST00000419696.1_1_1:117256762-117256939:-|nuORF	REV__ENST00000419696.1_1_1:117256762-117256939:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.74969482421875	2	423.750193	845.485833	0.96617	0.00040941	-1.6983	-0.00071967	-0.73217	-0.00031026	423.74940697162435	39.076	0.18703	39.076	38.981	39.168	0					11	7	2	0	0	0	0.087582	1	14869	14869		82.305	8.3303	1	61058	+		4291	19063	2377	2394	4373	4373					0.056909801489041456
ATGTSILK	8	Unmodified	_ATGTSILK_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.7368469238281	2	395.737086	789.459619	0.90553	0.00035835	-1.2291	-0.00048639	-0.32356	-0.00012804	395.73654381355595	23.268	0.14716	23.268	23.177	23.324	0					8	3	3	0	0	0	0.43813	1	7691	7691		66.429	18.514	1	539660			4292	5226	2378	2395	4374	4374					0.05646710977441671
ATGTSILK	8	Unmodified	_ATGTSILK_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.7370300292969	2	395.737086	789.459619	0.40497	0.00016026	-0.34685	-0.00013726	0.058122	2.3001E-05	395.7368725807672	23.175	0.21568	23.175	23.069	23.284	0					8	4	2	0	0	0	0.32815	1	7833	7833		79.451	13.648	1	591630			4293	5226	2378	2395	4375	4375					0.05646710977441671
ATGTVSTVWK	10	Unmodified	_ATGTVSTVWK_					0	0	0		ENST00000371269.7_1_1:55315325-55315445:-|nuORF	ENST00000371269.7_1_1:55315325-55315445:-|nuORF	ENST00000371269.7_1_1:55315325-55315445:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2860717773438	2	525.284931	1048.55531	1.3926	0.00073153	0.17238	9.0548E-05	1.565	0.00082208	525.2851053210053	27.109	0.12134	27.109	27.067	27.188	0					7	4	2	0	0	0	0.57211	1	8323	8323		19.104	0	1	52228			4294	8967	2379	2396	4376	4376					0.03297439097673305
ATGVVLAGP	9	Unmodified	_ATGVVLAGP_					0	0	0			REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant	REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.731689453125	2	392.731803	783.449054	0.57156	0.00022447	-0.68237	-0.00026799	-0.11081	-4.3519E-05	392.73153126230886	19.441	0.51609	19.441	19.166	19.682	0					27	15	3	0	0	0	0.39123	1	4981	4981		42.474	1.9018	1	132220	+		4295	12501	2380	2397	4377	4377					0.048667283229860914
ATGYSHLLK	9	Unmodified	_ATGYSHLLK_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2742004394531	2	495.274367	988.53418	-0.75945	-0.00037614	0.23155	0.00011468	-0.5279	-0.00026146	495.2745761326422	24.786	0.1648	24.786	24.677	24.842	0					6	3	2	0	0	0	0.28897	1	8726	8726		51.193	11.135	1	348160			4296	11683	2381	2398	4378	4378					0.03945473788803611
ATHAGLYRK	9	Unmodified	_ATHAGLYRK_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;ENST00000593706.3_1_19:50365412-50367307:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5260314941406	3	339.526047	1015.55631	0.66814	0.00022685	-0.62561	-0.00021241	0.042534	1.4441E-05	339.5258139204955	15.333	0.26196	15.333	15.241	15.503	0					11	6	2	0	0	0	0.47038	1	3947	3947		60.118	24.94	1	723690			4297	1189	2382	2399	4379	4379					0.04915698257218537
ATHAGLYRK	9	Unmodified	_ATHAGLYRK_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;ENST00000593706.3_1_19:50365412-50367307:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.78521728515625	2	508.785433	1015.55631	-0.021823	-1.1103E-05	0.0054477	2.7717E-06	-0.016375	-8.3314E-06	508.7855426802215	15.322	0.38905	15.322	15.269	15.658	0					19	9	3	0	0	0	0.098791	1	3938	3938		79.713	7.8351	1	1274500			4298	1189	2382	2399	4380	4380					0.04915698257218537
ATHAVAPKPQ	10	Unmodified	_ATHAVAPKPQ_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.5244140625	3	340.525936	1018.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.36	1	11.36	10.86	11.86	0								0	0	0	0.40797	1	2306	2306		28.081	1.3886	1		+		4299	15057	2383	2400	4381	4381					0.04744278537373248
ATHFHVLVPP	10	Unmodified	_ATHFHVLVPP_					0	0	0			REV__ENST00000474649.1_1_7:100184248-100189648:+|nuORF	REV__ENST00000474649.1_1_7:100184248-100189648:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.2091369628906	3	373.209948	1116.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.77	1	28.77	28.27	29.27	0								0	0	0	0.4201	1	9594	9594		16.717	1.0756	1		+		4300	19520	2384	2401	4382	4382					0.05437441951130495
ATHIEVPI	8	Unmodified	_ATHIEVPI_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.2498474121094	2	440.25036	878.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.314	1	25.314	24.814	25.814	0								0	0	0	1.7419	1	7860	7860		35.201	1.6851	1		+		4301	17510	2385	2402	4383	4383					0.04206399868758126
ATHIVTEFI	9	Unmodified	_ATHIVTEFI_					0	0	0		ENSG00000176198|ENST00000641082|OR11H4;nc|ENSG00000176198|Q8NGC9|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.1892395019531	3	344.190442	1029.5495	-0.70263	-0.00024184	-2.428	-0.00083571	-3.1307	-0.0010775	344.1894586797528	21.69	0.12143	21.69	21.624	21.746	0					5	3	2	0	0	0	0.61124	1	6261	6261		19.997	0.89325	1	70551			4302	6594	2386	2403	4384	4384					0.035903405860153725
ATHIVVHAGAV	11	Unmodified	_ATHIVVHAGAV_					0	0	0			REV__HSD3B7|p.L182Cfs*4|1|0.23|ENSG00000099377|chr16:30986846-30986846|G/-|frameshift_variant	REV__HSD3B7|p.L182Cfs*4|1|0.23|ENSG00000099377|chr16:30986846-30986846|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.8742980957031	3	358.873336	1073.59818	1.4308	0.00051347	1.1692	0.00041959	2.6	0.00093307	358.873659185911	25.197	0.36974	25.197	25.089	25.459	0					9	7	2	0	0	0	0.71641	1	8929	8929		26.063	2.5407	1	738390	+		4303	13495	2387	2404	4385	4385					0.0643225394574074
ATHLLVAP	8	Unmodified	_ATHLLVAP_					0	0	0			REV__ENST00000428443.7_1_2:179967411-179967483:-|nuORF	REV__ENST00000428443.7_1_2:179967411-179967483:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.2473449707031	2	411.247621	820.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.488	1	35.488	34.988	35.988	0								0	0	0	1.7419	1	13312	13312		23.037	1.3344	1		+		4304	19135	2388	2405	4386	4386					0.06326721076936792
ATHLVIRPA	9	Unmodified	_ATHLVIRPA_					0	0	0			REV__ORC3|p.A598V|1|0.34|ENSG00000135336|chr6:87663104-87663104|C/T|missense_variant	REV__ORC3|p.A598V|1|0.34|ENSG00000135336|chr6:87663104-87663104|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	326.5345458984375	3	326.534543	976.581799	0.5541	0.00018093	-0.4601	-0.00015024	0.093995	3.0693E-05	326.5343285542383	18.03	0.11742	18.03	17.971	18.088	0					4	2	2	0	0	0	0.59802	1	5476	5476		21.96	1.013	1	234360	+		4305	21327	2389	2406	4387	4387					0.09257172779643952
ATHLVTKAK	9	Unmodified	_ATHLVTKAK_					0	0	0		ENST00000485363.1_1_11:116775672-116969011:-|nuORF;SIK3|p.F285Lfs*9|1|0.33|ENSG00000160584|chr11:116896263-116896263|A/-|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7973327636719	2	484.798009	967.581465	0.034831	1.6886E-05	-1.0815	-0.00052429	-1.0466	-0.00050741	484.7975509004703	13.995	0.081081	13.995	13.938	14.019	0					6	4	2	0	0	0	0.12834	1	2816	2816		72.879	39.364	1	90337			4306	5372	2390	2407	4388	4388					0.09637753059803345
ATHLVTKAK	9	Unmodified	_ATHLVTKAK_					0	0	0		ENST00000485363.1_1_11:116775672-116969011:-|nuORF;SIK3|p.F285Lfs*9|1|0.33|ENSG00000160584|chr11:116896263-116896263|A/-|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7978210449219	2	484.798009	967.581465	-0.22286	-0.00010804	-0.029692	-1.4395E-05	-0.25256	-0.00012244	484.7979702794655	14.374	0.12845	14.374	14.289	14.417	0					8	3	3	0	0	0	0.012231	1	3492	3492		136.27	56.556	1	1013600			4307	5372	2390	2407	4389	4389					0.09637753059803345
ATHLVTKAK	9	Unmodified	_ATHLVTKAK_					0	0	0		ENST00000485363.1_1_11:116775672-116969011:-|nuORF;SIK3|p.F285Lfs*9|1|0.33|ENSG00000160584|chr11:116896263-116896263|A/-|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7982177734375	2	484.798009	967.581465	-0.63965	-0.0003101	1.0064	0.00048789	0.36673	0.00017779	484.7984412716764	14.259	0.11594	14.259	14.201	14.317	0					4	2	2	0	0	0	0.056004	1	3669	3669		93.143	28.936	1	509150			4308	5372	2390	2407	4390	4390					0.09637753059803345
ATHLVTKAK	9	Unmodified	_ATHLVTKAK_					0	0	0		ENST00000485363.1_1_11:116775672-116969011:-|nuORF;SIK3|p.F285Lfs*9|1|0.33|ENSG00000160584|chr11:116896263-116896263|A/-|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	323.5344543457031	3	323.534431	967.581465	0.55855	0.00018071	-0.31935	-0.00010332	0.2392	7.7389E-05	323.53424046375176	14.259	0.1668	14.259	14.15	14.317	0					5	3	2	0	0	0	0.48389	1	3670	3670		49.536	18.006	1	429440			4309	5372	2390	2407	4391	4391					0.09637753059803345
ATHLVTKAK	9	Unmodified	_ATHLVTKAK_					0	0	0		ENST00000485363.1_1_11:116775672-116969011:-|nuORF;SIK3|p.F285Lfs*9|1|0.33|ENSG00000160584|chr11:116896263-116896263|A/-|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	ENST00000485363.1_1_11:116775672-116969011:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7985534667969	2	484.798009	967.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.077	1	14.077	13.577	14.577	0								0	0	0	0.18645	1	2927	2927		52.937	23.095	1				4310	5372	2390	2407	4392	4392					0.09637753059803345
ATHPDVQQK	9	Unmodified	_ATHPDVQQK_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160868|ENST00000651514|CYP3A4;CYP3A7|p.V331Cfs*30|1|0.13|ENSG00000160870|chr7:99710768-99710768|T/-|frameshift_variant;nc|ENSG00000021461|Q9HB55-6|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000160870|P24462-2|CYP3A7	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2640380859375	2	512.26453	1022.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.218	1	14.218	13.718	14.718	0								0	0	0	0.38667	1	3418	3418		14.865	2.658	1				4311	2426	2391	2408	4393	4393					0.004150977780454923
ATHPDVQQK	9	Unmodified	_ATHPDVQQK_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160868|ENST00000651514|CYP3A4;CYP3A7|p.V331Cfs*30|1|0.13|ENSG00000160870|chr7:99710768-99710768|T/-|frameshift_variant;nc|ENSG00000021461|Q9HB55-6|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000160870|P24462-2|CYP3A7	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2645263671875	2	512.26453	1022.51451	1.4188	0.00072683	-1.2515	-0.00064108	0.16739	8.5746E-05	512.2638167005337	14.146	0.16389	14.146	14.042	14.205	0					5	3	2	0	0	0	0.42902	1	3467	3467		39.253	11.371	1	224840			4312	2426	2391	2408	4394	4394					0.004150977780454923
ATHRQKLY	8	Unmodified	_ATHRQKLY_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.52593994140625	3	339.526047	1015.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.297	1	15.297	14.797	15.797	0								0	0	0	1.7419	1	4000	4000		34.173	5.0025	1				4313	6178	2392	2409	4395	4395					0.04915698257218537
ATHSQLLVK	9	Unmodified	_ATHSQLLVK_					0	0	0		ENST00000415922.6_1_6:26636045-26636150:-|nuORF	ENST00000415922.6_1_6:26636045-26636150:-|nuORF	ENST00000415922.6_1_6:26636045-26636150:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.8656921386719	3	332.86607	995.57638	0.26054	8.6725E-05	-0.26954	-8.9721E-05	-0.0090003	-2.9959E-06	332.8657863169274	23.565	0.099659	23.565	23.495	23.595	0					6	4	2	0	0	0	0.59802	1	6833	6833		29.17	13.163	1	71373			4314	9351	2393	2410	4396	4396					0.07841449197189831
ATHTAFVAK	9	Unmodified	_ATHTAFVAK_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2610168457031	2	473.261259	944.507966	-0.50537	-0.00023917	-0.1882	-8.9068E-05	-0.69357	-0.00032824	473.26100647449766	17.786	0.14418	17.786	17.689	17.834	0					7	3	3	0	0	0	0.07136	1	4499	4499		87.696	48.444	1	247300			4315	11500	2394	2411	4397	4397					0.03349204617336454
ATHTAFVAK	9	Unmodified	_ATHTAFVAK_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.26080322265625	2	473.261259	944.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.99	1	17.99	17.49	18.49	0								0	0	0	0.040851	1	5297	5297		90.37	27.064	1				4316	11500	2394	2411	4398	4398					0.03349204617336454
ATHVGSVEK	9	Unmodified	_ATHVGSVEK_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.24835205078125	2	464.248349	926.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.684	1	14.684	14.184	15.184	0								0	0	0	0.11736	1	3065	3065		67.494	14.142	1				4317	1649	2395	2412	4399	4399					0.015963103750436858
ATHVGSVEK	9	Unmodified	_ATHVGSVEK_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.24847412109375	2	464.248349	926.482145	0.096034	4.4584E-05	0.28414	0.00013191	0.38017	0.00017649	464.2485681311562	14.959	0.097094	14.959	14.913	15.01	0					4	2	2	0	0	0	0.0406	1	3770	3770		98.629	24.655	1	249010			4318	1649	2395	2412	4400	4400					0.015963103750436858
ATHVGSVEK	9	Unmodified	_ATHVGSVEK_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2481689453125	2	464.248349	926.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.979	1	14.979	14.479	15.479	0								0	0	0	0.24544	1	4004	4004		44.377	5.1244	1				4319	1649	2395	2412	4401	4401					0.015963103750436858
ATIALMIQR	9	Unmodified	_ATIALMIQR_					0	0	0		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7992248535156	2	508.799694	1015.58484	-0.022351	-1.1372E-05	-0.91301	-0.00046454	-0.93536	-0.00047591	508.79916914231933	38.895	0.19899	38.895	38.836	39.035	0					11	7	2	0	0	0	0.0086566	1	14782	14782		143.89	33.767	1	236760			4320	3152	2396	2413	4402	4402					0.07766679842166013
ATIALMIQR	9	Unmodified	_ATIALMIQR_					0	0	0		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.79931640625	2	508.799694	1015.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.896	1	38.896	38.396	39.396	0								0	0	0	0.091069	1	15276	15276		74.255	15.473	1				4321	3152	2396	2413	4403	4403					0.07766679842166013
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF;TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2663269042969	2	501.266739	1000.51892	-0.044838	-2.2476E-05	-0.16674	-8.358E-05	-0.21158	-0.00010606	501.26655638262594	21.744	0.23768	21.744	21.64	21.878	0					16	7	3	0	0	0	0.18316	1	6038	6038		81.525	10.229	1	478630			4322	3007	2397	2414	4404	4404					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF;TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.26654052734375	2	501.266739	1000.51892	-0.11069	-5.5485E-05	0.1555	7.7949E-05	0.044814	2.2464E-05	501.26664856372355	22.069	0.44197	22.069	21.809	22.251	0					25	10	5	0	0	0	0.022799	1	7098	7098		123.21	46.361	1	3457300			4323	3007	2397	2414	4405	4405					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF;TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2669372558594	2	501.266739	1000.51892	-0.96655	-0.0004845	0.97398	0.00048822	0.0074299	3.7244E-06	501.2670402219332	21.789	0.47827	21.789	21.6	22.078	0					33	14	4	0	0	0	0.01518	1	6299	6299		128.6	64.395	1	1217700			4324	3007	2397	2414	4406	4406					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF;TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.26654052734375	2	501.266739	1000.51892	0.94132	0.00047185	-0.96534	-0.00048389	-0.024019	-1.204E-05	501.2660526974744	21.969	0.70983	21.969	21.608	22.318	0					44	14	5	0	0	0	0.0093015	1	7349	7349		145.46	52.265	1	6437800			4325	3007	2397	2414	4407	4407					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF;TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.266357421875	2	501.266739	1000.51892	0.14711	7.3742E-05	-0.014268	-7.1521E-06	0.13284	6.659E-05	501.26654120431243	21.813	0.32754	21.813	21.629	21.957	0					15	7	4	0	0	0	0.065778	1	6379	6379		104.01	29.759	1	672440			4326	3007	2397	2414	4408	4408					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF;TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2665100097656	2	501.266739	1000.51892	1.1205	0.00056168	-1.6392	-0.0008217	-0.51873	-0.00026002	501.2656330536318	21.981	0.61551	21.981	21.721	22.337	0					30	12	4	0	0	0	0.0013826	1	7228	7228		178.55	79.918	1	4300800			4327	3007	2397	2414	4409	4409					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF;TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2666320800781	2	501.266739	1000.51892	2.9233	0.0014654	-2.3695	-0.0011877	0.55387	0.00027764	501.2653154253575	21.962	0.5657	21.962	21.704	22.27	0					25	11	3	0	0	0	0.01518	1	7218	7218		128.6	46.297	1	5819900			4328	3007	2397	2414	4410	4410					0.01868562200957058
ATIDSQHGIEK	11	Unmodified	_ATIDSQHGIEK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	599.8072509765625	2	599.806759	1197.59897	0.14018	8.408E-05	-0.36419	-0.00021844	-0.22401	-0.00013436	599.8068978969634	19.795	0.1349	19.795	19.727	19.862	0					9	4	3	0	0	0	0.0010753	1	5181	5181		126.03	32.83	1	103230			4329	2602	2398	2415	4411	4411					0.008070038041296357
ATIDSQHGIEK	11	Unmodified	_ATIDSQHGIEK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.806884765625	2	599.806759	1197.59897	-0.1172	-7.0299E-05	0.51879	0.00031117	0.40159	0.00024087	599.8069563871843	20.104	0.38195	20.104	20.005	20.387	0					12	8	3	0	0	0	0.020117	1	6191	6191		102.95	50.018	1	1404400			4330	2602	2398	2415	4412	4412					0.008070038041296357
ATIDSQHGIEK	11	Unmodified	_ATIDSQHGIEK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	599.8068237304688	2	599.806759	1197.59897	0.29021	0.00017407	0.26684	0.00016006	0.55706	0.00033413	599.8066262216349	19.804	0.12675	19.804	19.746	19.872	0					9	4	3	0	0	0	0.041277	1	5420	5420		82.831	31.638	1	158160			4331	2602	2398	2415	4413	4413					0.008070038041296357
ATIDSQHGIEK	11	Unmodified	_ATIDSQHGIEK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.8070678710938	2	599.806759	1197.59897	0.22603	0.00013558	0.14856	8.9109E-05	0.37459	0.00022468	599.806819930558	20.003	0.26766	20.003	19.894	20.161	0					12	5	4	0	0	0	2.692E-06	1	6403	6403		173.24	85.059	1	1246500			4332	2602	2398	2415	4414	4414					0.008070038041296357
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.25732421875	2	520.256371	1038.49819	1.4623	0.00076075	-0.34468	-0.00017932	1.1176	0.00058143	520.2562688304166	25.951	0.34865	25.951	25.744	26.093	0					17	8	3	0	0	0	0.0088974	1	7821	7821		143.37	71.496	1	627050			4333	5200	2399	2416	4415	4415					-0.01952028178720866
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.256591796875	2	520.256371	1038.49819	1.3838	0.00071993	-0.77639	-0.00040392	0.6074	0.000316	520.2558992968853	26.022	0.23367	26.022	25.916	26.15	0					13	5	3	0	0	0	0.0055674	1	8305	8305		155.58	66.942	1	530330			4334	5200	2399	2416	4416	4416					-0.01952028178720866
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2565307617188	2	520.256371	1038.49819	1.0113	0.00052615	-0.37747	-0.00019638	0.63387	0.00032978	520.256228864211	26.005	0.22803	26.005	25.905	26.133	0					10	5	3	0	0	0	0.015496	1	8319	8319		129.42	61.928	1	279940			4335	5200	2399	2416	4417	4417					-0.01952028178720866
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2565307617188	2	520.256371	1038.49819	0.33424	0.00017389	-0.093239	-4.8508E-05	0.241	0.00012538	520.2563289923019	26.11	0.46835	26.11	26	26.469	0					22	9	3	0	0	0	0.0030642	1	9192	9192		168.26	90.941	1	5412100			4336	5200	2399	2416	4418	4418					-0.01952028178720866
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.256591796875	2	520.256371	1038.49819	1.623	0.00084438	-2.6359	-0.0013714	-1.0129	-0.00052699	520.254905479231	26.142	0.51875	26.142	26.034	26.553	0					24	10	4	0	0	0	0.0055674	1	9185	9185		155.58	77.321	1	2235600			4337	5200	2399	2416	4419	4419					-0.01952028178720866
ATIEELTEK	9	Unmodified	_ATIEELTEK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2745361328125	2	517.274229	1032.53391	1.3616	0.00070434	-1.1888	-0.00061496	0.17279	8.9377E-05	517.2738758950624	30.75	0.27669	30.75	30.677	30.954	0					13	11	2	0	0	0	0.21263	1	9821	9821		60.118	17.644	1	102890			4338	5298	2400	2417	4420	4420					0.018940092782941065
ATIEELTEK	9	Unmodified	_ATIEELTEK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2742309570312	2	517.274229	1032.53391	1.2893	0.00066691	-0.99232	-0.0005133	0.29697	0.00015361	517.2738053239292	31.095	0.54721	31.095	30.877	31.424	0					20	11	3	0	0	0	0.076532	1	11230	11230		85.862	34.526	1	564750			4339	5298	2400	2417	4421	4421					0.018940092782941065
ATIEELTEK	9	Unmodified	_ATIEELTEK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2742919921875	2	517.274229	1032.53391	0.97089	0.00050222	-0.58756	-0.00030393	0.38333	0.00019829	517.2739413758162	31.004	0.29303	31.004	30.909	31.202	0					11	6	3	0	0	0	0.0047071	1	11661	11661		159.28	59.901	1	548390			4340	5298	2400	2417	4422	4422					0.018940092782941065
ATIEELTEK	9	Unmodified	_ATIEELTEK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2747192382812	2	517.274229	1032.53391	1.2038	0.00062271	-0.4908	-0.00025388	0.71303	0.00036883	517.2744247172824	30.783	0.12081	30.783	30.7	30.821	0					5	3	2	0	0	0	0.02953	1	10528	10528		109.48	35.223	1	53887			4341	5298	2400	2417	4423	4423					0.018940092782941065
ATIEELTEK	9	Unmodified	_ATIEELTEK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2743530273438	2	517.274229	1032.53391	0.21932	0.00011345	-0.020448	-1.0577E-05	0.19887	0.00010287	517.2742141520282	30.986	0.45968	30.986	30.731	31.19	0					15	9	3	0	0	0	0.012936	1	11520	11520		134.77	47.069	1	621930			4342	5298	2400	2417	4424	4424					0.018940092782941065
ATIEETYSK	9	Unmodified	_ATIEETYSK_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1;FCHO1|p.A50V|1|0.36|ENSG00000130475|chr19:17764404-17764404|C/T|missense_variant	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2594604492188	2	521.258579	1040.50261	1.4936	0.00077856	-0.32926	-0.00017163	1.1643	0.00060693	521.258384915875	23.784	0.21378	23.784	23.691	23.905	0					21	8	3	0	0	0	0.047855	1	6926	6926		96.034	41.269	1	449070			4343	3644	2401	2418	4425	4425					-0.016025637558186645
ATIEETYSK	9	Unmodified	_ATIEETYSK_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1;FCHO1|p.A50V|1|0.36|ENSG00000130475|chr19:17764404-17764404|C/T|missense_variant	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2584228515625	2	521.258579	1040.50261	1.0825	0.00056424	-0.49712	-0.00025913	0.58534	0.00030512	521.2582996534003	24.02	0.26516	24.02	23.915	24.18	0					15	5	4	0	0	0	0.014413	1	8341	8341		131.62	78.265	1	1876200			4344	3644	2401	2418	4426	4426					-0.016025637558186645
ATIEETYSK	9	Unmodified	_ATIEETYSK_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1;FCHO1|p.A50V|1|0.36|ENSG00000130475|chr19:17764404-17764404|C/T|missense_variant	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.25927734375	2	521.258579	1040.50261	1.4419	0.00075159	0.20967	0.00010929	1.6515	0.00086088	521.258549179715	23.867	0.18905	23.867	23.76	23.949	0					12	4	4	0	0	0	0.012936	1	7342	7342		134.77	52.461	1	348970			4345	3644	2401	2418	4427	4427					-0.016025637558186645
ATIEETYSK	9	Unmodified	_ATIEETYSK_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1;FCHO1|p.A50V|1|0.36|ENSG00000130475|chr19:17764404-17764404|C/T|missense_variant	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2586669921875	2	521.258579	1040.50261	1.0421	0.00054318	-0.42526	-0.00022167	0.6168	0.00032151	521.2584185671701	23.851	0.18941	23.851	23.747	23.937	0					10	4	3	0	0	0	0.061298	1	7339	7339		91.265	46.734	1	407770			4346	3644	2401	2418	4428	4428					-0.016025637558186645
ATIEETYSK	9	Unmodified	_ATIEETYSK_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1;FCHO1|p.A50V|1|0.36|ENSG00000130475|chr19:17764404-17764404|C/T|missense_variant	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2586059570312	2	521.258579	1040.50261	0.38132	0.00019877	-0.20496	-0.00010684	0.17637	9.1932E-05	521.2584059215861	23.989	0.36586	23.989	23.88	24.246	0					23	7	4	0	0	0	0.0055674	1	8222	8222		155.58	84.289	1	4621000			4347	3644	2401	2418	4429	4429					-0.016025637558186645
ATIENSRIV	9	Unmodified	_ATIENSRIV_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.78240966796875	2	501.782556	1001.55056	0.60587	0.00030401	-0.65437	-0.00032835	-0.048503	-2.4338E-05	501.78207409409384	20.677	0.10551	20.677	20.625	20.731	0					4	2	2	0	0	0	0.53083	1	6465	6465		29.15	1.2673	1	71075		+	4348	635	2402	2419	4430	4430					0.04984554954921805
ATIENSRIVLQ	11	Unmodified	_ATIENSRIVLQ_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.2382507324219	3	415.238343	1242.6932	1.0406	0.00043209	-0.18587	-7.718E-05	0.85472	0.00035491	415.2386293762593	30.17	0.32884	30.17	30.087	30.416	0					19	8	3	0	0	0	0.69983	1	10863	10863		27.644	2.5179	1	465810		+	4349	635	2403	2420	4431	4431					0.08156142626285146
ATIHALHFL	9	Unmodified	_ATIHALHFL_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.531982421875	3	341.53091	1021.5709	1.5537	0.00053065	1.0179	0.00034765	2.5717	0.0008783	341.53142884869965	34.437	0.40681	34.437	34.327	34.734	0					16	8	4	0	0	0	0.54267	1	13211	13211		27.882	3.6795	1	322450			4350	4583	2404	2421	4432	4432					0.06097770405369829
ATIHALHFL	9	Unmodified	_ATIHALHFL_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.5319519042969	3	341.53091	1021.5709	3.023	0.0010325	-0.11961	-4.0852E-05	2.9034	0.00099161	341.5309044056784	34.462	0.65142	34.462	34.212	34.864	0					27	13	4	0	0	0	0.41113	1	13228	13228		40.778	20.781	1	573750			4351	4583	2404	2421	4433	4433					0.06097770405369829
ATIKDGKSLTK	11	Unmodified	_ATIKDGKSLTK_					0	0	0		nc|ENSG00000166411|P50213-2|IDH3A;ENSG00000166411|ENST00000299518|IDH3A	nc|ENSG00000166411|P50213-2|IDH3A	nc|ENSG00000166411|P50213-2|IDH3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.8995056152344	3	387.899439	1160.67649	0.86104	0.000334	-0.97294	-0.0003774	-0.11191	-4.3408E-05	387.899132152969	16.744	0.29015	16.744	16.662	16.952	0					9	7	2	0	0	0	0.13158	1	4609	4609		82.494	41.414	1	1051000			4352	5897	2405	2422	4434	4434					0.1025764174030428
ATIKDGKSLTK	11	Unmodified	_ATIKDGKSLTK_					0	0	0		nc|ENSG00000166411|P50213-2|IDH3A;ENSG00000166411|ENST00000299518|IDH3A	nc|ENSG00000166411|P50213-2|IDH3A	nc|ENSG00000166411|P50213-2|IDH3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.3460083007812	2	581.34552	1160.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.505	1	16.505	16.005	17.005	0								0	0	0	0.36199	1	3974	3974		34.087	16.618	1				4353	5897	2405	2422	4435	4435					0.1025764174030428
ATIKLDFVDKQ	11	Unmodified	_ATIKLDFVDKQ_					0	0	0			REV__VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	REV__VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.5757141113281	3	426.574844	1276.7027	0.27692	0.00011813	1.6135	0.00068827	1.8904	0.0008064	426.57550502955354	21.137	0.078457	21.137	21.067	21.145	0					4	2	2	0	0	0	0.34891	1	5771	5771		57.149	4.9816	1	159450	+		4354	14535	2406	2423	4436	4436					0.0754191091177745
ATIKLDFVDKQ	11	Unmodified	_ATIKLDFVDKQ_					0	0	0			REV__VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	REV__VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.57659912109375	3	426.574844	1276.7027	3.3262	0.0014189	-1.1059	-0.00047175	2.2203	0.00094714	426.57441664258033	21.173	0.10723	21.173	21.102	21.209	0					8	3	3	0	0	0	0.42065	1	6030	6030		50.034	11.28	1	133280	+		4355	14535	2406	2423	4437	4437					0.0754191091177745
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	376.9043273925781	3	376.904413	1127.69141	0.5124	0.00019313	-0.77854	-0.00029344	-0.26614	-0.00010031	376.90407981938563	31.02	0.13079	31.02	30.947	31.077	0					9	5	2	0	0	0	0.33569	1	9941	9941		58.63	3.9073	1	149000			4356	6247	2407	2424	4438	4438					0.13267133608314907
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8535766601562	2	564.852981	1127.69141	0.1686	9.5237E-05	0.41831	0.00023629	0.58692	0.00033152	564.8532621973973	31.253	0.31346	31.253	31.157	31.471	0					15	7	3	0	0	0	0.00013565	1	11757	11757		139.38	58.927	1	708810			4357	6247	2407	2424	4439	4439					0.13267133608314907
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.904296875	3	376.904413	1127.69141	-0.12768	-4.8125E-05	0.16282	6.1369E-05	0.035138	1.3244E-05	376.90442374593385	31.059	0.12735	31.059	30.99	31.117	0					6	3	2	0	0	0	0.35352	1	10652	10652		56.632	15.206	1	72150			4358	6247	2407	2424	4440	4440					0.13267133608314907
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.9044189453125	3	376.904413	1127.69141	-0.40914	-0.0001542	0.26909	0.00010142	-0.14004	-5.2783E-05	376.9044747304985	31.233	0.31101	31.233	31.126	31.437	0					13	6	3	0	0	0	0.12878	1	11664	11664		82.831	34.871	1	490030			4359	6247	2407	2424	4441	4441					0.13267133608314907
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.904541015625	3	376.904413	1127.69141	0.70299	0.00026496	-1.0241	-0.000386	-0.32114	-0.00012104	376.90405663653365	31.267	0.41321	31.267	31.157	31.571	0					19	8	4	0	0	0	0.17294	1	11658	11658		77.533	22.811	1	910860			4360	6247	2407	2424	4442	4442					0.13267133608314907
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.2323303222656	3	372.23253	1113.67576	0.49569	0.00018451	-0.73684	-0.00027428	-0.24115	-8.9766E-05	372.2321760068807	27.849	0.21675	27.849	27.782	27.998	0					18	7	3	0	0	0	0.050009	1	8630	8630		105.17	52.998	1	1082700			4361	6075;3126	2408	2425	4443	4443					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.845947265625	2	557.845156	1113.67576	-0.48322	-0.00026956	1.056	0.00058907	0.57275	0.0003195	557.8457225093849	27.9	0.20486	27.9	27.782	27.987	0					20	7	4	0	0	0	7.0367E-05	1	8921	8921		133.75	77.319	1	1323900			4362	6075;3126	2408	2425	4444	4444					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8455200195312	2	557.845156	1113.67576	-0.17259	-9.6278E-05	0.6921	0.00038608	0.51951	0.00028981	557.8454925689088	28.12	0.38495	28.12	27.98	28.365	0					22	8	4	0	0	0	3.5544E-12	1	10252	10252		196.52	69.056	1	7801200			4363	6075;3126	2408	2425	4445	4445					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.2328186035156	3	372.23253	1113.67576	0.33327	0.00012405	-0.21404	-7.9672E-05	0.11923	4.4381E-05	372.56661990004534	27.932	0.21886	27.932	27.838	28.057	0					12	5	3	0	0	0	0.054579	1	9190	9190		102.95	6.9211	1	190530			4364	6075;3126	2408	2425	4446	4446					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.2325439453125	3	372.23253	1113.67576	-0.11874	-4.4198E-05	-0.075794	-2.8213E-05	-0.19453	-7.2411E-05	372.23247095414587	27.956	0.2877	27.956	27.828	28.115	0					18	7	5	0	0	0	0.084685	1	9187	9187		93.442	35.196	1	693520			4365	6075;3126	2408	2425	4447	4447					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.2324523925781	3	372.23253	1113.67576	-0.29866	-0.00011117	0.087155	3.2442E-05	-0.2115	-7.8727E-05	372.2325532827203	28.066	0.36773	28.066	27.959	28.327	0					24	7	5	0	0	0	0.023577	1	10111	10111		118.23	36.708	1	5073400			4366	6075;3126	2408	2425	4448	4448					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.2323913574219	3	372.23253	1113.67576	0.77449	0.00028829	-0.85632	-0.00031875	-0.081821	-3.0457E-05	372.23219319229776	28.051	0.51767	28.051	27.943	28.46	0					31	10	5	0	0	0	0.063263	1	10126	10126		98.754	43.67	1	7519100			4367	6075;3126	2408	2425	4449	4449					0.12346847091271229
ATILAGTANVK	11	Unmodified	_ATILAGTANVK_					0	0	0		nc|ENSG00000066455|Q8TBA6-2|GOLGA5;GOLGA5|p.M705Ifs*10|1|0.1|ENSG00000066455|chr14:92837439-92837440|-/TA|frameshift_variant;ENSG00000066455|ENST00000163416|GOLGA5	nc|ENSG00000066455|Q8TBA6-2|GOLGA5	nc|ENSG00000066455|Q8TBA6-2|GOLGA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.8132934570312	2	529.813856	1057.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.763	1	28.763	28.263	29.263	0								0	0	0	0.23351	1	9009	9009		59.931	11.971	1				4368	1394	2409	2426	4450	4450					0.0866570102307378
ATILGKREE	9	Unmodified	_ATILGKREE_					0	0	0			REV__GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	REV__GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.79241943359375	2	508.790381	1015.56621	1.327	0.00067518	2.6345	0.0013404	3.9615	0.0020156	508.79165324249533	43.554	0.19273	43.554	43.443	43.636	0					11	6	2	0	0	0	0.25761	1	17413	17413		31.53	0	1	167080	+		4369	15038	2410	2427	4451	4451					0.059048414719427456
ATIMGVRFK	9	Unmodified	_ATIMGVRFK_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7941589355469	2	511.794412	1021.57427	0.0010762	5.5079E-07	0.17045	8.7237E-05	0.17153	8.7788E-05	511.7943809925244	34.489	0.17289	34.489	34.4	34.573	0					8	4	2	0	0	0	0.28504	1	12857	12857		36.447	0.82846	1	215350			4370	1915	2411	2428	4452	4452					0.0643469718771712
ATIMGVRFK	9	Unmodified	_ATIMGVRFK_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.79425048828125	2	511.794412	1021.57427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.317	1	34.317	33.817	34.817	0								0	0	0	0.23111	1	11568	11568		31.53	0	1				4371	1915	2411	2428	4453	4453					0.0643469718771712
ATIMGVRFK	9	Unmodified	_ATIMGVRFK_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7947082519531	2	511.794412	1021.57427	-0.4452	-0.00022785	0.63989	0.00032749	0.19469	9.964E-05	511.79482437094265	34.52	0.43277	34.52	34.399	34.832	0					23	11	3	0	0	0	0.032383	1	13305	13305		90.37	37.018	1	787000			4372	1915	2411	2428	4454	4454					0.0643469718771712
ATIMSGSKAK	10	Unmodified	_ATIMSGSKAK_					0	0	0		nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-4|PRC1	nc|ENSG00000198901|O43663-4|PRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2731018066406	2	497.273509	992.532466	-1.3667	-0.00067962	1.396	0.00069417	0.029256	1.4548E-05	497.2740955484741	15.905	0.073058	15.905	15.855	15.928	0					6	3	2	0	0	0	0.36432	1	3710	3710		47.96	23.44	1	109740			4373	7637	2412	2429	4455	4455					0.03590096708546753
ATINGGLRR	9	Unmodified	_ATINGGLRR_					0	0	0		ENST00000486616.5_1_3:38047918-38048543:+|nuORF;nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL	ENST00000486616.5_1_3:38047918-38048543:+|nuORF	ENST00000486616.5_1_3:38047918-38048543:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2829895019531	2	479.283057	956.551562	-0.47023	-0.00022537	0.011311	5.4213E-06	-0.45892	-0.00021995	479.28308760480814	19.151	0.21311	19.151	19.05	19.264	0					9	4	3	0	0	0	0.03984	1	5995	5995		99.375	19.924	1	503950			4374	4051	2413	2430	4456	4456					0.0715481411446035
ATINNPNLLTK	11	Unmodified	_ATINNPNLLTK_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	600.3450317382812	2	599.843145	1197.67174	0.14021	8.4106E-05	0.52256	0.00031346	0.66278	0.00039756	599.8434698662021	31.183	0.22927	31.183	31.086	31.316	0					15	9	3	0	0	0	0.32196	1	9996	9996		60.167	10.631	1	154770			4375	766	2414	2431	4457	4457					0.08080757597554111
ATINNPNLLTK	11	Unmodified	_ATINNPNLLTK_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.8433227539062	2	599.843145	1197.67174	-0.12694	-7.6143E-05	0.48847	0.00029301	0.36153	0.00021686	599.8433328283888	31.449	0.41557	31.449	31.28	31.696	0					24	10	4	0	0	0	0.045275	1	11455	11455		107.45	38.609	1	677620			4376	766	2414	2431	4458	4458					0.08080757597554111
ATINNPNLLTK	11	Unmodified	_ATINNPNLLTK_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.8433227539062	2	599.843145	1197.67174	1.0184	0.00061087	-0.23773	-0.0001426	0.78066	0.00046827	599.8427530610455	31.431	0.49644	31.431	31.126	31.622	0					27	11	4	0	0	0	0.018969	1	11861	11861		120.63	42.367	1	843110			4377	766	2414	2431	4459	4459					0.08080757597554111
ATINNPNLLTK	11	Unmodified	_ATINNPNLLTK_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.8435668945312	2	599.843145	1197.67174	0.22121	0.00013269	-0.12193	-7.3142E-05	0.099272	5.9548E-05	599.8431568324576	31.407	0.19745	31.407	31.316	31.513	0					7	4	2	0	0	0	0.39337	1	11856	11856		52.167	7.79	1	93253			4378	766	2414	2431	4460	4460					0.08080757597554111
ATINNPNLLTK	11	Unmodified	_ATINNPNLLTK_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	599.8432006835938	2	599.843145	1197.67174	3.1295	0.0018772	-2.1091	-0.0012651	1.0204	0.00061207	599.8413873649266	31.394	1.005	31.394	30.995	32	0					44	20	4	0	0	0	0.0010046	1	11746	11746		133.75	45.575	1	1020400			4379	766	2414	2431	4461	4461					0.08080757597554111
ATIQCARLQ	9	Unmodified	_ATIQCARLQ_					0	0	0			REV__UPF1|p.R255C|1|0.52|ENSG00000005007|chr19:18850821-18850821|C/T|missense_variant	REV__UPF1|p.R255C|1|0.52|ENSG00000005007|chr19:18850821-18850821|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2718811035156	2	502.271301	1002.52805	-0.52269	-0.00026253	1.3543	0.00068022	0.8316	0.00041769	502.27228266987026	24.685	0.34914	24.685	24.58	24.929	0					15	7	4	0	0	0	0.27249	1	8559	8559		52.937	3.4007	1	533020	+		4380	22261	2415	2432	4462	4462					0.02688632285617132
ATIQEMRLK	9	Oxidation (M)	_ATIQEM(Oxidation (M))RLK_		ATIQEM(1)RLK		ATIQEM(49)RLK	0	0	1		ENST00000263636.4_1_2:160690662-160692029:-|nuORF	ENST00000263636.4_1_2:160690662-160692029:-|nuORF	ENST00000263636.4_1_2:160690662-160692029:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.2060241699219	3	369.205986	1104.59613	0.76762	0.00028341	-0.90842	-0.0003354	-0.14081	-5.1987E-05	369.2056536629017	16.944	0.093803	16.944	16.858	16.952	0					6	2	3	0	0	0	0.30951	1	4689	4689		49.442	16.629	1	284620			4381	8320	2416	2433	4463	4463		335			0.0480145714561786
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.75616455078125	2	475.756341	949.498129	-0.11928	-5.675E-05	-0.72993	-0.00034727	-0.84921	-0.00040402	475.7561047566374	22.719	0.71487	22.719	22.614	23.329	0					42	14	6	0	0	0	0.00324	3	7739	7719;7739;7912		167.23	63.172	1	29307000			4382	2587	2417	2434	4464;4465;4466	4465					0.021360166119393398
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.756103515625	2	475.756341	949.498129	-0.071232	-3.3889E-05	-0.50755	-0.00024147	-0.57878	-0.00027536	475.7560866099252	22.627	0.49016	22.627	22.529	23.019	0					27	11	4	0	0	0	5.4201E-05	1	6761	6761		195.06	78.16	1	6261800			4383	2587	2417	2434	4467	4467					0.021360166119393398
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.756103515625	2	475.756341	949.498129	-0.40132	-0.00019093	-0.25196	-0.00011987	-0.65327	-0.0003108	475.7561927493082	22.61	0.48637	22.61	22.517	23.003	0					30	11	5	0	0	0	0.015496	1	6756	6756		129.42	44.506	1	5601500			4384	2587	2417	2434	4468	4468					0.021360166119393398
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.75604248046875	2	475.756341	949.498129	-0.61755	-0.0002938	-0.4649	-0.00022118	-1.0825	-0.00051498	475.7560816027507	22.747	0.81285	22.747	22.638	23.451	0					47	16	5	0	0	0	5.4201E-05	2	7596	7596;7768		195.06	79.569	1	50820000			4385	2587	2417	2434	4469;4470	4469					0.021360166119393398
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7562561035156	2	475.756341	949.498129	0.75948	0.00036133	-1.5063	-0.00071665	-0.74687	-0.00035533	475.7557812367082	22.73	0.66265	22.73	22.622	23.284	0					42	13	5	0	0	0	5.293E-08	1	7612	7612		209.84	76.027	1	28620000			4386	2587	2417	2434	4471	4471					0.021360166119393398
ATIQNETPK	9	Unmodified	_ATIQNETPK_					0	0	0		ENST00000535919.1_1_11:95512769-95516347:-|nuORF;nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.26666259765625	2	501.266739	1000.51892	0.94013	0.00047125	-0.8395	-0.00042081	0.10063	5.0441E-05	501.2661912277376	19.472	0.51023	19.472	19.066	19.576	0					33	10	4	0	0	0	0.0071744	1	6148	6148		148.69	50.061	1	1539900			4387	1584	2418	2435	4472	4472					0.018685622009456893
ATIRNVLREK	10	Unmodified	_ATIRNVLREK_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-4|PI4KAP2	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.5789794921875	3	400.578811	1198.7146	0.064701	2.5918E-05	-0.22536	-9.0275E-05	-0.16066	-6.4357E-05	400.5788257470299	22.477	0.26077	22.477	22.367	22.628	0					11	5	3	0	0	0	0.42408	1	7623	7623		53.597	14.883	1	267220			4388	7942	2419	2436	4473	4473					0.12319572445630911
ATIRNVLREK	10	Unmodified	_ATIRNVLREK_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-4|PI4KAP2	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.5787353515625	3	400.578811	1198.7146	-0.60917	-0.00024402	0.1519	6.0847E-05	-0.45727	-0.00018317	400.57899562168774	22.498	0.16853	22.498	22.387	22.555	0					8	3	3	0	0	0	0.44292	1	7500	7500		51.528	7.1506	1	747210			4389	7942	2419	2436	4474	4474					0.12319572445630911
ATIRRIDQL	9	Unmodified	_ATIRRIDQL_					0	0	0		SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant;ENSG00000138449|ENST00000261024|SLC40A1	SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.5525817871094	3	362.552374	1084.63529	0.38907	0.00014106	-0.058728	-2.1292E-05	0.33034	0.00011977	362.5522779936174	33.398	0.14258	33.398	33.337	33.479	0					7	4	2	0	0	0	0.54267	1	11723	11723		27.882	0.83493	1	80218			4390	4263	2420	2437	4475	4475					0.09635925491511443
ATIRTTKWE	9	Unmodified	_ATIRTTKWE_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.3048095703125	2	553.303655	1104.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.726	1	16.726	16.226	17.226	0								0	0	0	0.20989	1	4025	4025		26.693	0	1				4391	5081	2421	2438	4476	4476					0.04464530363270569
ATIRVLEAIQK	11	Unmodified	_ATIRVLEAIQK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.5907897949219	3	414.590717	1240.75032	1.0354	0.00042929	-1.5633	-0.00064815	-0.52789	-0.00021886	414.59024292684086	34.537	0.20905	34.537	34.493	34.702	0					10	5	3	0	0	0	0.10641	1	12888	12888		88.134	48.076	1	137750			4392	6160	2422	2439	4477	4477					0.13957609902649892
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.8920593261719	3	377.892173	1130.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.527	1	27.527	27.027	28.027	0								0	0	0	0.3963	1	8495	8495		31.634	3.0575	1				4393	3724	2423	2440	4478	4478					0.09458836991734643
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.8922119140625	3	377.892173	1130.65469	0.81189	0.00030681	-0.69626	-0.00026311	0.11563	4.3695E-05	377.8918864593145	27.754	0.23064	27.754	27.706	27.936	0					12	5	4	0	0	0	0.58996	1	9741	9741		35.496	3.8614	1	562520			4394	3724	2423	2440	4479	4479					0.09458836991734643
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3353271484375	2	566.334621	1130.65469	0.25807	0.00014615	0.75543	0.00042783	1.0135	0.00057398	566.3349739983239	27.788	0.14102	27.788	27.692	27.833	0					8	3	3	0	0	0	0.37253	1	9758	9758		47.228	4.3634	1	284740			4395	3724	2423	2440	4480	4480					0.09458836991734643
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	378.2268371582031	3	377.892173	1130.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.235	1	28.235	27.735	28.735	0								0	0	0	0.4201	1	9083	9083		22.58	0	1				4396	3724	2423	2440	4481	4481					0.09458836991734643
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.3352661132812	2	566.334621	1130.65469	0.13131	7.4367E-05	0.68268	0.00038662	0.81399	0.00046099	566.3350566929382	27.558	0.12298	27.558	27.468	27.591	0					9	4	3	0	0	0	0.15441	1	8784	8784		73.841	32.415	1	142750			4397	3724	2423	2440	4482	4482					0.09458836991734643
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.8921813964844	3	377.892173	1130.65469	0.60957	0.00023035	-0.62426	-0.0002359	-0.014684	-5.549E-06	377.891904374388	27.756	0.26539	27.756	27.649	27.915	0					13	5	4	0	0	0	0.50639	1	10103	10103		44.639	2.3969	1	881400			4398	3724	2423	2440	4483	4483					0.09458836991734643
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.3348999023438	2	566.334621	1130.65469	1.9229	0.001089	-1.0998	-0.00062283	0.82317	0.00046619	566.3340154062032	27.756	0.2174	27.756	27.697	27.915	0					8	4	3	0	0	0	0.011606	1	10105	10105		115.23	57.002	1	711980			4399	3724	2423	2440	4484	4484					0.09458836991734643
ATITDKELLK	10	Unmodified	_ATITDKELLK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.8919677734375	3	377.892173	1130.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.73	1	27.73	27.23	28.23	0								0	0	0	0.17777	1	9958	9958		66.92	20.463	1				4400	3724	2423	2440	4485	4485					0.09458836991734643
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.59039306640625	3	420.590494	1258.74965	0.42614	0.00017923	-0.8763	-0.00036857	-0.45017	-0.00018934	420.5901356913921	23.185	0.2387	23.185	23.107	23.346	0					11	6	3	0	0	0	0.067676	1	6666	6666		97.597	55.259	1	298600			4401	3724	2424	2441	4486	4486					0.13062770462920525
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	630.3823852539062	2	630.382103	1258.74965	0.19472	0.00012275	0.014282	9.0028E-06	0.209	0.00013175	630.3821233576592	23.18	0.15969	23.18	23.1	23.26	0					8	4	3	0	0	0	0.24228	1	6673	6673		68.626	22.169	1	109080			4402	3724	2424	2441	4487	4487					0.13062770462920525
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.59063720703125	3	420.590494	1258.74965	3.4	0.00143	-4.3206	-0.0018172	-0.92055	-0.00038717	420.58892014086956	24.335	0.10474	24.335	24.29	24.395	0					6	3	2	0	0	0	0.69983	1	7439	7439		27.644	1.5805	1	73093			4403	3724	2424	2441	4488	4488					0.13062770462920525
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.5903015136719	3	420.590494	1258.74965	-0.086502	-3.6382E-05	-0.26664	-0.00011215	-0.35314	-0.00014853	420.5903042570697	23.421	0.26619	23.421	23.312	23.578	0					18	5	5	0	0	0	0.086726	1	8076	8076		92.943	35.058	1	3143900			4404	3724	2424	2441	4489	4489					0.13062770462920525
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.5907287597656	3	420.590494	1258.74965	0.11746	4.9401E-05	0.25784	0.00010845	0.3753	0.00015785	420.5906057875935	23.275	0.15343	23.275	23.173	23.326	0					6	3	2	0	0	0	0.071119	1	7086	7086		96.756	44.588	1	377190			4405	3724	2424	2441	4490	4490					0.13062770462920525
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.5903625488281	3	420.590494	1258.74965	-0.31616	-0.00013298	0.13946	5.8658E-05	-0.1767	-7.4318E-05	420.59050755845476	23.418	0.41588	23.418	23.284	23.7	0					25	8	5	0	0	0	0.079044	1	7935	7935		94.82	36.19	1	4517100			4406	3724	2424	2441	4491	4491					0.13062770462920525
ATITDKEMLKK	11	Unmodified	_ATITDKEMLKK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.57586669921875	3	426.575968	1276.70607	0.88877	0.00037913	-1.1346	-0.00048399	-0.24582	-0.00010486	426.57554898607253	21.451	0.22894	21.451	21.35	21.579	0					11	5	3	0	0	0	0.34233	1	6824	6824		57.885	21.358	1	1166300			4407	154	2425	2442	4492	4492					0.07878837694147478
ATITDKEMLKK	11	Unmodified	_ATITDKEMLKK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.57568359375	3	426.575968	1276.70607	-0.44573	-0.00019014	-0.019381	-8.2676E-06	-0.46511	-0.00019841	426.5759310285327	21.333	0.16754	21.333	21.273	21.441	0					8	3	3	0	0	0	0.10057	1	7069	7069		89.561	27.395	1	1122600			4408	154	2425	2442	4493	4493					0.07878837694147478
ATITDKEMLKK	11	Unmodified	_ATITDKEMLKK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	639.3602294921875	2	639.360313	1276.70607	-0.39962	-0.0002555	0.028089	1.7959E-05	-0.37153	-0.00023754	639.3604855140429	21.349	0.11657	21.349	21.29	21.407	0					4	2	2	0	0	0	0.00095468	1	7079	7079		128.35	54.093	1	502480			4409	154	2425	2442	4494	4494					0.07878837694147478
ATITDKEMLKK	11	Unmodified	_ATITDKEMLKK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.5755920410156	3	426.575968	1276.70607	0.16274	6.9422E-05	-1.2252	-0.00052265	-1.0625	-0.00045323	426.57553479982636	21.23	0.10985	21.23	21.168	21.278	0					6	2	3	0	0	0	0.51117	1	6126	6126		43.419	0	1	118530			4410	154	2425	2442	4495	4495					0.07878837694147478
ATITDKEMLKK	11	Unmodified	_ATITDKEMLKK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.5758361816406	3	426.575968	1276.70607	-0.39616	-0.00016899	-0.0041647	-1.7765E-06	-0.40033	-0.00017077	426.57598090737605	21.347	0.16616	21.347	21.288	21.454	0					9	3	3	0	0	0	0.052273	1	6945	6945		104.07	31.974	1	2024900			4411	154	2425	2442	4496	4496					0.07878837694147478
ATITERGITSR	11	Unmodified	_ATITERGITSR_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.2266845703125	3	402.226326	1203.65715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.997	1	22.997	22.497	23.497	0								0	0	0	0.42918	1	6589	6589		30.569	2.9249	1				4412	908	2426	2443	4497	4497					0.06346685449420875
ATITERGITSR	11	Unmodified	_ATITERGITSR_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.8359985351562	2	602.835851	1203.65715	0.14541	8.7658E-05	0.46409	0.00027977	0.6095	0.00036743	602.8362256363987	22.966	0.16456	22.966	22.868	23.033	0					7	5	2	0	0	0	0.39748	1	6570	6570		50.034	26.511	1	88875			4413	908	2426	2443	4498	4498					0.06346685449420875
ATITERGITSR	11	Unmodified	_ATITERGITSR_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.2264709472656	3	402.226326	1203.65715	0.051759	2.0819E-05	0.13179	5.301E-05	0.18355	7.3829E-05	402.2263719968153	23.178	0.16744	23.178	23.111	23.279	0					7	3	3	0	0	0	0.35352	1	7956	7956		56.632	19.124	1	316680			4414	908	2426	2443	4499	4499					0.06346685449420875
ATITERGITSR	11	Unmodified	_ATITERGITSR_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.2264709472656	3	402.226326	1203.65715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.078	1	23.078	22.578	23.578	0								0	0	0	0.37035	1	6983	6983		42.338	10.704	1				4415	908	2426	2443	4500	4500					0.06346685449420875
ATITERGITSR	11	Unmodified	_ATITERGITSR_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.22625732421875	3	402.226326	1203.65715	-0.59647	-0.00023992	0.4383	0.00017629	-0.15818	-6.3622E-05	402.2265277263681	23.191	0.16751	23.191	23.084	23.252	0					11	3	4	0	0	0	0.2472	1	7839	7839		68.626	33.448	1	466090			4416	908	2426	2443	4501	4501					0.06346685449420875
ATITKVLQK	9	Unmodified	_ATITKVLQK_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.D1312G|1|0.12|ENSG00000130589|chr20:63564887-63564887|T/C|missense_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.3211975097656	2	501.321317	1000.62808	-0.044785	-2.2452E-05	-0.0051654	-2.5895E-06	-0.049951	-2.5041E-05	501.32119588541934	23	0.17716	23	22.907	23.084	0					15	6	3	0	0	0	3.2654E-05	1	6579	6579		200.16	90.037	1	996070			4417	3651	2427	2444	4502	4502					0.12779192891082403
ATITKVLQK	9	Unmodified	_ATITKVLQK_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.D1312G|1|0.12|ENSG00000130589|chr20:63564887-63564887|T/C|missense_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.32098388671875	2	501.321317	1000.62808	-0.10855	-5.4419E-05	-0.059614	-2.9886E-05	-0.16817	-8.4305E-05	501.32111654284745	23.349	0.31697	23.349	23.21	23.526	0					17	7	4	0	0	0	0.0012088	1	7704	7704		180.87	46.059	1	4097500			4418	3651	2427	2444	4503	4503					0.12779192891082403
ATITKVLQK	9	Unmodified	_ATITKVLQK_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.D1312G|1|0.12|ENSG00000130589|chr20:63564887-63564887|T/C|missense_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3212890625	2	501.321317	1000.62808	-1.0281	-0.00051539	0.66117	0.00033146	-0.36688	-0.00018393	501.32166258225794	23.063	0.21888	23.063	22.96	23.179	0					14	7	3	0	0	0	0.0059092	1	6864	6864		154.12	43.998	1	510190			4419	3651	2427	2444	4504	4504					0.12779192891082403
ATITKVLQK	9	Unmodified	_ATITKVLQK_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.D1312G|1|0.12|ENSG00000130589|chr20:63564887-63564887|T/C|missense_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.5500183105469	3	334.54997	1000.62808	0.38423	0.00012854	-0.6417	-0.00021468	-0.25747	-8.6135E-05	334.5496405907872	23.266	0.26685	23.266	23.111	23.378	0					9	5	3	0	0	0	0.50858	1	7983	7983		46.457	17.287	1	158480			4420	3651	2427	2444	4505	4505					0.12779192891082403
ATITKVLQK	9	Unmodified	_ATITKVLQK_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.D1312G|1|0.12|ENSG00000130589|chr20:63564887-63564887|T/C|missense_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.32110595703125	2	501.321317	1000.62808	-0.57394	-0.00028773	0.3287	0.00016478	-0.24524	-0.00012295	501.32140656084835	23.238	0.3166	23.238	23.128	23.445	0					15	6	4	0	0	0	0.0012088	1	7988	7988		180.87	18.971	1	2807700			4421	3651	2427	2444	4506	4506					0.12779192891082403
ATITKVLQK	9	Unmodified	_ATITKVLQK_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.D1312G|1|0.12|ENSG00000130589|chr20:63564887-63564887|T/C|missense_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.54998779296875	3	334.54997	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.12	1	23.12	22.62	23.62	0								0	0	0	0.35899	1	7004	7004		45.972	24.286	1				4422	3651	2427	2444	4507	4507					0.12779192891082403
ATITTWQR	8	Unmodified	_ATITTWQR_					0	0	0			REV__nc|ENSG00000141441|Q9H706-2|GAREM1	REV__nc|ENSG00000141441|Q9H706-2|GAREM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7658386230469	2	488.764166	975.513779	2.6072	0.0012743	0.8739	0.00042713	3.4811	0.0017014	488.76465784579943	22.863	0.31328	22.863	22.755	23.069	0					15	6	4	0	0	0	0.43813	1	7678	7678		66.429	7.6473	1	1944000	+		4423	15115	2428	2445	4508	4508					0.02504303129001073
ATKERPHHHAG	11	Unmodified	_ATKERPHHHAG_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.2168884277344	3	414.214643	1239.6221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.737	1	14.737	14.237	15.237	0								0	0	0	0.38672	1	3655	3655		40.058	11.481	1				4424	6942	2429	2446	4509	4509					0.011874874321392781
ATKKGTAAPY	10	Unmodified	_ATKKGTAAPY_					0	0	0		ENST00000424556.2_1_11:1856509-1858658:+|nuORF;ENSG00000149043|ENST00000341958|SYT8	ENST00000424556.2_1_11:1856509-1858658:+|nuORF	ENST00000424556.2_1_11:1856509-1858658:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2790222167969	2	504.279649	1006.54475	1.0273	0.00051803	-2.341	-0.0011805	-1.3137	-0.00066249	504.2785980564163	42.462	0.16393	42.462	42.4	42.564	0					11	8	2	0	0	0	0.52275	1	16666	16666		42.864	7.7122	1	68281			4425	4856	2430	2447	4510	4510					0.041734564432204024
ATKKPAPEK	9	Unmodified	_ATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.29046630859375	2	485.290017	968.565481	0.6579	0.00031927	-0.63157	-0.00030649	0.026326	1.2776E-05	485.28965516679494	11.158	0.12334	11.158	11.075	11.199	0					17	6	3	0	0	0	0.011389	1	2126	2126		138.06	17.441	1	470400			4426	6489	2431	2448	4511	4511					0.07994046822898326
ATKKPAPEK	9	Unmodified	_ATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	323.86212158203125	3	323.862437	968.565481	0.53492	0.00017324	-1.0287	-0.00033317	-0.49382	-0.00015993	323.86219674756643	11.167	0.10493	11.167	11.07	11.175	0					9	5	2	0	0	0	0.19605	1	2124	2124		88.177	24.643	1	67973			4427	6489	2431	2448	4512	4512					0.07994046822898326
ATKKPAPEK	9	Unmodified	_ATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2903137207031	2	485.290017	968.565481	-0.09116	-4.4239E-05	-0.20154	-9.7804E-05	-0.2927	-0.00014204	485.28985415693285	11.21	0.18872	11.21	11.071	11.26	0					15	6	3	0	0	0	0.014413	1	2224	2224		131.62	43.862	1	1474100			4428	6489	2431	2448	4513	4513					0.07994046822898326
ATKKPAPEK	9	Unmodified	_ATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	323.8622741699219	3	323.862437	968.565481	0.55856	0.0001809	-0.52338	-0.0001695	0.035179	1.1393E-05	323.86218419569906	11.19	0.16614	11.19	11.081	11.247	0					13	5	3	0	0	0	0.10506	1	2227	2227		84.817	31.728	1	515750			4429	6489	2431	2448	4514	4514					0.07994046822898326
ATKKPAPEK	9	Unmodified	_ATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.29022216796875	2	485.290017	968.565481	-0.56777	-0.00027553	0.88171	0.00042789	0.31394	0.00015235	485.29048321393947	11.189	0.12757	11.189	11.106	11.233	0					17	7	3	0	0	0	0.022525	1	2138	2138		117.81	43.556	1	399410			4430	6489	2431	2448	4515	4515					0.07994046822898326
ATKKPAPEK	9	Unmodified	_ATKKPAPEK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.29022216796875	2	485.290017	968.565481	0.84567	0.00041039	0.084529	4.1021E-05	0.93019	0.00045141	485.2899598459681	11.191	0.09159	11.191	11.136	11.228	0					9	5	2	0	0	0	0.078509	1	2142	2142		85.161	0.2453	1	171030			4431	6489	2431	2448	4516	4516					0.07994046822898326
ATKKTKDSH	9	Unmodified	_ATKKTKDSH_					0	0	0		ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2814025878906	2	508.28018	1014.54581	-0.097861	-4.9741E-05	-2.3483	-0.0011936	-2.4462	-0.0012433	508.2791277231898	38.124	0.25772	38.124	38.01	38.268	0					34	15	3	0	0	0	0.27249	1	12432	12432		52.937	8.5595	1	284390			4432	4978	2432	2449	4517	4517					0.039116708121468946
ATKKTKDSH	9	Unmodified	_ATKKTKDSH_					0	0	0		ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.28143310546875	2	508.28018	1014.54581	-0.024492	-1.2449E-05	-2.4126	-0.0012263	-2.4371	-0.0012387	508.2790329453429	38.451	0.28551	38.451	38.325	38.61	0					30	9	5	0	0	0	0.087861	1	14587	14587		82.241	12.613	1	1400300			4433	4978	2432	2449	4518	4518					0.039116708121468946
ATKKTKDSH	9	Unmodified	_ATKKTKDSH_					0	0	0		ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.28179931640625	2	508.28018	1014.54581	-1.8911	-0.0009612	-0.98681	-0.00050158	-2.8779	-0.0014628	508.2797198965932	38.177	0.3008	38.177	38.078	38.378	0					37	15	4	0	0	0	0.10915	1	13645	13645		77.318	29.358	1	320740			4434	4978	2432	2449	4519	4519					0.039116708121468946
ATKLDEVVQ	9	Unmodified	_ATKLDEVVQ_					0	0	0			REV__DAAM2|p.P525Lfs*11|1|0.48|ENSG00000146122|chr6:39879202-39879202|C/-|frameshift_variant	REV__DAAM2|p.P525Lfs*11|1|0.48|ENSG00000146122|chr6:39879202-39879202|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7764587402344	2	501.776939	1001.53933	0.14375	7.2132E-05	-0.67743	-0.00033992	-0.53368	-0.00026779	501.77654496896247	28.107	0.09013	28.107	28.069	28.159	0					4	2	2	0	0	0	0.38666	1	9296	9296		42.864	0.46813	1	63375	+		4435	12664	2433	2450	4520	4520					0.03861732860775646
ATKLLCQEL	9	Unmodified	_ATKLLCQEL_					0	0	0			REV__ANKIB1|p.R617C|1|0.23|ENSG00000001629|chr7:92387984-92387984|C/T|missense_variant	REV__ANKIB1|p.R617C|1|0.23|ENSG00000001629|chr7:92387984-92387984|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7857360839844	2	509.78371	1017.55287	3.0277	0.0015434	0.74138	0.00037794	3.769	0.0019214	509.78417662402757	12.13	0.30846	12.13	12.04	12.349	0					12	9	3	0	0	0	0.13267	1	2516	2516		71.877	5.4482	1	2801700	+		4436	12157	2434	2451	4521	4521					0.04479267368344608
ATKNDNNQE	9	Unmodified	_ATKNDNNQE_					0	0	0			REV__ANKS1A|p.E150K|1|0.19|ENSG00000064999|chr6:34981702-34981702|G/A|missense_variant	REV__ANKS1A|p.E150K|1|0.19|ENSG00000064999|chr6:34981702-34981702|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2188720703125	2	517.230884	1032.44722	0.95607	0.00049451	-0.95502	-0.00049396	0.0010489	5.4251E-07	517.2303786990198	17.225	0.1699	17.225	17.115	17.285	0					6	3	2	0	0	0	0.53064	1	5044	5044		29.17	1.2878	1	228730	+		4437	12164	2435	2452	4522	4522					-0.06770977223573027
ATKPEVASIRR	11	Unmodified	_ATKPEVASIRR_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.9103088378906	3	409.910449	1226.70952	-0.088251	-3.6175E-05	-0.23555	-9.6555E-05	-0.3238	-0.00013273	409.91025037306855	20.699	0.24293	20.699	20.599	20.842	0					10	5	3	0	0	0	0.65378	1	5881	5881		32.034	1.4653	1	212010	+		4438	21032	2436	2453	4523	4523					0.10523268583006029
ATKQKSNSK	9	Unmodified	_ATKQKSNSK_					0	0	0		ENST00000267843.8_1_15:49715598-49716258:+|nuORF	ENST00000267843.8_1_15:49715598-49716258:+|nuORF	ENST00000267843.8_1_15:49715598-49716258:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.28082275390625	2	496.28018	990.545808	0.74017	0.00036733	0.61597	0.00030569	1.3561	0.00067302	496.28022648756814	11.196	0.14467	11.196	11.09	11.235	0					6	4	2	0	0	0	0.24095	1	2238	2238		56.721	12.604	1	142550			4439	8363	2437	2454	4524	4524					0.0501567081214489
ATKQRLDIR	9	Unmodified	_ATKQRLDIR_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.5560302734375	3	367.556007	1099.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.586	1	16.586	16.086	17.086	0								0	0	0	0.29356	1	3803	3803		36.447	9.3994	1		+		4440	13443	2438	2455	4525	4525					0.10035327865784893
ATKRLSQPAG	10	Unmodified	_ATKRLSQPAG_					0	0	0		ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;ENSG00000085978|ENST00000392017|ATG16L1	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.5330505371094	3	343.533091	1027.57744	0.67972	0.00023351	-0.45844	-0.00015749	0.22128	7.6017E-05	343.5328588664948	14.497	0.09423	14.497	14.456	14.55	0					4	2	2	0	0	0	0.69166	1	3554	3554		28.081	2.0181	1	326410			4441	248;1739	2439	2456	4526	4526					0.06475663566084222
ATKRRKKSGDL	11	Unmodified	_ATKRRKKSGDL_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34;FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.5903625488281	3	420.589599	1258.74697	1.0544	0.00044349	0.53098	0.00022332	1.5854	0.00066681	420.58977742849027	24.521	0.40709	24.521	24.364	24.771	0					18	8	4	0	0	0	0.54316	1	8460	8460		41.08	1.2069	1	4212400			4442	6745	2440	2457	4527	4527					0.12794359848658132
ATKSPAKPK	9	Unmodified	_ATKSPAKPK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2844543457031	2	464.284734	926.554916	-0.69528	-0.00032281	-0.18205	-8.4523E-05	-0.87733	-0.00040733	464.28469643632405	11.054	0.11134	11.054	10.984	11.096	0					10	6	2	0	0	0	0.16806	1	2096	2096		65.465	12.114	1	109260			4443	7010	2441	2458	4528	4528					0.08870064168468161
ATKSPAKPK	9	Unmodified	_ATKSPAKPK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2843017578125	2	464.284734	926.554916	0.69152	0.00032106	-0.87382	-0.0004057	-0.18231	-8.4643E-05	464.28424403343456	11.066	0.20274	11.066	10.934	11.137	0					17	8	3	0	0	0	0.048471	1	2157	2157		95.815	32.509	1	469730			4444	7010	2441	2458	4529	4529					0.08870064168468161
ATKSPAKPK	9	Unmodified	_ATKSPAKPK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2842712402344	2	464.284734	926.554916	-1.0654	-0.00049466	0.63648	0.00029551	-0.42894	-0.00019915	464.28497571209545	11.061	0.21413	11.061	10.944	11.158	0					17	8	3	0	0	0	0.35021	1	2154	2154		45.972	5.1941	1	476220			4445	7010	2441	2458	4530	4530					0.08870064168468161
ATKSPAKPK	9	Unmodified	_ATKSPAKPK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2848815917969	2	464.284734	926.554916	2.5999	0.0012071	-1.93	-0.00089606	0.66996	0.00031105	464.2838525544218	11.09	0.13471	11.09	10.981	11.116	0					12	8	2	0	0	0	0.27249	1	2113	2113		52.937	10.541	1	46209			4446	7010	2441	2458	4531	4531					0.08870064168468161
ATKVFQGVL	9	Unmodified	_ATKVFQGVL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7863464355469	2	481.78711	961.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.272	1	39.272	38.772	39.772	0								0	0	0	0.3368	1	14945	14945		27.882	1.1893	1				4447	7238	2442	2459	4532	4532					0.07734948311247081
ATKYLFGSHS	10	Unmodified	_ATKYLFGSHS_					0	0	0			REV__ENST00000465814.5_1_11:72407932-72423670:-|nuORF	REV__ENST00000465814.5_1_11:72407932-72423670:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.857421875	3	370.857463	1109.55056	0.42919	0.00015917	-0.47074	-0.00017458	-0.041554	-1.5411E-05	370.8572435683166	23.826	0.4096	23.826	23.721	24.131	0					22	9	4	0	0	0	0.63851	1	7949	7949		29.551	0.38069	1	2109000	+		4448	17086	2443	2460	4533	4533					0.00016554954913772235
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7900390625	2	471.790184	941.565815	-0.38898	-0.00018352	-0.36138	-0.0001705	-0.75036	-0.00035401	471.7900499004416	35.223	0.2899	35.223	35.113	35.403	0					37	14	4	0	0	0	0.078509	1	11520	11520		85.161	10.118	1	1059200			4449	5314	2444	2461	4534	4534					0.09269466542764349
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7900390625	2	471.790184	941.565815	-0.59558	-0.00028099	-0.10917	-5.1505E-05	-0.70475	-0.00033249	471.7901377870739	35.528	0.56978	35.528	35.372	35.942	0					38	15	4	0	0	0	0.014688	1	13300	13300		131.03	40.431	1	5544900			4450	5314	2444	2461	4535	4535					0.09269466542764349
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7902526855469	2	471.790184	941.565815	-1.4068	-0.00066369	1.1765	0.00055504	-0.23029	-0.00010865	471.7907670440319	35.289	0.25058	35.289	35.19	35.441	0					20	11	3	0	0	0	0.021961	1	11918	11918		118.74	36.438	1	431450			4451	5314	2444	2461	4536	4536					0.09269466542764349
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.78997802734375	2	471.790184	941.565815	-0.777	-0.00036658	0.60197	0.00028401	-0.17503	-8.2577E-05	471.79038602153935	35.284	0.25076	35.284	35.185	35.435	0					25	11	3	0	0	0	0.014688	1	11934	11934		131.03	17.62	1	1000400			4452	5314	2444	2461	4537	4537					0.09269466542764349
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7899169921875	2	471.790184	941.565815	0.58895	0.00027786	-1.256	-0.00059255	-0.66701	-0.00031469	471.7898100267364	35.521	0.37667	35.521	35.382	35.759	0					22	10	4	0	0	0	0.0071053	1	13748	13748		148.99	52.796	1	1444800			4453	5314	2444	2461	4538	4538					0.09269466542764349
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.79010009765625	2	471.790184	941.565815	-0.77304	-0.00036471	0.39927	0.00018837	-0.37377	-0.00017634	471.79032927943626	35.512	0.44893	35.512	35.37	35.818	0					30	12	4	0	0	0	0.0040894	1	13760	13760		162.25	43.509	1	2716900			4454	5314	2444	2461	4539	4539					0.09269466542764349
ATLAISSK	8	Unmodified	_ATLAISSK_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.7369384765625	2	395.737086	789.459619	-0.64657	-0.00025587	0.42579	0.0001685	-0.22078	-8.7371E-05	395.7372230736222	23.192	0.21713	23.192	23.084	23.301	0					9	4	3	0	0	0	0.44433	1	7840	7840		65.803	0	1	218010	+		4455	13028	2445	2462	4540	4540					0.056467109774303026
ATLAVTFAVA	10	Unmodified	_ATLAVTFAVA_					0	0	0			REV__ENSG00000176401|ENST00000326282|EID2B	REV__ENSG00000176401|ENST00000326282|EID2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.279052734375	2	482.279118	962.543683	0.69038	0.00033295	-0.91998	-0.00044369	-0.2296	-0.00011073	482.27879997363124	42.321	0.2048	42.321	42.26	42.465	0					20	10	3	0	0	0	0.39566	1	16606	16606		56.721	7.2795	1	118690	+		4456	16652	2446	2463	4541	4541					0.06091242074330694
ATLCIMII	8	Carbamidomethyl (C),Oxidation (M)	_ATLC(Carbamidomethyl (C))IM(Oxidation (M))II_	ATLC(1)IMII	ATLCIM(1)II	ATLC(75)IMII	ATLCIM(75)II	0	1	1			REV__DUOXA1|p.F31C|1|0.05|ENSG00000140254|chr15:45122923-45122923|A/C|missense_variant	REV__DUOXA1|p.F31C|1|0.05|ENSG00000140254|chr15:45122923-45122923|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7560729980469	2	475.756107	949.49766	0.62497	0.00029733	-0.58806	-0.00027977	0.03691	1.756E-05	475.7558185978979	22.751	0.56112	22.751	22.55	23.111	0					23	11	4	0	0	0	0.36926	1	7733	7733		74.517	74.517	1	6701000	+		4457	12748	2447	2464	4542	4542	502	491			0.020891375762403186
ATLCPAFAI	9	Unmodified	_ATLCPAFAI_					0	0	0		ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7396545410156	2	453.741314	905.468075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.027	1	14.027	13.527	14.527	0								0	0	0	0.34228	1	3549	3549		26.796	1.3459	1				4458	8142	2448	2465	4543	4543					0.011559416223917651
ATLCTFLHLV	10	Unmodified	_ATLCTFLHLV_					0	0	0			REV__ENST00000401533.6_1_2:26412041-26412347:+|nuORF	REV__ENST00000401533.6_1_2:26412041-26412347:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099609375	3	373.207327	1116.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.564	1	47.564	47.064	48.064	0								0	0	0	0.4201	1	18978	18978		22.58	0.89391	1		+		4459	18950	2449	2466	4544	4544					0.04651546639342996
ATLCYKAV	8	Carbamidomethyl (C)	_ATLC(Carbamidomethyl (C))YKAV_	ATLC(1)YKAV		ATLC(41)YKAV		0	1	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2435302734375	2	463.244221	924.473888	-2.4132	-0.0011179	1.2719	0.00058921	-1.1413	-0.00052868	463.2447682396418	31.625	0.23371	31.625	31.545	31.778	0					10	6	2	0	0	0	0.65276	1	10921	10921		40.573	10.069	1	74327			4460	6032	2450	2467	4545	4545	255				0.008630401340724347
ATLDEDIAK	9	Unmodified	_ATLDEDIAK_					0	0	0			REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.25250244140625	2	488.253297	974.492041	-0.079682	-3.8905E-05	-1.1979	-0.0005849	-1.2776	-0.0006238	488.252714692084	27.773	0.11806	27.773	27.713	27.831	0					4	2	2	0	0	0	0.25716	1	10114	10114		54.776	8.8041	1	82922	+		4461	15566	2451	2468	4546	4546					0.0037745358977190335
ATLDIDGVRK	10	Unmodified	_ATLDIDGVRK_					0	0	0		MPP5-GPHN|7|fusion;MPP5-GPHN|8|fusion;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN;MPP5-GPHN|1|fusion;MPP5-GPHN|2|fusion	MPP5-GPHN|7|fusion	MPP5-GPHN|7|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.20831298828125	3	363.208384	1086.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.187	1	27.187	26.687	27.687	0								0	0	0	0.29594	1	9821	9821		51.528	0.33506	1				4462	6314	2452	2469	4547	4547					0.06348513017701407
ATLDIDGVRK	10	Unmodified	_ATLDIDGVRK_					0	0	0		MPP5-GPHN|7|fusion;MPP5-GPHN|8|fusion;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN;MPP5-GPHN|1|fusion;MPP5-GPHN|2|fusion	MPP5-GPHN|7|fusion	MPP5-GPHN|7|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.3095703125	2	544.308938	1086.60332	0.32553	0.00017719	2.4969	0.0013591	2.8224	0.0015363	544.3095051059178	27.144	0.21438	27.144	27.039	27.254	0					8	4	3	0	0	0	0.27396	1	9813	9813		66.962	12.186	1	497480			4463	6314	2452	2469	4548	4548					0.06348513017701407
ATLDKHLRQK	10	Unmodified	_ATLDKHLRQK_					0	0	0		ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.90679931640625	3	403.906928	1208.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.13	1	16.13	15.63	16.63	0								0	0	0	0.10801	1	4403	4403		78.264	0.7305	1				4464	6253	2453	2470	4549	4549					0.10295285928600606
ATLDLNAVK	9	Unmodified	_ATLDLNAVK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7740478515625	2	472.7742	943.533846	0.22703	0.00010733	-0.33857	-0.00016007	-0.11154	-5.2735E-05	472.77403746008855	33.185	0.1529	33.185	33.119	33.272	0					7	4	2	0	0	0	0.15163	1	12246	12246		67.494	7.5629	1	273340			4465	1698	2454	2471	4550	4550					0.059820540689429436
ATLDLNAVK	9	Unmodified	_ATLDLNAVK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7738037109375	2	472.7742	943.533846	-0.57262	-0.00027072	0.2859	0.00013517	-0.28672	-0.00013555	472.77424009566215	33.159	0.2066	33.159	33.059	33.266	0					7	4	2	0	0	0	0.11898	1	12563	12563		75.043	23.851	1	322730			4466	1698	2454	2471	4551	4551					0.059820540689429436
ATLDVAVRR	9	Unmodified	_ATLDVAVRR_					0	0	0		HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.79852294921875	2	500.79854	999.582528	-0.12623	-6.3214E-05	-0.36567	-0.00018313	-0.4919	-0.00024634	500.7985066585734	24.308	0.45202	24.308	24.204	24.656	0					39	10	7	0	0	0	0.011389	1	8169	8169		134.81	47.056	1	11224000			4467	2027	2455	2472	4552	4552					0.08271967428709104
ATLDVAVRR	9	Unmodified	_ATLDVAVRR_					0	0	0		HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.79827880859375	2	500.79854	999.582528	-1.0602	-0.00053096	0.79931	0.00040029	-0.26093	-0.00013067	500.7989521899915	24.049	0.26982	24.049	23.979	24.249	0					26	8	6	0	0	0	0.04067	1	7294	7294		93.195	10.89	1	1486700			4468	2027	2455	2472	4553	4553					0.08271967428709104
ATLDVAVRR	9	Unmodified	_ATLDVAVRR_					0	0	0		HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.79840087890625	2	500.79854	999.582528	-0.59923	-0.0003001	0.24464	0.00012252	-0.35459	-0.00017758	500.7987134741695	24.286	0.41322	24.286	24.18	24.593	0					15	8	2	0	0	0	0.0067848	1	8467	8467		134.81	47.056	1	6410800			4469	2027	2455	2472	4554	4554					0.08271967428709104
ATLDVAVRR	9	Unmodified	_ATLDVAVRR_					0	0	0		HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	HDAC10|p.G498D|1|0.4|ENSG00000100429|chr22:50246896-50246896|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.20123291015625	3	334.201452	999.582528	-0.038646	-1.2915E-05	-0.22755	-7.6046E-05	-0.26619	-8.8962E-05	334.2013921543168	24.082	0.19518	24.082	23.994	24.189	0					13	4	4	0	0	0	0.4966	1	7446	7446		32.812	1.2826	1	504980			4470	2027	2455	2472	4555	4555					0.08271967428709104
ATLEDLVLL	9	Unmodified	_ATLEDLVLL_					0	0	0			REV__tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	REV__tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7925109863281	2	493.792058	985.569563	2.7794	0.0013725	-2.3237	-0.0011474	0.45572	0.00022503	493.79087666579875	49.481	0.10678	49.481	49.425	49.532	0					7	4	2	0	0	0	0.35045	1	19570	19570		45.952	5.3793	1	136110	+		4471	22219	2456	2473	4556	4556					0.07620091525961925
ATLEETLVKK	10	Unmodified	_ATLEETLVKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.2261657714844	3	377.892173	1130.65469	0.77918	0.00029445	-0.36569	-0.00013819	0.41349	0.00015625	377.8920877428555	28.462	0.17379	28.462	28.38	28.553	0					8	4	3	0	0	0	0.41384	1	10053	10053		54.722	14.664	1	163240			4472	8006	2457	2474	4557	4557					0.09458836991734643
ATLEETLVKK	10	Unmodified	_ATLEETLVKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3350219726562	2	566.334621	1130.65469	0.25667	0.00014536	0.63076	0.00035722	0.88742	0.00050258	566.3348219412966	28.444	0.20687	28.444	28.358	28.564	0					13	5	3	0	0	0	0.0026567	1	10055	10055		177.3	97.592	1	1006800			4473	8006	2457	2474	4558	4558					0.09458836991734643
ATLEETLVKK	10	Unmodified	_ATLEETLVKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.3356323242188	2	566.334621	1130.65469	-0.33076	-0.00018732	0.49114	0.00027815	0.16037	9.0824E-05	566.3349428440614	28.23	0.12284	28.23	28.139	28.262	0					7	4	2	0	0	0	0.53919	1	9072	9072		36.447	14.761	1	83587			4474	8006	2457	2474	4559	4559					0.09458836991734643
ATLEETLVKK	10	Unmodified	_ATLEETLVKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.8919982910156	3	377.892173	1130.65469	0.2343	8.854E-05	-0.45393	-0.00017154	-0.21963	-8.2997E-05	377.89195251699226	28.441	0.26587	28.441	28.331	28.597	0					11	5	3	0	0	0	0.16745	1	10430	10430		83.647	49.725	1	766110			4475	8006	2457	2474	4560	4560					0.09458836991734643
ATLEETLVKK	10	Unmodified	_ATLEETLVKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.3346557617188	2	566.334621	1130.65469	0.2411	0.00013654	0.22267	0.00012611	0.46377	0.00026265	566.3346424195767	28.457	0.26484	28.457	28.348	28.613	0					10	5	3	0	0	0	0.015306	1	10437	10437		117.53	77.468	1	616770			4476	8006	2457	2474	4561	4561					0.09458836991734643
ATLEETLVKK	10	Unmodified	_ATLEETLVKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.8920593261719	3	377.892173	1130.65469	-0.43285	-0.00016357	0.39586	0.00014959	-0.036991	-1.3979E-05	377.8922090180155	28.413	0.26505	28.413	28.261	28.526	0					13	5	4	0	0	0	0.54861	1	10304	10304		40.058	4.9061	1	741880			4477	8006	2457	2474	4562	4562					0.09458836991734643
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.59039306640625	3	420.590494	1258.74965	0.42658	0.00017942	-0.93645	-0.00039386	-0.50986	-0.00021444	420.59003911966573	24.312	0.15813	24.312	24.249	24.407	0					12	5	3	0	0	0	0.54316	1	7152	7152		41.08	17.702	1	488800			4478	8006	2458	2475	4563	4563					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	630.3823852539062	2	630.382103	1258.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.324	1	24.324	23.824	24.824	0								0	0	0	0.23991	1	7163	7163		66.962	25.535	1				4479	8006	2458	2475	4564	4564					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.5905456542969	3	420.590494	1258.74965	1.0516	0.00044228	-0.90511	-0.00038068	0.14647	6.1602E-05	420.59012610383434	24.576	0.71438	24.576	24.45	25.164	0					22	17	2	0	0	0	0.18862	1	8284	8284		75.652	32.234	1	4780700			4480	8006	2458	2475	4565	4565					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	630.3818359375	2	630.382103	1258.74965	1.1977	0.00075499	-1.274	-0.00080311	-0.076328	-4.8116E-05	630.3811409952898	24.57	0.17888	24.57	24.478	24.656	0					9	4	3	0	0	0	0.10057	1	8294	8294		101.46	37.926	1	549300			4481	8006	2458	2475	4566	4566					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.5903015136719	3	420.590494	1258.74965	-0.086179	-3.6246E-05	-0.4417	-0.00018578	-0.52788	-0.00022202	420.59027521215245	24.564	0.21369	24.564	24.463	24.677	0					13	4	4	0	0	0	0.080725	1	8602	8602		94.409	42.242	1	1159100			4482	8006	2458	2475	4567	4567					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	630.3825073242188	2	630.382103	1258.74965	-0.12485	-7.8704E-05	0.39907	0.00025157	0.27422	0.00017286	630.3822604896476	24.537	0.11597	24.537	24.477	24.593	0					4	2	2	0	0	0	0.12207	1	8612	8612		85.862	22.328	1	209640			4483	8006	2458	2475	4568	4568					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.5904846191406	3	420.590494	1258.74965	0.11896	5.0034E-05	-0.90062	-0.00037879	-0.78166	-0.00032876	420.59019868053593	24.382	0.14252	24.382	24.312	24.455	0					10	3	4	0	0	0	0.76133	1	7597	7597		21.78	1.4654	1	144420			4484	8006	2458	2475	4569	4569					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.59051513671875	3	420.590494	1258.74965	-0.038344	-1.6127E-05	-0.32937	-0.00013853	-0.36771	-0.00015466	420.59036176560096	24.392	0.13764	24.392	24.301	24.439	0					11	3	4	0	0	0	0.39337	1	7607	7607		52.167	28.789	1	267990			4485	8006	2458	2475	4570	4570					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.5904541015625	3	420.590494	1258.74965	-0.31604	-0.00013293	0.19724	8.2957E-05	-0.11881	-4.9968E-05	420.5905129500068	24.539	0.35902	24.539	24.38	24.739	0					20	7	5	0	0	0	0.45905	1	8466	8466		47.228	9.7195	1	2761200			4486	8006	2458	2475	4571	4571					0.13062770462920525
ATLEIVTDK	9	Unmodified	_ATLEIVTDK_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2793273925781	2	495.279315	988.544076	-0.40777	-0.00020196	0.25348	0.00012555	-0.15428	-7.6414E-05	495.2793819428555	31.636	0.30409	31.636	31.518	31.822	0					12	7	2	0	0	0	0.090954	1	11532	11532		81.525	13.04	1	374120			4487	3186	2459	2476	4572	4572					0.049346170035164505
ATLELPLAMLR	11	Unmodified	_ATLELPLAMLR_					0	0	0			REV__ENST00000343534.9_1_1:112020844-112021090:+|nuORF	REV__ENST00000343534.9_1_1:112020844-112021090:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.9106140136719	3	409.90917	1226.70568	2.9829	0.0012227	0.41587	0.00017047	3.3988	0.0013932	409.9093770209765	20.819	0.46788	20.819	20.658	21.126	0					21	9	3	0	0	0	0.60833	1	6686	6686		36.318	7.7409	1	7224900	+		4488	18467	2460	2477	4573	4573					0.10139462764959717
ATLENAPPQD	10	Unmodified	_ATLENAPPQD_					0	0	0		nc|ENSG00000181781|Q3SX64-2|CIMAP1D	nc|ENSG00000181781|Q3SX64-2|CIMAP1D	nc|ENSG00000181781|Q3SX64-2|CIMAP1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2561645507812	2	528.253828	1054.4931	1.6295	0.00086078	2.5259	0.0013343	4.1554	0.0021951	528.2555886810708	31.216	0.60802	31.216	30.913	31.521	0					31	12	4	0	0	0	0.46128	1	11686	11686		49.536	1.8787	1	337740			4489	11667	2461	2478	4574	4574					-0.03196332041329697
ATLEQAHQAL	10	Unmodified	_ATLEQAHQAL_					0	0	0		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2868041992188	2	541.285463	1080.55637	0.10126	5.4811E-05	1.8738	0.0010142	1.975	0.001069	541.2865279602939	16.969	0.20002	16.969	16.831	17.031	0					18	8	3	0	0	0	0.36647	1	4142	4142		39.253	0	1	407340			4490	5658	2462	2479	4575	4575					0.01931653466544958
ATLERLKK	8	Unmodified	_ATLERLKK_					0	0	0		nc|ENSG00000091436|Q9NYL2-2|MAP3K20;ENSG00000091436|ENST00000375213|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.8052673339844	2	479.805834	957.597115	0.022913	1.0994E-05	-0.96109	-0.00046114	-0.93818	-0.00045014	479.80547623864334	12.628	0.073545	12.628	12.592	12.666	0					6	4	2	0	0	0	0.3049	1	2413	2413		82.241	2.5279	1	81886			4491	11450	2463	2480	4576	4576					0.11662039576845018
ATLESIQRK	9	Unmodified	_ATLESIQRK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3042602539062	2	523.303655	1044.59276	0.76945	0.00040266	-0.16063	-8.4059E-05	0.60882	0.0003186	523.3035665884236	20.405	0.097561	20.405	20.335	20.433	0					5	3	2	0	0	0	0.15163	1	5450	5450		67.494	3.2864	1	105800			4492	4274	2464	2481	4577	4577					0.07224530363282611
ATLETILRH	9	Unmodified	_ATLETILRH_					0	0	0		ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant;ENSG00000184677|ENST00000375647|ZBTB40	ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant	ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.87310791015625	3	351.873224	1052.59784	0.70389	0.00024768	-0.873	-0.00030719	-0.16911	-5.9506E-05	351.8729989214988	34.005	0.23483	34.005	33.881	34.116	0					12	6	3	0	0	0	0.5654	1	12624	12624		40.778	13.731	1	233430			4493	7031	2465	2482	4578	4578					0.07364834225904815
ATLEVSSIIK	10	Unmodified	_ATLEVSSIIK_					0	0	0		ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant	ENSG00000242247|ENST00000263245|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.816650390625	2	530.816064	1059.61758	0.72672	0.00038575	0.52162	0.00027688	1.2483	0.00066264	530.8161602047551	39.892	0.23592	39.892	39.752	39.987	0					8	5	2	0	0	0	0.30252	1	15786	15786		66.962	8.732	1	166670			4494	7945	2466	2483	4579	4579					0.09015165445998718
ATLFASASSAV	11	Unmodified	_ATLFASASSAV_					0	0	0			REV__ENSG00000140931|ENST00000567572|CMTM3	REV__ENSG00000140931|ENST00000567572|CMTM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7694702148438	2	512.769114	1023.52368	-0.27745	-0.00014227	1.0914	0.00055962	0.81392	0.00041735	512.7695806359587	17.958	0.16658	17.958	17.831	17.998	0					12	4	4	0	0	0	0.3865	1	4618	4618		52.937	6.4799	1	498880	+		4495	15095	2467	2484	4580	4580					0.012854463437065533
ATLGAILNR	9	Unmodified	_ATLGAILNR_					0	0	0		nc|ENSG00000156515|P19367-2|HK1;nc|ENSG00000156515|P19367-4|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;HK1|p.R398H|1|0.04|ENSG00000156515|chr10:69380023-69380023|G/A|missense_variant	nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7805480957031	2	464.782359	927.550165	-0.6882	-0.00031986	-2.3811	-0.0011067	-3.0693	-0.0014265	464.7811631958679	36.282	0.37343	36.282	36.123	36.496	0					21	10	3	0	0	0	0.023928	1	13658	13658		115.49	16.865	1	1286300			4496	11597	2468	2485	4581	4581					0.08349180025709302
ATLGAILNR	9	Unmodified	_ATLGAILNR_					0	0	0		nc|ENSG00000156515|P19367-2|HK1;nc|ENSG00000156515|P19367-4|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;HK1|p.R398H|1|0.04|ENSG00000156515|chr10:69380023-69380023|G/A|missense_variant	nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7824401855469	2	464.782359	927.550165	-0.77512	-0.00036026	0.095863	4.4555E-05	-0.67926	-0.00031571	464.78240462731867	36.049	0.19736	36.049	35.966	36.163	0					15	8	2	0	0	0	0.24095	1	12191	12191		56.721	12.604	1	183760			4497	11597	2468	2485	4582	4582					0.08349180025709302
ATLGAILNR	9	Unmodified	_ATLGAILNR_					0	0	0		nc|ENSG00000156515|P19367-2|HK1;nc|ENSG00000156515|P19367-4|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;HK1|p.R398H|1|0.04|ENSG00000156515|chr10:69380023-69380023|G/A|missense_variant	nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7818908691406	2	464.782359	927.550165	-2.3375	-0.0010864	0.91987	0.00042754	-1.4176	-0.00065888	464.78289381584716	36.055	0.20964	36.055	35.948	36.158	0					13	7	2	0	0	0	0.028876	1	12865	12865		110.12	8.5192	1	208480			4498	11597	2468	2485	4583	4583					0.08349180025709302
ATLGALLQK	9	Unmodified	_ATLGALLQK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.78729248046875	2	457.78711	913.559667	-0.40249	-0.00018426	0.037767	1.7289E-05	-0.36473	-0.00016697	457.78701579695513	36.339	0.11835	36.339	36.262	36.381	0					11	6	2	0	0	0	0.1115	1	11908	11908		76.774	20.053	1	91703			4499	4616	2469	2486	4584	4584					0.09942948311243072
ATLGALLQK	9	Unmodified	_ATLGALLQK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.78717041015625	2	457.78711	913.559667	-1.1242	-0.00051464	0.88687	0.000406	-0.23731	-0.00010864	457.787350232073	36.393	0.12077	36.393	36.31	36.431	0					11	6	2	0	0	0	0.19605	1	12316	12316		62.107	7.3311	1	122400			4500	4616	2469	2486	4585	4585					0.09942948311243072
ATLGALLQK	9	Unmodified	_ATLGALLQK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7867126464844	2	457.78711	913.559667	-0.65315	-0.000299	0.043488	1.9908E-05	-0.60966	-0.0002791	457.78712933836823	36.593	0.25258	36.593	36.489	36.741	0					15	7	3	0	0	0	0.01768	1	14252	14252		125.81	12.402	1	627790			4501	4616	2469	2486	4586	4586					0.09942948311243072
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.2394714355469	3	396.239573	1185.69689	0.90917	0.00036025	-0.84529	-0.00033494	0.063879	2.5311E-05	396.2391744141498	35.078	0.20958	35.078	34.993	35.203	0					11	5	3	0	0	0	0.64562	1	13140	13140		50.034	15.947	1	142350			4502	3578	2470	2487	4587	4587					0.11146812400102135
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.85595703125	2	593.855721	1185.69689	0.28284	0.00016797	0.46639	0.00027697	0.74923	0.00044494	593.8558576880749	35.112	0.13114	35.112	35.022	35.153	0					8	3	3	0	0	0	0.13158	1	13130	13130		82.494	23.865	1	142620			4503	3578	2470	2487	4588	4588					0.11146812400102135
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.239501953125	3	396.239573	1185.69689	0.099427	3.9397E-05	-0.17235	-6.8294E-05	-0.072928	-2.8897E-05	396.23944341615396	35.081	0.19738	35.081	35.004	35.202	0					7	5	2	0	0	0	0.58789	1	13578	13578		63.426	21.088	1	121660			4504	3578	2470	2487	4589	4589					0.11146812400102135
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.856689453125	2	593.855721	1185.69689	0.005276	3.1332E-06	1.5014	0.00089163	1.5067	0.00089477	593.8567741103984	35.098	0.1207	35.098	35.015	35.136	0					6	3	2	0	0	0	0.49446	1	13568	13568		44.639	16.558	1	104420			4505	3578	2470	2487	4590	4590					0.11146812400102135
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.2393798828125	3	396.239573	1185.69689	-0.6421	-0.00025442	0.56508	0.00022391	-0.077017	-3.0517E-05	396.23981440917663	35.039	0.26563	35.039	34.93	35.196	0					14	5	4	0	0	0	0.67178	1	13477	13477		55.084	29.958	1	996160			4506	3578	2470	2487	4591	4591					0.11146812400102135
ATLGLVDIVK	10	Unmodified	_ATLGLVDIVK_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.8215942382812	2	514.82115	1027.62775	1.4842	0.0007641	-1.4195	-0.00073079	0.064708	3.3313E-05	514.8205595021354	44.751	0.11586	44.751	44.706	44.822	0					8	5	2	0	0	0	0.3337	1	17930	17930		63.534	15.574	1	57633			4507	4582	2471	2488	4592	4592					0.1150377317121638
ATLGSGNLR	9	Unmodified	_ATLGSGNLR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B;MOB1B|p.A32T|1|0.31|ENSG00000173542|chr4:70958953-70958953|G/A|missense_variant;ENST00000511449.1_1_4:71768157-71863814:+|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.74853515625	2	444.748516	887.482479	0.59218	0.00026337	1.7155	0.00076299	2.3077	0.0010264	444.74950140478785	23.653	0.57918	23.653	23.444	24.024	0					25	13	4	0	0	0	0.19605	1	7872	7872		62.107	1.9892	1	1009900			4508	2874	2472	2489	4593	4593					0.034237300949030214
ATLGSGNLRQ	10	Unmodified	_ATLGSGNLRQ_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.777587890625	2	508.777805	1015.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.887	1	22.887	22.387	23.387	0								0	0	0	0.22047	1	6894	6894		61.691	12.155	1				4509	2874	2473	2490	4594	4594					0.033907866693766664
ATLHGSNMK	9	Unmodified	_ATLHGSNMK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|61|2|sense	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7416687011719	2	479.742376	957.4702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.33	1	15.33	14.83	15.83	0								0	0	0	0.22284	1	3320	3320		47.657	6.8792	1				4510	7612	2474	2491	4595	4595					-0.010236296397920341
ATLHGSNMK	9	Unmodified	_ATLHGSNMK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|61|2|sense	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.741943359375	2	479.742376	957.4702	0.4786	0.0002296	-1.1249	-0.00053966	-0.64629	-0.00031005	479.74176993121523	15.621	0.098202	15.621	15.571	15.669	0					4	2	2	0	0	0	0.47473	1	4084	4084		35.152	10.949	1	494430			4511	7612	2474	2491	4596	4596					-0.010236296397920341
ATLHGSNMK	9	Unmodified	_ATLHGSNMK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|61|2|sense	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7416076660156	2	479.742376	957.4702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.403	1	15.403	14.903	15.903	0								0	0	0	0.28666	1	3448	3448		37.812	7.3079	1				4512	7612	2474	2491	4597	4597					-0.010236296397920341
ATLHPSVVIA	10	Unmodified	_ATLHPSVVIA_					0	0	0		ENST00000410053.7_1_2:180810430-180815325:-|nuORF	ENST00000410053.7_1_2:180810430-180815325:-|nuORF	ENST00000410053.7_1_2:180810430-180815325:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2983703613281	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.567	1	29.567	29.067	30.067	0								0	0	0	0.38322	1	9963	9963		35.618	1.4457	1				4513	9308	2475	2492	4598	4598					0.07810333339944009
ATLHYLLS	8	Unmodified	_ATLHYLLS_					0	0	0			REV__ENSG00000104870|ENST00000221466|FCGRT	REV__ENSG00000104870|ENST00000221466|FCGRT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2596740722656	2	459.258185	916.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.007	1	34.007	33.507	34.507	0								0	0	0	1.7419	1	11101	11101		40.573	4.9543	1		+		4514	13739	2476	2493	4599	4599					0.04022686385815177
ATLIGLSIK	9	Unmodified	_ATLIGLSIK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2962951660156	2	458.29731	914.580068	0.72175	0.00033078	-1.983	-0.0009088	-1.2612	-0.00057803	458.2962989555569	41.61	0.072128	41.61	41.589	41.661	0					5	3	2	0	0	0	0.38666	1	16364	16364		42.864	7.246	1	54321			4515	5918	2477	2494	4600	4600					0.11936118971050291
ATLISNSK	8	Unmodified	_ATLISNSK_					0	0	0		ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.2400207519531	2	417.239993	832.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.902	1	22.902	22.402	23.402	0								0	0	0	1.7419	1	6901	6901		45.972	5.1941	1				4516	2994	2478	2495	4601	4601					0.04249809489101608
ATLISRGLE	9	Unmodified	_ATLISRGLE_					0	0	0		FANCG|p.A516T|1|0.16|ENSG00000221829|chr9:35075017-35075017|C/T|missense_variant	FANCG|p.A516T|1|0.16|ENSG00000221829|chr9:35075017-35075017|C/T|missense_variant	FANCG|p.A516T|1|0.16|ENSG00000221829|chr9:35075017-35075017|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2792053222656	2	480.279649	958.544745	-1.3861	-0.0006657	0.84036	0.00040361	-0.54571	-0.00026209	480.2799657075467	35.128	0.13488	35.128	35.082	35.217	0					11	6	2	0	0	0	0.21263	1	11868	11868		60.118	1.8883	1	132730			4517	11133	2479	2496	4602	4602					0.063814564432505
ATLKGHTKK	9	Unmodified	_ATLKGHTKK_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.3030090332031	2	492.303458	982.592364	-0.54881	-0.00027018	-0.011939	-5.8778E-06	-0.56075	-0.00027606	492.3034227846759	11.49	0.21787	11.49	11.436	11.653	0					16	8	3	0	0	0	0.029571	1	2218	2218		109.44	10.809	1	1085700			4518	2613	2480	2497	4603	4603					0.10037155434076794
ATLKGHTKK	9	Unmodified	_ATLKGHTKK_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.3031921386719	2	492.303458	982.592364	0.58558	0.00028828	-0.58837	-0.00028965	-0.0027875	-1.3723E-06	492.3031724681496	11.509	0.19773	11.509	11.465	11.663	0					9	5	3	0	0	0	0.11411	1	2382	2382		76.17	4.2922	1	504270			4519	2613	2480	2497	4604	4604					0.10037155434076794
ATLKTKSQTK	10	Unmodified	_ATLKTKSQTK_					0	0	0		INPP5D|p.E850Rfs*19|1|0.36|ENSG00000168918|chr2:233193909-233193909|G/-|frameshift_variant;nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	INPP5D|p.E850Rfs*19|1|0.36|ENSG00000168918|chr2:233193909-233193909|G/-|frameshift_variant	INPP5D|p.E850Rfs*19|1|0.36|ENSG00000168918|chr2:233193909-233193909|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3327026367188	2	553.332413	1104.65027	0.62419	0.00034538	-0.42373	-0.00023447	0.20045	0.00011092	553.3321259086879	12.212	0.10268	12.212	12.139	12.242	0					5	3	2	0	0	0	0.34979	1	2528	2528		61.765	25.318	1	267780			4520	6136	2481	2498	4605	4605					0.10213372568841805
ATLLASNEAFK	11	Unmodified	_ATLLASNEAFK_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.8179931640625	2	582.816596	1163.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.324	1	35.324	34.824	35.824	0								0	0	0	0.41351	1	11947	11947		34.087	7.3936	1				4521	7107	2482	2499	4606	4606					0.04337379814865017
ATLLASNEAFK	11	Unmodified	_ATLLASNEAFK_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.816650390625	2	582.816596	1163.61864	1.382	0.00080544	-1.6733	-0.00097522	-0.2913	-0.00016977	582.8157075601381	35.537	0.15366	35.537	35.459	35.613	0					8	4	2	0	0	0	0.035268	1	13788	13788		112.3	21.926	1	333380			4522	7107	2482	2499	4607	4607					0.04337379814865017
ATLLASNEAFK	11	Unmodified	_ATLLASNEAFK_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.8170776367188	2	582.816596	1163.61864	3.2289	0.0018819	-3.6796	-0.0021445	-0.45066	-0.00026265	582.8146684987153	35.458	0.27237	35.458	35.398	35.671	0					7	5	2	0	0	0	0.061126	1	13704	13704		99.788	39.67	1	289690			4523	7107	2482	2499	4608	4608					0.04337379814865017
ATLLGRRPP	9	Unmodified	_ATLLGRRPP_					0	0	0			REV__ENST00000492189.5_1_14:104029639-104053625:+|nuORF	REV__ENST00000492189.5_1_14:104029639-104053625:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.5381164550781	3	327.538176	979.592698	0.52926	0.00017335	-0.37818	-0.00012387	0.15108	4.9484E-05	327.5379970530361	17.793	0.35178	17.793	17.685	18.037	0					14	8	3	0	0	0	0.61124	1	5085	5085		25.574	6.4705	1	355240	+		4524	19540	2483	2500	4609	4609					0.10208575153933452
ATLLIFANK	9	Unmodified	_ATLLIFANK_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.80224609375	2	495.80276	989.590967	-0.062174	-3.0826E-05	-0.37649	-0.00018666	-0.43866	-0.00021749	495.8025371204767	44.161	0.32319	44.161	44.062	44.386	0					43	20	3	0	0	0	0.015338	1	13846	13846		129.68	35.676	1	484520			4525	7790	2484	2501	4610	4610					0.09575521345323068
ATLLIFANK	9	Unmodified	_ATLLIFANK_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.8022766113281	2	495.80276	989.590967	-0.37559	-0.00018622	0.1124	5.5727E-05	-0.2632	-0.00013049	495.8027762035637	44.435	0.45944	44.435	44.333	44.792	0					77	27	4	0	0	0	0.010494	2	16643	16643;16733		139.97	45.964	1	2374400			4526	7790	2484	2501	4611;4612	4611					0.09575521345323068
ATLLIFANK	9	Unmodified	_ATLLIFANK_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.80267333984375	2	495.80276	989.590967	-1.4875	-0.00073748	1.1236	0.00055708	-0.36387	-0.00018041	495.803227777713	44.214	0.13094	44.214	44.148	44.279	0					11	8	2	0	0	0	0.16002	1	14377	14377		66.429	2.222	1	134330			4527	7790	2484	2501	4613	4613					0.09575521345323068
ATLLIFANK	9	Unmodified	_ATLLIFANK_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.80267333984375	2	495.80276	989.590967	-0.76368	-0.00037864	0.52437	0.00025998	-0.23931	-0.00011865	495.8029562161372	44.448	0.35625	44.448	44.339	44.695	0					43	19	4	0	0	0	0.037569	1	17285	17285		101.6	2.2258	1	624580			4528	7790	2484	2501	4614	4614					0.09575521345323068
ATLLPVRWHA	10	Unmodified	_ATLLPVRWHA_					0	0	0			REV__NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	REV__NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.5596008300781	3	388.560981	1162.66111	-0.68895	-0.0002677	-1.3353	-0.00051885	-2.0243	-0.00078655	388.55990358387595	17.098	0.31415	17.098	16.844	17.158	0					16	6	4	0	0	0	0.59277	1	4884	4884		35.152	9.0886	1	349540	+		4529	16312	2485	2502	4615	4615					0.08628819733803539
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7774963378906	2	458.776742	915.538931	-0.95807	-0.00043954	0.94676	0.00043435	-0.011306	-5.1869E-06	458.7770658956535	28.51	0.24456	28.51	28.43	28.674	0					16	9	3	0	0	0	0.095583	1	9188	9188		80.455	24.95	1	205660			4530	1010	2486	2503	4616	4616					0.07778357931556457
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.77630615234375	2	458.776742	915.538931	-0.15762	-7.2314E-05	-0.18465	-8.4711E-05	-0.34227	-0.00015702	458.7766630561589	28.787	0.45881	28.787	28.628	29.087	0					28	9	4	0	0	0	3.3778E-05	1	10573	10573		199.89	86.48	1	22376000			4531	1010	2486	2503	4617	4617					0.07778357931556457
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7763977050781	2	458.776742	915.538931	0.72211	0.00033129	-1.4693	-0.00067406	-0.74715	-0.00034277	458.77607384603823	28.769	0.50087	28.769	28.661	29.162	0					21	10	4	0	0	0	0.021015	1	10590	10590		120.31	52.812	1	1491300			4532	1010	2486	2503	4618	4618					0.07778357931556457
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7765808105469	2	458.776742	915.538931	-0.05298	-2.4306E-05	-0.29033	-0.0001332	-0.34331	-0.0001575	458.776593626798	28.567	0.32719	28.567	28.453	28.78	0					26	8	5	0	0	0	0.011893	1	9475	9475		136.99	56.534	1	2687100			4533	1010	2486	2503	4619	4619					0.07778357931556457
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7760925292969	2	458.776742	915.538931	0.075167	3.4485E-05	-0.42353	-0.0001943	-0.34836	-0.00015982	458.7765007614416	28.561	0.4504	28.561	28.442	28.893	0					34	11	6	0	0	0	0.022698	1	9472	9472		117.53	34.775	1	2845000			4534	1010	2486	2503	4620	4620					0.07778357931556457
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7763366699219	2	458.776742	915.538931	-0.44271	-0.0002031	-0.40264	-0.00018472	-0.84535	-0.00038782	458.77657764948896	28.716	0.86669	28.716	28.558	29.424	0					38	17	4	0	0	0	0.00065248	1	10422	10422		186.41	84.81	1	30627000			4535	1010	2486	2503	4621	4621					0.07778357931556457
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7664489746094	2	481.766906	961.519259	0.044104	2.1248E-05	-1.1687	-0.00056303	-1.1246	-0.00054178	481.76625864753396	23.185	0.2387	23.185	23.107	23.346	0					14	6	3	0	0	0	0.01942	1	6663	6663		122.94	26.906	1	743280			4536	1779	2487	2504	4622	4622					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7663879394531	2	481.766906	961.519259	0.54531	0.00026271	-1.7159	-0.00082666	-1.1706	-0.00056395	481.7660259647601	23.491	0.49154	23.491	23.354	23.846	0					17	11	2	0	0	0	0.016146	1	7775	7775		128.35	32.314	1	6693000			4537	1779	2487	2504	4623	4623					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7666320800781	2	481.766906	961.519259	-1.3327	-0.00064205	0.71853	0.00034616	-0.61418	-0.00029589	481.76719577459335	23.249	0.25261	23.249	23.148	23.4	0					21	8	4	0	0	0	0.013298	1	6935	6935		133.99	53.539	1	1386400			4538	1779	2487	2504	4624	4624					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7665710449219	2	481.766906	961.519259	0.6891	0.00033199	-1.6401	-0.00079013	-0.95096	-0.00045814	481.76606283706195	23.436	0.41782	23.436	23.344	23.762	0					20	8	5	0	0	0	0.0019365	1	8069	8069		174.86	57.054	1	4523400			4539	1779	2487	2504	4625	4625					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.76678466796875	2	481.766906	961.519259	0.13132	6.3268E-05	-0.71407	-0.00034401	-0.58274	-0.00028075	481.7665543148359	23.275	0.24514	23.275	23.173	23.418	0					7	5	2	0	0	0	0.029172	1	7067	7067		109.83	48.138	1	162300			4540	1779	2487	2504	4626	4626					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7666015625	2	481.766906	961.519259	-0.28782	-0.00013866	-0.34087	-0.00016422	-0.62868	-0.00030288	481.76671538427524	23.258	0.23916	23.258	23.162	23.401	0					11	5	3	0	0	0	0.016146	1	7059	7059		128.35	47.893	1	1504900			4541	1779	2487	2504	4627	4627					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7664794921875	2	481.766906	961.519259	-0.62333	-0.0003003	-0.58642	-0.00028252	-1.2097	-0.00058282	481.76647923486627	23.393	0.41588	23.393	23.284	23.7	0					12	8	2	0	0	0	0.00054273	1	7936	7936		187.5	63.424	1	2184200			4542	1779	2487	2504	4628	4628					0.03695981920793656
ATLPDLKTMEK	11	Unmodified	_ATLPDLKTMEK_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.R392Afs*22|1|0.27|ENSG00000129566|chr14:20403743-20403743|G/-|frameshift_variant;TEP1|p.N507Efs*11|1|0.29|ENSG00000129566|chr14:20401014-20401015|-/C|frameshift_variant;TEP1|p.L888Wfs*31|1|0.45|ENSG00000129566|chr14:20387928-20387928|G/-|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.228515625	3	416.228568	1245.66387	1.0474	0.00043595	-1.0399	-0.00043284	0.0074714	3.1098E-06	416.22812820534716	33.221	0.27919	33.221	33.147	33.426	0					13	7	2	0	0	0	0.60833	1	12317	12317		36.318	4.6834	1	84614			4543	3603	2488	2505	4629	4629					0.050868622857706214
ATLPDLKTMEK	11	Unmodified	_ATLPDLKTMEK_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.R392Afs*22|1|0.27|ENSG00000129566|chr14:20403743-20403743|G/-|frameshift_variant;TEP1|p.N507Efs*11|1|0.29|ENSG00000129566|chr14:20401014-20401015|-/C|frameshift_variant;TEP1|p.L888Wfs*31|1|0.45|ENSG00000129566|chr14:20387928-20387928|G/-|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.2286376953125	3	416.228568	1245.66387	-0.3375	-0.00014048	0.3059	0.00012733	-0.031601	-1.3153E-05	416.2288721121086	33.212	0.44696	33.212	33.019	33.466	0					23	9	3	0	0	0	0.50799	1	12591	12591		43.651	7.3331	1	271880			4544	3603	2488	2505	4630	4630					0.050868622857706214
ATLPNQPVEK	10	Unmodified	_ATLPNQPVEK_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.8038940429688	2	548.803488	1095.59242	0.38423	0.00021087	0.29603	0.00016246	0.68026	0.00037333	548.8037904735129	23.771	0.13157	23.771	23.701	23.833	0					7	4	2	0	0	0	0.33468	1	7194	7194		63.426	8.7041	1	102950			4545	4391	2489	2506	4631	4631					0.04845110643418593
ATLPNQPVEK	10	Unmodified	_ATLPNQPVEK_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8040771484375	2	548.803488	1095.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.987	1	23.987	23.487	24.487	0								0	0	0	0.23291	1	8211	8211		60.167	5.3907	1				4546	4391	2489	2506	4632	4632					0.04845110643418593
ATLPNQVHRK	10	Unmodified	_ATLPNQVHRK_					0	0	0		ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENST00000477238.1_1_22:19707079-19707537:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000108387|O43236-2|SEPTIN4;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENSG00000108387|ENST00000672673|SEPTIN4	ENST00000577440.5_1_17:56598198-56609324:-|nuORF	ENST00000577440.5_1_17:56598198-56609324:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.5595397949219	3	388.55964	1162.65709	0.86518	0.00033618	-0.38522	-0.00014968	0.47997	0.0001865	388.55921071037915	17.141	0.29361	17.141	16.98	17.273	0					18	7	4	0	0	0	0.56063	1	4801	4801		38.754	3.6016	1	469890			4547	10840	2490	2507	4633	4633					0.0822673024008509
ATLPPITVTSK	11	Unmodified	_ATLPPITVTSK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.33740234375	2	564.337164	1126.65977	0.36942	0.00020848	0.12695	7.1643E-05	0.49637	0.00028012	564.337110097615	33.996	2.3774	33.996	33.869	36.247	0					224	62	5	0	0	0	0.084685	5	12593	12593;12747;12911;13069;13232		93.442	60.691	1	14951000			4548	1085	2491	2508	4634;4635;4636;4637;4638	4634					0.10151140854372898
ATLPPITVTSK	11	Unmodified	_ATLPPITVTSK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.3372802734375	2	564.337164	1126.65977	0.13501	7.6193E-05	0.35973	0.00020301	0.49475	0.0002792	564.3372503021588	33.78	2.2394	33.78	33.673	35.912	0					323	99	5	0	0	0	0.11438	5	11476	11329;11476;11612;11743;11877		86.189	52.267	1	8293200			4549	1085	2491	2508	4639;4640;4641;4642;4643	4640					0.10151140854372898
ATLPPITVTSK	11	Unmodified	_ATLPPITVTSK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.337158203125	2	564.337164	1126.65977	0.14287	8.0626E-05	0.38376	0.00021657	0.52663	0.00029719	564.3373666926773	33.989	0.6441	33.989	33.851	34.495	0					30	15	3	0	0	0	0.40021	1	13048	13048		51.528	18.777	1	371450			4550	1085	2491	2508	4644	4644					0.10151140854372898
ATLPPITVTSK	11	Unmodified	_ATLPPITVTSK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.3372802734375	2	564.337164	1126.65977	0.85916	0.00048485	-0.28248	-0.00015941	0.57668	0.00032544	564.3369153173944	33.776	2.1515	33.776	33.638	35.79	0					207	70	5	0	0	0	0.32407	5	12170	11855;12015;12170;12325;12479		59.931	28.126	1	5139300			4551	1085	2491	2508	4645;4646;4647;4648;4649	4647					0.10151140854372898
ATLQDQIEQFQ	11	Unmodified	_ATLQDQIEQFQ_					0	0	0			REV__ENSG00000196912|ENST00000359901|ANKRD36B	REV__ENSG00000196912|ENST00000359901|ANKRD36B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.8860778808594	3	440.885858	1319.63574	0.71734	0.00031627	-0.05115	-2.2551E-05	0.66619	0.00029371	440.8857854953754	15.69	0.46795	15.69	15.579	16.047	0					16	9	4	0	0	0	0.69004	1	4205	4205		28.577	2.685	1	609920	+		4552	17291	2492	2509	4650	4650					-0.011287443699757205
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.25604248046875	2	477.256174	952.497795	0.0092003	4.3909E-06	-0.57109	-0.00027255	-0.56189	-0.00026816	477.2558685875672	31.098	0.26991	31.098	30.966	31.236	0					25	10	4	0	0	0	0.01873	1	9954	9954		124.08	36.326	1	498870			4553	4171	2493	2510	4651	4651					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2564392089844	2	477.256174	952.497795	-1.4928	-0.00071245	1.1428	0.00054541	-0.35	-0.00016704	477.2566864710286	31.132	0.24792	31.132	31.034	31.282	0					18	9	3	0	0	0	0.063171	1	10278	10278		90.601	29.629	1	226420			4554	4171	2493	2510	4652	4652					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2558288574219	2	477.256174	952.497795	-0.11765	-5.615E-05	-0.47108	-0.00022483	-0.58874	-0.00028098	477.25592182277273	31.355	0.27129	31.355	31.267	31.538	0					17	6	4	0	0	0	0.0097668	1	11825	11825		141.52	48.325	1	1106300			4555	4171	2493	2510	4653	4653					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.255859375	2	477.256174	952.497795	0.6415	0.00030616	-1.1615	-0.00055432	-0.51997	-0.00024816	477.25557955672974	31.373	0.31469	31.373	31.257	31.572	0					21	7	4	0	0	0	0.00324	1	11820	11820		167.23	33.76	1	889570			4556	4171	2493	2510	4654	4654					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2558288574219	2	477.256174	952.497795	-0.031322	-1.4949E-05	-0.60605	-0.00028924	-0.63737	-0.00030419	477.25595007722615	31.113	0.2137	31.113	31.043	31.257	0					14	6	3	0	0	0	0.0071053	1	10671	10671		148.99	61.232	1	252220			4557	4171	2493	2510	4655	4655					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.25579833984375	2	477.256174	952.497795	-0.34305	-0.00016372	-0.13843	-6.6067E-05	-0.48148	-0.00022979	477.2560639446371	31.111	0.21101	31.111	31.032	31.243	0					19	6	4	0	0	0	0.012231	1	10666	10666		136.27	48.514	1	410050			4558	4171	2493	2510	4656	4656					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2557373046875	2	477.256174	952.497795	-0.63907	-0.000305	-0.033147	-1.582E-05	-0.67222	-0.00032082	477.2561945919811	31.328	0.31413	31.328	31.174	31.488	0					17	6	3	0	0	0	0.0040894	1	11688	11688		162.25	60.652	1	2653100			4559	4171	2493	2510	4657	4657					0.019645968920826817
ATLQLRQQK	9	Unmodified	_ATLQLRQQK_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.5524597167969	3	362.552374	1084.63529	0.28668	0.00010394	-0.28499	-0.00010333	0.0016862	6.1132E-07	362.5522342838303	33.582	0.24472	33.582	33.493	33.738	0					16	6	4	0	0	0	0.54267	1	12874	12874		27.882	0	1	615050			4560	6578	2494	2511	4658	4658					0.09635925491511443
ATLQMLRNPA	10	Unmodified	_ATLQMLRNPA_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.205810546875	3	372.206098	1113.59646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.757	1	14.757	14.257	15.257	0								0	0	0	0.4201	1	3190	3190		17.468	0	1				4561	6880	2495	2512	4659	4659					0.044208768654925734
ATLQNVLRK	9	Unmodified	_ATLQNVLRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.822509765625	2	521.822015	1041.62948	0.79811	0.00041647	0.42546	0.00022202	1.2236	0.00063849	521.8221195576893	25.706	0.10433	25.706	25.64	25.744	0					9	3	3	0	0	0	0.02953	1	7767	7767		71.877	0.58177	1	315450			4562	2528	2496	2513	4660	4660					0.11032826979840138
ATLQNVLRK	9	Unmodified	_ATLQNVLRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.822265625	2	521.822015	1041.62948	0.081098	4.2319E-05	-0.61606	-0.00032147	-0.53496	-0.00027915	521.8221561590769	25.989	0.3924	25.989	25.732	26.125	0					29	7	6	0	0	0	0.0079272	1	8918	8918		106.68	15.906	1	2262100			4563	2528	2496	2513	4661	4661					0.11032826979840138
ATLQNVLRK	9	Unmodified	_ATLQNVLRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.82275390625	2	521.822015	1041.62948	0.37291	0.00019459	0.43073	0.00022476	0.80364	0.00041936	521.8223830432095	25.729	0.11617	25.729	25.655	25.771	0					8	3	3	0	0	0	0.032383	1	8034	8034		79.713	18.741	1	354620			4564	2528	2496	2513	4662	4662					0.11032826979840138
ATLQNVLRK	9	Unmodified	_ATLQNVLRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.2171325683594	3	348.217102	1041.62948	0.33668	0.00011724	-0.43491	-0.00015144	-0.098235	-3.4207E-05	348.21697046481387	25.992	0.16606	25.992	25.885	26.051	0					11	3	4	0	0	0	0.53064	1	9237	9237		29.17	1.2878	1	1757000			4565	2528	2496	2513	4663	4663					0.11032826979840138
ATLQNVLRK	9	Unmodified	_ATLQNVLRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.822509765625	2	521.822015	1041.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.792	1	25.792	25.292	26.292	0								0	0	0	0.018495	1	8252	8252		75.043	0	1				4566	2528	2496	2513	4664	4664					0.11032826979840138
ATLQNVLRK	9	Unmodified	_ATLQNVLRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.8221435546875	2	521.822015	1041.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.942	1	25.942	25.442	26.442	0								0	0	0	0.014275	1	9104	9104		124.08	8.6211	1				4567	2528	2496	2513	4665	4665					0.11032826979840138
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.7961120605469	2	510.795466	1019.57638	1.0934	0.00055848	-0.04201	-2.1458E-05	1.0513	0.00053702	510.7954853905324	35.075	0.34222	35.075	34.969	35.311	0					28	15	3	0	0	0	0.012936	1	11489	11489		134.77	57.448	1	498990			4568	1726	2497	2514	4666	4666					0.06737449197180467
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7960510253906	2	510.795466	1019.57638	0.98521	0.00050324	-0.69744	-0.00035625	0.28777	0.00014699	510.795138645698	35.347	0.49375	35.347	35.228	35.722	0					31	13	3	0	0	0	0.015496	1	13241	13241		129.42	24.675	1	2436100			4569	1726	2497	2514	4667	4667					0.06737449197180467
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7966003417969	2	510.795466	1019.57638	0.36693	0.00018742	-0.033546	-1.7135E-05	0.33338	0.00017029	510.7954770831024	35.361	0.3328	35.361	35.258	35.591	0					26	9	4	0	0	0	0.0023831	1	13677	13677		172.25	84.552	1	1389400			4570	1726	2497	2514	4668	4668					0.06737449197180467
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.796875	2	510.795466	1019.57638	0.80028	0.00040878	0.92808	0.00047406	1.7284	0.00088284	510.79593201021106	35.133	0.3356	35.133	35.035	35.371	0					18	11	3	0	0	0	0.011389	1	12484	12484		138.06	63.807	1	318580			4571	1726	2497	2514	4669	4669					0.06737449197180467
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.79595947265625	2	510.795466	1019.57638	0.32289	0.00016493	0.06816	3.4816E-05	0.39105	0.00019975	510.7955474375496	35.118	0.27664	35.118	35.055	35.332	0					24	9	3	0	0	0	0.015496	1	12494	12494		129.42	24.675	1	439150			4572	1726	2497	2514	4670	4670					0.06737449197180467
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7958984375	2	510.795466	1019.57638	0.0062433	3.1891E-06	0.52656	0.00026896	0.5328	0.00027215	510.795875526573	35.288	0.42382	35.288	35.179	35.603	0					20	8	3	0	0	0	0.0023831	1	13596	13596		172.25	73.619	1	4384900			4573	1726	2497	2514	4671	4671					0.06737449197180467
ATLRKDYLV	9	Unmodified	_ATLRKDYLV_					0	0	0		nc|ENSG00000123130|Q9Y305-3|ACOT9;nc|ENSG00000123130|Q9Y305-2|ACOT9;nc|ENSG00000123130|Q9Y305|ACOT9;ENSG00000123130|ENST00000379303|ACOT9;ENST00000379297.5_1_X:23722013-23724857:-|nuORF	nc|ENSG00000123130|Q9Y305-3|ACOT9	nc|ENSG00000123130|Q9Y305-3|ACOT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.2135009765625	3	360.213358	1077.61824	-2.039	-0.00073449	2.1018	0.00075709	0.062727	2.2595E-05	360.2140438119235	18.269	0.12137	18.269	18.18	18.301	0					5	3	2	0	0	0	0.55379	1	4737	4737		26.693	1.1189	1	95134			4574	3300	2498	2515	4672	4672					0.08254004885679933
ATLRVVLKA	9	Unmodified	_ATLRVVLKA_					0	0	0		BICD1|p.A693V|1|0.12|ENSG00000151746|chr12:32328533-32328533|C/T|missense_variant	BICD1|p.A693V|1|0.12|ENSG00000151746|chr12:32328533-32328533|C/T|missense_variant	BICD1|p.A693V|1|0.12|ENSG00000151746|chr12:32328533-32328533|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.2182922363281	3	324.218443	969.633501	-0.70269	-0.00022783	0.40933	0.00013271	-0.29336	-9.5113E-05	324.2186084144485	22.85	0.33046	22.85	22.762	23.092	0					22	11	3	0	0	0	0.51817	1	6775	6775		37.812	14.289	1	241250			4575	297	2499	2516	4673	4673					0.14746916473552574
ATLSDLKTMEK	11	Unmodified	_ATLSDLKTMEK_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.R392Afs*22|1|0.27|ENSG00000129566|chr14:20403743-20403743|G/-|frameshift_variant;TEP1|p.N507Efs*11|1|0.29|ENSG00000129566|chr14:20401014-20401015|-/C|frameshift_variant;TEP1|p.L888Wfs*31|1|0.45|ENSG00000129566|chr14:20387928-20387928|G/-|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.8882141113281	3	412.888323	1235.64314	0.060048	2.4793E-05	-0.83144	-0.00034329	-0.77139	-0.0003185	412.8878980743522	29.776	0.21715	29.776	29.667	29.884	0					9	4	3	0	0	0	0.44025	1	11072	11072		48.602	12.284	1	255890			4576	3603	2500	2517	4674	4674					0.03474271906111426
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.79278564453125	2	494.792924	987.571294	-0.065361	-3.234E-05	-0.034311	-1.6977E-05	-0.099672	-4.9317E-05	494.7929089457217	21.798	0.14067	21.798	21.737	21.878	0					11	4	3	0	0	0	0.026848	1	6063	6063		95.815	13.575	1	511850			4577	5060	2501	2518	4675	4675					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.792724609375	2	494.792924	987.571294	-0.42668	-0.00021112	0.1278	6.3233E-05	-0.29888	-0.00014788	494.7930136962103	22.115	0.27741	22.115	22.017	22.295	0					15	6	4	0	0	0	0.0028263	1	7141	7141		154.12	40.707	1	2391000			4578	5060	2501	2518	4676	4676					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	330.19781494140625	3	330.197708	987.571294	3.677	0.0012141	-3.357	-0.0011085	0.32002	0.00010567	330.1963671424147	21.853	0.1189	21.853	21.756	21.874	0					5	3	2	0	0	0	0.50858	1	6342	6342		31.53	4.4825	1	42913			4579	5060	2501	2518	4677	4677					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7928466796875	2	494.792924	987.571294	-1.5724	-0.00077799	1.2812	0.00063393	-0.29114	-0.00014406	494.7935286564969	21.85	0.15406	21.85	21.766	21.92	0					7	4	2	0	0	0	0.021015	1	6328	6328		104.06	29.802	1	253340			4580	5060	2501	2518	4678	4678					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.1976318359375	3	330.197708	987.571294	0.3896	0.00012864	-0.5647	-0.00018646	-0.1751	-5.7819E-05	330.1974819576143	22.029	0.21286	22.029	21.924	22.136	0					11	4	3	0	0	0	0.35021	1	7405	7405		45.972	4.5456	1	1068300			4581	5060	2501	2518	4679	4679					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.79278564453125	2	494.792924	987.571294	-0.75704	-0.00037458	0.67743	0.00033519	-0.079604	-3.9388E-05	494.7932415595634	21.997	0.2142	21.997	21.939	22.153	0					11	4	4	0	0	0	0.0037134	1	7393	7393		148.99	17.955	1	1012800			4582	5060	2501	2518	4680	4680					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7929992675781	2	494.792924	987.571294	-2.4723	-0.0012233	2.7111	0.0013414	0.2388	0.00011815	494.79419048349206	21.896	0.28608	21.896	21.702	21.988	0					10	6	3	0	0	0	0.082776	1	6435	6435		77.318	10.888	1	413980			4583	5060	2501	2518	4681	4681					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.19769287109375	3	330.197708	987.571294	-0.00026234	-8.6626E-08	-0.029195	-9.6402E-06	-0.029457	-9.7268E-06	330.1976959919103	22.042	0.21924	22.042	21.936	22.156	0					11	4	3	0	0	0	0.40353	1	7262	7262		41.427	2.673	1	893120			4584	5060	2501	2518	4682	4682					0.07701145334556259
ATLSICSPK	9	Unmodified	_ATLSICSPK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;TRIM25|p.G621D|1|0.15|ENSG00000121060|chr17:56891731-56891731|C/T|missense_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2491149902344	2	460.249503	918.484453	-0.43612	-0.00020072	0.24865	0.00011444	-0.18747	-8.6285E-05	460.2494421780716	30.127	0.56633	30.127	29.81	30.377	0					49	20	3	0	0	0	0.25761	1	9483	9483		54.722	3.3869	1	382550			4585	3210	2502	2519	4683	4683					0.021950227884985907
ATLSICSPK	9	Unmodified	_ATLSICSPK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;TRIM25|p.G621D|1|0.15|ENSG00000121060|chr17:56891731-56891731|C/T|missense_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2491455078125	2	460.249503	918.484453	-0.68738	-0.00031637	0.52001	0.00023933	-0.16738	-7.7035E-05	460.24959464557526	30.373	0.87752	30.373	30.038	30.916	0					64	21	4	0	0	0	0.022525	1	10871	10871		117.81	30.115	1	1963400			4586	3210	2502	2519	4684	4684					0.021950227884985907
ATLSICSPK	9	Unmodified	_ATLSICSPK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;TRIM25|p.G621D|1|0.15|ENSG00000121060|chr17:56891731-56891731|C/T|missense_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2492980957031	2	460.249503	918.484453	-0.89006	-0.00040965	0.52593	0.00024206	-0.36413	-0.00016759	460.2497005347056	30.109	0.70803	30.109	29.831	30.539	0					65	25	3	0	0	0	0.023928	2	9907	9770;9907		115.49	27.74	1	684720			4587	3210	2502	2519	4685;4686	4686					0.021950227884985907
ATLSICSPK	9	Unmodified	_ATLSICSPK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;TRIM25|p.G621D|1|0.15|ENSG00000121060|chr17:56891731-56891731|C/T|missense_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2492370605469	2	460.249503	918.484453	0.72248	0.00033252	-0.91221	-0.00041985	-0.18974	-8.7327E-05	460.24904777206586	30.363	0.96629	30.363	29.9	30.866	0					62	21	4	0	0	0	0.063171	1	11247	11247		90.601	24.172	1	3948500			4588	3210	2502	2519	4687	4687					0.021950227884985907
ATLSICSPK	9	Unmodified	_ATLSICSPK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;TRIM25|p.G621D|1|0.15|ENSG00000121060|chr17:56891731-56891731|C/T|missense_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2491760253906	2	460.249503	918.484453	-0.057452	-2.6442E-05	-0.89512	-0.00041198	-0.95258	-0.00043842	460.2492555799981	30.14	0.75197	30.14	29.803	30.555	0					37	19	3	0	0	0	0.056004	1	10163	10163		93.143	34.361	1	474220			4589	3210	2502	2519	4688	4688					0.021950227884985907
ATLSICSPK	9	Unmodified	_ATLSICSPK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;TRIM25|p.G621D|1|0.15|ENSG00000121060|chr17:56891731-56891731|C/T|missense_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2492980957031	2	460.249503	918.484453	-2.5592	-0.0011779	2.2329	0.0010277	-0.32625	-0.00015016	460.25046849845035	30.158	0.72484	30.158	29.858	30.583	0					49	18	4	0	0	0	0.048471	2	10298	10136;10298		95.815	8.0609	1	726640			4590	3210	2502	2519	4689;4690	4690					0.021950227884985907
ATLSICSPK	9	Carbamidomethyl (C)	_ATLSIC(Carbamidomethyl (C))SPK_	ATLSIC(1)SPK		ATLSIC(110)SPK		0	1	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;TRIM25|p.G621D|1|0.15|ENSG00000121060|chr17:56891731-56891731|C/T|missense_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7604064941406	2	488.760235	975.505917	-1.1004	-0.00053783	1.2079	0.00059036	0.10748	5.2534E-05	488.7608459203211	28.165	0.37545	28.165	27.919	28.294	0					22	13	2	0	0	0	0.028876	1	9016	9016		110.12	19.75	1	145400			4591	3210	2502	2520	4691	4691	125				0.01718407817213574
ATLSLDSLFQ	10	Unmodified	_ATLSLDSLFQ_					0	0	0			REV__PCOLCE2|p.I390Tfs*8|1|0.26|ENSG00000163710|chr3:142818414-142818414|A/-|frameshift_variant	REV__PCOLCE2|p.I390Tfs*8|1|0.26|ENSG00000163710|chr3:142818414-142818414|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.5293273925781	3	365.529123	1093.56554	0.27664	0.00010112	0.41783	0.00015273	0.69447	0.00025385	365.529335355163	26.092	0.16762	26.092	25.983	26.151	0					5	3	2	0	0	0	0.7005	1	9287	9287		27.047	0	1	101870	+		4592	15911	2503	2521	4692	4692					0.022500020322468117
ATLSLTAWG	9	Unmodified	_ATLSLTAWG_					0	0	0			REV__ENST00000257215.9_1_11:61512188-61512554:+|nuORF	REV__ENST00000257215.9_1_11:61512188-61512554:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2496643066406	2	460.247818	918.481082	2.5365	0.0011674	0.82325	0.0003789	3.3597	0.0015463	460.24812900421693	30.317	1.0514	30.317	29.813	30.865	0					54	21	3	0	0	0	0.062676	1	11125	11125		90.777	11.064	1	4686200	+		4593	17986	2504	2522	4693	4693					0.01858096006139931
ATLSRTVAVA	10	Unmodified	_ATLSRTVAVA_					0	0	0			REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.1974792480469	3	330.197708	987.571294	0.37194	0.00012281	-0.82808	-0.00027343	-0.45614	-0.00015062	330.197380612306	21.812	0.10796	21.812	21.744	21.852	0					5	3	2	0	0	0	0.50881	1	6073	6073		44.377	11.565	1	54769	+		4594	18884	2505	2523	4694	4694					0.07701145334567627
ATLSRTVAVA	10	Unmodified	_ATLSRTVAVA_					0	0	0			REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1976623535156	3	330.197708	987.571294	0.6402	0.00021139	-0.76119	-0.00025134	-0.12098	-3.9948E-05	330.1974198392307	22.125	0.27553	22.125	22.031	22.307	0					12	6	3	0	0	0	0.44292	1	7148	7148		51.528	5.5555	1	2536800	+		4595	18884	2505	2523	4695	4695					0.07701145334567627
ATLTGGPAR	9	Unmodified	_ATLTGGPAR_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	nc|ENSG00000167548|O14686-3|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2378845214844	2	422.237784	842.461016	-1.2042	-0.00050847	0.54388	0.00022965	-0.66034	-0.00027882	422.2381585854907	19.448	0.14634	19.448	19.382	19.528	0					7	4	2	0	0	0	0.46194	1	5296	5296		36.447	2.2742	1	61093			4596	1282;6000	2506	2524	4696	4696					0.03348345066183356
ATLTGGPAR	9	Unmodified	_ATLTGGPAR_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	nc|ENSG00000167548|O14686-3|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.23724365234375	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.521	1	19.521	19.021	20.021	0								0	0	0	0.18645	1	5317	5317		52.937	10.541	1				4597	1282;6000	2506	2524	4697	4697					0.03348345066183356
ATLTGGPAR	9	Unmodified	_ATLTGGPAR_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	nc|ENSG00000167548|O14686-3|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.238037109375	2	422.237784	842.461016	-2.576	-0.0010877	2.3859	0.0010074	-0.1901	-8.0267E-05	422.23882784824815	19.498	0.098568	19.498	19.437	19.535	0					4	2	2	0	0	0	0.55379	1	5312	5312		26.693	2.1737	1	35240			4598	1282;6000	2506	2524	4698	4698					0.03348345066183356
ATLTGGPAR	9	Unmodified	_ATLTGGPAR_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	nc|ENSG00000167548|O14686-3|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.23748779296875	2	422.237784	842.461016	-0.33834	-0.00014286	0.059941	2.5309E-05	-0.2784	-0.00011755	422.2377045364706	19.643	0.5186	19.643	19.442	19.961	0					16	10	3	0	0	0	0.1424	1	6124	6124		69.628	10.846	1	300060			4599	1282;6000	2506	2524	4699	4699					0.03348345066183356
ATLTGGPAR	9	Unmodified	_ATLTGGPAR_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	nc|ENSG00000167548|O14686-3|KMT2D;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.23773193359375	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.711	1	19.711	19.211	20.211	0								0	0	0	0.14881	1	6143	6143		60.118	5.3419	1				4600	1282;6000	2506	2524	4700	4700					0.03348345066183356
ATLTNILEH	9	Unmodified	_ATLTNILEH_					0	0	0		nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;NLRC5|p.H1717Ifs*29|2|0.41|ENSG00000140853|chr16:57079112-57079112|C/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant;NLRC5|p.E662D|1|0.4|ENSG00000140853|chr16:57026929-57026929|G/T|missense_variant	nc|ENSG00000140853|Q86WI3-2|NLRC5	nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.2765197753906	2	506.277106	1010.53966	-0.079962	-4.0483E-05	-0.1561	-7.9029E-05	-0.23606	-0.00011951	506.27694583705255	39.371	0.20897	39.371	39.247	39.456	0					24	12	3	0	0	0	0.18416	1	12778	12778		63.534	5.3039	1	146460			4601	4410	2507	2525	4701	4701					0.03481152580627622
ATLTNILEH	9	Unmodified	_ATLTNILEH_					0	0	0		nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;NLRC5|p.H1717Ifs*29|2|0.41|ENSG00000140853|chr16:57079112-57079112|C/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant;NLRC5|p.E662D|1|0.4|ENSG00000140853|chr16:57026929-57026929|G/T|missense_variant	nc|ENSG00000140853|Q86WI3-2|NLRC5	nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.27691650390625	2	506.277106	1010.53966	-0.040899	-2.0706E-05	-0.20729	-0.00010494	-0.24819	-0.00012565	506.2770341768189	39.698	0.42756	39.698	39.453	39.88	0					36	17	4	0	0	0	0.023928	1	15101	15101		115.49	30.579	1	787220			4602	4410	2507	2525	4702	4702					0.03481152580627622
ATLTSIGK	8	Unmodified	_ATLTSIGK_					0	0	0			REV__nc|ENSG00000118246|Q9NYY8-2|FASTKD2	REV__nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.7370300292969	2	395.737086	789.459619	-1.2758	-0.00050489	1.2644	0.00050038	-0.011401	-4.5117E-06	395.7375117915324	22.973	0.10108	22.973	22.938	23.039	0					5	3	2	0	0	0	0.64144	1	6843	6843		42.396	10.441	1	67199	+		4603	14215	2508	2526	4703	4703					0.056467109774303026
ATLTTTSATSK	11	Unmodified	_ATLTTTSATSK_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207;ENST00000584696.1_1_17:30693734-30695045:+|nuORF	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2905883789062	2	541.290411	1080.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.105	1	19.105	18.605	19.605	0								0	0	0	0.12082	1	4879	4879		72.096	15.375	1				4604	1032	2509	2527	4704	4704					0.02920796681291904
ATLTTTSATSK	11	Unmodified	_ATLTTTSATSK_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207;ENST00000584696.1_1_17:30693734-30695045:+|nuORF	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2906494140625	2	541.290411	1080.56627	0.28911	0.0001565	0.27803	0.0001505	0.56715	0.00030699	541.2905993952052	19.439	0.14172	19.439	19.339	19.481	0					8	3	3	0	0	0	6.9163E-05	1	5872	5872		150.81	88.703	1	876990			4605	1032	2509	2527	4705	4705					0.02920796681291904
ATLTTTSATSK	11	Unmodified	_ATLTTTSATSK_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207;ENST00000584696.1_1_17:30693734-30695045:+|nuORF	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2909545898438	2	541.290411	1080.56627	0.08955	4.8472E-05	0.58018	0.00031405	0.66973	0.00036252	541.2908615790036	19.122	0.10493	19.122	19.057	19.162	0					5	3	2	0	0	0	0.056425	1	5130	5130		102.06	59.587	1	182710			4606	1032	2509	2527	4706	4706					0.02920796681291904
ATLTTTSATSK	11	Unmodified	_ATLTTTSATSK_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207;ENST00000584696.1_1_17:30693734-30695045:+|nuORF	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2908325195312	2	541.290411	1080.56627	-1.4834	-0.00080296	1.7044	0.00092259	0.22101	0.00011963	541.2911670750306	19.189	0.14146	19.189	19.093	19.234	0					7	3	3	0	0	0	0.21827	1	5168	5168		72.096	35.778	1	136020			4607	1032	2509	2527	4707	4707					0.02920796681291904
ATLTTTSATSK	11	Unmodified	_ATLTTTSATSK_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207;ENST00000584696.1_1_17:30693734-30695045:+|nuORF	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2904052734375	2	541.290411	1080.56627	3.5248	0.0019079	-3.5323	-0.001912	-0.0074537	-4.0346E-06	541.2882745911487	19.318	0.26383	19.318	19.212	19.476	0					9	5	3	0	0	0	0.040365	1	5960	5960		109.83	47.722	1	1356300			4608	1032	2509	2527	4708	4708					0.02920796681291904
ATLTVMVI	8	Oxidation (M)	_ATLTVM(Oxidation (M))VI_		ATLTVM(1)VI		ATLTVM(75)VI	0	0	1		DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.24859619140625	2	432.248972	862.48339	0.74449	0.00032181	-0.71532	-0.0003092	0.029175	1.2611E-05	432.24874977728166	43.18	0.13456	43.18	43.09	43.225	0					11	7	2	0	0	0	0.36926	1	16315	16315		74.517	19.752	1	41313			4609	749	2510	2528	4709	4709		35			0.046648084196021955
ATLTVMVI	8	Oxidation (M)	_ATLTVM(Oxidation (M))VI_		ATLTVM(1)VI		ATLTVM(45)VI	0	0	1		DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.24835205078125	2	432.248972	862.48339	0.98088	0.00042398	-1.2265	-0.00053017	-0.24565	-0.00010618	432.24836307488584	43.156	0.17415	43.156	43.061	43.235	0					13	8	2	0	0	0	0.6282	1	16896	16896		44.531	16.277	1	70008			4610	749	2510	2528	4710	4710		35			0.046648084196021955
ATLTVMVI	8	Oxidation (M)	_ATLTVM(Oxidation (M))VI_		ATLTVM(1)VI		ATLTVM(120)VI	0	0	1		DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.2489318847656	2	432.248972	862.48339	0.91237	0.00039437	-1.6159	-0.00069849	-0.70356	-0.00030411	432.2483070368157	43.111	0.22407	43.111	43.023	43.247	0					8	6	2	0	0	0	0.23567	1	17237	17237		119.22	28.282	1	109340			4611	749	2510	2528	4711	4711		35			0.046648084196021955
ATLTVMVI	8	Unmodified	_ATLTVMVI_					0	0	0		DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.25103759765625	2	424.251514	846.488476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.366	1	49.366	48.866	49.866	0								0	0	0	1.7419	1	19526	19526		83.287	17.39	1				4612	749	2510	2529	4712	4712					0.05909112282222395
ATLVLGWVHG	10	Unmodified	_ATLVLGWVHG_					0	0	0			REV__ENST00000368761.9_1_6:111880407-111880587:-|nuORF	REV__ENST00000368761.9_1_6:111880407-111880587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7973022460938	2	526.798009	1051.58147	0.95454	0.00050285	-4.019	-0.0021172	-3.0645	-0.0016143	526.7957693062565	27.178	0.26474	27.178	27.023	27.287	0					6	5	2	0	0	0	0.54387	1	9829	9829		40.573	1.3198	1	57174	+		4613	18613	2511	2530	4713	4713					0.05773753059793307
ATLVSLRGNY	10	Unmodified	_ATLVSLRGNY_					0	0	0			REV__ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	REV__ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.2049560546875	3	365.204862	1092.59276	0.74756	0.00027301	-0.90925	-0.00033206	-0.16168	-5.9047E-05	365.20454914402427	26.415	0.31129	26.415	26.287	26.598	0					14	7	3	0	0	0	0.58896	1	9100	9100		47.96	17.391	1	659170	+		4614	12160	2512	2531	4714	4714					0.050165303632638825
ATLYPWYP	8	Unmodified	_ATLYPWYP_					0	0	0			REV__ENSG00000254206|ENST00000698511|NPIPB11	REV__ENSG00000254206|ENST00000698511|NPIPB11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.7528381347656	2	505.752736	1009.49092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.799	1	30.799	30.299	31.299	0								0	0	0	1.7419	1	9848	9848		29.842	0.67148	1		+		4615	17742	2514	2532	4715	4715					-0.013447159884890425
ATMATSGSAR	10	Unmodified	_ATMATSGSAR_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7293701171875	2	476.729466	951.444379	0.37262	0.00017764	-0.94621	-0.00045109	-0.57359	-0.00027345	476.72915923109997	15.778	0.25177	15.778	15.697	15.949	0					10	6	3	0	0	0	0.11048	1	4158	4158		93.598	31.49	1	389210			4616	4457	2515	2533	4716	4716					-0.03328523882066747
ATMATSGSAR	10	Unmodified	_ATMATSGSAR_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.72900390625	2	476.729466	951.444379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.765	1	15.765	15.265	16.265	0								0	0	0	0.11831	1	4376	4376		76.17	23.233	1				4617	4457	2515	2533	4717	4717					-0.03328523882066747
ATMATSGSAR	10	Unmodified	_ATMATSGSAR_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7291259765625	2	476.729466	951.444379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.777	1	15.777	15.277	16.277	0								0	0	0	0.017278	1	4234	4234		114.89	27.14	1				4618	4457	2515	2533	4718	4718					-0.03328523882066747
ATMATSGSAR	10	Unmodified	_ATMATSGSAR_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7293701171875	2	476.729466	951.444379	0.8	0.00038138	-1.9589	-0.00093385	-1.1589	-0.00055247	476.72898350469615	15.74	0.116	15.74	15.681	15.797	0					6	2	3	0	0	0	0.3337	1	4230	4230		63.534	19.417	1	348810			4619	4457	2515	2533	4719	4719					-0.03328523882066747
ATMATSGSARK	11	Unmodified	_ATMATSGSARK_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2789916992188	2	540.776948	1079.53934	1.0067	0.00054441	0.069503	3.7586E-05	1.0762	0.000582	540.7771444474355	13.521	0.061297	13.521	13.49	13.552	0					5	3	2	0	0	0	0.093595	1	2662	2662		91.265	27.959	1	60708			4620	4457	2516	2534	4720	4720					0.002754095891077668
ATMEHHANR	9	Unmodified	_ATMEHHANR_					0	0	0		nc|ENSG00000152256|Q15118-2|PDK1;ENSG00000152256|ENST00000282077|PDK1	nc|ENSG00000152256|Q15118-2|PDK1	nc|ENSG00000152256|Q15118-2|PDK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.746826171875	2	533.745982	1065.47741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.145	1	12.145	11.645	12.645	0								0	0	0	0.24544	1	2495	2495		44.377	21.798	1				4621	5006	2517	2535	4721	4721					-0.052708970393723575
ATMEVKVGR	9	Unmodified	_ATMEVKVGR_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.774169921875	2	495.773677	989.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.936	1	21.936	21.436	22.436	0								0	0	0	0.10319	1	6123	6123		70.816	26.439	1				4622	8044	2518	2536	4722	4722					0.037615164284147795
ATMEVKVGR	9	Unmodified	_ATMEVKVGR_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7733459472656	2	495.773677	989.5328	0.73375	0.00036377	-0.93901	-0.00046554	-0.20527	-0.00010177	495.77334008886186	22.266	0.45541	22.266	22.119	22.575	0					19	10	3	0	0	0	0.02953	1	7190	7190		109.48	60.037	1	1147600			4623	8044	2518	2536	4723	4723					0.037615164284147795
ATMEVKVGR	9	Unmodified	_ATMEVKVGR_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7734375	2	495.773677	989.5328	0.72384	0.00035886	-1.3124	-0.00065065	-0.58854	-0.00029178	495.77305868574535	22.175	0.41194	22.175	22.005	22.417	0					16	8	3	0	0	0	0.04067	1	7446	7446		98.582	39.8	1	1133600			4624	8044	2518	2536	4724	4724					0.037615164284147795
ATMEVKVGR	9	Unmodified	_ATMEVKVGR_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.8515930175781	3	330.851543	989.5328	1.5029	0.00049725	-1.9167	-0.00063414	-0.41375	-0.00013689	330.85108720138714	22.111	0.1652	22.111	22.005	22.17	0					9	3	4	0	0	0	0.37197	1	7449	7449		60.118	32.236	1	922740			4625	8044	2518	2536	4725	4725					0.037615164284147795
ATMEVKVGR	9	Unmodified	_ATMEVKVGR_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.77349853515625	2	495.773677	989.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.014	1	22.014	21.514	22.514	0								0	0	0	0.088368	1	6485	6485		75.043	0.78827	1				4626	8044	2518	2536	4726	4726					0.037615164284147795
ATMGETVMSVK	11	Unmodified	_ATMGETVMSVK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000491577.5_1_1:28879622-28887259:+|nuORF;ENST00000480930.5_1_1:28879622-28887666:+|nuORF;ENST00000464880.5_1_1:28879622-28887433:+|nuORF;ENST00000495995.5_1_1:28880088-28887666:+|nuORF;ENST00000411406.3_1_1:28879622-28880250:+|nuORF;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;TRNAU1AP-PTPRU|3|fusion	TRNAU1AP-PTPRU|3|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.2835693359375	2	577.283217	1152.55188	-0.38021	-0.00021949	1.1031	0.00063679	0.72288	0.00041731	577.2836913341675	32.267	0.2018	32.267	32.157	32.359	0					7	4	2	0	0	0	0.079044	1	12256	12256		86.882	42.504	1	170350			4627	23068;6792	2519	2537	4727	4727					-0.018293150628778676
ATMISTKK	8	Unmodified	_ATMISTKK_					0	0	0			REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2503967285156	2	440.252046	878.489538	-3.0309	-0.0013344	-0.90251	-0.00039733	-3.9334	-0.0017317	440.25167141724467	25.335	0.18953	25.335	25.239	25.428	0					7	4	2	0	0	0	0.5676	1	8050	8050		53.351	0	1	194680	+		4628	20231	2520	2538	4728	4728					0.04543326651116786
ATMKTELQK	9	Unmodified	_ATMKTELQK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.287109375	2	525.286617	1048.55868	1.3856	0.00072784	-1.0091	-0.00053009	0.37646	0.00019775	525.2863771113169	18.625	0.12751	18.625	18.568	18.695	0					12	4	4	0	0	0	0.037924	1	4656	4656		101.25	21.54	1	592610			4629	1919	2521	2539	4729	4729					0.03634365880020596
ATMKTELQK	9	Unmodified	_ATMKTELQK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2872314453125	2	525.286617	1048.55868	1.9086	0.0010025	-0.99423	-0.00052226	0.91433	0.00048029	525.286312434123	18.967	0.27288	18.967	18.865	19.138	0					18	7	4	0	0	0	0.00324	1	5631	5631		167.23	55.58	1	2996800			4630	1919	2521	2539	4730	4730					0.03634365880020596
ATMKTELQK	9	Unmodified	_ATMKTELQK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2869262695312	2	525.286617	1048.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.86	1	18.86	18.36	19.36	0								0	0	0	0.00030372	1	5864	5864		136.27	42.262	1				4631	1919	2521	2539	4731	4731					0.03634365880020596
ATMKTELQK	9	Unmodified	_ATMKTELQK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2869262695312	2	525.286617	1048.55868	1.6388	0.00086085	-1.8049	-0.00094811	-0.16613	-8.7265E-05	525.2861269757453	18.696	0.11417	18.696	18.633	18.747	0					8	3	3	0	0	0	0.0059092	1	4939	4939		154.12	66.364	1	274840			4632	1919	2521	2539	4732	4732					0.03634365880020596
ATMKTELQK	9	Unmodified	_ATMKTELQK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2868041992188	2	525.286617	1048.55868	1.1686	0.00061384	-0.67201	-0.000353	0.49657	0.00026084	525.2863999163685	18.722	0.13174	18.722	18.643	18.775	0					5	3	2	0	0	0	0.085655	1	4933	4933		82.75	11.455	1	180250			4633	1919	2521	2539	4733	4733					0.03634365880020596
ATMLATGGNR	10	Unmodified	_ATMLATGGNR_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2530517578125	2	496.253108	990.491664	2.8689	0.0014237	2.8503	0.0014145	5.7193	0.0028382	496.2544353352482	22.215	0.56927	22.215	21.903	22.472	0					23	11	4	0	0	0	0.003796	1	7247	7247		169.65	71.023	1	7346800			4634	5819	2522	2540	4734	4734					-0.003962446110563178
ATMLLLSLTL	10	Unmodified	_ATMLLLSLTL_					0	0	0		ENST00000572144.5_1_16:67965629-67965878:-|nuORF;ENST00000576408.1_1_16:67964677-67965878:-|nuORF	ENST00000572144.5_1_16:67965629-67965878:-|nuORF	ENST00000572144.5_1_16:67965629-67965878:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.22052001953125	3	359.219233	1074.63587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.152	1	11.152	10.652	11.652	0								0	0	0	0.4201	1	2221	2221		11.636	3.8314	1				4635	10809	2523	2541	4735	4735					0.10153584096360646
ATMPDNTAAQK	11	Unmodified	_ATMPDNTAAQK_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.274658203125	2	574.274238	1146.53392	1.0502	0.0006031	-0.99612	-0.00057205	0.054083	3.1059E-05	574.2738654434809	18.864	0.22955	18.864	18.678	18.907	0					9	6	2	0	0	0	0.4145	1	4761	4761		48.602	2.6293	1	146010			4636	2348	2524	2542	4736	4736					-0.03348313993365082
ATMPDNTAAQK	11	Unmodified	_ATMPDNTAAQK_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.274169921875	2	574.274238	1146.53392	-0.11286	-6.4814E-05	0.1873	0.00010756	0.074442	4.275E-05	574.2744073873117	19.16	0.2688	19.16	18.993	19.262	0					15	6	3	0	0	0	0.24228	1	5722	5722		68.626	19.184	1	667760			4637	2348	2524	2542	4737	4737					-0.03348313993365082
ATMPDNTAAQK	11	Unmodified	_ATMPDNTAAQK_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.2745361328125	2	574.274238	1146.53392	-1.5023	-0.00086276	1.7249	0.00099056	0.22255	0.0001278	574.2752543858325	18.919	0.22817	18.919	18.747	18.975	0					12	5	3	0	0	0	0.61747	1	5028	5028		32.751	9.2278	1	157110			4638	2348	2524	2542	4738	4738					-0.03348313993365082
ATMPKKGILKK	11	Unmodified	_ATMPKKGILKK_					0	0	0		NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant;ENSG00000074590|ENST00000261402|NUAK1	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.5934143066406	3	405.593293	1213.75805	0.61825	0.00025076	-0.51271	-0.00020795	0.10555	4.2809E-05	405.5930912269871	17.344	0.12843	17.344	17.268	17.397	0					7	4	2	0	0	0	0.54316	1	4123	4123		41.08	11.91	1	80691			4639	1526	2525	2543	4739	4739					0.15972045898570286
ATMPKKGILKK	11	Unmodified	_ATMPKKGILKK_					0	0	0		NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant;ENSG00000074590|ENST00000261402|NUAK1	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.8860473632812	2	607.886301	1213.75805	-0.60381	-0.00036705	0.31973	0.00019436	-0.28407	-0.00017268	607.8864218481436	17.655	0.16652	17.655	17.568	17.735	0					11	4	3	0	0	0	0.24586	1	5027	5027		68.846	68.846	1	559250			4640	1526	2525	2543	4740	4740					0.15972045898570286
ATMPKKGILKK	11	Unmodified	_ATMPKKGILKK_					0	0	0		NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant;ENSG00000074590|ENST00000261402|NUAK1	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.5931091308594	3	405.593293	1213.75805	0.045567	1.8482E-05	-0.69746	-0.00028289	-0.6519	-0.0002644	405.5930623624212	17.642	0.21799	17.642	17.55	17.768	0					10	4	4	0	0	0	0.27635	1	5269	5269		65.278	17.318	1	356200			4641	1526	2525	2543	4741	4741					0.15972045898570286
ATMPKKGILKK	11	Unmodified	_ATMPKKGILKK_					0	0	0		NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant;ENSG00000074590|ENST00000261402|NUAK1	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.88671875	2	607.886301	1213.75805	0.51571	0.00031349	0.10147	6.1684E-05	0.61718	0.00037518	607.8863719257487	17.626	0.11738	17.626	17.567	17.684	0					4	2	2	0	0	0	0.39748	1	5278	5278		50.034	15.861	1	385150			4642	1526	2525	2543	4742	4742					0.15972045898570286
ATMPKKGILKK	11	Unmodified	_ATMPKKGILKK_					0	0	0		NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant;ENSG00000074590|ENST00000261402|NUAK1	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.92681884765625	3	405.593293	1213.75805	0.14367	5.8271E-05	-0.83693	-0.00033945	-0.69326	-0.00028118	405.59359420167357	17.407	0.17733	17.407	17.348	17.526	0					10	5	3	0	0	0	0.44025	1	4335	4335		48.602	26.022	1	68785			4643	1526	2525	2543	4743	4743					0.15972045898570286
ATMPKKGILKK	11	Unmodified	_ATMPKKGILKK_					0	0	0		NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant;ENSG00000074590|ENST00000261402|NUAK1	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.5931701660156	3	405.593293	1213.75805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.566	1	17.566	17.066	18.066	0								0	0	0	0.06838	1	5092	5092		82.831	31.638	1				4644	1526	2525	2543	4744	4744					0.15972045898570286
ATMPRPTQ	8	Unmodified	_ATMPRPTQ_					0	0	0			REV__CNTNAP1|p.R1226Q|1|0.22|ENSG00000108797|chr17:42697662-42697662|G/A|missense_variant	REV__CNTNAP1|p.R1226Q|1|0.22|ENSG00000108797|chr17:42697662-42697662|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.231689453125	2	451.231645	900.448736	0.21151	9.5438E-05	-1.944	-0.0008772	-1.7325	-0.00078176	451.23061494854466	19.592	0.68109	19.592	19.414	20.095	0					21	15	2	0	0	0	0.66095	1	5994	5994		39.253	4.0521	1	178360	+		4645	12538	2526	2544	4745	4745					-0.0054701466849564895
ATMPRPTQ	8	Oxidation (M)	_ATM(Oxidation (M))PRPTQ_		ATM(1)PRPTQ		ATM(110)PRPTQ	0	0	1			REV__CNTNAP1|p.R1226Q|1|0.22|ENSG00000108797|chr17:42697662-42697662|G/A|missense_variant	REV__CNTNAP1|p.R1226Q|1|0.22|ENSG00000108797|chr17:42697662-42697662|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2290344238281	2	459.229102	916.443651	-0.66454	-0.00030518	-0.068142	-3.1293E-05	-0.73269	-0.00033647	459.2291433297519	13.337	0.20203	13.337	13.254	13.456	0					11	5	3	0	0	0	0.24425	1	3005	3005		111.65	10.048	1	1957400	+		4646	12538	2526	2545	4746	4746		483			-0.0179131853110448
ATMPSPSRMEQ	11	Unmodified	_ATMPSPSRMEQ_					0	0	0			REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant	REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.1900329589844	3	412.190007	1233.54819	1.018	0.0004196	-1.7174	-0.00070788	-0.69938	-0.00028828	412.189553049679	24.942	0.33858	24.942	24.825	25.164	0					25	8	5	0	0	0	0.33926	1	8453	8453		58.63	5.5406	1	2290000	+		4647	17125	2527	2546	4747	4747					-0.05923984836726959
ATMQGDREQLK	11	Unmodified	_ATMQGDREQLK_					0	0	0		ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	638.8191528320312	2	638.819344	1275.62413	0.20956	0.00013387	-0.0012754	-8.1473E-07	0.20829	0.00013306	638.8198699801791	18.787	0.11459	18.787	18.711	18.826	0					7	3	3	0	0	0	0.2545	1	4738	4738		84.817	28.384	1	122190			4648	82	2528	2547	4748	4748					-0.0026526466494942724
ATMQGDREQLK	11	Unmodified	_ATMQGDREQLK_					0	0	0		ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	638.8192749023438	2	638.819344	1275.62413	0.7859	0.00050205	-0.8599	-0.00054932	-0.073996	-4.727E-05	638.8189702215209	19.118	0.17566	19.118	18.993	19.169	0					10	4	3	0	0	0	0.0011415	1	5719	5719		125.68	42.932	1	796300			4649	82	2528	2547	4749	4749					-0.0026526466494942724
ATMQGDREQLK	11	Unmodified	_ATMQGDREQLK_					0	0	0		ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	638.8195190429688	2	638.819344	1275.62413	-0.76738	-0.00049022	0.72264	0.00046164	-0.04474	-2.8581E-05	638.8201146249957	18.799	0.16395	18.799	18.707	18.871	0					11	5	3	0	0	0	0.053596	1	4971	4971		86.189	27.943	1	285000			4650	82	2528	2547	4750	4750					-0.0026526466494942724
ATMQGDREQLK	11	Unmodified	_ATMQGDREQLK_					0	0	0		ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	638.8192138671875	2	638.819344	1275.62413	1.7322	0.0011066	-1.9087	-0.0012193	-0.17655	-0.00011279	638.8181814335048	19.025	0.21489	19.025	18.917	19.132	0					10	4	3	0	0	0	0.00028927	1	5953	5953		126.03	19.018	1	2833900			4651	82	2528	2547	4751	4751					-0.0026526466494942724
ATMQGDREQLK	11	Unmodified	_ATMQGDREQLK_					0	0	0		ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	638.8195190429688	2	638.819344	1275.62413	-2.2603	-0.0014439	2.0003	0.0012778	-0.26002	-0.0001661	638.8210320717577	18.878	0.096239	18.878	18.832	18.928	0					4	2	2	0	0	0	6.6063E-05	1	5024	5024		115.23	42.353	1	217420			4652	82	2528	2547	4752	4752					-0.0026526466494942724
ATMQGDREQLK	11	Unmodified	_ATMQGDREQLK_					0	0	0		ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	638.8197021484375	2	638.819344	1275.62413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.046	1	19.046	18.546	19.546	0								0	0	0	7.165E-23	1	5815	5815		185.33	86.745	1				4653	82	2528	2547	4753	4753					-0.0026526466494942724
ATMQSKLIQK	10	Unmodified	_ATMQSKLIQK_					0	0	0		ENST00000341617.7_1_7:126079175-126341814:-|nuORF;nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8	ENST00000341617.7_1_7:126079175-126341814:-|nuORF	ENST00000341617.7_1_7:126079175-126341814:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.2215576171875	3	383.221636	1146.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.164	1	22.164	21.664	22.664	0								0	0	0	0.19216	1	7157	7157		65.157	11.56	1				4654	6775	2529	2548	4754	4754					0.07562316696771632
ATMQSKLIQK	10	Unmodified	_ATMQSKLIQK_					0	0	0		ENST00000341617.7_1_7:126079175-126341814:-|nuORF;nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8	ENST00000341617.7_1_7:126079175-126341814:-|nuORF	ENST00000341617.7_1_7:126079175-126341814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.3292236328125	2	574.328816	1146.64308	-0.17641	-0.00010132	0.5839	0.00033535	0.40749	0.00023403	574.3293159161456	21.997	0.1147	21.997	21.939	22.054	0					6	2	3	0	0	0	0.0084686	1	7394	7394		152.06	53.479	1	383810			4655	6775	2529	2548	4755	4755					0.07562316696771632
ATNAAAQNAIK	11	Unmodified	_ATNAAAQNAIK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7923583984375	2	536.790912	1071.56727	-0.43782	-0.00023502	1.7234	0.00092512	1.2856	0.0006901	536.7919557772334	18.59	0.099377	18.59	18.559	18.658	0					6	3	2	0	0	0	0.39337	1	4897	4897		52.167	21.849	1	175210			4656	4144;6333	2530	2549	4756	4756					0.03435055840827772
ATNAAAQNAIK	11	Unmodified	_ATNAAAQNAIK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.792236328125	2	536.790912	1071.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.855	1	18.855	18.355	19.355	0								0	0	0	0.00031538	1	5861	5861		128.35	62.883	1				4657	4144;6333	2530	2549	4757	4757					0.03435055840827772
ATNAACASLLK	11	Carbamidomethyl (C)	_ATNAAC(Carbamidomethyl (C))ASLLK_	ATNAAC(1)ASLLK		ATNAAC(86)ASLLK		0	1	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.2949829101562	2	560.294973	1118.57539	1.4327	0.00080275	-0.18182	-0.00010188	1.2509	0.00070088	560.2945471102274	27.741	0.10992	27.741	27.683	27.792	0					5	3	2	0	0	0	0.11438	1	8589	8589		86.189	33.1	1	59037			4658	3955	2531	2550	4758	4758	168				0.020848667659493003
ATNAACASLLK	11	Carbamidomethyl (C)	_ATNAAC(Carbamidomethyl (C))ASLLK_	ATNAAC(1)ASLLK		ATNAAC(110)ASLLK		0	1	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.2953491210938	2	560.294973	1118.57539	1.7944	0.0010054	-1.258	-0.00070484	0.53646	0.00030058	560.2943079201381	28.007	0.21025	28.007	27.924	28.135	0					12	5	3	0	0	0	0.032425	1	9861	9861		113.67	40.791	1	498940			4659	3955	2531	2550	4759	4759	168				0.020848667659493003
ATNAACASLLK	11	Carbamidomethyl (C)	_ATNAAC(Carbamidomethyl (C))ASLLK_	ATNAAC(1)ASLLK		ATNAAC(76)ASLLK		0	1	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.2957763671875	2	560.294973	1118.57539	0.12529	7.0198E-05	0.94592	0.00053	1.0712	0.00060019	560.2952897009266	27.765	0.15145	27.765	27.676	27.827	0					10	5	3	0	0	0	0.18934	1	8879	8879		75.566	17.336	1	177870			4660	3955	2531	2550	4760	4760	168				0.020848667659493003
ATNAACASLLK	11	Carbamidomethyl (C)	_ATNAAC(Carbamidomethyl (C))ASLLK_	ATNAAC(1)ASLLK		ATNAAC(160)ASLLK		0	1	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.2952270507812	2	560.294973	1118.57539	1.7993	0.0010082	-1.618	-0.00090656	0.18132	0.00010159	560.294349098887	28.004	0.19928	28.004	27.897	28.096	0					10	4	3	0	0	0	5.234E-05	1	10221	10221		160.91	59.66	1	789080			4661	3955	2531	2550	4761	4761	168				0.020848667659493003
ATNAACASLLK	11	Carbamidomethyl (C)	_ATNAAC(Carbamidomethyl (C))ASLLK_	ATNAAC(1)ASLLK		ATNAAC(81)ASLLK		0	1	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.2951049804688	2	560.294973	1118.57539	1.0498	0.0005882	-0.76923	-0.000431	0.28057	0.0001572	560.2946072659646	27.791	0.13188	27.791	27.743	27.875	0					5	3	2	0	0	0	0.14473	1	9152	9152		80.916	22.686	1	97841			4662	3955	2531	2550	4762	4762	168				0.020848667659493003
ATNAACASLLK	11	Carbamidomethyl (C)	_ATNAAC(Carbamidomethyl (C))ASLLK_	ATNAAC(1)ASLLK		ATNAAC(150)ASLLK		0	1	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.29541015625	2	560.294973	1118.57539	1.8212	0.0010204	-1.7874	-0.0010015	0.033741	1.8905E-05	560.2943482208153	27.951	0.26314	27.951	27.846	28.109	0					12	5	3	0	0	0	7.0606E-05	1	10083	10083		149.94	74.9	1	1024400			4663	3955	2531	2550	4763	4763	168				0.020848667659493003
ATNARRQL	8	Unmodified	_ATNARRQL_					0	0	0			REV__AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant	REV__AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.26513671875	2	465.267407	928.520262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.288	1	33.288	32.788	33.788	0								0	0	0	1.7419	1	12732	12732		34.173	0.65696	1		+		4664	12019	2532	2551	4764	4764					0.05314241080361626
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.254150390625	2	510.253828	1018.4931	1.0561	0.00053888	-0.57788	-0.00029486	0.47822	0.00024401	510.25332679841597	18.073	0.14432	18.073	17.999	18.143	0					10	4	3	0	0	0	0.061783	1	4437	4437		112.85	49.312	1	231880			4665	7739	2533	2552	4765	4765					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.253662109375	2	510.253828	1018.4931	0.96553	0.00049267	-0.35405	-0.00018065	0.61149	0.00031201	510.2534141016553	18.375	0.31785	18.375	18.254	18.571	0					19	7	4	0	0	0	0.00070574	1	5358	5358		187.16	96.554	1	1633900			4666	7739	2533	2552	4766	4766					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.254150390625	2	510.253828	1018.4931	-0.44717	-0.00022817	0.73411	0.00037458	0.28694	0.00014641	510.25418447561026	18.069	0.14408	18.069	17.989	18.133	0					11	4	3	0	0	0	0.0095014	1	4666	4666		144.77	70.793	1	271030			4667	7739	2533	2552	4767	4767					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2538757324219	2	510.253828	1018.4931	1.1949	0.00060968	-0.97916	-0.00049962	0.21569	0.00011006	510.2532693914945	18.301	0.16932	18.301	18.241	18.411	0					7	3	3	0	0	0	0.42036	1	5633	5633		57.149	19.641	1	1545000			4668	7739	2533	2552	4768	4768					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.25335693359375	2	510.253828	1018.4931	0.73655	0.00037583	-0.80858	-0.00041258	-0.072031	-3.6754E-05	510.25291526241335	18.132	0.15771	18.132	18.067	18.225	0					7	3	3	0	0	0	0.031797	1	4678	4678		115.23	47.738	1	158020			4669	7739	2533	2552	4769	4769					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2546081542969	2	510.253828	1018.4931	0.27878	0.00014225	-0.077678	-3.9636E-05	0.2011	0.00010261	510.2536241942478	18.157	0.15893	18.157	18.05	18.209	0					8	3	3	0	0	0	0.0049231	1	4676	4676		166.86	81.504	1	261300			4670	7739	2533	2552	4770	4770					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2537841796875	2	510.253828	1018.4931	-0.011012	-5.619E-06	0.80328	0.00040987	0.79226	0.00040426	510.25404989961066	18.328	0.21501	18.328	18.223	18.438	0					14	4	4	0	0	0	0.00040786	1	5455	5455		190.57	83.566	1	1087000			4671	7739	2533	2552	4771	4771					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.25384521484375	2	510.253828	1018.4931	1.3687	0.00069837	-1.1228	-0.00057293	0.24584	0.00012544	510.25316332798496	18.313	0.21509	18.313	18.206	18.421	0					11	4	3	0	0	0	0.0057694	1	5468	5468		163.84	83.384	1	2225500			4672	7739	2533	2552	4772	4772					-0.015403320413270194
ATNGAHVNHR	10	Unmodified	_ATNGAHVNHR_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7695922851562	2	538.770845	1075.52714	0.30073	0.00016203	-0.73549	-0.00039626	-0.43475	-0.00023423	538.770196317588	11.302	0.11712	11.302	11.219	11.336	0					12	5	3	0	0	0	0.58189	1	2269	2269		36.447	11.928	1	165520			4673	151	2534	2553	4773	4773					-0.007604460390666645
ATNGAKFLK	9	Unmodified	_ATNGAKFLK_					0	0	0		ENST00000503063.5_1_17:48628810-48629053:+|nuORF;ENST00000504271.1_1_17:48628191-48629053:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	ENST00000503063.5_1_17:48628810-48629053:+|nuORF	ENST00000503063.5_1_17:48628810-48629053:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2767028808594	2	475.276909	948.539266	-0.43246	-0.00020554	-0.0064837	-3.0815E-06	-0.43894	-0.00020862	475.27687502693317	20.431	0.14983	20.431	20.373	20.522	0					7	3	3	0	0	0	0.025517	1	6345	6345		113.41	36.637	1	440900			4674	976	2535	2554	4774	4774					0.06293777651433174
ATNGAKFLK	9	Unmodified	_ATNGAKFLK_					0	0	0		ENST00000503063.5_1_17:48628810-48629053:+|nuORF;ENST00000504271.1_1_17:48628191-48629053:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	ENST00000503063.5_1_17:48628810-48629053:+|nuORF	ENST00000503063.5_1_17:48628810-48629053:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.27667236328125	2	475.276909	948.539266	0.61989	0.00029462	-0.80486	-0.00038253	-0.18497	-8.7912E-05	475.2766096027305	20.372	0.5692	20.372	20.212	20.781	0					19	11	4	0	0	0	0.0016668	1	6581	6581		176.44	60.986	1	1837400			4675	976	2535	2554	4775	4775					0.06293777651433174
ATNGAKFLK	9	Unmodified	_ATNGAKFLK_					0	0	0		ENST00000503063.5_1_17:48628810-48629053:+|nuORF;ENST00000504271.1_1_17:48628191-48629053:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	ENST00000503063.5_1_17:48628810-48629053:+|nuORF	ENST00000503063.5_1_17:48628810-48629053:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2765197753906	2	475.276909	948.539266	-2.6706	-0.0012693	1.5923	0.00075679	-1.0783	-0.00051249	475.27772901301336	20.17	0.14811	20.17	20.117	20.265	0					8	3	3	0	0	0	0.0406	1	5628	5628		98.629	7.8527	1	205460			4676	976	2535	2554	4776	4776					0.06293777651433174
ATNGKVLKK	9	Unmodified	_ATNGKVLKK_					0	0	0		ENSG00000115008|ENST00000263339|IL1A	ENSG00000115008|ENST00000263339|IL1A	ENSG00000115008|ENST00000263339|IL1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.8055419921875	2	479.805834	957.597115	0.669	0.00032099	-1.4633	-0.00070208	-0.79425	-0.00038109	479.80517274716027	12.933	0.18156	12.933	12.843	13.024	0					8	4	3	0	0	0	0.013878	1	3022	3022		132.76	22.638	1	1125000			4677	2877	2536	2555	4777	4777					0.11662039576845018
ATNGPPVLVK	10	Unmodified	_ATNGPPVLVK_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF;ENST00000439235.5_1_17:7812698-7814900:+|nuORF;ENST00000481999.1_1_17:7813558-7814900:+|nuORF	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2983703613281	2	498.297842	994.581131	-1.1053	-0.00055075	1.0289	0.00051269	-0.076384	-3.8062E-05	498.29835635250566	27.267	0.40023	27.267	26.99	27.39	0					24	14	2	0	0	0	0.59277	1	8607	8607		35.152	3.1972	1	219430			4678	6204	2537	2556	4778	4778					0.08362333339937322
ATNGPPVLVK	10	Unmodified	_ATNGPPVLVK_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF;ENST00000439235.5_1_17:7812698-7814900:+|nuORF;ENST00000481999.1_1_17:7813558-7814900:+|nuORF	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2978820800781	2	498.297842	994.581131	0.17518	8.7291E-05	0.0042136	2.0996E-06	0.17939	8.939E-05	498.2977985698486	27.303	0.41388	27.303	27.052	27.466	0					20	10	3	0	0	0	0.24256	1	8868	8868		74.255	13.283	1	286140			4679	6204	2537	2556	4779	4779					0.08362333339937322
ATNGPPVLVK	10	Unmodified	_ATNGPPVLVK_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF;ENST00000439235.5_1_17:7812698-7814900:+|nuORF;ENST00000481999.1_1_17:7813558-7814900:+|nuORF	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2980651855469	2	498.297842	994.581131	-2.2274	-0.0011099	2.1115	0.0010521	-0.11596	-5.7782E-05	498.2986364682949	27.329	0.26151	27.329	27.152	27.414	0					9	6	2	0	0	0	0.48965	1	8915	8915		46.457	14.502	1	77603			4680	6204	2537	2556	4780	4780					0.08362333339937322
ATNGPPVLVK	10	Unmodified	_ATNGPPVLVK_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF;ENST00000439235.5_1_17:7812698-7814900:+|nuORF;ENST00000481999.1_1_17:7813558-7814900:+|nuORF	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2977294921875	2	498.297842	994.581131	-0.73125	-0.00036438	0.59987	0.00029891	-0.13138	-6.5466E-05	498.29818082549326	27.488	0.474	27.488	27.154	27.628	0					17	9	3	0	0	0	0.23612	1	9848	9848		75.043	30.666	1	191730			4681	6204	2537	2556	4781	4781					0.08362333339937322
ATNILTATRK	10	Unmodified	_ATNILTATRK_					0	0	0		ENST00000480906.5_1_3:195057651-195163594:-|nuORF;ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.8258056640625	2	544.824755	1087.63496	1.1795	0.00064263	0.60742	0.00033094	1.7869	0.00097357	544.8250149271279	22.26	0.1114	22.26	22.207	22.318	0					5	3	2	0	0	0	0.25899	1	6264	6264		72.243	17.467	1	70987			4682	33	2538	2557	4782	4782					0.09464505771666154
ATNILTATRK	10	Unmodified	_ATNILTATRK_					0	0	0		ENST00000480906.5_1_3:195057651-195163594:-|nuORF;ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.8250732421875	2	544.824755	1087.63496	0.32739	0.00017837	0.10895	5.936E-05	0.43634	0.00023773	544.8249517209948	22.492	0.16638	22.492	22.384	22.55	0					8	3	3	0	0	0	0.041183	1	7631	7631		112.3	31.841	1	680050			4683	33	2538	2557	4783	4783					0.09464505771666154
ATNKFITKDK	10	Unmodified	_ATNKFITKDK_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.3331298828125	2	583.332413	1164.65027	0.51165	0.00029846	0.59493	0.00034704	1.1066	0.0006455	583.3327455339534	16.501	0.10087	16.501	16.437	16.538	0					6	3	2	0	0	0	0.24594	1	3772	3772		80.455	21.673	1	179140			4684	2417	2539	2558	4784	4784					0.07453372568852501
ATNKFITKDK	10	Unmodified	_ATNKFITKDK_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.55841064453125	3	389.224034	1164.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.554	1	16.554	16.054	17.054	0								0	0	0	0.28286	1	3951	3951		53.597	17.279	1				4685	2417	2539	2558	4785	4785					0.07453372568852501
ATNKFITKDK	10	Unmodified	_ATNKFITKDK_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.2240295410156	3	389.224034	1164.65027	-0.69849	-0.00027187	0.48546	0.00018895	-0.21303	-8.2915E-05	389.22428490754413	16.705	0.16133	16.705	16.65	16.812	0					8	3	3	0	0	0	0.034064	1	4690	4690		115.23	62.143	1	1219800			4686	2417	2539	2558	4786	4786					0.07453372568852501
ATNKILVDMAK	11	Unmodified	_ATNKILVDMAK_					0	0	0		WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant;ENSG00000165392|ENST00000298139|WRN	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.8971252441406	3	401.897041	1202.66929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.932	1	28.932	28.432	29.432	0								0	0	0	0.4537	1	9376	9376		25.068	3.382	1				4687	5791	2540	2559	4787	4787					0.07606585868256843
ATNKIPSH	8	Unmodified	_ATNKIPSH_					0	0	0			REV__ENSG00000204131|ENST00000633930|NHSL2	REV__ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2380676269531	2	434.237784	866.461016	-0.44282	-0.00019229	-0.15513	-6.7364E-05	-0.59795	-0.00025965	434.2379766693073	21.1	0.35203	21.1	20.959	21.311	0					12	8	2	0	0	0	0.67394	1	6659	6659		37.159	0	1	150240	+		4688	17469	2541	2560	4788	4788					0.022443450661853603
ATNKITIIFK	10	Unmodified	_ATNKITIIFK_					0	0	0		RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant;ENSG00000174136|ENST00000513185|RGMB	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.8554077148438	2	574.855524	1147.69649	1.6305	0.00093731	-1.6844	-0.00096832	-0.053931	-3.1002E-05	574.8545819776813	34.048	0.19494	34.048	33.959	34.154	0					9	5	2	0	0	0	0.28373	1	12653	12653		65.278	23.851	1	233020			4689	6472	2542	2561	4789	4789					0.12855437470943798
ATNKITIIFK	10	Unmodified	_ATNKITIIFK_					0	0	0		RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant;ENSG00000174136|ENST00000513185|RGMB	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	383.57220458984375	3	383.572775	1147.69649	-1.1554	-0.00044318	0.088058	3.3777E-05	-1.0673	-0.0004094	383.57299272153296	33.838	0.092079	33.838	33.777	33.869	0					5	3	2	0	0	0	0.59255	1	11377	11377		35.178	5.6275	1	46173			4690	6472	2542	2561	4790	4790					0.12855437470943798
ATNKITIIFK	10	Unmodified	_ATNKITIIFK_					0	0	0		RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant;ENSG00000174136|ENST00000513185|RGMB	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.8560791015625	2	574.855524	1147.69649	1.9192	0.0011033	-0.98811	-0.00056802	0.93111	0.00053525	574.8550233634614	34.004	0.2351	34.004	33.95	34.185	0					9	5	2	0	0	0	0.16365	1	13081	13081		72.243	0	1	256390			4691	6472	2542	2561	4791	4791					0.12855437470943798
ATNKITIIFK	10	Unmodified	_ATNKITIIFK_					0	0	0		RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant;ENSG00000174136|ENST00000513185|RGMB	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.9073181152344	3	383.572775	1147.69649	0.31956	0.00012257	-0.80162	-0.00030748	-0.48206	-0.00018491	383.57270428201593	34.027	0.27837	34.027	33.906	34.185	0					14	6	3	0	0	0	0.18814	1	13082	13082		80.916	50.347	1	243530			4692	6472	2542	2561	4792	4792					0.12855437470943798
ATNKITIIFK	10	Unmodified	_ATNKITIIFK_					0	0	0		RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant;ENSG00000174136|ENST00000513185|RGMB	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.5724182128906	3	383.572775	1147.69649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.821	1	33.821	33.321	34.321	0								0	0	0	0.10198	1	11910	11910		79.489	48.92	1				4693	6472	2542	2561	4793	4793					0.12855437470943798
ATNNMNLSR	9	Unmodified	_ATNNMNLSR_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.N1559H|1|0.32|ENSG00000092148|chr14:31128696-31128696|T/G|missense_variant;ENST00000556004.1_1_14:31596982-31597923:-|nuORF	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.74871826171875	2	510.74819	1019.48183	1.0845	0.00055389	0.12799	6.5372E-05	1.2125	0.00061926	510.74826471866766	20.834	0.12138	20.834	20.769	20.89	0					8	5	2	0	0	0	0.061298	1	5644	5644		91.265	27.058	1	104760			4694	1868	2543	2562	4794	4794					-0.027134326164627964
ATNNMNLSR	9	Unmodified	_ATNNMNLSR_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.N1559H|1|0.32|ENSG00000092148|chr14:31128696-31128696|T/G|missense_variant;ENST00000556004.1_1_14:31596982-31597923:-|nuORF	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7483825683594	2	510.74819	1019.48183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.203	1	21.203	20.703	21.703	0								0	0	0	0.054877	1	6702	6702		84.817	21.511	1				4695	1868	2543	2562	4795	4795					-0.027134326164627964
ATNNMNLSR	9	Unmodified	_ATNNMNLSR_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.N1559H|1|0.32|ENSG00000092148|chr14:31128696-31128696|T/G|missense_variant;ENST00000556004.1_1_14:31596982-31597923:-|nuORF	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.7486572265625	2	510.74819	1019.48183	-0.42095	-0.000215	0.71057	0.00036292	0.28962	0.00014792	510.7486815448143	20.844	0.15216	20.844	20.786	20.938	0					9	5	2	0	0	0	0.090954	1	5891	5891		81.525	32.083	1	164100			4696	1868	2543	2562	4796	4796					-0.027134326164627964
ATNNMNLSR	9	Unmodified	_ATNNMNLSR_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.N1559H|1|0.32|ENSG00000092148|chr14:31128696-31128696|T/G|missense_variant;ENST00000556004.1_1_14:31596982-31597923:-|nuORF	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7486572265625	2	510.74819	1019.48183	1.2075	0.00061674	-0.58022	-0.00029635	0.62731	0.0003204	510.74816636669794	21.07	0.21253	21.07	20.964	21.176	0					7	4	3	0	0	0	0.014648	1	6939	6939		131.12	51.665	1	1207800			4697	1868	2543	2562	4797	4797					-0.027134326164627964
ATNNMNLSR	9	Unmodified	_ATNNMNLSR_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.N1559H|1|0.32|ENSG00000092148|chr14:31128696-31128696|T/G|missense_variant;ENST00000556004.1_1_14:31596982-31597923:-|nuORF	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.748291015625	2	510.74819	1019.48183	0.31219	0.00015945	0.11961	6.1088E-05	0.4318	0.00022054	510.7483462166596	20.947	0.16683	20.947	20.825	20.992	0					6	4	2	0	0	0	0.24169	1	5979	5979		56.632	17.379	1	174590			4698	1868	2543	2562	4798	4798					-0.027134326164627964
ATNNMNLSR	9	Unmodified	_ATNNMNLSR_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.N1559H|1|0.32|ENSG00000092148|chr14:31128696-31128696|T/G|missense_variant;ENST00000556004.1_1_14:31596982-31597923:-|nuORF	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.74932861328125	2	510.74819	1019.48183	3.0621	0.001564	-0.97455	-0.00049775	2.0875	0.0010662	510.7477894325364	21.068	0.11758	21.068	21.008	21.126	0					4	2	2	0	0	0	0.28504	1	6811	6811		51.528	9.1316	1	421900			4699	1868	2543	2562	4799	4799					-0.027134326164627964
ATNPQLAAVLR	11	Unmodified	_ATNPQLAAVLR_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.3386840820312	2	577.33803	1152.66151	1.527	0.00088162	-0.30763	-0.00017761	1.2194	0.00070401	577.3380620415198	36.327	0.25866	36.327	36.211	36.469	0					10	7	2	0	0	0	0.2472	1	13699	13699		68.626	20.666	1	83560			4700	6026	2544	2563	4800	4800					0.09128194662980604
ATNPTQKTK	9	Unmodified	_ATNPTQKTK_					0	0	0		ENST00000497706.5_1_6:31865631-31903710:+|nuORF;nc|ENSG00000166278|P06681-2|C2;nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2	ENST00000497706.5_1_6:31865631-31903710:+|nuORF	ENST00000497706.5_1_6:31865631-31903710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.77490234375	2	494.774731	987.534909	-0.75663	-0.00037436	0.63063	0.00031202	-0.126	-6.2341E-05	494.77509544944223	11.503	0.28274	11.503	11.26	11.542	0					22	9	3	0	0	0	0.0076184	1	2337	2337		146.79	26.479	1	1170500			4701	5883	2545	2564	4801	4801					0.040642684378553895
ATNRERLSK	9	Unmodified	_ATNRERLSK_					0	0	0			REV__ENST00000354960.7_1_4:120550015-120550123:-|nuORF	REV__ENST00000354960.7_1_4:120550015-120550123:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8721618652344	3	358.871995	1073.59415	-0.063114	-2.265E-05	0.19522	7.0061E-05	0.13211	4.7411E-05	358.8722234319181	11.775	0.087451	11.775	11.709	11.797	0					8	4	2	0	0	0	0.36892	1	2337	2337		44.377	5.1244	1	107220	+		4702	18505	2546	2565	4802	4802					0.06030164452022291
ATNSMRPKQ	9	Oxidation (M)	_ATNSM(Oxidation (M))RPKQ_		ATNSM(1)RPKQ		ATNSM(42)RPKQ	0	0	1			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.17706298828125	3	350.178319	1047.51313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.21	1	12.21	11.71	12.71	0								0	0	0	0.2591	1	2523	2523		42.396	8.4745	1		+		4703	16181	2547	2566	4803	4803		621			-0.008728595823640717
ATNSSLIK	8	Unmodified	_ATNSSLIK_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.2400207519531	2	417.239993	832.465432	-2.4117	-0.0010063	2.0706	0.00086395	-0.3411	-0.00014232	417.24082808752905	22.874	0.13987	22.874	22.812	22.952	0					5	3	2	0	0	0	0.67836	1	6892	6892		36.447	2.9312	1	78496			4704	7575	2548	2567	4804	4804					0.04249809489112977
ATNSSMFLK	9	Unmodified	_ATNSSMFLK_					0	0	0		COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant;nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7528076171875	2	499.75241	997.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.385	1	30.385	29.885	30.885	0								0	0	0	0.16453	1	9976	9976		56.434	3.4971	1				4705	589	2549	2568	4805	4805					-0.008578786998214127
ATNSSMFLK	9	Unmodified	_ATNSSMFLK_					0	0	0		COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant;nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.752197265625	2	499.75241	997.490267	-0.40336	-0.00020158	-0.06008	-3.0025E-05	-0.46344	-0.00023161	499.75242253812706	30.361	0.27045	30.361	30.262	30.533	0					12	6	3	0	0	0	0.029571	1	10339	10339		109.44	39.811	1	483650			4706	589	2549	2568	4806	4806					-0.008578786998214127
ATNSSMFLK	9	Unmodified	_ATNSSMFLK_					0	0	0		COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant;nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7520751953125	2	499.75241	997.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.554	1	30.554	30.054	31.054	0								0	0	0	7.7861E-06	1	11326	11326		204.42	46.35	1				4707	589	2549	2568	4807	4807					-0.008578786998214127
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2645568847656	2	509.264196	1016.51384	0.97834	0.00049823	-0.048424	-2.4661E-05	0.92991	0.00047357	509.2640120317567	20.639	0.18313	20.639	20.558	20.741	0					8	5	2	0	0	0	0.06456	1	5550	5550		104.42	40.89	1	132920			4708	1224	2550	2569	4808	4808					0.006242583383141209
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2642517089844	2	509.264196	1016.51384	0.93223	0.00047475	-0.79028	-0.00040246	0.14194	7.2287E-05	509.2638885976148	20.937	0.25789	20.937	20.848	21.106	0					16	6	4	0	0	0	0.0021387	1	6584	6584		174.86	33.344	1	1536400			4709	1224	2550	2569	4809	4809					0.006242583383141209
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2641296386719	2	509.264196	1016.51384	0.18366	9.3531E-05	-0.40303	-0.00020525	-0.21937	-0.00011172	509.264010446098	20.699	0.19267	20.699	20.599	20.792	0					6	4	2	0	0	0	0.041183	1	5880	5880		112.3	40.418	1	284510			4710	1224	2550	2569	4810	4810					0.006242583383141209
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2642822265625	2	509.264196	1016.51384	-0.044807	-2.2819E-05	0.21821	0.00011113	0.1734	8.8308E-05	509.2643240233713	20.855	0.217	20.855	20.743	20.96	0					10	4	3	0	0	0	0.010919	1	6703	6703		139.38	43.348	1	583760			4711	1224	2550	2569	4811	4811					0.006242583383141209
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2643737792969	2	509.264196	1016.51384	1.342	0.00068343	-0.80371	-0.0004093	0.53828	0.00027413	509.26356670410047	20.836	0.26551	20.836	20.726	20.992	0					11	5	3	0	0	0	0.087581	1	6695	6695		97.597	25.719	1	1378600			4712	1224	2550	2569	4812	4812					0.006242583383141209
ATNTTTSNCTV	11	Carbamidomethyl (C)	_ATNTTTSNC(Carbamidomethyl (C))TV_	ATNTTTSNC(1)TV		ATNTTTSNC(53)TV		0	1	0			REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.9236450195312	2	585.258785	1168.50302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.567	1	20.567	20.067	21.067	0								0	0	0	0.29313	1	6402	6402		53.089	7.1167	1		+		4713	21588	2551	2570	4813	4813	741				-0.07449512098287414
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.P303Tfs*5|1|0.16|ENSG00000047315|chr4:57005248-57005249|-/A|frameshift_variant;POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant;POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.3007202148438	2	557.300581	1112.58661	1.4245	0.00079387	-0.82112	-0.00045761	0.60337	0.00033626	557.3000056414767	33.596	0.22608	33.596	33.493	33.719	0					22	8	4	0	0	0	0.0049346	1	10937	10937		166.07	113.13	1	318680			4714	1217	2552	2571	4814	4814					0.03482012131757983
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.P303Tfs*5|1|0.16|ENSG00000047315|chr4:57005248-57005249|-/A|frameshift_variant;POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant;POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.3005981445312	2	557.300581	1112.58661	0.11804	6.5782E-05	-0.059515	-3.3168E-05	0.058522	3.2614E-05	557.3007720144249	33.652	0.27644	33.652	33.565	33.842	0					26	10	3	0	0	0	0.010125	1	11311	11311		142.36	87.639	1	684170			4715	1217	2552	2571	4815	4815					0.03482012131757983
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.P303Tfs*5|1|0.16|ENSG00000047315|chr4:57005248-57005249|-/A|frameshift_variant;POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant;POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.30078125	2	557.300581	1112.58661	1.7197	0.0009584	-2.0517	-0.0011434	-0.33196	-0.000185	557.2998655359137	33.871	0.43142	33.871	33.753	34.185	0					27	10	4	0	0	0	8.9069E-05	1	12990	12990		191.45	111.74	1	2251400			4716	1217	2552	2571	4816	4816					0.03482012131757983
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.P303Tfs*5|1|0.16|ENSG00000047315|chr4:57005248-57005249|-/A|frameshift_variant;POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant;POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.3016357421875	2	557.300581	1112.58661	1.1255	0.00062724	-0.52117	-0.00029045	0.60432	0.00033679	557.3005995126005	33.643	0.28521	33.643	33.533	33.818	0					14	8	2	0	0	0	0.011557	1	11838	11838		136.99	76.871	1	421260			4717	1217	2552	2571	4817	4817					0.03482012131757983
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.P303Tfs*5|1|0.16|ENSG00000047315|chr4:57005248-57005249|-/A|frameshift_variant;POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant;POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3007202148438	2	557.300581	1112.58661	1.8242	0.0010166	-1.8788	-0.001047	-0.054588	-3.0422E-05	557.299873743328	33.808	0.36902	33.808	33.732	34.101	0					21	8	4	0	0	0	0.0013826	1	12895	12895		178.55	115.01	1	3174300			4718	1217	2552	2571	4818	4818					0.03482012131757983
ATNTVYVFAKK	11	Unmodified	_ATNTVYVFAKK_					0	0	0		POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.P303Tfs*5|1|0.16|ENSG00000047315|chr4:57005248-57005249|-/A|frameshift_variant;POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.5675354003906	3	414.567801	1240.68157	1.0346	0.00042893	-2.1081	-0.00087395	-1.0735	-0.00044502	414.56709938872217	27.296	0.26337	27.296	27.209	27.472	0					9	6	2	0	0	0	0.57554	1	9532	9532		38.714	2.3964	1	338560			4719	1217	2553	2572	4819	4819					0.07085945602921129
ATNVSPEKAP	10	Unmodified	_ATNVSPEKAP_					0	0	0			REV__NR3C2|p.A712T|1|0.36|ENSG00000151623|chr4:148154782-148154782|C/T|missense_variant	REV__NR3C2|p.A712T|1|0.36|ENSG00000151623|chr4:148154782-148154782|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.5150146484375	3	338.513585	1012.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.051	1	12.051	11.551	12.551	0								0	0	0	0.4201	1	2619	2619		26.063	8.2302	1		+		4720	15483	2554	2573	4820	4820					0.013165622009523759
ATNVVRLLLG	10	Unmodified	_ATNVVRLLLG_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.5576171875	3	352.557236	1054.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.675	1	10.675	10.175	11.175	0								0	0	0	0.4201	1	2042	2042		17.468	0	1				4721	2180	2555	2574	4821	4821					0.12473997639654044
ATNYITRNK	9	Unmodified	_ATNYITRNK_					0	0	0		ENST00000466614.1_1_22:30983271-30987820:-|nuORF;nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.86474609375	3	360.864729	1079.57236	0.45349	0.00016365	-0.10365	-3.7405E-05	0.34984	0.00012624	360.8645994116356	17.844	0.089664	17.844	17.801	17.89	0					4	2	2	0	0	0	0.54267	1	4346	4346		51.193	19.663	1	135220			4722	1965	2556	2575	4822	4822					0.03575359703449976
ATNYITRNK	9	Unmodified	_ATNYITRNK_					0	0	0		ENST00000466614.1_1_22:30983271-30987820:-|nuORF;nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7938232421875	2	540.793455	1079.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.849	1	17.849	17.349	18.349	0								0	0	0	0.0016356	1	4338	4338		123.21	55.714	1				4723	1965	2556	2575	4823	4823					0.03575359703449976
ATNYITRNK	9	Unmodified	_ATNYITRNK_					0	0	0		ENST00000466614.1_1_22:30983271-30987820:-|nuORF;nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.86468505859375	3	360.864729	1079.57236	0.72991	0.0002634	-0.97331	-0.00035123	-0.2434	-8.7835E-05	360.86439126920334	18.134	0.13858	18.134	18.082	18.221	0					12	3	5	0	0	0	0.56424	1	5257	5257		40.058	18.372	1	2801200			4724	1965	2556	2575	4824	4824					0.03575359703449976
ATNYITRNK	9	Unmodified	_ATNYITRNK_					0	0	0		ENST00000466614.1_1_22:30983271-30987820:-|nuORF;nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7940063476562	2	540.793455	1079.57236	0.28045	0.00015166	0.57595	0.00031147	0.85639	0.00046313	540.7935773023961	18.167	0.31781	18.167	18.067	18.385	0					17	7	3	0	0	0	0.015992	1	5250	5250		128.6	61.109	1	3075200			4725	1965	2556	2575	4825	4825					0.03575359703449976
ATNYITRNK	9	Unmodified	_ATNYITRNK_					0	0	0		ENST00000466614.1_1_22:30983271-30987820:-|nuORF;nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7932739257812	2	540.793455	1079.57236	-0.12962	-7.01E-05	0.32286	0.0001746	0.19323	0.0001045	540.793310788314	17.863	0.12795	17.863	17.782	17.909	0					5	3	2	0	0	0	0.13726	1	4571	4571		70.816	16.04	1	257040			4726	1965	2556	2575	4826	4826					0.03575359703449976
ATNYITRNK	9	Unmodified	_ATNYITRNK_					0	0	0		ENST00000466614.1_1_22:30983271-30987820:-|nuORF;nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	ENST00000466614.1_1_22:30983271-30987820:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7939453125	2	540.793455	1079.57236	0.30987	0.00016757	0.80586	0.0004358	1.1157	0.00060338	540.7938917257227	18.129	0.21977	18.129	18.022	18.241	0					11	4	4	0	0	0	0.0076184	1	5500	5500		146.79	59.089	1	698930			4727	1965	2556	2575	4827	4827					0.03575359703449976
ATPAEVRYI	9	Unmodified	_ATPAEVRYI_					0	0	0		nc|ENSG00000107338|Q15464-2|SHB;ENSG00000107338|ENST00000377707|SHB	nc|ENSG00000107338|Q15464-2|SHB	nc|ENSG00000107338|Q15464-2|SHB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2801818847656	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.671	1	33.671	33.171	34.171	0								0	0	0	0.16453	1	11842	11842		40.778	0	1				4728	2477	2557	2576	4828	4828					0.03621456443238458
ATPEKSLHDK	10	Unmodified	_ATPEKSLHDK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	nc|ENSG00000077097|Q02880-2|TOP2B;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.2989501953125	2	563.29857	1124.58259	1.2575	0.00070835	-0.4327	-0.00024374	0.82479	0.00046461	563.2982490758314	14.227	0.10542	14.227	14.177	14.282	0					7	4	2	0	0	0	0.59255	1	2897	2897		35.178	2.3658	1	143550			4729	1574;22557	2558	2577	4829	4829					0.02527922638023483
ATPEKSLHDK	10	Unmodified	_ATPEKSLHDK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	nc|ENSG00000077097|Q02880-2|TOP2B;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.8011474609375	2	563.29857	1124.58259	-1.0209	-0.00057506	1.7327	0.00097603	0.71183	0.00040097	563.8011382087241	14.28	0.062612	14.28	14.249	14.312	0					6	2	3	0	0	0	0.64646	1	2996	2996		28.577	0.49524	1	128990			4730	1574;22557	2558	2577	4830	4830					0.02527922638023483
ATPGAQLAP	9	Unmodified	_ATPGAQLAP_					0	0	0		nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000095539|ENST00000210633|SEMA4G	nc|ENSG00000095539|Q9NTN9|SEMA4G	nc|ENSG00000095539|Q9NTN9|SEMA4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.22662353515625	2	413.226885	824.439217	-0.072855	-3.0106E-05	-0.26348	-0.00010888	-0.33633	-0.00013898	413.2267570198824	15.403	1.0877	15.403	15.182	16.27	0					56	37	2	0	0	0	0.32741	1	3414	3414		47.916	1.9636	1	282350			4731	1903	2559	2578	4831	4831					0.019975403176090367
ATPGARRP	8	Unmodified	_ATPGARRP_					0	0	0			REV__MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant	REV__MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.238525390625	2	413.238119	824.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.34	1	45.34	44.84	45.84	0								0	0	0	1.7419	1	15449	15449		25.45	3.7478	1		+		4732	16496	2560	2579	4832	4832					0.04243184505901354
ATPGPLSRCR	10	Unmodified	_ATPGPLSRCR_					0	0	0			REV__ENST00000298532.2_1_9:139276772-139277807:-|nuORF	REV__ENST00000298532.2_1_9:139276772-139277807:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.282958984375	2	529.2822	1056.54985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.004	1	36.004	35.504	36.504	0								0	0	0	0.40797	1	12861	12861		28.081	3.8787	1		+		4733	18192	2561	2580	4833	4833					0.02383437034200142
ATPGTLVKV	9	Unmodified	_ATPGTLVKV_					0	0	0			REV__tr|U7T6U8|U7T6U8_FUSNUConjugaltransferproteinTrbCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00015PE=4SV=1	REV__tr|U7T6U8|U7T6U8_FUSNUConjugaltransferproteinTrbCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00015PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.27410888671875	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.506	1	41.506	41.006	42.006	0								0	0	0	0.27025	1	15772	15772		40.778	5.1599	1		+		4734	22209	2562	2581	4834	4834					0.08623259419903206
ATPHWSLIGV	10	Unmodified	_ATPHWSLIGV_					0	0	0			REV__CORO6|p.R133C|1|0.18|ENSG00000167549|chr17:29619114-29619114|G/A|missense_variant	REV__CORO6|p.R133C|1|0.18|ENSG00000167549|chr17:29619114-29619114|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.86505126953125	3	360.86607	1079.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.955	1	17.955	17.455	18.455	0								0	0	0	0.4201	1	4587	4587		23.523	2.5758	1		+		4735	12624	2563	2582	4835	4835					0.03977449197191163
ATPKKASKPK	10	Unmodified	_ATPKKASKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.3327026367188	2	528.332216	1054.64988	0.10815	5.7141E-05	0.64758	0.00034214	0.75574	0.00039928	528.3324378700177	10.688	0.076084	10.688	10.631	10.707	0					9	4	3	0	0	0	0.1725	1	2036	2036		80.455	27.518	1	470020			4736	7298	2564	2583	4836	4836					0.12473997639654044
ATPKKASKPK	10	Unmodified	_ATPKKASKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.55694580078125	3	352.557236	1054.64988	0.49342	0.00017396	-0.95515	-0.00033675	-0.46173	-0.00016279	352.5568186609189	10.666	0.043792	10.666	10.647	10.691	0					4	2	2	0	0	0	0.72229	1	2038	2038		18.531	3.6662	1	91011			4737	7298	2564	2583	4837	4837					0.12473997639654044
ATPKKASKPK	10	Unmodified	_ATPKKASKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.3319702148438	2	528.332216	1054.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.519	1	10.519	10.019	11.019	0								0	0	0	0.4201	1	2029	2029		24.519	12.312	1				4738	7298	2564	2583	4838	4838					0.12473997639654044
ATPKKASKPK	10	Unmodified	_ATPKKASKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3328247070312	2	528.332216	1054.64988	0.2853	0.00015073	0.50076	0.00026457	0.78606	0.0004153	528.3324528512802	10.679	0.22226	10.679	10.631	10.853	0					9	5	2	0	0	0	0.087581	1	2069	2069		85.862	43.466	1	3424500			4739	7298	2564	2583	4839	4839					0.12473997639654044
ATPKKASKPK	10	Unmodified	_ATPKKASKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3328247070312	2	528.332216	1054.64988	3.4655	0.0018309	-0.65694	-0.00034708	2.8086	0.0014839	528.3317045525501	10.664	0.058151	10.664	10.628	10.686	0					8	3	3	0	0	0	0.42408	1	2037	2037		49.536	0	1	275620			4740	7298	2564	2583	4840	4840					0.12473997639654044
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.8297424316406	2	500.829309	999.644065	0.3987	0.00019968	0.31111	0.00015581	0.7098	0.00035549	500.82960520969357	11.373	0.10439	11.373	11.303	11.407	0					10	6	2	0	0	0	0.43488	1	2128	2128		39.253	3.6345	1	109160			4741	3386	2565	2584	4841	4841					0.1442289912798742
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.8291015625	2	500.829309	999.644065	0.66439	0.00033275	-0.8143	-0.00040783	-0.14991	-7.5081E-05	500.828915156983	11.579	0.17541	11.579	11.52	11.695	0					21	6	4	0	0	0	0.014648	1	2257	2257		126.24	56.615	1	1695100			4742	3386	2565	2584	4842	4842					0.1442289912798742
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.8296813964844	2	500.829309	999.644065	-0.98806	-0.00049485	1.5825	0.00079256	0.59444	0.00029772	500.8300908138562	11.357	0.16696	11.357	11.302	11.469	0					21	10	3	0	0	0	0.052435	1	2179	2179		88.177	19.39	1	699350			4743	3386	2565	2584	4843	4843					0.1442289912798742
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.8294372558594	2	500.829309	999.644065	0.92156	0.00046155	-1.1742	-0.00058808	-0.25264	-0.00012653	500.8288319687396	11.654	0.3257	11.654	11.542	11.868	0					25	9	3	0	0	0	0.032383	1	2416	2416		101.6	16.685	1	10344000			4744	3386	2565	2584	4844	4844					0.1442289912798742
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.82989501953125	2	500.829309	999.644065	0.15113	7.569E-05	0.80332	0.00040233	0.95445	0.00047802	500.82970823887047	11.363	0.17993	11.363	11.301	11.481	0					22	11	3	0	0	0	0.19952	1	2145	2145		54.776	26.894	1	226490			4745	3386	2565	2584	4845	4845					0.1442289912798742
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.2220153808594	3	334.221965	999.644065	-1.9074	-0.00063749	1.886	0.00063033	-0.021404	-7.1537E-06	334.2225271115433	11.376	0.11725	11.376	11.312	11.429	0					14	7	3	0	0	0	0.61124	1	2148	2148		13.454	1.2474	1	70306			4746	3386	2565	2584	4846	4846					0.1442289912798742
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.8291015625	2	500.829309	999.644065	1.1079	0.00055488	-0.73268	-0.00036695	0.37523	0.00018793	500.82906654445924	11.576	0.19389	11.576	11.515	11.709	0					23	7	5	0	0	0	0.037712	1	2267	2267		95.815	21.56	1	8846500			4747	3386	2565	2584	4847	4847					0.1442289912798742
ATPKKSIKK	9	Unmodified	_ATPKKSIKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.2215881347656	3	334.221965	999.644065	1.6257	0.00054336	-1.3869	-0.00046354	0.23882	7.9819E-05	334.22147809701414	11.576	0.13531	11.576	11.515	11.651	0					14	4	4	0	0	0	0.53064	1	2269	2269		29.17	1.0886	1	1038900			4748	3386	2565	2584	4848	4848					0.1442289912798742
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	323.87445068359375	3	323.874565	968.601866	0.28861	9.3473E-05	-0.52758	-0.00017087	-0.23897	-7.7396E-05	323.87440364079254	12.963	0.10419	12.963	12.912	13.016	0					10	4	3	0	0	0	0.41113	1	2496	2496		40.058	16.535	1	1527600			4749	5871	2566	2585	4849	4849					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	323.8746643066406	3	323.874565	968.601866	0.53495	0.00017326	-0.35683	-0.00011557	0.17812	5.7689E-05	323.8744599177345	13.224	0.35052	13.224	13.105	13.456	0					22	9	3	0	0	0	0.41113	1	2950	2950		56.434	26.116	1	7311000			4750	5871	2566	2585	4850	4850					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.2092590332031	3	323.874565	968.601866	-0.6677	-0.00021625	0.43544	0.00014103	-0.23226	-7.5223E-05	323.87461998062463	12.963	0.10634	12.963	12.92	13.027	0					10	4	3	0	0	0	0.50858	1	2611	2611		54.722	16.911	1	259140			4751	5871	2566	2585	4851	4851					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.30780029296875	2	485.30821	968.601866	0.65463	0.0003177	-1.3106	-0.00063606	-0.656	-0.00031836	485.3074754524435	13.195	0.3344	13.195	13.098	13.433	0					21	7	4	0	0	0	0.037569	1	3165	3165		101.6	39.493	1	11934000			4752	5871	2566	2585	4852	4852					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.30841064453125	2	485.30821	968.601866	0.3353	0.00016272	-0.70057	-0.00033999	-0.36527	-0.00017727	485.3078707879398	12.94	0.24019	12.94	12.87	13.11	0					24	11	4	0	0	0	0.098791	1	2548	2548		79.713	28.377	1	1038800			4753	5871	2566	2585	4853	4853					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.308349609375	2	485.30821	968.601866	-0.25039	-0.00012151	-0.13422	-6.514E-05	-0.38461	-0.00018665	485.30807546678363	12.924	0.27466	12.924	12.864	13.139	0					30	13	4	0	0	0	0.020674	1	2545	2545		120.87	49.573	1	1429900			4754	5871	2566	2585	4854	4854					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.3079528808594	2	485.30821	968.601866	-0.56747	-0.0002754	-0.38646	-0.00018755	-0.95393	-0.00046295	485.307960644886	13.168	0.57124	13.168	13.018	13.589	0					28	12	4	0	0	0	0.0049871	1	2975	2975		158.07	64.068	1	13405000			4755	5871	2566	2585	4855	4855					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.307861328125	2	485.30821	968.601866	0.84494	0.00041006	-1.3304	-0.00064567	-0.48549	-0.00023561	485.307658059747	13.15	0.76864	13.15	13.049	13.817	0					34	16	3	0	0	0	0.019882	1	2968	2968		122.18	48.201	1	27102000			4756	5871	2566	2585	4856	4856					0.11630923719621933
ATPLDFPSKK	10	Unmodified	_ATPLDFPSKK_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;ENST00000482693.1_1_11:64540804-64545891:-|nuORF;SF1|p.P74Lfs*63|1|0.43|ENSG00000168066|chr11:64773445-64773445|G/-|frameshift_variant;SF1|p.S182Lfs*2|1|0.29|ENSG00000168066|chr11:64769552-64769552|C/-|frameshift_variant;ENST00000463343.1_1_11:64543889-64545891:-|nuORF	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3090209960938	2	552.308406	1102.60226	0.084634	4.6744E-05	0.68533	0.00037852	0.76997	0.00042526	552.3087578994982	27.487	0.61144	27.487	27.186	27.798	0					30	12	3	0	0	0	0.46989	1	9910	9910		48.602	14.429	1	326680			4757	6055	2567	2586	4857	4857					0.055062986488110255
ATPLMKRQTAL	11	Oxidation (M)	_ATPLM(Oxidation (M))KRQTAL_		ATPLM(1)KRQTAL		ATPLM(54)KRQTAL	0	0	1			REV__ENST00000227155.8_1_11:44640863-44641010:+|nuORF	REV__ENST00000227155.8_1_11:44640863-44641010:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.90435791015625	3	415.904307	1244.69109	-0.34662	-0.00014416	0.26447	0.00010999	-0.082146	-3.4165E-05	415.904720745846	31.429	0.31409	31.429	31.319	31.633	0					11	6	3	0	0	0	0.38061	1	11760	11760		53.597	8.5747	1	256730	+		4758	17903	2568	2587	4858	4858		672			0.07853390616833167
ATPLSTLSL	9	Unmodified	_ATPLSTLSL_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7630310058594	2	451.7633	901.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.52	1	51.52	51.02	52.02	0								0	0	0	0.19749	1	20144	20144		51.335	5.3835	1				4759	940	2569	2588	4859	4859					0.057352493203779886
ATPPLVERVP	10	Unmodified	_ATPPLVERVP_					0	0	0			REV__ENST00000399151.3_1_21:37571519-37572772:+|nuORF	REV__ENST00000399151.3_1_21:37571519-37572772:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.2135314941406	3	360.213358	1077.61824	0.11777	4.2422E-05	0.053324	1.9208E-05	0.17109	6.163E-05	360.2132187731557	18.17	0.11382	18.17	18.096	18.209	0					9	4	3	0	0	0	0.64162	1	4481	4481		29.17	5.6474	1	75312	+		4760	18931	2570	2589	4860	4860					0.0825400488570267
ATPPPRMDLL	10	Unmodified	_ATPPPRMDLL_					0	0	0			REV__ENSG00000182256|ENST00000615808|GABRG3	REV__ENSG00000182256|ENST00000615808|GABRG3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.8694152832031	3	370.870715	1109.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.533	1	30.533	30.033	31.033	0								0	0	0	0.40063	1	10409	10409		30.318	4.7437	1		+		4761	16875	2571	2590	4861	4861					0.03990358633973301
ATPPVTPALT	10	Unmodified	_ATPPVTPALT_					0	0	0		ENST00000505141.5_1_4:175896558-175896660:+|nuORF	ENST00000505141.5_1_4:175896558-175896660:+|nuORF	ENST00000505141.5_1_4:175896558-175896660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7747802734375	2	484.276575	966.538597	-0.1953	-9.4579E-05	-1.8228	-0.00088274	-2.0181	-0.00097732	484.27643324741433	34.57	0.37264	34.57	34.4	34.772	0					13	9	2	0	0	0	0.58896	1	12859	12859		35.618	0	1	337560			4762	10179	2572	2591	4862	4862					0.05398938211692439
ATPQALAYAE	10	Unmodified	_ATPQALAYAE_					0	0	0		SLC26A11|p.I63T|1|0.11|ENSG00000181045|chr17:80221748-80221748|T/C|missense_variant	SLC26A11|p.I63T|1|0.11|ENSG00000181045|chr17:80221748-80221748|T/C|missense_variant	SLC26A11|p.I63T|1|0.11|ENSG00000181045|chr17:80221748-80221748|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.761962890625	2	517.761289	1033.50803	1.5371	0.00079587	-1.5359	-0.00079521	0.0012708	6.5799E-07	517.7609131027161	41.167	0.22233	41.167	41.079	41.301	0					11	9	2	0	0	0	0.38194	1	16170	16170		58.23	10.314	1	98254			4763	22406	2573	2592	4863	4863					-0.007388401733351202
ATPSKIAP	8	Unmodified	_ATPSKIAP_					0	0	0			REV__ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant	REV__ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.7315979003906	2	392.731803	783.449054	-1.2476	-0.00048997	1.3214	0.00051895	0.07379	2.898E-05	392.7322800828744	19.443	0.44514	19.443	19.243	19.688	0					23	13	2	0	0	0	0.7126	1	5262	5262		31.955	1.4512	1	70227	+		4764	16338	2574	2593	4864	4864					0.0486672832299746
ATPSPFQLG	9	Unmodified	_ATPSPFQLG_					0	0	0			REV__ENST00000485383.1_1_3:96068520-96068997:+|nuORF	REV__ENST00000485383.1_1_3:96068520-96068997:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2415771484375	2	459.239993	916.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.396	1	21.396	20.896	21.896	0								0	0	0	0.28996	1	6195	6195		37.159	1.5408	1		+		4765	19653	2575	2594	4865	4865					0.0038580948911430824
ATPTSPIRVK	10	Unmodified	_ATPTSPIRVK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3223266601562	2	535.321848	1068.62914	0.29132	0.00015595	0.33346	0.00017851	0.62478	0.00033446	535.3220012188735	23.086	0.46751	23.086	22.828	23.295	0					24	9	4	0	0	0	0.38194	1	7848	7848		58.23	6.8945	1	4086400			4766	7403	2576	2595	4866	4866					0.09757407259962747
ATPVPKSEPA	10	Unmodified	_ATPVPKSEPA_					0	0	0			REV__ABI3BP|p.K701Sfs*41|1|0.1|ENSG00000154175|chr3:100780137-100780137|T/-|frameshift_variant	REV__ABI3BP|p.K701Sfs*41|1|0.1|ENSG00000154175|chr3:100780137-100780137|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.8503112792969	3	332.850197	995.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.904	1	17.904	17.404	18.404	0								0	0	0	0.40797	1	4563	4563		28.081	0.19925	1		+		4767	12045	2577	2596	4867	4867					0.03081750206331435
ATPVSNTVM	9	Unmodified	_ATPVSNTVM_					0	0	0			REV__SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant	REV__SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2300109863281	2	460.23131	918.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.522	1	36.522	36.022	37.022	0								0	0	0	0.27939	1	13782	13782		39.253	0.44669	1		+		4768	13680	2578	2597	4868	4868					-0.014418541082022784
ATQALVVLV	9	Unmodified	_ATQALVVLV_					0	0	0			REV__ENSG00000215547|ENST00000400552|DEFB115	REV__ENSG00000215547|ENST00000400552|DEFB115	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.28936767578125	2	457.289485	912.564418	-0.43527	-0.00019905	-0.029391	-1.344E-05	-0.46466	-0.00021249	457.2894415292177	36.948	0.95451	36.948	36.233	37.187	0					45	19	3	0	0	0	0.57706	1	14291	14291		24.203	0	1	580910	+		4769	17600	2579	2598	4869	4869					0.10463832453990562
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.798828125	2	524.79854	1047.58253	0.69789	0.00036625	-0.24914	-0.00013075	0.44875	0.0002355	524.7980857297478	18.682	0.17824	18.682	18.611	18.789	0					6	5	2	0	0	0	0.22823	1	4683	4683		60.118	14.146	1	137540			4770	2076	2580	2599	4870	4870					0.06063967428713113
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7984619140625	2	524.79854	1047.58253	0.094373	4.9527E-05	0.13489	7.0792E-05	0.22927	0.00012032	524.7985848503727	19.001	0.23459	19.001	18.889	19.124	0					14	6	3	0	0	0	0.029571	1	5661	5661		93.143	41.951	1	812250			4771	2076	2580	2599	4871	4871					0.06063967428713113
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.2013244628906	3	350.201452	1047.58253	-0.82251	-0.00028804	0.97635	0.00034192	0.15384	5.3875E-05	350.20175698037355	18.683	0.18334	18.683	18.588	18.771	0					12	6	3	0	0	0	0.42902	1	4917	4917		39.253	4.1008	1	298980			4772	2076	2580	2599	4872	4872					0.06063967428713113
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.798583984375	2	524.79854	1047.58253	0.42451	0.00022278	-0.32569	-0.00017092	0.098828	5.1865E-05	524.7983771781251	18.677	0.14697	18.677	18.615	18.762	0					11	5	3	0	0	0	0.014413	1	4915	4915		139.97	60.258	1	555800			4773	2076	2580	2599	4873	4873					0.06063967428713113
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.798828125	2	524.79854	1047.58253	0.11752	6.1676E-05	0.53656	0.00028159	0.65408	0.00034326	524.7988055930945	18.908	0.16647	18.908	18.85	19.017	0					10	3	4	0	0	0	0.00014666	1	5896	5896		163.15	72.781	1	3057100			4774	2076	2580	2599	4874	4874					0.06063967428713113
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.2013854980469	3	350.201452	1047.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.793	1	18.793	18.293	19.293	0								0	0	0	0.31838	1	4975	4975		31.53	1.9791	1				4775	2076	2580	2599	4875	4875					0.06063967428713113
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(140)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.76904296875	2	517.768591	1033.52263	0.42571	0.00022042	-0.29678	-0.00015367	0.12892	6.6753E-05	517.768636780382	22.777	0.23391	22.777	22.684	22.918	0					22	7	4	0	0	0	0.011557	1	6468	6468		136.99	48.812	1	920750			4776	6170	2581	2600	4876	4876	261				0.007209087031696981
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(120)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7688598632812	2	517.768591	1033.52263	1.3127	0.00067966	-1.3901	-0.00071973	-0.077391	-4.007E-05	517.7679794148496	23.099	0.38915	23.099	22.887	23.277	0					16	9	3	0	0	0	0.023179	1	7609	7609		122.94	42.485	1	1259700			4777	6170	2581	2600	4877	4877	261				0.007209087031696981
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(170)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7692260742188	2	517.768591	1033.52263	0.048726	2.5229E-05	0.24272	0.00012567	0.29145	0.0001509	517.7689305157725	23.088	0.30586	23.088	22.958	23.263	0					19	6	4	0	0	0	0.0021387	1	7600	7600		174.86	68.182	1	5099100			4778	6170	2581	2600	4878	4878	261				0.007209087031696981
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(99)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.768798828125	2	517.768591	1033.52263	0.069789	3.6135E-05	0.57748	0.000299	0.64727	0.00033514	517.7690315326033	22.82	0.34534	22.82	22.693	23.039	0					29	12	3	0	0	0	0.080628	1	6747	6747		99.013	10.836	1	1779400			4779	6170	2581	2600	4879	4879	261				0.007209087031696981
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(150)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7684936523438	2	517.768591	1033.52263	1.5463	0.00080061	-1.2973	-0.00067171	0.24895	0.0001289	517.7681007357909	23.003	0.56864	23.003	22.744	23.312	0					27	11	4	0	0	0	0.0093015	1	7853	7853		145.46	52.265	1	12799000			4780	6170	2581	2600	4880	4880	261				0.007209087031696981
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(130)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7686767578125	2	517.768591	1033.52263	0.91634	0.00047445	-0.62735	-0.00032482	0.28899	0.00014963	517.768386766174	22.874	0.39955	22.874	22.694	23.094	0					19	9	4	0	0	0	0.012356	1	6876	6876		133.99	40.798	1	1353700			4781	6170	2581	2600	4881	4881	261				0.007209087031696981
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(150)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7686157226562	2	517.768591	1033.52263	-1.4362	-0.00074363	1.5477	0.00080136	0.1115	5.7729E-05	517.7694777296416	22.863	0.31154	22.863	22.767	23.079	0					18	7	3	0	0	0	0.0077833	1	6868	6868		154.01	44.533	1	2338300			4782	6170	2581	2600	4882	4882	261				0.007209087031696981
ATQCGSLIGK	10	Carbamidomethyl (C)	_ATQC(Carbamidomethyl (C))GSLIGK_	ATQC(1)GSLIGK		ATQC(160)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7687377929688	2	517.768591	1033.52263	1.566	0.00081083	-1.8206	-0.00094264	-0.25458	-0.00013181	517.7677704251878	23.03	0.71304	23.03	22.722	23.435	0					40	14	5	0	0	0	0.0060268	1	7733	7733		162.64	50.529	1	9663500			4783	6170	2581	2600	4883	4883	261				0.007209087031696981
ATQCGSLIGK	10	Unmodified	_ATQCGSLIGK_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.2586669921875	2	489.257859	976.501166	-0.033017	-1.6154E-05	1.5498	0.00075827	1.5168	0.00074212	489.25922598640096	25.676	0.16588	25.676	25.578	25.744	0					12	5	3	0	0	0	0.1998	1	7753	7753		79.489	16.183	1	129010			4784	6170	2581	2601	4884	4884					0.011975236744547146
ATQDILKALSK	11	Unmodified	_ATQDILKALSK_					0	0	0		MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant;MECOM|p.V498Sfs*27|1|0.34|ENSG00000085276|chr3:169115816-169115817|-/T|frameshift_variant;MECOM|p.P513Qfs*15|2|0.39|ENSG00000085276|chr3:169115772-169115772|A/-|frameshift_variant;MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant;MECOM|p.G611Efs*33|1|0.39|ENSG00000085276|chr3:169115476-169115476|C/-|frameshift_variant;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.57098388671875	3	396.571322	1186.69214	0.91131	0.0003614	-0.82327	-0.00032648	0.088045	3.4916E-05	396.5708825498508	36.943	0.25623	36.943	36.824	37.08	0					17	7	3	0	0	0	0.39337	1	13965	13965		52.167	24.523	1	295710			4785	1725	2582	2602	4885	4885					0.10625928257377382
ATQDILKALSK	11	Unmodified	_ATQDILKALSK_					0	0	0		MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant;MECOM|p.V498Sfs*27|1|0.34|ENSG00000085276|chr3:169115816-169115817|-/T|frameshift_variant;MECOM|p.P513Qfs*15|2|0.39|ENSG00000085276|chr3:169115772-169115772|A/-|frameshift_variant;MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant;MECOM|p.G611Efs*33|1|0.39|ENSG00000085276|chr3:169115476-169115476|C/-|frameshift_variant;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.3535766601562	2	594.353345	1186.69214	0.25841	0.00015359	-0.0017274	-1.0267E-06	0.25669	0.00015256	594.3534565596775	36.916	0.12151	36.916	36.854	36.975	0					6	3	2	0	0	0	0.2545	1	13958	13958		75.652	40.034	1	63598			4786	1725	2582	2602	4886	4886					0.10625928257377382
ATQDILKALSK	11	Unmodified	_ATQDILKALSK_					0	0	0		MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant;MECOM|p.V498Sfs*27|1|0.34|ENSG00000085276|chr3:169115816-169115817|-/T|frameshift_variant;MECOM|p.P513Qfs*15|2|0.39|ENSG00000085276|chr3:169115772-169115772|A/-|frameshift_variant;MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant;MECOM|p.G611Efs*33|1|0.39|ENSG00000085276|chr3:169115476-169115476|C/-|frameshift_variant;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.5714111328125	3	396.571322	1186.69214	0.09643	3.8242E-05	-0.17668	-7.0067E-05	-0.080252	-3.1826E-05	396.5712559394544	36.907	0.14204	36.907	36.839	36.981	0					6	4	2	0	0	0	0.73562	1	14399	14399		24.232	0.85391	1	78995			4787	1725	2582	2602	4887	4887					0.10625928257377382
ATQDILKALSK	11	Unmodified	_ATQDILKALSK_					0	0	0		MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant;MECOM|p.V498Sfs*27|1|0.34|ENSG00000085276|chr3:169115816-169115817|-/T|frameshift_variant;MECOM|p.P513Qfs*15|2|0.39|ENSG00000085276|chr3:169115772-169115772|A/-|frameshift_variant;MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant;MECOM|p.G611Efs*33|1|0.39|ENSG00000085276|chr3:169115476-169115476|C/-|frameshift_variant;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.5712890625	3	396.571322	1186.69214	-0.63987	-0.00025375	0.63802	0.00025302	-0.0018522	-7.3453E-07	396.5715222903587	36.851	0.26609	36.851	36.727	36.994	0					12	5	3	0	0	0	0.54316	1	14361	14361		41.08	1.0219	1	247760			4788	1725	2582	2602	4888	4888					0.10625928257377382
ATQDILKALSK	11	Unmodified	_ATQDILKALSK_					0	0	0		MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant;MECOM|p.V498Sfs*27|1|0.34|ENSG00000085276|chr3:169115816-169115817|-/T|frameshift_variant;MECOM|p.P513Qfs*15|2|0.39|ENSG00000085276|chr3:169115772-169115772|A/-|frameshift_variant;MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant;MECOM|p.G611Efs*33|1|0.39|ENSG00000085276|chr3:169115476-169115476|C/-|frameshift_variant;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.5712585449219	3	396.571322	1186.69214	0.39446	0.00015643	-0.61827	-0.00024519	-0.22381	-8.8758E-05	396.5710282548412	36.871	0.21629	36.871	36.761	36.977	0					11	4	3	0	0	0	0.23242	1	14382	14382		70.399	30.34	1	328440			4789	1725	2582	2602	4889	4889					0.10625928257377382
ATQEAFMKR	9	Unmodified	_ATQEAFMKR_					0	0	0		ENSG00000136872|ENST00000647789|ALDOB	ENSG00000136872|ENST00000647789|ALDOB	ENSG00000136872|ENST00000647789|ALDOB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2765502929688	2	541.276583	1080.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.077	1	21.077	20.577	21.577	0								0	0	0	0.16453	1	6932	6932		56.434	19.275	1				4790	4122	2583	2603	4890	4890					0.0015661494005598797
ATQEGEWKALK	11	Unmodified	_ATQEGEWKALK_					0	0	0		ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.8908386230469	3	420.890944	1259.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.77	1	25.77	25.27	26.27	0								0	0	0	0.41351	1	7792	7792		34.087	3.5176	1				4791	1765	2584	2604	4891	4891					0.031561672178895606
ATQEGEWKALK	11	Unmodified	_ATQEGEWKALK_					0	0	0		ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	630.8331909179688	2	630.832777	1259.651	-0.13828	-8.723E-05	0.64784	0.00040868	0.50956	0.00032145	630.8331993867711	26.009	0.21651	26.009	25.901	26.117	0					8	4	2	0	0	0	0.0028782	1	9269	9269		122.94	16.059	1	546260			4792	1765	2584	2604	4892	4892					0.031561672178895606
ATQEGEWKALK	11	Unmodified	_ATQEGEWKALK_					0	0	0		ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.890869140625	3	420.890944	1259.651	-0.32011	-0.00013473	-0.038252	-1.61E-05	-0.35836	-0.00015083	420.8909452664159	25.958	0.31898	25.958	25.849	26.168	0					16	6	4	0	0	0	0.18862	1	9121	9121		75.652	25.619	1	913520			4793	1765	2584	2604	4893	4893					0.031561672178895606
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.Y327*|1|0.36|ENSG00000104321|chr8:72059399-72059402|TAAA/-|frameshift_variant;TRPA1|p.N377Ifs*25|1|0.08|ENSG00000104321|chr8:72056981-72056982|-/AAACTAATTTTGTTTATTA|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2821960449219	2	509.282389	1016.55022	0.98896	0.00050366	-0.81904	-0.00041712	0.16993	8.6541E-05	509.28204642074763	21.417	0.21624	21.417	21.276	21.492	0					15	7	3	0	0	0	0.075264	1	5893	5893		100.82	40.888	1	504380			4794	2277	2585	2605	4894	4894					0.04261135235049096
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.Y327*|1|0.36|ENSG00000104321|chr8:72059399-72059402|TAAA/-|frameshift_variant;TRPA1|p.N377Ifs*25|1|0.08|ENSG00000104321|chr8:72056981-72056982|-/AAACTAATTTTGTTTATTA|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2821350097656	2	509.282389	1016.55022	0.9328	0.00047506	-1.0654	-0.00054257	-0.13257	-6.7515E-05	509.28181124417137	21.742	0.48067	21.742	21.564	22.045	0					21	11	4	0	0	0	3.4461E-06	1	6947	6947		201.61	80.743	1	4049500			4795	2277	2585	2605	4895	4895					0.04261135235049096
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.Y327*|1|0.36|ENSG00000104321|chr8:72059399-72059402|TAAA/-|frameshift_variant;TRPA1|p.N377Ifs*25|1|0.08|ENSG00000104321|chr8:72056981-72056982|-/AAACTAATTTTGTTTATTA|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.28216552734375	2	509.282389	1016.55022	-0.51081	-0.00026015	0.2908	0.0001481	-0.22001	-0.00011205	509.28247755986536	21.434	0.17047	21.434	21.35	21.52	0					14	5	3	0	0	0	0.0032625	1	6154	6154		171.33	50.462	1	498140			4796	2277	2585	2605	4896	4896					0.04261135235049096
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.Y327*|1|0.36|ENSG00000104321|chr8:72059399-72059402|TAAA/-|frameshift_variant;TRPA1|p.N377Ifs*25|1|0.08|ENSG00000104321|chr8:72056981-72056982|-/AAACTAATTTTGTTTATTA|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2823791503906	2	509.282389	1016.55022	1.1685	0.00059507	-0.97603	-0.00049707	0.19243	9.7999E-05	509.28186049984475	21.665	0.21753	21.665	21.558	21.776	0					13	4	4	0	0	0	3.1987E-10	1	7204	7204		219.72	81.653	1	2495300			4797	2277	2585	2605	4897	4897					0.04261135235049096
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.Y327*|1|0.36|ENSG00000104321|chr8:72059399-72059402|TAAA/-|frameshift_variant;TRPA1|p.N377Ifs*25|1|0.08|ENSG00000104321|chr8:72056981-72056982|-/AAACTAATTTTGTTTATTA|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2820129394531	2	509.282389	1016.55022	0.60414	0.00030768	-0.62356	-0.00031757	-0.019424	-9.8924E-06	509.2820340876601	21.508	0.2406	21.508	21.357	21.598	0					8	5	2	0	0	0	0.026439	1	6234	6234		120.63	41.179	1	223680			4798	2277	2585	2605	4898	4898					0.04261135235049096
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.Y327*|1|0.36|ENSG00000104321|chr8:72059399-72059402|TAAA/-|frameshift_variant;TRPA1|p.N377Ifs*25|1|0.08|ENSG00000104321|chr8:72056981-72056982|-/AAACTAATTTTGTTTATTA|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2824401855469	2	509.282389	1016.55022	0.19574	9.9687E-05	-0.12715	-6.4756E-05	0.06859	3.4931E-05	509.282307350119	21.491	0.19413	21.491	21.39	21.584	0					8	4	3	0	0	0	0.0088982	1	6250	6250		147.73	69.468	1	697410			4799	2277	2585	2605	4899	4899					0.04261135235049096
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.Y327*|1|0.36|ENSG00000104321|chr8:72059399-72059402|TAAA/-|frameshift_variant;TRPA1|p.N377Ifs*25|1|0.08|ENSG00000104321|chr8:72056981-72056982|-/AAACTAATTTTGTTTATTA|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2822570800781	2	509.282389	1016.55022	-0.046855	-2.3862E-05	-0.24985	-0.00012725	-0.29671	-0.00015111	509.2822125632473	21.638	0.46541	21.638	21.488	21.953	0					14	9	2	0	0	0	7.4654E-10	1	7065	7065		214.71	104.59	1	2902600			4800	2277	2585	2605	4900	4900					0.04261135235049096
ATQILSVPK	9	Unmodified	_ATQILSVPK_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7923583984375	2	478.792392	955.570232	-0.0319	-1.5274E-05	-0.57269	-0.0002742	-0.60459	-0.00028948	478.79216798581604	31.396	0.18883	31.396	31.369	31.558	0					13	8	2	0	0	0	0.063171	1	10094	10094		90.601	28.493	1	71225			4801	11500	2586	2606	4901	4901					0.09066930965661868
ATQILSVPK	9	Unmodified	_ATQILSVPK_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7919616699219	2	478.792392	955.570232	-0.2587	-0.00012386	0.10365	4.9629E-05	-0.15505	-7.4235E-05	478.7924339161181	31.693	0.29882	31.693	31.601	31.899	0					13	7	3	0	0	0	0.052435	1	11553	11553		94.409	24.782	1	406720			4802	11500	2586	2606	4902	4902					0.09066930965661868
ATQILSVPK	9	Unmodified	_ATQILSVPK_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7924499511719	2	478.792392	955.570232	-0.45367	-0.00021721	0.35581	0.00017036	-0.097859	-4.6854E-05	478.7926113865719	31.646	0.25619	31.646	31.538	31.795	0					9	5	2	0	0	0	0.021015	1	11968	11968		120.31	29.936	1	172710			4803	11500	2586	2606	4903	4903					0.09066930965661868
ATQILSVPK	9	Unmodified	_ATQILSVPK_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.792236328125	2	478.792392	955.570232	-2.9279	-0.0014019	2.1978	0.0010523	-0.73014	-0.00034958	478.7935539762995	31.428	0.22243	31.428	31.332	31.555	0					7	5	2	0	0	0	0.10821	1	10825	10825		77.533	17.415	1	76075			4804	11500	2586	2606	4904	4904					0.09066930965661868
ATQIMGGRD	9	Unmodified	_ATQIMGGRD_					0	0	0			REV__ENSG00000143851|ENST00000691036|PTPN7	REV__ENSG00000143851|ENST00000691036|PTPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7337341308594	2	474.732009	947.449465	2.3436	0.0011126	1.0461	0.00049662	3.3897	0.0016092	474.7325827121378	37.145	0.50764	37.145	36.994	37.501	0					17	10	2	0	0	0	0.078509	1	14484	14484		85.161	5.7098	1	1415000	+		4805	15212	2587	2607	4905	4905					-0.026362200194512297
ATQKPLVSK	9	Unmodified	_ATQKPLVSK_					0	0	0		ENSG00000159166|ENST00000391967|LAD1;LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2978515625	2	486.297842	970.581131	-1.2402	-0.00060309	2.0451	0.00099452	0.80491	0.00039143	486.2986864055635	15.693	0.078476	15.693	15.646	15.725	0					6	3	2	0	0	0	0.14578	1	3619	3619		68.846	33.694	1	265750			4806	5300	2588	2608	4906	4906					0.09466333339958055
ATQKPLVSK	9	Unmodified	_ATQKPLVSK_					0	0	0		ENSG00000159166|ENST00000391967|LAD1;LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2975158691406	2	486.297842	970.581131	0.64328	0.00031282	-1.1642	-0.00056617	-0.52097	-0.00025335	486.2972675513725	15.922	0.2112	15.922	15.818	16.03	0					9	4	3	0	0	0	0.014413	1	4458	4458		131.62	67.409	1	2657900			4807	5300	2588	2608	4907	4907					0.09466333339958055
ATQKPLVSK	9	Unmodified	_ATQKPLVSK_					0	0	0		ENSG00000159166|ENST00000391967|LAD1;LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.29766845703125	2	486.297842	970.581131	2.5178	0.0012244	-3.1362	-0.0015251	-0.6184	-0.00030073	486.2965258255854	15.922	0.21618	15.922	15.815	16.031	0					7	4	2	0	0	0	0.25761	1	4316	4316		54.722	8.7501	1	1196400			4808	5300	2588	2608	4908	4908					0.09466333339958055
ATQKPLVSKK	10	Unmodified	_ATQKPLVSKK_					0	0	0		ENSG00000159166|ENST00000391967|LAD1;LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3455810546875	2	550.345323	1098.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.008	1	14.008	13.508	14.508	0								0	0	0	0.17743	1	3540	3540		66.962	10.528	1				4809	5300	2589	2609	4909	4909					0.1307026681113257
ATQKPLVSKK	10	Unmodified	_ATQKPLVSKK_					0	0	0		ENSG00000159166|ENST00000391967|LAD1;LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3458862304688	2	550.345323	1098.67609	1.8153	0.00099906	-0.85063	-0.00046814	0.96471	0.00053092	550.344867330025	13.953	0.11245	13.953	13.897	14.01	0					4	2	2	0	0	0	0.026898	1	3371	3371		120.31	40.817	1	247130			4810	5300	2589	2609	4910	4910					0.1307026681113257
ATQKVNLNQIP	11	Unmodified	_ATQKVNLNQIP_					0	0	0		ENSG00000123178|ENST00000361840|SPRYD7;nc|ENSG00000123178|Q5W111-2|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.23541259765625	3	409.234822	1224.68264	1.6206	0.00066321	-1.1679	-0.00047796	0.45269	0.00018526	409.2344161019994	29.887	0.16909	29.887	29.824	29.993	0					11	6	2	0	0	0	0.69983	1	9461	9461		27.644	5.0823	1	152370			4811	3306	2590	2610	4911	4911					0.07928159971856985
ATQKVNLNQIP	11	Unmodified	_ATQKVNLNQIP_					0	0	0		ENSG00000123178|ENST00000361840|SPRYD7;nc|ENSG00000123178|Q5W111-2|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	ENSG00000123178|ENST00000361840|SPRYD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.2348327636719	3	409.234822	1224.68264	0.052761	2.1592E-05	-0.32469	-0.00013288	-0.27193	-0.00011128	409.2346684868275	30.191	0.32512	30.191	30.059	30.384	0					17	7	4	0	0	0	0.52595	1	11251	11251		42.338	9.2987	1	471360			4812	3306	2590	2610	4912	4912					0.07928159971856985
ATQLLKLAH	9	Unmodified	_ATQLLKLAH_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.206298828125	3	332.206315	993.597115	0.52255	0.00017359	-1.4126	-0.00046929	-0.89009	-0.0002957	332.2061258779783	28.756	0.33802	28.756	28.591	28.929	0					21	8	4	0	0	0	0.30841	1	10190	10190		49.536	14.384	1	583450			4813	4819	2591	2611	4913	4913					0.1000603957684234
ATQLLKLAH	9	Unmodified	_ATQLLKLAH_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.8067626953125	2	497.805834	993.597115	-1.1292	-0.00056211	1.7663	0.00087927	0.63711	0.00031716	497.8066376162593	28.489	0.145	28.489	28.407	28.552	0					8	5	2	0	0	0	0.28897	1	9190	9190		35.618	6.4687	1	109980			4814	4819	2591	2611	4914	4914					0.1000603957684234
ATQLLKLAH	9	Unmodified	_ATQLLKLAH_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.8055419921875	2	497.805834	993.597115	0.18013	8.9668E-05	-1.3015	-0.00064787	-1.1213	-0.0005582	497.805313429825	28.526	0.093843	28.526	28.477	28.571	0					4	2	2	0	0	0	0.13726	1	9493	9493		64.207	28.589	1	63447			4815	4819	2591	2611	4915	4915					0.1000603957684234
ATQLLKLAH	9	Unmodified	_ATQLLKLAH_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.20623779296875	3	332.206315	993.597115	-1.9074	-0.00063366	1.8996	0.00063105	-0.0078502	-2.6079E-06	332.20679145870287	28.513	0.13213	28.513	28.467	28.599	0					7	3	3	0	0	0	0.1424	1	9487	9487		69.628	41.745	1	124990			4816	4819	2591	2611	4916	4916					0.1000603957684234
ATQLLKLAH	9	Unmodified	_ATQLLKLAH_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.2063293457031	3	332.206315	993.597115	3.0082	0.00099935	-3.4369	-0.0011418	-0.42867	-0.00014241	332.2053164070301	28.682	0.31732	28.682	28.526	28.843	0					17	6	4	0	0	0	0.46194	1	10433	10433		36.447	0.82846	1	1098600			4817	4819	2591	2611	4917	4917					0.1000603957684234
ATQLLKLAHK	10	Unmodified	_ATQLLKLAHK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.9044189453125	3	374.904636	1121.69208	0.79592	0.00029839	-0.94422	-0.00035399	-0.1483	-5.5599E-05	374.9042710954615	24.055	0.18138	24.055	24.006	24.188	0					7	4	2	0	0	0	0.46989	1	8062	8062		48.602	22.538	1	464310			4818	4819	2592	2612	4918	4918					0.13609973048028223
ATQLLKLAHK	10	Unmodified	_ATQLLKLAHK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	374.9044189453125	3	374.904636	1121.69208	-1.0701	-0.00040119	0.81251	0.00030461	-0.2576	-9.6575E-05	374.9049483627095	23.801	0.15851	23.801	23.701	23.86	0					10	5	3	0	0	0	0.67464	1	7209	7209		25.126	4.2888	1	135030			4819	4819	2592	2612	4919	4919					0.13609973048028223
ATQLLKLAHK	10	Unmodified	_ATQLLKLAHK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.9045715332031	3	374.904636	1121.69208	0.75885	0.00028449	-1.2572	-0.00047134	-0.49839	-0.00018685	374.9041068037138	24.003	0.6166	24.003	23.646	24.262	0					22	12	4	0	0	0	0.2602	1	8358	8358		72.096	28.445	1	1154500			4820	4819	2592	2612	4920	4920					0.13609973048028223
ATQLLKLAHK	10	Unmodified	_ATQLLKLAHK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000437848.1_1_1:46117146-46117242:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.9046325683594	3	374.904636	1121.69208	0.73437	0.00027532	-0.99354	-0.00037248	-0.25917	-9.7162E-05	374.90416297397024	23.972	0.46547	23.972	23.813	24.278	0					18	9	4	0	0	0	0.080628	1	8217	8217		99.013	44.291	1	975300			4821	4819	2592	2612	4921	4921					0.13609973048028223
ATQMVRMILK	10	Unmodified	_ATQMVRMILK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	397.5629577636719	3	397.563116	1189.66752	1.9291	0.00076693	-1.8623	-0.00074039	0.066754	2.6539E-05	397.5622503966314	33.229	0.19259	33.229	33.138	33.331	0					11	8	2	0	0	0	0.59277	1	10798	10798		35.152	10.026	1	43882			4822	4933	2593	2613	4922	4922					0.08027253578643467
ATQMVRMILK	10	Unmodified	_ATQMVRMILK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	595.8401489257812	2	595.841036	1189.66752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.235	1	33.235	32.735	33.735	0								0	0	0	0.12977	1	10790	10790		70.816	14.095	1				4823	4933	2593	2613	4923	4923					0.08027253578643467
ATQMVRMILK	10	Unmodified	_ATQMVRMILK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.56329345703125	3	397.563116	1189.66752	0.68801	0.00027353	-1.2767	-0.00050756	-0.58867	-0.00023403	397.56279524143645	33.478	0.29733	33.478	33.351	33.649	0					19	7	4	0	0	0	0.071575	1	12372	12372		102.06	54.834	1	482340			4824	4933	2593	2613	4924	4924					0.08027253578643467
ATQMVRMILK	10	Unmodified	_ATQMVRMILK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.84130859375	2	595.841036	1189.66752	0.14711	8.7654E-05	-0.36143	-0.00021535	-0.21432	-0.0001277	595.8409744511146	33.451	0.29148	33.451	33.368	33.659	0					20	7	4	0	0	0	0.0084686	1	12379	12379		128.6	66.911	1	673700			4825	4933	2593	2613	4925	4925					0.08027253578643467
ATQMVRMILK	10	Unmodified	_ATQMVRMILK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	595.841064453125	2	595.841036	1189.66752	0.2158	0.00012858	-0.34267	-0.00020417	-0.12687	-7.5592E-05	595.8408096292441	33.27	0.11676	33.27	33.224	33.341	0					8	4	2	0	0	0	0.42408	1	11153	11153		58.23	16.803	1	70923			4826	4933	2593	2613	4926	4926					0.08027253578643467
ATQMVRMILK	10	Unmodified	_ATQMVRMILK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.8409423828125	2	595.841036	1189.66752	0.085217	5.0776E-05	-0.27982	-0.00016673	-0.1946	-0.00011595	595.8412258878976	33.472	0.3549	33.472	33.326	33.681	0					18	8	4	0	0	0	0.18814	1	12783	12783		68.846	12.412	1	503240			4827	4933	2593	2613	4927	4927					0.08027253578643467
ATQNQLLFH	9	Unmodified	_ATQNQLLFH_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.2822875976562	2	536.282723	1070.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.537	1	34.537	34.037	35.037	0								0	0	0	0.27025	1	11653	11653		40.778	5.1599	1				4828	4303	2594	2614	4928	4928					0.01843974674761739
ATQNQLLFH	9	Unmodified	_ATQNQLLFH_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2830810546875	2	536.282723	1070.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.753	1	34.753	34.253	35.253	0								0	0	0	0.00051498	1	13420	13420		138.24	47.872	1				4829	4303	2594	2614	4929	4929					0.01843974674761739
ATQNSSQFMK	10	Unmodified	_ATQNSSQFMK_					0	0	0		ENST00000532915.1_1_11:62538888-62545815:+|nuORF;ENST00000524976.5_1_11:62538888-62549806:+|nuORF;ENSG00000162227|ENST00000294168|TAF6L	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.2689208984375	2	571.268955	1140.52336	0.089324	5.1028E-05	0.43682	0.00024954	0.52615	0.00030057	571.2692807334573	22.074	0.13643	22.074	22.04	22.176	0					8	4	3	0	0	0	0.39647	1	6450	6450		56.632	28.75	1	102310			4830	5447	2595	2615	4930	4930					-0.04128296647786556
ATQNSSQFMK	10	Unmodified	_ATQNSSQFMK_					0	0	0		ENST00000532915.1_1_11:62538888-62545815:+|nuORF;ENST00000524976.5_1_11:62538888-62549806:+|nuORF;ENSG00000162227|ENST00000294168|TAF6L	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.2694091796875	2	571.268955	1140.52336	-1.3864	-0.00079201	1.9836	0.0011331	0.59715	0.00034114	571.2701316113036	22.16	0.10297	22.16	22.099	22.202	0					4	2	2	0	0	0	0.39647	1	6559	6559		56.632	1.8559	1	92232			4831	5447	2595	2615	4931	4931					-0.04128296647786556
ATQPGQPPSAG	11	Unmodified	_ATQPGQPPSAG_					0	0	0			REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.74957275390625	2	505.748713	1009.48287	0.10611	5.3667E-05	-0.27246	-0.0001378	-0.16635	-8.413E-05	505.7484326157828	16.031	0.1363	16.031	15.97	16.106	0					9	4	3	0	0	0	0.33926	1	3706	3706		58.23	5.2932	1	148880	+		4832	19426	2596	2616	4932	4932					-0.02148894975903204
ATQPGQPPSAG	11	Unmodified	_ATQPGQPPSAG_					0	0	0			REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7485656738281	2	505.748713	1009.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.038	1	16.038	15.538	16.538	0								0	0	0	0.2814	1	3716	3716		54.722	3.5297	1		+		4833	19426	2596	2616	4933	4933					-0.02148894975903204
ATQPGQPPSAG	11	Unmodified	_ATQPGQPPSAG_					0	0	0			REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7489318847656	2	505.748713	1009.48287	1.2438	0.00062903	-1.1259	-0.00056942	0.11786	5.9609E-05	505.7481461291609	16.242	0.16825	16.242	16.131	16.3	0					11	3	4	0	0	0	0.063642	1	4445	4445		98.582	16.341	1	1309300	+		4834	19426	2596	2616	4934	4934					-0.02148894975903204
ATQPTLYKQ	9	Unmodified	_ATQPTLYKQ_					0	0	0			REV__ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant	REV__ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.52691650390625	3	350.525713	1048.55531	1.4654	0.00051365	0.0009321	3.2672E-07	1.4663	0.00051398	350.52628295519736	18.838	0.24715	18.838	18.8	19.047	0					14	5	4	0	0	0	0.16806	1	5725	5725		65.465	3.7741	1	1244300	+		4835	12167	2597	2617	4935	4935					0.03297439097673305
ATQQEFYAK	9	Unmodified	_ATQQEFYAK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;ENST00000538236.1_1_12:123344649-123345071:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2683715820312	2	543.266739	1084.51892	0.32102	0.0001744	1.7479	0.00094956	2.0689	0.001124	543.2677924644737	23.671	0.15067	23.671	23.593	23.743	0					9	5	2	0	0	0	0.25761	1	7139	7139		54.722	19.57	1	92434			4836	3672	2598	2618	4936	4936					-0.019954377990416106
ATQQEFYAK	9	Unmodified	_ATQQEFYAK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;ENST00000538236.1_1_12:123344649-123345071:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2673950195312	2	543.266739	1084.51892	2.0169	0.0010957	-0.3414	-0.00018547	1.6755	0.00091023	543.2661698518077	23.855	0.31696	23.855	23.695	24.012	0					12	6	3	0	0	0	0.011893	1	8289	8289		136.99	30.306	1	843750			4837	3672	2598	2618	4937	4937					-0.019954377990416106
ATQQEFYAK	9	Unmodified	_ATQQEFYAK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;ENST00000538236.1_1_12:123344649-123345071:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.2673950195312	2	543.266739	1084.51892	-1.4896	-0.00080922	3.0301	0.0016461	1.5405	0.00083692	543.2682330397314	23.71	0.16668	23.71	23.627	23.794	0					8	4	2	0	0	0	0.13907	1	7287	7287		70.399	17.31	1	153630			4838	3672	2598	2618	4938	4938					-0.019954377990416106
ATQQELRAK	9	Unmodified	_ATQQELRAK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2948608398438	2	522.793455	1043.57236	0.79282	0.00041448	-0.96491	-0.00050445	-0.17209	-8.997E-05	522.792939517803	15.02	0.094203	15.02	14.976	15.07	0					6	4	2	0	0	0	0.061298	1	3190	3190		91.265	33.035	1	125910			4839	3852	2599	2619	4939	4939					0.05231359703475391
ATQQELRAK	9	Unmodified	_ATQQELRAK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7933959960938	2	522.793455	1043.57236	0.34879	0.00018235	-0.49885	-0.0002608	-0.15006	-7.845E-05	522.7933670503502	15.069	0.088525	15.069	15.009	15.097	0					10	4	3	0	0	0	0.13726	1	3363	3363		70.816	10.698	1	163800			4840	3852	2599	2619	4940	4940					0.05231359703475391
ATQQELRAK	9	Unmodified	_ATQQELRAK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.8645935058594	3	348.864729	1043.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.316	1	15.316	14.816	15.816	0								0	0	0	0.063706	1	4163	4163		88.177	26.412	1				4841	3852	2599	2619	4941	4941					0.05231359703475391
ATQQELRAK	9	Unmodified	_ATQQELRAK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.793701171875	2	522.793455	1043.57236	-0.033027	-1.7266E-05	3.1202	0.0016312	3.0872	0.001614	522.7937794634868	15.285	0.15783	15.285	15.212	15.37	0					10	3	4	0	0	0	0.0063888	1	4148	4148		152.06	41.941	1	521960			4842	3852	2599	2619	4942	4942					0.05231359703475391
ATQQLGLQ	8	Unmodified	_ATQQLGLQ_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7378234863281	2	429.737617	857.460681	-0.28738	-0.0001235	0.27497	0.00011817	-0.012406	-5.3315E-06	429.7377253360915	14.943	0.27763	14.943	14.776	15.054	0					24	13	2	0	0	0	0.5676	1	3219	3219		53.351	3.9099	1	165240			4843	11686	2600	2620	4943	4943					0.026249253463333844
ATQQPVTADK	10	Unmodified	_ATQQPVTADK_					0	0	0		nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;ENST00000345541.6_1_10:28900683-28903615:+|nuORF	nc|ENSG00000095787|Q9BTA9-5|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.764892578125	2	529.77747	1057.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.351	1	16.351	15.851	16.851	0								0	0	0	0.13763	1	4656	4656		72.243	12.125	1				4844	1908	2601	2621	4944	4944					0.01391947229649304
ATQQRRAQ	8	Unmodified	_ATQQRRAQ_					0	0	0		ENST00000480594.1_1_2:65245327-65245780:+|nuORF	ENST00000480594.1_1_2:65245327-65245780:+|nuORF	ENST00000480594.1_1_2:65245327-65245780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7632141113281	2	479.762489	957.510425	3.4582	0.0016591	-1.316	-0.00063135	2.1422	0.0010278	479.76181448851673	19.328	0.14816	19.328	19.221	19.369	0					7	4	2	0	0	0	0.46905	1	5208	5208		63.306	6.5852	1	206840			4845	9953	2602	2622	4945	4945					0.02997053075000622
ATQRQIVFR	9	Unmodified	_ATQRQIVFR_					0	0	0		sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1;sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.5520935058594	3	373.552485	1117.63563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.874	1	14.874	14.374	15.374	0								0	0	0	0.36609	1	3296	3296		20.947	2.4159	1				4846	22479	2603	2623	4946	4946					0.08151345211376793
ATQRQIVFR	9	Unmodified	_ATQRQIVFR_					0	0	0		sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1;sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.5522766113281	3	373.552485	1117.63563	0.83069	0.00031031	-1.046	-0.00039072	-0.21527	-8.0413E-05	373.5520392665593	15.087	0.31223	15.087	14.977	15.289	0					10	6	2	0	0	0	0.56424	1	4069	4069		25.574	2.0514	1	782510			4847	22479	2603	2623	4947	4947					0.08151345211376793
ATQSFSTFR	9	Unmodified	_ATQSFSTFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7589721679688	2	522.759081	1043.50361	1.5219	0.00079557	-0.79134	-0.00041368	0.73054	0.00038189	522.758608052066	29.462	0.26458	29.462	29.388	29.653	0					17	8	3	0	0	0	0.073657	1	9293	9293		86.882	40.909	1	465820			4848	1208	2604	2624	4948	4948					-0.01640304596230635
ATQSFSTFR	9	Unmodified	_ATQSFSTFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7596435546875	2	522.759081	1043.50361	1.6483	0.00086166	-1.0327	-0.00053986	0.61558	0.0003218	522.7585147699987	29.737	0.40828	29.737	29.614	30.022	0					19	10	2	0	0	0	0.001056	1	10644	10644		182.39	94.637	1	2569200			4849	1208	2604	2624	4949	4949					-0.01640304596230635
ATQSFSTFR	9	Unmodified	_ATQSFSTFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7593994140625	2	522.759081	1043.50361	0.44403	0.00023212	0.22483	0.00011753	0.66886	0.00034965	522.7591988002313	29.488	0.2767	29.488	29.377	29.653	0					26	10	3	0	0	0	0.18505	1	9587	9587		63.426	17.454	1	673010			4850	1208	2604	2624	4950	4950					-0.01640304596230635
ATQSFSTFR	9	Unmodified	_ATQSFSTFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7589721679688	2	522.759081	1043.50361	1.0876	0.00056853	-0.08689	-4.5423E-05	1.0007	0.0005231	522.7589723879324	29.505	0.25063	29.505	29.415	29.666	0					11	6	2	0	0	0	0.026848	1	9926	9926		112.11	45.678	1	459960			4851	1208	2604	2624	4951	4951					-0.01640304596230635
ATQSPISKK	9	Unmodified	_ATQSPISKK_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF;ENST00000574934.5_1_17:4442712-4445225:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2794189453125	2	480.279649	958.544745	-0.18241	-8.761E-05	-0.38254	-0.00018373	-0.56496	-0.00027134	480.27946270505186	14.859	0.25943	14.859	14.721	14.98	0					15	6	3	0	0	0	0.076532	1	3719	3719		85.862	29.141	1	917530			4852	3781	2605	2625	4952	4952					0.06381456443239131
ATQSPISKK	9	Unmodified	_ATQSPISKK_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF;ENST00000574934.5_1_17:4442712-4445225:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27947998046875	2	480.279649	958.544745	-0.50315	-0.00024165	-0.099824	-4.7943E-05	-0.60297	-0.0002896	480.2796509737104	14.823	0.36491	14.823	14.663	15.028	0					16	7	4	0	0	0	0.012936	1	3939	3939		134.77	38.95	1	579910			4853	3781	2605	2625	4953	4953					0.06381456443239131
ATQTPVSNK	9	Unmodified	_ATQTPVSNK_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2534484863281	2	473.253631	944.49271	-0.52426	-0.00024811	0.33508	0.00015858	-0.18918	-8.9531E-05	473.2536169227569	15.241	0.26814	15.241	15.101	15.369	0					18	6	4	0	0	0	0.035062	1	3902	3902		104.06	26.739	1	401860			4854	4196	2606	2626	4954	4954					0.01824293029483215
ATQTPVSNKK	10	Unmodified	_ATQTPVSNKK_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3016967773438	2	537.301113	1072.58767	3.3388	0.001794	-2.8352	-0.0015234	0.50364	0.00027061	537.2995110540976	13.32	0.2036	13.32	13.176	13.38	0					7	4	2	0	0	0	0.4287	1	3077	3077		53.089	5.4316	1	345960			4855	4196	2607	2627	4955	4955					0.054282265006804664
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.8802490234375	3	402.880379	1205.61931	0.95258	0.00038378	-0.97475	-0.00039271	-0.022168	-8.9311E-06	402.87999227165693	29.009	0.36873	29.009	28.888	29.256	0					20	9	3	0	0	0	0.42408	1	10308	10308		53.597	9.9461	1	756090			4856	5578;5577	2608	2628	4956	4956					0.024722192546050792
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	603.8173828125	2	603.81693	1205.61931	-0.39124	-0.00023624	0.68954	0.00041635	0.29829	0.00018011	603.8173828168212	29	0.25582	29	28.874	29.129	0					12	6	3	0	0	0	0.34614	1	10321	10321		50.034	5.6563	1	205830			4857	5578;5577	2608	2628	4957	4957					0.024722192546050792
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	603.817626953125	2	603.81693	1205.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.746	1	28.746	28.246	29.246	0								0	0	0	0.38024	1	9298	9298		31.634	17.497	1				4858	5578;5577	2608	2628	4958	4958					0.024722192546050792
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	603.8171997070312	2	603.81693	1205.61931	0.36587	0.00022092	-0.056216	-3.3944E-05	0.30966	0.00018698	603.816929495187	28.997	0.25208	28.997	28.894	29.146	0					12	5	3	0	0	0	0.010251	1	10679	10679		131.12	54.342	1	312140			4859	5578;5577	2608	2628	4959	4959					0.024722192546050792
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.8802490234375	3	402.880379	1205.61931	-0.59143	-0.00023828	0.66036	0.00026605	0.06893	2.777E-05	402.8806931521193	28.959	0.51434	28.959	28.809	29.324	0					23	10	4	0	0	0	0.18316	1	10546	10546		81.525	29.997	1	328970			4860	5578;5577	2608	2628	4960	4960					0.024722192546050792
ATQTRTVNK	9	Unmodified	_ATQTRTVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.78594970703125	2	509.78563	1017.55671	-0.013864	-7.0676E-06	0.4171	0.00021263	0.40324	0.00020557	509.7858917938995	12.147	0.13596	12.147	12.079	12.215	0					14	4	5	0	0	0	0.02429	1	2498	2498		114.89	37.577	1	3080100			4861	6476	2609	2629	4961	4961					0.04863073186413658
ATQTRTVNK	9	Unmodified	_ATQTRTVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.78619384765625	2	509.78563	1017.55671	-0.48216	-0.0002458	1.3892	0.00070819	0.90703	0.00046239	509.786485861032	11.916	0.040461	11.916	11.879	11.919	0					4	2	2	0	0	0	0.12834	1	2328	2328		72.879	17.375	1	113590			4862	6476	2609	2629	4962	4962					0.04863073186413658
ATQTSVVVK	9	Unmodified	_ATQTSVVVK_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7744445800781	2	466.7742	931.533846	0.81944	0.00038249	-0.72845	-0.00034002	0.09099	4.2472E-05	466.77392725898096	19.756	0.11024	19.756	19.682	19.792	0					8	3	3	0	0	0	0.0059092	1	5162	5162		154.12	20.306	1	203340			4863	5274	2610	2630	4963	4963					0.06534054068958994
ATQTSVVVK	9	Unmodified	_ATQTSVVVK_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.77374267578125	2	466.7742	931.533846	0.26178	0.00012219	-0.53347	-0.00024901	-0.27169	-0.00012682	466.7739184033699	20.087	0.23768	20.087	19.988	20.226	0					11	5	3	0	0	0	0.019258	1	6163	6163		123.21	27.018	1	1528900			4864	5274	2610	2630	4964	4964					0.06534054068958994
ATQTSVVVK	9	Unmodified	_ATQTSVVVK_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.77386474609375	2	466.7742	931.533846	-0.13332	-6.2229E-05	-0.71529	-0.00033388	-0.84861	-0.00039611	466.773835936522	19.987	0.21934	19.987	19.877	20.096	0					13	4	4	0	0	0	3.4569E-05	1	6393	6393		199.7	73.89	1	2595500			4865	5274	2610	2630	4965	4965					0.06534054068958994
ATQTSVVVK	9	Unmodified	_ATQTSVVVK_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7744445800781	2	466.7742	931.533846	-0.18558	-8.6625E-05	1.0197	0.00047596	0.83409	0.00038933	466.7745946973314	19.802	0.14423	19.802	19.716	19.86	0					5	3	2	0	0	0	0.02953	1	5458	5458		109.48	13.288	1	155840			4866	5274	2610	2630	4966	4966					0.06534054068958994
ATQTSVVVK	9	Unmodified	_ATQTSVVVK_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.77398681640625	2	466.7742	931.533846	-0.50279	-0.00023469	-0.055929	-2.6106E-05	-0.55871	-0.00026079	466.77413951482487	19.953	0.26571	19.953	19.893	20.159	0					15	5	4	0	0	0	0.0076184	1	6268	6268		146.79	38.698	1	1203200			4867	5274	2610	2630	4967	4967					0.06534054068958994
ATQTVFIFK	9	Unmodified	_ATQTVFIFK_					0	0	0		ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.8003540039062	2	527.800217	1053.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.78	1	41.78	41.28	42.28	0								0	0	0	0.33329	1	15866	15866		28.081	10.613	1				4868	10889	2611	2631	4968	4968					0.06123217482695509
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2953186035156	2	500.295299	998.576045	-0.04816	-2.4094E-05	-0.24552	-0.00012283	-0.29368	-0.00014693	500.2951666839638	26.894	0.29878	26.894	26.68	26.979	0					19	10	2	0	0	0	0.062358	1	8186	8186		105.17	34.349	1	230010			4869	2871	2612	2632	4969	4969					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2950134277344	2	500.295299	998.576045	-0.15651	-7.8302E-05	0.50473	0.00025251	0.34821	0.00017421	500.29540528476264	27.123	0.54399	27.123	26.875	27.419	0					37	13	4	0	0	0	0.046394	1	9393	9393		110.54	34.371	1	1277400			4870	2871	2612	2632	4970	4970					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2950439453125	2	500.295299	998.576045	-1.0071	-0.00050383	0.35543	0.00017782	-0.65164	-0.00032601	500.29650959220675	26.865	0.44935	26.865	26.658	27.108	0					36	16	3	0	0	0	0.45669	1	8453	8453		50.034	0.49747	1	202540			4871	2871	2612	2632	4971	4971					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.29443359375	2	500.295299	998.576045	-1.1161	-0.00055839	0.36637	0.00018329	-0.74975	-0.0003751	500.2959567926706	26.842	0.20643	26.842	26.756	26.963	0					12	7	2	0	0	0	0.28855	1	8469	8469		68.626	13.903	1	47818			4872	2871	2612	2632	4972	4972					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2951965332031	2	500.295299	998.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.09	1	27.09	26.59	27.59	0								0	0	0	0.013629	1	9775	9775		110.54	32.277	1				4873	2871	2612	2632	4973	4973					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2947082519531	2	500.295299	998.576045	-0.61561	-0.00030799	0.6444	0.00032239	0.028794	1.4405E-05	500.2955656154751	27.119	0.35851	27.119	26.895	27.254	0					16	7	3	0	0	0	0.25899	1	9743	9743		72.243	27.866	1	334930			4874	2871	2612	2632	4974	4974					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2955627441406	2	500.295299	998.576045	-2.1384	-0.0010698	2.3351	0.0011682	0.19666	9.8387E-05	500.2964008209519	26.933	0.33156	26.933	26.721	27.052	0					18	8	3	0	0	0	0.068922	1	8719	8719		102.95	26.785	1	313530			4875	2871	2612	2632	4975	4975					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2952880859375	2	500.295299	998.576045	2.921	0.0014613	-1.7792	-0.00089012	1.1418	0.00057122	500.29432522869917	27.079	0.6693	27.079	26.772	27.441	0					37	13	4	0	0	0	0.075264	1	9614	9614		100.82	22.555	1	1766500			4876	2871	2612	2632	4976	4976					0.07670029477333173
ATQVSWNRDLS	11	Unmodified	_ATQVSWNRDLS_					0	0	0			REV__LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant	REV__LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.21527099609375	3	426.214198	1275.62076	1.1725	0.00049975	1.3842	0.00058995	2.5567	0.0010897	426.2147972436932	18.805	0.12261	18.805	18.733	18.856	0					5	3	2	0	0	0	0.70921	1	4753	4753		26.75	2.5179	1	76497	+		4877	14939	2613	2633	4977	4977					-0.006021914472739809
ATQVVVEKK	9	Unmodified	_ATQVVVEKK_					0	0	0		VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.3034973144531	2	501.303124	1000.5917	-0.044883	-2.25E-05	-0.39579	-0.00019841	-0.44067	-0.00022091	501.3029803791199	15.808	0.12766	15.808	15.751	15.879	0					12	5	3	0	0	0	0.047855	1	3496	3496		96.034	13.283	1	298050			4878	7698	2614	2634	4978	4978					0.09142315994381534
ATQVVVEKK	9	Unmodified	_ATQVVVEKK_					0	0	0		VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3028564453125	2	501.303124	1000.5917	-0.11105	-5.5671E-05	-0.37678	-0.00018888	-0.48783	-0.00024455	501.3029828205325	16.143	0.22568	16.143	16.049	16.275	0					12	5	3	0	0	0	0.0015666	1	4322	4322		177.3	56.436	1	2229900			4879	7698	2614	2634	4979	4979					0.09142315994381534
ATQVVVEKK	9	Unmodified	_ATQVVVEKK_					0	0	0		VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3032531738281	2	501.303124	1000.5917	2.9233	0.0014655	-2.8892	-0.0014484	0.034084	1.7087E-05	501.30180432286795	16.072	0.27014	16.072	15.964	16.234	0					10	5	3	0	0	0	0.0076184	1	4385	4385		146.79	53.642	1	1564300			4880	7698	2614	2634	4980	4980					0.09142315994381534
ATRAPHPK	8	Unmodified	_ATRAPHPK_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.2586364746094	2	439.253769	876.492984	-3.071	-0.001349	0.96673	0.00042464	-2.1043	-0.00092432	439.25412339692565	23.341	0.65582	23.341	23.188	23.844	0					45	15	5	0	0	0	0.79176	1	7218	7218		21.702	2.3424	1	1887000	+		4881	14527	2615	2635	4981	4981					0.049797575399907146
ATREQPVW	8	Unmodified	_ATREQPVW_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.5077819824219	3	329.506653	985.498129	3.0036	0.0009897	-0.043883	-1.446E-05	2.9597	0.00097524	329.50680913136404	17.167	0.16918	17.167	17.107	17.276	0					7	3	3	0	0	0	0.72381	1	4916	4916		30.504	0.18592	1	693980	+		4882	14574	2616	2636	4982	4982					0.004800166119480309
ATRGKGDKER	10	Unmodified	_ATRGKGDKER_					0	0	0			REV__ENSG00000105255|ENST00000221856|FSD1	REV__ENSG00000105255|ENST00000221856|FSD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20989990234375	3	373.207266	1116.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.983	1	47.983	47.483	48.483	0								0	0	0	0.4044	1	19099	19099		29.17	3.1067	1		+		4883	13763	2617	2637	4983	4983					0.04633262963693596
ATRIGCQQLK	10	Unmodified	_ATRIGCQQLK_					0	0	0		ENST00000492977.5_1_1:202119404-202127449:-|nuORF;ENSG00000143851|ENST00000691036|PTPN7;nc|ENSG00000143851|P35236-2|PTPN7;nc|ENSG00000143851|P35236-3|PTPN7	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.544677734375	3	373.209731	1116.60736	0.84729	0.00031622	-0.31855	-0.00011889	0.52875	0.00019733	373.20970788303765	45.869	0.57747	45.869	45.449	46.026	0					45	32	2	0	0	0	0.64162	1	17739	17739		29.17	0	1	99626			4884	4586	2618	2638	4984	4984					0.053722792397593366
ATRLWLRNG	9	Unmodified	_ATRLWLRNG_					0	0	0		nc|ENSG00000185033|Q9NPR2-2|SEMA4B;SEMA4B|p.S797Vfs*6|1|0.32|ENSG00000185033|chr15:90228507-90228508|-/C|frameshift_variant;ENSG00000185033|ENST00000411539|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.87664794921875	3	362.87708	1085.60941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.328	1	16.328	15.828	16.828	0								0	0	0	0.3119	1	3848	3848		32.812	1.2826	1				4885	7057	2619	2639	4985	4985					0.07003076039904954
ATRSKSNLK	9	Unmodified	_ATRSKSNLK_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.53302001953125	3	335.533091	1003.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.832	1	21.832	21.332	22.332	0								0	0	0	0.31838	1	6075	6075		31.53	5.9558	1				4886	1397	2620	2640	4986	4986					0.07579663566104955
ATRSLAWV	8	Unmodified	_ATRSLAWV_					0	0	0		sp|P09718|US15_HCMVAUncharacterizedproteinHVLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US15PE=3SV=2;sp|F5HFH0|US15_HCMVMMembraneproteinUS15OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US15PE=3SV=1	sp|P09718|US15_HCMVAUncharacterizedproteinHVLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US15PE=3SV=2	sp|P09718|US15_HCMVAUncharacterizedproteinHVLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US15PE=3SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2630310058594	2	452.255977	902.497401	-1.1953	-0.00054058	3.2438	0.001467	2.0485	0.00092644	452.2563975787822	26.257	0.35668	26.257	26.086	26.443	0					24	11	3	0	0	0	0.72381	1	8210	8210		30.504	0	1	103260			4887	22452	2621	2641	4987	4987					0.04225221962906289
ATRSLEIVL	9	Unmodified	_ATRSLEIVL_					0	0	0		ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	ENSG00000188162|ENST00000399397|OTOG	ENSG00000188162|ENST00000399397|OTOG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.53778076171875	3	334.537842	1000.5917	0.65394	0.00021877	-0.92389	-0.00030908	-0.26995	-9.0308E-05	334.5375477826056	16.154	0.22244	16.154	16.064	16.286	0					9	5	3	0	0	0	0.60749	1	4333	4333		28.081	6.3957	1	335150			4888	7240	2622	2642	4988	4988					0.09142315994370165
ATRSSLLLF	9	Unmodified	_ATRSSLLLF_					0	0	0			REV__nc|ENSG00000178031|Q8N6G6-2|ADAMTSL1	REV__nc|ENSG00000178031|Q8N6G6-2|ADAMTSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5340576171875	3	336.53432	1006.58113	-0.67476	-0.00022708	-0.27698	-9.3212E-05	-0.95174	-0.00032029	336.53447183699865	27.682	0.92159	27.682	27.131	28.052	0					49	32	3	0	0	0	0.61124	1	8622	8622		19.104	1.6355	1	88735	+		4889	12077	2623	2643	4989	4989					0.07810333339966746
ATRSVAVVSQ	10	Unmodified	_ATRSVAVVSQ_					0	0	0			REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.52618408203125	3	339.861096	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.048	1	15.048	14.548	15.548	0								0	0	0	0.3963	1	3201	3201		31.634	1.3165	1		+		4890	12109	2624	2644	4990	4990					0.05383957329195255
ATRTLISSR	9	Unmodified	_ATRTLISSR_					0	0	0			REV__ENST00000263212.9_2_22:22274709-22275219:-|nuORF	REV__ENST00000263212.9_2_22:22274709-22275219:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.5330810546875	3	335.533091	1003.57744	-0.66869	-0.00022437	0.31506	0.00010571	-0.35363	-0.00011866	335.5331548230182	21.845	0.11485	21.845	21.746	21.86	0					5	3	2	0	0	0	0.44593	1	6339	6339		37.812	16.865	1	102640	+		4891	18041	2625	2645	4991	4991					0.07579663566104955
ATRTPGPAR	9	Unmodified	_ATRTPGPAR_					0	0	0		RHBDF2|p.A471Pfs*208|1|0.15|ENSG00000129667|chr17:76474513-76474513|C/-|frameshift_variant	RHBDF2|p.A471Pfs*208|1|0.15|ENSG00000129667|chr17:76474513-76474513|C/-|frameshift_variant	RHBDF2|p.A471Pfs*208|1|0.15|ENSG00000129667|chr17:76474513-76474513|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.76214599609375	2	463.761958	925.509363	0.068509	3.1772E-05	0.35585	0.00016503	0.42435	0.0001968	463.7621382238056	14.098	0.225	14.098	13.987	14.212	0					11	5	3	0	0	0	0.24095	1	3342	3342		56.721	5.3856	1	211240			4892	22342	2626	2646	4992	4992					0.04362838706083494
ATRTRLRRG	9	Unmodified	_ATRTRLRRG_					0	0	0		ENST00000536642.5_1_11:64008530-64011025:+|nuORF	ENST00000536642.5_1_11:64008530-64011025:+|nuORF	ENST00000536642.5_1_11:64008530-64011025:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.89434814453125	3	362.891612	1085.65301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.771	1	19.771	19.271	20.271	0								0	0	0	0.28666	1	6170	6170		37.812	0	1				4893	10489	2627	2647	4993	4993					0.11360685537010795
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2535400390625	2	491.253631	980.49271	-0.063546	-3.1217E-05	-0.30964	-0.00015211	-0.37318	-0.00018333	491.2534322955602	18.652	0.26277	18.652	18.563	18.826	0					21	8	4	0	0	0	5.4275E-05	1	4664	4664		195.05	81.634	1	1697600			4894	4346	2628	2648	4994	4994					0.0016829302948053737
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.253662109375	2	491.253631	980.49271	-0.52383	-0.00025733	0.31056	0.00015256	-0.21327	-0.00010477	491.2537733186445	18.961	0.37268	18.961	18.889	19.262	0					25	9	4	0	0	0	3.4569E-05	1	5623	5623		199.7	77.528	1	8504200			4895	4346	2628	2648	4995	4995					0.0016829302948053737
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2532043457031	2	491.253631	980.49271	-1.26	-0.00061896	0.77583	0.00038113	-0.48413	-0.00023783	491.2539426154369	18.628	0.21194	18.628	18.559	18.771	0					16	7	3	0	0	0	0.00065248	1	4905	4905		186.41	82.354	1	826680			4896	4346	2628	2648	4996	4996					0.0016829302948053737
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2532043457031	2	491.253631	980.49271	-1.3445	-0.0006605	0.95672	0.00046999	-0.3878	-0.00019051	491.2542160244995	18.65	0.15164	18.65	18.582	18.734	0					9	5	2	0	0	0	0.10506	1	4903	4903		78.264	25.327	1	203980			4897	4346	2628	2648	4997	4997					0.0016829302948053737
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.25390625	2	491.253631	980.49271	0.58545	0.0002876	-0.48716	-0.00023932	0.098285	4.8283E-05	491.2533965540623	18.875	0.24155	18.875	18.792	19.034	0					15	5	4	0	0	0	3.3778E-05	1	5880	5880		199.89	72.43	1	4334700			4898	4346	2628	2648	4998	4998					0.0016829302948053737
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2529602050781	2	491.253631	980.49271	-0.7304	-0.00035881	0.049439	2.4287E-05	-0.68097	-0.00033453	491.25360998848583	18.904	0.15995	18.904	18.807	18.967	0					8	3	3	0	0	0	0.0037134	1	5872	5872		164.46	65.826	1	1044700			4899	4346	2628	2648	4999	4999					0.0016829302948053737
ATSAPEETK	9	Unmodified	_ATSAPEETK_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2295837402344	2	467.229822	932.445091	0.65095	0.00030415	-1.0594	-0.000495	-0.40847	-0.00019085	467.2293078082019	14.455	0.28422	14.455	14.362	14.646	0					13	6	3	0	0	0	0.014688	1	3761	3761		131.03	51.58	1	997990			4900	1107	2629	2649	5000	5000					-0.02383405961381868
ATSAPEETK	9	Unmodified	_ATSAPEETK_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2295837402344	2	467.229822	932.445091	0.62027	0.00028981	-1.0798	-0.0005045	-0.4595	-0.00021469	467.2293597599604	14.449	0.21627	14.449	14.341	14.558	0					10	4	3	0	0	0	0.16806	1	3610	3610		65.465	7.6541	1	580550			4901	1107	2629	2649	5001	5001					-0.02383405961381868
ATSAPGNAR	9	Unmodified	_ATSAPGNAR_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.71759033203125	2	422.717216	843.419879	0.3708	0.00015674	0.12729	5.3808E-05	0.49809	0.00021055	422.71733754287783	13.223	0.13039	13.223	13.162	13.292	0					6	3	2	0	0	0	0.42902	1	2964	2964		39.253	8.7492	1	53982			4902	801	2630	2650	5002	5002					-0.008094159732877415
ATSAPGNAR	9	Unmodified	_ATSAPGNAR_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.7170715332031	2	422.717216	843.419879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.99	1	12.99	12.49	13.49	0								0	0	0	0.13137	1	2628	2628		64.207	8.7031	1				4903	801	2630	2650	5003	5003					-0.008094159732877415
ATSAPGNAR	9	Unmodified	_ATSAPGNAR_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7170715332031	2	422.717216	843.419879	-0.21334	-9.0182E-05	-0.46698	-0.0001974	-0.68031	-0.00028758	422.7170290182029	13.259	0.69822	13.259	13.159	13.857	0					32	15	4	0	0	0	0.048471	1	3172	3172		95.815	10.456	1	6025100			4904	801	2630	2650	5004	5004					-0.008094159732877415
ATSAPLVSR	9	Unmodified	_ATSAPLVSR_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;CELSR1|p.T1849Rfs*8|2|0.25|ENSG00000075275|chr22:46397831-46397831|C/-|frameshift_variant;CELSR1|p.R2275Qfs*18|1|0.18|ENSG00000075275|chr22:46384603-46384604|-/G|frameshift_variant;CELSR1|p.I2650Sfs*5|1|0.42|ENSG00000075275|chr22:46369187-46369187|T/-|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000497509.1_1_22:46926386-46930076:-|nuORF;CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR2-KIAA1324|1|fusion;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2575988769531	2	451.258717	900.50288	0.00021736	9.8085E-08	-3.6278	-0.0016371	-3.6275	-0.001637	451.25708619632167	22.176	0.19368	22.176	22.097	22.29	0					13	6	3	0	0	0	0.21419	1	6219	6219		59.931	10.395	1	186350			4905	469;467	2631	2651	5005	5005					0.048649007547169276
ATSAPLVSR	9	Unmodified	_ATSAPLVSR_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;CELSR1|p.T1849Rfs*8|2|0.25|ENSG00000075275|chr22:46397831-46397831|C/-|frameshift_variant;CELSR1|p.R2275Qfs*18|1|0.18|ENSG00000075275|chr22:46384603-46384604|-/G|frameshift_variant;CELSR1|p.I2650Sfs*5|1|0.42|ENSG00000075275|chr22:46369187-46369187|T/-|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000497509.1_1_22:46926386-46930076:-|nuORF;CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR2-KIAA1324|1|fusion;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2581481933594	2	451.258717	900.50288	0.70252	0.00031702	-2.5733	-0.0011612	-1.8708	-0.00084421	451.25749006950986	22.391	0.26516	22.391	22.302	22.567	0					11	5	3	0	0	0	0.15163	1	7572	7572		67.494	9.2637	1	833390			4906	469;467	2631	2651	5006	5006					0.048649007547169276
ATSAPLVSR	9	Unmodified	_ATSAPLVSR_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;CELSR1|p.T1849Rfs*8|2|0.25|ENSG00000075275|chr22:46397831-46397831|C/-|frameshift_variant;CELSR1|p.R2275Qfs*18|1|0.18|ENSG00000075275|chr22:46384603-46384604|-/G|frameshift_variant;CELSR1|p.I2650Sfs*5|1|0.42|ENSG00000075275|chr22:46369187-46369187|T/-|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000497509.1_1_22:46926386-46930076:-|nuORF;CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR2-KIAA1324|1|fusion;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2569580078125	2	451.258717	900.50288	-0.40643	-0.0001834	-4.2742	-0.0019288	-4.6806	-0.0021122	451.25682119600395	22.396	0.3665	22.396	22.239	22.605	0					21	7	4	0	0	0	0.22837	1	7429	7429		58.23	4.8785	1	1332400			4907	469;467	2631	2651	5007	5007					0.048649007547169276
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.255859375	2	453.256174	904.497795	-0.009777	-4.4315E-06	-0.61166	-0.00027724	-0.62143	-0.00028167	453.25581639387156	19.341	0.12187	19.341	19.256	19.378	0					5	3	2	0	0	0	0.026848	1	4980	4980		112.11	26.946	1	194460			4908	3320	2632	2652	5008	5008					0.04172596892112779
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2559509277344	2	453.256174	904.497795	0.69079	0.00031311	-1.5151	-0.00068673	-0.82431	-0.00037362	453.25548511695405	19.668	0.41495	19.668	19.522	19.937	0					18	9	4	0	0	0	0.020674	1	5985	5985		120.87	33.172	1	1432500			4909	3320	2632	2652	5009	5009					0.04172596892112779
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2558898925781	2	453.256174	904.497795	-0.12126	-5.4964E-05	-0.53111	-0.00024073	-0.65238	-0.00029569	453.2559315369962	19.535	0.16321	19.535	19.43	19.593	0					5	3	2	0	0	0	0.0059092	1	6201	6201		154.12	55.489	1	934890			4910	3320	2632	2652	5010	5010					0.04172596892112779
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2557678222656	2	453.256174	904.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.599	1	19.599	19.099	20.099	0								0	0	0	0.12601	1	6223	6223		65.465	19.493	1				4911	3320	2632	2652	5011	5011					0.04172596892112779
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.25592041015625	2	453.256174	904.497795	0.31374	0.00014221	-0.732	-0.00033179	-0.41826	-0.00018958	453.255845521995	19.377	0.14729	19.377	19.289	19.437	0					5	3	2	0	0	0	0.035062	1	5260	5260		104.06	21.306	1	251810			4912	3320	2632	2652	5012	5012					0.04172596892112779
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2559509277344	2	453.256174	904.497795	-0.0036007	-1.632E-06	-1.2509	-0.000567	-1.2545	-0.00056863	453.25569677676873	19.36	0.18682	19.36	19.318	19.505	0					6	4	2	0	0	0	0.0076184	1	5257	5257		146.79	48.156	1	114200			4913	3320	2632	2652	5013	5013					0.04172596892112779
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25592041015625	2	453.256174	904.497795	-0.41576	-0.00018844	-0.76751	-0.00034788	-1.1833	-0.00053632	453.25577296800867	19.549	0.3659	19.549	19.442	19.808	0					12	7	3	0	0	0	0.0059092	1	6055	6055		154.12	55.489	1	1474700			4914	3320	2632	2652	5014	5014					0.04172596892112779
ATSAVTVTR	9	Unmodified	_ATSAVTVTR_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25579833984375	2	453.256174	904.497795	0.8773	0.00039764	-2.2813	-0.001034	-1.404	-0.00063637	453.25523022720563	19.533	0.41705	19.533	19.425	19.842	0					15	8	4	0	0	0	0.0097668	1	6069	6069		141.52	39.92	1	1371800			4915	3320	2632	2652	5015	5015					0.04172596892112779
ATSAWGMLP	9	Unmodified	_ATSAWGMLP_					0	0	0			REV__ENST00000509443.1_1_5:52942143-52954486:+|nuORF	REV__ENST00000509443.1_1_5:52942143-52954486:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2293395996094	2	467.228571	932.442588	0.37309	0.00017432	1.705	0.00079661	2.0781	0.00097093	467.2292622931889	14.497	0.32964	14.497	14.417	14.747	0					13	8	3	0	0	0	0.13483	1	3538	3538		71.378	11.26	1	468700	+		4916	15975	2633	2653	5016	5016					-0.02633532900017599
ATSDKKKKTEA	11	Unmodified	_ATSDKKKKTEA_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.89501953125	3	402.894465	1205.66157	0.66366	0.00026739	-0.0042632	-1.7176E-06	0.6594	0.00026567	402.89463101436365	27.067	0.2956	27.067	26.819	27.114	0					10	7	2	0	0	0	0.73562	1	9348	9348		24.232	2.5461	1	79937			4917	1320	2634	2654	5017	5017					0.06696149872368551
ATSDKMQHFK	10	Unmodified	_ATSDKMQHFK_					0	0	0		ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant;nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.7930297851562	2	596.792598	1191.57064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.236	1	17.236	16.736	17.736	0								0	0	0	0.060762	1	4826	4826		88.177	5.9364	1				4918	3265	2635	2655	5018	5018					-0.017480173768035456
ATSDLAIIARK	11	Unmodified	_ATSDLAIIARK_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;ENST00000566329.1_1_16:72134993-72137705:+|nuORF	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.8458251953125	2	579.845687	1157.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.731	1	28.731	28.231	29.231	0								0	0	0	0.05357	1	10561	10561		85.862	9.6921	1				4919	785	2636	2656	5019	5019					0.10429061460172306
ATSDLLMGGK	10	Oxidation (M)	_ATSDLLM(Oxidation (M))GGK_		ATSDLLM(1)GGK		ATSDLLM(88)GGK	0	0	1			REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7551574707031	2	504.755149	1007.49575	1.041	0.00052543	-0.91379	-0.00046124	0.12716	6.4186E-05	504.7547342741659	25.048	1.1125	25.048	24.393	25.506	0					29	22	2	0	0	0	0.14426	1	8852	8852		87.696	24.163	1	2020500	+		4920	13271	2637	2657	5020	5020		512			-0.007701999080040878
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2180480957031	2	469.2184	936.422247	0.018256	8.5661E-06	-1.0569	-0.00049594	-1.0387	-0.00048737	469.2180300021226	22.377	0.3253	22.377	22.279	22.605	0					19	9	4	0	0	0	0.02953	1	6318	6318		109.48	24.563	1	505520			4921	2157	2638	2658	5021	5021					-0.04850748350486356
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2184753417969	2	469.2184	936.422247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.723	1	22.723	22.223	23.223	0								0	0	0	0.13425	1	7424	7424		63.534	14.092	1				4922	2157	2638	2658	5022	5022					-0.04850748350486356
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.21807861328125	2	469.2184	936.422247	0.23501	0.00011027	-1.2798	-0.00060049	-1.0448	-0.00049022	469.2179112586467	22.691	0.33728	22.691	22.604	22.941	0					26	8	5	0	0	0	0.0016668	1	7418	7418		176.44	59.541	1	4152400			4923	2157	2638	2658	5023	5023					-0.04850748350486356
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2180480957031	2	469.2184	936.422247	-0.1264	-5.931E-05	-0.91464	-0.00042917	-1.041	-0.00048848	469.2180907165001	22.619	0.41027	22.619	22.468	22.878	0					23	8	5	0	0	0	0.0067848	1	7671	7671		150.36	45.615	1	5359900			4924	2157	2638	2658	5024	5024					-0.04850748350486356
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.21856689453125	2	469.2184	936.422247	-0.21583	-0.00010127	-0.29604	-0.00013891	-0.51187	-0.00024018	469.218293581409	22.491	0.37714	22.491	22.39	22.767	0					18	8	4	0	0	0	0.01873	1	6697	6697		124.08	19.334	1	402180			4925	2157	2638	2658	5025	5025					-0.04850748350486356
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2178649902344	2	469.2184	936.422247	-0.66467	-0.00031188	0.18928	8.8812E-05	-0.4754	-0.00022307	469.21824004269655	22.479	0.1991	22.479	22.376	22.575	0					9	4	3	0	0	0	0.33044	1	6714	6714		47.657	5.1829	1	150640			4926	2157	2638	2658	5026	5026					-0.04850748350486356
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2181091308594	2	469.2184	936.422247	-0.52332	-0.00024555	-0.45774	-0.00021478	-0.98106	-0.00046033	469.218355890155	22.597	0.46689	22.597	22.489	22.956	0					23	9	4	0	0	0	0.011389	1	7549	7549		138.06	33.316	1	4463000			4927	2157	2638	2658	5027	5027					-0.04850748350486356
ATSDMDIGK	9	Unmodified	_ATSDMDIGK_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2181701660156	2	469.2184	936.422247	0.54785	0.00025706	-1.2101	-0.0005678	-0.66225	-0.00031074	469.2179659223475	22.628	0.21724	22.628	22.521	22.739	0					14	4	4	0	0	0	0.21263	1	7570	7570		60.118	12.461	1	867510			4928	2157	2638	2658	5028	5028					-0.04850748350486356
ATSDPKQLSK	10	Unmodified	_ATSDPKQLSK_					0	0	0		ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7933349609375	2	537.793121	1073.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.682	1	15.682	15.182	16.182	0								0	0	0	0.10801	1	4187	4187		78.264	21.83	1				4929	3439	2639	2659	5029	5029					0.03784520263752711
ATSEIFASK	9	Unmodified	_ATSEIFASK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.25042724609375	2	477.250557	952.486562	0.0087603	4.1809E-06	-0.035257	-1.6826E-05	-0.026496	-1.2645E-05	477.25038082060064	26.451	0.21145	26.451	26.387	26.599	0					19	7	3	0	0	0	0.095583	1	8049	8049		80.455	31.013	1	209130			4930	964	2640	2660	5030	5030					0.008417747979592605
ATSEIFASK	9	Unmodified	_ATSEIFASK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.250244140625	2	477.250557	952.486562	0.39254	0.00018734	-0.10886	-5.1952E-05	0.28368	0.00013539	477.2501023345401	26.767	0.39297	26.767	26.628	27.021	0					28	9	5	0	0	0	0.021015	1	9261	9261		120.31	50.678	1	1753200			4931	964	2640	2660	5031	5031					0.008417747979592605
ATSEIFASK	9	Unmodified	_ATSEIFASK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2500915527344	2	477.250557	952.486562	-0.11765	-5.6147E-05	-0.57399	-0.00027394	-0.69163	-0.00033008	477.25020938479065	26.75	0.41833	26.75	26.526	26.944	0					17	8	4	0	0	0	5.5435E-08	1	9614	9614		209.19	92.291	1	1011800			4932	964	2640	2660	5032	5032					0.008417747979592605
ATSEIFASK	9	Unmodified	_ATSEIFASK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2507019042969	2	477.250557	952.486562	-0.032608	-1.5562E-05	0.53458	0.00025513	0.50197	0.00023957	477.25037241646044	26.57	0.19145	26.57	26.478	26.67	0					10	4	3	0	0	0	0.026848	1	8565	8565		112.11	43.32	1	116670			4933	964	2640	2660	5033	5033					0.008417747979592605
ATSEIFASK	9	Unmodified	_ATSEIFASK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.25054931640625	2	477.250557	952.486562	-0.34451	-0.00016442	0.51485	0.00024571	0.17034	8.1295E-05	477.2506038925239	26.557	0.23643	26.557	26.467	26.704	0					8	5	2	0	0	0	0.36135	1	8579	8579		45.022	17.975	1	149500			4934	964	2640	2660	5034	5034					0.008417747979592605
ATSEIFASK	9	Unmodified	_ATSEIFASK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2507019042969	2	477.250557	952.486562	-0.6391	-0.00030501	1.177	0.00056171	0.53787	0.0002567	477.2508044409967	26.713	0.31574	26.713	26.603	26.919	0					13	6	3	0	0	0	0.019258	1	9456	9456		123.21	59.001	1	1424300			4935	964	2640	2660	5035	5035					0.008417747979592605
ATSEIFASK	9	Unmodified	_ATSEIFASK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2502746582031	2	477.250557	952.486562	0.81958	0.00039114	-0.46896	-0.00022381	0.35062	0.00016734	477.2499853060975	26.696	0.315	26.696	26.587	26.902	0					13	6	3	0	0	0	0.037712	1	9473	9473		101.46	33.966	1	1053500			4936	964	2640	2660	5036	5036					0.008417747979592605
ATSERHPR	8	Unmodified	_ATSERHPR_					0	0	0			REV__ENST00000520791.5_1_8:99956672-99956810:+|nuORF	REV__ENST00000520791.5_1_8:99956672-99956810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2510070800781	2	477.249215	952.483876	3.4944	0.0016677	-0.46308	-0.000221	3.0313	0.0014467	477.2488854249249	26.499	0.26142	26.499	26.416	26.678	0					15	9	3	0	0	0	0.63077	1	8324	8324		44.117	5.0953	1	114630	+		4937	19950	2641	2661	5037	5037					0.005733641836627612
ATSFIKQIL	9	Unmodified	_ATSFIKQIL_					0	0	0		ENST00000558482.5_1_15:64221904-64332460:-|nuORF;DAPK2|p.P226Lfs*17|1|0.2|ENSG00000035664|chr15:63926076-63926076|G/-|frameshift_variant;ENSG00000035664|ENST00000457488|DAPK2;nc|ENSG00000035664|Q9UIK4-2|DAPK2;ENST00000559007.5_1_15:64204043-64263759:-|nuORF	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.8074951171875	2	510.808042	1019.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.113	1	47.113	46.613	47.613	0								0	0	0	0.1633	1	17322	17322		56.721	3.7844	1				4938	739	2642	2662	5038	5038					0.09251503999769284
ATSGGSAEQIK	11	Unmodified	_ATSGGSAEQIK_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.767822265625	2	524.767103	1047.51965	0.6994	0.00036702	0.15529	8.149E-05	0.85469	0.00044851	524.7674276531385	16.602	0.136	16.602	16.529	16.665	0					6	4	2	0	0	0	0.26168	1	3816	3816		66.92	19.263	1	168490			4939	2831	2643	2663	5039	5039					-0.0022064315000989154
ATSGGSAEQIK	11	Unmodified	_ATSGGSAEQIK_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7672119140625	2	524.767103	1047.51965	0.094239	4.9453E-05	0.052014	2.7295E-05	0.14625	7.6749E-05	524.7670874759677	16.937	0.21192	16.937	16.768	16.98	0					10	5	3	0	0	0	0.045275	1	4678	4678		107.45	41.652	1	925570			4940	2831	2643	2663	5040	5040					-0.0022064315000989154
ATSGGSAEQIK	11	Unmodified	_ATSGGSAEQIK_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7675170898438	2	524.767103	1047.51965	0.59148	0.00031039	0.40169	0.00021079	0.99317	0.00052118	524.767269586271	16.65	0.13669	16.65	16.588	16.725	0					9	6	2	0	0	0	0.57554	1	4040	4040		38.714	5.9017	1	157340			4941	2831	2643	2663	5041	5041					-0.0022064315000989154
ATSGGSAEQIK	11	Unmodified	_ATSGGSAEQIK_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.767333984375	2	524.767103	1047.51965	1.7794	0.00093377	-1.2009	-0.00063018	0.57852	0.00030359	524.7665288338151	16.854	0.20709	16.854	16.757	16.964	0					12	4	4	0	0	0	0.024591	1	4913	4913		117.71	44.826	1	1096900			4942	2831	2643	2663	5042	5042					-0.0022064315000989154
ATSGGSAEQIK	11	Unmodified	_ATSGGSAEQIK_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.767822265625	2	524.767103	1047.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.695	1	16.695	16.195	17.195	0								0	0	0	0.095458	1	4012	4012		77.288	9.7941	1				4943	2831	2643	2663	5043	5043					-0.0022064315000989154
ATSGILGAAS	10	Unmodified	_ATSGILGAAS_					0	0	0			REV__ENST00000287652.8_1_3:10321371-10321626:+|nuORF	REV__ENST00000287652.8_1_3:10321371-10321626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.22955322265625	2	424.229625	846.444697	0.95288	0.00040424	-1.3418	-0.00056925	-0.38897	-0.00016501	424.2291307045641	15.937	0.17795	15.937	15.813	15.991	0					9	4	3	0	0	0	0.49411	1	4234	4234		45.972	0	1	106360	+		4944	18147	2644	2664	5044	5044					0.015332191094216796
ATSGLKIAE	9	Unmodified	_ATSGLKIAE_					0	0	0			REV__ENST00000484563.1_1_1:109955653-109968973:-|nuORF	REV__ENST00000484563.1_1_1:109955653-109968973:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.2541809082031	2	445.2531	888.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.83	1	19.83	19.33	20.33	0								0	0	0	0.3368	1	5462	5462		27.882	1.1893	1		+		4945	15166	2645	2665	5045	5045					0.04294078660575451
ATSGSARKGKR	11	Unmodified	_ATSGSARKGKR_					0	0	0		nc|ENSG00000118156|Q9H0D2-2|ZNF541;ENSG00000118156|ENST00000391901|ZNF541;ZNF541|p.P231Rfs*49|2|0.33|ENSG00000118156|chr19:47545837-47545837|G/-|frameshift_variant;ZNF541|p.T630Pfs*22|1|0.28|ENSG00000118156|chr19:47544641-47544641|T/-|frameshift_variant;ZNF541|p.P998Qfs*46|1|0.22|ENSG00000118156|chr19:47538243-47538243|G/-|frameshift_variant;ZNF541|p.G1117Afs*52|1|0.13|ENSG00000118156|chr19:47531697-47531697|C/-|frameshift_variant	nc|ENSG00000118156|Q9H0D2-2|ZNF541	nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.5523376464844	3	373.551144	1117.6316	3.2262	0.0012052	0.0803	2.9996E-05	3.3065	0.0012352	373.5511700259785	15.074	0.31851	15.074	14.928	15.246	0					16	6	4	0	0	0	0.74458	1	3892	3892		23.378	0.79825	1	757030			4946	3064	2646	2666	5046	5046					0.07749255717658343
ATSGSTGSVEK	11	Unmodified	_ATSGSTGSVEK_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-3|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2515258789062	2	512.251286	1022.48802	1.0505	0.00053811	-0.83922	-0.00042989	0.21127	0.00010822	512.2508354055218	13.864	0.16668	13.864	13.82	13.987	0					9	4	3	0	0	0	0.051542	1	3260	3260		104.42	35.637	1	284340			4947	4788	2647	2667	5047	5047					-0.022326359039311683
ATSGSTGSVEK	11	Unmodified	_ATSGSTGSVEK_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-3|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2516479492188	2	512.251286	1022.48802	1.2512	0.00064092	-0.7906	-0.00040499	0.46059	0.00023594	512.2508268014525	13.832	0.3111	13.832	13.778	14.09	0					15	6	4	0	0	0	6.3833E-05	1	3466	3466		154.01	74.56	1	1066500			4948	4788	2647	2667	5048	5048					-0.022326359039311683
ATSGSWGGVM	10	Unmodified	_ATSGSWGGVM_					0	0	0		ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7133483886719	2	476.713285	951.412016	-0.36308	-0.00017309	1.0575	0.00050413	0.69443	0.00033104	476.7137531144784	41.77	0.18894	41.77	41.692	41.881	0					15	9	2	0	0	0	0.65213	1	15859	15859		27.882	2.4321	1	62792			4949	9573	2648	2668	5049	5049					-0.06563311285060536
ATSGTFALK	9	Unmodified	_ATSGTFALK_					0	0	0			REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2474670410156	2	448.247818	894.481082	0.61647	0.00027633	-1.1803	-0.00052909	-0.56388	-0.00025276	448.24728212457944	22.438	0.44472	22.438	22.295	22.739	0					13	10	2	0	0	0	0.25716	1	7298	7298		54.776	1.4249	1	770690	+		4950	21709	2649	2669	5050	5050					0.02962096006149295
ATSGVAAVLAG	11	Unmodified	_ATSGVAAVLAG_					0	0	0		SLC25A51|p.P231Sfs*3|1|0.33|ENSG00000122696|chr9:37887860-37887861|-/A|frameshift_variant;SLC25A51|p.I285Hfs*7|1|0.38|ENSG00000122696|chr9:37887699-37887700|-/C|frameshift_variant;SLC25A51|p.I257Nfs*35|1|0.06|ENSG00000122696|chr9:37887781-37887782|-/T|frameshift_variant;ENSG00000122696|ENST00000242275|SLC25A51	SLC25A51|p.P231Sfs*3|1|0.33|ENSG00000122696|chr9:37887860-37887861|-/A|frameshift_variant	SLC25A51|p.P231Sfs*3|1|0.33|ENSG00000122696|chr9:37887860-37887861|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.75836181640625	2	458.758549	915.502546	0.088674	4.068E-05	-0.31524	-0.00014462	-0.22656	-0.00010394	458.7583634080264	24.038	0.26332	24.038	23.926	24.189	0					9	6	2	0	0	0	0.11959	1	7442	7442		84.916	2.675	1	593840			4951	3281	2650	2670	5051	5051					0.04141481034844219
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.25323486328125	2	430.253434	858.492316	0.18261	7.8567E-05	-0.70097	-0.0003016	-0.51837	-0.00022303	430.2531282611153	21.316	0.1869	21.316	21.235	21.422	0					9	5	3	0	0	0	0.037569	1	5848	5848		101.6	30.305	1	258710			4952	1521	2651	2671	5052	5052					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.25335693359375	2	430.253434	858.492316	0.79076	0.00034023	-1.1906	-0.00051225	-0.39982	-0.00017202	430.25289468600994	21.62	0.19135	21.62	21.518	21.71	0					11	4	3	0	0	0	0.0051608	1	6907	6907		157.33	45.681	1	1669100			4953	1521	2651	2671	5053	5053					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2532653808594	2	430.253434	858.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.347	1	21.347	20.847	21.847	0								0	0	0	0.14033	1	6114	6114		62.107	19.243	1				4954	1521	2651	2671	5054	5054					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2532043457031	2	430.253434	858.492316	-0.8749	-0.00037643	-0.32944	-0.00014174	-1.2043	-0.00051817	430.2533205254151	21.309	0.10653	21.309	21.254	21.361	0					5	3	2	0	0	0	0.1424	1	6109	6109		69.628	11.398	1	54849			4955	1521	2651	2671	5055	5055					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2532653808594	2	430.253434	858.492316	-0.5046	-0.00021711	-0.25263	-0.00010869	-0.75723	-0.0003258	430.2533099269351	21.534	0.21849	21.534	21.424	21.642	0					10	4	3	0	0	0	0.0025305	1	7146	7146		171.38	50.764	1	1072500			4956	1521	2651	2671	5056	5056					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2535705566406	2	430.253434	858.492316	0.18953	8.1546E-05	-0.077717	-3.3438E-05	0.11181	4.8108E-05	430.2534890829013	21.366	0.15402	21.366	21.311	21.465	0					5	3	2	0	0	0	0.019882	1	6191	6191		122.18	45.402	1	145560			4957	1521	2651	2671	5057	5057					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2532043457031	2	430.253434	858.492316	-0.31791	-0.00013678	0.0092086	3.962E-06	-0.3087	-0.00013282	430.2534444427379	21.397	0.15396	21.397	21.294	21.448	0					5	3	2	0	0	0	0.19605	1	6207	6207		62.107	16.155	1	183430			4958	1521	2651	2671	5058	5058					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.2531433105469	2	430.253434	858.492316	-0.45031	-0.00019375	-0.043543	-1.8734E-05	-0.49386	-0.00021248	430.2533684385332	21.533	0.2159	21.533	21.437	21.653	0					12	4	4	0	0	0	0.00024018	1	7018	7018		190.52	69.897	1	946220			4959	1521	2651	2671	5059	5059					0.057409181002867626
ATSHALAL	8	Unmodified	_ATSHALAL_					0	0	0			REV__POU3F3|p.G348Afs*21|1|0.17|ENSG00000198914|chr2:104856551-104856551|G/-|frameshift_variant	REV__POU3F3|p.G348Afs*21|1|0.17|ENSG00000198914|chr2:104856551-104856551|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.557861328125	2	392.221603	782.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.937	1	13.937	13.437	14.437	0								0	0	0	1.7419	1	3286	3286		31.579	1.7373	1		+		4960	21401	2652	2672	5060	5060					0.028735576631788717
ATSHLLDLR	9	Unmodified	_ATSHLLDLR_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.291259765625	2	513.290548	1024.56654	3.1626	0.0016234	0.54013	0.00027724	3.7028	0.0019006	513.2906608361642	49.481	0.22992	49.481	49.382	49.612	0					15	10	2	0	0	0	0.41113	1	19549	19549		40.778	5.1599	1	327220	+		4961	17281	2653	2673	5061	5061					0.055242611917947215
ATSIPAILK	9	Unmodified	_ATSIPAILK_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.289306640625	2	457.289485	912.564418	-0.43527	-0.00019905	-0.029391	-1.344E-05	-0.46466	-0.00021249	457.2894415292177	36.948	0.95451	36.948	36.233	37.187	0					45	19	3	0	0	0	0.25716	1	14473	14473		54.776	8.8244	1	580910			4962	2613	2654	2674	5062	5062					0.104638324540133
ATSKHLSGARS	11	Unmodified	_ATSKHLSGARS_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.803955078125	2	557.801811	1113.58907	3.4792	0.0019407	0.39818	0.00022211	3.8773	0.0021628	557.8020356625779	18.396	0.36521	18.396	18.337	18.702	0					18	7	4	0	0	0	0.18431	1	5509	5509		76.17	17.388	1	6641400	+		4963	13899	2655	2675	5063	5063					0.03681860589426833
ATSKIPLAL	9	Unmodified	_ATSKIPLAL_					0	0	0		MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2896423339844	2	457.289485	912.564418	0.049387	2.2584E-05	-0.014374	-6.5732E-06	0.035013	1.6011E-05	457.2894835608625	36.775	0.35335	36.775	36.587	36.94	0					26	16	2	0	0	0	0.48389	1	13133	13133		34.173	0	1	69983			4964	6840	2656	2676	5064	5064					0.10463832454001931
ATSKLITPREQ	11	Unmodified	_ATSKLITPREQ_					0	0	0			REV__nc|ENSG00000197375|O76082-2|SLC22A5	REV__nc|ENSG00000197375|O76082-2|SLC22A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.23822021484375	3	415.238343	1242.6932	0.064831	2.692E-05	-0.87177	-0.00036199	-0.80694	-0.00033507	415.23816184926034	30.521	1.173	30.521	30.416	31.589	0					81	26	5	0	0	0	0.75314	1	11575	11575		22.562	4.0305	1	35624000	+		4965	17329	2657	2677	5065	5065					0.08156142626285146
ATSKPPAQ	8	Unmodified	_ATSKPPAQ_					0	0	0			REV__ENST00000589695.1_1_6:41243865-41248907:-|nuORF	REV__ENST00000589695.1_1_6:41243865-41248907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2190246582031	2	400.21906	798.423567	0.9343	0.00037393	-0.78227	-0.00031308	0.15203	6.0845E-05	400.2187240437228	14.271	0.28808	14.271	14.061	14.349	0					11	7	2	0	0	0	0.49216	1	3451	3451		60.972	15.02	1	97989	+		4966	14415	2658	2678	5066	5066					0.016292538005700408
ATSKPPAQ	8	Unmodified	_ATSKPPAQ_					0	0	0			REV__ENST00000589695.1_1_6:41243865-41248907:-|nuORF	REV__ENST00000589695.1_1_6:41243865-41248907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.21917724609375	2	400.21906	798.423567	0.068216	2.7301E-05	-0.31163	-0.00012472	-0.24342	-9.7421E-05	400.2188798765491	14.201	0.31021	14.201	13.991	14.301	0					10	6	2	0	0	0	0.78142	1	3616	3616		23.042	1.0826	1	162610	+		4967	14415	2658	2678	5067	5067					0.016292538005700408
ATSKPVPAEK	10	Unmodified	_ATSKPVPAEK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2929077148438	2	514.292756	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.175	1	14.175	13.675	14.675	0								0	0	0	0.25756	1	2881	2881		37.508	14.466	1				4968	6926	2659	2679	5068	5068					0.058737256147196604
ATSKPVPAEK	10	Unmodified	_ATSKPVPAEK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2926025390625	2	514.292756	1026.57096	1.1481	0.00059045	-1.1329	-0.00058262	0.015217	7.8258E-06	514.292171119149	14.462	0.28908	14.462	14.3	14.589	0					16	7	3	0	0	0	0.05301	1	3522	3522		96.665	34.974	1	541290			4969	6926	2659	2679	5069	5069					0.058737256147196604
ATSKVALVY	9	Unmodified	_ATSKVALVY_					0	0	0		ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2787170410156	2	476.279118	950.543683	0.00065076	3.0994E-07	-0.3357	-0.00015989	-0.33505	-0.00015958	476.2789599493479	32.348	0.15343	32.348	32.277	32.43	0					11	6	2	0	0	0	0.35021	1	10441	10441		45.972	15.469	1	117440			4970	2649	2660	2680	5070	5070					0.06643242074335376
ATSKVALVY	9	Unmodified	_ATSKVALVY_					0	0	0		ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.279052734375	2	476.279118	950.543683	0.35747	0.00017025	-0.73612	-0.0003506	-0.37865	-0.00018034	476.27865372899305	32.63	0.29419	32.63	32.543	32.837	0					16	7	3	0	0	0	0.36892	1	11986	11986		44.377	12.422	1	707590			4971	2649	2660	2680	5071	5071					0.06643242074335376
ATSKVALVY	9	Unmodified	_ATSKVALVY_					0	0	0		ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2786865234375	2	476.279118	950.543683	-0.38059	-0.00018127	0.17241	8.2113E-05	-0.20819	-9.9155E-05	476.27922222707815	32.389	0.27273	32.389	32.314	32.587	0					15	8	3	0	0	0	0.24095	1	11255	11255		56.721	8.8055	1	196290			4972	2649	2660	2680	5072	5072					0.06643242074335376
ATSKVALVY	9	Unmodified	_ATSKVALVY_					0	0	0		ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2786560058594	2	476.279118	950.543683	2.2773	0.0010846	-2.6267	-0.001251	-0.34938	-0.0001664	476.2778802043162	32.548	0.36776	32.548	32.438	32.806	0					13	7	2	0	0	0	0.22837	1	12295	12295		58.23	24.714	1	909330			4973	2649	2660	2680	5073	5073					0.06643242074335376
ATSLFIKLN	9	Unmodified	_ATSLFIKLN_					0	0	0		ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.800048828125	2	503.800217	1005.58588	0.75635	0.00038105	-2.2085	-0.0011126	-1.4521	-0.00073157	503.7999186647433	41.597	0.20559	41.597	41.537	41.743	0					16	10	2	0	0	0	0.17854	1	15804	15804		64.207	0.67341	1	89749			4974	5316	2661	2681	5074	5074					0.083312174826915
ATSLGHFTK	9	Unmodified	_ATSLGHFTK_					0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;ENST00000540885.1_1_12:1016996-1017955:+|nuORF	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2585754394531	2	481.258717	960.50288	-0.13396	-6.4469E-05	-0.47307	-0.00022767	-0.60703	-0.00029214	481.25850367244254	22.157	0.41298	22.157	22.017	22.43	0					29	9	5	0	0	0	0.035106	1	7140	7140		104.01	29.759	1	6564800			4975	11431	2662	2682	5075	5075					0.02104900754704886
ATSLGHFTK	9	Unmodified	_ATSLGHFTK_					0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;ENST00000540885.1_1_12:1016996-1017955:+|nuORF	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.25823974609375	2	481.258717	960.50288	-1.3487	-0.00064907	0.50098	0.0002411	-0.84772	-0.00040797	481.25889007838543	21.816	0.21023	21.816	21.746	21.956	0					14	6	3	0	0	0	0.10506	1	6319	6319		78.264	16.156	1	523050			4976	11431	2662	2682	5076	5076					0.02104900754704886
ATSLSRVSRM	10	Unmodified	_ATSLSRVSRM_					0	0	0		ENST00000439587.6_1_9:35835156-35841170:+|nuORF	ENST00000439587.6_1_9:35835156-35841170:+|nuORF	ENST00000439587.6_1_9:35835156-35841170:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.8680725097656	3	369.869485	1106.58663	-1.019	-0.0003769	-2.1406	-0.00079173	-3.1596	-0.0011686	369.8685708051209	18.985	0.15674	18.985	18.936	19.093	0					9	5	3	0	0	0	0.4758	1	5077	5077		47.96	0	1	88110			4977	9565	2663	2683	5077	5077					0.037596888601228784
ATSLVAVAP	9	Unmodified	_ATSLVAVAP_					0	0	0		ENST00000545366.1_1_11:64055563-64055821:+|nuORF	ENST00000545366.1_1_11:64055563-64055821:+|nuORF	ENST00000545366.1_1_11:64055563-64055821:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.7447814941406	2	414.744911	827.475269	1.0131	0.00042016	-0.96947	-0.00040208	0.043585	1.8077E-05	414.74447113795304	35.62	0.61797	35.62	35.178	35.796	0					28	17	2	0	0	0	0.1236	1	13852	13852		73.975	4.3471	1	232080			4978	10576	2664	2684	5078	5078					0.054629974944646165
ATSLVDQQLRL	11	Unmodified	_ATSLVDQQLRL_					0	0	0			REV__ENST00000368750.7_1_1:153066129-153066971:-|nuORF	REV__ENST00000368750.7_1_1:153066129-153066971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.57269287109375	3	415.238343	1242.6932	0.064831	2.692E-05	-0.87177	-0.00036199	-0.80694	-0.00033507	415.23816184926034	30.521	1.173	30.521	30.416	31.589	0					81	26	5	0	0	0	0.55968	1	11409	11409		39.873	0	1	35624000	+		4979	18612	2665	2685	5079	5079					0.08156142626262408
ATSLVDQQLRL	11	Unmodified	_ATSLVDQQLRL_					0	0	0			REV__ENST00000368750.7_1_1:153066129-153066971:-|nuORF	REV__ENST00000368750.7_1_1:153066129-153066971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.2381896972656	3	415.238343	1242.6932	1.0258	0.00042595	-0.87281	-0.00036242	0.15299	6.3526E-05	415.2381445621112	30.09	0.3625	30.09	29.98	30.342	0					17	7	3	0	0	0	0.54316	1	11113	11113		41.08	2.3265	1	891020	+		4980	18612	2665	2685	5080	5080					0.08156142626262408
ATSLVFKQK	9	Unmodified	_ATSLVFKQK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.3056945800781	2	511.305667	1020.59678	-0.12806	-6.5477E-05	0.58827	0.00030078	0.46021	0.00023531	511.3060017546709	22.7	0.16181	22.7	22.619	22.781	0					11	5	3	0	0	0	0.055856	1	6457	6457		93.195	16.421	1	247490			4981	7882	2666	2686	5081	5081					0.08730619856999056
ATSLVFKQK	9	Unmodified	_ATSLVFKQK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.305908203125	2	511.305667	1020.59678	-0.0018186	-9.2987E-07	-0.031971	-1.6347E-05	-0.03379	-1.7277E-05	511.3055762779918	23.043	0.17652	23.043	22.958	23.134	0					13	4	4	0	0	0	0.015496	1	7564	7564		129.42	49.709	1	1795600			4982	7882	2666	2686	5082	5082					0.08730619856999056
ATSLVFKQK	9	Unmodified	_ATSLVFKQK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.30548095703125	2	511.305667	1020.59678	-0.22634	-0.00011573	0.31286	0.00015997	0.086525	4.4241E-05	511.30572225576674	22.758	0.16816	22.758	22.649	22.818	0					15	6	3	0	0	0	0.11898	1	6735	6735		75.043	5.4157	1	304370			4983	7882	2666	2686	5083	5083					0.08730619856999056
ATSLVFKQK	9	Unmodified	_ATSLVFKQK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.30572509765625	2	511.305667	1020.59678	-0.43778	-0.00022384	0.60348	0.00030856	0.16571	8.4726E-05	511.30590854272515	22.981	0.26674	22.981	22.828	23.095	0					15	5	4	0	0	0	0.00024018	1	7843	7843		190.52	88.917	1	1534700			4984	7882	2666	2686	5084	5084					0.08730619856999056
ATSNFARVK	9	Unmodified	_ATSNFARVK_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2772216796875	2	497.277441	992.540328	-0.73984	-0.00036791	-0.52046	-0.00025881	-1.2603	-0.00062672	497.2776405625686	18.864	0.29008	18.864	18.677	18.967	0					10	6	3	0	0	0	0.085655	1	5873	5873		82.75	31.415	1	495990			4985	2469	2667	2687	5085	5085					0.04375992020334252
ATSNVHMVK	9	Unmodified	_ATSNVHMVK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7575378417969	2	493.758027	985.5015	-0.068558	-3.3851E-05	-0.94675	-0.00046747	-1.0153	-0.00050132	493.7578727990381	16.928	0.1295	16.928	16.857	16.986	0					14	5	4	0	0	0	0.16806	1	3937	3937		65.465	28.306	1	409240			4986	7441	2668	2688	5086	5086					0.008169433943066906
ATSNVHMVK	9	Unmodified	_ATSNVHMVK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7580871582031	2	493.758027	985.5015	-0.47633	-0.00023519	0.28846	0.00014243	-0.18787	-9.2762E-05	493.75826982272963	17.26	0.5308	17.26	16.969	17.499	0					21	13	4	0	0	0	0.022525	1	4823	4823		117.81	43.556	1	2203500			4987	7441	2668	2688	5087	5087					0.008169433943066906
ATSNVHMVK	9	Unmodified	_ATSNVHMVK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7579345703125	2	493.758027	985.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.997	1	16.997	16.497	17.497	0								0	0	0	0.11963	1	4174	4174		66.962	19.046	1				4988	7441	2668	2688	5088	5088					0.008169433943066906
ATSNVHMVK	9	Unmodified	_ATSNVHMVK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7579650878906	2	493.758027	985.5015	-0.74836	-0.00036951	0.68776	0.00033958	-0.060609	-2.9926E-05	493.75827101238247	17.191	0.40837	17.191	16.98	17.388	0					11	8	2	0	0	0	0.022525	1	5071	5071		117.81	38.36	1	1455200			4989	7441	2668	2688	5089	5089					0.008169433943066906
ATSNVHMVK	9	Unmodified	_ATSNVHMVK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7589416503906	2	493.758027	985.5015	-2.5505	-0.0012593	2.9365	0.0014499	0.38601	0.0001906	493.75967413621976	17.025	0.073517	17.025	16.957	17.031	0					4	2	2	0	0	0	0.24334	1	4156	4156		56.434	15.656	1	82327			4990	7441	2668	2688	5090	5090					0.008169433943066906
ATSNVHMVKK	10	Unmodified	_ATSNVHMVKK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.8057861328125	2	557.805508	1113.59646	1.2947	0.0007222	-0.97598	-0.00054441	0.31874	0.0001778	557.8050290633163	14.682	0.073346	14.682	14.646	14.719	0					4	2	2	0	0	0	0.037099	1	3067	3067		112.3	38.04	1	391070			4991	7441	2669	2689	5091	5091					0.044208768654925734
ATSNVHMVKK	10	Unmodified	_ATSNVHMVKK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.2060546875	3	372.206098	1113.59646	0.78238	0.00029121	-0.88298	-0.00032865	-0.1006	-3.7443E-05	372.2058093283011	14.985	0.13433	14.985	14.902	15.037	0					6	3	2	0	0	0	0.64646	1	3783	3783		28.577	0.49524	1	1822800			4992	7441	2669	2689	5092	5092					0.044208768654925734
ATSNVHMVKK	10	Unmodified	_ATSNVHMVKK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.8063354492188	2	557.805508	1113.59646	0.54234	0.00030252	0.7432	0.00041456	1.2855	0.00071708	557.8060475944536	14.976	0.22611	14.976	14.891	15.117	0					10	5	3	0	0	0	0.0084686	1	3774	3774		140.11	52.358	1	3149900			4993	7441	2669	2689	5093	5093					0.044208768654925734
ATSNVHMVKK	10	Unmodified	_ATSNVHMVKK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8052978515625	2	557.805508	1113.59646	-0.48692	-0.0002716	0.36745	0.00020497	-0.11946	-6.6637E-05	557.8055934594726	14.726	0.10074	14.726	14.661	14.762	0					7	4	2	0	0	0	0.4737	1	3231	3231		51.528	3.8704	1	163510			4994	7441	2669	2689	5094	5094					0.044208768654925734
ATSNVHMVKK	10	Unmodified	_ATSNVHMVKK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.80517578125	2	557.805508	1113.59646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.766	1	14.766	14.266	15.266	0								0	0	0	0.26922	1	3194	3194		51.528	21.21	1				4995	7441	2669	2689	5095	5095					0.044208768654925734
ATSNVHMVKK	10	Unmodified	_ATSNVHMVKK_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.20587158203125	3	372.206098	1113.59646	-0.29587	-0.00011012	-0.32245	-0.00012002	-0.61832	-0.00023014	372.2059805778708	14.919	0.16953	14.919	14.86	15.029	0					5	3	2	0	0	0	0.60281	1	3831	3831		33.922	12.236	1	612250			4996	7441	2669	2689	5096	5096					0.044208768654925734
ATSPAGTAQAR	11	Unmodified	_ATSPAGTAQAR_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.C2696Sfs*49|1|0.18|ENSG00000142798|chr1:21847425-21847431|GCCCGGC/-|frameshift_variant;HSPG2|p.P3112Lfs*13|1|0.47|ENSG00000142798|chr1:21841279-21841279|G/-|frameshift_variant;HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant;HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7674560546875	2	515.767437	1029.52032	1.2135	0.00062588	-0.2824	-0.00014565	0.93109	0.00048023	515.7672231270295	16.07	0.26566	16.07	15.897	16.163	0					10	6	2	0	0	0	0.50799	1	4297	4297		43.651	4.6293	1	143290			4997	4513	2670	2690	5097	5097					0.0067419628969673795
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.R3078W|1|0.11|ENSG00000197102|chr14:102027802-102027802|C/T|missense_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7641296386719	2	488.764166	975.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.859	1	29.859	29.359	30.359	0								0	0	0	0.1633	1	9458	9458		56.721	12.344	1				4998	7426	2671	2691	5098	5098					0.02504303129001073
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.R3078W|1|0.11|ENSG00000197102|chr14:102027802-102027802|C/T|missense_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7636413574219	2	488.764166	975.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.155	1	30.155	29.655	30.655	0								0	0	0	0.0075199	1	10844	10844		112.41	48.877	1				4999	7426	2671	2691	5099	5099					0.02504303129001073
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.R3078W|1|0.11|ENSG00000197102|chr14:102027802-102027802|C/T|missense_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7634582519531	2	488.764166	975.513779	-1.2506	-0.00061126	0.5316	0.00025983	-0.71902	-0.00035143	488.7644332578313	29.929	0.36711	29.929	29.831	30.198	0					33	14	3	0	0	0	0.59802	1	9759	9759		21.96	0	1	1057300			5000	7426	2671	2691	5100	5100					0.02504303129001073
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.R3078W|1|0.11|ENSG00000197102|chr14:102027802-102027802|C/T|missense_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7638244628906	2	488.764166	975.513779	0.61409	0.00030014	-1.2132	-0.00059296	-0.59911	-0.00029282	488.7636150574353	30.186	0.42251	30.186	29.993	30.416	0					28	9	5	0	0	0	0.023074	1	11225	11225		116.9	65.568	1	4986800			5001	7426	2671	2691	5101	5101					0.02504303129001073
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.R3078W|1|0.11|ENSG00000197102|chr14:102027802-102027802|C/T|missense_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7636413574219	2	488.764166	975.513779	-0.17494	-8.5505E-05	-0.1805	-8.8223E-05	-0.35544	-0.00017373	488.76383346441213	29.962	0.31944	29.962	29.839	30.158	0					21	8	4	0	0	0	0.24095	1	10122	10122		56.721	26.217	1	757070			5002	7426	2671	2691	5102	5102					0.02504303129001073
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.R3078W|1|0.11|ENSG00000197102|chr14:102027802-102027802|C/T|missense_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7640075683594	2	488.764166	975.513779	0.78693	0.00038462	-0.83899	-0.00041007	-0.052057	-2.5443E-05	488.7636171668565	30.09	0.3625	30.09	29.98	30.342	0					13	7	2	0	0	0	0.07136	1	11086	11086		87.696	40.039	1	4512300			5003	7426	2671	2691	5103	5103					0.02504303129001073
ATSPDFDGK	9	Unmodified	_ATSPDFDGK_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2181091308594	2	469.216714	936.418876	3.9231	0.0018408	-0.78935	-0.00037038	3.1337	0.0014704	469.21638254963176	22.416	0.2537	22.416	22.3	22.554	0					16	7	3	0	0	0	0.12239	1	6581	6581		74.255	0.28031	1	396470			5004	7034	2672	2692	5104	5104					-0.051876751328450155
ATSPIIIHR	9	Unmodified	_ATSPIIIHR_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.3028259277344	2	504.303458	1006.59236	-0.062319	-3.1428E-05	-0.091779	-4.6285E-05	-0.1541	-7.7712E-05	504.3032623270187	24.827	0.21243	24.827	24.708	24.92	0					12	6	3	0	0	0	0.24095	1	7391	7391		56.721	3.3696	1	99296			5005	3983	2673	2693	5105	5105					0.08933155434090168
ATSPIIIHR	9	Unmodified	_ATSPIIIHR_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.3033142089844	2	504.303458	1006.59236	-0.056467	-2.8477E-05	-0.52397	-0.00026424	-0.58044	-0.00029272	504.3032920577809	25.141	0.44608	25.141	24.969	25.415	0					19	10	3	0	0	0	0.27249	1	8543	8543		52.937	5.2794	1	635520			5006	3983	2673	2693	5106	5106					0.08933155434090168
ATSPIIIHR	9	Unmodified	_ATSPIIIHR_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.303466796875	2	504.303458	1006.59236	-0.45353	-0.00022872	0.072795	3.6711E-05	-0.38074	-0.00019201	504.30346970756005	25.081	0.31544	25.081	24.924	25.239	0					13	6	3	0	0	0	0.19605	1	8848	8848		62.107	17.991	1	538840			5007	3983	2673	2693	5107	5107					0.08933155434090168
ATSPIIIHRL	10	Unmodified	_ATSPIIIHRL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8455810546875	2	560.84549	1119.67643	-0.032396	-1.8169E-05	0.81716	0.0004583	0.78476	0.00044013	560.8459872443599	32.117	0.20959	32.117	32.015	32.225	0					7	4	2	0	0	0	0.41055	1	12189	12189		42.864	16.171	1	135630			5008	3983	2674	2694	5108	5108					0.12137686530991232
ATSPLHINK	9	Unmodified	_ATSPLHINK_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7799377441406	2	490.779816	979.545079	-1.2578	-0.0006173	1.0011	0.00049133	-0.25666	-0.00012596	490.7803897827041	21.469	0.23778	21.469	21.316	21.553	0					13	7	2	0	0	0	0.35021	1	6171	6171		45.972	10.354	1	75596			5009	1806	2675	2695	5109	5109					0.054488761630864246
ATSPLHINK	9	Unmodified	_ATSPLHINK_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.779541015625	2	490.779816	979.545079	0.59145	0.00029027	-1.0401	-0.00051046	-0.44866	-0.00022019	490.779354768204	21.667	0.41829	21.667	21.357	21.776	0					18	8	3	0	0	0	0.078509	1	7229	7229		85.161	23.053	1	729250			5010	1806	2675	2695	5110	5110					0.054488761630864246
ATSQAQAGWL	10	Unmodified	_ATSQAQAGWL_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7604370117188	2	516.759081	1031.50361	-0.0034973	-1.8073E-06	1.7936	0.00092688	1.7901	0.00092507	516.760363704912	22.662	0.10253	22.662	22.596	22.699	0					8	3	3	0	0	0	0.56931	1	6716	6716		37.812	4.9991	1	71339			5011	3943	2676	2696	5111	5111					-0.010883045962373217
ATSQQPLRK	9	Unmodified	_ATSQQPLRK_					0	0	0		nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	nc|ENSG00000164402|Q92599-3|SEPTIN8	nc|ENSG00000164402|Q92599-3|SEPTIN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.7966918945312	2	514.795998	1027.57744	-0.15506	-7.9824E-05	0.91456	0.00047081	0.7595	0.00039099	514.7965112149504	14.188	0.10247	14.188	14.16	14.262	0					5	4	2	0	0	0	0.27249	1	3031	3031		52.937	8.4056	1	70239			5012	5688	2677	2697	5112	5112					0.06475663566084222
ATSQQPLRK	9	Unmodified	_ATSQQPLRK_					0	0	0		nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	nc|ENSG00000164402|Q92599-3|SEPTIN8	nc|ENSG00000164402|Q92599-3|SEPTIN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7959594726562	2	514.795998	1027.57744	1.3837	0.00071234	-1.5456	-0.00079567	-0.16187	-8.3331E-05	514.7952016688386	14.455	0.14659	14.455	14.406	14.553	0					9	3	4	0	0	0	0.19952	1	3762	3762		61.691	3.88	1	642750			5013	5688	2677	2697	5113	5113					0.06475663566084222
ATSRGTDIR	9	Unmodified	_ATSRGTDIR_					0	0	0		ENST00000414845.5_1_3:183961725-183966669:-|nuORF;ENST00000488976.5_1_3:183962900-183966721:-|nuORF;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	ENST00000414845.5_1_3:183961725-183966669:-|nuORF	ENST00000414845.5_1_3:183961725-183966669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7638854980469	2	488.762155	975.509757	2.607	0.0012742	1.0291	0.00050296	3.6361	0.0017772	488.7627121235307	30.123	0.41286	30.123	29.963	30.376	0					24	8	4	0	0	0	0.16806	1	11099	11099		65.465	24.687	1	3620900			5014	7809	2678	2698	5114	5114					0.021022136352826237
ATSRLLLLL	9	Unmodified	_ATSRLLLLL_					0	0	0		SHBG|p.L175Afs*39|1|0.38|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant;SHBG|p.L175Cfs*45|1|0.53|ENSG00000129214|chr17:7631323-7631323|G/-|frameshift_variant;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;SHBG|p.C362Afs*2|1|0.14|ENSG00000129214|chr17:7633223-7633223|T/-|frameshift_variant;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG	SHBG|p.L175Afs*39|1|0.38|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant	SHBG|p.L175Afs*39|1|0.38|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.89013671875	3	333.890215	998.648816	0.2548	8.5075E-05	-0.66309	-0.0002214	-0.40829	-0.00013632	333.88991574309796	30.172	0.14315	30.172	30.084	30.227	0					7	5	2	0	0	0	0.56424	1	9590	9590		25.574	7.2496	1	37988			5015	3584	2679	2699	5115	5115					0.14943783270780386
ATSRTYLYR	9	Unmodified	_ATSRTYLYR_					0	0	0		ENSG00000169972|ENST00000379031|PUSL1;ENST00000493657.1_1_1:1244633-1244984:+|nuORF;ENST00000463758.1_1_1:1244702-1244984:+|nuORF;ENST00000470520.5_1_1:1244480-1246298:+|nuORF;PUSL1|p.E212Rfs*26|1|0.16|ENSG00000169972|chr1:1309836-1309836|C/-|frameshift_variant	ENSG00000169972|ENST00000379031|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.53662109375	3	377.536612	1129.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.333	1	22.333	21.833	22.833	0								0	0	0	0.2591	1	7238	7238		67.494	38.917	1				5016	6200	2680	2700	5116	5116					0.02839646220513714
ATSSALLRGA	10	Unmodified	_ATSSALLRGA_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.76922607421875	2	473.769448	945.524344	-0.28759	-0.00013625	-0.73165	-0.00034664	-1.0192	-0.00048289	473.7690784378175	17.106	0.29851	17.106	17.033	17.332	0					24	9	4	0	0	0	0.12896	1	4003	4003		90.37	16.115	1	1255200	+		5017	20948	2681	2701	5117	5117					0.04940285783436593
ATSSALLRGA	10	Unmodified	_ATSSALLRGA_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.76934814453125	2	473.769448	945.524344	-0.60925	-0.00028864	-0.049349	-2.338E-05	-0.6586	-0.00031202	473.76939734031976	17.38	0.55174	17.38	17.234	17.785	0					23	11	4	0	0	0	0.28036	1	5144	5144		69.628	5.4204	1	5275700	+		5018	20948	2681	2701	5118	5118					0.04940285783436593
ATSSRRPPR	9	Unmodified	_ATSSRRPPR_					0	0	0			REV__ENST00000525036.1_1_13:48877982-48934322:+|nuORF	REV__ENST00000525036.1_1_13:48877982-48934322:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1977233886719	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.556	1	52.556	52.056	53.056	0								0	0	0	0.33029	1	20391	20391		29.17	6.5904	1		+		5019	19982	2682	2702	5119	5119					0.0560531500043453
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.25091552734375	2	447.250557	892.486562	0.12498	5.5898E-05	0.11427	5.1105E-05	0.23925	0.000107	447.2506469501891	18.373	0.14903	18.373	18.286	18.435	0					14	6	3	0	0	0	0.095583	1	4549	4549		80.455	25.678	1	262920			5020	8680	2683	2703	5120	5120					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2504577636719	2	447.250557	892.486562	0.60988	0.00027277	-0.6313	-0.00028235	-0.021425	-9.5825E-06	447.2502539449647	18.686	0.25637	18.686	18.559	18.816	0					17	6	4	0	0	0	0.02953	1	5503	5503		109.48	52.757	1	2139600			5021	8680	2683	2703	5121	5121					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.2507629394531	2	447.250557	892.486562	-1.1715	-0.00052396	1.0208	0.00045655	-0.15073	-6.7414E-05	447.2509313032074	18.389	0.18991	18.389	18.283	18.473	0					13	7	2	0	0	0	0.47473	1	4776	4776		35.152	4.8343	1	287500			5022	8680	2683	2703	5122	5122					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.2503356933594	2	447.250557	892.486562	0.61033	0.00027297	-1.1895	-0.00053199	-0.57913	-0.00025902	447.2500390804173	18.603	0.21774	18.603	18.493	18.711	0					10	4	3	0	0	0	0.01873	1	5748	5748		124.08	33.71	1	1795400			5023	8680	2683	2703	5123	5123					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2507629394531	2	447.250557	892.486562	0.50061	0.0002239	-0.1042	-4.6603E-05	0.39641	0.0001773	447.250497540701	18.42	0.18272	18.42	18.346	18.529	0					7	5	2	0	0	0	0.11898	1	4796	4796		75.043	27.386	1	201810			5024	8680	2683	2703	5124	5124					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2506103515625	2	447.250557	892.486562	-0.39094	-0.00017485	0.39277	0.00017566	0.0018222	8.1499E-07	447.2506963989095	18.439	0.15177	18.439	18.335	18.487	0					10	4	3	0	0	0	0.037924	1	4805	4805		101.25	46.476	1	329750			5025	8680	2683	2703	5125	5125					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2503967285156	2	447.250557	892.486562	-0.4265	-0.00019075	0.27227	0.00012177	-0.15423	-6.898E-05	447.2506138986948	18.581	0.44234	18.581	18.471	18.914	0					15	9	4	0	0	0	0.02953	1	5598	5598		109.48	50.696	1	1689200			5026	8680	2683	2703	5126	5126					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2503356933594	2	447.250557	892.486562	0.84002	0.0003757	-0.94438	-0.00042237	-0.10435	-4.6672E-05	447.25009420933196	18.613	0.21319	18.613	18.506	18.719	0					12	4	4	0	0	0	0.013878	1	5591	5591		132.76	66.329	1	2721900			5027	8680	2683	2703	5127	5127					0.036017747979599335
ATSSVSALK	9	Unmodified	_ATSSVSALK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENST00000539357.1_1_12:133257669-133263919:-|nuORF;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.2452697753906	2	432.245275	862.475997	0.17822	7.7033E-05	-0.1448	-6.259E-05	0.033414	1.4443E-05	432.24513804588844	20.404	0.3622	20.404	20.168	20.53	0					19	12	2	0	0	0	0.15163	1	5379	5379		67.494	12.717	1	242460			5028	6644	2684	2704	5128	5128					0.039257921435250864
ATSSVSALK	9	Unmodified	_ATSSVSALK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENST00000539357.1_1_12:133257669-133263919:-|nuORF;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2452087402344	2	432.245275	862.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.287	1	20.287	19.787	20.787	0								0	0	0	0.0537	1	5638	5638		85.161	17.667	1				5029	6644	2684	2704	5129	5129					0.039257921435250864
ATSSVSALK	9	Unmodified	_ATSSVSALK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENST00000539357.1_1_12:133257669-133263919:-|nuORF;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2453918457031	2	432.245275	862.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.313	1	20.313	19.813	20.813	0								0	0	0	0.30009	1	5649	5649		35.152	3.6222	1				5030	6644	2684	2704	5130	5130					0.039257921435250864
ATSSVSALK	9	Unmodified	_ATSSVSALK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENST00000539357.1_1_12:133257669-133263919:-|nuORF;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.24505615234375	2	432.245275	862.475997	-0.47687	-0.00020612	-0.66841	-0.00028892	-1.1453	-0.00049504	432.2448460438143	20.638	0.51816	20.638	20.28	20.798	0					20	10	3	0	0	0	0.01873	1	6659	6659		124.08	33.303	1	1372600			5031	6644	2684	2704	5131	5131					0.039257921435250864
ATSSVSALK	9	Unmodified	_ATSSVSALK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENST00000539357.1_1_12:133257669-133263919:-|nuORF;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.2452392578125	2	432.245275	862.475997	0.20423	8.8277E-05	-0.30435	-0.00013155	-0.10012	-4.3277E-05	432.2452414487253	20.456	0.31506	20.456	20.234	20.549	0					11	7	2	0	0	0	0.12834	1	5705	5705		72.879	6.45	1	142720			5032	6644	2684	2704	5132	5132					0.039257921435250864
ATSSVSALK	9	Unmodified	_ATSSVSALK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENST00000539357.1_1_12:133257669-133263919:-|nuORF;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.2452087402344	2	432.245275	862.475997	-0.43223	-0.00018683	-0.35024	-0.00015139	-0.78247	-0.00033822	432.24501397770877	20.483	0.43974	20.483	20.22	20.66	0					17	10	2	0	0	0	0.15163	1	5699	5699		67.494	8.7117	1	215430			5033	6644	2684	2704	5133	5133					0.039257921435250864
ATSSVSALK	9	Unmodified	_ATSSVSALK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENST00000539357.1_1_12:133257669-133263919:-|nuORF;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.24493408203125	2	432.245275	862.475997	-0.48142	-0.00020809	-0.070841	-3.0621E-05	-0.55227	-0.00023871	432.2452018124401	20.503	0.36558	20.503	20.394	20.759	0					16	7	3	0	0	0	0.02953	1	6531	6531		109.48	21.782	1	1754700			5034	6644	2684	2704	5134	5134					0.039257921435250864
ATSTGGIVNK	10	Unmodified	_ATSTGGIVNK_					0	0	0		ENSG00000162174|ENST00000415229|ASRGL1;nc|ENSG00000162174|Q7L266-2|ASRGL1;ENST00000534183.5_1_11:62105600-62156860:+|nuORF	ENSG00000162174|ENST00000415229|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2608337402344	2	474.261456	946.50836	-0.26094	-0.00012376	-0.42697	-0.00020249	-0.68791	-0.00032625	474.2612225168424	18.158	0.38712	18.158	18.061	18.448	0					37	15	5	0	0	0	0.04084	1	4460	4460		112.41	51.439	1	7277800			5035	5445	2685	2705	5135	5135					0.032965795465202063
ATSTGGIVNK	10	Unmodified	_ATSTGGIVNK_					0	0	0		ENSG00000162174|ENST00000415229|ASRGL1;nc|ENSG00000162174|Q7L266-2|ASRGL1;ENST00000534183.5_1_11:62105600-62156860:+|nuORF	ENSG00000162174|ENST00000415229|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2614440917969	2	474.261456	946.50836	-0.48256	-0.00022886	-0.20718	-9.8256E-05	-0.68974	-0.00032711	474.2614898405932	18.469	0.43349	18.469	18.369	18.803	0					37	10	6	0	0	0	0.0045666	1	5397	5397		167.23	48.486	1	40119000			5036	5445	2685	2705	5136	5136					0.032965795465202063
ATSTGGIVNK	10	Unmodified	_ATSTGGIVNK_					0	0	0		ENSG00000162174|ENST00000415229|ASRGL1;nc|ENSG00000162174|Q7L266-2|ASRGL1;ENST00000534183.5_1_11:62105600-62156860:+|nuORF	ENSG00000162174|ENST00000415229|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2611389160156	2	474.261456	946.50836	-0.592	-0.00028076	0.020033	9.5007E-06	-0.57197	-0.00027126	474.2614584864968	18.176	0.24932	18.176	18.082	18.332	0					26	9	4	0	0	0	0.021567	1	4685	4685		124.08	30.937	1	3912700			5037	5445	2685	2705	5137	5137					0.032965795465202063
ATSTGGIVNK	10	Unmodified	_ATSTGGIVNK_					0	0	0		ENSG00000162174|ENST00000415229|ASRGL1;nc|ENSG00000162174|Q7L266-2|ASRGL1;ENST00000534183.5_1_11:62105600-62156860:+|nuORF	ENSG00000162174|ENST00000415229|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.26129150390625	2	474.261456	946.50836	-0.56803	-0.0002694	0.15146	7.183E-05	-0.41658	-0.00019757	474.26156333142217	18.434	0.41822	18.434	18.327	18.745	0					26	8	5	0	0	0	1.7855E-06	1	5643	5643		204.62	64.654	1	17111000			5038	5445	2685	2705	5138	5138					0.032965795465202063
ATSTSSFKK	9	Unmodified	_ATSTSSFKK_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7557067871094	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.691	1	14.691	14.191	15.191	0								0	0	0	0.14881	1	3160	3160		60.118	7.1816	1				5039	2781	2686	2706	5139	5139					0.01793177172248761
ATSVAAARK	9	Unmodified	_ATSVAAARK_					0	0	0		nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;chr20:45814470-45815854|444|10.08|0.42|4.6|+|ENST00000405520|UBE2C,UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.75860595703125	2	437.758884	873.503215	-0.27945	-0.00012233	-0.26487	-0.00011595	-0.54432	-0.00023828	437.75866339618943	13.099	0.057364	13.099	13.08	13.137	0					5	3	2	0	0	0	0.17854	1	2553	2553		64.207	16.55	1	83016			5040	11653	2687	2707	5140	5140					0.061403204745602125
ATSVAAARK	9	Unmodified	_ATSVAAARK_					0	0	0		nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;chr20:45814470-45815854|444|10.08|0.42|4.6|+|ENST00000405520|UBE2C,UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7585144042969	2	437.758884	873.503215	-0.39181	-0.00017152	-0.18659	-8.168E-05	-0.5784	-0.0002532	437.75877805293464	13.414	0.29467	13.414	13.33	13.624	0					15	8	4	0	0	0	0.016683	1	3035	3035		127.46	22.715	1	1465400			5041	11653	2687	2707	5141	5141					0.061403204745602125
ATSVAAARK	9	Unmodified	_ATSVAAARK_					0	0	0		nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;chr20:45814470-45815854|444|10.08|0.42|4.6|+|ENST00000405520|UBE2C,UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7590637207031	2	437.758884	873.503215	-1.0299	-0.00045083	1.3104	0.00057365	0.28056	0.00012282	437.7594616680946	13.178	0.059324	13.178	13.143	13.202	0					7	3	3	0	0	0	0.19605	1	2687	2687		62.107	16.135	1	192060			5042	11653	2687	2707	5142	5142					0.061403204745602125
ATSVAAARK	9	Unmodified	_ATSVAAARK_					0	0	0		nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;chr20:45814470-45815854|444|10.08|0.42|4.6|+|ENST00000405520|UBE2C,UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7586669921875	2	437.758884	873.503215	0.27679	0.00012117	-0.68664	-0.00030058	-0.40985	-0.00017941	437.758550962883	13.415	0.27772	13.415	13.313	13.591	0					11	6	3	0	0	0	0.078509	1	3247	3247		85.161	23.053	1	1260000			5043	11653	2687	2707	5143	5143					0.061403204745602125
ATSVAAARK	9	Unmodified	_ATSVAAARK_					0	0	0		nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;chr20:45814470-45815854|444|10.08|0.42|4.6|+|ENST00000405520|UBE2C,UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7588195800781	2	437.758884	873.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.4	1	13.4	12.9	13.9	0								0	0	0	0.29774	1	3100	3100		35.618	3.6634	1				5044	11653	2687	2707	5144	5144					0.061403204745602125
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.29461669921875	2	466.294768	930.574983	0.06093	2.8411E-05	-0.55268	-0.00025771	-0.49175	-0.0002293	466.2944665945729	32.558	0.36909	32.558	32.447	32.816	0					43	15	4	0	0	0	0.078509	1	10512	10512		85.161	24.189	1	1749400			5045	7422	2688	2708	5145	5145					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.294677734375	2	466.294768	930.574983	0.43388	0.00020232	-1.1142	-0.00051956	-0.68035	-0.00031724	466.29416624112883	32.868	0.31986	32.868	32.748	33.068	0					30	8	6	0	0	0	0.0097668	1	12098	12098		141.52	34.513	1	9175700			5046	7422	2688	2708	5146	5146					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2943420410156	2	466.294768	930.574983	-0.92068	-0.00042931	0.3401	0.00015859	-0.58058	-0.00027072	466.29486241057606	32.636	0.3646	32.636	32.519	32.883	0					39	14	4	0	0	0	0.032383	1	10887	10887		106.68	29.909	1	1797900			5047	7422	2688	2708	5147	5147					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.79656982421875	2	466.294768	930.574983	-0.13476	-6.2838E-05	-0.43343	-0.0002021	-0.56819	-0.00026494	466.29443265531404	32.808	0.39125	32.808	32.688	33.079	0					27	9	4	0	0	0	0.070005	1	12478	12478		88.177	11.403	1	3242100			5048	7422	2688	2708	5148	5148					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2945251464844	2	466.294768	930.574983	0.66321	0.00030925	-1.2217	-0.00056969	-0.55853	-0.00026044	466.2941133467192	32.796	0.6304	32.796	32.679	33.309	0					36	15	5	0	0	0	0.00324	1	12486	12486		167.23	60.221	1	8952500			5049	7422	2688	2708	5149	5149					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2940673828125	2	466.294768	930.574983	-0.18108	-8.4437E-05	-0.44337	-0.00020674	-0.62445	-0.00029118	466.2944877131125	32.592	0.35411	32.592	32.484	32.838	0					29	10	4	0	0	0	0.3269	1	11325	11325		47.96	8.7067	1	928290			5050	7422	2688	2708	5150	5150					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.29443359375	2	466.294768	930.574983	-0.62919	-0.00029339	0.05759	2.6854E-05	-0.5716	-0.00026654	466.2946779824604	32.585	0.46991	32.585	32.504	32.974	0					31	13	4	0	0	0	0.0097668	1	11338	11338		141.52	42.145	1	1580300			5051	7422	2688	2708	5151	5151					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.29443359375	2	466.294768	930.574983	-0.49928	-0.00023281	0.036963	1.7236E-05	-0.46232	-0.00021558	466.2946913262946	32.831	0.49768	32.831	32.623	33.121	0					27	10	5	0	0	0	5.4201E-05	1	12378	12378		195.06	64.032	1	6339900			5052	7422	2688	2708	5152	5152					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.29443359375	2	466.294768	930.574983	0.65167	0.00030387	-1.336	-0.00062298	-0.68435	-0.00031911	466.2941105064954	32.814	0.31513	32.814	32.657	32.972	0					23	6	5	0	0	0	0.0059092	1	12391	12391		154.12	47.111	1	15561000			5053	7422	2688	2708	5153	5153					0.10691815108430092
ATSVLNVL	8	Unmodified	_ATSVLNVL_					0	0	0			REV__SLCO3A1|p.A424V|1|0.04|ENSG00000176463|chr15:92126157-92126157|C/T|missense_variant	REV__SLCO3A1|p.A424V|1|0.04|ENSG00000176463|chr15:92126157-92126157|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	408.74530029296875	2	408.744911	815.475269	0.63017	0.00025758	-0.287	-0.00011731	0.34317	0.00014027	408.7447935850209	38.932	0.23154	38.932	38.841	39.072	0					21	13	2	0	0	0	0.25001	1	12661	12661		101.21	3.7389	1	72057	+		5054	16655	2689	2709	5154	5154					0.06014997494492036
ATSVLTSGLV	10	Unmodified	_ATSVLTSGLV_					0	0	0		MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.27410888671875	2	474.274032	946.533512	0.67476	0.00032002	-0.31224	-0.00014809	0.36253	0.00017194	474.2742101422113	32.632	0.10088	32.632	32.555	32.656	0					4	2	2	0	0	0	0.57532	1	11996	11996		37.159	1.5408	1	31819			5055	6840	2690	2710	5155	5155					0.05810634349097654
ATSVSPAL	8	Unmodified	_ATSVSPAL_					0	0	0			REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2096252441406	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.472	1	37.472	36.972	37.972	0								0	0	0	1.7419	1	14655	14655		37.028	0	1		+		5056	18167	2691	2711	5156	5156					0.019344490519983992
ATSVVSFVR	9	Unmodified	_ATSVVSFVR_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2739562988281	2	483.274367	964.53418	0.59805	0.00028902	-3.0477	-0.0014729	-2.4496	-0.0011838	483.2722996131072	34.753	0.35331	34.753	34.652	35.005	0					18	9	4	0	0	0	0.026538	1	12976	12976		112.41	32.698	1	349080			5057	5500	2692	2712	5157	5157					0.050494737888243435
ATSVVSFVR	9	Unmodified	_ATSVVSFVR_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.274658203125	2	483.274367	964.53418	-1.2801	-0.00061866	0.17156	8.2912E-05	-1.1086	-0.00053575	483.27470117276613	34.547	0.16734	34.547	34.473	34.64	0					10	7	2	0	0	0	0.47473	1	11652	11652		35.152	3.1972	1	89101			5058	5500	2692	2712	5158	5158					0.050494737888243435
ATSVVSFVR	9	Unmodified	_ATSVVSFVR_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2738952636719	2	483.274367	964.53418	0.67951	0.00032839	-1.5406	-0.00074452	-0.86107	-0.00041613	483.2736823371619	34.732	0.25083	34.732	34.648	34.899	0					13	7	2	0	0	0	0.037924	1	13434	13434		101.25	48.316	1	391820			5059	5500	2692	2712	5159	5159					0.050494737888243435
ATSVVSFVR	9	Unmodified	_ATSVVSFVR_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2742004394531	2	483.274367	964.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.522	1	34.522	34.022	35.022	0								0	0	0	0.26578	1	12225	12225		41.427	0.64845	1				5060	5500	2692	2712	5160	5160					0.050494737888243435
ATSVVSFVR	9	Unmodified	_ATSVVSFVR_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.27386474609375	2	483.274367	964.53418	0.88132	0.00042592	-1.9501	-0.00094244	-1.0688	-0.00051652	483.2735506440047	34.726	0.65696	34.726	34.572	35.229	0					14	13	2	0	0	0	0.063171	1	13353	13353		90.601	37.249	1	551100			5061	5500	2692	2712	5161	5161					0.050494737888243435
ATSVYLVQK	9	Unmodified	_ATSVYLVQK_					0	0	0		DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant;DIS3L2|p.L768Pfs*56|1|0.27|ENSG00000144535|chr2:232334638-232334639|-/C|frameshift_variant;ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233103253-233124568:+|nuORF;ENST00000445090.5_1_2:233028172-233195406:+|nuORF	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7899475097656	2	504.78985	1007.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.078	1	28.078	27.578	28.578	0								0	0	0	0.00016232	1	10130	10130		132.76	36.724	1				5062	793	2693	2713	5162	5162					0.06166627103038991
ATSWQSVLVK	10	Unmodified	_ATSWQSVLVK_					0	0	0		PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant;PTPRQ|p.Y1402Lfs*5|1|0.3|ENSG00000139304|chr12:80549654-80549654|A/-|frameshift_variant;PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant;PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant;ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.544189453125	3	373.544996	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.628	1	48.628	48.128	49.128	0								0	0	0	0.38879	1	18390	18390		33.922	4.7516	1				5063	4319	2694	2714	5163	5163					0.05905701023107213
ATTAIAIHR	9	Unmodified	_ATTAIAIHR_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2799377441406	2	477.279983	952.545414	-0.10973	-5.237E-05	-0.58228	-0.00027791	-0.69201	-0.00033028	477.27966487365035	21.271	0.15348	21.271	21.198	21.351	0					7	4	2	0	0	0	0.13267	1	5843	5843		71.877	31.305	1	84772			5064	10308	2695	2715	5164	5164					0.06724295882952447
ATTAIAIHR	9	Unmodified	_ATTAIAIHR_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.27972412109375	2	477.279983	952.545414	-0.3308	-0.00015789	-0.13241	-6.3197E-05	-0.46321	-0.00022108	477.27987543525705	21.604	0.1913	21.604	21.504	21.696	0					13	4	4	0	0	0	0.0406	1	6900	6900		98.629	29.843	1	1146700			5065	10308	2695	2715	5165	5165					0.06724295882952447
ATTAIAIHR	9	Unmodified	_ATTAIAIHR_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.280029296875	2	477.279983	952.545414	-0.37049	-0.00017683	-0.1455	-6.9442E-05	-0.51599	-0.00024627	477.28010674668695	21.312	0.14314	21.312	21.243	21.386	0					7	4	2	0	0	0	0.0406	1	6089	6089		98.629	52.677	1	195920			5066	10308	2695	2715	5166	5166					0.06724295882952447
ATTAIAIHR	9	Unmodified	_ATTAIAIHR_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2798156738281	2	477.279983	952.545414	-0.40751	-0.0001945	0.2275	0.00010858	-0.18001	-8.5916E-05	477.28006942508176	21.5	0.21829	21.5	21.39	21.608	0					10	4	3	0	0	0	0.0025305	1	7148	7148		171.38	110.41	1	1261100			5067	10308	2695	2715	5167	5167					0.06724295882952447
ATTALVPPIP	10	Unmodified	_ATTALVPPIP_					0	0	0			REV__MUC5B|p.T3977A|1|0.04|ENSG00000117983|chr11:1248809-1248809|A/G|missense_variant	REV__MUC5B|p.T3977A|1|0.04|ENSG00000117983|chr11:1248809-1248809|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2944641113281	2	490.294768	978.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.075	1	35.075	34.575	35.575	0								0	0	0	0.31878	1	13123	13123		47.916	15.961	1		+		5068	20902	2696	2716	5168	5168					0.08483815108411363
ATTEVQRK	8	Unmodified	_ATTEVQRK_					0	0	0		ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7611999511719	2	466.761623	931.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.197	1	12.197	11.697	12.697	0								0	0	0	1.7419	1	2685	2685		50.025	0.58299	1				5069	6623	2697	2717	5169	5169					0.040199992663815465
ATTEYVQKK	9	Unmodified	_ATTEYVQKK_					0	0	0		ENSG00000130957|ENST00000375337|FBP2	ENSG00000130957|ENST00000375337|FBP2	ENSG00000130957|ENST00000375337|FBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2909545898438	2	534.290214	1066.56587	0.52427	0.00028011	-0.90686	-0.00048453	-0.3826	-0.00020442	534.2906092527797	15.279	0.075598	15.279	15.232	15.307	0					6	2	3	0	0	0	0.22837	1	3302	3302		58.23	8.6939	1	85331			5070	3686	2698	2718	5170	5170					0.03525421752101465
ATTEYVQKK	9	Unmodified	_ATTEYVQKK_					0	0	0		ENSG00000130957|ENST00000375337|FBP2	ENSG00000130957|ENST00000375337|FBP2	ENSG00000130957|ENST00000375337|FBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2907104492188	2	534.290214	1066.56587	0.19283	0.00010303	0.37936	0.00020269	0.57219	0.00030572	534.2903261736864	15.309	0.085958	15.309	15.262	15.348	0					4	2	2	0	0	0	0.25716	1	3470	3470		54.776	7.119	1	99906			5071	3686	2698	2718	5171	5171					0.03525421752101465
ATTEYVQKK	9	Unmodified	_ATTEYVQKK_					0	0	0		ENSG00000130957|ENST00000375337|FBP2	ENSG00000130957|ENST00000375337|FBP2	ENSG00000130957|ENST00000375337|FBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2901000976562	2	534.290214	1066.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.585	1	15.585	15.085	16.085	0								0	0	0	0.063706	1	4290	4290		82.241	13.756	1				5072	3686	2698	2718	5172	5172					0.03525421752101465
ATTGELAANK	10	Unmodified	_ATTGELAANK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2590637207031	2	488.258914	974.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.277	1	18.277	17.777	18.777	0								0	0	0	0.3185	1	4525	4525		47.96	3.8427	1				5073	6760;10100	2699	2719	5173	5173					0.015002756838953246
ATTGELAANK	10	Unmodified	_ATTGELAANK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2586364746094	2	488.258914	974.503274	0.79545	0.00038839	-1.243	-0.00060693	-0.44759	-0.00021854	488.25821899679306	18.514	0.16625	18.514	18.454	18.621	0					5	3	2	0	0	0	0.2538	1	5570	5570		72.879	16.445	1	605620			5074	6760;10100	2699	2719	5174	5174					0.015002756838953246
ATTGKILEK	9	Unmodified	_ATTGKILEK_					0	0	0		ENST00000480855.1_1_2:172299988-172306494:+|nuORF;ENST00000468592.5_1_2:172300063-172325523:+|nuORF;ENSG00000115827|ENST00000375255|DCAF17	ENST00000480855.1_1_2:172299988-172306494:+|nuORF	ENST00000480855.1_1_2:172299988-172306494:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7896423339844	2	480.78985	959.565146	-1.3675	-0.0006575	1.2392	0.0005958	-0.12834	-6.1707E-05	480.7903208622265	18.069	0.11195	18.069	17.989	18.101	0					7	3	3	0	0	0	0.037712	1	4663	4663		101.46	16.299	1	371300			5075	2938	2700	2720	5175	5175					0.0837462710304635
ATTGKILEK	9	Unmodified	_ATTGKILEK_					0	0	0		ENST00000480855.1_1_2:172299988-172306494:+|nuORF;ENST00000468592.5_1_2:172300063-172325523:+|nuORF;ENSG00000115827|ENST00000375255|DCAF17	ENST00000480855.1_1_2:172299988-172306494:+|nuORF	ENST00000480855.1_1_2:172299988-172306494:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7896423339844	2	480.78985	959.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.376	1	18.376	17.876	18.876	0								0	0	0	0.1347	1	5629	5629		63.426	6.9927	1				5076	2938	2700	2720	5176	5176					0.0837462710304635
ATTGKILEK	9	Unmodified	_ATTGKILEK_					0	0	0		ENST00000480855.1_1_2:172299988-172306494:+|nuORF;ENST00000468592.5_1_2:172300063-172325523:+|nuORF;ENSG00000115827|ENST00000375255|DCAF17	ENST00000480855.1_1_2:172299988-172306494:+|nuORF	ENST00000480855.1_1_2:172299988-172306494:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.78961181640625	2	480.78985	959.565146	0.92225	0.00044341	-1.4743	-0.00070885	-0.55209	-0.00026544	480.78902227994126	18.313	0.31563	18.313	18.206	18.522	0					19	6	4	0	0	0	0.067603	1	5470	5470		89.029	13.986	1	1950100			5077	2938	2700	2720	5177	5177					0.0837462710304635
ATTHEIMGPK	10	Unmodified	_ATTHEIMGPK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7766723632812	2	542.776416	1083.53828	2.0415	0.0011081	-1.7414	-0.00094518	0.3001	0.00016289	542.7755114272716	19.272	0.21668	19.272	19.164	19.38	0					10	4	3	0	0	0	0.27065	1	6077	6077		70.816	22.857	1	1135900			5078	1519	2701	2721	5178	5178					-0.00014804779789301392
ATTHEIMGPK	10	Unmodified	_ATTHEIMGPK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7767333984375	2	542.776416	1083.53828	1.0695	0.00058048	0.36557	0.00019842	1.435	0.00077891	542.776456068988	19.112	0.10259	19.112	19.061	19.164	0					4	2	2	0	0	0	0.58189	1	5139	5139		36.447	4.4919	1	81977			5079	1519	2701	2721	5179	5179					-0.00014804779789301392
ATTKPPPAK	9	Unmodified	_ATTKPPPAK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.77099609375	2	455.77146	909.528367	-0.59258	-0.00027008	0.1737	7.917E-05	-0.41888	-0.00019091	455.77149416684074	12.48	0.94195	12.48	12.175	13.117	0					50	29	3	0	0	0	0.22837	1	2623	2623		58.23	4.8785	1	336260			5080	5871	2702	2722	5180	5180					0.06998375277123614
ATTKPPPAK	9	Unmodified	_ATTKPPPAK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.77130126953125	2	455.77146	909.528367	-0.5428	-0.00024739	0.18201	8.2953E-05	-0.3608	-0.00016444	455.77154611225194	12.507	1.1495	12.507	12.084	13.234	0					49	27	4	0	0	0	0.12834	1	2822	2822		72.879	5.3856	1	931660			5081	5871	2702	2722	5181	5181					0.06998375277123614
ATTKPPPAKK	10	Unmodified	_ATTKPPPAKK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.881591796875	3	346.88172	1037.62333	0.51636	0.00017912	-0.6419	-0.00022266	-0.12554	-4.3548E-05	346.8814782759103	11.54	0.23198	11.54	11.418	11.65	0					10	6	2	0	0	0	0.48965	1	2393	2393		46.457	20.393	1	154960			5082	5871	2703	2723	5182	5182					0.10602308748298128
ATTKSTVNK	9	Unmodified	_ATTKSTVNK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7705078125	2	475.269281	948.52401	-0.11987	-5.6969E-05	-0.059741	-2.8393E-05	-0.17961	-8.5362E-05	475.26929380752586	11.095	0.068892	11.095	11.048	11.116	0					4	2	2	0	0	0	0.095583	1	2193	2193		80.455	80.455	1	49613			5083	2863	2704	2724	5183	5183					0.047688660635685665
ATTKYAQL	8	Unmodified	_ATTKYAQL_					0	0	0		ENST00000453514.5_1_5:78908461-78908533:+|nuORF	ENST00000453514.5_1_5:78908461-78908533:+|nuORF	ENST00000453514.5_1_5:78908461-78908533:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2469482421875	2	448.247818	894.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.201	1	22.201	21.701	22.701	0								0	0	0	1.7419	1	6572	6572		51.335	7.2187	1				5084	9669	2705	2725	5184	5184					0.029620960061379265
ATTLKACTLA	10	Carbamidomethyl (C)	_ATTLKAC(Carbamidomethyl (C))TLA_	ATTLKAC(1)TLA		ATTLKAC(53)TLA		0	1	0			REV__ENSG00000126749|ENST00000599672|EMG1	REV__ENSG00000126749|ENST00000599672|EMG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.5268249511719	3	350.526837	1048.55868	0.7002	0.00024544	-0.7259	-0.00025445	-0.025698	-9.0079E-06	350.52667643785213	18.969	0.14955	18.969	18.865	19.015	0					12	4	4	0	0	0	0.4287	1	5633	5633		53.089	13.031	1	1416800	+		5085	14473	2706	2726	5185	5185	540				0.03634365880020596
ATTLKACTLA	10	Carbamidomethyl (C)	_ATTLKAC(Carbamidomethyl (C))TLA_	ATTLKAC(1)TLA		ATTLKAC(43)TLA		0	1	0			REV__ENSG00000126749|ENST00000599672|EMG1	REV__ENSG00000126749|ENST00000599672|EMG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.5270080566406	3	350.526837	1048.55868	-0.075474	-2.6456E-05	-0.096286	-3.3751E-05	-0.17176	-6.0206E-05	350.5268793728878	18.722	0.086905	18.722	18.643	18.73	0					6	2	3	0	0	0	0.52275	1	4936	4936		42.864	12.547	1	183110	+		5086	14473	2706	2726	5186	5186	540				0.03634365880020596
ATTLKNRPL	9	Unmodified	_ATTLKNRPL_					0	0	0		nc|ENSG00000169129|Q8N4X5-3|AFAP1L2;ENST00000491814.1_1_10:116056685-116061337:-|nuORF;nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-3|AFAP1L2	nc|ENSG00000169129|Q8N4X5-3|AFAP1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.5411682128906	3	338.541586	1012.60293	0.23055	7.8051E-05	-0.36545	-0.00012372	-0.1349	-4.5669E-05	338.5414681325562	20.554	0.33418	20.554	20.335	20.669	0					26	9	4	0	0	0	0.50858	1	5473	5473		31.53	5.9558	1	1351000			5087	6149	2707	2727	5187	5187					0.0971313808852301
ATTLKNRPL	9	Unmodified	_ATTLKNRPL_					0	0	0		nc|ENSG00000169129|Q8N4X5-3|AFAP1L2;ENST00000491814.1_1_10:116056685-116061337:-|nuORF;nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-3|AFAP1L2	nc|ENSG00000169129|Q8N4X5-3|AFAP1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.30853271484375	2	507.308741	1012.60293	-0.54308	-0.00027551	0.33487	0.00016988	-0.20821	-0.00010563	507.3088550750357	20.582	0.42792	20.582	20.386	20.814	0					33	13	4	0	0	0	0.085655	1	5724	5724		76.774	7.1465	1	1220200			5088	6149	2707	2727	5188	5188					0.0971313808852301
ATTLLFSAIR	10	Unmodified	_ATTLLFSAIR_					0	0	0			REV__ENST00000396081.5_1_7:35734046-35734373:-|nuORF	REV__ENST00000396081.5_1_7:35734046-35734373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.88525390625	3	364.885241	1091.63389	1.0534	0.00038438	-0.70638	-0.00025775	0.34704	0.00012663	364.88497707612026	26.392	0.22058	26.392	26.282	26.502	0					11	4	3	0	0	0	0.61238	1	9334	9334		32.751	7.1765	1	746520	+		5089	18892	2708	2728	5189	5189					0.09174291402746348
ATTLLSKG	8	Unmodified	_ATTLLSKG_					0	0	0			REV__TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant	REV__TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.7369384765625	2	395.737086	789.459619	-0.15784	-6.2463E-05	0.98422	0.00038949	0.82638	0.00032703	395.7371492868408	23.038	0.14199	23.038	22.952	23.094	0					5	3	2	0	0	0	0.67394	1	6975	6975		37.159	1.5408	1	60743	+		5090	22232	2709	2729	5190	5190					0.056467109774303026
ATTLPIRNK	9	Unmodified	_ATTLPIRNK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.3083801269531	2	507.308741	1012.60293	-0.089613	-4.5461E-05	0.00021576	1.0945E-07	-0.089397	-4.5352E-05	507.3087585695933	20.555	0.4615	20.555	20.335	20.797	0					43	14	4	0	0	0	0.047855	1	5470	5470		79.713	2.9384	1	2526500			5091	154	2710	2730	5191	5191					0.09713138088511641
ATTLPIRNK	9	Unmodified	_ATTLPIRNK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.3090515136719	2	507.308741	1012.60293	-0.033	-1.6741E-05	0.092622	4.6988E-05	0.059621	3.0246E-05	507.3087153609525	20.888	1.0133	20.888	20.551	21.564	0					50	23	4	0	0	0	0.061298	1	6496	6496		75.043	0	1	14904000			5092	154	2710	2730	5192	5192					0.09713138088511641
ATTLPIRNK	9	Unmodified	_ATTLPIRNK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.3087158203125	2	507.308741	1012.60293	-0.37429	-0.00018988	0.20925	0.00010615	-0.16504	-8.3728E-05	507.30889277859825	20.805	0.76145	20.805	20.546	21.307	0					36	15	3	0	0	0	0.040209	1	6737	6737		82.75	0	1	7652500			5093	154	2710	2730	5193	5193					0.09713138088511641
ATTPELLLK	9	Unmodified	_ATTPELLLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.3000793457031	2	493.30005	984.585547	0.77556	0.00038258	-0.90407	-0.00044598	-0.12851	-6.3394E-05	493.29962633006187	37.007	0.28817	37.007	36.864	37.153	0					22	8	3	0	0	0	0.34452	1	13980	13980		39.253	0	1	346610			5094	7426	2711	2731	5194	5194					0.09263797762866943
ATTPSAVFR	9	Unmodified	_ATTPSAVFR_					0	0	0		ENST00000546572.1_1_12:53702939-53703546:-|nuORF;ENST00000550033.5_1_12:53701834-53703447:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS	ENST00000546572.1_1_12:53702939-53703546:-|nuORF	ENST00000546572.1_1_12:53702939-53703546:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7582092285156	2	475.258717	948.50288	-0.11988	-5.6973E-05	-1.011	-0.00048048	-1.1309	-0.00053745	475.2584967560439	28.337	0.40252	28.337	28.096	28.499	0					15	8	3	0	0	0	0.30951	1	10343	10343		49.442	8.8689	1	218730			5095	1888	2712	2732	5195	5195					0.02656900754709568
ATTQTIMQK	9	Unmodified	_ATTQTIMQK_					0	0	0		ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2708740234375	2	511.270967	1020.52738	-0.12683	-6.4845E-05	0.65954	0.0003372	0.53271	0.00027236	511.2711778375445	20.959	0.16022	20.959	20.868	21.028	0					6	4	2	0	0	0	0.095583	1	5695	5695		80.455	25.678	1	144170			5096	7381	2713	2733	5196	5196					0.017937928459332397
ATTQTIMQK	9	Unmodified	_ATTQTIMQK_					0	0	0		ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2711486816406	2	511.270967	1020.52738	-0.38031	-0.00019444	-0.10854	-5.5492E-05	-0.48884	-0.00024993	511.27123866901616	20.985	0.14848	20.985	20.891	21.04	0					9	4	3	0	0	0	0.02429	1	5950	5950		114.89	16.265	1	240510			5097	7381	2713	2733	5197	5197					0.017937928459332397
ATTQTIMQK	9	Unmodified	_ATTQTIMQK_					0	0	0		ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.27093505859375	2	511.270967	1020.52738	-1.7569	-0.00089826	1.9549	0.0009995	0.19802	0.00010124	511.2719921616619	21.059	0.2337	21.059	20.966	21.2	0					9	5	3	0	0	0	0.13726	1	6048	6048		70.816	24.844	1	313250			5098	7381	2713	2733	5198	5198					0.017937928459332397
ATTQTIMQK	9	Unmodified	_ATTQTIMQK_					0	0	0		ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.27069091796875	2	511.270967	1020.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.195	1	21.195	20.695	21.695	0								0	0	0	0.0011674	1	6860	6860		126.24	26.868	1				5099	7381	2713	2733	5199	5199					0.017937928459332397
ATTRVSLRT	9	Unmodified	_ATTRVSLRT_					0	0	0		ENST00000541815.1_1_12:14407988-14408030:+|nuORF	ENST00000541815.1_1_12:14407988-14408030:+|nuORF	ENST00000541815.1_1_12:14407988-14408030:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.5330810546875	3	335.533091	1003.57744	1.4902	0.00050001	-1.6694	-0.00056014	-0.17922	-6.0133E-05	335.53254113881246	22.014	0.21214	22.014	21.907	22.119	0					12	4	3	0	0	0	0.61124	1	7401	7401		19.104	1.6355	1	2479600			5100	10547	2714	2734	5200	5200					0.07579663566093586
ATTSLSLRR	9	Unmodified	_ATTSLSLRR_					0	0	0		ENST00000465703.5_1_6:31926942-31928873:+|nuORF;ENST00000488648.5_1_6:31926942-31929152:+|nuORF;SKIV2L|p.E816Rfs*3|1|0.37|ENSG00000204351|chr6:31967104-31967104|G/-|frameshift_variant;SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant;ENSG00000204351|ENST00000375394|SKIC2	ENST00000465703.5_1_6:31926942-31928873:+|nuORF	ENST00000465703.5_1_6:31926942-31928873:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7960205078125	2	502.795998	1003.57744	-0.049364	-2.482E-05	0.14009	7.0437E-05	0.090726	4.5617E-05	502.7960390857971	21.798	0.14067	21.798	21.737	21.878	0					9	4	3	0	0	0	0.076532	1	6064	6064		79.713	29.688	1	466060			5101	7695	2715	2735	5201	5201					0.07579663566093586
ATTSLSLRR	9	Unmodified	_ATTSLSLRR_					0	0	0		ENST00000465703.5_1_6:31926942-31928873:+|nuORF;ENST00000488648.5_1_6:31926942-31929152:+|nuORF;SKIV2L|p.E816Rfs*3|1|0.37|ENSG00000204351|chr6:31967104-31967104|G/-|frameshift_variant;SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant;ENSG00000204351|ENST00000375394|SKIC2	ENST00000465703.5_1_6:31926942-31928873:+|nuORF	ENST00000465703.5_1_6:31926942-31928873:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.79608154296875	2	502.795998	1003.57744	-0.067927	-3.4153E-05	-0.058076	-2.9201E-05	-0.126	-6.3354E-05	502.7961038775931	22.127	0.23318	22.127	22.061	22.295	0					14	5	4	0	0	0	0.14578	1	7143	7143		52.937	2.9122	1	2010700			5102	7695	2715	2735	5202	5202					0.07579663566093586
ATTSLSLRR	9	Unmodified	_ATTSLSLRR_					0	0	0		ENST00000465703.5_1_6:31926942-31928873:+|nuORF;ENST00000488648.5_1_6:31926942-31929152:+|nuORF;SKIV2L|p.E816Rfs*3|1|0.37|ENSG00000204351|chr6:31967104-31967104|G/-|frameshift_variant;SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant;ENSG00000204351|ENST00000375394|SKIC2	ENST00000465703.5_1_6:31926942-31928873:+|nuORF	ENST00000465703.5_1_6:31926942-31928873:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7959289550781	2	502.795998	1003.57744	-0.51319	-0.00025803	0.21855	0.00010988	-0.29464	-0.00014815	502.7961900433582	21.997	0.31403	21.997	21.89	22.204	0					15	6	4	0	0	0	0.04067	1	7391	7391		71.877	2.2498	1	2158500			5103	7695	2715	2735	5203	5203					0.07579663566093586
ATTSNFTFSK	10	Unmodified	_ATTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.27294921875	2	552.272021	1102.52949	1.605	0.00088637	0.35705	0.00019719	1.962	0.0010836	552.2720923525183	30	0.29189	30	29.9	30.192	0					10	6	2	0	0	0	0.48255	1	11183	11183		47.228	4.8315	1	487260			5104	5357	2716	2736	5204	5204					-0.0176745514461345
ATTSNTVSK	9	Unmodified	_ATTSNTVSK_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.7384033203125	2	454.737814	907.461075	-0.13155	-5.9821E-05	0.031635	1.4386E-05	-0.099916	-4.5436E-05	454.73776857492624	12.778	0.10416	12.778	12.683	12.787	0					4	2	2	0	0	0	0.46194	1	2948	2948		36.447	2.2742	1	258340			5105	6669	2717	2737	5205	5205					0.0036430027552114552
ATTSNTVSK	9	Unmodified	_ATTSNTVSK_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.7375183105469	2	454.737814	907.461075	0.72124	0.00032797	-1.2913	-0.0005872	-0.57005	-0.00025922	454.7371873790872	12.761	0.48838	12.761	12.671	13.159	0					18	11	3	0	0	0	0.017421	1	2960	2960		126.24	38.546	1	2738200			5106	6669	2717	2737	5206	5206					0.0036430027552114552
ATTSVASLTS	10	Unmodified	_ATTSVASLTS_					0	0	0			REV__nc|ENSG00000178297|Q7Z410|TMPRSS9	REV__nc|ENSG00000178297|Q7Z410|TMPRSS9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2452697753906	2	469.245472	936.476391	-0.52174	-0.00024483	0.41073	0.00019273	-0.11102	-5.2094E-05	469.24574985889	16.996	0.11584	16.996	16.94	17.056	0					4	2	2	0	0	0	0.37692	1	4836	4836		58.782	4.0056	1	136780	+		5107	16731	2718	2738	5207	5207					0.005611670727034834
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.8189697265625	2	516.818607	1031.62266	1.3504	0.00069792	-0.72407	-0.00037421	0.62634	0.00032371	516.8181897641495	33.544	0.18342	33.544	33.46	33.644	0					12	6	3	0	0	0	0.57211	1	10924	10924		37.508	3.3356	1	151160			5108	7571	2719	2739	5208	5208					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.8187255859375	2	516.818607	1031.62266	0.32908	0.00017008	0.14316	7.3989E-05	0.47224	0.00024406	516.8186598013772	33.543	0.2571	33.543	33.454	33.711	0					19	9	3	0	0	0	0.30252	1	10917	10917		66.962	14.025	1	504960			5109	7571	2719	2739	5209	5209					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8187866210938	2	516.818607	1031.62266	1.2689	0.00065578	-0.93295	-0.00048216	0.33594	0.00017362	516.8181944405641	33.845	0.27074	33.845	33.739	34.009	0					21	7	4	0	0	0	0.39647	1	12534	12534		56.632	17.379	1	679200			5110	7571	2719	2739	5210	5210					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8191528320312	2	516.818607	1031.62266	0.041065	2.1223E-05	0.22592	0.00011676	0.26699	0.00013798	516.8186975606532	33.842	0.45624	33.842	33.725	34.181	0					25	12	4	0	0	0	0.27406	1	12539	12539		70.399	12.169	1	2573100			5111	7571	2719	2739	5211	5211					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.8192138671875	2	516.818607	1031.62266	0.001637	8.4603E-07	0.70873	0.00036629	0.71037	0.00036713	516.8189593439809	33.595	0.33183	33.595	33.51	33.842	0					28	12	3	0	0	0	0.073361	1	11292	11292		101.46	37.253	1	814360			5112	7571	2719	2739	5212	5212					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.8187255859375	2	516.818607	1031.62266	1.4952	0.00077276	-1.0932	-0.000565	0.40201	0.00020777	516.8179985559882	33.805	0.29842	33.805	33.713	34.012	0					22	7	4	0	0	0	0.10583	1	12974	12974		94.409	48.437	1	4206200			5113	7571	2719	2739	5213	5213					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.8187866210938	2	516.818607	1031.62266	0.83807	0.00043313	-0.45375	-0.00023451	0.38431	0.00019862	516.8183380461136	33.565	0.27132	33.565	33.451	33.722	0					19	7	4	0	0	0	0.14893	1	11791	11791		86.882	40.909	1	551890			5114	7571	2719	2739	5214	5214					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.818603515625	2	516.818607	1031.62266	1.5402	0.00079598	-1.1355	-0.00058683	0.4047	0.00020916	516.8179461428424	33.774	0.32047	33.774	33.732	34.053	0					19	7	4	0	0	0	0.041183	1	12882	12882		112.3	48.088	1	3738700			5115	7571	2719	2739	5215	5215					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.8193359375	2	516.818607	1031.62266	3.2999	0.0017055	-2.6952	-0.0013929	0.60471	0.00031252	516.8171025248676	33.796	0.32156	33.796	33.667	33.989	0					17	7	3	0	0	0	0.080628	1	12874	12874		99.013	44.237	1	6702400			5116	7571	2719	2739	5216	5216					0.108114693086236
ATTTLGSAL	9	Unmodified	_ATTTLGSAL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.73199462890625	2	417.732	833.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.458	1	27.458	26.958	27.958	0								0	0	0	0.22106	1	8463	8463		47.916	1.9636	1				5117	1370	2720	2740	5217	5217					0.026061032521852212
ATTTPATDTPF	11	Unmodified	_ATTTPATDTPF_					0	0	0			REV__KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant	REV__KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.76904296875	2	561.769311	1121.52407	1.7891	0.001005	-1.1773	-0.0006614	0.61173	0.00034365	561.7687962917906	36.692	0.15871	36.692	36.636	36.795	0					6	4	2	0	0	0	0.65907	1	13880	13880		31.53	1.2121	1	109530	+		5118	14661	2721	2741	5218	5218					-0.03183178727113045
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.256103515625	2	462.25584	922.497126	0.11097	5.1297E-05	-0.41205	-0.00019047	-0.30108	-0.00013918	462.2556313545556	15.245	0.19455	15.245	15.169	15.363	0					13	6	3	0	0	0	0.10506	1	3279	3279		78.264	32.292	1	941310			5119	5546	2722	2742	5219	5219					0.03277757452383412
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2556457519531	2	462.25584	922.497126	0.7105	0.00032843	-1.0403	-0.00048091	-0.32984	-0.00015247	462.2552701228633	15.573	0.41948	15.573	15.45	15.87	0					28	10	4	0	0	0	0.0047071	1	4043	4043		159.28	95.069	1	7852600			5120	5546	2722	2742	5220	5220					0.03277757452383412
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2554931640625	2	462.25584	922.497126	-0.79881	-0.00036926	-0.11231	-5.1918E-05	-0.91113	-0.00042117	462.2557265377462	15.275	0.1766	15.275	15.202	15.379	0					15	5	4	0	0	0	0.02953	1	3443	3443		109.48	58.143	1	1672600			5121	5546	2722	2742	5221	5221					0.03277757452383412
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2555236816406	2	462.25584	922.497126	-0.133	-6.1479E-05	-0.4193	-0.00019382	-0.5523	-0.0002553	462.25562743499796	15.309	0.15406	15.309	15.245	15.399	0					10	4	3	0	0	0	0.015496	1	3402	3402		129.42	74.645	1	285040			5122	5546	2722	2742	5222	5222					0.03277757452383412
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2553405761719	2	462.25584	922.497126	-0.24401	-0.00011279	-0.37558	-0.00017362	-0.61959	-0.00028641	462.255632899732	15.308	0.2154	15.308	15.237	15.453	0					13	6	3	0	0	0	0.02429	1	3396	3396		114.89	63.559	1	1294500			5123	5546	2722	2742	5223	5223					0.03277757452383412
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2554626464844	2	462.25584	922.497126	-2.4631	-0.0011386	1.8321	0.00084691	-0.63095	-0.00029166	462.2565815984409	15.3	0.18401	15.3	15.226	15.41	0					12	5	4	0	0	0	0.056004	1	3410	3410		93.143	45.228	1	643310			5124	5546	2722	2742	5224	5224					0.03277757452383412
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2557678222656	2	462.25584	922.497126	-0.46829	-0.00021647	0.20054	9.2701E-05	-0.26775	-0.00012377	462.2558721945261	15.491	0.45079	15.491	15.364	15.815	0					23	9	4	0	0	0	0.012936	1	4088	4088		134.77	75.984	1	3956000			5125	5546	2722	2742	5225	5225					0.03277757452383412
ATTTTVTTK	9	Unmodified	_ATTTTVTTK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.25567626953125	2	462.25584	922.497126	0.7992	0.00036943	-1.2364	-0.00057154	-0.43721	-0.0002021	462.2552237048809	15.489	0.45146	15.489	15.397	15.849	0					22	9	3	0	0	0	0.0076184	1	4104	4104		146.79	82.578	1	12581000			5126	5546	2722	2742	5226	5226					0.03277757452383412
ATVAAGVPV	9	Unmodified	_ATVAAGVPV_					0	0	0			REV__nc|ENSG00000116809|Q13105-3|ZBTB17	REV__nc|ENSG00000116809|Q13105-3|ZBTB17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.7313537597656	2	392.731803	783.449054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.405	1	19.405	18.905	19.905	0								0	0	0	0.24438	1	5263	5263		44.531	2.0566	1		+		5127	14169	2723	2743	5227	5227					0.048667283229860914
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL;JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2689208984375	2	462.269084	922.523616	-0.44457	-0.00020551	0.090904	4.2022E-05	-0.35367	-0.00016349	462.2693220673832	33.98	0.17951	33.98	33.911	34.091	0					13	8	2	0	0	0	0.07136	1	11105	11105		87.696	24.39	1	82046			5128	6954	2724	2744	5228	5228					0.0592549113438281
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL;JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2688293457031	2	462.269084	922.523616	-0.72069	-0.00033315	-0.01128	-5.2142E-06	-0.73197	-0.00033837	462.26915839130066	34.293	0.27828	34.293	34.094	34.372	0					14	7	3	0	0	0	0.0016726	1	12765	12765		176.41	59.507	1	441450			5129	6954	2724	2744	5229	5229					0.0592549113438281
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL;JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.26904296875	2	462.269084	922.523616	-0.80153	-0.00037052	0.51849	0.00023968	-0.28305	-0.00013084	462.26937637821595	34.073	0.12152	34.073	34.003	34.124	0					7	4	2	0	0	0	0.087861	1	11467	11467		82.241	10.945	1	88728			5130	6954	2724	2744	5230	5230					0.0592549113438281
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL;JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.26824951171875	2	462.269084	922.523616	-2.4648	-0.0011394	1.0329	0.00047747	-1.4319	-0.00066193	462.2698427682148	34.042	0.14553	34.042	33.949	34.095	0					7	4	2	0	0	0	0.087861	1	12010	12010		82.241	5.3939	1	63385			5131	6954	2724	2744	5231	5231					0.0592549113438281
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL;JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2686767578125	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.244	1	34.244	33.744	34.744	0								0	0	0	0.012158	1	13106	13106		161.9	55.483	1				5132	6954	2724	2744	5232	5232					0.0592549113438281
ATVAEKTK	8	Unmodified	_ATVAEKTK_					0	0	0		SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant;nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA	SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant	SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.2476806640625	2	424.247818	846.481082	0.33423	0.0001418	-0.57525	-0.00024405	-0.24102	-0.00010225	424.2475449201289	26.165	0.36957	26.165	26.061	26.431	0					27	12	4	0	0	0	0.5535	1	7891	7891		54.776	6.8168	1	709630			5133	4666	2725	2745	5233	5233					0.05170096006145286
ATVAEKTK	8	Unmodified	_ATVAEKTK_					0	0	0		SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant;nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA	SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant	SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.2474670410156	2	424.247818	846.481082	-0.21444	-9.0974E-05	0.0086164	3.6555E-06	-0.20582	-8.7318E-05	424.24765631431967	26.16	0.1396	26.16	26.079	26.219	0					7	5	2	0	0	0	0.74405	1	7917	7917		27.882	2.3082	1	105710			5134	4666	2725	2745	5234	5234					0.05170096006145286
ATVAEKTK	8	Unmodified	_ATVAEKTK_					0	0	0		SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant;nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA	SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant	SNCA|p.G51V|1|0.05|ENSG00000145335|chr4:89828154-89828154|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.2476501464844	2	424.247818	846.481082	0.9512	0.00040354	-1.2196	-0.00051742	-0.26841	-0.00011387	424.2472120472412	26.457	0.53163	26.457	26.326	26.858	0					33	12	4	0	0	0	0.23895	1	9117	9117		134.81	5.3895	1	5798800			5135	4666	2725	2745	5235	5235					0.05170096006145286
ATVAGVHVK	9	Unmodified	_ATVAGVHVK_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.263916015625	2	441.263802	880.513051	-0.28686	-0.00012658	-0.2453	-0.00010824	-0.53217	-0.00023483	441.2637885129535	20.405	0.1552	20.405	20.335	20.49	0					11	5	3	0	0	0	0.0406	1	5448	5448		98.629	39.847	1	327570			5136	7899	2726	2746	5236	5236					0.06801508479941276
ATVAGVHVK	9	Unmodified	_ATVAGVHVK_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.2637939453125	2	441.263802	880.513051	-0.34095	-0.00015045	0.23108	0.00010197	-0.10987	-4.8481E-05	441.2639116583295	20.739	0.20623	20.739	20.642	20.848	0					10	4	3	0	0	0	0.01768	1	6493	6493		125.81	35.444	1	1697300			5137	7899	2726	2746	5237	5237					0.06801508479941276
ATVAGVHVK	9	Unmodified	_ATVAGVHVK_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.2636413574219	2	441.263802	880.513051	0.11544	5.0938E-05	-0.75653	-0.00033383	-0.64109	-0.00028289	441.26355941972554	20.653	0.81172	20.653	20.546	21.357	0					31	16	4	0	0	0	0.0025305	1	6713	6713		171.38	57.973	1	21879000			5138	7899	2726	2746	5238	5238					0.06801508479941276
ATVAKAVEE	9	Unmodified	_ATVAKAVEE_					0	0	0			REV__ENST00000471997.1_1_2:147345807-147346347:+|nuORF	REV__ENST00000471997.1_1_2:147345807-147346347:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.75653076171875	2	459.250557	916.486562	-0.44556	-0.00020462	0.63339	0.00029089	0.18784	8.6265E-05	459.2504995026798	23.739	0.4624	23.739	23.634	24.096	0					27	9	5	0	0	0	0.20551	1	8151	8151		60.972	8.0352	1	6539700	+		5139	19488	2727	2747	5239	5239					0.024977747979505693
ATVASSTQK	9	Unmodified	_ATVASSTQK_					0	0	0		ENSG00000184640|ENST00000427177|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9	ENSG00000184640|ENST00000427177|SEPTIN9	ENSG00000184640|ENST00000427177|SEPTIN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.7401428222656	2	446.740357	891.46616	0.59825	0.00026726	-1.0559	-0.00047171	-0.45763	-0.00020444	446.73984918601394	13.467	0.23188	13.467	13.376	13.608	0					11	5	3	0	0	0	0.0086566	1	3295	3295		143.89	53.517	1	731630			5140	7028	2728	2748	5240	5240					0.01608604138152714
ATVATPVPL	9	Unmodified	_ATVATPVPL_					0	0	0			REV__ENSG00000172689|ENST00000308287|MS4A10	REV__ENSG00000172689|ENST00000308287|MS4A10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7588195800781	2	434.760561	867.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.956	1	48.956	48.456	49.456	0								0	0	0	0.35507	1	17738	17738		24.203	1.1603	1		+		5141	16475	2729	2749	5241	5241					0.06751570528570028
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.8029479980469	2	477.80276	953.590967	0.013553	6.4758E-06	-0.236	-0.00011276	-0.22245	-0.00010629	477.80256603254077	34.487	0.40746	34.487	34.286	34.693	0					46	18	4	0	0	0	0.21754	1	11248	11248		77.318	21.813	1	586430			5142	4137	2730	2750	5242	5242					0.11231521345337114
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.8022766113281	2	477.80276	953.590967	-0.11706	-5.593E-05	-0.37509	-0.00017922	-0.49215	-0.00023515	477.8025359777022	34.738	0.54936	34.738	34.466	35.015	0					34	15	3	0	0	0	0.056886	1	13422	13422		107.01	30.233	1	1367200			5143	4137	2730	2750	5243	5243					0.11231521345337114
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.8030090332031	2	477.80276	953.590967	-0.017169	-8.2033E-06	0.40988	0.00019584	0.39271	0.00018764	477.802939502203	34.523	0.41051	34.523	34.331	34.741	0					27	12	3	0	0	0	0.056886	1	12209	12209		107.01	39.514	1	354090			5144	4137	2730	2750	5244	5244					0.11231521345337114
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.80230712890625	2	477.80276	953.590967	-0.32886	-0.00015713	-0.18161	-8.6776E-05	-0.51047	-0.00024391	477.8026123523313	34.531	0.34398	34.531	34.352	34.696	0					26	10	3	0	0	0	0.36476	1	12174	12174		60.118	14.146	1	582670			5145	4137	2730	2750	5245	5245					0.11231521345337114
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.8024597167969	2	477.80276	953.590967	-0.6469	-0.00030909	0.32809	0.00015676	-0.31881	-0.00015233	477.80284280143246	34.742	0.65451	34.742	34.443	35.097	0					31	13	3	0	0	0	0.033694	1	13307	13307		115.49	57.264	1	3821800			5146	4137	2730	2750	5246	5246					0.11231521345337114
ATVDIVQKK	9	Unmodified	_ATVDIVQKK_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000489499.5_1_1:114442984-114447339:-|nuORF;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;AP4B1|p.C320Afs*21|1|0.35|ENSG00000134262|chr1:113900060-113900060|A/-|frameshift_variant	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.30322265625	2	501.303124	1000.5917	-0.044959	-2.2538E-05	0.022895	1.1477E-05	-0.022064	-1.1061E-05	501.30315878611674	19.898	0.17546	19.898	19.822	19.997	0					8	5	2	0	0	0	0.19605	1	5225	5225		62.107	3.8775	1	425260			5147	3906	2731	2751	5247	5247					0.09142315994381534
ATVDIVQKK	9	Unmodified	_ATVDIVQKK_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000489499.5_1_1:114442984-114447339:-|nuORF;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;AP4B1|p.C320Afs*21|1|0.35|ENSG00000134262|chr1:113900060-113900060|A/-|frameshift_variant	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.30328369140625	2	501.303124	1000.5917	-0.10988	-5.5081E-05	0.40882	0.00020494	0.29894	0.00014986	501.30329035867624	20.233	0.24539	20.233	20.142	20.387	0					11	5	3	0	0	0	0.0086566	1	6253	6253		143.89	39.14	1	2443400			5148	3906	2731	2751	5248	5248					0.09142315994381534
ATVDIVQKK	9	Unmodified	_ATVDIVQKK_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000489499.5_1_1:114442984-114447339:-|nuORF;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;AP4B1|p.C320Afs*21|1|0.35|ENSG00000134262|chr1:113900060-113900060|A/-|frameshift_variant	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3023986816406	2	501.303124	1000.5917	-1.0338	-0.00051827	0.31521	0.00015801	-0.71863	-0.00036025	501.3032253204124	19.939	0.14446	19.939	19.86	20.004	0					10	4	3	0	0	0	0.048471	1	5479	5479		95.815	33.708	1	329890			5149	3906	2731	2751	5249	5249					0.09142315994381534
ATVDIVQKK	9	Unmodified	_ATVDIVQKK_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000489499.5_1_1:114442984-114447339:-|nuORF;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;AP4B1|p.C320Afs*21|1|0.35|ENSG00000134262|chr1:113900060-113900060|A/-|frameshift_variant	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.30291748046875	2	501.303124	1000.5917	-0.57487	-0.00028819	0.17138	8.5914E-05	-0.40349	-0.00020227	501.3031296746701	20.154	0.2175	20.154	20.045	20.263	0					12	4	4	0	0	0	0.0071053	1	6474	6474		148.99	38.867	1	2179100			5150	3906	2731	2751	5250	5250					0.09142315994381534
ATVDIVQKK	9	Unmodified	_ATVDIVQKK_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000489499.5_1_1:114442984-114447339:-|nuORF;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;AP4B1|p.C320Afs*21|1|0.35|ENSG00000134262|chr1:113900060-113900060|A/-|frameshift_variant	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.537841796875	3	334.537842	1000.5917	-0.010935	-3.6582E-06	0.028034	9.3783E-06	0.017099	5.7201E-06	334.53785300699775	20.15	0.21622	20.15	20.044	20.26	0					12	4	4	0	0	0	0.59802	1	6366	6366		36.447	10.873	1	613340			5151	3906	2731	2751	5251	5251					0.09142315994381534
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.759765625	2	482.760235	963.505917	0.043435	2.0969E-05	-0.95058	-0.0004589	-0.90715	-0.00043793	482.759900390038	16.197	0.29359	16.197	16.128	16.422	0					38	13	4	0	0	0	0.0047071	1	3640	3640		159.28	85.021	1	1299700			5152	6476	2732	2752	5252	5252					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7599792480469	2	482.760235	963.505917	0.58032	0.00028016	-1.5357	-0.00074139	-0.95541	-0.00046123	482.75968304102906	16.496	0.99515	16.496	16.362	17.357	0					55	24	4	0	0	0	0.00022968	1	4472	4472		190.62	94.432	1	15213000			5153	6476	2732	2752	5253	5253					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.76031494140625	2	482.760235	963.505917	-1.2965	-0.00062588	1.7439	0.0008419	0.44746	0.00021601	482.7612433393507	16.201	0.17452	16.201	16.13	16.304	0					14	6	3	0	0	0	0.095583	1	3833	3833		80.455	25.678	1	190460			5154	6476	2732	2752	5254	5254					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7599792480469	2	482.760235	963.505917	-0.10081	-4.8669E-05	-0.82072	-0.00039621	-0.92154	-0.00044488	482.75991796010766	16.439	0.50419	16.439	16.331	16.835	0					17	10	4	0	0	0	0.0015666	2	4686	4686;4734		177.3	113.1	1	2171900			5155	6476	2732	2752	5255;5256	5255					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.760009765625	2	482.760235	963.505917	0.68469	0.00033054	-1.317	-0.00063577	-0.63226	-0.00030523	482.759724250746	16.422	0.36623	16.422	16.263	16.63	0					16	7	3	0	0	0	0.0037134	1	4701	4701		164.46	82.215	1	2362400			5156	6476	2732	2752	5257	5257					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7600402832031	2	482.760235	963.505917	0.19196	9.267E-05	-0.67964	-0.0003281	-0.48768	-0.00023543	482.7600144002034	16.249	0.26429	16.249	16.166	16.43	0					16	7	3	0	0	0	0.0043467	1	3802	3802		160.82	75.906	1	850710			5157	6476	2732	2752	5258	5258					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.75982666015625	2	482.760235	963.505917	-0.27771	-0.00013407	-0.5471	-0.00026412	-0.82482	-0.00039819	482.7600794771099	16.232	0.2966	16.232	16.154	16.451	0					18	8	3	0	0	0	0.0063888	1	3797	3797		152.06	67.145	1	1039700			5158	6476	2732	2752	5259	5259					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.75982666015625	2	482.760235	963.505917	-0.60632	-0.00029271	-0.43184	-0.00020847	-1.0382	-0.00050118	482.76016074941896	16.409	0.65687	16.409	16.3	16.957	0					34	13	4	0	0	0	0.0063888	1	4546	4546		152.06	67.145	1	7661000			5159	6476	2732	2752	5260	5260					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.17578125	3	322.175915	963.505917	0.008822	2.8422E-06	-0.30082	-9.6918E-05	-0.292	-9.4076E-05	322.17583874087626	16.409	0.16423	16.409	16.351	16.515	0					7	3	3	0	0	0	0.50858	1	4549	4549		46.457	18.375	1	288450			5160	6476	2732	2752	5261	5261					0.022704078172182562
ATVDKTVCK	9	Unmodified	_ATVDKTVCK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7599182128906	2	482.760235	963.505917	0.88804	0.00042871	-1.7196	-0.00083016	-0.83157	-0.00040145	482.7595485389875	16.442	0.80774	16.442	16.333	17.141	0					34	16	5	0	0	0	0.0037134	1	4539	4539		164.46	82.215	1	12182000			5161	6476	2732	2752	5262	5262					0.022704078172182562
ATVDKTVCK	9	Carbamidomethyl (C)	_ATVDKTVC(Carbamidomethyl (C))K_	ATVDKTVC(1)K		ATVDKTVC(99)K		0	1	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2713928222656	2	511.270967	1020.52738	-0.12761	-6.5243E-05	0.61927	0.00031661	0.49166	0.00025137	511.27135845218584	15.305	0.12168	15.305	15.232	15.354	0					7	4	2	0	0	0	0.0406	1	3312	3312		98.629	43.853	1	424280			5162	6476	2732	2753	5263	5263	276				0.017937928459332397
ATVDKTVCK	9	Carbamidomethyl (C)	_ATVDKTVC(Carbamidomethyl (C))K_	ATVDKTVC(1)K		ATVDKTVC(91)K		0	1	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.27099609375	2	511.270967	1020.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.623	1	15.623	15.123	16.123	0								0	0	0	0.040385	1	4074	4074		90.601	24.172	1				5163	6476	2732	2753	5264	5264	276				0.017937928459332397
ATVDKTVCK	9	Carbamidomethyl (C)	_ATVDKTVC(Carbamidomethyl (C))K_	ATVDKTVC(1)K		ATVDKTVC(190)K		0	1	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2709045410156	2	511.270967	1020.52738	-0.3793	-0.00019392	0.4563	0.00023329	0.077007	3.9371E-05	511.27112347908957	15.314	0.22569	15.314	15.233	15.459	0					12	7	3	0	0	0	0.00026591	1	3473	3473		190.26	97.118	1	664440			5164	6476	2732	2753	5265	5265	276				0.017937928459332397
ATVDKTVCK	9	Carbamidomethyl (C)	_ATVDKTVC(Carbamidomethyl (C))K_	ATVDKTVC(1)K		ATVDKTVC(170)K		0	1	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2710266113281	2	511.270967	1020.52738	1.2192	0.00062334	-1.096	-0.00056035	0.1232	6.2991E-05	511.2703535799391	15.575	0.31905	15.575	15.467	15.786	0					9	6	2	0	0	0	0.00324	1	4295	4295		167.23	87.516	1	4621500			5165	6476	2732	2753	5266	5266	276				0.017937928459332397
ATVDKTVCK	9	Carbamidomethyl (C)	_ATVDKTVC(Carbamidomethyl (C))K_	ATVDKTVC(1)K		ATVDKTVC(99)K		0	1	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2709655761719	2	511.270967	1020.52738	0.35692	0.00018248	-0.25558	-0.00013067	0.10134	5.1813E-05	511.2708813398256	15.345	0.082226	15.345	15.304	15.386	0					4	2	2	0	0	0	0.0406	1	3431	3431		98.629	56.233	1	279780			5166	6476	2732	2753	5267	5267	276				0.017937928459332397
ATVDKTVCK	9	Carbamidomethyl (C)	_ATVDKTVC(Carbamidomethyl (C))K_	ATVDKTVC(1)K		ATVDKTVC(130)K		0	1	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2710876464844	2	511.270967	1020.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.351	1	15.351	14.851	15.851	0								0	0	0	0.00014293	1	3424	3424		134.77	69.3	1				5167	6476	2732	2753	5268	5268	276				0.017937928459332397
ATVDKTVCKK	10	Unmodified	_ATVDKTVCKK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.81005859375	2	546.807716	1091.60088	1.133	0.00061954	1.6767	0.00091685	2.8097	0.0015364	546.8081086132031	14.51	0.068644	14.51	14.468	14.537	0					5	3	2	0	0	0	0.62149	1	3089	3089		31.634	17.497	1	40187			5168	6476	2733	2754	5269	5269					0.05874341288404139
ATVDKTVCKK	10	Unmodified	_ATVDKTVCKK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.8091430664062	2	546.807716	1091.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.516	1	14.516	14.016	15.016	0								0	0	0	0.37702	1	3086	3086		37.508	7.1905	1				5169	6476	2733	2754	5270	5270					0.05874341288404139
ATVEKKIK	8	Unmodified	_ATVEKKIK_					0	0	0			REV__tr|U7T3C1|U7T3C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00579PE=4SV=1	REV__tr|U7T3C1|U7T3C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00579PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.79486083984375	2	458.794935	915.575317	0.17409	7.987E-05	0.16277	7.4678E-05	0.33686	0.00015455	458.79492964741553	20.502	0.14898	20.502	20.402	20.551	0					6	3	2	0	0	0	0.24622	1	6362	6362		108.09	3.3409	1	121510	+		5170	22130	2734	2755	5271	5271					0.11415234828280063
ATVETTIAR	9	Unmodified	_ATVETTIAR_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.26898193359375	2	481.269281	960.52401	0.40259	0.00019375	-1.1085	-0.0005335	-0.70594	-0.00033975	481.2687368257775	24.04	0.22918	24.04	23.932	24.161	0					9	5	3	0	0	0	0.0025054	1	8048	8048		171.53	80.931	1	295540			5171	1342	2735	2756	5272	5272					0.04216866063575253
ATVETTIAR	9	Unmodified	_ATVETTIAR_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.26922607421875	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.794	1	23.794	23.294	24.294	0								0	0	0	0.3063	1	7198	7198		33.922	2.3918	1				5172	1342	2735	2756	5273	5273					0.04216866063575253
ATVETTIAR	9	Unmodified	_ATVETTIAR_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2689514160156	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.992	1	23.992	23.492	24.492	0								0	0	0	0.0059645	1	8340	8340		176.44	66.966	1				5173	1342	2735	2756	5274	5274					0.04216866063575253
ATVETTIAR	9	Unmodified	_ATVETTIAR_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2691345214844	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.846	1	23.846	23.346	24.346	0								0	0	0	0.29356	1	7344	7344		36.447	2.9312	1				5174	1342	2735	2756	5275	5275					0.04216866063575253
ATVETTIAR	9	Unmodified	_ATVETTIAR_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.26922607421875	2	481.269281	960.52401	-0.63009	-0.00030324	0.2095	0.00010083	-0.42059	-0.00020242	481.26940742546145	23.951	0.41581	23.951	23.78	24.196	0					14	8	3	0	0	0	0.0080613	1	8203	8203		145.16	60.24	1	474210			5175	1342	2735	2756	5276	5276					0.04216866063575253
ATVGGQII	8	Unmodified	_ATVGGQII_					0	0	0		ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.7252197265625	2	379.723978	757.433404	0.22802	8.6585E-05	3.2434	0.0012316	3.4715	0.0013182	379.72523557651664	37.215	0.27639	37.215	37.127	37.403	0					10	8	2	0	0	0	0.79176	1	14533	14533		21.702	1.2205	1	59695			5176	3677	2736	2757	5277	5277					0.044984418059470954
ATVGKATGFLK	11	Unmodified	_ATVGKATGFLK_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.82666015625	2	546.824224	1091.63389	1.215	0.0006644	1.2153	0.00066456	2.4303	0.001329	546.8251737594035	26.19	0.089233	26.19	26.13	26.219	0					5	3	2	0	0	0	0.26698	1	7921	7921		57.149	3.7973	1	98058			5177	3722	2737	2758	5278	5278					0.09174291402746348
ATVGKATGFLK	11	Unmodified	_ATVGKATGFLK_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.8248901367188	2	546.824224	1091.63389	0.33856	0.00018513	0.23534	0.00012869	0.5739	0.00031382	546.824349849919	26.452	0.16673	26.452	26.343	26.509	0					6	3	2	0	0	0	0.24228	1	9458	9458		68.626	33.474	1	281690			5178	3722	2737	2758	5279	5279					0.09174291402746348
ATVGPFTEKR	10	Unmodified	_ATVGPFTEKR_					0	0	0			REV__MR1|p.P230Qfs*5|1|0.22|ENSG00000153029|chr1:181052314-181052314|C/-|frameshift_variant	REV__MR1|p.P230Qfs*5|1|0.22|ENSG00000153029|chr1:181052314-181052314|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.2059020996094	3	369.204862	1104.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.907	1	16.907	16.407	17.407	0								0	0	0	0.38879	1	4778	4778		33.922	2.3918	1		+		5179	15528	2738	2759	5280	5280					0.04464530363270569
ATVHPGLEL	9	Unmodified	_ATVHPGLEL_					0	0	0		ENST00000472686.1_1_17:74309820-74324990:-|nuORF;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	ENST00000472686.1_1_17:74309820-74324990:-|nuORF	ENST00000472686.1_1_17:74309820-74324990:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.76116943359375	2	468.761092	935.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.426	1	35.426	34.926	35.926	0								0	0	0	0.2591	1	13283	13283		42.396	5.3677	1				5180	5412	2739	2760	5281	5281					0.03729784897461741
ATVIFIVTK	9	Unmodified	_ATVIFIVTK_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.3135070800781	2	496.312961	990.611368	-1.1936	-0.00059241	0.4661	0.00023133	-0.72753	-0.00036108	496.31361461320176	40.934	0.17294	40.934	40.814	40.987	0					6	4	2	0	0	0	0.095583	1	13643	13643		80.455	31.013	1	47944			5181	6285	2740	2761	5282	5282					0.11568692005141656
ATVIFIVTK	9	Unmodified	_ATVIFIVTK_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.3131103515625	2	496.312961	990.611368	-0.034481	-1.7114E-05	0.6997	0.00034727	0.66522	0.00033016	496.3131124913244	41.109	0.16525	41.109	41.02	41.185	0					11	6	2	0	0	0	0.048471	1	16164	16164		95.815	51.438	1	43318			5182	6285	2740	2761	5283	5283					0.11568692005141656
ATVIFIVTK	9	Unmodified	_ATVIFIVTK_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.31298828125	2	496.312961	990.611368	0.7439	0.00036921	-1.2231	-0.00060705	-0.47922	-0.00023784	496.3123600252915	41.081	0.2654	41.081	40.976	41.241	0					19	10	3	0	0	0	0.14578	1	16179	16179		68.846	22.874	1	297900			5183	6285	2740	2761	5284	5284					0.11568692005141656
ATVIFIVTK	9	Unmodified	_ATVIFIVTK_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.3127746582031	2	496.312961	990.611368	-0.68306	-0.00033901	0.76275	0.00037857	0.079698	3.9555E-05	496.31322472750634	41.048	0.3638	41.048	40.892	41.256	0					14	8	3	0	0	0	0.14578	1	16286	16286		68.846	21.189	1	182650			5184	6285	2740	2761	5285	5285					0.11568692005141656
ATVIFVASQK	10	Unmodified	_ATVIFVASQK_					0	0	0		INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant;nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.3112182617188	2	532.310949	1062.60735	0.36169	0.00019253	0.95595	0.00050886	1.3176	0.00070139	532.3113761136418	32.281	0.13667	32.281	32.189	32.325	0					11	6	2	0	0	0	0.15477	1	10411	10411		85.862	27.08	1	63044			5185	4560	2741	2762	5286	5286					0.07854602511406483
ATVIFVASQK	10	Unmodified	_ATVIFVASQK_					0	0	0		INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant;nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.3110961914062	2	532.310949	1062.60735	0.12475	6.6406E-05	0.53178	0.00028307	0.65653	0.00034948	532.3111984914655	32.542	0.21418	32.542	32.454	32.668	0					12	5	3	0	0	0	0.01215	1	11959	11959		134.77	26.678	1	480950			5186	4560	2741	2762	5287	5287					0.07854602511406483
ATVIFVASQK	10	Unmodified	_ATVIFVASQK_					0	0	0		INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant;nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.3116455078125	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.303	1	32.303	31.803	32.803	0								0	0	0	0.16204	1	10770	10770		68.846	26.45	1				5187	4560	2741	2762	5288	5288					0.07854602511406483
ATVIFVASQK	10	Unmodified	_ATVIFVASQK_					0	0	0		INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant;nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.3116455078125	2	532.310949	1062.60735	0.28872	0.00015369	0.4587	0.00024417	0.74742	0.00039786	532.3113658230586	32.484	0.29384	32.484	32.385	32.679	0					14	7	3	0	0	0	0.065778	1	12340	12340		104.01	37.584	1	315120			5188	4560	2741	2762	5289	5289					0.07854602511406483
ATVILRKPEE	10	Unmodified	_ATVILRKPEE_					0	0	0		ENST00000398145.6_2_22:26877999-26878053:-|nuORF	ENST00000398145.6_2_22:26877999-26878053:-|nuORF	ENST00000398145.6_2_22:26877999-26878053:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.8957824707031	3	385.895917	1154.66592	0.85134	0.00032853	-0.99157	-0.00038264	-0.14023	-5.4114E-05	385.89537496988686	31.788	0.21545	31.788	31.696	31.911	0					10	5	3	0	0	0	0.66699	1	11619	11619		26.063	0	1	208470			5189	9229	2742	2763	5290	5290					0.09477659085905543
ATVINPMYI	9	Unmodified	_ATVINPMYI_					0	0	0		tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.18310546875	3	341.184411	1020.5314	-0.025172	-8.5882E-06	-4.4779	-0.0015278	-4.5031	-0.0015364	341.1830965966632	15.554	0.20368	15.554	15.461	15.664	0					8	4	3	0	0	0	0.55379	1	4115	4115		26.693	3.1702	1	400030			5190	22994	2743	2764	5291	5291					0.021958823396403204
ATVISLPAK	9	Unmodified	_ATVISLPAK_					0	0	0		ENST00000477786.5_1_20:50705508-50792496:-|nuORF;nc|ENSG00000020256|Q9NTW7-3|ZFP64;ZFP64|p.D633Lfs*3|1|0.04|ENSG00000020256|chr20:52152295-52152296|-/ATTCAAG|frameshift_variant;nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64	ENST00000477786.5_1_20:50705508-50792496:-|nuORF	ENST00000477786.5_1_20:50705508-50792496:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2814025878906	2	450.28166	898.548768	-0.10134	-4.5632E-05	0.074756	3.3661E-05	-0.026585	-1.1971E-05	450.28159285355605	32.154	0.29833	32.154	31.961	32.259	0					13	6	3	0	0	0	0.10915	1	12161	12161		77.318	7.69	1	111600			5191	1100	2744	2765	5292	5292					0.09543545936935516
ATVITTEKR	9	Unmodified	_ATVITTEKR_					0	0	0		ENST00000476701.5_1_7:4169443-4308379:+|nuORF;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant;SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7981262207031	2	509.798206	1017.58186	-0.11161	-5.6899E-05	0.31668	0.00016144	0.20506	0.00010454	509.7982978798667	17.916	0.30299	17.916	17.83	18.133	0					19	8	4	0	0	0	5.4201E-05	1	4372	4372		195.06	9.345	1	3894000			5192	4741	2745	2766	5293	5293					0.07377127988991106
ATVITTEKR	9	Unmodified	_ATVITTEKR_					0	0	0		ENST00000476701.5_1_7:4169443-4308379:+|nuORF;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant;SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.79827880859375	2	509.798206	1017.58186	-0.013597	-6.9317E-06	0.42677	0.00021757	0.41317	0.00021063	509.79847249625027	18.245	0.64403	18.245	18.159	18.803	0					36	15	5	0	0	0	0.013878	1	5287	5287		132.76	6.5153	1	27238000			5193	4741	2745	2766	5294	5294					0.07377127988991106
ATVKASIISEL	11	Unmodified	_ATVKASIISEL_					0	0	0		SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.89178466796875	3	377.892173	1130.65469	-0.12955	-4.8957E-05	-0.41352	-0.00015627	-0.54307	-0.00020522	377.8920560827883	27.621	0.093643	27.621	27.536	27.629	0					4	2	2	0	0	0	0.60833	1	9052	9052		36.318	8.2362	1	53745			5194	5420	2746	2767	5295	5295					0.0945883699175738
ATVKEQIVK	9	Unmodified	_ATVKEQIVK_					0	0	0		ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.2096252441406	3	339.209725	1014.60735	0.66769	0.00022649	-0.95338	-0.0003234	-0.28568	-9.6907E-05	339.20935606482254	19.787	0.14004	19.787	19.746	19.886	0					9	3	4	0	0	0	0.30841	1	6043	6043		49.536	19.985	1	807580			5195	3836	2747	2768	5296	5296					0.1006260251143658
ATVKEQIVK	9	Unmodified	_ATVKEQIVK_					0	0	0		ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3109436035156	2	508.310949	1014.60735	0.18632	9.4707E-05	-0.19101	-9.7094E-05	-0.0046955	-2.3868E-06	508.3107913041255	19.684	0.2152	19.684	19.576	19.792	0					8	4	3	0	0	0	2.6499E-05	1	6273	6273		173.39	72.139	1	2085900			5196	3836	2747	2768	5297	5297					0.1006260251143658
ATVKEQIVK	9	Unmodified	_ATVKEQIVK_					0	0	0		ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.31121826171875	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.57	1	19.57	19.07	20.07	0								0	0	0	0.16368	1	5340	5340		49.536	17.581	1				5197	3836	2747	2768	5298	5298					0.1006260251143658
ATVKEQIVK	9	Unmodified	_ATVKEQIVK_					0	0	0		ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.310791015625	2	508.310949	1014.60735	-0.10264	-5.2173E-05	-0.11394	-5.7918E-05	-0.21658	-0.00011009	508.3108363061996	19.698	0.21698	19.698	19.591	19.808	0					9	4	3	0	0	0	0.026656	1	6146	6146		96.034	18.716	1	2570800			5198	3836	2747	2768	5299	5299					0.1006260251143658
ATVKLEHAK	9	Unmodified	_ATVKLEHAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.86614990234375	3	332.86607	995.57638	0.37199	0.00012382	-0.14202	-4.7272E-05	0.22998	7.6552E-05	332.8660782974105	15.47	0.10535	15.47	15.423	15.528	0					7	4	2	0	0	0	0.47473	1	3375	3375		50.034	20.863	1	182430			5199	3083	2748	2769	5300	5300					0.07841449197178463
ATVKLEHAK	9	Unmodified	_ATVKLEHAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7955017089844	2	498.795466	995.57638	-1.0794	-0.00053839	1.0268	0.00051216	-0.052592	-2.6233E-05	498.7959912010945	15.551	0.1038	15.551	15.483	15.587	0					8	3	3	0	0	0	0.026848	1	3569	3569		112.11	40.23	1	243280			5200	3083	2748	2769	5301	5301					0.07841449197178463
ATVKLEHAK	9	Unmodified	_ATVKLEHAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.79534912109375	2	498.795466	995.57638	0.83854	0.00041826	-1.1229	-0.0005601	-0.28437	-0.00014184	498.79492601875114	15.777	0.2608	15.777	15.669	15.93	0					8	5	2	0	0	0	0.013878	1	4391	4391		132.76	57.715	1	5403900			5201	3083	2748	2769	5302	5302					0.07841449197178463
ATVKLEHAK	9	Unmodified	_ATVKLEHAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7957458496094	2	498.795466	995.57638	0.17059	8.5089E-05	0.7319	0.00036507	0.90249	0.00045016	498.7957083708792	15.573	0.095809	15.573	15.507	15.603	0					5	3	2	0	0	0	0.034688	1	3516	3516		104.42	11.228	1	181100			5202	3083	2748	2769	5303	5303					0.07841449197178463
ATVKLEHAK	9	Unmodified	_ATVKLEHAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.86614990234375	3	332.86607	995.57638	-0.035458	-1.1803E-05	0.45325	0.00015087	0.41779	0.00013907	332.866120555782	15.543	0.072721	15.543	15.507	15.58	0					6	2	3	0	0	0	0.48389	1	3517	3517		58.23	34.707	1	112920			5203	3083	2748	2769	5304	5304					0.07841449197178463
ATVKLEHAK	9	Unmodified	_ATVKLEHAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7954406738281	2	498.795466	995.57638	-2.2027	-0.0010987	2.5356	0.0012647	0.33285	0.00016603	498.7966575224905	15.567	0.12318	15.567	15.496	15.619	0					7	4	2	0	0	0	0.022525	1	3524	3524		117.81	41.037	1	244710			5204	3083	2748	2769	5305	5305					0.07841449197178463
ATVKTGLQK	9	Unmodified	_ATVKTGLQK_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-3|NSD3;ENST00000525081.1_1_8:38175476-38176470:-|nuORF	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.29022216796875	2	473.290017	944.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.9	1	16.9	16.4	17.4	0								0	0	0	0.34845	1	4924	4924		25.574	4.6271	1				5205	4788	2749	2770	5306	5306					0.0909804682290769
ATVLEAETRRL	11	Unmodified	_ATVLEAETRRL_					0	0	0		nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250	nc|ENSG00000126001|Q9BV73-2|CEP250	nc|ENSG00000126001|Q9BV73-2|CEP250	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.2418212890625	3	420.241976	1257.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.614	1	18.614	18.114	19.114	0								0	0	0	0.45674	1	4659	4659		23.378	0.81632	1				5206	3457	2750	2771	5307	5307					0.08555545000558595
ATVLFGIAR	9	Unmodified	_ATVLFGIAR_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2860412597656	2	474.287277	946.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.296	1	41.296	40.796	41.796	0								0	0	0	0.2591	1	13733	13733		42.396	3.59	1				5207	3407	2751	2772	5308	5308					0.08458368031085683
ATVLFGIAR	9	Unmodified	_ATVLFGIAR_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2875061035156	2	474.287277	946.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.257	1	41.257	40.757	41.757	0								0	0	0	0.29774	1	14560	14560		35.618	2.1027	1				5208	3407	2751	2772	5309	5309					0.08458368031085683
ATVLPSSA	8	Unmodified	_ATVLPSSA_					0	0	0			REV__ENST00000338488.8_1_9:102584219-102584522:+|nuORF	REV__ENST00000338488.8_1_9:102584219-102584522:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2106018066406	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.676	1	48.676	48.176	49.176	0								0	0	0	1.7419	1	19325	19325		40.573	7.057	1		+		5209	18431	2752	2773	5310	5310					0.019344490519983992
ATVLQYAPKQ	10	Unmodified	_ATVLQYAPKQ_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.1793212890625	3	373.544996	1117.61316	0.34407	0.00012853	-2.7439	-0.001025	-2.3998	-0.00089644	373.87885821640754	38.518	0.28551	38.518	38.325	38.61	0					14	9	2	0	0	0	0.70274	1	14673	14673		21.686	1.689	1	101500			5210	2267	2753	2774	5311	5311					0.05905701023084475
ATVLQYAPKQ	10	Unmodified	_ATVLQYAPKQ_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.54327392578125	3	373.544996	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.478	1	44.478	43.978	44.978	0								0	0	0	0.4201	1	17309	17309		16.717	0.71061	1				5211	2267	2753	2774	5312	5312					0.05905701023084475
ATVLTSVKK	9	Unmodified	_ATVLTSVKK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16553955-16554369:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7999572753906	2	473.800217	945.585882	-0.28838	-0.00013664	-0.45506	-0.00021561	-0.74345	-0.00035224	473.7999840289582	19.898	0.14817	19.898	19.822	19.97	0					7	4	2	0	0	0	0.07136	1	5238	5238		87.696	28.914	1	397680			5212	1870	2754	2775	5313	5313					0.1109121748271491
ATVLTSVKK	9	Unmodified	_ATVLTSVKK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16553955-16554369:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.80029296875	2	473.800217	945.585882	-0.50849	-0.00024092	0.24791	0.00011746	-0.26059	-0.00012347	473.80031263201306	20.28	0.15854	20.28	20.18	20.339	0					8	3	3	0	0	0	0.0059092	1	6255	6255		154.12	63.749	1	1497900			5213	1870	2754	2775	5314	5314					0.1109121748271491
ATVLTSVKK	9	Unmodified	_ATVLTSVKK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16553955-16554369:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7999572753906	2	473.800217	945.585882	-1.5779	-0.00074761	1.732	0.00082062	0.15409	7.3008E-05	473.800792331269	19.969	0.13809	19.969	19.872	20.011	0					8	4	3	0	0	0	0.53064	1	5512	5512		29.17	3.7199	1	125890			5214	1870	2754	2775	5315	5315					0.1109121748271491
ATVLTSVKK	9	Unmodified	_ATVLTSVKK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16553955-16554369:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7999267578125	2	473.800217	945.585882	0.60242	0.00028543	-1.1447	-0.00054236	-0.54228	-0.00025693	473.7996668061461	20.17	0.21724	20.17	20.062	20.28	0					7	4	2	0	0	0	0.056004	1	6507	6507		93.143	28.936	1	1386000			5215	1870	2754	2775	5316	5316					0.1109121748271491
ATVLTTERK	9	Unmodified	_ATVLTTERK_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.201171875	3	340.201229	1017.58186	0.51111	0.00017388	-0.49234	-0.0001675	0.018768	6.3848E-06	340.2010756633264	18.245	0.35695	18.245	18.159	18.516	0					23	8	5	0	0	0	0.48389	1	5291	5291		49.536	0	1	7765200			5216	2613	2755	2776	5317	5317					0.07377127988991106
ATVLTTERK	9	Unmodified	_ATVLTTERK_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7983703613281	2	509.798206	1017.58186	-0.34627	-0.00017653	0.39833	0.00020307	0.052062	2.6541E-05	509.7984264142253	17.95	0.27007	17.95	17.855	18.125	0					16	7	4	0	0	0	0.0076184	1	4590	4590		146.79	5.265	1	3552400			5217	2613	2755	2776	5318	5318					0.07377127988991106
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.55853271484375	3	345.558466	1033.65357	0.38913	0.00013447	-0.27767	-9.5951E-05	0.11146	3.8516E-05	345.5583731249535	28.464	0.15187	28.464	28.368	28.52	0					9	5	2	0	0	0	0.25716	1	8892	8892		54.776	30.257	1	104080			5218	2823	2756	2777	5319	5319					0.1380866741351383
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.8344116210938	2	517.83406	1033.65357	0.42799	0.00022163	0.36181	0.00018736	0.78981	0.00040899	517.8341638084714	28.45	0.26035	28.45	28.362	28.623	0					22	10	3	0	0	0	0.032181	1	8877	8877		101.25	46.476	1	292070			5219	2823	2756	2777	5320	5320					0.1380866741351383
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.55841064453125	3	345.558466	1033.65357	0.68602	0.00023706	-0.58313	-0.0002015	0.10289	3.5556E-05	345.5581636248502	28.732	0.25902	28.732	28.643	28.902	0					16	6	4	0	0	0	0.25716	1	10197	10197		54.776	39.911	1	752680			5220	2823	2756	2777	5321	5321					0.1380866741351383
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.8341674804688	2	517.83406	1033.65357	0.04909	2.5421E-05	0.55506	0.00028743	0.60416	0.00031285	517.8342536142408	28.727	0.45432	28.727	28.591	29.046	0					27	11	4	0	0	0	0.0015666	1	10171	10171		148.99	52.796	1	3000700			5221	2823	2756	2777	5322	5322					0.1380866741351383
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.558349609375	3	345.558466	1033.65357	0.3459	0.00011953	-0.44862	-0.00015502	-0.10272	-3.5495E-05	345.5582955557741	28.737	0.36273	28.737	28.581	28.944	0					17	7	4	0	0	0	0.10915	1	10551	10551		77.318	45.788	1	919710			5222	2823	2756	2777	5323	5323					0.1380866741351383
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.833984375	2	517.83406	1033.65357	-0.41894	-0.00021694	0.50375	0.00026086	0.08481	4.3917E-05	517.8342286272311	28.704	0.31324	28.704	28.597	28.911	0					17	6	4	0	0	0	0.0037134	1	10557	10557		162.25	66.062	1	1877000			5223	2823	2756	2777	5324	5324					0.1380866741351383
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.5586242675781	3	345.558466	1033.65357	0.48568	0.00016783	-0.38828	-0.00013417	0.097406	3.3659E-05	345.5583788056051	28.498	0.16967	28.498	28.416	28.586	0					8	4	2	0	0	0	0.1424	1	9476	9476		69.628	39.31	1	136690			5224	2823	2756	2777	5325	5325					0.1380866741351383
ATVLYIVKK	9	Unmodified	_ATVLYIVKK_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.558349609375	3	345.558466	1033.65357	-0.034676	-1.1983E-05	-0.17715	-6.1214E-05	-0.21182	-7.3197E-05	345.55837896832105	28.666	0.26875	28.666	28.558	28.826	0					15	5	4	0	0	0	0.056004	1	10400	10400		93.143	62.826	1	1317700			5225	2823	2756	2777	5326	5326					0.1380866741351383
ATVMFYLAP	9	Unmodified	_ATVMFYLAP_					0	0	0			REV__ENST00000480599.6_1_7:80276056-80276293:+|nuORF	REV__ENST00000480599.6_1_7:80276056-80276293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.1771545410156	3	338.177256	1011.50994	1.4835	0.00050167	-1.8942	-0.00064059	-0.41079	-0.00013892	338.1767074997778	14.324	0.20313	14.324	14.217	14.42	0					10	4	4	0	0	0	0.47038	1	3700	3700		35.618	7.5368	1	597190	+		5226	19592	2757	2778	5327	5327					0.004644973109179773
ATVNEIVLK	9	Unmodified	_ATVNEIVLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ARHGEF18-MAPKAP1|2|fusion;ARHGEF18-MAPKAP1|1|fusion;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.79730224609375	2	493.797675	985.580796	-0.092714	-4.5782E-05	0.36796	0.0001817	0.27524	0.00013591	493.7978320104466	32.615	0.16145	32.615	32.517	32.679	0					10	7	2	0	0	0	0.50858	1	10537	10537		31.53	0	1	70005			5227	3118;10133	2758	2779	5328	5328					0.08742913620096715
ATVNEIVLK	9	Unmodified	_ATVNEIVLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ARHGEF18-MAPKAP1|2|fusion;ARHGEF18-MAPKAP1|1|fusion;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7973327636719	2	493.797675	985.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.833	1	32.833	32.333	33.333	0								0	0	0	0.0012491	1	12512	12512		125.71	38.016	1				5228	3118;10133	2758	2779	5329	5329					0.08742913620096715
ATVNEIVLK	9	Unmodified	_ATVNEIVLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ARHGEF18-MAPKAP1|2|fusion;ARHGEF18-MAPKAP1|1|fusion;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.79693603515625	2	493.797675	985.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.657	1	32.657	32.157	33.157	0								0	0	0	0.015064	1	11377	11377		104.06	16.36	1				5229	3118;10133	2758	2779	5330	5330					0.08742913620096715
ATVNEIVLK	9	Unmodified	_ATVNEIVLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ARHGEF18-MAPKAP1|2|fusion;ARHGEF18-MAPKAP1|1|fusion;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7976989746094	2	493.797675	985.580796	-0.62372	-0.00030799	-0.74881	-0.00036976	-1.3725	-0.00067775	493.79803095466326	32.829	0.39984	32.829	32.721	33.121	0					13	8	3	0	0	0	0.012936	1	12424	12424		134.77	30.709	1	340310			5230	3118;10133	2758	2779	5331	5331					0.08742913620096715
ATVNMYRASG	10	Unmodified	_ATVNMYRASG_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2570190429688	2	535.258391	1068.50223	-1.3596	-0.00072772	-1.1616	-0.00062177	-2.5212	-0.0013495	535.2577334592994	21.104	0.23715	21.104	21.009	21.246	0					14	5	3	0	0	0	0.43008	1	6062	6062		52.937	8.8199	1	1262200			5231	4216	2759	2780	5332	5332					-0.02928261956640199
ATVNQVLA	8	Unmodified	_ATVNQVLA_					0	0	0		PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant;nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant	PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.2347717285156	2	408.23471	814.454868	-0.54047	-0.00022064	0.32683	0.00013342	-0.21364	-8.7217E-05	408.23481662660566	19.055	0.21608	19.055	18.946	19.162	0					9	4	3	0	0	0	0.65276	1	5830	5830		40.573	0	1	637730			5232	4588	2760	2781	5333	5333					0.040218268346734476
ATVPKTEIREK	11	Unmodified	_ATVPKTEIREK_					0	0	0		ENST00000466129.5_1_10:79793659-79795541:+|nuORF;ENSG00000138326|ENST00000372360|RPS24;ENST00000485708.6_1_10:79793659-79797725:+|nuORF;ENST00000478655.5_1_10:79793659-79797065:+|nuORF;nc|ENSG00000138326|P62847-3|RPS24;nc|ENSG00000138326|P62847|RPS24;ENST00000465692.1_1_10:79795142-79808843:+|nuORF;nc|ENSG00000138326|P62847-4|RPS24	ENST00000466129.5_1_10:79793659-79795541:+|nuORF	ENST00000466129.5_1_10:79793659-79795541:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.5819396972656	3	424.58211	1270.7245	0.94259	0.00040021	-0.90023	-0.00038222	0.042359	1.7985E-05	424.5816154316926	18.765	0.25637	18.765	18.559	18.816	0					12	6	3	0	0	0	0.6208	1	5562	5562		35.178	3.544	1	316920			5233	4245	2761	2782	5334	5334					0.09996715660372502
ATVPKTEIREK	11	Unmodified	_ATVPKTEIREK_					0	0	0		ENST00000466129.5_1_10:79793659-79795541:+|nuORF;ENSG00000138326|ENST00000372360|RPS24;ENST00000485708.6_1_10:79793659-79797725:+|nuORF;ENST00000478655.5_1_10:79793659-79797065:+|nuORF;nc|ENSG00000138326|P62847-3|RPS24;nc|ENSG00000138326|P62847|RPS24;ENST00000465692.1_1_10:79795142-79808843:+|nuORF;nc|ENSG00000138326|P62847-4|RPS24	ENST00000466129.5_1_10:79793659-79795541:+|nuORF	ENST00000466129.5_1_10:79793659-79795541:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.581787109375	3	424.58211	1270.7245	-0.36845	-0.00015644	0.12098	5.1364E-05	-0.24747	-0.00010507	424.5820684023151	18.677	0.2139	18.677	18.522	18.736	0					7	4	2	0	0	0	0.57554	1	5651	5651		38.714	5.6747	1	226510			5234	4245	2761	2782	5335	5335					0.09996715660372502
ATVPMSKKK	9	Unmodified	_ATVPMSKKK_					0	0	0		ENST00000462188.1_1_22:22049506-22049776:+|nuORF;ENSG00000100023|ENST00000398831|PPIL2	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2944030761719	2	495.294245	988.573937	-0.064237	-3.1816E-05	0.24334	0.00012053	0.17911	8.871E-05	495.29444634888813	13.892	0.076409	13.892	13.844	13.92	0					5	3	2	0	0	0	0.44593	1	2789	2789		37.812	3.639	1	97015			5235	1961	2762	2783	5336	5336					0.07919277467874508
ATVPMSKKK	9	Unmodified	_ATVPMSKKK_					0	0	0		ENST00000462188.1_1_22:22049506-22049776:+|nuORF;ENSG00000100023|ENST00000398831|PPIL2	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.29412841796875	2	495.294245	988.573937	-0.40659	-0.00020138	0.18449	9.1378E-05	-0.2221	-0.00011	495.2943796305279	14.22	0.1298	14.22	14.132	14.262	0					5	3	2	0	0	0	0.24334	1	3423	3423		56.434	12.057	1	538950			5236	1961	2762	2783	5337	5337					0.07919277467874508
ATVPMSKKK	9	Unmodified	_ATVPMSKKK_					0	0	0		ENST00000462188.1_1_22:22049506-22049776:+|nuORF;ENSG00000100023|ENST00000398831|PPIL2	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2943115234375	2	495.294245	988.573937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.969	1	13.969	13.469	14.469	0								0	0	0	0.14033	1	2879	2879		62.107	9.8082	1				5237	1961	2762	2783	5338	5338					0.07919277467874508
ATVPQASK	8	Unmodified	_ATVPQASK_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.226806640625	2	401.226885	800.439217	0.94207	0.00037798	-0.88327	-0.00035439	0.058797	2.3591E-05	401.2265070376576	17.66	0.32825	17.66	17.499	17.828	0					17	8	3	0	0	0	0.2451	1	5034	5034		110.12	22.423	1	757060			5238	7376	2763	2784	5339	5339					0.03101540317618401
ATVPQASK	8	Unmodified	_ATVPQASK_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2269287109375	2	401.226885	800.439217	0.48942	0.00019637	-0.52715	-0.00021151	-0.037735	-1.514E-05	401.2266271413502	17.572	0.27029	17.572	17.413	17.683	0					14	5	3	0	0	0	0.28444	1	5105	5105		87.696	14.817	1	943800			5239	7376	2763	2784	5340	5340					0.03101540317618401
ATVRPPVAVK	10	Unmodified	_ATVRPPVAVK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.8294677734375	2	519.326934	1036.63931	0.56583	0.00029385	0.086522	4.4933E-05	0.65235	0.00033878	519.3270442130007	22.809	0.53352	22.809	22.346	22.879	0					32	16	3	0	0	0	0.58308	1	6447	6447		18.262	0	1	557940			5240	5547	2764	2785	5341	5341					0.12246014985225884
ATVRPPVAVK	10	Unmodified	_ATVRPPVAVK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.32763671875	2	519.326934	1036.63931	0.060866	3.1609E-05	0.26147	0.00013579	0.32234	0.0001674	519.327048641128	23.131	0.94003	23.131	22.323	23.263	0					55	22	4	0	0	0	0.10583	1	7559	7559		72.879	16.158	1	3167400			5241	5547	2764	2785	5342	5342					0.12246014985225884
ATVSGGCVDIL	11	Unmodified	_ATVSGGCVDIL_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.763427734375	2	517.762975	1033.5114	0.061934	3.2067E-05	-0.5606	-0.00029026	-0.49867	-0.00025819	517.7630469207652	42.896	0.074718	42.896	42.843	42.918	0					7	4	2	0	0	0	0.62108	1	14096	14096		35.152	3.1972	1	36605	+		5242	15001	2765	2786	5343	5343					-0.004019133909878292
ATVTKKVAK	9	Unmodified	_ATVTKKVAK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.30853271484375	2	473.30821	944.601866	-1.5433	-0.00073044	1.3247	0.00062701	-0.21853	-0.00010343	473.30885421689453	12.645	0.13611	12.645	12.595	12.731	0					14	8	3	0	0	0	0.023928	1	2515	2515		115.49	30.579	1	325680			5243	7222	2766	2787	5344	5344					0.1273492371960856
ATVTKKVAK	9	Unmodified	_ATVTKKVAK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.3077392578125	2	473.30821	944.601866	0.59802	0.00028305	-1.336	-0.00063236	-0.73802	-0.00034931	473.3074752111994	12.933	0.2693	12.933	12.843	13.112	0					13	6	3	0	0	0	0.085655	1	3040	3040		82.75	27.974	1	4596700			5244	7222	2766	2787	5345	5345					0.1273492371960856
ATVTKKVAK	9	Unmodified	_ATVTKKVAK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.30841064453125	2	473.30821	944.601866	-0.5026	-0.00023789	1.3328	0.00063082	0.83018	0.00039293	473.3087628222291	12.647	0.090372	12.647	12.6	12.69	0					9	5	2	0	0	0	0.10915	1	2459	2459		77.318	22.541	1	160790			5245	7222	2766	2787	5346	5346					0.1273492371960856
ATVTPQKAK	9	Unmodified	_ATVTPQKAK_					0	0	0		nc|ENSG00000102760|Q9H4X1-2|RGCC;ENSG00000102760|ENST00000379359|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2820129394531	2	472.282192	942.549831	-0.73652	-0.00034785	-1.4406	-0.00068035	-2.1771	-0.0010282	472.2812898371048	13.542	0.23762	13.542	13.449	13.687	0					10	5	2	0	0	0	0.30951	1	3326	3326		49.442	1.7842	1	173060			5246	2187	2767	2788	5347	5347					0.07625760305847962
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.26312255859375	2	450.263468	898.512382	0.029435	1.3253E-05	-0.68336	-0.00030769	-0.65393	-0.00029444	450.2631307161104	20.733	0.26096	20.733	20.596	20.857	0					24	9	4	0	0	0	0.037924	1	5593	5593		101.25	24.406	1	1332200			5247	1431	2768	2789	5348	5348					0.05906669040234647
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2632141113281	2	450.263468	898.512382	-0.10099	-4.5471E-05	-0.66047	-0.00029739	-0.76146	-0.00034286	450.26318039189977	20.938	0.31386	20.938	20.781	21.095	0					15	6	3	0	0	0	0.035062	1	6874	6874		104.06	21.752	1	1011500			5248	1431	2768	2789	5349	5349					0.05906669040234647
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2635192871094	2	450.263468	898.512382	0.67964	0.00030602	-0.89232	-0.00040178	-0.21268	-9.5761E-05	450.26304410859905	20.972	0.26481	20.972	20.813	21.078	0					14	5	3	0	0	0	0.035062	1	6866	6866		104.06	18.896	1	4914000			5249	1431	2768	2789	5350	5350					0.05906669040234647
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2632141113281	2	450.263468	898.512382	-0.19485	-8.7733E-05	-0.38602	-0.00017381	-0.58087	-0.00026154	450.26324789375593	20.83	0.34798	20.83	20.644	20.992	0					17	8	3	0	0	0	0.12834	1	5918	5918		72.879	6.45	1	930220			5250	1431	2768	2789	5351	5351					0.05906669040234647
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2635498046875	2	450.263468	898.512382	-2.6047	-0.0011728	2.056	0.00092576	-0.54866	-0.00024704	450.2645276733199	20.817	0.19912	20.817	20.677	20.876	0					10	4	3	0	0	0	0.22837	1	5935	5935		58.23	10.573	1	243550			5251	1431	2768	2789	5352	5352					0.05906669040234647
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.26336669921875	2	450.263468	898.512382	-0.40161	-0.00018083	0.12246	5.5141E-05	-0.27915	-0.00012569	450.2634877384481	20.9	0.31619	20.9	20.793	21.11	0					22	6	4	0	0	0	0.12834	1	6704	6704		72.879	8.672	1	5100000			5252	1431	2768	2789	5353	5353					0.05906669040234647
ATVTTTVIATA	11	Unmodified	_ATVTTTVIATA_					0	0	0			REV__nc|ENSG00000155966|P51816-7|AFF2	REV__nc|ENSG00000155966|P51816-7|AFF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.2013854980469	3	350.201007	1047.58119	1.4527	0.00050874	-0.31772	-0.00011127	1.135	0.00039748	350.20088945065044	18.925	0.31362	18.925	18.818	19.132	0					16	6	4	0	0	0	0.67983	1	5904	5904		29.551	1.4693	1	2646800	+		5253	12099	2769	2790	5354	5354					0.059302885493025315
ATVTVTLRQG	10	Unmodified	_ATVTVTLRQG_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE;ENST00000436137.2_1_11:124530361-124543691:-|nuORF	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3036499023438	2	523.303655	1044.59276	0.079464	4.1584E-05	0.95387	0.00049917	1.0333	0.00054075	523.303994891865	50.939	0.41005	50.939	50.63	51.04	0					34	25	2	0	0	0	0.6796	1	18271	18271		24.519	4.5224	1	75131			5254	2603	2770	2791	5355	5355					0.07224530363305348
ATVVEETAV	9	Unmodified	_ATVVEETAV_					0	0	0			REV__nc|ENSG00000104064|Q06547-4|GABPB1	REV__nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7430419921875	2	459.742565	917.470577	-0.15494	-7.1232E-05	0.41817	0.00019225	0.26323	0.00012102	459.7425814466667	35.353	0.25251	35.353	35.224	35.477	0					13	7	2	0	0	0	0.1236	1	13680	13680		73.975	8.1716	1	86850	+		5255	13707	2771	2792	5356	5356					0.008540685610569199
ATVVEETAV	9	Unmodified	_ATVVEETAV_					0	0	0			REV__nc|ENSG00000104064|Q06547-4|GABPB1	REV__nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7424011230469	2	459.742565	917.470577	-0.44854	-0.00020621	0.012093	5.5598E-06	-0.43645	-0.00020065	459.7424924974409	35.288	0.5747	35.288	35.129	35.704	0					17	11	2	0	0	0	0.18605	1	13621	13621		63.306	7.8021	1	348570	+		5256	13707	2771	2792	5357	5357					0.008540685610569199
ATVVGLLAAV	10	Unmodified	_ATVVGLLAAV_					0	0	0		nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;ENST00000514023.5_1_3:125743683-125802950:-|nuORF	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2890930175781	2	457.289485	912.564418	-0.15025	-6.8707E-05	-0.127	-5.8074E-05	-0.27724	-0.00012678	457.2893585816339	37.035	0.6	37.035	36.684	37.284	0					41	18	3	0	0	0	0.40673	1	14485	14485		55.504	2.1528	1	247260			5257	2856	2772	2793	5358	5358					0.10463832453990562
ATVVGLLAAV	10	Unmodified	_ATVVGLLAAV_					0	0	0		nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;ENST00000514023.5_1_3:125743683-125802950:-|nuORF	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2890319824219	2	457.289485	912.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.74	1	36.74	36.24	37.24	0								0	0	0	0.3428	1	13154	13154		44.117	4.864	1				5258	2856	2772	2793	5359	5359					0.10463832453990562
ATVYLIYLK	9	Unmodified	_ATVYLIYLK_					0	0	0		nc|ENSG00000136240|P33947-2|KDELR2;ENSG00000136240|ENST00000258739|KDELR2	nc|ENSG00000136240|P33947-2|KDELR2	nc|ENSG00000136240|P33947-2|KDELR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.3268432617188	2	542.326068	1082.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.667	1	46.667	46.167	47.167	0								0	0	0	0.073265	1	18666	18666		79.451	40.645	1				5259	4066	2773	2794	5360	5360					0.09956961176590085
ATWATKELRK	10	Unmodified	_ATWATKELRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.8996276855469	3	401.899662	1202.67716	0.94615	0.00038026	-1.1373	-0.00045709	-0.19118	-7.6834E-05	401.8991523801108	21.784	0.19388	21.784	21.738	21.932	0					10	4	3	0	0	0	0.35046	1	6986	6986		61.691	28.879	1	729850			5260	2528	2774	2795	5361	5361					0.08392481180021605
ATWATKELRK	10	Unmodified	_ATWATKELRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.8995361328125	3	401.899662	1202.67716	-0.59883	-0.00024067	0.51083	0.0002053	-0.088003	-3.5368E-05	401.89974467303733	21.747	0.31711	21.747	21.636	21.953	0					13	6	3	0	0	0	0.65895	1	7138	7138		27.047	7.0505	1	304280			5261	2528	2774	2795	5362	5362					0.08392481180021605
ATWCVPILVLI	11	Unmodified	_ATWCVPILVLI_					0	0	0			REV__ENSG00000213937|ENST00000445369|CLDN9	REV__ENSG00000213937|ENST00000445369|CLDN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.9105529785156	3	409.91051	1226.7097	-1.4193	-0.00058179	0.94835	0.00038874	-0.47097	-0.00019305	409.91093881975644	20.631	0.26797	20.631	20.525	20.793	0					16	8	3	0	0	0	0.59204	1	5785	5785		37.508	4.4688	1	813810	+		5262	17572	2775	2796	5363	5363					0.10541552258678166
ATWCVPILVLI	11	Unmodified	_ATWCVPILVLI_					0	0	0			REV__ENSG00000213937|ENST00000445369|CLDN9	REV__ENSG00000213937|ENST00000445369|CLDN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.9106140136719	3	409.91051	1226.7097	0.81869	0.00033559	-1.0425	-0.00042733	-0.22379	-9.1734E-05	409.9101579935584	20.832	0.36729	20.832	20.675	21.042	0					15	7	3	0	0	0	0.575	1	6672	6672		38.754	3.5754	1	1296500	+		5263	17572	2775	2796	5364	5364					0.10541552258678166
ATWMGKIHSK	10	Unmodified	_ATWMGKIHSK_					0	0	0		ENST00000570572.1_1_17:53638398-53638659:-|nuORF;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD	ENST00000570572.1_1_17:53638398-53638659:-|nuORF	ENST00000570572.1_1_17:53638398-53638659:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.8073120117188	2	579.808051	1157.60155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.252	1	22.252	21.752	22.752	0								0	0	0	0.4044	1	6520	6520		29.17	4.6509	1				5264	3365	2776	2797	5365	5365					0.029051807281121
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		ENST00000486301.5_1_3:46717393-46718248:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.24798583984375	2	476.248349	950.482145	-0.37896	-0.00018048	-2.4525	-0.001168	-2.8315	-0.0013485	476.24824170402326	20.034	0.16143	20.034	19.903	20.064	0					7	3	3	0	0	0	0.05785	1	6147	6147		106.68	49.962	1	721150			5265	6698	2777	2798	5366	5366					0.004923103750343216
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		ENST00000486301.5_1_3:46717393-46718248:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2477111816406	2	476.248349	950.482145	-1.5287	-0.00072806	-1.0827	-0.00051562	-2.6114	-0.0012437	476.2486549118095	19.732	0.13673	19.732	19.65	19.787	0					13	5	3	0	0	0	0.097781	1	5388	5388		95.815	35.697	1	262440			5266	6698	2777	2798	5367	5367					0.004923103750343216
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		ENST00000486301.5_1_3:46717393-46718248:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2478942871094	2	476.248349	950.482145	0.63103	0.00030053	-3.8835	-0.0018495	-3.2524	-0.001549	476.2473620064461	19.918	0.31959	19.918	19.809	20.128	0					13	6	3	0	0	0	0.010349	1	6386	6386		141.52	38.747	1	1960500			5267	6698	2777	2798	5368	5368					0.004923103750343216
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		ENST00000486301.5_1_3:46717393-46718248:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2478332519531	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.813	1	19.813	19.313	20.313	0								0	0	0	0.3185	1	5454	5454		47.96	5.5634	1				5268	6698	2777	2798	5369	5369					0.004923103750343216
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		ENST00000486301.5_1_3:46717393-46718248:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2478332519531	2	476.248349	950.482145	-2.7537	-0.0013114	0.084638	4.0309E-05	-2.669	-0.0012711	476.2491485066279	19.77	0.13811	19.77	19.689	19.827	0					9	3	3	0	0	0	0.065649	2	5444	5426;5444		104.06	21.816	1	272170			5269	6698	2777	2798	5370;5371	5371					0.004923103750343216
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		ENST00000486301.5_1_3:46717393-46718248:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	ENST00000486301.5_1_3:46717393-46718248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2481689453125	2	476.248349	950.482145	0.78497	0.00037384	-4.2945	-0.0020452	-3.5095	-0.0016714	476.24779746739006	19.936	0.37067	19.936	19.723	20.094	0					15	7	4	0	0	0	0.030421	1	6262	6262		117.81	43.556	1	1208300			5270	6698	2777	2798	5372	5372					0.004923103750343216
ATYAPVISAEK	11	Unmodified	_ATYAPVISAEK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.311767578125	2	575.311146	1148.60774	1.8744	0.0010784	-1.4132	-0.00081305	0.46121	0.00026534	575.3106401864248	30.182	0.4178	30.182	29.9	30.317	0					22	9	4	0	0	0	0.27742	1	11266	11266		65.157	6.3753	1	549490			5271	3319;10430	2778	2799	5373	5373					0.03937977440614304
ATYEQGVEK	9	Unmodified	_ATYEQGVEK_					0	0	0		nc|ENSG00000211747|A0A075B6N2|TRBV20-1	nc|ENSG00000211747|A0A075B6N2|TRBV20-1	nc|ENSG00000211747|A0A075B6N2|TRBV20-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.751708984375	2	512.750921	1023.48729	0.54089	0.00027734	0.60094	0.00030813	1.1418	0.00058548	512.7514408806427	19.603	0.11512	19.603	19.527	19.642	0					4	2	2	0	0	0	0.17062	1	6230	6230		65.157	22.293	1	69520			5272	11739	2779	2800	5374	5374					-0.023514305529943158
ATYERVVYK	9	Unmodified	_ATYERVVYK_					0	0	0		ENST00000461797.5_2_3:58296047-58302269:+|nuORF;ENSG00000163684|ENST00000295959|RPP14	ENST00000461797.5_2_3:58296047-58302269:+|nuORF	ENST00000461797.5_2_3:58296047-58302269:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.80712890625	2	564.806031	1127.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.842	1	22.842	22.342	23.342	0								0	0	0	0.22075	1	6782	6782		47.96	3.5823	1				5273	5593	2780	2801	5375	5375					0.038814145060541705
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7644653320312	2	528.764029	1055.5135	0.50433	0.00026667	0.17536	9.2724E-05	0.67969	0.00035939	528.7640861565708	13.431	0.17581	13.431	13.376	13.552	0					23	9	4	0	0	0	0.063171	1	2630	2630		90.601	23.107	1	576460			5274	6381	2781	2802	5376	5376					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7642822265625	2	528.764029	1055.5135	0.11011	5.8224E-05	0.32916	0.00017405	0.43928	0.00023227	528.7640954574147	13.702	0.44866	13.702	13.613	14.061	0					35	11	4	0	0	0	0.0076184	2	3164	3164;3275		146.79	64.035	1	11637000			5275	6381	2781	2802	5377;5378	5377					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7653198242188	2	528.764029	1055.5135	0.15157	8.0145E-05	1.6267	0.00086012	1.7782	0.00094026	528.7650168689889	13.479	0.099126	13.479	13.422	13.521	0					7	5	2	0	0	0	0.022525	1	2778	2778		117.81	64.874	1	67276			5276	6381	2781	2802	5379	5379					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.76416015625	2	528.764029	1055.5135	0.46632	0.00024657	0.16419	8.682E-05	0.63051	0.00033339	528.7640156469746	13.475	0.10101	13.475	13.433	13.534	0					10	5	3	0	0	0	0.020674	1	2776	2776		120.87	53.375	1	227070			5277	6381	2781	2802	5380	5380					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.8450622558594	3	352.845111	1055.5135	1.446	0.0005102	-1.5695	-0.00055379	-0.12355	-4.3596E-05	352.8445185191564	13.696	0.24981	13.696	13.639	13.889	0					11	5	3	0	0	0	0.33044	1	3402	3402		72.879	46.186	1	980490			5278	6381	2781	2802	5381	5381					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7643432617188	2	528.764029	1055.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.715	1	13.715	13.215	14.215	0								0	0	0	0.006929	1	3401	3401		155.58	83.707	1				5279	6381	2781	2802	5382	5382					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7640380859375	2	528.764029	1055.5135	0.28584	0.00015114	0.36541	0.00019322	0.65125	0.00034436	528.7642249346042	13.683	0.24789	13.683	13.625	13.873	0					17	5	4	0	0	0	0.02429	1	3395	3395		114.89	40.92	1	1224000			5280	6381	2781	2802	5383	5383					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.84478759765625	3	352.845111	1055.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.444	1	13.444	12.944	13.944	0								0	0	0	0.3428	1	2703	2703		41.427	15.363	1				5281	6381	2781	2802	5384	5384					-0.012031613815224773
ATYETKESK	9	Unmodified	_ATYETKESK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.763671875	2	528.764029	1055.5135	3.4606	0.0018299	-3.8606	-0.0020414	-0.40003	-0.00021152	528.761928766749	13.646	0.5005	13.646	13.541	14.042	0					18	10	2	0	0	0	0.0037134	1	3226	3226		164.46	68.265	1	14683000			5282	6381	2781	2802	5385	5385					-0.012031613815224773
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.54345703125	3	395.543432	1183.60847	0.58117	0.00022988	0.16997	6.7229E-05	0.75114	0.00029711	395.54341937572025	12.26	0.041916	12.26	12.223	12.265	0					4	2	2	0	0	0	0.36432	1	2321	2321		60.167	29.598	1	178760			5283	6381	2782	2803	5386	5386					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.543701171875	3	395.543432	1183.60847	0.90447	0.00035776	-0.74279	-0.0002938	0.16168	6.3951E-05	395.5431420480053	12.474	0.39784	12.474	12.411	12.809	0					21	12	3	0	0	0	0.39647	1	2629	2629		56.632	15.552	1	1250400			5284	6381	2782	2803	5387	5387					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.811767578125	2	592.81151	1183.60847	0.28256	0.00016751	0.068246	4.0457E-05	0.35081	0.00020796	592.8115711317315	12.469	0.13246	12.469	12.406	12.538	0					11	4	4	0	0	0	0.01169	1	2634	2634		136.99	90.532	1	1051000			5285	6381	2782	2803	5388	5388					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.3143920898438	2	592.81151	1183.60847	-0.54044	-0.00032038	1.1668	0.00069168	0.62634	0.0003713	592.812252117654	12.234	0.070927	12.234	12.197	12.268	0					13	4	4	0	0	0	0.022219	1	2405	2405		122.94	58.732	1	397870			5286	6381	2782	2803	5389	5389					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.543212890625	3	395.543432	1183.60847	0.10437	4.1282E-05	-0.63967	-0.00025302	-0.5353	-0.00021173	395.54313119455827	12.492	0.22002	12.492	12.398	12.618	0					8	5	3	0	0	0	0.073361	1	2813	2813		101.46	61.587	1	557390			5287	6381	2782	2803	5390	5390					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.5436706542969	3	395.543432	1183.60847	0.20123	7.9593E-05	0.34191	0.00013524	0.54313	0.00021483	395.54356174182516	12.196	0.074184	12.196	12.143	12.217	0					9	4	3	0	0	0	0.33468	1	2350	2350		63.426	37.363	1	160940			5288	6381	2782	2803	5391	5391					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.54345703125	3	395.543432	1183.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.198	1	12.198	11.698	12.698	0								0	0	0	0.28607	1	2354	2354		53.089	27.515	1				5289	6381	2782	2803	5392	5392					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.8118286132812	2	592.81151	1183.60847	-1.7927	-0.0010627	2.1931	0.0013001	0.40043	0.00023738	592.8129580761657	12.185	0.074183	12.185	12.148	12.222	0					9	4	3	0	0	0	0.012377	1	2352	2352		145.46	71.206	1	255200			5290	6381	2782	2803	5393	5393					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.5434265136719	3	395.543432	1183.60847	-0.64761	-0.00025616	0.43431	0.00017179	-0.21331	-8.4373E-05	395.54359345465946	12.497	0.1323	12.497	12.426	12.559	0					9	3	4	0	0	0	0.31894	1	2664	2664		65.157	31.071	1	797100			5291	6381	2782	2803	5394	5394					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.5433349609375	3	395.543432	1183.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.507	1	12.507	12.007	13.007	0								0	0	0	0.23291	1	2676	2676		60.167	22.355	1				5292	6381	2782	2803	5395	5395					0.024007720896634055
ATYETKESKK	10	Unmodified	_ATYETKESKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.8114624023438	2	592.81151	1183.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.511	1	12.511	12.011	13.011	0								0	0	0	0.39499	1	2678	2678		33.922	6.0394	1				5293	6381	2782	2803	5396	5396					0.024007720896634055
ATYGDTINR	9	Unmodified	_ATYGDTINR_					0	0	0		SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7488098144531	2	505.748713	1009.48287	-0.044975	-2.2746E-05	-0.03521	-1.7808E-05	-0.080186	-4.0554E-05	505.7486126164604	23.039	0.56895	23.039	22.958	23.526	0					20	13	4	0	0	0	0.023928	1	7561	7561		115.49	41.239	1	607620			5294	1470	2783	2804	5397	5397					-0.021488949758918352
ATYGDTINR	9	Unmodified	_ATYGDTINR_					0	0	0		SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7484130859375	2	505.748713	1009.48287	-0.74803	-0.00037832	0.39587	0.00020021	-0.35216	-0.00017811	505.748966345868	22.757	0.16062	22.757	22.693	22.854	0					11	6	2	0	0	0	0.12834	1	6739	6739		72.879	33.626	1	120500			5295	1470	2783	2804	5398	5398					-0.021488949758918352
ATYGDTINR	9	Unmodified	_ATYGDTINR_					0	0	0		SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.74859619140625	2	505.748713	1009.48287	1.0707	0.00054148	-1.8854	-0.00095355	-0.81478	-0.00041207	505.7479578451111	22.952	0.26727	22.952	22.794	23.061	0					12	5	3	0	0	0	0.020674	1	7833	7833		120.87	59.896	1	735330			5296	1470	2783	2804	5399	5399					-0.021488949758918352
ATYGDTINR	9	Unmodified	_ATYGDTINR_					0	0	0		SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.74853515625	2	505.748713	1009.48287	1.243	0.00062866	-1.7262	-0.00087301	-0.48314	-0.00024435	505.7479312808416	22.931	0.36196	22.931	22.822	23.184	0					12	7	3	0	0	0	0.063823	1	7713	7713		90.37	33.649	1	650080			5297	1470	2783	2804	5400	5400					-0.021488949758918352
ATYGELQQR	9	Unmodified	_ATYGELQQR_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.26708984375	2	533.269813	1064.52507	0.13858	7.3903E-05	-2.2982	-0.0012256	-2.1597	-0.0011517	533.2682172196481	24.1	0.17897	24.1	24.041	24.22	0					9	4	3	0	0	0	0.10506	1	8072	8072		78.264	24.912	1	299620			5298	6707	2784	2805	5401	5401					-0.004609195675357114
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2641906738281	2	505.264333	1008.51411	0.71207	0.00035979	-0.45323	-0.000229	0.25885	0.00013079	505.26406037223245	13.947	0.13031	13.947	13.895	14.025	0					15	6	3	0	0	0	0.0406	1	2802	2802		98.629	52.677	1	791170			5299	6510	2785	2806	5402	5402					0.01019722848843685
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2640380859375	2	505.264333	1008.51411	0.80584	0.00040716	-0.77094	-0.00038953	0.034899	1.7633E-05	505.26392995510685	14.264	0.72965	14.264	14.184	14.913	0					43	18	5	0	0	0	0.037569	1	3429	3429		101.6	46.097	1	8208100			5300	6510	2785	2806	5403	5403					0.01019722848843685
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2643737792969	2	505.264333	1008.51411	0.11968	6.0468E-05	-0.017763	-8.9752E-06	0.10191	5.1493E-05	505.2643147892674	14.192	0.67485	14.192	14.09	14.764	0					26	14	4	0	0	0	0.025517	1	3636	3636		113.41	53.118	1	8787500			5301	6510	2785	2806	5404	5404					0.01019722848843685
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2643127441406	2	505.264333	1008.51411	0.10987	5.5511E-05	-0.1597	-8.0689E-05	-0.049832	-2.5178E-05	505.26434858512073	14.006	0.20375	14.006	13.94	14.144	0					14	8	3	0	0	0	0.037569	1	2904	2904		101.6	55.649	1	1213300			5302	6510	2785	2806	5405	5405					0.01019722848843685
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.26483154296875	2	505.264333	1008.51411	0.11147	5.632E-05	0.73082	0.00036926	0.84228	0.00042557	505.26460317920106	13.989	0.14763	13.989	13.953	14.101	0					7	5	2	0	0	0	0.063823	1	2899	2899		90.37	37.018	1	158450			5303	6510	2785	2806	5406	5406					0.01019722848843685
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.26446533203125	2	505.264333	1008.51411	-0.31192	-0.0001576	0.23812	0.00012031	-0.073803	-3.729E-05	505.26454106220297	14.214	0.82447	14.214	14.103	14.928	0					32	16	4	0	0	0	0.025517	1	3470	3470		113.41	53.118	1	11191000			5304	6510	2785	2806	5407	5407					0.01019722848843685
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.764892578125	2	549.764363	1097.51417	1.5707	0.0008635	-1.0479	-0.00057611	0.52275	0.00028739	549.7637875214299	19.302	0.21978	19.302	19.222	19.442	0					13	6	3	0	0	0	0.0043426	1	4958	4958		159.28	91.782	1	617350			5305	5547	2786	2807	5408	5408					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.8453674316406	3	366.845334	1097.51417	0.083311	3.0562E-05	-0.066458	-2.438E-05	0.016852	6.1822E-06	366.8452789235328	19.273	0.31088	19.273	19.214	19.525	0					14	9	4	0	0	0	0.50287	1	4949	4949		45.022	12.21	1	357280			5306	5547	2786	2807	5409	5409					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.84527587890625	3	366.845334	1097.51417	0.47295	0.0001735	-0.52354	-0.00019206	-0.050588	-1.8558E-05	366.845111733451	19.608	0.68721	19.608	19.508	20.195	0					30	15	4	0	0	0	0.3783	1	5955	5955		58.63	28.312	1	4486300			5307	5547	2786	2807	5410	5410					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7644653320312	2	549.764363	1097.51417	0.34081	0.00018737	0.21338	0.00011731	0.55419	0.00030467	549.764333379669	19.316	0.27711	19.316	19.215	19.492	0					16	8	5	0	0	0	0.026439	1	5198	5198		109.44	51.209	1	687050			5308	5547	2786	2807	5411	5411					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7647094726562	2	549.764363	1097.51417	1.7141	0.00094233	-1.1203	-0.00061592	0.59373	0.00032641	549.7636542452575	19.518	0.61589	19.518	19.412	20.028	0					26	12	4	0	0	0	0.039549	1	6195	6195		101.46	41.342	1	4963600			5309	5547	2786	2807	5412	5412					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.84539794921875	3	366.845334	1097.51417	0.47983	0.00017602	-0.30737	-0.00011276	0.17246	6.3267E-05	366.84521104902626	19.503	0.31317	19.503	19.396	19.71	0					12	6	2	0	0	0	0.41055	1	6185	6185		55.084	28.037	1	2809300			5310	5547	2786	2807	5413	5413					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.7647705078125	2	549.764363	1097.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.396	1	19.396	18.896	19.896	0								0	0	0	0.025135	1	5259	5259		85.862	23.754	1				5311	5547	2786	2807	5414	5414					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.764404296875	2	549.764363	1097.51417	1.156	0.00063552	-0.72051	-0.00039611	0.43548	0.00023941	549.763837993569	19.36	0.14406	19.36	19.318	19.463	0					8	3	3	0	0	0	0.034064	1	5253	5253		104.01	41.906	1	619200			5312	5547	2786	2807	5415	5415					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7647094726562	2	549.764363	1097.51417	0.5679	0.00031221	0.098482	5.4142E-05	0.66639	0.00036636	549.7643528253503	19.5	0.41704	19.5	19.442	19.859	0					17	8	4	0	0	0	0.01313	1	6049	6049		120.31	56.772	1	2642300			5313	5547	2786	2807	5416	5416					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7645874023438	2	549.764363	1097.51417	1.8242	0.0010029	-1.4001	-0.0007697	0.4241	0.00023316	549.7634810810844	19.533	0.76804	19.533	19.425	20.193	0					33	15	5	0	0	0	0.0084686	1	6044	6044		140.11	76.806	1	6024600			5314	5547	2786	2807	5417	5417					-0.030683219418278895
ATYHGSFSTKK	11	Unmodified	_ATYHGSFSTKK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	613.8120727539062	2	613.811845	1225.60914	0.16523	0.00010142	-0.15322	-9.4049E-05	0.012006	7.3693E-06	613.8116849095985	16.723	0.067432	16.723	16.683	16.75	0					6	2	3	0	0	0	0.38515	1	3866	3866		53.089	14.283	1	59984			5315	5547	2787	2808	5418	5418					0.005356115293579933
ATYHGSFSTKK	11	Unmodified	_ATYHGSFSTKK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.5436706542969	3	409.543655	1225.60914	0.053196	2.1786E-05	0.030593	1.2529E-05	0.083788	3.4315E-05	409.5437000661439	16.972	0.2189	16.972	16.913	17.132	0					5	4	2	0	0	0	0.38515	1	4968	4968		54.343	30.965	1	436600			5316	5547	2787	2808	5419	5419					0.005356115293579933
ATYHGSFSTKK	11	Unmodified	_ATYHGSFSTKK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.8121337890625	2	613.811845	1225.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.016	1	17.016	16.516	17.516	0								0	0	0	0.44926	1	4979	4979		26.063	0.48933	1				5317	5547	2787	2808	5420	5420					0.005356115293579933
ATYHGSFSTKK	11	Unmodified	_ATYHGSFSTKK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.54364013671875	3	409.543655	1225.60914	-0.507	-0.00020764	0.45878	0.00018789	-0.04822	-1.9748E-05	409.54388954978236	16.996	0.21582	16.996	16.891	17.107	0					8	4	2	0	0	0	0.68382	1	4832	4832		32.034	4.3902	1	563400			5318	5547	2787	2808	5421	5421					0.005356115293579933
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2685852050781	2	483.26875	964.522947	0.034283	1.6568E-05	-0.43823	-0.00021178	-0.40395	-0.00019522	483.26865663795587	30.415	0.22786	30.415	30.323	30.551	0					15	8	2	0	0	0	0.022698	1	9691	9691		112.41	53.629	1	95328			5319	4831;9835	2788	2809	5422	5422					0.03926651694666816
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.77001953125	2	483.26875	964.522947	0.057137	2.7612E-05	-0.49445	-0.00023895	-0.43732	-0.00021134	483.2684511532073	30.409	0.18509	30.409	30.316	30.501	0					18	7	3	0	0	0	0.13907	1	9669	9669		72.879	23.438	1	232470			5320	4831;9835	2788	2809	5423	5423					0.03926651694666816
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2685852050781	2	483.26875	964.522947	0.59559	0.00028783	-1.0458	-0.00050539	-0.45019	-0.00021756	483.2682216330538	30.671	0.3225	30.671	30.566	30.889	0					17	7	3	0	0	0	0.01942	1	11091	11091		117.81	45.934	1	980420			5321	4831;9835	2788	2809	5424	5424					0.03926651694666816
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2685852050781	2	483.26875	964.522947	-0.15206	-7.3484E-05	-0.22146	-0.00010702	-0.37352	-0.00018051	483.26864565712725	30.7	0.32361	30.7	30.553	30.877	0					19	7	4	0	0	0	0.01942	1	11083	11083		129.42	55.166	1	1262500			5322	4831;9835	2788	2809	5425	5425					0.03926651694666816
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2682189941406	2	483.26875	964.522947	-1.2784	-0.00061783	0.67845	0.00032787	-0.59999	-0.00028995	483.26904953057334	30.452	0.27783	30.452	30.346	30.624	0					21	9	3	0	0	0	0.037098	1	9993	9993		106.68	53.746	1	534760			5323	4831;9835	2788	2809	5426	5426					0.03926651694666816
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.268310546875	2	483.26875	964.522947	0.67817	0.00032774	-0.56041	-0.00027083	0.11776	5.6911E-05	483.26806934266466	30.68	0.46577	30.68	30.4	30.866	0					35	10	5	0	0	0	0.014648	1	11485	11485		138.06	79.832	1	3035700			5324	4831;9835	2788	2809	5427	5427					0.03926651694666816
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2683410644531	2	483.26875	964.522947	-0.272	-0.00013145	-0.6516	-0.0003149	-0.9236	-0.00044635	483.26845082652534	30.472	0.25825	30.472	30.335	30.594	0					15	6	3	0	0	0	0.10821	1	10358	10358		70.816	26.439	1	356930			5325	4831;9835	2788	2809	5428	5428					0.03926651694666816
ATYILEAGK	9	Unmodified	_ATYILEAGK_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000472673.5_1_10:22606461-22607284:+|nuORF;ENST00000483684.1_1_10:22606823-22607748:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2684631347656	2	483.26875	964.522947	0.87849	0.00042455	-0.30782	-0.00014876	0.57067	0.00027579	483.26795271059547	30.633	0.5061	30.633	30.325	30.831	0					33	10	5	0	0	0	0.014648	1	11368	11368		138.06	60.745	1	2568500			5326	4831;9835	2788	2809	5429	5429					0.03926651694666816
ATYINKSLS	9	Unmodified	_ATYINKSLS_					0	0	0		ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.8501281738281	3	332.850197	995.528761	-0.0072987	-2.4294E-06	-0.31988	-0.00010647	-0.32717	-0.0001089	332.85010455750233	18.036	0.21184	18.036	17.978	18.19	0					13	4	4	0	0	0	0.30841	1	5328	5328		49.536	4.5138	1	1505800			5327	1782	2789	2810	5430	5430					0.030817502063428037
ATYNGTVD	8	Unmodified	_ATYNGTVD_					0	0	0			REV__ENSG00000174327|ENST00000308027|SLC16A13	REV__ENSG00000174327|ENST00000308027|SLC16A13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.69024658203125	2	420.690333	839.366112	-0.19587	-8.2399E-05	0.096778	4.0713E-05	-0.099088	-4.1685E-05	420.6902660075149	23.45	0.15262	23.45	23.324	23.477	0					7	4	2	0	0	0	0.79567	1	6775	6775		17.365	0.89182	1	72410	+		5328	16560	2790	2811	5431	5431					-0.0599963319566541
ATYPDVNNSIK	11	Unmodified	_ATYPDVNNSIK_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.30908203125	2	611.309135	1220.60372	0.45232	0.00027651	-0.4173	-0.0002551	0.035013	2.1404E-05	611.3089212943157	29.213	0.28441	29.213	29.037	29.321	0					16	6	3	0	0	0	0.52595	1	10767	10767		42.338	9.5257	1	205740			5329	3293	2791	2812	5432	5432					0.0022388794689049973
ATYPKIWVK	9	Unmodified	_ATYPKIWVK_					0	0	0		ENSG00000243649|ENST00000425368|CFB;nc|ENSG00000243649|P00751-2|CFB	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.324462890625	2	553.32386	1104.63317	1.8208	0.0010075	-0.57068	-0.00031577	1.2501	0.00069173	553.3232627409743	32.409	0.41323	32.409	32.181	32.595	0					22	10	3	0	0	0	0.38666	1	11937	11937		35.618	14.671	1	144270			5330	7954	2792	2813	5433	5433					0.08503496753701256
ATYPMPTAK	9	Unmodified	_ATYPMPTAK_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2489318847656	2	490.249503	978.484453	0.44411	0.00021772	-0.81438	-0.00039925	-0.37028	-0.00018153	490.24907130400584	26.665	0.65947	26.665	26.34	26.999	0					22	15	2	0	0	0	0.53064	2	9349	9147;9349		29.17	29.17	1	101870			5331	154	2793	2814	5434;5435	5435					-0.0056497721150208235
ATYPYQVVR	9	Unmodified	_ATYPYQVVR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7940673828125	2	548.792924	1095.57129	1.16	0.0006366	-0.22118	-0.00012138	0.93881	0.00051521	548.7925644230204	31.858	0.38158	31.858	31.666	32.048	0					19	11	2	0	0	0	0.53083	1	11040	11040		29.15	1.2673	1	43268			5332	5743	2794	2815	5436	5436					0.027331453345595946
ATYPYQVVR	9	Unmodified	_ATYPYQVVR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7930908203125	2	548.792924	1095.57129	1.8496	0.001015	-1.2222	-0.00067073	0.6274	0.00034431	548.7920269608998	32.024	0.56955	32.024	31.751	32.321	0					26	11	3	0	0	0	0.21263	1	12040	12040		60.118	22.959	1	527200			5333	5743	2794	2815	5437	5437					0.027331453345595946
ATYQTTLLH	9	Unmodified	_ATYQTTLLH_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2772827148438	2	524.277106	1046.53966	0.4005	0.00020997	0.21682	0.00011367	0.61732	0.00032364	524.2771761723066	31.788	0.23415	31.788	31.699	31.933	0					16	9	2	0	0	0	0.30951	1	10554	10554		49.442	18.938	1	268710			5334	934	2795	2816	5438	5438					0.01825152580613576
ATYQTTLLH	9	Unmodified	_ATYQTTLLH_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2799072265625	2	524.277106	1046.53966	1.7843	0.00093545	-0.2351	-0.00012326	1.5492	0.00081219	524.2770107026562	31.996	0.6708	31.996	31.702	32.372	0					18	14	2	0	0	0	0.047855	1	12113	12113		96.034	41.269	1	2140100			5335	934	2795	2816	5439	5439					0.01825152580613576
ATYQTTLLH	9	Unmodified	_ATYQTTLLH_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.27734375	2	524.277106	1046.53966	0.07841	4.1108E-05	0.49376	0.00025887	0.57217	0.00029997	524.2774236344626	32.024	0.34732	32.024	31.878	32.225	0					22	7	4	0	0	0	0.02953	1	12121	12121		109.48	61.821	1	1608600			5336	934	2795	2816	5440	5440					0.01825152580613576
ATYQTTLLH	9	Unmodified	_ATYQTTLLH_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2779541015625	2	524.277106	1046.53966	1.135	0.00059506	0.45248	0.00023722	1.5875	0.00083228	524.2772488278583	31.781	0.15117	31.781	31.746	31.897	0					8	5	2	0	0	0	0.38666	1	10992	10992		42.864	14.982	1	170890			5337	934	2795	2816	5441	5441					0.01825152580613576
ATYQTTLLH	9	Unmodified	_ATYQTTLLH_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2774047851562	2	524.277106	1046.53966	1.6264	0.00085269	-0.066243	-3.473E-05	1.5602	0.00081796	524.2766235450517	32.01	0.26807	32.01	31.902	32.17	0					18	5	4	0	0	0	0.0080613	1	12016	12016		145.16	78.726	1	675120			5338	934	2795	2816	5442	5442					0.01825152580613576
ATYREGMTK	9	Unmodified	_ATYREGMTK_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.760986328125	2	528.760766	1055.50698	0.71897	0.00038016	-0.04618	-2.4418E-05	0.67279	0.00035575	528.7606959008428	17.098	0.16998	17.098	16.988	17.158	0					8	3	3	0	0	0	0.13907	1	4880	4880		70.399	15.622	1	1011400			5339	4494	2796	2817	5443	5443					-0.018553778138993948
ATYREGMTK	9	Unmodified	_ATYREGMTK_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7611083984375	2	528.760766	1055.50698	1.6295	0.00086161	-0.92725	-0.00049029	0.70223	0.00037131	528.7604631650248	17.081	0.27153	17.081	17.022	17.293	0					9	5	3	0	0	0	0.13109	1	4876	4876		72.243	22.802	1	870380			5340	4494	2796	2817	5444	5444					-0.018553778138993948
ATYSEDGLLK	10	Unmodified	_ATYSEDGLLK_					0	0	0		nc|ENSG00000122692|Q2TAY7-2|SMU1;ENSG00000122692|ENST00000397149|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7800903320312	2	548.779679	1095.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.536	1	32.536	32.036	33.036	0								0	0	0	0.1345	1	12374	12374		72.879	16.158	1				5341	3280	2797	2818	5445	5445					0.0008541165257156536
ATYSVGMQK	9	Oxidation (M)	_ATYSVGM(Oxidation (M))QK_		ATYSVGM(1)QK		ATYSVGM(67)QK	0	0	1		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7419128417969	2	500.742042	999.469531	-0.046575	-2.3322E-05	-1.5772	-0.00078975	-1.6237	-0.00081307	500.74198681466424	19.461	0.4815	19.461	19.284	19.766	0					20	14	2	0	0	0	0.15163	1	5015	5015		67.494	16.158	1	463220			5342	3751	2798	2819	5446	5446		156			-0.030224690794852904
ATYSVGMQK	9	Oxidation (M)	_ATYSVGM(Oxidation (M))QK_		ATYSVGM(1)QK		ATYSVGM(88)QK	0	0	1		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2405090332031	2	500.742042	999.469531	-0.13572	-6.796E-05	-1.929	-0.00096595	-2.0648	-0.0010339	501.2418062300861	19.803	0.91667	19.803	19.647	20.564	0					36	20	2	0	0	0	0.07136	2	6052	6018;6052		87.696	36.361	1	2142100			5343	3751	2798	2819	5447;5448	5448		156			-0.030224690794852904
ATYSVGMQK	9	Oxidation (M)	_ATYSVGM(Oxidation (M))QK_		ATYSVGM(1)QK		ATYSVGM(53)QK	0	0	1		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.74212646484375	2	500.742042	999.469531	-0.99433	-0.00049791	2.4904	0.001247	1.496	0.00074913	500.7429270396126	19.486	0.31041	19.486	19.349	19.66	0					11	9	2	0	0	0	0.27249	1	5247	5247		52.937	13.684	1	99244			5344	3751	2798	2819	5449	5449		156			-0.030224690794852904
ATYSVGMQK	9	Oxidation (M)	_ATYSVGM(Oxidation (M))QK_		ATYSVGM(1)QK		ATYSVGM(100)QK	0	0	1		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7420654296875	2	500.742042	999.469531	-2.1182	-0.0010607	1.2375	0.00061965	-0.88074	-0.00044103	500.74326272617526	19.484	0.39674	19.484	19.306	19.703	0					24	9	4	0	0	0	0.035062	1	5287	5287		104.06	51.758	1	399730			5345	3751	2798	2819	5450	5450		156			-0.030224690794852904
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7442626953125	2	492.744585	983.474617	-0.071799	-3.5378E-05	-0.54857	-0.00027031	-0.62037	-0.00030568	492.74450563640823	24.061	0.48837	24.061	23.946	24.435	0					46	15	5	0	0	0	0.0097668	1	7021	7021		141.52	76.055	1	7848800			5346	3751	2798	2820	5451	5451					-0.017781652168764595
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7443542480469	2	492.744585	983.474617	-0.52415	-0.00025827	0.095969	4.7288E-05	-0.42819	-0.00021099	492.744938530835	24.348	0.85532	24.348	24.204	25.06	0					59	20	5	0	0	0	6.1641E-13	1	8171	8171		231.3	111.74	1	49930000			5347	3751	2798	2820	5452	5452					-0.017781652168764595
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7444763183594	2	492.744585	983.474617	-1.266	-0.00062383	0.47421	0.00023366	-0.79182	-0.00039016	492.7449645167728	24.093	0.39122	24.093	23.991	24.382	0					41	12	5	0	0	0	0.0059092	1	7302	7302		154.12	89.911	1	4715500			5348	3751	2798	2820	5453	5453					-0.017781652168764595
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.74456787109375	2	492.744585	983.474617	-1.5026	-0.00074041	0.89348	0.00044026	-0.60914	-0.00030015	492.74520014386695	24.085	0.26982	24.085	23.979	24.249	0					20	8	3	0	0	0	3.2654E-05	1	7311	7311		200.16	112.4	1	1677500			5349	3751	2798	2820	5454	5454					-0.017781652168764595
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.74432373046875	2	492.744585	983.474617	0.60567	0.00029844	-1.1891	-0.00058594	-0.58347	-0.0002875	492.74437075667413	24.302	0.81127	24.302	24.196	25.008	0					46	16	4	0	0	0	3.1379E-08	1	8478	8478		215.39	108.98	1	30493000			5350	3751	2798	2820	5455	5455					-0.017781652168764595
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7447814941406	2	492.744585	983.474617	-0.74201	-0.00036562	0.085703	4.223E-05	-0.65631	-0.00032339	492.7448564765817	24.286	0.51435	24.286	24.18	24.694	0					27	10	5	0	0	0	5.4201E-05	1	8470	8470		195.06	118.29	1	7096000			5351	3751	2798	2820	5456	5456					-0.017781652168764595
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7443542480469	2	492.744585	983.474617	-2.612	-0.0012871	1.7392	0.00085696	-0.87287	-0.0004301	492.74561806649155	24.119	0.48379	24.119	24.023	24.506	0					34	11	5	0	0	0	0.0012088	1	7459	7459		180.87	109.57	1	6618200			5352	3751	2798	2820	5457	5457					-0.017781652168764595
ATYSVGMQK	9	Unmodified	_ATYSVGMQK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7452697753906	2	492.744585	983.474617	2.7479	0.001354	-2.8413	-0.0014	-0.093365	-4.6005E-05	492.74372828289347	24.254	0.84817	24.254	24.147	24.996	0					58	17	6	0	0	0	3.1379E-08	1	8349	8349		215.39	108.98	1	38290000			5353	3751	2798	2820	5458	5458					-0.017781652168764595
ATYTLFSHA	9	Unmodified	_ATYTLFSHA_					0	0	0		CDH1|p.F462Lfs*19|1|0.16|ENSG00000039068|chr16:68815577-68815577|T/-|frameshift_variant;CDH1|p.N315Kfs*6|1|0.32|ENSG00000039068|chr16:68811790-68811791|-/A|frameshift_variant;nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	CDH1|p.F462Lfs*19|1|0.16|ENSG00000039068|chr16:68815577-68815577|T/-|frameshift_variant;nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.749267578125	2	505.750724	1009.4869	-0.074866	-3.7864E-05	-3.872	-0.0019583	-3.9469	-0.0019961	505.74887643707433	22.716	0.16188	22.716	22.65	22.812	0					8	5	2	0	0	0	0.32741	1	6469	6469		47.916	1.9434	1	111080			5354	1185;443	2799	2821	5459	5459					-0.017468054821961232
ATYVQPRRK	9	Unmodified	_ATYVQPRRK_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2;CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.8253173828125	2	559.825089	1117.63563	1.7875	0.0010007	-1.4436	-0.00080816	0.34386	0.0001925	559.824134980759	15.087	0.26549	15.087	14.977	15.242	0					13	5	4	0	0	0	0.24334	1	4068	4068		49.442	10.189	1	921580			5355	5844	2800	2822	5460	5460					0.08151345211376793
ATYWGMKIK	9	Unmodified	_ATYWGMKIK_					0	0	0		ENSG00000166743|ENST00000520010|ACSM1	ENSG00000166743|ENST00000520010|ACSM1	ENSG00000166743|ENST00000520010|ACSM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2951049804688	2	549.294245	1096.57394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.813	1	31.813	31.313	32.313	0								0	0	0	0.2591	1	10242	10242		42.396	7.2441	1				5356	5923	2801	2823	5461	5461					0.029512774678551068
ATYYGAFIKK	10	Unmodified	_ATYYGAFIKK_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4;TNIK|p.N93Efs*7|1|0.3|ENSG00000154310|chr3:171211146-171211147|-/T|frameshift_variant;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;MAP4K4|p.N722Mfs*3|1|0.46|ENSG00000071054|chr2:101867251-101867251|A/-|frameshift_variant;MINK1|p.I705Sfs*101|1|0.26|ENSG00000141503|chr17:4892425-4892425|A/-|frameshift_variant;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant;TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant;TNIK|p.E1253Kfs*13|1|0.04|ENSG00000154310|chr3:171066678-171066678|C/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.K261Nfs*11|1|0.25|ENSG00000154310|chr3:171167261-171167261|T/-|frameshift_variant;TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant	nc|ENSG00000071054|O95819-4|MAP4K4;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.8816223144531	3	387.881608	1160.623	0.86163	0.00033421	-1.6732	-0.00064902	-0.8116	-0.0003148	387.88078405323535	31.088	0.70699	31.088	30.877	31.584	0					32	17	3	0	0	0	0.54861	1	11271	11271		40.058	11.481	1	550770			5357	5084;4451;1466	2802	2824	5462	5462					0.04910889028451493
ATYYGAFIKK	10	Unmodified	_ATYYGAFIKK_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4;TNIK|p.N93Efs*7|1|0.3|ENSG00000154310|chr3:171211146-171211147|-/T|frameshift_variant;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;MAP4K4|p.N722Mfs*3|1|0.46|ENSG00000071054|chr2:101867251-101867251|A/-|frameshift_variant;MINK1|p.I705Sfs*101|1|0.26|ENSG00000141503|chr17:4892425-4892425|A/-|frameshift_variant;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant;TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant;TNIK|p.E1253Kfs*13|1|0.04|ENSG00000154310|chr3:171066678-171066678|C/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.K261Nfs*11|1|0.25|ENSG00000154310|chr3:171167261-171167261|T/-|frameshift_variant;TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant	nc|ENSG00000071054|O95819-4|MAP4K4;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.8814392089844	3	387.881608	1160.623	0.16436	6.3754E-05	-0.44653	-0.0001732	-0.28217	-0.00010945	387.8813710057922	31.1	0.5049	31.1	30.909	31.414	0					19	11	4	0	0	0	0.65051	1	11684	11684		28.081	0	1	639030			5358	5084;4451;1466	2802	2824	5463	5463					0.04910889028451493
ATYYGAFIKK	10	Unmodified	_ATYYGAFIKK_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4;TNIK|p.N93Efs*7|1|0.3|ENSG00000154310|chr3:171211146-171211147|-/T|frameshift_variant;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;MAP4K4|p.N722Mfs*3|1|0.46|ENSG00000071054|chr2:101867251-101867251|A/-|frameshift_variant;MINK1|p.I705Sfs*101|1|0.26|ENSG00000141503|chr17:4892425-4892425|A/-|frameshift_variant;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant;TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant;TNIK|p.E1253Kfs*13|1|0.04|ENSG00000154310|chr3:171066678-171066678|C/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.K261Nfs*11|1|0.25|ENSG00000154310|chr3:171167261-171167261|T/-|frameshift_variant;TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant	nc|ENSG00000071054|O95819-4|MAP4K4;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.318603515625	2	581.318774	1160.623	-0.34689	-0.00020166	0.69268	0.00040267	0.34579	0.00020101	581.3189119470069	31.117	0.24545	31.117	31.012	31.257	0					12	5	3	0	0	0	0.12383	1	11691	11691		79.713	36.848	1	260920			5359	5084;4451;1466	2802	2824	5464	5464					0.04910889028451493
AVAAAKVSSL	10	Unmodified	_AVAAAKVSSL_					0	0	0			REV__ENSG00000215474|ENST00000425639|SKOR2	REV__ENSG00000215474|ENST00000425639|SKOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7764892578125	2	458.776742	915.538931	0.72203	0.00033125	-1.4371	-0.00065933	-0.71511	-0.00032808	458.7761971572644	37.39	0.17028	37.39	37.328	37.498	0					11	5	3	0	0	0	0.39566	1	14629	14629		56.721	5.5284	1	163610	+		5360	17599	2803	2825	5465	5465					0.07778357931567825
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.768798828125	2	481.768917	961.523281	0.081797	3.9407E-05	-0.86455	-0.00041651	-0.78275	-0.00037711	481.7684167577127	28.85	0.16904	28.85	28.78	28.949	0					9	5	2	0	0	0	0.07136	1	9038	9038		87.696	28.914	1	168840			5361	7052	2804	2826	5466	5466					0.04098071414523474
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.768798828125	2	481.768917	961.523281	-0.11198	-5.3947E-05	-0.048763	-2.3493E-05	-0.16074	-7.7439E-05	481.7688843069333	29.13	0.2502	29.13	29.034	29.285	0					14	6	3	0	0	0	0.037924	1	10372	10372		101.25	31.625	1	961740			5362	7052	2804	2826	5467	5467					0.04098071414523474
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.76873779296875	2	481.768917	961.523281	-1.3342	-0.0006428	0.35896	0.00017294	-0.97528	-0.00046986	481.7693215524168	28.885	0.19888	28.885	28.798	28.996	0					10	7	2	0	0	0	0.21263	1	9348	9348		60.118	10.677	1	246580			5363	7052	2804	2826	5468	5468					0.04098071414523474
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7685852050781	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.128	1	29.128	28.628	29.628	0								0	0	0	0.018912	1	10751	10751		101.25	33.759	1				5364	7052	2804	2826	5469	5469					0.04098071414523474
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7685852050781	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.95	1	28.95	28.45	29.45	0								0	0	0	0.23445	1	9677	9677		45.972	5.1941	1				5365	7052	2804	2826	5470	5470					0.04098071414523474
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7687072753906	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.929	1	28.929	28.429	29.429	0								0	0	0	0.040385	1	9668	9668		90.601	16.346	1				5366	7052	2804	2826	5471	5471					0.04098071414523474
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7685852050781	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.126	1	29.126	28.626	29.626	0								0	0	0	0.16453	1	10633	10633		56.434	15.656	1				5367	7052	2804	2826	5472	5472					0.04098071414523474
AVAAFQVEK	9	Unmodified	_AVAAFQVEK_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7688903808594	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.108	1	29.108	28.608	29.608	0								0	0	0	0.029433	1	10624	10624		96.034	30.568	1				5368	7052	2804	2826	5473	5473					0.04098071414523474
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;CCDC107|p.A74V|1|0.5|ENSG00000159884|chr9:35658690-35658690|C/T|missense_variant;nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2911071777344	2	491.292028	980.569503	-0.062866	-3.0886E-05	-0.49592	-0.00024364	-0.55879	-0.00027453	491.29165147879047	40.705	0.11933	40.705	40.616	40.735	0					10	7	2	0	0	0	0.4966	1	13135	13135		33.516	6.7195	1	46582			5369	5333	2805	2827	5474	5474					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;CCDC107|p.A74V|1|0.5|ENSG00000159884|chr9:35658690-35658690|C/T|missense_variant;nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2919616699219	2	491.292028	980.569503	0.81033	0.00039811	-1.2402	-0.00060929	-0.42985	-0.00021118	491.2914615780183	40.988	0.23712	40.988	40.914	41.152	0					14	10	2	0	0	0	0.12239	1	15583	15583		92.191	37.426	1	177780			5370	5333	2805	2827	5475	5475					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;CCDC107|p.A74V|1|0.5|ENSG00000159884|chr9:35658690-35658690|C/T|missense_variant;nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2912292480469	2	491.292028	980.569503	-0.52673	-0.00025878	0.070863	3.4814E-05	-0.45586	-0.00022396	491.2919276604752	41.006	0.18206	41.006	40.938	41.12	0					20	8	3	0	0	0	0.13267	1	15589	15589		88.643	44.112	1	361310			5371	5333	2805	2827	5476	5476					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;CCDC107|p.A74V|1|0.5|ENSG00000159884|chr9:35658690-35658690|C/T|missense_variant;nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2918701171875	2	491.292028	980.569503	-1.2598	-0.00061891	1.0972	0.00053904	-0.16257	-7.9869E-05	491.29252354911404	40.779	0.093796	40.779	40.726	40.82	0					10	5	2	0	0	0	0.12239	1	13620	13620		79.939	25.175	1	146940			5372	5333	2805	2827	5477	5477					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;CCDC107|p.A74V|1|0.5|ENSG00000159884|chr9:35658690-35658690|C/T|missense_variant;nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2919006347656	2	491.292028	980.569503	0.58477	0.00028729	-0.99954	-0.00049106	-0.41477	-0.00020377	491.2914789811256	40.955	0.39944	40.955	40.804	41.203	0					26	11	3	0	0	0	0.019882	1	16098	16098		148.21	82.309	1	748660			5373	5333	2805	2827	5478	5478					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;CCDC107|p.A74V|1|0.5|ENSG00000159884|chr9:35658690-35658690|C/T|missense_variant;nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.7937927246094	2	491.292028	980.569503	-0.073469	-3.6095E-05	0.66499	0.00032671	0.59152	0.00029061	491.2924377471609	40.752	0.14983	40.752	40.67	40.819	0					12	8	2	0	0	0	0.25716	1	14456	14456		57.811	32.361	1	82446			5374	5333	2805	2827	5479	5479					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;CCDC107|p.A74V|1|0.5|ENSG00000159884|chr9:35658690-35658690|C/T|missense_variant;nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.291748046875	2	491.292028	980.569503	0.80585	0.00039591	-1.1641	-0.00057193	-0.35828	-0.00017602	491.2914610985621	40.934	0.53458	40.934	40.748	41.283	0					21	10	4	0	0	0	0.07136	1	16237	16237		106.42	51.651	1	1071200			5375	5333	2805	2827	5480	5480					0.07844136316623462
AVAAKKAPPE	10	Unmodified	_AVAAKKAPPE_					0	0	0			REV__ENST00000495527.5_2_1:203819629-203821524:+|nuORF	REV__ENST00000495527.5_2_1:203819629-203821524:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.291748046875	2	491.290017	980.565481	2.6956	0.0013243	1.1434	0.00056174	3.839	0.0018861	491.29047617164724	40.917	0.36811	40.917	40.735	41.103	0					18	6	4	0	0	0	0.56931	1	16231	16231		37.812	37.812	1	1089000	+		5376	13074	2806	2828	5481	5481					0.07442046822893644
AVAATAVTSPV	11	Unmodified	_AVAATAVTSPV_					0	0	0		ENST00000429709.6_1_3:179280735-179280855:+|nuORF	ENST00000429709.6_1_3:179280735-179280855:+|nuORF	ENST00000429709.6_1_3:179280735-179280855:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7795715332031	2	493.779482	985.544411	-0.049142	-2.4266E-05	-0.20728	-0.00010235	-0.25642	-0.00012662	493.7793395496345	27.577	0.16126	27.577	27.473	27.634	0					6	3	2	0	0	0	0.47622	1	10019	10019		45.972	8.1607	1	118290			5377	9477	2807	2829	5482	5482					0.05106036723395846
AVAAVAARR	9	Unmodified	_AVAAVAARR_					0	0	0		GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant;nc|ENSG00000089597|Q14697-3|GANAB;ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.7746276855469	2	442.774868	883.535184	-0.28997	-0.00012839	-0.29781	-0.00013186	-0.58778	-0.00026026	442.774744071506	16.535	0.19528	16.535	16.437	16.632	0					13	6	3	0	0	0	0.0027134	1	3784	3784		170.31	31.834	1	1394000			5378	1817	2808	2830	5483	5483					0.08875732948365567
AVAAVAARR	9	Unmodified	_AVAAVAARR_					0	0	0		GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant;nc|ENSG00000089597|Q14697-3|GANAB;ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7746887207031	2	442.774868	883.535184	-0.345	-0.00015276	-0.14983	-6.634E-05	-0.49483	-0.0002191	442.7748609698507	16.817	0.37448	16.817	16.728	17.102	0					21	9	4	0	0	0	0.00049975	1	4636	4636		187.93	24.088	1	6174900			5379	1817	2808	2830	5484	5484					0.08875732948365567
AVAAVAARR	9	Unmodified	_AVAAVAARR_					0	0	0		GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant;nc|ENSG00000089597|Q14697-3|GANAB;ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7747497558594	2	442.774868	883.535184	0.048449	2.1452E-05	-0.43991	-0.00019478	-0.39146	-0.00017333	442.7747188944932	16.752	0.24898	16.752	16.647	16.896	0					13	5	3	0	0	0	0.00049975	1	4856	4856		187.93	24.088	1	4738900			5380	1817	2808	2830	5485	5485					0.08875732948365567
AVAAVAEYSR	10	Unmodified	_AVAAVAEYSR_					0	0	0			REV__RBM4B|p.A235V|1|0.37|ENSG00000173914|chr11:66669000-66669000|G/A|missense_variant	REV__RBM4B|p.A235V|1|0.37|ENSG00000173914|chr11:66669000-66669000|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.185546875	3	346.185579	1035.53491	-0.035906	-1.243E-05	0.13645	4.7236E-05	0.10054	3.4806E-05	346.1856055136721	21.996	0.31782	21.996	21.936	22.254	0					12	6	3	0	0	0	0.71484	1	7264	7264		19.263	0.15916	1	348200	+		5381	21451	2809	2831	5486	5486					0.018562684378366612
AVAAVARAR	9	Unmodified	_AVAAVARAR_					0	0	0			REV__ENST00000358154.7_1_16:21610933-21611029:+|nuORF	REV__ENST00000358154.7_1_16:21610933-21611029:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.7752990722656	2	442.774868	883.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.514	1	16.514	16.014	17.014	0								0	0	0	0.013769	1	3978	3978		163.84	9.9595	1		+		5382	18538	2810	2832	5487	5487					0.08875732948365567
AVADAQKRK	9	Unmodified	_AVADAQKRK_					0	0	0		ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF;ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7901306152344	2	493.790715	985.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.183	1	11.183	10.683	11.683	0								0	0	0	0.22075	1	2139	2139		40.778	18.818	1				5383	5410	2811	2833	5488	5488					0.07351680911665426
AVADAQKRK	9	Unmodified	_AVADAQKRK_					0	0	0		ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF;ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.791015625	2	493.790715	985.566878	0.64136	0.0003167	-0.57898	-0.00028589	0.062386	3.0806E-05	493.7904548098272	11.23	0.11366	11.23	11.158	11.272	0					8	4	2	0	0	0	0.011389	1	2252	2252		110.12	5.3733	1	493720			5384	5410	2811	2833	5489	5489					0.07351680911665426
AVADAQKRK	9	Unmodified	_AVADAQKRK_					0	0	0		ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF;ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7909240722656	2	493.790715	985.566878	2.781	0.0013732	-2.3258	-0.0011484	0.4552	0.00022478	493.78971815166346	11.22	0.05541	11.22	11.183	11.238	0					6	3	2	0	0	0	0.10506	1	2155	2155		52.937	3.4952	1	91904			5385	5410	2811	2833	5490	5490					0.07351680911665426
AVADAVIEK	9	Unmodified	_AVADAVIEK_					0	0	0		ENSG00000116874|ENST00000235521|WARS2;ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENSG00000116874|ENST00000235521|WARS2;ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENST00000369426.9_1_1:119575536-119588262:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.26068115234375	2	458.260925	914.507297	-0.15597	-7.1476E-05	-0.43666	-0.0002001	-0.59263	-0.00027158	458.2607027008204	25.763	0.54138	25.763	25.459	26	0					12	9	2	0	0	0	0.011389	1	9169	9169		138.06	41.872	1	3181400			5386	3010;8942	2812	2834	5491	5491					0.04662365177614447
AVADAVIEK	9	Unmodified	_AVADAVIEK_					0	0	0		ENSG00000116874|ENST00000235521|WARS2;ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENSG00000116874|ENST00000235521|WARS2;ENST00000369426.9_1_1:119575536-119588262:-|nuORF	ENST00000369426.9_1_1:119575536-119588262:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2613525390625	2	458.260925	914.507297	-0.017901	-8.2031E-06	-0.50415	-0.00023103	-0.52205	-0.00023924	458.26072691898645	25.554	0.3639	25.554	25.357	25.72	0					22	9	3	0	0	0	0.02953	1	8124	8124		109.48	35.223	1	1136900			5387	3010;8942	2812	2834	5492	5492					0.04662365177614447
AVADKVHLMYK	11	Unmodified	_AVADKVHLMYK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.5686950683594	3	425.569036	1273.68528	-0.73878	-0.0003144	-0.025591	-1.0891E-05	-0.76437	-0.00032529	425.5691322729881	27.205	0.3459	27.205	27.114	27.46	0					19	8	4	0	0	0	0.36734	1	9482	9482		55.084	27.002	1	672050			5388	3210	2813	2835	5493	5493					0.05938292105133769
AVADKVHLMYK	11	Unmodified	_AVADKVHLMYK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.56903076171875	3	425.569036	1273.68528	-1.0657	-0.00045352	1.0119	0.00043061	-0.053826	-2.2907E-05	425.56948596877135	26.992	0.2075	26.992	26.9	27.108	0					13	7	3	0	0	0	0.59204	1	8547	8547		37.508	12.382	1	145160			5389	3210	2813	2835	5494	5494					0.05938292105133769
AVADKVHLMYK	11	Unmodified	_AVADKVHLMYK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.56903076171875	3	425.569036	1273.68528	0.90297	0.00038428	-1.4272	-0.00060739	-0.52427	-0.00022311	425.5685842198451	27.212	0.46515	27.212	27.104	27.569	0					28	9	4	0	0	0	0.29287	1	9844	9844		63.426	34.85	1	1834000			5390	3210	2813	2835	5495	5495					0.05938292105133769
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2609558105469	2	452.260925	902.507297	-0.022304	-1.0087E-05	-1.8155	-0.00082107	-1.8378	-0.00083116	452.2598472086866	26.165	0.17843	26.165	26.086	26.264	0					9	6	2	0	0	0	0.40353	1	7912	7912		41.427	0.64845	1	108410			5391	6453	2814	2836	5496	5496					0.05214365177619129
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2615966796875	2	452.260925	902.507297	3.8521	0.0017422	-3.4827	-0.0015751	0.36945	0.00016709	452.25924798304885	26.158	0.10486	26.158	26.094	26.199	0					5	3	2	0	0	0	0.30841	1	8198	8198		49.536	3.5841	1	40258			5392	6453	2814	2836	5497	5497					0.05214365177619129
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2606201171875	2	452.260925	902.507297	-0.1146	-5.1827E-05	-0.63792	-0.0002885	-0.75251	-0.00034033	452.26056066664927	26.435	0.16758	26.435	26.326	26.493	0					9	3	3	0	0	0	0.11898	1	9471	9471		75.043	8.614	1	743780			5393	6453	2814	2836	5498	5498					0.05214365177619129
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2604064941406	2	452.260925	902.507297	0.37894	0.00017138	-1.1362	-0.00051388	-0.7573	-0.0003425	452.2601029400255	26.236	0.14293	26.236	26.133	26.276	0					5	3	2	0	0	0	0.21263	1	8423	8423		60.118	8.9256	1	53154			5394	6453	2814	2836	5499	5499					0.05214365177619129
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2604675292969	2	452.260925	902.507297	-0.41086	-0.00018582	-0.4677	-0.00021152	-0.87856	-0.00039734	452.2605558824076	26.409	0.21872	26.409	26.25	26.469	0					10	4	3	0	0	0	0.085655	1	9315	9315		82.75	13.123	1	522140			5395	6453	2814	2836	5500	5500					0.05214365177619129
AVAEASKER	9	Unmodified	_AVAEASKER_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB;CDC42BPB|p.N918Tfs*5|1|0.27|ENSG00000198752|chr14:102963129-102963129|T/-|frameshift_variant;CDC42BPB|p.L928Ffs*26|1|0.05|ENSG00000198752|chr14:102963098-102963099|-/A|frameshift_variant;CDC42BPB|p.Q1073Rfs*38|2|0.31|ENSG00000198752|chr14:102950558-102950558|G/-|frameshift_variant	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.75872802734375	2	480.759081	959.503609	-0.16267	-7.8204E-05	-0.45566	-0.00021906	-0.61833	-0.00029727	480.7588503385051	13.376	0.16372	13.376	13.292	13.456	0					8	4	2	0	0	0	0.11411	1	3034	3034		76.17	10.704	1	1260400			5396	7601	2815	2837	5501	5501					0.022236954037680334
AVAEASKER	9	Unmodified	_AVAEASKER_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB;CDC42BPB|p.N918Tfs*5|1|0.27|ENSG00000198752|chr14:102963129-102963129|T/-|frameshift_variant;CDC42BPB|p.L928Ffs*26|1|0.05|ENSG00000198752|chr14:102963098-102963099|-/A|frameshift_variant;CDC42BPB|p.Q1073Rfs*38|2|0.31|ENSG00000198752|chr14:102950558-102950558|G/-|frameshift_variant	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7589416503906	2	480.759081	959.503609	-0.30811	-0.00014813	0.051172	2.4601E-05	-0.25694	-0.00012353	480.75892525903936	13.162	0.059494	13.162	13.121	13.181	0					5	3	2	0	0	0	0.16806	1	2682	2682		65.465	10.689	1	120390			5397	7601	2815	2837	5502	5502					0.022236954037680334
AVAEASKER	9	Unmodified	_AVAEASKER_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB;CDC42BPB|p.N918Tfs*5|1|0.27|ENSG00000198752|chr14:102963129-102963129|T/-|frameshift_variant;CDC42BPB|p.L928Ffs*26|1|0.05|ENSG00000198752|chr14:102963098-102963099|-/A|frameshift_variant;CDC42BPB|p.Q1073Rfs*38|2|0.31|ENSG00000198752|chr14:102950558-102950558|G/-|frameshift_variant	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7588195800781	2	480.759081	959.503609	-0.51545	-0.00024781	0.076449	3.6754E-05	-0.439	-0.00021105	480.7590650511792	13.372	0.10597	13.372	13.313	13.419	0					6	2	3	0	0	0	0.011389	1	3246	3246		138.06	44.867	1	862520			5398	7601	2815	2837	5503	5503					0.022236954037680334
AVAEDGGLKK	10	Unmodified	_AVAEDGGLKK_					0	0	0		ENST00000529076.1_1_11:102960023-102962823:-|nuORF;ENSG00000137692|ENST00000260247|DCUN1D5	ENST00000529076.1_1_11:102960023-102962823:-|nuORF	ENST00000529076.1_1_11:102960023-102962823:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2774658203125	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.588	1	16.588	16.088	17.088	0								0	0	0	0.19992	1	3804	3804		64.207	8.7031	1				5399	4183	2816	2838	5504	5504					0.045851525806369864
AVAEDGGLKK	10	Unmodified	_AVAEDGGLKK_					0	0	0		ENST00000529076.1_1_11:102960023-102962823:-|nuORF;ENSG00000137692|ENST00000260247|DCUN1D5	ENST00000529076.1_1_11:102960023-102962823:-|nuORF	ENST00000529076.1_1_11:102960023-102962823:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.27685546875	2	494.277106	986.53966	-0.45628	-0.00022553	0.010667	5.2725E-06	-0.44561	-0.00022025	494.27715131336515	16.854	0.20921	16.854	16.691	16.9	0					6	5	2	0	0	0	0.12763	1	4656	4656		90.601	33.88	1	630730			5400	4183	2816	2838	5505	5505					0.045851525806369864
AVAEGAKNVMK	11	Unmodified	_AVAEGAKNVMK_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3057861328125	2	559.305341	1116.59613	0.51586	0.00028852	-0.1314	-7.3494E-05	0.38446	0.00021503	559.3054304499371	19.604	0.1536	19.604	19.508	19.661	0					8	3	3	0	0	0	0.084047	1	5936	5936		93.598	10.847	1	542990			5401	1367	2817	2839	5506	5506					0.04249457145624547
AVAEGAKNVMK	11	Unmodified	_AVAEGAKNVMK_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3056030273438	2	559.305341	1116.59613	-0.45588	-0.00025497	0.74995	0.00041945	0.29407	0.00016448	559.3058705655203	19.273	0.10931	19.273	19.203	19.312	0					11	3	4	0	0	0	0.057669	1	5179	5179		101.46	35.031	1	565500			5402	1367	2817	2839	5507	5507					0.04249457145624547
AVAEGAKNVMK	11	Unmodified	_AVAEGAKNVMK_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3058471679688	2	559.305341	1116.59613	-0.099416	-5.5604E-05	0.69115	0.00038656	0.59173	0.00033096	559.3059213275027	19.455	0.16293	19.455	19.396	19.559	0					9	3	4	0	0	0	7.2693E-05	1	6162	6162		148.69	47.09	1	2582400			5403	1367	2817	2839	5508	5508					0.04249457145624547
AVAEGAKNVVK	11	Unmodified	_AVAEGAKNVVK_					0	0	0		PKN3|p.C465Afs*43|1|0.27|ENSG00000160447|chr9:128714271-128714271|C/-|frameshift_variant;PKN3|p.Y778Tfs*82|1|0.29|ENSG00000160447|chr9:128719968-128719968|C/-|frameshift_variant;ENSG00000160447|ENST00000291906|PKN3	PKN3|p.C465Afs*43|1|0.27|ENSG00000160447|chr9:128714271-128714271|C/-|frameshift_variant	PKN3|p.C465Afs*43|1|0.27|ENSG00000160447|chr9:128714271-128714271|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.3197021484375	2	543.319306	1084.62406	-0.18316	-9.9516E-05	1.0025	0.00054467	0.81933	0.00044516	543.3196562527007	18.142	0.06739	18.142	18.082	18.15	0					6	2	3	0	0	0	0.2472	1	4687	4687		68.626	24.249	1	135010			5404	5366	2818	2840	5509	5509					0.08513103397376653
AVAEGAKNVVK	11	Unmodified	_AVAEGAKNVVK_					0	0	0		PKN3|p.C465Afs*43|1|0.27|ENSG00000160447|chr9:128714271-128714271|C/-|frameshift_variant;PKN3|p.Y778Tfs*82|1|0.29|ENSG00000160447|chr9:128719968-128719968|C/-|frameshift_variant;ENSG00000160447|ENST00000291906|PKN3	PKN3|p.C465Afs*43|1|0.27|ENSG00000160447|chr9:128714271-128714271|C/-|frameshift_variant	PKN3|p.C465Afs*43|1|0.27|ENSG00000160447|chr9:128714271-128714271|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.319580078125	2	543.319306	1084.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.41	1	18.41	17.91	18.91	0								0	0	0	0.10092	1	5645	5645		76.17	1.9146	1				5405	5366	2818	2840	5510	5510					0.08513103397376653
AVAELCSQLKR	11	Carbamidomethyl (C)	_AVAELC(Carbamidomethyl (C))SQLKR_	AVAELC(1)SQLKR		AVAELC(50)SQLKR		0	1	0			REV__ENSG00000130382|ENST00000252674|MLLT1	REV__ENSG00000130382|ENST00000252674|MLLT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.5688171386719	3	425.567695	1273.68126	2.4587	0.0010464	0.1778	7.5666E-05	2.6365	0.001122	425.5678382862518	27.178	0.62609	27.178	27.019	27.645	0					34	12	4	0	0	0	0.42065	1	9686	9686		50.034	11.319	1	2360400	+		5406	14576	2819	2841	5511	5511	542				0.055362026114153196
AVAEPANAVK	10	Unmodified	_AVAEPANAVK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;RNF213|p.N360Kfs*37|1|0.13|ENSG00000173821|chr17:80289797-80289798|-/A|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.270751953125	2	485.271824	968.529095	-0.010371	-5.0326E-06	-0.37114	-0.0001801	-0.38151	-0.00018514	485.2716893226976	20.428	0.16044	20.428	20.31	20.47	0					8	5	2	0	0	0	0.58189	1	5465	5465		36.447	4.9169	1	67861			5407	6453	2820	2842	5512	5512					0.043571699261860886
AVAEVRAENLK	11	Unmodified	_AVAEVRAENLK_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;ENST00000469463.1_1_1:186321098-186322975:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.3411865234375	2	600.340769	1198.66699	0.2439	0.00014642	0.13577	8.151E-05	0.37967	0.00022793	600.3410491730154	22.836	0.16696	22.836	22.728	22.894	0					7	3	3	0	0	0	0.024937	1	7797	7797		117.53	34.775	1	305260			5408	1219	2821	2843	5513	5513					0.07559873454783883
AVAGDFALINK	11	Unmodified	_AVAGDFALINK_					0	0	0		ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant;ATE1|p.A234Gfs*14|1|0.05|ENSG00000107669|chr10:121902505-121902506|-/T|frameshift_variant;nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant	ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.814208984375	2	559.813856	1117.61316	0.5069	0.00028377	-0.86347	-0.00048338	-0.35657	-0.00019961	559.8134594371834	38.95	0.22639	38.95	38.863	39.09	0					14	8	3	0	0	0	0.17498	1	14805	14805		88.177	46.75	1	143700			5409	246	2822	2844	5514	5514					0.05905701023084475
AVAGDFALINK	11	Unmodified	_AVAGDFALINK_					0	0	0		ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant;ATE1|p.A234Gfs*14|1|0.05|ENSG00000107669|chr10:121902505-121902506|-/T|frameshift_variant;nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant	ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.8150024414062	2	559.813856	1117.61316	1.7855	0.00099952	-1.6442	-0.00092047	0.14121	7.9051E-05	559.8128613829855	38.894	0.24753	38.894	38.837	39.084	0					19	8	3	0	0	0	0.20322	1	15272	15272		83.647	25.417	1	218660			5410	246	2822	2844	5515	5515					0.05905701023084475
AVAGDFALINK	11	Unmodified	_AVAGDFALINK_					0	0	0		ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant;ATE1|p.A234Gfs*14|1|0.05|ENSG00000107669|chr10:121902505-121902506|-/T|frameshift_variant;nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant	ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.814453125	2	559.813856	1117.61316	3.4694	0.0019422	-4.0105	-0.0022451	-0.54104	-0.00030288	559.8118254944541	38.865	0.5462	38.865	38.61	39.157	0					20	11	3	0	0	0	0.018969	1	15306	15306		126.24	60.777	1	480770			5411	246	2822	2844	5516	5516					0.05905701023084475
AVAGHHRL	8	Unmodified	_AVAGHHRL_					0	0	0			REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7454833984375	2	430.746111	859.477669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.922	1	23.922	23.422	24.422	0								0	0	0	1.7419	1	6986	6986		37.028	7.8789	1		+		5412	18242	2823	2845	5517	5517					0.042308907428036946
AVAGLPGAAL	10	Unmodified	_AVAGLPGAAL_					0	0	0		ENST00000478216.1_1_9:125652519-125667482:-|nuORF	ENST00000478216.1_1_9:125652519-125667482:-|nuORF	ENST00000478216.1_1_9:125652519-125667482:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.2528381347656	2	420.252903	838.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.738	1	41.738	41.238	42.238	0								0	0	0	0.41219	1	16412	16412		26.796	1.3459	1				5413	9929	2824	2846	5518	5518					0.06554703731353584
AVAGSSPRLP	10	Unmodified	_AVAGSSPRLP_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.77203369140625	2	477.771991	953.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.581	1	19.581	19.081	20.081	0								0	0	0	0.34115	1	5329	5329		44.377	3.599	1				5414	4827	2825	2847	5519	5519					0.05080589646047429
AVAHALTEK	9	Unmodified	_AVAHALTEK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.26617431640625	2	470.266542	938.51853	0.0049044	2.3064E-06	-0.58225	-0.00027381	-0.57734	-0.00027151	470.266400189509	17.389	0.094782	17.389	17.332	17.427	0					7	3	3	0	0	0	0.0086566	1	4147	4147		143.89	69.632	1	200610			5415	5559	2826	2848	5520	5520					0.0468118727176261
AVAHALTEK	9	Unmodified	_AVAHALTEK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2662658691406	2	470.266542	938.51853	0.17176	8.0773E-05	-0.62166	-0.00029235	-0.4499	-0.00021157	470.2661693557587	17.738	0.20881	17.738	17.658	17.866	0					13	5	4	0	0	0	0.0071053	1	5053	5053		148.99	38.867	1	1550500			5416	5559	2826	2848	5521	5521					0.0468118727176261
AVAHALTEK	9	Unmodified	_AVAHALTEK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2663269042969	2	470.266542	938.51853	0.60847	0.00028615	-2.5513	-0.0011998	-1.9428	-0.00091363	470.2660541011982	17.693	0.70488	17.693	17.2	17.904	0					29	14	3	0	0	0	0.0086566	1	5309	5309		143.89	53.517	1	2505000			5417	5559	2826	2848	5522	5522					0.0468118727176261
AVAHALTEK	9	Unmodified	_AVAHALTEK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.26629638671875	2	470.266542	938.51853	-0.53633	-0.00025222	0.1787	8.4035E-05	-0.35764	-0.00016818	470.2665305450727	17.64	0.17033	17.64	17.58	17.751	0					5	3	2	0	0	0	0.014688	1	5140	5140		131.03	62.245	1	278870			5418	5559	2826	2848	5523	5523					0.0468118727176261
AVAHALTEK	9	Unmodified	_AVAHALTEK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.26617431640625	2	470.266542	938.51853	0.53022	0.00024934	-2.6661	-0.0012538	-2.1359	-0.0010044	470.26597062170646	17.674	1.1082	17.674	17.363	18.471	0					35	22	3	0	0	0	0.0040894	1	5133	5133		162.25	22.282	1	1821000			5419	5559	2826	2848	5524	5524					0.0468118727176261
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7780456542969	2	451.778231	901.541908	-0.32333	-0.00014607	-0.91915	-0.00041525	-1.2425	-0.00056132	451.77794364095473	20.593	0.55465	20.593	20.512	21.067	0					37	17	5	0	0	0	0.015338	1	5525	5525		129.68	30.308	1	21073000			5420	3793	2827	2849	5525	5525					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7784729003906	2	451.778231	901.541908	-0.51079	-0.00023076	-0.6719	-0.00030355	-1.1827	-0.00053431	451.77838262587386	20.967	1.198	20.967	20.833	22.031	0					72	28	7	0	0	0	0.0090225	1	6575	6575		143.11	31.459	1	100150000			5421	3793	2827	2849	5526	5526					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7779235839844	2	451.778231	901.541908	-1.1928	-0.00053887	0.17269	7.8016E-05	-1.0201	-0.00046086	451.7784877096527	20.631	0.54648	20.631	20.525	21.071	0					48	17	5	0	0	0	0.1115	1	5767	5767		76.774	16.48	1	22201000			5422	3793	2827	2849	5527	5527					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7785339355469	2	451.778231	901.541908	-1.0967	-0.00049546	0.43854	0.00019812	-0.65815	-0.00029734	451.77855638617183	20.62	0.24347	20.62	20.543	20.786	0					14	7	3	0	0	0	0.16002	1	5778	5778		66.429	18.514	1	1362900			5423	3793	2827	2849	5528	5528					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7781982421875	2	451.778231	901.541908	0.71397	0.00032256	-2.0096	-0.00090789	-1.2956	-0.00058534	451.77759526333915	20.872	0.56042	20.872	20.713	21.273	0					29	11	4	0	0	0	0.0090225	1	6815	6815		143.11	31.459	1	97931000			5424	3793	2827	2849	5529	5529					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.778076171875	2	451.778231	901.541908	-0.36332	-0.00016414	-0.25446	-0.00011496	-0.61778	-0.0002791	451.77828997775094	20.855	0.41303	20.855	20.747	21.16	0					21	8	4	0	0	0	0.030949	1	6808	6808		108.09	19.445	1	8914700			5425	3793	2827	2849	5530	5530					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7780456542969	2	451.778231	901.541908	-0.09208	-4.16E-05	-0.7871	-0.00035559	-0.87918	-0.00039719	451.77798778603915	20.695	0.43377	20.695	20.558	20.992	0					26	10	5	0	0	0	0.0090225	1	5856	5856		143.11	31.459	1	6858000			5426	3793	2827	2849	5531	5531					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7778625488281	2	451.778231	901.541908	-2.6132	-0.0011806	1.437	0.00064921	-1.1762	-0.00053137	451.77908238499	20.685	0.69706	20.685	20.549	21.246	0					41	16	6	0	0	0	0.023074	1	5848	5848		116.9	42.387	1	24673000			5427	3793	2827	2849	5532	5532					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7782897949219	2	451.778231	901.541908	0.87671	0.00039608	-1.3513	-0.00061051	-0.47464	-0.00021443	451.7777022209851	20.836	0.36718	20.836	20.726	21.093	0					28	7	4	0	0	0	0.015338	1	6667	6667		129.68	18.034	1	64121000			5428	3793	2827	2849	5533	5533					0.08719909784724678
AVAIKAMAK	9	Unmodified	_AVAIKAMAK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7789306640625	2	451.778231	901.541908	2.5268	0.0011416	-3.3651	-0.0015203	-0.83833	-0.00037874	451.7773586549619	20.819	1.1654	20.819	20.658	21.823	0					69	23	6	0	0	0	0.015338	1	6683	6683		129.68	30.308	1	89897000			5429	3793	2827	2849	5534	5534					0.08719909784724678
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(53)AK	0	0	1		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7756652832031	2	459.775688	917.536823	0.81386	0.00037419	-0.72453	-0.00033312	0.08933	4.1072E-05	459.77530696264233	16.745	0.13023	16.745	16.662	16.792	0					9	3	4	0	0	0	0.26904	1	4611	4611		53.351	14.545	1	406100			5430	3793	2827	2850	5535	5535		158			0.07475605922115847
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(85)AK	0	0	1		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7753601074219	2	459.775688	917.536823	-0.67611	-0.00031086	-0.040074	-1.8425E-05	-0.71618	-0.00032928	459.7757769755202	16.736	1.384	16.736	16.608	17.992	0					59	34	3	0	0	0	0.0792	1	4585	4585		84.916	20.708	1	2875600			5431	3793	2827	2850	5536	5536		158			0.07475605922115847
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(69)AK	0	0	1		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7754821777344	2	459.775688	917.536823	-0.91323	-0.00041988	0.43372	0.00019941	-0.47951	-0.00022047	459.7759628968174	16.474	0.38297	16.474	16.368	16.751	0					28	13	3	0	0	0	0.14603	1	3930	3930		68.787	13.892	1	888730			5432	3793	2827	2850	5537	5537		158			0.07475605922115847
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(77)AK	0	0	1		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7752685546875	2	459.775688	917.536823	0.72237	0.00033213	-1.3508	-0.00062105	-0.62839	-0.00028892	459.7751527151546	16.672	1.1887	16.672	16.563	17.751	0					48	24	3	0	0	0	0.1115	1	4797	4797		76.774	21.88	1	4184400			5433	3793	2827	2850	5538	5538		158			0.07475605922115847
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(82)AK	0	0	1		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5A|p.A145P|1|0.15|ENSG00000132507|chr17:7311608-7311608|G/C|missense_variant	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7754821777344	2	459.775688	917.536823	-0.77538	-0.0003565	-0.52636	-0.00024201	-1.3017	-0.00059851	459.77523396338086	16.655	0.21017	16.655	16.547	16.757	0					7	4	2	0	0	0	0.087582	1	4812	4812		82.305	24.494	1	427640			5434	3793	2827	2850	5539	5539		158			0.07475605922115847
AVAKNQALK	9	Unmodified	_AVAKNQALK_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.78961181640625	2	471.790184	941.565815	-0.016676	-7.8675E-06	-0.92835	-0.00043799	-0.94503	-0.00044585	471.78959031044855	23.149	0.10964	23.149	23.084	23.193	0					5	3	2	0	0	0	0.41354	1	6665	6665		40.573	6.4001	1	78044			5435	3722	2828	2851	5540	5540					0.09269466542741611
AVALINAAIQK	11	Unmodified	_AVALINAAIQK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.346435546875	2	556.345323	1110.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.652	1	36.652	36.152	37.152	0								0	0	0	0.21261	1	13839	13839		62.107	3.3255	1				5436	4398	2829	2852	5541	5541					0.12518266811116519
AVALINAAIQK	11	Unmodified	_AVALINAAIQK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.3460083007812	2	556.345323	1110.67609	1.6915	0.00094106	-0.11256	-6.262E-05	1.5789	0.00087844	556.345127605905	36.603	0.21283	36.603	36.502	36.714	0					13	6	3	0	0	0	4.8879E-05	1	14259	14259		162.25	87.997	1	276290			5437	4398	2829	2852	5542	5542					0.12518266811116519
AVALINAAIQK	11	Unmodified	_AVALINAAIQK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.345703125	2	556.345323	1110.67609	1.8231	0.0010143	-1.525	-0.00084842	0.2981	0.00016585	556.3447207984224	36.521	0.27019	36.521	36.411	36.681	0					13	5	3	0	0	0	0.012338	1	14215	14215		124.08	55.234	1	245530			5438	4398	2829	2852	5543	5543					0.12518266811116519
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.79486083984375	2	470.794935	939.575317	-0.0038395	-1.8076E-06	-0.41039	-0.00019321	-0.41423	-0.00019502	470.79474434371394	32.339	0.43498	32.339	32.195	32.63	0					53	19	4	0	0	0	0.45358	1	10536	10536		37.159	2.9866	1	1305600			5439	6308	2830	2853	5544	5544					0.10311234828282068
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7948303222656	2	470.794935	939.575317	-0.61147	-0.00028788	0.42314	0.00019921	-0.18832	-8.8662E-05	470.7951422581756	32.652	0.3338	32.652	32.492	32.826	0					17	8	3	0	0	0	0.22377	1	12003	12003		58.782	8.7574	1	308950			5440	6308	2830	2853	5545	5545					0.10311234828282068
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7955017089844	2	470.794935	939.575317	-0.20652	-9.7228E-05	0.59502	0.00028013	0.3885	0.0001829	470.7952064688639	32.393	0.27941	32.393	32.25	32.529	0					11	8	2	0	0	0	0.45358	1	11244	11244		37.159	3.6435	1	92472			5441	6308	2830	2853	5546	5546					0.10311234828282068
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7944030761719	2	470.794935	939.575317	-0.60121	-0.00028305	0.17735	8.3498E-05	-0.42385	-0.00019955	470.79500972822603	32.385	0.46564	32.385	32.203	32.669	0					41	14	4	0	0	0	0.25716	1	11219	11219		54.776	2.4771	1	1974300			5442	6308	2830	2853	5547	5547					0.10311234828282068
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.794677734375	2	470.794935	939.575317	-0.54532	-0.00025673	0.087285	4.1093E-05	-0.45803	-0.00021564	470.7948969746211	32.581	0.47089	32.581	32.421	32.892	0					20	9	3	0	0	0	0.14603	1	12265	12265		68.787	8.4929	1	1172500			5443	6308	2830	2853	5548	5548					0.10311234828282068
AVALPPTHKK	10	Unmodified	_AVALPPTHKK_					0	0	0		PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant;ENSG00000104881|ENST00000360957|PPP1R13L	PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant	PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3272705078125	2	531.326934	1060.63931	0.28794	0.00015299	0.16042	8.5237E-05	0.44836	0.00023823	531.3271846101594	17.14	0.45323	17.14	17.03	17.483	0					21	9	3	0	0	0	0.52275	1	5073	5073		42.864	4.0581	1	380420			5444	2316	2831	2854	5549	5549					0.1114201498521652
AVALPVAVGR	10	Unmodified	_AVALPVAVGR_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.80010986328125	2	476.800552	951.58655	0.0051779	2.4688E-06	0.3647	0.00017389	0.36988	0.00017636	476.8006470821043	35.171	0.19225	35.171	35.119	35.311	0					11	9	2	0	0	0	0.31306	1	11526	11526		65.803	19.851	1	74068			5445	11803	2832	2855	5550	5550					0.10882056922423544
AVALPVAVGR	10	Unmodified	_AVALPVAVGR_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.80047607421875	2	476.800552	951.58655	0.37262	0.00017767	-1.1478	-0.00054726	-0.77516	-0.0003696	476.8000890268389	35.459	0.26769	35.459	35.383	35.651	0					12	7	2	0	0	0	0.20011	1	13294	13294		79.451	31.535	1	566520			5446	11803	2832	2855	5551	5551					0.10882056922423544
AVALPVAVGR	10	Unmodified	_AVALPVAVGR_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.8000793457031	2	476.800552	951.58655	-0.11813	-5.6325E-05	0.37865	0.00018054	0.26052	0.00012422	476.8006724263518	35.466	0.33369	35.466	35.328	35.662	0					20	9	4	0	0	0	0.26673	1	13725	13725		71.296	32.49	1	353080			5447	11803	2832	2855	5552	5552					0.10882056922423544
AVALPVAVGR	10	Unmodified	_AVALPVAVGR_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.8004150390625	2	476.800552	951.58655	-0.044497	-2.1216E-05	0.37917	0.00018079	0.33467	0.00015957	476.80057140536167	35.268	0.15417	35.268	35.165	35.32	0					7	5	2	0	0	0	0.26673	1	12545	12545		71.296	7.9894	1	61579			5448	11803	2832	2855	5553	5553					0.10882056922423544
AVALPVAVGR	10	Unmodified	_AVALPVAVGR_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.80029296875	2	476.800552	951.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.409	1	35.409	34.909	35.909	0								0	0	0	0.018409	1	13667	13667		99.375	53.423	1				5449	11803	2832	2855	5554	5554					0.10882056922423544
AVALPVAVGR	10	Unmodified	_AVALPVAVGR_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.800048828125	2	476.800552	951.58655	0.80353	0.00038312	-1.555	-0.00074145	-0.75152	-0.00035833	476.7998681024574	35.424	0.32357	35.424	35.262	35.586	0					16	6	4	0	0	0	0.12663	1	13662	13662		90.777	44.825	1	1217500			5450	11803	2832	2855	5555	5555					0.10882056922423544
AVALVLTVTG	10	Unmodified	_AVALVLTVTG_					0	0	0			REV__ENST00000593133.5_1_19:38085417-38085510:-|nuORF	REV__ENST00000593133.5_1_19:38085417-38085510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2943420410156	2	472.294768	942.574983	-0.58625	-0.00027688	0.23388	0.00011046	-0.35238	-0.00016643	472.2947057273538	39.793	0.25368	39.793	39.627	39.88	0					14	10	2	0	0	0	0.4943	1	15161	15161		45.952	1.8352	1	124910	+		5451	20546	2833	2856	5556	5556					0.1013981510842541
AVANIVNSVK	10	Unmodified	_AVANIVNSVK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.80072021484375	2	507.800749	1013.58694	-0.029254	-1.4855E-05	-0.22239	-0.00011293	-0.25164	-0.00012778	507.8006249507824	30.739	0.28152	30.739	30.553	30.835	0					14	6	4	0	0	0	0.057264	1	11125	11125		106.88	35.003	1	455310			5452	1198	2834	2857	5557	5557					0.08069431851617992
AVANIVNSVK	10	Unmodified	_AVANIVNSVK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.80072021484375	2	507.800749	1013.58694	-0.60616	-0.00030781	0.47539	0.0002414	-0.13078	-6.6408E-05	507.8010069512072	30.504	0.20561	30.504	30.445	30.651	0					16	7	3	0	0	0	0.13663	1	10033	10033		89.029	41.069	1	367650			5453	1198	2834	2857	5558	5558					0.08069431851617992
AVANIVNSVK	10	Unmodified	_AVANIVNSVK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8006896972656	2	507.800749	1013.58694	0.090148	4.5777E-05	-0.16538	-8.398E-05	-0.075232	-3.8203E-05	507.80044119855535	30.508	0.16284	30.508	30.431	30.594	0					8	4	2	0	0	0	0.1998	1	10392	10392		79.489	31.53	1	311940			5454	1198	2834	2857	5559	5559					0.08069431851617992
AVANIVNSVK	10	Unmodified	_AVANIVNSVK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.800537109375	2	507.800749	1013.58694	-1.9089	-0.00096933	1.905	0.00096739	-0.0038212	-1.9404E-06	507.80172282511995	30.54	0.16285	30.54	30.42	30.583	0					8	4	2	0	0	0	0.23114	1	10400	10400		75.652	16.87	1	227550			5455	1198	2834	2857	5560	5560					0.08069431851617992
AVAPNQNLK	9	Unmodified	_AVAPNQNLK_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7718200683594	2	477.771991	953.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.603	1	19.603	19.103	20.103	0								0	0	0	0.31623	1	5355	5355		31.955	0	1				5456	4485	2835	2858	5561	5561					0.0508058964603606
AVAPNQNLK	9	Unmodified	_AVAPNQNLK_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.77154541015625	2	477.771991	953.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.76	1	19.76	19.26	20.26	0								0	0	0	0.12457	1	6165	6165		65.803	4.8312	1				5457	4485	2835	2858	5562	5562					0.0508058964603606
AVAPPTPASK	10	Unmodified	_AVAPPTPASK_					0	0	0		ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7689208984375	2	469.768917	937.523281	0.61531	0.00028905	-1.3083	-0.0006146	-0.69299	-0.00032555	469.7684674051701	20.606	0.46783	20.606	20.314	20.781	0					23	9	3	0	0	0	0.36476	1	6725	6725		60.118	12.461	1	672490			5458	6457	2836	2859	5563	5563					0.0520207141452147
AVAQAIMSK	9	Unmodified	_AVAQAIMSK_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.75714111328125	2	459.757495	917.500437	0.81432	0.00037439	-1.9454	-0.00089442	-1.1311	-0.00052003	459.7568623869627	25.496	0.1343	25.496	25.374	25.509	0					7	3	3	0	0	0	0.11411	1	8714	8714		76.17	4.874	1	315460			5459	1958	2837	2860	5564	5564					0.0383872902539224
AVAQAIMSK	9	Unmodified	_AVAQAIMSK_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7568054199219	2	459.757495	917.500437	-0.1545	-7.1033E-05	-1.1558	-0.00053137	-1.3103	-0.0006024	459.75705190931853	25.468	0.16091	25.468	25.358	25.519	0					7	3	3	0	0	0	0.090954	1	9033	9033		81.525	10.147	1	186390			5460	1958	2837	2860	5565	5565					0.0383872902539224
AVAQAIMSK	9	Unmodified	_AVAQAIMSK_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7573547363281	2	459.757495	917.500437	-0.44884	-0.00020636	-0.30292	-0.00013927	-0.75176	-0.00034563	459.7574461525903	25.372	0.16705	25.372	25.264	25.431	0					8	3	3	0	0	0	0.063171	1	8886	8886		90.601	19.305	1	350900			5461	1958	2837	2860	5566	5566					0.0383872902539224
AVAQLWGQKK	10	Unmodified	_AVAQLWGQKK_					0	0	0		ENST00000475698.1_1_1:201982922-201984448:+|nuORF;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.8303833007812	2	564.82984	1127.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.487	1	26.487	25.987	26.987	0								0	0	0	0.081515	1	8057	8057		62.107	7.3311	1				5462	5555	2838	2861	5567	5567					0.08641113496878461
AVAQLWGQKK	10	Unmodified	_AVAQLWGQKK_					0	0	0		ENST00000475698.1_1_1:201982922-201984448:+|nuORF;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.830322265625	2	564.82984	1127.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.771	1	26.771	26.271	27.271	0								0	0	0	0.0020745	1	9622	9622		138.83	40.196	1				5463	5555	2838	2861	5568	5568					0.08641113496878461
AVAQNLSFCF	10	Carbamidomethyl (C)	_AVAQNLSFC(Carbamidomethyl (C))F_	AVAQNLSFC(1)F		AVAQNLSFC(57)F		0	1	0		ENST00000498213.1_1_10:75335912-75335963:-|nuORF	ENST00000498213.1_1_10:75335912-75335963:-|nuORF	ENST00000498213.1_1_10:75335912-75335963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8319091796875	2	578.776416	1155.53828	1.6463	0.00095286	-1.3784	-0.00079777	0.26796	0.00015509	578.7756245510587	41.167	0.56528	41.167	40.804	41.369	0					46	19	3	0	0	0	0.39566	1	16087	16087		56.721	7.2795	1	415700			5464	10136	2839	2862	5569	5569	409				-0.03326804779817394
AVAQRGSSVP	10	Unmodified	_AVAQRGSSVP_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-4|EFCAB6;nc|ENSG00000186976|Q5THR3-3|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.266845703125	2	486.267073	970.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.835	1	17.835	17.335	18.335	0								0	0	0	0.18178	1	4530	4530		66.429	3.123	1				5465	7175	2840	2863	5570	5570					0.033154016406683695
AVAQVIQHL	9	Unmodified	_AVAQVIQHL_					0	0	0			REV__ENST00000534523.1_1_11:90849456-90849543:+|nuORF	REV__ENST00000534523.1_1_11:90849456-90849543:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7901306152344	2	489.790184	977.565815	0.79952	0.0003916	-0.82129	-0.00040226	-0.021764	-1.066E-05	489.7895723522517	33.688	0.17146	33.688	33.58	33.752	0					9	4	3	0	0	0	0.22837	1	12482	12482		42.396	0	1	79864	+		5466	20093	2841	2864	5571	5571					0.07613466542750302
AVAQVLLQH	9	Unmodified	_AVAQVLLQH_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7906799316406	2	489.790184	977.565815	-0.13932	-6.8238E-05	-0.81714	-0.00040023	-0.95646	-0.00046846	489.79008097465135	33.445	0.15563	33.445	33.35	33.505	0					7	4	2	0	0	0	0.16806	1	11738	11738		68.787	4.5796	1	69802			5467	7761	2842	2865	5572	5572					0.07613466542750302
AVARAGTGAE	10	Unmodified	_AVARAGTGAE_					0	0	0			REV__ENST00000341485.9_1_1:154155564-154155654:-|nuORF	REV__ENST00000341485.9_1_1:154155564-154155654:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7378845214844	2	451.738148	901.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.1	1	21.1	20.6	21.6	0								0	0	0	0.35368	1	6944	6944		42.396	1.8235	1		+		5468	18452	2843	2866	5573	5573					0.007071397152344616
AVASALTTK	9	Unmodified	_AVASALTTK_					0	0	0			REV__ENSG00000089234|ENST00000419234|BRAP	REV__ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.2559814453125	2	431.255643	860.496732	-0.49077	-0.00021165	0.09558	4.122E-05	-0.39519	-0.00017043	431.25570445091773	27.279	0.21958	27.279	27.169	27.389	0					10	4	3	0	0	0	0.50858	1	9852	9852		31.53	2.3803	1	270820	+		5469	13409	2844	2867	5574	5574					0.06090382523166227
AVASDGKKIK	10	Unmodified	_AVASDGKKIK_					0	0	0		ENSG00000174948|ENST00000389740|GPR149;GPR149|p.I582Nfs*6|1|0.33|ENSG00000174948|chr3:154338150-154338151|-/T|frameshift_variant	ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.54144287109375	3	339.541475	1015.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.136	1	14.136	13.636	14.636	0								0	0	0	0.4201	1	3448	3448		15.333	3.1263	1				5470	6524	2845	2868	5575	5575					0.09541718368654983
AVASWSRIK	9	Unmodified	_AVASWSRIK_					0	0	0		EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant;nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;nc|ENSG00000136160|P24530-3|EDNRB	EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant	EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2956237792969	2	509.295633	1016.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.76	1	25.76	25.26	26.26	0								0	0	0	0.077333	1	9183	9183		71.877	6.0743	1				5471	880	2846	2869	5576	5576					0.06908868917025757
AVATAAAAK	9	Unmodified	_AVATAAAAK_					0	0	0		ENST00000341259.6_1_12:111843787-111843931:+|nuORF	ENST00000341259.6_1_12:111843787-111843931:+|nuORF	ENST00000341259.6_1_12:111843787-111843931:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.2293395996094	2	387.229428	772.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.247	1	15.247	14.747	15.747	0								0	0	0	0.19749	1	3977	3977		51.335	1.8939	1				5472	8734	2847	2870	5577	5577					0.04897844180220545
AVATALGLK	9	Unmodified	_AVATALGLK_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.2685546875	2	422.268553	842.522553	0.38545	0.00016277	-0.45174	-0.00019076	-0.06629	-2.7992E-05	422.2684145723735	30.698	0.10216	30.698	30.652	30.754	0					6	4	2	0	0	0	0.30951	1	9805	9805		49.442	12.282	1	31340			5473	2496	2848	2871	5578	5578					0.09499276765473041
AVATALGLK	9	Unmodified	_AVATALGLK_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.26837158203125	2	422.268553	842.522553	1.0052	0.00042446	-1.1802	-0.00049837	-0.17502	-7.3907E-05	422.2679335726504	31.008	0.39761	31.008	30.742	31.14	0					15	9	2	0	0	0	0.12239	1	11255	11255		74.255	20.904	1	370910			5474	2496	2848	2871	5579	5579					0.09499276765473041
AVATALGLK	9	Unmodified	_AVATALGLK_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2684631347656	2	422.268553	842.522553	-1.2014	-0.00050732	0.32596	0.00013764	-0.87546	-0.00036968	422.2687929105229	30.78	0.15644	30.78	30.69	30.846	0					7	5	2	0	0	0	0.14603	1	10133	10133		68.787	13.283	1	122200			5475	2496	2848	2871	5580	5580					0.09499276765473041
AVATALGLK	9	Unmodified	_AVATALGLK_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.26837158203125	2	422.268553	842.522553	0.85721	0.00036197	-1.0485	-0.00044276	-0.19132	-8.079E-05	422.26799926976616	30.99	0.24444	30.99	30.897	31.141	0					8	5	2	0	0	0	0.047412	1	11656	11656		96.19	35.218	1	403010			5476	2496	2848	2871	5581	5581					0.09499276765473041
AVATALGLK	9	Unmodified	_AVATALGLK_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2685241699219	2	422.268553	842.522553	-2.5777	-0.0010885	1.7629	0.00074443	-0.81476	-0.00034405	422.2694443619836	30.761	0.11333	30.761	30.68	30.793	0					5	3	2	0	0	0	0.16002	1	10520	10520		66.429	7.6473	1	124440			5477	2496	2848	2871	5582	5582					0.09499276765473041
AVATALGLK	9	Unmodified	_AVATALGLK_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2682800292969	2	422.268553	842.522553	1.054	0.00044508	-1.4774	-0.00062385	-0.42337	-0.00017878	422.26789466218145	30.97	0.26175	30.97	30.814	31.076	0					10	5	3	0	0	0	0.032052	1	11541	11541		107.01	19.253	1	612910			5478	2496	2848	2871	5583	5583					0.09499276765473041
AVATAQALQ	9	Unmodified	_AVATAQALQ_					0	0	0			REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7449645996094	2	436.745442	871.476331	0.27617	0.00012062	-0.9815	-0.00042867	-0.70533	-0.00030805	436.74531013345586	18.95	0.18944	18.95	18.858	19.048	0					6	4	2	0	0	0	0.1236	1	5060	5060		73.975	2.679	1	64398	+		5479	12294	2849	2872	5584	5584					0.03545211863365694
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	nc|ENSG00000038382|O75962-3|TRIO;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.5306396484375	3	326.530798	976.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.889	1	19.889	19.389	20.389	0								0	0	0	0.35507	1	5230	5230		39.253	11.371	1				5480	1182;11422	2850	2873	5585	5585					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	nc|ENSG00000038382|O75962-3|TRIO;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.29168701171875	2	489.292559	976.570566	-0.033499	-1.6391E-05	-0.42453	-0.00020772	-0.45803	-0.00022411	489.2923195943659	19.86	0.17797	19.86	19.792	19.97	0					13	5	4	0	0	0	0.035062	1	5208	5208		104.06	30.082	1	925790			5481	1182;11422	2850	2873	5586	5586					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	nc|ENSG00000038382|O75962-3|TRIO;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	326.5307922363281	3	326.530798	976.570566	0.63845	0.00020847	-0.5589	-0.0001825	0.079554	2.5977E-05	326.5306003295613	20.201	0.15214	20.201	20.153	20.305	0					8	3	3	0	0	0	0.39215	1	6240	6240		58.23	18.977	1	1926400			5482	1182;11422	2850	2873	5587	5587					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	nc|ENSG00000038382|O75962-3|TRIO;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.29229736328125	2	489.292559	976.570566	-0.43454	-0.00021262	0.74666	0.00036534	0.31212	0.00015272	489.29291724845984	20.233	0.29143	20.233	20.142	20.433	0					16	6	4	0	0	0	0.0016668	1	6230	6230		176.44	82.438	1	4189700			5483	1182;11422	2850	2873	5588	5588					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	nc|ENSG00000038382|O75962-3|TRIO;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2922668457031	2	489.292559	976.570566	-1.2525	-0.00061282	0.87617	0.0004287	-0.37629	-0.00018411	489.29299488149655	19.911	0.19513	19.911	19.842	20.037	0					13	6	3	0	0	0	0.0080613	1	5483	5483		145.16	54.379	1	711950			5484	1182;11422	2850	2873	5589	5589					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	nc|ENSG00000038382|O75962-3|TRIO;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2923889160156	2	489.292559	976.570566	-1.1624	-0.00056878	0.90375	0.0004422	-0.25869	-0.00012658	489.2928843948143	19.906	0.1163	19.906	19.86	19.976	0					7	3	3	0	0	0	0.056004	1	5478	5478		93.143	32.171	1	144900			5485	1182;11422	2850	2873	5590	5590					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	nc|ENSG00000038382|O75962-3|TRIO;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.29248046875	2	489.292559	976.570566	-0.71602	-0.00035034	0.54387	0.00026611	-0.17215	-8.4233E-05	489.292791809583	20.104	0.2175	20.104	20.045	20.263	0					10	4	4	0	0	0	0.013878	1	6473	6473		132.76	50.453	1	867170			5486	1182;11422	2850	2873	5591	5591					0.0813435068552053
AVATNQPPK	9	Unmodified	_AVATNQPPK_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2588806152344	2	463.258717	924.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.809	1	15.809	15.309	16.309	0								0	0	0	0.27025	1	3677	3677		40.778	5.5774	1				5487	11427	2851	2874	5592	5592					0.037609007547075635
AVATNQPPK	9	Unmodified	_AVATNQPPK_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2580871582031	2	463.258717	924.50288	-2.4131	-0.0011179	1.5659	0.00072542	-0.84723	-0.00039249	463.259474738002	15.82	0.10278	15.82	15.766	15.869	0					7	4	2	0	0	0	0.25716	1	3624	3624		54.776	8.8041	1	37795			5488	11427	2851	2874	5593	5593					0.037609007547075635
AVATRPSAL	9	Unmodified	_AVATRPSAL_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2608642578125	2	443.261259	884.507966	0.24802	0.00010994	-1.2125	-0.00053745	-0.96446	-0.00042751	443.2609052022097	28.37	0.14453	28.37	28.306	28.451	0					6	4	2	0	0	0	0.35021	1	8852	8852		45.972	1.8554	1	84624	+		5489	16228	2852	2875	5594	5594					0.0610920461731439
AVAVLTEHV	9	Unmodified	_AVAVLTEHV_					0	0	0			REV__ENSG00000141873|ENST00000269740|SLC39A3	REV__ENSG00000141873|ENST00000269740|SLC39A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7686767578125	2	469.768917	937.523281	-0.64787	-0.00030435	0.3227	0.0001516	-0.32516	-0.00015275	469.76904237623194	20.471	0.25938	20.471	20.31	20.569	0					11	6	2	0	0	0	0.49003	1	5741	5741		33.516	5.6333	1	122130	+		5490	15135	2853	2876	5595	5595					0.0520207141452147
AVAVTAAP	8	Unmodified	_AVAVTAAP_					0	0	0		ENSG00000244005|ENST00000374092|NFS1;ENST00000421540.1_1_20:34280185-34287249:-|nuORF;nc|ENSG00000244005|Q9Y697-3|NFS1	ENSG00000244005|ENST00000374092|NFS1	ENSG00000244005|ENST00000374092|NFS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.2064208984375	2	350.205421	698.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.899	1	44.899	44.399	45.399	0								0	0	0	1.7419	1	17987	17987		24.504	1.4673	1				5491	7962	2854	2877	5596	5596					0.03502770260183752
AVAVVSAVAL	10	Unmodified	_AVAVVSAVAL_					0	0	0			REV__PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	REV__PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2818603515625	2	450.28166	898.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.143	1	41.143	40.643	41.643	0								0	0	0	0.40002	1	13214	13214		30.504	0	1		+		5492	21407	2855	2878	5597	5597					0.09543545936935516
AVAYHGLAL	9	Unmodified	_AVAYHGLAL_					0	0	0			REV__ENSG00000185758|ENST00000541814|CLDN24	REV__ENSG00000185758|ENST00000541814|CLDN24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.75592041015625	2	457.758352	913.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.845	1	30.845	30.345	31.345	0								0	0	0	0.21213	1	11164	11164		49.211	1.2952	1		+		5493	17045	2856	2879	5598	5598					0.04194106105649098
AVCAGVAEV	9	Unmodified	_AVCAGVAEV_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.7070007324219	2	409.707471	817.400389	-2.2987	-0.00094179	2.1892	0.00089691	-0.10952	-4.4872E-05	409.7083130011399	23	0.26699	23	22.812	23.079	0					10	6	2	0	0	0	0.49003	1	6933	6933		33.516	5.2613	1	89698			5494	6771	2857	2880	5599	5599					-0.015615083084071557
AVCEKTFKH	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))EKTFKH_	AVC(1)EKTFKH		AVC(51)EKTFKH		0	1	0		ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.8586730957031	3	373.858698	1118.55426	0.79101	0.00029573	-1.071	-0.00040042	-0.28003	-0.00010469	373.85832646897285	16.822	0.17244	16.822	16.74	16.913	0					10	4	3	0	0	0	0.2873	1	4646	4646		51.335	25.761	1	1080300			5495	5869	2858	2881	5600	5600	247				-0.00027098542909698153
AVCEKTFKH	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))EKTFKH_	AVC(1)EKTFKH		AVC(67)EKTFKH		0	1	0		ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.2848510742188	2	560.284408	1118.55426	0.4969	0.00027841	-0.21746	-0.00012184	0.27944	0.00015657	560.2844854097477	16.817	0.13025	16.817	16.728	16.858	0					10	3	4	0	0	0	0.15163	1	4641	4641		67.494	18.052	1	994900			5496	5869	2858	2881	5601	5601	247				-0.00027098542909698153
AVCEKTFKH	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))EKTFKH_	AVC(1)EKTFKH		AVC(48)EKTFKH		0	1	0		ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.8586120605469	3	373.858698	1118.55426	0.8115	0.00030338	-1.0544	-0.00039418	-0.24286	-9.0796E-05	373.8582335925482	16.761	0.24892	16.761	16.664	16.913	0					12	5	4	0	0	0	0.3269	1	4866	4866		47.96	7.1814	1	1640500			5497	5869	2858	2881	5602	5602	247				-0.00027098542909698153
AVCEKTFKH	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))EKTFKH_	AVC(1)EKTFKH		AVC(43)EKTFKH		0	1	0		ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.8590087890625	3	373.858698	1118.55426	-0.1217	-4.5498E-05	0.23884	8.9292E-05	0.11714	4.3794E-05	373.8589378391754	16.598	0.091412	16.598	16.555	16.646	0					4	2	2	0	0	0	0.38666	1	3985	3985		42.864	12.547	1	83709			5498	5869	2858	2881	5603	5603	247				-0.00027098542909698153
AVCEKTFKH	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))EKTFKH_	AVC(1)EKTFKH		AVC(62)EKTFKH		0	1	0		ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.28466796875	2	560.284408	1118.55426	3.469	0.0019436	-2.9849	-0.0016724	0.48413	0.00027125	560.2828232190135	16.771	0.11424	16.771	16.714	16.828	0					4	2	2	0	0	0	0.19605	1	4729	4729		62.107	7.3311	1	991730			5499	5869	2858	2881	5604	5604	247				-0.00027098542909698153
AVCGKVKCK	9	2 Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))GKVKC(Carbamidomethyl (C))K_	AVC(1)GKVKC(1)K		AVC(110)GKVKC(110)K		0	2	0		ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.F173Lfs*5|3|0.42|ENSG00000135317|chr6:85565362-85565362|A/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.28369140625	2	525.283354	1048.55216	0.66969	0.00035177	-0.63863	-0.00033546	0.031058	1.6314E-05	525.2833575015522	12.963	0.10419	12.963	12.912	13.016	0					8	4	3	0	0	0	0.027316	1	2505	2505		111.65	60.456	1	649200			5500	3981	2859	2882	5605	5605	171;172				0.029821494476664157
AVCGKVKCK	9	2 Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))GKVKC(Carbamidomethyl (C))K_	AVC(1)GKVKC(1)K		AVC(110)GKVKC(110)K		0	2	0		ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.F173Lfs*5|3|0.42|ENSG00000135317|chr6:85565362-85565362|A/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2841186523438	2	525.283354	1048.55216	0.096295	5.0582E-05	1.1796	0.00061961	1.2759	0.00067019	525.2841497661477	13.224	0.23663	13.224	13.142	13.378	0					12	6	3	0	0	0	0.027316	1	2966	2966		111.65	37.674	1	3361800			5501	3981	2859	2882	5606	5606	171;172				0.029821494476664157
AVCGKVKCK	9	2 Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))GKVKC(Carbamidomethyl (C))K_	AVC(1)GKVKC(1)K		AVC(77)GKVKC(77)K		0	2	0		ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.F173Lfs*5|3|0.42|ENSG00000135317|chr6:85565362-85565362|A/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2841186523438	2	525.283354	1048.55216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.999	1	12.999	12.499	13.499	0								0	0	0	0.082437	1	2631	2631		76.774	27.333	1				5502	3981	2859	2882	5607	5607	171;172				0.029821494476664157
AVCGKVKCK	9	2 Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))GKVKC(Carbamidomethyl (C))K_	AVC(1)GKVKC(1)K		AVC(99)GKVKC(99)K		0	2	0		ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.F173Lfs*5|3|0.42|ENSG00000135317|chr6:85565362-85565362|A/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2838134765625	2	525.283354	1048.55216	-1.2435	-0.0006532	1.7363	0.00091207	0.49281	0.00025887	525.2844750389015	12.946	0.1503	12.946	12.893	13.044	0					11	7	3	0	0	0	0.03984	1	2561	2561		99.375	25.4	1	240200			5503	3981	2859	2882	5608	5608	171;172				0.029821494476664157
AVCGKVKCK	9	2 Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))GKVKC(Carbamidomethyl (C))K_	AVC(1)GKVKC(1)K		AVC(71)GKVKC(71)K		0	2	0		ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.F173Lfs*5|3|0.42|ENSG00000135317|chr6:85565362-85565362|A/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2841796875	2	525.283354	1048.55216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.202	1	13.202	12.702	13.702	0								0	0	0	0.10121	1	3007	3007		71.296	13.484	1				5504	3981	2859	2882	5609	5609	171;172				0.029821494476664157
AVCIFLHF	8	Unmodified	_AVCIFLHF_					0	0	0			REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2528076171875	2	475.251849	948.489145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.78	1	38.78	38.28	39.28	0								0	0	0	1.7419	1	15275	15275		43.626	10.133	1		+		5505	16180	2860	2883	5610	5610					0.012839517219163099
AVCKAGAVEK	10	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))KAGAVEK_	AVC(1)KAGAVEK		AVC(72)KAGAVEK		0	1	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7794799804688	2	516.778959	1031.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.713	1	14.713	14.213	15.213	0								0	0	0	0.13763	1	3078	3078		72.243	14.432	1				5506	1530	2861	2884	5611	5611	61				0.02885499082822207
AVCKAGAVEK	10	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))KAGAVEK_	AVC(1)KAGAVEK		AVC(80)KAGAVEK		0	1	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.779052734375	2	516.778959	1031.54336	1.2663	0.00065441	-1.5397	-0.00079567	-0.27335	-0.00014126	516.778413082672	14.985	0.19233	14.985	14.941	15.133	0					10	4	3	0	0	0	0.19191	1	3784	3784		80.455	27.103	1	1408400			5507	1530	2861	2884	5612	5612	61				0.02885499082822207
AVCKAGAVEK	10	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))KAGAVEK_	AVC(1)KAGAVEK		AVC(84)KAGAVEK		0	1	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7783813476562	2	516.778959	1031.54336	-0.0068617	-3.546E-06	1.146	0.00059224	1.1392	0.00058869	516.7796386577568	14.731	0.11323	14.731	14.67	14.784	0					10	5	3	0	0	0	0.16745	1	3236	3236		83.647	14.019	1	131530			5508	1530	2861	2884	5613	5613	61				0.02885499082822207
AVCKAGAVEK	10	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))KAGAVEK_	AVC(1)KAGAVEK		AVC(94)KAGAVEK		0	1	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.779296875	2	516.778959	1031.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.965	1	14.965	14.465	15.465	0								0	0	0	0.04026	1	3998	3998		93.598	38.821	1				5509	1530	2861	2884	5614	5614	61				0.02885499082822207
AVCKAGAVEK	10	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))KAGAVEK_	AVC(1)KAGAVEK		AVC(74)KAGAVEK		0	1	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2803955078125	2	516.778959	1031.54336	0.8267	0.00042722	0.048359	2.4991E-05	0.87506	0.00045221	516.7793544378992	14.747	0.096159	14.747	14.685	14.781	0					5	3	2	0	0	0	0.24329	1	3186	3186		74.165	16.354	1	53527			5510	1530	2861	2884	5615	5615	61				0.02885499082822207
AVCKAGAVEK	10	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))KAGAVEK_	AVC(1)KAGAVEK		AVC(62)KAGAVEK		0	1	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7791748046875	2	516.778959	1031.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.762	1	14.762	14.262	15.262	0								0	0	0	0.22047	1	3193	3193		61.691	13.732	1				5511	1530	2861	2884	5616	5616	61				0.02885499082822207
AVCLLHFPT	9	Unmodified	_AVCLLHFPT_					0	0	0			REV__SPHKAP|p.P530Qfs*32|1|0.43|ENSG00000153820|chr2:228019265-228019265|G/-|frameshift_variant	REV__SPHKAP|p.P530Qfs*32|1|0.43|ENSG00000153820|chr2:228019265-228019265|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.1796569824219	3	334.181001	999.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.345	1	20.345	19.845	20.845	0								0	0	0	0.3368	1	5664	5664		27.882	1.0861	1		+		5512	21599	2862	2885	5617	5617					0.02139319405068818
AVCMFLASK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))MFLASK_	AVC(1)MFLASK		AVC(59)MFLASK		0	1	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.75927734375	2	513.759181	1025.50381	0.64794	0.00033288	-1.0254	-0.00052681	-0.37746	-0.00019392	513.759039068025	37.15	0.18626	37.15	37.065	37.251	0					12	5	3	0	0	0	0.22377	1	14549	14549		58.782	17.355	1	86403			5513	3091	2863	2886	5618	5618	119				-0.007923441922457641
AVCMFLASK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))MFLASK_	AVC(1)MFLASK		AVC(60)MFLASK		0	1	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7591552734375	2	513.759181	1025.50381	0.10414	5.3501E-05	-0.31042	-0.00015948	-0.20628	-0.00010598	513.7590035124596	37.082	0.30811	37.082	36.977	37.285	0					11	6	3	0	0	0	0.21263	1	14500	14500		60.118	17.254	1	253180			5514	3091	2863	2886	5619	5619	119				-0.007923441922457641
AVCMFLASK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))MFLASK_	AVC(1)MFLASK		AVC(48)MFLASK		0	1	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7590942382812	2	513.759181	1025.50381	1.4595	0.00074981	-2.3855	-0.0012256	-0.92607	-0.00047578	513.7580916783699	37.111	0.25987	37.111	37.008	37.268	0					9	5	3	0	0	0	0.33044	1	14492	14492		47.657	9.8458	1	253850			5515	3091	2863	2886	5620	5620	119				-0.007923441922457641
AVCSDFFNK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))SDFFNK_	AVC(1)SDFFNK		AVC(67)SDFFNK		0	1	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;INTS8|p.V871M|1|0.36|ENSG00000164941|chr8:94873451-94873451|G/A|missense_variant;ENST00000523352.1_1_8:95884148-95885795:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2488403320312	2	544.247492	1086.48043	1.8742	0.00102	-1.0899	-0.00059318	0.78426	0.00042683	544.2472291051174	34.417	0.21076	34.417	34.334	34.545	0					15	5	4	0	0	0	0.15163	1	12810	12810		67.494	17.958	1	386790			5516	5745	2864	2887	5621	5621	242				-0.059350667052285644
AVCSIVTQR	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))SIVTQR_	AVC(1)SIVTQR		AVC(53)SIVTQR		0	1	0		ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85;nc|ENSG00000130695|Q6P2H3-3|CEP85	ENSG00000130695|ENST00000451429|CEP85	ENSG00000130695|ENST00000451429|CEP85	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.27587890625	2	517.276583	1032.53861	0.36721	0.00018995	-0.52956	-0.00027393	-0.16235	-8.3978E-05	517.2760090772343	25.558	0.10047	25.558	25.514	25.615	0					6	3	2	0	0	0	0.27249	1	7704	7704		52.937	10.541	1	70772			5517	3658	2865	2888	5622	5622	154				0.02364614940051979
AVCTLIHRK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))TLIHRK_	AVC(1)TLIHRK		AVC(72)TLIHRK		0	1	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;ENST00000495506.1_1_2:109368070-109368160:+|nuORF;RANBP2|p.W532R|1|0.12|ENSG00000153201|chr2:108751666-108751666|T/C|missense_variant;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.3165893554688	2	549.316043	1096.61753	0.51521	0.00028301	1.0066	0.00055293	1.5218	0.00083595	549.3166606054596	19.655	0.19177	19.655	19.554	19.746	0					7	4	2	0	0	0	0.13267	1	5979	5979		71.877	18.941	1	1094800			5518	5044;7071	2866	2889	5623	5623	204				0.07308886965006423
AVCYQAITK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))YQAITK_	AVC(1)YQAITK		AVC(80)YQAITK		0	1	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2738037109375	2	527.273509	1052.53247	1.2828	0.00067641	-0.70089	-0.00036956	0.58195	0.00030685	527.2734324848004	26.722	0.14251	26.722	26.658	26.8	0					10	5	3	0	0	0	0.095583	1	8165	8165		80.455	23.822	1	132670			5519	4402	2867	2890	5624	5624	184				0.008300967085460798
AVCYQAITK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))YQAITK_	AVC(1)YQAITK		AVC(100)YQAITK		0	1	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.27392578125	2	527.273509	1052.53247	2.1023	0.0011085	-1.4252	-0.00075149	0.67702	0.00035698	527.2730026886738	26.973	0.33484	26.973	26.805	27.14	0					21	8	4	0	0	0	0.037924	1	9380	9380		101.25	53.595	1	1034900			5520	4402	2867	2890	5625	5625	184				0.008300967085460798
AVCYQAITK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))YQAITK_	AVC(1)YQAITK		AVC(44)YQAITK		0	1	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.27392578125	2	527.273509	1052.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.766	1	26.766	26.266	27.266	0								0	0	0	0.24544	1	8456	8456		44.377	7.9304	1				5521	4402	2867	2890	5626	5626	184				0.008300967085460798
AVCYQAITK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))YQAITK_	AVC(1)YQAITK		AVC(110)YQAITK		0	1	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2743530273438	2	527.273509	1052.53247	0.9422	0.0004968	0.57037	0.00030074	1.5126	0.00079754	527.2738753309095	26.986	0.20997	26.986	26.879	27.089	0					10	4	3	0	0	0	0.026538	1	9735	9735		112.41	48.877	1	313210			5522	4402	2867	2890	5627	5627	184				0.008300967085460798
AVCYQAITK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))YQAITK_	AVC(1)YQAITK		AVC(48)YQAITK		0	1	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2742919921875	2	527.273509	1052.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.82	1	26.82	26.32	27.32	0								0	0	0	0.22075	1	8691	8691		47.96	10.148	1				5523	4402	2867	2890	5628	5628	184				0.008300967085460798
AVCYQAITK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))YQAITK_	AVC(1)YQAITK		AVC(100)YQAITK		0	1	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.273681640625	2	527.273509	1052.53247	0.65669	0.00034626	0.14775	7.7906E-05	0.80445	0.00042416	527.2736259949551	26.961	0.31432	26.961	26.756	27.07	0					13	6	4	0	0	0	0.037924	1	9578	9578		101.25	42.471	1	752260			5524	4402	2867	2890	5629	5629	184				0.008300967085460798
AVCYQAITK	9	Carbamidomethyl (C)	_AVC(Carbamidomethyl (C))YQAITK_	AVC(1)YQAITK		AVC(65)YQAITK		0	1	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2737426757812	2	527.273509	1052.53247	1.6281	0.00085845	-0.47548	-0.00025071	1.1526	0.00060774	527.273154477971	26.944	0.26465	26.944	26.788	27.053	0					8	5	2	0	0	0	0.16806	1	9596	9596		65.465	19.009	1	596150			5525	4402	2867	2890	5630	5630	184				0.008300967085460798
AVDAGGVRK	9	Unmodified	_AVDAGGVRK_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000480158.1_1_10:69714333-69714887:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7508544921875	2	436.751059	871.487565	-0.27748	-0.00012119	0.035383	1.5453E-05	-0.2421	-0.00010574	436.75078383573543	14.65	0.063373	14.65	14.621	14.685	0					4	2	2	0	0	0	0.41113	1	3056	3056		40.778	1.7567	1	79397			5526	4845	2868	2891	5631	5631					0.04668033957523221
AVDAGGVRK	9	Unmodified	_AVDAGGVRK_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000480158.1_1_10:69714333-69714887:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.75103759765625	2	436.751059	871.487565	-1.0246	-0.0004475	0.54944	0.00023997	-0.47516	-0.00020753	436.7513481437404	14.668	0.11136	14.668	14.617	14.728	0					6	4	2	0	0	0	0.17854	1	3220	3220		64.207	11.908	1	121540			5527	4845	2868	2891	5632	5632					0.04668033957523221
AVDAGGVRK	9	Unmodified	_AVDAGGVRK_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000480158.1_1_10:69714333-69714887:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.75103759765625	2	436.751059	871.487565	0.32083	0.00014012	-0.64681	-0.00028249	-0.32598	-0.00014237	436.75090176649894	14.918	0.16354	14.918	14.813	14.977	0					8	3	3	0	0	0	0.13267	1	3987	3987		71.877	21.853	1	868530			5528	4845	2868	2891	5633	5633					0.04668033957523221
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.3027954101562	2	525.301781	1048.58901	1.3936	0.00073206	0.2901	0.00015239	1.6837	0.00088444	525.3018912851421	12.297	0.15641	12.297	12.257	12.414	0					11	9	2	0	0	0	0.54081	1	2332	2332		14.865	0	1	123140			5529	3146	2869	2892	5634	5634					0.06665905380077675
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.3023071289062	2	525.301781	1048.58901	1.9056	0.001001	-0.92935	-0.00048819	0.97627	0.00051284	525.3013883601013	12.541	0.57708	12.541	12.44	13.017	0					31	17	4	0	0	0	0.3269	1	2654	2654		32.812	6.1195	1	2244500			5530	3146	2869	2892	5635	5635					0.06665905380077675
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.5367126464844	3	350.536946	1048.58901	0.49631	0.00017398	-0.93034	-0.00032612	-0.43403	-0.00015214	350.53664567999533	12.536	0.2549	12.536	12.464	12.719	0					13	8	2	0	0	0	0.55379	1	2649	2649		26.693	5.746	1	577220			5531	3146	2869	2892	5636	5636					0.06665905380077675
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.3037109375	2	525.301781	1048.58901	0.5673	0.000298	1.1343	0.00059583	1.7016	0.00089383	525.3024620696777	12.283	0.1032	12.283	12.231	12.334	0					14	6	3	0	0	0	0.3269	1	2418	2418		32.812	0	1	238060			5532	3146	2869	2892	5637	5637					0.06665905380077675
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.5369873046875	3	350.536946	1048.58901	-0.82461	-0.00028906	0.92552	0.00032443	0.1009	3.5371E-05	350.5372352136675	12.287	0.11992	12.287	12.231	12.351	0					12	7	2	0	0	0	0.4966	1	2419	2419		32.812	11.865	1	158520			5533	3146	2869	2892	5638	5638					0.06665905380077675
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.3027954101562	2	525.301781	1048.58901	1.1721	0.00061568	0.82417	0.00043294	1.9962	0.0010486	525.3020438376094	12.265	0.13389	12.265	12.222	12.356	0					17	8	3	0	0	0	0.40353	1	2366	2366		26.693	12.918	1	94810			5534	3146	2869	2892	5639	5639					0.06665905380077675
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.3035888671875	2	525.301781	1048.58901	-1.246	-0.00065452	3.5401	0.0018596	2.2941	0.0012051	525.3039321046114	12.27	0.10359	12.27	12.2	12.304	0					9	6	2	0	0	0	0.49718	1	2371	2371		19.104	0	1	121610			5535	3146	2869	2892	5640	5640					0.06665905380077675
AVDAPRRHK	9	Unmodified	_AVDAPRRHK_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.8710021972656	3	350.536946	1048.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.259	1	12.259	11.759	12.759	0								0	0	0	0.27939	1	2370	2370		39.253	11.371	1				5536	3146	2869	2892	5641	5641					0.06665905380077675
AVDATLRKK	9	Unmodified	_AVDATLRKK_					0	0	0		ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3087463378906	2	501.308741	1000.60293	-0.96919	-0.00048587	0.72894	0.00036542	-0.24026	-0.00012044	501.30922131468174	15.454	0.14618	15.454	15.348	15.494	0					7	5	2	0	0	0	0.026848	1	3532	3532		85.161	5.7098	1	329620			5537	3694	2870	2893	5642	5642					0.10265138088516323
AVDATLRKK	9	Unmodified	_AVDATLRKK_					0	0	0		ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.5414733886719	3	334.541586	1000.60293	-1.9067	-0.00063788	0.94997	0.0003178	-0.95676	-0.00032008	334.5420244261992	15.468	0.10825	15.468	15.399	15.507	0					5	3	2	0	0	0	0.42902	1	3483	3483		39.253	7.723	1	137520			5538	3694	2870	2893	5643	5643					0.10265138088516323
AVDDKQLRK	9	Unmodified	_AVDDKQLRK_					0	0	0		RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant;nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28;RBM28|p.K496R|1|0.23|ENSG00000106344|chr7:128321342-128321342|T/C|missense_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.20843505859375	3	358.208495	1071.60366	0.7222	0.0002587	-0.76549	-0.00027421	-0.043287	-1.5506E-05	358.20818019812486	15.288	0.18169	15.288	15.241	15.423	0					8	4	3	0	0	0	0.47038	1	3928	3928		60.118	23.672	1	149100			5539	2434	2871	2894	5644	5644					0.07071932737562747
AVDDKQLRK	9	Unmodified	_AVDDKQLRK_					0	0	0		RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant;nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28;RBM28|p.K496R|1|0.23|ENSG00000106344|chr7:128321342-128321342|T/C|missense_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8096923828125	2	536.809105	1071.60366	-0.44084	-0.00023665	2.532	0.0013592	2.0912	0.0011226	536.8103738469282	15.054	0.041722	15.054	15.015	15.057	0					4	2	2	0	0	0	0.25716	1	3359	3359		54.776	33.829	1	37863			5540	2434	2871	2894	5645	5645					0.07071932737562747
AVDDKQLRK	9	Unmodified	_AVDDKQLRK_					0	0	0		RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant;nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28;RBM28|p.K496R|1|0.23|ENSG00000106344|chr7:128321342-128321342|T/C|missense_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.2086181640625	3	358.208495	1071.60366	-0.061559	-2.2051E-05	-0.048701	-1.7445E-05	-0.11026	-3.9496E-05	358.20845047414247	15.221	0.11862	15.221	15.162	15.28	0					4	2	2	0	0	0	0.53083	1	3976	3976		52.937	31.156	1	162640			5541	2434	2871	2894	5646	5646					0.07071932737562747
AVDDRGLYK	9	Unmodified	_AVDDRGLYK_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;nc|ENSG00000226098|P0C7V7|SEC11B;ENSG00000140612|ENST00000268220|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.774658203125	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.827	1	21.827	21.327	22.327	0								0	0	0	0.19847	1	6072	6072		51.193	15.574	1				5542	11553	2872	2895	5647	5647					0.018562684378593985
AVDDRGLYK	9	Unmodified	_AVDDRGLYK_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;nc|ENSG00000226098|P0C7V7|SEC11B;ENSG00000140612|ENST00000268220|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7748413085938	2	518.774731	1035.53491	1.3607	0.00070588	-0.51091	-0.00026505	0.84975	0.00044083	518.7741197297771	22.125	0.27553	22.125	22.031	22.307	0					14	6	3	0	0	0	0.085655	1	7149	7149		82.75	27.974	1	1109600			5543	11553	2872	2895	5648	5648					0.018562684378593985
AVDEAADALLK	11	Unmodified	_AVDEAADALLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.3009033203125	2	558.300778	1114.587	1.3111	0.00073201	-0.53243	-0.00029725	0.77871	0.00043476	558.3003796093374	37.06	0.10835	37.06	36.977	37.086	0					4	2	2	0	0	0	0.39748	1	14454	14454		42.338	6.0204	1	45017			5544	3774	2873	2896	5649	5649					0.034293870609417354
AVDGNTVELK	10	Unmodified	_AVDGNTVELK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2803344726562	2	523.279846	1044.54514	1.5006	0.00078523	-0.74744	-0.00039112	0.75315	0.00039411	523.2795794853334	25.711	0.080238	25.711	25.675	25.756	0					4	2	2	0	0	0	0.30252	1	7774	7774		66.962	8.7157	1	64681			5545	6687	2874	2897	5650	5650					0.02464831372435583
AVDGNTVELK	10	Unmodified	_AVDGNTVELK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2801513671875	2	523.279846	1044.54514	1.7072	0.00089334	-1.168	-0.00061119	0.53919	0.00028215	523.2794616373751	26.005	0.13746	26.005	25.916	26.053	0					9	3	3	0	0	0	0.43708	1	8930	8930		52.167	2.7256	1	381500			5546	6687	2874	2897	5651	5651					0.02464831372435583
AVDGNTVELK	10	Unmodified	_AVDGNTVELK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2803344726562	2	523.279846	1044.54514	1.6251	0.00085037	-0.66198	-0.0003464	0.9631	0.00050397	523.2794938436253	25.941	0.21454	25.941	25.837	26.051	0					8	4	2	0	0	0	0.11826	1	9116	9116		92.239	32.121	1	646310			5547	6687	2874	2897	5652	5652					0.02464831372435583
AVDIASAAK	9	Unmodified	_AVDIASAAK_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2398376464844	2	423.239993	844.465432	-0.24628	-0.00010423	0.043508	1.8414E-05	-0.20277	-8.582E-05	423.23982132633466	23.765	0.16709	23.765	23.663	23.83	0					8	3	3	0	0	0	0.22837	1	8222	8222		58.23	10.573	1	195160			5548	7880	2875	2898	5653	5653					0.03697809489085557
AVDNADPILK	10	Unmodified	_AVDNADPILK_					0	0	0		AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant;AGL|p.N1304Ifs*10|1|0.38|ENSG00000162688|chr1:99912472-99912472|A/-|frameshift_variant;AGL|p.K1407Nfs*8|1|0.39|ENSG00000162688|chr1:99915441-99915441|A/-|frameshift_variant;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2902221679688	2	528.290214	1054.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.744	1	30.744	30.244	31.244	0								0	0	0	0.29594	1	11117	11117		51.528	15.081	1				5549	91	2876	2899	5654	5654					0.040774217520947786
AVDNADPILK	10	Unmodified	_AVDNADPILK_					0	0	0		AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant;AGL|p.N1304Ifs*10|1|0.38|ENSG00000162688|chr1:99912472-99912472|A/-|frameshift_variant;AGL|p.K1407Nfs*8|1|0.39|ENSG00000162688|chr1:99915441-99915441|A/-|frameshift_variant;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2905883789062	2	528.290214	1054.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.725	1	30.725	30.225	31.225	0								0	0	0	0.26178	1	11515	11515		56.632	8.6727	1				5550	91	2876	2899	5655	5655					0.040774217520947786
AVDNNSKVK	9	Unmodified	_AVDNNSKVK_					0	0	0		ENST00000584883.1_1_18:24179506-24179722:+|nuORF;ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000584883.1_1_18:24179506-24179722:+|nuORF	ENST00000584883.1_1_18:24179506-24179722:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7665710449219	2	487.766906	973.519259	-0.36021	-0.0001757	-0.63139	-0.00030797	-0.99159	-0.00048367	487.7664982751468	12.568	0.25242	12.568	12.434	12.686	0					15	8	3	0	0	0	0.014413	1	2676	2676		131.62	40.84	1	1420300			5551	956	2877	2900	5656	5656					0.031439819208117115
AVDNNSKVK	9	Unmodified	_AVDNNSKVK_					0	0	0		ENST00000584883.1_1_18:24179506-24179722:+|nuORF;ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000584883.1_1_18:24179506-24179722:+|nuORF	ENST00000584883.1_1_18:24179506-24179722:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7666015625	2	487.766906	973.519259	-0.70452	-0.00034364	0.43873	0.000214	-0.2658	-0.00012965	487.76714588285034	12.584	0.38626	12.584	12.414	12.801	0					21	9	4	0	0	0	0.011893	1	2873	2873		136.99	46.212	1	3299500			5552	956	2877	2900	5657	5657					0.031439819208117115
AVDPSSGHPR	10	Unmodified	_AVDPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7545166015625	2	511.75433	1021.49411	0.0015045	7.6992E-07	-2.5914	-0.0013261	-2.5899	-0.0013254	511.75321859336094	15.198	0.48294	15.198	14.967	15.45	0					23	11	3	0	0	0	0.41384	1	3860	3860		54.722	8.7501	1	1229900			5553	5683	2878	2901	5658	5658					-0.015780728817617273
AVDPSSGHPR	10	Unmodified	_AVDPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.75518798828125	2	511.75433	1021.49411	-0.34589	-0.00017701	0.62069	0.00031764	0.2748	0.00014063	511.75495060721204	14.954	0.1767	14.954	14.825	15.002	0					17	7	3	0	0	0	0.35046	1	3304	3304		61.691	22.438	1	96096			5554	5683	2878	2901	5659	5659					-0.015780728817617273
AVDPSSGHPR	10	Unmodified	_AVDPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7544250488281	2	511.75433	1021.49411	1.2388	0.00063397	-1.7144	-0.00087733	-0.47555	-0.00024336	511.75356601227185	15.184	0.36255	15.184	14.977	15.339	0					25	7	5	0	0	0	0.15477	1	4090	4090		85.862	39.91	1	1200300			5555	5683	2878	2901	5660	5660					-0.015780728817617273
AVDPSSGHPR	10	Unmodified	_AVDPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7546081542969	2	511.75433	1021.49411	-1.7322	-0.00088646	2.1484	0.0010994	0.41617	0.00021298	511.75558434123883	14.988	0.2915	14.988	14.867	15.159	0					21	13	3	0	0	0	0.48965	1	3260	3260		46.457	28.132	1	196020			5556	5683	2878	2901	5661	5661					-0.015780728817617273
AVDQIAFQK	9	Unmodified	_AVDQIAFQK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2798767089844	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.316	1	30.316	29.816	30.816	0								0	0	0	0.18191	1	9649	9649		54.722	13.296	1				5557	4622	2879	2902	5662	5662					0.03621456443227089
AVDQIAFQK	9	Unmodified	_AVDQIAFQK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2794189453125	2	510.279649	1018.54475	-0.44582	-0.00022749	0.66917	0.00034146	0.22335	0.00011397	510.2800133943072	30.378	0.26213	30.378	30.247	30.509	0					17	8	3	0	0	0	0.037098	1	9965	9965		106.68	26.97	1	325920			5558	4622	2879	2902	5663	5663					0.03621456443227089
AVDQIAFQK	9	Unmodified	_AVDQIAFQK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.27960205078125	2	510.279649	1018.54475	1.1959	0.00061026	-1.0069	-0.0005138	0.18904	9.6463E-05	510.2791073597442	30.602	0.41216	30.602	30.496	30.909	0					18	5	4	0	0	0	0.037098	1	11460	11460		106.68	40.88	1	2406800			5559	4622	2879	2902	5664	5664					0.03621456443227089
AVDQIAFQK	9	Unmodified	_AVDQIAFQK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2798767089844	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.363	1	30.363	29.863	30.863	0								0	0	0	0.017282	1	10330	10330		106.68	29.365	1				5560	4622	2879	2902	5665	5665					0.03621456443227089
AVDQIAFQK	9	Unmodified	_AVDQIAFQK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.27947998046875	2	510.279649	1018.54475	-1.8071	-0.00092214	2.5352	0.0012937	0.72812	0.00037154	510.28126771701926	30.364	0.30067	30.364	30.243	30.543	0					13	7	3	0	0	0	0.037712	1	10346	10346		95.815	21.56	1	323810			5561	4622	2879	2902	5666	5666					0.03621456443227089
AVDQIAFQK	9	Unmodified	_AVDQIAFQK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.27972412109375	2	510.279649	1018.54475	1.3707	0.00069945	-1.0108	-0.00051578	0.35994	0.00018367	510.27927387821893	30.54	0.69971	30.54	30.376	31.076	0					28	14	4	0	0	0	0.058553	1	11318	11318		96.034	46.592	1	1842400			5562	4622	2879	2902	5667	5667					0.03621456443227089
AVDQIAFQK	9	Unmodified	_AVDQIAFQK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.27960205078125	2	510.279649	1018.54475	3.0476	0.0015551	-2.58	-0.0013165	0.46764	0.00023863	510.27848652662516	30.573	0.65105	30.573	30.163	30.814	0					14	6	3	0	0	0	0.026656	1	11334	11334		117.81	43.836	1	1648900			5563	4622	2879	2902	5668	5668					0.03621456443227089
AVDSQILPK	9	Unmodified	_AVDSQILPK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.78155517578125	2	485.782025	969.549496	0.64887	0.00031521	-0.0778	-3.7794E-05	0.57107	0.00027742	485.78149772228545	30.001	0.72371	30.001	29.553	30.277	0					46	15	4	0	0	0	0.022525	1	11113	11113		117.81	24.668	1	1279000			5564	1792	2880	2903	5669	5669					0.06350340585993308
AVDSQILPK	9	Unmodified	_AVDSQILPK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7818603515625	2	485.782025	969.549496	-0.24698	-0.00011998	-0.25702	-0.00012486	-0.504	-0.00024484	485.7819024849255	29.741	0.52461	29.741	29.415	29.94	0					18	14	2	0	0	0	0.16806	1	10002	10002		65.465	0	1	87458			5565	1792	2880	2903	5670	5670					0.06350340585993308
AVDSQILPK	9	Unmodified	_AVDSQILPK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7815856933594	2	485.782025	969.549496	0.83582	0.00040603	-1.0514	-0.00051074	-0.21555	-0.00010471	485.7813812103063	29.904	0.66195	29.904	29.485	30.147	0					37	13	4	0	0	0	0.085655	1	10969	10969		82.75	15.257	1	638560			5566	1792	2880	2903	5671	5671					0.06350340585993308
AVDSQILPK	9	Unmodified	_AVDSQILPK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7816467285156	2	485.782025	969.549496	2.5055	0.0012171	-2.2646	-0.0011001	0.24083	0.00011699	485.7805213750965	29.957	1.0504	29.957	29.375	30.425	0					53	21	4	0	0	0	0.12834	1	10982	10982		72.879	9.3454	1	1139100			5567	1792	2880	2903	5672	5672					0.06350340585993308
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|3|0.43|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.25299072265625	2	469.2531	936.491647	0.018568	8.7129E-06	-0.12906	-6.0561E-05	-0.11049	-5.1848E-05	469.2530804370072	22.882	0.23413	22.882	22.781	23.015	0					16	7	3	0	0	0	0.056004	1	6530	6530		93.143	40.207	1	678140			5568	6517	2881	2904	5673	5673					0.020860786605680914
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|3|0.43|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.25311279296875	2	469.2531	936.491647	0.233	0.00010933	-0.45039	-0.00021135	-0.2174	-0.00010201	469.2528258584562	23.184	0.32357	23.184	23.093	23.417	0					23	7	4	0	0	0	0.0071053	1	7632	7632		148.99	85.681	1	5498500			5569	6517	2881	2904	5674	5674					0.020860786605680914
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|3|0.43|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.25286865234375	2	469.2531	936.491647	-0.12639	-5.9308E-05	-0.40213	-0.0001887	-0.52852	-0.00024801	469.25288783927346	23.12	0.36665	23.12	23.012	23.378	0					20	7	4	0	0	0	0.012231	1	7907	7907		136.27	64.972	1	2270500			5570	6517	2881	2904	5675	5675					0.020860786605680914
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|3|0.43|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.25323486328125	2	469.2531	936.491647	-0.21704	-0.00010184	1.0615	0.00049811	0.84447	0.00039627	469.2535379891541	22.972	0.27249	22.972	22.838	23.11	0					13	6	3	0	0	0	0.01873	1	6924	6924		124.08	55.293	1	378290			5571	6517	2881	2904	5676	5676					0.020860786605680914
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|3|0.43|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2527160644531	2	469.2531	936.491647	-0.66846	-0.00031368	-0.17406	-8.168E-05	-0.84252	-0.00039536	469.253128017563	22.955	0.17813	22.955	22.869	23.047	0					7	4	2	0	0	0	0.07136	1	6937	6937		87.696	36.361	1	264430			5572	6517	2881	2904	5677	5677					0.020860786605680914
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|3|0.43|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2528076171875	2	469.2531	936.491647	-0.52299	-0.00024541	0.085672	4.0202E-05	-0.43732	-0.00020521	469.2531213978034	23.092	0.41112	23.092	22.99	23.401	0					17	8	3	0	0	0	0.012231	1	7789	7789		136.27	69.839	1	4034700			5573	6517	2881	2904	5678	5678					0.020860786605680914
AVDTEGLFGF	10	Unmodified	_AVDTEGLFGF_					0	0	0		SLC35F6|p.G213D|1|0.16|ENSG00000213699|chr2:26776474-26776474|G/A|missense_variant	SLC35F6|p.G213D|1|0.16|ENSG00000213699|chr2:26776474-26776474|G/A|missense_variant	SLC35F6|p.G213D|1|0.16|ENSG00000213699|chr2:26776474-26776474|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.255615234375	2	528.25584	1054.49713	0.20099	0.00010618	0.33518	0.00017706	0.53618	0.00028324	528.2557205528893	31.057	0.44181	31.057	30.87	31.311	0					28	16	3	0	0	0	0.69166	1	10244	10244		23.042	0	1	90711			5574	22409	2882	2905	5679	5679					-0.027942425476112476
AVDTTTLPT	9	Unmodified	_AVDTTTLPT_					0	0	0			REV__DAO|p.F39V|1|0.17|ENSG00000110887|chr12:108885121-108885121|T/G|missense_variant	REV__DAO|p.F39V|1|0.17|ENSG00000110887|chr12:108885121-108885121|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7420959472656	2	459.742565	917.470577	0.077902	3.5815E-05	-0.34579	-0.00015898	-0.26789	-0.00012316	459.74209773070754	32.863	0.19042	32.863	32.782	32.972	0					10	7	2	0	0	0	0.37197	1	10657	10657		44.117	1.6423	1	83725	+		5575	12668	2883	2906	5680	5680					0.008540685610341825
AVDVFQVAK	9	Unmodified	_AVDVFQVAK_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.775634765625	2	488.776742	975.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.121	1	36.121	35.621	36.621	0								0	0	0	0.21054	1	12234	12234		49.442	5.0644	1				5576	4635	2884	2907	5681	5681					0.05018357931567152
AVDVFQVAK	9	Unmodified	_AVDVFQVAK_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7765197753906	2	488.776742	975.538931	-0.17871	-8.7349E-05	0.14561	7.1172E-05	-0.033097	-1.6177E-05	488.77681739413106	36.259	0.33894	36.259	36.036	36.375	0					20	12	2	0	0	0	0.30951	1	12926	12926		49.442	7.0454	1	66764			5577	4635	2884	2907	5682	5682					0.05018357931567152
AVEDAIARK	9	Unmodified	_AVEDAIARK_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000566317.1_1_16:88695075-88697704:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.77685546875	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.813	1	19.813	19.313	20.313	0								0	0	0	0.072369	1	5431	5431		79.713	19.419	1				5578	5269	2885	2908	5683	5683					0.05308572300452852
AVEERIAVY	9	Unmodified	_AVEERIAVY_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.285400390625	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.172	1	33.172	32.672	33.672	0								0	0	0	0.17378	1	12243	12243		57.811	8.3697	1		+		5579	12026	2886	2909	5684	5684					0.03297439097673305
AVEGGMKCVK	10	Unmodified	_AVEGGMKCVK_					0	0	0		CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant;ENSG00000135404|ENST00000257857|CD63;nc|ENSG00000135404|P08962-2|CD63	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2621154785156	2	511.262087	1020.50962	-0.12662	-6.4735E-05	0.24338	0.00012443	0.11676	5.9694E-05	511.26222923677096	19.028	0.10183	19.028	18.959	19.061	0					5	3	2	0	0	0	0.56931	1	4853	4853		37.812	7.3079	1	74890			5580	431	2887	2910	5685	5685					0.00018754319421532273
AVEGGMKCVK	10	Unmodified	_AVEGGMKCVK_					0	0	0		CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant;ENSG00000135404|ENST00000257857|CD63;nc|ENSG00000135404|P08962-2|CD63	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2621154785156	2	511.262087	1020.50962	-0.43719	-0.00022352	-0.0052553	-2.6868E-06	-0.44245	-0.00022621	511.2621189991546	19.255	0.21504	19.255	19.197	19.412	0					8	4	3	0	0	0	0.17315	1	6064	6064		82.75	16.321	1	352950			5581	431	2887	2910	5686	5686					0.00018754319421532273
AVEGPSEAK	9	Unmodified	_AVEGPSEAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.22735595703125	2	444.227082	886.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.406	1	16.406	15.906	16.906	0								0	0	0	0.1633	1	3726	3726		56.721	5.3856	1				5582	7403	2888	2911	5687	5687					-0.008150847531965155
AVEGPSEAK	9	Unmodified	_AVEGPSEAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.226806640625	2	444.227082	886.439611	0.58842	0.00026139	-0.97878	-0.0004348	-0.39036	-0.00017341	444.2266570224855	16.666	0.50791	16.666	16.362	16.87	0					26	12	3	0	0	0	0.037569	1	4554	4554		101.6	22.15	1	631760			5583	7403	2888	2911	5688	5688					-0.008150847531965155
AVEGPSEAK	9	Unmodified	_AVEGPSEAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2266845703125	2	444.227082	886.439611	-0.21824	-9.6946E-05	-0.3899	-0.0001732	-0.60813	-0.00027015	444.2269206813431	16.632	0.85565	16.632	15.93	16.785	0					33	17	3	0	0	0	0.098791	1	4757	4757		79.713	5.7379	1	350180			5584	7403	2888	2911	5689	5689					-0.008150847531965155
AVEKSINRK	9	Unmodified	_AVEKSINRK_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8118896484375	2	522.811648	1043.60874	0.79042	0.00041324	0.11343	5.9302E-05	0.90385	0.00047255	522.8115656355001	13.458	0.04357	13.458	13.428	13.472	0					4	2	2	0	0	0	0.28897	1	2643	2643		51.193	9.7661	1	52412			5585	5202	2889	2912	5690	5690					0.08868236600164892
AVELPQGQTI	10	Unmodified	_AVELPQGQTI_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2883911132812	2	528.290214	1054.56587	3.4674	0.0018318	-3.1929	-0.0016868	0.27455	0.00014504	528.2884162631799	50.168	0.16859	50.168	50.098	50.266	0					13	8	2	0	0	0	0.536	1	19808	19808		41.427	0.64845	1	94200	+		5586	14595	2890	2913	5691	5691					0.04077421752117516
AVEQKGLQ	8	Unmodified	_AVEQKGLQ_					0	0	0		ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7455749511719	2	436.745442	871.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.901	1	18.901	18.401	19.401	0								0	0	0	1.7419	1	5023	5023		60.972	3.1607	1				5587	4046	2891	2914	5692	5692					0.03545211863388431
AVETMPRLSP	10	Unmodified	_AVETMPRLSP_					0	0	0		ENST00000373039.4_1_20:42233685-42242527:+|nuORF	ENST00000373039.4_1_20:42233685-42242527:+|nuORF	ENST00000373039.4_1_20:42233685-42242527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.53045654296875	3	367.53047	1099.56958	-0.10928	-4.0164E-05	-0.2358	-8.6663E-05	-0.34508	-0.00012683	367.53046111181334	23.258	0.28409	23.258	23.162	23.446	0					17	6	4	0	0	0	0.44469	1	7056	7056		38.754	3.1353	1	3687600			5588	8987	2892	2915	5693	5693					0.023777682543141054
AVFASEVKK	9	Unmodified	_AVFASEVKK_					0	0	0		ENSG00000105202|ENST00000221801|FBL;FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7845153808594	2	489.784567	977.554582	-0.040657	-1.9913E-05	-1.0061	-0.00049275	-1.0467	-0.00051267	489.78395236857875	21.026	0.15345	21.026	20.945	21.098	0					11	4	3	0	0	0	0.0406	1	5711	5711		98.629	39.847	1	883850			5589	2336	2893	2916	5694	5694					0.06490644448615512
AVFASEVKK	9	Unmodified	_AVFASEVKK_					0	0	0		ENSG00000105202|ENST00000221801|FBL;FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.78472900390625	2	489.784567	977.554582	-0.45646	-0.00022357	0.94805	0.00046434	0.49159	0.00024077	489.7849601918326	21.348	0.22749	21.348	21.247	21.474	0					15	5	4	0	0	0	0.012231	1	6775	6775		136.27	40.078	1	4770100			5590	2336	2893	2916	5695	5695					0.06490644448615512
AVFASEVKK	9	Unmodified	_AVFASEVKK_					0	0	0		ENSG00000105202|ENST00000221801|FBL;FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7842712402344	2	489.784567	977.554582	-1.2095	-0.00059241	1.1156	0.00054639	-0.093968	-4.6024E-05	489.78509771207234	21.051	0.17085	21.051	20.953	21.124	0					10	5	3	0	0	0	0.063823	1	5975	5975		90.37	29.398	1	440710			5591	2336	2893	2916	5696	5696					0.06490644448615512
AVFASEVKK	9	Unmodified	_AVFASEVKK_					0	0	0		ENSG00000105202|ENST00000221801|FBL;FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7842712402344	2	489.784567	977.554582	-0.71977	-0.00035253	0.28789	0.000141	-0.43188	-0.00021153	489.7847028687774	21.248	0.26282	21.248	21.144	21.407	0					13	5	4	0	0	0	0.0049871	1	7028	7028		158.07	58.7	1	3741800			5592	2336	2893	2916	5697	5697					0.06490644448615512
AVFDGAQVTSK	11	Unmodified	_AVFDGAQVTSK_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.7927856445312	2	561.793121	1121.57169	1.2734	0.00071539	-0.62965	-0.00035373	0.64377	0.00036166	561.7927490141859	28.404	0.49538	28.404	28.082	28.577	0					35	17	4	0	0	0	0.51117	1	8917	8917		43.419	14.248	1	841460			5593	6546	2894	2917	5698	5698					0.0157652026375672
AVFDGAQVTSK	11	Unmodified	_AVFDGAQVTSK_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.7933349609375	2	561.793121	1121.57169	0.47023	0.00026417	0.036391	2.0444E-05	0.50662	0.00028462	561.7931119585428	28.678	0.52666	28.678	28.319	28.846	0					44	13	4	0	0	0	0.24586	1	10210	10210		68.786	33.634	1	4865400			5594	6546	2894	2917	5699	5699					0.0157652026375672
AVFDGAQVTSK	11	Unmodified	_AVFDGAQVTSK_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.79443359375	2	561.793121	1121.57169	0.12897	7.2456E-05	1.9439	0.0010921	2.0729	0.0011645	561.7940798617794	28.421	0.34305	28.421	28.262	28.605	0					31	12	4	0	0	0	0.067676	1	9149	9149		97.597	23.432	1	1159500			5595	6546	2894	2917	5700	5700					0.0157652026375672
AVFDGAQVTSK	11	Unmodified	_AVFDGAQVTSK_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7942504882812	2	561.793121	1121.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.44	1	28.44	27.94	28.94	0								0	0	0	0.35107	1	9170	9170		45.022	10.85	1				5596	6546	2894	2917	5701	5701					0.0157652026375672
AVFDGAQVTSK	11	Unmodified	_AVFDGAQVTSK_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7940673828125	2	561.793121	1121.57169	1.8409	0.0010342	-0.6461	-0.00036297	1.1948	0.00067124	561.7926373742109	28.67	0.70328	28.67	28.224	28.927	0					46	14	4	0	0	0	2.2655E-06	1	10523	10523		188.91	103.75	1	8969600			5597	6546	2894	2917	5702	5702					0.0157652026375672
AVFDGAQVTSK	11	Unmodified	_AVFDGAQVTSK_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7933959960938	2	561.793121	1121.57169	0.97504	0.00054777	-0.050826	-2.8554E-05	0.92422	0.00051922	561.7930840991656	28.481	0.54002	28.481	28.145	28.685	0					29	13	4	0	0	0	0.11438	1	9437	9437		86.189	27.959	1	918700			5598	6546	2894	2917	5703	5703					0.0157652026375672
AVFDGAQVTSK	11	Unmodified	_AVFDGAQVTSK_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7933959960938	2	561.793121	1121.57169	1.7895	0.0010053	-0.82039	-0.00046089	0.96915	0.00054446	561.7926439839804	28.599	0.86572	28.599	28.143	29.009	0					45	17	4	0	0	0	1.9631E-08	1	10390	10390		201.61	100.36	1	6202300			5599	6546	2894	2917	5704	5704					0.0157652026375672
AVFEETLEK	9	Unmodified	_AVFEETLEK_					0	0	0		nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B;nc|ENSG00000171204|Q8IUX1-5|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2771606445312	2	533.276772	1064.53899	2.3234	0.001239	-1.0383	-0.00055367	1.2851	0.00068532	533.2760196481685	33.308	0.4879	33.308	33.182	33.67	0					24	12	3	0	0	0	0.1424	1	12294	12294		69.628	21.97	1	275880			5600	6282	2895	2918	5705	5705					0.009303131409069465
AVFEETLEK	9	Unmodified	_AVFEETLEK_					0	0	0		nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B;nc|ENSG00000171204|Q8IUX1-5|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2777099609375	2	533.276772	1064.53899	0.71546	0.00038154	2.7627	0.0014733	3.4781	0.0018548	533.2787670307953	33.206	0.35923	33.206	33.107	33.466	0					12	7	3	0	0	0	0.12834	1	12610	12610		72.879	19.943	1	244150			5601	6282	2895	2918	5706	5706					0.009303131409069465
AVFEWHITK	9	Unmodified	_AVFEWHITK_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.8037109375	2	565.803291	1129.59203	3.4702	0.0019635	-2.4471	-0.0013846	1.0231	0.00057889	565.8021089993889	37.733	0.3046	37.733	37.582	37.886	0					10	6	2	0	0	0	0.19891	1	14787	14787		63.534	22.756	1	268670			5602	3874	2896	2919	5707	5707					0.03241735714209426
AVFFKVCDAK	10	Carbamidomethyl (C)	_AVFFKVC(Carbamidomethyl (C))DAK_	AVFFKVC(1)DAK		AVFFKVC(40)DAK		0	1	0		ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.5435791015625	3	395.542598	1183.60597	3.4771	0.0013754	-1.4229	-0.00056281	2.0542	0.00081254	395.5420564581977	12.239	0.055211	12.239	12.202	12.257	0					5	3	2	0	0	0	0.54861	1	2407	2407		40.058	16.535	1	110230			5603	23161	2897	2920	5708	5708	762				0.021506451510049374
AVFGPQLQGA	10	Unmodified	_AVFGPQLQGA_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.5115051269531	3	329.846787	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.452	1	15.452	14.952	15.952	0								0	0	0	0.4201	1	3364	3364		31.53	5.9558	1				5604	4074	2898	2921	5709	5709					0.024731872717552505
AVFGVIGSQK	10	Unmodified	_AVFGVIGSQK_					0	0	0		WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2899169921875	2	503.290017	1004.56548	-0.053849	-2.7102E-05	0.38127	0.00019189	0.32742	0.00016479	503.29021858797154	34.789	0.34777	34.789	34.701	35.049	0					40	15	4	0	0	0	0.2978	1	11375	11375		67.494	5.3863	1	782300			5605	1366	2899	2922	5710	5710					0.06338046822895649
AVFGVIGSQK	10	Unmodified	_AVFGVIGSQK_					0	0	0		WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2898254394531	2	503.290017	1004.56548	-0.063793	-3.2106E-05	-0.01046	-5.2647E-06	-0.074253	-3.7371E-05	503.29005113885273	35.07	0.43403	35.07	34.982	35.416	0					35	11	5	0	0	0	0.28675	1	13106	13106		68.846	15.909	1	4540100			5606	1366	2899	2922	5711	5711					0.06338046822895649
AVFGVIGSQK	10	Unmodified	_AVFGVIGSQK_					0	0	0		WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.28985595703125	2	503.290017	1004.56548	-0.86655	-0.00043613	0.68217	0.00034333	-0.18438	-9.2799E-05	503.29043363229255	34.87	0.32965	34.87	34.736	35.066	0					25	14	3	0	0	0	0.23612	1	11771	11771		75.043	20.267	1	378120			5607	1366	2899	2922	5712	5712					0.06338046822895649
AVFGVIGSQK	10	Unmodified	_AVFGVIGSQK_					0	0	0		WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.289794921875	2	503.290017	1004.56548	-0.49236	-0.0002478	0.2544	0.00012803	-0.23796	-0.00011976	503.2902208416566	35.092	0.49894	35.092	34.819	35.318	0					29	14	4	0	0	0	0.20981	1	13549	13549		78.264	34.147	1	1650900			5608	1366	2899	2922	5713	5713					0.06338046822895649
AVFHKFKG	8	Unmodified	_AVFHKFKG_					0	0	0		LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant;nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.77203369140625	2	467.268887	932.523222	2.6427	0.0012349	4.2938	0.0020064	6.9365	0.0032412	467.2715126645487	34.967	0.80919	34.967	34.555	35.364	0					47	16	4	0	0	0	0.67475	1	13558	13558		37.028	3.5355	1	592000			5609	3855	2900	2923	5714	5714					0.05426116205183007
AVFHLQEIAED	11	Unmodified	_AVFHLQEIAED_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.5485534667969	3	424.547065	1270.61937	3.3537	0.0014238	-1.1566	-0.00049104	2.1971	0.00093277	424.5466012138289	20.378	0.12331	20.378	20.302	20.425	0					6	3	2	0	0	0	0.60833	1	5671	5671		36.318	3.2782	1	147260			5610	7393	2901	2924	5715	5715					-0.005118255360457624
AVFKGIAADK	10	Unmodified	_AVFKGIAADK_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;SYNRG|p.N610Tfs*3|2|0.33|ENSG00000275066|chr17:37553894-37553894|T/-|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.29833984375	2	510.297842	1018.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.529	1	24.529	24.029	25.029	0								0	0	0	0.091957	1	7253	7253		81.525	31.989	1				5611	8104	2902	2925	5716	5716					0.07258333339950696
AVFKGIAADK	10	Unmodified	_AVFKGIAADK_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;SYNRG|p.N610Tfs*3|2|0.33|ENSG00000275066|chr17:37553894-37553894|T/-|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2979431152344	2	510.297842	1018.58113	-1.8092	-0.00092321	2.117	0.0010803	0.30787	0.00015711	510.29942293301457	24.604	0.19635	24.604	24.533	24.729	0					5	4	2	0	0	0	0.31894	1	7701	7701		65.157	15.621	1	72054			5612	8104	2902	2925	5717	5717					0.07258333339950696
AVFLGLARK	9	Unmodified	_AVFLGLARK_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.8107604980469	2	487.810919	973.607286	-0.0094449	-4.6073E-06	-0.6341	-0.00030932	-0.64355	-0.00031393	487.8106826352011	30.891	0.1505	30.891	30.796	30.947	0					12	6	2	0	0	0	0.50461	1	9863	9863		31.955	11.473	1	55691			5613	5381	2903	2926	5718	5718					0.11942647302078058
AVFLGLARK	9	Unmodified	_AVFLGLARK_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.8108215332031	2	487.810919	973.607286	-0.3666	-0.00017883	0.31562	0.00015396	-0.050986	-2.4871E-05	487.81103174211	31.165	0.34393	31.165	31.069	31.413	0					17	8	3	0	0	0	0.11118	1	11305	11305		76.847	19.035	1	491810			5614	5381	2903	2926	5719	5719					0.11942647302078058
AVFLGLARK	9	Unmodified	_AVFLGLARK_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.81121826171875	2	487.810919	973.607286	-1.0144	-0.00049483	0.92868	0.00045302	-0.085699	-4.1805E-05	487.8115304686083	30.921	0.12311	30.921	30.857	30.98	0					7	4	2	0	0	0	0.50461	1	10193	10193		31.955	5.1588	1	71785			5615	5381	2903	2926	5720	5720					0.11942647302078058
AVFLGLARK	9	Unmodified	_AVFLGLARK_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.8101806640625	2	487.810919	973.607286	-0.70495	-0.00034388	0.36482	0.00017796	-0.34013	-0.00016592	487.8110579668822	31.117	0.24545	31.117	31.012	31.257	0					12	5	3	0	0	0	0.25109	1	11692	11692		55.504	10.973	1	489340			5616	5381	2903	2926	5721	5721					0.11942647302078058
AVFNQTVTGI	10	Unmodified	_AVFNQTVTGI_					0	0	0		SSR1|p.V196G|1|0.43|ENSG00000124783|chr6:7298780-7298780|A/C|missense_variant	SSR1|p.V196G|1|0.43|ENSG00000124783|chr6:7298780-7298780|A/C|missense_variant	SSR1|p.V196G|1|0.43|ENSG00000124783|chr6:7298780-7298780|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.524658203125	3	350.525713	1048.55531	-0.82469	-0.00028907	-1.9171	-0.00067199	-2.7418	-0.00096106	350.5249994102712	12.993	0.088221	12.993	12.938	13.027	0					5	3	2	0	0	0	0.64162	1	2626	2626		29.17	1.2878	1	77993			5617	22492	2904	2927	5722	5722					0.03297439097673305
AVFPAISTK	9	Unmodified	_AVFPAISTK_					0	0	0		ENSG00000162896|ENST00000356495|PIGR;PIGR|p.W404Vfs*3|1|0.53|ENSG00000162896|chr1:206935654-206935655|-/C|frameshift_variant	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2733154296875	2	467.273835	932.533118	-1.0161	-0.00047481	-0.80019	-0.00037391	-1.8163	-0.00084872	467.2738960496976	34.924	0.65812	34.924	34.473	35.131	0					76	29	3	0	0	0	0.33044	1	11815	11815		47.657	5.2612	1	267120			5618	5509	2905	2928	5723	5723					0.06415259419884478
AVFPFLLSAPA	11	Unmodified	_AVFPFLLSAPA_					0	0	0			REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF	REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.21795654296875	3	378.21822	1131.63283	0.23355	8.8332E-05	-1.199	-0.00045349	-0.96547	-0.00036516	378.2178267459006	19.433	0.16488	19.433	19.33	19.495	0					7	3	3	0	0	0	0.70609	1	6157	6157		27.047	5.3616	1	161500	+		5619	19671	2906	2929	5724	5724					0.0722807703386934
AVFPPLIQK	9	Unmodified	_AVFPPLIQK_					0	0	0		ENST00000355192.7_1_12:65857378-65857441:+|nuORF	ENST00000355192.7_1_12:65857378-65857441:+|nuORF	ENST00000355192.7_1_12:65857378-65857441:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.812255859375	2	506.813128	1011.6117	1.1013	0.00055816	-1.008	-0.00051085	0.093343	4.7307E-05	506.8124017089094	40.964	0.46265	40.964	40.804	41.266	0					31	14	3	0	0	0	0.25716	1	16100	16100		47.916	12.715	1	173870			5620	8793	2907	2930	5725	5725					0.10636111725000319
AVFPSIVGRPR	11	Unmodified	_AVFPSIVGRPR_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2398986816406	3	400.240018	1197.69823	-0.36946	-0.00014787	-0.24678	-9.8771E-05	-0.61624	-0.00024664	400.23990440744967	34.098	0.57955	34.098	33.833	34.413	0					41	15	4	0	0	0	0.65797	1	12616	12616		31.634	5.5709	1	290490			5621	1545;6995;2493;7397	2908	2931	5726	5726					0.1072849127954214
AVFPSRGTELA	11	Unmodified	_AVFPSRGTELA_					0	0	0		ENST00000317829.12_1_11:94501600-94501720:+|nuORF	ENST00000317829.12_1_11:94501600-94501720:+|nuORF	ENST00000317829.12_1_11:94501600-94501720:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.20843505859375	3	383.208384	1146.60332	0.20027	7.6746E-05	0.004623	1.7716E-06	0.2049	7.8518E-05	383.2082940326101	22.696	0.30869	22.696	22.468	22.777	0					12	6	4	0	0	0	0.52595	1	7715	7715		42.338	2.4649	1	501930			5622	8588	2909	2932	5727	5727					0.03588513017712103
AVFQELKV	8	Unmodified	_AVFQELKV_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2731628417969	2	467.273835	932.533118	0.64813	0.00030285	-2.4891	-0.0011631	-1.841	-0.00086023	467.2732101505837	35.151	0.93589	35.151	34.53	35.466	0					82	26	4	0	0	0	0.43813	1	13436	13436		66.429	3.123	1	1241900			5623	4315	2910	2933	5728	5728					0.06415259419895847
AVFQIILRR	9	Unmodified	_AVFQIILRR_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;KIF2A|p.K643Rfs*4|1|0.2|ENSG00000068796|chr5:62381143-62381143|A/-|frameshift_variant;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.5731201171875	3	372.573109	1114.6975	-0.30439	-0.00011341	0.38432	0.00014319	0.079935	2.9782E-05	372.57310381519744	39.309	0.19052	39.309	39.214	39.404	0					7	4	2	0	0	0	0.54267	1	15536	15536		27.882	1.8189	1	85771			5624	1427	2911	2934	5729	5729					0.14473696630534505
AVFQKDKQDL	10	Unmodified	_AVFQKDKQDL_					0	0	0			REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.3201904296875	2	596.322045	1190.62954	0.13368	7.9719E-05	-3.1328	-0.0018682	-2.9991	-0.0017885	596.3201789695416	16.991	0.059494	16.991	16.952	17.012	0					4	2	2	0	0	0	0.65895	1	3973	3973		15.642	0	1	53234	+		5625	17316	2912	2935	5730	5730					0.04184782189190628
AVFQQLFQK	9	Unmodified	_AVFQQLFQK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000127831|P09327-2|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8114013671875	2	554.811116	1107.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.517	1	43.517	43.017	44.017	0								0	0	0	0.33579	1	16405	16405		27.882	2.3082	1				5626	3517	2913	2936	5731	5731					0.05818022231278519
AVFQQLFQK	9	Unmodified	_AVFQQLFQK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000127831|P09327-2|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.3128662109375	2	554.811116	1107.60768	1.6485	0.00091462	-0.19816	-0.00010994	1.4504	0.00080468	554.8110054050509	43.483	0.22118	43.483	43.416	43.637	0					18	11	2	0	0	0	0.07136	1	16997	16997		71.296	39.341	1	204860			5627	3517	2913	2936	5732	5732					0.05818022231278519
AVFQQLFQK	9	Unmodified	_AVFQQLFQK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000127831|P09327-2|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.3145141601562	2	554.811116	1107.60768	1.8211	0.0010103	-0.95963	-0.00053241	0.86142	0.00047793	554.810455726275	43.444	0.27868	43.444	43.357	43.636	0					19	9	3	0	0	0	0.056004	1	17367	17367		87.754	41.802	1	267250			5628	3517	2913	2936	5733	5733					0.05818022231278519
AVFSKSVQK	9	Unmodified	_AVFSKSVQK_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2899475097656	2	497.290017	992.565481	-0.30659	-0.00015246	-1.1186	-0.00055626	-1.4252	-0.00070872	497.2893217923956	19.255	0.1977	19.255	19.11	19.308	0					9	4	3	0	0	0	0.054723	1	5788	5788		93.598	40.661	1	937300			5629	1054	2914	2937	5734	5734					0.068900468229117
AVFSKSVQK	9	Unmodified	_AVFSKSVQK_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.28936767578125	2	497.290017	992.565481	-1.1531	-0.0005734	-2.232	-0.00111	-3.3851	-0.0016834	497.28883939519875	18.874	0.14357	18.874	18.827	18.97	0					7	4	2	0	0	0	0.26904	1	5049	5049		53.351	9.2347	1	141230			5630	1054	2914	2937	5735	5735					0.068900468229117
AVFSYLTGK	9	Unmodified	_AVFSYLTGK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2713623046875	2	493.271293	984.528032	0.77727	0.0003834	-2.1785	-0.0010746	-1.4013	-0.0006912	493.27044177324075	40.499	0.12124	40.499	40.45	40.571	0					7	4	2	0	0	0	0.36892	1	15439	15439		44.377	16.123	1	29680			5631	2636	2915	2938	5736	5736					0.035149555572729696
AVFVQEPVR	9	Unmodified	_AVFVQEPVR_					0	0	0			REV__ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	REV__ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.8659362792969	3	348.86607	1043.57638	0.17738	6.1882E-05	-0.31926	-0.00011138	-0.14187	-4.9495E-05	348.86594909085574	22.468	0.11655	22.468	22.384	22.501	0					5	3	2	0	0	0	0.5654	1	6365	6365		32.812	8.2932	1	85642	+		5632	15335	2916	2939	5737	5737					0.056334491971938405
AVFVTPSCP	9	Unmodified	_AVFVTPSCP_					0	0	0		ENST00000284292.10_1_11:124616312-124616468:+|nuORF	ENST00000284292.10_1_11:124616312-124616468:+|nuORF	ENST00000284292.10_1_11:124616312-124616468:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7330627441406	2	460.730946	919.447339	0.12424	5.7243E-05	3.639	0.0016766	3.7632	0.0017338	460.7326149421751	18.886	0.097069	18.886	18.816	18.913	0					5	3	2	0	0	0	0.50461	1	5608	5608		31.955	0.42505	1	82523			5633	8423	2917	2940	5738	5738					-0.01560648757265426
AVGAGLLLLG	10	Unmodified	_AVGAGLLLLG_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2838134765625	2	442.284203	882.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.338	1	39.338	38.838	39.838	0								0	0	0	0.18612	1	15539	15539		65.897	11.133	1				5634	967	2918	2941	5739	5739					0.10787849799567084
AVGAKLTWE	9	Unmodified	_AVGAKLTWE_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7668762207031	2	487.768917	973.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.332	1	12.332	11.832	12.832	0								0	0	0	0.24544	1	2433	2433		37.159	0	1				5635	11803	2919	2942	5740	5740					0.03546071414518792
AVGALGNAVIL	11	Unmodified	_AVGALGNAVIL_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.30609130859375	2	499.305667	996.596781	-0.35586	-0.00017768	0.86314	0.00043097	0.50728	0.00025329	499.3059351528496	30.469	0.37784	30.469	30.302	30.68	0					22	9	3	0	0	0	0.52595	1	10414	10414		32.812	6.1195	1	181720			5636	4197	2920	2943	5741	5741					0.09834619856997051
AVGAPAVAGVR	11	Unmodified	_AVGAPAVAGVR_					0	0	0			REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF	REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2876281738281	2	484.287808	966.561064	0.66679	0.00032292	-1.0336	-0.00050058	-0.36685	-0.00017766	484.28735637700083	14.175	0.2102	14.175	14.074	14.284	0					11	4	3	0	0	0	0.31478	1	3608	3608		60.972	0.85368	1	1268100	+		5637	18534	2921	2944	5742	5742					0.07644582399996125
AVGATAVYPI	10	Unmodified	_AVGATAVYPI_					0	0	0		ENST00000484495.5_1_7:95799231-95818686:-|nuORF;ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13;SLC25A12|p.N371Tfs*22|1|0.38|ENSG00000115840|chr2:171813398-171813398|T/-|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12;nc|ENSG00000115840|O75746-2|SLC25A12	ENST00000484495.5_1_7:95799231-95818686:-|nuORF;ENSG00000115840|ENST00000422440|SLC25A12	ENST00000484495.5_1_7:95799231-95818686:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.77325439453125	2	481.271293	960.528032	-0.29349	-0.00014125	0.6701	0.0003225	0.37661	0.00018125	481.271608941495	38.779	0.27262	38.779	38.659	38.932	0					23	14	2	0	0	0	0.64178	1	13842	13842		29.15	1.2673	1	201320			5638	946;2940	2922	2945	5743	5743					0.04618955557270965
AVGCTVVALV	10	Unmodified	_AVGCTVVALV_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF;ALDH16A1|p.A347Gfs*5|1|0.36|ENSG00000161618|chr19:49462690-49462691|-/G|frameshift_variant;ALDH16A1|p.F409Sfs*93|1|0.42|ENSG00000161618|chr19:49464152-49464152|C/-|frameshift_variant;ALDH16A1|p.A347Lfs*155|1|0.37|ENSG00000161618|chr19:49462691-49462691|G/-|frameshift_variant;ALDH16A1|p.Y528Mfs*99|1|0.33|ENSG00000161618|chr19:49465745-49465745|C/-|frameshift_variant;nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2677001953125	2	466.267696	930.520839	-0.66789	-0.00031141	-0.27308	-0.00012733	-0.94097	-0.00043874	466.2677171314958	37.771	0.22085	37.771	37.662	37.882	0					16	7	3	0	0	0	0.4943	1	14331	14331		45.952	8.7928	1	84039			5639	111	2923	2946	5744	5744					0.052798996852061464
AVGDQIRQL	9	Unmodified	_AVGDQIRQL_					0	0	0			REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.28240966796875	2	500.282723	998.550893	0.66042	0.0003304	-1.7902	-0.00089561	-1.1298	-0.00056521	500.2809059170366	24.791	0.62477	24.791	24.45	25.074	0					24	15	3	0	0	0	0.10915	1	8404	8404		77.318	11.852	1	727640	+		5640	21241	2924	2947	5745	5745					0.051559746747557256
AVGDTPIMK	9	Unmodified	_AVGDTPIMK_					0	0	0		ENST00000578331.1_1_17:71064194-71064335:-|nuORF;ENST00000508464.5_1_5:115169283-115173453:-|nuORF;ENSG00000145782|ENST00000509910|ATG12	ENST00000578331.1_1_17:71064194-71064335:-|nuORF	ENST00000578331.1_1_17:71064194-71064335:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2495422363281	2	466.249503	930.484453	-2.2592	-0.0010534	2.8496	0.0013286	0.59038	0.00027526	466.2504053670318	26.678	0.2364	26.678	26.539	26.776	0					11	5	3	0	0	0	0.17854	1	8611	8611		64.207	5.4253	1	440620			5641	4692	2925	2948	5746	5746					0.016430227884939086
AVGDTPIMK	9	Unmodified	_AVGDTPIMK_					0	0	0		ENST00000578331.1_1_17:71064194-71064335:-|nuORF;ENST00000508464.5_1_5:115169283-115173453:-|nuORF;ENSG00000145782|ENST00000509910|ATG12	ENST00000578331.1_1_17:71064194-71064335:-|nuORF	ENST00000578331.1_1_17:71064194-71064335:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2491760253906	2	466.249503	930.484453	0.65298	0.00030445	-0.94322	-0.00043978	-0.29024	-0.00013532	466.2491911776798	26.838	0.21423	26.838	26.688	26.902	0					12	4	4	0	0	0	0.16806	1	9523	9523		65.465	6.6834	1	1604400			5642	4692	2925	2948	5747	5747					0.016430227884939086
AVGDTPIMK	9	Unmodified	_AVGDTPIMK_					0	0	0		ENST00000578331.1_1_17:71064194-71064335:-|nuORF;ENST00000508464.5_1_5:115169283-115173453:-|nuORF;ENSG00000145782|ENST00000509910|ATG12	ENST00000578331.1_1_17:71064194-71064335:-|nuORF	ENST00000578331.1_1_17:71064194-71064335:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2493591308594	2	466.249503	930.484453	2.6329	0.0012276	-1.7653	-0.00082305	0.86767	0.00040455	466.2482232896358	26.829	0.31397	26.829	26.671	26.985	0					16	6	4	0	0	0	0.07136	1	9515	9515		87.696	16.401	1	2238000			5643	4692	2925	2948	5748	5748					0.016430227884939086
AVGGGYTAK	9	Unmodified	_AVGGGYTAK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.2189636230469	2	412.21906	822.423567	0.05867	2.4185E-05	-0.47918	-0.00019753	-0.42051	-0.00017334	412.21881736509374	17.862	0.17004	17.862	17.751	17.922	0					8	3	3	0	0	0	0.28897	1	5367	5367		51.193	3.2771	1	659480			5644	7618	2926	2949	5749	5749					0.005252538005606766
AVGKDYCPGL	10	Unmodified	_AVGKDYCPGL_					0	0	0		ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;ENST00000473865.1_1_2:234198871-234200845:+|nuORF	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2578735351562	2	511.75241	1021.49027	-0.13662	-6.9915E-05	3.292	0.0016847	3.1554	0.0016148	511.7539971031992	14.931	0.21286	14.931	14.816	15.029	0					16	9	2	0	0	0	0.55603	1	3180	3180		39.253	7.298	1	157670			5645	248	2927	2950	5750	5750					-0.01961878699830777
AVGKEEKG	8	Unmodified	_AVGKEEKG_					0	0	0			REV__ENST00000376851.7_1_19:51471875-51472205:-|nuORF	REV__ENST00000376851.7_1_19:51471875-51472205:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.22454833984375	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.048	1	16.048	15.548	16.548	0								0	0	0	1.7419	1	3774	3774		29.15	0	1		+		5646	18724	2928	2951	5751	5751					0.018572364549982012
AVGKNKRLTK	10	Unmodified	_AVGKNKRLTK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8564453125	2	557.85639	1113.69823	1.7303	0.00096523	-1.2296	-0.00068592	0.50069	0.00027931	557.8556785331651	13.059	0.14651	13.059	13.012	13.159	0					5	3	2	0	0	0	0.59277	1	3102	3102		35.152	6.0025	1	209410			5647	4672	2929	2952	5752	5752					0.14592491279518072
AVGKNKRLTK	10	Unmodified	_AVGKNKRLTK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.856689453125	2	557.85639	1113.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.067	1	13.067	12.567	13.567	0								0	0	0	0.38475	1	2941	2941		35.152	17.787	1				5648	4672	2929	2952	5753	5753					0.14592491279518072
AVGKSSIAK	9	Unmodified	_AVGKSSIAK_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7640075683594	2	430.763635	859.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.112	1	15.112	14.612	15.612	0								0	0	0	0.0019965	1	3833	3833		120.87	26.862	1				5649	4366	2930	2953	5754	5754					0.07734088760093982
AVGKTSFLR	9	Unmodified	_AVGKTSFLR_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7901611328125	2	489.790184	977.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.894	1	23.894	23.394	24.394	0								0	0	0	0.19847	1	6974	6974		35.618	11.416	1				5650	3617	2931	2954	5755	5755					0.07613466542761671
AVGKTSFLR	9	Unmodified	_AVGKTSFLR_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7919006347656	2	489.790184	977.565815	0.43717	0.00021412	-0.13168	-6.4496E-05	0.30549	0.00014963	489.79022625816515	24.197	0.28679	24.197	24.101	24.388	0					11	6	3	0	0	0	0.017741	1	8105	8105		109.48	56.127	1	294270			5651	3617	2931	2954	5756	5756					0.07613466542761671
AVGKTSFLR	9	Unmodified	_AVGKTSFLR_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7897644042969	2	489.790184	977.565815	-0.071912	-3.5222E-05	-0.60486	-0.00029625	-0.67677	-0.00033148	489.78982733292275	24.121	0.2665	24.121	24.012	24.278	0					9	5	3	0	0	0	0.015992	1	8411	8411		112.41	40.533	1	423720			5652	3617	2931	2954	5757	5757					0.07613466542761671
AVGKTSFLR	9	Unmodified	_AVGKTSFLR_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7901916503906	2	489.790184	977.565815	-0.52613	-0.0002577	0.015402	7.544E-06	-0.51073	-0.00025015	489.7903694781919	24.139	0.16761	24.139	24.028	24.196	0					5	3	2	0	0	0	0.41958	1	8299	8299		19.104	0	1	123670			5653	3617	2931	2954	5758	5758					0.07613466542761671
AVGKTSFLR	9	Unmodified	_AVGKTSFLR_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.86248779296875	3	326.862548	977.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.135	1	24.135	23.635	24.635	0								0	0	0	0.22075	1	8283	8283		47.96	3.5823	1				5654	3617	2931	2954	5759	5759					0.07613466542761671
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.2862854003906	2	434.286746	866.558939	0.20514	8.9089E-05	-0.47132	-0.00020469	-0.26618	-0.0001156	434.2864900198238	34.223	0.38274	34.223	34.091	34.474	0					39	17	3	0	0	0	0.11118	1	11151	11151		76.847	26.822	1	780810			5655	5466	2932	2955	5760	5760					0.12032153662175915
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.2865295410156	2	434.286746	866.558939	-0.80957	-0.00035159	0.47249	0.0002052	-0.33708	-0.00014639	434.2869185227483	34.288	0.33414	34.288	34.144	34.478	0					38	15	3	0	0	0	0.018785	1	11527	11527		123.99	55.504	1	926700			5656	5466	2932	2955	5761	5761					0.12032153662175915
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.28704833984375	2	434.286746	866.558939	-0.44776	-0.00019446	-0.076109	-3.3053E-05	-0.52387	-0.00022751	434.2866733439256	34.507	0.40128	34.507	34.345	34.746	0					25	10	4	0	0	0	0.05357	1	13280	13280		94.006	28.203	1	1834700			5657	5466	2932	2955	5762	5762					0.12032153662175915
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.286865234375	2	434.286746	866.558939	0.22484	9.7643E-05	-0.42166	-0.00018312	-0.19682	-8.5478E-05	434.2866057860958	34.241	0.33884	34.241	34.141	34.48	0					25	11	3	0	0	0	0.14734	1	12083	12083		68.485	34.969	1	591620			5658	5466	2932	2955	5763	5763					0.12032153662175915
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.286865234375	2	434.286746	866.558939	-0.55749	-0.00024211	0.16199	7.035E-05	-0.3955	-0.00017176	434.28678500000007	34.284	0.41201	34.284	34.13	34.542	0					36	13	4	0	0	0	0.097811	1	12076	12076		79.939	37.465	1	1292200			5659	5466	2932	2955	5764	5764					0.12032153662175915
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.28662109375	2	434.286746	866.558939	-0.51399	-0.00022322	0.34207	0.00014856	-0.17192	-7.4662E-05	434.2868276583821	34.451	0.60393	34.451	34.196	34.8	0					33	12	4	0	0	0	0.043797	1	13169	13169		97.473	39.661	1	3945800			5660	5466	2932	2955	5765	5765					0.12032153662175915
AVGNIKVTK	9	Unmodified	_AVGNIKVTK_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2921142578125	2	465.292559	928.570566	-0.82854	-0.00038551	-0.021694	-1.0094E-05	-0.85023	-0.00039561	465.2925245513143	19.558	0.14221	19.558	19.484	19.626	0					9	4	3	0	0	0	0.026848	1	5313	5313		112.11	41.291	1	790780			5661	757	2933	2956	5766	5766					0.10342350685505153
AVGNIKVTK	9	Unmodified	_AVGNIKVTK_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.29248046875	2	465.292559	928.570566	0.67727	0.00031513	-1.3405	-0.00062371	-0.66321	-0.00030859	465.2919360370377	19.766	0.26861	19.766	19.659	19.927	0					12	5	4	0	0	0	0.012936	1	6293	6293		134.77	47.069	1	3841800			5662	757	2933	2956	5767	5767					0.10342350685505153
AVGNIKVTK	9	Unmodified	_AVGNIKVTK_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.292236328125	2	465.292559	928.570566	-0.52515	-0.00024435	0.30755	0.0001431	-0.2176	-0.00010125	465.29264431596954	19.579	0.13802	19.579	19.492	19.63	0					6	3	2	0	0	0	0.02953	1	5336	5336		109.48	27.238	1	632560			5663	757	2933	2956	5768	5768					0.10342350685505153
AVGNIKVTK	9	Unmodified	_AVGNIKVTK_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.29217529296875	2	465.292559	928.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.751	1	19.751	19.251	20.251	0								0	0	0	0.009986	1	6161	6161		159.28	71.579	1				5664	757	2933	2956	5769	5769					0.10342350685505153
AVGPHLSK	8	Unmodified	_AVGPHLSK_					0	0	0		SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant;ENSG00000144671|ENST00000448498|SLC22A14;ENST00000496724.1_1_3:38347478-38348849:+|nuORF;SLC22A14|p.A280Rfs*13|1|0.08|ENSG00000144671|chr3:38309015-38309016|-/CGGGACACTGCTTTTTT|frameshift_variant	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.7374572753906	2	404.73742	807.460287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.221	1	17.221	16.721	17.721	0								0	0	0	1.7419	1	4066	4066		21.96	6.3237	1				5665	4630	2934	2957	5770	5770					0.04885550417145623
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2634582519531	2	447.263802	892.513051	0.60906	0.00027241	-1.327	-0.00059353	-0.71795	-0.00032112	447.26322812391413	19.668	0.31439	19.668	19.481	19.795	0					11	7	2	0	0	0	0.39215	1	5990	5990		42.396	1.8235	1	187910			5666	7076	2935	2958	5771	5771					0.06249508479936594
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.2636413574219	2	447.263802	892.513051	-1.1723	-0.00052434	0.57694	0.00025804	-0.59538	-0.00026629	447.2641874945247	19.344	0.26904	19.344	19.187	19.456	0					18	8	3	0	0	0	0.12239	1	5231	5231		74.255	10.949	1	184580			5667	7076	2935	2958	5772	5772					0.06249508479936594
AVGPKVALK	9	Unmodified	_AVGPKVALK_					0	0	0		ENST00000559018.1_1_10:135076662-135077335:-|nuORF;nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	ENST00000559018.1_1_10:135076662-135077335:-|nuORF	ENST00000559018.1_1_10:135076662-135077335:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.7917175292969	2	441.792195	881.569838	-0.082484	-3.6441E-05	-0.47191	-0.00020848	-0.55439	-0.00024492	441.79196220707934	22.229	0.23452	22.229	22.089	22.323	0					9	5	2	0	0	0	0.099922	1	7179	7179		79.451	23.947	1	198090			5668	4976	2936	2959	5773	5773					0.12431556036460734
AVGPPTTVR	9	Unmodified	_AVGPPTTVR_					0	0	0		ENST00000521946.5_1_8:70505207-70554528:+|nuORF;ENSG00000137573|ENST00000402687|SULF1	ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENST00000521946.5_1_8:70505207-70554528:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.26080322265625	2	449.261259	896.507966	0.06322	2.8402E-05	-0.79545	-0.00035736	-0.73223	-0.00032896	449.26086644762285	23.186	0.34016	23.186	22.968	23.309	0					15	10	2	0	0	0	0.42902	1	6647	6647		39.253	5.0803	1	91908			5669	4175	2937	2960	5774	5774					0.055572046173210765
AVGPPTTVR	9	Unmodified	_AVGPPTTVR_					0	0	0		ENST00000521946.5_1_8:70505207-70554528:+|nuORF;ENSG00000137573|ENST00000402687|SULF1	ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENST00000521946.5_1_8:70505207-70554528:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2615966796875	2	449.261259	896.507966	0.55389	0.00024884	-1.0478	-0.00047072	-0.49387	-0.00022188	449.26090108676243	23.207	0.53501	23.207	22.838	23.373	0					16	12	2	0	0	0	0.47038	1	7023	7023		35.618	0	1	55578			5670	4175	2937	2960	5775	5775					0.055572046173210765
AVGPPTTVR	9	Unmodified	_AVGPPTTVR_					0	0	0		ENST00000521946.5_1_8:70505207-70554528:+|nuORF;ENSG00000137573|ENST00000402687|SULF1	ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENST00000521946.5_1_8:70505207-70554528:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.26104736328125	2	449.261259	896.507966	-0.39714	-0.00017842	-0.36643	-0.00016462	-0.76357	-0.00034304	449.2611753458188	23.407	0.66312	23.407	22.939	23.602	0					34	13	4	0	0	0	0.39215	1	7890	7890		42.396	0	1	552420			5671	4175	2937	2960	5776	5776					0.055572046173210765
AVGPRARPRPA	11	Unmodified	_AVGPRARPRPA_					0	0	0			REV__ENST00000274311.2_1_5:52084187-52095747:+|nuORF	REV__ENST00000274311.2_1_5:52084187-52095747:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	383.2324523925781	3	383.231746	1146.67341	3.517	0.0013478	-1.9061	-0.00073046	1.611	0.00061737	383.2312047619602	22.535	0.10635	22.535	22.479	22.585	0					5	3	2	0	0	0	0.78029	1	6662	6662		19.263	19.263	1	34455	+		5672	17573	2938	2961	5777	5777					0.10593856196851448
AVGQESPGGL	10	Unmodified	_AVGQESPGGL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.732421875	2	457.732532	913.45051	-0.40151	-0.00018378	-0.078099	-3.5749E-05	-0.4796	-0.00021953	457.7326261872377	22.38	0.19984	22.38	22.27	22.47	0					9	5	2	0	0	0	0.62235	1	6295	6295		31.53	0.96095	1	66151			5673	3238	2939	2962	5778	5778					-0.009676823788936417
AVGRLVWHEP	10	Unmodified	_AVGRLVWHEP_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.5487976074219	3	388.548852	1162.62473	-0.68472	-0.00026605	-3.4455	-0.0013387	-4.1302	-0.0016048	388.5475390801969	18.629	0.54217	18.629	18.321	18.863	0					13	11	2	0	0	0	0.65051	1	5529	5529		28.081	2.0181	1	402940	+		5674	12992	2940	2963	5779	5779					0.04991942837091301
AVGSAVVNK	9	Unmodified	_AVGSAVVNK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7478332519531	2	422.747985	843.481417	0.37412	0.00015816	-0.082924	-3.5056E-05	0.2912	0.0001231	422.74769441820257	18.688	0.078583	18.688	18.654	18.733	0					4	2	2	0	0	0	0.26904	1	4700	4700		53.351	16.192	1	73737			5675	4948	2941	2964	5780	5780					0.05341515726001944
AVGSAVVNK	9	Unmodified	_AVGSAVVNK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.7483825683594	2	422.747985	843.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.726	1	18.726	18.226	19.226	0								0	0	0	0.1633	1	4944	4944		56.721	14.325	1				5676	4948	2941	2964	5781	5781					0.05341515726001944
AVGTLQEAK	9	Unmodified	_AVGTLQEAK_					0	0	0		ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR	ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7585144042969	2	458.758549	915.502546	-0.4148	-0.00019029	-0.14558	-6.6787E-05	-0.56038	-0.00025708	458.75865041079885	20.457	0.14903	20.457	20.371	20.52	0					8	5	2	0	0	0	0.054723	1	5472	5472		93.598	16.823	1	159250			5677	6094	2942	2965	5782	5782					0.04141481034844219
AVGTLQEAK	9	Unmodified	_AVGTLQEAK_					0	0	0		ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR	ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.75811767578125	2	458.758549	915.502546	-0.65284	-0.0002995	-0.32969	-0.00015125	-0.98254	-0.00045075	458.7584532451573	20.79	0.33663	20.79	20.594	20.931	0					12	7	2	0	0	0	0.047855	1	6519	6519		96.034	13.283	1	1286000			5678	6094	2942	2965	5783	5783					0.04141481034844219
AVGTLQEAK	9	Unmodified	_AVGTLQEAK_					0	0	0		ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR	ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7587585449219	2	458.758549	915.502546	-0.9601	-0.00044045	0.62298	0.0002858	-0.33711	-0.00015465	458.7588463650016	20.499	0.19849	20.499	20.398	20.597	0					15	6	3	0	0	0	0.035106	1	5727	5727		104.01	5.4316	1	345330			5679	6094	2942	2965	5784	5784					0.04141481034844219
AVGTLQEAK	9	Unmodified	_AVGTLQEAK_					0	0	0		ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR	ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7583312988281	2	458.758549	915.502546	0.72197	0.00033121	-1.0988	-0.00050407	-0.3768	-0.00017286	458.75798677577797	20.721	0.46619	20.721	20.612	21.078	0					11	9	2	0	0	0	0.035106	1	6745	6745		104.01	10.818	1	1856900			5680	6094	2942	2965	5785	5785					0.04141481034844219
AVGTLQEAK	9	Unmodified	_AVGTLQEAK_					0	0	0		ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR	ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.75848388671875	2	458.758549	915.502546	0.089711	4.1156E-05	-0.51598	-0.00023671	-0.42627	-0.00019555	458.7582993336391	20.551	0.1355	20.551	20.477	20.612	0					5	3	2	0	0	0	0.12834	1	5797	5797		72.879	1.0018	1	209060			5681	6094	2942	2965	5786	5786					0.04141481034844219
AVGTLQEAK	9	Unmodified	_AVGTLQEAK_					0	0	0		ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR	ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7585144042969	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.691	1	20.691	20.191	21.191	0								0	0	0	0.01209	1	6613	6613		168.26	14.14	1				5682	6094	2942	2965	5787	5787					0.04141481034844219
AVGVPIKVK	9	Unmodified	_AVGVPIKVK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.8074951171875	2	455.807845	909.601138	-0.37685	-0.00017177	-0.26216	-0.0001195	-0.63901	-0.00029127	455.8076616009816	25.71	0.22976	25.71	25.64	25.87	0					10	4	3	0	0	0	0.23186	1	7766	7766		57.811	9.8957	1	293860			5683	3575	2943	2966	5788	5788					0.14272129070559458
AVGVPIKVK	9	Unmodified	_AVGVPIKVK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.8077087402344	2	455.807845	909.601138	-0.5941	-0.00027079	0.13807	6.2932E-05	-0.45603	-0.00020786	455.807885609442	26.039	0.21853	26.039	25.946	26.164	0					17	5	4	0	0	0	0.087582	1	8922	8922		82.305	36.353	1	1980100			5684	3575	2943	2966	5789	5789					0.14272129070559458
AVGVPIKVK	9	Unmodified	_AVGVPIKVK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.807373046875	2	455.807845	909.601138	-1.1157	-0.00050853	0.51173	0.00023325	-0.60393	-0.00027527	455.8080585817672	25.757	0.077621	25.757	25.683	25.76	0					6	2	3	0	0	0	0.077948	1	8042	8042		85.359	25.066	1	376760			5685	3575	2943	2966	5790	5790					0.14272129070559458
AVGVPIKVK	9	Unmodified	_AVGVPIKVK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.8077392578125	2	455.807845	909.601138	-0.54491	-0.00024837	0.3779	0.00017225	-0.16701	-7.6126E-05	455.80796312524615	26.009	0.36182	26.009	25.901	26.263	0					15	7	3	0	0	0	0.087582	1	9267	9267		82.305	24.494	1	2800200			5686	3575	2943	2966	5791	5791					0.14272129070559458
AVHDITVAY	9	Unmodified	_AVHDITVAY_					0	0	0		ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.75860595703125	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.345	1	33.345	32.845	33.845	0								0	0	0	0.27166	1	11186	11186		40.573	3.4135	1				5687	6398	2944	2967	5792	5792					0.00829481034827495
AVHDITVAY	9	Unmodified	_AVHDITVAY_					0	0	0		ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7587890625	2	494.758549	987.502546	-0.7569	-0.00037448	0.68528	0.00033905	-0.071623	-3.5436E-05	494.75883563898617	33.554	0.29565	33.554	33.418	33.713	0					18	7	4	0	0	0	0.18605	1	12840	12840		63.306	2.3343	1	1159400			5688	6398	2944	2967	5793	5793					0.00829481034827495
AVHDITVAY	9	Unmodified	_AVHDITVAY_					0	0	0		ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.75836181640625	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.501	1	33.501	33.001	34.001	0								0	0	0	0.22106	1	12740	12740		47.916	7.343	1				5689	6398	2944	2967	5794	5794					0.00829481034827495
AVHNTAVL	8	Unmodified	_AVHNTAVL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.7345886230469	2	412.734877	823.455202	-2.315	-0.00095547	2.1286	0.00087857	-0.18632	-7.6902E-05	412.73575096480886	27.409	0.17398	27.409	27.32	27.494	0					6	4	2	0	0	0	0.44433	1	8968	8968		65.803	2.4969	1	138520			5690	2079	2945	2968	5795	5795					0.03641246554514055
AVHPAMNLGS	10	Unmodified	_AVHPAMNLGS_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-2|USP43	REV__nc|ENSG00000154914|Q70EL4-2|USP43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.25091552734375	2	498.750201	995.48585	0.85028	0.00042408	1.631	0.00081347	2.4813	0.0012375	499.25169370477187	26.059	0.84115	26.059	25.636	26.477	0					37	15	4	0	0	0	0.54197	1	9275	9275		40.778	7.9657	1	3737800	+		5691	15581	2946	2969	5796	5796					-0.012073431227349829
AVIANWSDVAA	11	Unmodified	_AVIANWSDVAA_					0	0	0			REV__ENST00000495008.5_1_3:108373019-108406879:+|nuORF	REV__ENST00000495008.5_1_3:108373019-108406879:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.862060546875	3	372.860984	1115.56112	3.2184	0.0012	-0.43413	-0.00016187	2.7842	0.0010381	372.8608717503285	18.626	0.44088	18.626	18.489	18.929	0					12	9	2	0	0	0	0.59682	1	5635	5635		25.126	0	1	882980	+		5692	17450	2947	2970	5797	5797					0.007965376093352461
AVIDSGVCR	9	Unmodified	_AVIDSGVCR_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2366638183594	2	460.236927	918.459301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.673	1	26.673	26.173	27.173	0								0	0	0	0.1633	1	9230	9230		56.721	4.4219	1				5693	1131	2948	2971	5798	5798					-0.003190320140674885
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7796936035156	2	478.779816	955.545079	0.020538	9.833E-06	-0.79244	-0.0003794	-0.7719	-0.00036957	478.7794146223532	33.398	0.23004	33.398	33.313	33.543	0					17	7	3	0	0	0	0.055856	1	10843	10843		93.195	32.224	1	538320			5694	1382	2949	2972	5799	5799					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.77825927734375	2	478.779816	955.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.523	1	33.523	33.023	34.023	0								0	0	0	0.099216	1	10911	10911		71.877	21.853	1				5695	1382	2949	2972	5800	5800					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7793884277344	2	478.779816	955.545079	-0.031591	-1.5125E-05	-0.80795	-0.00038683	-0.83955	-0.00040196	478.77940661894985	33.393	0.22469	33.393	33.307	33.532	0					11	7	2	0	0	0	0.19605	1	10849	10849		62.107	3.3255	1	260690			5696	1382	2949	2972	5801	5801					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7795715332031	2	478.779816	955.545079	0.44719	0.00021411	-1.027	-0.00049171	-0.5798	-0.0002776	478.7793024767763	33.624	0.31555	33.624	33.538	33.854	0					22	8	4	0	0	0	0.021961	1	12445	12445		118.74	33.828	1	2512300			5697	1382	2949	2972	5802	5802					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.77960205078125	2	478.779816	955.545079	-0.2574	-0.00012324	-0.35077	-0.00016794	-0.60817	-0.00029118	478.77966018569464	33.62	0.17244	33.62	33.525	33.698	0					11	4	3	0	0	0	0.048471	1	12452	12452		95.815	5.4453	1	1351800			5698	1382	2949	2972	5803	5803					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7794189453125	2	478.779816	955.545079	-0.31848	-0.00015248	-0.525	-0.00025136	-0.84348	-0.00040384	478.7795726802485	33.438	0.25063	33.438	33.33	33.58	0					20	7	4	0	0	0	0.032052	1	11717	11717		107.01	32.752	1	629940			5699	1382	2949	2972	5804	5804					0.0655287616308442
AVIEDTWHY	9	Unmodified	_AVIEDTWHY_					0	0	0		nc|ENSG00000052802|Q15800-2|MSMO1;ENSG00000052802|ENST00000261507|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.266845703125	2	567.266739	1132.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.271	1	41.271	40.771	41.771	0								0	0	0	0.19749	1	16405	16405		51.335	23.453	1				5700	1258	2950	2973	5805	5805					-0.042034377990376015
AVIEHLKQK	9	Unmodified	_AVIEHLKQK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.3246459960938	2	533.324391	1064.63423	0.44896	0.00023944	0.1673	8.9225E-05	0.61626	0.00032867	533.3244283102887	17.953	0.20076	17.953	17.868	18.069	0					9	5	3	0	0	0	0.017421	1	4392	4392		110.12	35.865	1	554970			5701	314	2951	2974	5806	5806					0.1044971112262374
AVIEHLKQK	9	Unmodified	_AVIEHLKQK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.32470703125	2	533.324391	1064.63423	0.1397	7.4507E-05	0.47408	0.00025284	0.61379	0.00032735	533.3246780808987	18.287	0.27467	18.287	18.198	18.473	0					15	6	3	0	0	0	0.012936	1	5330	5330		131.03	40.662	1	3019900			5702	314	2951	2974	5807	5807					0.1044971112262374
AVIEHLKQK	9	Unmodified	_AVIEHLKQK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.3245849609375	2	533.324391	1064.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.997	1	17.997	17.497	18.497	0								0	0	0	0.18541	1	4625	4625		54.776	15.523	1				5703	314	2951	2974	5808	5808					0.1044971112262374
AVIEHLKQK	9	Unmodified	_AVIEHLKQK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.3245849609375	2	533.324391	1064.63423	0.28948	0.00015438	0.15462	8.2462E-05	0.44409	0.00023685	533.3244564462462	18.233	0.22176	18.233	18.122	18.344	0					6	4	2	0	0	0	0.017421	1	5571	5571		110.12	19.75	1	1255100			5704	314	2951	2974	5809	5809					0.1044971112262374
AVIENLPKK	9	Unmodified	_AVIENLPKK_					0	0	0		DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	337.87811279296875	3	337.878087	1010.61243	0.66391	0.00022432	-0.55841	-0.00018868	0.1055	3.5646E-05	337.87790272907006	23.184	0.18348	23.184	23.093	23.277	0					13	4	4	0	0	0	0.25716	1	7649	7649		54.776	11.912	1	2056000			5705	756	2952	2975	5810	5810					0.1075490637402936
AVIENLPKK	9	Unmodified	_AVIENLPKK_					0	0	0		DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.3133850097656	2	506.313492	1010.61243	-0.37449	-0.00018961	0.2185	0.00011063	-0.156	-7.8983E-05	506.3135665601866	23.086	0.21769	23.086	22.978	23.195	0					12	4	4	0	0	0	0.021015	1	7915	7915		115.49	41.239	1	1749700			5706	756	2952	2975	5811	5811					0.1075490637402936
AVIENLPKK	9	Unmodified	_AVIENLPKK_					0	0	0		DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	337.8782043457031	3	337.878087	1010.61243	0.5314	0.00017955	0.067866	2.2931E-05	0.59927	0.00020248	337.8779849955678	23	0.095942	23	22.923	23.019	0					4	2	2	0	0	0	0.42902	1	6944	6944		39.253	13.679	1	58210			5707	756	2952	2975	5812	5812					0.1075490637402936
AVIENLPKK	9	Unmodified	_AVIENLPKK_					0	0	0		DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	DDX10|p.I301Nfs*59|1|0.09|ENSG00000178105|chr11:108688982-108688983|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.87799072265625	3	337.878087	1010.61243	-0.018105	-6.1172E-06	-0.052303	-1.7672E-05	-0.070408	-2.3789E-05	337.87801496766167	23.092	0.21046	23.092	22.99	23.201	0					13	4	4	0	0	0	0.35021	1	7765	7765		45.972	0	1	1210600			5708	756	2952	2975	5813	5813					0.1075490637402936
AVIESVKVV	9	Unmodified	_AVIESVKVV_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2948303222656	2	472.294768	942.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.573	1	39.573	39.073	40.073	0								0	0	0	0.28996	1	14099	14099		37.159	0.13063	1		+		5709	15956	2953	2976	5814	5814					0.10139815108436778
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3140258789062	2	537.313689	1072.61282	1.3957	0.0007499	-0.5851	-0.00031438	0.81055	0.00043552	537.3134372875423	33.772	0.33802	33.772	33.682	34.02	0					36	13	4	0	0	0	0.00119	1	10992	10992		136.99	70.027	1	1370000			5710	2543	2954	2977	5815	5815					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3141479492188	2	537.313689	1072.61282	1.8767	0.0010084	-0.69979	-0.00037601	1.1769	0.00063235	537.313266310591	34.004	0.63325	34.004	33.906	34.54	0					37	15	4	0	0	0	0.017706	1	13076	13076		114.86	42.615	1	11021000			5711	2543	2954	2977	5816	5816					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.314697265625	2	537.313689	1072.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.85	1	33.85	33.35	34.35	0								0	0	0	0.31916	1	11924	11924		47.96	0.30219	1				5712	2543	2954	2977	5817	5817					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3141479492188	2	537.313689	1072.61282	1.0307	0.00055379	-0.18111	-9.7312E-05	0.84956	0.00045648	537.31357305539	33.81	0.32726	33.81	33.712	34.039	0					28	9	4	0	0	0	0.00119	1	11899	11899		136.99	55.464	1	2599300			5713	2543	2954	2977	5818	5818					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3140869140625	2	537.313689	1072.61282	0.69742	0.00037473	0.45621	0.00024513	1.1536	0.00061986	537.3138995327527	33.965	0.43062	33.965	33.782	34.212	0					19	9	4	0	0	0	0.071119	1	12957	12957		99.013	56.149	1	1859800			5714	2543	2954	2977	5819	5819					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3140258789062	2	537.313689	1072.61282	1.976	0.0010617	-0.85189	-0.00045773	1.1241	0.00060398	537.3130807140867	33.997	0.45192	33.997	33.892	34.344	0					28	9	4	0	0	0	0.00035891	1	12968	12968		136.99	73.563	1	12288000			5715	2543	2954	2977	5820	5820					0.07942281303235177
AVIGAGVSGLI	11	Unmodified	_AVIGAGVSGLI_					0	0	0		ENST00000493513.1_1_1:171154462-171155083:+|nuORF;FMO2|p.Y103Ifs*10|1|0.41|ENSG00000094963|chr1:171193504-171193505|-/A|frameshift_variant;ENST00000462643.2_1_1:171154426-171162550:+|nuORF;ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	ENST00000493513.1_1_1:171154462-171155083:+|nuORF	ENST00000493513.1_1_1:171154462-171155083:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7912902832031	2	478.792392	955.570232	-1.4411	-0.00068999	0.76474	0.00036615	-0.67637	-0.00032384	478.7929165794503	34.745	0.28408	34.745	34.635	34.919	0					16	13	2	0	0	0	0.33433	1	11767	11767		58.782	5.8453	1	63306			5716	1889	2955	2978	5821	5821					0.09066930965661868
AVIGAVYRK	9	Unmodified	_AVIGAVYRK_					0	0	0		nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF	nc|ENSG00000103222|P33527-6|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.800537109375	2	488.800552	975.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.217	1	23.217	22.717	23.717	0								0	0	0	0.28164	1	7969	7969		38.806	5.2906	1				5717	2222	2956	2979	5822	5822					0.09778056922425549
AVIGGVAVGVV	11	Unmodified	_AVIGGVAVGVV_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.794677734375	2	470.794935	939.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.299	1	35.299	34.799	35.799	0								0	0	0	0.42301	1	11569	11569		31.955	1.4512	1				5718	4505	2957	2980	5823	5823					0.10311234828293436
AVIGKGGKNIK	11	Unmodified	_AVIGKGGKNIK_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF;ENST00000483135.1_1_9:86591819-86593167:-|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.8452758789062	2	542.84549	1083.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.884	1	15.884	15.384	16.384	0								0	0	0	0.33523	1	3531	3531		37.812	2.1932	1				5719	5762	2958	2981	5824	5824					0.1379368653099391
AVIGNNKQK	9	Unmodified	_AVIGNNKQK_					0	0	0		nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000463485.5_1_3:137940771-137947769:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.284912109375	2	486.285266	970.555979	-0.2936	-0.00014277	-0.13494	-6.5618E-05	-0.42853	-0.00020839	486.2850203695529	13.779	0.24337	13.779	13.733	13.976	0					12	6	3	0	0	0	0.0090636	1	3217	3217		143.02	32.899	1	860360			5720	2834	2959	2982	5825	5825					0.06952278537380607
AVIGNNKQK	9	Unmodified	_AVIGNNKQK_					0	0	0		nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000463485.5_1_3:137940771-137947769:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.284912109375	2	486.285266	970.555979	-0.68653	-0.00033385	0.13881	6.7503E-05	-0.54772	-0.00026635	486.2853344113909	13.817	0.1518	13.817	13.721	13.873	0					7	3	3	0	0	0	0.015835	1	3436	3436		128.86	18.741	1	559660			5721	2834	2959	2982	5826	5826					0.06952278537380607
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.27166748046875	2	479.271824	956.529095	0.0015046	7.2113E-07	-0.58366	-0.00027973	-0.58216	-0.00027901	479.271473222606	22.354	0.26126	22.354	22.27	22.532	0					16	7	4	0	0	0	0.023928	1	6298	6298		115.49	22.299	1	1143300			5722	3398	2960	2983	5827	5827					0.049091699261907706
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.27154541015625	2	479.271824	956.529095	-0.23138	-0.0001109	-0.2074	-9.9402E-05	-0.43878	-0.0002103	479.2717370248821	22.684	0.33908	22.684	22.548	22.887	0					23	8	5	0	0	0	0.0080613	1	7408	7408		145.16	31.744	1	5935700			5723	3398	2960	2983	5828	5828					0.049091699261907706
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2715148925781	2	479.271824	956.529095	-1.4206	-0.00068085	0.71432	0.00034235	-0.70627	-0.00033849	479.272154861937	22.401	0.27853	22.401	22.326	22.604	0					21	8	4	0	0	0	0.02953	1	6573	6573		109.48	26.728	1	1387300			5724	3398	2960	2983	5829	5829					0.049091699261907706
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.27215576171875	2	479.271824	956.529095	-0.22536	-0.00010801	-0.02514	-1.2049E-05	-0.2505	-0.00012006	479.27222738894466	22.43	0.092953	22.43	22.342	22.435	0					4	2	2	0	0	0	0.078509	1	6591	6591		85.161	23.053	1	93896			5725	3398	2960	2983	5830	5830					0.049091699261907706
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2717590332031	2	479.271824	956.529095	-0.46764	-0.00022413	0.49845	0.00023889	0.030802	1.4763E-05	479.2720011763748	22.592	0.2089	22.592	22.485	22.693	0					6	4	2	0	0	0	0.056004	1	7680	7680		93.143	7.9824	1	443030			5726	3398	2960	2983	5831	5831					0.049091699261907706
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2716979980469	2	479.271824	956.529095	0.90446	0.00043348	-1.1989	-0.00057462	-0.29448	-0.00014113	479.27117401439057	22.581	0.31768	22.581	22.421	22.739	0					14	6	4	0	0	0	0.01873	1	7545	7545		124.08	17.073	1	1225900			5727	3398	2960	2983	5832	5832					0.049091699261907706
AVIGPDVFAK	10	Unmodified	_AVIGPDVFAK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7928771972656	2	508.792392	1015.57023	0.94923	0.00048296	0.33282	0.00016933	1.282	0.0006523	508.7926358558794	39.297	0.26098	39.297	39.2	39.461	0					23	15	2	0	0	0	0.61187	1	12761	12761		32.812	0.85756	1	107720			5728	8044;11109	2961	2984	5833	5833					0.06306930965661195
AVIGPDVFAK	10	Unmodified	_AVIGPDVFAK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.79168701171875	2	508.792392	1015.57023	0.91705	0.00046659	-0.35458	-0.00018041	0.56248	0.00028618	508.79210860758167	39.636	0.49049	39.636	39.434	39.924	0					42	19	3	0	0	0	0.49411	1	15053	15053		45.972	0.020292	1	777650			5729	8044;11109	2961	2984	5834	5834					0.06306930965661195
AVIGPDVFAK	10	Unmodified	_AVIGPDVFAK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.29412841796875	2	508.792392	1015.57023	-0.54627	-0.00027794	1.0834	0.00055125	0.53718	0.00027331	508.7929292032378	39.383	0.23463	39.383	39.242	39.477	0					25	13	2	0	0	0	0.56931	1	13222	13222		37.812	2.6108	1	130450			5730	8044;11109	2961	2984	5835	5835					0.06306930965661195
AVIGPDVFAK	10	Unmodified	_AVIGPDVFAK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7926330566406	2	508.792392	1015.57023	0.15505	7.8887E-05	1.0183	0.00051809	1.1733	0.00059698	508.7929098037163	39.397	0.2734	39.397	39.239	39.512	0					31	15	3	0	0	0	0.49411	1	14026	14026		45.972	5.1941	1	118730			5731	8044;11109	2961	2984	5836	5836					0.06306930965661195
AVIGPDVFAK	10	Unmodified	_AVIGPDVFAK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.79278564453125	2	508.792392	1015.57023	-0.068462	-3.4833E-05	0.22559	0.00011478	0.15713	7.9947E-05	508.7924907314746	39.535	0.42063	39.535	39.348	39.768	0					23	9	4	0	0	0	0.44601	1	15601	15601		51.193	15.574	1	507550			5732	8044;11109	2961	2984	5837	5837					0.06306930965661195
AVIGPGAFAGL	11	Unmodified	_AVIGPGAFAGL_					0	0	0		ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.777587890625	2	486.779285	971.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.799	1	31.799	31.299	32.299	0								0	0	0	0.38303	1	10236	10236		40.573	3.4135	1				5733	6914	2962	2985	5838	5838					0.057106617941940385
AVIGSEFIGI	10	Unmodified	_AVIGSEFIGI_					0	0	0		ENSG00000141096|ENST00000268793|DPEP3	ENSG00000141096|ENST00000268793|DPEP3	ENSG00000141096|ENST00000268793|DPEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2825012207031	2	503.2844	1004.55425	1.0016	0.00050409	-2.8609	-0.0014399	-1.8593	-0.00093576	503.2831061673942	40.223	0.66193	40.223	39.763	40.425	0					34	24	2	0	0	0	0.42631	1	15850	15850		53.351	3.9099	1	211700			5734	4428	2963	2986	5839	5839					0.0521522472874949
AVIISENLQ	9	Unmodified	_AVIISENLQ_					0	0	0			REV__ENST00000419830.2_1_15:50786258-50791282:+|nuORF	REV__ENST00000419830.2_1_15:50786258-50791282:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7792053222656	2	493.779482	985.544411	0.027529	1.3593E-05	-0.12278	-6.0625E-05	-0.095248	-4.7031E-05	493.77938862200114	28.237	0.50084	28.237	27.952	28.453	0					25	12	3	0	0	0	0.39215	1	9295	9295		42.396	3.1433	1	257950	+		5735	14982	2964	2987	5840	5840					0.05106036723384477
AVIIVGSAK	9	Unmodified	_AVIIVGSAK_					0	0	0		ENST00000464538.1_1_2:27428216-27429031:-|nuORF;ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.27630615234375	2	429.276378	856.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.033	1	27.033	26.533	27.533	0								0	0	0	0.072369	1	8288	8288		79.713	18.741	1				5736	4224	2965	2988	5841	5841					0.1041956328251672
AVIIVGSAK	9	Unmodified	_AVIIVGSAK_					0	0	0		ENST00000464538.1_1_2:27428216-27429031:-|nuORF;ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.2760314941406	2	429.276378	856.538203	-0.91417	-0.00039243	0.62372	0.00026775	-0.29045	-0.00012468	429.2764761070006	27.077	0.14929	27.077	26.99	27.139	0					7	5	2	0	0	0	0.099922	1	8582	8582		79.451	13.648	1	71321			5737	4224	2965	2988	5842	5842					0.1041956328251672
AVIIVGSAK	9	Unmodified	_AVIIVGSAK_					0	0	0		ENST00000464538.1_1_2:27428216-27429031:-|nuORF;ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2763977050781	2	429.276378	856.538203	-0.51759	-0.00022219	0.19673	8.4452E-05	-0.32085	-0.00013773	429.27638540632296	27.283	0.26929	27.283	27.22	27.49	0					11	5	4	0	0	0	0.10915	1	9898	9898		77.318	18.536	1	380640			5738	4224	2965	2988	5843	5843					0.1041956328251672
AVIIVGSAK	9	Unmodified	_AVIIVGSAK_					0	0	0		ENST00000464538.1_1_2:27428216-27429031:-|nuORF;ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.27618408203125	2	429.276378	856.538203	-0.43513	-0.00018679	-0.38858	-0.00016681	-0.82371	-0.0003536	429.27625957496866	27.264	0.27044	27.264	27.154	27.424	0					12	5	3	0	0	0	0.098791	1	9748	9748		79.713	18.741	1	745830			5739	4224	2965	2988	5844	5844					0.1041956328251672
AVIIVGSAK	9	Unmodified	_AVIIVGSAK_					0	0	0		ENST00000464538.1_1_2:27428216-27429031:-|nuORF;ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	ENST00000464538.1_1_2:27428216-27429031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2765197753906	2	429.276378	856.538203	1.025	0.00044003	-1.0075	-0.0004325	0.017541	7.5298E-06	429.27592596186713	27.298	0.27158	27.298	27.187	27.459	0					10	5	3	0	0	0	0.098791	1	9764	9764		79.713	22.992	1	711640			5740	4224	2965	2988	5845	5845					0.1041956328251672
AVILPKVVAP	10	Unmodified	_AVILPKVVAP_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.2273254394531	3	336.226827	1005.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.134	1	30.134	29.634	30.634	0								0	0	0	0.4201	1	9571	9571		8.2351	2.6773	1		+		5741	13129	2966	2989	5846	5846					0.15604971276127344
AVINEDPNAK	10	Unmodified	_AVINEDPNAK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7777709960938	2	535.77747	1069.54039	2.1861	0.0011713	-1.3241	-0.00070941	0.86201	0.00046185	535.7766768088106	22.212	0.18739	22.212	22.119	22.307	0					10	4	3	0	0	0	0.15477	1	7196	7196		85.862	23.754	1	421650			5742	1269	2967	2990	5847	5847					0.008399472296559907
AVINEDPNAK	10	Unmodified	_AVINEDPNAK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7775268554688	2	535.77747	1069.54039	1.2315	0.00065982	-0.91102	-0.0004881	0.32051	0.00017172	535.77696864663	22.128	0.21492	22.128	21.972	22.187	0					10	4	3	0	0	0	0.09653	1	7432	7432		96.034	30.568	1	318350			5743	1269	2967	2990	5848	5848					0.008399472296559907
AVINEDPNAK	10	Unmodified	_AVINEDPNAK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7774658203125	2	535.77747	1069.54039	0.70466	0.00037754	-0.22936	-0.00012289	0.4753	0.00025465	535.7772988633116	22.147	0.21933	22.147	21.988	22.207	0					8	4	2	0	0	0	0.36647	1	7335	7335		59.931	15.4	1	376940			5744	1269	2967	2990	5849	5849					0.008399472296559907
AVIPEKQLVEK	11	Unmodified	_AVIPEKQLVEK_					0	0	0		ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;nc|ENSG00000188994|O60281-2|ZNF292;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant	ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.5868835449219	3	418.586972	1252.73909	-0.86418	-0.00036174	0.41084	0.00017197	-0.45335	-0.00018976	418.587204159083	27.123	0.17123	27.123	27.037	27.209	0					10	4	3	0	0	0	0.67983	1	9449	9449		29.551	4.4248	1	416130			5745	7289	2968	2991	5850	5850					0.12282787808499052
AVIPNCGTPK	10	Carbamidomethyl (C)	_AVIPNC(Carbamidomethyl (C))GTPK_	AVIPNC(1)GTPK		AVIPNC(44)GTPK		0	1	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.779541015625	2	528.778959	1055.54336	0.50291	0.00026593	0.18647	9.8603E-05	0.68938	0.00036453	528.77929163574	24.224	0.30885	24.224	24.087	24.396	0					24	9	4	0	0	0	0.50881	1	7099	7099		44.377	7.2181	1	717010			5746	6086	2969	2992	5851	5851	256				0.017814990828355803
AVIPNCGTPK	10	Carbamidomethyl (C)	_AVIPNC(Carbamidomethyl (C))GTPK_	AVIPNC(1)GTPK		AVIPNC(65)GTPK		0	1	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7791748046875	2	528.778959	1055.54336	1.7434	0.00092187	-1.8704	-0.00098901	-0.12698	-6.7146E-05	528.7781655368648	24.469	0.36684	24.469	24.294	24.661	0					20	7	4	0	0	0	0.31613	1	8550	8550		65.465	21.349	1	5601700			5747	6086	2969	2992	5852	5852	256				0.017814990828355803
AVIQALAQK	9	Unmodified	_AVIQALAQK_					0	0	0		CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant;CAMSAP2|p.M1437*|7|0.32|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant	CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.29193115234375	2	471.292559	940.570566	0.17936	8.4532E-05	-1.6688	-0.00078649	-1.4894	-0.00070195	471.29191477858905	29.151	0.21071	29.151	29.046	29.256	0					11	5	3	0	0	0	0.071197	1	10386	10386		87.754	32.25	1	167690			5748	362	2970	2993	5853	5853					0.09790350685523208
AVIQGQAVRK	10	Unmodified	_AVIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.3278198242188	2	535.327465	1068.64038	0.59824	0.00032025	0.12535	6.7102E-05	0.72359	0.00038736	535.3275054646459	17.916	0.16857	17.916	17.83	17.999	0					10	4	3	0	0	0	0.0098546	1	4355	4355		122.18	57.969	1	3028700			5749	1941	2971	2994	5854	5854					0.10880229354120274
AVIQGQAVRK	10	Unmodified	_AVIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3276977539062	2	535.327465	1068.64038	0.17823	9.5412E-05	0.46917	0.00025116	0.6474	0.00034657	535.3276219965146	18.244	0.49067	18.244	18.025	18.516	0					32	11	5	0	0	0	0.01215	1	5285	5285		113.41	39.157	1	12515000			5750	1941	2971	2994	5855	5855					0.10880229354120274
AVIQGQAVRK	10	Unmodified	_AVIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.2210388183594	3	357.220735	1068.64038	3.602	0.0012867	-3.53	-0.001261	0.072083	2.5749E-05	357.2194202746581	17.933	0.1351	17.933	17.843	17.978	0					5	3	2	0	0	0	0.56931	1	4583	4583		37.812	0	1	203460			5751	1941	2971	2994	5856	5856					0.10880229354120274
AVIQGQAVRK	10	Unmodified	_AVIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.3279418945312	2	535.327465	1068.64038	0.14043	7.5174E-05	0.84898	0.00045448	0.98941	0.00052966	535.3278921629468	17.903	0.17179	17.903	17.855	18.026	0					5	4	2	0	0	0	0.0075039	1	4589	4589		134.81	40.804	1	500300			5752	1941	2971	2994	5857	5857					0.10880229354120274
AVIQGQAVRK	10	Unmodified	_AVIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.2206726074219	3	357.220735	1068.64038	0.30536	0.00010908	-0.50112	-0.00017901	-0.19576	-6.9931E-05	357.22057588567003	18.164	0.17004	18.164	18.105	18.275	0					7	3	3	0	0	0	0.15878	1	5536	5536		85.161	40.784	1	2115800			5753	1941	2971	2994	5858	5858					0.10880229354120274
AVIQGQAVRK	10	Unmodified	_AVIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3276977539062	2	535.327465	1068.64038	0.2913	0.00015594	0.066438	3.5566E-05	0.35774	0.00019151	535.3275221293407	18.181	0.22047	18.181	18.072	18.292	0					10	4	3	0	0	0	0.0098546	1	5545	5545		134.81	46.634	1	5022900			5754	1941	2971	2994	5859	5859					0.10880229354120274
AVIQGQAVRK	10	Unmodified	_AVIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.3274536132812	2	535.327465	1068.64038	3.3668	0.0018023	-3.1586	-0.0016909	0.20819	0.00011145	535.3257485817257	18.15	0.46196	18.15	18.044	18.506	0					16	9	2	0	0	0	0.0098546	1	5385	5385		122.18	23.594	1	18879000			5755	1941	2971	2994	5860	5860					0.10880229354120274
AVIQVGKEK	9	Unmodified	_AVIQVGKEK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2976379394531	2	486.297842	970.581131	0.011425	5.5558E-06	-0.26148	-0.00012716	-0.25005	-0.0001216	486.2976986700229	19.461	0.24331	19.461	19.393	19.636	0					19	7	4	0	0	0	0.016683	1	5027	5027		127.46	39.707	1	4198200			5756	5184	2972	2995	5861	5861					0.09466333339958055
AVIQVGKEK	9	Unmodified	_AVIQVGKEK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2978515625	2	486.297842	970.581131	-0.29401	-0.00014298	-0.004963	-2.4135E-06	-0.29897	-0.00014539	486.2979585660535	19.819	0.59716	19.819	19.693	20.29	0					29	13	5	0	0	0	0.0023831	1	6033	6033		172.25	59.838	1	22921000			5757	5184	2972	2995	5862	5862					0.09466333339958055
AVIQVGKEK	9	Unmodified	_AVIQVGKEK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.5343933105469	3	324.53432	970.581131	0.53413	0.00017334	-0.6461	-0.00020968	-0.11197	-3.6338E-05	324.53413096301034	19.819	0.46352	19.819	19.508	19.971	0					23	10	4	0	0	0	0.22377	1	6034	6034		75.043	15.113	1	5268500			5758	5184	2972	2995	5863	5863					0.09466333339958055
AVIQVGKEK	9	Unmodified	_AVIQVGKEK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2977294921875	2	486.297842	970.581131	-0.8651	-0.0004207	0.547	0.00026601	-0.3181	-0.00015469	486.29809327246755	19.511	0.30378	19.511	19.402	19.706	0					21	9	4	0	0	0	0.0047071	1	5287	5287		159.28	59.901	1	2914000			5759	5184	2972	2995	5864	5864					0.09466333339958055
AVIQVGKEK	9	Unmodified	_AVIQVGKEK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.29791259765625	2	486.297842	970.581131	-0.68716	-0.00033416	0.58382	0.00028391	-0.10334	-5.0255E-05	486.2982793647551	19.701	0.41846	19.701	19.593	20.011	0					15	8	3	0	0	0	0.0012088	1	6281	6281		180.87	63.966	1	24621000			5760	5184	2972	2995	5865	5865					0.09466333339958055
AVIQVSQIVAR	11	Unmodified	_AVIQVSQIVAR_					0	0	0		ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR;ENST00000582074.5_1_17:79994229-79994802:-|nuORF	ENST00000578885.5_1_17:79994327-79995552:-|nuORF	ENST00000578885.5_1_17:79994327-79995552:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.3614501953125	2	592.361505	1182.70846	0.26808	0.0001588	0.51356	0.00030421	0.78165	0.00046302	592.3605133137864	38.2	0.0891	38.2	38.147	38.236	0					5	3	2	0	0	0	0.3077	1	14505	14505		61.765	11.731	1	98113			5761	6182	2973	2996	5866	5866					0.12441054214127689
AVIQVSQIVAR	11	Unmodified	_AVIQVSQIVAR_					0	0	0		ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR;ENST00000582074.5_1_17:79994229-79994802:-|nuORF	ENST00000578885.5_1_17:79994327-79995552:-|nuORF	ENST00000578885.5_1_17:79994327-79995552:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.3617553710938	2	592.361505	1182.70846	1.5225	0.00090184	-1.4364	-0.00085085	0.086086	5.0994E-05	592.3609347410157	38.143	0.12056	38.143	38.108	38.228	0					8	4	2	0	0	0	0.12878	1	14960	14960		82.831	21.066	1	173050			5762	6182	2973	2996	5867	5867					0.12441054214127689
AVIRGVTTK	9	Unmodified	_AVIRGVTTK_					0	0	0		ENSG00000175854|ENST00000418976|SWI5;nc|ENSG00000175854|Q1ZZU3|SWI5	ENSG00000175854|ENST00000418976|SWI5	ENSG00000175854|ENST00000418976|SWI5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.79754638671875	2	472.798009	943.581465	0.59251	0.00028014	-1.3667	-0.00064617	-0.77419	-0.00036604	472.7972925286084	19.568	0.11479	19.568	19.511	19.625	0					6	2	3	0	0	0	0.095583	1	6221	6221		80.455	5.4113	1	613700			5763	6581	2974	2997	5868	5868					0.1074175305980134
AVIRGVTTK	9	Unmodified	_AVIRGVTTK_					0	0	0		ENSG00000175854|ENST00000418976|SWI5;nc|ENSG00000175854|Q1ZZU3|SWI5	ENSG00000175854|ENST00000418976|SWI5	ENSG00000175854|ENST00000418976|SWI5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7982177734375	2	472.798009	943.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.592	1	19.592	19.092	20.092	0								0	0	0	0.10319	1	6084	6084		70.816	5.3508	1				5764	6581	2974	2997	5869	5869					0.1074175305980134
AVIRRHRSK	9	Unmodified	_AVIRRHRSK_					0	0	0			REV__ENST00000581655.1_1_17:80231026-80231098:-|nuORF	REV__ENST00000581655.1_1_17:80231026-80231098:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.90460205078125	3	374.903741	1121.68939	3.2372	0.0012136	-1.1697	-0.00043851	2.0675	0.00077512	374.90324361152494	24.004	0.51679	24.004	23.897	24.414	0					15	10	2	0	0	0	0.5741	1	8231	8231		24.519	6.2571	1	1057100	+		5765	20457	2975	2998	5870	5870					0.13341562433743093
AVITNKDVRK	10	Unmodified	_AVITNKDVRK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.34619140625	2	572.345855	1142.67716	-0.089729	-5.1356E-05	0.67885	0.00038853	0.58912	0.00033718	572.3463033186365	16.57	0.13943	16.57	16.481	16.62	0					8	3	3	0	0	0	0.20322	1	4525	4525		58.246	15.382	1	672110			5766	2284	2976	2999	5871	5871					0.11152481180033647
AVITNKDVRK	10	Unmodified	_AVITNKDVRK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.346435546875	2	572.345855	1142.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.535	1	16.535	16.035	17.035	0								0	0	0	0.38024	1	4743	4743		38.754	6.7987	1				5767	2284	2976	2999	5872	5872					0.11152481180033647
AVITTVAAA	9	Unmodified	_AVITTVAAA_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.74627685546875	2	408.744911	815.475269	3.0225	0.0012354	0.45659	0.00018663	3.4791	0.0014221	408.74495160220005	38.771	0.40357	38.771	38.661	39.064	0					12	8	2	0	0	0	0.5654	1	15303	15303		25.45	2.4077	1	348860	+		5768	16852	2977	3000	5873	5873					0.060149974944692985
AVITVTANR	9	Unmodified	_AVITVTANR_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7799072265625	2	472.779816	943.545079	-2.4816	-0.0011732	2.7403	0.0012956	0.25876	0.00012234	472.78135184822656	25.563	0.19418	25.563	25.414	25.608	0					9	5	3	0	0	0	0.10915	1	8156	8156		77.318	24.381	1	51824			5769	7578	2978	3001	5874	5874					0.07104876163077734
AVIVALSSK	9	Unmodified	_AVIVALSSK_					0	0	0		nc|ENSG00000078140|P61086-2|UBE2K;nc|ENSG00000078140|P61086-3|UBE2K;ENSG00000078140|ENST00000261427|UBE2K	nc|ENSG00000078140|P61086-2|UBE2K	nc|ENSG00000078140|P61086-2|UBE2K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2815246582031	2	444.28166	886.548768	0.58893	0.00026165	-0.72413	-0.00032172	-0.1352	-6.0069E-05	444.28134778942507	30.706	0.31754	30.706	30.61	30.928	0					11	7	3	0	0	0	0.1424	1	11114	11114		69.628	14.851	1	234790			5770	1596	2979	3002	5875	5875					0.10095545936951567
AVIVDKKMQK	10	Unmodified	_AVIVDKKMQK_					0	0	0		nc|ENSG00000205352|Q9NZ81-2|PRR13;ENSG00000205352|ENST00000429243|PRR13	nc|ENSG00000205352|Q9NZ81-2|PRR13	nc|ENSG00000205352|Q9NZ81-2|PRR13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.3472900390625	2	580.347009	1158.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.566	1	17.566	17.066	18.066	0								0	0	0	0.060762	1	4212	4212		88.177	42.225	1				5771	7747	2980	3003	5876	5876					0.10647193593467819
AVIVDKKMQK	10	Unmodified	_AVIVDKKMQK_					0	0	0		nc|ENSG00000205352|Q9NZ81-2|PRR13;ENSG00000205352|ENST00000429243|PRR13	nc|ENSG00000205352|Q9NZ81-2|PRR13	nc|ENSG00000205352|Q9NZ81-2|PRR13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.3469848632812	2	580.347009	1158.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.907	1	17.907	17.407	18.407	0								0	0	0	0.012738	1	5138	5138		109.48	46.172	1				5772	7747	2980	3003	5877	5877					0.10647193593467819
AVIVWSFMK	9	Oxidation (M)	_AVIVWSFM(Oxidation (M))K_		AVIVWSFM(1)K		AVIVWSFM(80)K	0	0	1		ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.796142578125	2	548.79662	1095.57869	0.49843	0.00027354	0.24677	0.00013543	0.7452	0.00040896	548.7964207988573	45.025	0.14021	45.025	44.983	45.123	0					12	8	2	0	0	0	0.098791	1	16809	16809		79.713	33.74	1	37741			5773	10251	2981	3004	5878	5878		408			0.03472161610625335
AVIVWSFMK	9	Unmodified	_AVIVWSFMK_					0	0	0		ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.8001098632812	2	540.799163	1079.58377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.533	1	51.533	51.033	52.033	0								0	0	0	0.21054	1	19134	19134		49.442	26.399	1				5774	10251	2981	3005	5879	5879					0.047164654732569034
AVIVWSFMK	9	Unmodified	_AVIVWSFMK_					0	0	0		ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.80078125	2	540.799163	1079.58377	2.0788	0.0011242	0.067484	3.6495E-05	2.1462	0.0011607	540.7992468643691	51.462	0.22829	51.462	51.377	51.605	0					28	13	3	0	0	0	0.25716	1	20123	20123		54.776	24.935	1	142040			5775	10251	2981	3005	5880	5880					0.047164654732569034
AVIVWSFMK	9	Unmodified	_AVIVWSFMK_					0	0	0		ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	ENST00000514133.1_1_4:52895917-52895998:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.8002319335938	2	540.799163	1079.58377	3.5037	0.0018948	-1.6604	-0.00089792	1.8433	0.00099686	540.7984779112007	51.509	0.29574	51.509	51.371	51.667	0					37	17	3	0	0	0	0.25716	1	20121	20121		54.776	24.459	1	369610			5776	10251	2981	3005	5881	5881					0.047164654732569034
AVKPKAAKPK	10	Unmodified	_AVKPKAAKPK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.3458862304688	2	519.345126	1036.6757	1.389	0.00072135	0.26363	0.00013691	1.6526	0.00085827	519.345165582258	12.387	0.30701	12.387	12.242	12.549	0					19	10	3	0	0	0	0.33468	1	2579	2579		69.628	20.186	1	314820			5777	7222;6080;7010	2982	3006	5882	5882					0.15882891881915384
AVKPKAAKPK	10	Unmodified	_AVKPKAAKPK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.3475341796875	2	519.345126	1036.6757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.133	1	12.133	11.633	12.633	0								0	0	0	0.37293	1	2336	2336		34.173	5.023	1				5778	7222;6080;7010	2982	3006	5883	5883					0.15882891881915384
AVKPKAAKPK	10	Unmodified	_AVKPKAAKPK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.3455810546875	2	519.345126	1036.6757	0.29342	0.00015238	1.8059	0.00093789	2.0993	0.0010903	519.3460918100834	12.379	0.27922	12.379	12.279	12.559	0					17	8	3	0	0	0	0.38179	1	2595	2595		54.776	0	1	204830			5779	7222;6080;7010	2982	3006	5884	5884					0.15882891881915384
AVKPNKDKL	9	Unmodified	_AVKPNKDKL_					0	0	0			REV__tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1	REV__tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.8128356933594	2	506.811116	1011.60768	2.9383	0.0014892	1.2001	0.00060824	4.1384	0.0020974	506.81152229337465	40.935	0.97998	40.935	40.735	41.715	0					34	21	3	0	0	0	0.38666	1	16394	16394		27.882	3.6795	1	123550	+		5780	21968	2983	3007	5885	5885					0.10234022231270501
AVKQLKEVP	9	Unmodified	_AVKQLKEVP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	337.87811279296875	3	337.878087	1010.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.935	1	22.935	22.435	23.435	0								0	0	0	0.27939	1	6822	6822		39.253	4.1008	1		+		5781	14494;21013	2984	3008	5886	5886					0.10754906374040729
AVKRKQFEK	9	Unmodified	_AVKRKQFEK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.5644226074219	3	378.564502	1132.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.877	1	13.877	13.377	14.377	0								0	0	0	0.27939	1	3478	3478		39.253	1.4413	1				5782	3413	2985	3009	5887	5887					0.1106480238822769
AVKRKQFEK	9	Unmodified	_AVKRKQFEK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.564453125	3	378.564502	1132.67168	-0.44609	-0.00016888	0.19234	7.2812E-05	-0.25376	-9.6063E-05	378.56457984702195	13.826	0.11396	13.826	13.766	13.88	0					4	2	2	0	0	0	0.41113	1	3311	3311		40.778	2.9666	1	61858			5783	3413	2985	3009	5888	5888					0.1106480238822769
AVKVIDKTK	9	Unmodified	_AVKVIDKTK_					0	0	0		ENSG00000163788|ENST00000296088|SNRK;SNRK|p.N144Sfs*5|1|0.29|ENSG00000163788|chr3:43303634-43303635|AT/-|frameshift_variant;nc|ENSG00000163788|Q9NRH2-2|SNRK;ENST00000462810.1_1_3:43344695-43373803:+|nuORF	ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.5500183105469	3	334.54997	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.462	1	18.462	17.962	18.962	0								0	0	0	0.3428	1	5671	5671		33.922	0	1				5784	5609	2986	3010	5889	5889					0.12779192891082403
AVLAARRAAP	10	Unmodified	_AVLAARRAAP_					0	0	0			REV__nc|ENSG00000159147|Q9NYP3-2|DONSON	REV__nc|ENSG00000159147|Q9NYP3-2|DONSON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.20623779296875	3	332.541809	994.603597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.622	1	16.622	16.122	17.122	0								0	0	0	0.40063	1	3982	3982		30.318	3.6248	1		+		5785	15703	2987	3011	5890	5890					0.10607977528218271
AVLAISHY	8	Unmodified	_AVLAISHY_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.24639892578125	2	437.245078	872.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.67	1	28.67	28.17	29.17	0								0	0	0	1.7419	1	9265	9265		35.201	3.6709	1				5786	5463	2988	3012	5891	5891					0.034264172143252836
AVLAKAKAK	9	Unmodified	_AVLAKAKAK_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.30474853515625	2	450.30547	898.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.885	1	13.885	13.385	14.385	0								0	0	0	0.040031	1	2849	2849		90.777	29.805	1				5787	5782	2989	3013	5892	5892					0.14303244927793912
AVLAKAKAK	9	Unmodified	_AVLAKAKAK_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.30523681640625	2	450.30547	898.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.123	1	14.123	13.623	14.623	0								0	0	0	0.28164	1	3442	3442		38.806	1.647	1				5788	5782	2989	3013	5893	5893					0.14303244927793912
AVLAPKKA	8	Unmodified	_AVLAPKKA_					0	0	0			REV__ENSG00000114942|ENST00000392222|EEF1B2	REV__ENSG00000114942|ENST00000392222|EEF1B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.26568603515625	2	399.265813	796.517074	0.42057	0.00016792	-0.60768	-0.00024262	-0.18711	-7.4706E-05	399.2654497800055	31.324	0.18142	31.324	31.244	31.426	0					9	4	3	0	0	0	0.72892	1	11812	11812		29.842	8.1392	1	165110	+		5789	13731	2990	3014	5894	5894					0.11067597973658394
AVLCSTMEK	9	Carbamidomethyl (C)	_AVLC(Carbamidomethyl (C))STMEK_	AVLC(1)STMEK		AVLC(64)STMEK		0	1	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7527465820312	2	519.751553	1037.48855	1.443	0.00074999	0.27092	0.00014081	1.7139	0.0008908	519.751224970837	25.075	0.17409	25.075	24.987	25.161	0					6	5	2	0	0	0	0.17854	1	7501	7501		64.207	14.766	1	41064			5790	1368	2991	3015	5895	5895	50				-0.02869255780092317
AVLDEAKNINK	11	Unmodified	_AVLDEAKNINK_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;nc|ENSG00000168280|O60282-2|KIF5C;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	607.8416748046875	2	607.840602	1213.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.761	1	25.761	25.261	26.261	0								0	0	0	0.048805	1	7788	7788		86.882	28.1	1				5791	6256;5148	2992	3016	5896	5896					0.0683645373494528
AVLDEAKNINK	11	Unmodified	_AVLDEAKNINK_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;nc|ENSG00000168280|O60282-2|KIF5C;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.8408203125	2	607.840602	1213.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.019	1	26.019	25.519	26.519	0								0	0	0	1.9015E-07	1	8924	8924		157.34	69.168	1				5792	6256;5148	2992	3016	5897	5897					0.0683645373494528
AVLDEAKNINK	11	Unmodified	_AVLDEAKNINK_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;nc|ENSG00000168280|O60282-2|KIF5C;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	607.8397216796875	2	607.840602	1213.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.777	1	25.777	25.277	26.277	0								0	0	0	0.38672	1	8062	8062		40.058	6.1365	1				5793	6256;5148	2992	3016	5898	5898					0.0683645373494528
AVLDEAKNINK	11	Unmodified	_AVLDEAKNINK_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;nc|ENSG00000168280|O60282-2|KIF5C;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.5626220703125	3	405.562827	1213.66665	0.045272	1.8361E-05	-0.55609	-0.00022553	-0.51082	-0.00020717	405.56259658276065	25.992	0.21591	25.992	25.885	26.101	0					7	4	2	0	0	0	0.65907	1	9261	9261		48.602	26.04	1	824920			5794	6256;5148	2992	3016	5899	5899					0.0683645373494528
AVLDEAKNINK	11	Unmodified	_AVLDEAKNINK_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;nc|ENSG00000168280|O60282-2|KIF5C;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.8410034179688	2	607.840602	1213.66665	0.51667	0.00031405	0.14775	8.9805E-05	0.66442	0.00040386	607.8406680536077	26.009	0.21651	26.009	25.901	26.117	0					9	4	3	0	0	0	0.046463	1	9270	9270		106.88	43.346	1	512530			5795	6256;5148	2992	3016	5900	5900					0.0683645373494528
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.314208984375	2	524.313492	1046.61243	0.71542	0.0003751	-0.12721	-6.6698E-05	0.58821	0.00030841	524.3134095890142	32.016	0.43134	32.016	31.914	32.345	0					47	18	4	0	0	0	0.021961	1	10302	10302		118.74	17.142	1	1728700			5796	7119	2993	3017	5901	5901					0.09098906374038052
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.8780517578125	3	349.878087	1046.61243	0.17162	6.0048E-05	-0.54607	-0.00019106	-0.37445	-0.00013101	349.87794421744485	31.984	0.23739	31.984	31.914	32.151	0					28	9	4	0	0	0	0.5654	1	10303	10303		40.778	17.255	1	2080300			5797	7119	2993	3017	5902	5902					0.09098906374038052
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.3136596679688	2	524.313492	1046.61243	0.092621	4.8562E-05	0.67292	0.00035282	0.76555	0.00040139	524.3137493042374	32.299	0.62137	32.299	32.127	32.748	0					42	15	4	0	0	0	0.021961	1	11811	11811		118.74	28.373	1	10836000			5798	7119	2993	3017	5903	5903					0.09098906374038052
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.3134765625	2	524.313492	1046.61243	0.40801	0.00021393	0.1773	9.2961E-05	0.58531	0.00030689	524.3135999329342	32.061	0.28051	32.061	31.95	32.231	0					25	11	3	0	0	0	0.032052	1	10660	10660		107.01	30.161	1	668540			5799	7119	2993	3017	5904	5904					0.09098906374038052
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.3136596679688	2	524.313492	1046.61243	0.081516	4.274E-05	0.43513	0.00022814	0.51665	0.00027088	524.3136826626363	32.266	0.4459	32.266	32.109	32.555	0					30	10	5	0	0	0	0.020674	1	12233	12233		120.87	27.725	1	2654900			5800	7119	2993	3017	5905	5905					0.09098906374038052
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3136596679688	2	524.313492	1046.61243	3.4311	0.001799	-2.3044	-0.0012082	1.1268	0.00059079	524.3119733996399	32.243	0.722	32.243	31.835	32.557	0					41	14	5	0	0	0	0.012231	1	12123	12123		136.27	29.261	1	9472800			5801	7119	2993	3017	5906	5906					0.09098906374038052
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.3213195800781	2	501.321317	1000.62808	-0.045091	-2.2605E-05	0.38017	0.00019059	0.33508	0.00016798	501.32153525612614	18.207	0.10914	18.207	18.127	18.236	0					7	4	2	0	0	0	0.11898	1	4490	4490		75.043	10.836	1	179500			5802	1255	2994	3018	5907	5907					0.12779192891082403
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.5499572753906	3	334.54997	1000.62808	0.5192	0.0001737	0.52042	0.00017411	1.0396	0.00034781	334.54980488744746	18.509	1.834	18.509	16.969	18.803	0					75	44	4	0	0	0	0.27249	1	5436	5436		68.846	19.31	1	2278600			5803	1255	2994	3018	5908	5908					0.12779192891082403
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.32147216796875	2	501.321317	1000.62808	-0.10883	-5.4557E-05	0.283	0.00014187	0.17417	8.7317E-05	501.3213508293154	18.509	0.35927	18.509	18.282	18.641	0					12	8	3	0	0	0	0.0030642	1	5438	5438		168.26	45.05	1	1151100			5804	1255	2994	3018	5909	5909					0.12779192891082403
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.32135009765625	2	501.321317	1000.62808	-0.96313	-0.00048284	1.2105	0.00060684	0.24736	0.00012401	501.3218123166663	18.206	0.11542	18.206	18.15	18.265	0					10	4	3	0	0	0	0.026538	1	4710	4710		112.41	38.156	1	220360			5805	1255	2994	3018	5910	5910					0.12779192891082403
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.3210754394531	2	501.321317	1000.62808	0.94191	0.0004722	-1.2462	-0.00062477	-0.30433	-0.00015257	501.3205927279995	18.451	0.46972	18.451	18.241	18.711	0					19	9	4	0	0	0	0.0021879	1	5676	5676		173.39	63.272	1	1778100			5806	1255	2994	3018	5911	5911					0.12779192891082403
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3216247558594	2	501.321317	1000.62808	0.14748	7.3935E-05	1.1429	0.00057294	1.2903	0.00064687	501.32178401506746	18.283	0.12043	18.283	18.194	18.314	0					5	3	2	0	0	0	0.070005	1	4743	4743		88.177	30.366	1	92699			5807	1255	2994	3018	5912	5912					0.12779192891082403
AVLDLSWNK	9	Unmodified	_AVLDLSWNK_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2881469726562	2	523.287474	1044.5604	0.088089	4.6096E-05	0.58051	0.00030377	0.6686	0.00034987	523.2875062069852	43.544	0.12675	43.544	43.484	43.61	0					12	7	2	0	0	0	0.28897	1	16404	16404		51.193	10.415	1	88985			5808	4049	2995	3019	5913	5913					0.03989742960266085
AVLDLSWNK	9	Unmodified	_AVLDLSWNK_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2879638671875	2	523.287474	1044.5604	1.7931	0.00093829	-0.18349	-9.6017E-05	1.6096	0.00084227	523.2872491313997	43.52	0.14413	43.52	43.436	43.58	0					12	7	2	0	0	0	0.048471	1	17007	17007		95.815	46.374	1	77567			5809	4049	2995	3019	5914	5914					0.03989742960266085
AVLDLSWNK	9	Unmodified	_AVLDLSWNK_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2880859375	2	523.287474	1044.5604	3.4149	0.001787	-2.5998	-0.0013605	0.8151	0.00042653	523.2862720536452	43.468	0.21285	43.468	43.378	43.591	0					17	7	3	0	0	0	0.010494	1	17376	17376		139.97	68.675	1	255930			5810	4049	2995	3019	5915	5915					0.03989742960266085
AVLDQLKIK	9	Unmodified	_AVLDQLKIK_					0	0	0		nc|ENSG00000140623|Q8IYM1-2|SEPTIN12;ENSG00000140623|ENST00000268231|SEPTIN12	nc|ENSG00000140623|Q8IYM1-2|SEPTIN12	nc|ENSG00000140623|Q8IYM1-2|SEPTIN12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.22149658203125	3	343.221853	1026.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.267	1	24.267	23.767	24.767	0								0	0	0	0.36609	1	8145	8145		20.947	0.95016	1				5811	4401	2996	3020	5916	5916					0.13147479408121399
AVLDYVMTR	9	Unmodified	_AVLDYVMTR_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2818603515625	2	534.281334	1066.54812	1.8336	0.00097964	-1.0297	-0.00055017	0.80383	0.00042947	534.2806662175728	41.189	0.31013	41.189	41.06	41.371	0					12	7	3	0	0	0	0.14578	1	16359	16359		68.846	37.316	1	219960			5812	4355	2997	3021	5917	5917					0.017503832255670204
AVLEADFAK	9	Unmodified	_AVLEADFAK_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2609558105469	2	482.260925	962.507297	-0.10267	-4.9514E-05	-1.6251	-0.00078371	-1.7278	-0.00083323	482.2606462763127	33.927	0.26984	33.927	33.807	34.077	0					17	6	4	0	0	0	0.028876	1	13018	13018		110.12	25.204	1	788360			5813	4128	2998	3022	5918	5918					0.02454365177618456
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.8940734863281	3	415.894354	1244.66123	1.0457	0.00043492	-1.2013	-0.00049961	-0.15555	-6.4691E-05	415.8937948178787	22.234	0.19038	22.234	22.165	22.355	0					12	4	4	0	0	0	0.20372	1	7193	7193		73.841	32.761	1	649040			5814	4038	2999	3023	5919	5919					0.04868730152452372
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	623.3379516601562	2	623.337892	1244.66123	0.56578	0.00035267	-0.78997	-0.00049242	-0.2242	-0.00013975	623.3375561954293	22.246	0.14614	22.246	22.148	22.295	0					8	3	3	0	0	0	0.060509	1	7209	7209		82.831	42.052	1	446720			5815	4038	2999	3023	5920	5920					0.04868730152452372
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	623.3384399414062	2	623.337892	1244.66123	-0.69095	-0.00043069	1.3437	0.00083758	0.65275	0.00040688	623.3382029150872	21.955	0.094534	21.955	21.92	22.015	0					9	3	3	0	0	0	0.038697	1	6396	6396		112.85	54.616	1	90495			5816	4038	2999	3023	5921	5921					0.04868730152452372
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.8940734863281	3	415.894354	1244.66123	0.066015	2.7455E-05	-0.64135	-0.00026673	-0.57533	-0.00023928	415.8941162522932	22.128	0.16591	22.128	22.021	22.187	0					8	3	3	0	0	0	0.39337	1	7453	7453		52.167	17.666	1	735210			5817	4038	2999	3023	5922	5922					0.04868730152452372
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	623.338623046875	2	623.337892	1244.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.051	1	22.051	21.551	22.551	0								0	0	0	0.033538	1	6502	6502		102.95	68.782	1				5818	4038	2999	3023	5923	5923					0.04868730152452372
AVLFEVVL	8	Unmodified	_AVLFEVVL_					0	0	0			REV__ENSG00000244165|ENST00000321826|P2RY11	REV__ENSG00000244165|ENST00000321826|P2RY11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.2745666503906	2	445.273304	888.532055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.972	1	37.972	37.472	38.472	0								0	0	0	1.7419	1	13593	13593		37.028	7.1869	1		+		5819	17707	3000	3024	5924	5924					0.0833304505099477
AVLFTYVGK	9	Unmodified	_AVLFTYVGK_					0	0	0		ENSG00000117480|ENST00000243167|FAAH;ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF	ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.28973388671875	2	499.289485	996.564418	-0.20864	-0.00010417	0.52455	0.0002619	0.31591	0.00015773	499.2899942305204	40.295	0.16709	40.295	40.238	40.405	0					12	7	2	0	0	0	0.22837	1	15363	15363		58.23	17.657	1	134480			5820	3041	3001	3025	5925	5925					0.06599832453991894
AVLFTYVGK	9	Unmodified	_AVLFTYVGK_					0	0	0		ENSG00000117480|ENST00000243167|FAAH;ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF	ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2896423339844	2	499.289485	996.564418	0.85933	0.00042905	-0.63347	-0.00031628	0.22586	0.00011277	499.28906912224585	40.251	0.27859	40.251	40.168	40.447	0					20	11	2	0	0	0	0.1115	1	15863	15863		76.774	21.27	1	266640			5821	3041	3001	3025	5926	5926					0.06599832453991894
AVLFTYVGK	9	Unmodified	_AVLFTYVGK_					0	0	0		ENSG00000117480|ENST00000243167|FAAH;ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF	ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.29022216796875	2	499.289485	996.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.062	1	40.062	39.562	40.562	0								0	0	0	0.1633	1	14247	14247		56.721	8.8055	1				5822	3041	3001	3025	5927	5927					0.06599832453991894
AVLFTYVGK	9	Unmodified	_AVLFTYVGK_					0	0	0		ENSG00000117480|ENST00000243167|FAAH;ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF	ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.28912353515625	2	499.289485	996.564418	1.0594	0.00052894	-1.4888	-0.00074334	-0.4294	-0.00021439	499.2887383464663	40.197	0.41084	40.197	40.092	40.503	0					14	9	2	0	0	0	0.10915	1	15962	15962		77.318	38.511	1	220590			5823	3041	3001	3025	5928	5928					0.06599832453991894
AVLGFFAPLL	10	Unmodified	_AVLGFFAPLL_					0	0	0		ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.8779296875	3	349.879428	1046.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.307	1	32.307	31.807	32.807	0								0	0	0	0.39665	1	10435	10435		31.53	2.3803	1				5824	5438	3002	3026	5929	5929					0.09500995867756501
AVLGRHGPFQ	10	Unmodified	_AVLGRHGPFQ_					0	0	0		ENST00000257209.8_1_18:33877791-33877938:+|nuORF	ENST00000257209.8_1_18:33877791-33877938:+|nuORF	ENST00000257209.8_1_18:33877791-33877938:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.2015380859375	3	361.201564	1080.58286	-0.07009	-2.5317E-05	0.038104	1.3763E-05	-0.031985	-1.1553E-05	361.2015286318538	32.227	0.52077	32.227	32.119	32.64	0					22	10	4	0	0	0	0.73274	1	12286	12286		21.686	21.686	1	525750			5825	8267	3003	3027	5930	5930					0.04579387148555725
AVLHTVLLH	9	Unmodified	_AVLHTVLLH_					0	0	0		ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.8082580566406	2	501.808377	1001.6022	0.69158	0.00034704	-0.7861	-0.00039447	-0.094521	-4.7432E-05	501.80795587397813	31.941	0.21069	31.941	31.86	32.07	0					8	5	2	0	0	0	0.068692	1	11691	11691		88.643	8.7036	1	228530			5826	3317	3004	3028	5931	5931					0.10146343439475913
AVLHTVLLH	9	Unmodified	_AVLHTVLLH_					0	0	0		ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8085021972656	2	501.808377	1001.6022	0.044115	2.2137E-05	0.16211	8.1348E-05	0.20622	0.00010349	501.8084404906956	31.869	0.16677	31.869	31.81	31.976	0					8	3	3	0	0	0	0.015863	1	12072	12072		128.82	36.625	1	175920			5827	3317	3004	3028	5932	5932					0.10146343439475913
AVLHTVLLH	9	Unmodified	_AVLHTVLLH_					0	0	0		ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.80859375	2	501.808377	1001.6022	-0.55388	-0.00027794	0.64871	0.00032553	0.094834	4.7589E-05	501.8088114473337	31.877	0.21546	31.877	31.768	31.984	0					9	4	3	0	0	0	0.14734	1	11975	11975		68.485	10.673	1	286740			5828	3317	3004	3028	5933	5933					0.10146343439475913
AVLHYGLAH	9	Unmodified	_AVLHYGLAH_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7688293457031	2	490.769252	979.52395	-0.50693	-0.00024879	-0.81415	-0.00039956	-1.3211	-0.00064835	490.7690062222665	33.318	0.24636	33.318	33.21	33.456	0					17	6	4	0	0	0	0.21025	1	12308	12308		60.404	14.452	1	200450			5829	6771	3005	3029	5934	5934					0.03336910854227426
AVLHYGLAH	9	Unmodified	_AVLHYGLAH_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7692565917969	2	490.769252	979.52395	0.5918	0.00029044	-0.42137	-0.00020679	0.17044	8.3646E-05	490.7690649715055	33.301	0.31684	33.301	33.176	33.493	0					11	7	2	0	0	0	0.21025	1	12748	12748		60.404	11.193	1	415340			5830	6771	3005	3029	5935	5935					0.03336910854227426
AVLIQAGEY	9	Unmodified	_AVLIQAGEY_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2614440917969	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.713	1	33.713	33.213	34.213	0								0	0	0	0.13522	1	11861	11861		63.306	9.9548	1				5831	3377	3006	3030	5936	5936					0.02454365177618456
AVLISTMIP	9	Unmodified	_AVLISTMIP_					0	0	0			REV__SLC44A4|p.G647V|1|0.11|ENSG00000204385|chr6:31864723-31864723|C/A|missense_variant	REV__SLC44A4|p.G647V|1|0.11|ENSG00000204385|chr6:31864723-31864723|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.77862548828125	2	472.777896	943.54124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.483	1	25.483	24.983	25.983	0								0	0	0	0.23459	1	7669	7669		45.952	1.5748	1		+		5832	21535	3007	3031	5937	5937					0.06721070345008684
AVLKDRVNK	9	Unmodified	_AVLKDRVNK_					0	0	0		CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.T618Lfs*3|1|0.37|ENSG00000169607|chr2:112740978-112740978|T/-|frameshift_variant;ENSG00000169607|ENST00000302450|CKAP2L	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.8221435546875	2	521.822015	1041.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.279	1	16.279	15.779	16.779	0								0	0	0	0.17378	1	3675	3675		30.504	7.4612	1				5833	546	3008	3032	5938	5938					0.11032826979840138
AVLKDRVNK	9	Unmodified	_AVLKDRVNK_					0	0	0		CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.T618Lfs*3|1|0.37|ENSG00000169607|chr2:112740978-112740978|T/-|frameshift_variant;ENSG00000169607|ENST00000302450|CKAP2L	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.8221435546875	2	521.822015	1041.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.549	1	16.549	16.049	17.049	0								0	0	0	0.0016356	1	4507	4507		118.74	41.896	1				5834	546	3008	3032	5939	5939					0.11032826979840138
AVLKGVHSHK	10	Unmodified	_AVLKGVHSHK_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.21710205078125	3	359.217214	1074.62981	0.48389	0.00017382	-0.70689	-0.00025393	-0.223	-8.0106E-05	359.2168095173062	14.772	0.13817	14.772	14.682	14.82	0					5	3	2	0	0	0	0.32758	1	3680	3680		76.17	21.447	1	622780			5835	7544	3009	3033	5940	5940					0.09548246699705487
AVLKGVHSHKK	11	Unmodified	_AVLKGVHSHKK_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.91552734375	3	401.915535	1202.72478	0.94556	0.00038003	-1.74	-0.00069935	-0.79448	-0.00031931	401.9149331062698	13.9	0.17022	13.9	13.859	14.029	0					6	4	2	0	0	0	0.57554	1	3281	3281		38.714	4.7925	1	76644			5836	7544	3010	3034	5941	5941					0.13152180170868633
AVLKGVHSHKK	11	Unmodified	_AVLKGVHSHKK_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.9155578613281	3	401.915535	1202.72478	0.51314	0.00020624	-0.58916	-0.00023679	-0.076027	-3.0556E-05	401.9153046150066	13.855	0.16509	13.855	13.749	13.914	0					6	3	2	0	0	0	0.55968	1	3330	3330		39.873	7.839	1	202700			5837	7544	3010	3034	5942	5942					0.13152180170868633
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.316162109375	2	526.316566	1050.61858	0.6206	0.00032663	0.33385	0.00017571	0.95446	0.00050235	526.3167423252015	17.17	0.19818	17.17	17.099	17.297	0					10	6	3	0	0	0	0.061298	1	4036	4036		85.161	28.727	1	270990			5838	5377	3011	3035	5943	5943					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	351.2134704589844	3	351.213469	1050.61858	0.16501	5.7954E-05	-0.088199	-3.0977E-05	0.076811	2.6977E-05	351.21341889332524	17.17	0.10396	17.17	17.099	17.203	0					5	3	2	0	0	0	0.27249	1	4047	4047		52.937	16.49	1	150390			5839	5377	3011	3035	5944	5944					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.3169555664062	2	526.316566	1050.61858	0.10057	5.2931E-05	0.71265	0.00037508	0.81322	0.00042801	526.3170405862029	17.497	0.16396	17.497	17.415	17.579	0					14	4	4	0	0	0	0.0079272	1	4935	4935		129.42	57.544	1	1970800			5840	5377	3011	3035	5945	5945					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.2133483886719	3	351.213469	1050.61858	0.49534	0.00017397	-0.2726	-9.5739E-05	0.22275	7.8232E-05	351.2133527381868	17.497	0.24207	17.497	17.415	17.658	0					12	6	3	0	0	0	0.076532	1	4936	4936		85.862	5.4072	1	1547700			5841	5377	3011	3035	5946	5946					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.316162109375	2	526.316566	1050.61858	0.48016	0.00025272	-0.56545	-0.0002976	-0.085282	-4.4885E-05	526.3162421218873	17.244	0.11829	17.244	17.16	17.278	0					5	3	2	0	0	0	0.035106	1	4275	4275		87.696	34.345	1	193770			5842	5377	3011	3035	5947	5947					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.317138671875	2	526.316566	1050.61858	0.23362	0.00012296	0.941	0.00049526	1.1746	0.00061822	526.3169730407867	17.429	0.1562	17.429	17.377	17.534	0					7	3	3	0	0	0	0.0015666	1	5182	5182		162.25	52.133	1	1136100			5843	5377	3011	3035	5948	5948					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.3169555664062	2	526.316566	1050.61858	-1.2223	-0.00064334	2.2915	0.001206	1.0691	0.0005627	526.317702575957	17.266	0.15226	17.266	17.183	17.335	0					9	4	3	0	0	0	0.02953	1	4257	4257		82.241	39.844	1	155100			5844	5377	3011	3035	5949	5949					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	351.2135009765625	3	351.213469	1050.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.245	1	17.245	16.745	17.745	0								0	0	0	0.0023244	1	4259	4259		118.74	35.993	1				5845	5377	3011	3035	5950	5950					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.31689453125	2	526.316566	1050.61858	3.46	0.0018211	-2.9384	-0.0015465	0.5216	0.00027453	526.3149433528846	17.404	0.16243	17.404	17.353	17.515	0					8	3	3	0	0	0	0.010427	1	5025	5025		136.27	51.353	1	1575700			5846	5377	3011	3035	5951	5951					0.09529424605557324
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.91168212890625	3	404.911902	1211.71388	-0.11369	-4.6034E-05	-0.3111	-0.00012597	-0.42479	-0.000172	404.91182171426937	22.655	0.32667	22.655	22.524	22.85	0					17	10	2	0	0	0	0.42842	1	6430	6430		49.466	13.019	1	132270			5847	8533	3012	3036	5952	5952					0.11648777796585819
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	606.8634643554688	2	606.864215	1211.71388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.609	1	22.609	22.109	23.109	0								0	0	0	0.4537	1	6418	6418		21.686	3.4237	1				5848	8533	3012	3036	5953	5953					0.11648777796585819
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.9118347167969	3	404.911902	1211.71388	-0.49575	-0.00020073	0.32306	0.00013081	-0.17269	-6.9925E-05	404.9120384040223	22.9	0.7709	22.9	22.756	23.526	0					42	18	4	0	0	0	0.25906	1	7505	7505		67.214	36.645	1	1229800			5849	8533	3012	3036	5954	5954					0.11648777796585819
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.9123229980469	3	404.911902	1211.71388	-1.3691	-0.00055435	1.5321	0.00062035	0.163	6.6001E-05	404.91245232226464	22.669	0.34938	22.669	22.535	22.884	0					21	12	3	0	0	0	0.49446	1	6687	6687		44.639	14.322	1	114140			5850	8533	3012	3036	5955	5955					0.11648777796585819
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.9117431640625	3	404.911902	1211.71388	1.0498	0.00042509	-1.0245	-0.00041484	0.025294	1.0242E-05	404.91142169570355	22.802	1.0674	22.802	22.644	23.711	0					40	21	3	0	0	0	0.33569	1	7781	7781		58.63	23.451	1	1379700			5851	8533	3012	3036	5956	5956					0.11648777796585819
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	606.8642578125	2	606.864215	1211.71388	0.47229	0.00028661	-0.14399	-8.7383E-05	0.3283	0.00019923	606.864021295336	22.81	0.36727	22.81	22.677	23.044	0					15	7	3	0	0	0	0.34891	1	7801	7801		56.434	0	1	218860			5852	8533	3012	3036	5957	5957					0.11648777796585819
AVLLAWEY	8	Unmodified	_AVLLAWEY_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7618103027344	2	482.760561	963.506569	3.4757	0.0016779	-1.567	-0.00075648	1.9087	0.00092145	482.7602379189664	33.713	0.14336	33.713	33.655	33.798	0					7	5	2	0	0	0	0.41446	1	11334	11334		69.093	2.6637	1	64889	+		5853	14421	3013	3037	5958	5958					0.023355705285666772
AVLLAWEY	8	Unmodified	_AVLLAWEY_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.76025390625	2	482.760561	963.506569	-0.60649	-0.00029279	-0.83364	-0.00040245	-1.4401	-0.00069524	482.7601799192278	33.872	0.28716	33.872	33.782	34.069	0					20	6	5	0	0	0	0.39542	2	12906	12906;12929		71.378	71.378	1	732430	+		5854	14421	3013	3037	5959;5960	5959					0.023355705285666772
AVLLFLVVAG	10	Unmodified	_AVLLFLVVAG_					0	0	0			REV__GUCY2C|p.L446F|1|0.46|ENSG00000070019|chr12:14661009-14661009|G/A|missense_variant	REV__GUCY2C|p.L446F|1|0.46|ENSG00000070019|chr12:14661009-14661009|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.8841552734375	3	334.551311	1000.6321	-1.907	-0.00063798	-2.2345	-0.00074755	-4.1414	-0.0013855	334.55043829400626	18.28	0.10988	18.28	18.225	18.335	0					6	3	2	0	0	0	0.6796	1	4738	4738		24.519	0	1	41734	+		5855	20714	3014	3038	5961	5961					0.13181282384800852
AVLLLFANK	9	Unmodified	_AVLLLFANK_					0	0	0		ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF	ENSG00000168374|ENST00000303436|ARF4	ENSG00000168374|ENST00000303436|ARF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.8125305175781	2	494.813128	987.611703	-0.43041	-0.00021297	-0.2405	-0.000119	-0.67091	-0.00033197	494.81294171666065	47.425	0.16565	47.425	47.358	47.523	0					13	10	2	0	0	0	0.12239	1	17399	17399		79.939	29.915	1	55500			5856	6084	3015	3039	5962	5962					0.11740111724986946
AVLLLQVGAG	10	Unmodified	_AVLLLQVGAG_					0	0	0		nc|ENSG00000167702|Q96AC6|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.7943115234375	2	470.794935	939.575317	-1.316	-0.00061958	0.79998	0.00037663	-0.51605	-0.00024295	470.79521149208597	35.431	0.29377	35.431	35.212	35.505	0					23	13	2	0	0	0	0.57532	1	11969	11969		37.159	2.9866	1	81013			5857	11632	3016	3040	5963	5963					0.10311234828293436
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|11|1|anti-sense;nc|ENSG00000153094|O43521-12|BCL2L11	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|11|1|anti-sense	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|11|1|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.80511474609375	2	481.805303	961.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.922	1	32.922	32.422	33.422	0								0	0	0	0.22106	1	12130	12130		47.916	1.9636	1				5858	130	3017	3041	5964	5964					0.11371825207936581
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|11|1|anti-sense;nc|ENSG00000153094|O43521-12|BCL2L11	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|11|1|anti-sense	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|11|1|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.80499267578125	2	481.805303	961.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.93	1	33.93	33.43	34.43	0								0	0	0	0.13522	1	12594	12594		63.306	7.8021	1				5859	130	3017	3041	5965	5965					0.11371825207936581
AVLLQKREK	9	Unmodified	_AVLLQKREK_					0	0	0		nc|ENSG00000168907|Q68DD2-2|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.8450317382812	2	542.84549	1083.67643	-0.17239	-9.3582E-05	0.17597	9.5522E-05	0.0035736	1.9399E-06	542.8454494301786	15.924	0.047298	15.924	15.88	15.928	0					4	2	2	0	0	0	0.41958	1	3719	3719		25.574	0.12388	1	58927			5860	6135	3018	3042	5966	5966					0.1379368653099391
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENSG00000004059|ENST00000000233|ARF5	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.804931640625	2	487.805303	973.596052	-0.010966	-5.3493E-06	-0.3682	-0.00017961	-0.37917	-0.00018496	487.80507554437673	42.917	0.33163	42.917	42.783	43.115	0					41	20	3	0	0	0	0.034359	1	13584	13584		114.59	62.287	1	453220			5861	3910	3019	3043	5967	5967					0.10819825207943268
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENSG00000004059|ENST00000000233|ARF5	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.80474853515625	2	487.805303	973.596052	-0.36469	-0.0001779	-0.032806	-1.6003E-05	-0.39749	-0.0001939	487.8051844997119	43.211	0.41004	43.211	43.062	43.472	0					62	23	4	0	0	0	0.0016726	1	16295	16295		198.32	97.112	1	1730800			5862	3910	3019	3043	5968	5968					0.10819825207943268
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENSG00000004059|ENST00000000233|ARF5	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.804931640625	2	487.805303	973.596052	-1.02	-0.00049757	0.73607	0.00035906	-0.28396	-0.00013852	487.80533704980246	42.949	0.20604	42.949	42.869	43.075	0					20	12	3	0	0	0	0.35021	1	14099	14099		57.811	57.811	1	132510			5863	3910	3019	3043	5969	5969					0.10819825207943268
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENSG00000004059|ENST00000000233|ARF5	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.80584716796875	2	487.805303	973.596052	0.62531	0.00030503	-0.797	-0.00038878	-0.17169	-8.3751E-05	487.80489666811144	43.164	0.38024	43.164	43.061	43.441	0					56	20	4	0	0	0	0.047412	1	16884	16884		105.27	39.466	1	1030300			5864	3910	3019	3043	5970	5970					0.10819825207943268
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENSG00000004059|ENST00000000233|ARF5	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	ENST00000444561.2_1_17:43710417-43713807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.8051452636719	2	487.805303	973.596052	-0.70527	-0.00034403	0.20812	0.00010152	-0.49715	-0.00024251	487.8054214973513	43.141	0.32504	43.141	43.054	43.379	0					43	17	4	0	0	0	0.037569	1	16889	16889		123.99	55.504	1	547740			5865	3910	3019	3043	5971	5971					0.10819825207943268
AVLNNRFIK	9	Unmodified	_AVLNNRFIK_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;RBM26|p.N783Ifs*5|1|0.11|ENSG00000139746|chr13:79342743-79342743|T/-|frameshift_variant;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.824462890625	2	537.824558	1073.63456	3.345	0.001799	-2.738	-0.0014726	0.60703	0.00032647	537.822901306273	28.486	0.21562	28.486	28.375	28.591	0					7	4	2	0	0	0	0.36892	1	10340	10340		45.952	0	1	475310			5866	4351	3020	3044	5972	5972					0.10069130842452978
AVLPFMEL	8	Unmodified	_AVLPFMEL_					0	0	0			REV__ENST00000357508.5_1_1:45190214-45190565:+|nuORF	REV__ENST00000357508.5_1_1:45190214-45190565:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.25103759765625	2	460.251514	918.488476	-0.45173	-0.00020791	-0.0843	-3.8799E-05	-0.53603	-0.00024671	460.2515683727123	31.569	0.45943	31.569	31.174	31.633	0					11	9	2	0	0	0	0.4723	1	11667	11667		62.978	9.627	1	152140	+		5867	18533	3021	3045	5973	5973					0.0259711228221704
AVLPPHLGGAG	11	Unmodified	_AVLPPHLGGAG_					0	0	0		ENST00000334370.8_1_19:42875618-42879777:+|nuORF	ENST00000334370.8_1_19:42875618-42879777:+|nuORF	ENST00000334370.8_1_19:42875618-42879777:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1907043457031	3	330.190665	987.550165	0.52548	0.00017351	-0.51386	-0.00016967	0.011625	3.8385E-06	330.1905000654589	23.034	1.5885	23.034	21.898	23.486	0					76	37	4	0	0	0	0.63398	1	7560	7560		33.922	7.2287	1	410570			5868	8692	3022	3046	5974	5974					0.05589180025708629
AVLPRFGVNL	10	Unmodified	_AVLPRFGVNL_					0	0	0		ENST00000416202.5_1_22:46452749-46452818:+|nuORF	ENST00000416202.5_1_22:46452749-46452818:+|nuORF	ENST00000416202.5_1_22:46452749-46452818:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.5535583496094	3	362.553715	1084.63931	-0.069554	-2.5217E-05	-0.61065	-0.00022139	-0.6802	-0.00024661	362.55368089989776	36.817	0.16472	36.817	36.681	36.846	0					5	3	2	0	0	0	0.6796	1	14340	14340		24.519	0.99649	1	60803			5869	9356	3023	3047	5975	5975					0.10038014985229893
AVLPTPVTK	9	Unmodified	_AVLPTPVTK_					0	0	0		PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant;ENSG00000197724|ENST00000359246|PHF2	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.28900146484375	2	463.289485	924.564418	0.10387	4.8124E-05	-0.92678	-0.00042937	-0.82291	-0.00038124	463.2891818212477	29.243	0.36382	29.243	29.068	29.432	0					27	13	3	0	0	0	0.47038	1	9184	9184		35.618	3.6634	1	177110			5870	7491	3024	3048	5976	5976					0.09911832454008618
AVLPTPVTK	9	Unmodified	_AVLPTPVTK_					0	0	0		PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant;ENSG00000197724|ENST00000359246|PHF2	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2892150878906	2	463.289485	924.564418	-0.47603	-0.00022054	0.21284	9.8604E-05	-0.2632	-0.00012194	463.289573631286	29.507	0.45777	29.507	29.207	29.664	0					20	9	3	0	0	0	0.38666	1	10759	10759		42.864	0.46813	1	1050200			5871	7491	3024	3048	5977	5977					0.09911832454008618
AVLQAHHAK	9	Unmodified	_AVLQAHHAK_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;ENST00000549280.1_1_12:60205892-60206354:+|nuORF	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.77911376953125	2	487.780151	973.545748	-0.0089589	-4.37E-06	-1.7181	-0.00083807	-1.7271	-0.00084244	487.77932298555106	13.981	0.084259	13.981	13.914	13.998	0					7	4	2	0	0	0	0.13519	1	2811	2811		71.296	32.043	1	72616			5872	1840	3025	3049	5978	5978					0.05791715602799741
AVLQAHHAK	9	Unmodified	_AVLQAHHAK_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;ENST00000549280.1_1_12:60205892-60206354:+|nuORF	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7798156738281	2	487.780151	973.545748	-0.35159	-0.0001715	-2.9221	-0.0014253	-3.2737	-0.0015968	487.77889196435666	14.327	0.28551	14.327	14.132	14.417	0					10	7	2	0	0	0	0.099922	1	3472	3472		79.451	10.664	1	682250			5873	1840	3025	3049	5979	5979					0.05791715602799741
AVLQEYRK	8	Unmodified	_AVLQEYRK_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.1941833496094	3	336.194186	1005.56073	0.53513	0.00017991	-0.24105	-8.1039E-05	0.29408	9.8867E-05	336.19395670260946	22.986	2.3477	22.986	20.747	23.095	0					77	47	3	0	0	0	0.74117	1	7820	7820		23.042	0	1	1115800			5874	6529	3026	3050	5980	5980					0.05817162680136789
AVLRHYHA	8	Unmodified	_AVLRHYHA_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant;ENST00000462984.1_1_X:70346235-70347318:+|nuORF	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.84771728515625	3	322.847121	965.519533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.024	1	15.024	14.524	15.524	0								0	0	0	1.7419	1	3289	3289		26.796	4.8362	1				5875	7027	3027	3051	5981	5981					0.03539446431318538
AVLRRLIAE	9	Unmodified	_AVLRRLIAE_					0	0	0			REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.5574035644531	3	347.557348	1039.65021	-0.038876	-1.3512E-05	0.21965	7.634E-05	0.18077	6.2829E-05	347.55734842753265	26.86	0.2126	26.86	26.756	26.968	0					9	4	3	0	0	0	0.54267	1	9554	9554		27.882	2.3082	1	423460	+		5876	14466	3028	3052	5982	5982					0.13197417359515384
AVLRVAGSLQK	11	Unmodified	_AVLRVAGSLQK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000494623.1_1_2:86734536-86737699:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENST00000494623.1_1_2:86734536-86737699:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.3568115234375	2	571.356222	1140.69789	0.032519	1.858E-05	0.68406	0.00039084	0.71658	0.00040942	571.356548933182	26.209	0.20821	26.209	26.101	26.309	0					11	4	4	0	0	0	0.045275	1	9341	9341		107.45	45.348	1	489660			5877	2921;10099	3029	3053	5983	5983					0.13317071559686156
AVLSITAKAK	10	Unmodified	_AVLSITAKAK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5499572753906	3	334.54997	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.47	1	18.47	17.97	18.97	0								0	0	0	0.38322	1	5535	5535		65.465	14.273	1				5878	6444	3030	3054	5984	5984					0.12779192891082403
AVLSWKLAK	9	Unmodified	_AVLSWKLAK_					0	0	0		SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant;ENSG00000188725|ENST00000339020|SMIM15	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.21514892578125	3	339.21481	1014.6226	0.37209	0.00012622	-0.30604	-0.00010381	0.066055	2.2407E-05	339.21472015679774	33.862	0.2525	33.862	33.808	34.061	0					17	10	2	0	0	0	0.55282	1	11040	11040		42.396	42.396	1	216510			5879	7267	3031	3055	5985	5985					0.11587514099278451
AVLSWKLAK	9	Unmodified	_AVLSWKLAK_					0	0	0		SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant;ENSG00000188725|ENST00000339020|SMIM15	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.31829833984375	2	508.318577	1014.6226	-0.097455	-4.9538E-05	0.037507	1.9065E-05	-0.059948	-3.0473E-05	508.31861989654885	33.88	0.25247	33.88	33.802	34.055	0					19	10	2	0	0	0	0.21263	1	11046	11046		60.118	60.118	1	327340			5880	7267	3031	3055	5986	5986					0.11587514099278451
AVLSWKLAK	9	Unmodified	_AVLSWKLAK_					0	0	0		SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant;ENSG00000188725|ENST00000339020|SMIM15	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.31842041015625	2	508.318577	1014.6226	-0.024999	-1.2707E-05	-0.045276	-2.3015E-05	-0.070275	-3.5722E-05	508.31853922555075	34.14	0.62601	34.14	34.026	34.652	0					44	16	4	0	0	0	0.0017279	1	12677	12677		176.09	88.332	1	2780500			5881	7267	3031	3055	5987	5987					0.11587514099278451
AVLSWKLAK	9	Unmodified	_AVLSWKLAK_					0	0	0		SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant;ENSG00000188725|ENST00000339020|SMIM15	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3182373046875	2	508.318577	1014.6226	-0.57326	-0.0002914	0.64902	0.00032991	0.075764	3.8512E-05	508.3189238733094	33.943	0.37037	33.943	33.835	34.206	0					35	15	3	0	0	0	0.13267	1	11409	11409		71.877	27.761	1	592060			5882	7267	3031	3055	5988	5988					0.11587514099278451
AVLSWKLAK	9	Unmodified	_AVLSWKLAK_					0	0	0		SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant;ENSG00000188725|ENST00000339020|SMIM15	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3189392089844	2	508.318577	1014.6226	1.1418	0.0005804	-1.1978	-0.00060885	-0.05596	-2.8446E-05	508.3180341420287	34.138	0.84312	34.138	33.997	34.84	0					56	21	3	0	0	0	0.00324	1	13123	13123		167.23	84.988	1	4844700			5883	7267	3031	3055	5989	5989					0.11587514099278451
AVLSWKLAK	9	Unmodified	_AVLSWKLAK_					0	0	0		SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant;ENSG00000188725|ENST00000339020|SMIM15	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	SMIM15|p.M47T|1|0.4|ENSG00000188725|chr5:61160032-61160032|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.2147216796875	3	339.21481	1014.6226	-0.051627	-1.7513E-05	-0.14221	-4.8241E-05	-0.19384	-6.5753E-05	339.2147145824803	33.929	0.42854	33.929	33.807	34.235	0					27	12	4	0	0	0	0.55282	1	11937	11937		42.396	42.396	1	708510			5884	7267	3031	3055	5990	5990					0.11587514099278451
AVLTHSGFPAK	11	Unmodified	_AVLTHSGFPAK_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.314453125	2	564.314023	1126.61349	0.37088	0.00020929	-0.26685	-0.00015059	0.10403	5.8705E-05	564.3139011792343	24.967	1.3132	24.967	24.602	25.916	0					73	29	3	0	0	0	0.029995	1	8483	8483		114.89	39.851	1	362220			5885	6833	3032	3056	5991	5991					0.055251207429591886
AVLTHSGFPAK	11	Unmodified	_AVLTHSGFPAK_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3138427734375	2	564.314023	1126.61349	0.14406	8.1298E-05	0.090774	5.1225E-05	0.23484	0.00013252	564.3139901216123	25.051	0.76476	25.051	24.628	25.392	0					26	15	3	0	0	0	0.40021	1	8825	8825		51.528	18.715	1	99603			5886	6833	3032	3056	5992	5992					0.055251207429591886
AVLTHSGFPAK	11	Unmodified	_AVLTHSGFPAK_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.8148803710938	2	564.314023	1126.61349	-1.063	-0.00059989	1.1767	0.00066402	0.11363	6.4123E-05	564.3145687135042	24.726	0.6761	24.726	24.495	25.171	0					22	15	2	0	0	0	0.38515	1	7828	7828		53.089	8.7118	1	97645			5887	6833	3032	3056	5993	5993					0.055251207429591886
AVLTQLLSM	9	Unmodified	_AVLTQLLSM_					0	0	0		ENST00000542340.1_1_12:1909550-1920875:-|nuORF;ENST00000280663.12_1_12:1909550-1953688:-|nuORF;nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-6|CACNA2D4;ENSG00000151062|ENST00000382722|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-5|CACNA2D4	ENST00000542340.1_1_12:1909550-1920875:-|nuORF	ENST00000542340.1_1_12:1909550-1920875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7764892578125	2	488.280803	974.547053	-0.079119	-3.8633E-05	-4.3112	-0.0021051	-4.3903	-0.0021437	488.2806833745669	36.168	0.34419	36.168	36.022	36.367	0					23	17	2	0	0	0	0.32741	1	11824	11824		47.916	5.5195	1	98971			5888	4944	3033	3057	5994	5994					0.058761688566846715
AVLVETIKK	9	Unmodified	_AVLVETIKK_					0	0	0		CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2;nc|ENSG00000163539|O75122|CLASP2	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.8236389160156	2	500.823692	999.632832	-0.13285	-6.6534E-05	-0.03731	-1.8686E-05	-0.17016	-8.522E-05	500.82354246868806	24.611	0.17856	24.611	24.519	24.698	0					10	4	3	0	0	0	0.30951	1	8315	8315		49.442	20.292	1	391360			5889	548	3034	3058	5995	5995					0.13300077033864
AVLYQPLFDK	10	Unmodified	_AVLYQPLFDK_					0	0	0		ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.3324584960938	2	597.331882	1192.64921	0.056763	3.3906E-05	0.55683	0.00033261	0.6136	0.00036652	597.3321480958479	43.796	0.18133	43.796	43.708	43.889	0					14	9	2	0	0	0	0.28675	1	16482	16482		68.846	22.874	1	90807			5890	7182	3035	3059	5996	5996					0.060591581999460686
AVLYQPLFDK	10	Unmodified	_AVLYQPLFDK_					0	0	0		ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.3330078125	2	597.331882	1192.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.786	1	43.786	43.286	44.286	0								0	0	0	0.40063	1	17100	17100		30.318	4.7437	1				5891	7182	3035	3059	5997	5997					0.060591581999460686
AVMAAKMAKLG	11	Unmodified	_AVMAAKMAKLG_					0	0	0			REV__ENST00000482054.1_1_9:90343611-90343650:+|nuORF	REV__ENST00000482054.1_1_9:90343611-90343650:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.2084045410156	3	364.208562	1089.60386	-0.10253	-3.7341E-05	-0.38984	-0.00014198	-0.49237	-0.00017933	364.20846992745146	15.473	0.10583	15.473	15.44	15.546	0					5	3	2	0	0	0	0.7767	1	3489	3489		20.03	1.7684	1	144840	+		5892	19607	3036	3060	5998	5998					0.0626389314154494
AVMDGNVITAK	11	Unmodified	_AVMDGNVITAK_					0	0	0		ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.7987060546875	2	559.797349	1117.58014	1.4314	0.0008013	1.0954	0.00061318	2.5268	0.0014145	559.7978945597603	30.096	0.23911	30.096	29.999	30.238	0					15	8	3	0	0	0	0.22967	2	9538	9538;9570		70.399	13.333	1	156960			5893	2229	3037	3061	5999;6000	5999					0.026057509087195285
AVMDGNVITAK	11	Unmodified	_AVMDGNVITAK_					0	0	0		ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.79833984375	2	559.797349	1117.58014	1.7963	0.0010056	-0.27982	-0.00015664	1.5165	0.00084892	559.797543844463	30.335	0.3794	30.335	30.245	30.624	0					27	9	5	0	0	0	0.080197	1	10933	10933		95.483	27.989	1	1371800			5894	2229	3037	3061	6001	6001					0.026057509087195285
AVMDGNVITAK	11	Unmodified	_AVMDGNVITAK_					0	0	0		ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.7980346679688	2	559.797349	1117.58014	0.12374	6.9269E-05	1.3512	0.00075641	1.475	0.00082568	559.7979862119957	30.115	0.37854	30.115	30.014	30.393	0					18	13	2	0	0	0	0.21297	1	9854	9854		72.096	11.802	1	207360			5895	2229	3037	3061	6002	6002					0.026057509087195285
AVMDGNVITAK	11	Unmodified	_AVMDGNVITAK_					0	0	0		ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.7979125976562	2	559.797349	1117.58014	1.7878	0.0010008	-0.41084	-0.00022999	1.3769	0.00077081	559.7972402857133	30.316	0.46493	30.316	30.136	30.601	0					24	10	4	0	0	0	0.094298	1	11329	11329		91.469	27.935	1	1390300			5896	2229	3037	3061	6003	6003					0.026057509087195285
AVMDGNVITAK	11	Unmodified	_AVMDGNVITAK_					0	0	0		ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.797607421875	2	559.797349	1117.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.122	1	30.122	29.622	30.622	0								0	0	0	0.27755	1	10219	10219		53.597	9.4801	1				5897	2229	3037	3061	6004	6004					0.026057509087195285
AVMDGNVITAK	11	Unmodified	_AVMDGNVITAK_					0	0	0		ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7979125976562	2	559.797349	1117.58014	1.8256	0.001022	-0.79038	-0.00044245	1.0352	0.00057952	559.7971543272369	30.295	0.44653	30.295	30.131	30.578	0					20	9	3	0	0	0	0.23702	1	11204	11204		68.786	10.556	1	1503800			5898	2229	3037	3061	6005	6005					0.026057509087195285
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	410.88885498046875	3	410.888546	1229.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.066	1	21.066	20.566	21.566	0								0	0	0	0.36259	1	5743	5743		43.419	8.2403	1				5899	6541	3038	3062	6006	6006					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	615.8294677734375	2	615.82918	1229.64381	1.6017	0.00098638	-1.6171	-0.00099584	-0.015349	-9.4522E-06	615.8286147560443	21.065	0.11868	21.065	20.99	21.108	0					8	3	3	0	0	0	0.03035	1	5737	5737		107.45	66.028	1	122070			5900	6541	3038	3062	6007	6007					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	410.8883972167969	3	410.888546	1229.64381	0.60114	0.000247	-0.53191	-0.00021856	0.069229	2.8445E-05	410.8883057739106	21.371	0.18044	21.371	21.281	21.461	0					9	4	3	0	0	0	0.24586	1	6772	6772		68.786	18.752	1	255740			5901	6541	3038	3062	6008	6008					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	615.8291625976562	2	615.82918	1229.64381	-0.089971	-5.5407E-05	-0.075936	-4.6764E-05	-0.16591	-0.00010217	615.8293723082496	21.353	0.18077	21.353	21.264	21.444	0					13	4	4	0	0	0	1.687E-05	1	6784	6784		169.99	98.116	1	1456400			5902	6541	3038	3062	6009	6009					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	615.8299560546875	2	615.82918	1229.64381	-0.65435	-0.00040297	0.74571	0.00045923	0.091357	5.626E-05	615.829888032771	21.068	0.13082	21.068	21	21.131	0					9	4	3	0	0	0	5.7091E-05	1	5996	5996		153.1	78.059	1	251820			5903	6541	3038	3062	6010	6010					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.88848876953125	3	410.888546	1229.64381	0.056114	2.3056E-05	-0.22336	-9.1775E-05	-0.16724	-6.8719E-05	410.88855977783476	21.282	0.16479	21.282	21.176	21.341	0					11	3	4	0	0	0	0.29048	1	7022	7022		63.694	22.916	1	605360			5904	6541	3038	3062	6011	6011					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	615.8290405273438	2	615.82918	1229.64381	1.04	0.00064045	-1.3756	-0.00084714	-0.33563	-0.00020669	615.8284911511714	21.265	0.21369	21.265	21.16	21.374	0					10	4	3	0	0	0	6.6148E-07	1	7036	7036		176.6	96.886	1	2116900			5905	6541	3038	3062	6012	6012					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	615.8291015625	2	615.82918	1229.64381	0.38947	0.00023985	-0.953	-0.00058688	-0.56353	-0.00034704	615.8288860358658	21.129	0.15047	21.129	21.064	21.215	0					7	3	3	0	0	0	7.4547E-05	1	6071	6071		141.91	66.867	1	131560			5906	6541	3038	3062	6013	6013					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.8885498046875	3	410.888546	1229.64381	-0.4717	-0.00019382	0.091003	3.7392E-05	-0.3807	-0.00015642	410.8887159123742	21.246	0.16433	21.246	21.19	21.355	0					9	3	4	0	0	0	0.36165	1	6900	6900		55.721	15.848	1	780520			5907	6541	3038	3062	6014	6014					0.03817111345824742
AVMDNKNPTIK	11	Unmodified	_AVMDNKNPTIK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	615.8292846679688	2	615.82918	1229.64381	1.0572	0.00065104	-1.0795	-0.0006648	-0.022343	-1.3759E-05	615.8285385876624	21.28	0.16448	21.28	21.174	21.338	0					11	3	4	0	0	0	0.00071535	1	6916	6916		131.09	65.622	1	1467900			5908	6541	3038	3062	6015	6015					0.03817111345824742
AVMDSDTTGK	10	Unmodified	_AVMDSDTTGK_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.734375	2	512.734414	1023.45428	0.5385	0.00027611	-0.46382	-0.00023782	0.074672	3.8287E-05	512.7344031434069	18.571	0.26869	18.571	18.459	18.728	0					9	5	3	0	0	0	0.39827	1	5732	5732		56.434	1.6691	1	197020			5909	3468	3039	3063	6016	6016					-0.056513806673592626
AVMDSDTTGK	10	Unmodified	_AVMDSDTTGK_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.734619140625	2	512.734414	1023.45428	0.069813	3.5795E-05	0.60561	0.00031052	0.67543	0.00034631	512.734920010566	18.581	0.39177	18.581	18.471	18.863	0					11	8	3	0	0	0	0.46128	1	5600	5600		49.536	1.6204	1	407830			5910	3468	3039	3063	6017	6017					-0.056513806673592626
AVMDVVKKQK	10	Unmodified	_AVMDVVKKQK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.3392944335938	2	573.339184	1144.66381	1.0644	0.00061026	-1.2007	-0.0006884	-0.13629	-7.8139E-05	573.3385656854082	20.108	0.14526	20.108	20.023	20.168	0					12	4	4	0	0	0	0.026103	1	5327	5327		120.87	32.226	1	337880			5911	1870	3040	3064	6018	6018					0.0972690707642414
AVMDVVKKQK	10	Unmodified	_AVMDVVKKQK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.3396606445312	2	573.339184	1144.66381	-0.12265	-7.0319E-05	0.51791	0.00029694	0.39527	0.00022662	573.3396248731084	20.469	0.28824	20.469	20.322	20.61	0					19	6	5	0	0	0	0.0075039	1	6344	6344		155.58	66.942	1	2195300			5912	1870	3040	3064	6019	6019					0.0972690707642414
AVMDVVKKQK	10	Unmodified	_AVMDVVKKQK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.338623046875	2	573.339184	1144.66381	-0.20084	-0.00011515	0.69581	0.00039893	0.49496	0.00028378	573.3396260534871	20.148	0.16878	20.148	20.074	20.243	0					8	5	2	0	0	0	0.17315	1	5570	5570		82.75	23.969	1	341960			5913	1870	3040	3064	6020	6020					0.0972690707642414
AVMDVVKKQK	10	Unmodified	_AVMDVVKKQK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.3394165039062	2	573.339184	1144.66381	-0.11098	-6.3627E-05	0.27751	0.00015911	0.16653	9.5481E-05	573.3395195525527	20.357	0.21541	20.357	20.246	20.462	0					13	4	4	0	0	0	0.0084313	1	6593	6593		150.36	40.883	1	3164400			5914	1870	3040	3064	6021	6021					0.0972690707642414
AVMEKQKKK	9	Unmodified	_AVMEKQKKK_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENST00000587715.1_1_19:55598611-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3263549804688	2	545.326076	1088.6376	0.40119	0.00021878	-0.17164	-9.3602E-05	0.22955	0.00012518	545.326462527434	11.113	0.084671	11.113	11.09	11.175	0					7	4	3	0	0	0	0.037712	1	2121	2121		85.161	8.3867	1	181720			5915	3692;11522	3041	3065	6022	6022					0.09682637904961666
AVMEKQKKK	9	Unmodified	_AVMEKQKKK_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENST00000587715.1_1_19:55598611-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3275146484375	2	545.326076	1088.6376	3.7293	0.0020337	-1.4991	-0.0008175	2.2302	0.0012162	545.3254573758882	11.15	0.077518	11.15	11.111	11.188	0					9	4	3	0	0	0	0.12278	1	2135	2135		58.23	0	1	159570			5916	3692;11522	3041	3065	6023	6023					0.09682637904961666
AVMEMMSQK	9	Unmodified	_AVMEMMSQK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.740966796875	2	527.740131	1053.46571	0.25819	0.00013626	-0.1126	-5.9424E-05	0.14559	7.6834E-05	527.7406642933801	29.78	0.28705	29.78	29.675	29.962	0					32	11	4	0	0	0	0.063171	1	9718	9718		90.601	31.819	1	830160			5917	3312	3042	3066	6024	6024					-0.05888598169212855
AVMEMMSQK	9	Unmodified	_AVMEMMSQK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7409057617188	2	527.740131	1053.46571	1.7523	0.00092477	-1.605	-0.00084703	0.14732	7.7748E-05	527.7397909881051	30	0.4661	30	29.851	30.317	0					24	10	4	0	0	0	0.012231	1	11178	11178		136.27	51.353	1	5262000			5918	3312	3042	3066	6025	6025					-0.05888598169212855
AVMEMMSQK	9	Unmodified	_AVMEMMSQK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7418212890625	2	527.740131	1053.46571	1.2464	0.00065779	-1.0956	-0.00057819	0.15084	7.9606E-05	527.7400356574908	29.806	0.29219	29.806	29.694	29.986	0					21	8	4	0	0	0	0.01873	1	10049	10049		124.08	59.873	1	541820			5919	3312	3042	3066	6026	6026					-0.05888598169212855
AVMEMMSQK	9	Unmodified	_AVMEMMSQK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7407836914062	2	527.740131	1053.46571	-1.1903	-0.00062818	1.6759	0.00088442	0.48555	0.00025624	527.7412163545063	29.799	0.24772	29.799	29.681	29.929	0					19	7	4	0	0	0	0.023928	1	10074	10074		115.49	38.72	1	422790			5920	3312	3042	3066	6027	6027					-0.05888598169212855
AVMEMMSQK	9	Unmodified	_AVMEMMSQK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.740478515625	2	527.740131	1053.46571	1.6291	0.00085976	-1.4288	-0.00075406	0.20029	0.0001057	527.7397141997332	29.939	0.66485	29.939	29.532	30.197	0					27	13	4	0	0	0	0.022525	1	11036	11036		117.81	59.029	1	3936100			5921	3312	3042	3066	6028	6028					-0.05888598169212855
AVMEMMSQK	9	Unmodified	_AVMEMMSQK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.740478515625	2	527.740131	1053.46571	3.473	0.0018329	-3.423	-0.0018065	0.050021	2.6398E-05	527.7387364152424	29.95	0.41626	29.95	29.813	30.23	0					20	8	4	0	0	0	0.063171	1	11051	11051		90.601	35.097	1	2679000			5922	3312	3042	3066	6029	6029					-0.05888598169212855
AVMETLLQR	9	Unmodified	_AVMETLLQR_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7938232421875	2	530.794609	1059.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.299	1	38.299	37.799	38.799	0								0	0	0	0.029433	1	14546	14546		101.6	35.798	1				5923	2954	3043	3067	6030	6030					0.047260721169323006
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(46)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.3126831054688	2	540.809728	1079.6049	1.6702	0.00090326	1.0257	0.00055473	2.6959	0.001458	540.810386700615	36.936	0.15162	36.936	36.851	37.003	0					12	7	2	0	0	0	0.4943	1	12103	12103		45.952	7.1458	1	80811			5924	5915	3044	3068	6031	6031		239			0.06828430782093164
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(71)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.810546875	2	540.809728	1079.6049	1.9076	0.0010317	-1.4147	-0.00076507	0.49296	0.0002666	540.8091563897182	37.219	0.25993	37.219	37.142	37.402	0					19	7	4	0	0	0	0.26673	1	14089	14089		71.296	25.323	1	388680			5925	5915	3044	3068	6032	6032		239			0.06828430782093164
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(94)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.8101196289062	2	540.809728	1079.6049	1.3808	0.00074674	-0.44842	-0.00024251	0.93235	0.00050423	540.8094238310644	37.185	0.30804	37.185	37.095	37.403	0					19	9	3	0	0	0	0.10814	1	14514	14514		94.006	30.7	1	341590			5926	5915	3044	3068	6033	6033		239			0.06828430782093164
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(71)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.31298828125	2	540.809728	1079.6049	2.1368	0.0011556	0.13083	7.0755E-05	2.2677	0.0012264	540.8097295810802	36.987	0.16482	36.987	36.902	37.067	0					9	6	2	0	0	0	0.26673	1	13240	13240		71.296	10.324	1	44583			5927	5915	3044	3068	6034	6034		239			0.06828430782093164
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(110)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.8106079101562	2	540.809728	1079.6049	0.65537	0.00035443	-0.017488	-9.4574E-06	0.63788	0.00034497	540.8098672219168	37.129	0.41003	37.129	37.023	37.434	0					22	8	4	0	0	0	0.058645	1	14474	14474		106.42	53.064	1	634880			5928	5915	3044	3068	6035	6035		239			0.06828430782093164
AVMGAYVLLK	10	Unmodified	_AVMGAYVLLK_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8132934570312	2	532.81227	1063.60999	0.40306	0.00021476	0.74851	0.00039881	1.1516	0.00061357	532.8125657975751	43.158	0.15509	43.158	43.093	43.248	0					13	9	2	0	0	0	0.61887	2	13641	13641;13651		31.955	7.1897	1	46231			5929	5915	3044	3069	6036;6037	6036					0.08072734644724733
AVMGAYVLLK	10	Unmodified	_AVMGAYVLLK_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.812744140625	2	532.81227	1063.60999	0.13141	7.0017E-05	0.29687	0.00015818	0.42828	0.00022819	532.8126412812126	43.423	0.29866	43.423	43.347	43.646	0					41	17	4	0	0	0	0.027956	1	16371	16371		119.56	40.106	1	386120			5930	5915	3044	3069	6038	6038					0.08072734644724733
AVMGAYVLLK	10	Unmodified	_AVMGAYVLLK_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.3154296875	2	532.81227	1063.60999	-0.34772	-0.00018527	2.4786	0.0013206	2.1309	0.0011354	532.8135092867843	43.242	0.14653	43.242	43.137	43.284	0					17	9	2	0	0	0	0.26673	1	14162	14162		71.296	12.514	1	77624			5931	5915	3044	3069	6039	6039					0.08072734644724733
AVMGAYVLLK	10	Unmodified	_AVMGAYVLLK_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.813232421875	2	532.81227	1063.60999	1.7239	0.00091852	-0.74993	-0.00039957	0.97398	0.00051895	532.8120640131721	43.383	0.35993	43.383	43.297	43.657	0					52	19	4	0	0	0	0.10814	1	16959	16959		94.006	42.671	1	737840			5932	5915	3044	3069	6040	6040					0.08072734644724733
AVMGAYVLLK	10	Unmodified	_AVMGAYVLLK_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8134765625	2	532.81227	1063.60999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.182	1	43.182	42.682	43.682	0								0	0	0	0.28441	1	14997	14997		53.351	16.192	1				5933	5915	3044	3069	6041	6041					0.08072734644724733
AVMGAYVLLK	10	Unmodified	_AVMGAYVLLK_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8135375976562	2	532.81227	1063.60999	1.7671	0.00094154	-1.32	-0.0007033	0.44714	0.00023824	532.8117992506142	43.342	0.39829	43.342	43.238	43.636	0					41	14	4	0	0	0	0.12663	1	17315	17315		90.777	36	1	888350			5934	5915	3044	3069	6042	6042					0.08072734644724733
AVMGNPKVK	9	Unmodified	_AVMGNPKVK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;HBD|p.A63V|1|0.34|ENSG00000223609|chr11:5234118-5234118|G/A|missense_variant	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2730712890625	2	472.273312	942.532072	-0.36306	-0.00017147	-0.17756	-8.3857E-05	-0.54062	-0.00025532	472.2732702316816	17.796	0.195	17.796	17.685	17.88	0					15	5	4	0	0	0	0.015835	1	4304	4304		128.86	60.376	1	1616400			5935	7970	3045	3070	6043	6043					0.05850721779347623
AVMGNPKVK	9	Unmodified	_AVMGNPKVK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;HBD|p.A63V|1|0.34|ENSG00000223609|chr11:5234118-5234118|G/A|missense_variant	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2731018066406	2	472.273312	942.532072	-0.58092	-0.00027436	-0.1197	-5.653E-05	-0.70062	-0.00033089	472.2733506509481	18.123	0.45906	18.123	17.926	18.385	0					25	10	4	0	0	0	0.036372	1	5229	5229		102.77	44.962	1	8949200			5936	7970	3045	3070	6044	6044					0.05850721779347623
AVMGNPKVK	9	Unmodified	_AVMGNPKVK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;HBD|p.A63V|1|0.34|ENSG00000223609|chr11:5234118-5234118|G/A|missense_variant	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2734069824219	2	472.273312	942.532072	-0.73745	-0.00034828	0.05885	2.7793E-05	-0.6786	-0.00032048	472.27344856250147	17.823	0.19492	17.823	17.715	17.909	0					14	5	4	0	0	0	0.18605	1	4519	4519		63.306	18.775	1	1007900			5937	7970	3045	3070	6045	6045					0.05850721779347623
AVMGNPKVK	9	Unmodified	_AVMGNPKVK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;HBD|p.A63V|1|0.34|ENSG00000223609|chr11:5234118-5234118|G/A|missense_variant	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.273193359375	2	472.273312	942.532072	-0.72871	-0.00034415	0.31481	0.00014868	-0.4139	-0.00019548	472.27362786970815	18.08	0.37084	18.08	17.922	18.292	0					17	7	4	0	0	0	0.018419	1	5473	5473		124.59	64.3	1	5389700			5938	7970	3045	3070	6046	6046					0.05850721779347623
AVMGNPKVK	9	Unmodified	_AVMGNPKVK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;HBD|p.A63V|1|0.34|ENSG00000223609|chr11:5234118-5234118|G/A|missense_variant	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2729187011719	2	472.273312	942.532072	-2.4459	-0.0011552	1.7977	0.00084903	-0.6482	-0.00030613	472.274033127255	17.865	0.18693	17.865	17.768	17.955	0					13	4	4	0	0	0	0.18605	1	4571	4571		63.306	20.832	1	489010			5939	7970	3045	3070	6047	6047					0.05850721779347623
AVMGNPKVK	9	Oxidation (M)	_AVM(Oxidation (M))GNPKVK_		AVM(1)GNPKVK		AVM(53)GNPKVK	0	0	1		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;HBD|p.A63V|1|0.34|ENSG00000223609|chr11:5234118-5234118|G/A|missense_variant	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2703857421875	2	480.27077	958.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.167	1	14.167	13.667	14.667	0								0	0	0	0.1836	1	2878	2878		53.351	14.33	1				5940	7970	3045	3071	6048	6048		325			0.04606417916738792
AVMGNPKVK	9	Oxidation (M)	_AVM(Oxidation (M))GNPKVK_		AVM(1)GNPKVK		AVM(82)GNPKVK	0	0	1		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;HBD|p.A63V|1|0.34|ENSG00000223609|chr11:5234118-5234118|G/A|missense_variant	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.27056884765625	2	480.27077	958.526987	-0.18353	-8.8146E-05	-0.37773	-0.00018141	-0.56126	-0.00026956	480.2704662048941	14.492	0.32739	14.492	14.406	14.734	0					14	8	3	0	0	0	0.087582	1	3545	3545		82.305	27.529	1	912180			5941	7970	3045	3071	6049	6049		325			0.04606417916738792
AVMGNPVTR	9	Unmodified	_AVMGNPVTR_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.75244140625	2	472.752744	943.490935	0.23116	0.00010928	-0.45415	-0.0002147	-0.22298	-0.00010542	472.7527473887777	24.866	0.54155	24.866	24.533	25.074	0					40	13	4	0	0	0	0.21263	1	8417	8417		60.118	7.1816	1	2487400			5942	4047	3046	3072	6050	6050					0.016929607398878943
AVMGNPVTR	9	Unmodified	_AVMGNPVTR_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7525634765625	2	472.752744	943.490935	-1.5045	-0.00071126	0.71797	0.00033942	-0.78653	-0.00037184	472.7533261297923	24.604	0.3764	24.604	24.435	24.811	0					35	13	4	0	0	0	0.16002	1	7526	7526		66.429	18.772	1	453810			5943	4047	3046	3072	6051	6051					0.016929607398878943
AVMGNPVTR	9	Unmodified	_AVMGNPVTR_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7524719238281	2	472.752744	943.490935	0.59236	0.00028004	-0.9434	-0.00044599	-0.35104	-0.00016596	472.7524673458974	24.823	0.76257	24.823	24.494	25.256	0					36	15	3	0	0	0	0.087861	1	8712	8712		82.241	23.459	1	3192100			5944	4047	3046	3072	6052	6052					0.016929607398878943
AVMGNPVTR	9	Unmodified	_AVMGNPVTR_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7525634765625	2	472.752744	943.490935	-0.52177	-0.00024667	-0.19466	-9.2028E-05	-0.71643	-0.0003387	472.7528220267579	24.669	0.36046	24.669	24.467	24.827	0					23	8	4	0	0	0	0.24095	1	7706	7706		56.721	14.247	1	364720			5945	4047	3046	3072	6053	6053					0.016929607398878943
AVMGNPVTR	9	Unmodified	_AVMGNPVTR_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7525634765625	2	472.752744	943.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.738	1	24.738	24.238	25.238	0								0	0	0	0.072369	1	8571	8571		79.713	20.931	1				5946	4047	3046	3072	6054	6054					0.016929607398878943
AVMGNPVTR	9	Unmodified	_AVMGNPVTR_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7526550292969	2	472.752744	943.490935	2.4238	0.0011459	-2.494	-0.001179	-0.070128	-3.3153E-05	472.751864545005	24.777	0.75061	24.777	24.496	25.247	0					47	15	4	0	0	0	0.19605	1	8565	8565		62.107	16.135	1	2254100			5947	4047	3046	3072	6055	6055					0.016929607398878943
AVMISAIEK	9	Unmodified	_AVMISAIEK_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2730712890625	2	481.272978	960.531403	-0.29328	-0.00014115	-0.57472	-0.0002766	-0.868	-0.00041775	481.27266945889534	32.662	0.10758	32.662	32.63	32.738	0					5	3	2	0	0	0	0.35021	1	11391	11391		45.972	0.020292	1	63945			5948	7301	3047	3073	6056	6056					0.04955882339629625
AVMKDVVLIRK	11	Unmodified	_AVMKDVVLIRK_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.6005554199219	3	424.600447	1270.77951	-0.3188	-0.00013536	-0.049592	-2.1057E-05	-0.36839	-0.00015642	424.6003923099009	27.626	0.25836	27.626	27.523	27.781	0					8	5	2	0	0	0	0.13158	1	10042	10042		82.494	47.316	1	88237			5949	1424	3048	3074	6057	6057					0.15495430927262532
AVMKDVVLIRK	11	Unmodified	_AVMKDVVLIRK_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.60015869140625	3	424.600447	1270.77951	-0.36972	-0.00015699	-0.17124	-7.2707E-05	-0.54096	-0.00022969	424.6004233999163	27.62	0.32155	27.62	27.459	27.78	0					13	6	3	0	0	0	0.092761	1	9895	9895		91.469	51.596	1	308980			5950	1424	3048	3074	6058	6058					0.15495430927262532
AVMKNQVAR	9	Unmodified	_AVMKNQVAR_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3;RUNX2|p.G462Efs*22|1|0.36|ENSG00000124813|chr6:45547119-45547119|G/-|frameshift_variant;nc|ENSG00000124813|Q13950-3|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;ENSG00000124813|ENST00000647337|RUNX2	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7872314453125	2	508.787118	1015.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.709	1	16.709	16.209	17.209	0								0	0	0	0.046123	1	4829	4829		87.754	28.972	1				5951	1102	3049	3075	6059	6059					0.052526250395885654
AVMNFVVRY	9	Unmodified	_AVMNFVVRY_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7923583984375	2	549.791869	1097.56919	1.8246	0.0010032	-1.2831	-0.00070543	0.54154	0.00029773	549.7909959194146	44.509	0.10769	44.509	44.458	44.565	0					6	4	2	0	0	0	0.099922	1	17837	17837		79.451	37.055	1	57610			5952	2439	3050	3076	6060	6060					0.02430393325107616
AVMNFVVRY	9	Unmodified	_AVMNFVVRY_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.791015625	2	549.791869	1097.56919	3.7624	0.0020685	-3.957	-0.0021755	-0.19463	-0.00010701	549.7900883156746	44.515	0.23671	44.515	44.422	44.659	0					15	9	3	0	0	0	0.16002	1	17832	17832		66.429	20.477	1	97290			5953	2439	3050	3076	6061	6061					0.02430393325107616
AVMPPGRSR	9	Unmodified	_AVMPPGRSR_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;EPS8L1|p.D510Efs*3|1|0.38|ENSG00000131037|chr19:55086071-55086072|AC/-|frameshift_variant;EPS8L1|p.G206Afs*54|1|0.23|ENSG00000131037|chr19:55081330-55081336|GCGGGGC/-|frameshift_variant;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7657470703125	2	485.766186	969.517819	0.021211	1.0304E-05	-0.71879	-0.00034916	-0.69758	-0.00033886	485.76582462432026	16.886	0.40276	16.886	16.77	17.172	0					26	15	2	0	0	0	0.4966	1	3911	3911		32.812	3.6629	1	76795			5954	3692;11522	3051	3077	6062	6062					0.03184069351073049
AVMPPGRSR	9	Unmodified	_AVMPPGRSR_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;EPS8L1|p.D510Efs*3|1|0.38|ENSG00000131037|chr19:55086071-55086072|AC/-|frameshift_variant;EPS8L1|p.G206Afs*54|1|0.23|ENSG00000131037|chr19:55081330-55081336|GCGGGGC/-|frameshift_variant;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.76605224609375	2	485.766186	969.517819	-0.27039	-0.00013135	-1.6215	-0.00078769	-1.8919	-0.00091904	485.76560829568217	17.157	1.4621	17.157	16.969	18.431	0					60	35	4	0	0	0	0.087861	1	4791	4791		82.241	26.736	1	521250			5955	3692;11522	3051	3077	6063	6063					0.03184069351073049
AVMPPGRSR	9	Unmodified	_AVMPPGRSR_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;EPS8L1|p.D510Efs*3|1|0.38|ENSG00000131037|chr19:55086071-55086072|AC/-|frameshift_variant;EPS8L1|p.G206Afs*54|1|0.23|ENSG00000131037|chr19:55081330-55081336|GCGGGGC/-|frameshift_variant;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7668151855469	2	485.766186	969.517819	-1.2389	-0.00060184	0.61791	0.00030016	-0.62103	-0.00030168	485.7666988814806	17.013	1.7586	17.013	16.744	18.503	0					94	59	3	0	0	0	0.24095	2	4437	4130;4437		56.721	21.103	1	318840			5956	3692;11522	3051	3077	6064;6065	6065					0.03184069351073049
AVMPPGRSR	9	Unmodified	_AVMPPGRSR_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;EPS8L1|p.D510Efs*3|1|0.38|ENSG00000131037|chr19:55086071-55086072|AC/-|frameshift_variant;EPS8L1|p.G206Afs*54|1|0.23|ENSG00000131037|chr19:55081330-55081336|GCGGGGC/-|frameshift_variant;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7657470703125	2	485.766186	969.517819	-2.9143	-0.0014157	2.2396	0.0010879	-0.67464	-0.00032772	485.76712324978183	18.757	0.46867	18.757	18.638	19.107	0					19	11	2	0	0	0	0.53083	1	4949	4949		29.15	3.6994	1	45776			5957	3692;11522	3051	3077	6066	6066					0.03184069351073049
AVMRFLTQR	9	Unmodified	_AVMRFLTQR_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;AOC3|p.R585Sfs*60|1|0.28|ENSG00000131471|chr17:42854594-42854595|-/C|frameshift_variant;AOC3|p.T657Lfs*22|1|0.15|ENSG00000131471|chr17:42855521-42855521|C/-|frameshift_variant;ENSG00000131471|ENST00000308423|AOC3;AOC2|p.P115Hfs*20|1|0.27|ENSG00000131480|chr17:42844965-42844965|C/-|frameshift_variant;AOC2|p.Q309Pfs*27|1|0.41|ENSG00000131480|chr17:42845549-42845567|TTCAGTTCTCGCCCCAGGG/-|frameshift_variant;AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant;nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.31591796875	2	561.316043	1120.61753	-0.0061513	-3.4528E-06	0.3833	0.00021515	0.37715	0.0002117	561.3163563823196	31.807	0.26037	31.807	31.685	31.945	0					10	5	3	0	0	0	0.27249	1	12033	12033		52.937	1.744	1	150830			5958	172	3052	3078	6067	6067					0.062048869649970584
AVMSATFAK	9	Unmodified	_AVMSATFAK_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.2435302734375	2	463.244221	924.473888	0.10578	4.9004E-05	-0.85709	-0.00039704	-0.75131	-0.00034804	463.2439700880482	28.455	0.10553	28.455	28.368	28.473	0					5	3	2	0	0	0	0.17854	1	8895	8895		64.207	10.856	1	44921			5959	1583	3053	3079	6068	6068					0.008630401340724347
AVMSATFAKF	10	Unmodified	_AVMSATFAKF_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7786865234375	2	536.778428	1071.5423	1.9458	0.0010444	-2.0471	-0.0010988	-0.10135	-5.4401E-05	536.7774470608745	42.514	0.079185	42.514	42.443	42.522	0					4	2	2	0	0	0	0.34667	1	16967	16967		62.107	1.1355	1	68841			5960	1583	3054	3080	6069	6069					0.009392847139224614
AVMVPMHGVL	10	Unmodified	_AVMVPMHGVL_					0	0	0			REV__ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	REV__ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2828979492188	2	527.282823	1052.55109	0.32329	0.00017046	-0.35221	-0.00018571	-0.028924	-1.5251E-05	527.2827149770613	24.588	0.24095	24.588	24.498	24.739	0					17	8	3	0	0	0	0.50739	1	7539	7539		44.531	6.7195	1	303190	+		5961	12209	3055	3081	6070	6070					0.026919350787693475
AVMVPMHGVL	10	Unmodified	_AVMVPMHGVL_					0	0	0			REV__ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	REV__ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.282470703125	2	527.282823	1052.55109	-1.2015	-0.00063351	0.63647	0.0003356	-0.565	-0.00029792	527.2832254422375	24.634	0.23818	24.634	24.533	24.771	0					13	5	3	0	0	0	0.59237	1	7723	7723		35.201	2.3883	1	586220	+		5962	12209	3055	3081	6071	6071					0.026919350787693475
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.8040771484375	2	533.803823	1065.59309	1.111	0.00059303	-0.61619	-0.00032893	0.49477	0.00026411	533.8034008389992	20.733	0.32664	20.733	20.636	20.962	0					29	11	4	0	0	0	0.21577	1	5583	5583		77.533	4.654	1	7432600			5963	3774	3056	3082	6072	6072					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	356.204833984375	3	356.204974	1065.59309	0.43693	0.00015564	-0.75892	-0.00027033	-0.32199	-0.00011469	356.2046861056172	20.733	0.22134	20.733	20.636	20.857	0					22	8	4	0	0	0	0.49411	1	5594	5594		66.962	31.784	1	5337700			5964	3774	3056	3082	6073	6073					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.8040161132812	2	533.803823	1065.59309	2.2938	0.0012244	-2.0915	-0.0011164	0.20233	0.000108	533.8024689832155	21.056	0.77636	21.056	20.848	21.624	0					55	18	6	0	0	0	0.023179	1	6624	6624		122.94	2.3182	1	48584000			5965	3774	3056	3082	6074	6074					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8037109375	2	533.803823	1065.59309	1.7563	0.00093754	-1.5801	-0.00084348	0.1762	9.4057E-05	533.80284858676	20.972	0.40971	20.972	20.863	21.273	0					20	8	5	0	0	0	0.010724	1	6890	6890		140.11	24.618	1	21064000			5966	3774	3056	3082	6075	6075					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.305419921875	2	533.803823	1065.59309	1.116	0.00059574	-0.579	-0.00030907	0.53703	0.00028667	533.8034234432707	20.834	0.38191	20.834	20.738	21.12	0					26	9	5	0	0	0	0.21577	1	5923	5923		77.533	2.49	1	5893900			5967	3774	3056	3082	6076	6076					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	356.20489501953125	3	356.204974	1065.59309	-0.0868	-3.0919E-05	-0.23958	-8.5341E-05	-0.32638	-0.00011626	356.2048990909312	20.834	0.3405	20.834	20.738	21.078	0					20	8	3	0	0	0	0.44601	1	5942	5942		72.243	29.905	1	2209500			5968	3774	3056	3082	6077	6077					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8036499023438	2	533.803823	1065.59309	0.71298	0.00038059	-0.47423	-0.00025314	0.23875	0.00012745	533.8033121186329	20.951	0.60996	20.951	20.844	21.454	0					34	12	5	0	0	0	0.010724	1	6751	6751		140.11	24.618	1	12940000			5969	3774	3056	3082	6078	6078					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8038940429688	2	533.803823	1065.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.953	1	20.953	20.453	21.453	0								0	0	0	0.012545	1	6742	6742		133.99	18.499	1				5970	3774	3056	3082	6079	6079					0.06291950083118536
AVNALQSVY	9	Unmodified	_AVNALQSVY_					0	0	0		ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.75836181640625	2	482.758549	963.502546	0.043839	2.1164E-05	-0.32971	-0.00015917	-0.28587	-0.000138	482.7584356296436	33.645	0.20084	33.645	33.562	33.763	0					19	8	3	0	0	0	0.25716	1	10950	10950		54.776	7.119	1	229690			5971	5754	3057	3083	6080	6080					0.019334810348595965
AVNALQSVY	9	Unmodified	_AVNALQSVY_					0	0	0		ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.75860595703125	2	482.758549	963.502546	0.58211	0.00028102	-0.87414	-0.000422	-0.29202	-0.00014098	482.758472795474	33.919	0.35007	33.919	33.698	34.048	0					25	9	5	0	0	0	0.0406	1	12583	12583		98.629	13.714	1	1363500			5972	5754	3057	3083	6081	6081					0.019334810348595965
AVNALQSVY	9	Unmodified	_AVNALQSVY_					0	0	0		ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7585144042969	2	482.758549	963.502546	0.88859	0.00042897	-0.96923	-0.0004679	-0.08064	-3.893E-05	482.7580951834135	33.9	0.38292	33.9	33.767	34.15	0					15	8	3	0	0	0	0.098791	1	12943	12943		79.713	7.8351	1	1651400			5973	5754	3057	3083	6082	6082					0.019334810348595965
AVNEAILLK	9	Unmodified	_AVNEAILLK_					0	0	0		FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant;ENSG00000158169|ENST00000289081|FANCC	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.754	1	34.754	34.254	35.254	0								0	0	0	0.11736	1	13352	13352		67.494	2.0283	1				5974	5248	3058	3084	6083	6083					0.09987217482716915
AVNEVMKL	8	Unmodified	_AVNEVMKL_					0	0	0			REV__SETD1A|p.R812L|1|0.31|ENSG00000099381|chr16:30966316-30966316|G/T|missense_variant	REV__SETD1A|p.R812L|1|0.31|ENSG00000099381|chr16:30966316-30966316|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2512512207031	2	452.252046	902.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.92	1	35.92	35.42	36.42	0								0	0	0	1.7419	1	12826	12826		51.335	8.861	1		+		5975	21506	3059	3085	6084	6084					0.0343932665111879
AVNFLLTAK	9	Unmodified	_AVNFLLTAK_					0	0	0		nc|ENSG00000211829|B7Z8K6|TRDC	nc|ENSG00000211829|B7Z8K6|TRDC	nc|ENSG00000211829|B7Z8K6|TRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7950744628906	2	488.794935	975.575317	0.77017	0.00037646	-1.3331	-0.00065161	-0.56292	-0.00027515	488.7944006567096	40.693	0.17251	40.693	40.595	40.767	0					14	8	3	0	0	0	0.36135	1	15505	15505		45.022	8.5755	1	80240			5976	11746	3060	3086	6085	6085					0.08655234828268021
AVNIVCHSK	9	Unmodified	_AVNIVCHSK_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000461434.1_1_1:151227258-151234901:+|nuORF;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000159352|P55036-2|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7606201171875	2	485.760569	969.506586	0.019766	9.6014E-06	-0.62033	-0.00030133	-0.60057	-0.00029173	485.760404582864	19.399	0.16344	19.399	19.361	19.525	0					9	5	3	0	0	0	0.037098	1	5017	5017		106.68	48.872	1	200710			5977	5310	3061	3087	6086	6086					0.020612472569268903
AVNIVCHSK	9	Unmodified	_AVNIVCHSK_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000461434.1_1_1:151227258-151234901:+|nuORF;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000159352|P55036-2|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.17608642578125	3	324.176138	969.506586	0.63851	0.00020699	-1.4525	-0.00047086	-0.81398	-0.00026387	324.175842920687	19.75	0.27592	19.75	19.661	19.937	0					17	6	4	0	0	0	0.19952	1	6023	6023		61.691	3.4614	1	571560			5978	5310	3061	3087	6087	6087					0.020612472569268903
AVNIVCHSK	9	Unmodified	_AVNIVCHSK_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000461434.1_1_1:151227258-151234901:+|nuORF;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000159352|P55036-2|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7604064941406	2	485.760569	969.506586	-0.26944	-0.00013088	0.10969	5.3281E-05	-0.15976	-7.7603E-05	485.76096524061643	19.743	0.37185	19.743	19.647	20.019	0					21	8	4	0	0	0	0.029172	1	6016	6016		104.01	10.007	1	1679000			5979	5310	3061	3087	6088	6088					0.020612472569268903
AVNIVCHSK	9	Unmodified	_AVNIVCHSK_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000461434.1_1_1:151227258-151234901:+|nuORF;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000159352|P55036-2|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7601318359375	2	485.760569	969.506586	-0.8065	-0.00039176	0.6717	0.00032629	-0.13479	-6.5477E-05	485.7609184555413	19.439	0.14808	19.439	19.369	19.517	0					8	4	3	0	0	0	0.15593	1	5256	5256		68.846	20.931	1	184970			5980	5310	3061	3087	6089	6089					0.020612472569268903
AVNIVCHSK	9	Unmodified	_AVNIVCHSK_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000461434.1_1_1:151227258-151234901:+|nuORF;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000159352|P55036-2|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.17626953125	3	324.176138	969.506586	0.008823	2.8602E-06	-0.26461	-8.5781E-05	-0.25579	-8.2921E-05	324.17611657275455	19.648	0.21645	19.648	19.541	19.757	0					10	4	4	0	0	0	0.21263	1	6103	6103		60.118	14.146	1	439690			5981	5310	3061	3087	6090	6090					0.020612472569268903
AVNKQLADK	9	Unmodified	_AVNKQLADK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7848205566406	2	493.785099	985.555644	-1.2693	-0.00062678	-0.12098	-5.9737E-05	-1.3903	-0.00068652	493.78514951382436	15.391	0.083985	15.391	15.348	15.432	0					6	3	2	0	0	0	0.076532	1	3506	3506		85.862	31.086	1	77026			5982	5918	3062	3088	6091	6091					0.062288588175078985
AVNKQLADK	9	Unmodified	_AVNKQLADK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7848815917969	2	493.785099	985.555644	0.641	0.00031651	-1.225	-0.00060488	-0.58398	-0.00028836	493.7845220593019	15.626	0.26933	15.626	15.467	15.736	0					8	5	2	0	0	0	0.047855	1	4322	4322		96.034	21.869	1	949870			5983	5918	3062	3088	6092	6092					0.062288588175078985
AVNKQLADK	9	Unmodified	_AVNKQLADK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7846984863281	2	493.785099	985.555644	0.025316	1.2501E-05	-0.49679	-0.00024531	-0.47147	-0.00023281	493.7847382153017	15.415	0.077505	15.415	15.375	15.453	0					4	2	2	0	0	0	0.13726	1	3461	3461		70.816	19.624	1	87424			5984	5918	3062	3088	6093	6093					0.062288588175078985
AVNKQLADK	9	Unmodified	_AVNKQLADK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7848815917969	2	493.785099	985.555644	0.88292	0.00043597	-1.544	-0.00076243	-0.66113	-0.00032645	493.7842166336365	15.639	0.3522	15.639	15.445	15.797	0					13	7	3	0	0	0	0.070005	1	4178	4178		88.177	19.39	1	599320			5985	5918	3062	3088	6094	6094					0.062288588175078985
AVNKQLHQK	9	Unmodified	_AVNKQLHQK_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.8769226074219	3	355.876969	1064.60908	0.71523	0.00025453	-0.81726	-0.00029084	-0.10203	-3.631E-05	355.8766515488237	13.081	0.081953	13.081	13.046	13.127	0					4	2	2	0	0	0	0.10915	1	2907	2907		77.318	26.125	1	452580			5986	3573	3063	3089	6095	6095					0.07935656320023554
AVNKQLHQK	9	Unmodified	_AVNKQLHQK_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.3125	2	533.311815	1064.60908	0.13993	7.4628E-05	2.4707	0.0013177	2.6107	0.0013923	533.3124232023706	13.075	0.1546	13.075	13.034	13.189	0					10	4	3	0	0	0	0.016683	1	2899	2899		124.59	14.257	1	686130			5987	3573	3063	3089	6096	6096					0.07935656320023554
AVNKQLHQK	9	Unmodified	_AVNKQLHQK_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.3123168945312	2	533.311815	1064.60908	0.24088	0.00012846	0.91806	0.00048961	1.1589	0.00061808	533.3125253341456	12.869	0.05925	12.869	12.829	12.888	0					5	3	2	0	0	0	0.026538	1	2587	2587		96.19	2.184	1	79136			5988	3573	3063	3089	6097	6097					0.07935656320023554
AVNKQLHQK	9	Unmodified	_AVNKQLHQK_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.3121948242188	2	533.311815	1064.60908	0.28945	0.00015437	0.31236	0.00016658	0.60181	0.00032095	533.3120941044385	13.093	0.19259	13.093	13.041	13.234	0					6	4	2	0	0	0	0.012231	1	3114	3114		133.81	0.34359	1	687450			5989	3573	3063	3089	6098	6098					0.07935656320023554
AVNKQLHQK	9	Unmodified	_AVNKQLHQK_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.8769226074219	3	355.876969	1064.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.097	1	13.097	12.597	13.597	0								0	0	0	0.23445	1	2955	2955		45.972	6.7194	1				5990	3573	3063	3089	6099	6099					0.07935656320023554
AVNLFSCLCM	10	Oxidation (M)	_AVNLFSCLCM(Oxidation (M))_		AVNLFSCLCM(1)		AVNLFSCLCM(55)	0	0	1		ENST00000475291.5_1_4:75026231-75026288:+|nuORF	ENST00000475291.5_1_4:75026231-75026288:+|nuORF	ENST00000475291.5_1_4:75026231-75026288:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7501220703125	2	558.747956	1115.48136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.794	1	41.794	41.294	42.294	0								0	0	0	0.27541	1	16644	16644		54.776	8.8244	1				5991	9898	3064	3090	6100	6100		397			-0.07176311652165168
AVNMPIIPIGL	11	Unmodified	_AVNMPIIPIGL_					0	0	0			REV__ARAP2|p.T628P|1|0.27|ENSG00000047365|chr4:36167023-36167023|T/G|missense_variant	REV__ARAP2|p.T628P|1|0.27|ENSG00000047365|chr4:36167023-36167023|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.8961486816406	3	379.89486	1136.66275	3.241	0.0012312	0.19015	7.2238E-05	3.4311	0.0013035	379.894971925332	19.867	0.27001	19.867	19.757	20.027	0					12	5	3	0	0	0	0.59204	1	6228	6228		37.508	5.9784	1	892700	+		5992	12190	3065	3091	6101	6101					0.09988692707543123
AVNMVPFPR	9	Unmodified	_AVNMVPFPR_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7784423828125	2	515.778762	1029.54297	0.032926	1.6983E-05	0.54315	0.00028015	0.57608	0.00029713	515.7790860126946	38.871	0.33879	38.871	38.751	39.09	0					26	12	3	0	0	0	0.22377	1	14770	14770		58.782	10.866	1	267340			5993	7342;8050	3066	3092	6102	6102					0.02938124153638455
AVNMVPFPR	9	Unmodified	_AVNMVPFPR_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7786865234375	2	515.778762	1029.54297	-0.083608	-4.3123E-05	1.2529	0.00064623	1.1693	0.00060311	515.7793622781634	38.602	0.16535	38.602	38.548	38.714	0					16	9	2	0	0	0	0.37197	1	13015	13015		44.117	1.6423	1	85207			5994	7342;8050	3066	3092	6103	6103					0.02938124153638455
AVNMVPFPR	9	Unmodified	_AVNMVPFPR_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7786865234375	2	515.778762	1029.54297	1.438	0.00074168	-1.1195	-0.00057743	0.31845	0.00016425	515.7781222310464	38.858	0.34958	38.858	38.707	39.056	0					33	12	3	0	0	0	0.087582	1	15239	15239		82.305	26.801	1	514120			5995	7342;8050	3066	3092	6104	6104					0.02938124153638455
AVNMVPFPR	9	Unmodified	_AVNMVPFPR_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7793579101562	2	515.778762	1029.54297	-1.5392	-0.00079388	1.7696	0.0009127	0.23037	0.00011882	515.7797351960457	38.569	0.16112	38.569	38.498	38.659	0					14	8	2	0	0	0	0.26904	1	13785	13785		53.351	7.3995	1	60478			5996	7342;8050	3066	3092	6105	6105					0.02938124153638455
AVNMVPFPR	9	Unmodified	_AVNMVPFPR_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.779052734375	2	515.778762	1029.54297	1.5132	0.0007805	-1.382	-0.00071281	0.13125	6.7696E-05	515.7781586883743	38.784	0.30972	38.784	38.627	38.937	0					14	6	3	0	0	0	0.1115	1	15266	15266		76.774	28.859	1	478160			5997	7342;8050	3066	3092	6106	6106					0.02938124153638455
AVNNMFVSK	9	Unmodified	_AVNNMFVSK_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.260498046875	2	505.260402	1008.50625	0.71497	0.00036125	-1.1051	-0.00055839	-0.39018	-0.00019714	505.2600283323826	29.87	0.27919	29.87	29.756	30.035	0					25	11	3	0	0	0	0.02429	1	9446	9446		114.89	54.491	1	359990			5998	2061	3067	3093	6107	6107					0.0023382753706755466
AVNNMFVSK	9	Unmodified	_AVNNMFVSK_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.26019287109375	2	505.260402	1008.50625	0.80722	0.00040786	-1.314	-0.00066389	-0.50674	-0.00025604	505.2598519626703	30.129	0.52139	30.129	29.895	30.416	0					39	13	5	0	0	0	0.011389	1	10842	10842		138.06	60.119	1	2697800			5999	2061	3067	3093	6108	6108					0.0023382753706755466
AVNNMFVSK	9	Unmodified	_AVNNMFVSK_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2605895996094	2	505.260402	1008.50625	0.11561	5.8416E-05	-0.338	-0.00017078	-0.22239	-0.00011236	505.2604356077229	29.912	0.26412	29.912	29.739	30.003	0					13	7	3	0	0	0	0.026538	1	10100	10100		112.41	39.791	1	193380			6000	2061	3067	3093	6109	6109					0.0023382753706755466
AVNNMFVSK	9	Unmodified	_AVNNMFVSK_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2599792480469	2	505.260402	1008.50625	0.11063	5.5896E-05	0.31248	0.00015788	0.42311	0.00021378	505.26019610048553	29.903	0.31438	29.903	29.803	30.118	0					17	8	3	0	0	0	0.037924	1	10123	10123		101.25	47.901	1	275840			6001	2061	3067	3093	6110	6110					0.0023382753706755466
AVNNMFVSK	9	Unmodified	_AVNNMFVSK_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.26031494140625	2	505.260402	1008.50625	-0.30905	-0.00015615	-0.016202	-8.186E-06	-0.32525	-0.00016434	505.2605390790361	30.056	0.36203	30.056	29.947	30.309	0					21	7	4	0	0	0	0.0088974	1	11068	11068		143.37	68.857	1	2191600			6002	2061	3067	3093	6111	6111					0.0023382753706755466
AVNNMFVSK	9	Unmodified	_AVNNMFVSK_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.26025390625	2	505.260402	1008.50625	1.2344	0.00062368	-0.298	-0.00015057	0.93637	0.00047311	505.2598045976825	30.039	0.56275	30.039	29.83	30.393	0					36	11	5	0	0	0	0.02429	1	11109	11109		114.89	42.275	1	1915300			6003	2061	3067	3093	6112	6112					0.0023382753706755466
AVNPGMAHM	9	Unmodified	_AVNPGMAHM_					0	0	0			REV__tr|U7T3F0|U7T3F0_FUSNUOxaloacetatedecarboxylase,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00407PE=4SV=1	REV__tr|U7T3F0|U7T3F0_FUSNUOxaloacetatedecarboxylase,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00407PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2120666503906	2	464.212398	926.410242	0.72299	0.00033562	-1.23	-0.00057097	-0.50699	-0.00023535	464.2117577629658	29.436	0.4079	29.436	29.241	29.648	0					23	8	5	0	0	0	0.41354	1	10777	10777		40.573	4.9543	1	579790	+		6004	22133	3068	3094	6113	6113					-0.055906435746692296
AVNPKEIASK	10	Unmodified	_AVNPKEIASK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.806640625	2	528.806031	1055.59751	1.9982	0.0010567	-1.1675	-0.00061736	0.83074	0.0004393	528.8054868327357	20.211	0.23768	20.211	19.988	20.226	0					13	5	3	0	0	0	0.46989	1	6186	6186		48.602	23.027	1	122410			6005	2826	3069	3095	6114	6114					0.07193414506036788
AVNPVAVGK	9	Unmodified	_AVNPVAVGK_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.7584228515625	2	427.758352	853.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.053	1	23.053	22.553	23.553	0								0	0	0	0.24724	1	7577	7577		44.117	10.601	1				6006	6843	3070	3096	6115	6115					0.0695410610566114
AVNRLPPNK	9	Unmodified	_AVNRLPPNK_					0	0	0			REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5344543457031	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.53	1	21.53	21.03	22.03	0								0	0	0	0.37233	1	6196	6196		19.104	0	1		+		6007	13727	3071	3097	6116	6116					0.0841227129130857
AVNSIFLSH	9	Unmodified	_AVNSIFLSH_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2662353515625	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.453	1	38.453	37.953	38.953	0								0	0	0	0.099216	1	14613	14613		71.877	3.0906	1				6008	3304	3072	3098	6117	6117					0.024731872717552505
AVNSIFLSH	9	Unmodified	_AVNSIFLSH_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.26580810546875	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.403	1	38.403	37.903	38.903	0								0	0	0	0.095784	1	15064	15064		72.879	16.158	1				6009	3304	3072	3098	6118	6118					0.024731872717552505
AVNSIFLSH	9	Unmodified	_AVNSIFLSH_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2667541503906	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.35	1	38.35	37.85	38.85	0								0	0	0	0.13137	1	15071	15071		64.207	0	1				6010	3304	3072	3098	6119	6119					0.024731872717552505
AVPCGSGG	8	Unmodified	_AVPCGSGG_					0	0	0		ENST00000431489.5_1_2:62932928-62934072:+|nuORF	ENST00000431489.5_1_2:62932928-62934072:+|nuORF	ENST00000431489.5_1_2:62932928-62934072:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	324.14337158203125	2	324.144507	646.27446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.997	1	43.997	43.497	44.497	0								0	0	0	1.7419	1	15174	15174		15.636	0	1				6011	9502	3073	3099	6120	6120					-0.06282595093830423
AVPGVRKLS	9	Unmodified	_AVPGVRKLS_					0	0	0			REV__ENST00000582287.6_1_19:18545725-18546537:-|nuORF	REV__ENST00000582287.6_1_19:18545725-18546537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7925109863281	2	463.792727	925.5709	0.69828	0.00032386	-1.2004	-0.00055673	-0.50211	-0.00023287	463.7922436423796	28.454	0.31346	28.454	28.365	28.678	0					11	6	3	0	0	0	0.45358	1	10427	10427		37.159	0	1	723520	+		6012	13787	3074	3100	6121	6121					0.1051377040537318
AVPLTIRGP	9	Unmodified	_AVPLTIRGP_					0	0	0		ENST00000577043.1_1_16:2867692-2871170:+|nuORF	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.28692626953125	2	462.287277	922.560001	0.71892	0.00033235	-1.7602	-0.00081372	-1.0413	-0.00048138	462.2863939655211	31.996	0.70995	31.996	31.75	32.46	0					34	15	4	0	0	0	0.2873	1	12110	12110		51.335	1.8939	1	728950			6013	10834	3075	3101	6122	6122					0.09562368031083679
AVPSNNIY	8	Unmodified	_AVPSNNIY_					0	0	0		nc|ENSG00000151090|P10828-2|THRB	nc|ENSG00000151090|P10828-2|THRB	nc|ENSG00000151090|P10828-2|THRB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.22412109375	2	439.224342	876.434132	-1.0039	-0.00044094	0.46757	0.00020537	-0.53634	-0.00023557	439.2244957135139	20.56	0.26096	20.56	20.438	20.699	0					21	8	4	0	0	0	0.60719	1	5731	5731		47.916	3.3845	1	1494100			6014	11581	3076	3102	6123	6123					-0.009027635450138405
AVPTNIIAAK	10	Unmodified	_AVPTNIIAAK_					0	0	0		ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H	ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENST00000521335.1_1_8:54745492-54754250:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.30535888671875	2	499.305667	996.596781	0.86388	0.00043134	-0.93154	-0.00046512	-0.067666	-3.3786E-05	499.3051684621938	30.693	0.36235	30.693	30.546	30.909	0					29	8	4	0	0	0	0.33224	1	11486	11486		59.931	8.5953	1	2008600			6015	1216	3077	3103	6124	6124					0.09834619856985682
AVPTTVAKPA	10	Unmodified	_AVPTTVAKPA_					0	0	0			REV__ENST00000483823.1_1_3:88997907-88998639:+|nuORF	REV__ENST00000483823.1_1_3:88997907-88998639:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.784423828125	2	477.784567	953.554582	-1.4739	-0.00070422	0.97222	0.00046451	-0.50171	-0.00023971	477.78494307855806	32.987	0.58386	32.987	32.683	33.267	0					59	23	3	0	0	0	0.20011	1	11098	11098		79.451	10.664	1	546310	+		6016	19626	3078	3104	6125	6125					0.07594644448602139
AVQATKNYNK	10	Unmodified	_AVQATKNYNK_					0	0	0		DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.3088989257812	2	568.806562	1135.59857	1.1516	0.00065504	-0.41899	-0.00023832	0.73262	0.00041672	569.3082125400668	14.403	0.057138	14.403	14.383	14.441	0					6	3	2	0	0	0	0.54861	1	2966	2966		40.058	16.535	1	52627			6017	779	3079	3105	6126	6126					0.036196288749124506
AVQATKNYNK	10	Unmodified	_AVQATKNYNK_					0	0	0		DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.8068237304688	2	568.806562	1135.59857	0.11137	6.335E-05	0.52459	0.00029839	0.63597	0.00036174	568.8070647831822	14.414	0.055412	14.414	14.373	14.429	0					5	3	2	0	0	0	0.19191	1	3119	3119		80.455	36.077	1	47471			6018	779	3079	3105	6127	6127					0.036196288749124506
AVQATKNYNK	10	Unmodified	_AVQATKNYNK_					0	0	0		DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.8074951171875	2	568.806562	1135.59857	-1.2948	-0.00073647	3.0909	0.0017581	1.7961	0.0010217	568.8084551170069	14.465	0.077894	14.465	14.43	14.508	0					8	4	2	0	0	0	0.2538	1	3071	3071		72.879	21.687	1	115140			6019	779	3079	3105	6128	6128					0.036196288749124506
AVQAYVSALQ	10	Unmodified	_AVQAYVSALQ_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;ENST00000488174.5_1_X:70752999-70764494:+|nuORF	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.5248107910156	3	350.525713	1048.55531	0.49633	0.00017398	-3.8122	-0.0013363	-3.3158	-0.0011623	350.5246541438332	13.224	0.16173	13.224	13.142	13.304	0					10	4	3	0	0	0	0.59277	1	2969	2969		35.152	2.4015	1	1015300			6020	4769	3080	3106	6129	6129					0.032974390976505674
AVQDKGSIHK	10	Unmodified	_AVQDKGSIHK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.8018188476562	2	541.80128	1081.58801	1.0871	0.000589	-0.21029	-0.00011393	0.87683	0.00047507	541.801161966149	13.468	0.067145	13.468	13.428	13.496	0					7	3	3	0	0	0	0.39827	1	2650	2650		56.434	6.8977	1	132080			6021	6697	3081	3107	6130	6130					0.05047646220509705
AVQDKGSIHK	10	Unmodified	_AVQDKGSIHK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.8017578125	2	541.80128	1081.58801	0.29752	0.0001612	0.79402	0.0004302	1.0915	0.0005914	541.801641491214	13.741	0.20618	13.741	13.653	13.859	0					8	5	2	0	0	0	0.065778	1	3201	3201		104.01	43.042	1	1362300			6022	6697	3081	3107	6131	6131					0.05047646220509705
AVQDKGSIHK	10	Unmodified	_AVQDKGSIHK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.8021240234375	2	541.80128	1081.58801	0.14896	8.0704E-05	1.4273	0.00077332	1.5763	0.00085402	541.8022388692552	13.497	0.066764	13.497	13.454	13.521	0					5	3	2	0	0	0	0.28675	1	2793	2793		68.846	10.064	1	75673			6023	6697	3081	3107	6132	6132					0.05047646220509705
AVQDKGSIHK	10	Unmodified	_AVQDKGSIHK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.8018188476562	2	541.80128	1081.58801	2.029	0.0010993	-1.2675	-0.00068675	0.76148	0.00041257	541.8006019528476	13.741	0.20114	13.741	13.639	13.84	0					8	4	3	0	0	0	0.11048	1	3423	3423		93.598	10.847	1	840650			6024	6697	3081	3107	6133	6133					0.05047646220509705
AVQDKGSIHK	10	Unmodified	_AVQDKGSIHK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.8021850585938	2	541.80128	1081.58801	-1.4848	-0.00080446	3.287	0.0017809	1.8022	0.00097644	541.8032278002944	13.495	0.052035	13.495	13.468	13.52	0					4	2	2	0	0	0	0.073977	1	2723	2723		101.25	29.957	1	107890			6025	6697	3081	3107	6134	6134					0.05047646220509705
AVQDRRVFLK	10	Unmodified	_AVQDRRVFLK_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.2469787597656	3	411.247173	1230.71969	0.056588	2.3271E-05	-0.79459	-0.00032677	-0.738	-0.0003035	411.2469006620591	22.669	0.20982	22.669	22.567	22.777	0					8	4	2	0	0	0	0.65051	1	7718	7718		28.081	1.3886	1	131510			6026	8934	3082	3108	6135	6135					0.11355876308266488
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.771728515625	2	495.771991	989.529429	0.055339	2.7435E-05	-0.42537	-0.00021089	-0.37003	-0.00018345	495.77182412636324	32.125	0.68895	32.125	32.021	32.71	0					78	29	5	0	0	0	0.0055674	2	10351	10351;10489		155.58	38.681	1	6997700			6027	6155	3083	3109	6136;6137	6136					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7716979980469	2	495.771991	989.529429	0.73332	0.00036356	-0.38311	-0.00018993	0.35021	0.00017363	495.771956076402	32.429	0.65154	32.429	32.303	32.954	0					58	16	5	0	0	0	1.3754E-05	2	11874	11874;12064		204.62	61.518	1	40605000			6028	6155	3083	3109	6138;6139	6138					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7718505859375	2	495.771991	989.529429	-0.037059	-1.8373E-05	-0.39216	-0.00019442	-0.42922	-0.0002128	495.771865817497	32.377	1.0045	32.377	32.242	33.246	0					54	24	5	0	0	0	0.011389	2	12308	12308;12640		138.06	44.867	1	10120000			6029	6155	3083	3109	6140;6141	6140					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.77166748046875	2	495.771991	989.529429	0.72396	0.00035892	-0.61233	-0.00030358	0.11163	5.5344E-05	495.7718552252306	32.409	0.70072	32.409	32.274	32.974	0					57	17	5	0	0	0	0.003936	2	12280	12280;12448		163.15	58.404	1	27497000			6030	6155	3083	3109	6142;6143	6142					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7722473144531	2	495.771991	989.529429	0.039081	1.9375E-05	-0.3297	-0.00016346	-0.29062	-0.00014408	495.7718351541179	32.219	0.52106	32.219	32.048	32.569	0					41	15	4	0	0	0	0.003936	2	11145	11145;11327		163.15	58.404	1	5116700			6031	6155	3083	3109	6144;6145	6144					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7722473144531	2	495.771991	989.529429	0.11073	5.4898E-05	-0.39885	-0.00019774	-0.28812	-0.00014284	495.77180883215675	32.21	0.74478	32.21	32.076	32.821	0					57	22	5	0	0	0	0.011389	2	11142	11142;11305		138.06	44.867	1	6382100			6032	6155	3083	3109	6146;6147	6146					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7724914550781	2	495.771991	989.529429	-0.67125	-0.00033278	1.3607	0.00067457	0.68941	0.00034179	495.77279492037	32.379	0.9954	32.379	32.219	33.215	0					53	20	5	0	0	0	0.0011548	2	12211	12211;12377		181.41	64.503	1	36723000			6033	6155	3083	3109	6148;6149	6148					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7720031738281	2	495.771991	989.529429	0.94934	0.00047066	-0.3302	-0.0001637	0.61914	0.00030695	495.77203923439816	32.364	0.76899	32.364	32.203	32.972	0					47	15	5	0	0	0	5.4275E-05	2	12179	12179;12349		195.05	78.142	1	43472000			6034	6155	3083	3109	6150;6151	6150					0.03424589646044751
AVQEFGLARFK	11	Unmodified	_AVQEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.571533203125	3	422.571545	1264.69281	-0.34263	-0.00014479	0.012946	5.4705E-06	-0.32969	-0.00013932	422.57151740060937	36.141	0.61674	36.141	36.03	36.647	0					25	12	3	0	0	0	0.69004	1	14002	14002		28.577	8.5463	1	1263300			6035	6155	3084	3110	6152	6152					0.07104767697069292
AVQEQMRSK	9	Unmodified	_AVQEQMRSK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7799682617188	2	538.77949	1075.54443	0.86015	0.00046343	-0.2518	-0.00013566	0.60835	0.00032777	538.779455162855	14.975	0.11083	14.975	14.918	15.029	0					10	4	3	0	0	0	0.037712	1	3165	3165		101.46	37.253	1	410860			6036	7482	3085	3111	6153	6153					0.009677134517232844
AVQEQMRSK	9	Unmodified	_AVQEQMRSK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.780029296875	2	538.77949	1075.54443	0.24417	0.00013156	-0.012953	-6.9786E-06	0.23122	0.00012458	538.7797520636055	15.238	0.34917	15.238	15.101	15.45	0					29	8	6	0	0	0	0.0023831	1	3896	3896		172.25	67.502	1	3360900			6037	7482	3085	3111	6154	6154					0.009677134517232844
AVQEQMRSK	9	Unmodified	_AVQEQMRSK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.779541015625	2	538.77949	1075.54443	-0.037441	-2.0173E-05	-0.3853	-0.00020759	-0.42274	-0.00022777	538.7795942698303	14.987	0.15294	14.987	14.919	15.072	0					16	7	4	0	0	0	0.032181	1	3335	3335		106.88	29.563	1	359990			6038	7482	3085	3111	6155	6155					0.009677134517232844
AVQEQMRSK	9	Unmodified	_AVQEQMRSK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7796630859375	2	538.77949	1075.54443	0.3009	0.00016212	-0.55187	-0.00029734	-0.25097	-0.00013522	538.7793648346722	15.221	0.25732	15.221	15.113	15.37	0					14	5	4	0	0	0	0.019258	1	4125	4125		123.21	51.331	1	2627700			6039	7482	3085	3111	6156	6156					0.009677134517232844
AVQEQMRSK	9	Unmodified	_AVQEQMRSK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7799072265625	2	538.77949	1075.54443	3.4008	0.0018323	-3.1785	-0.0017125	0.22239	0.00011982	538.7781341783115	15.186	0.2684	15.186	15.079	15.347	0					13	5	4	0	0	0	0.019258	1	3958	3958		123.21	27.018	1	2966000			6040	7482	3085	3111	6157	6157					0.009677134517232844
AVQGCVLQK	9	Carbamidomethyl (C)	_AVQGC(Carbamidomethyl (C))VLQK_	AVQGC(1)VLQK		AVQGC(96)VLQK		0	1	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7736511230469	2	501.773677	1001.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.358	1	22.358	21.858	22.858	0								0	0	0	0.029117	1	7250	7250		96.19	8.494	1				6041	2422	3086	3112	6158	6158	98				0.0320951642838736
AVQGGKIKRK	10	Unmodified	_AVQGGKIKRK_					0	0	0		nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.791015625	2	542.851107	1083.68766	3.605	0.001957	-2.7766	-0.0015073	0.82845	0.00044973	543.3513350661169	12.478	0.1664	12.478	12.404	12.571	0					5	4	2	0	0	0	0.55603	1	2655	2655		39.253	21.888	1	77550			6042	5268	3087	3113	6159	6159					0.14916508625105962
AVQGHASQEK	10	Unmodified	_AVQGHASQEK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.L2424_I2425insETY|1|0.09|ENSG00000137076|chr9:35698422-35698423|-/TATGTTTCT|inframe_insertion	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7671508789062	2	527.767437	1053.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.455	1	11.455	10.955	11.955	0								0	0	0	0.028659	1	2348	2348		96.665	18.401	1				6043	4144	3088	3114	6160	6160					-0.004298037102898888
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.8326416015625	2	541.832049	1081.64954	0.29973	0.0001624	0.48049	0.00026035	0.78022	0.00042275	541.8322259959668	37.815	0.15383	37.815	37.729	37.882	0					14	5	3	0	0	0	0.24855	1	14353	14353		75.566	26.964	1	279280			6044	6024	3089	3115	6161	6161					0.1119857791979939
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.831787109375	2	541.832049	1081.64954	0.15124	8.1946E-05	0.99223	0.00053762	1.1435	0.00061957	541.8325332231567	37.56	0.14876	37.56	37.524	37.673	0					14	8	2	0	0	0	0.46236	1	12699	12699		52.167	17.015	1	136060			6045	6024	3089	3115	6162	6162					0.1119857791979939
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.83251953125	2	541.832049	1081.64954	2.0303	0.0011001	-0.99591	-0.00053962	1.0344	0.00056045	541.8314013060592	37.78	0.27901	37.78	37.685	37.964	0					22	9	3	0	0	0	0.15835	1	14800	14800		88.134	26.442	1	823520			6046	6024	3089	3115	6163	6163					0.1119857791979939
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.832275390625	2	541.832049	1081.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.602	1	37.602	37.102	38.102	0								0	0	0	0.36973	1	13455	13455		47.228	24.648	1				6047	6024	3089	3115	6164	6164					0.1119857791979939
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.8330688476562	2	541.832049	1081.64954	-1.4848	-0.00080453	3.3021	0.0017892	1.8173	0.00098466	541.8341130376486	37.571	0.16407	37.571	37.485	37.649	0					12	8	2	0	0	0	0.26698	1	13442	13442		73.841	41.029	1	66556			6048	6024	3089	3115	6165	6165					0.1119857791979939
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.8323364257812	2	541.832049	1081.64954	2.0495	0.0011105	-0.90146	-0.00048844	1.148	0.00062203	541.8314655282501	37.699	0.30768	37.699	37.596	37.904	0					15	6	3	0	0	0	0.10141	1	14771	14771		99.788	24.745	1	734830			6049	6024	3089	3115	6166	6166					0.1119857791979939
AVQKAIPMYK	10	Unmodified	_AVQKAIPMYK_					0	0	0		ENST00000439215.1_1_1:43369124-43369580:+|nuORF;ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.8289794921875	2	574.828452	1147.64235	0.060391	3.4714E-05	1.3994	0.00080441	1.4598	0.00083912	574.8288787178026	25.062	0.10699	25.062	24.995	25.102	0					5	3	2	0	0	0	0.28036	1	7757	7757		69.628	30.821	1	69289			6050	3699	3090	3116	6167	6167					0.07443522047697115
AVQKAIPMYK	10	Unmodified	_AVQKAIPMYK_					0	0	0		ENST00000439215.1_1_1:43369124-43369580:+|nuORF;ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.828857421875	2	574.828452	1147.64235	1.9191	0.0011031	-1.159	-0.00066621	0.76009	0.00043692	574.8281308387672	25.299	0.27069	25.299	25.188	25.459	0					7	5	2	0	0	0	0.081767	1	8972	8972		98.629	36.522	1	583550			6051	3699	3090	3116	6168	6168					0.07443522047697115
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.8196411132812	2	525.818941	1049.62333	1.3584	0.00071427	0.13586	7.1439E-05	1.4943	0.00078571	525.8190039901885	14.115	0.094038	14.115	14.075	14.169	0					13	4	4	0	0	0	0.014413	1	2854	2854		115.49	30.579	1	575340			6052	2899;6458;5367	3091	3117	6169	6169					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.8193359375	2	525.818941	1049.62333	1.9577	0.0010294	-1.1253	-0.00059172	0.83242	0.0004377	525.8182310527887	14.458	0.41182	14.458	14.378	14.79	0					19	10	4	0	0	0	0.0046931	1	3516	3516		143.37	53.004	1	7133600			6053	2899;6458;5367	3091	3117	6170	6170					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.8201293945312	2	525.818941	1049.62333	0.50444	0.00026524	0.85157	0.00044777	1.356	0.00071301	525.8193268285019	14.123	0.19696	14.123	14.065	14.262	0					20	9	4	0	0	0	0.01776	1	3001	3001		120.31	50.678	1	1020700			6054	2899;6458;5367	3091	3117	6171	6171					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.8819885253906	3	350.88172	1049.62333	-0.82929	-0.00029098	1.0297	0.00036129	0.20036	7.0304E-05	350.8820470532252	14.132	0.10845	14.132	14.083	14.191	0					14	5	3	0	0	0	0.022525	1	3002	3002		117.81	39.547	1	318070			6055	2899;6458;5367	3091	3117	6172	6172					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8190307617188	2	525.818941	1049.62333	1.77	0.00093069	-1.1756	-0.00061813	0.59442	0.00031256	525.818192946486	14.407	0.5295	14.407	14.317	14.846	0					25	11	3	0	0	0	0.0025398	1	3720	3720		155.58	65.215	1	6028600			6056	2899;6458;5367	3091	3117	6173	6173					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8202514648438	2	525.818941	1049.62333	1.1882	0.00062477	0.09815	5.1609E-05	1.2863	0.00067638	525.818857097995	14.187	0.14936	14.187	14.115	14.264	0					18	8	3	0	0	0	0.021035	1	2956	2956		126.24	51.988	1	837670			6057	2899;6458;5367	3091	3117	6174	6174					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.8815002441406	3	350.88172	1049.62333	-0.076104	-2.6704E-05	-0.66356	-0.00023283	-0.73967	-0.00025954	350.8814927954638	14.17	0.095577	14.17	14.115	14.21	0					9	5	2	0	0	0	0.056004	1	2961	2961		93.143	29.609	1	151920			6058	2899;6458;5367	3091	3117	6175	6175					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8197021484375	2	525.818941	1049.62333	-1.2329	-0.00064827	2.1376	0.001124	0.90474	0.00047573	525.81996937756	14.181	0.1272	14.181	14.128	14.255	0					15	7	3	0	0	0	0.031595	1	2953	2953		101.46	33.966	1	605400			6059	2899;6458;5367	3091	3117	6176	6176					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8192749023438	2	525.818941	1049.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.388	1	14.388	13.888	14.888	0								0	0	0	0.0012491	1	3567	3567		132.76	66.329	1				6060	2899;6458;5367	3091	3117	6177	6177					0.10050308748327552
AVQLPARFK	9	Unmodified	_AVQLPARFK_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000485123.1_1_22:21082055-21083755:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3130493164062	2	515.313826	1028.6131	0.028821	1.4852E-05	-0.0655	-3.3753E-05	-0.03668	-1.8902E-05	515.3136733292419	29.104	0.40534	29.104	28.918	29.324	0					22	10	3	0	0	0	0.3269	1	10354	10354		49.442	0	1	402440			6061	7942	3092	3118	6178	6178					0.09993745813744681
AVQLPARFK	9	Unmodified	_AVQLPARFK_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000485123.1_1_22:21082055-21083755:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.8783264160156	3	343.87831	1028.6131	0.50584	0.00017395	-0.49231	-0.00016929	0.013536	4.6549E-06	343.8781939599413	29.094	0.60631	29.094	28.758	29.364	0					26	15	3	0	0	0	0.50858	1	10356	10356		31.53	3.6476	1	318920			6062	7942	3092	3118	6179	6179					0.09993745813744681
AVQLPRATH	9	Unmodified	_AVQLPRATH_					0	0	0		nc|ENSG00000161010|Q6NTE8-3|MRNIP;ENSG00000161010|ENST00000292586|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2896728515625	2	496.785433	991.556313	-2.325	-0.001155	3.5698	0.0017734	1.2448	0.00061841	496.7858848704134	18.993	0.18909	18.993	18.872	19.061	0					8	4	3	0	0	0	0.51817	1	5086	5086		30.504	3.7075	1	217810			6063	5396	3093	3119	6180	6180					0.060196982572165325
AVQMEKKKK	9	Unmodified	_AVQMEKKKK_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3270263671875	2	545.326076	1088.6376	1.926	0.0010503	0.27966	0.00015251	2.2056	0.0012028	545.3259094587593	11.128	0.079287	11.128	11.09	11.169	0					4	2	2	0	0	0	0.022698	1	2219	2219		101.25	10.652	1	217150	+		6064	14129	3094	3120	6181	6181					0.09682637904961666
AVQMEKKKK	9	Unmodified	_AVQMEKKKK_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.8866882324219	3	363.886476	1088.6376	1.3173	0.00047935	-0.62206	-0.00022636	0.69524	0.00025299	363.8862677607899	11.128	0.079287	11.128	11.09	11.169	0					4	2	2	0	0	0	0.24095	1	2220	2220		56.721	7.2795	1	116030	+		6065	14129	3094	3120	6182	6182					0.09682637904961666
AVQMEKKKK	9	Unmodified	_AVQMEKKKK_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.8867492675781	3	363.886476	1088.6376	3.1343	0.0011405	-2.8951	-0.0010535	0.2392	8.7041E-05	363.8856051408282	11.15	0.059069	11.15	11.111	11.17	0					5	3	2	0	0	0	0.41113	1	2140	2140		40.778	0	1	66045	+		6066	14129	3094	3120	6183	6183					0.09682637904961666
AVQNLPTKK	9	Unmodified	_AVQNLPTKK_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.5379333496094	3	333.537953	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.393	1	17.393	16.893	17.893	0								0	0	0	0.3368	1	4899	4899		35.152	9.0886	1				6067	4728	3095	3121	6184	6184					0.09313735714226823
AVQNLPTKK	9	Unmodified	_AVQNLPTKK_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.5378723144531	3	333.537953	997.59203	0.38782	0.00012935	-0.47174	-0.00015734	-0.083917	-2.799E-05	333.5378261379131	17.326	0.16085	17.326	17.217	17.377	0					6	3	2	0	0	0	0.51817	1	5140	5140		45.972	10.82	1	115110			6068	4728	3095	3121	6185	6185					0.09313735714226823
AVQPAPTRK	9	Unmodified	_AVQPAPTRK_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.2873840332031	2	484.287808	966.561064	0.043023	2.0835E-05	-1.1758	-0.0005694	-1.1327	-0.00054857	484.28729095521214	13.892	0.11583	13.892	13.844	13.96	0					10	5	3	0	0	0	0.36892	1	2787	2787		44.377	1.981	1	145380			6069	2585	3096	3122	6186	6186					0.07644582399984756
AVQPAPTRK	9	Unmodified	_AVQPAPTRK_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2875061035156	2	484.287808	966.561064	-0.19731	-9.5553E-05	-0.47747	-0.00023123	-0.67478	-0.00032679	484.2875905532192	14.22	0.20664	14.22	14.132	14.338	0					11	5	3	0	0	0	0.1424	1	3422	3422		69.628	6.3214	1	1023200			6070	2585	3096	3122	6187	6187					0.07644582399984756
AVQPAPTRK	9	Unmodified	_AVQPAPTRK_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2876281738281	2	484.287808	966.561064	-1.2429	-0.00060191	1.0291	0.00049839	-0.21376	-0.00010352	484.2882667445752	13.901	0.10001	13.901	13.856	13.956	0					7	4	2	0	0	0	0.15163	1	2921	2921		67.494	8.7117	1	260590			6071	2585	3096	3122	6188	6188					0.07644582399984756
AVQPAPTRK	9	Unmodified	_AVQPAPTRK_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2880859375	2	484.287808	966.561064	-2.9171	-0.0014127	2.9198	0.001414	0.0026412	1.2791E-06	484.28927976849684	13.95	0.16019	13.95	13.892	14.052	0					8	6	2	0	0	0	0.15163	1	2868	2868		67.494	6.5217	1	393730			6072	2585	3096	3122	6189	6189					0.07644582399984756
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7955932617188	2	522.795466	1043.57638	0.78827	0.00041211	-0.31156	-0.00016288	0.47671	0.00024922	522.7952929207808	27.632	0.29447	27.632	27.423	27.718	0					18	9	3	0	0	0	0.1115	1	8519	8519		76.774	15.802	1	255380			6073	7128	3097	3123	6190	6190					0.056334491971938405
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7955932617188	2	522.795466	1043.57638	0.08618	4.5054E-05	-0.74504	-0.0003895	-0.65886	-0.00034445	522.7951577731758	27.871	0.75807	27.871	27.61	28.368	0					29	18	2	0	0	0	0.071197	1	9775	9775		87.754	18.967	1	1117900			6074	7128	3097	3123	6191	6191					0.056334491971938405
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7958374023438	2	522.795466	1043.57638	0.45002	0.00023527	0.17373	9.0823E-05	0.62375	0.00032609	522.7956387279485	27.622	0.24566	27.622	27.555	27.8	0					17	8	3	0	0	0	0.16002	1	8813	8813		66.429	16.988	1	301320			6075	7128	3097	3123	6192	6192					0.056334491971938405
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7957153320312	2	522.795466	1043.57638	1.7967	0.00093933	-1.392	-0.00072774	0.40473	0.00021159	522.7947928512239	27.855	0.44718	27.855	27.649	28.096	0					24	9	4	0	0	0	0.027316	1	10151	10151		111.65	32.197	1	2137500			6076	7128	3097	3123	6193	6193					0.056334491971938405
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.79638671875	2	522.795466	1043.57638	1.092	0.00057092	-0.50462	-0.00026381	0.58742	0.0003071	522.7952738619572	27.692	0.18039	27.692	27.576	27.756	0					8	4	3	0	0	0	0.03984	1	9091	9091		99.375	28.079	1	109270			6077	7128	3097	3123	6194	6194					0.056334491971938405
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7960205078125	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.672	1	27.672	27.172	28.172	0								0	0	0	0.0082086	1	9083	9083		111.65	32.197	1				6078	7128	3097	3123	6195	6195					0.056334491971938405
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3223876953125	2	529.321848	1056.62914	1.1721	0.00062043	-0.83902	-0.00044411	0.3331	0.00017632	529.3212161083563	21.619	0.6016	21.619	21.506	22.107	0					51	18	5	0	0	0	0.014413	1	5955	5955		131.62	46.455	1	28308000			6079	928	3098	3124	6196	6196					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	353.216796875	3	353.216991	1056.62914	0.42574	0.00015038	-0.74597	-0.00026349	-0.32022	-0.00011311	353.216738591145	21.619	0.34635	21.619	21.506	21.852	0					37	11	5	0	0	0	0.24334	1	5957	5957		91.265	41.232	1	24021000			6080	928	3098	3124	6197	6197					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3223876953125	2	529.321848	1056.62914	2.296	0.0012153	-1.9281	-0.0010206	0.36792	0.00019475	529.3209713934328	21.963	0.99395	21.963	21.823	22.817	0					76	23	5	0	0	0	0.011893	1	7050	7050		136.99	56.534	1	81560000			6081	928	3098	3124	6198	6198					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.21728515625	3	353.216991	1056.62914	0.7079	0.00025004	-1.0848	-0.00038315	-0.37686	-0.00013311	353.21686716255186	21.988	1.793	21.988	21.823	23.616	0					86	42	5	0	0	0	0.076532	1	7051	7051		122.94	55.977	1	63885000			6082	928	3098	3124	6199	6199					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3217163085938	2	529.321848	1056.62914	0.1121	5.9336E-05	-0.05177	-2.7403E-05	0.060327	3.1932E-05	529.3218158447004	21.956	0.31051	21.956	21.854	22.165	0					14	7	3	0	0	0	0.02953	1	7067	7067		109.48	35.223	1	649540			6083	928	3098	3124	6200	6200					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.3232421875	2	529.321848	1056.62914	0.071473	3.7832E-05	-0.23244	-0.00012303	-0.16096	-8.5201E-05	529.321650431238	21.638	1.368	21.638	21.546	22.914	0					102	43	5	0	0	0	0.022698	1	6221	6221		117.53	39.262	1	39724000			6084	928	3098	3124	6201	6201					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.2166442871094	3	353.216991	1056.62914	-0.8525	-0.00030112	0.20204	7.1365E-05	-0.65046	-0.00022975	353.2169768342304	21.67	0.11548	21.67	21.6	21.715	0					6	3	2	0	0	0	0.48389	1	6253	6253		58.23	20.418	1	176440			6085	928	3098	3124	6202	6202					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.3230590820312	2	529.321848	1056.62914	1.7386	0.00092026	-1.8297	-0.0009685	-0.091122	-4.8233E-05	529.3213608244727	21.866	1.5539	21.866	21.658	23.212	0					95	31	6	0	0	0	0.034688	2	7300	7300;7471		104.42	38.958	1	168320000			6086	928	3098	3124	6203;6204	6203					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8244018554688	2	529.321848	1056.62914	1.2269	0.00064942	-1.2374	-0.00065501	-0.010557	-5.5879E-06	529.3210057869393	21.728	1.1426	21.728	21.608	22.75	0					64	26	5	0	0	0	0.035106	2	6318	6318;6486		104.01	35.227	1	44896000			6087	928	3098	3124	6205;6206	6205					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.2169189453125	3	353.216991	1056.62914	-0.08093	-2.8586E-05	-0.15519	-5.4814E-05	-0.23612	-8.34E-05	353.2169407488615	21.728	0.41742	21.728	21.629	22.046	0					25	9	5	0	0	0	0.047855	1	6336	6336		133.99	67.032	1	8109500			6088	928	3098	3124	6207	6207					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.321533203125	2	529.321848	1056.62914	-1.1777	-0.00062338	1.3386	0.00070856	0.16092	8.5179E-05	529.322411471774	21.711	0.45151	21.711	21.623	22.074	0					30	10	5	0	0	0	0.024312	1	6328	6328		114.86	39.815	1	13570000			6089	928	3098	3124	6208	6208					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.21685791015625	3	353.216991	1056.62914	-0.05108	-1.8042E-05	-0.31991	-0.000113	-0.37099	-0.00013104	353.2169101962958	21.848	0.26567	21.848	21.738	22.004	0					14	5	4	0	0	0	0.38666	1	7186	7186		66.962	15.434	1	2113100			6090	928	3098	3124	6209	6209					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3220825195312	2	529.321848	1056.62914	1.63	0.00086281	-1.853	-0.00098085	-0.223	-0.00011804	529.3216859819381	21.879	2.4601	21.879	21.67	24.13	0					103	49	3	0	0	0	0.017741	2	7158	7158;7351		125.71	51.458	1	212100000			6091	928	3098	3124	6210;6211	6210					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.2178039550781	3	353.216991	1056.62914	1.4392	0.00050835	-2.0108	-0.00071023	-0.57156	-0.00020188	353.2167777640116	21.879	1.8141	21.879	21.721	23.535	0					77	36	5	0	0	0	0.10506	1	7177	7177		104.42	40.997	1	112990000			6092	928	3098	3124	6212	6212					0.10309407260001535
AVQSGHVNLK	10	Unmodified	_AVQSGHVNLK_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7966918945312	2	526.795998	1051.57744	0.38693	0.00020384	-0.03807	-2.0055E-05	0.34886	0.00018378	527.2969130535579	18.404	0.058201	18.404	18.36	18.418	0					4	2	2	0	0	0	0.44292	1	4803	4803		51.528	16.376	1	55087			6093	6735	3099	3125	6213	6213					0.05371663566097595
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	586.3562622070312	2	586.355888	1170.69722	0.31505	0.00018473	0.20188	0.00011837	0.51693	0.0003031	586.3559463249192	27.122	0.17323	27.122	27.037	27.211	0					16	6	3	0	0	0	0.0014544	1	8316	8316		133.75	37.087	1	331890			6094	3340	3100	3126	6214	6214					0.11870232119986213
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.35595703125	2	586.355888	1170.69722	0.092906	5.4476E-05	0.3501	0.00020528	0.44301	0.00025976	586.3560703876576	27.375	0.26021	27.375	27.282	27.542	0					17	6	4	0	0	0	5.2658E-05	1	9540	9540		156.16	33.222	1	2558500			6095	3340	3100	3126	6215	6215					0.11870232119986213
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.2398376464844	3	391.239684	1170.69722	-1.2329	-0.00048234	1.1377	0.0004451	-0.095186	-3.7241E-05	391.2401719228838	27.133	0.18176	27.133	27.048	27.229	0					13	6	3	0	0	0	0.45905	1	8603	8603		47.228	6.4495	1	324270			6096	3340	3100	3126	6216	6216					0.11870232119986213
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.35693359375	2	586.355888	1170.69722	0.041525	2.4348E-05	0.27957	0.00016393	0.32109	0.00018827	586.3561523117389	27.142	0.2105	27.142	27.037	27.247	0					18	7	4	0	0	0	0.072845	1	8600	8600		79.07	10.444	1	355630			6097	3340	3100	3126	6217	6217					0.11870232119986213
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2396240234375	3	391.239684	1170.69722	0.34117	0.00013348	-0.56102	-0.00021949	-0.21985	-8.6013E-05	391.23952163552696	27.364	0.36339	27.364	27.254	27.617	0					20	7	4	0	0	0	0.20322	1	9914	9914		73.9	20.888	1	6434100			6098	3340	3100	3126	6218	6218					0.11870232119986213
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.3562622070312	2	586.355888	1170.69722	-0.21843	-0.00012808	0.75678	0.00044374	0.53834	0.00031566	586.3563890990372	27.347	0.26633	27.347	27.287	27.554	0					14	5	4	0	0	0	6.9661E-05	1	9906	9906		144.55	42.488	1	1883100			6099	3340	3100	3126	6219	6219					0.11870232119986213
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.23980712890625	3	391.239684	1170.69722	-0.15628	-6.1145E-05	0.90176	0.00035281	0.74548	0.00029166	391.2400419601589	27.169	0.21579	27.169	27.09	27.306	0					10	5	3	0	0	0	0.39337	1	8863	8863		52.167	7.5277	1	367650			6100	3340	3100	3126	6220	6220					0.11870232119986213
AVQTAAKELLK	11	Unmodified	_AVQTAAKELLK_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000430206.5_1_2:220251659-220252065:-|nuORF;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.23974609375	3	391.239684	1170.69722	0.47461	0.00018569	-0.72473	-0.00028354	-0.25012	-9.7856E-05	391.23938216486755	27.349	0.373	27.349	27.187	27.56	0					23	7	5	0	0	0	0.27262	1	9763	9763		65.695	17.093	1	5802700			6101	3340	3100	3126	6221	6221					0.11870232119986213
AVQTPNTFVT	10	Unmodified	_AVQTPNTFVT_					0	0	0			REV__ENSG00000020633|ENST00000308873|RUNX3	REV__ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2816162109375	2	539.282389	1076.55022	0.68564	0.00036975	-2.2502	-0.0012135	-1.5645	-0.00084372	539.2811204777208	17.49	0.32107	17.49	17.43	17.751	0					10	6	3	0	0	0	0.49411	1	5065	5065		45.972	1.5951	1	689270	+		6102	12935	3101	3127	6222	6222					0.01501135235048423
AVRFLCPVL	9	Unmodified	_AVRFLCPVL_					0	0	0			REV__PCDHA2|p.R62C|1|0.28|ENSG00000204969|chr5:140795148-140795148|C/T|missense_variant	REV__PCDHA2|p.R62C|1|0.28|ENSG00000204969|chr5:140795148-140795148|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.869384765625	3	339.868646	1016.58411	1.5704	0.00053374	0.65232	0.0002217	2.2227	0.00075544	339.8688639241368	14.6	0.21994	14.6	14.491	14.711	0					8	4	3	0	0	0	0.61124	1	3682	3682		20.947	2.6225	1	1128200	+		6103	21343	3102	3128	6223	6223					0.07647885193102866
AVRGSELGLL	10	Unmodified	_AVRGSELGLL_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.86944580078125	3	338.869591	1013.58694	-0.69733	-0.0002363	0.34585	0.0001172	-0.35148	-0.00011911	338.86977092109555	15.118	0.11274	15.118	15.051	15.164	0					9	5	2	0	0	0	0.63073	1	3375	3375		28.081	2.0181	1	157220	+		6104	14529	3103	3129	6224	6224					0.08069431851606623
AVRKRKPF	8	Unmodified	_AVRKRKPF_					0	0	0			REV__ENST00000586934.5_1_19:5623180-5651054:+|nuORF	REV__ENST00000586934.5_1_19:5623180-5651054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.550048828125	3	334.550416	1000.62942	-0.70264	-0.00023507	-0.74265	-0.00024846	-1.4453	-0.00048353	334.550165900564	18.218	0.11708	18.218	18.143	18.26	0					7	4	2	0	0	0	0.79882	1	4717	4717		19.36	19.36	1	176920	+		6105	20488	3104	3130	6225	6225					0.12912871770504353
AVRKVMRR	8	Unmodified	_AVRKVMRR_					0	0	0		ENSG00000197591|ENST00000355784|OR11L1	ENSG00000197591|ENST00000355784|OR11L1	ENSG00000197591|ENST00000355784|OR11L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.2147216796875	3	339.215039	1014.62329	-0.70239	-0.00023826	-0.14839	-5.0337E-05	-0.85078	-0.0002886	339.2149831760891	33.943	0.35271	33.943	33.835	34.188	0					34	14	4	0	0	0	0.79719	1	11406	11406		18.324	18.324	1	887420			6106	7477	3105	3131	6226	6226					0.11656030267340611
AVRRARPD	8	Unmodified	_AVRRARPD_					0	0	0		ENST00000529014.5_1_11:10880102-10880318:+|nuORF	ENST00000529014.5_1_11:10880102-10880318:+|nuORF	ENST00000529014.5_1_11:10880102-10880318:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7763977050781	2	470.7754	939.536246	2.5042	0.0011789	-2.8685	-0.0013504	-0.36429	-0.0001715	470.77535094560545	32.849	0.45652	32.849	32.59	33.046	0					28	9	5	0	0	0	0.64096	1	12410	12410		42.474	1.9018	1	1312000			6107	10406	3106	3132	6227	6227					0.0640594731727333
AVRRHSRI	8	Unmodified	_AVRRHSRI_					0	0	0		CNTNAP1|p.G828Afs*57|1|0.19|ENSG00000108797|chr17:42691939-42691939|G/-|frameshift_variant;ENSG00000108797|ENST00000264638|CNTNAP1	CNTNAP1|p.G828Afs*57|1|0.19|ENSG00000108797|chr17:42691939-42691939|G/-|frameshift_variant	CNTNAP1|p.G828Afs*57|1|0.19|ENSG00000108797|chr17:42691939-42691939|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.2062683105469	3	332.20542	993.59443	1.4987	0.00049787	0.8985	0.00029849	2.3972	0.00079636	332.20572910248	16.809	0.20041	16.809	16.712	16.913	0					11	4	4	0	0	0	0.76283	1	4889	4889		25.45	1.2474	1	1144800			6108	580	3107	3133	6228	6228					0.09737628962568579
AVRTQRRR	8	Unmodified	_AVRTQRRR_					0	0	0		ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.21697998046875	3	348.216207	1041.62679	3.6297	0.0012639	-1.0839	-0.00037745	2.5458	0.00088647	348.2157536073669	25.779	0.16542	25.779	25.667	25.832	0					6	3	2	0	0	0	0.79567	1	8039	8039		17.365	17.365	1	76058			6109	3819	3108	3134	6229	6229					0.1076441636553227
AVSARLLN	8	Unmodified	_AVSARLLN_					0	0	0		ENST00000601800.5_1_19:49982251-49989456:+|nuORF	ENST00000601800.5_1_19:49982251-49989456:+|nuORF	ENST00000601800.5_1_19:49982251-49989456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2558898925781	2	422.255977	842.497401	0.99927	0.00042195	-1.5591	-0.00065835	-0.55987	-0.00023641	422.2554506236672	25.306	0.40021	25.306	25.195	25.595	0					33	9	5	0	0	0	0.29286	1	8633	8633		84.916	2.6105	1	5010600			6110	11039	3109	3135	6230	6230					0.06985221962895594
AVSAVVHEY	9	Unmodified	_AVSAVVHEY_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7507019042969	2	487.750724	973.486896	0.73713	0.00035953	-0.35569	-0.00017349	0.38144	0.00018605	487.75064739212877	28.646	0.2536	28.646	28.564	28.818	0					17	6	4	0	0	0	0.055856	1	10155	10155		93.195	16.421	1	851640			6111	1293	3110	3136	6231	6231					-0.0009080548219344564
AVSAVVHEY	9	Unmodified	_AVSAVVHEY_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.75103759765625	2	487.750724	973.486896	-0.22029	-0.00010745	1.1867	0.00057881	0.96641	0.00047137	487.75120456579384	28.459	0.20787	28.459	28.363	28.571	0					10	5	2	0	0	0	0.0792	1	9451	9451		84.916	21.609	1	184750			6112	1293	3110	3136	6232	6232					-0.0009080548219344564
AVSCLLIII	9	Carbamidomethyl (C)	_AVSC(Carbamidomethyl (C))LLIII_	AVSC(1)LLIII		AVSC(53)LLIII		0	1	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5415344238281	3	334.540306	1000.59909	3.011	0.0010073	0.51	0.00017061	3.521	0.0011779	334.54047535071385	15.673	0.36756	15.673	15.513	15.88	0					11	7	2	0	0	0	0.26904	1	4196	4196		53.351	9.2347	1	1980400	+		6113	13569	3111	3137	6233	6233	518				0.09881332270447274
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.2082214355469	3	364.208273	1089.60299	0.09716	3.5386E-05	-0.29503	-0.00010745	-0.19787	-7.2065E-05	364.2081466594313	15.438	0.11552	15.438	15.374	15.49	0					18	5	5	0	0	0	0.53842	1	3348	3348		58.63	58.63	1	4101000			6114	5257;7505	3112	3138	6234	6234					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.8092041015625	2	545.808771	1089.60299	0.41242	0.0002251	-0.18437	-0.00010063	0.22805	0.00012447	545.8086630645396	15.734	0.41729	15.734	15.646	16.064	0					36	10	5	0	0	0	0.00055771	1	4111	4111		139.38	54.221	1	81152000			6115	5257;7505	3112	3138	6235	6235					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.8099365234375	2	545.808771	1089.60299	0.50009	0.00027295	0.20225	0.00011039	0.70234	0.00038334	545.8088006115161	15.486	0.1693	15.486	15.397	15.566	0					16	5	4	0	0	0	0.004134	1	3520	3520		128.35	32.533	1	3494300			6116	5257;7505	3112	3138	6236	6236					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.2080993652344	3	364.208273	1089.60299	-0.96279	-0.00035066	0.58483	0.000213	-0.37796	-0.00013766	364.2084853577866	15.486	0.1693	15.486	15.397	15.566	0					13	5	4	0	0	0	0.35352	1	3531	3531		73.9	35.186	1	1277300			6117	5257;7505	3112	3138	6237	6237					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.8079833984375	2	545.808771	1089.60299	-0.23905	-0.00013048	0.54716	0.00029865	0.30811	0.00016817	545.8090224813311	15.48	0.21572	15.48	15.388	15.604	0					20	7	5	0	0	0	0.0092585	1	3516	3516		125.68	60.217	1	6006600			6118	5257;7505	3112	3138	6238	6238					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8089599609375	2	545.808771	1089.60299	1.899	0.0010365	-1.8836	-0.0010281	0.015424	8.4185E-06	545.8076982627996	15.728	0.51119	15.728	15.617	16.128	0					30	10	5	0	0	0	1.0526E-05	1	4344	4344		176.6	83.455	1	28373000			6119	5257;7505	3112	3138	6239	6239					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8090209960938	2	545.808771	1089.60299	0.33217	0.0001813	-0.57434	-0.00031348	-0.24217	-0.00013218	545.808724309028	15.71	0.41205	15.71	15.6	16.013	0					25	8	4	0	0	0	2.2655E-06	1	4337	4337		188.91	95.769	1	36758000			6120	5257;7505	3112	3138	6240	6240					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3114013671875	2	545.808771	1089.60299	-1.4993	-0.00081833	1.455	0.00079418	-0.044241	-2.4147E-05	545.8094897954215	15.503	0.37368	15.503	15.399	15.772	0					34	13	5	0	0	0	0.00035695	1	3470	3470		141.91	51.31	1	11557000			6121	5257;7505	3112	3138	6241	6241					0.061770932978333803
AVSEHRLSNK	10	Unmodified	_AVSEHRLSNK_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.8101196289062	2	570.809636	1139.60472	0.003481	1.987E-06	0.79917	0.00045618	0.80265	0.00045816	570.8101593599249	14.729	0.13337	14.729	14.643	14.777	0					5	3	2	0	0	0	0.0089743	1	3659	3659		114.86	47.365	1	666970			6122	2322	3113	3139	6242	6242					0.04050147106477198
AVSEHRLSNK	10	Unmodified	_AVSEHRLSNK_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.81005859375	2	570.809636	1139.60472	-1.3744	-0.00078455	2.0998	0.0011986	0.72538	0.00041405	570.8111576383444	14.505	0.066024	14.505	14.463	14.529	0					5	3	2	0	0	0	0.43708	1	3078	3078		40.058	19.111	1	39181			6123	2322	3113	3139	6243	6243					0.04050147106477198
AVSEKKAK	8	Unmodified	_AVSEKKAK_					0	0	0		nc|ENSG00000158887|P25189-2|MPZ;ENSG00000158887|ENST00000533357|MPZ;ENST00000476410.1_1_1:161275668-161275791:-|nuORF	nc|ENSG00000158887|P25189-2|MPZ	nc|ENSG00000158887|P25189-2|MPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.763671875	2	430.763635	859.512717	1.0519	0.00045312	-0.71353	-0.00030736	0.33836	0.00014575	430.7634357363977	14.811	0.049716	14.811	14.786	14.836	0					4	2	2	0	0	0	0.5676	1	3118	3118		53.351	0.41475	1	40152			6124	5290	3114	3140	6244	6244					0.07734088760093982
AVSELILSK	9	Unmodified	_AVSELILSK_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2923889160156	2	480.292225	958.569897	0.032046	1.5392E-05	-0.32385	-0.00015554	-0.2918	-0.00014015	480.2924197086212	34.63	0.14647	34.63	34.586	34.732	0					8	6	2	0	0	0	0.16806	1	11341	11341		65.465	9.9612	1	40349			6125	1663	3115	3141	6245	6245					0.08895511245827947
AVSGALAGGRL	11	Unmodified	_AVSGALAGGRL_					0	0	0			REV__ENST00000409687.4_1_9:139957783-139958401:-|nuORF	REV__ENST00000409687.4_1_9:139957783-139958401:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7872009277344	2	486.285266	970.555979	0.01275	6.2002E-06	-0.42496	-0.00020665	-0.41221	-0.00020045	486.28477572958974	13.522	0.061297	13.522	13.49	13.552	0					6	3	2	0	0	0	0.51875	1	2663	2663		42.864	2.0861	1	44502	+		6126	19001	3116	3142	6246	6246					0.06952278537380607
AVSHAERAL	9	Unmodified	_AVSHAERAL_					0	0	0		ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant;ENSG00000105278|ENST00000262961|ZFR2	ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2593688964844	2	477.261791	952.509028	-2.8333	-0.0013522	-1.9287	-0.00092052	-4.7621	-0.0022728	477.26089405723945	32.886	0.30063	32.886	32.789	33.09	0					25	8	4	0	0	0	0.22377	1	11469	11469		58.782	5.4305	1	1984700			6127	2341	3117	3143	6247	6247					0.030874189862174717
AVSHRQRL	8	Unmodified	_AVSHRQRL_					0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.78460693359375	2	483.783225	965.551896	3.4833	0.0016852	-1.0499	-0.00050792	2.4334	0.0011772	483.7828044329437	18.636	0.12456	18.636	18.572	18.697	0					8	4	3	0	0	0	0.49887	1	4913	4913		60.294	60.294	1	178350			6128	4703	3118	3144	6248	6248					0.06774233834312327
AVSKDEAVML	10	Unmodified	_AVSKDEAVML_					0	0	0		ENST00000498690.1_1_1:211952359-211966533:-|nuORF;ENSG00000123684|ENST00000366997|LPGAT1	ENST00000498690.1_1_1:211952359-211966533:-|nuORF	ENST00000498690.1_1_1:211952359-211966533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.8546447753906	3	354.854842	1061.5427	0.49013	0.00017392	-0.67087	-0.00023806	-0.18074	-6.4138E-05	354.8545696299112	24.652	0.30191	24.652	24.562	24.864	0					17	7	3	0	0	0	0.49411	1	8335	8335		45.972	1.5951	1	454610			6129	3334	3119	3145	6249	6249					0.014386596431222642
AVSKDIANWQK	11	Unmodified	_AVSKDIANWQK_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6;TADA3-PRPF6|1|fusion	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	630.3409423828125	2	630.340769	1258.66699	-0.12769	-8.049E-05	-0.10092	-6.3612E-05	-0.22861	-0.0001441	630.3407967615201	26.602	0.16704	26.602	26.493	26.661	0					9	3	3	0	0	0	0.29048	1	9553	9553		63.694	6.973	1	195760			6130	2095	3120	3146	6250	6250					0.04799873454794579
AVSKEVTRK	9	Unmodified	_AVSKEVTRK_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3074645996094	2	509.306198	1016.59784	-0.51405	-0.00026181	2.1907	0.0011157	1.6767	0.00085394	509.307556728698	13.059	0.073739	13.059	13.019	13.093	0					7	4	2	0	0	0	0.24334	1	2651	2651		56.434	8.7765	1	112980			6131	2868	3121	3147	6251	6251					0.09020834225896124
AVSKEVTRK	9	Unmodified	_AVSKEVTRK_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.873046875	3	339.873224	1016.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.278	1	13.278	12.778	13.778	0								0	0	0	0.28666	1	3196	3196		53.089	22.771	1				6132	2868	3121	3147	6252	6252					0.09020834225896124
AVSKEVTRK	9	Unmodified	_AVSKEVTRK_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.30615234375	2	509.306198	1016.59784	1.168	0.00059489	-1.5533	-0.00079113	-0.38529	-0.00019623	509.3054253011065	13.242	0.20426	13.242	13.144	13.348	0					8	4	3	0	0	0	0.035106	1	3191	3191		104.01	28.97	1	1187500			6133	2868	3121	3147	6253	6253					0.09020834225896124
AVSKEVTRK	9	Unmodified	_AVSKEVTRK_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.8731689453125	3	339.873224	1016.59784	-0.022189	-7.5414E-06	-0.085659	-2.9113E-05	-0.10785	-3.6655E-05	339.87321673763034	13.218	0.11543	13.218	13.159	13.275	0					4	2	2	0	0	0	0.36892	1	3024	3024		59.931	12.273	1	387220			6134	2868	3121	3147	6254	6254					0.09020834225896124
AVSKLYASK	9	Unmodified	_AVSKLYASK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000466032.1_1_2:86754275-86769420:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7845458984375	2	483.784567	965.554582	0.020379	9.8588E-06	-0.84811	-0.0004103	-0.82773	-0.00040044	483.784161716827	18.644	0.12751	18.644	18.568	18.695	0					10	4	3	0	0	0	0.082776	1	4658	4658		83.647	22.675	1	247700			6135	2921	3122	3148	6255	6255					0.07042644448620194
AVSKLYASK	9	Unmodified	_AVSKLYASK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000466032.1_1_2:86754275-86769420:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7846984863281	2	483.784567	965.554582	0.61183	0.00029599	-0.52423	-0.00025362	0.087596	4.2378E-05	483.7842802841343	18.969	0.1184	18.969	18.896	19.015	0					11	3	4	0	0	0	0.0059342	1	5632	5632		154.01	76.694	1	2336500			6136	2921	3122	3148	6256	6256					0.07042644448620194
AVSKLYASK	9	Unmodified	_AVSKLYASK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000466032.1_1_2:86754275-86769420:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.8588562011719	3	322.858804	965.554582	0.53515	0.00017278	-0.61755	-0.00019938	-0.082407	-2.6606E-05	322.85860110684007	18.961	0.15348	18.961	18.889	19.043	0					7	4	2	0	0	0	0.4966	1	5642	5642		47.96	16.43	1	1181700			6137	2921	3122	3148	6257	6257					0.07042644448620194
AVSKLYASK	9	Unmodified	_AVSKLYASK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000466032.1_1_2:86754275-86769420:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7840270996094	2	483.784567	965.554582	-0.096922	-4.6889E-05	-0.68666	-0.0003322	-0.78358	-0.00037908	483.78423177405494	18.892	0.24795	18.892	18.802	19.05	0					10	5	3	0	0	0	0.014648	1	5865	5865		131.12	54.342	1	1831400			6138	2921	3122	3148	6258	6258					0.07042644448620194
AVSKLYASK	9	Unmodified	_AVSKLYASK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000466032.1_1_2:86754275-86769420:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7845153808594	2	483.784567	965.554582	0.2485	0.00012022	-0.7603	-0.00036782	-0.5118	-0.0002476	483.78421197532884	18.739	0.11417	18.739	18.633	18.747	0					7	3	3	0	0	0	0.011893	1	4940	4940		136.99	59.672	1	174870			6139	2921	3122	3148	6259	6259					0.07042644448620194
AVSKLYASK	9	Unmodified	_AVSKLYASK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000466032.1_1_2:86754275-86769420:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7842712402344	2	483.784567	965.554582	-0.26765	-0.00012949	-0.50218	-0.00024295	-0.76983	-0.00037243	483.7844010923313	18.722	0.13174	18.722	18.643	18.775	0					6	3	2	0	0	0	0.19952	1	4952	4952		61.691	12.25	1	279860			6140	2921	3122	3148	6260	6260					0.07042644448620194
AVSKLYASK	9	Unmodified	_AVSKLYASK_					0	0	0		nc|ENSG00000115561|Q9Y3E7-2|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3;ENST00000466032.1_1_2:86754275-86769420:-|nuORF	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	nc|ENSG00000115561|Q9Y3E7-2|CHMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7842712402344	2	483.784567	965.554582	-0.59069	-0.00028577	0.17381	8.4085E-05	-0.41688	-0.00020168	483.78465595647975	18.855	0.24589	18.855	18.768	19.014	0					12	5	4	0	0	0	0.0093724	1	5734	5734		142.36	23.618	1	2233400			6141	2921	3122	3148	6261	6261					0.07042644448620194
AVSKVSTNK	9	Unmodified	_AVSKVSTNK_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.27203369140625	2	467.271824	932.529095	-0.43631	-0.00020388	-0.07453	-3.4826E-05	-0.51084	-0.0002387	467.27190346927006	12.794	0.089487	12.794	12.744	12.833	0					8	4	2	0	0	0	0.095583	1	2453	2453		80.455	25.678	1	83284			6142	6448	3123	3149	6262	6262					0.06013169926200135
AVSKVSTNK	9	Unmodified	_AVSKVSTNK_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2716369628906	2	467.271824	932.529095	-0.65695	-0.00030697	0.17766	8.3016E-05	-0.47928	-0.00022396	467.2719446351466	13.043	0.30939	13.043	12.955	13.265	0					14	8	2	0	0	0	0.0028263	1	2882	2882		169.65	68.192	1	6199100			6143	6448	3123	3149	6263	6263					0.06013169926200135
AVSKVSTNK	9	Unmodified	_AVSKVSTNK_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2713928222656	2	467.271824	932.529095	-1.012	-0.00047289	1.033	0.00048271	0.021014	9.8191E-06	467.2722914751656	12.788	0.065113	12.788	12.758	12.823	0					8	3	3	0	0	0	0.022698	1	2562	2562		117.53	37.813	1	129160			6144	6448	3123	3149	6264	6264					0.06013169926200135
AVSKVSTNK	9	Unmodified	_AVSKVSTNK_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2713623046875	2	467.271824	932.529095	-1.1165	-0.00052172	0.50058	0.0002339	-0.61595	-0.00028782	467.2720400941057	12.799	0.065225	12.799	12.753	12.818	0					6	3	2	0	0	0	0.18416	1	2559	2559		63.534	19.157	1	148240			6145	6448	3123	3149	6265	6265					0.06013169926200135
AVSKVSTNK	9	Unmodified	_AVSKVSTNK_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2716064453125	2	467.271824	932.529095	-1.1449	-0.000535	0.72105	0.00033693	-0.42389	-0.00019807	467.27220082748937	13.049	0.23163	13.049	12.958	13.19	0					10	5	3	0	0	0	0.010427	1	3091	3091		140.11	49.511	1	1937000			6146	6448	3123	3149	6266	6266					0.06013169926200135
AVSKVSTNK	9	Unmodified	_AVSKVSTNK_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2713317871094	2	467.271824	932.529095	-2.2121	-0.0010337	1.9339	0.00090366	-0.2782	-0.00013	467.2726350901409	12.769	0.082835	12.769	12.727	12.81	0					6	4	2	0	0	0	0.082776	1	2500	2500		83.647	6.8004	1	119380			6147	6448	3123	3149	6267	6267					0.06013169926200135
AVSLASRSRK	10	Unmodified	_AVSLASRSRK_					0	0	0			REV__nc|ENSG00000065989|P27815-7|PDE4A	REV__nc|ENSG00000065989|P27815-7|PDE4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.8855895996094	3	358.884123	1073.63054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.553	1	28.553	28.053	29.053	0								0	0	0	0.4044	1	10474	10474		29.17	0	1		+		6148	20933	3124	3150	6268	6268					0.09667041348757266
AVSLKRKMG	9	Unmodified	_AVSLKRKMG_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.5355529785156	3	330.535667	988.58517	3.0053	0.00099337	-3.6068	-0.0011922	-0.60142	-0.00019879	330.53456286952206	15.722	0.21838	15.722	15.613	15.832	0					8	4	3	0	0	0	0.55379	1	4221	4221		26.693	3.6504	1	602140	+		6149	12026	3125	3151	6269	6269					0.09042099562009298
AVSLVPPDLTE	11	Unmodified	_AVSLVPPDLTE_					0	0	0		ENSG00000116183|ENST00000367662|PAPPA2;nc|ENSG00000116183|Q9BXP8-2|PAPPA2	ENSG00000116183|ENST00000367662|PAPPA2	ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.87542724609375	3	380.876411	1139.6074	0.64101	0.00024415	-2.4628	-0.00093802	-1.8218	-0.00069387	380.8751763358166	14.668	0.21916	14.668	14.592	14.811	0					5	4	2	0	0	0	0.60833	1	3705	3705		36.318	3.5671	1	401020			6150	2968	3126	3152	6270	6270					0.04318557720739591
AVSMNVFREED	11	Unmodified	_AVSMNVFREED_					0	0	0		RNF17|p.K610N|1|0.23|ENSG00000132972|chr13:24802452-24802452|A/C|missense_variant	RNF17|p.K610N|1|0.23|ENSG00000132972|chr13:24802452-24802452|A/C|missense_variant	RNF17|p.K610N|1|0.23|ENSG00000132972|chr13:24802452-24802452|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.8684997558594	3	432.86781	1295.5816	0.72929	0.00031568	0.9128	0.00039512	1.6421	0.00071081	432.8682900370164	26.457	0.44895	26.457	26.326	26.775	0					27	10	3	0	0	0	0.70921	1	9143	9143		26.75	2.5179	1	420740			6151	22350	3127	3153	6271	6271					-0.05436659793144827
AVSNSFLAY	9	Unmodified	_AVSNSFLAY_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.24517822265625	2	486.245275	970.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.389	1	47.389	46.889	47.889	0								0	0	0	0.11184	1	18924	18924		68.787	13.283	1				6152	1181	3128	3154	6272	6272					-0.010422078564829462
AVSPDLHITP	10	Unmodified	_AVSPDLHITP_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.5245056152344	3	350.525713	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.976	1	12.976	12.476	13.476	0								0	0	0	0.40063	1	2507	2507		30.318	5.7985	1				6153	11564	3129	3155	6273	6273					0.032974390976505674
AVSQDVLMK	9	Unmodified	_AVSQDVLMK_					0	0	0		ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7676086425781	2	495.76806	989.521567	0.10436	5.1739E-05	-1.2649	-0.00062708	-1.1605	-0.00057534	495.7673711220439	28.798	0.16751	28.798	28.639	28.806	0					6	4	2	0	0	0	0.53064	1	9602	9602		29.17	2.4771	1	58370			6154	3037	3130	3156	6274	6274					0.02638694334268621
AVSQLFLSLQ	10	Unmodified	_AVSQLFLSLQ_					0	0	0		ENST00000420488.5_1_20:30310076-30311747:-|nuORF	ENST00000420488.5_1_20:30310076-30311747:-|nuORF	ENST00000420488.5_1_20:30310076-30311747:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.212158203125	3	369.213246	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.245	1	43.245	42.745	43.745	0								0	0	0	0.4201	1	16332	16332		19.263	1.4295	1				6155	9394	3131	3157	6275	6275					0.06978585165848017
AVSQSKELTK	10	Unmodified	_AVSQSKELTK_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.2081604003906	3	364.208273	1089.60299	0.47674	0.00017363	-0.67717	-0.00024663	-0.20043	-7.3E-05	364.20802381769005	15.734	0.41729	15.734	15.646	16.064	0					23	10	3	0	0	0	0.55603	1	4132	4132		59.931	4.2098	1	7619200			6156	4091	3132	3158	6276	6276					0.061770932978333803
AVSSLIRNK	9	Unmodified	_AVSSLIRNK_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;ENST00000550448.5_1_12:49398244-49398481:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.3006286621094	2	494.300916	986.587279	-0.067016	-3.3126E-05	-0.27366	-0.00013527	-0.34068	-0.0001684	494.30058486994335	21.459	0.20258	21.459	21.377	21.579	0					18	8	3	0	0	0	0.028876	1	5909	5909		110.12	40.492	1	525020			6157	10579	3133	3159	6277	6277					0.09344851571472645
AVSSLIRNK	9	Unmodified	_AVSSLIRNK_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;ENST00000550448.5_1_12:49398244-49398481:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.3009948730469	2	494.300916	986.587279	-0.44898	-0.00022193	0.68269	0.00033746	0.23371	0.00011552	494.30094264488787	21.789	0.30805	21.789	21.682	21.99	0					25	7	5	0	0	0	0.00073892	1	6977	6977		185.55	78.542	1	2037500			6158	10579	3133	3159	6278	6278					0.09344851571472645
AVSSLIRNK	9	Unmodified	_AVSSLIRNK_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;ENST00000550448.5_1_12:49398244-49398481:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.3006591796875	2	494.300916	986.587279	-1.6065	-0.0007941	1.6315	0.00080647	0.025033	1.2374E-05	494.301476281536	21.51	0.19526	21.51	21.404	21.6	0					12	6	3	0	0	0	0.037924	1	6179	6179		101.25	34.823	1	377130			6159	10579	3133	3159	6279	6279					0.09344851571472645
AVSSLIRNK	9	Unmodified	_AVSSLIRNK_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;ENST00000550448.5_1_12:49398244-49398481:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.3006591796875	2	494.300916	986.587279	-0.75325	-0.00037233	0.66478	0.0003286	-0.088471	-4.3731E-05	494.30097316327254	21.7	0.26596	21.7	21.592	21.858	0					15	5	4	0	0	0	0.0080613	1	7222	7222		145.16	54.555	1	2447500			6160	10579	3133	3159	6280	6280					0.09344851571472645
AVSSPLTTVL	10	Unmodified	_AVSSPLTTVL_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.28814697265625	2	494.289682	986.564812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.504	1	46.504	46.004	47.004	0								0	0	0	0.28441	1	18609	18609		53.351	0	1		+		6161	16839	3134	3160	6281	6281					0.0709920738316896
AVSSSAFILCV	11	Carbamidomethyl (C)	_AVSSSAFILC(Carbamidomethyl (C))V_	AVSSSAFILC(1)V		AVSSSAFILC(42)V		0	1	0			REV__ENST00000520931.5_2_5:150409762-150409912:-|nuORF	REV__ENST00000520931.5_2_5:150409762-150409912:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.2987060546875	2	577.299724	1152.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.942	1	13.942	13.442	14.442	0								0	0	0	0.36993	1	3509	3509		42.396	12.078	1		+		6162	19953	3135	3161	6282	6282	702				0.014706350514870792
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.25933837890625	2	477.259871	952.505189	0.0091777	4.3802E-06	-0.99472	-0.00047474	-0.98554	-0.00047036	477.2594875673886	32.863	0.3197	32.863	32.757	33.076	0					35	13	4	0	0	0	0.20551	1	10625	10625		60.972	5.4677	1	2171700			6163	6392	3136	3162	6283	6283					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2592468261719	2	477.259871	952.505189	-0.10454	-4.9895E-05	-1.2645	-0.00060351	-1.3691	-0.00065341	477.25902720898506	32.883	0.23393	32.883	32.773	33.007	0					17	9	3	0	0	0	0.16002	1	10652	10652		66.429	5.4573	1	210170			6164	6392	3136	3162	6284	6284					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2596130371094	2	477.259871	952.505189	-0.33315	-0.000159	-0.56298	-0.00026869	-0.89613	-0.00042768	477.25942155908916	33.116	0.33302	33.116	33.046	33.379	0					21	9	3	0	0	0	0.21263	1	12222	12222		60.118	23.09	1	1037400			6165	6392	3136	3162	6285	6285					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2597961425781	2	477.259871	952.505189	-1.4916	-0.00071186	0.48264	0.00023034	-1.0089	-0.00048152	477.2601797765637	32.907	0.4992	32.907	32.794	33.294	0					52	20	5	0	0	0	0.056004	1	10995	10995		93.143	41.808	1	2551800			6166	6392	3136	3162	6286	6286					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2593688964844	2	477.259871	952.505189	0.64164	0.00030623	-1.1508	-0.00054925	-0.5092	-0.00024302	477.2593277345604	33.101	0.65579	33.101	32.962	33.618	0					39	15	4	0	0	0	0.012231	1	12628	12628		136.27	77.486	1	16114000			6167	6392	3136	3162	6287	6287					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2593994140625	2	477.259871	952.505189	-0.03188	-1.5215E-05	-0.60773	-0.00029005	-0.63961	-0.00030526	477.25952972872363	32.908	0.21502	32.908	32.774	32.99	0					11	5	3	0	0	0	0.10915	1	11485	11485		77.318	31.366	1	282760			6168	6392	3136	3162	6288	6288					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2597961425781	2	477.259871	952.505189	-0.34279	-0.0001636	-0.041948	-2.002E-05	-0.38474	-0.00018362	477.25989248431097	32.891	0.50148	32.891	32.762	33.263	0					34	14	4	0	0	0	0.021961	1	11478	11478		118.74	54.536	1	2871800			6169	6392	3136	3162	6289	6289					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.260009765625	2	477.259871	952.505189	-0.64025	-0.00030556	0.12398	5.917E-05	-0.51627	-0.0002464	477.26010526129517	33.068	0.49419	33.068	32.972	33.466	0					21	10	4	0	0	0	0.026538	1	12540	12540		112.41	46.608	1	2120300			6170	6392	3136	3162	6290	6290					0.027036131681597908
AVSTFAMVK	9	Unmodified	_AVSTFAMVK_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2596435546875	2	477.259871	952.505189	0.82269	0.00039264	-1.1113	-0.00053036	-0.28857	-0.00013772	477.25941620529886	33.099	0.69393	33.099	32.956	33.65	0					35	14	4	0	0	0	0.01873	1	12532	12532		124.08	63.108	1	13397000			6171	6392	3136	3162	6291	6291					0.027036131681597908
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(41)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2574768066406	2	485.257328	968.500103	0.029212	1.4175E-05	-0.067612	-3.2809E-05	-0.0384	-1.8634E-05	485.2572040575307	27.009	0.21049	27.009	26.969	27.18	0					10	7	2	0	0	0	0.41113	1	8284	8284		40.778	10.275	1	64076			6172	6392	3136	3163	6292	6292		262			0.014593093055509598
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(90)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2570495605469	2	485.257328	968.500103	-0.24286	-0.00011785	-1.4832	-0.00071971	-1.726	-0.00083756	485.2566048844616	27.291	0.42264	27.291	27.037	27.46	0					20	10	3	0	0	0	0.063823	1	9523	9523		90.37	16.115	1	610170			6173	6392	3136	3163	6293	6293		262			0.014593093055509598
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(85)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2574462890625	2	485.257328	968.500103	-1.237	-0.00060025	1.2779	0.00062013	0.040959	1.9876E-05	485.2580631672711	27.06	0.24235	27.06	26.963	27.205	0					19	8	3	0	0	0	0.0792	1	8570	8570		84.916	31.564	1	242110			6174	6392	3136	3163	6294	6294		262			0.014593093055509598
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(110)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.257080078125	2	485.257328	968.500103	0.65647	0.00031856	-0.91518	-0.0004441	-0.25872	-0.00012554	485.25681999758206	27.313	0.21833	27.313	27.203	27.422	0					8	4	2	0	0	0	0.032052	1	9872	9872		107.01	57.566	1	1638800			6175	6392	3136	3163	6295	6295		262			0.014593093055509598
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(80)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.25750732421875	2	485.257328	968.500103	-0.25179	-0.00012218	1.1891	0.00057703	0.93734	0.00045485	485.2577757236617	27.132	0.24842	27.132	27.014	27.262	0					10	6	2	0	0	0	0.098791	1	8831	8831		79.713	44.512	1	136950			6176	6392	3136	3163	6296	6296		262			0.014593093055509598
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(99)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2571716308594	2	485.257328	968.500103	-2.9156	-0.0014148	3.0351	0.0014728	0.11954	5.8008E-05	485.25870227759816	27.11	0.20446	27.11	27.003	27.208	0					11	5	3	0	0	0	0.0406	1	8821	8821		98.629	57.851	1	156040			6177	6392	3136	3163	6297	6297		262			0.014593093055509598
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(96)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2571105957031	2	485.257328	968.500103	0.8454	0.00041024	-1.005	-0.00048766	-0.15956	-7.7429E-05	485.2569696789753	27.247	0.27059	27.247	27.137	27.407	0					12	5	3	0	0	0	0.048471	1	9741	9741		95.815	31.608	1	1209500			6178	6392	3136	3163	6298	6298		262			0.014593093055509598
AVSTGQLVSG	10	Unmodified	_AVSTGQLVSG_					0	0	0			REV__ENSG00000105852|ENST00000265627|PON3	REV__ENSG00000105852|ENST00000265627|PON3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.74786376953125	2	459.748182	917.481811	0.88301	0.00040596	-1.7963	-0.00082585	-0.91331	-0.00041989	459.7474534988265	16.039	0.51818	16.039	15.681	16.2	0					17	10	2	0	0	0	0.44601	1	4350	4350		51.193	3.5354	1	355360	+		6179	13799	3137	3164	6299	6299					0.019768906552030785
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2630920410156	2	438.263468	874.512382	0.25635	0.00011235	-1.2785	-0.00056031	-1.0221	-0.00044796	438.26285345331377	26.165	0.17843	26.165	26.086	26.264	0					10	6	2	0	0	0	0.28897	1	7911	7911		51.193	8.3284	1	155430			6180	2218	3138	3165	6300	6300					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2629699707031	2	438.263468	874.512382	-0.28038	-0.00012288	-0.48573	-0.00021288	-0.76611	-0.00033576	438.2631077717673	26.174	0.15005	26.174	26.104	26.254	0					9	5	2	0	0	0	0.15163	1	7918	7918		67.494	19.836	1	74392			6181	2218	3138	3165	6301	6301					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2633056640625	2	438.263468	874.512382	0.60049	0.00026317	-1.046	-0.00045843	-0.44553	-0.00019526	438.263003960968	26.457	0.17956	26.457	26.368	26.547	0					13	4	4	0	0	0	0.082776	1	9121	9121		83.647	21.54	1	1574100			6182	2218	3138	3165	6302	6302					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2633972167969	2	438.263468	874.512382	-0.38493	-0.0001687	0.052256	2.2902E-05	-0.33267	-0.0001458	438.2635046975599	26.448	0.22442	26.448	26.356	26.581	0					11	5	3	0	0	0	0.10506	1	9133	9133		78.264	25.327	1	532960			6183	2218	3138	3165	6303	6303					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.26318359375	2	438.263468	874.512382	-0.96548	-0.00042314	0.3951	0.00017316	-0.57038	-0.00024998	438.2635734182069	26.177	0.19932	26.177	26.086	26.286	0					13	6	3	0	0	0	0.30841	1	8182	8182		49.536	10.283	1	387930			6184	2218	3138	3165	6304	6304					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.26318359375	2	438.263468	874.512382	0.68093	0.00029843	-1.2871	-0.00056408	-0.60615	-0.00026566	438.2628782370194	26.418	0.26808	26.418	26.309	26.577	0					9	5	2	0	0	0	0.037712	1	9464	9464		101.46	29.582	1	1725900			6185	2218	3138	3165	6305	6305					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.26318359375	2	438.263468	874.512382	-0.6113	-0.00026791	-0.13109	-5.7452E-05	-0.74239	-0.00032536	438.2634009921198	26.251	0.13751	26.251	26.165	26.302	0					8	3	3	0	0	0	0.095583	1	8417	8417		80.455	27.103	1	277970			6186	2218	3138	3165	6306	6306					0.07010669040244011
AVSVQGAGV	9	Unmodified	_AVSVQGAGV_					0	0	0			REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	263.148681640625	3	263.148466	786.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.122	1	45.122	44.622	45.622	0								0	0	0	0.36766	1	17494	17494		14.865	0	1		+		6187	13858	3139	3166	6307	6307					0.021812538005860915
AVSVVPAG	8	Unmodified	_AVSVVPAG_					0	0	0		ENST00000291672.5_1_21:47602711-47602843:-|nuORF	ENST00000291672.5_1_21:47602711-47602843:-|nuORF	ENST00000291672.5_1_21:47602711-47602843:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.2068176269531	2	350.205421	698.39629	3.6238	0.0012691	0.35698	0.00012502	3.9808	0.0013941	350.2054623495841	31.14	0.53363	31.14	31.039	31.573	0					38	20	4	0	0	0	0.78431	1	10465	10465		10.185	0	1	1282000			6188	8438	3140	3167	6308	6308					0.035027702601951205
AVSYVRVVT	9	Unmodified	_AVSYVRVVT_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2896728515625	2	497.290017	992.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.185	1	19.185	18.685	19.685	0								0	0	0	0.3119	1	6022	6022		32.812	2.3088	1				6189	11803	3141	3168	6309	6309					0.06890046822900331
AVTASWVVR	9	Unmodified	_AVTASWVVR_					0	0	0		ENST00000401088.8_1_1:16721635-16721806:+|nuORF	ENST00000401088.8_1_1:16721635-16721806:+|nuORF	ENST00000401088.8_1_1:16721635-16721806:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.1907653808594	3	330.190665	987.550165	0.54551	0.00018012	-0.39623	-0.00013083	0.14928	4.929E-05	330.1905762309849	22.986	1.0096	22.986	22.237	23.246	0					41	20	3	0	0	0	0.56424	1	7846	7846		25.574	1.0549	1	324080			6190	9251	3142	3169	6310	6310					0.05589180025708629
AVTCSLTGTKP	11	Carbamidomethyl (C)	_AVTC(Carbamidomethyl (C))SLTGTKP_	AVTC(1)SLTGTKP		AVTC(41)SLTGTKP		0	1	0			REV__nc|ENSG00000106991|P17813-2|ENG	REV__nc|ENSG00000106991|P17813-2|ENG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.8656005859375	3	378.865629	1133.57506	0.23186	8.7842E-05	-0.83112	-0.00031488	-0.59927	-0.00022704	378.865167152038	23.054	0.41757	23.054	22.961	23.378	0					10	8	2	0	0	0	0.54316	1	7889	7889		41.08	9.4458	1	76757	+		6191	13842	3143	3170	6311	6311	524				0.013614470461106976
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7519836425781	2	482.250034	962.485516	0.046006	2.2187E-05	-0.77519	-0.00037384	-0.72918	-0.00035165	482.2498142439318	30.681	0.29319	30.681	30.592	30.886	0					33	12	4	0	0	0	0.13726	1	9778	9778		70.816	14.095	1	1065400			6192	5451	3144	3171	6312	6312					0.0027723715739966792
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2497253417969	2	482.250034	962.485516	0.56474	0.00027234	-1.3965	-0.00067347	-0.83177	-0.00040112	482.24951107457747	30.942	0.42881	30.942	30.835	31.264	0					37	10	5	0	0	0	0.032383	1	11191	11191		106.68	23.933	1	7080600			6193	5451	3144	3171	6313	6313					0.0027723715739966792
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2499084472656	2	482.250034	962.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.741	1	30.741	30.241	31.241	0								0	0	0	0.095784	1	10125	10125		72.879	17.375	1				6194	5451	3144	3171	6314	6314					0.0027723715739966792
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2496032714844	2	482.250034	962.485516	-0.1028	-4.9578E-05	2.1759	0.0010493	2.0731	0.00099973	482.24963898765594	30.942	0.2813	30.942	30.827	31.109	0					13	6	3	0	0	0	0.22823	2	11637	11595;11637		58.246	5.2411	1	378650			6195	5451	3144	3171	6315;6316	6316					0.0027723715739966792
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.24969482421875	2	482.250034	962.485516	0.69026	0.00033288	-0.27243	-0.00013138	0.41783	0.0002015	482.25012171388283	30.941	0.58053	30.941	30.725	31.305	0					29	13	4	0	0	0	0.047855	1	11605	11605		96.034	24.156	1	4396400			6196	5451	3144	3171	6317	6317					0.0027723715739966792
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2497253417969	2	482.250034	962.485516	0.16565	7.9884E-05	-0.41363	-0.00019947	-0.24798	-0.00011959	482.24983211274275	30.719	0.33811	30.719	30.594	30.932	0					17	9	3	0	0	0	0.076532	1	10480	10480		85.862	24.89	1	458190			6197	5451	3144	3171	6318	6318					0.0027723715739966792
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2497253417969	2	482.250034	962.485516	-0.28234	-0.00013616	-0.6429	-0.00031004	-0.92524	-0.0004462	482.2499402419218	30.729	0.33763	30.729	30.621	30.958	0					27	9	5	0	0	0	0.0097668	1	10491	10491		141.52	53.766	1	1087900			6198	5451	3144	3171	6319	6319					0.0027723715739966792
AVTDAIMSR	9	Unmodified	_AVTDAIMSR_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2500915527344	2	482.250034	962.485516	-0.61437	-0.00029628	-0.043784	-2.1115E-05	-0.65815	-0.00031739	482.2500433103273	30.89	0.60559	30.89	30.78	31.386	0					31	12	4	0	0	0	0.0076184	1	11472	11472		146.79	53.642	1	6442800			6199	5451	3144	3171	6320	6320					0.0027723715739966792
AVTDQTVSK	9	Unmodified	_AVTDQTVSK_					0	0	0		COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant;ENSG00000121058|ENST00000240316|COIL	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7530822753906	2	474.753464	947.492375	0.30147	0.00014312	-1.1911	-0.00056546	-0.88959	-0.00042233	474.75302855090615	17.738	0.42921	17.738	17.579	18.009	0					19	10	3	0	0	0	0.079477	1	5054	5054		84.817	17.324	1	596920			6200	591	3145	3172	6321	6321					0.01652873309626557
AVTDQTVSK	9	Unmodified	_AVTDQTVSK_					0	0	0		COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant;ENSG00000121058|ENST00000240316|COIL	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7532653808594	2	474.753464	947.492375	-0.12039	-5.7154E-05	-0.46795	-0.00022216	-0.58834	-0.00027932	474.7533618143655	17.704	0.26979	17.704	17.6	17.87	0					11	5	3	0	0	0	0.02429	1	5296	5296		114.89	43.599	1	250340			6201	591	3145	3172	6322	6322					0.01652873309626557
AVTDQTVSK	9	Unmodified	_AVTDQTVSK_					0	0	0		COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant;ENSG00000121058|ENST00000240316|COIL	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.75341796875	2	474.753464	947.492375	-0.099991	-4.7471E-05	0.44321	0.00021041	0.34322	0.00016294	474.7536664376636	17.488	0.1059	17.488	17.42	17.526	0					5	3	2	0	0	0	0.15558	1	4376	4376		66.962	10.528	1	48921			6202	591	3145	3172	6323	6323					0.01652873309626557
AVTDQTVSK	9	Unmodified	_AVTDQTVSK_					0	0	0		COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant;ENSG00000121058|ENST00000240316|COIL	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7533874511719	2	474.753464	947.492375	-0.6028	-0.00028618	-0.32975	-0.00015655	-0.93255	-0.00044273	474.75367888545685	17.691	0.36668	17.691	17.58	17.947	0					15	7	3	0	0	0	0.037712	1	5142	5142		101.46	40.488	1	440760			6203	591	3145	3172	6324	6324					0.01652873309626557
AVTDVEATR	9	Unmodified	_AVTDVEATR_					0	0	0		ENST00000473373.1_1_20:34214440-34214716:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1	ENST00000473373.1_1_20:34214440-34214716:-|nuORF	ENST00000473373.1_1_20:34214440-34214716:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2508850097656	2	481.251089	960.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.609	1	21.609	21.109	22.109	0								0	0	0	0.2591	1	6230	6230		42.396	3.1433	1				6204	7806	3146	3173	6325	6325					0.005799891668630153
AVTEYIQRK	9	Unmodified	_AVTEYIQRK_					0	0	0		FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.3126831054688	2	554.31148	1106.60841	1.3127	0.00072762	-0.16304	-9.0376E-05	1.1496	0.00063724	554.3112485852926	22.778	0.099537	22.778	22.713	22.812	0					5	3	2	0	0	0	0.19605	1	6499	6499		62.107	22.855	1	89016			6205	5766	3147	3174	6326	6326					0.05936816880330298
AVTEYIQRK	9	Unmodified	_AVTEYIQRK_					0	0	0		FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.3125	2	554.31148	1106.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.113	1	23.113	22.613	23.613	0								0	0	0	0.0095889	1	7606	7606		110.12	48.012	1				6206	5766	3147	3174	6327	6327					0.05936816880330298
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7740478515625	2	484.7742	967.533846	-0.0015669	-7.5961E-07	-0.41014	-0.00019883	-0.41171	-0.00019958	484.7739433524884	15.691	0.28147	15.691	15.624	15.905	0					30	12	4	0	0	0	0.00022968	1	3445	3445		190.62	77.211	1	4006700			6207	7505	3148	3175	6328	6328					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.77392578125	2	484.7742	967.533846	0.33985	0.00016475	-1.1746	-0.00056943	-0.83479	-0.00040469	484.77355253803387	15.999	0.27132	15.999	15.909	16.18	0					14	6	3	0	0	0	5.5375E-08	1	4238	4238		209.21	72.942	1	6134000			6208	7505	3148	3175	6329	6329					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7737121582031	2	484.7742	967.533846	0.64212	0.00031128	-0.40325	-0.00019548	0.23887	0.0001158	484.7743404163551	15.984	0.56684	15.984	15.897	16.464	0					32	13	3	0	0	0	0.001056	1	4236	4236		182.39	46.123	1	42634000			6209	7505	3148	3175	6330	6330					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	323.5186462402344	3	323.518559	967.533846	0.53517	0.00017314	-0.34944	-0.00011305	0.18573	6.0087E-05	323.5184165631092	16.012	0.39249	16.012	15.926	16.318	0					22	9	4	0	0	0	0.082776	1	4242	4242		90.149	26.722	1	4646200			6210	7505	3148	3175	6331	6331					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7751159667969	2	484.7742	967.533846	-0.092974	-4.5071E-05	1.1504	0.0005577	1.0575	0.00051263	484.7750711524359	15.937	0.76257	15.937	15.834	16.596	0					35	15	4	0	0	0	0.0028263	1	4466	4466		169.65	45.572	1	38922000			6211	7505	3148	3175	6332	6332					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.77392578125	2	484.7742	967.533846	0.30513	0.00014792	-0.75844	-0.00036767	-0.45331	-0.00021975	484.77379477064585	15.736	0.28304	15.736	15.678	15.961	0					31	11	4	0	0	0	0.0051572	1	3594	3594		157.34	3.2265	1	4210900			6212	7505	3148	3175	6333	6333					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7740173339844	2	484.7742	967.533846	-0.25607	-0.00012414	-0.23085	-0.00011191	-0.48692	-0.00023605	484.7740930750685	15.752	0.17896	15.752	15.671	15.85	0					19	7	4	0	0	0	0.001056	1	3591	3591		182.39	60.215	1	1066900			6213	7505	3148	3175	6334	6334					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7738952636719	2	484.7742	967.533846	-0.57573	-0.0002791	1.7585	0.00085247	1.1828	0.00057337	484.77513282435984	15.956	1.4103	15.956	15.849	17.259	0					48	28	4	0	0	0	5.5375E-08	1	4305	4305		209.21	85.13	1	35711000			6214	7505	3148	3175	6335	6335					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7740173339844	2	484.7742	967.533846	0.8536	0.0004138	-1.5254	-0.00073947	-0.6718	-0.00032567	484.77362872910794	15.939	0.47033	15.939	15.88	16.351	0					19	9	4	0	0	0	0.0028263	1	4321	4321		169.65	70.277	1	14426000			6215	7505	3148	3175	6336	6336					0.04878054068944948
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.77197265625	2	492.771657	983.528761	-0.155	-7.6377E-05	-0.29775	-0.00014672	-0.45275	-0.0002231	492.77163441950256	14.927	0.37399	14.927	14.841	15.215	0					35	15	5	0	0	0	0.0043467	1	3140	3140		160.82	79.297	1	7917000			6216	5257	3149	3176	6337	6337					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7713928222656	2	492.771657	983.528761	0.78385	0.00038626	-0.47401	-0.00023358	0.30984	0.00015268	492.7715467552301	15.204	0.47728	15.204	15.068	15.546	0					37	11	5	0	0	0	0.00014666	1	3867	3867		191.45	68.241	1	46035000			6217	5257	3149	3176	6338	6338					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.27276611328125	2	492.771657	983.528761	-0.054419	-2.6816E-05	0.28652	0.00014119	0.2321	0.00011437	492.7719476024757	15.156	0.80369	15.156	15.045	15.849	0					36	16	5	0	0	0	0.0093724	1	4078	4078		142.36	51.096	1	18765000			6218	5257	3149	3176	6339	6339					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7713928222656	2	492.771657	983.528761	0.6064	0.00029882	-0.82851	-0.00040827	-0.22211	-0.00010945	492.77143365980737	15.187	0.45532	15.187	15.079	15.534	0					32	9	6	0	0	0	1.9006E-08	1	4088	4088		218.58	106.47	1	26907000			6219	5257	3149	3176	6340	6340					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	328.85015869140625	3	328.850197	983.528761	0.54835	0.00018032	-0.65253	-0.00021458	-0.10418	-3.426E-05	328.8499780442977	15.172	0.26047	15.172	15.062	15.322	0					14	5	4	0	0	0	0.47473	1	4103	4103		50.034	27.472	1	3208100			6220	5257	3149	3176	6341	6341					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7714538574219	2	492.771657	983.528761	0.37437	0.00018448	-0.74573	-0.00036748	-0.37136	-0.000183	492.77125431447325	15.004	0.39549	15.004	14.934	15.33	0					30	15	4	0	0	0	0.0014418	1	3272	3272		178.55	66.44	1	4747400			6221	5257	3149	3176	6342	6342					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7716064453125	2	492.771657	983.528761	-0.013494	-6.6492E-06	-0.34607	-0.00017053	-0.35956	-0.00017718	492.7714761156041	15.015	0.4572	15.015	14.929	15.386	0					33	17	3	0	0	0	0.0034376	1	3270	3270		166.07	81.156	1	5597800			6222	5257	3149	3176	6343	6343					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.77227783203125	2	492.771657	983.528761	-2.6202	-0.0012912	3.6249	0.0017863	1.0047	0.00049507	492.7734144352023	15.01	0.08474	15.01	14.959	15.043	0					5	3	2	0	0	0	0.47473	1	3286	3286		35.152	5.982	1	135390			6223	5257	3149	3176	6344	6344					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.771484375	2	492.771657	983.528761	-0.60002	-0.00029567	0.9257	0.00045616	0.32569	0.00016049	492.77226170453645	15.17	0.85294	15.17	15.012	15.865	0					45	17	4	0	0	0	0.0014418	1	3926	3926		178.55	77.088	1	25112000			6224	5257	3149	3176	6345	6345					0.03633750206336117
AVTQIHLL	8	Unmodified	_AVTQIHLL_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.7744140625	2	447.774003	893.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.566	1	30.566	30.066	31.066	0								0	0	0	1.7419	1	9756	9756		37.159	0	1				6225	1511	3150	3177	6346	6346					0.0824267913977792
AVTRSRAKK	9	Unmodified	_AVTRSRAKK_					0	0	0			REV__ENST00000550373.2_1_12:53937026-53937696:-|nuORF	REV__ENST00000550373.2_1_12:53937026-53937696:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.82135009765625	2	508.819807	1015.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.973	1	38.973	38.473	39.473	0								0	0	0	0.11963	1	14823	14823		51.193	6.8155	1		+		6226	20194	3151	3178	6347	6347					0.117873625569473
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7950134277344	2	486.795466	971.57638	1.2369	0.00060209	-1.3222	-0.00064366	-0.085377	-4.1561E-05	486.79480784911743	15.702	0.11884	15.702	15.633	15.751	0					9	5	2	0	0	0	0.16806	1	3464	3464		65.465	12.529	1	146820			6227	9194	3152	3179	6348	6348					0.08945449197187827
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.8659362792969	3	324.86607	971.57638	0.2886	9.3756E-05	-0.57298	-0.00018614	-0.28438	-9.2386E-05	324.8658968810879	15.706	0.14172	15.706	15.617	15.759	0					16	6	3	0	0	0	0.30951	1	3466	3466		65.465	38.418	1	636230			6228	9194	3152	3179	6349	6349					0.08945449197187827
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.296875	2	486.795466	971.57638	-0.08545	-4.1597E-05	-0.76587	-0.00037282	-0.85132	-0.00041442	486.79513005050694	15.987	0.66383	15.987	15.834	16.497	0					23	13	2	0	0	0	0.13109	1	4468	4468		72.243	14.013	1	20964000			6229	9194	3152	3179	6350	6350					0.08945449197187827
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.79522705078125	2	486.795466	971.57638	-0.54481	-0.00026521	0.40885	0.00019903	-0.13596	-6.6186E-05	486.79566645934943	15.956	0.56916	15.956	15.849	16.418	0					26	11	4	0	0	0	0.076532	1	4307	4307		85.862	8.5442	1	21963000			6230	9194	3152	3179	6351	6351					0.08945449197187827
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.8661193847656	3	324.86607	971.57638	2.9967	0.00097353	-2.5776	-0.00083739	0.41906	0.00013614	324.8652505745752	15.971	0.26566	15.971	15.815	16.08	0					11	5	3	0	0	0	0.41113	1	4337	4337		56.434	24.8	1	3442400			6231	9194	3152	3179	6352	6352					0.08945449197187827
AVTSGVATK	9	Unmodified	_AVTSGVATK_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.2396545410156	2	417.239993	832.465432	0.51001	0.0002128	0.24647	0.00010284	0.75648	0.00031563	417.2401112926666	16.876	0.13898	16.876	16.801	16.94	0					13	6	3	0	0	0	0.04067	1	3915	3915		98.582	34.375	1	215700			6232	7986	3153	3180	6353	6353					0.042498094890902394
AVTSGVATK	9	Unmodified	_AVTSGVATK_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.2403564453125	2	417.239993	832.465432	3.4064	0.0014213	-2.992	-0.0012484	0.41436	0.00017289	417.23871331841167	16.931	0.098969	16.931	16.856	16.955	0					7	4	2	0	0	0	0.51991	1	4145	4145		30.318	7.2752	1	90724			6233	7986	3153	3180	6354	6354					0.042498094890902394
AVTSGVATK	9	Unmodified	_AVTSGVATK_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.2398681640625	2	417.239993	832.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.142	1	17.142	16.642	17.642	0								0	0	0	0.03526	1	5039	5039		93.143	34.361	1				6234	7986	3153	3180	6355	6355					0.042498094890902394
AVTSGVATK	9	Unmodified	_AVTSGVATK_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.2403869628906	2	417.239993	832.465432	0.09279	3.8716E-05	0.7063	0.00029469	0.79909	0.00033341	417.24026954551897	16.952	0.13217	16.952	16.859	16.991	0					5	3	2	0	0	0	0.085655	1	4118	4118		82.75	33.309	1	212540			6235	7986	3153	3180	6356	6356					0.042498094890902394
AVTSGVATK	9	Unmodified	_AVTSGVATK_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.2402648925781	2	417.239993	832.465432	-0.054001	-2.2531E-05	0.77215	0.00032217	0.71815	0.00029964	417.2402314150383	16.935	0.27356	16.935	16.769	17.043	0					11	7	3	0	0	0	0.087861	1	4128	4128		82.241	13.454	1	328570			6236	7986	3153	3180	6357	6357					0.042498094890902394
AVTSGVATK	9	Unmodified	_AVTSGVATK_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.23980712890625	2	417.239993	832.465432	-0.31257	-0.00013042	-0.18506	-7.7216E-05	-0.49763	-0.00020763	417.23992008543405	17.098	0.36977	17.098	16.94	17.31	0					16	7	4	0	0	0	0.020674	1	4879	4879		120.87	38.628	1	1687400			6237	7986	3153	3180	6358	6358					0.042498094890902394
AVTSRRRR	8	Unmodified	_AVTSRRRR_					0	0	0			REV__ENST00000329759.5_1_3:194408823-194409108:+|nuORF	REV__ENST00000329759.5_1_3:194408823-194409108:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5415344238281	3	334.540691	1000.60024	1.6227	0.00054285	0.78949	0.00026412	2.4122	0.00080697	334.54102101258815	15.69	0.26969	15.69	15.579	15.849	0					11	5	3	0	0	0	0.79719	1	4204	4204		18.324	18.324	1	545520	+		6238	18375	3154	3181	6359	6359					0.09996727474231193
AVTTKSVAAAV	11	Unmodified	_AVTTKSVAAAV_					0	0	0			REV__SLC25A31|p.A37T|1|0.17|ENSG00000151475|chr4:127730654-127730654|G/A|missense_variant	REV__SLC25A31|p.A37T|1|0.17|ENSG00000151475|chr4:127730654-127730654|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.3006286621094	2	509.300581	1016.58661	0.92857	0.00047292	-1.0645	-0.00054218	-0.13598	-6.9256E-05	509.30010134257935	19.37	0.28381	19.37	19.169	19.453	0					10	6	2	0	0	0	0.35529	1	5860	5860		56.434	1.7114	1	183360	+		6239	21528	3155	3182	6360	6360					0.07898012131749965
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7763366699219	2	464.776742	927.538931	0.084573	3.9308E-05	-1.4805	-0.00068809	-1.3959	-0.00064878	464.7762965134321	22.055	0.15821	22.055	21.915	22.073	0					7	4	2	0	0	0	0.087861	1	6174	6174		82.241	38.124	1	62394			6240	4919	3156	3183	6361	6361					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.77618408203125	2	464.776742	927.538931	-0.44043	-0.0002047	-0.37617	-0.00017484	-0.8166	-0.00037954	464.776527710483	22.059	0.22158	22.059	21.906	22.127	0					9	6	2	0	0	0	0.25716	1	6186	6186		54.776	5.3348	1	104090			6241	4919	3156	3183	6362	6362					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7763977050781	2	464.776742	927.538931	0.54437	0.00025301	-1.2243	-0.00056901	-0.67989	-0.000316	464.7761189952287	22.39	0.3199	22.39	22.165	22.485	0					13	7	2	0	0	0	0.07136	1	7280	7280		87.696	29.467	1	411730			6242	4919	3156	3183	6363	6363					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.77655029296875	2	464.776742	927.538931	-0.77533	-0.00036036	-0.26088	-0.00012125	-1.0362	-0.00048161	464.77670465329595	22.074	0.28542	22.074	21.92	22.206	0					16	9	2	0	0	0	0.15163	1	6420	6420		67.494	28.241	1	243250			6243	4919	3156	3183	6364	6364					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7763366699219	2	464.776742	927.538931	0.68441	0.0003181	-1.173	-0.00054518	-0.48859	-0.00022709	464.7761959371459	22.261	0.46172	22.261	21.955	22.417	0					18	9	3	0	0	0	0.021961	1	7522	7522		118.74	41.896	1	1213700			6244	4919	3156	3183	6365	6365					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7764892578125	2	464.776742	927.538931	-2.3372	-0.0010863	1.4758	0.00068593	-0.86142	-0.00040037	464.7776530262217	22.104	0.22819	22.104	21.973	22.202	0					10	5	2	0	0	0	0.0406	1	6520	6520		98.629	24.113	1	223610			6245	4919	3156	3183	6366	6366					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.77630615234375	2	464.776742	927.538931	0.70679	0.0003285	-1.0525	-0.00048919	-0.34575	-0.00016069	464.77648027782743	22.228	0.51563	22.228	21.871	22.387	0					25	10	4	0	0	0	0.023928	1	7377	7377		115.49	60.718	1	926820			6246	4919	3156	3183	6367	6367					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7763366699219	2	464.776742	927.538931	2.61	0.0012131	-3.3369	-0.0015509	-0.72692	-0.00033785	464.7752243984616	22.226	1.4668	22.226	21.555	23.022	0					44	29	4	0	0	0	0.056004	1	7391	7391		93.143	27.34	1	777670			6247	4919	3156	3183	6368	6368					0.07226357931563143
AVTVAPPGAR	10	Unmodified	_AVTVAPPGAR_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7738952636719	2	469.774534	937.534515	-0.12588	-5.9135E-05	-0.57077	-0.00026813	-0.69665	-0.00032727	469.77398956979874	24.204	0.2665	24.204	24.012	24.278	0					7	5	2	0	0	0	0.32758	1	8440	8440		64.207	10.856	1	51268			6248	5043	3157	3184	6369	6369					0.0632489350865626
AVTVAPPGAR	10	Unmodified	_AVTVAPPGAR_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7742614746094	2	469.774534	937.534515	-0.53029	-0.00024912	-0.32682	-0.00015353	-0.8571	-0.00040265	469.77437715091395	24.179	0.3149	24.179	23.981	24.295	0					14	6	3	0	0	0	0.47859	1	8322	8322		47.657	3.5405	1	146040			6249	5043	3157	3184	6370	6370					0.0632489350865626
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2614440917969	2	510.261456	1018.50836	-0.11568	-5.9028E-05	0.41805	0.00021331	0.30237	0.00015429	510.2615722922985	16.213	0.17272	16.213	16.12	16.292	0					20	8	3	0	0	0	0.35021	1	3645	3645		45.972	7.1661	1	508820			6250	5259	3158	3185	6371	6371					-0.00015420453473780071
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.26226806640625	2	510.261456	1018.50836	-0.0098981	-5.0506E-06	-0.31392	-0.00016018	-0.32382	-0.00016523	510.2610035616408	16.489	0.34835	16.489	16.392	16.74	0					18	8	4	0	0	0	0.012231	1	4470	4470		136.27	72.061	1	3503400			6251	5259	3158	3185	6372	6372					-0.00015420453473780071
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2618408203125	2	510.261456	1018.50836	-0.32242	-0.00016452	0.40222	0.00020524	0.079803	4.0721E-05	510.2617910070147	16.215	0.116	16.215	16.147	16.263	0					8	4	2	0	0	0	0.12239	1	3838	3838		74.255	19.479	1	219570			6252	5259	3158	3185	6373	6373					-0.00015420453473780071
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2621154785156	2	510.261456	1018.50836	-0.42123	-0.00021494	1.2321	0.00062869	0.81087	0.00041376	510.26197901479287	16.453	0.31694	16.453	16.347	16.664	0					13	6	4	0	0	0	0.019882	1	4693	4693		122.18	44.858	1	968840			6253	5259	3158	3185	6374	6374					-0.00015420453473780071
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.26153564453125	2	510.261456	1018.50836	-1.8078	-0.00092243	2.0399	0.0010409	0.23219	0.00011848	510.26250826300463	16.257	0.1514	16.257	16.144	16.296	0					10	4	3	0	0	0	0.1424	1	3818	3818		69.628	18.292	1	333510			6254	5259	3158	3185	6375	6375					-0.00015420453473780071
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2613830566406	2	510.261456	1018.50836	3.048	0.0015553	-3.5071	-0.0017895	-0.45908	-0.00023425	510.2595219465062	16.474	0.31416	16.474	16.367	16.681	0					13	6	4	0	0	0	0.026538	1	4558	4558		112.41	38.156	1	1681800			6255	5259	3158	3185	6376	6376					-0.00015420453473780071
AVVAAASQAE	10	Unmodified	_AVVAAASQAE_					0	0	0		ENST00000460031.5_1_1:43220834-43232642:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000492956.1_1_1:43227954-43232675:-|nuORF;nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;P3H1|p.R359Vfs*40|1|0.29|ENSG00000117385|chr1:42757788-42757788|G/-|frameshift_variant	ENST00000460031.5_1_1:43220834-43232642:-|nuORF	ENST00000460031.5_1_1:43220834-43232642:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.740478515625	2	458.740357	915.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.65	1	34.65	34.15	35.15	0								0	0	0	0.3805	1	11696	11696		36.447	3.6962	1				6256	3033	3159	3186	6377	6377					0.00504604138131981
AVVEANKLI	9	Unmodified	_AVVEANKLI_					0	0	0		MTTP|p.K454N|1|0.11|ENSG00000138823|chr4:99606765-99606765|G/T|missense_variant	MTTP|p.K454N|1|0.11|ENSG00000138823|chr4:99606765-99606765|G/T|missense_variant	MTTP|p.K454N|1|0.11|ENSG00000138823|chr4:99606765-99606765|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.79144287109375	2	478.792392	955.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.582	1	42.582	42.082	43.082	0								0	0	0	0.36266	1	13530	13530		21.96	1.013	1				6257	11388	3160	3187	6378	6378					0.09066930965661868
AVVEETRALR	10	Unmodified	_AVVEETRALR_					0	0	0		STXBP4|p.K404Rfs*31|1|0.1|ENSG00000166263|chr17:55078095-55078095|A/-|frameshift_variant;ENSG00000166263|ENST00000376352|STXBP4	STXBP4|p.K404Rfs*31|1|0.1|ENSG00000166263|chr17:55078095-55078095|A/-|frameshift_variant	STXBP4|p.K404Rfs*31|1|0.1|ENSG00000166263|chr17:55078095-55078095|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.55230712890625	3	381.887533	1142.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.911	1	13.911	13.411	14.411	0								0	0	0	0.40797	1	3495	3495		28.081	2.0181	1				6258	5880	3161	3188	6379	6379					0.07515604283321409
AVVEKIHAK	9	Unmodified	_AVVEKIHAK_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.80609130859375	2	497.805834	993.597115	0.18815	9.3663E-05	-0.44569	-0.00022187	-0.25754	-0.0001282	497.80568093935153	16.579	0.13882	16.579	16.503	16.642	0					5	4	2	0	0	0	0.024312	1	3798	3798		98.582	49.14	1	175890			6259	6363	3162	3189	6380	6380					0.10006039576853709
AVVEKIHAK	9	Unmodified	_AVVEKIHAK_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.8057861328125	2	497.805834	993.597115	0.6997	0.00034832	-0.91478	-0.00045538	-0.21508	-0.00010707	497.8053615929595	16.846	0.21187	16.846	16.74	16.952	0					10	5	3	0	0	0	0.011893	1	4645	4645		132.76	61.462	1	1011800			6260	6363	3162	3189	6381	6381					0.10006039576853709
AVVEKIHAK	9	Unmodified	_AVVEKIHAK_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.8055725097656	2	497.805834	993.597115	-1.1271	-0.00056106	0.53679	0.00026722	-0.59027	-0.00029384	497.8061149312228	16.552	0.12282	16.552	16.471	16.593	0					5	3	2	0	0	0	0.014413	1	4005	4005		115.49	66.053	1	265310			6261	6363	3162	3189	6382	6382					0.10006039576853709
AVVEKIHAK	9	Unmodified	_AVVEKIHAK_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.8059387207031	2	497.805834	993.597115	0.17923	8.9224E-05	-0.56577	-0.00028165	-0.38654	-0.00019242	497.8057110985823	16.598	0.091412	16.598	16.555	16.646	0					6	2	3	0	0	0	0.024312	1	3980	3980		98.582	62.964	1	267310			6262	6363	3162	3189	6383	6383					0.10006039576853709
AVVEKIHAK	9	Unmodified	_AVVEKIHAK_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.8056640625	2	497.805834	993.597115	1.0108	0.0005032	-1.2872	-0.00064077	-0.27636	-0.00013757	497.80516296114814	16.788	0.20972	16.788	16.681	16.891	0					7	4	2	0	0	0	0.0079272	1	4732	4732		117.81	51.382	1	1876700			6263	6363	3162	3189	6384	6384					0.10006039576853709
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.3021545410156	2	479.302593	956.590633	0.47278	0.00022661	-4.3322	-0.0020764	-3.8594	-0.0018498	479.30210045514224	35.481	0.4951	35.481	35.344	35.839	0					35	13	4	0	0	0	0.070005	1	13341	13341		88.177	28.059	1	945240			6264	6886	3163	3190	6385	6385					0.11060101625469088
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.3042907714844	2	479.302593	956.590633	-0.11467	-5.4964E-05	0.37262	0.0001786	0.25795	0.00012364	479.30281196192567	35.55	0.29652	35.55	35.433	35.73	0					19	8	3	0	0	0	0.02953	1	13758	13758		109.48	50.696	1	398200			6265	6886	3163	3190	6386	6386					0.11060101625469088
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.3029479980469	2	479.302593	956.590633	0.020368	9.7624E-06	0.70132	0.00033615	0.72169	0.00034591	479.3027674585615	35.316	0.205	35.316	35.227	35.432	0					12	7	2	0	0	0	0.16806	1	12562	12562		65.465	29.847	1	145030			6266	6886	3163	3190	6387	6387					0.11060101625469088
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.3031005859375	2	479.302593	956.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.318	1	35.318	34.818	35.818	0								0	0	0	0.13425	1	12575	12575		63.534	21.138	1				6267	6886	3163	3190	6388	6388					0.11060101625469088
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.30230712890625	2	479.302593	956.590633	-0.65957	-0.00031613	0.24175	0.00011587	-0.41781	-0.00020026	479.3026691750591	35.492	0.27239	35.492	35.381	35.654	0					17	5	4	0	0	0	0.032383	1	13691	13691		106.68	18.929	1	1303100			6268	6886	3163	3190	6389	6389					0.11060101625469088
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.30224609375	2	479.302593	956.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.498	1	35.498	34.998	35.998	0								0	0	0	0.045272	1	13708	13708		88.177	33.401	1				6269	6886	3163	3190	6390	6390					0.11060101625469088
AVVETSLTK	9	Unmodified	_AVVETSLTK_					0	0	0		ENST00000480906.5_1_3:195057651-195163594:-|nuORF;ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ENST00000481463.5_1_3:195078468-195162982:-|nuORF	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.27423095703125	2	474.274032	946.533512	0.67646	0.00032083	1.3932	0.00066074	2.0696	0.00098157	474.2748181229401	25.603	0.096169	25.603	25.556	25.653	0					4	2	2	0	0	0	0.1424	1	8779	8779		69.628	17.328	1	143140			6270	33	3164	3191	6391	6391					0.05810634349097654
AVVETSLTK	9	Unmodified	_AVVETSLTK_					0	0	0		ENST00000480906.5_1_3:195057651-195163594:-|nuORF;ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ENST00000481463.5_1_3:195078468-195162982:-|nuORF	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2743835449219	2	474.274032	946.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.637	1	25.637	25.137	26.137	0								0	0	0	0.14881	1	9124	9124		60.118	10.094	1				6271	33	3164	3191	6392	6392					0.05810634349097654
AVVFGITWI	9	Unmodified	_AVVFGITWI_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2900085449219	2	503.292028	1004.5695	-2.0459	-0.0010297	-1.3127	-0.00066068	-3.3586	-0.0016904	503.2913286464526	34.846	0.37324	34.846	34.741	35.115	0					29	13	3	0	0	0	0.11118	1	12371	12371		76.847	21.952	1	677950			6272	4641	3165	3192	6393	6393					0.06740136316614098
AVVGAVVFQK	10	Unmodified	_AVVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.30816650390625	2	509.30821	1016.60187	-0.10724	-5.462E-05	0.31991	0.00016293	0.21267	0.00010831	509.30829572298967	34.561	0.24684	34.561	34.48	34.727	0					17	10	3	0	0	0	0.043105	1	11300	11300		111.65	67.271	1	242330			6273	6154	3166	3193	6394	6394					0.09422923719614573
AVVGAVVFQK	10	Unmodified	_AVVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.3080749511719	2	509.30821	1016.60187	-0.017624	-8.976E-06	0.031287	1.5935E-05	0.013663	6.9587E-06	509.3082158691264	34.845	0.3149	34.845	34.718	35.033	0					22	8	3	0	0	0	0.0089051	1	13003	13003		147.69	67.981	1	1019800			6274	6154	3166	3193	6395	6395					0.09422923719614573
AVVGAVVFQK	10	Unmodified	_AVVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3101501464844	2	509.30821	1016.60187	-0.3821	-0.00019461	0.33229	0.00016924	-0.049807	-2.5367E-05	509.3085147153564	34.619	0.16566	34.619	34.558	34.724	0					15	7	3	0	0	0	0.20011	1	11679	11679		79.451	38.673	1	113960			6275	6154	3166	3193	6396	6396					0.09422923719614573
AVVGAVVFQK	10	Unmodified	_AVVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3080749511719	2	509.30821	1016.60187	-0.40632	-0.00020694	0.36293	0.00018484	-0.043396	-2.2102E-05	509.30842054161354	34.825	0.31515	34.825	34.713	35.028	0					23	9	4	0	0	0	0.079553	1	13443	13443		99.375	57.948	1	503930			6276	6154	3166	3193	6397	6397					0.09422923719614573
AVVGEGREK	9	Unmodified	_AVVGEGREK_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7616271972656	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.539	1	14.539	14.039	15.039	0								0	0	0	0.22075	1	3005	3005		47.96	5.0953	1				6277	1469	3167	3194	6398	6398					0.034679992663768644
AVVGGLDIHKK	11	Unmodified	_AVVGGLDIHKK_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.5643005371094	3	379.564391	1135.67134	0.81974	0.00031114	-1.2285	-0.0004663	-0.40878	-0.00015516	379.5640329635058	22.65	0.25577	22.65	22.561	22.817	0					13	6	3	0	0	0	0.575	1	7403	7403		38.754	4.832	1	770670			6278	7844	3168	3195	6399	6399					0.10893382668359664
AVVGGLDIHKK	11	Unmodified	_AVVGGLDIHKK_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.5643615722656	3	379.564391	1135.67134	0.52934	0.00020092	-0.26219	-9.9517E-05	0.26715	0.0001014	379.5643304383953	22.558	0.90949	22.558	22.253	23.162	0					26	18	2	0	0	0	0.50799	1	7640	7640		43.651	13.082	1	2016800			6279	7844	3168	3195	6400	6400					0.10893382668359664
AVVGGLDIHKK	11	Unmodified	_AVVGGLDIHKK_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.843505859375	2	568.842948	1135.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.57	1	22.57	22.07	23.07	0								0	0	0	0.32049	1	7658	7658		39.873	13.18	1				6280	7844	3168	3195	6401	6401					0.10893382668359664
AVVGPVGAGK	10	Unmodified	_AVVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.7578125	2	427.758352	853.502152	-0.97428	-0.00041675	0.23599	0.00010095	-0.73829	-0.00031581	427.758586873644	22.172	0.16592	22.172	22.04	22.206	0					11	5	3	0	0	0	0.42631	1	6463	6463		53.351	7.3995	1	114930			6281	3407;17	3169	3196	6402	6402					0.0695410610566114
AVVGPVGAGK	10	Unmodified	_AVVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.7581481933594	2	427.758352	853.502152	-0.41338	-0.00017682	-0.32796	-0.00014029	-0.74134	-0.00031711	427.75838027586036	22.297	0.26528	22.297	22.19	22.455	0					14	5	4	0	0	0	0.357	1	7407	7407		60.972	18.497	1	431100			6282	3407;17	3169	3196	6403	6403					0.0695410610566114
AVVGPVGAGK	10	Unmodified	_AVVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.75830078125	2	427.758352	853.502152	1.0521	0.00045004	-1.5571	-0.00066608	-0.50504	-0.00021604	427.7578491675481	22.329	0.2654	22.329	22.173	22.438	0					15	5	4	0	0	0	0.24485	1	7423	7423		73.975	26.059	1	865540			6283	3407;17	3169	3196	6404	6404					0.0695410610566114
AVVGRLVSPP	10	Unmodified	_AVVGRLVSPP_					0	0	0			REV__ENST00000272133.3_1_1:224804098-224804761:+|nuORF	REV__ENST00000272133.3_1_1:224804098-224804761:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.2061462402344	3	332.206315	993.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.581	1	16.581	16.081	17.081	0								0	0	0	0.37602	1	4010	4010		37.812	8.6415	1		+		6284	18104	3170	3197	6405	6405					0.1000603957684234
AVVHQFCHL	9	Unmodified	_AVVHQFCHL_					0	0	0			REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1	REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.75634765625	2	527.268561	1052.52257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.275	1	39.275	38.775	39.775	0								0	0	0	0.27166	1	14947	14947		40.573	0.51445	1		+		6285	15736	3171	3198	6406	6406					-0.0015904650617812877
AVVHVVFA	8	Unmodified	_AVVHVVFA_					0	0	0		CCR5|p.A133V|1|0.05|ENSG00000160791|chr3:46373300-46373300|C/T|missense_variant	CCR5|p.A133V|1|0.05|ENSG00000160791|chr3:46373300-46373300|C/T|missense_variant	CCR5|p.A133V|1|0.05|ENSG00000160791|chr3:46373300-46373300|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.2479248046875	2	421.250163	840.485774	-2.5465	-0.0010727	-2.2757	-0.00095865	-4.8222	-0.0020314	421.2490412080443	20.817	0.15095	20.817	20.725	20.876	0					6	3	2	0	0	0	0.63381	1	5939	5939		43.626	0	1	75410			6286	420	3172	3199	6407	6407					0.05915024939565683
AVVKPGNTK	9	Unmodified	_AVVKPGNTK_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34;FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant;FBXO34|p.I120Lfs*13|3|0.36|ENSG00000178974|chr14:55350743-55350743|A/-|frameshift_variant	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2767639160156	2	457.276909	912.539266	0.045648	2.0874E-05	-0.22142	-0.00010125	-0.17577	-8.0376E-05	457.2768002137727	13.925	0.24026	13.925	13.803	14.043	0					26	11	3	0	0	0	0.023928	1	2774	2774		115.49	14.282	1	523360			6287	6745	3173	3200	6408	6408					0.07949777651435852
AVVKPGNTK	9	Unmodified	_AVVKPGNTK_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34;FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant;FBXO34|p.I120Lfs*13|3|0.36|ENSG00000178974|chr14:55350743-55350743|A/-|frameshift_variant	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.27740478515625	2	457.276909	912.539266	0.045928	2.1002E-05	-0.24401	-0.00011158	-0.19808	-9.0578E-05	457.27684367880914	13.984	0.22613	13.984	13.841	14.067	0					19	9	3	0	0	0	0.071197	1	2862	2862		87.754	2.8388	1	363370			6288	6745	3173	3200	6409	6409					0.07949777651435852
AVVKPGNTK	9	Unmodified	_AVVKPGNTK_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34;FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant;FBXO34|p.I120Lfs*13|3|0.36|ENSG00000178974|chr14:55350743-55350743|A/-|frameshift_variant	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.27728271484375	2	457.276909	912.539266	0.21953	0.00010039	0.66368	0.00030349	0.88321	0.00040387	457.27708555486834	13.989	0.15778	13.989	13.877	14.035	0					12	6	3	0	0	0	0.028876	1	2870	2870		110.12	25.204	1	225260			6289	6745	3173	3200	6410	6410					0.07949777651435852
AVVNTPQLI	9	Unmodified	_AVVNTPQLI_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.78448486328125	2	477.784567	953.554582	-0.32795	-0.00015669	0.45177	0.00021585	0.12382	5.9157E-05	477.7844748949197	32.934	0.53333	32.934	32.659	33.192	0					38	15	4	0	0	0	0.16524	1	11458	11458		65.803	0	1	394940	+		6290	15973	3174	3201	6411	6411					0.07594644448624877
AVVQTLVAK	9	Unmodified	_AVVQTLVAK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.79473876953125	2	464.794935	927.575317	0.083597	3.8855E-05	-0.91982	-0.00042753	-0.83622	-0.00038867	464.7945789286086	27.884	0.1824	27.884	27.816	27.998	0					9	6	2	0	0	0	0.11898	1	8645	8645		75.043	25.602	1	113110			6291	5817	3175	3202	6412	6412					0.10863234828275381
AVVQTLVAK	9	Unmodified	_AVVQTLVAK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.794677734375	2	464.794935	927.575317	0.54046	0.0002512	-1.1097	-0.00051579	-0.56926	-0.00026459	464.7944122760334	28.169	0.25991	28.169	28.081	28.341	0					15	6	3	0	0	0	0.0076184	1	9935	9935		146.79	50.595	1	925070			6292	5817	3175	3202	6413	6413					0.10863234828275381
AVVQTLVAK	9	Unmodified	_AVVQTLVAK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.79473876953125	2	464.794935	927.575317	-0.13934	-6.4766E-05	-0.41366	-0.00019227	-0.55301	-0.00025703	464.79469116630844	28.15	0.25297	28.15	28.055	28.308	0					11	5	3	0	0	0	0.00324	1	10268	10268		167.23	53.817	1	770020			6293	5817	3175	3202	6414	6414					0.10863234828275381
AVVQTLVAK	9	Unmodified	_AVVQTLVAK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.295654296875	2	464.794935	927.575317	-0.16316	-7.5835E-05	-0.036929	-1.7165E-05	-0.20009	-9.3E-05	464.794947902782	27.952	0.18231	27.952	27.875	28.057	0					7	4	2	0	0	0	0.070005	1	9212	9212		88.177	18.549	1	59694			6294	5817	3175	3202	6415	6415					0.10863234828275381
AVVQTLVAK	9	Unmodified	_AVVQTLVAK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.79473876953125	2	464.794935	927.575317	-0.48762	-0.00022664	0.217	0.00010086	-0.27062	-0.00012578	464.7950363060856	28.118	0.31848	28.118	27.91	28.228	0					14	6	3	0	0	0	0.012936	1	10136	10136		134.77	47.069	1	1511100			6295	5817	3175	3202	6416	6416					0.10863234828275381
AVVQVALDK	9	Unmodified	_AVVQVALDK_					0	0	0		ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1;ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7842102050781	2	471.784567	941.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.307	1	30.307	29.807	30.807	0								0	0	0	0.18541	1	11314	11314		53.089	12.311	1				6296	12	3176	3203	6417	6417					0.0814664444861819
AVVQVALDK	9	Unmodified	_AVVQVALDK_					0	0	0		ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1;ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.78448486328125	2	471.784567	941.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.281	1	30.281	29.781	30.781	0								0	0	0	0.24544	1	11192	11192		44.377	1.981	1				6297	12	3176	3203	6418	6418					0.0814664444861819
AVVRMKRARK	10	Unmodified	_AVVRMKRARK_					0	0	0		ENST00000456312.5_1_7:72300234-72300363:+|nuORF;ENST00000423945.5_1_7:72300234-72302185:+|nuORF;ENST00000437201.5_1_7:72300234-72301326:+|nuORF	ENST00000456312.5_1_7:72300234-72300363:+|nuORF	ENST00000456312.5_1_7:72300234-72300363:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.5931091308594	3	405.592398	1213.75536	0.97105	0.00039385	0.71464	0.00028985	1.6857	0.0006837	405.5926691444166	17.66	0.20871	17.66	17.579	17.788	0					16	5	4	0	0	0	0.65051	1	5031	5031		28.081	2.0181	1	2075200			6298	9417	3177	3204	6419	6419					0.15703635284285156
AVVSGESCPGK	11	Unmodified	_AVVSGESCPGK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7555541992188	2	517.252774	1032.491	1.3637	0.00070538	0.13877	7.178E-05	1.5025	0.00077716	517.2523277398273	20.772	0.088144	20.772	20.731	20.819	0					5	3	2	0	0	0	0.18862	1	5624	5624		75.652	34.226	1	92650			6299	2223	3178	3205	6420	6420					-0.023950840507950488
AVVSGESCPGK	11	Unmodified	_AVVSGESCPGK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2529907226562	2	517.252774	1032.491	1.2833	0.00066379	-1.8615	-0.00096286	-0.57819	-0.00029907	517.2519509715843	21.056	0.26017	21.056	20.97	21.23	0					9	6	2	0	0	0	0.10275	1	6646	6646		89.029	39.493	1	453540			6300	2223	3178	3205	6421	6421					-0.023950840507950488
AVVSGVHKK	9	Unmodified	_AVVSGVHKK_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.7845153808594	2	462.784902	923.55525	-0.44361	-0.0002053	-0.38435	-0.00017787	-0.82796	-0.00038317	462.7847599241306	13.426	0.17581	13.426	13.376	13.552	0					14	9	3	0	0	0	0.13267	1	2631	2631		71.877	11.584	1	188810			6301	42	3179	3206	6422	6422					0.0904148388832482
AVVSGVHKK	9	Unmodified	_AVVSGVHKK_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.78472900390625	2	462.784902	923.55525	-0.71351	-0.0003302	0.39563	0.00018309	-0.31788	-0.00014711	462.7851040807849	13.702	0.28483	13.702	13.613	13.897	0					14	7	3	0	0	0	0.028876	1	3181	3181		110.12	49.148	1	3215000			6302	42	3179	3206	6423	6423					0.0904148388832482
AVVSGVHKK	9	Unmodified	_AVVSGVHKK_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.7844543457031	2	462.784902	923.55525	-1.1486	-0.00053154	0.34072	0.00015768	-0.80786	-0.00037386	462.785054940823	13.473	0.061475	13.473	13.433	13.494	0					7	3	3	0	0	0	0.063823	1	2774	2774		90.37	19.074	1	213370			6303	42	3179	3206	6424	6424					0.0904148388832482
AVVSGVHKK	9	Unmodified	_AVVSGVHKK_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7846984863281	2	462.784902	923.55525	-0.96629	-0.00044719	0.35102	0.00016245	-0.61527	-0.00028474	462.78512027428104	13.679	0.24789	13.679	13.625	13.873	0					7	5	2	0	0	0	0.025517	1	3394	3394		113.41	52.44	1	1612100			6304	42	3179	3206	6425	6425					0.0904148388832482
AVVSGVHKK	9	Unmodified	_AVVSGVHKK_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.784912109375	2	462.784902	923.55525	-2.4351	-0.0011269	2.3011	0.0010649	-0.13408	-6.2049E-05	462.7858990637168	13.495	0.047691	13.495	13.45	13.498	0					4	2	2	0	0	0	0.037569	1	2718	2718		101.6	59.126	1	54387			6305	42	3179	3206	6426	6426					0.0904148388832482
AVVSIPRQLPG	11	Unmodified	_AVVSIPRQLPG_					0	0	0		nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2	nc|ENSG00000168003|P08195-3|SLC3A2	nc|ENSG00000168003|P08195-3|SLC3A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.5643005371094	3	379.564391	1135.67134	0.66021	0.00025059	-0.79632	-0.00030226	-0.13611	-5.1663E-05	379.5640567899396	22.53	0.36789	22.53	22.421	22.789	0					18	7	4	0	0	0	0.575	1	7516	7516		38.754	3.6016	1	1760400			6306	11637	3180	3207	6427	6427					0.10893382668359664
AVVSLHVSK	9	Unmodified	_AVVSLHVSK_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2840576171875	2	470.284734	938.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.191	1	24.191	23.691	24.691	0								0	0	0	0.34845	1	7370	7370		25.574	0.12388	1				6307	3426	3181	3208	6428	6428					0.08318064168486217
AVVSVIFLK	9	Unmodified	_AVVSVIFLK_					0	0	0		TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant;TMTC3|p.K758Nfs*31|1|0.16|ENSG00000139324|chr12:88195172-88195172|A/-|frameshift_variant;ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.S400Kfs*4|1|0.42|ENSG00000139324|chr12:88172739-88172740|-/A|frameshift_variant	TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant	TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.31494140625	2	488.315503	974.616454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.274	1	46.274	45.774	46.774	0								0	0	0	0.10121	1	18520	18520		71.296	26.765	1				6308	4320	3182	3209	6429	6429					0.12812995867750487
AVVTGIKKK	9	Unmodified	_AVVTGIKKK_					0	0	0		ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.31866455078125	2	472.318577	942.622602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.218	1	15.218	14.718	15.718	0								0	0	0	0.27025	1	3269	3269		40.778	17.736	1				6309	4992	3183	3210	6430	6430					0.14899514099272437
AVVTTRLQSQ	10	Unmodified	_AVVTTRLQSQ_					0	0	0			REV__ENST00000524243.5_1_8:125710354-125740196:-|nuORF	REV__ENST00000524243.5_1_8:125710354-125740196:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.8145141601562	2	551.814387	1101.61422	1.8266	0.0010079	-0.98893	-0.00054571	0.83763	0.00046222	551.8137747223744	28.254	0.25382	28.254	28.165	28.419	0					10	6	2	0	0	0	0.64162	1	9976	9976		29.17	0.020503	1	382710	+		6310	16381	3184	3211	6431	6431					0.06747915391997594
AVWTRKVLG	9	Unmodified	_AVWTRKVLG_					0	0	0		ENST00000508648.5_1_4:129100626-129128462:+|nuORF;nc|ENSG00000138709|Q659C4-9|LARP1B	ENST00000508648.5_1_4:129100626-129128462:+|nuORF	ENST00000508648.5_1_4:129100626-129128462:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.8784484863281	3	343.87831	1028.6131	-0.75789	-0.00026062	0.85046	0.00029245	0.092571	3.1833E-05	343.8785766687568	28.854	0.19761	28.854	28.769	28.966	0					10	7	2	0	0	0	0.60749	1	9364	9364		20.947	0	1	76847			6311	10211	3185	3212	6432	6432					0.09993745813744681
AVWVKPSLR	9	Unmodified	_AVWVKPSLR_					0	0	0			REV__TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	REV__TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.54876708984375	3	352.550193	1054.62875	-1.9999	-0.00070508	-1.6292	-0.00057437	-3.6291	-0.0012794	352.5495589459941	18.535	0.15024	18.535	18.428	18.578	0					7	4	2	0	0	0	0.42902	1	4862	4862		39.253	2.8061	1	107760	+		6312	16344	3186	3213	6433	6433					0.10362032330772308
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7611083984375	2	536.258914	1070.50327	1.3075	0.00070114	-0.35222	-0.00018888	0.95523	0.00051225	536.7601320942232	26.451	0.15085	26.451	26.387	26.538	0					8	5	2	0	0	0	0.23612	1	8051	8051		75.043	18.322	1	80385			6313	4690	3187	3214	6434	6434					-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.2593994140625	2	536.258914	1070.50327	2.1586	0.0011576	-1.2127	-0.00065034	0.94589	0.00050724	536.2582054576352	26.677	0.27714	26.677	26.581	26.858	0					15	6	4	0	0	0	0.24329	1	9241	9241		74.165	24.131	1	712000			6314	4690	3187	3214	6435	6435					-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.2593994140625	2	536.258914	1070.50327	-0.50064	-0.00026847	1.6156	0.00086639	1.115	0.00059791	536.2598206232146	26.464	0.23365	26.464	26.376	26.609	0					14	8	2	0	0	0	0.30252	1	8319	8319		66.962	16.928	1	135560			6315	4690	3187	3214	6436	6436					-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2595825195312	2	536.258914	1070.50327	1.8398	0.00098662	-0.73154	-0.00039229	1.1083	0.00059433	536.2585866956391	26.719	0.26806	26.719	26.611	26.879	0					16	5	4	0	0	0	0.15477	1	9608	9608		85.862	36.42	1	1374100			6316	4690	3187	3214	6437	6437					-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.2593383789062	2	536.258914	1070.50327	1.0581	0.00056744	0.48653	0.00026091	1.5447	0.00082834	536.2591204019461	26.557	0.14062	26.557	26.467	26.608	0					6	3	2	0	0	0	0.09653	1	8561	8561		96.034	34.342	1	140790			6317	4690	3187	3214	6438	6438					-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.25927734375	2	536.258914	1070.50327	-1.3931	-0.00074706	2.436	0.0013063	1.0429	0.00055926	536.2599337004311	26.559	0.1389	26.559	26.456	26.595	0					7	3	3	0	0	0	0.60281	1	8572	8572		33.922	3.418	1	107000			6318	4690	3187	3214	6439	6439					-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2591552734375	2	536.258914	1070.50327	1.9273	0.0010335	-1.4027	-0.00075223	0.52455	0.00028129	536.2581706710929	26.647	0.21802	26.647	26.587	26.805	0					11	4	4	0	0	0	0.22691	1	9451	9451		76.17	29.713	1	940070			6319	4690	3187	3214	6440	6440					-0.029157243160852886
AVYDRPGASPK	11	Unmodified	_AVYDRPGASPK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.806640625	2	580.806562	1159.59857	0.66341	0.00038531	-0.2751	-0.00015978	0.38832	0.00022554	580.806242829809	19.293	0.12465	19.293	19.214	19.338	0					6	3	2	0	0	0	0.12478	1	4973	4973		83.647	23.529	1	107660			6320	1145	3188	3215	6441	6441					0.02515628874948561
AVYDRPGASPK	11	Unmodified	_AVYDRPGASPK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.8067626953125	2	580.806562	1159.59857	-0.060757	-3.5288E-05	0.28773	0.00016712	0.22697	0.00013183	580.8069854159125	19.308	0.17882	19.308	19.203	19.382	0					11	5	3	0	0	0	0.051542	1	5194	5194		104.42	44.305	1	415610			6321	1145	3188	3215	6442	6442					0.02515628874948561
AVYDRPGASPK	11	Unmodified	_AVYDRPGASPK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.8070678710938	2	580.806562	1159.59857	-0.35902	-0.00020852	1.1913	0.0006919	0.83225	0.00048338	580.8073708094179	19.503	0.2621	19.503	19.396	19.659	0					13	5	4	0	0	0	3.867E-05	1	6165	6165		166.07	78.317	1	2284500			6322	1145	3188	3215	6443	6443					0.02515628874948561
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;INTS8|p.F279Lfs*6|1|0.34|ENSG00000164941|chr8:94836602-94836602|T/-|frameshift_variant	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.2784423828125	2	540.277638	1078.54072	0.97101	0.00052462	-0.26721	-0.00014437	0.7038	0.00038025	540.277569470375	16.125	0.18334	16.125	16.051	16.234	0					21	8	3	0	0	0	0.032383	1	3612	3612		106.68	45.711	1	1152500			6323	5745	3189	3216	6444	6444					0.004593669495079666
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;INTS8|p.F279Lfs*6|1|0.34|ENSG00000164941|chr8:94836602-94836602|T/-|frameshift_variant	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.277587890625	2	540.277638	1078.54072	0.27061	0.0001462	-0.011938	-6.45E-06	0.25867	0.00013975	540.2775981526948	16.399	0.31751	16.399	16.303	16.62	0					19	7	3	0	0	0	0.026848	1	4444	4444		112.11	27.192	1	11945000			6324	5745	3189	3216	6445	6445					0.004593669495079666
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;INTS8|p.F279Lfs*6|1|0.34|ENSG00000164941|chr8:94836602-94836602|T/-|frameshift_variant	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.27734375	2	540.277638	1078.54072	-0.1118	-6.0401E-05	0.83215	0.00044959	0.72036	0.00038919	540.2780852139169	16.127	0.19936	16.127	16.064	16.263	0					17	7	4	0	0	0	0.078509	1	3797	3797		85.161	24.189	1	999050			6325	5745	3189	3216	6446	6446					0.004593669495079666
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;INTS8|p.F279Lfs*6|1|0.34|ENSG00000164941|chr8:94836602-94836602|T/-|frameshift_variant	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2777709960938	2	540.277638	1078.54072	0.30719	0.00016597	0.0015568	8.4108E-07	0.30875	0.00016681	540.2776675996977	16.355	0.26807	16.355	16.247	16.515	0					13	5	3	0	0	0	0.032383	1	4667	4667		106.68	44.576	1	8914000			6326	5745	3189	3216	6447	6447					0.004593669495079666
AVYGGFKSK	9	Unmodified	_AVYGGFKSK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7632141113281	2	478.763635	955.512717	-0.032845	-1.5725E-05	-0.79538	-0.0003808	-0.82822	-0.00039652	478.7633091633703	20.949	0.12158	20.949	20.868	20.99	0					6	3	2	0	0	0	0.22377	1	5684	5684		58.782	3.2778	1	203310			6327	7385	3190	3217	6448	6448					0.03318088760090632
AVYGGFKSK	9	Unmodified	_AVYGGFKSK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.76324462890625	2	478.763635	955.512717	-0.25879	-0.0001239	-0.3089	-0.00014789	-0.56769	-0.00027179	478.76346766132895	21.255	0.22837	21.255	21.163	21.392	0					12	5	3	0	0	0	0.019882	1	6736	6736		122.18	59.198	1	1273600			6328	7385	3190	3217	6449	6449					0.03318088760090632
AVYGGFKSK	9	Unmodified	_AVYGGFKSK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.76239013671875	2	478.763635	955.512717	-0.25822	-0.00012363	-0.50871	-0.00024355	-0.76693	-0.00036718	478.7633424422391	20.964	0.18412	20.964	20.881	21.065	0					9	5	3	0	0	0	0.087861	1	5931	5931		82.241	13.756	1	246810			6329	7385	3190	3217	6450	6450					0.03318088760090632
AVYGGFKSK	9	Unmodified	_AVYGGFKSK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7635192871094	2	478.763635	955.512717	-0.4542	-0.00021746	0.13299	6.3669E-05	-0.32122	-0.00015379	478.7636751300788	21.199	0.26211	21.199	21.095	21.357	0					14	5	4	0	0	0	0.013878	1	6980	6980		132.76	69.779	1	1168400			6330	7385	3190	3217	6451	6451					0.03318088760090632
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.9202880859375	3	443.585966	1327.73607	0.23693	0.0001051	-0.74421	-0.00033012	-0.50728	-0.00022502	443.5856310143783	16.126	0.16559	16.126	16.057	16.222	0					16	7	3	0	0	0	0.72154	1	3607	3607		42.338	22.711	1	241580			6331	4701	3191	3218	6452	6452					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	664.8753051757812	2	664.875311	1327.73607	0.24372	0.00016204	-0.4307	-0.00028636	-0.18698	-0.00012432	664.8749714837539	16.125	0.085003	16.125	16.072	16.157	0					6	3	2	0	0	0	0.29048	1	3614	3614		63.694	28.542	1	172590			6332	4701	3191	3218	6453	6453					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	664.8757934570312	2	664.875311	1327.73607	-0.48394	-0.00032176	0.92916	0.00061778	0.44522	0.00029602	664.875980468096	16.378	0.35923	16.378	16.303	16.662	0					15	8	4	0	0	0	0.00055771	1	4426	4426		139.38	84.66	1	897130			6333	4701	3191	3218	6454	6454					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.5855712890625	3	443.585966	1327.73607	-1.1596	-0.00051436	0.39683	0.00017603	-0.76273	-0.00033833	443.5859558264864	16.133	0.15415	16.133	16.069	16.223	0					8	5	2	0	0	0	0.68382	1	3803	3803		38.714	20.881	1	156670			6334	4701	3191	3218	6455	6455					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	664.87451171875	2	664.875311	1327.73607	1.4098	0.00093731	-1.8231	-0.0012121	-0.41335	-0.00027482	664.8736677697937	16.126	0.12564	16.126	16.064	16.189	0					6	4	2	0	0	0	0.59204	1	3811	3811		37.508	11.934	1	105490			6335	4701	3191	3218	6456	6456					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	664.8756713867188	2	664.875311	1327.73607	-1.159	-0.00077057	1.3158	0.00087486	0.15686	0.00010429	664.8763862538639	16.355	0.1664	16.355	16.247	16.413	0					8	3	3	0	0	0	0.35352	1	4671	4671		56.632	32.113	1	507940			6336	4701	3191	3218	6457	6457					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.5860290527344	3	443.585966	1327.73607	0.42255	0.00018744	-0.55575	-0.00024652	-0.1332	-5.9084E-05	443.9198404213989	16.174	0.2158	16.174	16.106	16.322	0					10	6	2	0	0	0	0.68382	1	3768	3768		38.714	17.877	1	137810			6337	4701	3191	3218	6458	6458					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.585693359375	3	443.585966	1327.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.176	1	16.176	15.676	16.676	0								0	0	0	0.45614	1	3779	3779		56.632	32.4	1				6338	4701	3191	3218	6459	6459					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	664.8749389648438	2	664.875311	1327.73607	-2.4526	-0.0016307	2.3292	0.0015486	-0.12345	-8.2076E-05	664.8765766217182	16.162	0.1443	16.162	16.115	16.259	0					5	4	2	0	0	0	0.55968	1	3776	3776		39.873	9.5554	1	47056			6339	4701	3191	3218	6460	6460					0.08530957474340539
AVYGQKEIHRK	11	Unmodified	_AVYGQKEIHRK_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.5856628417969	3	443.585966	1327.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.361	1	16.361	15.861	16.861	0								0	0	0	0.32997	1	4514	4514		73.841	25.24	1				6340	4701	3191	3218	6461	6461					0.08530957474340539
AVYGQNDIHHK	11	Unmodified	_AVYGQNDIHHK_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.88238525390625	3	427.882671	1280.62618	0.85425	0.00036552	-1.2356	-0.00052871	-0.38139	-0.00016319	427.8820892433309	17.853	0.18329	17.853	17.776	17.959	0					9	4	3	0	0	0	0.6208	1	5107	5107		35.178	6.6015	1	773850			6341	4285	3192	3219	6462	6462					-0.002904678648292247
AVYGQNDIHHK	11	Unmodified	_AVYGQNDIHHK_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	641.3206176757812	2	641.320368	1280.62618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.583	1	17.583	17.083	18.083	0								0	0	0	0.43508	1	4434	4434		26.063	0.9374	1				6342	4285	3192	3219	6463	6463					-0.002904678648292247
AVYGQNDIHHK	11	Unmodified	_AVYGQNDIHHK_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.88250732421875	3	427.882671	1280.62618	-0.41284	-0.00017665	-0.022075	-9.4454E-06	-0.43491	-0.00018609	427.88268316775515	17.792	0.21299	17.792	17.734	17.947	0					7	4	2	0	0	0	0.64323	1	5211	5211		33.039	14.508	1	733950			6343	4285	3192	3219	6464	6464					-0.002904678648292247
AVYGQNDIHHK	11	Unmodified	_AVYGQNDIHHK_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.8824157714844	3	427.882671	1280.62618	1.053	0.00045057	-1.6715	-0.00071522	-0.61853	-0.00026466	427.8820553685436	17.826	0.16602	17.826	17.717	17.883	0					10	3	4	0	0	0	0.66915	1	5227	5227		30.569	7.0462	1	799890			6344	4285	3192	3219	6465	6465					-0.002904678648292247
AVYKTHVEK	9	Unmodified	_AVYKTHVEK_					0	0	0		ENST00000529565.1_1_11:104819221-104819389:-|nuORF;ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8695373535156	3	358.869591	1073.58694	0.48438	0.00017383	-0.59069	-0.00021198	-0.10631	-3.8151E-05	358.869356763543	15.85	0.30029	15.85	15.763	16.064	0					14	7	4	0	0	0	0.30951	1	4187	4187		95.815	95.815	1	1227200			6345	7408	3193	3220	6466	6466					0.0530943185160595
AVYKTHVEK	9	Unmodified	_AVYKTHVEK_					0	0	0		ENST00000529565.1_1_11:104819221-104819389:-|nuORF;ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8013916015625	2	537.800749	1073.58694	1.3402	0.00072076	-0.15906	-8.554E-05	1.1811	0.00063522	537.8007003389362	15.841	0.15984	15.841	15.736	15.896	0					8	3	3	0	0	0	0.02429	1	4401	4401		114.89	57.083	1	626750			6346	7408	3193	3220	6467	6467					0.0530943185160595
AVYKTHVEK	9	Unmodified	_AVYKTHVEK_					0	0	0		ENST00000529565.1_1_11:104819221-104819389:-|nuORF;ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.8011474609375	2	537.800749	1073.58694	2.2298	0.0011992	-1.2677	-0.00068179	0.96209	0.00051741	537.8000247451889	15.617	0.093622	15.617	15.546	15.639	0					5	3	2	0	0	0	0.070005	1	3543	3543		88.177	29.947	1	78426			6347	7408	3193	3220	6468	6468					0.0530943185160595
AVYKTHVEK	9	Unmodified	_AVYKTHVEK_					0	0	0		ENST00000529565.1_1_11:104819221-104819389:-|nuORF;ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.86962890625	3	358.869591	1073.58694	-2.033	-0.00072957	2.4681	0.00088572	0.43513	0.00015616	358.8702194842341	15.615	0.087275	15.615	15.56	15.648	0					6	3	2	0	0	0	0.21263	1	3546	3546		85.862	35.828	1	71288			6348	7408	3193	3220	6469	6469					0.0530943185160595
AVYKTHVEK	9	Unmodified	_AVYKTHVEK_					0	0	0		ENST00000529565.1_1_11:104819221-104819389:-|nuORF;ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8012084960938	2	537.800749	1073.58694	0.69544	0.00037401	0.35891	0.00019302	1.0544	0.00056703	537.8009645849589	15.857	0.16607	15.857	15.747	15.913	0					8	3	3	0	0	0	0.012936	1	4259	4259		134.77	62.888	1	609700			6349	7408	3193	3220	6470	6470					0.0530943185160595
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(72)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.5480041503906	3	424.548189	1270.62274	0.32563	0.00013825	-1.0571	-0.00044879	-0.73146	-0.00031054	424.5478935084544	20.337	0.2042	20.337	20.239	20.444	0					14	6	4	0	0	0	0.21704	1	5424	5424		72.243	31.163	1	488920			6350	7894	3194	3221	6471	6471	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(63)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.5478515625	3	424.548189	1270.62274	0.94269	0.00040022	-2.0753	-0.00088107	-1.1326	-0.00048085	424.5474404178636	20.66	0.34	20.66	20.564	20.904	0					24	7	5	0	0	0	0.29287	1	6436	6436		63.426	28.274	1	5295600			6351	7894	3194	3221	6472	6472	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(150)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	636.318603515625	2	636.318645	1270.62274	0.90466	0.00057566	-1.0306	-0.00065581	-0.12597	-8.0156E-05	636.3180904286469	20.65	0.33824	20.65	20.51	20.848	0					18	7	4	0	0	0	7.8071E-05	1	6447	6447		145.46	63.22	1	2162300			6352	7894	3194	3221	6473	6473	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(79)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	636.3181762695312	2	636.318645	1270.62274	0.9637	0.00061322	-1.3499	-0.00085896	-0.3862	-0.00024574	636.3177553183752	20.351	0.22062	20.351	20.277	20.498	0					18	6	4	0	0	0	0.15663	1	5658	5658		79.489	45.567	1	1049200			6353	7894	3194	3221	6474	6474	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(67)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.5479736328125	3	424.548189	1270.62274	-0.32516	-0.00013805	-0.062379	-2.6483E-05	-0.38754	-0.00016453	424.54826196665954	20.54	0.16703	20.54	20.478	20.645	0					10	3	4	0	0	0	0.26131	1	6681	6681		66.962	32.875	1	922840			6354	7894	3194	3221	6475	6475	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(160)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	636.3184814453125	2	636.318645	1270.62274	-0.31149	-0.00019821	-0.19511	-0.00012415	-0.5066	-0.00032236	636.3186548130054	20.553	0.41841	20.553	20.445	20.863	0					25	8	4	0	0	0	5.4966E-05	1	6688	6688		159.34	82.562	1	6501100			6355	7894	3194	3221	6476	6476	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(46)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.54803466796875	3	424.548189	1270.62274	0.14789	6.2785E-05	-0.68021	-0.00028878	-0.53232	-0.000226	424.54795694262106	20.415	0.13899	20.415	20.324	20.463	0					8	3	3	0	0	0	0.46959	1	5727	5727		46.457	18.375	1	364220			6356	7894	3194	3221	6477	6477	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(46)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.5486145019531	3	424.548189	1270.62274	-0.020617	-8.753E-06	-0.64063	-0.00027198	-0.66124	-0.00028073	424.5477921807281	20.424	0.18199	20.424	20.353	20.535	0					5	4	2	0	0	0	0.46959	1	5740	5740		46.457	21.331	1	105950			6357	7894	3194	3221	6478	6478	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(79)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.5480651855469	3	424.548189	1270.62274	-0.36967	-0.00015694	-0.22344	-9.4863E-05	-0.59312	-0.00025181	424.54821228647745	20.552	0.3675	20.552	20.443	20.811	0					21	7	5	0	0	0	0.16013	1	6556	6556		79.07	43.892	1	6548700			6358	7894	3194	3221	6479	6479	342				-0.0017489875372120878
AVYLSTCKDSK	11	Carbamidomethyl (C)	_AVYLSTC(Carbamidomethyl (C))KDSK_	AVYLSTC(1)KDSK		AVYLSTC(58)KDSK		0	1	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.548095703125	3	424.548189	1270.62274	1.0536	0.00044732	-3.3454	-0.0014203	-2.2918	-0.00097298	424.54688705748447	20.537	0.41429	20.537	20.477	20.891	0					21	8	5	0	0	0	0.33911	1	6551	6551		58.246	20.738	1	964530			6359	7894	3194	3221	6480	6480	342				-0.0017489875372120878
AVYQARPQLHK	11	Unmodified	_AVYQARPQLHK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;TRIM25|p.R155Ffs*32|1|0.58|ENSG00000121060|chr17:56913526-56913527|-/GCGCAAA|frameshift_variant;TRIM25|p.A216Rfs*8|1|0.11|ENSG00000121060|chr17:56908515-56908515|C/-|frameshift_variant;TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.58221435546875	3	437.582444	1309.7255	0.61669	0.00026985	-0.86476	-0.0003784	-0.24807	-0.00010855	437.5819214459909	20.562	0.28094	20.562	20.387	20.668	0					13	6	3	0	0	0	0.575	1	6395	6395		38.754	16.174	1	428380			6360	3210	3195	3222	6481	6481					0.08302974819935116
AVYREVLAVK	10	Unmodified	_AVYREVLAVK_					0	0	0			REV__ENSG00000187609|ENST00000340951|EXD3	REV__ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.23260498046875	3	383.232641	1146.67609	0.20128	7.7136E-05	-0.41263	-0.00015813	-0.21135	-8.0997E-05	383.232567596291	22.719	0.16315	22.719	22.614	22.777	0					6	3	2	0	0	0	0.65895	1	7741	7741		27.047	0	1	718330	+		6361	17126	3196	3223	6482	6482					0.10862266811113841
AVYSHVIQK	9	Unmodified	_AVYSHVIQK_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7958374023438	2	522.795466	1043.57638	0.7927	0.00041442	0.04724	2.4697E-05	0.83994	0.00043912	522.795447188506	22.444	0.11655	22.444	22.384	22.501	0					6	3	2	0	0	0	0.10915	1	6348	6348		77.318	31.366	1	166290			6362	3965	3197	3224	6483	6483					0.05633449197171103
AVYSHVIQK	9	Unmodified	_AVYSHVIQK_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7957153320312	2	522.795466	1043.57638	0.086133	4.503E-05	0.28482	0.0001489	0.37095	0.00019393	522.7956152020647	22.763	0.1706	22.763	22.676	22.846	0					7	4	2	0	0	0	0.048471	1	7447	7447		95.815	39.381	1	1184000			6363	3965	3197	3224	6484	6484					0.05633449197171103
AVYSHVIQK	9	Unmodified	_AVYSHVIQK_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.8659973144531	3	348.86607	1043.57638	0.4987	0.00017398	-0.4772	-0.00016648	0.021502	7.5013E-06	348.8658192824857	22.763	0.33624	22.763	22.633	22.969	0					14	8	2	0	0	0	0.50461	1	7450	7450		39.253	0	1	673710			6364	3965	3197	3224	6485	6485					0.05633449197171103
AVYSHVIQK	9	Unmodified	_AVYSHVIQK_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7957763671875	2	522.795466	1043.57638	-1.2982	-0.00067872	2.3611	0.0012344	1.0629	0.00055566	522.7965361180472	22.554	0.10053	22.554	22.505	22.605	0					4	2	2	0	0	0	0.21263	1	6748	6748		60.118	17.644	1	248450			6365	3965	3197	3224	6486	6486					0.05633449197171103
AVYTKMMTK	9	Unmodified	_AVYTKMMTK_					0	0	0		ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.1893005371094	3	358.189168	1071.54567	-0.061832	-2.2148E-05	-0.1444	-5.1721E-05	-0.20623	-7.3869E-05	358.1892008099829	23.692	0.16262	23.692	23.634	23.796	0					7	3	3	0	0	0	0.44593	1	8083	8083		61.691	27.519	1	714490			6366	5348	3198	3225	6487	6487					0.012762114962697524
AWAASAKVDP	10	Unmodified	_AWAASAKVDP_					0	0	0			REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.26190185546875	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.869	1	21.869	21.369	22.369	0								0	0	0	0.37702	1	6092	6092		32.812	0	1		+		6367	16295	3199	3226	6488	6488					0.006768834091303688
AWAFLSLFR	9	Unmodified	_AWAFLSLFR_					0	0	0		SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant;SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant;ENSG00000185313|ENST00000449082|SCN10A	SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant	SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3456420898438	2	555.808377	1109.6022	3.5526	0.0019745	-0.58754	-0.00032656	2.965	0.001648	555.8083352462354	14.686	0.4195	14.686	14.525	14.945	0					10	8	2	0	0	0	0.37197	1	3694	3694		44.117	3.3386	1	92648			6368	7073	3200	3227	6489	6489					0.051783434394792494
AWARARATGLQ	11	Unmodified	_AWARARATGLQ_					0	0	0		ENST00000264167.8_1_2:178257542-178257677:+|nuORF	ENST00000264167.8_1_2:178257542-178257677:+|nuORF	ENST00000264167.8_1_2:178257542-178257677:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.89202880859375	3	400.891389	1199.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.226	1	15.226	14.726	15.726	0								0	0	0	0.42918	1	3368	3368		30.569	1.0181	1				6369	8325	3201	3228	6490	6490					0.06049846097312184
AWARSKNPQ	9	Unmodified	_AWARSKNPQ_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2822875976562	2	529.280515	1056.54648	3.4525	0.0018273	-0.26842	-0.00014207	3.1841	0.0016853	529.2803393271311	35.662	0.61496	35.662	35.398	36.013	0					27	12	3	0	0	0	0.28897	1	13771	13771		51.193	51.193	1	14386000			6370	2718	3202	3229	6491	6491					0.02046510251852851
AWCTINTRA	9	Unmodified	_AWCTINTRA_					0	0	0		SETD4|p.V204I|1|0.39|ENSG00000185917|chr21:36045698-36045698|C/T|missense_variant	SETD4|p.V204I|1|0.39|ENSG00000185917|chr21:36045698-36045698|C/T|missense_variant	SETD4|p.V204I|1|0.39|ENSG00000185917|chr21:36045698-36045698|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2571411132812	2	518.255651	1034.49675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.23	1	16.23	15.73	16.73	0								0	0	0	0.32356	1	4357	4357		30.504	0	1				6371	22387	3203	3230	6492	6492					-0.019119407484595285
AWENVVKLK	9	Unmodified	_AWENVVKLK_					0	0	0			REV__OSBP2|p.R356W|1|0.27|ENSG00000184792|chr22:30870641-30870641|C/T|missense_variant	REV__OSBP2|p.R356W|1|0.27|ENSG00000184792|chr22:30870641-30870641|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8199462890625	2	543.818941	1085.62333	-0.19378	-0.00010538	0.94778	0.00051542	0.75399	0.00041004	543.8197491501973	27.313	0.1217	27.313	27.262	27.383	0					7	4	2	0	0	0	0.21263	1	8685	8685		60.118	7.1816	1	91636	+		6372	21328	3204	3231	6493	6493					0.08394308748324875
AWFLVNNNC	9	Unmodified	_AWFLVNNNC_					0	0	0		ENST00000576518.1_1_17:44055640-44101534:+|nuORF;ENST00000572440.1_1_17:44055640-44055811:+|nuORF	ENST00000576518.1_1_17:44055640-44101534:+|nuORF	ENST00000576518.1_1_17:44055640-44101534:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7533569335938	2	540.750201	1079.48585	1.9929	0.0010776	3.3054	0.0017874	5.2983	0.002865	540.7519380785258	26.517	0.41841	26.517	26.309	26.727	0					15	8	3	0	0	0	0.21116	1	9512	9512		60.294	3.5729	1	1181900			6373	10831	3205	3232	6494	6494					-0.0507134312274502
AWHIRLKQ	8	Unmodified	_AWHIRLKQ_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.3120727539062	2	526.311618	1050.60868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.454	1	15.454	14.954	15.954	0								0	0	0	1.7419	1	3365	3365		26.796	13.021	1				6374	1651	3206	3233	6495	6495					0.08540281390833115
AWLVLLVLK	9	Unmodified	_AWLVLLVLK_					0	0	0			REV__ENST00000374866.7_1_2:189926334-189927746:-|nuORF	REV__ENST00000374866.7_1_2:189926334-189927746:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.8529052734375	2	527.854796	1053.69504	0.92819	0.00048995	-2.829	-0.0014933	-1.9009	-0.0010034	527.8530999909259	39.23	0.10222	39.23	39.166	39.268	0					6	3	2	0	0	0	0.49003	1	15433	15433		33.516	3.0119	1	34119	+		6375	18697	3207	3234	6496	6496					0.17033848172832222
AWPEPILSL	9	Unmodified	_AWPEPILSL_					0	0	0		CATSPER4|p.K467Nfs*78|1|0.36|ENSG00000188782|chr1:26202519-26202519|A/-|frameshift_variant	CATSPER4|p.K467Nfs*78|1|0.36|ENSG00000188782|chr1:26202519-26202519|A/-|frameshift_variant	CATSPER4|p.K467Nfs*78|1|0.36|ENSG00000188782|chr1:26202519-26202519|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.285400390625	2	513.286943	1024.55933	0.013159	6.7541E-06	-3.5546	-0.0018246	-3.5415	-0.0018178	513.2853272854256	34.485	0.25235	34.485	34.4	34.652	0					11	6	3	0	0	0	0.45358	1	12858	12858		37.159	1.5408	1	154170			6376	383	3208	3235	6497	6497					0.04803528591401118
AWRQFLRSAQ	10	Unmodified	_AWRQFLRSAQ_					0	0	0		ENST00000381007.8_1_5:65008834-65017846:-|nuORF	ENST00000381007.8_1_5:65008834-65017846:-|nuORF	ENST00000381007.8_1_5:65008834-65017846:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.8409423828125	2	631.841271	1261.66799	0.19699	0.00012447	-1.7659	-0.0011158	-1.5689	-0.00099133	631.840076710794	38.5	0.16517	38.5	38.435	38.6	0					13	9	2	0	0	0	0.68774	1	12552	12552		23.523	2.6855	1	81423			6377	9106	3209	3236	6498	6498					0.04762132614382608
AWRRALPL	8	Unmodified	_AWRRALPL_					0	0	0		nc|ENSG00000013573|Q96FC9|DDX11	nc|ENSG00000013573|Q96FC9|DDX11	nc|ENSG00000013573|Q96FC9|DDX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.7999572753906	2	491.800886	981.587219	0.80168	0.00039427	-2.9581	-0.0014548	-2.1565	-0.0010606	491.79932496905974	40.434	0.13611	40.434	40.381	40.517	0					9	5	2	0	0	0	0.74117	1	15415	15415		28.254	0.37203	1	48107			6378	11418	3210	3237	6499	6499					0.09568896362122814
AWSGRPCLC	9	Unmodified	_AWSGRPCLC_					0	0	0		ENST00000468090.5_1_21:45181890-45182109:+|nuORF	ENST00000468090.5_1_21:45181890-45182109:+|nuORF	ENST00000468090.5_1_21:45181890-45182109:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7253723144531	2	496.725672	991.436791	-0.032759	-1.6272E-05	-0.74188	-0.00036851	-0.77464	-0.00038478	496.7251253169275	13.794	0.20155	13.794	13.704	13.906	0					6	4	2	0	0	0	0.51817	1	3454	3454		30.504	0	1	49745			6379	9806	3211	3238	6500	6500					-0.05926954683354779
AWVVYGVI	8	Unmodified	_AWVVYGVI_					0	0	0		tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7557067871094	2	453.757821	905.501089	-2.6221	-0.0011898	-0.92873	-0.00042142	-3.5508	-0.0016112	453.7570941420494	31.11	0.14422	31.11	31.02	31.164	0					6	4	2	0	0	0	0.77013	1	10692	10692		24.504	0.30126	1	33687			6380	22944	3212	3239	6501	6501					0.04455891736745343
AWWPFSSK	8	Unmodified	_AWWPFSSK_					0	0	0		SNAP47|p.A365Qfs*14|1|0.25|ENSG00000143740|chr1:227759450-227759450|C/-|frameshift_variant;ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1-2|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47	SNAP47|p.A365Qfs*14|1|0.25|ENSG00000143740|chr1:227759450-227759450|C/-|frameshift_variant	SNAP47|p.A365Qfs*14|1|0.25|ENSG00000143740|chr1:227759450-227759450|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7508239746094	2	504.750527	1007.4865	-0.0671	-3.3869E-05	0.34157	0.00017241	0.27447	0.00013854	504.7508095406403	14.922	0.078308	14.922	14.875	14.953	0					8	3	3	0	0	0	0.79719	1	3144	3144		18.324	0.062328	1	242470			6381	4577	3213	3240	6502	6502					-0.01694180411391244
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2980346679688	2	525.297507	1048.58046	0.67322	0.00035364	0.25459	0.00013374	0.92781	0.00048738	525.2973991403676	39.711	0.13085	39.711	39.639	39.77	0					11	7	2	0	0	0	0.21263	1	12879	12879		60.118	15.587	1	80055			6382	5186	3214	3241	6503	6503					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2976684570312	2	525.297507	1048.58046	0.096198	5.0533E-05	0.39609	0.00020807	0.49229	0.0002586	525.2976093407101	40.008	0.26989	40.008	39.908	40.178	0					24	10	3	0	0	0	0.048471	1	15229	15229		95.815	10.9	1	587640			6383	5186	3214	3241	6504	6504					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2963256835938	2	525.297507	1048.58046	0.58731	0.00030851	2.115	0.001111	2.7023	0.0014195	525.298252760521	39.805	0.088482	39.805	39.746	39.835	0					8	5	2	0	0	0	0.087861	1	13362	13362		82.241	27.464	1	38566			6384	5186	3214	3241	6505	6505					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2969360351562	2	525.297507	1048.58046	1.7748	0.00093229	-1.4299	-0.00075113	0.34486	0.00018115	525.2966453638912	39.971	0.23912	39.971	39.907	40.146	0					17	8	3	0	0	0	0.0406	1	15727	15727		98.629	43.853	1	439300			6385	5186	3214	3241	6506	6506					0.05811493900228015
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7659912109375	2	482.766178	963.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.568	1	31.568	31.068	32.068	0								0	0	0	0.28056	1	10154	10154		39.021	7.0666	1				6386	3538	3215	3242	6507	6507					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7654724121094	2	482.766178	963.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.939	1	31.939	31.439	32.439	0								0	0	0	0.21213	1	10294	10294		49.211	8.6382	1				6387	3538	3215	3242	6508	6508					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.76593017578125	2	482.766178	963.517802	-0.13504	-6.5193E-05	0.12584	6.0752E-05	-0.009199	-4.441E-06	482.76582348466843	31.887	0.86384	31.887	31.601	32.464	0					58	21	4	0	0	0	0.076399	1	11663	11663		85.909	45.131	1	476660			6388	3538	3215	3242	6509	6509					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7646789550781	2	482.766178	963.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.689	1	31.689	31.189	32.189	0								0	0	0	0.1476	1	10522	10522		60.404	23.375	1				6389	3538	3215	3242	6510	6510					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7655029296875	2	482.766178	963.517802	-0.57953	-0.00027978	0.16615	8.0211E-05	-0.41338	-0.00019957	482.76615384376487	31.921	0.71636	31.921	31.685	32.401	0					39	15	3	0	0	0	0.21025	2	12257	12056;12257		60.404	23.761	1	256830			6390	3538	3215	3242	6511;6512	6512					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.76507568359375	2	482.766178	963.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.649	1	31.649	31.149	32.149	0								0	0	0	0.1476	1	10923	10923		60.404	17.929	1				6391	3538	3215	3242	6513	6513					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7656555175781	2	482.766178	963.517802	2.4035	0.0011603	-2.6812	-0.0012944	-0.27766	-0.00013404	482.76449164803756	31.985	1.071	31.985	31.586	32.657	0					47	21	3	0	0	0	0.076399	1	11962	11962		85.909	27.127	1	695980			6392	3538	3215	3242	6514	6514					0.03458392622712836
AYAQEIQKL	9	Unmodified	_AYAQEIQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2929077148438	2	532.292756	1062.57096	0.12368	6.5832E-05	0.62034	0.0003302	0.74402	0.00039604	532.2933268583322	33.728	0.61316	33.728	33.568	34.181	0					21	16	2	0	0	0	0.30841	1	12470	12470		49.536	3.0793	1	571930			6393	5752	3216	3243	6515	6515					0.04217725614716983
AYARKQSVK	9	Unmodified	_AYARKQSVK_					0	0	0		ENSG00000188674|ENST00000341287|C2orf80	ENSG00000188674|ENST00000341287|C2orf80	ENSG00000188674|ENST00000341287|C2orf80	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8733215332031	3	350.873336	1049.59818	-0.046024	-1.6149E-05	-0.19725	-6.9211E-05	-0.24328	-8.536E-05	350.8732744073301	15.605	0.36813	15.605	15.497	15.865	0					15	7	4	0	0	0	0.35045	1	4140	4140		52.937	12.879	1	1765500			6394	7264	3217	3244	6516	6516					0.07536253945750104
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2776489257812	2	541.276909	1080.53927	0.10692	5.7875E-05	1.232	0.00066686	1.3389	0.00072473	541.2775378940163	32.465	0.37424	32.465	32.342	32.716	0					25	15	3	0	0	0	0.03984	1	10817	10817		99.375	38.403	1	149840			6395	2709	3218	3245	6517	6517					0.0022177765142714634
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.277099609375	2	541.276909	1080.53927	2.064	0.0011172	-1.5701	-0.00084986	0.49394	0.00026736	541.2758664068814	32.571	0.71555	32.571	32.304	33.019	0					39	14	5	0	0	0	0.028876	1	12281	12281		110.12	44.317	1	3244300			6396	2709	3218	3245	6518	6518					0.0022177765142714634
AYAVVPFL	8	Unmodified	_AYAVVPFL_					0	0	0			REV__ENSG00000116649|ENST00000376957|SRM	REV__ENSG00000116649|ENST00000376957|SRM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.25054931640625	2	440.252372	878.49019	-1.0404	-0.00045802	-4.1739	-0.0018376	-5.2142	-0.0022956	440.25042883161746	31.526	0.13897	31.526	31.477	31.616	0					9	5	2	0	0	0	0.63381	1	10462	10462		43.626	8.4253	1	47601	+		6397	14150	3219	3246	6519	6519					0.046084893624765755
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.847900390625	3	368.848856	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.574	1	34.574	34.074	35.074	0								0	0	0	0.38879	1	11309	11309		33.922	8.3476	1		+		6398	12400	3220	3247	6520	6520					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8479919433594	3	368.848856	1103.52474	0.46949	0.00017317	-1.841	-0.00067907	-1.3716	-0.0005059	368.8482602185689	33.803	2.7147	33.803	33.609	36.323	0					247	71	6	0	0	0	0.60281	2	12988	12988;13305		33.922	6.0394	1	67176000	+		6399	12400	3220	3247	6521;6522	6521					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.84796142578125	3	368.848856	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.502	1	37.502	37.002	38.002	0								0	0	0	0.41137	1	14221	14221		27.047	0	1		+		6400	12400	3220	3247	6523	6523					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8479919433594	3	368.848856	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.863	1	37.863	37.363	38.363	0								0	0	0	0.41137	1	14381	14381		27.047	0	1		+		6401	12400	3220	3247	6524	6524					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.84771728515625	3	368.848856	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.317	1	49.317	48.817	49.817	0								0	0	0	0.39264	1	17812	17812		32.751	1.2207	1		+		6402	12400	3220	3247	6525	6525					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.84796142578125	3	368.848856	1103.52474	-0.70284	-0.00025924	-1.3629	-0.00050272	-2.0658	-0.00076196	368.84846781683257	33.625	1.3013	33.625	33.526	34.827	0					134	54	4	0	0	0	0.60281	1	11556	11556		33.922	13.084	1	13448000	+		6403	12400	3220	3247	6526	6526					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8479919433594	3	368.848856	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.225	1	40.225	39.725	40.725	0								0	0	0	0.4201	1	15848	15848		22.58	1.7425	1		+		6404	12400	3220	3247	6527	6527					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8479919433594	3	368.848856	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.136	1	41.136	40.636	41.636	0								0	0	0	0.39264	1	16174	16174		32.751	7.3004	1		+		6405	12400	3220	3247	6528	6528					-0.022883392873836783
AYDGNLHTIT	10	Unmodified	_AYDGNLHTIT_					0	0	0			REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	REV__CDH4|p.R666H|1|0.12|ENSG00000179242|chr20:61928415-61928415|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.7681274414062	2	552.769645	1103.52474	-1.2349	-0.00068262	-0.87505	-0.0004837	-2.11	-0.0011663	552.7692904911172	33.567	0.84061	33.567	33.479	34.32	0					59	24	5	0	0	0	0.46989	1	11784	11784		36.447	0	1	3422900	+		6406	12400	3220	3247	6529	6529					-0.022883392873836783
AYEAAACYKAP	11	Unmodified	_AYEAAACYKAP_					0	0	0			REV__ENST00000305963.2_1_X:135044472-135044568:-|nuORF	REV__ENST00000305963.2_1_X:135044472-135044568:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.268798828125	2	579.268424	1156.5223	1.4453	0.00083723	-1.2386	-0.00071746	0.20677	0.00011977	579.267627011077	36.249	0.16161	36.249	36.134	36.295	0					7	4	2	0	0	0	0.72154	1	13668	13668		25.574	3.6142	1	55434	+		6407	18241	3221	3248	6530	6530					-0.04970511016699675
AYENKGKIAQ	10	Unmodified	_AYENKGKIAQ_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.302978515625	2	561.301113	1120.58767	1.8006	0.0010107	1.4428	0.00080985	3.2434	0.0018205	561.3017703558555	32.162	0.21886	32.162	32.102	32.321	0					9	4	3	0	0	0	0.23612	1	12112	12112		75.043	32.179	1	665790			6408	1059	3222	3249	6531	6531					0.03220226500661738
AYFKQSSVF	9	Unmodified	_AYFKQSSVF_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2;TET2|p.M695Tfs*4|1|0.41|ENSG00000168769|chr4:105236026-105236029|TGTC/-|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7738037109375	2	538.7742	1075.53385	0.3002	0.00016174	-0.65961	-0.00035538	-0.35941	-0.00019364	538.7739044144577	37.771	0.13729	37.771	37.708	37.846	0					6	4	2	0	0	0	0.17854	1	14796	14796		64.207	11.271	1	69941			6409	6121	3223	3250	6532	6532					-0.0008994593106308457
AYGASKTF	8	Unmodified	_AYGASKTF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.7134704589844	2	422.713611	843.412668	-1.1816	-0.00049949	0.96235	0.0004068	-0.21928	-9.2692E-05	422.713915484839	23.966	0.2171	23.966	23.879	24.096	0					18	7	3	0	0	0	0.25143	1	7263	7263		98.629	32.2	1	431160			6410	3782	3224	3251	6533	6533					-0.01530148573704082
AYGASKTF	8	Unmodified	_AYGASKTF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7134094238281	2	422.713611	843.412668	-0.21029	-8.8893E-05	-0.31817	-0.00013449	-0.52846	-0.00022339	422.71341961205593	24.222	0.31432	24.222	24.113	24.427	0					8	6	2	0	0	0	0.25143	1	8436	8436		98.629	39.847	1	297990			6411	3782	3224	3251	6534	6534					-0.01530148573704082
AYGASKTF	8	Unmodified	_AYGASKTF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7135314941406	2	422.713611	843.412668	-2.5932	-0.0010962	2.0253	0.00085614	-0.56788	-0.00024005	422.71449356567956	24.031	0.12886	24.031	23.949	24.078	0					6	3	2	0	0	0	0.25873	1	7439	7439		96.19	16.739	1	93255			6412	3782	3224	3251	6535	6535					-0.01530148573704082
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;nc|ENSG00000110799|P04275-2|VWF;VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.7518005371094	2	448.75307	895.491587	0.62051	0.00027846	-0.92908	-0.00041693	-0.30856	-0.00013847	448.75232480362877	40.136	0.13346	40.136	40.075	40.208	0					8	5	2	0	0	0	0.4723	1	15312	15312		62.978	17.026	1	33743			6413	2643;8613	3225	3252	6536	6536					0.03966123451232306
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;nc|ENSG00000110799|P04275-2|VWF;VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.7530517578125	2	448.75307	895.491587	0.64352	0.00028878	-0.97147	-0.00043595	-0.32795	-0.00014717	448.7526339272549	40.115	0.12676	40.115	40.048	40.175	0					7	4	2	0	0	0	0.29779	1	15820	15820		83.287	28.523	1	126300			6414	2643;8613	3225	3252	6537	6537					0.03966123451232306
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;nc|ENSG00000110799|P04275-2|VWF;VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.7530517578125	2	448.75307	895.491587	-0.40111	-0.00018	0.40009	0.00017954	-0.001013	-4.5458E-07	448.7532867155759	40.072	0.19334	40.072	39.971	40.164	0					6	4	2	0	0	0	0.24777	1	15893	15893		105.27	42.29	1	81456			6415	2643;8613	3225	3252	6538	6538					0.03966123451232306
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;nc|ENSG00000110799|P04275-2|VWF;VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.7528076171875	2	448.75307	895.491587	0.86916	0.00039004	-0.86993	-0.00039038	-0.00076964	-3.4538E-07	448.7524513141391	40.078	0.3515	40.078	39.957	40.308	0					12	8	3	0	0	0	0.29779	1	15888	15888		83.287	38.756	1	153030			6416	2643;8613	3225	3252	6539	6539					0.03966123451232306
AYGKDFHLI	9	Unmodified	_AYGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2828369140625	2	532.282192	1062.54983	1.0394	0.00055324	0.070803	3.7687E-05	1.1102	0.00059092	532.2821825087442	36.431	0.26432	36.431	36.36	36.625	0					16	7	3	0	0	0	0.35021	1	14182	14182		45.972	8.8131	1	195740			6417	7535	3226	3253	6540	6540					0.021057603058579843
AYGKDFHLI	9	Unmodified	_AYGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2825317382812	2	532.282192	1062.54983	0.71979	0.00038313	0.30287	0.00016121	1.0227	0.00054434	532.2824335229011	36.388	0.6134	36.388	36.233	36.846	0					25	12	3	0	0	0	0.14603	1	14123	14123		68.787	19.345	1	887410			6418	7535	3226	3253	6541	6541					0.021057603058579843
AYGKDFHLI	9	Unmodified	_AYGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2823486328125	2	532.282192	1062.54983	1.7332	0.00092256	-0.48454	-0.00025791	1.2487	0.00066465	532.281741490577	36.371	0.2135	36.371	36.265	36.479	0					8	4	2	0	0	0	0.25716	1	14140	14140		54.776	12.302	1	1266700			6419	7535	3226	3253	6542	6542					0.021057603058579843
AYGKSPSL	8	Unmodified	_AYGKSPSL_					0	0	0		nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000487787.5_1_1:202275897-202288332:+|nuORF;nc|ENSG00000133067|Q9HBX8-1|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.7215270996094	2	411.721436	821.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.41	1	21.41	20.91	21.91	0								0	0	0	1.7419	1	6202	6202		51.335	7.2187	1				6420	3834	3227	3254	6543	6543					0.010461379433309048
AYGLTQGKM	9	Oxidation (M)	_AYGLTQGKM(Oxidation (M))_		AYGLTQGKM(1)		AYGLTQGKM(77)	0	0	1			REV__RBM28|p.S539T|1|0.29|ENSG00000106344|chr7:128318055-128318055|A/T|missense_variant	REV__RBM28|p.S539T|1|0.29|ENSG00000106344|chr7:128318055-128318055|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7430725097656	2	492.744585	983.474617	-2.6135	-0.0012878	-1.0483	-0.00051654	-3.6618	-0.0018044	492.7440410172864	28.74	0.38366	28.74	28.628	29.012	0					31	9	4	0	0	0	0.1115	1	9552	9552		76.774	10.345	1	1961200	+		6421	21449	3228	3255	6544	6544		774			-0.017781652168764595
AYGLWSKKE	9	Unmodified	_AYGLWSKKE_					0	0	0			REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.1939392089844	3	361.194075	1080.5604	3.1106	0.0011235	-1.3361	-0.00048258	1.7745	0.00064094	361.19284709553506	27.484	0.27158	27.484	27.373	27.645	0					10	5	2	0	0	0	0.41113	1	9857	9857		40.778	0.71999	1	1026600	+		6422	20906	3229	3256	6545	6545					0.023337429602861448
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		ENST00000514938.1_1_22:50943733-50944613:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2265625	2	479.226885	956.439217	0.66286	0.00031766	-1.3045	-0.00062514	-0.64161	-0.00030748	479.22626774033336	36.174	0.39262	36.174	36.079	36.472	0					21	11	3	0	0	0	0.61433	1	14075	14075		46.766	2.3892	1	298550			6423	1991	3230	3257	6546	6546					-0.04074459682385623
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF;nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|474|22.42|0.3|6.23|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2481689453125	2	518.248349	1034.48214	0.051295	2.6584E-05	0.83528	0.00043288	0.88658	0.00045947	518.2486871909563	29.402	0.21376	29.402	29.313	29.527	0					10	5	2	0	0	0	0.35021	1	10485	10485		45.972	3.5761	1	397080			6424	524	3231	3258	6547	6547					-0.03371689624964347
AYINKVEEL	9	Unmodified	_AYINKVEEL_					0	0	0		DBI|p.K82N|1|0.47|ENSG00000155368|chr2:119372300-119372300|G/T|missense_variant;DBI|p.Y85Ifs*19|1|0.22|ENSG00000155368|chr2:119372300-119372301|-/A|frameshift_variant;ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	DBI|p.K82N|1|0.47|ENSG00000155368|chr2:119372300-119372300|G/T|missense_variant	DBI|p.K82N|1|0.47|ENSG00000155368|chr2:119372300-119372300|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7928466796875	2	539.792589	1077.57063	1.957	0.0010564	-0.31463	-0.00016984	1.6424	0.00088654	539.7926301021205	36.357	0.29979	36.357	36.172	36.472	0					12	8	2	0	0	0	0.032052	1	14158	14158		107.01	21.847	1	467590			6425	742	3232	3259	6548	6548					0.03494305894855643
AYINKVEEL	9	Unmodified	_AYINKVEEL_					0	0	0		DBI|p.K82N|1|0.47|ENSG00000155368|chr2:119372300-119372300|G/T|missense_variant;DBI|p.Y85Ifs*19|1|0.22|ENSG00000155368|chr2:119372300-119372301|-/A|frameshift_variant;ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	DBI|p.K82N|1|0.47|ENSG00000155368|chr2:119372300-119372300|G/T|missense_variant	DBI|p.K82N|1|0.47|ENSG00000155368|chr2:119372300-119372300|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7930908203125	2	539.792589	1077.57063	3.4437	0.0018589	-2.3806	-0.001285	1.0631	0.00057387	539.791375853782	36.305	0.56063	36.305	36.2	36.761	0					17	11	2	0	0	0	0.023928	1	14085	14085		115.49	11.437	1	1762900			6426	742	3232	3259	6549	6549					0.03494305894855643
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.79547119140625	2	510.795466	1019.57638	-0.0054486	-2.7831E-06	-0.17546	-8.9625E-05	-0.18091	-9.2408E-05	510.79532416231797	37.215	0.32874	37.215	37.095	37.423	0					19	9	4	0	0	0	0.07136	1	14080	14080		87.696	7.7572	1	411260			6427	4278	3233	3260	6550	6550					0.06737449197191836
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.79547119140625	2	510.795466	1019.57638	3.069	0.0015676	-3.6357	-0.0018571	-0.5667	-0.00028947	510.79342500054474	37.145	0.45657	37.145	36.994	37.45	0					18	9	4	0	0	0	0.056004	1	14506	14506		93.143	16.297	1	1260700			6428	4278	3233	3260	6551	6551					0.06737449197191836
AYIQGLKEK	9	Unmodified	_AYIQGLKEK_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8046264648438	2	525.303124	1048.5917	0.15573	8.1803E-05	0.41601	0.00021853	0.57174	0.00030034	525.8047334639892	27.318	0.16906	27.318	27.186	27.355	0					5	3	2	0	0	0	0.36892	1	9888	9888		44.377	7.2181	1	100970			6429	1201	3234	3261	6552	6552					0.06934315994362805
AYKEEANTI	9	Unmodified	_AYKEEANTI_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7583618164062	2	519.758746	1037.50294	0.59168	0.00030753	-0.26796	-0.00013927	0.32372	0.00016826	519.7585939442682	23.619	0.093332	23.619	23.561	23.655	0					5	3	2	0	0	0	0.38666	1	6856	6856		42.864	0	1	45879			6430	6540	3235	3262	6553	6553					-0.014311440359733751
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.798828125	2	545.798206	1089.58186	1.1976	0.00065365	-0.033531	-1.8301E-05	1.1641	0.00063535	545.7981523041973	15.808	0.084321	15.808	15.774	15.858	0					5	3	2	0	0	0	0.056004	1	3507	3507		93.143	13.431	1	134680			6431	2707	3236	3263	6554	6554					0.04065127988997119
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.20111083984375	3	364.201229	1089.58186	0.74281	0.00027053	-0.93846	-0.00034179	-0.19565	-7.1256E-05	364.20083167895575	16.111	0.31169	16.111	16.064	16.375	0					17	7	4	0	0	0	0.50461	1	4311	4311		56.721	21.569	1	807560			6432	2707	3236	3263	6555	6555					0.04065127988997119
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7994995117188	2	545.798206	1089.58186	0.41267	0.00022524	1.2936	0.00070603	1.7062	0.00093127	545.7987359623924	16.143	0.18675	16.143	16.007	16.194	0					11	4	4	0	0	0	0.023928	1	4304	4304		115.49	30.333	1	1532600			6433	2707	3236	3263	6556	6556					0.04065127988997119
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7996826171875	2	545.798206	1089.58186	-0.23629	-0.00012896	1.0096	0.00055103	0.77331	0.00042207	545.7990037620631	15.834	0.090508	15.834	15.775	15.865	0					5	3	2	0	0	0	0.18416	1	3689	3689		63.534	25.722	1	109150			6434	2707	3236	3263	6557	6557					0.04065127988997119
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7984008789062	2	545.798206	1089.58186	0.3313	0.00018082	-0.011744	-6.41E-06	0.31955	0.00017441	545.7982670223471	16.105	0.1667	16.105	15.996	16.162	0					5	3	2	0	0	0	0.1424	1	4547	4547		69.628	9.5094	1	682000			6435	2707	3236	3263	6558	6558					0.04065127988997119
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.799072265625	2	545.798206	1089.58186	3.7563	0.0020502	-1.7061	-0.00093121	2.0502	0.001119	545.7972171553273	16.072	0.11772	16.072	16.014	16.131	0					6	2	3	0	0	0	0.056004	1	4386	4386		93.143	23.516	1	1368800			6436	2707	3236	3263	6559	6559					0.04065127988997119
AYKKTSETL	9	Unmodified	_AYKKTSETL_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7852783203125	2	520.784764	1039.55498	0.69641	0.00036268	-0.30754	-0.00016016	0.38887	0.00020252	520.7847958068485	17.903	0.12743	17.903	17.83	17.958	0					5	3	2	0	0	0	0.41113	1	4377	4377		40.778	13.982	1	122900			6437	1564	3237	3264	6560	6560					0.03678019377821329
AYKKTSETL	9	Unmodified	_AYKKTSETL_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7848510742188	2	520.784764	1039.55498	0.071287	3.7125E-05	0.14883	7.7509E-05	0.22012	0.00011463	520.7847730887294	18.206	0.17968	18.206	18.114	18.294	0					7	4	2	0	0	0	0.012231	1	5288	5288		136.27	78.038	1	1100600			6438	1564	3237	3264	6561	6561					0.03678019377821329
AYKKTSETL	9	Unmodified	_AYKKTSETL_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7849731445312	2	520.784764	1039.55498	-1.3393	-0.00069749	2.1252	0.0011068	0.78589	0.00040928	520.7856293379821	17.995	0.10921	17.995	17.941	18.05	0					4	2	2	0	0	0	0.10915	1	4619	4619		77.318	40.289	1	245560			6439	1564	3237	3264	6562	6562					0.03678019377821329
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7728271484375	2	534.771657	1067.52876	0.56012	0.00029954	0.72086	0.00038549	1.281	0.00068503	534.7720474010664	34.953	0.43992	34.953	34.679	35.119	0					37	19	3	0	0	0	0.36892	1	11383	11383		44.377	10.205	1	117030			6440	1407	3238	3265	6563	6563					-0.0023024979368528875
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2734985351562	2	534.771657	1067.52876	-0.58841	-0.00031466	1.2447	0.00066566	0.65634	0.00035099	534.7724185959095	34.98	0.38741	34.98	34.743	35.131	0					38	17	3	0	0	0	0.4966	1	11765	11765		32.812	2.4947	1	157710			6441	1407	3238	3265	6564	6564					-0.0023024979368528875
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7725219726562	2	534.771657	1067.52876	1.7918	0.00095823	-0.57523	-0.00030761	1.2166	0.00065061	534.7712298479753	35.153	0.57376	35.153	34.892	35.466	0					49	16	4	0	0	0	0.14578	1	13539	13539		68.846	19.31	1	867550			6442	1407	3238	3265	6565	6565					-0.0023024979368528875
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7721557617188	2	534.771657	1067.52876	-1.3448	-0.00071915	2.2769	0.0012176	0.93211	0.00049847	534.7728343923511	34.949	0.55865	34.949	34.595	35.153	0					37	18	3	0	0	0	0.13726	1	12361	12361		70.816	28.42	1	247790			6443	1407	3238	3265	6566	6566					-0.0023024979368528875
AYLDSTERF	9	Unmodified	_AYLDSTERF_					0	0	0		CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant;CUL5|p.N565Ifs*18|1|0.28|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5	CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant	CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2642211914062	2	551.264196	1100.51384	1.6439	0.00090624	-1.2956	-0.00071424	0.34828	0.00019199	551.26361245239	36.205	0.25322	36.205	36.141	36.394	0					13	7	3	0	0	0	0.11898	1	14096	14096		75.043	27.386	1	301810			6444	718	3239	3266	6567	6567					-0.03239741661673179
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7536010742188	2	540.753464	1079.49238	1.0072	0.00054462	-0.29709	-0.00016065	0.71007	0.00038397	540.7531462552747	35.02	0.26596	35.02	34.936	35.202	0					22	11	3	0	0	0	0.1236	1	11463	11463		73.975	21.676	1	442210			6445	2674	3240	3267	6568	6568					-0.0441912669039084
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7539672851562	2	540.753464	1079.49238	0.28047	0.00015166	0.5954	0.00032196	0.87587	0.00047363	540.7538080426058	35.301	0.45906	35.301	35.181	35.64	0					33	12	4	0	0	0	0.013383	1	13214	13214		133.81	59.296	1	2204700			6446	2674	3240	3267	6569	6569					-0.0441912669039084
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7542114257812	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.07	1	35.07	34.57	35.57	0								0	0	0	0.15865	1	11853	11853		57.811	11.859	1				6447	2674	3240	3267	6570	6570					-0.0441912669039084
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7542724609375	2	540.753464	1079.49238	0.30958	0.00016741	0.42084	0.00022757	0.73042	0.00039498	540.7537008914412	35.279	0.36905	35.279	35.202	35.571	0					24	10	4	0	0	0	0.036372	1	13650	13650		102.77	31.957	1	728250			6448	2674	3240	3267	6571	6571					-0.0441912669039084
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2721557617188	2	539.271824	1076.5291	0.2528	0.00013633	0.68907	0.00037159	0.94187	0.00050792	539.2721394161645	42.423	0.31057	42.423	42.337	42.647	0					34	17	3	0	0	0	0.0406	1	16067	16067		98.629	50.714	1	359110			6449	1202	3241	3268	6572	6572					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2725830078125	2	539.271824	1076.5291	-0.12958	-6.9881E-05	2.234	0.0012047	2.1044	0.0011348	539.2729259906582	42.211	0.15251	42.211	42.137	42.289	0					13	9	3	0	0	0	0.30951	2	13934	13934;13938		49.442	3.4896	1	72631			6450	1202	3241	3268	6573;6574	6573					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2723388671875	2	539.271824	1076.5291	1.9437	0.0010482	-1.0197	-0.00054992	0.92392	0.00049824	539.2711603079979	42.365	0.35658	42.365	42.284	42.64	0					37	18	3	0	0	0	0.0406	1	16616	16616		98.629	29.843	1	587490			6451	1202	3241	3268	6575	6575					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2713012695312	2	539.271824	1076.5291	0.30233	0.00016304	-0.30221	-0.00016297	0.00011815	6.3716E-08	539.270926078321	42.378	0.12769	42.378	42.314	42.442	0					9	6	2	0	0	0	0.30951	1	16636	16636		49.442	7.0454	1	68216			6452	1202	3241	3268	6576	6576					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2723388671875	2	539.271824	1076.5291	2.0635	0.0011128	-1.542	-0.00083158	0.52151	0.00028123	539.2708443746918	42.339	0.30115	42.339	42.257	42.559	0					13	8	2	0	0	0	0.035062	1	16883	16883		104.06	56.399	1	481230			6453	1202	3241	3268	6577	6577					-0.006108300738333128
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2793579101562	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.583	1	41.583	41.083	42.083	0								0	0	0	0.00016232	1	16550	16550		132.76	39.562	1				6454	4309	3242	3269	6578	6578					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2794799804688	2	567.279315	1132.54408	3.4708	0.0019689	-1.1516	-0.00065328	2.3192	0.0013156	567.2777399393025	41.592	0.26877	41.592	41.506	41.775	0					23	7	5	0	0	0	0.04067	1	16542	16542		98.582	38.288	1	546540			6455	4309	3242	3269	6579	6579					-0.01689382996482891
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7639770507812	2	527.763832	1053.51311	0.55059	0.00029058	-0.053338	-2.815E-05	0.49726	0.00026243	527.7637102543899	33.736	0.40268	33.736	33.652	34.055	0					46	16	4	0	0	0	0.00090508	1	10987	10987		183.89	89.888	1	3890400			6456	2554	3243	3270	6580	6580					-0.011505363107289668
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7640380859375	2	527.763832	1053.51311	0.10628	5.6093E-05	0.11888	6.2741E-05	0.22517	0.00011883	527.7637868874339	33.996	0.90295	33.996	33.869	34.772	0					64	23	5	0	0	0	0.0031383	1	12611	12611		167.82	80.07	1	17703000			6457	2554	3243	3270	6581	6581					-0.011505363107289668
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7642822265625	2	527.763832	1053.51311	0.51442	0.00027149	0.1919	0.00010128	0.70633	0.00037277	527.7639186958969	33.805	0.40702	33.805	33.711	34.118	0					45	15	4	0	0	0	0.015835	1	11347	11347		128.86	54.886	1	3016400			6458	2554	3243	3270	6582	6582					-0.011505363107289668
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7640991210938	2	527.763832	1053.51311	0.28501	0.00015042	-0.043812	-2.3123E-05	0.24119	0.00012729	527.7636872987255	33.989	0.98069	33.989	33.851	34.832	0					65	24	5	0	0	0	0.0031383	3	13044	13044;13215;13396		167.82	68.449	1	20517000			6459	2554	3243	3270	6583;6584;6585	6583					-0.011505363107289668
AYLKAIVLF	9	Unmodified	_AYLKAIVLF_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.324462890625	2	519.323328	1036.6321	0.92652	0.00048117	0.61614	0.00031998	1.5427	0.00080114	519.3234924188586	53.687	0.15048	53.687	53.636	53.786	0					10	9	2	0	0	0	0.56424	1	19588	19588		25.45	0	1	86980			6460	6667;3192	3244	3271	6586	6586					0.11525282384764068
AYLKGYVY	8	Unmodified	_AYLKGYVY_					0	0	0		ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.75994873046875	2	488.760561	975.506569	-2.8931	-0.001414	1.4637	0.0007154	-1.4294	-0.00069861	488.7612491968427	28.236	0.70361	28.236	27.773	28.477	0					31	17	3	0	0	0	0.6282	1	9272	9272		44.531	44.531	1	1000100			6461	5414	3245	3272	6587	6587					0.01783570528561995
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.8043823242188	2	535.803291	1069.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.395	1	48.395	47.895	48.895	0								0	0	0	0.17378	1	18336	18336		57.811	7.7867	1				6462	1402	3246	3273	6588	6588					0.06001735714221468
AYLNKVELE	9	Unmodified	_AYLNKVELE_					0	0	0		ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENSG00000170477|ENST00000551956|KRT4;CON__P19013	ENST00000450021.1_1_2:183936291-183936849:-|nuORF	ENST00000450021.1_1_2:183936291-183936849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.792724609375	2	539.792589	1077.57063	0.92518	0.0004994	-0.21904	-0.00011824	0.70613	0.00038116	539.7925613265861	36.115	0.18071	36.115	36.055	36.236	0					14	8	2	0	0	0	0.07136	1	11837	11837		87.696	0	1	232200			6463	9643	3247	3274	6589	6589					0.03494305894832905
AYLQQQQQA	9	Unmodified	_AYLQQQQQA_					0	0	0			REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2718505859375	2	539.269813	1076.52507	3.4223	0.0018455	0.9278	0.00050034	4.3501	0.0023459	539.2703273423627	42.335	0.50112	42.335	42.198	42.699	0					27	13	3	0	0	0	0.14734	1	16873	16873		68.485	15.548	1	1276900	+		6464	16996	3248	3275	6590	6590					-0.010129195675290248
AYLSGMLRF	9	Unmodified	_AYLSGMLRF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.27880859375	2	529.278595	1056.54264	3.4536	0.0018279	-1.967	-0.0010411	1.4866	0.00078683	529.2773907736243	50.53	0.096016	50.53	50.501	50.597	0					10	5	2	0	0	0	0.10506	1	19913	19913		62.107	19.711	1	74280			6465	6034	3249	3276	6591	6591					0.016627044337838015
AYLSKAMEI	9	Unmodified	_AYLSKAMEI_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2709350585938	2	513.270435	1024.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.605	1	38.605	38.105	39.105	0								0	0	0	0.22284	1	12584	12584		47.657	3.5405	1				6466	3397	3250	3277	6592	6592					0.015035784770134342
AYLSKAMEI	9	Unmodified	_AYLSKAMEI_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2704467773438	2	513.270435	1024.52632	0.013206	6.7783E-06	-0.032321	-1.6589E-05	-0.019115	-9.811E-06	513.2705983888633	38.945	0.26788	38.945	38.863	39.131	0					19	10	3	0	0	0	0.047855	1	14803	14803		96.034	2.8381	1	255710			6467	3397	3250	3277	6593	6593					0.015035784770134342
AYLTLTSRM	9	Unmodified	_AYLTLTSRM_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant;RIF1|p.N245Kfs*2|1|0.44|ENSG00000080345|chr2:151422985-151422986|-/A|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.281494140625	2	528.281334	1054.54812	0.10787	5.6985E-05	1.1501	0.00060756	1.2579	0.00066455	528.2818252230198	39.31	0.12586	39.31	39.245	39.371	0					6	4	2	0	0	0	0.048471	1	14957	14957		95.815	42.878	1	78576			6468	1637	3251	3278	6594	6594					0.023023832256058085
AYLVYTDRL	9	Unmodified	_AYLVYTDRL_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3009643554688	2	557.300581	1112.58661	3.4986	0.0019498	-3.5349	-0.00197	-0.036276	-2.0216E-05	557.2988766404399	41.647	0.27975	41.647	41.465	41.745	0					11	7	2	0	0	0	0.20551	1	16598	16598		60.972	5.4677	1	99636			6469	4474	3252	3279	6595	6595					0.03482012131757983
AYMDLPSMK	9	Unmodified	_AYMDLPSMK_					0	0	0			REV__ENST00000573989.1_1_17:7834648-7835228:-|nuORF	REV__ENST00000573989.1_1_17:7834648-7835228:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.249267578125	2	528.248646	1054.48274	1.7483	0.00092352	-0.94727	-0.00050039	0.80101	0.00042313	528.2476895179234	30.229	0.32759	30.229	30.136	30.464	0					15	7	3	0	0	0	0.26904	1	11289	11289		53.351	3.9099	1	468220	+		6470	20400	3253	3280	6596	6596					-0.04232354291775664
AYMPASIIT	9	Unmodified	_AYMPASIIT_					0	0	0		FOXK1|p.V503I|1|0.26|ENSG00000164916|chr7:4759406-4759406|G/A|missense_variant	FOXK1|p.V503I|1|0.26|ENSG00000164916|chr7:4759406-4759406|G/A|missense_variant	FOXK1|p.V503I|1|0.26|ENSG00000164916|chr7:4759406-4759406|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.75152587890625	2	483.751879	965.489204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.436	1	41.436	40.936	41.936	0								0	0	0	0.32356	1	14606	14606		30.504	1.3541	1				6471	11144	3254	3281	6597	6597					0.0050790693126145925
AYNHCLEEFT	10	Unmodified	_AYNHCLEEFT_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.7606811523438	2	613.760963	1225.50737	0.97845	0.00060053	-1.0674	-0.00065511	-0.088918	-5.4574E-05	613.7604213626335	37.243	1.1931	37.243	36.172	37.365	0					76	35	3	0	0	0	0.61187	1	14368	14368		32.812	3.6424	1	385280	+		6472	14709	3255	3282	6598	6598					-0.0963600288471298
AYNNVKACL	9	Carbamidomethyl (C)	_AYNNVKAC(Carbamidomethyl (C))L_	AYNNVKAC(1)L		AYNNVKAC(56)L		0	1	0		nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.76318359375	2	526.763309	1051.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.632	1	28.632	28.132	29.132	0								0	0	0	0.16876	1	9529	9529		55.504	9.5523	1				6473	3382	3256	3283	6599	6599	136				-0.011630739512838772
AYNPNTQTF	9	Unmodified	_AYNPNTQTF_					0	0	0		LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant;ENSG00000174405|ENST00000442234|LIG4	LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant	LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.74609375	2	528.243264	1054.47197	0.21555	0.00011386	1.1732	0.00061972	1.3887	0.00073358	528.2437026750944	33.864	0.23184	33.864	33.777	34.009	0					12	9	2	0	0	0	0.27123	1	11388	11388		53.089	7.1167	1	68019			6474	6487	3257	3284	6600	6600					-0.05308297350211433
AYNQKVDLF	9	Unmodified	_AYNQKVDLF_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2843627929688	2	549.284931	1096.55531	1.8375	0.0010093	-0.29796	-0.00016366	1.5395	0.00084565	549.2844518579061	38.91	0.30159	38.91	38.778	39.079	0					11	6	2	0	0	0	0.42902	1	15380	15380		39.253	2.0937	1	100840			6475	3563	3258	3285	6601	6601					0.010894390976545765
AYNVHVLD	8	Unmodified	_AYNVHVLD_					0	0	0			REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7349853515625	2	465.737617	929.460681	-1.1483	-0.00053482	-4.4121	-0.0020549	-5.5604	-0.0025897	465.7355882157536	32.964	0.10294	32.964	32.9	33.003	0					4	2	2	0	0	0	0.66372	1	12580	12580		38.806	3.1879	1	49121	+		6476	20032	3259	3286	6602	6602					-0.006870746536719707
AYPHNLMTF	9	Unmodified	_AYPHNLMTF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2605590820312	2	547.260402	1092.50625	0.45311	0.00024797	0.25404	0.00013903	0.70715	0.000387	547.2604912228977	43.204	0.79852	43.204	42.796	43.594	0					79	44	2	0	0	0	0.39215	1	16259	16259		42.396	3.1433	1	203450			6477	1402	3260	3287	6603	6603					-0.03630172462931114
AYPLGDIPE	9	Unmodified	_AYPLGDIPE_					0	0	0		ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7453918457031	2	487.745108	973.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.905	1	48.905	48.405	49.405	0								0	0	0	0.35899	1	19402	19402		23.042	2.5607	1				6478	5189	3261	3288	6604	6604					-0.012136275763282356
AYQDRLAYL	9	Unmodified	_AYQDRLAYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;ENST00000558003.1_1_15:91016937-91017036:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.7908935546875	2	556.790381	1111.56621	0.56206	0.00031295	-0.25737	-0.0001433	0.30469	0.00016965	556.790570744493	40.256	0.15405	40.256	40.153	40.307	0					12	7	2	0	0	0	0.21419	1	15326	15326		44.377	6.5657	1	77746			6479	4398	3262	3289	6605	6605					0.014888414719507637
AYQDRLAYL	9	Unmodified	_AYQDRLAYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;ENST00000558003.1_1_15:91016937-91017036:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.7906494140625	2	556.790381	1111.56621	-0.14662	-8.1639E-05	1.1088	0.00061736	0.96215	0.00053572	556.7907418266893	40.218	0.14321	40.218	40.13	40.273	0					8	5	2	0	0	0	0.24169	1	15827	15827		49.536	13.089	1	90147			6480	4398	3262	3289	6606	6606					0.014888414719507637
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2955932617188	2	548.295299	1094.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.013	1	34.013	33.513	34.513	0								0	0	0	0.14033	1	13070	13070		62.107	10.772	1				6481	4496	3263	3290	6607	6607					0.032540294773070855
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.294921875	2	548.295299	1094.57605	-1.5076	-0.00082663	0.72515	0.0003976	-0.78249	-0.00042903	548.2955166831831	33.804	0.25855	33.804	33.702	33.961	0					15	7	3	0	0	0	0.21263	1	11895	11895		60.118	1.8883	1	217830			6482	4496	3263	3290	6608	6608					0.032540294773070855
AYQKQPTIFQ	10	Unmodified	_AYQKQPTIFQ_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	612.3247680664062	2	612.324588	1222.63462	0.16248	9.9492E-05	0.49997	0.00030615	0.66246	0.00040564	612.3247393648403	31.699	0.2951	31.699	31.552	31.847	0					26	13	3	0	0	0	0.56063	1	10177	10177		38.754	13.18	1	131830			6483	4496	3264	3291	6609	6609					0.032210860517807305
AYQKQPTIFQ	10	Unmodified	_AYQKQPTIFQ_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.3248291015625	2	612.324588	1222.63462	-0.8353	-0.00051148	1.2542	0.00076796	0.41886	0.00025648	612.3253431205187	31.968	0.49856	31.968	31.764	32.262	0					27	12	3	0	0	0	0.026898	1	11665	11665		120.31	47.427	1	594970			6484	4496	3264	3291	6610	6610					0.032210860517807305
AYQKQPTIFQ	10	Unmodified	_AYQKQPTIFQ_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	612.3257446289062	2	612.324588	1222.63462	0.51817	0.00031729	0.37091	0.00022711	0.88907	0.0005444	612.3250310173189	31.759	0.13986	31.759	31.622	31.762	0					6	5	2	0	0	0	0.36647	1	10542	10542		59.931	13.474	1	45466			6485	4496	3264	3291	6611	6611					0.032210860517807305
AYQKQPTIFQ	10	Unmodified	_AYQKQPTIFQ_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.324951171875	2	612.324588	1222.63462	0.42289	0.00025894	-0.010252	-6.2777E-06	0.41263	0.00025267	612.3245794306575	31.937	0.39829	31.937	31.827	32.225	0					12	8	2	0	0	0	0.065778	1	12077	12077		104.01	42.322	1	241700			6486	4496	3264	3291	6612	6612					0.032210860517807305
AYQKVVAGV	9	Unmodified	_AYQKVVAGV_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7709655761719	2	467.77146	933.528367	0.040244	1.8825E-05	-0.91539	-0.00042819	-0.87515	-0.00040937	467.7711654120223	27.213	0.15437	27.213	27.18	27.334	0					9	6	2	0	0	0	0.028654	1	8370	8370		110.34	30.398	1	77225			6487	7970	3265	3292	6613	6613					0.05894375277136987
AYQKVVAGV	9	Unmodified	_AYQKVVAGV_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7713317871094	2	467.77146	933.528367	0.34032	0.00015919	-0.55366	-0.00025899	-0.21334	-9.9794E-05	467.7712590078054	27.464	0.17486	27.464	27.419	27.594	0					8	4	2	0	0	0	0.021468	1	9607	9607		119.56	47.679	1	594150			6488	7970	3265	3292	6614	6614					0.05894375277136987
AYQKVVAGV	9	Unmodified	_AYQKVVAGV_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7719421386719	2	467.77146	933.528367	-1.0503	-0.00049129	1.1096	0.00051906	0.059371	2.7772E-05	467.7718093113427	27.242	0.13855	27.242	27.165	27.303	0					11	5	3	0	0	0	0.087582	1	8658	8658		82.305	27.529	1	103360			6489	7970	3265	3292	6615	6615					0.05894375277136987
AYQKVVAGV	9	Unmodified	_AYQKVVAGV_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.77142333984375	2	467.77146	933.528367	-0.72714	-0.00034014	0.23698	0.00011085	-0.49016	-0.00022928	467.77186787390144	27.301	0.1371	27.301	27.208	27.345	0					5	3	2	0	0	0	0.032656	1	8920	8920		106.42	34.538	1	174310			6490	7970	3265	3292	6616	6616					0.05894375277136987
AYQKVVAGV	9	Unmodified	_AYQKVVAGV_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7708435058594	2	467.77146	933.528367	-0.51013	-0.00023862	-0.54738	-0.00025605	-1.0575	-0.00049467	467.7711651566071	27.416	0.16943	27.416	27.357	27.526	0					7	3	3	0	0	0	0.032656	1	9824	9824		106.42	35.12	1	196990			6491	7970	3265	3292	6617	6617					0.05894375277136987
AYQSVQETW	9	Unmodified	_AYQSVQETW_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.2559814453125	2	556.256371	1110.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.592	1	39.592	39.092	40.092	0								0	0	0	0.14033	1	12846	12846		62.107	16.135	1				6492	7696	3266	3293	6618	6618					-0.05264028178703484
AYQSVQETW	9	Unmodified	_AYQSVQETW_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.2568359375	2	556.256371	1110.49819	0.57184	0.00031809	0.38166	0.0002123	0.9535	0.00053039	556.2564611528983	39.916	0.28903	39.916	39.815	40.104	0					20	10	2	0	0	0	0.012936	1	15194	15194		134.77	38.575	1	403940			6493	7696	3266	3293	6619	6619					-0.05264028178703484
AYQSVQETW	9	Unmodified	_AYQSVQETW_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.2559204101562	2	556.256371	1110.49819	0.11548	6.4236E-05	0.79941	0.00044468	0.91489	0.00050891	556.2567236432102	39.697	0.092205	39.697	39.643	39.736	0					9	5	2	0	0	0	0.028876	1	13335	13335		110.12	38.242	1	40168			6494	7696	3266	3293	6620	6620					-0.05264028178703484
AYQSVQETW	9	Unmodified	_AYQSVQETW_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2571411132812	2	556.256371	1110.49819	1.6887	0.00093933	-1.0335	-0.0005749	0.65514	0.00036443	556.2557490608585	39.904	0.29354	39.904	39.732	40.026	0					21	10	3	0	0	0	0.021961	1	15698	15698		118.74	25.548	1	245210			6495	7696	3266	3293	6621	6621					-0.05264028178703484
AYQSVQETW	9	Unmodified	_AYQSVQETW_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2561645507812	2	556.256371	1110.49819	-0.1255	-6.9812E-05	0.68082	0.00037871	0.55531	0.0003089	556.2567769677516	39.889	0.2121	39.889	39.78	39.992	0					15	7	3	0	0	0	0.047855	1	15694	15694		96.034	33.926	1	144940			6496	7696	3266	3293	6622	6622					-0.05264028178703484
AYRLLQHW	8	Unmodified	_AYRLLQHW_					0	0	0		ENST00000376281.8_1_9:86593159-86595479:-|nuORF	ENST00000376281.8_1_9:86593159-86595479:-|nuORF	ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.3258056640625	2	543.795801	1085.57705	1.9972	0.0010861	-2.1255	-0.0011558	-0.12831	-6.9775E-05	543.7944530519703	37.089	1.1383	37.089	36.741	37.88	0					51	35	2	0	0	0	0.75243	1	14397	14397		26.796	1.222	1	172910			6497	9039	3267	3294	6623	6623					0.03768288636888428
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF;DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant;DPYD|p.F707Lfs*4|2|0.3|ENSG00000188641|chr1:97306235-97306235|A/-|frameshift_variant	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.28143310546875	2	492.28166	982.548768	0.79376	0.00039075	-0.087768	-4.3207E-05	0.70599	0.00034755	492.28164867184665	44.375	0.13896	44.375	44.289	44.428	0					12	8	2	0	0	0	0.12239	1	16635	16635		74.255	24.813	1	96410			6498	7261	3268	3295	6624	6624					0.05679545936948216
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF;DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant;DPYD|p.F707Lfs*4|2|0.3|ENSG00000188641|chr1:97306235-97306235|A/-|frameshift_variant	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.28192138671875	2	492.28166	982.548768	0.58738	0.00028916	-0.98375	-0.00048428	-0.39638	-0.00019513	492.28118156491877	44.363	0.3082	44.363	44.248	44.556	0					36	16	3	0	0	0	0.055856	1	17267	17267		93.195	41.86	1	234010			6499	7261	3268	3295	6625	6625					0.05679545936948216
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.8698425292969	3	385.869703	1154.58728	0.56144	0.00021664	-0.38458	-0.0001484	0.17686	6.8244E-05	385.8696323024091	35.628	0.41369	35.628	35.518	35.931	0					11	8	2	0	0	0	0.26904	1	13785	13785		53.351	25.469	1	230080			6500	1705	3269	3296	6626	6626					0.01616851571452571
AYSLEIETR	9	Unmodified	_AYSLEIETR_					0	0	0			REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.27685546875	2	541.279846	1080.54514	-1.4839	-0.00080321	-2.5162	-0.001362	-4.0001	-0.0021652	541.2780500222486	32.419	0.19609	32.419	32.343	32.539	0					11	6	3	0	0	0	0.28897	1	11293	11293		35.618	0	1	78083	+		6501	21163	3270	3297	6627	6627					0.008088313724329055
AYSLYLVNPM	10	Unmodified	_AYSLYLVNPM_					0	0	0			REV__ENST00000263708.6_1_2:120737192-120737405:+|nuORF	REV__ENST00000263708.6_1_2:120737192-120737405:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.7948608398438	2	585.796817	1169.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.598	1	25.598	25.098	26.098	0								0	0	0	0.41137	1	8162	8162		21.96	0	1		+		6502	18049	3271	3298	6628	6628					0.0010753653982646938
AYSSPRLAAV	10	Unmodified	_AYSSPRLAAV_					0	0	0			REV__ENSG00000234438|ENST00000432196|KBTBD13	REV__ENSG00000234438|ENST00000432196|KBTBD13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.78564453125	2	517.785099	1033.55564	0.066043	3.4196E-05	-0.73956	-0.00038294	-0.67352	-0.00034874	517.7842207229064	29.213	0.27571	29.213	29.107	29.383	0					15	11	2	0	0	0	0.57211	1	9476	9476		25.574	2.0514	1	121020	+		6503	17656	3272	3299	6629	6629					0.040208588175119075
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.75732421875	2	530.756538	1059.49852	0.41025	0.00021774	0.36616	0.00019434	0.77641	0.00041208	530.7567239939082	27.398	0.18127	27.398	27.318	27.499	0					12	6	3	0	0	0	0.33044	1	8428	8428		47.657	8.8512	1	316210			6504	3044	3273	3300	6630	6630					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7567138671875	2	530.756538	1059.49852	0.11772	6.248E-05	0.45117	0.00023946	0.56889	0.00030194	530.7567110204158	27.619	0.30366	27.619	27.529	27.833	0					14	7	3	0	0	0	0.098791	1	9674	9674		79.713	32.055	1	1552000			6505	3044	3273	3300	6631	6631					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7568359375	2	530.756538	1059.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.662	1	27.662	27.162	28.162	0								0	0	0	0.099216	1	10047	10047		71.877	15.444	1				6506	3044	3273	3300	6632	6632					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.758056640625	2	530.756538	1059.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.463	1	27.463	26.963	27.963	0								0	0	0	0.10826	1	8987	8987		69.628	20.186	1				6507	3044	3273	3300	6633	6633					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7568359375	2	530.756538	1059.49852	3.4314	0.0018212	-2.6053	-0.0013828	0.82609	0.00043845	530.7550775932518	27.585	0.27046	27.585	27.476	27.746	0					13	5	3	0	0	0	0.07136	1	9899	9899		87.696	30.975	1	2012800			6508	3044	3273	3300	6634	6634					-0.028846084588622034
AYTILLWI	8	Unmodified	_AYTILLWI_					0	0	0			REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|59|1|anti-sense	REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|59|1|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.79254150390625	2	496.794404	991.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.471	1	36.471	35.971	36.971	0								0	0	0	1.7419	1	13059	13059		57.453	10.686	1		+		6509	21640	3274	3301	6635	6635					0.07813020459366271
AYTLLLHTW	9	Unmodified	_AYTLLLHTW_					0	0	0		DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;DOCK2|p.M1388Gfs*7|1|0.05|ENSG00000134516|chr5:170050344-170050345|-/AGGATGCTCATTAGAGATTT|frameshift_variant;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3073120117188	2	559.305667	1116.59678	3.4688	0.0019401	-0.60725	-0.00033964	2.8616	0.0016005	559.3054475099188	51.34	0.15509	51.34	51.256	51.411	0					14	9	2	0	0	0	0.071197	1	20101	20101		87.754	44.89	1	166970			6510	836	3275	3302	6636	6636					0.04314619856972968
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7716369628906	2	509.77146	1017.52837	-0.013887	-7.0791E-06	0.081353	4.1471E-05	0.067466	3.4392E-05	509.7714486117712	42.915	0.33982	42.915	42.773	43.113	0					39	17	3	0	0	0	0.17854	1	16219	16219		57.811	5.5121	1	230570			6511	4270	3276	3303	6637	6637					0.0203037527712695
AYTPFHAVLK	10	Unmodified	_AYTPFHAVLK_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.8195190429688	2	573.818941	1145.62333	0.95183	0.00054618	-0.82721	-0.00047467	0.12462	7.1512E-05	573.8183656138649	31.553	0.19926	31.553	31.485	31.685	0					5	4	2	0	0	0	0.66699	1	11913	11913		14.865	0	1	47293			6512	4270	3277	3304	6638	6638					0.05634308748312833
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.8145751953125	2	553.813856	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.675	1	27.675	27.175	28.175	0								0	0	0	0.3063	1	8560	8560		33.922	1.1092	1				6513	2830	3278	3305	6639	6639					0.06457701023077789
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.86572265625	3	360.86607	1079.57638	0.48153	0.00017377	-0.47567	-0.00017165	0.0058613	2.1152E-06	360.8658401975041	33.256	0.24223	33.256	33.173	33.415	0					11	6	2	0	0	0	0.47038	1	12273	12273		35.618	13.039	1	489570			6514	2117	3279	3306	6640	6640					0.03977449197191163
AYVGAGGLLF	10	Unmodified	_AYVGAGGLLF_					0	0	0			REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3	REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.26715087890625	2	484.26601	966.517468	0.86207	0.00041747	0.79991	0.00038737	1.662	0.00080484	484.26664273186725	38.209	0.6228	38.209	38.072	38.695	0					32	13	3	0	0	0	0.50739	1	15038	15038		44.531	2.0566	1	683500	+		6515	15327	3280	3307	6641	6641					0.032869729028675465
AYVGAGGLLF	10	Unmodified	_AYVGAGGLLF_					0	0	0			REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3	REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.26751708984375	2	484.26601	966.517468	2.4521	0.0011875	0.55803	0.00027023	3.0101	0.0014577	484.2663280748921	38.24	0.67848	38.24	38.099	38.778	0					22	14	3	0	0	0	0.50739	1	15031	15031		44.531	5.7249	1	504330	+		6516	15327	3280	3307	6642	6642					0.032869729028675465
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(66)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.7665405273438	2	560.765852	1119.51715	1.4346	0.00080448	-0.76329	-0.00042803	0.67132	0.00037645	560.7655071479596	26.822	0.35589	26.822	26.75	27.106	0					26	12	3	0	0	0	0.16524	1	8183	8183		65.803	28.644	1	504410			6517	4342	3281	3308	6643	6643		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(41)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	374.1795959472656	3	374.17966	1119.51715	0.04519	1.6909E-05	-0.41723	-0.00015612	-0.37204	-0.00013921	374.1795985255544	26.662	0.39451	26.662	26.548	26.943	0					31	13	5	0	0	0	0.41113	1	8116	8116		40.778	14.085	1	3269400			6518	4342	3281	3308	6644	6644		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(130)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.766357421875	2	560.765852	1119.51715	1.2789	0.00071714	-0.91078	-0.00051073	0.36808	0.00020641	560.7654478008059	26.655	0.68416	26.655	26.548	27.233	0					57	23	4	0	0	0	0.015863	2	8117	8117;8304		128.82	75.464	1	1501400			6519	4342	3281	3308	6645;6646	6645		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(51)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	374.17950439453125	3	374.17966	1119.51715	0.045435	1.7001E-05	-0.32692	-0.00012233	-0.28148	-0.00010533	374.17957221469305	26.847	0.75737	26.847	26.742	27.499	0					53	27	3	0	0	0	0.2873	1	8267	8267		51.335	23.453	1	2251700			6520	4342	3281	3308	6647	6647		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(49)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.17962646484375	3	374.17966	1119.51715	0.32596	0.00012197	-0.75014	-0.00028069	-0.42418	-0.00015872	374.17949953777577	26.884	4.3785	26.884	26.745	31.124	0					256	107	6	0	0	0	0.30951	4	9312	9312;9480;9657;9990		49.442	21.559	1	26939000			6521	4342	3281	3308	6648;6649;6650;6651	6648		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(120)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.7660522460938	2	560.765852	1119.51715	0.48791	0.00027361	-0.30323	-0.00017004	0.18468	0.00010356	560.7657522965305	26.884	2.2612	26.884	26.745	29.007	0					138	55	6	0	0	0	0.018785	2	9313	9313;9546		123.99	65.207	1	10682000			6522	4342	3281	3308	6652;6653	6652		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(46)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.17974853515625	3	374.17966	1119.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.428	1	49.428	48.928	49.928	0								0	0	0	0.23459	1	17835	17835		45.952	11.779	1				6523	4342	3281	3308	6654	6654		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(97)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.7659301757812	2	560.765852	1119.51715	0.12656	7.0969E-05	0.23374	0.00013107	0.36029	0.00020204	560.7660721007887	26.841	1.1941	26.841	26.546	27.74	0					97	42	4	0	0	0	0.043797	2	8391	8391;8542		97.473	48.031	1	1686200			6524	4342	3281	3308	6655;6656	6655		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(51)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	374.17950439453125	3	374.17966	1119.51715	-0.71106	-0.00026606	0.073459	2.7487E-05	-0.6376	-0.00023858	374.1797909244742	26.838	1.3415	26.838	26.536	27.877	0					129	47	5	0	0	0	0.2873	1	8412	8412		51.335	12.083	1	4766500			6525	4342	3281	3308	6657	6657		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(77)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.765869140625	2	560.765852	1119.51715	-0.43152	-0.00024198	0.51039	0.00028621	0.078871	4.4228E-05	560.7660162068203	26.656	0.14005	26.656	26.594	26.734	0					8	5	2	0	0	0	0.11118	1	8413	8413		76.847	41.646	1	86491			6526	4342	3281	3308	6658	6658		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(66)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.1796569824219	3	374.17966	1119.51715	0.46637	0.00017451	-0.96538	-0.00036123	-0.49902	-0.00018672	374.17947963489485	27.047	5.5294	27.047	26.744	32.274	0					290	117	6	0	0	0	0.16002	2	9858	9670;9858		66.429	32.257	1	29972000			6527	4342	3281	3308	6659;6660	6660		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(100)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7660522460938	2	560.765852	1119.51715	-0.026211	-1.4698E-05	0.32266	0.00018093	0.29644	0.00016624	560.7660364883874	26.903	0.91133	26.903	26.493	27.405	0					40	18	4	0	0	0	0.037966	1	9695	9695		101.21	47.86	1	664300			6528	4342	3281	3308	6661	6661		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(140)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7659912109375	2	560.765852	1119.51715	1.0183	0.00057105	-0.73495	-0.00041213	0.28339	0.00015892	560.7654815989417	26.887	0.79291	26.887	26.595	27.388	0					47	19	4	0	0	0	0.0086154	2	8643	8643;8810		143.97	99.858	1	1264800			6529	4342	3281	3308	6662;6663	6662		177			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(63)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7645874023438	2	560.765852	1119.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.569	1	43.569	43.069	44.069	0								0	0	0	0.13522	1	17437	17437		63.306	20.442	1				6530	4342	3281	3308	6664	6664		177			-0.03782770088673715
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.8484191894531	3	368.848022	1103.52224	0.072822	2.686E-05	0.16665	6.1467E-05	0.23947	8.8328E-05	368.84818434939996	33.56	1.0893	33.56	33.424	34.513	0					112	45	5	0	0	0	0.30268	2	10902	10902;11047		68.787	39.617	1	12178000			6531	4342	3281	3309	6665;6666	6665					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.7677612304688	2	552.768394	1103.52224	1.3202	0.00072975	-1.0552	-0.00058326	0.26502	0.0001465	552.7679092961629	33.563	0.76628	33.563	33.454	34.22	0					73	30	4	0	0	0	0.018785	2	10905	10905;11048		123.99	81.125	1	3339500			6532	4342	3281	3309	6667;6668	6667					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8481750488281	3	368.848022	1103.52224	0.4695	0.00017317	0.42042	0.00015507	0.88992	0.00032824	368.8482602185689	33.803	2.7147	33.803	33.609	36.323	0					247	71	6	0	0	0	0.23186	3	12658	12491;12658;12820		84.916	40.697	1	67176000			6533	4342	3281	3309	6669;6670;6671	6670					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7686767578125	2	552.768394	1103.52224	0.61914	0.00034224	-0.22307	-0.00012331	0.39607	0.00021893	552.7683689373251	33.804	2.676	33.804	33.609	36.285	0					177	70	4	0	0	0	2.2789E-08	6	12509	12509;12679;12929;13094;13284;13526		217.6	142.56	1	23716000			6534	4342	3281	3309	6672;6673;6674;6675;6676;6677	6672					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7698364257812	2	552.768394	1103.52224	0.62001	0.00034272	0.63389	0.0003504	1.2539	0.00069312	552.7688716121456	37.321	0.95261	37.321	36.93	37.882	0					35	28	2	0	0	0	0.50461	1	14207	14207		31.955	0.42505	1	86009			6535	4342	3281	3309	6678	6678					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.84796142578125	3	368.848022	1103.52224	0.47013	0.00017341	-0.14485	-5.3427E-05	0.32529	0.00011998	368.84788266359607	38.887	1.6458	38.887	38.643	40.288	0					85	63	2	0	0	0	0.55282	1	14929	14929		34.173	8.5985	1	110830			6536	4342	3281	3309	6679	6679					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7692260742188	2	552.768394	1103.52224	0.21938	0.00012127	0.29727	0.00016432	0.51665	0.00028559	552.7686313640324	33.633	0.78073	33.633	33.51	34.291	0					81	31	4	0	0	0	0.0012464	2	11291	11291;11429		180.49	84.679	1	2361800			6537	4342	3281	3309	6680;6681	6680					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.8480224609375	3	368.848022	1103.52224	-0.70285	-0.00025924	0.89853	0.00033142	0.19569	7.2179E-05	368.84846781683257	33.625	1.3013	33.625	33.526	34.827	0					134	54	4	0	0	0	0.21116	2	11273	11273;11414		87.754	50.246	1	13448000			6538	4342	3281	3309	6682;6683	6682					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7686157226562	2	552.768394	1103.52224	-0.38868	-0.00021485	1.1611	0.00064181	0.7724	0.00042696	552.7691276871053	33.625	0.41387	33.625	33.526	33.94	0					29	15	3	0	0	0	0.028654	1	11285	11285		110.34	59.145	1	725210			6539	4342	3281	3309	6684	6684					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.76904296875	2	552.768394	1103.52224	1.598	0.00088331	-1.1519	-0.00063675	0.44604	0.00024656	552.7678872866924	33.805	2.2228	33.805	33.605	35.828	0					160	59	5	0	0	0	0.0012464	2	12958	12958;13144		180.49	115.03	1	24032000			6540	4342	3281	3309	6685;6686	6685					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7695922851562	2	552.768394	1103.52224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.735	1	37.735	37.235	38.235	0								0	0	0	0.10093	1	14775	14775		71.378	21.353	1				6541	4342	3281	3309	6687	6687					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8480529785156	3	368.848022	1103.52224	0.47611	0.00017561	-0.43071	-0.00015887	0.045405	1.6747E-05	368.8480843225835	33.793	2.8678	33.793	33.634	36.502	0					280	78	6	0	0	0	0.058689	5	13114	12927;13114;13286;13442;13598		120.62	89.091	1	91301000			6542	4342	3281	3309	6688;6689;6690;6691;6692	6689					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.768310546875	2	552.768394	1103.52224	0.057969	3.2043E-05	0.28342	0.00015667	0.34139	0.00018871	552.7686102036536	33.793	1.3971	33.793	33.667	35.064	0					87	36	4	0	0	0	0.0072873	4	12930	12930;13118;13287;13472		148.21	82.741	1	6167900			6543	4342	3281	3309	6693;6694;6695;6696	6693					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.768798828125	2	552.768394	1103.52224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.865	1	44.865	44.365	45.365	0								0	0	0	0.22106	1	17971	17971		47.916	3.5384	1				6544	4342	3281	3309	6697	6697					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7687377929688	2	552.768394	1103.52224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.497	1	49.497	48.997	49.997	0								0	0	0	0.082189	1	19574	19574		76.847	34.372	1				6545	4342	3281	3309	6698	6698					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.769287109375	2	552.768394	1103.52224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.059	1	50.059	49.559	50.559	0								0	0	0	0.22106	1	19779	19779		47.916	12.297	1				6546	4342	3281	3309	6699	6699					-0.025384662260421464
AYVHTTPGL	9	Unmodified	_AYVHTTPGL_					0	0	0		nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.75238037109375	2	479.753267	957.491981	-2.9259	-0.0014037	2.822	0.0013538	-0.10395	-4.9872E-05	479.754402339663	36.155	0.19086	36.155	36.06	36.251	0					10	6	2	0	0	0	0.32741	1	12924	12924		47.916	3.7988	1	59794			6547	1240	3282	3310	6700	6700					0.01153498380426754
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ATP1B1|p.L184Hfs*6|1|0.09|ENSG00000143153|chr1:169127391-169127392|-/A|frameshift_variant;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.8231811523438	2	547.821484	1093.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.57	1	51.57	51.07	52.07	0								0	0	0	0.14881	1	18402	18402		63.306	8.53	1				6548	11558	3283	3311	6701	6701					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ATP1B1|p.L184Hfs*6|1|0.09|ENSG00000143153|chr1:169127391-169127392|-/A|frameshift_variant;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8216552734375	2	547.821484	1093.62842	1.8089	0.00099094	0.38979	0.00021354	2.1987	0.0012045	547.8216611246249	51.575	0.18641	51.575	51.507	51.693	0					21	11	3	0	0	0	0.010494	1	19141	19141		138.24	94.125	1	224960			6549	11558	3283	3311	6702	6702					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ATP1B1|p.L184Hfs*6|1|0.09|ENSG00000143153|chr1:169127391-169127392|-/A|frameshift_variant;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.8223876953125	2	547.821484	1093.62842	1.8777	0.0010286	0.69421	0.0003803	2.5719	0.0014089	547.8217098343955	51.535	0.1614	51.535	51.478	51.639	0					16	9	3	0	0	0	0.010494	1	20147	20147		138.24	74.035	1	218850			6550	11558	3283	3311	6703	6703					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ATP1B1|p.L184Hfs*6|1|0.09|ENSG00000143153|chr1:169127391-169127392|-/A|frameshift_variant;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.8238525390625	2	547.821484	1093.62842	3.8335	0.0021001	-2.1019	-0.0011515	1.7316	0.00094859	547.820323834248	51.509	0.19485	51.509	51.456	51.651	0					29	11	3	0	0	0	0.0086566	1	20138	20138		143.02	66.245	1	605150			6551	11558	3283	3311	6704	6704					0.08534612610924341
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7584228515625	2	487.758352	973.502152	0.80113	0.00039076	-0.14404	-7.0257E-05	0.65709	0.0003205	487.75783629574863	42.105	0.28761	42.105	41.942	42.229	0					15	7	3	0	0	0	0.31222	1	16762	16762		49.211	12.052	1	82391			6552	2501	3284	3312	6705	6705					0.01434106105648425
AYVTKKHYT	9	Unmodified	_AYVTKKHYT_					0	0	0			REV__GEMIN5|p.T475A|1|0.11|ENSG00000082516|chr5:154921382-154921382|T/C|missense_variant	REV__GEMIN5|p.T475A|1|0.11|ENSG00000082516|chr5:154921382-154921382|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.8694152832031	3	370.869591	1109.58694	-0.27	-0.00010013	2.7204	0.0010089	2.4504	0.00090878	370.8695572868804	30.773	0.65026	30.773	30.393	31.043	0					30	13	4	0	0	0	0.53083	1	11355	11355		22.58	0	1	447110	+		6553	20689	3285	3313	6706	6706					0.03653431851603273
AYVVPYVSECD	11	Unmodified	_AYVVPYVSECD_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	622.779052734375	2	622.778822	1243.54309	-0.042302	-2.6345E-05	0.11455	7.1337E-05	0.072244	4.4992E-05	622.7789939081124	15.17	0.11617	15.17	15.113	15.229	0					4	2	2	0	0	0	0.50161	1	3955	3955		44.117	4.864	1	202730	+		6554	13132	3286	3314	6707	6707					-0.06893965427684634
AYVYPPPVA	9	Unmodified	_AYVYPPPVA_					0	0	0		ENST00000587642.5_1_17:73843478-73843967:-|nuORF;WBP2|p.M185*|1|0.26|ENSG00000132471|chr17:75847590-75847590|G/-|frameshift_variant;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000587642.5_1_17:73843478-73843967:-|nuORF	ENST00000587642.5_1_17:73843478-73843967:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7602233886719	2	488.760561	975.506569	-0.71241	-0.0003482	-0.58084	-0.00028389	-1.2932	-0.00063209	488.7603565861257	28.344	0.49327	28.344	28.071	28.565	0					30	10	4	0	0	0	0.52436	1	10300	10300		29.842	6.7991	1	946020			6555	3792	3287	3315	6708	6708					0.01783570528561995
AYVYTPEVY	9	Unmodified	_AYVYTPEVY_					0	0	0		ENSG00000166111|ENST00000610966|SVOP	ENSG00000166111|ENST00000610966|SVOP	ENSG00000166111|ENST00000610966|SVOP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.84820556640625	3	368.846452	1103.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.54	1	38.54	38.04	39.04	0								0	0	0	0.33492	1	15123	15123		44.117	16.235	1				6556	5858	3288	3316	6709	6709					-0.03009071887800019
AYYSWGLLL	9	Unmodified	_AYYSWGLLL_					0	0	0			REV__ZDHHC2|p.S285Qfs*3|1|0.14|ENSG00000104219|chr8:17210049-17210049|T/-|frameshift_variant	REV__ZDHHC2|p.S285Qfs*3|1|0.14|ENSG00000104219|chr8:17210049-17210049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2852783203125	2	543.286943	1084.55933	2.0078	0.0010908	-3.5344	-0.0019202	-1.5266	-0.0008294	543.2838451387964	40.495	0.19019	40.495	40.439	40.629	0					10	4	3	0	0	0	0.24095	1	16097	16097		40.573	0	1	170290	+		6557	13715	3289	3317	6710	6710					0.020435285913890766
CAAKWMQIL	9	Unmodified	_CAAKWMQIL_					0	0	0			REV__ENSG00000117501|ENST00000367759|MROH9	REV__ENSG00000117501|ENST00000367759|MROH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2758178710938	2	532.274998	1062.53544	0.12536	6.6724E-05	2.8287	0.0015056	2.954	0.0015724	532.2763621836453	40.402	0.18862	40.402	40.348	40.537	0					16	7	3	0	0	0	0.16524	1	15396	15396		65.803	1.5959	1	125770	+		6558	14197	3290	3318	6711	6711					0.006676485616935679
CAAPHSRCC	9	Unmodified	_CAAPHSRCC_					0	0	0			REV__PRAF2|p.R95C|1|0.83|ENSG00000243279|chrX:49072547-49072547|G/A|missense_variant	REV__PRAF2|p.R95C|1|0.83|ENSG00000243279|chrX:49072547-49072547|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.1858825683594	2	474.185857	946.357161	-0.57513	-0.00027272	0.81643	0.00038714	0.24131	0.00011442	474.1861603797464	14.398	0.19279	14.398	14.301	14.494	0					8	4	3	0	0	0	0.59802	1	3739	3739		21.96	3.6355	1	209310	+		6559	21410	3291	3319	6712	6712					-0.11816344628994102
CAASYALKLL	10	Unmodified	_CAASYALKLL_					0	0	0			REV__ENSG00000107779|ENST00000372037|BMPR1A	REV__ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7938842773438	2	526.794078	1051.5736	0.26384	0.00013899	-1.0481	-0.00055213	-0.78425	-0.00041314	526.7935838186258	13.276	0.46204	13.276	13.129	13.591	0					23	10	4	0	0	0	0.55603	1	3202	3202		39.253	2.0937	1	3393800	+		6560	13861	3292	3320	6713	6713					0.049878577480058084
CAAVQNCKK	9	Unmodified	_CAAVQNCKK_					0	0	0			REV__GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant	REV__GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7371826171875	2	482.73878	963.463006	-0.57558	-0.00027786	-2.574	-0.0012426	-3.1496	-0.0015204	482.7375416385035	15.558	0.21792	15.558	15.451	15.669	0					6	4	2	0	0	0	0.5879	1	4292	4292		23.042	3.6825	1	489630	+		6561	12839	3293	3321	6714	6714					-0.02018685511870899
CADNTGAKNL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))ADNTGAKNL_	C(1)ADNTGAKNL		C(58)ADNTGAKNL		0	1	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2459106445312	2	532.24548	1062.47641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.844	1	18.844	18.344	19.344	0								0	0	0	0.2486	1	4996	4996		58.246	17.468	1				6562	3428	3294	3322	6715	6715	140				-0.05233156198914912
CADNTGAKNL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))ADNTGAKNL_	C(1)ADNTGAKNL		C(75)ADNTGAKNL		0	1	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2460327148438	2	532.24548	1062.47641	1.7148	0.00091267	-0.76391	-0.00040659	0.95085	0.00050608	532.2451818584482	19.074	0.21298	19.074	18.967	19.18	0					9	4	3	0	0	0	0.23612	1	5980	5980		75.043	14.925	1	888000			6563	3428	3294	3322	6716	6716	140				-0.05233156198914912
CADNTGAKNL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))ADNTGAKNL_	C(1)ADNTGAKNL		C(73)ADNTGAKNL		0	1	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2459716796875	2	532.24548	1062.47641	-1.2659	-0.00067377	1.669	0.00088833	0.40313	0.00021456	532.2466054770441	18.924	0.14911	18.924	18.872	19.021	0					7	3	3	0	0	0	0.2538	1	5045	5045		72.879	8.672	1	169570			6564	3428	3294	3322	6717	6717	140				-0.05233156198914912
CADNTGAKNL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))ADNTGAKNL_	C(1)ADNTGAKNL		C(72)ADNTGAKNL		0	1	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2459716796875	2	532.24548	1062.47641	3.4102	0.0018151	-2.6574	-0.0014144	0.75279	0.00040067	532.2442128006803	19.071	0.21493	19.071	18.914	19.129	0					9	4	3	0	0	0	0.25899	1	5842	5842		72.243	12.125	1	975110			6565	3428	3294	3322	6718	6718	140				-0.05233156198914912
CAGWVLAGL	9	Unmodified	_CAGWVLAGL_					0	0	0			REV__ENSG00000129038|ENST00000261921|LOXL1	REV__ENSG00000129038|ENST00000261921|LOXL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2344665527344	2	445.233656	888.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.224	1	21.224	20.724	21.724	0								0	0	0	0.28056	1	6058	6058		39.021	3.8695	1		+		6566	14537	3295	3323	6719	6719					0.004070748252047451
CAHPQLLKG	9	Unmodified	_CAHPQLLKG_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3;LRIG3|p.A746Cfs*16|2|0.45|ENSG00000139263|chr12:58877700-58877701|-/A|frameshift_variant	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.8446960449219	3	322.8445	965.511671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.695	1	14.695	14.195	15.195	0								0	0	0	0.3428	1	3161	3161		26.693	6.6624	1				6567	4318	3296	3324	6720	6720					0.02753551119531039
CAHRRRRG	8	Unmodified	_CAHRRRRG_					0	0	0		ENST00000571332.5_1_17:2310517-2318631:-|nuORF	ENST00000571332.5_1_17:2310517-2318631:-|nuORF	ENST00000571332.5_1_17:2310517-2318631:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.8538513183594	3	337.854504	1010.54168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.712	1	20.712	20.212	21.212	0								0	0	0	1.7419	1	6754	6754		30.504	0	1				6568	10801	3297	3325	6721	6721					0.03683347628100364
CAKLKKGL	8	Unmodified	_CAKLKKGL_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7727355957031	2	430.772948	859.531344	-0.24841	-0.00010701	-0.65401	-0.00028173	-0.90242	-0.00038874	430.77280641207386	31.844	0.35123	31.844	31.771	32.122	0					27	14	3	0	0	0	0.76283	1	10246	10246		25.45	25.45	1	513210	+		6569	14863	3298	3326	6722	6722					0.09595927130294513
CAKLKKGL	8	Unmodified	_CAKLKKGL_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7727355957031	2	430.772948	859.531344	-0.5236	-0.00022555	-0.42399	-0.00018264	-0.94759	-0.0004082	430.77292537971834	32.135	0.57766	32.135	32.005	32.583	0					33	14	4	0	0	0	0.65276	1	11756	11756		40.573	40.573	1	2290700	+		6570	14863	3298	3326	6723	6723					0.09595927130294513
CAKLKKGL	8	Unmodified	_CAKLKKGL_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7726745605469	2	430.772948	859.531344	0.97381	0.00041949	-1.6246	-0.00069983	-0.65079	-0.00028034	430.772357188306	32.089	0.38211	32.089	31.99	32.372	0					26	8	4	0	0	0	0.49887	1	12152	12152		60.294	17.819	1	3949700	+		6571	14863	3298	3326	6724	6724					0.09595927130294513
CAKLKKGL	8	Unmodified	_CAKLKKGL_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.77288818359375	2	430.772948	859.531344	0.96542	0.00041588	-1.5389	-0.0006629	-0.57345	-0.00024703	430.77239798736525	32.059	0.31739	32.059	31.952	32.27	0					17	6	4	0	0	0	0.65276	1	12061	12061		40.573	40.573	1	922460	+		6572	14863	3298	3326	6725	6725					0.09595927130294513
CAKQAVEPDI	10	Unmodified	_CAKQAVEPDI_					0	0	0			REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2692260742188	2	537.268424	1072.5223	1.9755	0.0010614	-0.46264	-0.00024856	1.5129	0.00081282	537.2682076689513	38.975	2.6514	38.975	38.111	40.762	0					186	58	4	0	0	0	0.28036	1	15286	15286		69.628	10.846	1	2299200	+		6573	15190	3299	3327	6726	6726					-0.011065110167010062
CAKRTIQK	8	Unmodified	_CAKRTIQK_					0	0	0			REV__ENST00000524657.1_1_11:67020024-67022523:+|nuORF	REV__ENST00000524657.1_1_11:67020024-67022523:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2793884277344	2	474.276386	946.53822	2.36	0.0011193	4.3262	0.0020518	6.6863	0.0031711	474.27881268743926	11.916	2.5814	11.916	11.76	14.341	0					176	62	6	0	0	0	0.24806	1	2535	2535		104.75	5.7336	1	259270000	+		6574	16492	3300	3328	6727	6727					0.06281240010878264
CALALSALL	9	Unmodified	_CALALSALL_					0	0	0		nc|ENSG00000128567|O00592-2|PODXL;ENSG00000128567|ENST00000378555|PODXL;PODXL|p.M231*|1|0.13|ENSG00000128567|chr7:131510844-131510844|C/-|frameshift_variant	nc|ENSG00000128567|O00592-2|PODXL	nc|ENSG00000128567|O00592-2|PODXL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7563171386719	2	437.756964	873.499375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.867	1	34.867	34.367	35.367	0								0	0	0	0.30835	1	11417	11417		33.516	1.5607	1				6575	3547	3301	3329	6728	6728					0.05756514656491163
CALCLLAP	8	Unmodified	_CALCLLAP_					0	0	0			REV__ENST00000481739.1_1_9:137328530-137328701:+|nuORF	REV__ENST00000481739.1_1_9:137328530-137328701:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.2120361328125	2	402.211335	802.408117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.202	1	36.202	35.702	36.702	0								0	0	0	1.7419	1	13635	13635		24.504	4.0222	1		+		6576	19602	3302	3330	6729	6729					-0.0009907231249144388
CALIRVAK	8	Unmodified	_CALIRVAK_					0	0	0			REV__ENSG00000265972|ENST00000582401|TXNIP	REV__ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2707824707031	2	437.270573	872.526593	-0.27865	-0.00012184	-0.18738	-8.1938E-05	-0.46603	-0.00020378	437.27067981525846	27.333	0.2246	27.333	27.244	27.468	0					17	8	3	0	0	0	0.44433	1	8399	8399		65.803	0	1	180640	+		6577	17788	3303	3331	6730	6730					0.08523042987519602
CALIRVAK	8	Unmodified	_CALIRVAK_					0	0	0			REV__ENSG00000265972|ENST00000582401|TXNIP	REV__ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2703857421875	2	437.270573	872.526593	-3.0779	-0.0013459	2.1846	0.00095527	-0.89327	-0.0003906	437.2717616976201	27.388	0.17525	27.388	27.279	27.454	0					9	4	3	0	0	0	0.44433	1	8951	8951		65.803	2.4969	1	112890	+		6578	17788	3303	3331	6731	6731					0.08523042987519602
CALPAEVRSY	10	Unmodified	_CALPAEVRSY_					0	0	0			REV__SEC14L5|p.V592A|1|0.38|ENSG00000103184|chr16:5008623-5008623|T/C|missense_variant	REV__SEC14L5|p.V592A|1|0.38|ENSG00000103184|chr16:5008623-5008623|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7800903320312	2	554.776416	1107.53828	1.8206	0.00101	-1.9781	-0.0010974	-0.15754	-8.7399E-05	554.7752918362546	42.479	0.3764	42.479	42.257	42.634	0					15	10	2	0	0	0	0.51121	1	16901	16901		44.117	1.7207	1	167670	+		6579	21500	3304	3332	6732	6732					-0.011188047797986655
CAMFTGKNQK	10	Unmodified	_CAMFTGKNQK_					0	0	0		ENST00000512977.1_1_5:137043266-137071515:-|nuORF	ENST00000512977.1_1_5:137043266-137071515:-|nuORF	ENST00000512977.1_1_5:137043266-137071515:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.271484375	2	564.270444	1126.52633	-0.36646	-0.00020678	2.1271	0.0012003	1.7607	0.00099349	564.2717343597317	18.554	0.14095	18.554	18.485	18.626	0					9	4	3	0	0	0	0.72769	1	4876	4876		17.468	0.99486	1	706880			6580	10244	3305	3333	6733	6733					-0.031867447946297034
CAPGRWLLA	9	Unmodified	_CAPGRWLLA_					0	0	0		ENST00000395989.7_3_20:50715116-50721421:-|nuORF	ENST00000395989.7_3_20:50715116-50721421:-|nuORF	ENST00000395989.7_3_20:50715116-50721421:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.76654052734375	2	493.765655	985.516756	0.88063	0.00043483	1.0696	0.00052812	1.9502	0.00096295	493.76613196172775	29.887	0.26564	29.887	29.731	29.997	0					9	5	2	0	0	0	0.49003	1	11013	11013		33.516	33.516	1	561570			6581	9199	3306	3334	6734	6734					0.023418549821485612
CAPKTFWVN	9	Unmodified	_CAPKTFWVN_					0	0	0		ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;OBSL1-MRPL2|1|fusion	ENST00000465149.1_1_2:220420747-220435459:-|nuORF;OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.264404296875	2	533.262945	1064.51134	1.7314	0.00092331	0.65356	0.00034852	2.385	0.0012718	533.2632588302876	11.103	0.16545	11.103	11.039	11.204	0					8	5	2	0	0	0	0.47038	1	2189	2189		35.618	1.4457	1	57279			6582	11869;3341	3307	3335	6735	6735					-0.018338686003289695
CAPPRSNSSPM	11	Unmodified	_CAPPRSNSSPM_					0	0	0			REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant	REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.7579345703125	2	573.755158	1145.49576	0.068579	3.9347E-05	3.5159	0.0020173	3.5845	0.0020566	573.7576106639132	35.642	0.16171	35.642	35.576	35.737	0					12	8	2	0	0	0	0.64562	1	12058	12058		32.812	2.4947	1	89038	+		6583	16484	3308	3336	6736	6736					-0.07116523179684009
CAQIIPFLTQ	10	Unmodified	_CAQIIPFLTQ_					0	0	0		TLE2|p.Q379Rfs*13|1|0.33|ENSG00000065717|chr19:3009580-3009580|G/-|frameshift_variant;TLE2|p.S249Afs*43|2|0.16|ENSG00000065717|chr19:3013798-3013798|G/-|frameshift_variant;TLE2|p.L343*|1|0.5|ENSG00000065717|chr19:3009688-3009688|G/-|frameshift_variant;TLE2|p.R538Pfs*59|1|0.19|ENSG00000065717|chr19:3005856-3005857|-/G|frameshift_variant;nc|ENSG00000065717|Q04725-2|TLE2;TLE2|p.L609Pfs*20|1|0.76|ENSG00000065717|chr19:3005509-3005510|-/C|frameshift_variant;nc|ENSG00000065717|Q04725-3|TLE2;ENSG00000065717|ENST00000262953|TLE2	TLE2|p.Q379Rfs*13|1|0.33|ENSG00000065717|chr19:3009580-3009580|G/-|frameshift_variant	TLE2|p.Q379Rfs*13|1|0.33|ENSG00000065717|chr19:3009580-3009580|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.53887939453125	3	378.538965	1132.59507	0.21345	8.0797E-05	-0.39256	-0.0001486	-0.17911	-6.78E-05	378.53885208123603	27.343	1.4353	27.343	26.314	27.749	0					48	34	3	0	0	0	0.6796	1	9544	9544		17.833	0	1	401020			6584	22535	3309	3337	6737	6737					0.03407242776711428
CARPRCPQAAL	11	Unmodified	_CARPRCPQAAL_					0	0	0			REV__ENST00000518479.5_2_8:28196600-28196786:+|nuORF	REV__ENST00000518479.5_2_8:28196600-28196786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.30419921875	2	593.30261	1184.59067	-0.54211	-0.00032164	2.5951	0.0015397	2.053	0.001218	593.3039563875932	30.621	0.16155	30.621	30.534	30.695	0					9	6	2	0	0	0	0.45317	1	10086	10086		47.657	4.7931	1	50662	+		6585	19928	3310	3338	6738	6738					0.005754550821620796
CASAMESSVL	10	Unmodified	_CASAMESSVL_					0	0	0			REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.21826171875	2	499.220085	996.425618	-1.064	-0.00053115	-2.6478	-0.0013219	-3.7118	-0.001853	499.2185391356737	31.002	0.2434	31.002	30.923	31.167	0					12	9	2	0	0	0	0.37692	1	10232	10232		58.782	2.3482	1	71625	+		6586	18596	3311	3339	6739	6739					-0.07273821568151106
CAVAQGGRAP	10	Unmodified	_CAVAQGGRAP_					0	0	0			REV__ENSG00000132671|ENST00000255008|SSTR4	REV__ENSG00000132671|ENST00000255008|SSTR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2347106933594	2	465.234719	928.454884	-0.68188	-0.00031723	0.52102	0.00024239	-0.16086	-7.4839E-05	465.23503011951703	21.956	0.52839	21.956	21.766	22.295	0					27	12	4	0	0	0	0.42631	1	7066	7066		53.351	7.3995	1	683650	+		6587	14671	3312	3340	6740	6740					-0.012204964369857407
CCCSCTFCI	9	Unmodified	_CCCSCTFCI_					0	0	0			REV__ENST00000460758.1_1_3:48511100-48514492:-|nuORF	REV__ENST00000460758.1_1_3:48511100-48514492:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.65155029296875	2	491.651612	981.288672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.291	1	49.291	48.791	49.791	0								0	0	0	0.39312	1	14911	14911		12.959	4.1369	1		+		6588	15953	3313	3341	6741	6741					-0.20272093315372786
CCIQIFSL	8	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))C(Carbamidomethyl (C))IQIFSL_	C(1)C(1)IQIFSL		C(46)C(46)IQIFSL		0	2	0		ENST00000481822.1_1_1:155223346-155224854:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000481822.1_1_1:155223346-155224854:-|nuORF	ENST00000481822.1_1_1:155223346-155224854:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2506103515625	2	520.748813	1039.48307	3.38	0.0017601	4.3761	0.0022788	7.7561	0.004039	520.7543283926697	49.481	0.33624	49.481	49.305	49.641	0					32	15	3	0	0	0	0.61938	1	19543	19543		45.952	6.6991	1	184680			6589	5383	3314	3342	6742	6742	219;220				-0.03508934571914324
CCLRFLAL	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))CLRFLAL_	C(0.5)C(0.5)LRFLAL		C(0)C(0)LRFLAL		0	1	0			REV__ENST00000264431.8_1_4:160279426-160279690:+|nuORF	REV__ENST00000264431.8_1_4:160279426-160279690:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2615661621094	2	498.26189	994.509228	-2.23	-0.0011111	1.3489	0.00067209	-0.88112	-0.00043903	498.26260938994875	33.272	0.24323	33.272	33.171	33.414	0					15	7	3	0	0	0	0.6282	1	11642	11642		44.531	8.9128	2	173190	+		6590	18059	3315	3343	6743	6743	638;639				0.011753793902130383
CDALGLPNTP	10	Unmodified	_CDALGLPNTP_					0	0	0			REV__ENST00000428388.6_1_6:32135427-32135845:+|nuORF	REV__ENST00000428388.6_1_6:32135427-32135845:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.74163818359375	2	500.742042	999.469531	-0.13973	-6.9968E-05	-1.2648	-0.00063334	-1.4045	-0.00070331	500.74144428759854	32.904	0.24332	32.904	32.775	33.019	0					12	6	3	0	0	0	0.536	1	12127	12127		41.427	0.64845	1	174570	+		6591	19133	3316	3344	6744	6744					-0.03022469079496659
CDALGLPNTP	10	Unmodified	_CDALGLPNTP_					0	0	0			REV__ENST00000428388.6_1_6:32135427-32135845:+|nuORF	REV__ENST00000428388.6_1_6:32135427-32135845:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7420349121094	2	500.742042	999.469531	0.15349	7.686E-05	-1.8209	-0.00091179	-1.6674	-0.00083493	500.74186391837145	32.698	0.21579	32.698	32.605	32.821	0					9	6	2	0	0	0	0.36476	1	11387	11387		60.118	1.3363	1	195520	+		6592	19133	3316	3344	6745	6745					-0.03022469079496659
CDAYDFEKQ	9	Unmodified	_CDAYDFEKQ_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.7249145507812	2	559.726589	1117.43863	-0.087932	-4.9218E-05	-3.2974	-0.0018457	-3.3854	-0.0018949	559.7246397456802	12.263	0.13612	12.263	12.168	12.304	0					6	3	2	0	0	0	0.60749	1	2723	2723		20.947	1.8434	1	350340			6593	3929	3317	3345	6746	6746					-0.11539667184410973
CDIPEAQPL	9	Unmodified	_CDIPEAQPL_					0	0	0		ENST00000394957.7_1_10:73510788-73511004:-|nuORF	ENST00000394957.7_1_10:73510788-73511004:-|nuORF	ENST00000394957.7_1_10:73510788-73511004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2346496582031	2	493.236593	984.458632	-0.13007	-6.4155E-05	-2.6157	-0.0012901	-2.7457	-0.0013543	493.23518575744174	39.184	0.10892	39.184	39.148	39.257	0					11	6	2	0	0	0	0.5741	1	12742	12742		24.519	0.31644	1	99341			6594	9185	3318	3346	6747	6747					-0.034218714537814776
CDKPIGPCVT	10	Unmodified	_CDKPIGPCVT_					0	0	0		CON__REFSEQ:XP_986630	CON__REFSEQ:XP_986630	CON__REFSEQ:XP_986630	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7493286132812	2	516.74627	1031.47799	3.2987	0.0017046	1.8005	0.00093039	5.0992	0.002635	516.7471980726186	10.417	0.078488	10.417	10.382	10.461	0					10	4	3	0	0	0	0.43008	1	1981	1981		52.937	0	1	392760		+	6595	675	3319	3347	6748	6748					-0.03649238434536528
CDLILYCKE	9	Unmodified	_CDLILYCKE_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7	REV__ENSG00000147606|ENST00000276609|SLC26A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2633666992188	2	550.261753	1098.50895	0.33007	0.00018163	2.5941	0.0014274	2.9241	0.001609	550.2631087575367	18.939	0.072346	18.939	18.898	18.97	0					4	2	2	0	0	0	0.44593	1	5047	5047		37.812	2.1932	1	67125	+		6596	15357	3320	3348	6749	6749					-0.03636085120297139
CDPCRHPR	8	Unmodified	_CDPCRHPR_					0	0	0			REV__ENSG00000176472|ENST00000314228|ZNF575	REV__ENSG00000176472|ENST00000314228|ZNF575	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.21917724609375	2	492.218546	982.422538	0.58663	0.00028875	0.81566	0.00040148	1.4023	0.00069023	492.21891102233917	33.394	0.43388	33.394	33.22	33.654	0					28	10	4	0	0	0	0.49216	1	12787	12787		60.972	60.972	1	1271900	+		6597	16656	3321	3349	6750	6750					-0.06937607111638044
CDRLGLAPV	9	Unmodified	_CDRLGLAPV_					0	0	0			REV__ENST00000434817.5_1_1:2487240-2488091:+|nuORF	REV__ENST00000434817.5_1_1:2487240-2488091:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2546081542969	2	472.25512	942.495686	-1.4449	-0.00068238	0.86427	0.00040816	-0.58067	-0.00027423	472.2555900482512	29.649	0.42474	29.649	29.434	29.859	0					21	16	2	0	0	0	0.42902	1	9646	9646		39.253	5.0803	1	86754	+		6598	19198	3322	3350	6751	6751					0.022138448826240165
CDTIKRIK	8	Unmodified	_CDTIKRIK_					0	0	0			REV__nc|ENSG00000110719|Q13488-2|TCIRG1	REV__nc|ENSG00000110719|Q13488-2|TCIRG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.85736083984375	3	326.191788	975.553536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.895	1	17.895	17.395	18.395	0								0	0	0	1.7419	1	4359	4359		15.642	0	1		+		6599	13944	3323	3351	6752	6752					0.06478106808060602
CDVCPLPRL	9	Unmodified	_CDVCPLPRL_					0	0	0		ENST00000250894.8_2_16:1820092-1820212:+|nuORF	ENST00000250894.8_2_16:1820092-1820212:+|nuORF	ENST00000250894.8_2_16:1820092-1820212:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2604675292969	2	508.256805	1014.49906	-0.025615	-1.3019E-05	3.2043	0.0016286	3.1787	0.0016156	508.2585015706689	48.03	0.16604	48.03	47.962	48.128	0					18	10	3	0	0	0	0.22377	1	17524	17524		58.782	2.0609	1	76410			6600	8241	3324	3352	6753	6753					-0.0076122833502267895
CDWPNGEL	8	Unmodified	_CDWPNGEL_					0	0	0			REV__ENSG00000099769|ENST00000215539|IGFALS;REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000099769|ENST00000215539|IGFALS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.1924133300781	2	467.192185	932.369817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.287	1	48.287	47.787	48.787	0								0	0	0	1.7419	1	19201	19201		13.775	0	1		+		6601	13496;16778	3325	3353	6754	6754					-0.09907286693464812
CEAARSEIQV	10	Unmodified	_CEAARSEIQV_					0	0	0		ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.2692260742188	2	553.268955	1104.52336	1.4205	0.00078593	-2.4494	-0.0013552	-1.0288	-0.00056923	553.2679122523912	20.266	0.22054	20.266	20.168	20.389	0					15	7	3	0	0	0	0.64162	1	5393	5393		29.17	1.0886	1	63650			6602	1066	3326	3354	6755	6755					-0.02472296647783878
CEAKFLVSAV	10	Unmodified	_CEAKFLVSAV_					0	0	0			REV__ENST00000515804.1_1_5:72853376-72858706:-|nuORF	REV__ENST00000515804.1_1_5:72853376-72858706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.282470703125	2	533.78371	1065.55287	0.47331	0.00025265	0.26719	0.00014262	0.7405	0.00039527	533.7834104250555	33.634	0.22628	33.634	33.485	33.711	0					11	7	2	0	0	0	0.63224	1	10979	10979		30.318	3.6248	1	65824	+		6603	15986	3327	3355	6756	6756					0.022712673683372486
CEAYLKAM	8	Unmodified	_CEAYLKAM_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENST00000479002.1_1_2:27457475-27458610:+|nuORF	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7184753417969	2	464.716981	927.41941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.921	1	18.921	18.421	19.421	0								0	0	0	1.7419	1	5893	5893		27.882	2.4321	1				6604	1720	3328	3356	6757	6757					-0.047202950089968
CEEIKTHLPP	10	Unmodified	_CEEIKTHLPP_					0	0	0		KIAA0146-ANK1|4|fusion;KIAA0146-ANK1|1|fusion;KIAA0146-ANK1|2|fusion;KIAA0146-ANK1|3|fusion;KIAA0146-ANK1|5|fusion;ENSG00000164808|ENST00000297423|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;nc|ENSG00000164808|Q14159-2|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF	KIAA0146-ANK1|4|fusion	KIAA0146-ANK1|4|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.7973022460938	2	583.797349	1165.58014	0.011404	6.6575E-06	0.33848	0.00019761	0.34989	0.00020426	583.7976094505681	43.111	0.38825	43.111	42.914	43.302	0					27	21	2	0	0	0	0.67098	1	16247	16247		25.574	0	1	90821			6605	11250	3329	3357	6758	6758					0.0039775090874627494
CEEMGADD	8	Unmodified	_CEEMGADD_					0	0	0			REV__ENST00000549335.5_1_12:105433559-105443704:-|nuORF	REV__ENST00000549335.5_1_12:105433559-105443704:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.1376037597656	2	435.136218	868.257884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.928	1	51.928	51.428	52.428	0								0	0	0	1.7419	1	18488	18488		8.8223	0.59103	1		+		6606	20187	3330	3358	6759	6759					-0.18151508832761465
CEEMKATVI	9	Unmodified	_CEEMKATVI_					0	0	0		ENSG00000170442|ENST00000423955|KRT86;CON__O43790;nc|ENSG00000290966|A6NCN2|KRT87P;CON__Q61726;ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533;ENSG00000135443|ENST00000257901|KRT85;CON__P78386	ENSG00000170442|ENST00000423955|KRT86	ENSG00000170442|ENST00000423955|KRT86	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2462158203125	2	512.246103	1022.47765	1.0563	0.00054107	-1.7742	-0.00090884	-0.71795	-0.00036777	512.2455115207364	34.694	0.3545	34.694	34.573	34.927	0					26	9	4	0	0	0	0.048471	1	12937	12937		95.815	0	1	1629900		+	6607	626	3331	3359	6760	6760					-0.03268658154388504
CEFAFNMKK	9	Oxidation (M)	_CEFAFNM(Oxidation (M))KK_		CEFAFNM(1)KK		CEFAFNM(53)KK	0	0	1		SMAD3|p.L153Tfs*13|1|0.33|ENSG00000166949|chr15:67165301-67165302|-/C|frameshift_variant;SMAD3|p.P152Hfs*34|1|0.11|ENSG00000166949|chr15:67165302-67165302|C/-|frameshift_variant;nc|ENSG00000166949|P84022-3|SMAD3;SMAD3|p.V331Rfs*31|1|0.42|ENSG00000166949|chr15:67184843-67184844|-/C|frameshift_variant;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3	SMAD3|p.L153Tfs*13|1|0.33|ENSG00000166949|chr15:67165301-67165302|-/C|frameshift_variant	SMAD3|p.L153Tfs*13|1|0.33|ENSG00000166949|chr15:67165301-67165302|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.259765625	2	567.259545	1132.50454	0.27901	0.00015827	0.1437	8.1514E-05	0.42271	0.00023978	567.2597555022484	39.046	0.28106	39.046	38.938	39.219	0					17	9	3	0	0	0	0.26904	1	15333	15333		53.351	8.8204	1	179430			6608	5955	3332	3360	6761	6761		243			-0.05641549543202018
CEFMEIHKP	9	Unmodified	_CEFMEIHKP_					0	0	0			REV__ENST00000343702.8_1_12:96052724-96052781:-|nuORF	REV__ENST00000343702.8_1_12:96052724-96052781:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.2601928710938	2	567.259545	1132.50454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.889	1	38.889	38.389	39.389	0								0	0	0	0.3368	1	13094	13094		27.882	2.3082	1		+		6609	18468	3333	3361	6762	6762					-0.05641549543202018
CEGARKTKMR	10	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))EGARKTKM(Oxidation (M))R_	C(1)EGARKTKMR	CEGARKTKM(1)R	C(85)EGARKTKMR	CEGARKTKM(85)R	0	1	1			REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF	REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	626.8175048828125	2	626.816081	1251.61761	1.3709	0.00085928	0.97362	0.00061028	2.3445	0.0014696	626.8167173100134	31.71	0.25519	31.71	31.605	31.861	0					11	5	3	0	0	0	0.15878	1	11995	11995		85.161	10.118	1	697020	+		6610	20095	3334	3362	6763	6763	708	731			0.0018651890270575677
CEGARKTKMR	10	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))EGARKTKM(Oxidation (M))R_	C(1)EGARKTKMR	CEGARKTKM(1)R	C(83)EGARKTKMR	CEGARKTKM(83)R	0	1	1			REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF	REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	626.818115234375	2	626.816081	1251.61761	3.1737	0.0019893	-0.15314	-9.5993E-05	3.0206	0.0018933	626.816017273229	31.691	0.21594	31.691	31.586	31.802	0					14	4	4	0	0	0	0.17315	1	11864	11864		82.75	8.4954	1	783020	+		6611	20095	3334	3362	6764	6764	708	731			0.0018651890270575677
CELARMYPEL	10	Oxidation (M)	_CELARM(Oxidation (M))YPEL_		CELARM(1)YPEL		CELARM(43)YPEL	0	0	1		ENSG00000073910|ENST00000542859|FRY;FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.790283203125	2	620.788666	1239.56278	1.1943	0.00074143	0.17798	0.00011049	1.3723	0.00085192	620.7896037856912	38.985	0.39135	38.985	38.866	39.257	0					39	13	4	0	0	0	0.52275	1	15283	15283		42.864	12.547	1	244400			6612	1518	3335	3363	6765	6765		70			-0.047419126885870355
CEMITNRIL	9	Unmodified	_CEMITNRIL_					0	0	0			REV__ENST00000541990.5_1_1:155170782-155174851:-|nuORF	REV__ENST00000541990.5_1_1:155170782-155174851:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.780029296875	2	546.780644	1091.54674	0.46298	0.00025315	0.3514	0.00019214	0.81437	0.00044528	547.282398567408	40.366	0.17311	40.366	40.26	40.433	0					14	10	2	0	0	0	0.36135	1	13514	13514		37.812	8.662	1	105680	+		6613	16305	3336	3364	6766	6766					0.004624258651801938
CEQAGRVGL	9	Unmodified	_CEQAGRVGL_					0	0	0			REV__ENST00000328070.10_1_19:57134131-57134404:+|nuORF	REV__ENST00000328070.10_1_19:57134131-57134404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.73736572265625	2	466.734551	931.45455	4.0305	0.0018812	2.18	0.0010175	6.2104	0.0028986	466.7355021273785	30.568	0.095566	30.568	30.539	30.635	0					6	3	2	0	0	0	0.42902	1	10064	10064		39.253	7.298	1	39198	+		6614	18366	3337	3365	6767	6767					-0.013919161568537675
CEQNNRWYL	9	Unmodified	_CEQNNRWYL_					0	0	0		nc|ENSG00000137747|Q9BYE2-3|TMPRSS13;nc|ENSG00000137747|Q9BYE2-2|TMPRSS13;ENSG00000137747|ENST00000524993|TMPRSS13;nc|ENSG00000137747|Q9BYE2|TMPRSS13	nc|ENSG00000137747|Q9BYE2-3|TMPRSS13	nc|ENSG00000137747|Q9BYE2-3|TMPRSS13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.2760009765625	2	613.274572	1224.53459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.91	1	41.91	41.41	42.41	0								0	0	0	0.27025	1	16471	16471		40.778	4.4605	1				6615	4189	3338	3366	6768	6768					-0.06869474553650434
CERHARLK	8	Unmodified	_CERHARLK_					0	0	0			REV__ENSG00000164619|ENST00000649409|BMPER	REV__ENSG00000164619|ENST00000649409|BMPER	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7772521972656	2	506.777085	1011.53962	0.09701	4.9162E-05	0.39716	0.00020127	0.49417	0.00025044	506.77684387835916	36.318	0.12988	36.318	36.222	36.352	0					7	5	2	0	0	0	0.67394	1	13004	13004		37.159	1.5408	1	32076	+		6616	15996	3339	3367	6769	6769					0.03430874099626635
CESCLCLSGR	10	Unmodified	_CESCLCLSGR_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.723876953125	2	535.725012	1069.43547	-0.55931	-0.00029963	-1.7477	-0.00093626	-2.307	-0.0012359	535.7240873067949	16.969	0.10961	16.969	16.921	17.031	0					8	4	2	0	0	0	0.58189	1	4159	4159		36.447	1.246	1	99408			6617	11713	3340	3368	6770	6770					-0.09646956834421871
CESFVASSS	9	Unmodified	_CESFVASSS_					0	0	0			REV__ENSG00000165406|ENST00000453424|MARCHF8	REV__ENSG00000165406|ENST00000453424|MARCHF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.6893310546875	2	458.689475	915.364398	-0.41405	-0.00018992	-0.13278	-6.0903E-05	-0.54683	-0.00025083	458.6894872299229	17.116	0.13927	17.116	17.064	17.203	0					6	4	2	0	0	0	0.53083	1	4020	4020		29.15	0.89528	1	164060	+		6618	16040	3341	3369	6771	6771					-0.09667010275916255
CETLPKFVNN	10	Unmodified	_CETLPKFVNN_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.78955078125	2	582.789524	1163.56449	1.382	0.00080543	-0.031001	-1.8067E-05	1.351	0.00078736	582.7894701585533	44.664	0.75436	44.664	44.112	44.867	0					67	42	3	0	0	0	0.55603	1	17376	17376		39.253	1.4413	1	234730	+		6619	16601	3342	3370	6772	6772					-0.010745356082907165
CEWAFFNWR	9	Unmodified	_CEWAFFNWR_					0	0	0			REV__ENAM|p.R368C|1|0.47|ENSG00000132464|chr4:70642528-70642528|C/T|missense_variant	REV__ENAM|p.R368C|1|0.47|ENSG00000132464|chr4:70642528-70642528|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	629.7774047851562	2	629.776751	1257.53895	1.4619	0.00092065	0.32213	0.00020287	1.784	0.0011235	629.7772494732098	46.797	0.30929	46.797	46.681	46.991	0					49	17	4	0	0	0	0.39215	1	17924	17924		42.396	4.5846	1	249580	+		6620	12798	3343	3371	6773	6773					-0.07951965340089373
CFAFTLLNHQ	10	Unmodified	_CFAFTLLNHQ_					0	0	0		ENST00000444719.5_1_7:156619363-156629563:-|nuORF	ENST00000444719.5_1_7:156619363-156629563:-|nuORF	ENST00000444719.5_1_7:156619363-156629563:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.2935791015625	2	597.292233	1192.56991	3.1645	0.0018901	-0.82054	-0.0004901	2.3439	0.0014	597.2916538710466	22.063	0.36719	22.063	21.953	22.321	0					21	7	4	0	0	0	0.39566	1	7320	7320		56.721	1.9447	1	1126900			6621	9606	3344	3372	6774	6774					-0.018668120258098497
CFAYQVAK	8	Unmodified	_CFAYQVAK_					0	0	0		ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3;ENST00000380987.2_1_13:28578191-28599431:-|nuORF	ENSG00000122025|ENST00000241453|FLT3	ENSG00000122025|ENST00000241453|FLT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.23297119140625	2	465.231113	928.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.289	1	41.289	40.789	41.789	0								0	0	0	1.7419	1	16237	16237		28.254	2.8041	1				6622	3247	3345	3373	6775	6775					-0.019412290374248187
CFCSCHCNC	9	Unmodified	_CFCSCHCNC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.13531494140625	2	510.136661	1018.25877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.355	1	49.355	48.855	49.855	0								0	0	0	0.40728	1	14931	14931		1.2052	1.2052	1				6623	9866	3346	3374	6776	6776					-0.2496303226071177
CFDYEVKI	8	Unmodified	_CFDYEVKI_					0	0	0		nc|ENSG00000091181|Q01344-3|IL5RA;nc|ENSG00000091181|Q01344-2|IL5RA;nc|ENSG00000091181|Q01344-4|IL5RA;ENSG00000091181|ENST00000446632|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7466735839844	2	508.741511	1015.46847	0.95351	0.00048509	3.558	0.0018101	4.5115	0.0022952	509.24260903320396	32.874	0.1396	32.874	32.782	32.922	0					7	5	2	0	0	0	0.66372	1	10670	10670		38.806	4.6336	1	34091			6624	1855	3347	3375	6777	6777					-0.03864683448421147
CFELIREPA	9	Unmodified	_CFELIREPA_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7705078125	2	539.273509	1076.53247	0.68222	0.0003679	-3.2903	-0.0017744	-2.6081	-0.0014065	539.7726469747952	35.824	0.51257	35.824	35.637	36.149	0					22	10	3	0	0	0	0.54267	1	13816	13816		27.882	3.3631	1	99893	+		6625	14673	3348	3376	6778	6778					-0.002739032914632844
CFEPANQM	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))FEPANQM_	C(1)FEPANQM		C(44)FEPANQM		0	1	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.69915771484375	2	498.69932	995.384087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.431	1	34.431	33.931	34.931	0								0	0	0	1.7419	1	13198	13198		44.117	13.613	1				6626	3319	3349	3377	6779	6779	130				-0.11378957536805956
CFFVVAHVK	9	Unmodified	_CFFVVAHVK_					0	0	0		nc|ENSG00000157111|Q8WVE6-2|TMEM171;ENSG00000157111|ENST00000454765|TMEM171	nc|ENSG00000157111|Q8WVE6-2|TMEM171	nc|ENSG00000157111|Q8WVE6-2|TMEM171	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.5246276855469	3	350.524879	1048.55281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.132	1	20.132	19.632	20.632	0								0	0	0	0.21054	1	6342	6342		49.442	10.727	1				6627	5201	3350	3378	6780	6780					0.030473121589920993
CFGLRGLLH	9	Unmodified	_CFGLRGLLH_					0	0	0		ADAM9|p.Y678Wfs*15|1|0.05|ENSG00000168615|chr8:39083037-39083038|-/GGAAACC|frameshift_variant;nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	ADAM9|p.Y678Wfs*15|1|0.05|ENSG00000168615|chr8:39083037-39083038|-/GGAAACC|frameshift_variant	ADAM9|p.Y678Wfs*15|1|0.05|ENSG00000168615|chr8:39083037-39083038|-/GGAAACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2807312011719	2	508.278929	1014.54331	0.98704	0.00050169	1.3846	0.00070375	2.3716	0.0012054	508.2796536757107	20.586	0.10089	20.586	20.493	20.594	0					6	2	3	0	0	0	0.30268	1	6401	6401		50.025	2.3672	1	204050			6628	55	3351	3379	6781	6781					0.036615438734884265
CFHITVFVA	9	Unmodified	_CFHITVFVA_					0	0	0			REV__nc|ENSG00000214447|A6NFU0|FAM187A	REV__nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.76806640625	2	518.767863	1035.52117	1.1058	0.00057366	-0.88842	-0.00046088	0.21739	0.00011277	518.7674032377103	24.469	0.21737	24.469	24.41	24.628	0					7	4	2	0	0	0	0.49003	1	8581	8581		33.516	5.2613	1	155700	+		6629	21209	3352	3380	6782	6782					0.004833194050434031
CFIYHIKR	8	Unmodified	_CFIYHIKR_					0	0	0			REV__ENSG00000184166|ENST00000641833|OR1D2	REV__ENSG00000184166|ENST00000641833|OR1D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.2958984375	2	540.294579	1078.57461	-0.029992	-1.6205E-05	2.0019	0.0010816	1.9719	0.0010654	540.2959330286153	36.665	0.089752	36.665	36.609	36.699	0					7	4	2	0	0	0	0.55361	1	12419	12419		54.765	1.828	1	47328	+		6630	16968	3353	3381	6783	6783					0.03846116907584474
CFLILNTQL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))FLILNTQL_	C(1)FLILNTQL		C(77)FLILNTQL		0	1	0			REV__ENST00000565499.1_1_16:21658349-21663919:-|nuORF	REV__ENST00000565499.1_1_16:21658349-21663919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.3134765625	2	561.30481	1120.59507	1.8306	0.0010275	-3.9928	-0.0022412	-2.1621	-0.0012136	561.3021740612342	39.425	0.13634	39.425	39.327	39.463	0					8	4	3	0	0	0	0.10915	1	15470	15470		77.318	10.888	1	41674	+		6631	15092	3354	3382	6784	6784	560				0.039592427767274785
CFLMRYTY	8	Unmodified	_CFLMRYTY_					0	0	0			REV__nc|ENSG00000168546|O00451-2|GFRA2	REV__nc|ENSG00000168546|O00451-2|GFRA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.75146484375	2	548.751356	1095.48816	-1.505	-0.00082588	1.2668	0.00069518	-0.23817	-0.0001307	548.7521679090815	31.663	0.29535	31.663	31.545	31.84	0					20	8	3	0	0	0	0.4723	1	10919	10919		62.978	4.1965	1	451570	+		6632	16267	3355	3383	6785	6785					-0.05576630709288111
CFLSTLLSQ	9	Unmodified	_CFLSTLLSQ_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2;ALPK2|p.G256Vfs*6|1|0.03|ENSG00000198796|chr18:58580011-58580012|-/AACC|frameshift_variant;ALPK2|p.L356Yfs*2|3|0.3|ENSG00000198796|chr18:58579709-58579709|A/-|frameshift_variant;ALPK2|p.K523Rfs*15|6|0.3|ENSG00000198796|chr18:58579208-58579208|T/-|frameshift_variant	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.26422119140625	2	506.26261	1010.51067	0.83888	0.0004247	2.1805	0.0011039	3.0193	0.0015286	506.26403785210306	37.294	0.50084	37.294	37.179	37.68	0					31	14	4	0	0	0	0.085655	1	14106	14106		82.75	0	1	2754500			6633	7610	3356	3384	6786	6786					0.005832919599697561
CFLSTLLSQ	9	Unmodified	_CFLSTLLSQ_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2;ALPK2|p.G256Vfs*6|1|0.03|ENSG00000198796|chr18:58580011-58580012|-/AACC|frameshift_variant;ALPK2|p.L356Yfs*2|3|0.3|ENSG00000198796|chr18:58579709-58579709|A/-|frameshift_variant;ALPK2|p.K523Rfs*15|6|0.3|ENSG00000198796|chr18:58579208-58579208|T/-|frameshift_variant	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2642517089844	2	506.26261	1010.51067	-0.23652	-0.00011974	2.8085	0.0014218	2.572	0.0013021	506.2644361420241	37.178	0.46087	37.178	37.023	37.484	0					31	9	5	0	0	0	0.026538	1	14501	14501		112.41	0	1	3894600			6634	7610	3356	3384	6787	6787					0.005832919599697561
CFNAKLKI	8	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))C(Carbamidomethyl (C))FNAKLKI_	C(1)FNAKLKI		C(56)FNAKLKI		1	1	0		ENSG00000162849|ENST00000407071|KIF26B;KIF26B|p.E2022K|1|0.13|ENSG00000162849|chr1:245698923-245698923|G/A|missense_variant;nc|ENSG00000162849|Q2KJY2-2|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2863159179688	2	518.28642	1034.55829	0.25289	0.00013107	-0.39385	-0.00020413	-0.14096	-7.306E-05	518.2865652641619	42.472	0.11739	42.472	42.418	42.535	0					8	3	3	0	0	0	0.54629	1	16953	16953		55.504	7.8469	1	84685			6635	5504	3357	3385	6788	6788	227				0.0423899095080742
CFNWRDGAR	9	Unmodified	_CFNWRDGAR_					0	0	0		tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7567749023438	2	562.75635	1123.49815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.651	1	41.651	41.151	42.151	0								0	0	0	0.29774	1	16375	16375		35.618	2.1027	1				6636	22911	3358	3386	6789	6789					-0.05866306659709153
CFQAASSTM	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))FQAASSTM_	C(1)FQAASSTM		C(82)FQAASSTM		0	1	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7042541503906	2	501.704602	1001.39465	0.69294	0.00034765	-1.3448	-0.0006747	-0.65187	-0.00032705	501.7040754739676	31.455	0.25532	31.455	31.413	31.668	0					11	6	3	0	0	0	0.087861	1	11467	11467		82.241	34.325	1	190870			6637	2754	3359	3387	6790	6790	109				-0.10598974882373113
CFQAASSTM	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))FQAASSTM_	C(1)FQAASSTM		C(57)FQAASSTM		0	1	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7042541503906	2	501.704602	1001.39465	0.038904	1.9518E-05	-0.096892	-4.8611E-05	-0.057988	-2.9093E-05	501.70420354973567	31.516	0.15125	31.516	31.438	31.589	0					5	3	2	0	0	0	0.24095	1	11891	11891		56.721	22.549	1	111900			6638	2754	3359	3387	6791	6791	109				-0.10598974882373113
CFQAASSTM	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))FQAASSTM_	C(1)FQAASSTM		C(46)FQAASSTM		0	1	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7046813964844	2	501.704602	1001.39465	-0.55992	-0.00028092	-0.16522	-8.2892E-05	-0.72515	-0.00036381	501.70483753708504	31.429	0.21833	31.429	31.319	31.537	0					10	4	3	0	0	0	0.35021	1	11786	11786		45.972	7.1661	1	171210			6639	2754	3359	3387	6792	6792	109				-0.10598974882373113
CFRAALGGVKE	11	Unmodified	_CFRAALGGVKE_					0	0	0		ENST00000441363.1_1_6:74009094-74009619:+|nuORF	ENST00000441363.1_1_6:74009094-74009619:+|nuORF	ENST00000441363.1_1_6:74009094-74009619:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.8057861328125	2	575.805508	1149.59646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.805	1	29.805	29.305	30.305	0								0	0	0	0.36092	1	10683	10683		43.651	2.8726	1				6640	9578	3360	3388	6793	6793					0.02764876865489896
CFRKHVQEG	9	Unmodified	_CFRKHVQEG_					0	0	0			REV__SI|p.R250C|1|0.41|ENSG00000090402|chr3:165065320-165065320|G/A|missense_variant	REV__SI|p.R250C|1|0.41|ENSG00000090402|chr3:165065320-165065320|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.275390625	2	552.274375	1102.5342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.71	1	19.71	19.21	20.21	0								0	0	0	0.3368	1	5386	5386		27.882	0.83493	1		+		6641	21515	3361	3389	6794	6794					-0.012968494828328403
CFSFLIKKK	9	Unmodified	_CFSFLIKKK_					0	0	0			REV__ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	REV__ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.3270263671875	2	557.328088	1112.64162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.462	1	12.462	11.962	12.962	0								0	0	0	0.38123	1	2465	2465		16.473	0.83134	1		+		6642	15228	3362	3390	6795	6795					0.08980727398670751
CFSPLSTAY	9	Unmodified	_CFSPLSTAY_					0	0	0			REV__ENSG00000100036|ENST00000343605|SLC35E4	REV__ENSG00000100036|ENST00000343605|SLC35E4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7276306152344	2	494.725861	987.437169	2.8123	0.0013913	0.41059	0.00020313	3.2229	0.0015945	494.72614275576234	20.469	0.41591	20.469	20.36	20.776	0					10	8	2	0	0	0	0.43426	1	6521	6521		38.806	1.7777	1	1000900	+		6643	13510	3363	3391	6796	6796					-0.057052564825198715
CFTCSCCCL	9	Unmodified	_CFTCSCCCL_					0	0	0		ENST00000460758.1_1_3:48511100-48514492:-|nuORF;nc|ENSG00000164054|Q8N114-4|SHISA5;ENST00000466424.5_1_3:48509548-48511229:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000494854.5_1_3:48510739-48514492:-|nuORF;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5	ENST00000460758.1_1_3:48511100-48514492:-|nuORF	ENST00000460758.1_1_3:48511100-48514492:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.6521911621094	2	491.651612	981.288672	-0.54044	-0.00026571	0.71284	0.00035047	0.17239	8.4757E-05	491.652044736271	49.644	0.52232	49.644	49.403	49.925	0					53	21	3	0	0	0	0.61124	1	17852	17852		14.664	4.4793	1	216440			6644	5644	3364	3392	6797	6797					-0.20272093315395523
CFVFFGPI	8	Unmodified	_CFVFFGPI_					0	0	0			REV__ENST00000313334.12_1_1:52552599-52552851:+|nuORF	REV__ENST00000313334.12_1_1:52552599-52552851:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2326965332031	2	465.233125	928.451696	-0.68182	-0.00031721	-0.263	-0.00012236	-0.94482	-0.00043956	465.2329958480181	19.478	1.46	19.478	19.339	20.799	0					84	32	5	0	0	0	0.63381	1	5869	5869		43.626	11.671	1	9783100	+		6645	18282	3365	3393	6798	6798					-0.015391395436950006
CFVTSFEWCS	10	Unmodified	_CFVTSFEWCS_					0	0	0		ENSG00000269190|ENST00000292852|FBXO17	ENSG00000269190|ENST00000292852|FBXO17	ENSG00000269190|ENST00000292852|FBXO17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.7396240234375	2	604.741185	1207.46782	0.40302	0.00024372	-4.2614	-0.002577	-3.8584	-0.0023333	604.7390659094829	13.312	0.15812	13.312	13.218	13.376	0					7	3	3	0	0	0	0.76124	1	3229	3229		10.866	1.1599	1	329920			6646	8082	3366	3394	6799	6799					-0.127618461597649
CGAAPKVK	8	Unmodified	_CGAAPKVK_					0	0	0		ENST00000579114.5_1_17:10633139-10657581:+|nuORF	ENST00000579114.5_1_17:10633139-10657581:+|nuORF	ENST00000579114.5_1_17:10633139-10657581:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.2206726074219	2	387.220549	772.426544	0.44261	0.00017139	-0.40433	-0.00015656	0.038286	1.4825E-05	387.22047300803854	18.08	0.16784	18.08	17.971	18.139	0					5	3	2	0	0	0	0.57802	1	5498	5498		52.299	7.7681	1	412910			6647	10858	3367	3395	6800	6800					0.03122805653731575
CGDFSRAI	8	Unmodified	_CGDFSRAI_					0	0	0		WDR76|p.R386H|1|0.28|ENSG00000092470|chr15:43851211-43851211|G/A|missense_variant;ENSG00000092470|ENST00000263795|WDR76	WDR76|p.R386H|1|0.28|ENSG00000092470|chr15:43851211-43851211|G/A|missense_variant	WDR76|p.R386H|1|0.28|ENSG00000092470|chr15:43851211-43851211|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7025451660156	2	434.70272	867.390887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.621	1	40.621	40.121	41.121	0								0	0	0	1.7419	1	16010	16010		47.916	1.9636	1				6648	1876	3368	3396	6801	6801					-0.048112765939322344
CGFAAMKDVRT	11	Unmodified	_CGFAAMKDVRT_					0	0	0		EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.1939392089844	3	400.195093	1197.56345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.046	1	24.046	23.546	24.546	0								0	0	0	0.2788	1	7041	7041		55.084	6.4824	1				6649	879	3369	3397	6802	6802					-0.02743073248871042
CGFLILQIRC	10	Unmodified	_CGFLILQIRC_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	389.2127685546875	3	389.212195	1164.61476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.923	1	20.923	20.423	21.423	0								0	0	0	0.4201	1	5678	5678		16.717	0	1				6650	10164	3370	3398	6803	6803					0.03903295515829086
CGGGRRQGGAL	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GGGRRQGGAL_	C(1)GGGRRQGGAL		C(42)GGGRRQGGAL		0	1	0			REV__ENST00000461555.1_1_17:16472062-16472293:-|nuORF	REV__ENST00000461555.1_1_17:16472062-16472293:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.5171203613281	3	363.517446	1087.53051	-0.95554	-0.00034736	0.11349	4.1257E-05	-0.84205	-0.0003061	363.5174676703622	20.329	0.1868	20.329	20.26	20.447	0					12	5	3	0	0	0	0.52595	1	5660	5660		42.338	42.338	1	1273300	+		6651	18888	3371	3399	6804	6804	676				-0.009755192567126869
CGGRVCAFD	9	Unmodified	_CGGRVCAFD_					0	0	0		ENSG00000213203|ENST00000307194|GIMAP1	ENSG00000213203|ENST00000307194|GIMAP1	ENSG00000213203|ENST00000307194|GIMAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.1935729980469	2	464.194205	926.373857	-2.3656	-0.0010981	0.79378	0.00036847	-1.5719	-0.00072965	464.19448575694213	18.272	0.49349	18.272	18.084	18.578	0					26	13	2	0	0	0	0.50461	1	4708	4708		31.955	31.955	1	192980			6652	7785	3372	3400	6805	6805					-0.09227520471392836
CGKFFPTFV	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GKFFPTFV_	C(1)GKFFPTFV		C(61)GKFFPTFV		0	1	0			REV__ENST00000529467.1_1_8:42620195-42623609:-|nuORF	REV__ENST00000529467.1_1_8:42620195-42623609:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7745971679688	2	551.773145	1101.53174	1.8175	0.0010029	0.98859	0.00054548	2.8061	0.0015483	551.7736003449166	29.299	0.35915	29.299	29.19	29.549	0					22	7	4	0	0	0	0.20551	1	10703	10703		60.972	60.972	1	2000900	+		6653	12494	3373	3401	6806	6806	491				-0.0149669794050169
CGKLFTQR	8	Unmodified	_CGKLFTQR_					0	0	0		ZNF501|p.F30L|2|0.13|ENSG00000186446|chr3:44734511-44734511|C/A|missense_variant	ZNF501|p.F30L|2|0.13|ENSG00000186446|chr3:44734511-44734511|C/A|missense_variant	ZNF501|p.F30L|2|0.13|ENSG00000186446|chr3:44734511-44734511|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7587890625	2	476.755287	951.496021	3.5254	0.0016807	3.3376	0.0015912	6.863	0.003272	476.75673882992135	29.501	0.22577	29.501	29.411	29.637	0					10	8	2	0	0	0	0.6088	1	9592	9592		47.657	5.1829	1	48375			6654	23159	3374	3402	6807	6807					0.01833264602487361
CGPRPCLLHKG	11	Unmodified	_CGPRPCLLHKG_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.2103271484375	3	394.207444	1179.6005	3.1782	0.0012529	2.6497	0.0010445	5.8279	0.0022974	394.20886826362715	22.631	0.91416	22.631	22.455	23.369	0					26	18	4	0	0	0	0.71641	1	7562	7562		26.063	1.5442	1	1224800			6655	2116	3375	3403	6808	6808					0.01788643087525088
CGPVLTWME	9	Unmodified	_CGPVLTWME_					0	0	0		nc|ENSG00000004777|O14559-12|ARHGAP33;ARHGAP33|p.P717Lfs*79|1|0.23|ENSG00000004777|chr19:35787194-35787194|C/-|frameshift_variant;nc|ENSG00000004777|O14559-10|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33;ARHGAP33|p.P897Hfs*115|1|0.39|ENSG00000004777|chr19:35787733-35787733|C/-|frameshift_variant;ENSG00000004777|ENST00000007510|ARHGAP33	nc|ENSG00000004777|O14559-12|ARHGAP33	nc|ENSG00000004777|O14559-12|ARHGAP33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2346801757812	2	518.235538	1034.45652	0.052057	2.6978E-05	-1.238	-0.0006416	-1.186	-0.00061462	518.2348781241179	11.545	0.19004	11.545	11.463	11.653	0					16	7	4	0	0	0	0.61124	1	2229	2229		12.207	3.9756	1	490450			6656	208	3376	3404	6809	6809					-0.05932623463240816
CGQLPPWSF	9	Unmodified	_CGQLPPWSF_					0	0	0		nc|ENSG00000162413|Q9UJP4-2|KLHL21;ENSG00000162413|ENST00000377658|KLHL21	nc|ENSG00000162413|Q9UJP4-2|KLHL21	nc|ENSG00000162413|Q9UJP4-2|KLHL21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7428588867188	2	517.741845	1033.46914	3.3299	0.001724	-1.3602	-0.00070422	1.9698	0.0010198	517.7411810622383	31.199	0.21203	31.199	31.093	31.305	0					6	4	2	0	0	0	0.25109	1	11652	11652		55.504	2.1528	1	390570			6657	5460	3377	3405	6810	6810					-0.04625844008705826
CGRTVISCLK	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GRTVISCLK_	C(1)GRTVISCLK		C(47)GRTVISC(-47)LK		0	1	0			REV__nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	REV__nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.80126953125	2	568.799368	1135.58418	3.4549	0.0019651	0.098532	5.6045E-05	3.5534	0.0020212	568.7992723856216	32.093	0.26913	32.093	31.984	32.253	0					11	5	3	0	0	0	0.21754	1	12080	12080		77.318	77.318	2	679520	+		6658	20988	3378	3406	6811	6811	724				0.021815171307707715
CGRWLVYK	8	Unmodified	_CGRWLVYK_					0	0	0			REV__AFM|p.I98Yfs*62|1|0.16|ENSG00000079557|chr4:73485878-73485878|A/-|frameshift_variant	REV__AFM|p.I98Yfs*62|1|0.16|ENSG00000079557|chr4:73485878-73485878|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.77197265625	2	512.77348	1023.53241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.125	1	15.125	14.625	15.625	0								0	0	0	1.7419	1	3228	3228		18.324	1.6194	1		+		6659	12102	3379	3407	6812	6812					0.021581414992056125
CGTMRKETW	9	Unmodified	_CGTMRKETW_					0	0	0		ENST00000486482.1_1_19:10222066-10222294:+|nuORF	ENST00000486482.1_1_19:10222066-10222294:+|nuORF	ENST00000486482.1_1_19:10222066-10222294:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.257080078125	2	556.254794	1110.49503	3.5325	0.001965	0.80484	0.0004477	4.3374	0.0024127	556.2551277061357	39.86	0.4585	39.86	39.718	40.176	0					19	10	3	0	0	0	0.087861	1	15774	15774		82.241	2.5279	1	595910			6660	10023	3380	3408	6813	6813					-0.05579317828710373
CGVIDTFEN	9	Unmodified	_CGVIDTFEN_					0	0	0		ENST00000326291.10_1_13:73356367-73357596:+|nuORF	ENST00000326291.10_1_13:73356367-73357596:+|nuORF	ENST00000326291.10_1_13:73356367-73357596:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2181701660156	2	499.2184	996.422247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.025	1	31.025	30.525	31.525	0								0	0	0	0.19749	1	10636	10636		51.335	8.9393	1				6661	8648	3381	3409	6814	6814					-0.07610748350498397
CGVLTIGAL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GVLTIGAL_	C(1)GVLTIGAL		C(52)GVLTIGAL		0	1	0			REV__ENSG00000138834|ENST00000610761|MAPK8IP3	REV__ENSG00000138834|ENST00000610761|MAPK8IP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2497863769531	2	452.252046	902.489538	-0.066169	-2.9925E-05	-3.4843	-0.0015758	-3.5505	-0.0016057	452.25050734049415	34.164	0.29076	34.164	34.13	34.42	0					12	9	2	0	0	0	0.27781	1	12077	12077		52.299	8.1824	1	78225	+		6662	15005	3382	3410	6815	6815	556				0.03439326651130159
CGVTAPMFTF	10	Unmodified	_CGVTAPMFTF_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2450561523438	2	537.243363	1072.47217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.546	1	20.546	20.046	21.046	0								0	0	0	0.4201	1	5518	5518		20.947	2.6848	1				6663	3137	3383	3411	6816	6816					-0.06116336946206502
CGYGFTLL	8	Unmodified	_CGYGFTLL_					0	0	0		nc|ENSG00000274523|Q96I51-2|RCC1L;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.21051025390625	2	437.212389	872.410226	-3.0735	-0.0013438	-1.9995	-0.00087422	-5.073	-0.002218	437.2115773302372	37.244	0.20465	37.244	37.185	37.39	0					20	10	3	0	0	0	0.59916	1	13325	13325		49.211	12.182	1	123750			6664	8100	3384	3412	6817	6817					-0.03108320303022083
CHACHCQDGT	10	Unmodified	_CHACHCQDGT_					0	0	0		nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP;KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant;KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant;KCP|p.D914Tfs*111|1|0.3|ENSG00000135253|chr7:128885218-128885218|G/-|frameshift_variant;KCP|p.Q841Ifs*185|1|0.15|ENSG00000135253|chr7:128886727-128886728|-/TC|frameshift_variant;nc|ENSG00000135253|Q6ZWJ8-4|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.6812744140625	2	537.681136	1073.34772	0.78714	0.00042323	-1.9673	-0.0010578	-1.1801	-0.00063453	537.6808938469619	27.954	1.1257	27.954	27.148	28.273	0					117	39	4	0	0	0	0.73697	1	8391	8391		15.642	1.8665	1	249480			6665	3979	3385	3413	6818	6818					-0.18602157705163336
CHDCLVKYL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))HDCLVKYL_	C(0.5)HDC(0.5)LVKYL		C(0)HDC(0)LVKYL		0	1	0		ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.7745971679688	2	575.772819	1149.53109	3.31	0.0019058	0.43774	0.00025204	3.7477	0.0021578	575.7728572473093	43.208	0.44041	43.208	43.051	43.492	0					38	15	4	0	0	0	0.13519	1	17265	17265		71.296	7.9894	2	725480			6666	7295	3386	3414	6819	6819	307;308				-0.03769860651868839
CHHGTDFCCAQ	11	Unmodified	_CHHGTDFCCAQ_					0	0	0		ENST00000530831.1_1_11:71208417-71209628:+|nuORF	ENST00000530831.1_1_11:71208417-71209628:+|nuORF	ENST00000530831.1_1_11:71208417-71209628:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.2181396484375	2	611.215343	1220.41613	2.9515	0.001804	0.55427	0.00033878	3.5058	0.0021428	611.2155889398998	49.889	0.35451	49.889	49.731	50.085	0					34	15	4	0	0	0	0.80429	1	19678	19678		14.137	3.2716	1	305350			6667	10429	3387	3415	6820	6820					-0.1852591312531331
CHLRSRCE	8	Unmodified	_CHLRSRCE_					0	0	0			REV__ENST00000586479.1_1_19:11462501-11464130:+|nuORF	REV__ENST00000586479.1_1_19:11462501-11464130:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2300720214844	2	502.231653	1002.44875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.007	1	15.007	14.507	15.507	0								0	0	0	1.7419	1	3187	3187		24.203	1.1603	1		+		6668	20484	3388	3416	6821	6821					-0.05237337940150155
CHPHTPLNLE	10	Unmodified	_CHPHTPLNLE_					0	0	0			REV__TEX14|p.A467Sfs*11|3|0.24|ENSG00000121101|chr17:58602546-58602547|-/T|frameshift_variant	REV__TEX14|p.A467Sfs*11|3|0.24|ENSG00000121101|chr17:58602546-58602547|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.7806396484375	2	580.77949	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.553	1	19.553	19.053	20.053	0								0	0	0	0.3428	1	5919	5919		44.117	1.7207	1		+		6669	14304	3389	3417	6822	6822					-0.028962865482981215
CHRLSCSVSV	10	Unmodified	_CHRLSCSVSV_					0	0	0		ENST00000472067.1_1_7:142991698-142998016:+|nuORF	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7610473632812	2	545.760243	1089.50593	0.50785	0.00027717	0.059921	3.2702E-05	0.56777	0.00030987	545.760367560075	18.968	0.16658	18.968	18.898	19.065	0					8	5	2	0	0	0	0.43008	1	5059	5059		52.937	0	1	109400			6670	9862	3390	3418	6823	6823					-0.03523915454456983
CHRYGHDKY	9	Unmodified	_CHRYGHDKY_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.7598266601562	2	589.761632	1177.50871	-1.7663	-0.0010417	2.6158	0.0015427	0.84952	0.00050101	589.7611648659494	27.574	0.3002	27.574	27.443	27.743	0					10	7	2	0	0	0	0.37197	1	9067	9067		44.117	1.2525	1	72510	+		6671	17693	3391	3419	6824	6824					-0.07294324005260933
CHSNSEPHK	9	Unmodified	_CHSNSEPHK_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.724853515625	2	519.724715	1037.43488	0.063542	3.3024E-05	0.082213	4.2728E-05	0.14575	7.5752E-05	519.7248135044334	16.814	0.20921	16.814	16.691	16.9	0					14	5	4	0	0	0	0.33044	1	4621	4621		47.657	10.498	1	1789900	+		6672	14858	3392	3420	6825	6825					-0.08234292167617241
CHSPNSPI	8	Unmodified	_CHSPNSPI_					0	0	0			REV__EFEMP1|p.R156C|1|0.16|ENSG00000115380|chr2:55917716-55917716|G/A|missense_variant	REV__EFEMP1|p.R156C|1|0.16|ENSG00000115380|chr2:55917716-55917716|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.69500732421875	2	427.694895	853.375237	-0.6554	-0.00028031	0.75266	0.00032191	0.097257	4.1596E-05	427.6953303642324	31.917	0.24873	31.917	31.811	32.059	0					11	6	2	0	0	0	0.66238	1	11667	11667		39.021	1.993	1	96732	+		6673	12775	3393	3421	6826	6826					-0.05731563110987281
CHVIAAVL	8	Unmodified	_CHVIAAVL_					0	0	0			REV__ENSG00000172478|ENST00000388934|MAB21L4	REV__ENSG00000172478|ENST00000388934|MAB21L4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.23785400390625	2	413.236199	824.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.019	1	47.019	46.519	47.519	0								0	0	0	1.7419	1	18793	18793		24.504	1.4615	1		+		6674	16467	3394	3422	6827	6827					0.03859378687820936
CHWLLWASG	9	Unmodified	_CHWLLWASG_					0	0	0		ENST00000446203.1_1_13:100060234-100060986:-|nuORF	ENST00000446203.1_1_13:100060234-100060986:-|nuORF	ENST00000446203.1_1_13:100060234-100060986:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7545776367188	2	536.755287	1071.49602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.103	1	18.103	17.603	18.603	0								0	0	0	0.39312	1	4674	4674		12.959	1.3233	1				6675	9617	3395	3423	6828	6828					-0.03686735397513985
CHYPFKKLF	9	Unmodified	_CHYPFKKLF_					0	0	0			REV__ENST00000532132.5_1_11:118885772-118886305:+|nuORF	REV__ENST00000532132.5_1_11:118885772-118886305:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	591.8095703125	2	591.810062	1181.60557	-1.7829	-0.0010551	0.17058	0.00010095	-1.6123	-0.00095417	591.8092385665303	39.695	0.2223	39.695	39.596	39.818	0					12	11	2	0	0	0	0.16002	1	14146	14146		60.294	1.512	1	62013	+		6676	20070	3396	3424	6829	6829					0.02203270221798448
CIAAPLSLAQ	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))IAAPLSLAQ_	C(1)IAAPLSLAQ		C(44)IAAPLSLAQ		0	1	0			REV__ENST00000413240.1_1_X:118527189-118527384:-|nuORF	REV__ENST00000413240.1_1_X:118527189-118527384:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2805786132812	2	522.281334	1042.54812	-1.3071	-0.00068267	-0.6066	-0.00031681	-1.9137	-0.00099949	522.2811193579392	39.534	0.22139	39.534	39.431	39.653	0					27	11	3	0	0	0	0.51121	1	14069	14069		44.117	11.304	1	183640	+		6677	19013	3397	3425	6830	6830	682				0.02854383225599122
CIALLWLK	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))IALLWLK_	C(1)IALLWLK		C(69)IALLWLK		0	1	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8028564453125	2	508.801706	1015.58886	1.1544	0.00058738	1.673	0.00085121	2.8274	0.0014386	508.80274388685257	41.51	0.11518	41.51	41.454	41.569	0					10	4	3	0	0	0	0.41446	1	16327	16327		69.093	6.9856	1	225610	+		6678	15050	3398	3426	6831	6831	558				0.08168769335873094
CIARWLAL	8	Unmodified	_CIARWLAL_					0	0	0			REV__ENST00000395491.6_1_17:21217545-21218022:+|nuORF	REV__ENST00000395491.6_1_17:21217545-21218022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2715148925781	2	473.270573	944.526593	-0.5057	-0.00023933	1.9869	0.00094035	1.4812	0.00070102	473.27132612271646	34.69	0.15001	34.69	34.609	34.759	0					6	4	2	0	0	0	0.6282	1	12310	12310		44.531	5.5096	1	97555	+		6679	18879	3399	3427	6832	6832					0.05211042987525616
CIASLSRF	8	Unmodified	_CIASLSRF_					0	0	0			REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF	REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.23724365234375	2	448.736563	895.458573	0.62178	0.00027901	2.6281	0.0011793	3.2499	0.0014583	448.7393363412609	29.209	0.41071	29.209	29.046	29.456	0					32	10	4	0	0	0	0.61433	1	10382	10382		46.766	2.6496	1	1722400	+		6680	20382	3400	3428	6833	6833					0.006661733368673595
CICPSAFRR	9	Unmodified	_CICPSAFRR_					0	0	0		ENST00000330701.5_1_8:144333181-144341984:+|nuORF;ENST00000520584.5_1_8:144333229-144335235:+|nuORF	ENST00000330701.5_1_8:144333181-144341984:+|nuORF	ENST00000330701.5_1_8:144333181-144341984:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7605590820312	2	526.760046	1051.50554	0.6321	0.00033297	0.59528	0.00031357	1.2274	0.00064654	526.7604326258264	21.397	0.81479	21.397	20.992	21.807	0					46	16	4	0	0	0	0.56424	1	6877	6877		25.574	5.0922	1	1594000			6681	8673	3401	3429	6834	6834					-0.018152903836380574
CIDILLEL	8	Unmodified	_CIDILLEL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2642517089844	2	466.262079	930.509605	2.6317	0.001227	1.4985	0.00069868	4.1301	0.0019257	466.26281713006426	20.968	0.16583	20.968	20.86	21.025	0					8	3	3	0	0	0	0.68754	1	6763	6763		35.201	1.7077	1	897590			6682	1390	3402	3430	6835	6835					0.04157077591048619
CIGVAQYILS	10	Unmodified	_CIGVAQYILS_					0	0	0			REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.78466796875	2	533.78371	1065.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.524	1	38.524	38.024	39.024	0								0	0	0	0.38322	1	12992	12992		35.618	5.1146	1		+		6683	20950	3403	3431	6836	6836					0.022712673683372486
CIILGDEALI	10	Unmodified	_CIILGDEALI_					0	0	0			REV__tr|U7SNS1|U7SNS1_FUSNURsmDfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01737PE=4SV=1	REV__tr|U7SNS1|U7SNS1_FUSNURsmDfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01737PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2935791015625	2	530.291368	1058.56818	3.4381	0.0018232	1.1536	0.00061175	4.5917	0.002435	530.2918291516439	16.574	0.31416	16.574	16.367	16.681	0					14	6	3	0	0	0	0.26673	1	4603	4603		71.296	7.0884	1	3767300	+		6684	21816	3404	3432	6837	6837					0.041241341655450015
CIILLTSEP	9	Unmodified	_CIILLTSEP_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7747802734375	2	494.772811	987.531069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.254	1	22.254	21.754	22.754	0								0	0	0	0.16876	1	6521	6521		55.504	2.1528	1		+		6685	17543	3405	3433	6838	6838					0.03680462619774971
CIKQDSYI	8	Unmodified	_CIKQDSYI_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.23883056640625	2	485.239135	968.463718	0.84854	0.00041175	-0.97942	-0.00047525	-0.13088	-6.3507E-05	485.2385179567961	38.083	0.5624	38.083	37.886	38.449	0					16	12	2	0	0	0	0.73426	1	14930	14930		29.15	3.6994	1	167020	+		6686	15809	3406	3434	6839	6839					-0.02177567591161278
CIKTYVCTK	9	Unmodified	_CIKTYVCTK_					0	0	0			REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.548944203961612|0.3234029913481031|2.98|483.0|8|2|sense	REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.548944203961612|0.3234029913481031|2.98|483.0|8|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7705078125	2	529.772288	1057.53002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.251	1	15.251	14.751	15.751	0								0	0	0	0.24724	1	3980	3980		44.117	4.864	1		+		6687	20809	3407	3435	6840	6840					0.0035592497922607436
CILALRNGQ	9	Unmodified	_CILALRNGQ_					0	0	0			REV__ENST00000594950.5_1_19:58865471-58865783:+|nuORF	REV__ENST00000594950.5_1_19:58865471-58865783:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2766418457031	2	494.273844	986.533135	0.67565	0.00033396	3.3319	0.0016469	4.0076	0.0019808	494.276477522811	37.235	0.62639	37.235	36.801	37.428	0					38	19	4	0	0	0	0.45358	1	14577	14577		37.159	2.9866	1	282090	+		6688	20557	3408	3436	6841	6841					0.039329361482487
CILQTLGII	9	Unmodified	_CILQTLGII_					0	0	0		MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|4|1|sense	MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|4|1|sense	MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|4|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2928161621094	2	487.291171	972.567789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.747	1	51.747	51.247	52.247	0								0	0	0	0.31623	1	18441	18441		31.955	1.4512	1				6689	11360	3409	3437	6842	6842					0.08040759236359918
CINEGVKPASF	11	Unmodified	_CINEGVKPASF_					0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.7896728515625	2	582.789524	1163.56449	1.3848	0.00080702	-1.5805	-0.0009211	-0.19576	-0.00011408	582.7876776521185	43.875	0.1237	43.875	43.853	43.976	0					6	5	2	0	0	0	0.66915	1	17137	17137		30.569	3.876	1	51509			6690	11431	3410	3438	6843	6843					-0.010745356083134538
CIPRERSL	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))IPRERSL_	C(1)IPRERSL		C(96)IPRERSL		0	1	0		nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7796020507812	2	515.776751	1029.53895	0.032553	1.679E-05	-3.6615	-0.0018885	-3.629	-0.0018717	515.7751775661808	32.664	0.65178	32.664	32.531	33.182	0					29	17	3	0	0	0	0.25873	1	12124	12124		96.19	19.416	1	5127600			6691	6156	3411	3439	6844	6844	259				0.025360346599200057
CIQHLMKLGS	10	Unmodified	_CIQHLMKLGS_					0	0	0		ENST00000357277.7_1_X:17043263-17065533:+|nuORF	ENST00000357277.7_1_X:17043263-17065533:+|nuORF	ENST00000357277.7_1_X:17043263-17065533:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2987060546875	2	565.296462	1128.57837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.812	1	45.812	45.312	46.312	0								0	0	0	0.41253	1	18354	18354		26.693	2.1737	1				6692	8821	3412	3440	6845	6845					0.019224186191422632
CIRSKVANLK	10	Unmodified	_CIRSKVANLK_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.3347778320312	2	566.336975	1130.6594	-1.1687	-0.00066188	-1.1952	-0.00067688	-2.3639	-0.0013388	566.3362695746439	27.587	0.093506	27.587	27.522	27.616	0					4	2	2	0	0	0	0.38194	1	9044	9044		58.23	3.146	1	96874			6693	6629	3413	3441	6846	6846					0.09929442653515252
CIVFRVLQ	8	Unmodified	_CIVFRVLQ_					0	0	0		ENST00000469802.5_1_20:61464351-61467803:+|nuORF;ENST00000462700.5_1_20:61464351-61470045:+|nuORF	ENST00000469802.5_1_20:61464351-61467803:+|nuORF	ENST00000469802.5_1_20:61464351-61467803:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2848205566406	2	489.28368	976.552807	0.78117	0.00038221	1.6865	0.00082517	2.4676	0.0012074	489.28452968621	12.722	0.082258	12.722	12.686	12.768	0					4	2	2	0	0	0	0.65276	1	2748	2748		40.573	7.057	1	80311			6694	9744	3414	3442	6847	6847					0.06359312159020192
CIVSFKFF	8	Unmodified	_CIVSFKFF_					0	0	0		ENST00000522596.6_1_3:169513152-169513446:-|nuORF	ENST00000522596.6_1_3:169513152-169513446:-|nuORF	ENST00000522596.6_1_3:169513152-169513446:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7586669921875	2	495.759507	989.50446	-1.2235	-0.00060656	0.65787	0.00032615	-0.56562	-0.00028041	495.75989216481275	23.639	0.10886	23.639	23.567	23.676	0					6	4	2	0	0	0	0.36926	1	7125	7125		74.517	10.309	1	82102			6695	10331	3415	3443	6848	6848					0.009288185191167031
CKFTLIIVTL	10	Unmodified	_CKFTLIIVTL_					0	0	0			REV__ENST00000467542.5_1_13:20411687-20425669:-|nuORF	REV__ENST00000467542.5_1_13:20411687-20425669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.8507080078125	2	575.848853	1149.68315	3.3106	0.0019064	0.49871	0.00028718	3.8093	0.0021936	575.8491481846485	36.209	0.61476	36.209	36.098	36.713	0					22	12	2	0	0	0	0.2538	1	14061	14061		72.879	10.772	1	1314900	+		6696	19427	3416	3444	6849	6849					0.1142986336735703
CKKPTNADTI	10	Unmodified	_CKKPTNADTI_					0	0	0			REV__nc|ENSG00000148737|Q9NQB0-3|TCF7L2	REV__nc|ENSG00000148737|Q9NQB0-3|TCF7L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7827758789062	2	545.781699	1089.54884	1.0248	0.00055931	1.0583	0.00057758	2.083	0.0011369	545.7823361302493	45.924	0.48077	45.924	45.635	46.116	0					40	30	2	0	0	0	0.536	1	14714	14714		41.427	2.1738	1	132010	+		6697	21061	3417	3445	6850	6850					0.007651778746094351
CKLAQPLSK	9	Unmodified	_CKLAQPLSK_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2862854003906	2	494.28642	986.558287	-0.067111	-3.3172E-05	-0.24467	-0.00012093	-0.31178	-0.00015411	494.2863066132349	19.737	0.17579	19.737	19.626	19.802	0					11	5	3	0	0	0	0.50858	1	5153	5153		31.53	3.6476	1	180340			6698	11304	3418	3446	6851	6851					0.06446990950826148
CKLGVRPPAS	10	Unmodified	_CKLGVRPPAS_					0	0	0		TIMELESS|p.R1065C|1|0.42|ENSG00000111602|chr12:56420604-56420604|G/A|missense_variant	TIMELESS|p.R1065C|1|0.42|ENSG00000111602|chr12:56420604-56420604|G/A|missense_variant	TIMELESS|p.R1065C|1|0.42|ENSG00000111602|chr12:56420604-56420604|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.19769287109375	3	343.195421	1026.56443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.511	1	53.511	53.011	54.011	0								0	0	0	0.4201	1	20597	20597		20.837	0.80668	1				6699	22533	3419	3447	6852	6852					0.05221509182342743
CKLVWLVL	8	Unmodified	_CKLVWLVL_					0	0	0			REV__MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant	REV__MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2998352050781	2	487.298799	972.583045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.93	1	40.93	40.43	41.43	0								0	0	0	1.7419	1	16246	16246		42.474	9.662	1		+		6700	20896	3420	3448	6853	6853					0.09565670824179051
CKMLEIAAILS	11	Unmodified	_CKMLEIAAILS_					0	0	0			REV__nc|ENSG00000145016|Q92622-3|RUBCN	REV__nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.3271484375	2	596.327427	1190.6403	0.12088	7.2086E-05	0.45332	0.00027033	0.5742	0.00034241	596.3276843752383	35.637	0.41804	35.637	35.372	35.79	0					30	11	3	0	0	0	0.33926	1	13320	13320		58.23	3.4536	1	575950	+		6701	15253	3421	3449	6854	6854					0.05260725247603659
CKPFNPVL	8	Unmodified	_CKPFNPVL_					0	0	0		ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.25054931640625	2	459.249306	916.484059	0.072502	3.3297E-05	1.8908	0.00086836	1.9633	0.00090166	459.2503141618648	31.318	0.29209	31.318	31.181	31.473	0					23	12	3	0	0	0	0.64096	1	10019	10019		42.474	1.6963	1	137350			6702	972	3422	3450	6855	6855					0.0224764785930347
CKPWYAGA	8	Unmodified	_CKPWYAGA_					0	0	0		nc|ENSG00000095585|Q8WV28-2|BLNK;ENSG00000095585|ENST00000224337|BLNK;ENST00000485193.1_1_10:97959827-97964307:-|nuORF;nc|ENSG00000095585|Q8WV28-3|BLNK	nc|ENSG00000095585|Q8WV28-2|BLNK	nc|ENSG00000095585|Q8WV28-2|BLNK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.211181640625	2	448.210181	894.405809	2.5552	0.0011453	-0.27507	-0.00012329	2.2801	0.001022	448.210048004928	17.115	0.41705	17.115	16.859	17.276	0					22	8	3	0	0	0	0.41446	1	4866	4866		69.093	69.093	1	1147300			6703	1905	3423	3451	6856	6856					-0.04561784725945017
CKSCGAHFAN	10	Carbamidomethyl (C)	_CKSC(Carbamidomethyl (C))GAHFAN_	C(0.012)KSC(0.988)GAHFAN		C(-19)KSC(19)GAHFAN		0	1	0		nc|ENSG00000092871|Q8WZ73-3|RFFL;nc|ENSG00000092871|Q8WZ73-2|RFFL;ENSG00000092871|ENST00000394597|RFFL	nc|ENSG00000092871|Q8WZ73-3|RFFL	nc|ENSG00000092871|Q8WZ73-3|RFFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.7289428710938	2	547.728943	1093.44333	1.1478	0.00062871	-0.98379	-0.00053885	0.16406	8.9861E-05	547.7279247825164	18.645	0.152	18.645	18.623	18.775	0					8	4	2	0	0	0	0.49411	1	4934	4934		45.972	10.354	2	110830			6704	1879	3424	3452	6857	6857	77				-0.09965061522621
CKSDAPTGDV	10	Unmodified	_CKSDAPTGDV_					0	0	0		GOLPH3|p.L132V|1|0.23|ENSG00000113384|chr5:32135650-32135650|G/C|missense_variant;ENSG00000113384|ENST00000265070|GOLPH3	GOLPH3|p.L132V|1|0.23|ENSG00000113384|chr5:32135650-32135650|G/C|missense_variant	GOLPH3|p.L132V|1|0.23|ENSG00000113384|chr5:32135650-32135650|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7212829589844	2	496.721307	991.42806	0.14341	7.1235E-05	-0.72972	-0.00036247	-0.58631	-0.00029123	496.72125597850385	35.236	0.15695	35.236	35.153	35.31	0					8	5	2	0	0	0	0.63224	1	12540	12540		30.318	0	1	80532			6705	2799	3425	3453	6858	6858					-0.0679964983884247
CKSNWRGGWDW	11	Unmodified	_CKSNWRGGWDW_					0	0	0		nc|ENSG00000183560|A6ND01-2|IZUMO1R;ENSG00000183560|ENST00000687084|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	697.8055419921875	2	697.806571	1393.59859	0.24379	0.00017012	-1.3762	-0.00096032	-1.1324	-0.0007902	697.8057508310586	17.689	0.2622	17.689	17.579	17.841	0					17	7	4	0	0	0	0.44025	1	4260	4260		48.602	3.5793	1	1026000			6706	6968	3426	3454	6859	6859					-0.08246694396711973
CKSNWRGGWDW	11	Unmodified	_CKSNWRGGWDW_					0	0	0		nc|ENSG00000183560|A6ND01-2|IZUMO1R;ENSG00000183560|ENST00000687084|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	697.8060913085938	2	697.806571	1393.59859	-2.1412	-0.0014942	1.055	0.00073621	-1.0862	-0.00075795	697.807448880299	17.934	0.40954	17.934	17.844	18.254	0					27	9	5	0	0	0	0.35352	1	5161	5161		56.632	5.4396	1	6211400			6707	6968	3426	3454	6860	6860					-0.08246694396711973
CKSNWRGGWDW	11	Unmodified	_CKSNWRGGWDW_					0	0	0		nc|ENSG00000183560|A6ND01-2|IZUMO1R;ENSG00000183560|ENST00000687084|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.5391540527344	3	465.540139	1393.59859	-0.17069	-7.9463E-05	-1.6515	-0.00076884	-1.8222	-0.0008483	465.5393942724708	17.757	0.15595	17.757	17.655	17.811	0					8	3	3	0	0	0	0.22894	1	4485	4485		79.07	30.468	1	246030			6708	6968	3426	3454	6861	6861					-0.08246694396711973
CKSNWRGGWDW	11	Unmodified	_CKSNWRGGWDW_					0	0	0		nc|ENSG00000183560|A6ND01-2|IZUMO1R;ENSG00000183560|ENST00000687084|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.5392761230469	3	465.540139	1393.59859	-0.49331	-0.00022966	-1.4606	-0.00067997	-1.9539	-0.00090963	465.5395991793126	17.939	0.40615	17.939	17.784	18.19	0					27	8	5	0	0	0	0.29191	1	5256	5256		72.096	10.331	1	3366400			6709	6968	3426	3454	6862	6862					-0.08246694396711973
CKVRSMQF	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KVRSMQF_	C(1)KVRSMQF		C(44)KVRSMQF		0	1	0			REV__nc|ENSG00000174226|Q8N9S9-2|SNX31	REV__nc|ENSG00000174226|Q8N9S9-2|SNX31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2620239257812	2	528.259879	1054.50521	1.6286	0.00086032	2.6374	0.0013932	4.266	0.0022535	528.2611041654286	36.673	0.21594	36.673	36.562	36.778	0					7	4	2	0	0	0	0.63077	1	14285	14285		44.117	6.9577	1	196990	+		6710	16555	3427	3455	6863	6863	588				-0.019867101034833468
CLAAGCSVIA	10	Unmodified	_CLAAGCSVIA_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2221374511719	2	454.222431	906.430309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.496	1	18.496	17.996	18.996	0								0	0	0	0.20728	1	4611	4611		63.306	5.495	1				6711	2584	3428	3456	6864	6864					-0.026648926347320412
CLAATLLPSL	10	Unmodified	_CLAATLLPSL_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2894592285156	2	501.288628	1000.5627	2.9236	0.0014656	0.83939	0.00042078	3.763	0.0018864	501.2887658297762	47.681	0.28861	47.681	47.511	47.799	0					29	15	3	0	0	0	0.65051	1	18984	18984		10.866	0	1	117770			6712	3062	3429	3457	6865	6865					0.06244455373735036
CLALAWTLL	9	Unmodified	_CLALAWTLL_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2872009277344	2	502.285889	1002.55722	2.926	0.0014697	-0.43662	-0.00021931	2.4894	0.0012504	502.28539568373367	35.763	0.26079	35.763	35.654	35.914	0					12	5	3	0	0	0	0.1115	1	13847	13847		71.378	21.936	1	537620			6713	4202	3430	3458	6866	6866					0.05604776581913029
CLAVHQSYI	9	Unmodified	_CLAVHQSYI_					0	0	0			REV__ENSG00000085840|ENST00000371568|ORC1	REV__ENSG00000085840|ENST00000371568|ORC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2619018554688	2	517.260402	1032.50625	0.027073	1.4004E-05	3.3247	0.0017197	3.3517	0.0017337	517.2619472105562	30.504	0.14976	30.504	30.445	30.595	0					10	5	2	0	0	0	0.2873	1	10035	10035		51.335	3.4199	1	87417	+		6714	13360	3431	3459	6867	6867					-0.008701724629418095
CLCLHVPL	8	Unmodified	_CLCLHVPL_					0	0	0			REV__ENST00000547685.5_1_12:56231631-56233583:-|nuORF	REV__ENST00000547685.5_1_12:56231631-56233583:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2395324707031	2	449.237884	896.461215	3.6009	0.0016177	-2.7951	-0.0012556	0.80589	0.00036204	449.2367559381457	28.97	0.29478	28.97	28.83	29.125	0					19	11	2	0	0	0	0.63381	1	9366	9366		43.626	1.2299	1	126840	+		6715	20179	3432	3460	6868	6868					0.008843054701628716
CLCRDQSVL	9	Unmodified	_CLCRDQSVL_					0	0	0			REV__ENST00000329687.8_1_4:2935791-2936172:-|nuORF	REV__ENST00000329687.8_1_4:2935791-2936172:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7515869140625	2	518.749344	1035.48414	3.3487	0.0017371	0.055577	2.883E-05	3.4043	0.001766	518.7493483363912	19.071	1.5439	19.071	18.784	20.328	0					100	31	6	0	0	0	0.1115	1	5795	5795		76.774	7.9873	1	20356000	+		6716	18374	3433	3461	6869	6869					-0.03218720203017256
CLEKLGNLQ	9	Unmodified	_CLEKLGNLQ_					0	0	0		ENSG00000134061|ENST00000256447|CD180;CD180|p.A649Cfs*3|1|0.26|ENSG00000134061|chr5:67182898-67182899|-/A|frameshift_variant	ENSG00000134061|ENST00000256447|CD180	ENSG00000134061|ENST00000256447|CD180	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.27703857421875	2	509.273509	1016.53247	0.93894	0.00047818	1.2219	0.00062227	2.1608	0.0011004	509.7747154409121	38.644	0.2346	38.644	38.53	38.764	0					21	10	3	0	0	0	0.41113	1	14690	14690		40.778	1.5253	1	163380			6717	424	3434	3462	6870	6870					0.02486096708560126
CLGDPSARYY	10	Unmodified	_CLGDPSARYY_					0	0	0			REV__LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant	REV__LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.7591552734375	2	572.758223	1143.50189	1.0764	0.00061649	-0.098918	-5.6656E-05	0.97744	0.00055983	572.7582172290851	31.201	0.52917	31.201	31.086	31.616	0					52	21	3	0	0	0	0.67098	1	10135	10135		25.574	2.5316	1	122350	+		6718	14594	3435	3463	6871	6871					-0.06411681676490844
CLGQKSCPRAH	11	Unmodified	_CLGQKSCPRAH_					0	0	0		ENST00000508848.5_1_7:102181988-102207051:-|nuORF	ENST00000508848.5_1_7:102181988-102207051:-|nuORF	ENST00000508848.5_1_7:102181988-102207051:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.291748046875	2	600.292242	1198.56993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.79	1	38.79	38.29	39.29	0								0	0	0	0.45674	1	13865	13865		23.523	3.5259	1				6719	10215	3436	3464	6872	6872					-0.0214113529750648
CLHCKHPK	8	Unmodified	_CLHCKHPK_					0	0	0			REV__ENST00000467811.5_1_20:50704880-50715019:-|nuORF	REV__ENST00000467811.5_1_20:50704880-50715019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.24383544921875	2	483.244032	964.473511	-1.2819	-0.00061947	0.90928	0.0004394	-0.37263	-0.00018007	483.2445013049257	15.607	0.20239	15.607	15.56	15.762	0					12	8	2	0	0	0	0.4723	1	3597	3597		62.978	62.978	1	197820	+		6720	19432	3437	3465	6873	6873					-0.010146580667765193
CLHHLSSTM	9	Unmodified	_CLHHLSSTM_					0	0	0			REV__ENSG00000120498|ENST00000374333|TEX11	REV__ENSG00000120498|ENST00000374333|TEX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7378540039062	2	514.736237	1027.45792	3.2226	0.0016588	0.10009	5.1518E-05	3.3227	0.0017103	514.7361315808517	33.884	0.29235	33.884	33.793	34.085	0					12	6	3	0	0	0	0.30268	1	12941	12941		50.025	0	1	726930	+		6721	14283	3438	3466	6874	6874					-0.05470989374498458
CLIENKAGQD	10	Unmodified	_CLIENKAGQD_					0	0	0		TTN|p.E8248K|1|0.4|ENSG00000155657|chr2:178715721-178715721|C/T|missense_variant	TTN|p.E8248K|1|0.4|ENSG00000155657|chr2:178715721-178715721|C/T|missense_variant	TTN|p.E8248K|1|0.4|ENSG00000155657|chr2:178715721-178715721|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7634887695312	2	545.763506	1089.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.056	1	27.056	26.556	27.556	0								0	0	0	0.37129	1	8297	8297		39.253	4.1008	1				6722	23078	3439	3467	6875	6875					-0.02871699022057328
CLIFLRVEGQ	10	Unmodified	_CLIFLRVEGQ_					0	0	0			REV__ENST00000525598.1_1_11:118984241-118984860:+|nuORF	REV__ENST00000525598.1_1_11:118984241-118984860:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.21673583984375	3	393.218115	1176.63251	-0.66512	-0.00026154	-3.1739	-0.001248	-3.839	-0.0015096	393.2169521517591	17.986	0.16031	17.986	17.931	18.092	0					10	3	4	0	0	0	0.536	1	5308	5308		41.427	1.3684	1	540340	+		6723	19989	3440	3468	6876	6876					0.0512633404234748
CLKETCEK	8	Unmodified	_CLKETCEK_					0	0	0		nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1	nc|ENSG00000149554|O14757-2|CHEK1	nc|ENSG00000149554|O14757-2|CHEK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2504577636719	2	477.225171	952.435788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.072	1	18.072	17.572	18.572	0								0	0	0	1.7419	1	4643	4643		63.306	2.3343	1				6724	4894	3441	3469	6877	6877					-0.04233213842917394
CLKSEVKMQ	9	Oxidation (M)	_CLKSEVKM(Oxidation (M))Q_		CLKSEVKM(1)Q		CLKSEVKM(85)Q	0	0	1		nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2752075195312	2	541.272652	1080.53075	3.5202	0.0019054	1.1961	0.00064742	4.7163	0.0025528	541.2733291111554	30.171	0.4959	30.171	30.065	30.561	0					18	10	2	0	0	0	0.0792	1	11148	11148		84.916	8.1414	1	1616800			6725	4108	3442	3470	6878	6878		169			-0.00629280371731511
CLLATWRL	8	Unmodified	_CLLATWRL_					0	0	0			REV__ENSG00000197496|ENST00000359271|SLC2A10	REV__ENSG00000197496|ENST00000359271|SLC2A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2770080566406	2	488.275855	974.537157	2.589	0.0012641	-0.49262	-0.00024054	2.0964	0.0010236	488.27564954280615	39.726	0.45652	39.726	39.592	40.048	0					26	10	4	0	0	0	0.28158	1	15707	15707		88.643	17.265	1	3243900	+		6726	17339	3443	3471	6879	6879					0.04887025641960463
CLLGWLGAEL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LLGWLGAEL_	C(1)LLGWLGAEL		C(56)LLGWLGAEL		0	1	0		L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|204|2|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|204|2|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|204|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.2979125976562	2	566.296985	1130.57942	-0.33078	-0.00018732	3.1403	0.0017784	2.8095	0.001591	566.2982289351938	41.541	0.12327	41.541	41.486	41.61	0					12	7	2	0	0	0	0.40673	1	13797	13797		55.504	6.9027	1	59743			6727	11296	3444	3472	6880	6880	450				0.019349562596744363
CLLNCRYK	8	Unmodified	_CLLNCRYK_					0	0	0		nc|ENSG00000145949|Q86YV6-2|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.75140380859375	2	506.756972	1011.49939	-0.67143	-0.00034025	2.5971	0.0013161	1.9256	0.00097582	506.7584514470074	27.99	0.22896	27.99	27.877	28.106	0					19	8	3	0	0	0	0.59411	1	8948	8948		50.025	2.1089	1	337240			6728	11571	3445	3473	6881	6881					-0.005898086151546522
CLLPSQDLAN	10	Unmodified	_CLLPSQDLAN_					0	0	0		ENST00000604367.1_1_3:46964817-46965171:-|nuORF;ENST00000488069.5_1_3:46964817-47018222:-|nuORF	ENST00000604367.1_1_3:46964817-46965171:-|nuORF	ENST00000604367.1_1_3:46964817-46965171:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2695922851562	2	537.268424	1072.5223	1.9755	0.0010614	-0.46264	-0.00024856	1.5129	0.00081282	537.2682076689513	38.975	2.6514	38.975	38.111	40.762	0					186	58	4	0	0	0	0.67098	1	16002	16002		25.574	0	1	2299200			6729	10042	3446	3474	6882	6882					-0.011065110167010062
CLLQQMML	8	Unmodified	_CLLQQMML_					0	0	0			REV__ENST00000488016.1_1_3:110831041-110831131:+|nuORF	REV__ENST00000488016.1_1_3:110831041-110831131:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2420959472656	2	490.242309	978.470065	0.81016	0.00039717	-1.0763	-0.00052763	-0.26611	-0.00013046	490.2414084674199	30.81	0.14658	30.81	30.742	30.889	0					6	3	2	0	0	0	0.6282	1	11154	11154		44.531	0.90502	1	122830	+		6730	19685	3447	3475	6883	6883					-0.0200308895565513
CLLSAAVQFV	10	Unmodified	_CLLSAAVQFV_					0	0	0			REV__ENST00000392475.2_1_3:187003724-187009559:-|nuORF	REV__ENST00000392475.2_1_3:187003724-187009559:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7835083007812	2	525.786253	1049.55795	-1.2346	-0.00064912	-3.8628	-0.002031	-5.0974	-0.0026801	525.783928798413	34.887	0.38276	34.887	34.673	35.055	0					17	13	2	0	0	0	0.61187	1	12388	12388		32.812	2.3088	1	63726	+		6731	18826	3448	3476	6884	6884					0.03515571230968817
CLLSTAPRAA	10	Unmodified	_CLLSTAPRAA_					0	0	0			REV__ENST00000584960.1_1_18:21033283-21043044:+|nuORF	REV__ENST00000584960.1_1_18:21033283-21043044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.8517150878906	3	334.851543	1001.5328	-0.70261	-0.00023527	0.52627	0.00017622	-0.17634	-5.9047E-05	334.8518793306179	21.8	0.12227	21.8	21.73	21.852	0					5	3	2	0	0	0	0.69166	1	6314	6314		28.081	11.608	1	48000	+		6732	20453	3449	3477	6885	6885					0.0320951642838736
CLLVGNGLF	9	Unmodified	_CLLVGNGLF_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2554626464844	2	468.254588	934.494624	0.63676	0.00029817	1.1012	0.00051564	1.738	0.00081381	468.2550322455493	28.373	0.20726	28.373	28.275	28.482	0					11	4	3	0	0	0	0.41354	1	10378	10378		40.573	0	1	1123800	+		6733	13064	3450	3478	6886	6886					0.024756305137316303
CLLVWAQL	8	Unmodified	_CLLVWAQL_					0	0	0		ENST00000521792.2_1_8:43125532-43126024:-|nuORF	ENST00000521792.2_1_8:43125532-43126024:-|nuORF	ENST00000521792.2_1_8:43125532-43126024:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2654724121094	2	473.264956	944.515359	0.59645	0.00028228	-1.1069	-0.00052387	-0.51048	-0.00024159	473.26428710039414	33.687	0.32773	33.687	33.479	33.807	0					13	8	2	0	0	0	0.27463	1	12919	12919		90.939	14.165	1	635950			6734	10320	3451	3479	6887	6887					0.04088220893379457
CLMILYRL	8	Unmodified	_CLMILYRL_					0	0	0		ENST00000551219.5_1_12:71092119-71148195:-|nuORF;ENST00000548220.1_1_12:71054984-71148538:-|nuORF;nc|ENSG00000153233|Q15256-4|PTPRR;PTPRR|p.N498Mfs*25|1|0.47|ENSG00000153233|chr12:70684131-70684131|T/-|frameshift_variant;nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR	ENST00000551219.5_1_12:71092119-71148195:-|nuORF	ENST00000551219.5_1_12:71092119-71148195:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2874145507812	2	512.787741	1023.56093	0.4977	0.00025521	-1.4553	-0.00074628	-0.95764	-0.00049106	512.7873415873429	37.768	0.58595	37.768	37.371	37.957	0					55	28	3	0	0	0	0.72892	1	13412	13412		29.842	1.5873	1	387740			6735	10623	3452	3480	6888	6888					0.05009123084130351
CLNIRLAVK	9	Unmodified	_CLNIRLAVK_					0	0	0		ENST00000581120.1_1_17:61678442-61683801:+|nuORF;ENSG00000136463|ENST00000258975|TACO1	ENST00000581120.1_1_17:61678442-61683801:+|nuORF	ENST00000581120.1_1_17:61678442-61683801:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3161010742188	2	515.315512	1028.61647	1.501	0.00077348	-1.4997	-0.00077283	0.0012669	6.5284E-07	515.3148304409166	27.503	0.51934	27.503	27.39	27.91	0					25	10	3	0	0	0	0.14603	1	9909	9909		68.787	4.5796	1	5953600			6736	4082	3453	3481	6889	6889					0.10330672596069235
CLNRTRQM	8	Unmodified	_CLNRTRQM_					0	0	0		ENST00000527570.1_1_1:112281863-112282013:-|nuORF	ENST00000527570.1_1_1:112281863-112282013:-|nuORF	ENST00000527570.1_1_1:112281863-112282013:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2540588378906	2	511.255128	1020.4957	-1.7604	-0.00090002	0.87302	0.00044634	-0.88739	-0.00045368	511.25562117544456	44.057	0.12224	44.057	43.981	44.103	0					12	7	2	0	0	0	0.61938	1	15180	15180		45.952	0	1	40133			6737	10394	3454	3482	6890	6890					-0.01372478389009757
CLPCLGHL	8	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))LPC(Carbamidomethyl (C))LGHL_	C(1)LPC(1)LGHL		C(44)LPC(44)LGHL		0	2	0		ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2362365722656	2	485.235873	968.457192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.889	1	31.889	31.389	32.389	0								0	0	0	1.7419	1	11030	11030		43.626	10.133	1				6738	9341	3455	3483	6891	6891	385;386				-0.02829784023549564
CLPLLLHW	8	Unmodified	_CLPLLLHW_					0	0	0			REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.8538818359375	3	332.189608	993.546994	0.54172	0.00017995	1.6045	0.00053301	2.1463	0.00071297	332.1900957432433	23.238	0.16703	23.238	23.128	23.295	0					5	3	2	0	0	0	0.75243	1	7967	7967		26.796	7.6926	1	345460	+		6739	17208	3456	3484	6892	6892					0.049962136473368446
CLPRWLEA	8	Unmodified	_CLPRWLEA_					0	0	0		ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2587585449219	2	494.257662	986.500772	2.7997	0.0013838	-0.43029	-0.00021268	2.3694	0.0011711	494.2574280075834	22.678	0.71564	22.678	22.353	23.069	0					42	14	4	0	0	0	0.61938	1	7537	7537		45.952	45.952	1	4320600			6740	7180	3457	3485	6893	6893					0.006981487452435431
CLQCRKPTI	9	Unmodified	_CLQCRKPTI_					0	0	0		ENST00000504719.6_1_8:128806950-128867457:+|nuORF;ENST00000524165.5_1_8:128808194-128867457:+|nuORF	ENST00000504719.6_1_8:128806950-128867457:+|nuORF	ENST00000504719.6_1_8:128806950-128867457:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2832641601562	2	531.283354	1060.55216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.134	1	17.134	16.634	17.634	0								0	0	0	0.073265	1	5035	5035		79.451	1.1872	1				6741	10175	3458	3486	6894	6894					0.024301494476731023
CLQCSQAEVKD	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))LQC(Carbamidomethyl (C))SQAEVKD_	C(1)LQC(1)SQAEVKD		C(55)LQC(55)SQAEVKD		0	2	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.5322265625	3	446.532322	1336.57514	0.60531	0.00027029	-0.48624	-0.00021712	0.11907	5.3171E-05	446.5320045532003	16.877	0.17117	16.877	16.82	16.991	0					12	4	4	0	0	0	0.36734	1	4667	4667		55.084	15.211	1	372140	+		6742	15137	3459	3487	6895	6895	562;563				-0.07968921016185959
CLQRPGAL	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LQRPGAL_	C(1)LQRPGAL		C(78)LQRPGAL		0	1	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7474060058594	2	457.747462	913.480371	0.77449	0.00035452	-1.3791	-0.00063126	-0.60458	-0.00027674	457.7469515647677	28.322	0.4106	28.322	28.165	28.575	0					18	10	2	0	0	0	0.34071	1	10014	10014		77.944	6.5659	1	321170	+		6743	19317	3460	3488	6896	6896	690				0.020169780854416786
CLRETRGQK	9	Unmodified	_CLRETRGQK_					0	0	0			REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7941284179688	2	545.792932	1089.57131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.482	1	13.482	12.982	13.982	0								0	0	0	0.33579	1	2715	2715		14.865	0	1		+		6744	17005	3461	3489	6897	6897					0.030108220629017524
CLRPHISL	8	Unmodified	_CLRPHISL_					0	0	0			REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7679443359375	2	469.765655	937.516756	0.53116	0.00024952	0.1899	8.921E-05	0.72107	0.00033873	469.76582210052686	37.648	0.30247	37.648	37.55	37.852	0					11	6	2	0	0	0	0.54629	1	14748	14748		55.504	5.4797	1	320270	+		6745	20395	3462	3490	6898	6898					0.04549854982155921
CLRPSSLSTL	10	Unmodified	_CLRPSSLSTL_					0	0	0		ENSG00000175449|ENST00000380005|RFESD	ENSG00000175449|ENST00000380005|RFESD	ENSG00000175449|ENST00000380005|RFESD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7940063476562	2	538.792066	1075.56958	0.24016	0.0001294	3.6155	0.001948	3.8557	0.0020774	538.7940285392862	46.541	0.12062	46.541	46.488	46.609	0					10	7	2	0	0	0	0.61187	1	17180	17180		32.812	2.4947	1	63189			6746	6557	3463	3491	6899	6899					0.03481768254300732
CLRQLAQR	8	Unmodified	_CLRQLAQR_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7745056152344	2	494.27946	986.544368	-0.45166	-0.00022325	-0.95864	-0.00047384	-1.4103	-0.00069708	494.2790961014156	35.974	0.7264	35.974	35.558	36.285	0					44	19	3	0	0	0	0.59411	1	13384	13384		50.025	50.025	1	2333300			6747	1023	3464	3492	6900	6900					0.0505575824238349
CLRVMVGVI	9	Unmodified	_CLRVMVGVI_					0	0	0		ENSG00000153310|ENST00000694912|CYRIB;nc|ENSG00000153310|Q9NUQ9-2|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2854919433594	2	495.285366	988.556178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.443	1	40.443	39.943	40.943	0								0	0	0	0.16876	1	14368	14368		55.504	17.693	1				6748	5050	3465	3493	6901	6901					0.06144238941385538
CLSKQPMAL	9	Unmodified	_CLSKQPMAL_					0	0	0		ENST00000254977.7_1_20:11903866-11903926:+|nuORF	ENST00000254977.7_1_20:11903866-11903926:+|nuORF	ENST00000254977.7_1_20:11903866-11903926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7586669921875	2	495.759181	989.503808	0.11304	5.6038E-05	-3.2733	-0.0016228	-3.1603	-0.0015667	495.75806174635136	25.435	0.25216	25.435	25.296	25.548	0					13	6	3	0	0	0	0.25716	1	8097	8097		54.776	0.053964	1	223480			6749	8256	3466	3494	6902	6902					0.008636558077455447
CLSLVVHF	8	Unmodified	_CLSLVVHF_					0	0	0			REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|35|3|sense	REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|35|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.25018310546875	2	459.249306	916.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.786	1	37.786	37.286	38.286	0								0	0	0	1.7419	1	14348	14348		46.766	2.3892	1		+		6750	21639	3467	3495	6903	6903					0.0224764785930347
CLTQMSLFA	9	Unmodified	_CLTQMSLFA_					0	0	0		ENST00000463158.1_1_3:125431174-125431342:+|nuORF	ENST00000463158.1_1_3:125431174-125431342:+|nuORF	ENST00000463158.1_1_3:125431174-125431342:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.4983825683594	3	338.498001	1012.47217	-0.6933	-0.00023468	1.6041	0.000543	0.91084	0.00030832	338.4984401312769	22.172	0.13516	22.172	22.071	22.206	0					9	4	3	0	0	0	0.48389	1	6479	6479		34.173	3.8548	1	177450			6751	9756	3468	3496	6904	6904					-0.03356336946205829
CLTTYLQQ	8	Unmodified	_CLTTYLQQ_					0	0	0			REV__nc|ENSG00000156026|Q8NE86-3|MCU	REV__nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.23895263671875	2	485.239135	968.463718	-0.5703	-0.00027673	0.26818	0.00013013	-0.30212	-0.0001466	485.2392234582531	38.114	0.60599	38.114	37.904	38.51	0					21	13	2	0	0	0	0.7126	1	14940	14940		31.955	5.2619	1	102960	+		6752	15618	3469	3497	6905	6905					-0.02177567591161278
CLVAMVVKL	9	Unmodified	_CLVAMVVKL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.I1897V|1|0.29|ENSG00000119285|chr1:236555616-236555616|T/C|missense_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.28900146484375	2	488.290117	974.56568	-0.38247	-0.00018675	-1.8712	-0.00091368	-2.2536	-0.0011004	488.2888032671704	41.325	0.19098	41.325	41.241	41.432	0					12	9	2	0	0	0	0.32741	1	15698	15698		47.916	1.9434	1	74579			6753	3105	3470	3498	6906	6906					0.0773800722689657
CLVAMVVKL	9	Unmodified	_CLVAMVVKL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.I1897V|1|0.29|ENSG00000119285|chr1:236555616-236555616|T/C|missense_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2886047363281	2	488.290117	974.56568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.284	1	41.284	40.784	41.784	0								0	0	0	0.20652	1	16235	16235		50.025	3.2581	1				6754	3105	3470	3498	6907	6907					0.0773800722689657
CLVELLGSAL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LVELLGSAL_	C(1)LVELLGSAL		C(59)LVELLGSAL		0	1	0		AQP8|p.M122Cfs*10|2|0.3|ENSG00000103375|chr16:25221554-25221554|G/-|frameshift_variant;ENSG00000103375|ENST00000219660|AQP8	AQP8|p.M122Cfs*10|2|0.3|ENSG00000103375|chr16:25221554-25221554|G/-|frameshift_variant	AQP8|p.M122Cfs*10|2|0.3|ENSG00000103375|chr16:25221554-25221554|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7940063476562	2	537.796817	1073.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.121	1	37.121	36.621	37.621	0								0	0	0	0.24422	1	14050	14050		58.782	9.3404	1				6755	191	3471	3499	6908	6908	10				0.045235365398411886
CLVFTVTISV	10	Unmodified	_CLVFTVTISV_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.3016357421875	2	541.301736	1080.58892	-0.14275	-7.7272E-05	-0.12717	-6.8836E-05	-0.26992	-0.00014611	541.3017948016293	21.646	0.19288	21.646	21.588	21.781	0					9	5	3	0	0	0	0.73697	1	6259	6259		15.642	1.8665	1	254600	+		6756	15058	3472	3500	6909	6909					0.05184724545210884
CLVSYHVNM	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LVSYHVNM_	C(1)LVSYHVNM		C(74)LVSYHVNM		0	1	0		ENST00000519324.1_1_8:99264547-99306317:-|nuORF	ENST00000519324.1_1_8:99264547-99306317:-|nuORF	ENST00000519324.1_1_8:99264547-99306317:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7568969726562	2	561.757169	1121.49979	1.8393	0.0010332	-1.7999	-0.0010111	0.039412	2.214E-05	561.7562604004113	35.002	0.50917	35.002	34.924	35.433	0					31	14	4	0	0	0	0.12239	1	13536	13536		74.255	19.479	1	969760			6757	10284	3473	3501	6910	6910	414				-0.05610433685978933
CLVTEDEVKK	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LVTEDEVKK_	C(1)LVTEDEVKK		C(62)LVTEDEVKK		0	1	0			REV__nc|ENSG00000108799|Q92800-3|EZH1	REV__nc|ENSG00000108799|Q92800-3|EZH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	610.8134155273438	2	610.813196	1219.61184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.473	1	27.473	26.973	27.973	0								0	0	0	0.21707	1	8757	8757		62.107	18.457	1		+		6758	20969	3474	3502	6911	6911	723				0.010816988719852816
CLVYQGAQRPD	11	Unmodified	_CLVYQGAQRPD_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-1|RADIL	REV__nc|ENSG00000157927|Q96JH8-1|RADIL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	625.3016357421875	2	625.303329	1248.59211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.018	1	34.018	33.518	34.518	0								0	0	0	0.45144	1	13073	13073		25.574	1.0549	1		+		6759	15672	3475	3503	6912	6912					-0.02224632348088562
CLWALNLAR	9	Unmodified	_CLWALNLAR_					0	0	0		nc|ENSG00000139445|Q96NZ1-3|FOXN4;ENSG00000139445|ENST00000299162|FOXN4	nc|ENSG00000139445|Q96NZ1-3|FOXN4	nc|ENSG00000139445|Q96NZ1-3|FOXN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.86468505859375	3	353.863783	1058.56952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.358	1	16.358	15.858	16.858	0								0	0	0	0.30835	1	3906	3906		40.778	10.209	1				6760	4331	3476	3504	6913	6913					0.042578130449328455
CLWRGGPAL	9	Unmodified	_CLWRGGPAL_					0	0	0		ENST00000490681.1_1_3:52566230-52566458:-|nuORF	ENST00000490681.1_1_3:52566230-52566458:-|nuORF	ENST00000490681.1_1_3:52566230-52566458:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.75885009765625	2	486.75783	971.501106	2.5363	0.0012346	-0.049384	-2.4038E-05	2.487	0.0012105	486.7578936641677	29.671	0.41451	29.671	29.515	29.93	0					22	8	4	0	0	0	0.21116	1	10885	10885		60.294	7.3573	1	1015500			6761	10064	3477	3505	6914	6914					0.014215684651162519
CLWSSVQL	8	Unmodified	_CLWSSVQL_					0	0	0			REV__CDH1|p.P126Rfs*89|3|0.3|ENSG00000039068|chr16:68801878-68801878|C/-|frameshift_variant	REV__CDH1|p.P126Rfs*89|3|0.3|ENSG00000039068|chr16:68801878-68801878|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2374572753906	2	468.236396	934.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.799	1	19.799	19.299	20.299	0								0	0	0	1.7419	1	5448	5448		57.811	8.3697	1		+		6762	12392	3478	3506	6915	6915					-0.011612463829806075
CMERGPAL	8	Unmodified	_CMERGPAL_					0	0	0		ENST00000504473.5_1_16:89753600-89759778:+|nuORF	ENST00000504473.5_1_16:89753600-89759778:+|nuORF	ENST00000504473.5_1_16:89753600-89759778:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.7051086425781	2	438.706948	875.399343	-3.1051	-0.0013622	-1.5911	-0.00069803	-4.6962	-0.0020602	438.7065989177804	30.378	0.14973	30.378	30.318	30.468	0					7	3	3	0	0	0	0.5676	1	10350	10350		53.351	8.9743	1	110800			6763	10173	3479	3507	6916	6916					-0.04334045948962739
CMEVLEALY	9	Unmodified	_CMEVLEALY_					0	0	0		ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.2496948242188	2	535.748479	1069.4824	0.63264	0.00033894	0.53655	0.00028745	1.1692	0.00062639	535.7486750951558	23.257	0.27144	23.257	23.1	23.372	0					19	7	3	0	0	0	0.50461	1	6658	6658		31.955	0.42505	1	527480			6764	5661	3480	3508	6917	6917					-0.04955774011614267
CMGLLTEAAF	10	Unmodified	_CMGLLTEAAF_					0	0	0			REV__ENST00000519749.1_1_5:156668627-156672902:+|nuORF	REV__ENST00000519749.1_1_5:156668627-156672902:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.2485961914062	2	528.248646	1054.48274	0.21918	0.00011578	-0.49956	-0.00026389	-0.28038	-0.00014811	528.2480979740741	29.999	0.18158	29.999	29.898	30.08	0					10	6	2	0	0	0	0.4943	1	9816	9816		45.952	3.4775	1	56900	+		6765	14029	3481	3509	6918	6918					-0.042323542917984014
CMHLVAALI	9	Unmodified	_CMHLVAALI_					0	0	0			REV__OR2T33|p.R227C|1|0.29|ENSG00000177212|chr1:248273136-248273136|G/A|missense_variant	REV__OR2T33|p.R227C|1|0.29|ENSG00000177212|chr1:248273136-248273136|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7637023925781	2	485.764266	969.513979	0.35487	0.00017238	-0.86634	-0.00042084	-0.51147	-0.00024846	485.7638360340572	37.406	0.24961	37.406	37.329	37.579	0					16	12	2	0	0	0	0.43174	1	13387	13387		39.021	1.8624	1	75412	+		6766	21319	3482	3510	6919	6919					0.028002635329698933
CMKNVLCHQ	9	Unmodified	_CMKNVLCHQ_					0	0	0			REV__ENSG00000180611|ENST00000392452|MB21D2	REV__ENSG00000180611|ENST00000392452|MB21D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2478637695312	2	538.245914	1074.47728	3.374	0.0018161	-0.38733	-0.00020848	2.9867	0.0016076	538.2458788810791	31.893	0.31618	31.893	31.735	32.051	0					17	6	4	0	0	0	0.27249	1	11985	11985		55.504	9.5523	1	907950	+		6767	16815	3483	3511	6920	6920					-0.0569835635524214
CMKRYLYQ	8	Unmodified	_CMKRYLYQ_					0	0	0			REV__ENST00000605755.5_1_1:85135569-85156059:-|nuORF	REV__ENST00000605755.5_1_1:85135569-85156059:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7719116210938	2	552.77008	1103.52561	3.6571	0.0020215	-2.3515	-0.0012998	1.3056	0.00072167	552.7681834758251	40.15	1.6398	40.15	39.673	41.313	0					53	35	3	0	0	0	0.59773	1	15917	15917		47.916	0.25827	1	398900	+		6768	20613	3484	3512	6921	6921					-0.022015394436948554
CMKYLYTL	8	Unmodified	_CMKYLYTL_					0	0	0		ENST00000268607.9_1_16:87437976-87438060:+|nuORF	ENST00000268607.9_1_16:87437976-87438060:+|nuORF	ENST00000268607.9_1_16:87437976-87438060:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7549438476562	2	517.756107	1033.49766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.566	1	19.566	19.066	20.066	0								0	0	0	1.7419	1	5338	5338		33.516	0.76505	1				6769	8372	3485	3513	6922	6922					-0.017748624237810873
CMMGGPMVHG	10	Oxidation (M)	_CMM(Oxidation (M))GGPMVHG_		CM(0.002)M(0.998)GGPMVHG		CM(-28)M(28)GGPM(-42)VHG	0	0	1			REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant	REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2000122070312	2	518.197576	1034.3806	0.10313	5.3443E-05	3.2963	0.0017081	3.3995	0.0017616	518.1994084491854	40.779	0.093796	40.779	40.726	40.82	0					13	5	3	0	0	0	0.41345	1	13634	13634		54.765	12.29	3	110160	+		6770	12706	3486	3514	6923	6923		486			-0.1352166690667218
CMMGGPMVHG	10	Oxidation (M)	_CMM(Oxidation (M))GGPMVHG_		CM(0.001)M(0.999)GGPMVHG		CM(-31)M(31)GGPM(-53)VHG	0	0	1			REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant	REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.1993408203125	2	518.197576	1034.3806	1.5699	0.00081352	1.1037	0.00057191	2.6736	0.0013854	518.1983267134749	40.979	0.36786	40.979	40.804	41.172	0					31	10	4	0	0	0	0.3122	1	16122	16122		65.897	14.562	3	356930	+		6771	12706	3486	3514	6924	6924		486			-0.1352166690667218
CMQEASPGSFQ	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))MQEASPGSFQ_	C(1)MQEASPGSFQ		C(41)MQEASPGSFQ		0	1	0			REV__ENST00000608543.1_1_1:155932320-155932747:-|nuORF	REV__ENST00000608543.1_1_1:155932320-155932747:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	621.251953125	2	621.249905	1240.48526	3.1142	0.0019347	-0.20364	-0.00012651	2.9105	0.0018082	621.2500594344422	35.407	0.57156	35.407	35.245	35.817	0					25	11	4	0	0	0	0.5473	1	13677	13677		40.778	6.6056	1	1102000	+		6772	14149	3487	3515	6925	6925	530				-0.1253655062478174
CNAEDSNYQ	9	Unmodified	_CNAEDSNYQ_					0	0	0			REV__LRP1|p.D3401Y|1|0.24|ENSG00000123384|chr12:57200791-57200791|G/T|missense_variant	REV__LRP1|p.D3401Y|1|0.24|ENSG00000123384|chr12:57200791-57200791|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.1926879882812	2	522.190371	1042.36619	1.614	0.00084284	1.8023	0.00094113	3.4163	0.001784	522.1919591346619	17.263	0.41703	17.263	16.94	17.357	0					24	10	5	0	0	0	0.22837	1	4832	4832		34.173	0	1	1511600	+		6773	20843	3488	3516	6926	6926					-0.15330001257962067
CNDFYIQFK	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))NDFYIQFK_	C(1)NDFYIQFK		C(50)NDFYIQFK		0	1	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.1898498535156	3	412.190225	1233.54884	-0.077382	-3.1896E-05	-0.92926	-0.00038303	-1.0066	-0.00041493	412.18991968501444	24.774	0.13815	24.774	24.689	24.827	0					10	3	4	0	0	0	0.30841	1	7769	7769		49.536	8.456	1	181630	+		6774	13905	3489	3517	6927	6927	527				-0.05858822125378538
CNIINEVISKG	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))NIINEVISKG_	C(1)NIINEVISKG		C(51)NIINEVISKG		0	1	0			REV__ENSG00000174130|ENST00000508254|TLR6	REV__ENSG00000174130|ENST00000508254|TLR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.22015380859375	3	416.220184	1245.63872	0.97701	0.00040665	-0.87869	-0.00036573	0.098316	4.0921E-05	416.219868205084	36.931	0.26375	36.931	36.831	37.095	0					20	8	3	0	0	0	0.41029	1	14395	14395		50.791	9.7112	1	259160	+		6775	16548	3490	3518	6928	6928	587				0.025728074831931735
CNKLFLPT	8	Unmodified	_CNKLFLPT_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2551574707031	2	468.254588	934.494624	-0.70778	-0.00033142	2.2486	0.0010529	1.5408	0.00072147	468.2555291153523	28.151	0.18411	28.151	28.069	28.253	0					6	4	2	0	0	0	0.60719	1	9297	9297		47.916	3.7988	1	197770	+		6776	17417	3491	3519	6929	6929					0.024756305137202617
CNLLIKRAA	9	Unmodified	_CNLLIKRAA_					0	0	0			REV__ENSG00000236699|ENST00000420470|ARHGEF38	REV__ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29693603515625	2	501.299862	1000.58517	2.9235	0.0014655	-0.2661	-0.0001334	2.6574	0.0013321	501.299521786364	41.472	0.45845	41.472	41.256	41.715	0					24	11	3	0	0	0	0.13519	1	16582	16582		71.296	7.7619	1	399270	+		6777	17666	3492	3520	6930	6930					0.08490099562004616
CNSRWVGVL	9	Unmodified	_CNSRWVGVL_					0	0	0			REV__ENST00000593110.5_1_17:57963566-57970134:-|nuORF	REV__ENST00000593110.5_1_17:57963566-57970134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2675170898438	2	517.266019	1032.51748	3.3175	0.001716	-0.18646	-9.6447E-05	3.131	0.0016196	517.2658527482167	21.911	0.26616	21.911	21.704	21.97	0					9	5	3	0	0	0	0.20551	1	7219	7219		60.972	7.6205	1	2233700	+		6778	20545	3493	3521	6931	6931					0.0025264963119298045
CNSTTSSRK	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))NSTTSSRK_	C(1)NSTTSSRK		C(57)NSTTSSRK		0	1	0		ENST00000554272.5_1_12:25215794-25219317:+|nuORF;ENST00000549437.5_1_12:25215794-25219317:+|nuORF	ENST00000554272.5_1_12:25215794-25219317:+|nuORF	ENST00000554272.5_1_12:25215794-25219317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7452392578125	2	520.743105	1039.47166	3.3782	0.0017592	0.58737	0.00030587	3.9656	0.002065	520.7435105960506	22.763	0.26749	22.763	22.655	22.922	0					15	5	4	0	0	0	0.24095	1	7630	7630		56.721	56.721	1	1424700			6779	10608	3494	3522	6932	6932	432				-0.04650040341698514
CNWGAFPVF	9	Unmodified	_CNWGAFPVF_					0	0	0			REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7384033203125	2	520.736563	1039.45857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.481	1	32.481	31.981	32.981	0								0	0	0	0.27166	1	10839	10839		40.573	1.7665	1		+		6780	19042	3495	3523	6933	6933					-0.059578266631206134
CNYFIVGL	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))NYFIVGL_	C(1)NYFIVGL		C(47)NYFIVGL		0	1	0			REV__nc|ENSG00000180287|Q8N7P1-3|PLD5	REV__nc|ENSG00000180287|Q8N7P1-3|PLD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2423400878906	2	493.244221	984.473888	-2.5834	-0.0012743	-1.4873	-0.0007336	-4.0707	-0.0020078	493.24353620006764	36.397	0.32907	36.397	36.268	36.597	0					26	15	3	0	0	0	0.61433	1	13021	13021		46.766	46.766	1	277860	+		6781	16804	3496	3524	6934	6934	595				-0.01896959865905501
CPCGWGPLCL	10	Unmodified	_CPCGWGPLCL_					0	0	0		ENST00000525441.5_1_11:47279523-47282818:+|nuORF;ENST00000441012.6_1_11:47279523-47282064:+|nuORF	ENST00000525441.5_1_11:47279523-47282818:+|nuORF	ENST00000525441.5_1_11:47279523-47282818:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7247314453125	2	524.724284	1047.43401	1.0039	0.00052675	-1.0462	-0.00054895	-0.04232	-2.2206E-05	524.7236932849863	32.514	1.7522	32.514	30.949	32.701	0					63	39	2	0	0	0	0.661	1	12271	12271		26.796	2.5934	1	289670			6782	9574	3497	3525	6935	6935					-0.08780546132538802
CPCTEEQQMGV	11	Unmodified	_CPCTEEQQMGV_					0	0	0		ENST00000565143.1_1_15:72493853-72494174:-|nuORF	ENST00000565143.1_1_15:72493853-72494174:-|nuORF	ENST00000565143.1_1_15:72493853-72494174:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	613.2401733398438	2	612.738316	1223.46208	1.2792	0.00078382	-1.5369	-0.00094173	-0.25771	-0.00015791	613.2390531148184	45.538	0.15982	45.538	45.444	45.604	0					12	5	3	0	0	0	0.65907	1	18241	18241		31.53	3.6476	1	77906			6783	10747	3498	3526	6936	6936					-0.14071312733767627
CPEVFPLLQ	9	Unmodified	_CPEVFPLLQ_					0	0	0		ENST00000489245.5_1_3:183211997-183273441:-|nuORF;ENSG00000172578|ENST00000341319|KLHL6	ENST00000489245.5_1_3:183211997-183273441:-|nuORF	ENST00000489245.5_1_3:183211997-183273441:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2744140625	2	523.272978	1044.5314	3.4156	0.0017873	-0.39595	-0.00020719	3.0197	0.0015801	523.2727492537676	36.209	1.5536	36.209	35.996	37.55	0					91	31	7	0	0	0	0.05357	1	14154	14154		94.006	24.379	1	56175000			6784	6372	3499	3527	6937	6937					0.01091882339642325
CPFCRHAK	8	Unmodified	_CPFCRHAK_					0	0	0		ENST00000464507.1_1_1:10500374-10502459:+|nuORF	ENST00000464507.1_1_1:10500374-10502459:+|nuORF	ENST00000464507.1_1_1:10500374-10502459:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2276306152344	2	481.228382	960.442211	-2.9231	-0.0014067	1.3146	0.00063264	-1.6085	-0.00077406	481.22911300645046	36.238	0.25517	36.238	36.06	36.315	0					13	9	2	0	0	0	0.6282	1	12983	12983		44.531	5.2782	1	108870			6785	9770	3500	3528	6938	6938					-0.03959231100884608
CPFLRPGI	8	Unmodified	_CPFLRPGI_					0	0	0		ENST00000259089.8_1_8:11421650-11421836:+|nuORF	ENST00000259089.8_1_8:11421650-11421836:+|nuORF	ENST00000259089.8_1_8:11421650-11421836:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.75042724609375	2	451.749473	901.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.203	1	37.203	36.703	37.703	0								0	0	0	1.7419	1	14538	14538		37.028	1.8278	1				6786	8282	3501	3529	6939	6939					0.029710675791534413
CPFQKRRLDG	10	Unmodified	_CPFQKRRLDG_					0	0	0		nc|ENSG00000112249|Q8N3C0-3|ASCC3	nc|ENSG00000112249|Q8N3C0-3|ASCC3	nc|ENSG00000112249|Q8N3C0-3|ASCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.322021484375	2	610.321857	1218.62916	-0.71985	-0.00043934	0.92166	0.00056251	0.20181	0.00012317	610.3224997388713	22.882	0.47006	22.882	22.793	23.263	0					19	11	2	0	0	0	0.30252	1	7510	7510		64.207	20.556	1	421980			6787	11484	3502	3530	6940	6940					0.02859083988346356
CPFTMARNK	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PFTMARNK_	C(1)PFTMARNK		C(66)PFTMARNK		0	1	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7713012695312	2	562.770611	1123.52667	3.4706	0.0019532	-1.3938	-0.00078437	2.0768	0.0011688	562.7691399604154	26.315	0.41845	26.315	26.117	26.536	0					23	8	4	0	0	0	0.16002	1	9324	9324		66.429	6.311	1	1086200			6788	3077	3503	3531	6941	6941	117				-0.03015325074784414
CPGKMDSGRL	10	Unmodified	_CPGKMDSGRL_					0	0	0			REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF	REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.25439453125	2	532.254794	1062.49503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.063	1	17.063	16.563	17.563	0								0	0	0	0.39665	1	4203	4203		31.53	1.0262	1		+		6789	18090	3504	3532	6942	6942					-0.03371317828714382
CPGRAIVTI	9	Unmodified	_CPGRAIVTI_					0	0	0			REV__nc|ENSG00000241697|Q8IYR6-2|TMEFF1	REV__nc|ENSG00000241697|Q8IYR6-2|TMEFF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2674865722656	2	465.265487	928.516422	-0.68145	-0.00031706	1.2088	0.00056239	0.5273	0.00024533	465.26602419901155	30.007	0.76165	30.007	29.644	30.405	0					56	19	4	0	0	0	0.25109	1	10815	10815		55.504	4.1688	1	2298400	+		6790	17688	3505	3533	6943	6943					0.04930435262303945
CPHCKKVI	8	Unmodified	_CPHCKKVI_					0	0	0		ENST00000467157.1_1_3:122864388-122880365:+|nuORF;ENSG00000065485|ENST00000316218|PDIA5	ENST00000467157.1_1_3:122864388-122880365:+|nuORF	ENST00000467157.1_1_3:122864388-122880365:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.247802734375	2	464.248783	926.483013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.395	1	18.395	17.895	18.895	0								0	0	0	1.7419	1	4570	4570		37.028	3.5129	1				6791	1372	3506	3534	6944	6944					0.016831102187438773
CPHCQQAI	8	Unmodified	_CPHCQQAI_					0	0	0		nc|ENSG00000089486|Q9H305-3|CDIP1;nc|ENSG00000089486|Q9H305-2|CDIP1;ENSG00000089486|ENST00000567695|CDIP1	nc|ENSG00000089486|Q9H305-3|CDIP1	nc|ENSG00000089486|Q9H305-3|CDIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.19732666015625	2	450.196748	898.378942	-0.47913	-0.0002157	1.2742	0.00057362	0.79503	0.00035792	450.1973590210835	36.582	0.15134	36.582	36.485	36.636	0					6	4	2	0	0	0	0.74117	1	13805	13805		28.254	3.7503	1	102370			6792	1816	3507	3535	6945	6945					-0.07431216608779323
CPHTIGVEF	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PHTIGVEF_	C(1)PHTIGVEF		C(74)PHTIGVEF		0	1	0		ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.25048828125	2	530.250034	1058.48552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.46	1	37.46	36.96	37.96	0								0	0	0	0.09203	1	12267	12267		73.975	16.163	1				6793	3108	3508	3536	6946	6946	120				-0.04138762842603683
CPIDFVFLE	9	Unmodified	_CPIDFVFLE_					0	0	0			REV__SYT4|p.I370Mfs*3|1|0.37|ENSG00000132872|chr18:43270508-43270509|TT/-|frameshift_variant	REV__SYT4|p.I370Mfs*3|1|0.37|ENSG00000132872|chr18:43270508-43270509|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7644653320312	2	541.764986	1081.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.166	1	40.166	39.666	40.666	0								0	0	0	0.27166	1	15928	15928		40.573	3.4135	1		+		6794	14681	3509	3537	6947	6947					-0.02207823897288108
CPIKLSAVKNI	11	Unmodified	_CPIKLSAVKNI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.9040832519531	3	395.905648	1184.69511	-1.2796	-0.00050661	-1.7978	-0.00071176	-3.0774	-0.0012184	395.90494655580443	31.161	0.17001	31.161	31.112	31.282	0					11	6	3	0	0	0	0.4771	1	10296	10296		45.908	7.1545	1	248460	+		6795	15602;22247	3510	3538	6948	6948					0.1101548011054092
CPITDQDPI	9	Unmodified	_CPITDQDPI_					0	0	0			REV__ENST00000555784.5_1_10:84711227-84745358:+|nuORF	REV__ENST00000555784.5_1_10:84711227-84745358:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.23382568359375	2	501.23405	1000.45355	0.031909	1.5994E-05	-0.39789	-0.00019944	-0.36598	-0.00018344	501.233881485659	30.156	1.5056	30.156	28.878	30.384	0					62	32	4	0	0	0	0.47038	1	11100	11100		35.618	0	1	741360	+		6796	17042	3511	3539	6949	6949					-0.04666175316413046
CPKFLHTDI	9	Unmodified	_CPKFLHTDI_					0	0	0			REV__nc|ENSG00000139146|Q9NP50-2|SINHCAF	REV__nc|ENSG00000139146|Q9NP50-2|SINHCAF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2765502929688	2	537.276052	1072.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.014	1	43.014	42.514	43.514	0								0	0	0	0.28191	1	16854	16854		31.53	0	1		+		6797	15012	3512	3540	6950	6950					0.004184005711522332
CPKKCMERV	9	Unmodified	_CPKKCMERV_					0	0	0			REV__ENST00000274000.9_2_4:113189630-113189738:+|nuORF	REV__ENST00000274000.9_2_4:113189630-113189738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.27099609375	2	547.26939	1092.52423	0.44505	0.00024356	2.6433	0.0014466	3.0884	0.0016902	547.2706973237296	30.504	0.094074	30.504	30.445	30.539	0					5	3	2	0	0	0	0.54267	1	10037	10037		27.882	1.1893	1	65823	+		6798	18110	3513	3541	6951	6951					-0.01833496804101742
CPKKKWHL	8	Unmodified	_CPKKKWHL_					0	0	0		ENSG00000173557|ENST00000329615|FAM166C;ENST00000479453.1_1_2:26802129-26802303:+|nuORF	ENSG00000173557|ENST00000329615|FAM166C	ENSG00000173557|ENST00000329615|FAM166C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.2009582519531	3	347.200507	1038.57969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.351	1	47.351	46.851	47.851	0								0	0	0	1.7419	1	18096	18096		33.516	6.8227	1				6799	6435	3514	3542	6952	6952					0.061944207701799314
CPLCWGERK	9	Unmodified	_CPLCWGERK_					0	0	0		ENST00000295400.10_1_2:70677022-70677121:-|nuORF	ENST00000295400.10_1_2:70677022-70677121:-|nuORF	ENST00000295400.10_1_2:70677022-70677121:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2593383789062	2	546.259879	1090.50521	-1.5001	-0.00081945	2.4749	0.0013519	0.97479	0.00053249	546.2607356381185	41.475	0.15995	41.475	41.368	41.528	0					14	9	2	0	0	0	0.47038	1	14604	14604		35.618	3.6634	1	48987			6800	8449	3515	3543	6953	6953					-0.03642710103508762
CPLLDQTLNS	10	Unmodified	_CPLLDQTLNS_					0	0	0		chr19:41761527-41770802|220|23.97|0.5|5.59|+|1|CEACAM6,CEACAM6|2	chr19:41761527-41770802|220|23.97|0.5|5.59|+|1|CEACAM6,CEACAM6|2	chr19:41761527-41770802|220|23.97|0.5|5.59|+|1|CEACAM6,CEACAM6|2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.27587890625	2	552.273706	1102.53286	0.60642	0.00033491	2.4789	0.001369	3.0853	0.0017039	552.2751251858637	20.035	0.29193	20.035	19.903	20.195	0					11	6	3	0	0	0	0.34667	1	6146	6146		62.107	9.0185	1	705320			6801	527	3516	3544	6954	6954					-0.014305283622661591
CPLMLGRQL	9	Unmodified	_CPLMLGRQL_					0	0	0			REV__ENST00000315082.8_1_16:723515-723827:+|nuORF	REV__ENST00000315082.8_1_16:723515-723827:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.780029296875	2	515.780447	1029.54634	0.21298	0.00010985	-2.5291	-0.0013045	-2.3161	-0.0011946	515.7790511727063	21.68	0.19659	21.68	21.605	21.801	0					10	6	2	0	0	0	0.41354	1	6000	6000		40.573	1.819	1	133560	+		6802	18293	3517	3545	6955	6955					0.03275050935985746
CPLRGAGTVA	10	Unmodified	_CPLRGAGTVA_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.253173828125	2	472.752744	943.490935	0.59236	0.00028004	-0.9434	-0.00044599	-0.35104	-0.00016596	472.7524673458974	24.823	0.76257	24.823	24.494	25.256	0					36	15	3	0	0	0	0.51121	1	8879	8879		44.117	1.7207	1	3192100	+		6803	14981	3518	3546	6956	6956					0.016929607398765256
CPMAERWL	8	Unmodified	_CPMAERWL_					0	0	0		ENST00000372518.4_1_20:44519377-44519782:-|nuORF	ENST00000372518.4_1_20:44519377-44519782:-|nuORF	ENST00000372518.4_1_20:44519377-44519782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2380676269531	2	503.235873	1004.45719	0.575	0.00028936	2.3245	0.0011698	2.8995	0.0014591	503.23722515430785	20.514	0.15947	20.514	20.409	20.568	0					11	5	3	0	0	0	0.66372	1	5502	5502		38.806	3.6541	1	88947			6804	8979	3519	3547	6957	6957					-0.04485784023540873
CPMPHIPWP	9	Unmodified	_CPMPHIPWP_					0	0	0		MAB21L2|p.W187C|1|0.86|ENSG00000181541|chr4:150583590-150583590|G/T|missense_variant	MAB21L2|p.W187C|1|0.86|ENSG00000181541|chr4:150583590-150583590|G/T|missense_variant	MAB21L2|p.W187C|1|0.86|ENSG00000181541|chr4:150583590-150583590|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.2559814453125	2	539.254065	1076.49358	1.0135	0.00054653	1.4557	0.00078499	2.4692	0.0013315	539.2547210339901	35.783	0.15446	35.783	35.688	35.842	0					8	5	2	0	0	0	0.31222	1	12779	12779		49.211	10.405	1	57210			6805	11343	3520	3548	6958	6958					-0.0416090712683399
CPNGGSLTHTY	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PNGGSLTHTY_	C(1)PNGGSLTHTY		C(50)PNGGSLTHTY		0	1	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	603.7657470703125	2	603.764037	1205.51352	0.14709	8.8808E-05	0.18772	0.00011334	0.33481	0.00020214	603.764157693789	25.458	0.29383	25.458	25.292	25.586	0					20	11	2	0	0	0	0.42746	1	7619	7619		49.536	22.489	1	82416			6806	11716	3521	3549	6959	6959	463				-0.08101484653184343
CPNGGSLTHTY	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PNGGSLTHTY_	C(1)PNGGSLTHTY		C(86)PNGGSLTHTY		0	1	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	603.7639770507812	2	603.764037	1205.51352	-0.39029	-0.00023564	0.36884	0.00022269	-0.021454	-1.2953E-05	603.7643467052611	25.668	0.39033	25.668	25.525	25.916	0					22	7	4	0	0	0	0.11572	1	8784	8784		85.862	42.998	1	637590			6807	11716	3521	3549	6960	6960	463				-0.08101484653184343
CPNGGSLTHTY	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PNGGSLTHTY_	C(1)PNGGSLTHTY		C(160)PNGGSLTHTY		0	1	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	603.7648315429688	2	603.764037	1205.51352	0.36789	0.00022212	0.39964	0.00024129	0.76753	0.00046341	603.7644711750962	25.662	0.4473	25.662	25.519	25.967	0					17	7	3	0	0	0	5.5066E-05	1	9130	9130		159.28	90.489	1	408530			6808	11716	3521	3549	6961	6961	463				-0.08101484653184343
CPNGGSLTHTY	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PNGGSLTHTY_	C(1)PNGGSLTHTY		C(74)PNGGSLTHTY		0	1	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.2660522460938	2	603.764037	1205.51352	-1.9027	-0.0011488	2.2076	0.0013329	0.30486	0.00018407	604.266803448609	25.502	0.3131	25.502	25.373	25.687	0					14	8	2	0	0	0	0.20102	1	8113	8113		74.165	19.443	1	93669			6809	11716	3521	3549	6962	6962	463				-0.08101484653184343
CPPLRRWR	8	Unmodified	_CPPLRRWR_					0	0	0			REV__ENSG00000099949|ENST00000646124|LZTR1	REV__ENSG00000099949|ENST00000646124|LZTR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.8698425292969	3	361.871272	1082.59199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.02	1	33.02	32.52	33.52	0								0	0	0	1.7419	1	11547	11547		24.203	0.82484	1		+		6810	13504	3522	3550	6963	6963					0.05399457233238536
CPQAWGRR	8	Unmodified	_CPQAWGRR_					0	0	0			REV__ENST00000372564.7_1_9:131770823-131770958:-|nuORF	REV__ENST00000372564.7_1_9:131770823-131770958:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2417907714844	2	487.242878	972.471203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.32	1	19.32	18.82	19.82	0								0	0	0	1.7419	1	5223	5223		26.796	1.3459	1		+		6811	18671	3523	3551	6964	6964					-0.01613370480231424
CPQPLFKVGA	10	Unmodified	_CPQPLFKVGA_					0	0	0		nc|ENSG00000132297|C9JL84-2|HHLA1;ENSG00000132297|ENST00000414222|HHLA1	nc|ENSG00000132297|C9JL84-2|HHLA1	nc|ENSG00000132297|C9JL84-2|HHLA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2862548828125	2	530.28642	1058.55829	0.2869	0.00015214	-0.38392	-0.00020359	-0.097018	-5.1448E-05	530.2861586599099	14.488	0.14604	14.488	14.393	14.539	0					5	3	2	0	0	0	0.70967	1	3780	3780		21.96	21.96	1	257880			6812	3773	3524	3552	6965	6965					0.0313499095084353
CPRIGSTQ	8	Unmodified	_CPRIGSTQ_					0	0	0			REV__ENST00000566834.5_2_16:68298472-68307791:+|nuORF	REV__ENST00000566834.5_2_16:68298472-68307791:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.7177734375	2	431.215995	860.417436	0.19645	8.4712E-05	-0.50533	-0.00021791	-0.30888	-0.00013319	431.2155963178947	17.651	0.1467	17.651	17.577	17.723	0					6	3	2	0	0	0	0.74405	1	4441	4441		27.882	0	1	85337	+		6813	20308	3525	3553	6966	6966					-0.018355877026010603
CPRMRQLA	8	Oxidation (M)	_CPRM(Oxidation (M))RQLA_		CPRM(1)RQLA		CPRM(52)RQLA	0	0	1		ENST00000382952.7_2_4:1205601-1205772:-|nuORF	ENST00000382952.7_2_4:1205601-1205772:-|nuORF	ENST00000382952.7_2_4:1205601-1205772:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7583312988281	2	495.752221	989.48989	2.8526	0.0014142	0.73595	0.00036485	3.5885	0.001779	495.7526235385625	25.132	1.0563	25.132	24.645	25.701	0					74	21	5	0	0	0	0.57802	1	8966	8966		52.299	6.3472	1	13226000			6814	9127	3526	3554	6967	6967		366			-0.005275769006857445
CPRPASFLQS	10	Unmodified	_CPRPASFLQS_					0	0	0			REV__SLC18A1|p.F54Lfs*39|1|0.1|ENSG00000036565|chr8:20179446-20179447|TG/-|frameshift_variant	REV__SLC18A1|p.F54Lfs*39|1|0.1|ENSG00000036565|chr8:20179446-20179447|TG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.1867980957031	3	369.186814	1104.53861	0.88843	0.000328	-1.1834	-0.00043688	-0.29492	-0.00010888	369.1864880920701	21.378	0.26777	21.378	21.271	21.539	0					14	5	4	0	0	0	0.58189	1	6960	6960		34.087	0	1	1764700	+		6815	21526	3527	3555	6968	6968					-0.009473850599533762
CPRYLLGV	8	Unmodified	_CPRYLLGV_					0	0	0		nc|ENSG00000158485|P29016-2|CD1B;ENSG00000158485|ENST00000368168|CD1B	nc|ENSG00000158485|P29016-2|CD1B	nc|ENSG00000158485|P29016-2|CD1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.755615234375	2	460.754756	919.494958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.71	1	11.71	11.21	12.21	0								0	0	0	1.7419	1	2466	2466		29.842	0	1				6816	5264	3528	3556	6969	6969					0.031990502335929705
CPSAPRPQLAG	11	Unmodified	_CPSAPRPQLAG_					0	0	0			REV__nc|ENSG00000224383|P0C7W0-3|PRR29	REV__nc|ENSG00000224383|P0C7W0-3|PRR29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7828369140625	2	548.782033	1095.54951	1.2531	0.00068768	0.45302	0.00024861	1.7061	0.00093629	548.7821459828001	20.902	0.16425	20.902	20.825	20.99	0					10	5	3	0	0	0	0.35529	1	5660	5660		56.434	3.0823	1	263690	+		6817	17622	3529	3557	6970	6970					0.005560173143521752
CPSAWCLSL	9	Unmodified	_CPSAWCLSL_					0	0	0			REV__ENST00000394361.8_1_16:57596005-57608989:+|nuORF	REV__ENST00000394361.8_1_16:57596005-57608989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2228698730469	2	490.222431	978.430309	0.59751	0.00029292	0.62987	0.00030878	1.2274	0.00060169	490.22282925651825	38.763	0.25041	38.763	38.677	38.928	0					15	9	2	0	0	0	0.35045	1	15227	15227		45.952	1.4209	1	146100	+		6818	18863	3530	3558	6971	6971					-0.05976892634714659
CPSYMCKR	8	Unmodified	_CPSYMCKR_					0	0	0			REV__ENST00000477575.1_1_10:99237043-99237649:-|nuORF	REV__ENST00000477575.1_1_10:99237043-99237649:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2134094238281	2	494.214083	986.413613	-2.5128	-0.0012418	1.4967	0.00073967	-1.0161	-0.00050218	494.2149380416762	18.8	0.29024	18.8	18.638	18.928	0					16	7	3	0	0	0	0.79719	1	4928	4928		18.324	18.324	1	214780	+		6819	19553	3531	3559	6972	6972					-0.08013716792322612
CPTGWKEL	8	Unmodified	_CPTGWKEL_					0	0	0			REV__ENST00000367765.5_1_1:170015969-170024554:-|nuORF	REV__ENST00000367765.5_1_1:170015969-170024554:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2294921875	2	467.228571	932.442588	2.6437	0.0012352	-0.55765	-0.00026055	2.086	0.00097465	467.2282733088875	20.167	0.21684	20.167	20.06	20.277	0					9	4	3	0	0	0	0.49216	1	6374	6374		60.972	2.19	1	702590	+		6820	18598	3532	3560	6973	6973					-0.02633532900017599
CPTHGAWA	8	Unmodified	_CPTHGAWA_					0	0	0		ENST00000485991.5_1_X:47485455-47487711:-|nuORF;CFP|p.C439Wfs*5|1|0.05|ENSG00000126759|chrX:47624368-47624369|-/ATAAACTAGC|frameshift_variant;ENSG00000126759|ENST00000396992|CFP	ENST00000485991.5_1_X:47485455-47487711:-|nuORF	ENST00000485991.5_1_X:47485455-47487711:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.6846618652344	2	421.68433	841.354108	-0.90306	-0.00038081	1.2576	0.00053029	0.35449	0.00014948	421.68491576432194	41.577	0.25321	41.577	41.444	41.698	0					16	12	2	0	0	0	0.66238	1	15786	15786		39.021	9.18	1	55566			6821	499	3533	3561	6974	6974					-0.07291528419841597
CPTIHKFK	8	Unmodified	_CPTIHKFK_					0	0	0			REV__PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant	REV__PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2687072753906	2	487.26803	972.521507	-0.0024859	-1.2113E-06	1.8667	0.00090959	1.8642	0.00090838	487.2690188422966	21.537	0.22893	21.537	21.454	21.683	0					16	8	3	0	0	0	0.58597	1	5966	5966		51.335	1.8939	1	201510	+		6822	21402	3534	3562	6975	6975					0.03414739124912103
CPTKLVKSA	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PTKLVKSA_	C(1)PTKLVKSA		C(51)PTKLVKSA		0	1	0		AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000420969.1_1_2:162357792-162360000:-|nuORF;ENST00000470300.5_1_1:247004234-247028597:-|nuORF	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.78094482421875	2	502.283877	1002.5532	0.054162	2.7205E-05	-1.5457	-0.0007764	-1.4916	-0.0007492	502.28360330461084	33.028	0.59516	33.028	32.688	33.283	0					28	14	4	0	0	0	0.2873	1	12476	12476		51.335	8.9393	1	1788200			6823	97	3535	3563	6976	6976	4				0.05202687088217317
CPTVLTMGKA	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PTVLTMGKA_	C(1)PTVLTMGKA		C(48)PTVLTMGKA		0	1	0			REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2755737304688	2	539.275195	1076.53584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.454	1	13.454	12.954	13.954	0								0	0	0	0.32041	1	3279	3279		47.657	12.039	1		+		6824	12704	3536	3564	6977	6977	500				0.0006302349090674397
CPVCLQKRVEE	11	Unmodified	_CPVCLQKRVEE_					0	0	0		PXDN|p.A1475V|1|0.14|ENSG00000130508|chr2:1634220-1634220|G/A|missense_variant	PXDN|p.A1475V|1|0.14|ENSG00000130508|chr2:1634220-1634220|G/A|missense_variant	PXDN|p.A1475V|1|0.14|ENSG00000130508|chr2:1634220-1634220|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	652.3263549804688	2	652.32849	1302.64243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.346	1	34.346	33.846	34.846	0								0	0	0	0.41918	1	13231	13231		32.812	2.4947	1				6825	11990	3537	3565	6978	6978					0.003211539854419243
CPVLGCMQY	9	Carbamidomethyl (C)	_CPVLGC(Carbamidomethyl (C))MQY_	C(0.029)PVLGC(0.971)MQY		C(-15)PVLGC(15)MQY		0	1	0			REV__tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	REV__tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7256469726562	2	535.727023	1069.43949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.591	1	25.591	25.091	26.091	0								0	0	0	0.19085	1	8159	8159		52.299	6.3472	2		+		6826	21945	3538	3566	6979	6979	746				-0.09244867340703422
CPVQRGSKV	9	Unmodified	_CPVQRGSKV_					0	0	0			REV__ENST00000453008.2_1_2:88927414-88927579:+|nuORF	REV__ENST00000453008.2_1_2:88927414-88927579:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2684631347656	2	487.266019	972.517485	0.8118	0.00039556	1.934	0.00094235	2.7458	0.0013379	487.26698127858293	30.916	0.31163	30.916	30.814	31.126	0					12	6	3	0	0	0	0.54267	1	11516	11516		27.882	1.0861	1	320880	+		6827	19325	3539	3567	6980	6980					0.03012649631216391
CPVRLRTY	8	Unmodified	_CPVRLRTY_					0	0	0			REV__ENST00000289228.6_1_2:98273211-98273301:-|nuORF	REV__ENST00000289228.6_1_2:98273211-98273301:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2740173339844	2	504.276386	1006.53822	0.77225	0.00038943	-3.7813	-0.0019068	-3.009	-0.0015174	504.2738510650394	23.491	0.13712	23.491	23.401	23.538	0					8	3	3	0	0	0	0.60719	1	7799	7799		47.916	0.25827	1	295270	+		6828	18151	3540	3568	6981	6981					0.03521240010877591
CPVSARRGCEQ	11	Carbamidomethyl (C)	_CPVSARRGC(Carbamidomethyl (C))EQ_	C(0.002)PVSARRGC(0.998)EQ		C(-27)PVSARRGC(27)EQ		0	1	0			REV__PLEKHA6|p.V328Yfs*172|15|0.36|ENSG00000143850|chr1:204259283-204259283|C/-|frameshift_variant	REV__PLEKHA6|p.V328Yfs*172|15|0.36|ENSG00000143850|chr1:204259283-204259283|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	632.2898559570312	2	631.790063	1261.56557	-0.1693	-0.00010696	-0.93157	-0.00058856	-1.1009	-0.00069552	631.7898562391307	34.679	0.2793	34.679	34.515	34.794	0					10	7	2	0	0	0	0.55715	1	13346	13346		40.058	8.5284	2	107150	+		6829	21386	3541	3569	6982	6982	737				-0.054746445110822606
CPVVAELLGIK	11	Unmodified	_CPVVAELLGIK_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.33837890625	2	571.33611	1140.65767	3.4021	0.0019438	0.12131	6.9312E-05	3.5235	0.0020131	571.3364995273839	26.518	0.57125	26.518	26.168	26.739	0					37	11	4	0	0	0	0.37008	1	9373	9373		54.776	1.8396	1	795650			6830	5161	3542	3570	6983	6983					0.09296388844904868
CPYDGPLGRF	10	Unmodified	_CPYDGPLGRF_					0	0	0			REV__ENST00000356638.7_1_11:62407137-62407200:-|nuORF	REV__ENST00000356638.7_1_11:62407137-62407200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.7649536132812	2	562.763309	1123.51206	0.13124	7.3856E-05	1.9925	0.0011213	2.1237	0.0011951	562.7647748361894	21.424	0.17047	21.424	21.35	21.52	0					12	5	3	0	0	0	0.39566	1	6140	6140		56.721	1.9447	1	383370	+		6831	18523	3543	3571	6984	6984					-0.04475073951266495
CQCGPFCPRTT	11	3 Carbamidomethyl (C)	_C(Carbamidomethyl (C))QC(Carbamidomethyl (C))GPFC(Carbamidomethyl (C))PRTT_	C(1)QC(1)GPFC(1)PRTT		C(44)QC(44)GPFC(44)PRTT		0	3	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	692.7869873046875	2	692.283757	1382.55296	1.4101	0.00097619	0.43516	0.00030126	1.8453	0.0012775	692.2842937713176	31.788	0.13856	31.788	31.699	31.837	0					10	5	3	0	0	0	0.50799	1	10555	10555		43.651	6.1426	1	134730	+		6832	16894	3544	3572	6985	6985	599;600;601				-0.12301423965618596
CQEMQHVI	8	Unmodified	_CQEMQHVI_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2223205566406	2	494.222962	986.431372	-0.4548	-0.00022477	-0.86017	-0.00042511	-1.315	-0.00064989	494.22261177319865	19.302	0.20319	19.302	19.198	19.402	0					10	4	3	0	0	0	0.59411	1	5811	5811		50.025	2.065	1	705890			6833	4694	3545	3573	6986	6986					-0.06238678265822273
CQFSLSKQR	9	Unmodified	_CQFSLSKQR_					0	0	0			REV__ENST00000486086.1_1_7:74015315-74016757:+|nuORF	REV__ENST00000486086.1_1_7:74015315-74016757:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7855834960938	2	548.782033	1095.54951	3.8008	0.0020858	2.1945	0.0012043	5.9952	0.0032901	548.7831790361704	32.849	0.54321	32.849	32.64	33.183	0					18	11	3	0	0	0	0.082776	1	12433	12433		83.647	22.675	1	1150700	+		6834	19662	3546	3574	6987	6987					0.005560173143521752
CQILCIYQ	8	Unmodified	_CQILCIYQ_					0	0	0		ENST00000374379.8_1_1:25140698-25153599:+|nuORF	ENST00000374379.8_1_1:25140698-25153599:+|nuORF	ENST00000374379.8_1_1:25140698-25153599:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.239013671875	2	492.238081	982.461609	-2.6515	-0.0013052	2.5853	0.0012726	-0.066133	-3.2553E-05	492.240089455872	32.923	0.30872	32.923	32.838	33.147	0					13	9	3	0	0	0	0.67394	1	11509	11509		37.159	1.9584	1	362470			6835	9010	3547	3575	6988	6988					-0.030323196006293074
CQIPHFLL	8	Unmodified	_CQIPHFLL_					0	0	0		ENST00000328194.7_2_11:9160490-9160769:-|nuORF	ENST00000328194.7_2_11:9160490-9160769:-|nuORF	ENST00000328194.7_2_11:9160490-9160769:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7635803222656	2	485.762581	969.510608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.438	1	37.438	36.938	37.938	0								0	0	0	1.7419	1	12657	12657		26.796	5.8492	1				6836	8659	3548	3576	6989	6989					0.02463336750633971
CQRQQRQL	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))QRQQRQL_	C(1)QRQQRQL		C(41)QRQQRQL		0	1	0		nc|ENSG00000172869|Q9Y485|DMXL1;DMXL1|p.N3021Mfs*3|1|0.28|ENSG00000172869|chr5:119247193-119247193|A/-|frameshift_variant;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.788818359375	2	558.788181	1115.56181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.398	1	39.398	38.898	39.898	0								0	0	0	1.7419	1	13245	13245		40.573	18.613	1				6837	807	3549	3577	6990	6990	27				0.008650537773974065
CQVCFQIFPN	10	Unmodified	_CQVCFQIFPN_					0	0	0		ENSG00000126804|ENST00000683701|ZBTB1	ENSG00000126804|ENST00000683701|ZBTB1	ENSG00000126804|ENST00000683701|ZBTB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	599.7760009765625	2	599.772819	1197.53109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.352	1	28.352	27.852	28.852	0								0	0	0	0.39244	1	8847	8847		32.812	6.1195	1				6838	3489	3550	3578	6991	6991					-0.05977860651842093
CRAQTPTAVT	10	Unmodified	_CRAQTPTAVT_					0	0	0		SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant	SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant	SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2664794921875	2	524.266216	1046.51788	1.6262	0.00085258	-1.896	-0.00099403	-0.2698	-0.00014144	524.2657250750777	21.378	0.4121	21.378	21.025	21.437	0					12	8	3	0	0	0	0.46128	1	6964	6964		49.536	5.1589	1	602110			6839	22429	3552	3579	6992	6992					-0.0035197543961658084
CRCSLAGHF	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))RC(Carbamidomethyl (C))SLAGHF_	C(1)RC(1)SLAGHF		C(74)RC(74)SLAGHF		0	2	0		ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2465209960938	2	554.24476	1106.47497	3.6077	0.0019996	0.047681	2.6427E-05	3.6554	0.002026	554.2448428550923	31.003	0.30948	31.003	30.898	31.207	0					10	6	2	0	0	0	0.1236	1	11533	11533		73.975	13.681	1	554460			6840	5732	3553	3580	6993	6993	239;240				-0.07401068768672303
CREKISEL	8	Unmodified	_CREKISEL_					0	0	0		nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;NEK10|p.L420Sfs*2|1|0.03|ENSG00000163491|chr3:27295662-27295663|-/TG|frameshift_variant;NEK10|p.I421Dfs*6|1|0.03|ENSG00000163491|chr3:27295660-27295661|-/GATC|frameshift_variant	nc|ENSG00000163491|Q6ZWH5-4|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2559814453125	2	489.257859	976.501166	-2.8657	-0.0014021	-0.60421	-0.00029562	-3.4699	-0.0016977	489.2576337494954	29.788	0.30219	29.788	29.563	29.865	0					10	8	2	0	0	0	0.68432	1	10012	10012		35.618	1.4457	1	61144			6841	5563	3554	3581	6994	6994					0.011975236744319773
CRFAATAF	8	Unmodified	_CRFAATAF_					0	0	0			REV__PXDNL|p.F1055C|1|0.23|ENSG00000147485|chr8:51408460-51408460|A/C|missense_variant	REV__PXDNL|p.F1055C|1|0.23|ENSG00000147485|chr8:51408460-51408460|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.71527099609375	2	443.71563	885.416708	-0.29198	-0.00012956	-0.18952	-8.4093E-05	-0.4815	-0.00021365	443.7154160253541	26.655	0.43114	26.655	26.581	27.012	0					21	14	2	0	0	0	0.65276	1	8132	8132		40.573	1.7665	1	161530	+		6842	21433	3555	3582	6995	6995					-0.030583823516622033
CRGACLLKP	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))RGACLLKP_	C(0.994)RGAC(0.006)LLKP		C(22)RGAC(-22)LLKP		0	1	0			REV__nc|ENSG00000183597|Q6ICL3-6|TANGO2	REV__nc|ENSG00000183597|Q6ICL3-6|TANGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2718200683594	2	509.270247	1016.52594	1.3397	0.00068229	1.1796	0.00060073	2.5193	0.001283	509.270854972055	39.34	0.28313	39.34	39.243	39.526	0					11	6	2	0	0	0	0.2873	1	15528	15528		51.335	51.335	2	657750	+		6843	21155	3556	3583	6996	6996	728				0.018338802761832085
CRGQSRKK	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))RGQSRKK_	C(1)RGQSRKK		C(42)RGQSRKK		0	1	0			REV__ENST00000403821.6_2_12:57691915-57693200:-|nuORF	REV__ENST00000403821.6_2_12:57691915-57693200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2808532714844	2	510.279992	1018.54543	0.96469	0.00049226	1.1608	0.00059232	2.1255	0.0010846	510.2805486656133	27.586	0.30231	27.586	27.46	27.762	0					13	7	3	0	0	0	0.64144	1	9649	9649		42.396	42.396	1	478680	+		6844	18962	3557	3584	6997	6997	680				0.03689972611300618
CRHWGSSRPA	10	Unmodified	_CRHWGSSRPA_					0	0	0			REV__ENST00000401985.3_1_5:179221106-179223480:+|nuORF	REV__ENST00000401985.3_1_5:179221106-179223480:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.77734375	2	578.775074	1155.53559	1.7291	0.0010008	0.71449	0.00041353	2.4436	0.0014143	578.7754971790456	41.082	0.70126	41.082	40.748	41.449	0					42	14	4	0	0	0	0.6796	1	16441	16441		24.519	24.519	1	626450	+		6845	18953	3558	3585	6998	6998					-0.03595215394079787
CRIAAMDWI	9	Unmodified	_CRIAAMDWI_					0	0	0		ENST00000264689.10_1_4:186329146-186329518:-|nuORF	ENST00000264689.10_1_4:186329146-186329518:-|nuORF	ENST00000264689.10_1_4:186329146-186329518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7637939453125	2	539.762255	1077.50996	3.4481	0.0018612	-1.0262	-0.00055391	2.4219	0.0013073	539.7619372548745	32.731	0.86037	32.731	32.186	33.046	0					35	17	3	0	0	0	0.13726	1	12361	12361		74.255	26.598	1	1637400			6846	8335	3559	3586	6999	6999					-0.025698259607224827
CRKIMMWLA	9	Unmodified	_CRKIMMWLA_					0	0	0			REV__ENSG00000127249|ENST00000342695|ATP13A4	REV__ENSG00000127249|ENST00000342695|ATP13A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.298095703125	2	576.29795	1150.58135	1.8045	0.00104	-2.8379	-0.0016355	-1.0334	-0.00059554	576.2968799622364	40.621	0.19678	40.621	40.519	40.716	0					20	8	4	0	0	0	0.043797	1	16002	16002		97.473	23.218	1	145060	+		6847	14483	3560	3587	7000	7000					0.01207970472296438
CRKQLGLVA	9	Unmodified	_CRKQLGLVA_					0	0	0		ENSG00000127954|ENST00000380079|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.29486083984375	2	494.292037	986.56952	2.7975	0.0013828	1.9498	0.00096375	4.7472	0.0023465	494.29282966755414	41.71	0.22606	41.71	41.622	41.848	0					10	6	2	0	0	0	0.41354	1	16619	16619		40.573	3.5441	1	87804			6848	3524	3561	3588	7001	7001					0.07569813044960938
CRLVTPQFL	9	Unmodified	_CRLVTPQFL_					0	0	0			REV__ILDR2|p.N157Mfs*117|1|0.23|ENSG00000143195|chr1:166956762-166956762|T/-|frameshift_variant	REV__ILDR2|p.N157Mfs*117|1|0.23|ENSG00000143195|chr1:166956762-166956762|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3015747070312	2	538.799694	1075.58484	2.0527	0.001106	-0.51017	-0.00027488	1.5426	0.00083113	539.3003402535718	40.709	0.36514	40.709	40.578	40.943	0					9	6	2	0	0	0	0.17854	1	16174	16174		64.207	0.901	1	331150	+		6849	15175	3562	3589	7002	7002					0.050066798421539715
CRNTEENK	8	Unmodified	_CRNTEENK_					0	0	0		ENST00000509161.1_1_4:142244738-142244810:-|nuORF	ENST00000509161.1_1_4:142244738-142244810:-|nuORF	ENST00000509161.1_1_4:142244738-142244810:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.228271484375	2	497.224548	992.434543	2.9038	0.0014438	3.5538	0.001767	6.4576	0.0032109	497.2268205098734	26.323	0.36821	26.323	26.117	26.486	0					18	7	4	0	0	0	0.29286	1	9300	9300		84.916	5.2029	1	1270900			6850	10220	3563	3590	7003	7003					-0.06197711887455171
CRPGMSFLK	9	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))RPGM(Oxidation (M))SFLK_	C(1)RPGMSFLK	CRPGM(1)SFLK	C(41)RPGMSFLK	CRPGM(41)SFLK	0	1	1			REV__ENST00000479836.1_1_1:176762700-176805848:+|nuORF	REV__ENST00000479836.1_1_1:176762700-176805848:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2747802734375	2	556.272986	1110.53142	3.5304	0.0019639	-0.0067422	-3.7505E-06	3.5237	0.0019601	556.2729153212792	44.881	0.63538	44.881	44.757	45.392	0					78	27	4	0	0	0	0.41113	1	17955	17955		40.778	7.9657	1	4242100	+		6851	19580	3564	3591	7004	7004	694	718			-0.019424409320208724
CRPLHYIA	8	Unmodified	_CRPLHYIA_					0	0	0		OR2G6|p.R131H|1|0.1|ENSG00000188558|chr1:248522038-248522038|G/A|missense_variant	OR2G6|p.R131H|1|0.1|ENSG00000188558|chr1:248522038-248522038|G/A|missense_variant	OR2G6|p.R131H|1|0.1|ENSG00000188558|chr1:248522038-248522038|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7587890625	2	486.75783	971.501106	-0.31329	-0.0001525	3.1236	0.0015204	2.8103	0.0013679	486.7590760674441	31.516	0.29405	31.516	31.402	31.696	0					14	7	3	0	0	0	0.55361	1	11477	11477		54.765	1.6757	1	303550			6852	11875	3565	3592	7005	7005					0.014215684650821458
CRQGLPFAAW	10	Unmodified	_CRQGLPFAAW_					0	0	0		PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;PPFIA3|p.A828S|1|0.75|ENSG00000177380|chr19:49142053-49142053|G/T|missense_variant	PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant	PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.788818359375	2	574.787118	1147.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.795	1	13.795	13.295	14.295	0								0	0	0	0.40002	1	3439	3439		30.504	7.4612	1				6853	6661	3566	3593	7006	7006					-0.008193749604288314
CRRCIFAL	8	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))RRC(Carbamidomethyl (C))IFAL_	C(1)RRC(1)IFAL		C(41)RRC(41)IFAL		0	2	0		ENSG00000119403|ENST00000373896|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	365.8563537597656	3	365.856523	1094.54774	0.47243	0.00017284	-0.82203	-0.00030075	-0.3496	-0.0001279	365.8561119648548	21.678	0.077671	21.678	21.616	21.694	0					6	2	3	0	0	0	0.65276	1	6005	6005		40.573	7.8221	1	109810			6854	3112	3567	3594	7007	7007	121;122				0.004246850247454859
CRRRGSRRRK	10	Unmodified	_CRRRGSRRRK_					0	0	0			REV__CPLX2|p.K33Rfs*40|1|0.12|ENSG00000145920|chr5:175878970-175878970|A/-|frameshift_variant	REV__CPLX2|p.K33Rfs*40|1|0.12|ENSG00000145920|chr5:175878970-175878970|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2681579589844	3	444.265567	1329.77487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.494	1	29.494	28.994	29.994	0								0	0	0	0.29594	1	10927	10927		51.528	4.3001	1		+		6855	12629	3568	3595	7008	7008					0.12317404347754746
CRSFRRHL	8	Unmodified	_CRSFRRHL_					0	0	0		ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7864990234375	2	537.790527	1073.5665	-0.31572	-0.00016979	-3.8067	-0.0020472	-4.1225	-0.002217	537.7886594781914	26.638	0.25193	26.638	26.574	26.826	0					14	9	2	0	0	0	0.54629	1	8454	8454		55.504	0.72789	1	195170			6856	1968	3569	3596	7009	7009					0.032659827108318495
CRSLGCPQNGH	11	Carbamidomethyl (C)	_CRSLGC(Carbamidomethyl (C))PQNGH_	C(0.013)RSLGC(0.987)PQNGH		C(-19)RSLGC(19)PQNGH		0	1	0			REV__ENST00000245663.8_1_20:62378074-62378224:-|nuORF	REV__ENST00000245663.8_1_20:62378074-62378224:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.7709350585938	2	614.769131	1227.52371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.602	1	30.602	30.102	31.102	0								0	0	0	0.32997	1	11455	11455		47.96	9.1534	2		+		6857	17942	3570	3597	7010	7010	628				-0.0809520019959109
CRSLSPAPA	9	Unmodified	_CRSLSPAPA_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.232177734375	2	451.231645	900.448736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.415	1	24.415	23.915	24.915	0								0	0	0	0.35899	1	8544	8544		23.042	0.46283	1		+		6858	12458	3571	3598	7011	7011					-0.005470146685183863
CRSVNQFR	8	Unmodified	_CRSVNQFR_					0	0	0			REV__ENST00000473373.1_1_20:34214440-34214716:-|nuORF	REV__ENST00000473373.1_1_20:34214440-34214716:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2515563964844	2	505.253443	1008.49233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.703	1	29.703	29.203	30.203	0								0	0	0	1.7419	1	9400	9400		54.776	5.2403	1		+		6859	19503	3572	3599	7012	7012					-0.011574051713637346
CRTCTCPTARR	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))RTCTC(Carbamidomethyl (C))PTARR_	C(0.97)RTC(0.081)TC(0.949)PTARR		C(15)RTC(-13)TC(13)PTARR		0	2	0			REV__ENST00000377401.3_1_6:27775545-27775608:-|nuORF	REV__ENST00000377401.3_1_6:27775545-27775608:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	691.3145751953125	2	691.315922	1380.61729	-1.7667	-0.0012213	0.66796	0.00046177	-1.0987	-0.00075954	691.3162521475587	35.978	0.16518	35.978	35.892	36.057	0					12	4	3	0	0	0	0.46959	1	13525	13525		46.457	12.284	3	234070	+		6860	18731	3573	3600	7013	7013	669;670				-0.05779224088814772
CRVPLETCM	9	Carbamidomethyl (C)	_CRVPLETC(Carbamidomethyl (C))M_	CRVPLETC(1)M		C(-48)RVPLETC(48)M		0	1	0		SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant;SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant;SPATA31A1|p.T1192Nfs*14|1|0.28|ENSG00000204849|chr9:39361333-39361334|-/A|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6;ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7531127929688	2	554.75103	1107.48751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.312	1	35.312	34.812	35.812	0								0	0	0	0.21054	1	12572	12572		49.442	7.0454	2				6861	7104	3574	3601	7014	7014	300				-0.061937934206525824
CRVTISSGE	9	Unmodified	_CRVTISSGE_					0	0	0			REV__ENST00000584351.5_1_9:22046821-22049161:+|nuORF	REV__ENST00000584351.5_1_9:22046821-22049161:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2319030761719	2	476.231842	950.44913	0.35592	0.0001695	-0.46291	-0.00022045	-0.10698	-5.0949E-05	476.2316631412671	34.575	0.86644	34.575	34.413	35.279	0					38	22	3	0	0	0	0.4966	1	12865	12865		32.812	32.812	1	2217900	+		6862	20467	3575	3602	7015	7015					-0.028076397393078878
CRWPSRVFQM	10	Unmodified	_CRWPSRVFQM_					0	0	0		ENST00000413129.1_1_6:10514549-10514651:-|nuORF	ENST00000413129.1_1_6:10514549-10514651:-|nuORF	ENST00000413129.1_1_6:10514549-10514651:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	655.8185424804688	2	655.31826	1308.62197	-2.4432	-0.001601	-0.052608	-3.4475E-05	-2.4958	-0.0016355	655.3177652406165	14.54	0.070723	14.54	14.501	14.572	0					5	3	2	0	0	0	0.73511	1	3094	3094		10.866	0	1	91260			6863	9329	3576	3603	7016	7016					-0.019999718837425462
CRYTLDPRK	9	Unmodified	_CRYTLDPRK_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.3031005859375	2	576.303133	1150.59171	-0.085884	-4.9495E-05	-0.18197	-0.00010487	-0.26785	-0.00015436	576.303135113148	12.925	0.74525	12.925	12.711	13.456	0					40	20	4	0	0	0	0.50858	1	2791	2791		11.511	4.7755	1	1653600		+	6864	623	3577	3604	7017	7017					0.022439927227196677
CRYYGADELA	10	Unmodified	_CRYYGADELA_					0	0	0			REV__nc|ENSG00000115590|P27930-2|IL1R2	REV__nc|ENSG00000115590|P27930-2|IL1R2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.7559204101562	2	580.755681	1159.49681	0.66667	0.00038717	-0.3791	-0.00022016	0.28757	0.00016701	580.7556379727278	24.965	0.20442	24.965	24.882	25.087	0					9	6	2	0	0	0	0.61187	1	7449	7449		32.812	7.2384	1	56157	+		6865	14116	3578	3605	7018	7018					-0.07655985539122412
CSASKCDE	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SASKCDE_	C(0.999)SASKC(0.001)DE		C(31)SASKC(-31)DE		0	1	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.16680908203125	2	450.16531	898.316067	2.5397	0.0011433	0.91101	0.0004101	3.4507	0.0015534	450.16563211498993	46.057	0.23777	46.057	45.938	46.175	0					24	11	3	0	0	0	0.63077	1	18421	18421		44.117	8.9161	2	241070	+		6866	17155	3579	3606	7019	7019	610				-0.1371582718747959
CSASVIYHY	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SASVIYHY_	C(1)SASVIYHY		C(53)SASVIYHY		0	1	0		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2488403320312	2	550.247492	1098.48043	0.44221	0.00024332	1.3335	0.00073376	1.7757	0.00097708	550.2486613338956	32.45	0.16969	32.45	32.372	32.542	0					7	4	2	0	0	0	0.26904	1	12352	12352		53.351	10.955	1	71570			6867	6008	3580	3607	7020	7020	253				-0.06487066705221878
CSASVIYHY	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SASVIYHY_	C(1)SASVIYHY		C(79)SASVIYHY		0	1	0		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7500610351562	2	550.247492	1098.48043	0.61515	0.00033848	1.5797	0.00086922	2.1948	0.0012077	550.7494736566483	32.43	0.26906	32.43	32.321	32.59	0					10	5	3	0	0	0	0.099922	1	12238	12238		79.451	31.491	1	169260			6868	6008	3580	3607	7021	7021	253				-0.06487066705221878
CSAWRRCHACS	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))SAWRRCHAC(Carbamidomethyl (C))S_	C(0.945)SAWRRC(0.07)HAC(0.985)S		C(12)SAWRRC(-12)HAC(18)S		0	2	0		ENST00000565644.5_1_16:87863759-87863915:-|nuORF	ENST00000565644.5_1_16:87863759-87863915:-|nuORF	ENST00000565644.5_1_16:87863759-87863915:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	697.2879638671875	2	697.287165	1392.55978	1.4098	0.00098307	-0.79373	-0.00055346	0.61612	0.00042961	697.2867933176897	15.519	0.138	15.519	15.443	15.581	0					6	4	2	0	0	0	0.53842	1	3561	3561		41.427	8.6142	3	338140			6869	10753	3581	3608	7022	7022	435;436				-0.12080066294356584
CSEHCEEAYRV	11	Unmodified	_CSEHCEEAYRV_					0	0	0		USHBP1|p.Y348C|1|0.18|ENSG00000130307|chr19:17259292-17259292|T/C|missense_variant	USHBP1|p.Y348C|1|0.18|ENSG00000130307|chr19:17259292-17259292|T/C|missense_variant	USHBP1|p.Y348C|1|0.18|ENSG00000130307|chr19:17259292-17259292|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	663.2657470703125	2	663.266087	1324.51762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.783	1	12.783	12.283	13.283	0								0	0	0	0.45674	1	2451	2451		12.812	2.5465	1				6870	23095	3582	3609	7023	7023					-0.1316576322178662
CSGGLFFF	8	Unmodified	_CSGGLFFF_					0	0	0			REV__ENST00000315366.7_1_4:114900139-114900319:-|nuORF	REV__ENST00000315366.7_1_4:114900139-114900319:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.1988220214844	2	439.199282	876.384011	0.2689	0.0001181	-1.191	-0.00052309	-0.9221	-0.00040499	439.19877761688605	20.746	0.64883	20.746	20.459	21.108	0					32	20	2	0	0	0	0.59916	1	5555	5555		49.211	3.2385	1	174730	+		6871	18297	3583	3610	7024	7024					-0.05912589474507968
CSGKAEHSG	9	Unmodified	_CSGKAEHSG_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.18707275390625	2	438.187434	874.360315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.325	1	46.325	45.825	46.825	0								0	0	0	0.36266	1	18540	18540		21.96	2.5999	1		+		6872	16599	3584	3611	7025	7025					-0.08189054978981858
CSGNKCNQA	9	Unmodified	_CSGNKCNQA_					0	0	0			REV__ENSG00000198960|ENST00000361910|ARMCX6	REV__ENSG00000198960|ENST00000361910|ARMCX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.6902770996094	2	462.686744	923.358935	4.1616	0.0019255	2.0483	0.00094773	6.2099	0.0028732	462.688231066312	19.195	0.79965	19.195	19.093	19.892	0					58	25	5	0	0	0	0.47038	1	5301	5301		35.618	3.6634	1	3176000	+		6873	17453	3585	3612	7026	7026					-0.10581012339400786
CSHSGDYFSQ	10	Unmodified	_CSHSGDYFSQ_					0	0	0			REV__nc|ENSG00000099810|Q13126-7|MTAP	REV__nc|ENSG00000099810|Q13126-7|MTAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.70947265625	2	565.714013	1129.41347	0.29844	0.00016883	-3.5252	-0.0019943	-3.2268	-0.0018254	565.7127237339196	12.469	0.42276	12.469	12.237	12.659	0					17	14	2	0	0	0	0.70877	1	2637	2637		20.947	0	1	414170	+		6874	13498	3586	3613	7027	7027					-0.14605721986981735
CSKLKVFLA	9	Unmodified	_CSKLKVFLA_					0	0	0			REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.86834716796875	3	336.868534	1007.58377	0.53407	0.00017991	-1.2313	-0.0004148	-0.69726	-0.00023489	336.8682980043498	43.034	0.41159	43.034	42.693	43.104	0					29	20	2	0	0	0	0.61124	1	16800	16800		14.137	0	1	79380	+		6875	12657	3587	3614	7028	7028					0.08028465473239521
CSKWYTKCNCT	11	Carbamidomethyl (C)	_CSKWYTKC(Carbamidomethyl (C))NCT_	CSKWYTKC(0.996)NC(0.004)T		C(-34)SKWYTKC(24)NC(-24)T		0	1	0			REV__ENSG00000102891|ENST00000219162|MT4	REV__ENSG00000102891|ENST00000219162|MT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	697.288330078125	2	697.288508	1392.56246	-2.0995	-0.001464	1.8542	0.0012929	-0.24526	-0.00017102	697.2901079632097	15.794	0.17154	15.794	15.726	15.897	0					8	4	2	0	0	0	0.38515	1	4149	4149		53.089	8.7118	3	1742500	+		6876	13652	3588	3615	7029	7029	521				-0.11811655680094191
CSKWYTKCNCT	11	Carbamidomethyl (C)	_CSKWYTKC(Carbamidomethyl (C))NCT_	CSKWYTKC(0.997)NC(0.003)T		C(-41)SKWYTKC(26)NC(-26)T		0	1	0			REV__ENSG00000102891|ENST00000219162|MT4	REV__ENSG00000102891|ENST00000219162|MT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	697.2879028320312	2	697.288508	1392.56246	-1.6554	-0.0011543	0.68918	0.00048055	-0.9662	-0.00067372	697.2892763638849	15.76	0.21258	15.76	15.652	15.864	0					12	4	4	0	0	0	0.32407	1	4362	4362		59.931	8.7381	3	2006600	+		6877	13652	3588	3615	7030	7030	521				-0.11811655680094191
CSLASPLVAV	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SLASPLVAV_	C(1)SLASPLVAV		C(65)SLASPLVAV		0	1	0		ENST00000269321.11_1_17:79826257-79826755:-|nuORF	ENST00000269321.11_1_17:79826257-79826755:-|nuORF	ENST00000269321.11_1_17:79826257-79826755:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.5210876464844	3	339.519682	1015.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.925	1	11.925	11.425	12.425	0								0	0	0	0.18965	1	2413	2413		65.465	10.743	1				6878	8376	3589	3616	7031	7031	365				0.03006980851307617
CSLTGIKE	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SLTGIKE_	C(1)SLTGIKE		C(64)SLTGIKE		0	1	0			REV__ENSG00000254685|ENST00000370898|FPGT	REV__ENSG00000254685|ENST00000370898|FPGT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.23095703125	2	454.23131	906.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.024	1	27.024	26.524	27.524	0								0	0	0	1.7419	1	8283	8283		64.207	9.4849	1		+		6879	17748	3590	3617	7032	7032	622				-0.00889854108208965
CSLTGIKE	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SLTGIKE_	C(1)SLTGIKE		C(66)SLTGIKE		0	1	0			REV__ENSG00000254685|ENST00000370898|FPGT	REV__ENSG00000254685|ENST00000370898|FPGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.23089599609375	2	454.23131	906.448068	-2.6246	-0.0011922	2.6053	0.0011834	-0.019239	-8.7388E-06	454.23246026150514	27.087	0.29118	27.087	27.003	27.294	0					10	7	2	0	0	0	0.43813	1	8803	8803		66.429	13.493	1	118540	+		6880	17748	3590	3617	7033	7033	622				-0.00889854108208965
CSNDDNGDDC	10	Unmodified	_CSNDDNGDDC_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.1458740234375	2	529.145303	1056.27605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.515	1	49.515	49.015	50.015	0								0	0	0	0.4201	1	18617	18617		2.9294	1.4646	1		+		6881	15258	3591	3618	7034	7034					-0.2498341864870781
CSPLYLPVL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SPLYLPVL_	C(1)SPLYLPVL		C(52)SPLYLPVL		0	1	0		ENST00000554169.1_1_14:95999360-96000279:-|nuORF	ENST00000554169.1_1_14:95999360-96000279:-|nuORF	ENST00000554169.1_1_14:95999360-96000279:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2874145507812	2	531.288628	1060.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.998	1	39.998	39.498	40.498	0								0	0	0	0.19085	1	15240	15240		52.299	7.922	1				6882	10644	3592	3619	7035	7035	433				0.034844553737229944
CSQAWGAVVGA	11	Unmodified	_CSQAWGAVVGA_					0	0	0		ENST00000279394.7_1_16:30003318-30003555:+|nuORF	ENST00000279394.7_1_16:30003318-30003555:+|nuORF	ENST00000279394.7_1_16:30003318-30003555:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7484741210938	2	524.747659	1047.48076	0.42277	0.00022185	1.2539	0.00065796	1.6766	0.0008798	524.7482877350602	17.97	0.20968	17.97	17.855	18.064	0					10	5	3	0	0	0	0.5473	1	4610	4610		40.778	4.3314	1	491880			6883	8405	3593	3620	7036	7036					-0.0410764698535786
CSQYTEKNLG	10	Unmodified	_CSQYTEKNLG_					0	0	0			REV__ENST00000569239.5_1_16:46723617-46727095:+|nuORF	REV__ENST00000569239.5_1_16:46723617-46727095:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.7631225585938	2	571.760963	1141.50737	1.0972	0.00062733	2.5006	0.0014298	3.5978	0.0020571	571.7626744203761	13.12	0.073756	13.12	13.08	13.154	0					9	4	3	0	0	0	0.31613	1	2557	2557		65.465	8.7443	1	103950	+		6884	13446	3594	3621	7037	7037					-0.05772002884691574
CSRMYQKY	8	Oxidation (M)	_CSRM(Oxidation (M))YQKY_		CSRM(1)YQKY		CSRM(59)YQKY	0	0	1		ENST00000570495.5_1_16:68596961-68597039:+|nuORF	ENST00000570495.5_1_16:68596961-68597039:+|nuORF	ENST00000570495.5_1_16:68596961-68597039:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.7398071289062	2	547.741519	1093.46849	0.46716	0.00025588	-2.65	-0.0014515	-2.1828	-0.0011956	547.739991197446	35.862	0.16263	35.862	35.779	35.942	0					7	4	2	0	0	0	0.51384	1	13470	13470		58.782	21.623	1	248980			6885	10797	3595	3622	7038	7038		425			-0.07451006720043551
CSRNVTRRLK	10	Unmodified	_CSRNVTRRLK_					0	0	0		ENST00000493053.5_1_10:7830135-7848940:+|nuORF	ENST00000493053.5_1_10:7830135-7848940:+|nuORF	ENST00000493053.5_1_10:7830135-7848940:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	616.8515625	2	616.853855	1231.69316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.856	1	12.856	12.356	13.356	0								0	0	0	0.4201	1	2841	2841		9.1829	5.7729	1				6886	10086	3596	3623	7039	7039					0.0865786414528884
CSSDWAKPVF	10	Unmodified	_CSSDWAKPVF_					0	0	0		nc|ENSG00000143194|Q96JY0-2|MAEL	nc|ENSG00000143194|Q96JY0-2|MAEL	nc|ENSG00000143194|Q96JY0-2|MAEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.2616577148438	2	570.263142	1138.51173	-1.356	-0.0007733	-1.7489	-0.00099731	-3.1049	-0.0017706	570.2619839669259	29.89	0.13539	29.89	29.794	29.929	0					10	4	3	0	0	0	0.44292	1	10106	10106		39.253	0	1	117890			6887	11560	3597	3624	7040	7040					-0.05198493671127835
CSSGATRAYAA	11	Unmodified	_CSSGATRAYAA_					0	0	0			REV__CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant	REV__CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2423706054688	2	529.240198	1056.46584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.193	1	32.193	31.693	32.693	0								0	0	0	0.43542	1	11169	11169		29.17	2.4771	1		+		6888	12453	3598	3625	7041	7041					-0.060131388533591235
CSSLMLIE	8	Unmodified	_CSSLMLIE_					0	0	0		PLEKHG3|p.P557Qfs*19|1|0.1|ENSG00000126822|chr14:64741182-64741182|C/-|frameshift_variant;nc|ENSG00000126822|A1L390-3|PLEKHG3;ENSG00000126822|ENST00000247226|PLEKHG3	PLEKHG3|p.P557Qfs*19|1|0.1|ENSG00000126822|chr14:64741182-64741182|C/-|frameshift_variant	PLEKHG3|p.P557Qfs*19|1|0.1|ENSG00000126822|chr14:64741182-64741182|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2167663574219	2	448.216814	894.419076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.432	1	15.432	14.932	15.932	0								0	0	0	1.7419	1	4066	4066		33.516	0	1				6889	3491	3599	3626	7042	7042					-0.032357147288507804
CSSNNNIARIT	11	Unmodified	_CSSNNNIARIT_					0	0	0		nc|ENSG00000114026|O15527-7|OGG1;ENST00000432857.2_1_3:9792686-9793638:+|nuORF;nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-7|OGG1	nc|ENSG00000114026|O15527-7|OGG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.7921752929688	2	596.790586	1191.56662	3.1658	0.0018893	-0.56477	-0.00033705	2.6011	0.0015523	596.7904095799005	37.635	0.63937	37.635	37.383	38.022	0					45	13	5	0	0	0	0.37057	1	14695	14695		54.722	6.1208	1	5146100			6890	11487	3600	3627	7043	7043					-0.02150106870521995
CSYQGALSR	9	Unmodified	_CSYQGALSR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.73175048828125	2	492.732009	983.449465	-0.071904	-3.5429E-05	-0.6752	-0.00033269	-0.7471	-0.00036812	492.73175710962005	28.404	0.24678	28.404	28.33	28.577	0					23	9	3	0	0	0	0.048471	1	8873	8873		95.815	10.456	1	453480	+		6891	15602;22247	3601	3628	7044	7044					-0.04292220019465276
CSYQGALSR	9	Unmodified	_CSYQGALSR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.73162841796875	2	492.732009	983.449465	-0.52578	-0.00025907	-0.15856	-7.8127E-05	-0.68434	-0.00033719	492.7320514190434	28.678	0.21577	28.678	28.591	28.807	0					19	5	4	0	0	0	0.048471	1	10149	10149		95.815	1.8087	1	3013600	+		6892	15602;22247	3601	3628	7045	7045					-0.04292220019465276
CSYQGALSR	9	Unmodified	_CSYQGALSR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.73223876953125	2	492.732009	983.449465	-1.2658	-0.00062371	2.193	0.0010806	0.92718	0.00045685	492.73315678521516	28.465	0.23388	28.465	28.347	28.581	0					20	8	3	0	0	0	0.11898	1	9153	9153		75.043	0.78827	1	577010	+		6893	15602;22247	3601	3628	7046	7046					-0.04292220019465276
CSYQGALSR	9	Unmodified	_CSYQGALSR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7322082519531	2	492.732009	983.449465	0.60457	0.00029789	-1.0133	-0.0004993	-0.40876	-0.00020141	492.7315643160263	28.72	0.26436	28.72	28.565	28.829	0					17	5	4	0	0	0	0.032052	1	10541	10541		107.01	24.767	1	3432600	+		6894	15602;22247	3601	3628	7047	7047					-0.04292220019465276
CSYQGALSR	9	Unmodified	_CSYQGALSR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7317810058594	2	492.732009	983.449465	-0.013061	-6.4357E-06	-0.46709	-0.00023015	-0.48015	-0.00023658	492.73188674414155	28.481	0.20908	28.481	28.403	28.613	0					13	5	3	0	0	0	0.032052	1	9452	9452		107.01	24.767	1	473100	+		6895	15602;22247	3601	3628	7048	7048					-0.04292220019465276
CSYQGALSR	9	Unmodified	_CSYQGALSR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7320556640625	2	492.732009	983.449465	-2.6151	-0.0012886	1.7675	0.0008709	-0.84764	-0.00041766	492.7330428770915	28.497	0.42262	28.497	28.176	28.599	0					22	10	4	0	0	0	0.048471	1	9460	9460		95.815	19.041	1	679320	+		6896	15602;22247	3601	3628	7049	7049					-0.04292220019465276
CSYQGALSR	9	Unmodified	_CSYQGALSR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.73199462890625	2	492.732009	983.449465	0.85197	0.00041979	-1.0195	-0.00050232	-0.16749	-8.2529E-05	492.7315464810505	28.649	0.26782	28.649	28.542	28.809	0					18	5	4	0	0	0	0.010494	1	10391	10391		139.97	35.224	1	3817600	+		6897	15602;22247	3601	3628	7050	7050					-0.04292220019465276
CSYSGKSKWD	10	Unmodified	_CSYSGKSKWD_					0	0	0			REV__CON__Q1RMN8	REV__CON__Q1RMN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.757568359375	2	580.755681	1159.49681	0.57212	0.00033226	2.1631	0.0012562	2.7352	0.0015885	580.7573439188342	29.464	0.28704	29.464	29.379	29.666	0					18	7	4	0	0	0	0.41335	1	9924	9924		54.776	1.4249	1	555700	+	+	6898	12604	3602	3629	7051	7051					-0.07655985539122412
CTAGFFVSL	9	Unmodified	_CTAGFFVSL_					0	0	0		OR10X1|p.I171V|1|0.28|ENSG00000279111|chr1:158579389-158579389|T/C|missense_variant	OR10X1|p.I171V|1|0.28|ENSG00000279111|chr1:158579389-158579389|T/C|missense_variant	OR10X1|p.I171V|1|0.28|ENSG00000279111|chr1:158579389-158579389|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7327575683594	2	472.730946	943.447339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.021	1	23.021	22.521	23.521	0								0	0	0	0.1836	1	6601	6601		53.351	1.0523	1				6899	11874	3603	3630	7052	7052					-0.0266464875727479
CTFAMRYGD	9	Unmodified	_CTFAMRYGD_					0	0	0			REV__nc|ENSG00000162664|Q5BKZ1-3|ZNF326	REV__nc|ENSG00000162664|Q5BKZ1-3|ZNF326	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2203369140625	2	532.22042	1062.42629	0.38151	0.00020305	-0.84781	-0.00045122	-0.4663	-0.00024818	532.721195940866	12.963	0.053458	12.963	12.912	12.965	0					6	2	3	0	0	0	0.61124	1	2500	2500		15.642	1.8665	1	163100	+		6900	15828	3604	3631	7053	7053					-0.10242982128420408
CTGGNACARGA	11	Unmodified	_CTGGNACARGA_					0	0	0			REV__ENSG00000090932|ENST00000356433|DLL3	REV__ENSG00000090932|ENST00000356433|DLL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.70697021484375	2	490.705468	979.396383	2.6727	0.0013115	0.20263	9.943E-05	2.8754	0.001411	490.70560954086807	18.971	0.51428	18.971	18.863	19.378	0					21	10	3	0	0	0	0.62108	1	5791	5791		35.152	1.6364	1	1286500	+		6901	13433	3605	3632	7054	7054					-0.09413921073780784
CTGNPWLDMFL	11	Unmodified	_CTGNPWLDMFL_					0	0	0			REV__ENST00000319357.5_1_7:43664482-43664539:+|nuORF	REV__ENST00000319357.5_1_7:43664482-43664539:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	648.789794921875	2	648.791209	1295.56787	-0.69004	-0.00044769	-2.5905	-0.0016807	-3.2805	-0.0021284	648.7896345041484	30.849	0.1766	30.849	30.758	30.935	0					8	4	3	0	0	0	0.51875	1	11582	11582		42.864	5.0528	1	106040	+		6902	18321	3606	3633	7055	7055					-0.0680960882598356
CTHTSFLL	8	Unmodified	_CTHTSFLL_					0	0	0			REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.22735595703125	2	461.228571	920.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.726	1	12.726	12.226	13.226	0								0	0	0	1.7419	1	2934	2934		20.482	1.1219	1		+		6903	18796	3607	3634	7056	7056					-0.020815329000242855
CTKSAHTK	8	Unmodified	_CTKSAHTK_					0	0	0			REV__ESYT3|p.T499A|1|0.38|ENSG00000158220|chr3:138469496-138469496|A/G|missense_variant	REV__ESYT3|p.T499A|1|0.38|ENSG00000158220|chr3:138469496-138469496|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2234191894531	2	438.22382	874.433086	0.85458	0.0003745	-1.0203	-0.00044711	-0.1657	-7.2615E-05	438.22333399009756	18.079	0.28735	18.079	17.89	18.178	0					14	8	2	0	0	0	0.68432	1	4408	4408		35.618	1.4457	1	115260	+		6904	20647	3608	3635	7057	7057					-0.009153011855460136
CTLHPLWG	8	Unmodified	_CTLHPLWG_					0	0	0		PRIMA1|p.A22T|1|0.31|ENSG00000175785|chr14:93787655-93787655|C/T|missense_variant	PRIMA1|p.A22T|1|0.31|ENSG00000175785|chr14:93787655-93787655|C/T|missense_variant	PRIMA1|p.A22T|1|0.31|ENSG00000175785|chr14:93787655-93787655|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.73211669921875	2	463.73128	925.448008	2.5918	0.0012019	-0.46166	-0.00021409	2.1301	0.0009878	463.7309969512906	33.571	0.2183	33.571	33.415	33.633	0					10	4	3	0	0	0	0.67475	1	12764	12764		37.028	37.028	1	520330			6905	11970	3609	3636	7058	7058					-0.01769809317556792
CTLRKHKTN	9	Unmodified	_CTLRKHKTN_					0	0	0		ENSG00000163132|ENST00000382723|MSX1;ENSG00000120149|ENST00000239243|MSX2	ENSG00000163132|ENST00000382723|MSX1	ENSG00000163132|ENST00000382723|MSX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8052368164062	2	550.8033	1099.59205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.509	1	27.509	27.009	28.009	0								0	0	0	0.18645	1	8486	8486		52.937	3.4007	1				6906	5531	3610	3637	7059	7059					0.04623412442583685
CTLSFCIYKH	10	Unmodified	_CTLSFCIYKH_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	607.7861938476562	2	607.788469	1213.56239	0.15423	9.3738E-05	-3.613	-0.002196	-3.4588	-0.0021022	607.786089074944	24.701	0.18952	24.701	24.605	24.795	0					8	5	2	0	0	0	0.66185	1	7343	7343		26.693	3.1702	1	50583			6907	5047	3611	3638	7060	7060					-0.03585287617784161
CTSDYDKPEPS	11	Unmodified	_CTSDYDKPEPS_					0	0	0			REV__ENSG00000111911|ENST00000229633|HINT3	REV__ENSG00000111911|ENST00000229633|HINT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	621.2520141601562	2	621.253168	1240.49178	-0.67969	-0.00042226	-1.8575	-0.001154	-2.5372	-0.0015762	621.251920468699	35.256	0.10253	35.256	35.19	35.293	0					7	4	2	0	0	0	0.68304	1	11923	11923		32.751	7.1765	1	51550	+		6908	13986	3612	3639	7061	7061					-0.11884334192404822
CTSGRHRVL	9	Unmodified	_CTSGRHRVL_					0	0	0		ENST00000523752.5_1_8:22877945-22878461:-|nuORF	ENST00000523752.5_1_8:22877945-22878461:-|nuORF	ENST00000523752.5_1_8:22877945-22878461:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.77392578125	2	514.774542	1027.53453	-1.5832	-0.00081497	0.71315	0.00036711	-0.87	-0.00044786	514.7748856625974	35.493	0.25536	35.493	35.432	35.688	0					19	10	3	0	0	0	0.39215	1	12653	12653		42.396	42.396	1	283630			6909	10337	3613	3640	7062	7062					0.021865702370178042
CTSWFEGV	8	Unmodified	_CTSWFEGV_					0	0	0			REV__ENST00000419296.1_1_2:110752028-110752415:+|nuORF	REV__ENST00000419296.1_1_2:110752028-110752415:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	310.1336975097656	3	310.133828	927.379654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.679	1	49.679	49.179	50.179	0								0	0	0	1.7419	1	17925	17925		17.365	0.89182	1		+		6910	19058	3614	3641	7063	7063					-0.08694098688056329
CTVCSLGV	8	Unmodified	_CTVCSLGV_					0	0	0			REV__CIITA|p.R884C|1|0.29|ENSG00000179583|chr16:10908142-10908142|C/T|missense_variant	REV__CIITA|p.R884C|1|0.29|ENSG00000179583|chr16:10908142-10908142|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.1822814941406	2	391.182774	780.350996	0.43534	0.0001703	-1.8744	-0.00073323	-1.4391	-0.00056293	391.1821471309493	17.293	0.85583	17.293	17.183	18.038	0					44	17	5	0	0	0	0.74117	1	5280	5280		28.254	0	1	25755000	+		6911	12502	3615	3642	7064	7064					-0.04796539588858195
CVAALPVNL	9	Unmodified	_CVAALPVNL_					0	0	0		ENST00000416301.5_1_10:97849055-97849924:-|nuORF	ENST00000416301.5_1_10:97849055-97849924:-|nuORF	ENST00000416301.5_1_10:97849055-97849924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2539367675781	2	450.254588	898.494624	0.17205	7.7468E-05	-0.9871	-0.00044444	-0.81504	-0.00036698	450.25416122519147	25.207	0.24498	25.207	25.03	25.275	0					8	5	2	0	0	0	0.43426	1	8558	8558		38.806	1.647	1	45418			6912	9360	3616	3643	7065	7065					0.04131630513722939
CVAKVLMKK	9	Oxidation (M)	_CVAKVLM(Oxidation (M))KK_		CVAKVLM(1)KK		CVAKVLM(46)KK	0	0	1			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.87335205078125	3	345.873291	1034.59804	0.68666	0.0002375	-0.4566	-0.00015793	0.23006	7.9573E-05	345.8731187895522	17.582	0.2887	17.582	17.499	17.788	0					13	7	3	0	0	0	0.35021	1	4997	4997		45.972	8.1607	1	2119700	+		6913	17841	3617	3644	7066	7066		667			0.08212794629912423
CVCDRIKGA	9	Unmodified	_CVCDRIKGA_					0	0	0		ENST00000407959.1_1_6:5788581-5788740:-|nuORF	ENST00000407959.1_1_6:5788581-5788740:-|nuORF	ENST00000407959.1_1_6:5788581-5788740:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7400207519531	2	482.73878	963.463006	0.57446	0.00027732	1.2594	0.00060798	1.8339	0.0008853	482.73942450281083	28.449	0.16817	28.449	28.33	28.498	0					6	4	2	0	0	0	0.1115	1	10065	10065		76.774	10.971	1	332020			6914	9288	3618	3645	7067	7067					-0.020186855118822677
CVCWRIAF	8	Carbamidomethyl (C)	_CVC(Carbamidomethyl (C))WRIAF_	C(0.158)VC(0.842)WRIAF		C(-7.3)VC(7.3)WRIAF		0	1	0			REV__ENST00000556036.5_2_14:45605535-45605673:+|nuORF	REV__ENST00000556036.5_2_14:45605535-45605673:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7528076171875	2	527.75169	1053.48883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.408	1	32.408	31.908	32.908	0								0	0	0	1.7419	1	10476	10476		42.474	7.2737	2		+		6915	20249	3619	3646	7068	7068	714				-0.035777912695948544
CVFRHLVCF	9	Unmodified	_CVFRHLVCF_					0	0	0			REV__ENST00000445957.2_1_1:190424055-190443630:-|nuORF	REV__ENST00000445957.2_1_1:190424055-190443630:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.281982421875	2	562.280615	1122.54668	1.7798	0.0010007	0.22789	0.00012814	2.0077	0.0011289	562.2807912277906	37.789	0.39709	37.789	37.642	38.039	0					15	8	3	0	0	0	0.57706	1	14795	14795		24.203	0	1	270700	+		6916	19276	3620	3647	7069	7069					-0.009695293441836839
CVGCRYPRQ	9	Unmodified	_CVGCRYPRQ_					0	0	0			REV__ENSG00000261221|ENST00000568956|ZNF865	REV__ENSG00000261221|ENST00000568956|ZNF865	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.29931640625	2	541.255128	1080.4957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.146	1	21.146	20.646	21.646	0								0	0	0	0.32356	1	5777	5777		30.504	2.6214	1		+		6917	17778	3621	3648	7070	7070					-0.04132478389033167
CVGLWALR	8	Unmodified	_CVGLWALR_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.255615234375	2	459.254923	916.495293	-0.42215	-0.00019388	2.4667	0.0011328	2.0445	0.00093897	459.25580412774167	28.523	0.14127	28.523	28.459	28.6	0					10	6	2	0	0	0	0.6282	1	8932	8932		44.531	7.5026	1	82991			6918	1020	3622	3649	7071	7071					0.0337046995343826
CVGPLPCMLLL	11	Unmodified	_CVGPLPCMLLL_					0	0	0		ENST00000438378.2_1_2:132275414-132277996:+|nuORF	ENST00000438378.2_1_2:132275414-132277996:+|nuORF	ENST00000438378.2_1_2:132275414-132277996:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.8094482421875	2	579.807816	1157.60108	1.5729	0.00091196	0.57147	0.00033134	2.1443	0.0012433	579.8083302330285	23.504	0.26724	23.504	23.344	23.612	0					17	5	5	0	0	0	0.32083	1	8121	8121		60.294	16.177	1	888260			6919	9547	3623	3650	7072	7072					0.028583016923903415
CVHGWPALL	9	Unmodified	_CVHGWPALL_					0	0	0		ENST00000504398.1_1_5:28809070-28809244:-|nuORF	ENST00000504398.1_1_5:28809070-28809244:-|nuORF	ENST00000504398.1_1_5:28809070-28809244:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2613830566406	2	498.260205	994.505857	2.9156	0.0014527	-0.69202	-0.00034481	2.2236	0.0011079	498.2598114972185	33.454	0.3167	33.454	33.317	33.633	0					18	6	4	0	0	0	0.43174	1	12742	12742		39.021	39.021	1	830720			6920	10171	3624	3651	7073	7073					0.008384526078657473
CVKEGDPGLLF	11	Unmodified	_CVKEGDPGLLF_					0	0	0			REV__nc|ENSG00000182329|Q0VF49|KIAA2012	REV__nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.7960205078125	2	589.299724	1176.5849	-1.7637	-0.0010393	-1.8406	-0.0010847	-3.6042	-0.002124	589.298996958642	28.961	0.76432	28.961	28.737	29.502	0					49	19	3	0	0	0	0.70609	1	9614	9614		27.047	3.5246	1	250640	+		6921	16878	3625	3652	7074	7074					0.003666350515004524
CVKEIKRLK	9	Unmodified	_CVKEIKRLK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.90435791015625	3	372.902238	1115.68488	3.2195	0.0012005	2.1077	0.00078596	5.3271	0.0019865	372.90294049255095	29.481	0.25821	29.481	29.375	29.633	0					12	5	3	0	0	0	0.54081	1	10817	10817		28.081	4.5588	1	309910			6922	2200	3626	3653	7075	7075					0.1316691717595404
CVKLAGATHYP	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))VKLAGATHYP_	C(1)VKLAGATHYP		C(93)VKLAGATHYP		0	1	0		ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	608.8121337890625	2	608.81079	1215.60703	2.9229	0.0017795	-0.65045	-0.000396	2.2724	0.0013835	608.8103232897407	30.655	0.26977	30.655	30.545	30.814	0					14	5	4	0	0	0	0.085907	1	11388	11388		93.143	7.2814	1	819570			6923	7906	3627	3654	7076	7076	343				0.007848595199220654
CVLARTQI	8	Unmodified	_CVLARTQI_					0	0	0		ENSG00000173762|ENST00000312648|CD7	ENSG00000173762|ENST00000312648|CD7	ENSG00000173762|ENST00000312648|CD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2602233886719	2	452.257662	902.500772	2.5231	0.0011411	2.5642	0.0011597	5.0873	0.0023008	452.25868227861315	30.317	0.39808	30.317	30.214	30.612	0					13	8	3	0	0	0	0.24777	1	11220	11220		105.27	11.262	1	2005000			6924	6449	3628	3655	7077	7077					0.04562148745264949
CVLRPRGI	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))VLRPRGI_	C(1)VLRPRGI		C(58)VLRPRGI		0	1	0		KCNH1|p.F216Lfs*10|1|0.35|ENSG00000143473|chr1:211019167-211019167|A/-|frameshift_variant	KCNH1|p.F216Lfs*10|1|0.35|ENSG00000143473|chr1:211019167-211019167|A/-|frameshift_variant	KCNH1|p.F216Lfs*10|1|0.35|ENSG00000143473|chr1:211019167-211019167|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7869567871094	2	485.784379	969.554204	2.4997	0.0012143	3.0403	0.0014769	5.54	0.0026913	485.78586243155735	33.373	0.21728	33.373	33.266	33.483	0					7	4	2	0	0	0	0.52345	1	12694	12694		57.811	57.811	1	439210			6925	11245	3629	3656	7078	7078	449				0.0682094624776255
CVLVRARA	8	Unmodified	_CVLVRARA_					0	0	0			REV__TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	REV__TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.26641845703125	2	444.265822	886.517091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.932	1	44.932	44.432	45.432	0								0	0	0	1.7419	1	18000	18000		44.531	9.3304	1		+		6926	15820	3630	3657	7079	7079					0.06929274701997201
CVNLFLLSAQS	11	Unmodified	_CVNLFLLSAQS_					0	0	0			REV__ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant	REV__ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	398.8785400390625	3	398.877758	1193.61144	0.59347	0.00023672	2.0841	0.0008313	2.6776	0.001068	398.8785692234132	28.093	0.11164	28.093	28.017	28.129	0					6	4	2	0	0	0	0.77537	1	8741	8741		20.315	2.0529	1	54733	+		6927	12154	3631	3658	7080	7080					0.022383239428108936
CVPAARPAPG	10	Unmodified	_CVPAARPAPG_					0	0	0		ENST00000605946.1_1_10:31608461-31608611:-|nuORF	ENST00000605946.1_1_10:31608461-31608611:-|nuORF	ENST00000605946.1_1_10:31608461-31608611:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2481689453125	2	469.747462	937.480371	0.19374	9.1008E-05	3.6804	0.0017289	3.8741	0.0018199	469.75043622397595	22.848	0.33681	22.848	22.726	23.063	0					21	8	4	0	0	0	0.61887	1	7474	7474		31.955	4.0726	1	1365400			6928	11076	3632	3659	7081	7081					0.009129780854323144
CVPGASFYIGL	11	Unmodified	_CVPGASFYIGL_					0	0	0		ENST00000458502.2_1_17:20744565-20744838:+|nuORF	ENST00000458502.2_1_17:20744565-20744838:+|nuORF	ENST00000458502.2_1_17:20744565-20744838:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7848510742188	2	563.78371	1125.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.896	1	37.896	37.396	38.396	0								0	0	0	0.36993	1	14395	14395		42.396	0	1				6929	9711	3633	3660	7082	7082					-0.004887326316520557
CVPNEGIGKV	10	Unmodified	_CVPNEGIGKV_					0	0	0			REV__ENST00000455605.2_1_6:43488011-43488227:+|nuORF	REV__ENST00000455605.2_1_6:43488011-43488227:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.267578125	2	508.265684	1014.51682	3.8589	0.0019613	-0.14172	-7.2033E-05	3.7172	0.0018893	508.2655748548977	16.061	0.13056	16.061	15.987	16.118	0					11	4	3	0	0	0	0.41335	1	3772	3772		54.776	12.38	1	292060	+		6930	19343	3634	3661	7083	7083					0.010138101915117659
CVPTRKAQL	9	Unmodified	_CVPTRKAQL_					0	0	0		nc|ENSG00000112576|P30281-2|CCND3;ENSG00000112576|ENST00000372991|CCND3;ENST00000505672.5_1_6:41904922-42016364:-|nuORF	nc|ENSG00000112576|P30281-2|CCND3	nc|ENSG00000112576|P30281-2|CCND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2923583984375	2	508.289494	1014.56443	2.9719	0.0015106	1.202	0.00061095	4.1738	0.0021215	508.2893014669664	20.37	0.36419	20.37	20.311	20.675	0					16	7	4	0	0	0	0.17854	1	6471	6471		64.207	3.2353	1	1155300			6931	2747	3635	3662	7084	7084					0.05773509182336056
CVPVCCAQQY	10	Unmodified	_CVPVCCAQQY_					0	0	0			REV__ENSG00000243489|ENST00000334670|KRTAP10-11	REV__ENSG00000243489|ENST00000334670|KRTAP10-11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.2299194335938	2	557.22993	1112.44531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.003	1	20.003	19.503	20.503	0								0	0	0	0.40002	1	5544	5544		30.504	4.9296	1		+	+	6932	17702	3636	3663	7085	7085					-0.10641768829032117
CVQNQVPPGW	10	Unmodified	_CVQNQVPPGW_					0	0	0			REV__ENST00000480011.5_1_7:156447331-156451185:+|nuORF	REV__ENST00000480011.5_1_7:156447331-156451185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2714233398438	2	564.268758	1126.52296	1.8896	0.0010662	3.6789	0.0020759	5.5685	0.0031421	564.7718446909761	40.598	0.26628	40.598	40.495	40.761	0					15	11	2	0	0	0	0.59277	1	15995	15995		30.504	0	1	50739	+		6933	19583	3637	3664	7086	7086					-0.035236715769769944
CVQRNNNK	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))VQRNNNK_	C(1)VQRNNNK		C(100)VQRNNNK		0	1	0			REV__ENSG00000107562|ENST00000343575|CXCL12	REV__ENSG00000107562|ENST00000343575|CXCL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7557983398438	2	516.753807	1031.49306	0.039603	2.0465E-05	3.5771	0.0018485	3.6167	0.0018689	516.755552948564	29.52	0.3006	29.52	29.394	29.694	0					13	7	2	0	0	0	0.25001	1	10563	10563		101.21	16.051	1	345430	+		6934	13855	3638	3665	7087	7087	526				-0.021426105223326886
CVQTNPTL	8	Unmodified	_CVQTNPTL_					0	0	0			REV__ENST00000370071.6_1_1:107690813-107690984:+|nuORF	REV__ENST00000370071.6_1_1:107690813-107690984:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2181701660156	2	438.218203	874.421853	-0.96075	-0.00042102	0.65164	0.00028556	-0.30911	-0.00013546	438.21856372159874	36.343	0.15794	36.343	36.26	36.418	0					14	8	2	0	0	0	0.5535	1	12303	12303		54.776	3.4409	1	129840	+		6935	18630	3639	3666	7088	7088					-0.020381232796808035
CVRCKFAKE	9	Unmodified	_CVRCKFAKE_					0	0	0			REV__ZNF445|p.K976Sfs*50|1|0.19|ENSG00000185219|chr3:44446744-44446744|T/-|frameshift_variant	REV__ZNF445|p.K976Sfs*50|1|0.19|ENSG00000185219|chr3:44446744-44446744|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.8524169921875	3	361.852778	1082.53651	-2.0487	-0.00074132	0.97305	0.0003521	-1.0756	-0.00038922	361.8531602435114	15.435	0.10387	15.435	15.367	15.471	0					8	3	3	0	0	0	0.51991	1	3455	3455		24.232	24.232	1	295690	+		6936	17012	3640	3667	7089	7089					-0.001461370693959907
CVRLLQFK	8	Unmodified	_CVRLLQFK_					0	0	0			REV__nc|ENSG00000257127|Q5K131|CLLU1	REV__nc|ENSG00000257127|Q5K131|CLLU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53460693359375	3	336.200395	1005.57936	0.53512	0.00017991	2.8485	0.00095767	3.3836	0.0011376	336.2023385033146	27.289	1.4297	27.289	26.845	28.275	0					49	29	3	0	0	0	0.8006	1	9955	9955		16.473	0	1	703170	+		6937	21236	3641	3668	7090	7090					0.07679001050348688
CVRNYEKF	8	Unmodified	_CVRNYEKF_					0	0	0			REV__ENST00000463003.1_1_13:115086670-115089303:+|nuORF	REV__ENST00000463003.1_1_13:115086670-115089303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7590942382812	2	529.758027	1057.5015	3.4453	0.0018252	-0.80038	-0.00042401	2.6449	0.0014012	529.7576117121013	35.56	0.87015	35.56	35.245	36.115	0					35	17	4	0	0	0	0.54629	1	13725	13725		55.504	2.1528	1	1632200	+		6938	18567	3642	3669	7091	7091					-0.02495056605721402
CVSTLGSNVL	10	Unmodified	_CVSTLGSNVL_					0	0	0			REV__nc|ENSG00000162711|Q96P20-2|NLRP3	REV__nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.25616455078125	2	496.757692	991.500831	-1.169	-0.0005807	0.5147	0.00025568	-0.65428	-0.00032502	496.75818135635376	34.697	0.52562	34.697	34.519	35.044	0					92	23	6	0	0	0	0.60281	1	11670	11670		33.922	1.1092	1	11646000	+		6939	15833	3643	3670	7092	7092					0.004741039546047432
CVTCETNEQT	10	Unmodified	_CVTCETNEQT_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.2237548828125	2	564.220814	1126.42707	0.36498	0.00020593	2.1238	0.0011983	2.4888	0.0014042	564.2236753036324	49.916	0.20969	49.916	49.837	50.046	0					27	8	4	0	0	0	0.67098	1	18018	18018		25.574	2.0514	1	250780	+		6940	14774	3644	3671	7093	7093					-0.13108232270064946
CVTVFLHH	8	Unmodified	_CVTVFLHH_					0	0	0		NUP43|p.N106H|1|0.15|ENSG00000120253|chr6:149743643-149743643|T/G|missense_variant;nc|ENSG00000120253|Q8NFH3-2|NUP43;NUP43|p.L312Ffs*4|1|0.21|ENSG00000120253|chr6:149727176-149727177|-/A|frameshift_variant;ENSG00000120253|ENST00000340413|NUP43	NUP43|p.N106H|1|0.15|ENSG00000120253|chr6:149743643-149743643|T/G|missense_variant	NUP43|p.N106H|1|0.15|ENSG00000120253|chr6:149743643-149743643|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2456970214844	2	478.244555	954.474557	2.2528	0.0010774	-0.078586	-3.7583E-05	2.1742	0.0010398	478.24467812557106	29.383	0.40658	29.383	29.274	29.681	0					22	8	4	0	0	0	0.55361	1	10768	10768		54.765	0	1	1463500			6941	3163	3645	3672	7094	7094					-0.004501204262396641
CVVIWVLP	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))VVIWVLP_	C(1)VVIWVLP		C(67)VVIWVLP		0	1	0			REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF	REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.78167724609375	2	493.280606	984.546659	-0.12505	-6.1683E-05	-1.9396	-0.00095676	-2.0646	-0.0010184	493.278591738209	31.312	0.20191	31.312	31.181	31.383	0					12	8	2	0	0	0	0.42924	1	10055	10055		67.327	6.9236	1	136370	+		6942	12040	3646	3673	7095	7095	477				0.05376793927496237
CVVKPNFAC	9	Unmodified	_CVVKPNFAC_					0	0	0			REV__NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	REV__NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7377624511719	2	490.738248	979.461943	-2.7572	-0.001353	1.1849	0.00058147	-1.5723	-0.00077158	490.7389284837969	33.772	0.3325	33.772	33.628	33.961	0					18	9	3	0	0	0	0.41354	1	11876	11876		40.573	3.4135	1	243040	+		6943	12867	3647	3674	7096	7096					-0.028608998807726493
CVYHGTLLG	9	Unmodified	_CVYHGTLLG_					0	0	0		MET|p.D1099G|1|0.23|ENSG00000105976|chr7:116777425-116777425|A/G|missense_variant	MET|p.D1099G|1|0.23|ENSG00000105976|chr7:116777425-116777425|A/G|missense_variant	MET|p.D1099G|1|0.23|ENSG00000105976|chr7:116777425-116777425|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7416687011719	2	481.741845	961.469137	-0.10484	-5.0504E-05	-0.4452	-0.00021447	-0.55004	-0.00026498	481.74183235989045	33.16	0.35319	33.16	33.02	33.373	0					22	8	4	0	0	0	0.30268	1	12717	12717		50.025	9.4519	1	351870			6944	11364	3648	3675	7097	7097					-0.013138440086777337
CWLLGKRW	8	Unmodified	_CWLLGKRW_					0	0	0			REV__ENST00000382172.3_1_13:24463460-24463493:-|nuORF	REV__ENST00000382172.3_1_13:24463460-24463493:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2882690429688	2	531.289297	1060.56404	0.2878	0.0001529	-2.6904	-0.0014294	-2.4026	-0.0012765	531.2880805437682	11.19	0.077381	11.19	11.15	11.228	0					4	2	2	0	0	0	0.78318	1	2248	2248		9.4706	0.64823	1	192250	+		6945	18793	3649	3676	7098	7098					0.03618134253156313
CWLLTVVLH	9	Unmodified	_CWLLTVVLH_					0	0	0		ITGA1|p.R24H|1|0.24|ENSG00000213949|chr5:52849374-52849374|G/A|missense_variant	ITGA1|p.R24H|1|0.24|ENSG00000213949|chr5:52849374-52849374|G/A|missense_variant	ITGA1|p.R24H|1|0.24|ENSG00000213949|chr5:52849374-52849374|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.3026733398438	2	542.304613	1082.59467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.162	1	25.162	24.662	25.662	0								0	0	0	0.30835	1	7959	7959		33.516	17.042	1				6946	11230	3650	3677	7099	7099					0.05667867847546404
CWSEEHCGRQ	10	Unmodified	_CWSEEHCGRQ_					0	0	0			REV__ENST00000445189.5_2_22:20878136-20891439:+|nuORF	REV__ENST00000445189.5_2_22:20878136-20891439:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	617.742431640625	2	617.740039	1233.46553	1.0929	0.00067513	1.0361	0.00064006	2.129	0.0013152	617.7406128353152	39.224	0.18445	39.224	39.127	39.311	0					10	6	2	0	0	0	0.62235	1	15414	15414		31.53	0	1	92126	+		6947	19271	3651	3678	7100	7100					-0.14186881844875643
CWSRSKRV	8	Unmodified	_CWSRSKRV_					0	0	0			REV__ENSG00000084731|ENST00000264712|KIF3C	REV__ENSG00000084731|ENST00000264712|KIF3C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2711486816406	2	511.271635	1020.52872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.699	1	15.699	15.199	16.199	0								0	0	0	1.7419	1	3626	3626		23.042	0.0057756	1		+		6948	13351	3652	3679	7101	7101					0.01927471725343821
CWSYGESYD	9	Unmodified	_CWSYGESYD_					0	0	0			REV__ENSG00000197921|ENST00000378453|HES5	REV__ENSG00000197921|ENST00000378453|HES5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.1979370117188	2	555.197664	1108.38078	0.5883	0.00032662	0.77781	0.00043184	1.3661	0.00075846	555.1979775826509	11.869	0.58713	11.869	11.766	12.353	0					48	20	5	0	0	0	0.61124	1	2361	2361		18.324	0.95945	1	1988900	+		6949	17366	3653	3680	7102	7102					-0.16907929109834186
CYFNLHDK	8	Unmodified	_CYFNLHDK_					0	0	0			REV__RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	REV__RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2356567382812	2	520.236927	1038.4593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.642	1	18.642	18.142	19.142	0								0	0	0	1.7419	1	5491	5491		35.201	1.0282	1		+		6950	14651	3654	3681	7103	7103					-0.05839032014114309
CYLAVVVSTE	10	Unmodified	_CYLAVVVSTE_					0	0	0			REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF	REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.275390625	2	542.273175	1082.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.542	1	25.542	25.042	26.042	0								0	0	0	0.4201	1	9079	9079		21.96	1.013	1		+		6951	20116	3655	3682	7104	7104					-0.006167427311766005
CYLSCVQVF	9	Unmodified	_CYLSCVQVF_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2437133789062	2	531.243363	1060.47217	0.38668	0.00020542	-0.33561	-0.00017829	0.051078	2.7135E-05	531.2431062831372	29.233	0.50454	29.233	29.116	29.62	0					43	17	4	0	0	0	0.20551	1	9181	9181		60.972	0.67798	1	2609300			6952	11293	3656	3683	7105	7105					-0.055643369462131886
CYLSCVQVF	9	Unmodified	_CYLSCVQVF_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2438354492188	2	531.243363	1060.47217	0.28776	0.00015287	-0.65337	-0.0003471	-0.3656	-0.00019422	531.242937696523	29.498	0.45093	29.498	29.35	29.801	0					17	9	3	0	0	0	0.20551	1	10917	10917		60.972	7.6205	1	689610			6953	11293	3656	3683	7106	7106					-0.055643369462131886
CYLSCVQVF	9	Unmodified	_CYLSCVQVF_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|87|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2431030273438	2	531.243363	1060.47217	-1.2365	-0.00065688	1.4275	0.00075833	0.19097	0.00010145	531.2440178003374	29.292	0.67967	29.292	29.159	29.839	0					39	17	4	0	0	0	0.087582	1	9821	9821		82.305	16.502	1	3942100			6954	11293	3656	3683	7107	7107					-0.055643369462131886
CYPSPLNYY	9	Unmodified	_CYPSPLNYY_					0	0	0		ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.2467651367188	2	560.244418	1118.47428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.372	1	30.372	29.872	30.872	0								0	0	0	0.31623	1	10334	10334		31.955	2.8053	1				6955	5640	3657	3684	7108	7108					-0.08021584936750514
CYRFKSGLT	9	Unmodified	_CYRFKSGLT_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7718505859375	2	537.773677	1073.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.972	1	11.972	11.472	12.472	0								0	0	0	0.39802	1	2436	2436		11.511	0	1		+		6956	13389	3658	3685	7109	7109					-0.0010248357161799504
DAAAAAAALGL	11	Unmodified	_DAAAAAAALGL_					0	0	0		ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7509460449219	2	457.750724	913.486896	0.051124	2.3402E-05	-0.34857	-0.00015956	-0.29745	-0.00013616	457.75071804234665	23.212	0.16255	23.212	23.107	23.27	0					8	4	2	0	0	0	0.50161	1	6685	6685		44.117	1.7207	1	84491			6957	3510	3659	3686	7110	7110					0.0266919451778449
DAAAEERPPD	10	Unmodified	_DAAAEERPPD_					0	0	0		ENST00000555759.1_1_14:95912279-95916550:-|nuORF	ENST00000555759.1_1_14:95912279-95916550:-|nuORF	ENST00000555759.1_1_14:95912279-95916550:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7412719726562	2	535.741085	1069.46762	1.822	0.00097614	-0.7896	-0.00042302	1.0324	0.00055312	535.7407749459694	31.035	0.29365	31.035	30.935	31.228	0					15	6	3	0	0	0	0.2978	1	11680	11680		67.494	7.3754	1	605830			6958	10661	3660	3687	7111	7111					-0.06433806563768485
DAAAEERPPD	10	Unmodified	_DAAAEERPPD_					0	0	0		ENST00000555759.1_1_14:95912279-95916550:-|nuORF	ENST00000555759.1_1_14:95912279-95916550:-|nuORF	ENST00000555759.1_1_14:95912279-95916550:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7423706054688	2	535.741085	1069.46762	3.3614	0.0018009	-1.435	-0.00076878	1.9264	0.0010321	535.7403688683288	31.003	0.2597	31.003	30.898	31.157	0					8	5	2	0	0	0	0.38194	1	11554	11554		58.23	6.8945	1	749910			6959	10661	3660	3687	7112	7112					-0.06433806563768485
DAAELILHKL	10	Unmodified	_DAAELILHKL_					0	0	0			REV__nc|ENSG00000172379|Q9HBZ2-2|ARNT2;REV__nc|ENSG00000143437|P27540-2|ARNT	REV__nc|ENSG00000143437|P27540-2|ARNT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.8887023925781	3	374.888763	1121.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.705	1	18.705	18.205	19.205	0								0	0	0	0.38879	1	5649	5649		33.922	5.8401	1		+		6960	15192;16461	3661	3688	7113	7113					0.08850274057181196
DAAFGKRKES	10	Unmodified	_DAAFGKRKES_					0	0	0		ENST00000470032.1_1_5:142416808-142421143:+|nuORF	ENST00000470032.1_1_5:142416808-142421143:+|nuORF	ENST00000470032.1_1_5:142416808-142421143:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.7921752929688	2	554.790912	1107.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.539	1	33.539	33.039	34.039	0								0	0	0	0.4201	1	11261	11261		19.104	2.6304	1				6961	9834	3662	3689	7114	7114					0.01779055840847832
DAAGDRLFATY	11	Unmodified	_DAAGDRLFATY_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2898559570312	2	600.288202	1198.56185	3.1189	0.0018723	0.085178	5.1131E-05	3.2041	0.0019234	600.2882310154995	38.083	4.4869	38.083	37.92	42.407	0					281	102	5	0	0	0	0.575	1	16615	16615		38.754	4.832	1	43019000			6962	3795	3663	3690	7115	7115					-0.029486677416116436
DAAGDRLFATY	11	Unmodified	_DAAGDRLFATY_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2908935546875	2	600.288202	1198.56185	3.1218	0.001874	0.40555	0.00024344	3.5274	0.0021174	600.2885894245875	46.329	0.54773	46.329	46.022	46.569	0					40	25	2	0	0	0	0.60656	1	18545	18545		36.447	3.6343	1	99409			6963	3795	3663	3690	7116	7116					-0.029486677416116436
DAAKFMAQ	8	Oxidation (M)	_DAAKFM(Oxidation (M))AQ_		DAAKFM(1)AQ		DAAKFM(53)AQ	0	0	1		ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.2120666503906	2	449.210378	896.406203	0.060263	2.7071E-05	2.73	0.0012263	2.7903	0.0012534	449.21190949691953	20.672	0.28049	20.672	20.558	20.838	0					20	9	4	0	0	0	0.5676	1	5569	5569		53.351	10.955	1	462680			6964	3980	3664	3691	7117	7117		164			-0.04614409796727159
DAAKNQVAM	9	Unmodified	_DAAKNQVAM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2340393066406	2	474.234384	946.454216	-0.26329	-0.00012486	-0.93331	-0.00044261	-1.1966	-0.00056747	474.2338977562964	21.68	0.20326	21.68	21.568	21.771	0					11	6	3	0	0	0	0.27249	1	6018	6018		52.937	17.318	1	69576			6965	2601;3488;7697	3665	3692	7118	7118					-0.021153358766923702
DAAKNQVAM	9	Unmodified	_DAAKNQVAM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.23394775390625	2	474.234384	946.454216	-0.4846	-0.00022981	-0.59753	-0.00028337	-1.0821	-0.00051318	474.2341770264443	21.987	0.26727	21.987	21.898	22.165	0					14	6	3	0	0	0	0.1424	1	7080	7080		69.628	20.186	1	363360			6966	2601;3488;7697	3665	3692	7119	7119					-0.021153358766923702
DAAKNQVAM	9	Unmodified	_DAAKNQVAM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.23394775390625	2	474.234384	946.454216	-1.5974	-0.00075753	0.50681	0.00024035	-1.0906	-0.00051719	474.2347843016375	21.671	0.2891	21.671	21.571	21.86	0					19	8	4	0	0	0	0.032052	1	6267	6267		107.01	38.221	1	680730			6967	2601;3488;7697	3665	3692	7120	7120					-0.021153358766923702
DAAKNQVAM	9	Unmodified	_DAAKNQVAM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.234130859375	2	474.234384	946.454216	0.60873	0.00028868	-1.5496	-0.00073487	-0.94086	-0.00044619	474.23377434059216	21.866	0.31152	21.866	21.759	22.07	0					17	6	4	0	0	0	0.010494	1	7325	7325		139.97	81.189	1	4670300			6968	2601;3488;7697	3665	3692	7121	7121					-0.021153358766923702
DAAKNQVAM	9	Unmodified	_DAAKNQVAM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2342529296875	2	474.234384	946.454216	-0.46336	-0.00021974	-2.08	-0.0009864	-2.5433	-0.0012061	474.23430182607933	21.679	0.48069	21.679	21.39	21.871	0					19	11	3	0	0	0	0.1424	1	6340	6340		69.628	18.292	1	513730			6969	2601;3488;7697	3665	3692	7122	7122					-0.021153358766923702
DAAKNQVAM	9	Unmodified	_DAAKNQVAM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2340087890625	2	474.234384	946.454216	-2.5928	-0.0012296	1.6435	0.0007794	-0.94931	-0.0004502	474.2352387766756	21.749	0.31998	21.749	21.623	21.943	0					15	7	3	0	0	0	0.12239	1	6370	6370		74.255	24.813	1	464450			6970	2601;3488;7697	3665	3692	7123	7123					-0.021153358766923702
DAAKNQVAM	9	Unmodified	_DAAKNQVAM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.23394775390625	2	474.234384	946.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.897	1	21.897	21.397	22.397	0								0	0	0	0.0537	1	7202	7202		85.161	46.355	1				6971	2601;3488;7697	3665	3692	7124	7124					-0.021153358766923702
DAALKANDIQV	11	Unmodified	_DAALKANDIQV_					0	0	0			REV__ENSG00000131738|ENST00000251646|KRT33B	REV__ENSG00000131738|ENST00000251646|KRT33B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.3128051757812	2	579.311677	1156.6088	0.75219	0.00043575	-0.60835	-0.00035242	0.14384	8.3328E-05	579.3119439818134	22.966	0.065334	22.966	22.938	23.004	0					4	2	2	0	0	0	0.38061	1	6583	6583		53.597	0.24542	1	68820	+	+	6972	12571	3666	3693	7125	7125					0.036761918094953216
DAANLRETF	9	Unmodified	_DAANLRETF_					0	0	0		ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7567749023438	2	518.756538	1035.49852	0.13414	6.9584E-05	0.73982	0.00038378	0.87395	0.00045337	518.7566001420024	34.857	0.13398	34.857	34.785	34.919	0					10	6	2	0	0	0	0.38666	1	11759	11759		42.864	10.052	1	84757			6973	5679	3667	3694	7126	7126					-0.017806084588755766
DAARLQAAY	9	Unmodified	_DAARLQAAY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.753662109375	2	489.753798	977.493044	-0.11251	-5.5102E-05	-0.58598	-0.00028699	-0.69849	-0.00034209	489.75354116931146	29.159	0.25601	29.159	29.044	29.3	0					24	9	3	0	0	0	0.12834	1	9155	9155		72.879	25.222	1	899820			6974	2899	3668	3695	7127	7127					0.0033971274931445805
DAARLQAAY	9	Unmodified	_DAARLQAAY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.75396728515625	2	489.753798	977.493044	-1.2543	-0.00061429	0.64858	0.00031765	-0.6057	-0.00029664	489.75413671153814	29.159	0.32741	29.159	29.084	29.411	0					28	13	3	0	0	0	0.24334	1	9464	9464		56.434	8.7765	1	652850			6975	2899	3668	3695	7128	7128					0.0033971274931445805
DAARLQAAY	9	Unmodified	_DAARLQAAY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7535705566406	2	489.753798	977.493044	-0.13605	-6.663E-05	-0.31412	-0.00015384	-0.45017	-0.00022047	489.7535980737121	29.215	0.33989	29.215	29.086	29.426	0					19	9	3	0	0	0	0.085655	1	9787	9787		82.75	34.791	1	930770			6976	2899	3668	3695	7129	7129					0.0033971274931445805
DAASHIPTL	9	Unmodified	_DAASHIPTL_					0	0	0			REV__ASB15|p.W524Lfs*15|1|0.12|ENSG00000146809|chr7:123630095-123630096|-/TGATAAAATTTAATTTAGTA|frameshift_variant	REV__ASB15|p.W524Lfs*15|1|0.12|ENSG00000146809|chr7:123630095-123630096|-/TGATAAAATTTAATTTAGTA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7424621582031	2	462.742899	923.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.916	1	36.916	36.416	37.416	0								0	0	0	0.3368	1	13959	13959		27.882	2.3082	1		+		6977	12231	3669	3696	7130	7130					0.006449080007655539
DAASIKKAK	9	Unmodified	_DAASIKKAK_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.28167724609375	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.407	1	17.407	16.907	17.907	0								0	0	0	0.082437	1	4146	4146		76.774	11.309	1		+		6978	14981	3670	3697	7131	7131					0.08177760305841275
DAATIPSSAMQ	11	Oxidation (M)	_DAATIPSSAM(Oxidation (M))Q_		DAATIPSSAM(1)Q		DAATIPSSAM(93)Q	0	0	1		nc|ENSG00000010803|Q96GD3-6|SCMH1;nc|ENSG00000010803|Q96GD3-5|SCMH1;nc|ENSG00000010803|Q96GD3-4|SCMH1;nc|ENSG00000010803|Q96GD3-3|SCMH1;nc|ENSG00000010803|Q96GD3-2|SCMH1;nc|ENSG00000010803|Q96GD3|SCMH1;ENSG00000010803|ENST00000695335|SCMH1	nc|ENSG00000010803|Q96GD3-6|SCMH1	nc|ENSG00000010803|Q96GD3-6|SCMH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2550048828125	2	554.252971	1106.49139	3.6042	0.0019977	-0.28726	-0.00015922	3.317	0.0018384	554.252857237721	15.622	0.11933	15.622	15.562	15.681	0					6	2	3	0	0	0	0.085907	1	4170	4170		93.143	18.1	1	921110			6979	1040	3671	3698	7132	7132		46			-0.057597091215939145
DAATYQVTY	9	Unmodified	_DAATYQVTY_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2379760742188	2	516.237647	1030.46074	1.5225	0.000786	-0.92822	-0.00047918	0.59433	0.00030682	516.237181337011	39.248	0.14412	39.248	39.157	39.301	0					5	3	2	0	0	0	0.40353	1	15508	15508		41.427	0.85399	1	61241			6980	3049	3672	3699	7133	7133					-0.05327119444314121
DAAVTPQGLF	10	Unmodified	_DAAVTPQGLF_					0	0	0			REV__ENST00000502875.1_1_4:141563950-141565549:-|nuORF	REV__ENST00000502875.1_1_4:141563950-141565549:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7655944824219	2	509.763832	1017.51311	-0.41347	-0.00021077	-1.0134	-0.0005166	-1.4269	-0.00072738	510.26320766779224	33.276	0.17191	33.276	33.124	33.296	0					6	4	2	0	0	0	0.58308	1	12724	12724		24.519	0	1	52877	+		6981	19812	3673	3700	7134	7134					0.005054636892964481
DAAVTTVKQ	9	Unmodified	_DAAVTTVKQ_					0	0	0			REV__nc|ENSG00000146904|P21709-3|EPHA1	REV__nc|ENSG00000146904|P21709-3|EPHA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.75616455078125	2	466.756007	931.497461	0.40726	0.00019009	-0.58474	-0.00027293	-0.17748	-8.284E-05	466.75587446153844	24.176	0.14582	24.176	24.09	24.236	0					8	3	3	0	0	0	0.44593	1	8116	8116		37.812	0.65241	1	220700	+		6982	15323	3674	3701	7135	7135					0.028971771722467565
DAAYSHHY	8	Unmodified	_DAAYSHHY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2010498046875	2	482.201399	962.388245	0.074832	3.6084E-05	-0.47531	-0.0002292	-0.40048	-0.00019311	482.20093065773233	18.719	0.1085	18.719	18.646	18.755	0					5	3	2	0	0	0	0.49887	1	4711	4711		60.294	23.135	1	80590			6983	1310	3675	3702	7136	7136					-0.09445408727242466
DAAYSHHY	8	Unmodified	_DAAYSHHY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2010803222656	2	482.201399	962.388245	-0.10657	-5.1386E-05	-0.21457	-0.00010347	-0.32114	-0.00015485	482.20122979078616	19.001	0.17102	19.001	18.953	19.124	0					10	4	3	0	0	0	0.28158	1	5665	5665		88.643	51.484	1	442050			6984	1310	3675	3702	7137	7137					-0.09445408727242466
DAAYSHHY	8	Unmodified	_DAAYSHHY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2010498046875	2	482.201399	962.388245	-1.3192	-0.00063613	0.92677	0.00044689	-0.39244	-0.00018924	482.20194971376463	18.71	0.11339	18.71	18.626	18.739	0					7	4	2	0	0	0	0.41952	1	4932	4932		68.485	29.679	1	94033			6985	1310	3675	3702	7138	7138					-0.09445408727242466
DAAYSHHY	8	Unmodified	_DAAYSHHY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.20111083984375	2	482.201399	962.388245	0.69019	0.00033281	-1.3519	-0.0006519	-0.66172	-0.00031908	482.2007886862859	18.925	0.21584	18.925	18.867	19.083	0					9	4	3	0	0	0	0.27084	1	5910	5910		92.191	55.162	1	615110			6986	1310	3675	3702	7139	7139					-0.09445408727242466
DACTLAEKY	9	Unmodified	_DACTLAEKY_					0	0	0		ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19	ENSG00000146955|ENST00000537763|RAB19	ENSG00000146955|ENST00000537763|RAB19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.23406982421875	2	507.23405	1012.45355	-0.089459	-4.5377E-05	-1.8623	-0.00094464	-1.9518	-0.00099002	507.23470336482757	33.529	0.30558	33.529	33.331	33.636	0					18	10	3	0	0	0	0.42902	1	10921	10921		39.253	3.6345	1	86249			6987	4758	3676	3703	7140	7140					-0.05218175316406359
DACTLAEKY	9	Unmodified	_DACTLAEKY_					0	0	0		ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19	ENSG00000146955|ENST00000537763|RAB19	ENSG00000146955|ENST00000537763|RAB19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.23394775390625	2	507.23405	1012.45355	-0.033956	-1.7224E-05	-1.9971	-0.001013	-2.031	-0.0010302	507.2347763047635	33.699	0.61316	33.699	33.568	34.181	0					27	16	2	0	0	0	0.0406	2	12513	12492;12513		98.629	47.294	1	430410			6988	4758	3676	3703	7141;7142	7142					-0.05218175316406359
DACTLAEKY	9	Unmodified	_DACTLAEKY_					0	0	0		ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19	ENSG00000146955|ENST00000537763|RAB19	ENSG00000146955|ENST00000537763|RAB19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2334899902344	2	507.23405	1012.45355	-0.65449	-0.00033198	0.091556	4.6441E-05	-0.56293	-0.00028554	507.2341932298477	33.551	0.22342	33.551	33.48	33.703	0					11	8	2	0	0	0	0.36135	1	11277	11277		45.022	8.5755	1	76249			6989	4758	3676	3703	7143	7143					-0.05218175316406359
DACTLAEKY	9	Unmodified	_DACTLAEKY_					0	0	0		ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19	ENSG00000146955|ENST00000537763|RAB19	ENSG00000146955|ENST00000537763|RAB19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.23358154296875	2	507.23405	1012.45355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.551	1	33.551	33.051	34.051	0								0	0	0	0.17378	1	11788	11788		54.776	13.998	1				6990	4758	3676	3703	7144	7144					-0.05218175316406359
DADQQDEQ	8	Unmodified	_DADQQDEQ_					0	0	0			REV__nc|ENSG00000168404|Q8NB16-2|MLKL	REV__nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.6801452636719	2	474.680693	947.346833	0.6126	0.00029079	-0.63252	-0.00030025	-0.019918	-9.4546E-06	474.6802572973826	49.608	0.49107	49.608	49.408	49.899	0					30	17	2	0	0	0	0.79719	1	18762	18762		18.324	0.062328	1	174960	+		6991	16256	3677	3704	7145	7145					-0.12894634277222394
DAEAKFIPA	9	Unmodified	_DAEAKFIPA_					0	0	0			REV__tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1	REV__tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2549133300781	2	481.2531	960.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.091	1	31.091	30.591	31.591	0								0	0	0	0.27939	1	10273	10273		39.253	0.44669	1		+		6992	22189	3678	3705	7146	7146					0.009820786605587273
DAEGKVIGL	9	Unmodified	_DAEGKVIGL_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2;CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.252685546875	2	451.2531	900.491647	0.87621	0.00039539	-2.0442	-0.00092246	-1.168	-0.00052707	451.2522220303913	39.262	0.54618	39.262	39.11	39.656	0					17	12	2	0	0	0	0.26904	1	15506	15506		53.351	2.016	1	99116			6993	441	3679	3706	7147	7147					0.03742078660570769
DAEGLPQQQQ	10	Unmodified	_DAEGLPQQQQ_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7644653320312	2	557.262185	1112.50982	0.11831	6.593E-05	2.7506	0.0015328	2.8689	0.0015988	557.2645670865357	27.41	0.20441	27.41	27.296	27.501	0					17	7	3	0	0	0	0.39566	1	8718	8718		56.721	5.5284	1	97936			6994	1242	3680	3707	7148	7148					-0.04193831155362204
DAEIDLDDF	9	Unmodified	_DAEIDLDDF_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7254638671875	2	526.724569	1051.43459	1.628	0.00085752	0.44403	0.00023388	2.072	0.0010914	526.7246554935291	37.895	0.29947	37.895	37.739	38.039	0					17	6	4	0	0	0	0.25109	1	14843	14843		55.504	5.9682	1	697740	+		6995	13259	3681	3708	7149	7149					-0.08907433406466225
DAEIKLTIQ	9	Unmodified	_DAEIKLTIQ_					0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.792236328125	2	515.792589	1029.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.063	1	37.063	36.563	37.563	0								0	0	0	0.23111	1	12543	12543		46.457	5.0302	1		+	+	6996	12609	3682	3709	7150	7150					0.057023058948516336
DAELSKAKK	9	Unmodified	_DAELSKAKK_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.28448486328125	2	495.284931	988.55531	-2.4444	-0.0012107	2.0328	0.0010068	-0.41163	-0.00020387	495.2860398703956	24.337	0.17523	24.337	24.251	24.426	0					6	4	2	0	0	0	0.087861	1	7581	7581		82.241	4.9229	1	195040	+		6997	14706	3683	3710	7151	7151					0.06057439097662609
DAFAVGVR	8	Unmodified	_DAFAVGVR_					0	0	0			REV__nc|ENSG00000186628|A1L4K1-2|FSD2	REV__nc|ENSG00000186628|A1L4K1-2|FSD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.7271423339844	2	417.727052	833.439552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.864	1	30.864	30.364	31.364	0								0	0	0	1.7419	1	10178	10178		24.203	1.1603	1		+		6998	17085	3684	3711	7152	7152					0.0161696003748375
DAFGYATLK	9	Unmodified	_DAFGYATLK_					0	0	0		RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2530212402344	2	493.2531	984.491647	0.6254	0.00030848	-1.6096	-0.00079393	-0.98418	-0.00048545	493.25254723501195	33.301	0.39754	33.301	33.22	33.618	0					23	9	3	0	0	0	0.39215	1	12747	12747		42.396	2.338	1	458730			6999	5684	3685	3712	7153	7153					-0.001219213394392682
DAFGYATLK	9	Unmodified	_DAFGYATLK_					0	0	0		RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2528076171875	2	493.2531	984.491647	0.86474	0.00042654	-1.3373	-0.00065963	-0.47257	-0.0002331	493.2524032101711	33.291	0.36626	33.291	33.183	33.549	0					12	7	2	0	0	0	0.25716	1	12627	12627		54.776	7.119	1	1706800			7000	5684	3685	3712	7154	7154					-0.001219213394392682
DAFKASVY	8	Unmodified	_DAFKASVY_					0	0	0		SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant;ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7265319824219	2	450.726718	899.438883	0.017724	7.9887E-06	-0.50409	-0.00022721	-0.48637	-0.00021922	450.7264461340918	33.565	0.13234	33.565	33.493	33.625	0					7	4	2	0	0	0	0.37144	1	10925	10925		74.255	18.751	1	109430			7001	5523	3686	3713	7155	7155					-0.014858794022416077
DAFKASVY	8	Unmodified	_DAFKASVY_					0	0	0		SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant;ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.72637939453125	2	450.726718	899.438883	0.64154	0.00028916	-1.1802	-0.00053193	-0.53862	-0.00024277	450.72608950743773	33.808	0.31189	33.808	33.698	34.009	0					13	8	2	0	0	0	0.25376	1	12535	12535		138.83	78.532	1	366790			7002	5523	3686	3713	7156	7156					-0.014858794022416077
DAFKASVY	8	Unmodified	_DAFKASVY_					0	0	0		SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant;ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.72674560546875	2	450.726718	899.438883	-0.10391	-4.6836E-05	0.11557	5.2092E-05	0.011661	5.2561E-06	450.72665494207524	33.808	0.25753	33.808	33.723	33.981	0					13	6	3	0	0	0	0.27635	1	12966	12966		90.37	27.064	1	276240			7003	5523	3686	3713	7157	7157					-0.014858794022416077
DAFKASVY	8	Unmodified	_DAFKASVY_					0	0	0		SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant;ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.72662353515625	2	450.726718	899.438883	-0.40386	-0.00018203	0.58364	0.00026306	0.17978	8.1031E-05	450.72692883422087	33.755	0.37033	33.755	33.65	34.021	0					18	8	3	0	0	0	0.2678	1	12868	12868		93.195	43.171	1	403420			7004	5523	3686	3713	7158	7158					-0.014858794022416077
DAFKSGIVQY	10	Unmodified	_DAFKSGIVQY_					0	0	0		ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant;ERAP1|p.T768Nfs*53|1|0.2|ENSG00000164307|chr5:96781837-96781838|-/GAAAT|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.2898559570312	2	564.290214	1126.56587	1.2366	0.00069781	-0.99778	-0.00056303	0.23884	0.00013478	564.2896416263355	38.806	0.20992	38.806	38.721	38.93	0					28	12	3	0	0	0	0.18316	1	12629	12629		81.525	17.318	1	166960			7005	5681	3687	3714	7159	7159					0.007654217520894235
DAFKSGIVQY	10	Unmodified	_DAFKSGIVQY_					0	0	0		ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant;ERAP1|p.T768Nfs*53|1|0.2|ENSG00000164307|chr5:96781837-96781838|-/GAAAT|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.2900390625	2	564.290214	1126.56587	0.37082	0.00020925	0.16493	9.3068E-05	0.53574	0.00030232	564.2901722354862	39.101	0.34366	39.101	38.998	39.342	0					33	12	4	0	0	0	0.34979	1	14863	14863		61.765	13.849	1	965460			7006	5681	3687	3714	7160	7160					0.007654217520894235
DAFKSGIVQY	10	Unmodified	_DAFKSGIVQY_					0	0	0		ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant;ERAP1|p.T768Nfs*53|1|0.2|ENSG00000164307|chr5:96781837-96781838|-/GAAAT|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.29150390625	2	564.290214	1126.56587	0.13482	7.6078E-05	1.5275	0.00086196	1.6623	0.00093804	564.2909846626382	38.899	0.21576	38.899	38.836	39.052	0					25	12	3	0	0	0	0.30252	1	13088	13088		66.962	22.585	1	209880			7007	5681	3687	3714	7161	7161					0.007654217520894235
DAFLWNGS	8	Unmodified	_DAFLWNGS_					0	0	0		ENSG00000136040|ENST00000258526|PLXNC1;PLXNC1|p.C506Vfs*3|1|0.22|ENSG00000136040|chr12:94209658-94209659|-/A|frameshift_variant;PLXNC1|p.L809*|1|0.11|ENSG00000136040|chr12:94247936-94247936|T/-|frameshift_variant;PLXNC1|p.D901Rfs*10|1|0.03|ENSG00000136040|chr12:94248333-94248334|-/G|frameshift_variant;PLXNC1|p.I1400Sfs*21|1|0.37|ENSG00000136040|chr12:94298749-94298749|A/-|frameshift_variant	ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.20831298828125	2	455.208692	908.402832	-1.1242	-0.00051173	0.54049	0.00024604	-0.58367	-0.00026569	455.2089299495147	33.523	0.17588	33.523	33.461	33.637	0					10	6	2	0	0	0	0.65276	1	11279	11279		40.573	0	1	54448			7008	4048	3688	3715	7162	7162					-0.05503336579090501
DAFRLLAQY	9	Unmodified	_DAFRLLAQY_					0	0	0		ENST00000521189.1_1_8:62212560-62289213:+|nuORF;nc|ENSG00000177182|Q8IUQ0-2|CLVS1;ENSG00000177182|ENST00000325897|CLVS1	ENST00000521189.1_1_8:62212560-62289213:+|nuORF	ENST00000521189.1_1_8:62212560-62289213:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7935180664062	2	548.792924	1095.57129	1.8442	0.0010121	-1.0854	-0.00059566	0.75883	0.00041644	548.7922649219638	32.106	0.53579	32.106	31.779	32.315	0					29	13	3	0	0	0	0.47038	1	11729	11729		35.618	1.4457	1	248000			7009	6651	3689	3716	7163	7163					0.027331453345595946
DAFRSWAV	8	Unmodified	_DAFRSWAV_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2375183105469	2	476.237784	950.461016	0.7777	0.00037037	-0.77947	-0.00037121	-0.0017681	-8.4204E-07	476.2372374714101	44.032	0.22367	44.032	43.902	44.126	0					16	9	3	0	0	0	0.69548	1	17634	17634		34.173	2.2177	1	113780			7010	996	3690	3717	7164	7164					-0.01619654933813308
DAFWNSSKY	9	Unmodified	_DAFWNSSKY_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4;ENSG00000138678|ENST00000264409|GPAT3	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2510986328125	2	559.251089	1116.48762	1.8259	0.0010211	-1.1573	-0.00064723	0.66859	0.00037391	559.2501175320552	40.977	0.27782	40.977	40.881	41.159	0					8	6	2	0	0	0	0.48623	1	16283	16283		33.922	1.1092	1	74089			7011	5276	3691	3718	7165	7165					-0.06596010833118271
DAGFKNSAK	9	Unmodified	_DAGFKNSAK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7352294921875	2	469.240524	936.466495	-0.52219	-0.00024503	-0.081957	-3.8458E-05	-0.60415	-0.00028349	469.2406152904753	21.497	0.16584	21.497	21.437	21.603	0					8	3	3	0	0	0	0.41113	1	6998	6998		40.778	4.3314	1	437610	+		7012	15602;22247	3692	3719	7166	7166					-0.004279761419979877
DAGGIQFIRI	10	Unmodified	_DAGGIQFIRI_					0	0	0			REV__ENST00000554171.1_3_14:42170598-42236083:+|nuORF	REV__ENST00000554171.1_3_14:42170598-42236083:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.306640625	2	545.306198	1088.59784	0.39593	0.0002159	0.75625	0.00041239	1.1522	0.00062829	545.3064661190676	26.2	0.21408	26.2	26.112	26.326	0					12	5	3	0	0	0	0.41335	1	9015	9015		54.776	5.3348	1	564230	+		7013	20230	3693	3720	7167	7167					0.057088342259021374
DAGIRAMD	8	Oxidation (M)	_DAGIRAM(Oxidation (M))D_		DAGIRAM(1)D		DAGIRAM(79)D	0	0	1		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.69775390625	2	432.697635	863.380716	0.89558	0.00038751	-0.88164	-0.00038148	0.013935	6.0296E-06	432.6971769430498	31.809	0.26795	31.809	31.701	31.969	0					7	5	2	0	0	0	0.32815	1	11945	11945		79.451	8.1553	1	231310			7014	6393	3694	3721	7168	7168		263			-0.056438843191585875
DAGITTKLL	9	Unmodified	_DAGITTKLL_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.276123046875	2	466.276575	930.538597	-0.13488	-6.2889E-05	-0.1156	-5.3903E-05	-0.25048	-0.00011679	466.27645642552716	33.847	1.0571	33.847	33.02	34.077	0					58	25	3	0	0	0	0.47473	1	13063	13063		35.152	2.3396	1	510210			7015	2406	3695	3722	7169	7169					0.07054938211717854
DAGKIDTVL	9	Unmodified	_DAGKIDTVL_					0	0	0			REV__ENSG00000134020|ENST00000256404|PEBP4	REV__ENSG00000134020|ENST00000256404|PEBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2605895996094	2	466.258382	930.502212	0.65291	0.00030443	2.9286	0.0013655	3.5816	0.0016699	466.2602791232645	34.242	0.74481	34.242	33.989	34.734	0					31	15	3	0	0	0	0.17854	1	13117	13117		64.207	0.901	1	450100	+		7016	14728	3696	3723	7170	7170					0.034180613149942474
DAGLLGGPGR	10	Unmodified	_DAGLLGGPGR_					0	0	0			REV__ENST00000533880.1_1_11:86511647-86643773:+|nuORF	REV__ENST00000533880.1_1_11:86511647-86643773:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7482604980469	2	456.748516	911.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.48	1	20.48	19.98	20.98	0								0	0	0	0.32041	1	6511	6511		47.657	6.8792	1		+		7017	20087	3697	3724	7171	7171					0.023197300949163946
DAGLLLVVK	9	Unmodified	_DAGLLLVVK_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2;SLC46A2|p.L90Cfs*53|1|0.25|ENSG00000119457|chr9:112890414-112890414|G/-|frameshift_variant	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2968444824219	2	464.29731	926.580068	0.72653	0.00033732	-0.8065	-0.00037446	-0.079976	-3.7132E-05	464.2969784119208	43.839	0.16866	43.839	43.765	43.934	0					10	5	2	0	0	0	0.12239	1	17556	17556		74.255	2.3776	1	119690			7018	3116	3698	3725	7172	7172					0.11384118971045609
DAGMAPRLL	9	Unmodified	_DAGMAPRLL_					0	0	0		ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2547302246094	2	472.25512	942.495686	0.21235	0.00010028	-0.82051	-0.00038749	-0.60816	-0.00028721	472.2547570585634	29.915	0.69035	29.915	29.527	30.217	0					42	17	3	0	0	0	0.39215	1	10739	10739		42.396	1.618	1	262090			7019	9622	3699	3726	7173	7173					0.02213844882646754
DAGPPPISR	9	Unmodified	_DAGPPPISR_					0	0	0		PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.24285888671875	2	455.243067	908.47158	-0.36802	-0.00016754	-0.078212	-3.5605E-05	-0.44623	-0.00020314	455.2429897334699	16.957	0.20442	16.957	16.834	17.039	0					12	8	2	0	0	0	0.36892	1	3958	3958		44.377	0.26039	1	52160			7020	4643	3700	3727	7174	7174					0.01368327720626894
DAGPPTHAF	9	Unmodified	_DAGPPTHAF_					0	0	0		ENSG00000197329|ENST00000358912|PELI1;ENSG00000139946|ENST00000267460|PELI2	ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7135925292969	2	456.714142	911.413731	0.038513	1.7589E-05	-0.43186	-0.00019723	-0.39334	-0.00017965	456.7139136953369	28.921	0.63981	28.921	28.661	29.3	0					52	23	3	0	0	0	0.18605	2	9146	8993;9146		63.306	30.504	1	281740			7021	4361	3701	3728	7175;7176	7176					-0.04551934204812369
DAGPPTHAF	9	Unmodified	_DAGPPTHAF_					0	0	0		ENSG00000197329|ENST00000358912|PELI1;ENSG00000139946|ENST00000267460|PELI2	ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.71417236328125	2	456.714142	911.413731	-1.0528	-0.00048083	0.55989	0.00025571	-0.49291	-0.00022512	456.7143522466581	28.963	0.57259	28.963	28.647	29.22	0					46	22	3	0	0	0	0.45358	1	9336	9336		37.159	0	1	197580			7022	4361	3701	3728	7177	7177					-0.04551934204812369
DAGPPTHAF	9	Unmodified	_DAGPPTHAF_					0	0	0		ENSG00000197329|ENST00000358912|PELI1;ENSG00000139946|ENST00000267460|PELI2	ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7137451171875	2	456.714142	911.413731	-0.14591	-6.6641E-05	-0.174	-7.9468E-05	-0.31991	-0.00014611	456.7140124488967	29.171	0.66079	29.171	28.829	29.49	0					37	14	3	0	0	0	0.20551	2	10714	10714;10886		60.972	26.799	1	722710			7023	4361	3701	3728	7178;7179	7178					-0.04551934204812369
DAGPPTHAF	9	Unmodified	_DAGPPTHAF_					0	0	0		ENSG00000197329|ENST00000358912|PELI1;ENSG00000139946|ENST00000267460|PELI2	ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.7135314941406	2	456.714142	911.413731	0.079145	3.6147E-05	-0.15202	-6.9427E-05	-0.07287	-3.3281E-05	456.7140705507756	28.983	0.63428	28.983	28.651	29.285	0					36	16	3	0	0	0	0.099922	1	9625	9625		79.451	29.426	1	172100			7024	4361	3701	3728	7180	7180					-0.04551934204812369
DAGPPTHAF	9	Unmodified	_DAGPPTHAF_					0	0	0		ENSG00000197329|ENST00000358912|PELI1;ENSG00000139946|ENST00000267460|PELI2	ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.71392822265625	2	456.714142	911.413731	-0.43279	-0.00019766	0.15429	7.0464E-05	-0.27851	-0.0001272	456.7141677260122	29.152	0.90931	29.152	28.707	29.617	0					46	18	3	0	0	0	0.1115	2	10545	10545;10735		76.774	37.968	1	1685700			7025	4361	3701	3728	7181;7182	7181					-0.04551934204812369
DAGRHRRQ	8	Unmodified	_DAGRHRRQ_					0	0	0			REV__ENST00000366919.6_1_6:161527714-161529788:+|nuORF	REV__ENST00000366919.6_1_6:161527714-161529788:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2668151855469	2	498.26573	994.516908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.089	1	15.089	14.589	15.589	0								0	0	0	1.7419	1	3823	3823		44.117	3.3386	1		+		7026	18590	3702	3729	7183	7183					0.019429910263738748
DAGVYSARY	9	Unmodified	_DAGVYSARY_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK;TEK|p.S586Vfs*12|1|0.27|ENSG00000120156|chr9:27197441-27197441|A/-|frameshift_variant;TEK|p.E624Nfs*33|1|0.41|ENSG00000120156|chr9:27197556-27197556|G/-|frameshift_variant;TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant;TEK|p.N884Kfs*6|1|0.16|ENSG00000120156|chr9:27209197-27209197|C/-|frameshift_variant;TEK|p.P417Lfs*10|1|0.71|ENSG00000120156|chr9:27185547-27185547|C/-|frameshift_variant	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2378845214844	2	501.237981	1000.46141	-0.97247	-0.00048744	0.2628	0.00013172	-0.70967	-0.00035571	501.23832234723875	26.826	0.16805	26.826	26.707	26.875	0					9	6	2	0	0	0	0.41113	1	8462	8462		40.778	5.1599	1	75908			7027	3162	3703	3730	7184	7184					-0.03880280004625547
DAHALIYK	8	Unmodified	_DAHALIYK_					0	0	0		ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.75738525390625	2	465.75581	929.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.164	1	29.164	28.664	29.664	0								0	0	0	1.7419	1	9774	9774		60.294	8.9585	1				7028	5098	3704	3731	7185	7185					0.029498022430516357
DAHGNHLAEE	10	Unmodified	_DAHGNHLAEE_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.73876953125	2	546.738877	1091.4632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.366	1	22.366	21.866	22.866	0								0	0	0	0.4162	1	6650	6650		25.574	1.3713	1				7029	3266	3705	3732	7186	7186					-0.07887270986657313
DAHGSFCF	8	Carbamidomethyl (C)	_DAHGSFC(Carbamidomethyl (C))F_	DAHGSFC(1)F		DAHGSFC(52)F		0	1	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.6842346191406	2	470.684527	939.354502	0.16054	7.5562E-05	-0.9737	-0.0004583	-0.81316	-0.00038274	470.68416925471416	39.363	0.3918	39.363	39.252	39.644	0					28	14	3	0	0	0	0.57802	1	14970	14970		52.299	6.3472	1	247180			7030	2223	3706	3733	7187	7187	89				-0.11760153490638459
DAHISSML	8	Unmodified	_DAHISSML_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2103271484375	2	437.210378	872.406203	-0.40007	-0.00017492	-0.55369	-0.00024208	-0.95376	-0.000417	437.2103279694511	37.52	0.25357	37.52	37.415	37.669	0					16	7	3	0	0	0	0.32408	1	14208	14208		79.939	19.645	1	221010			7031	1917	3707	3734	7188	7188					-0.03510409796740532
DAHISSML	8	Unmodified	_DAHISSML_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.21026611328125	2	437.210378	872.406203	-0.91998	-0.00040222	0.45907	0.00020071	-0.46091	-0.00020151	437.2106116398874	37.272	0.21231	37.272	37.184	37.397	0					18	11	2	0	0	0	0.4723	1	12603	12603		62.978	8.2138	1	117400			7032	1917	3707	3734	7189	7189					-0.03510409796740532
DAHISSML	8	Unmodified	_DAHISSML_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.21038818359375	2	437.210378	872.406203	0.7297	0.00031903	-1.3796	-0.00060317	-0.64988	-0.00028413	437.2098535310548	37.482	0.30693	37.482	37.387	37.694	0					23	9	3	0	0	0	0.41952	1	14660	14660		68.485	5.1784	1	753460			7033	1917	3707	3734	7190	7190					-0.03510409796740532
DAHKSEVAH	9	Unmodified	_DAHKSEVAH_					0	0	0		nc|ENSG00000163631|P02768-2|ALB;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-2|ALB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2412414550781	2	497.241055	992.467557	-0.02961	-1.4723E-05	-0.50232	-0.00024977	-0.53193	-0.0002645	497.2409869971378	11.326	0.088171	11.326	11.272	11.36	0					5	3	2	0	0	0	0.035062	1	2295	2295		104.06	43.085	1	65299		+	7034	110	3708	3735	7191	7191					-0.02897761773090224
DAHMLDTQY	9	Unmodified	_DAHMLDTQY_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2352905273438	2	547.234581	1092.45461	1.8345	0.0010039	-0.78219	-0.00042804	1.0523	0.00057586	547.2342842323436	34.795	0.27758	34.795	34.727	35.004	0					15	8	3	0	0	0	0.087861	1	13452	13452		82.241	16.775	1	263620			7035	3651	3709	3736	7192	7192					-0.08791960947496591
DAHPTLVTY	9	Unmodified	_DAHPTLVTY_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7558898925781	2	508.756007	1015.49746	-0.1028	-5.2299E-05	0.26757	0.00013613	0.16477	8.383E-05	508.75611810151224	34.791	0.32186	34.791	34.701	35.023	0					33	14	3	0	0	0	0.13519	1	11376	11376		71.296	25.344	1	434680			7036	5833	3710	3737	7193	7193					-0.009668228277405433
DAHPTLVTY	9	Unmodified	_DAHPTLVTY_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7557678222656	2	508.756007	1015.49746	-0.021571	-1.0974E-05	0.056971	2.8984E-05	0.0354	1.801E-05	508.75592466676216	35.069	0.40098	35.069	34.943	35.344	0					29	10	4	0	0	0	0.22377	1	13108	13108		58.782	9.3404	1	2546600			7037	5833	3710	3737	7194	7194					-0.009668228277405433
DAHPTLVTY	9	Unmodified	_DAHPTLVTY_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7559509277344	2	508.756007	1015.49746	1.1513	0.00058572	-2.0224	-0.0010289	-0.87112	-0.00044319	508.75481106329767	35.068	0.65358	35.068	34.959	35.613	0					29	18	2	0	0	0	0.1115	1	13553	13553		76.774	26.75	1	3055100			7038	5833	3710	3737	7195	7195					-0.009668228277405433
DAHSNILDEL	10	Unmodified	_DAHSNILDEL_					0	0	0			REV__NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	REV__NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.2734985351562	2	563.772385	1125.53022	0.13321	7.5101E-05	1.0369	0.00058457	1.1701	0.00065967	563.7730195795689	30.449	0.43644	30.449	30.346	30.782	0					21	15	2	0	0	0	0.66185	1	10111	10111		26.693	1.1189	1	636700	+		7039	15386	3711	3738	7196	7196					-0.027526604955710354
DAHVDSTTY	9	Unmodified	_DAHVDSTTY_					0	0	0		NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7172546386719	2	504.717079	1007.4196	0.67618	0.00034128	-0.44825	-0.00022624	0.22793	0.00011504	504.7170532221904	23.876	0.24642	23.876	23.751	23.997	0					19	9	3	0	0	0	0.11118	1	6984	6984		76.847	36.274	1	124330			7040	2574	3712	3739	7197	7197					-0.0838088048380996
DAHVDSTTY	9	Unmodified	_DAHVDSTTY_					0	0	0		NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7172546386719	2	504.717079	1007.4196	0.7862	0.00039681	-0.65317	-0.00032967	0.13303	6.7141E-05	504.71678036374857	24.132	0.36537	24.132	24.006	24.372	0					20	8	4	0	0	0	0.25109	1	8078	8078		55.504	6.0627	1	957070			7041	2574	3712	3739	7198	7198					-0.0838088048380996
DAHVDSTTY	9	Unmodified	_DAHVDSTTY_					0	0	0		NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7167663574219	2	504.717079	1007.4196	-0.80609	-0.00040685	0.443	0.00022359	-0.3631	-0.00018326	504.7172969615825	23.854	0.29538	23.854	23.768	24.064	0					21	10	3	0	0	0	0.099922	1	7216	7216		79.451	19.157	1	397230			7042	2574	3712	3739	7199	7199					-0.0838088048380996
DAIDRYLK	8	Unmodified	_DAIDRYLK_					0	0	0		tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	331.8502197265625	3	331.850308	992.529095	-0.70278	-0.00023322	0.56997	0.00018914	-0.13281	-4.4073E-05	331.85050652617895	24.428	0.13496	24.428	24.364	24.498	0					11	4	3	0	0	0	0.79882	1	7481	7481		21.96	2.8564	1	159110			7043	22662	3713	3740	7200	7200					0.03253169926188093
DAIDRYLK	8	Unmodified	_DAIDRYLK_					0	0	0		tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.27191162109375	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.53	1	24.53	24.03	25.03	0								0	0	0	1.7419	1	7662	7662		54.776	3.4409	1				7044	22662	3713	3740	7201	7201					0.03253169926188093
DAIKQNVQH	9	Unmodified	_DAIKQNVQH_					0	0	0			REV__ENSG00000184949|ENST00000535113|FAM227A	REV__ENSG00000184949|ENST00000535113|FAM227A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2816162109375	2	526.777805	1051.54106	0.39024	0.00020557	2.1334	0.0011238	2.5236	0.0013294	527.2811073681514	16.266	0.086979	16.266	16.217	16.304	0					6	3	2	0	0	0	0.57706	1	3872	3872		24.203	1.1603	1	64020	+		7045	16999	3714	3741	7202	7202					0.017347866693853575
DAILQSVAI	9	Unmodified	_DAILQSVAI_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.26849365234375	2	465.26875	928.522947	0.51021	0.00023739	-0.92841	-0.00043196	-0.4182	-0.00019457	465.2681284000918	31.493	0.25275	31.493	31.331	31.584	0					12	6	2	0	0	0	0.41113	1	11483	11483		40.778	1.5253	1	95386	+		7046	15343	3715	3742	7203	7203					0.055826516946467564
DAINAETVL	9	Unmodified	_DAINAETVL_					0	0	0		SERPINB12|p.S253Pfs*12|1|0.07|ENSG00000166634|chr18:63565555-63565556|-/CCAA|frameshift_variant;nc|ENSG00000166634|Q96P63|SERPINB12;ENSG00000166634|ENST00000382768|SERPINB12	SERPINB12|p.S253Pfs*12|1|0.07|ENSG00000166634|chr18:63565555-63565556|-/CCAA|frameshift_variant	SERPINB12|p.S253Pfs*12|1|0.07|ENSG00000166634|chr18:63565555-63565556|-/CCAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2480773925781	2	473.248015	944.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.991	1	25.991	25.491	26.491	0								0	0	0	0.28666	1	7846	7846		37.812	2.6108	1				7047	5921	3716	3743	7204	7204					0.007014709353256876
DAIRLAVSY	9	Unmodified	_DAIRLAVSY_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2796936035156	2	504.279649	1006.54475	0.77148	0.00038904	-0.96483	-0.00048654	-0.19335	-9.75E-05	504.27898305698096	42.507	0.11103	42.507	42.437	42.548	0					9	6	2	0	0	0	0.37744	1	16093	16093		43.651	10.838	1	73178			7048	1633	3717	3744	7205	7205					0.041734564432204024
DAIRLAVSY	9	Unmodified	_DAIRLAVSY_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.27947998046875	2	504.279649	1006.54475	-0.38682	-0.00019506	-0.24047	-0.00012126	-0.62728	-0.00031633	504.2796451498822	42.426	0.18856	42.426	42.347	42.535	0					8	5	2	0	0	0	0.27123	1	16939	16939		53.089	17.471	1	94079			7049	1633	3717	3744	7206	7206					0.041734564432204024
DAIRLAVSY	9	Unmodified	_DAIRLAVSY_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.279296875	2	504.279649	1006.54475	1.2036	0.00060694	-1.7755	-0.00089534	-0.5719	-0.0002884	504.27862515579136	42.43	0.25678	42.43	42.335	42.592	0					13	7	3	0	0	0	0.15163	1	16934	16934		67.494	23.377	1	132760			7050	1633	3717	3744	7207	7207					0.041734564432204024
DAIRNLHHY	9	Unmodified	_DAIRNLHHY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.1965637207031	3	380.19659	1137.56794	-0.48731	-0.00018527	1.1595	0.00044084	0.67218	0.00025556	380.19697513205693	22.097	0.31551	22.097	22.037	22.353	0					16	6	4	0	0	0	0.25716	1	7307	7307		90.601	37.512	1	1615300			7051	6462	3718	3745	7208	7208					0.004658952805812078
DAIRNLHHY	9	Unmodified	_DAIRNLHHY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.1964416503906	3	380.19659	1137.56794	0.64787	0.00024632	0.46236	0.00017579	1.1102	0.00042211	380.1962625515671	22.14	0.51877	22.14	21.97	22.489	0					28	10	6	0	0	0	0.17854	1	7323	7323		101.25	41.322	1	1720100			7052	6462	3718	3745	7209	7209					0.004658952805812078
DAIRSLASVSY	11	Unmodified	_DAIRSLASVSY_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.311279296875	2	591.311677	1180.6088	3.1793	0.00188	-3.1334	-0.0018528	0.045975	2.7186E-05	591.3102052169958	42.484	0.11293	42.484	42.433	42.545	0					5	3	2	0	0	0	0.46959	1	16962	16962		46.457	5.0302	1	29364			7053	2489	3719	3746	7210	7210					0.025721918095314322
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.2535400390625	2	524.253297	1046.49204	1.4418	0.00075586	-0.18199	-9.5411E-05	1.2598	0.00066045	524.2528797337313	31.031	0.18253	31.031	30.947	31.129	0					15	7	3	0	0	0	0.14578	1	9931	9931		68.846	7.8742	1	166420			7054	10454;9597;9545	3720	3747	7211	7211					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2536010742188	2	524.253297	1046.49204	1.8064	0.00094701	-0.75497	-0.0003958	1.0514	0.00055121	524.2528410154182	31.255	0.29412	31.255	31.169	31.463	0					19	7	4	0	0	0	0.0016668	1	11351	11351		176.44	88.69	1	1491200			7055	10454;9597;9545	3720	3747	7212	7212					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2538452148438	2	524.253297	1046.49204	0.55019	0.00028844	-0.32543	-0.00017061	0.22476	0.00011783	524.2530942329616	31.046	0.2509	31.046	30.95	31.201	0					14	9	2	0	0	0	0.076532	1	10252	10252		85.862	25.458	1	232440			7056	10454;9597;9545	3720	3747	7213	7213					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2536010742188	2	524.253297	1046.49204	1.784	0.00093525	-1.4818	-0.00077685	0.30213	0.00015839	524.2524049531672	31.303	0.39787	31.303	31.174	31.572	0					20	9	4	0	0	0	0.054723	1	11778	11778		93.598	40.661	1	1533800			7057	10454;9597;9545	3720	3747	7214	7214					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2520751953125	2	524.253297	1046.49204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.034	1	31.034	30.534	31.534	0								0	0	0	0.0052769	1	10640	10640		114.89	24.525	1				7058	10454;9597;9545	3720	3747	7215	7215					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.25390625	2	524.253297	1046.49204	1.1387	0.00059699	0.065264	3.4215E-05	1.204	0.00063121	524.2532945122792	31.04	0.22978	31.04	30.946	31.175	0					11	6	3	0	0	0	0.04067	1	10649	10649		98.582	49.14	1	248850			7059	10454;9597;9545	3720	3747	7216	7216					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2537841796875	2	524.253297	1046.49204	-1.2676	-0.00066455	1.8993	0.00099571	0.63168	0.00033116	524.2546029446278	31.029	0.095858	31.029	30.974	31.07	0					4	2	2	0	0	0	0.38666	1	10642	10642		42.864	2.2917	1	74692			7060	10454;9597;9545	3720	3747	7217	7217					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2538452148438	2	524.253297	1046.49204	0.51853	0.00027184	0.77481	0.0004062	1.2933	0.00067804	524.2534535985277	31.233	0.25991	31.233	31.126	31.386	0					14	5	4	0	0	0	0.11411	1	11641	11641		76.17	35.392	1	436820			7061	10454;9597;9545	3720	3747	7218	7218					-0.029345464102334518
DAISKTYSY	9	Unmodified	_DAISKTYSY_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2537841796875	2	524.253297	1046.49204	1.6263	0.00085258	-0.73218	-0.00038385	0.8941	0.00046873	524.252826484843	31.216	0.36105	31.216	31.11	31.471	0					16	7	3	0	0	0	0.011389	1	11657	11657		138.06	61.288	1	1723300			7062	10454;9597;9545	3720	3747	7219	7219					-0.029345464102334518
DAITKAGKEK	10	Unmodified	_DAITKAGKEK_					0	0	0			REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8037719726562	2	530.803488	1059.59242	0.28749	0.0001526	0.60456	0.0003209	0.89205	0.0004735	530.8036952096174	27.594	0.20766	27.594	27.49	27.697	0					9	4	3	0	0	0	0.39827	1	10024	10024		56.434	5.2411	1	343310	+		7063	21777	3721	3748	7220	7220					0.0650111064342127
DAIVGLIVK	9	Unmodified	_DAIVGLIVK_					0	0	0			REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2969665527344	2	464.29731	926.580068	0.72665	0.00033738	-1.0532	-0.00048898	-0.3265	-0.00015159	464.2966916599615	39.413	0.19652	39.413	39.287	39.483	0					8	4	3	0	0	0	0.0792	1	15570	15570		84.916	23.944	1	224400	+		7064	15854	3722	3749	7221	7221					0.1138411897103424
DAKAPVVYS	9	Unmodified	_DAKAPVVYS_					0	0	0			REV__KIT|p.T734A|1|0.17|ENSG00000157404|chr4:54731386-54731386|A/G|missense_variant	REV__KIT|p.T734A|1|0.17|ENSG00000157404|chr4:54731386-54731386|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7510681152344	2	475.2531	948.491647	0.31771	0.00015099	1.5073	0.00071635	1.825	0.00086734	475.25448193549266	35.462	0.38235	35.462	35.268	35.651	0					18	10	3	0	0	0	0.51817	1	13246	13246		30.504	2.6214	1	224110	+		7065	20790	3723	3750	7222	7222					0.01534078660574778
DAKFYAIK	8	Unmodified	_DAKFYAIK_					0	0	0			REV__tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	REV__tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2655334472656	2	478.26601	954.517468	0.65156	0.00031162	-1.2173	-0.00058217	-0.5657	-0.00027055	478.2653937178779	41.167	0.24361	41.167	41.057	41.301	0					16	10	2	0	0	0	0.54629	1	16160	16160		55.504	0.78186	1	275350	+		7066	21677	3724	3751	7223	7223					0.03838972902849491
DAKKQSTKL	9	Unmodified	_DAKKQSTKL_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.79815673828125	2	509.798206	1017.58186	-0.1107	-5.6434E-05	-0.01289	-6.5711E-06	-0.12359	-6.3005E-05	509.79810645437317	14.922	0.078308	14.922	14.875	14.953	0					6	3	2	0	0	0	0.10915	1	3153	3153		77.318	17.199	1	169550			7067	1663	3725	3752	7224	7224					0.07377127988979737
DAKKQSTKL	9	Unmodified	_DAKKQSTKL_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7988586425781	2	509.798206	1017.58186	-0.35218	-0.00017954	0.78616	0.00040078	0.43398	0.00022124	509.7985778553651	14.942	0.053179	14.942	14.919	14.972	0					4	2	2	0	0	0	0.21263	1	3326	3326		60.118	3.6845	1	112030			7068	1663	3725	3752	7225	7225					0.07377127988979737
DAKLAAKYK	9	Unmodified	_DAKLAAKYK_					0	0	0			REV__ENST00000447299.1_1_3:15093950-15094835:-|nuORF	REV__ENST00000447299.1_1_3:15093950-15094835:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.298095703125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.878	1	31.878	31.378	32.378	0								0	0	0	0.29774	1	10598	10598		35.618	2.1027	1		+		7069	14618	3726	3753	7226	7226					0.0781033333993264
DAKVAALR	8	Unmodified	_DAKVAALR_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.25579833984375	2	422.255977	842.497401	-0.33742	-0.00014248	-0.065405	-2.7618E-05	-0.40283	-0.0001701	422.2558977326469	25.221	0.27024	25.221	25.11	25.381	0					10	5	2	0	0	0	0.3049	1	8789	8789		82.241	5.4664	1	4560400			7070	998	3727	3754	7227	7227					0.06985221962895594
DAKWTMFM	8	Unmodified	_DAKWTMFM_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|126|2|sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|126|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2281494140625	2	515.230256	1028.44596	1.1935	0.00061493	-4.0788	-0.0021015	-2.8853	-0.0014866	515.2281939853257	31.88	0.25295	31.88	31.735	31.988	0					13	6	3	0	0	0	0.68432	1	11656	11656		35.618	6.4687	1	80591	+		7071	20733	3728	3755	7228	7228					-0.06712606117685027
DALAAVFQR	9	Unmodified	_DALAAVFQR_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7716979980469	2	495.771991	989.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.933	1	32.933	32.433	33.433	0								0	0	0	0.3304	1	10680	10680		29.15	2.3535	1		+		7072	14100	3729	3756	7229	7229					0.034245896460333825
DALAKAVQY	9	Unmodified	_DALAKAVQY_					0	0	0			REV__nc|ENSG00000205560|Q92523-4|CPT1B	REV__nc|ENSG00000205560|Q92523-4|CPT1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2419128417969	2	489.766374	977.518196	0.57311	0.00028069	-1.2808	-0.00062729	-0.70768	-0.0003466	489.766825942621	25.862	0.27996	25.862	25.75	26.03	0					7	4	2	0	0	0	0.20551	1	8309	8309		60.972	0.67798	1	70184	+		7073	17526	3730	3757	7230	7230					0.02853767551891906
DALALRTP	8	Unmodified	_DALALRTP_					0	0	0			REV__ENST00000448973.6_1_16:684599-685202:-|nuORF	REV__ENST00000448973.6_1_16:684599-685202:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.7484436035156	2	428.747985	855.481417	0.22039	9.4491E-05	-0.048494	-2.0791E-05	0.17189	7.3699E-05	428.7479769835488	20.313	0.1156	20.313	20.239	20.355	0					6	3	2	0	0	0	0.3961	1	5409	5409		71.296	5.4925	1	115460	+		7074	19299	3731	3758	7231	7231					0.047895157259858934
DALALRTP	8	Unmodified	_DALALRTP_					0	0	0			REV__ENST00000448973.6_1_16:684599-685202:-|nuORF	REV__ENST00000448973.6_1_16:684599-685202:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.74810791015625	2	428.747985	855.481417	0.17799	7.6314E-05	0.28252	0.00012113	0.46051	0.00019744	428.7480255499916	20.384	0.18383	20.384	20.279	20.463	0					7	4	2	0	0	0	0.3961	1	5726	5726		71.296	7.9894	1	65074	+		7075	19299	3731	3758	7232	7232					0.047895157259858934
DALDVLDKR	9	Unmodified	_DALDVLDKR_					0	0	0			REV__tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	REV__tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7877807617188	2	522.787838	1043.56112	1.6554	0.00086542	-1.3256	-0.00069299	0.32982	0.00017243	522.78701701985	24.661	0.13588	24.661	24.573	24.709	0					5	3	2	0	0	0	0.17854	1	8324	8324		64.207	0.67341	1	377420	+		7076	22045	3732	3759	7233	7233					0.04108537609317864
DALGPGVVGI	10	Unmodified	_DALGPGVVGI_					0	0	0		ENST00000461320.5_1_1:150239547-150241394:-|nuORF;nc|ENSG00000117362|Q96BI3-3|APH1A;nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	ENST00000461320.5_1_1:150239547-150241394:-|nuORF	ENST00000461320.5_1_1:150239547-150241394:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.2554626464844	2	449.255643	896.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.954	1	41.954	41.454	42.454	0								0	0	0	0.31878	1	15920	15920		47.916	5.5195	1				7077	9731	3733	3760	7234	7234					0.04434382523197655
DALHVKGKY	9	Unmodified	_DALHVKGKY_					0	0	0			REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.78759765625	2	515.787641	1029.56073	-0.07708	-3.9757E-05	0.78302	0.00040387	0.70594	0.00036411	515.7880299499138	23.574	0.43741	23.574	23.395	23.833	0					34	15	3	0	0	0	0.41113	1	7085	7085		40.778	6.6056	1	303350	+		7078	21587	3734	3761	7235	7235					0.047131626801501625
DALHVKGKY	9	Unmodified	_DALHVKGKY_					0	0	0			REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7881469726562	2	515.787641	1029.56073	1.1167	0.000576	-0.53149	-0.00027413	0.58526	0.00030187	515.7873488315633	23.623	0.3824	23.623	23.446	23.828	0					20	9	3	0	0	0	0.30951	1	7213	7213		49.442	5.0644	1	191320	+		7079	21587	3734	3761	7236	7236					0.047131626801501625
DALHVKGKY	9	Unmodified	_DALHVKGKY_					0	0	0			REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7880249023438	2	515.787641	1029.56073	-1.5385	-0.00079356	2.3007	0.0011867	0.76217	0.00039312	515.7886295590973	23.632	0.28501	23.632	23.462	23.747	0					13	7	2	0	0	0	0.33044	1	7237	7237		47.657	12.039	1	83440	+		7080	21587	3734	3761	7237	7237					0.047131626801501625
DALITHVL	8	Unmodified	_DALITHVL_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.F353S|1|0.28|ENSG00000196616|chr4:99310810-99310810|A/G|missense_variant	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.2576904296875	2	441.258185	880.501818	0.72235	0.00031874	-1.5679	-0.00069183	-0.84552	-0.00037309	441.2572802959941	45.589	0.18166	45.589	45.473	45.655	0					10	6	2	0	0	0	0.44433	1	18250	18250		65.803	10.299	1	79789			7081	7385	3735	3762	7238	7238					0.056786863857951175
DALITHVL	8	Unmodified	_DALITHVL_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.F353S|1|0.28|ENSG00000196616|chr4:99310810-99310810|A/G|missense_variant	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.2584228515625	2	441.258185	880.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.578	1	45.578	45.078	46.078	0								0	0	0	1.7419	1	18257	18257		57.811	9.8957	1				7082	7385	3735	3762	7239	7239					0.056786863857951175
DALKTVQAF	9	Unmodified	_DALKTVQAF_					0	0	0		nc|ENSG00000134531|P54849-2|EMP1;ENSG00000134531|ENST00000256951|EMP1	nc|ENSG00000134531|P54849-2|EMP1	nc|ENSG00000134531|P54849-2|EMP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7742004394531	2	496.7742	991.533846	0.76364	0.00037936	0.53649	0.00026652	1.3001	0.00064587	496.7742300748742	39.117	0.21124	39.117	39.015	39.227	0					12	7	3	0	0	0	0.28897	1	15369	15369		51.193	1.6567	1	70350			7083	3924	3736	3763	7240	7240					0.03774054068958321
DALLIHSL	8	Unmodified	_DALLIHSL_					0	0	0		ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.2575378417969	2	441.258185	880.501818	0.52741	0.00023272	-0.7519	-0.00033178	-0.22449	-9.9058E-05	441.2578131105642	45.628	0.15087	45.628	45.547	45.698	0					11	8	2	0	0	0	0.32815	1	17631	17631		79.451	10.664	1	51717			7084	3373	3737	3764	7241	7241					0.056786863857951175
DALLNWLK	8	Unmodified	_DALLNWLK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant;ENST00000481749.5_1_3:138374233-138426144:-|nuORF;ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000051382|ENST00000674063|PIK3CB;ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7811584472656	2	486.779285	971.544017	0.70322	0.00034231	2.2509	0.0010957	2.9542	0.001438	486.780300667673	38.543	0.32462	38.543	38.312	38.636	0					14	11	2	0	0	0	0.43813	1	14643	14643		66.429	5.4573	1	101560			7085	1255;6310	3738	3765	7242	7242					0.0571066179418267
DALLRHLV	8	Unmodified	_DALLRHLV_					0	0	0			REV__ENST00000220062.8_1_15:65345900-65346110:-|nuORF	REV__ENST00000220062.8_1_15:65345900-65346110:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.78472900390625	2	468.784902	935.55525	0.56612	0.00026539	-0.81127	-0.00038031	-0.24515	-0.00011492	468.78453019189277	20.821	0.26772	20.821	20.675	20.943	0					9	5	2	0	0	0	0.64096	1	6696	6696		42.474	3.2216	1	807570	+		7086	17887	3739	3766	7243	7243					0.08489483888320137
DALLRQIR	8	Unmodified	_DALLRQIR_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.8008728027344	2	492.801083	983.587613	0.60671	0.00029899	-2.2534	-0.0011105	-1.6467	-0.0008115	492.79976825070804	22.062	0.41106	22.062	21.858	22.269	0					14	8	3	0	0	0	0.63077	1	7424	7424		44.117	1.7207	1	1856000			7087	2145	3740	3767	7244	7244					0.09516271291317935
DALPRLPVP	9	Unmodified	_DALPRLPVP_					0	0	0		ENST00000464290.5_1_9:131865327-131873452:-|nuORF;nc|ENSG00000095321|P43155-3|CRAT;nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT	ENST00000464290.5_1_9:131865327-131873452:-|nuORF	ENST00000464290.5_1_9:131865327-131873452:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.5306396484375	3	326.530798	976.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.35	1	25.35	24.85	25.85	0								0	0	0	0.34907	1	7621	7621		25.574	3.8883	1				7088	1900	3741	3768	7245	7245					0.08134350685509162
DALRCVNNY	9	Carbamidomethyl (C)	_DALRC(Carbamidomethyl (C))VNNY_	DALRC(1)VNNY		DALRC(80)VNNY		0	1	0		ENSG00000143155|ENST00000367833|TIPRL;TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.7633056640625	2	562.761297	1123.50804	1.4409	0.00081087	-0.87351	-0.00049158	0.56736	0.00031929	562.761046892734	30.235	0.13738	30.235	30.166	30.303	0					10	4	3	0	0	0	0.098791	1	9607	9607		79.713	13.283	1	76253			7089	4527	3742	3769	7246	7246	192				-0.048771634449849444
DALRCVNNY	9	Carbamidomethyl (C)	_DALRC(Carbamidomethyl (C))VNNY_	DALRC(1)VNNY		DALRC(100)VNNY		0	1	0		ENSG00000143155|ENST00000367833|TIPRL;TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7620239257812	2	562.761297	1123.50804	1.7846	0.0010043	-1.6396	-0.00092272	0.14497	8.1582E-05	562.760520499895	30.489	0.21888	30.489	30.405	30.624	0					17	5	4	0	0	0	0.037924	1	10989	10989		101.25	48.316	1	732890			7090	4527	3742	3769	7247	7247	192				-0.048771634449849444
DALRCVNNY	9	Carbamidomethyl (C)	_DALRC(Carbamidomethyl (C))VNNY_	DALRC(1)VNNY		DALRC(91)VNNY		0	1	0		ENSG00000143155|ENST00000367833|TIPRL;TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.7614135742188	2	562.761297	1123.50804	0.13128	7.3879E-05	0.38238	0.00021519	0.51366	0.00028907	562.7617076310453	30.283	0.22876	30.283	30.193	30.422	0					19	7	4	0	0	0	0.063171	1	9919	9919		90.601	32.371	1	472010			7091	4527	3742	3769	7248	7248	192				-0.048771634449849444
DALRCVNNY	9	Carbamidomethyl (C)	_DALRC(Carbamidomethyl (C))VNNY_	DALRC(1)VNNY		DALRC(91)VNNY		0	1	0		ENSG00000143155|ENST00000367833|TIPRL;TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7615356445312	2	562.761297	1123.50804	1.8639	0.0010489	-1.4419	-0.00081143	0.42199	0.00023748	562.7605415020621	30.505	0.29348	30.505	30.4	30.694	0					16	6	4	0	0	0	0.063171	1	11420	11420		90.601	40.576	1	1971100			7092	4527	3742	3769	7249	7249	192				-0.048771634449849444
DALRCVNNY	9	Carbamidomethyl (C)	_DALRC(Carbamidomethyl (C))VNNY_	DALRC(1)VNNY		DALRC(71)VNNY		0	1	0		ENSG00000143155|ENST00000367833|TIPRL;TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7615966796875	2	562.761297	1123.50804	0.93119	0.00052404	-0.39954	-0.00022485	0.53165	0.00029919	562.7613666185662	30.294	0.21758	30.294	30.186	30.403	0					11	5	3	0	0	0	0.13726	1	10289	10289		70.816	12.586	1	374180			7093	4527	3742	3769	7250	7250	192				-0.048771634449849444
DALRCVNNY	9	Carbamidomethyl (C)	_DALRC(Carbamidomethyl (C))VNNY_	DALRC(1)VNNY		DALRC(91)VNNY		0	1	0		ENSG00000143155|ENST00000367833|TIPRL;TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7616577148438	2	562.761297	1123.50804	1.7702	0.00099619	-1.3688	-0.00077031	0.40137	0.00022588	562.7604851945681	30.438	0.55616	30.438	30.325	30.881	0					24	11	3	0	0	0	0.063171	1	11276	11276		90.601	44.629	1	1877600			7094	4527	3742	3769	7251	7251	192				-0.048771634449849444
DALRLLQT	8	Unmodified	_DALRLLQT_					0	0	0		nc|ENSG00000136522|Q9HD33-3|MRPL47;nc|ENSG00000136522|Q9HD33-2|MRPL47;ENSG00000136522|ENST00000476781|MRPL47	nc|ENSG00000136522|Q9HD33-3|MRPL47	nc|ENSG00000136522|Q9HD33-3|MRPL47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2740478515625	2	465.274367	928.53418	0.076536	3.561E-05	-0.057601	-2.68E-05	0.018934	8.8096E-06	465.2742606302662	15.453	0.20395	15.453	15.354	15.557	0					14	8	2	0	0	0	0.58597	1	3352	3352		51.335	3.6781	1	139450			7095	4087	3743	3770	7252	7252					0.06705473788792915
DALRRLRA	8	Unmodified	_DALRRLRA_					0	0	0		ENST00000585386.1_1_19:46145287-46148597:-|nuORF;nc|ENSG00000125746|O95834-2|EML2;nc|ENSG00000125746|O95834-3|EML2	ENST00000585386.1_1_19:46145287-46148597:-|nuORF	ENST00000585386.1_1_19:46145287-46148597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.79998779296875	2	485.798875	969.583196	2.5049	0.0012169	0.17903	8.6972E-05	2.6839	0.0013039	485.7990008409795	39.822	0.62216	39.822	39.673	40.295	0					39	14	4	0	0	0	0.60719	1	15757	15757		47.916	1.9636	1	2106000			7096	10894	3744	3771	7253	7253					0.09718806868420415
DALSRIREA	9	Unmodified	_DALSRIREA_					0	0	0			REV__LAMB2|p.V1563I|1|0.19|ENSG00000172037|chr3:49122257-49122257|C/T|missense_variant	REV__LAMB2|p.V1563I|1|0.19|ENSG00000172037|chr3:49122257-49122257|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.1927490234375	3	344.192845	1029.55671	0.68171	0.00023464	-0.76815	-0.00026439	-0.086441	-2.9752E-05	344.1925341078661	24.394	0.193	24.394	24.309	24.502	0					8	4	2	0	0	0	0.48389	1	8231	8231		34.173	2.6427	1	358180	+		7097	20834	3745	3772	7254	7254					0.04311073186431713
DALSTFLVK	9	Unmodified	_DALSTFLVK_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2846984863281	2	497.2844	992.554247	0.55556	0.00027627	0.23171	0.00011523	0.78727	0.0003915	497.2845027109054	40.009	0.22806	40.009	39.924	40.153	0					17	8	3	0	0	0	0.35021	1	15227	15227		45.972	5.1941	1	181030	+		7098	14609	3746	3773	7255	7255					0.05767224728754172
DALSTFLVK	9	Unmodified	_DALSTFLVK_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.28411865234375	2	497.2844	992.554247	-0.70699	-0.00035158	0.49803	0.00024766	-0.20897	-0.00010392	497.28437252615805	39.934	0.36748	39.934	39.796	40.164	0					23	8	4	0	0	0	0.22377	1	15808	15808		58.782	3.2778	1	2176600	+		7099	14609	3746	3773	7256	7256					0.05767224728754172
DALTVWILS	9	Unmodified	_DALTVWILS_					0	0	0		ENST00000436129.2_1_20:60551226-60583162:-|nuORF	ENST00000436129.2_1_20:60551226-60583162:-|nuORF	ENST00000436129.2_1_20:60551226-60583162:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.28314208984375	2	509.2844	1016.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.731	1	21.731	21.231	22.231	0								0	0	0	0.29774	1	6031	6031		35.618	0.46626	1				7100	9529	3747	3774	7257	7257					0.04663224728756177
DALVITHY	8	Unmodified	_DALVITHY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.24737548828125	2	466.247818	930.481082	0.061805	2.8816E-05	0.06743	3.1439E-05	0.12924	6.0256E-05	466.2478079428218	37.853	0.28313	37.853	37.721	38.004	0					35	16	3	0	0	0	0.29152	1	12354	12354		85.359	32.008	1	449290			7101	2596	3748	3775	7258	7258					0.013060960061238802
DALVITHY	8	Unmodified	_DALVITHY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.24749755859375	2	466.247818	930.481082	-0.13495	-6.2919E-05	-0.48434	-0.00022582	-0.61929	-0.00028874	466.24753980026924	38.137	0.38686	38.137	37.99	38.377	0					35	13	4	0	0	0	0.24061	1	14936	14936		148.21	62.847	1	1424200			7102	2596	3748	3775	7259	7259					0.013060960061238802
DALVITHY	8	Unmodified	_DALVITHY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2472229003906	2	466.247818	930.481082	0.6655	0.00031029	-1.2818	-0.00059765	-0.61632	-0.00028736	466.24723001013376	38.143	0.26975	38.143	38.012	38.282	0					16	9	2	0	0	0	0.25485	1	14934	14934		97.473	37.179	1	262980			7103	2596	3748	3775	7260	7260					0.013060960061238802
DALVITHY	8	Unmodified	_DALVITHY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7489013671875	2	466.247818	930.481082	-0.18043	-8.4124E-05	0.30507	0.00014224	0.12465	5.8116E-05	466.2479044512846	37.911	0.28701	37.911	37.808	38.095	0					28	14	3	0	0	0	0.30437	1	13541	13541		82.305	34.389	1	465510			7104	2596	3748	3775	7261	7261					0.013060960061238802
DALVITHY	8	Unmodified	_DALVITHY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2479553222656	2	466.247818	930.481082	-0.62188	-0.00028995	0.18552	8.6496E-05	-0.43637	-0.00020346	466.2478445218318	37.902	0.29033	37.902	37.799	38.09	0					32	14	3	0	0	0	0.30437	1	13546	13546		82.305	28.954	1	442170			7105	2596	3748	3775	7262	7262					0.013060960061238802
DALVITHY	8	Unmodified	_DALVITHY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.24786376953125	2	466.247818	930.481082	-0.49896	-0.00023264	-0.050554	-2.357E-05	-0.54952	-0.00025621	466.24773923867684	38.095	0.482	38.095	37.852	38.334	0					29	10	4	0	0	0	0.24714	1	14911	14911		106.42	35.12	1	2730100			7106	2596	3748	3775	7263	7263					0.013060960061238802
DALVITHY	8	Unmodified	_DALVITHY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2475891113281	2	466.247818	930.481082	0.65395	0.0003049	-1.0202	-0.00047565	-0.36622	-0.00017075	466.2473400406523	38.031	0.48097	38.031	37.837	38.317	0					23	10	3	0	0	0	0.24061	1	14927	14927		148.21	76.828	1	1749600			7107	2596	3748	3775	7264	7264					0.013060960061238802
DALVMLDTVL	10	Unmodified	_DALVMLDTVL_					0	0	0			REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.869384765625	3	363.866859	1088.57875	3.1352	0.0011408	3.4207	0.0012447	6.5559	0.0023855	363.8680225037138	27.178	0.47272	27.178	27.07	27.543	0					13	9	2	0	0	0	0.50881	1	9712	9712		44.377	1.5129	1	454220	+		7108	14861	3749	3776	7265	7265					0.03800116819957111
DALVQSLMI	9	Oxidation (M)	_DALVQSLM(Oxidation (M))I_		DALVQSLM(1)I		DALVQSLM(70)I	0	0	1		OR7G1|p.V163I|1|0.13|ENSG00000161807|chr19:9115277-9115277|C/T|missense_variant	OR7G1|p.V163I|1|0.13|ENSG00000161807|chr19:9115277-9115277|C/T|missense_variant	OR7G1|p.V163I|1|0.13|ENSG00000161807|chr19:9115277-9115277|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2679748535156	2	503.267893	1004.52123	-0.87816	-0.00044195	0.5317	0.00026759	-0.34646	-0.00017436	503.2682504443366	31.164	0.17001	31.164	31.112	31.282	0					15	6	3	0	0	0	0.1424	1	10312	10312		69.628	9.5094	1	268040			7109	11884	3750	3777	7266	7266		467			0.01915274614395912
DAMSLVEGIVL	11	Unmodified	_DAMSLVEGIVL_					0	0	0			REV__nc|ENSG00000153093|Q9NUZ1-3|ACOXL	REV__nc|ENSG00000153093|Q9NUZ1-3|ACOXL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.8730163574219	3	382.874014	1145.60021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.295	1	17.295	16.795	17.795	0								0	0	0	0.42918	1	4854	4854		30.569	0.25114	1		+		7110	15531	3751	3778	7267	7267					0.033235018486720946
DANAFVSAVR	10	Unmodified	_DANAFVSAVR_					0	0	0			REV__nc|ENSG00000163939|Q86U86-5|PBRM1	REV__nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2728271484375	2	525.272355	1048.53016	1.7749	0.00093233	-0.96691	-0.00050789	0.80803	0.00042443	525.2717938347658	27.906	0.26533	27.906	27.747	28.012	0					14	5	4	0	0	0	0.36476	1	10178	10178		60.118	1.8883	1	1142400	+		7111	15940	3752	3779	7268	7268					0.00783384295095857
DANICYLVC	9	2 Carbamidomethyl (C)	_DANIC(Carbamidomethyl (C))YLVC(Carbamidomethyl (C))_	DANIC(1)YLVC(1)		DANIC(59)YLVC(59)		0	2	0		ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENST00000523334.1_1_6:114270238-114277280:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.2485961914062	2	564.246634	1126.47872	1.7379	0.00098058	1.4139	0.00079776	3.1517	0.0017783	564.247540474218	25.053	0.166	25.053	24.996	25.162	0					7	3	3	0	0	0	0.22377	1	8737	8737		58.782	7.5893	1	849190			7112	10335	3753	3780	7269	7269	416;417				-0.07946443785453994
DANPETHAF	9	Unmodified	_DANPETHAF_					0	0	0		ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2205505371094	2	501.219788	1000.42502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.81	1	27.81	27.31	28.31	0								0	0	0	0.13137	1	8618	8618		64.207	9.3127	1				7113	2023	3754	3781	7270	7270					-0.07517156901326416
DANPETHAF	9	Unmodified	_DANPETHAF_					0	0	0		ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2191467285156	2	501.219788	1000.42502	-0.97197	-0.00048717	0.64894	0.00032526	-0.32303	-0.00016191	501.2199472895705	27.873	0.26042	27.873	27.706	27.966	0					16	9	2	0	0	0	0.22837	1	8914	8914		58.23	21.071	1	122480			7114	2023	3754	3781	7271	7271					-0.07517156901326416
DANPETHAF	9	Unmodified	_DANPETHAF_					0	0	0		ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2195739746094	2	501.219788	1000.42502	0.93796	0.00047012	-1.112	-0.00055734	-0.17401	-8.7217E-05	501.2192757471494	28.132	0.4343	28.132	27.897	28.331	0					24	9	4	0	0	0	0.25761	1	10263	10263		54.722	16.911	1	740440			7115	2023	3754	3781	7272	7272					-0.07517156901326416
DANPETHAF	9	Unmodified	_DANPETHAF_					0	0	0		ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.219482421875	2	501.219788	1000.42502	1.1179	0.00056033	-1.2249	-0.00061395	-0.10698	-5.3621E-05	501.21914660838473	28.046	0.3654	28.046	27.846	28.211	0					19	7	3	0	0	0	0.25716	1	10107	10107		54.776	8.8041	1	716680			7116	2023	3754	3781	7273	7273					-0.07517156901326416
DANPFKEKV	9	Unmodified	_DANPFKEKV_					0	0	0			REV__tr|U7SSU1|U7SSU1_FUSNUL-serineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01494PE=3SV=1	REV__tr|U7SSU1|U7SSU1_FUSNUL-serineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01494PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2775268554688	2	524.277106	1046.53966	0.09261	4.8553E-05	0.14828	7.7739E-05	0.24089	0.00012629	524.2772108743719	19.201	0.52851	19.201	18.913	19.441	0					37	12	4	0	0	0	0.13267	1	5701	5701		71.877	71.877	1	4025700	+		7117	21882	3755	3782	7274	7274					0.01825152580613576
DANRQISEY	9	Unmodified	_DANRQISEY_					0	0	0		nc|ENSG00000093167|Q9Y608-3|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;LRRFIP2|p.V671Sfs*2|1|0.12|ENSG00000093167|chr3:37054455-37054456|-/T|frameshift_variant;ENSG00000093167|ENST00000336686|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.25634765625	2	548.256902	1094.49925	0.40507	0.00022208	0.31257	0.00017137	0.71764	0.00039345	548.2570066916595	26.301	0.20597	26.301	26.21	26.416	0					10	6	2	0	0	0	0.15163	1	8234	8234		67.494	10.773	1	92549			7118	1885	3756	3783	7275	7275					-0.04421813809813102
DANRQISEY	9	Unmodified	_DANRQISEY_					0	0	0		nc|ENSG00000093167|Q9Y608-3|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;LRRFIP2|p.V671Sfs*2|1|0.12|ENSG00000093167|chr3:37054455-37054456|-/T|frameshift_variant;ENSG00000093167|ENST00000336686|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2572631835938	2	548.256902	1094.49925	1.7835	0.0009778	-1.3473	-0.00073864	0.43622	0.00023916	548.2562891714628	26.568	0.26699	26.568	26.46	26.727	0					17	5	5	0	0	0	0.10506	1	9538	9538		78.264	35.789	1	901890			7119	1885	3756	3783	7276	7276					-0.04421813809813102
DANRQISEY	9	Unmodified	_DANRQISEY_					0	0	0		nc|ENSG00000093167|Q9Y608-3|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;LRRFIP2|p.V671Sfs*2|1|0.12|ENSG00000093167|chr3:37054455-37054456|-/T|frameshift_variant;ENSG00000093167|ENST00000336686|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.25732421875	2	548.256902	1094.49925	1.1559	0.00063374	0.083561	4.5813E-05	1.2395	0.00067955	548.256998677927	26.387	0.14986	26.387	26.289	26.439	0					7	3	3	0	0	0	0.10915	1	8483	8483		77.318	20.597	1	100690			7120	1885	3756	3783	7277	7277					-0.04421813809813102
DANRQISEY	9	Unmodified	_DANRQISEY_					0	0	0		nc|ENSG00000093167|Q9Y608-3|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;LRRFIP2|p.V671Sfs*2|1|0.12|ENSG00000093167|chr3:37054455-37054456|-/T|frameshift_variant;ENSG00000093167|ENST00000336686|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	nc|ENSG00000093167|Q9Y608-3|LRRFIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2569580078125	2	548.256902	1094.49925	1.8659	0.001023	-1.3662	-0.00074905	0.49969	0.00027396	548.256275682926	26.494	0.37212	26.494	26.282	26.654	0					14	7	4	0	0	0	0.056004	1	9381	9381		93.143	40.844	1	709200			7121	1885	3756	3783	7278	7278					-0.04421813809813102
DAPCPLGED	9	Unmodified	_DAPCPLGED_					0	0	0		nc|ENSG00000197467|Q5TAT6-10|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	nc|ENSG00000197467|Q5TAT6-10|COL13A1	nc|ENSG00000197467|Q5TAT6-10|COL13A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.6895751953125	2	458.689475	915.364398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.777	1	18.777	18.277	19.277	0								0	0	0	0.3304	1	5554	5554		29.15	0	1				7122	7464	3757	3784	7279	7279					-0.09667010275916255
DAPGPREREQ	10	Unmodified	_DAPGPREREQ_					0	0	0			REV__MORN1|p.E226Gfs*45|1|0.04|ENSG00000116151|chr1:2372548-2372549|TT/-|frameshift_variant	REV__MORN1|p.E226Gfs*45|1|0.04|ENSG00000116151|chr1:2372548-2372549|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.78173828125	2	577.781076	1153.5476	-0.067023	-3.8725E-05	0.010709	6.1872E-06	-0.056314	-3.2537E-05	577.7818806412025	11.583	0.13908	11.583	11.514	11.653	0					10	5	3	0	0	0	0.73697	1	2267	2267		15.642	4.1308	1	159650	+		7123	20891	3758	3785	7280	7280					-0.023033201699263373
DAPLLPPRV	9	Unmodified	_DAPLLPPRV_					0	0	0		nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3	nc|ENSG00000150471|Q9HAR2|ADGRL3	nc|ENSG00000150471|Q9HAR2|ADGRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.29229736328125	2	489.292559	976.570566	-0.033423	-1.6354E-05	-0.30245	-0.00014799	-0.33588	-0.00016434	489.29239671706506	25.266	0.31806	25.266	25.044	25.362	0					15	9	3	0	0	0	0.53083	1	7589	7589		29.15	4.9468	1	141930			7124	4924	3759	3786	7281	7281					0.0813435068552053
DAPLLPPRV	9	Unmodified	_DAPLLPPRV_					0	0	0		nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3	nc|ENSG00000150471|Q9HAR2|ADGRL3	nc|ENSG00000150471|Q9HAR2|ADGRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2926330566406	2	489.292559	976.570566	-1.2525	-0.00061285	0.95213	0.00046587	-0.30039	-0.00014698	489.29298050465195	25.295	0.36181	25.295	25.094	25.456	0					28	12	3	0	0	0	0.39215	1	7867	7867		42.396	5.237	1	427600			7125	4924	3759	3786	7282	7282					0.0813435068552053
DAPLRLQG	8	Unmodified	_DAPLRLQG_					0	0	0			REV__ENSG00000153395|ENST00000283415|LPCAT1	REV__ENSG00000153395|ENST00000283415|LPCAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2454833984375	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.742	1	21.742	21.242	22.242	0								0	0	0	1.7419	1	6357	6357		38.806	3.1879	1		+		7126	15542	3760	3787	7283	7283					0.037166315832337204
DAPSGLQLAGL	11	Unmodified	_DAPSGLQLAGL_					0	0	0		RUFY4|p.Q231L|1|0.28|ENSG00000188282|chr2:218075184-218075184|A/T|missense_variant	RUFY4|p.Q231L|1|0.28|ENSG00000188282|chr2:218075184-218075184|A/T|missense_variant	RUFY4|p.Q231L|1|0.28|ENSG00000188282|chr2:218075184-218075184|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.282470703125	2	521.282389	1040.55022	0.3364	0.00017536	0.34929	0.00018208	0.68569	0.00035744	521.2825232937004	30.576	0.5726	30.576	30.383	30.956	0					58	20	4	0	0	0	0.575	1	10162	10162		38.754	7.1193	1	1171000			7127	22367	3761	3788	7284	7284					0.031571352350511006
DAPVDDLTRK	10	Unmodified	_DAPVDDLTRK_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.1994323730469	3	377.199777	1128.5775	-0.12849	-4.8467E-05	-0.63561	-0.00023975	-0.7641	-0.00028822	377.1994185535501	26.695	0.19691	26.695	26.639	26.836	0					11	4	3	0	0	0	0.66185	1	8646	8646		25.126	0	1	506970			7128	2409	3762	3789	7285	7285					0.01835618775430703
DAPVRVVRL	9	Unmodified	_DAPVRVVRL_					0	0	0			REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.816650390625	2	512.816733	1023.61891	-0.06174	-3.1661E-05	1.1272	0.00057803	1.0654	0.00054637	512.8173105816186	16.748	0.094772	16.748	16.683	16.778	0					5	3	2	0	0	0	0.35045	1	3868	3868		45.952	28.587	1	91910	+		7129	14134	3763	3790	7286	7286					0.10804844325434715
DAQITLPR	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DAQITLPR_					1	0	0		ENSG00000152580|ENST00000282466|IGSF10;IGSF10|p.M465T|1|0.38|ENSG00000152580|chr3:151448587-151448587|A/G|missense_variant;IGSF10|p.S1050Afs*12|1|0.27|ENSG00000152580|chr3:151446833-151446833|T/-|frameshift_variant;IGSF10|p.R1021Gfs*41|1|0.13|ENSG00000152580|chr3:151446921-151446921|C/-|frameshift_variant;IGSF10|p.N1400Tfs*18|1|0.29|ENSG00000152580|chr3:151445782-151445782|T/-|frameshift_variant;IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant;IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2638854980469	2	478.263999	954.513445	-0.28871	-0.00013808	-0.88053	-0.00042113	-1.1692	-0.00055921	478.2639242375347	19.255	0.15294	19.255	19.155	19.308	0					5	3	2	0	0	0	0.53424	1	5791	5791		56.721	7.2795	1	364110			7130	5019	3764	3791	7287	7287					0.03436883409131042
DAQKAYIM	8	Unmodified	_DAQKAYIM_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2;STRIP2|p.Y154Ifs*25|1|0.03|ENSG00000128578|chr7:129453276-129453277|-/ATCT|frameshift_variant	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.234130859375	2	470.233853	938.453153	0.17468	8.2139E-05	-0.64323	-0.00030247	-0.46855	-0.00022033	470.23365972698235	31.753	0.21623	31.753	31.654	31.871	0					8	5	2	0	0	0	0.5676	1	11599	11599		53.351	5.4358	1	89979			7131	3549	3765	3792	7288	7288					-0.018535502456188624
DAQKAYIM	8	Unmodified	_DAQKAYIM_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2;STRIP2|p.Y154Ifs*25|1|0.03|ENSG00000128578|chr7:129453276-129453277|-/ATCT|frameshift_variant	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2333679199219	2	470.233853	938.453153	-0.12535	-5.8946E-05	-0.72201	-0.00033951	-0.84736	-0.00039846	470.23352563225046	31.799	0.30637	31.799	31.622	31.928	0					10	6	2	0	0	0	0.51384	1	12003	12003		58.782	5.4305	1	82953			7132	3549	3765	3792	7289	7289					-0.018535502456188624
DARGFRGV	8	Unmodified	_DARGFRGV_					0	0	0		ENST00000527295.5_1_11:405898-406649:-|nuORF	ENST00000527295.5_1_11:405898-406649:-|nuORF	ENST00000527295.5_1_11:405898-406649:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2344055175781	2	439.235576	876.456599	0.26895	0.00011813	-2.8363	-0.0012458	-2.5673	-0.0011277	439.23425758184266	19.856	0.11023	19.856	19.802	19.912	0					5	3	2	0	0	0	0.70055	1	5233	5233		33.516	1.5607	1	68600			7133	10387	3766	3793	7290	7290					0.013428806432898455
DARGLLALR	9	Unmodified	_DARGLLALR_					0	0	0		ENSG00000173868|ENST00000310544|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-2|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-3|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.8007507324219	2	492.801083	983.587613	-1.2659	-0.00062385	0.56861	0.00028021	-0.69731	-0.00034364	492.8011684162108	21.859	0.14601	21.859	21.781	21.927	0					9	4	3	0	0	0	0.40353	1	6351	6351		41.427	9.8968	1	209480			7134	6455	3767	3794	7291	7291					0.09516271291317935
DARRGLGVR	9	Unmodified	_DARRGLGVR_					0	0	0			REV__ENST00000226230.7_1_17:26646143-26652544:+|nuORF	REV__ENST00000226230.7_1_17:26646143-26652544:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.86956787109375	3	333.865063	998.57336	3.0099	0.0010049	-2.5191	-0.00084104	0.49083	0.00016387	333.86422265455474	14.737	0.16657	14.737	14.677	14.844	0					6	3	2	0	0	0	0.5879	1	3720	3720		23.523	7.0495	1	179400	+		7135	17901	3768	3795	7292	7292					0.07401618863036674
DASALPPPVG	10	Unmodified	_DASALPPPVG_					0	0	0		ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant;ENSG00000174282|ENST00000380599|ZBTB4	ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2455139160156	2	462.245275	922.475997	0.74367	0.00034376	-0.66387	-0.00030687	0.079802	3.6888E-05	462.24496040393836	27.621	0.33105	27.621	27.411	27.742	0					25	10	3	0	0	0	0.40673	1	8498	8498		55.504	7.8469	1	362620			7136	6480	3769	3796	7293	7293					0.011657921435357821
DASATAILK	9	Unmodified	_DASATAILK_					0	0	0			REV__nc|ENSG00000123977|Q8N136-2|DAW1	REV__nc|ENSG00000123977|Q8N136-2|DAW1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.25286865234375	2	445.2531	888.491647	-0.4611	-0.0002053	0.12716	5.6617E-05	-0.33394	-0.00014869	445.2531274933626	27.365	0.22045	27.365	27.255	27.476	0					9	4	3	0	0	0	0.0792	1	9799	9799		84.916	10.66	1	445070	+		7137	14370	3770	3797	7294	7294					0.0429407866058682
DASDPILW	8	Unmodified	_DASDPILW_					0	0	0			REV__nc|ENSG00000213918|P24855-2|DNASE1	REV__nc|ENSG00000213918|P24855-2|DNASE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.72845458984375	2	458.724175	915.433798	4.2981	0.0019716	3.5049	0.0016078	7.803	0.0035794	458.7257661777918	16.023	0.17024	16.023	15.915	16.085	0					11	6	2	0	0	0	0.64096	1	3756	3756		42.474	5.3154	1	69256	+		7138	16225	3771	3798	7295	7295					-0.027301832648504387
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.2241516113281	2	470.224539	938.434526	0.0048006	2.2574E-06	-0.023336	-1.0973E-05	-0.018536	-8.7159E-06	470.2241479863788	28.368	0.27166	28.368	28.248	28.52	0					23	9	3	0	0	0	0.070005	1	8836	8836		88.177	8.4643	1	270490			7139	331	3772	3799	7296	7296					-0.03715388615819393
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2239685058594	2	470.224539	938.434526	0.17366	8.1658E-05	0.14789	6.9543E-05	0.32155	0.0001512	470.22407182713664	28.606	0.53314	28.606	28.368	28.902	0					28	13	3	0	0	0	0.011389	1	10121	10121		138.06	36.462	1	2058900			7140	331	3772	3799	7297	7297					-0.03715388615819393
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2245178222656	2	470.224539	938.434526	-1.2678	-0.00059614	2.1866	0.0010282	0.91878	0.00043203	470.22556505732217	28.38	0.23685	28.38	28.262	28.499	0					21	8	3	0	0	0	0.070005	1	9126	9126		88.177	18.549	1	405950			7141	331	3772	3799	7298	7298					-0.03715388615819393
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2239990234375	2	470.224539	938.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.659	1	28.659	28.159	29.159	0								0	0	0	0.24544	1	10526	10526		44.377	1.981	1				7142	331	3772	3799	7299	7299					-0.03715388615819393
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.224609375	2	470.224539	938.434526	0.6089	0.00028632	-0.39835	-0.00018731	0.21056	9.9009E-05	470.2242943519383	28.62	0.36262	28.62	28.515	28.878	0					24	7	4	0	0	0	0.003936	1	10518	10518		163.15	37.337	1	2368600			7143	331	3772	3799	7300	7300					-0.03715388615819393
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.22418212890625	2	470.224539	938.434526	-0.62508	-0.00029393	0.41684	0.00019601	-0.20824	-9.7919E-05	470.22446928012295	28.408	0.32536	28.408	28.325	28.651	0					15	8	3	0	0	0	0.037924	1	9416	9416		101.25	21.54	1	374410			7144	331	3772	3799	7301	7301					-0.03715388615819393
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.22412109375	2	470.224539	938.434526	-0.53766	-0.00025282	1.5179	0.00071375	0.98022	0.00046092	470.22446466477766	28.567	0.61434	28.567	28.311	28.925	0					30	12	4	0	0	0	0.011389	1	10356	10356		138.06	24.651	1	1450900			7145	331	3772	3799	7302	7302					-0.03715388615819393
DASGAKLDY	9	Unmodified	_DASGAKLDY_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.22418212890625	2	470.224539	938.434526	0.52887	0.00024869	-0.60493	-0.00028445	-0.076062	-3.5766E-05	470.22403116967297	28.599	0.36598	28.599	28.443	28.809	0					20	7	3	0	0	0	0.0088974	1	10367	10367		143.37	41.773	1	2089000			7146	331	3772	3799	7303	7303					-0.03715388615819393
DASKLTYIY	9	Unmodified	_DASKLTYIY_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2803955078125	2	537.279315	1072.54408	1.8744	0.0010071	-1.3426	-0.00072136	0.53178	0.00028571	537.278589365375	41.416	0.29563	41.416	41.317	41.613	0					25	12	3	0	0	0	0.27249	1	16259	16259		52.937	1.6012	1	371550			7147	9131	3773	3800	7304	7304					0.010706170035064133
DASKVVTVF	9	Unmodified	_DASKVVTVF_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2688903808594	2	483.26875	964.522947	0.032182	1.5553E-05	-0.36542	-0.0001766	-0.33324	-0.00016104	483.26851001335723	40.214	0.61149	40.214	40.016	40.628	0					91	36	5	0	0	0	0.01942	1	13000	13000		117.81	13.754	1	4337000			7148	1469	3774	3801	7305	7305					0.03926651694678185
DASKVVTVF	9	Unmodified	_DASKVVTVF_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2686462402344	2	483.26875	964.522947	-0.15203	-7.3472E-05	0.63224	0.00030554	0.48021	0.00023207	483.269072406481	40.561	0.45626	40.561	40.325	40.781	0					43	19	3	0	0	0	0.046074	1	15443	15443		101.25	5.4375	1	1830300			7149	1469	3774	3801	7306	7306					0.03926651694678185
DASKVVTVF	9	Unmodified	_DASKVVTVF_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2685852050781	2	483.26875	964.522947	0.67852	0.00032791	-1.1938	-0.00057695	-0.51533	-0.00024904	483.2682420728701	40.543	0.90402	40.543	40.362	41.266	0					112	32	5	0	0	0	0.026656	2	15940	15940;16073		117.81	24.668	1	30046000			7150	1469	3774	3801	7307;7308	7307					0.03926651694678185
DASKVVTVF	9	Unmodified	_DASKVVTVF_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2694396972656	2	483.26875	964.522947	0.22258	0.00010756	-0.53667	-0.00025936	-0.31409	-0.00015179	483.2685004378641	40.302	0.37328	40.302	40.196	40.57	0					51	20	4	0	0	0	0.058553	1	14312	14312		96.034	2.8904	1	712080			7151	1469	3774	3801	7309	7309					0.03926651694678185
DASKVVTVF	9	Unmodified	_DASKVVTVF_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2690734863281	2	483.26875	964.522947	-0.27172	-0.00013132	-0.11056	-5.343E-05	-0.38228	-0.00018475	483.2686398877371	40.318	0.68689	40.318	40.079	40.766	0					104	37	5	0	0	0	0.037098	1	14300	14300		106.68	13.54	1	4702500			7152	1469	3774	3801	7310	7310					0.03926651694678185
DASKVVTVF	9	Unmodified	_DASKVVTVF_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2685852050781	2	483.26875	964.522947	-0.59846	-0.00028921	0.11293	5.4575E-05	-0.48553	-0.00023464	483.2687347039299	40.461	0.77993	40.461	40.268	41.047	0					41	15	5	0	0	0	0.01942	1	16054	16054		117.81	13.754	1	6798600			7153	1469	3774	3801	7311	7311					0.03926651694678185
DASKVVTVF	9	Unmodified	_DASKVVTVF_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2683410644531	2	483.26875	964.522947	0.88125	0.00042588	-1.1545	-0.00055795	-0.27328	-0.00013207	483.26825758828073	40.495	1.0286	40.495	40.342	41.371	0					36	21	2	0	0	0	0.026656	1	16114	16114		117.81	13.754	1	30856000			7154	1469	3774	3801	7312	7312					0.03926651694678185
DASLKTYLY	9	Unmodified	_DASLKTYLY_					0	0	0		TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232;ENST00000515518.6_1_5:109760554-109978041:-|nuORF	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.280029296875	2	537.279315	1072.54408	0.74392	0.00039969	0.11226	6.0315E-05	0.85618	0.00046001	537.2794489466984	41.076	0.15059	41.076	41.018	41.169	0					13	9	2	0	0	0	0.25716	1	13199	13199		54.776	0	1	59754			7155	7174	3775	3802	7313	7313					0.010706170035291507
DASLKTYLY	9	Unmodified	_DASLKTYLY_					0	0	0		TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232;ENST00000515518.6_1_5:109760554-109978041:-|nuORF	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.279541015625	2	537.279315	1072.54408	0.21398	0.00011497	0.27777	0.00014924	0.49175	0.00026421	537.2793851023885	41.421	0.27419	41.421	41.346	41.62	0					30	13	3	0	0	0	0.13267	1	15726	15726		71.877	0	1	317630			7156	7174	3775	3802	7314	7314					0.010706170035291507
DASLKTYLY	9	Unmodified	_DASLKTYLY_					0	0	0		TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232;ENST00000515518.6_1_5:109760554-109978041:-|nuORF	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2798461914062	2	537.279315	1072.54408	-0.37522	-0.0002016	1.3722	0.00073725	0.99698	0.00053566	537.2802343370886	41.203	0.13727	41.203	41.145	41.283	0					11	8	2	0	0	0	0.38666	1	13705	13705		42.864	5.0528	1	55745			7157	7174	3775	3802	7315	7315					0.010706170035291507
DASLKTYLY	9	Unmodified	_DASLKTYLY_					0	0	0		TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232;ENST00000515518.6_1_5:109760554-109978041:-|nuORF	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.27978515625	2	537.279315	1072.54408	-1.4195	-0.00076268	1.9214	0.0010323	0.50186	0.00026964	537.2803294274802	41.189	0.16869	41.189	41.118	41.287	0					13	9	2	0	0	0	0.30841	1	14538	14538		49.536	3.0793	1	71437			7158	7174	3775	3802	7316	7316					0.010706170035291507
DASPEILAE	9	Unmodified	_DASPEILAE_					0	0	0		tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.73260498046875	2	472.732197	943.449842	-1.4845	-0.00070178	1.8814	0.00088942	0.39691	0.00018763	472.7331617104942	23.058	0.1271	23.058	22.971	23.098	0					7	4	2	0	0	0	0.47038	1	6888	6888		35.618	1.4457	1	83914			7159	22677	3776	3803	7317	7317					-0.024145218186049533
DASPEQPPHP	10	Unmodified	_DASPEQPPHP_					0	0	0			REV__ENST00000468415.6_1_3:58739536-58855213:-|nuORF	REV__ENST00000468415.6_1_3:58739536-58855213:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.74658203125	2	537.74617	1073.47779	-1.434	-0.00077113	2.5569	0.001375	1.1229	0.00060385	537.7474013814344	28.72	0.12207	28.72	28.628	28.75	0					6	3	2	0	0	0	0.32758	1	9569	9569		64.207	4.089	1	70212	+		7160	19441	3777	3804	7318	7318					-0.05601198838508026
DASRPELLY	9	Unmodified	_DASRPELLY_					0	0	0		MGAT1|p.R260H|1|0.15|ENSG00000131446|chr5:180792193-180792193|C/T|missense_variant;ENSG00000131446|ENST00000307826|MGAT1	MGAT1|p.R260H|1|0.15|ENSG00000131446|chr5:180792193-180792193|C/T|missense_variant	MGAT1|p.R260H|1|0.15|ENSG00000131446|chr5:180792193-180792193|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2755737304688	2	532.274564	1062.53457	0.12356	6.5768E-05	4.1035	0.0021842	4.2271	0.00225	532.2775143381158	39.878	0.14931	39.878	39.79	39.939	0					7	5	2	0	0	0	0.39215	1	15187	15187		42.396	1.618	1	98495			7161	3719	3778	3805	7319	7319					0.00580848718004745
DASSGRCTYR	10	Unmodified	_DASSGRCTYR_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.2483520507812	2	558.248554	1114.48256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.229	1	35.229	34.729	35.729	0								0	0	0	0.4044	1	11911	11911		29.17	2.1227	1				7162	8075	3779	3806	7320	7320					-0.07010637967414368
DASVGLWK	8	Unmodified	_DASVGLWK_					0	0	0		nc|ENSG00000134531|P54849-2|EMP1;ENSG00000134531|ENST00000256951|EMP1	nc|ENSG00000134531|P54849-2|EMP1	nc|ENSG00000134531|P54849-2|EMP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.23443603515625	2	438.23471	874.454868	0.25653	0.00011242	-1.1234	-0.00049229	-0.86683	-0.00037987	438.2342125261678	27.097	0.51039	27.097	26.845	27.355	0					16	10	2	0	0	0	0.7126	1	9767	9767		31.955	0	1	182360			7163	3924	3780	3807	7321	7321					0.012618268346614059
DATIVVKSY	9	Unmodified	_DATIVVKSY_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2738037109375	2	498.274032	994.533512	-0.054583	-2.7197E-05	-0.03529	-1.7584E-05	-0.089874	-4.4782E-05	498.27407847215653	32.578	0.096558	32.578	32.55	32.646	0					7	4	2	0	0	0	0.063171	1	10542	10542		90.601	21.814	1	120970			7164	3670	3781	3808	7322	7322					0.036026343490902946
DATIVVKSY	9	Unmodified	_DATIVVKSY_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2735290527344	2	498.274032	994.533512	-1.1077	-0.00055195	0.75231	0.00037486	-0.35542	-0.0001771	498.27442753509985	32.636	0.11719	32.636	32.573	32.69	0					8	5	2	0	0	0	0.11898	1	10895	10895		75.043	25.602	1	109180			7165	3670	3781	3808	7323	7323					0.036026343490902946
DATIVVKSY	9	Unmodified	_DATIVVKSY_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.27435302734375	2	498.274032	994.533512	0.81809	0.00040763	-1.4512	-0.0007231	-0.63311	-0.00031546	498.27339579245194	32.842	0.16759	32.842	32.717	32.885	0					8	4	2	0	0	0	0.015496	1	12526	12526		129.42	55.166	1	580700			7166	3670	3781	3808	7324	7324					0.036026343490902946
DATIVVKSY	9	Unmodified	_DATIVVKSY_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2734375	2	498.274032	994.533512	-2.2319	-0.0011121	1.7832	0.00088852	-0.44867	-0.00022356	498.27507402412954	32.623	0.16623	32.623	32.529	32.695	0					8	5	2	0	0	0	0.037924	1	11358	11358		101.25	40.281	1	84773			7167	3670	3781	3808	7325	7325					0.036026343490902946
DATLSKAAL	9	Unmodified	_DATLSKAAL_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2530822753906	2	445.2531	888.491647	-0.030801	-1.3714E-05	-0.0082498	-3.6732E-06	-0.039051	-1.7388E-05	445.253071652667	22.624	0.30954	22.624	22.446	22.756	0					12	7	2	0	0	0	0.4966	1	7347	7347		32.812	0	1	130350			7168	7584	3782	3809	7326	7326					0.04294078660552714
DATQLGAKN	9	Unmodified	_DATQLGAKN_					0	0	0			REV__nc|ENSG00000173744|P52594-2|AGFG1	REV__nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2376403808594	2	459.237981	916.461409	-0.66343	-0.00030467	0.054849	2.5189E-05	-0.60858	-0.00027948	459.2380286501122	26.039	0.21853	26.039	25.946	26.164	0					12	5	3	0	0	0	0.15163	1	8939	8939		67.494	7.3754	1	611960	+		7169	16530	3783	3810	7327	7327					-0.00016280004626878508
DATYCVASI	9	Carbamidomethyl (C)	_DATYC(Carbamidomethyl (C))VASI_	DATYC(1)VASI		DATYC(61)VASI		0	1	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.22869873046875	2	500.226225	998.437897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.621	1	22.621	22.121	23.121	0								0	0	0	0.14517	1	7683	7683		60.972	8.0352	1		+		7170	13017	3784	3811	7328	7328	508				-0.06138461833461406
DAVAGRIAGQ	10	Unmodified	_DAVAGRIAGQ_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.26141357421875	2	479.259248	956.503943	-0.3144	-0.00015068	3.5006	0.0016777	3.1862	0.001527	479.26109798358215	31.557	0.20224	31.557	31.475	31.677	0					9	5	2	0	0	0	0.43008	1	10873	10873		52.937	3.4007	1	198440	+		7171	16446	3785	3812	7329	7329					0.023951151236246915
DAVGAPWGDV	10	Unmodified	_DAVGAPWGDV_					0	0	0		ENST00000493902.5_1_16:31044585-31047064:+|nuORF	ENST00000493902.5_1_16:31044585-31047064:+|nuORF	ENST00000493902.5_1_16:31044585-31047064:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7324523925781	2	493.732532	985.45051	0.87942	0.0004342	-1.1753	-0.00058027	-0.29586	-0.00014608	493.731962701041	35.971	0.31566	35.971	35.817	36.132	0					9	6	2	0	0	0	0.54197	1	13949	13949		40.778	4.3314	1	217470			7172	10093	3786	3813	7330	7330					-0.042796823789103655
DAVGSRAAGLG	11	Unmodified	_DAVGSRAAGLG_					0	0	0			REV__ENST00000565633.1_1_16:88729767-88737874:+|nuORF	REV__ENST00000565633.1_1_16:88729767-88737874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.25885009765625	2	487.256705	972.498858	2.5533	0.0012441	1.1967	0.00058309	3.7499	0.0018272	487.2572082537624	39.149	0.80159	39.149	38.712	39.513	0					44	17	4	0	0	0	0.53842	1	15419	15419		41.427	2.1738	1	4254500	+		7173	20337	3787	3814	7331	7331					0.011508112610044918
DAVHAILAY	9	Unmodified	_DAVHAILAY_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7616271972656	2	486.761092	971.507631	0.70128	0.00034136	0.20448	9.9533E-05	0.90576	0.00044089	486.7611939177601	46.612	0.18243	46.612	46.56	46.742	0					18	11	2	0	0	0	0.13483	1	17194	17194		71.378	13.567	1	126880			7174	6749	3788	3815	7332	7332					0.02073784897470432
DAVQLFALT	9	Unmodified	_DAVQLFALT_					0	0	0		GNAZ|p.Q205Rfs*29|2|0.37|ENSG00000128266|chr22:23096301-23096301|G/-|frameshift_variant;ENSG00000128266|ENST00000615612|GNAZ	GNAZ|p.Q205Rfs*29|2|0.37|ENSG00000128266|chr22:23096301-23096301|G/-|frameshift_variant	GNAZ|p.Q205Rfs*29|2|0.37|ENSG00000128266|chr22:23096301-23096301|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.266845703125	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.591	1	15.591	15.091	16.091	0								0	0	0	0.088368	1	4059	4059		68.787	10.005	1				7175	3532	3789	3816	7333	7333					0.033746516946507654
DAVRTKMVY	9	Unmodified	_DAVRTKMVY_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.7871704101562	2	541.786784	1081.55902	1.8906	0.0010243	-1.4372	-0.00077868	0.45335	0.00024562	541.7860959213137	26.045	0.42397	26.045	25.916	26.34	0					27	10	4	0	0	0	0.016683	1	8926	8926		127.46	56.166	1	4179900			7176	4861	3790	3817	7334	7334					0.021497855998632076
DAVRTKMVY	9	Unmodified	_DAVRTKMVY_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.5268859863281	3	361.526948	1081.55902	0.48058	0.00017374	-0.93347	-0.00033748	-0.4529	-0.00016373	361.5267068428252	26.039	0.429	26.039	25.818	26.247	0					21	9	4	0	0	0	0.33044	1	8936	8936		82.75	51.116	1	3251100			7177	4861	3790	3817	7335	7335					0.021497855998632076
DAVRTKMVY	9	Unmodified	_DAVRTKMVY_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7871704101562	2	541.786784	1081.55902	1.2757	0.00069114	-0.81445	-0.00044126	0.46121	0.00024988	541.7863962425319	26.04	0.40802	26.04	25.885	26.293	0					23	8	5	0	0	0	0.035062	1	9259	9259		104.06	38.254	1	1714800			7178	4861	3790	3817	7336	7336					0.021497855998632076
DAVRTKMVY	9	Unmodified	_DAVRTKMVY_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.787109375	2	541.786784	1081.55902	0.63677	0.000345	-0.027067	-1.4664E-05	0.60971	0.00033033	541.7870370343114	25.958	0.62003	25.958	25.849	26.469	0					28	12	5	0	0	0	0.016683	1	9120	9120		127.46	61.659	1	3094100			7179	4861	3790	3817	7337	7337					0.021497855998632076
DAVRTKMVY	9	Unmodified	_DAVRTKMVY_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.787353515625	2	541.786784	1081.55902	2.0507	0.0011111	-1.5024	-0.000814	0.5483	0.00029706	541.786044805788	25.992	0.3649	25.992	25.837	26.202	0					19	7	3	0	0	0	0.056004	1	9115	9115		93.143	34.361	1	2324000			7180	4861	3790	3817	7338	7338					0.021497855998632076
DAVVSQVL	8	Unmodified	_DAVVSQVL_					0	0	0		ENSG00000130724|ENST00000312547|CHMP2A	ENSG00000130724|ENST00000312547|CHMP2A	ENSG00000130724|ENST00000312547|CHMP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.7347412109375	2	415.734543	829.454533	0.065604	2.7274E-05	0.97421	0.00040501	1.0398	0.00043229	415.73473992409123	43.533	0.10492	43.533	43.461	43.566	0					8	5	2	0	0	0	0.3049	1	17010	17010		82.241	10.945	1	55287			7181	3663	3791	3818	7339	7339					0.03298407114800739
DAVVSQVL	8	Unmodified	_DAVVSQVL_					0	0	0		ENSG00000130724|ENST00000312547|CHMP2A	ENSG00000130724|ENST00000312547|CHMP2A	ENSG00000130724|ENST00000312547|CHMP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.73541259765625	2	415.734543	829.454533	-0.352	-0.00014634	0.72607	0.00030185	0.37407	0.00015551	415.73491909106764	43.48	0.24854	43.48	43.368	43.617	0					11	8	2	0	0	0	0.39125	1	17383	17383		71.877	10.906	1	57137			7182	3663	3791	3818	7340	7340					0.03298407114800739
DAVYHMVY	8	Unmodified	_DAVYHMVY_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2255554199219	2	499.226028	996.437503	-2.1732	-0.0010849	2.1569	0.0010768	-0.016296	-8.1353E-06	499.226877322592	39.195	0.10248	39.195	39.136	39.239	0					7	5	2	0	0	0	0.68754	1	13992	13992		35.201	8.4046	1	59988			7183	4115	3792	3819	7341	7341					-0.06085836762645158
DAWFYDCY	8	Unmodified	_DAWFYDCY_					0	0	0			REV__nc|ENSG00000007237|O60861-2|GAS7	REV__nc|ENSG00000007237|O60861-2|GAS7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.6981811523438	2	541.699843	1081.38513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.679	1	11.679	11.179	12.179	0								0	0	0	1.7419	1	2264	2264		33.516	8.9964	1		+		7184	12870	3793	3820	7342	7342					-0.15230419896261083
DAWKTQKTL	9	Unmodified	_DAWKTQKTL_					0	0	0		ENST00000489973.6_1_13:111545392-111545482:-|nuORF	ENST00000489973.6_1_13:111545392-111545482:-|nuORF	ENST00000489973.6_1_13:111545392-111545482:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.20135498046875	3	364.201229	1089.58186	-0.10253	-3.7341E-05	0.41238	0.00015019	0.30985	0.00011285	364.201283556518	15.895	0.085072	15.895	15.84	15.925	0					5	3	2	0	0	0	0.45358	1	3659	3659		44.377	11.565	1	50321			7185	10060	3794	3821	7343	7343					0.04065127988997119
DAWLSSYAI	9	Unmodified	_DAWLSSYAI_					0	0	0		CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant	CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant	CASP5|p.K187Rfs*33|1|0.29|ENSG00000137757|chr11:105002185-105002185|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2523803710938	2	513.250557	1024.48656	0.01256	6.4466E-06	1.8629	0.00095613	1.8755	0.00096258	513.2513529033781	37.348	0.6455	37.348	37.059	37.705	0					27	18	2	0	0	0	0.43426	1	14135	14135		38.806	1.647	1	70517			7186	378	3795	3822	7344	7344					-0.024702252020460946
DCADGSDERN	10	Unmodified	_DCADGSDERN_					0	0	0		LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.1975708007812	2	541.196184	1080.37782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.752	1	38.752	38.252	39.252	0								0	0	0	0.4201	1	13850	13850		23.523	1.5628	1				7187	6112	3796	3823	7345	7345					-0.15915804234623465
DCAHAVAGLR	10	Unmodified	_DCAHAVAGLR_					0	0	0			REV__ENST00000489264.2_1_10:75533373-75538679:+|nuORF	REV__ENST00000489264.2_1_10:75533373-75538679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.75347900390625	2	506.753276	1011.492	-0.083437	-4.2282E-05	1.2926	0.00065502	1.2092	0.00061274	506.75377361531395	33.806	0.15602	33.806	33.703	33.859	0					10	6	2	0	0	0	0.65213	1	11013	11013		27.882	14.923	1	106270	+		7188	19698	3797	3824	7346	7346					-0.013288248912203926
DCHSDPLLI	9	Unmodified	_DCHSDPLLI_					0	0	0			REV__NLRP5|p.E577D|1|0.07|ENSG00000171487|chr19:56027964-56027964|G/T|missense_variant	REV__NLRP5|p.E577D|1|0.07|ENSG00000171487|chr19:56027964-56027964|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.748291015625	2	506.742042	1011.46953	-0.36884	-0.00018691	-0.11826	-5.9926E-05	-0.4871	-0.00024684	507.2436495437159	11.981	0.9877	11.981	11.813	12.801	0					66	25	3	0	0	0	0.61124	1	2682	2682		13.775	0	1	4505200	+		7189	21294	3798	3825	7347	7347					-0.035744690794899725
DCIFGKRQS	9	Unmodified	_DCIFGKRQS_					0	0	0		ENSG00000254093|ENST00000314787|PINX1;ENST00000524061.1_1_8:10645233-10677771:-|nuORF	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2608642578125	2	527.260933	1052.50731	0.10385	5.4757E-05	0.16669	8.7889E-05	0.27054	0.00014265	527.2610715554656	12.11	0.21534	12.11	11.999	12.215	0					13	7	2	0	0	0	0.51817	1	2483	2483		30.504	6.3009	1	348930			7190	8006	3799	3826	7348	7348					-0.016839580940086307
DCIIRGDL	8	Unmodified	_DCIIRGDL_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.72857666015625	2	452.731477	903.448402	-1.1956	-0.00054127	-3.9367	-0.0017822	-5.1322	-0.0023235	452.7299075826681	36.605	0.12956	36.605	36.553	36.683	0					9	6	2	0	0	0	0.64144	1	12403	12403		42.396	1.8235	1	31180			7191	5935	3800	3827	7349	7349					-0.007184343883750444
DCLYKQLL	8	Unmodified	_DCLYKQLL_					0	0	0			REV__nc|ENSG00000114867|Q04637-4|EIF4G1;REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__nc|ENSG00000114867|Q04637-4|EIF4G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2655334472656	2	498.265153	994.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.987	1	42.987	42.487	43.487	0								0	0	0	1.7419	1	14115	14115		45.952	7.1458	1		+		7192	14089;19252	3801	3828	7350	7350					0.018275958226013245
DCPAGKVL	8	Carbamidomethyl (C)	_DC(Carbamidomethyl (C))PAGKVL_	DC(1)PAGKVL		DC(71)PAGKVL		0	1	0		ENST00000462787.5_1_3:160117521-160117608:+|nuORF	ENST00000462787.5_1_3:160117521-160117608:+|nuORF	ENST00000462787.5_1_3:160117521-160117608:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2204895019531	2	430.220746	858.426938	-0.54798	-0.00023575	-0.093936	-4.0413E-05	-0.64192	-0.00027617	430.2207557055985	33.617	0.21138	33.617	33.486	33.698	0					14	5	3	0	0	0	0.3961	1	12435	12435		71.296	12.514	1	541350			7193	9749	3802	3829	7351	7351	401				-0.007938194170719726
DCTLHISPL	9	Unmodified	_DCTLHISPL_					0	0	0		ENST00000407595.2_1_2:56602975-56611629:+|nuORF	ENST00000407595.2_1_2:56602975-56611629:+|nuORF	ENST00000407595.2_1_2:56602975-56611629:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7521057128906	2	499.75241	997.490267	0.66695	0.00033331	-0.75582	-0.00037772	-0.088869	-4.4412E-05	499.75198892461987	36.418	0.28874	36.418	36.285	36.573	0					18	8	3	0	0	0	0.26904	1	13712	13712		53.351	7.3792	1	135590			7194	9286	3803	3830	7352	7352					-0.008578786998327814
DCVKTVWL	8	Unmodified	_DCVKTVWL_					0	0	0		ENST00000584842.1_1_17:8141634-8146421:-|nuORF;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENSG00000178971|ENST00000651323|CTC1	ENST00000584842.1_1_17:8141634-8146421:-|nuORF	ENST00000584842.1_1_17:8141634-8146421:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2531433105469	2	482.252046	962.489538	2.3856	0.0011504	-0.24683	-0.00011904	2.1387	0.0010314	482.25193993945663	31.086	0.31236	31.086	30.946	31.258	0					14	6	3	0	0	0	0.28427	1	11580	11580		87.754	87.754	1	736920			7195	6744	3804	3831	7353	7353					0.006793266510953799
DDAAGSRKKKG	11	Unmodified	_DDAAGSRKKKG_					0	0	0		ENSG00000204851|ENST00000599531|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.2072448730469	3	378.207155	1131.59963	0.02503	9.4665E-06	-0.031755	-1.201E-05	-0.0067247	-2.5433E-06	378.2071832666343	14.252	0.086651	14.252	14.224	14.311	0					5	3	2	0	0	0	0.72154	1	2915	2915		28.577	6.6168	1	129410			7196	7727	3805	3832	7354	7354					0.03909843243832256
DDAGLHVSI	9	Unmodified	_DDAGLHVSI_					0	0	0			REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7319641113281	2	463.732532	925.45051	-0.14944	-6.93E-05	-0.96741	-0.00044862	-1.1168	-0.00051792	463.73186258749126	26.63	0.10424	26.63	26.565	26.67	0					4	2	2	0	0	0	0.43426	1	8606	8606		38.806	1.7777	1	45814	+		7197	21563	3806	3833	7355	7355					-0.015196823788983238
DDANLSFTI	9	Unmodified	_DDANLSFTI_					0	0	0			REV__ENSG00000105063|ENST00000412770|PPP6R1	REV__ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2372741699219	2	498.237647	994.460741	-0.72936	-0.0003634	0.18886	9.41E-05	-0.5405	-0.0002693	498.237974434011	43.089	0.23676	43.089	42.994	43.231	0					11	6	3	0	0	0	0.36892	1	17241	17241		44.377	0.26039	1	110780	+		7198	13751	3807	3834	7356	7356					-0.03671119444311444
DDDDDDDDDDY	11	Unmodified	_DDDDDDDDDDY_					0	0	0		ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	666.68359375	2	666.678938	1331.34332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.43	1	35.43	34.93	35.93	0								0	0	0	0.45674	1	11611	11611		6.3127	3.3832	1				7199	8096	3808	3835	7357	7357					-0.3090943842307752
DDDENWGPCNV	11	Unmodified	_DDDENWGPCNV_					0	0	0			REV__SBF2|p.R1075C|1|0.36|ENSG00000133812|chr11:9842658-9842658|G/A|missense_variant	REV__SBF2|p.R1075C|1|0.36|ENSG00000133812|chr11:9842658-9842658|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	632.2335815429688	2	632.232767	1262.45098	1.0178	0.00064347	-0.0061516	-3.8892E-06	1.0116	0.00063958	632.2328084125736	49.378	0.44447	49.378	49.129	49.573	0					38	25	2	0	0	0	0.78498	1	15429	15429		18.262	2.6203	1	79799	+		7200	21489	3809	3836	7358	7358					-0.16974675512005888
DDDYDDPE	8	Unmodified	_DDDYDDPE_					0	0	0		nc|ENSG00000109684|Q7Z7G1-2|CLNK;CLNK|p.N282Ifs*43|1|0.17|ENSG00000109684|chr4:10513525-10513525|T/-|frameshift_variant;nc|ENSG00000109684|Q7Z7G1-3|CLNK;ENSG00000109684|ENST00000226951|CLNK	nc|ENSG00000109684|Q7Z7G1-2|CLNK	nc|ENSG00000109684|Q7Z7G1-2|CLNK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.1592102050781	2	492.159259	982.303965	-0.73698	-0.00036271	-0.65168	-0.00032073	-1.3887	-0.00068344	492.15898371672915	13.817	0.38926	13.817	13.533	13.923	0					17	8	3	0	0	0	0.78999	1	3420	3420		13.775	4.953	1	375140			7201	558	3810	3837	7359	7359					-0.1878944912532461
DDEAEAKFIY	10	Unmodified	_DDEAEAKFIY_					0	0	0			REV__ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	REV__ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.7739868164062	2	600.774593	1199.53463	0.26067	0.00015661	-1.2641	-0.00075946	-1.0035	-0.00060286	600.7738680302127	41.491	0.25076	41.491	41.38	41.631	0					25	10	3	0	0	0	0.55603	1	16299	16299		39.253	8.7492	1	206310	+		7202	15335	3811	3838	7360	7360					-0.05715196072651452
DDEPPKKK	8	Unmodified	_DDEPPKKK_					0	0	0		ENST00000513541.5_1_5:132334277-132335876:-|nuORF;nc|ENSG00000155329|Q8TBK6-2|ZCCHC10;ENSG00000155329|ENST00000509437|ZCCHC10	ENST00000513541.5_1_5:132334277-132335876:-|nuORF	ENST00000513541.5_1_5:132334277-132335876:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7558898925781	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.664	1	14.664	14.164	15.164	0								0	0	0	1.7419	1	3055	3055		26.796	0.10319	1				7203	5122	3812	3839	7361	7361					0.01793177172248761
DDGLHQFL	8	Unmodified	_DDGLHQFL_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.72723388671875	2	472.727249	943.439946	-0.56573	-0.00026744	-0.052401	-2.4771E-05	-0.61814	-0.00029221	472.7273709742263	31.649	0.21676	31.649	31.562	31.779	0					9	5	2	0	0	0	0.70055	1	11572	11572		33.516	1.5607	1	145450			7204	2728	3813	3840	7362	7362					-0.03403665033329162
DDIITNRCF	9	Unmodified	_DDIITNRCF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7608032226562	2	548.758223	1095.50189	3.7998	0.0020852	-0.54423	-0.00029865	3.2556	0.0017865	548.7582415346906	35.808	0.3608	35.808	35.603	35.963	0					12	7	3	0	0	0	0.25716	1	13873	13873		54.776	10.399	1	335240			7205	8001	3814	3841	7363	7363					-0.0420368167651759
DDKPTLYPL	9	Unmodified	_DDKPTLYPL_					0	0	0			REV__FTO|p.E37A|1|0.35|ENSG00000140718|chr16:53810204-53810204|A/C|missense_variant	REV__FTO|p.E37A|1|0.35|ENSG00000140718|chr16:53810204-53810204|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.277099609375	2	531.279315	1060.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.875	1	36.875	36.375	37.375	0								0	0	0	0.28666	1	12080	12080		37.812	4.2959	1		+		7206	15091	3815	3842	7364	7364					0.016226170034997267
DDKSKLVV	8	Unmodified	_DDKSKLVV_					0	0	0			REV__ENSG00000163931|ENST00000462138|TKT	REV__ENSG00000163931|ENST00000462138|TKT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.260986328125	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.522	1	17.522	17.022	18.022	0								0	0	0	1.7419	1	4406	4406		38.806	1.647	1		+		7207	15936	3816	3843	7365	7365					0.052143651776077604
DDLGAAHL	8	Unmodified	_DDLGAAHL_					0	0	0		ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENST00000519583.5_1_5:178044267-178044471:-|nuORF	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.20111083984375	2	406.200867	810.387182	-0.12057	-4.8975E-05	-0.15773	-6.407E-05	-0.2783	-0.00011305	406.2007612514308	22.221	0.33902	22.221	21.979	22.318	0					20	10	2	0	0	0	0.66238	1	6203	6203		39.021	1.993	1	183140			7208	10307	3817	3844	7366	7366					-0.025596230961355104
DDLGLAALR	9	Unmodified	_DDLGLAALR_					0	0	0			REV__ENSG00000176624|ENST00000406189|MEX3C	REV__ENSG00000176624|ENST00000406189|MEX3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2641906738281	2	472.263999	942.513445	-0.54691	-0.00025829	0.66593	0.00031449	0.11902	5.6207E-05	472.2642846609393	42.557	0.15814	42.557	42.488	42.646	0					16	9	2	0	0	0	0.2873	1	14860	14860		51.335	3.3759	1	69702	+		7209	16664	3818	3845	7367	7367					0.03988883409124355
DDLMQKVLQG	10	Unmodified	_DDLMQKVLQG_					0	0	0			REV__ENSG00000126088|ENST00000246337|UROD	REV__ENSG00000126088|ENST00000246337|UROD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.7958374023438	2	573.794806	1145.57506	0.60935	0.00034964	0.0036561	2.0979E-06	0.61301	0.00035174	573.7952962676826	34.259	0.16192	34.259	34.198	34.36	0					7	5	2	0	0	0	0.65213	1	12116	12116		27.882	0.83493	1	62917	+		7210	14456	3819	3846	7368	7368					0.008094470461173842
DDLTISKGL	9	Unmodified	_DDLTISKGL_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2632751464844	2	481.263665	960.512776	2.3481	0.00113	-1.5862	-0.00076338	0.76185	0.00036665	481.2617646387086	41.731	0.22885	41.731	41.546	41.775	0					9	6	2	0	0	0	0.40353	1	16618	16618		41.427	6.2259	1	87124	+		7211	13889	3820	3847	7369	7369					0.030940439694290944
DDNDNHPM	8	Unmodified	_DDNDNHPM_					0	0	0		PCDHB1|p.R559H|1|0.27|ENSG00000171815|chr5:141053146-141053146|G/A|missense_variant	PCDHB1|p.R559H|1|0.27|ENSG00000171815|chr5:141053146-141053146|G/A|missense_variant	PCDHB1|p.R559H|1|0.27|ENSG00000171815|chr5:141053146-141053146|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.17205810546875	2	479.171981	956.329409	-0.46325	-0.00022197	1.539	0.00073743	1.0757	0.00051545	479.17260184645096	49.674	0.6087	49.674	49.354	49.963	0					35	22	2	0	0	0	0.78999	1	18624	18624		13.775	0.81615	1	82849			7212	11904	3821	3848	7370	7370					-0.15050253083870757
DDNEGVCDLFD	11	Unmodified	_DDNEGVCDLFD_					0	0	0		nc|ENSG00000133740|Q15329-3|E2F5;nc|ENSG00000133740|Q15329-2|E2F5;ENSG00000133740|ENST00000416274|E2F5	nc|ENSG00000133740|Q15329-3|E2F5	nc|ENSG00000133740|Q15329-3|E2F5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	621.2366333007812	2	621.234975	1240.4554	0.68779	0.00042728	0.52575	0.00032661	1.2135	0.00075389	621.2361277090602	15.27	0.11714	15.27	15.194	15.312	0					10	3	4	0	0	0	0.82749	1	3436	3436		9.1829	1.9896	1	495100			7213	3869	3822	3849	7371	7371					-0.1552121108911706
DDNKVLTL	8	Unmodified	_DDNKVLTL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.D2341Tfs*111|1|0.32|ENSG00000187775|chr17:78486305-78486305|G/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant;DNAH9|p.P2650Hfs*2|2|0.29|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;nc|ENSG00000183914|Q9P225-2|DNAH2	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.25006103515625	2	459.250557	916.486562	0.80443	0.00036944	-1.8393	-0.00084471	-1.0349	-0.00047527	459.24989157171984	31.579	0.62129	31.579	31.211	31.833	0					27	15	3	0	0	0	0.48092	1	11502	11502		62.107	3.3255	1	763800			7214	814;812;997;815	3823	3850	7372	7372					0.024977747979505693
DDPAYDMEEE	10	Unmodified	_DDPAYDMEEE_					0	0	0			REV__nc|ENSG00000006712|Q8N7H5-3|PAF1	REV__nc|ENSG00000006712|Q8N7H5-3|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.2158813476562	2	607.213708	1212.41286	1.7002	0.0010324	1.316	0.00079906	3.0162	0.0018315	607.215186695088	49.858	0.31643	49.858	49.758	50.074	0					21	13	2	0	0	0	0.73274	1	19735	19735		16.473	2.336	1	65143	+		7215	12860	3824	3851	7373	7373					-0.18484606217316468
DDPDVERLSI	10	Unmodified	_DDPDVERLSI_					0	0	0			REV__MAGEC1|p.G962D|1|0.15|ENSG00000155495|chrX:141908289-141908289|G/A|missense_variant	REV__MAGEC1|p.G962D|1|0.15|ENSG00000155495|chrX:141908289-141908289|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7889404296875	2	579.785492	1157.55643	3.2513	0.0018851	4.4611	0.0025865	7.7124	0.0044715	579.7868436953521	41.459	0.3038	41.459	41.214	41.518	0					11	7	2	0	0	0	0.19191	1	16490	16490		80.455	18.347	1	139590	+		7216	15597	3825	3852	7374	7374					-0.016043913240764596
DDPGSNKPL	9	Unmodified	_DDPGSNKPL_					0	0	0		nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827;ZNF827|p.S121R|1|0.4|ENSG00000151612|chr4:145902896-145902896|G/T|missense_variant	nc|ENSG00000151612|Q17R98-2|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7304382324219	2	471.729989	941.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.858	1	33.858	33.358	34.358	0								0	0	0	0.25587	1	11390	11390		42.864	0.38981	1				7217	4975	3826	3853	7375	7375					-0.027639862415185235
DDPLSAVDAH	10	Unmodified	_DDPLSAVDAH_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2;ABCC12|p.L626M|1|0.33|ENSG00000140798|chr16:48115528-48115528|G/T|missense_variant;ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000140798|Q96J65-2|ABCC12;ABCC12|p.M936Yfs*84|1|0.32|ENSG00000140798|chr16:48104236-48104237|-/A|frameshift_variant;ABCC12|p.R1075Cfs*54|1|0.38|ENSG00000140798|chr16:48091182-48091183|-/CA|frameshift_variant;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000023839|ENST00000647814|ABCC2;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000140798|Q96J65-2|ABCC12;ENSG00000121270|ENST00000356608|ABCC11	nc|ENSG00000103222|P33527-6|ABCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2383422851562	2	520.238178	1038.4618	0.25157	0.00013088	0.40618	0.00021131	0.65775	0.00034219	520.2385016908265	24.251	0.3884	24.251	24.053	24.442	0					28	12	3	0	0	0	0.73274	1	7373	7373		16.473	0.83134	1	345880			7218	2222;15;3217;1123	3827	3854	7376	7376					-0.05588905075433104
DDRTLIIL	8	Unmodified	_DDRTLIIL_					0	0	0			REV__nc|ENSG00000184029|P56555|DSCR4	REV__nc|ENSG00000184029|P56555|DSCR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.78155517578125	2	479.782025	957.549496	-1.4011	-0.00067221	0.54928	0.00026353	-0.8518	-0.00040868	479.7824244444666	35.641	0.59577	35.641	35.435	36.031	0					72	29	5	0	0	0	0.48092	1	12007	12007		62.107	9.1707	1	1287900	+		7219	21156	3828	3855	7377	7377					0.06902340586009359
DDSAFKKI	8	Unmodified	_DDSAFKKI_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.24493408203125	2	462.245275	922.475997	-0.13161	-6.0835E-05	-0.35727	-0.00016515	-0.48887	-0.00022598	462.2450707017888	32.201	0.29531	32.201	32.048	32.343	0					14	8	2	0	0	0	0.41701	1	11146	11146		68.787	12.066	1	175130			7220	6393	3829	3856	7378	7378					0.011657921435357821
DDSLGQSFY	9	Unmodified	_DDSLGQSFY_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.219970703125	2	516.219454	1030.42436	0.18666	9.6355E-05	2.6474	0.0013667	2.8341	0.001463	516.2212213666897	35.886	1.0105	35.886	35.586	36.596	0					35	20	4	0	0	0	0.16002	1	13907	13907		66.429	0.6261	1	424440			7221	4547	3830	3857	7379	7379					-0.08963996341026359
DDTADLFPEES	11	Unmodified	_DDTADLFPEES_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	619.7542724609375	2	619.756598	1237.49864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.363	1	25.363	24.863	25.863	0								0	0	0	0.45674	1	7881	7881		14.865	2.0532	1				7222	1796	3831	3858	7380	7380					-0.11060698040205352
DDTEDTVVS	9	Unmodified	_DDTEDTVVS_					0	0	0		nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	nc|ENSG00000188739|P42696-2|RBM34	nc|ENSG00000188739|P42696-2|RBM34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.706787109375	2	490.706377	979.3982	-0.052769	-2.5894E-05	1.9574	0.0009605	1.9046	0.0009346	490.7071022713534	18.999	0.10095	18.999	18.93	19.031	0					6	3	2	0	0	0	0.43426	1	4837	4837		38.806	4.6336	1	88516			7223	7270	3832	3859	7381	7381					-0.09232310303173108
DDTSKKIE	8	Unmodified	_DDTSKKIE_					0	0	0			REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.23724365234375	2	468.237647	934.460741	-0.70736	-0.00033121	-0.20412	-9.5576E-05	-0.91147	-0.00042679	468.23756973339874	18.89	0.13781	18.89	18.803	18.941	0					5	3	2	0	0	0	0.5535	1	5032	5032		54.776	1.8396	1	140840	+		7224	14925	3833	3860	7382	7382					-0.009111194443221393
DDVESFVSRLQ	11	Unmodified	_DDVESFVSRLQ_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;EPS8L1|p.D510Efs*3|1|0.38|ENSG00000131037|chr19:55086071-55086072|AC/-|frameshift_variant;ENST00000592284.5_1_19:55593146-55593922:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	647.8173828125	2	647.817324	1293.62009	0.34906	0.00022613	-0.055338	-3.5849E-05	0.29372	0.00019028	647.8172064665256	23.912	0.18782	23.912	23.819	24.006	0					11	4	3	0	0	0	0.3224	1	7994	7994		60.118	9.327	1	708260			7225	3692;11522	3834	3861	7383	7383					-0.014970308869806104
DDVFVFNVQ	9	Unmodified	_DDVFVFNVQ_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;CELSR1|p.T1849Rfs*8|2|0.25|ENSG00000075275|chr22:46397831-46397831|C/-|frameshift_variant;CELSR1|p.R2275Qfs*18|1|0.18|ENSG00000075275|chr22:46384603-46384604|-/G|frameshift_variant;CELSR1|p.I2650Sfs*5|1|0.42|ENSG00000075275|chr22:46369187-46369187|T/-|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.5104064941406	3	361.509952	1081.50803	0.73182	0.00026456	-0.35211	-0.00012729	0.37971	0.00013727	361.51012140566553	18.928	0.08061	18.928	18.896	18.977	0					6	2	3	0	0	0	0.41354	1	5636	5636		31.53	0	1	242160			7226	467	3835	3862	7384	7384					-0.02946840173331111
DDVSKQAQL	9	Unmodified	_DDVSKQAQL_					0	0	0			REV__ENSG00000133019|ENST00000676153|CHRM3	REV__ENSG00000133019|ENST00000676153|CHRM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.25616455078125	2	502.256371	1002.49819	-0.043856	-2.2027E-05	0.99374	0.00049911	0.94988	0.00047709	502.25724743615115	26.684	0.13794	26.684	26.612	26.75	0					6	4	2	0	0	0	0.35021	1	8146	8146		45.972	3.5761	1	35893	+		7227	14689	3836	3863	7385	7385					-0.0029602817870681974
DDVTFGVLKR	10	Unmodified	_DDVTFGVLKR_					0	0	0		sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1;sp|F5HE12|UL35_HCMVMTegumentproteinUL35OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL35PE=3SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.3175048828125	2	575.316763	1148.61897	0.6011	0.00034582	0.29798	0.00017144	0.89909	0.00051726	575.3173085847168	33.296	0.14301	33.296	33.218	33.361	0					6	4	2	0	0	0	0.62235	1	11683	11683		31.53	3.6476	1	75402			7228	22446	3837	3864	7386	7386					0.050607995347718315
DDVTVITNL	9	Unmodified	_DDVTVITNL_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2611389160156	2	495.261122	988.507691	-0.040229	-1.9924E-05	-0.4597	-0.00022767	-0.49993	-0.0002476	495.26082710431734	31.53	0.34237	31.53	31.438	31.78	0					15	7	3	0	0	0	0.54267	1	11889	11889		27.882	0	1	1525700			7229	11570	3838	3865	7387	7387					0.012977401068042127
DDYVGTFLEG	10	Unmodified	_DDYVGTFLEG_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2486572265625	2	558.248212	1114.48187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.025	1	44.025	43.525	44.525	0								0	0	0	0.37816	1	17643	17643		37.159	10.466	1				7230	3781	3839	3866	7388	7388					-0.07079154135453791
DEALLVTDSE	10	Unmodified	_DEALLVTDSE_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2608642578125	2	546.258776	1090.503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.542	1	41.542	41.042	42.042	0								0	0	0	0.39665	1	14632	14632		31.53	2.3803	1		+		7231	13291	3840	3867	7389	7389					-0.038631888266309033
DECALRTHT	9	Unmodified	_DECALRTHT_					0	0	0		nc|ENSG00000165973|Q92832-2|NELL1;ENSG00000165973|ENST00000357134|NELL1	nc|ENSG00000165973|Q92832-2|NELL1	nc|ENSG00000165973|Q92832-2|NELL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2404174804688	2	523.240198	1044.46584	0.76877	0.00040225	-0.62373	-0.00032636	0.14504	7.5889E-05	523.2398213254863	11.636	0.10519	11.636	11.588	11.693	0					12	4	4	0	0	0	0.5879	1	2177	2177		23.042	0	1	977940			7232	5849	3841	3868	7390	7390					-0.0546113885336581
DEDARTAMA	9	Unmodified	_DEDARTAMA_					0	0	0			REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.21014404296875	2	490.211106	978.407659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.227	1	45.227	44.727	45.727	0								0	0	0	0.36266	1	16858	16858		21.96	1.9631	1		+		7233	13162	3842	3869	7391	7391					-0.08240820498633639
DEDDDEEEQEE	11	Unmodified	_DEDDDEEEQEE_					0	0	0			REV__nc|ENSG00000145041|Q9Y4B6-3|DCAF1	REV__nc|ENSG00000145041|Q9Y4B6-3|DCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	691.2244262695312	2	691.223513	1380.43247	-1.7546	-0.0012128	3.7347	0.0025815	1.9801	0.0013687	691.2259028995495	49.763	0.35947	49.763	49.509	49.869	0					21	14	2	0	0	0	0.79554	1	17970	17970		16.007	3.1951	1	63472	+		7234	15256	3843	3870	7392	7392					-0.24252603463537525
DEDGKKFKI	9	Unmodified	_DEDGKKFKI_					0	0	0		ENST00000587681.5_1_19:10229095-10230535:-|nuORF;ENST00000589009.5_1_19:10227257-10229639:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000587681.5_1_19:10229095-10230535:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2904052734375	2	540.290214	1078.56587	0.27105	0.00014644	-0.41154	-0.00022235	-0.14049	-7.5905E-05	540.2900340621476	41.187	0.21862	41.187	41.091	41.309	0					19	10	3	0	0	0	0.28897	1	15663	15663		51.193	9.7661	1	119950			7235	10912;3675	3844	3871	7393	7393					0.029734217520854145
DEDKIMKM	8	Unmodified	_DEDKIMKM_					0	0	0			REV__ZNF366|p.F198Ifs*43|1|0.37|ENSG00000178175|chr5:72460905-72460906|-/T|frameshift_variant	REV__ZNF366|p.F198Ifs*43|1|0.37|ENSG00000178175|chr5:72460905-72460906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.23834228515625	2	505.238278	1008.462	1.0542	0.00053261	-0.47797	-0.00024149	0.57621	0.00029113	505.2379869105134	14.44	0.19117	14.44	14.317	14.508	0					7	4	2	0	0	0	0.59773	1	3747	3747		49.442	1.7842	1	246940	+		7236	16724	3845	3872	7394	7394					-0.04188944671409445
DEDVLDRHQ	9	Unmodified	_DEDVLDRHQ_					0	0	0			REV__USP53|p.R476Q|1|0.3|ENSG00000145390|chr4:119269829-119269829|G/A|missense_variant	REV__USP53|p.R476Q|1|0.3|ENSG00000145390|chr4:119269829-119269829|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.7606811523438	2	563.759809	1125.50507	0.89266	0.00050325	0.78015	0.00043982	1.6728	0.00094306	563.7602092397188	15.912	0.16219	15.912	15.84	16.002	0					9	6	2	0	0	0	0.60749	1	3657	3657		20.947	1.587	1	169210	+		7237	22269	3846	3873	7395	7395					-0.05266715298148483
DEEKKAEVK	9	Unmodified	_DEEKKAEVK_					0	0	0			REV__NEFH|p.A897D|1|0.4|ENSG00000100285|chr22:29490330-29490330|C/A|missense_variant	REV__NEFH|p.A897D|1|0.4|ENSG00000100285|chr22:29490330-29490330|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.28466796875	2	538.285128	1074.5557	1.3691	0.00073697	-2.6399	-0.001421	-1.2708	-0.00068407	538.2839079891984	33.071	0.27193	33.071	32.974	33.246	0					10	6	3	0	0	0	0.1424	1	12617	12617		69.628	0.8408	1	139490	+		7238	21281	3847	3874	7396	7396					0.021408140268476927
DEEVLADQY	9	Unmodified	_DEEVLADQY_					0	0	0			REV__nc|ENSG00000162105|Q9UPX8-4|SHANK2	REV__nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2388916015625	2	541.237844	1080.46113	2.0115	0.0010887	-0.024339	-1.3173E-05	1.9872	0.0010755	541.2378316289136	21.567	0.76283	21.567	21.458	22.22	0					40	15	5	0	0	0	0.18605	1	7181	7181		63.306	9.9548	1	5732500	+		7239	15802	3848	3875	7397	7397					-0.07587744515149097
DEEVLADQY	9	Unmodified	_DEEVLADQY_					0	0	0			REV__nc|ENSG00000162105|Q9UPX8-4|SHANK2	REV__nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.23876953125	2	541.237844	1080.46113	2.0661	0.0011183	-0.33575	-0.00018172	1.7304	0.00093655	541.2376438330963	21.628	0.91601	21.628	21.471	22.387	0					34	18	4	0	0	0	0.18605	1	7056	7056		63.306	63.306	1	5764600	+		7240	15802	3848	3875	7398	7398					-0.07587744515149097
DEFGHTSQL	9	Unmodified	_DEFGHTSQL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2327880859375	2	517.232896	1032.45124	0.044166	2.2844E-05	0.14298	7.3953E-05	0.18714	9.6797E-05	517.2330066751261	31.727	0.25913	31.727	31.601	31.86	0					11	6	3	0	0	0	0.15163	1	11573	11573		67.494	21.521	1	194510			7241	2131	3849	3876	7399	7399					-0.06368887729854578
DEFRILPF	8	Unmodified	_DEFRILPF_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7781982421875	2	518.776742	1035.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.96	1	39.96	39.46	40.46	0								0	0	0	1.7419	1	15831	15831		35.201	0.04869	1		+		7242	13022	3850	3877	7400	7400					0.022583579315551106
DEGNITKRK	9	Unmodified	_DEGNITKRK_					0	0	0			REV__ENSG00000120837|ENST00000240055|NFYB	REV__ENSG00000120837|ENST00000240055|NFYB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.79443359375	2	530.790912	1059.56727	3.4316	0.0018214	2.1523	0.0011424	5.5839	0.0029639	530.7919287211336	38.195	0.20146	38.195	38.099	38.3	0					6	4	2	0	0	0	0.21419	1	15008	15008		59.931	10.395	1	325960	+		7243	14299	3851	3878	7401	7401					0.03987055840843823
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7321472167969	2	463.732532	925.45051	-0.44213	-0.00020503	-0.20255	-9.393E-05	-0.64468	-0.00029896	463.73227780033403	33.334	0.13417	33.334	33.243	33.377	0					7	5	2	0	0	0	0.39215	1	10823	10823		42.396	5.3677	1	104190			7244	3901	3852	3879	7402	7402					-0.015196823788869551
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7322692871094	2	463.732532	925.45051	-0.72605	-0.00033669	0.26329	0.00012209	-0.46277	-0.0002146	463.7326857255811	33.397	0.15379	33.397	33.313	33.466	0					12	6	2	0	0	0	0.39215	1	11194	11194		42.396	0	1	120280			7245	3901	3852	3879	7403	7403					-0.015196823788869551
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7322692871094	2	463.732532	925.45051	0.69897	0.00032414	-1.0769	-0.00049937	-0.37788	-0.00017523	463.73199181684174	33.567	0.21107	33.567	33.479	33.69	0					12	5	3	0	0	0	0.24095	1	12868	12868		56.721	12.604	1	632130			7246	3901	3852	3879	7404	7404					-0.015196823788869551
DEHAVRFQ	8	Unmodified	_DEHAVRFQ_					0	0	0			REV__ENST00000450133.5_1_7:32956958-32982633:-|nuORF	REV__ENST00000450133.5_1_7:32956958-32982633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2438049316406	2	501.243598	1000.47264	-0.96468	-0.00048354	0.19088	9.5678E-05	-0.7738	-0.00038786	501.24416336313453	32.96	0.99109	32.96	32.794	33.785	0					132	39	6	0	0	0	0.64096	1	11296	11296		42.474	1.6963	1	29372000	+		7247	15995	3853	3880	7405	7405					-0.027574579104680197
DEIIAGDE	8	Unmodified	_DEIIAGDE_					0	0	0			REV__tr|U7SJ39|U7SJ39_FUSNUAcyl-[acyl-carrier-protein]--UDP-N-acetylglucosamineO-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxAPE=3SV=1	REV__tr|U7SJ39|U7SJ39_FUSNUAcyl-[acyl-carrier-protein]--UDP-N-acetylglucosamineO-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.1980285644531	2	431.195448	860.376342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.801	1	39.801	39.301	40.301	0								0	0	0	1.7419	1	15756	15756		60.294	3.5729	1		+		7248	21725	3854	3881	7406	7406					-0.05943070261082539
DEIIKKLAE	9	Unmodified	_DEIIKKLAE_					0	0	0			REV__ENST00000455793.1_1_X:61999306-61999546:+|nuORF	REV__ENST00000455793.1_1_X:61999306-61999546:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8098754882812	2	529.808239	1057.60193	2.337	0.0012381	-0.3918	-0.00020758	1.9452	0.0010306	529.8082555740981	44.142	0.12468	44.142	44.04	44.165	0					12	7	3	0	0	0	0.43488	1	16575	16575		39.253	0	1	94600	+		7249	14973	3855	3882	7407	7407					0.0754287892893899
DEISVRGNK	9	Unmodified	_DEISVRGNK_					0	0	0			REV__tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	REV__tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.27197265625	2	509.269813	1016.52507	3.0089	0.0015324	1.2174	0.00062	4.2264	0.0021524	509.2704927970637	39.325	0.32895	39.325	39.23	39.559	0					17	7	3	0	0	0	0.19605	1	15541	15541		62.107	3.8775	1	871000	+		7250	21912	3856	3883	7408	7408					0.01747080432483017
DEKDFSIDF	9	Unmodified	_DEKDFSIDF_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.2503051757812	2	558.248212	1114.48187	1.1177	0.00062393	0.8402	0.00046904	1.9579	0.001093	558.2485726282807	33.455	1.1133	33.455	33.218	34.331	0					92	32	5	0	0	0	0.51817	1	12032	12032		30.504	7.4612	1	3326400	+		7251	14214	3857	3884	7409	7409					-0.07079154135476529
DEKKAGPL	8	Unmodified	_DEKKAGPL_					0	0	0		ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.24005126953125	2	429.239993	856.465432	0.81771	0.00035099	0.27901	0.00011976	1.0967	0.00047076	429.2403036961511	20.347	0.25193	20.347	20.241	20.493	0					12	5	3	0	0	0	0.6282	1	6312	6312		44.531	2.0566	1	466820			7252	2623	3858	3885	7410	7410					0.03145809489092244
DEKKTLNTL	9	Unmodified	_DEKKTLNTL_					0	0	0		ENSG00000151746|ENST00000652176|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;nc|ENSG00000151746|Q96G01-4|BICD1	ENSG00000151746|ENST00000652176|BICD1	ENSG00000151746|ENST00000652176|BICD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2964477539062	2	531.295496	1060.57644	3.4229	0.0018186	-2.083	-0.0011067	1.3399	0.0007119	531.2942717294627	20.99	0.41455	20.99	20.759	21.174	0					17	8	4	0	0	0	0.032181	1	6764	6764		90.601	0	1	797130			7253	4984	3859	3886	7411	7411					0.0485740440653899
DEKLIKSVI	9	Unmodified	_DEKLIKSVI_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8182373046875	2	522.818607	1043.62266	0.792	0.00041407	-0.89125	-0.00046596	-0.099247	-5.1888E-05	522.8179865028699	28.85	0.16364	28.85	28.814	28.978	0					9	5	2	0	0	0	0.24334	1	9052	9052		40.778	0	1	66969			7254	877	3860	3887	7412	7412					0.10259469308630287
DEKRINGI	8	Unmodified	_DEKRINGI_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7611389160156	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.802	1	27.802	27.302	28.302	0								0	0	0	1.7419	1	9993	9993		55.504	7.8469	1				7255	11499	3861	3888	7413	7413					0.03467999266388233
DEKTQAQGAME	11	Oxidation (M)	_DEKTQAQGAM(Oxidation (M))E_		DEKTQAQGAM(1)E		DEKTQAQGAM(46)E	0	0	1			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.2646484375	2	612.264067	1222.51358	-0.82085	-0.00050258	1.7104	0.0010472	0.88951	0.00054462	612.2649324597174	35.342	0.23755	35.342	35.257	35.495	0					10	6	2	0	0	0	0.46959	1	13255	13255		46.457	7.2039	1	155460	+		7256	16441	3862	3889	7414	7414		627			-0.08877529443839194
DEKYSVSNI	9	Unmodified	_DEKYSVSNI_					0	0	0		ANKRD36|p.D595Y|1|0.27|ENSG00000135976|chr2:97181739-97181739|G/T|missense_variant	ANKRD36|p.D595Y|1|0.27|ENSG00000135976|chr2:97181739-97181739|G/T|missense_variant	ANKRD36|p.D595Y|1|0.27|ENSG00000135976|chr2:97181739-97181739|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7564086914062	2	527.756204	1053.49785	0.6763	0.00035692	-0.14963	-7.8968E-05	0.52667	0.00027795	527.7559991974447	38.095	0.19782	38.095	37.988	38.186	0					10	4	3	0	0	0	0.13726	1	14938	14938		70.816	3.8543	1	194990			7257	159	3863	3890	7415	7415					-0.026754478985594687
DELHFLLSH	9	Unmodified	_DELHFLLSH_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.8573303222656	3	370.857463	1109.55056	-2.096	-0.00077731	2.2187	0.00082283	0.12273	4.5516E-05	370.85816490174335	23.632	0.17104	23.632	23.542	23.713	0					9	4	3	0	0	0	0.4966	1	7253	7253		32.812	0	1	131120			7258	11773	3864	3891	7416	7416					0.00016554954913772235
DELPKWERKSS	11	Unmodified	_DELPKWERKSS_					0	0	0			REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	688.3551025390625	2	687.854241	1373.69393	-1.5931	-0.0010958	-0.46342	-0.00031877	-2.0566	-0.0014146	687.8538678394331	48.948	0.32852	48.948	48.827	49.156	0					49	20	3	0	0	0	0.7887	1	17714	17714		17.468	1.4612	1	451850	+		7259	13171	3865	3892	7417	7417					0.022029372753195275
DELSLPEGP	9	Unmodified	_DELSLPEGP_					0	0	0		nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;ENST00000587391.5_1_19:36592854-36593151:+|nuORF	nc|ENSG00000075702|O43379|WDR62	nc|ENSG00000075702|O43379|WDR62	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.732421875	2	478.732197	955.449842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.189	1	45.189	44.689	45.689	0								0	0	0	0.32356	1	18102	18102		30.504	0	1				7260	1546	3866	3893	7418	7418					-0.029665218185982667
DENPYHKKY	9	Unmodified	_DENPYHKKY_					0	0	0			REV__PHTF2|p.A375T|1|0.15|ENSG00000006576|chr7:77929112-77929112|G/A|missense_variant	REV__PHTF2|p.A375T|1|0.15|ENSG00000006576|chr7:77929112-77929112|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.2821655273438	2	597.28292	1192.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.372	1	29.372	28.872	29.872	0								0	0	0	0.30504	1	9555	9555		34.173	5.0025	1		+		7261	12856	3867	3894	7419	7419					-0.03728650396055855
DEQFAFKQ	8	Unmodified	_DEQFAFKQ_					0	0	0			REV__ENSG00000146410|ENST00000420702|MTFR2	REV__ENSG00000146410|ENST00000420702|MTFR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.74114990234375	2	506.740357	1011.46616	-0.36885	-0.00018691	3.2077	0.0016255	2.8389	0.0014386	507.2436495437159	11.981	0.9877	11.981	11.813	12.801	0					66	25	3	0	0	0	0.3961	1	2550	2550		71.296	2.5089	1	4505200	+		7262	15311	3868	3895	7420	7420					-0.03911395861860001
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7700805664062	2	528.769645	1055.52474	0.10998	5.8157E-05	0.73416	0.0003882	0.84415	0.00044636	528.7699864312976	28.766	0.25878	28.766	28.671	28.929	0					18	6	3	0	0	0	0.025517	1	10188	10188		113.41	20.268	1	2133200			7263	10918	3869	3896	7421	7421					-0.0008033928741042473
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.769775390625	2	528.769645	1055.52474	1.7436	0.00092195	-0.38267	-0.00020234	1.3609	0.00071961	528.7693212877608	28.769	0.36043	28.769	28.661	29.022	0					17	7	3	0	0	0	0.047412	1	10591	10591		96.19	2.184	1	1677300			7264	10918	3869	3896	7422	7422					-0.0008033928741042473
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7702026367188	2	528.769645	1055.52474	3.4598	0.0018294	-2.2296	-0.0011789	1.2302	0.00065048	528.7684290685718	28.733	0.31698	28.733	28.624	28.941	0					17	6	4	0	0	0	0.01768	1	10432	10432		125.81	21.067	1	2851500			7265	10918	3869	3896	7423	7423					-0.0008033928741042473
DERLIYKP	8	Unmodified	_DERLIYKP_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENST00000431957.1_1_7:126935711-126936140:+|nuORF	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.1940002441406	3	345.194075	1032.5604	0.51953	0.00017934	-0.65974	-0.00022774	-0.1402	-4.8398E-05	345.1938631157435	17.299	0.20568	17.299	17.183	17.388	0					14	4	4	0	0	0	0.66372	1	5101	5101		32.812	0.061884	1	527630			7266	2096	3870	3897	7424	7424					0.04541742960282136
DERLRFKGP	9	Unmodified	_DERLRFKGP_					0	0	0		GABRA5|p.A356Pfs*15|1|0.24|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant;ENSG00000186297|ENST00000335625|GABRA5	GABRA5|p.A356Pfs*15|1|0.24|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant	GABRA5|p.A356Pfs*15|1|0.24|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.2098083496094	3	373.208607	1116.60399	-2.1084	-0.00078687	3.6196	0.0013509	1.5112	0.000564	373.210083521174	23.71	1.0441	23.71	23.462	24.506	0					37	25	3	0	0	0	0.41354	1	7605	7605		56.721	30.028	1	418580			7267	7130	3871	3898	7425	7425					0.050353524574120456
DERVKGAHLK	10	Unmodified	_DERVKGAHLK_					0	0	0			REV__ENSG00000163083|ENST00000295228|INHBB	REV__ENSG00000163083|ENST00000295228|INHBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.8877258300781	3	384.887645	1151.64111	-0.59694	-0.00022975	0.67457	0.00025963	0.077632	2.988E-05	384.88799470720954	18.629	0.16357	18.629	18.522	18.685	0					5	3	2	0	0	0	0.45669	1	5624	5624		50.034	7.1692	1	471080	+		7268	15858	3872	3899	7426	7426					0.07135024003173385
DESPSRDGER	10	Unmodified	_DESPSRDGER_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.2510986328125	2	574.252348	1146.49014	-0.11359	-6.5229E-05	-2.0914	-0.001201	-2.205	-0.0012662	574.2512429956851	15.11	0.1903	15.11	15.01	15.201	0					5	4	2	0	0	0	0.65051	1	3844	3844		28.081	0	1	467100	+		7269	14885	3873	3900	7427	7427					-0.07724207166120323
DEVICAVNLK	10	Unmodified	_DEVICAVNLK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2921752929688	2	552.291899	1102.56925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.39	1	42.39	41.89	42.89	0								0	0	0	0.28704	1	16915	16915		52.937	1.744	1				7270	2740	3874	3901	7428	7428					0.022063485344233413
DEVIPDQL	8	Unmodified	_DEVIPDQL_					0	0	0			REV__ENST00000476321.5_1_1:110279982-110280760:-|nuORF	REV__ENST00000476321.5_1_1:110279982-110280760:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.73406982421875	2	464.73474	927.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.586	1	41.586	41.086	42.086	0								0	0	0	1.7419	1	13802	13802		24.203	1.1603	1		+		7271	19539	3875	3902	7429	7429					-0.011702179559961223
DEVSRLTVI	9	Unmodified	_DEVSRLTVI_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2906494140625	2	516.290214	1030.56587	1.4651	0.00075644	-1.6255	-0.00083921	-0.16031	-8.2764E-05	516.2896722603864	36.012	0.19851	36.012	35.921	36.12	0					12	6	3	0	0	0	0.28897	1	14012	14012		51.193	6.6616	1	221700	+		7272	14928	3876	3903	7430	7430					0.051814217520814054
DEYEKKSLYN	10	Unmodified	_DEYEKKSLYN_					0	0	0			REV__tr|U7T2S5|U7T2S5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00443PE=4SV=1	REV__tr|U7T2S5|U7T2S5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00443PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	645.3077392578125	2	644.806425	1287.5983	0.49817	0.00032122	-0.96634	-0.0006231	-0.46817	-0.00030188	644.8058410813438	35.747	0.23572	35.747	35.629	35.865	0					9	6	2	0	0	0	0.62235	1	13457	13457		31.53	3.6476	1	132630	+		7273	22118	3877	3904	7431	7431					-0.03399835635536874
DFAVNLFRL	9	Unmodified	_DFAVNLFRL_					0	0	0			REV__TBC1D31|p.F193Lfs*30|1|0.08|ENSG00000156787|chr8:123093646-123093646|T/-|frameshift_variant	REV__TBC1D31|p.F193Lfs*30|1|0.08|ENSG00000156787|chr8:123093646-123093646|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8052978515625	2	547.803291	1093.59203	1.8067	0.00098971	1.0411	0.00057033	2.8478	0.00156	547.804338554638	37.086	0.20883	37.086	36.991	37.2	0					13	6	3	0	0	0	0.25109	1	14478	14478		55.504	0	1	347780	+		7274	15640	3878	3905	7432	7432					0.04897735714234841
DFCVGLKGKL	10	Unmodified	_DFCVGLKGKL_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.29833984375	2	540.299527	1078.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.827	1	29.827	29.327	30.327	0								0	0	0	0.29594	1	10692	10692		31.53	0	1		+		7275	16068	3879	3906	7433	7433					0.04835260122285945
DFEDDFIPLP	10	Unmodified	_DFEDDFIPLP_					0	0	0		ENST00000441488.6_1_11:67925157-67938746:-|nuORF;ENSG00000110066|ENST00000304363|KMT5B	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.2792358398438	2	604.279512	1206.54447	0.034435	2.0808E-05	-0.40308	-0.00024358	-0.36865	-0.00022277	604.2791330391133	32.493	0.11858	32.493	32.421	32.54	0					4	2	2	0	0	0	0.73274	1	12266	12266		16.473	0.83134	1	102350			7276	2607	3880	3907	7434	7434					-0.05054008067281757
DFEEFAAQLED	11	Unmodified	_DFEEFAAQLED_					0	0	0			REV__ENST00000545777.1_1_11:67223622-67225073:+|nuORF	REV__ENST00000545777.1_1_11:67223622-67225073:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.52093505859375	3	438.522585	1312.54593	-0.38805	-0.00017017	-3.2988	-0.0014466	-3.6869	-0.0016168	438.5209483292482	26.385	0.21696	26.385	26.277	26.493	0					10	4	3	0	0	0	0.74458	1	9448	9448		23.378	0.81632	1	124000	+		7277	16621	3881	3908	7435	7435					-0.09784418769208969
DFETRIDEL	9	Unmodified	_DFETRIDEL_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.85247802734375	3	379.852266	1136.53497	0.01563	5.9369E-06	-0.054127	-2.056E-05	-0.038498	-1.4623E-05	379.8524541373847	26.314	0.23494	26.314	26.213	26.448	0					19	7	4	0	0	0	0.41113	1	7956	7956		40.778	7.9657	1	725540	+		7278	15633	3882	3909	7436	7436					-0.02783776352816858
DFETRIDEL	9	Unmodified	_DFETRIDEL_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.8526611328125	3	379.852266	1136.53497	0.17704	6.7248E-05	-0.04014	-1.5247E-05	0.1369	5.2001E-05	379.8524847858656	26.531	0.45109	26.531	26.395	26.847	0					35	10	6	0	0	0	0.17854	1	9149	9149		64.207	9.431	1	9859600	+		7279	15633	3882	3909	7437	7437					-0.02783776352816858
DFETRIDEL	9	Unmodified	_DFETRIDEL_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.85247802734375	3	379.852266	1136.53497	0.50861	0.0001932	-0.58573	-0.00022249	-0.077115	-2.9292E-05	379.8523119350031	26.517	0.41866	26.517	26.46	26.879	0					27	8	5	0	0	0	0.24334	1	9510	9510		56.434	12.057	1	3885600	+		7280	15633	3882	3909	7438	7438					-0.02783776352816858
DFETRIDEL	9	Unmodified	_DFETRIDEL_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.8525695800781	3	379.852266	1136.53497	0.45602	0.00017322	-0.10251	-3.8939E-05	0.35351	0.00013428	379.85235646168167	26.551	0.26712	26.551	26.443	26.71	0					14	5	4	0	0	0	0.44593	1	9527	9527		37.812	6.2817	1	1321900	+		7281	15633	3882	3909	7439	7439					-0.02783776352816858
DFETRIDEL	9	Unmodified	_DFETRIDEL_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.8524169921875	3	379.852266	1136.53497	3.2415	0.0012313	-3.323	-0.0012623	-0.081548	-3.0976E-05	379.85127546103007	26.477	0.72113	26.477	26.366	27.087	0					48	14	6	0	0	0	0.1424	1	9350	9350		69.628	7.9363	1	11366000	+		7282	15633	3882	3909	7440	7440					-0.02783776352816858
DFETRIDEL	9	Unmodified	_DFETRIDEL_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2754516601562	2	569.274761	1136.53497	3.4439	0.0019605	-2.5368	-0.0014441	0.90716	0.00051642	569.2736432376568	26.477	0.51886	26.477	26.366	26.885	0					33	10	5	0	0	0	0.085655	1	9368	9368		66.429	4.3219	1	6061900	+		7283	15633	3882	3909	7441	7441					-0.02783776352816858
DFEVDPFY	8	Unmodified	_DFEVDPFY_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2208862304688	2	516.221465	1030.42838	1.2391	0.00063964	-1.5185	-0.00078389	-0.27944	-0.00014425	516.2212611005435	35.99	0.93594	35.99	35.672	36.608	0					31	20	3	0	0	0	0.55361	1	13549	13549		54.765	5.5539	1	365160	+		7284	14419	3883	3910	7442	7442					-0.08561906847330647
DFFKERTSF	9	Unmodified	_DFFKERTSF_					0	0	0		ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7883911132812	2	588.787838	1175.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.242	1	38.242	37.742	38.742	0								0	0	0	0.16453	1	14996	14996		40.778	0	1				7285	1400	3884	3911	7443	7443					-0.019634623906767956
DFGEPRIQQ	9	Unmodified	_DFGEPRIQQ_					0	0	0		ENST00000427077.1_1_2:102957780-102959889:+|nuORF;nc|ENSG00000115602|Q01638-4|IL1RL1;nc|ENSG00000115602|Q01638-2|IL1RL1;ENSG00000115602|ENST00000233954|IL1RL1	ENST00000427077.1_1_2:102957780-102959889:+|nuORF	ENST00000427077.1_1_2:102957780-102959889:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2720947265625	2	545.269813	1088.52507	3.73	0.0020339	0.86543	0.00047189	4.5955	0.0025058	545.2702571157881	38.569	0.91135	38.569	38.421	39.332	0					52	19	3	0	0	0	0.27249	1	15161	15161		52.937	3.4952	1	1183300			7286	2925	3885	3912	7444	7444					-0.015649195675223382
DFGKTKLAK	9	Unmodified	_DFGKTKLAK_					0	0	0			REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29754638671875	2	504.297842	1006.58113	1.0284	0.00051861	-2.2319	-0.0011255	-1.2035	-0.00060691	504.29644124550185	37.828	0.99503	37.828	37.455	38.45	0					45	33	2	0	0	0	0.39215	1	14859	14859		42.396	3.1433	1	85096	+		7287	22121	3886	3913	7445	7445					0.0781033333993264
DFHLYGVNGPL	11	Unmodified	_DFHLYGVNGPL_					0	0	0			REV__RBP3|p.R443H|1|0.48|ENSG00000265203|chr10:47349812-47349812|G/A|missense_variant	REV__RBP3|p.R443H|1|0.48|ENSG00000265203|chr10:47349812-47349812|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	616.3109130859375	2	616.308938	1230.60332	3.0336	0.0018697	0.040964	2.5246E-05	3.0746	0.0018949	616.3091180697995	43.901	0.28614	43.901	43.791	44.077	0					27	10	4	0	0	0	0.27467	1	17577	17577		65.465	1.9315	1	593370	+		7288	21452	3887	3914	7446	7446					-0.0027548698228656576
DFIAQRSI	8	Unmodified	_DFIAQRSI_					0	0	0			REV__ENST00000478646.5_1_2:178494137-178540272:-|nuORF	REV__ENST00000478646.5_1_2:178494137-178540272:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7599182128906	2	475.258717	948.50288	-2.6801	-0.0012737	-2.6804	-0.0012739	-5.3605	-0.0025476	475.25560038732505	34.588	0.34723	34.588	34.431	34.779	0					20	10	3	0	0	0	0.64144	1	12237	12237		42.396	1.618	1	164060	+		7289	19566	3888	3915	7447	7447					0.026569007547209367
DFIDFNII	8	Unmodified	_DFIDFNII_					0	0	0		ENSG00000101695|ENST00000217740|RNF125	ENSG00000101695|ENST00000217740|RNF125	ENSG00000101695|ENST00000217740|RNF125	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.75360107421875	2	498.755475	995.496398	-2.1976	-0.001096	-2.147	-0.0010709	-4.3446	-0.0021669	498.7546120876123	28.391	0.32866	28.391	28.27	28.599	0					12	8	3	0	0	0	0.5676	1	9429	9429		53.351	7.3995	1	109780			7290	2133	3889	3916	7448	7448					-0.001530371966509847
DFIPTVRGIA	10	Unmodified	_DFIPTVRGIA_					0	0	0			REV__nc|ENSG00000143839|P00797-2|REN	REV__nc|ENSG00000143839|P00797-2|REN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.54144287109375	3	363.541475	1087.60259	-0.95594	-0.00034752	0.65962	0.0002398	-0.29632	-0.00010772	363.54176695535773	22.074	0.22739	22.074	21.978	22.206	0					16	7	3	0	0	0	0.68774	1	6434	6434		23.523	3.5259	1	316610	+		7291	15211	3890	3917	7449	7449					0.062297183686723656
DFIWGIGKQ	9	Unmodified	_DFIWGIGKQ_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;PRKCG|p.F614Sfs*41|1|0.2|ENSG00000126583|chr19:53906389-53906389|T/-|frameshift_variant	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2823486328125	2	532.282192	1062.54983	1.7128	0.00091171	-0.65169	-0.00034689	1.0611	0.00056482	532.2819265035919	44.417	0.54189	44.417	44.178	44.72	0					50	29	2	0	0	0	0.53083	1	17345	17345		29.15	6.1071	1	83517			7292	3482	3891	3918	7450	7450					0.021057603058579843
DFKPEEYPL	9	Unmodified	_DFKPEEYPL_					0	0	0		ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.8524169921875	3	379.853607	1136.53899	-2.1435	-0.00081422	-1.0948	-0.00041587	-3.2383	-0.0012301	379.8533180343472	26.378	0.54292	26.378	26.233	26.776	0					20	12	4	0	0	0	0.24095	1	8470	8470		56.721	11.699	1	1278700			7293	3984	3892	3919	7451	7451					-0.023816868590984086
DFKTRDAV	8	Unmodified	_DFKTRDAV_					0	0	0			REV__EXOC1|p.D504N|1|0.06|ENSG00000090989|chr4:55890357-55890357|G/A|missense_variant	REV__EXOC1|p.D504N|1|0.06|ENSG00000090989|chr4:55890357-55890357|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2479553222656	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.383	1	30.383	29.883	30.883	0								0	0	0	1.7419	1	10949	10949		53.351	0.41475	1		+		7294	13435	3893	3920	7452	7452					0.004923103750343216
DFLLDELVQ	9	Unmodified	_DFLLDELVQ_					0	0	0		MTRF1L|p.Y354F|1|0.07|ENSG00000112031|chr6:152989977-152989977|T/A|missense_variant	MTRF1L|p.Y354F|1|0.07|ENSG00000112031|chr6:152989977-152989977|T/A|missense_variant	MTRF1L|p.Y354F|1|0.07|ENSG00000112031|chr6:152989977-152989977|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2822265625	2	546.284597	1090.55464	-1.5002	-0.00081952	-3.5874	-0.0019598	-5.0876	-0.0027793	546.2824450265304	27.491	0.25445	27.491	27.361	27.616	0					10	6	2	0	0	0	0.18605	1	8992	8992		63.306	5.495	1	77774			7295	11387	3894	3921	7453	7453					0.012985996579345738
DFLQNVPFGY	10	Unmodified	_DFLQNVPFGY_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2908935546875	2	600.290214	1198.56587	2.0064	0.0012044	-0.59306	-0.00035601	1.4133	0.0008484	600.2897455722771	56.21	0.33207	56.21	56.087	56.419	0					36	20	2	0	0	0	0.60076	1	21139	21139		34.173	1.3601	1	60817	+		7296	15221	3895	3922	7454	7454					-0.025465782479159316
DFLQNVPFGY	10	Unmodified	_DFLQNVPFGY_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.29052734375	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.013	1	52.013	51.513	52.513	0								0	0	0	0.38797	1	20270	20270		34.173	5.023	1		+		7297	15221	3895	3922	7455	7455					-0.025465782479159316
DFNHNEPIK	9	Unmodified	_DFNHNEPIK_					0	0	0			REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.8494567871094	3	371.848967	1112.52507	0.78168	0.00029067	-0.70395	-0.00026176	0.077732	2.8905E-05	371.84908033951405	29.737	0.44361	29.737	29.655	30.098	0					18	11	4	0	0	0	0.25109	1	10663	10663		52.937	14.131	1	483900	+		7298	12725	3896	3923	7456	7456					-0.026689195675544397
DFQVGVTVL	9	Unmodified	_DFQVGVTVL_					0	0	0		ENST00000325076.9_1_20:34190424-34191756:-|nuORF	ENST00000325076.9_1_20:34190424-34191756:-|nuORF	ENST00000325076.9_1_20:34190424-34191756:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2684631347656	2	489.26875	976.522947	-0.15737	-7.6996E-05	0.53418	0.00026136	0.37681	0.00018436	489.2686914350529	29.13	0.43313	29.13	28.836	29.27	0					22	11	3	0	0	0	0.38666	1	9771	9771		35.618	0	1	119900			7299	8639	3897	3924	7457	7457					0.03374651694673503
DFRNALLSL	9	Unmodified	_DFRNALLSL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7928466796875	2	524.792924	1047.57129	0.58603	0.00030754	0.010412	5.4641E-06	0.59644	0.00031301	524.7929179391002	26.117	0.35593	26.117	25.968	26.323	0					18	11	2	0	0	0	0.4966	1	8154	8154		32.812	0	1	289490			7300	3957	3898	3925	7458	7458					0.049411453345555856
DFRPKKAGKH	10	Unmodified	_DFRPKKAGKH_					0	0	0			REV__MCU|p.S310P|1|0.2|ENSG00000156026|chr10:72884332-72884332|T/C|missense_variant	REV__MCU|p.S310P|1|0.2|ENSG00000156026|chr10:72884332-72884332|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.22723388671875	3	395.228001	1182.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.172	1	14.172	13.672	14.672	0								0	0	0	0.4146	1	3618	3618		26.063	7.5323	1		+		7301	20872	3899	3926	7459	7459					0.07815034102691243
DFSDILLNTY	10	Unmodified	_DFSDILLNTY_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.793701171875	2	600.792786	1199.57102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.451	1	43.451	42.951	43.951	0								0	0	0	0.34115	1	16993	16993		44.377	6.5657	1				7302	22615	3900	3927	7460	7460					-0.020783191759164765
DFTGRFCQVP	10	Unmodified	_DFTGRFCQVP_					0	0	0		LTBP3|p.L294Sfs*94|1|0.48|ENSG00000168056|chr11:65553515-65553515|G/-|frameshift_variant;LTBP3|p.D596*|1|0.24|ENSG00000168056|chr11:65547981-65547982|-/G|frameshift_variant;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3	LTBP3|p.L294Sfs*94|1|0.48|ENSG00000168056|chr11:65553515-65553515|G/-|frameshift_variant	LTBP3|p.L294Sfs*94|1|0.48|ENSG00000168056|chr11:65553515-65553515|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.2736206054688	2	585.274041	1168.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.2	1	17.2	16.7	17.7	0								0	0	0	0.4201	1	4267	4267		14.865	0.72775	1				7303	6051	3901	3928	7461	7461					-0.04399688922558198
DFTHSPAI	8	Unmodified	_DFTHSPAI_					0	0	0			REV__tr|U7SLB4|U7SLB4_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01957PE=4SV=1	REV__tr|U7SLB4|U7SLB4_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01957PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.21612548828125	2	444.216517	886.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.536	1	30.536	30.036	31.036	0								0	0	0	1.7419	1	10411	10411		40.573	0	1		+		7304	21770	3902	3929	7462	7462					-0.029270500620668827
DFVINSCKI	9	Unmodified	_DFVINSCKI_					0	0	0		ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7673950195312	2	519.76806	1037.52157	0.99665	0.00051803	-3.2489	-0.0016887	-2.2522	-0.0011706	519.7664539366205	34.494	0.4467	34.494	34.281	34.728	0					27	13	4	0	0	0	0.42902	1	12197	12197		39.253	0.44669	1	721180			7305	7454	3903	3930	7463	7463					0.004306943342726299
DFVNDVYVY	9	Unmodified	_DFVNDVYVY_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ENST00000498461.1_1_10:45938876-45939636:+|nuORF	nc|ENSG00000012779|P09917-2|ALOX5;ENST00000498461.1_1_10:45938876-45939636:+|nuORF	nc|ENSG00000012779|P09917-2|ALOX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.76123046875	2	567.261122	1132.50769	0.19635	0.00011138	-2.5824	-0.0014649	-2.386	-0.0013535	567.2601305583615	39.078	0.25399	39.078	38.998	39.252	0					25	9	4	0	0	0	0.17854	1	14853	14853		64.207	7.4862	1	289940			7306	1058;10137	3904	3931	7464	7464					-0.05326259893195129
DGAALTKK	8	Unmodified	_DGAALTKK_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.2345886230469	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.108	1	13.108	12.608	13.608	0								0	0	0	1.7419	1	2909	2909		35.618	0	1				7307	5317	3905	3932	7465	7465					0.04573826834655392
DGADVLAQQI	10	Unmodified	_DGADVLAQQI_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2634887695312	2	515.264196	1028.51384	0.77276	0.00039818	-1.1982	-0.0006174	-0.42546	-0.00021923	515.2633872209747	34.518	0.12801	34.518	34.424	34.552	0					5	3	2	0	0	0	0.50881	1	13318	13318		44.377	4.319	1	44405	+		7308	13913	3906	3933	7466	7466					0.0007225833833217621
DGAGCRETLS	10	Unmodified	_DGAGCRETLS_					0	0	0			REV__ENST00000426537.1_1_21:47705768-47706077:-|nuORF	REV__ENST00000426537.1_1_21:47705768-47706077:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7259521484375	2	504.724381	1007.43421	1.2131	0.00061229	1.3938	0.00070349	2.6069	0.0013158	504.7250353194412	27.704	0.41642	27.704	27.543	27.959	0					15	8	2	0	0	0	0.24256	1	9960	9960		74.255	2.3776	1	663990	+		7309	19116	3907	3934	7467	7467					-0.06921131607316511
DGAGEEEDGL	10	Unmodified	_DGAGEEEDGL_					0	0	0			REV__ENST00000476241.2_2_1:245025757-245027609:-|nuORF	REV__ENST00000476241.2_2_1:245025757-245027609:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.19647216796875	2	496.196176	990.377799	0.72706	0.00036076	-0.57075	-0.00028321	0.15631	7.7558E-05	496.19608529962466	26.931	0.25093	26.931	26.847	27.097	0					14	6	3	0	0	0	0.41335	1	9360	9360		54.776	13.998	1	502580	+		7310	15533	3908	3935	7468	7468					-0.11777480962973641
DGAHLATL	8	Unmodified	_DGAHLATL_					0	0	0			REV__ENST00000281523.7_1_3:21792410-21792695:-|nuORF	REV__ENST00000281523.7_1_3:21792410-21792695:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.21136474609375	2	399.211235	796.407917	-0.13743	-5.4863E-05	0.28911	0.00011542	0.15169	6.0555E-05	399.2113205396375	19.912	0.35698	19.912	19.743	20.1	0					19	8	3	0	0	0	0.61938	1	5474	5474		45.952	5.3793	1	455810	+		7311	18129	3909	3936	7469	7469					0.0015696728352168066
DGALARPAC	9	Unmodified	_DGALARPAC_					0	0	0		ENST00000569796.1_1_16:2281646-2281928:+|nuORF	ENST00000569796.1_1_16:2281646-2281928:+|nuORF	ENST00000569796.1_1_16:2281646-2281928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2156982421875	2	437.215995	872.417436	-0.634	-0.00027719	-0.42893	-0.00018753	-1.0629	-0.00046473	437.2160707771111	19.454	0.19255	19.454	19.356	19.548	0					6	4	2	0	0	0	0.5879	1	5297	5297		23.042	0	1	70345			7312	10786	3910	3937	7470	7470					-0.023875877026057424
DGAPSATAPQP	11	Unmodified	_DGAPSATAPQP_					0	0	0			REV__ENST00000557978.6_1_19:19672836-19680924:-|nuORF	REV__ENST00000557978.6_1_19:19672836-19680924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2695007324219	2	506.240721	1010.46689	-0.038641	-1.9562E-05	-3.1658	-0.0016026	-3.2044	-0.0016222	506.7404016128322	11.865	0.92038	11.865	11.766	12.686	0					98	31	4	0	0	0	0.63398	1	2426	2426		33.922	2.3918	1	9138600	+		7313	13794	3911	3938	7471	7471					-0.03792601212819591
DGAQIAKV	8	Unmodified	_DGAQIAKV_					0	0	0		ENSG00000145681|ENST00000274341|HAPLN1	ENSG00000145681|ENST00000274341|HAPLN1	ENSG00000145681|ENST00000274341|HAPLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.227294921875	2	401.226885	800.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.91	1	15.91	15.41	16.41	0								0	0	0	1.7419	1	3660	3660		31.955	0	1				7314	4682	3912	3939	7472	7472					0.03101540317618401
DGARKEAQI	9	Unmodified	_DGARKEAQI_					0	0	0		ENST00000510479.5_1_5:176948978-176959043:-|nuORF	ENST00000510479.5_1_5:176948978-176959043:-|nuORF	ENST00000510479.5_1_5:176948978-176959043:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2659606933594	2	494.26453	986.514508	-0.05513	-2.7249E-05	2.9509	0.0014585	2.8958	0.0014313	494.26558240424913	23.019	0.098093	23.019	22.968	23.067	0					5	3	2	0	0	0	0.44593	1	6604	6604		37.812	2.1932	1	33306			7315	10230	3913	3940	7473	7473					0.020710977780368012
DGARLKKCF	9	Unmodified	_DGARLKKCF_					0	0	0		ENSG00000185982|ENST00000334391|DEFB128	ENSG00000185982|ENST00000334391|DEFB128	ENSG00000185982|ENST00000334391|DEFB128	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2800903320312	2	519.281669	1036.54878	1.429	0.00074205	-3.6242	-0.001882	-2.1952	-0.0011399	519.2792544297112	40.003	0.089355	40.003	39.933	40.023	0					7	5	2	0	0	0	0.33044	1	12953	12953		47.657	5.2612	1	50204			7316	7118	3914	3941	7474	7474					0.03197222665312438
DGARLSNM	8	Oxidation (M)	_DGARLSNM(Oxidation (M))_		DGARLSNM(1)		DGARLSNM(85)	0	0	1			REV__nc|ENSG00000211942|P01766|IGHV3-13	REV__nc|ENSG00000211942|P01766|IGHV3-13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.2032470703125	2	440.203084	878.391615	0.57891	0.00025484	-0.25192	-0.0001109	0.32699	0.00014394	440.20291447750543	39.825	0.79107	39.825	39.509	40.301	0					85	28	4	0	0	0	0.29152	1	15740	15740		85.359	18.93	1	3724900	+		7317	21205	3915	3942	7475	7475		763			-0.05244481944873769
DGASWNRK	8	Unmodified	_DGASWNRK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2295227050781	2	467.230491	932.446428	-0.50544	-0.00023616	-1.5541	-0.00072612	-2.0595	-0.00096228	467.2298387139667	14.466	0.21623	14.466	14.358	14.575	0					6	4	2	0	0	0	0.41952	1	3594	3594		68.485	4.2774	1	158200			7318	3092	3916	3943	7476	7476					-0.02249727081959918
DGATALKW	8	Unmodified	_DGATALKW_					0	0	0			REV__nc|ENSG00000105676|Q6NXE6-2|ARMC6	REV__nc|ENSG00000105676|Q6NXE6-2|ARMC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2267150878906	2	431.226885	860.439217	-0.51001	-0.00021993	0.038857	1.6756E-05	-0.47115	-0.00020317	431.22690573150004	19.207	0.31471	19.207	18.993	19.308	0					11	7	2	0	0	0	0.63077	1	5770	5770		44.117	6.9577	1	448950	+		7319	13791	3917	3944	7477	7477					0.0034154031760635917
DGAVFLQVL	9	Unmodified	_DGAVFLQVL_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2710876464844	2	481.271293	960.528032	-0.13621	-6.5555E-05	-0.72918	-0.00035093	-0.86539	-0.00041649	481.27110335584246	36.117	0.23863	36.117	36.008	36.247	0					9	6	2	0	0	0	0.22377	1	13608	13608		58.782	7.4465	1	115560	+		7320	17133	3918	3945	7478	7478					0.04618955557270965
DGAVVWPRLLE	11	Unmodified	_DGAVVWPRLLE_					0	0	0			REV__ENST00000288532.10_1_12:120966855-120966963:-|nuORF	REV__ENST00000288532.10_1_12:120966855-120966963:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.9002990722656	3	418.89955	1253.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.296	1	22.296	21.796	22.796	0								0	0	0	0.45674	1	7220	7220		19.263	5.1767	1		+		7321	18148	3919	3946	7479	7479					0.06013061460203062
DGCLEKIK	8	Carbamidomethyl (C)	_DGC(Carbamidomethyl (C))LEKIK_	DGC(1)LEKIK		DGC(80)LEKIK		0	1	0			REV__tr|U7T739|U7T739_FUSNUNTPpyrophosphohydrolaseMazGputativecatalyticcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00106PE=4SV=1	REV__tr|U7T739|U7T739_FUSNUNTPpyrophosphohydrolaseMazGputativecatalyticcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00106PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.75213623046875	2	481.75241	961.490267	-0.10501	-5.0589E-05	-0.52674	-0.00025376	-0.63175	-0.00030435	481.75203821576247	28.39	0.20743	28.39	28.291	28.499	0					10	4	3	0	0	0	0.32597	1	10431	10431		79.713	10.085	1	417610	+		7322	22216	3920	3947	7480	7480	747				0.007981213001698961
DGCSVSFEPQ	10	Unmodified	_DGCSVSFEPQ_					0	0	0			REV__ITGB4|p.R1003C|1|0.39|ENSG00000132470|chr17:75743757-75743757|C/T|missense_variant	REV__ITGB4|p.R1003C|1|0.39|ENSG00000132470|chr17:75743757-75743757|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7182006835938	2	534.718764	1067.42298	0.29065	0.00015542	-0.6824	-0.00036489	-0.39175	-0.00020947	534.7182871205911	13.184	0.32994	13.184	13.001	13.33	0					10	7	2	0	0	0	0.62235	1	3159	3159		31.53	7.3271	1	1179900	+		7323	20768	3921	3948	7481	7481					-0.10803953701429236
DGDFSYRQ	8	Unmodified	_DGDFSYRQ_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2135925292969	2	494.211963	986.409374	2.7979	0.0013828	0.11841	5.8518E-05	2.9163	0.0014413	494.21225288012954	18.921	0.34478	18.921	18.784	19.129	0					23	7	4	0	0	0	0.44433	1	5743	5743		65.803	12.452	1	1342400	+		7324	14507	3922	3949	7482	7482					-0.08437443418370094
DGDSKDKFGSE	11	Unmodified	_DGDSKDKFGSE_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.5060119628906	3	395.507047	1183.49931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.422	1	13.422	12.922	13.922	0								0	0	0	0.38772	1	3264	3264		39.873	2.365	1		+		7325	16193	3923	3950	7483	7483					-0.08509858600473308
DGEAKKPL	8	Unmodified	_DGEAKKPL_					0	0	0			REV__TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	REV__TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2402648925781	2	429.239993	856.465432	0.20865	8.9561E-05	0.020976	9.0039E-06	0.22963	9.8565E-05	429.24006537673415	20.023	0.10854	20.023	19.97	20.079	0					5	3	2	0	0	0	0.63077	1	5290	5290		44.117	6.9577	1	50535	+		7326	14411	3924	3951	7484	7484					0.03145809489092244
DGEEETSQP	9	Unmodified	_DGEEETSQP_					0	0	0		ENST00000530791.5_1_11:65687869-65688903:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687869-65688903:+|nuORF	ENST00000530791.5_1_11:65687869-65688903:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.19622802734375	2	496.196176	990.377799	0.1226	6.0832E-05	0.53596	0.00026594	0.65856	0.00032677	496.19638418405896	26.78	0.23919	26.78	26.639	26.878	0					8	5	2	0	0	0	0.2873	1	8684	8684		51.335	7.2187	1	90866			7327	6564	3925	3952	7485	7485					-0.11777480962973641
DGEGATGIFTK	11	Unmodified	_DGEGATGIFTK_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7770385742188	2	548.269478	1094.5244	0.29838	0.00016359	0.72852	0.00039942	1.0269	0.00056302	548.2697909664467	39.453	0.64883	39.453	39.207	39.856	0					43	22	3	0	0	0	0.65907	1	15447	15447		31.53	1.2121	1	2604600			7328	23043	3926	3953	7486	7486					-0.019077590072356543
DGENLNLGECM	11	Unmodified	_DGENLNLGECM_					0	0	0			REV__tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	REV__tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.740478515625	2	597.741913	1193.46927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.802	1	14.802	14.302	15.302	0								0	0	0	0.3769	1	3264	3264		41.427	5.8083	1		+		7329	22018	3927	3954	7487	7487					-0.11972256861668029
DGEQRISL	8	Unmodified	_DGEQRISL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2374267578125	2	459.237981	916.461409	-2.6162	-0.0012015	1.7733	0.00081435	-0.84297	-0.00038712	459.23872895039284	30.721	0.21981	30.721	30.644	30.864	0					11	6	2	0	0	0	0.49216	1	10501	10501		60.972	0	1	236780			7330	3430	3928	3955	7488	7488					-0.0001628000460414114
DGFAQRLF	8	Unmodified	_DGFAQRLF_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2452697753906	2	477.245609	952.476666	-0.34216	-0.0001633	0.33217	0.00015853	-0.0099913	-4.7683E-06	477.24583593566643	36.134	0.30214	36.134	35.98	36.282	0					19	10	3	0	0	0	0.76283	1	12902	12902		25.45	0.93098	1	81009	+		7331	14711	3929	3956	7489	7489					-0.0014736841676494805
DGGAISLI	8	Unmodified	_DGGAISLI_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20947265625	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.267	1	48.267	47.767	48.767	0								0	0	0	1.7419	1	19195	19195		28.254	2.8041	1		+		7332	14527	3930	3957	7490	7490					0.019344490519983992
DGGKIIQQ	8	Unmodified	_DGGKIIQQ_					0	0	0		ENST00000506712.1_1_5:32710768-32783175:+|nuORF;nc|ENSG00000113389|P17342-3|NPR3;nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	ENST00000506712.1_1_5:32710768-32783175:+|nuORF	ENST00000506712.1_1_5:32710768-32783175:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.73699951171875	2	429.737617	857.460681	0.19618	8.4308E-05	-0.20297	-8.7226E-05	-0.0067904	-2.9181E-06	429.73756578842676	14.902	0.2567	14.902	14.738	14.994	0					18	11	2	0	0	0	0.66372	1	3109	3109		38.806	1.647	1	200080			7333	2800	3931	3958	7491	7491					0.026249253463333844
DGGLPIGHAK	10	Unmodified	_DGGLPIGHAK_					0	0	0			REV__ENST00000462392.5_1_2:131104212-131104311:+|nuORF	REV__ENST00000462392.5_1_2:131104212-131104311:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.1784362792969	3	322.178536	963.513779	0.5588	0.00018003	-2.1152	-0.00068148	-1.5564	-0.00050144	322.17787325808865	14.365	0.2431	14.365	14.251	14.494	0					12	5	4	0	0	0	0.65213	1	3717	3717		32.751	0	1	240540	+		7334	19387	3932	3959	7492	7492					0.030563031290057552
DGHELQLDLTN	11	Unmodified	_DGHELQLDLTN_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	627.7996826171875	2	627.801674	1253.58879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.192	1	27.192	26.692	27.692	0								0	0	0	0.45674	1	8354	8354		23.523	3.5259	1		+		7335	13974	3933	3960	7493	7493					-0.02785603921074653
DGHGDQGRR	9	Unmodified	_DGHGDQGRR_					0	0	0			REV__ENSG00000203786|ENST00000606109|KPRP	REV__ENSG00000203786|ENST00000606109|KPRP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2327575683594	2	499.231553	996.448553	2.9182	0.0014569	-0.74163	-0.00037025	2.1766	0.0010866	499.2313189638985	17.115	0.27033	17.115	17.056	17.326	0					14	5	4	0	0	0	0.39215	1	4887	4887		42.396	42.396	1	2592600	+		7336	17460	3934	3961	7494	7494					-0.04981298344137031
DGKEYVSK	8	Unmodified	_DGKEYVSK_					0	0	0			REV__chr1:1699559-1699942|175|18.99|0.0|20.86|+|0|None,MMP23A|2	REV__chr1:1699559-1699942|175|18.99|0.0|20.86|+|0|None,MMP23A|2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2344665527344	2	463.234907	924.455261	-0.7563	-0.00035034	-0.14171	-6.5646E-05	-0.89801	-0.00041599	463.2347109944954	20.86	0.15216	20.86	20.786	20.938	0					7	5	2	0	0	0	0.77246	1	5893	5893		24.203	1.1603	1	73770	+		7337	12462	3935	3962	7495	7495					-0.009987982361394643
DGKKKHIY	8	Unmodified	_DGKKKHIY_					0	0	0			REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.19097900390625	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.949	1	50.949	50.449	51.449	0								0	0	0	1.7419	1	18275	18275		11.511	0.64546	1		+		7338	22089	3936	3963	7496	7496					0.0558918002569726
DGKLVRELYLQ	11	Unmodified	_DGKLVRELYLQ_					0	0	0			REV__ENSG00000138071|ENST00000260641|ACTR2	REV__ENSG00000138071|ENST00000260641|ACTR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2541809082031	3	445.253993	1332.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.699	1	19.699	19.199	20.199	0								0	0	0	0.43806	1	5146	5146		28.577	0.49524	1		+		7339	14953	3937	3964	7497	7497					0.08709002177420189
DGKLVRELYLQ	11	Unmodified	_DGKLVRELYLQ_					0	0	0			REV__ENSG00000138071|ENST00000260641|ACTR2	REV__ENSG00000138071|ENST00000260641|ACTR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2544250488281	3	445.253993	1332.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.754	1	19.754	19.254	20.254	0								0	0	0	0.32536	1	5405	5405		48.602	6.2635	1		+		7340	14953	3937	3964	7498	7498					0.08709002177420189
DGKLVRELYLQ	11	Unmodified	_DGKLVRELYLQ_					0	0	0			REV__ENSG00000138071|ENST00000260641|ACTR2	REV__ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2538146972656	3	445.253993	1332.74015	-0.18586	-8.2756E-05	-0.31341	-0.00013955	-0.49928	-0.00022231	445.2538420154945	19.885	0.31967	19.885	19.726	20.045	0					17	6	4	0	0	0	0.6208	1	6371	6371		35.178	1.0917	1	1132400	+		7341	14953	3937	3964	7499	7499					0.08709002177420189
DGKPGRQSR	9	Unmodified	_DGKPGRQSR_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7662658691406	2	500.767771	999.52099	-2.1242	-0.0010637	-0.88684	-0.0004441	-3.011	-0.0015078	500.7673230772455	14.416	0.14519	14.416	14.362	14.508	0					13	6	3	0	0	0	0.19952	1	3055	3055		54.776	54.776	1	264270			7342	292	3938	3965	7500	7500					0.021210357294194182
DGKREPLLSLL	11	Unmodified	_DGKREPLLSLL_					0	0	0		ENSG00000102243|ENST00000370634|VGLL1	ENSG00000102243|ENST00000370634|VGLL1	ENSG00000102243|ENST00000370634|VGLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.246826171875	3	414.246839	1239.71869	-0.91882	-0.00038062	0.76536	0.00031705	-0.15346	-6.3572E-05	414.24700580740046	27.183	0.29124	27.183	27.065	27.356	0					25	10	3	0	0	0	0.69983	1	8615	8615		27.644	5.0823	1	266080			7343	2162	3939	3966	7501	7501					0.1084161714873062
DGKTIKLSG	9	Unmodified	_DGKTIKLSG_					0	0	0		nc|ENSG00000292343|Q02040-2|AKAP17A;nc|ENSG00000292343|Q02040-3|AKAP17A;ENSG00000197976|ENST00000313871|AKAP17A	nc|ENSG00000292343|Q02040-2|AKAP17A	nc|ENSG00000292343|Q02040-2|AKAP17A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7662353515625	2	459.766374	917.518196	0.88132	0.0004052	-1.2173	-0.00055965	-0.33594	-0.00015445	459.7658209038026	26.443	0.22113	26.443	26.332	26.553	0					9	4	3	0	0	0	0.36892	1	9352	9352		44.377	3.599	1	1503000			7344	7515	3940	3967	7502	7502					0.05613767551915316
DGKVPIPK	8	Unmodified	_DGKVPIPK_					0	0	0			REV__ENSG00000095015|ENST00000399503|MAP3K1	REV__ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.2604675292969	2	427.260728	852.506903	-0.48072	-0.00020539	0.29623	0.00012657	-0.18449	-7.8824E-05	427.26078392668126	24.419	0.51535	24.419	24.213	24.729	0					17	10	2	0	0	0	0.49216	1	8559	8559		60.972	6.2073	1	144990	+		7345	13465	3941	3968	7503	7503					0.07474990248431368
DGKVPKGYT	9	Unmodified	_DGKVPKGYT_					0	0	0			REV__CD109|p.Q424Kfs*20|1|0.29|ENSG00000156535|chr6:73766088-73766088|C/-|frameshift_variant	REV__CD109|p.Q424Kfs*20|1|0.29|ENSG00000156535|chr6:73766088-73766088|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.757568359375	2	482.758549	963.502546	-0.27702	-0.00013373	-0.28602	-0.00013808	-0.56304	-0.00027181	482.7584128952689	24.873	0.49955	24.873	24.643	25.142	0					34	11	4	0	0	0	0.56424	1	7937	7937		25.574	1.0549	1	1066000	+		7346	12380	3942	3969	7504	7504					0.019334810348709652
DGLAEAKR	8	Unmodified	_DGLAEAKR_					0	0	0			REV__CCDC88B|p.E747G|1|0.28|ENSG00000168071|chr11:64344781-64344781|A/G|missense_variant	REV__CCDC88B|p.E747G|1|0.28|ENSG00000168071|chr11:64344781-64344781|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2351379394531	2	430.235242	858.45593	0.21871	9.4098E-05	0.38058	0.00016374	0.5993	0.00025784	430.23537102764976	18.985	0.16891	18.985	18.903	19.071	0					6	4	2	0	0	0	0.27512	1	5639	5639		90.777	5.8611	1	268120	+		7347	12369	3943	3970	7505	7505					0.02104041203574525
DGLLPTWLP	9	Unmodified	_DGLLPTWLP_					0	0	0			REV__ENST00000541574.1_1_12:122018908-122019040:+|nuORF	REV__ENST00000541574.1_1_12:122018908-122019040:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.27813720703125	2	506.279118	1010.54368	-1.9526	-0.00098854	-0.48171	-0.00024388	-2.4343	-0.0012324	506.2789239908096	39.43	0.2018	39.43	39.361	39.563	0					21	11	3	0	0	0	0.35045	1	14046	14046		45.952	1.8352	1	90703	+		7348	20138	3944	3971	7506	7506					0.03883242074334703
DGLLSVEKR	9	Unmodified	_DGLLSVEKR_					0	0	0			REV__ENST00000398645.6_1_11:67024848-67025070:+|nuORF	REV__ENST00000398645.6_1_11:67024848-67025070:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.79229736328125	2	508.790381	1015.56621	2.9933	0.001523	-0.92468	-0.00047047	2.0687	0.0010525	508.79070647392894	43.538	0.26263	43.538	43.437	43.699	0					14	8	3	0	0	0	0.27123	1	17417	17417		45.972	17.891	1	177830	+		7349	18926	3945	3972	7507	7507					0.05904841471954114
DGLQITLGL	9	Unmodified	_DGLQITLGL_					0	0	0		ENST00000377689.2_1_9:38527126-38527906:+|nuORF;nc|ENSG00000176007|B1ANY3|FAM220BP;ENST00000395253.3_1_9:99884091-99884715:+|nuORF;ENSG00000178397|ENST00000313324|FAM220A	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.76654052734375	2	465.26875	928.522947	-2.315	-0.0010771	0.76846	0.00035754	-1.5465	-0.00071954	465.2694454953348	22.948	0.22403	22.948	22.855	23.079	0					8	5	2	0	0	0	0.43426	1	6968	6968		38.806	3.6054	1	294450			7350	9054	3946	3973	7508	7508					0.055826516946467564
DGLQLTPA	8	Unmodified	_DGLQLTPA_					0	0	0		nc|ENSG00000051341|O75417-2|POLQ;POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant;POLQ|p.H2496Tfs*59|1|0.11|ENSG00000051341|chr3:121436179-121436179|G/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ	nc|ENSG00000051341|O75417-2|POLQ	nc|ENSG00000051341|O75417-2|POLQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7190246582031	2	407.718893	813.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.23	1	15.23	14.73	15.73	0								0	0	0	1.7419	1	3889	3889		19.36	0	1				7351	1254	3947	3974	7509	7509					0.00905834080697332
DGLTALHV	8	Unmodified	_DGLTALHV_					0	0	0		ENSG00000069399|ENST00000164227|BCL3;ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.22686767578125	2	413.226885	824.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.272	1	15.272	14.772	15.772	0								0	0	0	1.7419	1	3294	3294		20.482	0	1				7352	1434	3948	3975	7510	7510					0.019975403176090367
DGLWTTIT	8	Unmodified	_DGLWTTIT_					0	0	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211892|P01861|IGHG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.7336120605469	2	453.732	905.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.894	1	36.894	36.394	37.394	0								0	0	0	1.7419	1	13950	13950		31.955	2.8053	1				7353	11750;11748	3949	3976	7511	7511					-0.007058967478201339
DGMPGTPGLK	10	Unmodified	_DGMPGTPGLK_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;COL4A2|p.P1057Lfs*10|1|0.18|ENSG00000134871|chr13:110485794-110485794|C/-|frameshift_variant	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7430725097656	2	486.744585	971.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.447	1	29.447	28.947	29.947	0								0	0	0	0.34115	1	10788	10788		44.377	1.981	1				7354	3947	3950	3977	7512	7512					-0.01226165216883146
DGNQVWLYA	9	Unmodified	_DGNQVWLYA_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2532958984375	2	533.253631	1064.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.831	1	14.831	14.331	15.331	0								0	0	0	0.35899	1	3121	3121		23.042	0	1				7355	4548	3951	3978	7513	7513					-0.036957069705295
DGPRPWLR	8	Unmodified	_DGPRPWLR_					0	0	0		ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.8500061035156	3	332.850643	995.530098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.833	1	17.833	17.333	18.333	0								0	0	0	1.7419	1	4332	4332		30.504	4.4403	1				7356	7334	3952	3979	7514	7514					0.032154290857420165
DGPRVSVS	8	Unmodified	_DGPRVSVS_					0	0	0			REV__ENST00000568396.2_1_16:67881454-67899118:+|nuORF	REV__ENST00000568396.2_1_16:67881454-67899118:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.7148132324219	2	408.714142	815.413731	0.99006	0.00040465	0.5345	0.00021846	1.5246	0.00062311	408.71435823216086	12.541	0.07972	12.541	12.502	12.582	0					4	2	2	0	0	0	0.76283	1	2672	2672		25.45	4.9683	1	62770	+		7357	20360	3953	3980	7515	7515					-0.0013593420479764973
DGPTKTHKLE	10	Unmodified	_DGPTKTHKLE_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.867919921875	3	375.868139	1124.58259	-0.3833	-0.00014407	-0.032956	-1.2387E-05	-0.41625	-0.00015646	375.8680581041245	14.466	0.11839	14.466	14.407	14.525	0					4	2	2	0	0	0	0.63224	1	3617	3617		35.178	13.492	1	183940			7358	6655	3954	3981	7516	7516					0.025279226380462205
DGPTRLQM	8	Unmodified	_DGPTRLQM_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2281188964844	2	459.229102	916.443651	-2.6173	-0.0012019	1.5309	0.00070303	-1.0864	-0.00049889	459.2297091711555	13.069	0.074875	13.069	13.022	13.097	0					5	3	2	0	0	0	0.59411	1	2592	2592		50.025	0	1	54756	+		7359	13050	3955	3982	7517	7517					-0.017913185311272173
DGPVMQGLRI	10	Unmodified	_DGPVMQGLRI_					0	0	0			REV__ENST00000332012.5_1_17:79278372-79278921:-|nuORF	REV__ENST00000332012.5_1_17:79278372-79278921:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.292724609375	2	543.292233	1084.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.852	1	34.852	34.352	35.352	0								0	0	0	0.26105	1	13401	13401		56.721	1.9447	1		+		7360	18386	3956	3983	7518	7518					0.031011879741527082
DGQRCRPR	8	Carbamidomethyl (C)	_DGQRC(Carbamidomethyl (C))RPR_	DGQRC(1)RPR		DGQRC(59)RPR		0	1	0		ENST00000535977.5_1_16:678381-678519:+|nuORF	ENST00000535977.5_1_16:678381-678519:+|nuORF	ENST00000535977.5_1_16:678381-678519:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.75927734375	2	522.759424	1043.50429	-1.2971	-0.00067805	1.3756	0.00071909	0.078507	4.104E-05	522.7600148986053	29.498	0.24969	29.498	29.405	29.655	0					13	6	3	0	0	0	0.51384	1	9935	9935		58.782	7.4465	1	409990			7361	10485	3957	3984	7519	7519	425				-0.01571788428191212
DGQSPSARAGV	11	Unmodified	_DGQSPSARAGV_					0	0	0			REV__nc|ENSG00000148516|P37275-3|ZEB1	REV__nc|ENSG00000148516|P37275-3|ZEB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7590942382812	2	522.757069	1043.49959	3.4052	0.0017801	0.74345	0.00038865	4.1486	0.0021687	522.7574009705837	29.672	0.31319	29.672	29.566	29.879	0					12	6	2	0	0	0	0.30836	1	10889	10889		61.691	1.7605	1	3422400	+		7362	15389	3958	3985	7520	7520					-0.020423940899490844
DGRAQTGIHL	10	Unmodified	_DGRAQTGIHL_					0	0	0			REV__OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant	REV__OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.5245666503906	3	356.524595	1066.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.291	1	20.291	19.791	20.791	0								0	0	0	0.4201	1	6271	6271		21.686	0	1		+		7363	16747	3959	3986	7521	7521					0.021341890436588073
DGRDGAPGAP	10	Unmodified	_DGRDGAPGAP_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.7138366699219	2	456.712131	911.409708	4.2625	0.0019467	0.35893	0.00016393	4.6215	0.0021107	456.7122256870378	28.977	0.4819	28.977	28.72	29.202	0					26	18	2	0	0	0	0.54197	1	9354	9354		40.778	0.20554	1	40022			7364	7861	3960	3987	7522	7522					-0.0495402369851945
DGREQLDTY	9	Unmodified	_DGREQLDTY_					0	0	0			REV__nc|ENSG00000152595|Q9NQ76-2|MEPE	REV__nc|ENSG00000152595|Q9NQ76-2|MEPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7511596679688	2	548.74891	1095.48327	3.7996	0.002085	0.76002	0.00041706	4.5596	0.0025021	548.7492106147514	31.843	0.62027	31.843	31.735	32.355	0					30	12	4	0	0	0	0.0406	1	11956	11956		98.629	45.693	1	3230900	+		7365	21067	3961	3988	7523	7523					-0.06065520046695383
DGRFAGLTS	9	Unmodified	_DGRFAGLTS_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.233642578125	2	462.232699	922.450845	-0.2342	-0.00010826	2.2762	0.0010521	2.042	0.00094386	462.2339335551657	20.133	0.1835	20.133	20.051	20.234	0					7	4	2	0	0	0	0.22377	1	5615	5615		58.782	5.4305	1	89319			7366	1705	3962	3989	7524	7524					-0.013482626590416658
DGRQGAARVA	10	Unmodified	_DGRQGAARVA_					0	0	0			REV__ENST00000405515.5_2_11:67957596-67981223:-|nuORF	REV__ENST00000405515.5_2_11:67957596-67981223:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.1796875	3	334.18094	999.52099	0.38551	0.00012883	-4.3611	-0.0014574	-3.9756	-0.0013286	334.17957509684516	14.655	0.16091	14.655	14.553	14.714	0					7	3	3	0	0	0	0.69544	1	3859	3859		22.58	0.018069	1	466190	+		7367	18971	3963	3990	7525	7525					0.021210357294194182
DGRVVRAREG	10	Unmodified	_DGRVVRAREG_					0	0	0			REV__ENST00000472106.2_1_8:102504814-102555784:+|nuORF	REV__ENST00000472106.2_1_8:102504814-102555784:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.206298828125	3	372.207377	1113.6003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.75	1	14.75	14.25	15.25	0								0	0	0	0.40634	1	3187	3187		28.577	1.8838	1		+		7368	19490	3964	3991	7526	7526					0.04804682683561623
DGSEPGESSS	10	Unmodified	_DGSEPGESSS_					0	0	0		ENSG00000171044|ENST00000416569|XKR6	ENSG00000171044|ENST00000416569|XKR6	ENSG00000171044|ENST00000416569|XKR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.1792907714844	2	476.180526	950.346499	-0.41094	-0.00019568	-3.8206	-0.0018193	-4.2316	-0.002015	476.179575696151	49.598	0.56318	49.598	49.374	49.937	0					45	20	3	0	0	0	0.73697	1	18622	18622		15.642	1.8665	1	263850			7369	6274	3965	3992	7527	7527					-0.13066053997067684
DGSFEPLR	8	Unmodified	_DGSFEPLR_					0	0	0		ENST00000378164.6_1_8:120845017-120845065:-|nuORF	ENST00000378164.6_1_8:120845017-120845065:-|nuORF	ENST00000378164.6_1_8:120845017-120845065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.7279357910156	2	460.727249	919.439946	-0.87318	-0.0004023	0.37005	0.00017049	-0.50312	-0.0002318	460.72764151653325	30.58	0.37353	30.58	30.346	30.719	0					21	13	2	0	0	0	0.54629	1	10024	10024		55.504	4.1688	1	68779			7370	9063	3966	3993	7528	7528					-0.022996650333197977
DGSGRRGPQK	10	Unmodified	_DGSGRRGPQK_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.18670654296875	3	353.188094	1056.54245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.746	1	13.746	13.246	14.246	0								0	0	0	0.36846	1	3264	3264		40.058	14.484	1				7371	960	3967	3994	7529	7529					0.016444207581344017
DGSIHGNVI	9	Unmodified	_DGSIHGNVI_					0	0	0			REV__ENSG00000183117|ENST00000635120|CSMD1	REV__ENSG00000183117|ENST00000635120|CSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.2323303222656	2	456.232699	910.450845	-2.635	-0.0012022	1.852	0.00084495	-0.78299	-0.00035722	456.23350115980827	19.101	0.27619	19.101	18.958	19.234	0					10	6	2	0	0	0	0.50461	1	5130	5130		31.955	0	1	104030	+		7372	16916	3968	3995	7530	7530					-0.007962626590369837
DGSIHYGSL	9	Unmodified	_DGSIHYGSL_					0	0	0		nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A;MYO9A|p.Y1422Ifs*8|1|0.18|ENSG00000066933|chr15:71898239-71898239|A/-|frameshift_variant;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.L1961*|2|0.14|ENSG00000066933|chr15:71878089-71878089|A/-|frameshift_variant	nc|ENSG00000066933|B2RTY4-2|MYO9A	nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7147521972656	2	474.724707	947.43486	0.6527	0.00030985	1.7321	0.00082226	2.3848	0.0011321	474.72568144224294	24.379	0.45561	24.379	24.188	24.643	0					21	10	3	0	0	0	0.2873	1	8189	8189		51.335	0	1	520450			7373	1398	3969	3996	7531	7531					-0.04095968895933311
DGSIVLSLAR	10	Unmodified	_DGSIVLSLAR_					0	0	0		ATP13A1|p.P794S|1|0.15|ENSG00000105726|chr19:19649896-19649896|G/A|missense_variant	ATP13A1|p.P794S|1|0.15|ENSG00000105726|chr19:19649896-19649896|G/A|missense_variant	ATP13A1|p.P794S|1|0.15|ENSG00000105726|chr19:19649896-19649896|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7985229492188	2	515.798206	1029.58186	1.2122	0.00062527	-1.6142	-0.00083262	-0.40199	-0.00020735	515.7975898703339	35.156	0.090279	35.156	35.074	35.164	0					4	2	2	0	0	0	0.59277	1	13156	13156		35.152	2.3396	1	55421			7374	253	3970	3997	7532	7532					0.06825127989009161
DGSLSAKRAG	10	Unmodified	_DGSLSAKRAG_					0	0	0		ENST00000532550.1_1_11:601671-606691:+|nuORF	ENST00000532550.1_1_11:601671-606691:+|nuORF	ENST00000532550.1_1_11:601671-606691:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.258544921875	2	481.256705	960.498858	2.3515	0.0011317	-0.40832	-0.00019651	1.9432	0.00093518	481.255913500442	22.012	0.5657	22.012	21.704	22.27	0					22	11	4	0	0	0	0.056886	1	7266	7266		107.01	0.5923	1	4583300			7375	10452	3971	3998	7533	7533					0.017028112609978052
DGSQIRGLRI	10	Unmodified	_DGSQIRGLRI_					0	0	0		ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8217163085938	2	557.820004	1113.62546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.856	1	15.856	15.356	16.356	0								0	0	0	0.4201	1	3695	3695		19.104	0	1				7376	9926	3972	3999	7534	7534					0.07318737486139071
DGSTLKVAL	9	Unmodified	_DGSTLKVAL_					0	0	0			REV__nc|ENSG00000129566|Q99973-2|TEP1	REV__nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2605285644531	2	452.260925	902.507297	-2.6156	-0.0011829	1.5396	0.0006963	-1.076	-0.00048663	452.26187818736054	30.14	0.24269	30.14	30.047	30.29	0					12	6	3	0	0	0	0.13519	1	10234	10234		71.296	2.5089	1	335710	+		7377	14551	3973	4000	7535	7535					0.052143651776077604
DGTARCVPCV	10	Unmodified	_DGTARCVPCV_					0	0	0			REV__NANOS2|p.G102R|1|0.19|ENSG00000188425|chr19:45914390-45914390|C/T|missense_variant	REV__NANOS2|p.G102R|1|0.19|ENSG00000188425|chr19:45914390-45914390|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.73345947265625	2	510.733694	1019.45284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.558	1	12.558	12.058	13.058	0								0	0	0	0.33107	1	2855	2855		45.972	1.5951	1		+		7378	20916	3974	4001	7536	7536					-0.05611293237097925
DGTLRVLSL	9	Unmodified	_DGTLRVLSL_					0	0	0			REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	325.1939697265625	3	325.194075	972.560395	-1.9066	-0.00062003	1.9362	0.00062965	0.029591	9.6229E-06	325.19458940271005	21.971	0.2696	21.971	21.888	22.157	0					12	6	3	0	0	0	0.5654	1	6460	6460		32.812	0	1	152980	+		7379	14488	3975	4002	7537	7537					0.07301742960294177
DGTQKVQNNI	10	Unmodified	_DGTQKVQNNI_					0	0	0		ENSG00000157315|ENST00000288025|TMED6	ENSG00000157315|ENST00000288025|TMED6	ENSG00000157315|ENST00000288025|TMED6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7467041015625	2	558.785827	1115.5571	3.4687	0.0019382	-2.4668	-0.0013784	1.0019	0.00055985	558.7846685561337	12.173	0.19153	12.173	12.077	12.269	0					8	5	2	0	0	0	0.55603	1	2519	2519		39.253	3.6345	1	141400			7380	5209	3976	4003	7538	7538					0.003944481156167967
DGVAGRQVRE	10	Unmodified	_DGVAGRQVRE_					0	0	0			REV__HDGF|p.G51Rfs*63|1|0.37|ENSG00000143321|chr1:156745311-156745312|-/A|frameshift_variant	REV__HDGF|p.G51Rfs*63|1|0.37|ENSG00000143321|chr1:156745311-156745312|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7870483398438	2	543.786161	1085.55777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.446	1	11.446	10.946	11.946	0								0	0	0	0.4201	1	2208	2208		5.2201	0	1		+		7381	20721	3977	4004	7539	7539					0.018412875553167396
DGVGARYVI	9	Unmodified	_DGVGARYVI_					0	0	0			REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant	REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2579650878906	2	475.258717	948.50288	-1.5667	-0.00074457	0.42827	0.00020354	-1.1384	-0.00054103	475.25898181155526	33.872	0.34571	33.872	33.721	34.067	0					19	13	2	0	0	0	0.4966	1	11376	11376		32.812	6.1195	1	99026	+		7382	21378	3978	4005	7540	7540					0.026569007547209367
DGVKKRKSS	9	Unmodified	_DGVKKRKSS_					0	0	0		nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;ENSG00000070808|ENST00000671881|CAMK2A	nc|ENSG00000145349|Q13557-9|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	335.8668212890625	3	335.533091	1003.57744	-0.041913	-1.4063E-05	-0.95668	-0.000321	-0.9986	-0.00033506	335.53286234501167	21.881	0.15059	21.881	21.806	21.957	0					5	3	2	0	0	0	0.61124	1	6447	6447		17.468	2.6031	1	45767			7383	11568	3979	4006	7541	7541					0.07579663566104955
DGVSVLVG	8	Unmodified	_DGVSVLVG_					0	0	0		ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2096252441406	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.294	1	53.294	52.794	53.794	0								0	0	0	1.7419	1	20552	20552		20.482	0	1				7384	5416	3980	4007	7542	7542					0.019344490520211366
DGVVKRAVAS	10	Unmodified	_DGVVKRAVAS_					0	0	0		ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2905578613281	2	501.290548	1000.56654	1.1197	0.00056129	-0.68072	-0.00034124	0.43898	0.00022006	501.2901255900728	49.309	1.2755	49.309	49.113	50.389	0					158	63	3	0	0	0	0.63019	1	19584	19584		19.104	6.2918	1	643040			7385	5235	3981	4008	7543	7543					0.06628261191804086
DGVVVTINK	9	Unmodified	_DGVVVTINK_					0	0	0		nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7742614746094	2	472.7742	943.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.223	1	33.223	32.723	33.723	0								0	0	0	0.2591	1	12701	12701		42.396	0	1				7386	1286	3982	4009	7544	7544					0.05982054068965681
DGWFSFIN	8	Unmodified	_DGWFSFIN_					0	0	0			REV__nc|ENSG00000055118|Q12809-2|KCNH2	REV__nc|ENSG00000055118|Q12809-2|KCNH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7444763183594	2	493.224342	984.434132	-1.2675	-0.00062518	0.19199	9.4695E-05	-1.0755	-0.00053048	493.22431887142966	24.255	0.23126	24.255	24.182	24.413	0					13	7	3	0	0	0	0.76283	1	7465	7465		25.45	2.4077	1	195440	+		7387	13052	3983	4010	7545	7545					-0.05870763544987767
DHAGLSAMLF	10	Unmodified	_DHAGLSAMLF_					0	0	0			REV__ENSG00000075234|ENST00000381031|TTC38	REV__ENSG00000075234|ENST00000381031|TTC38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2581176757812	2	531.257859	1060.50117	0.28776	0.00015287	0.36745	0.00019521	0.65521	0.00034809	531.258022794348	46.491	0.16698	46.491	46.411	46.578	0					17	9	2	0	0	0	0.52707	1	17867	17867		42.396	3.59	1	122940	+		7388	13226	3984	4011	7546	7546					-0.026664763255666912
DHELDASKQK	10	Unmodified	_DHELDASKQK_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.29443359375	2	585.791109	1169.56767	1.4105	0.00082628	2.5793	0.0015109	3.9898	0.0023372	586.2937722814221	40.47	0.13533	40.47	40.391	40.526	0					10	5	2	0	0	0	0.59277	1	15954	15954		35.152	3.6222	1	93879	+		7389	13212	3985	4012	7547	7547					-0.010335692299577204
DHGARDYFE	9	Unmodified	_DHGARDYFE_					0	0	0			REV__ENSG00000110881|ENST00000447966|ASIC1	REV__ENSG00000110881|ENST00000447966|ASIC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.2374877929688	2	555.23597	1108.45739	1.8223	0.0010118	-0.012819	-7.1177E-06	1.8094	0.0010047	555.2364913897356	49.84	0.25363	49.84	49.758	50.011	0					32	10	5	0	0	0	0.61124	1	19683	19683		19.104	0	1	522650	+		7390	13950	3986	4013	7548	7548					-0.0925036949834066
DHGLYQML	8	Unmodified	_DHGLYQML_					0	0	0		ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant;nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.732421875	2	488.731477	975.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.082	1	29.082	28.582	29.582	0								0	0	0	1.7419	1	9738	9738		42.474	0.078325	1				7391	65	3987	4014	7549	7549					-0.040304343883462934
DHGPGPGE	8	Unmodified	_DHGPGPGE_					0	0	0			REV__GTPBP3|p.P388H|1|0.43|ENSG00000130299|chr19:17341232-17341232|C/A|missense_variant	REV__GTPBP3|p.P388H|1|0.43|ENSG00000130299|chr19:17341232-17341232|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.1618957519531	2	383.161742	764.308932	0.44998	0.00017241	-0.60915	-0.0002334	-0.15918	-6.0991E-05	383.1616612787246	14.576	0.15482	14.576	14.525	14.68	0					8	3	3	0	0	0	0.75243	1	3818	3818		26.796	5.0938	1	353900	+		7392	20713	3988	4015	7550	7550					-0.08265055681374633
DHIYVSDK	8	Unmodified	_DHIYVSDK_					0	0	0			REV__ENSG00000089022|ENST00000550735|MAPKAPK5	REV__ENSG00000089022|ENST00000550735|MAPKAPK5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7398681640625	2	488.740357	975.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.571	1	29.571	29.071	30.071	0								0	0	0	1.7419	1	10849	10849		53.351	7.3995	1		+		7393	13401	3989	4016	7551	7551					-0.022553958618573233
DHMASSRNN	9	Unmodified	_DHMASSRNN_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.219482421875	2	516.219797	1030.42504	0.86008	0.00044399	-1.4227	-0.00073444	-0.56265	-0.00029045	516.2186875064286	30.017	0.15998	30.017	29.916	30.076	0					5	3	2	0	0	0	0.41113	1	11167	11167		40.778	5.5774	1	90181			7394	1354	3990	4017	7552	7552					-0.08895480172986936
DHNELEEF	8	Unmodified	_DHNELEEF_					0	0	0			REV__RP1|p.L1493Vfs*4|1|0.09|ENSG00000104237|chr8:54628358-54628359|-/GTCCGTGG|frameshift_variant	REV__RP1|p.L1493Vfs*4|1|0.09|ENSG00000104237|chr8:54628358-54628359|-/GTCCGTGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.71728515625	2	516.717079	1031.4196	0.91009	0.00047026	-0.70483	-0.0003642	0.20525	0.00010606	516.7167314259373	23.688	0.56668	23.688	23.462	24.029	0					19	11	2	0	0	0	0.70055	1	8152	8152		33.516	3.0119	1	155340	+		7395	13716	3991	4018	7553	7553					-0.09484880483796587
DHSAIPVINWA	11	Unmodified	_DHSAIPVINWA_					0	0	0		ANPEP|p.R658W|1|0.14|ENSG00000166825|chr15:89799297-89799297|G/A|missense_variant	ANPEP|p.R658W|1|0.14|ENSG00000166825|chr15:89799297-89799297|G/A|missense_variant	ANPEP|p.R658W|1|0.14|ENSG00000166825|chr15:89799297-89799297|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.8150634765625	2	611.814387	1221.61422	-0.80378	-0.00049177	0.69905	0.00042769	-0.10474	-6.4079E-05	611.8150105248257	30.605	0.31241	30.605	30.475	30.788	0					16	7	3	0	0	0	0.23884	1	11063	11063		69.628	26.763	1	488930			7396	168	3992	4019	7554	7554					0.012279153919962482
DHSAIPVINWA	11	Unmodified	_DHSAIPVINWA_					0	0	0		ANPEP|p.R658W|1|0.14|ENSG00000166825|chr15:89799297-89799297|G/A|missense_variant	ANPEP|p.R658W|1|0.14|ENSG00000166825|chr15:89799297-89799297|G/A|missense_variant	ANPEP|p.R658W|1|0.14|ENSG00000166825|chr15:89799297-89799297|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.8145141601562	2	611.814387	1221.61422	0.43634	0.00026696	0.032109	1.9645E-05	0.46845	0.0002866	611.8141080534698	30.587	0.29043	30.587	30.479	30.77	0					15	6	3	0	0	0	0.49805	1	11440	11440		44.377	14.059	1	320560			7397	168	3992	4019	7555	7555					0.012279153919962482
DHTLISVY	8	Unmodified	_DHTLISVY_					0	0	0			REV__nc|ENSG00000290649|Q8NH63|OR51H1	REV__nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2454528808594	2	474.245275	946.475997	0.67395	0.00031962	-0.26073	-0.00012365	0.41322	0.00019597	474.2451542057416	26.407	0.14186	26.407	26.34	26.481	0					8	3	3	0	0	0	0.59411	1	9104	9104		50.025	5.4935	1	119300	+		7398	21256	3993	4020	7556	7556					0.0006179214352641793
DHTLQAYAF	9	Unmodified	_DHTLQAYAF_					0	0	0			REV__ENST00000522774.1_1_8:37720415-37728147:-|nuORF	REV__ENST00000522774.1_1_8:37720415-37728147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7543334960938	2	533.253631	1064.49271	0.28974	0.00015451	-0.99389	-0.00053	-0.70415	-0.00037549	533.7542306594651	42.083	0.19162	42.083	41.996	42.188	0					21	9	3	0	0	0	0.22377	1	16526	16526		58.782	4.0056	1	111490	+		7399	15638	3994	4021	7557	7557					-0.03695706970552237
DHTVQNIQTM	10	Oxidation (M)	_DHTVQNIQTM(Oxidation (M))_		DHTVQNIQTM(1)		DHTVQNIQTM(93)	0	0	1			REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.7779541015625	2	601.777145	1201.53974	2.0902	0.0012578	-1.2884	-0.0007753	0.80187	0.00048255	601.7764175362594	37.307	0.55072	37.307	37.203	37.754	0					22	11	3	0	0	0	0.11308	1	14584	14584		93.143	12.689	1	529230	+		7400	14400	3995	4022	7558	7558		547			-0.05297215481709827
DHVGYAKVK	9	Unmodified	_DHVGYAKVK_					0	0	0		CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant;nc|ENSG00000107736|Q9H251-6|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-5|CDH23	CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5222473144531	3	339.522303	1015.54508	0.51208	0.00017386	-0.68971	-0.00023417	-0.17763	-6.031E-05	339.5220243289886	12.499	0.47721	12.499	12.32	12.797	0					30	15	3	0	0	0	0.50461	1	2646	2646		39.253	5.0803	1	666800			7401	452	3996	4023	7559	7559					0.03792876163083747
DHVTQEGLDE	10	Unmodified	_DHVTQEGLDE_					0	0	0		ENSG00000107731|ENST00000335350|UNC5B;nc|ENSG00000107731|Q8IZJ1-2|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.5037841796875	3	381.503525	1141.48875	0.43493	0.00016593	-0.56922	-0.00021716	-0.13429	-5.1233E-05	381.5035982838203	29.708	0.54893	29.708	29.599	30.148	0					29	11	5	0	0	0	0.50881	1	11020	11020		41.08	2.3265	1	3834600			7402	2492	3997	4024	7560	7560					-0.07633841254892104
DIAELWAVF	9	Unmodified	_DIAELWAVF_					0	0	0		LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant;nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1;ENST00000476315.1_1_22:33959226-33960957:-|nuORF	LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2747802734375	2	532.276575	1062.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.462	1	31.462	30.962	31.962	0								0	0	0	0.25856	1	10428	10428		42.474	8.3019	1				7403	3855	3998	4025	7561	7561					0.00982938211700457
DIATLDPKK	9	Unmodified	_DIATLDPKK_					0	0	0			REV__ANKRD62|p.L785Cfs*20|1|0.67|ENSG00000181626|chr18:12126174-12126174|T/-|frameshift_variant	REV__ANKRD62|p.L785Cfs*20|1|0.67|ENSG00000181626|chr18:12126174-12126174|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7879333496094	2	500.787307	999.560061	-0.4593	-0.00023001	0.94235	0.00047192	0.48305	0.0002419	500.78802675125223	25.23	0.18364	25.23	25.098	25.282	0					9	4	3	0	0	0	0.48389	1	8000	8000		34.173	0	1	94497	+		7404	12163	3999	4026	7562	7562					0.060263232404167866
DIEREWHAWDW	11	Unmodified	_DIEREWHAWDW_					0	0	0			REV__NAGLU|p.R149H|1|0.42|ENSG00000108784|chr17:42537460-42537460|G/A|missense_variant	REV__NAGLU|p.R149H|1|0.42|ENSG00000108784|chr17:42537460-42537460|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.8975219726562	3	514.896869	1541.66878	0.13903	7.1584E-05	0.95087	0.0004896	1.0899	0.00056119	514.8974503019803	20.552	0.16545	20.552	20.443	20.609	0					7	3	3	0	0	0	0.81227	1	6561	6561		12.433	3.221	1	518800	+		7405	20915	4000	4027	7563	7563					-0.0803911752723252
DIESKVQTL	9	Unmodified	_DIESKVQTL_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.783447265625	2	516.782222	1031.54989	0.31968	0.0001652	1.1875	0.00061366	1.5071	0.00077886	516.7828006085593	31.313	0.12869	31.313	31.27	31.399	0					8	5	2	0	0	0	0.19605	1	10059	10059		62.107	10.915	1	56719	+		7406	13891	4001	4028	7564	7564					0.035377155151991246
DIFKLAEAL	9	Unmodified	_DIFKLAEAL_					0	0	0			REV__ENST00000376964.3_1_X:47516580-47516661:-|nuORF	REV__ENST00000376964.3_1_X:47516580-47516661:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.292724609375	2	510.292225	1018.5699	1.0534	0.00053752	-1.1829	-0.00060365	-0.12959	-6.6128E-05	510.2913443730989	33.407	0.45069	33.407	33.313	33.763	0					22	16	2	0	0	0	0.42902	1	10866	10866		39.253	1.4413	1	235510	+		7407	14474	4002	4029	7565	7565					0.06135511245793168
DIFQASSR	8	Unmodified	_DIFQASSR_					0	0	0		ENST00000480488.2_1_20:18393725-18393827:-|nuORF	ENST00000480488.2_1_20:18393725-18393827:-|nuORF	ENST00000480488.2_1_20:18393725-18393827:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.23236083984375	2	462.232699	922.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.805	1	18.805	18.305	19.305	0								0	0	0	1.7419	1	5567	5567		27.882	1.0861	1				7408	9951	4003	4030	7566	7566					-0.013482626590416658
DIFTIREE	8	Unmodified	_DIFTIREE_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7656555175781	2	511.761289	1021.50803	1.239	0.00063409	2.9252	0.001497	4.1642	0.0021311	511.7631891122926	31.099	0.36616	31.099	30.982	31.348	0					26	8	4	0	0	0	0.3961	1	11679	11679		71.296	5.4925	1	974010			7409	1720	4004	4031	7567	7567					-0.0018684017333043812
DIHGTYKDLL	10	Unmodified	_DIHGTYKDLL_					0	0	0		CON__Q95121	CON__Q95121	CON__Q95121	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.8087158203125	2	587.808771	1173.60299	0.53623	0.0003152	-0.36201	-0.00021279	0.17422	0.00010241	587.8084332684307	27.748	0.18081	27.748	27.658	27.838	0					7	4	2	0	0	0	0.34667	1	9129	9129		62.107	2.1766	1	221990		+	7410	667	4005	4032	7568	7568					0.023130932978574492
DIHKTNLCD	9	Unmodified	_DIHKTNLCD_					0	0	0		SLC26A2|p.N296D|1|0.43|ENSG00000155850|chr5:149980479-149980479|A/G|missense_variant	SLC26A2|p.N296D|1|0.43|ENSG00000155850|chr5:149980479-149980479|A/G|missense_variant	SLC26A2|p.N296D|1|0.43|ENSG00000155850|chr5:149980479-149980479|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7514038085938	2	529.750398	1057.48624	1.8471	0.00097848	0.11757	6.2281E-05	1.9646	0.0010408	529.7504207914931	20.375	0.22933	20.375	20.279	20.508	0					8	5	2	0	0	0	0.53083	1	5744	5744		29.15	0	1	110720			7411	22407	4006	4033	7569	7569					-0.04019968193551904
DIIIEEIFS	9	Unmodified	_DIIIEEIFS_					0	0	0			REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.785888671875	2	539.786973	1077.55939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.481	1	20.481	19.981	20.981	0								0	0	0	0.24544	1	6644	6644		45.952	10.8	1		+		7412	12367	4007	4034	7570	7570					0.023714838007208527
DIIMSKVVG	9	Unmodified	_DIIMSKVVG_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7728576660156	2	481.272978	960.531403	-2.923	-0.0014068	-0.56098	-0.00026999	-3.484	-0.0016768	481.2726320878341	38.782	0.23936	38.782	38.687	38.926	0					23	12	2	0	0	0	0.53083	1	13845	13845		29.15	3.6994	1	148090	+		7413	16727	4008	4035	7571	7571					0.049558823396409935
DIIPEHHQKK	10	Unmodified	_DIIPEHHQKK_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74084367-74085867:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	622.8419189453125	2	622.840936	1243.66732	0.49269	0.00030687	1.0831	0.00067457	1.5757	0.00098144	622.8416088970982	27.452	0.67821	27.452	27.114	27.792	0					27	16	3	0	0	0	0.38179	1	9602	9602		54.776	5.2403	1	217060			7414	6897	4009	4036	7572	7572					0.055232931746331815
DIKKRLSNI	9	Unmodified	_DIKKRLSNI_					0	0	0			REV__tr|U7SRH7|U7SRH7_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorArlROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01664PE=4SV=1	REV__tr|U7SRH7|U7SRH7_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorArlROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01664PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.8927307128906	3	362.892507	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.047	1	18.047	17.547	18.547	0								0	0	0	0.38404	1	4631	4631		11.636	1.9898	1		+		7415	21853	4010	4037	7573	7573					0.11629096151318663
DIKLPLKVL	9	Unmodified	_DIKLPLKVL_					0	0	0			REV__ENSG00000104047|ENST00000403028|DTWD1	REV__ENSG00000104047|ENST00000403028|DTWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.8492431640625	2	519.84971	1037.68487	1.4138	0.00073496	-1.0698	-0.00055615	0.34396	0.00017881	519.8491130915951	36.321	0.21941	36.321	36.211	36.43	0					13	6	3	0	0	0	0.12278	1	13671	13671		58.23	16.803	1	188040	+		7416	13705	4011	4038	7574	7574					0.16753240447633289
DIKLPLKVL	9	Unmodified	_DIKLPLKVL_					0	0	0			REV__ENSG00000104047|ENST00000403028|DTWD1	REV__ENSG00000104047|ENST00000403028|DTWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.9024658203125	3	346.902232	1037.68487	0.50151	0.00017398	-1.3337	-0.00046266	-0.83216	-0.00028868	346.9018938204324	36.341	0.25904	36.341	36.199	36.458	0					10	7	2	0	0	0	0.04067	1	13676	13676		98.582	20.318	1	625180	+		7417	13705	4011	4038	7575	7575					0.16753240447633289
DIKPSNIVF	9	Unmodified	_DIKPSNIVF_					0	0	0		MAP3K8|p.H251N|1|0.31|ENSG00000107968|chr10:30450504-30450504|C/A|missense_variant;nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	MAP3K8|p.H251N|1|0.31|ENSG00000107968|chr10:30450504-30450504|C/A|missense_variant	MAP3K8|p.H251N|1|0.31|ENSG00000107968|chr10:30450504-30450504|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.788818359375	2	516.78985	1031.56515	-0.0096024	-4.9624E-06	-2.7098	-0.0014004	-2.7194	-0.0014054	516.7883085528632	31.278	0.27304	31.278	31.159	31.432	0					19	10	2	0	0	0	0.22377	1	10337	10337		58.782	4.0056	1	158850			7418	2509	4012	4039	7576	7576					0.05062627103052364
DIKQDRRG	8	Unmodified	_DIKQDRRG_					0	0	0			REV__ENST00000563229.5_1_15:74281313-74286901:-|nuORF	REV__ENST00000563229.5_1_15:74281313-74286901:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.271240234375	2	494.270147	986.525741	-0.049347	-2.4391E-05	1.9558	0.00096671	1.9065	0.00094232	494.27106977664795	30.624	0.1915	30.624	30.539	30.73	0					18	8	3	0	0	0	0.78142	1	9764	9764		23.042	3.0457	1	131210	+		7419	20317	4013	4040	7577	7577					0.031939198721943285
DIKSRRMVTR	10	Unmodified	_DIKSRRMVTR_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|14|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|14|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|14|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.3609619140625	2	631.361513	1260.70847	-0.73071	-0.00046134	1.0866	0.00068604	0.3559	0.0002247	631.3620181368917	16.275	0.77142	16.275	16.13	16.901	0					47	28	3	0	0	0	0.66185	1	4018	4018		26.693	2.1737	1	211540			7420	11270	4014	4041	7578	7578					0.08854730942471178
DIKTTTTM	8	Unmodified	_DIKTTTTM_					0	0	0		ENST00000550106.5_1_12:95612049-95636028:+|nuORF	ENST00000550106.5_1_12:95612049-95636028:+|nuORF	ENST00000550106.5_1_12:95612049-95636028:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.7313537597656	2	455.731143	909.447733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.87	1	33.87	33.37	34.37	0								0	0	0	1.7419	1	13002	13002		33.516	3.0119	1				7421	10612	4015	4042	7579	7579					-0.010612738280656231
DILFAFTA	8	Unmodified	_DILFAFTA_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.23876953125	2	449.239461	896.46437	-0.093475	-4.1993E-05	-2.7762	-0.0012472	-2.8696	-0.0012891	449.23827233581886	29.172	0.51399	29.172	28.976	29.49	0					29	11	4	0	0	0	0.61938	1	10804	10804		45.952	5.1738	1	1319000			7422	6083	4016	4043	7580	7580					0.011995951201811295
DILFAFTA	8	Unmodified	_DILFAFTA_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2393493652344	2	449.239461	896.46437	0.55384	0.00024881	-1.7738	-0.00079685	-1.2199	-0.00054805	449.2387673508117	28.989	0.25307	28.989	28.85	29.103	0					9	6	2	0	0	0	0.54629	1	9685	9685		55.504	5.4797	1	183680			7423	6083	4016	4043	7581	7581					0.011995951201811295
DILGNPAPT	9	Unmodified	_DILGNPAPT_					0	0	0			REV__tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	REV__tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2373352050781	2	449.23745	896.460347	3.6009	0.0016177	-1.8285	-0.00082145	1.7724	0.00079623	449.2367559381457	28.97	0.29478	28.97	28.83	29.125	0					19	11	2	0	0	0	0.27249	1	9421	9421		52.937	3.4952	1	126840	+		7424	22198	4017	4044	7582	7582					0.007975056264740488
DILHYSGH	8	Unmodified	_DILHYSGH_					0	0	0		nc|ENSG00000188167|Q6ZT21-2|TMPPE;ENSG00000188167|ENST00000342462|TMPPE	nc|ENSG00000188167|Q6ZT21-2|TMPPE	nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.22979736328125	2	471.227417	940.44028	-1.3517	-0.00063695	3.8434	0.0018111	2.4917	0.0011742	471.22959530613554	27.26	0.20294	27.26	27.131	27.334	0					11	7	2	0	0	0	0.65276	1	8659	8659		40.573	3.5441	1	50756			7425	7241	4018	4045	7583	7583					-0.03232245313472504
DILKRQFK	8	Unmodified	_DILKRQFK_					0	0	0			REV__ENSG00000173276|ENST00000310826|ZBTB21	REV__ENSG00000173276|ENST00000310826|ZBTB21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.3196411132812	2	524.319109	1046.62366	1.8107	0.00094937	-1.1384	-0.00059689	0.67226	0.00035248	524.3185394149914	35.04	0.36298	35.04	34.954	35.317	0					18	9	3	0	0	0	0.51384	1	13101	13101		38.806	0	1	336840	+		7426	16504	4019	4046	7584	7584					0.10221728468172842
DILRLTSQN	9	Unmodified	_DILRLTSQN_					0	0	0		ZNF280B|p.S266R|1|0.14|ENSG00000275004|chr22:22488601-22488601|A/C|missense_variant	ZNF280B|p.S266R|1|0.14|ENSG00000275004|chr22:22488601-22488601|A/C|missense_variant	ZNF280B|p.S266R|1|0.14|ENSG00000275004|chr22:22488601-22488601|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.8644714355469	3	353.864617	1058.57202	-0.85836	-0.00030374	0.2786	9.8585E-05	-0.57977	-0.00020516	353.8647368577139	18.656	0.12486	18.656	18.588	18.713	0					8	4	2	0	0	0	0.61124	1	4918	4918		13.454	0	1	160600			7427	23148	4020	4047	7585	7585					0.04507939983614051
DIMLVTSLNL	10	Unmodified	_DIMLVTSLNL_					0	0	0		tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.5440673828125	3	373.542375	1117.6053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.787	1	49.787	49.287	50.287	0								0	0	0	0.4201	1	18723	18723		14.694	0	1				7428	22642	4021	4048	7586	7586					0.051198057112969764
DINMGVAV	8	Unmodified	_DINMGVAV_					0	0	0			REV__nc|ENSG00000145864|P47870-1|GABRB2	REV__nc|ENSG00000145864|P47870-1|GABRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.7074890136719	2	409.707471	817.400389	-1.4166	-0.0005804	1.267	0.0005191	-0.14963	-6.1304E-05	409.7080871410783	22.933	0.30006	22.933	22.771	23.071	0					16	10	2	0	0	0	0.6282	1	6807	6807		44.531	2.0566	1	119270	+		7429	15293	4022	4049	7587	7587					-0.01561508308395787
DIPTDGILK	9	Unmodified	_DIPTDGILK_					0	0	0			REV__nc|ENSG00000186350|P19793-2|RXRA	REV__nc|ENSG00000186350|P19793-2|RXRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2735290527344	2	486.274032	970.533512	-2.9132	-0.0014166	1.2407	0.00060333	-1.6724	-0.00081327	486.27464451058773	33.856	0.45874	33.856	33.702	34.161	0					19	13	2	0	0	0	0.16002	2	11980	11932;11980		66.429	7.6473	1	60037	+		7430	15170	4023	4050	7588;7589	7589					0.04706634349099659
DIQGIEPGTFK	11	Unmodified	_DIQGIEPGTFK_					0	0	0		LRRTM4|p.K469Rfs*9|1|0.19|ENSG00000176204|chr2:77518463-77518463|T/-|frameshift_variant;nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4	LRRTM4|p.K469Rfs*9|1|0.19|ENSG00000176204|chr2:77518463-77518463|T/-|frameshift_variant	LRRTM4|p.K469Rfs*9|1|0.19|ENSG00000176204|chr2:77518463-77518463|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.21197509765625	3	402.211794	1203.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.913	1	39.913	39.413	40.413	0								0	0	0	0.44222	1	15208	15208		27.644	0.59661	1				7431	6596	4024	4051	7590	7590					0.01989075952269559
DIQLTQVAL	9	Unmodified	_DIQLTQVAL_					0	0	0			REV__ENSG00000131697|ENST00000378156|NPHP4	REV__ENSG00000131697|ENST00000378156|NPHP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7875671386719	2	500.787307	999.560061	-0.13885	-6.9536E-05	0.41645	0.00020855	0.27759	0.00013902	500.78751546664677	36.169	0.16244	36.169	36.084	36.247	0					7	4	2	0	0	0	0.34452	1	13626	13626		46.457	10.01	1	205980	+		7432	14630	4025	4052	7591	7591					0.060263232404167866
DIRTLVAL	8	Unmodified	_DIRTLVAL_					0	0	0		tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1	tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1	tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7792053222656	2	450.779285	899.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.768	1	43.768	43.268	44.268	0								0	0	0	1.7419	1	17094	17094		44.117	1.7207	1				7433	22926	4026	4053	7592	7592					0.09022661794188025
DISDKGVIL	9	Unmodified	_DISDKGVIL_					0	0	0			REV__ENST00000441488.6_1_11:67925157-67938746:-|nuORF	REV__ENST00000441488.6_1_11:67925157-67938746:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2732849121094	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.812	1	38.812	38.312	39.312	0								0	0	0	0.1633	1	14758	14758		56.721	1.9447	1		+		7434	13924	4027	4054	7593	7593					0.052586343491157095
DISGLQRAV	9	Unmodified	_DISGLQRAV_					0	0	0		ENST00000539367.5_1_11:72287653-72353469:-|nuORF;PDE2A|p.P98Hfs*53|1|0.29|ENSG00000186642|chr11:72605168-72605168|G/-|frameshift_variant;nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-6|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7695617675781	2	479.769448	957.524344	-1.4014	-0.00067236	2.1599	0.0010363	0.75848	0.0003639	479.77013794466694	29.333	0.13107	29.333	29.28	29.411	0					11	5	3	0	0	0	0.39215	1	9544	9544		42.396	6.7778	1	103060			7435	10522	4028	4055	7594	7594					0.04388285783431911
DISVATKLL	9	Unmodified	_DISVATKLL_					0	0	0		ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;ANKRD26|p.N447Kfs*5|1|0.23|ENSG00000107890|chr10:27064010-27064011|-/T|frameshift_variant	ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2919921875	2	480.292225	958.569897	0.93106	0.00044718	-0.83547	-0.00040127	0.095582	4.5907E-05	480.2917045964233	37.895	0.48892	37.895	37.55	38.039	0					23	10	3	0	0	0	0.12834	1	14864	14864		72.879	1.5835	1	1935500			7436	156	4029	4056	7595	7595					0.08895511245816579
DITVYEMTD	9	Oxidation (M)	_DITVYEM(Oxidation (M))TD_		DITVYEM(1)TD		DITVYEM(63)TD	0	0	1		tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7340698242188	2	551.73408	1101.45361	0.59018	0.00032562	-2.2094	-0.001219	-1.6193	-0.0008934	552.2339728701611	36.281	0.1898	36.281	36.161	36.351	0					8	5	2	0	0	0	0.18605	1	13680	13680		63.306	8.53	1	275080			7437	22782	4030	4057	7596	7596		822			-0.09306220107077934
DIVLTHSLF	9	Unmodified	_DIVLTHSLF_					0	0	0		nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.8623962402344	3	348.862325	1043.56515	0.17714	6.1797E-05	-0.22899	-7.9886E-05	-0.051853	-1.8089E-05	348.862215320634	33.679	0.12756	33.679	33.652	33.779	0					8	5	2	0	0	0	0.57706	1	10977	10977		24.519	24.519	1	88878			7438	11475	4031	4058	7597	7597					0.04510627103036313
DIVNHATDI	9	Unmodified	_DIVNHATDI_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2508544921875	2	499.251089	996.487624	0.86428	0.00043149	-1.359	-0.00067847	-0.4947	-0.00024698	499.2505503053463	39.129	0.20761	39.129	39.05	39.257	0					16	7	4	0	0	0	0.33044	1	15374	15374		47.657	5.1829	1	220860	+		7439	15617	4032	4059	7598	7598					-0.01076010833151031
DIVTRVAE	8	Unmodified	_DIVTRVAE_					0	0	0		ENSG00000136816|ENST00000259339|TOR1B	ENSG00000136816|ENST00000259339|TOR1B	ENSG00000136816|ENST00000259339|TOR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7524719238281	2	451.750724	901.486896	0.87645	0.00039594	3.8711	0.0017488	4.7476	0.0021447	451.7526724312313	44.034	0.26772	44.034	43.953	44.221	0					13	11	2	0	0	0	0.3049	1	17649	17649		82.241	5.3939	1	86857			7440	4110	4033	4060	7599	7599					0.03221194517800541
DIVVHRLLM	9	Unmodified	_DIVVHRLLM_					0	0	0		nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L;ENST00000564945.1_1_15:66621377-66621779:+|nuORF	nc|ENSG00000166938|Q8TF46-2|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.882080078125	3	365.882955	1094.62703	1.2126	0.00044367	-2.2296	-0.00081576	-1.017	-0.00037208	365.88166932126677	19.322	0.265	19.322	19.214	19.479	0					12	5	3	0	0	0	0.5654	1	6103	6103		32.812	10.233	1	1095000			7441	5952	4034	4061	7600	7600					0.08350655250546879
DIWVIVLI	8	Unmodified	_DIWVIVLI_					0	0	0		ENSG00000256235|ENST00000526627|SMIM3	ENSG00000256235|ENST00000526627|SMIM3	ENSG00000256235|ENST00000526627|SMIM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.8001708984375	2	485.802229	969.589904	-2.9142	-0.0014157	-0.94562	-0.00045939	-3.8598	-0.0018751	485.80168417072014	35.839	0.1907	35.839	35.74	35.931	0					13	7	2	0	0	0	0.74117	1	12804	12804		28.254	1.4582	1	78883			7442	8025	4035	4062	7601	7601					0.10389306976423995
DKADIFAFGL	10	Unmodified	_DKADIFAFGL_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7858276367188	2	548.787307	1095.56006	-1.5083	-0.00082773	-2.1793	-0.001196	-3.6876	-0.0020237	548.7859937939396	32.682	0.25304	32.682	32.597	32.85	0					10	7	2	0	0	0	0.61187	1	11414	11414		32.812	1.2826	1	111780			7443	6059	4036	4063	7602	7602					0.016103232404248047
DKAGALAVLL	10	Unmodified	_DKAGALAVLL_					0	0	0		PANX2|p.A39V|1|0.46|ENSG00000073150|chr22:50170846-50170846|C/T|missense_variant	PANX2|p.A39V|1|0.46|ENSG00000073150|chr22:50170846-50170846|C/T|missense_variant	PANX2|p.A39V|1|0.46|ENSG00000073150|chr22:50170846-50170846|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7999267578125	2	485.800217	969.585882	-0.26911	-0.00013073	-0.091213	-4.4311E-05	-0.36032	-0.00017505	485.8002826660464	36.131	0.35481	36.131	35.892	36.247	0					20	9	3	0	0	0	0.39566	1	13589	13589		56.721	1.9447	1	717170			7444	11895	4037	4064	7603	7603					0.09987217482705546
DKAQQLAAQ	9	Unmodified	_DKAQQLAAQ_					0	0	0			REV__ENSG00000186442|ENST00000417996|KRT3	REV__ENSG00000186442|ENST00000417996|KRT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7589416503906	2	486.759081	971.503609	0.0054934	2.674E-06	-0.38938	-0.00018953	-0.38388	-0.00018686	486.75892484739404	17.109	0.13901	17.109	17.033	17.172	0					9	4	3	0	0	0	0.4966	1	4034	4034		32.812	1.2826	1	123950	+	+	7445	12590	4038	4065	7604	7604					0.01671695403740614
DKARANLTI	9	Unmodified	_DKARANLTI_					0	0	0			REV__tr|U7SQR2|U7SQR2_FUSNUTetracenomycinpolyketidesynthesisO-methyltransferaseTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01759PE=4SV=1	REV__tr|U7SQR2|U7SQR2_FUSNUTetracenomycinpolyketidesynthesisO-methyltransferaseTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01759PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2932434082031	2	501.290548	1000.56654	0.14776	7.4071E-05	3.4335	0.0017212	3.5812	0.0017952	501.2918507758201	37.784	0.09127	37.784	37.737	37.828	0					6	4	2	0	0	0	0.49718	1	13518	13518		25.574	0	1	77128	+		7446	21839	4039	4066	7605	7605					0.06628261191792717
DKATGKISK	9	Unmodified	_DKATGKISK_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.279296875	2	474.279649	946.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.785	1	14.785	14.285	15.285	0								0	0	0	0.38404	1	3910	3910		15.642	0	1				7447	6946	4040	4067	7606	7606					0.06933456443221075
DKAVCVRR	8	Unmodified	_DKAVCVRR_					0	0	0		ENST00000568834.5_1_16:1833007-1837759:+|nuORF	ENST00000568834.5_1_16:1833007-1837759:+|nuORF	ENST00000568834.5_1_16:1833007-1837759:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	316.1803283691406	3	316.179883	945.517819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.984	1	46.984	46.484	47.484	0								0	0	0	1.7419	1	17291	17291		21.96	0	1				7448	10776	4041	4068	7607	7607					0.04288069351059676
DKAYAVCYVT	10	Unmodified	_DKAYAVCYVT_					0	0	0			REV__ENSG00000163913|ENST00000348417|IFT122	REV__ENSG00000163913|ENST00000348417|IFT122	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7692260742188	2	566.7708	1131.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.65	1	35.65	35.15	36.15	0								0	0	0	0.29806	1	13830	13830		51.193	1.6567	1		+		7449	15933	4042	4069	7608	7608					-0.03345626873965557
DKDLENILRK	10	Unmodified	_DKDLENILRK_					0	0	0		tr|U7SYT2|U7SYT2_FUSNURibosomalRNAsmallsubunitmethyltransferaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmAPE=3SV=1	tr|U7SYT2|U7SYT2_FUSNURibosomalRNAsmallsubunitmethyltransferaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmAPE=3SV=1	tr|U7SYT2|U7SYT2_FUSNURibosomalRNAsmallsubunitmethyltransferaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.2383728027344	3	415.238343	1242.6932	-0.36257	-0.00015055	-0.17801	-7.3915E-05	-0.54058	-0.00022447	415.2383420497752	30.537	1.5909	30.537	30.393	31.984	0					87	32	6	0	0	0	0.46989	1	11284	11284		48.602	4.9508	1	49759000			7450	22880	4043	4070	7609	7609					0.08156142626239671
DKDLNNYY	8	Unmodified	_DKDLNNYY_					0	0	0			REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7351684570312	2	522.735271	1043.45599	1.5247	0.000797	-0.30062	-0.00015715	1.224	0.00063985	522.7349603921386	32.125	0.2586	32.125	32.073	32.332	0					16	11	2	0	0	0	0.75243	1	10374	10374		26.796	0	1	61254	+		7451	21743	4044	4071	7610	7610					-0.064000035871004
DKDPKSDQL	9	Unmodified	_DKDPKSDQL_					0	0	0			REV__ENST00000378406.5_2_9:35660722-35661181:+|nuORF	REV__ENST00000378406.5_2_9:35660722-35661181:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2633666992188	2	523.261653	1044.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.607	1	45.607	45.107	46.107	0								0	0	0	0.31222	1	18270	18270		19.104	0	1		+		7452	15730	4045	4072	7611	7611					-0.011720455242993921
DKEFKYKK	8	Unmodified	_DKEFKYKK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.3016357421875	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.516	1	17.516	17.016	18.016	0								0	0	0	1.7419	1	4382	4382		39.253	4.1008	1		+		7453	15602;22247	4046	4073	7612	7612					0.05278315994382865
DKEGFVSKL	9	Unmodified	_DKEGFVSKL_					0	0	0			REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.77880859375	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.971	1	42.971	42.471	43.471	0								0	0	0	0.241	1	17177	17177		45.022	2.6261	1		+		7454	18948	4047	4074	7613	7613					0.034500367233818
DKEHIQFLYER	11	Unmodified	_DKEHIQFLYER_					0	0	0		MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2510681152344	3	493.252652	1476.73613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.973	1	30.973	30.473	31.473	0								0	0	0	0.42265	1	10222	10222		32.034	11.719	1				7455	6301	4048	4075	7614	7614					0.016829126837137665
DKEPAVITK	9	Unmodified	_DKEPAVITK_					0	0	0			REV__ENST00000493306.1_1_9:110249379-110249688:-|nuORF	REV__ENST00000493306.1_1_9:110249379-110249688:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.78692626953125	2	500.787307	999.560061	3.4621	0.0017338	-3.1088	-0.0015568	0.35334	0.00017695	500.7856372212948	25.159	0.20522	25.159	25.037	25.242	0					10	6	2	0	0	0	0.28504	1	7789	7789		51.528	5.5555	1	70600	+		7456	19738	4049	4076	7615	7615					0.06026323240405418
DKEPAVITK	9	Unmodified	_DKEPAVITK_					0	0	0			REV__ENST00000493306.1_1_9:110249379-110249688:-|nuORF	REV__ENST00000493306.1_1_9:110249379-110249688:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.78717041015625	2	500.787307	999.560061	0.019934	9.9829E-06	-0.32632	-0.00016342	-0.30639	-0.00015344	500.78723200262954	25.367	0.26301	25.367	25.256	25.519	0					12	5	3	0	0	0	0.054723	1	9003	9003		93.598	18.554	1	776360	+		7457	19738	4049	4076	7616	7616					0.06026323240405418
DKERQLRAR	9	Unmodified	_DKERQLRAR_					0	0	0		PNMT|p.H210Tfs*20|1|0.23|ENSG00000141744|chr17:39670162-39670162|G/-|frameshift_variant;PNMT|p.H210Afs*27|1|0.46|ENSG00000141744|chr17:39670161-39670162|-/G|frameshift_variant;ENSG00000141744|ENST00000269582|PNMT	PNMT|p.H210Tfs*20|1|0.23|ENSG00000141744|chr17:39670162-39670162|G/-|frameshift_variant	PNMT|p.H210Tfs*20|1|0.23|ENSG00000141744|chr17:39670162-39670162|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.22637939453125	3	391.226661	1170.65815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.296	1	42.296	41.796	42.796	0								0	0	0	0.35737	1	14796	14796		23.523	4.4192	1				7458	4469	4050	4077	7617	7617					0.07964944608988844
DKESLLYR	8	Unmodified	_DKESLLYR_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2763671875	2	512.277106	1022.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.012	1	43.012	42.512	43.512	0								0	0	0	1.7419	1	16853	16853		49.442	0	1		+		7459	13592	4051	4078	7618	7618					0.029291525806115715
DKEVAFCL	8	Unmodified	_DKEVAFCL_					0	0	0		ENSG00000117215|ENST00000375105|PLA2G2D	ENSG00000117215|ENST00000375105|PLA2G2D	ENSG00000117215|ENST00000375105|PLA2G2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7274475097656	2	462.728403	923.442254	-0.716	-0.00033132	-1.469	-0.00067973	-2.185	-0.001011	462.727619468425	13.493	0.40843	13.493	13.216	13.624	0					17	11	2	0	0	0	0.78431	1	3098	3098		10.185	0.71421	1	235340			7460	3026	4052	4079	7619	7619					-0.022529526198923122
DKFIADIDGR	10	Unmodified	_DKFIADIDGR_					0	0	0			REV__EIF4H|p.Q55R|1|0.2|ENSG00000106682|chr7:74187715-74187715|A/G|missense_variant	REV__EIF4H|p.Q55R|1|0.2|ENSG00000106682|chr7:74187715-74187715|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.3008422851562	2	575.29857	1148.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.848	1	41.848	41.348	42.348	0								0	0	0	0.39264	1	15887	15887		32.751	3.5805	1		+		7461	12787	4053	4080	7620	7620					0.014239226380368564
DKGAQTGAGL	10	Unmodified	_DKGAQTGAGL_					0	0	0		ENSG00000172927|ENST00000441339|MYEOV	ENSG00000172927|ENST00000441339|MYEOV	ENSG00000172927|ENST00000441339|MYEOV	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.237548828125	2	459.237981	916.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.784	1	25.784	25.284	26.284	0								0	0	0	0.37129	1	8065	8065		39.253	0.44669	1				7462	6395	4054	4081	7621	7621					-0.00016280004626878508
DKGFKYTY	8	Unmodified	_DKGFKYTY_					0	0	0		tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2532653808594	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.327	1	37.327	36.827	37.827	0								0	0	0	1.7419	1	14596	14596		37.159	1.5408	1				7463	22886	4055	4082	7622	7622					-0.017779213394419457
DKGSSSHNKPK	11	Unmodified	_DKGSSSHNKPK_					0	0	0		ENST00000563976.1_1_16:50810130-50811860:+|nuORF;CYLD|p.T340Nfs*11|1|0.11|ENSG00000083799|chr16:50776272-50776273|-/AAAT|frameshift_variant;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;CYLD|p.I702*|1|0.1|ENSG00000083799|chr16:50787844-50787844|A/-|frameshift_variant;CYLD|p.N722Mfs*13|3|0.37|ENSG00000083799|chr16:50791608-50791608|A/-|frameshift_variant;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD	ENST00000563976.1_1_16:50810130-50811860:+|nuORF	ENST00000563976.1_1_16:50810130-50811860:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.8047485351562	2	592.804551	1183.59455	0.12736	7.55E-05	-0.065656	-3.8921E-05	0.061704	3.6578E-05	592.8045044114593	14.052	0.080761	14.052	14.011	14.092	0					8	4	2	0	0	0	0.32407	1	2834	2834		59.931	12.015	1	103930			7464	726	4056	4083	7623	7623					0.010095393812207476
DKGSSSHNKPK	11	Unmodified	_DKGSSSHNKPK_					0	0	0		ENST00000563976.1_1_16:50810130-50811860:+|nuORF;CYLD|p.T340Nfs*11|1|0.11|ENSG00000083799|chr16:50776272-50776273|-/AAAT|frameshift_variant;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;CYLD|p.I702*|1|0.1|ENSG00000083799|chr16:50787844-50787844|A/-|frameshift_variant;CYLD|p.N722Mfs*13|3|0.37|ENSG00000083799|chr16:50791608-50791608|A/-|frameshift_variant;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD	ENST00000563976.1_1_16:50810130-50811860:+|nuORF	ENST00000563976.1_1_16:50810130-50811860:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.8048095703125	2	592.804551	1183.59455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.061	1	14.061	13.561	14.561	0								0	0	0	0.36657	1	2984	2984		42.864	0	1				7465	726	4056	4083	7624	7624					0.010095393812207476
DKGSSSHNKPK	11	Unmodified	_DKGSSSHNKPK_					0	0	0		ENST00000563976.1_1_16:50810130-50811860:+|nuORF;CYLD|p.T340Nfs*11|1|0.11|ENSG00000083799|chr16:50776272-50776273|-/AAAT|frameshift_variant;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;CYLD|p.I702*|1|0.1|ENSG00000083799|chr16:50787844-50787844|A/-|frameshift_variant;CYLD|p.N722Mfs*13|3|0.37|ENSG00000083799|chr16:50791608-50791608|A/-|frameshift_variant;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD	ENST00000563976.1_1_16:50810130-50811860:+|nuORF	ENST00000563976.1_1_16:50810130-50811860:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.8043212890625	2	592.804551	1183.59455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.347	1	14.347	13.847	14.847	0								0	0	0	0.19891	1	3701	3701		63.534	3.6031	1				7466	726	4056	4083	7625	7625					0.010095393812207476
DKIAEIIKED	10	Unmodified	_DKIAEIIKED_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.82275390625	2	587.321711	1172.62887	-0.36316	-0.00021329	0.46628	0.00027386	0.10312	6.0563E-05	587.3220304491455	31.061	0.45614	31.061	30.775	31.231	0					25	16	2	0	0	0	0.35046	1	10199	10199		61.691	5.2575	1	134340			7467	7312	4057	4084	7626	7626					0.04945942749486676
DKIFYLFLTQE	11	Unmodified	_DKIFYLFLTQE_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.92095947265625	3	472.918499	1415.73367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.44	1	33.44	32.94	33.94	0								0	0	0	0.45674	1	12365	12365		21.78	0.74819	1				7468	2854	4058	4085	7627	7627					0.04243064226011484
DKILDYTV	8	Unmodified	_DKILDYTV_					0	0	0			REV__ENSG00000175567|ENST00000663595|UCP2	REV__ENSG00000175567|ENST00000663595|UCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.760498046875	2	483.760758	965.506963	-0.1754	-8.4851E-05	-0.64562	-0.00031233	-0.82102	-0.00039718	483.7605698514489	35.111	0.4014	35.111	34.982	35.383	0					23	10	4	0	0	0	0.29286	1	13126	13126		84.916	5.2029	1	719500	+		7469	16622	4059	4086	7628	7628					0.022829454577504293
DKILDYTV	8	Unmodified	_DKILDYTV_					0	0	0			REV__ENSG00000175567|ENST00000663595|UCP2	REV__ENSG00000175567|ENST00000663595|UCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.760498046875	2	483.760758	965.506963	-0.61141	-0.00029578	-0.27638	-0.0001337	-0.88779	-0.00042948	483.7608141332524	35.096	0.26398	35.096	34.986	35.25	0					16	7	4	0	0	0	0.65148	1	13564	13564		40.778	0	1	435870	+		7470	16622	4059	4086	7629	7629					0.022829454577504293
DKILKEVSL	9	Unmodified	_DKILKEVSL_					0	0	0			REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.8812255859375	3	348.881497	1043.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.861	1	28.861	28.361	29.361	0								0	0	0	0.30504	1	9051	9051		34.173	3.6037	1		+		7471	12186	4060	4087	7630	7630					0.10259469308630287
DKILLFTTT	9	Unmodified	_DKILLFTTT_					0	0	0		COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant;COL21A1|p.E790Dfs*24|1|0.04|ENSG00000124749|chr6:56060778-56060779|-/AGAGGATATAAGTGAGGTGAAGAAGAAAACAGATAACA|frameshift_variant;COL21A1|p.G902Mfs*52|1|0.44|ENSG00000124749|chr6:56057828-56057829|-/GGAGGGCCCTCTGGACCTAAGATGGGACATT|frameshift_variant;nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1	COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.20635986328125	3	351.20598	1050.59611	1.45	0.00050925	-0.21724	-7.6295E-05	1.2328	0.00043296	351.20587421763514	21.466	0.86329	21.466	21.307	22.17	0					31	17	2	0	0	0	0.54267	1	7109	7109		21.686	0	1	1310400			7472	602	4061	4088	7631	7631					0.07283780417265007
DKKDLTEVI	9	Unmodified	_DKKDLTEVI_					0	0	0		tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.7978515625	2	530.797872	1059.58119	0.41447	0.00022	-0.3555	-0.0001887	0.058971	3.1302E-05	530.7975965236243	33.45	0.13384	33.45	33.398	33.532	0					7	4	2	0	0	0	0.22823	1	10876	10876		51.193	19.238	1	87849			7473	22884	4062	4089	7632	7632					0.05378288549286481
DKKPNFGV	8	Unmodified	_DKKPNFGV_					0	0	0			REV__nc|ENSG00000103342|P15170|GSPT1	REV__nc|ENSG00000103342|P15170|GSPT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7466125488281	2	452.747985	903.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.956	1	12.956	12.456	13.456	0								0	0	0	1.7419	1	2612	2612		33.516	3.1979	1		+		7474	13674	4063	4090	7633	7633					0.02581515726001271
DKKSDKKGKK	10	Unmodified	_DKKSDKKGKK_					0	0	0			REV__ENSG00000183035|ENST00000329312|CYLC1	REV__ENSG00000183035|ENST00000329312|CYLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	387.9047546386719	3	387.903183	1160.68772	3.5023	0.0013585	-0.15649	-6.0702E-05	3.3458	0.0012978	387.9031307438423	21.433	0.29598	21.433	21.361	21.657	0					17	9	3	0	0	0	0.54861	1	6145	6145		40.058	40.058	1	478440	+		7475	16909	4065	4091	7634	7634					0.11380463834461807
DKKSRSSLK	9	Unmodified	_DKKSRSSLK_					0	0	0		ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8118286132812	2	524.809105	1047.60366	3.4377	0.0018042	1.1533	0.00060525	4.591	0.0024094	524.8096763037621	37.733	0.39258	37.733	37.582	37.974	0					24	8	3	0	0	0	0.43488	1	14721	14721		18.262	0	1	3206200			7476	8882	4066	4092	7635	7635					0.08175932737572111
DKKTDLVL	8	Unmodified	_DKKTDLVL_					0	0	0			REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2764892578125	2	466.276575	930.538597	-0.66994	-0.00031238	0.48818	0.00022763	-0.18176	-8.475E-05	466.276706955186	36.552	0.22771	36.552	36.447	36.674	0					10	6	2	0	0	0	0.46013	1	13790	13790		64.207	2.0999	1	201560	+		7477	15104	4067	4093	7636	7636					0.07054938211717854
DKLDEHNIE	9	Unmodified	_DKLDEHNIE_					0	0	0			REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.76318359375	2	556.76456	1111.51457	0.56378	0.00031389	-2.5726	-0.0014323	-2.0088	-0.0011185	556.763198575793	22.28	0.3134	22.28	22.07	22.384	0					14	6	3	0	0	0	0.39215	1	7508	7508		42.396	1.8235	1	201660	+		7478	14488	4068	4094	7637	7637					-0.036729470126147135
DKLDQQSAL	9	Unmodified	_DKLDQQSAL_					0	0	0			REV__LRRC37A3|p.K1304Nfs*11|2|0.36|ENSG00000176809|chr17:64860234-64860234|T/-|frameshift_variant	REV__LRRC37A3|p.K1304Nfs*11|2|0.36|ENSG00000176809|chr17:64860234-64860234|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.26434326171875	2	509.264196	1016.51384	1.1723	0.000597	-4.0791	-0.0020773	-2.9068	-0.0014803	509.2635098770186	30.898	0.50283	30.898	30.59	31.093	0					23	11	4	0	0	0	0.11411	1	11588	11588		76.17	9.2078	1	687620	+		7479	16671	4069	4095	7638	7638					0.006242583383254896
DKLLERSL	8	Unmodified	_DKLLERSL_					0	0	0			REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2879333496094	2	487.287474	972.560395	-0.0011585	-5.6453E-07	-0.14726	-7.176E-05	-0.14842	-7.2325E-05	487.2876135529634	35.49	0.16055	35.49	35.414	35.575	0					10	8	2	0	0	0	0.66989	1	11629	11629		37.812	3.639	1	80775	+		7480	16402	4070	4096	7639	7639					0.0730174296027144
DKLQQSQKQ	9	Unmodified	_DKLQQSQKQ_					0	0	0			REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7985229492188	2	551.796195	1101.57784	3.6907	0.0020365	0.72564	0.00040041	4.4164	0.0024369	551.79651225972	15.57	0.3609	15.57	15.471	15.832	0					20	7	4	0	0	0	0.03984	1	4144	4144		99.375	0.74558	1	3335200	+		7481	14592	4071	4097	7640	7640					0.031110384952853565
DKNGTSLDIK	10	Unmodified	_DKNGTSLDIK_					0	0	0		tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.1961364746094	3	364.196144	1089.5666	0.47676	0.00017363	-0.46246	-0.00016843	0.014295	5.2061E-06	364.1959594017772	14.729	0.17172	14.729	14.605	14.777	0					11	4	3	0	0	0	0.63224	1	3658	3658		28.577	0	1	839360			7482	22890	4072	4098	7641	7641					0.0254021640114388
DKNGTSLDIK	10	Unmodified	_DKNGTSLDIK_					0	0	0		tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.1961975097656	3	364.196144	1089.5666	0.48464	0.0001765	-0.38292	-0.00013946	0.10172	3.7046E-05	364.1960131081179	14.671	0.16183	14.671	14.569	14.731	0					8	3	3	0	0	0	0.58308	1	3867	3867		41.109	4.7913	1	503230			7483	22890	4072	4098	7642	7642					0.0254021640114388
DKNITLLH	8	Unmodified	_DKNITLLH_					0	0	0		ENST00000553966.5_1_14:59814299-59830444:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1	ENST00000553966.5_1_14:59814299-59830444:+|nuORF	ENST00000553966.5_1_14:59814299-59830444:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2742004394531	2	477.274367	952.53418	0.008717	4.1604E-06	0.13435	6.4121E-05	0.14306	6.8281E-05	477.27445260881825	35.698	0.15608	35.698	35.613	35.769	0					10	7	2	0	0	0	0.23898	1	11707	11707		116.9	1.4095	1	90292			7484	735	4073	4099	7643	7643					0.056014737887949195
DKNITLLH	8	Unmodified	_DKNITLLH_					0	0	0		ENST00000553966.5_1_14:59814299-59830444:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1	ENST00000553966.5_1_14:59814299-59830444:+|nuORF	ENST00000553966.5_1_14:59814299-59830444:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.27410888671875	2	477.274367	952.53418	-2.8227	-0.0013472	2.4926	0.0011896	-0.33009	-0.00015754	477.27539694993993	35.769	0.15377	35.769	35.705	35.858	0					10	5	2	0	0	0	0.28427	1	12760	12760		87.754	2.3948	1	97239			7485	735	4073	4099	7644	7644					0.056014737887949195
DKPGDIIRE	9	Unmodified	_DKPGDIIRE_					0	0	0		ENST00000361337.2_1_20:39751926-39752103:+|nuORF	ENST00000361337.2_1_20:39751926-39752103:+|nuORF	ENST00000361337.2_1_20:39751926-39752103:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7799072265625	2	521.780013	1041.54547	1.6244	0.00084759	-0.82383	-0.00042986	0.80059	0.00041773	521.7795760831268	12.381	0.69899	12.381	12.091	12.79	0					57	19	4	0	0	0	0.42902	1	2545	2545		39.253	1.4413	1	3837800			7486	8870	4074	4100	7645	7645					0.026362510922808724
DKQFVLGK	8	Unmodified	_DKQFVLGK_					0	0	0			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.77105712890625	2	467.77146	933.528367	0.039445	1.8451E-05	0.55619	0.00026017	0.59564	0.00027862	467.7716244662378	37.588	0.26451	37.588	37.496	37.76	0					31	15	3	0	0	0	0.57171	1	12295	12295		52.937	2.9122	1	237780	+		7487	13866	4075	4101	7646	7646					0.05894375277148356
DKQFVLGK	8	Unmodified	_DKQFVLGK_					0	0	0			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.77130126953125	2	467.77146	933.528367	0.3363	0.00015731	-0.76931	-0.00035986	-0.43301	-0.00020255	467.7711056556065	37.914	0.42671	37.914	37.818	38.244	0					41	18	3	0	0	0	0.2678	1	14385	14385		93.195	9.9083	1	1334800	+		7488	13866	4075	4101	7647	7647					0.05894375277148356
DKQFVLGK	8	Unmodified	_DKQFVLGK_					0	0	0			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.772216796875	2	467.77146	933.528367	-1.0542	-0.00049312	1.29	0.00060341	0.23577	0.00011029	467.77201982609523	37.656	0.23808	37.656	37.577	37.815	0					30	13	3	0	0	0	0.51384	1	12712	12712		58.782	16.386	1	231870	+		7489	13866	4075	4101	7648	7648					0.05894375277148356
DKQFVLGK	8	Unmodified	_DKQFVLGK_					0	0	0			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7724304199219	2	467.77146	933.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.903	1	37.903	37.403	38.403	0								0	0	0	1.7419	1	14850	14850		71.877	7.6702	1		+		7490	13866	4075	4101	7649	7649					0.05894375277148356
DKQFVLGK	8	Unmodified	_DKQFVLGK_					0	0	0			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7710266113281	2	467.77146	933.528367	0.64258	0.00030058	-1.4499	-0.0006782	-0.80728	-0.00037762	467.77084216614065	37.879	0.39891	37.879	37.747	38.145	0					38	13	5	0	0	0	0.24328	1	14830	14830		113.41	17.364	1	1074800	+		7491	13866	4075	4101	7650	7650					0.05894375277148356
DKQFVLGK	8	Unmodified	_DKQFVLGK_					0	0	0			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.77178955078125	2	467.77146	933.528367	-0.1988	-9.2991E-05	0.74211	0.00034714	0.54331	0.00025415	467.7718373193447	37.651	0.18404	37.651	37.591	37.775	0					15	8	3	0	0	0	0.57171	1	13468	13468		52.937	5.0211	1	94329	+		7492	13866	4075	4101	7651	7651					0.05894375277148356
DKQFVLGK	8	Unmodified	_DKQFVLGK_					0	0	0			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.77166748046875	2	467.77146	933.528367	-0.51032	-0.00023871	0.19115	8.9412E-05	-0.31918	-0.0001493	467.77150258658475	37.812	0.43502	37.812	37.708	38.143	0					20	9	3	0	0	0	0.41	1	14804	14804		69.628	1.1429	1	953740	+		7493	13866	4075	4101	7652	7652					0.05894375277148356
DKQIGPCLIL	10	Unmodified	_DKQIGPCLIL_					0	0	0			REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3094482421875	2	550.312635	1098.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.791	1	39.791	39.291	40.291	0								0	0	0	0.35072	1	14171	14171		42.864	2.0861	1		+		7494	19446	4076	4102	7653	7653					0.06535529293773834
DKRKSKLK	8	Unmodified	_DKRKSKLK_					0	0	0			REV__chr20:9337548-9338008|146|21.64|0.06|8.54|+|1|TE_info:L2c,L2c_dup131970,L2,LINE,donor,-,9337306,9337548|None,PLCB4|4	REV__chr20:9337548-9338008|146|21.64|0.06|8.54|+|1|TE_info:L2c,L2c_dup131970,L2,LINE,donor,-,9337306,9337548|None,PLCB4|4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8246765136719	2	501.824558	1001.63456	-0.55891	-0.00028048	1.2003	0.00060232	0.64135	0.00032185	501.8251538675623	15.236	0.87199	15.236	14.508	15.38	0					24	17	2	0	0	0	0.70598	1	3932	3932		32.812	1.2826	1	65957	+		7495	12487	4077	4103	7654	7654					0.13381130842458333
DKRSKALKA	9	Unmodified	_DKRSKALKA_					0	0	0		nc|ENSG00000156411|P56378-2|ATP5MJ;ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000553449.1_1_14:104379005-104387837:-|nuORF	nc|ENSG00000156411|P56378-2|ATP5MJ	nc|ENSG00000156411|P56378-2|ATP5MJ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.81658935546875	2	508.81419	1015.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.018	1	31.018	30.518	31.518	0								0	0	0	0.33579	1	10241	10241		28.081	2.5074	1				7496	5170	4078	4104	7655	7655					0.10664540462789773
DKRSSLYFP	9	Unmodified	_DKRSSLYFP_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.792236328125	2	556.790381	1111.56621	3.5117	0.0019553	-0.2377	-0.00013235	3.2739	0.0018229	556.7904259794645	29.134	0.95515	29.134	28.826	29.781	0					38	19	4	0	0	0	0.078509	1	10647	10647		90.777	27.243	1	5107100			7497	4169	4079	4105	7656	7656					0.014888414719507637
DKRTKLIKE	9	Unmodified	_DKRTKLIKE_					0	0	0			REV__ADAM7|p.L594Yfs*29|2|0.18|ENSG00000069206|chr8:24493162-24493162|T/-|frameshift_variant	REV__ADAM7|p.L594Yfs*29|2|0.18|ENSG00000069206|chr8:24493162-24493162|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.56939697265625	3	377.567912	1129.68191	3.2552	0.0012291	0.16635	6.2808E-05	3.4216	0.0012919	377.56797735402046	29.543	1.4397	29.543	29.375	30.814	0					65	29	3	0	0	0	0.47473	1	10841	10841		35.152	3.5178	1	335110	+		7498	12066	4080	4106	7657	7657					0.12225365322797188
DKSKHVIYAP	10	Unmodified	_DKSKHVIYAP_					0	0	0		nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1	nc|ENSG00000086205|Q04609-9|FOLH1	nc|ENSG00000086205|Q04609-9|FOLH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.3172607421875	2	579.319306	1156.62406	-0.048896	-2.8326E-05	-2.5178	-0.0014586	-2.5667	-0.001487	579.3172136238156	27.619	0.17595	27.619	27.489	27.665	0					6	4	2	0	0	0	0.37692	1	9680	9680		58.782	3.698	1	249550			7499	11443	4081	4107	7658	7658					0.05201103397371298
DKSQPKSIR	9	Unmodified	_DKSQPKSIR_					0	0	0		nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8016967773438	2	529.80128	1057.58801	1.63	0.00086358	-0.36525	-0.00019351	1.2648	0.00067007	529.8013771711951	12.83	0.20313	12.83	12.727	12.93	0					6	4	2	0	0	0	0.27249	1	2842	2842		52.937	3.4007	1	93846			7500	1301	4082	4108	7659	7659					0.06151646220496332
DKTLRTRSK	9	Unmodified	_DKTLRTRSK_					0	0	0		ST18|p.S141Ffs*8|1|0.06|ENSG00000147488|chr8:52172441-52172442|-/CATAAAAA|frameshift_variant;ST18|p.N621Ifs*10|2|0.23|ENSG00000147488|chr8:52149922-52149922|T/-|frameshift_variant;ST18|p.E810Kfs*5|1|0.31|ENSG00000147488|chr8:52133074-52133074|T/-|frameshift_variant;ST18|p.F884Lfs*27|1|0.33|ENSG00000147488|chr8:52131972-52131972|A/-|frameshift_variant;ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant;ENSG00000147488|ENST00000689386|ST18	ST18|p.S141Ffs*8|1|0.06|ENSG00000147488|chr8:52172441-52172442|-/CATAAAAA|frameshift_variant	ST18|p.S141Ffs*8|1|0.06|ENSG00000147488|chr8:52172441-52172442|-/CATAAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8888854980469	3	368.887645	1103.64111	3.1825	0.001174	0.28568	0.00010538	3.4682	0.0012794	368.8877041547391	17.455	0.26187	17.455	17.353	17.615	0					9	5	3	0	0	0	0.38666	1	5049	5049		42.864	2.8061	1	2182800			7501	4785	4083	4109	7660	7660					0.09343024003192113
DKTVDERSM	9	Unmodified	_DKTVDERSM_					0	0	0			REV__MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant	REV__MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7535400390625	2	540.753138	1079.49172	0.036296	1.9627E-05	0.98096	0.00053046	1.0173	0.00055009	540.7534603937936	26.241	0.20653	26.241	26.177	26.383	0					12	6	3	0	0	0	0.38666	1	8223	8223		42.864	1.4377	1	144620	+		7502	13846	4084	4110	7661	7661					-0.04484289401739261
DKVDHADE	8	Unmodified	_DKVDHADE_					0	0	0			REV__ANKEF1|p.Y524Tfs*5|1|0.27|ENSG00000132623|chr20:10050138-10050141|TTAT/-|frameshift_variant	REV__ANKEF1|p.Y524Tfs*5|1|0.27|ENSG00000132623|chr20:10050138-10050141|TTAT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2392578125	2	464.703971	927.393389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.275	1	21.275	20.775	21.775	0								0	0	0	1.7419	1	6081	6081		30.318	2.4355	1		+		7503	12156	4085	4111	7662	7662					-0.07321149655285808
DKYKVIEIK	9	Unmodified	_DKYKVIEIK_					0	0	0		tr|U7SQP2|U7SQP2_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01646PE=4SV=1	tr|U7SQP2|U7SQP2_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01646PE=4SV=1	tr|U7SQP2|U7SQP2_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01646PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.2820434570312	2	568.339707	1134.66486	0.23956	0.00013615	1.2169	0.00069161	1.4565	0.00082776	568.3401386248285	25.484	0.36227	25.484	25.375	25.738	0					12	7	3	0	0	0	0.57679	1	9015	9015		30.318	7.2752	1	587520			7504	22705	4086	4112	7663	7663					0.10291444716972364
DLAKASPKR	9	Unmodified	_DLAKASPKR_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2928771972656	2	493.293091	984.571629	0.77701	0.00038329	-1.4806	-0.00073035	-0.70356	-0.00034706	493.2921640051227	28.81	0.37146	28.81	28.73	29.101	0					12	9	2	0	0	0	0.41958	1	10236	10236		40.058	3.6114	1	110690			7505	3802	4087	4113	7664	7664					0.07872565054424285
DLANAQIPV	9	Unmodified	_DLANAQIPV_					0	0	0			REV__RAB3IP|p.K281Rfs*13|1|0.3|ENSG00000127328|chr12:69795246-69795246|A/-|frameshift_variant	REV__RAB3IP|p.K281Rfs*13|1|0.3|ENSG00000127328|chr12:69795246-69795246|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7569274902344	2	470.758549	939.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.385	1	28.385	27.885	28.885	0								0	0	0	0.24724	1	8861	8861		44.117	5.3107	1		+		7506	14485	4088	4114	7665	7665					0.03037481034857592
DLANKVPKG	9	Unmodified	_DLANKVPKG_					0	0	0			REV__PLA2G7|p.I267*|1|0.17|ENSG00000146070|chr6:46709397-46709397|T/-|frameshift_variant	REV__PLA2G7|p.I267*|1|0.17|ENSG00000146070|chr6:46709397-46709397|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2740783691406	2	471.274367	940.53418	-0.42036	-0.0001981	0.25504	0.00012019	-0.16532	-7.7909E-05	471.27442312883016	30.482	0.35712	30.482	30.414	30.771	0					24	14	2	0	0	0	0.55379	1	9718	9718		26.693	0	1	91509	+		7507	15301	4089	4115	7666	7666					0.0615347378881097
DLAPEVSVLYT	11	Unmodified	_DLAPEVSVLYT_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.8803405761719	3	402.879933	1205.61797	0.60841	0.00024512	-0.46784	-0.00018849	0.14056	5.663E-05	402.87981087462384	28.771	0.11451	28.771	28.686	28.8	0					7	4	2	0	0	0	0.70921	1	8995	8995		26.75	2.5179	1	82195	+		7508	16789	4090	4116	7667	7667					0.023385403751944978
DLATWNFQ	8	Unmodified	_DLATWNFQ_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9;PTPN9|p.L251P|1|0.09|ENSG00000169410|chr15:75505891-75505891|A/G|missense_variant	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7369689941406	2	497.735074	993.455596	3.3911	0.0016879	0.37805	0.00018817	3.7692	0.0018761	497.7353971678593	26.819	0.39977	26.819	26.691	27.091	0					33	14	3	0	0	0	0.69548	1	8442	8442		34.173	5.023	1	186320			7509	6163	4091	4117	7668	7668					-0.0413937851629953
DLCNGVDH	8	Unmodified	_DLCNGVDH_					0	0	0		nc|ENSG00000124159|O95460-3|MATN4;nc|ENSG00000124159|O95460-4|MATN4;ENSG00000124159|ENST00000372756|MATN4;nc|ENSG00000124159|O95460|MATN4	nc|ENSG00000124159|O95460-3|MATN4	nc|ENSG00000124159|O95460-3|MATN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.6802062988281	2	436.681985	871.349416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.622	1	49.622	49.122	50.122	0								0	0	0	1.7419	1	16340	16340		12.959	0.75233	1				7510	3349	4092	4118	7669	7669					-0.0914045735325999
DLDGSFLMIM	10	Unmodified	_DLDGSFLMIM_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.2691650390625	2	571.267035	1140.51952	0.090086	5.1463E-05	3.9749	0.0022707	4.065	0.0023222	571.2693334715714	36.666	0.17765	36.666	36.592	36.77	0					15	9	2	0	0	0	0.52707	1	12417	12417		42.396	0.96952	1	101900	+		7511	15462	4093	4119	7670	7670					-0.045121024658783426
DLDLKLQLT	9	Unmodified	_DLDLKLQLT_					0	0	0		ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.5410461425781	3	353.541252	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.994	1	26.994	26.494	27.494	0								0	0	0	0.37786	1	8772	8772		17.468	0.75062	1				7512	10965	4094	4120	7671	7671					0.0754287892893899
DLEHVSALV	9	Unmodified	_DLEHVSALV_					0	0	0			REV__ENST00000495607.5_1_22:50752441-50754573:-|nuORF	REV__ENST00000495607.5_1_22:50752441-50754573:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.7636413574219	2	491.763832	981.513111	-1.2621	-0.00062065	0.96615	0.00047512	-0.29595	-0.00014554	491.76438888604974	35.503	0.28575	35.503	35.395	35.68	0					28	14	3	0	0	0	0.41354	1	12006	12006		40.573	3.4135	1	316960	+		7513	17528	4095	4121	7672	7672					0.021614636892991257
DLEIIKHKSQ	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DLEIIKHKSQ_					1	0	0			REV__ENSG00000129151|ENST00000263182|BBOX1	REV__ENSG00000129151|ENST00000263182|BBOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.84814453125	2	626.848427	1251.6823	0.18826	0.00011801	-0.73115	-0.00045832	-0.54289	-0.00034031	626.8480184166076	26.94	0.17492	26.94	26.872	27.046	0					11	5	3	0	0	0	0.39566	1	8252	8252		56.721	12.344	1	281870	+		7514	14540	4096	4122	7673	7673					0.06652740252002332
DLEIKKKPH	9	Unmodified	_DLEIKKKPH_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.8904724121094	3	369.888874	1106.64479	-0.11379	-4.2089E-05	3.1774	0.0011753	3.0636	0.0011332	369.89008171934313	33.704	0.29253	33.704	33.569	33.862	0					12	8	2	0	0	0	0.56424	1	11840	11840		25.574	2.0514	1	55244	+		7515	17201	4097	4123	7674	7674					0.09573693777042536
DLEKQHLK	8	Unmodified	_DLEKQHLK_					0	0	0		CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.7848815917969	2	505.785099	1009.55564	-0.07495	-3.7909E-05	0.37683	0.0001906	0.30188	0.00015269	505.78528124212187	27.589	0.15017	27.589	27.492	27.642	0					9	5	2	0	0	0	0.63077	1	8521	8521		44.117	1.2525	1	76236			7516	484	4098	4124	7675	7675					0.05124858817521272
DLERAWVDT	9	Unmodified	_DLERAWVDT_					0	0	0			REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7682495117188	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.508	1	36.508	36.008	37.008	0								0	0	0	0.12601	1	13775	13775		40.778	0	1		+		7517	12784	4099	4125	7676	7676					-0.022883392873836783
DLERAWVDT	9	Unmodified	_DLERAWVDT_					0	0	0			REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7697143554688	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.442	1	52.442	51.942	52.942	0								0	0	0	0.28666	1	20367	20367		16.473	0.83134	1		+		7518	12784	4099	4125	7677	7677					-0.022883392873836783
DLEYNLKF	8	Unmodified	_DLEYNLKF_					0	0	0			REV__tr|U7STJ5|U7STJ5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01507PE=3SV=1	REV__tr|U7STJ5|U7STJ5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01507PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2652587890625	2	521.266207	1040.51786	0.73828	0.00038484	-0.37512	-0.00019554	0.36315	0.0001893	521.2658640223701	37.533	0.097015	37.533	37.471	37.568	0					8	5	2	0	0	0	0.78978	1	12291	12291		21.96	0	1	48542	+		7519	21923	4100	4126	7678	7678					-0.0007765216794268781
DLFFLDFL	8	Unmodified	_DLFFLDFL_					0	0	0			REV__ENST00000423113.5_1_10:33190231-33190324:-|nuORF	REV__ENST00000423113.5_1_10:33190231-33190324:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2681274414062	2	515.268219	1028.52188	0.15581	8.0286E-05	-0.42213	-0.00021751	-0.26632	-0.00013722	515.2680067047866	31.167	0.90325	31.167	30.831	31.735	0					45	18	4	0	0	0	0.49887	1	11759	11759		60.294	0	1	932070	+		7520	19095	4101	4127	7679	7679					0.008764373257463376
DLFLKNGLA	9	Unmodified	_DLFLKNGLA_					0	0	0			REV__FAM217B|p.S71L|1|0.11|ENSG00000196227|chr20:59944155-59944155|C/T|missense_variant	REV__FAM217B|p.S71L|1|0.11|ENSG00000196227|chr20:59944155-59944155|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.78411865234375	2	495.784567	989.554582	-1.2194	-0.00060455	1.8244	0.00090451	0.60502	0.00029996	495.7854671122603	38.422	0.1767	38.422	38.339	38.516	0					16	9	2	0	0	0	0.15163	1	12953	12953		51.335	0	1	151980	+		7521	20660	4102	4128	7680	7680					0.0593864444861083
DLFRRYEK	8	Unmodified	_DLFRRYEK_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;nc|ENSG00000138162|O95359-2|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.805908203125	2	563.803823	1125.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.367	1	21.367	20.867	21.867	0								0	0	0	1.7419	1	5877	5877		23.042	2.0956	1				7522	4235	4103	4129	7681	7681					0.035319500831292316
DLGLRSVV	8	Unmodified	_DLGLRSVV_					0	0	0			REV__nc|ENSG00000160282|O95954-3|FTCD	REV__nc|ENSG00000160282|O95954-3|FTCD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7554931640625	2	429.75581	857.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.064	1	31.064	30.564	31.564	0								0	0	0	1.7419	1	10655	10655		35.618	3.6634	1		+		7523	15744	4104	4130	7682	7682					0.06261802243045622
DLGRSAMD	8	Oxidation (M)	_DLGRSAM(Oxidation (M))D_		DLGRSAM(1)D		DLGRSAM(66)D	0	0	1			REV__DDX49|p.V307M|1|0.23|ENSG00000105671|chr19:18924689-18924689|G/A|missense_variant	REV__DDX49|p.V307M|1|0.23|ENSG00000105671|chr19:18924689-18924689|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.69525146484375	2	440.695092	879.375631	0.71351	0.00031444	-0.32549	-0.00014344	0.38802	0.000171	440.6949655884925	27.854	0.61306	27.854	27.746	28.359	0					29	12	4	0	0	0	0.44433	1	10030	10030		65.803	7.0212	1	2835100	+		7524	12687	4105	4131	7683	7683		485			-0.06888188181778787
DLGSRKLE	8	Unmodified	_DLGSRKLE_					0	0	0		ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2559509277344	2	459.256174	916.497795	-0.42369	-0.00019458	-1.4502	-0.00066599	-1.8738	-0.00086058	459.25607374808095	27.429	0.24213	27.429	27.291	27.533	0					17	8	3	0	0	0	0.67394	1	8431	8431		37.159	1.5408	1	206220			7525	7867	4106	4132	7684	7684					0.03620596892085359
DLHGFSSSL	9	Unmodified	_DLHGFSSSL_					0	0	0		FGF16|p.R172Gfs*20|1|0.33|ENSG00000196468|chrX:77456409-77456409|C/-|frameshift_variant;FGF16|p.L187Ffs*9|1|0.24|ENSG00000196468|chrX:77456453-77456454|-/T|frameshift_variant;ENSG00000196468|ENST00000439435|FGF16	FGF16|p.R172Gfs*20|1|0.33|ENSG00000196468|chrX:77456409-77456409|C/-|frameshift_variant	FGF16|p.R172Gfs*20|1|0.33|ENSG00000196468|chrX:77456409-77456409|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7327880859375	2	481.732532	961.45051	-0.28851	-0.00013899	0.32317	0.00015568	0.034654	1.6694E-05	481.7327461582852	30.951	0.1013	30.951	30.903	31.005	0					4	2	2	0	0	0	0.39215	1	10614	10614		42.396	1.618	1	76562			7526	7366	4107	4133	7685	7685					-0.03175682378889633
DLHKSLKK	8	Unmodified	_DLHKSLKK_					0	0	0		tr|U7SF42|U7SF42_FUSNUSmallribosomalsubunitproteinuS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsBPE=3SV=1	tr|U7SF42|U7SF42_FUSNUSmallribosomalsubunitproteinuS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsBPE=3SV=1	tr|U7SF42|U7SF42_FUSNUSmallribosomalsubunitproteinuS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7983703613281	2	484.798009	967.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.911	1	14.911	14.411	15.411	0								0	0	0	1.7419	1	3310	3310		42.396	5.237	1				7527	22566	4108	4134	7686	7686					0.09637753059814713
DLHSVLAQ	8	Unmodified	_DLHSVLAQ_					0	0	0		ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF;ENST00000485623.5_1_2:234160473-234172712:+|nuORF;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;ENSG00000085978|ENST00000392017|ATG16L1	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.73858642578125	2	441.737617	881.460681	0.38418	0.00016971	-0.22896	-0.00010114	0.15522	6.8567E-05	441.7374571921942	20.477	1.0894	20.477	19.587	20.677	0					48	25	3	0	0	0	0.75243	1	5505	5505		26.796	2.5934	1	211740			7528	248;1739	4109	4135	7687	7687					0.015209253463353889
DLIKKYVQ	8	Unmodified	_DLIKKYVQ_					0	0	0			REV__ENST00000460328.5_1_21:38468948-38469062:+|nuORF	REV__ENST00000460328.5_1_21:38468948-38469062:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.80047607421875	2	503.800217	1005.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.006	1	27.006	26.506	27.506	0								0	0	0	1.7419	1	8277	8277		31.955	4.0726	1		+		7529	19368	4110	4136	7688	7688					0.08331217482702868
DLILCFSPAI	10	Unmodified	_DLILCFSPAI_					0	0	0		ADAT1|p.F133Lfs*39|1|0.35|ENSG00000065457|chr16:75617167-75617167|A/-|frameshift_variant	ADAT1|p.F133Lfs*39|1|0.35|ENSG00000065457|chr16:75617167-75617167|A/-|frameshift_variant	ADAT1|p.F133Lfs*39|1|0.35|ENSG00000065457|chr16:75617167-75617167|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.2928466796875	2	546.293911	1090.57327	1.2049	0.00065821	-2.5857	-0.0014126	-1.3809	-0.00075437	546.2925029420903	23.523	0.13611	23.523	23.431	23.568	0					7	5	2	0	0	0	0.52707	1	6817	6817		42.396	1.8235	1	58150			7530	64	4111	4137	7689	7689					0.031604380281578415
DLIRGTVL	8	Unmodified	_DLIRGTVL_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.771240234375	2	443.77146	885.528367	0.77067	0.000342	-1.9215	-0.00085272	-1.1508	-0.00051071	443.77072165730067	43.595	0.21861	43.595	43.492	43.71	0					9	6	2	0	0	0	0.66095	1	17459	17459		39.253	0	1	81177			7531	6522	4112	4138	7690	7690					0.08102375277132978
DLIVAQPY	8	Unmodified	_DLIVAQPY_					0	0	0		ENST00000273368.8_1_3:111717934-111718274:+|nuORF	ENST00000273368.8_1_3:111717934-111718274:+|nuORF	ENST00000273368.8_1_3:111717934-111718274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7516174316406	2	459.750193	917.485833	-0.15485	-7.1193E-05	2.4394	0.0011215	2.2846	0.0010503	459.7514957877248	34.507	0.17868	34.507	34.424	34.602	0					6	4	2	0	0	0	0.63077	1	13317	13317		44.117	5.3107	1	45324			7532	8390	4113	4139	7691	7691					0.023789801488987905
DLLETHVA	8	Unmodified	_DLLETHVA_					0	0	0			REV__ENST00000513466.5_1_3:129823014-129828039:-|nuORF	REV__ENST00000513466.5_1_3:129823014-129828039:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.2374572753906	2	449.23745	896.460347	-0.39647	-0.00017811	1.9989	0.000898	1.6025	0.00071989	449.23848717430485	29.166	0.46574	29.166	28.959	29.424	0					22	9	3	0	0	0	0.4723	1	10618	10618		62.978	2.6845	1	1481800	+		7533	19892	4114	4140	7692	7692					0.007975056264740488
DLLHRVKPA	9	Unmodified	_DLLHRVKPA_					0	0	0		KLHL36|p.G345Afs*39|1|0.21|ENSG00000135686|chr16:84657836-84657836|G/-|frameshift_variant;KLHL36|p.G451Afs*29|1|0.24|ENSG00000135686|chr16:84661629-84661629|G/-|frameshift_variant;nc|ENSG00000135686|Q8N4N3-2|KLHL36;ENSG00000135686|ENST00000564996|KLHL36	KLHL36|p.G345Afs*39|1|0.21|ENSG00000135686|chr16:84657836-84657836|G/-|frameshift_variant	KLHL36|p.G345Afs*39|1|0.21|ENSG00000135686|chr16:84657836-84657836|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8170166015625	2	524.816733	1047.61891	0.69077	0.00036253	0.046864	2.4595E-05	0.73764	0.00038712	524.8168568810764	18.035	0.16087	18.035	17.945	18.106	0					9	4	3	0	0	0	0.078509	1	4411	4411		79.451	15.244	1	537960			7534	4013	4115	4141	7693	7693					0.09700844325402613
DLLIPVGVMQ	10	Unmodified	_DLLIPVGVMQ_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.8070678710938	2	542.807185	1083.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.93	1	13.93	13.43	14.43	0								0	0	0	0.4201	1	2799	2799		15.642	2.6826	1				7535	3679	4116	4142	7694	7694					0.06136126919500384
DLLKAVSKHPF	11	Unmodified	_DLLKAVSKHPF_					0	0	0			REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF	REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.91265869140625	3	418.911679	1253.71321	2.6812	0.0011232	-0.55018	-0.00023048	2.131	0.00089269	418.9115451356993	36.692	0.60678	36.692	36.496	37.103	0					45	12	5	0	0	0	0.63225	1	14255	14255		34.087	4.5358	1	1682600	+		7536	20112	4117	4143	7695	7695					0.09649938356869825
DLLNCALSLK	10	Unmodified	_DLLNCALSLK_					0	0	0		FEZF1|p.T196Rfs*3|1|0.18|ENSG00000128610|chr7:122303852-122303852|T/-|frameshift_variant;FEZF1|p.L190Ffs*14|1|0.32|ENSG00000128610|chr7:122303871-122303872|-/G|frameshift_variant;FEZF1|p.I241Sfs*35|2|0.24|ENSG00000128610|chr7:122303717-122303717|T/-|frameshift_variant;nc|ENSG00000128610|A0PJY2-2|FEZF1;nc|ENSG00000128610|A0PJY2-3|FEZF1;ENSG00000128610|ENST00000442488|FEZF1	FEZF1|p.T196Rfs*3|1|0.18|ENSG00000128610|chr7:122303852-122303852|T/-|frameshift_variant	FEZF1|p.T196Rfs*3|1|0.18|ENSG00000128610|chr7:122303852-122303852|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3013916015625	2	545.302267	1088.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.767	1	23.767	23.267	24.267	0								0	0	0	0.021408	1	7914	7914		98.582	2.7668	1				7537	3555	4118	4144	7696	7696					0.049229389141146385
DLLQRTMLN	9	Unmodified	_DLLQRTMLN_					0	0	0			REV__ENSG00000254550|ENST00000529803|OMP	REV__ENSG00000254550|ENST00000529803|OMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.2984008789062	2	552.297516	1102.58048	-1.2823	-0.00070823	2.3956	0.0013231	1.1132	0.00061484	552.298597518094	34.103	0.18283	34.103	34.015	34.198	0					8	5	2	0	0	0	0.49448	1	12041	12041		40.058	0	1	67470	+		7538	17745	4120	4145	7697	7697					0.03329170628603606
DLLWTGIQY	9	Unmodified	_DLLWTGIQY_					0	0	0			REV__ENSG00000164690|ENST00000297261|SHH	REV__ENSG00000164690|ENST00000297261|SHH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7875366210938	2	554.787307	1107.56006	-1.1005	-0.00061055	0.7297	0.00040483	-0.37081	-0.00020572	554.787732598822	35.012	0.93358	35.012	34.637	35.57	0					49	32	2	0	0	0	0.44593	1	12643	12643		37.812	2.1932	1	62625	+		7539	16000	4121	4146	7698	7698					0.010583232404314913
DLMHTWCRHG	10	Unmodified	_DLMHTWCRHG_					0	0	0			REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	628.2777099609375	2	628.276592	1254.53863	0.19053	0.0001197	0.64299	0.00040398	0.83352	0.00052368	628.2774903852138	26.675	0.10701	26.675	26.612	26.719	0					6	3	2	0	0	0	0.61238	1	8144	8144		27.882	0	1	60440	+		7540	16237	4122	4147	7699	7699					-0.07845708331592505
DLMLEFTF	8	Unmodified	_DLMLEFTF_					0	0	0			REV__PARVB|p.A322T|1|0.45|ENSG00000188677|chr22:44163876-44163876|G/A|missense_variant	REV__PARVB|p.A322T|1|0.45|ENSG00000188677|chr22:44163876-44163876|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2450256347656	2	508.243886	1014.47322	0.91703	0.00046608	2.4036	0.0012216	3.3207	0.0016877	508.2449534276493	28.08	0.17986	28.08	28.017	28.197	0					11	6	2	0	0	0	0.64096	1	8758	8758		42.474	5.3154	1	61067	+		7541	21338	4123	4148	7700	7700					-0.0334379930563955
DLNAIQFQTNQ	11	Unmodified	_DLNAIQFQTNQ_					0	0	0			REV__tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	REV__tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	646.3211059570312	2	646.317491	1290.62043	2.8898	0.0018677	2.5879	0.0016726	5.4777	0.0035404	646.3191371256936	33.688	0.27578	33.688	33.566	33.842	0					8	6	2	0	0	0	0.23242	1	12864	12864		70.399	2.9049	1	303620	+		7542	21967	4124	4149	7701	7701					-0.01325611167135321
DLNCNPNNK	9	Unmodified	_DLNCNPNNK_					0	0	0		nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4;nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.23291015625	2	516.232373	1030.45019	0.095469	4.9284E-05	1.664	0.00085899	1.7594	0.00090828	516.2331665922184	16.503	0.13181	16.503	16.417	16.549	0					8	3	3	0	0	0	0.61124	1	3963	3963		19.997	2.6318	1	210960			7543	4054	4125	4150	7702	7702					-0.06381425370432225
DLNEVKEL	8	Unmodified	_DLNEVKEL_					0	0	0		nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.25555419921875	2	480.25584	958.497126	0.50021	0.00024023	-0.77715	-0.00037323	-0.27694	-0.000133	480.2554763081437	31.542	0.4983	31.542	31.372	31.871	0					37	12	4	0	0	0	0.41	1	11463	11463		69.628	4.1622	1	2278200			7544	4254	4126	4151	7703	7703					0.01621757452392103
DLNIWCPSEHK	11	Unmodified	_DLNIWCPSEHK_					0	0	0			REV__ENST00000456917.1_1_21:26946409-26946478:+|nuORF	REV__ENST00000456917.1_1_21:26946409-26946478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	671.3140869140625	2	671.316437	1340.61832	-0.78705	-0.00052836	-2.313	-0.0015528	-3.1001	-0.0020811	671.3147489218362	30.562	0.22769	30.562	30.475	30.703	0					8	5	2	0	0	0	0.65797	1	11041	11041		31.634	7.4025	1	295780	+		7545	19352	4127	4152	7704	7704					-0.03836363176606028
DLPMEIDIVI	10	Oxidation (M)	_DLPM(Oxidation (M))EIDIVI_		DLPM(1)EIDIVI		DLPM(77)EIDIVI	0	0	1		sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1;sp|F5HH39|UL21A_HCMVMUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL21APE=3SV=1	sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1	sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.309326171875	2	587.307215	1172.59988	3.1954	0.0018767	0.47012	0.00027611	3.6655	0.0021528	587.3074792946331	33.223	0.31094	33.223	33.121	33.432	0					19	6	4	0	0	0	0.22198	1	12621	12621		76.774	15.802	1	802440			7546	22456	4128	4153	7705	7705		811			0.02048082128817441
DLPVRPLPT	9	Unmodified	_DLPVRPLPT_					0	0	0			REV__ENST00000487288.1_1_7:99711182-99711832:-|nuORF	REV__ENST00000487288.1_1_7:99711182-99711832:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.496	1	38.496	37.996	38.996	0								0	0	0	0.34845	1	15140	15140		20.03	0	1		+		7547	13818	4129	4154	7706	7706					0.0781033333993264
DLQCFWIIL	9	Unmodified	_DLQCFWIIL_					0	0	0		ENST00000424459.7_2_5:56471341-56471416:+|nuORF	ENST00000424459.7_2_5:56471341-56471416:+|nuORF	ENST00000424459.7_2_5:56471341-56471416:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.8042602539062	2	575.801903	1149.58925	-0.2712	-0.00015616	3.2324	0.0018612	2.9613	0.0017051	575.8041496676949	35.348	0.11085	35.348	35.271	35.382	0					5	3	2	0	0	0	0.26904	1	13696	13696		53.351	1.8237	1	78127			7548	9421	4130	4155	7707	7707					0.020441442650735553
DLQGTLPHQER	11	Unmodified	_DLQGTLPHQER_					0	0	0		ENST00000501294.1_1_11:115628790-115629563:-|nuORF	ENST00000501294.1_1_11:115628790-115629563:-|nuORF	ENST00000501294.1_1_11:115628790-115629563:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	647.3313598632812	2	647.330933	1292.64731	0.2249	0.00014558	-0.033345	-2.1585E-05	0.19155	0.000124	647.3310036718663	22.591	0.33063	22.591	22.423	22.754	0					32	10	4	0	0	0	0.55715	1	6374	6374		40.058	8.4239	1	1076700			7549	10147	4131	4156	7708	7708					0.012694974440364604
DLQQNIRTV	9	Unmodified	_DLQQNIRTV_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13;REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.7999267578125	2	543.798737	1085.58292	1.8226	0.00099111	0.43336	0.00023566	2.2559	0.0012268	543.7990115467893	16.949	0.10783	16.949	16.888	16.996	0					9	4	3	0	0	0	0.11898	1	3952	3952		75.043	0	1	294370	+		7550	12863;13891	4132	4157	7709	7709					0.043553423578941874
DLQTDQPVL	9	Unmodified	_DLQTDQPVL_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7666625976562	2	514.766571	1027.51859	0.024353	1.2536E-05	0.892	0.00045917	0.91635	0.00047171	514.7666650711822	26.404	0.39573	26.404	26.276	26.671	0					17	9	2	0	0	0	0.07136	1	9088	9088		87.696	2.5356	1	2579700			7551	6090	4133	4158	7710	7710					0.005931424811024044
DLQTLNVQ	8	Unmodified	_DLQTLNVQ_					0	0	0		nc|ENSG00000183580|Q9UJT9-2|FBXL7;ENSG00000183580|ENST00000504595|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7482604980469	2	465.748182	929.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.664	1	37.664	37.164	38.164	0								0	0	0	1.7419	1	14295	14295		29.15	0	1				7552	6971	4134	4159	7711	7711					0.014248906551983964
DLREERVSF	9	Unmodified	_DLREERVSF_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.2000732421875	3	384.199889	1149.57784	-0.5828	-0.00022391	0.74228	0.00028519	0.15949	6.1276E-05	384.2001697911002	33.965	0.11302	33.965	33.908	34.021	0					6	2	3	0	0	0	0.24334	1	12977	12977		56.434	21.282	1	304280			7553	6620	4135	4160	7712	7712					0.009030384952893655
DLREERVSF	9	Unmodified	_DLREERVSF_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.7973022460938	2	575.796195	1149.57784	0.15132	8.7127E-05	0.68138	0.00039234	0.8327	0.00047946	575.7967145408294	33.965	0.16118	33.965	33.908	34.069	0					5	3	2	0	0	0	0.40353	1	12979	12979		14.137	0	1	153230			7554	6620	4135	4160	7713	7713					0.009030384952893655
DLRPAYLV	8	Unmodified	_DLRPAYLV_					0	0	0			REV__ENSG00000105376|ENST00000221980|ICAM5	REV__ENSG00000105376|ENST00000221980|ICAM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7731018066406	2	473.77146	945.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.253	1	23.253	22.753	23.753	0								0	0	0	1.7419	1	7066	7066		33.516	1.5607	1		+		7555	13772	4136	4161	7714	7714					0.05342375277143674
DLRSPVWT	8	Unmodified	_DLRSPVWT_					0	0	0			REV__ENSG00000126461|ENST00000360565|SCAF1	REV__ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7605285644531	2	487.258717	972.50288	0.63167	0.00030779	-1.144	-0.00055744	-0.51236	-0.00024965	487.2581514386617	39.224	0.54385	39.224	38.919	39.463	0					49	18	4	0	0	0	0.70055	1	15324	15324		33.516	0	1	5500300	+		7556	14467	4137	4162	7715	7715					0.015529007547229412
DLRWYRRK	8	Unmodified	_DLRWYRRK_					0	0	0			REV__PRKD1|p.H442R|1|0.22|ENSG00000184304|chr14:29632936-29632936|T/C|missense_variant	REV__PRKD1|p.H442R|1|0.22|ENSG00000184304|chr14:29632936-29632936|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	398.2278137207031	3	398.228113	1191.66251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.579	1	13.579	13.079	14.079	0								0	0	0	1.7419	1	3121	3121		29.15	8.2026	1		+		7557	21414	4138	4163	7716	7716					0.07434453822543219
DLSERVASLK	10	Unmodified	_DLSERVASLK_					0	0	0			REV__nc|ENSG00000140993|Q6NT04-2|TIGD7	REV__nc|ENSG00000140993|Q6NT04-2|TIGD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3147583007812	2	559.31422	1116.61389	-0.10224	-5.7185E-05	0.24446	0.00013673	0.14222	7.9547E-05	559.3144897001193	33.467	0.2784	33.467	33.326	33.605	0					15	6	3	0	0	0	0.54861	1	12841	12841		40.058	13.365	1	318640	+		7558	15097	4139	4164	7717	7717					0.06024495672136254
DLSILGLIAG	10	Unmodified	_DLSILGLIAG_					0	0	0			REV__ENSG00000221970|ENST00000641044|OR2A1	REV__ENSG00000221970|ENST00000641044|OR2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.29254150390625	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.086	1	34.086	33.586	34.586	0								0	0	0	0.28441	1	11126	11126		53.351	5.6941	1		+		7559	17551	4140	4165	7718	7718					0.08343511245811897
DLSILGLIAG	10	Unmodified	_DLSILGLIAG_					0	0	0			REV__ENSG00000221970|ENST00000641044|OR2A1	REV__ENSG00000221970|ENST00000641044|OR2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2926025390625	2	486.292225	970.569897	0.64299	0.00031268	-0.91806	-0.00044645	-0.27507	-0.00013376	486.29177533782206	34.651	0.8251	34.651	34.044	34.869	0					42	21	4	0	0	0	0.011223	1	13237	13237		138.24	36.642	1	753470	+		7560	17551	4140	4165	7719	7719					0.08343511245811897
DLSILGLIAG	10	Unmodified	_DLSILGLIAG_					0	0	0			REV__ENSG00000221970|ENST00000641044|OR2A1	REV__ENSG00000221970|ENST00000641044|OR2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2911682128906	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.954	1	33.954	33.454	34.454	0								0	0	0	0.33119	1	11973	11973		45.952	3.5558	1		+		7561	17551	4140	4165	7720	7720					0.08343511245811897
DLSKERFLR	9	Unmodified	_DLSKERFLR_					0	0	0			REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	582.3301391601562	2	582.330205	1162.64586	0.56068	0.0003265	0.32621	0.00018996	0.88689	0.00051646	582.3303248394179	25.304	0.34679	25.304	25.214	25.56	0					30	12	4	0	0	0	0.45358	1	7585	7585		37.159	0.71236	1	1220100	+		7562	14168	4141	4166	7721	7721					0.07103908145927562
DLSKERFLR	9	Unmodified	_DLSKERFLR_					0	0	0			REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.3306274414062	2	582.330205	1162.64586	-0.0088184	-5.1352E-06	0.18844	0.00010974	0.17962	0.0001046	582.3302994841134	25.581	0.43307	25.581	25.482	25.916	0					27	8	5	0	0	0	0.20551	1	8748	8748		60.972	4.2509	1	9415100	+		7563	14168	4141	4166	7722	7722					0.07103908145927562
DLSKERFLR	9	Unmodified	_DLSKERFLR_					0	0	0			REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.330078125	2	582.330205	1162.64586	-0.033278	-1.9379E-05	0.14144	8.2363E-05	0.10816	6.2984E-05	582.3304341116539	25.343	0.26122	25.343	25.27	25.531	0					17	9	3	0	0	0	0.39215	1	7862	7862		42.396	3.1433	1	691250	+		7564	14168	4141	4166	7723	7723					0.07103908145927562
DLSKLTKNK	9	Unmodified	_DLSKLTKNK_					0	0	0			REV__NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	REV__NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7466430664062	2	523.813856	1045.61316	1.464	0.00076686	-0.89415	-0.00046837	0.56985	0.00029849	523.8133526359198	19.302	0.19097	19.302	19.222	19.413	0					15	5	4	0	0	0	0.55379	1	5009	5009		26.693	0	1	1649400	+		7565	16787	4142	4167	7724	7724					0.0921770102308983
DLSPRCLILRN	11	Unmodified	_DLSPRCLILRN_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	650.3681640625	2	650.363721	1298.71289	2.0768	0.0013507	2.9975	0.0019494	5.0743	0.0033001	650.366383017284	41.081	0.10184	41.081	41.034	41.136	0					8	4	2	0	0	0	0.33926	1	16162	16162		58.23	0	1	62769			7566	5191	4143	4168	7725	7725					0.0754819536539344
DLSQIPYINLV	11	Unmodified	_DLSQIPYINLV_					0	0	0		nc|ENSG00000148459|Q5T2R2-2|PDSS1;PDSS1|p.T333Lfs*14|1|0.41|ENSG00000148459|chr10:26735548-26735548|C/-|frameshift_variant;nc|ENSG00000148459|Q5T2R2-3|PDSS1;ENSG00000148459|ENST00000376215|PDSS1	nc|ENSG00000148459|Q5T2R2-2|PDSS1	nc|ENSG00000148459|Q5T2R2-2|PDSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	637.8510131835938	2	637.853178	1273.6918	0.8409	0.00053637	-3.9164	-0.0024981	-3.0755	-0.0019617	637.8506299058722	25.7	0.13231	25.7	25.612	25.744	0					6	3	2	0	0	0	0.44025	1	8824	8824		39.253	0	1	161870			7567	4833	4144	4169	7726	7726					0.06590508537510686
DLSSLKHSY	9	Unmodified	_DLSSLKHSY_					0	0	0		BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2667846679688	2	525.266739	1048.51892	0.58825	0.00030899	-0.28208	-0.00014816	0.30618	0.00016082	525.266546232988	24.781	0.23581	24.781	24.677	24.913	0					13	8	2	0	0	0	0.53083	1	7677	7677		29.15	29.15	1	283030			7568	326	4145	4170	7727	7727					-0.00339437799038933
DLSVARPR	8	Unmodified	_DLSVARPR_					0	0	0			REV__ENST00000599938.5_1_19:8942000-8942791:-|nuORF	REV__ENST00000599938.5_1_19:8942000-8942791:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.26446533203125	2	457.264333	912.514114	-0.43499	-0.0001989	1.0504	0.0004803	0.6154	0.0002814	457.2646718735008	47.337	0.91858	47.337	47.131	48.049	0					60	48	2	0	0	0	0.67394	1	18870	18870		37.159	6.6555	1	78421	+		7569	20591	4146	4171	7728	7728					0.05435722848858404
DLSYCLRR	8	Unmodified	_DLSYCLRR_					0	0	0		PAN3|p.P517S|1|0.24|ENSG00000152520|chr13:28266852-28266852|C/T|missense_variant	PAN3|p.P517S|1|0.24|ENSG00000152520|chr13:28266852-28266852|C/T|missense_variant	PAN3|p.P517S|1|0.24|ENSG00000152520|chr13:28266852-28266852|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2539672851562	2	513.263476	1024.5124	-0.4664	-0.00023939	2.1138	0.0010849	1.6474	0.00084554	513.2647990154073	14.821	0.46294	14.821	14.764	15.227	0					12	9	2	0	0	0	0.75243	1	4008	4008		26.796	0	1	169470			7570	11894	4147	4172	7729	7729					0.0011234576857077627
DLTKHQTY	8	Unmodified	_DLTKHQTY_					0	0	0		ENSG00000132698|ENST00000361084|RAB25;ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENSG00000132698|ENST00000361084|RAB25	ENSG00000132698|ENST00000361084|RAB25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.25335693359375	2	503.253631	1004.49271	1.0025	0.00050453	-1.9997	-0.0010063	-0.99712	-0.0005018	503.2527527561261	22.558	0.20941	22.558	22.451	22.66	0					11	4	3	0	0	0	0.58597	1	7667	7667		51.335	5.3632	1	1097100			7571	3810	4148	4173	7730	7730					-0.009357069705401955
DLTKHQTY	8	Unmodified	_DLTKHQTY_					0	0	0		ENSG00000132698|ENST00000361084|RAB25;ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENSG00000132698|ENST00000361084|RAB25	ENSG00000132698|ENST00000361084|RAB25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2535400390625	2	503.253631	1004.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.595	1	22.595	22.095	23.095	0								0	0	0	1.7419	1	7538	7538		60.972	9.6365	1				7572	3810	4148	4173	7731	7731					-0.009357069705401955
DLTKVSVL	8	Unmodified	_DLTKVSVL_					0	0	0		ENST00000215906.5_1_22:26839892-26840330:+|nuORF	ENST00000215906.5_1_22:26839892-26840330:+|nuORF	ENST00000215906.5_1_22:26839892-26840330:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.76580810546875	2	437.765843	873.517133	-0.39906	-0.00017469	0.14083	6.1653E-05	-0.25822	-0.00011304	437.76588575292794	29.675	0.11775	29.675	29.616	29.734	0					6	2	3	0	0	0	0.49216	1	11028	11028		60.972	2.19	1	78928			7573	8155	4149	4174	7732	7732					0.0753155318300287
DLTQVPEPR	9	Unmodified	_DLTQVPEPR_					0	0	0			REV__ENSG00000123154|ENST00000418543|WDR83	REV__ENSG00000123154|ENST00000418543|WDR83	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	352.1890869140625	3	352.189101	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.136	1	15.136	14.636	15.636	0								0	0	0	0.36609	1	3234	3234		16.007	0	1		+		7574	14354	4150	4175	7733	7733					0.02084251092287559
DLTRFFEY	8	Unmodified	_DLTRFFEY_					0	0	0		ENST00000304060.9_1_19:11944623-11944695:+|nuORF	ENST00000304060.9_1_19:11944623-11944695:+|nuORF	ENST00000304060.9_1_19:11944623-11944695:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7640991210938	2	545.763832	1089.51311	1.9395	0.0010585	-1.151	-0.00062817	0.78847	0.00043032	545.7632959869931	36.371	0.41596	36.371	36.265	36.681	0					11	8	2	0	0	0	0.58597	1	14143	14143		51.335	8.4712	1	531050			7575	8510	4151	4176	7734	7734					-0.02806536310708907
DLVQYVQHRH	10	Unmodified	_DLVQYVQHRH_					0	0	0			REV__ENST00000541717.4_2_9:36651834-36665384:+|nuORF	REV__ENST00000541717.4_2_9:36651834-36665384:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.2274169921875	3	432.226549	1293.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.364	1	17.364	16.864	17.864	0								0	0	0	0.4201	1	4313	4313		23.523	0.94304	1		+		7576	20139	4152	4177	7735	7735					0.022735248891194715
DLVVLDTSNS	10	Unmodified	_DLVVLDTSNS_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.771484375	2	531.769311	1061.52407	1.7132	0.00091103	1.4448	0.0007683	3.158	0.0016793	531.7702434836203	40.443	0.64787	40.443	40.295	40.943	0					22	12	4	0	0	0	0.23612	1	16068	16068		75.043	22.107	1	657240			7577	11686	4153	4178	7736	7736					-0.004231787271010035
DLWGAKNR	8	Unmodified	_DLWGAKNR_					0	0	0			REV__ENSG00000116688|ENST00000235329|MFN2	REV__ENSG00000116688|ENST00000235329|MFN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2578125	2	480.256508	958.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.451	1	15.451	14.951	15.951	0								0	0	0	1.7419	1	4076	4076		30.504	7.4612	1		+		7578	14157	4154	4179	7737	7737					0.017554363318026844
DLYAYSTNVI	10	Unmodified	_DLYAYSTNVI_					0	0	0		tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.2914428710938	2	579.787504	1157.56045	1.5873	0.00092031	1.1036	0.00063984	2.6909	0.0015601	579.7880021454517	41.51	0.27037	41.51	41.391	41.661	0					17	11	2	0	0	0	0.47859	1	16302	16302		47.657	0	1	185240			7579	22695	4155	4180	7738	7738					-0.012023018303807476
DMARVCNTTTD	11	Unmodified	_DMARVCNTTTD_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.7608642578125	2	613.760637	1225.50672	0.97845	0.00060053	-0.53627	-0.00032914	0.44217	0.00027139	613.7604213626335	37.243	1.1931	37.243	36.172	37.365	0					76	35	3	0	0	0	0.49805	1	14528	14528		44.377	1.5129	1	385280			7580	3298	4156	4181	7739	7739					-0.09701165596061401
DMDPRKALL	9	Unmodified	_DMDPRKALL_					0	0	0		ENSG00000198883|ENST00000535214|PNMA5;PNMA5|p.V73Qfs*24|1|0.04|ENSG00000198883|chrX:152991381-152991382|AC/-|frameshift_variant	ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7858276367188	2	529.786784	1057.55902	-1.1879	-0.00062934	1.2323	0.00065284	0.044344	2.3493E-05	529.7875998908677	39.95	0.5716	39.95	39.796	40.367	0					41	30	2	0	0	0	0.45358	1	14224	14224		37.159	0.13063	1	137770			7581	7632	4157	4182	7740	7740					0.03253785599872572
DMKQFKNL	8	Unmodified	_DMKQFKNL_					0	0	0		CENPN|p.S107L|1|0.35|ENSG00000166451|chr16:81017800-81017800|C/T|missense_variant	CENPN|p.S107L|1|0.35|ENSG00000166451|chr16:81017800-81017800|C/T|missense_variant	CENPN|p.S107L|1|0.35|ENSG00000166451|chr16:81017800-81017800|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2679443359375	2	512.268227	1022.5219	0.0056042	2.8709E-06	-0.32848	-0.00016827	-0.32287	-0.0001654	512.2681201366763	41.659	0.42972	41.659	41.555	41.984	0					47	21	3	0	0	0	0.59773	1	15807	15807		49.442	1.5259	1	304920			7582	474	4158	4183	7741	7741					0.011541140541226014
DMMDAISKR	9	2 Oxidation (M)	_DM(Oxidation (M))M(Oxidation (M))DAISKR_		DM(1)M(1)DAISKR		DM(64)M(64)DAISKR	0	0	2			REV__tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1	REV__tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.75048828125	2	549.749541	1097.48453	1.824	0.0010027	-0.87235	-0.00047958	0.9516	0.00052314	549.7490888671589	35.97	0.51232	35.97	35.817	36.329	0					34	10	5	0	0	0	0.17854	1	13901	13901		64.207	16.55	1	4962700	+		7583	22174	4159	4184	7742	7742		803;804			-0.060313452738000706
DMRPLYGM	8	Unmodified	_DMRPLYGM_					0	0	0			REV__ENST00000469133.1_1_7:24749857-24749896:-|nuORF	REV__ENST00000469133.1_1_7:24749857-24749896:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.728271484375	2	491.72788	981.441208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.3	1	20.3	19.8	20.8	0								0	0	0	1.7419	1	5682	5682		37.028	3.5129	1		+		7584	19449	4160	4185	7743	7743					-0.05025490260436527
DMSPGLTDSTA	11	Oxidation (M)	_DM(Oxidation (M))SPGLTDSTA_		DM(1)SPGLTDSTA		DM(70)SPGLTDSTA	0	0	1		RPUSD2|p.L435M|1|0.24|ENSG00000166133|chr15:40573926-40573926|C/A|missense_variant	RPUSD2|p.L435M|1|0.24|ENSG00000166133|chr15:40573926-40573926|C/A|missense_variant	RPUSD2|p.L435M|1|0.24|ENSG00000166133|chr15:40573926-40573926|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.735595703125	2	555.734611	1109.45467	-0.091947	-5.1098E-05	1.9389	0.0010775	1.8469	0.0010264	555.7357552688384	36.239	0.21913	36.239	36.13	36.35	0					10	6	2	0	0	0	0.23884	1	14102	14102		69.628	8.6557	1	371950			7585	22360	4161	4186	7744	7744		809			-0.09568005738174179
DMTIALHM	8	Unmodified	_DMTIALHM_					0	0	0			REV__ENST00000477542.5_1_3:48415047-48423401:+|nuORF	REV__ENST00000477542.5_1_3:48415047-48423401:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.222412109375	2	466.222431	930.430309	0.65772	0.00030665	-0.32169	-0.00014998	0.33604	0.00015667	466.22192835056114	40.427	0.80544	40.427	39.912	40.718	0					33	18	2	0	0	0	0.57802	1	15963	15963		52.299	9.903	1	89020	+		7586	15950	4162	4187	7745	7745					-0.03768892634730037
DNCLALRLQ	9	Carbamidomethyl (C)	_DNC(Carbamidomethyl (C))LALRLQ_	DNC(1)LALRLQ		DNC(72)LALRLQ		0	1	0		nc|ENSG00000188487|Q1MX18-3|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7904663085938	2	551.787315	1101.56008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.901	1	24.901	24.401	25.401	0								0	0	0	0.099216	1	7419	7419		71.877	13.648	1				7587	11697	4163	4188	7746	7746	462				0.01335999968773649
DNDFKILQ	8	Unmodified	_DNDFKILQ_					0	0	0		ENST00000412878.2_1_10:53079965-53080385:+|nuORF	ENST00000412878.2_1_10:53079965-53080385:+|nuORF	ENST00000412878.2_1_10:53079965-53080385:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.75738525390625	2	496.756007	991.497461	2.8885	0.0014349	0.041254	2.0493E-05	2.9297	0.0014554	496.75627878575045	34.808	1.1132	34.808	34.506	35.62	0					58	22	6	0	0	0	0.2451	1	13363	13363		110.12	27.879	1	18760000			7588	9325	4164	4189	7747	7747					0.001371771722460835
DNELRICAR	9	Unmodified	_DNELRICAR_					0	0	0		ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2764282226562	2	545.277115	1088.53968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.301	1	39.301	38.801	39.801	0								0	0	0	0.28666	1	14960	14960		37.812	3.639	1				7589	2111	4165	4190	7748	7748					-0.0010517069104025722
DNFNFIVI	8	Unmodified	_DNFNFIVI_					0	0	0			REV__tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1	REV__tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2543029785156	2	491.255643	980.496732	-0.7298	-0.00035852	1.5159	0.00074469	0.7861	0.00038618	491.2564174789969	34.679	0.13449	34.679	34.552	34.686	0					5	3	2	0	0	0	0.5676	1	13375	13375		53.351	3.3269	1	300840	+		7590	22197	4166	4191	7749	7749					0.005703825231762494
DNKKYYKYSKE	11	Unmodified	_DNKKYYKYSKE_					0	0	0		nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	733.368408203125	2	733.369724	1464.72489	-1.6555	-0.0012141	-0.73677	-0.00054033	-2.3922	-0.0017544	733.3693418755256	30.34	0.15156	30.34	30.249	30.4	0					10	3	4	0	0	0	0.60545	1	11320	11320		33.922	9.4024	1	321380			7591	4053	4167	4192	7750	7750					0.011120905895495525
DNKLSTDNPF	10	Unmodified	_DNKLSTDNPF_					0	0	0			REV__nc|ENSG00000198363|Q12797-10|ASPH	REV__nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.7742919921875	2	575.772385	1149.53022	3.3112	0.0019065	0.36165	0.00020823	3.6729	0.0021147	575.7726127470659	38.103	0.24531	38.103	38.005	38.251	0					14	5	3	0	0	0	0.57211	1	14944	14944		37.508	3.3356	1	628000	+		7592	17393	4168	4193	7751	7751					-0.038566604955803996
DNKPIKVL	8	Unmodified	_DNKPIKVL_					0	0	0			REV__ENST00000413990.1_1_1:158146977-158147493:-|nuORF	REV__ENST00000413990.1_1_1:158146977-158147493:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7868347167969	2	463.78711	925.559667	0.098714	4.5782E-05	-0.52946	-0.00024555	-0.43074	-0.00019977	463.78683474850556	22.815	0.13662	22.815	22.754	22.89	0					6	4	2	0	0	0	0.64144	1	6505	6505		42.396	0	1	60400	+		7593	12791	4169	4194	7752	7752					0.09390948311227021
DNLLFEETNQD	11	Unmodified	_DNLLFEETNQD_					0	0	0			REV__nc|ENSG00000106034|A4D0V7-2|CPED1	REV__nc|ENSG00000106034|A4D0V7-2|CPED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	669.2952270507812	2	669.296421	1336.57829	-2.3301	-0.0015595	0.34324	0.00022973	-1.9868	-0.0013298	669.2966070130954	17.819	0.44548	17.819	17.696	18.142	0					22	10	5	0	0	0	0.15663	1	5087	5087		79.489	79.489	1	2368900	+		7594	12628	4170	4195	7753	7753					-0.0765363136617907
DNNEVRFTVGL	11	Unmodified	_DNNEVRFTVGL_					0	0	0			REV__ENSG00000105926|ENST00000222644|PALS2	REV__ENSG00000105926|ENST00000222644|PALS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	632.3209838867188	2	632.320034	1262.62551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.362	1	21.362	20.862	21.862	0								0	0	0	0.42696	1	6120	6120		21.686	8.2317	1		+		7595	13803	4171	4196	7754	7754					0.0047069269546682335
DNPKVSVI	8	Unmodified	_DNPKVSVI_					0	0	0		LMTK2|p.E678V|1|0.04|ENSG00000164715|chr7:98192498-98192498|A/T|missense_variant	LMTK2|p.E678V|1|0.04|ENSG00000164715|chr7:98192498-98192498|A/T|missense_variant	LMTK2|p.E678V|1|0.04|ENSG00000164715|chr7:98192498-98192498|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.2480163574219	2	436.247818	870.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.826	1	20.826	20.326	21.326	0								0	0	0	1.7419	1	5929	5929		38.806	3.1879	1				7596	11319	4172	4197	7755	7755					0.04066096006135922
DNPPRFPQK	9	Unmodified	_DNPPRFPQK_					0	0	0		CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;ENSG00000149654|ENST00000537909|CDH22;CDH18|p.F431Sfs*39|1|0.25|ENSG00000145526|chr5:19543967-19543967|A/-|frameshift_variant;CDH18|p.I568Lfs*2|1|0.13|ENSG00000145526|chr5:19483482-19483482|G/-|frameshift_variant;nc|ENSG00000145526|Q13634-2|CDH18;ENSG00000145526|ENST00000382275|CDH18;ENSG00000101542|ENST00000262717|CDH20	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;ENSG00000101542|ENST00000262717|CDH20	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7901611328125	2	549.788173	1097.56179	3.7642	0.0020695	-0.17053	-9.3753E-05	3.5937	0.0019758	549.7880632007362	11.571	0.27402	11.571	11.493	11.767	0					22	11	4	0	0	0	0.41113	1	2273	2273		40.778	1.5253	1	1908300			7597	451;2128	4173	4198	7756	7756					0.016913770490191382
DNRTSWQLI	9	Unmodified	_DNRTSWQLI_					0	0	0		ENST00000477091.5_1_21:35445925-35497723:+|nuORF	ENST00000477091.5_1_21:35445925-35497723:+|nuORF	ENST00000477091.5_1_21:35445925-35497723:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.7911376953125	2	566.790912	1131.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.221	1	17.221	16.721	17.721	0								0	0	0	0.35899	1	4248	4248		23.042	3.0457	1				7598	9917	4174	4199	7757	7757					0.006750558408384677
DNSEEEERV	9	Unmodified	_DNSEEEERV_					0	0	0		ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant;ENSG00000162618|ENST00000370742|ADGRL4	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7344360351562	2	553.733457	1105.45236	1.8193	0.0010074	-0.037274	-2.064E-05	1.782	0.00098678	553.7334284778201	15.076	0.19381	15.076	14.98	15.174	0					7	4	2	0	0	0	0.47473	1	3828	3828		35.152	0.97948	1	814670			7599	81	4175	4200	7758	7758					-0.09614718151601664
DNSESLKVL	9	Unmodified	_DNSESLKVL_					0	0	0		ENSG00000163512|ENST00000479665|AZI2;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;nc|ENSG00000163512|Q9H6S1-4|AZI2;ENST00000463512.5_1_3:28368296-28390095:-|nuORF	ENSG00000163512|ENST00000479665|AZI2	ENSG00000163512|ENST00000479665|AZI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7664489746094	2	502.766571	1003.51859	-2.0649	-0.0010382	2.837	0.0014263	0.77211	0.00038819	502.7675816234572	36.832	0.18066	36.832	36.741	36.921	0					15	8	2	0	0	0	0.12834	1	13169	13169		72.879	5.3856	1	104740			7600	5567	4176	4201	7759	7759					0.016971424811004
DNSRMSCQ	8	Unmodified	_DNSRMSCQ_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.68414306640625	2	470.684201	939.35385	0.60201	0.00028336	-0.95516	-0.00044958	-0.35314	-0.00016622	470.6838838897849	39.33	0.70245	39.33	39.19	39.893	0					65	24	4	0	0	0	0.78142	1	15586	15586		23.042	0	1	2835900			7601	2199	4177	4202	7760	7760					-0.11825316201998248
DNSTMGYMMAK	11	Unmodified	_DNSTMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	624.755615234375	2	624.756509	1247.49846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.931	1	34.931	34.431	35.431	0								0	0	0	0.45674	1	12402	12402		24.232	3.2849	1				7602	1916	4178	4203	7761	7761					-0.11538435837042016
DNVHHSQLI	9	Unmodified	_DNVHHSQLI_					0	0	0			REV__ENST00000542362.1_1_12:133218156-133218763:-|nuORF	REV__ENST00000542362.1_1_12:133218156-133218763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7713623046875	2	531.76998	1061.52541	1.7177	0.00091344	1.8392	0.00097802	3.5569	0.0018915	531.7703542552656	40.493	0.42087	40.493	40.295	40.716	0					46	17	4	0	0	0	0.1424	1	15963	15963		69.628	12.907	1	422390	+		7603	16685	4179	4204	7762	7762					-0.0028949984766768466
DNWSVTNL	8	Unmodified	_DNWSVTNL_					0	0	0		sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.724365234375	2	474.724707	947.43486	-0.12052	-5.7212E-05	-0.4403	-0.00020902	-0.56082	-0.00026623	474.7246290210938	27.674	0.21242	27.674	27.569	27.781	0					7	4	2	0	0	0	0.51384	1	10062	10062		58.782	0	1	152960			7604	22436	4180	4205	7763	7763					-0.04095968895956048
DNWSVTNL	8	Unmodified	_DNWSVTNL_					0	0	0		sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7243347167969	2	474.724707	947.43486	-0.60227	-0.00028591	-0.074194	-3.5221E-05	-0.67646	-0.00032113	474.72459062205326	27.62	0.27029	27.62	27.51	27.78	0					10	5	3	0	0	0	0.5676	1	9919	9919		53.351	0	1	337960			7605	22436	4180	4205	7764	7764					-0.04095968895956048
DNYNVQKRV	9	Unmodified	_DNYNVQKRV_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.2013244628906	3	379.2	1134.57817	0.23031	8.7332E-05	4.4663	0.0016936	4.6966	0.0017809	379.20113650864573	28.384	0.20797	28.384	28.241	28.449	0					9	4	3	0	0	0	0.35021	1	10409	10409		45.972	4.8922	1	178800	+		7606	16346	4181	4206	7765	7765					0.016264582151279683
DPAHGAQGSDV	11	Unmodified	_DPAHGAQGSDV_					0	0	0		nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2348022460938	2	527.233427	1052.4523	0.28428	0.00014988	2.2	0.0011599	2.4843	0.0013098	527.2344619643113	27.642	0.35912	27.642	27.439	27.798	0					13	7	2	0	0	0	0.42746	1	10026	10026		49.536	5.1589	1	143610			7607	11520	4182	4207	7766	7766					-0.07182673360944136
DPAKCRYALG	10	Unmodified	_DPAKCRYALG_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;DDR1|p.M37I|1|0.29|ENSG00000204580|chr6:30888933-30888933|G/A|missense_variant;ENST00000504152.5_1_6:30856506-30856812:+|nuORF;nc|ENSG00000204580|Q08345-4|DDR1;ENST00000431373.1_1_6:30853540-30859007:+|nuORF;DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant;DDR1|p.P483Rfs*170|1|0.29|ENSG00000204580|chr6:30894602-30894602|C/-|frameshift_variant;DDR1|p.G583Afs*70|1|0.31|ENSG00000204580|chr6:30896740-30896740|G/-|frameshift_variant	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.27734375	2	547.276583	1092.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.341	1	15.341	14.841	15.841	0								0	0	0	0.4201	1	3479	3479		21.96	0	1				7608	7710	4183	4208	7767	7767					-0.003953850599373254
DPCISSLKK	9	Unmodified	_DPCISSLKK_					0	0	0			REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF	REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.84893798828125	3	330.847799	989.521567	1.6606	0.0005494	1.3951	0.00046157	3.0557	0.001011	330.84852580887645	12.839	0.1115	12.839	12.773	12.885	0					4	2	2	0	0	0	0.5879	1	2843	2843		23.523	8.1896	1	42963	+		7609	19469	4184	4209	7768	7768					0.02638694334268621
DPDATSLKY	9	Unmodified	_DPDATSLKY_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.24530029296875	2	505.245472	1008.47639	0.80374	0.00040609	-0.52989	-0.00026772	0.27386	0.00013837	505.24520930312934	31.693	0.45923	31.693	31.49	31.949	0					26	11	3	0	0	0	0.0080613	1	11560	11560		145.16	57.401	1	344980			7610	3740	4185	4210	7769	7769					-0.027508329272677656
DPDATSLKY	9	Unmodified	_DPDATSLKY_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2471008300781	2	505.245472	1008.47639	-0.7774	-0.00039278	1.1523	0.00058218	0.37486	0.0001894	505.2460458120686	31.526	0.39145	31.526	31.347	31.739	0					23	15	2	0	0	0	0.38666	1	10400	10400		42.864	2.0861	1	113840			7611	3740	4185	4210	7770	7770					-0.027508329272677656
DPDATSLKY	9	Unmodified	_DPDATSLKY_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2451477050781	2	505.245472	1008.47639	1.0574	0.00053424	-0.85447	-0.00043172	0.20293	0.00010253	505.2449317965927	31.715	0.53465	31.715	31.513	32.048	0					28	11	4	0	0	0	0.037924	1	11972	11972		101.25	10.883	1	518960			7612	3740	4185	4210	7771	7771					-0.027508329272677656
DPDATSLKY	9	Unmodified	_DPDATSLKY_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.24554443359375	2	505.245472	1008.47639	0.11147	5.6319E-05	-0.21687	-0.00010957	-0.1054	-5.3254E-05	505.2454747514628	31.452	0.41583	31.452	31.303	31.718	0					15	10	2	0	0	0	0.1424	1	10835	10835		69.628	3.8245	1	89492			7613	3740	4185	4210	7772	7772					-0.027508329272677656
DPDATSLKY	9	Unmodified	_DPDATSLKY_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2452697753906	2	505.245472	1008.47639	1.2309	0.00062191	-1.366	-0.00069016	-0.13508	-6.825E-05	505.2446948070638	31.673	0.51471	31.673	31.454	31.969	0					27	10	4	0	0	0	0.020674	1	11851	11851		120.87	52.384	1	535940			7614	3740	4185	4210	7773	7773					-0.027508329272677656
DPDKQQSV	8	Unmodified	_DPDKQQSV_					0	0	0			REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7219543457031	2	458.722164	915.429775	-0.41477	-0.00019027	-0.29919	-0.00013724	-0.71396	-0.00032751	458.7220697984528	17.467	0.14612	17.467	17.378	17.524	0					9	5	2	0	0	0	0.61938	1	4156	4156		45.952	1.8352	1	74900	+		7615	13010	4186	4211	7774	7774					-0.031322727585575194
DPDQEEHGAPL	11	Unmodified	_DPDQEEHGAPL_					0	0	0			REV__ENST00000441343.5_1_19:42471885-42472978:-|nuORF	REV__ENST00000441343.5_1_19:42471885-42472978:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.2672729492188	2	604.264924	1206.5153	3.0261	0.0018286	0.52562	0.00031761	3.5518	0.0021462	604.2651599319026	31.445	1.564	31.445	31.093	32.657	0					77	31	5	0	0	0	0.30836	1	11696	11696		61.691	15.739	1	8483900	+		7616	19238	4187	4212	7775	7775					-0.07970152363554917
DPDVWLPIL	9	Unmodified	_DPDVWLPIL_					0	0	0			REV__RTTN|p.R1378P|1|0.15|ENSG00000176225|chr18:70092120-70092120|C/G|missense_variant	REV__RTTN|p.R1378P|1|0.15|ENSG00000176225|chr18:70092120-70092120|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2928466796875	2	534.292225	1066.5699	1.772	0.00094679	-1.1611	-0.00062034	0.61098	0.00032644	534.2917855519621	37.463	0.20773	37.463	37.36	37.567	0					14	6	3	0	0	0	0.41113	1	14662	14662		33.516	5.6333	1	268520	+		7617	21479	4188	4213	7776	7776					0.039275112458199146
DPEAGWPV	8	Unmodified	_DPEAGWPV_					0	0	0			REV__ETV2|p.R314Efs*14|1|0.33|ENSG00000105672|chr19:35644757-35644757|G/-|frameshift_variant	REV__ETV2|p.R314Efs*14|1|0.33|ENSG00000105672|chr19:35644757-35644757|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.7033386230469	2	435.703243	869.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.089	1	32.089	31.589	32.589	0								0	0	0	1.7419	1	10687	10687		13.775	0.81615	1		+		7618	13789	4189	4214	7777	7777					-0.04798738953377324
DPEGSRITY	9	Unmodified	_DPEGSRITY_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2484130859375	2	519.248546	1036.48254	1.4278	0.0007414	-0.65281	-0.00033897	0.77503	0.00040243	519.2480494577891	28.627	0.22839	28.627	28.536	28.764	0					23	10	3	0	0	0	0.10506	1	8943	8943		78.264	18.146	1	202390			7619	3388	4190	4215	7778	7778					-0.034243146957578574
DPEGSRITY	9	Unmodified	_DPEGSRITY_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2498168945312	2	519.248546	1036.48254	2.01	0.0010437	-0.75353	-0.00039127	1.2565	0.00065244	519.2483052528842	28.865	0.29332	28.865	28.78	29.073	0					10	7	2	0	0	0	0.022525	1	10258	10258		117.81	27.441	1	135500			7620	3388	4190	4215	7779	7779					-0.034243146957578574
DPEGSRITY	9	Unmodified	_DPEGSRITY_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2489013671875	2	519.248546	1036.48254	1.1261	0.00058473	-0.77087	-0.00040027	0.35523	0.00018446	519.2480624835484	28.915	0.40095	28.915	28.778	29.179	0					22	8	4	0	0	0	0.011389	1	10624	10624		138.06	36.462	1	1271100			7621	3388	4190	4215	7780	7780					-0.034243146957578574
DPEGSRITY	9	Unmodified	_DPEGSRITY_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2484130859375	2	519.248546	1036.48254	1.3241	0.00068756	-0.45079	-0.00023407	0.87336	0.00045349	519.2483590626263	28.69	0.25274	28.69	28.571	28.823	0					14	6	3	0	0	0	0.13726	1	9533	9533		70.816	10.698	1	201280			7622	3388	4190	4215	7781	7781					-0.034243146957578574
DPEGSRITY	9	Unmodified	_DPEGSRITY_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2486572265625	2	519.248546	1036.48254	0.97611	0.00050684	-0.52914	-0.00027476	0.44696	0.00023209	519.2481716647698	28.679	0.20384	28.679	28.56	28.764	0					9	5	2	0	0	0	0.047855	1	9547	9547		96.034	33.055	1	174270			7623	3388	4190	4215	7782	7782					-0.034243146957578574
DPEGSRITY	9	Unmodified	_DPEGSRITY_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.249267578125	2	519.248546	1036.48254	0.28989	0.00015053	0.38288	0.00019881	0.67277	0.00034933	519.2486998353306	28.818	0.46628	28.818	28.707	29.174	0					22	9	4	0	0	0	0.0067848	1	10470	10470		150.36	48.761	1	2110400			7624	3388	4190	4215	7783	7783					-0.034243146957578574
DPEGSRITY	9	Unmodified	_DPEGSRITY_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2484130859375	2	519.248546	1036.48254	1.6033	0.00083249	-0.51299	-0.00026637	1.0903	0.00056612	519.2482164989891	28.852	0.31775	28.852	28.691	29.009	0					13	6	3	0	0	0	0.017421	1	10490	10490		126.24	41.327	1	931600			7625	3388	4190	4215	7784	7784					-0.034243146957578574
DPEKEKKAQ	9	Unmodified	_DPEKEKKAQ_					0	0	0			REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.1930847167969	3	358.192623	1071.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.228	1	15.228	14.728	15.728	0								0	0	0	0.35899	1	3369	3369		23.523	6.1577	1		+		7626	12996	4191	4216	7785	7785					0.02312233746692982
DPFRDLHSL	9	Unmodified	_DPFRDLHSL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.1892395019531	3	367.189212	1098.54581	0.966	0.00035471	-0.88511	-0.000325	0.080894	2.9704E-05	367.1888462930798	40.18	0.3515	40.18	39.957	40.308	0					18	8	3	0	0	0	0.45358	1	15890	15890		44.377	7.9304	1	218450			7627	4119	4192	4217	7786	7786					0.0004767081213685742
DPFSFAGPEI	10	Unmodified	_DPFSFAGPEI_					0	0	0		ENST00000319092.5_1_1:117075690-117076050:-|nuORF	ENST00000319092.5_1_1:117075690-117076050:-|nuORF	ENST00000319092.5_1_1:117075690-117076050:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.8153076171875	2	540.25584	1078.49713	1.0303	0.00055663	1.1343	0.00061279	2.1646	0.0011694	540.2569693637035	22.296	0.14402	22.296	22.246	22.39	0					5	3	2	0	0	0	0.46215	1	6609	6609		49.442	3.4693	1	26850			7628	8606	4193	4218	7787	7787					-0.03898242547620612
DPGLGLRL	8	Unmodified	_DPGLGLRL_					0	0	0		nc|ENSG00000211753|A0A5B6|TRBV28	nc|ENSG00000211753|A0A5B6|TRBV28	nc|ENSG00000211753|A0A5B6|TRBV28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.74981689453125	2	420.750527	839.486502	-0.038207	-1.6076E-05	-0.51128	-0.00021512	-0.54948	-0.0002312	420.75022444058396	21.971	0.36584	21.971	21.719	22.085	0					13	8	2	0	0	0	0.59411	1	6446	6446		50.025	2.1089	1	93224			7629	11740	4194	4219	7788	7788					0.06033819588606093
DPGPQFQSL	9	Unmodified	_DPGPQFQSL_					0	0	0			REV__ENST00000429053.1_1_6:53659035-53659071:-|nuORF	REV__ENST00000429053.1_1_6:53659035-53659071:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7418212890625	2	494.740357	987.46616	-0.43417	-0.0002148	2.563	0.001268	2.1288	0.0010532	494.7417459242127	31.368	0.37413	31.368	31.28	31.654	0					15	9	2	0	0	0	0.17854	1	11419	11419		64.207	3.8036	1	304900	+		7630	19141	4195	4220	7789	7789					-0.028073958618506367
DPHEKMHLA	9	Unmodified	_DPHEKMHLA_					0	0	0			REV__SOX1|p.R108C|1|0.16|ENSG00000182968|chr13:112067980-112067980|C/T|missense_variant	REV__SOX1|p.R108C|1|0.16|ENSG00000182968|chr13:112067980-112067980|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2630004882812	2	539.260933	1076.50731	1.9373	0.0010447	2.0175	0.001088	3.9548	0.0021327	539.2621786463537	40.156	0.27444	40.156	40.048	40.322	0					16	10	2	0	0	0	0.53083	1	15819	15819		29.15	29.15	1	108140	+		7631	16848	4196	4221	7790	7790					-0.02787958094017995
DPHFFTQVF	9	Unmodified	_DPHFFTQVF_					0	0	0		ENSG00000171450|ENST00000302625|CDK5R2	ENSG00000171450|ENST00000302625|CDK5R2	ENSG00000171450|ENST00000302625|CDK5R2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2735595703125	2	569.271824	1136.5291	1.6349	0.00093071	2.17	0.0012353	3.8049	0.002166	569.2727700831931	44.872	0.13213	44.872	44.815	44.947	0					9	5	2	0	0	0	0.27249	1	17976	17976		21.96	0	1	70965			7632	6295	4197	4222	7791	7791					-0.0337083007379988
DPHLLHLL	8	Unmodified	_DPHLLHLL_					0	0	0		ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.27880859375	2	479.279452	956.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.017	1	48.017	47.517	48.517	0								0	0	0	1.7419	1	15999	15999		21.702	1.2205	1				7633	8744	4198	4223	7792	7792					0.0643408151404401
DPHMGLFL	8	Unmodified	_DPHMGLFL_					0	0	0			REV__nc|ENSG00000070614|P52848-3|NDST1	REV__nc|ENSG00000070614|P52848-3|NDST1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2320861816406	2	465.231113	928.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.925	1	39.925	39.425	40.425	0								0	0	0	1.7419	1	15718	15718		28.254	3.7503	1		+		7634	13176	4199	4224	7793	7793					-0.019412290374248187
DPHQQIYTF	9	Unmodified	_DPHQQIYTF_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.7730102539062	2	574.772188	1147.52982	-0.211	-0.00012128	0.91218	0.0005243	0.70118	0.00040302	574.7729219870295	40.003	0.29615	40.003	39.901	40.197	0					23	10	3	0	0	0	0.41958	1	15734	15734		40.058	1.3046	1	228290			7635	3920	4200	4225	7794	7794					-0.03804035424786889
DPHSQLYVY	9	Unmodified	_DPHSQLYVY_					0	0	0		ENST00000588559.5_1_19:55705613-55720813:-|nuORF;nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.26708984375	2	561.266739	1120.51892	1.2768	0.00071661	0.116	6.5109E-05	1.3928	0.00078172	561.2669258034048	37.888	0.11005	37.888	37.82	37.93	0					9	6	2	0	0	0	0.4966	1	12380	12380		32.812	3.6629	1	53064			7636	1635	4201	4226	7795	7795					-0.03651437799044288
DPHTVTVSM	9	Unmodified	_DPHTVTVSM_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;nc|ENSG00000112983|Q9H0E9-3|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.73394775390625	2	493.734217	985.453881	-0.06869	-3.3914E-05	-0.44783	-0.00022111	-0.51652	-0.00025502	493.7340618717124	31.59	0.27482	31.59	31.482	31.757	0					35	12	4	0	0	0	0.071197	1	10145	10145		87.754	16.459	1	378930			7637	321	4202	4227	7796	7796					-0.039427555965289685
DPHTVTVSM	9	Unmodified	_DPHTVTVSM_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;nc|ENSG00000112983|Q9H0E9-3|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7340087890625	2	493.734217	985.453881	-0.47642	-0.00023522	-0.016705	-8.248E-06	-0.49312	-0.00024347	493.7343137663215	31.896	0.41742	31.896	31.764	32.181	0					34	10	4	0	0	0	0.062676	1	11626	11626		90.777	24.973	1	1893600			7638	321	4202	4227	7797	7797					-0.039427555965289685
DPHTVTVSM	9	Unmodified	_DPHTVTVSM_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;nc|ENSG00000112983|Q9H0E9-3|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7347412109375	2	493.734217	985.453881	-0.74887	-0.00036974	0.40076	0.00019787	-0.34811	-0.00017187	493.73454880066004	31.886	0.39016	31.886	31.736	32.126	0					19	8	3	0	0	0	0.087582	1	12035	12035		82.305	18.999	1	955860			7639	321	4202	4227	7798	7798					-0.039427555965289685
DPHTVTVSM	9	Unmodified	_DPHTVTVSM_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;nc|ENSG00000112983|Q9H0E9-3|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.73382568359375	2	493.734217	985.453881	-2.5476	-0.0012578	1.6016	0.00079076	-0.946	-0.00046707	493.735156977123	31.66	0.3142	31.66	31.503	31.817	0					19	8	3	0	0	0	0.1236	1	10901	10901		73.975	8.1716	1	331460			7640	321	4202	4227	7799	7799					-0.039427555965289685
DPHVLLAVA	9	Unmodified	_DPHVLLAVA_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7708740234375	2	467.77146	933.528367	-0.13023	-6.0916E-05	-0.060591	-2.8343E-05	-0.19082	-8.9259E-05	467.7713696556082	33.452	0.70379	33.452	33.187	33.891	0					30	17	3	0	0	0	0.5654	1	12757	12757		25.45	1.2474	1	240560			7641	2095	4203	4228	7800	7800					0.05894375277136987
DPHVRTSFQ	9	Unmodified	_DPHVRTSFQ_					0	0	0			REV__ENSG00000188818|ENST00000283441|ZDHHC11	REV__ENSG00000188818|ENST00000283441|ZDHHC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.769287109375	2	543.76998	1085.52541	0.32307	0.00017568	-1.3155	-0.00071531	-0.99239	-0.00053963	543.7695024578405	34.407	0.20672	34.407	34.323	34.53	0					9	5	3	0	0	0	0.4966	1	13251	13251		32.812	4.5581	1	158870	+		7642	17195	4204	4229	7801	7801					-0.013934998476770488
DPIGGHIHSY	10	Unmodified	_DPIGGHIHSY_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.26513671875	2	548.26453	1094.51451	1.2414	0.00068064	-0.1418	-7.7746E-05	1.0996	0.00060289	548.264639970877	27.142	0.12326	27.142	27.087	27.211	0					6	4	2	0	0	0	0.67098	1	8341	8341		25.574	0.12388	1	46652			7643	4073	4205	4230	7802	7802					-0.028969022219371254
DPIGGHIHSY	10	Unmodified	_DPIGGHIHSY_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2649536132812	2	548.26453	1094.51451	0.48691	0.00026696	0.15142	8.3018E-05	0.63833	0.00034997	548.2646680451799	27.375	0.34346	27.375	27.157	27.501	0					14	8	3	0	0	0	0.097781	1	9565	9565		95.815	61.643	1	299400			7644	4073	4205	4230	7803	7803					-0.028969022219371254
DPIGGHIHSY	10	Unmodified	_DPIGGHIHSY_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2642822265625	2	548.26453	1094.51451	-1.5069	-0.0008262	1.9386	0.0010629	0.43168	0.00023667	548.265443687284	27.205	0.21486	27.205	27.118	27.333	0					8	5	2	0	0	0	0.41335	1	8878	8878		54.776	25.627	1	80158			7645	4073	4205	4230	7804	7804					-0.028969022219371254
DPKPQVSGR	9	Unmodified	_DPKPQVSGR_					0	0	0		LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant;nc|ENSG00000128606|Q8N6Y2-2|LRRC17;LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant;ENSG00000128606|ENST00000339431|LRRC17	LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant	LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.5137634277344	3	328.513807	982.519593	-0.027072	-8.8937E-06	-0.046061	-1.5132E-05	-0.073134	-2.4025E-05	328.5137869198893	21.07	0.17582	21.07	20.944	21.12	0					10	4	3	0	0	0	0.55379	1	6054	6054		33.922	10.399	1	243160			7646	3553	4206	4231	7805	7805					0.02763401640675056
DPKTVRAL	8	Unmodified	_DPKTVRAL_					0	0	0			REV__ENSG00000088053|ENST00000310373|GP6	REV__ENSG00000088053|ENST00000310373|GP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2688293457031	2	450.269084	898.523616	-0.48167	-0.00021688	-0.02625	-1.1819E-05	-0.50792	-0.0002287	450.2690673328822	39.663	0.32701	39.663	39.553	39.88	0					30	13	3	0	0	0	0.28427	1	15088	15088		87.754	21.325	1	657860	+		7647	13388	4207	4232	7806	7806					0.07029491134358068
DPLNTDPK	8	Unmodified	_DPLNTDPK_					0	0	0			REV__NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant	REV__NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2266540527344	2	450.227082	898.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.836	1	20.836	20.336	21.336	0								0	0	0	1.7419	1	5641	5641		21.96	4.5949	1		+		7648	16811	4208	4233	7807	7807					-0.013670847532011976
DPLVRRSA	8	Unmodified	_DPLVRRSA_					0	0	0		ENST00000526183.5_1_8:145703364-145715441:+|nuORF	ENST00000526183.5_1_8:145703364-145715441:+|nuORF	ENST00000526183.5_1_8:145703364-145715441:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2637023925781	2	457.264333	912.514114	0.72159	0.00032996	-0.25762	-0.0001178	0.46397	0.00021216	457.26416022746054	46.056	0.71892	46.056	45.798	46.517	0					72	41	2	0	0	0	0.77246	1	17806	17806		24.203	0	1	136770			7649	10374	4209	4234	7808	7808					0.05435722848858404
DPMAMTQKY	9	Unmodified	_DPMAMTQKY_					0	0	0		ENST00000534765.1_1_11:65835264-65836005:+|nuORF;ENSG00000087365|ENST00000322535|SF3B2	ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENST00000534765.1_1_11:65835264-65836005:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7440795898438	2	542.743728	1083.4729	1.8844	0.0010227	-1.2393	-0.00067262	0.64511	0.00035013	542.7433085944723	32.659	0.29442	32.659	32.503	32.798	0					16	7	3	0	0	0	0.22837	1	12030	12030		58.23	17.452	1	229280			7650	1767	4210	4235	7809	7809					-0.06549542297148037
DPNEIKVVY	9	Unmodified	_DPNEIKVVY_					0	0	0		nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12;RPL12|p.V42Lfs*15|1|0.26|ENSG00000197958|chr9:127449697-127449697|T/-|frameshift_variant	nc|ENSG00000197958|P30050-2|RPL12	nc|ENSG00000197958|P30050-2|RPL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.785888671875	2	538.784764	1075.55498	1.3966	0.00075246	0.7044	0.00037952	2.101	0.001132	538.7851574125775	37.827	0.19615	37.827	37.752	37.948	0					13	6	3	0	0	0	0.078509	1	14808	14808		85.161	35.625	1	97467			7651	7512	4211	4236	7810	7810					0.020220193778186513
DPNEIKVVY	9	Unmodified	_DPNEIKVVY_					0	0	0		nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12;RPL12|p.V42Lfs*15|1|0.26|ENSG00000197958|chr9:127449697-127449697|T/-|frameshift_variant	nc|ENSG00000197958|P30050-2|RPL12	nc|ENSG00000197958|P30050-2|RPL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7857666015625	2	538.784764	1075.55498	0.69129	0.00037246	0.90743	0.00048891	1.5987	0.00086136	538.7853122785091	37.761	0.21271	37.761	37.657	37.869	0					8	4	2	0	0	0	0.18416	1	14803	14803		63.534	15.877	1	191320			7652	7512	4211	4236	7811	7811					0.020220193778186513
DPNEMIEEES	10	Unmodified	_DPNEMIEEES_					0	0	0			REV__RCN2|p.L289M|1|0.37|ENSG00000117906|chr15:76949133-76949133|C/A|missense_variant	REV__RCN2|p.L289M|1|0.37|ENSG00000117906|chr15:76949133-76949133|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.7377319335938	2	596.737351	1191.46015	0.1111	6.6301E-05	-0.3627	-0.00021643	-0.25159	-0.00015013	596.7368909898287	30.508	0.15852	30.508	30.432	30.59	0					5	3	2	0	0	0	0.71484	1	11416	11416		19.997	2.6318	1	70477	+		7653	21453	4212	4237	7812	7812					-0.12792326946328103
DPNFKKET	8	Unmodified	_DPNFKKET_					0	0	0		BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.N986Kfs*2|1|0.32|ENSG00000139618|chr13:32337305-32337306|-/A|frameshift_variant;BRCA2|p.L574Ffs*21|1|0.05|ENSG00000139618|chr13:32333199-32333200|-/TTTAAAGTTTGGATCA|frameshift_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7496337890625	2	489.748182	977.481811	0.771	0.0003776	2.6698	0.0013076	3.4409	0.0016852	489.7494002759857	45.39	0.12981	45.39	45.327	45.457	0					9	5	2	0	0	0	0.66989	1	18176	18176		37.812	2.1932	1	75313			7654	315;316	4213	4238	7813	7813					-0.007831093448203319
DPQHVVVLY	9	Unmodified	_DPQHVVVLY_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant;ENST00000549498.5_1_12:53442984-53449630:+|nuORF	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.287841796875	2	535.287474	1068.5604	-1.3579	-0.00072684	2.1928	0.0011738	0.83498	0.00044695	535.2886521028031	40.962	0.23083	40.962	40.826	41.057	0					14	8	2	0	0	0	0.41113	1	14485	14485		40.778	8.8233	1	106080			7655	11480	4214	4239	7814	7814					0.028857429603021956
DPQVRPLTLP	10	Unmodified	_DPQVRPLTLP_					0	0	0		ENST00000561090.5_1_14:24657607-24657993:-|nuORF	ENST00000561090.5_1_14:24657607-24657993:-|nuORF	ENST00000561090.5_1_14:24657607-24657993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.3282470703125	2	568.327131	1134.63971	0.25106	0.00014269	1.3817	0.00078526	1.6328	0.00092795	568.3278537326748	20.153	0.16686	20.153	20.045	20.212	0					5	3	2	0	0	0	0.57211	1	6502	6502		25.574	0	1	182200			7656	10702	4215	4240	7815	7815					0.07777389914417654
DPSDATPSFED	11	Unmodified	_DPSDATPSFED_					0	0	0		ENSG00000130997|ENST00000511885|POLN;nc|ENSG00000130997|Q7Z5Q5-3|POLN;ENST00000515357.5_1_4:2158125-2230958:-|nuORF	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.73583984375	2	590.735665	1179.45678	-0.10255	-6.0583E-05	-0.050328	-2.9731E-05	-0.15288	-9.0313E-05	590.7356550788074	49.907	0.29831	49.907	49.755	50.053	0					29	11	3	0	0	0	0.69733	1	18741	18741		27.882	1.1893	1	170010			7657	3688	4216	4241	7816	7816					-0.12577253728704818
DPSDLAHY	8	Unmodified	_DPSDLAHY_					0	0	0			REV__CLEC16A|p.Y604Ifs*18|1|0.23|ENSG00000038532|chr16:11044063-11044063|T/-|frameshift_variant	REV__CLEC16A|p.Y604Ifs*18|1|0.23|ENSG00000038532|chr16:11044063-11044063|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2040710449219	2	459.203607	916.392661	0.72255	0.0003318	-0.44532	-0.00020449	0.27723	0.0001273	459.2037859023981	49.501	0.74893	49.501	49.292	50.041	0					115	29	5	0	0	0	0.79882	1	18558	18558		19.36	2.655	1	5356600	+		7658	12510	4217	4242	7817	7817					-0.06887944304344273
DPSDSDEDS	9	Unmodified	_DPSDSDEDS_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.6626892089844	2	483.662166	965.309779	-0.19674	-9.5154E-05	-4.2465	-0.0020538	-4.4432	-0.002149	483.66264160526947	49.721	0.94299	49.721	49.418	50.361	0					154	41	6	0	0	0	0.53083	1	17979	17979		29.15	6.1071	1	404900	+		7659	16196	4218	4243	7818	7818					-0.1742635061365263
DPSDTLVIEGA	11	Unmodified	_DPSDTLVIEGA_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7745971679688	2	558.774593	1115.53463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.784	1	30.784	30.284	31.284	0								0	0	0	0.39048	1	11543	11543		39.253	1.4413	1		+		7660	16913	4219	4244	7819	7819					-0.018511960726527832
DPSQYQSL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DPSQYQSL_					1	0	0		TSPYL5|p.D47E|1|0.07|ENSG00000180543|chr8:97277704-97277704|G/T|missense_variant;TSPYL5|p.R137Afs*27|1|0.16|ENSG00000180543|chr8:97277436-97277436|G/-|frameshift_variant;TSPYL5|p.N134Mfs*30|1|0.59|ENSG00000180543|chr8:97277444-97277444|T/-|frameshift_variant;ENSG00000180543|ENST00000322128|TSPYL5	TSPYL5|p.D47E|1|0.07|ENSG00000180543|chr8:97277704-97277704|G/T|missense_variant	TSPYL5|p.D47E|1|0.07|ENSG00000180543|chr8:97277704-97277704|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2240905761719	2	490.221997	978.429441	3.4895	0.0017106	-0.045118	-2.2118E-05	3.4444	0.0016885	490.2218737831672	32.184	0.16689	32.184	32.077	32.244	0					11	7	2	0	0	0	0.46905	1	10717	10717		63.306	63.306	1	91597			7661	6808	4220	4245	7820	7820					-0.060636924784148505
DPSSGHPR	8	Unmodified	_DPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.70166015625	2	426.701566	851.388579	-1.0188	-0.00043473	0.68893	0.00029397	-0.32989	-0.00014077	426.70204963209153	14.975	0.15286	14.975	14.825	14.978	0					9	6	2	0	0	0	0.63077	1	3313	3313		44.117	11.304	1	83452			7662	5683	4221	4246	7821	7821					-0.04305989007377775
DPTSPATKY	9	Unmodified	_DPTSPATKY_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2402038574219	2	490.24019	978.465826	0.598	0.00029317	-0.84829	-0.00041587	-0.25029	-0.0001227	490.23975240903695	34.928	0.21152	34.928	34.863	35.075	0					12	6	2	0	0	0	0.39215	1	13524	13524		42.396	1.618	1	562210			7663	23043	4222	4247	7822	7822					-0.024268155817139814
DPVEPHGEM	9	Unmodified	_DPVEPHGEM_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.71685791015625	2	505.716024	1009.4175	0.7448	0.00037666	-0.44756	-0.00022634	0.29724	0.00015032	505.7158065938365	25.4	0.19813	25.4	25.337	25.535	0					18	8	3	0	0	0	0.071197	1	7642	7642		87.754	31.033	1	97665			7664	3665	4223	4248	7823	7823					-0.0868363249325057
DPVEPHGEM	9	Unmodified	_DPVEPHGEM_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.71563720703125	2	505.716024	1009.4175	0.81905	0.00041421	-1.4828	-0.00074985	-0.66371	-0.00033565	505.7152962309846	25.708	0.30189	25.708	25.584	25.886	0					15	5	4	0	0	0	0.1115	1	8808	8808		76.774	30.822	1	982420			7665	3665	4223	4248	7824	7824					-0.0868363249325057
DPVEPHGEM	9	Unmodified	_DPVEPHGEM_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.71636962890625	2	505.716024	1009.4175	3.7185	0.0018805	-2.6072	-0.0013185	1.1113	0.00056201	505.714325687014	25.475	0.17154	25.475	25.407	25.579	0					8	6	2	0	0	0	0.032656	1	7918	7918		106.42	37.628	1	78453			7666	3665	4223	4248	7825	7825					-0.0868363249325057
DPVEPHGEM	9	Unmodified	_DPVEPHGEM_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7164001464844	2	505.716024	1009.4175	0.12962	6.5551E-05	0.046941	2.3739E-05	0.17656	8.929E-05	505.7160451627536	25.688	0.39837	25.688	25.552	25.951	0					14	6	3	0	0	0	0.0792	1	9126	9126		84.916	38.964	1	439730			7667	3665	4223	4248	7826	7826					-0.0868363249325057
DPVEPHGEM	9	Unmodified	_DPVEPHGEM_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7163391113281	2	505.716024	1009.4175	0.16635	8.4125E-05	-0.22393	-0.00011325	-0.057585	-2.9121E-05	505.7159752376989	25.531	0.18928	25.531	25.443	25.633	0					11	5	3	0	0	0	0.1236	1	8125	8125		73.975	20.623	1	129410			7668	3665	4223	4248	7827	7827					-0.0868363249325057
DPVEPHGEM	9	Unmodified	_DPVEPHGEM_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7161560058594	2	505.716024	1009.4175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.598	1	25.598	25.098	26.098	0								0	0	0	0.091069	1	8983	8983		74.255	16.444	1				7669	3665	4223	4248	7828	7828					-0.0868363249325057
DPVQAGLSSL	10	Unmodified	_DPVQAGLSSL_					0	0	0			REV__ENST00000456102.5_1_20:35806883-35832332:+|nuORF	REV__ENST00000456102.5_1_20:35806883-35832332:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.76177978515625	2	493.761289	985.508025	-0.04907	-2.4229E-05	0.16584	8.1883E-05	0.11677	5.7654E-05	493.76141855045586	39.357	0.16104	39.357	39.257	39.418	0					8	5	2	0	0	0	0.32758	1	15478	15478		64.207	2.0999	1	117860	+		7670	14223	4224	4249	7829	7829					0.014691598266836081
DPVTLNVRY	9	Unmodified	_DPVTLNVRY_					0	0	0		ENSG00000007306|ENST00000401731|CEACAM7	ENSG00000007306|ENST00000401731|CEACAM7	ENSG00000007306|ENST00000401731|CEACAM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7911987304688	2	538.790381	1075.56621	0.68831	0.00037085	4.4692	0.002408	5.1575	0.0027788	538.7905253403567	39.132	0.28462	39.132	39.032	39.317	0					18	6	4	0	0	0	0.037924	1	15432	15432		101.25	43.441	1	658020			7671	1002	4225	4250	7830	7830					0.03144841471953441
DPVVADYKY	9	Unmodified	_DPVVADYKY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.26513671875	2	535.263665	1068.51278	1.9271	0.0010315	-0.78915	-0.0004224	1.1379	0.00060909	535.2636219874777	34.71	0.098068	34.71	34.663	34.761	0					4	2	2	0	0	0	0.19891	1	12965	12965		63.534	35.652	1	31522			7672	3765	4226	4251	7831	7831					-0.018739560305675695
DPVVADYKY	9	Unmodified	_DPVVADYKY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.263916015625	2	535.263665	1068.51278	2.2135	0.0011848	-2.8463	-0.0015235	-0.63282	-0.00033873	535.2624800376178	34.744	0.28924	34.744	34.533	34.822	0					14	7	3	0	0	0	0.067603	1	12978	12978		72.879	28.762	1	129090			7673	3765	4226	4251	7832	7832					-0.018739560305675695
DPVVADYKY	9	Unmodified	_DPVVADYKY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2650756835938	2	535.263665	1068.51278	1.2028	0.00064382	0.49453	0.00026471	1.6974	0.00090853	535.7652855781372	34.757	0.16206	34.757	34.657	34.819	0					7	4	2	0	0	0	0.079477	1	13409	13409		88.177	33.412	1	82527			7674	3765	4226	4251	7833	7833					-0.018739560305675695
DPVVADYKY	9	Unmodified	_DPVVADYKY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.263671875	2	535.263665	1068.51278	0.7064	0.00037811	-0.34887	-0.00018674	0.35753	0.00019137	535.2634113788389	34.692	0.25768	34.692	34.589	34.847	0					11	5	3	0	0	0	0.14673	1	13333	13333		61.691	22.438	1	188100			7675	3765	4226	4251	7834	7834					-0.018739560305675695
DPVVAQYQ	8	Unmodified	_DPVVAQYQ_					0	0	0			REV__RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant	REV__RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2290954589844	2	460.229625	918.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.491	1	36.491	35.991	36.991	0								0	0	0	1.7419	1	14216	14216		33.516	0	1		+		7676	13417	4227	4252	7835	7835					-0.017787808905723068
DQDPKPALV	9	Unmodified	_DQDPKPALV_					0	0	0		ENSG00000129465|ENST00000216274|RIPK3;ENST00000557624.1_1_14:24808148-24809140:-|nuORF;nc|ENSG00000129465|Q9Y572-3|RIPK3;nc|ENSG00000129465|Q9Y572-2|RIPK3	ENSG00000129465|ENST00000216274|RIPK3	ENSG00000129465|ENST00000216274|RIPK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.76373291015625	2	491.763832	981.513111	0.58194	0.00028618	-0.79085	-0.00038891	-0.20891	-0.00010274	491.7634521235686	35.75	0.25915	35.75	35.637	35.896	0					22	7	4	0	0	0	0.45358	1	13864	13864		37.159	0	1	1709300			7677	3598	4228	4253	7836	7836					0.021614636892763883
DQGRCPEIQ	9	Unmodified	_DQGRCPEIQ_					0	0	0		ENST00000439119.5_1_22:21389692-21399270:-|nuORF	ENST00000439119.5_1_22:21389692-21399270:-|nuORF	ENST00000439119.5_1_22:21389692-21399270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2424926757812	2	523.240198	1044.46584	-0.0043587	-2.2806E-06	0.69112	0.00036162	0.68676	0.00035934	523.2405782474885	11.98	1.0868	11.98	11.756	12.843	0					74	28	5	0	0	0	0.45358	1	2514	2514		37.159	5.6293	1	6898300			7678	9554	4229	4254	7837	7837					-0.0546113885336581
DQHASLLIQ	9	Unmodified	_DQHASLLIQ_					0	0	0			REV__ENST00000503766.5_1_6:43191760-43192180:+|nuORF	REV__ENST00000503766.5_1_6:43191760-43192180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.1854553222656	3	342.185579	1023.53491	0.52511	0.00017969	-0.69443	-0.00023762	-0.16932	-5.7938E-05	342.18530961570633	12.423	0.50272	12.423	12.168	12.671	0					34	12	4	0	0	0	0.38666	1	2758	2758		42.864	2.8061	1	1115100	+		7679	19820	4230	4255	7838	7838					0.024082684378640806
DQLRTAPHW	9	Unmodified	_DQLRTAPHW_					0	0	0			REV__SMAD3|p.V331Rfs*31|1|0.42|ENSG00000166949|chr15:67184843-67184844|-/C|frameshift_variant	REV__SMAD3|p.V331Rfs*31|1|0.42|ENSG00000166949|chr15:67184843-67184844|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.28515625	2	562.285797	1122.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.887	1	32.887	32.387	33.387	0								0	0	0	0.3428	1	12536	12536		26.693	0	1		+		7680	21543	4231	4256	7839	7839					0.0006649290628502058
DQLVKSDGL	9	Unmodified	_DQLVKSDGL_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.76123046875	2	487.761289	973.508025	-1.2465	-0.00060798	0.74591	0.00036382	-0.50056	-0.00024415	487.7615920570338	25.764	0.24315	25.764	25.655	25.898	0					9	4	3	0	0	0	0.22837	1	8046	8046		58.23	8.6939	1	377110	+		7681	15218	4232	4257	7840	7840					0.02021159826665553
DQMVWFRE	8	Unmodified	_DQMVWFRE_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7567138671875	2	555.755484	1109.49641	1.8117	0.0010069	0.07679	4.2677E-05	1.8885	0.0010495	555.7560816512713	26.167	0.38458	26.167	25.874	26.259	0					14	9	2	0	0	0	0.6088	1	9006	9006		47.657	3.5405	1	395190			7682	7354	4233	4258	7841	7841					-0.05395360468310173
DQNKDRMLEIL	11	Unmodified	_DQNKDRMLEIL_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	687.8534545898438	2	687.855926	1373.6973	-1.6552	-0.0011385	-3.1025	-0.0021341	-4.7577	-0.0032726	688.3552376548815	48.915	0.18608	48.915	48.829	49.015	0					16	11	2	0	0	0	0.70609	1	18455	18455		27.047	3.5246	1	105100			7683	2620	4234	4259	7842	7842					0.025398640576668186
DQPPLGGLPLA	11	Unmodified	_DQPPLGGLPLA_					0	0	0		ENST00000265052.9_1_3:127410590-127410752:-|nuORF	ENST00000265052.9_1_3:127410590-127410752:-|nuORF	ENST00000265052.9_1_3:127410590-127410752:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.301513671875	2	539.300581	1076.58661	1.4264	0.00076924	-0.31415	-0.00016942	1.1122	0.00059982	539.3003995702425	39.201	0.13588	39.201	39.132	39.268	0					9	4	3	0	0	0	0.49805	1	15419	15419		44.377	10.205	1	101420			7684	8342	4235	4260	7843	7843					0.05138012131783398
DQPVEDPDPE	10	Unmodified	_DQPVEDPDPE_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7406616210938	2	570.738208	1139.46186	3.4157	0.0019494	0.9247	0.00052776	4.3404	0.0024772	570.738702780562	12.406	0.44854	12.406	12.122	12.571	0					32	13	3	0	0	0	0.71484	1	2577	2577		19.997	0.89325	1	460400			7685	1432	4236	4261	7844	7844					-0.10228949866086623
DQQLRSLQ	8	Unmodified	_DQQLRSLQ_					0	0	0		nc|ENSG00000119397|Q7Z7A1-3|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant	nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-3|CNTRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.26483154296875	2	494.26453	986.514508	0.89957	0.00044463	-0.065411	-3.233E-05	0.83416	0.0004123	494.26453223510816	23.276	0.16877	23.276	23.167	23.335	0					7	3	3	0	0	0	0.5535	1	7880	7880		54.776	0	1	783720			7686	3109	4237	4262	7845	7845					0.020710977780368012
DQQTGLDRSK	10	Unmodified	_DQQTGLDRSK_					0	0	0			REV__ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	REV__ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.2904052734375	2	574.288734	1146.56291	3.3414	0.0019189	-0.3358	-0.00019285	3.0056	0.0017261	574.288490948856	12.721	0.54399	12.721	12.599	13.143	0					29	12	4	0	0	0	0.3029	1	2764	2764		54.722	0	1	3212600	+		7687	15967	4238	4263	7846	7846					-0.004504533727185844
DQRRKLKS	8	Unmodified	_DQRRKLKS_					0	0	0			REV__nc|ENSG00000166323|Q8NCR3-2|MFI	REV__nc|ENSG00000166323|Q8NCR3-2|MFI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8107299804688	2	515.809439	1029.60433	1.5125	0.00078016	1.3542	0.00069853	2.8667	0.0014787	515.8100589518643	38.978	0.43606	38.978	38.778	39.214	0					18	9	3	0	0	0	0.64746	1	15357	15357		47.657	6.8792	1	586310	+		7688	16107	4239	4264	7847	7847					0.09070772177278741
DQSGNYSQEC	10	Unmodified	_DQSGNYSQEC_					0	0	0		IL21R|p.P123Lfs*4|1|0.23|ENSG00000103522|chr16:27442973-27442973|C/-|frameshift_variant;IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant;ENSG00000103522|ENST00000337929|IL21R	IL21R|p.P123Lfs*4|1|0.23|ENSG00000103522|chr16:27442973-27442973|C/-|frameshift_variant	IL21R|p.P123Lfs*4|1|0.23|ENSG00000103522|chr16:27442973-27442973|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.7086791992188	2	565.706385	1129.39822	3.4702	0.0019631	1.0639	0.00060183	4.534	0.0025649	565.7071727703194	12.478	0.1997	12.478	12.371	12.571	0					7	5	2	0	0	0	0.74461	1	2656	2656		14.137	3.8719	1	415520			7689	2248	4240	4265	7848	7848					-0.16130633574812236
DQSKPPRK	8	Unmodified	_DQSKPPRK_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2701721191406	2	478.269616	954.524678	-2.8979	-0.001386	2.9271	0.0014	0.029258	1.3993E-05	478.27095583766834	12.807	0.23475	12.807	12.594	12.829	0					19	13	2	0	0	0	0.61938	1	2494	2494		45.952	3.5558	1	126420			7690	7595	4241	4266	7849	7849					0.045597055032772005
DQSRENSI	8	Unmodified	_DQSRENSI_					0	0	0		ENSG00000268988|ENST00000598475|SPANXN2	ENSG00000268988|ENST00000598475|SPANXN2	ENSG00000268988|ENST00000598475|SPANXN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7242431640625	2	474.722695	947.430838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.364	1	29.364	28.864	29.864	0								0	0	0	1.7419	1	9868	9868		37.812	1.3648	1				7691	8081	4242	4267	7850	7850					-0.0449805838965176
DQSVICNPA	9	Unmodified	_DQSVICNPA_					0	0	0			REV__ENSG00000135074|ENST00000257527|ADAM19	REV__ENSG00000135074|ENST00000257527|ADAM19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.71832275390625	2	473.718567	945.422581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.18	1	31.18	30.68	31.68	0								0	0	0	0.30504	1	11734	11734		34.173	2.2177	1		+		7692	14781	4243	4268	7851	7851					-0.052313286306457485
DQSVVIPNL	9	Unmodified	_DQSVVIPNL_					0	0	0		PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7708435058594	2	492.771657	983.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.423	1	38.423	37.923	38.923	0								0	0	0	0.21054	1	14600	14600		49.442	1.5259	1				7693	2231	4244	4269	7852	7852					0.036337502063247484
DQTPLFYP	8	Unmodified	_DQTPLFYP_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000514312.1_1_5:10415712-10417549:+|nuORF;ENST00000505253.1_1_5:10413496-10422048:+|nuORF	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7403564453125	2	490.739825	979.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.074	1	29.074	28.574	29.574	0								0	0	0	1.7419	1	10726	10726		31.955	6.5047	1				7694	4674	4245	4270	7853	7853					-0.025456102307657602
DQVEVEAAL	9	Unmodified	_DQVEVEAAL_					0	0	0			REV__CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant	REV__CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2452697753906	2	487.245472	972.476391	-0.083543	-4.0706E-05	0.45155	0.00022002	0.36801	0.00017931	487.24541845001914	40.708	0.32117	40.708	40.473	40.794	0					23	13	2	0	0	0	0.47038	1	15970	15970		35.618	0	1	153510	+		7695	12656	4246	4271	7854	7854					-0.010948329272878254
DQVGFIPGM	9	Unmodified	_DQVGFIPGM_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|35|1|sense;L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|66|3|sense;L1PA3_dup1115|chr2:110017555-110020014:+|1.763195504976095|0.4680770941019235|1.91|454.0|61|3|sense;nc|ENSG999|O00370|L1_ORF2	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|35|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|35|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2320556640625	2	482.233853	962.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.933	1	19.933	19.433	20.433	0								0	0	0	0.28164	1	5251	5251		38.806	1.647	1				7696	11287	4247	4272	7855	7855					-0.029575502456054892
DQVMADRWS	9	Unmodified	_DQVMADRWS_					0	0	0			REV__ENSG00000182050|ENST00000611864|MGAT4C	REV__ENSG00000182050|ENST00000611864|MGAT4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.24853515625	2	554.248023	1106.48149	1.3127	0.00072757	-1.1646	-0.00064546	0.14815	8.2113E-05	554.2473477718919	14.278	0.086651	14.278	14.224	14.311	0					9	3	3	0	0	0	0.61124	1	2923	2923		15.642	0.77694	1	233530	+		7697	16862	4248	4273	7856	7856					-0.06748852336318123
DQYGMLYK	8	Unmodified	_DQYGMLYK_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2408447265625	2	509.239135	1016.46372	3.9287	0.0020007	-0.81232	-0.00041367	3.1164	0.001587	509.2391020606538	25.906	0.60301	25.906	25.734	26.337	0					33	15	4	0	0	0	0.25873	1	8089	8089		96.19	21.935	1	839530			7698	7864	4249	4274	7857	7857					-0.04385567591191375
DQYGMLYK	8	Unmodified	_DQYGMLYK_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2420654296875	2	509.239135	1016.46372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.096	1	33.096	32.596	33.596	0								0	0	0	1.7419	1	12545	12545		38.806	6.8513	1				7699	7864	4249	4274	7858	7858					-0.04385567591191375
DQYGMLYK	8	Oxidation (M)	_DQYGM(Oxidation (M))LYK_		DQYGM(1)LYK		DQYGM(93)LYK	0	0	1		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.238525390625	2	517.236593	1032.45863	3.3206	0.0017176	0.10578	5.4715E-05	3.4264	0.0017723	517.2368227088054	21.418	0.66529	21.418	21.206	21.871	0					40	13	5	0	0	0	0.2678	1	6931	6931		93.195	29.889	1	1702400			7700	7864	4249	4275	7859	7859		317			-0.056298714538115746
DRAKMLVL	8	Unmodified	_DRAKMLVL_					0	0	0			REV__ENST00000369847.3_2_10:105086334-105104817:-|nuORF	REV__ENST00000369847.3_2_10:105086334-105104817:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.28424072265625	2	473.281137	944.547722	0.65339	0.00030924	4.2714	0.0020216	4.9248	0.0023308	473.282712620812	36.368	0.46463	36.368	36.217	36.681	0					17	9	3	0	0	0	0.29152	1	14117	14117		85.359	8.5128	1	846330	+		7701	18627	4250	4276	7860	7860					0.07323008296384614
DRCITQLFF	9	Carbamidomethyl (C)	_DRC(Carbamidomethyl (C))ITQLFF_	DRC(1)ITQLFF		DRC(58)ITQLFF		0	1	0		ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2991943359375	2	600.297516	1198.58048	3.1183	0.0018719	-0.54664	-0.00032815	2.5717	0.0015438	600.2975238298196	31.299	0.7604	31.299	31.141	31.902	0					35	15	4	0	0	0	0.22837	1	11677	11677		58.23	18.977	1	1425000			7702	7856	4251	4277	7861	7861	341				-0.010868293714338506
DRCWYWRRRHL	11	Unmodified	_DRCWYWRRRHL_					0	0	0			REV__ENST00000399627.3_1_22:50905837-50906184:-|nuORF	REV__ENST00000399627.3_1_22:50905837-50906184:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.6139526367188	3	549.612632	1645.81607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.522	1	46.522	46.022	47.022	0								0	0	0	0.45674	1	14337	14337		3.4087	0	1		+		7703	18934	4252	4278	7862	7862					0.018991205965221525
DREFGKVV	8	Unmodified	_DREFGKVV_					0	0	0			REV__ST6GALNAC2|p.I183V|1|0.05|ENSG00000070731|chr17:76572759-76572759|T/C|missense_variant	REV__ST6GALNAC2|p.I183V|1|0.05|ENSG00000070731|chr17:76572759-76572759|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2584228515625	2	475.258717	948.50288	-0.11986	-5.6964E-05	-0.50123	-0.00023821	-0.62109	-0.00029518	475.25871695911695	23.72	0.5195	23.72	23.361	23.881	0					22	10	3	0	0	0	0.59714	1	8125	8125		49.536	8.7579	1	1370900	+		7704	21607	4253	4279	7863	7863					0.026569007547209367
DREQEAQQK	9	Unmodified	_DREQEAQQK_					0	0	0			REV__ENSG00000122952|ENST00000373944|ZWINT	REV__ENSG00000122952|ENST00000373944|ZWINT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.2757568359375	2	566.273084	1130.53161	3.4713	0.0019657	1.1359	0.00064325	4.6073	0.002609	566.2738887333228	29.672	0.51618	29.672	29.566	30.082	0					25	10	3	0	0	0	0.099922	1	10887	10887		79.451	13.022	1	3299700	+		7705	14347	4254	4280	7864	7864					-0.02843026406799254
DRFFDMRQ	8	Unmodified	_DRFFDMRQ_					0	0	0			REV__ENST00000370153.6_2_1:100480902-100480953:+|nuORF	REV__ENST00000370153.6_2_1:100480902-100480953:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7559204101562	2	557.758558	1113.50256	-0.18132	-0.00010113	-3.336	-0.0018607	-3.5173	-0.0019618	557.7562964188716	11.688	0.096749	11.688	11.637	11.734	0					4	2	2	0	0	0	0.78142	1	2467	2467		23.042	3.0457	1	60023	+		7706	18631	4255	4281	7865	7865					-0.049648422367909006
DRGAPGLAL	9	Unmodified	_DRGAPGLAL_					0	0	0		ENST00000588621.5_1_19:45767955-45791108:+|nuORF;nc|ENSG00000007047|Q96L34-2|MARK4;ENSG00000007047|ENST00000262891|MARK4	ENST00000588621.5_1_19:45767955-45791108:+|nuORF	ENST00000588621.5_1_19:45767955-45791108:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.245361328125	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.375	1	17.375	16.875	17.875	0								0	0	0	0.37146	1	4343	4343		19.36	0.25645	1				7707	992	4256	4282	7866	7866					0.03716631583222352
DRGPTINHL	9	Unmodified	_DRGPTINHL_					0	0	0			REV__ENST00000459673.1_1_10:85972822-85974374:+|nuORF	REV__ENST00000459673.1_1_10:85972822-85974374:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7700500488281	2	511.772522	1021.53049	-0.44286	-0.00022664	-3.75	-0.0019192	-4.1929	-0.0021458	511.7705755857349	10.559	0.10221	10.559	10.518	10.62	0					6	5	2	0	0	0	0.61124	1	2033	2033		18.324	0	1	47017	+		7708	15391	4257	4283	7867	7867					0.02058804014927773
DRHKVPTEK	9	Unmodified	_DRHKVPTEK_					0	0	0		USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant	USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.3067626953125	2	555.306729	1108.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.836	1	13.836	13.336	14.336	0								0	0	0	0.37179	1	3307	3307		18.262	2.6203	1				7709	6260	4258	4284	7868	7868					0.048950485947898414
DRHLVKRR	8	Unmodified	_DRHLVKRR_					0	0	0			REV__nc|ENSG00000059758|Q00537-2|CDK17	REV__nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.51019287109375	3	360.556341	1078.64719	0.29383	0.00010594	1.4775	0.00053272	1.7713	0.00063866	360.5569064214071	18.895	0.11668	18.895	18.834	18.951	0					6	2	3	0	0	0	0.75323	1	5870	5870		26.693	3.1702	1	215750	+		7710	13077	4259	4285	7869	7869					0.1110158702535955
DRHRKPFQ	8	Unmodified	_DRHRKPFQ_					0	0	0			REV__ENST00000305877.12_2_22:23522425-23523292:+|nuORF	REV__ENST00000305877.12_2_22:23522425-23523292:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.86590576171875	3	361.865063	1082.57336	1.413	0.00051131	1.0399	0.0003763	2.4529	0.00088761	361.86544097182787	32.925	0.31577	32.925	32.793	33.109	0					18	7	3	0	0	0	0.79719	1	12564	12564		14.865	14.865	1	1182800	+		7711	18239	4260	4286	7870	7870					0.03537618863015268
DRILCDVPCSG	11	Carbamidomethyl (C)	_DRILCDVPC(Carbamidomethyl (C))SG_	DRILCDVPC(1)SG		DRILC(-38)DVPC(38)SG		0	1	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.S339Vfs*17|1|0.16|ENSG00000037474|chr5:6616733-6616733|T/-|frameshift_variant;NSUN2|p.F423Lfs*6|1|0.21|ENSG00000037474|chr5:6609880-6609880|A/-|frameshift_variant;NSUN2|p.Y537Mfs*10|1|0.1|ENSG00000037474|chr5:6605401-6605401|A/-|frameshift_variant	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	617.781005859375	2	617.781373	1233.54819	0.17221	0.00010639	-1.0027	-0.00061944	-0.83047	-0.00051305	617.7808732611524	24.666	0.22656	24.666	24.568	24.795	0					11	6	3	0	0	0	0.23884	1	7313	7313		69.628	7.5202	2	152360			7712	1177	4261	4287	7871	7871	40				-0.05923984836749696
DRILCDVPCSG	11	Carbamidomethyl (C)	_DRILCDVPC(Carbamidomethyl (C))SG_	DRILC(0.059)DVPC(0.941)SG		DRILC(-12)DVPC(12)SG		0	1	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.S339Vfs*17|1|0.16|ENSG00000037474|chr5:6616733-6616733|T/-|frameshift_variant;NSUN2|p.F423Lfs*6|1|0.21|ENSG00000037474|chr5:6609880-6609880|A/-|frameshift_variant;NSUN2|p.Y537Mfs*10|1|0.1|ENSG00000037474|chr5:6605401-6605401|A/-|frameshift_variant	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	617.78125	2	617.781373	1233.54819	-2.0457	-0.0012638	1.6423	0.0010146	-0.40348	-0.00024927	617.7824912051846	24.766	0.13724	24.766	24.677	24.814	0					7	3	3	0	0	0	0.35529	1	7781	7781		56.434	8.4743	2	153510			7713	1177	4261	4287	7872	7872	40				-0.05923984836749696
DRITLVGSTK	10	Unmodified	_DRITLVGSTK_					0	0	0		ENSG00000177098|ENST00000324727|SCN4B	ENSG00000177098|ENST00000324727|SCN4B	ENSG00000177098|ENST00000324727|SCN4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3184204101562	2	545.316763	1088.61897	1.9221	0.0010482	0.27062	0.00014757	2.1928	0.0011957	545.316743068158	51.257	1.015	51.257	51.026	52.041	0					124	62	3	0	0	0	0.64162	1	19047	19047		29.17	0.020503	1	158310			7714	6645	4262	4288	7873	7873					0.07820799534761136
DRKLVFSL	8	Unmodified	_DRKLVFSL_					0	0	0			REV__ENST00000464491.5_1_2:172180836-172182590:-|nuORF	REV__ENST00000464491.5_1_2:172180836-172182590:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.29302978515625	2	489.292559	976.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.439	1	44.439	43.939	44.939	0								0	0	0	1.7419	1	17802	17802		44.117	1.7207	1		+		7715	19404	4263	4289	7874	7874					0.0813435068552053
DRKMMNLK	8	Unmodified	_DRKMMNLK_					0	0	0			REV__ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant	REV__ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.277099609375	2	518.275529	1034.53651	0.11803	6.1174E-05	1.5739	0.00081571	1.6919	0.00087689	518.2764495214592	33.224	0.36686	33.224	33.051	33.418	0					42	15	4	0	0	0	0.34985	1	11125	11125		76.847	2.8719	1	463290	+		7716	16754	4264	4290	7875	7875					0.020618629306000003
DRKMMNLK	8	Unmodified	_DRKMMNLK_					0	0	0			REV__ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant	REV__ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.77685546875	2	518.275529	1034.53651	3.3418	0.001732	-0.83313	-0.00043179	2.5087	0.0013002	518.2754026861012	33.373	0.46616	33.373	33.167	33.633	0					23	9	3	0	0	0	0.63077	1	12643	12643		44.117	1.2525	1	5747500	+		7717	16754	4264	4290	7876	7876					0.020618629306000003
DRLKACSLLQ	10	Unmodified	_DRLKACSLLQ_					0	0	0			REV__ENST00000530737.2_1_11:828562-829423:+|nuORF	REV__ENST00000530737.2_1_11:828562-829423:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8209228515625	2	573.818615	1145.62268	3.3513	0.0019231	0.60833	0.00034907	3.9596	0.0022721	573.8189417506871	38.912	0.34713	38.912	38.81	39.157	0					15	7	3	0	0	0	0.3337	1	15348	15348		63.534	10.445	1	488270	+		7718	20051	4265	4291	7877	7877					0.05569146036964412
DRLNNFVEG	9	Unmodified	_DRLNNFVEG_					0	0	0		tr|U7SRU2|U7SRU2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01428PE=4SV=1	tr|U7SRU2|U7SRU2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01428PE=4SV=1	tr|U7SRU2|U7SRU2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01428PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2640380859375	2	532.261988	1062.50942	3.4086	0.0018143	-0.22812	-0.00012142	3.1805	0.0016928	532.2621094603478	25.462	0.3187	25.462	25.331	25.65	0					27	6	6	0	0	0	0.17854	1	8916	8916		64.207	64.207	1	10508000			7719	22727	4266	4292	7878	7878					-0.019332060845727028
DRLNVNPK	8	Unmodified	_DRLNVNPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2703857421875	2	478.269616	954.524678	-0.11658	-5.5756E-05	-0.6972	-0.00033345	-0.81378	-0.00038921	478.2694759991034	14.197	0.35762	14.197	13.991	14.348	0					14	7	3	0	0	0	0.49216	1	3615	3615		60.972	4.5381	1	253190	+		7720	15602;22247	4267	4293	7879	7879					0.045597055032772005
DRLVVPEL	8	Unmodified	_DRLVVPEL_					0	0	0			REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.776611328125	2	470.776742	939.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.661	1	32.661	32.161	33.161	0								0	0	0	1.7419	1	10910	10910		16.473	1.809	1		+		7721	17718	4268	4294	7880	7880					0.0667435793156983
DRMNLLMPWWF	11	Unmodified	_DRMNLLMPWWF_					0	0	0			REV__RANBP6|p.R915W|2|0.27|ENSG00000137040|chr9:6012865-6012865|G/A|missense_variant	REV__RANBP6|p.R915W|2|0.27|ENSG00000137040|chr9:6012865-6012865|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.57916259765625	3	503.577425	1507.71045	3.6056	0.0018157	-1.7742	-0.00089345	1.8314	0.00092227	503.57667905929134	15.177	0.076843	15.177	15.142	15.219	0					5	3	2	0	0	0	0.80453	1	3408	3408		14.086	3.9821	1	38500	+		7722	21444	4269	4295	7881	7881					-0.023099763639265802
DRPRCASLL	9	Unmodified	_DRPRCASLL_					0	0	0			REV__GDF7|p.R228Afs*41|1|0.5|ENSG00000143869|chr2:20670747-20670747|C/-|frameshift_variant	REV__GDF7|p.R228Afs*41|1|0.5|ENSG00000143869|chr2:20670747-20670747|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.779052734375	2	515.776751	1029.53895	3.2625	0.0016827	1.2871	0.00066386	4.5496	0.0023466	515.777343622031	38.771	0.49953	38.771	38.61	39.11	0					26	10	3	0	0	0	0.41113	1	15235	15235		40.778	1.972	1	1301100	+		7723	15213	4270	4296	7882	7882					0.025360346599200057
DRQAPELR	8	Unmodified	_DRQAPELR_					0	0	0			REV__nc|ENSG00000166526|P17036-2|ZNF3	REV__nc|ENSG00000166526|P17036-2|ZNF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7650146484375	2	492.764697	983.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.021	1	19.021	18.521	19.521	0								0	0	0	1.7419	1	5941	5941		34.173	2.6427	1		+		7724	16129	4271	4297	7883	7883					0.02242517497904828
DRQGSGPRG	9	Unmodified	_DRQGSGPRG_					0	0	0		ENST00000569674.1_1_1:108743179-108743308:-|nuORF	ENST00000569674.1_1_1:108743179-108743308:-|nuORF	ENST00000569674.1_1_1:108743179-108743308:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.232421875	2	465.231022	928.447491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.871	1	45.871	45.371	46.371	0								0	0	0	0.35737	1	18378	18378		23.523	0.48021	1				7725	10783	4272	4298	7884	7884					-0.019595127130401124
DRQLGKEAQ	9	Unmodified	_DRQLGKEAQ_					0	0	0			REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7776489257812	2	522.775262	1043.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.592	1	17.592	17.092	18.092	0								0	0	0	0.33029	1	4417	4417		29.17	2.374	1		+		7726	20247	4273	4299	7885	7885					0.015944828067631533
DRQQLPAFL	9	Unmodified	_DRQQLPAFL_					0	0	0		FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant;FAM83E|p.Q297Pfs*33|1|0.38|ENSG00000105523|chr19:48603780-48603781|-/G|frameshift_variant;ENSG00000105523|ENST00000263266|FAM83E	FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant	FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.298828125	2	544.298373	1086.58219	0.36688	0.00019969	0.75984	0.00041358	1.1267	0.00061327	544.2986755238709	34.507	0.40674	34.507	34.284	34.691	0					25	10	3	0	0	0	0.30951	1	12856	12856		49.442	11.63	1	238890			7727	2368	4274	4300	7886	7886					0.04236547708865146
DRQQLPAFL	9	Unmodified	_DRQQLPAFL_					0	0	0		FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant;FAM83E|p.Q297Pfs*33|1|0.38|ENSG00000105523|chr19:48603780-48603781|-/G|frameshift_variant;ENSG00000105523|ENST00000263266|FAM83E	FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant	FAM83E|p.Q297Rfs*6|1|0.48|ENSG00000105523|chr19:48603781-48603781|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2985229492188	2	544.298373	1086.58219	-1.4941	-0.00081323	2.4536	0.0013355	0.95952	0.00052226	544.2992719017652	34.274	0.42435	34.274	34.015	34.44	0					29	13	3	0	0	0	0.2873	1	12099	12099		51.335	1.8939	1	162110			7728	2368	4274	4300	7887	7887					0.04236547708865146
DRQQTLAIR	9	Unmodified	_DRQQTLAIR_					0	0	0		tr|U7T3Z6|U7T3Z6_FUSNUSmallribosomalsubunitproteinuS7OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsGPE=3SV=1	tr|U7T3Z6|U7T3Z6_FUSNUSmallribosomalsubunitproteinuS7OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsGPE=3SV=1	tr|U7T3Z6|U7T3Z6_FUSNUSmallribosomalsubunitproteinuS7OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsGPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8124389648438	2	550.812179	1099.60981	0.55861	0.00030769	-0.11413	-6.2864E-05	0.44448	0.00024483	550.8121582366937	20.693	0.10606	20.693	20.642	20.748	0					4	2	2	0	0	0	0.15163	1	6475	6475		67.494	7.3754	1	243980			7729	22979	4275	4301	7888	7888					0.06398450969072655
DRQTHEDEQ	9	Unmodified	_DRQTHEDEQ_					0	0	0		ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.2467041015625	2	579.244523	1156.47449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.515	1	18.515	18.015	19.015	0								0	0	0	0.3428	1	4619	4619		26.693	3.6504	1				7730	7835	4276	4302	7889	7889					-0.09748493683196102
DRRSPLPE	8	Unmodified	_DRRSPLPE_					0	0	0			REV__nc|ENSG00000147274|P38159-2|RBMX	REV__nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2586975097656	2	485.259248	968.503943	0.65142	0.00031611	-1.4405	-0.00069901	-0.78906	-0.0003829	485.25861552707755	13.009	0.16117	13.009	12.895	13.056	0					7	4	2	0	0	0	0.52345	1	2873	2873		57.811	1.0902	1	273070	+		7731	15345	4277	4303	7890	7890					0.018431151236086407
DRSSKREK	8	Unmodified	_DRSSKREK_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2716064453125	2	503.275429	1004.53631	1.0044	0.0005055	-2.3197	-0.0011674	-1.3152	-0.00066193	503.27408222905257	36.565	0.5083	36.565	36.141	36.649	0					44	14	4	0	0	0	0.32597	1	14175	14175		79.713	2.395	1	3761500	+		7732	12057	4278	4304	7891	7891					0.03421902526622489
DRSSKREK	8	Unmodified	_DRSSKREK_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2715759277344	2	503.275429	1004.53631	-2.0488	-0.0010311	-1.508	-0.00075896	-3.5569	-0.0017901	503.27457693215047	36.257	0.50356	36.257	36.093	36.597	0					37	21	2	0	0	0	0.27565	1	12931	12931		90.601	5.6853	1	1174900	+		7733	12057	4278	4304	7892	7892					0.03421902526622489
DRSSSLFLP	9	Unmodified	_DRSSSLFLP_					0	0	0			REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF	REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2693176269531	2	511.269281	1020.52401	-0.4361	-0.00022296	0.50264	0.00025698	0.066542	3.4021E-05	511.2695824084798	26.226	0.35869	26.226	26	26.359	0					15	7	3	0	0	0	0.20551	1	9367	9367		60.972	9.6365	1	106810	+		7734	18537	4279	4305	7893	7893					0.0145686606357458
DRTLVGPQR	9	Unmodified	_DRTLVGPQR_					0	0	0			REV__ENSG00000142511|ENST00000270590|GPR32	REV__ENSG00000142511|ENST00000270590|GPR32	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.294677734375	2	521.293622	1040.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.022	1	17.022	16.522	17.522	0								0	0	0	0.33029	1	3980	3980		29.15	2.4566	1		+		7735	15152	4280	4306	7894	7894					0.054027794233206805
DRVLRPAS	8	Unmodified	_DRVLRPAS_					0	0	0			REV__ENST00000427606.2_1_8:146220430-146220631:-|nuORF	REV__ENST00000427606.2_1_8:146220430-146220631:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2644958496094	2	457.264333	912.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.952	1	47.952	47.452	48.452	0								0	0	0	1.7419	1	15985	15985		27.882	0	1		+		7736	19126	4281	4307	7895	7895					0.054357228488470355
DRVLRPAS	8	Unmodified	_DRVLRPAS_					0	0	0			REV__ENST00000427606.2_1_8:146220430-146220631:-|nuORF	REV__ENST00000427606.2_1_8:146220430-146220631:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2648010253906	2	457.264333	912.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.303	1	46.303	45.803	46.803	0								0	0	0	1.7419	1	18531	18531		20.947	0.4651	1		+		7737	19126	4281	4307	7896	7896					0.054357228488470355
DRVSELKEMA	10	Unmodified	_DRVSELKEMA_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.2977294921875	2	589.297713	1176.58087	-1.7637	-0.0010393	1.5726	0.00092672	-0.19107	-0.0001126	589.298996958642	28.961	0.76432	28.961	28.737	29.502	0					49	19	3	0	0	0	0.6796	1	9654	9654		24.519	2.8169	1	250640	+		7738	13195	4282	4308	7897	7897					-0.00035454442217996984
DRVSLCHPG	9	Unmodified	_DRVSLCHPG_					0	0	0		AluSz6_dup43939|chr19:17810209-17810427:+|2.2506602683828447|0.1577247637628512|3.83|482.0|14|3|anti-sense;AluJb_dup103497|chr16:68836460-68836742:-|1.236851903517141|0.3217908410714272|1.94|479.0|11|1|anti-sense;ENST00000531708.1_1_11:58907597-58910423:-|nuORF;ENST00000501817.6_1_11:58907597-58910200:-|nuORF	AluSz6_dup43939|chr19:17810209-17810427:+|2.2506602683828447|0.1577247637628512|3.83|482.0|14|3|anti-sense	AluSz6_dup43939|chr19:17810209-17810427:+|2.2506602683828447|0.1577247637628512|3.83|482.0|14|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2375793457031	2	492.240001	982.465449	-1.2638	-0.00062208	-3.829	-0.0018848	-5.0928	-0.0025069	492.2381328039033	32.957	0.27202	32.957	32.85	33.122	0					22	11	3	0	0	0	0.25109	1	11019	11019		55.504	7.5886	1	284260			7739	121	4283	4309	7898	7898					-0.026485137825602578
DRVSLLSLV	9	Unmodified	_DRVSLLSLV_					0	0	0			REV__nc|ENSG00000175575|Q9BRP4-3|PAAF1	REV__nc|ENSG00000175575|Q9BRP4-3|PAAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3030700683594	2	501.303124	1000.5917	-0.11229	-5.6293E-05	-2.9717	-0.0014897	-3.084	-0.001546	501.3014576726096	41.491	0.37376	41.491	41.444	41.818	0					36	18	3	0	0	0	0.27249	1	15784	15784		52.937	5.2794	1	266760	+		7740	16623	4284	4310	7899	7899					0.09142315994381534
DRWTPRGR	8	Unmodified	_DRWTPRGR_					0	0	0			REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2791748046875	2	522.278306	1042.54206	0.81773	0.00042708	2.6048	0.0013604	3.4225	0.0017875	522.2796560189832	27.198	0.23754	27.198	27.087	27.325	0					12	9	2	0	0	0	0.7126	1	8367	8367		31.955	1.4512	1	56149	+		7741	19601	4285	4311	7900	7900					0.022490458289212256
DSAAAGASRLL	11	Unmodified	_DSAAAGASRLL_					0	0	0		ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2809448242188	2	516.277638	1030.54072	0.78733	0.00040648	3.7844	0.0019538	4.5718	0.0023603	516.2798266000368	29.619	0.19994	29.619	29.539	29.739	0					8	5	2	0	0	0	0.69524	1	10016	10016		28.081	0.19925	1	58284			7742	6717	4286	4312	7901	7901					0.02667366949526695
DSAGERACK	9	Unmodified	_DSAGERACK_					0	0	0		ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.714111328125	2	468.713816	935.413079	0.62971	0.00029515	-0.66348	-0.00031098	-0.033769	-1.5828E-05	468.7135260936003	29.244	4.5868	29.244	29.104	33.69	0					235	103	5	0	0	0	0.55379	1	11887	11887		26.693	1.1189	1	27342000			7743	5334	4287	4313	7902	7902					-0.05721096916170154
DSAKTLVQK	9	Unmodified	_DSAKTLVQK_					0	0	0			REV__SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	REV__SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2847900390625	2	495.284931	988.55531	0.70286	0.00034812	-1.3344	-0.0006609	-0.63152	-0.00031278	495.28450531955025	24.554	0.3155	24.554	24.447	24.762	0					12	6	3	0	0	0	0.11898	1	8616	8616		75.043	2.1641	1	1258800	+		7744	17047	4288	4314	7903	7903					0.06057439097673978
DSALHGPIF	9	Unmodified	_DSALHGPIF_					0	0	0		CNTN4|p.T22A|1|0.13|ENSG00000144619|chr3:2736223-2736223|A/G|missense_variant	CNTN4|p.T22A|1|0.13|ENSG00000144619|chr3:2736223-2736223|A/G|missense_variant	CNTN4|p.T22A|1|0.13|ENSG00000144619|chr3:2736223-2736223|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.74700927734375	2	478.745442	955.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.964	1	41.964	41.464	42.464	0								0	0	0	0.34907	1	13397	13397		25.45	1.2474	1				7745	578	4289	4315	7904	7904					-0.003187881366216061
DSALLLLQK	9	Unmodified	_DSALLLLQK_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3031311035156	2	500.8055	999.596446	-1.0743	-0.00053803	-0.79288	-0.00039708	-1.8672	-0.00093511	500.8059573809268	25.535	0.26324	25.535	25.392	25.655	0					16	9	2	0	0	0	0.18605	1	7979	7979		63.306	2.3343	1	399520			7746	1610	4290	4316	7905	7905					0.09663200137151762
DSAVDVQEFM	10	Unmodified	_DSAVDVQEFM_					0	0	0		tr|U7T4A7|U7T4A7_FUSNUEnolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=enoPE=3SV=1	tr|U7T4A7|U7T4A7_FUSNUEnolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=enoPE=3SV=1	tr|U7T4A7|U7T4A7_FUSNUEnolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=enoPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.7498168945312	2	570.747521	1139.48049	1.2665	0.00072287	2.5353	0.001447	3.8018	0.0021699	570.7491999267768	31.787	0.12896	31.787	31.677	31.806	0					5	3	2	0	0	0	0.63019	1	10982	10982		25.574	0	1	60737			7747	22989	4291	4317	7906	7906					-0.08367111495886093
DSDADYDELD	10	Unmodified	_DSDADYDELD_					0	0	0			REV__RYR2|p.K1745Nfs*25|1|0.49|ENSG00000198626|chr1:237614358-237614358|A/-|frameshift_variant;REV__RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant	REV__RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.2098999023438	2	579.20948	1156.40441	0.58114	0.0003366	0.53815	0.0003117	1.1193	0.0006483	579.2096895979579	29.579	0.16417	29.579	29.502	29.666	0					7	4	2	0	0	0	0.64178	1	9977	9977		29.15	4.6304	1	159100	+		7748	21483;17412	4292	4318	7907	7907					-0.16753836862335447
DSDGDKSDDNL	11	Unmodified	_DSDGDKSDDNL_					0	0	0		ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.7352905273438	2	590.733654	1179.45275	3.1812	0.0018792	-0.39736	-0.00023473	2.7838	0.0016445	590.733481432477	49.889	0.43395	49.889	49.709	50.143	0					56	19	4	0	0	0	0.75295	1	19670	19670		22.58	22.58	1	765820			7749	7395	4293	4319	7908	7908					-0.12979343222423267
DSDPNPLAPTF	11	Unmodified	_DSDPNPLAPTF_					0	0	0		ENST00000602477.1_1_1:9299915-9300071:+|nuORF	ENST00000602477.1_1_1:9299915-9300071:+|nuORF	ENST00000602477.1_1_1:9299915-9300071:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.2737426757812	2	587.274761	1172.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.04	1	35.04	34.54	35.54	0								0	0	0	0.30675	1	13550	13550		51.193	9.7661	1				7750	11046	4294	4320	7909	7909					-0.044397763528195355
DSEADRPKGL	10	Unmodified	_DSEADRPKGL_					0	0	0		NAP1L2|p.Y327Vfs*6|1|0.04|ENSG00000186462|chrX:73213514-73213515|-/C|frameshift_variant;ENSG00000186462|ENST00000373517|NAP1L2	NAP1L2|p.Y327Vfs*6|1|0.04|ENSG00000186462|chrX:73213514-73213515|-/C|frameshift_variant	NAP1L2|p.Y327Vfs*6|1|0.04|ENSG00000186462|chrX:73213514-73213515|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2754516601562	2	544.272552	1086.53055	0.32504	0.00017691	2.4383	0.0013271	2.7633	0.001504	544.2748399962423	24.748	0.71525	24.748	24.677	25.392	0					28	14	3	0	0	0	0.56931	1	8897	8897		37.812	3.639	1	231710			7751	7139	4295	4321	7910	7910					-0.009252407757003311
DSEALHVL	8	Unmodified	_DSEALHVL_					0	0	0		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.2294616699219	2	442.229625	882.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.113	1	31.113	30.613	31.613	0								0	0	0	1.7419	1	9976	9976		54.765	0	1				7752	3147	4296	4322	7911	7911					-0.0012278089058099795
DSEGSTKVL	9	Unmodified	_DSEGSTKVL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2374572753906	2	468.237647	934.460741	0.30324	0.00014199	-0.26301	-0.00012315	0.040229	1.8837E-05	468.2376113199126	19.129	0.52666	19.129	18.965	19.492	0					27	12	4	0	0	0	0.078509	1	5727	5727		85.161	10.118	1	4804000			7753	7094	4297	4323	7912	7912					-0.00911119444333508
DSEGSTKVL	9	Unmodified	_DSEGSTKVL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2374572753906	2	468.237647	934.460741	3.973	0.0018603	-3.3335	-0.0015609	0.6395	0.00029944	468.23619663248064	18.827	0.26859	18.827	18.686	18.954	0					15	8	3	0	0	0	0.10915	1	4988	4988		77.318	3.0625	1	434400			7754	7094	4297	4323	7913	7913					-0.00911119444333508
DSEGSTKVL	9	Unmodified	_DSEGSTKVL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2376708984375	2	468.237647	934.460741	-0.12895	-6.0381E-05	0.31971	0.0001497	0.19076	8.9321E-05	468.23785234644004	19.042	0.46248	19.042	18.934	19.396	0					20	9	4	0	0	0	0.27249	1	5960	5960		52.937	0.63753	1	6766200			7755	7094	4297	4323	7914	7914					-0.00911119444333508
DSEGSTKVL	9	Unmodified	_DSEGSTKVL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2381286621094	2	468.237647	934.460741	-0.20301	-9.5056E-05	0.59944	0.00028068	0.39643	0.00018562	468.23800553611875	18.905	0.27899	18.905	18.73	19.009	0					13	6	3	0	0	0	0.07136	1	5016	5016		87.696	4.4093	1	592520			7756	7094	4297	4323	7915	7915					-0.00911119444333508
DSEGSTKVL	9	Unmodified	_DSEGSTKVL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2372741699219	2	468.237647	934.460741	0.58548	0.00027414	-1.1453	-0.00053628	-0.55983	-0.00026213	468.23718450925554	19.039	0.46435	19.039	18.929	19.394	0					13	9	2	0	0	0	0.16806	1	5824	5824		65.465	3.358	1	915350			7757	7094	4297	4323	7916	7916					-0.00911119444333508
DSEHTRRK	8	Unmodified	_DSEHTRRK_					0	0	0		ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;CNTROB|p.L713Cfs*27|1|0.4|ENSG00000170037|chr17:7947710-7947710|T/-|frameshift_variant;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.5140380859375	3	343.512578	1027.5159	0.67956	0.00023344	3.1828	0.0010933	3.8623	0.0013268	343.51375787985415	12.931	0.082598	12.931	12.895	12.978	0					4	2	2	0	0	0	0.74117	1	2837	2837		23.042	0	1	117290			7758	584	4298	4324	7917	7917					0.0032473186679453647
DSELRKGIV	9	Unmodified	_DSELRKGIV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.52935791015625	3	339.529346	1015.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.87	1	19.87	19.37	20.37	0								0	0	0	0.28666	1	6353	6353		37.812	5.061	1				7759	5134;11594	4299	4325	7918	7918					0.05904841471954114
DSESEETL	8	Unmodified	_DSESEETL_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;RFC1|p.N81Mfs*61|1|0.3|ENSG00000035928|chr4:39342434-39342434|T/-|frameshift_variant;ENST00000504849.5_1_4:39324953-39367861:-|nuORF	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.1882629394531	2	455.18782	908.361086	0.87823	0.00039976	-0.10656	-4.8503E-05	0.77167	0.00035126	455.18777072373206	18.116	0.85313	18.116	17.915	18.768	0					47	17	5	0	0	0	0.65276	1	5323	5323		40.573	40.573	1	7651500			7760	1170	4300	4326	7919	7919					-0.0967598184893177
DSFGIRAKK	9	Unmodified	_DSFGIRAKK_					0	0	0		ZHX1|p.T668Nfs*3|1|0.48|ENSG00000165156|chr8:123253944-123253945|-/T|frameshift_variant;ZHX1|p.T668Hfs*37|1|0.1|ENSG00000165156|chr8:123253945-123253945|T/-|frameshift_variant;ENSG00000165156|ENST00000395571|ZHX1	ZHX1|p.T668Nfs*3|1|0.48|ENSG00000165156|chr8:123253944-123253945|-/T|frameshift_variant	ZHX1|p.T668Nfs*3|1|0.48|ENSG00000165156|chr8:123253944-123253945|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.29241943359375	2	511.293091	1020.57163	-0.43688	-0.00022338	-1.1085	-0.00056676	-1.5454	-0.00079014	511.2925730620971	29.843	0.21539	29.843	29.734	29.949	0					8	4	3	0	0	0	0.44593	1	11103	11103		37.812	2.6108	1	326670			7761	5767	4301	4327	7920	7920					0.06216565054421608
DSFPYLRGL	9	Unmodified	_DSFPYLRGL_					0	0	0		ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2798461914062	2	534.279649	1066.54475	0.51233	0.00027373	0.18171	9.7085E-05	0.69404	0.00037081	534.27957460928	35.778	0.16647	35.778	35.713	35.879	0					14	8	2	0	0	0	0.37197	1	11732	11732		44.117	2.6902	1	114860			7762	4834	4302	4328	7921	7921					0.014134564432424668
DSFRSDPVHR	10	Unmodified	_DSFRSDPVHR_					0	0	0			REV__sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2	REV__sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	608.2965087890625	2	608.296893	1214.57923	-0.61674	-0.00037516	-1.2097	-0.00073584	-1.8264	-0.001111	608.2966773628048	26.019	0.25517	26.019	25.93	26.185	0					15	8	3	0	0	0	0.59277	1	8127	8127		35.152	0	1	109880	+		7763	21571	4303	4329	7922	7922					-0.01947327415973632
DSGAARRDR	9	Unmodified	_DSGAARRDR_					0	0	0			REV__nc|ENSG00000163359|P12111-4|COL6A3	REV__nc|ENSG00000163359|P12111-4|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.256103515625	2	502.255028	1002.4955	2.926	0.0014696	-0.85016	-0.000427	2.0759	0.0010426	502.2547707883829	21.75	0.51665	21.75	21.355	21.871	0					27	10	3	0	0	0	0.19605	1	7147	7147		62.107	62.107	1	633010	+		7764	12565	4304	4330	7923	7923					-0.00564438793003319
DSGLAAYVAK	10	Unmodified	_DSGLAAYVAK_					0	0	0		ENSG00000101323|ENST00000378789|HAO1	ENSG00000101323|ENST00000378789|HAO1	ENSG00000101323|ENST00000378789|HAO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7635192871094	2	497.763832	993.513111	-0.7184	-0.00035759	0.71054	0.00035368	-0.0078626	-3.9137E-06	497.764069697374	24.015	0.41582	24.015	23.732	24.147	0					19	8	3	0	0	0	0.24256	1	8245	8245		74.255	7.8258	1	540860			7765	2109	4305	4331	7924	7924					0.01609463689283075
DSGLLWAY	8	Unmodified	_DSGLLWAY_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.2289733886719	2	462.726718	923.438883	0.11126	5.1481E-05	-2.5746	-0.0011913	-2.4634	-0.0011399	462.7243424633052	28.14	0.29851	28.14	28.017	28.316	0					26	10	3	0	0	0	0.67475	1	8785	8785		37.028	3.5129	1	272050	+		7766	15143	4306	4332	7925	7925					-0.025898794022396032
DSGRHHLHL	9	Unmodified	_DSGRHHLHL_					0	0	0			REV__ENST00000445028.1_1_X:43137608-43138196:-|nuORF	REV__ENST00000445028.1_1_X:43137608-43138196:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2783813476562	2	536.275764	1070.53697	0.29202	0.00015661	3.7403	0.0020058	4.0323	0.0021624	536.2779289889542	14.209	0.21239	14.209	14.15	14.362	0					7	4	2	0	0	0	0.49003	1	3647	3647		33.516	6.8227	1	463940	+		7767	19270	4307	4333	7926	7926					0.004527419663190813
DSGRYGLVV	9	Unmodified	_DSGRYGLVV_					0	0	0		MYOM1|p.K1643R|1|0.41|ENSG00000101605|chr18:3067392-3067392|T/C|missense_variant	MYOM1|p.K1643R|1|0.41|ENSG00000101605|chr18:3067392-3067392|T/C|missense_variant	MYOM1|p.K1643R|1|0.41|ENSG00000101605|chr18:3067392-3067392|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.25592041015625	2	483.256174	964.497795	-0.15875	-7.6717E-05	-0.27577	-0.00013327	-0.43452	-0.00020998	483.2560583605853	29.566	0.42205	29.566	29.351	29.773	0					21	10	4	0	0	0	0.36892	1	10581	10581		44.377	0.26039	1	562870			7768	11399	4308	4334	7927	7927					0.01412596892100737
DSGTPAPEHNE	11	Unmodified	_DSGTPAPEHNE_					0	0	0		ENST00000562235.5_1_16:67262534-67263013:+|nuORF;ENST00000563271.5_1_16:67262538-67263013:+|nuORF;ENST00000567193.5_1_16:67262538-67263013:+|nuORF;ENSG00000168701|ENST00000304800|TMEM208	ENST00000562235.5_1_16:67262534-67263013:+|nuORF	ENST00000562235.5_1_16:67262534-67263013:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.2407836914062	2	577.241449	1152.46835	-0.072255	-4.1708E-05	-0.75277	-0.00043453	-0.82503	-0.00047624	577.2411116245987	14.585	0.21174	14.585	14.522	14.734	0					13	5	4	0	0	0	0.79221	1	3607	3607		16.717	0	1	299250			7769	6111	4309	4335	7928	7928					-0.10179011914715375
DSGYFPNEL	9	Unmodified	_DSGYFPNEL_					0	0	0		ENST00000498554.5_1_19:2097388-2099029:+|nuORF	ENST00000498554.5_1_19:2097388-2099029:+|nuORF	ENST00000498554.5_1_19:2097388-2099029:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.230712890625	2	521.229822	1040.44509	1.5145	0.00078938	2.0095	0.0010474	3.5239	0.0018368	521.2310310855707	41.755	0.18771	41.755	41.678	41.866	0					16	9	3	0	0	0	0.2873	1	15848	15848		51.335	5.3835	1	128690			7770	10138	4310	4336	7929	7929					-0.07351405961367163
DSHNSAAF	8	Unmodified	_DSHNSAAF_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.6801452636719	2	424.680299	847.346045	0.37423	0.00015893	-0.81476	-0.00034601	-0.44053	-0.00018709	424.67988343122215	20.942	0.45847	20.942	20.798	21.256	0					11	9	2	0	0	0	0.59411	1	6859	6859		50.025	14.824	1	220150	+		7771	15344	4311	4337	7930	7930					-0.08373384135620654
DSHSRHDSHSR	11	Unmodified	_DSHSRHDSHSR_					0	0	0			REV__nc|ENSG00000153922|O14646-2|CHD1	REV__nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	660.7944946289062	2	660.793037	1319.57152	1.4101	0.00093179	0.71658	0.00047351	2.1267	0.0014053	660.7935415395161	27.292	0.37262	27.292	27.182	27.555	0					38	13	4	0	0	0	0.12478	1	8663	8663		83.647	10.768	1	2343300	+		7772	15552	4312	4338	7931	7931					-0.075480866835278
DSIDVPISIK	10	Unmodified	_DSIDVPISIK_					0	0	0			REV__CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant	REV__CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8042602539062	2	543.805697	1085.59684	-1.4919	-0.00081133	-0.967	-0.00052586	-2.4589	-0.0013372	543.8051762278208	33.427	0.11828	33.427	33.374	33.493	0					5	3	2	0	0	0	0.5155	1	11727	11727		39.253	8.9351	1	93459	+		7773	12378	4313	4339	7932	7932					0.05746575066336845
DSIHATLEF	9	Unmodified	_DSIHATLEF_					0	0	0			REV__PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant	REV__PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2523193359375	2	516.753464	1031.49238	0.20406	0.00010545	-0.73165	-0.00037808	-0.52759	-0.00027264	516.753270939792	29.166	0.36479	29.166	29.059	29.424	0					26	7	4	0	0	0	0.43426	1	10738	10738		38.806	0	1	3042000	+		7774	17679	4314	4340	7933	7933					-0.022111266903721116
DSIILKRY	8	Unmodified	_DSIILKRY_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.521	1	44.521	44.021	45.021	0								0	0	0	1.7419	1	17326	17326		16.473	0	1		+		7775	21069	4315	4341	7934	7934					0.07810333339944009
DSIKLQPAR	9	Unmodified	_DSIKLQPAR_					0	0	0			REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.2012634277344	3	343.201341	1026.58219	0.50681	0.00017394	-0.72102	-0.00024746	-0.21421	-7.3516E-05	343.20115396999535	20.016	0.20736	20.016	19.903	20.11	0					11	4	4	0	0	0	0.59802	1	6150	6150		22.58	0.89391	1	336560	+		7776	14557	4316	4342	7935	7935					0.0699654770885445
DSIKSHVL	8	Unmodified	_DSIKSHVL_					0	0	0			REV__SYNDIG1-MYH9|1|fusion	REV__SYNDIG1-MYH9|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.753662109375	2	449.753267	897.491981	0.54443	0.00024486	-0.49152	-0.00022106	0.052906	2.3795E-05	449.7530878269121	20.404	0.16239	20.404	20.321	20.483	0					10	5	3	0	0	0	0.53424	1	5457	5457		56.721	1.9447	1	167170	+		7777	21616	4317	4343	7936	7936					0.03913498380427427
DSISKILPI	9	Unmodified	_DSISKILPI_					0	0	0			REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF	REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.3004455566406	2	493.30005	984.585547	0.0025223	1.2442E-06	0.064197	3.1668E-05	0.066719	3.2913E-05	493.3000350831275	36.727	0.19844	36.727	36.637	36.835	0					13	9	2	0	0	0	0.53064	1	13139	13139		21.96	0	1	109730	+		7778	14424	4318	4344	7937	7937					0.09263797762878312
DSKEDSDASNS	11	Unmodified	_DSKEDSDASNS_					0	0	0			REV__ENST00000426868.6_1_13:38211042-38213329:-|nuORF	REV__ENST00000426868.6_1_13:38211042-38213329:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.7249145507812	2	577.725829	1153.4371	-0.069428	-4.0111E-05	-1.6095	-0.00092985	-1.6789	-0.00096996	577.7248098187301	13.702	0.16953	13.702	13.613	13.782	0					6	4	2	0	0	0	0.79221	1	3185	3185		16.717	0.24424	1	787560	+		7779	14695	4319	4345	7938	7938					-0.13347629739450895
DSKLSLVL	8	Unmodified	_DSKLSLVL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.76568603515625	2	437.765843	873.517133	0.70182	0.00030723	-1.294	-0.00056649	-0.59222	-0.00025926	437.76520113802235	35.327	0.29372	35.327	35.25	35.544	0					14	8	3	0	0	0	0.46905	1	13703	13703		63.306	0	1	314000			7780	7088	4320	4346	7939	7939					0.07531553182980133
DSKNHPEV	8	Unmodified	_DSKNHPEV_					0	0	0		nc|ENSG00000148848|O43184-3|ADAM12;nc|ENSG00000148848|O43184-4|ADAM12;nc|ENSG00000148848|O43184-2|ADAM12;ADAM12|p.L804Pfs*27|1|0.37|ENSG00000148848|chr10:126036273-126036274|-/G|frameshift_variant;ADAM12|p.Q855Sfs*55|1|0.44|ENSG00000148848|chr10:126019802-126019803|-/G|frameshift_variant;ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12	nc|ENSG00000148848|O43184-3|ADAM12	nc|ENSG00000148848|O43184-3|ADAM12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2229919433594	2	463.222331	924.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.181	1	47.181	46.681	47.681	0								0	0	0	1.7419	1	17339	17339		37.159	1.5408	1				7781	49	4321	4347	7940	7940					-0.03512853038716912
DSKVIGQK	8	Unmodified	_DSKVIGQK_					0	0	0			REV__GGA1|p.R485Gfs*31|1|0.44|ENSG00000100083|chr22:37631018-37631018|C/-|frameshift_variant	REV__GGA1|p.R485Gfs*31|1|0.44|ENSG00000100083|chr22:37631018-37631018|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7530517578125	2	437.753267	873.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.796	1	19.796	19.296	20.296	0								0	0	0	1.7419	1	5446	5446		60.972	2.19	1		+		7782	13512	4322	4348	7941	7941					0.050174983804254225
DSLATAGVL	9	Unmodified	_DSLATAGVL_					0	0	0			REV__CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant	REV__CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.7317810058594	2	423.732	845.449448	0.96798	0.00041016	-1.2194	-0.00051669	-0.25139	-0.00010652	423.7314771349333	28.49	0.24709	28.49	28.407	28.655	0					8	6	2	0	0	0	0.25109	1	10085	10085		55.504	4.1688	1	250440	+		7783	12326	4323	4349	7942	7942					0.020541032522032765
DSLATVKVVL	10	Unmodified	_DSLATVKVVL_					0	0	0		ENSG00000164675|ENST00000324698|IQUB;IQUB|p.I180Ffs*8|1|0.51|ENSG00000164675|chr7:123503358-123503358|T/-|frameshift_variant;ENST00000483567.1_1_7:123143235-123152394:-|nuORF;nc|ENSG00000164675|Q8NA54-2|IQUB	ENSG00000164675|ENST00000324698|IQUB	ENSG00000164675|ENST00000324698|IQUB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8192138671875	2	522.818607	1043.62266	0.086528	4.5239E-05	0.86726	0.00045342	0.95379	0.00049866	522.8189881830332	29.166	0.25031	29.166	29.073	29.324	0					13	6	3	0	0	0	0.33468	1	10378	10378		60.118	8.9256	1	482470			7784	5716	4324	4350	7943	7943					0.10259469308630287
DSLIAVQLI	9	Unmodified	_DSLIAVQLI_					0	0	0		XKR3|p.S385N|1|0.3|ENSG00000172967|chr22:16783845-16783845|C/T|missense_variant;ENSG00000172967|ENST00000684488|XKR3	XKR3|p.S385N|1|0.3|ENSG00000172967|chr22:16783845-16783845|C/T|missense_variant	XKR3|p.S385N|1|0.3|ENSG00000172967|chr22:16783845-16783845|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7947998046875	2	486.292225	970.569897	-0.24083	-0.00011711	1.346	0.00065453	1.1051	0.00053742	486.2926823587607	40.689	0.19237	40.689	40.627	40.819	0					23	10	3	0	0	0	0.24095	1	14428	14428		56.721	0.28726	1	188740			7785	6400	4325	4351	7944	7944					0.08343511245811897
DSLLQIII	8	Unmodified	_DSLLQIII_					0	0	0			REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF	REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.781494140625	2	457.781493	913.548434	0.87932	0.00040254	-1.1148	-0.00051032	-0.23544	-0.00010778	457.78100148741163	40.18	0.21944	40.18	40.048	40.268	0					9	5	2	0	0	0	0.61938	1	15930	15930		45.952	5.3793	1	147590	+		7786	15066	4326	4352	7945	7945					0.08820126217108282
DSLQLQRA	8	Unmodified	_DSLQLQRA_					0	0	0			REV__ENST00000563240.1_1_15:34653546-34654988:-|nuORF	REV__ENST00000563240.1_1_15:34653546-34654988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7531433105469	2	465.753798	929.493044	-0.56196	-0.00026173	-0.9143	-0.00042584	-1.4763	-0.00068757	465.75366466612917	20.784	0.36808	20.784	20.558	20.927	0					11	8	2	0	0	0	0.58597	1	5903	5903		51.335	0.14276	1	155440	+		7787	16654	4327	4353	7946	7946					0.025477127493331864
DSLQRIGTK	9	Unmodified	_DSLQRIGTK_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2884216308594	2	509.288005	1016.56146	-0.51487	-0.00026222	1.1892	0.00060563	0.6743	0.00034341	509.28849296196074	15.144	0.21325	15.144	15.033	15.246	0					15	9	2	0	0	0	0.090954	1	3406	3406		85.161	32.224	1	84050			7788	1542	4328	4354	7947	7947					0.053839573292066234
DSLRVATI	8	Unmodified	_DSLRVATI_					0	0	0			REV__nc|ENSG00000103154|Q7Z6G3-2|NECAB2	REV__nc|ENSG00000103154|Q7Z6G3-2|NECAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7530212402344	2	437.753267	873.491981	-0.39312	-0.00017209	-0.40953	-0.00017927	-0.80265	-0.00035136	437.75306975142036	30.271	0.17155	30.271	30.195	30.366	0					6	4	2	0	0	0	0.59773	1	10911	10911		49.442	3.4693	1	77140	+		7789	13666	4329	4355	7948	7948					0.050174983804254225
DSLVEHDE	8	Unmodified	_DSLVEHDE_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2024230957031	2	472.203804	942.393055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.956	1	43.956	43.456	44.456	0								0	0	0	1.7419	1	17612	17612		42.474	0.078325	1				7790	2459	4330	4356	7949	7949					-0.0804456937513578
DSLYGPQGTY	10	Unmodified	_DSLYGPQGTY_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7490844726562	2	550.748379	1099.4822	1.8158	0.001	-0.20309	-0.00011185	1.6127	0.00088819	550.7481740901363	39.692	0.19398	39.692	39.602	39.796	0					6	4	2	0	0	0	0.31613	1	15718	15718		65.465	7.2355	1	138070	+		7791	17426	4331	4357	7950	7950					-0.06355734415592451
DSLYKRKY	8	Unmodified	_DSLYKRKY_					0	0	0			REV__nc|ENSG00000241399|Q8IX05-2|CD302	REV__nc|ENSG00000241399|Q8IX05-2|CD302	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.79150390625	2	536.792924	1071.57129	-0.44073	-0.00023658	-3.9339	-0.0021117	-4.3746	-0.0023483	536.7918528002212	29.615	0.11533	29.615	29.538	29.653	0					6	4	2	0	0	0	0.72381	1	9656	9656		30.504	2.6214	1	73484	+		7792	17687	4332	4358	7951	7951					0.03837145334568959
DSMVLAILGKG	11	Unmodified	_DSMVLAILGKG_					0	0	0		ENSG00000183960|ENST00000328405|KCNH8	ENSG00000183960|ENST00000328405|KCNH8	ENSG00000183960|ENST00000328405|KCNH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3101806640625	2	552.310092	1102.60563	0.46208	0.00025521	0.62867	0.00034722	1.0907	0.00060243	552.3102853471042	32.722	0.20667	32.722	32.61	32.817	0					9	5	2	0	0	0	0.37008	1	12477	12477		54.776	0.053964	1	98450			7793	6992	4333	4359	7952	7952					0.058432254311583165
DSNLSVVKK	9	Unmodified	_DSNLSVVKK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2842102050781	2	495.284931	988.55531	0.74291	0.00036795	-2.6455	-0.0013103	-1.9025	-0.0009423	495.28349720109003	47.809	0.16411	47.809	47.73	47.894	0					16	10	2	0	0	0	0.54267	1	17485	17485		27.882	2.4321	1	53515			7794	5044;7071	4334	4360	7953	7953					0.06057439097673978
DSNTANHN	8	Unmodified	_DSNTANHN_					0	0	0		CACNA1F|p.G604Afs*3|1|0.21|ENSG00000102001|chrX:49224860-49224860|C/-|frameshift_variant;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F	CACNA1F|p.G604Afs*3|1|0.21|ENSG00000102001|chrX:49224860-49224860|C/-|frameshift_variant	CACNA1F|p.G604Afs*3|1|0.21|ENSG00000102001|chrX:49224860-49224860|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.6795654296875	2	436.678288	871.342023	2.6675	0.0011648	-0.097617	-4.2627E-05	2.5699	0.0011222	436.6783220248707	49.889	0.55602	49.889	49.674	50.23	0					75	25	4	0	0	0	0.79294	1	19651	19651		15.642	1.8665	1	4772400			7795	349	4335	4361	7954	7954					-0.09879473629337099
DSNTPLLFAI	10	Unmodified	_DSNTPLLFAI_					0	0	0		ENST00000432432.6_1_2:95480778-95522914:-|nuORF;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P	ENST00000432432.6_1_2:95480778-95522914:-|nuORF	ENST00000432432.6_1_2:95480778-95522914:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.793212890625	2	545.792589	1089.57063	0.5058	0.00027606	1.0265	0.00056026	1.5323	0.00083632	545.7931666744254	13.457	0.062823	13.457	13.438	13.501	0					5	3	2	0	0	0	0.65051	1	2779	2779		28.081	1.3886	1	45045			7796	9509	4336	4362	7955	7955					0.029423058948623293
DSPAGKTNAL	10	Unmodified	_DSPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2509460449219	2	487.251089	972.487624	-0.22923	-0.00011169	-0.15411	-7.509E-05	-0.38334	-0.00018678	487.25099595840925	22.381	0.59314	22.381	22.157	22.75	0					33	13	3	0	0	0	0.46989	1	6608	6608		48.602	4.2244	1	890120			7797	3820	4337	4363	7956	7956					0.0002798916684696451
DSPAGKTNAL	10	Unmodified	_DSPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2508850097656	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.409	1	22.409	21.909	22.909	0								0	0	0	0.04026	1	7450	7450		93.598	8.6821	1				7798	3820	4337	4363	7957	7957					0.0002798916684696451
DSPFIAHI	8	Unmodified	_DSPFIAHI_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2347106933594	2	450.23471	898.454868	-0.28683	-0.00012914	0.097834	4.4048E-05	-0.189	-8.5093E-05	450.23478852821	29.778	0.21638	29.778	29.683	29.9	0					6	4	2	0	0	0	0.61433	1	11057	11057		46.766	2.2354	1	164580			7799	3551	4338	4364	7958	7958					0.001578268346634104
DSPVEGESN	9	Unmodified	_DSPVEGESN_					0	0	0			REV__nc|ENSG00000077157|O60237-2|PPP1R12B	REV__nc|ENSG00000077157|O60237-2|PPP1R12B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.1927795410156	2	467.193436	932.37232	-0.65656	-0.00030674	-0.2754	-0.00012866	-0.93196	-0.0004354	467.1932003335696	49.662	0.94299	49.662	49.418	50.361	0					130	41	4	0	0	0	0.61124	1	17839	17839		12.207	0.69583	1	3586100	+		7800	13257	4339	4365	7959	7959					-0.09657159754794975
DSRALVLSL	9	Unmodified	_DSRALVLSL_					0	0	0		VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant	VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant	VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.1939697265625	3	325.194075	972.560395	0.28863	9.3861E-05	-0.1871	-6.0845E-05	0.10153	3.3016E-05	325.1938870566798	21.873	0.15961	21.873	21.794	21.954	0					10	4	3	0	0	0	0.41354	1	6099	6099		47.657	0	1	664380			7801	23107	4340	4366	7960	7960					0.0730174296027144
DSRLPPPPTL	10	Unmodified	_DSRLPPPPTL_					0	0	0		BRPF3|p.K831R|1|0.29|ENSG00000096070|chr6:36213889-36213889|A/G|missense_variant	BRPF3|p.K831R|1|0.29|ENSG00000096070|chr6:36213889-36213889|A/G|missense_variant	BRPF3|p.K831R|1|0.29|ENSG00000096070|chr6:36213889-36213889|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.8075561523438	2	546.806031	1091.59751	3.8042	0.0020802	-2.3812	-0.0013021	1.423	0.00077809	546.8045960771725	44.174	0.17363	44.174	44.115	44.289	0					9	7	2	0	0	0	0.59277	1	17709	17709		35.152	0.97948	1	47402			7802	323	4341	4367	7961	7961					0.05537414506034111
DSSEVEKILQQ	11	Unmodified	_DSSEVEKILQQ_					0	0	0		NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant;NLRP13|p.F543Lfs*8|1|0.42|ENSG00000173572|chr19:55912188-55912188|A/-|frameshift_variant;ENSG00000173572|ENST00000342929|NLRP13	NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	638.3226318359375	2	638.324982	1274.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.654	1	20.654	20.154	21.154	0								0	0	0	0.45674	1	5567	5567		22.58	5.1116	1				7803	6436	4342	4368	7962	7962					0.009078359101977185
DSSGQKNGK	9	Unmodified	_DSSGQKNGK_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.7242431640625	2	460.725238	919.435923	-0.87277	-0.00040211	-0.8869	-0.00040862	-1.7597	-0.00081073	460.7248738681442	14.556	0.19164	14.556	14.486	14.677	0					12	8	2	0	0	0	0.59802	1	3165	3165		21.96	1.9631	1	215170	+		7804	16964	4343	4369	7963	7963					-0.027017545270496157
DSSKSVVI	8	Unmodified	_DSSKSVVI_					0	0	0		TBC1D8B|p.I360V|1|0.35|ENSG00000133138|chrX:106827212-106827212|A/G|missense_variant	TBC1D8B|p.I360V|1|0.35|ENSG00000133138|chrX:106827212-106827212|A/G|missense_variant	TBC1D8B|p.I360V|1|0.35|ENSG00000133138|chrX:106827212-106827212|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.7315979003906	2	417.732	833.449448	3.4051	0.0014224	-2.9704	-0.0012408	0.4347	0.00018159	417.73059620923993	27.461	0.21232	27.461	27.39	27.602	0					9	7	2	0	0	0	0.41701	1	8745	8745		68.787	2.9837	1	52639			7805	22516	4344	4370	7964	7964					0.026061032522079586
DSSLNLIQ	8	Unmodified	_DSSLNLIQ_					0	0	0			REV__PDILT|p.A345T|1|0.38|ENSG00000169340|chr16:20369575-20369575|C/T|missense_variant	REV__PDILT|p.A345T|1|0.38|ENSG00000169340|chr16:20369575-20369575|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2349853515625	2	445.234907	888.455261	0.59553	0.00026515	0.67523	0.00030064	1.2708	0.00056579	445.2351629663452	15.076	0.56232	15.076	14.941	15.503	0					30	13	3	0	0	0	0.58597	1	3805	3805		51.335	0	1	824860	+		7806	16309	4345	4371	7965	7965					0.00657201763874582
DSTALHKL	8	Unmodified	_DSTALHKL_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7449645996094	2	442.745442	883.476331	0.75067	0.00033235	-1.49	-0.00065968	-0.73931	-0.00032732	442.74475666504617	40.495	0.23138	40.495	40.439	40.67	0					8	5	2	0	0	0	0.41701	1	16095	16095		68.787	2.9837	1	162550	+		7807	13486	4346	4372	7966	7966					0.029932118633610116
DSTFNVFVGK	10	Unmodified	_DSTFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7841796875	2	557.282389	1112.55022	1.7187	0.00095781	-0.86834	-0.00048391	0.85037	0.0004739	557.2817172386325	43.755	0.25624	43.755	43.652	43.908	0					26	13	3	0	0	0	0.048505	1	17079	17079		120.87	40.929	1	183030			7808	3276	4347	4373	7967	7967					-0.001548647649542545
DSTFNVFVGK	10	Unmodified	_DSTFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2830200195312	2	557.282389	1112.55022	1.824	0.0010165	-1.1818	-0.00065858	0.64223	0.0003579	557.2816643433799	43.682	0.22153	43.682	43.591	43.813	0					14	6	3	0	0	0	0.019305	1	17491	17491		138.06	71.633	1	166950			7809	3276	4347	4373	7968	7968					-0.001548647649542545
DSTFNVFVGK	10	Unmodified	_DSTFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.282958984375	2	557.282389	1112.55022	3.4942	0.0019473	-1.5852	-0.00088341	1.909	0.0010639	557.2809270375265	43.697	0.32308	43.697	43.579	43.902	0					17	9	3	0	0	0	0.01242	1	17482	17482		146.79	36.666	1	292610			7810	3276	4347	4373	7969	7969					-0.001548647649542545
DSTLGSSKET	10	Unmodified	_DSTLGSSKET_					0	0	0		NUTM1|p.Q931Kfs*53|1|0.37|ENSG00000184507|chr15:34356879-34356879|C/-|frameshift_variant;nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1	NUTM1|p.Q931Kfs*53|1|0.37|ENSG00000184507|chr15:34356879-34356879|C/-|frameshift_variant	NUTM1|p.Q931Kfs*53|1|0.37|ENSG00000184507|chr15:34356879-34356879|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7420043945312	2	512.743293	1023.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.336	1	36.336	35.836	36.836	0								0	0	0	0.4162	1	12313	12313		25.574	0.12388	1				7811	7020	4348	4374	7970	7970					-0.03876342140847555
DSTLIMQLLR	10	Oxidation (M)	_DSTLIM(Oxidation (M))QLLR_		DSTLIM(1)QLLR		DSTLIM(75)QLLR	0	0	1		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG;nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN;ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENSG00000134308|ENST00000238081|YWHAQ;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ	ENSG00000128245|ENST00000248975|YWHAH;nc|ENSG00000175793|P31947-2|SFN;ENSG00000166913|ENST00000353703|YWHAB;ENSG00000134308|ENST00000238081|YWHAQ;nc|ENSG00000108953|P62258-2|YWHAE;ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	603.3325805664062	2	603.331556	1204.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.638	1	53.638	53.138	54.138	0								0	0	0	0.12385	1	17152	17152		75.043	18.61	1				7812	5946;5741;3531;3911;2558;6576	4349	4375	7971	7971		110			0.05441995488581597
DSTLTGEQTM	10	Oxidation (M)	_DSTLTGEQTM(Oxidation (M))_		DSTLTGEQTM(1)		DSTLTGEQTM(44)	0	0	1			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.736572265625	2	549.734611	1097.45467	3.7686	0.0020717	-0.91146	-0.00050106	2.8571	0.0015707	549.7340821834711	47.782	1.0475	47.782	47.266	48.314	0					108	56	2	0	0	0	0.50881	1	19097	19097		44.377	44.377	1	164230	+		7813	13946	4350	4376	7972	7972		529			-0.09016005738158128
DSTLVNVLV	9	Unmodified	_DSTLVNVLV_					0	0	0			REV__ENST00000494893.5_1_2:27594167-27597059:+|nuORF	REV__ENST00000494893.5_1_2:27594167-27597059:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2734680175781	2	480.274032	958.533512	-0.30323	-0.00014563	-0.36749	-0.0001765	-0.67072	-0.00032213	480.2737701576772	33.777	0.54677	33.777	33.493	34.039	0					37	15	3	0	0	0	0.25716	1	11968	11968		54.776	7.119	1	1807100	+		7814	14102	4351	4377	7973	7973					0.05258634349104341
DSTNLSRLK	9	Unmodified	_DSTNLSRLK_					0	0	0			REV__ACSM1|p.K258N|1|0.28|ENSG00000166743|chr16:20669965-20669965|C/A|missense_variant	REV__ACSM1|p.K258N|1|0.28|ENSG00000166743|chr16:20669965-20669965|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7896118164062	2	517.285463	1032.55637	4.6975	0.00243	0.15369	7.9502E-05	4.8512	0.0025095	517.2854977834693	21.613	0.28252	21.613	21.52	21.803	0					19	8	4	0	0	0	0.42902	1	6214	6214		39.253	1.4413	1	420000	+		7815	12052	4352	4378	7974	7974					0.04139653466540949
DSTRMLLGQ	9	Unmodified	_DSTRMLLGQ_					0	0	0			REV__ENST00000233336.6_1_2:113288860-113289121:+|nuORF	REV__ENST00000233336.6_1_2:113288860-113289121:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7607727050781	2	510.760766	1019.50698	-0.42917	-0.0002192	0.12663	6.4675E-05	-0.30254	-0.00015453	510.76100294604237	22.592	0.2089	22.592	22.485	22.693	0					10	4	3	0	0	0	0.019882	1	7655	7655		122.18	7.3177	1	1020900	+		7816	17918	4353	4379	7975	7975					-0.001993778138626112
DSTSLEPSE	9	Unmodified	_DSTSLEPSE_					0	0	0		ENST00000537175.1_1_12:16553488-16553881:-|nuORF	ENST00000537175.1_1_12:16553488-16553881:-|nuORF	ENST00000537175.1_1_12:16553488-16553881:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7076721191406	2	482.708919	963.403285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.566	1	14.566	14.066	15.066	0								0	0	0	0.37821	1	3017	3017		17.365	2.5001	1				7817	10497	4354	4380	7976	7976					-0.0798800644054154
DSTTGFLGKT	10	Unmodified	_DSTTGFLGKT_					0	0	0		ENSG00000105829|ENST00000222547|BET1	ENSG00000105829|ENST00000222547|BET1	ENSG00000105829|ENST00000222547|BET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7592163085938	2	513.758746	1025.50294	1.1295	0.00058027	-1.2702	-0.00065258	-0.14075	-7.2311E-05	513.7583645951516	28.461	0.57099	28.461	28.004	28.575	0					26	14	3	0	0	0	0.49411	1	10069	10069		45.972	0.020292	1	248530			7818	2400	4355	4381	7977	7977					-0.00879144035934587
DSTWLESIY	9	Unmodified	_DSTWLESIY_					0	0	0			REV__TLR1|p.K70Nfs*2|1|0.37|ENSG00000174125|chr4:38798622-38798622|T/-|frameshift_variant	REV__TLR1|p.K70Nfs*2|1|0.37|ENSG00000174125|chr4:38798622-38798622|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.258056640625	2	557.258579	1112.50261	1.714	0.00095516	-1.0673	-0.00059476	0.64675	0.0003604	557.2581837180095	41.658	0.16088	41.658	41.589	41.75	0					11	6	2	0	0	0	0.43426	1	16373	16373		38.806	3.6054	1	95048	+		7819	16547	4356	4382	7978	7978					-0.04914563755801282
DSTWLESIY	9	Unmodified	_DSTWLESIY_					0	0	0			REV__TLR1|p.K70Nfs*2|1|0.37|ENSG00000174125|chr4:38798622-38798622|T/-|frameshift_variant	REV__TLR1|p.K70Nfs*2|1|0.37|ENSG00000174125|chr4:38798622-38798622|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2582397460938	2	557.258579	1112.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.669	1	41.669	41.169	42.169	0								0	0	0	0.12457	1	16590	16590		65.803	7.9919	1		+		7820	16547	4356	4382	7979	7979					-0.04914563755801282
DSVKVLLR	8	Unmodified	_DSVKVLLR_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.29327392578125	2	465.292559	928.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.928	1	11.928	11.428	12.428	0								0	0	0	1.7419	1	2562	2562		40.573	3.4135	1		+		7821	17847	4357	4383	7980	7980					0.1034235068552789
DSVLNLIKG	9	Unmodified	_DSVLNLIKG_					0	0	0			REV__CON__Q9TRI1	REV__CON__Q9TRI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7820739746094	2	479.782025	957.549496	-0.20692	-9.9279E-05	-0.72946	-0.00034998	-0.93639	-0.00044926	479.781982253877	32.418	0.76672	32.418	32.291	33.057	0					30	19	3	0	0	0	0.47038	1	11886	11886		35.618	0.46626	1	698500	+	+	7822	12621	4358	4384	7981	7981					0.06902340586009359
DSVSLRIKQ	9	Unmodified	_DSVSLRIKQ_					0	0	0		COG7|p.F587S|1|0.21|ENSG00000168434|chr16:23403737-23403737|A/G|missense_variant	COG7|p.F587S|1|0.21|ENSG00000168434|chr16:23403737-23403737|A/G|missense_variant	COG7|p.F587S|1|0.21|ENSG00000168434|chr16:23403737-23403737|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3028564453125	2	523.303655	1044.59276	0.76858	0.0004022	-3.1006	-0.0016226	-2.3321	-0.0012204	523.3014839359563	15.067	0.06844	15.067	15.023	15.092	0					6	3	2	0	0	0	0.2873	1	3209	3209		51.335	12.529	1	128360			7823	590	4359	4385	7982	7982					0.07224530363282611
DSWGLGVLL	9	Unmodified	_DSWGLGVLL_					0	0	0		ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.26141357421875	2	480.263468	958.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.903	1	36.903	36.403	37.403	0								0	0	0	0.25856	1	12090	12090		42.474	1.9018	1				7824	7891	4360	4386	7983	7983					0.031466690402339736
DSWKVNPRE	9	Unmodified	_DSWKVNPRE_					0	0	0			REV__ENST00000588059.5_1_18:61064418-61077532:-|nuORF	REV__ENST00000588059.5_1_18:61064418-61077532:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.7850952148438	2	565.783087	1129.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.956	1	31.956	31.456	32.456	0								0	0	0	0.1633	1	12001	12001		56.721	5.5284	1		+		7825	14246	4361	4387	7984	7984					-0.007972306761985237
DSYFFKRR	8	Unmodified	_DSYFFKRR_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2;REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000171914|ENST00000636159|TLN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.7903442382812	2	559.790715	1117.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.366	1	13.366	12.866	13.866	0								0	0	0	1.7419	1	3027	3027		12.959	0.75233	1		+		7826	16441;14901	4362	4388	7985	7985					0.01279680911648029
DSYPLYAIY	9	Unmodified	_DSYPLYAIY_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7681884765625	2	552.76604	1103.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.803	1	37.803	37.303	38.303	0								0	0	0	0.19085	1	14806	14806		52.299	10.873	1				7827	4590	4363	4389	7986	7986					-0.03009071887800019
DSYRRRRSL	9	Unmodified	_DSYRRRRSL_					0	0	0			REV__ENSG00000257704|ENST00000552360|INAFM1	REV__ENSG00000257704|ENST00000552360|INAFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.8353881835938	2	604.833977	1207.6534	3.0132	0.0018225	-0.1526	-9.23E-05	2.8605	0.0017302	604.8338021772952	20.868	0.41678	20.868	20.709	21.126	0					24	8	4	0	0	0	0.1424	1	6709	6709		63.306	2.3343	1	2971900	+		7828	17766	4364	4390	7987	7987					0.05788060466238676
DSYVLYVPF	9	Unmodified	_DSYVLYVPF_					0	0	0			REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF	REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7742309570312	2	551.776408	1101.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.58	1	38.58	38.08	39.08	0								0	0	0	0.29985	1	15180	15180		35.201	18.728	1		+		7829	12895	4365	4391	7988	7988					-0.008444815081702473
DTAAAPAARA	10	Unmodified	_DTAAAPAARA_					0	0	0		ENST00000376560.7_2_6:30524925-30525204:+|nuORF	ENST00000376560.7_2_6:30524925-30525204:+|nuORF	ENST00000376560.7_2_6:30524925-30525204:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7383728027344	2	457.738148	913.461744	-1.0095	-0.00046208	0.070372	3.2212E-05	-0.93911	-0.00042987	457.73811515868545	21.128	0.29007	21.128	21	21.291	0					17	9	2	0	0	0	0.66185	1	5998	5998		26.693	1.1189	1	402750			7830	9042	4366	4392	7989	7989					0.0015513971521841086
DTAALVKQL	9	Unmodified	_DTAALVKQL_					0	0	0			REV__ENST00000491292.5_1_2:128015174-128017132:-|nuORF	REV__ENST00000491292.5_1_2:128015174-128017132:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7818908691406	2	479.782025	957.549496	-0.48475	-0.00023258	-1.2194	-0.00058505	-1.7042	-0.00081763	479.7815995722656	29.641	0.3118	29.641	29.54	29.851	0					13	6	3	0	0	0	0.12239	1	10984	10984		74.255	0	1	305070	+		7831	15863	4367	4393	7990	7990					0.06902340585986622
DTAKAAGPL	9	Unmodified	_DTAKAAGPL_					0	0	0		ENSG00000112357|ENST00000318471|PEX7;nc|ENSG00000112357|O00628-2|PEX7	ENSG00000112357|ENST00000318471|PEX7	ENSG00000112357|ENST00000318471|PEX7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2320251464844	2	422.232168	842.449782	-0.33691	-0.00014225	0.285	0.00012034	-0.051909	-2.1918E-05	422.23219144151176	17.49	0.16776	17.49	17.379	17.547	0					5	3	2	0	0	0	0.39215	1	5069	5069		42.396	3.1433	1	248790			7832	2739	4368	4394	7991	7991					0.022255229720371972
DTAPVIHG	8	Unmodified	_DTAPVIHG_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1;CHL1|p.E1008Vfs*9|1|0.09|ENSG00000134121|chr3:394848-394849|-/TGTCATTTACT|frameshift_variant	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	405.2110290527344	2	405.211235	808.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.836	1	24.836	24.336	25.336	0								0	0	0	1.7419	1	7649	7649		28.254	9.9299	1				7833	3892	4369	4395	7992	7992					-0.003950327164716327
DTATLSGPR	9	Unmodified	_DTATLSGPR_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.23779296875	2	459.237981	916.461409	0.72214	0.00033164	-1.2838	-0.00058956	-0.56164	-0.00025793	459.2373533533564	26.024	0.31096	26.024	25.874	26.185	0					12	6	3	0	0	0	0.42902	1	9281	9281		39.253	0	1	618320			7834	1232	4370	4396	7993	7993					-0.00016280004615509824
DTEELRAKAVK	11	Unmodified	_DTEELRAKAVK_					0	0	0			REV__ENSG00000172053|ENST00000306125|QARS1	REV__ENSG00000172053|ENST00000306125|QARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	630.3505859375	2	630.351334	1258.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.027	1	27.027	26.527	27.527	0								0	0	0	0.45674	1	8566	8566		16.717	0.71061	1		+		7835	16447	4371	4397	7994	7994					0.06911838763653577
DTEKRKEEL	9	Unmodified	_DTEKRKEEL_					0	0	0			REV__nc|ENSG00000136100|Q86VN1-2|VPS36	REV__nc|ENSG00000136100|Q86VN1-2|VPS36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.20318603515625	3	383.203299	1146.58807	0.60308	0.0002311	-0.8078	-0.00030955	-0.20471	-7.8447E-05	383.20297622761456	15.104	0.41881	15.104	14.995	15.414	0					12	8	3	0	0	0	0.4966	1	3921	3921		40.058	16.68	1	1724800	+		7836	14847	4372	4398	7995	7995					0.020636014298588634
DTEVTGKK	8	Unmodified	_DTEVTGKK_					0	0	0		ENSG00000136824|ENST00000374793|SMC2;SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant;nc|ENSG00000136824|O95347-2|SMC2	ENSG00000136824|ENST00000374793|SMC2	ENSG00000136824|ENST00000374793|SMC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.23468017578125	2	439.234907	876.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.998	1	19.998	19.498	20.498	0								0	0	0	1.7419	1	5541	5541		40.573	7.057	1				7837	4112	4373	4399	7996	7996					0.012092017638678954
DTGPGGAQSPV	11	Unmodified	_DTGPGGAQSPV_					0	0	0		nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2	nc|ENSG00000008735|Q13387-2|MAPK8IP2	nc|ENSG00000008735|Q13387-2|MAPK8IP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2329406738281	2	493.232896	984.451239	-0.13123	-6.4727E-05	-0.46728	-0.00023048	-0.59851	-0.00029521	493.2329208419176	22.321	0.12697	22.321	22.279	22.406	0					6	3	2	0	0	0	0.3224	1	6305	6305		60.118	14.166	1	103520			7838	1021	4374	4400	7997	7997					-0.04160887729847218
DTGSHSVAQ	9	Unmodified	_DTGSHSVAQ_					0	0	0		AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|11|1|anti-sense	AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|11|1|anti-sense	AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|11|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2039489746094	2	451.204138	900.393724	0.64996	0.00029326	-1.156	-0.00052161	-0.50608	-0.00022835	451.20370318647304	17.063	0.17586	17.063	16.98	17.156	0					6	4	2	0	0	0	0.42902	1	4763	4763		39.253	0	1	166440			7839	123	4375	4401	7998	7998					-0.06045729935419786
DTGWVKAAI	9	Unmodified	_DTGWVKAAI_					0	0	0		ACSM4|p.D331Rfs*3|1|0.19|ENSG00000215009|chr12:7320788-7320789|-/A|frameshift_variant;ACSM4|p.F429Sfs*18|1|0.37|ENSG00000215009|chr12:7323537-7323537|T/-|frameshift_variant;ENSG00000215009|ENST00000399422|ACSM4	ACSM4|p.D331Rfs*3|1|0.19|ENSG00000215009|chr12:7320788-7320789|-/A|frameshift_variant	ACSM4|p.D331Rfs*3|1|0.19|ENSG00000215009|chr12:7320788-7320789|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7627258300781	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.202	1	41.202	40.702	41.702	0								0	0	0	0.27025	1	16373	16373		40.778	1.7567	1				7840	40	4376	4402	7999	7999					0.026257848974637454
DTILQALF	8	Unmodified	_DTILQALF_					0	0	0			REV__ROBO1|p.P29T|1|0.3|ENSG00000169855|chr3:79589827-79589827|G/T|missense_variant	REV__ROBO1|p.P29T|1|0.3|ENSG00000169855|chr3:79589827-79589827|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7595520019531	2	460.758018	919.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.7	1	40.7	40.2	41.2	0								0	0	0	1.7419	1	16180	16180		51.335	3.6781	1		+		7841	21470	4377	4403	8000	8000					0.03851266665958519
DTINLLASL	9	Unmodified	_DTINLLASL_					0	0	0		RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant;RYR2|p.A2213Lfs*22|1|0.28|ENSG00000198626|chr1:237633654-237633654|A/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant	RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.27337646484375	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.96	1	39.96	39.46	40.46	0								0	0	0	0.2591	1	13406	13406		42.396	0	1				7842	7580	4378	4404	8001	8001					0.05258634349092972
DTISLTERVN	10	Unmodified	_DTISLTERVN_					0	0	0			REV__tr|U7SVN4|U7SVN4_FUSNULipopolysaccharideexportsystemATP-bindingproteinLptBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01284PE=3SV=1	REV__tr|U7SVN4|U7SVN4_FUSNULipopolysaccharideexportsystemATP-bindingproteinLptBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01284PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.2030029296875	3	383.203299	1146.58807	0.27172	0.00010412	-1.095	-0.00041962	-0.82332	-0.0003155	383.20285151878267	14.968	0.089997	14.968	14.917	15.007	0					6	4	2	0	0	0	0.61187	1	3265	3265		24.232	3.1996	1	70887	+		7843	21996	4379	4405	8002	8002					0.02063601429836126
DTIVEDLGAI	10	Unmodified	_DTIVEDLGAI_					0	0	0			REV__ENST00000579735.1_1_18:1363209-1363299:-|nuORF	REV__ENST00000579735.1_1_18:1363209-1363299:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2743530273438	2	523.274229	1044.53391	0.76414	0.00039986	-0.44011	-0.0002303	0.32403	0.00016956	523.2738583984727	35.978	0.76661	35.978	35.798	36.564	0					122	38	5	0	0	0	0.51121	1	11751	11751		44.117	1.7207	1	13484000	+		7844	20446	4380	4406	8003	8003					0.013420092782780557
DTIWVPVL	8	Unmodified	_DTIWVPVL_					0	0	0			REV__ENST00000580983.1_1_17:56585520-56588860:-|nuORF	REV__ENST00000580983.1_1_17:56585520-56588860:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7659912109375	2	471.768386	941.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.382	1	29.382	28.882	29.882	0								0	0	0	1.7419	1	10487	10487		52.299	4.3836	1		+		7845	13873	4381	4407	8004	8004					0.049118570456244015
DTKCLQPPGD	10	Unmodified	_DTKCLQPPGD_					0	0	0			REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant	REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2509155273438	2	537.250231	1072.48591	-1.4195	-0.00076262	0.68037	0.00036553	-0.73912	-0.00039709	537.2513627571325	36.064	0.18412	36.064	35.948	36.133	0					9	6	2	0	0	0	0.59277	1	12882	12882		35.152	3.5178	1	56196	+		7846	12706	4382	4408	8005	8005					-0.047433879133905066
DTLEKSTI	8	Unmodified	_DTLEKSTI_					0	0	0			REV__tr|U7SIU5|U7SIU5_FUSNUArginine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=argSPE=3SV=1	REV__tr|U7SIU5|U7SIU5_FUSNUArginine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=argSPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.7428894042969	2	453.742565	905.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.3	1	28.3	27.8	28.8	0								0	0	0	1.7419	1	9111	9111		49.442	2.6751	1		+		7847	21719	4383	4409	8006	8006					0.01406068561061602
DTLLHSFQV	9	Unmodified	_DTLLHSFQV_					0	0	0		ENST00000527538.5_1_11:71164342-71170844:+|nuORF;ENST00000524949.5_1_11:71164342-71175189:+|nuORF;ENST00000533769.5_1_11:71164342-71177788:+|nuORF;ENST00000525245.1_1_11:71164408-71171979:+|nuORF;NADSYN1|p.G189Afs*28|1|0.09|ENSG00000172890|chr11:71473584-71473584|G/-|frameshift_variant;ENSG00000172890|ENST00000319023|NADSYN1	ENST00000527538.5_1_11:71164342-71170844:+|nuORF	ENST00000527538.5_1_11:71164342-71170844:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2760620117188	2	530.277106	1058.53966	0.43876	0.00023267	-3.0834	-0.001635	-2.6446	-0.0014024	530.2753595113873	22.915	0.1644	22.915	22.839	23.004	0					8	5	2	0	0	0	0.30841	1	6558	6558		49.536	1.5765	1	134020			7848	6391	4384	4410	8007	8007					0.012731525806202626
DTLRGTNPI	9	Unmodified	_DTLRGTNPI_					0	0	0		tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.76580810546875	2	493.766906	985.519259	0.024986	1.2337E-05	-0.40238	-0.00019868	-0.3774	-0.00018635	493.7663873942397	17.168	0.3174	17.168	16.999	17.316	0					12	9	2	0	0	0	0.42902	1	4267	4267		39.253	2.0937	1	39836			7849	22597	4385	4411	8008	8008					0.025919819208070294
DTLRSVSL	8	Unmodified	_DTLRSVSL_					0	0	0			REV__ENST00000520639.1_1_5:153873511-153874012:+|nuORF	REV__ENST00000520639.1_1_5:153873511-153874012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.75054931640625	2	445.750724	889.486896	-2.7457	-0.0012239	2.4075	0.0010731	-0.3382	-0.00015075	445.75181058141754	30.588	0.12711	30.588	30.494	30.621	0					5	3	2	0	0	0	0.61938	1	10441	10441		45.952	1.4209	1	70909	+		7850	19949	4386	4412	8009	8009					0.03773194517805223
DTLRVPPPL	9	Unmodified	_DTLRVPPPL_					0	0	0		EGR2|p.S277Vfs*4|1|0.09|ENSG00000122877|chr10:62813810-62813810|G/-|frameshift_variant;EGR2|p.G275Afs*6|2|0.44|ENSG00000122877|chr10:62813814-62813814|C/-|frameshift_variant;EGR2|p.S286Vfs*36|1|0.11|ENSG00000122877|chr10:62813783-62813783|G/-|frameshift_variant;nc|ENSG00000122877|P11161-2|EGR2;ENSG00000122877|ENST00000242480|EGR2	EGR2|p.S277Vfs*4|1|0.09|ENSG00000122877|chr10:62813810-62813810|G/-|frameshift_variant	EGR2|p.S277Vfs*4|1|0.09|ENSG00000122877|chr10:62813810-62813810|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.202	1	30.202	29.702	30.702	0								0	0	0	0.28164	1	11153	11153		30.318	1.1682	1				7851	891	4387	4413	8010	8010					0.0781033333993264
DTLSTMTQF	9	Unmodified	_DTLSTMTQF_					0	0	0		ENST00000521575.1_1_17:4802781-4802940:+|nuORF	ENST00000521575.1_1_17:4802781-4802940:+|nuORF	ENST00000521575.1_1_17:4802781-4802940:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2403564453125	2	522.239332	1042.46411	0.39616	0.00020689	0.46249	0.00024153	0.85865	0.00044842	522.2397300464161	34.991	0.13054	34.991	34.914	35.044	0					9	5	2	0	0	0	0.1115	1	11816	11816		76.774	7.9873	1	83105			7852	10313	4388	4414	8011	8011					-0.055421926619601436
DTMAVERVI	9	Unmodified	_DTMAVERVI_					0	0	0			REV__ENSG00000185504|ENST00000327787|FAAP100	REV__ENSG00000185504|ENST00000327787|FAAP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.267333984375	2	517.270967	1032.52738	-1.4626	-0.00075657	-4.3385	-0.0022442	-5.8011	-0.0030008	517.2687922028488	21.758	0.23134	21.758	21.623	21.854	0					10	5	3	0	0	0	0.098791	1	6392	6392		79.713	2.395	1	262130	+		7853	17030	4389	4415	8012	8012					0.012417928459399263
DTMHPNRK	8	Unmodified	_DTMHPNRK_					0	0	0			REV__ENSG00000149289|ENST00000278590|ZC3H12C	REV__ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.74578857421875	2	499.74545	997.476348	-0.18936	-9.4633E-05	0.46279	0.00023128	0.27343	0.00013664	499.7457654527315	12.568	0.075162	12.568	12.528	12.603	0					4	2	2	0	0	0	0.75323	1	2680	2680		31.955	5.2619	1	313700	+		7854	15411	4390	4416	8013	8013					-0.022491114082640706
DTMIVVDAAEI	11	Unmodified	_DTMIVVDAAEI_					0	0	0			REV__tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1	REV__tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.7960205078125	2	588.794472	1175.57439	0.16675	9.8179E-05	-0.044838	-2.64E-05	0.12191	7.1779E-05	588.7945725815084	41.535	0.52388	41.535	41.383	41.907	0					88	25	6	0	0	0	0.65907	1	15741	15741		31.53	31.53	1	6105700	+		7855	22174	4391	4417	8014	8014					-0.006373923935825587
DTMLHYLV	8	Unmodified	_DTMLHYLV_					0	0	0		SYNJ1|p.L80F|1|0.32|ENSG00000159082|chr21:32726775-32726775|G/A|missense_variant;nc|ENSG00000159082|O43426-5|SYNJ1;SYNJ1|p.P1149Rfs*44|1|0.38|ENSG00000159082|chr21:32645710-32645710|C/-|frameshift_variant;SYNJ1|p.Q1248Tfs*14|1|0.36|ENSG00000159082|chr21:32639744-32639745|-/G|frameshift_variant;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	SYNJ1|p.L80F|1|0.32|ENSG00000159082|chr21:32726775-32726775|G/A|missense_variant	SYNJ1|p.L80F|1|0.32|ENSG00000159082|chr21:32726775-32726775|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2510070800781	2	496.249503	990.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.328	1	18.328	17.828	18.828	0								0	0	0	1.7419	1	4768	4768		26.796	2.5934	1				7856	5296	4392	4418	8015	8015					-0.011169772115181331
DTMSRSTTL	9	Oxidation (M)	_DTM(Oxidation (M))SRSTTL_		DTM(1)SRSTTL		DTM(85)SRSTTL	0	0	1			REV__nc|ENSG00000196218|P21817-2|RYR1;REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant	REV__nc|ENSG00000196218|P21817-2|RYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2413940429688	2	514.239864	1026.46517	3.2042	0.0016477	0.28791	0.00014806	3.4921	0.0017958	514.240129749842	37.506	0.30767	37.506	37.383	37.691	0					17	6	4	0	0	0	0.0792	1	14673	14673		84.916	13.038	1	908840	+		7857	17234;21482	4393	4419	8016	8016		658			-0.04699978293069762
DTMTLVFVL	9	Oxidation (M)	_DTM(Oxidation (M))TLVFVL_		DTM(1)TLVFVL		DTM(79)TLVFVL	0	0	1		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|216|1|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|216|1|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|216|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.18829345703125	3	352.187821	1053.54163	0.49395	0.00017396	2.1937	0.00077261	2.6877	0.00094657	352.18857729590536	24.611	0.34407	24.611	24.519	24.864	0					18	8	4	0	0	0	0.099922	1	8293	8293		79.451	7.5735	1	1551200			7858	11185	4394	4420	8017	8017		437			0.017004452742185094
DTNKKQINV	9	Unmodified	_DTNKKQINV_					0	0	0		LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.293701171875	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.963	1	20.963	20.463	21.463	0								0	0	0	0.34907	1	5942	5942		25.45	0.93098	1				7859	3316	4395	4421	8018	8018					0.04507939983614051
DTNPNMPIV	9	Unmodified	_DTNPNMPIV_					0	0	0			REV__nc|ENSG00000102024|P13797-3|PLS3	REV__nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7422180175781	2	500.742042	999.469531	-0.99133	-0.0004964	-0.83209	-0.00041666	-1.8234	-0.00091306	500.7411625669375	32.683	0.37946	32.683	32.61	32.989	0					25	14	3	0	0	0	0.27249	1	10924	10924		52.937	3.7259	1	237440	+		7860	13622	4396	4422	8019	8019					-0.030224690795080278
DTNWKETF	8	Unmodified	_DTNWKETF_					0	0	0			REV__ENST00000430995.1_1_1:118183812-118184055:-|nuORF	REV__ENST00000430995.1_1_1:118183812-118184055:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7378540039062	2	520.737814	1039.46108	0.69188	0.00036029	-0.96087	-0.00050036	-0.26899	-0.00014008	520.7374649023595	32.386	0.10366	32.386	32.318	32.422	0					8	4	2	0	0	0	0.28427	1	10457	10457		87.754	8.3033	1	66549	+		7861	16056	4397	4423	8020	8020					-0.057076997244848826
DTPAQSGPL	9	Unmodified	_DTPAQSGPL_					0	0	0		RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant;ENSG00000183638|ENST00000382483|RP1L1;RP1L1|p.V381Cfs*109|1|0.28|ENSG00000183638|chr8:10612957-10612957|C/-|frameshift_variant	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2195129394531	2	443.219257	884.423961	-0.24947	-0.00011057	-0.34522	-0.00015301	-0.59469	-0.00026358	443.21918958943485	29.121	0.2041	29.121	29.022	29.226	0					7	4	2	0	0	0	0.25716	1	10741	10741		54.776	2.4771	1	98560			7862	6973	4398	4424	8021	8021					-0.022873712702221383
DTPLLPPAV	9	Unmodified	_DTPLLPPAV_					0	0	0		nc|ENSG00000163517|Q96DB2-2|HDAC11;ENSG00000163517|ENST00000295757|HDAC11	nc|ENSG00000163517|Q96DB2-2|HDAC11	nc|ENSG00000163517|Q96DB2-2|HDAC11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.7660217285156	2	461.765843	921.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.246	1	41.246	40.746	41.746	0								0	0	0	0.34907	1	15681	15681		25.45	0	1				7863	5569	4399	4425	8022	8022					0.05323553182995511
DTPLSPQATI	10	Unmodified	_DTPLSPQATI_					0	0	0			REV__ENST00000575894.1_1_16:697728-698187:+|nuORF	REV__ENST00000575894.1_1_16:697728-698187:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.272216796875	2	521.774396	1041.53424	0.40151	0.0002095	-0.066493	-3.4695E-05	0.33501	0.0001748	521.7741809184503	38.51	0.67499	38.51	38.088	38.763	0					14	9	2	0	0	0	0.46128	1	15051	15051		49.536	10.515	1	88920	+		7864	20413	4400	4426	8023	8023					0.015134289981460824
DTPRMPGAL	9	Unmodified	_DTPRMPGAL_					0	0	0		ENST00000560219.2_1_15:90321464-90321809:+|nuORF	ENST00000560219.2_1_15:90321464-90321809:+|nuORF	ENST00000560219.2_1_15:90321464-90321809:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2448425292969	2	479.244752	956.474951	0.46337	0.00022207	-1.1706	-0.00056102	-0.70726	-0.00033895	479.2442613511411	19.529	0.2276	19.529	19.356	19.584	0					11	5	3	0	0	0	0.2873	1	5901	5901		51.335	6.9583	1	490850			7865	10687	4401	4427	8024	8024					-0.005027454970218059
DTQKDISRV	9	Unmodified	_DTQKDISRV_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2839965820312	2	531.28292	1060.55129	-0.16553	-8.7941E-05	1.3091	0.00069548	1.1435	0.00060754	531.2833456406187	16.909	0.12156	16.909	16.851	16.972	0					10	5	3	0	0	0	0.1424	1	4139	4139		69.628	5.4204	1	126120			7866	7269	4402	4428	8025	8025					0.02343349603961542
DTRGLFSVF	9	Unmodified	_DTRGLFSVF_					0	0	0			REV__ENSG00000182481|ENST00000330459|KPNA2	REV__ENSG00000182481|ENST00000330459|KPNA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2734375	2	521.271824	1040.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.418	1	38.418	37.918	38.918	0								0	0	0	0.32356	1	13745	13745		30.504	0.6621	1		+		7867	16885	4403	4429	8026	8026					0.010451699261921021
DTRLGFNQ	8	Unmodified	_DTRLGFNQ_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.739013671875	2	475.738148	949.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.864	1	24.864	24.364	25.364	0								0	0	0	1.7419	1	7663	7663		37.159	1.5408	1		+		7868	15034	4404	4430	8027	8027					-0.015008602847615293
DTRLNTVWMWG	11	Unmodified	_DTRLNTVWMWG_					0	0	0			REV__nc|ENSG00000145715|P20936-3|RASA1	REV__nc|ENSG00000145715|P20936-3|RASA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	689.8303833007812	2	689.832254	1377.64996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.425	1	17.425	16.925	17.925	0								0	0	0	0.41424	1	4152	4152		33.922	2.2874	1		+		7869	15282	4405	4431	8028	8028					-0.02376370422666696
DTSAAYKSI	9	Unmodified	_DTSAAYKSI_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;DMXL1|p.N3021Mfs*3|1|0.28|ENSG00000172869|chr5:119247193-119247193|A/-|frameshift_variant;ENSG00000172869|ENST00000539542|DMXL1;DMXL1|p.S1844Vfs*9|1|0.1|ENSG00000172869|chr5:119170317-119170317|A/-|frameshift_variant	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.24078369140625	2	478.24019	954.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.467	1	36.467	35.967	36.967	0								0	0	0	0.040851	1	14176	14176		90.37	2.6155	1				7870	807	4406	4432	8029	8029					-0.013228155817046172
DTSDDDFME	9	Unmodified	_DTSDDDFME_					0	0	0		ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.6810302734375	2	537.682044	1073.34954	-1.4391	-0.00077379	-0.92155	-0.0004955	-2.3607	-0.0012693	537.6821975301405	25.682	1.1489	25.682	24.892	26.041	0					72	25	4	0	0	0	0.61124	1	8090	8090		18.324	3.4595	1	404430			7871	7163	4407	4433	8030	8030					-0.18420546934567028
DTTHEAATY	9	Unmodified	_DTTHEAATY_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7172546386719	2	504.717079	1007.4196	0.11533	5.821E-05	0.10187	5.1414E-05	0.2172	0.00010962	504.7173736843781	23.891	0.29905	23.891	23.794	24.093	0					18	7	3	0	0	0	0.25109	1	7362	7362		55.504	2.1528	1	368850			7872	4095	4408	4434	8031	8031					-0.0838088048380996
DTTKMHVIE	9	Unmodified	_DTTKMHVIE_					0	0	0			REV__ENST00000553731.1_1_14:51102099-51132046:-|nuORF	REV__ENST00000553731.1_1_14:51102099-51132046:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.269775390625	2	537.268424	1072.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.876	1	14.876	14.376	15.376	0								0	0	0	0.38404	1	3297	3297		15.642	1.8665	1		+		7873	20227	4409	4435	8032	8032					-0.011065110167010062
DTTRHKPAM	9	Oxidation (M)	_DTTRHKPAM(Oxidation (M))_		DTTRHKPAM(1)		DTTRHKPAM(41)	0	0	1			REV__ENST00000475962.5_1_22:39516350-39545814:-|nuORF	REV__ENST00000475962.5_1_22:39516350-39545814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.76123046875	2	536.76384	1071.51313	0.069973	3.7559E-05	-4.0235	-0.0021597	-3.9535	-0.0021221	536.761205411193	25.615	0.13558	25.615	25.52	25.655	0					5	4	2	0	0	0	0.41113	1	7995	7995		40.778	6.8565	1	65635	+		7874	19534	4410	4436	8033	8033		716			-0.01976859582373436
DTTVGTLAGE	10	Unmodified	_DTTVGTLAGE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2347106933594	2	482.235104	962.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.853	1	20.853	20.353	21.353	0								0	0	0	0.4201	1	6537	6537		20.947	0.95016	1		+		7875	15602;22247;21074	4411	4437	8034	8034					-0.02707423306947021
DTVAAFPSR	9	Unmodified	_DTVAAFPSR_					0	0	0			REV__CNKSR2|p.Y594Ifs*15|1|0.62|ENSG00000149970|chrX:21591137-21591138|-/A|frameshift_variant	REV__CNKSR2|p.Y594Ifs*15|1|0.62|ENSG00000149970|chrX:21591137-21591138|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.24969482421875	2	482.248349	962.482145	0.89678	0.00043247	1.6478	0.00079467	2.5446	0.0012271	482.24923592529046	30.901	0.46098	30.901	30.763	31.224	0					32	9	4	0	0	0	0.098791	1	11488	11488		79.713	5.7379	1	6681000	+		7876	12527	4412	4438	8035	8035					-0.0005968962494762309
DTVAGDTLLL	10	Unmodified	_DTVAGDTLLL_					0	0	0			REV__ENST00000473373.1_1_20:34214440-34214716:-|nuORF;REV__ENST00000401607.6_1_20:34214165-34218368:-|nuORF	REV__ENST00000473373.1_1_20:34214440-34214716:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2773132324219	2	509.276772	1016.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.409	1	38.409	37.909	38.909	0								0	0	0	0.30913	1	13741	13741		49.442	1.482	1		+		7877	19503;18951	4413	4439	8036	8036					0.03138313140925675
DTVEKLYK	8	Unmodified	_DTVEKLYK_					0	0	0		tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.27435302734375	2	498.274032	994.533512	0.22042	0.00010983	0.32819	0.00016353	0.54861	0.00027336	498.2741404301579	38.192	0.19782	38.192	38.114	38.312	0					19	11	2	0	0	0	0.60719	1	12457	12457		47.916	7.343	1	152640			7878	22611	4414	4440	8037	8037					0.036026343490902946
DTVIQHGY	8	Unmodified	_DTVIQHGY_					0	0	0			REV__nc|ENSG00000181885|O95471-2|CLDN7	REV__nc|ENSG00000181885|O95471-2|CLDN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.727294921875	2	466.727249	931.439946	-0.13387	-6.2482E-05	-0.70004	-0.00032673	-0.83391	-0.00038921	466.72684519165	27.722	0.16137	27.722	27.569	27.73	0					6	3	2	0	0	0	0.61938	1	10044	10044		45.952	7.1458	1	66412	+		7879	16860	4415	4441	8038	8038					-0.028516650333358484
DTVMPCGIL	9	Oxidation (M)	_DTVM(Oxidation (M))PCGIL_		DTVM(1)PCGIL		DTVM(66)PCGIL	0	0	1			REV__ENSG00000277791|ENST00000619426|PSMB3	REV__ENSG00000277791|ENST00000619426|PSMB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7295227050781	2	482.727546	963.440539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.293	1	33.293	32.793	33.793	0								0	0	0	0.12457	1	12299	12299		65.803	9.0821	1		+		7880	17836	4416	4442	8039	8039		666			-0.042643297001177416
DTVPTESLARA	11	Unmodified	_DTVPTESLARA_					0	0	0		nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	nc|ENSG00000182871|P39060-1|COL18A1	nc|ENSG00000182871|P39060-1|COL18A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.3031616210938	2	580.30131	1158.58807	0.69748	0.00040475	2.3405	0.0013582	3.038	0.001763	580.3025849275621	28.954	0.22305	28.954	28.874	29.097	0					9	8	2	0	0	0	0.68382	1	9077	9077		29.17	2.4771	1	108240			7881	11671	4417	4443	8040	8040					0.0151160142986555
DTVTGRLVQA	10	Unmodified	_DTVTGRLVQA_					0	0	0			REV__ENST00000513428.5_1_4:122602814-122617744:-|nuORF	REV__ENST00000513428.5_1_4:122602814-122617744:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.8645324707031	3	353.864617	1058.57202	1.4433	0.00051074	-1.0072	-0.00035642	0.43611	0.00015432	353.86408095803506	16.524	0.36551	16.524	16.363	16.729	0					14	7	3	0	0	0	0.44469	1	4750	4750		46.457	0.50483	1	1258900	+		7882	15964	4418	4444	8041	8041					0.04507939983614051
DTWDRYDT	8	Unmodified	_DTWDRYDT_					0	0	0			REV__ENSG00000000003|ENST00000373020|TSPAN6	REV__ENSG00000000003|ENST00000373020|TSPAN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.2213134765625	2	536.222528	1070.4305	-1.3864	-0.00074342	-0.24805	-0.00013301	-1.6344	-0.00087643	536.2221873579799	38.128	0.118	38.128	38.078	38.196	0					9	6	2	0	0	0	0.68432	1	13641	13641		35.618	35.618	1	44750	+		7883	12806	4419	4445	8042	8042					-0.10189478109532502
DTYKMKIK	8	Unmodified	_DTYKMKIK_					0	0	0		tr|U7SWT0|U7SWT0_FUSNUDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrKPE=3SV=1	tr|U7SWT0|U7SWT0_FUSNUDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrKPE=3SV=1	tr|U7SWT0|U7SWT0_FUSNUDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrKPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7881469726562	2	513.786253	1025.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.427	1	17.427	16.927	17.927	0								0	0	0	1.7419	1	4153	4153		35.618	24.753	1				7884	22861	4420	4446	8043	8043					0.04619571230955444
DTYYYRRRHRH	11	Unmodified	_DTYYYRRRHRH_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18;ENST00000507405.5_1_5:138755893-138773164:-|nuORF	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	811.9088745117188	2	811.905996	1621.79744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.592	1	54.592	54.092	55.092	0								0	0	0	0.45674	1	16538	16538		9.7057	6.7762	1				7885	6238	4421	4447	8044	8044					0.011412822263309863
DVAGSPKQTK	10	Unmodified	_DVAGSPKQTK_					0	0	0			REV__ENST00000485949.5_1_3:123652514-123665686:-|nuORF	REV__ENST00000485949.5_1_3:123652514-123665686:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2818603515625	2	515.780013	1029.54547	0.032926	1.6983E-05	-1.8827	-0.00097106	-1.8498	-0.00095408	515.7790860126946	38.871	0.33879	38.871	38.751	39.09	0					26	12	3	0	0	0	0.65051	1	14840	14840		28.081	0.19925	1	267340	+		7886	12355	4422	4448	8045	8045					0.03188251092274186
DVAKLLLQ	8	Unmodified	_DVAKLLLQ_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.N1476Mfs*12|1|0.21|ENSG00000145362|chr4:113350244-113350244|A/-|frameshift_variant;ANK2|p.E1746*|1|0.07|ENSG00000145362|chr4:113353848-113353849|-/C|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.R2581Efs*5|1|0.41|ENSG00000145362|chr4:113356352-113356353|-/A|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2822570800781	2	450.28166	898.548768	0.50175	0.00022593	-0.89831	-0.00040449	-0.39657	-0.00017857	450.2812329583612	28.727	0.25403	28.727	28.613	28.867	0					13	6	3	0	0	0	0.67394	1	9550	9550		37.159	5.2042	1	358220			7887	4668	4423	4449	8046	8046					0.09543545936958253
DVARLIFSK	9	Unmodified	_DVARLIFSK_					0	0	0		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8113403320312	2	524.811116	1047.60768	0.58689	0.00030801	0.18705	9.8163E-05	0.77393	0.00040617	524.8110332097154	30.04	0.29971	30.04	29.898	30.198	0					18	11	2	0	0	0	0.38666	1	9868	9868		42.864	2.8061	1	133910			7888	7199	4424	4450	8047	8047					0.08578022231290561
DVATSPISPTE	11	Unmodified	_DVATSPISPTE_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENST00000526103.1_1_11:77064519-77066893:-|nuORF	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2757568359375	2	558.774593	1115.53463	0.52607	0.00029395	0.35582	0.00019883	0.88189	0.00049278	558.775060102474	37.78	0.4316	37.78	37.451	37.882	0					18	13	2	0	0	0	0.72154	1	14343	14343		25.574	0	1	78461			7889	4872	4425	4451	8048	8048					-0.018511960726755206
DVDAAVEKL	9	Unmodified	_DVDAAVEKL_					0	0	0		ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2557678222656	2	480.25584	958.497126	0.055564	2.6685E-05	-0.073204	-3.5156E-05	-0.017639	-8.4714E-06	480.25570371275995	31.322	0.40675	31.322	31.175	31.582	0					19	10	3	0	0	0	0.19605	1	10758	10758		62.107	3.3255	1	180530			7890	6561	4426	4452	8049	8049					0.01621757452392103
DVDASDDY	8	Unmodified	_DVDASDDY_					0	0	0		FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1;FREM1|p.S1085Afs*5|1|0.39|ENSG00000164946|chr9:14806682-14806682|T/-|frameshift_variant;FREM1|p.S839Lfs*8|1|0.23|ENSG00000164946|chr9:14819265-14819265|A/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.1662902832031	2	450.166887	898.319221	-0.47917	-0.00021571	-0.13112	-5.9025E-05	-0.61029	-0.00027473	450.1667884066088	46.12	0.28047	46.12	46.018	46.299	0					31	17	2	0	0	0	0.79882	1	17069	17069		19.36	5.5846	1	236890			7891	5747	4427	4453	8050	8050					-0.13400537537461332
DVDGAYIQK	9	Unmodified	_DVDGAYIQK_					0	0	0			REV__nc|ENSG00000102543|Q9BWV3-4|CDADC1	REV__nc|ENSG00000102543|Q9BWV3-4|CDADC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7537536621094	2	504.753464	1007.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.849	1	26.849	26.349	27.349	0								0	0	0	0.15451	1	8705	8705		58.782	2.0609	1		+		7892	13639	4428	4454	8051	8051					-0.011071266903854848
DVDLVQKY	8	Unmodified	_DVDLVQKY_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.25799560546875	2	490.258382	978.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.149	1	35.149	34.649	35.649	0								0	0	0	1.7419	1	13157	13157		25.45	0.94616	1				7893	7384	4429	4455	8052	8052					0.012100613149982564
DVEQIVGEM	9	Unmodified	_DVEQIVGEM_					0	0	0			REV__ENSG00000130396|ENST00000683244|AFDN	REV__ENSG00000130396|ENST00000683244|AFDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.23968505859375	2	510.239332	1018.46411	-0.014753	-7.5274E-06	0.49068	0.00025036	0.47593	0.00024284	510.2395036658011	37.997	0.23904	37.997	37.904	38.143	0					7	5	2	0	0	0	0.24095	1	14913	14913		56.721	14.325	1	87963	+		7894	14578	4430	4456	8053	8053					-0.04438192661973517
DVEYKLKT	8	Unmodified	_DVEYKLKT_					0	0	0			REV__ENST00000589088.1_1_18:44266135-44268875:-|nuORF	REV__ENST00000589088.1_1_18:44266135-44268875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.27410888671875	2	498.274032	994.533512	0.17562	8.7508E-05	-0.73933	-0.00036839	-0.56371	-0.00028088	498.27382903489206	33.184	0.13857	33.184	33.09	33.229	0					7	4	2	0	0	0	0.5676	1	11614	11614		53.351	0	1	77941	+		7895	13610	4431	4457	8054	8054					0.036026343490902946
DVFKILAAIL	10	Unmodified	_DVFKILAAIL_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;ENST00000560809.5_1_15:52548900-52557395:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.900390625	3	368.23387	1101.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.911	1	20.911	20.411	21.411	0								0	0	0	0.3805	1	5674	5674		36.447	4.9169	1				7896	3564	4432	4458	8055	8055					0.1330093658500573
DVGDAGHN	8	Unmodified	_DVGDAGHN_					0	0	0		DSPP|p.N1002Kfs*4|1|0.09|ENSG00000152591|chr4:87615665-87615666|-/A|frameshift_variant;ENSG00000152591|ENST00000651931|DSPP	DSPP|p.N1002Kfs*4|1|0.09|ENSG00000152591|chr4:87615665-87615666|-/A|frameshift_variant	DSPP|p.N1002Kfs*4|1|0.09|ENSG00000152591|chr4:87615665-87615666|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.6650390625	2	392.664649	783.314745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.151	1	33.151	32.651	33.651	0								0	0	0	1.7419	1	12667	12667		26.796	1.3459	1				7897	853	4433	4459	8056	8056					-0.08557957169705332
DVGDLEKAAL	10	Unmodified	_DVGDLEKAAL_					0	0	0			REV__MYO19|p.E836D|1|0.33|ENSG00000278259|chr17:36498515-36498515|T/A|missense_variant	REV__MYO19|p.E836D|1|0.33|ENSG00000278259|chr17:36498515-36498515|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7742309570312	2	515.774396	1029.53424	0.22818	0.00011769	-0.1931	-9.9594E-05	0.03508	1.8093E-05	515.7743722137301	32.373	0.30968	32.373	32.271	32.581	0					31	13	3	0	0	0	0.4758	1	10445	10445		47.96	1.5027	1	679550	+		7898	20911	4434	4460	8057	8057					0.02065428998139396
DVGDLQHL	8	Unmodified	_DVGDLQHL_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.7270812988281	2	448.727249	895.439946	-2.5965	-0.0011651	2.4231	0.0010873	-0.17338	-7.7802E-05	448.72837455861185	27.686	0.17837	27.686	27.565	27.743	0					7	4	2	0	0	0	0.41952	1	9085	9085		68.485	2.6815	1	75681	+		7899	15955	4435	4461	8058	8058					-0.011956650333331709
DVGGRSGAEP	10	Unmodified	_DVGGRSGAEP_					0	0	0			REV__TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant	REV__TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.72772216796875	2	472.725238	943.435923	-0.12264	-5.7977E-05	3.5556	0.0016808	3.433	0.0016228	472.7268515747084	31.781	0.44303	31.781	31.485	31.928	0					13	9	2	0	0	0	0.61187	1	12049	12049		32.812	3.6629	1	36149	+		7900	17758	4436	4462	8059	8059					-0.03805754527047611
DVGNGTVQAI	10	Unmodified	_DVGNGTVQAI_					0	0	0			REV__DCHS1|p.D2302G|1|0.05|ENSG00000166341|chr11:6625439-6625439|T/C|missense_variant	REV__DCHS1|p.D2302G|1|0.05|ENSG00000166341|chr11:6625439-6625439|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.25103759765625	2	487.251089	972.487624	-1.2448	-0.00060653	0.53204	0.00025924	-0.71275	-0.00034729	487.25134419867135	22.313	0.67531	22.313	22.101	22.776	0					45	21	4	0	0	0	0.52275	1	6501	6501		42.864	2.0861	1	817530	+		7901	12675	4437	4463	8060	8060					0.0002798916684696451
DVIKAAHRCAE	11	Unmodified	_DVIKAAHRCAE_					0	0	0		ENST00000438325.2_1_9:92064608-92065217:+|nuORF	ENST00000438325.2_1_9:92064608-92065217:+|nuORF	ENST00000438325.2_1_9:92064608-92065217:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.8764953613281	3	404.87664	1211.60809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.224	1	45.224	44.724	45.724	0								0	0	0	0.45674	1	18113	18113		22.562	12.458	1				7902	9546	4438	4464	8061	8061					0.010750738888191336
DVKAVLAVL	9	Unmodified	_DVKAVLAVL_					0	0	0		DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.F4486Lfs*7|2|0.23|ENSG00000039139|chr5:13701317-13701317|A/-|frameshift_variant;ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.L1467Wfs*3|1|0.23|ENSG00000039139|chr5:13864593-13864593|A/-|frameshift_variant;DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant;DNAH5|p.G1976Efs*78|3|0.44|ENSG00000039139|chr5:13830731-13830731|C/-|frameshift_variant;DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant;DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.29718017578125	2	464.29731	926.580068	-0.48368	-0.00022457	0.49966	0.00023199	0.015985	7.4218E-06	464.29762576550104	39.396	0.19946	39.396	39.301	39.5	0					6	4	2	0	0	0	0.23186	1	15577	15577		57.811	1.0902	1	132140			7903	817;818	4439	4465	8062	8062					0.1138411897103424
DVKEAASVY	9	Unmodified	_DVKEAASVY_					0	0	0		ENST00000490962.1_1_3:72926686-72926866:-|nuORF	ENST00000490962.1_1_3:72926686-72926866:-|nuORF	ENST00000490962.1_1_3:72926686-72926866:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.24755859375	2	491.248015	980.481476	-0.0734	-3.6058E-05	-0.16671	-8.1897E-05	-0.24011	-0.00011795	491.2479945890582	35.17	0.3693	35.17	35.055	35.425	0					28	12	3	0	0	0	0.2873	1	12497	12497		51.335	0	1	543490			7904	10066	4440	4466	8063	8063					-0.009545290646656213
DVKGKVLII	9	Unmodified	_DVKGKVLII_					0	0	0		tr|U7SNC7|U7SNC7_FUSNUD-aminoacyl-tRNAdeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dtdPE=3SV=1	tr|U7SNC7|U7SNC7_FUSNUD-aminoacyl-tRNAdeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dtdPE=3SV=1	tr|U7SNC7|U7SNC7_FUSNUD-aminoacyl-tRNAdeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dtdPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.82647705078125	2	492.826235	983.637917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.158	1	46.158	45.658	46.658	0								0	0	0	0.3119	1	18476	18476		32.812	1.2826	1				7905	22678	4441	4467	8064	8064					0.14544380896461462
DVKKFDKNL	9	Unmodified	_DVKKFDKNL_					0	0	0			REV__ENST00000325117.8_1_X:101802327-101802774:-|nuORF	REV__ENST00000325117.8_1_X:101802327-101802774:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.54498291015625	3	369.544996	1105.61316	1.0268	0.00037947	-0.23492	-8.6813E-05	0.79193	0.00029265	369.5446904048059	30.433	0.29532	30.433	30.306	30.601	0					11	6	3	0	0	0	0.56424	1	11401	11401		26.063	0	1	504970	+		7906	18352	4442	4468	8065	8065					0.06457701023077789
DVKKNHDRDL	10	Unmodified	_DVKKNHDRDL_					0	0	0			REV__HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant	REV__HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	620.3283081054688	2	620.32565	1238.63675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.091	1	49.091	48.591	49.591	0								0	0	0	0.3963	1	19456	19456		31.634	1.3165	1		+	+	7907	12616	4443	4469	8066	8066					0.026975147896109775
DVKLIQTM	8	Unmodified	_DVKLIQTM_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.26495361328125	2	474.265153	946.515753	-0.57348	-0.00027198	0.77361	0.0003669	0.20013	9.4916E-05	474.26526251747595	39.788	0.22171	39.788	39.664	39.886	0					10	7	2	0	0	0	0.53424	1	15666	15666		56.721	1.9447	1	138680			7908	4287	4444	4470	8067	8067					0.04035595822585947
DVLKTNRQK	9	Unmodified	_DVLKTNRQK_					0	0	0		ENST00000606851.5_1_6:22020665-22056887:+|nuORF	ENST00000606851.5_1_6:22020665-22056887:+|nuORF	ENST00000606851.5_1_6:22020665-22056887:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.3228149414062	2	551.32238	1100.63021	1.8284	0.001008	-1.3287	-0.00073254	0.49969	0.00027549	551.3218163141873	22.39	0.32178	22.39	22.295	22.616	0					14	7	3	0	0	0	0.37197	1	7279	7279		44.117	5.3107	1	468940			7909	11085	4445	4471	8068	8068					0.08391621628902612
DVLRGIRE	8	Unmodified	_DVLRGIRE_					0	0	0			REV__ENSG00000089169|ENST00000389385|RPH3A	REV__ENSG00000089169|ENST00000389385|RPH3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2777099609375	2	479.277441	956.540328	0.66221	0.00031738	-0.32892	-0.00015764	0.33329	0.00015974	479.27719127091274	48.484	1.2038	48.484	48.162	49.366	0					103	72	2	0	0	0	0.65276	1	18293	18293		40.573	3.4135	1	170910	+		7910	13406	4446	4472	8069	8069					0.06031992020336929
DVNIRNTY	8	Unmodified	_DVNIRNTY_					0	0	0		CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.75115966796875	2	497.751256	993.487959	0.80053	0.00039846	-0.9848	-0.00049019	-0.18428	-9.1723E-05	497.75071052297943	22.358	0.21523	22.358	22.253	22.468	0					10	4	3	0	0	0	0.37378	1	7569	7569		73.975	10.668	1	1092100			7911	377	4447	4473	8070	8070					-0.009045911132830042
DVNLNTLK	8	Unmodified	_DVNLNTLK_					0	0	0			REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.758056640625	2	458.758549	915.502546	-0.41524	-0.00019049	-0.387	-0.00017754	-0.80224	-0.00036803	458.75845692617463	27.844	0.29939	27.844	27.635	27.934	0					15	9	2	0	0	0	0.61938	1	8625	8625		45.952	1.8352	1	100210	+		7912	16825	4448	4474	8071	8071					0.041414810348555875
DVNLNTLK	8	Unmodified	_DVNLNTLK_					0	0	0			REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7583312988281	2	458.758549	915.502546	-0.65386	-0.00029996	-0.0098683	-4.5272E-06	-0.66373	-0.00030449	458.75860204988885	28.157	0.46797	28.157	27.862	28.33	0					25	11	3	0	0	0	0.32597	1	9889	9889		79.713	2.9384	1	491420	+		7913	16825	4448	4474	8072	8072					0.041414810348555875
DVNMRLRF	8	Unmodified	_DVNMRLRF_					0	0	0		ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7794189453125	2	525.779293	1049.54403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.098	1	38.098	37.598	38.598	0								0	0	0	1.7419	1	14933	14933		38.806	1.647	1				7914	8201	4449	4475	8073	8073					0.02124338522526159
DVPPAKPQ	8	Unmodified	_DVPPAKPQ_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.2343444824219	2	426.23471	850.454868	0.28578	0.00012181	-1.0478	-0.00044662	-0.76204	-0.00032481	426.2342104585276	20.733	0.10651	20.733	20.669	20.776	0					5	3	2	0	0	0	0.66372	1	5613	5613		38.806	0	1	86297	+		7915	12887	4450	4476	8074	8074					0.023658268346594014
DVPQSRQY	8	Unmodified	_DVPQSRQY_					0	0	0			REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF	REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7431335449219	2	496.743431	991.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.728	1	17.728	17.228	18.228	0								0	0	0	1.7419	1	4500	4500		18.324	1.8513	1		+		7916	12222	4451	4477	8075	8075					-0.023768776303313643
DVQTESTGIF	10	Unmodified	_DVQTESTGIF_					0	0	0			REV__PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant	REV__PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2611083984375	2	548.761486	1095.50842	1.16	0.00063658	-2.9754	-0.0016328	-1.8154	-0.0009962	549.261209167361	35.682	0.27219	35.682	35.544	35.816	0					14	10	2	0	0	0	0.59277	1	12709	12709		35.152	10.949	1	58023	+		7917	15022	4452	4478	8076	8076					-0.035514652441406724
DVREEGKENAF	11	Unmodified	_DVREEGKENAF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.87353515625	3	431.873841	1292.59969	0.17546	7.5777E-05	-0.080138	-3.4609E-05	0.095324	4.1168E-05	431.8738509087767	24.511	0.1812	24.511	24.421	24.602	0					10	4	3	0	0	0	0.30412	1	8253	8253		62.166	16.258	1	360880			7918	2567	4453	4479	8077	8077					-0.0349020154678783
DVREEGKENAF	11	Unmodified	_DVREEGKENAF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.8736877441406	3	431.873841	1292.59969	-0.48152	-0.00020796	0.14401	6.2196E-05	-0.33751	-0.00014576	431.8738463735181	24.5	0.16648	24.5	24.41	24.577	0					10	3	4	0	0	0	0.37395	1	8577	8577		54.343	26.699	1	648620			7919	2567	4453	4479	8078	8078					-0.0349020154678783
DVREEGKENAF	11	Unmodified	_DVREEGKENAF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	647.3072509765625	2	647.307123	1292.59969	0.27382	0.00017724	-0.24931	-0.00016138	0.024512	1.5867E-05	647.3070502821604	24.304	0.092613	24.304	24.263	24.355	0					6	2	3	0	0	0	0.24228	1	7569	7569		44.639	10.718	1	160690			7920	2567	4453	4479	8079	8079					-0.0349020154678783
DVRMTLGYVGK	11	Unmodified	_DVRMTLGYVGK_					0	0	0		nc|ENSG00000118197|Q5T1V6-2|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.8336791992188	2	619.831723	1237.64889	3.0882	0.0019142	-0.0059567	-3.6921E-06	3.0822	0.0019105	619.8317928889269	15.186	0.11617	15.186	15.13	15.246	0					6	2	3	0	0	0	0.35529	1	3963	3963		56.434	1.6575	1	1181900			7921	11497	4454	4480	8080	8080					0.03957415208424209
DVRNPVIYAV	10	Unmodified	_DVRNPVIYAV_					0	0	0		nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.3192749023438	2	573.319306	1144.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.686	1	29.686	29.186	30.186	0								0	0	0	0.24422	1	10905	10905		58.782	9.2459	1				7922	924	4455	4481	8081	8081					0.057531033973418744
DVSIEDKRRK	10	Unmodified	_DVSIEDKRRK_					0	0	0			REV__nc|ENSG00000156475|Q00005-3|PPP2R2B;REV__ENSG00000175470|ENST00000455566|PPP2R2D	REV__nc|ENSG00000156475|Q00005-3|PPP2R2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.9015197753906	3	415.901843	1244.6837	-0.34824	-0.00014483	-0.20579	-8.5587E-05	-0.55402	-0.00023042	415.901693714046	24.829	0.16101	24.829	24.723	24.884	0					5	3	2	0	0	0	0.48965	1	8629	8629		46.457	0.69241	1	364750	+		7923	21075;16614	4456	4482	8082	8082					0.07114374340721952
DVSRMRRQ	8	Unmodified	_DVSRMRRQ_					0	0	0		ENSG00000135951|ENST00000393483|TSGA10	ENSG00000135951|ENST00000393483|TSGA10	ENSG00000135951|ENST00000393483|TSGA10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.85382080078125	3	349.854058	1046.54035	-0.70282	-0.00024589	0.037077	1.2971E-05	-0.66575	-0.00023291	349.8540238003245	18.894	0.3898	18.894	18.697	19.086	0					34	12	5	0	0	0	0.8006	1	4977	4977		16.473	16.473	1	2072400			7924	4040	4457	4483	8083	8083					0.018936687486757364
DVTPHKSEL	9	Unmodified	_DVTPHKSEL_					0	0	0		ENST00000303575.8_1_14:75601016-75601088:-|nuORF	ENST00000303575.8_1_14:75601016-75601088:-|nuORF	ENST00000303575.8_1_14:75601016-75601088:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2659301757812	2	513.266739	1024.51892	1.2984	0.00066642	-0.55036	-0.00028248	0.74804	0.00038394	513.2666044524108	35.821	0.29171	35.821	35.605	35.896	0					14	8	3	0	0	0	0.33044	1	13933	13933		47.657	5.2612	1	236240			7925	8505	4458	4484	8084	8084					0.007645622009476938
DVTQENILL	9	Unmodified	_DVTQENILL_					0	0	0		nc|ENSG00000109738|P48167-2|GLRB;ENSG00000109738|ENST00000264428|GLRB	nc|ENSG00000109738|P48167-2|GLRB	nc|ENSG00000109738|P48167-2|GLRB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7817993164062	2	522.782222	1043.54989	0.34471	0.00018021	-0.3719	-0.00019442	-0.02719	-1.4214E-05	522.781866341614	31.964	0.56589	31.964	31.751	32.317	0					41	23	2	0	0	0	0.42902	1	10614	10614		39.253	1.4413	1	104790			7926	2588	4459	4485	8085	8085					0.029857155152058112
DVVNKLPEH	9	Unmodified	_DVVNKLPEH_					0	0	0			REV__EDEM3|p.R546H|1|0.45|ENSG00000116406|chr1:184711777-184711777|C/T|missense_variant	REV__EDEM3|p.R546H|1|0.45|ENSG00000116406|chr1:184711777-184711777|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.78369140625	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.432	1	46.432	45.932	46.932	0								0	0	0	0.27939	1	17847	17847		39.253	7.298	1		+		7927	12766	4460	4486	8086	8086					0.027765549548803392
DVVVVLRTSEN	11	Unmodified	_DVVVVLRTSEN_					0	0	0		nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;MYO3B|p.K1243Sfs*25|1|0.21|ENSG00000071909|chr2:170543980-170543980|A/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B;MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant;MYO3B|p.G1143Efs*93|1|0.19|ENSG00000071909|chr2:170514975-170514975|G/-|frameshift_variant;ENST00000602629.1_1_2:171225816-171400468:+|nuORF	nc|ENSG00000071909|Q8WXR4-6|MYO3B	nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.8944091796875	3	410.894465	1229.66157	-0.47225	-0.00019405	0.32157	0.00013213	-0.15068	-6.1915E-05	410.894593239854	22.547	0.21527	22.547	22.489	22.705	0					9	4	3	0	0	0	0.74306	1	7527	7527		15.921	0	1	1378400			7928	1479	4461	4487	8087	8087					0.05592149872336449
DVWEHLSL	8	Unmodified	_DVWEHLSL_					0	0	0		ENST00000379687.7_1_X:19935350-19935407:-|nuORF	ENST00000379687.7_1_X:19935350-19935407:-|nuORF	ENST00000379687.7_1_X:19935350-19935407:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7560119628906	2	499.750724	997.486896	0.66678	0.00033322	4.4155	0.0022066	5.0823	0.0025399	499.7531254756121	30.616	0.816	30.616	30.324	31.14	0					42	19	4	0	0	0	0.36926	1	10973	10973		74.517	3.1387	1	3213100			7929	9088	4462	4488	8088	8088					-0.011948054821914411
DWAFVPAPC	9	Unmodified	_DWAFVPAPC_					0	0	0		ENSG00000162849|ENST00000407071|KIF26B;KIF26B|p.T254I|1|0.25|ENSG00000162849|chr1:245367129-245367129|C/T|missense_variant;ENST00000479506.1_1_1:245517197-245533964:+|nuORF;KIF26B|p.G746Efs*98|1|0.05|ENSG00000162849|chr1:245646258-245646259|-/AGAT|frameshift_variant;KIF26B|p.R1067Gfs*65|1|0.27|ENSG00000162849|chr1:245686177-245686177|C/-|frameshift_variant;KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2295227050781	2	503.228571	1004.44259	1.0018	0.00050412	0.60216	0.00030302	1.6039	0.00080715	503.22884191666606	19.812	0.96998	19.812	19.559	20.529	0					41	19	4	0	0	0	0.36711	1	6289	6289		44.531	44.531	1	12651000			7930	5504	4463	4489	8089	8089					-0.05945532900034323
DWDAEDLQ	8	Unmodified	_DWDAEDLQ_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;MAN2A2|p.V832Rfs*6|1|0.43|ENSG00000196547|chr15:90912894-90912895|-/C|frameshift_variant;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2030334472656	2	496.203804	990.393055	-0.76641	-0.0003803	-0.94741	-0.00047011	-1.7138	-0.00085041	496.20322219662506	14.446	0.14538	14.446	14.348	14.494	0					5	3	2	0	0	0	0.8006	1	3757	3757		20.482	1.1219	1	105340			7931	7378	4464	4490	8090	8090					-0.1025256937513177
DWISYTLEQ	9	Unmodified	_DWISYTLEQ_					0	0	0			REV__ENSG00000174358|ENST00000304460|SLC6A19	REV__ENSG00000174358|ENST00000304460|SLC6A19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.770751953125	2	577.771854	1153.52915	-0.41629	-0.00024052	-2.4451	-0.0014127	-2.8614	-0.0016532	577.7708307307837	27.144	0.41614	27.144	27.039	27.455	0					25	8	5	0	0	0	0.12834	1	9786	9786		56.721	7.2795	1	3262400	+		7932	16564	4465	4491	8091	8091					-0.04146874864477468
DWQFYLTY	8	Unmodified	_DWQFYLTY_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;NAA25|p.D271N|1|0.36|ENSG00000111300|chr12:112074730-112074730|C/T|missense_variant	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.2606201171875	2	568.258382	1134.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.507	1	15.507	15.007	16.007	0								0	0	0	1.7419	1	3550	3550		29.15	1.2673	1				7933	2660	4466	4492	8092	8092					-0.05965938685017136
DWRLGVIK	8	Unmodified	_DWRLGVIK_					0	0	0		nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7972106933594	2	493.792727	985.5709	2.788	0.0013767	4.1068	0.0020279	6.8948	0.0034046	493.7955977231161	35.587	0.27109	35.587	35.449	35.721	0					17	5	4	0	0	0	0.46013	1	13750	13750		64.207	5.4253	1	1593200			7934	4744	4467	4493	8093	8093					0.07753770405383875
DWSLRQHW	8	Unmodified	_DWSLRQHW_					0	0	0			REV__ENST00000603864.5_1_12:51663146-51663326:-|nuORF	REV__ENST00000603864.5_1_12:51663146-51663326:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2723388671875	2	564.27269	1126.53083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.843	1	13.843	13.343	14.343	0								0	0	0	1.7419	1	3462	3462		26.693	2.1737	1		+		7935	20610	4468	4494	8094	8094					-0.027377762651894955
DWVSEGPQ	8	Unmodified	_DWVSEGPQ_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2049255371094	2	459.203607	916.392661	2.5193	0.0011569	-0.52367	-0.00024047	1.9956	0.0009164	459.203418832437	51.714	0.071526	51.714	51.662	51.733	0					5	4	2	0	0	0	0.78142	1	20193	20193		23.042	6.3375	1	67388			7936	1941	4469	4495	8095	8095					-0.06887944304321536
DYAVGLSRM	9	Oxidation (M)	_DYAVGLSRM(Oxidation (M))_		DYAVGLSRM(1)		DYAVGLSRM(61)	0	0	1		nc|ENSG00000164904|P49419-4|ALDH7A1;ALDH7A1|p.E507Gfs*5|1|0.1|ENSG00000164904|chr5:126546371-126546372|-/T|frameshift_variant;nc|ENSG00000164904|P49419-2|ALDH7A1;ENSG00000164904|ENST00000409134|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.248291015625	2	514.247492	1026.48043	0.60962	0.00031349	0.82238	0.00042291	1.432	0.0007364	514.2477976143078	19.226	0.26903	19.226	19.151	19.42	0					9	6	2	0	0	0	0.20551	1	5196	5196		60.972	9.6365	1	76652			7937	114	4470	4496	8096	8096		8			-0.03175066705193785
DYDIAARK	8	Unmodified	_DYDIAARK_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2476806640625	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.181	1	30.181	29.681	30.681	0								0	0	0	1.7419	1	10247	10247		44.117	1.6423	1				7938	984	4471	4497	8097	8097					0.004923103750343216
DYDQYKEK	8	Unmodified	_DYDQYKEK_					0	0	0			REV__tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	REV__tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7503662109375	2	544.748379	1087.4822	3.6967	0.0020138	-0.59735	-0.00032541	3.0994	0.0016884	544.7477733074203	12.387	0.36126	12.387	12.165	12.526	0					17	11	2	0	0	0	0.79709	1	2612	2612		18.262	0	1	158950	+		7939	22192	4472	4498	8098	8098					-0.05803734415621875
DYDSVFHHL	9	Unmodified	_DYDSVFHHL_					0	0	0		ENST00000495790.1_1_10:32573515-32573971:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1;EPC1|p.V808Rfs*9|1|0.18|ENSG00000120616|chr10:32271569-32271570|AC/-|frameshift_variant;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1	ENST00000495790.1_1_10:32573515-32573971:-|nuORF	ENST00000495790.1_1_10:32573515-32573971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.1733093261719	3	378.173451	1131.49852	0.68277	0.00025821	-0.73242	-0.00027698	-0.049653	-1.8778E-05	378.173217252157	40.18	0.21578	40.18	40.092	40.308	0					12	5	3	0	0	0	0.30951	1	15925	15925		49.442	21.559	1	363530			7940	3178	4473	4499	8099	8099					-0.06196608458844821
DYEIKGYEI	9	Unmodified	_DYEIKGYEI_					0	0	0		tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.27392578125	2	565.274229	1128.53391	0.13649	7.7155E-05	-0.3328	-0.00018812	-0.19631	-0.00011097	565.2740052135222	23.485	0.30796	23.485	23.368	23.676	0					23	11	3	0	0	0	0.41113	1	7042	7042		40.778	1.5253	1	259410			7941	22942	4474	4500	8100	8100					-0.025219907216978754
DYENVAKKI	9	Unmodified	_DYENVAKKI_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2901000976562	2	540.290214	1078.56587	1.9743	0.0010667	-2.3003	-0.0012428	-0.32596	-0.00017611	540.288935824321	43.658	0.15437	43.658	43.593	43.747	0					14	8	2	0	0	0	0.1424	1	17047	17047		69.628	6.0938	1	117480	+		7942	17279	4475	4501	8101	8101					0.029734217520854145
DYGDKHSRY	9	Unmodified	_DYGDKHSRY_					0	0	0			REV__KDM1B|p.I116Yfs*48|1|0.14|ENSG00000165097|chr6:18166301-18166301|A/-|frameshift_variant	REV__KDM1B|p.I116Yfs*48|1|0.14|ENSG00000165097|chr6:18166301-18166301|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7572631835938	2	570.757069	1139.49959	0.20627	0.00011773	0.28695	0.00016378	0.49321	0.00028151	570.757469702912	38.914	0.25686	38.914	38.792	39.049	0					9	5	2	0	0	0	0.54267	1	15341	15341		27.882	3.6795	1	81209	+		7943	16019	4476	4502	8102	8102					-0.06458394089941066
DYGLVSQAL	9	Unmodified	_DYGLVSQAL_					0	0	0		ENSG00000120341|ENST00000308284|SEC16B;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF;SEC16B|p.Y799Tfs*17|1|0.42|ENSG00000120341|chr1:177937322-177937322|A/-|frameshift_variant;nc|ENSG00000120341|Q96JE7-3|SEC16B;ENST00000327037.8_1_1:177899723-177917737:-|nuORF	ENSG00000120341|ENST00000308284|SEC16B	ENSG00000120341|ENST00000308284|SEC16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2520751953125	2	483.250557	964.486562	0.055467	2.6804E-05	4.3174	0.0020864	4.3728	0.0021132	483.25217360374506	29.637	0.11762	29.637	29.577	29.694	0					9	4	3	0	0	0	0.44593	1	9381	9381		37.812	0.65241	1	57315			7944	3169	4477	4503	8103	8103					0.002897747979545784
DYIKSGILL	9	Unmodified	_DYIKSGILL_					0	0	0		ENST00000451892.1_1_1:240307039-240307453:-|nuORF	ENST00000451892.1_1_1:240307039-240307453:-|nuORF	ENST00000451892.1_1_1:240307039-240307453:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.3005065917969	2	511.30005	1020.58555	3.0855	0.0015776	-2.7001	-0.0013805	0.38547	0.00019709	511.2987529029928	43.342	0.16552	43.342	43.278	43.443	0					10	6	2	0	0	0	0.54267	1	17355	17355		27.882	1.0861	1	27696			7945	9656	4478	4504	8104	8104					0.07607797762875634
DYKESFNTI	9	Unmodified	_DYKESFNTI_					0	0	0		nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000134317|ENST00000324907|GRHL1;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7647094726562	2	558.764029	1115.5135	1.2892	0.00072037	-0.33943	-0.00018966	0.9498	0.00053071	558.7636016869124	38.038	0.20726	38.038	37.941	38.148	0					27	12	3	0	0	0	0.067603	1	12414	12414		89.029	31.218	1	158720			7946	1693	4479	4505	8105	8105					-0.03963161381511782
DYKESFNTI	9	Unmodified	_DYKESFNTI_					0	0	0		nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000134317|ENST00000324907|GRHL1;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7640991210938	2	558.764029	1115.5135	0.52405	0.00029282	-0.10906	-6.0936E-05	0.415	0.00023188	558.763981757688	38.331	0.27152	38.331	38.258	38.53	0					24	9	4	0	0	0	0.067603	1	14543	14543		89.029	37.836	1	927490			7947	1693	4479	4505	8106	8106					-0.03963161381511782
DYKESFNTI	9	Unmodified	_DYKESFNTI_					0	0	0		nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000134317|ENST00000324907|GRHL1;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7647705078125	2	558.764029	1115.5135	-0.13201	-7.3763E-05	0.26766	0.00014956	0.13565	7.5798E-05	558.7641360973323	38.322	0.23251	38.322	38.213	38.445	0					20	8	3	0	0	0	0.017421	1	15001	15001		126.24	44.002	1	436170			7948	1693	4479	4505	8107	8107					-0.03963161381511782
DYKVAYVQ	8	Unmodified	_DYKVAYVQ_					0	0	0		ENSG00000214026|ENST00000397298|MRPL23;ENST00000462288.5_1_11:1968785-1977647:+|nuORF;ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENSG00000214026|ENST00000397298|MRPL23	ENSG00000214026|ENST00000397298|MRPL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2719421386719	2	493.2531	984.491647	2.7638	0.0013632	-1.8628	-0.00091881	0.90099	0.00044442	493.25211492117273	11.903	0.72963	11.903	11.797	12.526	0					38	21	3	0	0	0	0.72381	1	2624	2624		30.504	1.3541	1	6669000			7949	7805	4480	4506	8108	8108					-0.0012192133942789951
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7;MMP7|p.A35V|1|0.2|ENSG00000137673|chr11:102530597-102530597|G/A|missense_variant;MMP7|p.N51Mfs*5|2|0.18|ENSG00000137673|chr11:102527940-102527940|T/-|frameshift_variant	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	640.8372802734375	2	640.837331	1279.66011	2.9699	0.0019032	-3.1731	-0.0020334	-0.20319	-0.00013021	640.8354591660586	46.412	0.14601	46.412	46.298	46.444	0					11	6	2	0	0	0	0.17854	1	18560	18560		64.207	23.635	1	108160			7950	4181	4481	4507	8109	8109					0.03146560574236901
DYMEVCLL	8	Unmodified	_DYMEVCLL_					0	0	0			REV__nc|ENSG00000189430|O76036-5|NCR1	REV__nc|ENSG00000189430|O76036-5|NCR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2242736816406	2	493.222097	984.42964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.243	1	24.243	23.743	24.743	0								0	0	0	1.7419	1	7128	7128		33.516	5.2613	1		+		7951	21172	4482	4508	8110	8110					-0.06319732074427975
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(110)KTTSNF	0	0	1		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.7420043945312	2	561.742239	1121.46993	1.4376	0.00080756	-0.42325	-0.00023776	1.0143	0.0005698	561.7422007853236	26.545	0.41142	26.545	26.448	26.86	0					28	14	3	0	0	0	0.032383	1	8061	8061		106.68	64.209	1	209540			7952	5807	4483	4509	8111	8111		236			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(97)KTTSNF	0	0	1		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.742919921875	2	561.742239	1121.46993	0.12895	7.2434E-05	0.38988	0.00021901	0.51882	0.00029144	562.2441484448723	26.553	0.25186	26.553	26.461	26.713	0					19	9	3	0	0	0	0.046074	1	8345	8345		96.665	46.641	1	131510			7953	5807	4483	4509	8112	8112		236			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(130)KTTSNF	0	0	1		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.742431640625	2	561.742239	1121.46993	1.8403	0.0010337	-1.8414	-0.0010344	-0.001158	-6.5051E-07	561.7412980170154	26.819	0.36213	26.819	26.661	27.023	0					20	7	4	0	0	0	0.015496	1	9632	9632		129.42	58.043	1	1010800			7954	5807	4483	4509	8113	8113		236			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(110)KTTSNF	0	0	1		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7435913085938	2	561.742239	1121.46993	1.527	0.0008578	-0.50268	-0.00028237	1.0244	0.00057543	561.7420849286412	26.616	0.24089	26.616	26.523	26.764	0					11	5	3	0	0	0	0.032383	1	8586	8586		106.68	46.389	1	197970			7955	5807	4483	4509	8114	8114		236			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(53)KTTSNF	0	0	1		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7426147460938	2	561.742239	1121.46993	0.97631	0.00054843	-0.55033	-0.00030914	0.42598	0.00023929	561.7420319947325	26.613	0.47973	26.613	26.467	26.947	0					20	11	3	0	0	0	0.27123	1	8581	8581		53.089	26.396	1	266550			7956	5807	4483	4509	8115	8115		236			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(190)KTTSNF	0	0	1		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7431640625	2	561.742239	1121.46993	1.1709	0.00065775	-0.24825	-0.00013946	0.92265	0.00051829	561.7421283522507	26.764	0.77013	26.764	26.603	27.373	0					36	15	5	0	0	0	0.00072198	1	9462	9462		185.72	102.43	1	1478200			7957	5807	4483	4509	8116	8116		236			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(160)KTTSNF	0	0	1		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7424926757812	2	561.742239	1121.46993	1.7903	0.0010057	-1.546	-0.00086846	0.24432	0.00013724	561.7415020380474	26.747	0.61709	26.747	26.587	27.204	0					26	12	4	0	0	0	0.0047071	1	9474	9474		159.28	87.898	1	1897800			7958	5807	4483	4509	8117	8117		236			-0.08595094150291516
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.7451171875	2	553.744782	1105.47501	1.4136	0.00078277	-1.0253	-0.00056777	0.38826	0.000215	553.7443591532118	33.407	0.3312	33.407	33.313	33.644	0					30	11	4	0	0	0	0.012936	1	10842	10842		134.77	68.962	1	1227300			7959	5807	4483	4510	8118	8118					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.7447509765625	2	553.744782	1105.47501	1.3151	0.00072823	-1.1238	-0.00062231	0.19128	0.00010592	553.7442558776419	33.402	0.23154	33.402	33.331	33.562	0					16	7	3	0	0	0	0.047855	1	10850	10850		96.034	38.222	1	178510			7960	5807	4483	4510	8119	8119					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7453002929688	2	553.744782	1105.47501	0.61445	0.00034025	-0.20553	-0.00011381	0.40892	0.00022644	553.7448163798693	33.617	0.21358	33.617	33.525	33.739	0					15	5	4	0	0	0	0.037712	1	12453	12453		101.46	50.124	1	859850			7961	5807	4483	4510	8120	8120					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.7451782226562	2	553.744782	1105.47501	0.18043	9.9909E-05	0.16082	8.9053E-05	0.34124	0.00018896	553.7450431101701	33.464	0.39428	33.464	33.361	33.755	0					46	15	5	0	0	0	0.061298	1	11205	11205		91.265	30.971	1	3188800			7962	5807	4483	4510	8121	8121					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7449951171875	2	553.744782	1105.47501	1.6231	0.00089879	-1.3436	-0.000744	0.27954	0.0001548	553.7441774907594	33.649	0.70396	33.649	33.521	34.225	0					46	17	5	0	0	0	1.4602E-05	1	12867	12867		204.42	114.05	1	16376000			7963	5807	4483	4510	8122	8122					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.7452392578125	2	553.744782	1105.47501	1.1397	0.00063109	-0.75496	-0.00041806	0.38472	0.00021303	553.7444843400996	33.455	0.39254	33.455	33.33	33.722	0					30	11	4	0	0	0	0.010427	1	11718	11718		140.11	44.065	1	2757200			7964	5807	4483	4510	8123	8123					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.7450561523438	2	553.744782	1105.47501	-1.167	-0.00064619	1.2822	0.00071	0.11523	6.381E-05	553.7455882001084	33.447	0.39719	33.447	33.344	33.741	0					31	11	4	0	0	0	0.010427	1	11714	11714		140.11	52.358	1	2298400			7965	5807	4483	4510	8124	8124					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7447509765625	2	553.744782	1105.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.56	1	33.56	33.06	34.06	0								0	0	0	0.005321	1	12769	12769		177.3	81.114	1				7966	5807	4483	4510	8125	8125					-0.07350790287682685
DYPSRWTAI	9	Unmodified	_DYPSRWTAI_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7747192382812	2	554.774731	1107.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.496	1	42.496	41.996	42.996	0								0	0	0	0.21054	1	16677	16677		49.442	5.3247	1				7967	7746	4484	4511	8126	8126					-0.014557315621459566
DYSRAAGRPF	10	Unmodified	_DYSRAAGRPF_					0	0	0			REV__ENSG00000077454|ENST00000310300|LRCH4	REV__ENSG00000077454|ENST00000310300|LRCH4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	380.5244140625	3	380.524595	1138.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.351	1	29.351	28.851	29.851	0								0	0	0	0.40063	1	9548	9548		30.318	1.1682	1		+		7968	13263	4485	4512	8127	8127					-0.011778109563465478
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1;FNBP1|p.N328Kfs*2|1|0.11|ENSG00000187239|chr9:129924963-129924964|-/T|frameshift_variant	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7848510742188	2	550.784764	1099.55498	3.7291	0.002054	-1.2627	-0.00069548	2.4664	0.0013585	550.7842391216913	51	0.13928	51	50.913	51.053	0					20	8	3	0	0	0	0.012231	1	20011	20011		136.27	54.028	1	182440			7969	7188	4486	4513	8128	8128					0.009180193778320245
DYTHFTNQ	8	Unmodified	_DYTHFTNQ_					0	0	0		nc|ENSG00000152492|Q8IVM0|CCDC50;ENSG00000152492|ENST00000392455|CCDC50	nc|ENSG00000152492|Q8IVM0|CCDC50	nc|ENSG00000152492|Q8IVM0|CCDC50	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2218017578125	2	513.219788	1024.42502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.838	1	21.838	21.338	22.338	0								0	0	0	1.7419	1	7001	7001		60.294	7.9948	1				7970	5013	4487	4514	8129	8129					-0.08621156901324412
DYVFYTEDKF	10	Unmodified	_DYVFYTEDKF_					0	0	0			REV__ENST00000566887.1_1_18:66356235-66358580:-|nuORF	REV__ENST00000566887.1_1_18:66356235-66358580:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	663.7996826171875	2	663.798069	1325.58158	2.2645	0.0015032	0.20417	0.00013553	2.4687	0.0016387	663.798310227397	28.424	0.21271	28.424	28.319	28.532	0					11	4	3	0	0	0	0.56931	1	10426	10426		37.812	0.21162	1	892390	+		7971	16126	4488	4515	8130	8130					-0.06818336521541823
DYVQSGERTV	10	Unmodified	_DYVQSGERTV_					0	0	0			REV__nc|ENSG00000168658|Q502W6-8|VWA3B	REV__nc|ENSG00000168658|Q502W6-8|VWA3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.2754516601562	2	577.277835	1152.54112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.217	1	29.217	28.717	29.717	0								0	0	0	0.38322	1	10794	10794		35.618	0.46626	1		+		7972	16270	4489	4516	8131	8131					-0.029052581212681616
DYVQVTKSFA	10	Unmodified	_DYVQVTKSFA_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.2972412109375	2	579.295496	1156.57644	1.7321	0.0010034	1.0126	0.00058659	2.7447	0.00159	579.296201684742	45.071	0.1484	45.071	44.989	45.138	0					10	6	2	0	0	0	0.59277	1	18048	18048		35.152	3.6222	1	53710	+		7973	14816	4490	4517	8132	8132					0.00441404406547008
EAAAAALRRVR	11	Unmodified	_EAAAAALRRVR_					0	0	0		ENST00000400929.6_1_1:1198727-1209210:-|nuORF;ENST00000461142.3_1_1:1198606-1209210:-|nuORF	ENST00000400929.6_1_1:1198727-1209210:-|nuORF	ENST00000400929.6_1_1:1198727-1209210:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.24017333984375	3	395.238789	1182.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.94	1	27.94	27.44	28.44	0								0	0	0	0.39826	1	10062	10062		37.508	5.474	1				7974	9249	4491	4518	8133	8133					0.11049821505685031
EAAAAPAVAG	10	Unmodified	_EAAAAPAVAG_					0	0	0		ENST00000310677.8_1_14:24791428-24793534:-|nuORF;ENST00000554577.5_1_14:24791773-24793534:-|nuORF;ENST00000554936.1_1_14:24791773-24792709:-|nuORF	ENST00000310677.8_1_14:24791428-24793534:-|nuORF	ENST00000310677.8_1_14:24791428-24793534:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.21539306640625	2	414.216517	826.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.392	1	24.392	23.892	24.892	0								0	0	0	0.40002	1	7193	7193		30.504	1.3541	1				7975	8550	4492	4519	8134	8134					-0.0016705006205484096
EAAAGPLGCCR	11	Unmodified	_EAAAGPLGCCR_					0	0	0		ENST00000459755.1_1_10:49639201-49643069:+|nuORF;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8	ENST00000459755.1_1_10:49639201-49643069:+|nuORF	ENST00000459755.1_1_10:49639201-49643069:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2399291992188	2	524.239144	1046.46373	0.091747	4.8097E-05	1.3632	0.00071467	1.455	0.00076276	524.2398686538527	15.061	0.19461	15.061	14.967	15.162	0					7	4	2	0	0	0	0.45317	1	3817	3817		47.657	8.8512	1	1176600			7976	2490	4493	4520	8135	8135					-0.05763890862817789
EAAAGRLLL	9	Unmodified	_EAAAGRLLL_					0	0	0		ENSG00000152270|ENST00000282096|PDE3B;nc|ENSG00000152270|Q13370-2|PDE3B;ENST00000534317.1_1_11:14665864-14793584:+|nuORF	ENSG00000152270|ENST00000282096|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2767639160156	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.398	1	32.398	31.898	32.898	0								0	0	0	0.19749	1	11264	11264		51.335	1.8939	1				7977	5007	4494	4521	8136	8136					0.07949777651424483
EAAAPAPIGEL	11	Unmodified	_EAAAPAPIGEL_					0	0	0		nc|ENSG00000114779|Q96IU4-2|ABHD14B;ENST00000487005.1_1_3:52003444-52008077:-|nuORF;ENSG00000114779|ENST00000361143|ABHD14B	nc|ENSG00000114779|Q96IU4-2|ABHD14B	nc|ENSG00000114779|Q96IU4-2|ABHD14B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7783203125	2	519.776939	1037.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.384	1	20.384	19.884	20.884	0								0	0	0	0.4249	1	5721	5721		31.53	1.0262	1				7978	2865	4495	4522	8137	8137					0.022057328607616
EAAARVKV	8	Unmodified	_EAAARVKV_					0	0	0			REV__ENST00000469819.5_1_22:38453534-38461185:+|nuORF	REV__ENST00000469819.5_1_22:38453534-38461185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.25604248046875	2	422.255977	842.497401	1.006	0.00042478	-1.1957	-0.00050491	-0.18978	-8.0136E-05	422.2554617264419	23.316	0.19508	23.316	23.222	23.417	0					7	4	2	0	0	0	0.30437	1	7714	7714		82.305	2.854	1	465100	+		7979	19460	4496	4523	8138	8138					0.06985221962906962
EAAARVKV	8	Unmodified	_EAAARVKV_					0	0	0			REV__ENST00000469819.5_1_22:38453534-38461185:+|nuORF	REV__ENST00000469819.5_1_22:38453534-38461185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.2556457519531	2	422.255977	842.497401	-0.18326	-7.7381E-05	-0.55226	-0.00023319	-0.73551	-0.00031058	422.2556608873111	23.221	0.16744	23.221	23.111	23.279	0					5	3	2	0	0	0	0.32815	1	7981	7981		79.451	13.022	1	258030	+		7980	19460	4496	4523	8139	8139					0.06985221962906962
EAAAVFKTL	9	Unmodified	_EAAAVFKTL_					0	0	0		ENST00000502444.1_1_4:122782546-122791468:-|nuORF;nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.27069091796875	2	475.271293	948.528032	0.31847	0.00015136	-1.18	-0.0005608	-0.86148	-0.00040944	475.27115467932873	38.159	0.20304	38.159	38.072	38.275	0					14	8	2	0	0	0	0.13726	1	14483	14483		70.816	12.586	1	139780			7981	10154	4497	4524	8140	8140					0.051709555572983845
EAAAVFKTL	9	Unmodified	_EAAAVFKTL_					0	0	0		ENST00000502444.1_1_4:122782546-122791468:-|nuORF;nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2709045410156	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.127	1	38.127	37.627	38.627	0								0	0	0	0.024296	1	14946	14946		98.582	24.327	1				7982	10154	4497	4524	8141	8141					0.051709555572983845
EAAAVFKTL	9	Unmodified	_EAAAVFKTL_					0	0	0		ENST00000502444.1_1_4:122782546-122791468:-|nuORF;nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2711181640625	2	475.271293	948.528032	0.73574	0.00034968	-2.5129	-0.0011943	-1.7771	-0.00084461	475.270559547782	38.031	0.39155	38.031	37.974	38.366	0					10	8	2	0	0	0	0.13726	1	14931	14931		70.816	2.0294	1	190390			7983	10154	4497	4524	8142	8142					0.051709555572983845
EAADLKVKK	9	Unmodified	_EAADLKVKK_					0	0	0			REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF	REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.30279541015625	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.032	1	21.032	20.532	21.532	0								0	0	0	0.16876	1	6911	6911		55.504	0.72789	1		+		7984	19029	4498	4525	8143	8143					0.09142315994370165
EAADLLTLE	9	Unmodified	_EAADLLTLE_					0	0	0			REV__ENST00000413452.1_1_2:74185269-74208298:-|nuORF	REV__ENST00000413452.1_1_2:74185269-74208298:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7978210449219	2	487.755672	973.496792	-0.081279	-3.9644E-05	0.56041	0.00027334	0.47913	0.0002337	487.75590621701537	22.526	0.36063	22.526	22.367	22.728	0					17	7	3	0	0	0	0.47038	1	7577	7577		35.618	2.8059	1	380120	+		7985	19016	4499	4526	8144	8144					0.008983377325307629
EAAERSALI	9	Unmodified	_EAAERSALI_					0	0	0			REV__ENST00000579726.5_2_17:61562598-61563979:+|nuORF	REV__ENST00000579726.5_2_17:61562598-61563979:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.26116943359375	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.194	1	37.194	36.694	37.694	0								0	0	0	0.29356	1	14083	14083		36.447	0.82846	1		+		7986	20445	4500	4527	8145	8145					0.027445795465382616
EAAEVARDVK	10	Unmodified	_EAAEVARDVK_					0	0	0			REV__JPH3|p.T482Pfs*127|1|0.4|ENSG00000154118|chr16:87689800-87689800|C/-|frameshift_variant	REV__JPH3|p.T482Pfs*127|1|0.4|ENSG00000154118|chr16:87689800-87689800|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2908935546875	2	544.290745	1086.56694	1.9695	0.001072	-1.4675	-0.00079874	0.502	0.00027324	544.2899545445763	28.182	0.34877	28.182	28.084	28.432	0					22	7	4	0	0	0	0.15477	1	10306	10306		85.862	9.0877	1	1642800	+		7987	15557	4501	4528	8146	8146					0.027116361209891693
EAAFGTTHPV	10	Unmodified	_EAAFGTTHPV_					0	0	0		ENST00000595618.5_2_19:17323713-17323878:+|nuORF	ENST00000595618.5_2_19:17323713-17323878:+|nuORF	ENST00000595618.5_2_19:17323713-17323878:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2542724609375	2	515.253631	1028.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.363	1	39.363	38.863	39.863	0								0	0	0	0.4201	1	15479	15479		21.96	0	1				7988	10999	4502	4529	8147	8147					-0.020397069705268223
EAAGEVRAM	9	Unmodified	_EAAGEVRAM_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2261047363281	2	467.226559	932.438566	-0.702	-0.00032799	-0.31326	-0.00014636	-1.0153	-0.00047436	467.2264935848941	22.955	0.17813	22.955	22.869	23.047	0					8	4	3	0	0	0	0.063823	1	6954	6954		90.37	34.866	1	240710			7989	8261	4503	4530	8148	8148					-0.030356223937360483
EAAGEVRAM	9	Unmodified	_EAAGEVRAM_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.22625732421875	2	467.226559	932.438566	0.61909	0.00028925	-2.1264	-0.00099353	-1.5074	-0.00070428	467.22584581739443	23.125	0.31179	23.125	22.872	23.184	0					12	6	3	0	0	0	0.0792	1	7808	7808		84.916	35.474	1	1465100			7990	8261	4503	4530	8149	8149					-0.030356223937360483
EAAGNMVHV	9	Unmodified	_EAAGNMVHV_					0	0	0		ENSG00000205090|ENST00000378733|TMEM240	ENSG00000205090|ENST00000378733|TMEM240	ENSG00000205090|ENST00000378733|TMEM240	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.22125244140625	2	464.221277	926.428001	0.58561	0.00027185	-0.43372	-0.00020134	0.15189	7.051E-05	464.221052558178	28.295	0.17158	28.295	28.208	28.38	0					7	4	2	0	0	0	0.2873	1	9998	9998		51.335	1.3109	1	217640			7991	7734	4504	4531	8150	8150					-0.03815605048168891
EAAGPHEAF	9	Unmodified	_EAAGPHEAF_					0	0	0		nc|ENSG00000173275|Q6P9G9-3|ZNF449;nc|ENSG00000173275|Q6P9G9-2|ZNF449;ENSG00000173275|ENST00000339249|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.711181640625	2	464.711599	927.408646	-0.48676	-0.0002262	-0.089941	-4.1797E-05	-0.5767	-0.000268	464.71153494261296	25.372	0.36903	25.372	25.264	25.633	0					13	7	3	0	0	0	0.16524	1	8887	8887		65.803	17.888	1	259340			7992	6419	4505	4532	8151	8151					-0.057962380674212
EAAGVLKNPAQ	11	Unmodified	_EAAGVLKNPAQ_					0	0	0			REV__ENSG00000005189|ENST00000261377|REXO5	REV__ENSG00000005189|ENST00000261377|REXO5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.3007202148438	2	549.301113	1096.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.199	1	17.199	16.699	17.699	0								0	0	0	0.43372	1	4266	4266		14.137	0	1		+		7993	12836	4506	4533	8152	8152					0.04324226500648365
EAAINRHR	8	Unmodified	_EAAINRHR_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;ENST00000479495.5_1_3:49140063-49142467:-|nuORF;nc|ENSG00000172053|P47897-2|QARS1	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7660827636719	2	483.765032	965.515511	-0.60615	-0.00029324	3.6518	0.0017666	3.0456	0.0014734	483.7666010337813	22.531	0.13736	22.531	22.459	22.596	0					7	4	2	0	0	0	0.67394	1	6638	6638		19.36	0	1	109270			7994	6343	4507	4534	8153	8153					0.03137356937622826
EAAIWAVY	8	Unmodified	_EAAIWAVY_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7374267578125	2	461.737086	921.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.627	1	11.627	11.127	12.127	0								0	0	0	1.7419	1	2427	2427		24.504	5.144	1		+		7995	14433	4508	4535	8154	8154					-0.004252890225870942
EAAKGTLTY	9	Unmodified	_EAAKGTLTY_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000367857.9_1_6:134495759-134495951:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.24981689453125	2	477.250557	952.486562	3.4973	0.0016691	-3.8914	-0.0018572	-0.39415	-0.00018811	477.2485992002764	25.272	0.16555	25.272	25.196	25.362	0					8	5	2	0	0	0	0.17854	1	7846	7846		64.207	10.856	1	48376			7996	8917	4509	4536	8155	8155					0.008417747979365231
EAAKGTLTY	9	Unmodified	_EAAKGTLTY_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000367857.9_1_6:134495759-134495951:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.25030517578125	2	477.250557	952.486562	-0.11777	-5.6204E-05	-0.75571	-0.00036066	-0.87347	-0.00041687	477.25020068737484	25.511	0.21023	25.511	25.409	25.62	0					7	4	2	0	0	0	0.012915	1	9057	9057		134.81	5.1281	1	765480			7997	8917	4509	4536	8156	8156					0.008417747979365231
EAAKGTLTY	9	Unmodified	_EAAKGTLTY_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000367857.9_1_6:134495759-134495951:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.250244140625	2	477.250557	952.486562	-0.63886	-0.0003049	0.11233	5.361E-05	-0.52653	-0.00025129	477.2506144557905	25.472	0.26672	25.472	25.315	25.582	0					15	5	4	0	0	0	0.011031	1	8911	8911		138.83	34.079	1	832240			7998	8917	4509	4536	8157	8157					0.008417747979365231
EAAKKAAL	8	Unmodified	_EAAKKAAL_					0	0	0		tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2449951171875	2	401.245078	800.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.982	1	14.982	14.482	15.482	0								0	0	0	1.7419	1	3851	3851		44.117	0	1				7999	22698	4510	4537	8158	8158					0.0673841721431927
EAAKLAKMK	9	Unmodified	_EAAKLAKMK_					0	0	0		nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF	nc|ENSG00000110619|P49589-2|CARS1	nc|ENSG00000110619|P49589-2|CARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2947692871094	2	495.294245	988.573937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.921	1	13.921	13.421	14.421	0								0	0	0	0.24724	1	2933	2933		44.117	1.7207	1				8000	2630	4511	4538	8159	8159					0.07919277467874508
EAAKLQTTK	9	Unmodified	_EAAKLQTTK_					0	0	0		RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant;nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2839660644531	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.787	1	27.787	27.287	28.287	0								0	0	0	0.29356	1	8896	8896		36.447	2.2742	1				8001	2434	4512	4539	8160	8160					0.06057439097662609
EAAKPGPAGPA	11	Unmodified	_EAAKPGPAGPA_					0	0	0			REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2568054199219	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.1	1	29.1	28.6	29.6	0								0	0	0	0.3557	1	9445	9445		44.377	7.9304	1		+		8002	14562	4513	4540	8161	8161					0.01412596892100737
EAAKQNVKSL	10	Unmodified	_EAAKQNVKSL_					0	0	0			REV__nc|ENSG00000184432|P35606-2|COPB2	REV__nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.3117065429688	2	544.308938	1086.60332	3.6824	0.0020044	0.77823	0.00042359	4.4606	0.0024279	544.309561147219	37.446	0.55236	37.446	37.187	37.739	0					33	11	4	0	0	0	0.4947	1	14603	14603		41.427	8.6142	1	789220	+		8003	16981	4514	4541	8162	8162					0.06348513017701407
EAAKQQRKE	9	Unmodified	_EAAKQQRKE_					0	0	0		nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.T716Nfs*11|1|0.27|ENSG00000158528|chr7:95250065-95250066|-/A|frameshift_variant;nc|ENSG00000158528|Q9ULJ8|PPP1R9A;PPP1R9A|p.F369*|1|0.04|ENSG00000158528|chr7:94911219-94911244|TCACCTCTCCTGATGCTTCTGCATCC/-|frameshift_variant;PPP1R9A|p.K495Nfs*3|2|0.28|ENSG00000158528|chr7:95111344-95111344|A/-|frameshift_variant;PPP1R9A|p.K592Nfs*5|1|0.07|ENSG00000158528|chr7:95198366-95198366|A/-|frameshift_variant	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7999877929688	2	544.296362	1086.57817	3.6815	0.0020038	0.4065	0.00022126	4.088	0.0022251	544.2962722863069	34.475	0.92448	34.475	33.793	34.717	0					42	19	4	0	0	0	0.11898	1	13205	13205		75.043	5.4157	1	824630			8004	5268	4515	4542	8163	8163					0.03834458215169434
EAAKVGEVY	9	Unmodified	_EAAKVGEVY_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2510070800781	2	483.250557	964.486562	1.1447	0.00055316	-1.1032	-0.0005331	0.041511	2.006E-05	483.24997708722725	26.149	0.27717	26.149	26.043	26.32	0					16	9	2	0	0	0	0.0086566	1	7895	7895		143.89	44.512	1	523530			8005	3751	4516	4543	8164	8164					0.0028977479796594707
EAALASAL	8	Unmodified	_EAALASAL_					0	0	0			REV__ENST00000254616.10_1_11:6503555-6503747:+|nuORF	REV__ENST00000254616.10_1_11:6503555-6503747:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.209716796875	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.587	1	32.587	32.087	33.087	0								0	0	0	1.7419	1	12398	12398		35.201	0	1		+		8006	17977	4517	4544	8165	8165					0.019344490519983992
EAALDEKN	8	Unmodified	_EAALDEKN_					0	0	0		tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2166442871094	2	445.216714	888.418876	-1.1633	-0.00051792	0.88416	0.00039364	-0.27913	-0.00012428	445.21734175823286	31.849	0.36655	31.849	31.732	32.098	0					33	14	3	0	0	0	0.6088	1	10561	10561		47.657	6.8792	1	152110			8007	22713	4518	4545	8166	8166					-0.029796751328490245
EAALFGKV	8	Unmodified	_EAALFGKV_					0	0	0		ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B	ENSG00000185046|ENST00000683438|ANKS1B	ENSG00000185046|ENST00000683438|ANKS1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.73931884765625	2	417.739628	833.464704	1.0586	0.0004422	-1.8767	-0.00078398	-0.81817	-0.00034178	417.7388690939696	34.457	0.29092	34.457	34.372	34.663	0					9	7	2	0	0	0	0.67394	1	12867	12867		37.159	2.9866	1	119270			8008	7059	4519	4546	8167	8167					0.04131014840049829
EAALGPEKK	9	Unmodified	_EAALGPEKK_					0	0	0			REV__nc|ENSG00000182013|Q86V59-2|PNMA8A	REV__nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7662658691406	2	471.766374	941.518196	0.19406	9.1552E-05	-0.88201	-0.0004161	-0.68795	-0.00032455	471.765892760126	24.266	0.28194	24.266	24.09	24.372	0					15	6	3	0	0	0	0.19605	1	8118	8118		62.107	1.1355	1	637700	+		8009	16861	4520	4547	8168	8168					0.04509767551905952
EAAMQTQASLN	11	Unmodified	_EAAMQTQASLN_					0	0	0		sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1;sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.2705688476562	2	582.271695	1162.52884	-0.32633	-0.00019001	-1.393	-0.00081111	-1.7193	-0.0010011	582.2708736726913	23.336	0.5676	23.336	22.978	23.545	0					14	11	2	0	0	0	0.29048	1	8015	8015		54.722	0	1	181540			8010	22473	4521	4548	8169	8169					-0.04592617855973913
EAANEHGT	8	Unmodified	_EAANEHGT_					0	0	0		CDON|p.P586Hfs*28|1|0.1|ENSG00000064309|chr11:126005853-126005853|G/-|frameshift_variant;CDON|p.S875Rfs*8|1|0.36|ENSG00000064309|chr11:125994309-125994309|A/-|frameshift_variant;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON;ENST00000531830.1_1_11:125875536-125880518:-|nuORF	CDON|p.P586Hfs*28|1|0.1|ENSG00000064309|chr11:126005853-126005853|G/-|frameshift_variant	CDON|p.P586Hfs*28|1|0.1|ENSG00000064309|chr11:126005853-126005853|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.6784362792969	2	414.677756	827.34096	0.39249	0.00016276	0.70429	0.00029205	1.0968	0.00045481	414.6782175360602	35.907	0.14837	35.907	35.808	35.956	0					6	4	2	0	0	0	0.70055	1	13960	13960		33.516	0	1	42239			8011	462	4522	4549	8170	8170					-0.07961687998226807
EAANTMVNY	9	Unmodified	_EAANTMVNY_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.72357177734375	2	506.723849	1011.43315	0.81123	0.00041107	-0.13993	-7.0907E-05	0.6713	0.00034016	506.723803600065	34.241	0.19263	34.241	34.197	34.389	0					12	9	2	0	0	0	0.098791	1	11185	11185		79.713	2.9384	1	101600			8012	1048	4523	4550	8171	8171					-0.07211345976213579
EAANTMVNY	9	Unmodified	_EAANTMVNY_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7239990234375	2	506.723849	1011.43315	0.84464	0.000428	-0.42567	-0.00021569	0.41897	0.0002123	506.7236814050451	34.513	0.29245	34.513	34.426	34.718	0					13	7	3	0	0	0	0.021961	1	12853	12853		118.74	12.328	1	204670			8013	1048	4523	4550	8172	8172					-0.07211345976213579
EAANTMVNY	9	Unmodified	_EAANTMVNY_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.723876953125	2	506.723849	1011.43315	0.85247	0.00043197	-1.2546	-0.00063576	-0.40217	-0.00020379	506.723286196168	34.537	0.3706	34.537	34.413	34.783	0					23	9	4	0	0	0	0.011389	1	12864	12864		138.06	44.056	1	991440			8014	1048	4523	4550	8173	8173					-0.07211345976213579
EAANTMVNY	9	Unmodified	_EAANTMVNY_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7236328125	2	506.723849	1011.43315	0.15072	7.6375E-05	-0.42273	-0.00021421	-0.27201	-0.00013783	506.7237728092808	34.54	0.28942	34.54	34.424	34.713	0					20	7	3	0	0	0	0.012231	1	13300	13300		136.27	29.853	1	993820			8015	1048	4523	4550	8174	8174					-0.07211345976213579
EAANTMVNY	9	Unmodified	_EAANTMVNY_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7244567871094	2	506.723849	1011.43315	0.29775	0.00015087	0.16156	8.1867E-05	0.45931	0.00023274	506.724153425706	34.301	0.27049	34.301	34.209	34.48	0					15	9	3	0	0	0	0.0406	1	12119	12119		98.629	4.623	1	148080			8016	1048	4523	4550	8175	8175					-0.07211345976213579
EAANTMVNY	9	Unmodified	_EAANTMVNY_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.72406005859375	2	506.723849	1011.43315	-0.21	-0.00010641	0.24805	0.00012569	0.03805	1.9281E-05	506.7241168318076	34.493	0.4563	34.493	34.294	34.75	0					24	9	4	0	0	0	0.0047071	1	13216	13216		159.28	52.861	1	957970			8017	1048	4523	4550	8176	8176					-0.07211345976213579
EAAPHDIGY	9	Unmodified	_EAAPHDIGY_					0	0	0		ENST00000472519.5_1_2:71300598-71303116:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK	ENST00000472519.5_1_2:71300598-71303116:+|nuORF	ENST00000472519.5_1_2:71300598-71303116:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.72454833984375	2	486.724707	971.43486	0.7007	0.00034105	-1.0903	-0.00053068	-0.38961	-0.00018963	486.7239039971548	27.628	0.54987	27.628	27.542	28.092	0					18	13	2	0	0	0	0.43426	1	9687	9687		38.806	0	1	242330			8018	3368	4524	4551	8177	8177					-0.051999688959540435
EAAPHDIGY	9	Unmodified	_EAAPHDIGY_					0	0	0		ENST00000472519.5_1_2:71300598-71303116:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK	ENST00000472519.5_1_2:71300598-71303116:+|nuORF	ENST00000472519.5_1_2:71300598-71303116:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7245178222656	2	486.724707	971.43486	-0.085808	-4.1765E-05	0.098901	4.8137E-05	0.013092	6.3724E-06	486.72475528818933	27.722	0.3115	27.722	27.569	27.88	0					11	6	2	0	0	0	0.61124	1	10043	10043		18.324	18.324	1	130140			8019	3368	4524	4551	8178	8178					-0.051999688959540435
EAAPVLRSQ	9	Unmodified	_EAAPVLRSQ_					0	0	0			REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.76910400390625	2	485.769448	969.524344	0.83824	0.00040719	-1.2967	-0.00062992	-0.4585	-0.00022273	485.76886315411986	28.801	0.21797	28.801	28.691	28.909	0					8	4	2	0	0	0	0.30841	1	10487	10487		49.536	1.8787	1	963950	+		8020	16264	4525	4552	8179	8179					0.03836285783438598
EAAQKYHKL	9	Unmodified	_EAAQKYHKL_					0	0	0			REV__nc|ENSG00000144451|Q8N0X2-4|SPAG16	REV__nc|ENSG00000144451|Q8N0X2-4|SPAG16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2986450195312	2	544.298373	1086.58219	1.9705	0.0010725	-1.113	-0.00060583	0.85743	0.0004667	544.2976413635772	34.461	1.0059	34.461	33.799	34.805	0					49	19	3	0	0	0	0.2873	1	13293	13293		51.335	3.6781	1	698680	+		8021	21055	4526	4553	8180	8180					0.04236547708865146
EAARLAAAL	9	Unmodified	_EAARLAAAL_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2608337402344	2	443.261259	884.507966	-0.50628	-0.00022441	0.53934	0.00023907	0.033063	1.4656E-05	443.2614079036627	28.445	0.20881	28.445	28.325	28.534	0					8	5	2	0	0	0	0.35021	1	9436	9436		45.972	0	1	121970	+		8022	16692	4527	4554	8181	8181					0.0610920461731439
EAASIYGNGDK	11	Unmodified	_EAASIYGNGDK_					0	0	0			REV__ENST00000585658.1_1_17:68237680-68237866:+|nuORF	REV__ENST00000585658.1_1_17:68237680-68237866:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7651977539062	2	562.76456	1123.51457	0.45506	0.00025609	-0.083835	-4.7179E-05	0.37122	0.00020891	562.7646198860784	21.787	0.52511	21.787	21.55	22.075	0					20	12	2	0	0	0	0.42746	1	6940	6940		49.536	0.094497	1	1062600	+		8023	15217	4528	4555	8182	8182					-0.04224947012608027
EAASKGVLYL	10	Unmodified	_EAASKGVLYL_					0	0	0			REV__ENST00000515837.6_1_11:61159565-61159811:+|nuORF	REV__ENST00000515837.6_1_11:61159565-61159811:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2910766601562	2	525.795132	1049.57571	0.5868	0.00030853	-0.97792	-0.00051419	-0.39113	-0.00020565	525.7943321290923	25.833	0.70337	25.833	25.414	26.117	0					26	11	4	0	0	0	0.60076	1	9007	9007		34.173	0.65696	1	1568800	+		8024	19916	4529	4556	8183	8183					0.052906097574805244
EAATFRDQP	9	Unmodified	_EAATFRDQP_					0	0	0			REV__ENST00000463224.5_1_10:105881848-105882847:+|nuORF	REV__ENST00000463224.5_1_10:105881848-105882847:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7511596679688	2	517.748713	1033.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.46	1	25.46	24.96	25.96	0								0	0	0	0.22284	1	7660	7660		47.657	1.6851	1		+		8025	19393	4530	4557	8184	8184					-0.03252894975912568
EAATIVAVTG	10	Unmodified	_EAATIVAVTG_					0	0	0		nc|ENSG00000132003|Q9H7M6|ZSWIM4;ENSG00000132003|ENST00000590508|ZSWIM4	nc|ENSG00000132003|Q9H7M6|ZSWIM4	nc|ENSG00000132003|Q9H7M6|ZSWIM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2610168457031	2	466.258382	930.502212	-0.13489	-6.2895E-05	-0.45608	-0.00021265	-0.59097	-0.00027554	466.2582124743276	29.725	0.41018	29.725	29.522	29.933	0					25	8	4	0	0	0	0.55603	1	11074	11074		39.253	2.8061	1	2071700			8026	3756	4531	4558	8185	8185					0.03418061315005616
EAATNELMR	9	Unmodified	_EAATNELMR_					0	0	0		nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.750244140625	2	517.750398	1033.48624	0.23424	0.00012128	-0.48414	-0.00025066	-0.2499	-0.00012938	517.7500412599359	25.676	0.11937	25.676	25.565	25.684	0					6	2	3	0	0	0	0.028876	1	9008	9008		110.12	5.6963	1	177790			8027	7435	4532	4559	8186	8186					-0.029159681935425397
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.25189208984375	2	452.252046	902.489538	-0.020486	-9.2648E-06	-0.19952	-9.0235E-05	-0.22001	-9.9499E-05	452.2521334650311	30	0.24706	30	29.902	30.149	0					28	9	4	0	0	0	0.0041499	1	9494	9494		161.9	50.25	1	1244100			8028	3793	4533	4560	8187	8187					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2520446777344	2	452.252046	902.489538	0.67279	0.00030427	-0.50558	-0.00022865	0.16722	7.5624E-05	452.25194798848696	30.286	0.41246	30.286	30.167	30.579	0					37	10	5	0	0	0	0.0016726	1	10881	10881		176.41	51.816	1	8518100			8029	3793	4533	4560	8188	8188					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.25177001953125	2	452.252046	902.489538	-1.1944	-0.00054015	0.72668	0.00032864	-0.46768	-0.00021151	452.25249114313306	30.047	0.32555	30.047	29.927	30.252	0					25	12	3	0	0	0	0.0041499	1	9812	9812		161.9	37.909	1	1056100			8030	3793	4533	4560	8189	8189					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2518615722656	2	452.252046	902.489538	-0.1151	-5.2054E-05	-0.63328	-0.0002864	-0.74837	-0.00033845	452.2518732314957	30.24	0.52116	30.24	30.008	30.529	0					29	11	4	0	0	0	0.00012896	1	11272	11272		191.63	27.781	1	3170700			8031	3793	4533	4560	8190	8190					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2519836425781	2	452.252046	902.489538	0.72071	0.00032594	-1.242	-0.00056168	-0.52126	-0.00023574	452.25160547346013	30.267	0.47032	30.267	29.993	30.464	0					26	10	5	0	0	0	0.0016726	1	11269	11269		176.41	51.816	1	4828300			8032	3793	4533	4560	8191	8191					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2517395019531	2	452.252046	902.489538	0.3727	0.00016855	-0.59694	-0.00026997	-0.22424	-0.00010141	452.2519761272583	30.039	0.27041	30.039	29.94	30.21	0					17	6	4	0	0	0	0.0016726	1	10168	10168		176.41	42.942	1	1046000			8033	3793	4533	4560	8192	8192					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.25177001953125	2	452.252046	902.489538	-0.062599	-2.8311E-05	-0.35901	-0.00016236	-0.4216	-0.00019067	452.25194360238095	30.024	0.33319	30.024	29.929	30.262	0					17	8	3	0	0	0	0.0016726	1	10181	10181		176.41	51.816	1	1299100			8034	3793	4533	4560	8193	8193					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.25177001953125	2	452.252046	902.489538	-2.6137	-0.0011821	2.842	0.0012853	0.22823	0.00010322	452.25340399637145	30.056	0.10569	30.056	29.956	30.062	0					4	2	2	0	0	0	0.0041499	1	10178	10178		161.9	50.25	1	204870			8035	3793	4533	4560	8194	8194					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2518005371094	2	452.252046	902.489538	-0.41126	-0.00018599	0.43303	0.00019584	0.021772	9.8463E-06	452.2523932130215	30.206	0.46086	30.206	29.997	30.458	0					28	9	4	0	0	0	0.00068477	1	11140	11140		186.09	37.883	1	6505300			8036	3793	4533	4560	8195	8195					0.034393266511074216
EAAVAIKAM	9	Unmodified	_EAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.251953125	2	452.252046	902.489538	0.87694	0.0003966	-0.88028	-0.00039811	-0.0033423	-1.5116E-06	452.2518052361212	30.238	0.35949	30.238	30.082	30.441	0					23	7	4	0	0	0	0.0041499	1	11155	11155		161.9	50.25	1	8097500			8037	3793	4533	4560	8196	8196					0.034393266511074216
EAAVREAVAIA	11	Unmodified	_EAAVREAVAIA_					0	0	0			REV__YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	REV__YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.309326171875	2	550.308938	1098.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.302	1	22.302	21.802	22.802	0								0	0	0	0.32997	1	6542	6542		47.96	1.5027	1		+		8038	13009	4534	4561	8197	8197					0.05796513017708094
EADALKHK	8	Unmodified	_EADALKHK_					0	0	0		ENSG00000057663|ENST00000369076|ATG5;nc|ENSG00000057663|Q9H1Y0-2|ATG5;ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant;ATG5|p.N236Efs*9|1|0.28|ENSG00000057663|chr6:106186663-106186664|-/T|frameshift_variant;ENST00000476518.1_1_6:106649790-106727677:-|nuORF	ENSG00000057663|ENST00000369076|ATG5	ENSG00000057663|ENST00000369076|ATG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.2507629394531	2	456.250892	910.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.622	1	17.622	17.122	18.122	0								0	0	0	1.7419	1	5267	5267		40.573	0	1				8039	1297	4535	4562	8198	8198					0.028406142376638854
EADALVALN	9	Unmodified	_EADALVALN_					0	0	0			REV__ENSG00000116685|ENST00000376572|KIAA2013	REV__ENSG00000116685|ENST00000376572|KIAA2013	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.24298095703125	2	458.242732	914.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.741	1	35.741	35.241	36.241	0								0	0	0	0.30504	1	13426	13426		34.173	5.023	1		+		8040	14156	4536	4563	8199	8199					0.010254882809022092
EADEGFFR	8	Unmodified	_EADEGFFR_					0	0	0			REV__MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant	REV__MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.71649169921875	2	485.716882	969.41921	-0.020283	-9.852E-06	-0.42354	-0.00020572	-0.44382	-0.00021557	485.7167122513428	31.515	0.15167	31.515	31.446	31.598	0					10	6	2	0	0	0	0.61938	1	10131	10131		45.952	3.5558	1	78427	+		8041	14035	4537	4564	8200	8200					-0.06672255412979666
EADHITTDV	9	Unmodified	_EADHITTDV_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.73260498046875	2	500.732729	999.450904	-2.1234	-0.0010633	2.8144	0.0014092	0.69094	0.00034598	500.7341214198795	22.774	0.35702	22.774	22.635	22.992	0					27	8	4	0	0	0	0.071197	1	6827	6827		87.754	5.4493	1	965850			8042	2576	4538	4565	8201	8201					-0.04884307449708558
EADHITTDV	9	Unmodified	_EADHITTDV_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7326354980469	2	500.732729	999.450904	2.9221	0.0014632	-2.0837	-0.0010434	0.83838	0.0004198	500.73172749113877	22.914	0.46241	22.914	22.755	23.218	0					28	9	4	0	0	0	0.071197	1	7677	7677		87.754	5.4493	1	6893800			8043	2576	4538	4565	8202	8202					-0.04884307449708558
EADHVFFALP	10	Unmodified	_EADHVFFALP_					0	0	0			REV__ENST00000593176.1_1_17:33464206-33469153:-|nuORF	REV__ENST00000593176.1_1_17:33464206-33469153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.786865234375	2	573.284931	1144.55531	-1.4676	-0.00084133	1.2829	0.00073546	-0.18468	-0.00010587	573.2859365673349	26.451	0.27625	26.451	26.276	26.552	0					13	6	3	0	0	0	0.58896	1	8532	8532		35.618	0	1	98843	+		8044	13204	4539	4566	8203	8203					-0.011185609023186771
EADKIGLLL	9	Unmodified	_EADKIGLLL_					0	0	0		ENST00000485760.5_1_1:58809069-58993004:-|nuORF;ENST00000467509.5_1_1:58881067-58996314:-|nuORF;nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	ENST00000485760.5_1_1:58809069-58993004:-|nuORF	ENST00000485760.5_1_1:58809069-58993004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2920837402344	2	486.292225	970.569897	-1.2409	-0.00060344	0.96232	0.00046797	-0.27858	-0.00013547	486.29262556696705	40.779	0.32058	40.779	40.623	40.943	0					31	13	3	0	0	0	0.27249	1	13598	13598		52.937	1.6012	1	371120			8045	5474	4540	4567	8204	8204					0.08343511245811897
EADKRGLTPL	10	Unmodified	_EADKRGLTPL_					0	0	0		ENST00000472052.1_1_6:160197162-160199858:+|nuORF;ACAT2|p.I298Nfs*19|1|0.21|ENSG00000120437|chr6:159777434-159777435|-/G|frameshift_variant;ENSG00000120437|ENST00000367048|ACAT2;nc|ENSG00000120437|Q9BWD1-2|ACAT2	ENST00000472052.1_1_6:160197162-160199858:+|nuORF	ENST00000472052.1_1_6:160197162-160199858:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.30908203125	2	550.308938	1098.60332	0.19225	0.0001058	0.14144	7.7838E-05	0.3337	0.00018364	550.3088779804621	22.443	0.26503	22.443	22.285	22.55	0					13	5	3	0	0	0	0.46128	1	7586	7586		49.536	1.5765	1	314290			8046	34	4541	4568	8205	8205					0.05796513017708094
EADKTIKVY	9	Unmodified	_EADKTIKVY_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7931518554688	2	533.792589	1065.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.458	1	24.458	23.958	24.958	0								0	0	0	0.072369	1	7629	7629		79.713	26.361	1				8047	6308	4542	4569	8206	8206					0.040463058948716935
EADKTIKVY	9	Unmodified	_EADKTIKVY_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7931518554688	2	533.792589	1065.57063	-1.3121	-0.00070038	2.1874	0.0011676	0.87534	0.00046725	533.7935098599648	24.462	0.17513	24.462	24.372	24.547	0					7	4	2	0	0	0	0.11898	1	7637	7637		75.043	18.322	1	117500			8048	6308	4542	4569	8207	8207					0.040463058948716935
EADLQNAVI	9	Unmodified	_EADLQNAVI_					0	0	0		nc|ENSG00000173960|P68543-2|UBXN2A;UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant;ENSG00000173960|ENST00000309033|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A;UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant	UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7532043457031	2	486.753464	971.492375	-0.31148	-0.00015161	-1.1506	-0.00056008	-1.4621	-0.00071169	486.7535128698196	22.667	0.34257	22.667	22.463	22.805	0					16	8	2	0	0	0	0.12239	1	7413	7413		74.255	2.3776	1	708620			8049	11651;6464	4543	4570	8208	8208					0.005488733096171927
EADPEKKY	8	Unmodified	_EADPEKKY_					0	0	0		nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF	nc|ENSG00000111271|Q6JQN1-2|ACAD10	nc|ENSG00000111271|Q6JQN1-2|ACAD10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2396240234375	2	490.24019	978.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.745	1	34.745	34.245	35.245	0								0	0	0	1.7419	1	12328	12328		55.504	10.973	1				8050	2658	4544	4571	8209	8209					-0.024268155817139814
EADPTAVDPVL	11	Unmodified	_EADPTAVDPVL_					0	0	0		PPRC1|p.G598D|1|0.38|ENSG00000148840|chr10:102140301-102140301|G/A|missense_variant	PPRC1|p.G598D|1|0.38|ENSG00000148840|chr10:102140301-102140301|G/A|missense_variant	PPRC1|p.G598D|1|0.38|ENSG00000148840|chr10:102140301-102140301|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	375.8923034667969	3	376.1924	1125.55537	0.69887	0.00026291	-1.0475	-0.00039405	-0.34861	-0.00013114	376.1918933296637	25.713	0.49107	25.713	25.492	25.983	0					12	8	2	0	0	0	0.56817	1	9191	9191		41.08	10.511	1	44090			8051	11967	4545	4572	8210	8210					-0.0023860569301632495
EADQVPGGPQL	11	Unmodified	_EADQVPGGPQL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.7752685546875	2	555.774928	1109.5353	-1.028	-0.00057132	1.8421	0.0010238	0.81413	0.00045247	555.7758225488133	23.47	0.1852	23.47	23.373	23.558	0					10	4	3	0	0	0	0.1937	1	7175	7175		75.043	8.614	1	469490	+		8052	12879	4546	4573	8211	8211					-0.015083566329394671
EADVFSNLPK	10	Unmodified	_EADVFSNLPK_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;FSHR|p.T555Wfs*89|1|0.07|ENSG00000170820|chr2:48963159-48963160|-/TCCAA|frameshift_variant;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.2894287109375	2	560.287671	1118.56079	0.12486	6.9955E-05	3.2302	0.0018098	3.355	0.0018798	560.289521249744	30.874	0.18039	30.874	30.775	30.956	0					9	6	2	0	0	0	0.56931	1	10176	10176		37.812	1.3648	1	106980			8053	6259	4547	4574	8212	8212					0.0062511788946721936
EAEADHLFL	9	Unmodified	_EAEADHLFL_					0	0	0		ENST00000477118.2_3_1:201762910-201763243:+|nuORF	ENST00000477118.2_3_1:201762910-201763243:+|nuORF	ENST00000477118.2_3_1:201762910-201763243:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.75439453125	2	522.753464	1043.49238	1.6655	0.00087064	-0.53404	-0.00027917	1.1315	0.00059147	522.752944321776	40.014	0.40141	40.014	39.85	40.251	0					31	15	3	0	0	0	0.35045	1	15214	15214		45.952	8.7928	1	95260			8054	9918	4548	4575	8213	8213					-0.027631266903881624
EAEATILEL	9	Unmodified	_EAEATILEL_					0	0	0			REV__ENSG00000135951|ENST00000393483|TSGA10	REV__ENSG00000135951|ENST00000393483|TSGA10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2625427246094	2	494.763497	987.512442	0.69263	0.00034269	-1.5322	-0.00075808	-0.83959	-0.0004154	494.7652123122174	33.404	0.59338	33.404	33.176	33.77	0					53	14	6	0	0	0	0.14603	1	12813	12813		68.787	12.353	1	1503100	+		8055	14834	4549	4576	8214	8214					0.01818624249574441
EAEEIIAEHHQ	11	Unmodified	_EAEEIIAEHHQ_					0	0	0			REV__ENSG00000103021|ENST00000219299|CCDC113	REV__ENSG00000103021|ENST00000219299|CCDC113	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	653.3059692382812	2	653.307123	1304.59969	-1.6497	-0.0010778	-0.49454	-0.00032309	-2.1443	-0.0014009	653.3068074925608	42.051	0.23946	42.051	41.942	42.181	0					9	6	2	0	0	0	0.65797	1	16761	16761		31.634	3.5528	1	56138	+		8056	13659	4550	4577	8215	8215					-0.04042201546826618
EAEGARFICL	10	Unmodified	_EAEGARFICL_					0	0	0		ENST00000546954.1_1_12:120881792-120882053:-|nuORF	ENST00000546954.1_1_12:120881792-120882053:-|nuORF	ENST00000546954.1_1_12:120881792-120882053:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7772216796875	2	554.776416	1107.53828	0.59596	0.00033062	0.080532	4.4677E-05	0.67649	0.0003753	554.7765996315727	30.067	0.48275	30.067	29.801	30.284	0					35	12	4	0	0	0	0.12896	1	10747	10747		90.37	9.9152	1	1542100			8057	10583	4551	4578	8216	8216					-0.011188047797986655
EAEGNKWRL	9	Unmodified	_EAEGNKWRL_					0	0	0		ENST00000253251.12_1_1:10093392-10093464:+|nuORF	ENST00000253251.12_1_1:10093392-10093464:+|nuORF	ENST00000253251.12_1_1:10093392-10093464:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7879028320312	2	551.78563	1101.55671	3.6911	0.0020367	0.16415	9.0574E-05	3.8552	0.0021273	551.785792239523	31.991	0.31786	31.991	31.885	32.203	0					19	6	4	0	0	0	0.071197	1	12027	12027		87.754	2.5935	1	2537100			8058	8250	4552	4579	8217	8217					0.00999073186426358
EAEISTRPCLA	11	Unmodified	_EAEISTRPCLA_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9;nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.2967529296875	2	595.297713	1188.58087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.336	1	34.336	33.836	34.836	0								0	0	0	0.40876	1	12144	12144		35.152	0	1				8059	5196	4553	4580	8218	8218					-0.005874544422113104
EAEKSQLIM	9	Unmodified	_EAEKSQLIM_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1;nc|ENSG00000137312|O75955-2|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.770263671875	2	524.7708	1047.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.645	1	30.645	30.145	31.145	0								0	0	0	0.018211	1	9785	9785		101.6	30.305	1				8060	4159	4554	4581	8219	8219					0.005183731260558488
EAEKSQLIM	9	Unmodified	_EAEKSQLIM_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1;nc|ENSG00000137312|O75955-2|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7711791992188	2	524.7708	1047.52705	1.1566	0.00060696	-0.93602	-0.0004912	0.22059	0.00011576	524.7705704238003	30.767	0.33763	30.767	30.621	30.958	0					25	9	4	0	0	0	0.01768	1	10493	10493		125.81	29.624	1	463760			8061	4159	4554	4581	8220	8220					0.005183731260558488
EAEKSQLIM	9	Unmodified	_EAEKSQLIM_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1;nc|ENSG00000137312|O75955-2|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7695922851562	2	524.7708	1047.52705	3.4367	0.0018035	-4.2005	-0.0022043	-0.7638	-0.00040082	524.7689733223938	30.954	0.51157	30.954	30.646	31.157	0					23	10	3	0	0	0	0.01768	1	11482	11482		125.81	5.193	1	3216000			8062	4159	4554	4581	8221	8221					0.005183731260558488
EAEKVFAVL	9	Unmodified	_EAEKVFAVL_					0	0	0			REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2876892089844	2	503.2844	1004.55425	1.173	0.00059035	4.3928	0.0022108	5.5658	0.0028012	503.28647606520764	38.357	0.44397	38.357	38.251	38.695	0					12	9	2	0	0	0	0.3269	1	15089	15089		47.96	1.9873	1	317090	+		8063	17616	4555	4582	8222	8222					0.0521522472874949
EAELKLRLK	9	Unmodified	_EAELKLRLK_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;MTCL1|p.P1841Lfs*22|1|0.05|ENSG00000168502|chr18:8826071-8826071|C/-|frameshift_variant;MTCL1|p.L1858Wfs*5|1|0.26|ENSG00000168502|chr18:8826125-8826125|C/-|frameshift_variant;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant;MTCL1|p.L694Cfs*5|1|0.37|ENSG00000168502|chr18:8784107-8784107|C/-|frameshift_variant;MTCL1|p.G1084Vfs*116|1|0.23|ENSG00000168502|chr18:8798144-8798144|G/-|frameshift_variant;MTCL1|p.W1259Efs*14|1|0.09|ENSG00000168502|chr18:8813191-8813192|-/GAGCC|frameshift_variant;MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant	nc|ENSG00000168502|Q9Y4B5-2|MTCL1;MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant	MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.3438720703125	2	550.345323	1098.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.715	1	38.715	38.215	39.215	0								0	0	0	0.3368	1	13046	13046		27.882	1.1893	1				8064	6098;11383	4556	4583	8223	8223					0.13070266811109832
EAELLHALAR	10	Unmodified	_EAELLHALAR_					0	0	0			REV__ENSG00000102109|ENST00000218230|PCSK1N	REV__ENSG00000102109|ENST00000218230|PCSK1N	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.8177490234375	2	561.81693	1121.61931	3.4694	0.0019492	-1.25	-0.00070226	2.2194	0.0012469	561.8162343283419	19.508	0.26241	19.508	19.36	19.623	0					8	5	2	0	0	0	0.32758	1	6063	6063		64.207	11.271	1	928200	+		8065	13625	4557	4584	8224	8224					0.06336219254603748
EAELQAKNL	9	Unmodified	_EAELQAKNL_					0	0	0		nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2	nc|ENSG00000084234|Q06481-5|APLP2	nc|ENSG00000084234|Q06481-5|APLP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.275390625	2	508.274564	1014.53457	0.098021	4.9822E-05	2.1559	0.0010958	2.2539	0.0011456	508.2753894002423	41.143	0.093643	41.143	41.073	41.167	0					6	5	2	0	0	0	0.28897	1	14533	14533		51.193	1.6567	1	36401			8066	1713	4558	4585	8225	8225					0.027888487179893673
EAENRVKL	8	Unmodified	_EAENRVKL_					0	0	0		tr|U7T3Z3|U7T3Z3_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00313PE=4SV=1	tr|U7T3Z3|U7T3Z3_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00313PE=4SV=1	tr|U7T3Z3|U7T3Z3_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00313PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.769287109375	2	479.769448	957.524344	0.48201	0.00023125	-1.3142	-0.00063053	-0.83222	-0.00039927	479.768892708679	30.211	0.28907	30.211	30.127	30.416	0					16	7	3	0	0	0	0.29286	1	10862	10862		84.916	2.675	1	688870			8067	22978	4559	4586	8226	8226					0.04388285783431911
EAEQLRRQK	9	Unmodified	_EAEQLRRQK_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.3240966796875	2	579.322911	1156.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.081	1	14.081	13.581	14.581	0								0	0	0	0.36056	1	2928	2928		10.265	0	1				8068	4890	4560	4587	8227	8227					0.05921835997787639
EAERLWLI	8	Unmodified	_EAERLWLI_					0	0	0		LRP2BP|p.A163T|1|0.26|ENSG00000109771|chr4:185374227-185374227|C/T|missense_variant;LRP2BP|p.K257Nfs*24|1|0.12|ENSG00000109771|chr4:185372888-185372888|T/-|frameshift_variant;ENSG00000109771|ENST00000505916|LRP2BP;nc|ENSG00000109771|Q9P2M1-2|LRP2BP	LRP2BP|p.A163T|1|0.26|ENSG00000109771|chr4:185374227-185374227|C/T|missense_variant	LRP2BP|p.A163T|1|0.26|ENSG00000109771|chr4:185374227-185374227|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2911376953125	2	515.290017	1028.56548	1.5074	0.00077674	2.0353	0.0010488	3.5427	0.0018255	515.7918892173943	34.593	1.362	34.593	33.767	35.129	0					55	28	3	0	0	0	0.58597	1	13210	13210		51.335	3.6781	1	563140			8069	2590	4561	4588	8228	8228					0.05234046822897653
EAERSKRLL	9	Unmodified	_EAERSKRLL_					0	0	0			REV__nc|ENSG00000151332|Q9NS73-5|MBIP	REV__nc|ENSG00000151332|Q9NS73-5|MBIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.8839416503906	3	367.884012	1100.63021	-0.19466	-7.1611E-05	0.029781	1.0956E-05	-0.16488	-6.0655E-05	367.88396409105655	22.295	0.46479	22.295	22.19	22.655	0					20	9	3	0	0	0	0.51817	1	7381	7381		23.523	23.523	1	2984200	+		8070	15472	4562	4589	8229	8229					0.08391621628902612
EAESTLYQRLP	11	Unmodified	_EAESTLYQRLP_					0	0	0			REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	653.8357543945312	2	653.835517	1305.65648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.437	1	28.437	27.937	28.937	0								0	0	0	0.45674	1	10419	10419		21.686	2.4231	1		+		8071	19033	4563	4590	8230	8230					0.015878460097155767
EAEVDKLEL	9	Unmodified	_EAEVDKLEL_					0	0	0		ENST00000580541.1_1_17:57232479-57232524:-|nuORF;SKA2|p.K91Nfs*13|1|0.07|ENSG00000182628|chr17:59119343-59119343|T/-|frameshift_variant;ENSG00000182628|ENST00000330137|SKA2	ENST00000580541.1_1_17:57232479-57232524:-|nuORF	ENST00000580541.1_1_17:57232479-57232524:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2744750976562	2	523.274229	1044.53391	0.76414	0.00039986	-0.44011	-0.0002303	0.32403	0.00016956	523.2738583984727	35.978	0.76661	35.978	35.798	36.564	0					122	38	5	0	0	0	0.22377	1	11870	11870		58.782	0	1	13484000			8072	6908	4564	4591	8231	8231					0.013420092782780557
EAEVDKLEL	9	Unmodified	_EAEVDKLEL_					0	0	0		ENST00000580541.1_1_17:57232479-57232524:-|nuORF;SKA2|p.K91Nfs*13|1|0.07|ENSG00000182628|chr17:59119343-59119343|T/-|frameshift_variant;ENSG00000182628|ENST00000330137|SKA2	ENST00000580541.1_1_17:57232479-57232524:-|nuORF	ENST00000580541.1_1_17:57232479-57232524:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2747802734375	2	523.274229	1044.53391	0.36707	0.00019208	0.18632	9.7497E-05	0.55339	0.00028957	523.2742914810187	36.021	0.50882	36.021	35.851	36.36	0					54	23	4	0	0	0	0.44593	1	12168	12168		37.812	0	1	1734000			8073	6908	4564	4591	8232	8232					0.013420092782780557
EAEVGASRAR	10	Unmodified	_EAEVGASRAR_					0	0	0		ENST00000588450.1_1_19:2235759-2236247:-|nuORF	ENST00000588450.1_1_19:2235759-2236247:-|nuORF	ENST00000588450.1_1_19:2235759-2236247:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.27490234375	2	523.272887	1044.53122	1.7925	0.00093795	1.1627	0.00060841	2.9552	0.0015464	523.2734833271646	36.247	0.72451	36.247	36.052	36.777	0					105	21	7	0	0	0	0.23612	1	14225	14225		75.043	3.7476	1	48823000			8074	10924	4565	4592	8233	8233					0.010735986639929251
EAFANVFEKK	10	Unmodified	_EAFANVFEKK_					0	0	0			REV__tr|U7SSY3|U7SSY3_FUSNUDNA-bindingproteinHU-betaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01416PE=3SV=1	REV__tr|U7SSY3|U7SSY3_FUSNUDNA-bindingproteinHU-betaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01416PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	394.8789367675781	3	394.876634	1181.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.785	1	21.785	21.285	22.285	0								0	0	0	0.40063	1	6311	6311		30.318	4.2543	1		+		8075	21885	4566	4593	8234	8234					0.02453397160456916
EAFHCISSF	9	Carbamidomethyl (C)	_EAFHC(Carbamidomethyl (C))ISSF_	EAFHC(1)ISSF		EAFHC(44)ISSF		0	1	0		nc|ENSG00000197044|Q8N8Z8-2|ZNF441;ENSG00000197044|ENST00000357901|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2396240234375	2	549.239667	1096.46478	1.8397	0.0010104	-1.3499	-0.00074143	0.48979	0.00026901	549.2386974694477	39.205	0.1908	39.205	39.11	39.301	0					6	4	2	0	0	0	0.37197	1	15490	15490		44.117	6.9577	1	57841			8076	7416	4567	4594	8235	8235	313				-0.07959353222281607
EAFKAIGTAY	10	Unmodified	_EAFKAIGTAY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.78173828125	2	535.779482	1069.54441	1.2613	0.0006758	0.43718	0.00023423	1.6985	0.00091003	535.7802010574234	35.331	0.25955	35.331	35.263	35.523	0					20	13	2	0	0	0	0.029105	1	11577	11577		118.74	39.292	1	154140			8077	4846	4568	4595	8236	8236					0.0124203672337444
EAFKAIGTAY	10	Unmodified	_EAFKAIGTAY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7798461914062	2	535.779482	1069.54441	2.1835	0.0011699	-1.6432	-0.00088038	0.54037	0.00028952	535.7788836519311	35.615	0.41902	35.615	35.457	35.876	0					35	11	4	0	0	0	0.0090663	1	13344	13344		146.79	59.031	1	1322000			8078	4846	4568	4595	8237	8237					0.0124203672337444
EAFKAIGTAY	10	Unmodified	_EAFKAIGTAY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.780517578125	2	535.779482	1069.54441	1.0707	0.00057368	0.74198	0.00039754	1.8127	0.00097122	535.7798332190073	35.381	0.22849	35.381	35.302	35.531	0					14	8	2	0	0	0	0.056886	1	12596	12596		107.01	19.253	1	140160			8079	4846	4568	4595	8238	8238					0.0124203672337444
EAFKAIGTAY	10	Unmodified	_EAFKAIGTAY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7799682617188	2	535.779482	1069.54441	0.70423	0.00037731	-0.27382	-0.00014671	0.43041	0.00023061	535.7795513293179	35.497	0.56663	35.497	35.381	35.948	0					30	11	4	0	0	0	2.0057E-15	1	13715	13715		223.88	125.25	1	1608200			8080	4846	4568	4595	8239	8239					0.0124203672337444
EAFKAIGTAY	10	Unmodified	_EAFKAIGTAY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7797241210938	2	535.779482	1069.54441	1.9052	0.0010208	-1.7617	-0.00094389	0.14351	7.6892E-05	535.7786507924344	35.526	0.77414	35.526	34.913	35.687	0					29	15	4	0	0	0	0.0016364	1	13709	13709		176.44	77.07	1	2331100			8081	4846	4568	4595	8240	8240					0.0124203672337444
EAFLKMTQK	9	Unmodified	_EAFLKMTQK_					0	0	0			REV__ENST00000489277.5_1_1:28527761-28556683:-|nuORF	REV__ENST00000489277.5_1_1:28527761-28556683:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.29541015625	2	548.296985	1094.57942	0.40287	0.00022089	-2.4731	-0.001356	-2.0702	-0.0011351	548.2951705120211	40.245	0.18704	40.245	40.161	40.348	0					16	10	2	0	0	0	0.28897	1	13473	13473		51.193	1.7511	1	73067	+		8082	14472	4569	4596	8241	8241					0.03590956259677114
EAFLNNQEY	9	Unmodified	_EAFLNNQEY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.2538452148438	2	564.253828	1126.4931	-1.0578	-0.00059685	0.020936	1.1813E-05	-1.0368	-0.00058504	564.254215465127	41.185	0.096092	41.185	41.153	41.249	0					7	5	2	0	0	0	0.25716	1	14547	14547		54.776	13.998	1	48247			8083	2899	4570	4597	8242	8242					-0.06508332041335052
EAFLNNQEY	9	Unmodified	_EAFLNNQEY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.25390625	2	564.253828	1126.4931	1.7391	0.00098132	-1.4785	-0.00083426	0.26063	0.00014706	564.2529711563593	41.375	0.29901	41.375	41.269	41.568	0					15	7	3	0	0	0	0.012936	1	16457	16457		134.77	46.123	1	214350			8084	2899	4570	4597	8243	8243					-0.06508332041335052
EAFREHQQY	9	Unmodified	_EAFREHQQY_					0	0	0		EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.2786865234375	2	604.278169	1206.54179	-0.41704	-0.00025201	1.1818	0.00071411	0.76471	0.0004621	604.2787912016746	21.306	0.31454	21.306	21.204	21.518	0					16	7	3	0	0	0	0.032052	1	6758	6758		107.01	32.752	1	1143300			8085	3838	4571	4598	8244	8244					-0.05322418681566887
EAFREHQQY	9	Unmodified	_EAFREHQQY_					0	0	0		EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.2783203125	2	604.278169	1206.54179	-0.59697	-0.00036073	0.3617	0.00021857	-0.23527	-0.00014217	604.2785984981066	21.006	0.20478	21.006	20.927	21.131	0					18	6	4	0	0	0	0.082776	1	5954	5954		83.647	14.019	1	471860			8086	3838	4571	4598	8245	8245					-0.05322418681566887
EAFREHQQY	9	Unmodified	_EAFREHQQY_					0	0	0		EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.2782592773438	2	604.278169	1206.54179	0.69342	0.00041902	-0.50163	-0.00030313	0.19179	0.0001159	604.2779014148958	21.216	0.56248	21.216	21.112	21.675	0					24	11	4	0	0	0	0.017421	1	7018	7018		126.24	38.546	1	2588700			8087	3838	4571	4598	8246	8246					-0.05322418681566887
EAFRGVHRY	9	Unmodified	_EAFRGVHRY_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.7940673828125	2	567.793789	1133.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.686	1	20.686	20.186	21.186	0								0	0	0	0.022698	1	6458	6458		99.375	30.588	1				8088	7796	4572	4599	8247	8247					0.011581991431967253
EAFRGVHRY	9	Unmodified	_EAFRGVHRY_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.7936401367188	2	567.793789	1133.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.465	1	20.465	19.965	20.965	0								0	0	0	0.05454	1	5759	5759		84.916	23.944	1				8089	7796	4572	4599	8248	8248					0.011581991431967253
EAFRGVHRY	9	Unmodified	_EAFRGVHRY_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.8649597167969	3	378.864952	1133.57303	0.67169	0.00025448	-0.67852	-0.00025707	-0.0068254	-2.5859E-06	378.8647791434753	20.583	2.4114	20.583	20.477	22.889	0					85	48	3	0	0	0	0.43426	1	6553	6553		64.207	27.761	1	3915700			8090	7796	4572	4599	8249	8249					0.011581991431967253
EAFRGVHRY	9	Unmodified	_EAFRGVHRY_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.7938842773438	2	567.793789	1133.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.605	1	20.605	20.105	21.105	0								0	0	0	0.073265	1	6572	6572		79.451	10.664	1				8091	7796	4572	4599	8250	8250					0.011581991431967253
EAFVKNIGV	9	Unmodified	_EAFVKNIGV_					0	0	0			REV__nc|ENSG00000123191|P35670-2|ATP7B	REV__nc|ENSG00000123191|P35670-2|ATP7B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7770690917969	2	488.776742	975.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.987	1	30.987	30.487	31.487	0								0	0	0	0.3304	1	9922	9922		29.15	0.89528	1		+		8092	14356	4573	4600	8251	8251					0.05018357931567152
EAFVKNIGV	9	Unmodified	_EAFVKNIGV_					0	0	0			REV__nc|ENSG00000123191|P35670-2|ATP7B	REV__nc|ENSG00000123191|P35670-2|ATP7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.77703857421875	2	488.776742	975.538931	-0.17909	-8.7536E-05	1.8617	0.00090996	1.6826	0.00082242	488.7775781313008	30.997	0.24202	30.997	30.903	31.145	0					9	6	2	0	0	0	0.2873	1	10632	10632		51.335	8.861	1	89201	+		8093	14356	4573	4600	8252	8252					0.05018357931567152
EAGADKRSP	9	Unmodified	_EAGADKRSP_					0	0	0		ENST00000523302.1_1_8:101225364-101237414:+|nuORF;ENSG00000104450|ENST00000388798|SPAG1	ENST00000523302.1_1_8:101225364-101237414:+|nuORF	ENST00000523302.1_1_8:101225364-101237414:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7354736328125	2	465.735606	929.456658	-0.13675	-6.3689E-05	-0.38281	-0.00017829	-0.51956	-0.00024198	465.7354587077993	12.159	0.10021	12.159	12.068	12.168	0					4	2	2	0	0	0	0.16806	1	2659	2659		65.465	17.506	1	219350			8094	2289	4574	4601	8253	8253					-0.010891641473790514
EAGADPSLR	9	Unmodified	_EAGADPSLR_					0	0	0		ENSG00000154065|ENST00000592179|ANKRD29	ENSG00000154065|ENST00000592179|ANKRD29	ENSG00000154065|ENST00000592179|ANKRD29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2297668457031	2	458.230156	914.445759	0.18883	8.6529E-05	-0.52749	-0.00024171	-0.33866	-0.00015518	458.22986870944237	20.01	0.1132	20.01	19.937	20.05	0					4	2	2	0	0	0	0.24095	1	6143	6143		56.721	1.2168	1	51069			8095	5072	4575	4602	8254	8254					-0.014885665216752386
EAGAFSKLNK	10	Unmodified	_EAGAFSKLNK_					0	0	0		nc|ENSG00000185985|Q9H156-2|SLITRK2;SLITRK2|p.S267Vfs*23|1|0.3|ENSG00000185985|chrX:145823220-145823220|A/-|frameshift_variant;ENSG00000185985|ENST00000335565|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7913208007812	2	532.790381	1063.56621	1.0281	0.00054777	0.46517	0.00024784	1.4933	0.00079561	532.7906290221484	24.62	0.33053	24.62	24.508	24.838	0					19	9	3	0	0	0	0.097781	1	7286	7286		95.815	0	1	911010			8096	11687	4576	4603	8255	8255					0.036968414719467546
EAGARVWY	8	Unmodified	_EAGARVWY_					0	0	0		ENST00000333279.2_1_1:173628559-173638987:-|nuORF	ENST00000333279.2_1_1:173628559-173638987:-|nuORF	ENST00000333279.2_1_1:173628559-173638987:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2370910644531	2	476.237784	950.461016	-0.62512	-0.0002977	-0.044672	-2.1274E-05	-0.66979	-0.00031898	476.2376960522505	36.888	1.0062	36.888	36.529	37.535	0					47	20	4	0	0	0	0.68754	1	14550	14550		35.201	1.6851	1	2291900			8097	8687	4577	4604	8256	8256					-0.01619654933813308
EAGGDAATPD	10	Unmodified	_EAGGDAATPD_					0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.18853759765625	2	452.188154	902.361755	-1.1939	-0.00053987	1.353	0.0006118	0.15909	7.1938E-05	452.18881979061416	24.996	0.16427	24.996	24.904	25.069	0					11	5	3	0	0	0	0.36476	1	7715	7715		60.118	19.546	1	140890			8098	6593	4578	4605	8257	8257					-0.09333142409229822
EAGGDAATPD	10	Unmodified	_EAGGDAATPD_					0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.1884460449219	2	452.188154	902.361755	0.8769	0.00039652	-0.75082	-0.00033951	0.12608	5.7012E-05	452.1880388145865	25.153	0.21983	25.153	25.044	25.264	0					12	4	4	0	0	0	0.41335	1	8785	8785		54.776	8.8244	1	965060			8099	6593	4578	4605	8258	8258					-0.09333142409229822
EAGGVRGRR	9	Unmodified	_EAGGVRGRR_					0	0	0		ENST00000376785.2_1_6:30029124-30029697:+|nuORF	ENST00000376785.2_1_6:30029124-30029697:+|nuORF	ENST00000376785.2_1_6:30029124-30029697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.27130126953125	2	479.270481	956.52641	0.89965	0.00043118	0.85888	0.00041164	1.7585	0.00084281	479.2709361841408	24.521	0.16631	24.521	24.414	24.58	0					6	3	2	0	0	0	0.47038	1	8486	8486		35.618	0	1	379850			8100	9045	4579	4606	8259	8259					0.046407593118942714
EAGIKGAVAL	10	Unmodified	_EAGIKGAVAL_					0	0	0		tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.77630615234375	2	464.776742	927.538931	0.53981	0.00025089	-1.8987	-0.00088246	-1.3589	-0.00063157	464.77610837881946	34.694	0.32925	34.694	34.493	34.822	0					19	8	3	0	0	0	0.24256	1	12958	12958		74.255	2.3776	1	555510			8101	22725	4580	4607	8260	8260					0.07226357931563143
EAGIKVHDV	9	Unmodified	_EAGIKVHDV_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2640686035156	2	484.263999	966.513445	0.66778	0.00032338	-1.0467	-0.00050686	-0.37889	-0.00018348	484.26365158570144	37.446	0.20773	37.446	37.36	37.567	0					12	6	2	0	0	0	0.25716	1	14663	14663		54.776	0	1	162520			8102	6964	4581	4608	8261	8261					0.028848834091377284
EAGKGGRPGLL	11	Unmodified	_EAGKGGRPGLL_					0	0	0		ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.2050476074219	3	352.204974	1053.59309	-0.84138	-0.00029634	0.76742	0.00027029	-0.073958	-2.6048E-05	352.20521517145926	27.905	0.11618	27.905	27.822	27.938	0					6	4	2	0	0	0	0.78104	1	8947	8947		28.577	10.315	1	65449			8103	5792	4582	4609	8262	8262					0.06843950083157324
EAGNILVMPI	10	Unmodified	_EAGNILVMPI_					0	0	0			REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant	REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2971801757812	2	528.791535	1055.56852	1.7431	0.00092175	3.3865	0.0017908	5.1297	0.0027125	529.2956076965437	33.858	0.1656	33.858	33.799	33.964	0					8	4	2	0	0	0	0.39827	1	13012	13012		35.618	4.0885	1	287990	+		8104	14632;13254	4583	4610	8263	8263					0.04295553885413028
EAGPQGCA	8	Unmodified	_EAGPQGCA_					0	0	0		MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant	MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.6525573730469	2	366.652696	731.290839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.57	1	45.57	45.07	46.07	0								0	0	0	1.7419	1	16946	16946		38.806	10.552	1				8105	5956	4584	4611	8264	8264					-0.08555513927740321
EAGPRDGKAL	10	Unmodified	_EAGPRDGKAL_					0	0	0		ENST00000452404.6_1_3:196669203-196669296:-|nuORF;ENST00000411704.1_1_3:196668391-196669296:-|nuORF	ENST00000452404.6_1_3:196669203-196669296:-|nuORF	ENST00000452404.6_1_3:196669203-196669296:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2721862792969	2	507.272355	1012.53016	-0.087861	-4.4569E-05	-0.44124	-0.00022383	-0.5291	-0.0002684	507.2720624664011	28.365	0.27531	28.365	28.21	28.485	0					14	9	2	0	0	0	0.58189	1	8857	8857		36.447	0.82846	1	106850			8106	9312	4585	4612	8265	8265					0.024393842950985345
EAGPSIVH	8	Unmodified	_EAGPSIVH_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.21148681640625	2	405.211235	808.407917	0.653	0.0002646	-0.21374	-8.661E-05	0.43926	0.00017799	405.21100649171865	23.252	0.23366	23.252	23.107	23.34	0					8	5	2	0	0	0	0.68754	1	7677	7677		35.201	5.3592	1	56338			8107	2493	4586	4613	8266	8266					-0.003950327164716327
EAGRGEGRAK	10	Unmodified	_EAGRGEGRAK_					0	0	0			REV__ENST00000396212.6_1_16:19535341-19537178:+|nuORF	REV__ENST00000396212.6_1_16:19535341-19537178:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7734985351562	2	515.773054	1029.53155	1.2136	0.00062593	1.9907	0.0010268	3.2043	0.0016527	515.7742013044658	15.576	0.66764	15.576	15.241	15.909	0					25	16	2	0	0	0	0.39827	1	4044	4044		56.434	5.2411	1	867640	+		8108	18896	4587	4614	8267	8267					0.017970183838542653
EAGSYEMTNQ	10	Oxidation (M)	_EAGSYEM(Oxidation (M))TNQ_		EAGSYEM(1)TNQ		EAGSYEM(49)TNQ	0	0	1		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.22705078125	2	573.22441	1144.43427	3.3614	0.0019269	-0.31235	-0.00017905	3.0491	0.0017478	573.2250244117376	26.81	0.46614	26.81	26.671	27.137	0					33	9	5	0	0	0	0.46215	1	9514	9514		49.442	7.0454	1	1443600			8109	4194	4588	4615	8268	8268		171			-0.13217176397984076
EAGTPIKKM	9	Oxidation (M)	_EAGTPIKKM(Oxidation (M))_		EAGTPIKKM(1)		EAGTPIKKM(41)	0	0	1			REV__ENST00000547697.6_1_12:51844670-51855120:+|nuORF	REV__ENST00000547697.6_1_12:51844670-51855120:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7685241699219	2	495.76806	989.521567	0.7342	0.00036399	-0.64946	-0.00032198	0.084744	4.2014E-05	495.7679211741225	37.221	0.19316	37.221	37.142	37.335	0					13	5	3	0	0	0	0.41113	1	14139	14139		40.778	7.9657	1	171800	+		8110	13032	4589	4616	8269	8269		504			0.02638694334268621
EAGTTRTF	8	Unmodified	_EAGTTRTF_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;TACC2|p.E1974Rfs*22|1|0.37|ENSG00000138162|chr10:122195118-122195119|-/C|frameshift_variant	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.7203369140625	2	441.719424	881.424296	0.50495	0.00022305	0.23649	0.00010446	0.74144	0.00032751	441.71947001406255	36.739	0.20012	36.739	36.638	36.839	0					8	6	2	0	0	0	0.64144	1	14325	14325		42.396	3.59	1	95914			8111	4235	4590	4617	8270	8270					-0.021159515503882176
EAHHVIKL	8	Unmodified	_EAHHVIKL_					0	0	0			REV__nc|ENSG00000151388|P58397-3|ADAMTS12	REV__nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7783508300781	2	473.777077	945.5396	3.6769	0.001742	-0.97318	-0.00046107	2.7038	0.001281	473.77670859754954	21.758	0.32465	21.758	21.643	21.968	0					22	9	4	0	0	0	0.57802	1	6291	6291		52.299	4.3836	1	2273000	+		8112	15474	4591	4618	8271	8271					0.06465197371267095
EAHILRVLP	9	Unmodified	_EAHILRVLP_					0	0	0		ENG|p.Y258Lfs*76|1|0.4|ENSG00000106991|chr9:127825275-127825276|-/G|frameshift_variant;ENG|p.N286Tfs*73|1|0.3|ENSG00000106991|chr9:127824934-127824934|T/-|frameshift_variant;ENG|p.G400Vfs*21|1|0.34|ENSG00000106991|chr9:127819973-127819973|C/-|frameshift_variant;nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG	ENG|p.Y258Lfs*76|1|0.4|ENSG00000106991|chr9:127825275-127825276|-/G|frameshift_variant	ENG|p.Y258Lfs*76|1|0.4|ENSG00000106991|chr9:127825275-127825276|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.8818054199219	3	349.881831	1046.62366	-0.81828	-0.0002863	0.1324	4.6324E-05	-0.68588	-0.00023998	349.8819358545499	20.273	0.15811	20.273	20.214	20.372	0					8	5	2	0	0	0	0.55379	1	5634	5634		26.693	2.1737	1	58442			8113	917	4592	4619	8272	8272					0.10221728468172842
EAIALAEKY	9	Unmodified	_EAIALAEKY_					0	0	0		ENSG00000069974|ENST00000336787|RAB27A	ENSG00000069974|ENST00000336787|RAB27A	ENSG00000069974|ENST00000336787|RAB27A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.274169921875	2	504.274032	1006.53351	-0.06247	-3.1502E-05	0.77602	0.00039132	0.71355	0.00035982	504.2743280731135	34.351	0.28287	34.351	34.185	34.468	0					27	13	3	0	0	0	0.24095	1	11208	11208		56.721	6.6965	1	134050			8114	1439	4593	4620	8273	8273					0.030506343490856125
EAIALAEKY	9	Unmodified	_EAIALAEKY_					0	0	0		ENSG00000069974|ENST00000336787|RAB27A	ENSG00000069974|ENST00000336787|RAB27A	ENSG00000069974|ENST00000336787|RAB27A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.27398681640625	2	504.274032	1006.53351	-0.83194	-0.00041953	1.3514	0.0006815	0.5195	0.00026197	504.27461649881195	34.401	0.26482	34.401	34.285	34.55	0					20	11	3	0	0	0	0.035062	1	11596	11596		104.06	16.36	1	285950			8115	1439	4593	4620	8274	8274					0.030506343490856125
EAIALAEKY	9	Unmodified	_EAIALAEKY_					0	0	0		ENSG00000069974|ENST00000336787|RAB27A	ENSG00000069974|ENST00000336787|RAB27A	ENSG00000069974|ENST00000336787|RAB27A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2739562988281	2	504.274032	1006.53351	1.0315	0.00052015	-0.77882	-0.00039274	0.25267	0.00012741	504.27369647789646	34.577	0.47892	34.577	34.454	34.933	0					30	13	4	0	0	0	0.0049871	1	13348	13348		158.07	39.332	1	1455200			8116	1439	4593	4620	8275	8275					0.030506343490856125
EAIASVAVL	9	Unmodified	_EAIASVAVL_					0	0	0			REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.75823974609375	2	436.758018	871.501483	0.89351	0.00039025	-0.91927	-0.0004015	-0.025762	-1.1252E-05	436.75788116250834	34.598	0.15138	34.598	34.474	34.625	0					9	6	2	0	0	0	0.45358	1	11314	11314		37.159	0	1	27330	+		8117	15241	4594	4621	8276	8276					0.060592666659431416
EAIASVAVL	9	Unmodified	_EAIASVAVL_					0	0	0			REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7573547363281	2	436.758018	871.501483	0.23672	0.00010339	-0.75478	-0.00032966	-0.51805	-0.00022626	436.7576384562781	34.573	0.13051	34.573	34.486	34.617	0					10	5	2	0	0	0	0.25109	1	11294	11294		55.504	0	1	48635	+		8118	15241	4594	4621	8277	8277					0.060592666659431416
EAIAVCLHIQ	10	Unmodified	_EAIAVCLHIQ_					0	0	0		ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant;ADAMTSL3|p.F1172Yfs*20|1|0.12|ENSG00000156218|chr15:83983142-83983143|-/A|frameshift_variant;ADAMTSL3|p.R1207Gfs*32|1|0.3|ENSG00000156218|chr15:83983243-83983243|A/-|frameshift_variant;ADAMTSL3|p.H1300Ifs*18|1|0.33|ENSG00000156218|chr15:83991138-83991138|C/-|frameshift_variant;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7974243164062	2	548.794609	1095.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.543	1	13.543	13.043	14.043	0								0	0	0	0.3639	1	3105	3105		40.778	9.2484	1				8119	63	4595	4622	8278	8278					0.03070072116929623
EAICSSTKL	9	Unmodified	_EAICSSTKL_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.248046875	2	476.244418	950.474282	2.2764	0.0010841	0.9751	0.00046439	3.2515	0.0015485	476.24497378751255	26.198	0.56966	26.198	25.966	26.536	0					23	11	3	0	0	0	0.1115	1	9253	9253		76.774	5.4784	1	925110			8120	6453	4596	4623	8279	8279					-0.002935849367531773
EAIEQVSKI	9	Unmodified	_EAIEQVSKI_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;REV__nc|ENSG00000151914|Q03001-13|DST;REV__nc|ENSG00000151914|Q03001-3|DST	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7846984863281	2	508.784764	1015.55498	-0.020991	-1.068E-05	0.25667	0.00013059	0.23568	0.00011991	508.7848600720001	33.599	0.45465	33.599	33.327	33.782	0					38	11	6	0	0	0	0.016683	1	12434	12434		127.46	1.7488	1	2376100	+		8121	12745;21064;19954	4597	4624	8280	8280					0.04782019377819324
EAIERRRR	8	Unmodified	_EAIERRRR_					0	0	0			REV__nc|ENSG00000137776|Q9NWH9-3|SLTM	REV__nc|ENSG00000137776|Q9NWH9-3|SLTM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.3179931640625	2	543.317963	1084.62137	0.32047	0.00017412	-4.0801	-0.0022168	-3.7596	-0.0020427	543.3156225090638	20.305	0.21652	20.305	20.195	20.412	0					8	4	2	0	0	0	0.54629	1	6551	6551		55.504	2.5675	1	145570	+		8122	14935	4598	4625	8281	8281					0.08244692783091523
EAIGAVIHY	9	Unmodified	_EAIGAVIHY_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7615661621094	2	486.761092	971.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.907	1	37.907	37.407	38.407	0								0	0	0	0.10093	1	12387	12387		71.378	28.903	1				8123	1099	4599	4626	8282	8282					0.020737848974818007
EAIGAVIHY	9	Unmodified	_EAIGAVIHY_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.76104736328125	2	486.761092	971.507631	0.70754	0.0003444	0.66412	0.00032327	1.3717	0.00066767	486.7603709955835	38.176	0.39152	38.176	38.01	38.402	0					31	16	3	0	0	0	0.024471	1	14491	14491		114.6	20.59	1	199410			8124	1099	4599	4626	8283	8283					0.020737848974818007
EAIGAVIHY	9	Unmodified	_EAIGAVIHY_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7613830566406	2	486.761092	971.507631	-1.2423	-0.00060472	0.65211	0.00031742	-0.59023	-0.0002873	486.7615294316712	37.952	0.092758	37.952	37.915	38.008	0					8	5	2	0	0	0	0.25726	1	12810	12810		54.765	6.8491	1	69672			8125	1099	4599	4626	8284	8284					0.020737848974818007
EAIGAVIHY	9	Unmodified	_EAIGAVIHY_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.76092529296875	2	486.761092	971.507631	0.63423	0.00030872	2.5143	0.0012238	3.1485	0.0015326	486.76049805282554	38.206	0.49459	38.206	37.985	38.48	0					50	17	5	0	0	0	0.038924	1	14957	14957		100.27	48.937	1	453990			8126	1099	4599	4626	8285	8285					0.020737848974818007
EAIGAVIHY	9	Unmodified	_EAIGAVIHY_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7605895996094	2	486.761092	971.507631	-0.54147	-0.00026357	3.1826	0.0015492	2.6412	0.0012856	486.7610056538204	38.054	0.28272	38.054	37.904	38.186	0					17	6	4	0	0	0	0.024471	1	14955	14955		114.6	43.3	1	177790			8127	1099	4599	4626	8286	8286					0.020737848974818007
EAIGAVIHY	9	Unmodified	_EAIGAVIHY_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.76043701171875	2	486.761092	971.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.145	1	38.145	37.645	38.645	0								0	0	0	0.039704	1	14974	14974		90.939	22.093	1				8128	1099	4599	4626	8287	8287					0.020737848974818007
EAIGLAYIV	9	Unmodified	_EAIGLAYIV_					0	0	0			REV__tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	REV__tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7733154296875	2	474.773668	947.532783	0.71517	0.00033954	-1.2444	-0.00059079	-0.52919	-0.00025124	474.77311263908126	35.971	0.3137	35.971	35.768	36.081	0					10	6	2	0	0	0	0.50461	1	13928	13928		31.955	0	1	344460	+		8129	21757	4600	4627	8288	8288					0.05691839700034507
EAIILRKSM	9	Unmodified	_EAIILRKSM_					0	0	0			REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.31298828125	2	530.812802	1059.61105	0.40989	0.00021757	-2.0292	-0.0010771	-1.6193	-0.00085957	530.8117463388411	30.554	0.11588	30.554	30.494	30.61	0					6	4	2	0	0	0	0.28504	1	9751	9751		36.447	8.5645	1	44344	+		8130	22026	4601	4628	8289	8289					0.08362949013621801
EAIKILKGEY	10	Unmodified	_EAIKILKGEY_					0	0	0		nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF;nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-2|DDX1	nc|ENSG00000079785|Q92499-2|DDX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.3370971679688	2	582.337164	1162.65977	1.3116	0.00076381	-0.52384	-0.00030505	0.78779	0.00045876	582.3367540359527	33.223	0.24302	33.223	33.147	33.39	0					15	6	3	0	0	0	0.0065579	1	12260	12260		150.81	22.208	1	450440			8131	1629	4602	4629	8290	8290					0.08495140854392957
EAIKILKGEY	10	Unmodified	_EAIKILKGEY_					0	0	0		nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF;nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-2|DDX1	nc|ENSG00000079785|Q92499-2|DDX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.3382568359375	2	582.337164	1162.65977	0.12404	7.2232E-05	1.0923	0.00063609	1.2164	0.00070833	582.3377648364728	33.159	0.30563	33.159	33.059	33.365	0					13	6	3	0	0	0	0.007513	1	12567	12567		145.46	16.858	1	706690			8132	1629	4602	4629	8291	8291					0.08495140854392957
EAIKILKGEY	10	Unmodified	_EAIKILKGEY_					0	0	0		nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF;nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-2|DDX1	nc|ENSG00000079785|Q92499-2|DDX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.3373413085938	2	582.337164	1162.65977	1.6602	0.00096682	-0.89413	-0.00052069	0.76611	0.00044614	582.3364812768796	33.143	0.25657	33.143	33.091	33.348	0					12	5	3	0	0	0	0.06561	1	12605	12605		112.3	23.267	1	807370			8133	1629	4602	4629	8292	8292					0.08495140854392957
EAINQYLL	8	Unmodified	_EAINQYLL_					0	0	0			REV__ENSG00000185985|ENST00000335565|SLITRK2	REV__ENSG00000185985|ENST00000335565|SLITRK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2601623535156	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.564	1	39.564	39.064	40.064	0								0	0	0	1.7419	1	15567	15567		40.573	1.3198	1		+		8134	17061	4603	4630	8293	8293					0.02454365177618456
EAIQRTEAY	9	Unmodified	_EAIQRTEAY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.77001953125	2	540.769645	1079.52474	1.9125	0.0010342	-0.93456	-0.00050538	0.97799	0.00052886	540.7691534509944	24.294	0.24105	24.294	24.131	24.372	0					9	5	2	0	0	0	0.0049871	1	8158	8158		158.07	73.159	1	535480			8135	4828	4604	4631	8294	8294					-0.011843392873743142
EAIQRTEAY	9	Unmodified	_EAIQRTEAY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7698364257812	2	540.769645	1079.52474	1.3892	0.00075123	-0.4635	-0.00025065	0.92569	0.00050059	540.7691816943739	24.27	0.16319	24.27	24.163	24.326	0					5	3	2	0	0	0	0.0792	1	8489	8489		84.916	19.018	1	178000			8136	4828	4604	4631	8295	8295					-0.011843392873743142
EAIQRTEAY	9	Unmodified	_EAIQRTEAY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7695922851562	2	540.769645	1079.52474	2.1391	0.0011567	-0.72411	-0.00039158	1.415	0.00076517	540.768217124134	24.102	0.14933	24.102	24.006	24.155	0					5	3	2	0	0	0	0.071197	1	7454	7454		87.754	13.78	1	60358			8137	4828	4604	4631	8296	8296					-0.011843392873743142
EAIQRTEAY	9	Unmodified	_EAIQRTEAY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7701416015625	2	540.769645	1079.52474	0.65837	0.00035602	-0.052116	-2.8183E-05	0.60625	0.00032784	540.7696214094875	24.236	0.2164	24.236	24.13	24.347	0					9	4	3	0	0	0	0.0040894	1	8319	8319		162.25	79.947	1	458150			8138	4828	4604	4631	8297	8297					-0.011843392873743142
EAIRANFLL	9	Unmodified	_EAIRANFLL_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8017578125	2	523.803291	1045.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.232	1	16.232	15.732	16.732	0								0	0	0	0.18645	1	4598	4598		45.952	0	1		+		8139	15972	4605	4632	8298	8298					0.07105735714230832
EAIREAVVY	9	Unmodified	_EAIREAVVY_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2852172851562	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.162	1	33.162	32.662	33.662	0								0	0	0	0.061959	1	12672	12672		76.774	5.4784	1				8140	1644	4606	4633	8299	8299					0.03297439097673305
EAIRISPTF	9	Unmodified	_EAIRISPTF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2876586914062	2	517.287474	1032.5604	1.2865	0.00066547	-1.0858	-0.00056169	0.20062	0.00010378	517.2869896034872	40.803	0.082802	40.803	40.725	40.807	0					7	4	2	0	0	0	0.37197	1	15543	15543		44.117	1.6423	1	134500			8141	4769	4607	4634	8300	8300					0.04541742960282136
EAIRISPTF	9	Unmodified	_EAIRISPTF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2879028320312	2	517.287474	1032.5604	0.029169	1.5089E-05	0.25579	0.00013232	0.28496	0.00014741	517.2876119591829	40.605	0.19508	40.605	40.519	40.714	0					16	11	2	0	0	0	0.17854	1	13575	13575		64.207	6.396	1	84323			8142	4769	4607	4634	8301	8301					0.04541742960282136
EAIRISPTF	9	Unmodified	_EAIRISPTF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2897338867188	2	517.287474	1032.5604	0.86915	0.0004496	1.4862	0.0007688	2.3554	0.0012184	517.288333969447	40.561	0.1454	40.561	40.506	40.651	0					14	8	2	0	0	0	0.13267	1	14397	14397		71.877	22.436	1	47475			8143	4769	4607	4634	8302	8302					0.04541742960282136
EAIRISPTF	9	Unmodified	_EAIRISPTF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2879028320312	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.545	1	40.545	40.045	41.045	0								0	0	0	0.091069	1	14395	14395		74.255	20.904	1				8144	4769	4607	4634	8303	8303					0.04541742960282136
EAIRISPTF	9	Unmodified	_EAIRISPTF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2877197265625	2	517.287474	1032.5604	1.5496	0.00080161	-0.9968	-0.00051563	0.55284	0.00028597	517.2869150970388	40.709	0.45454	40.709	40.619	41.074	0					14	8	2	0	0	0	0.0080613	1	16194	16194		145.16	57.459	1	1096100			8145	4769	4607	4634	8304	8304					0.04541742960282136
EAIRISPTF	9	Unmodified	_EAIRISPTF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2874755859375	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.715	1	40.715	40.215	41.215	0								0	0	0	0.0014292	1	16187	16187		146.79	67.073	1				8146	4769	4607	4634	8305	8305					0.04541742960282136
EAIRTRVP	8	Unmodified	_EAIRTRVP_					0	0	0			REV__ENST00000534695.5_1_11:43333622-43340191:+|nuORF	REV__ENST00000534695.5_1_11:43333622-43340191:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.77728271484375	2	471.279983	940.545414	0.1778	8.3796E-05	-1.3962	-0.000658	-1.2184	-0.0005742	471.27967430197526	19.133	0.5954	19.133	18.896	19.492	0					35	14	4	0	0	0	0.67394	1	5673	5673		37.159	2.9866	1	4514100	+		8147	19069	4608	4635	8306	8306					0.0727629588294576
EAISAIAKI	9	Unmodified	_EAISAIAKI_					0	0	0			REV__nc|ENSG00000085276|Q03112-8|MECOM	REV__nc|ENSG00000085276|Q03112-8|MECOM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2791748046875	2	458.279118	914.543683	0.058691	2.6897E-05	-0.066618	-3.053E-05	-0.0079274	-3.6329E-06	458.27908567339927	34.082	0.19284	34.082	34.013	34.206	0					14	8	2	0	0	0	0.35021	1	11120	11120		45.972	3.5761	1	151400	+		8148	13354	4609	4636	8307	8307					0.08299242074338053
EAISKAEAY	9	Unmodified	_EAISKAEAY_					0	0	0		nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-4|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-6|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;ENSG00000170011|ENST00000302541|MYRIP	nc|ENSG00000170011|Q8NFW9-5|MYRIP	nc|ENSG00000170011|Q8NFW9-5|MYRIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2483215332031	2	491.248015	980.481476	0.46327	0.00022758	0.7107	0.00034913	1.174	0.00057671	491.24828809538263	24.764	0.10309	24.764	24.67	24.773	0					4	2	2	0	0	0	0.048471	1	8368	8368		95.815	31.608	1	73852			8149	6205	4610	4637	8308	8308					-0.009545290646656213
EAISKAEAY	9	Unmodified	_EAISKAEAY_					0	0	0		nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-4|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-6|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;ENSG00000170011|ENST00000302541|MYRIP	nc|ENSG00000170011|Q8NFW9-5|MYRIP	nc|ENSG00000170011|Q8NFW9-5|MYRIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2476501464844	2	491.248015	980.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.75	1	24.75	24.25	25.25	0								0	0	0	0.035155	1	8699	8699		93.195	21.9	1				8150	6205	4610	4637	8309	8309					-0.009545290646656213
EAISQSTQF	9	Unmodified	_EAISQSTQF_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.74432373046875	2	505.743096	1009.47164	0.81602	0.00041269	-0.97912	-0.00049518	-0.16311	-8.2489E-05	505.7426528979751	34.881	0.31464	34.881	34.772	35.087	0					13	8	2	0	0	0	0.13726	1	13030	13030		70.816	12.034	1	162680			8151	854	4611	4638	8310	8310					-0.03271717070026625
EAISQSTQF	9	Unmodified	_EAISQSTQF_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7426452636719	2	505.743096	1009.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.887	1	34.887	34.387	35.387	0								0	0	0	0.084509	1	13481	13481		76.17	12.863	1				8152	854	4611	4638	8311	8311					-0.03271717070026625
EAISTHNAL	9	Unmodified	_EAISTHNAL_					0	0	0			REV__VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	REV__VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.24542236328125	2	478.245806	954.47706	-2.9007	-0.0013873	1.9339	0.0009249	-0.9668	-0.00046237	478.2467505097122	29.249	0.1784	29.249	29.159	29.337	0					10	4	3	0	0	0	0.26904	1	9823	9823		53.351	0	1	301200	+		8153	15044	4612	4639	8312	8312					-0.001999934875584586
EAITQRARQ	9	Unmodified	_EAITQRARQ_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7953491210938	2	536.796529	1071.5785	0.29237	0.00015694	-2.7117	-0.0014556	-2.4193	-0.0012987	536.7950836562921	21.299	0.16573	21.299	21.192	21.357	0					5	3	2	0	0	0	0.28897	1	7054	7054		27.882	0	1	276670	+		8154	14500	4613	4640	8313	8313					0.045578779349852994
EAKADAIL	8	Unmodified	_EAKADAIL_					0	0	0			REV__SLK|p.E306D|1|0.29|ENSG00000065613|chr10:104001497-104001497|G/T|missense_variant	REV__SLK|p.E306D|1|0.29|ENSG00000065613|chr10:104001497-104001497|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.7343444824219	2	415.734543	829.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.343	1	23.343	22.843	23.843	0								0	0	0	1.7419	1	7109	7109		34.173	2.6427	1		+		8155	21542	4614	4641	8314	8314					0.03298407114800739
EAKDNIYK	8	Unmodified	_EAKDNIYK_					0	0	0		tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.755859375	2	490.756007	979.497461	0.81761	0.00040125	-1.7058	-0.00083711	-0.88815	-0.00043586	490.75521605985847	22.2	0.28052	22.2	22.075	22.355	0					11	6	3	0	0	0	0.48092	1	7177	7177		62.107	1.1355	1	346290			8156	22964	4615	4642	8315	8315					0.006891771722166595
EAKEEELKK	9	Unmodified	_EAKEEELKK_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.306640625	2	552.300778	1102.587	3.6654	0.0020244	4.1803	0.0023088	7.8458	0.0043332	552.3045485656829	17.013	0.31231	17.013	16.812	17.124	0					21	6	5	0	0	0	0.07136	1	4841	4841		87.696	11.527	1	1401500	+		8157	16062	4616	4643	8316	8316					0.03981387060935049
EAKFGARR	8	Unmodified	_EAKFGARR_					0	0	0		ENSG00000028839|ENST00000237264|TBPL1	ENSG00000028839|ENST00000237264|TBPL1	ENSG00000028839|ENST00000237264|TBPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.763427734375	2	467.764501	933.514448	-1.0454	-0.00048901	-0.92148	-0.00043103	-1.9669	-0.00092005	467.7639613589702	21.424	0.11192	21.424	21.35	21.462	0					5	3	2	0	0	0	0.7126	1	6157	6157		31.955	4.9075	1	141890			8158	1140	4617	4644	8317	8317					0.04503142568705698
EAKGTVAL	8	Unmodified	_EAKGTVAL_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.7289733886719	2	394.729261	787.443968	0.20601	8.1317E-05	-0.55825	-0.00022036	-0.35224	-0.00013904	394.7290327575328	23.769	0.14339	23.769	23.685	23.828	0					6	3	2	0	0	0	0.32597	1	7319	7319		79.713	5.4575	1	152850			8159	7754	4618	4645	8318	8318					0.04174424460370574
EAKGTVAL	8	Unmodified	_EAKGTVAL_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.729248046875	2	394.729261	787.443968	-0.65373	-0.00025805	0.54014	0.00021321	-0.11358	-4.4835E-05	394.7294538183986	23.938	0.31802	23.938	23.829	24.147	0					17	6	4	0	0	0	0.41	1	8199	8199		69.628	0	1	1838400			8160	7754	4618	4645	8319	8319					0.04174424460370574
EAKGTVSWK	9	Unmodified	_EAKGTVSWK_					0	0	0			REV__nc|ENSG00000089225|Q99593-2|TBX5	REV__nc|ENSG00000089225|Q99593-2|TBX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2718811035156	2	503.271824	1004.5291	0.57836	0.00029107	-0.61015	-0.00030707	-0.031794	-1.6001E-05	503.2714695804884	29.811	0.29239	29.811	29.714	30.007	0					26	12	3	0	0	0	0.46194	1	9422	9422		36.447	1.2947	1	310770	+		8161	13408	4619	4646	8320	8320					0.02701169926183411
EAKGTVSWK	9	Unmodified	_EAKGTVSWK_					0	0	0			REV__nc|ENSG00000089225|Q99593-2|TBX5	REV__nc|ENSG00000089225|Q99593-2|TBX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.271728515625	2	503.271824	1004.5291	0.7421	0.00037348	-1.017	-0.00051182	-0.27489	-0.00013835	503.2713722788821	30.09	0.36523	30.09	29.972	30.337	0					30	9	4	0	0	0	0.037924	1	10805	10805		101.25	10.883	1	3005000	+		8162	13408	4619	4646	8321	8321					0.02701169926183411
EAKGTVSWK	9	Unmodified	_EAKGTVSWK_					0	0	0			REV__nc|ENSG00000089225|Q99593-2|TBX5	REV__nc|ENSG00000089225|Q99593-2|TBX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2713928222656	2	503.271824	1004.5291	0.12896	6.49E-05	-0.58679	-0.00029531	-0.45783	-0.00023041	503.27147525576385	29.86	0.3122	29.86	29.765	30.077	0					20	8	3	0	0	0	0.032052	1	10083	10083		107.01	0.32444	1	447320	+		8163	13408	4619	4646	8322	8322					0.02701169926183411
EAKGTVSWK	9	Unmodified	_EAKGTVSWK_					0	0	0			REV__nc|ENSG00000089225|Q99593-2|TBX5	REV__nc|ENSG00000089225|Q99593-2|TBX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.271728515625	2	503.271824	1004.5291	1.1759	0.00059178	-1.6824	-0.00084672	-0.50656	-0.00025494	503.2707667184212	30.053	0.79889	30.053	29.83	30.629	0					33	16	4	0	0	0	0.037924	1	11059	11059		101.25	5.4375	1	3066700	+		8164	13408	4619	4646	8323	8323					0.02701169926183411
EAKIEVGSIL	10	Unmodified	_EAKIEVGSIL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.5412292480469	3	353.541252	1057.60193	0.49201	0.00017395	-0.56391	-0.00019937	-0.071898	-2.5419E-05	353.5410784749143	27.123	0.25609	27.123	27.037	27.293	0					14	6	3	0	0	0	0.73511	1	9428	9428		16.007	1.1419	1	5336200	+		8165	13022	4620	4647	8324	8324					0.07542878928961727
EAKIRSLF	8	Unmodified	_EAKIRSLF_					0	0	0		TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;ENST00000464622.5_1_6:121513684-121545514:-|nuORF	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2845764160156	2	482.284734	962.554916	0.56246	0.00027127	-1.2839	-0.0006192	-0.72142	-0.00034793	482.28418132272935	34.417	0.36792	34.417	34.334	34.702	0					11	9	2	0	0	0	0.51384	1	12834	12834		58.782	12.81	1	173510			8166	4726	4621	4648	8325	8325					0.07214064168465484
EAKIRSLF	8	Unmodified	_EAKIRSLF_					0	0	0		TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;ENST00000464622.5_1_6:121513684-121545514:-|nuORF	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2847595214844	2	482.284734	962.554916	-0.61522	-0.00029671	0.42251	0.00020377	-0.19271	-9.2939E-05	482.28494368602225	34.353	0.31005	34.353	34.245	34.555	0					10	6	2	0	0	0	0.46905	1	13171	13171		63.306	1.1989	1	464220			8167	4726	4621	4648	8326	8326					0.07214064168465484
EAKKTGNVKN	10	Unmodified	_EAKKTGNVKN_					0	0	0		ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.8082275390625	2	544.806562	1087.59857	0.49562	0.00027002	3.2201	0.0017543	3.7158	0.0020244	544.8083001287806	22.064	0.22739	22.064	21.978	22.206	0					11	7	2	0	0	0	0.44971	1	6435	6435		31.634	0	1	142330			8168	1537	4622	4649	8327	8327					0.058276288749766536
EAKKTGNVKN	10	Unmodified	_EAKKTGNVKN_					0	0	0		ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.808837890625	2	544.806562	1087.59857	3.6992	0.0020154	0.16209	8.8309E-05	3.8613	0.0021037	544.8066673367903	22.215	0.56593	22.215	22.156	22.722	0					17	11	2	0	0	0	0.4947	1	7368	7368		33.922	33.922	1	1786600			8169	1537	4622	4649	8328	8328					0.058276288749766536
EAKLILKR	8	Unmodified	_EAKLILKR_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.21820068359375	3	324.218443	969.633501	0.2886	9.3568E-05	-0.51845	-0.00016809	-0.22986	-7.4524E-05	324.2182250976787	22.796	0.34573	22.796	22.713	23.058	0					18	11	3	0	0	0	0.58597	1	6486	6486		52.937	0	1	289010	+		8170	17543	4623	4650	8329	8329					0.14746916473552574
EAKNPDEGEK	10	Unmodified	_EAKNPDEGEK_					0	0	0			REV__ENSG00000173545|ENST00000308683|ZNF622	REV__ENSG00000173545|ENST00000308683|ZNF622	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7647094726562	2	558.762017	1115.50948	3.4693	0.0019385	1.3792	0.00077064	4.8485	0.0027092	558.7628526488589	18.97	0.16756	18.97	18.863	19.031	0					9	3	4	0	0	0	0.46989	1	5793	5793		48.602	9.3487	1	636360	+		8171	16514	4624	4651	8330	8330					-0.043652508752529684
EAKPQEAA	8	Unmodified	_EAKPQEAA_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2138977050781	2	422.213975	842.413397	1.0064	0.00042491	-0.7255	-0.00030632	0.28089	0.0001186	422.2135511186849	14.781	0.18122	14.781	14.693	14.875	0					7	4	2	0	0	0	0.66989	1	3669	3669		37.812	1.3648	1	159430			8172	8116	4625	4652	8331	8331					-0.014113539246750406
EAKQYAPAL	9	Unmodified	_EAKQYAPAL_					0	0	0		ENST00000263253.8_1_22:41575130-41575280:+|nuORF	ENST00000263253.8_1_22:41575130-41575280:+|nuORF	ENST00000263253.8_1_22:41575130-41575280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7664794921875	2	495.766374	989.518196	-0.062515	-3.0993E-05	-0.12314	-6.1049E-05	-0.18566	-9.2042E-05	495.76613001294726	27.56	0.39839	27.56	27.244	27.642	0					20	14	2	0	0	0	0.45358	1	8443	8443		37.159	2.0071	1	81889			8173	8317	4626	4653	8332	8332					0.023017675518872238
EAKRKLEAL	9	Unmodified	_EAKRKLEAL_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3221435546875	2	529.321848	1056.62914	1.6305	0.00086308	-0.27087	-0.00014338	1.3597	0.0007197	529.3219486018496	26.289	1.272	26.289	25.983	27.255	0					46	25	4	0	0	0	0.19605	1	9283	9283		62.107	1.9892	1	659650	+		8174	15239	4627	4654	8333	8333					0.10309407260001535
EAKRLEEL	8	Unmodified	_EAKRLEEL_					0	0	0		CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant;CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant;CEP295|p.T553Lfs*15|1|0.55|ENSG00000166004|chr11:93695613-93695613|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2774963378906	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.132	1	25.132	24.632	25.632	0								0	0	0	1.7419	1	7945	7945		42.396	3.1433	1				8175	485	4628	4655	8334	8334					0.04585152580614249
EAKRNGTTV	9	Unmodified	_EAKRNGTTV_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.264404296875	2	488.26453	974.514508	-1.248	-0.00060933	1.1383	0.0005558	-0.10963	-5.3531E-05	488.2651460261608	13.648	0.07644	13.648	13.602	13.679	0					7	4	2	0	0	0	0.4966	1	2838	2838		32.812	2.3088	1	104080	+		8176	14421	4629	4656	8335	8335					0.02623097778052852
EAKSAVLP	8	Unmodified	_EAKSAVLP_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.7370300292969	2	407.737086	813.459619	0.62675	0.00025555	-0.75286	-0.00030697	-0.12611	-5.1419E-05	407.736756765964	29.024	0.25648	29.024	28.88	29.136	0					16	9	2	0	0	0	0.5676	1	9101	9101		53.351	3.3269	1	101000			8177	5669	4630	4657	8336	8336					0.04542710977432307
EAKSDKGQPK	10	Unmodified	_EAKSDKGQPK_					0	0	0			REV__nc|ENSG00000182397|Q6ZS02|DNM1P46	REV__nc|ENSG00000182397|Q6ZS02|DNM1P46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2915649414062	2	544.290745	1086.56694	1.1726	0.00063821	-0.68015	-0.0003702	0.49241	0.00026802	544.290433168769	19.092	0.17264	19.092	18.993	19.166	0					11	5	3	0	0	0	0.48965	1	4867	4867		46.457	3.5925	1	53111	+		8178	18453	4631	4658	8337	8337					0.027116361209891693
EAKSFEKL	8	Unmodified	_EAKSFEKL_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7643127441406	2	476.260925	950.507297	0.78326	0.00037304	-0.0513	-2.4432E-05	0.73196	0.0003486	476.26043454331926	28.783	0.61566	28.783	28.591	29.207	0					25	12	4	0	0	0	0.64144	1	10444	10444		42.396	1.618	1	1167600	+		8179	15712	4632	4659	8338	8338					0.030063651776117695
EAKSLLSAVAG	11	Unmodified	_EAKSLLSAVAG_					0	0	0			REV__nc|ENSG00000171604|Q7LFL8-2|CXXC5	REV__nc|ENSG00000171604|Q7LFL8-2|CXXC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2979736328125	2	523.298039	1044.58152	-1.2861	-0.00067303	1.9498	0.0010203	0.66368	0.0003473	523.2990382173653	30.056	0.18871	30.056	29.956	30.145	0					9	4	3	0	0	0	0.27742	1	10197	10197		65.157	10.435	1	161690	+		8180	16423	4633	4660	8339	8339					0.06101708269147821
EAKSTMICMNG	11	Carbamidomethyl (C)	_EAKSTMIC(Carbamidomethyl (C))MNG_	EAKSTMIC(1)MNG		EAKSTMIC(67)MNG		0	1	0		ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	621.2699584960938	2	621.269783	1240.52501	0.17855	0.00011093	-1.273	-0.00079088	-1.0945	-0.00067995	621.2694496999644	20.988	0.23034	20.988	20.868	21.098	0					18	6	4	0	0	0	0.26131	1	5694	5694		66.962	33.04	1	856750			8181	8940	4634	4661	8340	8340	379				-0.0856274694572221
EAKSTMICMNG	11	Carbamidomethyl (C)	_EAKSTMIC(Carbamidomethyl (C))MNG_	EAKSTMIC(1)MNG		EAKSTMIC(76)MNG		0	1	0		ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	621.2695922851562	2	621.269783	1240.52501	0.26442	0.00016428	-0.56471	-0.00035084	-0.30029	-0.00018656	621.2700221188272	21.306	0.26922	21.306	21.163	21.433	0					26	6	5	0	0	0	0.18431	1	6737	6737		76.17	12.636	1	4785600			8182	8940	4634	4661	8341	8341	379				-0.0856274694572221
EAKSTMICMNG	11	Carbamidomethyl (C)	_EAKSTMIC(Carbamidomethyl (C))MNG_	EAKSTMIC(1)MNG		EAKSTMIC(91)MNG		0	1	0		ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	621.2694091796875	2	621.269783	1240.52501	0.68391	0.00042489	-1.0131	-0.0006294	-0.32917	-0.00020451	621.269077964765	20.995	0.24349	20.995	20.881	21.124	0					12	7	2	0	0	0	0.093595	1	5945	5945		91.265	38.329	1	512970			8183	8940	4634	4661	8342	8342	379				-0.0856274694572221
EAKSTMICMNG	11	Carbamidomethyl (C)	_EAKSTMIC(Carbamidomethyl (C))MNG_	EAKSTMIC(1)MNG		EAKSTMIC(96)MNG		0	1	0		ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	ENST00000369393.7_1_6:90513083-90513194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	621.2698974609375	2	621.269783	1240.52501	0.14508	9.0132E-05	-1.1077	-0.00068819	-0.96264	-0.00059806	621.2695518087834	21.199	0.31245	21.199	21.045	21.357	0					20	6	5	0	0	0	0.074075	1	6982	6982		96.034	23.154	1	4048800			8184	8940	4634	4661	8343	8343	379				-0.0856274694572221
EAKSTVLQL	9	Unmodified	_EAKSTVLQL_					0	0	0			REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7869873046875	2	494.787307	987.560061	2.8171	0.0013939	-3.1766	-0.0015717	-0.35945	-0.00017785	494.7853729023742	38.965	0.43377	38.965	38.81	39.243	0					18	9	3	0	0	0	0.035062	1	15350	15350		104.06	1.2834	1	440220	+		8185	17370	4635	4662	8344	8344					0.06578323240421469
EAKSVKVKI	9	Unmodified	_EAKSVKVKI_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5500183105469	3	334.54997	1000.62808	-0.010855	-3.6316E-06	0.27767	9.2895E-05	0.26682	8.9263E-05	334.55000625610893	23.243	0.21899	23.243	23.133	23.352	0					8	4	2	0	0	0	0.61124	1	7865	7865		11.636	0	1	335900			8186	1639	4636	4663	8345	8345					0.1277919289109377
EAKVAQVL	8	Unmodified	_EAKVAQVL_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2583312988281	2	429.258185	856.501818	-0.5181	-0.0002224	0.39476	0.00016946	-0.12334	-5.2945E-05	429.25829831841236	27.279	0.26936	27.279	27.169	27.439	0					10	5	3	0	0	0	0.28427	1	9850	9850		87.754	5.4493	1	494690	+		8187	16227	4637	4664	8346	8346					0.06782686385793113
EALAANHQQL	10	Unmodified	_EALAANHQQL_					0	0	0		ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.7833862304688	2	547.783087	1093.55162	0.46603	0.00025528	0.14202	7.7794E-05	0.60804	0.00033308	547.7828952286173	27.038	0.13	27.038	26.956	27.086	0					5	3	2	0	0	0	0.19797	1	9411	9411		79.713	15.505	1	177120			8188	4305	4638	4665	8347	8347					0.008587693238041538
EALAKAEL	8	Unmodified	_EALAKAEL_					0	0	0			REV__nc|ENSG00000105856|O60381-3|HBP1	REV__nc|ENSG00000105856|O60381-3|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7421569824219	2	422.742368	843.470183	-0.21484	-9.0822E-05	-0.3274	-0.0001384	-0.54224	-0.00022923	422.74221454534813	27.924	0.25646	27.924	27.815	28.071	0					14	5	4	0	0	0	0.22872	1	10181	10181		124.08	10.669	1	812790	+		8189	13801	4639	4666	8348	8348					0.04218693631844417
EALEAVKNA	9	Unmodified	_EALEAVKNA_					0	0	0		nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant	nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.755859375	2	472.756007	943.497461	-0.52099	-0.0002463	-3.3124	-0.001566	-3.8334	-0.0018123	472.7560034141911	24.962	0.19539	24.962	24.86	25.055	0					8	4	3	0	0	0	0.17854	1	7894	7894		64.207	2.0999	1	110740			8190	1383	4640	4667	8349	8349					0.023451771722307058
EALEHLRHRV	10	Unmodified	_EALEHLRHRV_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.5702209472656	3	420.570427	1258.68945	0.42912	0.00018047	-1.0433	-0.00043877	-0.61414	-0.00025829	420.56999908909484	16.271	0.083752	16.271	16.216	16.3	0					7	4	2	0	0	0	0.7005	1	3679	3679		33.922	15.391	1	55779			8191	5251	4641	4668	8350	8350					0.07045517643086896
EALEVRQL	8	Unmodified	_EALEVRQL_					0	0	0			REV__ENST00000466727.1_1_10:64134143-64159545:+|nuORF	REV__ENST00000466727.1_1_10:64134143-64159545:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2716064453125	2	479.271824	956.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.944	1	29.944	29.444	30.444	0								0	0	0	1.7419	1	9790	9790		66.429	2.222	1		+		8192	14967	4642	4669	8351	8351					0.04909169926202139
EALFELEKN	9	Unmodified	_EALFELEKN_					0	0	0		ENST00000397412.7_1_16:1724055-1724097:+|nuORF	ENST00000397412.7_1_16:1724055-1724097:+|nuORF	ENST00000397412.7_1_16:1724055-1724097:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7821655273438	2	546.782222	1091.54989	0.46679	0.00025523	-0.08477	-4.6351E-05	0.38202	0.00020888	546.7821607036777	30.81	0.35202	30.81	30.713	31.065	0					17	12	2	0	0	0	0.0792	1	10144	10144		84.916	19.45	1	572530			8193	9219	4643	4670	8352	8352					0.007777155151870829
EALGILQSFT	10	Unmodified	_EALGILQSFT_					0	0	0		SATB2|p.I633T|1|0.04|ENSG00000119042|chr2:199272515-199272515|A/G|missense_variant	SATB2|p.I633T|1|0.04|ENSG00000119042|chr2:199272515-199272515|A/G|missense_variant	SATB2|p.I633T|1|0.04|ENSG00000119042|chr2:199272515-199272515|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.1971130371094	3	360.197485	1077.57063	-2.0398	-0.00073474	0.11709	4.2177E-05	-1.9227	-0.00069256	360.19753465409894	16.513	0.12442	16.513	16.43	16.555	0					5	3	2	0	0	0	0.65213	1	3923	3923		32.751	8.5478	1	111930			8194	22374	4644	4671	8353	8353					0.03494305894855643
EALHNSLQAEP	11	Unmodified	_EALHNSLQAEP_					0	0	0			REV__CLIC6|p.N583Tfs*15|1|0.16|ENSG00000159212|chr21:34708778-34708778|A/-|frameshift_variant	REV__CLIC6|p.N583Tfs*15|1|0.16|ENSG00000159212|chr21:34708778-34708778|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.7990112304688	2	604.798934	1207.58332	-0.44227	-0.00026749	0.11582	7.0046E-05	-0.32646	-0.00019744	604.7989475654363	31.25	0.25625	31.25	31.157	31.413	0					14	6	3	0	0	0	0.60833	1	11346	11346		36.318	2.396	1	413840	+		8195	12511	4645	4672	8354	8354					-0.012172827129006691
EALHSAEVAI	10	Unmodified	_EALHSAEVAI_					0	0	0			REV__ENSG00000010932|ENST00000617670|FMO1	REV__ENSG00000010932|ENST00000617670|FMO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2772216796875	2	520.274564	1038.53457	1.6231	0.00084446	3.4323	0.0017857	5.0554	0.0026302	520.2764307014181	41.598	0.27892	41.598	41.477	41.756	0					13	7	2	0	0	0	0.22198	1	16567	16567		76.774	7.1465	1	139160	+		8196	12901	4646	4673	8355	8355					0.016848487179913718
EALHTVSLV	9	Unmodified	_EALHTVSLV_					0	0	0			REV__ENSG00000180919|ENST00000316529|OR56B4	REV__ENSG00000180919|ENST00000316529|OR56B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7738952636719	2	484.7742	967.533846	-0.22313	-0.00010817	-0.06857	-3.3241E-05	-0.2917	-0.00014141	484.7741287908194	38.555	0.72947	38.555	38.382	39.111	0					73	27	5	0	0	0	0.26904	1	14762	14762		53.351	2.1588	1	12422000	+		8197	16827	4647	4674	8356	8356					0.04878054068956317
EALIDLPH	8	Unmodified	_EALIDLPH_					0	0	0			REV__TSPEAR|p.R30H|1|0.33|ENSG00000175894|chr21:44567999-44567999|C/T|missense_variant	REV__TSPEAR|p.R30H|1|0.33|ENSG00000175894|chr21:44567999-44567999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2496032714844	2	454.247818	906.481082	4.0083	0.0018208	0.50229	0.00022816	4.5106	0.0020489	454.2478840351079	32.321	0.12021	32.321	32.258	32.379	0					6	5	2	0	0	0	0.68754	1	10775	10775		35.201	1.0282	1	31934	+		8198	22243	4648	4675	8357	8357					0.024100960061332444
EALIGNIEVL	10	Unmodified	_EALIGNIEVL_					0	0	0			REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24	REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.8092651367188	2	535.808239	1069.60193	-0.54741	-0.00029331	0.55958	0.00029983	0.012166	6.5188E-06	535.808949814837	24.97	0.13269	24.97	24.904	25.037	0					6	4	2	0	0	0	0.50287	1	7716	7716		32.812	7.2384	1	81254	+		8199	14081	4649	4676	8358	8358					0.06990878928968414
EALILHLL	8	Unmodified	_EALILHLL_					0	0	0			REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.29205322265625	2	461.292028	920.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.693	1	33.693	33.193	34.193	0								0	0	0	1.7419	1	11324	11324		37.028	1.8278	1		+		8200	18844	4650	4677	8359	8359					0.10604136316624135
EALKLRNVA	9	Unmodified	_EALKLRNVA_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.5419616699219	3	338.541586	1012.60293	0.5314	0.0001799	0.6252	0.00021166	1.1566	0.00039156	338.54188944791326	20.823	0.51851	20.823	20.445	20.964	0					19	8	4	0	0	0	0.44593	1	6784	6784		37.812	3.639	1	461420	+		8201	13299	4651	4678	8360	8360					0.0971313808852301
EALKSHIM	8	Unmodified	_EALKSHIM_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000508451.1_1_5:10250422-10254994:+|nuORF;ENST00000510326.5_1_5:10250452-10254343:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.74969482421875	2	464.74967	927.484787	0.0846	3.9318E-05	-0.54764	-0.00025451	-0.46304	-0.0002152	464.74940590779875	23.301	0.15621	23.301	23.26	23.416	0					7	4	2	0	0	0	0.30437	1	6750	6750		82.305	2.3658	1	171100			8202	4933	4652	4679	8361	8361					0.018144425083619353
EALKSHIM	8	Unmodified	_EALKSHIM_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000508451.1_1_5:10250422-10254994:+|nuORF;ENST00000510326.5_1_5:10250452-10254343:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.74945068359375	2	464.74967	927.484787	-0.1393	-6.4739E-05	-0.76213	-0.0003542	-0.90142	-0.00041894	464.7495565459388	23.57	0.21536	23.57	23.513	23.728	0					10	4	4	0	0	0	0.30437	1	8150	8150		82.305	8.3303	1	299940			8203	4933	4652	4679	8362	8362					0.018144425083619353
EALLTTFGAP	10	Unmodified	_EALLTTFGAP_					0	0	0			REV__ENST00000555122.1_1_14:105421221-105423995:-|nuORF	REV__ENST00000555122.1_1_14:105421221-105423995:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.27239990234375	2	510.274032	1018.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.744	1	14.744	14.244	15.244	0								0	0	0	0.37816	1	3184	3184		37.159	1.5408	1		+		8204	20239	4653	4680	8363	8363					0.024986343491036678
EALNKEYLSIK	11	Unmodified	_EALNKEYLSIK_					0	0	0		tr|U7SIN4|U7SIN4_FUSNUThiazolebiosynthesisproteinThiHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02117PE=4SV=1	tr|U7SIN4|U7SIN4_FUSNUThiazolebiosynthesisproteinThiHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02117PE=4SV=1	tr|U7SIN4|U7SIN4_FUSNUThiazolebiosynthesisproteinThiHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02117PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.5780944824219	3	436.578365	1306.71327	0.76403	0.00033356	-1.4327	-0.00062549	-0.66868	-0.00029193	436.57768940713896	26.919	0.26064	26.919	26.811	27.072	0					13	5	3	0	0	0	0.60545	1	9707	9707		36.528	1.0323	1	557800			8205	22600	4654	4681	8364	8364					0.07217893566212297
EALPMDREV	9	Unmodified	_EALPMDREV_					0	0	0		SYK|p.T345R|1|0.3|ENSG00000165025|chr9:90874702-90874702|C/G|missense_variant	SYK|p.T345R|1|0.3|ENSG00000165025|chr9:90874702-90874702|C/G|missense_variant	SYK|p.T345R|1|0.3|ENSG00000165025|chr9:90874702-90874702|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.26171875	2	530.260599	1058.50665	1.73	0.00091734	0.0069268	3.673E-06	1.7369	0.00092101	530.2605528110502	39.94	1.7595	39.94	39.05	40.809	0					190	65	4	0	0	0	0.47473	1	15709	15709		35.152	3.6222	1	1022300			8206	22504	4655	4682	8365	8365					-0.020267975337446842
EALPREDAD	9	Unmodified	_EALPREDAD_					0	0	0		nc|ENSG00000136720|O60243-2|HS6ST1;ENSG00000136720|ENST00000259241|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8182067871094	2	508.238178	1014.4618	-1.892	-0.00096159	1.4883	0.00075641	-0.40372	-0.00020519	508.2389095992323	23.292	0.32621	23.292	23.188	23.514	0					22	7	5	0	0	0	0.17854	1	7053	7053		64.207	0	1	2726800			8207	4102	4656	4683	8366	8366					-0.04484905075435108
EALREIKKQA	10	Unmodified	_EALREIKKQA_					0	0	0			REV__nc|ENSG00000174740|Q96DU9-2|PABPC5	REV__nc|ENSG00000174740|Q96DU9-2|PABPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.353515625	2	593.351137	1184.68772	3.1744	0.0018835	0.82436	0.00048914	3.9988	0.0023727	593.3515448124105	31.345	0.26373	31.345	31.241	31.505	0					15	5	4	0	0	0	0.25899	1	11721	11721		35.152	0	1	750950	+		8208	16580	4657	4684	8367	8367					0.1027646383447518
EALRGQPR	8	Unmodified	_EALRGQPR_					0	0	0		ENST00000482513.5_1_2:61293116-61296033:+|nuORF	ENST00000482513.5_1_2:61293116-61296033:+|nuORF	ENST00000482513.5_1_2:61293116-61296033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.76177978515625	2	463.761958	925.509363	0.097261	4.5106E-05	0.11903	5.5202E-05	0.21629	0.00010031	463.7620230658891	13.809	0.28549	13.809	13.664	13.949	0					25	13	3	0	0	0	0.34985	1	2734	2734		76.847	5.5509	1	217850			8209	9968	4658	4685	8368	8368					0.043628387060948626
EALRQSVVPA	10	Unmodified	_EALRQSVVPA_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.20458984375	3	357.204862	1068.59276	-0.89204	-0.00031864	1.0089	0.00036038	0.11684	4.1737E-05	357.2051754476237	21.516	0.44	21.516	21.316	21.756	0					18	13	2	0	0	0	0.71484	1	6158	6158		19.263	0	1	71056			8210	1824	4659	4686	8369	8369					0.06120530363295984
EALSLAHTY	9	Unmodified	_EALSLAHTY_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7563781738281	2	502.756007	1003.49746	0.53883	0.0002709	0.46584	0.0002342	1.0047	0.0005051	502.75620419164716	34.365	0.20853	34.365	34.265	34.474	0					21	10	3	0	0	0	0.14603	1	11221	11221		68.787	12.066	1	315440			8211	4986	4660	4687	8370	8370					-0.004148228277699673
EALSLAHTY	9	Unmodified	_EALSLAHTY_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.75592041015625	2	502.756007	1003.49746	-0.2178	-0.0001095	0.89104	0.00044798	0.67324	0.00033848	502.7565227861689	34.374	0.18665	34.374	34.293	34.48	0					10	6	2	0	0	0	0.20551	1	12162	12162		60.972	4.2509	1	116190			8212	4986	4660	4687	8371	8371					-0.004148228277699673
EALSLAHTY	9	Unmodified	_EALSLAHTY_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7556457519531	2	502.756007	1003.49746	0.1338	6.7267E-05	0.15978	8.033E-05	0.29358	0.0001476	502.7558524505494	34.379	0.26069	34.379	34.281	34.542	0					18	8	3	0	0	0	0.26904	1	12171	12171		53.351	7.3995	1	254410			8213	4986	4660	4687	8372	8372					-0.004148228277699673
EALSLAHTY	9	Unmodified	_EALSLAHTY_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7560119628906	2	502.756007	1003.49746	-0.48505	-0.00024386	0.59523	0.00029926	0.11018	5.5393E-05	502.75627204711253	34.547	0.75311	34.547	34.443	35.196	0					27	15	4	0	0	0	0.0015262	1	13261	13261		177.71	100.86	1	1279400			8214	4986	4660	4687	8373	8373					-0.004148228277699673
EALSPHDVK	9	Unmodified	_EALSPHDVK_					0	0	0		MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant	MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant	MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2610168457031	2	498.261456	994.50836	-1.1056	-0.00055088	1.1823	0.00058911	0.076735	3.8234E-05	498.261977849958	32.729	0.20028	32.729	32.657	32.857	0					9	7	2	0	0	0	0.42902	1	10939	10939		39.253	2.0937	1	100930			8215	11351	4661	4688	8374	8374					0.010885795465242154
EALSQALKL	9	Unmodified	_EALSQALKL_					0	0	0		ENST00000555903.1_1_14:90745249-90755225:-|nuORF;ENSG00000119720|ENST00000354366|NRDE2	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.78924560546875	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.478	1	30.478	29.978	30.978	0								0	0	0	0.23445	1	10993	10993		45.972	4.5456	1				8216	3134	4662	4689	8375	8375					0.07822627103041668
EALVKTLQK	9	Unmodified	_EALVKTLQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.31884765625	2	515.318774	1028.623	-0.50026	-0.00025779	0.71884	0.00037043	0.21858	0.00011264	515.3191576248421	30.342	0.15156	30.342	30.249	30.4	0					8	3	3	0	0	0	0.10506	1	11340	11340		78.264	3.2205	1	300710			8217	11514	4663	4690	8376	8376					0.1098288902846889
EALVWHLQ	8	Unmodified	_EALVWHLQ_					0	0	0			REV__ENST00000452399.1_1:148932830-148951295:+|nuORF	REV__ENST00000452399.1_1:148932830-148951295:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.5152893066406	3	332.515148	994.523616	1.6432	0.0005464	-1.3286	-0.00044179	0.31458	0.0001046	332.51472895112903	33.051	0.24524	33.051	33.004	33.249	0					9	5	2	0	0	0	0.64096	1	12533	12533		63.306	27.688	1	462570	+		8218	19314	4664	4691	8377	8377					0.026134911343774547
EAMEWVIHK	9	Unmodified	_EAMEWVIHK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.7871704101562	2	571.786784	1141.55902	2.0113	0.00115	-1.7344	-0.00099168	0.27694	0.00015835	571.7858084607195	34.743	0.35493	34.743	34.615	34.97	0					17	10	2	0	0	0	0.034359	1	13435	13435		104.75	43.775	1	367860			8219	2096	4665	4692	8378	8378					-0.006102144001260967
EAMLQEKIK	9	Unmodified	_EAMLQEKIK_					0	0	0			REV__ZNF362|p.P171Lfs*39|1|0.4|ENSG00000160094|chr1:33280281-33280281|C/-|frameshift_variant	REV__ZNF362|p.P171Lfs*39|1|0.4|ENSG00000160094|chr1:33280281-33280281|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3008422851562	2	545.302267	1088.58998	0.39718	0.00021658	-1.9303	-0.0010526	-1.5331	-0.00083603	545.3005407791883	33.534	0.37032	33.534	33.327	33.698	0					23	9	3	0	0	0	0.1424	1	12395	12395		69.628	7.5202	1	814790	+		8220	15734	4666	4693	8379	8379					0.04922938914091901
EAMQAAVQY	9	Unmodified	_EAMQAAVQY_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7339172363281	2	505.734217	1009.45388	0.12766	6.4561E-05	0.60405	0.00030549	0.73171	0.00037005	505.7345464600379	35.484	0.125	35.484	35.393	35.518	0					5	3	2	0	0	0	0.078509	1	13757	13757		85.161	13.283	1	51280			8221	854	4667	4694	8380	8380					-0.0504675559656107
EAMRIGAEVY	10	Unmodified	_EAMRIGAEVY_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;ENO3|p.V367*|1|0.39|ENSG00000108515|chr17:4956599-4956599|G/-|frameshift_variant;nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.7816162109375	2	569.781699	1137.54884	0.10281	5.8582E-05	0.59992	0.00034182	0.70273	0.0004004	569.7819865791405	36.761	0.23811	36.761	36.655	36.893	0					21	13	2	0	0	0	0.097781	1	12434	12434		95.815	40.311	1	199900			8222	1530	4668	4695	8381	8381					-0.014428221253638185
EAMRIGAEVY	10	Unmodified	_EAMRIGAEVY_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;ENO3|p.V367*|1|0.39|ENSG00000108515|chr17:4956599-4956599|G/-|frameshift_variant;nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7822265625	2	569.781699	1137.54884	0.62946	0.00035866	-0.085953	-4.8974E-05	0.54351	0.00030968	569.7818249731085	36.74	0.27094	36.74	36.659	36.93	0					21	12	3	0	0	0	0.033694	1	13147	13147		115.49	38.176	1	127320			8223	1530	4668	4695	8382	8382					-0.014428221253638185
EAMRIGAEVY	10	Unmodified	_EAMRIGAEVY_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;ENO3|p.V367*|1|0.39|ENSG00000108515|chr17:4956599-4956599|G/-|frameshift_variant;nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7816162109375	2	569.781699	1137.54884	1.6245	0.00092559	-1.047	-0.00059657	0.57745	0.00032902	569.7814251274553	36.871	0.95621	36.871	36.562	37.518	0					31	19	3	0	0	0	0.27065	1	14448	14448		70.816	2.0294	1	1529800			8224	1530	4668	4695	8383	8383					-0.014428221253638185
EAMTLFLE	8	Unmodified	_EAMTLFLE_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.238037109375	2	477.236061	952.45757	2.2379	0.001068	1.3761	0.00065672	3.614	0.0017247	477.23676011943087	17.955	0.25814	17.955	17.851	18.109	0					10	5	3	0	0	0	0.66372	1	5315	5315		38.806	3.1879	1	998870			8225	3384	4669	4696	8384	8384					-0.020560858226986056
EAMVACRQL	9	Unmodified	_EAMVACRQL_					0	0	0		nc|ENSG00000115318|P58215-2|LOXL3;nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3;ENSG00000138131|ENST00000260702|LOXL4	nc|ENSG00000115318|P58215-2|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7501220703125	2	510.751887	1019.48922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.109	1	40.109	39.609	40.609	0								0	0	0	0.1219	1	15799	15799		66.429	13.078	1				8226	2901	4670	4697	8385	8385					-0.019744163403856874
EAMVACRQL	9	Unmodified	_EAMVACRQL_					0	0	0		nc|ENSG00000115318|P58215-2|LOXL3;nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3;ENSG00000138131|ENST00000260702|LOXL4	nc|ENSG00000115318|P58215-2|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7843322753906	2	510.751887	1019.48922	1.2059	0.00061591	-1.1683	-0.0005967	0.037619	1.9214E-05	510.7513891094417	12.674	0.18152	12.674	12.588	12.77	0					7	4	2	0	0	0	0.47038	1	2904	2904		35.618	1.4457	1	60797			8227	2901	4670	4697	8386	8386					-0.019744163403856874
EAMVGHEM	8	Unmodified	_EAMVGHEM_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.1881408691406	2	452.188588	902.362623	-0.075511	-3.4145E-05	-0.70145	-0.00031719	-0.77696	-0.00035133	452.1882480850575	25.047	0.14355	25.047	24.999	25.142	0					5	3	2	0	0	0	0.59411	1	7918	7918		50.025	20.183	1	101130			8228	4639	4671	4698	8387	8387					-0.09246342565518262
EAMVGHEM	8	Unmodified	_EAMVGHEM_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.1883544921875	2	452.188588	902.362623	-2.614	-0.001182	2.7355	0.001237	0.12147	5.4929E-05	452.18969372832026	25.081	0.14178	25.081	24.986	25.128	0					5	3	2	0	0	0	0.59411	1	7911	7911		50.025	7.5501	1	87339			8229	4639	4671	4698	8388	8388					-0.09246342565518262
EANAIALKY	9	Unmodified	_EANAIALKY_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7740173339844	2	496.7742	991.533846	0.71801	0.00035669	-0.76794	-0.00038149	-0.049933	-2.4805E-05	496.7737417368665	34.655	0.2113	34.655	34.533	34.744	0					9	5	2	0	0	0	0.062676	1	12922	12922		90.777	2.1338	1	201830			8230	3323	4672	4699	8389	8389					0.037740540689469526
EANELQGRI	9	Unmodified	_EANELQGRI_					0	0	0			REV__ENSG00000011295|ENST00000261647|TTC19	REV__ENSG00000011295|ENST00000261647|TTC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2691040039062	2	515.269813	1028.52507	0.69811	0.00035971	-2.1985	-0.0011328	-1.5003	-0.00077308	515.2684197576776	30.868	0.35649	30.868	30.724	31.081	0					16	9	2	0	0	0	0.33044	1	10556	10556		47.657	4.7931	1	62641	+		8231	12904	4673	4700	8390	8390					0.011950804324669662
EANFFTSQMI	10	Unmodified	_EANFFTSQMI_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;ENST00000496353.1_1_1:1254237-1254918:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.2755126953125	2	594.273706	1186.53286	0.021748	1.2924E-05	2.5656	0.0015247	2.5874	0.0015376	594.2759701868414	30.171	0.187	30.171	30.076	30.263	0					7	4	2	0	0	0	0.3337	1	11241	11241		63.534	3.4156	1	138460			8232	3496	4674	4701	8391	8391					-0.052945283622648276
EANFFTSQMI	10	Unmodified	_EANFFTSQMI_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;ENST00000496353.1_1_1:1254237-1254918:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.2762451171875	2	594.273706	1186.53286	3.1723	0.0018852	-0.3133	-0.00018618	2.859	0.001699	594.2738737888553	30.121	0.36256	30.121	30.014	30.376	0					15	7	4	0	0	0	0.31613	1	11126	11126		65.465	0	1	567800			8233	3496	4674	4701	8392	8392					-0.052945283622648276
EANGTIRL	8	Unmodified	_EANGTIRL_					0	0	0			REV__PKP1|p.R340I|1|0.3|ENSG00000081277|chr1:201317744-201317744|G/T|missense_variant	REV__PKP1|p.R340I|1|0.3|ENSG00000081277|chr1:201317744-201317744|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.242919921875	2	437.243067	872.47158	-0.63453	-0.00027744	-0.24741	-0.00010818	-0.88194	-0.00038562	437.24301921176277	29.206	0.23879	29.206	29.112	29.351	0					10	6	2	0	0	0	0.37378	1	9792	9792		73.975	0	1	75560	+		8234	21381	4675	4702	8393	8393					0.03024327720618203
EANKAIIEY	9	Unmodified	_EANKAIIEY_					0	0	0		tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.779052734375	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.396	1	38.396	37.896	38.896	0								0	0	0	0.22075	1	13736	13736		49.442	1.7842	1				8235	22893	4676	4703	8394	8394					0.016537328607682866
EANLTDVQL	9	Unmodified	_EANLTDVQL_					0	0	0			REV__nc|ENSG00000133026|P35580|MYH10	REV__nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.75836181640625	2	501.758746	1001.50294	0.69233	0.00034739	-1.1346	-0.00056931	-0.4423	-0.00022193	501.75814549307233	30.791	0.3076	30.791	30.658	30.966	0					19	7	3	0	0	0	0.12834	1	11127	11127		72.879	0	1	1796100	+		8236	14690	4677	4704	8395	8395					0.002248559640406711
EANQHELLY	9	Unmodified	_EANQHELLY_					0	0	0		ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;MR1|p.P230Qfs*5|1|0.22|ENSG00000153029|chr1:181052314-181052314|C/-|frameshift_variant;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7694702148438	2	558.769645	1115.52474	1.2897	0.00072065	-0.38551	-0.00021541	0.90421	0.00050524	558.7694763628872	32.651	0.23228	32.651	32.55	32.782	0					16	9	2	0	0	0	0.25109	1	10557	10557		55.504	5.4797	1	152140			8237	5031	4678	4705	8396	8396					-0.028403392873769917
EANQHELLY	9	Unmodified	_EANQHELLY_					0	0	0		ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;MR1|p.P230Qfs*5|1|0.22|ENSG00000153029|chr1:181052314-181052314|C/-|frameshift_variant;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7702026367188	2	558.769645	1115.52474	0.52486	0.00029328	0.45162	0.00025235	0.97649	0.00054563	558.7698802358019	32.941	0.30446	32.941	32.814	33.119	0					23	8	4	0	0	0	0.05357	1	12125	12125		94.006	33.034	1	950750			8238	5031	4678	4705	8397	8397					-0.028403392873769917
EANQHELLY	9	Unmodified	_EANQHELLY_					0	0	0		ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;MR1|p.P230Qfs*5|1|0.22|ENSG00000153029|chr1:181052314-181052314|C/-|frameshift_variant;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.769775390625	2	558.769645	1115.52474	-0.46964	-0.00026242	1.6059	0.00089734	1.1363	0.00063492	558.7705430774367	32.717	0.11889	32.717	32.648	32.767	0					7	4	2	0	0	0	0.19605	1	10933	10933		62.107	6.6032	1	82154			8239	5031	4678	4705	8398	8398					-0.028403392873769917
EANQHELLY	9	Unmodified	_EANQHELLY_					0	0	0		ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;MR1|p.P230Qfs*5|1|0.22|ENSG00000153029|chr1:181052314-181052314|C/-|frameshift_variant;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.770751953125	2	558.769645	1115.52474	-0.12922	-7.2203E-05	0.68567	0.00038313	0.55645	0.00031093	558.7699123210682	32.909	0.32141	32.909	32.817	33.138	0					15	7	3	0	0	0	0.1115	1	12535	12535		76.774	10.971	1	365920			8240	5031	4678	4705	8399	8399					-0.028403392873769917
EAPAHISAM	9	Unmodified	_EAPAHISAM_					0	0	0		HS3ST3B1|p.R213H|1|0.44|ENSG00000125430|chr17:14345111-14345111|G/A|missense_variant;HS3ST3A1|p.R228H|1|0.24|ENSG00000153976|chr17:13496735-13496735|C/T|missense_variant	HS3ST3B1|p.R213H|1|0.44|ENSG00000125430|chr17:14345111-14345111|G/A|missense_variant	HS3ST3B1|p.R213H|1|0.44|ENSG00000125430|chr17:14345111-14345111|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7235107421875	2	463.723652	925.432752	-0.70131	-0.00032521	-0.29511	-0.00013685	-0.99642	-0.00046206	463.72359741271964	34.065	0.42489	34.065	33.947	34.372	0					24	11	3	0	0	0	0.16524	1	12630	12630		65.803	14.468	1	1702300			8241	11213	4679	4706	8400	8400					-0.03294720905410031
EAPAHISAM	9	Unmodified	_EAPAHISAM_					0	0	0		HS3ST3B1|p.R213H|1|0.44|ENSG00000125430|chr17:14345111-14345111|G/A|missense_variant;HS3ST3A1|p.R228H|1|0.24|ENSG00000153976|chr17:13496735-13496735|C/T|missense_variant	HS3ST3B1|p.R213H|1|0.44|ENSG00000125430|chr17:14345111-14345111|G/A|missense_variant	HS3ST3B1|p.R213H|1|0.44|ENSG00000125430|chr17:14345111-14345111|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.72344970703125	2	463.723652	925.432752	-0.7296	-0.00033833	-0.26579	-0.00012325	-0.99539	-0.00046158	463.72366599124	33.855	0.28626	33.855	33.75	34.036	0					24	11	3	0	0	0	0.51817	1	11373	11373		30.504	1.3541	1	201360			8242	11213	4679	4706	8401	8401					-0.03294720905410031
EAPAVLIPAQ	10	Unmodified	_EAPAVLIPAQ_					0	0	0		ENST00000570069.5_1_16:1827428-1828166:+|nuORF	ENST00000570069.5_1_16:1827428-1828166:+|nuORF	ENST00000570069.5_1_16:1827428-1828166:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7894287109375	2	504.78985	1007.56515	-0.8083	-0.00040802	1.33	0.00067138	0.52172	0.00026336	504.790600687422	35.289	0.18801	35.289	35.212	35.4	0					14	8	2	0	0	0	0.39566	1	11955	11955		56.721	1.9987	1	121820			8243	10791	4680	4707	8402	8402					0.061666271030503594
EAPDQLIPAG	10	Unmodified	_EAPDQLIPAG_					0	0	0			REV__ENST00000397527.5_2_20:34043234-34046179:+|nuORF	REV__ENST00000397527.5_2_20:34043234-34046179:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7612609863281	2	505.761289	1009.50803	-0.27513	-0.00013915	0.49349	0.00024959	0.21836	0.00011044	505.7616817970136	16.78	0.25664	16.78	16.65	16.907	0					9	5	3	0	0	0	0.39566	1	4719	4719		56.721	1.9447	1	193600	+		8244	18911	4681	4708	8403	8403					0.0036515982668561264
EAPKESLES	9	Unmodified	_EAPKESLES_					0	0	0			REV__nc|ENSG00000151725|Q71F23-3|CENPU	REV__nc|ENSG00000151725|Q71F23-3|CENPU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2408142089844	2	495.242929	988.471305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.898	1	14.898	14.398	15.398	0								0	0	0	0.22284	1	3965	3965		47.657	5.2612	1		+		8245	15487	4682	4709	8404	8404					-0.02339136789908025
EAPKLRSSRPP	11	Unmodified	_EAPKLRSSRPP_					0	0	0		ENST00000466855.1_1_7:150774601-150775027:-|nuORF;ENST00000467237.5_1_7:150774601-150776190:-|nuORF	ENST00000466855.1_1_7:150774601-150775027:-|nuORF	ENST00000466855.1_1_7:150774601-150775027:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2385559082031	3	413.238566	1236.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.825	1	45.825	45.325	46.325	0								0	0	0	0.45674	1	17017	17017		22.562	2.5311	1				8246	9791	4683	4710	8405	8405					0.08498982065998462
EAPLSLAEGWQ	11	Unmodified	_EAPLSLAEGWQ_					0	0	0		ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF;nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.8669738769531	3	400.868027	1199.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.976	1	14.976	14.476	15.476	0								0	0	0	0.38772	1	4002	4002		39.873	2.365	1				8247	7500	4684	4711	8406	8406					-0.009554970818271613
EAPNPIHLTV	10	Unmodified	_EAPNPIHLTV_					0	0	0		ENST00000530219.1_1_11:8014470-8016722:+|nuORF;ENSG00000175390|ENST00000651655|EIF3F	ENST00000530219.1_1_11:8014470-8016722:+|nuORF	ENST00000530219.1_1_11:8014470-8016722:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7994995117188	2	545.798206	1089.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.006	1	36.006	35.506	36.506	0								0	0	0	0.3598	1	12862	12862		41.427	0	1				8248	6554	4685	4712	8407	8407					0.04065127988974382
EAPSSRASL	9	Unmodified	_EAPSSRASL_					0	0	0		ENST00000258796.11_1_7:2701866-2702169:+|nuORF	ENST00000258796.11_1_7:2701866-2702169:+|nuORF	ENST00000258796.11_1_7:2701866-2702169:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2377014160156	2	459.237981	916.461409	-0.42156	-0.0001936	-0.82033	-0.00037673	-1.2419	-0.00057033	459.2377140710197	30.683	0.18525	30.683	30.586	30.771	0					13	8	2	0	0	0	0.2873	1	9791	9791		51.335	3.4199	1	102520			8249	8278	4686	4713	8408	8408					-0.00016280004626878508
EAPVMKPI	8	Unmodified	_EAPVMKPI_					0	0	0			REV__ENSG00000232125|ENST00000452335|DYTN	REV__ENSG00000232125|ENST00000452335|DYTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7489013671875	2	442.749139	883.483725	-0.50521	-0.00022368	0.20117	8.9067E-05	-0.30404	-0.00013462	442.749171989261	35.486	0.52483	35.486	35.179	35.704	0					25	10	3	0	0	0	0.41701	1	13645	13645		68.787	8.4929	1	364690	+		8250	17648	4687	4714	8409	8409					0.037322281394494894
EAQAVPATLPE	11	Unmodified	_EAQAVPATLPE_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.2939453125	2	563.292953	1124.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.067	1	15.067	14.567	15.567	0								0	0	0	0.38672	1	3891	3891		40.058	2.2467	1				8251	6707	4688	4715	8410	8410					0.014051005438886932
EAQGIFVNVL	10	Unmodified	_EAQGIFVNVL_					0	0	0			REV__ENST00000488002.5_1_3:179322588-179334847:+|nuORF	REV__ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3016357421875	2	545.300581	1088.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.817	1	43.817	43.317	44.317	0								0	0	0	0.33107	1	17550	17550		45.972	6.7194	1		+		8252	14865	4689	4716	8411	8411					0.0458601213174461
EAQGLKGAL	9	Unmodified	_EAQGLKGAL_					0	0	0			REV__ENST00000587250.3_1_17:41180731-41180929:+|nuORF	REV__ENST00000587250.3_1_17:41180731-41180929:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.75286865234375	2	443.753267	885.491981	0.23411	0.00010388	-0.68837	-0.00030547	-0.45427	-0.00020158	443.75289153382613	23.29	0.44427	23.29	23.221	23.665	0					25	14	2	0	0	0	0.33044	1	6732	6732		47.657	5.2612	1	129870	+		8253	20491	4690	4717	8412	8412					0.04465498380432109
EAQKKKQEA	9	Unmodified	_EAQKKKQEA_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;RBM26|p.N783Ifs*5|1|0.11|ENSG00000139746|chr13:79342743-79342743|T/-|frameshift_variant;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2938842773438	2	530.293288	1058.57202	0.11584	6.1429E-05	0.68842	0.00036506	0.80426	0.00042649	530.2936453871827	18.999	0.2109	18.999	18.913	19.124	0					10	5	3	0	0	0	0.12834	1	5644	5644		72.879	0	1	768900			8254	4351	4691	4718	8413	8413					0.04507939983614051
EAQKNKPSL	9	Unmodified	_EAQKNKPSL_					0	0	0		ENSG00000120341|ENST00000308284|SEC16B;SEC16B|p.Y799Tfs*17|1|0.42|ENSG00000120341|chr1:177937322-177937322|A/-|frameshift_variant;ENST00000464428.2_1_1:177930716-177937161:-|nuORF;ENST00000466953.6_1_1:177929778-177937161:-|nuORF;nc|ENSG00000120341|Q96JE7-2|SEC16B	ENSG00000120341|ENST00000308284|SEC16B	ENSG00000120341|ENST00000308284|SEC16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.78204345703125	2	507.782556	1013.55056	-0.60424	-0.00030682	0.1685	8.5563E-05	-0.43574	-0.00022126	507.7825358027071	33.286	0.25605	33.286	33.21	33.466	0					25	10	3	0	0	0	0.27249	1	11165	11165		52.937	5.2794	1	272140			8255	3169	4692	4719	8414	8414					0.04432554954905754
EAQKQRQH	8	Unmodified	_EAQKQRQH_					0	0	0			REV__nc|ENSG00000070159|P26045-3|PTPN3	REV__nc|ENSG00000070159|P26045-3|PTPN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.18914794921875	3	342.18094	1023.52099	1.5476	0.00052955	1.0545	0.00036082	2.602	0.00089037	342.18125955948597	18.215	0.65926	18.215	18.109	18.768	0					41	13	5	0	0	0	0.70055	1	5370	5370		35.618	8.9254	1	19054000	+		8256	13169	4693	4720	8415	8415					0.010170357294214227
EAQLDREGD	9	Unmodified	_EAQLDREGD_					0	0	0		TMEM128|p.E42Gfs*8|1|0.26|ENSG00000132406|chr4:4246318-4246319|-/T|frameshift_variant;ENST00000254742.6_1_4:4249740-4249929:-|nuORF;ENSG00000132406|ENST00000382753|TMEM128	TMEM128|p.E42Gfs*8|1|0.26|ENSG00000132406|chr4:4246318-4246319|-/T|frameshift_variant	TMEM128|p.E42Gfs*8|1|0.26|ENSG00000132406|chr4:4246318-4246319|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7319946289062	2	516.73326	1031.45197	0.041713	2.1555E-05	-0.17648	-9.1193E-05	-0.13477	-6.9638E-05	516.7320299038075	16.001	0.13815	16.001	15.926	16.064	0					9	3	4	0	0	0	0.27249	1	4264	4264		52.937	5.2794	1	760480			8257	3786	4694	4721	8416	8416					-0.06250093080802799
EAQLRQFTL	9	Unmodified	_EAQLRQFTL_					0	0	0		ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4	ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF	ENST00000438378.2_1_2:132275414-132277996:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.3040771484375	2	553.303655	1104.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.775	1	30.775	30.275	31.275	0								0	0	0	0.19616	1	11539	11539		36.447	12.244	1				8258	9547;4099	4695	4722	8417	8417					0.04464530363270569
EAQNTEAAR	9	Unmodified	_EAQNTEAAR_					0	0	0		ENST00000494080.5_1_11:64109984-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B;ENST00000492980.1_1_11:64111011-64117377:+|nuORF;nc|ENSG00000168071|A6NC98-3|CCDC88B;ENST00000494566.5_1_11:64110218-64117194:+|nuORF	ENST00000494080.5_1_11:64109984-64120281:+|nuORF	ENST00000494080.5_1_11:64109984-64120281:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2373962402344	2	495.23597	988.457387	0.082133	4.0675E-05	3.7194	0.001842	3.8015	0.0018827	495.237955947944	29.74	0.15945	29.74	29.655	29.814	0					6	4	2	0	0	0	0.56424	1	10070	10070		25.574	1.3713	1	53270			8259	6057	4696	4723	8418	8418					-0.03730369498350683
EAQPIVTKY	9	Unmodified	_EAQPIVTKY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.787841796875	2	524.787307	1047.56006	0.70066	0.0003677	-0.080007	-4.1986E-05	0.62065	0.00032571	524.7874213301171	28.279	0.22418	28.279	28.144	28.368	0					12	7	2	0	0	0	0.035062	1	8815	8815		104.06	24.344	1	117190			8260	7818	4697	4724	8419	8419					0.038183232404207956
EAQPIVTKY	9	Unmodified	_EAQPIVTKY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7872924804688	2	524.787307	1047.56006	0.094625	4.9658E-05	1.7654	0.00092647	1.86	0.00097612	524.787549915123	28.523	0.32813	28.523	28.358	28.686	0					20	8	3	0	0	0	0.020674	1	10094	10094		120.87	30.499	1	923830			8261	7818	4697	4724	8420	8420					0.038183232404207956
EAQPIVTKY	9	Unmodified	_EAQPIVTKY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7879638671875	2	524.787307	1047.56006	0.57604	0.0003023	0.92044	0.00048304	1.4965	0.00078534	524.7875352497803	28.282	0.20714	28.282	28.177	28.384	0					22	7	4	0	0	0	0.011389	1	9101	9101		138.06	36.462	1	280520			8262	7818	4697	4724	8421	8421					0.038183232404207956
EAQPIVTKY	9	Unmodified	_EAQPIVTKY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7879638671875	2	524.787307	1047.56006	1.154	0.00060559	0.75277	0.00039504	1.9067	0.0010006	524.7878023346755	28.362	0.29669	28.362	28.193	28.49	0					13	7	3	0	0	0	0.085655	1	9380	9380		82.75	18.543	1	202920			8263	7818	4697	4724	8422	8422					0.038183232404207956
EAQPIVTKY	9	Unmodified	_EAQPIVTKY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.787841796875	2	524.787307	1047.56006	1.627	0.00085384	-0.526	-0.00027604	1.101	0.00057781	524.7869281288649	28.493	0.665	28.493	28.042	28.707	0					28	13	4	0	0	0	0.0016668	1	10344	10344		176.44	63.033	1	1058600			8264	7818	4697	4724	8423	8423					0.038183232404207956
EAQQAPLNY	9	Unmodified	_EAQQAPLNY_					0	0	0		ENST00000366997.8_1_1:211921045-211921129:-|nuORF	ENST00000366997.8_1_1:211921045-211921129:-|nuORF	ENST00000366997.8_1_1:211921045-211921129:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2531127929688	2	517.251089	1032.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.119	1	29.119	28.619	29.619	0								0	0	0	0.3428	1	9158	9158		26.693	1.2427	1				8265	8904	4698	4725	8424	8424					-0.0273201083314234
EAQRNISL	8	Unmodified	_EAQRNISL_					0	0	0		NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant;nc|ENSG00000015520|Q9UHC9-3|NPC1L1;nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1	NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant	NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.75360107421875	2	465.753798	929.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.466	1	30.466	29.966	30.966	0								0	0	0	1.7419	1	9713	9713		56.721	1.9447	1				8266	1081	4699	4726	8425	8425					0.025477127493331864
EAQRWAVLV	9	Unmodified	_EAQRWAVLV_					0	0	0		nc|ENSG00000179526|Q9H0F6-2|SHARPIN;ENSG00000179526|ENST00000398712|SHARPIN	nc|ENSG00000179526|Q9H0F6-2|SHARPIN	nc|ENSG00000179526|Q9H0F6-2|SHARPIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8046264648438	2	536.300916	1070.58728	3.3517	0.0017975	-2.1416	-0.0011485	1.2101	0.00064899	536.8020404977322	27.212	0.4225	27.212	27.07	27.493	0					12	8	2	0	0	0	0.2873	1	9710	9710		26.796	0	1	321830			8267	6770	4700	4727	8426	8426					0.054808515714512396
EAQSSKDQMR	10	Unmodified	_EAQSSKDQMR_					0	0	0		ENSG00000136002|ENST00000409359|ARHGEF4;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.2786865234375	2	590.274769	1178.53499	3.1824	0.0018785	2.8082	0.0016576	5.9906	0.0035361	590.2767887730441	22.687	0.26624	22.687	22.555	22.822	0					19	5	4	0	0	0	0.20981	1	7609	7609		78.264	0.9462	1	1413200			8268	4046	4701	4728	8427	8427					-0.04714099624447954
EAQSSLIGK	9	Unmodified	_EAQSSLIGK_					0	0	0			REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1	REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7556457519531	2	466.756007	931.497461	0.40751	0.00019021	-0.9387	-0.00043815	-0.5312	-0.00024794	466.7554527080492	38.789	0.14033	38.789	38.711	38.851	0					8	5	2	0	0	0	0.085655	1	14756	14756		82.75	5.4329	1	103020	+		8269	16837	4702	4729	8428	8428					0.028971771722467565
EAQVGIPTQL	10	Unmodified	_EAQVGIPTQL_					0	0	0			REV__ENSG00000142252|ENST00000270257|GEMIN7	REV__ENSG00000142252|ENST00000270257|GEMIN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2906494140625	2	528.290214	1054.56587	2.1827	0.0011531	-1.6227	-0.00085726	0.55998	0.00029583	528.2892047953766	41.024	0.2579	41.024	40.914	41.172	0					18	11	2	0	0	0	0.56931	1	15593	15593		37.812	0	1	68813	+		8270	15146	4703	4730	8429	8429					0.040774217520947786
EAQVKRTL	8	Unmodified	_EAQVKRTL_					0	0	0			REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7794189453125	2	472.779816	943.545079	-0.02684	-1.2689E-05	-0.47001	-0.00022221	-0.49685	-0.0002349	472.77951924395757	19.302	0.12749	19.302	19.222	19.349	0					5	3	2	0	0	0	0.3049	1	4961	4961		82.241	7.9855	1	181730	+		8271	12512	4704	4731	8430	8430					0.07104876163089102
EAQVKRTL	8	Unmodified	_EAQVKRTL_					0	0	0			REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7794494628906	2	472.779816	943.545079	-0.52632	-0.00024883	0.067622	3.197E-05	-0.45869	-0.00021686	472.77977658342525	19.36	0.14522	19.36	19.274	19.42	0					5	3	2	0	0	0	0.30066	1	5254	5254		82.75	20.643	1	317400	+		8272	12512	4704	4731	8431	8431					0.07104876163089102
EARDYTLQQ	9	Unmodified	_EARDYTLQQ_					0	0	0			REV__ENST00000311925.6_2_9:34689771-34689972:-|nuORF	REV__ENST00000311925.6_2_9:34689771-34689972:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2744750976562	2	562.272552	1122.53055	3.4703	0.0019512	-0.83695	-0.00047059	2.6333	0.0014807	562.2722814580198	19.765	0.27099	19.765	19.656	19.927	0					18	5	5	0	0	0	0.023074	1	6155	6155		116.9	0	1	9048900	+		8273	18276	4705	4732	8432	8432					-0.025812407757030087
EAREEKVVY	9	Unmodified	_EAREEKVVY_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.79443359375	2	561.793121	1121.57169	1.6333	0.00091756	-0.13225	-7.4298E-05	1.501	0.00084326	561.7930730662017	21.673	0.14679	21.673	21.579	21.726	0					8	3	3	0	0	0	0.1115	1	6933	6933		76.774	35.996	1	222710			8274	7996	4706	4733	8433	8433					0.0157652026375672
EAREEKVVY	9	Unmodified	_EAREEKVVY_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7944946289062	2	561.793121	1121.57169	4.3164	0.0024249	-2.4772	-0.0013917	1.8393	0.0010333	561.7918594780139	21.396	0.11759	21.396	21.324	21.441	0					6	3	2	0	0	0	0.42902	1	6147	6147		39.253	6.4404	1	44677			8275	7996	4706	4733	8434	8434					0.0157652026375672
EAREEKVVY	9	Unmodified	_EAREEKVVY_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7935180664062	2	561.793121	1121.57169	0.68028	0.00038218	0.16113	9.0522E-05	0.84141	0.0004727	561.7931889879668	21.584	0.21709	21.584	21.475	21.692	0					9	4	3	0	0	0	0.22837	1	7189	7189		58.23	13.853	1	708680			8276	7996	4706	4733	8435	8435					0.0157652026375672
EAREEKVVY	9	Unmodified	_EAREEKVVY_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.79345703125	2	561.793121	1121.57169	1.1802	0.00066301	-0.28857	-0.00016212	0.8916	0.0005009	561.7928455675158	21.595	0.2163	21.595	21.488	21.704	0					9	4	3	0	0	0	0.0792	1	7067	7067		84.916	18.486	1	455210			8277	7996	4706	4733	8436	8436					0.0157652026375672
EAREKDVL	8	Unmodified	_EAREKDVL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000175467|ENST00000312397|SART1	REV__ENSG00000175467|ENST00000312397|SART1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.26116943359375	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.12	1	35.12	34.62	35.62	0								0	0	0	1.7419	1	13143	13143		42.396	3.1433	1				8278	16613	4707	4734	8437	8437					0.027445795465155243
EARIESQPS	9	Unmodified	_EARIESQPS_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.75384521484375	2	508.753995	1015.49344	0.91164	0.0004638	-1.1952	-0.00060804	-0.28351	-0.00014424	508.75336756319297	14.954	0.23068	14.954	14.902	15.133	0					6	5	2	0	0	0	0.30951	1	3768	3768		49.442	1.7842	1	218380	+		8279	15181	4708	4735	8438	8438					-0.0136891232148173
EARILCALY	9	Unmodified	_EARILCALY_					0	0	0		nc|ENSG00000073605|Q8TAX9-5|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-6|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB;ENSG00000073605|ENST00000418519|GSDMB	nc|ENSG00000073605|Q8TAX9-5|GSDMB	nc|ENSG00000073605|Q8TAX9-5|GSDMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2830810546875	2	526.283877	1050.5532	0.21873	0.00011511	-2.4669	-0.0012983	-2.2482	-0.0011832	526.2825895091574	26.702	0.16688	26.702	26.644	26.811	0					6	3	2	0	0	0	0.19605	1	9601	9601		62.107	7.3427	1	221320			8280	1513	4709	4736	8439	8439					0.029946870881985888
EARIYSGLL	9	Unmodified	_EARIYSGLL_					0	0	0			REV__F8|p.P1780S|1|0.3|ENSG00000185010|chrX:154906455-154906455|G/A|missense_variant	REV__F8|p.P1780S|1|0.3|ENSG00000185010|chrX:154906455-154906455|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.253662109375	2	511.287474	1020.5604	-1.7562	-0.00089794	1.3424	0.00068633	-0.41387	-0.00021161	511.2882735686637	33.686	0.28751	33.686	33.56	33.848	0					16	8	3	0	0	0	0.53083	1	11804	11804		29.15	0	1	256010	+		8281	20655	4710	4737	8440	8440					0.050937429602981865
EARKQVEVF	9	Unmodified	_EARKQVEVF_					0	0	0		ENST00000558931.5_1_14:24615401-24615790:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3040161132812	2	553.303655	1104.59276	1.8209	0.0010075	0.097823	5.4126E-05	1.9187	0.0010616	553.3044683043336	25.458	0.53362	25.458	25.102	25.636	0					24	12	4	0	0	0	0.026848	1	8695	8695		95.815	42.878	1	705830			8282	2074	4711	4738	8441	8441					0.04464530363270569
EARKQVEVF	9	Unmodified	_EARKQVEVF_					0	0	0		ENST00000558931.5_1_14:24615401-24615790:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.303466796875	2	553.303655	1104.59276	0.2072	0.00011465	0.38763	0.00021448	0.59483	0.00032912	553.3039883680252	25.192	0.25902	25.192	25.03	25.289	0					14	8	2	0	0	0	0.36135	1	7799	7799		37.812	3.639	1	123810			8283	2074	4711	4738	8442	8442					0.04464530363270569
EARKQVEVF	9	Unmodified	_EARKQVEVF_					0	0	0		ENST00000558931.5_1_14:24615401-24615790:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.3037109375	2	553.303655	1104.59276	1.609	0.00089025	-0.31045	-0.00017177	1.2985	0.00071848	553.3037635028146	25.378	0.89415	25.378	25.089	25.983	0					22	12	3	0	0	0	0.037712	1	9022	9022		85.161	20.954	1	623360			8284	2074	4711	4738	8443	8443					0.04464530363270569
EARKQVEVF	9	Unmodified	_EARKQVEVF_					0	0	0		ENST00000558931.5_1_14:24615401-24615790:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.3048706054688	2	553.303655	1104.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.275	1	25.275	24.775	25.775	0								0	0	0	0.19616	1	8012	8012		44.377	0	1				8285	2074	4711	4738	8444	8444					0.04464530363270569
EARKQVEVF	9	Unmodified	_EARKQVEVF_					0	0	0		ENST00000558931.5_1_14:24615401-24615790:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	ENST00000558931.5_1_14:24615401-24615790:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3043823242188	2	553.303655	1104.59276	1.8191	0.0010065	1.093	0.00060479	2.9121	0.0016113	553.3045371648284	25.317	0.57186	25.317	25.044	25.616	0					23	11	3	0	0	0	0.095583	1	8877	8877		64.207	8.7031	1	791420			8286	2074	4711	4738	8445	8445					0.04464530363270569
EARKRKNR	8	Unmodified	_EARKRKNR_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3222045898438	2	529.320506	1056.62646	3.4526	0.0018276	-0.26762	-0.00014166	3.185	0.0016859	529.3203602228746	18.296	0.31647	18.296	18.239	18.555	0					12	6	2	0	0	0	0.25001	1	5464	5464		101.21	21.272	1	3649700			8287	4125	4712	4739	8446	8446					0.10040996645693667
EARKVVLAW	9	Unmodified	_EARKVVLAW_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.318359375	2	536.319109	1070.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.344	1	17.344	16.844	17.844	0								0	0	0	0.27939	1	4119	4119		40.573	10.069	1				8288	4751	4713	4740	8447	8447					0.09117728468163477
EARLVQGSIL	10	Unmodified	_EARLVQGSIL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.3200073242188	2	543.319306	1084.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.011	1	20.011	19.511	20.511	0								0	0	0	0.39665	1	5283	5283		31.53	3.6476	1				8289	3804	4714	4741	8448	8448					0.08513103397376653
EARPLVAAQV	10	Unmodified	_EARPLVAAQV_					0	0	0			REV__nc|ENSG00000140464|P29590-11|PML	REV__nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.3062133789062	2	527.306198	1052.59784	-1.2029	-0.00063429	1.8602	0.00098091	0.65733	0.00034662	527.3070966394791	20.587	0.94588	20.587	20.206	21.152	0					32	22	2	0	0	0	0.62235	1	5773	5773		31.53	4.7337	1	81103	+		8290	15076	4715	4742	8449	8449					0.07364834225904815
EARRHIII	8	Unmodified	_EARRHIII_					0	0	0		GIMAP8|p.N151Kfs*12|1|0.36|ENSG00000171115|chr7:150467143-150467144|-/A|frameshift_variant;GIMAP8|p.T275Sfs*6|1|0.06|ENSG00000171115|chr7:150474152-150474153|-/GTCTCTT|frameshift_variant;GIMAP8|p.S261Vfs*22|1|0.25|ENSG00000171115|chr7:150474106-150474106|A/-|frameshift_variant;GIMAP8|p.F591Lfs*24|1|0.17|ENSG00000171115|chr7:150477551-150477551|T/-|frameshift_variant;ENSG00000171115|ENST00000307271|GIMAP8	GIMAP8|p.N151Kfs*12|1|0.36|ENSG00000171115|chr7:150467143-150467144|-/A|frameshift_variant	GIMAP8|p.N151Kfs*12|1|0.36|ENSG00000171115|chr7:150467143-150467144|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.3106384277344	2	504.309075	1006.6036	2.9314	0.0014783	0.037802	1.9064E-05	2.9692	0.0014974	504.30894596958143	42.255	0.13705	42.255	42.159	42.296	0					7	3	3	0	0	0	0.73426	1	16858	16858		29.15	29.15	1	245890			8291	6278	4716	4743	8450	8450					0.10055977528224957
EARRLGASPK	10	Unmodified	_EARRLGASPK_					0	0	0			REV__ENST00000354336.7_1_22:21271864-21272434:+|nuORF	REV__ENST00000354336.7_1_22:21271864-21272434:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.816650390625	2	542.814722	1083.61489	3.6069	0.0019579	-0.16181	-8.7834E-05	3.4451	0.0018701	542.8146633513414	40.879	0.32968	40.879	40.687	41.016	0					13	5	4	0	0	0	0.46192	1	16226	16226		45.022	0	1	765370	+		8292	18498	4717	4744	8451	8451					0.07642754831681486
EARRQLAALG	10	Unmodified	_EARRQLAALG_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.8162231445312	2	542.814722	1083.61489	0.3171	0.00017213	2.9626	0.0016081	3.2797	0.0017803	542.8160992052693	40.977	0.24224	40.977	40.795	41.037	0					11	6	2	0	0	0	0.54861	1	15575	15575		27.882	0	1	120580			8293	2989	4718	4745	8452	8452					0.07642754831681486
EARRYVDSRCL	11	Unmodified	_EARRYVDSRCL_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.5663757324219	3	456.566465	1366.67757	0.23255	0.00010617	0.21909	0.00010003	0.45163	0.0002062	456.5661652569572	20.774	0.11912	20.774	20.714	20.833	0					4	2	2	0	0	0	0.71641	1	6514	6514		26.063	3.5018	1	46859			8294	1157	4719	4746	8453	8453					0.008895328375956524
EARSSPASSL	10	Unmodified	_EARSSPASSL_					0	0	0			REV__ENSG00000100319|ENST00000344318|ZMAT5	REV__ENSG00000100319|ENST00000344318|ZMAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.755859375	2	502.753995	1003.49344	2.9279	0.001472	1.0011	0.0005033	3.9289	0.0019753	502.75435563848464	36.003	0.46258	36.003	35.704	36.166	0					24	9	4	0	0	0	0.17315	1	13940	13940		82.75	7.7072	1	826100	+		8295	13539	4720	4747	8454	8454					-0.00816912321477048
EARVKKGCH	9	Unmodified	_EARVKKGCH_					0	0	0			REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2801513671875	2	514.276918	1026.53928	4.3883	0.0022568	2.0322	0.0010451	6.4205	0.0033019	514.2778986002484	18.917	0.14625	18.917	18.835	18.981	0					8	4	2	0	0	0	0.12239	1	5022	5022		74.255	2.3776	1	187130	+		8296	14112	4721	4748	8455	8455					0.02707454379765295
EARYDGGLL	9	Unmodified	_EARYDGGLL_					0	0	0			REV__ENSG00000126016|ENST00000371959|AMOT	REV__ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2548522949219	2	497.253631	992.49271	-0.30558	-0.00015195	2.2349	0.0011113	1.9293	0.00095935	497.25495662191065	31.25	0.25625	31.25	31.157	31.413	0					18	6	4	0	0	0	0.055856	1	11361	11361		93.195	5.4412	1	849480	+		8297	14455	4722	4749	8456	8456					-0.003837069705241447
EASAIVIQP	9	Unmodified	_EASAIVIQP_					0	0	0		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.26068115234375	2	464.260925	926.507297	0.72635	0.00033722	-0.51713	-0.00024008	0.20922	9.7134E-05	464.26049912890653	28.833	0.36755	28.833	28.591	28.959	0					19	7	3	0	0	0	0.2873	1	10492	10492		51.335	1.8939	1	348040			8298	11772	4723	4750	8457	8457					0.04110365177609765
EASAKQLNS	9	Unmodified	_EASAKQLNS_					0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.24322509765625	2	474.243264	946.471974	-2.5881	-0.0012274	2.1716	0.0010299	-0.41641	-0.00019748	474.24436923369467	29.292	0.18222	29.292	29.196	29.379	0					6	4	2	0	0	0	0.30841	1	9845	9845		49.536	1.5765	1	105630	+		8299	15515	4724	4751	8458	8458					-0.0034029735019203144
EASAPNLKP	9	Unmodified	_EASAPNLKP_					0	0	0			REV__nc|ENSG00000134709|Q9UJC3-2|HOOK1	REV__nc|ENSG00000134709|Q9UJC3-2|HOOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7501220703125	2	463.750724	925.486896	-0.14293	-6.6282E-05	-1.2275	-0.00056925	-1.3704	-0.00063554	463.75030920267506	30.739	0.14933	30.739	30.649	30.798	0					5	3	2	0	0	0	0.16002	1	11514	11514		66.429	0	1	76978	+		8300	14758	4725	4752	8459	8459					0.021171945177911766
EASAVTVRF	9	Unmodified	_EASAVTVRF_					0	0	0		ENST00000477849.1_1_1:16056358-16058475:+|nuORF;PLEKHM2|p.E769Rfs*51|2|0.23|ENSG00000116786|chr1:15730622-15730622|C/-|frameshift_variant;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	ENST00000477849.1_1_1:16056358-16058475:+|nuORF	ENST00000477849.1_1_1:16056358-16058475:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.26348876953125	2	490.263999	978.513445	0.81178	0.00039799	-2.261	-0.0011085	-1.4492	-0.00071051	490.26282391749476	35.234	0.16412	35.234	35.153	35.317	0					9	4	3	0	0	0	0.21419	1	13205	13205		62.107	16.135	1	209790			8301	3004	4726	4753	8460	8460					0.02332883409144415
EASDYTTK	8	Unmodified	_EASDYTTK_					0	0	0			REV__CLSPN|p.N97Kfs*15|1|0.46|ENSG00000092853|chr1:35764557-35764558|-/T|frameshift_variant	REV__CLSPN|p.N97Kfs*15|1|0.46|ENSG00000092853|chr1:35764557-35764558|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7083435058594	2	457.708722	913.402892	0.77583	0.00035511	-1.386	-0.00063437	-0.61014	-0.00027927	457.70794408299304	17.147	0.25601	17.147	17.058	17.314	0					17	6	3	0	0	0	0.54629	1	4799	4799		55.504	7.5886	1	445290	+		8302	12514	4727	4754	8461	8461					-0.057273813697747755
EASGLSLHY	9	Unmodified	_EASGLSLHY_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7401428222656	2	488.740357	975.46616	0.61567	0.0003009	-0.91986	-0.00044957	-0.30419	-0.00014867	488.7400065779468	29.607	0.30016	29.607	29.367	29.667	0					8	6	2	0	0	0	0.25109	1	10997	10997		55.504	14.726	1	290110			8303	2131	4728	4755	8462	8462					-0.02255395861868692
EASGRIYVY	9	Unmodified	_EASGRIYVY_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2693481445312	2	529.269281	1056.52401	2.2868	0.0012103	-1.2681	-0.00067115	1.0188	0.0005392	529.2685319861737	32.824	0.28141	32.824	32.748	33.03	0					14	7	3	0	0	0	0.030949	1	12080	12080		108.09	24.8	1	324770			8304	4064	4729	4756	8463	8463					-0.0019913393641672883
EASGRIYVY	9	Unmodified	_EASGRIYVY_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2693481445312	2	529.269281	1056.52401	1.6306	0.00086305	-1.1077	-0.00058626	0.52296	0.00027679	529.2687386427896	32.814	0.31513	32.814	32.657	32.972	0					15	6	4	0	0	0	0.027316	1	12394	12394		111.65	28.361	1	664300			8305	4064	4729	4756	8464	8464					-0.0019913393641672883
EASGTTTQAY	10	Unmodified	_EASGTTTQAY_					0	0	0		nc|ENSG00000185345|O60260-4|PRKN;nc|ENSG00000185345|O60260-6|PRKN;nc|ENSG00000185345|O60260-7|PRKN;nc|ENSG00000185345|O60260-8|PRKN;nc|ENSG00000185345|O60260-2|PRKN;ENSG00000185345|ENST00000366898|PRKN	nc|ENSG00000185345|O60260-4|PRKN	nc|ENSG00000185345|O60260-4|PRKN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7286376953125	2	514.730186	1027.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.484	1	36.484	35.984	36.984	0								0	0	0	0.26105	1	13765	13765		56.721	1.2168	1				8306	7075	4730	4757	8465	8465					-0.06680611312344809
EASGVKEKG	9	Unmodified	_EASGVKEKG_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.74005126953125	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.947	1	14.947	14.447	15.447	0								0	0	0	0.21054	1	3161	3161		49.442	0	1				8307	7318	4731	4758	8466	8466					0.010566041381480318
EASKLAPTAH	10	Unmodified	_EASKLAPTAH_					0	0	0		tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.77490234375	2	512.774731	1023.53491	1.0731	0.00055028	-0.45971	-0.00023573	0.61343	0.00031455	512.7744290356233	16.456	0.18432	16.456	16.362	16.546	0					7	4	2	0	0	0	0.31784	1	4476	4476		53.089	27.515	1	507010			8308	22704	4732	4759	8467	8467					0.02408268437852712
EASKLLLTY	9	Unmodified	_EASKLLLTY_					0	0	0		ENST00000463611.1_1_3:25824608-25824881:-|nuORF;NGLY1|p.I101Nfs*3|1|0.22|ENSG00000151092|chr3:25764256-25764257|-/T|frameshift_variant;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;ENST00000493324.5_1_3:25778798-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.298583984375	2	519.297507	1036.58046	1.4312	0.00074321	0.71101	0.00036923	2.1422	0.0011124	519.2978210855314	40.626	0.23632	40.626	40.552	40.788	0					29	14	3	0	0	0	0.011031	1	13113	13113		138.83	9.1429	1	329610			8309	4946	4733	4760	8468	8468					0.06363493900244066
EASKLLLTY	9	Unmodified	_EASKLLLTY_					0	0	0		ENST00000463611.1_1_3:25824608-25824881:-|nuORF;NGLY1|p.I101Nfs*3|1|0.22|ENSG00000151092|chr3:25764256-25764257|-/T|frameshift_variant;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;ENST00000493324.5_1_3:25778798-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.29736328125	2	519.297507	1036.58046	0.17719	9.2017E-05	0.48231	0.00025046	0.6595	0.00034248	519.297587173715	40.779	0.14389	40.779	40.676	40.82	0					14	8	2	0	0	0	0.1115	1	13610	13610		76.774	5.4784	1	125050			8310	4946	4733	4760	8469	8469					0.06363493900244066
EASKLLLTY	9	Unmodified	_EASKLLLTY_					0	0	0		ENST00000463611.1_1_3:25824608-25824881:-|nuORF;NGLY1|p.I101Nfs*3|1|0.22|ENSG00000151092|chr3:25764256-25764257|-/T|frameshift_variant;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;ENST00000493324.5_1_3:25778798-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2977294921875	2	519.297507	1036.58046	1.1311	0.00058737	0.21429	0.00011128	1.3454	0.00069865	519.2975967217209	40.93	0.28746	40.93	40.809	41.097	0					12	7	2	0	0	0	9.7043E-06	1	16102	16102		205.58	13.956	1	436400			8311	4946	4733	4760	8470	8470					0.06363493900244066
EASKLLLTY	9	Unmodified	_EASKLLLTY_					0	0	0		ENST00000463611.1_1_3:25824608-25824881:-|nuORF;NGLY1|p.I101Nfs*3|1|0.22|ENSG00000151092|chr3:25764256-25764257|-/T|frameshift_variant;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;ENST00000493324.5_1_3:25778798-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.297607421875	2	519.297507	1036.58046	1.3304	0.00069088	0.47407	0.00024618	1.8045	0.00093706	519.2976569852914	40.71	0.17517	40.71	40.633	40.808	0					21	9	3	0	0	0	0.063823	1	14433	14433		90.37	13.596	1	200460			8312	4946	4733	4760	8471	8471					0.06363493900244066
EASKLLLTY	9	Unmodified	_EASKLLLTY_					0	0	0		ENST00000463611.1_1_3:25824608-25824881:-|nuORF;NGLY1|p.I101Nfs*3|1|0.22|ENSG00000151092|chr3:25764256-25764257|-/T|frameshift_variant;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;ENST00000493324.5_1_3:25778798-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	ENST00000463611.1_1_3:25824608-25824881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2977905273438	2	519.297507	1036.58046	0.29329	0.00015231	0.25691	0.00013341	0.5502	0.00028572	519.2975826445037	40.9	0.28526	40.9	40.762	41.047	0					12	4	4	0	0	0	9.7043E-06	1	16241	16241		205.58	13.956	1	1820200			8313	4946	4733	4760	8472	8472					0.06363493900244066
EASKLVMSY	9	Unmodified	_EASKLVMSY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2607421875	2	514.260068	1026.50558	1.2648	0.00065046	-0.10334	-5.3144E-05	1.1615	0.00059732	514.260049386827	34.016	0.14627	34.016	33.953	34.099	0					10	6	2	0	0	0	0.14603	1	11109	11109		68.787	7.8149	1	66573			8314	3556;5939	4734	4761	8473	8473					-0.006610119026163375
EASKLVMSY	9	Unmodified	_EASKLVMSY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2603759765625	2	514.260068	1026.50558	1.1485	0.00059061	-1.0011	-0.0005148	0.1474	7.5803E-05	514.2596808343111	34.298	0.40202	34.298	34.181	34.583	0					19	10	3	0	0	0	0.0086566	1	12759	12759		143.89	63.948	1	581430			8315	3556;5939	4734	4761	8474	8474					-0.006610119026163375
EASKLVMSY	9	Unmodified	_EASKLVMSY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2603759765625	2	514.260068	1026.50558	0.68758	0.0003536	0.00032888	1.6913E-07	0.68791	0.00035377	514.2602641299549	34.305	0.3303	34.305	34.185	34.515	0					15	8	3	0	0	0	0.00024018	1	13211	13211		190.52	78.87	1	200130			8316	3556;5939	4734	4761	8475	8475					-0.006610119026163375
EASKLVMSY	9	Unmodified	_EASKLVMSY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.26123046875	2	514.260068	1026.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.093	1	34.093	33.593	34.593	0								0	0	0	0.1219	1	12035	12035		66.429	25.857	1				8317	3556;5939	4734	4761	8476	8476					-0.006610119026163375
EASKLVMSY	9	Unmodified	_EASKLVMSY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.26025390625	2	514.260068	1026.50558	0.12127	6.2363E-05	-0.76919	-0.00039556	-0.64792	-0.0003332	514.2600435809445	34.253	0.40491	34.253	34.101	34.506	0					16	8	3	0	0	0	0.01768	2	13100	13078;13100		125.81	57.027	1	651180			8318	3556;5939	4734	4761	8477;8478	8478					-0.006610119026163375
EASKLYAKM	9	Unmodified	_EASKLYAKM_					0	0	0			REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7755737304688	2	520.775885	1039.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.411	1	29.411	28.911	29.911	0								0	0	0	0.29774	1	10887	10887		35.618	1.4457	1		+		8319	15156	4735	4762	8479	8479					0.019029808513096214
EASKYIMQY	9	Unmodified	_EASKYIMQY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.271728515625	2	566.7708	1131.52705	1.1885	0.00067362	-0.65043	-0.00036865	0.5381	0.00030498	566.7705113871098	35.021	0.26596	35.021	34.936	35.202	0					31	11	4	0	0	0	0.036372	1	11457	11457		102.77	20.468	1	546000			8320	6618	4736	4763	8480	8480					-0.0334562687394282
EASKYIMQY	9	Unmodified	_EASKYIMQY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.7710571289062	2	566.7708	1131.52705	0.22407	0.000127	0.19187	0.00010875	0.41594	0.00023574	566.7710054600003	35.297	0.57005	35.297	35.181	35.751	0					48	15	6	0	0	0	0.0025054	2	13199	13199;13322		171.53	80.755	1	2473600			8321	6618	4736	4763	8481;8482	8481					-0.0334562687394282
EASKYIMQY	9	Unmodified	_EASKYIMQY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.7718505859375	2	566.7708	1131.52705	0.12761	7.2325E-05	0.45061	0.00025539	0.57822	0.00032772	566.7710599049395	35.101	0.23225	35.101	35.012	35.244	0					24	10	3	0	0	0	0.030949	1	11847	11847		108.09	43.88	1	395810			8322	6618	4736	4763	8483	8483					-0.0334562687394282
EASKYIMQY	9	Unmodified	_EASKYIMQY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.771728515625	2	566.7708	1131.52705	-0.32013	-0.00018144	0.81277	0.00046065	0.49264	0.00027922	566.7714171532161	35.092	0.23418	35.092	35.005	35.239	0					20	10	3	0	0	0	0.2873	1	11842	11842		51.335	7.2187	1	308870			8323	6618	4736	4763	8484	8484					-0.0334562687394282
EASKYIMQY	9	Unmodified	_EASKYIMQY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7711791992188	2	566.7708	1131.52705	0.26168	0.00014831	0.20491	0.00011614	0.46659	0.00026445	566.7710305535327	35.28	0.36891	35.28	35.163	35.532	0					31	10	4	0	0	0	0.01768	1	13649	13649		125.81	49.04	1	1266600			8324	6618	4736	4763	8485	8485					-0.0334562687394282
EASKYIMQY	9	Unmodified	_EASKYIMQY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.7711791992188	2	566.7708	1131.52705	-1.2004	-0.00068036	1.8645	0.0010567	0.66409	0.00037639	566.7718145391267	35.059	0.27201	35.059	34.977	35.249	0					24	8	4	0	0	0	0.011031	1	12451	12451		138.83	59.374	1	363720			8325	6618	4736	4763	8486	8486					-0.0334562687394282
EASKYIMQY	9	Oxidation (M)	_EASKYIM(Oxidation (M))QY_		EASKYIM(1)QY		EASKYIM(130)QY	0	0	1		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.7688598632812	2	574.768257	1147.52196	-0.10574	-6.0773E-05	1.6076	0.00092402	1.5019	0.00086325	574.7693963559477	29.007	0.97719	29.007	28.835	29.812	0					28	12	3	0	0	0	0.015338	1	10319	10319		129.68	30.308	1	369590			8326	6618	4736	4764	8487	8487		273			-0.04589930736574388
EASLQAVPPSN	11	Unmodified	_EASLQAVPPSN_					0	0	0		STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.7844848632812	2	556.782753	1111.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.116	1	18.116	17.616	18.616	0								0	0	0	0.44926	1	4680	4680		26.063	0.48933	1				8327	7949	4737	4765	8488	8488					-0.00036070115902475663
EASLWSSGFGM	11	Oxidation (M)	_EASLWSSGFGM(Oxidation (M))_		EASLWSSGFGM(1)		EASLWSSGFGM(70)	0	0	1		nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000468438.1_1_2:96696661-96698107:-|nuORF;ENST00000486463.5_1_2:96693672-96700654:-|nuORF	nc|ENSG00000186281|Q6NUI2-3|GPAT2	nc|ENSG00000186281|Q6NUI2-3|GPAT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.25830078125	2	594.255514	1186.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.434	1	41.434	40.934	41.934	0								0	0	0	0.14038	1	16482	16482		69.628	18.292	1				8328	7129	4738	4766	8489	8489		286			-0.08931405258999803
EASQKAAHGR	10	Unmodified	_EASQKAAHGR_					0	0	0		ENST00000603864.5_1_12:51663522-51663705:-|nuORF	ENST00000603864.5_1_12:51663522-51663705:-|nuORF	ENST00000603864.5_1_12:51663522-51663705:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7748413085938	2	527.773054	1053.53155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.407	1	19.407	18.907	19.907	0								0	0	0	0.40862	1	5250	5250		27.882	1.1893	1				8329	11057	4739	4767	8490	8490					0.006930183838449011
EASQLSEGL	9	Unmodified	_EASQLSEGL_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2294006347656	2	467.229822	932.445091	-0.9987	-0.00046662	0.30162	0.00014093	-0.69707	-0.00032569	467.22995857733116	19.946	0.13809	19.946	19.872	20.011	0					7	4	2	0	0	0	0.44593	1	5497	5497		37.812	1.3648	1	156820	+		8330	14020	4740	4768	8491	8491					-0.023834059613704994
EASQYGRF	8	Unmodified	_EASQYGRF_					0	0	0		THOC2|p.R1038Q|1|0.37|ENSG00000125676|chrX:123624614-123624614|C/T|missense_variant	THOC2|p.R1038Q|1|0.37|ENSG00000125676|chrX:123624614-123624614|C/T|missense_variant	THOC2|p.R1038Q|1|0.37|ENSG00000125676|chrX:123624614-123624614|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.22491455078125	2	479.224874	956.435195	-0.31513	-0.00015102	-0.22367	-0.00010719	-0.5388	-0.00025821	479.2247565735479	20.412	0.18151	20.412	20.31	20.492	0					6	4	2	0	0	0	0.64096	1	5739	5739		42.474	0	1	89088			8331	22531	4741	4769	8492	8492					-0.044765491760927034
EASRELLIP	9	Unmodified	_EASRELLIP_					0	0	0		IGSF9B|p.G435S|1|0.24|ENSG00000080854|chr11:133931518-133931518|C/T|missense_variant	IGSF9B|p.G435S|1|0.24|ENSG00000080854|chr11:133931518-133931518|C/T|missense_variant	IGSF9B|p.G435S|1|0.24|ENSG00000080854|chr11:133931518-133931518|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2925415039062	2	514.292756	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.441	1	14.441	13.941	14.941	0								0	0	0	0.25587	1	3593	3593		35.618	8.9254	1				8332	11219	4742	4770	8493	8493					0.058737256147196604
EASSSKTVP	9	Unmodified	_EASSSKTVP_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant;SFSWAP|p.K760Sfs*72|2|0.23|ENSG00000061936|chr12:131778197-131778197|A/-|frameshift_variant;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.23193359375	2	453.232364	904.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.931	1	14.931	14.431	15.431	0								0	0	0	0.27939	1	3981	3981		39.253	0	1				8333	1326	4743	4771	8494	8494					-0.005871020987569864
EASVHALLSP	10	Unmodified	_EASVHALLSP_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2659301757812	2	512.277106	1022.53966	1.1953	0.00061233	-0.47312	-0.00024237	0.72219	0.00036996	512.2767235601391	35.698	0.25492	35.698	35.591	35.846	0					21	12	3	0	0	0	0.61187	1	11667	11667		32.812	2.3088	1	273900	+		8334	21018	4744	4772	8495	8495					0.029291525806115715
EASWSKRR	8	Unmodified	_EASWSKRR_					0	0	0			REV__ENST00000551835.5_1_12:57998631-57999993:+|nuORF	REV__ENST00000551835.5_1_12:57998631-57999993:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.27191162109375	2	510.27269	1018.53083	-0.43727	-0.00022313	-1.8296	-0.0009336	-2.2669	-0.0011567	510.2722151628562	14.673	0.062569	14.673	14.642	14.704	0					6	2	3	0	0	0	0.49216	1	3223	3223		60.972	0.85368	1	210230	+		8335	20204	4745	4773	8496	8496					0.022302237348071685
EATAQVVQKQ	10	Unmodified	_EATAQVVQKQ_					0	0	0			REV__ENSG00000137073|ENST00000379238|UBAP2	REV__ENSG00000137073|ENST00000379238|UBAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2982788085938	2	551.29857	1100.58259	-1.3546	-0.0007468	0.64715	0.00035678	-0.70746	-0.00039002	551.298926470926	32.105	0.12204	32.105	32.018	32.14	0					6	3	2	0	0	0	0.44601	1	11126	11126		51.193	1.1592	1	63772	+		8336	14900	4746	4774	8497	8497					0.03631922638055585
EATFKEAEKEL	11	Unmodified	_EATFKEAEKEL_					0	0	0		ENSG00000154997|ENST00000388975|SEPTIN14	ENSG00000154997|ENST00000388975|SEPTIN14	ENSG00000154997|ENST00000388975|SEPTIN14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.2223815917969	3	432.222359	1293.64525	-0.43356	-0.00018739	0.25977	0.00011228	-0.17379	-7.5116E-05	432.22242714547076	28.202	0.31301	28.202	28.103	28.416	0					15	7	3	0	0	0	0.60656	1	9339	9339		45.908	45.908	1	368070			8337	5111	4747	4775	8498	8498					0.010170239155968375
EATGPGLIPPP	11	Unmodified	_EATGPGLIPPP_					0	0	0		nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000236761|ENST00000314099|CTAGE9	nc|ENSG00000288784|Q8IX94|CTAGE4	nc|ENSG00000288784|Q8IX94|CTAGE4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7881469726562	2	524.787307	1047.56006	0.53972	0.00028324	1.0946	0.00057444	1.6343	0.00085768	524.7878398110148	25.203	0.27024	25.203	25.11	25.381	0					11	5	3	0	0	0	0.45317	1	8815	8815		47.657	5.2612	1	319690			8338	7911	4748	4776	8499	8499					0.038183232404207956
EATGQFHVY	9	Unmodified	_EATGQFHVY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|166|203.57|0.0|24.28|+|2|CEACAM6,None|1	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2463989257812	2	526.245806	1050.47706	0.62753	0.00033023	0.018664	9.8217E-06	0.64619	0.00034006	526.2458982660654	33.099	0.24836	33.099	33.024	33.272	0					17	11	2	0	0	0	0.077948	1	10732	10732		85.359	27.548	1	127150			8339	1748	4749	4777	8500	8500					-0.04615993487573178
EATGQFHVY	9	Unmodified	_EATGQFHVY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|166|203.57|0.0|24.28|+|2|CEACAM6,None|1	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.24609375	2	526.245806	1050.47706	0.10026	5.2763E-05	0.69138	0.00036384	0.79165	0.0004166	526.2460628895851	33.376	0.29043	33.376	33.248	33.538	0					19	7	4	0	0	0	0.05357	1	12325	12325		94.006	36.195	1	847680			8340	1748	4749	4777	8501	8501					-0.04615993487573178
EATGQFHVY	9	Unmodified	_EATGQFHVY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|166|203.57|0.0|24.28|+|2|CEACAM6,None|1	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.24609375	2	526.245806	1050.47706	0.45254	0.00023815	0.40127	0.00021117	0.85381	0.00044931	526.2459020561372	33.165	0.34554	33.165	33.072	33.418	0					34	14	4	0	0	0	0.1236	1	11097	11097		73.975	16.163	1	786360			8341	1748	4749	4777	8502	8502					-0.04615993487573178
EATGQFHVY	9	Unmodified	_EATGQFHVY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|166|203.57|0.0|24.28|+|2|CEACAM6,None|1	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2466430664062	2	526.245806	1050.47706	1.7661	0.0009294	-0.81358	-0.00042814	0.95251	0.00050126	526.2453858729722	33.394	0.4701	33.394	33.22	33.69	0					24	11	3	0	0	0	0.0024202	1	12765	12765		172.03	74.558	1	4051800			8342	1748	4749	4777	8503	8503					-0.04615993487573178
EATGQFHVY	9	Unmodified	_EATGQFHVY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|166|203.57|0.0|24.28|+|2|CEACAM6,None|1	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2462768554688	2	526.245806	1050.47706	1.2013	0.00063219	-0.35872	-0.00018877	0.84261	0.00044342	526.245651491606	33.149	0.39635	33.149	33.066	33.463	0					22	12	3	0	0	0	0.013383	1	11611	11611		133.81	31.039	1	426890			8343	1748	4749	4777	8504	8504					-0.04615993487573178
EATGQFHVY	9	Unmodified	_EATGQFHVY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|166|203.57|0.0|24.28|+|2|CEACAM6,None|1	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.24609375	2	526.245806	1050.47706	1.6278	0.00085663	-1.1825	-0.00062228	0.44531	0.00023434	526.2451727031388	33.291	0.46721	33.291	33.183	33.65	0					22	9	4	0	0	0	0.0012031	1	12650	12650		180.93	33.233	1	2691700			8344	1748	4749	4777	8505	8505					-0.04615993487573178
EATIDRPPK	9	Unmodified	_EATIDRPPK_					0	0	0			REV__nc|ENSG00000004487|O60341|KDM1A	REV__nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7823486328125	2	513.782556	1025.55056	-0.47485	-0.00024397	-0.18589	-9.5509E-05	-0.66075	-0.00033948	513.7822036994764	26.501	0.16692	26.501	26.393	26.56	0					6	3	2	0	0	0	0.0792	1	9506	9506		84.916	7.5979	1	142230	+		8345	12824	4750	4778	8506	8506					0.03880554954912441
EATKAVTEM	9	Unmodified	_EATKAVTEM_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENST00000490798.5_1_20:43550276-43564067:+|nuORF;ENST00000476056.5_1_20:43550276-43561823:+|nuORF;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.242431640625	2	490.241875	978.469197	1.3293	0.00065167	-0.99615	-0.00048836	0.33314	0.00016332	490.24159203999676	23.072	0.15744	23.072	23.015	23.173	0					8	5	2	0	0	0	0.023074	1	6616	6616		116.9	5.2553	1	111760			8346	1840;1456	4751	4779	8507	8507					-0.02089888799343953
EATKAVTEM	9	Unmodified	_EATKAVTEM_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENST00000490798.5_1_20:43550276-43564067:+|nuORF;ENST00000476056.5_1_20:43550276-43561823:+|nuORF;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2416076660156	2	490.241875	978.469197	-0.069132	-3.3891E-05	-0.75758	-0.0003714	-0.82672	-0.00040529	490.24162529709525	23.35	0.36599	23.35	23.212	23.578	0					17	7	4	0	0	0	0.0086566	1	8028	8028		143.89	33.55	1	1538900			8347	1840;1456	4751	4779	8508	8508					-0.02089888799343953
EATKAVTEM	9	Unmodified	_EATKAVTEM_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENST00000490798.5_1_20:43550276-43564067:+|nuORF;ENST00000476056.5_1_20:43550276-43561823:+|nuORF;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2419128417969	2	490.241875	978.469197	0.5975	0.00029292	-0.1276	-6.2556E-05	0.46989	0.00023036	490.24166004291266	23.181	0.14181	23.181	23.094	23.235	0					5	3	2	0	0	0	0.015338	1	7042	7042		129.68	5.6938	1	80693			8348	1840;1456	4751	4779	8509	8509					-0.02089888799343953
EATKAVTEM	9	Unmodified	_EATKAVTEM_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENST00000490798.5_1_20:43550276-43564067:+|nuORF;ENST00000476056.5_1_20:43550276-43561823:+|nuORF;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2415466308594	2	490.241875	978.469197	-0.53746	-0.00026348	-0.015339	-7.5198E-06	-0.5528	-0.000271	490.24189743057343	23.344	0.26614	23.344	23.235	23.501	0					9	5	2	0	0	0	0.0051608	1	7912	7912		157.33	36.708	1	1140800			8349	1840;1456	4751	4779	8510	8510					-0.02089888799343953
EATKQGRNI	9	Unmodified	_EATKQGRNI_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7784423828125	2	508.777805	1015.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.179	1	19.179	18.679	19.679	0								0	0	0	0.2591	1	5149	5149		42.396	0.058059	1		+		8350	17510	4752	4780	8511	8511					0.03390786669388035
EATKWKAL	8	Unmodified	_EATKWKAL_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7716979980469	2	473.77146	945.528367	-0.48039	-0.00022759	0.68221	0.00032321	0.20182	9.5617E-05	473.77165662547606	25.645	0.13357	25.645	25.57	25.703	0					8	3	3	0	0	0	0.5676	1	8196	8196		53.351	10.955	1	110390	+		8351	16556	4753	4781	8512	8512					0.05342375277132305
EATLGNIEL	9	Unmodified	_EATLGNIEL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2564392089844	2	480.25584	958.497126	3.4608	0.0016621	-2.8935	-0.0013896	0.56731	0.00027245	480.25438193855933	31.355	0.28381	31.355	31.231	31.515	0					14	11	2	0	0	0	0.60749	1	10372	10372		20.947	0	1	54796	+		8352	15602;22247	4754	4782	8513	8513					0.016217574523693656
EATLIPVLSF	10	Unmodified	_EATLIPVLSF_					0	0	0		ENSG00000188690|ENST00000368797|UROS;UROS|p.F196Lfs*44|2|0.43|ENSG00000188690|chr10:125794952-125794952|A/-|frameshift_variant	ENSG00000188690|ENST00000368797|UROS	ENSG00000188690|ENST00000368797|UROS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7772216796875	2	545.313158	1088.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.025	1	40.025	39.525	40.525	0								0	0	0	0.40862	1	15251	15251		27.882	1.1893	1				8353	7266	4755	4783	8514	8514					0.07100066934322058
EATLLQKL	8	Unmodified	_EATLLQKL_					0	0	0		nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant;nc|ENSG00000141519|Q4G0X9-2|CCDC40;CCDC40|p.K1058Nfs*21|1|0.06|ENSG00000141519|chr17:80097395-80097395|A/-|frameshift_variant;ENSG00000141519|ENST00000397545|CCDC40;ENST00000572253.5_1_17:78055330-78055681:+|nuORF	nc|ENSG00000141519|Q4G0X9-3|CCDC40	nc|ENSG00000141519|Q4G0X9-3|CCDC40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2786560058594	2	458.279118	914.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.955	1	34.955	34.455	35.455	0								0	0	0	1.7419	1	11808	11808		34.173	0	1				8354	407	4756	4784	8515	8515					0.08299242074338053
EATLLQKL	8	Unmodified	_EATLLQKL_					0	0	0		nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant;nc|ENSG00000141519|Q4G0X9-2|CCDC40;CCDC40|p.K1058Nfs*21|1|0.06|ENSG00000141519|chr17:80097395-80097395|A/-|frameshift_variant;ENSG00000141519|ENST00000397545|CCDC40;ENST00000572253.5_1_17:78055330-78055681:+|nuORF	nc|ENSG00000141519|Q4G0X9-3|CCDC40	nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.27838134765625	2	458.279118	914.543683	-2.6449	-0.0012121	2.3056	0.0010566	-0.33926	-0.00015547	458.2801590442013	34.942	0.14011	34.942	34.884	35.025	0					6	4	2	0	0	0	0.6088	1	12416	12416		47.657	0	1	69933			8355	407	4756	4784	8516	8516					0.08299242074338053
EATLRIGTAVP	11	Unmodified	_EATLRIGTAVP_					0	0	0		ENST00000395938.6_1_17:15164028-15165863:-|nuORF	ENST00000395938.6_1_17:15164028-15165863:-|nuORF	ENST00000395938.6_1_17:15164028-15165863:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3271484375	2	564.324588	1126.63462	1.8902	0.0010667	1.4414	0.00081343	3.3317	0.0018801	564.3253467061948	17.542	0.80492	17.542	17.351	18.156	0					33	16	3	0	0	0	0.15477	1	5242	5242		79.713	28.52	1	1208100			8356	9198	4757	4785	8517	8517					0.07637086051818187
EATLSKSDKI	10	Unmodified	_EATLSKSDKI_					0	0	0			REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3007202148438	2	546.300778	1090.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.61	1	30.61	30.11	31.11	0								0	0	0	0.36846	1	10073	10073		40.058	0	1		+		8357	17080	4758	4786	8518	8518					0.045333870609510996
EATLWTFTS	9	Unmodified	_EATLWTFTS_					0	0	0		ENST00000521305.5_1_5:179228789-179229839:-|nuORF;ENST00000520134.1_1_5:179228789-179233279:-|nuORF	ENST00000521305.5_1_5:179228789-179229839:-|nuORF	ENST00000521305.5_1_5:179228789-179229839:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2562255859375	2	528.25584	1054.49713	1.7478	0.00092327	-1.638	-0.0008653	0.10973	5.7967E-05	528.2554405730882	31.302	0.6401	31.302	30.982	31.622	0					32	14	3	0	0	0	0.35045	1	11781	11781		45.952	10.334	1	554090			8358	10296	4759	4787	8519	8519					-0.027942425476112476
EATQDDYVL	9	Unmodified	_EATQDDYVL_					0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant	nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.77294921875	2	527.240386	1052.46622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.029	1	17.029	16.529	17.529	0								0	0	0	0.34907	1	3984	3984		25.45	0	1				8359	4635;2429	4760	4788	8520	8520					-0.05791440652524216
EATWNPSL	8	Unmodified	_EATWNPSL_					0	0	0		ENST00000520622.5_1_13:45944147-45944267:+|nuORF	ENST00000520622.5_1_13:45944147-45944267:+|nuORF	ENST00000520622.5_1_13:45944147-45944267:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2232666015625	2	459.2218	916.429047	-0.15644	-7.1839E-05	3.39	0.0015568	3.2336	0.0014849	459.22340806216596	32.98	0.39528	32.98	32.77	33.165	0					12	9	2	0	0	0	0.29152	1	12550	12550		85.359	5.4203	1	98562			8360	10302	4761	4789	8521	8521					-0.03251067407620667
EATWPARR	8	Unmodified	_EATWPARR_					0	0	0			REV__ENST00000311604.7_1_11:1902696-1904704:+|nuORF	REV__ENST00000311604.7_1_11:1902696-1904704:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.76141357421875	2	493.761958	985.509363	-0.62002	-0.00030614	-0.83954	-0.00041453	-1.4596	-0.00072067	493.7614991069482	39.309	0.24165	39.309	39.214	39.455	0					9	5	2	0	0	0	0.37378	1	15514	15514		73.975	5.1879	1	419310	+		8361	18274	4762	4790	8522	8522					0.01602838706082821
EATYIQKL	8	Unmodified	_EATYIQKL_					0	0	0			REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.268798828125	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.729	1	29.729	29.229	30.229	0								0	0	0	1.7419	1	10038	10038		24.203	5.8783	1		+		8362	17447	4763	4791	8523	8523					0.039266516946554475
EAVAHEFQ	8	Unmodified	_EAVAHEFQ_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;ENST00000575833.1_1_16:14234415-14235225:+|nuORF;ENST00000575537.5_1_16:14234415-14243171:+|nuORF;ENST00000572400.5_1_16:14234415-14234826:+|nuORF	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7193603515625	2	465.719424	929.424296	-0.86906	-0.00040474	0.67741	0.00031548	-0.19165	-8.9255E-05	465.7196293824394	24.216	0.20195	24.216	24.15	24.352	0					13	6	3	0	0	0	0.61938	1	7378	7378		45.952	1.8352	1	175050			8363	7128	4764	4792	8524	8524					-0.043239515503842085
EAVAQYRLL	9	Unmodified	_EAVAQYRLL_					0	0	0			REV__ENSG00000170122|ENST00000382500|FOXD4	REV__ENSG00000170122|ENST00000382500|FOXD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.80126953125	2	531.800749	1061.58694	1.7171	0.00091314	-2.1072	-0.0011206	-0.3901	-0.00020746	531.7999951694192	40.423	0.28308	40.423	40.34	40.623	0					30	11	4	0	0	0	0.12239	1	15921	15921		74.255	22.92	1	686180	+		8364	16351	4765	4793	8525	8525					0.058614318515992636
EAVASRDLS	9	Unmodified	_EAVASRDLS_					0	0	0		nc|ENSG00000135052|Q8NBJ4-2|GOLM1;ENSG00000135052|ENST00000388712|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2430419921875	2	474.243264	946.471974	-0.49019	-0.00023247	0.42384	0.000201	-0.066349	-3.1465E-05	474.2435145723185	29.51	0.3006	29.51	29.394	29.694	0					11	7	2	0	0	0	0.33044	1	10542	10542		47.657	1.6851	1	337010			8365	3959	4766	4794	8526	8526					-0.0034029735018066276
EAVCVRGAG	9	Unmodified	_EAVCVRGAG_					0	0	0		ENST00000310862.11_1_13:45985504-45985891:-|nuORF;ENST00000519676.5_1_13:45985504-45992464:-|nuORF	ENST00000310862.11_1_13:45985504-45985891:-|nuORF	ENST00000310862.11_1_13:45985504-45985891:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.21624755859375	2	431.215995	860.417436	0.76835	0.00033133	-0.90108	-0.00038856	-0.13273	-5.7234E-05	431.2156275917217	17.902	0.22417	17.902	17.735	17.959	0					13	5	3	0	0	0	0.35045	1	5110	5110		45.952	3.4775	1	994600			8366	8551	4767	4795	8527	8527					-0.018355877026010603
EAVDIRQI	8	Unmodified	_EAVDIRQI_					0	0	0		nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2648620605469	2	472.263999	942.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.455	1	26.455	25.955	26.955	0								0	0	0	1.7419	1	8321	8321		45.952	1.4209	1				8367	7506	4768	4796	8528	8528					0.03988883409135724
EAVDTGRVL	9	Unmodified	_EAVDTGRVL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2615661621094	2	480.261456	958.50836	0.043936	2.1101E-05	-0.59173	-0.00028419	-0.5478	-0.00026309	480.26138128685744	34.833	0.11829	34.833	34.782	34.901	0					9	5	2	0	0	0	0.19605	1	11401	11401		62.107	5.3864	1	77983			8368	699	4769	4797	8529	8529					0.027445795465155243
EAVDTGRVL	9	Unmodified	_EAVDTGRVL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2619323730469	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.124	1	35.124	34.624	35.624	0								0	0	0	0.073265	1	13588	13588		79.451	2.6044	1				8369	699	4769	4797	8530	8530					0.027445795465155243
EAVDTGRVL	9	Unmodified	_EAVDTGRVL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2611999511719	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.082	1	35.082	34.582	35.582	0								0	0	0	0.10826	1	13510	13510		69.628	2.134	1				8370	699	4769	4797	8531	8531					0.027445795465155243
EAVDTKKPK	9	Unmodified	_EAVDTKKPK_					0	0	0			REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2925109863281	2	508.292756	1014.57096	-0.097772	-4.9697E-05	0.096029	4.8811E-05	-0.0017433	-8.861E-07	508.2929400039063	31.508	0.23066	31.508	31.421	31.651	0					19	10	3	0	0	0	0.27249	1	10118	10118		52.937	8.5595	1	211330	+		8371	19419	4770	4798	8532	8532					0.06425725614701605
EAVEIRIE	8	Unmodified	_EAVEIRIE_					0	0	0			REV__ENSG00000163935|ENST00000394752|SFMBT1	REV__ENSG00000163935|ENST00000394752|SFMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7636413574219	2	479.763832	957.513111	0.027693	1.3286E-05	-0.13277	-6.3696E-05	-0.10507	-5.041E-05	479.76368604161433	22.065	0.14891	22.065	21.989	22.138	0					7	4	2	0	0	0	0.43813	1	6191	6191		66.429	0	1	175160	+		8372	15938	4771	4799	8533	8533					0.03265463689274384
EAVELHNNL	9	Unmodified	_EAVELHNNL_					0	0	0			REV__MIB1|p.V645L|1|0.05|ENSG00000101752|chr18:21838468-21838468|G/T|missense_variant	REV__MIB1|p.V645L|1|0.05|ENSG00000101752|chr18:21838468-21838468|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7647094726562	2	519.764363	1037.51417	1.4035	0.0007295	-1.0388	-0.00053994	0.36471	0.00018956	519.7638630495362	30.014	0.12687	30.014	29.933	30.06	0					6	3	2	0	0	0	0.24095	1	10771	10771		56.721	1.9447	1	352080	+		8373	20884	4772	4800	8534	8534					-0.0030832194181584782
EAVFQTLVQ	9	Unmodified	_EAVFQTLVQ_					0	0	0			REV__TMEM132D|p.R578Q|1|0.45|ENSG00000151952|chr12:129081949-129081949|C/T|missense_variant	REV__TMEM132D|p.R578Q|1|0.45|ENSG00000151952|chr12:129081949-129081949|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.781982421875	2	517.779482	1033.54441	4.7315	0.0024499	-0.083162	-4.3059E-05	4.6483	0.0024068	517.7795083349254	31.001	0.14827	31.001	30.929	31.077	0					9	5	2	0	0	0	0.1424	1	10226	10226		69.628	2.134	1	116450	+		8374	21651	4773	4801	8535	8535					0.028980367233771176
EAVGVSVLAR	10	Unmodified	_EAVGVSVLAR_					0	0	0			REV__ENST00000360031.6_2_20:25176439-25187192:+|nuORF	REV__ENST00000360031.6_2_20:25176439-25187192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.1974792480469	3	334.197708	999.571294	-0.038519	-1.2873E-05	-0.74318	-0.00024837	-0.7817	-0.00026124	334.19739911492184	25.695	0.10847	25.695	25.642	25.75	0					4	2	2	0	0	0	0.60076	1	8221	8221		54.722	23.193	1	125080	+		8375	18552	4774	4802	8536	8536					0.07149145334562945
EAVKGKAR	8	Unmodified	_EAVKGKAR_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7611083984375	2	429.761426	857.5083	1.0073	0.0004329	-1.4831	-0.00063736	-0.47576	-0.00020446	429.76062405344084	31.362	0.31246	31.362	31.258	31.571	0					13	6	3	0	0	0	0.70055	1	11727	11727		33.516	6.7195	1	624750	+		8376	22199	4775	4803	8537	8537					0.07384624337169043
EAVKLCDSY	9	Carbamidomethyl (C)	_EAVKLC(Carbamidomethyl (C))DSY_	EAVKLC(1)DSY		EAVKLC(96)DSY		0	1	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7534790039062	2	542.752607	1083.49066	1.8844	0.0010227	-1.8729	-0.0010165	0.011462	6.2212E-06	542.7523284855484	31.329	0.17139	31.329	31.253	31.424	0					12	4	3	0	0	0	0.047412	1	11405	11405		96.19	22.216	1	281290			8377	3449	4776	4804	8538	8538	142				-0.047745037706590665
EAVKLCDSY	9	Carbamidomethyl (C)	_EAVKLC(Carbamidomethyl (C))DSY_	EAVKLC(1)DSY		EAVKLC(99)DSY		0	1	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.7528686523438	2	542.752607	1083.49066	0.27382	0.00014862	0.27921	0.00015154	0.55303	0.00030016	542.7528201930639	31.131	0.16752	31.131	31.034	31.201	0					17	6	4	0	0	0	0.0406	1	10280	10280		98.629	23.586	1	164500			8378	3449	4776	4804	8539	8539	142				-0.047745037706590665
EAVKLCDSY	9	Carbamidomethyl (C)	_EAVKLC(Carbamidomethyl (C))DSY_	EAVKLC(1)DSY		EAVKLC(190)DSY		0	1	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7529296875	2	542.752607	1083.49066	2.0377	0.001106	-1.9998	-0.0010854	0.037943	2.0594E-05	542.7517402189183	31.341	0.39787	31.341	31.174	31.572	0					21	9	4	0	0	0	0.00024018	1	11819	11819		190.52	68.342	1	905450			8379	3449	4776	4804	8540	8540	142				-0.047745037706590665
EAVKLCDSY	9	Carbamidomethyl (C)	_EAVKLC(Carbamidomethyl (C))DSY_	EAVKLC(1)DSY		EAVKLC(88)DSY		0	1	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7534790039062	2	542.752607	1083.49066	1.0684	0.00057986	-0.48601	-0.00026378	0.58236	0.00031607	542.752266910284	31.111	0.17744	31.111	31.032	31.21	0					9	5	2	0	0	0	0.071197	1	10668	10668		87.754	25.647	1	179340			8380	3449	4776	4804	8541	8541	142				-0.047745037706590665
EAVKLCDSY	9	Carbamidomethyl (C)	_EAVKLC(Carbamidomethyl (C))DSY_	EAVKLC(1)DSY		EAVKLC(160)DSY		0	1	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7527465820312	2	542.752607	1083.49066	2.0251	0.0010991	-1.0805	-0.00058646	0.9446	0.00051269	542.7518748894953	31.311	0.36343	31.311	31.207	31.571	0					13	7	2	0	0	0	0.0051608	1	11684	11684		157.33	50.322	1	1095400			8381	3449	4776	4804	8542	8542	142				-0.047745037706590665
EAVKPTVGM	9	Unmodified	_EAVKPTVGM_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.249755859375	2	466.249503	930.484453	0.22797	0.00010629	-0.63469	-0.00029593	-0.40672	-0.00018963	466.2493378677072	26.784	0.18997	26.784	26.685	26.875	0					9	4	3	0	0	0	0.01768	1	9272	9272		125.81	31.808	1	414570			8382	5683	4777	4805	8543	8543					0.016430227885052773
EAVKPTVGM	9	Unmodified	_EAVKPTVGM_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2497253417969	2	466.249503	930.484453	4.045	0.001886	-3.7315	-0.0017398	0.31351	0.00014617	466.2474905899499	26.514	0.15088	26.514	26.469	26.619	0					7	5	2	0	0	0	0.37197	1	8349	8349		44.117	6.9577	1	57362			8383	5683	4777	4805	8544	8544					0.016430227885052773
EAVKPTVGM	9	Unmodified	_EAVKPTVGM_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2490539550781	2	466.249503	930.484453	-0.13498	-6.2934E-05	-0.67561	-0.000315	-0.81059	-0.00037794	466.24926249715776	26.786	0.26708	26.786	26.677	26.944	0					11	5	3	0	0	0	0.014688	1	9618	9618		131.03	48.791	1	852390			8384	5683	4777	4805	8545	8545					0.016430227885052773
EAVKPTVGM	9	Unmodified	_EAVKPTVGM_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.24920654296875	2	466.249503	930.484453	-0.49926	-0.00023278	0.48721	0.00022716	-0.01205	-5.6183E-06	466.24969886689365	26.73	0.21752	26.73	26.603	26.821	0					8	4	3	0	0	0	0.18605	1	9483	9483		63.306	0	1	223670			8385	5683	4777	4805	8546	8546					0.016430227885052773
EAVKQYSSY	9	Unmodified	_EAVKQYSSY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7591552734375	2	537.758746	1073.50294	-0.32163	-0.00017296	1.7148	0.00092217	1.3932	0.00074921	537.7594781817982	24.652	0.17838	24.652	24.585	24.763	0					10	6	2	0	0	0	0.0086566	1	7576	7576		143.89	28.393	1	243820			8386	6242	4778	4806	8547	8547					-0.03087144035930578
EAVKQYSSY	9	Unmodified	_EAVKQYSSY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7593383789062	2	537.758746	1073.50294	1.8925	0.0010177	-0.22518	-0.00012109	1.6674	0.00089664	537.7582276001202	24.899	0.41185	24.899	24.694	25.106	0					22	8	4	0	0	0	5.4201E-05	1	8781	8781		195.06	61.251	1	1426400			8387	6242	4778	4806	8548	8548					-0.03087144035930578
EAVKQYSSY	9	Unmodified	_EAVKQYSSY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7593994140625	2	537.758746	1073.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.762	1	24.762	24.262	25.262	0								0	0	0	0.015064	1	7772	7772		104.06	29.802	1				8388	6242	4778	4806	8549	8549					-0.03087144035930578
EAVKQYSSY	9	Unmodified	_EAVKQYSSY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7590942382812	2	537.758746	1073.50294	-1.4385	-0.00077356	2.3932	0.001287	0.95471	0.0005134	537.7599993305201	24.728	0.18811	24.728	24.626	24.814	0					10	4	4	0	0	0	0.063823	1	7760	7760		90.37	16.115	1	204450			8389	6242	4778	4806	8550	8550					-0.03087144035930578
EAVKQYSSY	9	Unmodified	_EAVKQYSSY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7593383789062	2	537.758746	1073.50294	3.3428	0.0017976	-2.5108	-0.0013502	0.832	0.00044741	537.7573759655302	24.846	0.25619	24.846	24.739	24.996	0					10	5	2	0	0	0	0.0406	1	8636	8636		98.629	10.875	1	1371600			8390	6242	4778	4806	8551	8551					-0.03087144035930578
EAVLGRIAAQ	10	Unmodified	_EAVLGRIAAQ_					0	0	0			REV__nc|ENSG00000035403|P18206-2|VCL	REV__nc|ENSG00000035403|P18206-2|VCL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2984008789062	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.306	1	54.306	53.806	54.806	0								0	0	0	0.4201	1	15945	15945		19.997	0.89325	1		+		8391	12980	4779	4807	8552	8552					0.06996547708831713
EAVLPRTLT	9	Unmodified	_EAVLPRTLT_					0	0	0		ENST00000378119.8_1_6:24720856-24721054:-|nuORF	ENST00000378119.8_1_6:24720856-24721054:-|nuORF	ENST00000378119.8_1_6:24720856-24721054:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2954406738281	2	500.295299	998.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.505	1	35.505	35.005	36.005	0								0	0	0	0.11736	1	11634	11634		67.494	1.0644	1				8392	9062	4780	4808	8553	8553					0.07670029477333173
EAVMEGKVKT	10	Oxidation (M)	_EAVM(Oxidation (M))EGKVKT_		EAVM(1)EGKVKT		EAVM(74)EGKVKT	0	0	1			REV__ENST00000216629.10_1_14:96722250-96722388:+|nuORF	REV__ENST00000216629.10_1_14:96722250-96722388:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.29296875	2	554.289356	1106.56416	3.6017	0.0019964	3.7752	0.0020926	7.3769	0.0040889	554.2908950376748	24.631	0.20838	24.631	24.547	24.756	0					10	4	3	0	0	0	0.24329	1	8544	8544		74.165	14.234	1	470430	+		8393	17885	4781	4809	8554	8554		671			0.015140446718305611
EAVQIQFGL	9	Unmodified	_EAVQIQFGL_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7763977050781	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.393	1	28.393	27.893	28.893	0								0	0	0	0.20989	1	9418	9418		34.173	0	1				8394	1544	4782	4810	8555	8555					0.03222054068965008
EAVSPERL	8	Unmodified	_EAVSPERL_					0	0	0		MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant;MAML1|p.A378Qfs*63|1|0.17|ENSG00000161021|chr5:179766137-179766137|C/-|frameshift_variant;ENSG00000161021|ENST00000292599|MAML1;MAML1|p.L161Sfs*23|1|0.31|ENSG00000161021|chr5:179765486-179765486|C/-|frameshift_variant	MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant	MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.74261474609375	2	450.742899	899.471246	0.69172	0.00031179	-1.9891	-0.00089659	-1.2974	-0.00058481	450.7424285432368	18.415	0.47193	18.415	18.038	18.51	0					22	9	3	0	0	0	0.60719	1	5656	5656		47.916	1.9636	1	522230			8395	5400	4783	4811	8556	8556					0.017489080007635494
EAVTDEPAK	9	Unmodified	_EAVTDEPAK_					0	0	0			REV__MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant	REV__MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2376708984375	2	480.237647	958.460741	0.67629	0.00032478	1.6909	0.00081205	2.3672	0.0011368	480.23702894042293	24.92	0.51298	24.92	24.593	25.106	0					28	10	4	0	0	0	0.18416	1	8807	8807		63.534	6.8128	1	597010	+		8396	16159	4784	4812	8557	8557					-0.020151194443315035
EAVTVVREVL	10	Unmodified	_EAVTVVREVL_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.2203063964844	3	372.220401	1113.63937	-0.11838	-4.4063E-05	-0.21569	-8.0283E-05	-0.33407	-0.00012435	372.2203057074327	23.938	0.29248	23.938	23.713	24.006	0					9	7	2	0	0	0	0.64162	1	7407	7407		29.17	4.0441	1	69620			8397	4080	4785	4813	8558	8558					0.08709970194558991
EAVVENPLN	9	Unmodified	_EAVVENPLN_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000253305|ENST00000520790|PCDHGB6	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.752685546875	2	492.753464	983.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.531	1	32.531	32.031	33.031	0								0	0	0	0.099216	1	11951	11951		71.877	10.906	1				8398	7997	4786	4814	8559	8559					-3.1266903874893615E-05
EAVVNAVFI	9	Unmodified	_EAVVNAVFI_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2688903808594	2	481.271293	960.528032	0.68652	0.0003304	-3.934	-0.0018933	-3.2474	-0.0015629	481.26858806213556	11.803	0.137	11.803	11.693	11.83	0					9	4	3	0	0	0	0.61124	1	2499	2499		11.511	1.2458	1	94363			8399	7479	4787	4815	8560	8560					0.04618955557270965
EAVYSEPGTY	10	Unmodified	_EAVYSEPGTY_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2496948242188	2	558.248212	1114.48187	1.7409	0.00097188	0.21203	0.00011836	1.953	0.0010902	558.2482835394324	33.649	3.7388	33.649	33.388	37.127	0					172	103	2	0	0	0	0.60076	1	13209	13209		34.173	0	1	21504000	+		8400	15460	4788	4816	8561	8561					-0.07079154135453791
EAWASKDATY	10	Unmodified	_EAWASKDATY_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.2622680664062	2	571.261653	1140.50875	1.4665	0.00083778	-0.48363	-0.00027628	0.98291	0.0005615	571.2613660678595	29.925	0.22698	29.925	29.846	30.073	0					20	8	3	0	0	0	0.022799	1	9475	9475		123.21	40.458	1	186750			8401	5911	4789	4817	8562	8562					-0.05588045524268637
EAWASKDATY	10	Unmodified	_EAWASKDATY_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.2616577148438	2	571.261653	1140.50875	1.7465	0.00099771	-1.4537	-0.00083047	0.29277	0.00016725	571.2608849492897	30.169	0.52985	30.169	30.05	30.579	0					47	13	6	0	0	0	6.7747E-06	1	10848	10848		195.57	60.762	1	1583100			8402	5911	4789	4817	8563	8563					-0.05588045524268637
EAWASKDATY	10	Unmodified	_EAWASKDATY_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.262451171875	2	571.261653	1140.50875	0.089154	5.093E-05	0.65203	0.00037248	0.74119	0.00042341	571.2621508521754	29.954	0.36499	29.954	29.806	30.171	0					19	14	3	0	0	0	0.026898	1	9791	9791		120.31	32.61	1	236690			8403	5911	4789	4817	8564	8564					-0.05588045524268637
EAWASKDATY	10	Unmodified	_EAWASKDATY_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.2625732421875	2	571.261653	1140.50875	2.0063	0.0011461	-0.94332	-0.00053888	1.063	0.00060723	571.2611500376757	30.169	0.47032	30.169	29.993	30.464	0					21	9	4	0	0	0	0.006574	1	11265	11265		160.82	12.779	1	943610			8404	5911	4789	4817	8565	8565					-0.05588045524268637
EAWASKDATY	10	Unmodified	_EAWASKDATY_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.7634887695312	2	571.261653	1140.50875	0.62205	0.00035535	-0.33917	-0.00019375	0.28288	0.0001616	571.2614779662156	29.978	0.2593	29.978	29.899	30.158	0					12	6	3	0	0	0	0.0045666	1	10140	10140		167.23	37.546	1	320870			8405	5911	4789	4817	8566	8566					-0.05588045524268637
EAWASKDATY	10	Unmodified	_EAWASKDATY_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2618408203125	2	571.261653	1140.50875	0.16476	9.4121E-05	0.33807	0.00019313	0.50283	0.00028725	571.2617190006557	30.108	0.31227	30.108	29.997	30.309	0					11	6	3	0	0	0	0.0075039	1	11118	11118		155.58	36.842	1	552020			8406	5911	4789	4817	8567	8567					-0.05588045524268637
EAWASKDATY	10	Unmodified	_EAWASKDATY_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2619018554688	2	571.261653	1140.50875	1.6344	0.00093366	-0.94561	-0.00054019	0.68876	0.00039346	571.2611989200709	30.134	0.8004	30.134	29.98	30.78	0					40	16	4	0	0	0	4.1685E-10	1	11110	11110		218.58	56.679	1	1764100			8407	5911	4789	4817	8568	8568					-0.05588045524268637
EAWKHVEA	8	Unmodified	_EAWKHVEA_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000572004.1_1_17:1442150-1442237:-|nuORF	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.74456787109375	2	485.243067	968.47158	-0.65431	-0.0003175	0.070103	3.4017E-05	-0.5842	-0.00028348	485.2430183495988	28.487	0.2165	28.487	28.348	28.565	0					6	4	2	0	0	0	0.59773	1	10439	10439		49.442	1.5259	1	85340			8408	6478	4790	4818	8569	8569					-0.013916722793965164
EAWSLELYPRW	11	Unmodified	_EAWSLELYPRW_					0	0	0			REV__ENSG00000168517|ENST00000589230|HEXIM2	REV__ENSG00000168517|ENST00000589230|HEXIM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.91021728515625	3	483.910227	1448.70885	-0.096987	-4.6933E-05	0.73131	0.00035389	0.63432	0.00030696	483.9106359848887	35.861	0.10995	35.861	35.759	35.869	0					5	3	2	0	0	0	0.78699	1	13925	13925		17.833	0.6664	1	42337	+		8409	16266	4791	4819	8570	8570					0.0024442914329938503
EAWYRGSH	8	Unmodified	_EAWYRGSH_					0	0	0			REV__nc|ENSG00000147955|Q99720-5|SIGMAR1	REV__nc|ENSG00000147955|Q99720-5|SIGMAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2291259765625	2	503.230491	1004.44643	-2.0472	-0.0010302	-0.41077	-0.00020671	-2.458	-0.001237	503.23033972102985	19.651	0.48204	19.651	19.437	19.919	0					29	11	4	0	0	0	0.7126	1	5329	5329		31.955	2.8053	1	1241800	+		8410	15370	4792	4820	8571	8571					-0.05561727081942536
EAYGKPVKY	9	Unmodified	_EAYGKPVKY_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7824096679688	2	527.782025	1053.5495	0.55055	0.00029057	0.98405	0.00051936	1.5346	0.00080993	527.7823591426978	21.616	0.14396	21.616	21.539	21.683	0					9	4	3	0	0	0	0.023074	1	5986	5986		116.9	42.929	1	195140			8411	7696	4793	4821	8572	8572					0.024863405860060084
EAYGKPVKY	9	Unmodified	_EAYGKPVKY_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7822265625	2	527.782025	1053.5495	0.10621	5.6055E-05	0.45946	0.0002425	0.56567	0.00029855	527.7821386685588	21.906	0.26533	21.906	21.809	22.075	0					15	6	3	0	0	0	0.055856	1	7045	7045		93.195	24.409	1	1175900			8412	7696	4793	4821	8573	8573					0.024863405860060084
EAYKDELHKM	10	Unmodified	_EAYKDELHKM_					0	0	0			REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1	REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.8734130859375	3	421.872784	1262.59652	-0.333	-0.00014048	0.55293	0.00023327	0.21993	9.2782E-05	421.8730453711646	36.241	0.61161	36.241	36.132	36.744	0					23	12	3	0	0	0	0.63019	1	14199	14199		30.569	4.9948	1	181730	+		8413	15851	4794	4822	8574	8574					-0.024271679252024114
EAYLDSLAPR	10	Unmodified	_EAYLDSLAPR_					0	0	0		ENST00000341807.8_1_8:139668156-139688814:-|nuORF	ENST00000341807.8_1_8:139668156-139688814:-|nuORF	ENST00000341807.8_1_8:139668156-139688814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.8648376464844	3	378.864506	1133.57169	0.52008	0.00019704	0.66479	0.00025187	1.1849	0.00044891	379.19913516779036	20.347	0.52482	20.347	20.277	20.802	0					17	16	2	0	0	0	0.67098	1	5425	5425		24.232	0	1	247430			8414	8737	4795	4823	8575	8575					0.010245202637634065
EAYNAVVRY	9	Unmodified	_EAYNAVVRY_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.775146484375	2	542.774731	1083.53491	1.8844	0.0010228	-0.92463	-0.00050187	0.95978	0.00052095	542.7742892037406	32.829	0.2059	32.829	32.748	32.954	0					8	5	2	0	0	0	0.02429	1	12099	12099		110.12	8.5192	1	203710			8415	5422	4796	4824	8576	8576					-0.003517315621365924
EAYNAVVRY	9	Unmodified	_EAYNAVVRY_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7742919921875	2	542.774731	1083.53491	0.62107	0.0003371	-0.58255	-0.0003162	0.038518	2.0906E-05	542.7740614880652	32.832	0.17063	32.832	32.721	32.892	0					5	3	2	0	0	0	0.22837	1	12405	12405		60.972	7.6205	1	84220			8416	5422	4796	4824	8577	8577					-0.003517315621365924
EAYPDHTQF	9	Unmodified	_EAYPDHTQF_					0	0	0		nc|ENSG00000151500|Q9P016-2|THYN1;THYN1|p.N194Ifs*15|2|0.22|ENSG00000151500|chr11:134248859-134248859|T/-|frameshift_variant;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2424926757812	2	554.240721	1106.46689	1.3127	0.00072753	-0.17006	-9.4253E-05	1.1426	0.00063327	554.2405096808371	30.19	0.26841	30.19	30.084	30.352	0					21	9	3	0	0	0	0.14603	1	9577	9577		68.787	26.391	1	255270			8417	4970	4797	4825	8578	8578					-0.08208601212800204
EAYPDHTQF	9	Unmodified	_EAYPDHTQF_					0	0	0		nc|ENSG00000151500|Q9P016-2|THYN1;THYN1|p.N194Ifs*15|2|0.22|ENSG00000151500|chr11:134248859-134248859|T/-|frameshift_variant;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2411499023438	2	554.240721	1106.46689	0.60595	0.00033584	0.28291	0.0001568	0.88886	0.00049264	554.2406936933409	30.441	0.43071	30.441	30.272	30.703	0					29	10	4	0	0	0	0.037569	1	10962	10962		101.6	46.097	1	1403000			8418	4970	4797	4825	8579	8579					-0.08208601212800204
EAYPDHTQF	9	Unmodified	_EAYPDHTQF_					0	0	0		nc|ENSG00000151500|Q9P016-2|THYN1;THYN1|p.N194Ifs*15|2|0.22|ENSG00000151500|chr11:134248859-134248859|T/-|frameshift_variant;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.2413330078125	2	554.240721	1106.46689	0.16607	9.2042E-05	0.96915	0.00053714	1.1352	0.00062918	554.2412825937937	30.239	0.31831	30.239	30.074	30.393	0					17	11	3	0	0	0	0.087861	1	9909	9909		82.241	15.811	1	221390			8419	4970	4797	4825	8580	8580					-0.08208601212800204
EAYPDHTQF	9	Unmodified	_EAYPDHTQF_					0	0	0		nc|ENSG00000151500|Q9P016-2|THYN1;THYN1|p.N194Ifs*15|2|0.22|ENSG00000151500|chr11:134248859-134248859|T/-|frameshift_variant;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2416381835938	2	554.240721	1106.46689	1.6347	0.00090601	-0.30893	-0.00017122	1.3257	0.00073478	554.2404027928677	30.456	0.51913	30.456	30.263	30.782	0					27	11	3	0	0	0	0.1424	1	11377	11377		69.628	16.276	1	1524400			8420	4970	4797	4825	8581	8581					-0.08208601212800204
EAYPDHTQF	9	Unmodified	_EAYPDHTQF_					0	0	0		nc|ENSG00000151500|Q9P016-2|THYN1;THYN1|p.N194Ifs*15|2|0.22|ENSG00000151500|chr11:134248859-134248859|T/-|frameshift_variant;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2411499023438	2	554.240721	1106.46689	-0.017452	-9.6727E-06	0.93126	0.00051614	0.91381	0.00050647	554.2410375267069	30.466	0.21253	30.466	30.334	30.546	0					9	4	3	0	0	0	0.063823	1	11388	11388		90.37	42.454	1	251380			8421	4970	4797	4825	8582	8582					-0.08208601212800204
EAYPDHTQF	9	Unmodified	_EAYPDHTQF_					0	0	0		nc|ENSG00000151500|Q9P016-2|THYN1;THYN1|p.N194Ifs*15|2|0.22|ENSG00000151500|chr11:134248859-134248859|T/-|frameshift_variant;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	nc|ENSG00000151500|Q9P016-2|THYN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.240966796875	2	554.240721	1106.46689	3.6041	0.0019976	-2.3551	-0.0013053	1.2491	0.00069228	554.2393493568655	30.417	0.90143	30.417	29.963	30.865	0					40	18	3	0	0	0	0.098791	1	11247	11247		79.713	26.361	1	1898900			8422	4970	4797	4825	8583	8583					-0.08208601212800204
EAYTDHATY	9	Unmodified	_EAYTDHATY_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7255249023438	2	535.724904	1069.43525	1.8176	0.00097372	-0.76647	-0.00041062	1.0511	0.00056311	535.7244546140581	25.695	0.29889	25.695	25.586	25.885	0					7	4	2	0	0	0	0.062676	1	9161	9161		90.777	37.425	1	1292000			8423	7380	4798	4826	8584	8584					-0.09668593966739536
EAYTDHATY	9	Unmodified	_EAYTDHATY_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7254638671875	2	535.724904	1069.43525	1.901	0.0010184	-0.77595	-0.0004157	1.1251	0.00060272	535.724388056346	25.659	0.22028	25.659	25.498	25.718	0					10	4	3	0	0	0	0.18605	1	9023	9023		63.306	9.9548	1	916740			8424	7380	4798	4826	8585	8585					-0.09668593966739536
EAYVYSRIQLL	11	Unmodified	_EAYVYSRIQLL_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.58575439453125	3	452.25036	1353.72925	-0.022743	-1.0286E-05	1.9164	0.0008667	1.8937	0.00085641	452.58551712121357	20.854	0.076382	20.854	20.814	20.89	0					5	3	2	0	0	0	0.50799	1	5655	5655		43.651	16.007	1	52341	+		8425	13050	4799	4827	8586	8586					0.06653599803166799
EAYVYSRIQLL	11	Unmodified	_EAYVYSRIQLL_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.25128173828125	3	452.25036	1353.72925	0.67175	0.0003038	1.0608	0.00047976	1.7326	0.00078355	452.2508304968437	21.138	0.17744	21.138	21.052	21.23	0					10	4	3	0	0	0	0.59204	1	6681	6681		37.508	9.4267	1	741040	+		8426	13050	4799	4827	8587	8587					0.06653599803166799
ECAPLDVALQ	10	Unmodified	_ECAPLDVALQ_					0	0	0			REV__ENSG00000196581|ENST00000378191|AJAP1	REV__ENSG00000196581|ENST00000378191|AJAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2650756835938	2	529.762975	1057.5114	1.7352	0.00091923	2.9948	0.0015865	4.73	0.0025058	529.7658945702559	41.1	0.20732	41.1	41.034	41.241	0					12	8	2	0	0	0	0.52275	1	16183	16183		42.864	1.4377	1	68347	+		8427	17272	4800	4828	8588	8588					-0.01505913390974456
ECARRMKK	8	Unmodified	_ECARRMKK_					0	0	0		ENST00000470373.1_1_1:1564879-1565907:+|nuORF;ENST00000511502.5_1_1:1563563-1565907:+|nuORF;ENST00000506488.5_1_1:1562112-1565907:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2	ENST00000470373.1_1_1:1564879-1565907:+|nuORF	ENST00000470373.1_1_1:1564879-1565907:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2715759277344	2	511.273321	1020.53209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.326	1	21.326	20.826	21.826	0								0	0	0	1.7419	1	6760	6760		53.351	5.3919	1				8428	7468	4801	4829	8589	8589					0.022643985077138495
ECCHRDLGERG	11	Carbamidomethyl (C)	_ECC(Carbamidomethyl (C))HRDLGERG_	EC(0.009)C(0.991)HRDLGERG		EC(-20)C(20)HRDLGERG		0	1	0			REV__ENST00000317025.12_1_8:38129919-38130090:-|nuORF	REV__ENST00000317025.12_1_8:38129919-38130090:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.5247802734375	3	444.52416	1330.55065	-0.20743	-9.2206E-05	1.1877	0.00052797	0.9803	0.00043577	444.5249142121563	26.385	0.36235	26.385	26.232	26.594	0					19	7	4	0	0	0	0.42065	1	9422	9422		50.034	8.9534	2	1102700	+		8429	18310	4802	4830	8590	8590	644				-0.10140136379095566
ECCQFSLKAK	10	Unmodified	_ECCQFSLKAK_					0	0	0			REV__ENSG00000162714|ENST00000682384|ZNF496	REV__ENSG00000162714|ENST00000682384|ZNF496	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.7747802734375	2	578.778102	1155.54165	-0.4131	-0.00023909	-3.2552	-0.001884	-3.6683	-0.0021231	578.7751537728393	31.02	0.15713	31.02	30.92	31.077	0					5	3	2	0	0	0	0.60281	1	11669	11669		33.922	1.1092	1	230700	+		8430	15834	4803	4831	8591	8591					-0.029898779974473655
ECCSEPCDD	9	Unmodified	_ECCSEPCDD_					0	0	0			REV__ENSG00000243489|ENST00000334670|KRTAP10-11	REV__ENSG00000243489|ENST00000334670|KRTAP10-11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.6394958496094	2	500.638268	999.261983	-0.13109	-6.5629E-05	-3.2352	-0.0016196	-3.3662	-0.0016853	501.13791141877374	49.749	0.83887	49.749	49.418	50.257	0					86	35	3	0	0	0	0.61124	1	17991	17991		1.2052	0	1	176260	+	+	8431	17702	4804	4832	8592	8592					-0.23767787401357054
ECCSEPCDD	9	Unmodified	_ECCSEPCDD_					0	0	0			REV__ENSG00000243489|ENST00000334670|KRTAP10-11	REV__ENSG00000243489|ENST00000334670|KRTAP10-11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.1377868652344	2	500.638268	999.261983	-0.59348	-0.00029712	-3.1656	-0.0015848	-3.7591	-0.001882	501.1381247324281	49.658	0.669	49.658	49.338	50.007	0					61	25	3	0	0	0	0.61124	1	18613	18613		1.2052	0.10972	1	123640	+	+	8432	17702	4804	4832	8593	8593					-0.23767787401357054
ECEDIKKIL	9	Unmodified	_ECEDIKKIL_					0	0	0		PMFBP1|p.K427Rfs*17|1|0.45|ENSG00000118557|chr16:72132915-72132915|T/-|frameshift_variant;nc|ENSG00000118557|Q8TBY8-3|PMFBP1;nc|ENSG00000118557|Q8TBY8-4|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	PMFBP1|p.K427Rfs*17|1|0.45|ENSG00000118557|chr16:72132915-72132915|T/-|frameshift_variant	PMFBP1|p.K427Rfs*17|1|0.45|ENSG00000118557|chr16:72132915-72132915|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7947387695312	2	545.794275	1089.574	-1.4983	-0.00081775	1.658	0.00090495	0.15978	8.7204E-05	545.7954773087729	35.824	0.085236	35.824	35.773	35.858	0					5	3	2	0	0	0	0.46194	1	12796	12796		36.447	0.12911	1	41521			8433	3079	4805	4833	8594	8594					0.0327923267720962
ECEIKLEG	8	Unmodified	_ECEIKLEG_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2D|p.G5182Afs*61|1|0.57|ENSG00000167548|chr12:49026421-49026421|C/-|frameshift_variant;KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant;KMT2D|p.T4629Pfs*11|1|0.27|ENSG00000167548|chr12:49030395-49030395|G/-|frameshift_variant;KMT2D|p.S4327Afs*57|1|0.44|ENSG00000167548|chr12:49031727-49031727|G/-|frameshift_variant;KMT2D|p.Q4156Nfs*5|1|0.15|ENSG00000167548|chr12:49032239-49032239|G/-|frameshift_variant;KMT2D|p.A3552Sfs*4|1|0.51|ENSG00000167548|chr12:49034153-49034154|-/T|frameshift_variant;KMT2D|p.P3102Lfs*17|1|0.26|ENSG00000167548|chr12:49038051-49038051|G/-|frameshift_variant;KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;KMT2D|p.Y2907Tfs*3|1|0.26|ENSG00000167548|chr12:49038637-49038637|A/-|frameshift_variant;KMT2D|p.G2279Wfs*20|1|0.45|ENSG00000167548|chr12:49040935-49040936|-/A|frameshift_variant;KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant;KMT2D|p.S2532Lfs*11|1|0.24|ENSG00000167548|chr12:49040177-49040177|G/-|frameshift_variant;KMT2D|p.P2354Lfs*30|7|0.16|ENSG00000167548|chr12:49040709-49040709|G/-|frameshift_variant;KMT2D|p.A2119Lfs*25|1|0.13|ENSG00000167548|chr12:49041416-49041416|G/-|frameshift_variant	nc|ENSG00000167548|O14686-3|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7242126464844	2	460.723318	919.432083	2.5444	0.0011723	-0.38582	-0.00017775	2.1586	0.0009945	460.7231727668967	14.737	0.46926	14.737	14.677	15.146	0					19	9	4	0	0	0	0.59773	1	3743	3743		49.442	1.5259	1	3113800			8434	6000	4806	4834	8595	8595					-0.030855603451186653
ECESDWTQL	9	Unmodified	_ECESDWTQL_					0	0	0			REV__ENST00000546571.5_1_12:109095090-109123983:-|nuORF	REV__ENST00000546571.5_1_12:109095090-109123983:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7232055664062	2	555.724046	1109.43354	0.58206	0.00032346	-1.9561	-0.0010871	-1.3741	-0.0007636	555.7231524997675	14.374	0.16691	14.374	14.25	14.417	0					7	4	2	0	0	0	0.54267	1	3497	3497		27.882	0	1	435550	+		8435	20170	4807	4835	8596	8596					-0.11679971047033177
ECFVLLSAL	9	Unmodified	_ECFVLLSAL_					0	0	0			REV__ENSG00000197943|ENST00000564138|PLCG2	REV__ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.766357421875	2	497.767529	993.520504	-0.27469	-0.00013673	-3.2981	-0.0016417	-3.5728	-0.0017784	497.76624653110906	14.05	0.3758	14.05	13.924	14.3	0					25	9	4	0	0	0	0.26904	1	3354	3354		53.351	10.877	1	788500	+		8436	17369	4808	4836	8597	8597					0.023484799653374466
ECGPFRKI	8	Unmodified	_ECGPFRKI_					0	0	0			REV__ENST00000534247.1_1_8:123875672-123963584:+|nuORF	REV__ENST00000534247.1_1_8:123875672-123963584:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2491760253906	2	475.249837	948.485122	-0.43324	-0.0002059	-0.28482	-0.00013536	-0.71806	-0.00034126	475.2496978382562	33.081	0.44498	33.081	32.737	33.182	0					28	12	3	0	0	0	0.60719	1	12113	12113		47.916	1.9636	1	493470	+		8437	18288	4809	4837	8598	8598					0.008818622281978605
ECGSACVKTC	10	Unmodified	_ECGSACVKTC_					0	0	0		MUC6|p.Q524Sfs*57|1|0.11|ENSG00000184956|chr11:1028667-1028667|G/-|frameshift_variant;MUC6|p.E825Rfs*6|1|0.47|ENSG00000184956|chr11:1026400-1026401|-/G|frameshift_variant;MUC6|p.E825Rfs*87|1|0.38|ENSG00000184956|chr11:1026401-1026401|G/-|frameshift_variant;MUC6|p.P1246Lfs*47|1|0.2|ENSG00000184956|chr11:1020161-1020161|G/-|frameshift_variant;MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant;ENSG00000184956|ENST00000421673|MUC6	MUC6|p.Q524Sfs*57|1|0.11|ENSG00000184956|chr11:1028667-1028667|G/-|frameshift_variant	MUC6|p.Q524Sfs*57|1|0.11|ENSG00000184956|chr11:1028667-1028667|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.69830322265625	2	500.698463	999.382373	1.1048	0.00055319	-2.2816	-0.0011424	-1.1768	-0.00058923	500.6977963160007	13.855	0.26051	13.855	13.749	14.01	0					11	5	3	0	0	0	0.19797	1	3326	3326		79.713	5.4575	1	788300			8438	7047	4810	4838	8599	8599					-0.11734334617085551
ECHTLLSCKV	10	Unmodified	_ECHTLLSCKV_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7781982421875	2	566.778102	1131.54165	1.9289	0.0010932	-1.2584	-0.00071325	0.67045	0.00038	566.7774100423021	40.332	0.60237	40.332	40.048	40.65	0					37	23	2	0	0	0	0.54197	1	15806	15806		40.778	1.972	1	117100			8439	5272	4811	4839	8600	8600					-0.018858779974380013
ECIEKLKKL	9	Unmodified	_ECIEKLKKL_					0	0	0			REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.5543212890625	3	368.554615	1102.64202	0.7645	0.00028176	-1.1167	-0.00041156	-0.35217	-0.00012979	368.5541983557702	30.432	0.25795	30.432	30.366	30.624	0					11	6	3	0	0	0	0.50858	1	10975	10975		31.53	2.3598	1	160370	+		8440	16891	4812	4840	8601	8601					0.09480102327870554
ECIKCGKFF	9	Unmodified	_ECIKCGKFF_					0	0	0		nc|ENSG00000189164|Q8NB42-2|ZNF527;ENSG00000189164|ENST00000436120|ZNF527	nc|ENSG00000189164|Q8NB42-2|ZNF527	nc|ENSG00000189164|Q8NB42-2|ZNF527	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7578125	2	537.759181	1073.50381	-0.31019	-0.00016681	0.0023927	1.2867E-06	-0.30779	-0.00016552	537.7591618830363	29.957	0.24626	29.957	29.877	30.123	0					22	9	4	0	0	0	0.48389	1	9855	9855		34.173	4.331	1	728870			8441	7306	4813	4841	8602	8602					-0.03000344192241755
ECISQSPTCYK	11	Unmodified	_ECISQSPTCYK_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	629.77783203125	2	629.775756	1257.53696	3.1316	0.0019722	-1.3461	-0.00084774	1.7855	0.0011245	629.7755067812126	47.117	0.37561	47.117	46.933	47.309	0					53	17	4	0	0	0	0.54316	1	18803	18803		41.08	4.6333	1	455080			8442	4986	4814	4842	8603	8603					-0.08150806930871113
ECKFPKKRC	9	Unmodified	_ECKFPKKRC_					0	0	0			REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF	REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7982177734375	2	569.796629	1137.5787	3.4349	0.0019572	-0.22828	-0.00013007	3.2066	0.0018271	569.7965922842995	33.932	0.29235	33.932	33.793	34.085	0					15	6	3	0	0	0	0.05357	1	12962	12962		94.006	3.2298	1	1306000	+		8443	15729	4815	4843	8604	8604					0.015418383389942392
ECKSGWRPG	9	Unmodified	_ECKSGWRPG_					0	0	0		ENST00000321599.8_2_3:49785261-49785576:-|nuORF	ENST00000321599.8_2_3:49785261-49785576:-|nuORF	ENST00000321599.8_2_3:49785261-49785576:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2413024902344	2	510.240001	1018.46545	3.0436	0.001553	0.35501	0.00018114	3.3986	0.0017341	510.23956485021836	17.333	0.35697	17.333	17.107	17.464	0					10	7	2	0	0	0	0.25109	1	4987	4987		55.504	0	1	477890			8444	8619	4816	4844	8605	8605					-0.04304513782551567
ECKVKDIIK	9	Unmodified	_ECKVKDIIK_					0	0	0		tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1	tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1	tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.3134765625	2	538.312635	1074.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.097	1	44.097	43.597	44.597	0								0	0	0	0.20989	1	16573	16573		49.536	6.6718	1				8445	22921	4817	4845	8606	8606					0.07639529293783198
ECLANQLTPL	10	Unmodified	_ECLANQLTPL_					0	0	0			REV__LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|16|3|sense	REV__LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|16|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2852172851562	2	551.284074	1100.5536	0.57422	0.00031656	0.5966	0.0003289	1.1708	0.00064546	551.2844909459017	28.078	0.25493	28.078	27.953	28.208	0					11	6	2	0	0	0	0.48255	1	9912	9912		42.864	0	1	177680	+		8446	20855	4818	4846	8607	8607					0.007340620173863499
ECLGECHF	8	Unmodified	_ECLGECHF_					0	0	0			REV__ENSG00000125965|ENST00000374369|GDF5	REV__ENSG00000125965|ENST00000374369|GDF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.18218994140625	2	469.180763	936.346973	2.5803	0.0012106	0.69512	0.00032614	3.2755	0.0015368	469.1810522310014	14.082	0.45624	14.082	13.783	14.239	0					19	9	3	0	0	0	0.8006	1	3434	3434		20.482	0	1	394020	+		8447	14452	4819	4847	8608	8608					-0.12374629082580668
ECLRCIEQS	9	Unmodified	_ECLRCIEQS_					0	0	0			REV__ACSF3|p.G87E|1|0.25|ENSG00000176715|chr16:89100941-89100941|G/A|missense_variant	REV__ACSF3|p.G87E|1|0.25|ENSG00000176715|chr16:89100941-89100941|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7438354492188	2	540.744259	1079.47396	0.27779	0.00015021	-0.94552	-0.00051128	-0.66773	-0.00036107	540.7437433682169	13.702	0.24657	13.702	13.613	13.859	0					11	6	2	0	0	0	0.1424	1	3182	3182		69.628	11.398	1	1759600	+		8448	12051	4820	4848	8609	8609					-0.06259327928250968
ECLRLCVL	8	Unmodified	_ECLRLCVL_					0	0	0		ENSG00000154099|ENST00000378553|DNAAF1;nc|ENSG00000154099|Q8NEP3-3|DNAAF1	ENSG00000154099|ENST00000378553|DNAAF1	ENSG00000154099|ENST00000378553|DNAAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7543640136719	2	474.753898	947.493244	-0.099994	-4.7473E-05	-0.95499	-0.00045339	-1.055	-0.00050086	474.7534373938956	37.319	0.27021	37.319	37.215	37.485	0					26	13	3	0	0	0	0.5676	1	13344	13344		53.351	2.016	1	177510			8449	5074	4821	4849	8610	8610					0.01739673153338117
ECLSSLGSVL	10	Unmodified	_ECLSSLGSVL_					0	0	0			REV__SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	REV__SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2613830566406	2	504.257525	1006.5005	2.9315	0.0014783	2.5009	0.0012611	5.4324	0.0027393	504.2581735875259	34.905	0.70729	34.905	34.606	35.313	0					26	14	4	0	0	0	0.30737	1	13436	13436		66.429	2.222	1	1507100	+		8450	16969	4822	4850	8611	8611					-0.0024931576524522825
ECLTEVIR	8	Unmodified	_ECLTEVIR_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7522277832031	2	481.75241	961.490267	0.081845	3.9429E-05	-0.02317	-1.1162E-05	0.058676	2.8267E-05	481.7525182503061	22.727	0.12846	22.727	22.684	22.812	0					7	4	2	0	0	0	0.63077	1	6473	6473		44.117	1.7207	1	48112			8451	5623	4823	4851	8612	8612					0.007981213001585274
ECNLVVVK	8	Unmodified	_ECNLVVVK_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2518310546875	2	452.252046	902.489538	-0.32824	-0.00014845	0.42935	0.00019417	0.10111	4.5728E-05	452.25159365876056	35.849	0.081612	35.849	35.815	35.897	0					6	4	2	0	0	0	0.66372	1	11753	11753		38.806	0	1	28004	+		8452	15399	4824	4852	8613	8613					0.0343932665111879
ECPRCARITA	10	Unmodified	_ECPRCARITA_					0	0	0		ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL;ENST00000487195.5_1_13:46917522-46924493:-|nuORF	ENST00000441284.5_2_13:46917522-46942212:-|nuORF	ENST00000441284.5_2_13:46917522-46942212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.275390625	2	560.273518	1118.53248	3.4696	0.0019439	-0.072023	-4.0353E-05	3.3976	0.0019036	560.2733712437122	22.715	0.41769	22.715	22.555	22.973	0					28	8	4	0	0	0	0.28036	1	7608	7608		69.628	8.6557	1	1252300			8453	2172	4825	4853	8614	8614					-0.022042265631171176
ECRITSNFVI	10	Unmodified	_ECRITSNFVI_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.53778076171875	3	394.537624	1180.59104	0.42392	0.00016725	-0.044861	-1.7699E-05	0.37906	0.00014955	394.53760168188535	37.293	0.41563	37.293	37.103	37.518	0					11	8	2	0	0	0	0.60076	1	14587	14587		31.634	1.0654	1	184330			8454	3862	4826	4854	8615	8615					0.007971532830197248
ECRKAFSQY	9	Unmodified	_ECRKAFSQY_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.2658081054688	2	566.266216	1130.51788	0.26822	0.00015188	-0.407	-0.00023047	-0.13878	-7.8586E-05	566.2659388341565	25.954	0.22406	25.954	25.818	26.042	0					8	4	2	0	0	0	0.40353	1	8903	8903		41.427	17.224	1	305560			8455	7562	4827	4855	8616	8616					-0.04215975439592512
ECSKSTVKN	9	Carbamidomethyl (C)	_EC(Carbamidomethyl (C))SKSTVKN_	EC(1)SKSTVKN		EC(67)SKSTVKN		0	1	0			REV__CHRDL1|p.V343Cfs*16|1|0.34|ENSG00000101938|chrX:110681587-110681587|C/-|frameshift_variant	REV__CHRDL1|p.V343Cfs*16|1|0.34|ENSG00000101938|chrX:110681587-110681587|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7542724609375	2	526.755681	1051.49681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.616	1	23.616	23.116	24.116	0								0	0	0	0.11736	1	8161	8161		67.494	16.158	1		+		8456	12491	4828	4856	8617	8617	490				-0.026879855391143792
ECVCAPFH	8	Unmodified	_ECVCAPFH_					0	0	0			REV__ENST00000472034.5_1_5:126112854-126140473:+|nuORF	REV__ENST00000472034.5_1_5:126112854-126140473:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.18499755859375	2	453.185849	904.357144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.868	1	13.868	13.368	14.368	0								0	0	0	1.7419	1	2912	2912		9.4706	1.2393	1		+		8457	19364	4829	4857	8618	8618					-0.09886021357351638
ECVQHVYSVI	10	Unmodified	_ECVQHVYSVI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.2894897460938	2	588.789524	1175.56449	1.3546	0.00079757	0.3344	0.00019689	1.689	0.00099446	588.7908475895541	42.128	0.47623	42.128	41.942	42.418	0					31	12	3	0	0	0	0.24329	1	16789	16789		52.937	16.49	1	335360	+		8458	15602	4830	4858	8619	8619					-0.016265356083295046
ECVQHVYSVI	10	Unmodified	_ECVQHVYSVI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7918701171875	2	588.789524	1175.56449	3.1863	0.0018761	0.20474	0.00012055	3.391	0.0019966	588.7898104466569	42.106	0.74924	42.106	41.872	42.621	0					52	20	5	0	0	0	0.39647	1	16751	16751		36.447	3.6343	1	829400	+		8459	15602	4830	4858	8620	8620					-0.016265356083295046
ECVVCLERE	9	Carbamidomethyl (C)	_ECVVC(Carbamidomethyl (C))LERE_	EC(0.161)VVC(0.839)LERE		EC(-7.2)VVC(7.2)LERE		0	1	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1;nc|ENSG00000148356|Q6UWE0-3|LRSAM1;ENST00000483302.5_1_9:130248105-130265175:+|nuORF	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.7598876953125	2	568.757366	1135.50018	0.12299	6.9954E-05	3.5963	0.0020454	3.7193	0.0021154	568.7597493089694	15.405	0.13664	15.405	15.314	15.45	0					5	3	2	0	0	0	0.21263	1	3980	3980		60.118	12.461	2	511020			8460	4824	4831	4859	8621	8621	200				-0.06215058756788494
ECYLLAAVA	9	Unmodified	_ECYLLAAVA_					0	0	0		ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.742431640625	2	476.744053	951.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.328	1	16.328	15.828	16.828	0								0	0	0	0.39567	1	3696	3696		12.207	2.0221	1				8461	6520	4832	4860	8622	8622					-0.004123795857935875
ECYMSPTDGP	10	Unmodified	_ECYMSPTDGP_					0	0	0			REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2068481445312	2	550.207175	1098.3998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.115	1	13.115	12.615	13.615	0								0	0	0	0.4201	1	3116	3116		20.947	3.582	1		+		8462	12079	4833	4861	8623	8623					-0.14546715810411115
EDAREEER	8	Unmodified	_EDAREEER_					0	0	0			REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2311401367188	2	517.230884	1032.44722	1.286	0.00066515	-1.0587	-0.00054759	0.22727	0.00011755	517.230385647423	17.263	0.17276	17.263	17.185	17.357	0					10	4	3	0	0	0	0.3049	1	4836	4836		82.241	22.122	1	405710	+		8463	19699	4834	4862	8624	8624					-0.06770977223573027
EDAREEER	8	Unmodified	_EDAREEER_					0	0	0			REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.23095703125	2	517.230884	1032.44722	0.95607	0.00049451	-0.95502	-0.00049396	0.0010489	5.4251E-07	517.2303786990198	17.225	0.1699	17.225	17.115	17.285	0					6	3	2	0	0	0	0.43813	1	5064	5064		66.429	25.003	1	228730	+		8464	19699	4834	4862	8625	8625					-0.06770977223573027
EDAREEER	8	Unmodified	_EDAREEER_					0	0	0			REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2313232421875	2	517.230884	1032.44722	0.21777	0.00011264	-0.02235	-1.156E-05	0.19542	0.00010108	517.2309069963082	17.205	0.2198	17.205	17.09	17.31	0					10	4	3	0	0	0	0.3961	1	4933	4933		71.296	16.531	1	199040	+		8465	19699	4834	4862	8626	8626					-0.06770977223573027
EDCYILDQG	9	Carbamidomethyl (C)	_EDC(Carbamidomethyl (C))YILDQG_	EDC(1)YILDQG		EDC(74)YILDQG		0	1	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000127831|P09327-2|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.7343139648438	2	556.731871	1111.44919	3.5187	0.001959	0.69366	0.00038618	4.2124	0.0023452	556.7322667274415	19.369	0.81294	19.369	19.063	19.876	0					27	16	2	0	0	0	0.1236	1	5989	5989		73.975	18.471	1	949720			8466	3517	4835	4863	8627	8627	148				-0.10207684529996186
EDDRWSYVSGR	11	Unmodified	_EDDRWSYVSGR_					0	0	0			REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF	REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	685.3085327148438	2	685.310197	1368.60584	-2.4533	-0.0016812	-0.17582	-0.00012049	-2.6291	-0.0018017	685.3101692439254	15.532	0.4151	15.532	15.399	15.814	0					36	15	4	0	0	0	0.30836	1	3485	3485		61.691	1.573	1	2563900	+		8467	13914	4836	4864	8628	8628					-0.0637168331529665
EDEIAKKL	8	Unmodified	_EDEIAKKL_					0	0	0			REV__ENST00000586934.5_1_19:5623180-5651054:+|nuORF	REV__ENST00000586934.5_1_19:5623180-5651054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2663879394531	2	473.266207	944.517862	-0.53227	-0.0002519	-0.082483	-3.9036E-05	-0.61475	-0.00029094	473.26638837504555	37.117	0.26131	37.117	36.996	37.257	0					12	7	3	0	0	0	0.46013	1	14029	14029		64.207	0	1	199550	+		8468	20488	4837	4865	8629	8629					0.04338347832049294
EDELAVHDTK	10	Unmodified	_EDELAVHDTK_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.77978515625	2	578.777667	1155.54078	3.2583	0.0018858	1.3907	0.00080491	4.649	0.0026907	578.7780199702096	22.68	1.5567	22.68	22.505	24.062	0					90	31	5	0	0	0	0.22198	1	7610	7610		76.774	2.5191	1	1051300	+		8469	12030	4838	4866	8630	8630					-0.030766778411361884
EDFSFAWL	8	Unmodified	_EDFSFAWL_					0	0	0			REV__LIPJ|p.F106L|1|0.39|ENSG00000204022|chr10:88594133-88594133|C/A|missense_variant	REV__LIPJ|p.F106L|1|0.39|ENSG00000204022|chr10:88594133-88594133|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2327575683594	2	507.732	1013.44945	0.088351	4.4859E-05	-0.53597	-0.00027213	-0.44762	-0.00022727	507.73179424821546	32.504	0.58536	32.504	32.314	32.9	0					32	17	2	0	0	0	0.65276	1	11271	11271		40.573	3.4135	1	109880	+		8470	20841	4839	4867	8631	8631					-0.05673896747816798
EDGINIQAEM	10	Unmodified	_EDGINIQAEM_					0	0	0			REV__tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	REV__tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.2550659179688	2	560.252971	1118.49139	3.4693	0.0019437	3.1852	0.0017845	6.6545	0.0037282	560.2532496360806	45.533	0.36278	45.533	45.387	45.75	0					22	13	2	0	0	0	0.536	1	18254	18254		41.427	6.2259	1	88456	+		8471	21694	4840	4868	8632	8632					-0.06311709121587228
EDGPETPESKV	11	Unmodified	_EDGPETPESKV_					0	0	0			REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4	REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.2752685546875	2	594.274958	1186.53536	0.25652	0.00015244	-0.68357	-0.00040623	-0.42705	-0.00025378	594.2745782286779	30.164	0.24742	30.164	30.076	30.324	0					15	6	3	0	0	0	0.1937	1	10839	10839		75.043	0	1	569390	+		8472	13447	4841	4869	8633	8633					-0.05044401423629097
EDGSQLVVKR	10	Unmodified	_EDGSQLVVKR_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.8119506835938	2	565.811845	1129.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.807	1	23.807	23.307	24.307	0								0	0	0	0.37602	1	7934	7934		37.812	6.2817	1				8473	1386	4842	4870	8634	8634					0.049516115293727125
EDHNGSGQGPP	11	Unmodified	_EDHNGSGQGPP_					0	0	0		ENST00000392811.6_1_7:150974307-150974490:-|nuORF	ENST00000392811.6_1_7:150974307-150974490:-|nuORF	ENST00000392811.6_1_7:150974307-150974490:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.3011474609375	2	547.728509	1093.44246	1.2342	0.00067602	-0.88264	-0.00048345	0.35159	0.00019258	547.727968967699	20.195	0.2177	20.195	20.092	20.31	0					16	7	3	0	0	0	0.75295	1	5330	5330		22.58	1.6327	1	153310			8474	9148	4843	4871	8635	8635					-0.10051861366309822
EDIAKYLR	8	Unmodified	_EDIAKYLR_					0	0	0		ENSG00000164609|ENST00000297151|SLU7;ENST00000520841.1_1_5:159833399-159835410:-|nuORF	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2829284667969	2	504.279649	1006.54475	2.931	0.0014781	2.6504	0.0013365	5.5814	0.0028146	504.2812837997705	11.495	0.14978	11.495	11.424	11.574	0					8	6	2	0	0	0	0.73426	1	2244	2244		29.15	4.9468	1	86996			8475	5708	4844	4872	8636	8636					0.041734564432204024
EDIFNILHK	9	Unmodified	_EDIFNILHK_					0	0	0			REV__tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	REV__tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.8056030273438	2	564.806031	1127.59751	0.34851	0.00019684	0.024714	1.3959E-05	0.37323	0.0002108	564.8062916677617	39.691	0.19726	39.691	39.573	39.771	0					14	8	2	0	0	0	0.4966	1	15092	15092		32.812	3.6424	1	66844	+		8476	21920	4845	4873	8637	8637					0.038814145060541705
EDIIRTAHK	9	Unmodified	_EDIIRTAHK_					0	0	0			REV__nc|ENSG00000112208|O95816-2|BAG2	REV__nc|ENSG00000112208|O95816-2|BAG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.5364990234375	3	361.536612	1081.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.771	1	13.771	13.271	14.271	0								0	0	0	0.3304	1	3209	3209		22.58	0	1		+		8477	13993	4846	4874	8638	8638					0.05047646220509705
EDIQTLAQIST	11	Unmodified	_EDIQTLAQIST_					0	0	0			REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.8792419433594	3	406.878592	1217.61395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.591	1	15.591	15.091	16.091	0								0	0	0	0.37035	1	3587	3587		42.338	9.5875	1		+		8478	12506	4847	4875	8639	8639					0.013844508814599976
EDKFFIEK	8	Unmodified	_EDKFFIEK_					0	0	0			REV__tr|U7T220|U7T220_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00437PE=4SV=1	REV__tr|U7T220|U7T220_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00437PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2725830078125	2	528.274032	1054.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.29	1	14.29	13.79	14.79	0								0	0	0	1.7419	1	3449	3449		39.253	2.0937	1		+		8479	22088	4848	4876	8640	8640					0.008426343491009902
EDKIFLIN	8	Unmodified	_EDKIFLIN_					0	0	0		nc|ENSG00000141524|Q7Z403-3|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENSG00000141524|ENST00000590602|TMC6	nc|ENSG00000141524|Q7Z403-3|TMC6	nc|ENSG00000141524|Q7Z403-3|TMC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2770080566406	2	496.276575	990.538597	0.96198	0.00047741	-1.7406	-0.0008638	-0.77858	-0.00038639	496.2756415926627	46.337	0.40953	46.337	46.111	46.521	0					32	18	2	0	0	0	0.5676	1	18480	18480		53.351	0	1	157580			8480	4454	4849	4877	8641	8641					0.04294938211705812
EDKKSVEDL	9	Unmodified	_EDKKSVEDL_					0	0	0			REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7694091796875	2	531.769311	1061.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.908	1	37.908	37.408	38.408	0								0	0	0	0.018211	1	14860	14860		101.6	0	1		+		8481	21682	4850	4878	8642	8642					-0.004231787270782661
EDKTISYQ	8	Unmodified	_EDKTISYQ_					0	0	0		MYO10|p.D302Y|1|0.3|ENSG00000145555|chr5:16779571-16779571|C/A|missense_variant	MYO10|p.D302Y|1|0.3|ENSG00000145555|chr5:16779571-16779571|C/A|missense_variant	MYO10|p.D302Y|1|0.3|ENSG00000145555|chr5:16779571-16779571|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2371520996094	2	492.237647	982.460741	0.58718	0.00028903	-0.12371	-6.0897E-05	0.46347	0.00022814	492.23744010498154	33.15	0.39634	33.15	33.052	33.448	0					21	9	3	0	0	0	0.5535	1	12652	12652		54.776	0.01164	1	1594500			8482	11395	4851	4879	8643	8643					-0.03119119444329499
EDKTISYQ	8	Unmodified	_EDKTISYQ_					0	0	0		MYO10|p.D302Y|1|0.3|ENSG00000145555|chr5:16779571-16779571|C/A|missense_variant	MYO10|p.D302Y|1|0.3|ENSG00000145555|chr5:16779571-16779571|C/A|missense_variant	MYO10|p.D302Y|1|0.3|ENSG00000145555|chr5:16779571-16779571|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2383728027344	2	492.237647	982.460741	0.83588	0.00041145	0.0095858	4.7185E-06	0.84546	0.00041617	492.23799240223366	33.099	0.4455	33.099	33.004	33.449	0					21	9	3	0	0	0	0.5535	1	12537	12537		54.776	0	1	2934900			8483	11395	4851	4879	8644	8644					-0.03119119444329499
EDLEVFLST	9	Unmodified	_EDLEVFLST_					0	0	0			REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7614135742188	2	526.760955	1051.50736	1.3146	0.00069249	-1.3188	-0.0006947	-0.0042005	-2.2127E-06	526.7602804666554	21.126	0.61294	21.126	20.832	21.445	0					31	18	2	0	0	0	0.41354	1	5740	5740		40.573	4.1259	1	238790	+		8484	13506	4852	4880	8645	8645					-0.016336796130417497
EDLHNQIF	8	Unmodified	_EDLHNQIF_					0	0	0			REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2460021972656	2	508.245806	1014.47706	0.89714	0.00045597	-0.89024	-0.00045246	0.0069077	3.5108E-06	508.2453837105604	28.387	0.20742	28.387	28.291	28.498	0					10	5	2	0	0	0	0.63077	1	10032	10032		44.117	6.9577	1	387630	+		8485	12729	4853	4881	8646	8646					-0.029599934875705003
EDLHRQAKL	9	Unmodified	_EDLHRQAKL_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1;ENST00000479393.2_1_6:138791728-138820433:-|nuORF;ENST00000426841.6_1_6:138768126-138820433:-|nuORF	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.3056640625	2	555.306729	1108.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.617	1	39.617	39.117	40.117	0								0	0	0	0.23111	1	14115	14115		47.657	3.5405	1				8486	4000	4854	4882	8647	8647					0.048950485947898414
EDLIFYKLS	9	Unmodified	_EDLIFYKLS_					0	0	0			REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.5376281738281	3	376.537619	1126.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.977	1	33.977	33.477	34.477	0								0	0	0	0.32356	1	12617	12617		30.318	1.1477	1		+		8487	21751	4855	4883	8648	8648					0.032794765546668714
EDLKIVKEKN	10	Unmodified	_EDLKIVKEKN_					0	0	0		ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26	ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.3505859375	2	608.350803	1214.68705	-0.6204	-0.00037742	1.6812	0.0010227	1.0608	0.00064532	608.3516952169646	38.988	0.08828	38.988	38.916	39.005	0					5	3	2	0	0	0	0.50287	1	14831	14831		45.022	0	1	49107			8488	156	4856	4884	8649	8649					0.08829624394775237
EDLRATMR	8	Unmodified	_EDLRATMR_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2746276855469	2	496.253108	990.491664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.803	1	20.803	20.303	21.303	0								0	0	0	1.7419	1	5871	5871		39.253	0.49923	1				8489	6458	4857	4885	8650	8650					-0.003962446110790552
EDLRSHAW	8	Unmodified	_EDLRSHAW_					0	0	0		ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2427978515625	2	507.243598	1012.47264	0.8394	0.00042578	-1.698	-0.00086129	-0.85858	-0.00043551	507.24284755016066	22.275	0.11512	22.275	22.214	22.329	0					6	3	2	0	0	0	0.71588	1	6270	6270		29.15	0	1	43096			8490	4208	4858	4886	8651	8651					-0.033094579104840705
EDLVARVF	8	Unmodified	_EDLVARVF_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;ENST00000465525.6_1_1:29647190-29652170:+|nuORF;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU;TRNAU1AP-PTPRU|3|fusion	TRNAU1AP-PTPRU|3|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7604064941406	2	474.761092	947.507631	-1.5806	-0.0007504	0.0024396	1.1582E-06	-1.5781	-0.00074924	474.7613597780848	35.029	0.19194	35.029	34.914	35.106	0					15	8	3	0	0	0	0.59411	1	11818	11818		50.025	2.3672	1	107940			8491	1319;23068	4859	4887	8652	8652					0.03177784897479796
EDNNLWAI	8	Unmodified	_EDNNLWAI_					0	0	0		ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENST00000404612.1_1_6:26322106-26322214:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.73272705078125	2	487.732532	973.45051	0.7325	0.00035727	-0.79077	-0.00038569	-0.058269	-2.842E-05	487.73213682136526	43.107	0.1976	43.107	43.027	43.225	0					18	10	2	0	0	0	0.66372	1	16275	16275		38.806	3.1879	1	110750			8492	9271	4860	4888	8653	8653					-0.03727682378917052
EDNQKYVP	8	Unmodified	_EDNQKYVP_					0	0	0		tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7360534667969	2	496.737814	991.461075	-1.1769	-0.00058462	-2.5611	-0.0012722	-3.738	-0.0018568	496.7366822181801	15.239	0.11825	15.239	15.202	15.321	0					5	3	2	0	0	0	0.77246	1	3463	3463		24.203	1.1603	1	104130			8493	22740	4861	4889	8654	8654					-0.03499699724477523
EDQHKIQIA	9	Unmodified	_EDQHKIQIA_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2860107421875	2	541.285463	1080.55637	0.29014	0.00015705	0.96104	0.0005202	1.2512	0.00067724	541.2859935565123	17.181	0.217	17.181	17.045	17.262	0					12	5	3	0	0	0	0.27123	1	4810	4810		45.972	0	1	358240	+		8494	13608	4862	4890	8655	8655					0.019316534665676954
EDRLKEDQ	8	Unmodified	_EDRLKEDQ_					0	0	0			REV__ENSG00000124251|ENST00000372726|TP53TG5	REV__ENSG00000124251|ENST00000372726|TP53TG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7506103515625	2	516.751453	1031.48835	-0.50572	-0.00026133	-0.59373	-0.00030681	-1.0995	-0.00056814	516.7510964097168	46.303	0.13255	46.303	46.236	46.368	0					11	7	2	0	0	0	0.78978	1	17810	17810		21.96	1.013	1	95437	+		8495	14386	4863	4891	8656	8656					-0.02613216184090561
EDRRPTLGPG	10	Unmodified	_EDRRPTLGPG_					0	0	0		ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.7887573242188	2	549.288537	1096.56252	-1.4901	-0.00081852	-0.67415	-0.00037031	-2.1643	-0.0011888	549.7896525548477	34.277	0.13196	34.277	34.188	34.32	0					6	4	2	0	0	0	0.61187	1	12127	12127		32.812	2.4947	1	59563			8496	8572	4864	4892	8657	8657					0.018101716980936544
EDRVLFGL	8	Unmodified	_EDRVLFGL_					0	0	0			REV__nc|ENSG00000105483|Q9Y2G2-2|CARD8	REV__nc|ENSG00000105483|Q9Y2G2-2|CARD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.76092529296875	2	474.761092	947.507631	0.61486	0.00029191	-2.0162	-0.00095719	-1.4013	-0.00066528	474.76053131991284	35.229	0.29409	35.229	35.064	35.359	0					16	8	3	0	0	0	0.5676	1	13642	13642		53.351	3.9099	1	654080	+		8497	13778	4865	4893	8658	8658					0.03177784897491165
EDSDREEKIY	10	Unmodified	_EDSDREEKIY_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	642.290283203125	2	642.291139	1282.56773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.93	1	15.93	15.43	16.43	0								0	0	0	0.4201	1	4218	4218		23.523	2.5758	1		+		8498	17188	4866	4894	8659	8659					-0.06225614020604553
EDSGRGVQIQ	10	Unmodified	_EDSGRGVQIQ_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7726440429688	2	544.770177	1087.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.581	1	20.581	20.081	21.081	0								0	0	0	0.36846	1	6692	6692		40.058	2.2467	1				8499	6309	4867	4895	8660	8660					-0.014461249184705594
EDSGSDPEDTY	11	Unmodified	_EDSGSDPEDTY_					0	0	0		nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1;ENST00000599322.5_1_19:48618908-48621044:-|nuORF	nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-3|LIG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.7208251953125	2	607.720212	1213.42587	0.79693	0.00048431	-0.34693	-0.00021084	0.45	0.00027347	607.7201253914604	27.313	0.2188	27.313	27.254	27.473	0					9	4	3	0	0	0	0.42875	1	9896	9896		49.442	1.482	1	493230			8500	2363	4868	4896	8661	8661					-0.17230451833597726
EDSKLGLGKI	10	Unmodified	_EDSKLGLGKI_					0	0	0			REV__ENSG00000242110|ENST00000335606|AMACR	REV__ENSG00000242110|ENST00000335606|AMACR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.30615234375	2	530.305864	1058.59717	1.7299	0.00091739	-0.78582	-0.00041672	0.94411	0.00050066	530.3053764560788	25.877	0.29657	25.877	25.738	26.034	0					9	4	3	0	0	0	0.27065	1	9208	9208		70.816	6.6089	1	1275000	+		8501	17694	4869	4897	8662	8662					0.07021994786191499
EDSNVLDDDE	10	Unmodified	_EDSNVLDDDE_					0	0	0			REV__nc|ENSG00000119787|Q8NHH9-5|ATL2	REV__nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.7266845703125	2	575.722755	1149.43096	1.8585	0.00107	3.7003	0.0021304	5.5588	0.0032003	575.7249991788071	37.98	0.17934	37.98	37.902	38.081	0					10	6	2	0	0	0	0.54197	1	14892	14892		40.778	0	1	66495	+		8502	14259	4870	4898	8663	8663					-0.13778147970970167
EDSRRSSLP	9	Unmodified	_EDSRRSSLP_					0	0	0		ENSG00000215595|ENST00000400633|C20orf202	ENSG00000215595|ENST00000400633|C20orf202	ENSG00000215595|ENST00000400633|C20orf202	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7637329101562	2	523.764894	1045.51524	0.49025	0.00025678	-2.706	-0.0014173	-2.2158	-0.0011605	523.7634201566751	29.956	0.46574	29.956	29.748	30.214	0					14	9	2	0	0	0	0.45358	1	11072	11072		37.159	2.9866	1	478980			8503	7834	4871	4899	8664	8664					-0.0057010757288935565
EDSVSQQSATD	11	Unmodified	_EDSVSQQSATD_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.7423706054688	2	583.744022	1165.47349	0.0092999	5.4287E-06	-2.4867	-0.0014516	-2.4774	-0.0014462	583.7425136874659	13.414	0.18671	13.414	13.33	13.516	0					7	5	2	0	0	0	0.59204	1	3052	3052		37.508	5.9784	1	659460	+		8504	14818	4872	4900	8665	8665					-0.10262752842754708
EDSYDGCDNH	10	Unmodified	_EDSYDGCDNH_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.6878662109375	2	577.688192	1153.36183	-0.068272	-3.944E-05	0.21827	0.00012609	0.14999	8.665E-05	577.6882169450178	12.469	0.19767	12.469	12.406	12.603	0					13	6	3	0	0	0	0.74091	1	2625	2625		14.865	3.9993	1	671990	+		8505	13307	4873	4901	8666	8666					-0.20871510471556576
EDTERVLA	8	Unmodified	_EDTERVLA_					0	0	0			REV__ENSG00000206181|ENST00000332567|ELOA2	REV__ENSG00000206181|ENST00000332567|ELOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7371826171875	2	466.737814	931.461075	-0.66351	-0.00030969	-1.2091	-0.00056432	-1.8726	-0.00087401	466.73708812505384	44.519	0.13423	44.519	44.469	44.603	0					10	8	2	0	0	0	0.69548	1	16681	16681		34.173	1.3601	1	51492	+		8506	17541	4874	4902	8667	8667					-0.007396997244654813
EDTFRQSP	8	Unmodified	_EDTFRQSP_					0	0	0		nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2262878417969	2	490.227613	978.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.819	1	27.819	27.319	28.319	0								0	0	0	1.7419	1	10123	10123		25.45	3.4903	1				8507	4975	4875	4903	8668	8668					-0.049408703842800605
EDTIAKVKGL	10	Unmodified	_EDTIAKVKGL_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.5455017089844	3	358.544885	1072.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.005	1	24.005	23.505	24.505	0								0	0	0	0.38475	1	7417	7417		35.152	4.8343	1				8508	5583	4876	4904	8669	8669					0.07942281303257914
EDTLEELGGA	10	Unmodified	_EDTLEELGGA_					0	0	0			REV__ENSG00000175602|ENST00000312579|CCDC85B	REV__ENSG00000175602|ENST00000312579|CCDC85B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2384033203125	2	517.237844	1032.46113	0.036931	1.9102E-05	1.2318	0.00063714	1.2687	0.00065624	517.2386177334507	21.117	0.82559	21.117	20.965	21.791	0					52	25	4	0	0	0	0.61187	1	6160	6160		32.812	2.3088	1	413310	+		8509	16625	4877	4905	8670	8670					-0.05379744515107632
EDTSWDFG	8	Unmodified	_EDTSWDFG_					0	0	0		WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant;ENSG00000165392|ENST00000298139|WRN	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.685302734375	2	478.685247	955.355941	-0.11596	-5.551E-05	-1.008	-0.00048253	-1.124	-0.00053804	478.6850762873172	20.587	1.4173	20.587	19.38	20.798	0					63	28	3	0	0	0	0.8006	1	6518	6518		20.482	0	1	434980			8510	5791	4878	4906	8671	8671					-0.1235224092089311
EDTVIPPES	9	Unmodified	_EDTVIPPES_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.73785400390625	2	493.73748	985.460406	0.76809	0.00037924	-0.043869	-2.166E-05	0.72423	0.00035758	493.7374317521217	25.249	0.31767	25.249	25.148	25.466	0					18	7	3	0	0	0	0.20551	1	8589	8589		60.972	2.19	1	2666000	+		8511	13088	4879	4907	8672	8672					-0.03290539164174788
EDTYTQKLSV	10	Unmodified	_EDTYTQKLSV_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.2977905273438	2	592.295693	1182.57683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.549	1	14.549	14.049	15.049	0								0	0	0	0.40063	1	3169	3169		30.318	2.4355	1				8512	5739	4880	4908	8673	8673					-0.007152206643013415
EDVDYVQTF	9	Unmodified	_EDVDYVQTF_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2493286132812	2	558.248212	1114.48187	1.8252	0.0010189	-0.11725	-6.5455E-05	1.708	0.00095346	558.2479949174129	33.541	3.4458	33.541	33.332	36.778	0					179	70	3	0	0	0	0.39215	1	13142	13142		42.396	1.618	1	25614000			8513	2063	4881	4909	8674	8674					-0.07079154135476529
EDVKMITSL	9	Unmodified	_EDVKMITSL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2733764648438	2	518.273175	1034.5318	1.5725	0.00081498	-1.1264	-0.00058381	0.44604	0.00023117	518.2724955775483	41.068	0.15991	41.068	40.976	41.136	0					13	6	3	0	0	0	0.12239	1	16156	16156		74.255	13.283	1	150730			8514	1509	4882	4910	8675	8675					0.015912572688193904
EDVKMITSL	9	Unmodified	_EDVKMITSL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2730102539062	2	518.273175	1034.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.048	1	41.048	40.548	41.548	0								0	0	0	0.029117	1	16301	16301		96.19	24.895	1				8515	1509	4882	4910	8676	8676					0.015912572688193904
EDVQNNVQY	9	Unmodified	_EDVQNNVQY_					0	0	0		tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7482299804688	2	554.74891	1107.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.554	1	35.554	35.054	36.054	0								0	0	0	0.30504	1	12673	12673		34.173	1.3601	1				8516	22758	4883	4911	8677	8677					-0.06617520046711434
EDVSGNRPQ	9	Unmodified	_EDVSGNRPQ_					0	0	0			REV__SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	REV__SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.23773193359375	2	501.23597	1000.45739	0.93491	0.00046861	2.1544	0.0010798	3.0893	0.0015485	501.23718018139664	27.037	0.50952	27.037	26.761	27.27	0					19	10	3	0	0	0	0.15163	1	9752	9752		67.494	8.7117	1	377740	+		8517	15648	4884	4912	8678	8678					-0.04282369498321259
EDWELMRP	8	Unmodified	_EDWELMRP_					0	0	0		ENSG00000141040|ENST00000395825|ZNF287	ENSG00000141040|ENST00000395825|ZNF287	ENSG00000141040|ENST00000395825|ZNF287	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2464599609375	2	538.247492	1074.48043	0.29771	0.00016024	-2.2462	-0.001209	-1.9485	-0.0010488	538.2462792024378	17.879	0.21933	17.879	17.768	17.988	0					6	4	2	0	0	0	0.61938	1	5398	5398		45.952	8.1404	1	624160			8518	4424	4885	4913	8679	8679					-0.053830667052125136
EEAARKTAA	9	Unmodified	_EEAARKTAA_					0	0	0			REV__ENSG00000100023|ENST00000398831|PPIL2	REV__ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.75103759765625	2	473.751256	945.487959	0.69407	0.00032881	-0.9086	-0.00043045	-0.21453	-0.00010164	473.75088669291944	15.957	0.098595	15.957	15.909	16.007	0					4	2	2	0	0	0	0.50858	1	4240	4240		31.53	1.2121	1	80201	+		8519	13508	4886	4914	8680	8680					0.01303408886701618
EEAAVAIKAM	10	Unmodified	_EEAAVAIKAM_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7736206054688	2	516.773342	1031.53213	1.4844	0.00076712	4.386	0.0022666	5.8705	0.0030337	516.7758284845362	32.796	0.34076	32.796	32.679	33.02	0					14	8	2	0	0	0	0.12896	1	12489	12489		90.37	8.0648	1	831110			8520	3793	4887	4915	8681	8681					0.017626769886646798
EEACDMVL	8	Unmodified	_EEACDMVL_					0	0	0		PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant	PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant	PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.1883850097656	2	455.188254	908.361955	-0.58016	-0.00026408	0.55415	0.00025224	-0.026012	-1.184E-05	455.18851861274686	16.817	0.21239	16.817	16.728	16.94	0					18	5	4	0	0	0	0.64096	1	4622	4622		42.474	1.9018	1	3802100			8521	11976	4888	4916	8682	8682					-0.09589182005242947
EEAEAVSGAGR	11	Unmodified	_EEAEAVSGAGR_					0	0	0			REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.25439453125	2	538.25436	1074.49417	-0.26544	-0.00014288	0.97403	0.00052428	0.70859	0.0003814	538.2549521788006	16.969	0.061789	16.969	16.939	17.001	0					4	2	2	0	0	0	0.59078	1	4168	4168		42.864	7.246	1	51880	+		8522	19062	4889	4917	8683	8683					-0.04010117672441993
EEAEGLAAAL	10	Unmodified	_EEAEGLAAAL_					0	0	0		ZXDA|p.G678Wfs*16|1|0.83|ENSG00000198205|chrX:57908389-57908390|-/A|frameshift_variant;ZXDA|p.F774Sfs*19|1|0.34|ENSG00000198205|chrX:57908100-57908100|A/-|frameshift_variant;ENSG00000198205|ENST00000358697|ZXDA	ZXDA|p.G678Wfs*16|1|0.83|ENSG00000198205|chrX:57908389-57908390|-/A|frameshift_variant	ZXDA|p.G678Wfs*16|1|0.83|ENSG00000198205|chrX:57908389-57908390|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2449035644531	2	487.245472	972.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.406	1	40.406	39.906	40.906	0								0	0	0	0.3428	1	14360	14360		44.117	3.3386	1				8523	7540	4890	4918	8684	8684					-0.010948329272878254
EEAEQLALK	9	Unmodified	_EEAEQLALK_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.288330078125	2	515.774396	1029.53424	0.74186	0.00038263	-0.91659	-0.00047275	-0.17473	-9.0122E-05	515.7738805853954	28.468	0.17142	28.468	28.363	28.534	0					7	4	2	0	0	0	0.2873	1	9438	9438		51.335	1.8939	1	84210			8524	11408	4891	4919	8685	8685					0.020654289981166585
EEAERKKAR	9	Unmodified	_EEAERKKAR_					0	0	0			REV__nc|ENSG00000164898|Q96HJ9-2|FMC1;REV__nc|ENSG00000269955|Q9Y383-2|LUC7L2	REV__nc|ENSG00000269955|Q9Y383-2|LUC7L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8114624023438	2	558.809636	1115.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.851	1	13.851	13.351	14.351	0								0	0	0	0.19749	1	3314	3314		51.335	3.6781	1		+		8525	21099;21249	4892	4920	8686	8686					0.051541471064638245
EEAFGLLPF	9	Unmodified	_EEAFGLLPF_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.76531982421875	2	511.7633	1021.51205	-1.7372	-0.00088904	2.1218	0.0010858	0.38456	0.0001968	511.76477045988565	30.861	0.20429	30.861	30.786	30.99	0					9	5	2	0	0	0	0.27781	1	10549	10549		52.299	9.8247	1	154040			8526	6734	4893	4921	8687	8687					0.0021524932038801126
EEAGGRPAM	9	Unmodified	_EEAGGRPAM_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2105712890625	2	459.210909	916.407265	0.16254	7.4641E-05	-1.1761	-0.00054009	-1.0136	-0.00046544	459.21046586256267	19.845	0.10785	19.845	19.795	19.903	0					6	2	3	0	0	0	0.027316	1	6069	6069		111.65	67.117	1	195770			8527	5043	4894	4922	8688	8688					-0.05428195427839455
EEAGGRPAM	9	Unmodified	_EEAGGRPAM_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2110290527344	2	459.210909	916.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.588	1	19.588	19.088	20.088	0								0	0	0	0.12457	1	5332	5332		65.803	19.851	1				8528	5043	4894	4922	8689	8689					-0.05428195427839455
EEAGGRPAM	9	Unmodified	_EEAGGRPAM_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.21063232421875	2	459.210909	916.407265	-0.15647	-7.1852E-05	-0.79955	-0.00036716	-0.95602	-0.00043901	459.2106228929438	19.733	0.21725	19.733	19.625	19.843	0					8	4	3	0	0	0	0.011305	1	6300	6300		138.24	85.943	1	271150			8529	5043	4894	4922	8690	8690					-0.05428195427839455
EEAHKKERK	9	Unmodified	_EEAHKKERK_					0	0	0		HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3;HIVEP3|p.P534Lfs*5|2|0.22|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant;HIVEP3|p.H554Tfs*20|1|0.25|ENSG00000127124|chr1:41583138-41583138|G/-|frameshift_variant	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.8197021484375	2	577.817461	1153.62037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.204	1	30.204	29.704	30.704	0								0	0	0	0.36359	1	9599	9599		14.865	0.72775	1				8530	3499	4895	4923	8691	8691					0.04970433623498138
EEAKAEKKR	9	Unmodified	_EEAKAEKKR_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.8076782226562	2	544.806562	1087.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.431	1	23.431	22.931	23.931	0								0	0	0	0.27521	1	6782	6782		32.812	4.7309	1		+		8531	14349	4896	4924	8692	8692					0.05827628874953916
EEAKNYYK	8	Unmodified	_EEAKNYYK_					0	0	0		SPG20|p.T655Rfs*4|1|0.63|ENSG00000133104|chr13:36304402-36304402|G/-|frameshift_variant;ENSG00000133104|ENST00000438666|SPART;SPG20|p.Q38K|1|0.05|ENSG00000133104|chr13:36335719-36335719|G/T|missense_variant;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	SPG20|p.T655Rfs*4|1|0.63|ENSG00000133104|chr13:36304402-36304402|G/-|frameshift_variant	SPG20|p.T655Rfs*4|1|0.63|ENSG00000133104|chr13:36304402-36304402|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7537231445312	2	522.753464	1043.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.882	1	34.882	34.382	35.382	0								0	0	0	1.7419	1	13033	13033		55.504	0.72789	1				8532	3837	4897	4925	8693	8693					-0.027631266904108998
EEAKRGRGR	9	Unmodified	_EEAKRGRGR_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7958984375	2	529.794321	1057.57409	3.4449	0.0018251	-0.56599	-0.00029986	2.8789	0.0015252	529.7939687772325	24.204	0.36744	24.204	23.996	24.364	0					19	7	4	0	0	0	0.25716	1	8330	8330		54.776	4.7518	1	2267300	+		8533	14468	4898	4926	8694	8694					0.047604135120991486
EEAPRPALLN	10	Unmodified	_EEAPRPALLN_					0	0	0		ENST00000539695.5_1_12:121600150-121613220:+|nuORF;nc|ENSG00000089041|Q99572-7|P2RX7;nc|ENSG00000089041|Q99572-5|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-2|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF;ENSG00000089041|ENST00000328963|P2RX7	ENST00000539695.5_1_12:121600150-121613220:+|nuORF	ENST00000539695.5_1_12:121600150-121613220:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.301025390625	2	555.301113	1108.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.923	1	32.923	32.423	33.423	0								0	0	0	0.40862	1	12554	12554		27.882	1.0861	1				8534	1795	4899	4927	8695	8695					0.03772226500677789
EEAPSRPAL	9	Unmodified	_EEAPSRPAL_					0	0	0		nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.25433349609375	2	485.253631	968.49271	0.34652	0.00016815	0.33004	0.00016016	0.67656	0.0003283	485.25392177871976	26.387	0.22246	26.387	26.218	26.44	0					8	5	2	0	0	0	0.35021	1	9066	9066		45.972	6.7194	1	92552			8535	11649	4900	4928	8696	8696					0.007202930294738508
EEAQALAI	8	Unmodified	_EEAQALAI_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.72406005859375	2	422.724175	843.433798	-0.34465	-0.00014569	0.0034371	1.453E-06	-0.34122	-0.00014424	422.7241261812889	40.679	0.41713	40.679	40.407	40.825	0					18	8	3	0	0	0	0.29152	1	16101	16101		85.359	3.0545	1	359920			8536	6369	4901	4929	8697	8697					0.005818167351208103
EEARLRKLRKK	11	Unmodified	_EEARLRKLRKK_					0	0	0		ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	713.9490356445312	2	713.951884	1425.88921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.74	1	42.74	42.24	43.24	0								0	0	0	0.45674	1	16169	16169		12.812	3.6288	1				8537	6479	4902	4930	8698	8698					0.193305725907976
EEAVKGAPV	9	Unmodified	_EEAVKGAPV_					0	0	0			REV__ENSG00000143458|ENST00000368918|GABPB2	REV__ENSG00000143458|ENST00000368918|GABPB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2451171875	2	450.245275	898.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.554	1	37.554	37.054	38.054	0								0	0	0	0.15451	1	14698	14698		58.782	5.4305	1		+		8538	15195	4903	4931	8699	8699					0.02269792143522409
EEAVKKML	8	Unmodified	_EEAVKKML_					0	0	0		TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP	TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant	TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2635192871094	2	474.265153	946.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.179	1	23.179	22.679	23.679	0								0	0	0	1.7419	1	7031	7031		40.573	1.7665	1				8539	5936	4904	4932	8700	8700					0.040355958225973154
EEAVLEEKV	9	Unmodified	_EEAVLEEKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2754516601562	2	523.274229	1044.53391	0.48589	0.00025426	0.29049	0.00015201	0.77638	0.00040626	523.2743297472679	36.052	0.50703	36.052	35.859	36.366	0					93	23	6	0	0	0	0.30951	1	12162	12162		49.442	3.4896	1	7875000			8540	5134	4905	4933	8701	8701					0.013420092782780557
EEAWFRVVCAR	11	Carbamidomethyl (C)	_EEAWFRVVC(Carbamidomethyl (C))AR_	EEAWFRVVC(1)AR		EEAWFRVVC(53)AR		0	1	0			REV__ENSG00000168159|ENST00000305943|RNF187	REV__ENSG00000168159|ENST00000305943|RNF187	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	711.84912109375	2	711.850978	1421.6874	-3.0333	-0.0021593	0.30187	0.00021489	-2.7314	-0.0019444	711.8513158487883	30.912	0.17762	30.912	30.822	30.999	0					9	4	3	0	0	0	0.3865	1	11202	11202		52.937	8.5595	1	658650	+		8541	16245	4906	4934	8702	8702	578				-0.0065727915703064355
EEAYNKLNQC	10	Unmodified	_EEAYNKLNQC_					0	0	0		ENSG00000213973|ENST00000596209|ZNF99	ENSG00000213973|ENST00000596209|ZNF99	ENSG00000213973|ENST00000596209|ZNF99	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	606.774658203125	2	606.271695	1210.52884	-0.60715	-0.0003681	3.1278	0.0018963	2.5206	0.0015282	606.7751703563564	18.656	0.12486	18.656	18.588	18.713	0					10	4	3	0	0	0	0.62149	1	4919	4919		26.693	0	1	180840			8542	7802	4907	4935	8703	8703					-0.06800617855992641
EECDKAFYRFS	11	Unmodified	_EECDKAFYRFS_					0	0	0		ZNF100|p.G379D|1|0.04|ENSG00000197020|chr19:21727176-21727176|C/T|missense_variant	ZNF100|p.G379D|1|0.04|ENSG00000197020|chr19:21727176-21727176|C/T|missense_variant	ZNF100|p.G379D|1|0.04|ENSG00000197020|chr19:21727176-21727176|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	697.8055419921875	2	697.805902	1393.59725	-0.8569	-0.00059795	1.0196	0.00071147	0.16268	0.00011352	697.8065681533321	16.805	0.25661	16.805	16.744	17.001	0					16	10	3	0	0	0	0.64626	1	4088	4088		32.751	3.5805	1	834100			8543	23143	4908	4936	8704	8704					-0.08380373276145292
EECMLAVD	8	Unmodified	_EECMLAVD_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.1885681152344	2	455.188254	908.361955	-0.3681	-0.00016755	0.50101	0.00022805	0.13291	6.05E-05	455.1884799984104	16.535	0.16792	16.535	16.437	16.605	0					12	5	3	0	0	0	0.66372	1	3770	3770		38.806	0	1	262740			8544	3560	4909	4937	8705	8705					-0.09589182005242947
EECVEQDPGQ	10	Unmodified	_EECVEQDPGQ_					0	0	0		ENST00000439351.5_2_3:186288616-186289895:+|nuORF	ENST00000439351.5_2_3:186288616-186289895:+|nuORF	ENST00000439351.5_2_3:186288616-186289895:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7770385742188	2	567.22441	1132.43427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.607	1	30.607	30.107	31.107	0								0	0	0	0.40063	1	11458	11458		30.318	2.2362	1				8545	9560	4910	4938	8706	8706					-0.12665176397968025
EEDDEGYQAY	10	Unmodified	_EEDDEGYQAY_					0	0	0			REV__ENSG00000108819|ENST00000612501|PPP1R9B	REV__ENSG00000108819|ENST00000612501|PPP1R9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.7261962890625	2	609.725298	1217.43604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.074	1	27.074	26.574	27.574	0								0	0	0	0.4201	1	9768	9768		15.642	2.1878	1		+		8546	13886	4911	4939	8707	8707					-0.16397844108360005
EEDDNICPQ	9	Unmodified	_EEDDNICPQ_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.730224609375	2	531.705854	1061.39715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.685	1	16.685	16.185	17.185	0								0	0	0	0.35899	1	4816	4816		23.042	3.6825	1		+		8547	12995	4912	4940	8708	8708					-0.13108847943749424
EEDERNSRL	9	Unmodified	_EEDERNSRL_					0	0	0			REV__ENST00000530485.1_1_1:32849551-32859717:-|nuORF	REV__ENST00000530485.1_1_1:32849551-32859717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.1923828125	3	383.182786	1146.52653	0.34543	0.00013236	-1.2164	-0.00046612	-0.87102	-0.00033376	383.1824804503801	24.753	0.21229	24.753	24.645	24.857	0					13	4	4	0	0	0	0.51817	1	8668	8668		23.523	0	1	335990	+		8548	20048	4913	4941	8709	8709					-0.04087330269430822
EEDGGAGAKPL	11	Unmodified	_EEDGGAGAKPL_					0	0	0		DPP6|p.I184Nfs*2|2|0.4|ENSG00000130226|chr7:154540617-154540618|-/A|frameshift_variant;ENSG00000130226|ENST00000377770|DPP6	DPP6|p.I184Nfs*2|2|0.4|ENSG00000130226|chr7:154540617-154540618|-/A|frameshift_variant	DPP6|p.I184Nfs*2|2|0.4|ENSG00000130226|chr7:154540617-154540618|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2567138671875	2	522.253828	1042.4931	0.39923	0.0002085	3.6278	0.0018946	4.0271	0.0021031	522.2559263474297	33.915	0.10994	33.915	33.835	33.945	0					7	4	2	0	0	0	0.62108	1	11408	11408		35.152	1.6364	1	79258			8549	843	4914	4942	8710	8710					-0.026443320413363836
EEDPRWKL	8	Unmodified	_EEDPRWKL_					0	0	0			REV__nc|ENSG00000116747|P10155-3|RO60	REV__nc|ENSG00000116747|P10155-3|RO60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7726440429688	2	536.774731	1071.53491	0.70208	0.00037686	-2.4684	-0.001325	-1.7664	-0.00094813	536.7735930959433	25.922	0.3274	25.922	25.734	26.061	0					12	7	2	0	0	0	0.64144	1	7834	7834		42.396	3.59	1	87083	+		8550	14164	4915	4943	8711	8711					0.0020026843783398363
EEDPRWKL	8	Unmodified	_EEDPRWKL_					0	0	0			REV__nc|ENSG00000116747|P10155-3|RO60	REV__nc|ENSG00000116747|P10155-3|RO60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7724609375	2	536.774731	1071.53491	-1.4042	-0.00075373	-0.72645	-0.00038994	-2.1306	-0.0011437	536.7739987331852	26.039	0.31423	26.039	25.767	26.081	0					8	5	2	0	0	0	0.5676	1	8330	8330		53.351	0.41475	1	100240	+		8551	14164	4915	4943	8712	8712					0.0020026843783398363
EEDTSVAIQ	9	Unmodified	_EEDTSVAIQ_					0	0	0			REV__tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	REV__tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2307434082031	2	496.232561	990.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.948	1	29.948	29.448	30.448	0								0	0	0	0.29774	1	11144	11144		35.618	1.4457	1		+		8552	21824	4916	4944	8713	8713					-0.04503727169571903
EEDVSVLGN	9	Unmodified	_EEDVSVLGN_					0	0	0			REV__ENSG00000118496|ENST00000237281|FBXO30	REV__ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.22833251953125	2	481.227279	960.440005	0.085595	4.1191E-05	0.50359	0.00024234	0.58919	0.00028353	481.22781237293185	36.154	0.25108	36.154	36.055	36.306	0					24	12	3	0	0	0	0.30951	1	11842	11842		49.442	1.7842	1	82409	+		8553	14220	4917	4945	8714	8714					-0.04179709823995381
EEEDPLDQL	9	Unmodified	_EEEDPLDQL_					0	0	0		ENSG00000181924|ENST00000355693|COA4;nc|ENSG00000181924|Q9NYJ1-2|COA4	ENSG00000181924|ENST00000355693|COA4	ENSG00000181924|ENST00000355693|COA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.16534423828125	3	363.16451	1086.4717	-0.083257	-3.0236E-05	1.6308	0.00059223	1.5475	0.000562	363.1653478296829	22.396	0.5187	22.396	22.287	22.805	0					22	10	4	0	0	0	0.098791	1	7453	7453		79.713	3.5429	1	757520			8554	6870	4918	4946	8715	8715					-0.06807761860704886
EEEEAATVIK	10	Unmodified	_EEEEAATVIK_					0	0	0		ENSG00000112041|ENST00000229771|TULP1;nc|ENSG00000112041|O00294-2|TULP1;TULP1|p.Q301Rfs*9|1|0.43|ENSG00000112041|chr6:35506101-35506101|G/-|frameshift_variant	ENSG00000112041|ENST00000229771|TULP1	ENSG00000112041|ENST00000229771|TULP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.7857055664062	2	559.782418	1117.55028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.166	1	37.166	36.666	37.666	0								0	0	0	0.37602	1	12179	12179		37.812	8.662	1				8555	2712	4919	4947	8716	8716					-0.0037890955563852913
EEEEGCGHTH	10	Unmodified	_EEEEGCGHTH_					0	0	0		ENSG00000204619|ENST00000376772|PPP1R11	ENSG00000204619|ENST00000376772|PPP1R11	ENSG00000204619|ENST00000376772|PPP1R11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.2060546875	2	564.206552	1126.39855	0.37265	0.00021025	-2.4955	-0.001408	-2.1228	-0.0011977	564.2053127999839	11.852	0.22171	11.852	11.786	12.007	0					22	7	4	0	0	0	0.61187	1	2386	2386		32.812	2.4947	1	637750			8556	7714	4920	4948	8717	8717					-0.15959213854966947
EEEEQDHGVG	10	Unmodified	_EEEEQDHGVG_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-2|TAOK1;ENST00000577583.1_1_17:27807410-27838022:+|nuORF	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.82086181640625	3	376.819513	1127.43671	0.25888	9.7551E-05	2.2591	0.00085125	2.5179	0.00094881	376.8207199321138	16.53	0.2238	16.53	16.438	16.662	0					18	5	5	0	0	0	0.56063	1	4486	4486		38.754	5.7142	1	1695200			8557	22512	4921	4949	8718	8718					-0.12191004668670757
EEEERRIAE	9	Unmodified	_EEEERRIAE_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.78125	2	580.780741	1159.54693	1.7366	0.0010086	-1.0776	-0.00062585	0.65895	0.00038271	580.7801908239694	19.433	0.16591	19.433	19.326	19.492	0					8	3	3	0	0	0	0.24095	1	6018	6018		56.721	5.5284	1	771120			8558	6934	4922	4950	8719	8719					-0.02646159609616916
EEEGPSTR	8	Unmodified	_EEEGPSTR_					0	0	0			REV__ENSG00000070182|ENST00000644917|SPTB	REV__ENSG00000070182|ENST00000644917|SPTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7041015625	2	452.703971	903.393389	0.27692	0.00012536	-0.66587	-0.00030144	-0.38895	-0.00017608	452.70402785262166	15.26	0.18437	15.26	15.174	15.358	0					11	4	4	0	0	0	0.51384	1	3912	3912		58.782	0	1	2563300	+		8559	13170	4923	4951	8720	8720					-0.062171496552878125
EEEGTPRDQ	9	Unmodified	_EEEGTPRDQ_					0	0	0		ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant;ITGAL|p.D890Tfs*9|3|0.12|ENSG00000005844|chr16:30510924-30510924|G/-|frameshift_variant;nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant	ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7301635742188	2	530.730717	1059.44688	0.28748	0.00015257	-0.80293	-0.00042614	-0.51545	-0.00027357	530.7300809792812	19.101	0.60847	19.101	18.951	19.559	0					26	12	4	0	0	0	0.35045	1	5968	5968		45.952	1.8352	1	784900			8560	966	4924	4952	8721	8721					-0.0804639694342768
EEEHDLKM	8	Unmodified	_EEEHDLKM_					0	0	0			REV__ENSG00000124194|ENST00000342560|GDAP1L1	REV__ENSG00000124194|ENST00000342560|GDAP1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7274169921875	2	515.729132	1029.44371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.372	1	25.372	24.872	25.872	0								0	0	0	1.7419	1	7628	7628		53.351	9.2347	1		+		8561	14381	4925	4953	8722	8722					-0.0698336332177405
EEEIDDIGYV	10	Unmodified	_EEEIDDIGYV_					0	0	0		MIEF2|p.A442V|1|0.26|ENSG00000177427|chr17:18264724-18264724|C/T|missense_variant	MIEF2|p.A442V|1|0.26|ENSG00000177427|chr17:18264724-18264724|C/T|missense_variant	MIEF2|p.A442V|1|0.26|ENSG00000177427|chr17:18264724-18264724|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.2651977539062	2	591.264059	1180.51356	3.1796	0.00188	-1.5831	-0.00093606	1.5965	0.00094394	591.2632214643473	12.519	0.21656	12.519	12.472	12.688	0					8	5	3	0	0	0	0.72821	1	2694	2694		17.365	0	1	780500			8562	11367	4926	4954	8723	8723					-0.0694720617218536
EEEKKKRLQ	9	Unmodified	_EEEKKKRLQ_					0	0	0		ENSG00000036473|ENST00000039007|OTC;OTC|p.A280V|1|0.49|ENSG00000036473|chrX:38408997-38408997|C/T|missense_variant	ENSG00000036473|ENST00000039007|OTC	ENSG00000036473|ENST00000039007|OTC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.34130859375	2	594.340769	1186.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.04	1	13.04	12.54	13.54	0								0	0	0	0.19847	1	2929	2929		27.882	7.8855	1				8563	1174	4927	4955	8724	8724					0.08111873454822671
EEELLPGVDV	10	Unmodified	_EEELLPGVDV_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7833862304688	2	550.279512	1098.54447	1.8164	0.00099951	0.84832	0.00046681	2.6647	0.0014663	550.2787128126695	33.318	0.51516	33.318	33.135	33.65	0					34	10	5	0	0	0	0.55603	1	12678	12678		39.253	2.8061	1	695800			8564	2501	4928	4956	8725	8725					-0.0008600806727372401
EEEMGLSNEE	10	Unmodified	_EEEMGLSNEE_					0	0	0			REV__SCN5A|p.T1069M|1|0.31|ENSG00000183873|chr3:38580953-38580953|G/A|missense_variant	REV__SCN5A|p.T1069M|1|0.31|ENSG00000183873|chr3:38580953-38580953|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.728271484375	2	583.729526	1165.4445	1.371	0.00080028	-3.8561	-0.0022509	-2.4851	-0.0014506	583.7276490370613	33.89	0.18234	33.89	33.829	34.012	0					11	4	4	0	0	0	0.44601	1	13014	13014		51.193	5.2204	1	217810	+		8565	21495	4929	4957	8726	8726					-0.13160613463378468
EEENLSKY	8	Unmodified	_EEENLSKY_					0	0	0		ENST00000491527.1_1_3:9976275-9976602:+|nuORF;ENST00000465716.1_1_3:9976275-9979984:+|nuORF;ENSG00000163703|ENST00000452070|CRELD1;nc|ENSG00000163703|Q96HD1-2|CRELD1	ENST00000491527.1_1_3:9976275-9976602:+|nuORF	ENST00000491527.1_1_3:9976275-9976602:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2353820800781	2	506.235104	1010.45566	1.2545	0.00063508	-0.73512	-0.00037214	0.5194	0.00026294	506.234695610509	40.581	0.32349	40.581	40.439	40.762	0					10	7	2	0	0	0	0.66372	1	16120	16120		38.806	0	1	215920			8566	5599	4930	4958	8727	8727					-0.04915423306954381
EEEPPEQLF	9	Unmodified	_EEEPPEQLF_					0	0	0			REV__ENSG00000196990|ENST00000673969|FAM163B	REV__ENSG00000196990|ENST00000673969|FAM163B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.25830078125	2	559.256037	1116.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.027	1	34.027	33.527	34.527	0								0	0	0	0.24724	1	13078	13078		44.117	3.3386	1		+		8567	17300	4931	4959	8728	8728					-0.05606867618439537
EEEQIREE	8	Unmodified	_EEEQIREE_					0	0	0			REV__STARD7|p.N240Tfs*3|1|0.15|ENSG00000084090|chr2:96193102-96193102|T/-|frameshift_variant	REV__STARD7|p.N240Tfs*3|1|0.15|ENSG00000084090|chr2:96193102-96193102|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.23828125	2	531.240918	1060.46728	1.1803	0.00062702	3.1099	0.0016521	4.2902	0.0022791	531.2424558401765	29.301	0.47521	29.301	29.112	29.587	0					25	12	3	0	0	0	0.50061	1	9772	9772		60.118	1.3363	1	973770	+		8568	13343	4932	4960	8729	8729					-0.060532262835977235
EEEQSKTKT	9	Unmodified	_EEEQSKTKT_					0	0	0			REV__ENSG00000165972|ENST00000344280|CCDC38	REV__ENSG00000165972|ENST00000344280|CCDC38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7647094726562	2	540.264393	1078.51423	1.928	0.0010416	0.55555	0.00030014	2.4835	0.0013418	540.7652272966936	34.853	0.39478	34.853	34.731	35.126	0					24	10	3	0	0	0	0.38666	1	13013	13013		42.864	0.46813	1	839990	+		8569	16079	4933	4961	8730	8730					-0.021883667324573253
EEERKEQRGQ	10	Unmodified	_EEERKEQRGQ_					0	0	0		ENST00000307126.9_1_6:43594680-43596795:-|nuORF	ENST00000307126.9_1_6:43594680-43596795:-|nuORF	ENST00000307126.9_1_6:43594680-43596795:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	644.8171997070312	2	644.815647	1287.61674	2.9101	0.0018765	-0.48877	-0.00031517	2.4214	0.0015613	644.8152513335493	23.41	0.26641	23.41	23.301	23.568	0					14	5	4	0	0	0	0.67098	1	7948	7948		25.574	1.0549	1	765660			8570	8527	4934	4962	8731	8731					-0.01556280941008481
EEERLIFI	8	Unmodified	_EEERLIFI_					0	0	0			REV__ENSG00000169402|ENST00000404077|RSPH10B2	REV__ENSG00000169402|ENST00000404077|RSPH10B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7842407226562	2	524.787307	1047.56006	3.4386	0.0018045	-0.61028	-0.00032027	2.8283	0.0014843	524.7875245475879	44.348	0.4286	44.348	44.206	44.634	0					54	17	4	0	0	0	0.75243	1	17833	17833		26.796	2.5934	1	1224300	+		8571	15584	4935	4963	8732	8732					0.038183232404207956
EEESKQKSLPK	11	Unmodified	_EEESKQKSLPK_					0	0	0			REV__ENST00000560220.5_1_15:40676698-40685795:+|nuORF	REV__ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	651.8478393554688	2	651.848624	1301.6827	1.2386	0.00080739	-1.2131	-0.00079079	0.025475	1.6606E-05	651.8475093379013	31.156	0.11589	31.156	31.077	31.193	0					6	4	2	0	0	0	0.44903	1	10305	10305		47.96	0.73184	1	92632	+		8572	14534	4936	4964	8733	8733					0.04392115181190093
EEESRSVQEL	10	Unmodified	_EEESRSVQEL_					0	0	0			REV__FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant	REV__FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	603.2884521484375	2	603.285857	1204.55716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.272	1	40.272	39.772	40.772	0								0	0	0	0.091957	1	15977	15977		81.525	10.709	1		+		8573	15576	4937	4965	8734	8734					-0.03693596675043409
EEEVVIQY	8	Unmodified	_EEEVVIQY_					0	0	0			REV__PTPRM|p.R629C|1|0.61|ENSG00000173482|chr18:8113514-8113514|C/T|missense_variant	REV__PTPRM|p.R629C|1|0.61|ENSG00000173482|chr18:8113514-8113514|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.74560546875	2	504.747847	1007.48114	-0.81009	-0.00040889	-4.1338	-0.0020865	-4.9439	-0.0024954	504.74598439223104	29.459	0.1393	29.459	29.404	29.543	0					7	5	2	0	0	0	0.61938	1	9590	9590		45.952	1.8352	1	46250	+		8574	16512	4938	4966	8735	8735					-0.02229948784508906
EEFGAMNKL	9	Unmodified	_EEFGAMNKL_					0	0	0			REV__SPZ1|p.D78Y|1|0.29|ENSG00000164299|chr5:80320447-80320447|G/T|missense_variant	REV__SPZ1|p.D78Y|1|0.29|ENSG00000164299|chr5:80320447-80320447|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7518310546875	2	519.749867	1037.48518	1.4037	0.00072959	1.9908	0.0010347	3.3945	0.0017643	519.7510942983288	25.379	0.21985	25.379	25.289	25.509	0					9	5	3	0	0	0	0.35045	1	8679	8679		45.952	0	1	424660	+		8575	15979	4939	4967	8736	8736					-0.03206182562462345
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA;HLA-DRA|p.R69W|1|0.14|ENSG00000204287|chr6:32442570-32442570|C/T|missense_variant	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.255615234375	2	545.253631	1088.49271	0.32878	0.00017927	3.8364	0.0020918	4.1652	0.0022711	545.2555931203534	27.838	0.21684	27.838	27.73	27.947	0					7	4	2	0	0	0	0.24095	1	10143	10143		56.721	5.3856	1	192560			8576	7689	4940	4968	8737	8737					-0.047997069705161266
EEFINQIEI	9	Unmodified	_EEFINQIEI_					0	0	0			REV__ENSG00000166170|ENST00000299204|BAG5	REV__ENSG00000166170|ENST00000299204|BAG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.785888671875	2	567.787504	1133.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.518	1	23.518	23.018	24.018	0								0	0	0	0.22284	1	8114	8114		47.657	1.2006	1		+		8577	16098	4941	4969	8738	8738					-0.0009830183039412077
EEFKGEIAV	9	Unmodified	_EEFKGEIAV_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2;nc|ENSG00000119471|Q6YN16-2|HSDL2;ENST00000480881.1_1_9:115179142-115201087:+|nuORF	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.26422119140625	2	511.263665	1020.51278	0.40585	0.0002075	0.76632	0.00039179	1.1722	0.00059929	511.2641388959127	35.645	0.18588	35.645	35.544	35.73	0					11	5	3	0	0	0	0.071197	1	13825	13825		87.754	8.3033	1	109790			8578	3117	4942	4970	8739	8739					0.003340439694284214
EEFKTGKI	8	Unmodified	_EEFKTGKI_					0	0	0		tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7640686035156	2	476.260925	950.507297	-0.37743	-0.00017975	1.2268	0.0005843	0.84942	0.00040455	476.2610662975962	28.59	0.24497	28.59	28.477	28.722	0					15	6	3	0	0	0	0.61938	1	9494	9494		45.952	3.5558	1	114470			8579	23010	4943	4971	8740	8740					0.03006365177634507
EEFKTHHEM	9	Unmodified	_EEFKTHHEM_					0	0	0		ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	ENST00000505813.1_1_5:110284092-110284650:-|nuORF	ENST00000505813.1_1_5:110284092-110284650:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.7628173828125	2	594.26113	1186.50771	-0.54803	-0.00032568	0.86807	0.00051586	0.32004	0.00019019	594.2619001231506	18.192	0.089136	18.192	18.15	18.239	0					8	3	3	0	0	0	0.026848	1	4713	4713		85.161	57.279	1	56682			8580	1141	4944	4972	8741	8741					-0.07808583164819538
EEFKTHHEM	9	Unmodified	_EEFKTHHEM_					0	0	0		ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	ENST00000505813.1_1_5:110284092-110284650:-|nuORF	ENST00000505813.1_1_5:110284092-110284650:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.2619018554688	2	594.26113	1186.50771	-1.804	-0.001072	2.1653	0.0012868	0.36133	0.00021472	594.262633571442	18.296	0.10988	18.296	18.225	18.335	0					5	3	2	0	0	0	0.3269	1	4739	4739		32.812	6.0163	1	73999			8581	1141	4944	4972	8742	8742					-0.07808583164819538
EEFLNGRAV	9	Unmodified	_EEFLNGRAV_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7671508789062	2	517.766906	1033.51926	0.2323	0.00012028	0.29168	0.00015102	0.52398	0.0002713	517.7670624553377	32.832	0.12067	32.832	32.771	32.892	0					4	2	2	0	0	0	0.099922	1	12428	12428		79.451	21.64	1	175170			8582	2193	4945	4973	8743	8743					0.0038398192079966975
EEFLQMMK	8	Unmodified	_EEFLQMMK_					0	0	0		SERPINI1|p.Y131Ifs*3|1|0.32|ENSG00000163536|chr3:167790505-167790506|-/A|frameshift_variant;ENSG00000163536|ENST00000446050|SERPINI1	SERPINI1|p.Y131Ifs*3|1|0.32|ENSG00000163536|chr3:167790505-167790506|-/A|frameshift_variant	SERPINI1|p.Y131Ifs*3|1|0.32|ENSG00000163536|chr3:167790505-167790506|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7715454101562	2	528.248646	1054.48274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.538	1	19.538	19.038	20.038	0								0	0	0	1.7419	1	5071	5071		30.504	2.6214	1				8583	5572	4946	4974	8744	8744					-0.04232354291775664
EEFPNTCKM	9	Unmodified	_EEFPNTCKM_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.73388671875	2	549.73336	1097.45217	1.7157	0.0009432	-0.30114	-0.00016555	1.4146	0.00077765	549.733641050134	33.248	0.72835	33.248	32.962	33.69	0					41	17	3	0	0	0	0.24334	1	12712	12712		56.434	15.656	1	269530			8584	2200	4947	4975	8745	8745					-0.09266132676816596
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.3085327148438	2	570.308406	1138.60226	0.033086	1.8869E-05	0.66196	0.00037752	0.69505	0.00039639	570.3088038235773	32.221	0.29479	32.221	32.087	32.381	0					11	7	2	0	0	0	0.095583	1	11813	11813		74.255	19.479	1	290800			8585	4370	4948	4976	8746	8746					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.308837890625	2	570.308406	1138.60226	1.989	0.0011343	-0.88909	-0.00050706	1.0999	0.00062728	570.3077617962994	32.228	0.29158	32.228	32.081	32.372	0					13	6	3	0	0	0	0.0047071	1	12223	12223		157.33	17.359	1	691600			8586	4370	4948	4976	8747	8747					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.8089599609375	2	570.308406	1138.60226	-1.3546	-0.00077257	1.2329	0.00070315	-0.12171	-6.9413E-05	570.30914948377	32.013	0.12774	32.013	31.948	32.076	0					6	3	2	0	0	0	0.40353	1	11085	11085		34.173	0	1	79138			8587	4370	4948	4976	8748	8748					0.03850298648808348
EEFQNVRI	8	Unmodified	_EEFQNVRI_					0	0	0		ENST00000486040.1_1_7:2274759-2277695:-|nuORF;ENSG00000122687|ENST00000242257|MRM2;ENST00000467199.5_1_7:2274759-2281791:-|nuORF	ENST00000486040.1_1_7:2274759-2277695:-|nuORF	ENST00000486040.1_1_7:2274759-2277695:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7692260742188	2	517.766906	1033.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.64	1	32.64	32.14	33.14	0								0	0	0	1.7419	1	10561	10561		40.573	6.4001	1				8588	3279	4949	4977	8749	8749					0.0038398192079966975
EEFRASEL	8	Unmodified	_EEFRASEL_					0	0	0		ENSG00000021776|ENST00000156471|AQR;AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7378234863281	2	490.737814	979.461075	-0.54931	-0.00026957	0.45709	0.00022431	-0.092223	-4.5257E-05	490.7381521444557	33.159	0.15895	33.159	33.107	33.266	0					5	3	2	0	0	0	0.46905	1	12590	12590		63.306	15.391	1	251160			8589	1107	4950	4978	8750	8750					-0.02947699724472841
EEFRDSDDVL	10	Unmodified	_EEFRDSDDVL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.774169921875	2	612.772582	1223.53061	2.9732	0.0018219	0.013368	8.1912E-06	2.9865	0.0018301	612.7726668142367	41.875	0.4746	41.875	41.739	42.214	0					22	13	2	0	0	0	0.54861	1	16687	16687		40.058	2.2467	1	129210			8590	2675	4951	4979	8751	8751					-0.07221285566379265
EEFTGQLKV	9	Unmodified	_EEFTGQLKV_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7770385742188	2	525.776939	1049.53933	0.097813	5.1428E-05	-0.096904	-5.095E-05	0.00090891	4.7788E-07	525.7767273004971	37.067	0.18297	37.067	36.996	37.179	0					9	5	2	0	0	0	0.011389	1	14028	14028		134.81	47.056	1	395260			8591	1272	4952	4980	8752	8752					0.016537328607682866
EEFTGQLKV	9	Unmodified	_EEFTGQLKV_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7774047851562	2	525.776939	1049.53933	-1.2356	-0.00064967	3.2816	0.0017254	2.046	0.0010757	525.7784966650021	36.845	0.12891	36.845	36.763	36.892	0					10	6	2	0	0	0	0.25761	1	13183	13183		47.657	12.039	1	102060			8592	1272	4952	4980	8753	8753					0.016537328607682866
EEFTGQLKV	9	Unmodified	_EEFTGQLKV_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7774658203125	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.993	1	36.993	36.493	37.493	0								0	0	0	0.16453	1	14424	14424		49.442	0	1				8593	1272	4952	4980	8754	8754					0.016537328607682866
EEFTGQLKV	9	Unmodified	_EEFTGQLKV_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.77734375	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.974	1	36.974	36.474	37.474	0								0	0	0	0.045272	1	14415	14415		82.241	16.437	1				8594	1272	4952	4980	8755	8755					0.016537328607682866
EEFTKNNSL	9	Unmodified	_EEFTKNNSL_					0	0	0		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2618408203125	2	541.261653	1080.50875	1.8942	0.0010253	-1.5194	-0.0008224	0.3748	0.00020287	541.2607813443072	27.089	0.25164	27.089	26.969	27.221	0					13	6	3	0	0	0	0.30841	1	9432	9432		49.536	0.094497	1	289150			8595	7605	4953	4981	8756	8756					-0.028280455243020697
EEFTVARL	8	Unmodified	_EEFTVARL_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7578430175781	2	482.758549	963.502546	0.5762	0.00027817	-1.8447	-0.00089054	-1.2685	-0.00061238	482.75762028838454	39.383	0.18581	39.383	39.282	39.468	0					9	6	2	0	0	0	0.25102	1	14997	14997		99.375	25.4	1	60871			8596	6256;5148	4954	4982	8757	8757					0.01933481034848228
EEFTVARL	8	Unmodified	_EEFTVARL_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7578430175781	2	482.758549	963.502546	-0.6069	-0.00029299	-0.21197	-0.00010233	-0.81887	-0.00039532	482.7584620119958	39.309	0.24165	39.309	39.214	39.455	0					9	5	3	0	0	0	0.49216	1	15515	15515		60.972	18.497	1	143930			8597	6256;5148	4954	4982	8758	8758					0.01933481034848228
EEGDFIVKLPK	11	Unmodified	_EEGDFIVKLPK_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.5694885253906	3	425.571211	1273.6918	-2.6859	-0.001143	-1.6226	-0.00069053	-4.3085	-0.0018336	425.57042057895217	27.048	0.20059	27.048	26.964	27.164	0					8	5	2	0	0	0	0.57554	1	8788	8788		38.714	9.1633	1	90892	+		8598	14988	4955	4983	8759	8759					0.06590508537510686
EEGERLRK	8	Unmodified	_EEGERLRK_					0	0	0			REV__ENST00000397463.2_1_2:133402612-133403014:-|nuORF	REV__ENST00000397463.2_1_2:133402612-133403014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.52215576171875	3	339.520962	1015.54106	3.0195	0.0010252	0.67918	0.0002306	3.6987	0.0012558	339.52118506791084	12.519	0.36925	12.519	12.404	12.773	0					21	9	3	0	0	0	0.7126	1	2668	2668		34.173	2.2177	1	676800	+		8599	18910	4956	4984	8760	8760					0.03390786669365298
EEGLAEELQ	9	Unmodified	_EEGLAEELQ_					0	0	0			REV__ENST00000486555.5_1_2:25705724-25720338:-|nuORF	REV__ENST00000486555.5_1_2:25705724-25720338:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2447814941406	2	509.240386	1016.46622	-0.51414	-0.00026182	4.384	0.0022325	3.8698	0.0019707	509.24283274182636	25.892	0.66833	25.892	25.655	26.323	0					34	17	3	0	0	0	0.41113	1	8070	8070		40.778	0	1	542170	+		8600	19666	4957	4985	8761	8761					-0.041354406525101695
EEGLYCSKFM	10	Unmodified	_EEGLYCSKFM_					0	0	0			REV__ENST00000535414.5_1_1:101360442-101360541:-|nuORF	REV__ENST00000535414.5_1_1:101360442-101360541:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	603.7618408203125	2	603.762117	1205.50968	-0.59491	-0.00035919	0.88315	0.00053321	0.28824	0.00017403	603.7628584204688	36.97	0.45529	36.97	36.871	37.327	0					57	24	4	0	0	0	0.73854	1	12616	12616		10.265	0	1	468160	+		8601	20100	4958	4986	8762	8762					-0.08485290471253393
EEGPLFHN	8	Unmodified	_EEGPLFHN_					0	0	0		CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8;CPAMD8|p.H593Lfs*4|1|0.13|ENSG00000160111|chr19:16977489-16977489|T/-|frameshift_variant;CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant;CPAMD8|p.H1052Ifs*127|3|0.34|ENSG00000160111|chr19:16929074-16929074|C/-|frameshift_variant;CPAMD8|p.G174Afs*21|1|0.29|ENSG00000160111|chr19:17011645-17011645|C/-|frameshift_variant	CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.71923828125	2	471.719424	941.424296	0.58937	0.00027802	-1.2312	-0.00058078	-0.64183	-0.00030277	471.71878678662523	25.048	0.46185	25.048	24.794	25.256	0					19	9	3	0	0	0	0.7126	1	8856	8856		31.955	0	1	769070			8602	679	4959	4987	8763	8763					-0.04875951550377522
EEGVTLFGR	9	Unmodified	_EEGVTLFGR_					0	0	0		ENST00000312280.7_1_17:15162478-15168500:-|nuORF	ENST00000312280.7_1_17:15162478-15168500:-|nuORF	ENST00000312280.7_1_17:15162478-15168500:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7424621582031	2	504.261456	1006.50836	-0.82588	-0.00041646	0.5007	0.00025248	-0.32518	-0.00016398	504.26176344102055	34.794	0.24506	34.794	34.697	34.942	0					22	11	3	0	0	0	0.4966	1	11737	11737		12.207	0	1	137770			8603	8563	4960	4988	8764	8764					0.005365795465195333
EEHEVAVL	8	Unmodified	_EEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.23468017578125	2	463.234907	924.455261	2.5899	0.0011997	-1.0616	-0.00049179	1.5282	0.00070793	463.23354444145474	31.116	0.45556	31.116	30.898	31.353	0					29	9	5	0	0	0	0.4434	1	11602	11602		65.897	0.094285	1	837210			8604	4482	4961	4989	8765	8765					-0.00998798236150833
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8295288085938	2	545.828975	1089.6434	1.8959	0.0010348	-1.7235	-0.00094071	0.17243	9.4118E-05	545.8283116744035	41.51	0.17677	41.51	41.436	41.613	0					19	7	3	0	0	0	0.018419	1	16316	16316		124.59	39.235	1	520070			8605	1132	4962	4990	8766	8766					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8295288085938	2	545.828975	1089.6434	1.9372	0.0010574	-0.79198	-0.00043228	1.1452	0.00062508	545.8283827040761	41.481	0.21121	41.481	41.357	41.568	0					10	5	2	0	0	0	0.030949	1	16493	16493		108.09	52.583	1	241090			8606	1132	4962	4990	8767	8767					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8292236328125	2	545.828975	1089.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.45	1	41.45	40.95	41.95	0								0	0	0	0.00063673	1	16488	16488		129.68	55.428	1				8607	1132	4962	4990	8768	8768					0.10216059688286805
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.808837890625	2	529.808239	1057.60193	0.45306	0.00024003	0.2479	0.00013134	0.70096	0.00037137	529.8083245721491	26.905	0.28009	26.905	26.787	27.067	0					22	9	4	0	0	0	0.0066803	1	8211	8211		134.77	30.019	1	1140900			8608	6229	4963	4991	8769	8769					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8085327148438	2	529.808239	1057.60193	0.11426	6.0534E-05	0.37441	0.00019837	0.48867	0.0002589	529.8084402997231	27.123	0.38189	27.123	27.037	27.419	0					30	9	5	0	0	0	3.0938E-05	1	9425	9425		172.25	33.423	1	7384500			8609	6229	4963	4991	8770	8770					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8092651367188	2	529.808239	1057.60193	0.017043	9.0297E-06	1.1684	0.00061901	1.1854	0.00062804	529.8087647429794	26.903	0.23545	26.903	26.819	27.054	0					22	8	4	0	0	0	0.035106	1	8490	8490		77.318	17.199	1	1242300			8610	6229	4963	4991	8771	8771					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8085327148438	2	529.808239	1057.60193	1.7343	0.00091886	0.098935	5.2417E-05	1.8333	0.00097127	529.8083810577344	27.161	0.70529	27.161	27.008	27.713	0					36	14	4	0	0	0	3.0938E-05	1	9794	9794		172.25	44.787	1	7827400			8611	6229	4963	4991	8772	8772					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.54132080078125	3	353.541252	1057.60193	0.50398	0.00017818	-0.6664	-0.0002356	-0.16242	-5.7422E-05	353.5410732065595	27.144	0.36549	27.144	27.039	27.405	0					20	7	4	0	0	0	0.48623	1	9810	9810		33.922	1.1711	1	3638700			8612	6229	4963	4991	8773	8773					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.808837890625	2	529.808239	1057.60193	0.28659	0.00015184	-0.010673	-5.6545E-06	0.27592	0.00014618	529.8086420936438	27.144	0.21438	27.144	27.039	27.254	0					10	4	3	0	0	0	0.095583	1	9814	9814		54.776	5.3348	1	342190			8613	6229	4963	4991	8774	8774					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.80859375	2	529.808239	1057.60193	1.2181	0.00064538	-0.1106	-5.8598E-05	1.1075	0.00058678	529.8079012168757	26.979	0.15982	26.979	26.866	27.026	0					8	4	2	0	0	0	0.021035	1	8757	8757		114.89	29.979	1	125390			8614	6229	4963	4991	8775	8775					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8084716796875	2	529.808239	1057.60193	1.6344	0.00086592	-0.28454	-0.00015075	1.3499	0.00071517	529.8079919555772	27.097	0.27041	27.097	26.985	27.255	0					15	5	4	0	0	0	0.021015	1	9669	9669		104.06	35.27	1	1712900			8615	6229	4963	4991	8776	8776					0.07542878928961727
EEIDLSGNKL	10	Unmodified	_EEIDLSGNKL_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant;nc|ENSG00000081913|O60346-2|PHLPP1;PHLPP1|p.T1236Nfs*38|2|0.39|ENSG00000081913|chr18:62972653-62972654|-/A|frameshift_variant	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2919311523438	2	559.290411	1116.56627	0.51565	0.0002884	1.1099	0.00062074	1.6255	0.00090914	559.2913066182501	37.134	0.26578	37.134	37.026	37.292	0					11	7	3	0	0	0	0.14151	1	14047	14047		88.177	0.42264	1	117040			8616	1665	4964	4992	8777	8777					0.012647966812892264
EEIGVTRA	8	Unmodified	_EEIGVTRA_					0	0	0			REV__DNAH12|p.L560*|1|0.37|ENSG00000174844|chr3:57472643-57472643|A/-|frameshift_variant	REV__DNAH12|p.L560*|1|0.37|ENSG00000174844|chr3:57472643-57472643|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7354736328125	2	437.735074	873.455596	-0.93812	-0.00041065	0.38949	0.00017049	-0.54863	-0.00024015	437.73521964373157	17.693	0.11497	17.693	17.626	17.741	0					5	3	2	0	0	0	0.76283	1	4479	4479		25.45	3.4903	1	100510	+		8617	12724	4965	4993	8778	8778					0.01380621483701816
EEIIVKAM	8	Unmodified	_EEIIVKAM_					0	0	0		ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENST00000468078.1_1_7:6838857-6841171:-|nuORF	ENST00000468078.1_1_7:6838857-6841171:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.75946044921875	2	466.759704	931.504854	-0.50171	-0.00023418	-0.54898	-0.00025624	-1.0507	-0.00049042	466.75956603668754	34.643	0.21199	34.643	34.538	34.75	0					7	4	2	0	0	0	0.60719	1	13309	13309		47.916	7.343	1	265690			8618	3278	4966	4994	8779	8779					0.03636193448301128
EEIKALREA	9	Unmodified	_EEIKALREA_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.794677734375	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.223	1	24.223	23.723	24.723	0								0	0	0	0.018912	1	8125	8125		101.25	20.798	1				8619	7486	4967	4995	8780	8780					0.05028824126384279
EEIKEMHGL	9	Unmodified	_EEIKEMHGL_					0	0	0		ENSG00000163170|ENST00000327428|BOLA3;ENST00000477685.5_1_2:74362722-74372610:-|nuORF	ENSG00000163170|ENST00000327428|BOLA3	ENSG00000163170|ENST00000327428|BOLA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.269287109375	2	543.268424	1084.5223	1.1374	0.00061789	-0.10229	-5.5569E-05	1.0351	0.00056232	543.2682904886436	28.246	0.1669	28.246	28.141	28.308	0					8	3	3	0	0	0	0.011031	1	10316	10316		138.83	64.57	1	165920			8620	5535	4968	4996	8781	8781					-0.016585110166943196
EEIKTWGTV	9	Unmodified	_EEIKTWGTV_					0	0	0		ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1	ENSG00000129167|ENST00000682019|TPH1	ENSG00000129167|ENST00000682019|TPH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7794189453125	2	531.776939	1061.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.521	1	36.521	36.021	37.021	0								0	0	0	0.22075	1	14228	14228		40.778	6.8565	1				8621	3582	4969	4997	8782	8782					0.011017328607522359
EEINQQSQL	9	Unmodified	_EEINQQSQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.7660522460938	2	544.76456	1087.51457	0.49565	0.00027001	2.0065	0.0010931	2.5022	0.0013631	544.7657017913798	30.099	0.15716	30.099	30.014	30.171	0					11	6	2	0	0	0	0.18416	1	9863	9863		63.534	12.341	1	93512			8622	6256	4970	4998	8783	8783					-0.025689470126280867
EEINQQSQL	9	Unmodified	_EEINQQSQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.765380859375	2	544.76456	1087.51457	1.9505	0.0010625	-0.43411	-0.00023649	1.5163	0.00082605	544.7644111624825	30.358	0.15323	30.358	30.263	30.416	0					8	3	3	0	0	0	0.0079272	1	11352	11352		145.46	33.353	1	571410			8623	6256	4970	4998	8784	8784					-0.025689470126280867
EEINQQSQL	9	Unmodified	_EEINQQSQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7648315429688	2	544.76456	1087.51457	1.9658	0.0010709	-1.1637	-0.00063392	0.80215	0.00043698	544.7639538708052	30.286	0.21114	30.286	30.131	30.342	0					9	4	3	0	0	0	0.037098	1	11208	11208		102.06	20.537	1	393400			8624	6256	4970	4998	8785	8785					-0.025689470126280867
EEINTKEVVQ	10	Unmodified	_EEINTKEVVQ_					0	0	0		ONECUT1|p.A298V|1|0.24|ENSG00000169856|chr15:52788992-52788992|G/A|missense_variant	ONECUT1|p.A298V|1|0.24|ENSG00000169856|chr15:52788992-52788992|G/A|missense_variant	ONECUT1|p.A298V|1|0.24|ENSG00000169856|chr15:52788992-52788992|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8096313476562	2	594.808968	1187.60338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.355	1	14.355	13.855	14.855	0								0	0	0	0.11831	1	3551	3551		76.17	16.051	1				8625	11872	4971	4999	8786	8786					0.01708468227047888
EEIQRDILL	9	Unmodified	_EEIQRDILL_					0	0	0		ENSG00000111885|ENST00000368468|MAN1A1;MAN1A1|p.P173Rfs*30|1|0.43|ENSG00000111885|chr6:119348548-119348548|G/-|frameshift_variant;nc|ENSG00000111885|P33908-2|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.8157958984375	2	564.816596	1127.61864	0.35239	0.00019904	-1.2052	-0.00068072	-0.85281	-0.00048168	564.8160779934838	38.234	0.1127	38.234	38.174	38.287	0					6	4	2	0	0	0	0.25716	1	14525	14525		54.776	0.053964	1	100260			8626	2705	4972	5000	8787	8787					0.059933798148904316
EEIRATATEI	10	Unmodified	_EEIRATATEI_					0	0	0			REV__ENSG00000127946|ENST00000336926|HIP1	REV__ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.796142578125	2	566.79586	1131.57717	1.767	0.0010016	-1.067	-0.00060477	0.70004	0.00039678	566.795305207937	25.095	0.14518	25.095	25.019	25.164	0					8	3	3	0	0	0	0.55603	1	8550	8550		39.253	3.6345	1	206890	+		8627	14502	4973	5001	8788	8788					0.016641990555626762
EEIRRKFEE	9	Unmodified	_EEIRRKFEE_					0	0	0		nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;FAM184A|p.L424Ffs*10|1|0.45|ENSG00000111879|chr6:119020038-119020039|-/A|frameshift_variant;nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.D182Tfs*21|1|0.26|ENSG00000111879|chr6:119024430-119024430|T/-|frameshift_variant	nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.550537109375	3	412.55081	1234.6306	0.059181	2.4415E-05	-1.0792	-0.00044522	-1.02	-0.00042081	412.55032315707547	24.053	0.41165	24.053	23.915	24.326	0					13	8	2	0	0	0	0.25761	1	8389	8389		54.722	2.5552	1	175950			8628	2704	4974	5002	8789	8789					0.022669965581144425
EEIVNLTKL	9	Unmodified	_EEIVNLTKL_					0	0	0		ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8077392578125	2	529.808239	1057.60193	0.41921	0.0002221	0.64381	0.0003411	1.063	0.0005632	529.8077342145913	26.898	0.067152	26.898	26.833	26.9	0					4	2	2	0	0	0	0.49718	1	8502	8502		25.574	0	1	53136			8629	3156	4975	5003	8790	8790					0.0754287892893899
EEKAEEWGGVT	11	Unmodified	_EEKAEEWGGVT_					0	0	0			REV__ENST00000305123.5_1_2:227663749-227664043:-|nuORF	REV__ENST00000305123.5_1_2:227663749-227664043:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.18994140625	3	412.191059	1233.55135	0.10653	4.3912E-05	-2.948	-0.0012151	-2.8415	-0.0011712	412.1900726053875	24.749	0.18422	24.749	24.66	24.844	0					8	4	3	0	0	0	0.63225	1	7775	7775		34.087	0.16487	1	197470	+		8630	18237	4976	5004	8791	8791					-0.056086951867200696
EEKEEKKKM	9	Unmodified	_EEKEEKKKM_					0	0	0			REV__ENSG00000242732|ENST00000609883|RTL5	REV__ENSG00000242732|ENST00000609883|RTL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.5410461425781	3	393.541034	1177.60127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.091	1	12.091	11.591	12.591	0								0	0	0	0.25587	1	2492	2492		42.864	6.4175	1		+		8631	17697	4977	5005	8792	8792					0.019577162175664853
EEKEEKKL	8	Unmodified	_EEKEEKKL_					0	0	0			REV__ENST00000590548.5_1_19:11594499-11598073:-|nuORF	REV__ENST00000590548.5_1_19:11594499-11598073:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.781982421875	2	516.782222	1031.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.63	1	29.63	29.13	30.13	0								0	0	0	1.7419	1	10992	10992		104.75	0	1		+		8632	15791	4978	5006	8793	8793					0.035377155151991246
EEKEKLGLG	9	Unmodified	_EEKEKLGLG_					0	0	0			REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7767639160156	2	501.776939	1001.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.869	1	16.869	16.369	17.369	0								0	0	0	0.16876	1	4089	4089		55.504	7.8469	1		+		8633	14462	4979	5007	8794	8794					0.03861732860775646
EEKHPVSSPAP	11	Unmodified	_EEKHPVSSPAP_					0	0	0		ENST00000264716.8_1_2:28616232-28616613:+|nuORF	ENST00000264716.8_1_2:28616232-28616613:+|nuORF	ENST00000264716.8_1_2:28616232-28616613:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.2984619140625	2	589.296027	1176.5775	1.4731	0.00086811	1.0852	0.00063953	2.5584	0.0015076	589.297038433973	29.154	1.2374	29.154	28.911	30.148	0					77	26	5	0	0	0	0.64626	1	10953	10953		32.751	2.1817	1	1682400			8634	8337	4980	5008	8795	8795					-0.00372381224565288
EEKKIKVIL	9	Unmodified	_EEKKIKVIL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.240966796875	3	367.241025	1098.70125	0.081559	2.9952E-05	-0.11713	-4.3015E-05	-0.035571	-1.3063E-05	367.24094624369263	25.945	0.35165	25.945	25.734	26.086	0					15	8	3	0	0	0	0.61124	1	7814	7814		24.519	13.932	1	337970			8635	5463	4981	5009	8796	8796					0.15584321613710017
EEKKIKVIL	9	Unmodified	_EEKKIKVIL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.3583984375	2	550.357899	1098.70125	0.32354	0.00017806	0.94821	0.00052186	1.2718	0.00069992	550.3585739422743	25.981	0.26498	25.981	25.889	26.154	0					12	8	2	0	0	0	0.33044	1	8119	8119		47.657	5.2612	1	76158			8636	5463	4981	5009	8797	8797					0.15584321613710017
EEKKIKVIL	9	Unmodified	_EEKKIKVIL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3580932617188	2	550.357899	1098.70125	1.6873	0.00092861	-0.46611	-0.00025653	1.2212	0.00067208	550.3575305825789	26.176	0.45907	26.176	26.067	26.526	0					21	9	3	0	0	0	0.037569	1	9350	9350		101.6	39.493	1	804780			8637	5463	4981	5009	8798	8798					0.15584321613710017
EEKKIKVIL	9	Unmodified	_EEKKIKVIL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.24102783203125	3	367.241025	1098.70125	0.47906	0.00017593	-0.39462	-0.00014492	0.084435	3.1008E-05	367.24086706311357	26.21	0.65969	26.21	26.051	26.71	0					36	13	5	0	0	0	0.43426	1	9339	9339		54.776	19.624	1	2469800			8638	5463	4981	5009	8799	8799					0.15584321613710017
EEKKIKVIL	9	Unmodified	_EEKKIKVIL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3585205078125	2	550.357899	1098.70125	1.8158	0.00099933	-0.65699	-0.00036158	1.1588	0.00063775	550.3575638950325	26.142	0.57012	26.142	25.932	26.502	0					20	11	3	0	0	0	0.14603	1	9210	9210		68.787	19.345	1	892330			8639	5463	4981	5009	8800	8800					0.15584321613710017
EEKKTHEKL	9	Unmodified	_EEKKTHEKL_					0	0	0		ENST00000470137.5_1_13:44398084-44434086:-|nuORF;ENSG00000151773|ENST00000444614|CCDC122;nc|ENSG00000151773|Q5T0U0-2|CCDC122;ENST00000476570.2_1_13:44430578-44443512:-|nuORF	ENST00000470137.5_1_13:44398084-44434086:-|nuORF	ENST00000470137.5_1_13:44398084-44434086:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.3145141601562	2	571.31422	1140.61389	1.6333	0.00093312	-1.4543	-0.00083085	0.17902	0.00010227	571.3134365859539	13.103	0.11042	13.103	13.049	13.159	0					4	2	2	0	0	0	0.25716	1	2973	2973		54.776	10.66	1	111180			8640	4985	4982	5010	8801	8801					0.049204956721496274
EEKLMERLK	9	Unmodified	_EEKLMERLK_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.552978515625	3	392.553274	1174.63799	-1.2446	-0.00048856	2.3114	0.00090734	1.0668	0.00041878	392.55403714914	18.745	0.12212	18.745	18.68	18.802	0					7	4	2	0	0	0	0.24095	1	4954	4954		56.721	9.0637	1	52694	+		8641	15284	4983	5011	8802	8802					0.0576601283414675
EEKNLEKEI	9	Unmodified	_EEKNLEKEI_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.799560546875	2	566.298236	1130.58192	0.26257	0.00014869	0.94661	0.00053607	1.2092	0.00068476	566.298555629003	41.761	0.14636	41.761	41.672	41.818	0					13	7	2	0	0	0	0.25761	1	15861	15861		54.722	3.1946	1	85314	+		8642	13088	4984	5012	8803	8803					0.021850831983329044
EEKNLEKEI	9	Unmodified	_EEKNLEKEI_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.29833984375	2	566.298236	1130.58192	0.2396	0.00013569	0.4503	0.000255	0.6899	0.00039069	566.2984202709772	41.742	0.27014	41.742	41.646	41.916	0					25	11	3	0	0	0	0.18416	1	16389	16389		63.534	5.3039	1	376880	+		8643	13088	4984	5012	8804	8804					0.021850831983329044
EEKQKFEQL	9	Unmodified	_EEKQKFEQL_					0	0	0			REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.8059692382812	2	589.806228	1177.5979	-0.4499	-0.00026536	-0.43173	-0.00025464	-0.88164	-0.00052	589.8056510454547	30.38	0.17124	30.38	30.309	30.48	0					6	5	2	0	0	0	0.48623	1	9985	9985		26.693	0	1	60878	+		8644	14377	4985	5013	8805	8805					0.016207894352419316
EEKQTVRK	8	Unmodified	_EEKQTVRK_					0	0	0			REV__ENSG00000198517|ENST00000343242|MAFK	REV__ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2896423339844	2	509.288005	1016.56146	0.19047	9.7003E-05	0.51503	0.0002623	0.7055	0.0003593	509.2883379476914	15.179	0.16634	15.179	15.112	15.278	0					11	6	2	0	0	0	0.5535	1	3366	3366		53.351	3.9099	1	65820	+		8645	17308	4986	5014	8806	8806					0.05383957329183886
EEKTQVKTF	9	Unmodified	_EEKTQVKTF_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.L1048*|1|0.18|ENSG00000133858|chr12:71632189-71632189|A/-|frameshift_variant;ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant;ZFC3H1|p.K385Nfs*9|5|0.36|ENSG00000133858|chr12:71645001-71645001|T/-|frameshift_variant;ZFC3H1|p.E390Nfs*4|1|0.39|ENSG00000133858|chr12:71644989-71644989|T/-|frameshift_variant;ZFC3H1|p.V423Sfs*2|1|0.32|ENSG00000133858|chr12:71644889-71644890|-/T|frameshift_variant;nc|ENSG00000133858|O60293-4|ZFC3H1;ZFC3H1|p.V320Sfs*2|1|0.13|ENSG00000133858|chr12:71656942-71656943|-/T|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.2959594726562	2	555.295496	1108.57644	1.6613	0.0009225	-1.0189	-0.0005658	0.64237	0.00035671	555.2949483997902	19.025	0.11515	19.025	18.967	19.083	0					4	2	2	0	0	0	0.33044	1	5956	5956		47.657	18.487	1	882750			8646	3875	4987	5015	8807	8807					0.026494044064975242
EEKVRIAEK	9	Unmodified	_EEKVRIAEK_					0	0	0		CAPZA2|p.A18E|1|0.12|ENSG00000198898|chr7:116888140-116888140|C/A|missense_variant	CAPZA2|p.A18E|1|0.12|ENSG00000198898|chr7:116888140-116888140|C/A|missense_variant	CAPZA2|p.A18E|1|0.12|ENSG00000198898|chr7:116888140-116888140|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.88031005859375	3	367.880267	1100.61897	0.47148	0.00017345	-0.38632	-0.00014212	0.085166	3.1331E-05	367.880117555546	13.725	0.24444	13.725	13.653	13.897	0					12	6	4	0	0	0	0.095583	1	3186	3186		80.455	3.137	1	586160			8647	371	4988	5016	8808	8808					0.07268799534745085
EELAMQLRL	9	Unmodified	_EELAMQLRL_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7999267578125	2	551.799891	1101.58523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.523	1	15.523	15.023	16.023	0								0	0	0	0.29774	1	3502	3502		35.618	0	1		+		8648	13191	4989	5017	8809	8809					0.03850054771351097
EELCPLGPQS	10	Unmodified	_EELCPLGPQS_					0	0	0			REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF	REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.754150390625	2	536.752607	1071.49066	0.20262	0.00010876	3.0858	0.0016563	3.2885	0.0017651	536.7541541139203	18.378	0.14858	18.378	18.282	18.431	0					6	3	2	0	0	0	0.26198	1	5379	5379		71.877	15.156	1	485710	+		8649	20553	4990	5018	8810	8810					-0.04222503770643016
EELDKANMPI	10	Unmodified	_EELDKANMPI_					0	0	0			REV__RTCB|p.M246Wfs*11|4|0.28|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant	REV__RTCB|p.M246Wfs*11|4|0.28|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.2854614257812	2	580.286814	1158.55907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.232	1	46.232	45.732	46.732	0								0	0	0	0.3805	1	18504	18504		36.447	1.2947	1		+		8650	13522	4991	5019	8811	8811					-0.013862591907809474
EELDKIKCL	9	Unmodified	_EELDKIKCL_					0	0	0			REV__ENST00000573177.1_1_18:3603669-3604008:+|nuORF	REV__ENST00000573177.1_1_18:3603669-3604008:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7930908203125	2	545.794275	1089.574	1.9026	0.0010384	-3.8902	-0.0021232	-1.9876	-0.0010848	545.7918916745231	13.696	0.15726	13.696	13.591	13.748	0					7	3	3	0	0	0	0.61124	1	3407	3407		19.104	15.944	1	308700	+		8651	20396	4992	5020	8812	8812					0.0327923267720962
EELEEERQ	8	Unmodified	_EELEEERQ_					0	0	0			REV__ENSG00000100941|ENST00000216832|PNN	REV__ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2381591796875	2	531.240918	1060.46728	1.6894	0.0008975	2.0805	0.0011052	3.7699	0.0020027	531.2419902754904	29.447	1.0073	29.447	29.19	30.197	0					51	20	4	0	0	0	0.41701	1	10706	10706		68.787	0	1	6325800	+		8652	13578	4993	5021	8813	8813					-0.06053226283620461
EELEKSIAV	9	Unmodified	_EELEKSIAV_					0	0	0		nc|ENSG00000134602|Q9P289-2|STK26;nc|ENSG00000134602|Q9P289-3|STK26;ENSG00000134602|ENST00000394334|STK26	nc|ENSG00000134602|Q9P289-2|STK26	nc|ENSG00000134602|Q9P289-2|STK26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.277099609375	2	509.276772	1016.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.485	1	33.485	32.985	33.985	0								0	0	0	0.23459	1	12386	12386		45.952	11.779	1				8653	3931	4994	5022	8814	8814					0.031383131409029374
EELEKSIAV	9	Unmodified	_EELEKSIAV_					0	0	0		nc|ENSG00000134602|Q9P289-2|STK26;nc|ENSG00000134602|Q9P289-3|STK26;ENSG00000134602|ENST00000394334|STK26	nc|ENSG00000134602|Q9P289-2|STK26	nc|ENSG00000134602|Q9P289-2|STK26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2763671875	2	509.276772	1016.53899	-0.046798	-2.3833E-05	-0.53285	-0.00027137	-0.57965	-0.0002952	509.27622463353543	33.407	0.21689	33.407	33.3	33.517	0					6	4	2	0	0	0	0.20551	1	12711	12711		60.972	18.108	1	131700			8654	3931	4994	5022	8815	8815					0.031383131409029374
EELFNPLQ	8	Unmodified	_EELFNPLQ_					0	0	0			REV__SUSD2|p.P444Qfs*13|1|0.16|ENSG00000099994|chr22:24185917-24185917|C/-|frameshift_variant	REV__SUSD2|p.P444Qfs*13|1|0.16|ENSG00000099994|chr22:24185917-24185917|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2505798339844	2	495.250557	988.486562	0.74209	0.00036752	0.54123	0.00026804	1.2833	0.00063556	495.2502995158084	25.961	0.60049	25.961	25.496	26.096	0					18	12	3	0	0	0	0.41701	1	8911	8911		68.787	0	1	348960	+		8655	13507	4995	5023	8816	8816					-0.00814225202043417
EELGPCGAVCR	11	Unmodified	_EELGPCGAVCR_					0	0	0			REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF	REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.2567749023438	2	567.257533	1132.50051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.577	1	15.577	15.077	16.077	0								0	0	0	0.4249	1	3582	3582		31.53	2.3803	1		+		8656	19489	4996	5024	8817	8817					-0.06043639036920467
EELGRTGVY	9	Unmodified	_EELGRTGVY_					0	0	0			REV__SAYSD1|p.P141L|1|0.23|ENSG00000112167|chr6:39105562-39105562|G/A|missense_variant	REV__SAYSD1|p.P141L|1|0.23|ENSG00000112167|chr6:39105562-39105562|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2612915039062	2	512.258914	1022.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.256	1	38.256	37.756	38.756	0								0	0	0	0.29774	1	15027	15027		35.618	6.4687	1		+		8657	21488	4997	5025	8818	8818					-0.007077243161006663
EELIDQKL	8	Unmodified	_EELIDQKL_					0	0	0			REV__POP1|p.I399Lfs*23|2|0.09|ENSG00000104356|chr8:98136659-98136659|A/-|frameshift_variant	REV__POP1|p.I399Lfs*23|2|0.09|ENSG00000104356|chr8:98136659-98136659|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2716369628906	2	494.27149	986.528426	-0.45257	-0.00022369	1.0425	0.0005153	0.58997	0.00029161	494.2718614024626	30.968	0.44049	30.968	30.771	31.211	0					18	10	3	0	0	0	0.5676	1	11201	11201		53.351	3.9099	1	501010	+		8658	13720	4998	5026	8819	8819					0.034623304864680904
EELIKGMKI	9	Unmodified	_EELIKGMKI_					0	0	0			REV__tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	REV__tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2777099609375	2	530.807185	1059.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.737	1	25.737	25.237	26.237	0								0	0	0	0.28164	1	9049	9049		38.806	4.6336	1		+		8659	21696	4999	5027	8820	8820					0.07240126919509748
EELKEQAAL	9	Unmodified	_EELKEQAAL_					0	0	0			REV__ENSG00000155749|ENST00000392257|FLACC1	REV__ENSG00000155749|ENST00000392257|FLACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7749633789062	2	515.774396	1029.53424	0.076976	3.9702E-05	0.40685	0.00020984	0.48382	0.00024954	515.7744727247858	32.424	0.21471	32.424	32.333	32.547	0					19	8	3	0	0	0	0.19605	1	10797	10797		62.107	7.3311	1	290950	+		8660	15606	5000	5028	8821	8821					0.02065428998139396
EELKKMVQQ	9	Oxidation (M)	_EELKKM(Oxidation (M))VQQ_		EELKKM(1)VQQ		EELKKM(79)VQQ	0	0	1		ALG2|p.Q282E|1|0.08|ENSG00000119523|chr9:99218341-99218341|G/C|missense_variant	ALG2|p.Q282E|1|0.08|ENSG00000119523|chr9:99218341-99218341|G/C|missense_variant	ALG2|p.Q282E|1|0.08|ENSG00000119523|chr9:99218341-99218341|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.8031616210938	2	574.802631	1147.59071	1.908	0.0010967	-0.8058	-0.00046317	1.1022	0.00063354	574.8021222831246	39.766	0.60411	39.766	39.65	40.254	0					65	21	5	0	0	0	0.099922	1	15627	15627		79.451	7.5735	1	4787900			8661	116	5001	5029	8822	8822		9			0.022817335631543756
EELLFSHKL	9	Unmodified	_EELLFSHKL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;ENST00000374359.1_1_10:46274511-46281094:+|nuORF	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.3087768554688	2	558.308406	1114.60226	0.53135	0.00029666	-0.34168	-0.00019076	0.18967	0.0001059	558.3085745588932	37.522	0.32061	37.522	37.415	37.736	0					20	9	3	0	0	0	0.026538	1	14236	14236		112.41	51.439	1	263290			8662	1930	5002	5030	8823	8823					0.04954298648817712
EELLFSHKL	9	Unmodified	_EELLFSHKL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;ENST00000374359.1_1_10:46274511-46281094:+|nuORF	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.3092041015625	2	558.308406	1114.60226	-0.15929	-8.8933E-05	1.452	0.00081068	1.2927	0.00072174	558.3091917476967	37.486	0.15686	37.486	37.403	37.56	0					5	4	2	0	0	0	0.24095	1	14671	14671		56.721	12.604	1	70550			8663	1930	5002	5030	8824	8824					0.04954298648817712
EELLFSHKL	9	Unmodified	_EELLFSHKL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;ENST00000374359.1_1_10:46274511-46281094:+|nuORF	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.308837890625	2	558.308406	1114.60226	3.4695	0.0019371	-4.2053	-0.0023479	-0.7358	-0.0004108	558.3068546811324	37.402	0.40631	37.402	37.235	37.642	0					17	8	3	0	0	0	0.026538	1	14653	14653		112.41	19.268	1	456100			8664	1930	5002	5030	8825	8825					0.04954298648817712
EELLISLI	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EELLISLI_					1	0	0			REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant	REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2847900390625	2	486.286608	970.558664	-2.9136	-0.0014169	0.042027	2.0437E-05	-2.8716	-0.0013964	486.2866534987195	28.36	0.37171	28.36	28.227	28.599	0					32	9	5	0	0	0	0.52345	1	9389	9389		57.811	57.811	1	7362700	+		8665	17354	5003	5031	8826	8826					0.07220689151677107
EELLNKLK	8	Unmodified	_EELLNKLK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.79803466796875	2	493.797675	985.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.349	1	25.349	24.849	25.849	0								0	0	0	1.7419	1	7620	7620		51.335	1.8939	1				8666	3556	5004	5032	8827	8827					0.08742913620096715
EELLTKTF	8	Unmodified	_EELLTKTF_					0	0	0		ENSG00000183060|ENST00000684762|LYSMD4;ENST00000450512.1_3_15:100271609-100273550:-|nuORF;ENST00000344791.6_2_15:100271615-100273170:-|nuORF;ENST00000479791.1_1_15:100271835-100272213:-|nuORF	ENSG00000183060|ENST00000684762|LYSMD4	ENSG00000183060|ENST00000684762|LYSMD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7688293457031	2	490.768583	979.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.244	1	41.244	40.744	41.744	0								0	0	0	1.7419	1	15680	15680		20.482	7.5226	1				8667	6939	5005	5033	8828	8828					0.03203231974805476
EELNTRAKK	9	Unmodified	_EELNTRAKK_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8087768554688	2	544.806562	1087.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.726	1	23.726	23.226	24.226	0								0	0	0	0.14211	1	7895	7895		54.776	11.912	1		+		8668	21137	5006	5034	8829	8829					0.05827628874953916
EELQGVRSL	9	Unmodified	_EELQGVRSL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7796630859375	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.651	1	32.651	32.151	33.151	0								0	0	0	0.029433	1	10565	10565		96.034	39.313	1				8669	4854	5007	5035	8830	8830					0.03188251092274186
EELQGVRSL	9	Unmodified	_EELQGVRSL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7800903320312	2	515.780013	1029.54547	-0.086418	-4.4573E-05	1.6902	0.00087179	1.6038	0.00082722	515.7803965341443	32.713	0.17221	32.713	32.573	32.745	0					11	7	2	0	0	0	0.21263	1	10926	10926		60.118	10.094	1	124330			8670	4854	5007	5035	8831	8831					0.03188251092274186
EELQNRRHPL	10	Unmodified	_EELQNRRHPL_					0	0	0			REV__ENST00000491796.5_1_7:76950676-76950709:-|nuORF	REV__ENST00000491796.5_1_7:76950676-76950709:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	646.3469848632812	2	646.346917	1290.67928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.923	1	18.923	18.423	19.423	0								0	0	0	0.4201	1	4798	4798		10.866	4.9445	1		+		8671	19723	5008	5036	8832	8832					0.04556909917846497
EELQNVQRV	9	Unmodified	_EELQNVQRV_					0	0	0		ENSG00000166920|ENST00000396650|C15orf48	ENSG00000166920|ENST00000396650|C15orf48	ENSG00000166920|ENST00000396650|C15orf48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.7966918945312	2	557.796195	1113.57784	1.2946	0.00072214	-1.201	-0.00066989	0.093679	5.2254E-05	557.7952306696492	27.133	0.12326	27.133	27.087	27.211	0					6	4	2	0	0	0	0.076532	1	8328	8328		79.713	26.361	1	53685			8672	5947	5009	5037	8833	8833					0.02559038495292043
EELQNVQRV	9	Unmodified	_EELQNVQRV_					0	0	0		ENSG00000166920|ENST00000396650|C15orf48	ENSG00000166920|ENST00000396650|C15orf48	ENSG00000166920|ENST00000396650|C15orf48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7968139648438	2	557.796195	1113.57784	0.54347	0.00030315	0.47893	0.00026715	1.0224	0.00057029	557.7965040224159	27.375	0.21857	27.375	27.282	27.501	0					11	5	3	0	0	0	0.017421	1	9563	9563		122.18	34.48	1	450480			8673	5947	5009	5037	8834	8834					0.02559038495292043
EELQNVQRV	9	Unmodified	_EELQNVQRV_					0	0	0		ENSG00000166920|ENST00000396650|C15orf48	ENSG00000166920|ENST00000396650|C15orf48	ENSG00000166920|ENST00000396650|C15orf48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7969360351562	2	557.796195	1113.57784	-0.8859	-0.00049415	1.6112	0.00089874	0.72534	0.00040459	557.796992841073	27.205	0.13175	27.205	27.118	27.249	0					5	3	2	0	0	0	0.082776	1	8875	8875		87.696	13.441	1	115490			8674	5947	5009	5037	8835	8835					0.02559038495292043
EELQQKLLK	9	Unmodified	_EELQQKLLK_					0	0	0			REV__nc|ENSG00000046651|O75665-3|OFD1	REV__nc|ENSG00000046651|O75665-3|OFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.2264709472656	3	376.892284	1127.65502	0.031548	1.189E-05	-0.13405	-5.0522E-05	-0.1025	-3.8632E-05	376.8922044119818	24.022	0.32804	24.022	23.865	24.193	0					18	10	3	0	0	0	0.47038	1	7005	7005		42.864	0	1	297110	+		8675	13006	5010	5038	8836	8836					0.0963025671160267
EELRELPRQ	9	Unmodified	_EELRELPRQ_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.3162841796875	2	585.317294	1168.62004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.916	1	31.916	31.416	32.416	0								0	0	0	0.36266	1	12083	12083		21.96	0	1		+		8676	16220	5011	5039	8837	8837					0.042470139036595356
EELRPGLER	9	Unmodified	_EELRPGLER_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.8695373535156	3	366.86825	1097.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.519	1	29.519	29.019	30.019	0								0	0	0	0.3119	1	10939	10939		32.751	4.669	1		+		8677	13863	5012	5040	8838	8838					0.03803342357900874
EELRRKIQ	8	Unmodified	_EELRRKIQ_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3173828125	2	536.317097	1070.61964	1.9283	0.0010342	-1.1362	-0.00060934	0.79211	0.00042482	536.3166156172114	19.338	0.31465	19.338	19.276	19.591	0					15	6	4	0	0	0	0.41701	1	5970	5970		68.787	0	1	703000			8678	8112	5013	5041	8839	8839					0.08715638974467765
EELSGRAQPS	10	Unmodified	_EELSGRAQPS_					0	0	0			REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3	REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2611083984375	2	537.264727	1072.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.6	1	30.6	30.1	31.1	0								0	0	0	0.3805	1	11454	11454		36.447	3.6343	1		+		8679	14276	5014	5042	8840	8840					-0.018455272927667465
EELSRTKF	8	Unmodified	_EELSRTKF_					0	0	0		DCP2|p.K267E|1|0.14|ENSG00000172795|chr5:113001667-113001667|A/G|missense_variant	DCP2|p.K267E|1|0.14|ENSG00000172795|chr5:113001667-113001667|A/G|missense_variant	DCP2|p.K267E|1|0.14|ENSG00000172795|chr5:113001667-113001667|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2703857421875	2	505.269281	1008.52401	-0.77669	-0.00039244	1.5214	0.00076873	0.74474	0.00037629	505.27084295744504	33.727	0.16398	33.727	33.65	33.814	0					9	6	2	0	0	0	0.65148	1	11344	11344		40.778	0	1	45021			8680	753	5015	5043	8841	8841					0.02008866063579262
EELVELLVE	9	Unmodified	_EELVELLVE_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3;ENST00000573539.5_1_17:3442880-3458098:-|nuORF	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.791748046875	2	536.792255	1071.56996	-0.42626	-0.00022882	-1.7523	-0.00094062	-2.1786	-0.0011694	536.7916510038925	22.884	0.096535	22.884	22.818	22.914	0					9	3	3	0	0	0	0.16524	1	6805	6805		65.803	5.6849	1	126390			8681	6025	5016	5044	8842	8842					0.037034664551583774
EEMAKLIPH	9	Unmodified	_EEMAKLIPH_					0	0	0			REV__ENST00000295878.7_1_3:113721354-113723512:-|nuORF	REV__ENST00000295878.7_1_3:113721354-113723512:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2833251953125	2	534.281334	1066.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.197	1	20.197	19.697	20.697	0								0	0	0	0.22284	1	6376	6376		47.657	10.498	1		+		8682	15899	5017	5045	8843	8843					0.017503832255897578
EEMQPMLQA	9	Unmodified	_EEMQPMLQA_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;ROBO2|p.K1290Nfs*20|1|0.44|ENSG00000185008|chr3:77634974-77634974|A/-|frameshift_variant;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.75439453125	2	538.741185	1075.46782	2.0358	0.0010968	-1.1316	-0.00060966	0.90414	0.0004871	538.7405769364644	17.623	0.70747	17.623	17.563	18.271	0					17	14	2	0	0	0	0.45358	1	5109	5109		37.159	0	1	162440			8683	7053	5018	5046	8844	8844					-0.06689846159747503
EEMSIFHY	8	Unmodified	_EEMSIFHY_					0	0	0			REV__MPP1|p.T336M|1|0.2|ENSG00000130830|chrX:154781742-154781742|G/A|missense_variant	REV__MPP1|p.T336M|1|0.2|ENSG00000130830|chrX:154781742-154781742|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2293701171875	2	528.228768	1054.44298	1.6292	0.00086057	-0.61665	-0.00032573	1.0125	0.00053483	528.2285136038389	14.35	0.42043	14.35	14.188	14.609	0					12	8	3	0	0	0	0.6282	1	3561	3561		44.531	3.9584	1	599860	+		8684	20892	5019	5047	8845	8845					-0.08206157970835193
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.73974609375	2	508.238178	1014.4618	-0.097582	-4.9595E-05	-0.14753	-7.4978E-05	-0.24511	-0.00012457	508.2381121828257	23.204	0.23493	23.204	23.1	23.335	0					17	6	4	0	0	0	0.13267	1	6656	6656		71.877	10.906	1	864060			8685	5221	5020	5048	8846	8846					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.23809814453125	2	508.238178	1014.4618	-0.025775	-1.31E-05	-0.085919	-4.3667E-05	-0.11169	-5.6767E-05	508.2381483876309	23.523	0.39964	23.523	23.386	23.785	0					26	9	4	0	0	0	0.0012031	1	7786	7786		180.93	93.23	1	7068700			8686	5221	5020	5048	8847	8847					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2381591796875	2	508.238178	1014.4618	-0.57757	-0.00029354	0.65896	0.00033491	0.081397	4.1369E-05	508.2384798766748	23.249	0.37404	23.249	23.148	23.522	0					34	12	5	0	0	0	0.019882	1	6939	6939		122.18	47.133	1	4282000			8687	5221	5020	5048	8848	8848					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.23809814453125	2	508.238178	1014.4618	1.1396	0.00057919	-1.1412	-0.00058001	-0.0016231	-8.2493E-07	508.2376859966533	23.453	0.61938	23.453	23.295	23.915	0					33	12	4	0	0	0	0.0012031	1	8070	8070		180.93	92.283	1	17902000			8688	5221	5020	5048	8849	8849					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.23822021484375	2	508.238178	1014.4618	0.10913	5.5464E-05	-0.19512	-9.9168E-05	-0.08599	-4.3703E-05	508.2380584666848	23.301	0.28343	23.301	23.203	23.486	0					17	6	4	0	0	0	0.0033339	1	7078	7078		166.68	70.863	1	1507300			8689	5221	5020	5048	8850	8850					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2382507324219	2	508.238178	1014.4618	-1.892	-0.00096159	1.4883	0.00075641	-0.40372	-0.00020519	508.2389095992323	23.292	0.32621	23.292	23.188	23.514	0					22	7	5	0	0	0	0.0033339	1	7071	7071		166.68	99.185	1	2726800			8690	5221	5020	5048	8851	8851					-0.044849050754237396
EEPALRGAR	9	Unmodified	_EEPALRGAR_					0	0	0		ENST00000322428.9_1_8:145159507-145160549:+|nuORF	ENST00000322428.9_1_8:145159507-145160549:+|nuORF	ENST00000322428.9_1_8:145159507-145160549:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7725524902344	2	499.772522	997.530492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.643	1	13.643	13.143	14.143	0								0	0	0	0.3368	1	3216	3216		27.882	0	1				8691	8627	5021	5049	8852	8852					0.03162804014948506
EEPEPDRSSV	10	Unmodified	_EEPEPDRSSV_					0	0	0			REV__ENST00000518852.5_1_8:22298373-22298820:+|nuORF	REV__ENST00000518852.5_1_8:22298373-22298820:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.7578125	2	572.759475	1143.5044	-1.4496	-0.00083025	-0.18832	-0.00010786	-1.6379	-0.00093811	572.7594522267613	31.309	0.61807	31.309	31.128	31.746	0					41	16	3	0	0	0	0.67098	1	10903	10903		25.574	0	1	213460	+		8692	19932	5022	5050	8853	8853					-0.0616155473787785
EEPFASENQ	9	Unmodified	_EEPFASENQ_					0	0	0			REV__ENST00000494189.1_1_2:182968515-182982019:+|nuORF	REV__ENST00000494189.1_1_2:182968515-182982019:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.72265625	2	525.722361	1049.43017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.398	1	29.398	28.898	29.898	0								0	0	0	0.27939	1	9566	9566		39.253	2.8061	1		+		8693	15448	5023	5051	8854	8854					-0.09256897829391164
EEPICDVP	8	Unmodified	_EEPICDVP_					0	0	0			REV__ENST00000317935.10_1_2:171400495-171509628:+|nuORF	REV__ENST00000317935.10_1_2:171400495-171509628:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2032165527344	2	451.202218	900.389884	-0.33282	-0.00015017	2.2283	0.0010054	1.8954	0.00085523	451.2033103997644	20.755	0.16801	20.755	20.645	20.813	0					6	3	2	0	0	0	0.75243	1	6788	6788		26.796	2.5934	1	142650	+		8694	13187	5024	5052	8855	8855					-0.06429535753500204
EEPVLLTWV	9	Unmodified	_EEPVLLTWV_					0	0	0			REV__OVCH2|p.S358Ffs*6|1|0.34|ENSG00000183378|chr11:7696533-7696534|-/A|frameshift_variant	REV__OVCH2|p.S358Ffs*6|1|0.34|ENSG00000183378|chr11:7696533-7696534|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.302978515625	2	543.297507	1084.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.679	1	48.679	48.179	49.179	0								0	0	0	0.28996	1	19327	19327		37.159	2.9866	1		+		8695	16931	5025	5053	8856	8856					0.04155493900225338
EEPWAVEEL	9	Unmodified	_EEPWAVEEL_					0	0	0		ENSG00000160117|ENST00000404085|ANKLE1	ENSG00000160117|ENST00000404085|ANKLE1	ENSG00000160117|ENST00000404085|ANKLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2573852539062	2	551.258579	1100.50261	-1.3542	-0.00074654	-1.869	-0.0010303	-3.2232	-0.0017768	551.2576034352256	24.462	0.17741	24.462	24.329	24.506	0					8	4	2	0	0	0	0.37197	1	7620	7620		44.117	0	1	95200			8696	5340	5026	5054	8857	8857					-0.04362563755807969
EEQIINVKVE	10	Unmodified	_EEQIINVKVE_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.8861389160156	3	400.887199	1199.63977	-0.60702	-0.00024335	-2.2114	-0.00088651	-2.8184	-0.0011299	400.88644291102304	14.566	0.16863	14.566	14.457	14.626	0					7	3	3	0	0	0	0.74091	1	3640	3640		14.694	7.675	1	202920	+		8697	16154	5027	5055	8858	8858					0.04793345123766812
EEQKRIQLQ	9	Unmodified	_EEQKRIQLQ_					0	0	0			REV__nc|ENSG00000089177|Q96L93-5|KIF16B	REV__nc|ENSG00000089177|Q96L93-5|KIF16B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.3255615234375	2	586.325119	1170.63569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.435	1	23.435	22.935	23.935	0								0	0	0	0.1633	1	8074	8074		56.721	1.2168	1		+		8698	13407	5028	5056	8859	8859					0.057193004207192644
EERAEVSEL	9	Unmodified	_EERAEVSEL_					0	0	0		nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF	nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.259521484375	2	531.259111	1060.50367	1.7213	0.00091447	-0.86917	-0.00046176	0.85216	0.00045272	531.2584741681231	28.74	0.31431	28.74	28.613	28.927	0					16	6	4	0	0	0	0.014688	1	10568	10568		131.03	6.9513	1	766540			8699	11631	5029	5057	8860	8860					-0.024163493868854857
EEREPTPVL	9	Unmodified	_EEREPTPVL_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant;nc|ENSG00000120802|P42167-3|TMPO;TMPO|p.T99Lfs*12|2|0.34|ENSG00000120802|chr12:98527894-98527894|A/-|frameshift_variant;nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42167-2|TMPO;nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2801513671875	2	535.279846	1068.54514	0.17733	9.492E-05	1.012	0.00054168	1.1893	0.0006366	535.2805187899097	31.175	0.38998	31.175	30.982	31.372	0					23	9	4	0	0	0	0.0792	1	11281	11281		84.916	16.129	1	994820			8700	11500;3194	5030	5058	8861	8861					0.013608313724262189
EEREPTPVL	9	Unmodified	_EEREPTPVL_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant;nc|ENSG00000120802|P42167-3|TMPO;TMPO|p.T99Lfs*12|2|0.34|ENSG00000120802|chr12:98527894-98527894|A/-|frameshift_variant;nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42167-2|TMPO;nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2799682617188	2	535.279846	1068.54514	3.3668	0.0018022	-0.63746	-0.00034122	2.7294	0.001461	535.2799645653705	31.101	0.45556	31.101	30.898	31.353	0					21	9	4	0	0	0	0.087861	1	11579	11579		82.241	16.437	1	1615400			8701	11500;3194	5030	5058	8862	8862					0.013608313724262189
EERKHKGALQ	10	Unmodified	_EERKHKGALQ_					0	0	0		HYDIN|p.E2293Q|1|0.18|ENSG00000157423|chr16:70938732-70938732|C/G|missense_variant	HYDIN|p.E2293Q|1|0.18|ENSG00000157423|chr16:70938732-70938732|C/G|missense_variant	HYDIN|p.E2293Q|1|0.18|ENSG00000157423|chr16:70938732-70938732|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.3306274414062	2	598.330736	1194.64692	1.1546	0.0006908	-0.89001	-0.00053252	0.26454	0.00015828	598.3300873975866	12.634	0.094284	12.634	12.588	12.683	0					4	2	2	0	0	0	0.39827	1	2906	2906		56.434	3.4971	1	107090			8702	11217	5031	5059	8863	8863					0.057381225148674275
EERKHKGALQ	10	Unmodified	_EERKHKGALQ_					0	0	0		HYDIN|p.E2293Q|1|0.18|ENSG00000157423|chr16:70938732-70938732|C/G|missense_variant	HYDIN|p.E2293Q|1|0.18|ENSG00000157423|chr16:70938732-70938732|C/G|missense_variant	HYDIN|p.E2293Q|1|0.18|ENSG00000157423|chr16:70938732-70938732|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	598.3312377929688	2	598.330736	1194.64692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.677	1	12.677	12.177	13.177	0								0	0	0	0.39264	1	2756	2756		32.751	3.5805	1				8703	11217	5031	5059	8864	8864					0.057381225148674275
EERKRREEKRR	11	Unmodified	_EERKRREEKRR_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.6343994140625	3	524.632749	1570.87642	0.57443	0.00030137	2.2604	0.0011859	2.8348	0.0014872	524.6339367785099	19.089	0.10055	19.089	19.026	19.126	0					5	3	2	0	0	0	0.84089	1	5115	5115		6.3209	0.6221	1	171380			8704	4747	5032	5060	8865	8865					0.11381509460602501
EERLVVLL	8	Unmodified	_EERLVVLL_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.8000183105469	2	485.800217	969.585882	-0.67229	-0.0003266	0.69249	0.00033641	0.020201	9.8138E-06	485.8006184595555	36.079	0.23524	36.079	36.007	36.242	0					18	7	3	0	0	0	0.5676	1	14029	14029		53.351	2.1588	1	436970	+		8705	17603	5033	5061	8866	8866					0.09987217482728283
EERNQTQVL	9	Unmodified	_EERNQTQVL_					0	0	0		ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.7864379882812	2	558.785827	1115.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.783	1	23.783	23.283	24.283	0								0	0	0	0.099216	1	7192	7192		71.877	17.101	1				8706	2782	5034	5062	8867	8867					0.003944481156167967
EERPPAQAL	9	Unmodified	_EERPPAQAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.766845703125	2	505.766906	1009.51926	-0.044957	-2.2738E-05	-0.10807	-5.4657E-05	-0.15302	-7.7394E-05	505.7668235296432	25.256	0.61035	25.256	24.93	25.541	0					34	14	3	0	0	0	0.023074	1	8585	8585		116.9	28.727	1	580120			8707	1224	5035	5063	8868	8868					0.014879819208090339
EERPPAQAL	9	Unmodified	_EERPPAQAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7670593261719	2	505.766906	1009.51926	-0.74069	-0.00037462	0.23769	0.00012021	-0.50301	-0.0002544	505.7666855154038	24.99	0.64424	24.99	24.677	25.321	0					44	21	3	0	0	0	0.023074	1	7686	7686		116.9	42.649	1	318630			8708	1224	5035	5063	8869	8869					0.014879819208090339
EERPPAQAL	9	Unmodified	_EERPPAQAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.76654052734375	2	505.766906	1009.51926	1.0728	0.0005426	-1.7761	-0.00089827	-0.70323	-0.00035567	505.7659279545669	25.197	0.95912	25.197	24.593	25.552	0					47	19	4	0	0	0	0.0090225	1	8902	8902		143.11	52.33	1	1977200			8709	1224	5035	5063	8870	8870					0.014879819208090339
EERQRQKLE	9	Unmodified	_EERQRQKLE_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.32568359375	2	608.32565	1214.63675	0.22945	0.00013958	-0.14524	-8.8351E-05	0.084212	5.1228E-05	608.3256384312477	14.866	0.17316	14.866	14.82	14.994	0					5	4	2	0	0	0	0.28504	1	3732	3732		36.447	0	1	364230			8710	3009	5036	5064	8871	8871					0.03801514789643079
EERRIKEIV	9	Unmodified	_EERRIKEIV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.2310791015625	3	391.2313	1170.67207	-0.042718	-1.6713E-05	-0.24604	-9.6258E-05	-0.28876	-0.00011297	391.2312097715948	22.354	0.29025	22.354	22.27	22.561	0					10	8	2	0	0	0	0.30951	1	6311	6311		49.442	24.922	1	216390			8711	1647;11726	5037	5065	8872	8872					0.09356177317408765
EERRIKEIV	9	Unmodified	_EERRIKEIV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2314147949219	3	391.2313	1170.67207	-0.12767	-4.9948E-05	0.30732	0.00012023	0.17965	7.0285E-05	391.23139525918265	22.67	0.54475	22.67	22.548	23.093	0					31	13	4	0	0	0	0.47038	1	7392	7392		35.618	8.571	1	1322000			8712	1647;11726	5037	5065	8873	8873					0.09356177317408765
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.8874816894531	3	381.887533	1142.64077	0.0054099	2.066E-06	-0.12912	-4.9311E-05	-0.12371	-4.7245E-05	381.88747654502646	18.038	0.38337	18.038	17.945	18.329	0					24	13	4	0	0	0	0.47038	1	4413	4413		35.618	4.0885	1	683020			8713	1916	5038	5066	8874	8874					0.07515604283321409
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.8875427246094	3	381.887533	1142.64077	0.12439	4.7505E-05	0.080917	3.0901E-05	0.20531	7.8406E-05	381.8874558075707	18.334	0.56525	18.334	18.237	18.803	0					26	13	3	0	0	0	0.35021	1	5350	5350		45.972	12.051	1	9030000			8714	1916	5038	5066	8875	8875					0.07515604283321409
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.3280639648438	2	572.327662	1142.64077	0.079732	4.5633E-05	0.46866	0.00026822	0.54839	0.00031386	572.3280307955278	18.069	0.22036	18.069	17.989	18.209	0					20	7	4	0	0	0	0.1424	1	4648	4648		35.618	0	1	743330			8715	1916	5038	5066	8876	8876					0.07515604283321409
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.88775634765625	3	381.887533	1142.64077	0.45234	0.00017274	-0.080468	-3.073E-05	0.37187	0.00014201	381.887494300053	18.284	0.16943	18.284	18.224	18.394	0					7	3	3	0	0	0	0.4966	1	5597	5597		32.812	8.2932	1	646240			8716	1916	5038	5066	8877	8877					0.07515604283321409
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.3278198242188	2	572.327662	1142.64077	-1.4324	-0.00081978	1.5148	0.00086698	0.082477	4.7204E-05	572.3286880044121	18.144	0.23162	18.144	18.034	18.266	0					11	5	3	0	0	0	0.41113	1	4688	4688		12.207	2.5012	1	374440			8717	1916	5038	5066	8878	8878					0.07515604283321409
EESINFKFRK	10	Unmodified	_EESINFKFRK_					0	0	0		KIF15|p.K1251Nfs*11|1|0.08|ENSG00000163808|chr3:44848041-44848042|-/TTTCAAATTC|frameshift_variant	KIF15|p.K1251Nfs*11|1|0.08|ENSG00000163808|chr3:44848041-44848042|-/TTTCAAATTC|frameshift_variant	KIF15|p.K1251Nfs*11|1|0.08|ENSG00000163808|chr3:44848041-44848042|-/TTTCAAATTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.234619140625	3	433.234822	1296.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.493	1	17.493	16.993	17.993	0								0	0	0	0.37293	1	4946	4946		38.754	7.6855	1				8718	11253	5039	5067	8879	8879					0.0461615997185163
EESLGKHQVL	10	Unmodified	_EESLGKHQVL_					0	0	0			REV__nc|ENSG00000122136|Q9NY56-3|OBP2A	REV__nc|ENSG00000122136|Q9NY56-3|OBP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.3084716796875	2	570.306395	1138.59824	3.4242	0.0019528	0.39169	0.00022338	3.8159	0.0021762	570.3065715945322	32.195	0.5228	32.195	32.034	32.557	0					23	10	3	0	0	0	0.35046	1	12126	12126		58.782	11.125	1	1254000	+		8719	14328	5040	5068	8880	8880					0.034482091550898986
EESNNVCSGR	10	Unmodified	_EESNNVCSGR_					0	0	0			REV__EPHA4|p.M245Cfs*89|1|0.35|ENSG00000116106|chr2:221563821-221563821|T/-|frameshift_variant	REV__EPHA4|p.M245Cfs*89|1|0.35|ENSG00000116106|chr2:221563821-221563821|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.730224609375	2	547.730194	1093.44584	-1.5056	-0.00082466	-0.20668	-0.00011321	-1.7123	-0.00093787	547.7301095984222	17.369	0.48728	17.369	17.294	17.781	0					21	13	3	0	0	0	0.62235	1	4473	4473		31.53	1.6883	1	342690	+		8720	14135	5041	5069	8881	8881					-0.09714934583985269
EESPAPTL	8	Unmodified	_EESPAPTL_					0	0	0		nc|ENSG00000147509|O76081-3|RGS20;nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20	nc|ENSG00000147509|O76081-3|RGS20	nc|ENSG00000147509|O76081-3|RGS20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2087707519531	2	422.208358	842.402163	-0.88047	-0.00037174	2.7335	0.0011541	1.853	0.00078236	422.2093347956125	33.144	0.21368	33.144	33.046	33.26	0					10	6	2	0	0	0	0.70055	1	12240	12240		33.516	1.5607	1	126650			8721	4786	5042	5070	8882	8882					-0.025341760188098306
EESRTILV	8	Unmodified	_EESRTILV_					0	0	0			REV__tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	REV__tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7637634277344	2	473.763832	945.513111	-0.61271	-0.00029028	0.11141	5.278E-05	-0.5013	-0.0002375	473.76393758473927	29.792	0.21638	29.792	29.683	29.9	0					9	4	3	0	0	0	0.67394	1	11055	11055		37.159	1.5408	1	333510	+		8722	22163	5043	5071	8883	8883					0.038174636892904346
EESSSEEDLRT	11	Unmodified	_EESSSEEDLRT_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	641.276123046875	2	641.275686	1280.53682	0.21414	0.00013732	0.22752	0.0001459	0.44166	0.00028322	641.2759200714515	19.109	0.11182	19.109	19.054	19.166	0					8	3	3	0	0	0	0.48922	1	4877	4877		45.022	0.64502	1	172510	+		8723	16046	5044	5072	8884	8884					-0.09222812125517521
EESTVPRKL	9	Unmodified	_EESTVPRKL_					0	0	0			REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR	REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.796142578125	2	529.795663	1057.57677	1.2189	0.00064575	-0.044901	-2.3788E-05	1.174	0.00062196	529.795332077926	33.537	0.1655	33.537	33.451	33.616	0					6	4	2	0	0	0	0.35045	1	11793	11793		45.952	1.5748	1	133940	+		8724	15610	5045	5073	8885	8885					0.05028824126384279
EESVNIQNG	9	Unmodified	_EESVNIQNG_					0	0	0			REV__SCYL2|p.M629I|1|0.3|ENSG00000136021|chr12:100335649-100335649|G/T|missense_variant	REV__SCYL2|p.M629I|1|0.3|ENSG00000136021|chr12:100335649-100335649|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2297668457031	2	495.230353	988.446153	-0.40882	-0.00020246	-1.6586	-0.00082137	-2.0674	-0.0010238	495.2298006453445	41.855	0.21325	41.855	41.73	41.944	0					15	10	2	0	0	0	0.48389	1	15893	15893		34.173	1.3601	1	53985	+		8725	21499	5046	5074	8886	8886					-0.04853191592474104
EETAGLFLWR	10	Unmodified	_EETAGLFLWR_					0	0	0			REV__nc|ENSG00000143622|Q92963-3|RIT1	REV__nc|ENSG00000143622|Q92963-3|RIT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	611.314697265625	2	611.316763	1220.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.001	1	35.001	34.501	35.501	0								0	0	0	0.39244	1	11464	11464		32.812	2.4947	1		+		8726	21051	5047	5075	8887	8887					0.01748799534743739
EETGAKISV	9	Unmodified	_EETGAKISV_					0	0	0		KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant;KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant;KHDRBS1|p.A312Gfs*56|1|0.28|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2481689453125	2	467.248015	932.481476	0.047669	2.2273E-05	-0.35127	-0.00016413	-0.3036	-0.00014186	467.2479070177335	25.912	0.24334	25.912	25.744	25.988	0					8	4	2	0	0	0	0.21263	1	7824	7824		60.118	10.677	1	108210			8727	3234	5048	5076	8888	8888					0.012534709353417384
EETGAKISV	9	Unmodified	_EETGAKISV_					0	0	0		KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant;KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant;KHDRBS1|p.A312Gfs*56|1|0.28|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.24761962890625	2	467.248015	932.481476	0.37709	0.00017619	-0.92949	-0.0004343	-0.5524	-0.00025811	467.2475543409036	26.209	0.29592	26.209	26.083	26.379	0					12	7	2	0	0	0	0.026538	1	9002	9002		112.41	9.6376	1	1005800			8728	3234	5048	5076	8889	8889					0.012534709353417384
EETGAKISV	9	Unmodified	_EETGAKISV_					0	0	0		KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant;KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant;KHDRBS1|p.A312Gfs*56|1|0.28|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2478942871094	2	467.248015	932.481476	-0.13202	-6.1688E-05	-0.62454	-0.00029182	-0.75657	-0.0003535	467.2476758462027	26.193	0.25888	26.193	26.084	26.343	0					11	5	3	0	0	0	0.048471	1	9334	9334		95.815	10.456	1	525020			8729	3234	5048	5076	8890	8890					0.012534709353417384
EETGAKISV	9	Unmodified	_EETGAKISV_					0	0	0		KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant;KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant;KHDRBS1|p.A312Gfs*56|1|0.28|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.24761962890625	2	467.248015	932.481476	-0.50543	-0.00023616	-0.16732	-7.818E-05	-0.67275	-0.00031434	467.2479727611234	26.145	0.26515	26.145	26	26.265	0					8	5	2	0	0	0	0.078509	1	9195	9195		85.161	10.906	1	773580			8730	3234	5048	5076	8891	8891					0.012534709353417384
EETGAKISV	9	Unmodified	_EETGAKISV_					0	0	0		KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant;KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant;KHDRBS1|p.A312Gfs*56|1|0.28|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.24798583984375	2	467.248015	932.481476	0.61801	0.00028877	-0.43975	-0.00020547	0.17826	8.3292E-05	467.24758192537774	26.142	0.46145	26.142	25.837	26.298	0					22	9	3	0	0	0	0.063171	1	9212	9212		90.601	5.6853	1	701800			8731	3234	5048	5076	8892	8892					0.012534709353417384
EETKLDGF	8	Unmodified	_EETKLDGF_					0	0	0			REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;REV__nc|ENSG00000100888|Q9HCK8-2|CHD8;REV__CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7282409667969	2	469.726915	937.439277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.297	1	18.297	17.797	18.797	0								0	0	0	1.7419	1	5592	5592		33.516	1.5607	1		+		8732	12458;12455;12459	5049	5077	8893	8893					-0.03194504473037796
EETKQLVS	8	Unmodified	_EETKQLVS_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2478332519531	2	467.248015	932.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.999	1	25.999	25.499	26.499	0								0	0	0	1.7419	1	8307	8307		79.713	4.6693	1		+		8733	14494;21013;21012	5050	5078	8894	8894					0.012534709353417384
EETNLGVDK	9	Unmodified	_EETNLGVDK_					0	0	0			REV__ENST00000457356.8_1_8:72965279-72965408:+|nuORF	REV__ENST00000457356.8_1_8:72965279-72965408:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7483825683594	2	502.748379	1003.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.277	1	27.277	26.777	27.777	0								0	0	0	0.080575	1	9744	9744		77.318	5.4401	1		+		8734	19354	5051	5079	8895	8895					-0.01939734415611838
EETQANINAGQ	11	Unmodified	_EETQANINAGQ_					0	0	0			REV__ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.7705078125	2	587.770374	1173.52619	0.13417	7.8862E-05	-0.11634	-6.8382E-05	0.017829	1.0479E-05	587.7705564496099	21.558	0.23266	21.558	21.42	21.653	0					12	5	3	0	0	0	0.55715	1	6878	6878		40.058	0.80534	1	751780	+		8735	12159;14625	5052	5080	8896	8896					-0.05362749989308213
EETTPRLR	8	Unmodified	_EETTPRLR_					0	0	0			REV__SPEG|p.A1845T|1|0.74|ENSG00000072195|chr2:219481648-219481648|G/A|missense_variant	REV__SPEG|p.A1845T|1|0.74|ENSG00000072195|chr2:219481648-219481648|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3209228515625	2	501.272355	1000.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.389	1	16.389	15.889	16.889	0								0	0	0	1.7419	1	3919	3919		60.972	4.2509	1		+		8736	21595	5053	5081	8897	8897					0.029913842950804792
EETVRIVAL	9	Unmodified	_EETVRIVAL_					0	0	0		ENSG00000145012|ENST00000617246|LPP;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3009643554688	2	515.300581	1028.58661	1.1936	0.00061507	-0.70313	-0.00036233	0.49049	0.00025275	515.300530252625	40.742	0.14063	40.742	40.667	40.807	0					13	7	2	0	0	0	0.18605	1	15523	15523		63.306	4.5243	1	129600			8737	4652	5054	5082	8898	8898					0.07346012131756652
EETVRIVAL	9	Unmodified	_EETVRIVAL_					0	0	0		ENSG00000145012|ENST00000617246|LPP;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3004150390625	2	515.300581	1028.58661	0.15393	7.9318E-05	0.059932	3.0883E-05	0.21386	0.0001102	515.3007004228161	40.679	0.2749	40.679	40.55	40.825	0					11	5	3	0	0	0	0.047412	1	16158	16158		96.19	32.884	1	278700			8738	4652	5054	5082	8899	8899					0.07346012131756652
EEVAGFIKL	9	Unmodified	_EEVAGFIKL_					0	0	0			REV__nc|ENSG00000110619|P49589-2|CARS1	REV__nc|ENSG00000110619|P49589-2|CARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.78204345703125	2	503.2844	1004.55425	-0.063314	-3.1865E-05	-3.8374	-0.0019313	-3.9007	-0.0019632	503.28416624586083	31.046	0.68027	31.046	30.692	31.372	0					43	16	4	0	0	0	0.33044	1	11344	11344		47.657	10.498	1	840470	+		8739	13941	5055	5083	8900	8900					0.0521522472874949
EEVAHVAAGL	10	Unmodified	_EEVAHVAAGL_					0	0	0			REV__tr|U7T601|U7T601_FUSNUTryptophansynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpBPE=3SV=1	REV__tr|U7T601|U7T601_FUSNUTryptophansynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2613525390625	2	498.261456	994.50836	-0.70229	-0.00034993	1.4811	0.00073798	0.77881	0.00038805	498.2620126371545	28.181	0.73275	28.181	27.88	28.613	0					20	15	2	0	0	0	0.56015	1	10303	10303		38.806	5.9937	1	65943	+		8740	22194	5056	5084	8901	8901					0.010885795465128467
EEVAQQKSL	9	Unmodified	_EEVAQQKSL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2717895507812	2	516.272021	1030.52949	0.26903	0.00013889	0.60388	0.00031177	0.87292	0.00045066	516.2722282732395	21.577	0.11568	21.577	21.5	21.616	0					8	4	2	0	0	0	0.18416	1	5944	5944		63.534	5.3039	1	106600			8741	6707	5057	5085	8902	8902					0.01544544855391905
EEVAQQKSL	9	Unmodified	_EEVAQQKSL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2721557617188	2	516.272021	1030.52949	0.035822	1.8494E-05	0.043162	2.2283E-05	0.078984	4.0777E-05	516.2719966119747	21.863	0.61686	21.863	21.298	21.915	0					26	14	2	0	0	0	0.0023831	1	7018	7018		172.25	44.787	1	821910			8742	6707	5057	5085	8903	8903					0.01544544855391905
EEVAQQKSL	9	Unmodified	_EEVAQQKSL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2733764648438	2	516.272021	1030.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.582	1	21.582	21.082	22.082	0								0	0	0	0.0008658	1	6218	6218		141.52	22.777	1				8743	6707	5057	5085	8904	8904					0.01544544855391905
EEVAQQKSL	9	Unmodified	_EEVAQQKSL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2720947265625	2	516.272021	1030.52949	1.4628	0.0007552	-1.6547	-0.00085427	-0.1919	-9.9071E-05	516.2711762755298	21.753	0.36763	21.753	21.458	21.825	0					11	4	3	0	0	0	0.00072198	1	7280	7280		185.72	36.732	1	969740			8744	6707	5057	5085	8905	8905					0.01544544855391905
EEVAQQKSL	9	Unmodified	_EEVAQQKSL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2727661132812	2	516.272021	1030.52949	-1.5132	-0.00078121	2.3617	0.0012193	0.84853	0.00043807	516.2731443128707	21.642	0.16037	21.642	21.559	21.719	0					6	4	2	0	0	0	0.020674	1	6306	6306		120.87	10.749	1	154090			8745	6707	5057	5085	8906	8906					0.01544544855391905
EEVEPFLRM	9	Unmodified	_EEVEPFLRM_					0	0	0			REV__ENST00000338272.8_1_1:109638293-109638542:+|nuORF	REV__ENST00000338272.8_1_1:109638293-109638542:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.7855224609375	2	575.284074	1148.5536	1.4781	0.00085034	-2.9207	-0.0016802	-1.4426	-0.00082988	575.2822258940465	20.159	0.10161	20.159	20.101	20.203	0					5	3	2	0	0	0	0.16806	1	5351	5351		58.782	7.5893	1	53157	+		8746	18426	5058	5086	8907	8907					-0.014739379825869037
EEVEPFLRM	9	Unmodified	_EEVEPFLRM_					0	0	0			REV__ENST00000338272.8_1_1:109638293-109638542:+|nuORF	REV__ENST00000338272.8_1_1:109638293-109638542:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.2822265625	2	575.284074	1148.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.283	1	20.283	19.783	20.783	0								0	0	0	0.30009	1	5674	5674		35.618	21.481	1		+		8747	18426	5058	5086	8908	8908					-0.014739379825869037
EEVEVEQVQ	9	Unmodified	_EEVEVEQVQ_					0	0	0		ENST00000462640.1_1_22:37453452-37456991:+|nuORF;nc|ENSG00000100379|Q8N5Z5-2|KCTD17;ENSG00000100379|ENST00000403888|KCTD17	ENST00000462640.1_1_22:37453452-37456991:+|nuORF	ENST00000462640.1_1_22:37453452-37456991:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.761474609375	2	544.758943	1087.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.139	1	23.139	22.639	23.639	0								0	0	0	0.27025	1	6650	6650		40.778	1.972	1				8748	2016	5059	5087	8909	8909					-0.03691769106740139
EEVFSLHG	8	Unmodified	_EEVFSLHG_					0	0	0			REV__DYSF|p.P1020Rfs*37|2|0.33|ENSG00000135636|chr2:71570621-71570621|C/-|frameshift_variant	REV__DYSF|p.P1020Rfs*37|2|0.33|ENSG00000135636|chr2:71570621-71570621|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.22283935546875	2	459.2218	916.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.395	1	28.395	27.895	28.895	0								0	0	0	1.7419	1	9420	9420		28.254	1.4582	1		+		8749	12756	5060	5088	8910	8910					-0.03251067407609298
EEVHSHPL	8	Unmodified	_EEVHSHPL_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.23370361328125	2	474.232699	946.450845	-0.26648	-0.00012638	3.7867	0.0017958	3.5203	0.0016694	474.2341839146487	37.906	0.091469	37.906	37.855	37.946	0					7	5	2	0	0	0	0.8006	1	12394	12394		20.482	0.48506	1	44737	+		8750	15888	5061	5089	8911	8911					-0.024522626590396612
EEVIPKRL	8	Unmodified	_EEVIPKRL_					0	0	0		ENST00000460031.5_1_1:43220834-43232642:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000495874.5_1_1:43220834-43223503:-|nuORF	ENST00000460031.5_1_1:43220834-43232642:-|nuORF	ENST00000460031.5_1_1:43220834-43232642:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2977600097656	2	492.297842	982.581131	-1.2639	-0.0006222	0.41597	0.00020478	-0.8479	-0.00041742	492.2984334093247	37.6	0.3686	37.6	37.359	37.728	0					34	20	2	0	0	0	0.72381	1	12663	12663		30.504	0.18592	1	159960			8751	3033	5062	5090	8912	8912					0.08914333339953373
EEVKDRCTL	9	Carbamidomethyl (C)	_EEVKDRC(Carbamidomethyl (C))TL_	EEVKDRC(1)TL		EEVKDRC(62)TL		0	1	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2825317382812	2	575.282063	1148.54957	1.605	0.00092335	-1.2679	-0.00072941	0.33711	0.00019393	575.281446919751	20.486	0.14409	20.486	20.433	20.577	0					9	3	4	0	0	0	0.19952	1	6376	6376		61.691	22.438	1	544320			8752	6381	5063	5091	8913	8913	272				-0.01876027476305353
EEVKDRCTL	9	Carbamidomethyl (C)	_EEVKDRC(Carbamidomethyl (C))TL_	EEVKDRC(1)TL		EEVKDRC(85)TL		0	1	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2821044921875	2	575.282063	1148.54957	3.3211	0.0019106	-2.948	-0.0016959	0.37315	0.00021467	575.2805020994252	20.419	0.16634	20.419	20.311	20.477	0					7	3	3	0	0	0	0.078509	1	6495	6495		85.161	20.954	1	651460			8753	6381	5063	5091	8914	8914	272				-0.01876027476305353
EEVKDRCTL	9	Unmodified	_EEVKDRCTL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7716674804688	2	546.771331	1091.52811	1.8576	0.0010157	-1.1079	-0.00060574	0.74974	0.00040994	546.7707766235221	23.964	0.31269	23.964	23.875	24.188	0					14	7	3	0	0	0	0.16806	1	8020	8020		65.465	26.213	1	623560			8754	6381	5063	5092	8915	8915					-0.013994125050203365
EEVKDRCTL	9	Unmodified	_EEVKDRCTL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7721557617188	2	546.771331	1091.52811	1.1314	0.0006186	-0.32314	-0.00017668	0.80824	0.00044192	546.771213768032	23.752	0.18684	23.752	23.673	23.86	0					6	4	2	0	0	0	0.48623	1	7313	7313		33.922	11.342	1	79282			8755	6381	5063	5092	8916	8916					-0.013994125050203365
EEVKDRCTL	9	Unmodified	_EEVKDRCTL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7717895507812	2	546.771331	1091.52811	0.54439	0.00029766	0.38673	0.00021145	0.93112	0.00050911	546.7715970345797	23.889	0.21572	23.889	23.829	24.045	0					9	4	3	0	0	0	0.40353	1	8175	8175		41.427	9.8968	1	472160			8756	6381	5063	5092	8917	8917					-0.013994125050203365
EEVKDRCTL	9	Unmodified	_EEVKDRCTL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7717895507812	2	546.771331	1091.52811	1.9062	0.0010423	-0.70866	-0.00038747	1.1976	0.00065479	546.7707299575154	23.878	0.31754	23.878	23.813	24.13	0					16	6	4	0	0	0	0.21263	1	8167	8167		60.118	19.34	1	481300			8757	6381	5063	5092	8918	8918					-0.013994125050203365
EEVKSFRVL	9	Unmodified	_EEVKSFRVL_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.815185546875	2	553.813856	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.711	1	32.711	32.211	33.211	0								0	0	0	0.13137	1	12036	12036		64.207	20.09	1				8758	4309	5064	5093	8919	8919					0.06457701023100526
EEVKSFRVL	9	Unmodified	_EEVKSFRVL_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.814208984375	2	553.813856	1105.61316	1.819	0.0010074	-1.1868	-0.00065724	0.63221	0.00035012	553.8130147021571	32.707	0.21233	32.707	32.625	32.837	0					12	5	3	0	0	0	0.39215	1	12052	12052		42.396	1.618	1	127240			8759	4309	5064	5093	8920	8920					0.06457701023100526
EEVKSFRVL	9	Unmodified	_EEVKSFRVL_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.8143920898438	2	553.813856	1105.61316	0.91186	0.000505	-0.34604	-0.00019164	0.56583	0.00031336	553.8137191788057	32.632	0.26595	32.632	32.523	32.789	0					9	5	2	0	0	0	0.21263	1	12334	12334		60.118	8.7828	1	227420			8760	4309	5064	5093	8921	8921					0.06457701023100526
EEVLTEIEK	9	Unmodified	_EEVLTEIEK_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2905883789062	2	545.287337	1088.56012	0.57137	0.00031156	4.0244	0.0021944	4.5958	0.002506	545.2902277627938	20.452	0.16693	20.452	20.344	20.511	0					8	3	3	0	0	0	0.30841	1	6512	6512		51.335	3.6781	1	289060	+		8761	14190	5065	5094	8922	8922					0.019382784497565808
EEVMDVESG	9	Unmodified	_EEVMDVESG_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7057800292969	2	497.705322	993.396092	0.79894	0.00039764	0.1099	5.4696E-05	0.90884	0.00045233	497.70533139406	14.789	0.16281	14.789	14.731	14.893	0					8	3	3	0	0	0	0.61124	1	3925	3925		18.324	18.324	1	1533700	+	+	8762	12603	5066	5095	8923	8923					-0.100870623126184
EEVPHEPPFM	10	Unmodified	_EEVPHEPPFM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	606.2741088867188	2	606.273706	1210.53286	0.30976	0.0001878	-0.60943	-0.00036948	-0.29968	-0.00018169	606.2736009495376	18.969	0.19761	18.969	18.896	19.094	0					14	5	4	0	0	0	0.17315	1	5652	5652		71.296	14.575	1	826420	+		8763	14525	5067	5096	8924	8924					-0.06398528362274192
EEVPHEPPFM	10	Unmodified	_EEVPHEPPFM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	606.2741088867188	2	606.273706	1210.53286	0.75501	0.00045774	-1.1755	-0.00071266	-0.42046	-0.00025491	606.2733246352113	18.875	0.16593	18.875	18.818	18.984	0					10	3	4	0	0	0	0.3337	1	5886	5886		51.335	10.557	1	691900	+		8764	14525	5067	5096	8925	8925					-0.06398528362274192
EEVQFLGDRG	10	Unmodified	_EEVQFLGDRG_					0	0	0		AK9|p.A1133V|1|0.3|ENSG00000155085|chr6:109533423-109533423|G/A|missense_variant	AK9|p.A1133V|1|0.3|ENSG00000155085|chr6:109533423-109533423|G/A|missense_variant	AK9|p.A1133V|1|0.3|ENSG00000155085|chr6:109533423-109533423|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.2822265625	2	575.280377	1148.5462	1.8786	0.0010807	1.0279	0.00059136	2.9066	0.0016721	575.281092787683	20.419	0.26496	20.419	20.314	20.579	0					10	5	4	0	0	0	0.14426	1	6627	6627		87.696	21.267	1	1012100			8765	105	5068	5097	8926	8926					-0.022129542586753814
EEVQFLGDRG	10	Unmodified	_EEVQFLGDRG_					0	0	0		AK9|p.A1133V|1|0.3|ENSG00000155085|chr6:109533423-109533423|G/A|missense_variant	AK9|p.A1133V|1|0.3|ENSG00000155085|chr6:109533423-109533423|G/A|missense_variant	AK9|p.A1133V|1|0.3|ENSG00000155085|chr6:109533423-109533423|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2821655273438	2	575.280377	1148.5462	1.6845	0.00096905	1.1238	0.0006465	2.8083	0.0016156	575.2812338991686	20.386	0.31474	20.386	20.277	20.591	0					14	6	4	0	0	0	0.063601	1	6477	6477		104.75	0.68976	1	1239300			8766	105	5068	5097	8927	8927					-0.022129542586753814
EEVSNLKTL	9	Unmodified	_EEVSNLKTL_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1;LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.784423828125	2	516.782222	1031.54989	0.040952	2.1163E-05	0.26894	0.00013898	0.30989	0.00016015	516.7834233042225	31.626	0.26112	31.626	31.518	31.779	0					15	6	4	0	0	0	0.020674	1	11513	11513		120.87	13.861	1	224710			8767	5128	5069	5098	8928	8928					0.035377155151991246
EEVSNLKTL	9	Unmodified	_EEVSNLKTL_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1;LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7826538085938	2	516.782222	1031.54989	-1.4861	-0.000768	2.217	0.0011457	0.73084	0.00037769	516.7838013918722	31.381	0.18355	31.381	31.332	31.516	0					6	4	2	0	0	0	0.40353	1	10811	10811		41.427	5.8083	1	81131			8768	5128	5069	5098	8929	8929					0.035377155151991246
EEVVALAEK	9	Unmodified	_EEVVALAEK_					0	0	0			REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2719421386719	2	494.27149	986.528426	-0.046379	-2.2924E-05	0.01386	6.8504E-06	-0.032519	-1.6073E-05	494.2714839830865	32.055	0.2067	32.055	32.001	32.208	0					7	4	2	0	0	0	0.37197	1	12207	12207		44.117	0.49075	1	97907	+		8769	22095	5070	5099	8930	8930					0.03462330486479459
EEVVMGRVKL	10	Oxidation (M)	_EEVVM(Oxidation (M))GRVKL_		EEVVM(1)GRVKL		EEVVM(99)GRVKL	0	0	1			REV__INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant	REV__INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.3272705078125	2	588.326273	1174.63799	3.1882	0.0018757	-1.0119	-0.00059534	2.1763	0.0012804	588.3259637791062	18.971	0.26184	18.971	18.818	19.079	0					9	5	2	0	0	0	0.081767	1	5794	5794		98.629	19.178	1	703950	+		8770	13877	5071	5100	8931	8931		525			0.05766012834169487
EEVVQKLQ	8	Unmodified	_EEVVQKLQ_					0	0	0			REV__ENST00000477540.1_1_17:21215348-21217539:+|nuORF	REV__ENST00000477540.1_1_17:21215348-21217539:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.77154541015625	2	486.771657	971.528761	0.70355	0.00034247	-1.1565	-0.00056294	-0.45292	-0.00022047	486.7708891112206	40.433	0.10448	40.433	40.381	40.486	0					7	4	2	0	0	0	0.49216	1	15416	15416		60.972	0	1	58097	+		8771	12976	5072	5101	8932	8932					0.04185750206340799
EEWEDTKDSKE	11	Unmodified	_EEWEDTKDSKE_					0	0	0		ENST00000451324.6_1_1:196197356-196228734:-|nuORF;ENST00000498426.5_1_1:196197356-196286329:-|nuORF;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2	ENST00000451324.6_1_1:196197356-196228734:-|nuORF	ENST00000451324.6_1_1:196197356-196228734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	698.2979736328125	2	698.299161	1394.58377	-2.1707	-0.0015158	0.62071	0.00043344	-1.5499	-0.0010823	698.2997895895703	20.148	0.33356	20.148	20.005	20.339	0					16	7	3	0	0	0	0.25663	1	6234	6234		67.494	9.2637	1	480150			8772	5488	5073	5102	8933	8933					-0.09773952574391842
EEWEDTKDSKE	11	Unmodified	_EEWEDTKDSKE_					0	0	0		ENST00000451324.6_1_1:196197356-196228734:-|nuORF;ENST00000498426.5_1_1:196197356-196286329:-|nuORF;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2	ENST00000451324.6_1_1:196197356-196228734:-|nuORF	ENST00000451324.6_1_1:196197356-196228734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	698.2978515625	2	698.299161	1394.58377	-0.8568	-0.0005983	-0.57083	-0.00039861	-1.4276	-0.00099692	698.2987418320041	19.897	0.25498	19.897	19.756	20.011	0					12	8	2	0	0	0	0.63398	1	5426	5426		33.922	2.2874	1	131580			8773	5488	5073	5102	8934	8934					-0.09773952574391842
EEWEDTKDSKE	11	Unmodified	_EEWEDTKDSKE_					0	0	0		ENST00000451324.6_1_1:196197356-196228734:-|nuORF;ENST00000498426.5_1_1:196197356-196286329:-|nuORF;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2	ENST00000451324.6_1_1:196197356-196228734:-|nuORF	ENST00000451324.6_1_1:196197356-196228734:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	698.2973022460938	2	698.299161	1394.58377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.891	1	19.891	19.391	20.391	0								0	0	0	0.41424	1	5491	5491		33.922	3.6039	1				8774	5488	5073	5102	8935	8935					-0.09773952574391842
EEWQDEEF	8	Unmodified	_EEWQDEEF_					0	0	0		ENSG00000163141|ENST00000368931|BNIPL	ENSG00000163141|ENST00000368931|BNIPL	ENSG00000163141|ENST00000368931|BNIPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.216552734375	2	556.214369	1110.41418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.349	1	11.349	10.849	11.849	0								0	0	0	1.7419	1	2301	2301		12.959	1.4482	1				8775	5533	5074	5103	8936	8936					-0.13660604066285487
EEWRLNLT	8	Unmodified	_EEWRLNLT_					0	0	0			REV__nc|ENSG00000161973|Q96M95-2|CCDC42	REV__nc|ENSG00000161973|Q96M95-2|CCDC42	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	354.1850891113281	3	354.185579	1059.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.749	1	22.749	22.249	23.249	0								0	0	0	1.7419	1	6480	6480		32.812	6.1195	1		+		8776	15794	5075	5104	8937	8937					0.007522684378500344
EEYAREETK	9	Unmodified	_EEYAREETK_					0	0	0			REV__ENST00000563850.1_1_16:77896662-77916077:+|nuORF	REV__ENST00000563850.1_1_16:77896662-77916077:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.2698974609375	2	577.769842	1153.52513	-0.42048	-0.00024294	-3.545	-0.0020482	-3.9655	-0.0022911	578.2700284689604	15.71	0.16803	15.71	15.6	15.769	0					5	3	2	0	0	0	0.61124	1	4365	4365		19.104	2.6304	1	609900	+		8777	20319	5076	5105	8938	8938					-0.045489643582186545
EEYERRLLS	9	Unmodified	_EEYERRLLS_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;SYNGAP1|p.L1302Wfs*8|1|0.21|ENSG00000197283|chr6:33451772-33451772|C/-|frameshift_variant;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.809326171875	2	597.809302	1193.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.425	1	25.425	24.925	25.925	0								0	0	0	0.38404	1	7909	7909		1.3276	0	1				8778	7445	5077	5106	8939	8939					0.014993076667678906
EEYKGQNQCL	10	Unmodified	_EEYKGQNQCL_					0	0	0			REV__KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant	REV__KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.5179748535156	3	404.516889	1210.52884	-0.48476	-0.00019609	2.666	0.0010785	2.1813	0.00088236	404.5180750884618	18.961	0.12979	18.961	18.913	19.043	0					8	3	3	0	0	0	0.64162	1	5643	5643		29.17	2.1227	1	775160	+		8779	14458	5078	5107	8940	8940					-0.06800617855969904
EEYKNAKR	8	Unmodified	_EEYKNAKR_					0	0	0		RIC8B|p.P483R|1|0.5|ENSG00000111785|chr12:106860409-106860409|C/G|missense_variant	RIC8B|p.P483R|1|0.5|ENSG00000111785|chr12:106860409-106860409|C/G|missense_variant	RIC8B|p.P483R|1|0.5|ENSG00000111785|chr12:106860409-106860409|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2741088867188	2	519.272355	1036.53016	1.4308	0.00074299	-0.57954	-0.00030094	0.85129	0.00044205	519.2720513270253	17.734	0.4816	17.734	17.662	18.143	0					23	13	4	0	0	0	0.57171	1	4328	4328		60.972	16.855	1	1829300			8780	22346	5079	5108	8941	8941					0.01335384295066433
EEYNNKVQL	9	Unmodified	_EEYNNKVQL_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.7833862304688	2	568.782753	1135.55095	1.7583	0.0010001	-0.2515	-0.00014305	1.5068	0.00085703	568.7822606243054	29.892	0.28643	29.892	29.812	30.098	0					14	7	3	0	0	0	0.12239	1	10721	10721		74.255	6.7614	1	236920			8781	4084	5080	5109	8942	8942					-0.011400701159118398
EEYPDRIM	8	Unmodified	_EEYPDRIM_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7405395507812	2	526.739499	1051.46445	5.271	0.0027764	-2.9809	-0.0015702	2.2901	0.0012063	526.7381281967849	33.816	0.12397	33.816	33.73	33.854	0					6	4	2	0	0	0	0.58597	1	11380	11380		51.335	15.717	1	35072			8782	7342	5081	5110	8943	8943					-0.05922772942130905
EEYPDRIM	8	Unmodified	_EEYPDRIM_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7394409179688	2	526.739499	1051.46445	0.95398	0.0005025	-0.93245	-0.00049116	0.021527	1.1339E-05	526.7391614777064	34.02	0.244	34.02	33.877	34.121	0					12	5	3	0	0	0	0.18319	1	13060	13060		152.47	72.531	1	372960			8783	7342	5081	5110	8944	8944					-0.05922772942130905
EEYPDRIM	8	Unmodified	_EEYPDRIM_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.739990234375	2	526.739499	1051.46445	0.63066	0.00033219	-0.08975	-4.7275E-05	0.54091	0.00028492	526.7395618591529	33.965	0.30546	33.965	33.812	34.118	0					17	6	4	0	0	0	0.44433	1	12954	12954		65.803	12.452	1	808790			8784	7342	5081	5110	8945	8945					-0.05922772942130905
EEYQRIYTT	9	Unmodified	_EEYQRIYTT_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.2893676757812	2	601.788035	1201.56152	-0.58454	-0.00035177	1.544	0.00092919	0.9595	0.00057742	601.7887629858388	29.25	0.1329	29.25	29.184	29.317	0					11	5	3	0	0	0	0.071197	1	9503	9503		87.754	10.98	1	90955			8785	3401	5082	5111	8946	8946					-0.031200874614796703
EEYQRIYTT	9	Unmodified	_EEYQRIYTT_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.7889404296875	2	601.788035	1201.56152	0.86182	0.00051863	0.25215	0.00015174	1.114	0.00067037	601.7882699655706	29.514	0.15359	29.514	29.412	29.565	0					9	3	3	0	0	0	0.0406	1	10952	10952		98.629	21.855	1	502930			8786	3401	5082	5111	8947	8947					-0.031200874614796703
EEYRAMPVV	9	Unmodified	_EEYRAMPVV_					0	0	0			REV__ENST00000574429.1_1_17:6544387-6544621:+|nuORF	REV__ENST00000574429.1_1_17:6544387-6544621:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.269287109375	2	547.270967	1092.52738	-1.5037	-0.00082292	-1.2237	-0.00066971	-2.7274	-0.0014926	547.2705547487698	18.924	0.14324	18.924	18.832	18.975	0					5	3	2	0	0	0	0.25109	1	5048	5048		55.504	9.532	1	104440	+		8787	20404	5083	5112	8948	8948					-0.015182071540948527
EEYRGRSL	8	Unmodified	_EEYRGRSL_					0	0	0		RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant;ENSG00000175718|ENST00000424776|RBMXL3	RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant	RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2567443847656	2	505.256705	1008.49886	-0.78093	-0.00039457	0.78153	0.00039488	0.00060955	3.0798E-07	505.2571343821941	21.137	0.13334	21.137	21.065	21.198	0					6	4	2	0	0	0	0.63077	1	6040	6040		44.117	3.3386	1	105700			8788	6571	5084	5113	8949	8949					-0.005051887389981857
EFAELPGPTKF	11	Unmodified	_EFAELPGPTKF_					0	0	0			REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant	REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	618.3182373046875	2	618.318971	1234.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.434	1	35.434	34.934	35.934	0								0	0	0	0.3769	1	13288	13288		41.427	0.64845	1		+		8789	13894	5085	5114	8950	8950					0.015462639576526271
EFAKDLFRK	9	Unmodified	_EFAKDLFRK_					0	0	0			REV__ENST00000518968.1_1_8:50652851-50653445:-|nuORF	REV__ENST00000518968.1_1_8:50652851-50653445:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	577.321044921875	2	577.321848	1152.62914	0.59065	0.00034099	-3.0109	-0.0017383	-2.4203	-0.0013973	577.3202361118263	24.431	0.21681	24.431	24.301	24.518	0					8	5	2	0	0	0	0.48389	1	7630	7630		34.173	6.2903	1	57662	+		8790	19933	5086	5115	8951	8951					0.058934072599640785
EFAPGGEKVQ	10	Unmodified	_EFAPGGEKVQ_					0	0	0			REV__ENST00000476499.1_1_10:24918849-25010828:-|nuORF	REV__ENST00000476499.1_1_10:24918849-25010828:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2677001953125	2	531.266739	1060.51892	0.38859	0.00020644	0.6386	0.00033927	1.0272	0.00054571	531.2670371944779	26.789	0.17048	26.789	26.708	26.879	0					9	6	2	0	0	0	0.56931	1	8188	8188		37.812	0.65241	1	51361	+		8791	12202	5087	5116	8952	8952					-0.008914377990549838
EFAPGGEKVQ	10	Unmodified	_EFAPGGEKVQ_					0	0	0			REV__ENST00000476499.1_1_10:24918849-25010828:-|nuORF	REV__ENST00000476499.1_1_10:24918849-25010828:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2667236328125	2	531.266739	1060.51892	0.11965	6.3567E-05	0.91705	0.0004872	1.0367	0.00055076	531.2673060418817	27.007	0.25097	27.007	26.835	27.086	0					11	6	2	0	0	0	0.38194	1	9391	9391		58.23	0.41864	1	434400	+		8792	12202	5087	5116	8953	8953					-0.008914377990549838
EFAQGVTSIIS	11	Unmodified	_EFAQGVTSIIS_					0	0	0			REV__ENSG00000129946|ENST00000264554|SHC2	REV__ENSG00000129946|ENST00000264554|SHC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.3015747070312	2	576.300778	1150.587	1.811	0.0010437	0.62302	0.00035904	2.434	0.0014027	576.3012750528219	24.352	0.26499	24.352	24.246	24.511	0					14	5	4	0	0	0	0.084047	1	8526	8526		93.598	9.9506	1	1341000	+		8793	14561	5088	5117	8954	8954					0.017733870609617952
EFAVIKPVSP	10	Unmodified	_EFAVIKPVSP_					0	0	0			REV__ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	REV__ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8118286132812	2	543.813325	1085.6121	-1.4916	-0.00081116	-1.2065	-0.00065613	-2.6981	-0.0014673	543.8126738647422	16.326	0.12447	16.326	16.253	16.377	0					5	3	2	0	0	0	0.2978	1	3856	3856		67.494	67.494	1	323340	+		8794	12134	5089	5118	8955	8955					0.07271486654190085
EFCCRPKKF	9	Unmodified	_EFCCRPKKF_					0	0	0			REV__ENST00000449297.6_1_6:56818586-56819281:-|nuORF	REV__ENST00000449297.6_1_6:56818586-56819281:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.2848510742188	2	579.283354	1156.55216	3.2548	0.0018854	0.046886	2.716E-05	3.3017	0.0019126	579.2835313676984	42.404	0.37587	42.404	42.323	42.699	0					23	10	3	0	0	0	0.27249	1	16909	16909		37.159	8.0096	1	429550	+		8795	19302	5090	5119	8956	8956					-0.019858505523643544
EFCRLRPL	8	Unmodified	_EFCRLRPL_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.288818359375	2	517.284211	1032.55387	3.3174	0.001716	3.0597	0.0015827	6.3771	0.0032988	517.2851353915635	41.93	0.29867	41.93	41.872	42.17	0					10	8	2	0	0	0	0.58597	1	16716	16716		40.573	0	1	53041			8796	1570	5091	5120	8957	8957					0.03889526527905218
EFDIASKVN	9	Unmodified	_EFDIASKVN_					0	0	0			REV__SRP54|p.L62F|1|0.11|ENSG00000100883|chr14:35000949-35000949|C/T|missense_variant	REV__SRP54|p.L62F|1|0.11|ENSG00000100883|chr14:35000949-35000949|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.76904296875	2	511.761289	1021.50803	1.42	0.00072671	3.5867	0.0018355	5.0067	0.0025622	511.7624268768407	28.469	1.2552	28.469	28.294	29.549	0					47	25	5	0	0	0	0.35021	1	10323	10323		45.972	3.4978	1	631520	+		8797	21603	5092	5121	8958	8958					-0.001868401733418068
EFDLAESDQ	9	Unmodified	_EFDLAESDQ_					0	0	0			REV__TUT1|p.A338Qfs*59|1|0.33|ENSG00000149016|chr11:62578709-62578709|C/-|frameshift_variant	REV__TUT1|p.A338Qfs*59|1|0.33|ENSG00000149016|chr11:62578709-62578709|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2225952148438	2	527.222194	1052.42983	0.10411	5.4888E-05	-1.1563	-0.00060963	-1.0522	-0.00055474	527.221625962504	11.854	0.47622	11.854	11.766	12.242	0					57	16	6	0	0	0	0.48389	1	2500	2500		34.173	6.2903	1	8737800	+		8798	15400	5093	5122	8959	8959					-0.09428317549236453
EFFCRDGFSR	10	Carbamidomethyl (C)	_EFFC(Carbamidomethyl (C))RDGFSR_	EFFC(1)RDGFSR		EFFC(83)RDGFSR		0	1	0		ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1	ENSG00000186684|ENST00000664447|CYP27C1	ENSG00000186684|ENST00000664447|CYP27C1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	660.7944946289062	2	660.793129	1319.5717	2.6731	0.0017664	-0.97269	-0.00064275	1.7004	0.0011236	660.7924715136888	27.484	0.47369	27.484	27.323	27.797	0					23	9	4	0	0	0	0.17315	1	9827	9827		82.75	9.8712	1	5484000			8799	7156	5094	5123	8960	8960	303				-0.07529803007901137
EFFGHIGVSP	10	Unmodified	_EFFGHIGVSP_					0	0	0		ENST00000531360.5_1_11:118992333-119002261:+|nuORF	ENST00000531360.5_1_11:118992333-119002261:+|nuORF	ENST00000531360.5_1_11:118992333-119002261:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.80712890625	2	545.271824	1088.5291	1.7597	0.00095953	-1.411	-0.00076939	0.3487	0.00019014	545.271518642035	30.354	0.2005	30.354	30.259	30.46	0					11	7	3	0	0	0	0.65213	1	9704	9704		27.882	1.0861	1	109120			8800	10435	5095	5124	8961	8961					-0.011628300738038888
EFFKNIPAL	9	Unmodified	_EFFKNIPAL_					0	0	0		tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8006591796875	2	539.800217	1077.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.217	1	39.217	38.717	39.717	0								0	0	0	0.1633	1	14922	14922		56.721	1.2168	1				8801	22839	5096	5125	8962	8962					0.05019217482708882
EFFTANII	8	Unmodified	_EFFTANII_					0	0	0			REV__nc|ENSG00000131355|Q9BY15-2|ADGRE3	REV__nc|ENSG00000131355|Q9BY15-2|ADGRE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.75115966796875	2	477.750193	953.485833	0.64539	0.00030834	2.3871	0.0011404	3.0325	0.0014488	477.7517229115995	38.105	0.27118	38.105	38.039	38.311	0					13	9	2	0	0	0	0.72381	1	14986	14986		30.504	3.7075	1	91940	+		8802	14617	5097	5126	8963	8963					0.007229801489074816
EFGAGAWAQ	9	Unmodified	_EFGAGAWAQ_					0	0	0			REV__nc|ENSG00000065989|P27815-2|PDE4A	REV__nc|ENSG00000065989|P27815-2|PDE4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.71392822265625	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.019	1	42.019	41.519	42.519	0								0	0	0	0.29774	1	16509	16509		35.618	0.41757	1		+		8803	20932	5098	5127	8964	8964					-0.056559342048103645
EFGYINHG	8	Unmodified	_EFGYINHG_					0	0	0			REV__POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant	REV__POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.71466064453125	2	468.714142	935.413731	-0.6851	-0.00032112	-0.043554	-2.0414E-05	-0.72865	-0.00034153	468.7140794811419	29.017	2.0789	29.017	28.88	30.958	0					107	54	4	0	0	0	0.68754	1	10034	10034		35.201	3.2459	1	4456300	+		8804	13614	5099	5128	8965	8965					-0.056559342048103645
EFHDTRLR	8	Unmodified	_EFHDTRLR_					0	0	0		ENST00000325076.9_1_20:34190424-34191756:-|nuORF	ENST00000325076.9_1_20:34190424-34191756:-|nuORF	ENST00000325076.9_1_20:34190424-34191756:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.278076171875	2	537.277972	1072.54139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.965	1	36.965	36.465	37.465	0								0	0	0	1.7419	1	13236	13236		37.159	0	1				8805	8639	5100	5129	8966	8966					0.008022063892212827
EFIKEKSAT	9	Unmodified	_EFIKEKSAT_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.784423828125	2	526.784764	1051.55498	2.2962	0.0012096	-2.8755	-0.0015148	-0.57935	-0.00030519	526.7835323573802	26.525	0.089249	26.525	26.459	26.548	0					5	3	2	0	0	0	0.41113	1	8076	8076		40.778	0	1	38257			8806	5806	5101	5130	8967	8967					0.03126019377805278
EFLAFIFLT	9	Unmodified	_EFLAFIFLT_					0	0	0			REV__ENST00000505284.5_1_4:128842916-128886288:-|nuORF	REV__ENST00000505284.5_1_4:128842916-128886288:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.5379943847656	3	367.539071	1099.59538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.59	1	19.59	19.09	20.09	0								0	0	0	0.36609	1	5349	5349		20.947	2.6848	1		+		8807	15957	5102	5131	8968	8968					0.04956985768217237
EFLERRERA	9	Unmodified	_EFLERRERA_					0	0	0		ENST00000513169.1_1_5:176738513-176738831:-|nuORF	ENST00000513169.1_1_5:176738513-176738831:-|nuORF	ENST00000513169.1_1_5:176738513-176738831:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	603.324951171875	2	603.322911	1204.63127	3.049	0.0018395	0.61518	0.00037115	3.6642	0.0022107	603.3232247091896	27.079	0.52422	27.079	26.968	27.493	0					19	10	3	0	0	0	0.20551	1	9665	9665		60.972	4.2509	1	926540			8808	10246	5103	5132	8969	8969					0.03713835997814385
EFLGGARGQE	10	Unmodified	_EFLGGARGQE_					0	0	0			REV__ENST00000510624.5_1_4:109087727-109087808:-|nuORF	REV__ENST00000510624.5_1_4:109087727-109087808:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2640991210938	2	532.261988	1062.50942	3.4095	0.0018148	0.87674	0.00046665	4.2863	0.0022814	532.2622271413578	36.553	1.2466	36.553	36.395	37.642	0					72	25	5	0	0	0	0.08194	1	14202	14202		98.582	18.869	1	15854000	+		8809	19869	5104	5133	8970	8970					-0.019332060845727028
EFLHGTKR	8	Unmodified	_EFLHGTKR_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.77410888671875	2	494.272158	986.529764	-0.45257	-0.00022369	-0.31036	-0.0001534	-0.76293	-0.0003771	494.2718614024626	30.968	0.44049	30.968	30.771	31.211	0					18	10	3	0	0	0	0.68432	1	11284	11284		35.618	3.6634	1	501010			8810	4282	5105	5134	8971	8971					0.03596009365901409
EFLLKQDVV	9	Unmodified	_EFLLKQDVV_					0	0	0		ENST00000564397.5_1_16:5078879-5079041:-|nuORF;nc|ENSG00000103174|Q9UK23-3|NAGPA;ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA	ENST00000564397.5_1_16:5078879-5079041:-|nuORF	ENST00000564397.5_1_16:5078879-5079041:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3099365234375	2	545.810782	1089.60701	1.9002	0.0010372	1.1681	0.00063755	3.0683	0.0016747	545.8119285430943	37.422	0.33137	37.422	37.328	37.659	0					27	10	3	0	0	0	0.40759	1	14709	14709		33.922	2.3918	1	541050			8811	2219	5106	5135	8972	8972					0.0657918279155183
EFLLVLVNL	9	Unmodified	_EFLLVLVNL_					0	0	0		TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.3245239257812	2	530.326068	1058.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.038	1	18.038	17.538	18.538	0								0	0	0	0.30504	1	4627	4627		12.959	0	1				8812	2221	5107	5136	8973	8973					0.11060961176622186
EFLNRVDEI	9	Unmodified	_EFLNRVDEI_					0	0	0		tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.7936401367188	2	567.793121	1133.57169	0.11947	6.7833E-05	1.7099	0.00097086	1.8294	0.0010387	567.7941767983925	20.367	0.17697	20.367	20.326	20.503	0					8	5	2	0	0	0	0.55379	1	5685	5685		26.693	1.1189	1	83071			8813	22999	5108	5137	8974	8974					0.010245202637634065
EFLRALLS	8	Unmodified	_EFLRALLS_					0	0	0			REV__ENSG00000177706|ENST00000313766|FAM20C	REV__ENSG00000177706|ENST00000313766|FAM20C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7793273925781	2	474.779285	947.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.307	1	44.307	43.807	44.807	0								0	0	0	1.7419	1	17262	17262		44.117	6.9577	1		+		8814	16709	5109	5138	8975	8975					0.06814661794192034
EFLTDAMQ	8	Unmodified	_EFLTDAMQ_					0	0	0			REV__SNAP91|p.L110Wfs*15|1|0.38|ENSG00000065609|chr6:83662367-83662367|A/-|frameshift_variant	REV__SNAP91|p.L110Wfs*15|1|0.38|ENSG00000065609|chr6:83662367-83662367|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7153015136719	2	477.715493	953.416433	0.4059	0.0001939	-0.78099	-0.00037309	-0.37509	-0.00017919	477.71529206647097	24.538	0.22006	24.538	24.45	24.67	0					9	5	2	0	0	0	0.72381	1	8288	8288		30.504	0	1	263130	+		8815	13119	5110	5139	8976	8976					-0.06213846862169703
EFLTKTAKF	9	Unmodified	_EFLTKTAKF_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.8057861328125	2	542.8055	1083.59645	2.0454	0.0011102	-1.2596	-0.0006837	0.78583	0.00042655	542.8048524837391	31.614	0.34713	31.614	31.513	31.861	0					11	7	2	0	0	0	0.15163	1	11950	11950		67.494	14.142	1	499970			8816	8103;2063	5111	5140	8977	8977					0.05799200137130356
EFLTKTAKF	9	Unmodified	_EFLTKTAKF_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.805908203125	2	542.8055	1083.59645	2.0235	0.0010984	-0.55712	-0.00030241	1.4664	0.00079597	542.8051718118733	31.563	0.46456	31.563	31.353	31.818	0					14	9	2	0	0	0	0.0080613	1	11827	11827		145.16	51.96	1	856010			8817	8103;2063	5111	5140	8978	8978					0.05799200137130356
EFMKTLEK	8	Unmodified	_EFMKTLEK_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7717895507812	2	513.270435	1024.52632	-0.46795	-0.00024018	-0.6549	-0.00033614	-1.1229	-0.00057633	513.2702370324791	15.501	0.41314	15.501	15.306	15.719	0					18	8	3	0	0	0	0.44767	1	4195	4195		65.465	2.1591	1	4220900			8818	6515	5112	5141	8979	8979					0.015035784770361715
EFNCSVER	8	Unmodified	_EFNCSVER_					0	0	0			REV__nc|ENSG00000177943|Q6UXC1-3|MAMDC4	REV__nc|ENSG00000177943|Q6UXC1-3|MAMDC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2162780761719	2	492.216192	982.41783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.204	1	36.204	35.704	36.704	0								0	0	0	1.7419	1	13636	13636		31.53	3.6476	1		+		8819	16715	5113	5142	8980	8980					-0.07408212773407286
EFNIEKGQ	8	Unmodified	_EFNIEKGQ_					0	0	0		ENST00000545001.2_1_12:64732273-64732573:-|nuORF	ENST00000545001.2_1_12:64732273-64732573:-|nuORF	ENST00000545001.2_1_12:64732273-64732573:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.73736572265625	2	482.740357	963.46616	-2.9202	-0.0014097	-3.191	-0.0015404	-6.1112	-0.0029501	482.7387544748199	15.336	0.081882	15.336	15.293	15.375	0					4	2	2	0	0	0	0.78978	1	3426	3426		21.96	4.5949	1	300140			8820	10571	5114	5143	8981	8981					-0.017033958618412726
EFNQETGLLL	10	Unmodified	_EFNQETGLLL_					0	0	0			REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF	REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.3025512695312	2	582.300778	1162.587	3.2327	0.0018824	1.2325	0.00071769	4.4652	0.0026001	582.3014169677738	42.13	0.24274	42.13	42.053	42.296	0					9	6	2	0	0	0	0.2538	1	16802	16802		72.879	6.45	1	109620	+		8821	19461	5115	5144	8982	8982					0.012213870609684818
EFNTVVKL	8	Unmodified	_EFNTVVKL_					0	0	0		LMOD1|p.A365T|1|0.35|ENSG00000163431|chr1:201899920-201899920|C/T|missense_variant;nc|ENSG00000163431|P29536-2|LMOD1;ENSG00000163431|ENST00000367288|LMOD1	LMOD1|p.A365T|1|0.35|ENSG00000163431|chr1:201899920-201899920|C/T|missense_variant	LMOD1|p.A365T|1|0.35|ENSG00000163431|chr1:201899920-201899920|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.26971435546875	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.739	1	23.739	23.239	24.239	0								0	0	0	1.7419	1	7901	7901		45.952	7.1458	1				8822	5554	5116	5145	8983	8983					0.05170955557275647
EFPQINYQK	9	Unmodified	_EFPQINYQK_					0	0	0		ENSG00000116745|ENST00000262340|RPE65	ENSG00000116745|ENST00000262340|RPE65	ENSG00000116745|ENST00000262340|RPE65	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.7966918945312	2	583.795663	1165.57677	3.2215	0.0018807	-0.17269	-0.00010082	3.0488	0.0017799	583.7956607272545	43.019	0.81248	43.019	42.573	43.385	0					50	25	3	0	0	0	0.54267	1	17293	17293		27.882	0	1	377650			8823	3000	5117	5146	8984	8984					0.000608241263535092
EFPSRNKLF	9	Unmodified	_EFPSRNKLF_					0	0	0		ENST00000509626.1_1_5:34954007-34954816:+|nuORF;ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENST00000509626.1_1_5:34954007-34954816:+|nuORF	ENST00000509626.1_1_5:34954007-34954816:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.30712890625	2	569.306198	1136.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.336	1	45.336	44.836	45.836	0								0	0	0	0.31838	1	16883	16883		31.53	3.6476	1				8824	6114	5118	5147	8985	8985					0.035008342259061465
EFPTSISACLS	11	Unmodified	_EFPTSISACLS_					0	0	0		ENST00000354234.8_1_13:50018777-50018888:+|nuORF	ENST00000354234.8_1_13:50018777-50018888:+|nuORF	ENST00000354234.8_1_13:50018777-50018888:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.7720947265625	2	577.773539	1153.53253	1.7223	0.00099508	-2.9742	-0.0017184	-1.2519	-0.00072332	577.7716136585353	38.534	0.18251	38.534	38.445	38.628	0					8	6	2	0	0	0	0.63225	1	15131	15131		31.53	11.533	1	95929			8825	8782	5119	5148	8986	8986					-0.03809948082130177
EFQDPIQQ	8	Unmodified	_EFQDPIQQ_					0	0	0			REV__DCDC1|p.N526Mfs*10|1|0.2|ENSG00000170959|chr11:30905013-30905013|T/-|frameshift_variant	REV__DCDC1|p.N526Mfs*10|1|0.2|ENSG00000170959|chr11:30905013-30905013|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.73876953125	2	502.737814	1003.46108	2.9301	0.0014731	-2.4358	-0.0012246	0.4943	0.0002485	502.73744775890043	11.899	0.61873	11.899	11.797	12.415	0					42	18	5	0	0	0	0.57171	1	2376	2376		52.937	1.744	1	5472500	+		8826	12674	5120	5149	8987	8987					-0.04051699724482205
EFQNLCEKR	9	Unmodified	_EFQNLCEKR_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-5|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.7882080078125	2	583.784773	1165.55499	3.2216	0.0018807	0.47645	0.00027814	3.6981	0.0021589	583.7847507251039	28.32	0.51474	28.32	28.126	28.641	0					24	10	3	0	0	0	0.12834	1	10289	10289		72.879	1.0018	1	682400			8827	7175	5121	5150	8988	8988					-0.02116303893831173
EFQSPKYIF	9	Unmodified	_EFQSPKYIF_					0	0	0		ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	ENST00000468472.1_1_3:52853923-52864679:-|nuORF	ENST00000468472.1_1_3:52853923-52864679:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7966918945312	2	579.795132	1157.57571	3.251	0.0018849	-0.18289	-0.00010604	3.0681	0.0017789	579.7950368676137	43.515	0.38695	43.515	43.378	43.765	0					34	12	4	0	0	0	0.055856	1	17387	17387		93.195	8.2799	1	906240			8828	1285	5122	5151	8989	8989					0.003226097574497544
EFRAPRFECCH	11	Unmodified	_EFRAPRFECCH_					0	0	0			REV__ENST00000506043.1_1_X:77218054-77218261:+|nuORF	REV__ENST00000506043.1_1_X:77218054-77218261:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	697.8058471679688	2	697.808256	1393.60196	-2.453	-0.0017118	-0.60223	-0.00042024	-3.0553	-0.002132	697.8077473930466	16.803	0.29704	16.803	16.734	17.031	0					21	8	3	0	0	0	0.21827	1	4062	4062		72.879	28.502	1	994470	+		8829	19837	5123	5152	8990	8990					-0.07909767614319207
EFRAPRFECCH	11	Unmodified	_EFRAPRFECCH_					0	0	0			REV__ENST00000506043.1_1_X:77218054-77218261:+|nuORF	REV__ENST00000506043.1_1_X:77218054-77218261:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	697.8058471679688	2	697.808256	1393.60196	-2.4534	-0.001712	-1.3345	-0.00093122	-3.7878	-0.0026432	697.8074278237375	17.732	0.32963	17.732	17.672	18.002	0					17	7	5	0	0	0	0.37395	1	4489	4489		53.089	15.581	1	1551200	+		8830	19837	5123	5152	8991	8991					-0.07909767614319207
EFRQSVEAL	9	Unmodified	_EFRQSVEAL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7786254882812	2	539.780013	1077.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.13	1	12.13	11.63	12.63	0								0	0	0	0.35507	1	2654	2654		24.203	0	1		+		8831	14494;21013	5124	5153	8992	8992					0.009802510922781948
EFSGRDTID	9	Unmodified	_EFSGRDTID_					0	0	0			REV__nc|ENSG00000134533|Q96A58-2|RERG	REV__nc|ENSG00000134533|Q96A58-2|RERG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2384643554688	2	520.238178	1038.4618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.573	1	24.573	24.073	25.073	0								0	0	0	0.37233	1	7273	7273		19.104	1.7386	1		+		8832	14750	5125	5154	8993	8993					-0.05588905075433104
EFSGSAGRRR	10	Unmodified	_EFSGSAGRRR_					0	0	0		ENST00000229395.7_1_12:27091398-27091527:+|nuORF	ENST00000229395.7_1_12:27091398-27091527:+|nuORF	ENST00000229395.7_1_12:27091398-27091527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7935791015625	2	561.791778	1121.569	0.12872	7.2314E-05	-0.64645	-0.00036317	-0.51773	-0.00029086	561.7936395765753	31.429	0.15973	31.429	31.4	31.56	0					10	6	2	0	0	0	0.52275	1	10420	10420		42.864	4.1107	1	87831			8833	8195	5126	5155	8994	8994					0.013081096494715894
EFSTIAENKQ	10	Unmodified	_EFSTIAENKQ_					0	0	0			REV__ENST00000393448.6_1_5:179018652-179028988:+|nuORF	REV__ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.7847290039062	2	583.788035	1165.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.12	1	28.12	27.62	28.62	0								0	0	0	0.31444	1	9290	9290		36.447	0	1		+		8834	16669	5127	5156	8995	8995					-0.014640874614769928
EFTGHQAF	8	Unmodified	_EFTGHQAF_					0	0	0			REV__SFPQ|p.Y488H|1|0.28|ENSG00000116560|chr1:35189336-35189336|A/G|missense_variant	REV__SFPQ|p.Y488H|1|0.28|ENSG00000116560|chr1:35189336-35189336|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7140808105469	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.667	1	40.667	40.167	41.167	0								0	0	0	1.7419	1	16029	16029		31.955	1.4512	1		+		8835	14147	5128	5157	8996	8996					-0.056559342048103645
EFTKDIARC	9	Unmodified	_EFTKDIARC_					0	0	0		nc|ENSG00000256407|Q6IPT4-3|CYB5RL;ENST00000490863.5_1_1:54640294-54649992:-|nuORF;ENST00000528287.5_1_1:54640294-54656520:-|nuORF;nc|ENSG00000256407|Q6IPT4-4|CYB5RL;ENSG00000215883|ENST00000534324|CYB5RL	nc|ENSG00000256407|Q6IPT4-3|CYB5RL	nc|ENSG00000256407|Q6IPT4-3|CYB5RL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7713623046875	2	541.768591	1081.52263	2.0532	0.0011124	1.2625	0.00068399	3.3157	0.0017964	541.7692242426205	43.915	0.43662	43.915	43.625	44.062	0					20	14	2	0	0	0	0.44593	1	17571	17571		37.812	0.65241	1	82509			8836	7836	5129	5158	8997	8997					-0.014870912968262928
EFVTKGVN	8	Unmodified	_EFVTKGVN_					0	0	0			REV__ENSG00000204262|ENST00000374866|COL5A2	REV__ENSG00000204262|ENST00000374866|COL5A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2400207519531	2	447.239993	892.465432	-0.42842	-0.00019161	-0.017724	-7.927E-06	-0.44615	-0.00019953	447.23994663867745	25.676	0.26575	25.676	25.514	25.78	0					7	4	2	0	0	0	0.70598	1	9035	9035		32.812	2.3088	1	174800	+		8837	17472	5130	5159	8998	8998					0.01489809489100935
EFWQTSAV	8	Unmodified	_EFWQTSAV_					0	0	0			REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2301940917969	2	484.229625	966.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.34	1	29.34	28.84	29.84	0								0	0	0	1.7419	1	9857	9857		39.253	2.0937	1		+		8838	21821	5131	5160	8999	8999					-0.03986780890568298
EFYNNIQRTAS	11	Unmodified	_EFYNNIQRTAS_					0	0	0		ENST00000533836.1_1_1:52522019-52536962:+|nuORF	ENST00000533836.1_1_1:52522019-52536962:+|nuORF	ENST00000533836.1_1_1:52522019-52536962:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.2170104980469	3	448.217719	1341.63133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.2	1	15.2	14.7	15.7	0								0	0	0	0.45674	1	3261	3261		22.562	8.4756	1				8839	10467	5132	5161	9000	9000					-0.025822087928645487
EGAAESGAQRA	11	Unmodified	_EGAAESGAQRA_					0	0	0			REV__ENST00000512795.1_2_5:180043993-180046337:-|nuORF	REV__ENST00000512795.1_2_5:180043993-180046337:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.782958984375	2	523.746702	1045.47885	0.090235	4.726E-05	-0.24022	-0.00012582	-0.14999	-7.8556E-05	523.7474469817649	14.18	0.091028	14.18	14.132	14.223	0					6	2	3	0	0	0	0.12944	1	3391	3391		82.75	0.50997	1	146860	+		8840	19843	5133	5162	9001	9001					-0.04206984469624331
EGAAGRPAPRT	11	Unmodified	_EGAAGRPAPRT_					0	0	0			REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	361.52703857421875	3	361.528228	1081.56285	0.11153	4.0323E-05	-3.3067	-0.0011955	-3.1952	-0.0011552	361.527147798562	25.741	0.20964	25.741	25.699	25.909	0					5	3	2	0	0	0	0.69004	1	7784	7784		28.577	1.827	1	66718	+		8841	19347	5134	5163	9002	9002					0.02533591417932257
EGAAIKREE	9	Unmodified	_EGAAIKREE_					0	0	0			REV__NME8|p.R175Kfs*15|1|0.35|ENSG00000086288|chr7:37864412-37864413|-/A|frameshift_variant	REV__NME8|p.R175Kfs*15|1|0.35|ENSG00000086288|chr7:37864412-37864413|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7646789550781	2	501.764363	1001.51417	0.14377	7.2139E-05	0.97116	0.00048729	1.1149	0.00055943	501.76478510816605	17.415	0.073967	17.415	17.376	17.45	0					4	2	2	0	0	0	0.12239	1	4342	4342		74.255	4.6274	1	188230	+		8842	13364	5135	5164	9003	9003					0.013476780581868297
EGAAKLLW	8	Unmodified	_EGAAKLLW_					0	0	0		ENSG00000163938|ENST00000418458|GNL3;nc|ENSG00000163938|Q9BVP2-2|GNL3;ENST00000497356.1_1_3:52727208-52727346:+|nuORF	ENSG00000163938|ENST00000418458|GNL3	ENSG00000163938|ENST00000418458|GNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2549133300781	2	444.252903	886.491253	3.1991	0.0014212	0.47545	0.00021122	3.6746	0.0016324	444.2531517601155	30.321	0.3514	30.321	30.171	30.523	0					17	11	2	0	0	0	0.65276	1	9925	9925		40.573	8.6178	1	240500			8843	5630	5136	5165	9004	9004					0.0434670373138033
EGAARHER	8	Unmodified	_EGAARHER_					0	0	0			REV__nc|ENSG00000152092|O14525|ASTN1	REV__nc|ENSG00000152092|O14525|ASTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.23455810546875	2	463.233565	924.452576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.05	1	24.05	23.55	24.55	0								0	0	0	1.7419	1	8368	8368		44.117	3.3386	1		+		8844	21065	5137	5166	9005	9005					-0.012672088504359635
EGADEASVNR	10	Unmodified	_EGADEASVNR_					0	0	0			REV__FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant	REV__FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2405395507812	2	524.238709	1046.46287	0.079267	4.1555E-05	2.4622	0.0012908	2.5414	0.0013323	524.2398516255743	15.046	0.26774	15.046	14.862	15.13	0					11	5	3	0	0	0	0.47859	1	4037	4037		47.657	8.8512	1	441290	+		8845	15767	5138	5167	9006	9006					-0.05850690706529349
EGAEKGKVV	9	Unmodified	_EGAEKGKVV_					0	0	0			REV__ENSG00000169896|ENST00000544665|ITGAM	REV__ENSG00000169896|ENST00000544665|ITGAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.75860595703125	2	458.758549	915.502546	0.088153	4.0441E-05	-0.8609	-0.00039494	-0.77274	-0.0003545	458.75808204906355	21.677	0.16766	21.677	21.608	21.776	0					8	4	2	0	0	0	0.42902	1	6319	6319		39.253	0	1	137150	+		8846	16341	5139	5168	9007	9007					0.04141481034866956
EGAGGGISLI	10	Unmodified	_EGAGGGISLI_					0	0	0			REV__ENST00000467390.5_1_2:138722061-138759907:+|nuORF	REV__ENST00000467390.5_1_2:138722061-138759907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2374572753906	2	437.23745	872.460347	-0.56056	-0.0002451	0.57344	0.00025073	0.012882	5.6326E-06	437.237633860904	22.999	0.21434	22.999	22.839	23.053	0					8	4	3	0	0	0	0.39566	1	7747	7747		56.721	9.0637	1	192450	+		8847	15445	5140	5169	9008	9008					0.019015056264720442
EGAGPGVRVLF	11	Unmodified	_EGAGPGVRVLF_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.30810546875	2	551.306198	1100.59784	3.7082	0.0020444	0.75864	0.00041824	4.4669	0.0024626	551.3065171003428	52.163	0.31983	52.163	52.067	52.387	0					37	19	3	0	0	0	0.3865	1	20295	20295		52.937	1.6012	1	215010	+		8848	13319	5141	5170	9009	9009					0.051568342258860866
EGAGSSALKR	10	Unmodified	_EGAGSSALKR_					0	0	0		ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP	ENSG00000165209|ENST00000348403|STRBP	ENSG00000165209|ENST00000348403|STRBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	325.8453674316406	3	325.845446	974.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.142	1	14.142	13.642	14.642	0								0	0	0	0.4201	1	3452	3452		20.03	0.033703	1				8849	5774	5142	5171	9010	9010					0.026230977780414833
EGAKVRITKL	10	Unmodified	_EGAKVRITKL_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.23638916015625	3	372.236274	1113.68699	0.89408	0.00033281	-0.56915	-0.00021186	0.32493	0.00012095	372.2360944830048	20.772	0.26777	20.772	20.662	20.93	0					11	5	3	0	0	0	0.53919	1	6797	6797		41.08	4.6333	1	1648100	+		8850	16086	5143	5172	9011	9011					0.1346966918540602
EGALEGRLLAV	11	Unmodified	_EGALEGRLLAV_					0	0	0			REV__ENST00000596902.1_1_19:44005819-44008744:-|nuORF	REV__ENST00000596902.1_1_19:44005819-44008744:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	376.8851623535156	3	376.552151	1126.63462	-1.0856	-0.00040878	-1.456	-0.00054826	-2.5416	-0.00095704	376.5515684604848	12.713	0.17316	12.713	12.595	12.768	0					16	10	2	0	0	0	0.77007	1	2521	2521		24.232	4.235	1	53910	+		8851	16659	5144	5173	9012	9012					0.07637086051818187
EGAPWQSIL	9	Unmodified	_EGAPWQSIL_					0	0	0			REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant	REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7584533691406	2	500.758549	999.502546	-0.60191	-0.00030141	0.38423	0.00019241	-0.21768	-0.000109	500.75885271487584	26.753	0.21754	26.753	26.644	26.862	0					7	4	2	0	0	0	0.25716	1	9623	9623		54.776	7.119	1	244830	+		8852	21378	5145	5174	9013	9013					0.002774810348682877
EGARLGPRGE	10	Unmodified	_EGARLGPRGE_					0	0	0			REV__ENST00000561543.5_1_15:52971390-52971552:-|nuORF	REV__ENST00000561543.5_1_15:52971390-52971552:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2786865234375	2	521.275429	1040.53631	1.4955	0.00077955	3.4073	0.0017762	4.9028	0.0025557	521.2773280874468	26.933	0.20382	26.933	26.85	27.054	0					11	6	3	0	0	0	0.64646	1	8245	8245		17.468	0	1	66247	+		8853	20296	5146	5175	9014	9014					0.0176590252663118
EGARRTEVQ	9	Unmodified	_EGARRTEVQ_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1;REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant	REV__nc|ENSG00000196218|P21817-2|RYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2726440429688	2	523.272887	1044.53122	-0.010078	-5.2735E-06	-0.48655	-0.0002546	-0.49663	-0.00025987	523.2726004562419	15.508	0.2168	15.508	15.4	15.617	0					7	4	2	0	0	0	0.48389	1	4264	4264		34.173	0.65696	1	1185300	+		8854	17234;21482	5147	5176	9015	9015					0.010735986639929251
EGARTCVILM	10	Unmodified	_EGARTCVILM_					0	0	0			REV__ENST00000298251.4_1_11:124805898-124805979:-|nuORF	REV__ENST00000298251.4_1_11:124805898-124805979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2806396484375	2	546.780644	1091.54674	-1.5034	-0.00082204	2.1033	0.0011501	0.59992	0.00032802	547.28273052841	28.348	0.38357	28.348	28.176	28.56	0					19	9	3	0	0	0	0.58308	1	9372	9372		24.519	0	1	328300	+		8855	18191	5148	5177	9016	9016					0.004624258651801938
EGASKSKIE	9	Unmodified	_EGASKSKIE_					0	0	0			REV__ENST00000490827.1_1_10:62631931-62634780:-|nuORF	REV__ENST00000490827.1_1_10:62631931-62634780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.75323486328125	2	474.753464	947.492375	0.61394	0.00029147	0.25043	0.00011889	0.86437	0.00041036	474.75364469222086	21.216	0.31337	21.216	21.011	21.324	0					16	6	4	0	0	0	0.11898	1	7040	7040		75.043	1.0686	1	1102200	+		8856	19714	5149	5178	9017	9017					0.016528733096379256
EGASPNHTF	9	Unmodified	_EGASPNHTF_					0	0	0		ENST00000524227.5_1_8:41525962-41555361:-|nuORF	ENST00000524227.5_1_8:41525962-41555361:-|nuORF	ENST00000524227.5_1_8:41525962-41555361:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2144470214844	2	480.214506	958.414459	-0.49662	-0.00023849	-0.25693	-0.00012338	-0.75356	-0.00036187	480.2144204559421	26.159	0.1659	26.159	26.051	26.217	0					6	3	2	0	0	0	0.2873	1	9318	9318		51.335	5.3632	1	116120			8857	10340	5150	5179	9018	9018					-0.06641139555756581
EGAVIVDGIKL	11	Unmodified	_EGAVIVDGIKL_					0	0	0			REV__tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	REV__tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.3303833007812	2	557.329339	1112.64412	0.11817	6.586E-05	1.124	0.00062646	1.2422	0.00069232	557.3299502086637	35.289	0.18801	35.289	35.212	35.4	0					20	8	3	0	0	0	0.10275	1	11920	11920		89.029	9.9588	1	286980	+		8858	22066	5151	5180	9019	9019					0.0923085433732922
EGAVSSPHGFS	11	Unmodified	_EGAVSSPHGFS_					0	0	0			REV__ENSG00000021826|ENST00000233072|CPS1	REV__ENSG00000021826|ENST00000233072|CPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7466430664062	2	537.74617	1073.47779	1.9948	0.0010727	-1.6789	-0.00090283	0.31592	0.00016989	537.7452589700844	28.852	0.16768	28.852	28.741	28.909	0					8	3	3	0	0	0	0.37008	1	10514	10514		54.776	3.5836	1	1215000	+		8859	12939	5152	5181	9020	9020					-0.05601198838508026
EGDARWVL	8	Unmodified	_EGDARWVL_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.24395751953125	2	473.243067	944.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.554	1	20.554	20.054	21.054	0								0	0	0	1.7419	1	5801	5801		40.573	3.4135	1		+		8860	14100	5153	5182	9021	9021					-0.0028767227937578355
EGDCNWSSNS	10	Unmodified	_EGDCNWSSNS_					0	0	0			REV__nc|ENSG00000100422|Q8TCT0-2|CERK	REV__nc|ENSG00000100422|Q8TCT0-2|CERK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.6937255859375	2	549.693278	1097.372	0.34404	0.00018912	-2.0695	-0.0011376	-1.7255	-0.00094847	549.692580061666	39.598	0.21199	39.598	39.524	39.736	0					20	11	3	0	0	0	0.71484	1	13299	13299		19.997	0.6368	1	165510	+		8861	13551	5154	5183	9022	9022					-0.17278902746306812
EGDGEEGLQ	9	Unmodified	_EGDGEEGLQ_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.D1643Tfs*9|1|0.12|ENSG00000185567|chr14:104950524-104950524|C/-|frameshift_variant;AHNAK2|p.P2536Lfs*14|1|0.11|ENSG00000185567|chr14:104947844-104947844|G/-|frameshift_variant;AHNAK2|p.D983Tfs*9|1|0.16|ENSG00000185567|chr14:104952504-104952504|C/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.1929931640625	2	467.193436	932.37232	0.65229	0.00030474	-0.741	-0.00034619	-0.08871	-4.1445E-05	467.1930463247546	51.765	0.40077	51.765	51.458	51.859	0					25	24	2	0	0	0	0.54267	1	19145	19145		27.882	10.517	1	242190			8862	7088	5155	5184	9023	9023					-0.09657159754794975
EGDLRLTGR	9	Unmodified	_EGDLRLTGR_					0	0	0		ENST00000299767.9_1_12:104324213-104324297:+|nuORF	ENST00000299767.9_1_12:104324213-104324297:+|nuORF	ENST00000299767.9_1_12:104324213-104324297:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7778015136719	2	508.777805	1015.54106	-0.021647	-1.1013E-05	-0.14687	-7.4726E-05	-0.16852	-8.574E-05	508.77784219021686	19.481	0.13298	19.481	19.389	19.522	0					10	3	4	0	0	0	0.39215	1	5891	5891		42.396	1.8235	1	270480			8863	8479	5156	5185	9024	9024					0.03390786669365298
EGDQGPQGPQG	11	Unmodified	_EGDQGPQGPQG_					0	0	0		ENSG00000092758|ENST00000649368|COL9A3;ENST00000467819.5_1_20:61467799-61472081:+|nuORF;ENST00000466192.5_1_20:61463352-61472081:+|nuORF	ENSG00000092758|ENST00000649368|COL9A3	ENSG00000092758|ENST00000649368|COL9A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2311401367188	2	535.230884	1068.44722	1.804	0.00096554	-1.0981	-0.00058773	0.70588	0.00037781	535.2303930699497	16.217	0.567	16.217	16.013	16.58	0					24	11	4	0	0	0	0.1937	1	4580	4580		75.043	1.0686	1	967350			8864	1877	5157	5186	9025	9025					-0.08426977223552967
EGDSRFLRK	9	Unmodified	_EGDSRFLRK_					0	0	0			REV__nc|ENSG00000135540|Q5SYE7|NHSL1	REV__nc|ENSG00000135540|Q5SYE7|NHSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.296875	2	554.298904	1106.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.769	1	11.769	11.269	12.269	0								0	0	0	0.077333	1	2337	2337		44.377	12.847	1		+		8865	21031	5158	5187	9026	9026					0.0342276207775285
EGEEASYD	8	Unmodified	_EGEEASYD_					0	0	0			REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.67254638671875	2	450.166887	898.319221	2.5391	0.001143	1.7788	0.00080078	4.318	0.0019438	450.1663391924883	49.885	0.27366	49.885	49.751	50.025	0					31	11	4	0	0	0	0.79719	1	19693	19693		18.324	0	1	195450	+		8866	15214	5159	5188	9027	9027					-0.13400537537461332
EGEEGLRAWT	10	Unmodified	_EGEEGLRAWT_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.18426513671875	3	383.184127	1146.53055	0.83826	0.00032121	-0.76043	-0.00029139	0.077831	2.9824E-05	383.18394885836847	27.977	1.9579	27.977	27.419	29.377	0					73	48	3	0	0	0	0.65895	1	9746	9746		27.047	0	1	196700			8867	4868	5160	5189	9028	9028					-0.03685240775712373
EGEGAQIKA	9	Unmodified	_EGEGAQIKA_					0	0	0			REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7323303222656	2	451.732532	901.45051	-0.40836	-0.00018447	-0.30628	-0.00013835	-0.71464	-0.00032282	451.73238210879026	15.608	0.45079	15.608	15.364	15.815	0					17	9	3	0	0	0	0.087861	1	4139	4139		82.241	7.1972	1	350250	+		8868	12770	5161	5190	9029	9029					-0.0041568237888895965
EGEGCQWI	8	Unmodified	_EGEGCQWI_					0	0	0			REV__ENST00000597731.1_1_19:39329605-39330760:-|nuORF	REV__ENST00000597731.1_1_19:39329605-39330760:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.1912536621094	2	461.192185	920.369817	-0.87205	-0.00040218	-1.7885	-0.00082485	-2.6606	-0.001227	461.19160474853794	11.456	0.22496	11.456	11.281	11.506	0					16	7	3	0	0	0	0.75243	1	2317	2317		26.796	1.3459	1	285650	+		8869	20578	5162	5191	9030	9030					-0.0935528669346013
EGEGGGRRPR	10	Unmodified	_EGEGGGRRPR_					0	0	0			REV__ENST00000606277.1_1_1:41157297-41157681:-|nuORF	REV__ENST00000606277.1_1_1:41157297-41157681:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.777587890625	2	535.776128	1069.5377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.048	1	50.048	49.548	50.548	0								0	0	0	0.41967	1	19775	19775		24.519	0.31644	1		+		8870	20615	5163	5192	9031	9031					0.005715366153708601
EGEGISKVQR	10	Unmodified	_EGEGISKVQR_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7964477539062	2	551.796195	1101.57784	1.6254	0.00089687	-0.90372	-0.00049867	0.72164	0.0003982	551.7954501746376	27.313	0.65768	27.313	27.055	27.713	0					18	13	2	0	0	0	0.46128	1	9893	9893		49.536	1.8787	1	799260			8871	2469	5164	5193	9032	9032					0.031110384952853565
EGEKVRGLY	9	Unmodified	_EGEKVRGLY_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.78369140625	2	525.782556	1049.55056	0.097816	5.143E-05	1.4577	0.00076644	1.5555	0.00081787	525.7831913345616	34.514	0.29082	34.514	34.361	34.652	0					14	7	2	0	0	0	0.37197	1	12860	12860		44.117	1.7207	1	114680			8872	5113	5165	5194	9033	9033					0.02776554954925814
EGELHSKDLE	10	Unmodified	_EGELHSKDLE_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.2763061523438	2	578.777667	1155.54078	-0.055433	-3.2083E-05	-2.0639	-0.0011946	-2.1194	-0.0012266	578.7762644077571	41.137	0.24763	41.137	41.002	41.25	0					18	11	2	0	0	0	0.50287	1	15632	15632		45.022	12.21	1	64331	+		8873	17260	5166	5195	9034	9034					-0.030766778411361884
EGENRIEVL	9	Unmodified	_EGENRIEVL_					0	0	0		nc|ENSG00000135362|Q6MZQ0-4|PRR5L;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF;ENSG00000135362|ENST00000530639|PRR5L	nc|ENSG00000135362|Q6MZQ0-4|PRR5L	nc|ENSG00000135362|Q6MZQ0-4|PRR5L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7753295898438	2	529.77747	1057.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.089	1	14.089	13.589	14.589	0								0	0	0	0.27939	1	3578	3578		39.253	2.0937	1				8874	3986	5167	5196	9035	9035					0.013919472296720414
EGEQIRAFK	9	Unmodified	_EGEQIRAFK_					0	0	0		nc|ENSG00000030419|Q9UKS7-8|IKZF2;ENST00000484040.1_1_2:213872086-213878776:-|nuORF;nc|ENSG00000030419|Q9UKS7-4|IKZF2;nc|ENSG00000030419|Q9UKS7-7|IKZF2;ENST00000412444.5_1_2:213872086-213945912:-|nuORF;nc|ENSG00000030419|Q9UKS7-2|IKZF2;ENSG00000030419|ENST00000434687|IKZF2	nc|ENSG00000030419|Q9UKS7-8|IKZF2	nc|ENSG00000030419|Q9UKS7-8|IKZF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.28857421875	2	539.288005	1076.56146	0.30239	0.00016308	-0.37785	-0.00020377	-0.075453	-4.0691E-05	539.2878760230751	26.35	0.21166	26.35	26.249	26.46	0					7	4	2	0	0	0	0.44593	1	9432	9432		37.812	0.65241	1	172970			8875	1148	5168	5197	9036	9036					0.026239573292059504
EGERKGNVY	9	Unmodified	_EGERKGNVY_					0	0	0			REV__tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	REV__tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.17803955078125	3	351.177084	1050.50942	-0.70272	-0.00024678	3.3225	0.0011668	2.6198	0.00092002	351.1784635601084	22.579	0.10251	22.579	22.494	22.596	0					5	3	2	0	0	0	0.61124	1	6666	6666		35.618	16.258	1	60700	+		8876	21694	5169	5198	9037	9037					-0.01381206084556652
EGERRLNL	8	Unmodified	_EGERRLNL_					0	0	0		ENST00000456969.2_1_X:75555899-75556166:-|nuORF	ENST00000456969.2_1_X:75555899-75556166:-|nuORF	ENST00000456969.2_1_X:75555899-75556166:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7737731933594	2	493.772522	985.530492	2.7826	0.001374	0.76079	0.00037566	3.5434	0.0017497	493.77289398142346	45.82	0.2923	45.82	45.718	46.01	0					28	13	3	0	0	0	0.66989	1	18350	18350		37.812	0	1	166530			8877	9692	5170	5199	9038	9038					0.03714804014953188
EGEVQLALER	10	Unmodified	_EGEVQLALER_					0	0	0			REV__DDX43|p.G365Vfs*2|2|0.35|ENSG00000080007|chr6:73408009-73408009|A/-|frameshift_variant	REV__DDX43|p.G365Vfs*2|2|0.35|ENSG00000080007|chr6:73408009-73408009|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.3038940429688	2	572.303852	1142.59315	2.0219	0.0011571	-1.1471	-0.00065649	0.8748	0.00050065	572.3030585602364	33.275	0.57359	33.275	32.875	33.448	0					28	13	3	0	0	0	0.44292	1	12694	12694		51.528	6.5056	1	369660	+		8878	12686	5171	5200	9039	9039					0.02755905292474381
EGFAVSVGAAA	11	Unmodified	_EGFAVSVGAAA_					0	0	0			REV__CLCN4|p.A270E|1|0.39|ENSG00000073464|chrX:10206742-10206742|C/A|missense_variant	REV__CLCN4|p.A270E|1|0.39|ENSG00000073464|chrX:10206742-10206742|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.74786376953125	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.691	1	31.691	31.191	32.191	0								0	0	0	0.28101	1	11564	11564		54.776	3.5836	1		+		8879	12508	5172	5201	9040	9040					-0.007831093448089632
EGFEVALKYKT	11	Unmodified	_EGFEVALKYKT_					0	0	0			REV__ENSG00000121314|ENST00000240615|TAS2R8	REV__ENSG00000121314|ENST00000240615|TAS2R8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	642.8430786132812	2	642.845353	1283.67615	0.21685	0.0001394	-3.9677	-0.0025506	-3.7508	-0.0024112	642.8425441194635	29.618	0.12385	29.618	29.542	29.666	0					6	4	2	0	0	0	0.7887	1	9358	9358		17.468	0.10304	1	73002	+		8880	14310	5173	5202	9041	9041					0.04566222020457644
EGFKMGLTL	9	Oxidation (M)	_EGFKM(Oxidation (M))GLTL_		EGFKM(1)GLTL		EGFKM(74)GLTL	0	0	1		ENST00000496976.1_1_2:189454447-189458735:+|nuORF;nc|ENSG00000144366|Q9UBP9-3|GULP1;ENSG00000144366|ENST00000409830|GULP1	ENST00000496976.1_1_2:189454447-189458735:+|nuORF	ENST00000496976.1_1_2:189454447-189458735:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.2655029296875	2	506.26261	1010.51067	0.2427	0.00012287	3.2198	0.00163	3.4625	0.0017529	506.2646370966181	37.033	0.20923	37.033	36.957	37.166	0					24	9	4	0	0	0	0.12239	1	13248	13248		74.255	7.8258	1	444690			8881	4610	5174	5203	9042	9042		190			0.005832919599811248
EGFLRSAVP	9	Unmodified	_EGFLRSAVP_					0	0	0		nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.26629638671875	2	488.266542	974.51853	-1.0507	-0.00051301	0.3011	0.00014702	-0.74957	-0.00036599	488.26686726535405	21.738	0.15692	21.738	21.657	21.814	0					7	4	2	0	0	0	0.24095	1	6280	6280		56.721	1.9447	1	137750			8882	11459	5175	5204	9043	9043					0.030251872717599326
EGFSDCLRY	9	Unmodified	_EGFSDCLRY_					0	0	0		ENST00000455858.2_2_12:117467953-117468139:+|nuORF	ENST00000455858.2_2_12:117467953-117468139:+|nuORF	ENST00000455858.2_2_12:117467953-117468139:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2376708984375	2	545.237124	1088.45969	1.9275	0.001051	-1.3186	-0.00071896	0.6089	0.00033199	545.2364805407019	35.374	0.33129	35.374	35.281	35.613	0					15	9	3	0	0	0	0.25716	1	13700	13700		54.776	1.8396	1	373100			8883	9682	5176	5205	9044	9044					-0.08099657084881073
EGFTLRPYA	9	Unmodified	_EGFTLRPYA_					0	0	0		tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2730102539062	2	527.271824	1052.5291	0.33861	0.00017854	2.2561	0.0011896	2.5947	0.0013681	527.2732839554649	32.255	0.28477	32.255	32.161	32.446	0					17	12	2	0	0	0	0.41113	1	10773	10773		40.778	1.5253	1	71839			8884	23032	5177	5206	9045	9045					0.0049316992619878874
EGFVCRWPT	9	Unmodified	_EGFVCRWPT_					0	0	0			REV__ENST00000488164.5_1_9:74978812-74978980:-|nuORF	REV__ENST00000488164.5_1_9:74978812-74978980:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7723388671875	2	547.758027	1093.5015	0.47114	0.00025807	3.371	0.0018465	3.8422	0.0021046	547.7592214381633	29.416	0.21376	29.416	29.313	29.527	0					14	5	3	0	0	0	0.35021	1	10466	10466		45.972	4.8922	1	275150	+		8885	19688	5178	5207	9046	9046					-0.04151056605701342
EGGADTGRL	9	Unmodified	_EGGADTGRL_					0	0	0			REV__ENST00000447595.1_1_1:179054682-179054961:+|nuORF	REV__ENST00000447595.1_1_1:179054682-179054961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2140808105469	2	438.214506	874.414459	-0.95903	-0.00042026	0.28789	0.00012616	-0.67114	-0.0002941	438.21455802979887	20.442	0.20484	20.442	20.326	20.531	0					9	6	2	0	0	0	0.21263	1	5702	5702		60.118	5.3959	1	111150	+		8886	19289	5179	5208	9047	9047					-0.027771395557351752
EGGADTGRL	9	Unmodified	_EGGADTGRL_					0	0	0			REV__ENST00000447595.1_1_1:179054682-179054961:+|nuORF	REV__ENST00000447595.1_1_1:179054682-179054961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.2141418457031	2	438.214506	874.414459	0.6823	0.00029899	-1.2239	-0.00053632	-0.54157	-0.00023732	438.213969368688	20.653	0.31812	20.653	20.512	20.83	0					10	6	2	0	0	0	0.33044	1	6747	6747		47.657	1.2006	1	594120	+		8887	19289	5179	5208	9048	9048					-0.027771395557351752
EGGAVEVKV	9	Unmodified	_EGGAVEVKV_					0	0	0			REV__ENST00000486335.1_1_2:74702161-74702799:-|nuORF	REV__ENST00000486335.1_1_2:74702161-74702799:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2452087402344	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.155	1	27.155	26.655	27.655	0								0	0	0	0.15451	1	9806	9806		58.782	0	1		+		8888	19664	5180	5209	9049	9049					0.028217921435384596
EGGCKKKKS	9	Unmodified	_EGGCKKKKS_					0	0	0		PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant;ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant	PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.76513671875	2	482.765852	963.51715	-2.9202	-0.0014098	-0.36313	-0.00017531	-3.2833	-0.0015851	482.76559972604207	14.181	0.17808	14.181	14.043	14.221	0					14	9	2	0	0	0	0.56424	1	2943	2943		25.574	2.5316	1	107670			8889	2440	5181	5210	9050	9050					0.03393229911353046
EGGDGPEQR	9	Unmodified	_EGGDGPEQR_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant;ENST00000502824.1_1_5:31799421-31843499:+|nuORF;PDZD2|p.G594Afs*45|1|0.09|ENSG00000133401|chr5:32052720-32052720|A/-|frameshift_variant;PDZD2|p.K104Qfs*38|1|0.42|ENSG00000133401|chr5:31799549-31799550|-/G|frameshift_variant	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7055358886719	2	472.707045	943.399537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.441	1	37.441	36.941	37.941	0								0	0	0	0.2591	1	14194	14194		42.396	7.1954	1				8890	3854	5182	5211	9051	9051					-0.07442631423759849
EGGDIRVRR	9	Unmodified	_EGGDIRVRR_					0	0	0		nc|ENSG00000140285|P21781-2|FGF7;ENSG00000140285|ENST00000267843|FGF7	nc|ENSG00000140285|P21781-2|FGF7	nc|ENSG00000140285|P21781-2|FGF7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3218994140625	2	529.296696	1056.57884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.901	1	12.901	12.401	13.401	0								0	0	0	0.24724	1	2862	2862		44.117	1.2525	1				8891	4375	5183	5212	9052	9052					0.052812976548466395
EGGFGPGPLW	10	Unmodified	_EGGFGPGPLW_					0	0	0		ENST00000371739.3_1_9:139256373-139256460:-|nuORF	ENST00000371739.3_1_9:139256373-139256460:-|nuORF	ENST00000371739.3_1_9:139256373-139256460:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.74725341796875	2	508.745442	1015.47633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.124	1	33.124	32.624	33.624	0								0	0	0	0.3652	1	12559	12559		40.573	1.7665	1				8892	8970	5184	5213	9053	9053					-0.030787881366336478
EGGGDDRQGW	10	Unmodified	_EGGGDDRQGW_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000018574	REV__CON__ENSEMBL:ENSBTAP00000018574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7234497070312	2	538.723227	1075.4319	0.24176	0.00013024	0.013705	7.3833E-06	0.25546	0.00013762	538.723255206699	19.86	0.4596	19.86	19.735	20.195	0					31	10	4	0	0	0	0.26198	1	6055	6055		71.877	13.096	1	4873500	+	+	8893	12577	5185	5214	9054	9054					-0.1027984402076072
EGGGDDRQGW	10	Unmodified	_EGGGDDRQGW_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000018574	REV__CON__ENSEMBL:ENSBTAP00000018574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7239990234375	2	538.723227	1075.4319	1.9204	0.0010346	-0.85381	-0.00045996	1.0666	0.00057461	538.7226929561178	18.352	0.52131	18.352	18.19	18.711	0					20	10	2	0	0	0	0.3337	1	5628	5628		63.534	10.182	1	3002600	+	+	8894	12577	5185	5214	9055	9055					-0.1027984402076072
EGGGDDRQGW	10	Unmodified	_EGGGDDRQGW_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000018574	REV__CON__ENSEMBL:ENSBTAP00000018574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7237548828125	2	538.723227	1075.4319	1.9244	0.0010367	-1.334	-0.00071868	0.59032	0.00031802	538.7224659893903	19.766	0.51958	19.766	19.609	20.128	0					28	10	5	0	0	0	0.32758	1	6291	6291		64.207	9.431	1	5253700	+	+	8895	12577	5185	5214	9056	9056					-0.1027984402076072
EGGGFLGRKK	10	Unmodified	_EGGGFLGRKK_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.2015380859375	3	350.201452	1047.58253	-1.9876	-0.00069607	2.4691	0.00086469	0.48151	0.00016863	350.20212958278637	18.755	0.16551	18.755	18.638	18.803	0					6	4	2	0	0	0	0.65895	1	4967	4967		27.047	2.5281	1	70954			8896	4095	5186	5215	9057	9057					0.06063967428713113
EGGGKDQLK	9	Unmodified	_EGGGKDQLK_					0	0	0			REV__ENST00000452532.1_1_X:55934586-55934826:+|nuORF	REV__ENST00000452532.1_1_X:55934586-55934826:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.24554443359375	2	466.245806	930.47706	-0.91176	-0.00042511	1.3368	0.00062327	0.42502	0.00019816	466.24622454593174	16.017	0.19086	16.017	15.865	16.056	0					11	7	2	0	0	0	0.2873	1	3750	3750		51.335	10.557	1	102340	+		8897	19319	5187	5216	9058	9058					0.009040065124281682
EGGGKWEEVI	10	Unmodified	_EGGGKWEEVI_					0	0	0			REV__ENST00000379103.7_1_17:26205529-26205697:-|nuORF	REV__ENST00000379103.7_1_17:26205529-26205697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2728881835938	2	552.272021	1102.52949	1.8176	0.0010038	0.58317	0.00032207	2.4008	0.0013259	552.2721755351139	29.939	0.218	29.939	29.83	30.048	0					8	4	2	0	0	0	0.39566	1	11040	11040		56.721	3.7844	1	359800	+		8898	18755	5188	5217	9059	9059					-0.0176745514461345
EGGGPSCAGKE	11	Carbamidomethyl (C)	_EGGGPSC(Carbamidomethyl (C))AGKE_	EGGGPSC(1)AGKE		EGGGPSC(43)AGKE		0	1	0			REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.721923828125	2	524.721838	1047.42912	0.093646	4.9138E-05	0.27666	0.00014517	0.37031	0.00019431	524.7219085485983	13.487	0.29907	13.487	13.406	13.705	0					14	8	2	0	0	0	0.51875	1	3071	3071		42.864	12.547	1	3153700	+		8899	18360	5189	5218	9060	9060	649				-0.09269435469923337
EGGHRARVI	9	Unmodified	_EGGHRARVI_					0	0	0			REV__CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant	REV__CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.78173828125	2	497.780682	993.546811	2.9139	0.0014505	-0.73152	-0.00036413	2.1824	0.0010864	497.7802952907611	30.461	0.40471	30.461	30.309	30.714	0					21	8	3	0	0	0	0.15163	1	11269	11269		42.396	1.8235	1	3051800	+		8900	12656	5190	5219	9061	9061					0.049779299716988135
EGGIEDLVR	9	Unmodified	_EGGIEDLVR_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2574157714844	2	494.258914	986.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.789	1	12.789	12.289	13.289	0								0	0	0	0.2591	1	2964	2964		42.396	3.1433	1				8901	7165	5191	5220	9062	9062					0.009482756839133799
EGGIHKDIL	9	Unmodified	_EGGIHKDIL_					0	0	0		PARP8|p.E842D|1|0.29|ENSG00000151883|chr5:50842029-50842029|G/T|missense_variant	PARP8|p.E842D|1|0.29|ENSG00000151883|chr5:50842029-50842029|G/T|missense_variant	PARP8|p.E842D|1|0.29|ENSG00000151883|chr5:50842029-50842029|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2716369628906	2	491.271824	980.529095	-0.52404	-0.00025745	0.061623	3.0273E-05	-0.46242	-0.00022717	491.2718196876157	38.895	0.29002	38.895	38.776	39.066	0					26	10	3	0	0	0	0.38666	1	14772	14772		42.864	4.1107	1	835760			8902	11899	5192	5221	9063	9063					0.03805169926192775
EGGKKVDGSI	10	Unmodified	_EGGKKVDGSI_					0	0	0			REV__ENST00000440972.1_1_2:65659170-65659719:-|nuORF	REV__ENST00000440972.1_1_2:65659170-65659719:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2667236328125	2	495.266739	988.518924	0.70354	0.00034844	-1.4549	-0.00072055	-0.75134	-0.00037211	495.2660098538136	24.104	0.21852	24.104	23.995	24.213	0					12	4	4	0	0	0	0.28675	1	8429	8429		68.846	3.3808	1	2201000	+		8903	19233	5193	5222	9064	9064					0.024205622009503713
EGGKLLGMLL	10	Unmodified	_EGGKLLGMLL_					0	0	0			REV__ENST00000396987.7_1_8:41479072-41479165:+|nuORF	REV__ENST00000396987.7_1_8:41479072-41479165:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.8038330078125	2	515.801903	1029.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.107	1	18.107	17.607	18.607	0								0	0	0	0.19992	1	4676	4676		64.207	7.4862	1		+		8904	18905	5194	5223	9065	9065					0.07564144265074901
EGGKQLMML	9	Unmodified	_EGGKQLMML_					0	0	0			REV__nc|ENSG00000211813|A0A0B4J273|TRAV34	REV__nc|ENSG00000211813|A0A0B4J273|TRAV34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.75604248046875	2	503.756638	1005.49872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.052	1	30.052	29.552	30.552	0								0	0	0	0.28666	1	11194	11194		37.812	1.3648	1		+		8905	21203	5195	5224	9066	9066					-0.0038064805485191755
EGGPPPRPKR	10	Unmodified	_EGGPPPRPKR_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.8096923828125	2	545.809439	1089.60433	0.40915	0.00022332	0.92105	0.00050272	1.3302	0.00072603	545.809495901518	19.255	0.15294	19.255	19.155	19.308	0					5	3	2	0	0	0	0.44601	1	5790	5790		51.193	0	1	453870			8906	7843	5196	5225	9067	9067					0.06310772177266699
EGGQCMVSLL	10	Unmodified	_EGGQCMVSLL_					0	0	0			REV__SLC8A2|p.T417M|1|0.39|ENSG00000118160|chr19:47457020-47457020|G/A|missense_variant	REV__SLC8A2|p.T417M|1|0.39|ENSG00000118160|chr19:47457020-47457020|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7415161132812	2	518.743728	1035.4729	0.055018	2.854E-05	-4.2219	-0.0021901	-4.1668	-0.0021615	518.7415037816447	14.374	0.090002	14.374	14.327	14.417	0					4	2	2	0	0	0	0.12896	1	3491	3491		90.37	2.6734	1	1145300	+		8907	21538	5197	5226	9068	9068					-0.04341542297129308
EGGRAKILS	9	Unmodified	_EGGRAKILS_					0	0	0			REV__DLEC1|p.S123G|1|0.29|ENSG00000008226|chr3:38039592-38039592|A/G|missense_variant	REV__DLEC1|p.S123G|1|0.29|ENSG00000008226|chr3:38039592-38039592|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7716064453125	2	465.771991	929.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.647	1	20.647	20.147	21.147	0								0	0	0	0.27025	1	6441	6441		40.778	4.3314	1		+		8908	12713	5198	5227	9069	9069					0.06184589646045424
EGGRCVDGRC	10	Unmodified	_EGGRCVDGRC_					0	0	0		TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant;nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant	TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2257690429688	2	526.224025	1050.4335	3.4587	0.0018201	-0.077938	-4.1013E-05	3.3808	0.001779	526.2240383262096	16.325	0.26589	16.325	16.217	16.483	0					14	5	4	0	0	0	0.43008	1	4509	4509		52.937	1.6012	1	1765100			8909	6095	5199	5228	9070	9070					-0.08970249527988017
EGGRDAISI	9	Unmodified	_EGGRDAISI_					0	0	0		nc|ENSG00000158887|P25189-2|MPZ;ENSG00000158887|ENST00000533357|MPZ	nc|ENSG00000158887|P25189-2|MPZ	nc|ENSG00000158887|P25189-2|MPZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2372741699219	2	459.237981	916.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.613	1	24.613	24.113	25.113	0								0	0	0	0.27025	1	7702	7702		40.778	0.20554	1				8910	5290	5200	5229	9071	9071					-0.00016280004626878508
EGGSDQRPGP	10	Unmodified	_EGGSDQRPGP_					0	0	0		nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7320861816406	2	500.228145	998.441737	0.15711	7.8589E-05	2.0397	0.0010203	2.1968	0.0010989	500.22878210770125	22.563	0.66965	22.563	22.333	23.003	0					43	15	4	0	0	0	0.66185	1	6836	6836		26.693	1.1189	1	1060300			8911	11690	5201	5230	9072	9072					-0.05754656015369619
EGGSRVYEL	9	Unmodified	_EGGSRVYEL_					0	0	0			REV__AXIN2|p.R256Efs*13|1|0.55|ENSG00000168646|chr17:65557856-65557857|-/A|frameshift_variant	REV__AXIN2|p.R256Efs*13|1|0.55|ENSG00000168646|chr17:65557856-65557857|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.25128173828125	2	505.251089	1008.48762	1.2334	0.00062319	0.37425	0.00018909	1.6077	0.00081227	505.2507996390212	34.467	0.64718	34.467	34.037	34.684	0					21	13	3	0	0	0	0.46194	1	13214	13214		36.447	2.2742	1	235700	+		8912	12266	5202	5231	9073	9073					-0.016280108331443444
EGGSVQKLI	9	Unmodified	_EGGSVQKLI_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7663269042969	2	465.766374	929.518196	0.068953	3.2116E-05	-0.30953	-0.00014417	-0.24057	-0.00011205	465.7663626702165	21.747	0.24266	21.747	21.648	21.891	0					17	7	3	0	0	0	0.10915	1	6021	6021		77.318	15.21	1	549170	+		8913	15972	5203	5232	9074	9074					0.05061767551910634
EGGSVQKLI	9	Unmodified	_EGGSVQKLI_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.76617431640625	2	465.766374	929.518196	0.67139	0.00031271	-1.5134	-0.00070487	-0.84197	-0.00039216	465.76589788785026	21.964	0.26166	21.964	21.858	22.119	0					11	5	3	0	0	0	0.19605	1	7379	7379		62.107	3.8775	1	413030	+		8914	15972	5203	5232	9075	9075					0.05061767551910634
EGGTLKAVK	9	Unmodified	_EGGTLKAVK_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant;KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7687072753906	2	451.768917	901.523281	-0.40879	-0.00018468	-0.52603	-0.00023764	-0.93482	-0.00042232	451.76869609517973	25.324	0.16705	25.324	25.264	25.431	0					7	3	3	0	0	0	0.30841	1	8866	8866		49.536	1.5765	1	198530			8915	3189	5204	5233	9076	9076					0.06858071414512779
EGGTRFGAR	9	Unmodified	_EGGTRFGAR_					0	0	0		ENSG00000235194|ENST00000452015|PPP1R3E	ENSG00000235194|ENST00000452015|PPP1R3E	ENSG00000235194|ENST00000452015|PPP1R3E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7425231933594	2	475.743765	949.472977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.151	1	17.151	16.651	17.651	0								0	0	0	0.3245	1	5043	5043		30.318	2.4355	1				8916	7905	5205	5234	9077	9077					-0.003780381906153707
EGGVFLLREQ	10	Unmodified	_EGGVFLLREQ_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.3093872070312	2	574.308938	1146.60332	1.0503	0.00060321	-0.3955	-0.00022714	0.65483	0.00037608	574.3086281437139	22.477	0.10862	22.477	22.423	22.532	0					5	3	2	0	0	0	0.53919	1	6364	6364		29.17	0	1	111200	+		8917	14816	5206	5235	9078	9078					0.03588513017712103
EGGWGLKSQ	9	Unmodified	_EGGWGLKSQ_					0	0	0		ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7974853515625	2	481.240524	960.466495	-0.29393	-0.00014145	4.4892	0.0021604	4.1953	0.0020189	481.24296082782377	21.534	0.14902	21.534	21.435	21.584	0					5	3	2	0	0	0	0.33044	1	6227	6227		47.657	1.7054	1	53431			8918	8054	5207	5236	9079	9079					-0.015319761419959832
EGHKPAAAI	9	Unmodified	_EGHKPAAAI_					0	0	0		tr|U7T2S8|U7T2S8_FUSNU(R)-2-hydroxyglutaryl-CoAdehydratasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00401PE=3SV=1	tr|U7T2S8|U7T2S8_FUSNU(R)-2-hydroxyglutaryl-CoAdehydratasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00401PE=3SV=1	tr|U7T2S8|U7T2S8_FUSNU(R)-2-hydroxyglutaryl-CoAdehydratasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00401PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.24493408203125	2	447.245609	892.476666	-2.6649	-0.0011918	1.7644	0.0007891	-0.9005	-0.00040274	447.24629848123664	29.032	0.46918	29.032	28.91	29.379	0					16	12	2	0	0	0	0.53083	1	9713	9713		29.15	0.89528	1	89268			8919	22951	5208	5237	9080	9080					0.026126315832243563
EGHSPLGL	8	Unmodified	_EGHSPLGL_					0	0	0			REV__nc|ENSG00000187634|Q96NU1|SAMD11	REV__nc|ENSG00000187634|Q96NU1|SAMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	405.2112731933594	2	405.211235	808.407917	-1.3716	-0.00055577	0.99313	0.00040243	-0.37842	-0.00015334	405.21162064092977	30.39	0.23132	30.39	30.278	30.509	0					13	7	2	0	0	0	0.65276	1	9983	9983		40.573	1.7665	1	83820	+		8920	21164	5209	5238	9081	9081					-0.003950327164830014
EGICCIIAGL	10	Unmodified	_EGICCIIAGL_					0	0	0		nc|ENSG00000170482|Q9UHI7-2|SLC23A1;ENSG00000170482|ENST00000348729|SLC23A1	nc|ENSG00000170482|Q9UHI7-2|SLC23A1	nc|ENSG00000170482|Q9UHI7-2|SLC23A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.252197265625	2	496.251188	990.487824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.837	1	20.837	20.337	21.337	0								0	0	0	0.40002	1	5887	5887		30.504	1.3541	1				8921	6240	5210	5239	9082	9082					-0.007800504291481047
EGICSLVEL	9	Unmodified	_EGICSLVEL_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7482604980469	2	481.746793	961.479033	2.3665	0.0011401	1.0819	0.00052118	3.4484	0.0016612	481.7473162039508	17.268	0.357	17.268	17.158	17.515	0					15	7	3	0	0	0	0.099922	1	4939	4939		79.451	2.6044	1	6757700			8922	5037	5211	5240	9083	9083					-0.003247007939762625
EGIEEGVVK	9	Unmodified	_EGIEEGVVK_					0	0	0		GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2560729980469	2	480.25584	958.497126	0.93123	0.00044723	-0.82817	-0.00039773	0.10306	4.9497E-05	480.25540740272334	31.513	0.51271	31.513	31.305	31.818	0					26	10	3	0	0	0	0.24095	1	11751	11751		56.721	5.3856	1	2409900			8923	11156	5212	5241	9084	9084					0.01621757452392103
EGIESGDPGTD	11	Unmodified	_EGIESGDPGTD_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.723388671875	2	538.722558	1075.43056	0.85179	0.00045888	0.63549	0.00034235	1.4873	0.00080123	538.722686733814	17.781	0.11619	17.781	17.685	17.801	0					5	3	2	0	0	0	0.56817	1	4310	4310		39.253	2.8061	1	50709			8924	7552	5213	5242	9085	9085					-0.10413522900171301
EGIHLALVEL	10	Unmodified	_EGIHLALVEL_					0	0	0		nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENSG00000149262|ENST00000534064|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	nc|ENSG00000149262|Q96HW7-2|INTS4	nc|ENSG00000149262|Q96HW7-2|INTS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.21319580078125	3	365.213246	1092.61791	0.4753	0.00017358	-0.46547	-0.00016999	0.0098309	3.5904E-06	365.2130229929301	27.58	0.38456	27.58	27.321	27.706	0					22	9	3	0	0	0	0.536	1	9658	9658		41.427	3.6151	1	512470			8925	4871	5214	5243	9086	9086					0.0753058516584133
EGILVVKFV	9	Unmodified	_EGILVVKFV_					0	0	0			REV__ENST00000463614.1_1_1:156031167-156035898:+|nuORF	REV__ENST00000463614.1_1_1:156031167-156035898:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3130187988281	2	502.312961	1002.61137	-0.52326	-0.00026284	1.4435	0.00072508	0.92022	0.00046224	502.3137032394634	44.86	0.49308	44.86	44.538	45.031	0					30	20	2	0	0	0	0.36892	1	18024	18024		45.952	7.1458	1	83378	+		8926	14675	5215	5244	9087	9087					0.11016692005136974
EGINGFEVL	9	Unmodified	_EGINGFEVL_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2489929199219	2	489.250557	976.486562	-0.15911	-7.7843E-05	-4.3758	-0.0021409	-4.5349	-0.0022187	489.24883672069114	26.251	0.1001	26.251	26.202	26.302	0					4	2	2	0	0	0	0.35021	1	8440	8440		45.972	0.020292	1	83325	+		8927	17835	5216	5245	9088	9088					-0.002622252020501037
EGIPRAGLS	9	Unmodified	_EGIPRAGLS_					0	0	0		ENST00000560255.2_1_15:80216218-80216353:+|nuORF	ENST00000560255.2_1_15:80216218-80216353:+|nuORF	ENST00000560255.2_1_15:80216218-80216353:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2525939941406	2	450.250892	898.48723	2.539	0.0011432	1.1729	0.00052811	3.712	0.0016713	450.2514906820506	36.959	0.40973	36.959	36.744	37.154	0					14	8	3	0	0	0	0.35021	1	14418	14418		45.972	8.8131	1	277600			8928	10688	5217	5246	9089	9089					0.03392614237657199
EGIPVEMVV	9	Unmodified	_EGIPVEMVV_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC;ENST00000529092.1_1_11:61106599-61106976:+|nuORF	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.75823974609375	2	486.757161	971.499769	0.40556	0.00019741	1.7534	0.00085349	2.159	0.0010509	486.75825883523447	24.516	0.13252	24.516	24.4	24.533	0					5	3	2	0	0	0	0.43426	1	7651	7651		38.806	8.3025	1	54780			8929	4885	5218	5247	9090	9090					0.012878895856943018
EGIRACKW	8	Unmodified	_EGIRACKW_					0	0	0			REV__ENSG00000174695|ENST00000502346|TMEM167A	REV__ENSG00000174695|ENST00000502346|TMEM167A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.748291015625	2	481.747462	961.480371	-0.54394	-0.00026204	2.1325	0.0010273	1.5885	0.00076527	481.7484546300512	17.293	0.16826	17.293	17.183	17.351	0					6	3	2	0	0	0	0.5676	1	5121	5121		53.351	0.41475	1	483340	+		8930	16576	5219	5248	9091	9091					-0.0019102191456568107
EGIRNESL	8	Unmodified	_EGIRNESL_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2378234863281	2	459.237981	916.461409	0.72245	0.00033178	0.58684	0.0002695	1.3093	0.00060127	459.2372602786221	24.676	0.31174	24.676	24.545	24.857	0					15	6	3	0	0	0	0.28444	1	8692	8692		87.696	4.946	1	481840	+		8931	16693	5220	5249	9092	9092					-0.00016280004626878508
EGIYERPV	8	Unmodified	_EGIYERPV_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.74884033203125	2	481.750724	961.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.088	1	17.088	16.588	17.588	0								0	0	0	1.7419	1	4214	4214		37.159	2.9866	1				8932	1497	5221	5250	9093	9093					0.0046119451779986775
EGIYKIDL	8	Unmodified	_EGIYKIDL_					0	0	0			REV__tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	REV__tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7610778808594	2	475.7633	949.512048	-0.11931	-5.6762E-05	-3.5564	-0.001692	-3.6757	-0.0017488	475.761943972292	19.042	0.31292	19.042	18.984	19.297	0					14	6	3	0	0	0	0.63077	1	5963	5963		44.117	3.5442	1	458970	+		8933	22036	5222	5251	9094	9094					0.03527249320381998
EGKEHVPKQRQ	11	Unmodified	_EGKEHVPKQRQ_					0	0	0		PCDHB2|p.R9H|1|0.36|ENSG00000112852|chr5:141094816-141094816|G/A|missense_variant	PCDHB2|p.R9H|1|0.36|ENSG00000112852|chr5:141094816-141094816|G/A|missense_variant	PCDHB2|p.R9H|1|0.36|ENSG00000112852|chr5:141094816-141094816|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.5743408203125	3	445.909109	1334.7055	-0.17169	-7.6559E-05	-0.46311	-0.0002065	-0.6348	-0.00028306	445.90898107230686	19.535	0.1138	19.535	19.479	19.593	0					4	2	2	0	0	0	0.50799	1	6202	6202		43.651	0.78652	1	371180			8934	11906	5223	5252	9095	9095					0.051531790893022844
EGKFKDTLH	9	Unmodified	_EGKFKDTLH_					0	0	0		nc|ENSG00000243772|P43628-2|KIR2DL3;ENSG00000243772|ENST00000342376|KIR2DL3	nc|ENSG00000243772|P43628-2|KIR2DL3	nc|ENSG00000243772|P43628-2|KIR2DL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8574523925781	3	358.857463	1073.55056	0.4844	0.00017383	-0.55491	-0.00019913	-0.070514	-2.5304E-05	358.8572315586311	23.394	0.40342	23.394	23.161	23.565	0					18	9	4	0	0	0	0.51817	1	7749	7749		37.812	15.25	1	1753600			8935	7959	5224	5253	9096	9096					0.016725549548937124
EGKGVASTT	9	Unmodified	_EGKGVASTT_					0	0	0			REV__ENST00000593209.5_2_17:40340836-40341070:-|nuORF	REV__ENST00000593209.5_2_17:40340836-40341070:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2197570800781	2	425.219257	848.423961	-0.36061	-0.00015334	0.99979	0.00042513	0.63918	0.00027179	425.21972826369455	14.141	0.11112	14.141	14.09	14.201	0					4	2	2	0	0	0	0.53083	1	3614	3614		29.15	1.2673	1	73965	+		8936	20548	5225	5254	9097	9097					-0.006313712702421981
EGKKQSRMV	9	Unmodified	_EGKKQSRMV_					0	0	0			REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.790283203125	2	531.789858	1061.56516	0.3657	0.00019448	-0.25562	-0.00013594	0.11008	5.854E-05	531.7899175838085	15.142	0.082379	15.142	15.086	15.169	0					6	3	2	0	0	0	0.30841	1	3229	3229		34.173	0	1	88306	+		8937	22084	5226	5255	9098	9098					0.03684303831391844
EGKKVYRILK	10	Unmodified	_EGKKVYRILK_					0	0	0		tr|U7SUV6|U7SUV6_FUSNUCobalaminbiosynthesisproteinCobDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobDPE=3SV=1	tr|U7SUV6|U7SUV6_FUSNUCobalaminbiosynthesisproteinCobDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobDPE=3SV=1	tr|U7SUV6|U7SUV6_FUSNUCobalaminbiosynthesisproteinCobDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobDPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.5903625488281	3	411.92744	1232.76049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.477	1	14.477	13.977	14.977	0								0	0	0	0.4201	1	3072	3072		16.007	1.3131	1				8938	22832	5227	5256	9099	9099					0.15342217627880927
EGKKYIQTA	9	Unmodified	_EGKKYIQTA_					0	0	0		tr|U7SS07|U7SS07_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01498PE=3SV=1	tr|U7SS07|U7SS07_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01498PE=3SV=1	tr|U7SS07|U7SS07_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01498PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.285888671875	2	519.284931	1036.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.035	1	16.035	15.535	16.535	0								0	0	0	0.3063	1	3586	3586		34.173	1.3601	1				8939	22730	5228	5257	9100	9100					0.03849439097643881
EGKLTLILG	9	Unmodified	_EGKLTLILG_					0	0	0			REV__ENST00000277795.8_1_10:70048210-70048411:-|nuORF	REV__ENST00000277795.8_1_10:70048210-70048411:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2948913574219	2	472.294768	942.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.972	1	36.972	36.472	37.472	0								0	0	0	0.27025	1	13239	13239		40.778	3.6191	1		+		8940	13868	5229	5258	9101	9101					0.10139815108448147
EGKNGISAL	9	Unmodified	_EGKNGISAL_					0	0	0			REV__nc|ENSG00000196418|Q15973-5|ZNF124	REV__nc|ENSG00000196418|Q15973-5|ZNF124	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.7428283691406	2	444.742899	887.471246	-0.47731	-0.00021228	0.75492	0.00033574	0.2776	0.00012346	444.74315717024876	37.592	0.16531	37.592	37.528	37.693	0					12	8	2	0	0	0	0.07136	1	13453	13453		87.696	0	1	76865	+		8941	17249	5230	5259	9102	9102					0.02300908000745494
EGKPGPVGQL	10	Unmodified	_EGKPGPVGQL_					0	0	0			REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2717590332031	2	491.271824	980.529095	-0.72996	-0.00035861	0.46238	0.00022715	-0.26758	-0.00013146	491.27201539790536	38.863	0.20514	38.863	38.777	38.982	0					14	7	2	0	0	0	0.60281	1	15255	15255		33.922	1.1092	1	204470	+		8942	17335	5231	5260	9103	9103					0.03805169926192775
EGKPGVGGF	9	Unmodified	_EGKPGVGGF_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.2185363769531	2	424.21906	846.423567	-1.1207	-0.00047543	0.74706	0.00031692	-0.37364	-0.00015851	424.2193531029257	36.534	0.35513	36.534	36.36	36.715	0					26	19	2	0	0	0	0.47038	1	12347	12347		35.618	0	1	52602			8943	4335	5232	5261	9104	9104					-0.005787461994145815
EGKPKHRR	8	Unmodified	_EGKPKHRR_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343017578125	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.576	1	55.576	55.076	56.076	0								0	0	0	1.7419	1	21016	21016		20.947	0	1				8944	8056	5233	5262	9105	9105					0.0754192272564751
EGKQKSKEL	9	Unmodified	_EGKQKSKEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7969360351562	2	523.795663	1045.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.524	1	26.524	26.024	27.024	0								0	0	0	0.33579	1	8072	8072		28.081	0.19925	1				8945	1514	5234	5263	9106	9106					0.055808241263775926
EGKSGTEGR	9	Unmodified	_EGKSGTEGR_					0	0	0			REV__ENST00000487017.5_1_3:48609337-48621784:-|nuORF	REV__ENST00000487017.5_1_3:48609337-48621784:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7242126464844	2	460.725238	919.435923	-0.69552	-0.00032045	-1.3959	-0.00064312	-2.0914	-0.00096356	460.7246228086993	14.815	0.39626	14.815	14.721	15.117	0					21	9	3	0	0	0	0.47038	1	3699	3699		35.618	1.4457	1	5539300	+		8946	12566	5235	5264	9107	9107					-0.027017545270496157
EGKSILLFG	9	Unmodified	_EGKSILLFG_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.27764892578125	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.9	1	14.9	14.4	15.4	0								0	0	0	0.24724	1	3306	3306		44.117	5.3107	1				8947	1954	5236	5265	9108	9108					0.06091242074330694
EGKSIPNIIK	10	Unmodified	_EGKSIPNIIK_					0	0	0		COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant;nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant	COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.8901062011719	3	366.888763	1097.64446	3.1647	0.0011611	0.40085	0.00014707	3.5655	0.0013081	366.88897766821987	30.654	1.6478	30.654	30.505	32.153	0					73	33	6	0	0	0	0.26198	1	11358	11358		74.165	10.739	1	17261000			8948	605	5237	5266	9109	9109					0.09954274057167822
EGKSIPNIIK	10	Unmodified	_EGKSIPNIIK_					0	0	0		COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant;nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant	COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8316040039062	2	549.829506	1097.64446	3.7604	0.0020676	0.48709	0.00026782	4.2475	0.0023354	549.8296618002693	30.654	1.0491	30.654	30.505	31.554	0					51	21	6	0	0	0	0.2538	1	11359	11359		72.879	2.063	1	13714000			8949	605	5237	5266	9110	9110					0.09954274057167822
EGKTTDYY	8	Unmodified	_EGKTTDYY_					0	0	0		tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7158508300781	2	488.716547	975.418542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.982	1	32.982	32.482	33.482	0								0	0	0	1.7419	1	12157	12157		20.482	2.1574	1				8950	23001	5238	5267	9111	9111					-0.07015094852727088
EGKVLGILGH	10	Unmodified	_EGKVLGILGH_					0	0	0		tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.5377502441406	3	341.537953	1021.59203	0.50919	0.00017391	-1.0017	-0.00034211	-0.49248	-0.0001682	341.5377853840018	29.281	0.24578	29.281	29.118	29.364	0					11	6	2	0	0	0	0.65051	1	10450	10450		28.081	3.5623	1	207380			8951	22780	5239	5268	9112	9112					0.08209735714240196
EGKYQLGI	8	Unmodified	_EGKYQLGI_					0	0	0			REV__ENSG00000147041|ENST00000297875|SYTL5	REV__ENSG00000147041|ENST00000297875|SYTL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2480163574219	2	454.247818	906.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.931	1	37.931	37.431	38.431	0								0	0	0	1.7419	1	13575	13575		30.504	1.3541	1		+		8952	15328	5240	5269	9113	9113					0.024100960061332444
EGLAARFR	8	Unmodified	_EGLAARFR_					0	0	0			REV__VWA7|p.L622*|1|0.47|ENSG00000204396|chr6:31767176-31767176|G/-|frameshift_variant	REV__VWA7|p.L622*|1|0.47|ENSG00000204396|chr6:31767176-31767176|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.25775146484375	2	460.259051	918.503549	-0.054689	-2.5171E-05	-2.0185	-0.00092906	-2.0732	-0.00095423	460.2580538434473	30.832	0.15119	30.832	30.764	30.915	0					9	4	3	0	0	0	0.60719	1	10540	10540		47.916	3.5384	1	180070	+		8953	17482	5241	5270	9114	9114					0.04103740194409511
EGLAFRRP	8	Unmodified	_EGLAFRRP_					0	0	0		ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.265869140625	2	473.266876	944.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.789	1	36.789	36.289	37.289	0								0	0	0	1.7419	1	12056	12056		55.504	0.73953	1				8954	983	5242	5271	9115	9115					0.044720267114598755
EGLASDMSDE	10	Unmodified	_EGLASDMSDE_					0	0	0		ENST00000465250.6_1_19:16742403-16758047:-|nuORF	ENST00000465250.6_1_19:16742403-16758047:-|nuORF	ENST00000465250.6_1_19:16742403-16758047:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.203857421875	2	527.205686	1052.39682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.456	1	18.456	17.956	18.956	0								0	0	0	0.4201	1	5668	5668		20.947	1.587	1				8955	9775	5243	5272	9116	9116					-0.127282676636014
EGLCLEGKK	9	Carbamidomethyl (C)	_EGLC(Carbamidomethyl (C))LEGKK_	EGLC(1)LEGKK		EGLC(80)LEGKK		0	1	0			REV__ENST00000374530.7_2_9:112931637-112931742:+|nuORF	REV__ENST00000374530.7_2_9:112931637-112931742:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2710571289062	2	517.270967	1032.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.969	1	15.969	15.469	16.469	0								0	0	0	0.072369	1	4327	4327		79.713	7.8351	1		+		8956	18695	5244	5273	9117	9117	666				0.01241792845917189
EGLCRWLVL	9	Unmodified	_EGLCRWLVL_					0	0	0		ENST00000562945.2_1_16:34428496-34428757:-|nuORF	ENST00000562945.2_1_16:34428496-34428757:-|nuORF	ENST00000562945.2_1_16:34428496-34428757:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.8020629882812	2	544.799694	1087.58484	1.1785	0.00064202	1.8711	0.0010194	3.0495	0.0016614	544.8006933377559	35.491	0.15754	35.491	35.434	35.591	0					10	8	2	0	0	0	0.47473	1	11641	11641		35.618	7.736	1	42052			8957	10728	5245	5274	9118	9118					0.04454679842137921
EGLDLRHR	8	Unmodified	_EGLDLRHR_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2742919921875	2	498.27269	994.530826	3.3841	0.0016862	0.12716	6.336E-05	3.5112	0.0017495	498.2727246897542	34.527	0.17214	34.527	34.455	34.627	0					12	7	3	0	0	0	0.54629	1	11646	11646		55.504	0	1	137660	+		8958	13905	5246	5275	9119	9119					0.03334223734805164
EGLENWHF	8	Unmodified	_EGLENWHF_					0	0	0			REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2340087890625	2	516.232699	1030.45084	1.2393	0.00063978	1.1247	0.0005806	2.364	0.0012204	516.2329756382486	28.014	0.62454	28.014	27.833	28.458	0					18	8	3	0	0	0	0.58597	1	9863	9863		51.335	5.3632	1	229850	+		8959	17981	5247	5276	9120	9120					-0.06316262659061067
EGLFHFSVA	9	Unmodified	_EGLFHFSVA_					0	0	0			REV__POLD1|p.T642Hfs*97|1|0.26|ENSG00000062822|chr19:50409147-50409148|-/C|frameshift_variant	REV__POLD1|p.T642Hfs*97|1|0.26|ENSG00000062822|chr19:50409147-50409148|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.75628662109375	2	503.753267	1005.49198	2.9299	0.0014759	2.4138	0.0012159	5.3436	0.0026919	503.75427137580385	14.18	0.71865	14.18	14.027	14.745	0					27	14	3	0	0	0	0.51817	1	3556	3556		30.504	1.3541	1	331500	+		8960	13093	5248	5277	9121	9121					-0.01054501619569237
EGLFITNSL	9	Unmodified	_EGLFITNSL_					0	0	0			REV__nc|ENSG00000162594|Q5VWK5-7|IL23R	REV__nc|ENSG00000162594|Q5VWK5-7|IL23R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2674865722656	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.689	1	33.689	33.189	34.189	0								0	0	0	0.22284	1	12481	12481		47.657	10.498	1		+		8961	15823	5249	5278	9122	9122					0.021303478320305658
EGLGEELLQCE	11	Unmodified	_EGLGEELLQCE_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	610.2813110351562	2	610.279186	1218.54382	2.9321	0.0017894	0.53997	0.00032953	3.472	0.0021189	610.2796034128102	20.12	0.2659	20.12	20.011	20.277	0					8	5	2	0	0	0	0.42746	1	6353	6353		49.536	1.5765	1	725190			8962	5562	5250	5279	9123	9123					-0.05671170778623491
EGLGFRSKY	9	Unmodified	_EGLGFRSKY_					0	0	0		NETO2|p.A154S|1|0.29|ENSG00000171208|chr16:47128346-47128346|C/A|missense_variant	NETO2|p.A154S|1|0.29|ENSG00000171208|chr16:47128346-47128346|C/A|missense_variant	NETO2|p.A154S|1|0.29|ENSG00000171208|chr16:47128346-47128346|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7769165039062	2	528.777274	1055.53999	-1.1723	-0.00061986	1.4649	0.00077461	0.29266	0.00015475	528.7779206392934	33.215	0.38149	33.215	33.111	33.493	0					15	11	2	0	0	0	0.34452	1	11623	11623		31.53	2.3803	1	221210			8963	11852	5251	5280	9124	9124					0.01444572300465552
EGLGQVNHT	9	Unmodified	_EGLGQVNHT_					0	0	0		nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;ENST00000563209.1_1_16:58545213-58545477:+|nuORF;nc|ENSG00000103034|Q9ULP0-4|NDRG4;ENSG00000103034|ENST00000570248|NDRG4	nc|ENSG00000103034|Q9ULP0-7|NDRG4	nc|ENSG00000103034|Q9ULP0-7|NDRG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7351989746094	2	477.735606	953.456658	-0.42361	-0.00020238	0.1283	6.1292E-05	-0.29532	-0.00014108	477.7356226440684	24.586	0.4628	24.586	24.477	24.94	0					18	9	4	0	0	0	0.30951	1	8631	8631		49.442	1.7842	1	462600			8964	11465	5252	5281	9125	9125					-0.021931641473997843
EGLHVALAAL	10	Unmodified	_EGLHVALAAL_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2901916503906	2	497.290017	992.565481	-1.1476	-0.00057068	1.4816	0.00073678	0.33401	0.0001661	497.29052867252193	24.363	0.22743	24.363	24.249	24.476	0					11	7	2	0	0	0	0.47621	1	7463	7463		47.916	0.25827	1	57238	+		8965	17133	5253	5282	9126	9126					0.06890046822900331
EGLILHLH	8	Unmodified	_EGLILHLH_					0	0	0			REV__ENST00000591770.1_1_17:76164697-76167257:+|nuORF	REV__ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.271484375	2	466.271627	930.528701	-0.9208	-0.00042934	0.21071	9.8248E-05	-0.71009	-0.00033109	466.271702179987	35.667	0.47487	35.667	35.518	35.993	0					65	23	4	0	0	0	0.75243	1	12036	12036		26.796	5.0938	1	1763500	+		8966	20534	5254	5283	9127	9127					0.060657949969822766
EGLKMLRAT	9	Unmodified	_EGLKMLRAT_					0	0	0			REV__FKBP6|p.P81A|1|0.08|ENSG00000077800|chr7:73329425-73329425|C/G|missense_variant	REV__FKBP6|p.P81A|1|0.08|ENSG00000077800|chr7:73329425-73329425|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7926025390625	2	509.789327	1017.5641	1.3593	0.00069296	4.138	0.0021095	5.4973	0.0028025	509.7918770851258	23.926	0.3163	23.926	23.763	24.079	0					13	5	4	0	0	0	0.098791	1	8192	8192		79.713	6.8333	1	718870	+		8967	20674	5255	5284	9128	9128					0.05602089462490767
EGLKQMKE	8	Unmodified	_EGLKQMKE_					0	0	0			REV__ENSG00000089006|ENST00000377759|SNX5	REV__ENSG00000089006|ENST00000377759|SNX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7519836425781	2	481.75241	961.490267	0.081595	3.9308E-05	-0.74466	-0.00035874	-0.66307	-0.00031943	481.75185002014183	28.705	0.11786	28.705	28.635	28.753	0					8	5	2	0	0	0	0.53424	1	8981	8981		56.721	3.3696	1	72946	+		8968	13400	5256	5285	9129	9129					0.007981213001698961
EGLLLSHL	8	Unmodified	_EGLLLSHL_					0	0	0			REV__ENST00000586118.5_1_18:47802317-47803521:-|nuORF	REV__ENST00000586118.5_1_18:47802317-47803521:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.2580871582031	2	441.258185	880.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.619	1	45.619	45.119	46.119	0								0	0	0	1.7419	1	16960	16960		53.351	0	1		+		8969	20481	5257	5286	9130	9130					0.056786863857951175
EGLLLSHLQ	9	Unmodified	_EGLLLSHLQ_					0	0	0			REV__ENST00000586118.5_1_18:47802317-47803521:-|nuORF	REV__ENST00000586118.5_1_18:47802317-47803521:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.28912353515625	2	505.287474	1008.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.773	1	43.773	43.273	44.273	0								0	0	0	0.32356	1	17096	17096		30.504	1.3541	1		+		8970	20481	5258	5287	9131	9131					0.056457429602687625
EGLLQFTIL	9	Unmodified	_EGLLQFTIL_					0	0	0		NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.P162Qfs*6|2|0.24|ENSG00000082641|chr17:48051597-48051597|C/-|frameshift_variant	NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2989501953125	2	517.30005	1032.58555	-1.4628	-0.00075669	-0.68014	-0.00035184	-2.1429	-0.0011085	517.2996203705189	16.121	0.097843	16.121	16.056	16.154	0					8	3	3	0	0	0	0.19605	1	3747	3747		62.107	5.3864	1	273450			8971	1681	5259	5288	9132	9132					0.07055797762859584
EGLLTALQ	8	Unmodified	_EGLLTALQ_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1;nc|ENSG00000067221|Q9UBI4-5|STOML1;STOML1|p.A372Pfs*3|1|0.41|ENSG00000067221|chr15:73984020-73984020|C/-|frameshift_variant;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7419128417969	2	422.742368	843.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.977	1	31.977	31.477	32.477	0								0	0	0	1.7419	1	10310	10310		45.952	0	1				8972	1405	5260	5289	9133	9133					0.04218693631844417
EGLLVGLKNG	10	Unmodified	_EGLLVGLKNG_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.29547119140625	2	500.295299	998.576045	-1.015	-0.00050778	1.0878	0.00054421	0.072828	3.6436E-05	500.2959811373896	35.56	0.19347	35.56	35.452	35.645	0					16	9	2	0	0	0	0.30737	1	12017	12017		66.429	2.8954	1	79905			8973	5624	5261	5290	9134	9134					0.07670029477321805
EGLNITKL	8	Unmodified	_EGLNITKL_					0	0	0		ENSG00000229453|ENST00000434006|SPINK8	ENSG00000229453|ENST00000434006|SPINK8	ENSG00000229453|ENST00000434006|SPINK8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.26361083984375	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.977	1	30.977	30.477	31.477	0								0	0	0	1.7419	1	10224	10224		39.253	0	1				8974	7887	5262	5291	9135	9135					0.06458669040216591
EGLQALGPL	9	Unmodified	_EGLQALGPL_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL;MSLNL|p.S610Afs*80|2|0.29|ENSG00000162006|chr16:770105-770105|G/-|frameshift_variant;ENSG00000162006|ENST00000543963|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.256103515625	2	449.255643	896.496732	0.62363	0.00028017	-0.96321	-0.00043273	-0.33958	-0.00015256	449.2551895594488	41.468	0.21369	41.468	41.352	41.566	0					16	10	2	0	0	0	0.39215	1	15744	15744		42.396	1.618	1	161230			8975	5437	5263	5292	9136	9136					0.04434382523174918
EGLQKFCL	8	Carbamidomethyl (C)	_EGLQKFC(Carbamidomethyl (C))L_	EGLQKFC(1)L		EGLQKFC(82)L		0	1	0			REV__ENSG00000006062|ENST00000344686|MAP3K14	REV__ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7548522949219	2	497.754953	993.495352	-0.28191	-0.00014032	0.17405	8.6632E-05	-0.10786	-5.3688E-05	497.75494530050054	42.074	0.22485	42.074	41.999	42.224	0					23	11	3	0	0	0	0.3049	1	15957	15957		82.241	18.033	1	288680	+		8976	12847	5264	5293	9137	9137	504				-0.0016557483721726385
EGLRCVVL	8	Unmodified	_EGLRCVVL_					0	0	0		STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.75177001953125	2	444.752213	887.489873	0.55244	0.0002457	-1.4744	-0.00065576	-0.92199	-0.00041006	444.75180205017034	39.081	0.21387	39.081	38.982	39.196	0					15	7	3	0	0	0	0.41952	1	15364	15364		68.485	2.6815	1	117840			8977	4231	5265	5294	9138	9138					0.04162746370968762
EGLRLLLSL	9	Unmodified	_EGLRLLLSL_					0	0	0		ENST00000598820.5_1_19:50062217-50063928:-|nuORF;ENST00000598839.1_1_19:50062214-50063421:-|nuORF;ENST00000593345.1_1_19:50063082-50063928:-|nuORF	ENST00000598820.5_1_19:50062217-50063928:-|nuORF	ENST00000598820.5_1_19:50062217-50063928:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.32122802734375	2	507.321317	1012.62808	-0.64464	-0.00032704	0.6324	0.00032083	-0.012238	-6.2084E-06	507.3215579602763	26.002	0.13312	26.002	25.93	26.063	0					8	4	2	0	0	0	0.16002	1	8125	8125		66.429	0.96389	1	214410			8978	10983	5266	5295	9139	9139					0.12227192891100458
EGLRLRMK	8	Unmodified	_EGLRLRMK_					0	0	0			REV__ENST00000230895.10_2_5:10680754-10680856:-|nuORF	REV__ENST00000230895.10_2_5:10680754-10680856:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.7964782714844	2	501.797486	1001.58042	0.46538	0.00023353	-3.2378	-0.0016247	-2.7725	-0.0013912	501.7958981609755	38.687	0.080326	38.687	38.632	38.712	0					6	4	2	0	0	0	0.72381	1	12611	12611		30.504	0	1	40666	+		8979	17914	5267	5296	9140	9140					0.07969215419245756
EGLSLYRDI	9	Unmodified	_EGLSLYRDI_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.28271484375	2	533.282389	1064.55022	-0.41397	-0.00022076	1.1731	0.00062557	0.75908	0.00040481	533.2829406351917	27.256	0.66569	27.256	27.017	27.682	0					48	23	3	0	0	0	0.30951	1	8631	8631		49.442	1.482	1	257230	+		8980	13940	5268	5297	9141	9141					0.020531352350417365
EGLSRTVVY	9	Unmodified	_EGLSRTVVY_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.27734375	2	512.277106	1022.53966	1.2473	0.00063897	0.096394	4.938E-05	1.3437	0.00068835	512.2772263754348	42.659	0.20727	42.659	42.559	42.767	0					17	10	2	0	0	0	0.47473	1	16730	16730		35.152	2.3396	1	83571			8981	5776	5269	5298	9142	9142					0.0292915258062294
EGLSSTRAQR	10	Unmodified	_EGLSSTRAQR_					0	0	0		ENST00000378078.4_1_9:35756525-35756705:+|nuORF	ENST00000378078.4_1_9:35756525-35756705:+|nuORF	ENST00000378078.4_1_9:35756525-35756705:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7938232421875	2	552.791444	1103.56833	3.6588	0.0020225	0.65365	0.00036133	4.3124	0.0023839	552.7917492272941	14.786	0.31786	14.786	14.677	14.995	0					9	6	2	0	0	0	0.41384	1	3767	3767		54.722	1.3709	1	990510			8982	9061	5270	5299	9143	9143					0.020692702097449
EGLVHISEL	9	Unmodified	_EGLVHISEL_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF;DHX8|p.R302W|1|0.06|ENSG00000067596|chr17:43493485-43493485|C/T|missense_variant	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.77593994140625	2	498.771657	995.528761	0.2589	0.00012913	1.0943	0.00054578	1.3532	0.00067492	498.77239028808214	28.265	0.53773	28.265	27.956	28.493	0					38	18	3	0	0	0	0.19605	1	8811	8811		37.159	0	1	320880			8983	1411	5271	5300	9144	9144					0.030817502063200664
EGMHRGSQN	9	Oxidation (M)	_EGM(Oxidation (M))HRGSQN_		EGM(1)HRGSQN		EGM(77)HRGSQN	0	0	1		ENST00000487950.1_1_6:37321854-37328319:+|nuORF;ENST00000373479.8_1_6:37321761-37321914:+|nuORF	ENST00000487950.1_1_6:37321854-37328319:+|nuORF	ENST00000487950.1_1_6:37321854-37328319:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2210083007812	2	516.219797	1030.42504	1.5234	0.0007864	1.0562	0.00054522	2.5796	0.0013316	516.220414447544	18.362	0.21707	18.362	18.254	18.471	0					9	4	3	0	0	0	0.10915	1	5474	5474		77.318	8.5308	1	381210			8984	8996	5272	5301	9145	9145		358			-0.08895480172986936
EGMKGIVL	8	Unmodified	_EGMKGIVL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant;nc|ENSG00000145623|Q99650-2|OSMR;OSMR|p.T617Qfs*20|4|0.4|ENSG00000145623|chr5:38923227-38923227|A/-|frameshift_variant	ENSG00000145623|ENST00000274276|OSMR;REV__SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.7413635253906	2	423.741314	845.468075	0.87812	0.0003721	-1.3369	-0.00056652	-0.45882	-0.00019442	423.74083181420633	37.713	0.34596	37.713	37.591	37.937	0					25	11	3	0	0	0	0.44433	1	14749	14749		65.803	0	1	412970			8985	4679;13834	5273	5302	9146	9146					0.03915941622392438
EGMQNLAPN	9	Unmodified	_EGMQNLAPN_					0	0	0		nc|ENSG00000104365|O14920-3|IKBKB;IKBKB|p.R404Lfs*5|1|0.04|ENSG00000104365|chr8:42317741-42317742|-/T|frameshift_variant;IKBKB|p.P405Sfs*5|1|0.04|ENSG00000104365|chr8:42317742-42317743|-/TTCA|frameshift_variant;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;IKBKB|p.G558Efs*6|1|0.35|ENSG00000104365|chr8:42320824-42320824|G/-|frameshift_variant;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2239685058594	2	487.224017	972.43348	-0.5387	-0.00026247	-0.36153	-0.00017615	-0.90023	-0.00043861	487.2242836944043	26.855	0.31469	26.855	26.654	26.968	0					12	6	3	0	0	0	0.20551	1	9556	9556		60.972	9.6365	1	233770			8986	2280	5274	5303	9147	9147					-0.05383926256365612
EGMRKTIT	8	Oxidation (M)	_EGM(Oxidation (M))RKTIT_		EGM(1)RKTIT		EGM(72)RKTIT	0	0	1		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7741394042969	2	476.250034	950.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.197	1	22.197	21.697	22.697	0								0	0	0	1.7419	1	6571	6571		71.877	11.759	1				8987	4286	5275	5304	9148	9148		176			0.0082923715740435
EGNAECRCR	9	Carbamidomethyl (C)	_EGNAECRC(Carbamidomethyl (C))R_	EGNAEC(0.026)RC(0.974)R		EGNAEC(-16)RC(16)R		0	1	0			REV__ENSG00000188730|ENST00000340652|VWC2	REV__ENSG00000188730|ENST00000340652|VWC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7288818359375	2	547.726932	1093.43931	3.8341	0.0021001	-0.7057	-0.00038653	3.1284	0.0017135	547.7267254578503	20.369	1.068	20.369	19.607	20.675	0					41	21	3	0	0	0	0.2873	1	6520	6520		51.335	7.2187	2	3679500	+		8988	17186	5276	5305	9149	9149	613				-0.10367151016339449
EGNAGAVKLA	10	Unmodified	_EGNAGAVKLA_					0	0	0		nc|ENSG00000103034|Q9ULP0-7|NDRG4	nc|ENSG00000103034|Q9ULP0-7|NDRG4	nc|ENSG00000103034|Q9ULP0-7|NDRG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.25567626953125	2	465.256174	928.497795	-0.51826	-0.00024113	0.62869	0.0002925	0.11042	5.1374E-05	465.2565343367267	23.953	0.20538	23.953	23.888	24.093	0					7	5	2	0	0	0	0.63224	1	7426	7426		30.318	7.2752	1	62386			8989	11465	5277	5306	9150	9150					0.030685968920806772
EGNELTKTLIK	11	Unmodified	_EGNELTKTLIK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	623.3561401367188	2	623.356085	1244.69762	1.2677	0.00079023	-1.008	-0.00062833	0.25972	0.0001619	623.3554788016166	35.387	0.33129	35.387	35.281	35.613	0					21	9	4	0	0	0	0.093595	1	13702	13702		91.265	3.0883	1	799640			8990	8001	5278	5307	9151	9151					0.08505607049187347
EGNELTKTLIK	11	Unmodified	_EGNELTKTLIK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	623.356201171875	2	623.356085	1244.69762	0.5019	0.00031286	-0.39842	-0.00024836	0.10347	6.45E-05	623.3557753440557	35.322	0.32187	35.322	35.213	35.535	0					15	6	4	0	0	0	0.07149	1	13639	13639		96.665	3.5218	1	1259900			8991	8001	5278	5307	9152	9152					0.08505607049187347
EGNGQLFILG	10	Unmodified	_EGNGQLFILG_					0	0	0			REV__ENST00000583478.1_1_17:61514659-61514908:-|nuORF	REV__ENST00000583478.1_1_17:61514659-61514908:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.276611328125	2	524.277106	1046.53966	0.71443	0.00037456	-0.26731	-0.00014014	0.44713	0.00023442	524.2767975010795	18.884	0.38492	18.884	18.646	19.031	0					33	11	4	0	0	0	0.52707	1	4727	4727		42.396	42.396	1	551340	+		8992	20465	5279	5308	9153	9153					0.01825152580613576
EGNHRNTR	8	Unmodified	_EGNHRNTR_					0	0	0		nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-2|BCLAF3	nc|ENSG00000173681|A2AJT9-2|BCLAF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2398681640625	2	492.241921	982.469289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.619	1	12.619	12.119	13.119	0								0	0	0	1.7419	1	2884	2884		42.396	0	1				8993	6443	5280	5309	9154	9154					-0.022647079644798396
EGNLEKPK	8	Unmodified	_EGNLEKPK_					0	0	0			REV__ENSG00000226430|ENST00000530447|USP17L7	REV__ENSG00000226430|ENST00000530447|USP17L7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.75079345703125	2	457.750724	913.486896	-0.40265	-0.00018431	-0.2533	-0.00011595	-0.65596	-0.00030026	457.75063903898075	14.302	0.58107	14.302	13.844	14.425	0					51	27	3	0	0	0	0.46013	1	2953	2953		64.207	0	1	418510	+		8994	17629	5281	5310	9155	9155					0.026691945178072274
EGNPVAINL	9	Unmodified	_EGNPVAINL_					0	0	0			REV__nc|ENSG00000100271|O95922-4|TTLL1	REV__nc|ENSG00000100271|O95922-4|TTLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2527770996094	2	463.750724	925.486896	-0.38703	-0.00017949	0.62705	0.00029079	0.24001	0.00011131	463.75083134182375	34.885	0.20205	34.885	34.795	34.997	0					10	7	2	0	0	0	0.26904	1	12376	12376		53.351	3.9099	1	69282	+		8995	13530	5282	5311	9156	9156					0.021171945178025453
EGNRVCGAGYG	11	Unmodified	_EGNRVCGAGYG_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1;PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7402954101562	2	541.737822	1081.46109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.965	1	23.965	23.465	24.465	0								0	0	0	0.43551	1	8327	8327		29.15	1.2673	1				8996	11644	5283	5312	9157	9157					-0.07638022996115978
EGNTCRVDS	9	Unmodified	_EGNTCRVDS_					0	0	0			REV__GRM7|p.E384Kfs*28|1|0.36|ENSG00000196277|chr3:7415132-7415132|A/-|frameshift_variant	REV__GRM7|p.E384Kfs*28|1|0.36|ENSG00000196277|chr3:7415132-7415132|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7072448730469	2	490.708731	979.402908	-1.2887	-0.0006324	-2.3497	-0.001153	-3.6385	-0.0017854	490.7074832962428	16.059	0.098329	16.059	15.997	16.096	0					5	3	2	0	0	0	0.41113	1	3779	3779		40.778	3.6191	1	78524	+		8997	17239	5284	5313	9158	9158					-0.08761704641392498
EGNTDLHEH	9	Unmodified	_EGNTDLHEH_					0	0	0		ENST00000437864.1_1_9:100396806-100398280:-|nuORF	ENST00000437864.1_1_9:100396806-100398280:-|nuORF	ENST00000437864.1_1_9:100396806-100398280:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2261352539062	2	526.225602	1050.43665	0.47209	0.00024842	0.0078782	4.1457E-06	0.47996	0.00025257	526.2257334518182	16.11	0.1502	16.11	16.045	16.196	0					9	5	2	0	0	0	0.30951	1	3790	3790		49.442	13.823	1	158520			8998	9542	5285	5314	9159	9159					-0.08654959878003865
EGNTDLHEH	9	Unmodified	_EGNTDLHEH_					0	0	0		ENST00000437864.1_1_9:100396806-100398280:-|nuORF	ENST00000437864.1_1_9:100396806-100398280:-|nuORF	ENST00000437864.1_1_9:100396806-100398280:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2262573242188	2	526.225602	1050.43665	0.45933	0.00024171	0.72643	0.00038227	1.1858	0.00062398	526.225971374478	16.512	0.40897	16.512	16.368	16.777	0					31	14	3	0	0	0	0.48389	1	3969	3969		34.173	2.2177	1	2846300			8999	9542	5285	5314	9160	9160					-0.08654959878003865
EGNTDLHEH	9	Unmodified	_EGNTDLHEH_					0	0	0		ENST00000437864.1_1_9:100396806-100398280:-|nuORF	ENST00000437864.1_1_9:100396806-100398280:-|nuORF	ENST00000437864.1_1_9:100396806-100398280:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2256469726562	2	526.225602	1050.43665	1.7662	0.00092943	-1.4278	-0.00075136	0.3384	0.00017808	526.2248014255497	16.721	0.80309	16.721	16.515	17.318	0					44	16	5	0	0	0	0.2873	1	4844	4844		51.335	5.3632	1	19193000			9000	9542	5285	5314	9161	9161					-0.08654959878003865
EGNVFMYY	8	Unmodified	_EGNVFMYY_					0	0	0		ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2186279296875	2	511.718036	1021.42152	-0.13658	-6.9893E-05	0.11479	5.8741E-05	-0.021792	-1.1151E-05	512.2197156716295	16.827	0.1189	16.827	16.77	16.888	0					9	5	2	0	0	0	0.8006	1	3905	3905		20.482	0.48506	1	56612			9001	2755	5286	5315	9162	9162					-0.08833542999548172
EGNVKLNM	8	Unmodified	_EGNVKLNM_					0	0	0			REV__ATXN2L|p.S217L|1|0.12|ENSG00000168488|chr16:28826895-28826895|C/T|missense_variant	REV__ATXN2L|p.S217L|1|0.12|ENSG00000168488|chr16:28826895-28826895|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7312927246094	2	452.731477	903.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.36	1	41.36	40.86	41.86	0								0	0	0	1.7419	1	16447	16447		53.351	0	1		+		9002	12262	5287	5316	9163	9163					-0.00718434388352307
EGPARKGAAAI	11	Unmodified	_EGPARKGAAAI_					0	0	0		PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1;PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7947998046875	2	520.795998	1039.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.342	1	26.342	25.842	26.842	0								0	0	0	0.39691	1	8274	8274		37.812	3.639	1				9003	2231	5288	5317	9164	9164					0.05923663566090909
EGPELRLAQ	9	Unmodified	_EGPELRLAQ_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.185546875	3	338.185579	1011.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.759	1	18.759	18.259	19.259	0								0	0	0	0.35899	1	4722	4722		17.468	0	1		+		9004	13072	5289	5318	9165	9165					0.02960268437857394
EGPEPEDVHL	10	Unmodified	_EGPEPEDVHL_					0	0	0		ENST00000504520.6_1_4:83821685-83821766:-|nuORF	ENST00000504520.6_1_4:83821685-83821766:-|nuORF	ENST00000504520.6_1_4:83821685-83821766:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.2569580078125	2	561.259111	1120.50367	-0.42409	-0.00023802	-3.3431	-0.0018764	-3.7672	-0.0021144	561.2576136932672	16.145	0.09403	16.145	16.064	16.158	0					5	3	2	0	0	0	0.75796	1	3795	3795		11.511	0.41426	1	127560			9005	10174	5290	5319	9166	9166					-0.051763493868975274
EGPIGHLGP	9	Unmodified	_EGPIGHLGP_					0	0	0			REV__ENST00000483338.1_1_X:107826116-107869594:+|nuORF	REV__ENST00000483338.1_1_X:107826116-107869594:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7321472167969	2	438.732335	875.450116	-0.37803	-0.00016585	0.25609	0.00011236	-0.12194	-5.35E-05	438.73244146934854	26.747	0.44623	26.747	26.564	27.01	0					24	10	3	0	0	0	0.21116	1	9236	9236		60.294	10.269	1	444530	+		9006	12562	5291	5320	9167	9167					0.007409426919025464
EGPLLCLGKE	10	Unmodified	_EGPLLCLGKE_					0	0	0			REV__SP140|p.K364Ifs*47|1|0.04|ENSG00000079263|chr2:230253348-230253349|-/TTCTC|frameshift_variant	REV__SP140|p.K364Ifs*47|1|0.04|ENSG00000079263|chr2:230253348-230253349|-/TTCTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.78125	2	529.781167	1057.54778	1.7354	0.00091936	-2.7121	-0.0014368	-0.97676	-0.00051747	529.7798275118798	41.86	0.20437	41.86	41.783	41.987	0					16	9	2	0	0	0	0.4758	1	16443	16443		47.96	5.5634	1	110430	+		9007	13281	5292	5321	9168	9168					0.021309635057150444
EGPLRSPK	8	Unmodified	_EGPLRSPK_					0	0	0			REV__sp|P09695|TRS1_HCMVAProteinHHLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRS1PE=1SV=1	REV__sp|P09695|TRS1_HCMVAProteinHHLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRS1PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2102355957031	2	442.253434	882.492316	0.49494	0.00021889	-0.25132	-0.00011115	0.24362	0.00010774	442.25341173723587	21.827	0.71274	21.827	21.458	22.17	0					30	14	3	0	0	0	0.74405	1	7302	7302		27.882	1.0861	1	346400	+		9008	21579	5293	5322	9169	9169					0.046369181002773985
EGPPFPLI	8	Unmodified	_EGPPFPLI_					0	0	0		ENST00000548872.5_1_12:50222327-50222528:+|nuORF	ENST00000548872.5_1_12:50222327-50222528:+|nuORF	ENST00000548872.5_1_12:50222327-50222528:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.24462890625	2	435.242004	868.469455	2.6336	0.0011462	2.4391	0.0010616	5.0727	0.0022079	435.24293674296456	21.863	0.31712	21.863	21.653	21.97	0					9	6	2	0	0	0	0.75243	1	7200	7200		26.796	2.2921	1	471310			9009	10603	5294	5323	9170	9170					0.0299589898281738
EGPPPPPLRRP	11	Unmodified	_EGPPPPPLRRP_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	606.8450927734375	2	606.846022	1211.67749	-1.9338	-0.0011735	0.88835	0.00053909	-1.0454	-0.00063441	606.8462677621812	36.206	0.46618	36.206	35.948	36.415	0					26	17	2	0	0	0	0.78498	1	12913	12913		18.262	0.89712	1	60474	+		9010	16691	5295	5324	9171	9171					0.08011900899896318
EGPPYDWEL	9	Unmodified	_EGPPYDWEL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2476806640625	2	553.245472	1104.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.302	1	11.302	10.802	11.802	0								0	0	0	0.39802	1	2281	2281		11.511	1.8054	1				9011	1988	5296	5325	9172	9172					-0.07166832927282485
EGPQADEGPS	10	Unmodified	_EGPQADEGPS_					0	0	0			REV__nc|ENSG00000174516|Q8N2H9-4|PELI3	REV__nc|ENSG00000174516|Q8N2H9-4|PELI3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.28717041015625	2	493.706711	985.398869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.451	1	21.451	20.951	21.951	0								0	0	0	0.37602	1	6221	6221		37.812	2.6108	1		+		9012	16571	5297	5326	9173	9173					-0.09441470863464474
EGPQLTMAL	9	Unmodified	_EGPQLTMAL_					0	0	0			REV__AluSz6_dup5069|chr2:47377230-47377536:-|1.0621030440935346|0.2745788286115291|1.95|483.0|14|3|sense	REV__AluSz6_dup5069|chr2:47377230-47377536:-|1.0621030440935346|0.2745788286115291|1.95|483.0|14|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.24658203125	2	480.24696	958.479368	0.49553	0.00023797	-1.0246	-0.00049204	-0.52903	-0.00025407	480.24643541441236	36.988	0.29073	36.988	36.824	37.115	0					14	8	2	0	0	0	0.24095	1	13969	13969		56.721	3.3696	1	84231	+		9013	12150	5298	5327	9174	9174					-0.0015328107413097314
EGPQPPMIL	9	Unmodified	_EGPQPPMIL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000528584.5_1_15:28900509-28916776:+|nuORF;ENST00000530420.5_1_15:28900570-28916776:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2577819824219	2	491.257328	980.500103	-0.56412	-0.00027713	-0.16963	-8.333E-05	-0.73374	-0.00036046	491.2573197648854	36.236	0.31381	36.236	36.081	36.395	0					14	6	3	0	0	0	0.13519	1	14028	14028		71.296	5.4925	1	316520			9014	3560;9465	5299	5328	9175	9175					0.009073093055576464
EGPSKTVREV	10	Unmodified	_EGPSKTVREV_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.298095703125	2	551.29857	1100.58259	0.28565	0.00015748	-1.3734	-0.00075717	-1.0878	-0.0005997	551.2979317465333	32.118	0.14468	32.118	32.047	32.191	0					9	6	2	0	0	0	0.35046	1	10704	10704		61.691	13.09	1	61905	+		9015	13397	5300	5329	9176	9176					0.03631922638055585
EGPTFLISI	9	Unmodified	_EGPTFLISI_					0	0	0		nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.76934814453125	2	488.771126	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.989	1	23.989	23.489	24.489	0								0	0	0	0.27025	1	7410	7410		18.324	0	1				9016	11743	5301	5330	9177	9177					0.03895535837443731
EGPTGKQSI	9	Unmodified	_EGPTGKQSI_					0	0	0			REV__COL4A4|p.A966T|1|0.32|ENSG00000081052|chr2:227052377-227052377|C/T|missense_variant	REV__COL4A4|p.A966T|1|0.32|ENSG00000081052|chr2:227052377-227052377|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7400207519531	2	458.740357	915.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.581	1	34.581	34.081	35.081	0								0	0	0	0.17415	1	12252	12252		54.722	1.7857	1		+		9017	12561	5302	5331	9178	9178					0.005046041381433497
EGPTNLAR	8	Unmodified	_EGPTNLAR_					0	0	0			REV__nc|ENSG00000293543|Q6B8I1-4|DUSP13A	REV__nc|ENSG00000293543|Q6B8I1-4|DUSP13A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2270812988281	2	429.227417	856.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.166	1	12.166	11.666	12.666	0								0	0	0	1.7419	1	2527	2527		37.159	1.5408	1		+		9018	21264	5303	5332	9179	9179					0.0063175468651479605
EGPVQSITVTL	11	Unmodified	_EGPVQSITVTL_					0	0	0			REV__ENSG00000188549|ENST00000397536|CCDC9B	REV__ENSG00000188549|ENST00000397536|CCDC9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.8789367675781	3	381.880044	1142.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.968	1	12.968	12.468	13.468	0								0	0	0	0.45674	1	2894	2894		19.263	0.73163	1		+		9019	17173	5304	5333	9180	9180					0.05269960095074566
EGQDVVEAIL	10	Unmodified	_EGQDVVEAIL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000555808.1_1_12:56815681-56815917:-|nuORF;ENST00000557589.1_1_12:56815505-56817595:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7808837890625	2	536.779679	1071.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.554	1	34.554	34.054	35.054	0								0	0	0	0.17308	1	13255	13255		67.494	2.0283	1				9020	2675	5305	5334	9181	9181					0.011894116525809295
EGQGLLLKI	9	Unmodified	_EGQGLLLKI_					0	0	0		ENST00000393892.7_1_17:40127921-40128083:+|nuORF	ENST00000393892.7_1_17:40127921-40128083:+|nuORF	ENST00000393892.7_1_17:40127921-40128083:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7998962402344	2	485.800217	969.585882	-0.27171	-0.00013199	-0.10698	-5.1971E-05	-0.37869	-0.00018397	485.8001496435819	33.081	0.48508	33.081	32.814	33.3	0					37	13	4	0	0	0	0.1424	1	12177	12177		69.628	5.4204	1	880260			9021	9167	5306	5335	9182	9182					0.09987217482705546
EGQILRLLA	9	Unmodified	_EGQILRLLA_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.81182861328125	2	506.811116	1011.60768	0.81281	0.00041194	-0.75599	-0.00038314	0.056815	2.8794E-05	506.81072565320704	29.239	0.1974	29.239	29.125	29.323	0					13	7	2	0	0	0	0.34452	1	9199	9199		47.657	6.8792	1	109840	+		9022	13060	5307	5336	9183	9183					0.1023402223128187
EGQILRLLA	9	Unmodified	_EGQILRLLA_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.8111267089844	2	506.811116	1011.60768	0.85928	0.00043549	0.45635	0.00023128	1.3156	0.00066678	506.8106713270939	29.554	0.42154	29.554	29.324	29.745	0					37	10	4	0	0	0	0.082776	1	10530	10530		87.696	11.527	1	861870	+		9023	13060	5307	5336	9184	9184					0.1023402223128187
EGQILRLLA	9	Unmodified	_EGQILRLLA_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.8111267089844	2	506.811116	1011.60768	-0.66556	-0.00033731	1.8439	0.0009345	1.1783	0.00059719	506.81155240914774	29.276	0.25438	29.276	29.157	29.411	0					29	10	4	0	0	0	0.076532	1	9524	9524		90.37	13.052	1	254360	+		9024	13060	5307	5336	9185	9185					0.1023402223128187
EGQILRLLA	9	Unmodified	_EGQILRLLA_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.8109130859375	2	506.811116	1011.60768	1.2753	0.00064635	-0.92132	-0.00046693	0.35402	0.00017942	506.8103253423765	29.455	0.55694	29.455	29.241	29.798	0					34	11	4	0	0	0	0.022525	1	10776	10776		113.41	6.7285	1	1636500	+		9025	13060	5307	5336	9186	9186					0.1023402223128187
EGQIYQLLN	9	Unmodified	_EGQIYQLLN_					0	0	0		FAM81A|p.S183Y|1|0.39|ENSG00000157470|chr15:59508867-59508867|C/A|missense_variant	FAM81A|p.S183Y|1|0.39|ENSG00000157470|chr15:59508867-59508867|C/A|missense_variant	FAM81A|p.S183Y|1|0.39|ENSG00000157470|chr15:59508867-59508867|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.287109375	2	539.282389	1076.55022	3.4159	0.0018421	4.164	0.0022456	7.5799	0.0040877	539.2841657177052	41.087	0.18565	41.087	40.959	41.145	0					6	4	2	0	0	0	0.21263	1	16314	16314		60.118	1.8883	1	178820			9026	11131	5308	5337	9187	9187					0.01501135235048423
EGQLGPAERAK	11	Unmodified	_EGQLGPAERAK_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.87689208984375	3	385.875405	1154.60439	3.5088	0.001354	0.35783	0.00013808	3.8667	0.0014921	385.87552114683496	28.355	0.18069	28.355	28.269	28.45	0					12	6	3	0	0	0	0.74306	1	9143	9143		21.032	0	1	157440			9027	6014	5309	5338	9188	9188					0.0332672738659312
EGQLQQIQK	9	Unmodified	_EGQLQQIQK_					0	0	0			REV__nc|ENSG00000128596|Q96JN2-3|CCDC136	REV__nc|ENSG00000128596|Q96JN2-3|CCDC136	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2926635742188	2	536.293288	1070.57202	0.29216	0.00015668	-0.85396	-0.00045797	-0.5618	-0.00030129	536.2927361941987	24.232	0.36759	24.232	24.079	24.447	0					15	7	3	0	0	0	0.28897	1	8446	8446		51.193	1.6567	1	335370	+		9028	12354	5310	5339	9189	9189					0.039559399836207376
EGQLQQVVF	9	Unmodified	_EGQLQQVVF_					0	0	0		WDR81|p.P1456Q|1|0.4|ENSG00000167716|chr17:1732709-1732709|C/A|missense_variant	WDR81|p.P1456Q|1|0.4|ENSG00000167716|chr17:1732709-1732709|C/A|missense_variant	WDR81|p.P1456Q|1|0.4|ENSG00000167716|chr17:1732709-1732709|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.85369873046875	3	349.85383	1046.53966	0.17182	6.0114E-05	-0.45359	-0.00015869	-0.28177	-9.8577E-05	349.8536752736653	18.863	0.28886	18.863	18.678	18.967	0					20	8	4	0	0	0	0.61124	1	4757	4757		32.812	32.812	1	429370			9029	23115	5311	5340	9190	9190					0.01825152580613576
EGQLQREKR	9	Unmodified	_EGQLQREKR_					0	0	0		ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.8789978027344	3	381.879149	1142.61562	0.62541	0.00023883	-0.62359	-0.00023814	0.0018171	6.9391E-07	381.878834632848	12.97	0.28913	12.97	12.87	13.159	0					10	6	2	0	0	0	0.58342	1	2905	2905		23.523	0	1	117480			9030	8078	5312	5341	9191	9191					0.05001549480766698
EGQMTKRR	8	Unmodified	_EGQMTKRR_					0	0	0			REV__nc|ENSG00000204463|P46379-2|BAG6	REV__nc|ENSG00000204463|P46379-2|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.26708984375	2	503.26655	1004.51855	-0.87921	-0.00044248	0.20325	0.00010229	-0.67596	-0.00034019	503.26737373122717	15.984	0.066635	15.984	15.953	16.02	0					4	2	2	0	0	0	0.65148	1	3751	3751		40.778	7.2626	1	68740	+		9031	17486	5313	5342	9192	9192					0.016468640001107815
EGQQQVLLSR	10	Unmodified	_EGQQQVLLSR_					0	0	0			REV__ENSG00000233757|ENST00000425953|ZNF892	REV__ENSG00000233757|ENST00000425953|ZNF892	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.54632568359375	3	386.547288	1156.62004	-0.63847	-0.0002468	-1.4092	-0.00054471	-2.0476	-0.00079151	386.5468349097224	26.357	0.7691	26.357	26.25	27.019	0					33	15	3	0	0	0	0.61187	1	9318	9318		45.022	23.99	1	336100	+		9032	17652	5314	5343	9193	9193					0.04799013903652849
EGQRLVAAL	9	Unmodified	_EGQRLVAAL_					0	0	0			REV__URB2|p.L1329V|1|0.31|ENSG00000135763|chr1:229647588-229647588|C/G|missense_variant	REV__URB2|p.L1329V|1|0.31|ENSG00000135763|chr1:229647588-229647588|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2771301269531	2	478.779816	955.545079	-0.66016	-0.00031607	-1.1361	-0.00054396	-1.7963	-0.00086003	478.7798978113144	16.755	0.65946	16.755	16.2	16.859	0					23	13	2	0	0	0	0.24095	1	4551	4551		56.721	6.6965	1	254630	+		9033	22264	5315	5344	9194	9194					0.06552876163061683
EGQTNLHLL	9	Unmodified	_EGQTNLHLL_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7742309570312	2	512.774731	1023.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.856	1	19.856	19.356	20.356	0								0	0	0	0.22075	1	5216	5216		49.442	10.189	1				9034	11595	5316	5345	9195	9195					0.024082684378640806
EGRAASARGL	10	Unmodified	_EGRAASARGL_					0	0	0		ENST00000421085.6_1_X:10163107-10174585:+|nuORF	ENST00000421085.6_1_X:10163107-10174585:+|nuORF	ENST00000421085.6_1_X:10163107-10174585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.27142333984375	2	494.270147	986.525741	2.7984	0.0013831	0.059885	2.9599E-05	2.8582	0.0014127	494.2701351061992	30.857	0.46039	30.857	30.747	31.207	0					15	9	3	0	0	0	0.536	1	11480	11480		41.427	41.427	1	1352400			9035	9398	5317	5346	9196	9196					0.0319391987218296
EGRAKLQQCGI	11	Unmodified	_EGRAKLQQCGI_					0	0	0			REV__ENSG00000143851|ENST00000691036|PTPN7	REV__ENSG00000143851|ENST00000691036|PTPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.5484619140625	3	401.548523	1201.62374	-0.12739	-5.1155E-05	0.24367	9.7845E-05	0.11627	4.669E-05	401.5486984667564	23.347	0.32257	23.347	23.251	23.574	0					13	7	2	0	0	0	0.71641	1	7123	7123		26.063	0	1	127400	+		9036	15212	5318	5347	9197	9197					0.03099360405894913
EGRCRVTL	8	Unmodified	_EGRCRVTL_					0	0	0		ENSG00000205730|ENST00000381440|ITPRIPL2;ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENSG00000205730|ENST00000381440|ITPRIPL2	ENSG00000205730|ENST00000381440|ITPRIPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2483825683594	2	467.250369	932.486184	-0.50523	-0.00023607	-3.5963	-0.0016804	-4.1015	-0.0019164	467.24856021921784	43.785	0.19777	43.785	43.746	43.944	0					9	6	2	0	0	0	0.41	1	17542	17542		69.628	8.6557	1	139260			9037	7758	5319	5348	9198	9198					0.017240765970996108
EGRGEPEVR	9	Unmodified	_EGRGEPEVR_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7598876953125	2	514.759612	1027.50467	0.1205	6.2028E-05	0.65562	0.00033749	0.77612	0.00039951	514.7598700255064	15.202	0.16947	15.202	15.138	15.307	0					8	5	2	0	0	0	0.026848	1	3266	3266		95.815	31.608	1	901340	+		9038	19482	5320	5349	9199	9199					-0.007980902273402535
EGRGEPEVR	9	Unmodified	_EGRGEPEVR_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7595825195312	2	514.759612	1027.50467	0.024672	1.27E-05	0.19143	9.8539E-05	0.2161	0.00011124	514.759637886703	15.487	0.45884	15.487	15.397	15.856	0					17	11	3	0	0	0	0.037712	1	4015	4015		95.815	35.697	1	3989800	+		9039	19482	5320	5349	9200	9200					-0.007980902273402535
EGRGEPEVR	9	Unmodified	_EGRGEPEVR_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.759765625	2	514.759612	1027.50467	-1.583	-0.00081488	1.7945	0.00092374	0.21147	0.00010886	514.7605903133722	15.26	0.17556	15.26	15.2	15.375	0					13	5	4	0	0	0	0.026848	1	3387	3387		107.01	27.295	1	579360	+		9040	19482	5320	5349	9201	9201					-0.007980902273402535
EGRITPEL	8	Unmodified	_EGRITPEL_					0	0	0		nc|ENSG00000156515|P19367-2|HK1;nc|ENSG00000156515|P19367-4|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.75103759765625	2	457.750724	913.486896	-0.63543	-0.00029087	0.4924	0.0002254	-0.14303	-6.5472E-05	457.75086167188624	14.558	1.0202	14.558	14.003	15.023	0					62	25	6	0	0	0	0.63077	1	3639	3639		44.117	1.2525	1	2351100			9041	11597	5321	5350	9202	9202					0.026691945178072274
EGRLFYRH	8	Unmodified	_EGRLFYRH_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;FREM2|p.V1156Gfs*14|1|0.4|ENSG00000150893|chr13:38690806-38690807|-/G|frameshift_variant;FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000183090|ENST00000329798|FREM3	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.283447265625	2	539.283057	1076.55156	0.24955	0.00013458	0.3551	0.0001915	0.60465	0.00032608	539.2834497923013	11.364	0.078533	11.364	11.305	11.384	0					8	4	2	0	0	0	0.59411	1	2181	2181		50.025	0	1	201710			9042	4937	5322	5351	9203	9203					0.016348141144590045
EGRLVYRYGGE	11	Unmodified	_EGRLVYRYGGE_					0	0	0		AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant;AGL|p.N1304Ifs*10|1|0.38|ENSG00000162688|chr1:99912472-99912472|A/-|frameshift_variant;AGL|p.K1407Nfs*8|1|0.39|ENSG00000162688|chr1:99915441-99915441|A/-|frameshift_variant;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.5541687011719	3	433.554443	1297.6415	-0.508	-0.00022025	-0.84191	-0.00036502	-1.3499	-0.00058526	433.55412703718844	24.347	0.13764	24.347	24.301	24.439	0					5	3	2	0	0	0	0.78029	1	7609	7609		19.263	0.73163	1	78597			9043	91	5323	5352	9204	9204					0.00458398932369164
EGRPHFKH	8	Unmodified	_EGRPHFKH_					0	0	0			REV__ENST00000397821.7_1_X:19554297-19554396:-|nuORF	REV__ENST00000397821.7_1_X:19554297-19554396:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.260986328125	2	504.262125	1006.5097	-2.0173	-0.0010173	-0.024461	-1.2335E-05	-2.0418	-0.0010296	504.2621068748583	26.913	0.16186	26.913	26.852	27.014	0					7	4	2	0	0	0	0.57171	1	8734	8734		42.396	42.396	1	194320	+		9044	18915	5324	5353	9205	9205					0.006702584259528521
EGRSHPRSK	9	Unmodified	_EGRSHPRSK_					0	0	0			REV__ENSG00000175470|ENST00000455566|PPP2R2D	REV__ENSG00000175470|ENST00000455566|PPP2R2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2825317382812	2	527.281046	1052.54754	0.10428	5.4985E-05	1.9512	0.0010288	2.0555	0.0010838	527.2816681694521	17.26	0.21049	17.26	17.134	17.344	0					13	5	3	0	0	0	0.24334	1	4843	4843		56.434	10.462	1	506570	+		9045	16614	5325	5354	9206	9206					0.023367246207499193
EGRSRRPSP	9	Unmodified	_EGRSRRPSP_					0	0	0		ENST00000602529.1_1_1:228463365-228463719:-|nuORF	ENST00000602529.1_1_1:228463365-228463719:-|nuORF	ENST00000602529.1_1_1:228463365-228463719:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2825317382812	2	521.281046	1040.54754	3.3854	0.0017647	-0.69117	-0.00036029	2.6942	0.0014044	521.2806527821281	30.755	0.61277	30.755	30.545	31.157	0					35	12	3	0	0	0	0.28897	1	11553	11553		51.193	51.193	1	10768000			9046	11047	5326	5355	9207	9207					0.028887246207432327
EGRSSRGSL	9	Unmodified	_EGRSSRGSL_					0	0	0		ENST00000504307.1_2_17:48249464-48258440:-|nuORF	ENST00000504307.1_2_17:48249464-48258440:-|nuORF	ENST00000504307.1_2_17:48249464-48258440:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.753173828125	2	474.746505	947.478456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.302	1	16.302	15.802	16.802	0								0	0	0	0.20989	1	4388	4388		49.536	0.094497	1				9047	10169	5327	5356	9208	9208					0.0026164060119526766
EGRTETTVT	9	Unmodified	_EGRTETTVT_					0	0	0		ENST00000459914.1_1_1:154247547-154248174:+|nuORF;nc|ENSG00000143575|O00165-5|HAX1;nc|ENSG00000143575|O00165-3|HAX1;ENSG00000143575|ENST00000328703|HAX1;nc|ENSG00000143575|O00165-2|HAX1	ENST00000459914.1_1_1:154247547-154248174:+|nuORF	ENST00000459914.1_1_1:154247547-154248174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2455749511719	2	497.246003	992.477453	-0.73979	-0.00036786	0.24131	0.00011999	-0.49848	-0.00024787	497.2463305916829	31.324	0.18142	31.324	31.244	31.426	0					10	4	3	0	0	0	0.3269	1	11792	11792		47.96	5.5634	1	133660			9048	4568	5328	5357	9209	9209					-0.019086185583660153
EGRTHTISL	9	Unmodified	_EGRTHTISL_					0	0	0		VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant;VWA8|p.G1575Efs*53|1|0.25|ENSG00000102763|chr13:41611729-41611729|C/-|frameshift_variant;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8;VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2744140625	2	507.272355	1012.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.93	1	41.93	41.43	42.43	0								0	0	0	0.24544	1	16705	16705		44.377	1.981	1				9049	2188	5329	5358	9210	9210					0.024393842950985345
EGRTKGIQSL	10	Unmodified	_EGRTKGIQSL_					0	0	0			REV__ENST00000526600.1_1_11:12960600-12960762:+|nuORF	REV__ENST00000526600.1_1_11:12960600-12960762:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.54144287109375	3	363.540134	1087.59857	1.1051	0.00040173	1.8417	0.00066955	2.9468	0.0010713	363.54097952626216	31.763	0.46243	31.763	31.554	32.017	0					18	9	4	0	0	0	0.59255	1	11921	11921		35.178	2.4277	1	556680	+		9050	19998	5330	5359	9211	9211					0.058276288749766536
EGRVQPML	8	Unmodified	_EGRVQPML_					0	0	0			REV__nc|ENSG00000125731|Q9BRG2-2|SH2D3A	REV__nc|ENSG00000125731|Q9BRG2-2|SH2D3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2477111816406	2	465.247295	928.480036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.286	1	29.286	28.786	29.786	0								0	0	0	1.7419	1	9521	9521		20.947	0.4651	1		+		9051	21009	5331	5360	9212	9212					0.012935583655803384
EGSDPAHIA	9	Unmodified	_EGSDPAHIA_					0	0	0		BANK1|p.T601Lfs*8|2|0.19|ENSG00000153064|chr4:102030160-102030160|A/-|frameshift_variant;nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	BANK1|p.T601Lfs*8|2|0.19|ENSG00000153064|chr4:102030160-102030160|A/-|frameshift_variant	BANK1|p.T601Lfs*8|2|0.19|ENSG00000153064|chr4:102030160-102030160|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.7091979980469	2	448.709057	895.40356	-1.1784	-0.00052875	1.3104	0.000588	0.13203	5.9244E-05	448.7097036129044	19.089	0.10055	19.089	19.026	19.126	0					6	3	2	0	0	0	0.5654	1	5104	5104		25.45	1.2474	1	105390			9052	275	5332	5361	9213	9213					-0.04832541930045409
EGSEDIIVVAL	11	Unmodified	_EGSEDIIVVAL_					0	0	0		nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-4|HCK	nc|ENSG00000101336|P08631-3|HCK	nc|ENSG00000101336|P08631-3|HCK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.81103515625	2	572.808436	1143.60232	3.3714	0.0019312	0.75882	0.00043466	4.1302	0.0023658	572.8090394830743	28.033	0.46496	28.033	27.878	28.343	0					28	9	5	0	0	0	0.11154	1	10093	10093		69.628	5.4204	1	7590100			9053	11462	5333	5362	9214	9214					0.03626253858169548
EGSELKKV	8	Unmodified	_EGSELKKV_					0	0	0		ENST00000460467.1_1_3:17051216-17052412:+|nuORF;PLCL2|p.E599Rfs*11|1|0.38|ENSG00000154822|chr3:17011137-17011137|A/-|frameshift_variant;PLCL2|p.D812*|1|0.26|ENSG00000154822|chr3:17011774-17011775|-/T|frameshift_variant;nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	ENST00000460467.1_1_3:17051216-17052412:+|nuORF	ENST00000460467.1_1_3:17051216-17052412:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2529296875	2	445.2531	888.491647	-0.18585	-8.2751E-05	-0.41801	-0.00018612	-0.60387	-0.00026887	445.2528775754146	22.617	0.50804	22.617	22.269	22.777	0					31	10	4	0	0	0	0.6088	1	7576	7576		47.657	6.8792	1	1196600			9054	5106	5334	5363	9215	9215					0.04294078660575451
EGSGVTLLRL	10	Unmodified	_EGSGVTLLRL_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8087768554688	2	522.806031	1043.59751	1.5121	0.00079054	1.195	0.00062476	2.7071	0.0014153	522.8066150820256	16.036	0.10508	16.036	15.951	16.056	0					5	3	2	0	0	0	0.49411	1	3712	3712		45.972	1.5951	1	69337	+		9055	17255	5335	5364	9216	9216					0.07745414506052839
EGSGYNTLA	9	Unmodified	_EGSGYNTLA_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.208740234375	2	456.208889	910.403226	-0.6012	-0.00027427	-0.0035181	-1.605E-06	-0.60471	-0.00027588	456.20889674812685	25.533	0.29974	25.533	25.404	25.704	0					14	7	3	0	0	0	0.1115	1	8747	8747		76.774	15.802	1	676520	+		9056	13274	5336	5365	9217	9217					-0.0555596164989538
EGSHERPPR	9	Unmodified	_EGSHERPPR_					0	0	0			REV__nc|ENSG00000189337|Q674X7-5|KAZN	REV__nc|ENSG00000189337|Q674X7-5|KAZN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7651977539062	2	532.765229	1063.5159	0.40762	0.00021717	-0.53252	-0.00028371	-0.12489	-6.654E-05	532.7652916160407	25.232	0.21933	25.232	25.143	25.362	0					14	6	4	0	0	0	0.42902	1	7586	7586		39.253	1.4413	1	398630	+		9057	19720	5337	5366	9218	9218					-0.013312681331854037
EGSHPVLY	8	Unmodified	_EGSHPVLY_					0	0	0		ENST00000451507.1_1_20:3869003-3869189:-|nuORF	ENST00000451507.1_1_20:3869003-3869189:-|nuORF	ENST00000451507.1_1_20:3869003-3869189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2257385253906	2	451.224342	900.434132	0.00037505	1.6923E-07	0.93288	0.00042094	0.93325	0.00042111	451.22470151032326	27.04	0.3151	27.04	26.943	27.258	0					18	11	2	0	0	0	0.66238	1	8274	8274		39.021	0.21535	1	41281			9058	9652	5338	5367	9219	9219					-0.02006763545011836
EGSIGTLLN	9	Unmodified	_EGSIGTLLN_					0	0	0			REV__ENST00000477927.1_1_2:33749528-33755971:+|nuORF	REV__ENST00000477927.1_1_2:33749528-33755971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.24774169921875	2	452.242732	902.470912	0.37164	0.00016807	-0.70934	-0.00032079	-0.3377	-0.00015272	452.24234314952747	23.63	0.50376	23.63	23.446	23.949	0					34	12	4	0	0	0	0.47038	1	7189	7189		35.618	3.6634	1	1858100	+		9059	19557	5339	5368	9220	9220					0.015774882809068913
EGSLDETGLGP	11	Unmodified	_EGSLDETGLGP_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7496337890625	2	537.751118	1073.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.599	1	14.599	14.099	15.099	0								0	0	0	0.30675	1	3822	3822		51.193	7.0759	1				9060	3560	5340	5369	9221	9221					-0.046120556238065546
EGSLIKLTA	9	Unmodified	_EGSLIKLTA_					0	0	0		ENSG00000166831|ENST00000300069|RBPMS2	ENSG00000166831|ENST00000300069|RBPMS2	ENSG00000166831|ENST00000300069|RBPMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2767639160156	2	466.276575	930.538597	0.22879	0.00010668	-0.32442	-0.00015127	-0.095636	-4.4593E-05	466.27642341395057	33.67	0.86275	33.67	33.231	34.094	0					53	22	3	0	0	0	0.42902	1	12374	12374		39.253	0	1	364730			9061	5932	5341	5370	9222	9222					0.07054938211706485
EGSLRNEL	8	Unmodified	_EGSLRNEL_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.23828125	2	459.237981	916.461409	-0.94182	-0.00043252	1.203	0.00055248	0.26122	0.00011996	459.2382265607479	24.493	0.28095	24.493	24.343	24.624	0					16	9	2	0	0	0	0.46013	1	7488	7488		64.207	4.089	1	110780	+		9062	13133	5342	5371	9223	9223					-0.00016280004626878508
EGSLVGDAFYA	11	Unmodified	_EGSLVGDAFYA_					0	0	0			REV__ENST00000521954.1_1_8:91804195-91916096:+|nuORF	REV__ENST00000521954.1_1_8:91804195-91916096:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.7648315429688	2	564.764029	1127.5135	0.34772	0.00019638	1.6894	0.0009541	2.0371	0.0011505	564.7650401542004	15.405	0.22155	15.405	15.269	15.49	0					11	5	3	0	0	0	0.77686	1	3982	3982		19.997	0.89325	1	268760	+		9063	14351	5343	5372	9224	9224					-0.04515161381505095
EGSLYGLSIA	10	Unmodified	_EGSLYGLSIA_					0	0	0		ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.26409912109375	2	505.263665	1008.51278	0.80417	0.00040632	-0.30838	-0.00015582	0.49579	0.0002505	505.2632941044035	24.746	0.41836	24.746	24.573	24.992	0					28	10	4	0	0	0	0.46215	1	8363	8363		49.442	1.5259	1	837610			9064	1047	5344	5373	9225	9225					0.008860439694444722
EGSPLGPLSGP	11	Unmodified	_EGSPLGPLSGP_					0	0	0		ENST00000358055.7_2_2:220492239-220492678:+|nuORF	ENST00000358055.7_2_2:220492239-220492678:+|nuORF	ENST00000358055.7_2_2:220492239-220492678:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.761474609375	2	505.761289	1009.50803	1.2458	0.00063006	-0.57336	-0.00028999	0.67239	0.00034007	505.76084503259904	37.456	1.0304	37.456	37.008	38.039	0					89	21	6	0	0	0	0.47622	1	14817	14817		45.972	1.5951	1	26712000			9065	8827	5345	5374	9226	9226					0.0036515982667424396
EGSRFAKR	8	Unmodified	_EGSRFAKR_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7608642578125	2	475.761958	949.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.817	1	18.817	18.317	19.317	0								0	0	0	1.7419	1	4749	4749		30.504	0.18592	1		+		9066	13956	5346	5375	9227	9227					0.032588387060854984
EGSRVVTL	8	Unmodified	_EGSRVVTL_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-6|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7453308105469	2	430.745442	859.476331	0.96816	0.00041703	-3.6884	-0.0015888	-2.7203	-0.0011717	430.74345567607685	29.051	0.6582	29.051	28.941	29.6	0					20	13	3	0	0	0	0.58597	1	10612	10612		51.335	0.14276	1	1057600			9067	3223	5347	5376	9228	9228					0.04097211863393113
EGSSTKITK	9	Unmodified	_EGSSTKITK_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7613830566406	2	475.761289	949.508025	-0.61811	-0.00029407	1.1966	0.00056931	0.57853	0.00027524	475.76221312292876	19.055	0.31477	19.055	18.946	19.26	0					16	6	3	0	0	0	0.090954	1	5811	5811		81.525	2.0359	1	313180	+		9068	16139	5348	5377	9229	9229					0.031251598266521796
EGTDVGKVK	9	Unmodified	_EGTDVGKVK_					0	0	0		nc|ENSG00000141161|Q8IWX7|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7|UNC45B	nc|ENSG00000141161|Q8IWX7|UNC45B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7558288574219	2	466.756007	931.497461	-0.1338	-6.2453E-05	-0.18116	-8.4555E-05	-0.31496	-0.00014701	466.7556839850032	24.121	0.16827	24.121	24.012	24.18	0					5	3	2	0	0	0	0.35021	1	8416	8416		45.972	3.5761	1	97672			9069	4431	5349	5378	9230	9230					0.028971771722467565
EGTEGEATEGL	11	Unmodified	_EGTEGEATEGL_					0	0	0		ENST00000598292.1_1_19:15511553-15512083:-|nuORF;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L	ENST00000598292.1_1_19:15511553-15512083:-|nuORF	ENST00000598292.1_1_19:15511553-15512083:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.73828125	2	546.738208	1091.46186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.248	1	22.248	21.748	22.748	0								0	0	0	0.38155	1	6518	6518		40.778	1.5253	1				9070	1045	5350	5379	9231	9231					-0.08020949866067895
EGTHARRHVA	10	Unmodified	_EGTHARRHVA_					0	0	0			REV__ENSG00000197037|ENST00000394152|ZSCAN25	REV__ENSG00000197037|ENST00000394152|ZSCAN25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.536376953125	3	378.535606	1132.58499	0.45848	0.00017355	1.877	0.00071052	2.3355	0.00088407	378.53616008542417	25.628	0.16845	25.628	25.569	25.738	0					5	3	2	0	0	0	0.7005	1	9134	9134		20.837	0.84038	1	179150	+		9071	17304	5351	5380	9232	9232					0.023998158863605568
EGTHLLLPK	9	Unmodified	_EGTHLLLPK_					0	0	0			REV__ASAH2|p.I504L|1|0.34|ENSG00000188611|chr10:50206002-50206002|T/G|missense_variant	REV__ASAH2|p.I504L|1|0.34|ENSG00000188611|chr10:50206002-50206002|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.05	1	44.05	43.55	44.55	0								0	0	0	0.35899	1	17189	17189		17.468	0	1		+		9072	12230	5352	5381	9233	9233					0.07810333339944009
EGTHLRQHQL	10	Unmodified	_EGTHLRQHQL_					0	0	0			REV__ENSG00000172888|ENST00000339296|ZNF621	REV__ENSG00000172888|ENST00000339296|ZNF621	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.8827209472656	3	406.882782	1217.62652	-2.2844	-0.00092948	1.4321	0.00058269	-0.85231	-0.00034679	406.88357264283854	27.361	0.38334	27.361	27.152	27.536	0					17	9	3	0	0	0	0.64162	1	8934	8934		29.17	0	1	151790	+		9073	16480	5353	5382	9234	9234					0.026409518550281064
EGTHLRRHQ	9	Unmodified	_EGTHLRRHQ_					0	0	0			REV__ENSG00000179930|ENST00000339948|ZNF648	REV__ENSG00000179930|ENST00000339948|ZNF648	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.3013916015625	2	567.29977	1132.58499	1.7649	0.0010012	1.1725	0.00066515	2.9373	0.0016663	567.3005115408092	25.667	0.17197	25.667	25.584	25.756	0					10	4	3	0	0	0	0.11898	1	8810	8810		75.043	0	1	474370	+		9074	16794	5354	5383	9235	9235					0.023998158863605568
EGTHLRRHQ	9	Unmodified	_EGTHLRRHQ_					0	0	0			REV__ENSG00000179930|ENST00000339948|ZNF648	REV__ENSG00000179930|ENST00000339948|ZNF648	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.301025390625	2	567.29977	1132.58499	1.675	0.00095025	1.1372	0.00064514	2.8122	0.0015954	567.3005342527184	25.608	0.22028	25.608	25.498	25.718	0					9	4	3	0	0	0	0.1424	1	9000	9000		69.628	0	1	392880	+		9075	16794	5354	5383	9236	9236					0.023998158863605568
EGTIKSVIL	9	Unmodified	_EGTIKSVIL_					0	0	0		tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2911071777344	2	480.292225	958.569897	0.054883	2.636E-05	-0.97624	-0.00046888	-0.92135	-0.00044252	480.29177492734044	24.465	0.17906	24.465	24.4	24.579	0					6	4	2	0	0	0	0.12239	1	7653	7653		74.255	2.9593	1	35436			9076	22681	5355	5384	9237	9237					0.08895511245816579
EGTLDKLSLQ	10	Unmodified	_EGTLDKLSLQ_					0	0	0			REV__nc|ENSG00000138080|Q9Y6C2-2|EMILIN1	REV__nc|ENSG00000138080|Q9Y6C2-2|EMILIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.5360412597656	3	368.536278	1102.587	-1.0052	-0.00037043	0.45908	0.00016919	-0.54607	-0.00020125	368.5365475067019	18.404	0.058201	18.404	18.36	18.418	0					4	2	2	0	0	0	0.72365	1	4799	4799		23.378	10.945	1	91442	+		9077	21037	5356	5385	9238	9238					0.03981387060957786
EGTPISCPGI	10	Unmodified	_EGTPISCPGI_					0	0	0			REV__tr|U7SSL9|U7SSL9_FUSNUDUF4241domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01311PE=4SV=1	REV__tr|U7SSL9|U7SSL9_FUSNUDUF4241domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01311PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2362365722656	2	487.236593	972.458632	-0.083331	-4.0602E-05	-1.0621	-0.00051752	-1.1455	-0.00055812	487.2361728472137	26.092	0.35922	26.092	25.983	26.343	0					15	7	3	0	0	0	0.44469	1	9309	9309		51.335	1.8939	1	360710	+		9078	21877	5357	5386	9239	9239					-0.028698714537881642
EGTRTTTLGH	10	Unmodified	_EGTRTTTLGH_					0	0	0			REV__ENSG00000277363|ENST00000617146|SRCIN1	REV__ENSG00000277363|ENST00000617146|SRCIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7754516601562	2	536.772719	1071.53089	1.0466	0.0005618	4.2172	0.0022637	5.2639	0.0028255	536.7745355538747	29.769	0.12032	29.769	29.694	29.814	0					5	3	2	0	0	0	0.64162	1	10069	10069		29.17	4.9673	1	71313	+		9079	17834	5358	5387	9240	9240					-0.002018210558617284
EGTSKFANL	9	Unmodified	_EGTSKFANL_					0	0	0		RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant;ENSG00000143344|ENST00000360851|RGL1;nc|ENSG00000143344|Q9NZL6-2|RGL1	RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7488098144531	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.552	1	24.552	24.052	25.052	0								0	0	0	0.32356	1	7673	7673		30.504	0	1				9080	4540	5359	5388	9241	9241					-0.002311093448156498
EGTVLLVKR	9	Unmodified	_EGTVLLVKR_					0	0	0		ENST00000602725.5_1_1:32373003-32373081:-|nuORF	ENST00000602725.5_1_1:32373003-32373081:-|nuORF	ENST00000602725.5_1_1:32373003-32373081:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8192138671875	2	507.818941	1013.62333	0.17262	8.7659E-05	0.027538	1.3984E-05	0.20016	0.00010164	507.81885795158547	29.625	0.16091	29.625	29.522	29.683	0					6	3	2	0	0	0	0.085655	1	10977	10977		66.429	16.893	1	130350			9081	11051	5360	5389	9242	9242					0.11706308748341598
EGVASKPIL	9	Unmodified	_EGVASKPIL_					0	0	0			REV__ENSG00000139626|ENST00000267082|ITGB7	REV__ENSG00000139626|ENST00000267082|ITGB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.27105712890625	2	457.271293	912.528032	-1.0296	-0.00047082	0.32574	0.00014895	-0.7039	-0.00032187	457.2714448789711	28.912	0.46314	28.912	28.824	29.287	0					28	18	2	0	0	0	0.35021	1	9360	9360		45.972	0	1	268350	+		9082	15037	5361	5390	9243	9243					0.06826955557301062
EGVERIMF	8	Oxidation (M)	_EGVERIM(Oxidation (M))F_		EGVERIM(1)F		EGVERIM(66)F	0	0	1		tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1	tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1	tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7434387207031	2	498.744585	995.474617	-0.67224	-0.00033528	-1.6171	-0.0008065	-2.2893	-0.0011418	498.74356917750225	17.368	0.39976	17.368	17.285	17.684	0					17	8	5	0	0	0	0.44433	1	5146	5146		65.803	15.779	1	790920			9083	22577	5362	5391	9244	9244		816			-0.023301652168811415
EGVESCDPAGA	11	Unmodified	_EGVESCDPAGA_					0	0	0			REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7072143554688	2	517.708396	1033.40224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.983	1	51.983	51.483	52.483	0								0	0	0	0.45674	1	18504	18504		20.947	0.95016	1		+		9084	16231	5363	5392	9245	9245					-0.11312544081124543
EGVEYIARA	9	Unmodified	_EGVEYIARA_					0	0	0		nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-2|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8	nc|ENSG00000074603|Q6V1X1-4|DPP8	nc|ENSG00000074603|Q6V1X1-4|DPP8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7538757324219	2	504.261456	1006.50836	1.2058	0.00060804	-1.8024	-0.00090889	-0.59662	-0.00030085	504.26053305555484	27.044	0.3196	27.044	26.936	27.255	0					17	6	4	0	0	0	0.19952	1	9620	9620		54.776	20.604	1	1860500			9085	1527	5364	5393	9246	9246					0.005365795465195333
EGVITKAIY	9	Unmodified	_EGVITKAIY_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.28497314453125	2	497.2844	992.554247	0.15498	7.7072E-05	-0.044312	-2.2036E-05	0.11067	5.5036E-05	497.28436477447144	39.712	0.15113	39.712	39.608	39.759	0					16	8	2	0	0	0	0.16002	1	12869	12869		66.429	2.222	1	122190			9086	4288	5365	5394	9247	9247					0.05767224728765541
EGVLGQGWDSK	11	Unmodified	_EGVLGQGWDSK_					0	0	0		nc|ENSG00000184730|Q0VD83-2|APOBR;APOBR|p.L868Ffs*2|1|0.24|ENSG00000184730|chr16:28497664-28497664|G/-|frameshift_variant;nc|ENSG00000184730|Q0VD83-3|APOBR;ENSG00000184730|ENST00000564831|APOBR	nc|ENSG00000184730|Q0VD83-2|APOBR	nc|ENSG00000184730|Q0VD83-2|APOBR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.86285400390625	3	392.527894	1174.56185	0.41387	0.00016246	-2.5947	-0.0010185	-2.1808	-0.00085604	392.8615747405131	16.416	0.41693	16.416	16.263	16.68	0					18	8	3	0	0	0	0.65378	1	4681	4681		32.034	2.4834	1	1249100			9087	188	5366	5395	9248	9248					-0.018446677416250168
EGVLHGIFY	9	Unmodified	_EGVLHGIFY_					0	0	0		ENST00000513881.5_1_5:122337738-122343441:+|nuORF;ENST00000503149.5_1_5:122301174-122343441:+|nuORF;ENSG00000064652|ENST00000261369|SNX24	ENST00000513881.5_1_5:122337738-122343441:+|nuORF	ENST00000513881.5_1_5:122337738-122343441:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7686157226562	2	517.768917	1033.52328	1.3071	0.00067676	-3.7866	-0.0019606	-2.4795	-0.0012838	517.7673925833466	34.91	0.11716	34.91	34.848	34.965	0					6	3	2	0	0	0	0.21116	1	13065	13065		60.294	10.269	1	75251			9088	1352	5367	5396	9249	9249					0.007860714145181191
EGVLHHLH	8	Unmodified	_EGVLHHLH_					0	0	0		nc|ENSG00000196715|Q8N0U8-2|VKORC1L1	nc|ENSG00000196715|Q8N0U8-2|VKORC1L1	nc|ENSG00000196715|Q8N0U8-2|VKORC1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2502746582031	2	471.251226	940.487899	0.59573	0.00028074	-2.6703	-0.0012584	-2.0746	-0.00097763	471.24971416407294	38.242	0.14264	38.242	38.139	38.282	0					9	5	2	0	0	0	0.6282	1	14983	14983		44.531	2.1349	1	89468			9089	11710	5368	5397	9250	9250					0.015274536773631553
EGVLMIILY	9	Unmodified	_EGVLMIILY_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8-3|UBR2	REV__nc|ENSG00000024048|Q8IWV8-3|UBR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.80126953125	2	525.798829	1049.5831	0.64695	0.00034017	4.1073	0.0021596	4.7542	0.0024998	525.8009227850664	30.163	0.17566	30.163	30.084	30.259	0					10	6	2	0	0	0	0.30268	1	9563	9563		50.025	9.4519	1	97434	+		9090	12950	5369	5398	9251	9251					0.06029626033569002
EGVLMIILY	9	Unmodified	_EGVLMIILY_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8-3|UBR2	REV__nc|ENSG00000024048|Q8IWV8-3|UBR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8010864257812	2	525.798829	1049.5831	1.6275	0.00085572	3.0747	0.0016167	4.7022	0.0024724	525.8001501113998	30.385	0.40285	30.385	30.277	30.68	0					15	8	3	0	0	0	0.30268	1	11256	11256		50.025	2.1089	1	336450	+		9091	12950	5369	5398	9252	9252					0.06029626033569002
EGVNRILL	8	Unmodified	_EGVNRILL_					0	0	0		ENST00000401813.7_1_1:2130482-2130731:-|nuORF	ENST00000401813.7_1_1:2130482-2130731:-|nuORF	ENST00000401813.7_1_1:2130482-2130731:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2767028808594	2	457.276909	912.539266	-1.0274	-0.00046982	0.66096	0.00030224	-0.36646	-0.00016758	457.27724065995494	38.53	0.39434	38.53	38.413	38.808	0					63	21	4	0	0	0	0.63077	1	13071	13071		44.117	3.3386	1	905910			9092	9255	5370	5399	9253	9253					0.07949777651424483
EGVNRILL	8	Unmodified	_EGVNRILL_					0	0	0		ENST00000401813.7_1_1:2130482-2130731:-|nuORF	ENST00000401813.7_1_1:2130482-2130731:-|nuORF	ENST00000401813.7_1_1:2130482-2130731:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2760925292969	2	457.276909	912.539266	0.21786	9.9621E-05	-0.66207	-0.00030275	-0.44422	-0.00020313	457.2766264742505	38.506	0.44417	38.506	38.378	38.823	0					51	22	4	0	0	0	0.73426	1	13867	13867		29.15	2.3535	1	881950			9093	9255	5370	5399	9254	9254					0.07949777651424483
EGVPGPIGRLG	11	Unmodified	_EGVPGPIGRLG_					0	0	0			REV__ENSG00000130635|ENST00000371817|COL5A1;REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.20123291015625	3	351.201341	1050.58219	-0.83163	-0.00029207	0.45793	0.00016082	-0.37371	-0.00013125	351.2015522913835	22.508	0.13729	22.508	22.435	22.572	0					8	4	2	0	0	0	0.77007	1	6642	6642		18.531	18.531	1	227800	+		9094	13294;14586	5371	5400	9255	9255					0.058925477088678235
EGVQPHPVAL	10	Unmodified	_EGVQPHPVAL_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7835083007812	2	523.785099	1045.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.946	1	12.946	12.446	13.446	0								0	0	0	0.38322	1	3037	3037		35.618	1.4457	1		+		9095	14054	5372	5401	9256	9256					0.03468858817495857
EGVRCEDMD	9	Unmodified	_EGVRCEDMD_					0	0	0			REV__NOTCH3|p.V159M|1|0.26|ENSG00000074181|chr19:15192164-15192164|C/T|missense_variant	REV__NOTCH3|p.V159M|1|0.26|ENSG00000074181|chr19:15192164-15192164|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2039184570312	2	527.202424	1052.39029	0.10378	5.4713E-05	2.6119	0.001377	2.7157	0.0014317	527.204171093991	18.469	0.23392	18.469	18.326	18.559	0					8	5	3	0	0	0	0.59802	1	5420	5420		21.96	0	1	339550	+		9096	21298	5373	5402	9257	9257					-0.1338048409595558
EGVSESTFMF	10	Unmodified	_EGVSESTFMF_					0	0	0			REV__ENSG00000151224|ENST00000372213|MAT1A	REV__ENSG00000151224|ENST00000372213|MAT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.2440185546875	2	567.244615	1132.47468	0.19429	0.00011021	-0.1384	-7.8509E-05	0.055885	3.1701E-05	567.2434982436218	12.147	0.15814	12.147	12.026	12.184	0					13	4	4	0	0	0	0.7005	1	2503	2503		21.96	0	1	366600	+		9097	15467	5374	5403	9258	9258					-0.08626210007560076
EGVSHLLV	8	Unmodified	_EGVSHLLV_					0	0	0			REV__ENST00000308595.9_1_11:67053337-67053520:+|nuORF	REV__ENST00000308595.9_1_11:67053337-67053520:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.2425842285156	2	427.242535	852.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.479	1	34.479	33.979	34.979	0								0	0	0	1.7419	1	13220	13220		40.573	0	1		+		9098	18257	5375	5404	9259	9259					0.038381133517077615
EGWFRIAE	8	Unmodified	_EGWFRIAE_					0	0	0		FKTN|p.F369Sfs*37|2|0.32|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN	FKTN|p.F369Sfs*37|2|0.32|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	FKTN|p.F369Sfs*37|2|0.32|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2514953613281	2	504.250892	1006.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.167	1	12.167	11.667	12.667	0								0	0	0	1.7419	1	2504	2504		23.042	1.3402	1				9099	2455	5376	5405	9260	9260					-0.01575385762339465
EGWLSLPL	8	Unmodified	_EGWLSLPL_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7505798339844	2	457.752736	913.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.34	1	23.34	22.84	23.84	0								0	0	0	1.7419	1	7107	7107		33.516	3.0119	1		+		9100	12522	5377	5406	9261	9261					0.030712840115256768
EGYQGSSIA	9	Unmodified	_EGYQGSSIA_					0	0	0			REV__ENSG00000007545|ENST00000397412|CRAMP1	REV__ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.2083435058594	2	456.208889	910.403226	-1.0777	-0.00049166	-0.1654	-7.5456E-05	-1.2431	-0.00056712	456.2088843635569	25.287	0.19109	25.287	25.189	25.38	0					9	6	2	0	0	0	0.24095	1	7852	7852		56.721	7.2795	1	99032	+		9101	12873	5378	5407	9262	9262					-0.0555596164989538
EGYQNQGQG	9	Unmodified	_EGYQNQGQG_					0	0	0		ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7068176269531	2	490.707045	979.399537	0.59206	0.00029053	-1.412	-0.00069286	-0.8199	-0.00040233	490.7064833717392	18.976	0.41394	18.976	18.867	19.281	0					13	8	3	0	0	0	0.43426	1	5931	5931		38.806	6.8513	1	1390100			9102	7835	5379	5408	9263	9263					-0.09098631423739789
EGYTCDCFEG	10	Unmodified	_EGYTCDCFEG_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.12835693359375	3	375.128414	1122.36341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.869	1	49.869	49.369	50.369	0								0	0	0	0.4201	1	19708	19708		16.717	0.71061	1				9103	3127	5380	5409	9264	9264					-0.19287592707132717
EGYVSDAEKK	10	Unmodified	_EGYVSDAEKK_					0	0	0			REV__nc|ENSG00000159140|P18583-2|SON	REV__nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.2763061523438	2	563.274761	1124.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.155	1	26.155	25.655	26.655	0								0	0	0	0.4044	1	8381	8381		29.17	1.2878	1		+		9104	15702	5381	5410	9265	9265					-0.022317763528235446
EGYYKRIL	8	Unmodified	_EGYYKRIL_					0	0	0			REV__ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant	REV__ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2901000976562	2	521.290017	1040.56548	-1.3301	-0.00069336	1.9787	0.0010315	0.64861	0.00033811	521.2909055428081	40.81	0.20488	40.81	40.735	40.94	0					11	6	2	0	0	0	0.65276	1	14474	14474		40.573	3.4135	1	243280	+		9105	12167	5382	5411	9266	9266					0.0468204682290434
EHAAVKNDT	9	Unmodified	_EHAAVKNDT_					0	0	0		UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant;nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;UNC79|p.M1332Cfs*31|1|0.31|ENSG00000133958|chr14:93613031-93613031|A/-|frameshift_variant;UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant;UNC79|p.K1620Nfs*23|1|0.44|ENSG00000133958|chr14:93622089-93622089|A/-|frameshift_variant;UNC79|p.E1772Rfs*6|1|0.14|ENSG00000133958|chr14:93622543-93622543|G/-|frameshift_variant;UNC79|p.H1937Pfs*2|1|0.36|ENSG00000133958|chr14:93634607-93634608|-/C|frameshift_variant	UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant	UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.74261474609375	2	492.740888	983.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.485	1	47.485	46.985	47.985	0								0	0	0	0.20989	1	17415	17415		49.536	11.725	1				9106	3881	5383	5412	9267	9267					-0.025171814929535685
EHAKPFRE	8	Unmodified	_EHAKPFRE_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2618408203125	2	507.261791	1012.50903	0.1632	8.2786E-05	-0.083851	-4.2535E-05	0.079351	4.0252E-05	507.2616379864372	25.265	0.51346	25.265	25.106	25.62	0					25	10	3	0	0	0	0.41701	1	8931	8931		68.787	2.3575	1	695530	+		9107	20946	5384	5413	9268	9268					0.0032741898622816734
EHAKPFRE	8	Unmodified	_EHAKPFRE_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2616271972656	2	507.261791	1012.50903	-0.17365	-8.8086E-05	0.32089	0.00016278	0.14724	7.4692E-05	507.26181412482725	25.17	0.77045	25.17	24.914	25.684	0					29	15	4	0	0	0	0.3961	1	8788	8788		71.296	14.575	1	1219700	+		9108	20946	5384	5413	9269	9269					0.0032741898622816734
EHAREQEQQ	9	Unmodified	_EHAREQEQQ_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;TPCN1|p.R792Q|1|0.16|ENSG00000186815|chr12:113296000-113296000|G/A|missense_variant;ENST00000551127.5_1_12:113730719-113733878:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	577.7633056640625	2	577.762883	1153.51121	-1.6266	-0.00093978	1.5883	0.00091767	-0.03827	-2.2111E-05	577.7638201203032	26.196	0.61913	26.196	25.67	26.289	0					18	12	2	0	0	0	0.46194	1	8408	8408		36.447	2.2742	1	155650			9109	7162	5385	5414	9270	9270					-0.05940197066615838
EHEYNTRF	8	Unmodified	_EHEYNTRF_					0	0	0			REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF	REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2492065429688	2	548.246338	1094.47812	4.683	0.0025675	0.4069	0.00022308	5.0899	0.0027905	548.2466433140307	20.786	0.32267	20.786	20.699	21.022	0					19	10	3	0	0	0	0.61938	1	5850	5850		45.952	45.952	1	213940	+		9110	19022	5386	5415	9271	9271					-0.065337791186721
EHFPLTLE	8	Unmodified	_EHFPLTLE_					0	0	0		nc|ENSG00000282499|A0A075B6N4|TRBV25-1	nc|ENSG00000282499|A0A075B6N4|TRBV25-1	nc|ENSG00000282499|A0A075B6N4|TRBV25-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2537536621094	2	493.2531	984.491647	2.7638	0.0013632	-1.8628	-0.00091881	0.90099	0.00044442	493.25211492117273	11.903	0.72963	11.903	11.797	12.526	0					38	21	3	0	0	0	0.79882	1	2554	2554		19.36	2.8868	1	6669000			9111	11813	5387	5416	9272	9272					-0.001219213394392682
EHGIIKEC	8	Unmodified	_EHGIIKEC_					0	0	0		nc|ENSG00000026103|P25445-7|FAS;FAS|p.A301Sfs*20|1|0.36|ENSG00000026103|chr10:89014336-89014337|-/A|frameshift_variant;ENSG00000026103|ENST00000652046|FAS;ENST00000371857.7_1_10:90751224-90770455:+|nuORF;nc|ENSG00000026103|P25445-6|FAS	nc|ENSG00000026103|P25445-7|FAS	nc|ENSG00000026103|P25445-7|FAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.23284912109375	2	464.731477	927.448402	0.686	0.00031881	3.9201	0.0018218	4.6061	0.0021406	464.7340654947416	41.713	0.69804	41.713	41.363	42.061	0					35	29	2	0	0	0	0.63077	1	16478	16478		44.117	3.5442	1	259990			9112	1133	5388	5417	9273	9273					-0.01822434388361671
EHHGKKLQI	9	Unmodified	_EHHGKKLQI_					0	0	0		TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3170166015625	2	545.311815	1088.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.129	1	50.129	49.629	50.629	0								0	0	0	0.3368	1	19801	19801		27.882	2.3082	1				9113	23060	5389	5418	9274	9274					0.06831656320036927
EHHQSGETAP	10	Unmodified	_EHHQSGETAP_					0	0	0			REV__ENST00000231061.8_1_5:151054218-151066527:-|nuORF	REV__ENST00000231061.8_1_5:151054218-151066527:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7407836914062	2	546.738877	1091.4632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.242	1	22.242	21.742	22.742	0								0	0	0	0.4201	1	6257	6257		21.686	0.73882	1		+		9114	17915	5390	5419	9275	9275					-0.07887270986657313
EHHSDLLL	8	Unmodified	_EHHSDLLL_					0	0	0			REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.24957275390625	2	482.248349	962.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.085	1	33.085	32.585	33.585	0								0	0	0	1.7419	1	11081	11081		35.201	1.6851	1		+		9115	20475	5391	5420	9276	9276					-0.000596896249362544
EHIAIEGIM	9	Unmodified	_EHIAIEGIM_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7599182128906	2	506.760235	1011.50592	1.0974	0.00055613	-0.86534	-0.00043852	0.23209	0.00011761	506.760169152812	34.379	0.4324	34.379	34.303	34.735	0					15	11	2	0	0	0	0.23186	1	13258	13258		57.811	2.3071	1	208240			9116	1636	5392	5421	9277	9277					0.0006240781721089661
EHIAYLQSL	9	Unmodified	_EHIAYLQSL_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.28564453125	2	537.284931	1072.55531	1.9727	0.0010599	0.7625	0.00040968	2.7352	0.0014696	537.2853108334208	27.501	0.52413	27.501	27.289	27.813	0					15	10	3	0	0	0	0.24095	1	9864	9864		56.721	1.9447	1	499600			9117	7167	5393	5422	9278	9278					0.021934390976639406
EHKGELQTDK	10	Unmodified	_EHKGELQTDK_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1;ENST00000518204.1_1_5:167894814-167896019:+|nuORF;ENST00000521391.1_1_5:167891940-167899269:+|nuORF	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.801513671875	2	592.798934	1183.58332	3.1755	0.0018825	0.51021	0.00030245	3.6858	0.0021849	592.7991659389396	36.056	0.31867	36.056	35.898	36.217	0					11	6	2	0	0	0	0.44601	1	14012	14012		51.193	8.3284	1	2602300			9118	2817	5394	5423	9279	9279					-0.0011328271291404235
EHKNRMSQ	8	Unmodified	_EHKNRMSQ_					0	0	0		EIF3A|p.R752Q|1|0.12|ENSG00000107581|chr10:119051263-119051263|C/T|missense_variant	EIF3A|p.R752Q|1|0.12|ENSG00000107581|chr10:119051263-119051263|C/T|missense_variant	EIF3A|p.R752Q|1|0.12|ENSG00000107581|chr10:119051263-119051263|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2499389648438	2	515.248357	1028.48216	0.78357	0.00040373	1.6169	0.00083311	2.4005	0.0012368	515.2493697345158	28.963	0.30046	28.963	28.829	29.129	0					11	6	3	0	0	0	0.46013	1	10668	10668		64.207	21.343	1	280580			9119	898	5395	5424	9280	9280					-0.030940128965994518
EHLDLLSQ	8	Unmodified	_EHLDLLSQ_					0	0	0		CES5A|p.P323H|1|0.37|ENSG00000159398|chr16:55859635-55859635|G/T|missense_variant	CES5A|p.P323H|1|0.37|ENSG00000159398|chr16:55859635-55859635|G/T|missense_variant	CES5A|p.P323H|1|0.37|ENSG00000159398|chr16:55859635-55859635|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.7481384277344	2	477.748182	953.481811	-1.4776	-0.00070594	1.2222	0.00058391	-0.25541	-0.00012202	477.74887924668	24.559	0.15662	24.559	24.468	24.624	0					8	5	2	0	0	0	0.70598	1	7543	7543		32.812	0	1	82378			9120	492	5396	5425	9281	9281					0.0032089065520040094
EHLDPFLQTT	10	Unmodified	_EHLDPFLQTT_					0	0	0			REV__ENST00000330714.7_1_21:42780219-42780591:+|nuORF	REV__ENST00000330714.7_1_21:42780219-42780591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	600.7981567382812	2	600.798403	1199.58225	0.14184	8.5215E-05	-0.24829	-0.00014917	-0.10646	-6.3958E-05	600.7979581217644	25.414	0.1454	25.414	25.326	25.471	0					9	6	2	0	0	0	0.62149	1	7640	7640		19.997	0	1	69133	+		9121	18379	5397	5426	9282	9282					-0.009554970818271613
EHLERLAL	8	Unmodified	_EHLERLAL_					0	0	0		ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.52215576171875	3	327.522303	979.545079	0.55157	0.00018065	-0.74677	-0.00024458	-0.1952	-6.3931E-05	327.52209722651435	20.653	0.31639	20.653	20.396	20.713	0					9	6	2	0	0	0	0.70055	1	6739	6739		44.117	1.7207	1	212910			9122	8032	5398	5427	9283	9283					0.05448876163063687
EHLGETAMI	9	Oxidation (M)	_EHLGETAM(Oxidation (M))I_		EHLGETAM(1)I		EHLGETAM(48)I	0	0	1			REV__ENST00000560075.1_1_15:52439654-52476873:-|nuORF	REV__ENST00000560075.1_1_15:52439654-52476873:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2884521484375	2	508.739499	1015.46445	-0.54178	-0.00027562	-0.92772	-0.00047197	-1.4695	-0.00074759	509.2406556353455	28.552	0.39844	28.552	28.377	28.775	0					23	15	2	0	0	0	0.32741	1	9243	9243		47.916	14.4	1	92725	+		9123	13164	5399	5428	9284	9284		510			-0.0426677294210549
EHLKLYYI	8	Unmodified	_EHLKLYYI_					0	0	0			REV__ENSG00000205085|ENST00000682356|GARIN1A	REV__ENSG00000205085|ENST00000682356|GARIN1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.8058471679688	2	539.800217	1077.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.709	1	27.709	27.209	28.209	0								0	0	0	1.7419	1	8861	8861		42.474	3.2216	1		+		9124	17513	5400	5429	9285	9285					0.05019217482708882
EHLLKDNK	8	Unmodified	_EHLLKDNK_					0	0	0		tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.77081298828125	2	498.777274	995.539994	-0.73743	-0.00036781	-1.5023	-0.00074933	-2.2398	-0.0011171	498.77648162409076	28.469	0.51739	28.469	28.359	28.877	0					22	10	3	0	0	0	0.59773	1	10283	10283		49.442	0	1	1546100			9125	22872	5401	5430	9286	9286					0.04204572300466225
EHLVWQILAN	10	Unmodified	_EHLVWQILAN_					0	0	0		ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant;ENSG00000078295|ENST00000338316|ADCY2	ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant	ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	408.222412109375	3	408.224146	1221.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.198	1	15.198	14.698	15.698	0								0	0	0	0.4044	1	3260	3260		29.17	5.6474	1				9126	67	5402	5431	9287	9287					0.048647922887312234
EHMKTHAGAL	10	Unmodified	_EHMKTHAGAL_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.7728881835938	2	547.774208	1093.53386	-1.506	-0.00082492	-0.67283	-0.00036856	-2.1788	-0.0011935	547.7736858507593	24.299	0.2605	24.299	24.206	24.467	0					14	6	3	0	0	0	0.44292	1	7558	7558		39.253	15.05	1	426750			9127	7791	5403	5432	9288	9288					-0.009162692027075536
EHMNHKLV	8	Unmodified	_EHMNHKLV_					0	0	0		APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2594909667969	2	504.258194	1006.50183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.727	1	11.727	11.227	12.227	0								0	0	0	1.7419	1	2474	2474		12.207	0	1				9128	186	5404	5433	9289	9289					-0.001156368858460155
EHMRAVDK	8	Oxidation (M)	_EHM(Oxidation (M))RAVDK_		EHM(1)RAVDK		EHM(51)RAVDK	0	0	1			REV__SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	REV__SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.24560546875	2	501.245283	1000.47601	-0.11266	-5.6469E-05	0.80027	0.00040113	0.68761	0.00034466	501.2456207580111	13.075	0.1947	13.075	12.994	13.189	0					13	5	4	0	0	0	0.58597	1	2886	2886		51.335	12.529	1	3046100	+		9129	21598	5405	5434	9290	9290		783			-0.024205311281207287
EHPETRAAVA	10	Unmodified	_EHPETRAAVA_					0	0	0		ENST00000296861.2_1_6:47277360-47277606:-|nuORF	ENST00000296861.2_1_6:47277360-47277606:-|nuORF	ENST00000296861.2_1_6:47277360-47277606:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7760009765625	2	540.775262	1079.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.37	1	16.37	15.87	16.87	0								0	0	0	0.35368	1	3868	3868		42.396	4.5846	1				9130	8464	5406	5435	9291	9291					-0.000615171932395242
EHPKKQKIT	9	Unmodified	_EHPKKQKIT_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.8271484375	2	554.827298	1107.64004	1.3099	0.00072676	-0.7225	-0.00040086	0.58738	0.00032589	554.8272294365828	27.258	0.18077	27.258	27.171	27.352	0					11	7	2	0	0	0	0.44593	1	8402	8402		37.812	5.061	1	30824			9131	2435	5407	5436	9292	9292					0.09052809634272307
EHPRLRRPM	9	Unmodified	_EHPRLRRPM_					0	0	0		ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;PCDHAC2|p.Y622Lfs*8|1|0.23|ENSG00000243232|chr5:140968624-140968625|-/T|frameshift_variant	ENSG00000243232|ENST00000289269|PCDHAC2	ENSG00000243232|ENST00000289269|PCDHAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.327392578125	2	596.330016	1190.64548	-1.8259	-0.0010889	-1.9618	-0.0011699	-3.7878	-0.0022588	596.3290246042918	35.359	0.28867	35.359	35.18	35.469	0					15	10	2	0	0	0	0.53083	1	12579	12579		29.15	3.5755	1	55753			9132	7952	5408	5437	9293	9293					0.0577820994508329
EHQERQEVE	9	Unmodified	_EHQERQEVE_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant;UBN2|p.K315Efs*5|1|0.25|ENSG00000157741|chr7:139261280-139261281|-/A|frameshift_variant;UBN2|p.K314Rfs*11|1|0.15|ENSG00000157741|chr7:139261281-139261281|A/-|frameshift_variant;UBN2|p.K542Nfs*2|1|0.14|ENSG00000157741|chr7:139272347-139272347|A/-|frameshift_variant;UBN2|p.L543Tfs*6|1|0.38|ENSG00000157741|chr7:139272346-139272347|-/A|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.1846618652344	3	395.182786	1182.52653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.119	1	49.119	48.619	49.619	0								0	0	0	0.3245	1	18502	18502		30.318	5.7985	1				9133	5229	5409	5438	9294	9294					-0.057433302694107624
EHQLGLPLY	9	Unmodified	_EHQLGLPLY_					0	0	0		CTC1|p.R460H|1|0.39|ENSG00000178971|chr17:8235113-8235113|C/T|missense_variant	CTC1|p.R460H|1|0.39|ENSG00000178971|chr17:8235113-8235113|C/T|missense_variant	CTC1|p.R460H|1|0.39|ENSG00000178971|chr17:8235113-8235113|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7889404296875	2	535.287474	1068.5604	0.17708	9.4791E-05	0.1461	7.8203E-05	0.32318	0.00017299	535.2876176659045	41.185	0.35862	41.185	41.052	41.41	0					42	17	3	0	0	0	0.4966	1	15631	15631		32.812	2.3088	1	541030			9134	705	5410	5439	9295	9295					0.028857429603021956
EHRRFYEERRK	11	Unmodified	_EHRRFYEERRK_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.951904296875	3	535.950078	1604.82841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.665	1	40.665	40.165	41.165	0								0	0	0	0.45674	1	14431	14431		8.0344	1.7135	1				9135	22640	5411	5440	9296	9296					0.05018435540591781
EHSARYQY	8	Unmodified	_EHSARYQY_					0	0	0		PTPRF|p.R1757H|1|0.37|ENSG00000142949|chr1:43620485-43620485|G/A|missense_variant	PTPRF|p.R1757H|1|0.37|ENSG00000142949|chr1:43620485-43620485|G/A|missense_variant	PTPRF|p.R1757H|1|0.37|ENSG00000142949|chr1:43620485-43620485|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2403564453125	2	527.241055	1052.46756	1.733	0.0009137	-3.2703	-0.0017242	-1.5373	-0.00081052	527.2391699063672	32.736	0.32069	32.736	32.669	32.99	0					12	8	3	0	0	0	0.59411	1	11427	11427		50.025	5.4935	1	51384			9136	11986	5412	5441	9297	9297					-0.05657761773113634
EHSFLPSSY	9	Unmodified	_EHSFLPSSY_					0	0	0		nc|ENSG00000019991|P14210-6|HGF;nc|ENSG00000019991|P14210-2|HGF;nc|ENSG00000019991|P14210-4|HGF;ENSG00000019991|ENST00000222390|HGF	nc|ENSG00000019991|P14210-6|HGF	nc|ENSG00000019991|P14210-6|HGF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7454833984375	2	533.745639	1065.47673	1.0962	0.00058507	0.46903	0.00025034	1.5652	0.00083542	533.7459043659293	32.625	0.4138	32.625	32.375	32.788	0					24	17	2	0	0	0	0.35045	1	10548	10548		45.952	5.1738	1	67470			9137	1098	5413	5442	9298	9298					-0.053394132074117806
EHTDRSINT	9	Unmodified	_EHTDRSINT_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7542724609375	2	536.754527	1071.4945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.36	1	18.36	17.86	18.86	0								0	0	0	0.2591	1	5621	5621		42.396	10.762	1		+		9138	17188	5414	5443	9299	9299					-0.03838697952551229
EHTSSLDVR	9	Unmodified	_EHTSSLDVR_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2572021484375	2	522.259445	1042.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.815	1	15.815	15.315	16.315	0								0	0	0	0.3304	1	3506	3506		29.15	3.5755	1		+		9139	13592	5415	5444	9300	9300					-0.015215099471788562
EHVNTVGYGK	10	Unmodified	_EHVNTVGYGK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.27978515625	2	552.277638	1102.54072	3.6736	0.0020289	0.74078	0.00040912	4.4144	0.002438	552.2780157381866	41.728	0.22606	41.728	41.622	41.848	0					20	6	4	0	0	0	0.32758	1	16596	16596		64.207	2.0999	1	1304600			9140	6530	5416	5445	9301	9301					-0.0064463305047866015
EHVYLRQN	8	Unmodified	_EHVYLRQN_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7740478515625	2	529.772522	1057.53049	2.3327	0.0012358	0.68419	0.00036246	3.0169	0.0015983	529.7729417289079	14.826	0.14069	14.826	14.734	14.875	0					9	3	3	0	0	0	0.6282	1	3712	3712		44.531	9.3304	1	245300	+		9141	16727	5417	5446	9302	9302					0.004028040149478329
EHWIIVVCD	9	Unmodified	_EHWIIVVCD_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.272705078125	2	557.273509	1112.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.301	1	37.301	36.801	37.801	0								0	0	0	0.28996	1	14584	14584		37.159	4.3467	1		+		9142	12991	5418	5447	9303	9303					-0.019299032914432246
EHYFLGISK	9	Unmodified	_EHYFLGISK_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.8170776367188	2	547.287474	1092.5604	0.53566	0.00029316	0.56229	0.00030773	1.098	0.0006009	547.287701652313	12.591	0.13436	12.591	12.542	12.676	0					5	3	2	0	0	0	0.54267	1	2743	2743		27.882	3.3631	1	311710			9143	2918	5419	5448	9304	9304					0.01781742960270094
EHYSRLIA	8	Unmodified	_EHYSRLIA_					0	0	0			REV__RAD9A|p.V176A|1|0.11|ENSG00000172613|chr11:67395793-67395793|T/C|missense_variant	REV__RAD9A|p.V176A|1|0.11|ENSG00000172613|chr11:67395793-67395793|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7658996582031	2	494.764166	987.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.106	1	40.106	39.606	40.606	0								0	0	0	1.7419	1	15797	15797		33.516	0.70317	1		+		9144	21441	5420	5449	9305	9305					0.01952303128996391
EIAESDQSY	9	Unmodified	_EIAESDQSY_					0	0	0			REV__MYOM1|p.P866Rfs*31|1|0.35|ENSG00000101605|chr18:3129429-3129429|G/-|frameshift_variant	REV__MYOM1|p.P866Rfs*31|1|0.35|ENSG00000101605|chr18:3129429-3129429|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7227783203125	2	521.222194	1040.42983	0.33314	0.00017364	-2.9401	-0.0015324	-2.607	-0.0013588	521.2209902715857	19.242	0.20514	19.242	19.117	19.322	0					12	6	3	0	0	0	0.48389	1	5172	5172		34.173	6.2903	1	75559	+		9145	13609	5421	5450	9306	9306					-0.08876317549220403
EIAGYSRLL	9	Unmodified	_EIAGYSRLL_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.28717041015625	2	511.287474	1020.5604	-0.12863	-6.5769E-05	0.10358	5.2958E-05	-0.025055	-1.281E-05	511.2875494738891	33.656	0.25317	33.656	33.555	33.808	0					23	10	3	0	0	0	0.46194	1	10944	10944		36.447	0.82846	1	304060	+		9146	15280	5422	5451	9307	9307					0.050937429602981865
EIAREKVQF	9	Unmodified	_EIAREKVQF_					0	0	0		tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8077392578125	2	560.31148	1118.60841	1.8003	0.0010087	-3.7263	-0.0020879	-1.926	-0.0010792	560.3107350426025	39.839	0.46818	39.839	39.65	40.118	0					30	16	3	0	0	0	0.44593	1	15642	15642		37.812	11.015	1	239490			9147	23000	5423	5452	9308	9308					0.053848168803369845
EICWNLQNI	9	Unmodified	_EICWNLQNI_					0	0	0		SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;ENST00000466432.1_1_7:100483345-100483628:+|nuORF	SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.7784423828125	2	566.776416	1131.53828	3.4715	0.0019675	0.26586	0.00015068	3.7373	0.0021182	566.7765354934967	40.232	0.66872	40.232	39.987	40.656	0					40	15	4	0	0	0	0.37197	1	15901	15901		44.117	1.7207	1	323210			9148	1758	5424	5453	9309	9309					-0.022228047797852923
EIDEENKPQ	9	Unmodified	_EIDEENKPQ_					0	0	0			REV__ENSG00000156738|ENST00000345732|MS4A1	REV__ENSG00000156738|ENST00000345732|MS4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2568359375	2	551.256568	1100.49858	1.645	0.00090681	-0.89806	-0.00049506	0.74693	0.00041175	551.2561054651195	24.602	0.21782	24.602	24.494	24.712	0					14	4	4	0	0	0	0.13267	1	8640	8640		71.877	3.0906	1	763890	+		9149	15639	5425	5454	9310	9310					-0.04764653249526418
EIDGAVKEVL	10	Unmodified	_EIDGAVKEVL_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7978515625	2	536.797872	1071.58119	0.70199	0.00037683	-0.30787	-0.00016527	0.39412	0.00021156	536.7976258141637	33.708	0.12756	33.708	33.652	33.779	0					7	5	2	0	0	0	0.20322	1	10988	10988		66.962	0	1	97837	+		9150	12872	5426	5455	9311	9311					0.04826288549293167
EIDHHREQYE	10	Unmodified	_EIDHHREQYE_					0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57;CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	678.30029296875	2	678.302372	1354.59019	-3.5233	-0.0023899	0.32332	0.00021931	-3.2	-0.0021705	678.3025806950468	18.068	0.35746	18.068	17.817	18.175	0					19	7	3	0	0	0	0.39566	1	5344	5344		56.721	3.7844	1	2126500			9151	6593	5427	5456	9312	9312					-0.07291969832340328
EIDKKTFL	8	Unmodified	_EIDKKTFL_					0	0	0		tr|U7SUH3|U7SUH3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01420PE=4SV=1	tr|U7SUH3|U7SUH3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01420PE=4SV=1	tr|U7SUH3|U7SUH3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01420PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.28436279296875	2	497.2844	992.554247	0.70922	0.00035268	-0.91738	-0.0004562	-0.20816	-0.00010352	497.2836465903598	33.461	0.25296	33.461	33.339	33.592	0					10	6	3	0	0	0	0.61938	1	12387	12387		45.952	1.4209	1	139910			9152	22824	5428	5457	9313	9313					0.05767224728754172
EIDMWLWWYRE	11	Unmodified	_EIDMWLWWYRE_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.91748046875	3	542.918505	1625.73368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.092	1	25.092	24.592	25.592	0								0	0	0	0.45674	1	8529	8529		5.6988	2.0797	1		+		9153	14666	5429	5458	9314	9314					-0.05415259045594212
EIDNIKNQV	9	Unmodified	_EIDNIKNQV_					0	0	0		ENST00000551130.1_1_12:52635330-52637101:+|nuORF	ENST00000551130.1_1_12:52635330-52637101:+|nuORF	ENST00000551130.1_1_12:52635330-52637101:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7857666015625	2	536.785296	1071.55604	2.1242	0.0011402	-1.4239	-0.00076432	0.70033	0.00037592	536.7845921879139	25.953	0.55369	25.953	25.664	26.218	0					26	11	4	0	0	0	0.026538	1	8905	8905		112.41	5.7279	1	1005900			9154	10622	5430	5459	9315	9315					0.02312233746692982
EIEAGFEAGI	10	Unmodified	_EIEAGFEAGI_					0	0	0			REV__WDR7|p.L1146Hfs*7|1|0.04|ENSG00000091157|chr18:56880075-56880076|-/ATAGAATCTCAACT|frameshift_variant	REV__WDR7|p.L1146Hfs*7|1|0.04|ENSG00000091157|chr18:56880075-56880076|-/ATAGAATCTCAACT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2536010742188	2	518.253297	1034.49204	0.94618	0.00049036	0.26968	0.00013976	1.2159	0.00063012	518.2533236153865	24.693	0.23299	24.693	24.594	24.827	0					9	5	3	0	0	0	0.39566	1	7751	7751		56.721	3.3696	1	103160	+		9155	13441	5431	5460	9316	9316					-0.023825464102401384
EIEALIHR	8	Unmodified	_EIEALIHR_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.5222473144531	3	327.522303	979.545079	0.55157	0.00018065	-0.61514	-0.00020147	-0.063578	-2.0823E-05	327.52208211907225	24.335	0.26385	24.335	24.23	24.494	0					9	5	2	0	0	0	0.70055	1	8515	8515		27.882	11.875	1	803430			9156	4676	5432	5461	9317	9317					0.05448876163097793
EIEGRRLTL	9	Unmodified	_EIEGRRLTL_					0	0	0			REV__ENSG00000106665|ENST00000223398|CLIP2	REV__ENSG00000106665|ENST00000223398|CLIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8182373046875	2	543.81693	1085.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.085	1	11.085	10.585	11.585	0								0	0	0	0.35071	1	2190	2190		18.262	1.5447	1		+		9157	13833	5433	5462	9318	9318					0.07992219254606425
EIEIIPCSR	9	Unmodified	_EIEIIPCSR_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2797241210938	2	530.278792	1058.54303	1.2065	0.00063978	0.3723	0.00019742	1.5788	0.0008372	530.2788824977572	28.214	0.31301	28.214	28.103	28.416	0					12	7	2	0	0	0	0.33044	1	9344	9344		47.657	3.2801	1	69853			9158	4090	5434	5463	9319	9319					0.016100793629675536
EIEKGNKDKS	10	Unmodified	_EIEKGNKDKS_					0	0	0			REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1	REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.302001953125	2	574.30131	1146.58807	1.1626	0.00066768	-0.74075	-0.00042541	0.42185	0.00024227	574.30088114339	14.963	0.11631	14.963	14.917	15.033	0					9	5	2	0	0	0	0.68774	1	3258	3258		23.523	0.48021	1	58823	+		9159	21693	5435	5464	9320	9320					0.020636014298588634
EIEQGDRGI	9	Unmodified	_EIEQGDRGI_					0	0	0			REV__ENST00000506175.1_1_4:69188417-69195784:-|nuORF	REV__ENST00000506175.1_1_4:69188417-69195784:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.75555419921875	2	508.753995	1015.49344	1.1525	0.00058632	3.1079	0.0015812	4.2604	0.0021675	508.7550644460201	38.97	0.09927	38.97	38.891	38.99	0					6	3	2	0	0	0	0.24334	1	15313	15313		56.434	3.3448	1	66830	+		9160	13340	5436	5465	9321	9321					-0.013689123214589927
EIEYRLMI	8	Unmodified	_EIEYRLMI_					0	0	0			REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7855834960938	2	533.78371	1065.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.299	1	20.299	19.799	20.799	0								0	0	0	1.7419	1	6425	6425		45.952	5.1738	1		+		9161	22041	5437	5466	9322	9322					0.022712673683372486
EIFESSDPM	9	Unmodified	_EIFESSDPM_					0	0	0			REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7251586914062	2	527.723515	1053.43248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.5	1	12.5	12	13	0								0	0	0	0.39567	1	2828	2828		12.207	1.3413	1		+		9162	19115	5438	5467	9323	9323					-0.09210185415918204
EIFIKATS	8	Unmodified	_EIFIKATS_					0	0	0			REV__ENST00000227520.9_1_11:60618398-60618482:+|nuORF	REV__ENST00000227520.9_1_11:60618398-60618482:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.7580261230469	2	454.758018	907.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.206	1	38.206	37.706	38.706	0								0	0	0	1.7419	1	13668	13668		37.159	5.2042	1		+		9163	17904	5439	5468	9324	9324					0.04403266665940464
EIFSRLMR	8	Unmodified	_EIFSRLMR_					0	0	0			REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.1961364746094	3	351.195421	1050.56443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.246	1	25.246	24.746	25.746	0								0	0	0	1.7419	1	8601	8601		11.511	1.8054	1		+		9164	14942	5440	5469	9325	9325					0.04117509182356116
EIGNEQHTHYQ	11	Unmodified	_EIGNEQHTHYQ_					0	0	0			REV__TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant	REV__TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	678.3001708984375	2	678.302372	1354.59019	-2.6864	-0.0018222	-0.58774	-0.00039867	-3.2741	-0.0022208	678.3019160414731	18.112	0.36547	18.112	17.855	18.221	0					19	8	4	0	0	0	0.63398	1	5239	5239		33.922	1.1711	1	1024500	+		9165	15904	5441	5470	9326	9326					-0.07291969832340328
EIGRKMSK	8	Unmodified	_EIGRKMSK_					0	0	0		tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7716979980469	2	474.768394	947.522236	2.3343	0.0011083	2.0455	0.00097112	4.3798	0.0020794	474.7702936710079	22.914	0.21329	22.914	22.855	23.069	0					10	4	4	0	0	0	0.59773	1	7731	7731		49.442	5.0644	1	499570			9166	22915	5442	5471	9327	9327					0.04637533773973246
EIGYWYGPA	9	Unmodified	_EIGYWYGPA_					0	0	0			REV__ENST00000493551.1_1_2:29383269-29390459:+|nuORF	REV__ENST00000493551.1_1_2:29383269-29390459:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.244873046875	2	528.245275	1054.476	0.10754	5.6808E-05	-0.26373	-0.00013931	-0.15619	-8.2504E-05	528.2453135737594	37.151	0.15913	37.151	37.059	37.219	0					6	4	2	0	0	0	0.21116	1	14082	14082		60.294	12.637	1	157260	+		9167	12513	5443	5472	9328	9328					-0.04906207856470246
EIHMRTHK	8	Unmodified	_EIHMRTHK_					0	0	0		ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.280029296875	2	526.276918	1050.53928	3.4574	0.0018196	1.7339	0.00091251	5.1913	0.0027321	526.277716243567	18.822	0.49052	18.822	18.589	19.079	0					14	10	2	0	0	0	0.68432	1	5720	5720		35.618	0.41757	1	646920			9168	23146	5444	5473	9329	9329					0.01603454379755931
EIHTESNL	8	Unmodified	_EIHTESNL_					0	0	0			REV__PASD1|p.F108C|1|0.7|ENSG00000166049|chrX:151621497-151621497|T/G|missense_variant	REV__PASD1|p.F108C|1|0.7|ENSG00000166049|chrX:151621497-151621497|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7295837402344	2	471.729989	941.445425	-0.014872	-7.0158E-06	-0.16819	-7.9339E-05	-0.18306	-8.6355E-05	471.7299055587276	33.763	0.25867	33.763	33.682	33.941	0					18	10	2	0	0	0	0.74405	1	11008	11008		27.882	0	1	73868	+		9169	16089	5445	5474	9330	9330					-0.027639862415185235
EIIDRTTG	8	Unmodified	_EIIDRTTG_					0	0	0			REV__tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	REV__tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.739990234375	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.993	1	20.993	20.493	21.493	0								0	0	0	1.7419	1	6006	6006		51.335	5.3835	1		+		9170	22044	5446	5475	9331	9331					0.010566041381594005
EIIFIGGGSII	11	Unmodified	_EIIFIGGGSII_					0	0	0		ENST00000371227.8_1_10:97074711-97074810:-|nuORF	ENST00000371227.8_1_10:97074711-97074810:-|nuORF	ENST00000371227.8_1_10:97074711-97074810:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.8246459960938	2	559.826432	1117.63831	1.2843	0.00071901	-4.3463	-0.0024332	-3.062	-0.0017142	559.8242956324233	25.652	0.13	25.652	25.578	25.708	0					6	4	2	0	0	0	0.56817	1	7742	7742		39.253	6.4404	1	46199			9171	8965	5447	5476	9332	9332					0.0841975582568466
EIIPSTSL	8	Unmodified	_EIIPSTSL_					0	0	0		nc|ENSG00000120903|Q15822-2|CHRNA2;ENSG00000120903|ENST00000407991|CHRNA2;nc|ENSG00000101204|P43681-2|CHRNA4;ENSG00000101204|ENST00000370263|CHRNA4	nc|ENSG00000120903|Q15822-2|CHRNA2	nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.242431640625	2	430.242201	858.469849	0.98749	0.00042486	0.074448	3.2031E-05	1.0619	0.00045689	430.2421734725525	35.424	0.37463	35.424	35.262	35.637	0					19	7	3	0	0	0	0.52345	1	13660	13660		57.811	5.5121	1	1094400			9172	3201	5448	5477	9333	9333					0.03495273912017183
EIKHSVIF	8	Unmodified	_EIKHSVIF_					0	0	0		tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7803955078125	2	486.779285	971.544017	-0.54681	-0.00026617	2.5677	0.0012499	2.0209	0.00098374	486.7807561248033	36.039	0.16992	36.039	35.979	36.149	0					5	3	2	0	0	0	0.66372	1	13983	13983		38.806	3.6054	1	56461			9173	22791	5449	5478	9334	9334					0.05710661794205407
EIKSKYLM	8	Unmodified	_EIKSKYLM_					0	0	0		tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.85601806640625	3	337.856294	1010.54705	0.53251	0.00017991	-2.2653	-0.00076535	-1.7328	-0.00058544	337.8555902743723	25.484	0.31141	25.484	25.375	25.687	0					13	6	3	0	0	0	0.68754	1	9059	9059		37.159	0	1	641580			9174	23030	5450	5479	9335	9335					0.04220168856681994
EIKTRRQQD	9	Unmodified	_EIKTRRQQD_					0	0	0		NGEF|p.E192K|1|0.39|ENSG00000066248|chr2:232920538-232920538|C/T|missense_variant	NGEF|p.E192K|1|0.39|ENSG00000066248|chr2:232920538-232920538|C/T|missense_variant	NGEF|p.E192K|1|0.39|ENSG00000066248|chr2:232920538-232920538|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.3192138671875	2	587.320368	1172.62618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.238	1	19.238	18.738	19.738	0								0	0	0	0.16453	1	5173	5173		32.812	0	1				9175	11854	5451	5480	9336	9336					0.04677532135178808
EILDRLKTE	9	Unmodified	_EILDRLKTE_					0	0	0		RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant	RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.88006591796875	3	372.880156	1115.61864	0.36173	0.00013488	-0.33136	-0.00012356	0.030373	1.1325E-05	372.8800321962129	21.212	0.39423	21.212	21.08	21.474	0					26	9	5	0	0	0	0.44593	1	6693	6693		45.022	14.453	1	9312200			9176	2245	5452	5481	9337	9337					0.06545379814906482
EILPSLHAK	9	Unmodified	_EILPSLHAK_					0	0	0		ENST00000355819.5_1_12:10205351-10215657:+|nuORF	ENST00000355819.5_1_12:10205351-10215657:+|nuORF	ENST00000355819.5_1_12:10205351-10215657:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2974853515625	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.928	1	49.928	49.428	50.428	0								0	0	0	0.27939	1	19731	19731		39.253	1.4413	1				9177	8803	5453	5482	9338	9338					0.0781033333993264
EILQTFPH	8	Unmodified	_EILQTFPH_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7591857910156	2	492.761092	983.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.499	1	14.499	13.999	14.999	0								0	0	0	1.7419	1	2991	2991		40.573	5.4206	1				9178	6121	5454	5483	9339	9339					0.015217848974771186
EILRVVIS	8	Unmodified	_EILRVVIS_					0	0	0		ENSG00000117592|ENST00000340385|PRDX6	ENSG00000117592|ENST00000340385|PRDX6	ENSG00000117592|ENST00000340385|PRDX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7945861816406	2	464.794935	927.575317	0.53669	0.00024945	-1.1233	-0.0005221	-0.58659	-0.00027264	464.79429300481803	22.73	0.25577	22.73	22.561	22.817	0					16	6	4	0	0	0	0.5676	1	7439	7439		53.351	7.3995	1	754130			9179	3045	5455	5484	9340	9340					0.1086323482828675
EIMASVLNGK	10	Unmodified	_EIMASVLNGK_					0	0	0		CDC25A|p.G469Dfs*7|1|0.3|ENSG00000164045|chr3:48159372-48159372|C/-|frameshift_variant;nc|ENSG00000164045|P30304-2|CDC25A;ENSG00000164045|ENST00000302506|CDC25A	CDC25A|p.G469Dfs*7|1|0.3|ENSG00000164045|chr3:48159372-48159372|C/-|frameshift_variant	CDC25A|p.G469Dfs*7|1|0.3|ENSG00000164045|chr3:48159372-48159372|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.285400390625	2	531.286617	1060.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.726	1	22.726	22.226	23.226	0								0	0	0	0.3805	1	7601	7601		36.447	0.82846	1				9180	435	5456	5485	9341	9341					0.03082365880004545
EIMSYQIW	8	Unmodified	_EIMSYQIW_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2562866210938	2	535.254785	1068.49502	3.367	0.0018022	-0.9394	-0.00050282	2.4276	0.0012994	535.2541736591818	29.672	0.35721	29.672	29.424	29.781	0					16	7	4	0	0	0	0.44433	1	10908	10908		65.803	2.4969	1	992530			9181	6589	5457	5486	9342	9342					-0.036489945570565396
EINANRADAE	10	Unmodified	_EINANRADAE_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7430419921875	2	551.759809	1101.50507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.31	1	14.31	13.81	14.81	0								0	0	0	0.38475	1	3457	3457		35.152	2.3396	1				9182	1583	5458	5487	9343	9343					-0.041627152981618565
EINPDTGAI	9	Unmodified	_EINPDTGAI_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2335510253906	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.679	1	42.679	42.179	43.179	0								0	0	0	0.2591	1	17047	17047		42.396	10.441	1				9183	1185	5459	5488	9344	9344					-0.01691102098743613
EINVNSVL	8	Unmodified	_EINVNSVL_					0	0	0			REV__ENST00000515433.1_1_5:135382542-135382743:+|nuORF	REV__ENST00000515433.1_1_5:135382542-135382743:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.24493408203125	2	444.245275	886.475997	-1.1584	-0.0005146	0.94903	0.0004216	-0.20934	-9.3E-05	444.2456591361695	28.963	0.14494	28.963	28.851	28.996	0					8	5	2	0	0	0	0.5535	1	9396	9396		54.776	3.4409	1	80320	+		9184	14294	5460	5489	9345	9345					0.028217921435384596
EIPCRCLKL	9	Carbamidomethyl (C)	_EIPC(Carbamidomethyl (C))RCLKL_	EIPC(0.837)RC(0.163)LKL		EIPC(7.1)RC(-7.1)LKL		0	1	0			REV__ENST00000389385.8_1_12:113335508-113335769:+|nuORF	REV__ENST00000389385.8_1_12:113335508-113335769:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.8714904785156	3	377.87195	1130.59402	0.81119	0.00030653	-1.8076	-0.00068303	-0.99638	-0.00037651	377.87158348853694	18.476	0.23648	18.476	18.294	18.53	0					9	5	3	0	0	0	0.25716	1	5424	5424		54.776	11.912	2	325650	+		9185	18806	5461	5490	9346	9346	674				0.03394705136156517
EIQDENNH	8	Unmodified	_EIQDENNH_					0	0	0		nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF;PCDH15|p.K1263Rfs*2|2|0.31|ENSG00000150275|chr10:53857193-53857193|T/-|frameshift_variant;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-2|PCDH15	nc|ENSG00000150275|Q96QU1-2|PCDH15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7121887207031	2	499.712328	997.410102	-1.0358	-0.00051762	0.66531	0.00033246	-0.37052	-0.00018515	499.71275512298337	20.765	0.15461	20.765	20.692	20.846	0					12	5	3	0	0	0	0.67394	1	5846	5846		37.159	1.5408	1	127830			9186	4921	5462	5491	9347	9347					-0.08870648769322997
EIQFYVQQ	8	Unmodified	_EIQFYVQQ_					0	0	0		nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;EPHX2|p.R516Gfs*19|1|0.17|ENSG00000120915|chr8:27544198-27544198|A/-|frameshift_variant;ENSG00000120915|ENST00000521400|EPHX2	nc|ENSG00000120915|P34913-3|EPHX2	nc|ENSG00000120915|P34913-3|EPHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.76416015625	2	527.763832	1053.51311	0.28378	0.00014977	0.74207	0.00039164	1.0258	0.00054141	527.7641525482951	32.828	0.22484	32.828	32.738	32.963	0					13	8	2	0	0	0	0.67394	1	10984	10984		37.159	0	1	117090			9187	3202	5463	5492	9348	9348					-0.011505363107289668
EIRAGTAFY	9	Unmodified	_EIRAGTAFY_					0	0	0		VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant;VWA8|p.G1575Efs*53|1|0.25|ENSG00000102763|chr13:41611729-41611729|C/-|frameshift_variant;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8;VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant;nc|ENSG00000102763|A3KMH1-2|VWA8;VWA8|p.L359*|1|0.4|ENSG00000102763|chr13:41883391-41883391|A/-|frameshift_variant;VWA8|p.N701Kfs*12|1|0.16|ENSG00000102763|chr13:41787504-41787505|-/T|frameshift_variant;VWA8|p.N866Kfs*18|1|0.45|ENSG00000102763|chr13:41729582-41729583|-/T|frameshift_variant	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2658081054688	2	514.263999	1026.51345	0.020236	1.0406E-05	3.3443	0.0017199	3.3646	0.0017303	514.2657082032704	20.33	0.16126	20.33	20.226	20.387	0					5	3	2	0	0	0	0.37197	1	6302	6302		44.117	1.7207	1	469270			9188	2188	5464	5493	9349	9349					0.001248834091484241
EIRFEIEDV	9	Unmodified	_EIRFEIEDV_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.7952880859375	2	575.292953	1148.57135	-1.54	-0.00088597	2.0252	0.0011651	0.48518	0.00027912	575.2941716867654	32.959	0.23951	32.959	32.878	33.118	0					14	7	3	0	0	0	0.24334	1	11512	11512		56.434	6.4003	1	163800			9189	7400	5465	5494	9350	9350					0.003011005439020664
EIRKIQTTT	9	Unmodified	_EIRKIQTTT_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3171997070312	2	545.316763	1088.61897	0.37596	0.00020502	0.30668	0.00016724	0.68265	0.00037226	545.3167659633775	51.55	1.0552	51.55	51.212	52.267	0					92	64	2	0	0	0	0.5741	1	18451	18451		24.519	2.8334	1	92181			9190	6393	5466	5495	9351	9351					0.07820799534761136
EIRKIQTTT	9	Unmodified	_EIRKIQTTT_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3170776367188	2	545.316763	1088.61897	1.9221	0.0010482	0.27062	0.00014757	2.1928	0.0011957	545.316743068158	51.257	1.015	51.257	51.026	52.041	0					124	62	3	0	0	0	0.45358	1	19115	19115		37.159	6.5902	1	158310			9191	6393	5466	5495	9352	9352					0.07820799534761136
EIRPATPAPPA	11	Unmodified	_EIRPATPAPPA_					0	0	0			REV__ENST00000486888.1_1_3:104221713-104221830:+|nuORF	REV__ENST00000486888.1_1_3:104221713-104221830:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.876708984375	3	373.876746	1118.60841	-0.12187	-4.5564E-05	0.18143	6.7832E-05	0.059558	2.2267E-05	373.8767657225773	27.004	0.31532	27.004	26.903	27.219	0					16	8	3	0	0	0	0.65907	1	8792	8792		34.087	0	1	350620	+		9192	19672	5467	5496	9353	9353					0.05384816880314247
EIRPDGQTL	9	Unmodified	_EIRPDGQTL_					0	0	0		ENST00000491165.5_2_3:113396224-113415451:-|nuORF	ENST00000491165.5_2_3:113396224-113415451:-|nuORF	ENST00000491165.5_2_3:113396224-113415451:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7742309570312	2	514.772188	1027.52982	3.2194	0.0016572	0.99817	0.00051383	4.2175	0.0021711	514.7727276011452	38.528	0.49128	38.528	38.186	38.678	0					13	10	2	0	0	0	0.47473	1	15163	15163		35.152	0.97948	1	446000			9193	10068	5468	5497	9354	9354					0.017159645752371944
EISELQPSSH	10	Unmodified	_EISELQPSSH_					0	0	0		ENST00000503848.5_1_5:145435703-145442068:+|nuORF	ENST00000503848.5_1_5:145435703-145442068:+|nuORF	ENST00000503848.5_1_5:145435703-145442068:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7752075195312	2	563.772385	1125.53022	1.8827	0.0010614	2.5517	0.0014386	4.4343	0.0025	563.774150776781	13.286	0.24542	13.286	13.144	13.389	0					15	5	5	0	0	0	0.54861	1	3214	3214		40.058	0.80534	1	1160000			9194	10168	5469	5498	9355	9355					-0.027526604955710354
EISELQPSSH	10	Unmodified	_EISELQPSSH_					0	0	0		ENST00000503848.5_1_5:145435703-145442068:+|nuORF	ENST00000503848.5_1_5:145435703-145442068:+|nuORF	ENST00000503848.5_1_5:145435703-145442068:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.7752075195312	2	563.772385	1125.53022	3.4706	0.0019566	1.0089	0.00056877	4.4795	0.0025254	563.7731615353923	13.281	0.3001	13.281	13.08	13.38	0					17	6	4	0	0	0	0.57211	1	3032	3032		37.508	4.6958	1	1279700			9195	10168	5469	5498	9356	9356					-0.027526604955710354
EISFSKSLY	9	Unmodified	_EISFSKSLY_					0	0	0		ITGAE|p.N1096S|1|0.2|ENSG00000083457|chr17:3720353-3720353|T/C|missense_variant	ITGAE|p.N1096S|1|0.2|ENSG00000083457|chr17:3720353-3720353|T/C|missense_variant	ITGAE|p.N1096S|1|0.2|ENSG00000083457|chr17:3720353-3720353|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2803955078125	2	537.279315	1072.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.298	1	41.298	40.798	41.798	0								0	0	0	0.3368	1	13734	13734		27.882	0	1				9196	11231	5470	5499	9357	9357					0.01070617003551888
EISLQRVV	8	Unmodified	_EISLQRVV_					0	0	0		ZNF454|p.N204Mfs*52|1|0.31|ENSG00000178187|chr5:178965009-178965009|A/-|frameshift_variant;ENSG00000178187|ENST00000519564|ZNF454	ZNF454|p.N204Mfs*52|1|0.31|ENSG00000178187|chr5:178965009-178965009|A/-|frameshift_variant	ZNF454|p.N204Mfs*52|1|0.31|ENSG00000178187|chr5:178965009-178965009|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2823791503906	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.868	1	34.868	34.368	35.368	0								0	0	0	1.7419	1	11777	11777		68.787	14.011	1				9197	6706	5471	5500	9358	9358					0.0762576030585933
EISQASHYF	9	Unmodified	_EISQASHYF_					0	0	0		IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant	IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2517700195312	2	541.251089	1080.48762	0.28823	0.00015601	1.5554	0.00084186	1.8436	0.00099787	541.2514455985556	37.001	0.28737	37.001	36.892	37.179	0					11	8	2	0	0	0	0.26904	1	14014	14014		53.351	5.4358	1	91533			9198	2018	5472	5501	9359	9359					-0.04940010833138331
EISQASHYF	9	Unmodified	_EISQASHYF_					0	0	0		IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant	IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2509155273438	2	541.251089	1080.48762	2.0083	0.001087	-1.0165	-0.00055019	0.9918	0.00053681	541.2498842030026	36.967	0.27281	36.967	36.894	37.167	0					13	8	2	0	0	0	0.24095	1	14439	14439		56.721	1.9564	1	146560			9199	2018	5472	5501	9360	9360					-0.04940010833138331
EISQKQSPK	9	Unmodified	_EISQKQSPK_					0	0	0			REV__MAP9|p.K567Rfs*13|5|0.22|ENSG00000164114|chr4:155352717-155352717|T/-|frameshift_variant	REV__MAP9|p.K567Rfs*13|5|0.22|ENSG00000164114|chr4:155352717-155352717|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7886962890625	2	522.787838	1043.56112	0.34365	0.00017966	1.0233	0.00053495	1.3669	0.00071461	522.7883372533377	26.534	0.14905	26.534	26.48	26.629	0					9	5	2	0	0	0	0.41958	1	8352	8352		40.058	2.2467	1	76383	+		9200	20864	5473	5502	9361	9361					0.04108537609340601
EITGRQAF	8	Unmodified	_EITGRQAF_					0	0	0		ENST00000508090.1_1_5:180242535-180242607:-|nuORF	ENST00000508090.1_1_5:180242535-180242607:-|nuORF	ENST00000508090.1_1_5:180242535-180242607:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2426452636719	2	461.243067	920.47158	-0.84854	-0.00039138	-0.12371	-5.7059E-05	-0.97224	-0.00044844	461.24277389504385	32.345	0.16477	32.345	32.252	32.417	0					13	7	2	0	0	0	0.65148	1	10789	10789		40.778	3.7497	1	88240			9201	10207	5474	5503	9362	9362					0.00816327720622212
EITTALELL	9	Unmodified	_EITTALELL_					0	0	0		ENST00000429927.6_2_4:76555328-76555460:-|nuORF	ENST00000429927.6_2_4:76555328-76555460:-|nuORF	ENST00000429927.6_2_4:76555328-76555460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7901611328125	2	501.789515	1001.56448	-0.55573	-0.00027886	3.548	0.0017803	2.9923	0.0015015	501.7904347551589	43.376	0.14603	43.376	43.291	43.437	0					9	5	2	0	0	0	0.50858	1	17359	17359		24.203	0	1	51602			9202	9480	5475	5504	9363	9363					0.06375787663341725
EIVRTMST	8	Unmodified	_EIVRTMST_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2870788574219	2	468.744585	935.474617	2.5999	0.0012187	-3.6422	-0.0017073	-1.0422	-0.00048855	468.7430014975318	14.682	0.1706	14.682	14.575	14.745	0					7	3	3	0	0	0	0.63077	1	3697	3697		44.117	1.2525	1	251240	+		9203	15931	5476	5505	9364	9364					0.004298347831309002
EIVTFALH	8	Unmodified	_EIVTFALH_					0	0	0			REV__CYP46A1|p.M316I|1|0.09|ENSG00000036530|chr14:99718094-99718094|G/A|missense_variant	REV__CYP46A1|p.M316I|1|0.09|ENSG00000036530|chr14:99718094-99718094|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.25579833984375	2	465.258185	928.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.172	1	18.172	17.672	18.672	0								0	0	0	1.7419	1	4484	4484		33.516	1.9858	1		+		9204	12662	5477	5506	9365	9365					0.034706863857991266
EIVVEEEEE	9	Unmodified	_EIVVEEEEE_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7518310546875	2	552.750784	1103.48702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.334	1	14.334	13.834	14.834	0								0	0	0	0.35899	1	3695	3695		23.042	1.3567	1				9205	7759	5478	5507	9366	9366					-0.060588950635064975
EIYEIHAQLV	10	Unmodified	_EIYEIHAQLV_					0	0	0			REV__ENSG00000178038|ENST00000318962|ALS2CL	REV__ENSG00000178038|ENST00000318962|ALS2CL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.88671875	3	405.552039	1213.63429	0.6189	0.00025099	0.40542	0.00016442	1.0243	0.00041541	405.552202687139	21.63	0.61034	21.63	21.528	22.138	0					34	18	4	0	0	0	0.64178	1	5973	5973		20.837	2.5055	1	491360	+		9206	16720	5479	5508	9367	9367					0.036016663319287545
EIYGPLPVSD	10	Unmodified	_EIYGPLPVSD_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2766723632812	2	545.276772	1088.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.986	1	11.986	11.486	12.486	0								0	0	0	0.4201	1	2588	2588		10.265	0.080485	1		+		9207	13934	5480	5509	9368	9368					-0.0017368685907968029
EKAFDSSII	9	Unmodified	_EKAFDSSII_					0	0	0			REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	337.178466796875	3	337.178202	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.317	1	14.317	13.817	14.817	0								0	0	0	0.3304	1	3461	3461		22.58	0	1		+		9208	21871	5481	5510	9369	9369					0.008860439694331035
EKAHNQDLGL	10	Unmodified	_EKAHNQDLGL_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4;ENST00000480609.1_1_13:111158832-111160640:+|nuORF;ENSG00000134871|ENST00000360467|COL4A2	ENSG00000081052|ENST00000396625|COL4A4;ENSG00000134871|ENST00000360467|COL4A2	ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.2913208007812	2	562.78837	1123.56219	1.868	0.0010513	-3.3782	-0.0019012	-1.5102	-0.00084994	563.2884895841744	29.036	0.42358	29.036	28.911	29.334	0					17	9	2	0	0	0	0.61238	1	10688	10688		32.751	6.0576	1	705130			9209	1653;3947	5482	5511	9370	9370					0.005347519782162635
EKAIVYIQT	9	Unmodified	_EKAIVYIQT_					0	0	0			REV__nc|ENSG00000163599|P16410-5|CTLA4	REV__nc|ENSG00000163599|P16410-5|CTLA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8029174804688	2	532.802957	1063.59136	2.357	0.0012558	-1.242	-0.00066172	1.115	0.00059409	532.8022914313455	38.892	0.13954	38.892	38.817	38.956	0					8	5	2	0	0	0	0.46194	1	14789	14789		36.447	1.246	1	66517	+		9210	21095	5483	5512	9371	9371					0.06210896274501465
EKARTHLP	8	Unmodified	_EKARTHLP_					0	0	0			REV__ENST00000535351.1_1_14:22887819-22887924:-|nuORF	REV__ENST00000535351.1_1_14:22887819-22887924:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.270263671875	2	476.272158	950.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.998	1	13.998	13.498	14.498	0								0	0	0	1.7419	1	3383	3383		73.975	26.059	1		+		9211	20097	5484	5513	9372	9372					0.05252009365904087
EKATIDNL	8	Unmodified	_EKATIDNL_					0	0	0			REV__ENST00000495005.5_1_21:35281377-35288052:-|nuORF	REV__ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.24700927734375	2	452.242732	902.470912	-0.41134	-0.00018602	-0.023859	-1.079E-05	-0.43519	-0.00019681	452.24255806304205	23.776	0.86197	23.776	23.585	24.447	0					42	17	4	0	0	0	0.66095	1	8053	8053		39.253	2.0937	1	16101000	+		9212	17689	5485	5514	9373	9373					0.015774882808955226
EKATRTLPPL	10	Unmodified	_EKATRTLPPL_					0	0	0			REV__ENST00000399000.7_1_21:38639829-38640075:-|nuORF	REV__ENST00000399000.7_1_21:38639829-38640075:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.3356323242188	2	563.334956	1124.65536	0.13226	7.4506E-05	0.54989	0.00030977	0.68215	0.00038428	563.3356815672959	22.942	0.099031	22.942	22.878	22.977	0					6	3	2	0	0	0	0.4947	1	6834	6834		41.427	7.505	1	93679	+		9213	18929	5486	5515	9374	9374					0.09801676431470696
EKDIKEISK	9	Unmodified	_EKDIKEISK_					0	0	0			REV__tr|U7SIQ0|U7SIQ0_FUSNUPyrrolidone-carboxylatepeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pcpPE=3SV=1	REV__tr|U7SIQ0|U7SIQ0_FUSNUPyrrolidone-carboxylatepeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pcpPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.3175659179688	2	545.311146	1088.60774	3.7513	0.0020456	-0.95665	-0.00052167	2.7947	0.001524	545.3099363133305	41.872	0.24169	41.872	41.739	41.981	0					23	7	4	0	0	0	0.42902	1	16659	16659		39.253	0.44669	1	193680	+		9214	21715	5487	5516	9375	9375					0.06697977440603609
EKDQKEKLK	9	Unmodified	_EKDQKEKLK_					0	0	0			REV__ENSG00000180777|ENST00000690538|ANKRD30B	REV__ENSG00000180777|ENST00000690538|ANKRD30B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.330078125	2	573.32987	1144.64519	-0.19956	-0.00011442	0.8134	0.00046634	0.61383	0.00035193	573.3302111914724	34.056	0.16604	34.056	33.978	34.144	0					14	6	3	0	0	0	0.085655	1	11459	11459		82.75	0	1	267970	+		9215	16820	5488	5517	9376	9376					0.0786506870622361
EKDQKEKLK	9	Unmodified	_EKDQKEKLK_					0	0	0			REV__ENSG00000180777|ENST00000690538|ANKRD30B	REV__ENSG00000180777|ENST00000690538|ANKRD30B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.330322265625	2	573.32987	1144.64519	-0.11024	-6.3202E-05	1.0674	0.00061195	0.95713	0.00054875	573.3303095953174	34.249	0.33326	34.249	34.121	34.454	0					22	8	4	0	0	0	0.023928	1	13172	13172		115.49	3.0831	1	1518000	+		9216	16820	5488	5517	9377	9377					0.0786506870622361
EKDQKEKLK	9	Unmodified	_EKDQKEKLK_					0	0	0			REV__ENSG00000180777|ENST00000690538|ANKRD30B	REV__ENSG00000180777|ENST00000690538|ANKRD30B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.3300170898438	2	573.32987	1144.64519	3.362	0.0019275	-2.1684	-0.0012432	1.1935	0.00068429	573.3282593611237	34.221	0.79488	34.221	34.069	34.864	0					34	16	3	0	0	0	0.016683	1	13084	13084		127.46	15.051	1	1685100	+		9217	16820	5488	5517	9378	9378					0.0786506870622361
EKDTEGHSK	9	Unmodified	_EKDTEGHSK_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2431640625	2	515.743628	1029.4727	0.032358	1.6688E-05	3.5653	0.0018388	3.5977	0.0018555	515.7453557899082	17.475	0.32663	17.475	17.331	17.658	0					15	8	3	0	0	0	0.28897	1	4916	4916		51.193	11.94	1	1098700	+		9218	17604	5489	5518	9379	9379					-0.0408550270115029
EKDTLVEM	8	Unmodified	_EKDTLVEM_					0	0	0			REV__ENSG00000109079|ENST00000226225|TNFAIP1	REV__ENSG00000109079|ENST00000226225|TNFAIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.73736572265625	2	482.736425	963.458298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.325	1	15.325	14.825	15.825	0								0	0	0	1.7419	1	3471	3471		25.45	6.0902	1		+		9219	13893	5490	5519	9380	9380					-0.024892911736401402
EKDWVTKEE	9	Unmodified	_EKDWVTKEE_					0	0	0			REV__TXLNA|p.R453W|1|0.08|ENSG00000084652|chr1:32194911-32194911|C/T|missense_variant	REV__TXLNA|p.R453W|1|0.08|ENSG00000084652|chr1:32194911-32194911|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	582.2828369140625	2	582.282586	1162.55062	1.4999	0.00087339	-0.93987	-0.00054727	0.56007	0.00032612	582.2819295044459	28.126	0.2179	28.126	28.065	28.282	0					13	7	3	0	0	0	0.10915	1	8743	8743		77.318	2.2743	1	116120	+		9220	22249	5491	5520	9381	9381					-0.024154898357664933
EKDWVTKEE	9	Unmodified	_EKDWVTKEE_					0	0	0			REV__TXLNA|p.R453W|1|0.08|ENSG00000084652|chr1:32194911-32194911|C/T|missense_variant	REV__TXLNA|p.R453W|1|0.08|ENSG00000084652|chr1:32194911-32194911|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.283203125	2	582.282586	1162.55062	1.42	0.00082682	-0.34571	-0.0002013	1.0743	0.00062552	582.2824763951146	28.424	0.21271	28.424	28.319	28.532	0					8	4	2	0	0	0	0.048471	1	10425	10425		95.815	0	1	819730	+		9221	22249	5491	5520	9382	9382					-0.024154898357664933
EKEAAAVLK	9	Unmodified	_EKEAAAVLK_					0	0	0			REV__ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant	REV__ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.781982421875	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.545	1	27.545	27.045	28.045	0								0	0	0	0.35377	1	9634	9634		24.519	1.4767	1		+		9222	15853	5492	5521	9383	9383					0.0690234058599799
EKEARVGPSP	10	Unmodified	_EKEARVGPSP_					0	0	0			REV__ENST00000511524.1_1_3:139654198-140275504:+|nuORF	REV__ENST00000511524.1_1_3:139654198-140275504:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2855224609375	2	535.285463	1068.55637	1.8081	0.00096783	-0.47185	-0.00025257	1.3362	0.00071525	535.2845516317019	23.703	0.26901	23.703	23.595	23.864	0					12	5	3	0	0	0	0.38507	1	8215	8215		70.399	13.678	1	1481000	+		9223	15679	5493	5522	9384	9384					0.024836534665837462
EKEDTSNIN	9	Unmodified	_EKEDTSNIN_					0	0	0		ENST00000538250.5_1_12:123647559-123649972:-|nuORF;MPHOSPH9|p.T1047Nfs*4|1|0.3|ENSG00000051825|chr12:123161377-123161378|-/T|frameshift_variant;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2442626953125	2	525.240918	1048.46728	3.4413	0.0018075	3.8141	0.0020033	7.2553	0.0038108	525.2427245260945	11.561	0.063958	11.561	11.51	11.574	0					4	2	2	0	0	0	0.30951	1	2262	2262		49.442	7.0454	1	94325			9224	1256	5494	5523	9385	9385					-0.0550122628360441
EKEDTYKL	8	Unmodified	_EKEDTYKL_					0	0	0			REV__ENSG00000129810|ENST00000412997|SGO1	REV__ENSG00000129810|ENST00000412997|SGO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.261474609375	2	513.261122	1024.50769	-0.25234	-0.00012952	1.0455	0.00053661	0.79316	0.0004071	513.2617093860708	38.983	0.18515	38.983	38.906	39.091	0					21	10	3	0	0	0	0.35045	1	13116	13116		76.774	3.8949	1	153570	+		9225	14558	5495	5524	9386	9386					-0.0035825989318709617
EKEDTYKL	8	Unmodified	_EKEDTYKL_					0	0	0			REV__ENSG00000129810|ENST00000412997|SGO1	REV__ENSG00000129810|ENST00000412997|SGO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2614135742188	2	513.261122	1024.50769	1.3014	0.00066795	-1.057	-0.00054253	0.24437	0.00012543	513.2606947209734	39.161	0.32072	39.161	39.05	39.37	0					27	11	4	0	0	0	0.2678	1	15398	15398		93.195	0.052222	1	812990	+		9226	14558	5495	5524	9387	9387					-0.0035825989318709617
EKEEECFEE	9	Unmodified	_EKEEECFEE_					0	0	0			REV__SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant	REV__SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.228759765625	2	586.226619	1170.43868	0.041	2.4036E-05	2.7719	0.0016249	2.8129	0.001649	586.2286297757834	17.152	0.10912	17.152	17.099	17.208	0					7	3	3	0	0	0	0.44593	1	4242	4242		37.812	8.662	1	188120	+		9227	15470	5496	5525	9388	9388					-0.13971711975068501
EKEHPGKRI	9	Unmodified	_EKEHPGKRI_					0	0	0			REV__CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	REV__CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.3098754882812	2	547.309272	1092.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.459	1	14.459	13.959	14.959	0								0	0	0	0.30504	1	3132	3132		34.173	9.9698	1		+		9228	12504	5497	5526	9389	9389					0.0613935245742141
EKEKGLRK	8	Unmodified	_EKEKGLRK_					0	0	0			REV__ENST00000336216.8_1_15:77713046-77713202:+|nuORF	REV__ENST00000336216.8_1_15:77713046-77713202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.3011169433594	2	494.300916	986.587279	-1.269	-0.00062726	1.4738	0.00072849	0.2048	0.00010123	494.3016566848927	16.512	0.18234	16.512	16.43	16.613	0					8	5	3	0	0	0	0.51384	1	3988	3988		58.782	0	1	510080	+		9229	18412	5498	5527	9390	9390					0.09344851571484014
EKEKKVGLY	9	Unmodified	_EKEKKVGLY_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.3164672851562	2	547.316232	1092.61791	0.45737	0.00025033	0.21957	0.00012017	0.67694	0.0003705	547.3165693983277	27.419	0.22124	27.419	27.321	27.542	0					14	5	3	0	0	0	0.30841	1	9583	9583		51.335	8.9393	1	344390			9230	3812	5499	5528	9391	9391					0.07530585165864068
EKEKTFKR	8	Unmodified	_EKEKTFKR_					0	0	0		ENSG00000125351|ENST00000276201|UPF3B;nc|ENSG00000125351|Q9BZI7-2|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.308837890625	2	533.306198	1064.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.421	1	43.421	42.921	43.921	0								0	0	0	1.7419	1	16983	16983		20.947	0.95016	1				9231	3410	5500	5529	9392	9392					0.06812834225888764
EKELEAQLA	9	Unmodified	_EKELEAQLA_					0	0	0			REV__CNTRL|p.K957Rfs*16|1|0.17|ENSG00000119397|chr9:121142265-121142265|A/-|frameshift_variant	REV__CNTRL|p.K957Rfs*16|1|0.17|ENSG00000119397|chr9:121142265-121142265|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7744140625	2	515.774396	1029.53424	0.032553	1.679E-05	0.90268	0.00046558	0.93523	0.00048237	515.7751775661808	32.664	0.65178	32.664	32.531	33.182	0					29	17	3	0	0	0	0.063171	1	11999	11999		90.601	0	1	5127600	+		9232	12539	5501	5530	9393	9393					0.020654289981621332
EKELGERR	8	Unmodified	_EKELGERR_					0	0	0		RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant;ENSG00000197275|ENST00000336148|RAD54B	RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant	RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7778015136719	2	508.777805	1015.54106	-0.10072	-5.1242E-05	0.46915	0.00023869	0.36843	0.00018745	508.7780852305001	19.163	0.074253	19.163	19.121	19.196	0					4	2	2	0	0	0	0.69548	1	4909	4909		34.173	0	1	88763			9233	7444	5502	5531	9394	9394					0.03390786669388035
EKENLTQQ	8	Unmodified	_EKENLTQQ_					0	0	0		PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2490234375	2	495.248546	988.482539	0.084631	4.1913E-05	-0.081143	-4.0186E-05	0.0034885	1.7277E-06	495.2491058368041	16.519	0.090197	16.519	16.476	16.566	0					4	2	2	0	0	0	0.61925	1	3949	3949		35.618	0	1	128290			9234	4643	5503	5532	9395	9395					-0.012163146957732351
EKENQQQL	8	Unmodified	_EKENQQQL_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2928161621094	2	508.753995	1015.49344	0.91164	0.0004638	-1.1952	-0.00060804	-0.28351	-0.00014424	508.75336756319297	14.954	0.23068	14.954	14.902	15.133	0					6	5	2	0	0	0	0.39125	1	3746	3746		71.877	4.3838	1	218380	+		9235	13133	5504	5533	9396	9396					-0.0136891232148173
EKEPDQLQK	9	Unmodified	_EKEPDQLQK_					0	0	0			REV__PLIN3|p.G311D|1|0.24|ENSG00000105355|chr19:4844696-4844696|C/T|missense_variant	REV__PLIN3|p.G311D|1|0.24|ENSG00000105355|chr19:4844696-4844696|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.791259765625	2	557.790578	1113.5666	3.479	0.0019405	-3.471	-0.0019361	0.0079277	4.422E-06	557.7891190046329	25.129	0.41453	25.129	24.884	25.298	0					21	8	3	0	0	0	0.014413	1	8752	8752		131.62	19.205	1	1374500	+		9236	21392	5505	5534	9397	9397					0.014362164011345158
EKEVKLKQ	8	Unmodified	_EKEVKLKQ_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000468150.1_1_9:138757111-138773499:-|nuORF;ENST00000460094.1_1_9:138758268-138774700:-|nuORF;ENST00000312405.10_1_9:138742295-138774724:-|nuORF;CAMSAP1|p.V388Rfs*19|1|0.26|ENSG00000130559|chr9:135827468-135827469|-/G|frameshift_variant;CAMSAP1|p.P417Sfs*23|1|0.04|ENSG00000130559|chr9:135824855-135824856|-/A|frameshift_variant;CAMSAP1|p.Q633Sfs*8|1|0.28|ENSG00000130559|chr9:135822764-135822764|G/-|frameshift_variant;CAMSAP1|p.E781Afs*3|1|0.06|ENSG00000130559|chr9:135822319-135822320|-/G|frameshift_variant	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.30322265625	2	501.303124	1000.5917	-0.044773	-2.2445E-05	1.4403	0.00072205	1.3956	0.0006996	501.3043811332929	25.558	0.41828	25.558	25.326	25.744	0					37	15	4	0	0	0	0.22389	1	7687	7687		127.46	5.2857	1	757100			9237	3649	5506	5535	9398	9398					0.09142315994381534
EKFDKSKL	8	Unmodified	_EKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7819519042969	2	497.782025	993.549496	0.81162	0.00040401	-1.5271	-0.00076015	-0.71546	-0.00035614	497.781443907682	23.54	1.3145	23.54	22.6	23.915	0					74	26	6	0	0	0	0.27565	1	7996	7996		90.601	32.371	1	2473300			9238	5092	5507	5536	9399	9399					0.052463405860066814
EKFGLYGLAE	10	Unmodified	_EKFGLYGLAE_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7979125976562	2	563.792589	1125.57063	1.8797	0.0010598	1.8358	0.001035	3.7155	0.0020948	563.7933304732696	29.015	0.40469	29.015	28.712	29.116	0					20	8	3	0	0	0	0.5276	1	10666	10666		42.338	1.5599	1	506000			9239	6452	5508	5537	9400	9400					0.012863058948596517
EKFWQVIT	8	Unmodified	_EKFWQVIT_					0	0	0			REV__LCT|p.R1514W|1|0.24|ENSG00000115850|chr2:135804053-135804053|G/A|missense_variant	REV__LCT|p.R1514W|1|0.24|ENSG00000115850|chr2:135804053-135804053|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7864990234375	2	525.784567	1049.55458	1.7701	0.0009307	1.2166	0.00063966	2.9867	0.0015704	525.7851852763044	40.568	0.61785	40.568	40.34	40.958	0					53	21	4	0	0	0	0.49216	1	16013	16013		60.972	0	1	1041400	+		9240	20837	5509	5538	9401	9401					0.031786444485987886
EKGAGYVVAY	10	Unmodified	_EKGAGYVVAY_					0	0	0			REV__ENST00000514858.5_1_4:2082849-2194957:-|nuORF	REV__ENST00000514858.5_1_4:2082849-2194957:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7718505859375	2	528.771657	1055.52876	0.10992	5.8122E-05	0.4187	0.0002214	0.52862	0.00027952	528.7718746649894	27.733	0.22264	27.733	27.61	27.833	0					10	5	3	0	0	0	0.49411	1	9739	9739		45.972	3.108	1	351290	+		9241	14608	5510	5539	9402	9402					0.003217502063534994
EKGDRGPL	8	Unmodified	_EKGDRGPL_					0	0	0		nc|ENSG00000197467|Q5TAT6-10|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1;nc|ENSG00000197467|Q5TAT6-11|COL13A1;nc|ENSG00000197467|Q5TAT6-9|COL13A1	nc|ENSG00000197467|Q5TAT6-10|COL13A1	nc|ENSG00000197467|Q5TAT6-10|COL13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.235107421875	2	436.235242	870.45593	-3.0397	-0.001326	1.9168	0.00083617	-1.1229	-0.00048984	436.2362572959669	33.842	0.12614	33.842	33.764	33.89	0					6	3	2	0	0	0	0.75323	1	11911	11911		26.693	1.2427	1	141890			9242	7464	5511	5540	9403	9403					0.015520412035812114
EKGEPIAPLK	10	Unmodified	_EKGEPIAPLK_					0	0	0			REV__ARFGEF3|p.S538L|1|0.28|ENSG00000112379|chr6:138263096-138263096|C/T|missense_variant	REV__ARFGEF3|p.S538L|1|0.28|ENSG00000112379|chr6:138263096-138263096|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.3164672851562	2	541.316232	1080.61791	0.29009	0.00015703	0.092036	4.9821E-05	0.38212	0.00020685	541.3162471184328	37.53	0.50757	37.53	37.283	37.79	0					37	15	3	0	0	0	0.63224	1	14159	14159		30.318	1.1477	1	486440	+		9243	12197	5512	5541	9404	9404					0.08082585165834644
EKGKAGTATL	10	Unmodified	_EKGKAGTATL_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.272216796875	2	488.277106	974.53966	2.5894	0.0012644	-1.053	-0.00051414	1.5364	0.00075021	488.27568678195126	43.701	0.54715	43.701	43.485	44.032	0					29	17	3	0	0	0	0.38179	1	17602	17602		58.246	5.3095	1	164810			9244	2250	5513	5542	9405	9405					0.051371525806075624
EKGKEIAAK	9	Unmodified	_EKGKEIAAK_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000470182.1_1_4:123167396-123168562:+|nuORF	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2872314453125	2	487.287474	972.560395	-0.0027895	-1.3593E-06	-0.43558	-0.00021225	-0.43837	-0.00021361	487.28722743958775	17.106	0.10831	17.106	17.033	17.142	0					8	3	3	0	0	0	0.30841	1	4019	4019		49.536	5.4192	1	204550			9245	4282	5514	5543	9406	9406					0.07301742960260071
EKGLPTPQVL	10	Unmodified	_EKGLPTPQVL_					0	0	0		ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.3162231445312	2	541.316232	1080.61791	0.29009	0.00015703	0.092036	4.9821E-05	0.38212	0.00020685	541.3162471184328	37.53	0.50757	37.53	37.283	37.79	0					37	15	3	0	0	0	0.57211	1	14273	14273		37.508	3.3356	1	486440			9246	1616	5515	5544	9407	9407					0.08082585165857381
EKGTGAFK	8	Unmodified	_EKGTGAFK_					0	0	0		ENST00000453426.1_1_6:32811904-32812045:+|nuORF	ENST00000453426.1_1_6:32811904-32812045:+|nuORF	ENST00000453426.1_1_6:32811904-32812045:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.2266845703125	2	419.226885	836.439217	-0.87965	-0.00036877	0.62402	0.00026161	-0.25563	-0.00010717	419.2270375602158	25.082	0.22585	25.082	24.969	25.195	0					10	5	3	0	0	0	0.27512	1	8519	8519		90.777	3.0802	1	583440			9247	9666	5516	5545	9408	9408					0.014455403176157233
EKGWKVRI	8	Unmodified	_EKGWKVRI_					0	0	0		tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3041076660156	2	508.306001	1014.59745	-0.57274	-0.00029112	-2.5551	-0.0012988	-3.1279	-0.0015899	508.30486281818725	14.161	0.19781	14.161	14.102	14.3	0					18	8	3	0	0	0	0.71588	1	3010	3010		21.96	0	1	103760			9248	22785	5517	5546	9409	9409					0.09073459296701003
EKGYIGIKT	9	Unmodified	_EKGYIGIKT_					0	0	0			REV__tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1	REV__tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7903137207031	2	504.78985	1007.56515	0.78658	0.00039706	0.52595	0.00026549	1.3125	0.00066255	504.79053666757744	32.023	0.13316	32.023	31.977	32.111	0					5	3	2	0	0	0	0.22837	1	11731	11731		58.23	0	1	150950	+		9249	22140	5518	5547	9410	9410					0.06166627103038991
EKHSMSNKH	9	Unmodified	_EKHSMSNKH_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13;nc|ENSG00000133121|Q9Y3M8-5|STARD13;STARD13|p.S964Qfs*4|1|0.28|ENSG00000133121|chr13:33110031-33110031|G/-|frameshift_variant	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2622680664062	2	549.261465	1096.50838	0.25214	0.00013849	1.5673	0.00086084	1.8194	0.00099933	549.2621590844886	19.255	0.16531	19.255	19.148	19.313	0					6	3	2	0	0	0	0.42902	1	6066	6066		39.253	2.0937	1	216630			9250	3842	5519	5548	9411	9411					-0.03601743725130291
EKIEKETLQ	9	Unmodified	_EKIEKETLQ_					0	0	0		nc|ENSG00000103021|Q9H0I3-2|CFAP263;ENSG00000103021|ENST00000219299|CCDC113	nc|ENSG00000103021|Q9H0I3-2|CFAP263	nc|ENSG00000103021|Q9H0I3-2|CFAP263	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098083496094	3	373.208161	1116.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.001	1	45.001	44.501	45.501	0								0	0	0	0.3368	1	18029	18029		21.686	0	1				9251	2205	5520	5549	9412	9412					0.04901673578001464
EKIFKIVAN	9	Unmodified	_EKIFKIVAN_					0	0	0		ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3206176757812	2	531.321317	1060.62808	0.67393	0.00035807	-1.4192	-0.00075403	-0.74523	-0.00039596	531.3210529105847	53.233	0.14647	53.233	53.176	53.323	0					11	9	2	0	0	0	0.50858	1	16257	16257		31.53	9.5699	1	38330			9252	7933	5521	5550	9413	9413					0.10019192891104467
EKIIEKKN	8	Unmodified	_EKIIEKKN_					0	0	0			REV__tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	REV__tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.8060302734375	2	501.303124	1000.5917	-2.1055	-0.0010555	3.2488	0.0016286	1.1433	0.00057312	501.3053246562007	25.641	0.31758	25.641	25.46	25.778	0					22	8	4	0	0	0	0.23635	1	8127	8127		118.74	20.114	1	984960	+		9253	21892	5522	5551	9414	9414					0.09142315994370165
EKIILEAAL	9	Unmodified	_EKIILEAAL_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;nc|ENSG00000090615|Q08378-4|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.30633544921875	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.503	1	13.503	13.003	14.003	0								0	0	0	0.36609	1	3149	3149		20.947	0	1				9254	1839	5523	5552	9415	9415					0.10184084279887884
EKIKEFSP	8	Unmodified	_EKIKEFSP_					0	0	0		tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2661437988281	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.614	1	19.614	19.114	20.114	0								0	0	0	1.7419	1	5345	5345		25.45	1.2474	1				9255	22733	5524	5553	9416	9416					0.03374651694662134
EKIKGGIHTA	10	Unmodified	_EKIKGGIHTA_					0	0	0		RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant;ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.87310791015625	3	351.873224	1052.59784	1.4523	0.00051102	-1.2187	-0.00042883	0.23357	8.2186E-05	351.8726847834573	33.948	0.30811	33.948	33.842	34.15	0					14	6	4	0	0	0	0.6796	1	12973	12973		29.551	12.083	1	516480			9256	4215	5525	5554	9417	9417					0.07364834225904815
EKIKKHFEA	9	Unmodified	_EKIKKHFEA_					0	0	0			REV__ENSG00000203666|ENST00000366523|EFCAB2;REV__nc|ENSG00000203666|Q5VUJ9|EFCAB2	REV__ENSG00000203666|ENST00000366523|EFCAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.21527099609375	3	377.216991	1128.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.708	1	13.708	13.208	14.208	0								0	0	0	0.37786	1	2856	2856		17.468	0.75062	1		+		9257	17457;21189	5526	5555	9418	9418					0.0699740725999618
EKIKNDSKK	9	Unmodified	_EKIKNDSKK_					0	0	0		tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3175048828125	2	545.316763	1088.61897	1.9515	0.0010642	0.58801	0.00032065	2.5395	0.0013849	545.3169132646261	51.466	1.0895	51.466	51.021	52.11	0					94	64	2	0	0	0	0.5741	1	20118	20118		24.519	0.31644	1	146840			9258	22910	5527	5556	9419	9419					0.07820799534761136
EKILNCVL	8	Unmodified	_EKILNCVL_					0	0	0		ENST00000509089.1_1_4:62453105-62542754:+|nuORF	ENST00000509089.1_1_4:62453105-62542754:+|nuORF	ENST00000509089.1_1_4:62453105-62542754:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2670593261719	2	466.267696	930.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.788	1	37.788	37.288	38.288	0								0	0	0	1.7419	1	14798	14798		29.15	3.6994	1				9259	10218	5528	5557	9420	9420					0.05279899685194778
EKIRMKVVF	9	Unmodified	_EKIRMKVVF_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.3455200195312	2	575.344269	1148.67399	-0.079375	-4.5668E-05	2.5407	0.0014618	2.4614	0.0014161	575.3456254203339	55.055	0.13258	55.055	54.952	55.085	0					11	8	2	0	0	0	0.60749	1	19860	19860		20.947	1.8434	1	53648	+		9260	14269	5529	5558	9421	9421					0.105595148016846
EKITLAKLR	9	Unmodified	_EKITLAKLR_					0	0	0			REV__ENST00000372025.4_1_1:46152902-46153073:+|nuORF	REV__ENST00000372025.4_1_1:46152902-46153073:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.3458862304688	2	536.347866	1070.68118	0.19449	0.00010431	-2.5657	-0.0013761	-2.3712	-0.0012718	536.3461781609632	26.964	0.096596	26.964	26.914	27.01	0					4	2	2	0	0	0	0.30951	1	9372	9372		49.442	0	1	499470	+		9261	18660	5530	5559	9422	9422					0.14866570673734714
EKITLSPR	8	Unmodified	_EKITLSPR_					0	0	0		nc|nan|Q8WVX3-2|C4orf3	nc|nan|Q8WVX3-2|C4orf3	nc|nan|Q8WVX3-2|C4orf3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2815856933594	2	472.282192	942.549831	-0.12316	-5.8169E-05	-1.0821	-0.00051103	-1.2052	-0.0005692	472.2817731550777	38.129	0.13968	38.129	38.045	38.184	0					6	4	2	0	0	0	0.62915	1	14941	14941		44.377	3.599	1	42513			9262	11840	5531	5560	9423	9423					0.07625760305847962
EKKASEVGR	9	Unmodified	_EKKASEVGR_					0	0	0		ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant;ALK|p.Q908Rfs*3|1|0.19|ENSG00000171094|chr2:29228977-29228977|G/-|frameshift_variant;ALK|p.W915Gfs*24|1|0.42|ENSG00000171094|chr2:29228957-29228957|C/-|frameshift_variant;ENSG00000171094|ENST00000389048|ALK	ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant	ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.28033447265625	2	502.28018	1002.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.706	1	10.706	10.206	11.206	0								0	0	0	0.38913	1	2085	2085		14.137	1.9303	1				9263	117	5532	5561	9424	9424					0.04463670812151577
EKKASHQHQ	9	Unmodified	_EKKASHQHQ_					0	0	0		nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;ENSG00000174450|ENST00000567107|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.280029296875	2	546.780879	1091.5472	3.8178	0.0020875	-4.4419	-0.0024287	-0.62414	-0.00034127	547.2792185368019	28.487	0.5661	28.487	28.277	28.843	0					32	11	5	0	0	0	0.24095	1	10288	10288		56.721	1.9447	1	2219400			9264	6490	5533	5562	9425	9425					0.00509304900879215
EKKAWTPSR	9	Unmodified	_EKKAWTPSR_					0	0	0		nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.8057861328125	2	551.803823	1101.59309	3.6914	0.0020369	-0.003373	-1.8612E-06	3.688	0.0020351	551.803873965025	26.829	0.36518	26.829	26.671	27.036	0					16	7	3	0	0	0	0.098791	1	9512	9512		79.713	2.395	1	2967000			9265	1788	5534	5563	9426	9426					0.046359500831158584
EKKCTHDP	8	Unmodified	_EKKCTHDP_					0	0	0			REV__ENSG00000258436|ENST00000696784|RNASE12	REV__ENSG00000258436|ENST00000696784|RNASE12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.22686767578125	2	479.226559	956.438566	-0.46602	-0.00022333	1.0641	0.00050993	0.59805	0.0002866	479.22711382717614	43.868	0.12339	43.868	43.826	43.949	0					7	5	2	0	0	0	0.67394	1	17129	17129		37.159	1.5408	1	132660	+		9266	17768	5535	5564	9427	9427					-0.041396223937454124
EKKFDHSK	8	Unmodified	_EKKFDHSK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;BOD1L1|p.V570*|4|0.23|ENSG00000038219|chr4:13608565-13608565|T/-|frameshift_variant;BOD1L1|p.V667Gfs*6|1|0.06|ENSG00000038219|chr4:13604900-13604901|-/C|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7716064453125	2	509.769448	1017.52434	0.94918	0.00048386	2.3913	0.001219	3.3405	0.0017029	509.7707992347298	14.678	0.37852	14.678	14.456	14.834	0					22	9	3	0	0	0	0.5535	1	3594	3594		54.776	1.8396	1	420180			9267	1179	5536	5565	9428	9428					0.01628285783431238
EKKGQDSEP	9	Unmodified	_EKKGQDSEP_					0	0	0		HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant;HIVEP2|p.N2325Kfs*44|1|0.35|ENSG00000010818|chr6:142753473-142753474|-/T|frameshift_variant;ENSG00000010818|ENST00000367603|HIVEP2;HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant	HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant	HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2459716796875	2	509.246003	1016.47745	-0.10565	-5.3804E-05	0.14557	7.413E-05	0.039913	2.0325E-05	509.2460252282165	19.192	0.13515	19.192	19.121	19.256	0					8	4	2	0	0	0	0.47473	1	4923	4923		35.152	0	1	130640			9268	1042	5537	5566	9429	9429					-0.030126185583867482
EKKKANQLS	9	Unmodified	_EKKKANQLS_					0	0	0		ENSG00000186399|ENST00000327271|GOLGA8R;ENSG00000232653|ENST00000448387|GOLGA8N;ENSG00000206127|ENST00000509311|GOLGA8O;ENSG00000178115|ENST00000562783|GOLGA8Q	ENSG00000186399|ENST00000327271|GOLGA8R	ENSG00000186399|ENST00000327271|GOLGA8R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.8060913085938	2	523.303655	1044.59276	0.058952	3.085E-05	0.91148	0.00047698	0.97043	0.00050783	523.3039719267941	50.15	0.89745	50.15	49.96	50.857	0					73	55	2	0	0	0	0.61124	1	15146	15146		15.642	1.5047	1	77545			9269	6702	5538	5567	9430	9430					0.07224530363282611
EKKMMEKRV	9	Oxidation (M)	_EKKMM(Oxidation (M))EKRV_		EKKM(0.014)M(0.986)EKRV		EKKM(-19)M(19)EKRV	0	0	1			REV__tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	REV__tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.8219604492188	2	597.820301	1193.62605	1.8815	0.0011248	1.0747	0.0006425	2.9563	0.0017673	597.820886543499	18.313	0.21509	18.313	18.206	18.421	0					7	4	2	0	0	0	0.24334	1	5471	5471		56.434	17.181	2	1067000	+		9270	21918	5539	5568	9431	9431		793			0.036980728192929746
EKKNGMPDY	9	Unmodified	_EKKNGMPDY_					0	0	0			REV__ENSG00000150873|ENST00000381585|C2orf50	REV__ENSG00000150873|ENST00000381585|C2orf50	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2529907226562	2	541.252774	1080.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.186	1	34.186	33.686	34.686	0								0	0	0	0.3119	1	11166	11166		32.812	1.2335	1		+		9271	15457	5540	5569	9432	9432					-0.0460308405079104
EKKPRRTK	8	Unmodified	_EKKPRRTK_					0	0	0		ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.3270874023438	2	521.827632	1041.64071	1.777	0.00092728	-2.2829	-0.0011913	-0.50588	-0.00026398	522.3270548392896	32.223	0.37959	32.223	32.081	32.46	0					24	8	4	0	0	0	0.67394	1	12221	12221		37.159	1.5408	1	1215900			9272	6232	5541	5570	9433	9433					0.12155649073974928
EKKQLCVLQ	9	Unmodified	_EKKQLCVLQ_					0	0	0		CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.8085327148438	2	544.810259	1087.60597	-1.4956	-0.0008148	-1.0719	-0.00058397	-2.5674	-0.0013988	544.8095985794781	31.552	0.46029	31.552	31.463	31.923	0					25	13	3	0	0	0	0.12278	1	10865	10865		87.696	28.914	1	555120			9273	472	5542	5571	9434	9434					0.06566645151019657
EKKQPVDLGLL	11	Unmodified	_EKKQPVDLGLL_					0	0	0		ENST00000476463.1_1_7:96337506-96339075:-|nuORF;ENSG00000127922|ENST00000248566|SEM1	ENST00000476463.1_1_7:96337506-96339075:-|nuORF	ENST00000476463.1_1_7:96337506-96339075:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3683471679688	2	620.368995	1238.72344	0.17618	0.0001093	-0.013097	-8.125E-06	0.16308	0.00010117	620.3689560216098	26.109	3.0531	26.109	26	29.053	0					111	62	3	0	0	0	0.79867	1	10465	10465		11.636	9.2904	1	1251000			9274	3520	5543	5572	9435	9435					0.11362501291455374
EKKRLVIVA	9	Unmodified	_EKKRLVIVA_					0	0	0			REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3504028320312	2	528.350409	1054.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.399	1	16.399	15.899	16.899	0								0	0	0	0.3368	1	4679	4679		27.882	2.3082	1		+		9275	21956	5544	5573	9436	9436					0.16110874536366282
EKKWNNVL	8	Unmodified	_EKKWNNVL_					0	0	0			REV__ENST00000463267.5_1_8:95411790-95423517:-|nuORF	REV__ENST00000463267.5_1_8:95411790-95423517:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7877197265625	2	515.787641	1029.56073	1.5148	0.00078131	-2.8065	-0.0014476	-1.2918	-0.00066627	515.7858773011161	16.944	0.31334	16.944	16.828	17.141	0					16	6	3	0	0	0	0.41701	1	4805	4805		68.787	7.8149	1	569300	+		9276	17323	5545	5574	9437	9437					0.04713162680127425
EKLAQELA	8	Unmodified	_EKLAQELA_					0	0	0		ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2528381347656	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.456	1	26.456	25.956	26.956	0								0	0	0	1.7419	1	9127	9127		74.255	0	1				9277	3632	5546	5575	9438	9438					0.037420786605594
EKLAQLQEQL	10	Unmodified	_EKLAQLQEQL_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.3348999023438	2	600.335153	1198.65575	-0.15107	-9.0692E-05	0.063739	3.8264E-05	-0.087331	-5.2428E-05	600.3351885406116	36.455	0.15424	36.455	36.408	36.563	0					9	4	3	0	0	0	0.0063842	1	13756	13756		161.51	5.3511	1	256250	+		9278	14924	5547	5576	9439	9439					0.0643705136067183
EKLAQLQEQL	10	Unmodified	_EKLAQLQEQL_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.3357543945312	2	600.335153	1198.65575	3.1194	0.0018727	-3.1381	-0.0018839	-0.018674	-1.1211E-05	600.3335694690329	36.403	0.21591	36.403	36.297	36.513	0					9	4	3	0	0	0	0.022935	1	14158	14158		123.11	8.2534	1	308750	+		9279	14924	5547	5576	9440	9440					0.0643705136067183
EKLDNLNPM	9	Unmodified	_EKLDNLNPM_					0	0	0			REV__ENSG00000008086|ENST00000623535|CDKL5	REV__ENSG00000008086|ENST00000623535|CDKL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2684936523438	2	537.268424	1072.5223	0.21499	0.00011551	0.6819	0.00036636	0.89689	0.00048187	537.2686473566455	39.276	1.3319	39.276	38.68	40.012	0					105	50	3	0	0	0	0.24095	1	14899	14899		56.721	12.604	1	186180	+		9280	12876	5548	5577	9441	9441					-0.011065110166782688
EKLEEMVLE	9	Unmodified	_EKLEEMVLE_					0	0	0			REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.2822265625	2	560.28374	1118.55293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.064	1	30.064	29.564	30.564	0								0	0	0	0.3368	1	11200	11200		27.882	0.83493	1		+		9281	13059	5549	5578	9442	9442					-0.0016077742229754222
EKLFQRCLM	9	Oxidation (M)	_EKLFQRCLM(Oxidation (M))_		EKLFQRCLM(1)		EKLFQRCLM(43)	0	0	1		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.M122Nfs*6|1|0.25|ENSG00000176102|chr11:33106056-33106057|-/T|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.3017578125	2	592.301744	1182.58893	0.51148	0.00030295	-1.4723	-0.00087202	-0.96078	-0.00056907	592.3013461300643	34.623	0.39291	34.623	34.462	34.855	0					25	12	4	0	0	0	0.38666	1	12259	12259		42.864	13.715	1	135980			9282	6589	5550	5579	9443	9443		271			0.004944012735450087
EKLGGSAII	9	Unmodified	_EKLGGSAII_					0	0	0		CFL1|p.V158I|1|0.12|ENSG00000172757|chr11:65855365-65855365|C/T|missense_variant;ENST00000508046.1_1_5:68609200-68609404:-|nuORF	CFL1|p.V158I|1|0.12|ENSG00000172757|chr11:65855365-65855365|C/T|missense_variant	CFL1|p.V158I|1|0.12|ENSG00000172757|chr11:65855365-65855365|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2634582519531	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.341	1	33.341	32.841	33.841	0								0	0	0	0.29774	1	12320	12320		35.618	3.6634	1				9283	498	5551	5580	9444	9444					0.06458669040239329
EKLIKEKN	8	Unmodified	_EKLIKEKN_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.80548095703125	2	501.303124	1000.5917	-0.10911	-5.4699E-05	1.2672	0.00063527	1.1581	0.00058057	501.3042272324412	25.837	0.83623	25.837	25.573	26.409	0					43	18	5	0	0	0	0.2301	1	8805	8805		148.99	12.719	1	6358200	+		9284	13536	5552	5581	9445	9445					0.09142315994370165
EKLLCFLVLT	10	Unmodified	_EKLLCFLVLT_					0	0	0		nc|ENSG00000132693|P02741-2|CRP;ENSG00000132693|ENST00000255030|CRP	nc|ENSG00000132693|P02741-2|CRP	nc|ENSG00000132693|P02741-2|CRP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.8444213867188	2	589.84631	1177.67807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.286	1	19.286	18.786	19.786	0								0	0	0	0.3805	1	6070	6070		36.447	2.2742	1				9285	3809	5553	5582	9446	9446					0.0963355950470941
EKLLHEKL	8	Unmodified	_EKLLHEKL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;ENST00000489332.1_1_X:70467340-70473105:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.3050537109375	2	505.305667	1008.59678	0.11172	5.6453E-05	-1.0299	-0.0005204	-0.91815	-0.00046395	505.3052689329388	33.596	0.19677	33.596	33.493	33.689	0					10	5	2	0	0	0	0.66372	1	11809	11809		38.806	1.647	1	93397			9286	4766	5554	5583	9447	9447					0.09282619856992369
EKLQNVRQ	8	Unmodified	_EKLQNVRQ_					0	0	0			REV__ENSG00000153879|ENST00000284000|CEBPG	REV__ENSG00000153879|ENST00000284000|CEBPG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7882080078125	2	507.788173	1013.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.154	1	11.154	10.654	11.654	0								0	0	0	1.7419	1	2222	2222		27.882	0	1		+		9287	15550	5555	5584	9448	9448					0.05555377049040544
EKLRGCSPF	9	Unmodified	_EKLRGCSPF_					0	0	0			REV__nc|ENSG00000157168|Q02297-9|NRG1	REV__nc|ENSG00000157168|Q02297-9|NRG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.767822265625	2	518.765852	1035.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.466	1	24.466	23.966	24.966	0								0	0	0	0.14517	1	8444	8444		60.972	18.576	1		+		9288	21078	5556	5585	9449	9449					0.0008122991134769109
EKLRKRTE	8	Unmodified	_EKLRKRTE_					0	0	0		ENST00000508482.5_1_17:48797176-48828101:+|nuORF;LUC7L3|p.S389Kfs*2|3|0.28|ENSG00000108848|chr17:50750520-50750521|-/A|frameshift_variant;LUC7L3|p.S389Vfs*3|1|0.27|ENSG00000108848|chr17:50750521-50750521|A/-|frameshift_variant;LUC7L3|p.S389Kfs*4|1|0.13|ENSG00000108848|chr17:50750520-50750521|-/AA|frameshift_variant;ENSG00000108848|ENST00000505658|LUC7L3	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.8804016113281	3	353.88049	1058.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.848	1	15.848	15.348	16.348	0								0	0	0	1.7419	1	3633	3633		26.693	0	1				9289	2555	5557	5586	9450	9450					0.09267638974483816
EKLRMEELK	9	Unmodified	_EKLRMEELK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.3279418945312	2	588.326273	1174.63799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.859	1	18.859	18.359	19.359	0								0	0	0	0.27521	1	5006	5006		32.812	11.127	1		+		9290	15602;22247	5558	5587	9451	9451					0.0576601283414675
EKLTGPALM	9	Unmodified	_EKLTGPALM_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2644348144531	2	480.265153	958.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.518	1	26.518	26.018	27.018	0								0	0	0	0.23445	1	8070	8070		45.972	3.5761	1				9291	7419	5559	5588	9452	9452					0.03483595822581265
EKLTLILQ	8	Unmodified	_EKLTLILQ_					0	0	0		ENST00000464058.1_1_21:18981288-18985128:-|nuORF;ENSG00000154640|ENST00000348354|BTG3;nc|ENSG00000154640|Q14201-2|BTG3	ENST00000464058.1_1_21:18981288-18985128:-|nuORF	ENST00000464058.1_1_21:18981288-18985128:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.8000183105469	2	479.302593	956.590633	0.47278	0.00022661	-4.3322	-0.0020764	-3.8594	-0.0018498	479.30210045514224	35.481	0.4951	35.481	35.344	35.839	0					35	13	4	0	0	0	0.43813	1	13290	13290		66.429	5.4573	1	945240			9292	5094	5560	5589	9453	9453					0.11060101625469088
EKLVDAHPI	9	Unmodified	_EKLVDAHPI_					0	0	0			REV__tr|U7T2L7|U7T2L7_FUSNUPropanedioldehydratasemediumsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00494PE=4SV=1	REV__tr|U7T2L7|U7T2L7_FUSNUPropanedioldehydratasemediumsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00494PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.287353515625	2	511.287474	1020.5604	0.019697	1.0071E-05	0.33498	0.00017127	0.35468	0.00018134	511.2878242283479	18.531	0.41362	18.531	18.37	18.784	0					12	8	2	0	0	0	0.5879	1	5551	5551		23.042	1.0826	1	237930	+		9293	22109	5561	5590	9454	9454					0.05093742960275449
EKMPCTKKDP	10	Unmodified	_EKMPCTKKDP_					0	0	0			REV__nc|ENSG00000101346|Q9H488-2|POFUT1	REV__nc|ENSG00000101346|Q9H488-2|POFUT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.7908325195312	2	588.791209	1175.56787	-1.7586	-0.0010355	1.0309	0.00060697	-0.72778	-0.00042851	588.7917921462879	16.155	0.1129	16.155	16.115	16.228	0					7	3	3	0	0	0	0.030421	1	3772	3772		117.81	32.65	1	135180	+		9294	13600	5562	5591	9455	9455					-0.012896088259594762
EKMPLLTL	8	Unmodified	_EKMPLLTL_					0	0	0		ENST00000469092.5_1_17:72701487-72709092:-|nuORF;ENST00000583544.1_1_17:72700560-72709059:-|nuORF	ENST00000469092.5_1_17:72701487-72709092:-|nuORF	ENST00000469092.5_1_17:72701487-72709092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7796630859375	2	472.777896	943.54124	3.7309	0.0017639	0.52958	0.00025037	4.2605	0.0020143	472.7781204895291	18.479	0.16441	18.479	18.418	18.582	0					10	5	3	0	0	0	0.58597	1	4828	4828		51.335	10.763	1	320520			9295	9820	5563	5592	9456	9456					0.06721070345031421
EKMQRVQVL	9	Unmodified	_EKMQRVQVL_					0	0	0		ENST00000518792.5_1_8:17509137-17509233:-|nuORF	ENST00000518792.5_1_8:17509137-17509233:-|nuORF	ENST00000518792.5_1_8:17509137-17509233:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.5521240234375	3	377.549864	1129.62776	3.2554	0.0012291	1.9582	0.00073932	5.2136	0.0019684	377.5507811905487	16.771	0.61259	16.771	16.714	17.326	0					38	12	4	0	0	0	0.1424	1	4722	4722		69.628	2.6657	1	25594000			9296	10282	5564	5593	9457	9457					0.0681344989959598
EKNDKDKKI	9	Unmodified	_EKNDKDKKI_					0	0	0		nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENST00000536573.6_1_12:1213918-1353789:+|nuORF;ERC1|p.L811Yfs*3|1|0.08|ENSG00000082805|chr12:1236848-1236849|-/ATGTA|frameshift_variant;ERC1|p.K806Efs*29|1|0.44|ENSG00000082805|chr12:1236824-1236825|-/A|frameshift_variant;ENSG00000187672|ENST00000288221|ERC2;ERC2|p.D867Mfs*31|1|0.61|ENSG00000187672|chr3:55734885-55734885|T/-|frameshift_variant	nc|ENSG00000082805|Q8IUD2-5|ERC1;ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.3145751953125	2	559.31422	1116.61389	-0.79939	-0.00044711	0.99877	0.00055862	0.19937	0.00011151	559.3148968495426	25.455	0.2346	25.455	25.373	25.608	0					8	6	2	0	0	0	0.46194	1	8092	8092		36.447	3.6343	1	77053			9297	7208;1684	5565	5594	9458	9458					0.06024495672136254
EKNGKELQI	9	Unmodified	_EKNGKELQI_					0	0	0			REV__ENSG00000109805|ENST00000251496|NCAPG	REV__ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7955322265625	2	529.795663	1057.57677	2.3376	0.0012384	-2.9481	-0.0015619	-0.61048	-0.00032343	529.7940135298019	33.787	0.27241	33.787	33.62	33.893	0					10	7	2	0	0	0	0.07136	1	12518	12518		87.696	10.379	1	344030	+		9298	13915	5566	5595	9459	9459					0.05028824126384279
EKNIVHQY	8	Unmodified	_EKNIVHQY_					0	0	0			REV__CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant	REV__CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7689208984375	2	515.769448	1029.52434	-0.088944	-4.5874E-05	-2.0085	-0.0010359	-2.0974	-0.0010818	515.7685080000414	17.34	0.1183	17.34	17.278	17.396	0					6	4	2	0	0	0	0.79567	1	4335	4335		17.365	0.64758	1	57046	+		9299	12645	5567	5596	9460	9460					0.010762857834379247
EKNLCAEV	8	Unmodified	_EKNLCAEV_					0	0	0			REV__ENSG00000102572|ENST00000539966|STK24	REV__ENSG00000102572|ENST00000539966|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.22332763671875	2	453.223485	904.432418	-2.6194	-0.0011872	2.0549	0.00093134	-0.56448	-0.00025584	453.2244929940027	23.657	0.24492	23.657	23.502	23.747	0					9	6	2	0	0	0	0.69548	1	7255	7255		34.173	0.65696	1	89556	+		9300	13640	5568	5597	9461	9461					-0.02362140625268694
EKNQVTNVA	9	Unmodified	_EKNQVTNVA_					0	0	0			REV__nc|ENSG00000138346|P51530-4|DNA2	REV__nc|ENSG00000138346|P51530-4|DNA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.77667236328125	2	501.764363	1001.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.08	1	17.08	16.58	17.58	0								0	0	0	0.10826	1	5009	5009		69.628	2.134	1		+		9301	14969	5569	5598	9462	9462					0.013476780581981984
EKNRGRLI	8	Unmodified	_EKNRGRLI_					0	0	0		ENST00000520779.1_1_8:2088796-2113099:+|nuORF;ENSG00000036448|ENST00000262113|MYOM2	ENST00000520779.1_1_8:2088796-2113099:+|nuORF	ENST00000520779.1_1_8:2088796-2113099:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.2013244628906	3	329.201564	984.582862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.966	1	26.966	26.466	27.466	0								0	0	0	1.7419	1	9715	9715		21.96	1.1227	1				9302	1173	5570	5599	9463	9463					0.08995387148559075
EKPKLQPP	8	Unmodified	_EKPKLQPP_					0	0	0		ENST00000565652.1_1_15:75660495-75660924:-|nuORF	ENST00000565652.1_1_15:75660495-75660924:-|nuORF	ENST00000565652.1_1_15:75660495-75660924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.779052734375	2	468.779285	935.544017	0.56204	0.00026347	-1.0673	-0.00050035	-0.50531	-0.00023688	468.7785473608949	27.767	1.469	27.767	27.34	28.809	0					69	29	3	0	0	0	0.67394	1	9985	9985		37.159	3.6435	1	504070			9303	10754	5571	5600	9464	9464					0.07366661794185347
EKPRDKSY	8	Unmodified	_EKPRDKSY_					0	0	0		nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7677307128906	2	511.766906	1021.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.848	1	20.848	20.348	21.348	0								0	0	0	1.7419	1	6820	6820		63.306	9.9548	1				9304	1612	5572	5601	9465	9465					0.009359819208043518
EKPRDKSY	8	Unmodified	_EKPRDKSY_					0	0	0		nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7681579589844	2	511.766906	1021.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.683	1	20.683	20.183	21.183	0								0	0	0	1.7419	1	5862	5862		44.117	0	1				9305	1612	5572	5601	9466	9466					0.009359819208043518
EKPYKCNSCGK	11	Unmodified	_EKPYKCNSCGK_					0	0	0		nc|ENSG00000198464|Q8WV37-3|ZNF480;nc|ENSG00000198464|Q8WV37-2|ZNF480;ENSG00000198464|ENST00000595962|ZNF480;ENSG00000178917|ENST00000436261|ZNF852;nc|ENSG00000178917|Q6ZMS4|ZNF852	nc|ENSG00000198464|Q8WV37-3|ZNF480	nc|ENSG00000198464|Q8WV37-3|ZNF480	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	628.7940063476562	2	628.79174	1255.56893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.848	1	10.848	10.348	11.348	0								0	0	0	0.45674	1	2064	2064		16.717	0	1				9306	7563	5573	5602	9467	9467					-0.04863394457083814
EKQCKCAEKP	10	Unmodified	_EKQCKCAEKP_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2	REV__ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.2828369140625	2	582.281008	1162.54746	1.6522	0.00096206	1.8722	0.0010902	3.5244	0.0020522	582.2818250390336	28.361	0.31653	28.361	28.194	28.511	0					22	6	6	0	0	0	0.15477	1	10251	10251		85.862	10.819	1	1610000	+		9307	13102	5574	5603	9468	9468					-0.0273077948579612
EKQKESWQL	9	Unmodified	_EKQKESWQL_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000489177.1_1_2:112630836-112638411:-|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.541015625	3	392.540022	1174.59824	3.1857	0.0012505	-1.0571	-0.00041497	2.1286	0.00083556	392.53976386768574	28.486	0.51628	28.486	28.327	28.843	0					26	10	4	0	0	0	0.48623	1	10336	10336		33.922	33.922	1	874740			9308	5037	5575	5604	9469	9469					0.01792209155087221
EKQLQQELL	9	Unmodified	_EKQLQQELL_					0	0	0		nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;HDAC9|p.D553Mfs*46|1|0.4|ENSG00000048052|chr7:18666406-18666412|CAGTGGA/-|frameshift_variant;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000048052|Q9UKV0-6|HDAC9;HDAC9|p.V41D|1|0.19|ENSG00000048052|chr7:18585380-18585380|T/A|missense_variant;HDAC9|p.R42H|1|0.05|ENSG00000048052|chr7:18585383-18585383|G/A|missense_variant	nc|ENSG00000048052|Q9UKV0-10|HDAC9	nc|ENSG00000048052|Q9UKV0-10|HDAC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.8172607421875	2	564.816596	1127.61864	-0.35533	-0.00020069	1.1699	0.00066075	0.81453	0.00046006	564.8172158201173	28.716	0.4777	28.716	28.482	28.96	0					52	18	4	0	0	0	0.5741	1	9219	9219		24.519	7.1542	1	981920			9309	1226	5576	5605	9470	9470					0.059933798148904316
EKQLTPAKL	9	Unmodified	_EKQLTPAKL_					0	0	0			REV__ENSG00000031691|ENST00000335783|CENPQ	REV__ENSG00000031691|ENST00000335783|CENPQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.3114013671875	2	514.310949	1026.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.341	1	31.341	30.841	31.841	0								0	0	0	0.12601	1	11706	11706		65.465	3.358	1		+		9310	12967	5577	5606	9471	9471					0.09510602511409161
EKQQRELER	9	Unmodified	_EKQQRELER_					0	0	0			REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.88604736328125	3	405.886192	1214.63675	0.66637	0.00027047	-0.95905	-0.00038926	-0.29268	-0.00011879	405.88580890564185	19.833	0.32015	19.833	19.723	20.044	0					10	6	3	0	0	0	0.48623	1	6214	6214		33.922	4.7516	1	575310	+		9311	13460	5578	5607	9472	9472					0.038015147896203416
EKQVLLQADW	10	Unmodified	_EKQVLLQADW_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579;ZNF579|p.P264Rfs*141|1|0.3|ENSG00000218891|chr19:55578854-55578854|C/-|frameshift_variant	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	615.3297729492188	2	615.32987	1228.64519	-0.70835	-0.00043587	0.73584	0.00045278	0.027484	1.6912E-05	615.3304121992056	25.958	0.265	25.958	25.818	26.083	0					11	5	3	0	0	0	0.36647	1	8899	8899		56.721	7.2795	1	438580			9312	7843	5579	5608	9473	9473					0.04001068706247679
EKQVLLQADW	10	Unmodified	_EKQVLLQADW_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579;ZNF579|p.P264Rfs*141|1|0.3|ENSG00000218891|chr19:55578854-55578854|C/-|frameshift_variant	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	615.3302612304688	2	615.32987	1228.64519	0.33124	0.00020382	0.60272	0.00037087	0.93395	0.00057469	615.3302191443842	25.958	0.19994	25.958	25.817	26.017	0					6	3	2	0	0	0	0.58308	1	9245	9245		39.253	7.723	1	316690			9313	7843	5579	5608	9474	9474					0.04001068706247679
EKRADIQLN	9	Unmodified	_EKRADIQLN_					0	0	0		ENST00000595108.5_1_19:6733949-6737021:-|nuORF;ENSG00000125734|ENST00000264080|GPR108	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7990112304688	2	543.798737	1085.58292	0.383	0.00020828	1.3054	0.00070987	1.6884	0.00091815	543.7989801560225	18.311	0.10636	18.311	18.26	18.366	0					6	4	2	0	0	0	0.27249	1	4766	4766		52.937	4.9772	1	67397			9314	3432	5580	5609	9475	9475					0.043553423578941874
EKRELEKL	8	Unmodified	_EKRELEKL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8065185546875	2	522.806031	1043.59751	0.45196	0.00023629	0.59262	0.00030982	1.0446	0.00054611	522.8063570905988	26.562	0.21929	26.562	26.451	26.671	0					9	4	3	0	0	0	0.37144	1	9410	9410		74.255	0	1	203250	+		9315	13022	5581	5610	9476	9476					0.07745414506052839
EKRETFVQ	8	Unmodified	_EKRETFVQ_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7769775390625	2	518.774731	1035.53491	3.3451	0.0017354	1.0199	0.00052908	4.365	0.0022644	518.7752763170369	50.912	0.12311	50.912	50.863	50.986	0					10	7	2	0	0	0	0.61938	1	20000	20000		45.952	0	1	56546			9316	4755	5582	5611	9477	9477					0.018562684378593985
EKRFTVTIG	9	Unmodified	_EKRFTVTIG_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant;ZC3H18|p.R680Qfs*14|1|0.38|ENSG00000158545|chr16:88624732-88624733|-/C|frameshift_variant;ZC3H18|p.Q804Sfs*15|1|0.32|ENSG00000158545|chr16:88628051-88628051|C/-|frameshift_variant	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8033447265625	2	525.800749	1049.58694	3.4511	0.0018146	1.5773	0.00082933	5.0283	0.0026439	525.8015488028914	13.283	0.43253	13.283	13.035	13.467	0					11	9	2	0	0	0	0.4966	1	3055	3055		32.812	2.3088	1	1003500			9317	5269	5583	5612	9478	9478					0.06413431851638052
EKRGKKSK	8	Unmodified	_EKRGKKSK_					0	0	0		SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG;SPEG|p.E351K|1|0.32|ENSG00000072195|chr2:219448209-219448209|G/A|missense_variant;SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant;SPEG|p.T870Pfs*11|1|0.35|ENSG00000072195|chr2:219462043-219462043|C/-|frameshift_variant;SPEG|p.T870Hfs*52|1|0.36|ENSG00000072195|chr2:219462042-219462043|-/C|frameshift_variant;SPEG|p.R1307Gfs*12|1|0.34|ENSG00000072195|chr2:219472303-219472303|C/-|frameshift_variant;SPEG|p.S1915Vfs*324|1|0.21|ENSG00000072195|chr2:219483200-219483200|C/-|frameshift_variant;SPEG|p.Q2233Rfs*6|2|0.25|ENSG00000072195|chr2:219484154-219484154|C/-|frameshift_variant;SPEG|p.M1971Wfs*268|1|0.31|ENSG00000072195|chr2:219483369-219483369|C/-|frameshift_variant;SPEG|p.R2315Qfs*8|1|0.31|ENSG00000072195|chr2:219484399-219484400|-/C|frameshift_variant;SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant	SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.8006896972656	2	480.801083	959.587613	-0.19396	-9.3257E-05	-0.34226	-0.00016456	-0.53623	-0.00025782	480.8007399855825	53.91	0.19903	53.91	53.841	54.04	0					23	12	2	0	0	0	0.73426	1	18899	18899		29.15	7.1897	1	113020			9318	1485	5584	5613	9479	9479					0.10620271291327299
EKRIAAALL	9	Unmodified	_EKRIAAALL_					0	0	0		ENST00000351218.6_1_19:38138775-38145719:-|nuORF	ENST00000351218.6_1_19:38138775-38145719:-|nuORF	ENST00000351218.6_1_19:38138775-38145719:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	328.8785095214844	3	328.878198	983.612765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.745	1	13.745	13.245	14.245	0								0	0	0	0.28164	1	2867	2867		30.318	0	1				9319	8772	5585	5614	9480	9480					0.12030326093884014
EKRKEPDQI	9	Unmodified	_EKRKEPDQI_					0	0	0			REV__VIPAS39|p.D268E|1|0.43|ENSG00000151445|chr14:77437840-77437840|G/C|missense_variant	REV__VIPAS39|p.D268E|1|0.43|ENSG00000151445|chr14:77437840-77437840|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5447998046875	3	381.543655	1141.60914	3.2335	0.0012337	0.051796	1.9762E-05	3.2853	0.0012535	381.54369903467904	25.411	0.6008	25.411	25.281	25.882	0					16	10	2	0	0	0	0.36135	1	8895	8895		45.022	5.149	1	897770	+		9320	22274	5586	5615	9481	9481					0.04399611529379399
EKRLHATEA	9	Unmodified	_EKRLHATEA_					0	0	0			REV__TRRAP-ASNS|1|fusion;REV__TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant	REV__TRRAP-ASNS|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7855224609375	2	527.78563	1053.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.391	1	15.391	14.891	15.891	0								0	0	0	0.21054	1	4199	4199		49.442	5.3247	1		+		9321	17246;22239	5587	5616	9482	9482					0.03207073186422349
EKRLNMALQ	9	Unmodified	_EKRLNMALQ_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.8060913085938	2	551.805508	1101.59646	0.25953	0.00014321	-0.023799	-1.3133E-05	0.23573	0.00013008	551.805787151818	26.607	0.22466	26.607	26.519	26.743	0					20	8	4	0	0	0	0.48623	1	8379	8379		19.997	0	1	472250			9322	5503	5588	5617	9483	9483					0.04972876865485887
EKRQEQIAK	9	Unmodified	_EKRQEQIAK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.3201293945312	2	565.319837	1128.62512	1.9069	0.001078	-1.0638	-0.00060138	0.84308	0.00047661	565.3192416089912	13.931	0.45973	13.931	13.824	14.284	0					14	9	3	0	0	0	0.1424	1	3514	3514		69.628	4.1622	1	1197000			9323	4145	5589	5618	9484	9484					0.06595317766277731
EKRVDLIQ	8	Unmodified	_EKRVDLIQ_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.1977844238281	3	334.197708	999.571294	0.51969	0.00017368	-1.0518	-0.00035152	-0.53215	-0.00017784	334.19768878006	18.245	0.44785	18.245	18.025	18.473	0					13	10	2	0	0	0	0.75323	1	5314	5314		22.58	5.1116	1	576190			9324	5134;11594	5590	5619	9485	9485					0.07149145334562945
EKSCKCEK	8	Unmodified	_EKSCKCEK_					0	0	0		ZNF540|p.F281Lfs*4|4|0.31|ENSG00000171817|chr19:37612117-37612117|T/-|frameshift_variant;nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540	ZNF540|p.F281Lfs*4|4|0.31|ENSG00000171817|chr19:37612117-37612117|T/-|frameshift_variant	ZNF540|p.F281Lfs*4|4|0.31|ENSG00000171817|chr19:37612117-37612117|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.72235107421875	2	477.722795	953.431037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.639	1	18.639	18.139	19.139	0								0	0	0	1.7419	1	4906	4906		74.255	7.8258	1				9325	6323	5591	5620	9486	9486					-0.04754097985676253
EKSEKRALN	9	Unmodified	_EKSEKRALN_					0	0	0			REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8004760742188	2	537.798737	1073.58292	3.3453	0.0017991	1.0196	0.00054834	4.3649	0.0023474	537.798961644852	10.984	0.070145	10.984	10.949	11.019	0					6	4	2	0	0	0	0.22377	1	2096	2096		58.782	4.0056	1	43436	+		9326	16301	5592	5621	9487	9487					0.04907342357910238
EKSIKQKF	8	Unmodified	_EKSIKQKF_					0	0	0			REV__ENSG00000152382|ENST00000367874|TADA1	REV__ENSG00000152382|ENST00000367874|TADA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.29840087890625	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.826	1	28.826	28.326	29.326	0								0	0	0	1.7419	1	9620	9620		45.972	0	1		+		9327	15505	5593	5622	9488	9488					0.07810333339944009
EKSIQGAPSM	10	Unmodified	_EKSIQGAPSM_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2611694335938	2	524.260599	1046.50665	1.7835	0.00093502	-0.37498	-0.00019659	1.4085	0.00073843	524.2603298576796	36.892	0.39545	36.892	36.771	37.167	0					29	12	3	0	0	0	0.39827	1	14393	14393		56.434	1.6575	1	309630	+		9328	16499	5594	5623	9489	9489					-0.014747975337513708
EKSPFTKRA	9	Unmodified	_EKSPFTKRA_					0	0	0			REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5	REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2996215820312	2	532.298373	1062.58219	0.12356	6.5772E-05	1.511	0.00080431	1.6346	0.00087008	532.2992138759245	26.572	0.52877	26.572	26.481	27.01	0					21	12	2	0	0	0	0.24095	1	9196	9196		56.721	7.2795	1	538960	+		9329	14202	5595	5624	9490	9490					0.05340547708851773
EKSRDKER	8	Unmodified	_EKSRDKER_					0	0	0			REV__nc|ENSG00000153914|Q8WXA9|SREK1	REV__nc|ENSG00000153914|Q8WXA9|SREK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2822875976562	2	524.280712	1046.54687	0.072373	3.7944E-05	2.8875	0.0015138	2.9598	0.0015518	524.2821822190195	25.678	0.16845	25.678	25.569	25.738	0					5	3	2	0	0	0	0.75323	1	9158	9158		26.693	1.1189	1	67385	+		9330	15551	5596	5625	9491	9491					0.025458851810299166
EKSRWNPVS	9	Unmodified	_EKSRWNPVS_					0	0	0			REV__ENST00000359901.8_1_2:98128184-98128274:-|nuORF	REV__ENST00000359901.8_1_2:98128184-98128274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.78857421875	2	551.78563	1101.55671	0.58897	0.00032498	4.4837	0.002474	5.0727	0.002799	551.7880878222737	12.409	0.092795	12.409	12.347	12.44	0					5	3	2	0	0	0	0.39215	1	2609	2609		42.396	5.9494	1	281460	+		9331	18550	5597	5626	9492	9492					0.00999073186426358
EKTEILFF	8	Unmodified	_EKTEILFF_					0	0	0		SLC10A5|p.M211Ifs*49|1|0.1|ENSG00000253598|chr8:81694340-81694341|-/A|frameshift_variant;SLC10A5|p.A299Qfs*4|1|0.24|ENSG00000253598|chr8:81694079-81694079|T/-|frameshift_variant;ENSG00000253598|ENST00000518568|SLC10A5	SLC10A5|p.M211Ifs*49|1|0.1|ENSG00000253598|chr8:81694340-81694341|-/A|frameshift_variant	SLC10A5|p.M211Ifs*49|1|0.1|ENSG00000253598|chr8:81694340-81694341|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7798461914062	2	513.778951	1025.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.223	1	12.223	11.723	12.723	0								0	0	0	1.7419	1	2527	2527		57.811	0	1				9332	7999	5598	5627	9493	9493					0.03159822354473363
EKTGTTAVSR	10	Unmodified	_EKTGTTAVSR_					0	0	0			REV__ENST00000592259.1_1_19:12875564-12875981:-|nuORF	REV__ENST00000592259.1_1_19:12875564-12875981:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2848510742188	2	525.28292	1048.55129	0.59321	0.0003116	3.7583	0.0019742	4.3515	0.0022858	525.2851379427909	27.143	0.205	27.143	27.048	27.253	0					12	7	2	0	0	0	0.63019	1	8596	8596		30.569	6.0497	1	90606	+		9333	20537	5599	5628	9494	9494					0.02895349603932118
EKTKFPALG	9	Unmodified	_EKTKFPALG_					0	0	0			REV__ENSG00000172661|ENST00000623400|WASHC2C	REV__ENSG00000172661|ENST00000623400|WASHC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.78302001953125	2	495.784567	989.554582	-1.2182	-0.00060398	-2.9163	-0.0014458	-4.1345	-0.0020498	495.7835116909353	13.953	0.077898	13.953	13.899	13.977	0					5	3	2	0	0	0	0.27249	1	2949	2949		29.15	0	1	72017	+		9334	13490	5600	5629	9495	9495					0.0593864444861083
EKTLKIAKM	9	Unmodified	_EKTLKIAKM_					0	0	0		ENST00000420068.1_1_21:34602513-34619036:+|nuORF	ENST00000420068.1_1_21:34602513-34619036:+|nuORF	ENST00000420068.1_1_21:34602513-34619036:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.32080078125	2	531.323002	1060.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.167	1	17.167	16.667	17.667	0								0	0	0	0.19749	1	4251	4251		51.335	1.8939	1				9335	9392	5601	5630	9496	9496					0.1035611967342902
EKTLTIGQQG	10	Unmodified	_EKTLTIGQQG_					0	0	0			REV__KDM6A|p.N906Mfs*31|1|0.53|ENSG00000147050|chrX:45076707-45076707|A/-|frameshift_variant	REV__KDM6A|p.N906Mfs*31|1|0.53|ENSG00000147050|chrX:45076707-45076707|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7936401367188	2	537.793121	1073.57169	-0.31245	-0.00016803	2.84	0.0015274	2.5276	0.0013593	537.7947024819105	15.66	0.093187	15.66	15.604	15.697	0					6	4	2	0	0	0	0.41384	1	3613	3613		54.722	13.944	1	70899	+		9336	15329	5602	5631	9497	9497					0.03784520263775448
EKTMMKKY	8	Unmodified	_EKTMMKKY_					0	0	0			REV__ENSG00000182534|ENST00000449428|MXRA7	REV__ENSG00000182534|ENST00000449428|MXRA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7730102539062	2	529.772288	1057.53002	2.3369	0.001238	-0.71203	-0.00037721	1.6249	0.00086082	529.7718512469396	22.566	0.18498	22.566	22.474	22.659	0					9	4	3	0	0	0	0.54629	1	7364	7364		55.504	5.4797	1	490180	+		9337	16887	5603	5632	9498	9498					0.0035592497922607436
EKTPPVLKI	9	Unmodified	_EKTPPVLKI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.8236694335938	2	512.823692	1023.63283	0.0088127	4.5194E-06	0.29624	0.00015192	0.30505	0.00015644	512.8239566204288	42.162	0.2828	42.162	41.92	42.203	0					22	14	2	0	0	0	0.47473	1	15945	15945		35.152	4.8343	1	55673	+		9338	17188	5604	5633	9499	9499					0.12196077033843267
EKTQLNATP	9	Unmodified	_EKTQLNATP_					0	0	0			REV__ENSG00000102753|ENST00000261667|KPNA3	REV__ENSG00000102753|ENST00000261667|KPNA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.26513671875	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.616	1	38.616	38.116	39.116	0								0	0	0	0.22284	1	13018	13018		47.657	0	1		+		9339	13644	5605	5634	9500	9500					0.018685622009343206
EKTQRRRL	8	Unmodified	_EKTQRRRL_					0	0	0		nc|ENSG00000146833|Q9C037-3|TRIM4;TRIM4|p.N373Tfs*57|1|0.3|ENSG00000146833|chr7:99892548-99892548|T/-|frameshift_variant;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4	REV__FMNL3|p.A979T|1|0.39|ENSG00000161791|chr12:49646946-49646946|C/T|missense_variant	REV__FMNL3|p.A979T|1|0.39|ENSG00000161791|chr12:49646946-49646946|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.829833984375	2	543.828163	1085.64177	3.6569	0.0019887	-0.53044	-0.00028847	3.1265	0.0017003	543.8278227283486	18.396	0.46248	18.396	18.19	18.653	0					19	9	4	0	0	0	0.51384	1	5511	5511		58.782	58.782	1	1397100			9340	4748	5606	5635	9501	9501					0.10237863442898743
EKTVAKVQV	9	Unmodified	_EKTVAKVQV_					0	0	0		ENST00000483923.5_1_10:100150731-100167745:-|nuORF;PYROXD2|p.P449Lfs*5|1|0.23|ENSG00000119943|chr10:98388455-98388455|G/-|frameshift_variant;ENSG00000119943|ENST00000370575|PYROXD2	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.53765869140625	3	334.537842	1000.5917	0.65414	0.00021883	-1.4691	-0.00049148	-0.815	-0.00027265	334.5372629108905	25.877	0.22491	25.877	25.744	25.969	0					8	3	3	0	0	0	0.33044	1	8869	8869		46.457	8.6453	1	1297400			9341	3150	5607	5636	9502	9502					0.09142315994370165
EKTVLNSEVL	10	Unmodified	_EKTVLNSEVL_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.3158569335938	2	566.316428	1130.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.283	1	23.283	22.783	23.783	0								0	0	0	0.074065	1	8001	8001		85.161	13.283	1				9342	7186	5608	5637	9503	9503					0.05821960095045142
EKVELLEKA	9	Unmodified	_EKVELLEKA_					0	0	0		NUGGC|p.K555Yfs*17|1|0.07|ENSG00000189233|chr8:28033646-28033647|-/AGGTA|frameshift_variant;ENSG00000189233|ENST00000413272|NUGGC	NUGGC|p.K555Yfs*17|1|0.07|ENSG00000189233|chr8:28033646-28033647|-/AGGTA|frameshift_variant	NUGGC|p.K555Yfs*17|1|0.07|ENSG00000189233|chr8:28033646-28033647|-/AGGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8080444335938	2	529.808239	1057.60193	1.7347	0.00091905	-0.88131	-0.00046693	0.85337	0.00045212	529.8078822065511	44.084	0.14161	44.084	44.026	44.167	0					10	8	2	0	0	0	0.076532	1	17196	17196		79.713	0	1	346310			9343	7311	5609	5638	9504	9504					0.07542878928961727
EKVELLEKA	9	Unmodified	_EKVELLEKA_					0	0	0		NUGGC|p.K555Yfs*17|1|0.07|ENSG00000189233|chr8:28033646-28033647|-/AGGTA|frameshift_variant;ENSG00000189233|ENST00000413272|NUGGC	NUGGC|p.K555Yfs*17|1|0.07|ENSG00000189233|chr8:28033646-28033647|-/AGGTA|frameshift_variant	NUGGC|p.K555Yfs*17|1|0.07|ENSG00000189233|chr8:28033646-28033647|-/AGGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8088989257812	2	529.808239	1057.60193	3.4457	0.0018256	-1.681	-0.00089063	1.7647	0.00093496	529.8072557496822	44.042	0.15844	44.042	43.944	44.103	0					10	6	2	0	0	0	0.40353	1	17626	17626		42.396	10.866	1	82651			9344	7311	5609	5638	9505	9505					0.07542878928961727
EKVFEKLLQ	9	Unmodified	_EKVFEKLLQ_					0	0	0		tr|U7SUB8|U7SUB8_FUSNU5-formyltetrahydrofolatecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01094PE=3SV=1	tr|U7SUB8|U7SUB8_FUSNU5-formyltetrahydrofolatecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01094PE=3SV=1	tr|U7SUB8|U7SUB8_FUSNU5-formyltetrahydrofolatecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01094PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.55810546875	3	378.557013	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.067	1	20.067	19.567	20.567	0								0	0	0	0.18645	1	6446	6446		51.528	0	1				9345	22819	5610	5639	9506	9506					0.0881915819995811
EKVGEQPTL	9	Unmodified	_EKVGEQPTL_					0	0	0		nc|ENSG00000136688|Q9NZH8-2|IL36G;ENSG00000136688|ENST00000259205|IL36G	nc|ENSG00000136688|Q9NZH8-2|IL36G	nc|ENSG00000136688|Q9NZH8-2|IL36G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7699890136719	2	500.769114	999.523675	0.39313	0.00019687	0.16809	8.4173E-05	0.56122	0.00028104	500.76909314650516	34.993	0.20493	34.993	34.901	35.106	0					12	8	2	0	0	0	0.16002	1	11459	11459		66.429	0.96389	1	342140			9346	4098	5611	5640	9507	9507					0.023894463437159175
EKVIIMLIK	9	Unmodified	_EKVIIMLIK_					0	0	0			REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF	REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.9046936035156	3	362.903356	1085.68824	3.1274	0.001135	0.54554	0.00019798	3.673	0.0013329	362.9035414104531	15.971	0.21522	15.971	15.865	16.08	0					11	4	4	0	0	0	0.55048	1	4339	4339		27.047	0.98393	1	1893600	+		9347	18571	5612	5641	9508	9508					0.1488216722996185
EKVINYLV	8	Unmodified	_EKVINYLV_					0	0	0		ENSG00000267978|ENST00000595065|MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9	ENSG00000267978|ENST00000595065|MAGEA9B	ENSG00000267978|ENST00000595065|MAGEA9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.28680419921875	2	489.286943	976.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.816	1	38.816	38.316	39.316	0								0	0	0	1.7419	1	15244	15244		37.159	5.2042	1				9348	3330	5613	5642	9509	9509					0.0701152859138574
EKVKELNLHE	10	Unmodified	_EKVKELNLHE_					0	0	0		ENSG00000101236|ENST00000358395|RNF24;nc|ENSG00000101236|Q9Y225-2|RNF24	ENSG00000101236|ENST00000358395|RNF24	ENSG00000101236|ENST00000358395|RNF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.5626220703125	3	413.562827	1237.66665	-0.40707	-0.00016835	-0.34973	-0.00014463	-0.7568	-0.00031298	413.56251655465474	32.076	0.21749	32.076	31.969	32.186	0					8	4	2	0	0	0	0.63851	1	12073	12073		29.551	2.801	1	207610			9349	2104	5614	5643	9510	9510					0.057324537349586535
EKVRDVKQ	8	Unmodified	_EKVRDVKQ_					0	0	0			REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.8292236328125	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.287	1	16.287	15.787	16.787	0								0	0	0	1.7419	1	4478	4478		39.253	3.6345	1		+		9350	19381	5615	5644	9511	9511					0.06628261191804086
EKVRSPKPK	9	Unmodified	_EKVRSPKPK_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.837890625	2	534.82984	1067.64513	1.7931	0.00095898	-0.05548	-2.9673E-05	1.7376	0.00092931	534.8292689131478	18.195	0.62309	18.195	17.887	18.51	0					27	12	3	0	0	0	0.46194	1	5484	5484		36.447	2.2742	1	2041700	+		9351	17632	5616	5645	9512	9512					0.11401113496890503
EKVSETPIK	9	Unmodified	_EKVSETPIK_					0	0	0			REV__ENSG00000139324|ENST00000266712|TMTC3	REV__ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2955322265625	2	515.792589	1029.57063	0.17599	9.0774E-05	4.3072	0.0022216	4.4831	0.0023124	516.2967703893542	34.537	0.20835	34.537	34.443	34.651	0					7	4	2	0	0	0	0.21263	1	13239	13239		60.118	2.307	1	182040	+		9352	15023	5617	5646	9513	9513					0.057023058948516336
EKWDIPKKG	9	Unmodified	_EKWDIPKKG_					0	0	0			REV__nc|ENSG00000076248|P13051-2|UNG	REV__nc|ENSG00000076248|P13051-2|UNG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8096923828125	2	550.808574	1099.60259	1.8311	0.0010086	-0.56702	-0.00031232	1.2641	0.00069627	550.8083079800672	38.76	0.20305	38.76	38.648	38.851	0					19	8	3	0	0	0	0.095583	1	14712	14712		64.207	0	1	260910	+		9353	13247	5618	5647	9514	9514					0.056777183686335775
EKWPQSTDKL	10	Unmodified	_EKWPQSTDKL_					0	0	0			REV__ENSG00000198569|ENST00000673835|SLC34A3	REV__ENSG00000198569|ENST00000673835|SLC34A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.57025146484375	3	411.215427	1230.62445	0.056807	2.336E-05	-0.95032	-0.00039079	-0.89351	-0.00036743	411.2150022768357	12.992	0.45955	12.992	12.854	13.313	0					21	10	4	0	0	0	0.69544	1	3008	3008		22.58	1.7425	1	792130	+		9354	17406	5619	5648	9515	9515					0.018364783265724327
EKWRGVSNK	9	Unmodified	_EKWRGVSNK_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.302978515625	2	552.301447	1102.58834	3.6734	0.0020288	-0.7899	-0.00043626	2.8835	0.0015926	552.3011476150793	37.829	0.34859	37.829	37.674	38.022	0					16	7	3	0	0	0	0.15163	1	14813	14813		67.494	1.0644	1	479960	+		9355	14109	5620	5649	9516	9516					0.04115065940391105
EKWSISKH	8	Unmodified	_EKWSISKH_					0	0	0		nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3;nc|ENSG00000083067|Q9HCF6-10|TRPM3;TRPM3|p.S1466Ffs*8|1|0.04|ENSG00000083067|chr9:70536682-70536683|-/CGTTCCAAAA|frameshift_variant	nc|ENSG00000083067|Q9HCF6-8|TRPM3	nc|ENSG00000083067|Q9HCF6-8|TRPM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7715148925781	2	507.771991	1013.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.108	1	13.108	12.608	13.608	0								0	0	0	1.7419	1	2614	2614		30.504	2.6214	1				9356	1687	5621	5650	9517	9517					0.02320589646035387
EKYDVSSQV	9	Unmodified	_EKYDVSSQV_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7569580078125	2	527.756204	1053.49785	2.1329	0.0011256	-1.5717	-0.00082949	0.56115	0.00029615	527.755831580629	38.168	0.1779	38.168	38.097	38.275	0					11	7	2	0	0	0	0.1424	1	14508	14508		69.628	7.5202	1	69957			9357	2402	5622	5651	9518	9518					-0.026754478985594687
EKYIDQPLG	9	Unmodified	_EKYIDQPLG_					0	0	0			REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.85223388671875	3	354.853718	1061.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.297	1	13.297	12.797	13.797	0								0	0	0	0.31838	1	2997	2997		31.53	0.96095	1		+		9358	21007	5623	5652	9519	9519					0.011017328607522359
EKYIKGLVDSL	11	Unmodified	_EKYIKGLVDSL_					0	0	0		tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2420654296875	3	422.243094	1263.70745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.877	1	19.877	19.377	20.377	0								0	0	0	0.43806	1	6220	6220		28.577	2.685	1				9359	22799	5624	5653	9520	9520					0.08614795054586466
EKYLRSVL	8	Unmodified	_EKYLRSVL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.161	1	56.161	55.661	56.661	0								0	0	0	1.7419	1	20076	20076		14.865	0	1				9360	7502	5625	5654	9521	9521					0.07810333339955378
ELAEGLLLHI	10	Unmodified	_ELAEGLLLHI_					0	0	0		NLRC4|p.Q324H|1|0.36|ENSG00000091106|chr2:32250892-32250892|T/G|missense_variant	NLRC4|p.Q324H|1|0.36|ENSG00000091106|chr2:32250892-32250892|T/G|missense_variant	NLRC4|p.Q324H|1|0.36|ENSG00000091106|chr2:32250892-32250892|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.22265625	3	369.88513	1106.63356	0.45708	0.00016907	-0.1664	-6.1549E-05	0.29068	0.00010752	369.88493884408103	23.303	1.3265	23.303	23.123	24.45	0					87	30	4	0	0	0	0.58189	1	7908	7908		36.447	3.6962	1	24641000			9361	11859	5626	5655	9522	9522					0.08450871682907746
ELAIPKNPAS	10	Unmodified	_ELAIPKNPAS_					0	0	0		ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.19854736328125	3	347.197596	1038.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.068	1	49.068	48.568	49.568	0								0	0	0	0.4201	1	19449	19449		15.333	0	1				9362	2281	5627	5656	9523	9523					0.05321725614680872
ELALAKKQ	8	Unmodified	_ELALAKKQ_					0	0	0		ENSG00000163263|ENST00000368525|CFAP141	ENSG00000163263|ENST00000368525|CFAP141	ENSG00000163263|ENST00000368525|CFAP141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7791442871094	2	450.779285	899.544017	-0.10387	-4.6822E-05	-0.17458	-7.8696E-05	-0.27845	-0.00012552	450.7791765423661	33.443	0.1989	33.443	33.309	33.508	0					6	4	2	0	0	0	0.51384	1	12795	12795		58.782	2.3482	1	100170			9363	5541	5628	5657	9524	9524					0.09022661794188025
ELALKGSTV	9	Unmodified	_ELALKGSTV_					0	0	0			REV__ENST00000260361.8_2_15:41694416-41694521:-|nuORF	REV__ENST00000260361.8_2_15:41694416-41694521:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2686767578125	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.181	1	24.181	23.681	24.681	0								0	0	0	0.3245	1	7103	7103		30.318	1.1682	1		+		9364	18008	5629	5658	9525	9525					0.06134651694662807
ELANHHAR	8	Unmodified	_ELANHHAR_					0	0	0			REV__nc|ENSG00000125952|P61244-6|MAX	REV__nc|ENSG00000125952|P61244-6|MAX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2447509765625	2	474.243932	946.473312	0.69367	0.00032897	1.4173	0.00067214	2.1109	0.0010011	474.2447382115581	43.536	0.22112	43.536	43.415	43.636	0					11	7	2	0	0	0	0.65276	1	17402	17402		40.573	1.7665	1	52527	+		9365	14451	5630	5659	9526	9526					-0.0020661847077008133
ELANTLEDPQ	10	Unmodified	_ELANTLEDPQ_					0	0	0			REV__CACNA1G|p.E769D|1|0.36|ENSG00000006283|chr17:50590476-50590476|G/T|missense_variant	REV__CACNA1G|p.E769D|1|0.36|ENSG00000006283|chr17:50590476-50590476|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2740478515625	2	565.272218	1128.52988	3.4709	0.001962	-0.38112	-0.00021544	3.0898	0.0017466	565.272003903209	23.709	0.36232	23.709	23.552	23.914	0					20	7	4	0	0	0	0.11308	1	8066	8066		93.143	25.65	1	1202700	+		9366	12315	5631	5660	9527	9527					-0.02924080215439062
ELAQNRLH	8	Unmodified	_ELAQNRLH_					0	0	0		nc|ENSG00000006757|P41247-2|PNPLA4;ENSG00000006757|ENST00000381042|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7689514160156	2	490.76724	979.519927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.254	1	33.254	32.754	33.754	0								0	0	0	1.7419	1	12624	12624		73.975	2.0973	1				9367	988	5632	5661	9528	9528					0.029348213605089768
ELAQTGPSL	9	Unmodified	_ELAQTGPSL_					0	0	0			REV__ENST00000245441.9_2_14:51288794-51297818:-|nuORF	REV__ENST00000245441.9_2_14:51288794-51297818:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2432556152344	2	458.242732	914.470912	-0.15535	-7.1187E-05	0.49475	0.00022672	0.33941	0.00015553	458.24287923723415	35.721	0.16259	35.721	35.613	35.775	0					7	4	2	0	0	0	0.24095	1	13844	13844		56.721	12.344	1	85307	+		9368	17941	5633	5662	9529	9529					0.010254882809135779
ELARLALQ	8	Unmodified	_ELARLALQ_					0	0	0			REV__GSDMD|p.R321Q|1|0.54|ENSG00000104518|chr8:143562097-143562097|G/A|missense_variant	REV__GSDMD|p.R321Q|1|0.54|ENSG00000104518|chr8:143562097-143562097|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2766418457031	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.051	1	35.051	34.551	35.551	0								0	0	0	1.7419	1	13555	13555		64.207	2.0999	1		+		9369	13730	5634	5663	9530	9530					0.07949777651424483
ELAVHNECY	9	Unmodified	_ELAVHNECY_					0	0	0		nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2373046875	2	539.237124	1076.45969	0.302	0.00016285	1.6612	0.00089576	1.9632	0.0010586	539.2376672556027	14.722	0.40205	14.722	14.525	14.927	0					13	8	2	0	0	0	0.19605	1	3871	3871		62.107	22.855	1	150160			9370	11623	5635	5664	9531	9531					-0.0754765708488776
ELAWIRLL	8	Unmodified	_ELAWIRLL_					0	0	0			REV__ENST00000540129.5_1_12:118472774-118472945:-|nuORF	REV__ENST00000540129.5_1_12:118472774-118472945:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.3125	2	507.310752	1012.60695	2.9439	0.0014935	0.546	0.00027699	3.4899	0.0017704	507.3112271378633	43.834	0.50368	43.834	43.617	44.121	0					46	17	4	0	0	0	0.6088	1	17529	17529		37.159	2.9866	1	1182700	+		9371	16674	5636	5665	9532	9532					0.10115227582218722
ELCLKTAR	8	Unmodified	_ELCLKTAR_					0	0	0		nc|ENSG00000136960|Q13822-3|ENPP2;ENPP2|p.F471Sfs*19|1|0.34|ENSG00000136960|chr8:119584005-119584005|A/-|frameshift_variant;ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-3|ENPP2	nc|ENSG00000136960|Q13822-3|ENPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2655944824219	2	467.262945	932.511337	4.0125	0.0018749	2.6867	0.0012554	6.6992	0.0031303	467.2641018560922	23.215	0.13685	23.215	23.126	23.263	0					6	4	2	0	0	0	0.58597	1	6942	6942		51.335	5.3835	1	93860			9372	11542	5637	5666	9533	9533					0.042381313996770587
ELCNRVAV	8	Unmodified	_ELCNRVAV_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA;REV__ENSG00000172915|ENST00000379939|NBEA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2423095703125	2	452.23947	902.464386	-0.11419	-5.1641E-05	0.13751	6.2186E-05	0.023316	1.0545E-05	452.2395368806579	19.487	0.60802	19.487	19.034	19.642	0					21	12	2	0	0	0	0.60719	1	6014	6014		47.916	8.8941	1	338840	+		9373	17409;16482	5638	5667	9534	9534					0.009252718485413425
ELDGGRRGLV	10	Unmodified	_ELDGGRRGLV_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.3001098632812	2	536.298904	1070.58326	1.0575	0.00056712	1.2884	0.00069097	2.3459	0.0012581	536.3001900206789	19.972	0.10403	19.972	19.919	20.023	0					4	2	2	0	0	0	0.46215	1	5542	5542		49.442	25.239	1	151440			9374	7233	5639	5668	9535	9535					0.050787620777555276
ELDKLRNEV	9	Unmodified	_ELDKLRNEV_					0	0	0		CLIP1|p.E1250D|1|0.32|ENSG00000130779|chr12:122279043-122279043|C/A|missense_variant	CLIP1|p.E1250D|1|0.32|ENSG00000130779|chr12:122279043-122279043|C/A|missense_variant	CLIP1|p.E1250D|1|0.32|ENSG00000130779|chr12:122279043-122279043|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.3056030273438	2	558.306395	1114.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.683	1	31.683	31.183	32.183	0								0	0	0	0.29421	1	10938	10938		36.447	0	1				9375	554	5640	5669	9536	9536					0.04552209155099263
ELDQLNAL	8	Unmodified	_ELDQLNAL_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2428283691406	2	458.242732	914.470912	-0.4391	-0.00020122	0.38151	0.00017482	-0.057594	-2.6392E-05	458.2430506607005	35.187	0.26442	35.187	35.032	35.296	0					8	5	2	0	0	0	0.35045	1	13574	13574		76.774	7.6812	1	112030	+		9376	20946	5641	5670	9537	9537					0.010254882809135779
ELDQVLER	8	Unmodified	_ELDQVLER_					0	0	0		ENST00000490362.1_1_2:217526523-217526805:+|nuORF;ENST00000436812.1_3_2:217526523-217528824:+|nuORF;ENSG00000115457|ENST00000233809|IGFBP2	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2667541503906	2	501.266739	1000.51892	-0.96981	-0.00048613	1.3616	0.00068252	0.39178	0.00019639	501.2675191618246	31.48	0.12885	31.48	31.4	31.529	0					9	5	2	0	0	0	0.38291	1	10432	10432		72.879	10.772	1	76358			9377	2909	5642	5671	9538	9538					0.01868562200957058
ELDRLVAN	8	Unmodified	_ELDRLVAN_					0	0	0			REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2558288574219	2	465.256174	928.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.878	1	23.878	23.378	24.378	0								0	0	0	1.7419	1	6967	6967		27.882	0	1		+		9378	20283	5643	5672	9539	9539					0.030685968920806772
ELDSSAGGLI	10	Unmodified	_ELDSSAGGLI_					0	0	0			REV__ENSG00000158615|ENST00000367188|PPP1R15B	REV__ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2458190917969	2	481.245472	960.476391	-1.3537	-0.00065147	1.2976	0.00062446	-0.056139	-2.7017E-05	481.24595113041937	21.23	0.3343	21.23	21.157	21.491	0					13	10	2	0	0	0	0.16018	1	6048	6048		84.916	33.723	1	155140	+		9379	15687	5644	5673	9540	9540					-0.005428329272717747
ELDTATWNAVL	11	Unmodified	_ELDTATWNAVL_					0	0	0		ENST00000461134.1_1_20:43115184-43118179:+|nuORF;ENSG00000124120|ENST00000262605|TTPAL	ENST00000461134.1_1_20:43115184-43118179:+|nuORF	ENST00000461134.1_1_20:43115184-43118179:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.54315185546875	3	411.543432	1231.60847	0.8863	0.00036475	-1.6304	-0.00067097	-0.74407	-0.00030622	411.54290693672	26.193	0.21348	26.193	26.085	26.298	0					9	4	3	0	0	0	0.67983	1	9237	9237		29.551	5.3189	1	486250			9380	3344	5645	5674	9541	9541					0.0019277208964467718
ELDVTLGQK	9	Unmodified	_ELDVTLGQK_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.77703857421875	2	501.776939	1001.53933	0.47195	0.00023681	-0.34823	-0.00017473	0.12372	6.2079E-05	501.77690703977254	16.753	0.11722	16.753	16.69	16.808	0					8	4	3	0	0	0	0.30951	1	3881	3881		49.442	1.7842	1	154270	+		9381	15351	5646	5675	9542	9542					0.03861732860787015
ELEAVCLGPAG	11	Unmodified	_ELEAVCLGPAG_					0	0	0			REV__nc|ENSG00000139364|Q14DG7|TMEM132B	REV__nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.765380859375	2	529.762975	1057.5114	0.034314	1.8178E-05	4.067	0.0021546	4.1013	0.0021727	529.7654364594691	16.071	0.092937	16.071	16.011	16.104	0					5	3	2	0	0	0	0.69733	1	3781	3781		27.882	4.8398	1	113560	+		9382	15026	5647	5676	9543	9543					-0.01505913390974456
ELEEATKNLQK	11	Unmodified	_ELEEATKNLQK_					0	0	0		LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant;LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant;LUZP1|p.F744Lfs*22|1|0.36|ENSG00000169641|chr1:23092030-23092030|A/-|frameshift_variant;LUZP1|p.T938Nfs*5|1|0.29|ENSG00000169641|chr1:23091451-23091452|-/G|frameshift_variant;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant	LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	651.8486328125	2	651.848624	1301.6827	0.15246	9.9378E-05	-0.08106	-5.2839E-05	0.071396	4.6539E-05	651.8484978422983	31.368	0.28936	31.368	31.242	31.531	0					20	7	4	0	0	0	0.11858	1	11399	11399		85.161	6.897	1	1245400			9383	6173	5648	5677	9544	9544					0.04392115181190093
ELEFAKSTM	9	Unmodified	_ELEFAKSTM_					0	0	0		nc|ENSG00000089639|Q9P107-2|GMIP;ENSG00000089639|ENST00000203556|GMIP	nc|ENSG00000089639|Q9P107-2|GMIP	nc|ENSG00000089639|Q9P107-2|GMIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2571411132812	2	528.257525	1054.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.141	1	11.141	10.641	11.641	0								0	0	0	0.32356	1	2216	2216		30.504	0	1				9384	1818	5649	5678	9545	9545					-0.024573157652639566
ELEGHLVGPK	10	Unmodified	_ELEGHLVGPK_					0	0	0			REV__nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	REV__nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7987670898438	2	539.798206	1077.58186	1.9603	0.0010582	-0.669	-0.00036113	1.2913	0.00069704	539.7978069134128	35.924	0.44189	35.924	35.706	36.148	0					30	13	3	0	0	0	0.32758	1	13921	13921		64.207	9.431	1	1014600	+		9385	21157	5650	5679	9546	9546					0.0461712798901317
ELEKEQLKI	9	Unmodified	_ELEKEQLKI_					0	0	0		STAMBP|p.R178Q|1|0.37|ENSG00000124356|chr2:73847544-73847544|G/A|missense_variant	STAMBP|p.R178Q|1|0.37|ENSG00000124356|chr2:73847544-73847544|G/A|missense_variant	STAMBP|p.R178Q|1|0.37|ENSG00000124356|chr2:73847544-73847544|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.22015380859375	3	377.22029	1128.63904	0.029713	1.1208E-05	-0.62019	-0.00023395	-0.59048	-0.00022274	377.2201469547049	26.325	0.20554	26.325	26.243	26.448	0					13	6	3	0	0	0	0.46194	1	7980	7980		36.318	2.2311	1	371730			9386	22494	5651	5680	9547	9547					0.07986550474697651
ELEKKNAE	8	Unmodified	_ELEKKNAE_					0	0	0			REV__ENST00000509378.1_1_4:165110937-165111516:+|nuORF	REV__ENST00000509378.1_1_4:165110937-165111516:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7545471191406	2	480.753464	959.492375	0.92486	0.00044463	0.99336	0.00047756	1.9182	0.00092219	480.7535976559397	39.705	0.19398	39.705	39.602	39.796	0					7	4	2	0	0	0	0.32815	1	15698	15698		79.451	0	1	116560	+		9387	19859	5652	5681	9548	9548					0.011008733096218748
ELEKQEKLL	9	Unmodified	_ELEKQEKLL_					0	0	0			REV__ENSG00000135205|ENST00000285871|CCDC146	REV__ENSG00000135205|ENST00000285871|CCDC146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.2203369140625	3	377.22029	1128.63904	0.24913	9.3977E-05	-0.37452	-0.00014128	-0.12539	-4.7301E-05	377.2202378108559	26.532	0.40642	26.532	26.44	26.847	0					30	9	5	0	0	0	0.13267	1	9168	9168		68.846	0	1	4050300	+		9388	14786	5653	5682	9549	9549					0.07986550474720389
ELEKQEKLL	9	Unmodified	_ELEKQEKLL_					0	0	0			REV__ENSG00000135205|ENST00000285871|CCDC146	REV__ENSG00000135205|ENST00000285871|CCDC146	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.22021484375	3	377.22029	1128.63904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.395	1	26.395	25.895	26.895	0								0	0	0	0.28666	1	8492	8492		37.508	1.0614	1		+		9389	14786	5653	5682	9550	9550					0.07986550474720389
ELEMQQDEENL	11	Unmodified	_ELEMQQDEENL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	689.2927856445312	2	689.295564	1376.57658	-3.5231	-0.0024285	-0.62676	-0.00043202	-4.1499	-0.0028605	689.2951729716282	21.587	0.41908	21.587	21.37	21.789	0					19	8	3	0	0	0	0.42746	1	7107	7107		49.536	49.536	1	948930			9390	4670	5654	5683	9551	9551					-0.09665008446427237
ELERLRSK	8	Unmodified	_ELERLRSK_					0	0	0		KTN1|p.E1195K|1|0.21|ENSG00000126777|chr14:55672681-55672681|G/A|missense_variant	KTN1|p.E1195K|1|0.21|ENSG00000126777|chr14:55672681-55672681|G/A|missense_variant	KTN1|p.E1195K|1|0.21|ENSG00000126777|chr14:55672681-55672681|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8040771484375	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.164	1	12.164	11.664	12.664	0								0	0	0	1.7419	1	2526	2526		24.519	0	1				9391	11269	5655	5684	9552	9552					0.07947950083143951
ELERRNMHR	9	Unmodified	_ELERRNMHR_					0	0	0			REV__KIF13A|p.P14H|1|0.38|ENSG00000137177|chr6:17987423-17987423|G/T|missense_variant	REV__KIF13A|p.P14H|1|0.38|ENSG00000137177|chr6:17987423-17987423|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	620.8187255859375	2	620.820012	1239.62547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.909	1	13.909	13.409	14.409	0								0	0	0	0.3804	1	2791	2791		10.265	0	1		+		9392	20784	5656	5685	9553	9553					0.015244142144865691
ELESEPVI	8	Unmodified	_ELESEPVI_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-2|STON1	nc|ENSG00000243244|Q9Y6Q2-2|STON1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.73944091796875	2	458.237116	914.459678	-0.97724	-0.00044781	2.6499	0.0012143	1.6727	0.00076649	458.2379836178345	29.585	0.22344	29.585	29.457	29.68	0					17	8	3	0	0	0	0.64096	1	9643	9643		42.474	3.6683	1	149680			9393	1425	5657	5686	9554	9554					-0.0009733381323258072
ELETLRFG	8	Unmodified	_ELETLRFG_					0	0	0		nc|ENSG00000088876|Q6P1L6-2|ZNF343;ENSG00000088876|ENST00000278772|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7586669921875	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.979	1	32.979	32.479	33.479	0								0	0	0	1.7419	1	12156	12156		38.806	8.3025	1				9394	1786	5658	5687	9555	9555					0.019334810348709652
ELETPPKP	8	Unmodified	_ELETPPKP_					0	0	0			REV__PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant	REV__PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.74761962890625	2	455.74765	909.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.43	1	22.43	21.93	22.93	0								0	0	0	1.7419	1	7285	7285		24.203	0	1		+		9395	13741	5659	5688	9556	9556					0.022386762862993237
ELETVVVTGK	10	Unmodified	_ELETVVVTGK_					0	0	0		ZBTB11|p.E991K|1|0.05|ENSG00000066422|chr3:101651357-101651357|C/T|missense_variant	ZBTB11|p.E991K|1|0.05|ENSG00000066422|chr3:101651357-101651357|C/T|missense_variant	ZBTB11|p.E991K|1|0.05|ENSG00000066422|chr3:101651357-101651357|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8065795898438	2	537.805697	1073.59684	0.69536	0.00037397	1.1129	0.0005985	1.8082	0.00097247	537.8061575165219	19.103	0.21543	19.103	18.997	19.212	0					9	4	3	0	0	0	0.2538	1	5857	5857		72.879	21.687	1	1011500			9396	23124	5660	5689	9557	9557					0.06298575066330159
ELEVGAGVHR	10	Unmodified	_ELEVGAGVHR_					0	0	0		ENST00000597275.5_1_X:48911128-48919505:+|nuORF	ENST00000597275.5_1_X:48911128-48919505:+|nuORF	ENST00000597275.5_1_X:48911128-48919505:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.287353515625	2	533.78563	1065.55671	-1.3146	-0.00070172	2.8109	0.0015004	1.4963	0.00079868	534.2884923361111	20.125	0.1338	20.125	20.04	20.173	0					5	3	2	0	0	0	0.47859	1	5608	5608		47.657	3.2801	1	71725			9397	11009	5661	5690	9558	9558					0.026550731864290356
ELFQLRLA	8	Unmodified	_ELFQLRLA_					0	0	0		PC|p.P492L|1|0.42|ENSG00000173599|chr11:66853277-66853277|G/A|missense_variant	PC|p.P492L|1|0.42|ENSG00000173599|chr11:66853277-66853277|G/A|missense_variant	PC|p.P492L|1|0.42|ENSG00000173599|chr11:66853277-66853277|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2943420410156	2	495.292559	988.570566	-0.040357	-1.9989E-05	3.5312	0.001749	3.4909	0.001729	495.29421753264216	25.943	0.11555	25.943	25.885	26	0					4	2	2	0	0	0	0.46905	1	9240	9240		63.306	3.188	1	246080			9398	11900	5662	5691	9559	9559					0.0758235068550448
ELFVQLVR	8	Unmodified	_ELFVQLVR_					0	0	0			REV__ENST00000376687.3_1_X:48555153-48557380:+|nuORF	REV__ENST00000376687.3_1_X:48555153-48557380:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.302001953125	2	502.300384	1002.58622	0.50012	0.00025121	2.9623	0.001488	3.4624	0.0017392	502.301698867213	23.98	0.14045	23.98	23.895	24.036	0					6	4	2	0	0	0	0.64096	1	7026	7026		42.474	1.6963	1	72621	+		9399	18721	5663	5692	9560	9560					0.08502637202582264
ELGAEEENEG	10	Unmodified	_ELGAEEENEG_					0	0	0			REV__ENST00000421722.5_1_2:190656520-190720594:+|nuORF	REV__ENST00000421722.5_1_2:190656520-190720594:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7234497070312	2	538.722558	1075.43056	0.29981	0.00016151	1.5976	0.00086065	1.8974	0.0010222	538.7233659102919	18.553	0.62284	18.553	18.122	18.745	0					19	12	2	0	0	0	0.46215	1	5622	5622		49.442	3.4693	1	1194500	+		9400	13110	5664	5693	9561	9561					-0.10413522900171301
ELGAVNPNAM	10	Unmodified	_ELGAVNPNAM_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2472839355469	2	508.247492	1014.48043	-0.58457	-0.00029711	2.091	0.0010627	1.5064	0.00076563	508.249031503187	24.669	0.31956	24.669	24.526	24.846	0					13	11	2	0	0	0	0.28723	1	7582	7582		68.787	15.435	1	81800	+		9401	14494	5665	5694	9562	9562					-0.026230667052118406
ELGDLGEVLR	10	Unmodified	_ELGDLGEVLR_					0	0	0		ENST00000597025.1_1_19:15567220-15568129:-|nuORF	ENST00000597025.1_1_19:15567220-15568129:-|nuORF	ENST00000597025.1_1_19:15567220-15568129:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8004760742188	2	550.800946	1099.58734	1.2875	0.00070916	-1.1696	-0.00064423	0.11788	6.493E-05	550.8004837928493	26.94	0.11065	26.94	26.901	27.012	0					5	3	2	0	0	0	0.26198	1	8253	8253		71.877	6.7202	1	75754			9402	11008	5666	5695	9563	9563					0.041528067808030755
ELGFGGLGGAI	11	Unmodified	_ELGFGGLGGAI_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7666320800781	2	495.766374	989.518196	0.73466	0.00036422	-0.6511	-0.00032279	0.083561	4.1427E-05	495.765941386567	41.227	0.18992	41.227	41.187	41.377	0					17	9	2	0	0	0	0.3828	1	15678	15678		53.351	3.8154	1	98256	+		9403	16331	5667	5696	9564	9564					0.023017675519099612
ELGFQDSK	8	Unmodified	_ELGFQDSK_					0	0	0		ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2276916503906	2	462.227082	922.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.544	1	20.544	20.044	21.044	0								0	0	0	1.7419	1	5754	5754		23.042	0	1				9404	6162	5668	5697	9565	9565					-0.024710847531878244
ELGGPPLLHG	10	Unmodified	_ELGGPPLLHG_					0	0	0		ENST00000332674.9_2_10:111967418-111987950:+|nuORF	ENST00000332674.9_2_10:111967418-111987950:+|nuORF	ENST00000332674.9_2_10:111967418-111987950:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2728271484375	2	495.274367	988.53418	-0.40849	-0.00020232	-2.603	-0.0012892	-3.0114	-0.0014915	495.2726710748443	33.256	0.19869	33.256	33.141	33.339	0					8	5	2	0	0	0	0.47621	1	12307	12307		47.916	5.5195	1	254060			9405	8679	5669	5698	9566	9566					0.03945473788803611
ELGGTPDLR	9	Unmodified	_ELGGTPDLR_					0	0	0			REV__ENST00000229281.5_1_12:7053259-7053325:+|nuORF	REV__ENST00000229281.5_1_12:7053259-7053325:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2538757324219	2	479.253631	956.49271	0.46201	0.00022142	-0.13622	-6.5284E-05	0.32579	0.00015613	479.25338436061253	27.667	0.51696	27.667	27.378	27.895	0					21	12	2	0	0	0	0.41113	1	9705	9705		40.778	1.5253	1	268540	+		9406	17909	5670	5699	9567	9567					0.012722930294899015
ELGHHPRIG	9	Unmodified	_ELGHHPRIG_					0	0	0			REV__SRRM1|p.P620Lfs*114|1|0.34|ENSG00000133226|chr1:24669238-24669238|C/-|frameshift_variant	REV__SRRM1|p.P620Lfs*114|1|0.34|ENSG00000133226|chr1:24669238-24669238|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.27734375	2	508.275232	1014.53591	1.1451	0.00058204	2.4269	0.0012335	3.572	0.0018156	508.276788428179	38.462	0.43467	38.462	38.305	38.739	0					63	15	5	0	0	0	0.43426	1	15155	15155		38.806	3.1879	1	1511000	+		9407	21604	5671	5700	9568	9568					0.029225275974113174
ELGHTPPGP	9	Unmodified	_ELGHTPPGP_					0	0	0		ENST00000369485.8_1_6:89321642-89321729:-|nuORF	ENST00000369485.8_1_6:89321642-89321729:-|nuORF	ENST00000369485.8_1_6:89321642-89321729:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7293701171875	2	452.729792	903.445031	0.67948	0.00030762	-1.7736	-0.00080298	-1.0942	-0.00049536	452.72912273824636	27.857	0.75642	27.857	27.623	28.38	0					25	18	2	0	0	0	0.5654	1	9786	9786		25.45	1.2474	1	124110			9408	8943	5672	5701	9569	9569					-0.010553611707109667
ELGLAKEAI	9	Unmodified	_ELGLAKEAI_					0	0	0		ENST00000294811.2_1_1:209956812-209957735:-|nuORF	ENST00000294811.2_1_1:209956812-209957735:-|nuORF	ENST00000294811.2_1_1:209956812-209957735:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2761535644531	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.925	1	31.925	31.425	32.425	0								0	0	0	0.22075	1	10618	10618		47.96	0.30219	1				9409	8446	5673	5702	9570	9570					0.06502938211713172
ELGPDGGGAA	10	Unmodified	_ELGPDGGGAA_					0	0	0			REV__ENST00000523094.5_2_5:157285974-157286100:-|nuORF	REV__ENST00000523094.5_2_5:157285974-157286100:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.1953125	2	422.195782	842.377011	-0.87756	-0.0003705	-2.403	-0.0010145	-3.2805	-0.001385	422.1958912092714	43.023	1.0748	43.023	42.553	43.628	0					157	58	4	0	0	0	0.7005	1	16367	16367		21.96	2.8564	1	1146500	+		9410	19968	5674	5703	9571	9571					-0.05048230821364541
ELGQLLLCL	9	Unmodified	_ELGQLLLCL_					0	0	0			REV__ENST00000553027.1_1_12:49318004-49318058:-|nuORF	REV__ENST00000553027.1_1_12:49318004-49318058:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.29046630859375	2	501.288628	1000.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.159	1	56.159	55.659	56.659	0								0	0	0	0.35377	1	16288	16288		24.203	0	1		+		9411	20214	5675	5704	9572	9572					0.06244455373735036
ELGRVHRP	8	Unmodified	_ELGRVHRP_					0	0	0		ENST00000272233.5_1_2:20646849-20646981:+|nuORF	ENST00000272233.5_1_2:20646849-20646981:+|nuORF	ENST00000272233.5_1_2:20646849-20646981:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2768249511719	2	482.277775	962.540997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.652	1	11.652	11.152	12.152	0								0	0	0	1.7419	1	2439	2439		12.207	3.3845	1				9412	8384	5676	5705	9573	9573					0.058228314600341946
ELHKLRKG	8	Unmodified	_ELHKLRKG_					0	0	0			REV__MCM3AP|p.E1948K|1|0.25|ENSG00000160294|chr21:46235369-46235369|C/T|missense_variant	REV__MCM3AP|p.E1948K|1|0.25|ENSG00000160294|chr21:46235369-46235369|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.5382995605469	3	327.538176	979.592698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.51	1	17.51	17.01	18.01	0								0	0	0	1.7419	1	4379	4379		16.473	0	1		+		9413	20871	5677	5706	9574	9574					0.10208575153944821
ELHRTVQK	8	Unmodified	_ELHRTVQK_					0	0	0		nc|ENSG00000119397|Q7Z7A1-3|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant	nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-3|CNTRL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	337.5298767089844	3	337.529569	1009.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.875	1	12.875	12.375	13.375	0								0	0	0	1.7419	1	2532	2532		25.574	0	1				9414	3109	5678	5707	9575	9575					0.0624768091166743
ELIIISQTKQ	10	Unmodified	_ELIIISQTKQ_					0	0	0			REV__SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant	REV__SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.8489990234375	2	586.847896	1171.68124	1.4289	0.00083855	0.52554	0.00030841	1.9545	0.001147	586.84850105669	31.097	0.46301	31.097	30.935	31.398	0					21	10	3	0	0	0	0.59277	1	11702	11702		35.152	3.5178	1	420880	+		9415	13851	5679	5708	9576	9576					0.10226525883081194
ELIQPGAVKV	10	Unmodified	_ELIQPGAVKV_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000599899.5_1_19:6677895-6682275:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.3179321289062	2	527.318774	1052.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.974	1	41.974	41.474	42.474	0								0	0	0	0.37129	1	16493	16493		39.253	2.8061	1				9416	3430	5680	5709	9577	9577					0.09878889028482263
ELIQTESAI	9	Unmodified	_ELIQTESAI_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2687072753906	2	502.268947	1002.52334	-0.044834	-2.2519E-05	-0.43	-0.00021598	-0.47484	-0.0002385	502.26871696068804	29.228	0.24695	29.228	29.116	29.363	0					20	9	3	0	0	0	0.27249	1	9208	9208		52.937	1.6012	1	199500	+		9417	18933	5681	5710	9578	9578					0.02218026623870628
ELITGRDLQ	9	Unmodified	_ELITGRDLQ_					0	0	0		ENST00000554737.2_1_14:73524881-73525067:-|nuORF	ENST00000554737.2_1_14:73524881-73525067:-|nuORF	ENST00000554737.2_1_14:73524881-73525067:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7879638671875	2	522.787838	1043.56112	1.6516	0.00086343	0.80582	0.00042127	2.4574	0.0012847	522.7882154782259	19.444	0.36774	19.444	19.124	19.492	0					9	8	2	0	0	0	0.13267	1	5883	5883		71.877	0.58177	1	297690			9418	10650	5682	5711	9579	9579					0.04108537609340601
ELKALVAE	8	Unmodified	_ELKALVAE_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-4|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF;CCDC14|p.E558Vfs*7|1|0.04|ENSG00000175455|chr3:123931228-123931229|-/TTGAATAA|frameshift_variant;CCDC14|p.E558Rfs*13|1|0.03|ENSG00000175455|chr3:123931229-123931230|-/T|frameshift_variant;CCDC14|p.V615Afs*13|1|0.05|ENSG00000175455|chr3:123915674-123915675|-/TAATGAG|frameshift_variant;ENST00000485949.5_1_3:123652514-123665686:-|nuORF	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7581481933594	2	436.758018	871.501483	0.63781	0.00027857	-1.1819	-0.00051621	-0.5441	-0.00023764	436.75756531148534	29.815	0.49825	29.815	29.485	29.983	0					16	12	2	0	0	0	0.32597	1	10571	10571		79.713	2.395	1	792300			9419	6558	5683	5712	9580	9580					0.0605926666595451
ELKARISASA	10	Unmodified	_ELKARISASA_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3045043945312	2	523.303655	1044.59276	1.7929	0.00093825	-0.44109	-0.00023082	1.3518	0.00070742	523.3033414963174	50.387	1.1313	50.387	50.125	51.256	0					104	69	2	0	0	0	0.68774	1	18995	18995		23.523	4.4192	1	129440			9420	2617	5684	5713	9581	9581					0.07224530363282611
ELKDRLQY	8	Unmodified	_ELKDRLQY_					0	0	0		nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7913818359375	2	532.790381	1063.56621	-0.33894	-0.00018059	1.2932	0.000689	0.95425	0.00050841	532.7911318029958	31.794	0.25694	31.794	31.708	31.965	0					17	10	2	0	0	0	0.46905	1	10557	10557		63.306	4.5243	1	207510			9421	11449	5685	5714	9582	9582					0.03696841471969492
ELKDRLQY	8	Unmodified	_ELKDRLQY_					0	0	0		nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.790771484375	2	532.790381	1063.56621	1.7194	0.00091608	-1.2239	-0.00065207	0.49552	0.00026401	532.7898899779977	31.996	0.34748	31.996	31.894	32.242	0					15	7	3	0	0	0	0.5535	1	12127	12127		54.776	8.8041	1	908960			9422	11449	5685	5714	9583	9583					0.03696841471969492
ELKDRLQY	8	Unmodified	_ELKDRLQY_					0	0	0		nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.79052734375	2	532.790381	1063.56621	-1.28	-0.00068197	1.9071	0.0010161	0.62711	0.00033412	532.7915218137151	31.775	0.26401	31.775	31.694	31.958	0					12	8	2	0	0	0	0.3961	1	10984	10984		71.296	4.8664	1	169240			9423	11449	5685	5714	9584	9584					0.03696841471969492
ELKEGAQALL	10	Unmodified	_ELKEGAQALL_					0	0	0			REV__ARSJ|p.N431Kfs*53|1|0.24|ENSG00000180801|chr4:113902781-113902782|-/T|frameshift_variant;REV__ARSJ|p.F197Lfs*54|1|0.26|ENSG00000180801|chr4:113903483-113903483|A/-|frameshift_variant	REV__ARSJ|p.F197Lfs*54|1|0.26|ENSG00000180801|chr4:113903483-113903483|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3060913085938	2	536.305864	1070.59717	1.927	0.0010335	-0.86825	-0.00046565	1.0587	0.00056781	536.3053812171133	32.514	0.37082	32.514	32.253	32.623	0					14	7	4	0	0	0	0.049666	1	12255	12255		109.44	2.7557	1	2576000	+		9424	12229;12228	5686	5715	9585	9585					0.06469994786198185
ELKEGNNVL	9	Unmodified	_ELKEGNNVL_					0	0	0			REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2744140625	2	508.274564	1014.53457	-0.097864	-4.9742E-05	0.31386	0.00015953	0.216	0.00010979	508.27462975725155	33.955	0.30963	33.955	33.85	34.16	0					27	13	3	0	0	0	0.24334	1	11079	11079		56.434	3.3448	1	265470	+		9425	17210	5687	5716	9586	9586					0.027888487180121047
ELKELLQKE	9	Unmodified	_ELKELLQKE_					0	0	0		ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3300170898438	2	565.326796	1128.63904	-0.34578	-0.00019548	1.2179	0.00068851	0.87212	0.00049304	565.3277396213413	26.308	0.34675	26.308	26.227	26.574	0					23	11	4	0	0	0	0.24334	1	8342	8342		56.434	0	1	507570			9426	7229	5688	5717	9587	9587					0.07986550474720389
ELKHWATF	8	Unmodified	_ELKHWATF_					0	0	0		nc|ENSG00000162139|Q9UQ49|NEU3;ENSG00000162139|ENST00000294064|NEU3	nc|ENSG00000162139|Q9UQ49|NEU3	nc|ENSG00000162139|Q9UQ49|NEU3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2691040039062	2	516.269084	1030.52362	1.4604	0.00075396	-1.3516	-0.00069777	0.10884	5.619E-05	516.2686209173761	39.476	0.42929	39.476	39.25	39.679	0					26	15	2	0	0	0	0.66372	1	15518	15518		38.806	1.647	1	118100			9427	5444	5689	5718	9588	9588					0.009574911343634085
ELKLHVKDE	9	Unmodified	_ELKLHVKDE_					0	0	0			REV__CBLN2|p.G205D|1|0.37|ENSG00000141668|chr18:72538237-72538237|C/T|missense_variant	REV__CBLN2|p.G205D|1|0.37|ENSG00000141668|chr18:72538237-72538237|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.8121948242188	2	555.811313	1109.60807	3.55	0.0019731	-1.7227	-0.0009575	1.8273	0.0010156	555.81072379865	41.875	0.10171	41.875	41.84	41.942	0					5	3	2	0	0	0	0.50858	1	16690	16690		31.53	2.3598	1	116290	+		9428	12342	5690	5719	9589	9589					0.057653971604850085
ELKQEKELL	9	Unmodified	_ELKQEKELL_					0	0	0			REV__nc|ENSG00000048052|Q9UKV0-11|HDAC9	REV__nc|ENSG00000048052|Q9UKV0-11|HDAC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.2201232910156	3	377.22029	1128.63904	0.64365	0.0002428	-1.6666	-0.00062868	-1.023	-0.00038588	377.2199467206301	26.568	1.0561	26.568	25.967	27.023	0					34	21	3	0	0	0	0.22377	1	9534	9534		65.465	8.7443	1	1749200	+		9429	13019	5691	5720	9590	9590					0.07986550474720389
ELKRRVQPS	9	Unmodified	_ELKRRVQPS_					0	0	0			REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.8309936523438	2	556.830372	1111.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.296	1	14.296	13.796	14.796	0								0	0	0	0.36609	1	3002	3002		20.947	0	1		+		9430	17718	5692	5721	9591	9591					0.09483327865814317
ELKSVARSLE	10	Unmodified	_ELKSVARSLE_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.3231201171875	2	566.322045	1130.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.721	1	18.721	18.221	19.221	0								0	0	0	0.3598	1	4941	4941		41.427	7.2541	1		+		9431	21091	5693	5722	9592	9592					0.06944782189179932
ELKSVARSLE	10	Unmodified	_ELKSVARSLE_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3226928710938	2	566.322045	1130.62954	3.4707	0.0019656	-1.7466	-0.00098913	1.7242	0.00097643	566.3212931188228	18.922	0.41098	18.922	18.818	19.229	0					13	8	3	0	0	0	0.46128	1	5770	5770		49.536	4.5138	1	483980	+		9432	21091	5693	5722	9593	9593					0.06944782189179932
ELKYDKQIDL	10	Unmodified	_ELKYDKQIDL_					0	0	0		ENST00000482262.1_1_3:51425158-51426517:+|nuORF;ENST00000446668.5_1_3:51424348-51426517:+|nuORF;MANF|p.E149Rfs*16|1|0.3|ENSG00000145050|chr3:51388980-51388980|G/-|frameshift_variant;ENST00000470900.1_1_3:51423580-51426517:+|nuORF;ENSG00000145050|ENST00000528157|MANF	ENST00000482262.1_1_3:51425158-51426517:+|nuORF	ENST00000482262.1_1_3:51425158-51426517:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2308044433594	3	422.230966	1263.67107	1.054	0.00044504	-1.8478	-0.00078021	-0.7938	-0.00033517	422.23000329973155	24.813	0.80089	24.813	24.463	25.264	0					31	16	3	0	0	0	0.13022	1	8619	8619		90.149	14.497	1	3848900			9433	4653	5694	5723	9594	9594					0.04977918157851491
ELLAGVAGFY	10	Unmodified	_ELLAGVAGFY_					0	0	0			REV__nc|ENSG00000125779|Q9BZ23-2|PANK2	REV__nc|ENSG00000125779|Q9BZ23-2|PANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2775268554688	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.674	1	41.674	41.174	42.174	0								0	0	0	0.33119	1	15829	15829		45.952	8.1404	1		+		9434	14440	5695	5724	9595	9595					0.020869382117098212
ELLEGLLGNIT	11	Unmodified	_ELLEGLLGNIT_					0	0	0			REV__nc|ENSG00000255221|Q5XLA6|CARD17P	REV__nc|ENSG00000255221|Q5XLA6|CARD17P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.2248229980469	3	391.223811	1170.6496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.246	1	43.246	42.746	43.746	0								0	0	0	0.45674	1	17302	17302		21.78	5.7737	1		+		9435	21234	5696	5725	9596	9596					0.07110533129139185
ELLEKHLPD	9	Unmodified	_ELLEKHLPD_					0	0	0			REV__ENSG00000174840|ENST00000311180|PDE12	REV__ENSG00000174840|ENST00000311180|PDE12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2960815429688	2	547.298039	1092.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.264	1	22.264	21.764	22.764	0								0	0	0	0.28996	1	6603	6603		37.159	0	1		+		9436	16586	5697	5726	9597	9597					0.038937082691290925
ELLESRSL	8	Unmodified	_ELLESRSL_					0	0	0			REV__ENST00000361112.6_1_17:33849919-33864693:-|nuORF	REV__ENST00000361112.6_1_17:33849919-33864693:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7634582519531	2	473.763832	945.513111	-0.58889	-0.00027899	0.069325	3.2844E-05	-0.51956	-0.00024615	473.7638788966131	30.637	0.3199	30.637	30.529	30.848	0					17	6	4	0	0	0	0.37144	1	11350	11350		74.255	2.9593	1	933380	+		9437	18564	5698	5727	9598	9598					0.03817463689279066
ELLIILMY	8	Unmodified	_ELLIILMY_					0	0	0			REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53466796875	3	336.53304	1006.57729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.745	1	23.745	23.245	24.245	0								0	0	0	1.7419	1	7176	7176		24.203	7.7296	1		+		9438	20589	5699	5728	9599	9599					0.0742652752187496
ELLIILMY	8	Unmodified	_ELLIILMY_					0	0	0			REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5341796875	3	336.53304	1006.57729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.416	1	36.416	35.916	36.916	0								0	0	0	1.7419	1	12337	12337		17.365	0.89182	1		+		9439	20589	5699	5728	9600	9600					0.0742652752187496
ELLIILMY	8	Unmodified	_ELLIILMY_					0	0	0			REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342102050781	3	336.53304	1006.57729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.989	1	34.989	34.489	35.489	0								0	0	0	1.7419	1	13527	13527		18.324	0	1		+		9440	20589	5699	5728	9601	9601					0.0742652752187496
ELLKKLNEM	9	Unmodified	_ELLKKLNEM_					0	0	0			REV__nc|ENSG00000139132|Q96M96-2|FGD4	REV__nc|ENSG00000139132|Q96M96-2|FGD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3186645507812	2	559.317917	1116.62128	0.12257	6.8557E-05	0.23471	0.00013128	0.35729	0.00019984	559.3181046905951	31.535	0.15774	31.535	31.477	31.635	0					9	6	2	0	0	0	0.46194	1	10460	10460		36.447	1.2947	1	70041	+		9441	15010	5700	5729	9602	9602					0.06763511948179257
ELLKKSEI	8	Unmodified	_ELLKKSEI_					0	0	0		tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2919921875	2	480.292225	958.569897	-1.3881	-0.0006667	0.9801	0.00047074	-0.40801	-0.00019596	480.2927509211128	25.062	0.1353	25.062	24.967	25.102	0					7	4	2	0	0	0	0.37144	1	7727	7727		74.255	4.6274	1	110750			9442	22634	5701	5730	9603	9603					0.08895511245816579
ELLLFLMD	8	Unmodified	_ELLLFLMD_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2709045410156	2	497.269904	992.525255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.767	1	21.767	21.267	22.267	0								0	0	0	1.7419	1	6046	6046		40.573	0	1				9443	4266	5702	5731	9604	9604					0.028693641081190435
ELLQFNINV	9	Unmodified	_ELLQFNINV_					0	0	0		ENST00000596710.1_1_19:21934351-21934702:+|nuORF;ENST00000468768.1_1_2:208615415-208618419:+|nuORF;nc|ENSG00000108100|Q8ND76-3|CCNY;nc|ENSG00000163249|Q8N7R7-3|CCNYL1;nc|ENSG00000163249|Q8N7R7-2|CCNYL1;nc|ENSG00000108100|Q8ND76-2|CCNY;ENSG00000108100|ENST00000374704|CCNY;ENSG00000163249|ENST00000295414|CCNYL1	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3009033203125	2	545.300581	1088.58661	1.9225	0.0010484	-1.0597	-0.00057785	0.86286	0.00047052	545.2999612408602	33.526	0.43098	33.526	33.259	33.69	0					26	10	3	0	0	0	0.35045	1	12831	12831		45.952	1.5748	1	1266700			9444	2515	5703	5732	9605	9605					0.0458601213174461
ELLSKKKIP	9	Unmodified	_ELLSKKKIP_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	352.5655212402344	3	352.56562	1054.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.087	1	19.087	18.587	19.587	0								0	0	0	0.3245	1	4871	4871		30.318	6.795	1				9445	6963	5704	5733	9606	9606					0.14988052442231492
ELLTFEFPS	9	Unmodified	_ELLTFEFPS_					0	0	0			REV__ENST00000487416.6_1_19:16756829-16756907:-|nuORF	REV__ENST00000487416.6_1_19:16756829-16756907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.5185546875	3	361.518336	1081.53318	0.73135	0.0002644	0.48442	0.00017513	1.2158	0.00043952	361.5184814907177	37.426	0.32147	37.426	37.358	37.68	0					13	9	2	0	0	0	0.61124	1	14198	14198		12.812	0	1	97574	+		9446	19678	5705	5734	9607	9607					-0.004327853707536633
ELLTLQRAI	9	Unmodified	_ELLTLQRAI_					0	0	0			REV__SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant	REV__SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.8243408203125	2	528.824224	1055.63389	0.28586	0.00015117	0.097856	5.1749E-05	0.38371	0.00020292	528.8242396629249	34.956	0.22142	34.956	34.881	35.102	0					13	6	3	0	0	0	0.39215	1	13516	13516		42.396	4.5846	1	239570	+		9447	13559	5706	5735	9608	9608					0.10830291402771763
ELLVGDGG	8	Unmodified	_ELLVGDGG_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.86572265625	2	380.197793	758.381034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.628	1	22.628	22.128	23.128	0								0	0	0	1.7419	1	7554	7554		50.025	11.218	1				9448	321	5707	5736	9609	9609					-0.007821413276474232
ELMFRIRT	8	Oxidation (M)	_ELM(Oxidation (M))FRIRT_		ELM(1)FRIRT		ELM(69)FRIRT	0	0	1			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2930297851562	2	541.294776	1080.575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.859	1	35.859	35.359	36.359	0								0	0	0	1.7419	1	13480	13480		68.787	10.557	1		+		9449	15324	5708	5737	9610	9610		589			0.03793491836790963
ELMRAPAPR	9	Unmodified	_ELMRAPAPR_					0	0	0			REV__ENST00000330115.3_1_3:194349151-194354396:-|nuORF	REV__ENST00000330115.3_1_3:194349151-194354396:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7850952148438	2	520.787118	1039.55968	-1.3422	-0.000699	-1.4161	-0.00073751	-2.7583	-0.0014365	520.7863328611196	24.507	0.13935	24.507	24.455	24.594	0					5	3	2	0	0	0	0.35045	1	7655	7655		45.952	1.8352	1	58553	+		9450	18376	5709	5738	9611	9611					0.04148625039579201
ELMTLMVY	8	Oxidation (M)	_ELM(Oxidation (M))TLMVY_		ELM(0.5)TLM(0.5)VY		ELM(0)TLM(0)VY	0	0	1		nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.24560546875	2	508.245572	1014.47659	1.3104	0.000666	-0.54427	-0.00027662	0.76611	0.00038937	508.2452110114183	25.457	0.55118	25.457	25.347	25.898	0					14	9	2	0	0	0	0.4723	1	8930	8930		62.978	18.862	2	595590			9451	11653	5710	5739	9612	9612		455;456			-0.0300687252328089
ELNAVQSLLG	10	Unmodified	_ELNAVQSLLG_					0	0	0		ENST00000373473.5_1_20:36374873-36393614:+|nuORF;ENST00000373465.2_1_X:46278845-46279157:-|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.29052734375	2	522.290214	1042.56587	1.061	0.00055416	-0.78676	-0.00041092	0.27426	0.00014324	522.2901013592001	28.441	0.1675	28.441	28.331	28.499	0					5	3	2	0	0	0	0.59277	1	10433	10433		35.152	5.982	1	100590			9452	3817	5711	5740	9613	9613					0.04629421752088092
ELNHYSLE	8	Unmodified	_ELNHYSLE_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L;REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2390441894531	2	502.737814	1003.46108	-0.049797	-2.5035E-05	0.45071	0.00022659	0.40091	0.00020155	503.2393714496517	30.037	0.1353	30.037	29.974	30.109	0					9	5	3	0	0	0	0.76187	1	9530	9530		25.574	0	1	96927	+		9453	17233;15117	5712	5741	9614	9614					-0.040516997244708364
ELNKRMEQN	9	Oxidation (M)	_ELNKRM(Oxidation (M))EQN_		ELNKRM(1)EQN		ELNKRM(53)EQN	0	0	1			REV__CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant	REV__CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.268310546875	2	589.285137	1176.55572	0.17802	0.0001049	0.050732	2.9895E-05	0.22875	0.0001348	589.2851243810371	18.033	0.10723	18.033	17.975	18.082	0					4	2	2	0	0	0	0.27249	1	5191	5191		52.937	6.4799	1	259960	+		9454	12429	5713	5742	9615	9615		481			-0.02549509244795445
ELNYGLAQF	9	Unmodified	_ELNYGLAQF_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;ENST00000470832.1_1_X:70463642-70464308:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7637329101562	2	527.763832	1053.51311	0.55261	0.00029165	0.071667	3.7823E-05	0.62428	0.00032947	527.7637667522582	38.702	0.28759	38.702	38.627	38.914	0					27	16	3	0	0	0	0.33044	1	12598	12598		47.657	1.6851	1	239980			9455	4766	5714	5743	9616	9616					-0.011505363107289668
ELPFCQPK	8	Unmodified	_ELPFCQPK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.24505615234375	2	481.244221	960.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.889	1	24.889	24.389	25.389	0								0	0	0	1.7419	1	8765	8765		47.916	7.1374	1				9456	5817	5715	5744	9617	9617					-0.007929598659302428
ELPFRPSACF	10	Unmodified	_ELPFRPSACF_					0	0	0		ENST00000265077.7_1_5:82767309-82767426:+|nuORF	ENST00000265077.7_1_5:82767309-82767426:+|nuORF	ENST00000265077.7_1_5:82767309-82767426:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.78857421875	2	583.786784	1165.55902	3.2213	0.0018806	-0.31885	-0.00018614	2.9025	0.0016944	583.7868647328746	32.346	0.26899	32.346	32.186	32.455	0					19	5	4	0	0	0	0.58189	1	12174	12174		36.447	4.9169	1	1260400			9457	8345	5716	5745	9618	9618					-0.01714214400135461
ELPLPDQQP	9	Unmodified	_ELPLPDQQP_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.K121Nfs*2|1|0.14|ENSG00000273749|chr15:22944582-22944582|T/-|frameshift_variant;CYFIP2|p.Q484Rfs*7|1|0.08|ENSG00000055163|chr5:157319855-157319856|-/GA|frameshift_variant;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7691650390625	2	518.769114	1035.52368	-1.3907	-0.00072144	1.3985	0.00072552	0.0078765	4.0861E-06	518.7700493994683	32.724	0.12174	32.724	32.683	32.805	0					5	3	2	0	0	0	0.28897	1	11433	11433		51.193	6.8155	1	71278			9458	8095;1279	5717	5746	9619	9619					0.007334463437246086
ELPNYINR	8	Unmodified	_ELPNYINR_					0	0	0			REV__TENM3|p.P1918L|1|0.46|ENSG00000218336|chr4:182792425-182792425|C/T|missense_variant	REV__TENM3|p.P1918L|1|0.46|ENSG00000218336|chr4:182792425-182792425|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.18194580078125	3	340.182058	1017.52434	0.51114	0.00017388	-0.44255	-0.00015055	0.068589	2.3333E-05	340.18182045195647	26.572	0.18991	26.572	26.481	26.671	0					9	4	3	0	0	0	0.68754	1	9198	9198		37.159	0	1	366360	+		9459	21631	5718	5747	9620	9620					0.01628285783431238
ELPPNINIK	9	Unmodified	_ELPPNINIK_					0	0	0		ENST00000507395.1_1_5:174919106-174919271:+|nuORF;ENST00000513725.1_1_5:174919106-174937211:+|nuORF;ENSG00000164466|ENST00000321442|SFXN1	ENST00000507395.1_1_5:174919106-174919271:+|nuORF	ENST00000507395.1_1_5:174919106-174919271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3106079101562	2	519.303124	1036.5917	1.6293	0.00084609	0.28278	0.00014685	1.9121	0.00099294	519.3028168870666	37.961	0.44556	37.961	37.81	38.255	0					34	15	3	0	0	0	0.47473	1	14845	14845		27.882	1.1893	1	606980			9460	5694	5719	5748	9621	9621					0.07486315994356119
ELPRLAEF	8	Unmodified	_ELPRLAEF_					0	0	0			REV__DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	REV__DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2703552246094	2	487.768917	973.523281	-1.2475	-0.00060851	1.3643	0.00066544	0.11671	5.693E-05	487.7693789458953	33.043	0.27181	33.043	32.878	33.15	0					24	11	4	0	0	0	0.7126	1	11092	11092		29.842	9.3597	1	155340	+		9461	12753	5720	5749	9622	9622					0.03546071414518792
ELPRPLLQQ	9	Unmodified	_ELPRPLLQQ_					0	0	0		ENST00000506637.2_1_4:81308203-81308479:-|nuORF	ENST00000506637.2_1_4:81308203-81308479:-|nuORF	ENST00000506637.2_1_4:81308203-81308479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.21697998046875	3	365.216991	1092.62914	0.83803	0.00030606	-1.1146	-0.00040705	-0.27652	-0.00010099	365.21668588200026	25.124	0.1066	25.124	25.074	25.181	0					4	2	2	0	0	0	0.53064	1	8556	8556		29.17	4.6509	1	63054			9462	10197	5721	5750	9623	9623					0.08653407259998858
ELPSPLITFT	10	Unmodified	_ELPSPLITFT_					0	0	0		ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.5437927246094	3	373.209502	1116.60668	0.84353	0.00031481	-0.20309	-7.5797E-05	0.64044	0.00023902	373.2096237524872	37.091	1.1662	37.091	36.771	37.937	0					87	36	3	0	0	0	0.7005	1	14619	14619		15.333	0	1	150180			9463	8102	5722	5751	9624	9624					0.053037630717199136
ELPTPNGTT	9	Unmodified	_ELPTPNGTT_					0	0	0		GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2330017089844	2	465.232364	928.450176	2.6134	0.0012159	-1.5485	-0.00072043	1.0649	0.00049543	465.23186351481326	46.512	0.044067	46.512	46.489	46.533	0					4	2	2	0	0	0	0.54267	1	18615	18615		27.882	1.0861	1	28287			9464	2499	5723	5752	9625	9625					-0.016911020987663505
ELQDWDGQSP	10	Unmodified	_ELQDWDGQSP_					0	0	0		ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.754638671875	2	587.754192	1173.49383	1.4428	0.00084801	-0.54434	-0.00031994	0.89846	0.00052807	587.7541874609014	37.38	0.16989	37.38	37.296	37.466	0					8	5	2	0	0	0	0.59277	1	14608	14608		35.152	4.6484	1	76808			9465	7261	5724	5753	9626	9626					-0.08597537392279264
ELQFTTMSRS	10	Unmodified	_ELQFTTMSRS_					0	0	0			REV__ENST00000428471.1_1_2:240323503-240323937:+|nuORF	REV__ENST00000428471.1_1_2:240323503-240323937:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2916870117188	2	600.289888	1198.56522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.213	1	51.213	50.713	51.713	0								0	0	0	0.4044	1	19070	19070		29.17	1.0886	1		+		9466	19136	5725	5754	9627	9627					-0.026117409592416152
ELQIEREK	8	Unmodified	_ELQIEREK_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7881469726562	2	522.787838	1043.56112	1.6639	0.00086989	-0.4166	-0.00021779	1.2473	0.00065209	522.7875303989393	31.173	0.34218	31.173	31.043	31.385	0					19	8	4	0	0	0	0.24999	1	11314	11314		101.25	0	1	443730	+		9467	12425	5726	5755	9628	9628					0.04108537609317864
ELQLVALLQ	9	Unmodified	_ELQLVALLQ_					0	0	0			REV__ENST00000442940.1_1_X:7894156-7895742:-|nuORF	REV__ENST00000442940.1_1_X:7894156-7895742:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.813720703125	2	513.813325	1025.6121	0.016879	8.6727E-06	0.17887	9.1905E-05	0.19575	0.00010058	513.8132346643805	40.561	0.12358	40.561	40.471	40.595	0					6	4	2	0	0	0	0.50858	1	15458	15458		31.53	3.6476	1	62907	+		9468	19258	5727	5756	9629	9629					0.10031486654179389
ELQQGSQAL	9	Unmodified	_ELQQGSQAL_					0	0	0			REV__ENST00000487162.1_1_22:50967153-50967951:-|nuORF	REV__ENST00000487162.1_1_22:50967153-50967951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.25103759765625	2	487.251089	972.487624	-0.056996	-2.7771E-05	-0.27329	-0.00013316	-0.33028	-0.00016093	487.25086432903373	22.311	0.41902	22.311	22.062	22.481	0					27	12	4	0	0	0	0.10915	1	6242	6242		77.318	19.506	1	474570	+		9469	12955	5728	5757	9630	9630					0.00027989166869701876
ELQRQLAC	8	Unmodified	_ELQRQLAC_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7495422363281	2	480.750201	959.48585	-0.29866	-0.00014358	-1.0742	-0.0005164	-1.3728	-0.00065998	480.74967782490853	25.214	0.18219	25.214	25.128	25.31	0					7	4	2	0	0	0	0.70055	1	7998	7998		33.516	0	1	37999	+		9470	14500	5729	5758	9631	9631					0.004486568772449573
ELRCCCLVL	9	Unmodified	_ELRCCCLVL_					0	0	0			REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2616577148438	2	526.258491	1050.50243	3.4614	0.0018216	2.0974	0.0011038	5.5588	0.0029254	526.2599261644668	33.026	0.40649	33.026	32.64	33.046	0					18	8	4	0	0	0	0.25109	1	12505	12505		55.504	4.1688	1	486600	+		9471	20109	5730	5759	9632	9632					-0.02080301552655328
ELRKETYV	8	Unmodified	_ELRKETYV_					0	0	0			REV__LRRC63|p.N148S|1|0.15|ENSG00000173988|chr13:46227869-46227869|A/G|missense_variant	REV__LRRC63|p.N148S|1|0.15|ENSG00000173988|chr13:46227869-46227869|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2874755859375	2	519.284931	1036.55531	0.57938	0.00030086	-0.052743	-2.7389E-05	0.52664	0.00027347	519.2851615873669	32.644	0.23228	32.644	32.55	32.782	0					16	9	3	0	0	0	0.77771	1	10577	10577		14.865	1.0895	1	101530	+		9472	16539	5731	5760	9633	9633					0.03849439097666618
ELRLEARL	8	Unmodified	_ELRLEARL_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.30078125	2	500.300916	998.587279	-0.66053	-0.00033047	0.31756	0.00015888	-0.34297	-0.00017159	500.3011462265075	23.903	0.11749	23.903	23.829	23.947	0					6	2	3	0	0	0	0.61925	1	8173	8173		45.972	1.5951	1	609380	+		9473	13693	5732	5761	9634	9634					0.08792851571456595
ELRNKAGPGS	10	Unmodified	_ELRNKAGPGS_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7781982421875	2	514.777805	1027.54106	0.12661	6.5174E-05	0.46483	0.00023928	0.59144	0.00030446	514.7780568655606	20.517	0.14234	20.517	20.454	20.596	0					7	4	2	0	0	0	0.35046	1	5495	5495		61.691	10.499	1	114350	+		9474	22138	5733	5762	9635	9635					0.028387866693947217
ELRNLVPLL	9	Unmodified	_ELRNLVPLL_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.2259826660156	3	356.225486	1065.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.853	1	45.853	45.353	46.353	0								0	0	0	0.34845	1	18370	18370		25.574	0	1				9475	3141	5734	5763	9636	9636					0.12442881782430959
ELRNSLEEP	9	Unmodified	_ELRNSLEEP_					0	0	0			REV__nc|nan|Q8TB03-2|CXorf38	REV__nc|nan|Q8TB03-2|CXorf38	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.51715087890625	3	362.852377	1085.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.822	1	21.822	21.322	22.322	0								0	0	0	0.33029	1	6395	6395		29.17	2.1227	1		+		9476	17044	5735	5764	9637	9637					-0.004043566329301029
ELRPLLYSL	9	Unmodified	_ELRPLLYSL_					0	0	0		ENST00000596245.1_1_19:8590207-8591472:-|nuORF	ENST00000596245.1_1_19:8590207-8591472:-|nuORF	ENST00000596245.1_1_19:8590207-8591472:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.55450439453125	3	368.553492	1102.63865	0.91574	0.0003375	2.9098	0.0010724	3.8256	0.0014099	368.5542372593565	30.385	0.65174	30.385	30.23	30.881	0					18	13	2	0	0	0	0.35021	1	11252	11252		45.972	3.108	1	705380			9477	11004	5736	5765	9638	9638					0.09143175545523263
ELRQARFLL	9	Unmodified	_ELRQARFLL_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.5646667480469	3	382.564502	1144.67168	0.83488	0.00031939	-0.63195	-0.00024176	0.20292	7.7632E-05	382.5641812160304	17.582	0.12905	17.582	17.539	17.668	0					7	3	3	0	0	0	0.30951	1	5020	5020		49.442	5.0644	1	314640			9478	3562	5737	5766	9639	9639					0.10512802388234377
ELRQIADVI	9	Unmodified	_ELRQIADVI_					0	0	0		nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-2|MCM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.8062133789062	2	528.806031	1055.59751	0.11012	5.823E-05	0.85564	0.00045247	0.96576	0.0005107	528.8062293323964	18.287	0.18688	18.287	18.198	18.385	0					8	4	3	0	0	0	0.25716	1	5334	5334		54.776	7.119	1	631460			9479	11628	5738	5767	9640	9640					0.07193414506036788
ELRRFGQA	8	Unmodified	_ELRRFGQA_					0	0	0			REV__ENST00000598375.5_1_19:18699611-18699888:+|nuORF	REV__ENST00000598375.5_1_19:18699611-18699888:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7698974609375	2	488.769783	975.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.38	1	21.38	20.88	21.88	0								0	0	0	1.7419	1	5883	5883		55.504	4.1688	1		+		9480	12844	5739	5768	9641	9641					0.03627125223147232
ELRTDPPPN	9	Unmodified	_ELRTDPPPN_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7645874023438	2	519.764363	1037.51417	0.99015	0.00051464	-0.074929	-3.8945E-05	0.91522	0.0004757	519.7643375039763	29.769	0.12032	29.769	29.694	29.814	0					5	3	2	0	0	0	0.61124	1	10068	10068		19.104	0.77911	1	76409	+		9481	13844	5740	5769	9642	9642					-0.0030832194179311045
ELRVKESI	8	Unmodified	_ELRVKESI_					0	0	0			REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2872009277344	2	487.287474	972.560395	-0.002801	-1.3649E-06	-0.58339	-0.00028428	-0.58619	-0.00028564	487.28717288275743	21.873	0.22686	21.873	21.762	21.989	0					12	6	3	0	0	0	0.29212	1	6100	6100		85.161	13.865	1	504230	+		9482	15238	5741	5770	9643	9643					0.07301742960294177
ELRVKESI	8	Unmodified	_ELRVKESI_					0	0	0			REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.28729248046875	2	487.287474	972.560395	-0.33808	-0.00016474	0.021568	1.051E-05	-0.31651	-0.00015423	487.28750554060156	22.205	0.18903	22.205	22.106	22.295	0					12	4	3	0	0	0	0.25143	1	7183	7183		98.629	5.4861	1	2426100	+		9483	15238	5741	5770	9644	9644					0.07301742960294177
ELRYIKELL	9	Unmodified	_ELRYIKELL_					0	0	0			REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.9045104980469	3	392.904413	1175.69141	0.88696	0.00034849	-0.80608	-0.00031671	0.080877	3.1777E-05	392.9040746871352	24.866	0.33374	24.866	24.741	25.074	0					16	8	3	0	0	0	0.44593	1	8441	8441		37.812	1.3648	1	338950	+		9484	15525	5742	5771	9645	9645					0.11059133608341654
ELSALKTQR	9	Unmodified	_ELSALKTQR_					0	0	0		MTMR14|p.F405L|1|0.11|ENSG00000163719|chr3:9687871-9687871|C/A|missense_variant	MTMR14|p.F405L|1|0.11|ENSG00000163719|chr3:9687871-9687871|C/A|missense_variant	MTMR14|p.F405L|1|0.11|ENSG00000163719|chr3:9687871-9687871|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3048706054688	2	523.303655	1044.59276	1.7929	0.00093825	-0.44109	-0.00023082	1.3518	0.00070742	523.3033414963174	50.387	1.1313	50.387	50.125	51.256	0					104	69	2	0	0	0	0.56424	1	18920	18920		25.574	1.3713	1	129440			9485	11385	5743	5772	9646	9646					0.07224530363282611
ELSAQKARLH	10	Unmodified	_ELSAQKARLH_					0	0	0		ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.8279418945312	2	576.827829	1151.64111	0.023453	1.3528E-05	3.6405	0.0020999	3.6639	0.0021135	576.8299191230777	18.37	0.086166	18.37	18.332	18.418	0					5	3	2	0	0	0	0.5276	1	4790	4790		37.812	8.6415	1	38416			9486	8064	5744	5773	9647	9647					0.07135024003196122
ELSFEKKK	8	Unmodified	_ELSFEKKK_					0	0	0			REV__ENSG00000183530|ENST00000327423|PRR14L	REV__ENSG00000183530|ENST00000327423|PRR14L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7926330566406	2	504.78985	1007.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.962	1	13.962	13.462	14.462	0								0	0	0	1.7419	1	3366	3366		63.306	0	1		+		9487	16938	5745	5774	9648	9648					0.061666271030503594
ELSFSFFCL	9	Unmodified	_ELSFSFFCL_					0	0	0			REV__ENST00000394524.7_1_4:114374340-114374508:-|nuORF	REV__ENST00000394524.7_1_4:114374340-114374508:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7593383789062	2	546.757161	1091.49977	1.9124	0.0010456	2.923	0.0015982	4.8354	0.0026438	546.7589598496294	45.247	0.13837	45.247	45.196	45.334	0					9	6	2	0	0	0	0.43426	1	18118	18118		38.806	8.3025	1	70262	+		9488	18866	5746	5775	9649	9649					-0.042321104142956756
ELSKAKEII	9	Unmodified	_ELSKAKEII_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-9|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.2095031738281	3	344.209613	1029.60701	0.50537	0.00017395	-3.2751	-0.0011273	-2.7697	-0.00095336	344.2081024606476	25.141	0.94839	25.141	24.34	25.289	0					28	22	2	0	0	0	0.28897	1	8562	8562		51.193	1.6567	1	785430			9489	854	5747	5776	9650	9650					0.09339182791586609
ELSKAKEII	9	Unmodified	_ELSKAKEII_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-9|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.20941162109375	3	344.209613	1029.60701	-0.76235	-0.00026241	0.66604	0.00022926	-0.096309	-3.3151E-05	344.20983271515155	24.882	0.19841	24.882	24.806	25.004	0					14	6	3	0	0	0	0.1424	1	7658	7658		69.628	7.5202	1	515270			9490	854	5747	5776	9651	9651					0.09339182791586609
ELSKAKEII	9	Unmodified	_ELSKAKEII_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-9|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.2095642089844	3	344.209613	1029.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.121	1	25.121	24.621	25.621	0								0	0	0	0.029874	1	8877	8877		95.815	10.9	1				9491	854	5747	5776	9652	9652					0.09339182791586609
ELSKAKEII	9	Unmodified	_ELSKAKEII_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-9|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.2096252441406	3	344.209613	1029.60701	1.5277	0.00052585	-1.4443	-0.00049714	0.083417	2.8713E-05	344.2092119015665	25.063	0.60855	25.063	24.707	25.315	0					17	7	3	0	0	0	0.082776	1	8734	8734		83.647	9.392	1	1975500			9492	854	5747	5776	9653	9653					0.09339182791586609
ELSKAKEII	9	Unmodified	_ELSKAKEII_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-9|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.20965576171875	3	344.209613	1029.60701	3.0271	0.001042	-3.6033	-0.0012403	-0.57624	-0.00019835	344.20836108494285	25.036	0.90745	25.036	24.929	25.837	0					27	16	4	0	0	0	0.021961	1	8725	8725		118.74	20.114	1	4809600			9493	854	5747	5776	9654	9654					0.09339182791586609
ELSKPHDSL	9	Unmodified	_ELSKPHDSL_					0	0	0			REV__GAD1|p.E163K|1|0.22|ENSG00000128683|chr2:170831132-170831132|G/A|missense_variant	REV__GAD1|p.E163K|1|0.22|ENSG00000128683|chr2:170831132-170831132|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.266845703125	2	513.266739	1024.51892	0.08742	4.487E-05	-0.05204	-2.6711E-05	0.03538	1.8159E-05	513.2667915296333	35.763	0.21232	35.763	35.637	35.849	0					9	4	3	0	0	0	0.33044	1	13861	13861		47.657	0	1	203360	+		9494	20685	5748	5777	9655	9655					0.007645622009476938
ELSLRVLSK	9	Unmodified	_ELSLRVLSK_					0	0	0			REV__ENSG00000165516|ENST00000298307|KLHDC2	REV__ENSG00000165516|ENST00000298307|KLHDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8253173828125	2	522.824224	1043.63389	2.0653	0.0010798	-1.0516	-0.0005498	1.0137	0.00053001	522.8241023617621	27.358	0.14177	27.358	27.265	27.407	0					5	3	2	0	0	0	0.28897	1	9538	9538		51.193	3.2332	1	45752	+		9495	16047	5749	5778	9656	9656					0.1138229140274234
ELSPCALLNGG	11	Unmodified	_ELSPCALLNGG_					0	0	0		LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.26904296875	2	537.268424	1072.5223	1.9755	0.0010614	-0.46264	-0.00024856	1.5129	0.00081282	537.2682076689513	38.975	2.6514	38.975	38.111	40.762	0					186	58	4	0	0	0	0.42746	1	15633	15633		49.536	0.094497	1	2299200			9496	6112	5750	5779	9657	9657					-0.011065110166782688
ELSPVSASDI	10	Unmodified	_ELSPVSASDI_					0	0	0			REV__ENST00000560605.1_1_15:91524929-91537723:-|nuORF	REV__ENST00000560605.1_1_15:91524929-91537723:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7593688964844	2	509.258579	1016.50261	0.93026	0.00047374	-0.98493	-0.00050158	-0.054674	-2.7843E-05	509.2570675799736	34.961	0.58617	34.961	34.731	35.317	0					20	15	2	0	0	0	0.50881	1	13118	13118		44.377	1.981	1	84267	+		9497	17449	5751	5780	9658	9658					-0.004985637557979317
ELSQNPMLL	9	Unmodified	_ELSQNPMLL_					0	0	0		PRKDC|p.S1755N|1|0.2|ENSG00000253729|chr8:47877823-47877823|C/T|missense_variant	PRKDC|p.S1755N|1|0.2|ENSG00000253729|chr8:47877823-47877823|C/T|missense_variant	PRKDC|p.S1755N|1|0.2|ENSG00000253729|chr8:47877823-47877823|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7749633789062	2	522.773342	1043.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.058	1	21.058	20.558	21.558	0								0	0	0	0.22284	1	5739	5739		47.657	3.2801	1				9498	11972	5752	5781	9659	9659					0.012106769886941038
ELSQTHPQL	9	Unmodified	_ELSQTHPQL_					0	0	0			REV__ENST00000422370.2_1_19:45647868-45648611:+|nuORF	REV__ENST00000422370.2_1_19:45647868-45648611:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7734375	2	526.772188	1051.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.703	1	35.703	35.203	36.203	0								0	0	0	0.30504	1	11702	11702		34.173	0.65696	1		+		9499	19088	5753	5782	9660	9660					0.006119645752505676
ELSRAVSKLE	10	Unmodified	_ELSRAVSKLE_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3224487304688	2	566.322045	1130.62954	1.6949	0.00095987	-0.55219	-0.00031272	1.1427	0.00064716	566.3218630424258	18.937	0.61205	18.937	18.83	19.442	0					21	12	4	0	0	0	0.36647	1	5775	5775		59.931	5.1545	1	1212200			9500	5358	5754	5783	9661	9661					0.06944782189179932
ELSRIVLM	8	Unmodified	_ELSRIVLM_					0	0	0		ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C;RAB40C|p.Q271Pfs*7|1|0.48|ENSG00000197562|chr16:627579-627580|-/C|frameshift_variant;ENSG00000197562|ENST00000248139|RAB40C	ENST00000561781.1_1_16:675886-677619:+|nuORF	ENST00000561781.1_1_16:675886-677619:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7806091308594	2	480.78097	959.547388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.559	1	38.559	38.059	39.059	0								0	0	0	1.7419	1	12571	12571		33.516	0.70317	1				9501	7472	5755	5784	9662	9662					0.06599588576534643
ELSSAARIQQ	10	Unmodified	_ELSSAARIQQ_					0	0	0			REV__ENSG00000165197|ENST00000297904|VEGFD	REV__ENSG00000165197|ENST00000297904|VEGFD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2979736328125	2	551.796195	1101.57784	0.45219	0.00024952	-0.17598	-9.7107E-05	0.27621	0.00015241	551.796198878352	27.699	0.16137	27.699	27.569	27.73	0					5	3	2	0	0	0	0.63224	1	10067	10067		30.318	0	1	38357	+		9502	16030	5756	5785	9663	9663					0.031110384952853565
ELSSIAALSQ	10	Unmodified	_ELSSIAALSQ_					0	0	0		UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant;nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant	UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.774658203125	2	509.774396	1017.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.728	1	17.728	17.228	18.228	0								0	0	0	0.34115	1	4482	4482		44.377	0.26039	1				9503	3881	5757	5786	9664	9664					0.026174289981554466
ELTLGMKF	8	Unmodified	_ELTLGMKF_					0	0	0			REV__ENST00000496976.1_1_2:189454447-189458735:+|nuORF	REV__ENST00000496976.1_1_2:189454447-189458735:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7561340332031	2	469.754421	937.494289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.128	1	26.128	25.628	26.628	0								0	0	0	1.7419	1	8974	8974		40.573	8.9937	1		+		9504	15229	5758	5787	9665	9665					0.02304210793886341
ELTLLIRN	8	Unmodified	_ELTLLIRN_					0	0	0			REV__GUCY2F|p.V883Pfs*16|1|0.02|ENSG00000101890|chrX:109392043-109392046|GACC/-|frameshift_variant	REV__GUCY2F|p.V883Pfs*16|1|0.02|ENSG00000101890|chrX:109392043-109392046|GACC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2975158691406	2	486.297842	970.581131	0.82786	0.00040259	-0.88205	-0.00042894	-0.054194	-2.6355E-05	486.2975662998464	41.638	0.34151	41.638	41.518	41.86	0					15	9	3	0	0	0	0.5676	1	16586	16586		53.351	3.9099	1	169290	+		9505	13617	5759	5788	9666	9666					0.09466333339958055
ELTLNRQEL	9	Unmodified	_ELTLNRQEL_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.307373046875	2	558.306395	1114.59824	0.12046	6.7254E-05	1.312	0.0007325	1.4325	0.00079975	558.8083007685251	31.674	0.11028	31.674	31.628	31.739	0					7	4	2	0	0	0	0.25761	1	10518	10518		47.657	0	1	39934	+		9506	14986	5760	5789	9667	9667					0.04552209155099263
ELTPATPLW	9	Unmodified	_ELTPATPLW_					0	0	0		nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4	nc|ENSG00000137648|Q9NRS4-4|TMPRSS4	nc|ENSG00000137648|Q9NRS4-4|TMPRSS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.780029296875	2	514.276575	1026.5386	0.020397	1.0489E-05	3.2354	0.0016639	3.2558	0.0016744	514.2779616236737	11.345	0.080667	11.345	11.286	11.367	0					6	4	2	0	0	0	0.49003	1	2176	2176		33.516	3.0119	1	86255			9507	4180	5761	5790	9668	9668					0.026389382117031346
ELTQDKAL	8	Unmodified	_ELTQDKAL_					0	0	0			REV__URB1|p.N1002K|1|0.4|ENSG00000142207|chr21:32349310-32349310|A/C|missense_variant	REV__URB1|p.N1002K|1|0.4|ENSG00000142207|chr21:32349310-32349310|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7521057128906	2	459.250557	916.486562	-0.42294	-0.00019424	0.6118	0.00028097	0.18886	8.6733E-05	459.25067682674023	22.954	0.13549	22.954	22.868	23.004	0					6	4	2	0	0	0	0.69548	1	6572	6572		34.173	1.3601	1	41540	+		9508	22262	5762	5791	9669	9669					0.024977747979505693
ELTQNQVVL	9	Unmodified	_ELTQNQVVL_					0	0	0		ENSG00000104164|ENST00000220531|BLOC1S6	ENSG00000104164|ENST00000220531|BLOC1S6	ENSG00000104164|ENST00000220531|BLOC1S6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7883911132812	2	522.290214	1042.56587	0.084053	4.39E-05	-1.3384	-0.00069903	-1.2543	-0.00065513	522.2905549807372	26.759	0.36264	26.759	26.564	26.927	0					17	8	3	0	0	0	0.16806	1	9297	9297		65.465	3.358	1	1188400			9509	2272	5763	5792	9670	9670					0.04629421752088092
ELTQQYKY	8	Unmodified	_ELTQQYKY_					0	0	0			REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7726440429688	2	536.769114	1071.52368	3.346	0.0017961	-1.558	-0.00083629	1.788	0.00095976	536.7684183905	33.424	0.57541	33.424	33.317	33.892	0					27	12	4	0	0	0	0.61938	1	12880	12880		45.952	1.8352	1	2320000	+		9510	13447;22306	5764	5793	9671	9671					-0.00922553656278069
ELTTLHYLAA	10	Unmodified	_ELTTLHYLAA_					0	0	0			REV__ENSG00000162763|ENST00000294818|LRRC52	REV__ENSG00000162763|ENST00000294818|LRRC52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.3051147460938	2	566.305864	1130.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.305	1	18.305	17.805	18.805	0								0	0	0	0.40002	1	4750	4750		30.504	0.18592	1		+		9511	15840	5765	5794	9672	9672					0.03709994786186144
ELTVLDKCR	9	Unmodified	_ELTVLDKCR_					0	0	0		ENST00000548527.5_2_12:104238192-104276310:-|nuORF;ENST00000551270.1_1_12:104237536-104277386:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P	ENST00000548527.5_2_12:104238192-104276310:-|nuORF	ENST00000548527.5_2_12:104238192-104276310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7947387695312	2	538.792066	1075.56958	3.3972	0.0018304	1.3336	0.00071852	4.7308	0.0025489	538.7926878098014	46.503	0.22559	46.503	46.388	46.613	0					28	10	3	0	0	0	0.39215	1	18587	18587		42.396	1.8235	1	280070			9512	10598	5766	5795	9673	9673					0.03481768254277995
ELTWDKRLV	9	Unmodified	_ELTWDKRLV_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.2217102050781	3	387.220513	1158.63971	0.44261	0.00017139	2.3961	0.00092782	2.8387	0.0010992	387.22138078248975	28.316	0.15763	28.316	28.207	28.365	0					5	3	2	0	0	0	0.41354	1	10369	10369		39.253	5.0803	1	129440	+		9513	21091	5767	5796	9674	9674					0.0667338991440829
ELVEYTNTM	9	Oxidation (M)	_ELVEYTNTM(Oxidation (M))_		ELVEYTNTM(1)		ELVEYTNTM(51)	0	0	1			REV__ENSG00000064393|ENST00000406875|HIPK2	REV__ENSG00000064393|ENST00000406875|HIPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.2484741210938	2	558.249897	1114.48524	-0.84798	-0.00047339	-0.4563	-0.00025473	-1.3043	-0.00072812	558.2496019866892	33.447	1.1975	33.447	33.242	34.44	0					88	35	5	0	0	0	0.2873	1	11830	11830		51.335	8.9393	1	3397600	+		9514	13104	5768	5797	9675	9675		507			-0.067422273531065
ELVKGGVLA	9	Unmodified	_ELVKGGVLA_					0	0	0			REV__ENST00000490912.5_1_7:26240373-26240535:-|nuORF	REV__ENST00000490912.5_1_7:26240373-26240535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2736511230469	2	443.273835	884.533118	-0.29088	-0.00012894	-0.23958	-0.0001062	-0.53046	-0.00023514	443.27369578875187	33.972	0.22981	33.972	33.885	34.114	0					18	10	2	0	0	0	0.1424	1	11089	11089		69.628	9.5094	1	355930	+		9515	19716	5769	5798	9676	9676					0.08623259419903206
ELVKGGVLA	9	Unmodified	_ELVKGGVLA_					0	0	0			REV__ENST00000490912.5_1_7:26240373-26240535:-|nuORF	REV__ENST00000490912.5_1_7:26240373-26240535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.27398681640625	2	443.273835	884.533118	-1.156	-0.00051242	0.83641	0.00037076	-0.31959	-0.00014167	443.2741523580838	34.052	0.20354	34.052	33.963	34.167	0					19	8	3	0	0	0	0.27249	1	11461	11461		52.937	1.6012	1	181950	+		9516	19716	5769	5798	9677	9677					0.08623259419903206
ELVLKSAVEA	10	Unmodified	_ELVLKSAVEA_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8094482421875	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.891	1	43.891	43.391	44.391	0								0	0	0	0.4201	1	14309	14309		28.081	0	1				9517	5621	5770	5799	9678	9678					0.07542878928961727
ELVNLLKL	8	Unmodified	_ELVNLLKL_					0	0	0			REV__ENSG00000177138|ENST00000327220|FAM9B	REV__ENSG00000177138|ENST00000327220|FAM9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.80584716796875	2	471.305136	940.595718	0.59524	0.00028054	-1.5746	-0.00074211	-0.97935	-0.00046157	471.30446536240106	42.01	0.10263	42.01	41.934	42.037	0					7	4	2	0	0	0	0.5676	1	16494	16494		53.351	0	1	90396	+		9518	16687	5771	5800	9679	9679					0.12304405488100656
ELVQGAKLL	9	Unmodified	_ELVQGAKLL_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7998962402344	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.63	1	37.63	37.13	38.13	0								0	0	0	0.28666	1	14280	14280		37.812	0	1		+	+	9519	12610	5772	5801	9680	9680					0.09987217482728283
ELVQGPLFL	9	Unmodified	_ELVQGPLFL_					0	0	0			REV__ENST00000284006.10_1_19:34303676-34303850:+|nuORF	REV__ENST00000284006.10_1_19:34303676-34303850:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.293701171875	2	508.294768	1014.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.087	1	28.087	27.587	28.587	0								0	0	0	0.19847	1	9276	9276		44.117	0	1		+		9520	18139	5773	5802	9681	9681					0.06827815108431423
ELVSASSLL	9	Unmodified	_ELVSASSLL_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.760498046875	2	459.760758	917.506963	-0.91412	-0.00042028	0.55685	0.00025602	-0.35726	-0.00016426	459.76099591050456	30.693	0.19761	30.693	30.617	30.815	0					10	7	2	0	0	0	0.26904	1	10108	10108		53.351	2.016	1	128450	+		9521	16839	5774	5803	9682	9682					0.04490945457780526
ELVTMMGDQG	10	2 Oxidation (M)	_ELVTM(Oxidation (M))M(Oxidation (M))GDQG_		ELVTM(1)M(1)GDQG		ELVTM(66)M(66)GDQG	0	0	2		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.7352294921875	2	556.733557	1111.45256	0.11649	6.4857E-05	1.4464	0.00080525	1.5629	0.0008701	556.7344895352187	19.196	0.49792	19.196	18.859	19.357	0					29	15	2	0	0	0	0.30737	1	5146	5146		66.429	23.565	1	110200			9522	11709	5775	5804	9683	9683		458;459			-0.0987075774760342
ELVTVIGAI	9	Unmodified	_ELVTVIGAI_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7814025878906	2	457.781493	913.548434	0.7751	0.00035483	-0.94611	-0.00043311	-0.17101	-7.8284E-05	457.78101484885485	40.291	0.11435	40.291	40.227	40.341	0					9	5	2	0	0	0	0.48389	1	15352	15352		34.173	0.65696	1	97035			9523	5765	5776	5805	9684	9684					0.08820126217108282
ELWLEQNIK	9	Unmodified	_ELWLEQNIK_					0	0	0		ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.5471496582031	3	391.548518	1171.62372	-1.2345	-0.00048335	-2.1246	-0.00083188	-3.3591	-0.0013152	391.54767952811216	19.218	0.17021	19.218	19.152	19.322	0					8	5	2	0	0	0	0.21263	1	5170	5170		60.118	1.8883	1	103090			9524	8556	5777	5806	9685	9685					0.04477683677509958
ELWPLQPW	8	Unmodified	_ELWPLQPW_					0	0	0		ENST00000487078.5_1_2:27280298-27281376:+|nuORF	ENST00000487078.5_1_2:27280298-27281376:+|nuORF	ENST00000487078.5_1_2:27280298-27281376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7826538085938	2	534.779285	1067.54402	3.3736	0.0018041	2.5935	0.001387	5.9671	0.0031911	534.7808160272446	30.171	0.31146	30.171	30.065	30.376	0					20	6	4	0	0	0	0.44433	1	11147	11147		65.803	5.5092	1	1979500			9525	10033	5778	5807	9686	9686					0.01294661794190688
ELYELGPVL	9	Unmodified	_ELYELGPVL_					0	0	0			REV__ENSG00000119227|ENST00000412723|PIGZ	REV__ENSG00000119227|ENST00000412723|PIGZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7821655273438	2	516.784233	1031.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.403	1	29.403	28.903	29.903	0								0	0	0	0.23459	1	9886	9886		45.952	5.1738	1		+		9526	14236	5779	5808	9687	9687					0.03939805008917574
ELYIAKPRM	9	Unmodified	_ELYIAKPRM_					0	0	0			REV__ENST00000488564.2_1_7:27881117-27881465:+|nuORF	REV__ENST00000488564.2_1_7:27881117-27881465:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8165893554688	2	560.812802	1119.61105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.085	1	44.085	43.585	44.585	0								0	0	0	0.20989	1	17665	17665		42.396	0	1		+		9527	19693	5780	5809	9688	9688					0.056029490136324966
ELYLLPIGE	9	Unmodified	_ELYLLPIGE_					0	0	0			REV__ENSG00000174358|ENST00000304460|SLC6A19	REV__ENSG00000174358|ENST00000304460|SLC6A19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.5306701660156	3	349.530464	1045.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.405	1	19.405	18.905	19.905	0								0	0	0	0.3428	1	5992	5992		26.693	2.4902	1		+		9528	16564	5781	5810	9689	9689					0.04860091525961252
ELYQAQQK	8	Unmodified	_ELYQAQQK_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2627868652344	2	504.261456	1006.50836	0.6603	0.00033296	-1.3254	-0.00066834	-0.66508	-0.00033538	504.2619645988438	25.263	0.41689	25.263	25.152	25.568	0					31	14	4	0	0	0	0.67836	1	7681	7681		26.693	0	1	226630	+		9529	16376	5782	5811	9690	9690					0.005365795465195333
EMAEVINVGE	10	Unmodified	_EMAEVINVGE_					0	0	0			REV__ENST00000527147.1_1_11:100537243-100537690:+|nuORF	REV__ENST00000527147.1_1_11:100537243-100537690:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7598266601562	2	545.757889	1089.50123	3.7551	0.0020494	-0.38795	-0.00021173	3.3672	0.0018377	545.7577211533554	19.172	0.21312	19.172	19.063	19.276	0					12	4	4	0	0	0	0.41335	1	5887	5887		54.776	1.8396	1	991700	+		9530	20007	5783	5812	9691	9691					-0.03994521116192118
EMAIHRGEY	9	Unmodified	_EMAIHRGEY_					0	0	0			REV__nc|ENSG00000162729|Q969P0-2|IGSF8	REV__nc|ENSG00000162729|Q969P0-2|IGSF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.2589721679688	2	553.258391	1104.50223	0.62426	0.00034538	0.10683	5.9103E-05	0.73109	0.00040448	553.2583849357782	18.895	0.5234	18.895	18.833	19.356	0					32	13	3	0	0	0	0.24334	1	5602	5602		40.778	0	1	1846200	+		9531	15835	5784	5813	9692	9692					-0.045842619566428766
EMALPLPL	8	Unmodified	_EMALPLPL_					0	0	0			REV__nc|ENSG00000100320|O43251-9|RBFOX2	REV__nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2532043457031	2	442.251514	882.488476	2.6175	0.0011576	1.3952	0.00061702	4.0126	0.0017746	442.25216078907766	31.218	0.40805	31.218	30.995	31.403	0					15	8	3	0	0	0	0.66238	1	11676	11676		39.021	0	1	333110	+		9532	20956	5785	5814	9693	9693					0.042531122822197176
EMAPQSVSPR	10	Unmodified	_EMAPQSVSPR_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2726440429688	2	551.271498	1100.52844	1.8349	0.0010116	-0.2238	-0.00012337	1.6111	0.00088818	551.271256220621	25.151	0.14311	25.151	25.055	25.198	0					6	3	2	0	0	0	0.62235	1	7942	7942		31.53	2.3803	1	114350			9533	3053	5786	5815	9694	9694					-0.017799927851683606
EMAQGTIWSV	10	Unmodified	_EMAQGTIWSV_					0	0	0			REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8	REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.2686767578125	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.059	1	19.059	18.559	19.559	0								0	0	0	0.4162	1	4859	4859		25.574	0	1		+		9534	21210	5787	5816	9695	9695					-0.03314511016696997
EMEEKLIMK	9	2 Oxidation (M)	_EM(Oxidation (M))EEKLIM(Oxidation (M))K_		EM(1)EEKLIM(1)K		EM(90)EEKLIM(90)K	0	0	2			REV__DMTN|p.R327Gfs*22|1|0.42|ENSG00000158856|chr8:22080821-22080821|G/-|frameshift_variant	REV__DMTN|p.R327Gfs*22|1|0.42|ENSG00000158856|chr8:22080821-22080821|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.7931518554688	2	591.790875	1181.5672	3.1781	0.0018808	0.68971	0.00040817	3.8678	0.0022889	591.7912910946915	38.243	0.51923	38.243	37.961	38.48	0					20	11	2	0	0	0	0.063823	1	14986	14986		90.37	23.941	1	1636700	+		9535	12720	5788	5817	9696	9696		488;489			-0.01632448265650055
EMEFFFFN	8	Unmodified	_EMEFFFFN_					0	0	0			REV__nc|ENSG00000114316|Q13107-3|USP4	REV__nc|ENSG00000114316|Q13107-3|USP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7332763671875	2	555.733686	1109.45282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.608	1	10.608	10.108	11.108	0								0	0	0	1.7419	1	2048	2048		8.8223	0	1		+		9536	20980	5789	5818	9697	9697					-0.09752969965438751
EMEKQMGAL	9	Unmodified	_EMEKQMGAL_					0	0	0			REV__ENSG00000156232|ENST00000286760|WHAMM	REV__ENSG00000156232|ENST00000286760|WHAMM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7437744140625	2	518.743728	1035.4729	0.27044	0.00014029	-0.63219	-0.00032794	-0.36174	-0.00018765	518.7425896539131	38.709	0.55618	38.709	38.493	39.049	0					17	11	3	0	0	0	0.14603	1	15182	15182		68.787	5.4806	1	138890	+		9537	15622	5790	5819	9698	9698					-0.04341542297129308
EMESYLKL	8	Unmodified	_EMESYLKL_					0	0	0			REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7546081542969	2	506.754618	1011.49468	1.0998	0.00055732	3.0585	0.0015499	4.1583	0.0021073	507.2587252347013	40.553	0.235	40.553	40.441	40.676	0					13	9	2	0	0	0	0.61925	1	15990	15990		44.117	3.3386	1	85428	+		9538	16404	5791	5820	9699	9699					-0.01060414276935262
EMGKPFGFCK	10	Unmodified	_EMGKPFGFCK_					0	0	0		tr|U7SKJ1|U7SKJ1_FUSNUDUF4418domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02008PE=4SV=1	tr|U7SKJ1|U7SKJ1_FUSNUDUF4418domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02008PE=4SV=1	tr|U7SKJ1|U7SKJ1_FUSNUDUF4418domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02008PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.2701416015625	2	572.269912	1142.52527	1.738	0.00099459	-1.7571	-0.0010055	-0.019122	-1.0943E-05	572.2686828266762	40.014	0.14601	40.014	39.939	40.085	0					8	5	2	0	0	0	0.67464	1	15259	15259		14.137	0	1	51077			9539	22628	5792	5821	9700	9700					-0.040289591635428224
EMGKSCIKM	9	Carbamidomethyl (C),2 Oxidation (M)	_EM(Oxidation (M))GKSC(Carbamidomethyl (C))IKM(Oxidation (M))_	EMGKSC(1)IKM	EM(1)GKSCIKM(1)	EMGKSC(46)IKM	EM(46)GKSCIKM(46)	0	1	2		ZFYVE16|p.I1258M|1|0.36|ENSG00000039319|chr5:80456544-80456544|A/G|missense_variant	ZFYVE16|p.I1258M|1|0.36|ENSG00000039319|chr5:80456544-80456544|A/G|missense_variant	ZFYVE16|p.I1258M|1|0.36|ENSG00000039319|chr5:80456544-80456544|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2490844726562	2	558.24832	1114.48209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.351	1	37.351	36.851	37.851	0								0	0	0	0.23459	1	14606	14606		45.952	7.1458	1				9540	23140	5793	5822	9701	9701	761	832;833			-0.07057517003136127
EMHSKLNVL	9	Oxidation (M)	_EM(Oxidation (M))HSKLNVL_		EM(1)HSKLNVL		EM(72)HSKLNVL	0	0	1			REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7830810546875	2	543.784241	1085.55393	0.32256	0.0001754	-2.9485	-0.0016034	-2.626	-0.001428	543.7832604279574	24.109	0.2173	24.109	24.029	24.246	0					6	4	2	0	0	0	0.13267	1	8401	8401		71.877	10.906	1	101140	+		9541	20342	5794	5823	9702	9702		735			0.014574817372704274
EMIEALQK	8	Unmodified	_EMIEALQK_					0	0	0		ERCC3|p.E279A|1|0.31|ENSG00000163161|chr2:127288851-127288851|T/G|missense_variant	ERCC3|p.E279A|1|0.31|ENSG00000163161|chr2:127288851-127288851|T/G|missense_variant	ERCC3|p.E279A|1|0.31|ENSG00000163161|chr2:127288851-127288851|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2563171386719	2	481.254785	960.495018	2.3502	0.001131	0.64912	0.00031239	2.9993	0.0014434	481.2551447964725	11.959	0.49543	11.959	11.882	12.377	0					22	14	3	0	0	0	0.32815	1	2439	2439		79.451	0	1	3308300			9542	11113	5795	5824	9703	9703					0.013190054429287557
EMILLLLICQP	11	Unmodified	_EMILLLLICQP_					0	0	0		ENSG00000182793|ENST00000370989|GSTA5	ENSG00000182793|ENST00000370989|GSTA5	ENSG00000182793|ENST00000370989|GSTA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.248046875	3	429.246794	1284.71855	2.5002	0.0010732	-0.0082013	-3.5204E-06	2.492	0.0010697	429.2468707590063	33.71	0.47388	33.71	33.466	33.94	0					26	10	4	0	0	0	0.60656	1	12812	12812		25.892	0	1	3120700			9543	6921	5796	5825	9704	9704					0.08758157832880897
EMIMLGRL	8	Unmodified	_EMIMLGRL_					0	0	0		ENST00000482576.1_1_22:24217352-24224826:+|nuORF;ENST00000255830.7_1_22:24210693-24224826:+|nuORF;nc|ENSG00000133460|Q9BYW1-2|SLC2A11;ENST00000461809.5_1_22:24200186-24224826:+|nuORF;ENST00000405286.6_1_22:24199637-24224826:+|nuORF;nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11	ENST00000482576.1_1_22:24217352-24224826:+|nuORF	ENST00000482576.1_1_22:24217352-24224826:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7613525390625	2	481.761723	961.508894	-0.54515	-0.00026263	0.09141	4.4038E-05	-0.45374	-0.00021859	481.7617791902786	25.958	0.19994	25.958	25.817	26.017	0					7	3	3	0	0	0	0.5676	1	9248	9248		53.351	10.955	1	136360			9544	3857	5797	5826	9705	9705					0.026599596703704265
EMISLVLLM	9	Unmodified	_EMISLVLLM_					0	0	0			REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.79296875	2	524.792689	1047.57083	1.7796	0.00093391	-1.0923	-0.00057324	0.68726	0.00036067	524.7920441430041	26.399	0.51077	26.399	26.117	26.628	0					18	10	2	0	0	0	0.30268	1	9417	9417		50.025	10.772	1	1084100	+		9545	19728	5798	5827	9706	9706					0.04894266298833827
EMKDLGGDLP	10	Unmodified	_EMKDLGGDLP_					0	0	0			REV__PARP14|p.N415Mfs*3|1|0.05|ENSG00000173193|chr3:122699793-122699793|A/-|frameshift_variant	REV__PARP14|p.N415Mfs*3|1|0.05|ENSG00000173193|chr3:122699793-122699793|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7606201171875	2	537.760432	1073.50631	0.69561	0.00037407	-0.76244	-0.00041001	-0.066829	-3.5938E-05	537.760124075806	38.582	0.26282	38.582	38.449	38.712	0					12	5	3	0	0	0	0.23612	1	15176	15176		75.043	0.8783	1	212520	+		9546	16497	5799	5828	9707	9707					-0.02750217253583287
EMKDTKIASL	10	Oxidation (M)	_EM(Oxidation (M))KDTKIASL_		EM(1)KDTKIASL		EM(85)KDTKIASL	0	0	1		ENSG00000187672|ENST00000288221|ERC2;ERC2|p.D867Mfs*31|1|0.61|ENSG00000187672|chr3:55734885-55734885|T/-|frameshift_variant	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.3015747070312	2	576.302464	1150.59037	1.697	0.00097797	-2.5826	-0.0014884	-0.88566	-0.00051041	576.3010729123058	24.315	0.26706	24.315	24.213	24.48	0					15	5	4	0	0	0	0.16075	1	8386	8386		84.817	10.652	1	1334800			9547	7208	5800	5829	9708	9708		290			0.02110313843286349
EMKDVTTKL	9	Unmodified	_EMKDVTTKL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7869873046875	2	532.78645	1063.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.646	1	37.646	37.146	38.146	0								0	0	0	0.069826	1	14286	14286		64.207	0	1				9548	5134;11594	5801	5830	9709	9709					0.029109461601592557
EMKRVRNK	8	Oxidation (M)	_EM(Oxidation (M))KRVRNK_		EM(1)KRVRNK		EM(58)KRVRNK	0	0	1		ENSG00000172465|ENST00000372625|TCEAL1	ENSG00000172465|ENST00000372625|TCEAL1	ENSG00000172465|ENST00000372625|TCEAL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.32763671875	2	538.8033	1075.59205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.925	1	17.925	17.425	18.425	0								0	0	0	1.7419	1	4573	4573		57.811	8.2752	1				9549	6364	5802	5831	9710	9710		260			0.05727412442570312
EMKSAMRKL	9	Oxidation (M)	_EM(Oxidation (M))KSAMRKL_		EM(1)KSAMRKL		EM(39)KSAM(-39)RKL	0	0	1		OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant;ENSG00000181958|ENST00000641526|OR4A15;nc|ENSG00000181958|Q8NGL6|OR4A15	OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant	OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.2957763671875	2	555.293919	1108.57328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.811	1	18.811	18.311	19.311	0								0	0	0	0.21054	1	4981	4981		49.442	8.6634	2				9550	6872	5803	5832	9711	9711		279			0.023341147565133724
EMLAVSKLY	9	Unmodified	_EMLAVSKLY_					0	0	0		ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.287353515625	2	527.286085	1052.55762	3.472	0.0018307	-0.80747	-0.00042577	2.6645	0.001405	527.2856701940535	45.399	0.13224	45.399	45.341	45.473	0					9	5	2	0	0	0	0.36892	1	18183	18183		44.377	1.9027	1	53328			9551	2730	5804	5833	9712	9712					0.033441515111235276
EMLEAFKCAI	10	Unmodified	_EMLEAFKCAI_					0	0	0			REV__ENST00000419888.1_1_20:18763070-18763415:-|nuORF	REV__ENST00000419888.1_1_20:18763070-18763415:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	577.7804565429688	2	577.782853	1153.55115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.9	1	34.9	34.4	35.4	0								0	0	0	0.28704	1	12389	12389		52.937	1.6012	1		+		9552	19065	5805	5834	9713	9713					-0.01948109711906909
EMLFEKAK	8	Oxidation (M)	_EM(Oxidation (M))LFEKAK_		EM(1)LFEKAK		EM(61)LFEKAK	0	0	1			REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	REV__ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.26214599609375	2	506.26261	1010.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.791	1	25.791	25.291	26.291	0								0	0	0	1.7419	1	8069	8069		60.972	11.53	1		+		9553	13866	5806	5835	9714	9714		523			0.005832919599697561
EMMEEDLQ	8	Unmodified	_EMMEEDLQ_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP;ENST00000573672.1_1_16:3817649-3820675:-|nuORF	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.70166015625	2	512.701725	1023.3889	-0.45784	-0.00023473	-0.76563	-0.00039254	-1.2235	-0.00062727	512.7012748823468	39.226	0.18368	39.226	39.143	39.327	0					10	6	2	0	0	0	0.77246	1	15408	15408		24.203	2.5004	1	93573			9554	691	5807	5836	9715	9715					-0.12186118184706629
EMMKVVQVY	9	Unmodified	_EMMKVVQVY_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;ENST00000478032.1_1_1:114940480-114942198:-|nuORF	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.7850952148438	2	563.785395	1125.55624	1.7498	0.00098648	-1.94	-0.0010937	-0.19022	-0.00010724	563.7846371521831	39.302	0.23079	39.302	39.157	39.387	0					8	5	2	0	0	0	0.062676	1	15507	15507		90.777	0	1	84953			9555	7450	5808	5837	9716	9716					-0.0015180584928202734
EMNKHQSVY	9	Unmodified	_EMNKHQSVY_					0	0	0			REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.2626342773438	2	568.263673	1134.51279	0.25379	0.00014422	-2.2953	-0.0013043	-2.0415	-0.0011601	568.262442063955	27.001	0.20835	27.001	26.895	27.104	0					5	4	2	0	0	0	0.41113	1	9745	9745		40.778	1.5253	1	94673	+		9556	21785	5809	5838	9717	9717					-0.049082793022080295
EMNRQPPLF	9	Unmodified	_EMNRQPPLF_					0	0	0			REV__ENSG00000138002|ENST00000260570|IFT172	REV__ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.2884521484375	2	566.284408	1130.55426	3.4705	0.0019653	4.0281	0.0022811	7.4986	0.0042463	566.2867442614431	29.481	0.20797	29.481	29.375	29.583	0					7	4	2	0	0	0	0.13519	1	10816	10816		71.296	1.6681	1	325110	+		9557	14951	5810	5839	9718	9718					-0.0057909854290301155
EMRAMWKEGR	10	2 Oxidation (M)	_EM(Oxidation (M))RAM(Oxidation (M))WKEGR_		EM(1)RAM(1)WKEGR		EM(57)RAM(57)WKEGR	0	0	2			REV__ENST00000497424.5_1_20:3906677-3906761:+|nuORF	REV__ENST00000497424.5_1_20:3906677-3906761:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.54071044921875	3	442.541151	1324.60162	-0.51016	-0.00022577	-0.46001	-0.00020357	-0.97017	-0.00042934	442.54094313490936	21.347	0.26366	21.347	21.19	21.454	0					12	5	3	0	0	0	0.39647	1	6948	6948		56.632	13.214	1	864300	+		9558	19785	5811	5840	9719	9719		722;723			-0.047691873342046165
EMRSAPVSL	9	Unmodified	_EMRSAPVSL_					0	0	0			REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2573547363281	2	495.257859	988.501166	-0.064345	-3.1868E-05	-0.88871	-0.00044014	-0.95305	-0.00047201	495.2574787360675	40.582	0.10934	40.582	40.53	40.639	0					10	6	2	0	0	0	0.44593	1	13107	13107		37.812	0.65241	1	66436	+		9559	20383	5812	5841	9720	9720					0.006455236744614012
EMSKTALQF	9	Unmodified	_EMSKTALQF_					0	0	0		ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7655639648438	2	527.765517	1053.51648	0.27353	0.00014436	-2.0015	-0.0010563	-1.7279	-0.00091194	527.764407177122	38.821	0.25366	38.821	38.707	38.961	0					35	14	3	0	0	0	0.41113	1	13057	13057		40.778	0	1	312130			9560	6437	5813	5842	9721	9721					-0.008136095283816758
EMSPCAII	8	Carbamidomethyl (C),Oxidation (M)	_EM(Oxidation (M))SPC(Carbamidomethyl (C))AII_	EMSPC(1)AII	EM(1)SPCAII	EMSPC(45)AII	EM(45)SPCAII	0	1	1			REV__ENST00000486940.2_1_13:46090326-46105393:+|nuORF	REV__ENST00000486940.2_1_13:46090326-46105393:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7140808105469	2	468.711896	935.409239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.583	1	43.583	43.083	44.083	0								0	0	0	1.7419	1	17444	17444		44.531	7.5026	1		+		9561	14852	5814	5843	9722	9722	547	560			-0.061049027342505724
EMSQPRATL	9	Unmodified	_EMSQPRATL_					0	0	0			REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7592163085938	2	516.760766	1031.50698	0.20855	0.00010777	-1.9886	-0.0010276	-1.78	-0.00091985	516.7591704480816	22.846	0.46207	22.846	22.739	23.201	0					26	9	4	0	0	0	0.16002	1	7645	7645		66.429	5.4573	1	788840	+		9562	14925	5815	5844	9723	9723					-0.007513778138672933
EMTINMLNA	9	Unmodified	_EMTINMLNA_					0	0	0		ANKRD18A|p.K865Rfs*16|1|0.35|ENSG00000180071|chr9:38577200-38577200|T/-|frameshift_variant;ENSG00000180071|ENST00000399703|ANKRD18A;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENSG00000230453|ENST00000684830|ANKRD18B	ANKRD18A|p.K865Rfs*16|1|0.35|ENSG00000180071|chr9:38577200-38577200|T/-|frameshift_variant	ANKRD18A|p.K865Rfs*16|1|0.35|ENSG00000180071|chr9:38577200-38577200|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7416381835938	2	518.743728	1035.4729	-1.3902	-0.00072115	-1.8433	-0.0009562	-3.2335	-0.0016774	518.742547601633	14.088	0.071599	14.088	14.043	14.115	0					5	3	2	0	0	0	0.47038	1	2936	2936		35.618	0	1	103120			9563	155	5816	5845	9724	9724					-0.043415422971520456
EMTSIFSLVE	10	Oxidation (M)	_EM(Oxidation (M))TSIFSLVE_		EM(1)TSIFSLVE		EM(49)TSIFSLVE	0	0	1			REV__FASTKD3|p.K143Gfs*3|1|0.17|ENSG00000124279|chr5:7867656-7867657|TT/-|frameshift_variant	REV__FASTKD3|p.K143Gfs*3|1|0.17|ENSG00000124279|chr5:7867656-7867657|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.2832641601562	2	586.281197	1170.54784	0.088468	5.1867E-05	4.1032	0.0024057	4.1917	0.0024575	586.7852134467408	39.793	0.14242	39.793	39.738	39.88	0					8	5	2	0	0	0	0.46215	1	15152	15152		49.442	10.635	1	58939	+		9564	14389	5817	5846	9725	9725		546			-0.030610812849545255
EMVHEQVDK	9	Unmodified	_EMVHEQVDK_					0	0	0			REV__ENSG00000166398|ENST00000299505|GARRE1	REV__ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7640380859375	2	557.763506	1113.51246	-0.17646	-9.8421E-05	1.6924	0.00094397	1.516	0.00084555	557.7643683556217	27.939	0.21078	27.939	27.831	28.042	0					9	4	3	0	0	0	0.24334	1	10189	10189		56.434	1.7114	1	291330	+		9565	16115	5818	5847	9726	9726					-0.039756990220894295
EMVHIQLTD	9	Oxidation (M)	_EM(Oxidation (M))VHIQLTD_		EM(1)VHIQLTD		EM(60)VHIQLTD	0	0	1			REV__nc|ENSG00000269335|Q9Y6K9-3|IKBKG	REV__nc|ENSG00000269335|Q9Y6K9-3|IKBKG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7647705078125	2	551.265881	1100.51721	-1.348	-0.00074311	-2.2677	-0.0012501	-3.6157	-0.0019932	551.7659762157557	35.99	0.087727	35.99	35.948	36.036	0					6	3	2	0	0	0	0.21263	1	12869	12869		60.118	6.7668	1	43033	+		9566	17803	5819	5848	9727	9727		664			-0.029028148793031505
EMVLLELI	8	Unmodified	_EMVLLELI_					0	0	0			REV__ZNF174|p.R212Efs*2|1|0.17|ENSG00000103343|chr16:3408324-3408324|C/-|frameshift_variant	REV__ZNF174|p.R212Efs*2|1|0.17|ENSG00000103343|chr16:3408324-3408324|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2791442871094	2	480.277729	958.540905	0.93109	0.00044718	0.63987	0.00030732	1.571	0.0007545	480.27780132342394	35.322	0.67252	35.322	34.913	35.586	0					22	13	3	0	0	0	0.34985	1	13614	13614		76.847	0.67695	1	755680	+		9567	13675	5820	5849	9728	9728					0.05997650625170081
EMVMLVAPF	9	Unmodified	_EMVMLVAPF_					0	0	0		ENST00000437374.5_1_10:1068715-1089667:+|nuORF;ENST00000428780.2_1_10:1068608-1089667:+|nuORF	ENST00000437374.5_1_10:1068715-1089667:+|nuORF	ENST00000437374.5_1_10:1068715-1089667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7643432617188	2	518.763932	1035.51331	0.056435	2.9276E-05	1.2243	0.00063512	1.2807	0.0006644	518.7644612493333	21.348	0.48776	21.348	21.123	21.61	0					34	11	4	0	0	0	0.45511	1	6696	6696		37.028	5.0736	1	866380			9568	9469	5821	5850	9729	9729					-0.0030257590674409585
EMWGPFIPLS	10	Unmodified	_EMWGPFIPLS_					0	0	0			REV__nc|ENSG00000138835|P49796|RGS3	REV__nc|ENSG00000138835|P49796|RGS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.7918701171875	2	588.791535	1175.56852	0.16239	9.5614E-05	0.15208	8.9543E-05	0.31447	0.00018516	588.7914277914524	42.268	0.43254	42.268	42.021	42.453	0					37	22	2	0	0	0	0.63073	1	16002	16002		30.504	0.18592	1	95830	+		9569	21041	5822	5851	9730	9730					-0.012244461145883179
EMWNNLNDSEK	11	Oxidation (M)	_EM(Oxidation (M))WNNLNDSEK_		EM(1)WNNLNDSEK		EM(44)WNNLNDSEK	0	0	1		ENSG00000029993|ENST00000325307|HMGB3	ENSG00000029993|ENST00000325307|HMGB3	ENSG00000029993|ENST00000325307|HMGB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	698.2978515625	2	698.295898	1394.57724	2.2645	0.0015813	0.62134	0.00043388	2.8858	0.0020152	698.2965641062234	20.071	0.42007	20.071	19.859	20.28	0					16	8	3	0	0	0	0.49805	1	6414	6414		44.377	10.205	1	893500			9570	1144	5823	5852	9731	9731		52			-0.10426169006746022
EMYKILSQ	8	Unmodified	_EMYKILSQ_					0	0	0			REV__ENSG00000106560|ENST00000223293|GIMAP2	REV__ENSG00000106560|ENST00000223293|GIMAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2641906738281	2	506.26261	1010.51067	1.0872	0.00055043	1.7976	0.00091008	2.8849	0.0014605	506.2638239027883	37.245	0.30552	37.245	37.087	37.392	0					25	9	4	0	0	0	0.37144	1	14559	14559		74.255	2.3776	1	1500900	+		9571	13828	5824	5853	9732	9732					0.005832919599697561
EMYKILSQK	9	Unmodified	_EMYKILSQK_					0	0	0			REV__ENSG00000106560|ENST00000223293|GIMAP2	REV__ENSG00000106560|ENST00000223293|GIMAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.5434265136719	3	380.542487	1138.60563	0.82477	0.00031386	0.77072	0.00029329	1.5955	0.00060715	380.5431032471385	31.128	0.38818	31.128	30.955	31.343	0					22	9	3	0	0	0	0.28897	1	11312	11312		50.034	5.6563	1	786500	+		9572	13828	5825	5854	9733	9733					0.04187225431155639
ENAEAYLGK	9	Unmodified	_ENAEAYLGK_					0	0	0		ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.74517822265625	2	497.745639	993.476725	-0.026208	-1.3045E-05	-0.49896	-0.00024836	-0.52517	-0.0002614	497.74527533459894	29.028	0.15976	29.028	28.927	29.087	0					5	3	2	0	0	0	0.24334	1	10695	10695		56.434	4.906	1	111920			9573	9584	5826	5855	9734	9734					-0.020274132074177942
ENAKLCNTL	9	Unmodified	_ENAKLCNTL_					0	0	0		ENST00000261247.13_1_14:59970910-59971024:+|nuORF	ENST00000261247.13_1_14:59970910-59971024:+|nuORF	ENST00000261247.13_1_14:59970910-59971024:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.75653076171875	2	503.255317	1004.49608	-0.052926	-2.6635E-05	-2.9978	-0.0015087	-3.0507	-0.0015353	503.25369521139015	32.07	0.10685	32.07	32.015	32.122	0					7	4	2	0	0	0	0.38666	1	10338	10338		42.864	7.246	1	73474			9574	8294	5827	5856	9735	9735					-0.005987801881701671
ENASERPIK	9	Unmodified	_ENASERPIK_					0	0	0			REV__tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	REV__tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.7701416015625	2	522.277638	1042.54072	0.82125	0.00042892	-3.6744	-0.0019191	-2.8532	-0.0014901	522.2752438406405	24.265	0.13598	24.265	24.207	24.343	0					6	4	2	0	0	0	0.30841	1	7135	7135		49.536	8.7579	1	91566	+		9575	21822	5828	5857	9736	9736					0.021153669495106442
ENASLREKL	9	Unmodified	_ENASLREKL_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2955322265625	2	530.293288	1058.57202	3.4383	0.0018233	0.9821	0.0005208	4.4204	0.0023441	530.293649455254	44.712	0.32996	44.712	44.606	44.936	0					29	14	3	0	0	0	0.19952	1	17897	17897		61.691	5.2575	1	233270			9576	6174	5829	5858	9737	9737					0.04507939983614051
ENAVKQPEK	9	Unmodified	_ENAVKQPEK_					0	0	0			REV__nc|ENSG00000135525|Q14244-5|MAP7	REV__nc|ENSG00000135525|Q14244-5|MAP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7649536132812	2	521.780013	1041.54547	-0.11683	-6.0961E-05	0.20749	0.00010827	0.090661	4.7305E-05	521.7802354564507	12.422	0.38045	12.422	12.208	12.588	0					21	9	3	0	0	0	0.46194	1	2706	2706		36.447	2.2742	1	468620	+		9577	14808	5830	5859	9738	9738					0.026362510922808724
ENAVLPLCFV	10	Unmodified	_ENAVLPLCFV_					0	0	0		ENSG00000184992|ENST00000341446|BRI3BP	ENSG00000184992|ENST00000341446|BRI3BP	ENSG00000184992|ENST00000341446|BRI3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.793701171875	2	552.791535	1103.56852	-1.2456	-0.00068856	4.0648	0.002247	2.8192	0.0015584	552.7944176210304	29.063	0.15913	29.063	28.953	29.112	0					8	4	2	0	0	0	0.34667	1	9744	9744		62.107	19.633	1	62917			9578	7051	5831	5860	9739	9739					0.020875538853943
ENDLKVNSVVI	11	Unmodified	_ENDLKVNSVVI_					0	0	0		tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	615.340576171875	2	615.340435	1228.66632	-0.71569	-0.00044039	1.6382	0.001008	0.92249	0.00056765	615.3414689362163	41.006	0.09729	41.006	40.96	41.057	0					6	4	2	0	0	0	0.32407	1	15603	15603		59.931	3.2097	1	90822			9579	22724	5832	5861	9740	9740					0.061130340151066775
ENDMLGLKR	9	Unmodified	_ENDMLGLKR_					0	0	0			REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2802734375	2	538.281866	1074.54918	0.81311	0.00043768	-3.416	-0.0018388	-2.6029	-0.0014011	538.2803016871386	24.929	0.14083	24.929	24.882	25.023	0					7	4	2	0	0	0	0.33044	1	7432	7432		47.657	3.2801	1	79294	+		9580	14301	5833	5862	9741	9741					0.014885975944935126
ENDMLGLKR	9	Unmodified	_ENDMLGLKR_					0	0	0			REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2803344726562	2	538.281866	1074.54918	0.23286	0.00012534	-2.5391	-0.0013668	-2.3062	-0.0012414	538.280404420662	25.194	0.44405	25.194	24.93	25.374	0					11	6	3	0	0	0	0.12834	1	8584	8584		72.879	4.0331	1	529870	+		9581	14301	5833	5862	9742	9742					0.014885975944935126
ENEAQKNNT	9	Unmodified	_ENEAQKNNT_					0	0	0		RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant	RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant	RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2396240234375	2	524.238709	1046.46287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.034	1	16.034	15.534	16.534	0								0	0	0	0.27939	1	3767	3767		39.253	0.44669	1				9582	12010	5834	5863	9743	9743					-0.058506907065066116
ENEEALQFLA	10	Unmodified	_ENEEALQFLA_					0	0	0			REV__nc|ENSG00000114439|Q8WY36-3|BBX	REV__nc|ENSG00000114439|Q8WY36-3|BBX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.2837524414062	2	582.282586	1162.55062	0.56497	0.00032897	0.62257	0.00036251	1.1875	0.00069148	582.2828612671382	28.202	0.15105	28.202	28.145	28.296	0					6	3	2	0	0	0	0.4758	1	9341	9341		47.96	0	1	132680	+		9583	20981	5835	5864	9744	9744					-0.02415489835743756
ENEFDLEQ	8	Unmodified	_ENEFDLEQ_					0	0	0			REV__ENST00000529654.5_1_8:145615920-145616956:+|nuORF	REV__ENST00000529654.5_1_8:145615920-145616956:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2164306640625	2	512.216911	1022.41927	0.0043126	2.209E-06	-0.71957	-0.00036858	-0.71526	-0.00036637	512.2164893053631	13.741	0.088379	13.741	13.694	13.782	0					4	2	2	0	0	0	0.67836	1	3203	3203		36.447	2.2742	1	459490	+		9584	16493	5836	5865	9745	9745					-0.09104300203659932
ENEFGLTSL	9	Unmodified	_ENEFGLTSL_					0	0	0		HEG1|p.P916Lfs*2|1|0.07|ENSG00000173706|chr3:125012832-125012832|G/-|frameshift_variant;nc|ENSG00000173706|Q9ULI3-2|HEG1;HEG1|p.S1105Qfs*21|1|0.12|ENSG00000173706|chr3:125002300-125002300|A/-|frameshift_variant;ENSG00000173706|ENST00000311127|HEG1;HEG1|p.H603Sfs*5|1|0.29|ENSG00000173706|chr3:125013772-125013773|-/A|frameshift_variant	HEG1|p.P916Lfs*2|1|0.07|ENSG00000173706|chr3:125012832-125012832|G/-|frameshift_variant	HEG1|p.P916Lfs*2|1|0.07|ENSG00000173706|chr3:125012832-125012832|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.24554443359375	2	505.245472	1008.47639	-0.071142	-3.5944E-05	-0.329	-0.00016623	-0.40014	-0.00020217	505.24537106330115	26.789	0.19963	26.789	26.708	26.908	0					16	7	3	0	0	0	0.071197	1	8179	8179		87.754	0.057861	1	281280			9585	6445	5837	5866	9746	9746					-0.027508329272677656
ENEIRIAY	8	Unmodified	_ENEIRIAY_					0	0	0		ENSG00000203970|ENST00000371148|DEFB110	ENSG00000203970|ENST00000371148|DEFB110	ENSG00000203970|ENST00000371148|DEFB110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.25970458984375	2	504.261456	1006.50836	-0.033088	-1.6685E-05	-2.2528	-0.001136	-2.2859	-0.0011527	504.2610914387175	25.406	0.19344	25.406	25.31	25.503	0					6	4	2	0	0	0	0.66095	1	8064	8064		45.952	27.628	1	88791			9586	7664	5838	5867	9747	9747					0.005365795465081646
ENFFLVLGIDA	11	Unmodified	_ENFFLVLGIDA_					0	0	0		ENST00000549584.5_1_14:105453158-105465563:+|nuORF;ENSG00000140104|ENST00000547315|CLBA1	ENST00000549584.5_1_14:105453158-105465563:+|nuORF	ENST00000549584.5_1_14:105453158-105465563:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	619.3294677734375	2	619.326796	1236.63904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.228	1	34.228	33.728	34.728	0								0	0	0	0.4311	1	11532	11532		41.427	17.904	1				9587	4367	5839	5868	9748	9748					0.03018550474712356
ENFQLQLI	8	Unmodified	_ENFQLQLI_					0	0	0		ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7749328613281	2	502.7742	1003.53385	-0.048145	-2.4206E-05	0.01635	8.2203E-06	-0.031795	-1.5986E-05	502.7744866491329	34.783	0.33886	34.783	34.603	34.941	0					20	15	2	0	0	0	0.58597	1	11348	11348		40.573	0	1	135080			9588	5189	5840	5869	9749	9749					0.03222054068965008
ENFQYYVELEW	11	Unmodified	_ENFQYYVELEW_					0	0	0		L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|265|2|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|265|2|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|265|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2309875488281	3	507.229513	1518.66671	0.16285	8.2602E-05	1.4395	0.00073015	1.6023	0.00081275	507.23035742791933	21.324	0.11637	21.324	21.225	21.341	0					8	2	4	0	0	0	0.78029	1	7050	7050		19.263	5.1767	1	219280			9589	11300	5841	5870	9750	9750					-0.07187591055708253
ENFRHQLED	9	Unmodified	_ENFRHQLED_					0	0	0		RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant	RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.2750854492188	2	594.275626	1186.5367	-1.8064	-0.0010735	1.4258	0.00084734	-0.3806	-0.00022618	594.2766888772949	29.965	0.12808	29.965	29.89	30.018	0					8	3	3	0	0	0	0.22837	1	10153	10153		58.23	2.7257	1	79312			9590	6985	5842	5871	9751	9751					-0.049107225442185154
ENFRLKSY	8	Unmodified	_ENFRLKSY_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7782592773438	2	528.777274	1055.53999	0.50902	0.00026916	0.12274	6.4901E-05	0.63176	0.00033406	528.7775698220702	33.205	0.35616	33.205	33.104	33.46	0					23	14	2	0	0	0	0.62915	1	10768	10768		42.396	0	1	98907			9591	2831	5843	5872	9752	9752					0.01444572300465552
ENFRNLLL	8	Unmodified	_ENFRNLLL_					0	0	0		ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.78948974609375	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.909	1	41.909	41.409	42.409	0								0	0	0	1.7419	1	16696	16696		31.955	0	1				9592	1329	5844	5873	9753	9753					0.052651626801548446
ENFSINFK	8	Unmodified	_ENFSINFK_					0	0	0			REV__tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1	REV__tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.752197265625	2	499.750724	997.486896	2.9183	0.0014584	-0.084186	-4.2072E-05	2.8341	0.0014164	499.75069707722105	27.128	0.4225	27.128	27.019	27.441	0					12	8	2	0	0	0	0.46013	1	9684	9684		64.207	11.271	1	1629000	+		9593	21936	5845	5874	9754	9754					-0.011948054821800724
ENGNEEEQ	8	Unmodified	_ENGNEEEQ_					0	0	0			REV__nc|ENSG00000164334|A1A519-3|FAM170A	REV__nc|ENSG00000164334|A1A519-3|FAM170A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.6803894042969	2	474.680693	947.346833	0.6126	0.00029079	-0.63252	-0.00030025	-0.019918	-9.4546E-06	474.6802572973826	49.608	0.49107	49.608	49.408	49.899	0					30	17	2	0	0	0	0.79294	1	18607	18607		15.642	0.77694	1	174960	+		9594	15987	5846	5875	9755	9755					-0.12894634277222394
ENHKIRIE	8	Unmodified	_ENHKIRIE_					0	0	0		ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7883911132812	2	519.788173	1037.56179	0.30678	0.00015946	0.34322	0.0001784	0.65	0.00033786	519.7883397195366	13.071	0.19842	13.071	12.978	13.176	0					6	4	2	0	0	0	0.62915	1	2954	2954		42.396	0	1	315850			9595	10472	5847	5876	9756	9756					0.04451377049053917
ENIEFFGGY	9	Unmodified	_ENIEFFGGY_					0	0	0		VCAM1|p.L453Ffs*23|1|0.35|ENSG00000162692|chr1:100731346-100731347|-/T|frameshift_variant	VCAM1|p.L453Ffs*23|1|0.35|ENSG00000162692|chr1:100731346-100731347|-/T|frameshift_variant	VCAM1|p.L453Ffs*23|1|0.35|ENSG00000162692|chr1:100731346-100731347|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2417602539062	2	538.24019	1074.46583	0.23282	0.00012531	2.3383	0.0012586	2.5711	0.0013839	538.2414179818152	24.486	0.39813	24.486	24.388	24.786	0					16	9	3	0	0	0	0.51817	1	8261	8261		30.504	1.3541	1	856140			9596	23101	5848	5877	9757	9757					-0.06842815581694595
ENIHSAVKNM	10	Unmodified	_ENIHSAVKNM_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.78369140625	2	571.784773	1141.55499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.458	1	28.458	27.958	28.958	0								0	0	0	0.4201	1	9448	9448		17.468	1.8262	1		+		9597	15624	5849	5878	9758	9758					-0.010123038938445461
ENILTGAKK	9	Unmodified	_ENILTGAKK_					0	0	0		nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.28729248046875	2	487.287474	972.560395	-0.70064	-0.00034141	0.61609	0.00030021	-0.084544	-4.1197E-05	487.28768977091033	17.38	0.15036	17.38	17.285	17.435	0					8	3	3	0	0	0	0.16002	1	5160	5160		66.429	7.6473	1	747430			9598	1923	5850	5879	9759	9759					0.07301742960282809
ENISKRGGI	9	Unmodified	_ENISKRGGI_					0	0	0		tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2747802734375	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.398	1	16.398	15.898	16.898	0								0	0	0	0.091069	1	4435	4435		74.255	1.3758	1				9599	22864	5851	5880	9760	9760					0.047876881577167296
ENKDTRQNV	9	Unmodified	_ENKDTRQNV_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.2758178710938	2	552.275626	1102.5367	0.24743	0.00013665	0.88381	0.00048811	1.1312	0.00062476	552.2761094832243	17.961	0.12878	17.961	17.869	17.998	0					5	3	2	0	0	0	0.21263	1	4620	4620		60.118	1.8883	1	224900	+		9600	14853	5852	5881	9761	9761					-0.010467225442198469
ENLINHQR	8	Unmodified	_ENLINHQR_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2704467773438	2	512.270147	1022.52574	3.1224	0.0015995	-1.5435	-0.00079067	1.579	0.00080886	512.2692868410118	13.696	0.34997	13.696	13.498	13.848	0					13	7	3	0	0	0	0.7126	1	3253	3253		31.955	0.42505	1	254820			9601	1918	5853	5882	9762	9762					0.01537919872191651
ENLLVSETTD	10	Unmodified	_ENLLVSETTD_					0	0	0		ENST00000491683.6_1_X:1413309-1414421:+|nuORF	ENST00000491683.6_1_X:1413309-1414421:+|nuORF	ENST00000491683.6_1_X:1413309-1414421:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7744140625	2	560.772051	1119.52955	3.4687	0.0019452	1.6605	0.00093118	5.1292	0.0028763	560.7729974907294	51.163	0.12891	51.163	51.081	51.21	0					11	7	2	0	0	0	0.57211	1	20061	20061		37.508	0.34906	1	55428			9602	10075	5854	5883	9763	9763					-0.02543499935291038
ENLQAKGMK	9	Unmodified	_ENLQAKGMK_					0	0	0		tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2708435058594	2	509.771134	1017.52771	1.3562	0.00069137	-1.0793	-0.0005502	0.27692	0.00014117	509.77070681927	42.829	0.37928	42.829	42.581	42.96	0					25	11	3	0	0	0	0.16806	1	17050	17050		58.782	0	1	284370			9603	22761	5855	5884	9764	9764					0.019652125657898978
ENLREELA	8	Unmodified	_ENLREELA_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7519836425781	2	487.251089	972.487624	-0.22923	-0.00011169	-0.15411	-7.509E-05	-0.38334	-0.00018678	487.25099595840925	22.381	0.59314	22.381	22.157	22.75	0					33	13	3	0	0	0	0.67394	1	6775	6775		37.159	6.6555	1	890120		+	9604	659	5856	5885	9765	9765					0.0002798916685833319
ENLRFRSR	8	Unmodified	_ENLRFRSR_					0	0	0		sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7987670898438	2	539.299239	1076.58392	1.5608	0.00084172	-1.739	-0.00093785	-0.17824	-9.6123E-05	539.2989401502163	27.22	0.41964	27.22	27.125	27.545	0					37	15	3	0	0	0	0.64746	1	8446	8446		31.53	3.6476	1	388310			9605	22459	5857	5886	9766	9766					0.0486960151747553
ENLRRPVV	8	Unmodified	_ENLRRPVV_					0	0	0		sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	328.1978759765625	3	328.197931	981.571963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.057	1	24.057	23.557	24.557	0								0	0	0	1.7419	1	7046	7046		10.866	0.6003	1				9606	22475	5858	5887	9767	9767					0.08043984774280943
ENMHREGKI	9	Oxidation (M)	_ENM(Oxidation (M))HREGKI_		ENM(1)HREGKI		ENM(72)HREGKI	0	0	1		SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant;nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3	SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant	SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.273681640625	2	565.274572	1128.53459	-1.1179	-0.00063194	0.45882	0.00025936	-0.65911	-0.00037258	565.2747859127986	23.551	0.29578	23.551	23.418	23.713	0					14	7	3	0	0	0	0.13267	1	7197	7197		71.877	7.6702	1	227810			9607	1614	5859	5888	9768	9768		76			-0.02453474553635715
ENNDQRLAV	9	Unmodified	_ENNDQRLAV_					0	0	0		ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5;nc|ENSG00000082512|O00463-3|TRAF5	ENSG00000082512|ENST00000261464|TRAF5	ENSG00000082512|ENST00000261464|TRAF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7657470703125	2	529.764894	1057.51524	1.2195	0.00064605	0.26154	0.00013856	1.481	0.0007846	529.7653797839608	16.109	0.062904	16.109	16.069	16.132	0					4	2	2	0	0	0	0.19605	1	3750	3750		62.107	3.3255	1	56925			9608	1678	5860	5889	9769	9769					-0.011221075729054064
ENNEVKKLI	9	Unmodified	_ENNEVKKLI_					0	0	0			REV__tr|U7T8E8|U7T8E8_FUSNUTIGR00370familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00030PE=4SV=1	REV__tr|U7T8E8|U7T8E8_FUSNUTIGR00370familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00030PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8121337890625	2	543.811313	1085.60807	0.32252	0.00017539	0.20163	0.00010965	0.52415	0.00028504	543.811659846119	37.222	0.18668	37.222	37.109	37.296	0					8	5	2	0	0	0	0.28897	1	14537	14537		51.193	17.02	1	100740	+		9609	22220	5861	5890	9770	9770					0.06869397160471635
ENNGFDRFIDL	11	Unmodified	_ENNGFDRFIDL_					0	0	0			REV__ENST00000493688.5_1_20:56826891-56884481:-|nuORF	REV__ENST00000493688.5_1_20:56826891-56884481:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2143859863281	3	447.214086	1338.62043	0.1296	5.7959E-05	0.64107	0.0002867	0.77067	0.00034466	447.2144054796696	22.212	0.059666	22.212	22.165	22.225	0					4	2	2	0	0	0	0.79309	1	6243	6243		16.53	0.6092	1	45641	+		9610	17936	5862	5891	9771	9771					-0.03533611167131312
ENNPLGSL	8	Unmodified	_ENNPLGSL_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2164611816406	2	422.213975	842.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.262	1	40.262	39.762	40.762	0								0	0	0	1.7419	1	15345	15345		44.117	1.7207	1				9611	2786	5863	5892	9772	9772					-0.01411353924663672
ENPASWVVAW	10	Unmodified	_ENPASWVVAW_					0	0	0		ENST00000326956.11_1_1:54691347-54691953:-|nuORF	ENST00000326956.11_1_1:54691347-54691953:-|nuORF	ENST00000326956.11_1_1:54691347-54691953:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7852172851562	2	579.782556	1157.55056	3.2512	0.001885	1.5251	0.00088422	4.7763	0.0027692	579.7834975122339	25.693	0.35008	25.693	25.633	25.983	0					13	5	3	0	0	0	0.46128	1	9039	9039		49.536	7.1399	1	1171000			9612	8652	5864	5893	9773	9773					-0.02191445045104956
ENPGSIANL	9	Unmodified	_ENPGSIANL_					0	0	0			REV__ENSG00000183431|ENST00000373019|SF3A3	REV__ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7320861816406	2	457.732532	913.45051	2.4962	0.0011426	-2.344	-0.0010729	0.1522	6.9669E-05	457.731254214565	31.706	0.96714	31.706	31.488	32.455	0					36	19	3	0	0	0	0.098791	1	11961	11961		79.713	2.395	1	435370	+		9613	16935	5865	5894	9774	9774					-0.009676823788936417
ENPKEKRP	8	Unmodified	_ENPKEKRP_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L;ENST00000371361.3_1_10:96117968-96121450:-|nuORF;ENST00000461562.1_1_10:96121308-96121450:-|nuORF;ENST00000461562.1_1_10:96121274-96122595:-|nuORF;ENST00000463649.5_1_10:96117838-96122595:-|nuORF	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2744140625	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.928	1	13.928	13.428	14.428	0								0	0	0	1.7419	1	3503	3503		27.882	0	1				9614	6407	5866	5895	9775	9775					0.036836881577073655
ENPLWTCL	8	Carbamidomethyl (C)	_ENPLWTC(Carbamidomethyl (C))L_	ENPLWTC(1)L		ENPLWTC(66)L		0	1	0		nc|ENSG00000155307|Q9NSI8-3|SAMSN1	nc|ENSG00000155307|Q9NSI8-3|SAMSN1	nc|ENSG00000155307|Q9NSI8-3|SAMSN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7457885742188	2	516.744585	1031.47462	1.4882	0.00076904	0.93205	0.00048163	2.4203	0.0012507	516.7451081774708	15.23	0.45793	15.23	14.927	15.385	0					23	9	3	0	0	0	0.44433	1	4117	4117		65.803	65.803	1	588920			9615	11593	5867	5896	9776	9776	455				-0.039861652169065565
ENPSAGNKLL	10	Unmodified	_ENPSAGNKLL_					0	0	0			REV__nc|ENSG00000029534|P16157-2|ANK1	REV__nc|ENSG00000029534|P16157-2|ANK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7811279296875	2	521.780013	1041.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.049	1	12.049	11.549	12.549	0								0	0	0	0.38879	1	2315	2315		33.922	1.9668	1		+		9616	12963	5868	5897	9777	9777					0.026362510922808724
ENPVVVVVK	9	Unmodified	_ENPVVVVVK_					0	0	0			REV__ENSG00000214753|ENST00000301785|HNRNPUL2	REV__ENSG00000214753|ENST00000301785|HNRNPUL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.8009033203125	2	491.800217	981.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.945	1	30.945	30.445	31.445	0								0	0	0	0.29356	1	11212	11212		36.447	3.6343	1		+		9617	17585	5869	5898	9778	9778					0.09435217482712233
ENPVVVVVK	9	Unmodified	_ENPVVVVVK_					0	0	0			REV__ENSG00000214753|ENST00000301785|HNRNPUL2	REV__ENSG00000214753|ENST00000301785|HNRNPUL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.8002014160156	2	491.800217	981.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.868	1	30.868	30.368	31.368	0								0	0	0	0.18541	1	11475	11475		53.089	17.937	1		+		9618	17585	5869	5898	9779	9779					0.09435217482712233
ENQLLERR	8	Unmodified	_ENQLLERR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.294189453125	2	529.291079	1056.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.732	1	38.732	38.232	39.232	0								0	0	0	1.7419	1	14724	14724		60.972	4.2509	1				9619	8001	5870	5899	9780	9780					0.04158475560689112
ENQSYAELI	9	Unmodified	_ENQSYAELI_					0	0	0		FOXO4|p.G102E|1|0.43|ENSG00000184481|chrX:71096833-71096833|G/A|missense_variant	FOXO4|p.G102E|1|0.43|ENSG00000184481|chrX:71096833-71096833|G/A|missense_variant	FOXO4|p.G102E|1|0.43|ENSG00000184481|chrX:71096833-71096833|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2573852539062	2	533.756204	1065.49785	-1.3141	-0.0007014	-1.5168	-0.00080958	-2.8308	-0.001511	534.2578329969815	36.141	0.16255	36.141	36.06	36.222	0					7	5	2	0	0	0	0.4966	1	12922	12922		32.812	9.7699	1	82424			9620	11146	5871	5900	9781	9781					-0.03227447898552782
ENQVVVKY	8	Unmodified	_ENQVVVKY_					0	0	0			REV__DEPDC5|p.C416*|1|0.04|ENSG00000100150|chr22:31806152-31806152|T/-|frameshift_variant	REV__DEPDC5|p.C416*|1|0.04|ENSG00000100150|chr22:31806152-31806152|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7660827636719	2	489.766374	977.518196	-0.52621	-0.00025772	1.2399	0.00060724	0.71365	0.00034952	489.7670591350962	25.958	0.50014	25.958	25.718	26.218	0					14	8	2	0	0	0	0.41701	1	9150	9150		68.787	10.976	1	455390	+		9621	12699	5872	5901	9782	9782					0.028537675519032746
ENRVLPMPT	9	Unmodified	_ENRVLPMPT_					0	0	0		ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.778076171875	2	528.778959	1055.54336	-1.1725	-0.00062001	-0.55571	-0.00029385	-1.7282	-0.00091386	528.7784570208815	25.038	0.14178	25.038	24.986	25.128	0					5	3	2	0	0	0	0.48389	1	7912	7912		34.173	0	1	69682			9622	5014	5873	5902	9783	9783					0.017814990828355803
ENSKEADIL	9	Unmodified	_ENSKEADIL_					0	0	0		CPOX|p.E441D|1|0.12|ENSG00000080819|chr3:98580725-98580725|T/G|missense_variant	CPOX|p.E441D|1|0.12|ENSG00000080819|chr3:98580725-98580725|T/G|missense_variant	CPOX|p.E441D|1|0.12|ENSG00000080819|chr3:98580725-98580725|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.262451171875	2	509.756204	1017.49785	1.3543	0.00069035	-2.4108	-0.0012289	-1.0565	-0.00053857	509.7541262115173	38.317	0.52171	38.317	38.072	38.594	0					17	11	2	0	0	0	0.24334	1	15015	15015		56.434	5.2411	1	296970			9623	683	5874	5903	9784	9784					-0.010194478985567912
ENSLDDFED	9	Unmodified	_ENSLDDFED_					0	0	0		ENSG00000119922|ENST00000371826|IFIT2;IFIT2|p.N67Tfs*14|1|0.28|ENSG00000119922|chr10:89306153-89306153|A/-|frameshift_variant;IFIT2|p.K272Rfs*3|2|0.2|ENSG00000119922|chr10:89306767-89306767|A/-|frameshift_variant	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.209228515625	2	542.209283	1082.40401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.113	1	13.113	12.613	13.613	0								0	0	0	0.38404	1	3115	3115		15.642	0.97771	1				9624	3147	5875	5904	9785	9785					-0.13389211791491107
ENSPIGHSVI	10	Unmodified	_ENSPIGHSVI_					0	0	0		nc|ENSG00000156453|Q08174|PCDH1;ENSG00000156453|ENST00000287008|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7716064453125	2	526.772188	1051.52982	0.60276	0.00031752	-0.61345	-0.00032315	-0.010682	-5.627E-06	526.771801392188	29.082	0.12176	29.082	29.038	29.16	0					7	4	2	0	0	0	0.56931	1	9141	9141		37.812	4.9991	1	70021			9625	5171	5876	5905	9786	9786					0.006119645752505676
ENSVLHIEK	9	Unmodified	_ENSVLHIEK_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.8623046875	3	356.860984	1067.56112	3.0702	0.0010956	0.5865	0.0002093	3.6567	0.0013049	356.8611557873515	30.466	2.3462	30.466	30.261	32.607	0					64	47	2	0	0	0	0.3269	1	11267	11267		47.228	9.7195	1	14838000	+		9626	14981	5877	5906	9787	9787					0.030045376093539744
ENSVQDFKI	9	Unmodified	_ENSVQDFKI_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33;USP33|p.I935Lfs*3|1|0.1|ENSG00000077254|chr1:77697343-77697343|T/-|frameshift_variant	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7713012695312	2	540.272021	1078.52949	0.97105	0.00052463	-1.1882	-0.00064193	-0.21711	-0.0001173	540.2717514989536	31.086	0.2196	31.086	30.961	31.181	0					18	8	3	0	0	0	0.1424	1	9949	9949		69.628	4.1622	1	235600			9627	1579	5878	5907	9788	9788					-0.0066345514460408594
ENVIRELK	8	Unmodified	_ENVIRELK_					0	0	0		tr|U7SM17|U7SM17_FUSNUAmidinotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02017PE=4SV=1	tr|U7SM17|U7SM17_FUSNUAmidinotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02017PE=4SV=1	tr|U7SM17|U7SM17_FUSNUAmidinotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02017PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2373046875	2	500.792924	999.571294	0.15248	7.6358E-05	-0.20748	-0.0001039	-0.055003	-2.7545E-05	500.7927153639328	26.918	0.34895	26.918	26.639	26.988	0					11	8	2	0	0	0	0.64746	1	8706	8706		41.427	0.85399	1	36272			9628	22655	5879	5908	9789	9789					0.07149145334551577
ENVKYGIVL	9	Unmodified	_ENVKYGIVL_					0	0	0		ENTPD1|p.R167Kfs*27|1|0.11|ENSG00000138185|chr10:95844558-95844573|GCCAGGATCATTACTG/-|frameshift_variant;ENST00000490659.5_1_10:97583001-97604470:+|nuORF;ENST00000371206.6_1_10:97583001-97605437:+|nuORF;nc|ENSG00000138185|P49961-3|ENTPD1;ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1	ENTPD1|p.R167Kfs*27|1|0.11|ENSG00000138185|chr10:95844558-95844573|GCCAGGATCATTACTG/-|frameshift_variant	ENTPD1|p.R167Kfs*27|1|0.11|ENSG00000138185|chr10:95844558-95844573|GCCAGGATCATTACTG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7974853515625	2	517.797675	1033.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.996	1	43.996	43.496	44.496	0								0	0	0	0.3119	1	17630	17630		25.45	0	1				9629	4238	5880	5909	9790	9790					0.06534913620089355
ENVMRVRGP	9	Unmodified	_ENVMRVRGP_					0	0	0		ENST00000475019.1_1_3:145914331-145918851:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000475019.1_1_3:145914331-145918851:-|nuORF	ENST00000475019.1_1_3:145914331-145918851:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7841796875	2	529.2822	1056.54985	0.07443	3.9394E-05	0.3066	0.00016228	0.38103	0.00020167	529.28224316889	35.52	0.51244	35.52	35.418	35.93	0					85	25	5	0	0	0	0.37197	1	12115	12115		44.117	14.967	1	4963500			9630	2861	5881	5910	9791	9791					0.023834370342228794
ENVPGQSL	8	Unmodified	_ENVPGQSL_					0	0	0		nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000070182|P11277-3|SPTB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2137451171875	2	422.213975	842.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.51	1	27.51	27.01	28.01	0								0	0	0	1.7419	1	9009	9009		45.972	1.5951	1				9631	11437	5882	5911	9792	9792					-0.01411353924663672
ENVQCCII	8	Carbamidomethyl (C)	_ENVQC(Carbamidomethyl (C))CII_	ENVQC(0.5)C(0.5)II		ENVQC(0)C(0)II		0	1	0		HERC5|p.V627I|2|0.25|ENSG00000138646|chr4:88487096-88487096|G/A|missense_variant	HERC5|p.V627I|2|0.25|ENSG00000138646|chr4:88487096-88487096|G/A|missense_variant	HERC5|p.V627I|2|0.25|ENSG00000138646|chr4:88487096-88487096|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7210693359375	2	489.722795	977.431037	0.57399	0.0002811	-3.8217	-0.0018716	-3.2477	-0.0015905	489.72090299074813	32.525	0.19138	32.525	32.458	32.65	0					8	6	2	0	0	0	0.49887	1	11324	11324		60.294	10.269	2	111280			9632	11183	5883	5912	9793	9793	447;448				-0.0585809798566288
ENVVPLASV	9	Unmodified	_ENVVPLASV_					0	0	0			REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3	REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2608642578125	2	464.260925	926.507297	-0.42381	-0.00019676	-0.14561	-6.76E-05	-0.56941	-0.00026436	464.2608824020257	29.579	0.16995	29.579	29.458	29.628	0					8	4	2	0	0	0	0.24334	1	9960	9960		56.434	12.057	1	146070	+		9633	14117	5884	5913	9794	9794					0.04110365177609765
ENYKYSQERSH	11	Unmodified	_ENYKYSQERSH_					0	0	0			REV__ZNF569|p.C244Y|1|0.11|ENSG00000196437|chr19:37413927-37413927|C/T|missense_variant	REV__ZNF569|p.C244Y|1|0.11|ENSG00000196437|chr19:37413927-37413927|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	720.8271484375	2	720.828754	1439.64296	-3.4996	-0.0025226	0.94616	0.00068202	-2.5535	-0.0018406	720.8295144179866	22.069	0.10208	22.069	22.017	22.119	0					4	2	2	0	0	0	0.76918	1	7123	7123		23.523	3.5259	1	312760	+		9634	22328	5885	5914	9795	9795					-0.05928011769515251
ENYPMDSHQ	9	Unmodified	_ENYPMDSHQ_					0	0	0		CLMN|p.D831Y|1|0.24|ENSG00000165959|chr14:95202858-95202858|C/A|missense_variant	CLMN|p.D831Y|1|0.24|ENSG00000165959|chr14:95202858-95202858|C/A|missense_variant	CLMN|p.D831Y|1|0.24|ENSG00000165959|chr14:95202858-95202858|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7215576171875	2	560.721838	1119.42912	3.4691	0.0019452	-3.7111	-0.0020809	-0.24208	-0.00013574	560.7194634438011	13.646	0.15995	13.646	13.589	13.749	0					5	3	2	0	0	0	0.36892	1	3231	3231		44.377	9.2252	1	602680			9635	556	5886	5915	9796	9796					-0.12581435469905955
ENYSTNALI	9	Unmodified	_ENYSTNALI_					0	0	0		nc|ENSG00000164304|Q8TC20-4|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1	nc|ENSG00000164304|Q8TC20-4|CAGE1	nc|ENSG00000164304|Q8TC20-4|CAGE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7484130859375	2	512.750921	1023.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.33	1	35.33	34.83	35.83	0								0	0	0	0.27939	1	13683	13683		39.253	2.0937	1				9636	5678	5887	5916	9797	9797					-0.02351430552982947
EPAADMEVS	9	Unmodified	_EPAADMEVS_					0	0	0			REV__KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant	REV__KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.703125	2	474.702583	947.390612	-0.56894	-0.00027008	3.0853	0.0014646	2.5163	0.0011945	474.7038560133933	28.147	0.14139	28.147	28.063	28.204	0					6	5	2	0	0	0	0.61124	1	9036	9036		17.365	2.7009	1	39739	+		9637	20797	5888	5917	9798	9798					-0.08518741104444416
EPARPDITY	9	Unmodified	_EPARPDITY_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2670288085938	2	531.266739	1060.51892	1.6899	0.00089777	-0.19809	-0.00010524	1.4918	0.00079253	531.2661628248095	31.074	0.65733	31.074	30.913	31.571	0					30	13	3	0	0	0	0.063823	1	11564	11564		90.37	19.074	1	646920			9638	2423	5889	5918	9799	9799					-0.008914377990549838
EPATGRLASI	10	Unmodified	_EPATGRLASI_					0	0	0			REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.7821350097656	2	507.782556	1013.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.209	1	33.209	32.709	33.709	0								0	0	0	0.328	1	10779	10779		46.457	5.0302	1		+		9639	15901	5890	5919	9800	9800					0.04432554954883017
EPAVTEPGLGP	11	Unmodified	_EPAVTEPGLGP_					0	0	0		ENST00000494092.1_1_1:44685134-44686104:+|nuORF;ENSG00000178028|ENST00000372289|DMAP1	ENST00000494092.1_1_1:44685134-44686104:+|nuORF	ENST00000494092.1_1_1:44685134-44686104:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7759399414062	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.892	1	30.892	30.392	31.392	0								0	0	0	0.41918	1	10573	10573		32.812	7.2384	1				9640	6696	5891	5920	9801	9801					0.004094289981594557
EPCGSLSETV	10	Unmodified	_EPCGSLSETV_					0	0	0		nc|ENSG00000188895|Q68DK7-3|MSL1;nc|ENSG00000188895|Q68DK7-2|MSL1;ENSG00000188895|ENST00000398532|MSL1;MSL1|p.F555Sfs*10|1|0.31|ENSG00000188895|chr17:40133637-40133637|T/-|frameshift_variant;MSL1|p.Q528Kfs*43|1|0.03|ENSG00000188895|chr17:40133556-40133557|-/AAAAACAAACCAAACAA|frameshift_variant	nc|ENSG00000188895|Q68DK7-3|MSL1	nc|ENSG00000188895|Q68DK7-3|MSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2269287109375	2	511.228965	1020.44338	-0.37691	-0.00019269	-3.2112	-0.0016417	-3.5882	-0.0018344	511.2270398297631	19.573	0.22746	19.573	19.484	19.711	0					14	7	3	0	0	0	0.61187	1	5325	5325		32.812	3.6629	1	98875			9641	7282	5892	5921	9802	9802					-0.06602783041626026
EPCSPNVRF	9	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))SPNVRF_	EPC(1)SPNVRF		EPC(51)SPNVRF		0	1	0		ENSG00000044524|ENST00000336596|EPHA3;EPHA3|p.M847Wfs*10|4|0.2|ENSG00000044524|chr3:89450213-89450213|C/-|frameshift_variant;nc|ENSG00000044524|P29320-2|EPHA3;EPHA3|p.E647Rfs*9|1|0.35|ENSG00000044524|chr3:89419248-89419248|A/-|frameshift_variant	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2583618164062	2	553.258391	1104.50223	0.036513	2.0201E-05	0.64316	0.00035584	0.67968	0.00037604	553.2587047801951	18.81	0.88199	18.81	18.677	19.559	0					34	18	3	0	0	0	0.2873	1	5814	5814		51.335	15.717	1	2164600			9642	1210	5893	5922	9803	9803	43				-0.04584261956665614
EPDIPGFDK	9	Unmodified	_EPDIPGFDK_					0	0	0			REV__ENST00000587500.5_1_19:10823370-10823943:+|nuORF	REV__ENST00000587500.5_1_19:10823370-10823943:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2470703125	2	509.248015	1016.48148	1.3427	0.00068378	-1.66	-0.00084535	-0.31726	-0.00016156	509.2468396146704	27.9	0.96865	27.9	27.39	28.359	0					52	19	3	0	0	0	0.25716	1	9983	9983		54.776	4.7518	1	1457800	+		9643	17560	5894	5923	9804	9804					-0.0261052906465693
EPDISYRTF	9	Unmodified	_EPDISYRTF_					0	0	0		CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D	CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant	CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.27197265625	2	564.272021	1126.52949	0.38223	0.00021568	-0.96675	-0.00054551	-0.58453	-0.00032983	564.2714240768269	39.878	0.23302	39.878	39.815	40.048	0					14	8	2	0	0	0	0.17854	1	15211	15211		64.207	2.516	1	221670			9644	347	5895	5924	9805	9805					-0.028714551446228143
EPEEAREEI	9	Unmodified	_EPEEAREEI_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2568359375	2	551.256568	1100.49858	1.8168	0.0010015	-0.93582	-0.00051588	0.88102	0.00048567	551.2559888561691	24.569	0.21313	24.569	24.463	24.676	0					13	4	4	0	0	0	0.16806	1	8488	8488		65.465	1.9315	1	796190			9645	2988	5896	5925	9806	9806					-0.04764653249526418
EPEELDMRD	9	Unmodified	_EPEELDMRD_					0	0	0			REV__nc|ENSG00000172819|P13631-4|RARG	REV__nc|ENSG00000172819|P13631-4|RARG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.24365234375	2	567.242603	1132.47065	-1.2253	-0.00069505	3.5399	0.002008	2.3146	0.0013129	567.2449589423875	19.98	0.19071	19.98	19.86	20.051	0					8	4	3	0	0	0	0.61124	1	5555	5555		15.642	0.77694	1	66916	+		9646	21121	5897	5926	9807	9807					-0.09028299501255788
EPEHLLPVA	9	Unmodified	_EPEHLLPVA_					0	0	0		ENST00000439351.5_2_3:186288616-186289895:+|nuORF	ENST00000439351.5_2_3:186288616-186289895:+|nuORF	ENST00000439351.5_2_3:186288616-186289895:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7744445800781	2	502.7742	1003.53385	0.724	0.00036401	-0.024008	-1.207E-05	0.69999	0.00035194	502.77415847362215	34.881	0.39185	34.881	34.772	35.164	0					16	10	2	0	0	0	0.41113	1	13120	13120		33.516	3.0119	1	85916			9647	9560	5898	5927	9808	9808					0.032220540689422705
EPEIIKMQL	9	Unmodified	_EPEIIKMQL_					0	0	0			REV__EIF2AK1|p.Q600P|1|0.34|ENSG00000086232|chr7:6024767-6024767|T/G|missense_variant	REV__EIF2AK1|p.Q600P|1|0.34|ENSG00000086232|chr7:6024767-6024767|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.5379333496094	3	367.538854	1099.59473	0.080223	2.9485E-05	-2.6434	-0.00097156	-2.5632	-0.00094207	367.5377187489963	19.49	0.10003	19.49	19.425	19.525	0					5	3	2	0	0	0	0.55379	1	5046	5046		26.693	5.0072	1	92918	+		9648	12780	5899	5928	9809	9809					0.04891823056891553
EPFPMIEK	8	Unmodified	_EPFPMIEK_					0	0	0			REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant	REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7508544921875	2	495.751879	989.489204	-0.76412	-0.00037881	-1.0272	-0.00050923	-1.7913	-0.00088804	495.7512442924814	17.038	0.21832	17.038	16.879	17.098	0					10	4	3	0	0	0	0.51384	1	4978	4978		58.782	58.782	1	532930	+		9649	12799	5900	5929	9810	9810					-0.005960930687365362
EPFTGSSKILY	11	Unmodified	_EPFTGSSKILY_					0	0	0		CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant;ENSG00000079112|ENST00000027335|CDH17	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	621.32421875	2	621.324254	1240.63395	1.2071	0.00074998	-1.3594	-0.00084464	-0.15234	-9.4651E-05	621.3233232654261	40.534	0.235	40.534	40.441	40.676	0					20	9	3	0	0	0	0.12207	1	15966	15966		85.862	6.4108	1	137090			9650	448	5901	5930	9811	9811					0.023262466120968384
EPFTGSSKILY	11	Unmodified	_EPFTGSSKILY_					0	0	0		CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant;ENSG00000079112|ENST00000027335|CDH17	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	621.32470703125	2	621.324254	1240.63395	0.64853	0.00040294	-0.41295	-0.00025658	0.23558	0.00014637	621.323996676903	40.496	0.32624	40.496	40.392	40.718	0					19	7	4	0	0	0	0.054579	1	16072	16072		96.034	35.915	1	491910			9651	448	5901	5930	9812	9812					0.023262466120968384
EPFTGSSKILY	11	Unmodified	_EPFTGSSKILY_					0	0	0		CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant;ENSG00000079112|ENST00000027335|CDH17	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	621.3241577148438	2	621.324254	1240.63395	3.1135	0.0019345	-2.4611	-0.0015291	0.65248	0.0004054	621.322612550271	40.478	0.24312	40.478	40.376	40.619	0					11	5	3	0	0	0	0.0142	1	16066	16066		129.42	21.334	1	418020			9652	448	5901	5930	9813	9813					0.023262466120968384
EPGAPPPYSAP	11	Unmodified	_EPGAPPPYSAP_					0	0	0		ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7625732421875	2	541.761289	1081.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.734	1	18.734	18.234	19.234	0								0	0	0	0.45144	1	4948	4948		25.574	1.0549	1				9653	3510	5902	5931	9814	9814					-0.02946840173331111
EPGEYVIKR	9	Unmodified	_EPGEYVIKR_					0	0	0			REV__LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	REV__LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7984008789062	2	545.798206	1089.58186	1.9347	0.001056	-1.874	-0.0010229	0.060694	3.3127E-05	545.7979775476024	34.192	0.45286	34.192	34.085	34.538	0					20	9	4	0	0	0	0.0792	1	13092	13092		84.916	35.474	1	606210	+		9654	14360	5903	5932	9815	9815					0.04065127988997119
EPGEYVIKR	9	Unmodified	_EPGEYVIKR_					0	0	0			REV__LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	REV__LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.79931640625	2	545.798206	1089.58186	3.7516	0.0020476	-4.1281	-0.0022531	-0.37646	-0.00020547	545.7969328242614	34.172	0.30794	34.172	34.118	34.426	0					10	6	2	0	0	0	0.21263	1	13109	13109		60.118	16.001	1	514460	+		9655	14360	5903	5932	9816	9816					0.04065127988997119
EPGFNSNN	8	Unmodified	_EPGFNSNN_					0	0	0			REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.6843566894531	2	439.685581	877.35661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.531	1	37.531	37.031	38.031	0								0	0	0	1.7419	1	14687	14687		25.45	8.0852	1		+		9656	12951	5904	5933	9817	9817					-0.08697401481185807
EPGLVPLG	8	Unmodified	_EPGLVPLG_					0	0	0		nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1;nc|ENSG00000177595|Q9HB75-7|PIDD1;ENST00000527357.5_1_11:801679-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-5|PIDD1;nc|ENSG00000177595|Q9HB75-4|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF;ENST00000524486.5_1_11:799309-803120:-|nuORF	nc|ENSG00000177595|Q9HB75-3|PIDD1	nc|ENSG00000177595|Q9HB75-3|PIDD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.2255554199219	2	391.226354	780.438155	-0.78406	-0.00030674	-2.1762	-0.0008514	-2.9603	-0.0011581	391.22557468320116	51.364	0.19775	51.364	51.263	51.46	0					14	12	2	0	0	0	0.78146	1	16695	16695		23.037	0	1	55764			9657	6674	5905	5934	9818	9818					0.039153259487079595
EPGPARDG	8	Unmodified	_EPGPARDG_					0	0	0			REV__ENST00000570932.5_1_17:79094187-79095082:-|nuORF	REV__ENST00000570932.5_1_17:79094187-79095082:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.6914367675781	2	399.690667	797.366781	-0.35247	-0.00014088	2.2076	0.00088236	1.8551	0.00074149	399.69166109646056	41.647	0.2051	41.647	41.595	41.8	0					12	10	2	0	0	0	0.76283	1	15819	15819		25.45	1.2474	1	62388	+		9658	12021	5906	5935	9819	9819					-0.04000793755949417
EPGPPPRVPV	10	Unmodified	_EPGPPPRVPV_					0	0	0			REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant;REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.795166015625	2	522.795466	1043.57638	1.7969	0.00093943	-1.2904	-0.00067461	0.50654	0.00026482	522.7947379581742	40.674	0.24403	40.674	40.565	40.809	0					24	10	3	0	0	0	0.56931	1	16003	16003		37.812	7.3079	1	274700	+		9659	13295;21602	5907	5936	9820	9820					0.056334491971938405
EPGRLARA	8	Unmodified	_EPGRLARA_					0	0	0		ENST00000458270.2_1_8:144718367-144732071:+|nuORF	ENST00000458270.2_1_8:144718367-144732071:+|nuORF	ENST00000458270.2_1_8:144718367-144732071:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2515869140625	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.154	1	45.154	44.654	45.654	0								0	0	0	1.7419	1	18089	18089		26.796	1.3459	1				9660	9709	5908	5937	9821	9821					0.04839453677379879
EPGRLWLSG	9	Unmodified	_EPGRLWLSG_					0	0	0		PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant	PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant	PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7704772949219	2	507.771991	1013.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.099	1	13.099	12.599	13.599	0								0	0	0	0.28996	1	2611	2611		37.159	1.5408	1				9661	11921	5909	5938	9822	9822					0.023205896460581243
EPGWRVGSTE	10	Unmodified	_EPGWRVGSTE_					0	0	0		ENST00000412495.5_1_20:61143906-61144038:-|nuORF	ENST00000412495.5_1_20:61143906-61144038:-|nuORF	ENST00000412495.5_1_20:61143906-61144038:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2695922851562	2	559.26727	1116.51999	3.4696	0.0019405	0.7173	0.00040116	4.1869	0.0023416	559.2679222704983	49.619	0.23596	49.619	49.544	49.78	0					16	11	3	0	0	0	0.55603	1	19619	19619		39.253	1.4413	1	111210			9662	9319	5910	5939	9823	9823					-0.0336122343014722
EPGYKGPHCQ	10	Unmodified	_EPGYKGPHCQ_					0	0	0		MEGF11|p.R343H|1|0.21|ENSG00000157890|chr15:65964992-65964992|C/T|missense_variant	MEGF11|p.R343H|1|0.21|ENSG00000157890|chr15:65964992-65964992|C/T|missense_variant	MEGF11|p.R343H|1|0.21|ENSG00000157890|chr15:65964992-65964992|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.8135375976562	2	558.250566	1114.48658	1.1172	0.00062368	-2.549	-0.001423	-1.4318	-0.0007993	558.2484193047596	34.564	0.39147	34.564	34.411	34.803	0					19	12	3	0	0	0	0.61187	1	12298	12298		32.812	4.9302	1	47931			9663	11357	5911	5940	9824	9824					-0.06608548473695919
EPHAKDQTR	9	Unmodified	_EPHAKDQTR_					0	0	0			REV__TRAF1|p.E75D|1|0.16|ENSG00000056558|chr9:120923708-120923708|C/A|missense_variant	REV__TRAF1|p.E75D|1|0.16|ENSG00000056558|chr9:120923708-120923708|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.274658203125	2	541.272887	1080.53122	1.0461	0.00056624	1.7134	0.0009274	2.7595	0.0014936	541.2737001172619	17.759	0.23588	17.759	17.598	17.834	0					12	5	3	0	0	0	0.48389	1	4479	4479		34.173	0	1	186960	+		9664	22227	5912	5941	9825	9825					-0.005824013360324898
EPHPGPDSL	9	Unmodified	_EPHPGPDSL_					0	0	0			REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.72418212890625	2	474.724707	947.43486	-0.10118	-4.8033E-05	-0.83068	-0.00039435	-0.93187	-0.00044238	474.7243730034431	29.318	0.17313	29.318	29.27	29.443	0					7	4	2	0	0	0	0.25109	1	9855	9855		55.504	55.504	1	122660	+		9665	13420	5913	5942	9826	9826					-0.04095968895956048
EPILEGHLG	9	Unmodified	_EPILEGHLG_					0	0	0		nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y	nc|ENSG00000114374|O00507-2|USP9Y	nc|ENSG00000114374|O00507-2|USP9Y	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2571105957031	2	482.758549	963.502546	-0.27783	-0.00013413	-2.0781	-0.0010032	-2.356	-0.0011374	482.75832666846276	27.867	0.59438	27.867	27.616	28.21	0					19	14	2	0	0	0	0.50461	1	9244	9244		31.955	1.4512	1	210350			9666	2843	5914	5943	9827	9827					0.019334810348595965
EPIVNGHIN	9	Unmodified	_EPIVNGHIN_					0	0	0		nc|ENSG00000121904|Q7Z408|CSMD2;ENSG00000121904|ENST00000373381|CSMD2	nc|ENSG00000121904|Q7Z408|CSMD2	nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2618713378906	2	496.761623	991.508694	0.71589	0.00035563	-1.2053	-0.00059877	-0.48946	-0.00024315	496.76124452472885	32.072	0.49407	32.072	31.899	32.393	0					56	12	7	0	0	0	0.45358	1	11820	11820		37.159	11.709	1	10637000			9667	3241	5915	5944	9828	9828					0.012599992663808735
EPLAGDRPP	9	Unmodified	_EPLAGDRPP_					0	0	0		nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	nc|ENSG00000141837|O00555-6|CACNA1A	nc|ENSG00000141837|O00555-6|CACNA1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.24853515625	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.152	1	30.152	29.652	30.652	0								0	0	0	0.3368	1	9578	9578		27.882	0	1				9668	4472	5916	5945	9829	9829					0.004923103750456903
EPLGKSWAF	9	Unmodified	_EPLGKSWAF_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.770751953125	2	517.768917	1033.52328	0.24077	0.00012466	2.7499	0.0014238	2.9907	0.0015485	517.769853145205	44.291	0.33365	44.291	44.037	44.371	0					25	14	3	0	0	0	0.54267	1	17705	17705		27.882	1.0861	1	52008			9669	7016	5917	5946	9830	9830					0.007860714144953818
EPLHNVQVL	9	Unmodified	_EPLHNVQVL_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7935180664062	2	524.792924	1047.57129	0.11424	5.9954E-05	0.3772	0.00019795	0.49144	0.0002579	524.7931228592132	35.703	0.32999	35.703	35.591	35.921	0					20	9	3	0	0	0	0.18605	1	13828	13828		63.306	8.53	1	715950			9670	330	5918	5947	9831	9831					0.049411453345555856
EPLPQLCHR	9	Unmodified	_EPLPQLCHR_					0	0	0			REV__ENSG00000137218|ENST00000373018|FRS3	REV__ENSG00000137218|ENST00000373018|FRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.782958984375	2	546.784576	1091.5546	1.8608	0.0010174	-3.9978	-0.0021859	-2.1371	-0.0011685	546.7821751671815	12.634	0.1344	12.634	12.548	12.683	0					6	3	2	0	0	0	0.37197	1	2903	2903		44.117	5.3107	1	148620	+		9671	14910	5919	5948	9832	9832					0.012483211769676927
EPLSSETQY	9	Unmodified	_EPLSSETQY_					0	0	0		ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A	ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000143398|Q99755-4|PIP5K1A	ENST00000480546.1_1_10:95718567-95721153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2409057617188	2	527.240386	1052.46622	0.94233	0.00049683	-0.55422	-0.00029221	0.38811	0.00020463	527.2401038594528	32.98	0.66255	32.98	32.802	33.465	0					31	15	3	0	0	0	0.19605	1	12551	12551		62.107	17.991	1	234250			9672	9952;4552	5920	5949	9833	9833					-0.05791440652501478
EPLSSETQY	9	Unmodified	_EPLSSETQY_					0	0	0		ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A	ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000143398|Q99755-4|PIP5K1A	ENST00000480546.1_1_10:95718567-95721153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2413330078125	2	527.240386	1052.46622	0.65257	0.00034406	0.30025	0.0001583	0.95282	0.00050236	527.2403692963695	33.03	0.54469	33.03	32.721	33.266	0					25	11	3	0	0	0	0.12239	1	12451	12451		74.255	8.4519	1	281570			9673	9952;4552	5920	5949	9834	9834					-0.05791440652501478
EPMDIRSAY	9	Unmodified	_EPMDIRSAY_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;KIAA1217|p.N1661Tfs*23|1|0.07|ENSG00000120549|chr10:24544247-24544247|A/-|frameshift_variant	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2527465820312	2	541.252774	1080.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.416	1	34.416	33.916	34.916	0								0	0	0	0.30504	1	12818	12818		34.173	5.023	1				9674	3177	5921	5950	9835	9835					-0.0460308405079104
EPMDIRSAY	9	Unmodified	_EPMDIRSAY_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;KIAA1217|p.N1661Tfs*23|1|0.07|ENSG00000120549|chr10:24544247-24544247|A/-|frameshift_variant	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2533569335938	2	541.252774	1080.491	1.3344	0.00072226	0.12859	6.96E-05	1.463	0.00079186	541.2526237689916	34.46	0.39633	34.46	34.274	34.67	0					20	10	3	0	0	0	0.12239	1	13243	13243		74.255	6.7614	1	172860			9675	3177	5921	5950	9836	9836					-0.0460308405079104
EPNFVAVGLY	10	Unmodified	_EPNFVAVGLY_					0	0	0		WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant	WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7875366210938	2	554.787307	1107.56006	1.4161	0.00078562	0.092768	5.1467E-05	1.5088	0.00083709	554.7873367957105	34.993	0.92246	34.993	34.544	35.467	0					82	42	2	0	0	0	0.58896	1	11321	11321		35.618	0.46626	1	124850			9676	5233	5922	5951	9837	9837					0.010583232404542287
EPNYGAEIRG	10	Unmodified	_EPNYGAEIRG_					0	0	0		ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN	ENSG00000038427|ENST00000265077|VCAN	ENSG00000038427|ENST00000265077|VCAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.267578125	2	553.26727	1104.51999	0.2067	0.00011436	0.61716	0.00034145	0.82385	0.00045581	553.2675451637485	20.343	0.20404	20.343	20.243	20.447	0					11	6	2	0	0	0	0.63224	1	5687	5687		30.318	1.1682	1	102750			9677	1183	5923	5952	9838	9838					-0.028092234301539065
EPPQHLLIV	9	Unmodified	_EPPQHLLIV_					0	0	0			REV__ENST00000550103.2_1_14:90315160-90397958:-|nuORF	REV__ENST00000550103.2_1_14:90315160-90397958:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3065795898438	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.396	1	39.396	38.896	39.896	0								0	0	0	0.32356	1	13244	13244		30.504	0	1		+		9678	20190	5924	5953	9839	9839					0.0762661985700106
EPPRERNLVP	10	Unmodified	_EPPRERNLVP_					0	0	0			REV__ENST00000591574.5_1_17:76698278-76704312:-|nuORF	REV__ENST00000591574.5_1_17:76698278-76704312:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	603.8313598632812	2	603.833111	1205.65167	0.36876	0.00022267	-3.3983	-0.002052	-3.0296	-0.0018293	603.8311083485561	22.685	0.3105	22.685	22.584	22.894	0					11	6	3	0	0	0	0.39647	1	7728	7728		52.937	17.785	1	192710	+		9679	20530	5925	5954	9840	9840					0.057070066575988676
EPQHWPVQY	9	Unmodified	_EPQHWPVQY_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.2815551757812	2	592.28018	1182.54581	3.1772	0.0018818	-2.3027	-0.0013638	0.87449	0.00051794	592.278668108502	37.772	0.43932	37.772	37.535	37.974	0					23	9	3	0	0	0	0.036372	1	14767	14767		102.77	15.019	1	203350			9680	6662	5926	5955	9841	9841					-0.03816329187861811
EPQRALGAP	9	Unmodified	_EPQRALGAP_					0	0	0			REV__nc|ENSG00000132781|Q9UIF7-4|MUTYH	REV__nc|ENSG00000132781|Q9UIF7-4|MUTYH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7564392089844	2	469.756341	937.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.018	1	16.018	15.518	16.518	0								0	0	0	0.14517	1	3707	3707		60.972	2.19	1		+		9681	21021	5927	5956	9842	9842					0.026880166119553905
EPRESDLRKVL	11	Unmodified	_EPRESDLRKVL_					0	0	0			REV__ENST00000409072.3_2_7:38725570-38725973:-|nuORF	REV__ENST00000409072.3_2_7:38725570-38725973:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	671.3773193359375	2	671.377883	1340.74121	0.24379	0.00016367	-0.34043	-0.00022856	-0.096644	-6.4884E-05	671.3776814154287	24.576	0.36843	24.576	24.388	24.757	0					31	10	4	0	0	0	0.77123	1	7216	7216		20.837	3.3691	1	950000	+		9682	18989	5928	5957	9843	9843					0.08447216546323943
EPRQGRVWSQ	10	Unmodified	_EPRQGRVWSQ_					0	0	0			REV__ENSG00000166261|ENST00000530393|ZNF202	REV__ENSG00000166261|ENST00000530393|ZNF202	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	621.8197631835938	2	621.820535	1241.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.89	1	20.89	20.39	21.39	0								0	0	0	0.362	1	5959	5959		36.447	2.3602	1		+		9683	16101	5929	5958	9844	9844					0.015369518550414796
EPSIWTVDD	9	Unmodified	_EPSIWTVDD_					0	0	0		nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2374877929688	2	531.242929	1060.47131	-0.16505	-8.7682E-05	1.1707	0.00062195	1.0057	0.00053426	531.243450470807	29.258	0.59572	29.258	29.058	29.653	0					61	23	4	0	0	0	0.32741	1	9459	9459		47.916	0.25827	1	3068300			9684	6456	5930	5959	9845	9845					-0.056511367899020115
EPSPPALLR	9	Unmodified	_EPSPPALLR_					0	0	0		ENST00000253237.9_1_19:48957556-48957973:+|nuORF	ENST00000253237.9_1_19:48957556-48957973:+|nuORF	ENST00000253237.9_1_19:48957556-48957973:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2818298339844	2	490.282192	978.549831	-0.47467	-0.00023272	-0.10934	-5.3606E-05	-0.58401	-0.00028633	490.28197968440173	38.413	0.18833	38.413	38.305	38.493	0					9	6	2	0	0	0	0.2873	1	14590	14590		51.335	5.3835	1	75283			9685	8249	5931	5960	9846	9846					0.05969760305845284
EPSPPALLR	9	Unmodified	_EPSPPALLR_					0	0	0		ENST00000253237.9_1_19:48957556-48957973:+|nuORF	ENST00000253237.9_1_19:48957556-48957973:+|nuORF	ENST00000253237.9_1_19:48957556-48957973:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.28271484375	2	490.282192	978.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.144	1	38.144	37.644	38.644	0								0	0	0	0.27025	1	13646	13646		40.778	7.9657	1				9686	8249	5931	5960	9847	9847					0.05969760305845284
EPSSQIFK	8	Unmodified	_EPSSQIFK_					0	0	0		nc|ENSG00000185917|Q9NVD3-2|SETD4;ENST00000481477.5_1_21:37418129-37431186:-|nuORF	nc|ENSG00000185917|Q9NVD3-2|SETD4	nc|ENSG00000185917|Q9NVD3-2|SETD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2435302734375	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.737	1	13.737	13.237	14.237	0								0	0	0	1.7419	1	3260	3260		47.657	10.498	1				9687	9960	5932	5961	9848	9848					0.006137921435311
EPSSVKMRGT	10	Unmodified	_EPSSVKMRGT_					0	0	0			REV__ENST00000607092.1_1_7:101459320-101559506:+|nuORF	REV__ENST00000607092.1_1_7:101459320-101559506:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.281494140625	2	546.279323	1090.54409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.812	1	39.812	39.312	40.312	0								0	0	0	0.4201	1	14178	14178		19.104	0	1		+		9688	19216	5933	5962	9849	9849					0.00244293731907419
EPTITAVSR	9	Unmodified	_EPTITAVSR_					0	0	0			REV__PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	REV__PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2689514160156	2	487.269281	972.52401	-1.244	-0.00060618	0.023959	1.1674E-05	-1.2201	-0.0005945	487.2689329158532	30.745	0.092497	30.745	30.69	30.782	0					6	3	2	0	0	0	0.40353	1	10134	10134		41.427	2.1738	1	54860	+		9689	14581	5934	5963	9850	9850					0.03664866063570571
EPTMKVWGK	9	Unmodified	_EPTMKVWGK_					0	0	0			REV__nc|ENSG00000111801|O00478-2|BTN3A3	REV__nc|ENSG00000111801|O00478-2|BTN3A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2833862304688	2	538.283877	1074.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.737	1	13.737	13.237	14.237	0								0	0	0	0.37496	1	3411	3411		18.324	0.95945	1		+		9690	13981	5935	5964	9851	9851					0.01890687088211962
EPTRSAQPV	9	Unmodified	_EPTRSAQPV_					0	0	0		ENST00000565830.5_1_16:29841852-29843003:+|nuORF	ENST00000565830.5_1_16:29841852-29843003:+|nuORF	ENST00000565830.5_1_16:29841852-29843003:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.75897216796875	2	492.759081	983.503609	0.7861	0.00038736	-1.1968	-0.00058972	-0.41066	-0.00020236	492.7585198462616	14.781	0.18122	14.781	14.693	14.875	0					7	4	2	0	0	0	0.22377	1	3687	3687		58.782	0.97068	1	562630			9691	10755	5936	5965	9852	9852					0.01119695403770038
EPVGGGAPPSF	11	Unmodified	_EPVGGGAPPSF_					0	0	0			REV__nc|ENSG00000166886|Q15742-2|NAB2	REV__nc|ENSG00000166886|Q15742-2|NAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7496643066406	2	507.748182	1013.48181	-0.61609	-0.00031282	1.3415	0.00068112	0.72536	0.0003683	507.74889441585805	39.782	0.34426	39.782	39.543	39.887	0					27	19	2	0	0	0	0.69004	1	13309	13309		25.574	0	1	80659	+		9692	16147	5937	5966	9853	9853					-0.024391093448116408
EPVKSISSM	9	Unmodified	_EPVKSISSM_					0	0	0		nc|ENSG00000170345|P01100-2|FOS;nc|ENSG00000170345|P01100-3|FOS;ENSG00000170345|ENST00000303562|FOS	nc|ENSG00000170345|P01100-2|FOS	nc|ENSG00000170345|P01100-2|FOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.251953125	2	489.252243	976.489932	-0.51612	-0.00025251	-0.16613	-8.1282E-05	-0.68225	-0.00033379	489.2522795010909	27.583	0.27052	27.583	27.459	27.729	0					10	5	3	0	0	0	0.14603	1	9892	9892		68.787	15.435	1	280320			9693	6228	5938	5967	9854	9854					0.0007470158031992469
EPVSELAPE	9	Unmodified	_EPVSELAPE_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.73809814453125	2	485.740022	969.465492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.504	1	31.504	31.004	32.004	0								0	0	0	0.3304	1	10855	10855		29.15	0.89528	1		+		9694	17824	5939	5968	9855	9855					-0.020462353015659573
EPWLNCDPN	9	Unmodified	_EPWLNCDPN_					0	0	0		nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.228759765625	2	544.229299	1086.44404	0.36229	0.00019717	-0.60752	-0.00033063	-0.24523	-0.00013346	544.2291205186748	12.657	0.090922	12.657	12.595	12.686	0					8	3	3	0	0	0	0.61124	1	2706	2706		16.473	16.473	1	429000			9695	3250	5940	5969	9856	9856					-0.09571943601918065
EPWVREPR	8	Unmodified	_EPWVREPR_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7825927734375	2	534.78289	1067.55123	-1.3424	-0.00071791	0.80484	0.00043041	-0.5376	-0.0002875	534.7832769877353	22.18	0.1916	22.18	22.099	22.29	0					7	4	2	0	0	0	0.43813	1	6555	6555		65.803	10.299	1	527340	+		9696	13831	5941	5970	9857	9857					0.020153943946070285
EPYAGYDRH	9	Unmodified	_EPYAGYDRH_					0	0	0		ENSG00000116199|ENST00000263733|FAM20B	ENSG00000116199|ENST00000263733|FAM20B	ENSG00000116199|ENST00000263733|FAM20B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2482299804688	2	554.246338	1106.47812	3.6044	0.0019977	-0.014336	-7.9459E-06	3.5901	0.0019898	554.2461383667832	14.534	0.37088	14.534	14.423	14.794	0					14	7	3	0	0	0	0.55379	1	3646	3646		26.693	3.1702	1	3685500			9697	2969	5942	5971	9858	9858					-0.07085779118665414
EQARLLAL	8	Unmodified	_EQARLLAL_					0	0	0		ENST00000532857.1_1_18:74155078-74202646:-|nuORF	ENST00000532857.1_1_18:74155078-74202646:-|nuORF	ENST00000532857.1_1_18:74155078-74202646:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.27630615234375	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.44	1	28.44	27.94	28.94	0								0	0	0	1.7419	1	10050	10050		47.916	7.1374	1				9698	10455	5943	5972	9859	9859					0.07949777651424483
EQAVSPIIQ	9	Unmodified	_EQAVSPIIQ_					0	0	0			REV__ENST00000494484.1_1_7:44841030-44841111:+|nuORF	REV__ENST00000494484.1_1_7:44841030-44841111:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7687072753906	2	492.771657	983.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.601	1	41.601	41.101	42.101	0								0	0	0	0.30504	1	16357	16357		34.173	2.2177	1		+		9699	19752	5944	5973	9860	9860					0.03633750206347486
EQDNDFLIY	9	Unmodified	_EQDNDFLIY_					0	0	0		nc|ENSG00000185518|Q7L1I2-2|SV2B;SV2B|p.G586Wfs*4|2|0.27|ENSG00000185518|chr15:91289561-91289562|-/T|frameshift_variant;ENSG00000185518|ENST00000394232|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.7636108398438	2	578.761486	1155.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.605	1	13.605	13.105	14.105	0								0	0	0	0.32356	1	3349	3349		30.504	7.4612	1				9700	7085	5945	5974	9861	9861					-0.06311465244129977
EQEDRESL	8	Unmodified	_EQEDRESL_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-3|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.22918701171875	2	503.22781	1004.44107	2.9287	0.0014738	-0.1645	-8.278E-05	2.7642	0.001391	503.22771731814066	19.816	0.86924	19.816	19.508	20.377	0					48	17	6	0	0	0	0.63077	1	6154	6154		44.117	0	1	10290000	+		9701	12746	5946	5975	9862	9862					-0.06097495455094304
EQEQMFNDPVT	11	Unmodified	_EQEQMFNDPVT_					0	0	0			REV__tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1	REV__tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	669.2880249023438	2	669.287542	1336.56053	0.2438	0.00016317	0.68792	0.00046042	0.93173	0.00062359	669.2882480265718	34.688	0.21307	34.688	34.603	34.816	0					21	9	3	0	0	0	0.7887	1	11346	11346		17.468	0	1	139660	+		9702	21828	5947	5976	9863	9863					-0.09428669892690777
EQEQQQQQL	9	Unmodified	_EQEQQQQQL_					0	0	0			REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7752075195312	2	579.772916	1157.53128	3.2512	0.0018849	0.58173	0.00033727	3.8329	0.0022222	579.7732240003699	26.426	0.71741	26.426	26.218	26.936	0					40	14	4	0	0	0	0.24095	1	9301	9301		56.721	0.28726	1	1618000	+		9703	13148	5948	5977	9864	9864					-0.041184461266539074
EQERAVLQK	9	Unmodified	_EQERAVLQK_					0	0	0			REV__ENSG00000125844|ENST00000377813|RRBP1	REV__ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.80712890625	2	550.806562	1099.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.078	1	15.078	14.578	15.578	0								0	0	0	0.29356	1	4050	4050		36.447	0.82846	1		+		9704	14443	5949	5978	9865	9865					0.052756288749378655
EQESARQLQL	10	Unmodified	_EQESARQLQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	601.3114013671875	2	601.312209	1200.60986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.522	1	28.522	28.022	29.022	0								0	0	0	0.011307	1	8918	8918		101.25	28.373	1				9705	6707	5950	5979	9866	9866					0.017584061784191363
EQETEQRLQ	9	Unmodified	_EQETEQRLQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.7809448242188	2	580.780741	1159.54693	1.5206	0.00088315	-1.1445	-0.00066471	0.37613	0.00021845	580.7800539804977	19.421	0.16565	19.421	19.313	19.479	0					6	3	2	0	0	0	0.35021	1	6151	6151		45.972	0	1	738010	+		9706	15717	5951	5980	9867	9867					-0.02646159609616916
EQETSVRKR	9	Unmodified	_EQETSVRKR_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;nc|ENSG00000151914|Q03001-11|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.807373046875	2	566.807094	1131.59963	1.9294	0.0010936	-1.2483	-0.00070754	0.68108	0.00038604	566.8062734625937	14.544	0.14587	14.544	14.45	14.596	0					6	3	2	0	0	0	0.38666	1	3811	3811		42.864	5.0528	1	940830			9707	854	5952	5981	9868	9868					0.03909843243832256
EQEVVADETP	10	Unmodified	_EQEVVADETP_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1;ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7587280273438	2	558.756401	1115.49825	3.4689	0.0019383	0.96826	0.00054102	4.4372	0.0024793	558.7568592256563	12.721	0.19353	12.721	12.676	12.87	0					8	4	3	0	0	0	0.64162	1	2785	2785		29.17	3.7199	1	1002300			9708	7709	5953	5982	9869	9869					-0.05488072969365021
EQGPLTLQTL	10	Unmodified	_EQGPLTLQTL_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3037719726562	2	550.303321	1098.59209	0.54894	0.00030209	0.25632	0.00014105	0.80526	0.00044314	550.3033760065317	27.788	0.2732	27.788	27.692	27.965	0					18	6	4	0	0	0	0.056886	1	9736	9736		107.01	5.4068	1	2718200			9709	7181	5954	5983	9870	9870					0.04673690923573304
EQGRLLRR	8	Unmodified	_EQGRLLRR_					0	0	0		nc|ENSG00000167995|O76090-3|BEST1;nc|ENSG00000167995|O76090-4|BEST1;ENSG00000167995|ENST00000378043|BEST1;ENST00000529265.5_1_11:61717864-61725974:+|nuORF;ENST00000524877.5_1_11:61722897-61725974:+|nuORF	nc|ENSG00000167995|O76090-3|BEST1;ENST00000529265.5_1_11:61717864-61725974:+|nuORF	nc|ENSG00000167995|O76090-3|BEST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.310791015625	2	514.309606	1026.60466	3.2051	0.0016484	-0.81467	-0.00041899	2.3904	0.0012294	514.3092348474174	35.56	0.46943	35.56	35.347	35.817	0					20	9	3	0	0	0	0.43813	1	13726	13726		76.847	15.875	1	906180			9710	11635;10352	5955	5984	9871	9871					0.0924219189712403
EQGRVRGR	8	Unmodified	_EQGRVRGR_					0	0	0			REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF;REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2713623046875	2	479.270481	956.52641	0.024486	1.1735E-05	1.9805	0.00094921	2.005	0.00096095	479.27182376451236	23.657	0.13436	23.657	23.595	23.729	0					7	4	2	0	0	0	0.67394	1	6887	6887		37.159	1.9584	1	55306	+		9711	12765;21050	5956	5985	9872	9872					0.046407593118942714
EQHFPEVML	9	Unmodified	_EQHFPEVML_					0	0	0		ENST00000510529.1_1_5:137013137-137034053:-|nuORF;ENST00000504496.5_1_5:136997591-137028142:-|nuORF;ENST00000515334.5_1_5:137008460-137041741:-|nuORF;nc|ENSG00000146021|Q9UH77-3|KLHL3;nc|ENSG00000146021|Q9UH77-2|KLHL3;ENSG00000146021|ENST00000309755|KLHL3	ENST00000510529.1_1_5:137013137-137034053:-|nuORF	ENST00000510529.1_1_5:137013137-137034053:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.2696533203125	2	565.270967	1128.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.577	1	33.577	33.077	34.077	0								0	0	0	0.30504	1	12862	12862		34.173	7.4796	1				9712	4707	5957	5986	9873	9873					-0.03174207154074793
EQHKRIHT	8	Unmodified	_EQHKRIHT_					0	0	0		ENSG00000196670|ENST00000502412|ZFP62;nc|ENSG00000278970|Q8NB50-3|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7857666015625	2	524.785964	1047.55738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.089	1	13.089	12.589	13.589	0								0	0	0	1.7419	1	3105	3105		37.159	2.9866	1				9713	7392	5958	5987	9874	9874					0.03549912626135665
EQHKVLAAL	9	Unmodified	_EQHKVLAAL_					0	0	0		nc|ENSG00000158163|Q8IYY4-2|DZIP1L;DZIP1L|p.R643Gfs*40|2|0.24|ENSG00000158163|chr3:138067606-138067606|G/-|frameshift_variant;ENSG00000158163|ENST00000327532|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7960510253906	2	504.795466	1007.57638	-0.06678	-3.371E-05	-2.3308	-0.0011766	-2.3976	-0.0012103	504.7943460838352	27.923	0.3445	27.923	27.774	28.119	0					25	12	3	0	0	0	0.61124	1	8716	8716		19.36	1.995	1	251930			9714	865	5959	5988	9875	9875					0.0728944919718515
EQIARQQQQLL	11	Unmodified	_EQIARQQQQLL_					0	0	0		nc|ENSG00000134532|P35711-4|SOX5;SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;SOX6|p.P293Lfs*3|1|0.36|ENSG00000110693|chr11:16111823-16111823|G/-|frameshift_variant;SOX6|p.G294Wfs*8|1|0.36|ENSG00000110693|chr11:16111822-16111823|-/G|frameshift_variant;SOX6|p.F490Lfs*7|1|0.35|ENSG00000110693|chr11:16046667-16046667|A/-|frameshift_variant;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-4|SOX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.25146484375	3	452.252764	1353.73646	-0.11508	-5.2044E-05	-3.6878	-0.0016678	-3.8029	-0.0017198	452.2513673988799	21.07	0.16416	21.07	20.98	21.144	0					9	3	4	0	0	0	0.52595	1	6926	6926		42.338	0.91146	1	158050			9715	3925	5960	5989	9876	9876					0.07374332403583139
EQIEAQQQK	9	Unmodified	_EQIEAQQQK_					0	0	0			REV__ENST00000529615.1_1_11:27359677-27371953:-|nuORF	REV__ENST00000529615.1_1_11:27359677-27371953:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.280029296875	2	551.280377	1100.5462	0.6848	0.00037752	-3.9786	-0.0021933	-3.2938	-0.0018158	551.2777385390518	28.767	0.16852	28.767	28.658	28.826	0					6	3	2	0	0	0	0.28897	1	10474	10474		51.193	3.2332	1	134400	+		9716	13917	5961	5990	9877	9877					-4.9542586793904775E-05
EQIEQEPFN	9	Unmodified	_EQIEQEPFN_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2576904296875	2	567.259111	1132.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.817	1	15.817	15.317	16.317	0								0	0	0	0.27025	1	4253	4253		40.778	5.1599	1		+		9717	14382	5962	5991	9878	9878					-0.05728349386890841
EQIIKGSKDV	10	Unmodified	_EQIIKGSKDV_					0	0	0		CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN	CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant	CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8162231445312	2	558.816596	1115.61864	1.8253	0.00102	-1.75	-0.0009779	0.075344	4.2103E-05	558.8154716945265	21.134	0.21253	21.134	21.025	21.238	0					8	4	2	0	0	0	0.09653	1	6842	6842		96.034	0.21844	1	1412000			9718	575	5963	5992	9879	9879					0.06545379814906482
EQKAPATEAG	10	Unmodified	_EQKAPATEAG_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.248046875	2	501.248546	1000.48254	-0.96766	-0.00048504	0.91381	0.00045804	-0.053852	-2.6993E-05	501.24905814281345	15.153	0.11061	15.153	15.097	15.208	0					11	5	3	0	0	0	0.22691	1	3413	3413		76.17	4.2922	1	212030		+	9719	619	5964	5993	9880	9880					-0.0176831469575518
EQKDKKRK	8	Unmodified	_EQKDKKRK_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.8805847167969	3	353.88049	1058.61964	1.4343	0.00050759	-1.3675	-0.00048394	0.066829	2.365E-05	353.88003865574876	16.039	0.32038	16.039	15.93	16.251	0					13	6	3	0	0	0	0.63077	1	4371	4371		64.207	5.4253	1	963540	+		9720	13219	5965	5994	9881	9881					0.09267638974461079
EQKGILAGIV	10	Unmodified	_EQKGILAGIV_					0	0	0			REV__ENST00000465027.1_1_7:99686972-99687407:+|nuORF;REV__ENSG00000168090|ENST00000303904|COPS6	REV__ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.8112182617188	2	514.310949	1026.60735	-1.6109	-0.00082852	1.9545	0.0010052	0.34356	0.0001767	514.312236999465	31.151	0.14	31.151	31.059	31.199	0					6	4	2	0	0	0	0.62235	1	10691	10691		31.53	4.8369	1	93977	+		9721	19408;16241	5966	5995	9882	9882					0.09510602511409161
EQKKESQF	8	Unmodified	_EQKKESQF_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2590942382812	2	512.258914	1022.50327	0.052051	2.6664E-05	0.68075	0.00034872	0.7328	0.00037539	512.2591468547018	27.093	0.11795	27.093	27.002	27.12	0					4	2	2	0	0	0	0.59773	1	9656	9656		49.442	3.4693	1	135010	+		9722	14503	5967	5996	9883	9883					-0.0070772431608929764
EQKKRNDL	8	Unmodified	_EQKKRNDL_					0	0	0		IL7|p.L150R|1|0.17|ENSG00000104432|chr8:78733798-78733798|A/C|missense_variant	IL7|p.L150R|1|0.17|ENSG00000104432|chr8:78733798-78733798|A/C|missense_variant	IL7|p.L150R|1|0.17|ENSG00000104432|chr8:78733798-78733798|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2822875976562	2	515.78563	1029.55671	1.5148	0.00078131	1.0931	0.00056379	2.6079	0.0013451	515.7858773011161	16.944	0.31334	16.944	16.828	17.141	0					16	6	3	0	0	0	0.42778	1	4828	4828		66.429	0	1	569300			9723	11222	5968	5997	9884	9884					0.04311073186431713
EQLAQAALVSS	11	Unmodified	_EQLAQAALVSS_					0	0	0			REV__tr|U7SWT6|U7SWT6_FUSNUOrotatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrEPE=3SV=1	REV__tr|U7SWT6|U7SWT6_FUSNUOrotatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrEPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7994995117188	2	558.798403	1115.58225	1.428	0.00079796	-0.36578	-0.0002044	1.0622	0.00059356	558.798256042984	26.594	0.103	26.594	26.531	26.634	0					5	3	2	0	0	0	0.32407	1	8112	8112		59.931	6.8418	1	44353	+		9724	22009	5969	5998	9885	9885					0.029085029181715072
EQLEILGTQ	9	Unmodified	_EQLEILGTQ_					0	0	0			REV__ENST00000521266.1_1_5:158588592-158600998:-|nuORF	REV__ENST00000521266.1_1_5:158588592-158600998:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7767333984375	2	515.774396	1029.53424	1.4344	0.00073981	-0.48618	-0.00025076	0.94818	0.00048905	515.7742351603623	15.54	0.65255	15.54	15.227	15.88	0					24	13	3	0	0	0	0.19952	1	4348	4348		61.691	8.3398	1	1070700	+		9725	19955	5970	5999	9886	9886					0.020654289981621332
EQLENTPSR	9	Unmodified	_EQLENTPSR_					0	0	0		nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2;ENST00000464932.1_1_2:135676424-135677557:+|nuORF;ENST00000475094.1_1_2:135676424-135700249:+|nuORF	nc|ENSG00000082258|O60583-2|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2653198242188	2	537.264727	1072.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.982	1	18.982	18.482	19.482	0								0	0	0	0.28666	1	5647	5647		37.812	0	1				9726	1673	5971	6000	9887	9887					-0.018455272927667465
EQLHTKDK	8	Unmodified	_EQLHTKDK_					0	0	0			REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.76812744140625	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.04	1	31.04	30.54	31.54	0								0	0	0	1.7419	1	9944	9944		29.17	5.6474	1		+		9727	12421	5972	6001	9888	9888					0.020399819208023473
EQLHTSIGSDI	11	Unmodified	_EQLHTSIGSDI_					0	0	0			REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.2989501953125	2	600.298767	1198.58298	-0.15678	-9.4118E-05	1.1187	0.00067157	0.96195	0.00057745	600.2994918996767	29.42	0.46148	29.42	29.273	29.734	0					26	11	4	0	0	0	0.68382	1	10488	10488		29.17	0.020503	1	388560	+		9728	13048	5973	6002	9889	9889					-0.008367024327299077
EQLLEREK	8	Unmodified	_EQLLEREK_					0	0	0			REV__ENST00000542165.1_1_11:94704505-94704637:-|nuORF	REV__ENST00000542165.1_1_11:94704505-94704637:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.787841796875	2	522.787838	1043.56112	1.5263	0.00079794	-0.60048	-0.00031392	0.92583	0.00048401	522.7877715440817	30.916	0.12125	30.916	30.852	30.973	0					8	5	2	0	0	0	0.62915	1	9895	9895		44.377	1.5129	1	55944	+		9729	20143	5974	6003	9890	9890					0.04108537609317864
EQLLLVPG	8	Unmodified	_EQLLLVPG_					0	0	0			REV__ENST00000443185.6_1_18:74154456-74154642:-|nuORF	REV__ENST00000443185.6_1_18:74154456-74154642:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7591247558594	2	434.760561	867.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.687	1	48.687	48.187	49.187	0								0	0	0	1.7419	1	14780	14780		9.4706	0.64823	1		+		9730	19262	5975	6004	9891	9891					0.06751570528570028
EQLLQNLLK	9	Unmodified	_EQLLQNLLK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.830322265625	2	549.829506	1097.64446	0.22234	0.00012225	0.72222	0.0003971	0.94456	0.00051935	549.8299548041166	37.411	0.11424	37.411	37.376	37.49	0					5	3	2	0	0	0	0.42902	1	14640	14640		39.253	2.0937	1	59479			9731	5668	5976	6005	9892	9892					0.0995427405719056
EQLMHIYSQ	9	Unmodified	_EQLMHIYSQ_					0	0	0		ENSG00000144369|ENST00000304698|FAM171B	ENSG00000144369|ENST00000304698|FAM171B	ENSG00000144369|ENST00000304698|FAM171B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.7749633789062	2	574.773874	1147.53319	3.3312	0.0019147	-0.50916	-0.00029265	2.822	0.001622	574.7738428376792	44.458	0.18815	44.458	44.371	44.559	0					19	7	3	0	0	0	0.50858	1	17792	17792		31.53	2.3803	1	190220			9732	4611	5977	6006	9893	9893					-0.03467108642416861
EQLRRLLVA	9	Unmodified	_EQLRRLLVA_					0	0	0			REV__ENST00000340291.6_1_9:35812160-35812229:-|nuORF	REV__ENST00000340291.6_1_9:35812160-35812229:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.228759765625	3	366.564502	1096.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.985	1	27.985	27.485	28.485	0								0	0	0	0.35377	1	9228	9228		24.519	4.4887	1		+		9733	18444	5978	6007	9894	9894					0.1272080238820763
EQLSKNEL	8	Unmodified	_EQLSKNEL_					0	0	0			REV__nc|ENSG00000132780|P49321-4|NASP	REV__nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.75323486328125	2	480.753464	959.492375	-0.15855	-7.6226E-05	0.25985	0.00012492	0.10129	4.8697E-05	480.7533421189859	22.557	0.26347	22.557	22.463	22.726	0					15	6	4	0	0	0	0.25987	1	7352	7352		95.815	5.2143	1	716310	+		9734	14676	5979	6008	9895	9895					0.011008733096218748
EQLSLEIAK	9	Unmodified	_EQLSLEIAK_					0	0	0			REV__nc|ENSG00000115145|O75886-2|STAM2	REV__nc|ENSG00000115145|O75886-2|STAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7923583984375	2	515.792589	1029.57063	-0.088142	-4.5463E-05	-0.1508	-7.778E-05	-0.23894	-0.00012324	515.7923099888619	18.766	0.095095	18.766	18.707	18.802	0					5	3	2	0	0	0	0.1424	1	4968	4968		69.628	0	1	66144	+		9735	14099	5980	6009	9896	9896					0.05702305894828896
EQLTKSVL	8	Unmodified	_EQLTKSVL_					0	0	0		ENST00000217426.6_1_20:32868554-32868599:-|nuORF	ENST00000217426.6_1_20:32868554-32868599:-|nuORF	ENST00000217426.6_1_20:32868554-32868599:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2681884765625	2	459.26875	916.522947	0.72224	0.0003317	-1.7013	-0.00078135	-0.97905	-0.00044965	459.2678296918619	33.567	0.39407	33.567	33.296	33.69	0					14	9	3	0	0	0	0.30066	1	12872	12872		82.75	9.8712	1	344150			9736	8167	5981	6010	9897	9897					0.06134651694674176
EQLTPTVPSP	10	Unmodified	_EQLTPTVPSP_					0	0	0			REV__MUC16|p.S6238P|1|0.34|ENSG00000181143|chr19:8958058-8958058|A/G|missense_variant	REV__MUC16|p.S6238P|1|0.34|ENSG00000181143|chr19:8958058-8958058|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7861328125	2	534.782222	1067.54989	-0.58485	-0.00031277	1.3749	0.00073529	0.79009	0.00042253	534.7829108955212	18.656	0.15154	18.656	18.588	18.739	0					15	5	4	0	0	0	0.6796	1	4923	4923		24.519	8.8774	1	456970	+		9737	20901	5982	6011	9898	9898					0.018817155151737097
EQMCQIQEQTW	11	Unmodified	_EQMCQIQEQTW_					0	0	0			REV__nc|ENSG00000084070|Q8WU79-2|SMAP2	REV__nc|ENSG00000084070|Q8WU79-2|SMAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2021179199219	3	475.204205	1422.59079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.617	1	14.617	14.117	15.117	0								0	0	0	0.45674	1	3129	3129		21.78	9.5737	1		+		9738	13342	5983	6012	9899	9899					-0.10360634499147636
EQMLQQALQ	9	Unmodified	_EQMLQQALQ_					0	0	0		ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant;ENSG00000206559|ENST00000383768|ZCWPW2	ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant	ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.773193359375	2	544.773874	1087.53319	-1.4958	-0.00081486	-0.65202	-0.0003552	-2.1478	-0.0011701	544.7735558149246	20.424	0.48388	20.424	20.296	20.78	0					24	11	4	0	0	0	0.15558	1	5713	5713		60.118	0	1	1852800			9739	7770	5984	6013	9900	9900					-0.007071086424275563
EQNIAAFLK	9	Unmodified	_EQNIAAFLK_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant;DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.G2194Efs*14|1|0.34|ENSG00000158486|chr16:20997303-20997303|C/-|frameshift_variant;DNAH3|p.I2375Sfs*8|1|0.13|ENSG00000158486|chr16:20985619-20985619|T/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-2|DNAH3;DNAH3|p.N572T|1|0.22|ENSG00000158486|chr16:21117302-21117302|T/G|missense_variant	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.19390869140625	3	345.194075	1032.5604	0.19628	6.7755E-05	-0.6086	-0.00021009	-0.41232	-0.00014233	345.19392369763943	21.613	0.20545	21.613	21.477	21.683	0					10	7	2	0	0	0	0.53083	1	5951	5951		22.58	0	1	220300			9740	5265	5985	6014	9901	9901					0.04541742960282136
EQNRISLIQ	9	Unmodified	_EQNRISLIQ_					0	0	0		CPD|p.R783I|1|0.32|ENSG00000108582|chr17:30442425-30442425|G/T|missense_variant	CPD|p.R783I|1|0.32|ENSG00000108582|chr17:30442425-30442425|G/T|missense_variant	CPD|p.R783I|1|0.32|ENSG00000108582|chr17:30442425-30442425|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.808837890625	2	550.806562	1099.59857	3.7259	0.0020522	0.95138	0.00052403	4.6773	0.0025763	550.806982430915	38.669	0.50583	38.669	38.51	39.015	0					26	10	4	0	0	0	0.11898	1	15208	15208		75.043	7.5496	1	1838900			9741	680	5986	6015	9902	9902					0.05275628874960603
EQPETYYKW	9	Unmodified	_EQPETYYKW_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.7860717773438	2	622.285128	1242.5557	1.231	0.00076602	-1.3272	-0.00082587	-0.096177	-5.985E-05	622.2842872646514	38.43	0.29469	38.43	38.333	38.628	0					17	10	2	0	0	0	0.35021	1	15068	15068		45.972	17.891	1	65044			9742	5738	5987	6016	9903	9903					-0.05587185973149644
EQPFLSVFK	9	Unmodified	_EQPFLSVFK_					0	0	0		PLEKHN1|p.P235Rfs*25|1|0.16|ENSG00000187583|chr1:970971-970971|G/-|frameshift_variant;nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1	PLEKHN1|p.P235Rfs*25|1|0.16|ENSG00000187583|chr1:970971-970971|G/-|frameshift_variant	PLEKHN1|p.P235Rfs*25|1|0.16|ENSG00000187583|chr1:970971-970971|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.80029296875	2	547.797675	1093.5808	1.8772	0.0010283	0.49728	0.00027241	2.3744	0.0013007	547.7980197257291	43.595	0.64191	43.595	43.443	44.085	0					69	21	6	0	0	0	0.46194	1	17569	17569		36.447	5.9431	1	20957000			9743	7204	5988	6017	9904	9904					0.03774913620077314
EQPFLSVFK	9	Unmodified	_EQPFLSVFK_					0	0	0		PLEKHN1|p.P235Rfs*25|1|0.16|ENSG00000187583|chr1:970971-970971|G/-|frameshift_variant;nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1	PLEKHN1|p.P235Rfs*25|1|0.16|ENSG00000187583|chr1:970971-970971|G/-|frameshift_variant	PLEKHN1|p.P235Rfs*25|1|0.16|ENSG00000187583|chr1:970971-970971|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7996215820312	2	547.797675	1093.5808	3.8328	0.0020996	-0.83516	-0.0004575	2.9976	0.0016421	547.7973210808213	43.588	0.56911	43.588	43.463	44.032	0					53	18	5	0	0	0	0.22837	1	17562	17562		58.23	13.853	1	13163000			9744	7204	5988	6017	9905	9905					0.03774913620077314
EQPLHELLK	9	Unmodified	_EQPLHELLK_					0	0	0			REV__ENST00000471992.1_1_17:27185141-27187568:+|nuORF	REV__ENST00000471992.1_1_17:27185141-27187568:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8203125	2	553.813856	1105.61316	0.6109	0.00033833	0.63624	0.00035236	1.2471	0.00069069	553.8137105057405	32.807	0.42871	32.807	32.656	33.084	0					32	11	4	0	0	0	0.36892	1	12095	12095		44.377	5.1244	1	686720	+		9745	14667	5989	6018	9906	9906					0.06457701023077789
EQPMSIMFQ	9	Unmodified	_EQPMSIMFQ_					0	0	0			REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP	REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7544555664062	2	555.751553	1109.48855	0.58084	0.0003228	4.4213	0.0024572	5.0022	0.00278	555.7539321974629	13.973	0.13737	13.973	13.924	14.061	0					5	3	2	0	0	0	0.42902	1	3307	3307		39.253	3.6345	1	449420	+		9746	21246	5990	6019	9907	9907					-0.06181255780097672
EQPYGISVLR	10	Unmodified	_EQPYGISVLR_					0	0	0			REV__nc|ENSG00000076685|P49902-2|NT5C2	REV__nc|ENSG00000076685|P49902-2|NT5C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	387.87884521484375	3	387.880267	1160.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.617	1	18.617	18.117	19.117	0								0	0	0	0.39499	1	4661	4661		32.034	4.3902	1		+		9747	13252	5991	6020	9908	9908					0.04508799534755781
EQQEEASRP	9	Unmodified	_EQQEEASRP_					0	0	0		ENST00000309880.5_1_11:65122263-65123353:+|nuORF	ENST00000309880.5_1_11:65122263-65123353:+|nuORF	ENST00000309880.5_1_11:65122263-65123353:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7916259765625	2	537.246535	1072.47852	0.29312	0.00015748	-2.9159	-0.0015665	-2.6227	-0.0014091	537.2450409683092	11.607	0.19207	11.607	11.418	11.61	0					6	5	2	0	0	0	0.61124	1	2374	2374		14.137	1.1779	1	102170			9748	8541	5992	6021	9909	9909					-0.05482404189478984
EQQRLAELS	9	Unmodified	_EQQRLAELS_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7853393554688	2	537.28292	1072.55129	1.0316	0.00055425	-0.32765	-0.00017604	0.70394	0.00037821	537.2829069893115	30.751	0.22159	30.751	30.654	30.875	0					14	6	3	0	0	0	0.25716	1	10495	10495		54.776	1.8396	1	198150			9749	2335	5993	6022	9910	9910					0.017913496039454913
EQQSELRL	8	Unmodified	_EQQSELRL_					0	0	0		SRGAP3|p.S41L|1|0.31|ENSG00000196220|chr3:9124863-9124863|G/A|missense_variant	SRGAP3|p.S41L|1|0.31|ENSG00000196220|chr3:9124863-9124863|G/A|missense_variant	SRGAP3|p.S41L|1|0.31|ENSG00000196220|chr3:9124863-9124863|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7564697265625	2	501.764363	1001.51417	0.14377	7.2139E-05	0.97116	0.00048729	1.1149	0.00055943	501.76478510816605	17.415	0.073967	17.415	17.376	17.45	0					4	2	2	0	0	0	0.46013	1	4330	4330		64.207	2.0999	1	188230			9750	22489	5994	6023	9911	9911					0.013476780581868297
EQQVRVVQ	8	Unmodified	_EQQVRVVQ_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;PKD1|p.A696Rfs*18|1|0.23|ENSG00000008710|chr16:2115389-2115390|-/G|frameshift_variant;PKD1|p.V476Wfs*82|1|0.09|ENSG00000008710|chr16:2117013-2117013|C/-|frameshift_variant	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.27557373046875	2	493.274898	984.535243	2.7609	0.0013619	-0.31828	-0.000157	2.4426	0.0012049	493.274713251222	40.384	0.29466	40.384	40.283	40.578	0					9	6	2	0	0	0	0.59773	1	16044	16044		49.442	1.7842	1	170860			9751	1020	5995	6024	9912	9912					0.04235688157723416
EQREQHEDNF	10	Unmodified	_EQREQHEDNF_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	666.2833862304688	2	666.28418	1330.55381	0.24378	0.00016243	-1.1639	-0.00077547	-0.9201	-0.00061305	666.2836673502597	26.115	0.16706	26.115	26.026	26.193	0					13	6	3	0	0	0	0.41384	1	7886	7886		34.173	0	1	212290	+		9752	15666	5996	6025	9913	9913					-0.09824846729020464
EQREQHEDNF	10	Unmodified	_EQREQHEDNF_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	666.2841186523438	2	666.28418	1330.55381	-0.55459	-0.00036951	-0.079591	-5.303E-05	-0.63418	-0.00042254	666.2844014519536	26.328	0.25965	26.328	26.235	26.494	0					22	6	5	0	0	0	0.3337	1	9072	9072		34.173	0	1	1295600	+		9753	15666	5996	6025	9914	9914					-0.09824846729020464
EQREQHEDNF	10	Unmodified	_EQREQHEDNF_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	666.2832641601562	2	666.28418	1330.55381	-2.4532	-0.0016346	1.5167	0.0010105	-0.93659	-0.00062403	666.2854184255757	26.196	0.17983	26.196	26.109	26.289	0					8	4	3	0	0	0	0.48965	1	8393	8393		26.693	0	1	216490	+		9754	15666	5996	6025	9915	9915					-0.09824846729020464
EQRLRELLQ	9	Unmodified	_EQRLRELLQ_					0	0	0			REV__AluSx4_dup3234|chr5:70410088-70410380:-|1.4747745213637276|0.3747890471528333|1.98|478.0|11|3|sense	REV__AluSx4_dup3234|chr5:70410088-70410380:-|1.4747745213637276|0.3747890471528333|1.98|478.0|11|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.5631103515625	3	395.56305	1183.66732	0.40657	0.00016082	-0.21547	-8.5231E-05	0.1911	7.5593E-05	395.562972357032	18.613	0.21319	18.613	18.506	18.719	0					10	4	3	0	0	0	0.30841	1	5617	5617		49.536	7.198	1	897540	+		9755	12146	5997	6026	9916	9916					0.0828329317466796
EQRQGPPTL	9	Unmodified	_EQRQGPPTL_					0	0	0			REV__ENST00000452400.6_1_8:71126260-71128976:-|nuORF	REV__ENST00000452400.6_1_8:71126260-71128976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	342.51727294921875	3	342.517329	1024.53016	-0.74353	-0.00025467	0.2941	0.00010073	-0.44943	-0.00015394	342.51739577841624	20.79	0.10116	20.79	20.722	20.823	0					5	3	2	0	0	0	0.59802	1	5870	5870		29.17	8.2231	1	63304	+		9756	19315	5998	6027	9917	9917					0.01887384295105221
EQSLRMGEM	9	Oxidation (M)	_EQSLRMGEM(Oxidation (M))_		EQSLRMGEM(1)		EQSLRM(-60)GEM(60)	0	0	1			REV__nc|ENSG00000001631|O00522-2|KRIT1	REV__nc|ENSG00000001631|O00522-2|KRIT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7427978515625	2	548.741716	1095.46888	3.8005	0.0020855	-2.1698	-0.0011907	1.6307	0.00089481	548.7406516031169	37.682	0.35013	37.682	37.582	37.932	0					19	7	3	0	0	0	0.1115	1	14742	14742		76.774	11.309	2	799690	+		9757	12814	5999	6028	9918	9918		492			-0.075036317908598
EQSQGMQGP	9	Unmodified	_EQSQGMQGP_					0	0	0		NEK7|p.V65Sfs*5|1|0.24|ENSG00000151414|chr1:198253167-198253168|-/A|frameshift_variant;nc|ENSG00000151414|Q8TDX7-2|NEK7;ENSG00000151414|ENST00000367385|NEK7	NEK7|p.V65Sfs*5|1|0.24|ENSG00000151414|chr1:198253167-198253168|-/A|frameshift_variant	NEK7|p.V65Sfs*5|1|0.24|ENSG00000151414|chr1:198253167-198253168|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.20556640625	2	481.205824	960.397095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.84	1	14.84	14.34	15.34	0								0	0	0	0.11184	1	3705	3705		68.787	10.005	1				9758	4960	6000	6029	9919	9919					-0.0846880315305043
EQSQIQKL	8	Unmodified	_EQSQIQKL_					0	0	0			REV__ENST00000557691.1_1_14:71277363-71281997:+|nuORF	REV__ENST00000557691.1_1_14:71277363-71281997:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2690124511719	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.783	1	21.783	21.283	22.283	0								0	0	0	1.7419	1	7144	7144		131.03	12.288	1		+		9759	20260	6001	6030	9920	9920					0.03664866063570571
EQTAENKPLG	10	Unmodified	_EQTAENKPLG_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;SYNRG|p.N610Tfs*3|2|0.33|ENSG00000275066|chr17:37553894-37553894|T/-|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7752685546875	2	543.774928	1085.5353	0.60186	0.00032727	-0.41359	-0.0002249	0.18826	0.00010237	543.7747254770651	16.557	0.21615	16.557	16.401	16.617	0					7	4	2	0	0	0	0.36647	1	4618	4618		56.721	7.185	1	427810			9760	8104	6002	6031	9921	9921					-0.004043566329528403
EQTFAFQV	8	Unmodified	_EQTFAFQV_					0	0	0		ENST00000330387.10_1_7:137686484-137686628:-|nuORF	ENST00000330387.10_1_7:137686484-137686628:-|nuORF	ENST00000330387.10_1_7:137686484-137686628:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.23583984375	2	485.23745	968.460347	0.84767	0.00041132	-2.857	-0.0013863	-2.0093	-0.00097499	485.23609153638455	27.161	0.72599	27.161	26.936	27.662	0					25	14	2	0	0	0	0.51931	1	9721	9721		58.23	6.8945	1	473290			9761	8670	6003	6032	9922	9922					-0.025144943735199377
EQTFILKG	8	Unmodified	_EQTFILKG_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.263427734375	2	468.263468	934.512382	-0.12907	-6.0438E-05	-0.7678	-0.00035953	-0.89686	-0.00041997	468.2631394497152	35.332	0.1888	35.332	35.258	35.447	0					10	5	2	0	0	0	0.43813	1	13679	13679		66.429	0.96389	1	148270			9762	4096	6004	6033	9923	9923					0.04250669040231969
EQTWRLLP	8	Unmodified	_EQTWRLLP_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7875366210938	2	521.787641	1041.56073	-0.12102	-6.3145E-05	0.26798	0.00013983	0.14697	7.6686E-05	521.7876703983248	22.094	0.16449	22.094	21.989	22.153	0					8	3	3	0	0	0	0.67394	1	7439	7439		37.159	1.5408	1	272690	+		9763	21064	6005	6034	9924	9924					0.04161162680134112
EQVAVVASVGA	11	Unmodified	_EQVAVVASVGA_					0	0	0			REV__ENST00000602004.1_1_19:39616447-39616489:+|nuORF	REV__ENST00000602004.1_1_19:39616447-39616489:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2867431640625	2	515.282389	1028.55022	0.028887	1.4885E-05	3.5338	0.0018209	3.5627	0.0018358	515.2844334594383	29.969	0.21014	29.969	29.839	30.05	0					13	5	3	0	0	0	0.48922	1	10746	10746		45.022	6.2161	1	699150	+		9764	20602	6006	6035	9925	9925					0.03709135235044414
EQVEEKKKL	9	Unmodified	_EQVEEKKKL_					0	0	0		nc|ENSG00000149488|Q8TDI7-3|TMC2;TMC2|p.P719Tfs*4|1|0.36|ENSG00000149488|chr20:2617281-2617282|-/C|frameshift_variant;ENSG00000149488|ENST00000358864|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.5521545410156	3	377.552039	1129.63429	-0.12922	-4.8786E-05	0.19809	7.4791E-05	0.068879	2.6005E-05	377.55208457808845	16.598	0.38384	16.598	16.516	16.9	0					28	11	5	0	0	0	0.10506	1	3962	3962		78.264	4.0988	1	2496100			9765	4888	6007	6036	9926	9926					0.0746566633195016
EQVEEKKKL	9	Unmodified	_EQVEEKKKL_					0	0	0		nc|ENSG00000149488|Q8TDI7-3|TMC2;TMC2|p.P719Tfs*4|1|0.36|ENSG00000149488|chr20:2617281-2617282|-/C|frameshift_variant;ENSG00000149488|ENST00000358864|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.5519714355469	3	377.552039	1129.63429	0.69236	0.0002614	-0.98618	-0.00037234	-0.29382	-0.00011093	377.5519455172231	16.788	1.0015	16.788	16.681	17.683	0					57	20	5	0	0	0	0.12278	1	4709	4709		74.165	3.7664	1	39064000			9766	4888	6007	6036	9927	9927					0.0746566633195016
EQVELSRK	8	Unmodified	_EQVELSRK_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7746276855469	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.13	1	17.13	16.63	17.63	0								0	0	0	1.7419	1	4233	4233		53.351	0.41475	1				9767	1791	6008	6037	9928	9928					0.04064268437866758
EQVGPSEGRGM	11	Unmodified	_EQVGPSEGRGM_					0	0	0			REV__ENST00000426002.5_1_3:48514440-48514569:-|nuORF	REV__ENST00000426002.5_1_3:48514440-48514569:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.7640380859375	2	573.764037	1145.51352	3.3539	0.0019243	-2.1211	-0.001217	1.2328	0.00070732	573.7626177741087	48.43	0.18781	48.43	48.366	48.554	0					12	10	2	0	0	0	0.6208	1	19240	19240		35.178	2.3658	1	59010	+		9768	19110	6009	6038	9929	9929					-0.05341484653149564
EQVKEQVK	8	Unmodified	_EQVKEQVK_					0	0	0		ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.27685546875	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.373	1	17.373	16.873	17.873	0								0	0	0	1.7419	1	4889	4889		52.937	3.4007	1				9769	5461	6010	6039	9930	9930					0.04585152580625618
EQVKERLQA	9	Unmodified	_EQVKERLQA_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.806884765625	2	550.806562	1099.59857	1.6673	0.00091838	-0.7811	-0.00043024	0.88624	0.00048815	550.8060520539926	26.619	0.31869	26.619	26.509	26.828	0					13	6	3	0	0	0	0.1424	1	9563	9563		69.628	7.9363	1	901340	+		9770	16716	6011	6040	9931	9931					0.05275628874960603
EQVLHLGI	8	Unmodified	_EQVLHLGI_					0	0	0			REV__ENST00000342295.5_2_4:26434113-26434272:+|nuORF	REV__ENST00000342295.5_2_4:26434113-26434272:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.7642822265625	2	454.763635	907.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.65	1	35.65	35.15	36.15	0								0	0	0	1.7419	1	11683	11683		44.531	0.41427	1		+		9771	18457	6012	6041	9932	9932					0.055260887600866226
EQVQEQVKL	9	Unmodified	_EQVQEQVKL_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6;ZSWIM6|p.E613Rfs*5|1|0.2|ENSG00000130449|chr5:61526387-61526388|-/A|frameshift_variant;ZSWIM6|p.E613Sfs*7|1|0.32|ENSG00000130449|chr5:61526388-61526388|A/-|frameshift_variant	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8020629882812	2	550.800946	1099.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.067	1	27.067	26.567	27.567	0								0	0	0	0.19847	1	8806	8806		51.193	1.6567	1				9772	3643	6013	6042	9933	9933					0.04152806780825813
EQVRLQRGK	9	Unmodified	_EQVRLQRGK_					0	0	0		ENST00000394507.5_2_7:91874769-91874832:-|nuORF;ENST00000340022.6_2_7:91874316-91874832:-|nuORF	ENST00000394507.5_2_7:91874769-91874832:-|nuORF	ENST00000394507.5_2_7:91874769-91874832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3297729492188	2	557.327996	1112.64144	3.4938	0.0019472	-0.64403	-0.00035894	2.8497	0.0015882	557.3275692827629	35.458	0.32351	35.458	35.347	35.671	0					16	6	4	0	0	0	0.055856	1	13680	13680		93.195	13.483	1	1423400			9773	8725	6014	6043	9934	9934					0.08962443723044089
EQVVPKMNV	9	Unmodified	_EQVVPKMNV_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.782470703125	2	522.281334	1042.54812	0.084775	4.4276E-05	1.239	0.00064708	1.3237	0.00069136	522.7829011527493	32.227	0.89934	32.227	31.849	32.748	0					31	22	2	0	0	0	0.4966	1	11943	11943		32.812	3.6629	1	569490	+		9774	14108	6015	6044	9935	9935					0.02854383225599122
EQVWQLAL	8	Unmodified	_EQVWQLAL_					0	0	0			REV__ENST00000442452.1_1_7:100490234-100491508:-|nuORF	REV__ENST00000442452.1_1_7:100490234-100491508:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7665100097656	2	493.768917	985.523281	-0.74877	-0.00036972	-4.1908	-0.0020693	-4.9396	-0.002439	493.7671827385416	29.941	0.25759	29.941	29.835	30.092	0					10	5	3	0	0	0	0.53424	1	11128	11128		56.721	3.7844	1	654910	+		9775	13377	6016	6045	9936	9936					0.029940714145027414
EQWDGVRVV	9	Unmodified	_EQWDGVRVV_					0	0	0		tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1	tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1	tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2805786132812	2	544.28018	1086.54581	1.97	0.0010722	-1.0595	-0.00057667	0.91048	0.00049555	544.2796483612805	22.802	0.51082	22.802	22.55	23.061	0					15	10	3	0	0	0	0.18416	1	7785	7785		47.657	14.845	1	841610			9776	22988	6017	6046	9937	9937					0.005996708121301708
EQWPEPPHAQH	11	Unmodified	_EQWPEPPHAQH_					0	0	0		ENST00000471408.5_1_12:6649651-6659338:-|nuORF	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	678.3076782226562	2	678.31	1354.60545	-2.4525	-0.0016635	-1.2303	-0.00083451	-3.6828	-0.0024981	678.3093777744949	27.949	0.13822	27.949	27.854	27.992	0					5	3	2	0	0	0	0.75295	1	9219	9219		22.58	3.4761	1	86111			9777	9851	6018	6047	9938	9938					-0.05767058244487089
EQWRAPWED	9	Unmodified	_EQWRAPWED_					0	0	0		ENST00000547685.5_1_12:56231631-56233583:-|nuORF;ENST00000552872.5_1_12:56231631-56234980:-|nuORF;nc|ENSG00000123342|Q99542-5|MMP19	ENST00000547685.5_1_12:56231631-56233583:-|nuORF	ENST00000547685.5_1_12:56231631-56233583:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.7731323242188	2	608.772719	1215.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.3	1	11.3	10.8	11.8	0								0	0	0	0.40728	1	2280	2280		7.1934	0.45781	1				9778	10590	6019	6048	9939	9939					-0.06825821055849701
EQWVEKAL	8	Unmodified	_EQWVEKAL_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2681579589844	2	501.766374	1001.5182	0.70153	0.00035201	0.51976	0.0002608	1.2213	0.0006128	502.2680317278283	39.171	0.31237	39.171	39.066	39.378	0					22	11	4	0	0	0	0.59773	1	14919	14919		49.442	2.9848	1	140400	+		9779	14554	6020	6049	9940	9940					0.01749767551905279
ERAAFLDSL	9	Unmodified	_ERAAFLDSL_					0	0	0		nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;NLRC5|p.H1717Ifs*29|2|0.41|ENSG00000140853|chr16:57079112-57079112|C/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000539881.5_1_16:57068826-57081664:+|nuORF	nc|ENSG00000140853|Q86WI3-2|NLRC5	nc|ENSG00000140853|Q86WI3-2|NLRC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2678527832031	2	511.269281	1020.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.121	1	15.121	14.621	15.621	0								0	0	0	0.28996	1	3837	3837		37.159	11.585	1				9780	4410	6021	6050	9941	9941					0.0145686606357458
ERACPAQS	8	Carbamidomethyl (C)	_ERAC(Carbamidomethyl (C))PAQS_	ERAC(1)PAQS		ERAC(73)PAQS		0	1	0			REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7087707519531	2	459.708534	917.402514	-0.67398	-0.00030983	1.5855	0.00072887	0.91152	0.00041903	459.70918996971415	14.415	0.25032	14.415	14.327	14.578	0					12	6	3	0	0	0	0.38291	1	3509	3509		72.879	32.101	1	1101700	+		9781	15569	6022	6051	9942	9942	568				-0.059490795705983146
ERAGQTSVSL	10	Unmodified	_ERAGQTSVSL_					0	0	0		ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2788696289062	2	524.275095	1046.53564	3.433	0.0017998	0.6169	0.00032343	4.0499	0.0021233	524.2752689833247	32.007	0.71783	32.007	31.586	32.304	0					50	14	7	0	0	0	0.35046	1	11986	11986		61.691	8.7546	1	4905200			9782	1461	6023	6052	9943	9943					0.014230630868951266
ERAILRSGDL	10	Unmodified	_ERAILRSGDL_					0	0	0			REV__TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant	REV__TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.21551513671875	3	377.21565	1128.62512	-0.72108	-0.000272	-0.54405	-0.00020523	-1.2651	-0.00047723	377.215546927325	16.67	0.12471	16.67	16.62	16.744	0					7	5	2	0	0	0	0.73697	1	4059	4059		10.587	0.4829	1	88158	+		9783	17605	6024	6053	9944	9944					0.06595317766277731
ERAIPTESIT	10	Unmodified	_ERAIPTESIT_					0	0	0		nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282	nc|ENSG00000170265|Q9UDV7-2|ZNF282	nc|ENSG00000170265|Q9UDV7-2|ZNF282	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7987060546875	2	558.798403	1115.58225	-0.12573	-7.0258E-05	0.69348	0.00038752	0.56776	0.00031726	558.7988543393924	28.107	0.29493	28.107	27.98	28.275	0					16	6	4	0	0	0	0.065649	1	10253	10253		104.06	13.687	1	875710			9784	6223	6025	6054	9945	9945					0.029085029181715072
ERAKADTATA	10	Unmodified	_ERAKADTATA_					0	0	0			REV__PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant	REV__PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2665405273438	2	517.26727	1032.51999	0.37001	0.00019139	-0.90773	-0.00046954	-0.53772	-0.00027815	517.2668371823146	14.279	0.1274	14.279	14.224	14.352	0					13	5	4	0	0	0	0.64162	1	2912	2912		29.17	1.0886	1	865680	+		9785	21349	6026	6055	9946	9946					0.005027765698514486
ERALFCMAF	9	Unmodified	_ERALFCMAF_					0	0	0			REV__ENST00000463983.5_1_9:33443205-33447528:-|nuORF	REV__ENST00000463983.5_1_9:33443205-33447528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2564697265625	2	544.256805	1086.49906	0.43581	0.00023719	-0.96625	-0.00052589	-0.53044	-0.0002887	544.2562796844277	31.35	0.12764	31.35	31.304	31.432	0					8	5	2	0	0	0	0.43426	1	10378	10378		38.806	4.6336	1	72846	+		9786	16034	6027	6056	9947	9947					-0.04073228335028034
ERAQVSHSQ	9	Unmodified	_ERAQVSHSQ_					0	0	0			REV__RBM10|p.G153S|1|0.21|ENSG00000182872|chrX:47173152-47173152|G/A|missense_variant	REV__RBM10|p.G153S|1|0.21|ENSG00000182872|chrX:47173152-47173152|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.2587890625	2	521.257237	1040.49992	5.0763	0.002646	-0.5537	-0.00028862	4.5226	0.0023574	521.2567866959097	23.819	0.18615	23.819	23.709	23.895	0					13	6	3	0	0	0	0.19605	1	7199	7199		62.107	5.3864	1	181350	+		9787	21448	6028	6057	9948	9948					-0.01870974370103795
ERARLEGELK	10	Unmodified	_ERARLEGELK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.8381958007812	2	600.838394	1199.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.533	1	16.533	16.033	17.033	0								0	0	0	0.3598	1	4742	4742		41.427	4.2675	1				9788	6773	6029	6058	9949	9949					0.07038989312013655
ERAWVDTSI	9	Unmodified	_ERAWVDTSI_					0	0	0			REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.774169921875	2	538.772188	1075.52982	2.0154	0.0010858	1.353	0.00072897	3.3684	0.0018148	538.773386218632	26.816	0.30565	26.816	26.715	27.021	0					18	7	4	0	0	0	0.27249	1	9306	9306		52.937	1.744	1	986100	+		9789	12784	6030	6059	9950	9950					-0.004920354247587966
ERAWVDTSI	9	Unmodified	_ERAWVDTSI_					0	0	0			REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	REV__EIF4A3|p.G340E|1|0.17|ENSG00000141543|chr17:80136300-80136300|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7747802734375	2	538.772188	1075.52982	0.69009	0.0003718	3.588	0.0019331	4.2781	0.0023049	538.7742818041706	26.813	0.36536	26.813	26.705	27.07	0					13	7	3	0	0	0	0.25716	1	9508	9508		54.776	3.4409	1	718330	+		9790	12784	6030	6059	9951	9951					-0.004920354247587966
ERCYDFKMC	9	Unmodified	_ERCYDFKMC_					0	0	0		sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	597.7396850585938	2	597.740662	1193.46677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.784	1	14.784	14.284	15.284	0								0	0	0	0.3428	1	3102	3102		26.693	3.6504	1				9791	22477	6031	6060	9952	9952					-0.1222238380030376
ERDDRKKK	8	Unmodified	_ERDDRKKK_					0	0	0		RBM27|p.G113D|1|0.29|ENSG00000091009|chr5:146228980-146228980|G/A|missense_variant	RBM27|p.G113D|1|0.29|ENSG00000091009|chr5:146228980-146228980|G/A|missense_variant	RBM27|p.G113D|1|0.29|ENSG00000091009|chr5:146228980-146228980|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.8048095703125	2	537.804354	1073.59415	0.22344	0.00012017	0.59981	0.00032258	0.82326	0.00044275	537.8046547866061	11.74	0.11411	11.74	11.677	11.791	0					10	4	3	0	0	0	0.50061	1	2327	2327		49.442	10.635	1	412510			9792	12009	6032	6061	9953	9953					0.06030164452022291
ERDLLVIA	8	Unmodified	_ERDLLVIA_					0	0	0			REV__nc|ENSG00000114491|P11172-3|UMPS	REV__nc|ENSG00000114491|P11172-3|UMPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7765197753906	2	464.776742	927.538931	-0.77153	-0.00035859	0.12279	5.7069E-05	-0.64875	-0.00030152	464.77679995545026	34.475	0.2625	34.475	34.399	34.661	0					14	11	2	0	0	0	0.6282	1	11625	11625		44.531	5.7249	1	133050	+		9793	14072	6033	6062	9954	9954					0.07226357931551775
ERDMIKELQ	9	Unmodified	_ERDMIKELQ_					0	0	0			REV__ENST00000264167.8_1_2:178364445-178370280:+|nuORF	REV__ENST00000264167.8_1_2:178364445-178370280:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.2976684570312	2	581.300255	1160.58596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.836	1	12.836	12.336	13.336	0								0	0	0	0.38404	1	2986	2986		15.642	0.77694	1		+		9794	18057	6034	6063	9955	9955					0.012088494204135714
ERDRFFLL	8	Unmodified	_ERDRFFLL_					0	0	0			REV__ENST00000494296.1_1_21:30445560-30445752:-|nuORF	REV__ENST00000494296.1_1_21:30445560-30445752:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.30126953125	2	548.300916	1094.58728	0.5154	0.00028259	0.047682	2.6144E-05	0.56308	0.00030874	548.300733822186	33.942	0.44897	33.942	33.812	34.261	0					17	9	4	0	0	0	0.6282	1	12956	12956		44.531	3.7529	1	190330	+		9795	19749	6035	6064	9956	9956					0.0437685157148735
ERDTKEAIAN	10	Unmodified	_ERDTKEAIAN_					0	0	0		ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.8075561523438	2	573.791109	1145.56767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.083	1	17.083	16.583	17.583	0								0	0	0	0.4146	1	4186	4186		26.063	3.4837	1				9796	3831	6036	6065	9957	9957					0.0007043077005164378
EREAGPAPTQQ	11	Unmodified	_EREAGPAPTQQ_					0	0	0			REV__nc|ENSG00000112425|B3EWF7|EPM2A	REV__nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.2897338867188	2	592.288734	1182.56291	1.5244	0.00090288	0.26425	0.00015651	1.7886	0.0010594	592.2888498361448	14.275	0.30064	14.275	14.12	14.42	0					11	6	3	0	0	0	0.59204	1	3678	3678		37.508	2.3561	1	446170	+		9797	20976	6037	6066	9958	9958					-0.021064533726985246
EREFLVTR	8	Unmodified	_EREFLVTR_					0	0	0			REV__ENST00000488997.1_1_2:242752523-242755987:+|nuORF	REV__ENST00000488997.1_1_2:242752523-242755987:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2908935546875	2	525.290548	1048.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.929	1	17.929	17.429	18.429	0								0	0	0	1.7419	1	4575	4575		34.173	5.023	1		+		9798	17465	6038	6067	9959	9959					0.044202611917853574
EREGKKISGA	10	Unmodified	_EREGKKISGA_					0	0	0			REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7932739257812	2	537.798737	1073.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.723	1	15.723	15.223	16.223	0								0	0	0	0.30854	1	4120	4120		49.536	0	1		+		9799	12512	6039	6068	9960	9960					0.04907342357910238
ERELERKL	8	Unmodified	_ERELERKL_					0	0	0			REV__CCPG1|p.K422Rfs*3|1|0.21|ENSG00000260916|chr15:55360508-55360508|T/-|frameshift_variant	REV__CCPG1|p.K422Rfs*3|1|0.21|ENSG00000260916|chr15:55360508-55360508|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8089599609375	2	536.809105	1071.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.123	1	17.123	16.623	17.623	0								0	0	0	1.7419	1	4023	4023		32.812	1.2826	1		+		9800	12375	6040	6069	9961	9961					0.07071932737562747
EREQQKRLE	9	Unmodified	_EREQQKRLE_					0	0	0			REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.8861389160156	3	405.886192	1214.63675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.888	1	14.888	14.388	15.388	0								0	0	0	0.13425	1	3727	3727		63.534	5.2876	1		+		9801	15566	6041	6070	9962	9962					0.03801514789643079
EREQQKRLE	9	Unmodified	_EREQQKRLE_					0	0	0			REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.8860168457031	3	405.886192	1214.63675	0.045956	1.8653E-05	-0.45756	-0.00018572	-0.41161	-0.00016707	405.88606719225356	14.854	0.11296	14.854	14.797	14.91	0					4	2	2	0	0	0	0.25761	1	3955	3955		54.722	5.1863	1	222920	+		9802	15566	6041	6070	9963	9963					0.03801514789643079
EREQQKRLE	9	Unmodified	_EREQQKRLE_					0	0	0			REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	REV__TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.8859558105469	3	405.886192	1214.63675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.844	1	14.844	14.344	15.344	0								0	0	0	0.2595	1	3784	3784		42.338	0	1		+		9803	15566	6041	6070	9964	9964					0.03801514789643079
ERERRAASRGA	11	Unmodified	_ERERRAASRGA_					0	0	0		ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.2295227050781	3	420.228953	1257.66503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.229	1	16.229	15.729	16.729	0								0	0	0	0.45003	1	4356	4356		25.892	0.76573	1				9804	8435	6042	6071	9965	9965					0.046502574895384896
ERERREKEI	9	Unmodified	_ERERREKEI_					0	0	0			REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.561767578125	3	415.561709	1243.6633	0.065439	2.7194E-05	-0.20368	-8.464E-05	-0.13824	-5.7446E-05	415.56166020120315	14.951	0.27044	14.951	14.893	15.164	0					8	5	3	0	0	0	0.35021	1	4001	4001		45.972	1.5951	1	274020	+		9805	14251	6043	6072	9966	9966					0.051212036809374695
EREYLQSL	8	Unmodified	_EREYLQSL_					0	0	0			REV__EXOC1|p.R416Q|1|0.27|ENSG00000090989|chr4:55883845-55883845|G/A|missense_variant	REV__EXOC1|p.R416Q|1|0.27|ENSG00000090989|chr4:55883845-55883845|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2667846679688	2	519.266739	1036.51892	1.624	0.00084327	-0.90544	-0.00047017	0.71852	0.0003731	519.2660274254683	42.034	0.18367	42.034	41.954	42.138	0					12	8	2	0	0	0	0.5535	1	16511	16511		54.776	0	1	97831	+		9806	20650	6044	6073	9967	9967					0.002125622009543804
ERFEELAQ	8	Unmodified	_ERFEELAQ_					0	0	0			REV__nc|ENSG00000144320|Q9C0E8-2|LNPK	REV__nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.248291015625	2	511.251089	1020.48762	-1.7577	-0.00089864	-2.4587	-0.001257	-4.2164	-0.0021556	511.24970019528473	16.468	0.24203	16.468	16.394	16.636	0					11	6	3	0	0	0	0.67836	1	3904	3904		34.173	0.65696	1	271690	+		9807	15227	6045	6074	9968	9968					-0.021800108331376578
ERFTRQAD	8	Unmodified	_ERFTRQAD_					0	0	0			REV__nc|ENSG00000181085|Q8TD08-2|MAPK15	REV__nc|ENSG00000181085|Q8TD08-2|MAPK15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	341.50531005859375	3	341.505312	1021.49411	0.21542	7.3567E-05	-0.54527	-0.00018621	-0.32985	-0.00011264	341.5050548343346	14.914	0.15396	14.914	14.875	15.029	0					9	6	2	0	0	0	0.73426	1	3157	3157		31.53	3.4483	1	31706	+		9808	16836	6046	6075	9969	9969					-0.01578072881773096
ERGASQPSCCL	11	Unmodified	_ERGASQPSCCL_					0	0	0		nc|ENSG00000243156|Q7RTP6-3|MICAL3	nc|ENSG00000243156|Q7RTP6-3|MICAL3	nc|ENSG00000243156|Q7RTP6-3|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.2550659179688	2	575.752615	1149.49068	-0.28923	-0.00016652	3.257	0.0018752	2.9678	0.0017087	575.7530509360116	30.519	0.38619	30.519	30.384	30.77	0					16	8	4	0	0	0	0.70609	1	11456	11456		27.047	6.1004	1	181450			9809	11786	6047	6076	9970	9970					-0.07808827042276789
ERGGRGKRK	9	Unmodified	_ERGGRGKRK_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.5450134277344	3	348.544212	1042.61081	3.0333	0.0010572	-0.63383	-0.00022092	2.3994	0.00083631	348.54405223405365	12.478	0.20773	12.478	12.319	12.526	0					12	6	3	0	0	0	0.18416	1	2667	2667		63.534	8.8115	1	465330	+		9810	17717	6048	6077	9971	9971					0.09120710128649989
ERGGVVTSNPL	11	Unmodified	_ERGGVVTSNPL_					0	0	0		nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;ENST00000578711.1_1_17:7128236-7128413:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF	nc|ENSG00000072778|P49748-2|ACADVL	nc|ENSG00000072778|P49748-2|ACADVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.8043823242188	2	564.80402	1127.59349	0.3439	0.00019424	0.50111	0.00028303	0.84501	0.00047727	564.8042440878589	31.716	0.25913	31.716	31.601	31.86	0					16	6	4	0	0	0	0.66391	1	11569	11569		31.068	1.5174	1	423460			9811	1500	6049	6078	9972	9972					0.03479325012312984
ERGIPSLPC	9	Unmodified	_ERGIPSLPC_					0	0	0		nc|ENSG00000107954|O76050-2|NEURL1;ENSG00000107954|ENST00000369780|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2519836425781	2	486.252577	970.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.675	1	23.675	23.175	24.175	0								0	0	0	0.3304	1	7264	7264		29.15	0	1				9812	2506	6050	6079	9973	9973					0.004175410200105034
ERGKVRAIQ	9	Unmodified	_ERGKVRAIQ_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.8187255859375	2	528.817264	1055.61998	1.2411	0.0006563	1.1316	0.00059842	2.3727	0.0012547	528.8179651579699	17.052	0.084808	17.052	16.999	17.084	0					4	2	2	0	0	0	0.48389	1	4178	4178		34.173	2.6427	1	27657			9813	6216	6051	6080	9974	9974					0.09439058694306368
ERGLTGIKG	9	Unmodified	_ERGLTGIKG_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7739562988281	2	465.771991	929.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.902	1	11.902	11.402	12.402	0								0	0	0	0.31838	1	2393	2393		31.53	0	1				9814	7227	6052	6081	9975	9975					0.06184589646045424
ERGNKIRESI	10	Unmodified	_ERGNKIRESI_					0	0	0			REV__ENST00000263253.8_1_22:41488962-41489055:+|nuORF	REV__ENST00000263253.8_1_22:41488962-41489055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.226318359375	3	401.226438	1200.65748	0.94114	0.00037761	-1.0794	-0.00043307	-0.13822	-5.5459E-05	401.2260359443684	21.657	0.31612	21.657	21.564	21.881	0					12	7	2	0	0	0	0.59255	1	6952	6952		35.178	2.4277	1	415230	+		9815	18045	6053	6082	9976	9976					0.06518105169266164
ERGQAGKHSR	10	Unmodified	_ERGQAGKHSR_					0	0	0			REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.2990112304688	2	563.297227	1124.5799	3.4697	0.0019545	-0.38606	-0.00021746	3.0837	0.001737	563.2969995440625	14.483	0.21667	14.483	14.375	14.592	0					5	4	2	0	0	0	0.41384	1	3628	3628		54.722	54.722	1	1532900	+		9816	19783	6054	6083	9977	9977					0.022595120237383526
ERGRGEKR	8	Unmodified	_ERGRGEKR_					0	0	0			REV__ENST00000548860.5_1_12:49209223-49210729:+|nuORF	REV__ENST00000548860.5_1_12:49209223-49210729:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2770690917969	2	494.275764	986.536974	2.8006	0.0013843	-0.48246	-0.00023847	2.3181	0.0011458	494.27563434015707	20.12	0.56445	20.12	20.011	20.575	0					37	11	4	0	0	0	0.51384	1	6345	6345		58.782	58.782	1	27844000	+		9817	20184	6055	6084	9978	9978					0.043167419663291184
ERHMARSPS	9	Unmodified	_ERHMARSPS_					0	0	0			REV__ENST00000577399.5_1_17:37558585-37558747:-|nuORF	REV__ENST00000577399.5_1_17:37558585-37558747:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.762451171875	2	535.761632	1069.50871	0.29155	0.0001562	0.57944	0.00031044	0.87099	0.00046664	535.7622559425989	13.965	0.11819	13.965	13.906	14.024	0					4	2	2	0	0	0	0.51991	1	3534	3534		30.318	0.47618	1	153750	+		9818	20426	6056	6085	9979	9979					-0.023263240052756373
ERIIAPMRWGL	11	Unmodified	_ERIIAPMRWGL_					0	0	0		HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant;ENSG00000183624|ENST00000383463|HMCES	HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant	HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	671.3778076171875	2	671.376632	1340.73871	1.4101	0.00094671	0.35676	0.00023952	1.7669	0.0011862	671.3767839152932	24.626	0.4411	24.626	24.395	24.836	0					45	15	4	0	0	0	0.72624	1	7497	7497		25.126	0.6068	1	976370			9819	6972	6057	6086	9980	9980					0.08197089607665475
ERIIHSIM	8	Oxidation (M)	_ERIIHSIM(Oxidation (M))_		ERIIHSIM(1)		ERIIHSIM(44)	0	0	1			REV__ENSG00000058335|ENST00000558480|RASGRF1;REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000058335|ENST00000558480|RASGRF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.7721862792969	2	507.773677	1013.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.576	1	32.576	32.076	33.076	0								0	0	0	1.7419	1	10538	10538		44.117	13.613	1		+		9820	13071;14036	6058	6087	9981	9981		505			0.026575164284054154
ERITDVEYL	9	Unmodified	_ERITDVEYL_					0	0	0		ENST00000343986.8_1_20:60963522-60963555:+|nuORF	ENST00000343986.8_1_20:60963522-60963555:+|nuORF	ENST00000343986.8_1_20:60963522-60963555:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2937622070312	2	569.292953	1136.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.342	1	34.342	33.842	34.842	0								0	0	0	0.27025	1	13230	13230		40.778	0.20554	1				9821	8754	6059	6088	9982	9982					0.008531005438953798
ERKCRRTF	8	Unmodified	_ERKCRRTF_					0	0	0			REV__ENST00000237163.9_1_6:83839045-83839090:+|nuORF	REV__ENST00000237163.9_1_6:83839045-83839090:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2973022460938	2	548.295642	1094.57673	1.7814	0.00097671	0.8456	0.00046364	2.627	0.0014403	548.2962957871556	36.693	0.43676	36.693	36.564	37	0					37	13	5	0	0	0	0.59773	1	14293	14293		49.442	49.442	1	2892000	+		9822	17923	6060	6089	9983	9983					0.03322545645391983
ERKEFLVR	8	Unmodified	_ERKEFLVR_					0	0	0		sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1;sp|F5HAY6|VICA_HCMVMViralinhibitorofcaspase-8-inducedapoptosisOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL36PE=1SV=1	sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1	sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.20001220703125	3	359.545219	1075.61383	0.7257	0.00026092	-0.68801	-0.00024737	0.037688	1.3551E-05	359.54502214091775	14.341	0.32693	14.341	14.223	14.55	0					13	8	2	0	0	0	0.70598	1	3433	3433		32.812	3.6424	1	1345400			9823	22438	6061	6090	9984	9984					0.07904540462800469
ERKKERHHL	9	Unmodified	_ERKKERHHL_					0	0	0			REV__ENST00000453426.1_1_6:32813264-32813414:+|nuORF	REV__ENST00000453426.1_1_6:32813264-32813414:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.57061767578125	3	411.570539	1231.68979	0.58742	0.00024177	-1.1137	-0.00045836	-0.52626	-0.00021659	411.5701980458532	12.914	0.072105	12.914	12.848	12.92	0					4	2	2	0	0	0	0.55379	1	2812	2812		41.427	15.363	1	47195	+		9824	19329	6062	6091	9985	9985					0.08320937362964287
ERKKRADRKM	10	Oxidation (M)	_ERKKRADRKM(Oxidation (M))_		ERKKRADRKM(1)		ERKKRADRKM(46)	0	0	1			REV__ENST00000452148.2_1_9:97321391-97329922:+|nuORF	REV__ENST00000452148.2_1_9:97321391-97329922:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.25390625	3	445.254222	1332.74084	-0.46113	-0.00020532	-0.51164	-0.00022781	-0.97277	-0.00043313	445.25402527283654	19.952	0.32052	19.952	19.791	20.111	0					17	6	5	0	0	0	0.48965	1	6242	6242		46.457	12.37	1	1624400	+		9825	19313	6063	6092	9986	9986		710			0.08777518345459612
ERKKRLGPG	9	Unmodified	_ERKKRLGPG_					0	0	0		ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.8225708007812	2	520.819807	1039.62506	3.377	0.0017588	0.73134	0.0003809	4.1084	0.0021397	520.8205046771437	33.796	0.41806	33.796	33.716	34.134	0					15	9	2	0	0	0	0.54267	1	12892	12892		27.882	0	1	605100			9826	2355	6064	6093	9987	9987					0.10683362556960674
ERKPGPTK	8	Unmodified	_ERKPGPTK_					0	0	0			REV__TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	REV__TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.766357421875	2	456.766709	911.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.065	1	12.065	11.565	12.565	0								0	0	0	1.7419	1	2480	2480		44.117	6.9577	1		+		9827	13604	6065	6094	9988	9988					0.05956606991617264
ERKRPKNI	8	Unmodified	_ERKRPKNI_					0	0	0		IGSF3|p.S394R|1|0.18|ENSG00000143061|chr1:116607982-116607982|G/T|missense_variant	IGSF3|p.S394R|1|0.18|ENSG00000143061|chr1:116607982-116607982|G/T|missense_variant	IGSF3|p.S394R|1|0.18|ENSG00000143061|chr1:116607982-116607982|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.821044921875	2	520.819807	1039.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.602	1	33.602	33.102	34.102	0								0	0	0	1.7419	1	11812	11812		45.952	7.1458	1				9828	11218	6066	6095	9989	9989					0.10683362556937936
ERKSSSTAP	9	Unmodified	_ERKSSSTAP_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20;TCF20|p.G1028Efs*6|1|0.09|ENSG00000100207|chr22:42212223-42212223|C/-|frameshift_variant;TCF20|p.L1388Efs*6|1|0.17|ENSG00000100207|chr22:42211143-42211144|AA/-|frameshift_variant;TCF20|p.L1424Gfs*21|1|0.32|ENSG00000100207|chr22:42211037-42211038|-/TCCT|frameshift_variant;TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant;TCF20|p.K1579Nfs*36|1|0.18|ENSG00000100207|chr22:42210569-42210569|T/-|frameshift_variant;TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7483825683594	2	481.748713	961.482873	-0.11429	-5.5059E-05	-0.59443	-0.00028636	-0.70872	-0.00034142	481.7483996382226	17.339	0.48368	17.339	17.213	17.696	0					23	12	4	0	0	0	0.098791	1	4859	4859		79.713	2.395	1	4371500			9829	1983	6067	6096	9990	9990					0.0005910502409278706
ERKTNQSL	8	Unmodified	_ERKTNQSL_					0	0	0			REV__CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant	REV__CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.263671875	2	488.26453	974.514508	-0.37922	-0.00018516	-1.7634	-0.00086099	-2.1426	-0.0010462	488.26379357378306	17.409	0.16853	17.409	17.331	17.499	0					7	4	2	0	0	0	0.5676	1	4906	4906		53.351	3.9099	1	606390	+		9830	12378	6068	6097	9991	9991					0.026230977780414833
ERKYAIEDLK	10	Unmodified	_ERKYAIEDLK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	632.816162109375	2	632.848427	1263.6823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.513	1	35.513	35.013	36.013	0								0	0	0	0.3598	1	12658	12658		41.427	0	1				9831	3690	6069	6098	9992	9992					0.061007402519635434
ERLDKSEL	8	Unmodified	_ERLDKSEL_					0	0	0		ENST00000543087.5_1_11:18512432-18536353:-|nuORF	ENST00000543087.5_1_11:18512432-18536353:-|nuORF	ENST00000543087.5_1_11:18512432-18536353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2664489746094	2	495.266739	988.518924	0.74255	0.00036776	-1.2187	-0.00060359	-0.47617	-0.00023583	495.2661004091791	20.895	0.14308	20.895	20.799	20.942	0					10	3	4	0	0	0	0.28427	1	6551	6551		87.754	0.057861	1	561630			9832	10557	6070	6099	9993	9993					0.024205622009503713
ERLFPAAIPS	10	Unmodified	_ERLFPAAIPS_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|16|2|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|16|2|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|16|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.80712890625	2	550.808574	1099.60259	0.3054	0.00016822	-3.2859	-0.0018099	-2.9805	-0.0016417	550.8068971070522	22.401	0.12331	22.401	22.355	22.479	0					6	3	2	0	0	0	0.42408	1	6600	6600		58.23	26.7	1	120950			9833	22502	6071	6100	9994	9994					0.056777183686335775
ERLGDPDEM	9	Unmodified	_ERLGDPDEM_					0	0	0			REV__nc|ENSG00000135409|Q16671-3|AMHR2	REV__nc|ENSG00000135409|Q16671-3|AMHR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2310180664062	2	531.232039	1060.44952	0.1193	6.3374E-05	-2.2137	-0.001176	-2.0944	-0.0011126	531.2310371092503	13.212	0.27538	13.212	13.142	13.417	0					11	7	2	0	0	0	0.37197	1	2953	2953		44.117	1.7207	1	1550200	+		9834	21029	6072	6101	9995	9995					-0.07828264810132168
ERLHVTKYHVR	11	Unmodified	_ERLHVTKYHVR_					0	0	0			REV__ENST00000418777.5_1_9:16418989-16435690:-|nuORF	REV__ENST00000418777.5_1_9:16418989-16435690:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	719.404296875	2	719.407309	1436.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.768	1	31.768	31.268	32.268	0								0	0	0	0.45674	1	12012	12012		22.58	3.4761	1		+		9835	16489	6073	6102	9996	9996					0.09913737631291042
ERLLCYGW	8	Unmodified	_ERLLCYGW_					0	0	0		nc|ENSG00000174407|Q9H1L0|MIR1-1HG	nc|ENSG00000174407|Q9H1L0|MIR1-1HG	nc|ENSG00000174407|Q9H1L0|MIR1-1HG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2565307617188	2	520.25512	1038.49569	4.979	0.0025903	-1.5776	-0.00082075	3.4014	0.0017696	520.2542300262817	25.947	0.30336	25.947	25.771	26.075	0					13	6	3	0	0	0	0.3961	1	8090	8090		83.287	17.822	1	496840			9836	11652	6074	6103	9997	9997					-0.022021551173565967
ERLQEVMEG	9	Unmodified	_ERLQEVMEG_					0	0	0			REV__ENSG00000189350|ENST00000379558|TOGARAM2	REV__ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.760498046875	2	545.763506	1089.51246	-1.4986	-0.00081789	-4.0464	-0.0022084	-5.545	-0.0030263	545.7611204836753	19.054	0.19246	19.054	18.958	19.151	0					6	4	2	0	0	0	0.10915	1	5088	5088		77.318	11.852	1	93790	+		9837	17220	6075	6104	9998	9998					-0.028716990220800653
ERLSPLASSSR	11	Unmodified	_ERLSPLASSSR_					0	0	0		ENST00000380738.8_1_9:15506621-15510932:-|nuORF;ENST00000380733.8_1_9:15506621-15511001:-|nuORF	ENST00000380738.8_1_9:15506621-15510932:-|nuORF	ENST00000380738.8_1_9:15506621-15510932:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.8287963867188	2	601.828026	1201.6415	-0.25957	-0.00015622	0.78059	0.00046978	0.52102	0.00031356	601.828507089356	20.481	0.14488	20.481	20.419	20.564	0					10	3	4	0	0	0	0.65797	1	6389	6389		31.634	4.9414	1	559930			9838	9100	6076	6105	9999	9999					0.04874398932361146
ERLVKKSN	8	Unmodified	_ERLVKKSN_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2932434082031	2	487.293091	972.571629	-0.70051	-0.00034136	0.54427	0.00026522	-0.15624	-7.6137E-05	487.29341003284264	51.709	0.17223	51.709	51.647	51.82	0					14	10	2	0	0	0	0.79567	1	19171	19171		17.365	0	1	54295	+		9839	14103	6077	6106	10000	10000					0.08424565054417599
ERMIAILSEN	10	Unmodified	_ERMIAILSEN_					0	0	0		nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.541015625	3	392.541146	1174.60161	-0.16195	-6.3571E-05	-0.18138	-7.1199E-05	-0.34333	-0.00013477	392.54116717252657	28.523	0.29461	28.523	28.435	28.73	0					18	7	4	0	0	0	0.64646	1	10095	10095		28.577	0.49524	1	609270			9840	7079	6078	6107	10001	10001					0.021291359374572494
ERNANLVAC	9	Unmodified	_ERNANLVAC_					0	0	0		ENST00000544551.5_1_11:110101225-110101387:-|nuORF	ENST00000544551.5_1_11:110101225-110101387:-|nuORF	ENST00000544551.5_1_11:110101225-110101387:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.24560546875	2	495.245283	988.476014	-0.75949	-0.00037613	1.6009	0.00079285	0.84144	0.00041672	495.2460045793614	12.747	0.10143	12.747	12.699	12.801	0					4	2	2	0	0	0	0.59802	1	2954	2954		21.96	2.5999	1	1236400			9841	10566	6079	6108	10002	10002					-0.018685311281274153
ERNLPGKQF	9	Unmodified	_ERNLPGKQF_					0	0	0			REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7965698242188	2	544.795998	1087.57744	1.9523	0.0010636	-2.6495	-0.0014434	-0.6972	-0.00037983	544.7954282089386	38.827	0.13718	38.827	38.734	38.871	0					8	5	2	0	0	0	0.41113	1	15261	15261		40.778	2.9666	1	50356	+		9842	16527	6080	6109	10003	10003					0.03715663566094918
ERNNLMRL	8	Unmodified	_ERNNLMRL_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-4|TRPM6;TRPM6|p.E1956Kfs*25|1|0.33|ENSG00000119121|chr9:74728308-74728308|C/-|frameshift_variant;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	ENSG00000092439|ENST00000646667|TRPM7;nc|ENSG00000119121|Q9BX84-4|TRPM6	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.283447265625	2	523.2822	1044.54985	0.47915	0.00025073	2.8606	0.0014969	3.3398	0.0017477	523.2833186935794	37.83	0.16155	37.83	37.759	37.921	0					13	9	2	0	0	0	0.66372	1	12774	12774		38.806	6.8513	1	45053			9843	1875;3097	6081	6110	10004	10004					0.029354370341934555
ERNNTRLL	8	Unmodified	_ERNNTRLL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;nc|ENSG00000143847|O75335|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;PPFIA2|p.F632Lfs*18|1|0.39|ENSG00000139220|chr12:81353217-81353217|A/-|frameshift_variant;PPFIA2|p.H786Lfs*48|1|0.16|ENSG00000139220|chr12:81341113-81341116|GTGA/-|frameshift_variant;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;PPFIA3|p.S658Pfs*70|1|0.24|ENSG00000177380|chr19:49138317-49138317|C/-|frameshift_variant	nc|ENSG00000131626|Q13136-2|PPFIA1;PPFIA2|p.F632Lfs*18|1|0.39|ENSG00000139220|chr12:81353217-81353217|A/-|frameshift_variant;PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant	PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.28765869140625	2	508.285797	1014.55704	-0.096943	-4.9275E-05	4.0466	0.0020568	3.9496	0.0020075	508.28807011966325	17.287	0.13213	17.287	17.229	17.361	0					7	4	2	0	0	0	0.70598	1	4090	4090		32.812	1.2826	1	49822			9844	6661;4317;3729	6082	6111	10005	10005					0.050344929062816846
ERPEPNAVW	9	Unmodified	_ERPEPNAVW_					0	0	0			REV__ENST00000590740.2_2_17:41322312-41322399:-|nuORF	REV__ENST00000590740.2_2_17:41322312-41322399:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2726440429688	2	549.272355	1096.53016	0.24243	0.00013316	-0.81901	-0.00044986	-0.57658	-0.0003167	549.2719904977534	18.335	0.32053	18.335	18.122	18.443	0					18	6	5	0	0	0	0.59802	1	5596	5596		21.96	1.013	1	1071800	+		9845	20524	6083	6112	10006	10006					-0.01424615704900134
ERPFDQTSI	9	Unmodified	_ERPFDQTSI_					0	0	0			REV__nc|ENSG00000087303|Q14112-2|NID2	REV__nc|ENSG00000087303|Q14112-2|NID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7705078125	2	546.769645	1091.52474	0.44161	0.00024146	0.83468	0.00045638	1.2763	0.00069784	546.7700695555881	32.135	0.33647	32.135	31.966	32.303	0					20	8	3	0	0	0	0.10915	1	11738	11738		77.318	6.0219	1	422670	+		9846	13383	6084	6113	10007	10007					-0.017363392873676275
ERPPEKLYRWQ	11	Unmodified	_ERPPEKLYRWQ_					0	0	0			REV__VSTM2B|p.W66R|1|0.34|ENSG00000187135|chr19:29527324-29527324|T/C|missense_variant	REV__VSTM2B|p.W66R|1|0.34|ENSG00000187135|chr19:29527324-29527324|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	751.3983764648438	2	751.39915	1500.78375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.403	1	34.403	33.903	34.903	0								0	0	0	0.45674	1	11601	11601		12.207	2.501	1		+		9847	22281	6085	6114	10008	10008					0.0533861167455143
ERPRRQRPTRP	11	Unmodified	_ERPRRQRPTRP_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.6159362792969	3	483.61503	1447.82326	-0.59436	-0.00028744	1.7131	0.00082849	1.1187	0.00054104	483.6159188741811	17.345	0.20324	17.345	17.192	17.396	0					11	4	3	0	0	0	0.76133	1	4998	4998		21.78	3.9473	1	139450			9848	3044	6086	6115	10009	10009					0.11726176468641825
ERPTSYKLS	9	Unmodified	_ERPTSYKLS_					0	0	0			REV__PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant	REV__PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7885131835938	2	540.787838	1079.56112	0.6563	0.00035492	3.7887	0.0020489	4.445	0.0024038	540.7898616118354	24.779	0.25603	24.779	24.628	24.884	0					15	5	4	0	0	0	0.1424	1	8579	8579		69.628	4.1622	1	802140	+		9849	14707	6087	6116	10010	10010					0.024525376093151863
ERQDGGGSLT	10	Unmodified	_ERQDGGGSLT_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.24212646484375	2	510.241252	1018.46795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.219	1	17.219	16.719	17.719	0								0	0	0	0.4044	1	4247	4247		29.17	1.2878	1		+		9850	13016	6088	6117	10011	10011					-0.0405438684388173
ERRGLKRS	8	Unmodified	_ERRGLKRS_					0	0	0		ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.300537109375	2	501.301781	1000.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.877	1	19.877	19.377	20.377	0								0	0	0	1.7419	1	5484	5484		31.955	5.2619	1				9851	2752	6089	6118	10012	10012					0.08873905380085034
ERRGSPVSPV	10	Unmodified	_ERRGSPVSPV_					0	0	0		FAM83H|p.P917S|1|0.14|ENSG00000180921|chr8:143726712-143726712|G/A|missense_variant	FAM83H|p.P917S|1|0.14|ENSG00000180921|chr8:143726712-143726712|G/A|missense_variant	FAM83H|p.P917S|1|0.14|ENSG00000180921|chr8:143726712-143726712|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.86956787109375	3	361.868362	1082.58326	3.1179	0.0011283	0.24708	8.941E-05	3.365	0.0012177	361.86846735981385	33.177	0.55777	33.177	33.076	33.633	0					23	11	4	0	0	0	0.50287	1	12595	12595		45.022	15.852	1	2315800			9852	11132	6090	6119	10013	10013					0.04526762077762214
ERRLLVAES	9	Unmodified	_ERRLLVAES_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8099975585938	2	536.809105	1071.60366	1.3523	0.00072595	-0.44363	-0.00023815	0.9087	0.0004878	536.8091908838072	28.335	0.20251	28.335	28.248	28.451	0					14	6	3	0	0	0	0.61124	1	8824	8824		17.468	0.10304	1	129340			9853	3919	6091	6120	10014	10014					0.07071932737562747
ERRPRGLQ	8	Unmodified	_ERRPRGLQ_					0	0	0		ENST00000316286.13_1_7:148768550-148768973:-|nuORF	ENST00000316286.13_1_7:148768550-148768973:-|nuORF	ENST00000316286.13_1_7:148768550-148768973:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.8641357421875	3	337.865063	1010.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.101	1	13.101	12.601	13.601	0								0	0	0	1.7419	1	2957	2957		27.882	3.3631	1				9854	8582	6092	6121	10015	10015					0.06849618863043361
ERRPVLPQ	8	Unmodified	_ERRPVLPQ_					0	0	0		ENST00000551801.1_1_14:105857872-105861006:+|nuORF;ENST00000548796.1_1_14:105857553-105859601:+|nuORF	ENST00000551801.1_1_14:105857872-105861006:+|nuORF	ENST00000551801.1_1_14:105857872-105861006:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7937927246094	2	497.793258	993.571963	0.55996	0.00027874	-1.0551	-0.00052524	-0.49517	-0.00024649	497.7929355185114	22.315	0.49023	22.315	21.972	22.463	0					15	11	2	0	0	0	0.60719	1	7180	7180		47.916	5.4411	1	126480			9855	10600	6093	6122	10016	10016					0.07491984774276261
ERRVLLTAS	9	Unmodified	_ERRVLLTAS_					0	0	0		ENST00000592543.5_1_19:6476783-6477092:-|nuORF;DENND1C|p.G479Afs*3|2|0.28|ENSG00000205744|chr19:6468925-6468925|C/-|frameshift_variant;DENND1C|p.S553Lfs*8|1|0.17|ENSG00000205744|chr19:6468369-6468369|C/-|frameshift_variant;nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C	ENST00000592543.5_1_19:6476783-6477092:-|nuORF	ENST00000592543.5_1_19:6476783-6477092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8120727539062	2	522.811648	1043.60874	0.086162	4.5047E-05	-0.52775	-0.00027591	-0.44159	-0.00023087	522.8114123142486	11.573	0.13908	11.573	11.514	11.653	0					10	5	2	0	0	0	0.61124	1	2254	2254		15.642	0	1	410700			9856	768	6094	6123	10017	10017					0.08868236600164892
ERSEKNEIK	9	Unmodified	_ERSEKNEIK_					0	0	0			REV__nc|ENSG00000013725|P30203-6|CD6	REV__nc|ENSG00000013725|P30203-6|CD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.2022705078125	3	378.20341	1131.5884	-0.43852	-0.00016585	-2.4197	-0.00091515	-2.8583	-0.001081	378.2023434662129	17.25	0.11732	17.25	17.192	17.31	0					4	2	2	0	0	0	0.16806	1	4956	4956		65.465	3.358	1	208290	+		9857	12918	6095	6124	10018	10018					0.02787021149697466
ERSLAHHT	8	Unmodified	_ERSLAHHT_					0	0	0			REV__ENST00000484932.5_1_6:35248907-35254026:+|nuORF	REV__ENST00000484932.5_1_6:35248907-35254026:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7427673339844	2	475.743765	949.472977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.612	1	14.612	14.112	15.112	0								0	0	0	1.7419	1	3599	3599		38.806	8.3025	1		+		9858	19646	6096	6125	10019	10019					-0.003780381906267394
ERSPHAPRGP	10	Unmodified	_ERSPHAPRGP_					0	0	0			REV__ENST00000291539.10_1_21:44152027-44153480:+|nuORF	REV__ENST00000291539.10_1_21:44152027-44153480:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3065795898438	2	552.288871	1102.56319	1.8177	0.0010039	-3.1118	-0.0017186	-1.2941	-0.0007147	552.2864579415406	17.081	0.11936	17.081	17.022	17.141	0					4	2	2	0	0	0	0.52275	1	4852	4852		42.864	0.52619	1	39528	+		9859	18160	6097	6126	10020	10020					0.01601011137813657
ERSVEIPKRE	10	Unmodified	_ERSVEIPKRE_					0	0	0			REV__nc|ENSG00000120798|P13056-2|NR2C1	REV__nc|ENSG00000120798|P13056-2|NR2C1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	621.8435668945312	2	621.843676	1241.6728	0.33662	0.00020932	-0.28693	-0.00017842	0.049693	3.0901E-05	621.8435924802667	26.63	0.4916	26.63	26.314	26.805	0					31	11	4	0	0	0	0.56063	1	9216	9216		38.754	2.436	1	404550	+		9860	14296	6098	6127	10021	10021					0.06162971966477926
ERSYPEYF	8	Unmodified	_ERSYPEYF_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3262939453125	2	545.745639	1089.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.176	1	11.176	10.676	11.676	0								0	0	0	1.7419	1	2232	2232		30.504	5.0535	1		+		9861	12696	6099	6128	10022	10022					-0.06443413207443882
ERTITIEI	8	Unmodified	_ERTITIEI_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;MSL3|p.P440Qfs*22|1|0.32|ENSG00000005302|chrX:11772188-11772188|C/-|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3;ENST00000494268.1_1_X:11778342-11782058:+|nuORF	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7798156738281	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.051	1	26.051	25.551	26.551	0								0	0	0	1.7419	1	8143	8143		35.618	0.46626	1				9862	959	6100	6129	10023	10023					0.056580367233777906
ERTSRPLRI	9	Unmodified	_ERTSRPLRI_					0	0	0			REV__ENST00000542454.2_2_14:96671156-96704150:+|nuORF	REV__ENST00000542454.2_2_14:96671156-96704150:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.33740234375	2	564.335821	1126.65709	1.8914	0.0010674	0.90334	0.00050979	2.7948	0.0015772	564.336248098805	33.997	2.6793	33.997	33.829	36.509	0					274	73	6	0	0	0	0.30951	1	13686	13686		49.442	7.0454	1	34739000	+		9863	20144	6101	6130	10024	10024					0.09882730240087767
ERTVDSLR	8	Unmodified	_ERTVDSLR_					0	0	0			REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.26409912109375	2	488.26453	974.514508	-0.70732	-0.00034536	-0.55366	-0.00027033	-1.261	-0.00061569	488.2642551690028	17.369	0.15036	17.369	17.285	17.435	0					5	3	2	0	0	0	0.35045	1	5148	5148		76.774	5.4784	1	487660	+		9864	16996	6102	6131	10025	10025					0.02623097778052852
ERVIKRTE	8	Unmodified	_ERVIKRTE_					0	0	0			REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF	REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.806640625	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.055	1	30.055	29.555	30.555	0								0	0	0	1.7419	1	11195	11195		44.117	5.3107	1		+		9865	14777	6103	6132	10026	10026					0.07947950083121214
ERVLIVEGF	9	Unmodified	_ERVLIVEGF_					0	0	0			REV__AKT3|p.K161E|1|0.5|ENSG00000117020|chr1:243637691-243637691|T/C|missense_variant	REV__AKT3|p.K161E|1|0.5|ENSG00000117020|chr1:243637691-243637691|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3065185546875	2	531.303124	1060.5917	0.98445	0.00052304	3.3561	0.0017831	4.3406	0.0023061	531.3049056339039	37.13	0.11351	37.13	37.065	37.178	0					5	3	2	0	0	0	0.55379	1	14500	14500		26.693	1.2427	1	86260	+		9866	12133	6104	6133	10027	10027					0.06382315994392229
ERVLRDLR	8	Unmodified	_ERVLRDLR_					0	0	0		nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;ENST00000583850.5_1_17:7127146-7127844:+|nuORF;ACADVL|p.F461*|1|0.27|ENSG00000072778|chr17:7224016-7224017|TT/-|frameshift_variant	nc|ENSG00000072778|P49748-2|ACADVL	nc|ENSG00000072778|P49748-2|ACADVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.8176879882812	2	528.817264	1055.61998	1.7435	0.000922	-0.56548	-0.00029903	1.178	0.00062296	528.8168945905193	17.259	0.16931	17.259	17.149	17.318	0					8	3	3	0	0	0	0.66095	1	5108	5108		39.253	0	1	453790			9867	1500	6105	6134	10028	10028					0.09439058694306368
ERVPSSRND	9	Unmodified	_ERVPSSRND_					0	0	0		ENST00000471877.5_1_7:149576281-149576879:+|nuORF	ENST00000471877.5_1_7:149576281-149576879:+|nuORF	ENST00000471877.5_1_7:149576281-149576879:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2621459960938	2	530.262519	1058.51048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.005	1	40.005	39.505	40.505	0								0	0	0	0.33029	1	15852	15852		29.17	3.1067	1				9868	9859	6106	6135	10029	10029					-0.016429917156528973
ERWKMKNSHK	10	Unmodified	_ERWKMKNSHK_					0	0	0		ENST00000425011.1_3_X:102840593-102841700:+|nuORF;ENST00000494801.5_1_X:102840495-102841700:+|nuORF	ENST00000425011.1_3_X:102840593-102841700:+|nuORF	ENST00000425011.1_3_X:102840593-102841700:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	672.3518676757812	2	672.353688	1342.69282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.517	1	23.517	23.017	24.017	0								0	0	0	0.30854	1	8113	8113		49.536	14.384	1				9869	9427	6107	6136	10030	10030					0.03518444425412781
ERYMKELE	8	Unmodified	_ERYMKELE_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A;HMG20A|p.K160N|1|0.29|ENSG00000140382|chr15:77470939-77470939|G/T|missense_variant	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2714233398438	2	549.268424	1096.5223	3.7808	0.0020767	1.504	0.00082609	5.2848	0.0029028	549.2696824058901	18.344	0.36269	18.344	18.092	18.454	0					22	7	5	0	0	0	0.74405	1	5489	5489		27.882	0	1	767060			9870	4381	6108	6137	10031	10031					-0.022105110167103703
ESAAPLFPP	9	Unmodified	_ESAAPLFPP_					0	0	0			REV__nc|ENSG00000176058|Q4KMQ1-2|TPRN	REV__nc|ENSG00000176058|Q4KMQ1-2|TPRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7453918457031	2	464.742368	927.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.335	1	21.335	20.835	21.835	0								0	0	0	0.27166	1	6929	6929		40.573	0	1		+		9871	16639	6109	6138	10032	10032					0.00354693631857117
ESAGPPPFVI	10	Unmodified	_ESAGPPPFVI_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.26922607421875	2	507.26875	1012.52295	2.9387	0.0014907	-1.7644	-0.00089504	1.1743	0.00059569	507.2678592654233	48.657	0.10965	48.657	48.622	48.732	0					8	5	2	0	0	0	0.58896	1	19326	19326		35.618	10.168	1	59538	+		9872	13580	6110	6139	10033	10033					0.017186516946708252
ESAKPGTKSGF	11	Unmodified	_ESAKPGTKSGF_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7874145507812	2	554.785296	1107.55604	3.5834	0.001988	0.98073	0.0005441	4.5642	0.0025321	554.7855372897814	35.064	1.3623	35.064	34.651	36.013	0					76	27	4	0	0	0	0.25663	1	13777	13777		67.494	1.0644	1	915570			9873	11866	6111	6140	10034	10034					0.006562337467130419
ESAKVTLDA	9	Unmodified	_ESAKVTLDA_					0	0	0			REV__MYBPC2|p.P573Lfs*7|1|0.26|ENSG00000086967|chr19:50451968-50451968|C/-|frameshift_variant	REV__MYBPC2|p.P573Lfs*7|1|0.26|ENSG00000086967|chr19:50451968-50451968|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.24810791015625	2	467.248015	932.481476	-0.70616	-0.00032995	0.42771	0.00019985	-0.27845	-0.00013011	467.24833237476946	25.958	0.18782	25.958	25.905	26.093	0					7	4	2	0	0	0	0.53083	1	8325	8325		29.15	0.89528	1	65036	+		9874	13374	6112	6141	10035	10035					0.012534709353417384
ESANASHI	8	Unmodified	_ESANASHI_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.6955871582031	2	414.695949	827.377345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.098	1	18.098	17.598	18.598	0								0	0	0	1.7419	1	4454	4454		40.573	0	1		+		9875	13708	6113	6142	10036	10036					-0.04324811101537307
ESAQVCKSH	9	Carbamidomethyl (C)	_ESAQVC(Carbamidomethyl (C))KSH_	ESAQVC(1)KSH		ESAQVC(51)KSH		0	1	0			REV__ENST00000338785.7_1_21:38886299-38886440:+|nuORF	REV__ENST00000338785.7_1_21:38886299-38886440:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.240234375	2	523.240198	1044.46584	0.088267	4.6185E-05	-0.057168	-2.9913E-05	0.031099	1.6272E-05	523.2400769606836	11.862	1.3685	11.862	11.677	13.046	0					127	44	5	0	0	0	0.28897	1	2622	2622		51.193	14.746	1	26077000	+		9876	18437	6114	6143	10037	10037	654				-0.0546113885336581
ESARQLQL	8	Unmodified	_ESARQLQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7613830566406	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.619	1	26.619	26.119	27.119	0								0	0	0	1.7419	1	9426	9426		68.787	2.3575	1				9877	6707	6115	6144	10038	10038					0.03467999266388233
ESARQLQL	8	Unmodified	_ESARQLQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.76214599609375	2	472.761623	943.508694	2.4169	0.0011426	-2.1813	-0.0010313	0.2356	0.00011138	472.7609445733166	26.578	0.21918	26.578	26.469	26.688	0					15	4	5	0	0	0	0.35045	1	9420	9420		76.774	10.345	1	790060			9878	6707	6115	6144	10039	10039					0.03467999266388233
ESCEYSKA	8	Unmodified	_ESCEYSKA_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.6892395019531	2	458.689475	915.364398	-0.65355	-0.00029978	0.32641	0.00014972	-0.32714	-0.00015005	458.68974475001113	17.456	0.48098	17.456	17.374	17.855	0					15	12	3	0	0	0	0.72381	1	4934	4934		30.504	0.6621	1	843770	+		9879	17405	6116	6145	10040	10040					-0.09667010275927623
ESCFDTSK	8	Unmodified	_ESCFDTSK_					0	0	0		EXTL1|p.P388Qfs*35|1|0.43|ENSG00000158008|chr1:26031188-26031188|C/-|frameshift_variant;ENSG00000158008|ENST00000374280|EXTL1	EXTL1|p.P388Qfs*35|1|0.43|ENSG00000158008|chr1:26031188-26031188|C/-|frameshift_variant	EXTL1|p.P388Qfs*35|1|0.43|ENSG00000158008|chr1:26031188-26031188|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.68951416015625	2	458.689475	915.364398	-1.1285	-0.00051765	0.69612	0.0003193	-0.43243	-0.00019835	458.68992156389675	17.203	0.11946	17.203	17.127	17.247	0					6	3	2	0	0	0	0.66372	1	4259	4259		38.806	12.01	1	202600			9880	5242	6117	6146	10041	10041					-0.09667010275927623
ESCGLLEVF	9	Unmodified	_ESCGLLEVF_					0	0	0			REV__RAD50|p.R1279C|1|0.9|ENSG00000113522|chr5:132642260-132642260|C/T|missense_variant	REV__RAD50|p.R1279C|1|0.9|ENSG00000113522|chr5:132642260-132642260|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.73797607421875	2	498.738968	995.463383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.67	1	11.67	11.17	12.17	0								0	0	0	0.39802	1	2199	2199		11.511	1.2458	1		+		9881	21439	6118	6147	10042	10042					-0.034529873110273
ESCLAKHA	8	Carbamidomethyl (C)	_ESC(Carbamidomethyl (C))LAKHA_	ESC(1)LAKHA		ESC(42)LAKHA		0	1	0			REV__CON__P00711	REV__CON__P00711	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.72210693359375	2	458.221277	914.428001	0.72233	0.00033099	-1.7914	-0.00082084	-1.069	-0.00048986	458.22072802297106	20.595	0.36963	20.595	20.412	20.781	0					22	7	5	0	0	0	0.64096	1	6721	6721		42.474	8.9589	1	1107800	+	+	9882	12584	6119	6148	10043	10043	497				-0.03263605048164209
ESCQFRKKQ	9	Unmodified	_ESCQFRKKQ_					0	0	0			REV__ENSG00000204947|ENST00000378061|ZNF425	REV__ENSG00000204947|ENST00000378061|ZNF425	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	577.2924194335938	2	577.292765	1152.57098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.842	1	13.842	13.342	14.342	0								0	0	0	0.27025	1	2834	2834		40.778	8.8233	1		+		9883	17505	6120	6149	10044	10044					0.0007940234306715865
ESDDLPLFQL	10	Unmodified	_ESDDLPLFQL_					0	0	0			REV__MPHOSPH9|p.T1047Nfs*4|1|0.3|ENSG00000051825|chr12:123161377-123161378|-/T|frameshift_variant	REV__MPHOSPH9|p.T1047Nfs*4|1|0.3|ENSG00000051825|chr12:123161377-123161378|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7945556640625	2	588.792786	1175.57102	3.1861	0.001876	-0.81617	-0.00048055	2.37	0.0013954	588.7924684173404	41.436	0.62207	41.436	41.256	41.878	0					63	16	6	0	0	0	0.52275	1	16595	16595		42.864	3.6114	1	16460000	+		9884	13036	6121	6150	10045	10045					-0.009743191759525871
ESDFNNGIN	9	Unmodified	_ESDFNNGIN_					0	0	0			REV__CBLN1|p.P107Rfs*13|1|0.31|ENSG00000102924|chr16:49280987-49280987|G/-|frameshift_variant	REV__CBLN1|p.P107Rfs*13|1|0.31|ENSG00000102924|chr16:49280987-49280987|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2140197753906	2	505.214703	1008.41485	-0.050022	-2.5272E-05	-1.2406	-0.00062676	-1.2906	-0.00065203	505.21414662548364	39.571	0.1831	39.571	39.499	39.682	0					10	7	2	0	0	0	0.41113	1	15062	15062		40.778	1.972	1	107970	+		9885	12341	6122	6151	10046	10046					-0.08901764626557451
ESDPALKQL	9	Unmodified	_ESDPALKQL_					0	0	0			REV__ARHGAP5|p.R538S|1|0.27|ENSG00000100852|chr14:32092283-32092283|G/T|missense_variant	REV__ARHGAP5|p.R538S|1|0.27|ENSG00000100852|chr14:32092283-32092283|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.76971435546875	2	500.769114	999.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.555	1	32.555	32.055	33.055	0								0	0	0	0.099216	1	11333	11333		71.877	5.4482	1		+		9886	12207	6123	6152	10047	10047					0.0238944634369318
ESDRIRLL	8	Unmodified	_ESDRIRLL_					0	0	0		ENST00000475815.5_1_2:36783274-36783475:-|nuORF	ENST00000475815.5_1_2:36783274-36783475:-|nuORF	ENST00000475815.5_1_2:36783274-36783475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2903137207031	2	501.290548	1000.56654	1.1184	0.00056066	-1.2832	-0.00064324	-0.16473	-8.2577E-05	501.28948985675544	47.696	0.2613	47.696	47.576	47.837	0					23	14	2	0	0	0	0.66095	1	19014	19014		37.159	8.9048	1	58892			9887	9901	6124	6153	10048	10048					0.06628261191792717
ESEAVGLQR	9	Unmodified	_ESEAVGLQR_					0	0	0			REV__nc|ENSG00000011451|O95785-4|WIZ	REV__nc|ENSG00000011451|O95785-4|WIZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7583923339844	2	494.756538	987.498523	3.4297	0.0016969	0.78516	0.00038846	4.2148	0.0020853	494.75694921113325	29.421	0.41775	29.421	29.19	29.608	0					33	16	3	0	0	0	0.45358	1	9557	9557		37.159	2.0071	1	157870	+		9888	12908	6125	6154	10049	10049					0.004273915411545204
ESEIQRLSE	9	Unmodified	_ESEIQRLSE_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7725219726562	2	545.772385	1089.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.788	1	17.788	17.288	18.288	0								0	0	0	0.17378	1	5345	5345		54.776	12.38	1				9889	2830	6126	6155	10050	10050					-0.010966604955683579
ESEKIESQL	9	Unmodified	_ESEKIESQL_					0	0	0			REV__tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1	REV__tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7696533203125	2	531.769311	1061.52407	0.12141	6.456E-05	0.99714	0.00053025	1.1185	0.00059481	531.7697977520902	28.444	0.20642	28.444	28.319	28.526	0					10	5	2	0	0	0	0.15163	1	10040	10040		67.494	5.8024	1	569770	+		9890	21665	6127	6156	10051	10051					-0.004231787270782661
ESELIKEF	8	Unmodified	_ESELIKEF_					0	0	0			REV__PSD2|p.A139T|2|0.18|ENSG00000146005|chr5:139813352-139813352|G/A|missense_variant	REV__PSD2|p.A139T|2|0.18|ENSG00000146005|chr5:139813352-139813352|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7584228515625	2	497.758215	993.501877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.626	1	27.626	27.126	28.126	0								0	0	0	1.7419	1	8536	8536		42.396	1.8235	1		+		9891	15299	6128	6157	10052	10052					0.00486641595148285
ESERRAKE	8	Unmodified	_ESERRAKE_					0	0	0		nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-4|NF2	nc|ENSG00000186575|P35240-4|NF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.75994873046875	2	502.759612	1003.50467	0.72396	0.00036398	-0.52019	-0.00026153	0.20377	0.00010245	502.75944401147075	18.437	0.231	18.437	18.254	18.485	0					10	5	3	0	0	0	0.63077	1	5385	5385		44.117	1.6423	1	975330			9892	7149	6129	6158	10053	10053					0.003059097726691107
ESEYVESI	8	Unmodified	_ESEYVESI_					0	0	0			REV__MAP1LC3B2|p.P94A|1|0.07|ENSG00000258102|chr12:116576222-116576222|C/G|missense_variant	REV__MAP1LC3B2|p.P94A|1|0.07|ENSG00000258102|chr12:116576222-116576222|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2164001464844	2	478.21638	954.418207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.079	1	20.079	19.579	20.579	0								0	0	0	1.7419	1	5548	5548		25.45	3.7478	1		+		9893	15096	6130	6159	10054	10054					-0.06082514572551645
ESFCLKLNQL	10	Unmodified	_ESFCLKLNQL_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	398.8777160644531	3	398.877758	1193.61144	-0.84479	-0.00033697	0.91819	0.00036625	0.073403	2.9279E-05	398.87798809563316	26.645	0.113	26.645	26.594	26.707	0					8	4	2	0	0	0	0.65051	1	8399	8399		28.081	1.3886	1	79438	+		9894	17307	6131	6160	10055	10055					0.022383239428108936
ESFSKVVIH	9	Unmodified	_ESFSKVVIH_					0	0	0			REV__MAP9|p.D123H|1|0.38|ENSG00000164114|chr4:155373250-155373250|C/G|missense_variant	REV__MAP9|p.D123H|1|0.38|ENSG00000164114|chr4:155373250-155373250|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2882690429688	2	523.287474	1044.5604	0.47471	0.00024841	1.1307	0.00059168	1.6054	0.00084008	523.7894324895794	36.735	0.46915	36.735	36.428	36.897	0					11	9	2	0	0	0	0.47038	1	14339	14339		35.618	2.8059	1	100840	+		9895	20862	6132	6161	10056	10056					0.039897429602888224
ESGALGIVVP	10	Unmodified	_ESGALGIVVP_					0	0	0		ENST00000314289.12_2_4:2515676-2516066:+|nuORF	ENST00000314289.12_2_4:2515676-2516066:+|nuORF	ENST00000314289.12_2_4:2515676-2516066:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.77001953125	2	471.26875	940.522947	-0.41912	-0.00019752	0.32143	0.00015148	-0.097684	-4.6035E-05	471.2687232860157	35.031	0.86126	35.031	34.58	35.442	0					47	39	2	0	0	0	0.57532	1	11394	11394		37.159	8.0096	1	84201			9896	8574	6133	6162	10057	10057					0.0503065169467618
ESGATFVWPE	10	Unmodified	_ESGATFVWPE_					0	0	0			REV__PTK7|p.R331W|1|0.19|ENSG00000112655|chr6:43132450-43132450|C/T|missense_variant	REV__PTK7|p.R331W|1|0.19|ENSG00000112655|chr6:43132450-43132450|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7576293945312	2	561.758746	1121.50294	-0.93196	-0.00052354	-1.808	-0.0010157	-2.74	-0.0015392	561.7576460134605	34.782	0.27892	34.782	34.673	34.952	0					15	10	2	0	0	0	0.46215	1	12333	12333		49.442	5.0644	1	143390	+		9897	21424	6134	6163	10058	10058					-0.052951440359720436
ESGFSKSI	8	Unmodified	_ESGFSKSI_					0	0	0		CELSR2-KIAA1324|1|fusion;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.7163391113281	2	427.71635	853.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.951	1	24.951	24.451	25.451	0								0	0	0	1.7419	1	7860	7860		71.296	2.5089	1				9898	469	6135	6164	10059	10059					-0.014424697818981258
ESGHIARIP	9	Unmodified	_ESGHIARIP_					0	0	0		ENSG00000198889|ENST00000371126|DCAF12L1	ENSG00000198889|ENST00000371126|DCAF12L1	ENSG00000198889|ENST00000371126|DCAF12L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.29010009765625	2	490.269616	978.524678	-2.7898	-0.0013677	0.79167	0.00038813	-1.9981	-0.0009796	490.26999912542044	25.902	0.23158	25.902	25.767	25.998	0					7	3	3	0	0	0	0.45358	1	8254	8254		37.159	0	1	708620			9899	7634	6136	6165	10060	10060					0.03455705503279205
ESGQTWPWR	9	Unmodified	_ESGQTWPWR_					0	0	0		nc|ENSG00000162729|Q969P0-2|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.772216796875	2	573.76998	1145.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.683	1	28.683	28.183	29.183	0								0	0	0	0.3119	1	10538	10538		32.812	3.6424	1				9900	11612	6137	6166	10061	10061					-0.041534998476890905
ESGSRAAGPVS	11	Unmodified	_ESGSRAAGPVS_					0	0	0		NEIL1|p.Q86Sfs*67|1|0.18|ENSG00000140398|chr15:75349157-75349157|T/-|frameshift_variant	NEIL1|p.Q86Sfs*67|1|0.18|ENSG00000140398|chr15:75349157-75349157|T/-|frameshift_variant	NEIL1|p.Q86Sfs*67|1|0.18|ENSG00000140398|chr15:75349157-75349157|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.25360107421875	2	509.25162	1016.48869	-0.10601	-5.3987E-05	4.3663	0.0022235	4.2603	0.0021695	509.25367814851467	27.286	0.071701	27.286	27.226	27.298	0					5	3	2	0	0	0	0.46959	1	8389	8389		46.457	0.48454	1	63078			9901	11851	6138	6167	10062	10062					-0.018897964642405896
ESGVLVLRE	9	Unmodified	_ESGVLVLRE_					0	0	0		ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR	ENSG00000063438|ENST00000684583|AHRR	ENSG00000063438|ENST00000684583|AHRR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2852783203125	2	501.284931	1000.55531	0.14715	7.3764E-05	-0.46448	-0.00023284	-0.31733	-0.00015907	501.2846756493737	34.016	0.36117	34.016	33.848	34.209	0					28	10	4	0	0	0	0.21263	1	11970	11970		60.118	1.8883	1	695490			9902	1340	6139	6168	10063	10063					0.055054390976465584
ESHCGLATFVI	11	Unmodified	_ESHCGLATFVI_					0	0	0		TSPAN3|p.R80H|1|0.46|ENSG00000140391|chr15:77056080-77056080|C/T|missense_variant	TSPAN3|p.R80H|1|0.46|ENSG00000140391|chr15:77056080-77056080|C/T|missense_variant	TSPAN3|p.R80H|1|0.46|ENSG00000140391|chr15:77056080-77056080|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.86279296875	3	392.862108	1175.56449	0.44927	0.0001765	0.33863	0.00013304	0.7879	0.00030954	392.8618438270253	16.41	0.36727	16.41	16.283	16.65	0					14	7	3	0	0	0	0.55715	1	4543	4543		40.058	2.55	1	597770			9903	23073	6140	6169	10064	10064					-0.016265356083067672
ESHEEWWPGL	10	Unmodified	_ESHEEWWPGL_					0	0	0			REV__ENST00000574212.1_1_16:15826501-15826636:+|nuORF	REV__ENST00000574212.1_1_16:15826501-15826636:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	635.2830810546875	2	635.280377	1268.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.149	1	36.149	35.649	36.649	0								0	0	0	0.4201	1	13611	13611		20.947	3.4789	1		+		9904	20402	6141	6170	10065	10065					-0.07732954258676727
ESHELAALL	9	Unmodified	_ESHELAALL_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.76220703125	2	491.763832	981.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.519	1	37.519	37.019	38.019	0								0	0	0	0.32356	1	14229	14229		30.504	3.7075	1		+		9905	21237	6142	6171	10066	10066					0.02161463689287757
ESHNNKKR	8	Unmodified	_ESHNNKKR_					0	0	0			REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.76910400390625	2	506.767771	1011.52099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.364	1	17.364	16.864	17.864	0								0	0	0	1.7419	1	4995	4995		45.952	1.5748	1		+		9906	17346	6143	6172	10067	10067					0.015690357294261048
ESHQNGILK	9	Unmodified	_ESHQNGILK_					0	0	0		nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.29|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;SDK2|p.P1324Lfs*69|1|0.1|ENSG00000069188|chr17:73391466-73391466|G/-|frameshift_variant;SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant;SDK2|p.R1007Afs*3|1|0.43|ENSG00000069188|chr17:73399242-73399242|G/-|frameshift_variant;SDK2|p.S1083Vfs*66|2|0.32|ENSG00000069188|chr17:73398143-73398143|G/-|frameshift_variant	nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-4|SDK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2725219726562	2	513.272355	1024.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.466	1	17.466	16.966	17.966	0								0	0	0	0.30504	1	5044	5044		34.173	1.3601	1				9907	11436	6144	6173	10068	10068					0.01887384295105221
ESHSGMSGARP	11	Unmodified	_ESHSGMSGARP_					0	0	0		ENST00000506153.5_1_16:2889659-2891196:-|nuORF;ENST00000476276.5_1_16:2889659-2890331:-|nuORF	ENST00000506153.5_1_16:2889659-2891196:-|nuORF	ENST00000506153.5_1_16:2889659-2891196:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.25146484375	2	558.248554	1114.48256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.547	1	43.547	43.047	44.047	0								0	0	0	0.44027	1	17022	17022		28.081	0.19925	1				9908	9908	6145	6174	10069	10069					-0.07010637967391631
ESHWKTVL	8	Unmodified	_ESHWKTVL_					0	0	0		ENST00000360772.7_2_3:123339058-123356929:-|nuORF;ENST00000418370.6_1_3:123339058-123339328:-|nuORF	ENST00000360772.7_2_3:123339058-123356929:-|nuORF	ENST00000360772.7_2_3:123339058-123356929:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.267822265625	2	500.266542	998.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.83	1	13.83	13.33	14.33	0								0	0	0	1.7419	1	3456	3456		33.516	0.70317	1				9909	8868	6146	6175	10070	10070					0.01921187271761937
ESIEAGKSKL	10	Unmodified	_ESIEAGKSKL_					0	0	0			REV__ENST00000531186.5_1_11:32605433-32610279:+|nuORF	REV__ENST00000531186.5_1_11:32605433-32610279:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	354.53277587890625	3	354.532756	1060.57644	-0.86561	-0.00030689	0.85861	0.0003044	-0.0070073	-2.4843E-06	354.53299295090613	20.767	0.17723	20.767	20.692	20.869	0					15	6	3	0	0	0	0.536	1	5859	5859		41.427	5.8083	1	260210	+		9910	12783	6147	6176	10071	10071					0.0485740440653899
ESIEAGKSKL	10	Unmodified	_ESIEAGKSKL_					0	0	0			REV__ENST00000531186.5_1_11:32605433-32610279:+|nuORF	REV__ENST00000531186.5_1_11:32605433-32610279:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2955322265625	2	531.295496	1060.57644	1.6862	0.0008959	-1.3322	-0.0007078	0.35404	0.0001881	531.2948449201494	20.97	0.61214	20.97	20.726	21.338	0					13	10	2	0	0	0	0.071575	1	6767	6767		90.601	0	1	4847200	+		9911	12783	6147	6176	10072	10072					0.0485740440653899
ESIFFQVD	8	Unmodified	_ESIFFQVD_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7383117675781	2	492.737283	983.460012	-0.072207	-3.5579E-05	2.8326	0.0013957	2.7604	0.0013601	492.73837626561857	17.094	0.10831	17.094	17.033	17.142	0					5	3	2	0	0	0	0.79567	1	4007	4007		17.365	2.7009	1	87461	+		9912	12745	6148	6177	10073	10073					-0.03237914093381278
ESIITAKV	8	Unmodified	_ESIITAKV_					0	0	0			REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7578430175781	2	430.758018	859.501483	0.96742	0.00041672	-1.663	-0.00071636	-0.6956	-0.00029963	430.7573936233964	29.349	0.40997	29.349	29.19	29.6	0					26	8	4	0	0	0	0.39125	1	10726	10726		71.877	2.2498	1	4203800	+		9913	14471	6149	6178	10074	10074					0.06611266665959192
ESIKERDY	8	Unmodified	_ESIKERDY_					0	0	0			REV__ZNF461|p.S208Tfs*62|1|0.18|ENSG00000197808|chr19:36639722-36639723|-/AAATGCAATGAGTG|frameshift_variant	REV__ZNF461|p.S208Tfs*62|1|0.18|ENSG00000197808|chr19:36639722-36639723|-/AAATGCAATGAGTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2570190429688	2	520.256371	1038.49819	1.6767	0.00087231	-1.4156	-0.0007365	0.26106	0.00013582	520.2556735427412	31.221	0.17946	31.221	31.126	31.305	0					7	4	2	0	0	0	0.5676	1	11767	11767		53.351	5.3919	1	349530	+		9914	22321	6150	6179	10075	10075					-0.019520281786981286
ESIKVQDSL	9	Unmodified	_ESIKVQDSL_					0	0	0			REV__ENST00000575826.5_1_17:7530037-7530880:-|nuORF	REV__ENST00000575826.5_1_17:7530037-7530880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.1851806640625	3	340.185356	1017.53424	0.22206	7.5543E-05	-0.053199	-1.8098E-05	0.16886	5.7445E-05	340.18531048152954	19.834	0.10307	19.834	19.759	19.862	0					8	3	3	0	0	0	0.26904	1	5198	5198		60.118	6.7668	1	106990	+		9915	15119	6151	6180	10076	10076					0.026174289981327092
ESILKEAQI	9	Unmodified	_ESILKEAQI_					0	0	0		MORC1|p.K745Rfs*6|1|0.31|ENSG00000114487|chr3:108986903-108986903|T/-|frameshift_variant;nc|ENSG00000114487|Q86VD1-2|MORC1;MORC1|p.N978Kfs*2|2|0.38|ENSG00000114487|chr3:108958986-108958987|-/T|frameshift_variant;ENSG00000114487|ENST00000232603|MORC1	MORC1|p.K745Rfs*6|1|0.31|ENSG00000114487|chr3:108986903-108986903|T/-|frameshift_variant	MORC1|p.K745Rfs*6|1|0.31|ENSG00000114487|chr3:108986903-108986903|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.79296875	2	515.792589	1029.57063	1.4384	0.00074189	0.33736	0.00017401	1.7757	0.0009159	515.7924489787642	19.023	0.36221	19.023	18.818	19.18	0					18	7	4	0	0	0	0.14603	1	5958	5958		68.787	0	1	760740			9916	2852	6152	6181	10077	10077					0.057023058948516336
ESILVRNL	8	Unmodified	_ESILVRNL_					0	0	0		ZNF420|p.K361Nfs*214|1|0.5|ENSG00000197050|chr19:37128070-37128070|A/-|frameshift_variant	ZNF420|p.K361Nfs*214|1|0.5|ENSG00000197050|chr19:37128070-37128070|A/-|frameshift_variant	ZNF420|p.K361Nfs*214|1|0.5|ENSG00000197050|chr19:37128070-37128070|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2813415527344	2	472.282192	942.549831	0.5859	0.00027671	-0.83008	-0.00039203	-0.24418	-0.00011532	472.28146576963	35.081	0.2602	35.081	34.998	35.258	0					10	7	2	0	0	0	0.27635	1	13572	13572		90.37	5.4543	1	171780			9917	23153	6153	6182	10078	10078					0.0762576030585933
ESINVFLAH	9	Unmodified	_ESINVFLAH_					0	0	0		ENST00000450253.6_1_4:99801895-99802249:-|nuORF	ENST00000450253.6_1_4:99801895-99802249:-|nuORF	ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2708740234375	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.164	1	25.164	24.664	25.664	0								0	0	0	0.3063	1	7960	7960		34.173	17.699	1				9918	9646	6154	6183	10079	10079					0.015971699261854155
ESIRRGGR	8	Unmodified	_ESIRRGGR_					0	0	0		ENST00000514199.1_1_5:139944539-139945076:+|nuORF	ENST00000514199.1_1_5:139944539-139945076:+|nuORF	ENST00000514199.1_1_5:139944539-139945076:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.76593017578125	2	465.765032	929.515511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.337	1	24.337	23.837	24.837	0								0	0	0	1.7419	1	7169	7169		53.351	4.1407	1				9919	10252	6155	6184	10080	10080					0.04793356937614135
ESITVVKL	8	Unmodified	_ESITVVKL_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2;ENST00000561228.1_1_14:102843052-102891354:+|nuORF	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.77294921875	2	444.773668	887.532783	-0.37911	-0.00016862	0.21857	9.7213E-05	-0.16054	-7.1404E-05	444.77370144815455	38.209	0.18589	38.209	38.147	38.333	0					11	7	2	0	0	0	0.53424	1	14504	14504		56.721	0	1	166690			9920	7391	6156	6185	10081	10081					0.08451839700046548
ESIVRGRND	9	Unmodified	_ESIVRGRND_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2747802734375	2	523.272887	1044.53122	3.4156	0.0017873	-0.22117	-0.00011573	3.1945	0.0016716	523.2727492537676	36.209	1.5536	36.209	35.996	37.55	0					91	31	7	0	0	0	0.24095	1	13988	13988		56.721	0	1	56175000	+		9921	17488	6157	6186	10082	10082					0.010735986639929251
ESKEQRCL	8	Unmodified	_ESKEQRCL_					0	0	0		ENST00000377102.5_1_13:80912972-80913233:-|nuORF	ENST00000377102.5_1_13:80912972-80913233:-|nuORF	ENST00000377102.5_1_13:80912972-80913233:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.744873046875	2	496.745116	991.475679	0.71891	0.00035711	-1.2419	-0.00061692	-0.52301	-0.0002598	496.74448717271605	16.456	0.18432	16.456	16.362	16.546	0					7	4	2	0	0	0	0.41952	1	4474	4474		68.485	5.1784	1	734500			9922	9048	6158	6187	10083	10083					-0.020399508479727047
ESKESAVI	8	Unmodified	_ESKESAVI_					0	0	0			REV__tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	REV__tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.7287902832031	2	431.729458	861.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.116	1	32.116	31.616	32.616	0								0	0	0	1.7419	1	10363	10363		57.811	2.3071	1		+		9923	22225	6159	6188	10084	10084					0.008097993895830768
ESKLHYLTK	9	Unmodified	_ESKLHYLTK_					0	0	0			REV__MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant	REV__MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.54388427734375	3	373.544996	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.692	1	42.692	42.192	43.192	0								0	0	0	0.28666	1	16746	16746		37.812	6.2817	1		+		9924	14035	6160	6189	10085	10085					0.05905701023061738
ESKQDKAAS	9	Unmodified	_ESKQDKAAS_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-5|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.26800537109375	2	482.240721	962.466889	0.69045	0.00033297	-1.3113	-0.00063234	-0.6208	-0.00029937	482.24016496675307	17.492	0.56974	17.492	17.435	18.005	0					24	11	3	0	0	0	0.19605	1	5264	5264		62.107	3.3255	1	2599500			9925	4205	6161	6190	10086	10086					-0.01584601212812231
ESKQSLNK	8	Unmodified	_ESKQSLNK_					0	0	0		MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant;nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant	MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2530822753906	2	467.253631	932.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.535	1	13.535	13.035	14.035	0								0	0	0	1.7419	1	3164	3164		66.429	0	1				9926	2702	6162	6191	10087	10087					0.023762930294765283
ESKREVAL	8	Unmodified	_ESKREVAL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2639465332031	2	466.263999	930.513445	0.44005	0.00020518	-1.1962	-0.00055776	-0.75618	-0.00035258	466.26369929976767	14.943	0.13075	14.943	14.863	14.994	0					6	3	2	0	0	0	0.32815	1	3763	3763		79.451	10.664	1	453610			9927	4825	6163	6192	10088	10088					0.04540883409140406
ESKREVAL	8	Unmodified	_ESKREVAL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2638854980469	2	466.263999	930.513445	-0.135	-6.2946E-05	0.051916	2.4207E-05	-0.083084	-3.8739E-05	466.2639907834797	14.933	0.16486	14.933	14.846	15.011	0					7	3	3	0	0	0	0.29286	1	3978	3978		84.916	2.675	1	107450			9928	4825	6163	6192	10089	10089					0.04540883409140406
ESKRIVSGAA	10	Unmodified	_ESKRIVSGAA_					0	0	0			REV__nc|ENSG00000167595|Q2NL68|PROSER3	REV__nc|ENSG00000167595|Q2NL68|PROSER3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.288330078125	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.961	1	19.961	19.461	20.461	0								0	0	0	0.362	1	5498	5498		29.17	11.702	1		+		9929	16198	6164	6193	10090	10090					0.05383957329195255
ESKVQSFLASL	11	Unmodified	_ESKVQSFLASL_					0	0	0		FAM114A1|p.N333Mfs*3|1|0.32|ENSG00000197712|chr4:38922817-38922817|A/-|frameshift_variant;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	FAM114A1|p.N333Mfs*3|1|0.32|ENSG00000197712|chr4:38922817-38922817|A/-|frameshift_variant	FAM114A1|p.N333Mfs*3|1|0.32|ENSG00000197712|chr4:38922817-38922817|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.5556335449219	3	403.555561	1207.64485	0.41275	0.00016657	-0.22421	-9.048E-05	0.18855	7.609E-05	403.55538455771216	33.204	0.21925	33.204	33.124	33.344	0					12	5	3	0	0	0	0.74306	1	12722	12722		21.032	2.5012	1	179630			9930	7488	6165	6194	10091	10091					0.04933648986366279
ESLALECTTP	10	Unmodified	_ESLALECTTP_					0	0	0			REV__ZNF805|p.W109Lfs*51|1|0.25|ENSG00000204524|chr19:57253139-57253140|-/T|frameshift_variant	REV__ZNF805|p.W109Lfs*51|1|0.25|ENSG00000204524|chr19:57253139-57253140|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2504272460938	2	532.25244	1062.49033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.893	1	13.893	13.393	14.393	0								0	0	0	0.4162	1	3486	3486		25.574	2.9944	1		+		9931	17490	6166	6195	10092	10092					-0.03841923490517729
ESLEQVPSF	9	Unmodified	_ESLEQVPSF_					0	0	0			REV__ENSG00000111266|ENST00000298573|DUSP16	REV__ENSG00000111266|ENST00000298573|DUSP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2546997070312	2	518.253297	1034.49204	1.394	0.00072243	0.3254	0.00016864	1.7194	0.00089107	518.2537886278118	18.745	0.08033	18.745	18.685	18.766	0					4	2	2	0	0	0	0.45358	1	4719	4719		37.159	0	1	50791	+		9932	13961	6167	6196	10093	10093					-0.023825464102401384
ESLGKLIAQ	9	Unmodified	_ESLGKLIAQ_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.78173828125	2	479.782025	957.549496	-0.21193	-0.00010168	-1.4911	-0.00071541	-1.703	-0.00081709	479.7813074277505	29.652	0.29974	29.652	29.512	29.812	0					13	7	2	0	0	0	0.048471	1	10601	10601		95.815	5.4453	1	467180	+		9933	16808	6168	6197	10094	10094					0.0690234058599799
ESLIKSGKK	9	Unmodified	_ESLIKSGKK_					0	0	0		ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.30401611328125	2	495.303124	988.591695	2.8319	0.0014027	-0.26501	-0.00013126	2.5669	0.0012714	495.3035443671251	45.211	0.069267	45.211	45.17	45.239	0					5	3	2	0	0	0	0.56424	1	18112	18112		25.574	13.367	1	33625			9934	4930	6169	6198	10095	10095					0.09694315994386216
ESLILKPHA	9	Unmodified	_ESLILKPHA_					0	0	0			REV__ENSG00000164010|ENST00000372517|ERMAP	REV__ENSG00000164010|ENST00000372517|ERMAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53399658203125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.422	1	28.422	27.922	28.922	0								0	0	0	0.37821	1	9162	9162		18.262	0	1		+		9935	15947	6170	6199	10096	10096					0.0781033333993264
ESLKCERLK	9	Unmodified	_ESLKCERLK_					0	0	0		ENST00000478261.5_1_3:55107739-55108230:+|nuORF;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3	ENST00000478261.5_1_3:55107739-55108230:+|nuORF	ENST00000478261.5_1_3:55107739-55108230:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3041381835938	2	553.305341	1104.59613	0.62087	0.00034353	-1.5392	-0.00085163	-0.9183	-0.0005081	553.3036977227099	30.755	0.65639	30.755	30.596	31.253	0					32	15	4	0	0	0	0.30951	1	11119	11119		49.442	6.5773	1	1200500			9936	5218	6171	6200	10097	10097					0.0480145714561786
ESLKKNEI	8	Unmodified	_ESLKKNEI_					0	0	0		ENST00000560252.5_1_15:85191115-85197505:-|nuORF;ENST00000559015.5_1_15:85191580-85197505:-|nuORF;ENST00000559994.5_1_15:85189295-85197510:-|nuORF;ENST00000559126.5_1_15:85186703-85196938:-|nuORF;ENSG00000177082|ENST00000434634|WDR73	ENST00000560252.5_1_15:85191115-85197505:-|nuORF	ENST00000560252.5_1_15:85191115-85197505:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7702331542969	2	480.771657	959.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.525	1	34.525	34.025	35.025	0								0	0	0	1.7419	1	12227	12227		66.429	2.222	1				9937	6643	6172	6201	10098	10098					0.04737750206322744
ESLKMVKK	8	Unmodified	_ESLKMVKK_					0	0	0		ENSG00000176635|ENST00000336726|HORMAD2	ENSG00000176635|ENST00000336726|HORMAD2	ENSG00000176635|ENST00000336726|HORMAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7887268066406	2	481.788795	961.563038	-0.622	-0.00029967	0.13134	6.3279E-05	-0.49065	-0.00023639	481.78890045739996	24.287	0.16744	24.287	24.179	24.347	0					8	3	3	0	0	0	0.66095	1	8371	8371		39.253	2.0937	1	412100			9938	6617	6173	6202	10099	10099					0.08071875093583003
ESLKVALQK	9	Unmodified	_ESLKVALQK_					0	0	0		ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85	ENSG00000130695|ENST00000451429|CEP85	ENSG00000130695|ENST00000451429|CEP85	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.20953369140625	3	339.209725	1014.60735	0.22698	7.6994E-05	-0.53182	-0.0001804	-0.30484	-0.0001034	339.2094626989794	24.164	0.12723	24.164	24.087	24.215	0					10	4	3	0	0	0	0.25761	1	7086	7086		54.722	3.5297	1	206520			9939	3658	6174	6203	10100	10100					0.10062602511425212
ESLKVLNE	8	Unmodified	_ESLKVLNE_					0	0	0		ENSG00000163512|ENST00000479665|AZI2;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;nc|ENSG00000163512|Q9H6S1-4|AZI2;ENST00000463512.5_1_3:28368296-28390095:-|nuORF	ENSG00000163512|ENST00000479665|AZI2	ENSG00000163512|ENST00000479665|AZI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2587585449219	2	466.258382	930.502212	0.44233	0.00020624	3.7875	0.001766	4.2298	0.0019722	466.2609610456555	27.577	0.46706	27.577	27.209	27.676	0					15	11	2	0	0	0	0.53424	1	9665	9665		56.721	0	1	150260			9940	5567	6175	6204	10101	10101					0.034180613149942474
ESLLHRAY	8	Unmodified	_ESLLHRAY_					0	0	0		nc|ENSG00000148343|Q7L4E1-3|MIGA2;ENSG00000148343|ENST00000684074|MIGA2	nc|ENSG00000148343|Q7L4E1-3|MIGA2	nc|ENSG00000148343|Q7L4E1-3|MIGA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7590637207031	2	494.764166	987.513779	-2.4634	-0.0012188	-4.2325	-0.0020941	-6.6959	-0.0033129	494.7618868409806	33.356	0.47531	33.356	33.057	33.533	0					32	14	4	0	0	0	0.63077	1	11688	11688		44.117	1.7207	1	239350			9941	4823	6176	6205	10102	10102					0.019523031289850223
ESLLSRGL	8	Unmodified	_ESLLSRGL_					0	0	0		ENST00000497028.5_1_10:46159273-46167936:-|nuORF	ENST00000497028.5_1_10:46159273-46167936:-|nuORF	ENST00000497028.5_1_10:46159273-46167936:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.75421142578125	2	437.753267	873.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.204	1	14.204	13.704	14.704	0								0	0	0	1.7419	1	2970	2970		57.811	2.3071	1				9942	10122	6177	6206	10103	10103					0.050174983804254225
ESLLWKVLV	9	Unmodified	_ESLLWKVLV_					0	0	0		ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8294677734375	2	543.831517	1085.64848	0.35176	0.0001913	2.0772	0.0011296	2.4289	0.0013209	543.832380603626	18.283	0.52458	18.283	18.198	18.723	0					22	12	3	0	0	0	0.12834	1	5415	5415		56.721	27.571	1	1088500			9943	1207	6178	6207	10104	10104					0.10908363550879585
ESLLWKVLV	9	Unmodified	_ESLLWKVLV_					0	0	0		ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8305053710938	2	543.831517	1085.64848	-1.493	-0.00081192	-0.51804	-0.00028173	-2.011	-0.0010937	543.8313817454681	18.232	0.21689	18.232	18.084	18.301	0					11	5	3	0	0	0	0.14578	1	4723	4723		62.107	19.711	1	166600			9944	1207	6178	6207	10105	10105					0.10908363550879585
ESLNKVKNET	10	Unmodified	_ESLNKVKNET_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.3099975585938	2	581.309135	1160.60372	0.63541	0.00036937	-0.027397	-1.5926E-05	0.60802	0.00035344	581.3091752979736	25.645	0.19422	25.645	25.514	25.708	0					9	6	2	0	0	0	0.56931	1	7741	7741		37.812	0	1	86164	+		9945	12863	6179	6208	10106	10106					0.02983887946879804
ESLPHLLFSP	10	Unmodified	_ESLPHLLFSP_					0	0	0		nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	380.2077941894531	3	380.541363	1138.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.892	1	21.892	21.392	22.392	0								0	0	0	0.36846	1	6428	6428		40.058	0.80534	1				9946	11829	6180	6209	10107	10107					0.03850298648808348
ESLQKTIY	8	Unmodified	_ESLQKTIY_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2660217285156	2	491.266207	980.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.019	1	38.019	37.519	38.519	0								0	0	0	1.7419	1	14912	14912		45.952	1.8352	1				9947	1417	6181	6210	10108	10108					0.02682347832035248
ESLQPGGLP	9	Unmodified	_ESLQPGGLP_					0	0	0			REV__ENST00000519604.5_1_20:61917740-61919008:+|nuORF	REV__ENST00000519604.5_1_20:61917740-61919008:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.23895263671875	2	449.23745	896.460347	0.064727	2.9078E-05	1.7075	0.00076706	1.7722	0.00079614	449.2384359944924	28.915	0.31435	28.915	28.789	29.104	0					18	11	2	0	0	0	0.43426	1	9058	9058		38.806	3.6054	1	139980	+		9948	12193	6182	6211	10109	10109					0.007975056264740488
ESLRVETLI	9	Unmodified	_ESLRVETLI_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.8729553222656	3	353.873001	1058.59717	0.49154	0.00017394	-0.50749	-0.00017959	-0.015956	-5.6464E-06	353.8727701191998	25.911	0.3924	25.911	25.732	26.125	0					11	7	2	0	0	0	0.51817	1	8881	8881		54.776	26.894	1	906440	+		9949	17387	6183	6212	10110	10110					0.07021994786191499
ESLSSDLVALS	11	Unmodified	_ESLSSDLVALS_					0	0	0			REV__nc|ENSG00000116455|Q9BQA1-2|WDR77	REV__nc|ENSG00000116455|Q9BQA1-2|WDR77	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.1963806152344	3	374.195921	1119.56593	0.7943	0.00029722	0.20372	7.6231E-05	0.99802	0.00037345	374.19603588822116	28.424	1.2984	28.424	28.224	29.522	0					59	27	5	0	0	0	0.44025	1	10398	10398		48.602	0.64203	1	11770000	+		9950	14144	6184	6213	10111	10111					0.010933769614211997
ESLTPVATT	9	Unmodified	_ESLTPVATT_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.74212646484375	2	459.742565	917.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.122	1	33.122	32.622	33.622	0								0	0	0	0.2591	1	12558	12558		42.396	5.237	1		+		9951	14209	6185	6214	10112	10112					0.008540685610341825
ESLVRANL	8	Unmodified	_ESLVRANL_					0	0	0			REV__PIK3R1|p.S460Kfs*5|1|0.33|ENSG00000145675|chr5:68293781-68293782|-/A|frameshift_variant	REV__PIK3R1|p.S460Kfs*5|1|0.33|ENSG00000145675|chr5:68293781-68293782|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.25830078125	2	451.258717	900.50288	0.70064	0.00031617	-1.9224	-0.00086752	-1.2218	-0.00055135	451.25779782706985	35.821	0.15201	35.821	35.744	35.896	0					7	4	2	0	0	0	0.6088	1	13922	13922		47.657	1.6851	1	170090	+		9952	15279	6186	6215	10113	10113					0.0486490075469419
ESLVSKLL	8	Unmodified	_ESLVSKLL_					0	0	0			REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|345|3|anti-sense	REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|345|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.77349853515625	2	444.773668	887.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.979	1	37.979	37.479	38.479	0								0	0	0	1.7419	1	12822	12822		71.296	0	1		+		9953	20827	6187	6216	10114	10114					0.08451839700046548
ESMCVKTTI	9	Oxidation (M)	_ESM(Oxidation (M))CVKTTI_		ESM(1)CVKTTI		ESM(74)CVKTTI	0	0	1			REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2421264648438	2	514.24356	1026.47257	-1.6155	-0.00083076	-0.99088	-0.00050955	-2.6064	-0.0013403	514.2430682807371	37.374	0.21267	37.374	37.298	37.511	0					15	10	2	0	0	0	0.12239	1	13373	13373		74.255	17.534	1	106430	+		9954	12710	6188	6217	10115	10115		487			-0.039609620170040216
ESMDEFMSITG	11	Unmodified	_ESMDEFMSITG_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	623.7536010742188	2	623.751946	1245.48934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.498	1	15.498	14.998	15.998	0								0	0	0	0.45674	1	3546	3546		19.104	0.84144	1				9955	5962	6189	6218	10116	10116					-0.1235850592170209
ESMGLKWV	8	Unmodified	_ESMGLKWV_					0	0	0			REV__nc|ENSG00000149639|O94964-1|MTCL2	REV__nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2452392578125	2	475.244221	948.473888	2.319	0.0011021	-0.15757	-7.4885E-05	2.1615	0.0010272	475.24409888069795	24.304	0.31575	24.304	24.147	24.463	0					16	6	4	0	0	0	0.58597	1	8378	8378		51.335	3.4199	1	1285500	+		9956	15431	6190	6219	10117	10117					-0.0024095986592556073
ESMHLLLIGA	10	Unmodified	_ESMHLLLIGA_					0	0	0			REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2991333007812	2	542.296985	1082.57942	2.0428	0.0011078	1.9078	0.0010346	3.9507	0.0021424	542.2979689122284	18.097	0.16801	18.097	17.988	18.156	0					7	3	3	0	0	0	0.40673	1	5510	5510		55.504	9.0474	1	840710	+		9957	13122	6191	6220	10118	10118					0.041429562596931646
ESMTFTLI	8	Unmodified	_ESMTFTLI_					0	0	0		ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2377624511719	2	471.236061	940.45757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.36	1	23.36	22.86	23.86	0								0	0	0	1.7419	1	7117	7117		47.916	5.4411	1				9958	6764	6192	6221	10119	10119					-0.015040858226825549
ESNFIQVK	8	Unmodified	_ESNFIQVK_					0	0	0		ENSG00000135248|ENST00000621392|GARIN1B;nc|ENSG00000135248|Q96KD3|GARIN1B	ENSG00000135248|ENST00000621392|GARIN1B	ENSG00000135248|ENST00000621392|GARIN1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7584533691406	2	482.758549	963.502546	-0.13745	-6.6356E-05	-0.71802	-0.00034663	-0.85547	-0.00041298	482.7583446142753	25.075	0.48049	25.075	24.852	25.333	0					31	11	5	0	0	0	0.43813	1	8482	8482		66.429	3.123	1	685780			9959	3976	6193	6222	10120	10120					0.019334810348709652
ESNGWGFL	8	Unmodified	_ESNGWGFL_					0	0	0			REV__ENST00000420642.1_7:74765936-74789271:+|nuORF	REV__ENST00000420642.1_7:74765936-74789271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.20806884765625	2	455.208692	908.402832	-2.6296	-0.001197	1.5029	0.00068415	-1.1267	-0.00051288	455.2094193925639	33.488	0.16683	33.488	33.441	33.608	0					6	4	2	0	0	0	0.65276	1	11767	11767		40.573	5.3719	1	114440	+		9960	17823	6194	6223	10121	10121					-0.05503336579079132
ESNIALLR	8	Unmodified	_ESNIALLR_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.26629638671875	2	458.266542	914.51853	0.72189	0.00033082	-1.6476	-0.00075503	-0.92569	-0.00042421	458.26599480053017	41.957	0.16884	41.957	41.892	42.061	0					11	7	2	0	0	0	0.46013	1	16491	16491		64.207	2.0999	1	55612	+		9961	21074	6195	6224	10122	10122					0.05785187271771974
ESNIIRHYK	9	Unmodified	_ESNIIRHYK_					0	0	0		ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;nc|ENSG00000188994|O60281-2|ZNF292;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292	ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.3124389648438	2	580.314554	1158.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.942	1	12.942	12.442	13.442	0								0	0	0	0.38667	1	2832	2832		14.865	0.72775	1				9962	7289	6196	6225	10123	10123					0.04159335111830842
ESNIVDHF	8	Unmodified	_ESNIVDHF_					0	0	0			REV__ENST00000535143.1_1_12:65737965-65857099:+|nuORF	REV__ENST00000535143.1_1_12:65737965-65857099:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.72686767578125	2	480.724707	959.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.646	1	37.646	37.146	38.146	0								0	0	0	1.7419	1	14736	14736		60.972	7.6205	1		+		9963	16544	6197	6226	10124	10124					-0.0464796889596073
ESNLSVHM	8	Unmodified	_ESNLSVHM_					0	0	0			REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7144470214844	2	458.713285	915.412016	-0.70885	-0.00032516	2.7258	0.0012504	2.017	0.00092521	458.71482971437325	11.46	0.14585	11.46	11.36	11.506	0					7	4	2	0	0	0	0.77246	1	2358	2358		24.203	0	1	129030	+		9964	19193	6198	6227	10125	10125					-0.04907311285069227
ESNRIDLSL	9	Unmodified	_ESNRIDLSL_					0	0	0			REV__FAM135B|p.A704Cfs*7|1|0.18|ENSG00000147724|chr8:138152365-138152366|-/A|frameshift_variant	REV__FAM135B|p.A704Cfs*7|1|0.18|ENSG00000147724|chr8:138152365-138152366|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7776489257812	2	523.77747	1045.54039	1.7888	0.00093692	-1.8513	-0.00096968	-0.062548	-3.2761E-05	523.7767484711856	32.602	0.48353	32.602	32.401	32.885	0					22	12	2	0	0	0	0.12834	1	12415	12415		72.879	0.63601	1	1509600	+		9965	15363	6199	6228	10126	10126					0.019439472296880922
ESPNPLYEL	9	Unmodified	_ESPNPLYEL_					0	0	0			REV__ENST00000312756.4_1_3:158369993-158373740:+|nuORF	REV__ENST00000312756.4_1_3:158369993-158373740:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2595825195312	2	531.261122	1060.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.55	1	28.55	28.05	29.05	0								0	0	0	0.1219	1	9491	9491		66.429	2.222	1		+		9966	16281	6200	6229	10127	10127					-0.020142598931897737
ESPPHRPAL	9	Unmodified	_ESPPHRPAL_					0	0	0			REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2687683105469	2	502.269616	1002.52468	-0.073649	-3.6992E-05	-1.1388	-0.000572	-1.2125	-0.00060899	502.26895481073933	39.219	0.18826	39.219	39.125	39.313	0					12	6	2	0	0	0	0.41113	1	14902	14902		40.778	2.0246	1	153100	+		9967	19394	6201	6230	10128	10128					0.023517055032812095
ESPPSLAAPL	10	Unmodified	_ESPPSLAAPL_					0	0	0		ENSG00000187609|ENST00000340951|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF;nc|ENSG00000187609|Q8N9H8-4|EXD3	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.265869140625	2	491.266207	980.517862	0.58532	0.00028755	-0.33775	-0.00016592	0.24757	0.00012163	491.26573736977673	38.085	0.3264	38.085	37.874	38.201	0					21	11	3	0	0	0	0.37692	1	14912	14912		58.782	4.0056	1	182780			9968	7205	6202	6231	10129	10129					0.026823478320466165
ESQEGDECVK	10	Unmodified	_ESQEGDECVK_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;XIRP2|p.T1263A|1|0.31|ENSG00000163092|chr2:167245704-167245704|A/G|missense_variant;XIRP2|p.F1104Lfs*11|1|0.09|ENSG00000163092|chr2:167245228-167245229|-/ATCTTATCAATTGG|frameshift_variant;XIRP2|p.E1445Dfs*2|1|0.27|ENSG00000163092|chr2:167246249-167246262|TGAAAGAGAGATTT/-|frameshift_variant;XIRP2|p.R1906Nfs*2|1|0.48|ENSG00000163092|chr2:167247632-167247635|CAGA/-|frameshift_variant;XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.2308959960938	2	562.232235	1122.44992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.283	1	15.283	14.783	15.783	0								0	0	0	0.4201	1	3452	3452		14.865	0	1				9969	5527	6203	6232	10130	10130					-0.10640889880914983
ESQGKSRE	8	Unmodified	_ESQGKSRE_					0	0	0		PPP1R3A|p.K861Nfs*74|1|0.35|ENSG00000154415|chr7:113878509-113878509|T/-|frameshift_variant;ENSG00000154415|ENST00000284601|PPP1R3A	PPP1R3A|p.K861Nfs*74|1|0.35|ENSG00000154415|chr7:113878509-113878509|T/-|frameshift_variant	PPP1R3A|p.K861Nfs*74|1|0.35|ENSG00000154415|chr7:113878509-113878509|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7242736816406	2	460.725238	919.435923	-2.5391	-0.0011698	0.28247	0.00013014	-2.2567	-0.0010397	460.72551748919693	14.598	0.14004	14.598	14.545	14.685	0					12	5	3	0	0	0	0.7126	1	3112	3112		31.955	31.955	1	755470			9970	5087	6204	6233	10131	10131					-0.027017545270496157
ESQHQTREQ	9	Unmodified	_ESQHQTREQ_					0	0	0		ENSG00000204614|ENST00000396581|TRIM40	ENSG00000204614|ENST00000396581|TRIM40	ENSG00000204614|ENST00000396581|TRIM40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.7626953125	2	571.762883	1141.51121	-0.060715	-3.4715E-05	-0.53763	-0.0003074	-0.59834	-0.00034211	571.762958487376	13.414	0.41276	13.414	13.292	13.705	0					26	11	4	0	0	0	0.1424	1	3038	3038		69.628	2.6657	1	5740400			9971	7712	6205	6234	10132	10132					-0.05388197066622524
ESQKAGERAL	10	Unmodified	_ESQKAGERAL_					0	0	0			REV__ENSG00000171865|ENST00000315212|RNASEH1	REV__ENSG00000171865|ENST00000315212|RNASEH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.7899169921875	2	544.78837	1087.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.828	1	15.828	15.328	16.328	0								0	0	0	0.4146	1	3626	3626		26.063	0.48933	1		+		9972	16438	6206	6235	10133	10133					0.021907519782416784
ESQKLGAQFL	10	Unmodified	_ESQKLGAQFL_					0	0	0		ENSG00000205693|ENST00000381273|MANSC4	ENSG00000205693|ENST00000381273|MANSC4	ENSG00000205693|ENST00000381273|MANSC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8043212890625	2	560.803488	1119.59242	3.4693	0.0019456	-1.7288	-0.00096949	1.7406	0.00097611	560.801623856302	41.939	0.26092	41.939	41.804	42.065	0					13	7	2	0	0	0	0.44292	1	16703	16703		51.528	7.877	1	175890			9973	7756	6207	6236	10134	10134					0.03741110643431966
ESQRFPAE	8	Unmodified	_ESQRFPAE_					0	0	0			REV__MTTP|p.F840S|1|0.24|ENSG00000138823|chr4:99622682-99622682|T/C|missense_variant	REV__MTTP|p.F840S|1|0.24|ENSG00000138823|chr4:99622682-99622682|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7484436035156	2	482.230156	962.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.83	1	14.83	14.33	15.33	0								0	0	0	1.7419	1	3778	3778		60.972	2.19	1		+		9974	20900	6208	6237	10135	10135					-0.03696566521659861
ESQRTFSAR	9	Unmodified	_ESQRTFSAR_					0	0	0		ENSG00000164050|ENST00000296440|PLXNB1;nc|ENSG00000164050|O43157-2|PLXNB1;PLXNB1|p.R1634H|1|0.29|ENSG00000164050|chr3:48412574-48412574|C/T|missense_variant;ENST00000461261.1_1_3:48453511-48454330:-|nuORF;ENST00000485535.5_1_3:48445895-48454598:-|nuORF	ENSG00000164050|ENST00000296440|PLXNB1	ENSG00000164050|ENST00000296440|PLXNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2741088867188	2	541.272887	1080.53122	2.0135	0.0010899	0.51024	0.00027618	2.5238	0.001366	541.2732360356066	17.947	0.421	17.947	17.684	18.105	0					25	8	4	0	0	0	0.13267	1	5433	5433		71.877	18.526	1	1112800			9975	5643	6209	6238	10136	10136					-0.005824013360097524
ESQSGYVWN	9	Unmodified	_ESQSGYVWN_					0	0	0		PGBD4|p.A291V|1|0.37|ENSG00000182405|chr15:34103403-34103403|C/T|missense_variant;ENSG00000182405|ENST00000397766|PGBD4	PGBD4|p.A291V|1|0.37|ENSG00000182405|chr15:34103403-34103403|C/T|missense_variant	PGBD4|p.A291V|1|0.37|ENSG00000182405|chr15:34103403-34103403|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2314453125	2	535.232896	1068.45124	-0.60026	-0.00032128	-1.7515	-0.00093744	-2.3517	-0.0012587	535.2319532493923	15.548	0.27348	15.548	15.451	15.725	0					20	10	3	0	0	0	0.17854	1	3568	3568		64.207	0	1	370030			9976	6894	6210	6239	10137	10137					-0.08024887729857255
ESRALGVL	8	Unmodified	_ESRALGVL_					0	0	0			REV__SERAC1|p.I179V|1|0.1|ENSG00000122335|chr6:158144373-158144373|T/C|missense_variant	REV__SERAC1|p.I179V|1|0.1|ENSG00000122335|chr6:158144373-158144373|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7478332519531	2	422.747985	843.481417	-0.34417	-0.0001455	0.068874	2.9116E-05	-0.2753	-0.00011638	422.74800579007837	29.905	0.16596	29.905	29.798	29.963	0					5	3	2	0	0	0	0.58597	1	11022	11022		51.335	0	1	109390	+		9977	21503	6211	6240	10138	10138					0.05341515726013313
ESRFGKLKLVP	11	Unmodified	_ESRFGKLKLVP_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.9258117675781	3	425.259079	1272.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.317	1	14.317	13.817	14.817	0								0	0	0	0.43806	1	3686	3686		28.577	6.0151	1		+		9978	17610	6212	6241	10139	10139					0.12993913765262732
ESRGCALAAL	10	Unmodified	_ESRGCALAAL_					0	0	0			REV__ENST00000368547.3_1_10:135186895-135186961:-|nuORF	REV__ENST00000368547.3_1_10:135186895-135186961:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7578430175781	2	495.755484	989.496415	0.95577	0.00047383	1.252	0.0006207	2.2078	0.0010945	495.756455407072	25.556	0.80355	25.556	25.347	26.151	0					33	14	4	0	0	0	0.536	1	8997	8997		41.427	1.3684	1	1619800	+		9979	18607	6213	6242	10140	10140					0.0012463953169117303
ESRQRELS	8	Unmodified	_ESRQRELS_					0	0	0			REV__nc|ENSG00000100285|P12036-2|NEFH	REV__nc|ENSG00000100285|P12036-2|NEFH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.75958251953125	2	502.759612	1003.50467	-0.49564	-0.00024919	0.58677	0.000295	0.091131	4.5817E-05	502.75989661765163	18.379	0.16702	18.379	18.271	18.438	0					6	3	2	0	0	0	0.65276	1	5500	5500		40.573	10.069	1	1051100	+		9980	13534	6214	6243	10141	10141					0.003059097726691107
ESRVISQPD	9	Unmodified	_ESRVISQPD_					0	0	0		nc|ENSG00000123505|P17707-2|AMD1;ENSG00000123505|ENST00000368885|AMD1	nc|ENSG00000123505|P17707-2|AMD1	nc|ENSG00000123505|P17707-2|AMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2640380859375	2	515.76182	1029.50909	1.2185	0.00062844	-0.65476	-0.0003377	0.56371	0.00029074	515.7613122384234	38.532	0.28858	38.532	38.429	38.717	0					25	11	3	0	0	0	0.10915	1	14627	14627		77.318	10.888	1	517440			9981	3326	6215	6244	10142	10142					-0.004486258044153146
ESSACIWQN	9	Carbamidomethyl (C)	_ESSAC(Carbamidomethyl (C))IWQN_	ESSAC(1)IWQN		ESSAC(61)IWQN		0	1	0			REV__ENST00000376936.8_1_1:11136965-11137468:-|nuORF	REV__ENST00000376936.8_1_1:11136965-11137468:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.734375	2	547.732206	1093.44986	0.47093	0.00025794	3.0892	0.0016921	3.5602	0.00195	547.734211888354	14.729	0.18057	14.729	14.682	14.863	0					10	4	4	0	0	0	0.20551	1	3661	3661		60.972	11.53	1	457680	+		9982	18726	6216	6245	10143	10143	668				-0.09312845090266819
ESSARVQEK	9	Unmodified	_ESSARVQEK_					0	0	0		ENST00000456101.6_1_6:109766698-109772967:-|nuORF;MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2669067382812	2	517.26727	1032.51999	0.044346	2.2939E-05	-0.76192	-0.00039411	-0.71757	-0.00037118	517.26684313336	14.575	0.54033	14.575	14.483	15.023	0					21	13	4	0	0	0	0.28897	1	3585	3585		51.193	1.6567	1	4869300			9983	9684	6217	6246	10144	10144					0.005027765698514486
ESSAVGTSVI	10	Unmodified	_ESSAVGTSVI_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;CDH5|p.Y725Lfs*30|1|0.34|ENSG00000179776|chr16:66402979-66402980|-/C|frameshift_variant;CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.24530029296875	2	475.245472	948.476391	0.32078	0.00015245	-0.5458	-0.00025939	-0.22502	-0.00010694	475.2451019988419	24.368	0.31978	24.368	24.265	24.585	0					23	7	4	0	0	0	0.41335	1	8203	8203		54.776	3.5836	1	1684800			9984	454	6218	6247	10145	10145					9.1670727329074E-05
ESSFAKYI	8	Unmodified	_ESSFAKYI_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.73919677734375	2	472.739825	943.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.412	1	42.412	41.912	42.912	0								0	0	0	1.7419	1	16925	16925		53.351	7.3792	1		+		9985	14981	6219	6248	10146	10146					-0.00889610230751714
ESSGIAILN	9	Unmodified	_ESSGIAILN_					0	0	0			REV__nc|ENSG00000153904|O94760-2|DDAH1	REV__nc|ENSG00000153904|O94760-2|DDAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2469177246094	2	452.242732	902.470912	-0.11491	-5.1968E-05	-0.43666	-0.00019747	-0.55157	-0.00024944	452.242435992805	23.818	0.71472	23.818	23.612	24.326	0					43	14	6	0	0	0	0.45358	1	8197	8197		37.159	5.2042	1	13511000	+		9986	12683	6220	6249	10147	10147					0.015774882809068913
ESSIRPVPL	9	Unmodified	_ESSIRPVPL_					0	0	0			REV__ENST00000305366.7_1_3:149095461-149095638:-|nuORF	REV__ENST00000305366.7_1_3:149095461-149095638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.28759765625	2	499.287474	996.560395	-0.66119	-0.00033012	0.71322	0.0003561	0.052038	2.5982E-05	499.28781496450716	33.769	0.49826	33.769	33.546	34.044	0					20	12	2	0	0	0	0.24334	1	12929	12929		49.442	15.269	1	328990	+		9987	18238	6221	6250	10148	10148					0.061977429602734446
ESSNAMKYN	9	Unmodified	_ESSNAMKYN_					0	0	0			REV__nc|ENSG00000169064|A8MT70-3|ZBBX	REV__nc|ENSG00000169064|A8MT70-3|ZBBX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2271118164062	2	522.226756	1042.43896	0.40173	0.00020979	0.42549	0.0002222	0.82722	0.00043199	522.2269617416687	18.861	0.14798	18.861	18.762	18.91	0					11	4	3	0	0	0	0.18605	1	5018	5018		63.306	15.649	1	89718	+		9988	16291	6222	6251	10149	10149					-0.08056247464537591
ESSNIALA	8	Unmodified	_ESSNIALA_					0	0	0			REV__nc|ENSG00000052841|Q96AE7-2|TTC17	REV__nc|ENSG00000052841|Q96AE7-2|TTC17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.2530517578125	2	402.708525	803.402498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.033	1	16.033	15.533	16.533	0								0	0	0	1.7419	1	3585	3585		44.117	1.7207	1		+		9989	13042	6223	6252	10150	10150					-0.0070675629896186365
ESSPAPRLEPT	11	Unmodified	_ESSPAPRLEPT_					0	0	0		ENST00000264661.3_1_17:40332898-40333183:-|nuORF	ENST00000264661.3_1_17:40332898-40333183:-|nuORF	ENST00000264661.3_1_17:40332898-40333183:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.301513671875	2	592.30131	1182.58807	0.27114	0.00016059	0.31017	0.00018372	0.58131	0.00034431	592.3014721981829	34.833	0.3149	34.833	34.718	35.033	0					18	8	3	0	0	0	0.53842	1	13006	13006		41.427	5.8083	1	119760			9990	8333	6224	6253	10151	10151					0.004076014298789232
ESSQHVTQL	9	Unmodified	_ESSQHVTQL_					0	0	0		ENSG00000170961|ENST00000303924|HAS2;HAS2|p.G240Efs*6|1|0.41|ENSG00000170961|chr8:121617115-121617115|C/-|frameshift_variant	ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.75341796875	2	514.753995	1027.49344	1.1651	0.00059974	-1.5007	-0.0007725	-0.33561	-0.00017276	514.75294711346	36.867	0.20013	36.867	36.751	36.952	0					8	5	2	0	0	0	0.20551	1	13949	13949		60.972	4.2509	1	62439			9991	6270	6225	6254	10152	10152					-0.01920912321452306
ESSQKRMAK	9	Unmodified	_ESSQKRMAK_					0	0	0			REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2819213867188	2	532.77949	1063.54443	1.7234	0.00091822	1.4008	0.00074634	3.1243	0.0016646	532.7806297649302	38.598	0.51873	38.598	38.472	38.99	0					46	18	4	0	0	0	0.39215	1	15224	15224		42.396	10.866	1	870430	+		9992	15520	6226	6255	10153	10153					0.015197134517165978
ESSQPVGPV	9	Unmodified	_ESSQPVGPV_					0	0	0		ENSG00000158639|ENST00000374955|PAGE5;nc|ENSG00000158639|Q96GU1|PAGE5	ENSG00000158639|ENST00000374955|PAGE5	ENSG00000158639|ENST00000374955|PAGE5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.22723388671875	2	450.227082	898.439611	0.032676	1.4712E-05	-0.31525	-0.00014193	-0.28257	-0.00012722	450.22708801831243	20.37	0.13377	20.37	20.31	20.444	0					6	4	2	0	0	0	0.41113	1	5453	5453		40.778	1.5253	1	58270			9993	5275	6227	6256	10154	10154					-0.013670847531784602
ESSSLVGMVY	10	Unmodified	_ESSSLVGMVY_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2548217773438	2	536.254982	1070.49541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.87	1	43.87	43.37	44.37	0								0	0	0	0.35368	1	17575	17575		42.396	6.7778	1		+		9994	21220	6228	6257	10155	10155					-0.0370161962785005
ESSSSSKLKR	10	Unmodified	_ESSSSSKLKR_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8035888671875	2	554.801477	1107.5884	3.5833	0.001988	-0.46437	-0.00025763	3.119	0.0017304	554.8012894868873	34.172	0.79488	34.172	34.069	34.864	0					62	16	5	0	0	0	0.15878	2	13056	13056;13247		85.161	69.628	1	111900000	+		9995	13621	6229	6258	10156;10157	10156					0.03891021149729568
ESTDLDMLI	9	Unmodified	_ESTDLDMLI_					0	0	0		NUCB2|p.K251Qfs*4|1|0.28|ENSG00000070081|chr11:17311267-17311268|-/T|frameshift_variant;NUCB2|p.K400Nfs*15|2|0.29|ENSG00000070081|chr11:17330921-17330921|A/-|frameshift_variant;nc|ENSG00000070081|P80303-2|NUCB2;ENSG00000070081|ENST00000529010|NUCB2	NUCB2|p.K251Qfs*4|1|0.28|ENSG00000070081|chr11:17311267-17311268|-/T|frameshift_variant	NUCB2|p.K251Qfs*4|1|0.28|ENSG00000070081|chr11:17311267-17311268|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7459106445312	2	518.74699	1035.47943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.016	1	16.016	15.516	16.516	0								0	0	0	0.30835	1	4349	4349		33.516	1.5607	1				9996	1444	6230	6259	10158	10158					-0.03689325864775128
ESTTFHSW	8	Unmodified	_ESTTFHSW_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7179260253906	2	497.716882	993.41921	0.70272	0.00034976	2.1191	0.0010547	2.8218	0.0014045	497.7180117632832	34.564	0.20916	34.564	34.454	34.663	0					7	5	2	0	0	0	0.65276	1	12902	12902		40.573	1.7665	1	54680			9997	7741	6231	6260	10159	10159					-0.0777625541298903
ESTYYMEGN	9	Unmodified	_ESTYYMEGN_					0	0	0		ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2107543945312	2	547.210772	1092.40699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.231	1	16.231	15.731	16.731	0								0	0	0	0.3119	1	4597	4597		32.812	2.3088	1				9998	1962	6232	6261	10160	10160					-0.1355165993832088
ESVIDILECVG	11	Unmodified	_ESVIDILECVG_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7949829101562	2	588.794472	1175.57439	-0.15679	-9.2319E-05	1.4052	0.00082739	1.2484	0.00073507	588.794928895544	41.514	0.27571	41.514	41.38	41.656	0					22	11	3	0	0	0	0.45317	1	16321	16321		47.657	5.2612	1	268440	+		9999	16142	6233	6262	10161	10161					-0.006373923936052961
ESVLEVVR	8	Unmodified	_ESVLEVVR_					0	0	0		SYMPK|p.A678V|1|0.32|ENSG00000125755|chr19:45827871-45827871|G/A|missense_variant	SYMPK|p.A678V|1|0.32|ENSG00000125755|chr19:45827871-45827871|G/A|missense_variant	SYMPK|p.A678V|1|0.32|ENSG00000125755|chr19:45827871-45827871|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7657165527344	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.42	1	24.42	23.92	24.92	0								0	0	0	1.7419	1	7611	7611		47.916	7.1374	1				10000	22505	6234	6263	10162	10162					0.05061767551922003
ESVLRLRE	8	Unmodified	_ESVLRLRE_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;UBR5|p.E310D|1|0.19|ENSG00000104517|chr8:102342641-102342641|T/A|missense_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2916564941406	2	501.290548	1000.56654	0.93764	0.00047003	-1.2651	-0.00063416	-0.32742	-0.00016413	501.2897609102738	48.8	0.25359	48.8	48.635	48.888	0					18	15	2	0	0	0	0.75323	1	18411	18411		31.955	17.291	1	40869			10001	2292;23086	6235	6264	10163	10163					0.06628261191792717
ESVNVCKVVN	10	Unmodified	_ESVNVCKVVN_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7808837890625	2	545.781699	1089.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.118	1	45.118	44.618	45.618	0								0	0	0	0.37129	1	18074	18074		39.253	8.7492	1				10002	1561	6236	6265	10164	10164					0.007651778746321725
ESVSNVALSF	10	Unmodified	_ESVSNVALSF_					0	0	0			REV__PCDHGA3|p.A499Rfs*19|1|0.23|ENSG00000254245|chr5:141345524-141345524|G/-|frameshift_variant	REV__PCDHGA3|p.A499Rfs*19|1|0.23|ENSG00000254245|chr5:141345524-141345524|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7666625976562	2	526.766571	1051.51859	-1.2157	-0.00064038	0.96184	0.00050666	-0.25384	-0.00013371	526.7672813380638	25.592	0.13846	25.592	25.503	25.642	0					5	3	2	0	0	0	0.28036	1	8157	8157		69.628	2.134	1	61180	+		10003	17743	6237	6266	10165	10165					-0.005108575189069597
ESVTLIAEEP	10	Unmodified	_ESVTLIAEEP_					0	0	0			REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.28076171875	2	544.279512	1086.54447	1.9781	0.0010766	-0.040685	-2.2144E-05	1.9374	0.0010545	544.2797241579152	22.78	0.3667	22.78	22.572	22.939	0					18	7	4	0	0	0	0.4758	1	7641	7641		27.882	0	1	915810	+		10004	14412	6238	6267	10166	10166					0.00465991932696852
ESVVLELPDS	10	Unmodified	_ESVVLELPDS_					0	0	0			REV__nc|ENSG00000239998|Q8N149-3|LILRA2	REV__nc|ENSG00000239998|Q8N149-3|LILRA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2807006835938	2	544.279512	1086.54447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.722	1	22.722	22.222	23.222	0								0	0	0	0.36846	1	6816	6816		20.947	0	1		+		10005	17676	6239	6268	10167	10167					0.004659919327195894
ESVVVLGGSI	10	Unmodified	_ESVVVLGGSI_					0	0	0			REV__ENST00000376387.4_1_13:100153672-100153861:+|nuORF	REV__ENST00000376387.4_1_13:100153672-100153861:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2735595703125	2	480.274032	958.533512	-1.3877	-0.00066647	0.96244	0.00046224	-0.42525	-0.00020424	480.2744229642617	37.317	0.11546	37.317	37.265	37.381	0					9	6	2	0	0	0	0.30737	1	12620	12620		66.429	6.311	1	50411	+		10006	18717	6240	6269	10168	10168					0.052586343491157095
ESVYRLLE	8	Unmodified	_ESVYRLLE_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2729187011719	2	504.771657	1007.52876	2.9325	0.0014802	-2.3911	-0.0012069	0.54142	0.00027329	504.77029024463525	48.561	0.18785	48.561	48.48	48.668	0					12	10	2	0	0	0	0.61938	1	19288	19288		45.952	1.5748	1	55790	+		10007	15280	6241	6270	10169	10169					0.02529750206326753
ESVYRSTL	8	Unmodified	_ESVYRSTL_					0	0	0			REV__ENST00000401088.8_1_1:16722851-16723172:+|nuORF	REV__ENST00000401088.8_1_1:16722851-16723172:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.75164794921875	2	477.748182	953.481811	2.2283	0.0010646	1.8539	0.0008857	4.0822	0.0019503	477.7494681609463	38.101	0.53064	38.101	37.77	38.3	0					18	11	2	0	0	0	0.66095	1	14949	14949		39.253	3.6345	1	105690	+		10008	18947	6242	6271	10170	10170					0.0032089065520040094
ESWVQEYV	8	Unmodified	_ESWVQEYV_					0	0	0		ENST00000378350.4_17:34539872-34539968:+|nuORF;nc|ENSG00000276070|Q8NHW4-2|CCL4L1;nc|ENSG00000276070|Q8NHW4|CCL4L1;ENSG00000275302|ENST00000615863|CCL4	ENST00000378350.4_17:34539872-34539968:+|nuORF	ENST00000378350.4_17:34539872-34539968:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2415771484375	2	520.24019	1038.46583	0.65396	0.00034022	1.4694	0.00076443	2.1233	0.0011046	520.2410918634267	12.963	0.082371	12.963	12.912	12.994	0					8	3	3	0	0	0	0.61938	1	2495	2495		45.952	1.8352	1	898290			10009	8107	6243	6272	10171	10171					-0.051868155817146544
ESYLTLRPV	9	Unmodified	_ESYLTLRPV_					0	0	0			REV__nc|ENSG859|P60507|ERVFC1	REV__nc|ENSG859|P60507|ERVFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.30078125	2	539.300581	1076.58661	1.4308	0.00077161	-1.0601	-0.00057172	0.37064	0.00019989	539.299973186155	25.712	0.26502	25.712	25.552	25.817	0					8	4	3	0	0	0	0.41113	1	9173	9173		40.778	1.5253	1	113030	+		10010	21271	6244	6273	10172	10172					0.05138012131760661
ESYSVYVYK	9	Unmodified	_ESYSVYVYK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7785034179688	2	569.276772	1136.53899	1.7561	0.00099971	-0.67652	-0.00038512	1.0796	0.00061458	569.276192410891	34.303	0.40202	34.303	34.181	34.583	0					32	10	4	0	0	0	0.34452	1	12743	12743		47.657	12.039	1	1504000			10011	5257;7505	6245	6274	10173	10173					-0.023816868590984086
ESYSVYVYK	9	Unmodified	_ESYSVYVYK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2771606445312	2	569.276772	1136.53899	0.3522	0.0002005	0.51929	0.00029562	0.87149	0.00049612	569.2769392626648	34.253	0.50425	34.253	34.101	34.606	0					23	10	4	0	0	0	0.022525	1	13097	13097		125.81	81.437	1	1622300			10012	5257;7505	6245	6274	10174	10174					-0.023816868590984086
ESYSVYVYK	9	Unmodified	_ESYSVYVYK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.277099609375	2	569.276772	1136.53899	1.6327	0.00092945	0.28067	0.00015978	1.9134	0.0010892	569.2762686746349	34.249	0.6498	34.249	34.134	34.784	0					39	13	5	0	0	0	0.19952	1	13113	13113		64.207	0	1	2228900			10013	5257;7505	6245	6274	10175	10175					-0.023816868590984086
ETAAPPPQL	9	Unmodified	_ETAAPPPQL_					0	0	0			REV__nc|ENSG00000205879|Q658T7|FAM90A2P	REV__nc|ENSG00000205879|Q658T7|FAM90A2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2448425292969	2	462.245275	922.475997	0.71041	0.00032838	-1.2183	-0.00056315	-0.50789	-0.00023477	462.2446608067066	32.389	0.53505	32.389	32.262	32.798	0					28	13	4	0	0	0	0.16002	1	11893	11893		66.429	0.96389	1	1118000	+		10014	21197	6246	6275	10176	10176					0.011657921435130447
ETAAVTVAAA	10	Unmodified	_ETAAVTVAAA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2425231933594	2	452.242732	902.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.751	1	20.751	20.251	21.251	0								0	0	0	0.3428	1	6489	6489		44.117	3.3386	1				10015	11090	6247	6276	10177	10177					0.015774882808955226
ETAFLIQAL	9	Unmodified	_ETAFLIQAL_					0	0	0		nc|ENSG00000266200|P54317|PNLIPRP2	nc|ENSG00000266200|P54317|PNLIPRP2	nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.28460693359375	2	503.2844	1004.55425	1.1736	0.00059063	-1.6795	-0.00084526	-0.50592	-0.00025462	503.2837708012754	40.054	0.85049	40.054	39.602	40.453	0					30	19	2	0	0	0	0.24095	1	15984	15984		56.721	8.8055	1	124880			10016	11798	6248	6277	10178	10178					0.0521522472874949
ETAGPWGQ	8	Unmodified	_ETAGPWGQ_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.69635009765625	2	423.193042	844.371532	0.36138	0.00015294	3.1658	0.0013398	3.5272	0.0014927	423.1944671648833	23.405	0.10919	23.405	23.324	23.433	0					4	2	2	0	0	0	0.65276	1	7745	7745		40.573	5.3719	1	36487			10017	5975	6249	6278	10179	10179					-0.05687909613186548
ETAIIIQLL	9	Unmodified	_ETAIIIQLL_					0	0	0			REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D	REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.3137512207031	2	507.3157	1012.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.648	1	42.648	42.148	43.148	0								0	0	0	0.2591	1	14880	14880		42.396	3.1433	1		+		10018	13962	6250	6279	10180	10180					0.11104370796954299
ETAKLFEELTV	11	Unmodified	_ETAKLFEELTV_					0	0	0			REV__NUCB2|p.K400Nfs*15|2|0.29|ENSG00000070081|chr11:17330921-17330921|A/-|frameshift_variant	REV__NUCB2|p.K400Nfs*15|2|0.29|ENSG00000070081|chr11:17330921-17330921|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	640.3414306640625	2	640.342643	1278.67073	-0.77509	-0.00049633	-1.4489	-0.00092776	-2.2239	-0.0014241	640.341771419805	23.371	0.27343	23.371	23.276	23.549	0					19	9	4	0	0	0	0.65907	1	7007	7007		31.53	2.3598	1	570350	+		10019	13168	6251	6280	10181	10181					0.04254498437967413
ETALVSKQN	9	Unmodified	_ETALVSKQN_					0	0	0			REV__nc|ENSG00000164621|Q9Y6J3|SMAD5-AS1	REV__nc|ENSG00000164621|Q9Y6J3|SMAD5-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.26739501953125	2	495.266739	988.518924	0.70463	0.00034898	-0.049757	-2.4643E-05	0.65487	0.00032434	495.2667588099856	30.566	0.37928	30.566	30.448	30.827	0					25	8	4	0	0	0	0.16002	1	11422	11422		66.429	2.222	1	1073000	+		10020	21098	6252	6281	10182	10182					0.024205622009503713
ETAMTVAATLA	11	Unmodified	_ETAMTVAATLA_					0	0	0			REV__GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant	REV__GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7772216796875	2	539.776082	1077.53761	1.0216	0.00055144	1.1156	0.00060216	2.1372	0.0011536	539.7766818181839	31.927	0.18591	31.927	31.862	32.048	0					10	5	2	0	0	0	0.23884	1	11057	11057		69.628	14.544	1	119300	+		10021	15811	6253	6282	10183	10183					0.0019435578051343327
ETARAFAIK	9	Unmodified	_ETARAFAIK_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.7861328125	2	503.787641	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.089	1	22.089	21.589	22.589	0								0	0	0	0.24724	1	6447	6447		44.117	3.3386	1		+		10022	12991	6254	6283	10184	10184					0.05817162680136789
ETARALYSLG	10	Unmodified	_ETARALYSLG_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH;ENST00000471850.1_1_3:119298364-119306722:+|nuORF	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7922973632812	2	540.787838	1079.56112	3.5014	0.0018935	2.366	0.0012795	5.8674	0.003173	540.7896772344535	37.661	0.35327	37.661	37.434	37.787	0					15	7	3	0	0	0	0.27065	1	14744	14744		70.816	1.9701	1	439600			10023	4645	6255	6284	10185	10185					0.024525376093151863
ETATTPAKP	9	Unmodified	_ETATTPAKP_					0	0	0		ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469	ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant	ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.24261474609375	2	458.242732	914.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.26	1	35.26	34.76	35.76	0								0	0	0	0.21054	1	13209	13209		49.442	5.3247	1				10024	7869	6256	6285	10186	10186					0.010254882809022092
ETAVEAKVR	9	Unmodified	_ETAVEAKVR_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-3|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-3|CHD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7817687988281	2	501.782556	1001.55056	1.1364	0.00057023	-3.4	-0.001706	-2.2636	-0.0011358	501.7812578117187	19.583	0.1152	19.583	19.524	19.639	0					8	2	4	0	0	0	0.19605	1	6095	6095		62.107	5.3864	1	479320	+		10025	14633	6257	6286	10187	10187					0.04984554954910436
ETAVKELSY	9	Unmodified	_ETAVKELSY_					0	0	0		C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5;CON__Q1A7A4	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2691040039062	2	520.268947	1038.52334	-0.24088	-0.00012532	0.64012	0.00033304	0.39924	0.00020771	520.2693351443642	33.745	0.13134	33.745	33.667	33.799	0					5	3	2	0	0	0	0.030949	1	12951	12951		108.09	23.172	1	506320			10026	336	6258	6287	10188	10188					0.005620266238793192
ETAVLGNLL	9	Unmodified	_ETAVLGNLL_					0	0	0			REV__ENSG00000249222|ENST00000505920|ATP5MGL	REV__ENSG00000249222|ENST00000505920|ATP5MGL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.26885986328125	2	465.26875	928.522947	0.076583	3.5632E-05	0.39288	0.00018279	0.46946	0.00021842	465.26876695979996	34.053	0.19225	34.053	33.953	34.145	0					14	8	2	0	0	0	0.14603	1	11098	11098		68.787	2.3575	1	70356	+		10027	17720	6259	6288	10189	10189					0.05582651694669494
ETCKFGVR	8	Unmodified	_ETCKFGVR_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2427978515625	2	470.23947	938.464386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.719	1	20.719	20.219	21.219	0								0	0	0	1.7419	1	5834	5834		49.442	8.6634	1		+		10028	16578	6260	6289	10190	10190					-0.007307281514499664
ETCYRFHSL	9	Unmodified	_ETCYRFHSL_					0	0	0			REV__ENST00000426871.1_1_1:151262664-151263682:+|nuORF	REV__ENST00000426871.1_1_1:151262664-151263682:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.2659301757812	2	578.266216	1154.51788	3.2626	0.0018866	-2.5145	-0.001454	0.74812	0.00043261	578.2644886291752	39.988	0.35685	39.988	39.9	40.257	0					15	8	3	0	0	0	0.42902	1	15860	15860		39.253	1.4413	1	188270	+		10029	19122	6261	6290	10191	10191					-0.05319975439601876
ETDEKALEA	9	Unmodified	_ETDEKALEA_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.23736572265625	2	503.240386	1004.46622	-2.0508	-0.001032	-3.4203	-0.0017213	-5.4711	-0.0027533	503.2385581680276	20.605	0.13577	20.605	20.508	20.644	0					6	3	2	0	0	0	0.41113	1	5829	5829		40.778	1.5253	1	151290			10030	6255	6262	6291	10192	10192					-0.03583440652516856
ETDFRNLL	8	Unmodified	_ETDFRNLL_					0	0	0		MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|23|3|sense	MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|23|3|sense	MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|23|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2616882324219	2	504.261456	1006.50836	1.2063	0.0006083	-2.2579	-0.0011386	-1.0516	-0.00053026	504.26069772981225	34.93	0.36386	34.93	34.815	35.179	0					21	7	5	0	0	0	0.32597	1	13425	13425		68.787	17.451	1	1363400			10031	11359	6263	6292	10193	10193					0.00536579546530902
ETDHAIWR	8	Unmodified	_ETDHAIWR_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2537841796875	2	514.251423	1026.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.695	1	14.695	14.195	15.195	0								0	0	0	1.7419	1	3069	3069		25.45	4.5032	1		+		10032	17780	6264	6293	10194	10194					-0.02389171393451761
ETDKGLILR	9	Unmodified	_ETDKGLILR_					0	0	0			REV__tr|U7SL52|U7SL52_FUSNUVWFAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01984PE=4SV=1	REV__tr|U7SL52|U7SL52_FUSNUVWFAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01984PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3076171875	2	522.806031	1043.59751	-0.044931	-2.349E-05	0.87795	0.000459	0.83302	0.00043551	522.8065900715468	40.218	0.14321	40.218	40.13	40.273	0					9	5	2	0	0	0	0.4966	1	15859	15859		32.812	1.1781	1	105360	+		10033	21765	6265	6294	10195	10195					0.07745414506052839
ETDLPRGPHH	10	Unmodified	_ETDLPRGPHH_					0	0	0			REV__ENST00000561457.2_1_9:139007800-139008082:-|nuORF	REV__ENST00000561457.2_1_9:139007800-139008082:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7849731445312	2	579.786161	1157.55777	1.7418	0.0010099	-2.7398	-0.0015885	-0.998	-0.00057863	579.7843064147314	25.71	0.50109	25.71	25.448	25.949	0					20	8	3	0	0	0	0.39566	1	9045	9045		56.721	0.28726	1	1748500	+		10034	20295	6266	6295	10196	10196					-0.014707124446658781
ETDRYFLQ	8	Unmodified	_ETDRYFLQ_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.84173583984375	3	357.841701	1070.50327	1.4331	0.00051283	-1.2816	-0.00045862	0.1515	5.4214E-05	357.84121883130075	20.57	0.31974	20.57	20.462	20.781	0					12	6	4	0	0	0	0.69548	1	6698	6698		29.17	7.4843	1	1100800	+		10035	17352	6267	6296	10197	10197					-0.029157243160852886
ETEGPFGVII	10	Unmodified	_ETEGPFGVII_					0	0	0			REV__tr|U7SHD3|U7SHD3_FUSNUtRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaBPE=3SV=1	REV__tr|U7SHD3|U7SHD3_FUSNUtRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2778930664062	2	531.279315	1060.54408	0.2877	0.00015285	-3.0673	-0.0016296	-2.7796	-0.0014768	531.2777225972715	37.187	0.25228	37.187	37.076	37.328	0					12	7	2	0	0	0	0.60076	1	14522	14522		34.173	1.3601	1	156610	+		10036	21707	6268	6297	10198	10198					0.01622617003522464
ETEIIIER	8	Unmodified	_ETEIIIER_					0	0	0			REV__SLC8A3|p.G272E|1|0.3|ENSG00000100678|chr14:70167608-70167608|C/T|missense_variant	REV__SLC8A3|p.G272E|1|0.3|ENSG00000100678|chr14:70167608-70167608|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7767333984375	2	501.776939	1001.53933	0.95806	0.00048073	-2.4945	-0.0012517	-1.5365	-0.00077096	501.7752345059487	32.643	0.52781	32.643	32.447	32.974	0					26	13	3	0	0	0	0.41701	1	12419	12419		68.787	2.3575	1	918850	+		10037	21539	6269	6298	10199	10199					0.038617328607642776
ETEKLQKQL	9	Unmodified	_ETEKLQKQL_					0	0	0		ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	ENSG00000173805|ENST00000347901|HAP1	ENSG00000173805|ENST00000347901|HAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.817626953125	2	558.816596	1115.61864	0.52578	0.00029381	-0.33069	-0.00018479	0.19509	0.00010902	558.8175506501843	28.366	0.32635	28.366	28.238	28.564	0					13	8	2	0	0	0	0.19605	1	10021	10021		62.107	3.8775	1	297770			10038	6451	6270	6299	10200	10200					0.06545379814906482
ETEPVYERA	9	Unmodified	_ETEPVYERA_					0	0	0		ENSG00000162086|ENST00000669516|ZNF75A;ENST00000571101.5_1_16:3355511-3366938:+|nuORF;ENST00000498240.6_1_16:3358428-3366938:+|nuORF	ENSG00000162086|ENST00000669516|ZNF75A	ENSG00000162086|ENST00000669516|ZNF75A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2631225585938	2	547.261653	1092.50875	1.1392	0.00062342	1.6459	0.00090076	2.7851	0.0015242	547.2626173384942	22.414	0.15418	22.414	22.333	22.488	0					5	3	2	0	0	0	0.55379	1	6694	6694		26.693	2.1737	1	95377			10039	5441	6271	6300	10201	10201					-0.03380045524272646
ETEQQQKEE	9	Unmodified	_ETEQQQKEE_					0	0	0		DENND4A|p.S1755Vfs*10|1|0.47|ENSG00000174485|chr15:65664687-65664687|T/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	DENND4A|p.S1755Vfs*10|1|0.47|ENSG00000174485|chr15:65664687-65664687|T/-|frameshift_variant	DENND4A|p.S1755Vfs*10|1|0.47|ENSG00000174485|chr15:65664687-65664687|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.7554931640625	2	574.756932	1147.49931	-0.20007	-0.00011499	-1.5755	-0.0009055	-1.7755	-0.0010205	574.755830409491	27.939	0.21078	27.939	27.831	28.042	0					8	4	2	0	0	0	0.44593	1	10194	10194		37.812	0	1	62739			10040	770	6272	6301	10202	10202					-0.0685385860047063
ETFGKTQLT	9	Unmodified	_ETFGKTQLT_					0	0	0			REV__ENSG00000196581|ENST00000378191|AJAP1	REV__ENSG00000196581|ENST00000378191|AJAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7694702148438	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.231	1	28.231	27.731	28.731	0								0	0	0	0.27939	1	8795	8795		39.253	0.44669	1		+		10041	17272	6273	6302	10203	10203					0.01285446343717922
ETFPITEL	8	Unmodified	_ETFPITEL_					0	0	0			REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1	REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2543640136719	2	475.247483	948.480414	2.3171	0.0011012	4.0509	0.0019252	6.368	0.0030264	475.2496069430897	33.002	0.94401	33.002	32.438	33.382	0					43	19	4	0	0	0	0.39542	1	12320	12320		71.378	2.8932	1	1156800	+		10042	13960	6274	6303	10204	10204					0.004112565664286194
ETFPKKIGR	9	Unmodified	_ETFPKKIGR_					0	0	0			REV__GPT2|p.G202Afs*8|1|0.19|ENSG00000166123|chr16:46909708-46909708|G/-|frameshift_variant	REV__GPT2|p.G202Afs*8|1|0.19|ENSG00000166123|chr16:46909708-46909708|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.2139892578125	3	359.213469	1074.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.08	1	27.08	26.58	27.58	0								0	0	0	0.37517	1	8812	8812		18.262	0.79408	1		+		10043	16092	6275	6304	10205	10205					0.0842542460554796
ETFSGVYKK	9	Unmodified	_ETFSGVYKK_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.77978515625	2	529.779482	1057.54441	0.11395	6.0367E-05	-0.091565	-4.8509E-05	0.022381	1.1857E-05	529.7797174156462	22.927	0.25918	22.927	22.834	23.093	0					12	6	3	0	0	0	0.28897	1	7524	7524		51.193	5.2407	1	967900			10044	6329	6276	6305	10206	10206					0.017940367233904908
ETFSGVYKK	9	Unmodified	_ETFSGVYKK_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7789916992188	2	529.779482	1057.54441	0.025266	1.3385E-05	0.20709	0.00010971	0.23236	0.0001231	529.7796455443108	22.651	0.21104	22.651	22.565	22.776	0					11	7	2	0	0	0	0.21263	1	6698	6698		60.118	17.644	1	305350			10045	6329	6276	6305	10207	10207					0.017940367233904908
ETFSGVYKK	9	Unmodified	_ETFSGVYKK_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7797241210938	2	529.779482	1057.54441	-1.1914	-0.00063119	1.9607	0.0010387	0.76927	0.00040754	529.7807076757365	22.731	0.18952	22.731	22.635	22.825	0					9	4	3	0	0	0	0.1424	1	6808	6808		69.628	14.123	1	408060			10046	6329	6276	6305	10208	10208					0.017940367233904908
ETFYIGKL	8	Unmodified	_ETFYIGKL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.1796875	3	324.179654	969.517133	0.28855	9.3542E-05	0.18604	6.0311E-05	0.47459	0.00015385	324.1797158734278	17.024	0.88408	17.024	16.743	17.627	0					45	31	2	0	0	0	0.8006	1	3912	3912		16.473	0	1	133570			10047	2567	6277	6306	10209	10209					0.031155531829995198
ETGETSKAL	9	Unmodified	_ETGETSKAL_					0	0	0			REV__ENSG00000197763|ENST00000524230|TXNRD3	REV__ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2386169433594	2	468.237647	934.460741	-0.51403	-0.00024069	0.96	0.00044951	0.44597	0.00020882	468.2381797129759	19.055	0.51153	19.055	18.897	19.409	0					28	10	4	0	0	0	0.087861	1	5805	5805		82.241	5.4664	1	5390900	+		10048	17355	6278	6307	10210	10210					-0.00911119444333508
ETGGTLAGKAI	11	Unmodified	_ETGGTLAGKAI_					0	0	0			REV__nc|ENSG00000135525|Q14244-5|MAP7	REV__nc|ENSG00000135525|Q14244-5|MAP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.28253173828125	2	509.282389	1016.55022	-1.8594	-0.00094694	2.4006	0.0012226	0.54124	0.00027564	509.28348209651875	34.277	0.15559	34.277	34.221	34.376	0					8	5	2	0	0	0	0.44903	1	12112	12112		47.96	2.0076	1	128300	+		10049	14808	6279	6308	10211	10211					0.04261135235049096
ETGMSRRPAGP	11	Unmodified	_ETGMSRRPAGP_					0	0	0		ENST00000318584.9_1_19:47260376-47260967:+|nuORF	ENST00000318584.9_1_19:47260376-47260967:+|nuORF	ENST00000318584.9_1_19:47260376-47260967:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7891235351562	2	579.787847	1157.56114	1.7389	0.0010082	1.1226	0.00065089	2.8615	0.0016591	579.788443928252	41.441	0.17329	41.441	41.357	41.53	0					6	4	2	0	0	0	0.45317	1	16494	16494		47.657	0	1	68675			10050	8597	6280	6309	10212	10212					-0.011337856623185871
ETGPAHRR	8	Unmodified	_ETGPAHRR_					0	0	0			REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1	REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2453918457031	2	462.243932	922.473312	4.18	0.0019322	-1.5343	-0.00070922	2.6457	0.001223	462.24310902353284	32.161	0.1885	32.161	32.077	32.266	0					15	8	2	0	0	0	0.65276	1	10698	10698		40.573	1.5511	1	117760	+		10051	20473	6281	6310	10213	10213					0.008973815292392828
ETGPCVYQL	9	Unmodified	_ETGPCVYQL_					0	0	0			REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant	REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2362060546875	2	505.236593	1008.45863	1.2262	0.0006195	-0.33978	-0.00017167	0.88637	0.00044783	505.2363623722334	50.159	0.11208	50.159	50.085	50.197	0					8	5	2	0	0	0	0.47038	1	19822	19822		35.618	5.1146	1	50267	+		10052	16393	6282	6311	10214	10214					-0.04525871453790842
ETGQLKQF	8	Unmodified	_ETGQLKQF_					0	0	0			REV__VPS9D1|p.A137T|1|0.32|ENSG00000075399|chr16:89716484-89716484|C/T|missense_variant	REV__VPS9D1|p.A137T|1|0.32|ENSG00000075399|chr16:89716484-89716484|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7508850097656	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.467	1	46.467	45.967	46.967	0								0	0	0	1.7419	1	18595	18595		38.806	5.9937	1		+		10053	22279	6283	6312	10215	10215					0.010131945178045498
ETGQVPSLHNL	11	Unmodified	_ETGQVPSLHNL_					0	0	0			REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.8752136230469	3	398.875293	1193.60405	0.39971	0.00015943	-0.79916	-0.00031877	-0.39946	-0.00015933	398.8749943083904	25.558	0.26993	25.558	25.397	25.667	0					14	5	4	0	0	0	0.65378	1	8976	8976		32.034	2.8641	1	518180	+		10054	12115	6284	6313	10216	10216					0.01499307666790628
ETGRLICLY	9	Unmodified	_ETGRLICLY_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2801513671875	2	534.281334	1066.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.252	1	34.252	33.752	34.752	0								0	0	0	0.24724	1	11192	11192		44.117	1.6423	1		+		10055	15922	6285	6314	10217	10217					0.017503832255897578
ETGSLDFRTF	10	Unmodified	_ETGSLDFRTF_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.7827758789062	2	586.782753	1171.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.804	1	39.804	39.304	40.304	0								0	0	0	0.40063	1	15667	15667		30.318	1.1477	1				10056	6642	6286	6315	10218	10218					-0.0279607011589178
ETGSRLVVV	9	Unmodified	_ETGSRLVVV_					0	0	0		L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|1|1|sense	L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|1|1|sense	L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|1|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.27923583984375	2	480.279649	958.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.978	1	21.978	21.478	22.478	0								0	0	0	0.28666	1	6469	6469		37.812	1.3648	1				10057	11274	6287	6316	10219	10219					0.063814564432505
ETGTGLEVRG	10	Unmodified	_ETGTGLEVRG_					0	0	0			REV__ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	REV__ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.79974365234375	2	509.76182	1017.50909	0.2274	0.00011592	0.51939	0.00026476	0.74678	0.00038068	509.7620153724554	34.648	0.29429	34.648	34.49	34.784	0					12	8	2	0	0	0	0.44469	1	12224	12224		51.335	8.9393	1	61296	+		10058	17627	6288	6317	10220	10220					0.0010337419557799876
ETGWSKPSK	9	Unmodified	_ETGWSKPSK_					0	0	0		IGSF1|p.H803Tfs*4|1|0.66|ENSG00000147255|chrX:131277140-131277140|G/-|frameshift_variant;nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;nc|ENSG00000147255|Q8N6C5-3|IGSF1;IGSF1|p.N277Mfs*10|1|0.37|ENSG00000147255|chrX:131283102-131283102|T/-|frameshift_variant	IGSF1|p.H803Tfs*4|1|0.66|ENSG00000147255|chrX:131277140-131277140|G/-|frameshift_variant	IGSF1|p.H803Tfs*4|1|0.66|ENSG00000147255|chrX:131277140-131277140|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.26165771484375	2	510.261456	1018.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.793	1	37.793	37.293	38.293	0								0	0	0	0.22284	1	13525	13525		47.657	3.2801	1				10059	4773	6289	6318	10221	10221					-0.00015420453473780071
ETGYGKTRLI	10	Unmodified	_ETGYGKTRLI_					0	0	0		RNF213|p.C2424Y|1|0.17|ENSG00000173821|chr17:80345606-80345606|G/A|missense_variant	RNF213|p.C2424Y|1|0.17|ENSG00000173821|chr17:80345606-80345606|G/A|missense_variant	RNF213|p.C2424Y|1|0.17|ENSG00000173821|chr17:80345606-80345606|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.316162109375	2	569.316763	1136.61897	0.10569	6.0172E-05	-1.2812	-0.00072939	-1.1755	-0.00066922	569.3156202744321	24.203	0.42205	24.203	23.96	24.382	0					22	13	3	0	0	0	0.39647	1	7390	7390		44.377	5.1244	1	226800			10060	22351	6290	6319	10222	10222					0.05612799534765145
ETHENTSGL	9	Unmodified	_ETHENTSGL_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.22210693359375	2	494.222528	986.430503	-2.5229	-0.0012469	2.002	0.00098945	-0.52089	-0.00025744	494.2233241957111	19.101	0.1416	19.101	19.009	19.151	0					5	3	2	0	0	0	0.37197	1	5133	5133		44.117	2.6902	1	77555			10061	3216	6291	6320	10223	10223					-0.06325478109511096
ETHIRQHAT	9	Unmodified	_ETHIRQHAT_					0	0	0			REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7828369140625	2	546.780879	1091.5472	3.8178	0.0020875	-4.4419	-0.0024287	-0.62414	-0.00034127	547.2792185368019	28.487	0.5661	28.487	28.277	28.843	0					32	11	5	0	0	0	0.21263	1	10409	10409		60.118	1.8883	1	2219400	+		10062	17820	6292	6321	10224	10224					0.00509304900879215
ETHKPHSAFLL	11	Unmodified	_ETHKPHSAFLL_					0	0	0		ENST00000396526.7_1_14:35032263-35032341:-|nuORF	ENST00000396526.7_1_14:35032263-35032341:-|nuORF	ENST00000396526.7_1_14:35032263-35032341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	640.3417358398438	2	640.343312	1278.67207	-2.2771	-0.0014581	-0.72739	-0.00046578	-3.0045	-0.0019239	640.3428627484017	23.426	0.18826	23.426	23.326	23.514	0					10	4	3	0	0	0	0.6208	1	7136	7136		19.104	4.9664	1	256110			10063	9206	6293	6322	10225	10225					0.043881773174234695
ETHLSYTQL	9	Unmodified	_ETHLSYTQL_					0	0	0			REV__WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	REV__WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2739868164062	2	546.272021	1090.52949	3.7835	0.0020668	0.13173	7.196E-05	3.9152	0.0021388	546.2720207756145	29.625	0.50573	29.625	29.424	29.93	0					20	10	3	0	0	0	0.24095	1	10862	10862		56.721	1.9447	1	1013600	+		10064	16657	6294	6323	10226	10226					-0.012154551446201367
ETHLVQPSS	9	Unmodified	_ETHLVQPSS_					0	0	0			REV__nc|ENSG00000184381|O60733-3|PLA2G6	REV__nc|ENSG00000184381|O60733-3|PLA2G6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.24896240234375	2	499.251089	996.487624	-0.051569	-2.5746E-05	-3.7892	-0.0018918	-3.8408	-0.0019175	499.24930744211997	25.16	0.14908	25.16	25.077	25.226	0					7	4	2	0	0	0	0.16002	1	7535	7535		66.429	15.094	1	53950	+		10065	16979	6295	6324	10227	10227					-0.010760108331396623
ETHPVPQKK	9	Unmodified	_ETHPVPQKK_					0	0	0		ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2992553710938	2	532.298373	1062.58219	0.28892	0.00015379	0.25636	0.00013646	0.54528	0.00029025	532.2995123059565	26.648	0.56187	26.648	26.493	27.055	0					20	11	3	0	0	0	0.48389	1	9577	9577		34.173	3.6689	1	231980			10066	6457	6296	6325	10228	10228					0.05340547708851773
ETHVGLLGEY	10	Unmodified	_ETHVGLLGEY_					0	0	0		ENSG00000103723|ENST00000535359|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.2799072265625	2	559.279846	1116.54514	0.62153	0.00034761	-0.94559	-0.00052885	-0.32406	-0.00018124	559.2793219325837	34.02	0.15085	34.02	33.877	34.028	0					6	3	2	0	0	0	0.47859	1	13042	13042		47.657	4.7931	1	61955			10067	2258	6297	6326	10229	10229					-0.008471686275470347
ETIALEKEQK	10	Unmodified	_ETIALEKEQK_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;ENST00000497815.5_1_7:101459310-101755188:+|nuORF;CUX1|p.A591Qfs*9|1|0.06|ENSG00000257923|chr7:102197181-102197182|-/CAGT|frameshift_variant;ENST00000465461.6_1_7:101747665-101768865:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.88763427734375	3	396.887199	1187.63977	-0.07214	-2.8631E-05	0.7786	0.00030902	0.70646	0.00028039	396.88762353863467	13.892	0.15439	13.892	13.844	13.998	0					11	7	2	0	0	0	0.70274	1	2778	2778		21.686	2.4231	1	123900			10068	720;10693	6298	6327	10230	10230					0.053453451237373883
ETIDRIIL	8	Unmodified	_ETIDRIIL_					0	0	0			REV__tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	REV__tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.78912353515625	2	486.78985	971.565146	-0.31029	-0.00015104	-1.3772	-0.00067042	-1.6875	-0.00082146	486.78922990296155	35.502	0.3046	35.502	35.406	35.711	0					10	8	2	0	0	0	0.57171	1	13334	13334		52.937	1.6012	1	290830	+		10069	22042	6299	6328	10231	10231					0.07822627103041668
ETIEDLPG	8	Unmodified	_ETIEDLPG_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2145080566406	2	437.21364	872.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.154	1	22.154	21.654	22.654	0								0	0	0	1.7419	1	6220	6220		26.796	2.2921	1				10070	3407	6300	6329	10232	10232					-0.028581933643863522
ETIEKELNK	9	Unmodified	_ETIEKELNK_					0	0	0		MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant;MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant;MON2|p.V1435Afs*17|1|0.03|ENSG00000061987|chr12:62566430-62566431|-/CATCT|frameshift_variant;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3010864257812	2	552.300778	1102.587	1.8247	0.0010078	-1.1922	-0.00065845	0.63256	0.00034936	552.2999698823776	23.967	0.49685	23.967	23.647	24.144	0					16	11	3	0	0	0	0.048471	1	8022	8022		95.815	2.2176	1	415350			10071	1327	6301	6330	10233	10233					0.03981387060935049
ETIGILISH	9	Unmodified	_ETIGILISH_					0	0	0			REV__nc|ENSG00000185133|Q15735-2|INPP5J	REV__nc|ENSG00000185133|Q15735-2|INPP5J	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.7818603515625	2	491.782025	981.549496	-1.2624	-0.00062083	1.0952	0.00053859	-0.16723	-8.2243E-05	491.7825318257003	35.302	0.22916	35.302	35.212	35.441	0					22	10	3	0	0	0	0.35045	1	11937	11937		45.952	1.8352	1	333120	+		10072	17010	6302	6331	10234	10234					0.05798340585999995
ETIGILISH	9	Unmodified	_ETIGILISH_					0	0	0			REV__nc|ENSG00000185133|Q15735-2|INPP5J	REV__nc|ENSG00000185133|Q15735-2|INPP5J	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7815856933594	2	491.782025	981.549496	0.57985	0.00028516	-1.349	-0.00066339	-0.76911	-0.00037824	491.7813167542347	35.537	0.2262	35.537	35.422	35.648	0					11	6	2	0	0	0	0.41113	1	13786	13786		40.778	5.1599	1	2028100	+		10073	17010	6302	6331	10235	10235					0.05798340585999995
ETIILKQIK	9	Unmodified	_ETIILKQIK_					0	0	0			REV__FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	REV__FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3510131835938	2	543.350074	1084.6856	2.0059	0.0010899	-1.0252	-0.00055702	0.98072	0.00053288	543.3494361159558	27.602	0.51787	27.602	27.441	27.959	0					21	10	4	0	0	0	0.30841	1	9912	9912		42.396	3.1433	1	523360	+		10074	14136	6303	6332	10236	10236					0.14664035096643602
ETIKLGIKS	9	Unmodified	_ETIKLGIKS_					0	0	0		ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.2060241699219	3	330.206092	987.596446	0.52546	0.00017351	-0.65571	-0.00021652	-0.13025	-4.3011E-05	330.2058679865461	28.639	0.29264	28.639	28.553	28.846	0					14	7	3	0	0	0	0.41113	1	10150	10150		47.96	0	1	474070			10075	2431	6304	6333	10237	10237					0.10215200137133706
ETILGESRL	9	Unmodified	_ETILGESRL_					0	0	0			REV__CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant	REV__CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2825622558594	2	509.282389	1016.55022	0.19433	9.897E-05	-0.065413	-3.3314E-05	0.12892	6.5657E-05	509.2829413843136	34.285	0.13276	34.285	34.198	34.331	0					6	4	2	0	0	0	0.27249	1	12117	12117		52.937	8.8199	1	92486	+		10076	12408	6305	6334	10238	10238					0.04261135235049096
ETITKETKF	9	Unmodified	_ETITKETKF_					0	0	0		ZNF471|p.E158K|1|0.06|ENSG00000196263|chr19:56524539-56524539|G/A|missense_variant	ZNF471|p.E158K|1|0.06|ENSG00000196263|chr19:56524539-56524539|G/A|missense_variant	ZNF471|p.E158K|1|0.06|ENSG00000196263|chr19:56524539-56524539|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.2010192871094	3	366.201007	1095.58119	0.75271	0.00027564	-0.65408	-0.00023952	0.098634	3.612E-05	366.2006992780955	25.294	0.31366	25.294	25.195	25.509	0					17	7	3	0	0	0	0.43426	1	8634	8634		37.812	1.4939	1	2342700			10077	23157	6306	6335	10239	10239					0.03722288549283803
ETKDKTQKL	9	Unmodified	_ETKDKTQKL_					0	0	0		ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8113403320312	2	545.808771	1089.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.241	1	31.241	30.741	31.741	0								0	0	0	0.0019965	1	11762	11762		120.87	0	1				10078	5913	6307	6336	10240	10240					0.06177093297856118
ETKEMARK	8	Unmodified	_ETKEMARK_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.76397705078125	2	496.763309	991.512065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.85	1	13.85	13.35	14.35	0								0	0	0	1.7419	1	2905	2905		37.159	0	1				10079	5365	6308	6337	10241	10241					0.015969260487281645
ETKIVIKVD	9	Unmodified	_ETKIVIKVD_					0	0	0			REV__nc|ENSG00000181220|Q6NUN9-3|ZNF746	REV__nc|ENSG00000181220|Q6NUN9-3|ZNF746	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.88116455078125	3	348.881497	1043.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.643	1	34.643	34.143	35.143	0								0	0	0	0.35737	1	11336	11336		23.523	1.8369	1		+		10080	16840	6309	6338	10242	10242					0.10259469308630287
ETKIVIKVD	9	Unmodified	_ETKIVIKVD_					0	0	0			REV__nc|ENSG00000181220|Q6NUN9-3|ZNF746	REV__nc|ENSG00000181220|Q6NUN9-3|ZNF746	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.2155456542969	3	348.881497	1043.62266	-0.80817	-0.00028196	0.1671	5.8297E-05	-0.64108	-0.00022366	348.8815350150055	34.699	0.15736	34.699	34.635	34.792	0					11	7	2	0	0	0	0.28504	1	11709	11709		51.528	15.081	1	202730	+		10081	16840	6309	6338	10243	10243					0.10259469308630287
ETKIVIKVD	9	Unmodified	_ETKIVIKVD_					0	0	0			REV__nc|ENSG00000181220|Q6NUN9-3|ZNF746	REV__nc|ENSG00000181220|Q6NUN9-3|ZNF746	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.8812561035156	3	348.881497	1043.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.655	1	34.655	34.155	35.155	0								0	0	0	0.27521	1	12286	12286		40.058	4.9061	1		+		10082	16840	6309	6338	10244	10244					0.10259469308630287
ETKKEVEL	8	Unmodified	_ETKKEVEL_					0	0	0		ENSG00000092295|ENST00000206765|TGM1;nc|ENSG00000092295|P22735-2|TGM1	ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2715148925781	2	488.27149	974.528426	-0.52201	-0.00025488	0.17376	8.4842E-05	-0.34825	-0.00017004	488.27151942666353	32.832	0.22	32.832	32.721	32.941	0					9	4	3	0	0	0	0.32597	1	12423	12423		79.713	5.5476	1	442660			10083	1873	6310	6339	10245	10245					0.040143304864727725
ETKKTAIVV	9	Unmodified	_ETKKTAIVV_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2909851074219	2	494.8055	987.596446	-0.065516	-3.2417E-05	-1.8981	-0.00093921	-1.9637	-0.00097163	494.8053057379136	23.485	0.25747	23.485	23.397	23.655	0					15	9	2	0	0	0	0.44593	1	6778	6778		37.812	11.015	1	171920			10084	1390	6311	6340	10246	10246					0.10215200137122338
ETKLKITQL	9	Unmodified	_ETKLKITQL_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3322143554688	2	537.331882	1072.64921	1.9773	0.0010625	-1.1149	-0.00059909	0.86238	0.00046338	537.3313050371165	22.63	0.41772	22.63	22.521	22.939	0					18	8	4	0	0	0	0.070005	1	7566	7566		88.177	13.134	1	1507100			10085	6245	6312	6341	10247	10247					0.11579158199947415
ETKQLTEM	8	Unmodified	_ETKQLTEM_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;ENST00000426582.2_1_13:77502247-77502832:+|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.24169921875	2	490.241875	978.469197	0.44582	0.00021856	-0.92258	-0.00045229	-0.47676	-0.00023373	490.2415736905403	23.424	0.19088	23.424	23.324	23.515	0					13	4	4	0	0	0	0.25248	1	7740	7740		138.48	7.4482	1	761260			10086	4688	6313	6342	10248	10248					-0.020898887993666904
ETKSVLSL	8	Unmodified	_ETKSVLSL_					0	0	0			REV__nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A	REV__nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.755615234375	2	438.755475	875.496398	-0.9814	-0.00043059	-0.36326	-0.00015938	-1.3447	-0.00058998	438.75596362806453	25.062	0.10699	25.062	24.995	25.102	0					5	3	2	0	0	0	0.61925	1	7759	7759		45.972	1.5951	1	46076	+		10087	15127	6314	6343	10249	10249					0.05366962803338993
ETKVCERITQ	10	Carbamidomethyl (C)	_ETKVC(Carbamidomethyl (C))ERITQ_	ETKVC(1)ERITQ		ETKVC(42)ERITQ		0	1	0			REV__PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant	REV__PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.88348388671875	3	421.883572	1262.62889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.54	1	21.54	21.04	22.04	0								0	0	0	0.35404	1	7027	7027		42.338	8.4164	1		+		10088	13082	6315	6344	10250	10250	510				0.008076194778141144
ETLALTKL	8	Unmodified	_ETLALTKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7734069824219	2	444.773668	887.532783	0.55369	0.00024626	-0.97575	-0.00043399	-0.42206	-0.00018772	444.7729663517277	38.538	0.21162	38.538	38.472	38.683	0					13	7	3	0	0	0	0.46905	1	15119	15119		63.306	15.391	1	91612			10089	1637	6316	6345	10251	10251					0.08451839700023811
ETLAPIKR	8	Unmodified	_ETLAPIKR_					0	0	0		ENST00000259895.8_1_6:30876031-30876811:+|nuORF;ENST00000376316.5_1_6:30876031-30877229:+|nuORF	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7763671875	2	464.284734	926.554916	0.68997	0.00032034	-0.33866	-0.00015724	0.35131	0.00016311	464.2846748494599	35.15	0.4374	35.15	35.028	35.466	0					37	12	6	0	0	0	0.44433	1	13571	13571		65.803	19.851	1	2168200			10090	14025	6317	6346	10252	10252					0.08870064168456793
ETLAVPRE	8	Unmodified	_ETLAVPRE_					0	0	0		nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4;ENSG00000196440|ENST00000423738|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7493591308594	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.104	1	25.104	24.604	25.604	0								0	0	0	1.7419	1	7766	7766		27.882	0	1				10091	7361	6318	6347	10253	10253					0.026691945178072274
ETLDSVLKK	9	Unmodified	_ETLDSVLKK_					0	0	0		ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8010864257812	2	516.800414	1031.58628	1.2679	0.00065526	0.46557	0.00024061	1.7335	0.00089587	516.8004680756987	26.048	0.34337	26.048	25.874	26.218	0					24	8	4	0	0	0	0.30951	1	8945	8945		49.442	13.823	1	1362100			10092	2949	6319	6348	10254	10254					0.07174592411888625
ETLETIKK	8	Unmodified	_ETLETIKK_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.28179931640625	2	481.281857	960.549162	-1.3515	-0.00065046	2.0149	0.00096973	0.66338	0.00031927	481.28277055947706	22.654	0.13375	22.654	22.565	22.699	0					7	4	2	0	0	0	0.5676	1	6702	6702		53.351	1.0523	1	76255	+		10093	16749	6320	6349	10255	10255					0.06730920866152701
ETLGLRQR	8	Unmodified	_ETLGLRQR_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7808837890625	2	486.78289	971.551228	-2.9124	-0.0014177	-1.3669	-0.00066538	-4.2793	-0.0020831	486.78206706891626	19.739	0.25835	19.739	19.522	19.781	0					10	6	2	0	0	0	0.37378	1	5406	5406		73.975	2.679	1	156450			10094	1303	6321	6350	10256	10256					0.06431394394610379
ETLGPLLR	8	Unmodified	_ETLGPLLR_					0	0	0			REV__ENST00000588933.5_1_19:9529933-9544772:-|nuORF	REV__ENST00000588933.5_1_19:9529933-9544772:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.7715148925781	2	449.77146	897.528367	-0.097382	-4.38E-05	0.23041	0.00010363	0.13302	5.9831E-05	449.77147356372757	34.928	0.24772	34.928	34.805	35.052	0					19	7	3	0	0	0	0.59411	1	13483	13483		50.025	2.1089	1	214800	+		10095	20505	6322	6351	10257	10257					0.07550375277139665
ETLIPQIML	9	Unmodified	_ETLIPQIML_					0	0	0		tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1	tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1	tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3037109375	2	529.301736	1056.58892	3.4526	0.0018275	0.47504	0.00025144	3.9276	0.0020789	529.3018105752518	30.552	0.25611	30.552	30.458	30.714	0					11	5	3	0	0	0	0.20551	1	11337	11337		60.972	4.2509	1	744350			10096	22722	6323	6352	10258	10258					0.06288724545220248
ETLKGPQPL	9	Unmodified	_ETLKGPQPL_					0	0	0			REV__ENST00000556716.5_1_14:21485757-21486740:-|nuORF	REV__ENST00000556716.5_1_14:21485757-21486740:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.78173828125	2	491.782025	981.549496	-0.54407	-0.00026756	0.1108	5.4492E-05	-0.43327	-0.00021307	491.782022549962	35.528	0.42212	35.528	35.406	35.829	0					28	11	3	0	0	0	0.24095	1	13318	13318		56.721	1.9447	1	1593300	+		10097	20255	6324	6353	10259	10259					0.05798340585999995
ETLKQITL	8	Unmodified	_ETLKQITL_					0	0	0			REV__tr|U7ST18|U7ST18_FUSNURibosomalRNAsmallsubunitmethyltransferaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01248PE=3SV=1	REV__tr|U7ST18|U7ST18_FUSNURibosomalRNAsmallsubunitmethyltransferaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01248PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.28460693359375	2	473.2844	944.554247	-0.14096	-6.6712E-05	0.15728	7.444E-05	0.016329	7.7284E-06	473.2845898301003	36.188	0.14818	36.188	36.142	36.29	0					8	5	2	0	0	0	0.61925	1	12946	12946		45.972	9.5255	1	77713	+		10098	21890	6325	6354	10260	10260					0.07975224728750163
ETLKQITL	8	Unmodified	_ETLKQITL_					0	0	0			REV__tr|U7ST18|U7ST18_FUSNURibosomalRNAsmallsubunitmethyltransferaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01248PE=3SV=1	REV__tr|U7ST18|U7ST18_FUSNURibosomalRNAsmallsubunitmethyltransferaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01248PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2841491699219	2	473.2844	944.554247	-0.58155	-0.00027524	-1.2137	-0.00057444	-1.7953	-0.00084967	473.28344050408674	36.338	0.41457	36.338	36.233	36.647	0					15	8	3	0	0	0	0.25873	1	14122	14122		96.19	11.03	1	696690	+		10099	21890	6325	6354	10261	10261					0.07975224728750163
ETLLNLICN	9	Unmodified	_ETLLNLICN_					0	0	0			REV__ENSG00000084092|ENST00000264230|NOA1	REV__ENSG00000084092|ENST00000264230|NOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.775390625	2	516.773342	1031.53213	1.2656	0.00065401	3.993	0.0020635	5.2586	0.0027175	516.7759138557115	32.829	0.20613	32.829	32.709	32.915	0					11	5	3	0	0	0	0.12239	1	12081	12081		74.255	0	1	312490	+		10100	13344	6326	6355	10262	10262					0.017626769886874172
ETLMEQAVAAV	11	Unmodified	_ETLMEQAVAAV_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.2915649414062	2	581.294639	1160.57472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.514	1	17.514	17.014	18.014	0								0	0	0	0.2166	1	4381	4381		61.691	13.732	1				10101	2547	6327	6356	10263	10263					0.0008602732623330667
ETLMRINA	8	Oxidation (M)	_ETLM(Oxidation (M))RINA_		ETLM(1)RINA		ETLM(74)RINA	0	0	1		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.249755859375	2	482.250034	962.485516	0.16442	7.9292E-05	-0.8192	-0.00039506	-0.65478	-0.00031577	482.2496823475412	22.587	0.19839	22.587	22.437	22.635	0					9	4	3	0	0	0	0.37144	1	6763	6763		74.255	13.283	1	141690			10102	3404	6328	6357	10264	10264		147			0.002772371574110366
ETLMVIVK	8	Unmodified	_ETLMVIVK_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7777404785156	2	466.777896	931.54124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.311	1	36.311	35.811	36.811	0								0	0	0	1.7419	1	12994	12994		31.955	3.7006	1		+		10103	13305	6329	6358	10265	10265					0.07273070345024735
ETLPEEVG	8	Unmodified	_ETLPEEVG_					0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2143859863281	2	437.21364	872.412728	-0.63329	-0.00027688	2.3454	0.0010255	1.7121	0.00074857	437.2145775664877	22.21	0.37615	22.21	22.111	22.488	0					12	8	3	0	0	0	0.57802	1	6585	6585		52.299	6.3472	1	283440			10104	4804	6330	6359	10266	10266					-0.028581933643749835
ETLPRHSSGP	10	Unmodified	_ETLPRHSSGP_					0	0	0			REV__ENST00000510527.5_1_4:113153247-113186224:+|nuORF	REV__ENST00000510527.5_1_4:113153247-113186224:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7741088867188	2	540.775262	1079.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.118	1	28.118	27.618	28.618	0								0	0	0	0.37129	1	9289	9289		39.253	6.4404	1		+		10105	14991	6331	6360	10267	10267					-0.000615171932395242
ETLQLSCL	8	Unmodified	_ETLQLSCL_					0	0	0			REV__nc|ENSG00000198963|Q92753|RORB	REV__nc|ENSG00000198963|Q92753|RORB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7325439453125	2	453.733686	905.452819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.214	1	34.214	33.714	34.714	0								0	0	0	1.7419	1	12090	12090		39.253	5.0803	1		+		10106	21188	6332	6361	10268	10268					-0.003689699654614742
ETLRASDIL	9	Unmodified	_ETLRASDIL_					0	0	0		CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant;CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2822570800781	2	509.282389	1016.55022	-0.51652	-0.00026306	0.79439	0.00040457	0.27786	0.00014151	509.2825381014793	34.288	0.15856	34.288	34.245	34.404	0					12	7	2	0	0	0	0.36892	1	11558	11558		44.377	1.981	1	129510			10107	485	6333	6362	10269	10269					0.04261135235049096
ETLRISFAM	9	Unmodified	_ETLRISFAM_					0	0	0			REV__tr|U7T5M2|U7T5M2_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00013PE=4SV=1	REV__tr|U7T5M2|U7T5M2_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00013PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2804565429688	2	534.281334	1066.54812	-0.54964	-0.00029366	-0.10222	-5.4616E-05	-0.65187	-0.00034828	534.2820559977645	30.975	0.39161	30.975	30.775	31.167	0					48	14	5	0	0	0	0.14603	1	10186	10186		68.787	18.762	1	980260	+		10108	22185	6334	6363	10270	10270					0.017503832255670204
ETLRQREL	8	Unmodified	_ETLRQREL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7958984375	2	522.793455	1043.57236	3.4077	0.0017815	0.96101	0.00050241	4.3687	0.0022839	522.7936932037767	25.238	0.70941	25.238	25.127	25.837	0					34	12	3	0	0	0	0.53424	1	8797	8797		56.721	0	1	13892000			10109	1050	6335	6364	10271	10271					0.05231359703475391
ETLRSGELL	9	Unmodified	_ETLRSGELL_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.28228759765625	2	509.282389	1016.55022	1.343	0.00068397	-1.4118	-0.00071899	-0.068769	-3.5023E-05	509.28161079851805	34.481	0.4067	34.481	34.277	34.684	0					19	8	3	0	0	0	0.15163	1	13212	13212		67.494	0	1	484720			10110	4572	6336	6365	10272	10272					0.04261135235049096
ETLSKGLVVA	10	Unmodified	_ETLSKGLVVA_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.5374755859375	3	339.53773	1015.59136	0.22547	7.6555E-05	-0.1509	-5.1236E-05	0.07457	2.5319E-05	339.5376543544579	22.529	0.13358	22.529	22.46	22.594	0					10	4	3	0	0	0	0.42631	1	6375	6375		56.434	12.057	1	157410	+		10111	14395	6337	6366	10273	10273					0.08418896274531562
ETLSKGLVVA	10	Unmodified	_ETLSKGLVVA_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5377197265625	3	339.53773	1015.59136	0.51206	0.00017386	-0.46999	-0.00015958	0.042069	1.4284E-05	339.53755263988575	22.842	0.17418	22.842	22.756	22.93	0					13	4	4	0	0	0	0.37692	1	7483	7483		61.691	18.827	1	2921900	+		10112	14395	6337	6366	10274	10274					0.08418896274531562
ETLSKGLVVA	10	Unmodified	_ETLSKGLVVA_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.5376281738281	3	339.53773	1015.59136	-0.70267	-0.00023858	0.458	0.00015551	-0.24468	-8.3077E-05	339.53792318862605	22.562	0.1366	22.562	22.494	22.63	0					7	4	2	0	0	0	0.52707	1	6664	6664		38.754	0	1	483260	+		10113	14395	6337	6366	10275	10275					0.08418896274531562
ETLSKGLVVA	10	Unmodified	_ETLSKGLVVA_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.5377197265625	3	339.53773	1015.59136	0.52975	0.00017987	-0.39085	-0.00013271	0.1389	4.7163E-05	339.5375847484025	22.736	0.36688	22.736	22.628	22.995	0					15	7	4	0	0	0	0.357	1	7747	7747		63.534	7.1001	1	986730	+		10114	14395	6337	6366	10276	10276					0.08418896274531562
ETLSLQSQDT	10	Unmodified	_ETLSLQSQDT_					0	0	0			REV__DRC7|p.K380Q|1|0.05|ENSG00000159625|chr16:57718407-57718407|A/C|missense_variant	REV__DRC7|p.K380Q|1|0.05|ENSG00000159625|chr16:57718407-57718407|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2742309570312	2	561.269675	1120.5248	3.4696	0.0019474	3.5723	0.002005	7.0419	0.0039524	561.271523570081	34.885	0.31489	34.885	34.75	35.065	0					10	6	3	0	0	0	0.31613	1	13440	13440		65.465	10.689	1	503930	+		10115	12739	6338	6367	10277	10277					-0.03064384078038529
ETLSNKKK	8	Unmodified	_ETLSNKKK_					0	0	0		ENSG00000132718|ENST00000368324|SYT11	ENSG00000132718|ENST00000368324|SYT11	ENSG00000132718|ENST00000368324|SYT11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.281005859375	2	474.279649	946.544745	0.60826	0.00028849	0.70455	0.00033415	1.3128	0.00062264	474.2799899631559	45.055	0.24319	45.055	44.898	45.141	0					17	13	2	0	0	0	0.72381	1	17457	17457		30.504	0	1	42265			10116	3813	6339	6368	10278	10278					0.06933456443232444
ETLTLQKI	8	Unmodified	_ETLTLQKI_					0	0	0		nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2839660644531	2	473.2844	944.554247	-0.022621	-1.0706E-05	-0.77472	-0.00036666	-0.79734	-0.00037737	473.28398531496015	36.12	0.17902	36.12	36.062	36.241	0					12	8	2	0	0	0	0.41701	1	11855	11855		68.787	5.4806	1	138680			10117	6058	6340	6369	10279	10279					0.07975224728750163
ETLTMATVCL	10	Unmodified	_ETLTMATVCL_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2703247070312	2	541.267035	1080.51952	2.0656	0.001118	3.9779	0.0021531	6.0435	0.0032711	541.2687898242659	32.218	0.16769	32.218	32.153	32.321	0					9	3	3	0	0	0	0.30737	1	12160	12160		66.429	15.237	1	323580			10118	4241	6341	6370	10280	10280					-0.01752102465866301
ETLVEAVNK	9	Unmodified	_ETLVEAVNK_					0	0	0		nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;ENSG00000086102|ENST00000379540|NFX1	nc|ENSG00000086102|Q12986-2|NFX1	nc|ENSG00000086102|Q12986-2|NFX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7767028808594	2	501.776939	1001.53933	0.14362	7.2066E-05	-1.6846	-0.00084531	-1.541	-0.00077324	501.77566089152856	32.419	0.28462	32.419	32.354	32.639	0					16	9	2	0	0	0	0.33044	1	11270	11270		47.657	4.7931	1	118370			10119	1743	6342	6371	10281	10281					0.038617328607642776
ETLVFSHNAV	10	Unmodified	_ETLVFSHNAV_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7863159179688	2	558.787838	1115.56112	1.2897	0.00072065	-2.6465	-0.0014789	-1.3569	-0.0007582	558.7861872788242	23.748	0.12612	23.748	23.681	23.807	0					7	4	2	0	0	0	0.61187	1	6921	6921		32.812	3.6629	1	61409			10120	3335	6343	6372	10282	10282					0.007965376093125087
ETLWPWID	8	Unmodified	_ETLWPWID_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2613525390625	2	530.260925	1058.5073	1.6471	0.00087341	-0.53258	-0.00028241	1.1146	0.00059101	530.2606144257438	39.915	2.3018	39.915	38.729	41.03	0					164	49	5	0	0	0	0.54629	1	15613	15613		55.504	0.72789	1	2372700			10121	854	6344	6373	10283	10283					-0.019616348223962632
ETMLDTFE	8	Unmodified	_ETMLDTFE_					0	0	0			REV__nc|ENSG00000164050|O43157-2|PLXNB1;REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.21136474609375	2	493.212783	984.411013	-0.74407	-0.00036698	-2.4782	-0.0012223	-3.2222	-0.0015893	493.21129932408985	33.642	0.13535	33.642	33.546	33.681	0					5	3	2	0	0	0	0.70055	1	12898	12898		33.516	0	1	106210	+		10122	17425;15951	6345	6374	10284	10284					-0.08181570444628505
ETMMFTFHK	9	Unmodified	_ETMMFTFHK_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.2677001953125	2	586.26737	1170.52019	1.418	0.0008313	-1.3776	-0.00080766	0.040335	2.3647E-05	586.2666468943263	36.863	0.29368	36.863	36.741	37.035	0					15	9	2	0	0	0	0.50761	1	14352	14352		24.519	0	1	178240			10123	7494	6346	6375	10285	10285					-0.05825263026144967
ETMMFTFHK	9	Unmodified	_ETMMFTFHK_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.267333984375	2	586.26737	1170.52019	1.4784	0.00086675	-0.82242	-0.00048216	0.656	0.00038459	586.2666017137448	36.769	0.31306	36.769	36.664	36.977	0					14	6	3	0	0	0	0.25761	1	14333	14333		47.657	19.775	1	173050			10124	7494	6346	6375	10286	10286					-0.05825263026144967
ETMRRRGAL	9	Unmodified	_ETMRRRGAL_					0	0	0		ENST00000465232.5_1_10:124713958-124742814:+|nuORF	ENST00000465232.5_1_10:124713958-124742814:+|nuORF	ENST00000465232.5_1_10:124713958-124742814:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.8695068359375	3	363.869708	1088.5873	0.47723	0.00017365	-0.74729	-0.00027192	-0.27006	-9.8265E-05	363.8693481743047	27.205	0.26426	27.205	27.114	27.378	0					11	6	2	0	0	0	0.50858	1	9504	9504		31.53	2.3598	1	289950			10125	9774	6347	6376	10287	10287					0.04654528299829508
ETNATTLLL	9	Unmodified	_ETNATTLLL_					0	0	0		DPP10|p.I438Ffs*4|2|0.31|ENSG00000175497|chr2:115777293-115777293|A/-|frameshift_variant;DPP10|p.L441Sfs*4|1|0.21|ENSG00000175497|chr2:115777790-115777791|-/T|frameshift_variant;nc|ENSG00000175497|Q8N608-4|DPP10;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10	DPP10|p.I438Ffs*4|2|0.31|ENSG00000175497|chr2:115777293-115777293|A/-|frameshift_variant	DPP10|p.I438Ffs*4|2|0.31|ENSG00000175497|chr2:115777293-115777293|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2715148925781	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.646	1	32.646	32.146	33.146	0								0	0	0	0.28666	1	11372	11372		37.812	0.65241	1				10126	841	6348	6377	10288	10288					0.0401433048649551
ETNFNKVF	8	Unmodified	_ETNFNKVF_					0	0	0		nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7504577636719	2	499.750724	997.486896	2.9187	0.0014586	-2.7028	-0.0013507	0.21595	0.00010792	499.7493604351465	51.268	0.072865	51.268	51.204	51.277	0					7	4	2	0	0	0	0.3961	1	20079	20079		71.296	7.0884	1	69061			10127	2704	6349	6378	10289	10289					-0.011948054821800724
ETNPAVLSF	9	Unmodified	_ETNPAVLSF_					0	0	0			REV__KIF20B|p.N445*|1|0.1|ENSG00000138182|chr10:89718763-89718764|-/T|frameshift_variant	REV__KIF20B|p.N445*|1|0.1|ENSG00000138182|chr10:89718763-89718764|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.248291015625	2	489.250557	976.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.189	1	26.189	25.689	26.689	0								0	0	0	0.1633	1	7926	7926		56.721	10.769	1		+		10128	14963	6350	6379	10290	10290					-0.00262225202038735
ETNSGVRVM	9	Unmodified	_ETNSGVRVM_					0	0	0			REV__RIMBP3|p.K953N|1|0.04|ENSG00000275793|chr22:18608576-18608576|C/A|missense_variant	REV__RIMBP3|p.K953N|1|0.04|ENSG00000275793|chr22:18608576-18608576|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7450866699219	2	496.745116	991.475679	0.98014	0.00048688	-0.98519	-0.00048939	-0.005049	-2.5081E-06	496.7445995986965	16.442	0.4678	16.442	16.183	16.65	0					19	9	4	0	0	0	0.17854	1	4562	4562		64.207	0	1	977700	+		10129	21467	6351	6380	10291	10291					-0.020399508479727047
ETPCLAVRK	9	Unmodified	_ETPCLAVRK_					0	0	0			REV__ENST00000374403.3_1_X:69549299-69549356:+|nuORF	REV__ENST00000374403.3_1_X:69549299-69549356:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.78057861328125	2	508.781502	1015.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.063	1	37.063	36.563	37.563	0								0	0	0	0.28996	1	14024	14024		37.159	0	1		+		10130	18694	6352	6381	10292	10292					0.041298029454537755
ETPGVPREAE	10	Unmodified	_ETPGVPREAE_					0	0	0		ENST00000439332.1_1:144301112-144301436:-|nuORF	ENST00000439332.1_1:144301112-144301436:-|nuORF	ENST00000439332.1_1:144301112-144301436:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.76953125	2	542.767103	1083.51965	3.6015	0.0019548	0.89488	0.00048571	4.4964	0.0024405	542.7674816565722	33.424	0.51221	33.424	33.121	33.633	0					23	10	3	0	0	0	0.536	1	12717	12717		41.427	41.427	1	1225600			10131	9559	6353	6382	10293	10293					-0.018766431499898317
ETPHLKLGL	9	Unmodified	_ETPHLKLGL_					0	0	0		nc|ENSG00000188343|A1XBS5-5|CIBAR1;ENST00000523577.5_1_8:94712794-94713716:+|nuORF;nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	nc|ENSG00000188343|A1XBS5-5|CIBAR1	nc|ENSG00000188343|A1XBS5-5|CIBAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5340576171875	3	336.53432	1006.58113	-0.7028	-0.00023652	0.54473	0.00018332	-0.15807	-5.3196E-05	336.53468355038433	18.554	1.3845	18.554	18.457	19.842	0					108	44	6	0	0	0	0.5654	1	5193	5193		32.812	6.1195	1	70070000			10132	7248	6354	6383	10294	10294					0.0781033333993264
ETPICDRI	8	Unmodified	_ETPICDRI_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;CR1|p.P1583Lfs*44|1|0.22|ENSG00000203710|chr1:207609487-207609487|C/-|frameshift_variant	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7388916015625	2	473.73676	945.458967	3.6832	0.0017449	0.68829	0.00032607	4.3715	0.0020709	473.73718475578903	31.908	0.1821	31.908	31.823	32.005	0					11	7	2	0	0	0	0.66372	1	10622	10622		38.806	4.6336	1	71140			10133	7656	6355	6384	10295	10295					-0.015944517339335107
ETPKLHVPS	9	Unmodified	_ETPKLHVPS_					0	0	0		ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;SLC4A5|p.S1062Pfs*46|1|0.26|ENSG00000188687|chr2:74224950-74224950|A/-|frameshift_variant;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5	ENST00000483195.5_1_2:74452054-74512997:-|nuORF	ENST00000483195.5_1_2:74452054-74512997:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.27984619140625	2	504.279649	1006.54475	1.0276	0.00051821	-1.2084	-0.00060939	-0.18081	-9.118E-05	504.2790015067946	41.704	0.18195	41.704	41.607	41.789	0					12	7	2	0	0	0	0.35045	1	16382	16382		45.952	1.8352	1	105900			10134	7265	6356	6385	10296	10296					0.0417345644324314
ETPKSPPPA	9	Unmodified	_ETPKSPPPA_					0	0	0		ENST00000570631.5_1_16:67927225-67942650:+|nuORF	ENST00000570631.5_1_16:67927225-67942650:+|nuORF	ENST00000570631.5_1_16:67927225-67942650:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2490539550781	2	462.245275	922.475997	0.081751	3.7789E-05	-0.40786	-0.00018853	-0.32611	-0.00015074	462.2450580844435	27.855	0.51923	27.855	27.676	28.195	0					35	12	4	0	0	0	0.37197	1	9903	9903		44.117	3.3386	1	2480000			10135	10799	6357	6386	10297	10297					0.011657921435244134
ETPMPPPLPP	10	Unmodified	_ETPMPPPLPP_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2791137695312	2	538.27826	1074.54197	-0.25516	-0.00013735	3.6362	0.0019573	3.381	0.0018199	538.2801491976421	29.226	0.29852	29.226	29.018	29.317	0					15	12	2	0	0	0	0.58896	1	9505	9505		35.618	1.4457	1	48188			10136	1957	6358	6387	10298	10298					0.00767864994077172
ETPPGLPR	8	Unmodified	_ETPPGLPR_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.7397766113281	2	433.74016	865.465767	-2.9559	-0.0012821	1.9313	0.0008377	-1.0245	-0.00044437	433.741193907333	29.64	0.13093	29.64	29.563	29.694	0					6	3	2	0	0	0	0.76283	1	9993	9993		25.45	2.4135	1	52319	+		10137	14172	6359	6388	10299	10299					0.027652292089555885
ETPPNPSAL	9	Unmodified	_ETPPNPSAL_					0	0	0		ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;CAMSAP3|p.R336Gfs*42|2|0.21|ENSG00000076826|chr19:7610883-7610883|C/-|frameshift_variant;CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant;CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant;CAMSAP3|p.E835Rfs*154|1|0.18|ENSG00000076826|chr19:7612990-7612990|C/-|frameshift_variant	ENSG00000076826|ENST00000160298|CAMSAP3	ENSG00000076826|ENST00000160298|CAMSAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.23455810546875	2	463.234907	924.455261	-2.409	-0.0011159	3.632	0.0016825	1.223	0.00056655	463.23581173246697	30.917	0.28439	30.917	30.786	31.07	0					15	7	3	0	0	0	0.25716	1	10581	10581		54.776	1.4249	1	169000			10138	1568	6360	6389	10300	10300					-0.00998798236150833
ETPVGWPQA	9	Unmodified	_ETPVGWPQA_					0	0	0			REV__FSTL4|p.G790Vfs*6|1|0.38|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant	REV__FSTL4|p.G790Vfs*6|1|0.38|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7434387207031	2	492.742899	983.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.287	1	12.287	11.787	12.787	0								0	0	0	0.28996	1	2554	2554		37.159	8.0096	1		+		10139	20682	6361	6390	10301	10301					-0.02115091999246488
ETQALKQKI	9	Unmodified	_ETQALKQKI_					0	0	0		ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000573615.5_1_16:30391180-30392483:-|nuORF	ENSG00000180096|ENST00000321367|SEPTIN1	ENSG00000180096|ENST00000321367|SEPTIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8141479492188	2	529.813856	1057.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.406	1	15.406	14.906	15.906	0								0	0	0	0.18645	1	4207	4207		52.937	0	1				10140	6791	6362	6391	10302	10302					0.08665701023096517
ETQDTHQPSPA	11	Unmodified	_ETQDTHQPSPA_					0	0	0			REV__nc|ENSG00000179889|Q6P996-3|PDXDC1	REV__nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.7691650390625	2	605.770374	1209.52619	0.42637	0.00025828	-1.5834	-0.00095919	-1.157	-0.0007009	605.7693531270124	31.179	0.14838	31.179	31.109	31.257	0					5	3	2	0	0	0	0.75295	1	11737	11737		22.58	0.61977	1	67217	+		10141	16792	6363	6392	10303	10303					-0.07018749989265416
ETQFVRQL	8	Unmodified	_ETQFVRQL_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2	REV__ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.8537292480469	3	340.853941	1019.53999	0.37401	0.00012748	-0.76574	-0.00026101	-0.39173	-0.00013352	340.85362885004014	20.733	0.10651	20.733	20.669	20.776	0					5	3	2	0	0	0	0.74405	1	5609	5609		30.318	30.318	1	311450	+		10142	13102	6364	6393	10304	10304					0.031005723004682295
ETQLQAALL	9	Unmodified	_ETQLQAALL_					0	0	0		RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant;ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7793273925781	2	493.779482	985.544411	-0.068588	-3.3867E-05	-0.5133	-0.00025346	-0.58189	-0.00028733	493.77921819550863	27.926	0.59797	27.926	27.708	28.306	0					48	20	3	0	0	0	0.33044	1	8627	8627		47.657	2.6351	1	164480			10143	6947	6365	6394	10305	10305					0.05106036723384477
ETQNVETKL	9	Unmodified	_ETQNVETKL_					0	0	0		KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant;KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.K592Rfs*4|1|0.37|ENSG00000138182|chr10:89724010-89724010|A/-|frameshift_variant	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7802124023438	2	531.277303	1060.54005	-0.16113	-8.5603E-05	1.2465	0.00066226	1.0854	0.00057666	531.2777696718113	25.534	0.17934	25.534	25.45	25.629	0					10	6	2	0	0	0	0.22837	1	7949	7949		58.23	0	1	124910			10144	4237	6366	6395	10306	10306					0.012205275098040147
ETQPKSLIS	9	Unmodified	_ETQPKSLIS_					0	0	0			REV__ENSG00000109944|ENST00000227349|JHY	REV__ENSG00000109944|ENST00000227349|JHY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.77679443359375	2	501.776939	1001.53933	-2.0912	-0.0010493	2.2422	0.0011251	0.151	7.5767E-05	501.7777697006857	32.442	0.19609	32.442	32.343	32.539	0					15	6	3	0	0	0	0.47473	1	11266	11266		35.152	2.3396	1	176990	+		10145	13921	6367	6396	10307	10307					0.038617328607642776
ETQSLHTID	9	Unmodified	_ETQSLHTID_					0	0	0			REV__ENSG00000112818|ENST00000230588|MEP1A	REV__ENSG00000112818|ENST00000230588|MEP1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.255126953125	2	522.253828	1042.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.233	1	16.233	15.733	16.733	0								0	0	0	0.15451	1	3853	3853		58.782	0.55203	1		+		10146	14015	6368	6397	10308	10308					-0.026443320413363836
ETQSYKSI	8	Unmodified	_ETQSYKSI_					0	0	0			REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.23907470703125	2	478.24019	954.465826	-0.11668	-5.5801E-05	-1.8265	-0.00087352	-1.9432	-0.00092932	478.2391869805096	36.511	0.37167	36.511	36.292	36.663	0					16	10	2	0	0	0	0.46905	1	14201	14201		63.306	2.3343	1	122030	+		10147	12251	6369	6398	10309	10309					-0.013228155817046172
ETQTLRQGV	9	Unmodified	_ETQTLRQGV_					0	0	0		nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;HDAC9|p.D553Mfs*46|1|0.4|ENSG00000048052|chr7:18666406-18666412|CAGTGGA/-|frameshift_variant;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000048052|Q9UKV0-6|HDAC9	nc|ENSG00000048052|Q9UKV0-10|HDAC9	nc|ENSG00000048052|Q9UKV0-10|HDAC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2769165039062	2	516.277638	1030.54072	-0.048871	-2.5231E-05	0.43531	0.00022474	0.38644	0.00019951	516.2775589587656	23.227	0.10416	23.227	23.148	23.252	0					6	3	2	0	0	0	0.35021	1	6955	6955		45.972	5.1941	1	73620			10148	1226	6370	6399	10310	10310					0.026673669495039576
ETQVRQLEA	9	Unmodified	_ETQVRQLEA_					0	0	0			REV__ZNF616|p.K153R|1|0.09|ENSG00000204611|chr19:52116706-52116706|T/C|missense_variant	REV__ZNF616|p.K153R|1|0.09|ENSG00000204611|chr19:52116706-52116706|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2831420898438	2	537.28292	1072.55129	1.3842	0.0007437	-0.85143	-0.00045746	0.53276	0.00028624	537.2824935498985	30.696	0.1204	30.696	30.634	30.754	0					10	5	2	0	0	0	0.27249	1	9794	9794		52.937	1.744	1	197550	+		10149	22331	6371	6400	10311	10311					0.017913496039454913
ETQYQDLS	8	Unmodified	_ETQYQDLS_					0	0	0			REV__RASGRP2|p.R494Afs*25|1|0.15|ENSG00000068831|chr11:64730128-64730128|C/-|frameshift_variant	REV__RASGRP2|p.R494Afs*25|1|0.15|ENSG00000068831|chr11:64730128-64730128|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.218994140625	2	492.219454	982.424355	-1.2639	-0.0006221	0.47586	0.00023423	-0.78801	-0.00038787	492.21955454881623	33.165	0.24689	33.165	33.072	33.319	0					22	10	3	0	0	0	0.58597	1	11115	11115		51.335	4.8787	1	236900	+		10150	13153	6372	6401	10312	10312					-0.06755996341030368
ETREKELEQ	9	Unmodified	_ETREKELEQ_					0	0	0		CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN	CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant	CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.2901000976562	2	581.290942	1160.56733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.116	1	32.116	31.616	32.616	0								0	0	0	0.3119	1	11135	11135		32.812	0	1				10151	575	6373	6402	10313	10313					-0.00652988949786959
ETRIGAEL	8	Unmodified	_ETRIGAEL_					0	0	0			REV__ENSG00000160703|ENST00000409109|NLRX1	REV__ENSG00000160703|ENST00000409109|NLRX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7428283691406	2	444.742899	887.471246	0.59163	0.00026312	-0.848	-0.00037714	-0.25637	-0.00011402	444.74245121445404	30.302	0.33138	30.302	30.127	30.458	0					12	8	2	0	0	0	0.5535	1	10919	10919		54.776	3.5836	1	203740	+		10152	15759	6374	6403	10314	10314					0.023009080007682314
ETRKEGSLAI	10	Unmodified	_ETRKEGSLAI_					0	0	0			REV__tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1	REV__tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3089599609375	2	552.306395	1102.59824	3.6739	0.0020291	0.96342	0.0005321	4.6373	0.0025612	552.3069752991165	41.396	0.33898	41.396	41.256	41.595	0					15	8	3	0	0	0	0.38194	1	16450	16450		58.23	7.0372	1	770350	+		10153	21823	6375	6404	10315	10315					0.05104209155092576
ETRPGPWPR	9	Unmodified	_ETRPGPWPR_					0	0	0		ENST00000551727.5_1_12:104531302-104531635:-|nuORF	ENST00000551727.5_1_12:104531302-104531635:-|nuORF	ENST00000551727.5_1_12:104531302-104531635:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2904663085938	2	548.28834	1094.56213	-1.5066	-0.00082604	0.64054	0.0003512	-0.86605	-0.00047484	548.2888008477917	33.55	0.30773	33.55	33.404	33.712	0					23	8	4	0	0	0	0.44593	1	11749	11749		37.812	5.8567	1	1296000			10154	10627	6376	6405	10316	10316					0.01862796768887165
ETRPSAAQL	9	Unmodified	_ETRPSAAQL_					0	0	0		ENSG00000072786|ENST00000176763|STK10;STK10|p.T526Pfs*15|3|0.11|ENSG00000072786|chr5:172090341-172090341|T/-|frameshift_variant;ENST00000517527.1_1_5:171532629-171533799:-|nuORF	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7588806152344	2	486.759081	971.503609	-0.69701	-0.00033927	0.54865	0.00026706	-0.14836	-7.2214E-05	486.75925780346864	31.519	0.15111	31.519	31.454	31.605	0					7	3	3	0	0	0	0.46194	1	11896	11896		36.447	2.2742	1	167290			10155	1501	6377	6406	10317	10317					0.01671695403740614
ETRQILDT	8	Unmodified	_ETRQILDT_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2591857910156	2	488.258914	974.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.179	1	42.179	41.679	42.679	0								0	0	0	1.7419	1	15993	15993		38.806	0.99462	1				10156	3315	6378	6407	10318	10318					0.015002756838953246
ETRQRGSR	8	Unmodified	_ETRQRGSR_					0	0	0		ENST00000528273.5_1_17:43509005-43510572:-|nuORF	ENST00000528273.5_1_17:43509005-43510572:-|nuORF	ENST00000528273.5_1_17:43509005-43510572:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2663879394531	2	495.265396	988.516239	2.8337	0.0014034	0.13468	6.6703E-05	2.9683	0.0014701	495.2654331767101	30.509	0.35472	30.509	30.408	30.763	0					19	7	3	0	0	0	0.49216	1	11291	11291		60.972	60.972	1	1975600			10157	10399	6379	6408	10319	10319					0.021521515866652408
ETRRALLR	8	Unmodified	_ETRRALLR_					0	0	0		ENST00000577425.5_1_17:79849605-79852370:+|nuORF	ENST00000577425.5_1_17:79849605-79852370:+|nuORF	ENST00000577425.5_1_17:79849605-79852370:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8099670410156	2	507.811982	1013.60941	-0.38235	-0.00019416	-3.2719	-0.0016615	-3.6542	-0.0018557	507.81028343589315	28.215	0.16249	28.215	28.112	28.275	0					7	3	3	0	0	0	0.64096	1	10326	10326		42.474	8.9589	1	130260			10158	10839	6380	6409	10320	10320					0.10315076039887572
ETRRRGLGSP	10	Unmodified	_ETRRRGLGSP_					0	0	0		ENST00000550376.5_1_12:108154376-108155011:-|nuORF	ENST00000550376.5_1_12:108154376-108155011:-|nuORF	ENST00000550376.5_1_12:108154376-108155011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8169555664062	2	564.815253	1127.61595	3.4709	0.0019604	-0.93377	-0.00052741	2.5371	0.001433	564.8146636278228	28.933	1.0078	28.933	28.478	29.485	0					65	20	6	0	0	0	0.24256	1	10459	10459		74.255	7.8258	1	17753000			10159	10616	6381	6410	10321	10321					0.05724969200605301
ETRWPESL	8	Unmodified	_ETRWPESL_					0	0	0		ENST00000396578.7_1_2:228029329-228029443:+|nuORF	ENST00000396578.7_1_2:228029329-228029443:+|nuORF	ENST00000396578.7_1_2:228029329-228029443:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2533264160156	2	509.253631	1016.49271	-0.1069	-5.4439E-05	-0.063156	-3.2163E-05	-0.17006	-8.6601E-05	509.2535498084746	30.824	0.32599	30.824	30.719	31.044	0					31	13	4	0	0	0	0.30437	1	9839	9839		82.305	5.4584	1	1245700			10160	9207	6382	6411	10322	10322					-0.014877069705221402
ETSHESVD	8	Unmodified	_ETSHESVD_					0	0	0		nc|ENSG00000148735|Q5SXH7-4|PLEKHS1;nc|ENSG00000148735|Q5SXH7-3|PLEKHS1;PLEKHS1|p.R353Tfs*17|1|0.24|ENSG00000148735|chr10:113777141-113777142|-/C|frameshift_variant;nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;nc|ENSG00000148735|Q5SXH7|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1	nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7867736816406	2	452.188154	902.361755	-0.075511	-3.4145E-05	0.25877	0.00011701	0.18326	8.2866E-05	452.1882480850575	25.047	0.14355	25.047	24.999	25.142	0					5	3	2	0	0	0	0.64096	1	7895	7895		42.474	5.446	1	101130			10161	4849	6383	6412	10323	10323					-0.09333142409218453
ETSKRELE	8	Unmodified	_ETSKRELE_					0	0	0		ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26	ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2562561035156	2	496.256371	990.498189	0.079684	3.9544E-05	-0.95734	-0.00047509	-0.87766	-0.00043554	496.2558906332997	27.991	0.16226	27.991	27.934	28.096	0					9	6	2	0	0	0	0.6088	1	8690	8690		45.952	0	1	77043			10162	156	6384	6413	10324	10324					0.0025597182127512497
ETSLDLLKQ	9	Unmodified	_ETSLDLLKQ_					0	0	0			REV__ENSG00000127080|ENST00000287996|IPPK	REV__ENSG00000127080|ENST00000287996|IPPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7926635742188	2	523.790047	1045.56554	3.4233	0.0017931	1.2413	0.00065018	4.6646	0.0024433	523.7908434655178	19.416	0.51538	19.416	19.309	19.825	0					26	10	4	0	0	0	0.034359	1	5984	5984		104.75	8.9314	1	10957000	+		10163	14480	6385	6414	10325	10325					0.04458002032242803
ETSLWQPP	8	Unmodified	_ETSLWQPP_					0	0	0			REV__SCNN1D|p.S19Lfs*90|1|0.29|ENSG00000162572|chr1:1284070-1284071|-/G|frameshift_variant	REV__SCNN1D|p.S19Lfs*90|1|0.29|ENSG00000162572|chr1:1284070-1284071|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7555236816406	2	479.23745	956.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.626	1	22.626	22.126	23.126	0								0	0	0	1.7419	1	7553	7553		45.952	12.436	1		+		10164	15821	6386	6415	10326	10326					-0.019624943735266243
ETSNDLPKF	9	Unmodified	_ETSNDLPKF_					0	0	0		ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7584228515625	2	525.758746	1049.50294	0.64746	0.00034041	0.11633	6.1163E-05	0.76379	0.00040157	525.7587250013692	19.439	0.57806	19.439	19.361	19.939	0					30	17	3	0	0	0	0.42902	1	5184	5184		39.253	10.103	1	415530			10165	3236	6387	6416	10327	10327					-0.01983144035943951
ETSPAPAPPPV	11	Unmodified	_ETSPAPAPPPV_					0	0	0			REV__ENSG00000186193|ENST00000409687|SAPCD2	REV__ENSG00000186193|ENST00000409687|SAPCD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.7780151367188	2	531.776939	1061.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.26	1	36.26	35.76	36.76	0								0	0	0	0.31508	1	12974	12974		40.778	10.46	1		+		10166	17072	6388	6417	10328	10328					0.011017328607522359
ETSPSLELL	9	Unmodified	_ETSPSLELL_					0	0	0			REV__SSC5D|p.A244Gfs*45|1|0.38|ENSG00000179954|chr19:55490908-55490909|-/G|frameshift_variant	REV__SSC5D|p.A244Gfs*45|1|0.38|ENSG00000179954|chr19:55490908-55490909|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2640686035156	2	494.763497	987.512442	-2.4634	-0.0012188	-2.8809	-0.0014254	-5.3443	-0.0026442	494.7618868409806	33.356	0.47531	33.356	33.057	33.533	0					32	14	4	0	0	0	0.22377	1	11732	11732		58.782	0.97068	1	239350	+		10167	16795	6389	6418	10329	10329					0.01818624249574441
ETSPVYVNQ	9	Unmodified	_ETSPVYVNQ_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.750732421875	2	518.750921	1035.48729	0.056205	2.9156E-05	0.13584	7.0468E-05	0.19205	9.9624E-05	518.7508874465517	19.207	1.6332	19.207	18.889	20.522	0					135	37	5	0	0	0	0.39215	1	5666	5666		42.396	1.618	1	29400000	+		10168	14163	6390	6419	10330	10330					-0.029034305530103666
ETSRMLLVA	9	Unmodified	_ETSRMLLVA_					0	0	0			REV__OR2T12|p.R232H|1|0.1|ENSG00000177201|chr1:248294884-248294884|C/T|missense_variant	REV__OR2T12|p.R232H|1|0.1|ENSG00000177201|chr1:248294884-248294884|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2834167480469	2	510.281334	1018.54812	1.1936	0.00060908	2.4736	0.0012622	3.6672	0.0018713	510.2826713271758	11.338	0.092565	11.338	11.288	11.381	0					9	3	3	0	0	0	0.43426	1	2292	2292		38.806	0.99462	1	322110	+		10169	16689	6391	6420	10331	10331					0.039583832255971174
ETSRVVFQL	9	Unmodified	_ETSRVVFQL_					0	0	0		ENST00000584516.5_1_17:73587014-73591049:+|nuORF	ENST00000584516.5_1_17:73587014-73591049:+|nuORF	ENST00000584516.5_1_17:73587014-73591049:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7990112304688	2	539.798206	1077.58186	3.4448	0.0018595	-2.3149	-0.0012496	1.1299	0.00060994	539.796980067901	37.778	0.54911	37.778	37.383	37.932	0					15	11	2	0	0	0	0.21263	1	14837	14837		60.118	5.3419	1	342980			10170	10890	6392	6421	10332	10332					0.0461712798901317
ETSVHLQY	8	Unmodified	_ETSVHLQY_					0	0	0			REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7402038574219	2	488.740357	975.46616	-1.25	-0.00061092	1.0141	0.00049564	-0.23586	-0.00011528	488.7405912125959	29.321	0.10294	29.321	29.28	29.383	0					6	4	2	0	0	0	0.7126	1	9547	9547		31.955	0	1	55290	+		10171	21028	6393	6422	10333	10333					-0.02255395861868692
ETSVRDITL	9	Unmodified	_ETSVRDITL_					0	0	0			REV__ENST00000438671.3_1_3:45731844-45750997:+|nuORF	REV__ENST00000438671.3_1_3:45731844-45750997:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2798461914062	2	517.279846	1032.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.27	1	22.27	21.77	22.77	0								0	0	0	0.17378	1	7513	7513		54.776	5.3348	1		+		10172	17547	6394	6423	10334	10334					0.030168313724288964
ETSWSAVL	8	Unmodified	_ETSWSAVL_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;ROBO2|p.K1290Nfs*20|1|0.44|ENSG00000185008|chr3:77634974-77634974|A/-|frameshift_variant;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2;ROBO2|p.P740Tfs*14|1|0.27|ENSG00000185008|chr3:77577498-77577499|-/C|frameshift_variant;ROBO2|p.G821Wfs*7|1|0.37|ENSG00000185008|chr3:77580078-77580079|-/T|frameshift_variant	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.72393798828125	2	446.724175	891.433798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.183	1	32.183	31.683	32.683	0								0	0	0	1.7419	1	11791	11791		26.796	0	1				10173	7053	6395	6424	10335	10335					-0.016261832648524432
ETTAGILTLT	10	Unmodified	_ETTAGILTLT_					0	0	0			REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.28521728515625	2	510.284597	1018.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.755	1	40.755	40.255	41.255	0								0	0	0	0.40862	1	15535	15535		27.882	0	1		+		10174	22032	6396	6425	10336	10336					0.04610599657939929
ETTHVQIQ	8	Unmodified	_ETTHVQIQ_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2455749511719	2	478.245806	954.47706	-0.28327	-0.00013547	-0.29923	-0.0001431	-0.5825	-0.00027858	478.24569521861974	29.478	0.42139	29.478	29.313	29.734	0					23	10	4	0	0	0	0.63077	1	10522	10522		44.117	4.864	1	1024800	+		10175	12755	6397	6426	10337	10337					-0.001999934875584586
ETTIKFAP	8	Unmodified	_ETTIKFAP_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7422180175781	2	453.750193	905.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.98	1	23.98	23.48	24.48	0								0	0	0	1.7419	1	8334	8334		40.573	1.7665	1				10176	1344	6398	6427	10338	10338					0.02930980148892104
ETTISTEKL	9	Unmodified	_ETTISTEKL_					0	0	0		ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant;ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ZAN|p.G2740Efs*38|1|0.09|ENSG00000146839|chr7:100795285-100795285|G/-|frameshift_variant;ZAN|p.E2695Rfs*83|1|0.15|ENSG00000146839|chr7:100794212-100794212|G/-|frameshift_variant;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN	ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant	ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.27435302734375	2	511.274229	1020.53391	0.40919	0.00020921	-0.3125	-0.00015978	0.096682	4.9431E-05	511.27401918033297	27.397	0.2191	27.397	27.27	27.49	0					9	4	3	0	0	0	0.44593	1	9948	9948		37.812	2.1932	1	134120			10177	4750	6399	6428	10339	10339					0.0244600927828742
ETTLAWLLI	9	Unmodified	_ETTLAWLLI_					0	0	0			REV__ENSG00000188211|ENST00000338965|NCR3LG1	REV__ENSG00000188211|ENST00000338965|NCR3LG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3111572265625	2	530.307875	1058.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.999	1	12.999	12.499	13.499	0								0	0	0	0.3693	1	2910	2910		7.6903	0	1		+		10178	17160	6400	6429	10340	10340					0.07424084279909948
ETTLIGKL	8	Unmodified	_ETTLIGKL_					0	0	0			REV__ENSG00000198146|ENST00000356321|ZNF770	REV__ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.76556396484375	2	437.765843	873.517133	-0.56653	-0.00024801	0.21352	9.3473E-05	-0.35301	-0.00015453	437.7658474296143	35.288	0.27066	35.288	35.179	35.449	0					8	5	2	0	0	0	0.29286	1	13599	13599		84.916	5.4645	1	361250	+		10179	17384	6401	6430	10341	10341					0.0753155318300287
ETTNAIKIQ	9	Unmodified	_ETTNAIKIQ_					0	0	0			REV__PCBP3|p.A332T|1|0.14|ENSG00000183570|chr21:45940114-45940114|G/A|missense_variant	REV__PCBP3|p.A332T|1|0.14|ENSG00000183570|chr21:45940114-45940114|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2823181152344	2	509.282389	1016.55022	3.0101	0.001533	-2.3524	-0.001198	0.65768	0.00033495	509.28084612846106	34.472	0.45608	34.472	34.261	34.717	0					25	9	4	0	0	0	0.19605	1	13227	13227		62.107	0	1	549620	+		10180	21339	6402	6431	10342	10342					0.04261135235026359
ETTPILLPR	9	Unmodified	_ETTPILLPR_					0	0	0			REV__ENST00000322048.11_1_16:4847335-4847443:-|nuORF	REV__ENST00000322048.11_1_16:4847335-4847443:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3099975585938	2	520.310949	1038.60735	1.6801	0.00087416	-2.0881	-0.0010865	-0.40803	-0.0002123	520.309918906733	37.39	1.2156	37.39	36.93	38.145	0					60	38	2	0	0	0	0.41113	1	14626	14626		40.778	5.1599	1	323820	+		10181	18330	6403	6432	10343	10343					0.08958602511415847
ETTQLERL	8	Unmodified	_ETTQLERL_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.26641845703125	2	495.266739	988.518924	-0.76027	-0.00037654	-0.72132	-0.00035725	-1.4816	-0.00073378	495.26651091492056	30.538	0.293	30.538	30.432	30.725	0					11	6	3	0	0	0	0.58597	1	11436	11436		51.335	0	1	375920	+		10182	17269	6404	6433	10344	10344					0.024205622009503713
ETTQPNIRH	9	Unmodified	_ETTQPNIRH_					0	0	0			REV__nc|ENSG00000138231|Q9UK59-2|DBR1	REV__nc|ENSG00000138231|Q9UK59-2|DBR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2828979492188	2	548.280712	1094.54687	3.815	0.0020917	-0.44317	-0.00024298	3.3718	0.0018487	548.2803915691895	38.183	0.51923	38.183	37.961	38.48	0					25	11	4	0	0	0	0.24095	1	14987	14987		56.721	0.28726	1	510270	+		10183	14965	6405	6434	10345	10345					0.003378851810339256
ETTSSVTPL	9	Unmodified	_ETTSSVTPL_					0	0	0			REV__ENST00000483977.5_1_21:35497749-35514781:+|nuORF	REV__ENST00000483977.5_1_21:35497749-35514781:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7404479980469	2	467.740022	933.465492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.779	1	18.779	18.279	19.279	0								0	0	0	0.1836	1	4731	4731		53.351	1.0523	1		+		10184	19630	6406	6435	10346	10346					-0.003902353015632798
ETTTYRALI	9	Unmodified	_ETTTYRALI_					0	0	0			REV__ENSG00000103544|ENST00000417362|VPS35L	REV__ENSG00000103544|ENST00000417362|VPS35L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2908935546875	2	534.290214	1066.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.605	1	41.605	41.105	42.105	0								0	0	0	0.23445	1	16560	16560		45.972	5.1941	1		+		10185	13687	6407	6436	10347	10347					0.03525421752101465
ETTVPPPQLH	10	Unmodified	_ETTVPPPQLH_					0	0	0			REV__ENST00000480730.5_1_6:33272047-33272452:-|nuORF	REV__ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.7962036132812	2	559.795663	1117.57677	-0.82775	-0.00046337	2.4117	0.00135	1.5839	0.00088668	559.7971224083561	34.884	0.23524	34.884	34.789	35.025	0					18	8	3	0	0	0	0.49411	1	12373	12373		45.972	17.891	1	219770	+		10186	17646	6408	6437	10348	10348					0.022688241263722375
ETTVRSVQL	9	Unmodified	_ETTVRSVQL_					0	0	0		LAMA3|p.P420Lfs*49|1|0.38|ENSG00000053747|chr18:23773570-23773570|C/-|frameshift_variant	LAMA3|p.P420Lfs*49|1|0.38|ENSG00000053747|chr18:23773570-23773570|C/-|frameshift_variant	LAMA3|p.P420Lfs*49|1|0.38|ENSG00000053747|chr18:23773570-23773570|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.790771484375	2	516.787838	1031.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.305	1	36.305	35.805	36.805	0								0	0	0	0.3368	1	12992	12992		27.882	0.83493	1				10187	11309	6409	6438	10349	10349					0.046605376093339146
ETTVSRPVLS	10	Unmodified	_ETTVSRPVLS_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;ENST00000471546.5_1_2:197504460-197531652:+|nuORF;CCDC150|p.E447Sfs*3|1|0.16|ENSG00000144395|chr2:196676625-196676625|A/-|frameshift_variant;CCDC150|p.R59Efs*10|1|0.27|ENSG00000144395|chr2:196646498-196646498|A/-|frameshift_variant;ENST00000498512.5_1_2:197504460-197537114:+|nuORF	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.8013916015625	2	544.800946	1087.58734	0.32691	0.0001781	1.1174	0.00060878	1.4443	0.00078688	544.8017485504569	35.754	0.22934	35.754	35.624	35.853	0					10	6	2	0	0	0	0.48255	1	13880	13880		60.118	25.946	1	121990			10188	4613	6410	6439	10350	10350					0.04704806780819126
ETVDIKKI	8	Unmodified	_ETVDIKKI_					0	0	0			REV__tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	REV__tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2845458984375	2	473.2844	944.554247	-0.31387	-0.00014855	0.25186	0.0001192	-0.062002	-2.9345E-05	473.2842338522159	37.179	0.081013	37.179	37.101	37.182	0					8	4	2	0	0	0	0.68432	1	12173	12173		35.618	0	1	57522	+		10189	22103	6411	6440	10351	10351					0.079752247287729
ETVFFLSF	8	Unmodified	_ETVFFLSF_					0	0	0		ENST00000216297.6_1_14:21820582-21820828:-|nuORF	ENST00000216297.6_1_14:21820582-21820828:-|nuORF	ENST00000216297.6_1_14:21820582-21820828:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2553405761719	2	495.252569	988.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.287	1	40.287	39.787	40.787	0								0	0	0	1.7419	1	15872	15872		50.025	14.824	1				10190	8163	6412	6441	10352	10352					-0.004121357083363364
ETVGGIALSI	10	Unmodified	_ETVGGIALSI_					0	0	0			REV__THOC1|p.N119Mfs*26|1|0.36|ENSG00000079134|chr18:260205-260205|T/-|frameshift_variant	REV__THOC1|p.N119Mfs*26|1|0.36|ENSG00000079134|chr18:260205-260205|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2734069824219	2	480.274032	958.533512	0.050978	2.4484E-05	-0.11448	-5.4984E-05	-0.063505	-3.05E-05	480.2735045372259	33.793	0.18906	33.793	33.689	33.878	0					7	5	2	0	0	0	0.49411	1	11889	11889		45.972	2.3462	1	49252	+		10191	13277	6413	6442	10353	10353					0.05258634349092972
ETVGLKIL	8	Unmodified	_ETVGLKIL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.77587890625	2	436.776211	871.537869	-0.64364	-0.00028113	0.26239	0.0001146	-0.38125	-0.00016652	436.776271500549	37.159	0.19519	37.159	37.095	37.29	0					16	10	2	0	0	0	0.39542	1	13301	13301		71.378	5.5747	1	100310			10192	11514	6414	6443	10354	10354					0.09696143562666748
ETVINVLR	8	Unmodified	_ETVINVLR_					0	0	0			REV__nc|ENSG00000155100|Q8N6M0-2|OTUD6B	REV__nc|ENSG00000155100|Q8N6M0-2|OTUD6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2823791503906	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.239	1	30.239	29.739	30.739	0								0	0	0	1.7419	1	10884	10884		54.776	2.4771	1		+		10193	15588	6415	6444	10355	10355					0.07625760305847962
ETVKDLGKALG	11	Unmodified	_ETVKDLGKALG_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.8229370117188	2	565.824421	1129.63429	1.7055	0.000965	-2.0477	-0.0011586	-0.34221	-0.00019363	565.8236051186376	16.788	1.3941	16.788	16.681	18.076	0					74	28	4	0	0	0	0.045275	1	4897	4897		101.25	21.54	1	69738000			10194	815	6416	6445	10356	10356					0.07465666331927423
ETVLELEVE	9	Unmodified	_ETVLELEVE_					0	0	0		DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant;DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant;ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant;ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.1854553222656	3	354.185134	1059.53357	1.4425	0.00051091	-0.52055	-0.00018437	0.92194	0.00032654	354.18492117155296	22.952	0.31758	22.952	22.845	23.162	0					11	6	2	0	0	0	0.56424	1	7856	7856		25.574	25.574	1	582430			10195	797;1015	6417	6446	10357	10357					0.006185895584621903
ETVLVQLK	8	Unmodified	_ETVLVQLK_					0	0	0			REV__ENST00000266746.10_1_12:100561203-100566904:-|nuORF	REV__ENST00000266746.10_1_12:100561203-100566904:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.286865234375	2	465.286943	928.559333	-0.49045	-0.0002282	-0.16356	-7.61E-05	-0.65401	-0.0003043	465.28691513337526	34.253	0.1601	34.253	34.15	34.31	0					5	3	2	0	0	0	0.49216	1	13122	13122		60.972	9.6365	1	114680	+		10196	18083	6418	6447	10358	10358					0.09219528591381732
ETVQVLQI	8	Unmodified	_ETVQVLQI_					0	0	0		SPEF1|p.M205I|1|0.36|ENSG00000101222|chr20:3778308-3778308|C/A|missense_variant	SPEF1|p.M205I|1|0.36|ENSG00000101222|chr20:3778308-3778308|C/A|missense_variant	SPEF1|p.M205I|1|0.36|ENSG00000101222|chr20:3778308-3778308|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2685546875	2	465.26875	928.522947	0.69331	0.00032258	-0.55862	-0.00025991	0.13469	6.2668E-05	465.2685536826873	34.286	0.45378	34.286	33.989	34.443	0					17	9	2	0	0	0	0.53424	1	13140	13140		56.721	5.3856	1	629290			10197	22484	6419	6448	10359	10359					0.05582651694669494
ETVTKILR	8	Unmodified	_ETVTKILR_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A;FAM186A|p.K741Rfs*10|1|0.13|ENSG00000185958|chr12:50354610-50354610|T/-|frameshift_variant;FAM186A|p.K754Rfs*2|2|0.18|ENSG00000185958|chr12:50354571-50354571|T/-|frameshift_variant;FAM186A|p.M1001Nfs*25|1|0.32|ENSG00000185958|chr12:50353830-50353831|-/T|frameshift_variant	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.297607421875	2	480.297842	958.581131	0.67464	0.00032403	-2.8781	-0.0013824	-2.2035	-0.0010583	480.29566374142894	34.416	0.36331	34.416	34.336	34.699	0					17	9	3	0	0	0	0.32597	1	13275	13275		79.713	5.4575	1	285990			10198	7117	6420	6449	10360	10360					0.10018333339951369
ETVVLRDRLPS	11	Unmodified	_ETVVLRDRLPS_					0	0	0			REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	642.8671875	2	642.867151	1283.71975	0.58775	0.00037785	-0.42178	-0.00027115	0.16597	0.0001067	642.8668460454404	24.65	0.46521	24.65	24.437	24.902	0					32	11	4	0	0	0	0.35529	1	8297	8297		56.434	1.7114	1	1332700	+		10199	17026	6421	6450	10361	10361					0.0892383151760896
ETWALQVKL	9	Unmodified	_ETWALQVKL_					0	0	0		ENST00000052569.10_2_6:117884475-117884517:-|nuORF	ENST00000052569.10_2_6:117884475-117884517:-|nuORF	ENST00000052569.10_2_6:117884475-117884517:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.2098083496094	3	363.209725	1086.60735	0.48644	0.00017668	-0.4873	-0.00017699	-0.00085312	-3.0986E-07	363.2096143468388	37.623	0.26537	37.623	37.51	37.776	0					17	8	3	0	0	0	0.45358	1	14729	14729		36.447	0	1	201510			10200	8141	6422	6451	10362	10362					0.06750602511442594
ETWKKNRR	8	Unmodified	_ETWKKNRR_					0	0	0		ENST00000536093.5_3_12:27468169-27475385:+|nuORF;nc|ENSG00000211455|Q9Y2H1-2|STK38L;STK38L|p.F383Lfs*9|1|0.1|ENSG00000211455|chr12:27319392-27319392|T/-|frameshift_variant;ENSG00000211455|ENST00000389032|STK38L	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.8145751953125	2	559.314889	1116.61522	0.12288	6.8728E-05	-1.9281	-0.0010784	-1.8052	-0.0010097	559.8149366153478	23.249	0.16784	23.249	23.179	23.346	0					7	5	2	0	0	0	0.58597	1	6967	6967		40.573	0	1	97302			10201	7774	6423	6452	10363	10363					0.06158174551569573
ETWRVALVL	9	Unmodified	_ETWRVALVL_					0	0	0			REV__ENSG00000186188|ENST00000371481|FFAR4	REV__ENSG00000186188|ENST00000371481|FFAR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.8816833496094	3	362.88172	1085.62333	-0.94867	-0.00034425	1.3825	0.00050168	0.43381	0.00015742	362.88215308131055	31.752	0.16597	31.752	31.657	31.823	0					12	6	2	0	0	0	0.55282	1	10538	10538		42.396	42.396	1	79169	+		10202	17070	6424	6453	10364	10364					0.08394308748324875
ETWSLTPK	8	Unmodified	_ETWSLTPK_					0	0	0		tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.250732421875	2	481.2531	960.491647	-0.10702	-5.1502E-05	-3.634	-0.0017489	-3.741	-0.0018004	481.2506539313492	18.769	0.096462	18.769	18.711	18.807	0					4	2	2	0	0	0	0.69548	1	5835	5835		34.173	0	1	130530			10203	22650	6425	6454	10365	10365					0.009820786605587273
ETYGLIGKL	9	Unmodified	_ETYGLIGKL_					0	0	0			REV__ENST00000452570.1_1_X:39646388-39646742:-|nuORF	REV__ENST00000452570.1_1_X:39646388-39646742:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2841796875	2	497.2844	992.554247	-0.028941	-1.4392E-05	0.053643	2.6676E-05	0.024702	1.2284E-05	497.2841904075133	33.457	0.10643	33.457	33.402	33.508	0					4	2	2	0	0	0	0.33044	1	12816	12816		47.657	0	1	70620	+		10204	13972	6426	6455	10366	10366					0.057672247287769096
ETYNKRHLK	9	Unmodified	_ETYNKRHLK_					0	0	0		ENST00000592124.1_1_19:34756504-34790780:+|nuORF;ENST00000299505.6_1_19:34745491-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.8273315429688	2	594.827829	1187.64111	0.13131	7.8105E-05	-0.33005	-0.00019632	-0.19874	-0.00011822	594.8278798589324	13.894	0.11583	13.894	13.844	13.96	0					12	5	3	0	0	0	0.36135	1	2779	2779		30.318	18.111	1	170600			10205	8477	6427	6456	10367	10367					0.05479024003170707
ETYNKRHLK	9	Unmodified	_ETYNKRHLK_					0	0	0		ENST00000592124.1_1_19:34756504-34790780:+|nuORF;ENST00000299505.6_1_19:34745491-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.8876037597656	3	396.887645	1187.64111	-0.27921	-0.00011081	0.33428	0.00013267	0.055069	2.1856E-05	396.88777814560075	14.22	0.73098	14.22	14.132	14.863	0					34	18	4	0	0	0	0.4966	1	3406	3406		32.812	4.2357	1	1881100			10206	8477	6427	6456	10368	10368					0.05479024003170707
ETYNKRHLK	9	Unmodified	_ETYNKRHLK_					0	0	0		ENST00000592124.1_1_19:34756504-34790780:+|nuORF;ENST00000299505.6_1_19:34745491-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.8279418945312	2	594.827829	1187.64111	0.21625	0.00012863	0.23119	0.00013752	0.44745	0.00026615	594.8279359897833	14.22	0.28551	14.22	14.132	14.417	0					22	7	5	0	0	0	0.0097668	1	3407	3407		125.81	18.807	1	1509200			10207	8477	6427	6456	10369	10369					0.05479024003170707
ETYNKRHLK	9	Unmodified	_ETYNKRHLK_					0	0	0		ENST00000592124.1_1_19:34756504-34790780:+|nuORF;ENST00000299505.6_1_19:34745491-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.8280029296875	2	594.827829	1187.64111	1.4334	0.00085265	-0.89538	-0.0005326	0.53805	0.00032005	594.8272752408035	14.124	0.35229	14.124	14.024	14.376	0					15	7	4	0	0	0	0.037712	1	3606	3606		75.043	25.602	1	1777800			10208	8477	6427	6456	10370	10370					0.05479024003170707
ETYRVEKAI	9	Unmodified	_ETYRVEKAI_					0	0	0		tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8040771484375	2	554.803488	1107.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.856	1	39.856	39.356	40.356	0								0	0	0	0.17378	1	15782	15782		54.776	3.4409	1				10209	22774	6428	6457	10371	10371					0.0429311064342528
EVAASLLCSVL	11	Unmodified	_EVAASLLCSVL_					0	0	0		ENST00000337774.9_2_3:187003724-187009559:-|nuORF	ENST00000337774.9_2_3:187003724-187009559:-|nuORF	ENST00000337774.9_2_3:187003724-187009559:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.803466796875	2	552.8021	1103.58965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.646	1	43.646	43.146	44.146	0								0	0	0	0.36092	1	17055	17055		19.997	0	1				10210	8709	6429	6458	10372	10372					0.04199519194253298
EVADELVA	8	Unmodified	_EVADELVA_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENSG00000198176|ENST00000375370|TFDP1;ENST00000453595.1_1_X:36980271-36981156:-|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	423.2159118652344	2	423.216183	844.417813	-1.162	-0.00049179	0.7949	0.00033641	-0.36713	-0.00015538	423.21644425958124	31.35	0.28169	31.35	31.248	31.529	0					18	11	2	0	0	0	0.36926	1	10360	10360		74.517	8.6191	1	305690			10211	10569	6430	6459	10373	10373					-0.010618895017728391
EVAKVIVSM	9	Unmodified	_EVAKVIVSM_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.28106689453125	2	488.280803	974.547053	-0.079119	-3.8633E-05	-4.3112	-0.0021051	-4.3903	-0.0021437	488.2806833745669	36.168	0.34419	36.168	36.022	36.367	0					23	17	2	0	0	0	0.0406	1	11846	11846		98.629	19.178	1	98971			10212	11515	6431	6460	10374	10374					0.0587616885669604
EVAKVIVSM	9	Unmodified	_EVAKVIVSM_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7830810546875	2	488.280803	974.547053	3.5085	0.0017131	-3.6449	-0.0017797	-0.13633	-6.6569E-05	488.27927968287344	36.158	0.17177	36.158	36.081	36.252	0					12	7	3	0	0	0	0.025517	1	12247	12247		113.41	28.496	1	98219			10213	11515	6431	6460	10375	10375					0.0587616885669604
EVAKVIVSM	9	Unmodified	_EVAKVIVSM_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2804870605469	2	488.280803	974.547053	-0.078981	-3.8565E-05	-2.8276	-0.0013807	-2.9066	-0.0014192	488.2805610716538	36.375	0.37167	36.375	36.292	36.663	0					32	10	4	0	0	0	0.014688	1	14147	14147		131.03	26.285	1	577640			10214	11515	6431	6460	10376	10376					0.0587616885669604
EVAKVIVSM	9	Unmodified	_EVAKVIVSM_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2810974121094	2	488.280803	974.547053	0.49376	0.00024109	-0.94043	-0.00045919	-0.44667	-0.0002181	488.28077357552536	36.174	0.26072	36.174	36.047	36.308	0					12	9	2	0	0	0	0.023928	1	12918	12918		115.49	10.747	1	140530			10215	11515	6431	6460	10377	10377					0.0587616885669604
EVAKVIVSM	9	Oxidation (M)	_EVAKVIVSM(Oxidation (M))_		EVAKVIVSM(1)		EVAKVIVSM(110)	0	0	1		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2782287597656	2	496.27826	990.541968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.803	1	26.803	26.303	27.303	0								0	0	0	0.0124	1	9291	9291		107.01	22.092	1				10216	11515	6431	6461	10378	10378		447			0.04631864994087209
EVAKVIVSM	9	Oxidation (M)	_EVAKVIVSM(Oxidation (M))_		EVAKVIVSM(1)		EVAKVIVSM(100)	0	0	1		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2783508300781	2	496.27826	990.541968	-0.035248	-1.7493E-05	0.10722	5.3213E-05	0.071976	3.572E-05	496.2785884626346	26.777	0.26708	26.777	26.677	26.944	0					7	5	2	0	0	0	0.034359	1	9641	9641		104.75	13.97	1	144900			10217	11515	6431	6461	10379	10379		447			0.04631864994087209
EVAPPEYHR	9	Unmodified	_EVAPPEYHR_					0	0	0		ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1	ENSG00000185787|ENST00000426013|MORF4L1	ENSG00000185787|ENST00000426013|MORF4L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.271240234375	2	549.272355	1096.53016	-0.31102	-0.00017083	-0.17746	-9.7475E-05	-0.48848	-0.00026831	549.2725101238103	18.091	0.20066	18.091	17.978	18.179	0					9	6	2	0	0	0	0.61124	1	4645	4645		16.473	0	1	88964			10218	7105	6432	6462	10380	10380					-0.014246157049228714
EVARGPKL	8	Unmodified	_EVARGPKL_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.26361083984375	2	435.263802	868.513051	0.6739	0.00029332	-1.4156	-0.00061616	-0.74171	-0.00032284	435.2632696189072	31.98	0.33181	31.98	31.779	32.111	0					14	8	2	0	0	0	0.64096	1	11708	11708		42.474	1.9018	1	203410	+		10219	13088	6433	6463	10381	10381					0.07353508479945958
EVATLKLKL	9	Unmodified	_EVATLKLKL_					0	0	0			REV__PPFIBP1|p.R282Kfs*16|1|0.05|ENSG00000110841|chr12:27656665-27656666|-/A|frameshift_variant	REV__PPFIBP1|p.R282Kfs*16|1|0.05|ENSG00000110841|chr12:27656665-27656666|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.8310241699219	2	507.831517	1013.64848	-0.093364	-4.7413E-05	-0.56537	-0.00028711	-0.65873	-0.00033452	507.831201440014	37.938	0.074165	37.938	37.908	37.982	0					6	4	2	0	0	0	0.53083	1	12400	12400		29.15	0	1	36123	+		10220	13947	6434	6464	10382	10382					0.1422036355088494
EVATVSSPIN	10	Unmodified	_EVATVSSPIN_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7676086425781	2	508.766571	1015.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.634	1	18.634	18.134	19.134	0								0	0	0	0.39665	1	4667	4667		31.53	0	1		+		10221	12057	6435	6465	10383	10383					0.011451424810843491
EVAVKAARH	9	Unmodified	_EVAVKAARH_					0	0	0		MAP3K9|p.Q618Sfs*4|1|0.14|ENSG00000006432|chr14:70736023-70736024|-/G|frameshift_variant;MAP3K9|p.S907Rfs*21|1|0.24|ENSG00000006432|chr14:70732651-70732651|G/-|frameshift_variant;MAP3K9|p.P970Qfs*74|1|0.11|ENSG00000006432|chr14:70730786-70730786|G/-|frameshift_variant;ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	MAP3K9|p.Q618Sfs*4|1|0.14|ENSG00000006432|chr14:70736023-70736024|-/G|frameshift_variant	MAP3K9|p.Q618Sfs*4|1|0.14|ENSG00000006432|chr14:70736023-70736024|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.78704833984375	2	490.785433	979.556313	2.6764	0.0013135	0.84387	0.00041416	3.5203	0.0017277	490.78594137588726	45.647	0.45123	45.647	45.468	45.919	0					33	18	3	0	0	0	0.5741	1	18256	18256		17.365	8.5426	1	245640			10222	977	6436	6466	10384	10384					0.06571698257221215
EVCIHPDG	8	Unmodified	_EVCIHPDG_					0	0	0		nc|ENSG00000213619|O75489-2|NDUFS3;ENSG00000213619|ENST00000263774|NDUFS3;ENST00000533507.5_1_11:47602194-47606030:+|nuORF	nc|ENSG00000213619|O75489-2|NDUFS3	nc|ENSG00000213619|O75489-2|NDUFS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.1950988769531	2	435.194728	868.374903	0.35502	0.0001545	0.56618	0.0002464	0.92121	0.0004009	435.19515809804346	31.597	0.2473	31.597	31.454	31.702	0					9	5	2	0	0	0	0.74117	1	11916	11916		28.254	0	1	157960			10223	7793	6437	6467	10385	10385					-0.06454982830825884
EVCRRYLW	8	Unmodified	_EVCRRYLW_					0	0	0		ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF;ENSG00000138646|ENST00000264350|HERC5	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7866821289062	2	562.787118	1123.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.957	1	32.957	32.457	33.457	0								0	0	0	1.7419	1	11518	11518		30.504	1.3336	1				10224	4276	6438	6468	10386	10386					0.0028462503958053276
EVDKQIFPE	9	Unmodified	_EVDKQIFPE_					0	0	0			REV__APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant;REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.7808227539062	2	552.782222	1103.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.843	1	32.843	32.343	33.343	0								0	0	0	0.28996	1	10644	10644		37.159	1.5408	1		+		10225	14775;12183	6439	6469	10387	10387					0.0022571551519376953
EVDPDTKEM	9	Unmodified	_EVDPDTKEM_					0	0	0		ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2345581054688	2	532.234247	1062.45394	0.35819	0.00019064	-0.47052	-0.00025043	-0.11234	-5.979E-05	532.2339825356014	23.888	0.1112	23.888	23.82	23.931	0					7	4	2	0	0	0	0.21263	1	6970	6970		60.118	17.644	1	82215			10226	6920	6440	6470	10388	10388					-0.0747880038720723
EVDPDTKEM	9	Unmodified	_EVDPDTKEM_					0	0	0		ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2343139648438	2	532.234247	1062.45394	0.12327	6.5611E-05	0.51617	0.00027473	0.63945	0.00034034	532.2344086684241	24.169	0.18617	24.169	24.079	24.265	0					8	4	2	0	0	0	0.037924	1	8112	8112		101.25	26.209	1	486000			10227	6920	6440	6470	10389	10389					-0.0747880038720723
EVDPDTKEM	9	Unmodified	_EVDPDTKEM_					0	0	0		ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2346801757812	2	532.234247	1062.45394	-0.27315	-0.00014538	0.89349	0.00047554	0.62034	0.00033017	532.2349313510912	23.891	0.13964	23.891	23.827	23.967	0					8	5	2	0	0	0	0.078509	1	7236	7236		85.161	18.732	1	143470			10228	6920	6440	6470	10390	10390					-0.0747880038720723
EVDPDTKEM	9	Unmodified	_EVDPDTKEM_					0	0	0		ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2345581054688	2	532.234247	1062.45394	1.716	0.00091332	-1.6262	-0.00086553	0.089806	4.7798E-05	532.2336751671237	24.121	0.21852	24.121	23.995	24.213	0					13	4	4	0	0	0	0.0071053	1	8407	8407		148.99	30.244	1	634920			10229	6920	6440	6470	10391	10391					-0.0747880038720723
EVDPDTKEM	9	Unmodified	_EVDPDTKEM_					0	0	0		ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2352905273438	2	532.234247	1062.45394	1.1583	0.00061647	1.2275	0.00065333	2.3858	0.0012698	532.2349439461129	23.939	0.20286	23.939	23.844	24.047	0					8	5	2	0	0	0	0.098791	1	7391	7391		79.713	20.931	1	73974			10230	6920	6440	6470	10392	10392					-0.0747880038720723
EVDPDTKEM	9	Unmodified	_EVDPDTKEM_					0	0	0		ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000461663.1_1_5:116052154-116052343:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2347412109375	2	532.234247	1062.45394	1.7381	0.00092506	-1.3096	-0.00069699	0.4285	0.00022806	532.2339080266454	24.095	0.26645	24.095	24.012	24.278	0					11	5	4	0	0	0	0.01873	1	8265	8265		124.08	30.885	1	507610			10231	6920	6440	6470	10393	10393					-0.0747880038720723
EVDTLTLSQ	9	Unmodified	_EVDTLTLSQ_					0	0	0			REV__CON__P02666	REV__CON__P02666	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2582092285156	2	503.258579	1004.50261	0.62135	0.0003127	-0.38685	-0.00019469	0.2345	0.00011801	503.2583722441229	21.588	0.23722	21.588	21.444	21.682	0					8	5	2	0	0	0	0.30841	1	6873	6873		49.536	8.7579	1	83134	+	+	10232	12587	6441	6471	10394	10394					0.0005343624420675042
EVDVGVVQHC	10	Unmodified	_EVDVGVVQHC_					0	0	0			REV__ENSG00000187609|ENST00000340951|EXD3	REV__ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7603149414062	2	542.758223	1083.50189	0.62123	0.00033718	4.3819	0.0023783	5.0031	0.0027155	542.7608634151986	40.663	0.40976	40.663	40.55	40.959	0					13	7	2	0	0	0	0.59255	1	16159	16159		30.318	0	1	63940	+		10233	17126	6442	6472	10395	10395					-0.03651681676501539
EVDYLKYY	8	Unmodified	_EVDYLKYY_					0	0	0			REV__SCYL2|p.D146Y|1|0.16|ENSG00000136021|chr12:100298131-100298131|G/T|missense_variant	REV__SCYL2|p.D146Y|1|0.16|ENSG00000136021|chr12:100298131-100298131|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.765869140625	2	546.76604	1091.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.745	1	36.745	36.245	37.245	0								0	0	0	1.7419	1	13882	13882		31.955	1.4512	1		+		10234	21498	6443	6473	10396	10396					-0.024570718878067055
EVEAWLGEQ	9	Unmodified	_EVEAWLGEQ_					0	0	0		nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;ENST00000596900.5_1_19:41036434-41060733:+|nuORF;nc|ENSG00000160460|Q9H254-5|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7496948242188	2	530.750921	1059.48729	1.6662	0.00088434	-4.1015	-0.0021769	-2.4353	-0.0012925	530.7487292872443	28.45	0.76208	28.45	27.846	28.608	0					29	15	4	0	0	0	0.098791	1	10298	10298		79.713	2.395	1	675500			10235	5367	6444	6474	10397	10397					-0.040074305529969934
EVEKSLVLAEK	11	Unmodified	_EVEKSLVLAEK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.5750427246094	3	415.574732	1243.70237	0.99153	0.00041205	-0.20206	-8.3972E-05	0.78946	0.00032808	415.57467670182007	24.402	0.6626	24.402	24.294	24.957	0					37	13	5	0	0	0	0.20322	1	8549	8549		73.9	0	1	2813100			10236	2718	6445	6475	10398	10398					0.09026491191934838
EVEKSPRP	8	Unmodified	_EVEKSPRP_					0	0	0			REV__ENSG00000164294|ENST00000503787|GPX8	REV__ENSG00000164294|ENST00000503787|GPX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2566223144531	2	471.256174	940.497795	-0.18768	-8.8447E-05	-0.70914	-0.00033418	-0.89682	-0.00042263	471.2561370202608	26.732	0.60133	26.732	26.478	27.079	0					28	14	3	0	0	0	0.66372	1	8782	8782		38.806	0	1	198940	+		10237	15978	6446	6476	10399	10399					0.025165968920987325
EVEPGVHLGR	10	Unmodified	_EVEPGVHLGR_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A	nc|ENSG00000143398|Q99755-4|PIP5K1A	nc|ENSG00000143398|Q99755-4|PIP5K1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.795166015625	2	546.793455	1091.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.437	1	33.437	32.937	33.937	0								0	0	0	0.4201	1	12798	12798		15.642	1.5047	1				10238	4552	6447	6477	10400	10400					0.030233597034794002
EVEQEHLL	8	Unmodified	_EVEQEHLL_					0	0	0			REV__ENSG00000120370|ENST00000367763|GORAB	REV__ENSG00000120370|ENST00000367763|GORAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7528076171875	2	498.753464	995.492375	0.84127	0.00041959	-1.6771	-0.00083647	-0.83585	-0.00041688	498.75258199731763	28.573	0.41289	28.573	28.465	28.878	0					18	8	3	0	0	0	0.3961	1	10494	10494		71.296	0.47949	1	668500	+		10239	14280	6448	6478	10401	10401					-0.0055512669038080276
EVERKQKG	8	Unmodified	_EVERKQKG_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2745056152344	2	487.274898	972.535243	-0.53909	-0.00026268	-0.12862	-6.2672E-05	-0.66771	-0.00032536	487.2748178004437	12.748	0.19494	12.748	12.66	12.855	0					5	4	2	0	0	0	0.46013	1	2799	2799		64.207	2.4427	1	827330			10240	11444	6449	6479	10402	10402					0.047876881577167296
EVEVFEKPK	9	Unmodified	_EVEVFEKPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8695983886719	3	368.869368	1103.58628	1.0631	0.00039215	0.0048212	1.7784E-06	1.0679	0.00039393	368.8693039749731	37.344	1.0519	37.344	36.801	37.853	0					58	32	3	0	0	0	0.57706	1	14788	14788		18.262	0	1	152100			10241	5134	6450	6480	10403	10403					0.03862592411906007
EVFKERIGY	9	Unmodified	_EVFKERIGY_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant;NBEAL1|p.R472Sfs*8|1|0.06|ENSG00000144426|chr2:203107741-203107742|-/CAACATA|frameshift_variant;NBEAL1|p.S520Efs*20|1|0.39|ENSG00000144426|chr2:203107879-203107880|-/G|frameshift_variant;NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.8062133789062	2	570.806031	1139.59751	0.88609	0.00050579	-0.12444	-7.103E-05	0.76166	0.00043476	570.8060003371544	31.054	0.20471	31.054	30.997	31.202	0					11	4	4	0	0	0	0.28897	1	11682	11682		51.193	17.02	1	286200			10242	4616;5386	6451	6481	10404	10404					0.0332941450603812
EVFKERIGY	9	Unmodified	_EVFKERIGY_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant;NBEAL1|p.R472Sfs*8|1|0.06|ENSG00000144426|chr2:203107741-203107742|-/CAACATA|frameshift_variant;NBEAL1|p.S520Efs*20|1|0.39|ENSG00000144426|chr2:203107879-203107880|-/G|frameshift_variant;NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.8060302734375	2	570.806031	1139.59751	0.19809	0.00011307	0.047978	2.7386E-05	0.24607	0.00014046	570.8059792664219	31.034	0.31199	31.034	30.929	31.241	0					13	6	3	0	0	0	0.048471	1	11549	11549		95.815	37.033	1	439550			10243	4616;5386	6451	6481	10405	10405					0.0332941450603812
EVFMRNIV	8	Oxidation (M)	_EVFM(Oxidation (M))RNIV_		EVFM(1)RNIV		EVFM(41)RNIV	0	0	1		tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2683715820312	2	512.268227	1022.5219	-0.32076	-0.00016432	0.89555	0.00045876	0.57479	0.00029445	512.2688119389663	41.447	0.17961	41.447	41.352	41.532	0					13	10	2	0	0	0	0.65276	1	13770	13770		40.573	10.069	1	46123			10244	22698	6452	6482	10406	10406		820			0.011541140541226014
EVFPGSSQLL	10	Unmodified	_EVFPGSSQLL_					0	0	0			REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7866821289062	2	538.784764	1075.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.997	1	42.997	42.497	43.497	0								0	0	0	0.33107	1	16253	16253		45.972	5.1941	1		+		10245	17447	6453	6483	10407	10407					0.020220193778186513
EVFSKLGLS	9	Unmodified	_EVFSKLGLS_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.S1746L|1|0.28|ENSG00000075568|chr2:97759023-97759023|G/A|missense_variant;ENST00000485245.2_1_2:98373564-98375685:-|nuORF	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.29254150390625	2	490.276575	978.538597	2.6545	0.0013014	1.1021	0.00054034	3.7566	0.0018418	490.2773001581356	12.086	0.094638	12.086	12.04	12.135	0					4	2	2	0	0	0	0.39215	1	2478	2478		42.396	1.8235	1	99733			10246	1543	6454	6484	10408	10408					0.04846938211710494
EVFYSLLNVL	10	Unmodified	_EVFYSLLNVL_					0	0	0			REV__APOA2|p.F86L|1|0.23|ENSG00000158874|chr1:161222450-161222450|G/T|missense_variant	REV__APOA2|p.F86L|1|0.23|ENSG00000158874|chr1:161222450-161222450|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.5570373535156	3	399.556902	1195.64888	0.77286	0.0003088	-0.90272	-0.00036069	-0.12986	-5.1886E-05	399.5567043628303	24.294	0.66625	24.294	24.045	24.712	0					40	13	4	0	0	0	0.60281	1	8453	8453		33.922	3.3528	1	2260000	+		10247	12185	6455	6485	10409	10409					0.05887738480100779
EVGDGEGLAI	10	Unmodified	_EVGDGEGLAI_					0	0	0			REV__ENST00000594286.5_1_19:53625810-53636169:-|nuORF	REV__ENST00000594286.5_1_19:53625810-53636169:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2370910644531	2	480.237647	958.460741	0.046296	2.2233E-05	-0.69054	-0.00033162	-0.64424	-0.00030939	480.2372532477349	24.682	0.35933	24.682	24.53	24.889	0					14	10	2	0	0	0	0.46215	1	7314	7314		49.442	8.6634	1	108690	+		10248	20554	6456	6486	10410	10410					-0.020151194443315035
EVGEAIQEKI	10	Unmodified	_EVGEAIQEKI_					0	0	0		AKR1B10|p.Q198Hfs*53|1|0.07|ENSG00000198074|chr7:134537091-134537092|-/CT|frameshift_variant;AKR1B10|p.T244Nfs*29|1|0.39|ENSG00000198074|chr7:134537643-134537644|-/A|frameshift_variant;nc|ENSG00000227471|C9JRZ8|AKR1B15;ENSG00000198074|ENST00000359579|AKR1B10;ENSG00000227471|ENST00000457545|AKR1B15	AKR1B10|p.Q198Hfs*53|1|0.07|ENSG00000198074|chr7:134537091-134537092|-/CT|frameshift_variant	AKR1B10|p.Q198Hfs*53|1|0.07|ENSG00000198074|chr7:134537091-134537092|-/CT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.3011474609375	2	558.300778	1114.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.17	1	37.17	36.67	37.67	0								0	0	0	0.39499	1	14072	14072		27.047	8.7852	1				10249	109	6457	6487	10411	10411					0.03429387060964473
EVGFFVTLHE	10	Unmodified	_EVGFFVTLHE_					0	0	0			REV__ENSG00000232030|ENST00000416929|MAGEB6B	REV__ENSG00000232030|ENST00000416929|MAGEB6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.2980346679688	2	589.298039	1176.58152	0.18044	0.00010633	-0.3793	-0.00022352	-0.19886	-0.00011719	589.2980710571109	29.166	0.77608	29.166	28.918	29.694	0					52	19	3	0	0	0	0.52707	1	10358	10358		42.396	5.9494	1	529020	+		10250	17647	6458	6488	10412	10412					0.00029708269130424014
EVGMVISAFND	11	Unmodified	_EVGMVISAFND_					0	0	0			REV__ATP1A2|p.T757M|1|0.37|ENSG00000018625|chr1:160135588-160135588|C/T|missense_variant	REV__ATP1A2|p.T757M|1|0.37|ENSG00000018625|chr1:160135588-160135588|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.2802124023438	2	591.278989	1180.54342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.037	1	37.037	36.537	37.537	0								0	0	0	0.3769	1	14462	14462		41.427	3.6151	1		+		10251	12253	6459	6489	10413	10413					-0.03962545707827303
EVGMYGKIAV	10	Unmodified	_EVGMYGKIAV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7858276367188	2	533.78371	1065.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.648	1	23.648	23.148	24.148	0								0	0	0	0.37602	1	6873	6873		37.812	3.639	1				10252	6043	6460	6490	10414	10414					0.022712673683372486
EVHAGLGELL	10	Unmodified	_EVHAGLGELL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2855224609375	2	519.284931	1036.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.876	1	32.876	32.376	33.376	0								0	0	0	0.12385	1	12109	12109		53.351	9.2347	1				10253	4869	6461	6491	10415	10415					0.03849439097666618
EVHALRHM	8	Unmodified	_EVHALRHM_					0	0	0			REV__nc|ENSG00000138101|O60941-6|DTNB	REV__nc|ENSG00000138101|O60941-6|DTNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.75762939453125	2	496.758361	991.502169	0.11546	5.7357E-05	-1.9839	-0.00098551	-1.8684	-0.00092815	496.7574019214726	26.795	0.10977	26.795	26.75	26.86	0					8	4	2	0	0	0	0.6282	1	8191	8191		44.531	1.6668	1	100000	+		10254	14958	6462	6492	10416	10416					0.006077828340153246
EVHEPDKLG	9	Unmodified	_EVHEPDKLG_					0	0	0			REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2590942382812	2	512.258914	1022.50327	0.05444	2.7888E-05	-0.9931	-0.00050872	-0.93866	-0.00048084	512.2587350418049	23.136	0.26137	23.136	22.99	23.252	0					11	5	3	0	0	0	0.33044	1	7815	7815		47.657	6.8792	1	386050	+		10255	17840	6463	6493	10417	10417					-0.007077243161006663
EVHNKVGSTN	10	Unmodified	_EVHNKVGSTN_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7703857421875	2	542.772719	1083.53089	2.0416	0.0011081	-2.8323	-0.0015373	-0.79078	-0.00042921	542.7719018769928	32.244	0.56242	32.244	32.126	32.688	0					26	13	3	0	0	0	0.536	1	12269	12269		41.427	2.1738	1	340210			10256	6988	6464	6494	10418	10418					-0.007538210558323044
EVIDGPVIDK	10	Unmodified	_EVIDGPVIDK_					0	0	0			REV__ATP2A2|p.N330Mfs*55|1|0.41|ENSG00000174437|chr12:110327907-110327907|A/-|frameshift_variant	REV__ATP2A2|p.N330Mfs*55|1|0.41|ENSG00000174437|chr12:110327907-110327907|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.2015380859375	3	362.201007	1083.58119	1.1591	0.00041983	-0.12008	-4.3492E-05	1.039	0.00037634	362.201094203338	23.226	0.2187	23.226	23.117	23.335	0					7	4	2	0	0	0	0.63019	1	7860	7860		30.569	1.0181	1	618200	+		10257	12255	6465	6495	10419	10419					0.042742885492771165
EVIFEPTKK	9	Unmodified	_EVIFEPTKK_					0	0	0			REV__ENST00000524061.1_1_8:10645233-10677771:-|nuORF	REV__ENST00000524061.1_1_8:10645233-10677771:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.544189453125	3	364.209613	1089.60701	-2.0611	-0.00075068	2.3533	0.00085711	0.29221	0.00010643	364.21035847575746	31.006	0.13829	31.006	30.932	31.07	0					5	3	2	0	0	0	0.41113	1	10628	10628		40.778	6.8565	1	57277	+		10258	19974	6466	6496	10420	10420					0.0657918279155183
EVIIAQQTI	9	Unmodified	_EVIIAQQTI_					0	0	0		ENST00000244869.2_1_4:75251275-75251359:+|nuORF	ENST00000244869.2_1_4:75251275-75251359:+|nuORF	ENST00000244869.2_1_4:75251275-75251359:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.79541015625	2	507.795132	1013.57571	-0.60893	-0.00030921	0.9438	0.00047926	0.33487	0.00017004	507.7956359953096	34.101	0.1994	34.101	34.03	34.229	0					16	8	3	0	0	0	0.25716	1	11488	11488		54.776	3.5836	1	113030			10259	8222	6467	6497	10421	10421					0.06946609757483202
EVINDEQQAL	10	Unmodified	_EVINDEQQAL_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;nc|ENSG00000183495|Q96L91-4|EP400;EP400|p.F1094Lfs*4|2|0.18|ENSG00000183495|chr12:132006849-132006849|T/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.784912109375	2	579.785492	1157.55643	1.5784	0.00091512	-2.0829	-0.0012077	-0.50455	-0.00029253	579.7845212057678	25.746	0.54811	25.746	25.586	26.134	0					18	9	4	0	0	0	0.50287	1	9186	9186		45.022	8.5755	1	1386600			10260	6963	6468	6498	10422	10422					-0.016043913240764596
EVIPDSRKQ	9	Unmodified	_EVIPDSRKQ_					0	0	0		nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-2|NLRC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.2923583984375	2	536.293288	1070.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.03	1	24.03	23.53	24.53	0								0	0	0	0.36609	1	7297	7297		20.947	4.4738	1				10261	11634	6469	6499	10423	10423					0.039559399836207376
EVIRGRLET	9	Unmodified	_EVIRGRLET_					0	0	0			REV__nc|ENSG00000103152|P29372-5|MPG	REV__nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8162841796875	2	536.809105	1071.60366	3.345	0.0017956	1.0062	0.00054014	4.3512	0.0023357	536.8096578481595	45.82	0.36293	45.82	45.664	46.027	0					33	16	3	0	0	0	0.16002	1	18314	18314		66.429	7.6473	1	434630	+		10262	13665	6470	6500	10424	10424					0.07071932737562747
EVISVNDECL	10	Unmodified	_EVISVNDECL_					0	0	0			REV__ENST00000418919.6_1_12:65115387-65115435:-|nuORF	REV__ENST00000418919.6_1_12:65115387-65115435:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7638549804688	2	560.763171	1119.51179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.731	1	44.731	44.231	45.231	0								0	0	0	0.40063	1	17922	17922		30.318	2.0634	1		+		10263	19055	6471	6501	10425	10425					-0.04318538461780008
EVITEAEKI	9	Unmodified	_EVITEAEKI_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7897338867188	2	516.284597	1030.55464	1.537	0.00079353	3.3039	0.0017058	4.8409	0.0024993	516.7887485278552	31.462	0.45963	31.462	31.258	31.718	0					35	9	7	0	0	0	0.25716	1	11752	11752		54.776	1.8396	1	1384800			10264	107	6472	6502	10426	10426					0.040585996579466155
EVIVGADKYH	10	Unmodified	_EVIVGADKYH_					0	0	0		TK1|p.G176V|1|0.23|ENSG00000167900|chr17:78174937-78174937|C/A|missense_variant	TK1|p.G176V|1|0.23|ENSG00000167900|chr17:78174937-78174937|C/A|missense_variant	TK1|p.G176V|1|0.23|ENSG00000167900|chr17:78174937-78174937|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.5328674316406	3	377.532868	1129.57677	0.80926	0.00030552	-0.45676	-0.00017244	0.35249	0.00013308	377.5326281651942	23.006	0.17703	23.006	22.93	23.107	0					8	4	3	0	0	0	0.59277	1	7572	7572		35.152	1.2304	1	138890			10265	22534	6473	6503	10427	10427					0.017168241263561868
EVIYMIEL	8	Oxidation (M)	_EVIYM(Oxidation (M))IEL_		EVIYM(1)IEL		EVIYM(71)IEL	0	0	1		nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2672119140625	2	513.264819	1024.51508	1.4468	0.0007426	3.0412	0.001561	4.4881	0.0023036	513.2662371515829	35.759	0.2642	35.759	35.568	35.833	0					10	5	3	0	0	0	0.39542	1	13854	13854		71.378	15.874	1	357200			10266	11726	6474	6504	10428	10428		460			0.0038075638285590685
EVKAALFLAA	10	Unmodified	_EVKAALFLAA_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.8058471679688	2	516.808042	1031.60153	-1.49	-0.00077002	-2.4501	-0.0012663	-3.9401	-0.0020363	516.8066630866468	28.875	0.14227	28.875	28.78	28.923	0					5	3	2	0	0	0	0.50287	1	9651	9651		32.812	2.3088	1	123100	+		10267	14545	6475	6505	10429	10429					0.08699503999741864
EVKDFHAK	8	Unmodified	_EVKDFHAK_					0	0	0			REV__ENSG00000135773|ENST00000271971|CAPN9	REV__ENSG00000135773|ENST00000271971|CAPN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.25885009765625	2	487.258717	972.50288	0.81161	0.00039546	-1.3528	-0.00065915	-0.54116	-0.00026368	487.2582336658567	34.481	0.35725	34.481	34.277	34.635	0					19	7	3	0	0	0	0.51384	1	13213	13213		58.782	5.4305	1	778640	+		10268	14820	6476	6506	10430	10430					0.015529007547115725
EVKISAKKDIM	11	Unmodified	_EVKISAKKDIM_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	631.3612060546875	2	631.362856	1260.71116	-2.185	-0.0013796	-0.50221	-0.00031708	-2.6873	-0.0016966	631.3625333320444	16.302	0.92264	16.302	16.182	17.105	0					41	26	3	0	0	0	0.44903	2	3809	3809;3995		47.96	3.6039	1	327210			10269	6578	6477	6507	10431;10432	10431					0.09123141556756309
EVKLEQLL	8	Unmodified	_EVKLEQLL_					0	0	0			REV__KLHL1|p.V144L|1|0.04|ENSG00000150361|chr13:70107270-70107270|C/G|missense_variant	REV__KLHL1|p.V144L|1|0.04|ENSG00000150361|chr13:70107270-70107270|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2920837402344	2	486.292225	970.569897	0.64299	0.00031268	-0.91806	-0.00044645	-0.27507	-0.00013376	486.29177533782206	34.651	0.8251	34.651	34.044	34.869	0					42	21	4	0	0	0	0.39125	1	13404	13404		71.877	4.5503	1	753470	+		10270	20791	6478	6508	10433	10433					0.08343511245811897
EVKTVTVKI	9	Unmodified	_EVKTVTVKI_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1;nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2	ENSG00000165092|ENST00000297785|ALDH1A1;nc|ENSG00000128918|O94788-3|ALDH1A2	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.5496826171875	3	339.549859	1015.62775	-0.052339	-1.7772E-05	-0.1083	-3.6774E-05	-0.16064	-5.4546E-05	339.54979866965186	27.54	0.093718	27.54	27.494	27.588	0					4	2	2	0	0	0	0.59802	1	9034	9034		22.58	6.9378	1	83291			10271	5756;11516	6479	6509	10434	10434					0.120557731712438
EVKVGNKMV	9	Unmodified	_EVKVGNKMV_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000483047.5_1_2:110321941-110325397:-|nuORF;ENST00000468616.5_1_2:110303765-110325397:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2840576171875	2	502.283877	1002.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.809	1	26.809	26.309	27.309	0								0	0	0	0.23459	1	8686	8686		45.952	1.8352	1				10272	7146	6480	6510	10435	10435					0.05202687088217317
EVLAAGKVA	9	Unmodified	_EVLAAGKVA_					0	0	0			REV__ENSG00000087074|ENST00000200453|PPP1R15A	REV__ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2577209472656	2	429.258185	856.501818	0.20936	8.987E-05	-0.52243	-0.00022426	-0.31307	-0.00013439	429.2578529047054	29.22	0.1974	29.22	29.125	29.323	0					11	7	2	0	0	0	0.14603	1	9198	9198		68.787	0	1	187010	+		10273	13376	6481	6511	10436	10436					0.06782686385804482
EVLAAMRAAE	10	Unmodified	_EVLAAMRAAE_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7745971679688	2	530.776416	1059.53828	0.11749	6.2358E-05	-1.7254	-0.00091578	-1.6079	-0.00085342	530.775623276558	23.043	0.30586	23.043	22.958	23.263	0					13	7	2	0	0	0	0.50881	1	7583	7583		44.377	0.26039	1	421210	+		10274	21137	6482	6512	10437	10437					0.010891952201973254
EVLAGLSTLL	10	Unmodified	_EVLAGLSTLL_					0	0	0			REV__ENST00000380483.7_1_X:15262630-15266835:-|nuORF	REV__ENST00000380483.7_1_X:15262630-15266835:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3048400878906	2	508.305332	1014.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.245	1	42.245	41.745	42.745	0								0	0	0	0.32041	1	16586	16586		47.657	1.6851	1		+		10275	18772	6483	6513	10438	10438					0.08939780417290422
EVLGEKKK	8	Unmodified	_EVLGEKKK_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7841796875	2	465.784567	929.554582	0.67421	0.00031404	-1.3895	-0.00064722	-0.71531	-0.00033318	465.7838662379645	13.758	0.25944	13.758	13.655	13.914	0					6	5	2	0	0	0	0.67394	1	3280	3280		37.159	2.9866	1	345620			10276	1177	6484	6514	10439	10439					0.08698644448611503
EVLGSLLSSR	10	Unmodified	_EVLGSLLSSR_					0	0	0			REV__ENST00000272133.3_1_1:224804098-224804761:+|nuORF	REV__ENST00000272133.3_1_1:224804098-224804761:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8036499023438	2	530.803488	1059.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.167	1	29.167	28.667	29.667	0								0	0	0	0.3639	1	10770	10770		40.778	0	1		+		10277	18104	6485	6515	10440	10440					0.0650111064342127
EVLKPLKVI	9	Unmodified	_EVLKPLKVI_					0	0	0		ENST00000604062.6_2_X:53123411-53128703:+|nuORF	ENST00000604062.6_2_X:53123411-53128703:+|nuORF	ENST00000604062.6_2_X:53123411-53128703:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.9021301269531	3	346.902232	1037.68487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.009	1	36.009	35.509	36.509	0								0	0	0	0.22075	1	11806	11806		47.96	1.5027	1				10278	11059	6486	6516	10441	10441					0.1675324044761055
EVLKVEANH	9	Unmodified	_EVLKVEANH_					0	0	0			REV__NRK|p.D195Efs*12|1|0.15|ENSG00000123572|chrX:105898587-105898588|-/G|frameshift_variant	REV__NRK|p.D195Efs*12|1|0.15|ENSG00000123572|chrX:105898587-105898588|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7798461914062	2	519.782556	1037.55056	-0.27479	-0.00014283	-4.2075	-0.002187	-4.4823	-0.0023298	519.7799829570328	15.314	0.11097	15.314	15.259	15.37	0					6	2	3	0	0	0	0.53083	1	4172	4172		29.15	0	1	345140	+		10279	21308	6487	6517	10442	10442					0.033285549548736526
EVLLCLFK	8	Carbamidomethyl (C)	_EVLLC(Carbamidomethyl (C))LFK_	EVLLC(1)LFK		EVLLC(48)LFK		0	1	0		SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2917785644531	2	511.291171	1020.56779	0.020955	1.0714E-05	1.4883	0.00076093	1.5092	0.00077165	511.2920208826908	38.623	0.16828	38.623	38.543	38.712	0					6	3	2	0	0	0	0.60719	1	15229	15229		47.916	30.551	1	85558			10280	2476	6488	6518	10443	10443	100				0.058327592363411895
EVLLRYNMI	9	Unmodified	_EVLLRYNMI_					0	0	0			REV__tr|U7T164|U7T164_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00707PE=3SV=1	REV__tr|U7T164|U7T164_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00707PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.8179931640625	2	575.818084	1149.62162	1.5816	0.00091074	-1.4253	-0.00082073	0.15631	9.0004E-05	575.8174331111783	38.343	0.40527	38.343	38.211	38.617	0					41	14	4	0	0	0	0.37197	1	14540	14540		44.117	0	1	259340	+		10281	22073	6489	6519	10444	10444					0.05278931668067344
EVLNQVVL	8	Unmodified	_EVLNQVVL_					0	0	0		tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.27105712890625	2	457.271293	912.528032	-0.62373	-0.00028521	0.4289	0.00019612	-0.19483	-8.9091E-05	457.2714740922198	29.193	0.41104	29.193	29.034	29.445	0					23	10	3	0	0	0	0.5676	1	10410	10410		53.351	3.9099	1	511980			10282	22647	6490	6520	10445	10445					0.06826955557278325
EVLPEAST	8	Unmodified	_EVLPEAST_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.2159423828125	2	423.216183	844.417813	-2.6098	-0.0011045	2.5953	0.0010984	-0.014567	-6.1648E-06	423.21712110165913	31.337	0.21774	31.337	31.257	31.475	0					12	5	3	0	0	0	0.57802	1	10772	10772		52.299	0	1	383400			10283	3651	6491	6521	10446	10446					-0.010618895017501018
EVLPFQIGTT	10	Unmodified	_EVLPFQIGTT_					0	0	0		ENST00000480022.1_1_20:40043429-40043612:-|nuORF	ENST00000480022.1_1_20:40043429-40043612:-|nuORF	ENST00000480022.1_1_20:40043429-40043612:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8696594238281	3	368.869368	1103.58628	1.0648	0.00039278	0.0081494	3.006E-06	1.073	0.00039579	368.8693960195257	38.232	1.2864	38.232	37.846	39.132	0					63	45	2	0	0	0	0.66185	1	14995	14995		31.634	6.0602	1	99535			10284	9946	6492	6522	10447	10447					0.03862592411906007
EVLSSPVLCCL	11	Unmodified	_EVLSSPVLCCL_					0	0	0			REV__nc|ENSG00000258597|P20848|SERPINA2	REV__nc|ENSG00000258597|P20848|SERPINA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.7933959960938	2	581.79596	1161.57737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.593	1	10.593	10.093	11.093	0								0	0	0	0.45674	1	2043	2043		10.265	0.5596	1		+		10285	21239	6493	6523	10448	10448					0.003041594595515562
EVLTENLR	8	Unmodified	_EVLTENLR_					0	0	0		ENSG00000131381|ENST00000253699|RBSN	ENSG00000131381|ENST00000253699|RBSN	ENSG00000131381|ENST00000253699|RBSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2690734863281	2	487.269281	972.52401	-0.055451	-2.702E-05	-1.2165	-0.00059279	-1.272	-0.00061981	487.26899942815936	26.451	0.15085	26.451	26.387	26.538	0					7	5	2	0	0	0	0.58597	1	8050	8050		51.335	0	1	112180			10286	3717	6494	6524	10449	10449					0.03664866063559202
EVNKFQMAY	9	Unmodified	_EVNKFQMAY_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.2720947265625	2	565.270967	1128.52738	1.4478	0.00081838	0.87789	0.00049625	2.3257	0.0013146	565.2711140043672	35.708	0.15608	35.708	35.613	35.769	0					10	7	2	0	0	0	0.23186	1	11709	11709		57.811	9.8957	1	61113			10287	4377	6495	6525	10450	10450					-0.03174207154074793
EVNKFQMAY	9	Unmodified	_EVNKFQMAY_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.2714233398438	2	565.270967	1128.52738	1.7736	0.0010025	-0.72771	-0.00041135	1.0459	0.00059119	565.270645206386	35.983	0.24123	35.983	35.865	36.106	0					16	6	3	0	0	0	0.0074068	1	13516	13516		147.69	70.847	1	282110			10288	4377	6495	6525	10451	10451					-0.03174207154074793
EVNKFQMAY	9	Unmodified	_EVNKFQMAY_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.2708740234375	2	565.270967	1128.52738	0.31341	0.00017716	0.46065	0.00026039	0.77405	0.00043755	565.2710070892656	35.98	0.16518	35.98	35.892	36.057	0					11	4	4	0	0	0	0.087582	1	13543	13543		82.305	18.999	1	132970			10289	4377	6495	6525	10452	10452					-0.03174207154074793
EVNKFQMAY	9	Unmodified	_EVNKFQMAY_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.2710571289062	2	565.270967	1128.52738	0.13658	7.7202E-05	0.13851	7.8294E-05	0.27508	0.0001555	565.2710639837757	35.758	0.196	35.758	35.695	35.891	0					23	9	3	0	0	0	0.036372	1	12095	12095		102.77	36.97	1	242720			10290	4377	6495	6525	10453	10453					-0.03174207154074793
EVNKFQMAY	9	Unmodified	_EVNKFQMAY_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.2713623046875	2	565.270967	1128.52738	1.9078	0.0010784	-1.377	-0.00077838	0.53074	0.00030001	565.2702882753093	35.96	0.40113	35.96	35.853	36.254	0					40	12	4	0	0	0	4.3471E-05	1	13963	13963		197.6	120.83	1	1505800			10291	4377	6495	6525	10454	10454					-0.03174207154074793
EVNKFQMAY	9	Unmodified	_EVNKFQMAY_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.2706909179688	2	565.270967	1128.52738	0.82294	0.00046518	-0.7224	-0.00040835	0.10054	5.683E-05	565.2703048870794	35.716	0.19994	35.716	35.669	35.869	0					12	7	2	0	0	0	0.05357	1	12749	12749		94.006	28.203	1	173550			10292	4377	6495	6525	10455	10455					-0.03174207154074793
EVNKFQMAY	9	Unmodified	_EVNKFQMAY_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.2717895507812	2	565.270967	1128.52738	-1.119	-0.00063255	1.0536	0.00059554	-0.065463	-3.7004E-05	565.2716421001421	35.748	0.17229	35.748	35.661	35.834	0					14	6	3	0	0	0	0.099922	1	12743	12743		79.451	24.675	1	149750			10293	4377	6495	6525	10456	10456					-0.03174207154074793
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.26708984375	2	530.266216	1058.51788	1.1237	0.00059585	-0.03261	-1.7292E-05	1.0911	0.00057856	530.2661631655553	25.178	0.22353	25.178	25.052	25.276	0					12	6	3	0	0	0	0.42902	1	7529	7529		39.253	10.103	1	146280			10294	3314	6496	6526	10457	10457					-0.009039754396098942
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2667236328125	2	530.266216	1058.51788	2.3826	0.0012634	-1.449	-0.00076835	0.93363	0.00049507	530.2654859858909	25.458	0.48008	25.458	25.195	25.675	0					18	11	3	0	0	0	0.0049871	1	8692	8692		158.07	97.956	1	1141400			10295	3314	6496	6526	10458	10458					-0.009039754396098942
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7677612304688	2	530.266216	1058.51788	-0.026578	-1.4093E-05	0.37535	0.00019903	0.34877	0.00018494	530.266343896841	25.192	0.19391	25.192	25.127	25.321	0					10	6	2	0	0	0	0.055856	1	7802	7802		93.195	40.259	1	214360			10296	3314	6496	6526	10459	10459					-0.009039754396098942
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.266357421875	2	530.266216	1058.51788	1.7303	0.00091752	-1.4505	-0.00076916	0.27978	0.00014836	530.2654576529346	25.45	0.51474	25.45	25.138	25.653	0					16	10	3	0	0	0	0.019882	1	9024	9024		122.18	67.4	1	853770			10297	3314	6496	6526	10460	10460					-0.009039754396098942
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2658081054688	2	530.266216	1058.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.3	1	25.3	24.8	25.8	0								0	0	0	0.29774	1	8023	8023		35.618	7.736	1				10298	3314	6496	6526	10461	10461					-0.009039754396098942
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2662963867188	2	530.266216	1058.51788	1.204	0.00063841	-0.035767	-1.8966E-05	1.1682	0.00061945	530.2663025584043	25.259	0.18585	25.259	25.171	25.357	0					9	4	3	0	0	0	0.028876	1	7995	7995		110.12	41.333	1	175430			10299	3314	6496	6526	10462	10462					-0.009039754396098942
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2666015625	2	530.266216	1058.51788	0.72915	0.00038664	-0.040755	-2.1611E-05	0.6884	0.00036503	530.2660824098532	25.372	0.31792	25.372	25.264	25.582	0					8	6	2	0	0	0	0.056004	1	8884	8884		93.143	50.279	1	520210			10300	3314	6496	6526	10463	10463					-0.009039754396098942
EVNPNTRVM	9	Unmodified	_EVNPNTRVM_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3;ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2669067382812	2	530.266216	1058.51788	1.6455	0.00087254	-0.88944	-0.00047164	0.75603	0.0004009	530.2657587389585	25.355	0.36919	25.355	25.196	25.565	0					16	7	4	0	0	0	0.0025054	1	8876	8876		171.53	110.56	1	1471000			10301	3314	6496	6526	10464	10464					-0.009039754396098942
EVNSGFFYK	9	Unmodified	_EVNSGFFYK_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;CCT6B|p.I274*|1|0.1|ENSG00000132141|chr17:34942549-34942549|T/-|frameshift_variant;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.764892578125	2	545.763832	1089.51311	1.8642	0.0010174	-0.88267	-0.00048173	0.98153	0.00053569	545.7634705788793	36.461	0.37307	36.461	36.351	36.724	0					27	10	4	0	0	0	0.037569	1	13747	13747		101.6	29.723	1	547250			10302	3762	6497	6527	10465	10465					-0.02806536310708907
EVNSGFFYK	9	Unmodified	_EVNSGFFYK_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;CCT6B|p.I274*|1|0.1|ENSG00000132141|chr17:34942549-34942549|T/-|frameshift_variant;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7642822265625	2	545.763832	1089.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.449	1	36.449	35.949	36.949	0								0	0	0	0.018211	1	14196	14196		101.6	21.146	1				10303	3762	6497	6527	10466	10466					-0.02806536310708907
EVNSGFFYK	9	Unmodified	_EVNSGFFYK_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;CCT6B|p.I274*|1|0.1|ENSG00000132141|chr17:34942549-34942549|T/-|frameshift_variant;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7647705078125	2	545.763832	1089.51311	1.9938	0.0010881	-0.32438	-0.00017704	1.6694	0.00091111	545.7636482598956	36.236	0.19415	36.236	36.167	36.361	0					11	7	2	0	0	0	0.35021	1	12970	12970		45.972	0.020292	1	94163			10304	3762	6497	6527	10467	10467					-0.02806536310708907
EVNSGFFYK	9	Unmodified	_EVNSGFFYK_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;CCT6B|p.I274*|1|0.1|ENSG00000132141|chr17:34942549-34942549|T/-|frameshift_variant;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7639770507812	2	545.763832	1089.51311	0.55892	0.00030504	0.12032	6.5665E-05	0.67923	0.0003707	545.7638649631613	36.376	1.1996	36.376	36.183	37.383	0					57	24	5	0	0	0	0.037569	1	14146	14146		101.6	16.685	1	845680			10305	3762	6497	6527	10468	10468					-0.02806536310708907
EVPGSLYFR	9	Unmodified	_EVPGSLYFR_					0	0	0		MAT1A|p.R391Gfs*50|1|0.37|ENSG00000151224|chr10:80273799-80273799|G/-|frameshift_variant	MAT1A|p.R391Gfs*50|1|0.37|ENSG00000151224|chr10:80273799-80273799|G/-|frameshift_variant	MAT1A|p.R391Gfs*50|1|0.37|ENSG00000151224|chr10:80273799-80273799|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2804565429688	2	534.279649	1066.54475	-1.3379	-0.00071479	3.2396	0.0017309	1.9018	0.0010161	534.2823793035818	30.962	0.51322	30.962	30.753	31.266	0					37	14	5	0	0	0	0.35045	1	10562	10562		45.952	7.1458	1	987970			10306	11350	6498	6528	10469	10469					0.014134564432197294
EVPKIVPK	8	Unmodified	_EVPKIVPK_					0	0	0			REV__ENSG00000135205|ENST00000285871|CCDC146	REV__ENSG00000135205|ENST00000285871|CCDC146	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.29217529296875	2	455.292028	908.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.781	1	31.781	31.281	32.281	0								0	0	0	1.7419	1	10560	10560		19.36	1.0356	1		+		10307	14786	6499	6529	10470	10470					0.11156136316617449
EVPNTLRVL	9	Unmodified	_EVPNTLRVL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.8103637695312	2	520.808574	1039.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.222	1	37.222	36.722	37.722	0								0	0	0	0.3119	1	12592	12592		32.812	4.5581	1				10308	4207	6500	6530	10471	10471					0.08437718368668357
EVPQALRETR	10	Unmodified	_EVPQALRETR_					0	0	0		COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant;COL9A3|p.P243Lfs*290|1|0.43|ENSG00000092758|chr20:62826243-62826243|C/-|frameshift_variant;ENST00000343916.7_1_20:61461923-61467875:+|nuORF	COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant	COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.8302612304688	2	599.830569	1197.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.046	1	41.046	40.546	41.546	0								0	0	0	0.40063	1	15610	15610		30.318	2.4355	1				10309	617	6501	6531	10472	10472					0.055667027949766634
EVPRVLSF	8	Unmodified	_EVPRVLSF_					0	0	0		tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1	tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1	tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.77130126953125	2	473.77146	945.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.836	1	25.836	25.336	26.336	0								0	0	0	1.7419	1	9053	9053		44.531	0.41427	1				10310	23019	6502	6532	10473	10473					0.05342375277143674
EVPSSSGGPLV	11	Unmodified	_EVPSSSGGPLV_					0	0	0		HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant;nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A;HNF1A|p.P379Lfs*5|3|0.42|ENSG00000135100|chr12:120996564-120996564|C/-|frameshift_variant;nc|ENSG00000135100|P20823-6|HNF1A;nc|ENSG00000135100|P20823-3|HNF1A	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7667846679688	2	514.766571	1027.51859	3.2216	0.0016584	-0.73731	-0.00037954	2.4843	0.0012788	514.765204168673	26.348	0.52062	26.348	26.218	26.739	0					17	10	2	0	0	0	0.56817	1	9297	9297		39.253	1.4413	1	2292600			10311	3966	6503	6533	10474	10474					0.005931424811024044
EVPSSVGRRA	10	Unmodified	_EVPSSVGRRA_					0	0	0			REV__nc|ENSG00000151746|Q96G01-4|BICD1	REV__nc|ENSG00000151746|Q96G01-4|BICD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2919311523438	2	529.291079	1056.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.258	1	17.258	16.758	17.758	0								0	0	0	0.37602	1	4265	4265		37.812	0.65241	1		+		10312	15488	6504	6534	10475	10475					0.041584755607118495
EVPWGQGVEI	10	Unmodified	_EVPWGQGVEI_					0	0	0		GRIA2|p.A335E|1|0.39|ENSG00000120251|chr4:157332940-157332940|C/A|missense_variant	GRIA2|p.A335E|1|0.39|ENSG00000120251|chr4:157332940-157332940|C/A|missense_variant	GRIA2|p.A335E|1|0.39|ENSG00000120251|chr4:157332940-157332940|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	371.85595703125	3	371.857351	1112.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.018	1	14.018	13.518	14.518	0								0	0	0	0.4044	1	2902	2902		29.17	1.0886	1				10313	11168	6505	6535	10476	10476					-0.001548647649542545
EVQDPAPAQ	9	Unmodified	_EVQDPAPAQ_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7288818359375	2	477.729989	953.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.945	1	21.945	21.445	22.445	0								0	0	0	0.24544	1	6127	6127		44.377	0.26039	1				10314	1284	6506	6536	10477	10477					-0.033159862415232055
EVQKLQTLV	9	Unmodified	_EVQKLQTLV_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3167114257812	2	529.316232	1056.61791	0.48546	0.00025696	0.99686	0.00052765	1.4823	0.00078462	529.3169735685558	23.933	0.088705	23.933	23.865	23.954	0					5	3	2	0	0	0	0.4966	1	6994	6994		32.812	1.2826	1	44967			10315	3486	6507	6537	10478	10478					0.09186585165844008
EVQPLHPDK	9	Unmodified	_EVQPLHPDK_					0	0	0		ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7827758789062	2	531.782556	1061.55056	1.7151	0.00091204	-1.1529	-0.00061311	0.56211	0.00029892	531.7819905671231	21.427	0.56138	21.427	21.126	21.687	0					28	11	4	0	0	0	0.21263	1	6963	6963		60.118	3.3972	1	703180			10316	7374	6508	6538	10479	10479					0.022245549548870258
EVQQHMKSL	9	Unmodified	_EVQQHMKSL_					0	0	0		ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.280517578125	2	550.281866	1098.54918	0.32195	0.00017716	-2.0637	-0.0011356	-1.7418	-0.00095847	550.2799591921764	33.163	0.25894	33.163	33.035	33.294	0					22	11	3	0	0	0	0.35021	1	11090	11090		45.972	1.8554	1	108580			10317	5898	6509	6539	10480	10480					0.003845975945068858
EVQSNRLFA	9	Unmodified	_EVQSNRLFA_					0	0	0			REV__ENSG00000145113|ENST00000463781|MUC4	REV__ENSG00000145113|ENST00000463781|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2802734375	2	532.28018	1062.54581	2.3801	0.0012669	-2.031	-0.0010811	0.3491	0.00018582	532.2788116870519	20.482	0.19013	20.482	20.387	20.577	0					12	4	4	0	0	0	0.47038	1	6378	6378		35.618	0	1	264600	+		10318	15257	6510	6540	10481	10481					0.01703670812139535
EVRAAGLRAL	10	Unmodified	_EVRAAGLRAL_					0	0	0		RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF;RICTOR|p.K678Nfs*14|1|0.2|ENSG00000164327|chr5:38959796-38959796|T/-|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.54852294921875	3	352.548852	1054.62473	-0.8449	-0.00029787	0.20588	7.2582E-05	-0.63902	-0.00022529	352.548977076656	18.469	0.11711	18.469	18.386	18.503	0					8	4	2	0	0	0	0.36647	1	4834	4834		59.931	1.7009	1	138740			10319	5684	6511	6541	10482	10482					0.09959942837076596
EVRGNGSL	8	Unmodified	_EVRGNGSL_					0	0	0		ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	ENSG00000243232|ENST00000289269|PCDHAC2	ENSG00000243232|ENST00000289269|PCDHAC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.2198791503906	2	416.219591	830.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.68	1	26.68	26.18	27.18	0								0	0	0	1.7419	1	8419	8419		56.721	10.769	1				10320	7952	6512	6542	10483	10483					0.002634681694871688
EVRKRNSTQ	9	Unmodified	_EVRKRNSTQ_					0	0	0			REV__nc|ENSG00000118557|Q8TBY8-1|PMFBP1	REV__nc|ENSG00000118557|Q8TBY8-1|PMFBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099304199219	3	373.207266	1116.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.956	1	52.956	52.456	53.456	0								0	0	0	0.28666	1	20478	20478		37.812	0	1		+		10321	20991	6513	6543	10484	10484					0.046332629637163336
EVRLVLCGE	9	Unmodified	_EVRLVLCGE_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.27142333984375	2	509.273509	1016.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.259	1	36.259	35.759	36.759	0								0	0	0	0.31838	1	14107	14107		31.53	1.2121	1				10322	766	6514	6544	10485	10485					0.024860967085487573
EVRPSAVDP	9	Unmodified	_EVRPSAVDP_					0	0	0			REV__SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant	REV__SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2539367675781	2	485.253631	968.49271	-0.65611	-0.00031838	0.84525	0.00041016	0.18914	9.178E-05	485.254403280803	32.589	0.28512	32.589	32.432	32.717	0					13	7	3	0	0	0	0.35021	1	12409	12409		45.972	5.1941	1	219470	+		10323	14876	6515	6545	10486	10486					0.007202930294738508
EVRVYVGPR	9	Unmodified	_EVRVYVGPR_					0	0	0			REV__ENST00000565049.1_1_16:33499109-33500962:-|nuORF	REV__ENST00000565049.1_1_16:33499109-33500962:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8068237304688	2	537.806365	1073.59818	0.69567	0.00037414	-0.14979	-8.0556E-05	0.54589	0.00029358	537.8062998312766	28.518	0.2151	28.518	28.409	28.624	0					8	4	2	0	0	0	0.15558	1	10355	10355		69.628	3.1983	1	334590	+		10324	20330	6516	6546	10487	10487					0.0643225394574074
EVSDPPIA	8	Unmodified	_EVSDPPIA_					0	0	0			REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.2108459472656	2	414.210901	826.407249	1.0323	0.00042761	-0.98763	-0.00040909	0.044717	1.8522E-05	414.21045586600826	31.604	0.25707	31.604	31.49	31.747	0					13	6	3	0	0	0	0.61433	1	11504	11504		46.766	0	1	395240	+		10325	12125	6517	6547	10488	10488					-0.012898721562009996
EVSDPPIA	8	Unmodified	_EVSDPPIA_					0	0	0			REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2106018066406	2	414.210901	826.407249	-0.068352	-2.8312E-05	-0.60207	-0.00024939	-0.67042	-0.0002777	414.21067628492875	31.348	0.22047	31.348	31.266	31.487	0					11	5	3	0	0	0	0.61433	1	10776	10776		46.766	2.2354	1	128870	+		10326	12125	6517	6547	10489	10489					-0.012898721562009996
EVSDPPIA	8	Unmodified	_EVSDPPIA_					0	0	0			REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.21112060546875	2	414.210901	826.407249	0.98394	0.00040756	-1.2831	-0.00053148	-0.29917	-0.00012392	414.2103707313089	31.563	0.46647	31.563	31.403	31.869	0					14	9	2	0	0	0	0.4434	1	11800	11800		65.897	11.133	1	772370	+		10327	12125	6517	6547	10490	10490					-0.012898721562009996
EVSEILDEMSH	11	Unmodified	_EVSEILDEMSH_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	644.7883911132812	2	644.789918	1287.56528	-0.56377	-0.00036351	-1.1125	-0.00071734	-1.6763	-0.0010809	644.7894628524141	13.518	0.27772	13.518	13.313	13.591	0					10	6	2	0	0	0	0.65907	1	3327	3327		31.53	5.9558	1	197880			10328	3013	6518	6548	10491	10491					-0.06699785749901821
EVSKDAVIV	9	Unmodified	_EVSKDAVIV_					0	0	0		nc|ENSG00000204334|A1L162|ERICH2;ENSG00000204334|ENST00000697325|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.273681640625	2	480.274032	958.533512	0.032647	1.568E-05	-0.66733	-0.0003205	-0.63468	-0.00030482	480.2736473989996	33.714	0.34887	33.714	33.636	33.985	0					36	14	4	0	0	0	0.098791	1	10981	10981		79.713	0	1	1419600			10329	11720	6519	6549	10492	10492					0.05258634349104341
EVSKGSENAP	10	Unmodified	_EVSKGSENAP_					0	0	0		ENST00000316660.6_1_18:57570844-57570931:+|nuORF	ENST00000316660.6_1_18:57570844-57570931:+|nuORF	ENST00000316660.6_1_18:57570844-57570931:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2458190917969	2	509.246003	1016.47745	-0.017742	-9.0349E-06	0.017453	8.888E-06	-0.00028841	-1.4687E-07	509.2459356083208	26.18	0.6771	26.18	25.732	26.409	0					30	14	4	0	0	0	0.43008	1	8995	8995		52.937	1.744	1	729540			10330	8583	6520	6550	10493	10493					-0.030126185583753795
EVSKIVQTY	9	Unmodified	_EVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7935791015625	2	533.792589	1065.57063	1.1042	0.00058939	0.11918	6.3618E-05	1.2233	0.00065301	533.7926024300222	29.905	0.3026	29.905	29.817	30.119	0					23	11	3	0	0	0	0.0030642	1	9459	9459		168.26	40.797	1	776630			10331	1482	6521	6551	10494	10494					0.040463058948716935
EVSKIVQTY	9	Unmodified	_EVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.79296875	2	533.792589	1065.57063	-0.46604	-0.00024877	1.2327	0.00065802	0.76668	0.00040925	533.7931657253815	29.956	0.26974	29.956	29.853	30.123	0					18	10	2	0	0	0	0.003936	1	9777	9777		163.15	49.739	1	1247100			10332	1482	6521	6551	10495	10495					0.040463058948716935
EVSKIVQTY	9	Unmodified	_EVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7928466796875	2	533.792589	1065.57063	1.7542	0.00093636	-0.6805	-0.00036324	1.0737	0.00057312	533.7921419207072	30.186	0.4218	30.186	30.042	30.464	0					22	9	4	0	0	0	0.00065248	1	11243	11243		186.41	67.668	1	6350100			10333	1482	6521	6551	10496	10496					0.040463058948716935
EVSKIVQTY	9	Unmodified	_EVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7935791015625	2	533.792589	1065.57063	2.0556	0.0010973	-0.36752	-0.00019618	1.6881	0.00090109	533.7920011443177	29.97	0.14012	29.97	29.907	30.047	0					8	3	3	0	0	0	0.020674	1	10148	10148		120.87	30.499	1	141130			10334	1482	6521	6551	10497	10497					0.040463058948716935
EVSKIVQTY	9	Unmodified	_EVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7932739257812	2	533.792589	1065.57063	1.1184	0.00059698	-0.27452	-0.00014654	0.84386	0.00045045	533.7923614045449	29.975	0.33134	29.975	29.865	30.197	0					18	8	3	0	0	0	0.010494	1	10125	10125		139.97	10.288	1	1183500			10335	1482	6521	6551	10498	10498					0.040463058948716935
EVSKIVQTY	9	Unmodified	_EVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7930908203125	2	533.792589	1065.57063	0.71314	0.00038067	-0.1076	-5.7439E-05	0.60553	0.00032323	533.7925036960153	30.108	0.36251	30.108	29.997	30.359	0					15	7	3	0	0	0	3.4569E-05	1	11095	11095		199.7	72.243	1	1832300			10336	1482	6521	6551	10499	10499					0.040463058948716935
EVSKIVQTY	9	Unmodified	_EVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7929077148438	2	533.792589	1065.57063	1.8041	0.00096303	-0.65944	-0.000352	1.1447	0.00061103	533.7922053291343	30.139	0.4615	30.139	29.98	30.441	0					17	9	2	0	0	0	0.0030642	1	11108	11108		168.26	47.637	1	7093300			10337	1482	6521	6551	10500	10500					0.040463058948716935
EVSPLKKY	8	Unmodified	_EVSPLKKY_					0	0	0			REV__nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	REV__nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	321.8538818359375	3	321.855171	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.702	1	14.702	14.202	15.202	0								0	0	0	1.7419	1	3073	3073		16.473	6.2079	1		+		10338	13900	6522	6552	10501	10501					0.06091242074319325
EVSRVTSF	8	Unmodified	_EVSRVTSF_					0	0	0			REV__ENSG00000237110|ENST00000434551|TAAR9	REV__ENSG00000237110|ENST00000434551|TAAR9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.74432373046875	2	462.742899	923.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.202	1	37.202	36.702	37.702	0								0	0	0	1.7419	1	12585	12585		37.159	1.5408	1		+		10339	17667	6523	6553	10502	10502					0.006449080007769226
EVTAPLYR	8	Unmodified	_EVTAPLYR_					0	0	0			REV__ENSG00000101435|ENST00000376979|CST9L	REV__ENSG00000101435|ENST00000376979|CST9L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7593078613281	2	474.761092	947.507631	0.61486	0.00029191	-2.0162	-0.00095719	-1.4013	-0.00066528	474.76053131991284	35.229	0.29409	35.229	35.064	35.359	0					16	8	3	0	0	0	0.70055	1	13576	13576		33.516	0	1	654080	+		10340	13605	6524	6554	10503	10503					0.031777848974684275
EVTDPSHAP	9	Unmodified	_EVTDPSHAP_					0	0	0		ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant;ENSG00000174282|ENST00000380599|ZBTB4	ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.72113037109375	2	476.722164	951.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.091	1	27.091	26.591	27.591	0								0	0	0	0.28996	1	8311	8311		37.159	6.6555	1				10341	6480	6525	6555	10504	10504					-0.047882727585715656
EVTMSPAIAI	10	Unmodified	_EVTMSPAIAI_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.277099609375	2	516.275718	1030.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.843	1	39.843	39.343	40.343	0								0	0	0	0.3428	1	13376	13376		44.117	2.6902	1				10342	3298	6526	6556	10505	10505					0.02283561131434908
EVTRWQASKK	10	Unmodified	_EVTRWQASKK_					0	0	0			REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.8397216796875	2	616.840936	1231.66732	-0.4555	-0.00028097	-0.5659	-0.00034907	-1.0214	-0.00063004	616.8405898005856	36.819	0.477	36.819	36.702	37.179	0					42	13	5	0	0	0	0.61187	1	14049	14049		32.812	1.2826	1	7668200	+		10343	14648	6527	6557	10506	10506					0.06075293174649232
EVTTHQAL	8	Unmodified	_EVTTHQAL_					0	0	0		ENSG00000174840|ENST00000311180|PDE12;ENST00000487257.1_2_3:57545269-57545728:+|nuORF	ENSG00000174840|ENST00000311180|PDE12	ENSG00000174840|ENST00000311180|PDE12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.7370910644531	2	449.735074	897.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.59	1	45.59	45.09	46.09	0								0	0	0	1.7419	1	18263	18263		24.203	1.1603	1				10344	6516	6528	6558	10507	10507					0.0027662148370382056
EVVDRRLSG	9	Unmodified	_EVVDRRLSG_					0	0	0			REV__PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant	REV__PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7890625	2	515.78563	1029.55671	1.3127	0.00067705	3.6839	0.0019001	4.9966	0.0025772	515.7872883172353	16.675	0.15365	16.675	16.632	16.786	0					7	5	2	0	0	0	0.36135	1	3845	3845		45.972	5.3996	1	38712	+		10345	14670	6529	6559	10508	10508					0.04311073186431713
EVVEQRDSLV	10	Unmodified	_EVVEQRDSLV_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;ENST00000252134.11_1_22:18273500-18274125:-|nuORF	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.308837890625	2	587.309135	1172.60372	-0.35937	-0.00021106	0.98477	0.00057836	0.6254	0.0003673	587.3097423477709	33.082	0.18317	33.082	33.011	33.194	0					16	8	2	0	0	0	0.54197	1	11074	11074		40.778	0.71999	1	104240			10346	7951	6530	6560	10509	10509					0.02431887946909228
EVVERLLSV	9	Unmodified	_EVVERLLSV_					0	0	0		INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant;INF2|p.P472Qfs*86|1|0.43|ENSG00000203485|chr14:104707676-104707676|C/-|frameshift_variant;INF2|p.P438Lfs*120|1|1.0|ENSG00000203485|chr14:104707576-104707576|C/-|frameshift_variant;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.5417785644531	3	348.541363	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.437	1	14.437	13.937	14.937	0								0	0	0	0.35899	1	3124	3124		30.318	3.2704	1				10347	7649	6531	6561	10510	10510					0.08266298648823067
EVVERLLSV	9	Unmodified	_EVVERLLSV_					0	0	0		INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant;INF2|p.P472Qfs*86|1|0.43|ENSG00000203485|chr14:104707676-104707676|C/-|frameshift_variant;INF2|p.P438Lfs*120|1|1.0|ENSG00000203485|chr14:104707576-104707576|C/-|frameshift_variant;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.54119873046875	3	348.541363	1042.60226	1.4569	0.0005078	-1.1651	-0.0004061	0.2918	0.0001017	348.54091788208746	14.694	0.46638	14.694	14.63	15.096	0					23	9	3	0	0	0	0.2873	1	3878	3878		67.494	29.985	1	392700			10348	7649	6531	6561	10511	10511					0.08266298648823067
EVVPKEPAL	9	Unmodified	_EVVPKEPAL_					0	0	0		ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-3|PTPRJ	ENSG00000149177|ENST00000418331|PTPRJ	ENSG00000149177|ENST00000418331|PTPRJ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.28387451171875	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.407	1	43.407	42.907	43.907	0								0	0	0	0.3428	1	17368	17368		26.693	12.918	1				10349	4864	6532	6562	10512	10512					0.06319224728747486
EVVTTEENI	9	Unmodified	_EVVTTEENI_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2568359375	2	517.256037	1032.49752	1.549	0.00080122	0.15633	8.0861E-05	1.7053	0.00088208	517.2559590153147	46.711	0.083038	46.711	46.659	46.742	0					5	3	2	0	0	0	0.56424	1	18690	18690		25.574	0	1	75291			10350	1137	6533	6563	10513	10513					-0.017428676184181313
EVVVESMEQ	9	Unmodified	_EVVVESMEQ_					0	0	0		ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-2|MIA2	ENSG00000150527|ENST00000640607|MIA2	ENSG00000150527|ENST00000640607|MIA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2435913085938	2	525.244615	1048.47468	0.095571	5.0198E-05	-1.9918	-0.0010462	-1.8963	-0.000996	525.2435896138512	11.546	0.11276	11.546	11.463	11.576	0					8	4	2	0	0	0	0.55379	1	2253	2253		26.693	3.6504	1	129090			10351	4926	6534	6564	10514	10514					-0.0476221000753867
EVYAGSHQY	9	Unmodified	_EVYAGSHQY_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2359008789062	2	527.235439	1052.45632	0.33104	0.00017453	0.4059	0.000214	0.73693	0.00038854	527.2358343019207	23.457	0.22996	23.457	23.368	23.598	0					14	8	3	0	0	0	0.048471	1	7055	7055		95.815	56.562	1	285830			10352	6922	6535	6565	10515	10515					-0.06780583867225687
EVYAGSHQY	9	Unmodified	_EVYAGSHQY_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2357788085938	2	527.235439	1052.45632	-1.2032	-0.00063439	1.9481	0.0010271	0.7449	0.00039274	527.2365549740784	23.511	0.18367	23.511	23.418	23.601	0					10	4	3	0	0	0	0.037924	1	7193	7193		101.25	43.441	1	354500			10353	6922	6535	6565	10516	10516					-0.06780583867225687
EVYAGSHQY	9	Unmodified	_EVYAGSHQY_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.23583984375	2	527.235439	1052.45632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.676	1	23.676	23.176	24.176	0								0	0	0	0.001501	1	8061	8061		124.08	63.108	1				10354	6922	6535	6565	10517	10517					-0.06780583867225687
EVYHTTVLK	9	Unmodified	_EVYHTTVLK_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3009033203125	2	545.300581	1088.58661	0.9313	0.00050784	-0.85041	-0.00046373	0.08089	4.4109E-05	545.300188712854	23.671	0.1676	23.671	23.612	23.779	0					7	3	3	0	0	0	0.17854	1	8199	8199		64.207	14.766	1	184480			10355	9204	6536	6566	10518	10518					0.04586012131721873
EVYHTTVLK	9	Unmodified	_EVYHTTVLK_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.3029174804688	2	545.300581	1088.58661	2.0083	0.0010951	-0.033396	-1.8211E-05	1.9749	0.0010769	545.3006548324836	23.534	0.14381	23.534	23.446	23.589	0					5	3	2	0	0	0	0.30951	1	7190	7190		49.442	3.4693	1	124740			10356	9204	6536	6566	10519	10519					0.04586012131721873
EVYHTTVLK	9	Unmodified	_EVYHTTVLK_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.302490234375	2	545.300581	1088.58661	1.1087	0.00060456	1.929	0.0010519	3.0377	0.0016565	545.3020530800483	23.518	0.18278	23.518	23.432	23.614	0					7	4	2	0	0	0	0.17854	1	7201	7201		64.207	2.0999	1	328540			10357	9204	6536	6566	10520	10520					0.04586012131721873
EVYHTTVLK	9	Unmodified	_EVYHTTVLK_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3020629882812	2	545.300581	1088.58661	0.57129	0.00031152	1.4451	0.00078803	2.0164	0.0010996	545.3014532437517	23.687	0.2117	23.687	23.585	23.796	0					13	4	4	0	0	0	0.023928	1	8055	8055		115.49	22.299	1	1238400			10358	9204	6536	6566	10521	10521					0.04586012131721873
EVYHTTVLK	9	Unmodified	_EVYHTTVLK_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3021240234375	2	545.300581	1088.58661	1.9505	0.0010636	1.1651	0.00063531	3.1155	0.0016989	545.301591047597	23.675	0.26174	23.675	23.568	23.829	0					11	5	3	0	0	0	0.037569	1	8070	8070		101.6	11.231	1	2337700			10359	9204	6536	6566	10522	10522					0.04586012131721873
EVYRKTVI	8	Unmodified	_EVYRKTVI_					0	0	0		ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2978515625	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.074	1	39.074	38.574	39.574	0								0	0	0	1.7419	1	15356	15356		42.396	5.237	1				10360	3041	6537	6567	10523	10523					0.0781033333993264
EVYYCSYCT	9	Unmodified	_EVYYCSYCT_					0	0	0		ZNF521|p.S561Y|1|0.27|ENSG00000198795|chr18:25226236-25226236|G/T|missense_variant	ZNF521|p.S561Y|1|0.27|ENSG00000198795|chr18:25226236-25226236|G/T|missense_variant	ZNF521|p.S561Y|1|0.27|ENSG00000198795|chr18:25226236-25226236|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.7114868164062	2	565.712093	1129.40963	0.21008	0.00011884	-0.9723	-0.00055004	-0.76222	-0.0004312	565.711375311366	18.233	0.17032	18.233	18.122	18.292	0					9	3	3	0	0	0	0.61124	1	5574	5574		17.365	0.89182	1	756260			10361	23162	6538	6568	10524	10524					-0.14989527805073521
EWDLRGISE	9	Unmodified	_EWDLRGISE_					0	0	0			REV__nc|ENSG00000166762|Q96P56-2|CATSPER2	REV__nc|ENSG00000166762|Q96P56-2|CATSPER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7686767578125	2	552.769645	1103.52474	3.6596	0.0020229	-2.8969	-0.0016013	0.76268	0.00042158	552.7681860204267	37.484	1.3101	37.484	36.846	38.156	0					36	27	2	0	0	0	0.3269	1	14790	14790		32.812	0	1	166210	+		10362	16141	6539	6569	10525	10525					-0.022883392873836783
EWELLEPAQK	10	Unmodified	_EWELLEPAQK_					0	0	0		ZNF554|p.K406Sfs*18|1|0.22|ENSG00000172006|chr19:2834449-2834449|A/-|frameshift_variant;ENSG00000172006|ENST00000317243|ZNF554	ZNF554|p.K406Sfs*18|1|0.22|ENSG00000172006|chr19:2834449-2834449|A/-|frameshift_variant	ZNF554|p.K406Sfs*18|1|0.22|ENSG00000172006|chr19:2834449-2834449|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	621.8212280273438	2	621.821878	1241.6292	-2.0883	-0.0012986	-0.095352	-5.9292E-05	-2.1837	-0.0013578	621.8217494310793	13.3	0.31165	13.3	13.038	13.35	0					40	17	3	0	0	0	0.30252	1	2634	2634		54.776	13.998	1	320210			10363	6338	6540	6570	10526	10526					0.018053624693038728
EWERIENKAQ	10	Unmodified	_EWERIENKAQ_					0	0	0			REV__ENST00000514030.1_1_5:122153007-122163181:+|nuORF	REV__ENST00000514030.1_1_5:122153007-122163181:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	651.8251342773438	2	651.825483	1301.63641	0.23133	0.00015078	-0.26755	-0.0001744	-0.036224	-2.3612E-05	651.8253003115404	19.826	0.10307	19.826	19.759	19.862	0					6	3	2	0	0	0	0.3337	1	5207	5207		63.534	10.445	1	78669	+		10364	17520	6541	6571	10527	10527					-0.002339049302463536
EWERIENKAQ	10	Unmodified	_EWERIENKAQ_					0	0	0			REV__ENST00000514030.1_1_5:122153007-122163181:+|nuORF	REV__ENST00000514030.1_1_5:122153007-122163181:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	651.8255004882812	2	651.825483	1301.63641	0.15299	9.9723E-05	-0.36217	-0.00023607	-0.20918	-0.00013635	651.825311064594	20.15	0.19113	20.15	20.05	20.241	0					9	4	3	0	0	0	0.41384	1	6208	6208		54.722	3.5297	1	748410	+		10365	17520	6541	6571	10528	10528					-0.002339049302463536
EWFTVLFH	8	Unmodified	_EWFTVLFH_					0	0	0		ENST00000419554.6_1_2:38523614-38525308:-|nuORF;ENST00000406122.5_2_2:38523614-38525308:-|nuORF	ENST00000419554.6_1_2:38523614-38525308:-|nuORF	ENST00000419554.6_1_2:38523614-38525308:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.8890380859375	3	360.183399	1077.52837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.083	1	21.083	20.583	21.583	0								0	0	0	1.7419	1	6049	6049		73.975	21.808	1				10366	9281	6542	6572	10529	10529					-0.0072962472286235425
EWIDPSGIGED	11	Unmodified	_EWIDPSGIGED_					0	0	0			REV__ENSG00000090447|ENST00000204517|TFAP4	REV__ENSG00000090447|ENST00000204517|TFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.26806640625	2	609.269675	1216.5248	-0.67341	-0.00041029	-2.5156	-0.0015327	-3.189	-0.001943	609.2684537417729	28.002	0.25243	28.002	27.912	28.165	0					15	6	3	0	0	0	0.49805	1	9856	9856		44.377	1.5129	1	364350	+		10367	13428	6543	6573	10530	10530					-0.07480384078030511
EWIFCLSTA	9	Unmodified	_EWIFCLSTA_					0	0	0			REV__ENST00000366663.9_1_1:230972959-230973187:-|nuORF	REV__ENST00000366663.9_1_1:230972959-230973187:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2530517578125	2	535.254785	1068.49502	0.17675	9.4608E-05	-1.9415	-0.0010392	-1.7648	-0.00094459	535.2535580790661	36.311	0.44008	36.311	36.123	36.563	0					31	12	3	0	0	0	0.18605	1	13644	13644		63.306	8.53	1	1923500	+		10368	18585	6544	6574	10531	10531					-0.03648994557079277
EWISEKSK	8	Unmodified	_EWISEKSK_					0	0	0			REV__CLCN4|p.F277Sfs*3|1|0.09|ENSG00000073464|chrX:10206760-10206760|T/-|frameshift_variant	REV__CLCN4|p.F277Sfs*3|1|0.09|ENSG00000073464|chrX:10206760-10206760|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.1783142089844	3	336.178313	1005.51311	-1.9109	-0.00064241	1.8249	0.00061348	-0.086049	-2.8928E-05	336.17894180399276	18.042	0.20883	18.042	17.941	18.15	0					10	4	3	0	0	0	0.65276	1	4638	4638		34.173	2.6427	1	1123900	+		10369	12509	6545	6575	10532	10532					0.010574636892783928
EWKTLRGIG	9	Unmodified	_EWKTLRGIG_					0	0	0			REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2999267578125	2	530.300916	1058.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.034	1	35.034	34.534	35.534	0								0	0	0	0.32356	1	11839	11839		30.504	1.3541	1		+		10370	19582	6546	6576	10533	10533					0.06032851571490028
EWNSTVAVV	9	Unmodified	_EWNSTVAVV_					0	0	0			REV__FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant	REV__FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7558288574219	2	502.756007	1003.49746	-0.90184	-0.00045341	0.56054	0.00028182	-0.3413	-0.00017159	502.75620644321384	35.814	0.21951	35.814	35.732	35.952	0					18	10	2	0	0	0	0.22377	1	12114	12114		58.782	7.5893	1	88324	+		10371	17725	6547	6577	10534	10534					-0.004148228277585986
EWPRHAAR	8	Unmodified	_EWPRHAAR_					0	0	0			REV__ENST00000409186.1_1_13:61989245-61989275:-|nuORF	REV__ENST00000409186.1_1_13:61989245-61989275:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7686462402344	2	511.767575	1021.5206	-1.7302	-0.00088548	1.3521	0.00069197	-0.37811	-0.0001935	511.76836583988324	38.71	0.52635	38.71	38.458	38.984	0					66	27	3	0	0	0	0.66372	1	13784	13784		38.806	1.647	1	514620	+		10372	18992	6548	6578	10535	10535					0.010696608002149333
EWPTTDLH	8	Unmodified	_EWPTTDLH_					0	0	0		ENST00000229922.6_1_6:17393869-17426848:+|nuORF	ENST00000229922.6_1_6:17393869-17426848:+|nuORF	ENST00000229922.6_1_6:17393869-17426848:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7344055175781	2	499.732532	997.45051	2.9192	0.0014588	-0.0015759	-7.8751E-07	2.9177	0.001458	499.73257892016915	33.811	0.36908	33.811	33.716	34.085	0					19	8	3	0	0	0	0.64096	1	12875	12875		42.474	1.6963	1	1866300			10373	8199	6549	6579	10536	10536					-0.048316823789150476
EWQCLDPGQ	9	Unmodified	_EWQCLDPGQ_					0	0	0		ENST00000530682.5_1_8:146054445-146055231:+|nuORF;nc|ENSG00000147789|P17097-3|ZNF7;ZNF7|p.L232Vfs*3|1|0.21|ENSG00000147789|chr8:144841792-144841793|-/A|frameshift_variant;ZNF7|p.K231Sfs*59|1|0.42|ENSG00000147789|chr8:144841793-144841793|A/-|frameshift_variant;ENSG00000147789|ENST00000532777|ZNF7;nc|ENSG00000147789|P17097-2|ZNF7	ENST00000530682.5_1_8:146054445-146055231:+|nuORF	ENST00000530682.5_1_8:146054445-146055231:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2274169921875	2	538.229299	1074.44404	0.29801	0.0001604	-4.3072	-0.0023183	-4.0092	-0.0021579	538.2266474752414	13.093	0.23316	13.093	13.001	13.234	0					10	5	3	0	0	0	0.50858	1	3113	3113		31.53	4.8369	1	804960			10374	4797	6550	6580	10537	10537					-0.09019943601947489
EWSQHLSRQQ	10	Unmodified	_EWSQHLSRQQ_					0	0	0			REV__nc|ENSG00000250486|Q96MZ4|FAM218A	REV__nc|ENSG00000250486|Q96MZ4|FAM218A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	649.8179321289062	2	649.81545	1297.61635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.836	1	28.836	28.336	29.336	0								0	0	0	0.4201	1	9041	9041		21.686	15.765	1		+		10375	21229	6551	6581	10538	10538					-0.020556558701855465
EWTIHAKP	8	Unmodified	_EWTIHAKP_					0	0	0		PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;ENST00000534803.1_1_11:35474916-35547133:-|nuORF	PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant	PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.26263427734375	2	491.261259	980.507966	2.6954	0.0013241	-0.13054	-6.413E-05	2.5648	0.00126	491.261302006728	33.475	0.21748	33.475	33.365	33.583	0					10	4	3	0	0	0	0.74117	1	12743	12743		28.254	0	1	433700			10376	4859	6552	6582	10539	10539					0.01693204617322408
EWTSGSQWN	9	Unmodified	_EWTSGSQWN_					0	0	0			REV__ENST00000471496.5_1_3:183171860-183173034:+|nuORF	REV__ENST00000471496.5_1_3:183171860-183173034:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.7283935546875	2	547.73052	1093.44649	1.2346	0.00067623	-3.6139	-0.0019795	-2.3793	-0.0013032	547.7281828923412	17.582	0.33863	17.582	17.462	17.801	0					16	10	3	0	0	0	0.59802	1	4263	4263		21.96	1.013	1	65075	+		10377	19481	6553	6583	10540	10540					-0.0964977187261411
EWWHEAQK	8	Unmodified	_EWWHEAQK_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2591552734375	2	557.259248	1112.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.719	1	11.719	11.219	12.219	0								0	0	0	1.7419	1	2470	2470		90.777	8.5361	1				10378	3949	6554	6584	10541	10541					-0.04780884876413438
EWWPKQGDS	9	Unmodified	_EWWPKQGDS_					0	0	0		ENST00000581618.1_1_17:65362606-65362693:-|nuORF	ENST00000581618.1_1_17:65362606-65362693:-|nuORF	ENST00000581618.1_1_17:65362606-65362693:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.75830078125	2	566.756538	1131.49852	3.4711	0.0019673	0.2634	0.00014928	3.7345	0.0021165	566.7567716549754	34.515	0.50437	34.515	34.409	34.913	0					24	10	3	0	0	0	0.25761	1	13226	13226		56.721	13.857	1	3858700			10379	10875	6555	6585	10542	10542					-0.06196608458844821
EYAGNVIRS	9	Unmodified	_EYAGNVIRS_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7585144042969	2	504.759081	1007.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.719	1	29.719	29.219	30.219	0								0	0	0	0.30504	1	9701	9701		34.173	5.023	1				10380	3061	6556	6586	10543	10543					0.00015695403783411166
EYAHLVQAI	9	Unmodified	_EYAHLVQAI_					0	0	0		ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2796020507812	2	522.279649	1042.54475	0.084403	4.4082E-05	1.8983	0.00099146	1.9827	0.0010355	522.2798301113711	27.462	0.84926	27.462	27.075	27.924	0					34	20	4	0	0	0	0.39215	1	9584	9584		42.396	1.618	1	261930			10381	1493	6557	6587	10544	10544					0.025174564432290936
EYAKAANVL	9	Unmodified	_EYAKAANVL_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7659606933594	2	489.766374	977.518196	-1.2536	-0.00061395	0.9301	0.00045553	-0.32346	-0.00015842	489.76665048028156	33.992	0.18525	33.992	33.913	34.098	0					13	7	2	0	0	0	0.13267	1	11430	11430		71.877	7.6702	1	117710	+		10382	13797	6558	6588	10545	10545					0.028537675519032746
EYAKIEETM	9	Unmodified	_EYAKIEETM_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.2612915039062	2	557.260265	1112.50598	1.1256	0.00062725	0.68406	0.0003812	1.8096	0.0010084	557.2605779962572	31.995	0.12485	31.995	31.923	32.048	0					5	3	2	0	0	0	0.016683	1	11088	11088		127.46	31.271	1	112930			10383	1663	6559	6589	10546	10546					-0.04577636973453991
EYAKIEETM	9	Unmodified	_EYAKIEETM_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2605590820312	2	557.260265	1112.50598	1.8242	0.0010166	-1.3512	-0.000753	0.47299	0.00026358	557.2596897823676	32.162	0.27002	32.162	32.051	32.321	0					15	5	4	0	0	0	0.0025305	1	12109	12109		171.38	80.608	1	1191100			10384	1663	6559	6589	10547	10547					-0.04577636973453991
EYAKIFTTY	9	Unmodified	_EYAKIFTTY_					0	0	0		nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.2876586914062	2	568.28714	1134.55973	1.7606	0.0010005	-1.3992	-0.00079514	0.36144	0.0002054	568.2863511633143	41.661	0.12257	41.661	41.62	41.743	0					8	6	2	0	0	0	0.22377	1	15828	15828		58.782	21.623	1	50014			10385	1762	6560	6590	10548	10548					-0.0021709647940042487
EYAKIFTTY	9	Unmodified	_EYAKIFTTY_					0	0	0		nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.2861328125	2	568.28714	1134.55973	1.9548	0.0011109	-3.1511	-0.0017907	-1.1963	-0.00067986	568.2846991898973	41.644	0.18232	41.644	41.537	41.719	0					12	7	2	0	0	0	0.39215	1	16384	16384		42.396	1.618	1	92720			10386	1762	6560	6590	10549	10549					-0.0021709647940042487
EYAKTFGYTF	10	Unmodified	_EYAKTFGYTF_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	613.7905883789062	2	613.790047	1225.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.729	1	43.729	43.229	44.229	0								0	0	0	0.18965	1	17510	17510		65.465	8.7443	1				10387	5926	6561	6591	10550	10550					-0.03821997967770585
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1;AOC1|p.R190Gfs*18|3|0.26|ENSG00000002726|chr7:150857033-150857033|C/-|frameshift_variant	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.796142578125	2	561.795132	1121.57571	1.8415	0.0010345	-0.19051	-0.00010703	1.651	0.00092751	561.7950257908826	46.635	0.26248	46.635	46.562	46.825	0					25	15	3	0	0	0	0.027316	1	17899	17899		111.65	65.696	1	253950			10388	929	6562	6592	10551	10551					0.019786097574751693
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1;AOC1|p.R190Gfs*18|3|0.26|ENSG00000002726|chr7:150857033-150857033|C/-|frameshift_variant	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.79541015625	2	561.795132	1121.57571	1.7886	0.0010048	-1.0197	-0.00057287	0.76887	0.00043195	561.7945140684892	46.593	0.24604	46.593	46.515	46.761	0					28	11	4	0	0	0	0.047412	1	18629	18629		96.19	40.686	1	281440			10389	929	6562	6592	10552	10552					0.019786097574751693
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.7986450195312	2	557.798206	1113.58186	1.4247	0.00079468	0.021819	1.2171E-05	1.4465	0.00080685	557.7982099547615	27.646	0.11068	27.646	27.583	27.694	0					6	3	2	0	0	0	0.22837	1	8557	8557		58.23	20.418	1	95654			10390	1298	6563	6593	10553	10553					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.798583984375	2	557.798206	1113.58186	0.11932	6.6558E-05	0.63877	0.00035631	0.7581	0.00042287	557.7984428941868	27.646	0.18445	27.646	27.585	27.769	0					14	6	3	0	0	0	0.11411	1	8838	8838		76.17	19.449	1	210940			10391	1298	6563	6593	10554	10554					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7987060546875	2	557.798206	1113.58186	1.1234	0.00062662	-0.20655	-0.00011522	0.91682	0.0005114	557.7980797572596	27.705	0.18081	27.705	27.658	27.838	0					6	4	2	0	0	0	0.38666	1	9107	9107		42.864	10.052	1	147800			10392	1298	6563	6593	10555	10555					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7985229492188	2	557.798206	1113.58186	-0.89052	-0.00049673	1.188	0.00066264	0.29743	0.00016591	557.7988996488017	27.738	0.18223	27.738	27.645	27.828	0					7	4	2	0	0	0	0.18416	1	9101	9101		63.534	19.157	1	126800			10393	1298	6563	6593	10556	10556					0.029611279890104925
EYCLQGNIK	9	Carbamidomethyl (C)	_EYC(Carbamidomethyl (C))LQGNIK_	EYC(1)LQGNIK		EYC(120)LQGNIK		0	1	0		PLEKHH2|p.H1178Y|1|0.48|ENSG00000152527|chr2:43743966-43743966|C/T|missense_variant	PLEKHH2|p.H1178Y|1|0.48|ENSG00000152527|chr2:43743966-43743966|C/T|missense_variant	PLEKHH2|p.H1178Y|1|0.48|ENSG00000152527|chr2:43743966-43743966|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7740478515625	2	562.773874	1123.53319	0.44948	0.00025295	0.45819	0.00025785	0.90766	0.00051081	562.774522930086	30.008	0.20487	30.008	29.922	30.127	0					14	5	4	0	0	0	0.023074	1	10766	10766		116.9	26.534	1	699480			10394	11943	6564	6594	10557	10557	475				-0.023631086424074965
EYCPPWRSP	9	Unmodified	_EYCPPWRSP_					0	0	0		MAMSTR|p.H163Tfs*9|1|0.21|ENSG00000176909|chr19:48714848-48714849|-/G|frameshift_variant;MAMSTR|p.S341Pfs*39|1|0.29|ENSG00000176909|chr19:48713495-48713495|G/-|frameshift_variant;ENSG00000176909|ENST00000318083|MAMSTR	MAMSTR|p.H163Tfs*9|1|0.21|ENSG00000176909|chr19:48714848-48714849|-/G|frameshift_variant	MAMSTR|p.H163Tfs*9|1|0.21|ENSG00000176909|chr19:48714848-48714849|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.7567749023438	2	567.755484	1133.49641	0.17134	9.7278E-05	2.8045	0.0015923	2.9759	0.0016896	567.7568044019876	13.301	0.23895	13.301	13.178	13.417	0					13	6	3	0	0	0	0.56424	1	3007	3007		25.574	1.0549	1	538360			10395	6632	6565	6595	10558	10558					-0.06499360468342275
EYDAKLEL	8	Unmodified	_EYDAKLEL_					0	0	0			REV__FAM184B|p.L321Tfs*29|1|0.36|ENSG00000047662|chr4:17707718-17707719|-/T|frameshift_variant	REV__FAM184B|p.L321Tfs*29|1|0.36|ENSG00000047662|chr4:17707718-17707719|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7502746582031	2	490.75039	979.486227	0.60458	0.0002967	-0.94881	-0.00046563	-0.34423	-0.00016893	490.75020049925024	35.515	0.11633	35.515	35.447	35.563	0					7	4	2	0	0	0	0.6088	1	12650	12650		47.657	3.2801	1	98039	+		10396	13015	6566	6596	10559	10559					-0.004336449219067617
EYDEDSLGE	9	Unmodified	_EYDEDSLGE_					0	0	0			REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7030639648438	2	528.703834	1055.39311	0.28584	0.00015113	-0.57714	-0.00030514	-0.2913	-0.00015401	528.7033919817723	13.501	0.28087	13.501	13.406	13.687	0					15	6	4	0	0	0	0.61124	1	3288	3288		12.207	0	1	1842400	+		10397	17811	6567	6597	10560	10560					-0.1323661416579398
EYDNKLTYS	9	Unmodified	_EYDNKLTYS_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7593383789062	2	566.761486	1131.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.271	1	51.271	50.771	51.771	0								0	0	0	0.3693	1	19082	19082		19.997	0.89325	1		+		10398	17669	6568	6598	10561	10561					-0.052074652441206126
EYDWYIFS	8	Unmodified	_EYDWYIFS_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B;GRIN2B|p.K488Nfs*16|1|0.06|ENSG00000273079|chr12:13615529-13615530|-/CTTCTTCTAAATATAAG|frameshift_variant	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7438354492188	2	561.742565	1121.47058	0.011084	6.2261E-06	1.0277	0.00057731	1.0388	0.00058354	561.743442023926	30.821	0.096273	30.821	30.758	30.854	0					4	2	2	0	0	0	0.64096	1	11565	11565		42.474	5.3154	1	43416			10399	8092	6569	6599	10562	10562					-0.08529931438965832
EYEDKVKK	8	Unmodified	_EYEDKVKK_					0	0	0			REV__ENSG00000112539|ENST00000230301|C6orf118	REV__ENSG00000112539|ENST00000230301|C6orf118	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.77734375	2	519.776939	1037.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.462	1	22.462	21.962	22.962	0								0	0	0	1.7419	1	6355	6355		23.042	3.6825	1		+		10400	14010	6570	6600	10563	10563					0.022057328607616
EYEVIRAK	8	Unmodified	_EYEVIRAK_					0	0	0			REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF	REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2798767089844	2	504.279649	1006.54475	-0.062537	-3.1536E-05	0.19878	0.00010024	0.13624	6.8704E-05	504.2797244733405	22.809	0.25588	22.809	22.713	22.968	0					19	8	3	0	0	0	0.37144	1	6497	6497		74.255	8.7897	1	1245800	+		10401	16219	6571	6601	10564	10564					0.041734564432204024
EYEVIRAK	8	Unmodified	_EYEVIRAK_					0	0	0			REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF	REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2806701660156	2	504.279649	1006.54475	-0.057228	-2.8859E-05	-0.081489	-4.1093E-05	-0.13872	-6.9952E-05	504.27959887254843	23.131	0.65614	23.131	23.035	23.691	0					19	15	2	0	0	0	0.63077	1	7602	7602		44.117	2.6902	1	7765400	+		10402	16219	6571	6601	10565	10565					0.041734564432204024
EYFDPSIV	8	Unmodified	_EYFDPSIV_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.R4385H|1|0.33|ENSG00000084674|chr2:21002268-21002268|C/T|missense_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2300109863281	2	485.231833	968.449113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.786	1	17.786	17.286	18.286	0								0	0	0	1.7419	1	4527	4527		40.573	3.5441	1				10403	187	6572	6602	10566	10566					-0.036373164676547276
EYFGRKEM	8	Unmodified	_EYFGRKEM_					0	0	0			REV__ENSG00000107679|ENST00000368990|PLEKHA1	REV__ENSG00000107679|ENST00000368990|PLEKHA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2504272460938	2	530.250034	1058.48552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.454	1	37.454	36.954	37.954	0								0	0	0	1.7419	1	14645	14645		47.916	8.8941	1		+		10404	13859	6573	6603	10567	10567					-0.04138762842603683
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2540283203125	2	541.2531	1080.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.042	1	47.042	46.542	47.542	0								0	0	0	1.7419	1	18801	18801		60.972	8.6728	1				10405	4964	6574	6604	10568	10568					-0.045379213394198814
EYFPPNGLYEP	11	Unmodified	_EYFPPNGLYEP_					0	0	0			REV__nc|ENSG00000164076|Q8NCB2-2|CAMKV	REV__nc|ENSG00000164076|Q8NCB2-2|CAMKV	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	663.3080444335938	2	663.306061	1324.59757	3.5017	0.0023227	-1.5164	-0.0010058	1.9853	0.0013169	663.3051284636003	21.173	0.10723	21.173	21.102	21.209	0					8	3	3	0	0	0	0.63398	1	6029	6029		33.922	1.1092	1	139860	+		10406	21096	6575	6605	10569	10569					-0.05174630284614068
EYFSSVAMGLC	11	Unmodified	_EYFSSVAMGLC_					0	0	0			REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant	REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	603.7616577148438	2	603.762117	1205.50968	0.14726	8.8908E-05	-0.30772	-0.00018579	-0.16046	-9.6879E-05	603.7620503577874	36.901	0.25851	36.901	36.81	37.068	0					27	13	3	0	0	0	0.52595	1	12073	12073		32.812	7.2384	1	183650	+		10407	12027	6576	6606	10570	10570					-0.08485290471207918
EYGLQLYLL	9	Unmodified	_EYGLQLYLL_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.306640625	2	556.305332	1110.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.386	1	54.386	53.886	54.886	0								0	0	0	0.27939	1	20773	20773		39.253	2.8061	1		+		10408	16789	6577	6607	10571	10571					0.045237804172757023
EYGLYGAMVR	10	Unmodified	_EYGLYGAMVR_					0	0	0		nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;ENSG00000119614|ENST00000261980|VSX2;ENSG00000100987|ENST00000376709|VSX1	nc|ENSG00000100987|Q9NZR4-5|VSX1	nc|ENSG00000100987|Q9NZR4-5|VSX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.7847900390625	2	579.784241	1157.55393	0.73045	0.0004235	0.95066	0.00055118	1.6811	0.00097468	579.7847434819195	25.522	0.20365	25.522	25.444	25.648	0					11	7	2	0	0	0	0.61187	1	7668	7668		32.812	0	1	169640			10409	2082	6578	6608	10572	10572					-0.018545182627349277
EYHPFLVI	8	Unmodified	_EYHPFLVI_					0	0	0			REV__ENSG00000175893|ENST00000380916|ZDHHC21	REV__ENSG00000175893|ENST00000380916|ZDHHC21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2734375	2	509.273835	1016.53312	3.0096	0.0015327	-3.3069	-0.0016841	-0.29723	-0.00015137	509.27174885979605	37.661	0.58875	37.661	37.434	38.022	0					18	12	3	0	0	0	0.4434	1	14741	14741		65.897	5.6035	1	447610	+		10410	16635	6579	6609	10573	10573					0.025512594198971783
EYIHRIGR	8	Unmodified	_EYIHRIGR_					0	0	0		ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;DDX43|p.V572I|1|0.1|ENSG00000080007|chr6:73414655-73414655|G/A|missense_variant;ENSG00000278053|ENST00000617633|DDX52	ENSG00000125485|ENST00000372159|DDX31	ENSG00000125485|ENST00000372159|DDX31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5305480957031	3	348.52968	1042.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.531	1	28.531	28.031	29.031	0								0	0	0	1.7419	1	10463	10463		30.504	0	1				10411	3419	6580	6610	10574	10574					0.04763100631521411
EYIPFAVAL	9	Unmodified	_EYIPFAVAL_					0	0	0			REV__tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	REV__tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7793273925781	2	511.781493	1021.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.969	1	27.969	27.469	28.469	0								0	0	0	0.29985	1	9220	9220		35.201	0.04869	1		+		10412	21783	6581	6611	10575	10575					0.03852126217077512
EYIPGTTSL	9	Unmodified	_EYIPGTTSL_					0	0	0		SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant;SLC38A1|p.F232Sfs*2|1|0.39|ENSG00000111371|chr12:46204542-46204542|A/-|frameshift_variant;ENSG00000111371|ENST00000398637|SLC38A1	SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant	SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7493591308594	2	490.75039	979.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.512	1	35.512	35.012	36.012	0								0	0	0	0.29774	1	11637	11637		35.618	1.4457	1				10413	2665	6582	6612	10576	10576					-0.004336449219067617
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.8046875	2	585.301113	1168.58767	0.062163	3.6384E-05	1.9885	0.0011639	2.0507	0.0012003	585.3012456475722	39.265	0.25404	39.265	39.18	39.434	0					21	8	4	0	0	0	0.01873	1	14931	14931		124.08	1.9041	1	224870			10414	4447	6583	6613	10577	10577					0.010122265006657472
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.3004150390625	2	585.301113	1168.58767	1.4038	0.00082167	-2.1228	-0.0012425	-0.71891	-0.00042078	585.2994831834101	39.224	0.3656	39.224	39.127	39.492	0					29	12	4	0	0	0	1.3754E-05	1	15423	15423		204.62	78.811	1	658290			10415	4447	6583	6613	10578	10578					0.010122265006657472
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.3009643554688	2	585.301113	1168.58767	-1.7287	-0.0010118	2.0965	0.0012271	0.36782	0.00021529	585.301978303762	39.015	0.15233	39.015	38.92	39.072	0					10	8	2	0	0	0	0.087582	1	13932	13932		82.305	14.811	1	90021			10416	4447	6583	6613	10579	10579					0.010122265006657472
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3004150390625	2	585.301113	1168.58767	3.2103	0.001879	-2.5581	-0.0014972	0.65217	0.00038172	585.2986355644323	39.199	0.59373	39.199	39.049	39.643	0					26	13	5	0	0	0	0.0012088	1	15457	15457		180.87	51.187	1	1396200			10417	4447	6583	6613	10580	10580					0.010122265006657472
EYIRTCVV	8	Unmodified	_EYIRTCVV_					0	0	0			REV__ENSG00000147588|ENST00000256103|PMP2	REV__ENSG00000147588|ENST00000256103|PMP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.75506591796875	2	491.754953	981.495352	0.58065	0.00028554	-2.6718	-0.0013139	-2.0912	-0.0010284	491.75344673674385	30.99	1.6957	30.99	30.306	32.001	0					59	37	2	0	0	0	0.64144	1	11797	11797		42.396	5.237	1	627830	+		10418	15355	6584	6614	10581	10581					0.0038642516277604955
EYISKDAPNGK	11	Unmodified	_EYISKDAPNGK_					0	0	0		tr|U7SU07|U7SU07_FUSNUSulfitereductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01055PE=3SV=1	tr|U7SU07|U7SU07_FUSNUSulfitereductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01055PE=3SV=1	tr|U7SU07|U7SU07_FUSNUSulfitereductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01055PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.3093872070312	2	611.309135	1220.60372	-0.77471	-0.00047359	1.21	0.00073967	0.43526	0.00026608	611.3098859160937	29.204	0.36845	29.204	28.996	29.364	0					24	9	3	0	0	0	0.53842	1	10413	10413		41.427	5.109	1	349200			10419	22802	6585	6615	10582	10582					0.0022388794689049973
EYISTVKTL	9	Unmodified	_EYISTVKTL_					0	0	0		ING5|p.A46V|1|0.39|ENSG00000168395|chr2:241709243-241709243|C/T|missense_variant;ENST00000492488.5_1_2:242641480-242651487:+|nuORF;ING5|p.G142Afs*58|1|0.38|ENSG00000168395|chr2:241712011-241712011|G/-|frameshift_variant;ENST00000489509.1_1_2:242641480-242659033:+|nuORF;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5;ENST00000482774.5_1_2:242641480-242659534:+|nuORF	ING5|p.A46V|1|0.39|ENSG00000168395|chr2:241709243-241709243|C/T|missense_variant	ING5|p.A46V|1|0.39|ENSG00000168395|chr2:241709243-241709243|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2949829101562	2	527.294965	1052.57538	0.10415	5.4919E-05	0.45412	0.00023946	0.55828	0.00029438	527.2947321134016	34.739	0.20725	34.739	34.641	34.848	0					11	5	3	0	0	0	0.020674	1	12968	12968		120.87	46.613	1	326380			10420	6088	6586	6616	10583	10583					0.05119190037635235
EYISTVKTL	9	Unmodified	_EYISTVKTL_					0	0	0		ING5|p.A46V|1|0.39|ENSG00000168395|chr2:241709243-241709243|C/T|missense_variant;ENST00000492488.5_1_2:242641480-242651487:+|nuORF;ING5|p.G142Afs*58|1|0.38|ENSG00000168395|chr2:241712011-241712011|G/-|frameshift_variant;ENST00000489509.1_1_2:242641480-242659033:+|nuORF;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5;ENST00000482774.5_1_2:242641480-242659534:+|nuORF	ING5|p.A46V|1|0.39|ENSG00000168395|chr2:241709243-241709243|C/T|missense_variant	ING5|p.A46V|1|0.39|ENSG00000168395|chr2:241709243-241709243|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.294921875	2	527.294965	1052.57538	-1.2032	-0.00063445	1.7678	0.00093213	0.56455	0.00029768	527.2956000952124	34.528	0.1292	34.528	34.48	34.609	0					5	3	2	0	0	0	0.078509	1	12235	12235		85.161	20.954	1	91835			10421	6088	6586	6616	10584	10584					0.05119190037635235
EYITGPGVTTY	11	Unmodified	_EYITGPGVTTY_					0	0	0		MASP2|p.F518Lfs*16|1|0.11|ENSG00000009724|chr1:11027392-11027392|A/-|frameshift_variant;ENSG00000009724|ENST00000400897|MASP2	MASP2|p.F518Lfs*16|1|0.11|ENSG00000009724|chr1:11027392-11027392|A/-|frameshift_variant	MASP2|p.F518Lfs*16|1|0.11|ENSG00000009724|chr1:11027392-11027392|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.7926635742188	2	600.792786	1199.57102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.898	1	54.898	54.398	55.398	0								0	0	0	0.44646	1	20877	20877		26.693	1.1189	1				10422	1028	6587	6617	10585	10585					-0.020783191759164765
EYKKAKLQ	8	Unmodified	_EYKKAKLQ_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2989807128906	2	504.297842	1006.58113	0.6476	0.00032659	-0.48581	-0.00024499	0.16179	8.1592E-05	504.2976121005385	20.73	1.0363	20.73	20.433	21.469	0					58	32	3	0	0	0	0.75323	1	5912	5912		26.693	0	1	122570			10423	22585	6588	6618	10586	10586					0.0781033333993264
EYKKAKLQ	8	Unmodified	_EYKKAKLQ_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2978210449219	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.702	1	24.702	24.202	25.202	0								0	0	0	1.7419	1	7595	7595		37.159	4.3467	1				10424	22585	6588	6618	10587	10587					0.0781033333993264
EYKKAKLQ	8	Unmodified	_EYKKAKLQ_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.299072265625	2	504.297842	1006.58113	1.0284	0.00051863	-0.77264	-0.00038964	0.25577	0.00012899	504.29754021035154	43.514	0.85709	43.514	43.21	44.067	0					58	45	2	0	0	0	0.78978	1	17029	17029		21.96	1.9631	1	76344			10425	22585	6588	6618	10588	10588					0.0781033333993264
EYKKAKLQ	8	Unmodified	_EYKKAKLQ_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29766845703125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.246	1	48.246	47.746	48.746	0								0	0	0	1.7419	1	18302	18302		45.952	3.5558	1				10426	22585	6588	6618	10589	10589					0.0781033333993264
EYKKAKLQ	8	Unmodified	_EYKKAKLQ_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2987060546875	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.596	1	21.596	21.096	22.096	0								0	0	0	1.7419	1	6289	6289		76.774	0	1				10427	22585	6588	6618	10590	10590					0.0781033333993264
EYKNTNEMF	9	Unmodified	_EYKNTNEMF_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	588.255615234375	2	588.255514	1174.49647	-0.39431	-0.00023196	1.0264	0.00060379	0.6321	0.00037184	588.2561983983669	32.157	0.12402	32.157	32.091	32.215	0					9	5	2	0	0	0	0.22377	1	10712	10712		58.782	12.83	1	87325			10428	1367	6589	6619	10591	10591					-0.08379405258983752
EYKNTNEMF	9	Unmodified	_EYKNTNEMF_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.2562255859375	2	588.255514	1174.49647	1.4556	0.00085625	-1.3481	-0.00079305	0.10744	6.3201E-05	588.254782314765	32.368	0.34169	32.368	32.225	32.567	0					23	8	4	0	0	0	0.016683	1	12301	12301		127.46	53.487	1	476770			10429	1367	6589	6619	10592	10592					-0.08379405258983752
EYKNTNEMF	9	Unmodified	_EYKNTNEMF_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.255615234375	2	588.255514	1174.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.162	1	32.162	31.662	32.662	0								0	0	0	0.19749	1	11156	11156		51.335	3.6781	1				10430	1367	6589	6619	10593	10593					-0.08379405258983752
EYKNTNEMF	9	Unmodified	_EYKNTNEMF_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.2548828125	2	588.255514	1174.49647	-1.7532	-0.0010313	2.0874	0.0012279	0.33415	0.00019657	588.2565157870816	32.153	0.21256	32.153	32.064	32.277	0					9	6	2	0	0	0	0.0406	1	11139	11139		98.629	24.655	1	61023			10431	1367	6589	6619	10594	10594					-0.08379405258983752
EYKTVHEEL	9	Unmodified	_EYKTVHEEL_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.2857055664062	2	574.285128	1146.5557	0.064221	3.6881E-05	0.78575	0.00045125	0.84997	0.00048813	574.2854863462052	24.41	0.13252	24.41	24.343	24.476	0					6	4	2	0	0	0	0.39215	1	7474	7474		42.396	3.1433	1	93317			10432	838	6590	6620	10595	10595					-0.01171185973134925
EYLDRAEKL	9	Unmodified	_EYLDRAEKL_					0	0	0		ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENSG00000119541|ENST00000238497|VPS4B	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.8017578125	2	568.800946	1135.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.668	1	29.668	29.168	30.168	0								0	0	0	0.03526	1	10620	10620		93.143	27.678	1				10433	3121	6591	6621	10596	10596					0.02496806780800398
EYLDRAEKL	9	Unmodified	_EYLDRAEKL_					0	0	0		ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENSG00000119541|ENST00000238497|VPS4B	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.8011474609375	2	568.800946	1135.58734	1.965	0.0011177	-1.4729	-0.00083776	0.49214	0.00027993	568.8000044023255	29.658	0.31214	29.658	29.506	29.818	0					16	6	4	0	0	0	0.0067848	1	11017	11017		150.36	6.4748	1	1148900			10434	3121	6591	6621	10597	10597					0.02496806780800398
EYLEYTLL	8	Unmodified	_EYLEYTLL_					0	0	0			REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant	REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5135498046875	3	348.514703	1042.52228	0.51326	0.00017888	-3.0948	-0.0010786	-2.5815	-0.0008997	348.51345285193133	29.591	0.31105	29.591	29.49	29.801	0					11	6	3	0	0	0	0.7126	1	10983	10983		31.955	2.8053	1	240850	+		10435	12205	6592	6622	10598	10598					0.0027181225495951367
EYLGSMAKI	9	Unmodified	_EYLGSMAKI_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2629699707031	2	506.26261	1010.51067	1.083	0.00054829	-3.2663	-0.0016536	-2.1833	-0.0011053	506.2619062288317	38.241	0.40808	38.241	37.985	38.393	0					24	14	2	0	0	0	0.33044	1	14985	14985		47.657	1.7054	1	173570			10436	6897	6593	6623	10599	10599					0.005832919599697561
EYLKTCQHA	9	Carbamidomethyl (C)	_EYLKTC(Carbamidomethyl (C))QHA_	EYLKTC(1)QHA		EYLKTC(51)QHA		0	1	0			REV__ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant	REV__ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.2699584960938	2	575.271498	1148.52844	-1.5402	-0.00088602	-0.80541	-0.00046333	-2.3456	-0.0013493	575.2708968616356	38.428	0.27307	38.428	38.332	38.605	0					30	13	3	0	0	0	0.2873	1	13731	13731		51.335	8.9393	1	321550	+		10437	12800	6594	6624	10600	10600	503				-0.03987992785187089
EYLTAEILE	9	Unmodified	_EYLTAEILE_					0	0	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000181218|ENST00000689584|H2AC25;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000180573|ENST00000377791|H2AC6;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000278463|ENST00000615868|H2AC4	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.77734375	2	540.776605	1079.53866	0.65574	0.00035461	1.5683	0.00084813	2.2241	0.0012027	540.7773192265114	33.747	0.27335	33.747	33.65	33.924	0					13	6	3	0	0	0	0.2873	1	12855	12855		51.335	1.7994	1	192920			10438	2818	6595	6625	10601	10601					0.0020689342104560637
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.8160400390625	2	554.816064	1107.61758	1.3098	0.00072671	-0.54525	-0.00030251	0.76457	0.00042419	554.8157197450114	30.997	0.25697	30.997	30.893	31.15	0					24	10	3	0	0	0	0.026538	1	9909	9909		112.41	16.22	1	750550			10439	4438	6596	6626	10602	10602					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8154296875	2	554.816064	1107.61758	0.59547	0.00033038	-0.025774	-1.43E-05	0.5697	0.00031608	554.8159616247615	31.25	0.50419	31.25	31.108	31.613	0					33	12	4	0	0	0	0.015496	1	11328	11328		129.42	33.231	1	4915000			10440	4438	6596	6626	10603	10603					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.8165283203125	2	554.816064	1107.61758	0.14349	7.9609E-05	0.84259	0.00046749	0.98608	0.00054709	554.816388809823	31.036	0.2434	31.036	30.923	31.167	0					12	9	2	0	0	0	0.19605	1	10236	10236		62.107	5.6736	1	263510			10441	4438	6596	6626	10604	10604					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.816650390625	2	554.816064	1107.61758	-0.43195	-0.00023965	1.0964	0.00060829	0.66444	0.00036864	554.8166049721023	31.031	0.19214	31.031	30.939	31.132	0					16	7	3	0	0	0	0.0037134	1	10240	10240		164.46	38.641	1	306480			10442	4438	6596	6626	10605	10605					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.816650390625	2	554.816064	1107.61758	1.6515	0.00091629	-0.62543	-0.000347	1.0261	0.00056929	554.8156305532714	31.221	0.35977	31.221	31.126	31.485	0					21	8	4	0	0	0	0.0055674	1	11761	11761		155.58	62.389	1	2020500			10443	4438	6596	6626	10606	10606					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.815185546875	2	554.816064	1107.61758	-0.047009	-2.6081E-05	0.60137	0.00033365	0.55436	0.00030757	554.8162809985512	31.253	0.44632	31.253	31.109	31.555	0					22	10	3	0	0	0	0.0063888	1	11738	11738		152.06	38.649	1	1806000			10444	4438	6596	6626	10607	10607					0.06807165446002728
EYLTRHVI	8	Unmodified	_EYLTRHVI_					0	0	0		TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7877197265625	2	515.787641	1029.56073	1.221	0.00062976	-2.2087	-0.0011392	-0.98775	-0.00050947	515.7863489378475	16.983	0.21677	16.983	16.9	17.117	0					18	5	4	0	0	0	0.28427	1	4706	4706		87.754	13.78	1	652220			10445	5568	6597	6627	10608	10608					0.047131626801501625
EYLYPSII	8	Unmodified	_EYLYPSII_					0	0	0			REV__ENSG00000019549|ENST00000020945|SNAI2	REV__ENSG00000019549|ENST00000020945|SNAI2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2643737792969	2	499.265676	996.516799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.974	1	11.974	11.474	12.474	0								0	0	0	1.7419	1	2437	2437		19.36	1.0356	1		+		10446	12932	6598	6628	10609	10609					0.01840133463156235
EYMAQHLVF	9	Unmodified	_EYMAQHLVF_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000143093|Q5VSL9-3|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.273681640625	2	569.273509	1136.53247	3.4466	0.0019621	-2.8234	-0.0016073	0.62322	0.00035478	569.2717239812146	44.865	0.25484	44.865	44.782	45.036	0					16	10	2	0	0	0	0.14603	1	17985	17985		68.787	5.4806	1	97947			10447	4524	6599	6629	10610	10610					-0.03033903291475326
EYMDLMLPF	9	Unmodified	_EYMDLMLPF_					0	0	0			REV__nc|ENSG00000101557|P54578-2|USP14	REV__nc|ENSG00000101557|P54578-2|USP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7666625976562	2	579.764129	1157.5137	3.2514	0.0018851	0.87541	0.00050753	4.1269	0.0023926	579.7645712514515	39.299	0.27967	39.299	39.19	39.469	0					11	6	2	0	0	0	0.43426	1	15547	15547		38.806	1.647	1	204240	+		10448	13606	6600	6630	10611	10611					-0.058752009775389524
EYMKVQTEI	9	Unmodified	_EYMKVQTEI_					0	0	0		nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7843627929688	2	570.783907	1139.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.152	1	35.152	34.652	35.652	0								0	0	0	0.013195	1	13545	13545		163.15	53.031	1				10449	3985	6601	6631	10612	10612					-0.01093357702461617
EYMKVQTEI	9	Unmodified	_EYMKVQTEI_					0	0	0		nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7839965820312	2	570.783907	1139.55326	3.4159	0.0019497	-2.7048	-0.0015439	0.71105	0.00040586	570.7822126295943	35.153	0.21411	35.153	35.048	35.262	0					8	4	2	0	0	0	0.1424	1	13561	13561		69.628	0.8408	1	465580			10450	3985	6601	6631	10613	10613					-0.01093357702461617
EYMLQNHVF	9	Unmodified	_EYMLQNHVF_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.7759399414062	2	590.776416	1179.53828	3.181	0.0018792	-2.9425	-0.0017383	0.23851	0.0001409	590.7746846109743	42.578	0.19912	42.578	42.463	42.662	0					12	5	3	0	0	0	0.05357	1	16994	16994		94.006	30.7	1	110480			10451	7746	6602	6632	10614	10614					-0.04430804779804021
EYMSDRGLAL	10	Unmodified	_EYMSDRGLAL_					0	0	0		nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.78076171875	2	577.779156	1153.54376	-0.0096609	-5.5818E-06	-0.37748	-0.0002181	-0.38714	-0.00022368	577.7786714801623	34.939	0.1466	34.939	34.849	34.996	0					9	6	2	0	0	0	0.58189	1	11791	11791		36.447	1.2947	1	52933			10452	7453	6603	6633	10615	10615					-0.02687125987949912
EYNINDKKI	9	Unmodified	_EYNINDKKI_					0	0	0		tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.8010864257812	2	568.800946	1135.58734	0.10997	6.2549E-05	0.43559	0.00024776	0.54555	0.00031031	568.8011113454421	29.434	0.18634	29.434	29.357	29.543	0					17	7	3	0	0	0	0.07136	1	9575	9575		87.696	18.069	1	146710			10453	22762	6604	6634	10616	10616					0.02496806780800398
EYNINDKKI	9	Unmodified	_EYNINDKKI_					0	0	0		tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.8023071289062	2	568.800946	1135.58734	0.66352	0.00037741	-0.42769	-0.00024327	0.23583	0.00013414	568.8008417878766	29.464	0.13476	29.464	29.379	29.513	0					8	3	3	0	0	0	0.098791	1	9908	9908		79.713	7.8351	1	177980			10454	22762	6604	6634	10617	10617					0.02496806780800398
EYNINDKKI	9	Unmodified	_EYNINDKKI_					0	0	0		tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.8012084960938	2	568.800946	1135.58734	-1.2954	-0.00073683	1.3659	0.00077693	0.070505	4.0103E-05	568.8017512155558	29.451	0.17149	29.451	29.367	29.539	0					6	4	2	0	0	0	0.16002	1	9918	9918		66.429	18.772	1	149560			10455	22762	6604	6634	10618	10618					0.02496806780800398
EYNKSWQTF	9	Unmodified	_EYNKSWQTF_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.7771606445312	2	601.77747	1201.54039	-0.25174	-0.00015149	0.21814	0.00013127	-0.033609	-2.0225E-05	601.7775567722725	37.388	0.32195	37.388	37.316	37.638	0					19	9	3	0	0	0	0.098791	1	14174	14174		79.713	13.283	1	205970			10456	7562	6605	6635	10619	10619					-0.05232052770338669
EYNKSWQTF	9	Unmodified	_EYNKSWQTF_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.77685546875	2	601.77747	1201.54039	-0.58511	-0.0003521	0.91158	0.00054857	0.32648	0.00019647	601.7776298366263	37.195	0.1174	37.195	37.114	37.231	0					12	6	3	0	0	0	0.21263	1	12575	12575		60.118	14.146	1	77942			10457	7562	6605	6635	10620	10620					-0.05232052770338669
EYNKSWQTF	9	Unmodified	_EYNKSWQTF_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.7776489257812	2	601.77747	1201.54039	0.85993	0.00051749	-0.54844	-0.00033004	0.31149	0.00018745	601.7770185514925	37.38	0.39697	37.38	37.262	37.659	0					28	12	4	0	0	0	0.0049871	1	14615	14615		158.07	61.884	1	422670			10458	7562	6605	6635	10621	10621					-0.05232052770338669
EYNKSWQTF	9	Unmodified	_EYNKSWQTF_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.77734375	2	601.77747	1201.54039	0.46368	0.00027903	-1.261	-0.00075883	-0.7973	-0.0004798	601.777042344346	37.153	0.083267	37.153	37.095	37.178	0					6	4	2	0	0	0	0.18416	1	13302	13302		63.534	20.67	1	46799			10459	7562	6605	6635	10622	10622					-0.05232052770338669
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2679443359375	2	575.269813	1148.52507	-0.099001	-5.6952E-05	0.48985	0.0002818	0.39085	0.00022485	575.2698282563045	38.687	0.48918	38.687	38.577	39.066	0					42	19	3	0	0	0	0.41354	1	14682	14682		40.573	7.7602	1	1097800			10460	4949	6606	6636	10623	10623					-0.0432491956753438
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.2698364257812	2	575.269813	1148.52507	1.8755	0.0010789	-1.0655	-0.00061296	0.80999	0.00046596	575.2689191059976	38.653	0.49201	38.653	38.532	39.024	0					62	17	5	0	0	0	0.011305	1	15153	15153		138.24	94.125	1	3368900			10461	4949	6606	6636	10624	10624					-0.0432491956753438
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.2701416015625	2	575.269813	1148.52507	0.60114	0.00034582	0.6654	0.00038278	1.2665	0.0007286	575.2702171426579	38.415	0.29074	38.415	38.338	38.629	0					27	14	3	0	0	0	0.015338	1	13733	13733		129.68	74.178	1	274390			10462	4949	6606	6636	10625	10625					-0.0432491956753438
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2698974609375	2	575.269813	1148.52507	3.3191	0.0019094	-2.0931	-0.0012041	1.226	0.00070529	575.2680991127609	38.619	0.64417	38.619	38.466	39.11	0					50	13	5	0	0	0	0.0024202	1	15184	15184		172.03	103.24	1	4218000			10463	4949	6606	6636	10626	10626					-0.0432491956753438
EYNSDLHQF	9	Unmodified	_EYNSDLHQF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.7518310546875	2	576.751453	1151.48835	0.91307	0.00052661	-0.91381	-0.00052704	-0.00073704	-4.2509E-07	576.7505359738478	32.805	0.11062	32.805	32.749	32.86	0					6	4	2	0	0	0	0.25716	1	10622	10622		54.776	10.66	1	42912			10464	330	6607	6637	10627	10627					-0.08133216184091907
EYNSDLHQF	9	Unmodified	_EYNSDLHQF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.751708984375	2	576.751453	1151.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.082	1	33.082	32.582	33.582	0								0	0	0	0.0059645	1	12631	12631		176.44	54.269	1				10465	330	6607	6637	10628	10628					-0.08133216184091907
EYNSDLHQF	9	Unmodified	_EYNSDLHQF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.7516479492188	2	576.751453	1151.48835	0.59383	0.00034249	-0.25541	-0.00014731	0.33842	0.00019519	576.751563278332	32.828	0.17802	32.828	32.762	32.94	0					7	4	2	0	0	0	0.063171	1	11461	11461		90.601	15.558	1	67886			10466	330	6607	6637	10629	10629					-0.08133216184091907
EYNSDLHQF	9	Unmodified	_EYNSDLHQF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.7518920898438	2	576.751453	1151.48835	-1.5902	-0.00091717	2.3744	0.0013695	0.7842	0.00045229	576.7529685594407	32.846	0.17661	32.846	32.751	32.927	0					7	4	2	0	0	0	0.19605	1	11455	11455		62.107	19.711	1	128960			10467	330	6607	6637	10630	10630					-0.08133216184091907
EYNSDLHQF	9	Unmodified	_EYNSDLHQF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.7509155273438	2	576.751453	1151.48835	1.7029	0.00098216	-1.8392	-0.0010608	-0.1363	-7.8611E-05	576.7498907085137	33.011	0.15028	33.011	32.909	33.059	0					8	3	3	0	0	0	0.0067848	1	12512	12512		150.36	68.121	1	531100			10468	330	6607	6637	10631	10631					-0.08133216184091907
EYNSDLHQF	9	Unmodified	_EYNSDLHQF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.7516479492188	2	576.751453	1151.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.016	1	33.016	32.516	33.516	0								0	0	0	0.0011098	1	12503	12503		190.26	88.661	1				10469	330	6607	6637	10632	10632					-0.08133216184091907
EYNTVASKF	9	Unmodified	_EYNTVASKF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.761474609375	2	529.761289	1057.50803	0.11419	6.0494E-05	-0.876	-0.00046407	-0.76181	-0.00040357	529.7604184842445	31.693	0.41751	31.693	31.601	32.018	0					24	10	4	0	0	0	0.011389	1	11568	11568		138.06	41.872	1	1722600			10470	6411	6608	6638	10633	10633					-0.018428401733444844
EYNTVASKF	9	Unmodified	_EYNTVASKF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7605590820312	2	529.761289	1057.50803	0.032996	1.748E-05	-1.6999	-0.00090056	-1.6669	-0.00088308	529.7602407691905	31.503	0.075659	31.503	31.454	31.529	0					6	3	2	0	0	0	0.10915	1	10438	10438		77.318	11.514	1	120100			10471	6411	6608	6638	10634	10634					-0.018428401733444844
EYNTVASKF	9	Unmodified	_EYNTVASKF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.76123046875	2	529.761289	1057.50803	0.41913	0.00022204	-0.46075	-0.00024409	-0.041622	-2.205E-05	529.7611704637192	31.496	0.19424	31.496	31.416	31.611	0					12	7	2	0	0	0	0.12834	1	10427	10427		72.879	19.528	1	119540			10472	6411	6608	6638	10635	10635					-0.018428401733444844
EYNTVASKF	9	Unmodified	_EYNTVASKF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7600708007812	2	529.761289	1057.50803	1.7353	0.00091929	-3.8516	-0.0020405	-2.1164	-0.0011212	529.7587878795372	31.71	0.20774	31.71	31.653	31.861	0					7	4	2	0	0	0	0.063171	1	11994	11994		90.601	19.223	1	946710			10473	6411	6608	6638	10636	10636					-0.018428401733444844
EYNTVASKF	9	Unmodified	_EYNTVASKF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7614135742188	2	529.761289	1057.50803	0.28658	0.00015182	-0.25591	-0.00013557	0.030669	1.6247E-05	529.7611746198928	31.693	0.30696	31.693	31.638	31.945	0					13	6	3	0	0	0	0.0030642	1	11986	11986		168.26	82.899	1	788080			10474	6411	6608	6638	10637	10637					-0.018428401733444844
EYNTVASKF	9	Unmodified	_EYNTVASKF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7604370117188	2	529.761289	1057.50803	-1.1902	-0.00063051	-0.39676	-0.00021019	-1.5869	-0.0008407	529.7610883086826	31.471	0.17384	31.471	31.42	31.593	0					10	4	3	0	0	0	0.078509	1	10844	10844		85.161	33.825	1	369840			10475	6411	6608	6638	10638	10638					-0.018428401733444844
EYPDRIMNTF	10	Oxidation (M)	_EYPDRIM(Oxidation (M))NTF_		EYPDRIM(1)NTF		EYPDRIM(50)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB2B|p.S168N|1|0.15|ENSG00000137285|chr6:3225586-3225586|C/T|missense_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	651.2948608398438	2	651.29517	1300.57579	0.23074	0.00015028	-0.45567	-0.00029678	-0.22493	-0.0001465	651.2947601384775	36.16	0.27083	36.16	36.035	36.306	0					26	13	3	0	0	0	0.46128	1	11841	11841		49.536	22.489	1	57552			10476	7342	6609	6639	10639	10639		294			-0.06247758304857598
EYPDRIMNTF	10	Oxidation (M)	_EYPDRIM(Oxidation (M))NTF_		EYPDRIM(1)NTF		EYPDRIM(190)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB2B|p.S168N|1|0.15|ENSG00000137285|chr6:3225586-3225586|C/T|missense_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	651.2948608398438	2	651.29517	1300.57579	0.17627	0.0001148	-0.43979	-0.00028643	-0.26351	-0.00017163	651.2949429540645	36.419	0.552	36.419	36.161	36.713	0					36	15	4	0	0	0	0.00017198	1	13720	13720		190.62	94.589	1	541310			10477	7342	6609	6639	10640	10640		294			-0.06247758304857598
EYPDRIMNTF	10	Oxidation (M)	_EYPDRIM(Oxidation (M))NTF_		EYPDRIM(1)NTF		EYPDRIM(130)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB2B|p.S168N|1|0.15|ENSG00000137285|chr6:3225586-3225586|C/T|missense_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	651.2947998046875	2	651.29517	1300.57579	-0.76111	-0.00049571	0.20033	0.00013047	-0.56078	-0.00036523	651.2953824387286	36.414	0.29464	36.414	36.302	36.597	0					14	8	2	0	0	0	0.018513	1	14171	14171		126.24	56.615	1	156460			10478	7342	6609	6639	10641	10641		294			-0.06247758304857598
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB2B|p.S168N|1|0.15|ENSG00000137285|chr6:3225586-3225586|C/T|missense_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	643.2982788085938	2	643.297713	1284.58087	0.57441	0.00036951	-0.22373	-0.00014393	0.35067	0.00022559	643.2974030737313	43.447	0.29733	43.447	43.281	43.578	0					33	17	2	0	0	0	0.50287	1	16361	16361		45.022	12.21	1	112670			10479	7342	6609	6640	10642	10642					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB2B|p.S168N|1|0.15|ENSG00000137285|chr6:3225586-3225586|C/T|missense_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	643.2987060546875	2	643.297713	1284.58087	1.8684	0.0012019	-0.82269	-0.00052923	1.0457	0.00067271	643.2972340902332	43.382	0.39732	43.382	43.183	43.58	0					54	21	3	0	0	0	0.03454	1	16948	16948		114.89	35.182	1	165820			10480	7342	6609	6640	10643	10643					-0.050034544422260296
EYPGDDLHAL	10	Unmodified	_EYPGDDLHAL_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.2621459960938	2	565.261653	1128.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.285	1	28.285	27.785	28.785	0								0	0	0	0.20728	1	9104	9104		63.306	1.1989	1		+		10481	21030	6610	6641	10644	10644					-0.050360455242980606
EYPTETLT	8	Unmodified	_EYPTETLT_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2273254394531	2	477.226748	952.438943	-0.63864	-0.00030478	1.4963	0.00071407	0.85765	0.00040929	477.2276079358701	22.147	0.36703	22.147	21.84	22.207	0					17	7	3	0	0	0	0.70055	1	7334	7334		33.516	0	1	632800	+		10482	16839	6611	6642	10645	10645					-0.03917924192887767
EYQFTGTY	8	Unmodified	_EYQFTGTY_					0	0	0		ENST00000504256.5_1_4:25418140-25418221:+|nuORF;ENST00000506973.1_1_4:25418140-25419370:+|nuORF;ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4	ENST00000504256.5_1_4:25418140-25418221:+|nuORF	ENST00000504256.5_1_4:25418140-25418221:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.717529296875	2	504.71909	1007.42363	-2.002	-0.0010104	-1.9551	-0.00098678	-3.9571	-0.0019972	504.7181441724257	23.914	0.20672	23.914	23.828	24.035	0					10	5	3	0	0	0	0.61938	1	7368	7368		45.952	5.3793	1	83428			10483	1263	6612	6643	10646	10646					-0.07978790990091511
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.80126953125	2	568.800946	1135.58734	1.1543	0.00065655	-0.50079	-0.00028485	0.65349	0.0003717	568.8005124041683	31.907	0.082718	31.907	31.839	31.921	0					6	3	2	0	0	0	0.18416	1	10270	10270		63.534	14.092	1	90347			10484	4831	6613	6644	10647	10647					0.02496806780800398
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.80126953125	2	568.800946	1135.58734	0.11734	6.6741E-05	0.61221	0.00034822	0.72954	0.00041496	568.8012773467892	32.135	0.29354	32.135	32.048	32.342	0					15	7	3	0	0	0	1.8411E-08	1	11774	11774		218.73	71.945	1	617850			10485	4831	6613	6644	10648	10648					0.02496806780800398
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.8010864257812	2	568.800946	1135.58734	1.9628	0.0011164	-1.457	-0.00082877	0.50576	0.00028768	568.7999043775192	32.134	0.25648	32.134	32.032	32.289	0					8	5	2	0	0	0	0.15163	1	12198	12198		67.494	16.301	1	331500			10486	4831	6613	6644	10649	10649					0.02496806780800398
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.80126953125	2	568.800946	1135.58734	0.20906	0.00011891	0.42678	0.00024275	0.63584	0.00036167	568.801068410189	32.117	0.16105	32.117	32.064	32.225	0					7	3	3	0	0	0	0.063823	1	12186	12186		90.37	23.941	1	276810			10487	4831	6613	6644	10650	10650					0.02496806780800398
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.8004760742188	2	568.800946	1135.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.937	1	31.937	31.437	32.437	0								0	0	0	0.040385	1	11052	11052		90.601	33.88	1				10488	4831	6613	6644	10651	10651					0.02496806780800398
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.2671508789062	2	543.266739	1084.51892	1.8458	0.0010028	-0.4076	-0.00022143	1.4382	0.00078133	543.2666668391231	27.502	0.32612	27.502	27.401	27.727	0					21	10	3	0	0	0	0.0049871	1	8478	8478		158.07	33.994	1	535310			10489	6747	6614	6645	10652	10652					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.2675170898438	2	543.266739	1084.51892	1.8808	0.0010218	-0.6632	-0.00036029	1.2176	0.00066149	543.2663689330683	27.754	0.43074	27.754	27.623	28.054	0					31	10	5	0	0	0	1.204E-12	1	9721	9721		223.88	46.573	1	3168600			10490	6747	6614	6645	10653	10653					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2669067382812	2	543.266739	1084.51892	0.32799	0.00017819	0.32999	0.00017927	0.65798	0.00035746	543.2670199631938	27.498	0.27013	27.498	27.412	27.682	0					24	9	4	0	0	0	0.035062	1	8759	8759		104.06	21.306	1	599000			10491	6747	6614	6645	10654	10654					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.26708984375	2	543.266739	1084.51892	2.0169	0.0010957	-1.1466	-0.0006229	0.8703	0.00047281	543.2661047781357	27.756	0.40577	27.756	27.649	28.055	0					23	8	4	0	0	0	3.691E-27	1	10102	10102		254.98	77.674	1	3438400			10492	6747	6614	6645	10655	10655					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.2680053710938	2	543.266739	1084.51892	2.0673	0.0011231	-0.12382	-6.7266E-05	1.9435	0.0010558	543.266820064625	27.557	0.18287	27.557	27.505	27.688	0					7	4	2	0	0	0	0.0016668	1	9039	9039		176.44	29.659	1	99166			10493	6747	6614	6645	10656	10656					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.2675170898438	2	543.266739	1084.51892	1.0789	0.00058613	0.25026	0.00013596	1.3292	0.00072209	543.2669617140881	27.576	0.34539	27.576	27.454	27.799	0					16	8	3	0	0	0	0.0080613	1	9032	9032		145.16	38.473	1	473460			10494	6747	6614	6645	10657	10657					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.2672119140625	2	543.266739	1084.51892	-1.4905	-0.00080973	3.0046	0.0016323	1.5141	0.00082257	543.268301976646	27.572	0.21787	27.572	27.483	27.701	0					10	5	3	0	0	0	0.056004	1	9042	9042		93.143	12.689	1	207970			10495	6747	6614	6645	10658	10658					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2671508789062	2	543.266739	1084.51892	0.60931	0.00033102	0.31654	0.00017197	0.92586	0.00050299	543.2668661166758	27.699	0.26724	27.699	27.611	27.878	0					18	5	4	0	0	0	5.6624E-19	1	9939	9939		239.13	53.408	1	1320300			10496	6747	6614	6645	10659	10659					-0.019954377990416106
EYQLSTLEM	9	Unmodified	_EYQLSTLEM_					0	0	0		CON__Q9D312	CON__Q9D312	CON__Q9D312	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.26025390625	2	557.260265	1112.50598	0.11788	6.5691E-05	-1.1813	-0.00065828	-1.0634	-0.00059259	557.2597165915136	32.01	0.14409	32.01	31.933	32.077	0					11	5	3	0	0	0	0.12239	1	10664	10664		74.255	8.4519	1	186070		+	10497	670	6615	6646	10660	10660					-0.04577636973453991
EYREKQRRREE	11	Unmodified	_EYREKQRRREE_					0	0	0			REV__ENSG00000125351|ENST00000276201|UPF3B	REV__ENSG00000125351|ENST00000276201|UPF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2764282226562	3	526.94136	1577.80225	0.63958	0.00033702	1.0274	0.00054136	1.6669	0.00087838	527.2755379212533	36.487	0.16594	36.487	36.379	36.545	0					7	3	3	0	0	0	0.80453	1	14198	14198		14.086	3.4992	1	130380	+		10498	14426	6616	6647	10661	10661					0.03646121578481143
EYRELMENIE	10	Unmodified	_EYRELMENIE_					0	0	0		tr|U7T5J2|U7T5J2_FUSNUPhagetailproteinIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00077PE=4SV=1	tr|U7T5J2|U7T5J2_FUSNUPhagetailproteinIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00077PE=4SV=1	tr|U7T5J2|U7T5J2_FUSNUPhagetailproteinIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00077PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	663.3081665039062	2	663.305735	1324.59692	2.048	0.0013584	0.58038	0.00038497	2.6283	0.0017434	663.3062488735416	21.333	0.21619	21.333	21.225	21.441	0					14	4	4	0	0	0	0.47859	1	7049	7049		47.657	0	1	1574900			10499	23013	6617	6648	10662	10662					-0.05239792995962489
EYRGQSEASKM	11	Oxidation (M)	_EYRGQSEASKM(Oxidation (M))_		EYRGQSEASKM(1)		EYRGQSEASKM(75)	0	0	1			REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	651.2952270507812	2	651.293159	1300.57176	2.1124	0.0013758	1.0712	0.00069767	3.1836	0.0020735	651.2940693850737	36.394	0.51177	36.394	36.172	36.684	0					39	14	4	0	0	0	0.1937	1	14190	14190		75.043	11.509	1	460330	+		10500	14549	6618	6649	10663	10663		552			-0.06649847798576047
EYRGQSEASKM	11	Oxidation (M)	_EYRGQSEASKM(Oxidation (M))_		EYRGQSEASKM(1)		EYRGQSEASKM(85)	0	0	1			REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	651.295166015625	2	651.293159	1300.57176	2.8134	0.0018324	0.033357	2.1725E-05	2.8468	0.0018541	651.2933221939601	36.361	0.86655	36.361	36.047	36.914	0					46	17	4	0	0	0	0.11858	1	14086	14086		85.161	23.053	1	1615000	+		10501	14549	6618	6649	10664	10664		552			-0.06649847798576047
EYRRRTSA	8	Unmodified	_EYRRRTSA_					0	0	0			REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7770385742188	2	519.775597	1037.53664	1.6556	0.00086055	0.96424	0.00050119	2.6199	0.0013617	519.776222275091	30.136	0.37399	30.136	30.042	30.416	0					16	8	4	0	0	0	0.58597	1	11227	11227		51.335	51.335	1	1065600	+		10502	14528	6619	6650	10665	10665					0.019373222464764694
EYRTGISWS	9	Unmodified	_EYRTGISWS_					0	0	0		sp|Q6SW43|GM_HCMVMEnvelopeglycoproteinMOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gMPE=3SV=1;sp|P16733|GM_HCMVAEnvelopeglycoproteinMOS=Humancytomegalovirus(strainAD169)OX=10360GN=gMPE=1SV=1	sp|Q6SW43|GM_HCMVMEnvelopeglycoproteinMOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gMPE=3SV=1	sp|Q6SW43|GM_HCMVMEnvelopeglycoproteinMOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gMPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.766357421875	2	549.764363	1097.51417	3.7629	0.0020687	0.20387	0.00011208	3.9667	0.0021808	549.7645655195005	31.496	0.45973	31.496	31.292	31.751	0					25	9	6	0	0	0	0.24334	1	11766	11766		58.782	58.782	1	4864700			10503	22468	6620	6651	10666	10666					-0.030683219418278895
EYSFGLIHAL	10	Unmodified	_EYSFGLIHAL_					0	0	0			REV__nc|ENSG00000163873|Q13003-2|GRIK3	REV__nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2992553710938	2	575.300581	1148.58661	-0.10006	-5.7563E-05	-2.3798	-0.0013691	-2.4799	-0.0014267	575.2994329880509	41.184	0.10975	41.184	41.115	41.225	0					7	5	2	0	0	0	0.61887	1	15664	15664		31.955	2.7848	1	73804	+		10504	15928	6621	6652	10667	10667					0.01826012131778043
EYSGINGMI	9	Unmodified	_EYSGINGMI_					0	0	0		tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.22943115234375	2	492.228768	982.442982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.896	1	29.896	29.396	30.396	0								0	0	0	0.36609	1	9474	9474		20.947	2.6225	1				10505	22696	6622	6653	10668	10668					-0.04894157970829838
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.7926635742188	2	608.792598	1215.57064	0.15634	9.5182E-05	-0.15942	-9.7055E-05	-0.0030772	-1.8734E-06	608.7926394987453	24.059	0.52728	24.059	23.946	24.474	0					39	16	5	0	0	0	0.0071053	1	7033	7033		148.99	94.21	1	1238100			10506	2984;7383	6623	6654	10669	10669					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.1974792480469	3	406.197491	1215.57064	0.97502	0.00039605	-1.5202	-0.00061748	-0.54514	-0.00022143	406.1970872647761	24.316	1.2891	24.316	24.22	25.509	0					73	30	5	0	0	0	0.53083	1	8178	8178		36.447	15.61	1	9883500			10507	2984;7383	6623	6654	10670	10670					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.7922973632812	2	608.792598	1215.57064	-0.65215	-0.00039702	0.17169	0.00010453	-0.48045	-0.0002925	608.7927629790939	24.303	1.0375	24.303	24.204	25.242	0					61	24	5	0	0	0	5.293E-08	1	8170	8170		209.84	144.37	1	9950300			10508	2984;7383	6623	6654	10671	10671					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	608.7927856445312	2	608.792598	1215.57064	-0.61943	-0.0003771	0.47302	0.00028797	-0.14641	-8.9132E-05	608.7929456907546	24.058	0.54327	24.058	23.991	24.534	0					35	17	4	0	0	0	0.0071053	1	7304	7304		148.99	90.205	1	1482100			10509	2984;7383	6623	6654	10672	10672					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	608.7926025390625	2	608.792598	1215.57064	0.45649	0.00027791	-0.89524	-0.00054502	-0.43875	-0.00026711	608.7920886073294	24.059	0.17102	24.059	23.979	24.15	0					10	5	3	0	0	0	0.37197	1	7313	7313		44.117	13.799	1	133990			10510	2984;7383	6623	6654	10673	10673					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.7926025390625	2	608.792598	1215.57064	0.52819	0.00032156	-0.55753	-0.00033942	-0.029343	-1.7864E-05	608.7921892983616	24.286	0.36539	24.286	24.18	24.545	0					12	7	3	0	0	0	0.021961	1	8492	8492		118.74	69.302	1	986330			10511	2984;7383	6623	6654	10674	10674					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.19744873046875	3	406.197491	1215.57064	-0.56599	-0.00022991	-0.0763	-3.0993E-05	-0.64229	-0.0002609	406.19761828266627	24.287	1.5539	24.287	24.13	25.684	0					73	31	4	0	0	0	0.39215	1	8341	8341		49.536	19.985	1	14127000			10512	2984;7383	6623	6654	10675	10675					-0.028520173767901724
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(42)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.7902221679688	2	616.790055	1231.56556	-0.48625	-0.00029991	0.79412	0.00048981	0.30787	0.00018989	616.7905366981096	19.439	0.52982	19.439	19.339	19.869	0					21	12	2	0	0	0	0.39215	1	5875	5875		42.396	13.247	1	572340			10513	2984;7383	6623	6655	10676	10676		130			-0.04096321239421741
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(120)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.7901000976562	2	616.790055	1231.56556	1.0709	0.00066054	-1.1278	-0.00069563	-0.056893	-3.5091E-05	616.7895512539295	19.372	1.1662	19.372	19.214	20.38	0					51	23	4	0	0	0	0.020824	1	6123	6123		120.62	60.503	1	2429300			10514	2984;7383	6623	6655	10677	10677		130			-0.04096321239421741
EYSKYARNW	9	Unmodified	_EYSKYARNW_					0	0	0		ENST00000578272.1_1_18:51686220-51690905:-|nuORF	ENST00000578272.1_1_18:51686220-51690905:-|nuORF	ENST00000578272.1_1_18:51686220-51690905:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	608.7926025390625	2	608.790912	1215.56727	2.9227	0.0017793	-0.42181	-0.0002568	2.5009	0.0015225	608.7906810436681	24.254	1.0995	24.254	24.147	25.247	0					55	22	3	0	0	0	0.03984	1	8331	8331		99.375	17.134	1	16516000			10515	10850	6624	6656	10678	10678					-0.03188944159160201
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	638.8138427734375	2	638.814053	1275.61355	3.0004	0.0019167	-2.7703	-0.0017697	0.23009	0.00014699	638.8126066540868	41.279	0.14233	41.279	41.214	41.357	0					5	3	2	0	0	0	0.62235	1	16434	16434		31.53	2.3598	1	49483			10516	5490	6625	6657	10679	10679					-0.013229240477357962
EYSYEQFLF	9	Unmodified	_EYSYEQFLF_					0	0	0		nc|ENSG00000095303|P23219-4|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1	nc|ENSG00000095303|P23219-4|PTGS1	nc|ENSG00000095303|P23219-4|PTGS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	613.2764892578125	2	613.274229	1224.53391	2.9846	0.0018304	0.83492	0.00051203	3.8195	0.0023424	613.274808317081	43.588	0.44047	43.588	43.485	43.925	0					34	13	4	0	0	0	0.53083	1	17420	17420		29.15	2.3535	1	615510			10517	1898	6626	6658	10680	10680					-0.06937990721712595
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.3005065917969	2	511.30005	1020.58555	1.0057	0.0005142	0.21722	0.00011106	1.2229	0.00062527	511.3001350531149	43.426	0.32987	43.426	43.372	43.702	0					29	19	2	0	0	0	0.036372	1	16379	16379		102.77	23.322	1	340500			10518	1878	6627	6659	10681	10681					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.299560546875	2	511.30005	1020.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.237	1	43.237	42.737	43.737	0								0	0	0	0.10121	1	15008	15008		71.296	15.791	1				10519	1878	6627	6659	10682	10682					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.3003234863281	2	511.30005	1020.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.263	1	43.263	42.763	43.763	0								0	0	0	0.28164	1	15014	15014		38.806	1.647	1				10520	1878	6627	6659	10683	10683					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.3009948730469	2	511.30005	1020.58555	0.022676	1.1594E-05	0.76051	0.00038885	0.78319	0.00040044	511.30042650657236	43.376	0.33236	43.376	43.247	43.579	0					26	12	3	0	0	0	0.015338	1	17347	17347		129.68	31.053	1	696470			10521	1878	6627	6659	10684	10684					0.07607797762852897
EYTIWQAK	8	Unmodified	_EYTIWQAK_					0	0	0			REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2673950195312	2	519.766374	1037.5182	1.6157	0.00083977	-0.43371	-0.00022543	1.182	0.00061434	519.7659841862028	34.648	1.0033	34.648	34.327	35.33	0					58	20	4	0	0	0	0.63077	2	13230	13230;13253		44.117	1.9584	1	5177300	+		10522	16982	6628	6660	10685;10686	10685					0.0009376755190260155
EYTLMRATF	9	Unmodified	_EYTLMRATF_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.2787475585938	2	566.278792	1130.54303	1.6944	0.0009595	-1.3794	-0.00078111	0.31503	0.0001784	566.2780296297648	43.891	0.1815	43.891	43.837	44.018	0					14	6	3	0	0	0	0.01873	1	17585	17585		124.08	50.105	1	120060			10523	7116	6629	6661	10687	10687					-0.017019206370378015
EYTLMRATF	9	Unmodified	_EYTLMRATF_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.279052734375	2	566.278792	1130.54303	3.4708	0.0019654	-2.5199	-0.001427	0.95094	0.0005385	566.2773884011226	43.909	0.30473	43.909	43.727	44.032	0					19	10	3	0	0	0	0.02953	1	17581	17581		109.48	48.506	1	209940			10524	7116	6629	6661	10688	10688					-0.017019206370378015
EYTQCIYAL	9	Unmodified	_EYTQCIYAL_					0	0	0			REV__ENST00000473626.1_1_2:219457053-219457431:+|nuORF	REV__ENST00000473626.1_1_2:219457053-219457431:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2576904296875	2	552.257525	1102.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.04	1	40.04	39.54	40.54	0								0	0	0	0.23459	1	15768	15768		45.952	1.8352	1		+		10525	15237	6630	6662	10689	10689					-0.04665315765282685
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.R1279C|1|0.9|ENSG00000113522|chr5:132642260-132642260|C/T|missense_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	623.8255004882812	2	623.826963	1245.63937	-0.41859	-0.00026113	0.49887	0.00031121	0.080275	5.0078E-05	623.8270138794588	36.958	0.15044	36.958	36.864	37.015	0					6	4	2	0	0	0	0.30841	1	13981	13981		49.536	22.843	1	76826			10526	2806	6631	6663	10690	10690					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.R1279C|1|0.9|ENSG00000113522|chr5:132642260-132642260|C/T|missense_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	623.8267211914062	2	623.826963	1245.63937	0.46681	0.00029121	-0.61826	-0.00038569	-0.15145	-9.4476E-05	623.826489518205	36.871	0.50746	36.871	36.761	37.268	0					21	10	3	0	0	0	0.085655	1	14358	14358		82.75	26.029	1	699600			10527	2806	6631	6663	10691	10691					0.02637970194564332
EYVEQPLRG	9	Unmodified	_EYVEQPLRG_					0	0	0			REV__ENST00000571422.1_1_17:44337721-44337880:-|nuORF	REV__ENST00000571422.1_1_17:44337721-44337880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7813720703125	2	545.780013	1089.54547	3.7588	0.0020515	-0.10734	-5.8582E-05	3.6515	0.0019929	545.7801667239918	46.084	1.4738	46.084	45.341	46.815	0					143	64	4	0	0	0	0.41113	1	18269	18269		40.778	11.608	1	738900	+		10528	20381	6632	6664	10692	10692					0.004282510922621441
EYVHIKHTL	9	Unmodified	_EYVHIKHTL_					0	0	0			REV__PON1|p.A242T|1|0.38|ENSG00000005421|chr7:95306341-95306341|C/T|missense_variant	REV__PON1|p.A242T|1|0.38|ENSG00000005421|chr7:95306341-95306341|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	380.5440673828125	3	380.545108	1138.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.995	1	30.995	30.495	31.495	0								0	0	0	0.36609	1	10622	10622		20.947	0.95016	1		+		10529	21399	6633	6665	10693	10693					0.04973120742965875
EYVKQTWNL	9	Unmodified	_EYVKQTWNL_					0	0	0		SYK|p.E442Sfs*31|1|0.11|ENSG00000165025|chr9:90877711-90877711|C/-|frameshift_variant;SYK|p.S553Afs*9|1|0.05|ENSG00000165025|chr9:90887821-90887821|A/-|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	SYK|p.E442Sfs*31|1|0.11|ENSG00000165025|chr9:90877711-90877711|C/-|frameshift_variant	SYK|p.E442Sfs*31|1|0.11|ENSG00000165025|chr9:90877711-90877711|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.8035888671875	2	590.803488	1179.59242	-0.095846	-5.6626E-05	0.60946	0.00036007	0.51361	0.00030344	590.8037773796987	39.202	0.33208	39.202	39.096	39.428	0					24	11	4	0	0	0	0.00026591	1	15393	15393		190.26	78.613	1	311120			10530	5751	6634	6666	10694	10694					0.00981110643442662
EYVSLLRK	8	Unmodified	_EYVSLLRK_					0	0	0			REV__ENSG00000154143|ENST00000284288|PANX3	REV__ENSG00000154143|ENST00000284288|PANX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.53432	1006.58113	0.24139	8.1235E-05	-0.49185	-0.00016553	-0.25047	-8.429E-05	336.53416737422936	23.051	0.79075	23.051	22.804	23.595	0					35	25	2	0	0	0	0.79882	1	6599	6599		21.96	1.013	1	120700	+		10531	15559	6635	6667	10695	10695					0.07810333339955378
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2860107421875	2	561.284931	1120.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.262	1	42.262	41.762	42.762	0								0	0	0	0.15451	1	16856	16856		58.782	9.3404	1				10532	3549	6636	6668	10696	10696					-0.00014560902332050318
EYVTIGAGIV	10	Unmodified	_EYVTIGAGIV_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2814025878906	2	511.281857	1020.54916	1.0046	0.00051365	-0.12192	-6.2335E-05	0.8827	0.00045131	511.2816791662341	34.457	0.17268	34.457	34.372	34.545	0					7	4	2	0	0	0	0.52707	1	12849	12849		42.396	1.618	1	89180	+		10533	12871	6637	6669	10697	10697					0.03970920866140659
EYVVRTFTL	9	Unmodified	_EYVVRTFTL_					0	0	0		PTPRK|p.Y1034Tfs*61|1|0.4|ENSG00000152894|chr6:127985870-127985870|C/-|frameshift_variant;PTPRK|p.L1219*|2|0.16|ENSG00000152894|chr6:127981168-127981168|A/-|frameshift_variant;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	PTPRK|p.Y1034Tfs*61|1|0.4|ENSG00000152894|chr6:127985870-127985870|C/-|frameshift_variant	PTPRK|p.Y1034Tfs*61|1|0.4|ENSG00000152894|chr6:127985870-127985870|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.3084106445312	2	564.308406	1126.60226	3.4703	0.0019583	-2.5801	-0.001456	0.89024	0.00050237	564.808333149098	45.163	0.26878	45.163	45.078	45.346	0					15	12	2	0	0	0	0.35021	1	18080	18080		45.972	14.017	1	113170			10534	5024	6638	6670	10698	10698					0.04402298648801661
EYWEAIGGTF	10	Unmodified	_EYWEAIGGTF_					0	0	0			REV__ENSG00000162909|ENST00000295006|CAPN2	REV__ENSG00000162909|ENST00000295006|CAPN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.7644653320312	2	586.766571	1171.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.752	1	11.752	11.252	12.252	0								0	0	0	0.41253	1	2329	2329		26.693	2.1737	1		+		10535	15846	6639	6671	10699	10699					-0.06030857518931043
EYWSKIKCK	9	Unmodified	_EYWSKIKCK_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;ENST00000528828.1_1_8:38133161-38137268:-|nuORF	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.811279296875	2	592.810259	1183.60597	1.5348	0.00090987	0.34892	0.00020684	1.8838	0.0011167	592.8104394023003	12.475	0.3373	12.475	12.384	12.721	0					23	8	4	0	0	0	0.13726	1	2825	2825		74.255	17.534	1	8353400			10536	4788	6640	6672	10700	10700					0.021506451510049374
EYYALPQAR	9	Unmodified	_EYYALPQAR_					0	0	0			REV__ENSG00000166133|ENST00000315616|RPUSD2	REV__ENSG00000166133|ENST00000315616|RPUSD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.7855224609375	2	555.782556	1109.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.985	1	20.985	20.485	21.485	0								0	0	0	0.28666	1	5707	5707		16.473	0.83134	1		+		10537	16094	6641	6673	10701	10701					0.00016554954913772235
EYYYQFAQSK	10	Unmodified	_EYYYQFAQSK_					0	0	0			REV__IFT88|p.M728*|1|0.4|ENSG00000032742|chr13:20663579-20663579|A/-|frameshift_variant	REV__IFT88|p.M728*|1|0.4|ENSG00000032742|chr13:20663579-20663579|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	663.799560546875	2	663.803685	1325.59282	-2.4529	-0.0016282	-4.0483	-0.0026873	-6.5012	-0.0043155	663.8013854170171	28.236	0.15165	28.236	28.132	28.283	0					5	3	2	0	0	0	0.54861	1	9335	9335		40.058	4.9061	1	114430	+		10538	12971	6642	6674	10702	10702					-0.05695514427384296
FAADAVKL	8	Unmodified	_FAADAVKL_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530666.1_1_11:764238-764842:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.7403564453125	2	417.739628	833.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.35	1	36.35	35.85	36.85	0								0	0	0	1.7419	1	13703	13703		87.754	13.78	1				10539	6649	6643	6675	10703	10703					0.04131014840049829
FAADAVKL	8	Unmodified	_FAADAVKL_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530666.1_1_11:764238-764842:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.7402648925781	2	417.739628	833.464704	1.0598	0.00044272	-0.90546	-0.00037825	0.15434	6.4473E-05	417.73921459693156	36.328	0.22255	36.328	36.247	36.469	0					14	6	4	0	0	0	0.2678	1	13688	13688		93.195	18.679	1	205140			10540	6649	6643	6675	10704	10704					0.04131014840049829
FAADAVKL	8	Unmodified	_FAADAVKL_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530666.1_1_11:764238-764842:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.7397155761719	2	417.739628	833.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.317	1	36.317	35.817	36.817	0								0	0	0	1.7419	1	14134	14134		76.774	15.802	1				10541	6649	6643	6675	10705	10705					0.04131014840049829
FAADAVKL	8	Unmodified	_FAADAVKL_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530666.1_1_11:764238-764842:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.739501953125	2	417.739628	833.464704	-0.30193	-0.00012613	0.24079	0.00010059	-0.061142	-2.5541E-05	417.73974352124054	36.241	0.2629	36.241	36.132	36.395	0					7	5	2	0	0	0	0.2678	1	14077	14077		93.195	27.298	1	206800			10542	6649	6643	6675	10706	10706					0.04131014840049829
FAAEAQKL	8	Unmodified	_FAAEAQKL_					0	0	0		NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant	NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2425537109375	2	439.242535	876.470518	0.57662	0.00025328	-0.91853	-0.00040346	-0.34191	-0.00015018	439.2421487035426	27.716	0.13918	27.716	27.623	27.762	0					9	3	3	0	0	0	0.32815	1	9726	9726		79.451	16.145	1	168770			10543	7370	6644	6676	10707	10707					0.027341133517211347
FAALHGPAL	9	Unmodified	_FAALHGPAL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.7527770996094	2	448.75307	895.491587	-1.1788	-0.00052901	0.26085	0.00011706	-0.91799	-0.00041195	448.7532133970839	37.989	0.17902	37.989	37.949	38.128	0					15	10	2	0	0	0	0.12946	1	12823	12823		72.62	28.089	1	114840			10544	1999	6645	6677	10708	10708					0.03966123451232306
FAALHGPAL	9	Unmodified	_FAALHGPAL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.7521667480469	2	448.75307	895.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.003	1	38.003	37.503	38.503	0								0	0	0	0.21213	1	13602	13602		49.211	20.957	1				10545	1999	6645	6677	10709	10709					0.03966123451232306
FAALHGPAL	9	Unmodified	_FAALHGPAL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.7529602050781	2	448.75307	895.491587	0.86883	0.00038989	-1.5193	-0.00068178	-0.65044	-0.00029189	448.75243160668197	38.162	0.33248	38.162	38.072	38.404	0					16	7	3	0	0	0	0.0062086	1	14973	14973		152.83	98.069	1	979780			10546	1999	6645	6677	10710	10710					0.03966123451232306
FAAQTVGNTY	10	Unmodified	_FAAQTVGNTY_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.2594604492188	2	536.258914	1070.50327	-1.3882	-0.00074444	1.8458	0.00098983	0.45759	0.00024539	536.2604058818422	34.364	0.10227	34.364	34.309	34.411	0					5	3	2	0	0	0	0.42408	1	12168	12168		53.597	23.279	1	29220			10547	4605	6646	6678	10711	10711					-0.029157243160852886
FAATLTGK	8	Unmodified	_FAATLTGK_					0	0	0			REV__UBE3B|p.S234Y|1|0.35|ENSG00000151148|chr12:109491115-109491115|C/A|missense_variant	REV__UBE3B|p.S234Y|1|0.35|ENSG00000151148|chr12:109491115-109491115|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.7315979003906	2	404.731803	807.449054	0.96442	0.00039033	-1.2322	-0.00049872	-0.26779	-0.00010838	404.7313173130203	21.353	0.13991	21.353	21.264	21.404	0					6	3	2	0	0	0	0.5676	1	6786	6786		53.351	9.2347	1	614990	+		10548	15466	6647	6679	10712	10712					0.03762728322988096
FAATLTGK	8	Unmodified	_FAATLTGK_					0	0	0			REV__UBE3B|p.S234Y|1|0.35|ENSG00000151148|chr12:109491115-109491115|C/A|missense_variant	REV__UBE3B|p.S234Y|1|0.35|ENSG00000151148|chr12:109491115-109491115|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.7318420410156	2	404.731803	807.449054	-0.57779	-0.00023385	0.82469	0.00033378	0.2469	9.9928E-05	404.73210314143205	21.246	0.16433	21.246	21.19	21.355	0					5	3	2	0	0	0	0.44433	1	6901	6901		65.803	10.299	1	556880	+		10549	15466	6647	6679	10713	10713					0.03762728322988096
FAATSAKASR	10	Unmodified	_FAATSAKASR_					0	0	0		ENST00000381782.6_2_4:40751996-40752257:+|nuORF	ENST00000381782.6_2_4:40751996-40752257:+|nuORF	ENST00000381782.6_2_4:40751996-40752257:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.27685546875	2	505.274898	1008.53524	2.9345	0.0014827	0.7481	0.000378	3.6826	0.0018607	505.27530790380416	44.478	0.6658	44.478	44.371	45.036	0					59	27	4	0	0	0	0.54197	1	17946	17946		40.778	40.778	1	2681600			10550	9117	6648	6680	10714	10714					0.031316881577026834
FAAYLGAALA	10	Unmodified	_FAAYLGAALA_					0	0	0		nc|ENSG00000132874|Q15849-2|SLC14A2;ENSG00000132874|ENST00000255226|SLC14A2	nc|ENSG00000132874|Q15849-2|SLC14A2	nc|ENSG00000132874|Q15849-2|SLC14A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2660217285156	2	484.26601	966.517468	0.66727	0.00032314	-0.13092	-6.3402E-05	0.53635	0.00025973	484.2659966757413	11.612	0.23821	11.612	11.506	11.744	0					12	6	3	0	0	0	0.71807	1	2415	2415		19.36	1.0356	1	250860			10551	3823	6649	6681	10715	10715					0.03286972902844809
FACLFLSTL	9	Unmodified	_FACLFLSTL_					0	0	0		ENST00000530298.5_1_1:156807654-156845592:+|nuORF;nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1	ENST00000530298.5_1_1:156807654-156845592:+|nuORF	ENST00000530298.5_1_1:156807654-156845592:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.77239990234375	2	507.770071	1013.52559	1.125	0.00057122	4.3766	0.0022223	5.5016	0.0027935	507.7725660375189	35.96	0.14455	35.96	35.884	36.028	0					7	4	2	0	0	0	0.25109	1	13968	13968		55.504	4.3115	1	265170			10552	7556	6650	6682	10716	10716					0.019367838279663374
FACPILRQ	8	Unmodified	_FACPILRQ_					0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENST00000507937.1_1_5:177574516-177575030:+|nuORF;ENSG00000153561|ENST00000283632|RMND5A	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2611083984375	2	474.260205	946.505857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.613	1	26.613	26.113	27.113	0								0	0	0	1.7419	1	8110	8110		44.531	2.0566	1				10553	4703	6651	6683	10717	10717					0.03046452607873107
FADGFVKAL	9	Unmodified	_FADGFVKAL_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.26580810546875	2	484.26601	966.517468	0.86094	0.00041692	-0.74887	-0.00036265	0.11207	5.427E-05	484.2648573086598	44.769	0.16145	44.769	44.683	44.844	0					14	7	3	0	0	0	0.0792	1	17941	17941		84.916	30.139	1	47568			10554	6284	6652	6684	10718	10718					0.03286972902856178
FADGFVKAL	9	Unmodified	_FADGFVKAL_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.26556396484375	2	484.26601	966.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.776	1	44.776	44.276	45.276	0								0	0	0	0.19847	1	17938	17938		51.193	17.02	1				10555	6284	6652	6684	10719	10719					0.03286972902856178
FADGMGMAAL	10	Unmodified	_FADGMGMAAL_					0	0	0			REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2189025878906	2	492.219888	982.425224	-2.6553	-0.001307	1.4416	0.00070959	-1.2137	-0.00059738	492.2205444890872	33.215	0.29231	33.215	33.057	33.35	0					15	9	2	0	0	0	0.44469	1	11606	11606		51.335	8.861	1	254970	+		10556	17350	6653	6685	10720	10720					-0.06669196497341545
FADIEEQTY	9	Unmodified	_FADIEEQTY_					0	0	0			REV__ENSG00000172172|ENST00000306185|MRPL13	REV__ENSG00000172172|ENST00000306185|MRPL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.2492065429688	2	558.248212	1114.48187	1.8021	0.001006	0.201	0.00011221	2.0031	0.0011183	558.2481336237286	33.62	0.55346	33.62	33.456	34.009	0					30	14	4	0	0	0	0.44593	1	12426	12426		37.812	0.65241	1	752610	+		10557	16453	6654	6686	10721	10721					-0.07079154135453791
FADKLVCVH	9	Unmodified	_FADKLVCVH_					0	0	0			REV__nc|ENSG00000151948|Q96MS3-3|GLT1D1	REV__nc|ENSG00000151948|Q96MS3-3|GLT1D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2721557617188	2	516.27077	1030.52699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.804	1	26.804	26.304	27.304	0								0	0	0	0.29774	1	8189	8189		35.618	4.0885	1		+		10558	15494	6655	6687	10722	10722					0.012944179167106995
FADLKEQI	8	Unmodified	_FADLKEQI_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.260009765625	2	482.260925	962.507297	-0.28383	-0.00013688	-1.5445	-0.00074486	-1.8283	-0.00088174	482.2602278032326	14.257	0.085316	14.257	14.205	14.29	0					6	4	2	0	0	0	0.78142	1	2993	2993		23.042	1.0826	1	67338	+		10559	17438	6656	6688	10723	10723					0.02454365177618456
FADPLKRF	8	Unmodified	_FADPLKRF_					0	0	0		tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2810974121094	2	497.279452	992.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.533	1	35.533	35.033	36.033	0								0	0	0	1.7419	1	12024	12024		44.117	5.3107	1				10560	22689	6657	6689	10724	10724					0.047780815140413324
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7720336914062	2	532.772188	1063.52982	0.40676	0.00021671	0.36732	0.0001957	0.77408	0.00041241	532.7722162792946	33.334	0.2123	33.334	33.219	33.431	0					17	8	3	0	0	0	0.052435	1	10801	10801		94.409	24.782	1	135010			10561	1050	6658	6690	10725	10725					0.0005996457523451681
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7723999023438	2	532.772188	1063.52982	0.13147	7.0045E-05	0.45009	0.0002398	0.58157	0.00030984	532.7724268535941	33.493	0.25399	33.493	33.405	33.659	0					21	6	5	0	0	0	0.024312	1	12394	12394		114.86	37.541	1	1096600			10562	1050	6658	6690	10726	10726					0.0005996457523451681
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7720947265625	2	532.772188	1063.52982	-0.36135	-0.00019252	1.1066	0.00058956	0.74524	0.00039704	532.7726591532854	33.359	0.33846	33.359	33.232	33.571	0					36	13	4	0	0	0	0.034688	1	11176	11176		104.42	32.546	1	579840			10563	1050	6658	6690	10727	10727					0.0005996457523451681
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7725830078125	2	532.772188	1063.52982	1.7222	0.00091754	-1.0312	-0.00054942	0.69095	0.00036812	532.7715651132864	33.525	0.39407	33.525	33.296	33.69	0					31	9	5	0	0	0	0.011893	1	12828	12828		136.99	46.619	1	4312500			10564	1050	6658	6690	10728	10728					0.0005996457523451681
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7723388671875	2	532.772188	1063.52982	1.1417	0.00060828	0.11417	6.0827E-05	1.2559	0.00066911	532.7721538621431	33.296	0.32812	33.296	33.218	33.546	0					19	9	3	0	0	0	0.034688	1	11679	11679		104.42	32.546	1	474800			10565	1050	6658	6690	10729	10729					0.0005996457523451681
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7725830078125	2	532.772188	1063.52982	1.763	0.00093927	-0.34397	-0.00018326	1.419	0.00075601	532.7715672744342	33.49	0.56435	33.49	33.135	33.7	0					44	11	5	0	0	0	0.0071744	1	12721	12721		148.69	26.514	1	4633100			10566	1050	6658	6690	10730	10730					0.0005996457523451681
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.23736572265625	2	483.237981	964.461409	0.033042	1.5967E-05	-0.32821	-0.0001586	-0.29516	-0.00014263	483.23775057114227	24.51	0.22946	24.51	24.435	24.664	0					12	6	3	0	0	0	0.11411	1	7238	7238		76.17	11.962	1	358790			10567	5207	6659	6691	10731	10731					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.23779296875	2	483.237981	964.461409	0.59432	0.0002872	-0.66235	-0.00032007	-0.068032	-3.2876E-05	483.2375727604092	24.791	0.25445	24.791	24.698	24.952	0					16	6	4	0	0	0	0.037712	1	8399	8399		101.46	2.8305	1	2530700			10568	5207	6659	6691	10732	10732					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2378234863281	2	483.237981	964.461409	-1.279	-0.00061804	1.1582	0.00055967	-0.12079	-5.8372E-05	483.2386363004996	24.53	0.27162	24.53	24.468	24.739	0					18	9	3	0	0	0	0.037712	1	7525	7525		101.46	27.205	1	563430			10569	5207	6659	6691	10733	10733					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2377624511719	2	483.237981	964.461409	0.67883	0.00032804	-0.49846	-0.00024087	0.18037	8.7164E-05	483.23783085029027	24.755	0.26242	24.755	24.694	24.957	0					15	5	4	0	0	0	0.037712	1	8710	8710		101.46	19.219	1	3430800			10570	5207	6659	6691	10734	10734					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.23779296875	2	483.237981	964.461409	-0.27328	-0.00013206	-0.63698	-0.00030781	-0.91026	-0.00043987	483.2375251150192	24.601	0.1945	24.601	24.506	24.701	0					8	4	2	0	0	0	0.090954	1	7705	7705		81.525	12.738	1	503800			10571	5207	6659	6691	10735	10735					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2378234863281	2	483.237981	964.461409	-2.9193	-0.0014107	2.824	0.0013647	-0.095323	-4.6064E-05	483.239559940818	24.588	0.31949	24.588	24.495	24.814	0					13	7	3	0	0	0	0.11411	1	7697	7697		76.17	9.7404	1	346030			10572	5207	6659	6691	10736	10736					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2375793457031	2	483.237981	964.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.733	1	24.733	24.233	25.233	0								0	0	0	0.018495	1	8569	8569		101.46	13.763	1				10573	5207	6659	6691	10737	10737					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2378234863281	2	483.237981	964.461409	2.4179	0.0011684	-1.9444	-0.00093959	0.47357	0.00022885	483.23715558987044	24.699	0.30341	24.699	24.595	24.899	0					17	6	4	0	0	0	0.037712	1	8562	8562		101.46	16.544	1	2201300			10574	5207	6659	6691	10738	10738					-0.022242800046115008
FAEGFVRAL	9	Unmodified	_FAEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2770080566406	2	505.276909	1008.53927	-0.049086	-2.4802E-05	0.11751	5.9373E-05	0.068419	3.4571E-05	505.2768435199058	44.519	0.16712	44.519	44.469	44.636	0					18	10	2	0	0	0	0.098791	1	16675	16675		79.713	33.761	1	226750			10575	6675	6660	6692	10739	10739					0.03533777651421133
FAEGFVRAL	9	Unmodified	_FAEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2778015136719	2	505.276909	1008.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.352	1	44.352	43.852	44.852	0								0	0	0	0.080575	1	14404	14404		77.318	33.201	1				10576	6675	6660	6692	10740	10740					0.03533777651421133
FAEGFVRAL	9	Unmodified	_FAEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2767028808594	2	505.276909	1008.53927	1.0589	0.00053505	-0.41337	-0.00020887	0.64555	0.00032618	505.2766671576733	44.519	0.31705	44.519	44.452	44.769	0					41	17	3	0	0	0	0.035062	1	17317	17317		104.06	56.141	1	585930			10577	6675	6660	6692	10741	10741					0.03533777651421133
FAEGFVRAL	9	Unmodified	_FAEGFVRAL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2766418457031	2	505.276909	1008.53927	-1.9843	-0.0010026	2.9951	0.0015133	1.0107	0.0005107	505.7799652838886	44.333	0.10453	44.333	44.296	44.401	0					9	6	2	0	0	0	0.30951	1	15244	15244		49.442	15.269	1	56358			10578	6675	6660	6692	10742	10742					0.03533777651421133
FAEGQGRAL	9	Unmodified	_FAEGQGRAL_					0	0	0		PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1;PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7484436035156	2	474.748516	947.482479	0.30302	0.00014386	-0.80326	-0.00038135	-0.50024	-0.00023749	474.748118387635	25.501	1.0458	25.501	25.333	26.379	0					48	23	5	0	0	0	0.032052	1	8716	8716		107.01	52.231	1	5808400			10579	2231	6661	6693	10743	10743					0.006637300948909797
FAEGQGRAL	9	Unmodified	_FAEGQGRAL_					0	0	0		PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1;PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7486877441406	2	474.748516	947.482479	0.61369	0.00029135	-0.35535	-0.0001687	0.25834	0.00012265	474.7484717262997	25.5	0.64198	25.5	25.341	25.983	0					29	11	3	0	0	0	0.095583	2	9064	9049;9064		80.455	16.261	1	9443700			10580	2231	6661	6693	10744;10745	10745					0.006637300948909797
FAEGQGRAL	9	Unmodified	_FAEGQGRAL_					0	0	0		PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1;PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.74871826171875	2	474.748516	947.482479	-0.44346	-0.00021053	-0.27786	-0.00013191	-0.72131	-0.00034244	474.74838018258765	25.348	0.36696	25.348	25.252	25.619	0					22	9	4	0	0	0	0.010494	1	8036	8036		139.97	55.055	1	1510800			10581	2231	6661	6693	10746	10746					0.006637300948909797
FAEGQGRAL	9	Unmodified	_FAEGQGRAL_					0	0	0		PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1;PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.74981689453125	2	474.748516	947.482479	-2.6342	-0.0012506	4.3097	0.002046	1.6755	0.00079542	474.75090937496776	25.335	0.27583	25.335	25.198	25.474	0					17	6	4	0	0	0	0.16806	1	8048	8048		65.465	22.601	1	548470			10582	2231	6661	6693	10747	10747					0.006637300948909797
FAEGQGRAL	9	Unmodified	_FAEGQGRAL_					0	0	0		PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1;PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7495422363281	2	474.748516	947.482479	2.3391	0.0011105	-0.58475	-0.00027761	1.7544	0.0008329	474.748412189249	25.44	0.80438	25.44	25.23	26.034	0					32	14	4	0	0	0	0.12834	1	8917	8917		72.879	19.528	1	3483300			10583	2231	6661	6693	10748	10748					0.006637300948909797
FAEIRVQF	8	Unmodified	_FAEIRVQF_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF;NALCN|p.K626Nfs*19|1|0.45|ENSG00000102452|chr13:101144858-101144858|C/-|frameshift_variant;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;NALCN|p.K812Rfs*6|1|0.11|ENSG00000102452|chr13:101107719-101107719|T/-|frameshift_variant;NALCN|p.V852Wfs*19|1|0.07|ENSG00000102452|chr13:101107512-101107512|C/-|frameshift_variant;NALCN|p.F1212Lfs*26|2|0.08|ENSG00000102452|chr13:101083146-101083146|A/-|frameshift_variant	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2765808105469	2	505.276909	1008.53927	1.2288	0.0006209	-1.6669	-0.00084223	-0.43805	-0.00022134	505.27595305748787	44.939	0.25513	44.939	44.837	45.092	0					17	10	2	0	0	0	0.61938	1	17998	17998		45.952	1.8352	1	75585			10584	2173	6662	6694	10749	10749					0.03533777651421133
FAENGTVQY	9	Unmodified	_FAENGTVQY_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.73876953125	2	514.737814	1027.46108	1.2807	0.00065923	-0.66428	-0.00034193	0.61643	0.0003173	514.7375842925178	34.73	0.13728	34.73	34.662	34.799	0					9	6	2	0	0	0	0.17854	1	11366	11366		64.207	27.048	1	76554			10585	2024	6663	6695	10750	10750					-0.05155699724468832
FAENGTVQY	9	Unmodified	_FAENGTVQY_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7376098632812	2	514.737814	1027.46108	1.1701	0.0006023	-0.83357	-0.00042907	0.33654	0.00017323	514.7372815878136	34.997	0.20868	34.997	34.878	35.087	0					12	5	3	0	0	0	0.0086566	1	13079	13079		143.89	61.582	1	571850			10586	2024	6663	6695	10751	10751					-0.05155699724468832
FAENGTVQY	9	Unmodified	_FAENGTVQY_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.73779296875	2	514.737814	1027.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.015	1	35.015	34.515	35.515	0								0	0	0	0.0124	1	13538	13538		107.01	23.72	1				10587	2024	6663	6695	10752	10752					-0.05155699724468832
FAENGTVQY	9	Unmodified	_FAENGTVQY_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7380981445312	2	514.737814	1027.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.771	1	34.771	34.271	35.271	0								0	0	0	0.14033	1	12339	12339		62.107	3.3255	1				10588	2024	6663	6695	10753	10753					-0.05155699724468832
FAENGTVQY	9	Unmodified	_FAENGTVQY_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7379150390625	2	514.737814	1027.46108	0.13532	6.9653E-05	0.342	0.00017604	0.47732	0.00024569	514.737957943428	34.939	0.26681	34.939	34.83	35.097	0					11	5	3	0	0	0	0.048471	1	13431	13431		95.815	27.33	1	386370			10589	2024	6663	6695	10754	10754					-0.05155699724468832
FAENGTVQY	9	Unmodified	_FAENGTVQY_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.738037109375	2	514.737814	1027.46108	1.4854	0.00076462	-0.98908	-0.00050912	0.49636	0.0002555	514.7371205588452	34.922	0.36386	34.922	34.815	35.179	0					12	7	3	0	0	0	0.021961	1	13444	13444		118.74	33.384	1	592890			10590	2024	6663	6695	10755	10755					-0.05155699724468832
FAERVTSL	8	Unmodified	_FAERVTSL_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.7528076171875	2	461.753267	921.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.045	1	33.045	32.545	33.545	0								0	0	0	1.7419	1	12187	12187		85.161	2.8558	1				10591	7783	6664	6696	10756	10756					0.028094983804294316
FAFAFVVI	8	Unmodified	_FAFAFVVI_					0	0	0			REV__tr|U7SFR3|U7SFR3_FUSNUDiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02327PE=4SV=1	REV__tr|U7SFR3|U7SFR3_FUSNUDiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02327PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2638244628906	2	457.262739	912.510926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.001	1	46.001	45.501	46.501	0								0	0	0	1.7419	1	17057	17057		24.504	0	1		+		10592	21678	6665	6697	10757	10757					0.051170797421377756
FAFEHSEEY	9	Unmodified	_FAFEHSEEY_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;TCF25|p.S448Lfs*3|1|0.21|ENSG00000141002|chr16:89900755-89900755|T/-|frameshift_variant;ENST00000568870.1_1_16:89958640-89960287:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.7412109375	2	579.740554	1157.46655	1.5853	0.00091907	-0.5703	-0.00033063	1.015	0.00058845	579.7400957442638	36.647	0.18478	36.647	36.564	36.748	0					12	5	3	0	0	0	0.043797	1	14298	14298		97.473	15.232	1	166510			10593	4420	6666	6698	10758	10758					-0.10588020932664222
FAFEHSEEY	9	Unmodified	_FAFEHSEEY_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;TCF25|p.S448Lfs*3|1|0.21|ENSG00000141002|chr16:89900755-89900755|T/-|frameshift_variant;ENST00000568870.1_1_16:89958640-89960287:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.2423706054688	2	579.740554	1157.46655	1.7406	0.0010091	-1.0158	-0.00058892	0.72473	0.00042015	579.7398546268497	36.606	0.3671	36.606	36.513	36.88	0					15	7	4	0	0	0	0.011305	1	14240	14240		138.24	66.947	1	342780			10594	4420	6666	6698	10759	10759					-0.10588020932664222
FAFVCHPEVL	10	Unmodified	_FAFVCHPEVL_					0	0	0		ENST00000417121.2_1_3:50255369-50255834:+|nuORF;nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5;SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant;ENSG00000188338|ENST00000614032|SLC38A3;ENSG00000139209|ENST00000266579|SLC38A4	ENST00000417121.2_1_3:50255369-50255834:+|nuORF	ENST00000417121.2_1_3:50255369-50255834:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.2896118164062	2	581.291702	1160.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.692	1	33.692	33.192	34.192	0								0	0	0	0.38322	1	12915	12915		35.618	0	1				10595	1087	6667	6699	10760	10760					-0.005010263947497151
FAGAKGGG	8	Unmodified	_FAGAKGGG_					0	0	0		ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.67413330078125	2	332.674289	663.334024	0.26138	8.6954E-05	-0.50386	-0.00016762	-0.24248	-8.0666E-05	332.6741092136068	16.858	0.29945	16.858	16.712	17.012	0					26	12	3	0	0	0	0.78318	1	3891	3891		9.4706	5.1543	1	288640			10596	9419	6668	6700	10761	10761					-0.011109560881322977
FAGAKGGG	8	Unmodified	_FAGAKGGG_					0	0	0		ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.6742858886719	2	332.674289	663.334024	-0.66759	-0.00022209	0.90523	0.00030115	0.23764	7.9055E-05	332.67452492877175	16.906	0.20088	16.906	16.8	17.001	0					15	8	2	0	0	0	0.7764	1	4121	4121		4.6817	3.2169	1	101500			10597	9419	6668	6700	10762	10762					-0.011109560881322977
FAGAKGGG	8	Unmodified	_FAGAKGGG_					0	0	0		ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.6741943359375	2	332.674289	663.334024	0.54086	0.00017993	-0.55929	-0.00018606	-0.018429	-6.1307E-06	332.6740948047589	17.14	0.37142	17.14	16.93	17.301	0					14	7	3	0	0	0	0.7764	1	5004	5004		4.6817	0.36548	1	649620			10598	9419	6668	6700	10763	10763					-0.011109560881322977
FAGAKGLLTAP	11	Unmodified	_FAGAKGLLTAP_					0	0	0			REV__ENSG00000105245|ENST00000252891|NUMBL	REV__ENSG00000105245|ENST00000252891|NUMBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3040161132812	2	523.305667	1044.59678	-1.284	-0.00067194	-2.8803	-0.0015073	-4.1644	-0.0021792	523.3048682865136	22.37	0.24066	22.37	22.276	22.517	0					12	5	3	0	0	0	0.47622	1	6660	6660		45.972	5.9141	1	200820	+		10599	13762	6669	6701	10764	10764					0.07626619856978323
FAGDDAPRA	9	Unmodified	_FAGDDAPRA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ACTA1|p.G22D|1|0.25|ENSG00000143632|chr1:229433051-229433051|C/T|missense_variant;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2165832519531	2	460.217049	918.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.622	1	22.622	22.122	23.122	0								0	0	0	0.072369	1	6424	6424		79.713	35.335	1				10600	1545;6995;2493;7397;7857	6670	6702	10765	10765					-0.04292835693149755
FAGDDAPRA	9	Unmodified	_FAGDDAPRA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ACTA1|p.G22D|1|0.25|ENSG00000143632|chr1:229433051-229433051|C/T|missense_variant;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2168273925781	2	460.217049	918.419545	0.81748	0.00037622	-0.36734	-0.00016906	0.45014	0.00020716	460.21631211298586	22.932	0.17217	22.932	22.846	23.018	0					15	4	5	0	0	0	0.07136	1	7518	7518		87.696	18.069	1	465630			10601	1545;6995;2493;7397;7857	6670	6702	10766	10766					-0.04292835693149755
FAGDDAPRA	9	Unmodified	_FAGDDAPRA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ACTA1|p.G22D|1|0.25|ENSG00000143632|chr1:229433051-229433051|C/T|missense_variant;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.21722412109375	2	460.217049	918.419545	4.2481	0.0019551	-3.5044	-0.0016128	0.7437	0.00034226	460.21523217240116	22.631	0.11002	22.631	22.572	22.682	0					6	3	2	0	0	0	0.098791	1	6705	6705		79.713	35.182	1	66614			10602	1545;6995;2493;7397;7857	6670	6702	10767	10767					-0.04292835693149755
FAGDDAPRA	9	Unmodified	_FAGDDAPRA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ACTA1|p.G22D|1|0.25|ENSG00000143632|chr1:229433051-229433051|C/T|missense_variant;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.21673583984375	2	460.217049	918.419545	-0.1532	-7.0507E-05	-0.11625	-5.3498E-05	-0.26945	-0.00012401	460.21671585251926	22.819	0.3176	22.819	22.711	23.028	0					11	6	3	0	0	0	0.028876	1	7787	7787		110.12	56.768	1	504870			10603	1545;6995;2493;7397;7857	6670	6702	10768	10768					-0.04292835693149755
FAGDDAPRA	9	Unmodified	_FAGDDAPRA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ACTA1|p.G22D|1|0.25|ENSG00000143632|chr1:229433051-229433051|C/T|missense_variant;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2170104980469	2	460.217049	918.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.739	1	22.739	22.239	23.239	0								0	0	0	0.072369	1	6824	6824		79.713	29.688	1				10604	1545;6995;2493;7397;7857	6670	6702	10769	10769					-0.04292835693149755
FAGDDAPRA	9	Unmodified	_FAGDDAPRA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ACTA1|p.G22D|1|0.25|ENSG00000143632|chr1:229433051-229433051|C/T|missense_variant;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.21697998046875	2	460.217049	918.419545	-0.45302	-0.00020849	0.67771	0.0003119	0.22469	0.00010341	460.21705822409007	22.842	0.16651	22.842	22.739	22.905	0					10	3	4	0	0	0	0.0406	1	7648	7648		98.629	32.2	1	655600			10605	1545;6995;2493;7397;7857	6670	6702	10770	10770					-0.04292835693149755
FAGGQALVT	9	Unmodified	_FAGGQALVT_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.23443603515625	2	432.23471	862.454868	-0.25652	-0.00011088	-0.38339	-0.00016571	-0.63991	-0.00027659	432.23456616670285	28.75	0.23457	28.75	28.678	28.912	0					22	8	4	0	0	0	0.17854	1	8989	8989		64.207	4.089	1	733480	+		10606	14359	6671	6703	10771	10771					0.018138268346547193
FAGKVLRL	8	Unmodified	_FAGKVLRL_					0	0	0		ENSG00000130560|ENST00000371756|UBAC1	ENSG00000130560|ENST00000371756|UBAC1	ENSG00000130560|ENST00000371756|UBAC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.29193115234375	2	452.292362	902.570172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.297	1	31.297	30.797	31.797	0								0	0	0	1.7419	1	11788	11788		55.504	10.973	1				10607	3650	6672	6704	10772	10772					0.11498975756330765
FAGLVTVGAP	10	Unmodified	_FAGLVTVGAP_					0	0	0			REV__ENSG00000139200|ENST00000534837|PIANP	REV__ENSG00000139200|ENST00000534837|PIANP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2672424316406	2	466.26601	930.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.587	1	34.587	34.087	35.087	0								0	0	0	0.37816	1	11673	11673		37.159	0.71236	1		+		10608	15015	6673	6705	10773	10773					0.04942972902847487
FAGNQAKR	8	Unmodified	_FAGNQAKR_					0	0	0		ENSG00000163888|ENST00000296238|CAMK2N2	ENSG00000163888|ENST00000296238|CAMK2N2	ENSG00000163888|ENST00000296238|CAMK2N2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.2422790527344	2	446.243401	890.472249	-2.715	-0.0012115	0.49849	0.00022245	-2.2165	-0.00098909	446.2436617140173	19.775	0.40223	19.775	19.562	19.964	0					20	9	4	0	0	0	0.75243	1	5391	5391		26.796	3.7536	1	711880			10609	5619	6674	6706	10774	10774					0.022631671603221548
FAGPCKVI	8	Carbamidomethyl (C)	_FAGPC(Carbamidomethyl (C))KVI_	FAGPC(1)KVI		FAGPC(83)KVI		0	1	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2412414550781	2	446.241481	890.468409	0.60263	0.00026892	-1.8861	-0.00084165	-1.2835	-0.00057273	446.24075804110794	32.27	0.57732	32.27	31.977	32.555	0					28	14	3	0	0	0	0.29779	1	11840	11840		83.287	35.63	1	276250			10610	8001	6675	6707	10775	10775	346				0.018793613422531052
FAGPCKVI	8	Carbamidomethyl (C)	_FAGPC(Carbamidomethyl (C))KVI_	FAGPC(1)KVI		FAGPC(42)KVI		0	1	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.24090576171875	2	446.241481	890.468409	-1.1678	-0.0005211	0.62831	0.00028038	-0.53945	-0.00024073	446.2417649823561	32.037	0.37336	32.037	31.818	32.191	0					29	15	3	0	0	0	0.64096	1	10651	10651		42.474	7.2737	1	110150			10611	8001	6675	6707	10776	10776	346				0.018793613422531052
FAGPCKVI	8	Carbamidomethyl (C)	_FAGPC(Carbamidomethyl (C))KVI_	FAGPC(1)KVI		FAGPC(71)KVI		0	1	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.2413024902344	2	446.241481	890.468409	0.58773	0.00026227	-1.5929	-0.00071081	-1.0052	-0.00044854	446.24078683802054	32.233	0.5153	32.233	31.945	32.46	0					25	11	3	0	0	0	0.39542	1	12222	12222		71.378	26.847	1	560790			10612	8001	6675	6707	10777	10777	346				0.018793613422531052
FAGPCKVI	8	Carbamidomethyl (C)	_FAGPC(Carbamidomethyl (C))KVI_	FAGPC(1)KVI		FAGPC(45)KVI		0	1	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.2413635253906	2	446.241481	890.468409	-0.44462	-0.00019841	-0.46087	-0.00020566	-0.90549	-0.00040407	446.24150187150263	32.048	0.31352	32.048	31.862	32.175	0					15	9	2	0	0	0	0.6282	1	11093	11093		44.531	9.3304	1	64844			10613	8001	6675	6707	10778	10778	346				0.018793613422531052
FAGPCKVI	8	Carbamidomethyl (C)	_FAGPC(Carbamidomethyl (C))KVI_	FAGPC(1)KVI		FAGPC(66)KVI		0	1	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2411804199219	2	446.241481	890.468409	0.8213	0.0003665	-2.0509	-0.0009152	-1.2296	-0.0005487	446.24069426118325	32.223	0.57066	32.223	31.902	32.472	0					29	11	4	0	0	0	0.4434	1	12133	12133		65.897	28.869	1	751260			10614	8001	6675	6707	10779	10779	346				0.018793613422531052
FAGPCKVI	8	Unmodified	_FAGPCKVI_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.7306213378906	2	417.730749	833.446945	1.0585	0.00044219	-1.7184	-0.00071783	-0.65987	-0.00027565	417.73006964611386	35.221	0.24337	35.221	35.074	35.317	0					10	6	2	0	0	0	0.57802	1	13192	13192		52.299	8.1824	1	56484			10615	8001	6675	6708	10780	10780					0.023559763135381218
FAGPHSTL	8	Unmodified	_FAGPHSTL_					0	0	0		ENST00000480807.1_1_7:2294693-2297236:-|nuORF;ENSG00000106266|ENST00000222990|SNX8	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.2136535644531	2	415.213778	828.413003	-0.77056	-0.00031995	0.50494	0.00020966	-0.26561	-0.00011029	415.2139682191159	27.123	0.37992	27.123	26.914	27.293	0					17	9	2	0	0	0	0.36926	1	9409	9409		74.517	17.064	1	445390			10616	2428	6676	6709	10781	10781					-0.008067288538541106
FAGPHSTL	8	Unmodified	_FAGPHSTL_					0	0	0		ENST00000480807.1_1_7:2294693-2297236:-|nuORF;ENSG00000106266|ENST00000222990|SNX8	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.213623046875	2	415.213778	828.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.121	1	27.121	26.621	27.621	0								0	0	0	1.7419	1	9790	9790		79.939	19.645	1				10617	2428	6676	6709	10782	10782					-0.008067288538541106
FAGRLLTPT	9	Unmodified	_FAGRLLTPT_					0	0	0			REV__ENST00000481121.5_1_6:31921790-31926696:-|nuORF	REV__ENST00000481121.5_1_6:31921790-31926696:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7859802246094	2	488.284734	974.554916	-0.19499	-9.521E-05	-0.63049	-0.00030786	-0.82547	-0.00040307	488.2843266704132	35.622	0.20042	35.622	35.524	35.724	0					19	8	3	0	0	0	0.54267	1	12677	12677		27.882	1.1893	1	169930	+		10618	17478	6677	6710	10783	10783					0.06662064168460802
FAHAVAGP	8	Unmodified	_FAHAVAGP_					0	0	0			REV__ENST00000533708.1_1_11:82783791-82783899:+|nuORF	REV__ENST00000533708.1_1_11:82783791-82783899:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.2037048339844	2	385.203213	768.391873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.408	1	12.408	11.908	12.908	0								0	0	0	1.7419	1	2632	2632		16.705	6.5202	1		+		10619	20085	6678	6711	10784	10784					-0.0015869416272380477
FAHDDSVMY	9	Unmodified	_FAHDDSVMY_					0	0	0		WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.72412109375	2	542.723849	1083.43315	0.31825	0.00017272	0.47707	0.00025892	0.79532	0.00043164	542.7242007036147	33.466	0.2784	33.466	33.326	33.605	0					16	6	4	0	0	0	0.35045	1	12800	12800		45.952	3.5558	1	459550			10620	1366	6679	6712	10785	10785					-0.10523345976207565
FAHDSTRVI	9	Unmodified	_FAHDSTRVI_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2756958007812	2	523.274898	1044.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.657	1	24.657	24.157	25.157	0								0	0	0	0.35377	1	8328	8328		24.519	0.31644	1				10621	1644	6680	6713	10786	10786					0.014756881577113745
FAHEAPAFLP	10	Unmodified	_FAHEAPAFLP_					0	0	0		ENST00000526139.1_1_11:88911121-88933495:+|nuORF;nc|ENSG00000077498|P14679-2|TYR;ENSG00000077498|ENST00000263321|TYR	ENST00000526139.1_1_11:88911121-88933495:+|nuORF	ENST00000526139.1_1_11:88911121-88933495:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2818603515625	2	550.282192	1098.54983	0.60939	0.00033533	-2.8927	-0.0015918	-2.2833	-0.0012564	550.2805068761095	40.162	0.3545	40.162	39.971	40.325	0					17	8	3	0	0	0	0.58896	1	15913	15913		35.618	2.8678	1	89776			10622	1585	6681	6714	10787	10787					0.004497603058325694
FAHGNAEL	8	Unmodified	_FAHGNAEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;nc|ENSG00000122299|Q8IWR0-2|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.7087097167969	2	429.70886	857.403166	-0.57084	-0.0002453	0.24264	0.00010427	-0.3282	-0.00014103	429.70896248721266	25.37	0.34918	25.37	25.275	25.624	0					13	8	2	0	0	0	0.24425	1	8668	8668		111.65	34.802	1	799170			10623	3259	6682	6715	10788	10788					-0.031239168592492206
FAHGNAEL	8	Unmodified	_FAHGNAEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;nc|ENSG00000122299|Q8IWR0-2|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.7088623046875	2	429.70886	857.403166	-0.89502	-0.0003846	0.57583	0.00024744	-0.31918	-0.00013716	429.709106909172	25.13	0.20121	25.13	25.057	25.259	0					12	6	3	0	0	0	0.67394	1	7772	7772		37.159	1.9584	1	237950			10624	3259	6682	6715	10789	10789					-0.031239168592492206
FAHGNAEL	8	Unmodified	_FAHGNAEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;nc|ENSG00000122299|Q8IWR0-2|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.70880126953125	2	429.70886	857.403166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.38	1	25.38	24.88	25.88	0								0	0	0	1.7419	1	9001	9001		99.375	38.403	1				10625	3259	6682	6715	10790	10790					-0.031239168592492206
FAHILFMQA	9	Unmodified	_FAHILFMQA_					0	0	0			REV__ENSG00000205495|ENST00000380370|OR52J3	REV__ENSG00000205495|ENST00000380370|OR52J3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2813110351562	2	539.281137	1076.54772	1.4253	0.00076862	-1.1907	-0.00064215	0.23453	0.00012648	539.2805351336083	17.509	0.21869	17.509	17.449	17.668	0					7	4	3	0	0	0	0.16524	1	5221	5221		65.803	16.362	1	494480	+		10626	17525	6683	6716	10791	10791					0.012510082964126923
FAHTNVESL	9	Unmodified	_FAHTNVESL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.25341796875	2	509.253631	1016.49271	-0.017622	-8.9738E-06	-0.18953	-9.6517E-05	-0.20715	-0.00010549	509.25351246067567	31.077	0.42826	31.077	30.944	31.372	0					27	10	5	0	0	0	0.035062	1	11261	11261		104.06	2.4561	1	7549100			10627	5960	6684	6717	10792	10792					-0.014877069705221402
FAHTNVESL	9	Unmodified	_FAHTNVESL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.25335693359375	2	509.253631	1016.49271	-0.39004	-0.00019863	0.28129	0.00014325	-0.10875	-5.5381E-05	509.25382335510807	30.855	0.2712	30.855	30.762	31.034	0					21	9	3	0	0	0	0.12834	1	10156	10156		72.879	6.45	1	544070			10628	5960	6684	6717	10793	10793					-0.014877069705221402
FAIANQTNLR	10	Unmodified	_FAIANQTNLR_					0	0	0			REV__nc|ENSG00000206561|Q9Y215-3|COLQ	REV__nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.3147583007812	2	574.314554	1146.61456	-1.5019	-0.00086258	1.817	0.0010435	0.31504	0.00018093	574.3153132488002	35.533	0.082619	35.533	35.488	35.57	0					5	3	2	0	0	0	0.59277	1	12675	12675		35.152	3.6222	1	33217	+		10629	17544	6685	6718	10794	10794					0.04711335111824155
FAIEEQLSEVK	11	Unmodified	_FAIEEQLSEVK_					0	0	0			REV__ENSG00000026025|ENST00000544301|VIM	REV__ENSG00000026025|ENST00000544301|VIM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	646.8385009765625	2	646.840268	1291.66598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.864	1	20.864	20.364	21.364	0								0	0	0	0.39288	1	5948	5948		29.17	0	1		+		10630	12958	6686	6719	10795	10795					0.03181614295226609
FAIGSQTTK	9	Unmodified	_FAIGSQTTK_					0	0	0		nc|ENSG00000081154|Q8WW12-2|PCNP;ENSG00000081154|ENST00000265260|PCNP	nc|ENSG00000081154|Q8WW12-2|PCNP	nc|ENSG00000081154|Q8WW12-2|PCNP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.259765625	2	476.758549	951.502546	0.0046732	2.228E-06	-0.66784	-0.0003184	-0.66317	-0.00031617	476.7581976090441	25.466	0.11879	25.466	25.416	25.535	0					9	5	2	0	0	0	0.33044	1	7662	7662		47.657	10.498	1	54698			10631	1656	6687	6720	10796	10796					0.0248548103485291
FAIPKEKD	8	Unmodified	_FAIPKEKD_					0	0	0		FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1;FREM1|p.S1085Afs*5|1|0.39|ENSG00000164946|chr9:14806682-14806682|T/-|frameshift_variant;FREM1|p.S839Lfs*8|1|0.23|ENSG00000164946|chr9:14819265-14819265|A/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2633056640625	2	474.263468	946.512382	-1.6019	-0.00075971	1.4454	0.00068548	-0.15651	-7.4228E-05	474.2640232731911	40.354	0.23068	40.354	40.222	40.453	0					21	13	2	0	0	0	0.6282	1	13490	13490		44.531	9.3304	1	114550			10632	5747	6688	6721	10797	10797					0.03698669040238656
FAIRRLPL	8	Unmodified	_FAIRRLPL_					0	0	0		ENST00000466942.2_1_10:77161749-77161830:+|nuORF	ENST00000466942.2_1_10:77161749-77161830:+|nuORF	ENST00000466942.2_1_10:77161749-77161830:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.3177795410156	2	493.318912	984.62327	0.62492	0.00030829	-1.2802	-0.00063156	-0.65531	-0.00032328	493.3182171988697	43.044	0.17674	43.044	42.976	43.153	0					12	8	2	0	0	0	0.55361	1	16852	16852		54.765	7.1073	1	71290			10633	9794	6689	6722	10798	10798					0.13034353538989762
FAKGGNLTL	9	Unmodified	_FAKGGNLTL_					0	0	0		ENST00000497051.5_1_2:233054-249752:-|nuORF;nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1;nc|ENSG00000035115|Q96HL8-2|SH3YL1;ENSG00000035115|ENST00000356150|SH3YL1	ENST00000497051.5_1_2:233054-249752:-|nuORF	ENST00000497051.5_1_2:233054-249752:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7630615234375	2	460.763635	919.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.933	1	32.933	32.433	33.433	0								0	0	0	0.17378	1	12135	12135		54.776	10.66	1				10634	1165	6690	6723	10799	10799					0.04974088760093309
FAKGGNLTL	9	Unmodified	_FAKGGNLTL_					0	0	0		ENST00000497051.5_1_2:233054-249752:-|nuORF;nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1;nc|ENSG00000035115|Q96HL8-2|SH3YL1;ENSG00000035115|ENST00000356150|SH3YL1	ENST00000497051.5_1_2:233054-249752:-|nuORF	ENST00000497051.5_1_2:233054-249752:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.763427734375	2	460.763635	919.512717	-0.86912	-0.00040046	-0.28117	-0.00012955	-1.1503	-0.00053001	460.7634531624757	32.704	0.2468	32.704	32.61	32.857	0					19	9	3	0	0	0	0.20551	1	10916	10916		60.972	6.1956	1	244760			10635	1165	6690	6723	10800	10800					0.04974088760093309
FAKGGNLTL	9	Unmodified	_FAKGGNLTL_					0	0	0		ENST00000497051.5_1_2:233054-249752:-|nuORF;nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1;nc|ENSG00000035115|Q96HL8-2|SH3YL1;ENSG00000035115|ENST00000356150|SH3YL1	ENST00000497051.5_1_2:233054-249752:-|nuORF	ENST00000497051.5_1_2:233054-249752:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7635192871094	2	460.763635	919.512717	-0.098281	-4.5284E-05	-0.77167	-0.00035556	-0.86995	-0.00040084	460.7632327436678	32.662	0.29446	32.662	32.605	32.9	0					13	8	2	0	0	0	0.03984	1	11386	11386		99.375	33.572	1	219770			10636	1165	6690	6723	10801	10801					0.04974088760093309
FAKGGNLTL	9	Unmodified	_FAKGGNLTL_					0	0	0		ENST00000497051.5_1_2:233054-249752:-|nuORF;nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1;nc|ENSG00000035115|Q96HL8-2|SH3YL1;ENSG00000035115|ENST00000356150|SH3YL1	ENST00000497051.5_1_2:233054-249752:-|nuORF	ENST00000497051.5_1_2:233054-249752:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7635498046875	2	460.763635	919.512717	0.85275	0.00039292	-1.8191	-0.00083818	-0.96636	-0.00044526	460.7628532297537	32.866	0.35335	32.866	32.706	33.059	0					14	7	3	0	0	0	0.055856	1	12440	12440		93.195	19.221	1	1172600			10637	1165	6690	6723	10802	10802					0.04974088760093309
FAKMILAI	8	Oxidation (M)	_FAKM(Oxidation (M))ILAI_		FAKM(1)ILAI		FAKM(45)ILAI	0	0	1			REV__tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	REV__tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.77447509765625	2	461.775157	921.53576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.281	1	33.281	32.781	33.781	0								0	0	0	1.7419	1	10809	10809		44.531	7.5026	1		+		10638	22175	6691	6724	10803	10803		805			0.07185391553196041
FAKNCHHPV	9	Unmodified	_FAKNCHHPV_					0	0	0			REV__ENST00000442578.5_2_7:65894980-65944034:-|nuORF	REV__ENST00000442578.5_2_7:65894980-65944034:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7592163085938	2	526.758361	1051.50217	3.465	0.0018252	-4.3874	-0.0023111	-0.92239	-0.00048588	526.7566346921653	43.455	0.17303	43.455	43.378	43.551	0					11	6	2	0	0	0	0.23186	1	17389	17389		57.811	4.8746	1	72393	+		10639	19254	6692	6725	10804	10804					-0.021522171660080858
FALGPTISF	9	Unmodified	_FALGPTISF_					0	0	0		ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7587890625	2	476.760561	951.506569	-1.5125	-0.00072111	-2.7279	-0.0013006	-4.2405	-0.0020217	476.75908086745886	25.534	0.14571	25.534	25.45	25.596	0					9	5	2	0	0	0	0.23186	1	7946	7946		57.811	11.859	1	89780			10640	7667	6693	6726	10805	10805					0.02887570528582728
FALGQFSENL	10	Unmodified	_FALGQFSENL_					0	0	0		ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4	ENST00000561199.5_1_14:24652794-24657993:-|nuORF;nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.2845458984375	2	563.282389	1124.55022	3.4706	0.001955	0.19031	0.0001072	3.661	0.0020622	563.2825146171734	32.452	0.57122	32.452	32.338	32.909	0					25	11	4	0	0	0	0.21754	1	12245	12245		77.318	9.8239	1	1894900			10641	7369;10706	6694	6727	10806	10806					-0.007068647649475679
FALNVALNAG	10	Unmodified	_FALNVALNAG_					0	0	0		tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1	tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1	tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.77691650390625	2	495.274367	988.53418	0.93521	0.00046319	1.4372	0.0007118	2.3724	0.001175	495.27527552282965	30.334	0.54864	30.334	30.131	30.68	0					31	11	5	0	0	0	0.46215	1	11206	11206		49.442	0	1	2534700			10642	22931	6695	6728	10807	10807					0.03945473788803611
FALPEDAG	8	Unmodified	_FALPEDAG_					0	0	0			REV__ENST00000225726.9_1_17:61850918-61850993:-|nuORF	REV__ENST00000225726.9_1_17:61850918-61850993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	410.19635009765625	2	410.197793	818.381034	-1.422	-0.0005833	-2.6781	-0.0010985	-4.1001	-0.0016818	410.19686690347544	23.249	0.13547	23.249	23.211	23.346	0					9	4	3	0	0	0	0.67475	1	6963	6963		37.028	3.5129	1	183780	+		10643	17899	6696	6729	10808	10808					-0.03542141327659465
FALPTFLGS	9	Unmodified	_FALPTFLGS_					0	0	0			REV__ENST00000486743.1_1_7:143682974-143683349:+|nuORF	REV__ENST00000486743.1_1_7:143682974-143683349:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7585754394531	2	476.760561	951.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.584	1	25.584	25.084	26.084	0								0	0	0	0.22106	1	8155	8155		47.916	5.4411	1		+		10644	19667	6697	6730	10809	10809					0.02887570528582728
FALRWEAL	8	Unmodified	_FALRWEAL_					0	0	0			REV__ENST00000419025.1_1_3:183744680-183744779:-|nuORF	REV__ENST00000419025.1_1_3:183744680-183744779:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2813415527344	2	503.279452	1004.54435	1.1774	0.00059259	1.4641	0.00073687	2.6416	0.0013295	503.2804110878208	43.929	0.45953	43.929	43.837	44.296	0					40	18	4	0	0	0	0.66372	1	17587	17587		38.806	1.647	1	623420	+		10645	19057	6698	6731	10810	10810					0.0422608151403665
FAMKLLQFT	9	Oxidation (M)	_FAM(Oxidation (M))KLLQFT_		FAM(1)KLLQFT		FAM(44)KLLQFT	0	0	1			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF;REV__SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.20501708984375	3	372.203694	1113.58925	3.2138	0.0011962	0.20581	7.6605E-05	3.4196	0.0012728	372.20376759527267	21.445	0.91534	21.445	21.355	22.27	0					32	18	4	0	0	0	0.36892	1	6977	6977		44.377	11.338	1	1691200	+		10646	19267;13525	6699	6732	10811	10811		518			0.03700144265076233
FAMPWPAAGL	10	Unmodified	_FAMPWPAAGL_					0	0	0			REV__DVL3|p.P527L|1|0.31|ENSG00000161202|chr3:184170087-184170087|C/T|missense_variant	REV__DVL3|p.P527L|1|0.31|ENSG00000161202|chr3:184170087-184170087|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.76904296875	2	530.767863	1059.52117	0.41124	0.00021827	-0.41205	-0.0002187	-0.00080946	-4.2964E-07	530.7679876886727	40.788	0.11604	40.788	40.698	40.814	0					15	7	3	0	0	0	0.59237	1	13142	13142		35.201	6.0512	1	86350	+		10647	12751	6700	6733	10812	10812					-0.006206805949432237
FANDANKVL	9	Unmodified	_FANDANKVL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.F471Lfs*2|1|0.21|ENSG00000123104|chr12:26666048-26666048|A/-|frameshift_variant;ITPR2|p.L479Ffs*33|1|0.04|ENSG00000123104|chr12:26666026-26666027|-/GGAACAAA|frameshift_variant;ITPR2|p.D636Afs*14|1|0.07|ENSG00000123104|chr12:26658110-26658111|-/AATGG|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.26385498046875	2	496.263999	990.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.034	1	30.034	29.534	30.534	0								0	0	0	0.095784	1	9528	9528		72.879	15.068	1				10648	3298	6701	6734	10813	10813					0.01780883409139733
FANDANKVL	9	Unmodified	_FANDANKVL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.F471Lfs*2|1|0.21|ENSG00000123104|chr12:26666048-26666048|A/-|frameshift_variant;ITPR2|p.L479Ffs*33|1|0.04|ENSG00000123104|chr12:26666026-26666027|-/GGAACAAA|frameshift_variant;ITPR2|p.D636Afs*14|1|0.07|ENSG00000123104|chr12:26658110-26658111|-/AATGG|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2635803222656	2	496.263999	990.513445	-0.35985	-0.00017858	-0.85909	-0.00042634	-1.2189	-0.00060492	496.26374653556417	30.319	0.25311	30.319	30.234	30.487	0					11	6	2	0	0	0	0.10506	1	10926	10926		78.264	12.461	1	1593700			10649	3298	6701	6734	10814	10814					0.01780883409139733
FANDANKVL	9	Unmodified	_FANDANKVL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.F471Lfs*2|1|0.21|ENSG00000123104|chr12:26666048-26666048|A/-|frameshift_variant;ITPR2|p.L479Ffs*33|1|0.04|ENSG00000123104|chr12:26666026-26666027|-/GGAACAAA|frameshift_variant;ITPR2|p.D636Afs*14|1|0.07|ENSG00000123104|chr12:26658110-26658111|-/AATGG|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2637023925781	2	496.263999	990.513445	0.73932	0.0003669	-1.7256	-0.00085635	-0.98628	-0.00048946	496.2633750097832	30.309	0.24253	30.309	30.221	30.464	0					9	5	2	0	0	0	0.1424	1	11328	11328		69.628	0.78148	1	1805500			10650	3298	6701	6734	10815	10815					0.01780883409139733
FANDANKVL	9	Unmodified	_FANDANKVL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.F471Lfs*2|1|0.21|ENSG00000123104|chr12:26666048-26666048|A/-|frameshift_variant;ITPR2|p.L479Ffs*33|1|0.04|ENSG00000123104|chr12:26666026-26666027|-/GGAACAAA|frameshift_variant;ITPR2|p.D636Afs*14|1|0.07|ENSG00000123104|chr12:26658110-26658111|-/AATGG|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2633972167969	2	496.263999	990.513445	-0.76595	-0.00038011	-0.62631	-0.00031082	-1.3923	-0.00069093	496.26389681598573	30.325	0.24356	30.325	30.205	30.448	0					10	5	3	0	0	0	0.14578	1	11318	11318		68.846	22.874	1	193550			10651	3298	6701	6734	10816	10816					0.01780883409139733
FANETLRTL	9	Unmodified	_FANETLRTL_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1;ATP8B1|p.P792Hfs*8|1|0.34|ENSG00000081923|chr18:57662528-57662528|A/-|frameshift_variant;ATP8B1|p.I809Nfs*11|1|0.61|ENSG00000081923|chr18:57661455-57661456|-/T|frameshift_variant	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7902221679688	2	532.790381	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.835	1	35.835	35.335	36.335	0								0	0	0	0.077333	1	13871	13871		78.264	8.6362	1				10652	1666	6702	6735	10817	10817					0.03696841471969492
FANGHVNSV	9	Unmodified	_FANGHVNSV_					0	0	0		BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant;BAZ1A|p.R1409Kfs*11|1|0.36|ENSG00000198604|chr14:34761774-34761774|C/-|frameshift_variant;BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A;BAZ1A|p.E200Nfs*25|1|0.39|ENSG00000198604|chr14:34810976-34810976|T/-|frameshift_variant;BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant;BAZ1A|p.E440Gfs*4|1|0.21|ENSG00000198604|chr14:34794793-34794794|-/C|frameshift_variant;BAZ1A|p.F476Sfs*3|1|0.51|ENSG00000198604|chr14:34792858-34792858|A/-|frameshift_variant;BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant;BAZ1A|p.S944Qfs*34|1|0.38|ENSG00000198604|chr14:34775922-34775922|A/-|frameshift_variant	BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant	BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7315368652344	2	472.732866	943.451179	0.59035	0.00027908	-2.8	-0.0013236	-2.2096	-0.0010446	472.73137247864673	23.255	0.16687	23.255	23.145	23.312	0					6	3	2	0	0	0	0.023928	1	7998	7998		115.49	49.691	1	652290			10653	276	6703	6736	10818	10818					-0.022808429391830032
FANGRSTGL	9	Unmodified	_FANGRSTGL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7402648925781	2	461.740691	921.466829	-0.44532	-0.00020562	-0.82315	-0.00038008	-1.2685	-0.00058571	461.74059754123425	23.984	0.20474	23.984	23.89	24.095	0					12	6	3	0	0	0	0.22837	1	7002	7002		58.23	0.41864	1	283410			10654	4086	6704	6737	10819	10819					0.002954435778519837
FANGRSTGL	9	Unmodified	_FANGRSTGL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.7405090332031	2	461.740691	921.466829	-0.71517	-0.00033022	-0.28194	-0.00013018	-0.99711	-0.00046041	461.7406822387762	24.303	0.32841	24.303	24.204	24.533	0					13	7	4	0	0	0	0.070005	1	8148	8148		88.177	38.152	1	1259200			10655	4086	6704	6737	10820	10820					0.002954435778519837
FANGRSTGL	9	Unmodified	_FANGRSTGL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.74072265625	2	461.740691	921.466829	-0.82746	-0.00038207	0.1296	5.984E-05	-0.69787	-0.00032223	461.740749426834	24.021	0.19192	24.021	23.934	24.126	0					11	6	2	0	0	0	0.13267	1	7276	7276		71.877	27.5	1	470300			10656	4086	6704	6737	10821	10821					0.002954435778519837
FAPAAEKKV	9	Unmodified	_FAPAAEKKV_					0	0	0		GATAD1|p.S102F|1|0.2|ENSG00000157259|chr7:92448807-92448807|C/T|missense_variant	GATAD1|p.S102F|1|0.2|ENSG00000157259|chr7:92448807-92448807|C/T|missense_variant	GATAD1|p.S102F|1|0.2|ENSG00000157259|chr7:92448807-92448807|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7785949707031	2	480.779285	959.544017	0.92334	0.00044392	-2.0688	-0.00099464	-1.1455	-0.00055072	480.7783841187242	40.22	0.25992	40.22	40.048	40.308	0					9	6	2	0	0	0	0.5654	1	15964	15964		25.45	1.2474	1	60280			10657	11152	6705	6738	10822	10822					0.06262661794175983
FAPEKPGPQ	9	Unmodified	_FAPEKPGPQ_					0	0	0		ENST00000573886.5_1_17:4620541-4621453:+|nuORF;nc|ENSG00000141480|P32121-5|ARRB2;nc|ENSG00000141480|P32121-2|ARRB2;ENSG00000141480|ENST00000269260|ARRB2;nc|ENSG00000141480|P32121-3|ARRB2;nc|ENSG00000141480|P32121-4|ARRB2	ENST00000573886.5_1_17:4620541-4621453:+|nuORF	ENST00000573886.5_1_17:4620541-4621453:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7529602050781	2	485.753267	969.491981	0.65058	0.00031602	-1.328	-0.00064508	-0.67742	-0.00032906	485.7525798609969	42.403	0.26146	42.403	42.303	42.564	0					23	13	2	0	0	0	0.41113	1	16625	16625		40.778	0	1	165230			10658	4450	6706	6739	10823	10823					0.006014983804220719
FAPFAPWRSLV	11	Unmodified	_FAPFAPWRSLV_					0	0	0			REV__DENND4B|p.P955Lfs*5|1|0.53|ENSG00000198837|chr1:153934212-153934212|G/-|frameshift_variant	REV__DENND4B|p.P955Lfs*5|1|0.53|ENSG00000198837|chr1:153934212-153934212|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	645.8567504882812	2	645.853316	1289.69208	1.9441	0.0012556	2.0606	0.0013308	4.0047	0.0025864	645.8547446931528	43.107	0.25731	43.107	42.994	43.252	0					28	12	3	0	0	0	0.76233	1	16862	16862		21.686	1.689	1	394070	+		10659	12695	6707	6740	10824	10824					0.05881973048030886
FAPHTYALG	9	Unmodified	_FAPHTYALG_					0	0	0			REV__ENST00000478639.1_1_3:183883993-183884404:+|nuORF	REV__ENST00000478639.1_1_3:183883993-183884404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.750244140625	2	488.747985	975.481417	-0.18078	-8.8355E-05	3.8639	0.0018885	3.6831	0.0018001	488.7506433984317	26.882	0.16745	26.882	26.82	26.988	0					5	4	2	0	0	0	0.39123	1	8727	8727		42.474	1.6963	1	74520	+		10660	19565	6708	6741	10825	10825					-0.00730484274004084
FARIFDSK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))FARIFDSK_					1	0	0			REV__ENST00000445273.6_1_13:31711006-31711054:-|nuORF	REV__ENST00000445273.6_1_13:31711006-31711054:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2761840820312	2	513.274367	1024.53418	0.52682	0.0002704	2.0205	0.0010371	2.5473	0.0013075	513.2750564989798	18.442	0.17493	18.442	18.376	18.551	0					7	5	2	0	0	0	0.37144	1	4823	4823		74.255	7.8258	1	176320	+		10661	19272	6709	6742	10826	10826					0.02289473788800933
FARIQCLY	8	Unmodified	_FARIQCLY_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2664794921875	2	507.265487	1012.51642	1.2873	0.000653	0.88308	0.00044795	2.1704	0.001101	507.26597796337177	36.673	0.60676	36.673	36.462	37.068	0					30	12	4	0	0	0	0.6282	1	14354	14354		44.531	7.5026	1	3902300	+		10662	16509	6710	6743	10827	10827					0.010664352622939077
FARMANTIKQ	10	Unmodified	_FARMANTIKQ_					0	0	0			REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.8816223144531	3	393.881614	1178.62301	-0.66071	-0.00026024	0.89171	0.00035123	0.23101	9.0989E-05	393.8819154899151	30.84	0.31236	30.84	30.731	31.043	0					12	6	2	0	0	0	0.63851	1	11524	11524		29.551	7.865	1	142050	+		10663	16209	6711	6744	10828	10828					0.04084565756807024
FARRPLEL	8	Unmodified	_FARRPLEL_					0	0	0			REV__nc|ENSG00000112787|Q9HCM7|FBRSL1	REV__nc|ENSG00000112787|Q9HCM7|FBRSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2978820800781	2	501.298176	1000.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.644	1	41.644	41.144	42.144	0								0	0	0	1.7419	1	16371	16371		45.952	5.1738	1		+		10664	20979	6712	6745	10829	10829					0.08153172779645956
FASEHDPTPR	10	Unmodified	_FASEHDPTPR_					0	0	0			REV__ENST00000321248.4_1_10:134261270-134261444:+|nuORF	REV__ENST00000321248.4_1_10:134261270-134261444:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.77294921875	2	578.772719	1155.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.505	1	38.505	38.005	39.005	0								0	0	0	0.39665	1	14635	14635		31.53	2.3598	1		+		10665	18325	6713	6746	10830	10830					-0.04065821055883134
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2503662109375	2	483.250557	964.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.718	1	44.718	44.218	45.218	0								0	0	0	0.31838	1	16729	16729		31.53	1.2121	1				10666	4104	6714	6747	10831	10831					0.002897747979545784
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2500305175781	2	483.250557	964.486562	-0.59973	-0.00028982	0.82659	0.00039945	0.22686	0.00010963	483.2508202131258	44.583	0.13925	44.583	44.538	44.677	0					8	5	2	0	0	0	0.15163	1	17862	17862		67.494	14.142	1	33007			10667	4104	6714	6747	10832	10832					0.002897747979545784
FASGNVDFF	9	Unmodified	_FASGNVDFF_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2275085449219	2	502.229625	1002.4447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.926	1	28.926	28.426	29.426	0								0	0	0	0.28164	1	9079	9079		38.806	0	1		+		10668	17476	6715	6748	10833	10833					-0.05642780890570975
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant	ENSG00000242247|ENST00000263245|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.74249267578125	2	486.742899	971.471246	-1.2428	-0.00060494	0.91421	0.00044498	-0.32862	-0.00015995	486.7432805031504	28.208	0.30588	28.208	28.047	28.353	0					32	11	4	0	0	0	0.03984	1	9050	9050		99.375	32.946	1	945960			10669	7945	6716	6749	10834	10834					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant	ENSG00000242247|ENST00000263245|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.74273681640625	2	486.742899	971.471246	0.63775	0.00031042	-0.74876	-0.00036446	-0.11102	-5.4037E-05	486.7424564044704	28.473	0.45416	28.473	28.224	28.678	0					24	9	4	0	0	0	0.036372	1	10446	10446		102.77	28.518	1	3848100			10670	7945	6716	6749	10835	10835					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant	ENSG00000242247|ENST00000263245|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7427062988281	2	486.742899	971.471246	-0.23563	-0.00011469	-0.16131	-7.8518E-05	-0.39694	-0.00019321	486.74280172587686	28.283	0.27032	28.283	28.103	28.374	0					17	6	3	0	0	0	0.030949	1	9340	9340		108.09	31.313	1	603390			10671	7945	6716	6749	10836	10836					-0.01563091999230437
FASKALEL	8	Unmodified	_FASKALEL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.75286865234375	2	439.752736	877.490919	-0.029152	-1.282E-05	0.072588	3.1921E-05	0.043437	1.9101E-05	439.7527872025461	36.361	0.15549	36.361	36.329	36.485	0					6	4	2	0	0	0	0.24425	1	13716	13716		111.65	20.872	1	63641			10672	2886	6717	6750	10837	10837					0.04727284011505617
FASKALEL	8	Unmodified	_FASKALEL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.7525634765625	2	439.752736	877.490919	-0.55884	-0.00024575	0.04185	1.8404E-05	-0.51699	-0.00022735	439.7527744072629	36.293	0.31244	36.293	36.183	36.496	0					12	6	3	0	0	0	0.23527	1	14100	14100		133.81	48.453	1	210990			10673	2886	6717	6750	10838	10838					0.04727284011505617
FASLALEGGQF	11	Unmodified	_FASLALEGGQF_					0	0	0			REV__ENSG00000128039|ENST00000264228|SRD5A3	REV__ENSG00000128039|ENST00000264228|SRD5A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.2904052734375	2	570.290214	1138.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.246	1	28.246	27.746	28.746	0								0	0	0	0.30435	1	10328	10328		51.528	0.33506	1		+		10674	14509	6718	6751	10839	10839					0.002134217521188475
FASLQSPAVE	10	Unmodified	_FASLQSPAVE_					0	0	0			REV__ENST00000568175.1_3_16:29630108-29634155:-|nuORF	REV__ENST00000568175.1_3_16:29630108-29634155:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7681884765625	2	524.769114	1047.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.971	1	49.971	49.471	50.471	0								0	0	0	0.3805	1	19746	19746		36.447	0.82846	1		+		10675	16597	6719	6752	10840	10840					0.0018144634370855783
FASMVHILM	9	Unmodified	_FASMVHILM_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP;CMIP|p.G552C|1|0.45|ENSG00000153815|chr16:81699700-81699700|G/T|missense_variant;ENST00000565680.1_1_16:81725275-81734153:+|nuORF	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7708129882812	2	524.769548	1047.52454	1.6267	0.00085362	0.80969	0.0004249	2.4363	0.0012785	524.769988562027	30.969	0.41061	30.969	30.763	31.174	0					28	8	4	0	0	0	0.097811	1	11492	11492		79.939	79.939	1	3802600			10676	5060	6720	6753	10841	10841					0.0026824618742011808
FASPGQGQI	9	Unmodified	_FASPGQGQI_					0	0	0		HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|25|2|anti-sense	HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|25|2|anti-sense	HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|25|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.72930908203125	2	452.729792	903.445031	0.87746	0.00039725	-1.6345	-0.00073999	-0.75704	-0.00034273	452.72883309957433	36.726	0.26686	36.726	36.613	36.88	0					18	5	4	0	0	0	0.062676	1	14308	14308		90.777	3.0224	1	186640			10677	11204	6721	6754	10842	10842					-0.010553611707109667
FASQQGMTA	9	Unmodified	_FASQQGMTA_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7132263183594	2	470.713285	939.412016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.462	1	27.462	26.962	27.962	0								0	0	0	0.077333	1	8465	8465		78.264	19.482	1				10678	3623	6722	6755	10843	10843					-0.06011311285055854
FASQQGMTA	9	Unmodified	_FASQQGMTA_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7132263183594	2	470.713285	939.412016	0.15598	7.3421E-05	-0.48419	-0.00022792	-0.32821	-0.00015449	470.713085568361	27.754	0.26174	27.754	27.583	27.845	0					10	6	2	0	0	0	0.076532	1	9706	9706		85.862	29.428	1	230670			10679	3623	6722	6755	10844	10844					-0.06011311285055854
FASQQGMTA	9	Unmodified	_FASQQGMTA_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7127990722656	2	470.713285	939.412016	-0.60711	-0.00028578	-0.093722	-4.4116E-05	-0.70084	-0.00032989	470.713174620927	27.497	0.1742	27.497	27.414	27.588	0					8	4	3	0	0	0	0.27123	1	9014	9014		53.089	8.9722	1	86766			10680	3623	6722	6755	10845	10845					-0.06011311285055854
FASQQGMTA	9	Unmodified	_FASQQGMTA_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7124938964844	2	470.713285	939.412016	0.54944	0.00025863	-1.9713	-0.00092794	-1.4219	-0.00066931	470.71235942828383	27.654	0.41716	27.654	27.493	27.91	0					15	8	3	0	0	0	0.054723	1	9936	9936		93.598	42.262	1	540830			10681	3623	6722	6755	10846	10846					-0.06011311285055854
FASSLVSGL	9	Unmodified	_FASSLVSGL_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.7420654296875	2	440.742368	879.470183	-0.32494	-0.00014321	-1.531	-0.0006748	-1.856	-0.00081801	440.74203557735956	30.872	0.09285	30.872	30.827	30.92	0					4	2	2	0	0	0	0.23186	1	11597	11597		57.811	2.3071	1	78784			10682	5833	6723	6756	10847	10847					0.025626936318644766
FASSQPIKA	9	Unmodified	_FASSQPIKA_					0	0	0			REV__ENSG00000188771|ENST00000338832|PLET1	REV__ENSG00000188771|ENST00000338832|PLET1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.76043701171875	2	474.761092	947.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.014	1	35.014	34.514	35.514	0								0	0	0	0.1836	1	12440	12440		53.351	10.955	1		+		10683	17191	6724	6757	10848	10848					0.031777848974684275
FASVGYAI	8	Unmodified	_FASVGYAI_					0	0	0			REV__ENSG00000102934|ENST00000219207|PLLP	REV__ENSG00000102934|ENST00000219207|PLLP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.2186584472656	2	414.218529	826.422505	1.0329	0.00042783	-1.6358	-0.00067757	-0.60293	-0.00024974	414.21799873877865	41.384	0.16352	41.384	41.309	41.473	0					16	8	2	0	0	0	0.55361	1	15723	15723		54.765	2.4655	1	89761	+		10684	13656	6725	6758	10849	10849					0.002350394316636084
FATARTPDP	9	Unmodified	_FATARTPDP_					0	0	0		ENST00000594943.1_1_19:58038790-58063865:+|nuORF	ENST00000594943.1_1_19:58038790-58063865:+|nuORF	ENST00000594943.1_1_19:58038790-58063865:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2478942871094	2	488.248349	974.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.006	1	16.006	15.506	16.506	0								0	0	0	0.33029	1	3701	3701		29.17	2.374	1				10685	10992	6726	6759	10850	10850					-0.0061168962496367385
FATGWIFA	8	Unmodified	_FATGWIFA_					0	0	0			REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1	REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7336730957031	2	456.734346	911.454139	-0.43209	-0.00019735	-0.7381	-0.00033712	-1.1702	-0.00053447	456.7340187063765	37.064	0.84898	37.064	36.778	37.627	0					30	17	2	0	0	0	0.527	1	14499	14499		57.453	6.1172	1	238610	+		10686	21917	6727	6760	10851	10851					-0.005129678143930505
FATHPTTGL	9	Unmodified	_FATHPTTGL_					0	0	0			REV__ENST00000478742.1_1_1:203148575-203149107:-|nuORF	REV__ENST00000478742.1_1_1:203148575-203149107:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7455749511719	2	472.745442	943.476331	-1.4877	-0.00070329	0.88545	0.00041859	-0.60223	-0.0002847	472.7458729993894	33.541	0.26838	33.541	33.461	33.73	0					16	10	2	0	0	0	0.43426	1	11257	11257		38.806	0	1	162060	+		10687	19567	6728	6761	10852	10852					0.002332118633717073
FATIKSASL	9	Unmodified	_FATIKSASL_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2711181640625	2	469.271293	936.528032	0.22718	0.00010661	-0.12331	-5.7867E-05	0.10387	4.8742E-05	469.2711225793402	33.804	0.41547	33.804	33.739	34.154	0					21	11	3	0	0	0	0.25761	1	12549	12549		54.722	3.3869	1	260170			10688	3964	6729	6762	10853	10853					0.057229555572689605
FATIKSASL	9	Unmodified	_FATIKSASL_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2713928222656	2	469.271293	936.528032	-0.52314	-0.00024549	0.84117	0.00039474	0.31803	0.00014924	469.2717191449011	33.788	0.12535	33.788	33.7	33.825	0					8	3	3	0	0	0	0.36135	1	12870	12870		45.022	7.2107	1	231970			10689	3964	6729	6762	10854	10854					0.057229555572689605
FATILTYF	8	Unmodified	_FATILTYF_					0	0	0			REV__NGF|p.F113Sfs*45|1|0.22|ENSG00000134259|chr1:115286460-115286460|G/-|frameshift_variant	REV__NGF|p.F113Sfs*45|1|0.22|ENSG00000134259|chr1:115286460-115286460|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.26416015625	2	488.262936	974.51132	-0.19922	-9.7269E-05	2.8938	0.001413	2.6946	0.0013157	488.2642900852298	13.653	0.058132	13.653	13.634	13.692	0					5	3	2	0	0	0	0.68754	1	2778	2778		35.201	3.2459	1	69207	+		10690	14734	6730	6763	10855	10855					0.023044546713322234
FATRPTAAA	9	Unmodified	_FATRPTAAA_					0	0	0			REV__ENST00000477043.5_1_10:5727032-5751560:+|nuORF	REV__ENST00000477043.5_1_10:5727032-5751560:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2456359863281	2	453.245609	904.476666	0.68991	0.0003127	-1.9093	-0.0008654	-1.2194	-0.0005527	453.24492547716295	28.529	0.16784	28.529	28.407	28.575	0					7	4	2	0	0	0	0.4966	1	10103	10103		32.812	1.2826	1	161030	+		10691	19545	6731	6764	10856	10856					0.02060631583231043
FATRSLDI	8	Unmodified	_FATRSLDI_					0	0	0		nc|ENSG00000106701|Q9BXM9-2|FSD1L;ENSG00000106701|ENST00000481272|FSD1L;ENST00000480279.1_1_9:108226543-108246709:+|nuORF;nc|ENSG00000106701|Q9BXM9-3|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7523193359375	2	461.753267	921.491981	0.10487	4.8423E-05	-0.88211	-0.00040732	-0.77725	-0.0003589	461.75268215457487	32.785	0.14522	32.785	32.699	32.844	0					9	5	2	0	0	0	0.58597	1	10626	10626		51.335	6.9583	1	62350			10692	2456	6732	6765	10857	10857					0.028094983804294316
FATTNQISL	9	Unmodified	_FATTNQISL_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7638244628906	2	497.763832	993.513111	-0.28287	-0.0001408	0.18685	9.3005E-05	-0.096023	-4.7797E-05	497.7638824920123	43.221	0.20541	43.221	43.147	43.353	0					23	12	3	0	0	0	0.50761	1	16318	16318		31.634	0.10446	1	147010			10693	4897	6733	6766	10858	10858					0.016094636893058123
FATTNQISL	9	Unmodified	_FATTNQISL_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7638244628906	2	497.763832	993.513111	0.80275	0.00039958	0.078871	3.9259E-05	0.88162	0.00043884	497.76389133434435	43.198	0.23492	43.198	43.131	43.366	0					25	13	3	0	0	0	0.11898	1	16909	16909		75.043	0.78827	1	131780			10694	4897	6733	6766	10859	10859					0.016094636893058123
FATTNQISL	9	Unmodified	_FATTNQISL_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.76336669921875	2	497.763832	993.513111	2.914	0.0014505	-2.9175	-0.0014522	-0.003457	-1.7208E-06	497.76248653786706	43.142	0.38339	43.142	42.946	43.329	0					25	12	3	0	0	0	0.067603	1	17244	17244		89.029	11.711	1	516410			10695	4897	6733	6766	10860	10860					0.016094636893058123
FAVAIKNVN	9	Unmodified	_FAVAIKNVN_					0	0	0			REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2843017578125	2	488.284734	974.554916	-0.078146	-3.8157E-05	-0.53146	-0.0002595	-0.6096	-0.00029766	488.28430562756495	35.559	0.15769	35.559	35.479	35.637	0					14	8	2	0	0	0	0.49003	1	11645	11645		33.516	4.366	1	86230	+		10696	16581	6734	6767	10861	10861					0.06662064168460802
FAVAIKNVN	9	Unmodified	_FAVAIKNVN_					0	0	0			REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.28466796875	2	488.284734	974.554916	0.75206	0.00036722	-1.9147	-0.0009349	-1.1626	-0.00056768	488.2836573360515	35.831	0.46079	35.831	35.569	36.03	0					28	12	3	0	0	0	0.50461	1	13459	13459		31.955	1.4512	1	788350	+		10697	16581	6734	6767	10862	10862					0.06662064168460802
FAVAPNQNL	9	Unmodified	_FAVAPNQNL_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2590026855469	2	487.258717	972.50288	-0.05712	-2.7832E-05	0.21116	0.00010289	0.15404	7.5059E-05	487.2587883903301	38.897	0.24725	38.897	38.825	39.072	0					26	14	3	0	0	0	0.077948	1	12656	12656		85.359	39.408	1	286240			10698	4485	6735	6768	10863	10863					0.015529007547002038
FAVAPNQNL	9	Unmodified	_FAVAPNQNL_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.76055908203125	2	487.258717	972.50288	-1.2446	-0.00060643	1.1155	0.00054353	-0.12907	-6.2893E-05	487.2592040354675	39.012	0.36409	39.012	38.884	39.248	0					42	20	3	0	0	0	0.023949	1	13111	13111		115.46	56.677	1	781010			10699	4485	6735	6768	10864	10864					0.015529007547002038
FAVAPNQNL	9	Unmodified	_FAVAPNQNL_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2586364746094	2	487.258717	972.50288	0.63167	0.00030779	-1.144	-0.00055744	-0.51236	-0.00024965	487.2581514386617	39.224	0.54385	39.224	38.919	39.463	0					49	18	4	0	0	0	0.077948	1	15381	15381		85.359	16.875	1	5500300			10700	4485	6735	6768	10865	10865					0.015529007547002038
FAVAPNQNL	9	Unmodified	_FAVAPNQNL_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2590026855469	2	487.258717	972.50288	-0.22876	-0.00011147	-0.02056	-1.0018E-05	-0.24932	-0.00012148	487.2586303216751	38.983	0.30148	38.983	38.867	39.169	0					38	15	3	0	0	0	0.18605	1	13902	13902		63.306	19.189	1	465720			10701	4485	6735	6768	10866	10866					0.015529007547002038
FAVASVGHGVF	11	Unmodified	_FAVASVGHGVF_					0	0	0		SUSD6|p.R58Gfs*7|1|0.22|ENSG00000100647|chr14:69703441-69703441|C/-|frameshift_variant;SUSD6|p.L44Pfs*33|1|0.41|ENSG00000100647|chr14:69703398-69703399|-/C|frameshift_variant;ENST00000556993.1_1_14:70125309-70170323:+|nuORF;ENSG00000100647|ENST00000342745|SUSD6	SUSD6|p.R58Gfs*7|1|0.22|ENSG00000100647|chr14:69703441-69703441|C/-|frameshift_variant	SUSD6|p.R58Gfs*7|1|0.22|ENSG00000100647|chr14:69703441-69703441|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.787841796875	2	545.787641	1089.56073	0.41487	0.00022643	0.18353	0.00010017	0.5984	0.0003266	545.7877816809189	42.074	0.34335	42.074	41.979	42.322	0					42	17	4	0	0	0	0.61618	1	15950	15950		35.618	1.4457	1	246030			10702	2054	6736	6769	10867	10867					0.01953162680160858
FAVFIFMTY	9	Unmodified	_FAVFIFMTY_					0	0	0		nc|ENSG00000120217|Q9NZQ7-2|CD274;nc|ENSG00000120217|Q9NZQ7-3|CD274;nc|ENSG00000120217|Q9NZQ7-4|CD274;CD274|p.K271Hfs*3|1|0.06|ENSG00000120217|chr9:5466789-5466790|-/CATTTGT|frameshift_variant;ENSG00000120217|ENST00000381577|CD274	nc|ENSG00000120217|Q9NZQ7-2|CD274	nc|ENSG00000120217|Q9NZQ7-2|CD274	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.7852172851562	2	569.785721	1137.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.631	1	31.631	31.131	32.131	0								0	0	0	0.31623	1	10180	10180		31.955	1.4512	1				10703	426	6737	6770	10868	10868					-0.006386431379269197
FAVGWGPIPW	10	Unmodified	_FAVGWGPIPW_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2959594726562	2	565.295102	1128.57565	3.471	0.0019621	-1.9046	-0.0010767	1.5663	0.00088544	565.2937934788272	26.829	0.31503	26.829	26.772	27.087	0					20	6	5	0	0	0	0.3122	1	9538	9538		65.897	9.4637	1	3030800			10704	4118	6738	6771	10869	10869					0.016506545481206558
FAVIGRSSL	9	Unmodified	_FAVIGRSSL_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48755439-48768558:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2762451171875	2	475.276909	948.539266	-0.21237	-0.00010093	-0.22289	-0.00010593	-0.43526	-0.00020687	475.27680445437466	37.448	0.1748	37.448	37.357	37.531	0					14	9	2	0	0	0	0.46194	1	12251	12251		36.447	0.82846	1	246960			10705	2554	6739	6772	10870	10870					0.06293777651421806
FAVISVNKF	9	Unmodified	_FAVISVNKF_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7953491210938	2	512.794935	1023.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.896	1	27.896	27.396	28.396	0								0	0	0	0.3428	1	9186	9186		26.693	1.1189	1		+		10706	14058	6740	6773	10871	10871					0.0644723482827203
FAVLRGAVL	9	Unmodified	_FAVLRGAVL_					0	0	0		SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant;nc|ENSG00000172830|Q8TE77-4|SSH3;nc|ENSG00000172830|Q8TE77-2|SSH3;SSH3|p.E492*|1|0.12|ENSG00000172830|chr11:67310124-67310125|-/C|frameshift_variant;ENSG00000172830|ENST00000308127|SSH3	SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant	SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2972717285156	2	473.297645	944.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.893	1	43.893	43.393	44.393	0								0	0	0	0.24724	1	17136	17136		44.117	10.601	1				10707	6389	6741	6774	10872	10872					0.10622958410738192
FAVQNPLSN	9	Unmodified	_FAVQNPLSN_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1;REV__nc|ENSG00000100731|Q96RV3-2|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2574768066406	2	495.256174	988.497795	-0.40428	-0.00020022	2.789	0.0013813	2.3847	0.0011811	495.25768906460405	40.912	0.28	40.912	40.795	41.075	0					15	8	3	0	0	0	0.41113	1	15562	15562		40.778	8.8233	1	298300	+		10708	13572;20236	6742	6775	10873	10873					0.0030859689209137287
FAVRVGIPS	9	Unmodified	_FAVRVGIPS_					0	0	0		tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.27972412109375	2	473.279452	944.544351	-0.53532	-0.00025336	0.24542	0.00011615	-0.28991	-0.00013721	473.27947381892926	40.072	0.33525	40.072	39.908	40.243	0					22	13	2	0	0	0	0.59802	1	15242	15242		21.96	1.013	1	81926			10709	23029	6743	6776	10874	10874					0.06986081514037323
FAWGALGL	8	Unmodified	_FAWGALGL_					0	0	0		ENST00000369842.8_1_X:153609573-153609861:+|nuORF	ENST00000369842.8_1_X:153609573-153609861:+|nuORF	ENST00000369842.8_1_X:153609573-153609861:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.730712890625	2	417.729064	833.443575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.161	1	35.161	34.661	35.661	0								0	0	0	1.7419	1	13549	13549		43.626	0	1				10710	8948	6744	6777	10875	10875					0.020190495311680934
FAYNGKKAK	9	Unmodified	_FAYNGKKAK_					0	0	0			REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.78759765625	2	513.790184	1025.56581	1.4678	0.00075416	-2.4584	-0.0012631	-0.99053	-0.00050893	514.2906662777426	14.353	0.36939	14.353	14.188	14.558	0					14	7	3	0	0	0	0.19605	1	3539	3539		29.15	0	1	369800	+		10711	16896	6745	6778	10876	10876					0.05405466542742943
FAYRSDTY	8	Unmodified	_FAYRSDTY_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7330627441406	2	511.732532	1021.45051	0.033614	1.7201E-05	0.69112	0.00035367	0.72474	0.00037087	511.73297870915275	37.227	0.31366	37.227	37.171	37.484	0					10	6	2	0	0	0	0.63077	1	14570	14570		44.117	3.5442	1	128270	+		10712	20731	6746	6779	10877	10877					-0.059356823789016744
FCACAVGLIAV	11	Unmodified	_FCACAVGLIAV_					0	0	0		CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant;ENSG00000135404|ENST00000257857|CD63	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7765502929688	2	533.774831	1065.53511	2.2974	0.0012263	1.6804	0.00089696	3.9778	0.0021233	533.7757021214213	35.605	0.64936	35.605	35.457	36.106	0					34	17	3	0	0	0	0.42078	1	13424	13424		50.025	4.0523	1	663530			10713	431	6747	6780	10878	10878					0.004962288418482785
FCAGLYKQ	8	Unmodified	_FCAGLYKQ_					0	0	0			REV__ENST00000539664.2_1_7:28994760-28994901:-|nuORF	REV__ENST00000539664.2_1_7:28994760-28994901:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2328796386719	2	465.231113	928.447674	0.67815	0.0003155	2.6436	0.0012299	3.3217	0.0015454	465.23251817277315	19.372	2.0096	19.372	19.264	21.273	0					98	40	4	0	0	0	0.57802	1	6121	6121		52.299	0	1	44271000	+		10714	20125	6748	6781	10879	10879					-0.019412290374248187
FCAKKFAD	8	Unmodified	_FCAKKFAD_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;ENST00000487284.2_1_7:101917466-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2328186035156	2	465.231113	928.447674	2.616	0.0012171	0.82571	0.00038415	3.4417	0.0016012	465.2315622729452	19.369	3.9572	19.369	19.26	23.218	0					153	79	4	0	0	0	0.54629	1	5983	5983		55.504	8.7378	1	24032000			10715	10693	6749	6782	10880	10880					-0.019412290374248187
FCEEFGKKY	9	Carbamidomethyl (C)	_FC(Carbamidomethyl (C))EEFGKKY_	FC(1)EEFGKKY		FC(74)EEFGKKY		0	1	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.278076171875	2	604.276249	1206.53795	3.0263	0.0018287	0.015094	9.1212E-06	3.0414	0.0018378	604.2762828275144	21.214	0.61161	21.214	21.11	21.721	0					26	12	4	0	0	0	0.12239	1	6884	6884		74.255	17.534	1	2475300			10716	6249	6750	6783	10881	10881	266				-0.05706224499658674
FCFHLRIF	8	Carbamidomethyl (C)	_FC(Carbamidomethyl (C))FHLRIF_	FC(1)FHLRIF		FC(55)FHLRIF		0	1	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.2965087890625	2	570.294579	1138.57461	3.4254	0.0019535	-0.48862	-0.00027866	2.9368	0.0016748	570.2942890099949	45.44	0.32862	45.44	45.341	45.67	0					18	12	2	0	0	0	0.55361	1	18192	18192		54.765	7.1073	1	431130			10717	3311	6751	6784	10882	10882	129				0.01086116907572432
FCFRKQIN	8	Unmodified	_FCFRKQIN_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2808227539062	2	528.276386	1054.53822	1.7485	0.00092369	4.275	0.0022584	6.0235	0.0031821	528.2792904256528	43.687	0.22754	43.687	43.609	43.837	0					21	12	2	0	0	0	0.55361	1	17072	17072		54.765	6.8491	1	73514	+		10718	13209	6752	6785	10883	10883					0.013132400108816
FCGSCYDE	8	Unmodified	_FCGSCYDE_					0	0	0			REV__nc|ENSG00000169064|A8MT70-3|ZBBX	REV__nc|ENSG00000169064|A8MT70-3|ZBBX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2123107910156	2	462.149129	922.283704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.952	1	19.952	19.452	20.452	0								0	0	0	1.7419	1	5494	5494		12.959	4.1369	1		+		10719	16291	6753	6786	10884	10884					-0.18054614590482743
FCHNFHKLN	9	Unmodified	_FCHNFHKLN_					0	0	0		CAPN6|p.R332H|1|0.07|ENSG00000077274|chrX:111251080-111251080|C/T|missense_variant	CAPN6|p.R332H|1|0.07|ENSG00000077274|chrX:111251080-111251080|C/T|missense_variant	CAPN6|p.R332H|1|0.07|ENSG00000077274|chrX:111251080-111251080|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.2752075195312	2	580.276918	1158.53928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.085	1	18.085	17.585	18.585	0								0	0	0	0.39312	1	5225	5225		12.959	0	1				10720	369	6754	6787	10885	10885					-0.03364545620206627
FCHQHGLF	8	Unmodified	_FCHQHGLF_					0	0	0		ZNF749|p.T217Nfs*3|1|0.5|ENSG00000186230|chr19:57443791-57443792|-/A|frameshift_variant;ENSG00000186230|ENST00000334181|ZNF749	ZNF749|p.T217Nfs*3|1|0.5|ENSG00000186230|chr19:57443791-57443792|-/A|frameshift_variant	ZNF749|p.T217Nfs*3|1|0.5|ENSG00000186230|chr19:57443791-57443792|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7270812988281	2	494.726529	987.438506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.284	1	20.284	19.784	20.784	0								0	0	0	1.7419	1	5636	5636		39.021	0	1				10721	7126	6755	6788	10886	10886					-0.05571577603075184
FCIPLYVPY	9	Unmodified	_FCIPLYVPY_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.78759765625	2	557.785721	1113.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.683	1	48.683	48.183	49.183	0								0	0	0	0.28996	1	19329	19329		21.702	0	1				10722	2097	6756	6789	10887	10887					0.0046535686205970705
FCLLLRAIN	9	Unmodified	_FCLLLRAIN_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8123779296875	2	531.810062	1061.60557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.203	1	47.203	46.703	47.703	0								0	0	0	0.063485	1	18864	18864		82.305	21.333	1				10723	11686	6757	6790	10888	10888					0.07723270221822531
FCLQGKAN	8	Unmodified	_FCLQGKAN_					0	0	0		nc|ENSG00000081985|Q99665-2|IL12RB2;nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.7209777832031	2	440.720913	879.427273	-0.55818	-0.000246	0.25245	0.00011126	-0.30574	-0.00013474	440.72104507371563	28.264	0.4581	28.264	28.032	28.49	0					22	11	3	0	0	0	0.67475	1	9343	9343		37.028	7.1869	1	206230			10724	1667	6758	6791	10889	10889					-0.017263996972246787
FCLSLKEEL	9	Unmodified	_FCLSLKEEL_					0	0	0			REV__FEZ2|p.N313Tfs*12|1|0.12|ENSG00000171055|chr2:36558479-36558479|T/-|frameshift_variant	REV__FEZ2|p.N313Tfs*12|1|0.12|ENSG00000171055|chr2:36558479-36558479|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2857055664062	2	541.283543	1080.55253	3.5281	0.0019097	0.82902	0.00044874	4.3571	0.0023584	541.2838568031875	28.885	0.46522	28.885	28.775	29.241	0					33	9	5	0	0	0	0.02953	1	10526	10526		93.195	8.2799	1	6224000	+		10725	16396	6759	6792	10890	10890					0.015478476484986459
FCPAAPLEPFK	11	Unmodified	_FCPAAPLEPFK_					0	0	0			REV__ENSG00000212864|ENST00000391553|RNF208	REV__ENSG00000212864|ENST00000391553|RNF208	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.2120666503906	3	407.210849	1218.61072	3.0723	0.0012511	-0.17027	-6.9336E-05	2.902	0.0011817	407.21072840015955	25.29	0.76059	25.29	25.076	25.837	0					31	13	3	0	0	0	0.79011	1	8823	8823		17.167	1.8336	1	1099700	+		10726	17552	6760	6793	10891	10891					0.010155292937497507
FCPVGQFILQ	10	Unmodified	_FCPVGQFILQ_					0	0	0		nc|ENSG00000196950|Q9ULF5-2|SLC39A10;ENST00000430412.5_1_2:196521853-196599762:+|nuORF;ENSG00000196950|ENST00000359634|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.2977294921875	2	576.299527	1150.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.392	1	40.392	39.892	40.892	0								0	0	0	0.37816	1	14356	14356		37.159	6.6555	1				10727	7407	6761	6794	10892	10892					0.015232601223260644
FCQCTFLF	8	2 Carbamidomethyl (C)	_FC(Carbamidomethyl (C))QC(Carbamidomethyl (C))TFLF_	FC(1)QC(1)TFLF		FC(96)QC(96)TFLF		0	2	0			REV__ENST00000553148.1_1_12:100711499-100717500:+|nuORF	REV__ENST00000553148.1_1_12:100711499-100717500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.742431640625	2	561.740988	1121.46742	1.789	0.0010049	0.74661	0.0004194	2.5356	0.0014243	561.7415704024658	26.767	0.84392	26.767	26.628	27.472	0					44	20	4	0	0	0	0.25916	1	9262	9262		96.048	19.201	1	2089100	+		10728	20217	6762	6795	10893	10893	710;711				-0.08845221088972721
FCSVLGLHR	9	Unmodified	_FCSVLGLHR_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.52020263671875	3	344.520016	1030.53822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.845	1	18.845	18.345	19.345	0								0	0	0	0.35899	1	5719	5719		17.468	0.75062	1		+		10729	17280	6763	6796	10894	10894					0.024172400108682268
FCTCLVKGPL	10	Unmodified	_FCTCLVKGPL_					0	0	0			REV__ENST00000438023.5_2_9:6757647-6757842:+|nuORF	REV__ENST00000438023.5_2_9:6757647-6757842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2901611328125	2	540.782656	1079.55076	1.9987	0.0010809	4.146	0.0022421	6.1447	0.0033229	541.2886476323143	19.322	0.31289	19.322	19.214	19.527	0					9	6	2	0	0	0	0.47859	1	6102	6102		47.657	1.7054	1	938390	+		10730	19219	6764	6797	10895	10895					0.014165153588919566
FCVWAQPPC	9	Unmodified	_FCVWAQPPC_					0	0	0			REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7335815429688	2	525.730423	1049.44629	0.5834	0.00030671	3.021	0.0015882	3.6044	0.0018949	525.7322382316274	30.795	0.56442	30.795	30.529	31.093	0					19	11	3	0	0	0	0.41354	1	11377	11377		40.573	0	1	265690	+		10731	17894	6765	6798	10896	10896					-0.07645186397826365
FDAAKNLVW	9	Unmodified	_FDAAKNLVW_					0	0	0		TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant;nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15	TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant	TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2840576171875	2	532.282192	1062.54983	0.12347	6.5721E-05	1.0556	0.00056188	1.1791	0.0006276	532.2825324187888	44.429	0.47103	44.429	44.218	44.689	0					50	28	2	0	0	0	0.55282	1	16607	16607		26.796	3.7536	1	80076			10732	3876	6766	6799	10897	10897					0.02105760305835247
FDAPKPHIMQ	10	Unmodified	_FDAPKPHIMQ_					0	0	0			REV__ENSG00000149262|ENST00000534064|INTS4	REV__ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.3016357421875	2	592.300059	1182.58556	1.5273	0.00090459	0.7287	0.00043161	2.256	0.0013362	592.3005679352771	34.822	0.89305	34.822	34.686	35.579	0					80	25	5	0	0	0	0.47859	1	13432	13432		47.657	1.7054	1	1927700	+		10733	15409	6767	6800	10898	10898					0.0015747449119771773
FDAPPPSL	8	Unmodified	_FDAPPPSL_					0	0	0			REV__ENST00000355852.6_1_3:51991634-51991799:-|nuORF	REV__ENST00000355852.6_1_3:51991634-51991799:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2163391113281	2	422.215986	842.417419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.178	1	40.178	39.678	40.678	0								0	0	0	1.7419	1	15933	15933		60.294	15.763	1		+		10734	18513	6768	6801	10899	10899					-0.0100926443096796
FDDALFKSF	9	Unmodified	_FDDALFKSF_					0	0	0			REV__ENSG00000168434|ENST00000307149|COG7	REV__ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2681884765625	2	545.266207	1088.51786	1.9268	0.0010506	1.7785	0.00096978	3.7054	0.0020204	545.266991688828	39.475	0.34846	39.475	39.36	39.709	0					17	12	2	0	0	0	0.27249	1	15506	15506		52.937	1.6012	1	109280	+		10735	16259	6769	6802	10900	10900					-0.02285652167961416
FDDLPARFGY	10	Unmodified	_FDDLPARFGY_					0	0	0		ENST00000491086.5_1_3:149531035-149619859:+|nuORF;RNF13|p.G168Afs*5|1|0.19|ENSG00000082996|chr3:149902156-149902156|A/-|frameshift_variant;RNF13|p.L223Ffs*46|1|0.02|ENSG00000082996|chr3:149921193-149921194|-/TT|frameshift_variant;ENSG00000082996|ENST00000392894|RNF13	ENST00000491086.5_1_3:149531035-149619859:+|nuORF	ENST00000491086.5_1_3:149531035-149619859:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.7920532226562	2	600.787838	1199.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.997	1	45.997	45.497	46.497	0								0	0	0	0.30913	1	18422	18422		49.442	7.0454	1				10736	1686	6770	6803	10901	10901					-0.030674623906634224
FDFRGARIL	9	Unmodified	_FDFRGARIL_					0	0	0		ENTPD2|p.G204Vfs*171|4|0.17|ENSG00000054179|chr9:137051065-137051065|C/-|frameshift_variant;nc|ENSG00000054179|Q9Y5L3-3|ENTPD2;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;ENSG00000054179|ENST00000355097|ENTPD2	ENTPD2|p.G204Vfs*171|4|0.17|ENSG00000054179|chr9:137051065-137051065|C/-|frameshift_variant	ENTPD2|p.G204Vfs*171|4|0.17|ENSG00000054179|chr9:137051065-137051065|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8094482421875	2	547.808908	1093.60326	0.32419	0.0001776	0.54796	0.00030018	0.87215	0.00047777	547.8092467664789	28.175	0.63337	28.175	27.931	28.565	0					32	13	3	0	0	0	0.44593	1	10417	10417		10.866	0	1	495370			10737	1266	6771	6804	10902	10902					0.06020557808369631
FDGGGGGGT	9	Unmodified	_FDGGGGGGT_					0	0	0			REV__nc|ENSG00000245848|P49715-2|CEBPA	REV__nc|ENSG00000245848|P49715-2|CEBPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.64892578125	2	362.648468	723.282382	1.3751	0.00049868	-1.3665	-0.00049556	0.0086049	3.1206E-06	362.6481181729108	49.857	0.45239	49.857	49.733	50.185	0					34	19	3	0	0	0	0.61124	1	18735	18735		12.207	0	1	395550	+		10738	17712	6772	6805	10903	10903					-0.09032744572709817
FDGLEYDY	8	Unmodified	_FDGLEYDY_					0	0	0		OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.20867919921875	2	511.211098	1020.40764	-0.3815	-0.00019503	-2.5892	-0.0013236	-2.9707	-0.0015186	511.2101138303073	40.661	0.19266	40.661	40.589	40.782	0					25	11	3	0	0	0	0.64096	1	13583	13583		42.474	1.9018	1	182220			10739	5839	6773	6806	10904	10904					-0.10174497227001211
FDGRVVAK	8	Unmodified	_FDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.2557067871094	2	446.255977	890.497401	0.15552	6.9402E-05	0.23027	0.00010276	0.38579	0.00017216	446.25601111778667	30.767	0.15835	30.767	30.703	30.861	0					10	6	2	0	0	0	0.27512	1	9831	9831		90.777	8.4716	1	76798			10740	4531	6774	6807	10905	10905					0.04777221962888234
FDGRVVAK	8	Unmodified	_FDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.25579833984375	2	446.255977	890.497401	0.013886	6.1967E-06	-0.52923	-0.00023617	-0.51535	-0.00022998	446.2556885278869	31.061	0.75168	31.061	30.889	31.64	0					41	18	4	0	0	0	0.2451	2	11236	11236;11415		110.12	27.815	1	17429000			10741	4531	6774	6807	10906;10907	10906					0.04777221962888234
FDGRVVAK	8	Unmodified	_FDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.2557067871094	2	446.255977	890.497401	-0.15589	-6.9566E-05	-0.34275	-0.00015296	-0.49864	-0.00022252	446.2558058776564	31.004	0.5049	31.004	30.909	31.414	0					37	11	4	0	0	0	0.25143	1	11638	11638		98.629	27.334	1	4471400			10742	4531	6774	6807	10908	10908					0.04777221962888234
FDGRVVAK	8	Unmodified	_FDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.25567626953125	2	446.255977	890.497401	-0.44153	-0.00019703	-0.18507	-8.2587E-05	-0.62659	-0.00027962	446.2558831275707	30.808	0.19075	30.808	30.724	30.915	0					11	5	3	0	0	0	0.3049	1	10539	10539		82.241	30.905	1	136950			10743	4531	6774	6807	10909	10909					0.04777221962888234
FDGRVVAK	8	Unmodified	_FDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2557373046875	2	446.255977	890.497401	0.82007	0.00036596	-0.89822	-0.00040083	-0.078147	-3.4874E-05	446.25535307529907	30.973	0.41021	30.973	30.865	31.275	0					19	8	3	0	0	0	0.32597	1	11537	11537		79.713	5.7379	1	1441900			10744	4531	6774	6807	10910	10910					0.04777221962888234
FDGSVTFHHP	10	Unmodified	_FDGSVTFHHP_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.2664794921875	2	572.26453	1142.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.731	1	43.731	43.231	44.231	0								0	0	0	0.4201	1	17511	17511		21.96	1.013	1				10745	4447	6775	6808	10911	10911					-0.051049022219331164
FDHFVRNQH	9	Unmodified	_FDHFVRNQH_					0	0	0			REV__DDX6|p.R373Q|1|0.15|ENSG00000110367|chr11:118756316-118756316|C/T|missense_variant	REV__DDX6|p.R373Q|1|0.15|ENSG00000110367|chr11:118756316-118756316|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2904663085938	2	600.288871	1198.56319	2.1031	0.0012625	0.089968	5.4007E-05	2.1931	0.0013165	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.53083	1	18529	18529		29.15	0	1	67330000	+		10746	12690	6776	6809	10912	10912					-0.02814988862201062
FDIEDYIFT	9	Unmodified	_FDIEDYIFT_					0	0	0		EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.7677612304688	2	581.76878	1161.52301	-0.33953	-0.00019753	-1.0373	-0.00060346	-1.3768	-0.00080098	581.768306637947	29.974	0.15773	29.974	29.884	30.042	0					5	3	2	0	0	0	0.37197	1	11173	11173		44.117	9.9443	1	65482			10747	879	6777	6810	10913	10913					-0.05129393096035528
FDIIRYKGG	9	Unmodified	_FDIIRYKGG_					0	0	0			REV__tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	REV__tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7954711914062	2	534.795466	1067.57638	0.55177	0.00029508	-0.36016	-0.00019261	0.19161	0.00010247	534.7948447169777	38.912	0.14421	38.912	38.851	38.995	0					12	8	2	0	0	0	0.39215	1	12672	12672		42.396	1.618	1	59470	+		10748	21932	6778	6811	10914	10914					0.045294491971844764
FDIIYVLN	8	Unmodified	_FDIIYVLN_					0	0	0			REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF	REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.7745361328125	2	498.773668	995.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.03	1	16.03	15.53	16.53	0								0	0	0	1.7419	1	4262	4262		45.952	8.7928	1		+		10749	12640	6779	6812	10915	10915					0.03483839700027147
FDISFIPQL	9	Unmodified	_FDISFIPQL_					0	0	0		ABCA9|p.G872D|1|0.31|ENSG00000154258|chr17:69018565-69018565|C/T|missense_variant	ABCA9|p.G872D|1|0.31|ENSG00000154258|chr17:69018565-69018565|C/T|missense_variant	ABCA9|p.G872D|1|0.31|ENSG00000154258|chr17:69018565-69018565|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.79296875	2	540.292225	1078.5699	0.27371	0.00014788	4.1021	0.0022163	4.3758	0.0023642	540.2959090827271	36.858	0.38902	36.858	36.586	36.975	0					27	10	4	0	0	0	0.24095	1	13892	13892		56.721	1.9447	1	317870			10750	11	6780	6813	10916	10916					0.03375511245803864
FDITLYIST	9	Unmodified	_FDITLYIST_					0	0	0			REV__tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	REV__tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7816162109375	2	536.78169	1071.54883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.134	1	47.134	46.634	47.634	0								0	0	0	0.24724	1	18833	18833		44.117	5.0953	1		+		10751	21826	6781	6814	10917	10917					0.015915011462766415
FDKLNLQNI	9	Unmodified	_FDKLNLQNI_					0	0	0		nc|ENSG00000176915|Q86XL3-3|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2	nc|ENSG00000176915|Q86XL3-3|ANKLE2	nc|ENSG00000176915|Q86XL3-3|ANKLE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.874267578125	3	368.873113	1103.59751	-1.0085	-0.00037203	3.8181	0.0014084	2.8095	0.0010364	368.87468208809395	28.507	0.11793	28.507	28.463	28.581	0					7	4	2	0	0	0	0.25716	1	9205	9205		54.776	5.3348	1	64881			10752	6633	6782	6815	10918	10918					0.0498541450601806
FDKPVSPL	8	Unmodified	_FDKPVSPL_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENSG00000131730|ENST00000254035|CKMT2;ENSG00000104879|ENST00000221476|CKM;ENSG00000223572|ENST00000413453|CKMT1A;ENSG00000237289|ENST00000441322|CKMT1B;nc|ENSG00000237289|P12532-2|CKMT1A	ENSG00000166165|ENST00000348956|CKB;ENSG00000223572|ENST00000413453|CKMT1A	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7525634765625	2	451.752736	901.490919	0.71413	0.00032261	-0.96326	-0.00043516	-0.24914	-0.00011255	451.75250159485915	33.567	0.2577	33.567	33.433	33.69	0					19	6	4	0	0	0	0.46013	1	12871	12871		64.207	14.183	1	492510			10753	5864;7859	6783	6816	10919	10919					0.03623284011530359
FDLDMQGRR	9	Unmodified	_FDLDMQGRR_					0	0	0			REV__nc|ENSG00000213213|Q5T5S1-3|CCDC183	REV__nc|ENSG00000213213|Q5T5S1-3|CCDC183	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.27587890625	2	569.277115	1136.53968	0.080746	4.5967E-05	-3.2648	-0.0018586	-3.1841	-0.0018126	569.2755651477938	26.531	0.49076	26.531	26.395	26.886	0					34	11	5	0	0	0	0.12834	1	9150	9150		56.721	0	1	3191800	+		10754	17558	6784	6817	10920	10920					-0.023131706910135108
FDLIPAVAPAR	11	Unmodified	_FDLIPAVAPAR_					0	0	0			REV__GRIN2D|p.L300Cfs*27|1|0.45|ENSG00000105464|chr19:48405161-48405161|C/-|frameshift_variant	REV__GRIN2D|p.L300Cfs*27|1|0.45|ENSG00000105464|chr19:48405161-48405161|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	390.56005859375	3	390.560758	1168.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.858	1	27.858	27.358	28.358	0								0	0	0	0.45674	1	9168	9168		24.232	0.70912	1		+		10755	13777	6785	6818	10921	10921					0.08285980294067485
FDLKEPLKY	9	Unmodified	_FDLKEPLKY_					0	0	0			REV__nc|ENSG00000116791|Q08257-3|CRYZ	REV__nc|ENSG00000116791|Q08257-3|CRYZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.8173828125	2	576.818607	1151.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.761	1	26.761	26.261	27.261	0								0	0	0	0.29774	1	8663	8663		35.618	2.8059	1		+		10756	14167	6786	6819	10922	10922					0.05291469308599517
FDLLCQPKY	9	Unmodified	_FDLLCQPKY_					0	0	0			REV__PLEKHM2|p.Y174C|1|0.21|ENSG00000116786|chr1:15719789-15719789|A/G|missense_variant	REV__PLEKHM2|p.Y174C|1|0.21|ENSG00000116786|chr1:15719789-15719789|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7830200195312	2	563.78371	1125.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.354	1	39.354	38.854	39.854	0								0	0	0	0.2591	1	14980	14980		42.396	10.441	1		+		10757	21390	6787	6820	10923	10923					-0.004887326316520557
FDLLTKFQ	8	Unmodified	_FDLLTKFQ_					0	0	0		nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1	nc|ENSG00000160360|Q86YR5-4|GPSM1	nc|ENSG00000160360|Q86YR5-4|GPSM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7828369140625	2	506.279118	1010.54368	1.2566	0.0006362	1.5481	0.00078379	2.8048	0.00142	506.280027318258	46.559	0.14878	46.559	46.496	46.645	0					10	7	2	0	0	0	0.67394	1	18624	18624		37.159	3.6435	1	89853			10758	5360	6788	6821	10924	10924					0.03883242074334703
FDLRKQSY	8	Unmodified	_FDLRKQSY_					0	0	0			REV__ENST00000305031.4_1_5:129521119-129521206:+|nuORF	REV__ENST00000305031.4_1_5:129521119-129521206:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7772216796875	2	528.777274	1055.53999	0.15079	7.9733E-05	0.40717	0.0002153	0.55796	0.00029503	528.7772311910697	33.268	0.27733	33.268	33.162	33.44	0					21	11	2	0	0	0	0.5535	1	11145	11145		53.351	5.6941	1	122980	+		10759	18233	6789	6822	10925	10925					0.01444572300465552
FDLVSHVTI	9	Unmodified	_FDLVSHVTI_					0	0	0			REV__COL20A1|p.P560Rfs*9|2|0.11|ENSG00000101203|chr20:63311925-63311925|C/-|frameshift_variant	REV__COL20A1|p.P560Rfs*9|2|0.11|ENSG00000101203|chr20:63311925-63311925|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7818603515625	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.305	1	36.305	35.805	36.805	0								0	0	0	0.24724	1	14128	14128		44.117	1.6423	1		+		10760	12550	6790	6823	10926	10926					0.035903405860153725
FDMKTVWQ	8	Unmodified	_FDMKTVWQ_					0	0	0		nc|nan|Q8NEG2-2|C7orf57;ENSG00000164746|ENST00000348904|C7orf57	nc|nan|Q8NEG2-2|C7orf57	nc|nan|Q8NEG2-2|C7orf57	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.757568359375	2	527.754953	1053.49535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.924	1	37.924	37.424	38.424	0								0	0	0	1.7419	1	13572	13572		53.351	2.1588	1				10761	5725	6791	6824	10927	10927					-0.029255748372406742
FDNEKPNQI	9	Unmodified	_FDNEKPNQI_					0	0	0			REV__ENSG00000167117|ENST00000450727|ANKRD40CL	REV__ENSG00000167117|ENST00000450727|ANKRD40CL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7958374023438	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.396	1	42.396	41.896	42.896	0								0	0	0	0.20989	1	16640	16640		42.396	0	1		+		10762	16170	6792	6825	10928	10928					-0.022883392873836783
FDNKDESMVH	10	Unmodified	_FDNKDESMVH_					0	0	0			REV__ENSG00000056586|ENST00000357244|RC3H2	REV__ENSG00000056586|ENST00000357244|RC3H2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	611.2647094726562	2	611.26387	1220.51319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.632	1	38.632	38.132	39.132	0								0	0	0	0.40063	1	13813	13813		30.318	1.1477	1		+		10763	13062	6793	6826	10929	10929					-0.08824904373022946
FDNLQRVK	8	Unmodified	_FDNLQRVK_					0	0	0		MYH3|p.I1208F|1|0.39|ENSG00000109063|chr17:10638150-10638150|T/A|missense_variant	MYH3|p.I1208F|1|0.39|ENSG00000109063|chr17:10638150-10638150|T/A|missense_variant	MYH3|p.I1208F|1|0.39|ENSG00000109063|chr17:10638150-10638150|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.28570556640625	2	510.285266	1018.55598	-0.11537	-5.8869E-05	-0.1925	-9.8228E-05	-0.30786	-0.0001571	510.28520510486953	30.658	0.23986	30.658	30.563	30.803	0					20	10	3	0	0	0	0.41	1	9775	9775		79.451	10.966	1	190540			10764	11394	6794	6827	10930	10930					0.04744278537373248
FDPLSLKLN	9	Unmodified	_FDPLSLKLN_					0	0	0			REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7973022460938	2	523.797675	1045.5808	0.74305	0.00038921	-0.6964	-0.00036477	0.046651	2.4436E-05	523.7971869891406	37.853	0.20038	37.853	37.766	37.966	0					27	11	3	0	0	0	0.39215	1	12359	12359		42.396	3.1433	1	406950	+		10765	12186	6795	6828	10931	10931					0.059829136200733046
FDPPQEDGVL	10	Unmodified	_FDPPQEDGVL_					0	0	0		ENST00000484202.2_1_1:249104790-249105009:-|nuORF	ENST00000484202.2_1_1:249104790-249105009:-|nuORF	ENST00000484202.2_1_1:249104790-249105009:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.764892578125	2	558.764029	1115.5135	-0.82062	-0.00045853	2.5704	0.0014362	1.7497	0.00097769	558.7651717120084	18.827	0.13695	18.827	18.747	18.884	0					5	3	2	0	0	0	0.59277	1	5008	5008		35.152	0	1	53366			10766	9990	6796	6829	10932	10932					-0.03963161381534519
FDPVPNLQLL	10	Unmodified	_FDPVPNLQLL_					0	0	0		nc|ENSG00000165300|O94991-2|SLITRK5;SLITRK5|p.Y855Tfs*5|1|0.21|ENSG00000165300|chr13:87677948-87677948|T/-|frameshift_variant;SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant;SLITRK5|p.A906Qfs*20|1|0.09|ENSG00000165300|chr13:87678100-87678100|G/-|frameshift_variant;ENSG00000165300|ENST00000683689|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.3240966796875	2	578.324057	1154.63356	1.6846	0.00097427	3.0655	0.0017729	4.7502	0.0027471	578.3254929376968	37.676	0.19331	37.676	37.591	37.785	0					8	6	2	0	0	0	0.28675	1	14779	14779		66.429	7.6473	1	73776			10767	5784	6797	6830	10933	10933					0.06242871682911755
FDRDFQIR	8	Unmodified	_FDRDFQIR_					0	0	0		MYO1D|p.R504Q|1|0.17|ENSG00000176658|chr17:32748963-32748963|C/T|missense_variant	MYO1D|p.R504Q|1|0.17|ENSG00000176658|chr17:32748963-32748963|C/T|missense_variant	MYO1D|p.R504Q|1|0.17|ENSG00000176658|chr17:32748963-32748963|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7827758789062	2	548.780348	1095.54614	3.7966	0.0020835	1.2224	0.00067081	5.019	0.0027543	548.7806601874224	43.32	0.46931	43.32	43.051	43.521	0					53	16	4	0	0	0	0.64144	1	17319	17319		42.396	3.59	1	279430			10768	11396	6798	6831	10934	10934					0.002190905319821468
FDRGCLVI	8	Unmodified	_FDRGCLVI_					0	0	0			REV__ENST00000381714.7_1_15:77713264-77740077:+|nuORF	REV__ENST00000381714.7_1_15:77713264-77740077:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.7444763183594	2	461.744388	921.474223	-0.71631	-0.00033075	-1.479	-0.00068294	-2.1954	-0.0010137	461.74375605416475	35.794	0.16483	35.794	35.7	35.865	0					6	4	2	0	0	0	0.73426	1	13474	13474		29.15	6.1071	1	38131	+		10769	18787	6799	6832	10935	10935					0.010344598539063554
FDSFLEGFK	9	Unmodified	_FDSFLEGFK_					0	0	0			REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7695922851562	2	545.266207	1088.51786	0.39479	0.00021527	3.4344	0.0018726	3.8292	0.0020879	545.7694661106699	39.502	0.31138	39.502	39.391	39.702	0					20	12	2	0	0	0	0.2873	1	15031	15031		51.335	1.7994	1	105230	+		10770	16991	6800	6833	10936	10936					-0.022856521679386788
FDSLRRLY	8	Unmodified	_FDSLRRLY_					0	0	0		RECQL5|p.F29Lfs*13|1|0.28|ENSG00000108469|chr17:75666471-75666471|A/-|frameshift_variant	RECQL5|p.F29Lfs*13|1|0.28|ENSG00000108469|chr17:75666471-75666471|A/-|frameshift_variant	RECQL5|p.F29Lfs*13|1|0.28|ENSG00000108469|chr17:75666471-75666471|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2935180664062	2	535.293091	1068.57163	0.2913	0.00015593	0.12229	6.5463E-05	0.4136	0.0002214	535.2931585841114	28.654	1.2513	28.654	28.499	29.75	0					52	26	4	0	0	0	0.65148	1	10654	10654		30.504	3.8107	1	4061100			10771	12015	6801	6834	10937	10937					0.04008565054414248
FDSTYVRG	8	Unmodified	_FDSTYVRG_					0	0	0			REV__ENSG00000087095|ENST00000407008|NLK	REV__ENSG00000087095|ENST00000407008|NLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7265930175781	2	472.727249	943.439946	0.22578	0.00010673	-0.56449	-0.00026685	-0.33871	-0.00016012	472.7269817284157	31.537	0.90057	31.537	31.452	32.353	0					39	22	2	0	0	0	0.69548	1	11506	11506		34.173	2.2177	1	121100	+		10772	13379	6802	6835	10938	10938					-0.03403665033317793
FDTCEAERK	9	Unmodified	_FDTCEAERK_					0	0	0		nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant	nc|ENSG00000100629|Q6ZU80-1|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7503662109375	2	549.747856	1097.48116	3.7629	0.0020687	0.55021	0.00030247	4.3131	0.0023711	549.7482673363022	35.956	0.36562	35.956	35.801	36.166	0					25	7	5	0	0	0	0.032052	1	13915	13915		107.01	41.204	1	2626400			10773	2051	6803	6836	10939	10939					-0.06368272056170099
FDTIAMSL	8	Unmodified	_FDTIAMSL_					0	0	0			REV__TAAR2|p.F122Lfs*3|1|0.22|ENSG00000146378|chr6:132617840-132617840|A/-|frameshift_variant	REV__TAAR2|p.F122Lfs*3|1|0.22|ENSG00000146378|chr6:132617840-132617840|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.22442626953125	2	449.222954	896.431355	2.5473	0.0011443	0.54983	0.00024699	3.0972	0.0013913	449.2232150734746	21.313	0.26492	21.313	21.206	21.471	0					8	5	2	0	0	0	0.65276	1	6932	6932		40.573	40.573	1	1139000	+		10774	15310	6804	6837	10940	10940					-0.0210035499416108
FDTKRLGLV	9	Unmodified	_FDTKRLGLV_					0	0	0			REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8121337890625	2	524.811116	1047.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.441	1	38.441	37.941	38.941	0								0	0	0	0.24544	1	15082	15082		44.377	7.9304	1		+		10775	15756	6805	6838	10941	10941					0.08578022231267823
FDTLKEMVI	9	Unmodified	_FDTLKEMVI_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2952880859375	2	548.291368	1094.56818	3.8167	0.0020927	1.807	0.00099079	5.6238	0.0030835	548.2924897956551	33.981	0.50061	33.981	33.876	34.376	0					17	10	3	0	0	0	0.22377	1	12987	12987		58.782	0	1	1213100			10776	6411	6806	6839	10942	10942					0.02468134165542324
FDTLKEQL	8	Unmodified	_FDTLKEQL_					0	0	0			REV__USP25|p.L1009Cfs*58|1|0.32|ENSG00000155313|chr21:15878328-15878328|T/-|frameshift_variant	REV__USP25|p.L1009Cfs*58|1|0.32|ENSG00000155313|chr21:15878328-15878328|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2647399902344	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.562	1	37.562	37.062	38.062	0								0	0	0	1.7419	1	12696	12696		68.787	2.3575	1		+		10777	15594	6807	6840	10943	10943					0.02130347832053303
FDTQSKEKL	9	Unmodified	_FDTQSKEKL_					0	0	0		WDR45|p.R218H|1|0.38|ENSG00000196998|chrX:49075617-49075617|C/T|missense_variant;ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45	WDR45|p.R218H|1|0.38|ENSG00000196998|chrX:49075617-49075617|C/T|missense_variant	WDR45|p.R218H|1|0.38|ENSG00000196998|chrX:49075617-49075617|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2882080078125	2	548.287671	1094.56079	0.40473	0.00022191	0.99859	0.00054751	1.4033	0.00076942	548.2876935572029	29.175	0.2515	29.175	29.084	29.335	0					14	10	2	0	0	0	0.30951	1	9466	9466		49.442	0	1	150260			10778	7412	6808	6841	10944	10944					0.017291178894765835
FDTSHDLRQ	9	Unmodified	_FDTSHDLRQ_					0	0	0			REV__GBE1|p.S671Lfs*36|1|0.18|ENSG00000114480|chr3:81499151-81499151|A/-|frameshift_variant	REV__GBE1|p.S671Lfs*36|1|0.18|ENSG00000114480|chr3:81499151-81499151|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.7669067382812	2	559.764894	1117.51524	-0.079672	-4.4598E-05	4.3807	0.0024522	4.301	0.0024076	559.7679043335679	30.171	0.187	30.171	30.076	30.263	0					10	4	3	0	0	0	0.24095	1	11239	11239		56.721	1.9447	1	171340	+		10779	14071	6809	6842	10945	10945					-0.03882107572917448
FDTSKVGQIK	10	Unmodified	_FDTSKVGQIK_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.8106689453125	2	561.811313	1121.60807	3.4694	0.0019492	-3.8393	-0.0021569	-0.36983	-0.00020777	561.8081518740493	41.673	0.55289	41.673	41.428	41.981	0					23	15	2	0	0	0	0.52275	1	16599	16599		42.864	10.052	1	105090	+		10780	17610	6810	6843	10946	10946					0.05213397160468958
FDTVRRYL	8	Unmodified	_FDTVRRYL_					0	0	0		tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7815551757812	2	535.293091	1068.57163	0.2913	0.00015593	0.12229	6.5463E-05	0.4136	0.0002214	535.2931585841114	28.654	1.2513	28.654	28.499	29.75	0					52	26	4	0	0	0	0.71588	1	10988	10988		29.15	16.19	1	4061100			10781	23033	6811	6844	10947	10947					0.04008565054414248
FDVAQTKL	8	Unmodified	_FDVAQTKL_					0	0	0			REV__ENST00000507551.1_1_17:47679228-47679363:-|nuORF	REV__ENST00000507551.1_1_17:47679228-47679363:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2550964355469	2	461.255643	920.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.785	1	28.785	28.285	29.285	0								0	0	0	1.7419	1	9601	9601		30.504	2.4222	1		+		10782	14303	6812	6845	10948	10948					0.033303825231769224
FDVKSGSAVHK	11	Unmodified	_FDVKSGSAVHK_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.2120361328125	3	392.212017	1173.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.084	1	24.084	23.584	24.584	0								0	0	0	0.18216	1	8063	8063		65.278	28.96	1				10783	4427	6813	6846	10949	10949					0.03435915391992239
FDVKSGSAVHK	11	Unmodified	_FDVKSGSAVHK_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.2118835449219	3	392.212017	1173.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.881	1	23.881	23.381	24.381	0								0	0	0	0.41817	1	7361	7361		33.039	3.8693	1				10784	4427	6813	6846	10950	10950					0.03435915391992239
FDVKSGSAVHK	11	Unmodified	_FDVKSGSAVHK_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.2121887207031	3	392.212017	1173.61422	0.45939	0.00018018	-0.11242	-4.4093E-05	0.34697	0.00013609	392.21201275798114	23.972	0.16502	23.972	23.914	24.079	0					8	3	3	0	0	0	0.084685	1	8219	8219		93.442	54.189	1	451630			10785	4427	6813	6846	10951	10951					0.03435915391992239
FDVPVGSRGDC	11	Carbamidomethyl (C)	_FDVPVGSRGDC(Carbamidomethyl (C))_	FDVPVGSRGDC(1)		FDVPVGSRGDC(51)		0	1	0		nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	nc|ENSG00000158864|O75306-2|NDUFS2	nc|ENSG00000158864|O75306-2|NDUFS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.7696533203125	2	604.771862	1207.52917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.131	1	35.131	34.631	35.631	0								0	0	0	0.30675	1	12492	12492		51.193	8.3284	1				10786	5288	6814	6847	10952	10952	215				-0.06629198136101877
FDVTGPHAPI	10	Unmodified	_FDVTGPHAPI_					0	0	0		nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7724609375	2	527.271824	1052.5291	3.4713	0.0018303	-3.6312	-0.0019146	-0.15988	-8.4301E-05	527.2699610188605	43.198	0.18731	43.198	43.096	43.283	0					10	6	2	0	0	0	0.58896	1	17281	17281		35.618	2.1027	1	83317			10787	11760	6815	6848	10953	10953					0.004931699261760514
FDVWECSTI	9	Unmodified	_FDVWECSTI_					0	0	0			REV__ENSG00000197181|ENST00000356766|PIWIL2	REV__ENSG00000197181|ENST00000356766|PIWIL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2412719726562	2	550.241875	1098.4692	0.1956	0.00010763	-1.4854	-0.00081735	-1.2898	-0.00070973	550.2411303139322	21.398	0.16754	21.398	21.29	21.458	0					7	3	3	0	0	0	0.51817	1	7104	7104		30.504	0.18592	1	263710	+		10788	17318	6816	6849	10954	10954					-0.07609888799356668
FDWKAIQEGA	10	Unmodified	_FDWKAIQEGA_					0	0	0		ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-3|APC;nc|ENSG00000134982|P25054-2|APC	ENSG00000134982|ENST00000257430|APC	ENSG00000134982|ENST00000257430|APC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.7898559570312	2	582.787838	1163.56112	3.2289	0.0018818	-0.089546	-5.2186E-05	3.1394	0.0018296	582.7878121513199	44.653	1.8263	44.653	43.011	44.837	0					116	67	3	0	0	0	0.67098	1	17604	17604		25.574	0	1	339610			10789	3953	6817	6850	10955	10955					-0.014114623906607449
FDYNSQQQL	9	Unmodified	_FDYNSQQQL_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2	nc|ENSG00000134644|Q14671-2|PUM1;ENSG00000055917|ENST00000361078|PUM2	ENSG00000055917|ENST00000361078|PUM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.7606811523438	2	571.759278	1141.504	-0.053878	-3.0805E-05	1.6811	0.00096116	1.6272	0.00093036	571.7601649588721	37.526	0.25357	37.526	37.415	37.669	0					12	7	3	0	0	0	0.095583	1	14225	14225		80.455	21.673	1	137260			10790	1283;3933	6818	6851	10956	10956					-0.06108929667038865
FDYNSQQQL	9	Unmodified	_FDYNSQQQL_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2	nc|ENSG00000134644|Q14671-2|PUM1;ENSG00000055917|ENST00000361078|PUM2	ENSG00000055917|ENST00000361078|PUM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.7603759765625	2	571.759278	1141.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.316	1	37.316	36.816	37.816	0								0	0	0	0.28666	1	12621	12621		37.812	2.1932	1				10791	1283;3933	6818	6851	10957	10957					-0.06108929667038865
FDYSRSDY	8	Unmodified	_FDYSRSDY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7217407226562	2	526.719621	1051.42469	2.0371	0.001073	2.5496	0.0013429	4.5866	0.0024159	526.7209832564557	31.255	0.21612	31.255	31.169	31.385	0					7	5	2	0	0	0	0.64144	1	11390	11390		42.396	6.7778	1	296290			10792	5566	6819	6852	10958	10958					-0.09896576621167696
FDYSSKENA	9	Unmodified	_FDYSSKENA_					0	0	0		tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7310180664062	2	530.732729	1059.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.053	1	31.053	30.553	31.553	0								0	0	0	0.24544	1	10256	10256		44.377	3.599	1				10793	22739	6820	6853	10959	10959					-0.07644307449709231
FEAKLAKE	8	Unmodified	_FEAKLAKE_					0	0	0			REV__RBMXL3|p.G265Afs*11|1|0.38|ENSG00000175718|chrX:115190234-115190234|G/-|frameshift_variant	REV__RBMXL3|p.G265Afs*11|1|0.38|ENSG00000175718|chrX:115190234-115190234|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2633056640625	2	468.263468	934.512382	0.58387	0.0002734	-0.90534	-0.00042394	-0.32147	-0.00015053	468.2629258823502	45.349	0.3132	45.349	45.263	45.576	0					15	12	2	0	0	0	0.69548	1	18142	18142		34.173	1.3601	1	245800	+		10794	16627	6821	6854	10960	10960					0.042506690402206004
FEAKVQAL	8	Unmodified	_FEAKVQAL_					0	0	0		nc|ENSG00000115468|Q9BUP0-2|EFHD1;ENSG00000115468|ENST00000264059|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.25872802734375	2	453.258185	904.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.301	1	32.301	31.801	32.801	0								0	0	0	1.7419	1	11846	11846		84.916	0	1				10795	2912	6822	6855	10961	10961					0.04574686385797122
FEAPDQKTL	9	Unmodified	_FEAPDQKTL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7692260742188	2	524.769114	1047.52368	0.7014	0.00036807	2.0353	0.0010681	2.7367	0.0014361	524.7701215417865	30.649	0.29893	30.649	30.528	30.827	0					19	12	2	0	0	0	0.19952	1	9776	9776		61.691	6.915	1	118960			10796	3044	6823	6856	10962	10962					0.001814463437312952
FEAPDQKTL	9	Unmodified	_FEAPDQKTL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.769775390625	2	524.769114	1047.52368	0.093915	4.9284E-05	2.1185	0.0011117	2.2124	0.001161	524.7702599013597	30.912	0.3531	30.912	30.771	31.124	0					12	8	2	0	0	0	0.032181	1	11185	11185		106.88	29.563	1	442840			10797	3044	6823	6856	10963	10963					0.001814463437312952
FEAPDQKTL	9	Unmodified	_FEAPDQKTL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7710571289062	2	524.769114	1047.52368	1.7791	0.0009336	1.3493	0.00070809	3.1284	0.0016417	524.7699526197874	30.99	0.63381	30.99	30.633	31.267	0					43	14	5	0	0	0	0.067603	1	11590	11590		89.029	23.563	1	3863600			10798	3044	6823	6856	10964	10964					0.001814463437312952
FEAPNQEKV	9	Unmodified	_FEAPNQEKV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.267822265625	2	531.266739	1060.51892	-1.2361	-0.00065672	4.0453	0.0021491	2.8091	0.0014924	531.2691224791913	26.881	0.18265	26.881	26.721	26.903	0					7	4	2	0	0	0	0.3269	1	8702	8702		47.96	13.787	1	62503			10799	3804	6824	6857	10965	10965					-0.008914377990549838
FEAQGKPEL	9	Unmodified	_FEAQGKPEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7643737792969	2	509.763832	1017.51311	1.0238	0.00052192	-1.1334	-0.00057776	-0.10956	-5.5848E-05	509.76351558506195	28.756	0.23733	28.756	28.686	28.923	0					16	8	3	0	0	0	0.14673	1	9001	9001		61.691	2.9093	1	198210			10800	1777	6825	6858	10966	10966					0.0050546368928507945
FEAQGKPEL	9	Unmodified	_FEAQGKPEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7640380859375	2	509.763832	1017.51311	0.94926	0.0004839	-1.5331	-0.00078154	-0.58387	-0.00029764	509.7633627333108	29.047	0.61167	29.047	28.929	29.541	0					36	15	4	0	0	0	0.11635	1	10312	10312		59.931	19.153	1	1101900			10801	1777	6825	6858	10967	10967					0.0050546368928507945
FEAQGKPEL	9	Unmodified	_FEAQGKPEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.76409912109375	2	509.763832	1017.51311	1.1809	0.000602	-1.2958	-0.00066054	-0.11484	-5.8541E-05	509.76345264675524	29.02	0.42358	29.02	28.911	29.334	0					20	9	3	0	0	0	0.024086	1	10707	10707		99.013	34.806	1	1023700			10802	1777	6825	6858	10968	10968					0.0050546368928507945
FEAQGKPEL	9	Unmodified	_FEAQGKPEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7641906738281	2	509.763832	1017.51311	-1.8368	-0.00093634	2.254	0.001149	0.41719	0.00021267	509.7648164678296	28.832	0.18531	28.832	28.737	28.923	0					8	4	2	0	0	0	0.23738	1	9634	9634		50.034	18.079	1	84773			10803	1777	6825	6858	10969	10969					0.0050546368928507945
FEAQGKPEL	9	Unmodified	_FEAQGKPEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.76397705078125	2	509.763832	1017.51311	-0.027126	-1.3828E-05	-0.0051839	-2.6426E-06	-0.03231	-1.647E-05	509.7639104157333	28.967	0.36365	28.967	28.86	29.224	0					21	7	4	0	0	0	0.026656	1	10569	10569		96.034	27.247	1	554580			10804	1777	6825	6858	10970	10970					0.0050546368928507945
FEAQGKPEL	9	Unmodified	_FEAQGKPEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.76385498046875	2	509.763832	1017.51311	1.3568	0.00069164	-2.1404	-0.0010911	-0.78366	-0.00039948	509.76299793592943	28.983	0.61268	28.983	28.843	29.456	0					27	12	3	0	0	0	0.086763	1	10560	10560		75.652	24.317	1	1226800			10805	1777	6825	6858	10971	10971					0.0050546368928507945
FEARLLAGP	9	Unmodified	_FEARLLAGP_					0	0	0			REV__nc|ENSG00000112787|Q9HCM7|FBRSL1	REV__nc|ENSG00000112787|Q9HCM7|FBRSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	325.18707275390625	3	325.187032	972.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.358	1	14.358	13.858	14.858	0								0	0	0	0.38404	1	3028	3028		15.642	2.8301	1		+		10806	20979	6826	6859	10972	10972					0.0518977765142381
FEATLEAGDG	10	Unmodified	_FEATLEAGDG_					0	0	0			REV__ENSG00000247596|ENST00000305533|TWF2	REV__ENSG00000247596|ENST00000305533|TWF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.771484375	2	505.227279	1008.44001	0.10605	5.3582E-05	-3.5558	-0.0017965	-3.4497	-0.0017429	505.2257830767078	19.471	0.32052	19.471	19.369	19.689	0					18	7	3	0	0	0	0.65213	1	5265	5265		27.882	3.6795	1	1571100	+		10807	17714	6827	6860	10973	10973					-0.06387709823991372
FECCMLKK	8	Unmodified	_FECCMLKK_					0	0	0			REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2336120605469	2	501.234484	1000.45442	-0.11799	-5.914E-05	0.49696	0.00024909	0.37897	0.00018995	501.2350172155669	12.381	0.3386	12.381	12.265	12.603	0					19	11	2	0	0	0	0.72381	1	2600	2600		30.504	1.3541	1	231660	+		10808	16942	6828	6861	10974	10974					-0.04579375472701486
FEDAKEAL	8	Unmodified	_FEDAKEAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.72906494140625	2	461.729458	921.444362	0.096151	4.4396E-05	3.0949	0.001429	3.1911	0.0014734	461.72938533432813	29.197	0.17139	29.197	29.101	29.273	0					9	4	3	0	0	0	0.50061	1	10388	10388		60.118	8.7828	1	74151			10809	2879	6829	6862	10975	10975					-0.019502006104403335
FEDAKEAL	8	Unmodified	_FEDAKEAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7294006347656	2	461.729458	921.444362	-0.14873	-6.8673E-05	1.6836	0.00077735	1.5348	0.00070868	461.7293696591319	29.174	0.14951	29.174	29.116	29.266	0					8	3	3	0	0	0	0.50061	1	10782	10782		60.118	14.166	1	281860			10810	2879	6829	6862	10976	10976					-0.019502006104403335
FEDFARFI	8	Unmodified	_FEDFARFI_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7599487304688	2	522.761092	1043.50763	0.44767	0.00023402	-0.83351	-0.00043573	-0.38585	-0.00020171	522.760324731245	29.944	0.19957	29.944	29.853	30.053	0					15	7	3	0	0	0	0.63077	1	9793	9793		44.117	1.7207	1	79770			10811	4115	6830	6863	10977	10977					-0.01238215102534923
FEEASNQL	8	Unmodified	_FEEASNQL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2169494628906	2	469.216714	936.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.377	1	32.377	31.877	32.877	0								0	0	0	1.7419	1	10464	10464		68.787	0	1				10812	1615	6831	6864	10978	10978					-0.051876751328450155
FEEASNQL	8	Unmodified	_FEEASNQL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.216064453125	2	469.216714	936.418876	-0.12642	-5.9319E-05	0.10091	4.7349E-05	-0.025512	-1.197E-05	469.216702686705	32.67	0.25039	32.67	32.567	32.817	0					14	6	3	0	0	0	0.2451	1	12422	12422		110.12	110.12	1	233230			10813	1615	6831	6864	10979	10979					-0.051876751328450155
FEECLIAV	8	Unmodified	_FEECLIAV_					0	0	0			REV__nc|ENSG00000104635|Q15043-2|SLC39A14	REV__nc|ENSG00000104635|Q15043-2|SLC39A14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.23162841796875	2	462.230779	922.447005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.368	1	24.368	23.868	24.868	0								0	0	0	1.7419	1	7450	7450		44.531	2.0566	1		+		10814	13733	6832	6865	10980	10980					-0.01732068477122084
FEEINNEKL	9	Unmodified	_FEEINNEKL_					0	0	0			REV__tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1	REV__tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.1929016113281	3	379.192511	1134.5557	0.54381	0.00020621	0.44305	0.000168	0.98686	0.00037421	379.1926814527601	22.853	0.31757	22.853	22.744	23.061	0					17	6	4	0	0	0	0.25761	1	7805	7805		54.722	9.7001	1	2465600	+		10815	21772	6833	6866	10981	10981					-0.006191859731416116
FEEKRLVFL	9	Unmodified	_FEEKRLVFL_					0	0	0		PACSIN1|p.A334Rfs*2|1|0.39|ENSG00000124507|chr6:34530547-34530547|G/-|frameshift_variant;ENSG00000124507|ENST00000244458|PACSIN1	PACSIN1|p.A334Rfs*2|1|0.39|ENSG00000124507|chr6:34530547-34530547|G/-|frameshift_variant	PACSIN1|p.A334Rfs*2|1|0.39|ENSG00000124507|chr6:34530547-34530547|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.2287902832031	3	394.229008	1179.66519	0.42654	0.00016815	-0.56891	-0.00022428	-0.14237	-5.6126E-05	394.22872849209244	30.239	0.80063	30.239	30.031	30.831	0					28	16	4	0	0	0	0.22837	1	11184	11184		58.23	5.2932	1	1243100			10816	3380	6834	6867	10982	10982					0.08254864436867138
FEELQDKN	8	Unmodified	_FEELQDKN_					0	0	0			REV__ENST00000550152.5_1_12:56547702-56549709:+|nuORF	REV__ENST00000550152.5_1_12:56547702-56549709:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7406616210938	2	511.743096	1021.47164	1.0294	0.00052679	-1.2638	-0.00064672	-0.23435	-0.00011993	511.74243890954693	37.036	0.9547	37.036	36.38	37.335	0					52	26	3	0	0	0	0.78142	1	13881	13881		23.042	1.0826	1	642760	+		10817	17257	6835	6868	10983	10983					-0.03823717070042676
FEELRIWQ	8	Unmodified	_FEELRIWQ_					0	0	0			REV__ENST00000584641.5_1_17:65197178-65214920:-|nuORF	REV__ENST00000584641.5_1_17:65197178-65214920:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7931518554688	2	560.792924	1119.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.087	1	18.087	17.587	18.587	0								0	0	0	1.7419	1	4650	4650		20.947	0.95016	1		+		10818	20469	6836	6869	10984	10984					0.01629145334572968
FEFKAHVEG	9	Unmodified	_FEFKAHVEG_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant;SMCHD1|p.K680Nfs*3|2|0.26|ENSG00000101596|chr18:2706442-2706442|A/-|frameshift_variant	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2639770507812	2	532.263999	1062.51345	1.7158	0.00091326	-0.7582	-0.00040356	0.9576	0.0005097	532.2633741356839	36.57	1.0799	36.57	36.455	37.535	0					82	32	5	0	0	0	0.39215	1	14579	14579		42.396	1.618	1	12460000			10819	2131	6837	6870	10985	10985					-0.015311165908542534
FEFPSDFH	8	Unmodified	_FEFPSDFH_					0	0	0			REV__ENST00000485817.1_1_3:125063303-125063474:-|nuORF	REV__ENST00000485817.1_1_3:125063303-125063474:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2227172851562	2	513.2218	1024.42905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.745	1	21.745	21.245	22.245	0								0	0	0	1.7419	1	7256	7256		42.474	0	1		+		10820	13805	6838	6871	10986	10986					-0.082190674076287
FEFSGAFLL	9	Unmodified	_FEFSGAFLL_					0	0	0		MTMR6|p.E419G|1|0.07|ENSG00000139505|chr13:25253854-25253854|T/C|missense_variant	MTMR6|p.E419G|1|0.07|ENSG00000139505|chr13:25253854-25253854|T/C|missense_variant	MTMR6|p.E419G|1|0.07|ENSG00000139505|chr13:25253854-25253854|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7646484375	2	515.765843	1029.51713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.245	1	24.245	23.745	24.745	0								0	0	0	0.27025	1	7129	7129		33.516	3.0119	1				10821	11386	6839	6872	10987	10987					0.0035555318299884675
FEGDIQQFL	9	Unmodified	_FEGDIQQFL_					0	0	0		COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant;COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant	COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.768798828125	2	548.769114	1095.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.332	1	41.332	40.832	41.832	0								0	0	0	0.21054	1	15710	15710		49.442	1.7842	1				10822	592	6840	6873	10988	10988					-0.02026553656287433
FEGEPGNKV	9	Unmodified	_FEGEPGNKV_					0	0	0		nc|ENSG00000126432|P30044-3|PRDX5;ENSG00000126432|ENST00000265462|PRDX5;nc|ENSG00000126432|P30044-2|PRDX5	nc|ENSG00000126432|P30044-3|PRDX5	nc|ENSG00000126432|P30044-3|PRDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7400817871094	2	488.740357	975.46616	-0.40758	-0.0001992	-0.11945	-5.8382E-05	-0.52704	-0.00025758	488.7402876670753	28.599	0.29472	28.599	28.474	28.769	0					21	7	4	0	0	0	0.42902	1	10128	10128		39.253	2.0937	1	1175800			10823	3473	6841	6874	10989	10989					-0.022553958618573233
FEGKDMAAV	9	Unmodified	_FEGKDMAAV_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7332458496094	2	484.23131	966.448068	-0.095295	-4.6145E-05	0.014632	7.0855E-06	-0.080663	-3.9059E-05	484.2309309714123	29.554	0.15946	29.554	29.473	29.633	0					6	3	2	0	0	0	0.38666	1	10957	10957		42.864	3.6114	1	190850			10824	4896	6842	6875	10990	10990					-0.03649854108221007
FEGKDMAAV	9	Unmodified	_FEGKDMAAV_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.23095703125	2	484.23131	966.448068	-0.26284	-0.00012727	-0.69788	-0.00033793	-0.96072	-0.00046521	484.2310298926252	29.342	0.13461	29.342	29.255	29.39	0					6	3	2	0	0	0	0.44593	1	9853	9853		37.812	0.65241	1	116350			10825	4896	6842	6875	10991	10991					-0.03649854108221007
FEGKDMAAV	9	Unmodified	_FEGKDMAAV_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.23162841796875	2	484.23131	966.448068	-0.58427	-0.00028292	0.38457	0.00018622	-0.19971	-9.6703E-05	484.23150597475416	29.493	0.30674	29.493	29.358	29.664	0					12	6	3	0	0	0	0.28504	1	10809	10809		51.528	5.5758	1	387130			10826	4896	6842	6875	10992	10992					-0.03649854108221007
FEGKTLVSV	9	Unmodified	_FEGKTLVSV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2762756347656	2	490.276575	978.538597	-0.069139	-3.3897E-05	-0.1657	-8.1238E-05	-0.23484	-0.00011514	490.2764396013874	35.4	0.33395	35.4	35.29	35.624	0					20	9	3	0	0	0	0.076532	1	13706	13706		85.862	3.5568	1	693060			10827	1647	6843	6876	10993	10993					0.04846938211710494
FEGKTLVSV	9	Unmodified	_FEGKTLVSV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2769470214844	2	490.276575	978.538597	0.60568	0.00029695	-0.36356	-0.00017824	0.24212	0.00011871	490.2764303908436	35.174	0.2047	35.174	35.092	35.297	0					11	6	2	0	0	0	0.3269	1	12519	12519		47.96	3.8427	1	244040			10828	1647	6843	6876	10994	10994					0.04846938211710494
FEGKTLVSV	9	Unmodified	_FEGKTLVSV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2763977050781	2	490.276575	978.538597	-0.54117	-0.00026532	-0.36409	-0.0001785	-0.90526	-0.00044383	490.2762610549466	35.339	0.32263	35.339	35.229	35.552	0					19	6	4	0	0	0	0.076532	1	13619	13619		85.862	14.566	1	1829300			10829	1647	6843	6876	10995	10995					0.04846938211710494
FEGKTLVSV	9	Unmodified	_FEGKTLVSV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.27606201171875	2	490.276575	978.538597	0.77238	0.00037868	-2.5709	-0.0012604	-1.7985	-0.00088175	490.2751908472673	35.322	0.37288	35.322	35.213	35.586	0					19	7	4	0	0	0	0.12278	1	13636	13636		74.165	13.193	1	2837400			10830	1647	6843	6876	10996	10996					0.04846938211710494
FEGTTIDAY	9	Unmodified	_FEGTTIDAY_					0	0	0			REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7304382324219	2	508.732197	1015.44984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.171	1	32.171	31.671	32.671	0								0	0	0	0.1836	1	12202	12202		53.351	7.3792	1		+		10831	21902	6844	6877	10997	10997					-0.05726521818621677
FEGTVEIKR	9	Unmodified	_FEGTVEIKR_					0	0	0		BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.F1192C|1|0.39|ENSG00000139618|chr13:32337930-32337930|T/G|missense_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7987670898438	2	539.798206	1077.58186	0.26246	0.00014168	0.43264	0.00023354	0.69511	0.00037522	539.7983734207863	42.642	0.45703	42.642	42.515	42.972	0					64	23	4	0	0	0	0.60749	1	16236	16236		20.947	0.95016	1	3129000			10832	315;316	6845	6878	10998	10998					0.0461712798901317
FEGVSPKSL	9	Unmodified	_FEGVSPKSL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.260986328125	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.196	1	34.196	33.696	34.696	0								0	0	0	0.23445	1	12717	12717		45.972	5.1941	1				10833	8001	6846	6879	10999	10999					0.02454365177618456
FEHCNFNDVT	10	Carbamidomethyl (C)	_FEHC(Carbamidomethyl (C))NFNDVT_	FEHC(1)NFNDVT		FEHC(67)NFNDVT		0	1	0		ENSG00000085063|ENST00000642928|CD59;nc|ENSG00000284969|P13987-2|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	641.7620239257812	2	641.761494	1281.50844	0.21499	0.00013797	-0.10886	-6.9863E-05	0.10613	6.8112E-05	641.7616911092325	31.174	0.17061	31.174	31.086	31.257	0					14	6	3	0	0	0	0.3029	1	9997	9997		66.92	32.999	1	177720			10834	1721	6847	6880	11000	11000	72				-0.12105788515805216
FEHCNFNDVT	10	Carbamidomethyl (C)	_FEHC(Carbamidomethyl (C))NFNDVT_	FEHC(1)NFNDVT		FEHC(82)NFNDVT		0	1	0		ENSG00000085063|ENST00000642928|CD59;nc|ENSG00000284969|P13987-2|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	641.7615356445312	2	641.761494	1281.50844	0.64031	0.00041093	-0.76714	-0.00049232	-0.12683	-8.1395E-05	641.7611834100588	31.41	0.41645	31.41	31.319	31.735	0					22	10	4	0	0	0	0.18316	1	11437	11437		81.525	37.148	1	1036600			10835	1721	6847	6880	11001	11001	72				-0.12105788515805216
FEHCNFNDVT	10	Carbamidomethyl (C)	_FEHC(Carbamidomethyl (C))NFNDVT_	FEHC(1)NFNDVT		FEHC(58)NFNDVT		0	1	0		ENSG00000085063|ENST00000642928|CD59;nc|ENSG00000284969|P13987-2|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	641.761962890625	2	641.761494	1281.50844	-2.2904	-0.0014699	2.4408	0.0015664	0.15045	9.6556E-05	641.7633369843372	31.222	0.17436	31.222	31.128	31.303	0					12	5	3	0	0	0	0.38179	1	10716	10716		58.246	18.188	1	139930			10836	1721	6847	6880	11002	11002	72				-0.12105788515805216
FEHCNFNDVTT	11	Carbamidomethyl (C)	_FEHC(Carbamidomethyl (C))NFNDVTT_	FEHC(1)NFNDVTT		FEHC(45)NFNDVTT		0	1	0		ENSG00000085063|ENST00000642928|CD59;nc|ENSG00000284969|P13987-2|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	692.2853393554688	2	692.285334	1382.55611	0.2438	0.00016878	-0.58333	-0.00040383	-0.33953	-0.00023505	692.2852216897787	31.755	0.16458	31.755	31.682	31.847	0					24	7	4	0	0	0	0.48922	1	10209	10209		45.022	19.448	1	271490			10837	1721	6848	6881	11003	11003	72				-0.11986134315611707
FEHDIQAL	8	Unmodified	_FEHDIQAL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7430725097656	2	486.742899	971.471246	-0.31394	-0.00015281	0.042209	2.0545E-05	-0.27173	-0.00013226	486.74301481441546	34.915	0.15553	34.915	34.838	34.993	0					11	4	3	0	0	0	0.67394	1	13054	13054		37.159	4.3467	1	227750			10838	2899	6849	6882	11004	11004					-0.015630919992531744
FEHKEEVL	8	Unmodified	_FEHKEEVL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000489691.1_1_X:54558969-54570464:+|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7640380859375	2	515.763832	1029.51311	1.2135	0.0006259	-0.2537	-0.00013085	0.95985	0.00049506	515.7635353702617	24.493	0.44656	24.493	24.309	24.756	0					15	10	2	0	0	0	0.34592	1	8249	8249		77.318	29.402	1	565410			10839	3620	6850	6883	11005	11005					-0.00046536310719602625
FEHKEEVL	8	Unmodified	_FEHKEEVL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000489691.1_1_X:54558969-54570464:+|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7640991210938	2	515.763832	1029.51311	0.74965	0.00038664	0.19249	9.9279E-05	0.94214	0.00048592	515.7639695962281	24.266	0.22796	24.266	24.172	24.4	0					10	5	3	0	0	0	0.59773	1	7571	7571		49.442	12.282	1	233330			10840	3620	6850	6883	11006	11006					-0.00046536310719602625
FEHPNVVRL	9	Unmodified	_FEHPNVVRL_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;ENSG00000105810|ENST00000424848|CDK6	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.8067016601562	2	555.806365	1109.59818	1.0923	0.00060708	1.3974	0.00077668	2.4896	0.0013838	555.8058894625501	32.632	0.41713	32.632	32.371	32.789	0					12	8	2	0	0	0	0.20551	1	12337	12337		60.972	23.943	1	147610			10841	3995	6851	6884	11007	11007					0.047762539457608
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.3013305664062	2	576.300778	1150.587	1.4817	0.00085389	-0.18579	-0.00010707	1.2959	0.00074682	576.3008654859482	24.098	0.14993	24.098	24.025	24.175	0					10	4	3	0	0	0	0.034064	1	7060	7060		115.23	13.772	1	192790			10842	3144	6852	6885	11008	11008					0.017733870609617952
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.3012084960938	2	576.300778	1150.587	1.5635	0.00090102	0.59259	0.00034151	2.156	0.0012425	576.3011024201134	24.364	0.31978	24.364	24.265	24.585	0					18	7	4	0	0	0	0.010245	1	8204	8204		141.91	29.804	1	1733700			10843	3144	6852	6885	11009	11009					0.017733870609617952
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3009643554688	2	576.300778	1150.587	0.035855	2.0663E-05	2.0653	0.0011902	2.1012	0.0012109	576.3020674047527	24.111	0.23949	24.111	24.018	24.258	0					15	7	3	0	0	0	0.1998	1	7333	7333		79.489	3.3194	1	230340			10844	3144	6852	6885	11010	11010					0.017733870609617952
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.5362243652344	3	384.536278	1150.587	0.25122	9.6605E-05	-0.22939	-8.8208E-05	0.021836	8.3967E-06	384.5361811717663	24.352	0.21741	24.352	24.246	24.463	0					8	4	2	0	0	0	0.66185	1	8529	8529		25.126	0	1	785650			10845	3144	6852	6885	11011	11011					0.017733870609617952
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.3010864257812	2	576.300778	1150.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.175	1	24.175	23.675	24.675	0								0	0	0	0.060926	1	7497	7497		88.134	9.8699	1				10846	3144	6852	6885	11012	11012					0.017733870609617952
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.3012084960938	2	576.300778	1150.587	0.59621	0.00034359	1.082	0.00062354	1.6782	0.00096714	576.3016036682709	24.181	0.19601	24.181	24.078	24.274	0					7	4	2	0	0	0	0.34979	1	7510	7510		61.765	3.5183	1	233150			10847	3144	6852	6885	11013	11013					0.017733870609617952
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.301025390625	2	576.300778	1150.587	0.14887	8.5794E-05	0.45545	0.00026248	0.60432	0.00034827	576.3010889477131	24.287	0.26736	24.287	24.179	24.447	0					10	5	3	0	0	0	0.099683	1	8368	8368		95.483	4.2178	1	845460			10848	3144	6852	6885	11014	11014					0.017733870609617952
FEKDVKGESL	10	Unmodified	_FEKDVKGESL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.5361633300781	3	384.536278	1150.587	0.58117	0.00022348	-0.75473	-0.00029022	-0.17356	-6.6739E-05	384.5359484906702	24.321	0.36747	24.321	24.213	24.58	0					16	7	4	0	0	0	0.60076	1	8384	8384		46.457	1.4346	1	1769700			10849	3144	6852	6885	11015	11015					0.017733870609617952
FEKIHQETF	9	Unmodified	_FEKIHQETF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.7965698242188	2	589.795663	1177.57677	0.12214	7.2041E-05	0.10398	6.1326E-05	0.22612	0.00013337	589.7958988410943	27.953	0.11331	27.953	27.926	28.039	0					5	4	2	0	0	0	0.15593	1	8679	8679		68.846	12.412	1	85348			10850	7301	6853	6886	11016	11016					-0.004911758736170668
FEKIHQETF	9	Unmodified	_FEKIHQETF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.7984008789062	2	589.795663	1177.57677	0.19465	0.00011481	4.1097	0.0024239	4.3044	0.0025387	589.7983439459023	28.203	0.29493	28.203	28.152	28.447	0					12	7	3	0	0	0	0.036187	1	9949	9949		86.882	38.922	1	668740			10851	7301	6853	6886	11017	11017					-0.004911758736170668
FEKIHQETF	9	Unmodified	_FEKIHQETF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.7952270507812	2	589.795663	1177.57677	-0.45676	-0.00026939	0.18816	0.00011098	-0.26859	-0.00015841	589.7957473600165	27.99	0.2037	27.99	27.903	28.106	0					14	7	3	0	0	0	0.055162	1	8972	8972		96.665	53.014	1	197450			10852	7301	6853	6886	11018	11018					-0.004911758736170668
FEKIHQETF	9	Unmodified	_FEKIHQETF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.7960815429688	2	589.795663	1177.57677	1.4809	0.00087341	-1.0225	-0.00060305	0.4584	0.00027036	589.7953433504046	28.232	0.35579	28.232	28.126	28.482	0					20	7	4	0	0	0	0.014661	1	10334	10334		114.86	29.943	1	1102100			10853	7301	6853	6886	11019	11019					-0.004911758736170668
FEKIHQETF	9	Unmodified	_FEKIHQETF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.7984619140625	2	589.795663	1177.57677	-1.7664	-0.0010418	4.0066	0.0023631	2.2402	0.0013213	589.7978618768402	28.049	0.12257	28.049	27.981	28.103	0					6	3	2	0	0	0	0.24928	1	9253	9253		56.632	1.8559	1	135490			10854	7301	6853	6886	11020	11020					-0.004911758736170668
FEKIHQETF	9	Unmodified	_FEKIHQETF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.8030395507812	2	589.795663	1177.57677	3.1831	0.0018774	-1.8031	-0.0010634	1.3801	0.00081395	589.7946756096184	28.186	0.26624	28.186	28.126	28.392	0					9	5	2	0	0	0	0.020818	2	10170	10170;10196		104.42	40.909	1	1201200			10855	7301	6853	6886	11021;11022	11021					-0.004911758736170668
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8132934570312	2	549.813325	1097.6121	0.53879	0.00029624	2.5173	0.001384	3.0561	0.0016803	549.8134027018616	28.515	0.48846	28.515	28.358	28.846	0					28	12	4	0	0	0	0.011893	1	10043	10043		120.87	41.417	1	604990			10856	3778	6854	6887	11023	11023					0.06719486654174034
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8137817382812	2	549.813325	1097.6121	1.7098	0.00094006	-0.28862	-0.00015869	1.4212	0.00078138	549.8128879405724	28.424	0.6563	28.424	28.319	28.976	0					33	13	5	0	0	0	0.01776	1	10422	10422		109.44	32.665	1	4300700			10857	3778	6854	6887	11024	11024					0.06719486654174034
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8138427734375	2	549.813325	1097.6121	1.1557	0.00063541	0.13685	7.5242E-05	1.2925	0.00071065	549.8131414382382	28.245	0.38889	28.245	28.145	28.534	0					22	9	3	0	0	0	0.034688	1	9342	9342		88.177	19.39	1	356920			10858	3778	6854	6887	11025	11025					0.06719486654174034
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8135986328125	2	549.813325	1097.6121	-1.447	-0.0007956	3.3442	0.0018387	1.8972	0.0010431	549.8145265804482	28.236	0.38765	28.236	28.132	28.519	0					21	9	3	0	0	0	0.029571	1	9350	9350		93.143	8.2277	1	508350			10859	3778	6854	6887	11026	11026					0.06719486654174034
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8135375976562	2	549.813325	1097.6121	1.8227	0.0010022	-0.83989	-0.00046178	0.98285	0.00054038	549.8124801451554	28.352	0.86431	28.352	28.245	29.109	0					53	17	5	0	0	0	0.021035	1	10271	10271		104.01	47.293	1	3507800			10860	3778	6854	6887	11027	11027					0.06719486654174034
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8136596679688	2	549.813325	1097.6121	3.7606	0.0020677	-2.1037	-0.0011567	1.6569	0.000911	549.8114825031327	28.405	0.71448	28.405	28.277	28.992	0					37	14	5	0	0	0	0.011893	1	10263	10263		109.48	38.183	1	4080500			10861	3778	6854	6887	11028	11028					0.06719486654174034
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.8780212402344	3	366.877975	1097.6121	3.1655	0.0011614	-2.2093	-0.00081053	0.95625	0.00035083	366.8767994435084	28.415	0.81452	28.415	28.228	29.043	0					47	16	5	0	0	0	0.27249	1	10264	10264		52.937	1.6012	1	2706200			10862	3778	6854	6887	11029	11029					0.06719486654174034
FEKSKEQLTPL	11	Unmodified	_FEKSKEQLTPL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	660.3638305664062	2	660.36391	1318.71327	-1.033	-0.00068214	1.4204	0.00093796	0.38739	0.00025582	660.3649395776458	28.82	0.11707	28.82	28.745	28.863	0					4	2	2	0	0	0	0.33911	1	10611	10611		58.246	10.287	1	99146			10863	5289	6855	6888	11030	11030					0.0666589356624172
FEKTLTPII	9	Unmodified	_FEKTLTPII_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.316162109375	2	531.3157	1060.61685	1.7213	0.00091456	-0.37837	-0.00020103	1.3429	0.00071353	531.3154349195514	42.724	0.13184	42.724	42.635	42.767	0					10	6	2	0	0	0	0.098791	1	16754	16754		79.713	35.596	1	45054			10864	4928	6856	6889	11031	11031					0.0889637079694694
FEKTLTPII	9	Unmodified	_FEKTLTPII_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.3163452148438	2	531.3157	1060.61685	1.6894	0.00089759	-0.14621	-7.7683E-05	1.5432	0.0008199	531.3154649123389	42.664	0.13095	42.664	42.581	42.712	0					5	3	2	0	0	0	0.16002	1	17051	17051		66.429	16.988	1	55278			10865	4928	6856	6889	11032	11032					0.0889637079694694
FEKTQKELL	9	Unmodified	_FEKTQKELL_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.2166748046875	3	379.216768	1134.62847	0.4572	0.00017338	-0.4817	-0.00018267	-0.024497	-9.2896E-06	379.2165866892374	25.871	0.19641	25.871	25.721	25.917	0					6	2	3	0	0	0	0.35021	1	9200	9200		53.089	3.5529	1	472760			10866	11427	6857	6890	11033	11033					0.06654567820282864
FELGIYGAGI	10	Unmodified	_FELGIYGAGI_					0	0	0			REV__tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	REV__tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2781372070312	2	520.276575	1038.5386	3.3727	0.0017547	-3.0344	-0.0015787	0.33834	0.00017603	520.2764393599032	45.378	0.22477	45.378	45.279	45.504	0					21	9	3	0	0	0	0.57532	1	18181	18181		37.159	1.5408	1	124090	+		10867	21787	6858	6891	11034	11034					0.020869382117098212
FELIVQKL	8	Unmodified	_FELIVQKL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.3052673339844	2	495.305136	988.595718	2.8348	0.0014041	-2.6958	-0.0013353	0.13891	6.8802E-05	495.3039885572297	47.164	0.10017	47.164	47.117	47.217	0					5	3	2	0	0	0	0.30066	1	18850	18850		82.241	13.454	1	42360			10868	2528	6859	6892	11035	11035					0.10096405488093296
FELRDSSAY	9	Unmodified	_FELRDSSAY_					0	0	0		DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant;nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3	DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant	DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2569580078125	2	544.256371	1086.49819	1.093	0.00059489	0.014676	7.9875E-06	1.1077	0.00060288	544.2567255104186	31.348	0.14309	31.348	31.303	31.446	0					5	3	2	0	0	0	0.22377	1	10796	10796		58.782	0.97068	1	70456			10869	811	6860	6893	11036	11036					-0.04160028178716857
FELRMSILT	9	Unmodified	_FELRMSILT_					0	0	0			REV__DOCK8|p.M1114Yfs*4|1|0.4|ENSG00000107099|chr9:405014-405015|-/T|frameshift_variant	REV__DOCK8|p.M1114Yfs*4|1|0.4|ENSG00000107099|chr9:405014-405015|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.3065185546875	2	555.30481	1108.59507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.816	1	13.816	13.316	14.316	0								0	0	0	0.3368	1	3297	3297		27.882	18.699	1		+		10870	12736	6861	6894	11037	11037					0.04511242776743529
FELRSCLI	8	Unmodified	_FELRSCLI_					0	0	0		nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;SLC4A8|p.N272Mfs*3|1|0.38|ENSG00000050438|chr12:51458605-51458605|A/-|frameshift_variant;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;SLC4A8|p.F597Lfs*4|1|0.04|ENSG00000050438|chr12:51471417-51471417|T/-|frameshift_variant;ENST00000547697.6_1_12:51844670-51855120:+|nuORF;SLC4A8|p.I294Ffs*26|1|0.27|ENSG00000050438|chr12:51459969-51459969|A/-|frameshift_variant	nc|ENSG00000050438|Q2Y0W8-4|SLC4A8	nc|ENSG00000050438|Q2Y0W8-4|SLC4A8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7649841308594	2	490.76532	979.516088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.735	1	44.735	44.235	45.235	0								0	0	0	1.7419	1	16735	16735		56.721	0	1				10871	1249	6862	6895	11038	11038					0.02551015542451296
FELYGKLDY	9	Unmodified	_FELYGKLDY_					0	0	0			REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.2852172851562	2	574.28714	1146.55973	-1.5001	-0.00086151	-1.8154	-0.0010425	-3.3155	-0.0019041	574.2861968194711	24.462	0.091358	24.462	24.415	24.506	0					4	2	2	0	0	0	0.55379	1	7641	7641		26.693	3.6504	1	60827	+		10872	22053	6863	6896	11039	11039					-0.007690964794164756
FEMATRAAL	9	Unmodified	_FEMATRAAL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.26025390625	2	505.260402	1008.50625	-0.77114	-0.00038963	0.45983	0.00023233	-0.31131	-0.0001573	505.260716096562	35.721	0.16119	35.721	35.659	35.82	0					17	8	3	0	0	0	0.18416	1	12096	12096		63.534	10.182	1	84882			10873	1410	6864	6897	11040	11040					0.0023382753705618597
FEMATRAAL	9	Unmodified	_FEMATRAAL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.26043701171875	2	505.260402	1008.50625	1.0578	0.00053447	-1.7269	-0.00087253	-0.66908	-0.00033806	505.2599277479118	35.957	0.29541	35.957	35.853	36.148	0					18	9	3	0	0	0	0.13726	1	13965	13965		70.816	5.013	1	495980			10874	1410	6864	6897	11041	11041					0.0023382753705618597
FEMATRAAL	9	Unmodified	_FEMATRAAL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2602844238281	2	505.260402	1008.50625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.743	1	35.743	35.243	36.243	0								0	0	0	0.25587	1	12752	12752		42.864	7.246	1				10875	1410	6864	6897	11042	11042					0.0023382753705618597
FEMATRAAL	9	Unmodified	_FEMATRAAL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2604675292969	2	505.260402	1008.50625	1.2311	0.00062202	-1.3274	-0.00067069	-0.096317	-4.8665E-05	505.2598461487476	35.873	0.56127	35.873	35.768	36.329	0					17	11	3	0	0	0	0.047855	1	13878	13878		96.034	46.009	1	672020			10876	1410	6864	6897	11043	11043					0.0023382753705618597
FEMATRAAL	9	Unmodified	_FEMATRAAL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2607421875	2	505.260402	1008.50625	2.9342	0.0014825	-2.5299	-0.0012783	0.40425	0.00020425	505.2593052230138	35.857	0.46448	35.857	35.752	36.217	0					18	9	3	0	0	0	0.047855	1	13891	13891		96.034	51.917	1	1018300			10877	1410	6864	6897	11044	11044					0.0023382753705618597
FEMAVAKV	8	Unmodified	_FEMAVAKV_					0	0	0		ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7413635253906	2	447.741314	893.468075	0.61283	0.00027439	-1.7792	-0.00079662	-1.1664	-0.00052223	447.74074416125336	36.565	0.15118	36.565	36.496	36.647	0					8	4	2	0	0	0	0.58597	1	13797	13797		51.335	4.569	1	95373			10878	10859	6865	6898	11045	11045					0.017079416223964472
FEMAVAKV	8	Unmodified	_FEMAVAKV_					0	0	0		ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7408752441406	2	447.741314	893.468075	-0.41937	-0.00018777	-0.146	-6.5372E-05	-0.56537	-0.00025314	447.74104378312717	36.487	0.21602	36.487	36.329	36.545	0					7	4	2	0	0	0	0.51384	1	14196	14196		58.782	10.866	1	127070			10879	10859	6865	6898	11046	11046					0.017079416223964472
FEMTVEKV	8	Unmodified	_FEMTVEKV_					0	0	0		GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant	GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7493591308594	2	491.749336	981.484119	2.707	0.0013312	-1.4854	-0.00073045	1.2216	0.00060071	491.7484648798788	36.354	0.31614	36.354	36.297	36.613	0					10	6	2	0	0	0	0.29212	1	14136	14136		85.161	16.374	1	361970			10880	8124	6866	6899	11047	11047					-0.007363969313587404
FEMTVEKY	8	Oxidation (M)	_FEM(Oxidation (M))TVEKY_		FEM(1)TVEKY		FEM(56)TVEKY	0	0	1		GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant	GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant	GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7476196289062	2	531.74425	1061.47395	5.1325	0.0027292	0.93549	0.00049744	6.068	0.0032266	531.7447437261922	27.047	0.37558	27.047	26.941	27.316	0					27	13	3	0	0	0	0.54629	1	8550	8550		55.504	9.5523	1	123520			10881	11154	6867	6900	11048	11048		435			-0.05433004656606499
FENATQAL	8	Unmodified	_FENATQAL_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2219543457031	2	447.2218	892.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.726	1	35.726	35.226	36.226	0								0	0	0	1.7419	1	13817	13817		62.107	3.3255	1				10882	2545	6868	6901	11049	11049					-0.021470674076226715
FENGLSLTY	9	Unmodified	_FENGLSLTY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2571411132812	2	522.25584	1042.49713	1.5234	0.00079561	-0.23387	-0.00012214	1.2895	0.00067347	522.2559584303436	33.833	0.14643	33.833	33.756	33.902	0					9	5	2	0	0	0	0.42902	1	11037	11037		39.253	2.8061	1	63655	+		10883	15602	6869	6902	11050	11050					-0.022422425476179342
FENKFAVET	9	Unmodified	_FENKFAVET_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B;ARHGEF7-ITM2B|2|fusion;ARHGEF7-ITM2B|3|fusion;ARHGEF7-ITM2B|1|fusion;ARHGEF7-ITM2B|4|fusion	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.770263671875	2	542.769114	1083.52368	1.8338	0.00099534	-0.52124	-0.00028291	1.3126	0.00071243	542.7687113694674	33.255	0.23586	33.255	33.151	33.387	0					18	9	3	0	0	0	0.019258	1	10792	10792		123.21	46.434	1	219480			10884	4058	6870	6903	11051	11051					-0.014745536562713824
FENKFAVET	9	Unmodified	_FENKFAVET_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B;ARHGEF7-ITM2B|2|fusion;ARHGEF7-ITM2B|3|fusion;ARHGEF7-ITM2B|1|fusion;ARHGEF7-ITM2B|4|fusion	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7696533203125	2	542.769114	1083.52368	0.61891	0.00033592	0.06781	3.6805E-05	0.68672	0.00037273	542.7691095930132	33.439	0.21795	33.439	33.348	33.566	0					9	4	3	0	0	0	0.28504	1	12705	12705		51.528	13.716	1	291810			10885	4058	6870	6903	11052	11052					-0.014745536562713824
FENKFAVET	9	Unmodified	_FENKFAVET_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B;ARHGEF7-ITM2B|2|fusion;ARHGEF7-ITM2B|3|fusion;ARHGEF7-ITM2B|1|fusion;ARHGEF7-ITM2B|4|fusion	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7695922851562	2	542.769114	1083.52368	2.022	0.0010975	-0.9892	-0.00053691	1.0328	0.00056056	542.768509639511	33.441	0.56435	33.441	33.135	33.7	0					36	11	5	0	0	0	0.032181	1	12701	12701		106.88	43.346	1	3086100			10886	4058	6870	6903	11053	11053					-0.014745536562713824
FENLNTVAE	9	Unmodified	_FENLNTVAE_					0	0	0		nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	nc|ENSG00000153898|Q8IZK6-2|MCOLN2	nc|ENSG00000153898|Q8IZK6-2|MCOLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7513427734375	2	518.750921	1035.48729	0.51535	0.00026734	0.05333	2.7665E-05	0.56868	0.000295	518.7509322573487	18.864	1.408	18.864	18.589	19.997	0					112	42	4	0	0	0	0.2873	1	5156	5156		51.335	1.8939	1	5996900			10887	5063	6871	6904	11054	11054					-0.029034305529876292
FENNGVAHRI	10	Unmodified	_FENNGVAHRI_					0	0	0			REV__ENSG00000164951|ENST00000297598|PDP1	REV__ENSG00000164951|ENST00000297598|PDP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.7954711914062	2	578.796529	1155.5785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.209	1	48.209	47.709	48.709	0								0	0	0	0.28704	1	18291	18291		52.937	1.744	1		+		10888	16014	6872	6905	11055	11055					0.006938779349866309
FENVKKELV	9	Unmodified	_FENVKKELV_					0	0	0			REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.21197509765625	3	369.213246	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.329	1	42.329	41.829	42.829	0								0	0	0	0.35737	1	14804	14804		23.523	3.4922	1		+		10889	14688	6873	6906	11056	11056					0.06978585165848017
FEQKAAQL	8	Unmodified	_FEQKAAQL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.75347900390625	2	467.753267	933.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.048	1	25.048	24.548	25.548	0								0	0	0	1.7419	1	7486	7486		51.335	8.9393	1				10890	881	6874	6907	11057	11057					0.022574983804247495
FEQKAAQL	8	Unmodified	_FEQKAAQL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7528991699219	2	467.753267	933.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.364	1	25.364	24.864	25.864	0								0	0	0	1.7419	1	8657	8657		64.207	11.908	1				10891	881	6874	6907	11058	11058					0.022574983804247495
FEQKAAQL	8	Unmodified	_FEQKAAQL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.75347900390625	2	467.753267	933.491981	-0.19656	-9.1943E-05	1.309	0.0006123	1.1125	0.00052036	467.753487484903	25.151	0.14065	25.151	25.098	25.239	0					5	3	2	0	0	0	0.65148	1	7963	7963		40.778	1.972	1	51619			10892	881	6874	6907	11059	11059					0.022574983804247495
FEQVDISEL	9	Unmodified	_FEQVDISEL_					0	0	0			REV__CDH18|p.T706N|1|0.04|ENSG00000145526|chr5:19473482-19473482|G/T|missense_variant	REV__CDH18|p.T706N|1|0.04|ENSG00000145526|chr5:19473482-19473482|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2683715820312	2	540.266404	1078.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.415	1	41.415	40.915	41.915	0								0	0	0	0.23445	1	15740	15740		45.972	1.8554	1		+		10893	12398	6875	6908	11060	11060					-0.017862772387616133
FERIKEEL	8	Unmodified	_FERIKEEL_					0	0	0		tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.29345703125	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.536	1	37.536	37.036	38.036	0								0	0	0	1.7419	1	14684	14684		76.774	0	1				10894	22770	6876	6909	11061	11061					0.04217725614716983
FERTEVLAA	9	Unmodified	_FERTEVLAA_					0	0	0		ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.277099609375	2	518.277106	1034.53966	1.572	0.00081473	-2.0794	-0.0010777	-0.5074	-0.00026297	518.2763763101772	31.262	0.17418	31.262	31.174	31.348	0					12	4	3	0	0	0	0.46194	1	11779	11779		36.447	2.2742	1	527650			10895	3346	6877	6910	11062	11062					0.023771525806068894
FESDPVKSR	9	Unmodified	_FESDPVKSR_					0	0	0			REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7722778320312	2	532.772188	1063.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.553	1	37.553	37.053	38.053	0								0	0	0	0.27939	1	12693	12693		39.253	0.44669	1		+		10896	13002	6878	6911	11063	11063					0.0005996457523451681
FESGISQAL	9	Unmodified	_FESGISQAL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2419738769531	2	476.242732	950.470912	0.77547	0.00036931	-2.0808	-0.00099096	-1.3053	-0.00062165	476.241869963002	41.945	0.29473	41.945	41.848	42.143	0					14	8	2	0	0	0	0.53064	1	16722	16722		29.17	1.2878	1	60707			10897	6329	6879	6912	11064	11064					-0.006305117190890996
FESIYFLI	8	Unmodified	_FESIYFLI_					0	0	0			REV__ENST00000367866.6_1_1:167388477-167388615:+|nuORF	REV__ENST00000367866.6_1_1:167388477-167388615:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.5204772949219	3	344.519788	1030.53753	0.50492	0.00017396	1.6314	0.00056204	2.1363	0.000736	344.52029627832826	18.861	0.33624	18.861	18.833	19.169	0					13	9	2	0	0	0	0.79176	1	5603	5603		17.365	0	1	1414200	+		10898	18599	6880	6913	11065	11065					0.023487238428060664
FESKAALLA	9	Unmodified	_FESKAALLA_					0	0	0		ENST00000588681.5_1_19:11493771-11494883:-|nuORF;nc|ENSG00000187266|P19235-2|EPOR;nc|ENSG00000187266|P19235-3|EPOR;ENSG00000187266|ENST00000222139|EPOR	ENST00000588681.5_1_19:11493771-11494883:-|nuORF	ENST00000588681.5_1_19:11493771-11494883:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.27081298828125	2	475.271293	948.528032	0.61868	0.00029404	-1.7754	-0.0008438	-1.1567	-0.00054976	475.27057479154934	42.652	0.16325	42.652	42.541	42.704	0					13	8	2	0	0	0	0.44593	1	16714	16714		37.812	4.2959	1	61317			10899	7191	6881	6914	11066	11066					0.05170955557287016
FESSQWNIK	9	Unmodified	_FESSQWNIK_					0	0	0		ENST00000593281.1_1_19:11541422-11545627:-|nuORF;nc|ENSG00000198003|A5D8V7-2|ODAD3;ENSG00000198003|ENST00000356392|ODAD3	ENST00000593281.1_1_19:11541422-11545627:-|nuORF	ENST00000593281.1_1_19:11541422-11545627:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.1889953613281	3	380.189101	1137.54547	0.65048	0.00024731	-0.52343	-0.000199	0.12705	4.8302E-05	380.1889389222633	20.69	0.41642	20.69	20.575	20.992	0					16	8	4	0	0	0	0.43426	1	6622	6622		30.318	5.7985	1	924070			10900	7519	6882	6915	11067	11067					-0.017797489077111095
FESWAGQQ	8	Unmodified	_FESWAGQQ_					0	0	0			REV__nc|ENSG00000182366|P0C7U9|FAM87A	REV__nc|ENSG00000182366|P0C7U9|FAM87A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7113952636719	2	476.711599	951.408646	-0.13809	-6.583E-05	0.39726	0.00018938	0.25917	0.00012355	476.71148335394906	25.061	0.35555	25.061	24.909	25.265	0					14	10	2	0	0	0	0.7126	1	7478	7478		31.955	1.4512	1	65517	+		10901	21151	6883	6916	11068	11068					-0.06900238067419195
FETAMRLL	8	Unmodified	_FETAMRLL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7652893066406	2	490.76532	979.516088	0.78936	0.00038739	-0.4498	-0.00022075	0.33956	0.00016664	490.7650558650511	44.65	0.23864	44.65	44.583	44.822	0					20	10	3	0	0	0	0.39125	1	17892	17892		71.877	21.853	1	92269			10902	3256	6884	6917	11069	11069					0.02551015542451296
FETAMRLL	8	Unmodified	_FETAMRLL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.76519775390625	2	490.76532	979.516088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.671	1	44.671	44.171	45.171	0								0	0	0	1.7419	1	17898	17898		35.618	2.1027	1				10903	3256	6884	6917	11070	11070					0.02551015542451296
FETEPVSKL	9	Unmodified	_FETEPVSKL_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2798461914062	2	525.279315	1048.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.639	1	33.639	33.139	34.139	0								0	0	0	0.11736	1	12458	12458		67.494	0	1				10904	7528	6885	6918	11071	11071					0.02174617003538515
FETEPVSKL	9	Unmodified	_FETEPVSKL_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.279541015625	2	525.279315	1048.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.622	1	33.622	33.122	34.122	0								0	0	0	0.22284	1	12883	12883		47.657	10.498	1				10905	7528	6885	6918	11072	11072					0.02174617003538515
FETFNTPA	8	Unmodified	_FETFNTPA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ACTB|p.M132T|1|0.15|ENSG00000075624|chr7:5528688-5528688|A/G|missense_variant;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000587663.1_1_18:60109485-60109668:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.71551513671875	2	463.71635	925.418148	-0.14258	-6.6119E-05	-0.75298	-0.00034917	-0.89557	-0.00041529	463.7159810611612	38.719	0.22747	38.719	38.628	38.855	0					15	8	3	0	0	0	0.3049	1	15198	15198		82.241	32.216	1	123670			10906	1545;6995;7397;7857	6886	6919	11073	11073					-0.04754469781903481
FETFNTPA	8	Unmodified	_FETFNTPA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ACTB|p.M132T|1|0.15|ENSG00000075624|chr7:5528688-5528688|A/G|missense_variant;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000587663.1_1_18:60109485-60109668:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.716064453125	2	463.71635	925.418148	0.69826	0.00032379	-2.6574	-0.0012323	-1.9592	-0.00090851	463.71569787061526	38.695	0.27512	38.695	38.596	38.871	0					21	10	3	0	0	0	0.43813	1	15226	15226		66.429	23.955	1	219970			10907	1545;6995;7397;7857	6886	6919	11074	11074					-0.04754469781903481
FETFNTPA	8	Unmodified	_FETFNTPA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ACTB|p.M132T|1|0.15|ENSG00000075624|chr7:5528688-5528688|A/G|missense_variant;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000587663.1_1_18:60109485-60109668:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.71624755859375	2	463.71635	925.418148	-0.37262	-0.00017279	-0.70319	-0.00032608	-1.0758	-0.00049887	463.71616042073134	38.509	0.16619	38.509	38.422	38.588	0					13	8	2	0	0	0	0.51384	1	13767	13767		58.782	16.307	1	91330			10908	1545;6995;7397;7857	6886	6919	11075	11075					-0.04754469781903481
FETFNTPA	8	Unmodified	_FETFNTPA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ACTB|p.M132T|1|0.15|ENSG00000075624|chr7:5528688-5528688|A/G|missense_variant;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000587663.1_1_18:60109485-60109668:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7158508300781	2	463.71635	925.418148	-0.4796	-0.0002224	-0.23481	-0.00010889	-0.71441	-0.00033128	463.7161953617531	38.703	0.41001	38.703	38.543	38.953	0					16	8	3	0	0	0	0.37378	1	15206	15206		73.975	26.059	1	552860			10909	1545;6995;7397;7857	6886	6919	11076	11076					-0.04754469781903481
FETFNTPA	8	Unmodified	_FETFNTPA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ACTB|p.M132T|1|0.15|ENSG00000075624|chr7:5528688-5528688|A/G|missense_variant;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000587663.1_1_18:60109485-60109668:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.716064453125	2	463.71635	925.418148	0.74774	0.00034674	-1.3454	-0.00062389	-0.59768	-0.00027715	463.7158245248792	38.686	0.35971	38.686	38.526	38.886	0					12	7	2	0	0	0	0.2678	1	15219	15219		93.195	43.754	1	744540			10910	1545;6995;7397;7857	6886	6919	11077	11077					-0.04754469781903481
FETIVKQQI	9	Unmodified	_FETIVKQQI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;ENST00000486275.1_1_21:42817479-42821257:+|nuORF	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.3160400390625	2	553.316232	1104.61791	-1.2	-0.00066395	2.3393	0.0012944	1.1394	0.00063043	553.3176246326364	35.26	0.11666	35.26	35.209	35.326	0					8	4	3	0	0	0	0.13726	1	12551	12551		64.207	21.343	1	56202			10911	5223	6887	6920	11078	11078					0.06978585165848017
FETKITQV	8	Unmodified	_FETKITQV_					0	0	0		ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.26824951171875	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.944	1	31.944	31.444	32.444	0								0	0	0	1.7419	1	12095	12095		40.778	0	1				10912	7863	6888	6921	11079	11079					0.03926651694666816
FETKVTTL	8	Unmodified	_FETKVTTL_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.76312255859375	2	469.7633	937.512048	0.1986	9.3297E-05	-0.75688	-0.00035556	-0.55828	-0.00026226	469.76306070743635	32.868	0.16792	32.868	32.786	32.954	0					10	4	3	0	0	0	0.39125	1	12118	12118		71.877	5.4482	1	266440			10913	5821	6889	6922	11080	11080					0.0407924932038668
FETKVTTL	8	Unmodified	_FETKVTTL_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7631530761719	2	469.7633	937.512048	-0.52979	-0.00024888	-0.29026	-0.00013635	-0.82005	-0.00038523	469.76334548463797	32.832	0.17063	32.832	32.721	32.892	0					8	3	3	0	0	0	0.50061	1	12425	12425		60.118	8.7828	1	190180			10914	5821	6889	6922	11081	11081					0.0407924932038668
FETKVTTL	8	Unmodified	_FETKVTTL_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.76318359375	2	469.7633	937.512048	0.53138	0.00024962	-0.30507	-0.00014331	0.22631	0.00010631	469.7631549478174	32.814	0.1688	32.814	32.706	32.875	0					8	3	3	0	0	0	0.34592	1	12421	12421		77.318	10.888	1	440520			10915	5821	6889	6922	11082	11082					0.0407924932038668
FEVGKKICLS	10	Unmodified	_FEVGKKICLS_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.80908203125	2	562.312635	1122.61072	3.4701	0.0019513	2.0144	0.0011327	5.4845	0.003084	562.3150080352391	29.695	0.60969	29.695	29.472	30.082	0					29	12	3	0	0	0	0.51121	1	10863	10863		44.117	12.162	1	871900			10916	7617	6890	6923	11083	11083					0.0543152929376447
FEVLIALY	8	Unmodified	_FEVLIALY_					0	0	0			REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.27667236328125	2	484.278586	966.54262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.48	1	30.48	29.98	30.98	0								0	0	0	1.7419	1	11289	11289		39.021	1.993	1		+		10917	19700	6891	6924	11084	11084					0.05801027705422257
FEVLKQQKEI	10	Unmodified	_FEVLKQQKEI_					0	0	0		ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2432556152344	3	421.243206	1260.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.213	1	17.213	16.713	17.713	0								0	0	0	0.4201	1	4062	4062		14.086	0	1				10918	193	6892	6925	11085	11085					0.08786214774431755
FEVPFEQIQ	9	Unmodified	_FEVPFEQIQ_					0	0	0		ENSG00000067715|ENST00000261205|SYT1	ENSG00000067715|ENST00000261205|SYT1	ENSG00000067715|ENST00000261205|SYT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.7838134765625	2	568.784764	1135.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.614	1	29.614	29.114	30.114	0								0	0	0	0.17378	1	9366	9366		54.776	3.4409	1				10919	1413	6893	6926	11086	11086					-0.007379806221706531
FEVSVDKAQ	9	Unmodified	_FEVSVDKAQ_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant;FLNB|p.G531Dfs*42|3|0.4|ENSG00000136068|chr3:58104061-58104061|G/-|frameshift_variant;FLNB|p.H532Tfs*9|1|0.31|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;FLNB|p.N453Kfs*26|1|0.31|ENSG00000136068|chr3:58102212-58102213|-/A|frameshift_variant	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.765380859375	2	511.761289	1021.50803	3.1081	0.0015906	0.24718	0.0001265	3.3552	0.0017171	511.7622237595055	31.051	0.35932	31.051	30.946	31.305	0					19	7	4	0	0	0	0.19605	1	11558	11558		62.107	0	1	950240			10920	4052	6894	6927	11087	11087					-0.0018684017333043812
FEVTDETIQK	10	Unmodified	_FEVTDETIQK_					0	0	0			REV__ENSG00000117528|ENST00000370214|ABCD3	REV__ENSG00000117528|ENST00000370214|ABCD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	605.3060913085938	2	605.303518	1208.59248	3.0051	0.001819	0.95393	0.00057742	3.9591	0.0023964	605.3040735330336	16.174	0.37109	16.174	16.063	16.434	0					13	7	2	0	0	0	0.14426	1	4412	4412		87.696	87.696	1	917620	+		10921	14200	6895	6928	11088	11088					-0.0034693414722823945
FEWENKVTV	9	Unmodified	_FEWENKVTV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526527.1_1_11:14481741-14482839:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2905883789062	2	576.290214	1150.56587	1.6953	0.00097701	-1.5862	-0.00091411	0.10915	6.2899E-05	576.2891844902747	42.133	0.28287	42.133	42.024	42.307	0					16	7	3	0	0	0	0.30841	1	16790	16790		49.536	10.782	1	172500			10922	3578	6896	6929	11089	11089					-0.0033857824791994062
FFAGMAVLSGP	11	Unmodified	_FFAGMAVLSGP_					0	0	0		nc|ENSG00000168679|O15374-3|SLC16A4;nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4	nc|ENSG00000168679|O15374-3|SLC16A4	nc|ENSG00000168679|O15374-3|SLC16A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.780029296875	2	548.778428	1095.5423	0.37696	0.00020687	-2.8548	-0.0015667	-2.4779	-0.0013598	548.780195803376	32.293	0.35344	32.293	32.115	32.469	0					32	15	3	0	0	0	0.42875	1	10780	10780		49.442	12.995	1	137980			10923	6110	6897	6930	11090	11090					-0.0016471528608690278
FFAPPFALFM	10	Oxidation (M)	_FFAPPFALFM(Oxidation (M))_		FFAPPFALFM(1)		FFAPPFALFM(55)	0	0	1			REV__ENST00000254801.8_1_4:71521590-71521722:-|nuORF	REV__ENST00000254801.8_1_4:71521590-71521722:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.2998657226562	2	602.298996	1202.58344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.084	1	33.084	32.584	33.584	0								0	0	0	0.27548	1	12632	12632		54.765	10.234	1		+		10924	17978	6898	6931	11091	11091		674			-0.009749542466352068
FFCRQLSI	8	Unmodified	_FFCRQLSI_					0	0	0			REV__P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant	REV__P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.26678466796875	2	507.265487	1012.51642	1.2873	0.000653	0.88308	0.00044795	2.1704	0.001101	507.26597796337177	36.673	0.60676	36.673	36.462	37.068	0					30	12	4	0	0	0	0.39542	1	14258	14258		71.378	13.567	1	3902300	+		10925	13273	6899	6932	11092	11092					0.010664352623052764
FFEAKVQAL	9	Unmodified	_FFEAKVQAL_					0	0	0		nc|ENSG00000115468|Q9BUP0-2|EFHD1;ENSG00000115468|ENST00000264059|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7928466796875	2	526.792392	1051.57023	1.6278	0.00085753	-1.2655	-0.00066666	0.36232	0.00019087	526.791498134695	39.788	0.46047	39.788	39.686	40.147	0					13	10	2	0	0	0	0.037924	1	15763	15763		101.25	0	1	340470			10926	2912	6900	6933	11093	11093					0.046509309656585174
FFEEGPAKY	9	Unmodified	_FFEEGPAKY_					0	0	0			REV__LRWD1|p.V387Sfs*120|1|0.37|ENSG00000161036|chr7:102468990-102468990|G/-|frameshift_variant	REV__LRWD1|p.V387Sfs*120|1|0.37|ENSG00000161036|chr7:102468990-102468990|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2567138671875	2	544.258382	1086.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.342	1	31.342	30.842	31.842	0								0	0	0	0.34845	1	10068	10068		25.574	1.07	1		+		10927	15775	6901	6934	11094	11094					-0.0375793868497567
FFELNYQF	8	Unmodified	_FFELNYQF_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2616577148438	2	554.260925	1106.5073	0.97221	0.00053886	0.4501	0.00024947	1.4223	0.00078833	554.2614046290721	37.849	0.44548	37.849	37.61	38.055	0					27	9	4	0	0	0	0.49216	1	14757	14757		60.972	15	1	236640			10928	7514	6902	6935	11095	11095					-0.04169634822392254
FFFGVWCF	8	Unmodified	_FFFGVWCF_					0	0	0			REV__ENST00000248071.5_1_19:16438179-16438317:+|nuORF	REV__ENST00000248071.5_1_19:16438179-16438317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.739013671875	2	526.738574	1051.4626	0.62315	0.00032824	-0.14571	-7.6749E-05	0.47745	0.00025149	526.7385422522216	39.855	0.14616	39.855	39.796	39.943	0					6	3	2	0	0	0	0.70073	1	15787	15787		33.493	4.3434	1	51364	+		10929	17950	6903	6936	11096	11096					-0.061077371693954774
FFFLFVFCSFF	11	Unmodified	_FFFLFVFCSFF_					0	0	0			REV__ENST00000216727.8_1_14:23795141-23795348:+|nuORF	REV__ENST00000216727.8_1_14:23795141-23795348:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	725.8524169921875	2	725.848853	1449.68315	1.0389	0.0007541	2.9165	0.0021169	3.9554	0.002871	726.3520244293211	54.395	0.089943	54.395	54.345	54.435	0					9	5	2	0	0	0	0.75945	1	15970	15970		21.96	5.4867	1	56228	+		10930	17886	6904	6937	11097	11097					-0.023701366326577045
FFFTNTEY	8	Unmodified	_FFFTNTEY_					0	0	0			REV__ENST00000467726.1_1_7:56154661-56156634:-|nuORF	REV__ENST00000467726.1_1_7:56154661-56156634:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7368774414062	2	534.737283	1067.46001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.679	1	36.679	36.179	37.179	0								0	0	0	1.7419	1	14302	14302		60.972	18.576	1		+		10931	16005	6905	6938	11098	11098					-0.07101914093368578
FFGGLLVAIA	10	Unmodified	_FFGGLLVAIA_					0	0	0		SLC13A2|p.E205Dfs*232|1|0.21|ENSG00000007216|chr17:28491476-28491477|-/T|frameshift_variant;ENSG00000007216|ENST00000314669|SLC13A2;nc|ENSG00000007216|Q13183-2|SLC13A2;nc|ENSG00000007216|Q13183-3|SLC13A2	SLC13A2|p.E205Dfs*232|1|0.21|ENSG00000007216|chr17:28491476-28491477|-/T|frameshift_variant	SLC13A2|p.E205Dfs*232|1|0.21|ENSG00000007216|chr17:28491476-28491477|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2991943359375	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.47	1	25.47	24.97	25.97	0								0	0	0	0.37129	1	7926	7926		26.796	0	1				10932	999	6906	6939	11099	11099					0.08212422833673827
FFGLTLPNY	9	Unmodified	_FFGLTLPNY_					0	0	0		nc|ENSG00000170482|Q9UHI7-2|SLC23A1;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-3|SLC23A1	nc|ENSG00000170482|Q9UHI7-2|SLC23A1	nc|ENSG00000170482|Q9UHI7-2|SLC23A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2781982421875	2	536.279118	1070.54368	3.3534	0.0017983	-3.5208	-0.0018882	-0.16747	-8.981E-05	536.277360207802	37.049	0.306	37.049	36.897	37.203	0					12	6	2	0	0	0	0.16524	1	14487	14487		65.803	2.4969	1	570400			10933	6240	6907	6940	11100	11100					0.011232420743453986
FFGVCFFVV	9	Unmodified	_FFGVCFFVV_					0	0	0		ENST00000412082.6_1_16:20935625-20935910:+|nuORF	ENST00000412082.6_1_16:20935625-20935910:+|nuORF	ENST00000412082.6_1_16:20935625-20935910:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7678833007812	2	532.767332	1063.52011	3.4033	0.0018132	-1.6418	-0.00087468	1.7615	0.00093848	532.7667439020944	12.721	0.09697	12.721	12.676	12.773	0					4	2	2	0	0	0	0.52436	1	2788	2788		29.842	1.9593	1	310930			10934	9316	6908	6941	11101	11101					-0.009108949638402919
FFIFKTSA	8	Unmodified	_FFIFKTSA_					0	0	0		ENST00000428109.5_1_6:13328159-13328339:-|nuORF	ENST00000428109.5_1_6:13328159-13328339:-|nuORF	ENST00000428109.5_1_6:13328159-13328339:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7624816894531	2	480.763104	959.511654	-2.9245	-0.001406	1.2401	0.00059622	-1.6844	-0.0008098	480.7638705721774	30.286	0.25305	30.286	30.133	30.386	0					16	6	3	0	0	0	0.69548	1	10268	10268		34.173	34.173	1	340310			10935	9461	6909	6942	11102	11102					0.030278743911821948
FFIGCVFCIA	10	Unmodified	_FFIGCVFCIA_					0	0	0			REV__SFT2D1|p.V45I|2|0.2|ENSG00000198818|chr6:166330178-166330178|C/T|missense_variant	REV__SFT2D1|p.V45I|2|0.2|ENSG00000198818|chr6:166330178-166330178|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.2701416015625	2	560.271924	1118.52929	0.12513	7.0109E-05	-3.2149	-0.0018012	-3.0898	-0.0017311	560.2706272323883	30.309	0.29511	30.309	30.214	30.509	0					19	9	3	0	0	0	0.21242	1	9938	9938		77.944	30.287	1	232170	+		10936	21510	6910	6943	11103	11103					-0.025228696698150088
FFIGCVFCIA	10	Unmodified	_FFIGCVFCIA_					0	0	0			REV__SFT2D1|p.V45I|2|0.2|ENSG00000198818|chr6:166330178-166330178|C/T|missense_variant	REV__SFT2D1|p.V45I|2|0.2|ENSG00000198818|chr6:166330178-166330178|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.2693481445312	2	560.271924	1118.52929	-0.85936	-0.00048147	-2.4171	-0.0013543	-3.2765	-0.0018357	560.2703942564528	30.327	0.25801	30.327	30.21	30.468	0					14	6	3	0	0	0	0.3122	1	10301	10301		65.897	24.471	1	390680	+		10937	21510	6910	6943	11104	11104					-0.025228696698150088
FFIYQDTY	8	Unmodified	_FFIYQDTY_					0	0	0		tr|U7T4W6|U7T4W6_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00220PE=4SV=1	tr|U7T4W6|U7T4W6_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00220PE=4SV=1	tr|U7T4W6|U7T4W6_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00220PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7510375976562	2	548.752933	1095.49131	-0.30044	-0.00016487	-2.7067	-0.0014853	-3.0071	-0.0016502	548.7510447334372	31.655	0.21822	31.655	31.573	31.791	0					13	8	2	0	0	0	0.29286	1	10499	10499		84.916	13.62	1	218870			10938	22995	6911	6944	11105	11105					-0.052613410592812215
FFKNPALGL	9	Unmodified	_FFKNPALGL_					0	0	0			REV__ENST00000512751.5_1_5:112312677-112343644:+|nuORF	REV__ENST00000512751.5_1_5:112312677-112343644:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1939392089844	3	336.195527	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.831	1	21.831	21.331	22.331	0								0	0	0	0.36266	1	6332	6332		21.96	0	1		+		10939	16478	6912	6945	11106	11106					0.0621925217384387
FFKQKQKK	8	Unmodified	_FFKQKQKK_					0	0	0		ENST00000334512.9_1_10:81074272-81074494:+|nuORF	ENST00000334512.9_1_10:81074272-81074494:+|nuORF	ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.220703125	3	361.222076	1080.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.638	1	17.638	17.138	18.138	0								0	0	0	1.7419	1	4438	4438		16.473	1.6083	1				10940	8694	6913	6946	11107	11107					0.1073031884784541
FFLAPLHDY	9	Unmodified	_FFLAPLHDY_					0	0	0			REV__TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	REV__TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7833251953125	2	561.784567	1121.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.885	1	41.885	41.385	42.385	0								0	0	0	0.20652	1	13862	13862		50.025	2.3672	1		+		10941	17100	6914	6947	11108	11108					-0.0013335555138382915
FFLLIREW	8	Unmodified	_FFLLIREW_					0	0	0			REV__tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	REV__tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.31689453125	2	562.318577	1122.6226	0.04098	2.3044E-05	-3.9868	-0.0022418	-3.9458	-0.0022188	562.316797720793	29.814	0.31616	29.814	29.633	29.949	0					10	6	2	0	0	0	0.59916	1	11084	11084		49.211	16.398	1	75978	+		10942	22069	6915	6948	11109	11109					0.06619514099270418
FFLPRDER	8	Unmodified	_FFLPRDER_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.2852783203125	2	540.285266	1078.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.484	1	26.484	25.984	26.984	0								0	0	0	1.7419	1	8334	8334		15.642	0.77694	1		+		10943	17233	6916	6949	11110	11110					0.01984278537361206
FFLQTALSAF	10	Unmodified	_FFLQTALSAF_					0	0	0		ENST00000590891.1_1_16:4660442-4660589:-|nuORF	ENST00000590891.1_1_16:4660442-4660589:-|nuORF	ENST00000590891.1_1_16:4660442-4660589:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.5412292480469	3	382.206092	1143.59645	3.2309	0.0012349	-0.58623	-0.00022406	2.6447	0.0010108	382.20600063818387	33.676	0.3261	33.676	33.566	33.892	0					14	7	4	0	0	0	0.51121	1	12863	12863		56.434	15.007	1	1384200			10944	10958	6917	6950	11111	11111					0.03039200137118314
FFLSQLMLAP	10	Oxidation (M)	_FFLSQLM(Oxidation (M))LAP_		FFLSQLM(1)LAP		FFLSQLM(41)LAP	0	0	1		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.8152465820312	2	591.81501	1181.61547	0.25686	0.00015201	-0.54349	-0.00032164	-0.28663	-0.00016963	591.8147552702593	22.026	0.44028	22.026	21.854	22.295	0					24	10	4	0	0	0	0.54197	1	7102	7102		40.778	9.2484	1	546820			10945	5263	6918	6951	11112	11112		213			0.03192413436545394
FFMVMLAF	8	Oxidation (M)	_FFM(Oxidation (M))VMLAF_		FFM(0.946)VM(0.054)LAF		FFM(12)VM(-12)LAF	0	0	1			REV__nc|ENSG00000134744|Q5TAX3|TUT4;REV__nc|ENSG00000134744|Q5TAX3-2|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2462158203125	2	511.247917	1020.48128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.83	1	29.83	29.33	30.33	0								0	0	0	1.7419	1	10084	10084		67.327	12.563	2		+		10946	14759;21027	6919	6952	11113	11113		558			-0.02813943589842438
FFNGGKLMF	9	Unmodified	_FFNGGKLMF_					0	0	0			REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2686157226562	2	530.767863	1059.52117	-1.2189	-0.00064697	0.49929	0.00026501	-0.71964	-0.00038196	530.7682493950117	40.818	0.096802	40.818	40.735	40.832	0					9	5	2	0	0	0	0.32741	1	14467	14467		47.916	12.715	1	107410	+		10947	17091	6920	6953	11114	11114					-0.006206805949204863
FFPDRDQPPP	10	Unmodified	_FFPDRDQPPP_					0	0	0			REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.2969360351562	2	608.293288	1214.57202	0.8156	0.00049612	2.7156	0.0016519	3.5312	0.002148	608.2959199443736	26.268	1.1412	26.268	25.738	26.879	0					45	21	4	0	0	0	0.52275	1	9371	9371		42.864	2.0861	1	706590	+		10948	16996	6921	6954	11115	11115					-0.026680600163899726
FFPTPRAHQ	9	Unmodified	_FFPTPRAHQ_					0	0	0			REV__nc|ENSG00000085276|Q03112-8|MECOM	REV__nc|ENSG00000085276|Q03112-8|MECOM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.7852172851562	2	550.785433	1099.55631	-1.3777	-0.00075881	1.033	0.00056895	-0.34472	-0.00018986	550.7859830217099	36.401	0.32621	36.401	36.29	36.616	0					31	15	3	0	0	0	0.39215	1	13020	13020		42.396	42.396	1	387410	+		10949	13354	6922	6955	11116	11116					0.010516982572426059
FFQDLKEET	9	Unmodified	_FFQDLKEET_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;MICAL2|p.K273N|1|0.34|ENSG00000133816|chr11:12213382-12213382|A/T|missense_variant	nc|ENSG00000133816|O94851-3|MICAL2	nc|ENSG00000133816|O94851-3|MICAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.18865966796875	3	386.188878	1155.5448	-1.1818	-0.00045639	0.81216	0.00031365	-0.36963	-0.00014275	386.18911062470477	22.472	0.45021	22.472	22.326	22.776	0					30	14	3	0	0	0	0.53083	1	6632	6632		29.17	0	1	280900			10950	3873	6923	6956	11117	11117					-0.02674588347417739
FFREERGVH	9	Unmodified	_FFREERGVH_					0	0	0		WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant;WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant;WNK4|p.V608Cfs*53|4|0.4|ENSG00000126562|chr17:42787852-42787852|G/-|frameshift_variant;nc|ENSG00000126562|Q96J92-2|WNK4;nc|ENSG00000126562|Q96J92-3|WNK4;WNK4|p.V1234*|1|0.28|ENSG00000126562|chr17:42796545-42796545|G/-|frameshift_variant;ENSG00000126562|ENST00000246914|WNK4;WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant	WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant;WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant	WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.80126953125	2	588.799072	1175.58359	0.74197	0.00043687	2.9543	0.0017395	3.6962	0.0021763	588.8009498689703	43.49	0.12492	43.49	43.455	43.58	0					10	7	2	0	0	0	0.53064	1	15066	15066		29.15	0	1	51273			10951	23119;23118	6924	6957	11118	11118					0.0028218179761552165
FFRTDSQL	8	Unmodified	_FFRTDSQL_					0	0	0		nc|ENSG00000189164|Q8NB42-2|ZNF527;ENSG00000189164|ENST00000436120|ZNF527	nc|ENSG00000189164|Q8NB42-2|ZNF527	nc|ENSG00000189164|Q8NB42-2|ZNF527	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2557373046875	2	507.256174	1012.49779	0.8919	0.00045242	-0.78502	-0.00039821	0.10688	5.4216E-05	507.25576816065757	26.478	0.49588	26.478	26.34	26.835	0					27	11	3	0	0	0	0.57802	1	9273	9273		52.299	9.8247	1	321150			10952	7306	6925	6958	11119	11119					-0.007954031079066226
FFSRSPAHS	9	Unmodified	_FFSRSPAHS_					0	0	0		nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2528076171875	2	518.253966	1034.49338	-0.39288	-0.00020361	-1.947	-0.0010091	-2.3399	-0.0012127	518.2529143095912	14.621	0.52997	14.621	14.201	14.731	0					23	11	3	0	0	0	0.45358	1	3843	3843		37.159	4.3467	1	796650			10953	11790	6926	6959	11120	11120					-0.02248867530829557
FFTHFSSL	8	Unmodified	_FFTHFSSL_					0	0	0		ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ANO9|p.D688Ifs*44|1|0.15|ENSG00000185101|chr11:418789-418789|G/-|frameshift_variant;ENSG00000185101|ENST00000332826|ANO9;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2422790527344	2	493.242535	984.470518	-0.74492	-0.00036743	0.13775	6.7942E-05	-0.60718	-0.00029949	493.2425425222382	31.663	0.25619	31.663	31.538	31.795	0					10	5	3	0	0	0	0.39542	1	11967	11967		71.378	1.7503	1	148280			10954	167	6927	6960	11121	11121					-0.022338866482755293
FFTPLWSL	8	Unmodified	_FFTPLWSL_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7705078125	2	505.770929	1009.5273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.936	1	33.936	33.436	34.436	0								0	0	0	1.7419	1	11422	11422		42.474	3.453	1		+		10955	13592	6928	6961	11122	11122					0.022921609082231953
FFVNYVIMAA	10	Unmodified	_FFVNYVIMAA_					0	0	0		TMEM63C|p.T551M|1|0.23|ENSG00000165548|chr14:77248397-77248397|C/T|missense_variant	TMEM63C|p.T551M|1|0.23|ENSG00000165548|chr14:77248397-77248397|C/T|missense_variant	TMEM63C|p.T551M|1|0.23|ENSG00000165548|chr14:77248397-77248397|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.802978515625	2	587.801903	1173.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.485	1	26.485	25.985	26.985	0								0	0	0	0.4201	1	8534	8534		11.511	0	1				10956	22546	6929	6962	11123	11123					0.009401442650641911
FFVQRMVV	8	Unmodified	_FFVQRMVV_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-2|HPSE	REV__nc|ENSG00000173083|Q9Y251-2|HPSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2850952148438	2	513.28368	1024.55281	1.4478	0.00074314	2.0771	0.0010661	3.5249	0.0018093	513.2847347782917	32.514	0.27232	32.514	32.404	32.676	0					11	5	3	0	0	0	0.68754	1	12280	12280		35.201	2.3883	1	430310	+		10957	16491	6930	6963	11124	11124					0.04151312159024201
FFVRAPVLM	9	Oxidation (M)	_FFVRAPVLM(Oxidation (M))_		FFVRAPVLM(1)		FFVRAPVLM(50)	0	0	1			REV__ENSG00000189339|ENST00000617444|SLC35E2B	REV__ENSG00000189339|ENST00000617444|SLC35E2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.3080444335938	2	548.304613	1094.59467	3.8201	0.0020946	2.5098	0.0013761	6.3299	0.0034707	548.3059025165443	46.171	0.29539	46.171	46.056	46.351	0					18	13	2	0	0	0	0.30268	1	18461	18461		50.025	7.6284	1	56917	+		10958	17219	6931	6964	11125	11125		657			0.05115867847507616
FFVRGSRPT	9	Unmodified	_FFVRGSRPT_					0	0	0		ENST00000263776.8_1_11:44087965-44089254:+|nuORF	ENST00000263776.8_1_11:44087965-44089254:+|nuORF	ENST00000263776.8_1_11:44087965-44089254:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7921142578125	2	533.793258	1065.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.29	1	13.29	12.79	13.79	0								0	0	0	0.37517	1	3048	3048		18.262	2.6203	1				10959	8321	6932	6965	11126	11126					0.04179984774305012
FFVTLGVFS	9	Unmodified	_FFVTLGVFS_					0	0	0		SYPL2|p.I123V|1|0.18|ENSG00000143028|chr1:109476888-109476888|A/G|missense_variant	SYPL2|p.I123V|1|0.18|ENSG00000143028|chr1:109476888-109476888|A/G|missense_variant	SYPL2|p.I123V|1|0.18|ENSG00000143028|chr1:109476888-109476888|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.77459716796875	2	508.776211	1015.53787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.075	1	49.075	48.575	49.575	0								0	0	0	0.28164	1	18493	18493		38.806	5.2906	1				10960	22510	6933	6966	11127	11127					0.030721435626787752
FFWGPTSGV	9	Unmodified	_FFWGPTSGV_					0	0	0			REV__ENST00000368761.9_1_6:111880407-111880587:-|nuORF	REV__ENST00000368761.9_1_6:111880407-111880587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2427673339844	2	499.242535	996.470518	-0.73546	-0.00036717	2.8133	0.0014045	2.0778	0.0010373	499.2439847098771	13.266	0.11543	13.266	13.159	13.275	0					4	2	2	0	0	0	0.61124	1	3028	3028		19.36	1.892	1	52524	+		10961	18613	6934	6967	11128	11128					-0.027858866482802114
FFYMPTHLA	9	Unmodified	_FFYMPTHLA_					0	0	0			REV__ENSG00000173285|ENST00000641535|OR10K1	REV__ENSG00000173285|ENST00000641535|OR10K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.7750244140625	2	563.773145	1125.53174	1.2493	0.00070433	1.9754	0.0011137	3.2247	0.001818	563.7741189531204	13.014	0.088949	13.014	12.96	13.049	0					5	3	2	0	0	0	0.61124	1	2527	2527		18.324	1.6194	1	108650	+		10962	16505	6935	6968	11129	11129					-0.026006979404883168
FGADARAL	8	Unmodified	_FGADARAL_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	410.7190246582031	2	410.719227	819.423902	0.64635	0.00026547	-0.86022	-0.00035331	-0.21387	-8.7842E-05	410.7188081343062	29.801	0.19774	29.801	29.714	29.912	0					14	8	2	0	0	0	0.43813	1	9424	9424		66.429	18.514	1	254910			10963	4612	6936	6969	11130	11130					0.006966735204173347
FGADARAL	8	Unmodified	_FGADARAL_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.7190246582031	2	410.719227	819.423902	0.055725	2.2887E-05	-0.34995	-0.00014373	-0.29423	-0.00012085	410.7190261179966	30.067	0.37013	30.067	29.964	30.334	0					17	8	3	0	0	0	0.3049	1	11188	11188		82.241	34.583	1	1102000			10964	4612	6936	6969	11131	11131					0.006966735204173347
FGADARAL	8	Unmodified	_FGADARAL_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	410.7192687988281	2	410.719227	819.423902	0.11515	4.7294E-05	-0.67094	-0.00027557	-0.55579	-0.00022827	410.7190212199395	29.853	0.22525	29.853	29.778	30.003	0					9	6	2	0	0	0	0.35045	1	10088	10088		76.774	32.657	1	170430			10965	4612	6936	6969	11132	11132					0.006966735204173347
FGADARAL	8	Unmodified	_FGADARAL_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	410.71942138671875	2	410.719227	819.423902	-0.084683	-3.4781E-05	-0.18737	-7.6958E-05	-0.27206	-0.00011174	410.71913325366364	29.868	0.22136	29.868	29.765	29.986	0					11	6	2	0	0	0	0.3049	1	10096	10096		82.241	36.289	1	176630			10966	4612	6936	6969	11133	11133					0.006966735204173347
FGADARAL	8	Unmodified	_FGADARAL_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.7190856933594	2	410.719227	819.423902	-0.4758	-0.00019542	0.35392	0.00014536	-0.12188	-5.006E-05	410.71932002410824	30.005	0.46341	30.005	29.896	30.359	0					19	9	4	0	0	0	0.3049	1	11067	11067		82.241	34.583	1	1533200			10967	4612	6936	6969	11134	11134					0.006966735204173347
FGAFHSPAL	9	Unmodified	_FGAFHSPAL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;EHD2|p.P90Lfs*76|1|0.35|ENSG00000024422|chr19:47716876-47716876|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7420959472656	2	473.742702	945.470852	0.60429	0.00028628	-1.1489	-0.00054427	-0.54457	-0.00025799	473.74213034867415	40.115	0.23463	40.115	39.992	40.226	0					15	8	3	0	0	0	0.23186	1	15810	15810		57.811	10.154	1	129880			10968	1125	6937	6970	11135	11135					-0.004064669284275624
FGAFYIPL	8	Unmodified	_FGAFYIPL_					0	0	0		HTR1F|p.F310Lfs*2|2|0.41|ENSG00000179097|chr3:87991673-87991673|T/-|frameshift_variant;HTR1F|p.L332Wfs*11|1|0.39|ENSG00000179097|chr3:87991739-87991739|T/-|frameshift_variant;ENSG00000179097|ENST00000319595|HTR1F;ENSG00000178394|ENST00000323865|HTR1A	HTR1F|p.F310Lfs*2|2|0.41|ENSG00000179097|chr3:87991673-87991673|T/-|frameshift_variant	HTR1F|p.F310Lfs*2|2|0.41|ENSG00000179097|chr3:87991673-87991673|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.25164794921875	2	464.252372	926.49019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.105	1	35.105	34.605	35.605	0								0	0	0	1.7419	1	13580	13580		43.626	16.83	1				10969	6714	6938	6971	11136	11136					0.024004893624805845
FGDCFPTPPN	10	Unmodified	_FGDCFPTPPN_					0	0	0		ENSG00000237136|ENST00000438731|C4orf51	ENSG00000237136|ENST00000438731|C4orf51	ENSG00000237136|ENST00000438731|C4orf51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7330322265625	2	547.734217	1093.45388	0.33033	0.00018093	-2.269	-0.0012428	-1.9386	-0.0010618	547.7331226709572	22.341	0.36283	22.341	22.187	22.55	0					12	7	2	0	0	0	0.62235	1	7588	7588		31.53	3.4483	1	175230			10970	7913	6939	6972	11137	11137					-0.08910755596525632
FGFAGTVL	8	Unmodified	_FGFAGTVL_					0	0	0			REV__ENSG00000089692|ENST00000203629|LAG3	REV__ENSG00000089692|ENST00000203629|LAG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.7164306640625	2	406.221072	810.42759	-2.281	-0.0009266	-3.342	-0.0013576	-5.623	-0.0022842	406.2198843131885	24.072	0.43453	24.072	23.828	24.263	0					19	10	3	0	0	0	0.79176	1	7366	7366		21.702	4.3374	1	1003200	+		10971	13413	6940	6973	11138	11138					0.01479343294283808
FGFYFTMPM	9	Unmodified	_FGFYFTMPM_					0	0	0			REV__ENST00000451221.1_1_3:172321509-172321743:-|nuORF	REV__ENST00000451221.1_1_3:172321509-172321743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7496948242188	2	570.748282	1139.48201	0.20052	0.00011445	2.083	0.0011889	2.2836	0.0013033	570.749718448031	31.973	0.31849	31.973	31.818	32.136	0					16	6	4	0	0	0	0.42902	1	11999	11999		17.365	3.2278	1	523050	+		10972	14884	6941	6974	11139	11139					-0.08215148940803374
FGGGGGTR	8	Unmodified	_FGGGGGTR_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.67462158203125	2	354.67482	707.335087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.132	1	15.132	14.632	15.632	0								0	0	0	1.7419	1	4076	4076		56.721	10.769	1				10973	6977	6942	6975	11140	11140					-0.03028741719242589
FGGLGSKSK	9	Unmodified	_FGGLGSKSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.7476806640625	2	440.747985	879.481417	0.2897	0.00012768	-0.7609	-0.00033537	-0.4712	-0.00020768	440.74757811084214	20.733	0.10651	20.733	20.669	20.776	0					5	3	2	0	0	0	0.023928	1	5610	5610		115.49	56.712	1	232970			10974	3401	6943	6976	11141	11141					0.036855157259992666
FGGLGSKSK	9	Unmodified	_FGGLGSKSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7475891113281	2	440.747985	879.481417	-1.0601	-0.00046722	0.31774	0.00014004	-0.74231	-0.00032717	440.74800691151944	20.757	0.17723	20.757	20.692	20.869	0					10	6	2	0	0	0	0.01873	1	5858	5858		124.08	65.298	1	244810			10975	3401	6943	6976	11142	11142					0.036855157259992666
FGGLGSKSK	9	Unmodified	_FGGLGSKSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.74786376953125	2	440.747985	879.481417	0.55466	0.00024447	-0.78229	-0.00034479	-0.22763	-0.00010033	440.7476105629885	20.972	0.21479	20.972	20.863	21.078	0					10	4	3	0	0	0	0.012231	1	6894	6894		136.27	67.481	1	1279200			10976	3401	6943	6976	11143	11143					0.036855157259992666
FGGLGSKSK	9	Unmodified	_FGGLGSKSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.74774169921875	2	440.747985	879.481417	-0.55943	-0.00024657	0.19413	8.5561E-05	-0.36531	-0.00016101	440.74801156962855	20.837	0.14657	20.837	20.78	20.927	0					7	3	3	0	0	0	0.07136	1	5947	5947		87.696	43.58	1	157130			10977	3401	6943	6976	11144	11144					0.036855157259992666
FGGLGSKSK	9	Unmodified	_FGGLGSKSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.7477722167969	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.005	1	21.005	20.505	21.505	0								0	0	0	0.0075199	1	6768	6768		112.41	59.059	1				10978	3401	6943	6976	11145	11145					0.036855157259992666
FGGPPPKA	8	Unmodified	_FGGPPPKA_					0	0	0		ENST00000484157.5_1_1:155107991-155108063:+|nuORF	ENST00000484157.5_1_1:155107991-155108063:+|nuORF	ENST00000484157.5_1_1:155107991-155108063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.7133483886719	2	385.713414	769.412274	0.020292	7.827E-06	0.53937	0.00020804	0.55966	0.00021587	385.7134638994167	29.166	0.37127	29.166	29.034	29.406	0					16	9	3	0	0	0	0.68754	1	10377	10377		35.201	1.7077	1	392030			10979	9989	6944	6977	11146	11146					0.01834476497083415
FGGPPPKA	8	Unmodified	_FGGPPPKA_					0	0	0		ENST00000484157.5_1_1:155107991-155108063:+|nuORF	ENST00000484157.5_1_1:155107991-155108063:+|nuORF	ENST00000484157.5_1_1:155107991-155108063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	385.7131652832031	2	385.713414	769.412274	-2.1727	-0.00083804	2.0601	0.0007946	-0.11263	-4.3444E-05	385.7141847543232	28.961	0.18822	28.961	28.823	29.012	0					8	4	2	0	0	0	0.55361	1	9672	9672		54.765	26.51	1	295600			10980	9989	6944	6977	11147	11147					0.01834476497083415
FGHSSTSAL	9	Unmodified	_FGHSSTSAL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7192687988281	2	453.719424	905.424296	-0.44949	-0.00020394	-0.23143	-0.00010501	-0.68093	-0.00030895	453.7193088545963	24.436	0.2189	24.436	24.326	24.545	0					10	4	3	0	0	0	0.099922	1	8541	8541		79.451	5.4763	1	1199300			10981	1753	6945	6978	11148	11148					-0.03219951550397582
FGICIIITAAL	11	Unmodified	_FGICIIITAAL_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.8324584960938	2	567.833203	1133.65185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.031	1	51.031	50.531	51.531	0								0	0	0	0.44116	1	16630	16630		27.882	0	1		+		10982	15491	6946	6979	11149	11149					0.09037290333230885
FGIDRPAEL	9	Unmodified	_FGIDRPAEL_					0	0	0		ENST00000592188.1_1_19:19387459-19391209:-|nuORF;ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1	ENST00000592188.1_1_19:19387459-19391209:-|nuORF	ENST00000592188.1_1_19:19387459-19391209:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.27203369140625	2	509.271824	1016.5291	1.1698	0.00059577	-1.1544	-0.00058791	0.015431	7.8585E-06	509.27126684434376	39.354	0.32736	39.354	39.25	39.577	0					20	11	3	0	0	0	0.063171	1	15471	15471		90.601	29.629	1	180360			10983	2389	6947	6980	11150	11150					0.02149169926178729
FGIMKKTSY	9	Unmodified	_FGIMKKTSY_					0	0	0			REV__nc|ENSG00000124568|Q14916-2|SLC17A1	REV__nc|ENSG00000124568|Q14916-2|SLC17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7885131835938	2	537.786253	1073.55795	1.4252	0.00076645	2.619	0.0014085	4.0442	0.0021749	537.7873933056296	26.635	0.24274	26.635	26.557	26.8	0					12	8	2	0	0	0	0.099922	1	8124	8124		79.451	15.244	1	193090	+		10984	14404	6948	6981	11151	11151					0.0241157123098219
FGISSVPTK	9	Unmodified	_FGISSVPTK_					0	0	0		ENST00000552207.1_1_12:56188062-56211500:-|nuORF;ENSG00000205323|ENST00000336133|SARNP	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2631530761719	2	468.263468	934.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.707	1	31.707	31.207	32.207	0								0	0	0	0.16453	1	10205	10205		56.434	10.482	1				10985	7745	6949	6982	11152	11152					0.04250669040243338
FGISSVPTK	9	Unmodified	_FGISSVPTK_					0	0	0		ENST00000552207.1_1_12:56188062-56211500:-|nuORF;ENSG00000205323|ENST00000336133|SARNP	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.26300048828125	2	468.263468	934.512382	0.30068	0.0001408	-0.86432	-0.00040473	-0.56364	-0.00026393	468.263105842634	31.98	0.29106	31.98	31.86	32.151	0					17	7	3	0	0	0	0.25761	1	11726	11726		54.722	7.065	1	357530			10986	7745	6949	6982	11153	11153					0.04250669040243338
FGKKSSAESF	10	Unmodified	_FGKKSSAESF_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.27587890625	2	544.274564	1086.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.992	1	22.992	22.492	23.492	0								0	0	0	0.29806	1	6846	6846		51.193	1.6567	1		+		10987	15210	6950	6983	11154	11154					-0.005231512820046191
FGKRPPPKRL	10	Unmodified	_FGKRPPPKRL_					0	0	0		RBPJ|p.E11K|1|0.16|ENSG00000168214|chr4:26320787-26320787|G/A|missense_variant	RBPJ|p.E11K|1|0.16|ENSG00000168214|chr4:26320787-26320787|G/A|missense_variant	RBPJ|p.E11K|1|0.16|ENSG00000168214|chr4:26320787-26320787|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.2505187988281	3	399.252258	1194.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.274	1	47.274	46.774	47.774	0								0	0	0	0.4201	1	14494	14494		16.007	2.4988	1				10988	12011	6951	6984	11155	11155					0.14536787896122405
FGKVGCKL	8	Unmodified	_FGKVGCKL_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.2462463378906	2	426.244024	850.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.216	1	50.216	49.716	50.716	0								0	0	0	1.7419	1	19834	19834		19.36	4.6959	1				10989	4003	6952	6985	11156	11156					0.04227665204859932
FGLTMAKKI	9	Unmodified	_FGLTMAKKI_					0	0	0		tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.868534	1007.58377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.878	1	56.878	56.378	57.378	0								0	0	0	0.38913	1	16422	16422		14.137	1.1779	1				10990	22686	6953	6986	11157	11157					0.0802846547325089
FGLYFLVVAL	10	Unmodified	_FGLYFLVVAL_					0	0	0		ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.3385620117188	2	571.336436	1140.65832	0.089438	5.1099E-05	3.2089	0.0018333	3.2983	0.0018844	571.3385527986237	36.612	0.093277	36.612	36.522	36.615	0					8	5	2	0	0	0	0.661	1	12390	12390		26.796	2.2769	1	106450			10991	8123	6954	6987	11158	11158					0.09361551556298764
FGMKSKKR	8	Unmodified	_FGMKSKKR_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7366638183594	2	491.286754	980.558955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.747	1	30.747	30.247	31.247	0								0	0	0	1.7419	1	11526	11526		24.203	3.7209	1		+		10992	14082	6955	6988	11159	11159					0.06789830390539464
FGMSRLQEL	9	Unmodified	_FGMSRLQEL_					0	0	0			REV__ENSG00000175520|ENST00000311659|UBQLN3	REV__ENSG00000175520|ENST00000311659|UBQLN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7828369140625	2	540.778959	1079.54336	3.4946	0.0018898	1.2124	0.00065565	4.7071	0.0025455	540.7794408712584	42.293	0.20918	42.293	42.198	42.407	0					10	5	2	0	0	0	0.048471	1	16860	16860		95.815	5.0385	1	240760	+		10993	16619	6956	6989	11160	11160					0.006774990828262162
FGNKLLDAV	9	Unmodified	_FGNKLLDAV_					0	0	0		nc|ENSG00000151287|Q5JUR7-2|TEX30;ENSG00000151287|ENST00000376032|TEX30	nc|ENSG00000151287|Q5JUR7-2|TEX30	nc|ENSG00000151287|Q5JUR7-2|TEX30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7767639160156	2	488.776742	975.538931	0.76606	0.00037443	-0.42985	-0.0002101	0.33621	0.00016433	488.77628070563276	31.375	0.62551	31.375	31.043	31.668	0					20	15	2	0	0	0	0.37197	1	11352	11352		44.117	6.3053	1	328990			10994	4953	6957	6990	11161	11161					0.05018357931567152
FGPGPGSNF	9	Unmodified	_FGPGPGSNF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.2032775878906	2	440.20341	878.392267	-0.28466	-0.00012531	-0.15819	-6.9634E-05	-0.44284	-0.00019494	440.2033305352988	39.505	0.55507	39.505	39.279	39.834	0					75	32	3	0	0	0	0.33044	1	12782	12782		47.657	10.629	1	494670			10995	3273	6958	6991	11162	11162					-0.05179319233513979
FGPGPGSNF	9	Unmodified	_FGPGPGSNF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.2032775878906	2	440.20341	878.392267	-0.3565	-0.00015693	0.055904	2.4609E-05	-0.3006	-0.00013232	440.20341421517855	39.878	0.66986	39.878	39.573	40.243	0					79	26	4	0	0	0	0.034359	2	15237	15104;15237		104.75	46.935	1	3317400			10996	3273	6958	6991	11163;11164	11164					-0.05179319233513979
FGPGPGSNF	9	Unmodified	_FGPGPGSNF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.2030029296875	2	440.20341	878.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.342	1	40.342	39.842	40.842	0								0	0	0	0.28996	1	15375	15375		37.159	1.9584	1				10997	3273	6958	6991	11165	11165					-0.05179319233513979
FGPGPGSNF	9	Unmodified	_FGPGPGSNF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.2036437988281	2	440.20341	878.392267	-1.0427	-0.00045899	0.95486	0.00042033	-0.087824	-3.866E-05	440.203809488322	39.608	0.59295	39.608	39.362	39.955	0					70	33	3	0	0	0	0.055856	1	13356	13356		93.195	45.28	1	807540			10998	3273	6958	6991	11166	11166					-0.05179319233513979
FGPGPGSNF	9	Unmodified	_FGPGPGSNF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2037658691406	2	440.20341	878.392267	-0.57001	-0.00025092	0.59398	0.00026147	0.02397	1.0552E-05	440.20363378171106	39.621	0.42555	39.621	39.418	39.844	0					47	22	3	0	0	0	0.45358	1	14066	14066		37.159	1.5408	1	231150			10999	3273	6958	6991	11167	11167					-0.05179319233513979
FGPKPAAP	8	Unmodified	_FGPKPAAP_					0	0	0			REV__ENST00000367137.3_1_1:205779635-205779698:-|nuORF	REV__ENST00000367137.3_1_1:205779635-205779698:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.72113037109375	2	392.721239	783.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.343	1	22.343	21.843	22.843	0								0	0	0	1.7419	1	6560	6560		37.028	8.7742	1		+		11000	18592	6959	6992	11168	11168					0.02754763014127093
FGPPVPLEAF	10	Unmodified	_FGPPVPLEAF_					0	0	0			REV__ENST00000460261.5_1_1:52822810-52825784:-|nuORF	REV__ENST00000460261.5_1_1:52822810-52825784:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2877807617188	2	537.286943	1072.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.404	1	27.404	26.904	27.904	0								0	0	0	0.33119	1	8960	8960		45.952	3.0877	1		+		11001	12344	6960	6993	11169	11169					0.025955285913596526
FGPWINESPT	10	Unmodified	_FGPWINESPT_					0	0	0			REV__ENST00000472018.5_1_16:89760470-89762097:+|nuORF	REV__ENST00000472018.5_1_16:89760470-89762097:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.2747192382812	2	574.274564	1146.53457	0.064194	3.6865E-05	-0.17423	-0.00010006	-0.11004	-6.3193E-05	574.274312516381	18.845	0.23528	18.845	18.707	18.943	0					11	7	2	0	0	0	0.56063	1	4986	4986		26.693	6.6961	1	106700	+		11002	17021	6961	6994	11170	11170					-0.03283151282016661
FGQLGREL	8	Unmodified	_FGQLGREL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2527770996094	2	460.253434	918.492316	-0.43664	-0.00020096	-0.26338	-0.00012122	-0.70002	-0.00032219	460.2532974941232	34.981	0.3856	34.981	34.894	35.28	0					26	17	3	0	0	0	0.57171	1	11446	11446		52.937	13.684	1	294730			11003	8114	6962	6995	11171	11171					0.029809181002860896
FGQLGREL	8	Unmodified	_FGQLGREL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.25311279296875	2	460.253434	918.492316	-0.68647	-0.00031595	0.10182	4.6863E-05	-0.58465	-0.00026909	460.25345815420127	35.265	0.49764	35.265	35.142	35.64	0					33	13	4	0	0	0	0.2678	1	13198	13198		93.195	30.217	1	1653200			11004	8114	6962	6995	11172	11172					0.029809181002860896
FGQLGREL	8	Unmodified	_FGQLGREL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2530822753906	2	460.253434	918.492316	-0.89096	-0.00041007	0.073207	3.3694E-05	-0.81775	-0.00037637	460.25351015045294	35.041	0.44205	35.041	34.914	35.356	0					41	19	3	0	0	0	0.5535	1	11826	11826		54.776	10.66	1	884620			11005	8114	6962	6995	11173	11173					0.029809181002860896
FGQLGREL	8	Unmodified	_FGQLGREL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2529602050781	2	460.253434	918.492316	-0.059628	-2.7444E-05	-0.059846	-2.7544E-05	-0.11947	-5.4988E-05	460.25338628536394	35.036	0.34467	35.036	34.915	35.26	0					21	10	3	0	0	0	0.28444	1	12437	12437		87.696	13.722	1	362670			11006	8114	6962	6995	11174	11174					0.029809181002860896
FGQSNTATVD	10	Unmodified	_FGQSNTATVD_					0	0	0			REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2393188476562	2	520.238178	1038.4618	1.4623	0.00076076	0.51918	0.0002701	1.9815	0.0010309	520.238318733317	24.217	0.22512	24.217	24.095	24.32	0					13	7	3	0	0	0	0.63224	1	7112	7112		30.318	2.4355	1	151200	+		11007	19845	6963	6996	11175	11175					-0.055889050754103664
FGRVITAQ	8	Unmodified	_FGRVITAQ_					0	0	0		ENSG00000163705|ENST00000450660|FANCD2OS	ENSG00000163705|ENST00000450660|FANCD2OS	ENSG00000163705|ENST00000450660|FANCD2OS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.25628662109375	2	446.255977	890.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.783	1	31.783	31.283	32.283	0								0	0	0	1.7419	1	11606	11606		29.15	4.6455	1				11008	5600	6964	6997	11176	11176					0.04777221962888234
FGSKDSDL	8	Unmodified	_FGSKDSDL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENST00000508625.1_1_4:39911831-39915298:-|nuORF	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.705078125	2	434.705983	867.397412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.386	1	31.386	30.886	31.886	0								0	0	0	1.7419	1	11831	11831		37.159	6.6555	1				11009	3238	6965	6998	11177	11177					-0.04159060161578054
FGTTLGCYVG	10	Unmodified	_FGTTLGCYVG_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.24041748046875	2	509.239135	1016.46372	0.22838	0.0001163	2.2634	0.0011526	2.4918	0.0012689	509.24066349883356	26.142	2.7118	26.142	25.983	28.695	0					99	55	4	0	0	0	0.42631	1	9975	9975		53.351	5.4358	1	6271100	+		11010	14191	6966	6999	11178	11178					-0.043855675911686376
FGVAIEFLNN	10	Unmodified	_FGVAIEFLNN_					0	0	0		tr|U7T5Q7|U7T5Q7_FUSNUCelldivisiontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00049PE=4SV=1	tr|U7T5Q7|U7T5Q7_FUSNUCelldivisiontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00049PE=4SV=1	tr|U7T5Q7|U7T5Q7_FUSNUCelldivisiontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00049PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2943115234375	2	562.292756	1122.57096	0.46177	0.00025965	3.1611	0.0017775	3.6229	0.0020371	562.2944167104716	37.171	0.63322	37.171	36.966	37.599	0					39	18	3	0	0	0	0.46215	1	14065	14065		49.442	8.0149	1	183440			11011	23016	6967	7000	11179	11179					0.014577256146822037
FGVCFLHF	8	Carbamidomethyl (C)	_FGVC(Carbamidomethyl (C))FLHF_	FGVC(1)FLHF		FGVC(44)FLHF		0	1	0			REV__ENST00000442655.2_1_4:9032265-9032511:+|nuORF	REV__ENST00000442655.2_1_4:9032265-9032511:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.7460327148438	2	513.746931	1025.47931	-1.6354	-0.00084017	-0.010135	-5.2067E-06	-1.6455	-0.00084537	513.7468988216218	30.761	0.22361	30.761	30.68	30.903	0					11	6	3	0	0	0	0.63381	1	10519	10519		43.626	8.0078	1	242610	+		11012	19256	6968	7001	11180	11180	689				-0.03241236283474791
FGVGFVSVEK	10	Unmodified	_FGVGFVSVEK_					0	0	0			REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.8623046875	3	356.862325	1067.56515	0.48725	0.00017388	-0.58384	-0.00020835	-0.096587	-3.4468E-05	356.86208961848973	30.523	0.97781	30.523	30.394	31.372	0					49	23	4	0	0	0	0.61187	1	10984	10984		30.569	0	1	8752900	+		11013	22013	6969	7002	11181	11181					0.034066271030496864
FGVMCDARG	9	Unmodified	_FGVMCDARG_					0	0	0			REV__ENST00000511331.5_1_5:180673547-180673826:+|nuORF	REV__ENST00000511331.5_1_5:180673547-180673826:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.209716796875	2	478.209855	954.405157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.058	1	17.058	16.558	17.558	0								0	0	0	0.22106	1	4175	4175		47.916	1.9434	1		+		11014	19877	6970	7003	11182	11182					-0.07386947437294111
FGVPSAWKK	9	Unmodified	_FGVPSAWKK_					0	0	0			REV__ENST00000513449.6_2_4:8465778-8469740:+|nuORF	REV__ENST00000513449.6_2_4:8465778-8469740:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2884216308594	2	510.287277	1018.56	-0.0098581	-5.0305E-06	2.9329	0.0014966	2.923	0.0014916	510.28893751579255	13.817	0.24337	13.817	13.733	13.976	0					11	6	3	0	0	0	0.35021	1	3235	3235		45.972	3.5761	1	463390	+		11015	19891	6971	7004	11183	11183					0.051463680310803284
FGVSCIFFTL	10	Unmodified	_FGVSCIFFTL_					0	0	0			REV__HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant	REV__HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2902221679688	2	567.288628	1132.5627	3.4711	0.0019691	-1.6422	-0.00093159	1.8289	0.0010375	567.2874470355711	39.009	0.6763	39.009	38.61	39.287	0					38	14	4	0	0	0	0.30737	1	15372	15372		66.429	5.4573	1	465660	+		11016	13371	6972	7005	11184	11184					0.0017245537374037667
FGVSSTPLQ	9	Unmodified	_FGVSSTPLQ_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2432861328125	2	468.245275	934.475997	0.30848	0.00014444	-3.6572	-0.0017125	-3.3488	-0.001568	468.24347742662155	13.747	0.12626	13.747	13.705	13.831	0					5	3	2	0	0	0	0.30951	1	3213	3213		49.442	8.6634	1	85127			11017	7117	6973	7006	11185	11185					0.006137921435311
FGWTCYLK	8	Unmodified	_FGWTCYLK_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2474060058594	2	509.246763	1016.47897	1.1684	0.000595	0.42454	0.00021619	1.5929	0.00081119	509.2469062068945	27.967	0.8311	27.967	27.601	28.432	0					50	17	4	0	0	0	0.3961	1	10153	10153		71.296	12.514	1	1060100			11018	9019	6974	7007	11186	11186					-0.02860656003326767
FGYPVYSYVD	10	Unmodified	_FGYPVYSYVD_					0	0	0		EOGT|p.C97Y|1|0.3|ENSG00000163378|chr3:69008449-69008449|C/T|missense_variant	EOGT|p.C97Y|1|0.3|ENSG00000163378|chr3:69008449-69008449|C/T|missense_variant	EOGT|p.C97Y|1|0.3|ENSG00000163378|chr3:69008449-69008449|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.2807006835938	2	605.276772	1208.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.687	1	44.687	44.187	45.187	0								0	0	0	0.40862	1	17371	17371		27.882	4.3595	1				11019	11106	6975	7008	11187	11187					-0.05693686859103764
FHCPSPKK	8	Unmodified	_FHCPSPKK_					0	0	0		ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2425842285156	2	472.244555	942.474557	-0.74201	-0.00035041	-2.8097	-0.0013269	-3.5517	-0.0016773	472.24317830477025	12.133	0.09213	12.133	12.046	12.138	0					4	2	2	0	0	0	0.5676	1	2648	2648		53.351	3.9099	1	488620			11020	3429	6976	7009	11188	11188					0.0010187957377638668
FHCTLTEPG	9	Carbamidomethyl (C)	_FHC(Carbamidomethyl (C))TLTEPG_	FHC(1)TLTEPG		FHC(89)TLTEPG		0	1	0			REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.237548828125	2	531.239667	1060.46478	-0.14641	-7.7779E-05	-3.4376	-0.0018262	-3.584	-0.001904	531.2377698487236	20.157	0.16327	20.157	20.085	20.248	0					8	5	2	0	0	0	0.068692	1	5592	5592		88.643	33.139	1	106250	+		11021	18576	6977	7010	11189	11189	659				-0.06303353222256192
FHCTLTEPG	9	Carbamidomethyl (C)	_FHC(Carbamidomethyl (C))TLTEPG_	FHC(1)TLTEPG		FHC(74)TLTEPG		0	1	0			REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2380981445312	2	531.239667	1060.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.248	1	20.248	19.748	20.748	0								0	0	0	0.09203	1	5657	5657		73.975	24.533	1		+		11022	18576	6977	7010	11190	11190	659				-0.06303353222256192
FHETIAKI	8	Unmodified	_FHETIAKI_					0	0	0			REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7696228027344	2	479.77146	957.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.002	1	30.002	29.502	30.502	0								0	0	0	1.7419	1	9815	9815		60.972	0.85368	1		+		11023	19710	6978	7011	11191	11191					0.047903752771503605
FHFDVSGMTS	10	Unmodified	_FHFDVSGMTS_					0	0	0			REV__ENST00000497424.5_1_20:3903962-3904037:+|nuORF	REV__ENST00000497424.5_1_20:3903962-3904037:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.244384765625	2	564.244949	1126.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.92	1	19.92	19.42	20.42	0								0	0	0	0.4201	1	5504	5504		16.473	0	1		+		11024	19784	6979	7012	11192	11192					-0.08283370567824022
FHFMLVDLS	9	Unmodified	_FHFMLVDLS_					0	0	0		nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.776123046875	2	554.778428	1107.5423	0.14212	7.8846E-05	-1.7513	-0.00097158	-1.6092	-0.00089274	554.7774088803702	29.78	0.37011	29.78	29.592	29.962	0					21	14	2	0	0	0	0.49003	1	9712	9712		33.516	3.0119	1	124390			11025	11708	6980	7013	11193	11193					-0.007167152860802162
FHHLGKRI	8	Unmodified	_FHHLGKRI_					0	0	0		ENSG00000152595|ENST00000361056|MEPE;nc|ENSG00000152595|Q9NQ76-2|MEPE	ENSG00000152595|ENST00000361056|MEPE	ENSG00000152595|ENST00000361056|MEPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5339050292969	3	336.534766	1006.58247	-1.9127	-0.0006437	0.32626	0.0001098	-1.5865	-0.0005339	336.53485363278764	31.361	1.1091	31.361	31.059	32.168	0					52	31	2	0	0	0	0.78999	1	10936	10936		10.866	10.866	1	120680			11026	5020	6981	7014	11194	11194					0.07944012219365959
FHHLGKRI	8	Unmodified	_FHHLGKRI_					0	0	0		ENSG00000152595|ENST00000361056|MEPE;nc|ENSG00000152595|Q9NQ76-2|MEPE	ENSG00000152595|ENST00000361056|MEPE	ENSG00000152595|ENST00000361056|MEPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5343322753906	3	336.534766	1006.58247	-1.9123	-0.00064357	0.27522	9.2621E-05	-1.6371	-0.00055095	336.5348662131169	33.605	1.3823	33.605	33.057	34.44	0					64	41	2	0	0	0	0.78999	1	11817	11817		10.866	10.866	1	142590			11027	5020	6981	7014	11195	11195					0.07944012219365959
FHKIIWML	8	Unmodified	_FHKIIWML_					0	0	0			REV__ENST00000518667.1_1_8:66643803-66660021:-|nuORF	REV__ENST00000518667.1_1_8:66643803-66660021:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.3112182617188	2	544.309698	1086.60484	0.32467	0.00017672	2.6968	0.0014679	3.0214	0.0016446	544.3113437109736	37.486	0.30283	37.486	37.348	37.651	0					16	9	2	0	0	0	0.68432	1	14656	14656		33.516	0.70317	1	139660	+		11028	19931	6982	7015	11196	11196					0.06500475572761388
FHKTGQEIYKQ	11	Unmodified	_FHKTGQEIYKQ_					0	0	0		ENSG00000154710|ENST00000284957|RABGEF1;nc|ENSG00000154710|Q9UJ41-4|RABGEF1;nc|ENSG00000154710|Q9UJ41-3|RABGEF1	ENSG00000154710|ENST00000284957|RABGEF1	ENSG00000154710|ENST00000284957|RABGEF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	689.860595703125	2	689.859326	1377.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.668	1	33.668	33.168	34.168	0								0	0	0	0.45674	1	10967	10967		12.207	0	1				11029	5097	6983	7016	11197	11197					0.030355450005799867
FHKVRRHK	8	Unmodified	_FHKVRRHK_					0	0	0			REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8	REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.3360595703125	2	554.335959	1106.65736	-0.022366	-1.2398E-05	0.33473	0.00018555	0.31237	0.00017316	554.3360517954039	18.284	0.11966	18.284	18.224	18.344	0					6	2	3	0	0	0	0.5676	1	5598	5598		52.299	52.299	1	412440	+		11030	14932	6984	7017	11198	11198					0.10830194750587907
FHKWEGLLP	9	Unmodified	_FHKWEGLLP_					0	0	0			REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.8040771484375	2	563.805834	1125.59712	-1.0396	-0.00058614	-2.1207	-0.0011957	-3.1603	-0.0017818	563.8044973881938	28.185	0.50369	28.185	28.095	28.599	0					18	12	2	0	0	0	0.37197	1	9311	9311		44.117	14.967	1	233750	+		11031	13502	6985	7018	11199	11199					0.03934039576847681
FHLANKTKL	9	Unmodified	_FHLANKTKL_					0	0	0		tr|U7T5C6|U7T5C6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00016PE=4SV=1	tr|U7T5C6|U7T5C6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00016PE=4SV=1	tr|U7T5C6|U7T5C6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00016PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.318115234375	2	536.319109	1070.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.311	1	19.311	18.811	19.811	0								0	0	0	0.35377	1	5220	5220		11.511	0	1				11032	23008	6986	7019	11200	11200					0.09117728468186215
FHLIHLMF	8	Unmodified	_FHLIHLMF_					0	0	0		nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF;nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.28759765625	2	529.286223	1056.55789	3.4521	0.0018272	-0.91492	-0.00048425	2.5372	0.0013429	529.2858587531997	36.603	0.51803	36.603	36.445	36.963	0					29	10	4	0	0	0	0.63381	1	14227	14227		43.626	2.1994	1	1555900			11033	2696	6987	7020	11201	11201					0.031876160216143035
FHLKFQLA	8	Unmodified	_FHLKFQLA_					0	0	0		EYS|p.F2463Rfs*16|1|0.05|ENSG00000188107|chr6:63806214-63806215|-/AAGACCT|frameshift_variant;ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	EYS|p.F2463Rfs*16|1|0.05|ENSG00000188107|chr6:63806214-63806215|-/AAGACCT|frameshift_variant	EYS|p.F2463Rfs*16|1|0.05|ENSG00000188107|chr6:63806214-63806215|-/AAGACCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2899169921875	2	502.28982	1002.56509	-0.043931	-2.2066E-05	-0.33897	-0.00017026	-0.3829	-0.00019233	502.2896396316204	21.436	0.085106	21.436	21.377	21.462	0					6	3	2	0	0	0	0.61433	1	5902	5902		46.766	0.81448	1	90185			11034	7236	6988	7021	11202	11202					0.0639067189368916
FHRPNEITY	9	Unmodified	_FHRPNEITY_					0	0	0			REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7938232421875	2	588.793455	1175.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.243	1	44.243	43.743	44.743	0								0	0	0	0.27939	1	17727	17727		39.253	0.44669	1		+		11035	17316	6989	7022	11203	11203					-0.008406402965420057
FHSKESIVA	9	Unmodified	_FHSKESIVA_					0	0	0		MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1;MIS18BP1|p.N380Ifs*3|5|0.35|ENSG00000129534|chr14:45242038-45242038|T/-|frameshift_variant;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2715759277344	2	509.271824	1016.5291	0.98285	0.00050054	-3.9766	-0.0020252	-2.9938	-0.0015246	509.26998873528913	13.244	0.14847	13.244	13.137	13.286	0					11	8	2	0	0	0	0.53083	1	2589	2589		29.15	1.2673	1	41545			11036	3602	6990	7023	11204	11204					0.021491699262014663
FHSVLQMVLE	10	Unmodified	_FHSVLQMVLE_					0	0	0		DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant;DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant;nc|ENSG00000008226|Q9Y238-2|DLEC1;ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant;ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.8160400390625	2	601.815541	1201.61653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.865	1	10.865	10.365	11.365	0								0	0	0	0.4201	1	2113	2113		21.96	5.4867	1				11037	797;1015	6991	7024	11205	11205					0.023786278054330978
FHTEAARKE	9	Unmodified	_FHTEAARKE_					0	0	0			REV__ENSG00000110871|ENST00000288532|COQ5	REV__ENSG00000110871|ENST00000288532|COQ5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7764282226562	2	544.777805	1087.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.597	1	12.597	12.097	13.097	0								0	0	0	0.38123	1	2686	2686		16.473	0.83134	1		+		11038	13949	6992	7025	11206	11206					0.0007878666938267997
FHTSGGGMWPF	11	Oxidation (M)	_FHTSGGGM(Oxidation (M))WPF_		FHTSGGGM(1)WPF		FHTSGGGM(41)WPF	0	0	1			REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	620.2681884765625	2	620.266216	1238.51788	3.0969	0.0019209	-0.77229	-0.00047903	2.3246	0.0014418	620.2659675928112	41.204	0.26609	41.204	41.091	41.357	0					16	6	3	0	0	0	0.5473	1	16388	16388		40.778	6.6056	1	192960	+		11039	15509	6993	7026	11207	11207		597			-0.09183975439600545
FHVKSHANK	9	Unmodified	_FHVKSHANK_					0	0	0			REV__nc|ENSG00000170234|Q96N64-2|PWWP2A	REV__nc|ENSG00000170234|Q96N64-2|PWWP2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2898559570312	2	534.290882	1066.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.815	1	23.815	23.315	24.315	0								0	0	0	0.3304	1	7330	7330		29.15	6.1128	1		+		11040	21114	6994	7027	11208	11208					0.03659100631512047
FHVTYNVA	8	Unmodified	_FHVTYNVA_					0	0	0			REV__PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant	REV__PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7405090332031	2	475.74016	949.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.864	1	13.864	13.364	14.364	0								0	0	0	1.7419	1	2910	2910		8.8223	0.59103	1		+		11041	15690	6995	7028	11209	11209					-0.010987707910544486
FIALIGKGTIH	11	Unmodified	_FIALIGKGTIH_					0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.354248046875	2	585.355691	1168.69683	-0.29076	-0.0001702	-3.017	-0.001766	-3.3078	-0.0019362	585.3542605770366	23.909	0.088333	23.909	23.854	23.942	0					6	3	2	0	0	0	0.68382	1	7254	7254		29.17	2.4771	1	38479	+		11042	15881	6996	7029	11210	11210					0.11922857190825198
FIAPTGHSL	9	Unmodified	_FIAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7555236816406	2	471.75581	941.497067	0.19452	9.1765E-05	-0.56826	-0.00026808	-0.37375	-0.00017632	471.7555105729486	33.264	0.38952	33.264	33.119	33.508	0					24	10	3	0	0	0	0.13519	1	12259	12259		71.296	15.791	1	1958600			11043	3411	6997	7030	11211	11211					0.023978022430469537
FIAPTGHSL	9	Unmodified	_FIAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.75531005859375	2	471.75581	941.497067	-0.5956	-0.00028098	0.060938	2.8748E-05	-0.53466	-0.00025223	471.7558527387979	33.256	0.35669	33.256	33.141	33.497	0					31	9	5	0	0	0	0.25109	1	12250	12250		55.504	3.205	1	4080200			11044	3411	6997	7030	11212	11212					0.023978022430469537
FIAPTGHSL	9	Unmodified	_FIAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7557067871094	2	471.75581	941.497067	0.58902	0.00027787	-0.93706	-0.00044206	-0.34804	-0.00016419	471.75529047558854	33.229	0.52373	33.229	33.094	33.618	0					32	12	4	0	0	0	0.018419	1	12689	12689		124.59	33.818	1	6014400			11045	3411	6997	7030	11213	11213					0.023978022430469537
FIAPTGHSL	9	Unmodified	_FIAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.75543212890625	2	471.75581	941.497067	-0.77564	-0.00036591	-0.5359	-0.00025281	-1.3115	-0.00061873	471.75584916032744	33.235	0.17191	33.235	33.124	33.296	0					8	4	2	0	0	0	0.43426	1	12723	12723		38.806	3.6054	1	76601			11046	3411	6997	7030	11214	11214					0.023978022430469537
FIAQNVASL	9	Unmodified	_FIAQNVASL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.76904296875	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.825	1	44.825	44.325	45.325	0								0	0	0	0.27939	1	17957	17957		39.253	11.371	1				11047	3506	6998	7031	11215	11215					0.04098071414523474
FIAREPLGG	9	Unmodified	_FIAREPLGG_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.26715087890625	2	480.269084	958.523616	-2.9249	-0.0014047	-1.3729	-0.00065935	-4.2977	-0.0020641	480.26824001204	27.255	0.26151	27.255	27.152	27.414	0					9	6	2	0	0	0	0.20551	1	8893	8893		60.972	1.0412	1	100760			11048	11598	6999	7032	11216	11216					0.04269491134380132
FIARGDADAR	10	Unmodified	_FIARGDADAR_					0	0	0			REV__ENST00000530961.5_1_11:66372641-66373323:+|nuORF	REV__ENST00000530961.5_1_11:66372641-66373323:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.281982421875	2	546.283254	1090.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.507	1	46.507	46.007	47.007	0								0	0	0	0.34115	1	17870	17870		44.377	7.2181	1		+		11049	16540	7000	7033	11217	11217					0.010301890436494432
FIAWLVGIA	9	Unmodified	_FIAWLVGIA_					0	0	0			REV__LHFPL3|p.G78Afs*25|1|0.41|ENSG00000187416|chr7:104329051-104329051|G/-|frameshift_variant	REV__LHFPL3|p.G78Afs*25|1|0.41|ENSG00000187416|chr7:104329051-104329051|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.293701171875	2	495.294571	988.574589	-0.65978	-0.00032678	-0.82876	-0.00041048	-1.4885	-0.00073727	495.29422760425155	25.907	0.16866	25.907	25.849	26.017	0					8	3	3	0	0	0	0.12946	1	9099	9099		72.62	4.1352	1	302610	+		11050	15644	7001	7034	11218	11218					0.07984440179234298
FICPCNKL	8	Unmodified	_FICPCNKL_					0	0	0		nc|ENSG00000132639|P60880-2|SNAP25	nc|ENSG00000132639|P60880-2|SNAP25	nc|ENSG00000132639|P60880-2|SNAP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.23492431640625	2	469.235341	936.45613	0.41437	0.00019444	-1.7705	-0.0008308	-1.3562	-0.00063636	469.23473189187655	32.615	0.14259	32.615	32.555	32.697	0					5	3	2	0	0	0	0.4723	1	11994	11994		62.978	8.2021	1	50815			11051	11528	7002	7035	11219	11219					-0.014639983924325861
FIDASRLVY	9	Unmodified	_FIDASRLVY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2944946289062	2	542.295299	1082.57605	2.0424	0.0011076	-1.8474	-0.0010019	0.19496	0.00010572	542.29421326663	44.295	0.15207	44.295	44.197	44.349	0					12	8	2	0	0	0	0.1424	1	17245	17245		69.628	23.655	1	127320			11052	1383;1209	7003	7036	11220	11220					0.038060294773458736
FIDASRLVY	9	Unmodified	_FIDASRLVY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2957153320312	2	542.295299	1082.57605	2.0354	0.0011038	-1.1113	-0.00060263	0.92411	0.00050114	542.2946016746499	44.226	0.26845	44.226	44.121	44.389	0					22	11	3	0	0	0	0.035062	1	17712	17712		104.06	45.275	1	188380			11053	1383;1209	7003	7036	11221	11221					0.038060294773458736
FIDGVVARN	9	Unmodified	_FIDGVVARN_					0	0	0		DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant;DIS3L2|p.L768Pfs*56|1|0.27|ENSG00000144535|chr2:232334638-232334639|-/C|frameshift_variant;ENSG00000144535|ENST00000325385|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;DIS3L2|p.K227Ifs*29|1|0.06|ENSG00000144535|chr2:232130692-232130693|GG/-|frameshift_variant;DIS3L2|p.S225Rfs*113|1|0.06|ENSG00000144535|chr2:232130690-232130690|T/-|frameshift_variant;nc|ENSG00000144535|Q8IYB7-5|DIS3L2	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7733459472656	2	495.771991	989.529429	0.95314	0.00047254	1.3737	0.00068106	2.3269	0.0011536	495.77285287230615	22.183	0.41771	22.183	22.02	22.438	0					23	8	4	0	0	0	0.20551	1	7322	7322		60.972	2.19	1	1521100			11054	793	7004	7037	11222	11222					0.034245896460333825
FIDLNEEK	8	Unmodified	_FIDLNEEK_					0	0	0			REV__tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1	REV__tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.254638671875	2	504.25584	1006.49713	-2.0154	-0.0010163	-1.6545	-0.00083428	-3.6699	-0.0018506	504.2550978254939	16.513	0.64038	16.513	16.43	17.071	0					45	18	5	0	0	0	0.24681	1	3920	3920		107.01	7.6326	1	14416000	+		11055	21846	7005	7038	11223	11223					-0.005862425476038879
FIDRRQIP	8	Unmodified	_FIDRRQIP_					0	0	0			REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8004760742188	2	522.801083	1043.58761	-1.2957	-0.0006774	0.86187	0.00045059	-0.43384	-0.00022681	522.8014501552327	33.289	0.40988	33.289	33.083	33.493	0					36	12	4	0	0	0	0.64096	1	11604	11604		42.474	0.078325	1	1427500	+		11056	17508	7006	7039	11224	11224					0.0675627129132863
FIDSKKNNL	9	Unmodified	_FIDSKKNNL_					0	0	0		tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7985229492188	2	539.798206	1077.58186	0.93598	0.00050524	-0.40479	-0.0002185	0.53119	0.00028674	539.7979723155535	35.545	0.32601	35.545	35.454	35.78	0					43	16	4	0	0	0	0.44593	1	11628	11628		37.812	0.65241	1	688320			11057	22878	7007	7040	11225	11225					0.0461712798901317
FIEDPTPA	8	Unmodified	_FIEDPTPA_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;ENST00000440217.5_1_1:55136488-55151982:+|nuORF;nc|ENSG00000184313|Q68CQ1-8|MROH7;nc|ENSG00000184313|Q68CQ1-2|MROH7;MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.2167663574219	2	445.218726	888.422899	-2.7722	-0.0012342	-1.6144	-0.00071875	-4.3866	-0.001953	445.2179858062104	31.88	0.3826	31.88	31.694	32.076	0					19	11	2	0	0	0	0.68754	1	10987	10987		35.201	1.6851	1	81274			11058	7007	7008	7041	11226	11226					-0.02577585639141944
FIEVETQK	8	Unmodified	_FIEVETQK_					0	0	0		ENST00000480575.1_1_X:100603377-100603652:-|nuORF;ENST00000419283.1_1_2:162933923-162934139:-|nuORF;ENSG00000126953|ENST00000372902|TIMM8A	ENST00000480575.1_1_X:100603377-100603652:-|nuORF	ENST00000480575.1_1_X:100603377-100603652:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2640380859375	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.534	1	11.534	11.034	12.034	0								0	0	0	1.7419	1	2385	2385		35.618	0.41757	1				11059	3495	7009	7042	11227	11227					0.021303478320419345
FIFLLLFF	8	Unmodified	_FIFLLLFF_					0	0	0			REV__ENST00000394945.5_1_5:136314095-136314182:-|nuORF	REV__ENST00000394945.5_1_5:136314095-136314182:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.3177490234375	2	530.317515	1058.62048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.715	1	14.715	14.215	15.215	0								0	0	0	1.7419	1	3079	3079		16.705	0	1		+		11060	18871	7010	7043	11228	11228					0.09351085361481637
FIGAYSWI	8	Unmodified	_FIGAYSWI_					0	0	0		tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7445983886719	2	478.747453	955.480354	-1.4405	-0.00068961	-2.5023	-0.001198	-3.9428	-0.0018876	478.7459237597792	39.005	0.15215	39.005	38.956	39.108	0					11	8	2	0	0	0	0.67475	1	13123	13123		37.028	3.5129	1	56329			11061	22706	7011	7044	11229	11229					0.0008330135708547459
FIGKSFPLK	9	Unmodified	_FIGKSFPLK_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.8130493164062	2	518.813128	1035.6117	1.6012	0.00083074	-1.1137	-0.00057781	0.48751	0.00025293	518.8123781484286	35.184	0.26402	35.184	35.064	35.328	0					16	7	3	0	0	0	0.54267	1	13627	13627		27.882	1.0861	1	396630	+		11062	14514	7012	7045	11230	11230					0.09532111724979586
FIGLISTKI	9	Unmodified	_FIGLISTKI_					0	0	0			REV__tr|U7SWI1|U7SWI1_FUSNUCationeffluxproteincytoplasmicdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01051PE=4SV=1	REV__tr|U7SWI1|U7SWI1_FUSNUCationeffluxproteincytoplasmicdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01051PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.3130798339844	2	496.312961	990.611368	0.74547	0.00036999	-0.036851	-1.829E-05	0.70862	0.0003517	496.31297991086956	46.76	0.21519	46.76	46.681	46.897	0					23	12	3	0	0	0	0.25716	1	17923	17923		54.776	5.3348	1	135350	+		11063	22005	7013	7046	11231	11231					0.11568692005130288
FIGLISTKI	9	Unmodified	_FIGLISTKI_					0	0	0			REV__tr|U7SWI1|U7SWI1_FUSNUCationeffluxproteincytoplasmicdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01051PE=4SV=1	REV__tr|U7SWI1|U7SWI1_FUSNUCationeffluxproteincytoplasmicdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01051PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.31256103515625	2	496.312961	990.611368	0.96713	0.00048	-0.90978	-0.00045153	0.057358	2.8467E-05	496.3123219534532	46.711	0.28589	46.711	46.637	46.923	0					26	13	3	0	0	0	0.30951	1	18681	18681		49.442	7.0454	1	440110	+		11064	22005	7013	7046	11232	11232					0.11568692005130288
FIHCIRIKK	9	Unmodified	_FIHCIRIKK_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.3539428710938	2	579.352428	1156.6903	3.8359	0.0022223	-0.73566	-0.00042621	3.1002	0.0017961	579.352086965109	17.619	0.066809	17.619	17.578	17.645	0					4	2	2	0	0	0	0.45358	1	4455	4455		37.159	3.2375	1	28482	+		11065	21032	7014	7047	11233	11233					0.11822640758396119
FIIDSSRSV	9	Unmodified	_FIIDSSRSV_					0	0	0		MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3;nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2767333984375	2	512.277106	1022.53966	1.2542	0.00064248	-1.4302	-0.00073266	-0.17603	-9.0176E-05	512.2764543411913	35.96	0.26659	35.96	35.853	36.12	0					22	8	4	0	0	0	0.054723	1	13964	13964		93.598	32.626	1	2558000			11066	3798;3759	7015	7048	11234	11234					0.0292915258062294
FIIDSSRSV	9	Unmodified	_FIIDSSRSV_					0	0	0		MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3;nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2767944335938	2	512.277106	1022.53966	0.055382	2.8371E-05	-0.94623	-0.00048473	-0.89084	-0.00045636	512.2765775445663	35.89	0.31407	35.89	35.784	36.098	0					14	6	3	0	0	0	0.11411	1	13887	13887		76.17	19.736	1	941520			11067	3798;3759	7015	7048	11235	11235					0.0292915258062294
FIIDSSRSV	9	Unmodified	_FIIDSSRSV_					0	0	0		MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3;nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2769165039062	2	512.277106	1022.53966	1.4226	0.00072877	-1.4874	-0.00076194	-0.06476	-3.3175E-05	512.2764814631449	35.922	0.36461	35.922	35.768	36.132	0					17	7	4	0	0	0	0.011389	1	13899	13899		138.06	22.568	1	2231100			11068	3798;3759	7015	7048	11236	11236					0.0292915258062294
FIIDSSRSV	9	Unmodified	_FIIDSSRSV_					0	0	0		MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3;nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2771606445312	2	512.277106	1022.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.886	1	35.886	35.386	36.386	0								0	0	0	0.015103	1	13896	13896		104.01	21.263	1				11069	3798;3759	7015	7048	11237	11237					0.0292915258062294
FIIETLKM	8	Unmodified	_FIIETLKM_					0	0	0			REV__POLR3A|p.K348Nfs*33|1|0.16|ENSG00000148606|chr10:78021864-78021864|T/-|frameshift_variant	REV__POLR3A|p.K348Nfs*33|1|0.16|ENSG00000148606|chr10:78021864-78021864|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7865295410156	2	497.785721	993.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.017	1	47.017	46.517	47.517	0								0	0	0	1.7419	1	18792	18792		37.159	1.5408	1		+		11070	15393	7016	7049	11238	11238					0.05985356862061053
FIINNSLEK	9	Unmodified	_FIINNSLEK_					0	0	0		nc|ENSG00000164485|Q969J5-2|IL22RA2;ENSG00000164485|ENST00000296980|IL22RA2	nc|ENSG00000164485|Q969J5-2|IL22RA2	nc|ENSG00000164485|Q969J5-2|IL22RA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3018798828125	2	539.300581	1076.58661	1.9438	0.0010483	-0.64826	-0.00034961	1.2956	0.0006987	539.3006758797998	40.733	0.34101	40.733	40.617	40.958	0					18	9	3	0	0	0	0.42902	1	16037	16037		39.253	5.0803	1	156200			11071	5696	7017	7050	11239	11239					0.05138012131760661
FIIPQLLL	8	Unmodified	_FIIPQLLL_					0	0	0		ENST00000282561.3_1_6:121769761-121769857:+|nuORF	ENST00000282561.3_1_6:121769761-121769857:+|nuORF	ENST00000282561.3_1_6:121769761-121769857:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.8098449707031	2	478.812596	955.61064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.84	1	26.84	26.34	27.34	0								0	0	0	1.7419	1	8701	8701		35.201	5.3592	1				11072	8418	7018	7051	11240	11240					0.13105897356092555
FIISRTQAL	9	Unmodified	_FIISRTQAL_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	nc|ENSG00000083312|Q92973-2|TNPO1	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8114013671875	2	524.811116	1047.60768	0.11558	6.066E-05	0.36576	0.00019195	0.48134	0.00025261	524.811388486264	37.809	0.13729	37.809	37.708	37.846	0					10	4	3	0	0	0	0.22837	1	14812	14812		58.23	3.4536	1	187880			11073	1694	7019	7052	11241	11241					0.08578022231267823
FIKDFNIK	8	Unmodified	_FIKDFNIK_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.793701171875	2	512.794935	1023.57532	-0.46146	-0.00023663	0.55683	0.00028554	0.095365	4.8903E-05	512.7951517084573	25.405	0.65166	25.405	25.222	25.874	0					28	11	4	0	0	0	0.68432	1	9156	9156		35.618	3.6634	1	2725200			11074	22812	7020	7053	11242	11242					0.0644723482827203
FIKTFVKGF	9	Unmodified	_FIKTFVKGF_					0	0	0		tr|U7T3C0|U7T3C0_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00346PE=4SV=1	tr|U7T3C0|U7T3C0_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00346PE=4SV=1	tr|U7T3C0|U7T3C0_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00346PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8184814453125	2	543.820953	1085.62735	-1.4919	-0.00081133	-1.1651	-0.00063362	-2.657	-0.0014449	543.8201103999362	32.463	0.64513	32.463	32.16	32.805	0					35	19	2	0	0	0	0.37197	1	11232	11232		44.117	12.162	1	95556			11075	22961	7021	7054	11243	11243					0.08796398242020587
FILFKRPW	8	Unmodified	_FILFKRPW_					0	0	0		MIDN|p.R261Afs*13|1|0.32|ENSG00000167470|chr19:1254981-1254981|C/-|frameshift_variant;ENSG00000167470|ENST00000682408|MIDN	MIDN|p.R261Afs*13|1|0.32|ENSG00000167470|chr19:1254981-1254981|C/-|frameshift_variant	MIDN|p.R261Afs*13|1|0.32|ENSG00000167470|chr19:1254981-1254981|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.8323364257812	2	553.829112	1105.64367	1.8198	0.0010079	1.6849	0.00093314	3.5047	0.001941	554.3313295695108	51.214	0.2295	51.214	51.07	51.299	0					17	13	2	0	0	0	0.7914	1	20071	20071		14.664	0.88877	1	34948			11076	5991	7022	7055	11244	11244					0.09507524198784267
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.6519165039062	3	547.317262	1638.92996	1.6711	0.0009146	-0.13019	-7.1253E-05	1.5409	0.00084334	547.6513885758046	34.653	0.35471	34.653	34.468	34.823	0					43	15	4	0	0	0	0.82532	1	11350	11350		9.6461	9.2747	1	236160	+		11077	18130	7023	7056	11245	11245					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.6520385742188	3	547.317262	1638.92996	1.854	0.0010147	-0.5573	-0.00030502	1.2967	0.00070972	547.6511059767153	34.919	0.35355	34.919	34.772	35.126	0					17	9	3	0	0	0	0.88894	1	13046	13046		1.523	1.1516	1	256590	+		11078	18130	7023	7056	11246	11246					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.6515502929688	3	547.317262	1638.92996	0.44037	0.00024102	0.86468	0.00047326	1.305	0.00071428	547.6517557678698	34.699	0.21946	34.699	34.635	34.854	0					23	10	3	0	0	0	0.80169	1	11718	11718		14.694	14.353	1	187670	+		11079	18130	7023	7056	11247	11247					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.3181762695312	3	547.317262	1638.92996	1.9489	0.0010667	-0.11976	-6.5544E-05	1.8292	0.0010011	547.6516325509175	34.731	0.36169	34.731	34.503	34.864	0					19	11	2	0	0	0	0.86597	1	12301	12301		3.4087	3.0373	1	113890	+		11080	18130	7023	7056	11248	11248					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.6524047851562	3	547.317262	1638.92996	1.1432	0.00062569	0.0059888	3.2778E-06	1.1492	0.00062896	547.6515337595575	34.68	0.50021	34.68	34.462	34.963	0					38	16	4	0	0	0	0.84089	1	12279	12279		6.3209	6.3209	1	340670	+		11081	18130	7023	7056	11249	11249					0.13604958701102987
FILGSHLTY	9	Unmodified	_FILGSHLTY_					0	0	0		ENSG00000180479|ENST00000451802|ZNF571	ENSG00000180479|ENST00000451802|ZNF571	ENSG00000180479|ENST00000451802|ZNF571	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2852783203125	2	525.784567	1049.55458	0.52195	0.00027443	-2.6179	-0.0013765	-2.0959	-0.001102	525.7831799500472	34.738	0.58624	34.738	34.544	35.131	0					42	26	2	0	0	0	0.25109	1	11827	11827		55.504	22.692	1	73537			11082	6805	7024	7057	11250	11250					0.031786444485987886
FILHGLLM	8	Unmodified	_FILHGLLM_					0	0	0			REV__PIGC|p.D165*|1|0.4|ENSG00000135845|chr1:172442130-172442131|-/A|frameshift_variant	REV__PIGC|p.D165*|1|0.4|ENSG00000135845|chr1:172442130-172442131|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2733459472656	2	472.275324	942.536095	-2.43	-0.0011476	-1.3765	-0.00065008	-3.8065	-0.0017977	472.2746334469378	33.164	0.23498	33.164	33.057	33.292	0					13	7	2	0	0	0	0.63381	1	11622	11622		43.626	1.2299	1	116570	+		11083	14826	7025	7058	11251	11251					0.06252811273077441
FILLISLGSAL	11	Unmodified	_FILLISLGSAL_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|238|3|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|238|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.8590698242188	2	573.860275	1145.706	1.059	0.00060771	-3.5916	-0.0020611	-2.5326	-0.0014534	573.8580346345026	22.558	0.23323	22.558	22.46	22.694	0					9	7	2	0	0	0	0.78104	1	6401	6401		19.104	2.6304	1	69573	+		11084	12470	7026	7059	11252	11252					0.13897205756484254
FILLLWLHP	9	Unmodified	_FILLLWLHP_					0	0	0			REV__ENST00000557963.1_1_15:101421085-101421394:+|nuORF	REV__ENST00000557963.1_1_15:101421085-101421394:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3527221679688	2	576.35242	1150.69029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.125	1	36.125	35.625	36.625	0								0	0	0	0.3269	1	12236	12236		29.842	1.9593	1		+		11085	20265	7027	7060	11253	11253					0.12096964030070012
FILPSQPGL	9	Unmodified	_FILPSQPGL_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.27960205078125	2	486.28166	970.548768	2.5232	0.001227	-0.29482	-0.00014336	2.2283	0.0010836	486.2790252103901	39.589	0.37826	39.589	39.404	39.782	0					16	8	3	0	0	0	0.22377	1	15689	15689		58.782	0	1	141950			11086	2963	7028	7061	11254	11254					0.06231545936952898
FILTYPLTF	9	Unmodified	_FILTYPLTF_					0	0	0			REV__ENST00000587557.5_1_19:9454019-9454262:+|nuORF	REV__ENST00000587557.5_1_19:9454019-9454262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.814697265625	2	557.812793	1113.61103	1.7311	0.00096564	1.7153	0.00095683	3.4464	0.0019225	557.8137262936932	34.866	0.13864	34.866	34.794	34.933	0					10	4	3	0	0	0	0.41354	1	13478	13478		40.573	5.3719	1	208880	+		11087	20496	7029	7062	11255	11255					0.05877272285260915
FIMCLILNLK	10	Unmodified	_FIMCLILNLK_					0	0	0			REV__ENST00000519732.5_1_17:67144970-67171813:-|nuORF	REV__ENST00000519732.5_1_17:67144970-67171813:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.3497314453125	2	604.350705	1206.68686	-0.59669	-0.00036061	-0.30877	-0.00018661	-0.90547	-0.00054722	604.3504416458563	17.34	0.094927	17.34	17.278	17.373	0					5	3	2	0	0	0	0.46128	1	4336	4336		37.159	0.71236	1	67071	+		11088	15564	7030	7063	11256	11256					0.09178209869537568
FIMDRAQAL	9	Unmodified	_FIMDRAQAL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7816162109375	2	532.781502	1063.54845	1.7234	0.00091822	-2.3744	-0.001265	-0.65094	-0.00034681	532.7806297649302	38.598	0.51873	38.598	38.472	38.99	0					46	18	4	0	0	0	0.18416	1	15115	15115		63.534	3.2399	1	870430			11089	2371	7031	7064	11257	11257					0.01921802945435047
FIMDRAQAL	9	Unmodified	_FIMDRAQAL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7810668945312	2	532.781502	1063.54845	1.1434	0.0006092	-0.80656	-0.00042972	0.33687	0.00017948	532.7810801912606	38.333	0.1488	38.333	38.258	38.407	0					12	7	2	0	0	0	0.27249	1	13713	13713		52.937	0	1	51357			11090	2371	7031	7064	11258	11258					0.01921802945435047
FIMDRAQAL	9	Unmodified	_FIMDRAQAL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7808837890625	2	532.781502	1063.54845	-1.28	-0.00068197	1.695	0.00090307	0.415	0.0002211	532.7824418019594	38.343	0.27502	38.343	38.273	38.548	0					18	13	2	0	0	0	0.38666	1	13725	13725		42.864	3.8428	1	115890			11091	2371	7031	7064	11259	11259					0.01921802945435047
FIMDRAQAL	9	Unmodified	_FIMDRAQAL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7811279296875	2	532.781502	1063.54845	1.7591	0.00093719	-2.345	-0.0012494	-0.58591	-0.00031216	532.7804204779814	38.485	0.49292	38.485	38.393	38.886	0					22	10	3	0	0	0	0.13726	1	15129	15129		70.816	5.013	1	1077300			11092	2371	7031	7064	11260	11260					0.01921802945435047
FIMDRAQAL	9	Unmodified	_FIMDRAQAL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7822875976562	2	532.781502	1063.54845	3.4024	0.0018127	-4.1538	-0.0022131	-0.75141	-0.00040034	532.7799018090747	38.545	0.58497	38.545	38.382	38.967	0					25	12	3	0	0	0	0.04067	1	15138	15138		98.582	35.048	1	1541600			11093	2371	7031	7064	11261	11261					0.01921802945435047
FINEQVYR	8	Unmodified	_FINEQVYR_					0	0	0		tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7764282226562	2	534.777274	1067.53999	-1.3424	-0.00071788	-0.40024	-0.00021404	-1.7426	-0.00093192	534.7770500261987	14.999	0.08474	14.999	14.959	15.043	0					5	3	2	0	0	0	0.64144	1	3279	3279		42.396	1.618	1	77493			11094	22913	7032	7065	11262	11262					0.008925723004722386
FINYIEAY	8	Unmodified	_FINYIEAY_					0	0	0		ENSG00000136634|ENST00000423557|IL10	ENSG00000136634|ENST00000423557|IL10	ENSG00000136634|ENST00000423557|IL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.75537109375	2	516.755475	1031.4964	0.30908	0.00015972	1.4659	0.00075749	1.7749	0.0009172	516.7561058133465	29.272	0.26985	29.272	29.151	29.421	0					13	10	2	0	0	0	0.64096	1	9203	9203		42.474	1.9018	1	63773			11095	4094	7033	7066	11263	11263					-0.018090371966536622
FIPSKPSNF	9	Unmodified	_FIPSKPSNF_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|291|2|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|291|2|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|291|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.777587890625	2	518.776742	1035.53893	0.26607	0.00013803	1.2118	0.00062863	1.4778	0.00076666	518.7773835500203	39.427	0.51233	39.427	39.256	39.768	0					15	11	2	0	0	0	0.22377	1	15580	15580		58.782	0	1	92615			11096	11187	7034	7067	11264	11264					0.022583579315551106
FIQAVRQTL	9	Unmodified	_FIQAVRQTL_					0	0	0		ENSG00000135778|ENST00000366628|NTPCR;ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF	ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.3167114257812	2	538.316566	1074.61858	0.23156	0.00012465	0.24555	0.00013218	0.47711	0.00025684	538.3165970374936	34.57	0.13092	34.57	34.521	34.652	0					5	3	2	0	0	0	0.2546	1	12896	12896		47.96	1.9873	1	141880			11097	4022	7035	7068	11265	11265					0.0842542460554796
FIQFSKTLY	9	Unmodified	_FIQFSKTLY_					0	0	0		TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B	TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant	TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.811767578125	2	573.813325	1145.6121	-1.4815	-0.00085009	-0.60578	-0.00034761	-2.0873	-0.0011977	573.8127121954336	33.421	0.13124	33.421	33.32	33.451	0					5	4	2	0	0	0	0.53083	1	11728	11728		29.15	1.2673	1	67997			11098	3844	7036	7069	11266	11266					0.0451148665420078
FIRKAFGC	8	Unmodified	_FIRKAFGC_					0	0	0		ENST00000371917.4_1_20:47633879-47635458:+|nuORF	ENST00000371917.4_1_20:47633879-47635458:+|nuORF	ENST00000371917.4_1_20:47633879-47635458:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2537536621094	2	471.254923	940.495293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.524	1	13.524	13.024	14.024	0								0	0	0	1.7419	1	2731	2731		9.4706	0.64823	1				11099	8972	7037	7070	11267	11267					0.022664699534402644
FIRMFHDL	8	Unmodified	_FIRMFHDL_					0	0	0			REV__ENST00000264033.5_1_11:119172888-119173011:+|nuORF	REV__ENST00000264033.5_1_11:119172888-119173011:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7801513671875	2	539.778762	1077.54297	1.8763	0.0010128	0.20803	0.00011229	2.0844	0.0011251	539.778872155909	30.679	0.36802	30.679	30.537	30.905	0					20	8	4	0	0	0	0.68754	1	11056	11056		35.201	1.6851	1	1754000	+		11100	18054	7038	7071	11268	11268					0.007301241536424641
FISAGNKVY	9	Unmodified	_FISAGNKVY_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7691345214844	2	499.768917	997.523281	-1.0374	-0.00051844	1.2162	0.00060782	0.17883	8.9373E-05	499.76937483655763	36.5	0.24477	36.5	36.396	36.641	0					16	10	2	0	0	0	0.13519	1	12346	12346		71.296	7.0884	1	107090			11101	2275	7039	7072	11269	11269					0.024420714145207967
FISAGNKVY	9	Unmodified	_FISAGNKVY_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7689208984375	2	499.768917	997.523281	-0.38811	-0.00019397	0.67721	0.00033845	0.2891	0.00014448	499.7690937627403	36.453	0.15368	36.453	36.375	36.529	0					14	7	2	0	0	0	0.4966	1	13038	13038		32.812	0	1	119330			11102	2275	7039	7072	11270	11270					0.024420714145207967
FISDGCRYL	9	Unmodified	_FISDGCRYL_					0	0	0		ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2579345703125	2	537.257859	1072.50117	0.74881	0.0004023	-0.52641	-0.00028282	0.2224	0.00011949	537.2577787105776	34.966	0.34813	34.966	34.831	35.179	0					45	15	5	0	0	0	0.2873	1	11424	11424		51.335	1.3109	1	1261100			11103	8129	7040	7073	11271	11271					-0.032184763255600046
FISNSWVY	8	Unmodified	_FISNSWVY_					0	0	0		ENST00000565912.1_1_16:57411753-57412206:+|nuORF	ENST00000565912.1_1_16:57411753-57412206:+|nuORF	ENST00000565912.1_1_16:57411753-57412206:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.24566650390625	2	508.247818	1014.48108	-0.58427	-0.00029695	-3.1397	-0.0015957	-3.724	-0.0018927	508.24640062572735	25.296	0.26709	25.296	25.189	25.456	0					13	9	2	0	0	0	0.66372	1	7871	7871		38.806	3.1879	1	111790			11104	10756	7041	7074	11272	11272					-0.025579039938634196
FISTEHNY	8	Unmodified	_FISTEHNY_					0	0	0			REV__RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	REV__RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.73291015625	2	505.732532	1009.45051	-0.73641	-0.00037243	0.53464	0.00027039	-0.20177	-0.00010204	505.732862972739	30.454	0.53531	30.454	30.247	30.782	0					51	18	4	0	0	0	0.74405	1	10122	10122		27.882	4.8398	1	1316800	+		11105	16313	7042	7075	11273	11273					-0.0538368237891973
FITLGQTQY	9	Unmodified	_FITLGQTQY_					0	0	0			REV__ENST00000590084.5_1_17:40720673-40720796:+|nuORF	REV__ENST00000590084.5_1_17:40720673-40720796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2796630859375	2	535.779482	1069.54441	0.70423	0.00037731	-0.27382	-0.00014671	0.43041	0.00023061	535.7795513293179	35.497	0.56663	35.497	35.381	35.948	0					30	11	4	0	0	0	0.12239	1	13790	13790		74.255	15.473	1	1608200	+		11106	20516	7043	7076	11274	11274					0.0124203672337444
FIVKMWRL	8	Unmodified	_FIVKMWRL_					0	0	0		ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.8851623535156	3	364.884407	1091.63139	1.2607	0.00046	1.015	0.00037036	2.2757	0.00083036	364.8847036483028	31.041	0.36616	31.041	30.982	31.348	0					22	8	4	0	0	0	0.72381	1	11675	11675		30.504	30.504	1	1550600			11107	3133	7044	7077	11275	11275					0.0892416446408788
FIVLRAYFRRR	11	Unmodified	_FIVLRAYFRRR_					0	0	0			REV__ENST00000565493.1_1_20:34637734-34637854:-|nuORF	REV__ENST00000565493.1_1_20:34637734-34637854:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.63836669921875	3	499.636883	1495.88882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.564	1	49.564	49.064	50.064	0								0	0	0	0.45674	1	18635	18635		14.086	5.6788	1		+		11108	20334	7045	7078	11276	11276					0.16071197661585757
FIVRAMQF	8	Unmodified	_FIVRAMQF_					0	0	0			REV__ENSG00000171984|ENST00000303142|SHLD1	REV__ENSG00000171984|ENST00000303142|SHLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.279296875	2	506.275855	1010.53716	1.0823	0.00054796	1.9716	0.00099816	3.0539	0.0015461	506.27685298572663	39.66	0.5026	39.66	39.36	39.863	0					34	17	2	0	0	0	0.41952	1	15527	15527		68.485	10.673	1	803190	+		11109	16443	7046	7079	11277	11277					0.03231025641969154
FIVTASRDGI	10	Unmodified	_FIVTASRDGI_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7986450195312	2	539.798206	1077.58186	0.30522	0.00016476	0.25062	0.00013529	0.55585	0.00030005	539.7982875893981	35.788	0.38407	35.788	35.695	36.079	0					31	11	4	0	0	0	0.17315	1	13879	13879		82.75	5.4329	1	1631300			11110	7364	7047	7080	11278	11278					0.0461712798901317
FIWMDMSSP	9	Unmodified	_FIWMDMSSP_					0	0	0		tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2425537109375	2	557.240821	1112.46709	-0.17232	-9.6023E-05	2.64	0.0014711	2.4676	0.0013751	557.2423820769834	20.404	0.16506	20.404	20.297	20.462	0					7	3	3	0	0	0	0.59802	1	6618	6618		21.96	0.25755	1	283640			11111	23058	7048	7081	11279	11279					-0.08464640808824697
FKAGSQSFPPK	11	Unmodified	_FKAGSQSFPPK_					0	0	0		ENSG00000185792|ENST00000332836|NLRP9;nc|ENSG00000185792|Q7RTR0-2|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.8222045898438	2	597.319306	1192.62406	3.1643	0.0018901	0.19108	0.00011413	3.3554	0.0020042	597.3192021406314	45.998	0.21371	45.998	45.898	46.111	0					19	10	3	0	0	0	0.575	1	18403	18403		38.754	2.436	1	111390			11112	7106	7049	7082	11280	11280					0.035451033973458834
FKDGKPLFL	9	Unmodified	_FKDGKPLFL_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant;HMCN1|p.Y2955Ifs*3|1|0.29|ENSG00000143341|chr1:186082933-186082934|-/A|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.812255859375	2	532.810585	1063.60662	3.4014	0.0018123	-0.053194	-2.8342E-05	3.3482	0.001784	532.810814430019	43.326	0.49683	43.326	43.203	43.699	0					52	17	4	0	0	0	0.38666	1	17471	17471		35.618	6.4687	1	2570700			11113	4539	7050	7083	11281	11281					0.07735807862354704
FKDMQMVF	8	Oxidation (M)	_FKDMQM(Oxidation (M))VF_		FKDM(0.074)QM(0.926)VF		FKDM(-11)QM(11)VF	0	0	1		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2430419921875	2	531.243363	1060.47217	-0.16505	-8.7682E-05	0.35341	0.00018775	0.18836	0.00010006	531.243450470807	29.258	0.59572	29.258	29.058	29.653	0					61	23	4	0	0	0	0.3961	1	9486	9486		71.296	7.9894	2	3068300			11114	2911	7051	7084	11282	11282		124			-0.055643369462131886
FKDTSLVPL	9	Unmodified	_FKDTSLVPL_					0	0	0			REV__ENSG00000168090|ENST00000303904|COPS6	REV__ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.29248046875	2	510.292225	1018.5699	-0.011951	-6.0987E-06	0.50392	0.00025715	0.49197	0.00025105	510.29243941524265	33.608	0.52033	33.608	33.5	34.021	0					19	11	3	0	0	0	0.36892	1	12826	12826		44.377	3.599	1	936160	+		11115	16241	7052	7085	11283	11283					0.06135511245793168
FKDVAEIQ	8	Unmodified	_FKDVAEIQ_					0	0	0		LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant;LRRK2|p.R1639Kfs*13|1|0.36|ENSG00000188906|chr12:40320067-40320068|-/A|frameshift_variant;LRRK2|p.R1639Gfs*15|1|0.59|ENSG00000188906|chr12:40320068-40320068|A/-|frameshift_variant;LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.N710Mfs*2|1|0.49|ENSG00000188906|chr12:40278144-40278144|A/-|frameshift_variant;LRRK2|p.L818Dfs*10|1|0.07|ENSG00000188906|chr12:40284084-40284085|-/GACTGCT|frameshift_variant;LRRK2|p.K906Rfs*8|1|0.29|ENSG00000188906|chr12:40293568-40293568|A/-|frameshift_variant	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2544250488281	2	475.2531	948.491647	3.6014	0.0017116	0.017471	8.3031E-06	3.6188	0.0017199	475.2530788317545	31.933	0.14469	31.933	31.861	32.005	0					9	5	2	0	0	0	0.41	1	10611	10611		69.628	5.4204	1	61762			11116	7284	7053	7086	11284	11284					0.01534078660574778
FKEMEMNRV	9	2 Oxidation (M)	_FKEM(Oxidation (M))EM(Oxidation (M))NRV_		FKEM(1)EM(1)NRV		FKEM(46)EM(46)NRV	0	0	2			REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF	REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.784423828125	2	608.278466	1214.54238	0.81049	0.000493	3.7658	0.0022906	4.5763	0.0027836	608.2806897642172	40.2	0.19955	40.2	40.079	40.279	0					9	7	2	0	0	0	0.35021	1	15835	15835		45.972	8.8131	1	63120	+		11117	15264	7054	7087	11285	11285		583;584			-0.05631083348384891
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.2554016113281	2	424.255446	846.496338	0.33279	0.00014119	-0.67987	-0.00028844	-0.34707	-0.00014725	424.25511317795883	23.989	0.30478	23.989	23.87	24.175	0					27	9	4	0	0	0	0.24915	1	6983	6983		102.77	14.13	1	3378000	+		11118	16156	7055	7088	11286	11286					0.06695007593987157
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.2552795410156	2	424.255446	846.496338	-0.3064	-0.00012999	-0.26192	-0.00011112	-0.56832	-0.00024111	424.2553316148275	24.222	0.2639	24.222	24.113	24.377	0					15	5	4	0	0	0	0.24105	1	8459	8459		115.46	9.0438	1	782240	+		11119	16156	7055	7088	11287	11287					0.06695007593987157
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.2550964355469	2	424.255446	846.496338	0.14548	6.1722E-05	-0.53458	-0.0002268	-0.38909	-0.00016508	424.2551142349713	24.014	0.26947	24.014	23.937	24.206	0					13	6	3	0	0	0	0.27512	1	7431	7431		90.777	13.93	1	317420	+		11120	16156	7055	7088	11288	11288					0.06695007593987157
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.2552795410156	2	424.255446	846.496338	-0.36568	-0.00015514	-0.027664	-1.1737E-05	-0.39334	-0.00016688	424.25539985395494	24.187	0.41855	24.187	24.028	24.447	0					22	8	4	0	0	0	0.24105	1	8294	8294		115.46	9.0438	1	3077800	+		11121	16156	7055	7088	11289	11289					0.06695007593987157
FKGKKSIQI	9	Unmodified	_FKGKKSIQI_					0	0	0			REV__NOVA1|p.E462K|1|0.39|ENSG00000139910|chr14:26448099-26448099|C/T|missense_variant	REV__NOVA1|p.E462K|1|0.39|ENSG00000139910|chr14:26448099-26448099|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.2216796875	3	350.221965	1047.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.864	1	23.864	23.364	24.364	0								0	0	0	0.37146	1	7353	7353		19.997	6.5427	1		+		11122	21299	7056	7089	11290	11290					0.12214899127980061
FKILPERF	8	Unmodified	_FKILPERF_					0	0	0			REV__TRRAP-ASNS|1|fusion	REV__TRRAP-ASNS|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.3131103515625	2	525.310752	1048.60695	3.4418	0.001808	0.81482	0.00042803	4.2567	0.0022361	525.3110577048749	49.882	0.23082	49.882	49.731	49.961	0					12	9	2	0	0	0	0.7976	1	19711	19711		20.947	1.587	1	76265	+		11123	17246	7057	7090	11291	11291					0.08459227582216045
FKLHGVISSV	10	Unmodified	_FKLHGVISSV_					0	0	0			REV__ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant	REV__ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8191528320312	2	543.818941	1085.62333	0.38379	0.00020871	0.53718	0.00029213	0.92097	0.00050084	543.8192035851109	32.512	0.75088	32.512	32.161	32.912	0					52	30	2	0	0	0	0.55603	1	10782	10782		39.253	39.253	1	171510	+		11124	12058	7058	7091	11292	11292					0.08394308748324875
FKLMGLGA	8	Unmodified	_FKLMGLGA_					0	0	0			REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.7384033203125	2	418.738574	835.462595	-0.86642	-0.00036281	0.0815	3.4127E-05	-0.78493	-0.00032868	418.73866680092794	27.745	0.22264	27.745	27.61	27.833	0					9	5	2	0	0	0	0.72892	1	9737	9737		29.842	0	1	399230	+		11125	12722	7059	7092	11293	11293					0.038282628305978506
FKLSCVTEGL	10	Unmodified	_FKLSCVTEGL_					0	0	0			REV__ENST00000301332.2_1_8:145698463-145698769:+|nuORF	REV__ENST00000301332.2_1_8:145698463-145698769:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7908935546875	2	548.788992	1095.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.818	1	11.818	11.318	12.318	0								0	0	0	0.4201	1	2364	2364		14.137	3.2716	1		+		11126	16208	7060	7093	11294	11294					0.019472500227720957
FKLWPTKINQ	10	Unmodified	_FKLWPTKINQ_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.5795593261719	3	425.580041	1273.71829	-0.38384	-0.00016335	-0.89209	-0.00037965	-1.2759	-0.00054301	425.5797590057142	20.278	0.26756	20.278	20.143	20.41	0					13	5	5	0	0	0	0.2978	1	6412	6412		70.399	19.607	1	1342000			11127	11584	7061	7094	11295	11295					0.09238242219498716
FKMFAVFCAL	10	Unmodified	_FKMFAVFCAL_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	588.8013916015625	2	588.800848	1175.58714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.496	1	43.496	42.996	43.996	0								0	0	0	0.40446	1	14223	14223		29.15	3.5755	1				11128	2746	7062	7095	11296	11296					0.006373922556122125
FKMYLGIT	8	Unmodified	_FKMYLGIT_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3;ENSG00000173626|ENST00000368602|TRAPPC3L	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7642517089844	2	486.764789	971.515025	-0.085553	-4.1644E-05	-0.99371	-0.0004837	-1.0793	-0.00052535	486.76428095439024	17.458	0.24906	17.458	17.318	17.567	0					8	5	2	0	0	0	0.52345	1	5197	5197		57.811	9.8957	1	309800			11129	1264	7063	7096	11297	11297					0.028128011735248037
FKNADDTLK	9	Unmodified	_FKNADDTLK_					0	0	0		nc|ENSG00000185513|Q9Y468-4|L3MBTL1	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2755126953125	2	526.274564	1050.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.929	1	13.929	13.429	14.429	0								0	0	0	0.30009	1	3283	3283		35.152	4.8343	1				11130	11685	7064	7097	11298	11298					0.011328487179980584
FKNMVIVTT	9	Unmodified	_FKNMVIVTT_					0	0	0		NLRC4|p.F931Lfs*6|1|0.34|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant;NLRC4|p.L964Rfs*6|1|0.05|ENSG00000091106|chr2:32224657-32224658|-/ATAAAGTGTACTC|frameshift_variant;ENSG00000091106|ENST00000402280|NLRC4;NLRC4|p.N539Tfs*8|1|0.29|ENSG00000091106|chr2:32250248-32250248|T/-|frameshift_variant	NLRC4|p.F931Lfs*6|1|0.34|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant	NLRC4|p.F931Lfs*6|1|0.34|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7959594726562	2	526.794078	1051.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.204	1	31.204	30.704	31.704	0								0	0	0	0.35507	1	10322	10322		24.203	0	1				11131	1849	7065	7098	11299	11299					0.04987857748028546
FKNPQCPTL	9	Carbamidomethyl (C)	_FKNPQC(Carbamidomethyl (C))PTL_	FKNPQC(1)PTL		FKNPQC(49)PTL		0	1	0		nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.781494140625	2	552.778959	1103.54336	1.3201	0.00072971	1.3397	0.00074057	2.6598	0.0014703	552.7798644853091	22.739	0.12846	22.739	22.684	22.812	0					9	4	3	0	0	0	0.30951	1	6474	6474		49.442	11.63	1	55763			11132	4501	7066	7099	11300	11300	191				-0.00426500917183148
FKPTNKQPN	9	Unmodified	_FKPTNKQPN_					0	0	0			REV__ENSG00000109576|ENST00000337664|AADAT	REV__ENSG00000109576|ENST00000337664|AADAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2926025390625	2	537.290548	1072.56654	3.3417	0.0017955	0.43449	0.00023345	3.7762	0.0020289	537.2909716010565	18.313	0.46196	18.313	18.044	18.506	0					19	9	3	0	0	0	0.082776	1	5439	5439		77.318	3.0625	1	1595100	+		11133	13904	7067	7100	11301	11301					0.03316261191821468
FKQGCYPCI	9	Unmodified	_FKQGCYPCI_					0	0	0			REV__ENST00000505484.5_1_4:121652936-121737791:-|nuORF	REV__ENST00000505484.5_1_4:121652936-121737791:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7450561523438	2	529.743531	1057.47251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.735	1	29.735	29.235	30.235	0								0	0	0	0.28164	1	9413	9413		38.806	9.6566	1		+		11134	14998	7068	7101	11302	11302					-0.05392917226345162
FKSNVSSSF	9	Unmodified	_FKSNVSSSF_					0	0	0			REV__ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant	REV__ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7485046386719	2	501.748182	1001.48181	-0.56519	-0.00028358	0.75731	0.00037998	0.19212	9.6396E-05	501.74824297159245	38.135	0.24461	38.135	38.039	38.283	0					9	5	2	0	0	0	0.18605	1	14980	14980		63.306	0	1	62261	+		11135	16722	7069	7102	11303	11303					-0.0188710934479559
FKSRDQIPV	9	Unmodified	_FKSRDQIPV_					0	0	0			REV__MRPL50|p.N131S|1|0.22|ENSG00000136897|chr9:101390551-101390551|T/C|missense_variant	REV__MRPL50|p.N131S|1|0.22|ENSG00000136897|chr9:101390551-101390551|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.3065185546875	2	545.306198	1088.59784	1.1893	0.00064856	-0.69862	-0.00038096	0.49073	0.0002676	545.8070527786581	29.021	0.25564	29.021	28.904	29.16	0					16	9	2	0	0	0	0.44593	1	9107	9107		37.812	2.1932	1	78506	+		11136	14889	7070	7103	11304	11304					0.057088342259021374
FKSYAGEKI	9	Unmodified	_FKSYAGEKI_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant;SMC4|p.D465Efs*32|1|0.12|ENSG00000113810|chr3:160416372-160416373|-/GCATACATCTT|frameshift_variant;ENST00000468653.5_1_3:160117521-160130242:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.781982421875	2	521.782025	1041.5495	1.6243	0.00084754	-1.3467	-0.00070267	0.27764	0.00014487	521.7813330251048	39.34	0.32473	39.34	39.202	39.526	0					18	7	3	0	0	0	0.13907	1	15549	15549		63.534	0	1	684860			11137	2826	7071	7104	11305	11305					0.030383405859993218
FKTGVLGQ	8	Unmodified	_FKTGVLGQ_					0	0	0		ENST00000566468.1_1_15:74883534-74883915:+|nuORF;nc|ENSG00000179361|Q8IVW6-3|ARID3B	ENST00000566468.1_1_15:74883534-74883915:+|nuORF	ENST00000566468.1_1_15:74883534-74883915:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2452697753906	2	425.245078	848.475603	0.37315	0.00015868	-0.44508	-0.00018927	-0.07193	-3.0588E-05	425.2448649977621	25.909	0.29643	25.909	25.721	26.017	0					6	4	2	0	0	0	0.30437	1	9223	9223		82.305	0	1	216810			11138	10762	7072	7105	11306	11306					0.04530417214334648
FKTRWLMYWYR	11	Unmodified	_FKTRWLMYWYR_					0	0	0		INPP1|p.L52Rfs*11|1|0.32|ENSG00000151689|chr2:190360253-190360254|-/CT|frameshift_variant	INPP1|p.L52Rfs*11|1|0.32|ENSG00000151689|chr2:190360253-190360254|-/CT|frameshift_variant	INPP1|p.L52Rfs*11|1|0.32|ENSG00000151689|chr2:190360253-190360254|-/CT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	825.4243774414062	2	825.424113	1648.83367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.732	1	45.732	45.232	46.232	0								0	0	0	0.45674	1	14177	14177		2.7184	1.8903	1				11139	11225	7073	7106	11307	11307					0.03521023078860708
FKTTSNNNL	9	Unmodified	_FKTTSNNNL_					0	0	0			REV__CON__P13717	REV__CON__P13717	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7652587890625	2	519.764363	1037.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.744	1	29.744	29.244	30.244	0								0	0	0	0.27939	1	9711	9711		39.253	0.44669	1		+	+	11140	12592	7074	7107	11308	11308					-0.0030832194181584782
FKTYNYPK	8	Unmodified	_FKTYNYPK_					0	0	0		ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16;ENST00000428400.5_1_X:47085983-47086499:+|nuORF	ENSG00000102225|ENST00000357227|CDK16	ENSG00000102225|ENST00000357227|CDK16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7752075195312	2	530.776742	1059.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.854	1	22.854	22.354	23.354	0								0	0	0	1.7419	1	6878	6878		49.442	5.0644	1				11141	2159	7075	7108	11309	11309					0.011543579315684838
FKVEGKCVH	9	Unmodified	_FKVEGKCVH_					0	0	0			REV__ENST00000591146.2_1_19:1203272-1203464:+|nuORF	REV__ENST00000591146.2_1_19:1203272-1203464:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7767944335938	2	523.776219	1045.53789	5.3067	0.0027795	-2.5918	-0.0013575	2.7149	0.001422	523.7748715440983	17.97	0.17052	17.97	17.881	18.051	0					7	4	2	0	0	0	0.25716	1	4608	4608		54.776	5.3348	1	262420	+		11142	20527	7076	7109	11310	11310					0.016938202910068867
FKVNKSKQK	9	Unmodified	_FKVNKSKQK_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.8373413085938	2	553.837665	1105.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.743	1	15.743	15.243	16.243	0								0	0	0	0.32837	1	3477	3477		29.17	4.6509	1				11143	5571	7077	7110	11311	11311					0.11217400013947554
FKVNTDYE	8	Unmodified	_FKVNTDYE_					0	0	0		KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant;KDM6A|p.N634Tfs*57|1|0.26|ENSG00000147050|chrX:45063791-45063791|A/-|frameshift_variant;KDM6A|p.N906Mfs*31|1|0.53|ENSG00000147050|chrX:45076707-45076707|A/-|frameshift_variant;KDM6A|p.T1081Pfs*2|1|0.15|ENSG00000147050|chrX:45082743-45082743|A/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A	KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant	KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2412109375	2	508.24019	1014.46583	-0.096462	-4.9026E-05	1.6572	0.00084228	1.5608	0.00079325	508.2411539705908	11.635	0.077709	11.635	11.588	11.665	0					6	3	2	0	0	0	0.78751	1	2181	2181		12.207	0.69583	1	248740			11144	4762	7078	7111	11312	11312					-0.0408281558170529
FKVRGIIVS	9	Unmodified	_FKVRGIIVS_					0	0	0		RPA4|p.P62H|1|0.24|ENSG00000204086|chrX:96884495-96884495|C/A|missense_variant;ENSG00000204086|ENST00000373040|RPA4	RPA4|p.P62H|1|0.24|ENSG00000204086|chrX:96884495-96884495|C/A|missense_variant	RPA4|p.P62H|1|0.24|ENSG00000204086|chrX:96884495-96884495|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.2185974121094	3	340.218443	1017.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.25	1	18.25	17.75	18.75	0								0	0	0	0.34907	1	4515	4515		25.574	5.5773	1				11145	7670	7079	7112	11313	11313					0.1253891647357932
FKVVGKSEA	9	Unmodified	_FKVVGKSEA_					0	0	0			REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7760009765625	2	482.776742	963.538931	0.68412	0.00033028	-1.8872	-0.00091108	-1.203	-0.0005808	482.77580798907366	23.255	0.21595	23.255	23.145	23.361	0					9	4	3	0	0	0	0.16002	1	8000	8000		66.429	2.8954	1	663590	+		11146	13106	7080	7113	11314	11314					0.05570357931571834
FKYFMVLIQ	9	Unmodified	_FKYFMVLIQ_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.827880859375	2	594.827921	1187.64129	-0.55034	-0.00032736	1.0869	0.00064651	0.53655	0.00031916	594.8288620828939	13.908	0.097415	13.908	13.879	13.977	0					11	4	3	0	0	0	0.44593	1	2932	2932		23.042	7.4007	1	59236			11147	3575	7081	7114	11315	11315					0.05497307678820107
FLAASGTVQI	10	Unmodified	_FLAASGTVQI_					0	0	0			REV__ENSG00000160445|ENST00000291900|ZER1	REV__ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.78204345703125	2	503.782025	1005.5495	-0.057423	-2.8929E-05	0.74554	0.00037559	0.68812	0.00034666	503.78261046231273	30.866	0.41704	30.866	30.627	31.044	0					29	17	2	0	0	0	0.46128	1	9862	9862		49.536	5.1589	1	100750	+		11148	15755	7082	7115	11316	11316					0.04694340586001999
FLAEAARS	8	Unmodified	_FLAEAARS_					0	0	0		HECTD3|p.P212Rfs*11|1|0.16|ENSG00000126107|chr1:45010110-45010110|G/-|frameshift_variant;HECTD3|p.V564Cfs*41|1|0.18|ENSG00000126107|chr1:45006728-45006728|G/-|frameshift_variant;ENSG00000126107|ENST00000372172|HECTD3	HECTD3|p.P212Rfs*11|1|0.16|ENSG00000126107|chr1:45010110-45010110|G/-|frameshift_variant	HECTD3|p.P212Rfs*11|1|0.16|ENSG00000126107|chr1:45010110-45010110|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.7324523925781	2	432.732335	863.450116	-0.25833	-0.00011179	-0.019282	-8.3437E-06	-0.27761	-0.00012013	432.7323653778794	24.79	0.15069	24.79	24.708	24.858	0					6	4	2	0	0	0	0.64144	1	7376	7376		42.396	3.59	1	136640			11149	3462	7083	7116	11317	11317					0.012929426918958598
FLAEAELL	8	Unmodified	_FLAEAELL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000487660.1_1_3:53268946-53276200:-|nuORF;ENST00000472528.5_1_3:53269083-53276224:-|nuORF;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000163931|ENST00000462138|TKT;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2500915527344	2	453.252569	904.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.862	1	23.862	23.362	24.362	0								0	0	0	1.7419	1	7352	7352		60.294	7.9948	1				11150	6989;5628	7084	7117	11318	11318					0.03451864291673701
FLAFLGFTGF	10	Unmodified	_FLAFLGFTGF_					0	0	0			REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|51|3|anti-sense	REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|51|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.2949829101562	2	560.29731	1118.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.144	1	38.144	37.644	38.644	0								0	0	0	0.37816	1	12870	12870		37.159	6.6555	1		+		11151	20807	7085	7118	11319	11319					0.025521189710616454
FLAFYVLS	8	Unmodified	_FLAFYVLS_					0	0	0		ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2669982910156	2	480.265479	958.516405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.218	1	27.218	26.718	27.718	0								0	0	0	1.7419	1	8650	8650		54.765	0	1				11152	10130	7086	7119	11320	11320					0.03548758533952423
FLAHEYPDL	9	Unmodified	_FLAHEYPDL_					0	0	0		ABHD8|p.T259I|1|0.47|ENSG00000127220|chr19:17294831-17294831|G/A|missense_variant;ENSG00000127220|ENST00000247706|ABHD8	ABHD8|p.T259I|1|0.47|ENSG00000127220|chr19:17294831-17294831|G/A|missense_variant	ABHD8|p.T259I|1|0.47|ENSG00000127220|chr19:17294831-17294831|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.820068359375	2	552.771657	1103.52876	-1.2518	-0.00069195	-2.5704	-0.0014208	-3.8222	-0.0021128	552.7703946554915	16.375	0.11821	16.375	16.285	16.403	0					5	3	2	0	0	0	0.55282	1	3842	3842		26.796	1.3459	1	72909			11153	20	7087	7120	11321	11321					-0.018862497936879663
FLAIIHVL	8	Unmodified	_FLAIIHVL_					0	0	0		SYNE2|p.A222V|1|0.42|ENSG00000054654|chr14:63954793-63954793|C/T|missense_variant	SYNE2|p.A222V|1|0.42|ENSG00000054654|chr14:63954793-63954793|C/T|missense_variant	SYNE2|p.A222V|1|0.42|ENSG00000054654|chr14:63954793-63954793|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.29541015625	2	463.297114	924.579674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.727	1	18.727	18.227	19.227	0								0	0	0	1.7419	1	4944	4944		24.504	0	1				11154	22507	7088	7121	11322	11322					0.1143674404183912
FLALALGR	8	Unmodified	_FLALALGR_					0	0	0			REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7726745605469	2	430.771263	859.527973	2.5341	0.0010916	0.56108	0.0002417	3.0952	0.0013333	430.7715829846377	32.089	0.72213	32.089	31.935	32.657	0					35	14	3	0	0	0	0.4434	1	12051	12051		65.897	0	1	7873700	+		11155	13202	7089	7122	11323	11323					0.0925900034795859
FLASIIFSN	9	Unmodified	_FLASIIFSN_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2807922363281	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.934	1	45.934	45.434	46.434	0								0	0	0	0.3119	1	17722	17722		32.812	3.6629	1				11156	6783	7090	7123	11324	11324					0.03883242074334703
FLAVRSSY	8	Unmodified	_FLAVRSSY_					0	0	0		ENST00000296328.8_1_3:196089371-196089518:-|nuORF	ENST00000296328.8_1_3:196089371-196089518:-|nuORF	ENST00000296328.8_1_3:196089371-196089518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7554626464844	2	471.75581	941.497067	-0.017002	-8.0208E-06	0.10669	5.0333E-05	0.089691	4.2312E-05	471.75583967909137	32.989	0.23127	32.989	32.885	33.117	0					22	10	3	0	0	0	0.60719	1	10691	10691		47.916	1.9636	1	362340			11157	8456	7091	7124	11325	11325					0.023978022430469537
FLAVRSSY	8	Unmodified	_FLAVRSSY_					0	0	0		ENST00000296328.8_1_3:196089371-196089518:-|nuORF	ENST00000296328.8_1_3:196089371-196089518:-|nuORF	ENST00000296328.8_1_3:196089371-196089518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.755126953125	2	471.75581	941.497067	-0.56406	-0.0002661	-0.014806	-6.9849E-06	-0.57887	-0.00027308	471.75576753466936	33.005	0.33992	33.005	32.889	33.229	0					25	10	4	0	0	0	0.30437	1	11530	11530		82.305	2.3658	1	975240			11158	8456	7091	7124	11326	11326					0.023978022430469537
FLAWCPFCCLL	11	Unmodified	_FLAWCPFCCLL_					0	0	0			REV__ENST00000571335.5_1_17:19445708-19459199:+|nuORF	REV__ENST00000571335.5_1_17:19445708-19459199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2052001953125	3	439.206053	1314.59633	-0.37183	-0.00016331	-0.2224	-9.7681E-05	-0.59424	-0.00026099	439.2059827508576	32.149	0.15619	32.149	32.001	32.157	0					5	3	2	0	0	0	0.70609	1	12184	12184		27.047	0	1	46449	+		11159	15151	7092	7125	11327	11327					-0.04838582450361173
FLCIQNIQ	8	Unmodified	_FLCIQNIQ_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|260|2|anti-sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|260|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.75592041015625	2	489.757495	977.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.667	1	13.667	13.167	14.167	0								0	0	0	1.7419	1	3161	3161		40.573	1.7665	1		+		11160	20734	7093	7126	11328	11328					0.010787290253915671
FLCKVVAW	8	Unmodified	_FLCKVVAW_					0	0	0			REV__ENSG00000215644|ENST00000400723|GCGR	REV__ENSG00000215644|ENST00000400723|GCGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2685852050781	2	483.267499	964.520445	0.59833	0.00028915	1.5851	0.00076603	2.1834	0.0010552	483.26815954427803	37.992	0.14495	37.992	37.911	38.056	0					15	7	3	0	0	0	0.61433	1	14430	14430		46.766	7.5136	1	194410	+		11161	17601	7094	7127	11329	11329					0.036765247559969794
FLCRLHTY	8	Unmodified	_FLCRLHTY_					0	0	0		ENSG00000135569|ENST00000258034|TAAR5	ENSG00000135569|ENST00000258034|TAAR5	ENSG00000135569|ENST00000258034|TAAR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7723999023438	2	526.770937	1051.52732	0.39932	0.00021035	1.939	0.0010214	2.3383	0.0012317	526.771880646767	25.66	0.11135	25.66	25.589	25.701	0					5	3	2	0	0	0	0.68432	1	8004	8004		35.618	7.364	1	59835			11162	4002	7095	7128	11330	11330					0.0036183763656936208
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.2883911132812	2	566.287671	1130.56079	0.26341	0.00014916	0.76833	0.0004351	1.0317	0.00058426	566.2881914737127	29.52	0.13623	29.52	29.434	29.57	0					7	3	3	0	0	0	0.16806	1	10564	10564		65.465	5.3471	1	236180			11163	3592	7096	7129	11331	11331					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.2872924804688	2	566.287671	1130.56079	0.23783	0.00013468	0.091834	5.2005E-05	0.32966	0.00018668	566.2874974130934	29.548	0.1533	29.548	29.446	29.599	0					8	3	3	0	0	0	0.16806	1	10961	10961		65.465	8.7443	1	161600			11164	3592	7096	7129	11332	11332					0.0007311788947390596
FLDEVWKVNKM	11	Unmodified	_FLDEVWKVNKM_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3-2|QSER1	REV__nc|ENSG00000060749|Q2KHR3-2|QSER1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2462463378906	3	470.247962	1407.72206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.329	1	40.329	39.829	40.829	0								0	0	0	0.37035	1	16004	16004		42.338	1.258	1		+		11165	13083	7097	7130	11333	11333					0.03450543931057837
FLDFTRLIG	9	Unmodified	_FLDFTRLIG_					0	0	0			REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.3070068359375	2	541.305667	1080.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.036	1	42.036	41.536	42.536	0								0	0	0	0.35507	1	15947	15947		24.203	1.1603	1		+		11166	12399	7098	7131	11334	11334					0.059706198569983826
FLDQLTVFQ	9	Unmodified	_FLDQLTVFQ_					0	0	0			REV__ENST00000371429.3_1_1:54231171-54231309:-|nuORF	REV__ENST00000371429.3_1_1:54231171-54231309:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.7981567382812	2	555.795132	1109.57571	4.4771	0.0024884	0.48792	0.00027118	4.9651	0.0027596	555.795533959912	38.069	0.39093	38.069	37.904	38.295	0					45	21	3	0	0	0	0.099922	1	12812	12812		79.451	4.4077	1	225730	+		11167	18654	7099	7132	11335	11335					0.0253060975749122
FLDRVEASKSV	11	Unmodified	_FLDRVEASKSV_					0	0	0			REV__ENST00000553399.1_1_14:68282450-68282693:-|nuORF	REV__ENST00000553399.1_1_14:68282450-68282693:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	625.8405151367188	2	625.840602	1249.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.719	1	19.719	19.219	20.219	0								0	0	0	0.44488	1	5155	5155		27.047	1.4733	1		+		11168	20221	7100	7133	11336	11336					0.05180453734942603
FLDYEAGVLA	10	Unmodified	_FLDYEAGVLA_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2781372070312	2	549.279315	1096.54408	1.1578	0.00063595	-3.7478	-0.0020586	-2.59	-0.0014226	549.2769727700243	24.576	0.15349	24.576	24.506	24.66	0					8	3	3	0	0	0	0.57532	1	7711	7711		37.159	1.5408	1	71246			11169	2461	7101	7134	11337	11337					-0.0003338299648021348
FLEEAVRPI	9	Unmodified	_FLEEAVRPI_					0	0	0			REV__nc|ENSG00000125337|Q9UIL4-2|KIF25	REV__nc|ENSG00000125337|Q9UIL4-2|KIF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3056030273438	2	537.303124	1072.5917	3.3429	0.0017962	0.51483	0.00027662	3.8578	0.0020728	537.3034782757243	41.631	0.37186	41.631	41.506	41.878	0					20	10	4	0	0	0	0.13519	1	16558	16558		71.296	0	1	606720	+		11170	14425	7102	7135	11338	11338					0.058303159943761784
FLEIATLR	8	Unmodified	_FLEIATLR_					0	0	0			REV__ENSG00000174607|ENST00000310836|UGT8	REV__ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.786865234375	2	481.78711	961.559667	-0.11253	-5.4213E-05	-0.29429	-0.00014178	-0.40681	-0.000196	481.7869362874569	27.205	0.22105	27.205	27.114	27.335	0					10	5	3	0	0	0	0.58597	1	9486	9486		51.335	8.861	1	380470	+		11171	16574	7103	7136	11339	11339					0.07734948311235712
FLEKAIGLAV	10	Unmodified	_FLEKAIGLAV_					0	0	0		nc|ENSG00000290203|Q96PH1-5|NOX5;ENST00000527315.5_1_15:69323805-69349033:+|nuORF;nc|ENSG00000290203|Q96PH1-4|NOX5;nc|ENSG00000290203|Q96PH1-6|NOX5;nc|ENSG00000290203|Q96PH1-3|NOX5;nc|ENSG00000290203|Q96PH1-2|NOX5;ENSG00000255346|ENST00000388866|NOX5	nc|ENSG00000290203|Q96PH1-5|NOX5	nc|ENSG00000290203|Q96PH1-5|NOX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.823974609375	2	530.823692	1059.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.087	1	33.087	32.587	33.587	0								0	0	0	0.33107	1	11082	11082		45.972	5.1941	1				11172	8018	7104	7137	11340	11340					0.10540077033851958
FLEPIMKPY	9	Unmodified	_FLEPIMKPY_					0	0	0			REV__IL13RA2|p.F376L|1|0.48|ENSG00000123496|chrX:115004095-115004095|A/C|missense_variant	REV__IL13RA2|p.F376L|1|0.48|ENSG00000123496|chrX:115004095-115004095|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.3062133789062	2	569.304278	1136.594	3.4461	0.0019619	0.92221	0.00052502	4.3683	0.0024869	569.3047829784662	45.273	0.93772	45.273	44.907	45.845	0					71	38	2	0	0	0	0.39215	1	18044	18044		42.396	8.8806	1	178030	+		11173	20761	7105	7138	11341	11341					0.03117028407837097
FLEPSVHL	8	Unmodified	_FLEPSVHL_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2574768066406	2	471.258185	940.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.521	1	34.521	34.021	35.021	0								0	0	0	1.7419	1	11288	11288		35.201	4.6971	1		+		11174	13190	7106	7139	11342	11342					0.029186863857944445
FLEPVRCLI	9	Unmodified	_FLEPVRCLI_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547994.5_1_12:56718022-56726878:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;PAN2|p.A1143Pfs*11|1|0.08|ENSG00000135473|chr12:56318384-56318384|C/-|frameshift_variant	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.308837890625	2	545.309895	1088.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.2	1	29.2	28.7	29.7	0								0	0	0	0.13425	1	10786	10786		47.657	0	1				11175	3997	7107	7140	11343	11343					0.06447850501967878
FLEQPSGLEQ	10	Unmodified	_FLEQPSGLEQ_					0	0	0		SCARF2|p.P530Q|1|0.11|ENSG00000244486|chr22:20427502-20427502|G/T|missense_variant	SCARF2|p.P530Q|1|0.11|ENSG00000244486|chr22:20427502-20427502|G/T|missense_variant	SCARF2|p.P530Q|1|0.11|ENSG00000244486|chr22:20427502-20427502|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.28564453125	2	574.285128	1146.5557	1.6713	0.00095981	-0.8927	-0.00051266	0.77862	0.00044715	574.2847520697843	24.604	0.16355	24.604	24.513	24.676	0					8	3	3	0	0	0	0.46128	1	8530	8530		49.536	13.089	1	412620			11176	22377	7108	7141	11344	11344					-0.011711859731576624
FLEQRQFS	8	Unmodified	_FLEQRQFS_					0	0	0		ENST00000354667.8_2_7:26240216-26240336:-|nuORF	ENST00000354667.8_2_7:26240216-26240336:-|nuORF	ENST00000354667.8_2_7:26240216-26240336:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7695922851562	2	527.769448	1053.52434	0.55872	0.00029487	-1.5034	-0.00079343	-0.94464	-0.00049855	527.7687682092402	35.17	0.11247	35.17	35.113	35.225	0					8	5	2	0	0	0	0.63077	1	11530	11530		44.117	1.7207	1	54098			11177	8787	7109	7142	11345	11345					-0.00027714216571439465
FLETTETR	8	Unmodified	_FLETTETR_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2508850097656	2	498.753464	995.492375	-0.73515	-0.00036666	-0.63705	-0.00031773	-1.3722	-0.00068439	498.75359743396035	26.107	0.97016	26.107	25.898	26.868	0					51	19	6	0	0	0	0.46905	1	9122	9122		63.306	4.5243	1	13710000			11178	7343	7110	7143	11346	11346					-0.005551266903694341
FLEVEQGKR	9	Unmodified	_FLEVEQGKR_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.303955078125	2	553.303655	1104.59276	-0.40279	-0.00022287	1.3295	0.00073563	0.92673	0.00051276	553.304154822009	30.522	0.12548	30.522	30.463	30.588	0					9	4	3	0	0	0	0.51991	1	10031	10031		23.042	1.0826	1	50361			11179	1636	7111	7144	11347	11347					0.04464530363270569
FLFLLDEQ	8	Unmodified	_FLFLLDEQ_					0	0	0		ENST00000503042.5_1_5:1325844-1330799:-|nuORF;ENSG00000049656|ENST00000320895|CLPTM1L	ENST00000503042.5_1_5:1325844-1330799:-|nuORF	ENST00000503042.5_1_5:1325844-1330799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7689208984375	2	512.771126	1023.5277	0.072569	3.7211E-05	-2.9902	-0.0015333	-2.9176	-0.0014961	512.7698187680062	18.229	1.4817	18.229	18.076	19.557	0					69	30	6	0	0	0	0.51384	1	5575	5575		58.782	7.4465	1	58601000			11180	1239	7112	7145	11348	11348					0.016875358374363714
FLFLPLTYA	9	Unmodified	_FLFLPLTYA_					0	0	0			REV__ENST00000578651.5_1_18:683014-712587:-|nuORF	REV__ENST00000578651.5_1_18:683014-712587:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.8062133789062	2	542.807511	1083.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.239	1	14.239	13.739	14.739	0								0	0	0	0.38735	1	3650	3650		14.664	0.88877	1		+		11181	20437	7113	7146	11349	11349					0.06201289630848805
FLFNAPEIL	9	Unmodified	_FLFNAPEIL_					0	0	0		OR51A4|p.S95L|1|0.39|ENSG00000205497|chr11:4946817-4946817|G/A|missense_variant	OR51A4|p.S95L|1|0.39|ENSG00000205497|chr11:4946817-4946817|G/A|missense_variant	OR51A4|p.S95L|1|0.39|ENSG00000205497|chr11:4946817-4946817|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2918701171875	2	532.294768	1062.57498	-1.2682	-0.00067506	-3.0214	-0.0016083	-4.2896	-0.0022833	532.2936849182144	37.389	0.24928	37.389	37.298	37.548	0					22	12	3	0	0	0	0.13267	1	13375	13375		71.877	18.526	1	185550			11182	11880	7114	7147	11350	11350					0.04619815108412695
FLGCLNIPV	9	Carbamidomethyl (C)	_FLGC(Carbamidomethyl (C))LNIPV_	FLGC(1)LNIPV		FLGC(50)LNIPV		0	1	0		ENST00000567825.3_1_16:1384662-1392395:+|nuORF;nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3	ENST00000567825.3_1_16:1384662-1392395:+|nuORF	ENST00000567825.3_1_16:1384662-1392395:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.781494140625	2	516.78097	1031.54739	-0.013123	-6.7815E-06	0.64798	0.00033487	0.63486	0.00032808	516.7810353108779	30.78	0.1483	30.78	30.667	30.815	0					6	5	2	0	0	0	0.30268	1	10148	10148		50.025	12.213	1	62880			11183	1006	7115	7148	11351	11351	33				0.03287588576517919
FLGCPKMAG	9	Unmodified	_FLGCPKMAG_					0	0	0			REV__ENST00000495739.1_1_3:21478408-21552461:-|nuORF	REV__ENST00000495739.1_1_3:21478408-21552461:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.22705078125	2	462.227516	922.44048	-0.80531	-0.00037224	-0.50777	-0.00023471	-1.3131	-0.00060694	462.22735723744495	23.83	0.25833	23.83	23.768	24.026	0					14	9	2	0	0	0	0.41354	1	7207	7207		40.573	4.9543	1	124220	+		11184	19764	7116	7149	11352	11352					-0.02384284909487633
FLGFASEASL	10	Unmodified	_FLGFASEASL_					0	0	0		ENST00000307149.9_1_16:23464350-23464488:-|nuORF	ENST00000307149.9_1_16:23464350-23464488:-|nuORF	ENST00000307149.9_1_16:23464350-23464488:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2678833007812	2	521.266207	1040.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.182	1	35.182	34.682	35.682	0								0	0	0	0.3639	1	13616	13616		40.778	1.972	1				11185	8528	7117	7150	11353	11353					-0.0007765216794268781
FLGGKKPQTP	10	Unmodified	_FLGGKKPQTP_					0	0	0		HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|31|2|sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|31|2|sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|31|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8095703125	2	536.811116	1071.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.43	1	28.43	27.93	28.93	0								0	0	0	0.39244	1	9435	9435		32.812	3.6424	1				11186	11200	7118	7151	11354	11354					0.07474022231258459
FLGLEMCAGLL	11	Unmodified	_FLGLEMCAGLL_					0	0	0			REV__ENST00000571796.5_1_17:80869637-80887508:+|nuORF	REV__ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	389.5360412597656	3	389.536456	1165.58754	-1.2159	-0.00047362	0.49636	0.00019335	-0.71949	-0.00028027	389.53660040211565	24.625	0.35625	24.625	24.556	24.913	0					22	12	3	0	0	0	0.48922	1	7553	7553		45.022	2.6261	1	714700	+		11187	20386	7119	7152	11355	11355					0.011367671848120153
FLGRTRKG	8	Unmodified	_FLGRTRKG_					0	0	0		ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7839050292969	2	467.782693	933.550834	2.642	0.0012359	0.12947	6.0564E-05	2.7714	0.0012964	467.78273434960465	44.014	0.13485	44.014	43.917	44.052	0					9	5	2	0	0	0	0.66372	1	17627	17627		38.806	38.806	1	108890			11188	10633	7120	7153	11356	11356					0.08140019465429305
FLGSFIPTQL	10	Unmodified	_FLGSFIPTQL_					0	0	0		ENST00000418140.5_2_7:43686327-43686537:-|nuORF	ENST00000418140.5_2_7:43686327-43686537:-|nuORF	ENST00000418140.5_2_7:43686327-43686537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.8163452148438	2	561.813325	1121.6121	3.4693	0.0019491	2.345	0.0013175	5.8143	0.0032665	561.8146823521296	30.368	0.49637	30.368	30.115	30.612	0					14	10	2	0	0	0	0.49411	1	11249	11249		45.972	1.8554	1	793370			11189	9377	7121	7154	11357	11357					0.05615486654187407
FLGTSLGIL	9	Unmodified	_FLGTSLGIL_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-4|NEK1	REV__nc|ENSG00000137601|Q96PY6-4|NEK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7759704589844	2	460.776211	919.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.813	1	36.813	36.313	37.313	0								0	0	0	0.25856	1	13181	13181		42.474	3.6683	1		+		11190	14929	7122	7155	11358	11358					0.07488143562670757
FLGVCLGMQL	10	Unmodified	_FLGVCLGMQL_					0	0	0		CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant;ENSG00000047230|ENST00000359276|CTPS2;ENST00000463285.5_1_1:41461708-41469783:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1;CTPS1|p.D577*|1|0.1|ENSG00000171793|chr1:41010192-41010193|-/C|frameshift_variant;ENSG00000171793|ENST00000650070|CTPS1	CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant	CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7826538085938	2	540.782656	1079.55076	1.9921	0.0010773	-1.608	-0.00086959	0.38408	0.0002077	540.7816644358268	36.335	0.26637	36.335	36.242	36.509	0					12	7	2	0	0	0	0.42631	1	14143	14143		53.351	5.3919	1	407690			11191	712	7123	7156	11359	11359					0.01416515358914694
FLHCKKLV	8	Unmodified	_FLHCKKLV_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.A622V|1|0.12|ENSG00000196235|chr19:39471645-39471645|C/T|missense_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.29522705078125	2	494.294048	986.573543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.758	1	41.758	41.258	42.258	0								0	0	0	1.7419	1	16419	16419		25.45	1.9275	1				11192	22500	7124	7157	11360	11360					0.07971902538679387
FLHCQVKEY	9	Unmodified	_FLHCQVKEY_					0	0	0			REV__ENST00000511316.1_1_4:174253953-174254163:-|nuORF	REV__ENST00000511316.1_1_4:174253953-174254163:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.7885131835938	2	583.786784	1165.55902	1.3737	0.00080197	1.7967	0.0010489	3.1705	0.0018509	583.7882014556812	32.349	0.34169	32.349	32.225	32.567	0					24	8	4	0	0	0	0.2873	1	12282	12282		51.335	0	1	757530	+		11193	19876	7125	7158	11361	11361					-0.017142144001127235
FLHCSIYFV	9	Unmodified	_FLHCSIYFV_					0	0	0		tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1	tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1	tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.7826538085938	2	564.78097	1127.54739	0.15771	8.907E-05	2.3593	0.0013325	2.517	0.0014215	564.7823032401716	37.781	0.13729	37.781	37.708	37.846	0					7	4	2	0	0	0	0.49003	1	14797	14797		33.516	1.9858	1	57666			11194	22756	7126	7159	11362	11362					-0.011284114234740628
FLHCSSLSPAM	11	Unmodified	_FLHCSSLSPAM_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.7780151367188	2	596.778102	1191.54165	0.70733	0.00042212	-0.20509	-0.00012239	0.50224	0.00029973	596.7778849618084	31.237	0.30018	31.237	31.124	31.424	0					12	7	3	0	0	0	0.61618	1	11355	11355		35.618	0.46626	1	207670			11195	9719	7127	7160	11363	11363					-0.04645877997427306
FLHFMLGW	8	Oxidation (M)	_FLHFM(Oxidation (M))LGW_		FLHFM(1)LGW		FLHFM(44)LGW	0	0	1		ENSG00000115850|ENST00000264162|LCT;LCT|p.G928Afs*16|1|0.18|ENSG00000115850|chr2:135809566-135809566|T/-|frameshift_variant;LCT|p.P1081Qfs*3|1|0.27|ENSG00000115850|chr2:135809105-135809105|G/-|frameshift_variant;LCT|p.L1181Sfs*2|1|0.04|ENSG00000115850|chr2:135808805-135808806|-/GG|frameshift_variant	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7642822265625	2	533.762581	1065.51061	3.3889	0.0018089	-0.11264	-6.0125E-05	3.2763	0.0017487	533.762528299791	39.281	0.32375	39.281	39.19	39.513	0					12	7	2	0	0	0	0.63381	1	15523	15523		43.626	6.4669	1	301910			11196	2942	7128	7161	11364	11364		128			-0.01952663249358011
FLHGRSTT	8	Unmodified	_FLHGRSTT_					0	0	0			REV__ENSG00000174514|ENST00000367147|MFSD4A	REV__ENSG00000174514|ENST00000367147|MFSD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7420959472656	2	459.743234	917.471915	-0.91857	-0.00042231	-1.6585	-0.0007625	-2.5771	-0.0011848	459.7425104711124	32.987	0.27683	32.987	32.824	33.101	0					18	11	2	0	0	0	0.66372	1	11020	11020		38.806	1.7777	1	161780	+		11197	16570	7129	7162	11365	11365					0.0098774744047887
FLHLIIPLGI	10	Unmodified	_FLHLIIPLGI_					0	0	0			REV__ENSG00000179363|ENST00000319560|TMEM31	REV__ENSG00000179363|ENST00000319560|TMEM31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2488098144531	3	379.24611	1134.7165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.473	1	48.473	47.973	48.973	0								0	0	0	0.41967	1	19263	19263		24.519	2.8334	1		+		11198	16773	7130	7163	11366	11366					0.1545323320156058
FLHNSGSP	8	Unmodified	_FLHNSGSP_					0	0	0			REV__ENST00000393459.5_1_10:102791121-102791208:+|nuORF	REV__ENST00000393459.5_1_10:102791121-102791208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.7091979980469	2	429.70886	857.403166	-0.24325	-0.00010453	0.14309	6.1485E-05	-0.10016	-4.3041E-05	429.70877258969597	25.084	0.21196	25.084	25.014	25.226	0					11	6	3	0	0	0	0.63077	1	7494	7494		44.117	3.5442	1	151550	+		11199	18851	7131	7164	11367	11367					-0.031239168592264832
FLHVDPRK	8	Unmodified	_FLHVDPRK_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2890930175781	2	506.290351	1010.56615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.596	1	13.596	13.096	14.096	0								0	0	0	1.7419	1	3346	3346		25.45	1.2474	1				11200	3194	7132	7165	11368	11368					0.06128886262604283
FLIHRDGDL	9	Unmodified	_FLIHRDGDL_					0	0	0			REV__ENST00000527786.6_1_11:128642686-128642797:+|nuORF	REV__ENST00000527786.6_1_11:128642686-128642797:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.2893676757812	2	543.290548	1084.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.604	1	29.604	29.104	30.104	0								0	0	0	0.28164	1	9980	9980		38.806	0	1		+		11201	20015	7133	7166	11369	11369					0.027642611918054172
FLIPCVQQL	9	Unmodified	_FLIPCVQQL_					0	0	0			REV__ENST00000475582.5_1_2:27590663-27590978:-|nuORF	REV__ENST00000475582.5_1_2:27590663-27590978:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.794921875	2	530.79662	1059.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.23	1	21.23	20.73	21.73	0								0	0	0	0.27166	1	6117	6117		40.573	0	1		+		11202	19528	7134	7167	11370	11370					0.051281616106280126
FLIPDHSL	8	Unmodified	_FLIPDHSL_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.25799560546875	2	471.258185	940.501818	-0.60588	-0.00028553	0.43236	0.00020375	-0.17353	-8.1776E-05	471.25837010476613	34.769	0.19862	34.769	34.68	34.878	0					11	5	3	0	0	0	0.65276	1	12989	12989		40.573	7.057	1	224800	+		11203	14438	7135	7168	11371	11371					0.029186863857944445
FLKILAMHG	9	Unmodified	_FLKILAMHG_					0	0	0		ENSG00000163464|ENST00000295683|CXCR1	ENSG00000163464|ENST00000295683|CXCR1	ENSG00000163464|ENST00000295683|CXCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8007202148438	2	515.29933	1028.58411	3.258	0.0016788	-2.2873	-0.0011786	0.97075	0.00050023	515.7992144909683	36.442	0.515	36.442	36.297	36.812	0					39	10	6	0	0	0	0.39123	1	14178	14178		42.474	0.078325	1	2839500			11204	5557	7136	7169	11372	11372					0.07095885193098184
FLKPLRPTQ	9	Unmodified	_FLKPLRPTQ_					0	0	0			REV__CNBD1|p.K78T|1|0.19|ENSG00000176571|chr8:86905155-86905155|A/C|missense_variant	REV__CNBD1|p.K78T|1|0.19|ENSG00000176571|chr8:86905155-86905155|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.5587158203125	3	367.225598	1098.65496	0.96504	0.00035439	-4.4828	-0.0016462	-3.5178	-0.0012918	367.5585109845447	11.926	0.094327	11.926	11.889	11.983	0					4	2	2	0	0	0	0.42902	1	2429	2429		39.253	7.723	1	198940	+		11205	12523	7137	7170	11373	11373					0.10958301502273571
FLLACHAQL	9	Unmodified	_FLLACHAQL_					0	0	0			REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2747802734375	2	508.273312	1014.53207	2.9697	0.0015094	-0.42583	-0.00021644	2.5439	0.001293	508.27298692594803	41.308	0.26239	41.308	41.214	41.477	0					11	6	3	0	0	0	0.16524	1	16428	16428		65.803	65.803	1	261340	+		11206	12722	7138	7171	11374	11374					0.02538721779342268
FLLFFCMH	8	Unmodified	_FLLFFCMH_					0	0	0			REV__OR7A10|p.Q100H|1|0.16|ENSG00000127515|chr19:14841578-14841578|C/G|missense_variant	REV__OR7A10|p.Q100H|1|0.16|ENSG00000127515|chr19:14841578-14841578|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7612915039062	2	529.253534	1056.49252	0.47956	0.00025381	-2.1431	-0.0011343	-1.6636	-0.00088045	529.251510597296	31.313	0.41517	31.313	31.173	31.589	0					43	17	4	0	0	0	0.55232	1	10103	10103		54.895	5.453	1	1323500	+		11207	21323	7139	7172	11375	11375					-0.03347121495744432
FLLFLLMY	8	Unmodified	_FLLFLLMY_					0	0	0		OR10H5|p.T38M|1|0.11|ENSG00000172519|chr19:15794161-15794161|C/T|missense_variant;OR10H5|p.L130Cfs*7|1|0.31|ENSG00000172519|chr19:15794432-15794432|C/-|frameshift_variant;OR10H2|p.L130Cfs*7|1|0.18|ENSG00000171942|chr19:15728427-15728427|C/-|frameshift_variant;OR10H1|p.L130Cfs*7|1|0.22|ENSG00000186723|chr19:15807650-15807650|G/-|frameshift_variant;ENSG00000172519|ENST00000642092|OR10H5;ENSG00000171942|ENST00000305899|OR10H2;ENSG00000186723|ENST00000641419|OR10H1	OR10H5|p.T38M|1|0.11|ENSG00000172519|chr19:15794161-15794161|C/T|missense_variant	OR10H5|p.T38M|1|0.11|ENSG00000172519|chr19:15794161-15794161|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.3017578125	2	530.301007	1058.58746	0.43502	0.00023069	1.2243	0.00064927	1.6594	0.00087996	530.302040281058	32.739	0.19556	32.739	32.69	32.885	0					9	7	2	0	0	0	0.70073	1	10601	10601		33.493	13.011	1	54259			11208	6335	7140	7173	11376	11376					0.0605113524711669
FLLHQMLM	8	Oxidation (M)	_FLLHQM(Oxidation (M))LM_		FLLHQM(1)LM		FLLHQM(39)LM(-39)	0	0	1			REV__URB1|p.S1483L|1|0.45|ENSG00000142207|chr21:32338769-32338769|G/A|missense_variant	REV__URB1|p.S1483L|1|0.45|ENSG00000142207|chr21:32338769-32338769|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.77099609375	2	524.769548	1047.52454	1.8625	0.00097737	0.86286	0.0004528	2.7253	0.0014302	524.7700782015611	31.005	0.30393	31.005	30.877	31.181	0					27	7	5	0	0	0	0.4434	1	11228	11228		65.897	65.897	2	1195700	+		11209	22263	7141	7174	11377	11377		807			0.0026824618742011808
FLLIELLF	8	Unmodified	_FLLIELLF_					0	0	0			REV__ENST00000525438.5_1_11:46139644-46141386:-|nuORF	REV__ENST00000525438.5_1_11:46139644-46141386:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.3103332519531	2	504.312429	1006.61031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.641	1	51.641	51.141	52.141	0								0	0	0	1.7419	1	20174	20174		28.254	2.6802	1		+		11210	19987	7142	7175	11378	11378					0.10726477636251275
FLLKPIAEAP	10	Unmodified	_FLLKPIAEAP_					0	0	0		ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENST00000491588.1_1_22:22123495-22123630:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.8323364257812	2	549.831517	1097.64848	0.33951	0.00018668	0.60772	0.00033414	0.94723	0.00052082	549.831768648426	30.467	0.50038	30.467	30.346	30.846	0					42	17	3	0	0	0	0.56063	1	10137	10137		42.396	15.703	1	1436500			11211	10074	7143	7176	11379	11379					0.10356363550886272
FLLKPQNY	8	Unmodified	_FLLKPQNY_					0	0	0		ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant;ENSG00000162618|ENST00000370742|ADGRL4	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7866516113281	2	511.78711	1021.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.853	1	35.853	35.353	36.353	0								0	0	0	1.7419	1	12799	12799		65.897	19.946	1				11212	81	7144	7177	11380	11380					0.0497494831122367
FLLKPQNY	8	Unmodified	_FLLKPQNY_					0	0	0		ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant;ENSG00000162618|ENST00000370742|ADGRL4	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7848205566406	2	511.78711	1021.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.87	1	35.87	35.37	36.37	0								0	0	0	1.7419	1	12806	12806		54.765	14.192	1				11213	81	7144	7177	11381	11381					0.0497494831122367
FLLLFRREN	9	Unmodified	_FLLLFRREN_					0	0	0		ENSG00000079689|ENST00000377961|SCGN	ENSG00000079689|ENST00000377961|SCGN	ENSG00000079689|ENST00000377961|SCGN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.3493041992188	2	604.35094	1206.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.606	1	17.606	17.106	18.106	0								0	0	0	0.18541	1	5259	5259		45.972	15.469	1				11214	1626	7145	7178	11382	11382					0.09225088905282064
FLLPSAPALG	10	Unmodified	_FLLPSAPALG_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2874755859375	2	493.289485	984.564418	-1.2677	-0.00062535	-2.0404	-0.0010065	-3.3081	-0.0016319	493.2885880608027	32.523	0.13948	32.523	32.438	32.578	0					8	5	2	0	0	0	0.57532	1	10842	10842		37.159	6.6555	1	52780			11215	7696	7146	7179	11383	11383					0.07151832453985207
FLLRCFQP	8	Unmodified	_FLLRCFQP_					0	0	0			REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2775268554688	2	512.275855	1022.53716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.75	1	35.75	35.25	36.25	0								0	0	0	1.7419	1	12756	12756		44.531	0	1		+		11216	18101	7147	7180	11384	11384					0.02679025641964472
FLLSSARKR	9	Unmodified	_FLLSSARKR_					0	0	0		ENST00000505667.5_1_4:169432617-169432773:+|nuORF	ENST00000505667.5_1_4:169432617-169432773:+|nuORF	ENST00000505667.5_1_4:169432617-169432773:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.3302612304688	2	539.330008	1076.64546	1.5579	0.00084024	-0.73746	-0.00039774	0.82046	0.0004425	539.3296405770184	20.992	0.32627	20.992	20.92	21.246	0					18	9	3	0	0	0	0.22837	1	5703	5703		42.396	0	1	540180			11217	10186	7148	7181	11385	11385					0.11020533216742479
FLLTPTAPY	9	Unmodified	_FLLTPTAPY_					0	0	0		ENST00000453571.5_1_11:47290775-47295429:+|nuORF	ENST00000453571.5_1_11:47290775-47295429:+|nuORF	ENST00000453571.5_1_11:47290775-47295429:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.78436279296875	2	511.781493	1021.54843	1.2319	0.00063048	4.0078	0.0020511	5.2397	0.0026816	511.78399162299183	36.09	0.2692	36.09	35.985	36.254	0					11	8	2	0	0	0	0.30268	1	14049	14049		50.025	5.4935	1	436560			11218	9671	7149	7182	11386	11386					0.03852126217077512
FLLVPRRG	8	Unmodified	_FLLVPRRG_					0	0	0			REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant	REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.27459716796875	2	479.303262	956.59197	-0.65976	-0.00031622	-0.59178	-0.00028364	-1.2515	-0.00059987	479.30307316555684	34.643	0.35728	34.643	34.443	34.8	0					21	7	4	0	0	0	0.74117	1	13241	13241		28.254	1.4582	1	1227300	+		11219	14914	7150	7183	11387	11387					0.11193780504902406
FLLVQNKF	8	Unmodified	_FLLVQNKF_					0	0	0			REV__ENSG00000180488|ENST00000370791|MIGA1	REV__ENSG00000180488|ENST00000370791|MIGA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.8688659667969	3	336.867411	1007.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.74	1	51.74	51.24	52.24	0								0	0	0	1.7419	1	19179	19179		17.365	0	1		+		11220	16810	7151	7184	11388	11388					0.07691538690903599
FLLYTKACE	9	Unmodified	_FLLYTKACE_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2803955078125	2	544.27826	1086.54197	3.6731	0.0019992	0.27287	0.00014851	3.946	0.0021477	544.2783702369859	19.665	0.3701	19.665	19.557	19.927	0					13	7	2	0	0	0	0.12239	1	6129	6129		74.255	18.751	1	6540400	+		11221	14190	7152	7185	11389	11389					0.0021586499406112125
FLNAYQGL	8	Unmodified	_FLNAYQGL_					0	0	0		nc|ENSG00000148835|Q15542-2|TAF5;ENSG00000148835|ENST00000369839|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2438659667969	2	463.242535	924.470518	2.5838	0.0011969	0.23379	0.0001083	2.8176	0.0013052	463.2427667291805	31.843	0.56282	31.843	31.437	32	0					18	11	3	0	0	0	0.52345	1	11960	11960		57.811	5.5121	1	529500			11222	4853	7153	7186	11390	11390					0.005261133517251437
FLNDGEKSLYN	11	Unmodified	_FLNDGEKSLYN_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	650.3156127929688	2	650.314417	1298.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.081	1	39.081	38.581	39.581	0								0	0	0	0.43542	1	13151	13151		29.17	0	1		+		11223	18767	7154	7187	11391	11391					-0.023081293986251694
FLNLSSNPL	9	Unmodified	_FLNLSSNPL_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7737731933594	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.815	1	33.815	33.315	34.315	0								0	0	0	0.040385	1	12893	12893		74.255	0.090034	1				11224	5075	7155	7188	11392	11392					0.032220540689422705
FLNQQEPQI	9	Unmodified	_FLNQQEPQI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7886352539062	2	558.787838	1115.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.572	1	39.572	39.072	40.072	0								0	0	0	0.1219	1	15649	15649		66.429	2.8954	1		+		11225	21046	7156	7189	11393	11393					0.007965376093125087
FLNWVVIFLA	10	Unmodified	_FLNWVVIFLA_					0	0	0		ENST00000567020.6_2_16:2552545-2553103:+|nuORF	ENST00000567020.6_2_16:2552545-2553103:+|nuORF	ENST00000567020.6_2_16:2552545-2553103:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.3571166992188	2	611.35516	1220.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.034	1	54.034	53.534	54.534	0								0	0	0	0.4201	1	16423	16423		16.473	0.83134	1				11226	10767	7157	7190	11394	11394					0.09424642821886664
FLPASETHPF	10	Unmodified	_FLPASETHPF_					0	0	0		ENST00000430060.1_1_21:23157296-23158685:+|nuORF	ENST00000430060.1_1_21:23157296-23158685:+|nuORF	ENST00000430060.1_1_21:23157296-23158685:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.284912109375	2	573.284931	1144.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.528	1	34.528	34.028	35.028	0								0	0	0	0.4201	1	13243	13243		24.203	1.1603	1				11227	9483	7158	7191	11395	11395					-0.011185609023414145
FLPCLHVY	8	Unmodified	_FLPCLHVY_					0	0	0			REV__nc|ENSG00000269313|Q9H6Y5-3|MAGIX	REV__nc|ENSG00000269313|Q9H6Y5-3|MAGIX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2571716308594	2	496.257131	990.499709	0.96533	0.00047905	-0.96972	-0.00048123	-0.0043987	-2.1829E-06	496.2567693682595	44.641	0.46424	44.641	44.483	44.947	0					41	19	3	0	0	0	0.63381	1	17849	17849		43.626	0	1	256730	+		11228	21248	7159	7192	11396	11396					0.004079343763464749
FLPCLLCYPP	10	Unmodified	_FLPCLLCYPP_					0	0	0		ENSG00000164056|ENST00000651917|SPRY1	ENSG00000164056|ENST00000651917|SPRY1	ENSG00000164056|ENST00000651917|SPRY1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.2918090820312	2	583.292856	1164.57116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.473	1	44.473	43.973	44.973	0								0	0	0	0.38459	1	13919	13919		35.201	7.1192	1				11229	5645	7160	7193	11397	11397					-0.004543139812994923
FLPEVPLK	8	Unmodified	_FLPEVPLK_					0	0	0			REV__ENST00000357066.7_1_19:2071661-2071847:-|nuORF	REV__ENST00000357066.7_1_19:2071661-2071847:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.78399658203125	2	471.786579	941.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.816	1	33.816	33.316	34.316	0								0	0	0	1.7419	1	11025	11025		40.778	3.6191	1		+		11230	18528	7161	7194	11398	11398					0.08548733942313902
FLPILQHI	8	Unmodified	_FLPILQHI_					0	0	0		ENSG00000198336|ENST00000393450|MYL4	ENSG00000198336|ENST00000393450|MYL4	ENSG00000198336|ENST00000393450|MYL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7998352050781	2	490.80002	979.585488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.891	1	13.891	13.391	14.391	0								0	0	0	1.7419	1	3265	3265		35.201	0	1				11231	7549	7162	7195	11399	11399					0.09487842553505743
FLPMVRSDV	9	Unmodified	_FLPMVRSDV_					0	0	0		ENST00000265022.7_1_3:185867377-185867518:-|nuORF	ENST00000265022.7_1_3:185867377-185867518:-|nuORF	ENST00000265022.7_1_3:185867377-185867518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2855834960938	2	532.283877	1062.5532	3.4097	0.0018149	-0.36049	-0.00019188	3.0492	0.001623	532.2837085392725	15.038	0.2186	15.038	14.928	15.146	0					10	4	3	0	0	0	0.099922	1	3887	3887		79.451	5.196	1	2242300			11232	8340	7163	7196	11400	11400					0.024426870882052754
FLPNFFTLP	9	Unmodified	_FLPNFFTLP_					0	0	0			REV__NRDE2|p.N752Tfs*5|1|0.34|ENSG00000119720|chr14:90289120-90289120|T/-|frameshift_variant	REV__NRDE2|p.N752Tfs*5|1|0.34|ENSG00000119720|chr14:90289120-90289120|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2958374023438	2	548.29731	1094.58007	0.48761	0.00026735	-2.5932	-0.0014218	-2.1056	-0.0011545	548.2958199049094	21.956	0.1768	21.956	21.854	22.031	0					9	4	3	0	0	0	0.2873	1	7070	7070		51.335	1.8939	1	441840	+		11233	14253	7164	7197	11401	11401					0.03656118971025535
FLPPMAAAPLA	11	Unmodified	_FLPPMAAAPLA_					0	0	0		ENST00000266546.10_1_12:7310842-7311004:+|nuORF	ENST00000266546.10_1_12:7310842-7311004:+|nuORF	ENST00000266546.10_1_12:7310842-7311004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.8050537109375	2	549.804445	1097.59434	1.271	0.00069882	-0.32536	-0.00017889	0.94567	0.00051993	549.8041602587946	24.612	0.11606	24.612	24.568	24.684	0					7	3	3	0	0	0	0.65461	1	7295	7295		31.955	0	1	138280			11234	8354	7165	7198	11402	11402					0.049444481276623264
FLPPPHSHFL	10	Unmodified	_FLPPPHSHFL_					0	0	0		ENST00000487143.5_1_2:168811849-168812002:-|nuORF	ENST00000487143.5_1_2:168811849-168812002:-|nuORF	ENST00000487143.5_1_2:168811849-168812002:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.3213500976562	2	596.319109	1190.62366	3.1669	0.0018885	1.0831	0.0006459	4.25	0.0025344	596.3197239247376	38.669	0.31086	38.669	38.56	38.871	0					15	6	3	0	0	0	0.69166	1	15212	15212		23.042	23.042	1	447050			11235	10035	7166	7199	11403	11403					0.03597728468184869
FLPPQQLEA	9	Unmodified	_FLPPQQLEA_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF;ENSG00000168014|ENST00000334126|C2CD3	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7825317382812	2	521.782025	1041.5495	0.36983	0.00019297	0.82878	0.00043244	1.1986	0.00062541	521.7823901491321	32.985	0.44922	32.985	32.767	33.216	0					41	17	3	0	0	0	0.22837	1	11038	11038		42.396	10.441	1	1374000			11236	10551	7167	7200	11404	11404					0.030383405859765844
FLPQPPPLV	9	Unmodified	_FLPQPPPLV_					0	0	0			REV__ENSG00000186788|ENST00000445385|SPATA31D3	REV__ENSG00000186788|ENST00000445385|SPATA31D3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.534423828125	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.672	1	43.672	43.172	44.172	0								0	0	0	0.36609	1	15102	15102		20.947	1.8434	1		+		11237	17090	7168	7201	11405	11405					0.0821242283365109
FLPSVRKNM	9	Unmodified	_FLPSVRKNM_					0	0	0		ENST00000512760.5_1_4:79851330-79860302:-|nuORF	ENST00000512760.5_1_4:79851330-79860302:-|nuORF	ENST00000512760.5_1_4:79851330-79860302:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.3097534179688	2	546.305144	1090.59573	1.2112	0.0006617	1.8832	0.0010288	3.0944	0.0016905	546.8064283111108	24.849	0.52546	24.849	24.462	24.987	0					28	15	3	0	0	0	0.54267	1	7341	7341		27.882	2.4321	1	90668			11238	10242	7169	7202	11406	11406					0.05406082216450159
FLPTFCISL	9	Unmodified	_FLPTFCISL_					0	0	0		ENST00000465224.5_1_2:97494642-97498350:+|nuORF	ENST00000465224.5_1_2:97494642-97498350:+|nuORF	ENST00000465224.5_1_2:97494642-97498350:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2978515625	2	520.777896	1039.54124	1.6233	0.00084536	-1.3141	-0.00068435	0.30917	0.00016101	520.7771976045111	14.048	0.46062	14.048	13.946	14.407	0					18	9	2	0	0	0	0.5654	1	3373	3373		25.45	1.2474	1	2161100			11239	9773	7170	7203	11407	11407					0.023050703450280707
FLQEHNTTL	9	Unmodified	_FLQEHNTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7811889648438	2	551.780013	1101.54547	1.3075	0.00072143	-0.46609	-0.00025718	0.84137	0.00046425	551.779620148303	31.091	0.11368	31.091	31.036	31.15	0					7	4	2	0	0	0	0.21419	1	9973	9973		52.937	0	1	40318			11240	1076	7171	7204	11408	11408					-0.0012374890770843194
FLQISDALI	9	Unmodified	_FLQISDALI_					0	0	0		nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;nc|ENSG00000119283|Q6ZTA4-2|TRIM67;TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant;ENSG00000119283|ENST00000366653|TRIM67;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.31024169921875	2	510.292225	1018.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.033	1	41.033	40.533	41.533	0								0	0	0	0.19749	1	15606	15606		51.335	7.2187	1				11241	2037	7172	7205	11409	11409					0.06135511245793168
FLQLATSL	8	Unmodified	_FLQLATSL_					0	0	0			REV__MED25|p.P201Rfs*13|3|0.22|ENSG00000104973|chr19:49829856-49829856|C/-|frameshift_variant	REV__MED25|p.P201Rfs*13|3|0.22|ENSG00000104973|chr19:49829856-49829856|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.76025390625	2	446.760561	891.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.206	1	38.206	37.706	38.706	0								0	0	0	1.7419	1	15003	15003		35.618	0	1		+		11242	13750	7173	7206	11410	11410					0.05647570528560664
FLQLHHQQQ	9	Unmodified	_FLQLHHQQQ_					0	0	0		ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.5403137207031	3	393.540357	1177.59924	-0.66312	-0.00026096	0.4889	0.0001924	-0.17422	-6.8565E-05	393.54051627384706	22.148	0.51806	22.148	22.037	22.555	0					21	10	3	0	0	0	0.41113	1	7331	7331		40.778	40.778	1	1082200			11243	7900	7174	7207	11411	11411					0.01754468314652513
FLQLPHQDS	9	Unmodified	_FLQLPHQDS_					0	0	0		CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant;nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant	CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7748413085938	2	542.774731	1083.53491	1.8845	0.0010229	-1.5207	-0.00082539	0.36382	0.00019747	542.7739779663582	35.983	0.12721	35.983	35.903	36.03	0					6	3	2	0	0	0	0.55967	1	13552	13552		19.104	11.91	1	65476			11244	414	7175	7208	11412	11412					-0.0035173156215932977
FLQPVVGLAG	10	Unmodified	_FLQPVVGLAG_					0	0	0			REV__nc|ENSG00000142583|P22732-2|SLC2A5	REV__nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7926330566406	2	500.794935	999.575317	0.15247	7.6358E-05	-4.2238	-0.0021153	-4.0714	-0.0020389	500.7927153639328	26.918	0.34895	26.918	26.639	26.988	0					11	8	2	0	0	0	0.54197	1	8743	8743		40.778	8.8233	1	36272	+		11245	15153	7176	7209	11413	11413					0.07551234828292763
FLRARSAGPAD	11	Unmodified	_FLRARSAGPAD_					0	0	0		ENST00000396863.8_1_20:42295755-42295851:+|nuORF	ENST00000396863.8_1_20:42295755-42295851:+|nuORF	ENST00000396863.8_1_20:42295755-42295851:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.54388427734375	3	387.543878	1159.60981	0.16736	6.486E-05	-0.073303	-2.8408E-05	0.094059	3.6452E-05	387.54379893883424	22.029	0.36166	22.029	21.924	22.285	0					9	7	2	0	0	0	0.66915	1	7409	7409		30.569	0	1	432920			11246	9209	7177	7210	11414	11414					0.03638450969083351
FLRDAVETR	9	Unmodified	_FLRDAVETR_					0	0	0		ENSG00000088682|ENST00000262507|COQ9	ENSG00000088682|ENST00000262507|COQ9	ENSG00000088682|ENST00000262507|COQ9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.8018798828125	2	553.80128	1105.58801	1.1397	0.00063114	0.13521	7.488E-05	1.2749	0.00070602	553.8013972464361	26.387	0.14986	26.387	26.289	26.439	0					8	3	3	0	0	0	0.44593	1	8482	8482		37.812	1.3648	1	224530			11247	1780	7178	7211	11415	11415					0.03943646220500341
FLRGSNAES	9	Unmodified	_FLRGSNAES_					0	0	0		LRRC31|p.K23T|1|0.23|ENSG00000114248|chr3:169869740-169869740|T/G|missense_variant;nc|ENSG00000114248|Q6UY01-3|LRRC31;nc|ENSG00000114248|Q6UY01-4|LRRC31;nc|ENSG00000114248|Q6UY01-2|LRRC31;ENSG00000114248|ENST00000316428|LRRC31	LRRC31|p.K23T|1|0.23|ENSG00000114248|chr3:169869740-169869740|T/G|missense_variant	LRRC31|p.K23T|1|0.23|ENSG00000114248|chr3:169869740-169869740|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7452087402344	2	490.743431	979.472308	2.6789	0.0013146	1.67	0.00081954	4.3489	0.0021342	490.74403399598833	46.793	0.25852	46.793	46.653	46.912	0					23	12	3	0	0	0	0.35021	1	18698	18698		45.972	45.972	1	130600			11248	2838	7179	7212	11416	11416					-0.018248776303494196
FLRHNKDLVAQ	11	Unmodified	_FLRHNKDLVAQ_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	670.874755859375	2	670.875311	1339.73607	-0.77112	-0.00051732	-0.11252	-7.5484E-05	-0.88363	-0.00059281	670.8753525896852	26.2	0.17438	26.2	26.112	26.287	0					9	4	3	0	0	0	0.42842	1	9019	9019		40.058	10.888	1	437480			11249	6628	7180	7213	11417	11417					0.07978957474369963
FLRMWGPGR	9	Unmodified	_FLRMWGPGR_					0	0	0		ENST00000394224.3_1_11:65407601-65408454:+|nuORF	ENST00000394224.3_1_11:65407601-65408454:+|nuORF	ENST00000394224.3_1_11:65407601-65408454:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.2969970703125	2	560.297653	1118.58075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.405	1	46.405	45.905	46.905	0								0	0	0	0.1836	1	18570	18570		53.351	5.6941	1				11250	9172	7181	7214	11418	11418					0.026206351391010685
FLSAREVAR	9	Unmodified	_FLSAREVAR_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant;HERC1|p.V1879Lfs*26|1|0.37|ENSG00000103657|chr15:63694004-63694004|T/-|frameshift_variant;HERC1|p.M2237*|1|0.39|ENSG00000103657|chr15:63678206-63678206|T/-|frameshift_variant;HERC1|p.C2300Hfs*14|1|0.44|ENSG00000103657|chr15:63678017-63678018|AA/-|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7989501953125	2	524.79854	1047.58253	0.11697	6.1385E-05	0.62333	0.00032712	0.7403	0.00038851	524.798985588263	27.973	0.24594	27.973	27.88	28.126	0					9	5	3	0	0	0	0.40353	1	10190	10190		26.693	0	1	105800			11251	2254	7182	7215	11419	11419					0.060639674286903755
FLSGEGDLSR	10	Unmodified	_FLSGEGDLSR_					0	0	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7738647460938	2	540.769645	1079.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.572	1	41.572	41.072	42.072	0								0	0	0	0.30854	1	16545	16545		49.536	0.094497	1				11252	1390;243	7183	7216	11420	11420					-0.011843392873970515
FLSNLDRII	9	Unmodified	_FLSNLDRII_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8190307617188	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.356	1	45.356	44.856	45.856	0								0	0	0	0.27939	1	18163	18163		24.203	0	1		+		11253	13482	7184	7217	11421	11421					0.07702004885709357
FLSQVMSKL	9	Unmodified	_FLSQVMSKL_					0	0	0			REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24	REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.796875	2	526.794078	1051.5736	0.26057	0.00013727	3.4977	0.0018426	3.7583	0.0019798	526.7958263354599	31.422	0.19745	31.422	31.316	31.513	0					7	4	2	0	0	0	0.3269	1	11854	11854		47.96	1.9873	1	212160	+		11254	17351	7185	7218	11422	11422					0.04987857748028546
FLSRLAIGA	9	Unmodified	_FLSRLAIGA_					0	0	0			REV__nc|ENSG00000114859|P51788-4|CLCN2	REV__nc|ENSG00000114859|P51788-4|CLCN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.28863525390625	2	474.287277	946.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.439	1	20.439	19.939	20.939	0								0	0	0	0.14517	1	5708	5708		60.972	2.19	1		+		11255	14087	7186	7219	11423	11423					0.08458368031085683
FLSSYWER	8	Unmodified	_FLSSYWER_					0	0	0			REV__GANC|p.A495V|1|0.19|ENSG00000214013|chr15:42327426-42327426|C/T|missense_variant	REV__GANC|p.A495V|1|0.19|ENSG00000214013|chr15:42327426-42327426|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2644653320312	2	544.263999	1086.51345	0.36624	0.00019933	0.75023	0.00040833	1.1165	0.00060766	544.264326139751	11.861	0.47958	11.861	11.735	12.215	0					47	16	5	0	0	0	0.73426	1	2362	2362		29.15	0	1	2413500	+		11256	17576	7187	7220	11424	11424					-0.026351165908636176
FLTALAGA	8	Unmodified	_FLTALAGA_					0	0	0		ENSG00000161634|ENST00000293371|DCD;DCD|p.G79Dfs*5|1|0.43|ENSG00000161634|chr12:54645226-54645226|C/-|frameshift_variant;nc|ENSG00000161634|P81605-2|DCD;nc|ENSG00000161634|P81605-3|DCD	ENSG00000161634|ENST00000293371|DCD	ENSG00000161634|ENST00000293371|DCD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.220703125	2	382.221072	762.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.192	1	34.192	33.692	34.692	0								0	0	0	1.7419	1	12080	12080		52.299	7.7681	1				11257	5415	7188	7221	11425	11425					0.0368734329426843
FLTGRIVY	8	Unmodified	_FLTGRIVY_					0	0	0		PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1;PER1|p.L380Cfs*73|1|0.18|ENSG00000179094|chr17:8148093-8148093|G/-|frameshift_variant;PER1|p.L466*|1|0.14|ENSG00000179094|chr17:8147571-8147571|G/-|frameshift_variant;ENST00000579065.1_1_17:8052750-8054072:-|nuORF	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7783508300781	2	484.781828	967.549102	-2.9159	-0.0014136	-3.1026	-0.0015041	-6.0186	-0.0029177	484.780664327736	36.418	0.1294	36.418	36.308	36.437	0					7	5	2	0	0	0	0.70055	1	13032	13032		33.516	4.366	1	41980			11258	6755	7189	7222	11426	11426					0.06402965656786819
FLTGSLSGVL	10	Unmodified	_FLTGSLSGVL_					0	0	0			REV__tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	REV__tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.28399658203125	2	497.2844	992.554247	0.99399	0.0004943	-1.8752	-0.0009325	-0.88119	-0.0004382	497.28346925570787	34.434	0.21115	34.434	34.327	34.538	0					8	4	2	0	0	0	0.46215	1	13209	13209		49.442	1.7842	1	314820	+		11259	21670	7190	7223	11427	11427					0.057672247287769096
FLTHMFCTF	9	Unmodified	_FLTHMFCTF_					0	0	0		nc|ENSG00000065675|Q04759-3|PRKCQ;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ	nc|ENSG00000065675|Q04759-3|PRKCQ	nc|ENSG00000065675|Q04759-3|PRKCQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.8405456542969	3	382.841879	1145.50381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.484	1	31.484	30.984	31.984	0								0	0	0	0.22284	1	11876	11876		47.657	10.498	1				11260	1379	7191	7224	11428	11428					-0.0631234419224711
FLTIVCMEE	9	Oxidation (M)	_FLTIVCM(Oxidation (M))EE_		FLTIVCM(1)EE		FLTIVCM(41)EE	0	0	1		ENST00000600463.1_1_19:18285864-18288180:+|nuORF;ENSG00000216490|ENST00000407280|IFI30	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.7542114257812	2	550.753761	1099.49297	1.6684	0.00091886	-0.95664	-0.00052687	0.71173	0.00039199	550.7533319612828	22.853	0.31808	22.853	22.693	23.012	0					14	6	4	0	0	0	0.41354	1	7831	7831		40.573	40.573	1	905010			11261	7839	7192	7225	11429	11429		315			-0.05279791357202157
FLTPQTVLKQ	10	Unmodified	_FLTPQTVLKQ_					0	0	0			REV__ENST00000448213.2_1_1:81967523-81968357:+|nuORF	REV__ENST00000448213.2_1_1:81967523-81968357:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.844970703125	2	587.845156	1173.67576	3.1917	0.0018762	-2.913	-0.0017124	0.27874	0.00016386	587.8435149480296	42.45	0.18291	42.45	42.398	42.581	0					6	5	2	0	0	0	0.57211	1	16960	16960		19.104	0	1	49560	+		11262	19293	7194	7226	11430	11430					0.09586847091259187
FLTPSPTKR	9	Unmodified	_FLTPSPTKR_					0	0	0		nc|ENSG00000090565|O75154-2|RAB11FIP3;ENSG00000090565|ENST00000262305|RAB11FIP3	nc|ENSG00000090565|O75154-2|RAB11FIP3	nc|ENSG00000090565|O75154-2|RAB11FIP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.53778076171875	3	349.537953	1045.59203	0.40805	0.00014263	-0.72094	-0.000252	-0.31288	-0.00010937	349.5376609888769	22.36	0.1655	22.36	22.279	22.445	0					8	4	2	0	0	0	0.55379	1	6324	6324		26.693	6.6961	1	59137			11263	1838	7195	7227	11431	11431					0.07105735714230832
FLTYMCLTI	9	Unmodified	_FLTYMCLTI_					0	0	0			REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4	REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2827758789062	2	552.777039	1103.53953	3.6553	0.0020205	3.3313	0.0018415	6.9865	0.003862	553.2802977978508	33.084	0.24362	33.084	32.988	33.232	0					12	5	3	0	0	0	0.1424	1	12551	12551		53.351	8.9743	1	720250	+		11264	13618	7196	7228	11432	11432					-0.008103067352521975
FLVAAVSG	8	Unmodified	_FLVAAVSG_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	382.2209167480469	2	382.221072	762.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.182	1	34.182	33.682	34.682	0								0	0	0	1.7419	1	11164	11164		44.531	7.5026	1		+		11265	17527	7197	7229	11433	11433					0.03687343294279799
FLVGQDNGP	9	Unmodified	_FLVGQDNGP_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7337951660156	2	473.735074	945.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.302	1	15.302	14.802	15.802	0								0	0	0	0.27025	1	3923	3923		40.778	0.20554	1				11266	7832	7198	7230	11434	11434					-0.019313785162921704
FLVIGSAG	8	Unmodified	_FLVIGSAG_					0	0	0		ENST00000600078.5_1_19:41284205-41286153:+|nuORF;ENST00000602069.5_1_19:41284205-41289930:+|nuORF;ENSG00000167578|ENST00000357052|RAB4B;nc|ENSG00000167578|P61018-2|RAB4B;ENST00000597476.5_1_19:41285769-41292865:+|nuORF	ENST00000600078.5_1_19:41284205-41286153:+|nuORF	ENST00000600078.5_1_19:41284205-41286153:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.2213134765625	2	382.221072	762.42759	0.83279	0.00031831	-0.58156	-0.00022229	0.25123	9.6026E-05	382.22083235318115	34.417	0.21076	34.417	34.334	34.545	0					9	5	2	0	0	0	0.55361	1	12811	12811		54.765	0	1	232520			11267	6002	7199	7231	11435	11435					0.03687343294279799
FLVLASCR	8	Unmodified	_FLVLASCR_					0	0	0		ENST00000526269.2_1_11:128561788-128562594:-|nuORF	ENST00000526269.2_1_11:128561788-128562594:-|nuORF	ENST00000526269.2_1_11:128561788-128562594:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.7557373046875	2	454.754756	907.494958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.577	1	13.577	13.077	14.077	0								0	0	0	1.7419	1	3185	3185		19.36	1.0356	1				11268	10376	7200	7232	11436	11436					0.03751050233586284
FLVMPIGTY	9	Oxidation (M)	_FLVM(Oxidation (M))PIGTY_		FLVM(1)PIGTY		FLVM(60)PIGTY	0	0	1		nc|ENSG00000120907|P35348-7|ADRA1A	nc|ENSG00000120907|P35348-7|ADRA1A	nc|ENSG00000120907|P35348-7|ADRA1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7774047851562	2	528.775354	1055.53615	3.4597	0.0018294	0.76247	0.00040318	4.2221	0.0022326	528.775619402968	33.424	0.4688	33.424	33.215	33.684	0					21	9	3	0	0	0	0.21116	1	12690	12690		60.294	10.269	1	1589400			11269	11501	7201	7233	11437	11437		446			0.010607664823965024
FLVYNIMSP	9	Unmodified	_FLVYNIMSP_					0	0	0			REV__ZNF350|p.V520M|1|0.33|ENSG00000256683|chr19:51964895-51964895|C/T|missense_variant	REV__ZNF350|p.V520M|1|0.33|ENSG00000256683|chr19:51964895-51964895|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2832641601562	2	542.280803	1082.54705	3.5842	0.0019437	1.5111	0.00081945	5.0953	0.0027631	542.2812372228493	36.15	0.81513	36.15	35.898	36.713	0					41	16	4	0	0	0	0.20551	1	14011	14011		60.972	0	1	1313100	+		11270	22319	7202	7234	11438	11438					0.009081688566766388
FLYILEPLGV	10	Unmodified	_FLYILEPLGV_					0	0	0			REV__ENST00000392028.8_2_19:40947168-40947366:-|nuORF	REV__ENST00000392028.8_2_19:40947168-40947366:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.3367309570312	2	582.339175	1162.6638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.003	1	33.003	32.503	33.503	0								0	0	0	0.4201	1	11539	11539		17.365	0.89182	1		+		11271	18816	7203	7235	11439	11439					0.08897230348065932
FLYIYDEQGK	10	Unmodified	_FLYIYDEQGK_					0	0	0			REV__ENSG00000213160|ENST00000392647|KLHL23	REV__ENSG00000213160|ENST00000392647|KLHL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	638.3155517578125	2	638.316428	1274.6183	-0.76497	-0.0004883	-1.9666	-0.0012553	-2.7316	-0.0017436	638.3151016365566	23.603	0.541	23.603	23.485	24.026	0					38	19	3	0	0	0	0.70877	1	7097	7097		20.947	0.95016	1	171170	+		11272	17557	7204	7236	11440	11440					-0.008020399049883054
FLYLMFLK	8	Oxidation (M)	_FLYLM(Oxidation (M))FLK_		FLYLM(1)FLK		FLYLM(47)FLK	0	0	1		ENST00000467238.1_1_7:127631037-127637644:+|nuORF	ENST00000467238.1_1_7:127631037-127637644:+|nuORF	ENST00000467238.1_1_7:127631037-127637644:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.802001953125	2	545.803914	1089.59328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.477	1	20.477	19.977	20.977	0								0	0	0	1.7419	1	5487	5487		46.766	9.6073	1				11273	9798	7205	7237	11441	11441		395			0.052062337587585716
FMAYLYPLQ	9	Unmodified	_FMAYLYPLQ_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;DENND3|p.L310Sfs*31|1|0.4|ENSG00000105339|chr8:141155938-141155938|C/-|frameshift_variant	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.2870483398438	2	573.288628	1144.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.223	1	22.223	21.723	22.723	0								0	0	0	0.35507	1	6507	6507		24.203	0	1				11274	2345	7206	7238	11442	11442					-0.0037954462629841146
FMGPRWRRRWF	11	Unmodified	_FMGPRWRRRWF_					0	0	0		CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant;CNKSR1|p.P512Hfs*58|2|0.35|ENSG00000142675|chr1:26188287-26188287|C/-|frameshift_variant;CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1	CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2803344726562	3	532.282335	1593.82517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.428	1	24.428	23.928	24.928	0								0	0	0	0.45674	1	7209	7209		19.263	13.262	1				11275	570	7207	7239	11443	11443					0.05201513952874848
FMHICDNVIT	10	Oxidation (M)	_FM(Oxidation (M))HICDNVIT_		FM(1)HICDNVIT		FM(57)HICDNVIT	0	0	1			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.7766723632812	2	604.775559	1207.53657	3.015	0.0018234	-0.79721	-0.00048213	2.2178	0.0013413	604.7752275673462	44.61	0.48872	44.61	44.448	44.936	0					45	20	3	0	0	0	0.39566	1	17843	17843		56.721	8.7615	1	164880	+		11276	15617	7208	7240	11444	11444		601			-0.058901818600816114
FMKTKTVSLQ	10	Unmodified	_FMKTKTVSLQ_					0	0	0		ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9;SLC26A9|p.T608Pfs*62|1|0.36|ENSG00000174502|chr1:205921800-205921800|G/-|frameshift_variant	ENSG00000174502|ENST00000367135|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	591.8298950195312	2	591.831191	1181.64783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.353	1	43.353	42.853	43.853	0								0	0	0	0.28704	1	13690	13690		52.937	10.072	1				11277	6493	7209	7241	11445	11445					0.06427200839539182
FMPLEVKK	8	Unmodified	_FMPLEVKK_					0	0	0		ENST00000412830.7_1_12:108104209-108104269:+|nuORF	ENST00000412830.7_1_12:108104209-108104269:+|nuORF	ENST00000412830.7_1_12:108104209-108104269:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.28204345703125	2	496.285889	990.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.973	1	14.973	14.473	15.473	0								0	0	0	1.7419	1	3268	3268		55.504	0.72789	1				11278	9323	7210	7242	11446	11446					0.0615677658192908
FMPYRPVV	8	Unmodified	_FMPYRPVV_					0	0	0		GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion;ENSG00000168505|ENST00000306318|GBX2	GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion	GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7713623046875	2	504.770406	1007.52626	1.0411	0.0005255	0.1817	9.1715E-05	1.2228	0.00061722	504.77052021924874	40.135	0.25274	40.135	40.048	40.301	0					13	9	2	0	0	0	0.6282	1	15808	15808		44.531	7.5026	1	140460			11279	6099	7211	7243	11447	11447					0.022796232676796535
FNCDLIDSVD	10	Unmodified	_FNCDLIDSVD_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7496948242188	2	570.747521	1139.48049	3.4147	0.001949	0.47124	0.00026896	3.886	0.0022179	570.7477237385966	17.167	0.27033	17.167	17.056	17.326	0					12	5	4	0	0	0	0.39647	1	4911	4911		44.377	5.1244	1	2241100			11280	9294	7212	7244	11448	11448					-0.08367111495886093
FNDPNAKEM	9	Oxidation (M)	_FNDPNAKEM(Oxidation (M))_		FNDPNAKEM(1)		FNDPNAKEM(120)	0	0	1		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2350463867188	2	541.234581	1080.45461	1.0436	0.00056482	-0.028036	-1.5174E-05	1.0155	0.00054965	541.2345425559224	19.428	0.19743	19.428	19.327	19.525	0					15	6	3	0	0	0	0.021015	1	5019	5019		120.31	120.31	1	262540			11281	1288	7213	7245	11449	11449		62			-0.08239960947503278
FNDPNAKEM	9	Oxidation (M)	_FNDPNAKEM(Oxidation (M))_		FNDPNAKEM(1)		FNDPNAKEM(160)	0	0	1		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2349243164062	2	541.234581	1080.45461	0.28955	0.00015672	0.30077	0.00016279	0.59032	0.0003195	541.2348342069569	19.743	0.78586	19.743	19.647	20.433	0					26	17	4	0	0	0	0.0055674	1	6017	6017		155.58	70.669	1	1728000			11282	1288	7213	7245	11450	11450		62			-0.08239960947503278
FNDPNAKEM	9	Oxidation (M)	_FNDPNAKEM(Oxidation (M))_		FNDPNAKEM(1)		FNDPNAKEM(110)	0	0	1		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2346801757812	2	541.234581	1080.45461	0.089039	4.8191E-05	1.393	0.00075395	1.4821	0.00080214	541.2351047987988	19.419	0.14259	19.419	19.349	19.492	0					10	4	3	0	0	0	0.029571	1	5259	5259		109.44	47.331	1	228440			11283	1288	7213	7245	11451	11451		62			-0.08239960947503278
FNDPNAKEM	9	Oxidation (M)	_FNDPNAKEM(Oxidation (M))_		FNDPNAKEM(1)		FNDPNAKEM(200)	0	0	1		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2349243164062	2	541.234581	1080.45461	2.0097	0.0010877	-1.4779	-0.00079988	0.53184	0.00028785	541.2339179368964	19.617	0.41657	19.617	19.511	19.927	0					18	8	3	0	0	0	3.3778E-05	1	6242	6242		199.89	109.11	1	2030800			11284	1288	7213	7245	11452	11452		62			-0.08239960947503278
FNDPNAKEM	9	Oxidation (M)	_FNDPNAKEM(Oxidation (M))_		FNDPNAKEM(1)		FNDPNAKEM(140)	0	0	1		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2361450195312	2	541.234581	1080.45461	-1.4835	-0.00080294	3.4571	0.0018711	1.9735	0.0010681	541.2364937385331	19.488	0.18741	19.488	19.386	19.573	0					11	4	3	0	0	0	0.0088974	1	5308	5308		143.37	66.599	1	235700			11285	1288	7213	7245	11453	11453		62			-0.08239960947503278
FNDPNAKEM	9	Unmodified	_FNDPNAKEM_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2373657226562	2	533.237124	1064.45969	0.44531	0.00023746	-0.074688	-3.9826E-05	0.37063	0.00019763	533.2371494128516	25.612	0.51394	25.612	25.492	26.006	0					39	13	5	0	0	0	0.00065248	1	7713	7713		186.41	95.634	1	4016400			11286	1288	7213	7246	11454	11454					-0.06995657084894447
FNDPNAKEM	9	Unmodified	_FNDPNAKEM_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.237060546875	2	533.237124	1064.45969	0.13944	7.4355E-05	-0.15037	-8.0182E-05	-0.010926	-5.8264E-06	533.2370747508393	25.871	0.63462	25.871	25.692	26.326	0					36	13	6	0	0	0	0.0021879	1	8856	8856		173.39	77.202	1	25064000			11287	1288	7213	7246	11455	11455					-0.06995657084894447
FNDPNAKEM	9	Unmodified	_FNDPNAKEM_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2374267578125	2	533.237124	1064.45969	0.23945	0.00012768	0.034032	1.8147E-05	0.27348	0.00014583	533.2372259213854	25.65	0.24078	25.65	25.52	25.76	0					22	7	4	0	0	0	0.0030642	1	7994	7994		168.26	60.171	1	2433800			11288	1288	7213	7246	11456	11456					-0.06995657084894447
FNDPNAKEM	9	Unmodified	_FNDPNAKEM_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.237060546875	2	533.237124	1064.45969	0.2896	0.00015443	-0.10288	-5.486E-05	0.18672	9.9566E-05	533.2370880454461	25.871	0.54174	25.871	25.721	26.263	0					25	9	5	0	0	0	0.00065248	1	9195	9195		186.41	98.656	1	15021000			11289	1288	7213	7246	11457	11457					-0.06995657084894447
FNELIIKR	8	Unmodified	_FNELIIKR_					0	0	0			REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.8151245117188	2	516.813659	1031.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.626	1	24.626	24.126	25.126	0								0	0	0	1.7419	1	7561	7561		44.117	0	1		+		11290	21733	7214	7247	11458	11458					0.09822326093922129
FNFGTTSEDFR	11	Unmodified	_FNFGTTSEDFR_					0	0	0			REV__RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	REV__RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	660.7943115234375	2	660.796392	1319.57823	-2.4534	-0.0016212	-1.015	-0.00067069	-3.4683	-0.0022919	660.7958699754437	27.329	0.25887	27.329	27.235	27.494	0					14	6	4	0	0	0	0.16685	1	8930	8930		78.264	30.304	1	702080	+		11291	17019	7215	7248	11459	11459					-0.0687758657552422
FNFILNTI	8	Unmodified	_FNFILNTI_					0	0	0			REV__nc|ENSG00000014123|O94874-2|UFL1	REV__nc|ENSG00000014123|O94874-2|UFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.27325439453125	2	491.273835	980.533118	-0.56381	-0.00027699	0.29116	0.00014304	-0.27265	-0.00013395	491.2740244824263	39.181	0.15113	39.181	39.079	39.23	0					8	3	3	0	0	0	0.6088	1	15452	15452		47.657	0	1	215600	+		11292	12920	7216	7249	11460	11460					0.04207259419922593
FNFVRRIFP	9	Unmodified	_FNFVRRIFP_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1;TENM1|p.L1382Ffs*3|1|0.63|ENSG00000009694|chrX:124422576-124422577|-/A|frameshift_variant;TENM1|p.M1863Wfs*25|1|0.38|ENSG00000009694|chrX:124392132-124392132|T/-|frameshift_variant	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.2287902832031	3	399.229342	1194.6662	-0.62	-0.00024752	-0.52163	-0.00020825	-1.1416	-0.00045577	399.2290343556162	32.076	0.36855	32.076	31.918	32.287	0					12	7	2	0	0	0	0.55379	1	12046	12046		26.693	3.1702	1	295940			11293	1026	7217	7250	11461	11461					0.07665123596393641
FNGEQPAL	8	Unmodified	_FNGEQPAL_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.218017578125	2	438.216517	874.418482	3.172	0.00139	-0.076472	-3.3511E-05	3.0955	0.0013565	438.2166347646464	36.358	0.19741	36.358	36.265	36.462	0					15	10	2	0	0	0	0.68432	1	12298	12298		35.618	35.618	1	92776	+		11294	14532	7218	7251	11462	11462					-0.023750500620622006
FNGNEKRY	8	Unmodified	_FNGNEKRY_					0	0	0			REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2514038085938	2	514.251423	1026.48829	0.11929	6.1344E-05	-0.069927	-3.596E-05	0.049361	2.5384E-05	514.2513010123897	25.064	0.61935	25.064	24.963	25.582	0					31	12	3	0	0	0	0.68432	1	8865	8865		35.618	2.1027	1	610070	+		11295	22058	7219	7252	11463	11463					-0.023891713934290237
FNKTEDDII	9	Unmodified	_FNKTEDDII_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.5173645019531	3	365.516995	1093.52915	1.029	0.00037611	0.054559	1.9942E-05	1.0835	0.00039605	365.51701378494494	24.422	1.2018	24.422	24.312	25.514	0					46	24	4	0	0	0	0.50461	1	8432	8432		31.53	2.3598	1	4640300			11296	1376	7220	7253	11464	11464					-0.01386874864465426
FNLIFINVL	9	Unmodified	_FNLIFINVL_					0	0	0		ENST00000477543.1_1_15:59971734-59981480:-|nuORF	ENST00000477543.1_1_15:59971734-59981480:-|nuORF	ENST00000477543.1_1_15:59971734-59981480:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.8849792480469	3	364.886582	1091.63792	-2.0641	-0.00075315	-2.1718	-0.00079246	-4.2359	-0.0015456	364.8857624105155	30.861	0.16001	30.861	30.786	30.946	0					5	4	2	0	0	0	0.48389	1	10567	10567		34.173	6.0911	1	64358			11297	9923	7221	7254	11465	11465					0.09576380896464798
FNLLAKFAL	9	Unmodified	_FNLLAKFAL_					0	0	0			REV__TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant	REV__TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.211181640625	3	346.211177	1035.6117	0.5176	0.0001792	-0.45531	-0.00015763	0.062292	2.1566E-05	346.2110271943236	35.171	0.51863	35.171	35.052	35.571	0					34	14	4	0	0	0	0.61124	1	13583	13583		9.1829	0	1	1026200	+		11298	13519	7222	7255	11466	11466					0.09532111724979586
FNLMRKLA	8	Unmodified	_FNLMRKLA_					0	0	0			REV__SCFD1|p.N36Kfs*14|1|0.22|ENSG00000092108|chr14:30628249-30628250|-/A|frameshift_variant	REV__SCFD1|p.N36Kfs*14|1|0.22|ENSG00000092108|chr14:30628249-30628250|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.789794921875	2	496.78913	991.563706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.648	1	19.648	19.148	20.148	0								0	0	0	1.7419	1	5122	5122		35.201	1.0282	1		+		11299	13450	7223	7256	11467	11467					0.06758714533282273
FNLTVKGHAK	10	Unmodified	_FNLTVKGHAK_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7569580078125	2	557.822015	1113.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.694	1	11.694	11.194	12.194	0								0	0	0	0.41767	1	2305	2305		19.997	10.291	1				11300	7383	7224	7257	11468	11468					0.0772082697985752
FNNVKKVN	8	Unmodified	_FNNVKKVN_					0	0	0			REV__TTK|p.S162Vfs*9|1|0.34|ENSG00000112742|chr6:80010822-80010822|A/-|frameshift_variant	REV__TTK|p.S162Vfs*9|1|0.34|ENSG00000112742|chr6:80010822-80010822|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7740478515625	2	481.774534	961.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.662	1	30.662	30.162	31.162	0								0	0	0	1.7419	1	10094	10094		35.201	1.6851	1		+		11301	22245	7225	7258	11469	11469					0.05220893508658264
FNQHDGTL	8	Unmodified	_FNQHDGTL_					0	0	0			REV__ENST00000350025.2_1_5:132009789-132015413:+|nuORF	REV__ENST00000350025.2_1_5:132009789-132015413:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.21661376953125	2	466.217049	930.419545	-2.2625	-0.0010548	1.7363	0.00080948	-0.52624	-0.00024534	466.217773932175	30.632	0.26041	30.632	30.533	30.793	0					12	7	2	0	0	0	0.64096	1	10485	10485		42.474	3.6683	1	103530	+		11302	18494	7226	7259	11470	11470					-0.04844835693143068
FNQPGGRGP	9	Unmodified	_FNQPGGRGP_					0	0	0			REV__ENST00000336798.11_2_1:31350222-31350498:-|nuORF	REV__ENST00000336798.11_2_1:31350222-31350498:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.23272705078125	2	465.233033	928.451513	0.67814	0.0003155	-1.4832	-0.00069003	-0.80504	-0.00037453	465.23251817277315	19.372	2.0096	19.372	19.264	21.273	0					98	40	4	0	0	0	0.50461	1	6365	6365		31.955	1.4512	1	44271000	+		11303	18417	7227	7260	11471	11471					-0.01557423219321663
FNQPHYPSI	9	Unmodified	_FNQPHYPSI_					0	0	0			REV__HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|18|3|sense	REV__HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|18|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7698364257812	2	551.769448	1101.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.124	1	43.124	42.624	43.624	0								0	0	0	0.21054	1	17249	17249		49.442	3.4896	1		+		11304	20742	7228	7261	11472	11472					-0.022357142165674304
FNQSSTLTI	9	Unmodified	_FNQSSTLTI_					0	0	0		ENSG00000183850|ENST00000597761|ZNF730	ENSG00000183850|ENST00000597761|ZNF730	ENSG00000183850|ENST00000597761|ZNF730	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2642517089844	2	505.761289	1009.50803	1.2458	0.00063006	-0.57336	-0.00028999	0.67239	0.00034007	505.76084503259904	37.456	1.0304	37.456	37.008	38.039	0					89	21	6	0	0	0	0.1115	1	14514	14514		76.774	4.8967	1	26712000			11305	6987	7229	7262	11473	11473					0.0036515982668561264
FNRWWWRYDEA	11	Unmodified	_FNRWWWRYDEA_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	814.8760986328125	2	814.873299	1627.73205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.849	1	49.849	49.349	50.349	0								0	0	0	0.45674	1	19701	19701		5.2201	2.2907	1		+		11306	13598	7230	7263	11474	11474					-0.05671132019324432
FNSSKSPKVSL	11	Unmodified	_FNSSKSPKVSL_					0	0	0		ENST00000513347.1_1_17:46972190-46972301:+|nuORF	ENST00000513347.1_1_17:46972190-46972301:+|nuORF	ENST00000513347.1_1_17:46972190-46972301:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.3319091796875	2	597.32987	1192.64519	3.1644	0.0018902	0.3557	0.00021247	3.5201	0.0021027	597.3299562528862	43.697	0.30814	43.697	43.617	43.925	0					16	9	3	0	0	0	0.44903	1	17485	17485		47.96	3.5823	1	405810			11307	10247	7231	7264	11475	11475					0.056570687062503566
FNSVLSSLNP	10	Unmodified	_FNSVLSSLNP_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2843017578125	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.026	1	39.026	38.526	39.526	0								0	0	0	0.38093	1	15334	15334		36.318	2.1451	1		+		11308	13580	7232	7265	11476	11476					0.01501135235048423
FNTVSHEKY	9	Unmodified	_FNTVSHEKY_					0	0	0		CFAP54|p.R1777K|1|0.24|ENSG00000188596|chr12:96658216-96658216|G/A|missense_variant	CFAP54|p.R1777K|1|0.24|ENSG00000188596|chr12:96658216-96658216|G/A|missense_variant	CFAP54|p.R1777K|1|0.24|ENSG00000188596|chr12:96658216-96658216|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7725830078125	2	562.772188	1123.52982	1.8624	0.0010481	-0.78396	-0.00044119	1.0784	0.0006069	562.7715783233436	38.042	0.15044	38.042	37.931	38.081	0					8	5	2	0	0	0	0.51991	1	14914	14914		30.318	0	1	75742			11309	495	7233	7266	11477	11477					-0.027000354247547875
FNVAVDEFI	9	Unmodified	_FNVAVDEFI_					0	0	0			REV__ENST00000344893.4_1_19:11759178-11789136:+|nuORF	REV__ENST00000344893.4_1_19:11759178-11789136:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2655639648438	2	527.266207	1052.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.807	1	42.807	42.307	43.307	0								0	0	0	0.22284	1	17107	17107		47.657	1.7054	1		+		11310	18478	7234	7267	11478	11478					-0.006296521679587386
FNVFFNCL	8	Carbamidomethyl (C)	_FNVFFNC(Carbamidomethyl (C))L_	FNVFFNC(1)L		FNVFFNC(48)L		0	1	0			REV__ENSG00000174721|ENST00000311575|FGFBP3	REV__ENSG00000174721|ENST00000311575|FGFBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.749755859375	2	530.74967	1059.48479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.275	1	28.275	27.775	28.775	0								0	0	0	1.7419	1	9363	9363		47.916	7.1374	1		+		11311	16579	7235	7268	11479	11479	589				-0.042575574916554615
FNWKIWPRWRT	11	Unmodified	_FNWKIWPRWRT_					0	0	0		ENST00000540171.2_1_14:105147650-105150445:+|nuORF	ENST00000540171.2_1_14:105147650-105150445:+|nuORF	ENST00000540171.2_1_14:105147650-105150445:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.6238403320312	3	530.621122	1588.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.459	1	32.459	31.959	32.959	0								0	0	0	0.45674	1	12241	12241		17.167	4.7339	1				11312	10529	7236	7269	11480	11480					0.07066918390614774
FNWVVLTQL	9	Unmodified	_FNWVVLTQL_					0	0	0			REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant	REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.3120727539062	2	560.313492	1118.61243	-0.85872	-0.00048115	-1.0876	-0.0006094	-1.9463	-0.0010906	560.3129715900151	39.683	0.16671	39.683	39.596	39.763	0					13	8	2	0	0	0	0.30841	1	14141	14141		34.173	0	1	52204	+		11313	13683	7237	7270	11481	11481					0.057869063740326965
FPAAPAPKM	9	Unmodified	_FPAAPAPKM_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2498779296875	2	465.249306	928.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.372	1	32.372	31.872	32.872	0								0	0	0	0.13522	1	10462	10462		63.306	18.775	1				11314	5595	7238	7271	11482	11482					0.01695647859287419
FPAAPAPKM	9	Unmodified	_FPAAPAPKM_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7508239746094	2	465.249306	928.484059	0.16158	7.5176E-05	0.49684	0.00023115	0.65842	0.00030633	465.2493415588211	32.623	0.344	32.623	32.393	32.737	0					12	8	2	0	0	0	0.11118	1	12015	12015		76.847	22.082	1	99678			11315	5595	7238	7271	11483	11483					0.01695647859287419
FPAGKVPAF	9	Unmodified	_FPAGKVPAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.R51C|1|0.3|ENSG00000254772|chr11:62572604-62572604|G/A|missense_variant	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2627258300781	2	467.263271	932.511988	0.62003	0.00028972	-1.4636	-0.00068387	-0.84354	-0.00039416	467.2620582503312	38.973	0.89938	38.973	38.627	39.526	0					34	19	2	0	0	0	0.30268	1	15487	15487		50.025	5.4935	1	159900			11316	8013	7239	7272	11484	11484					0.043032941110254797
FPAGTTIGAPK	11	Unmodified	_FPAGTTIGAPK_					0	0	0			REV__ENST00000426414.6_1_4:85730999-85781744:-|nuORF	REV__ENST00000426414.6_1_4:85730999-85781744:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2947387695312	2	530.295299	1058.57605	1.2055	0.00063926	-3.0899	-0.0016386	-1.8844	-0.00099931	530.2936045197434	16.355	0.29895	16.355	16.228	16.527	0					11	8	2	0	0	0	0.22009	1	3864	3864		71.877	0.58177	1	210470	+		11317	15900	7240	7273	11485	11485					0.04910029477309763
FPAMKPEDK	9	Unmodified	_FPAMKPEDK_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7703247070312	2	531.76806	1061.52157	1.7172	0.00091317	1.895	0.0010077	3.6122	0.0019209	531.76951434748	37.95	0.23523	37.95	37.846	38.081	0					14	8	2	0	0	0	0.14603	1	14869	14869		68.787	2.9837	1	185940			11318	1371	7241	7274	11486	11486					-0.006733056657594716
FPANIQVVY	9	Unmodified	_FPANIQVVY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7825927734375	2	525.784567	1049.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.618	1	48.618	48.118	49.118	0								0	0	0	0.27166	1	19306	19306		40.573	1.3198	1				11319	4109	7242	7275	11487	11487					0.03178644448621526
FPANNIVKF	9	Unmodified	_FPANNIVKF_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.29345703125	2	525.292559	1048.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.399	1	42.399	41.899	42.899	0								0	0	0	0.072369	1	16919	16919		63.306	5.495	1				11320	3396	7243	7276	11488	11488					0.04822350685503807
FPANNIVKF	9	Unmodified	_FPANNIVKF_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2927856445312	2	525.292559	1048.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.833	1	42.833	42.333	43.333	0								0	0	0	0.25587	1	17118	17118		44.117	5.3107	1				11321	3396	7243	7276	11489	11489					0.04822350685503807
FPANRSGKGF	10	Unmodified	_FPANRSGKGF_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7819213867188	2	540.78289	1079.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.758	1	45.758	45.258	46.258	0								0	0	0	0.34115	1	18333	18333		44.377	3.599	1		+		11322	17315	7244	7277	11490	11490					0.014633943946137151
FPASANHADM	10	Unmodified	_FPASANHADM_					0	0	0			REV__SLC10A1|p.E2D|1|0.1|ENSG00000100652|chr14:69797150-69797150|C/A|missense_variant	REV__SLC10A1|p.E2D|1|0.1|ENSG00000100652|chr14:69797150-69797150|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.7327270507812	2	530.729466	1059.44438	1.1033	0.00058553	3.1236	0.0016578	4.2268	0.0022433	530.7314362489242	31.096	0.28138	31.096	30.879	31.161	0					17	11	2	0	0	0	0.66185	1	9921	9921		26.693	1.1189	1	67936	+		11323	21520	7245	7278	11491	11491					-0.08296523882086149
FPASSGVSH	9	Unmodified	_FPASSGVSH_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.7145080566406	2	444.714142	887.413731	3.2432	0.0014423	-3.3674	-0.0014975	-0.12413	-5.5201E-05	444.71236572604306	21.525	0.19505	21.525	21.462	21.657	0					9	6	2	0	0	0	0.47038	1	6205	6205		35.618	0.41757	1	42606			11324	5357	7246	7279	11492	11492					-0.03447934204803005
FPASSGVSH	9	Unmodified	_FPASSGVSH_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7140197753906	2	444.714142	887.413731	-0.20291	-9.0237E-05	-0.40617	-0.00018063	-0.60908	-0.00027087	444.71393101357194	21.683	1.3021	21.683	21.625	22.927	0					54	26	3	0	0	0	0.018419	1	7238	7238		124.59	66.783	1	278660			11325	5357	7246	7279	11493	11493					-0.03447934204803005
FPASSGVSH	9	Unmodified	_FPASSGVSH_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.71405029296875	2	444.714142	887.413731	-0.47164	-0.00020974	-0.023101	-1.0273E-05	-0.49474	-0.00022002	444.7141073739581	21.717	1.4661	21.717	21.587	23.053	0					58	29	3	0	0	0	0.05357	1	7116	7116		94.006	41.707	1	419240			11326	5357	7246	7279	11494	11494					-0.03447934204803005
FPCLWLGLL	9	Unmodified	_FPCLWLGLL_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.5328674316406	3	354.533263	1060.57796	-2.0102	-0.0007127	0.49284	0.00017473	-1.5174	-0.00053797	354.5334676136628	20.867	0.15142	20.867	20.768	20.919	0					5	3	2	0	0	0	0.53083	1	5940	5940		29.15	2.4566	1	154730			11327	4012	7247	7280	11495	11495					0.05009366961576234
FPCQHRKAAP	10	Unmodified	_FPCQHRKAAP_					0	0	0			REV__ENSG00000266265|ENST00000583337|KLF14	REV__ENSG00000266265|ENST00000583337|KLF14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.7979736328125	2	577.798017	1153.58148	1.4989	0.00086608	-1.6967	-0.00098037	-0.1978	-0.00011429	577.7965976700754	39.499	0.15669	39.499	39.434	39.591	0					13	6	3	0	0	0	0.52707	1	15042	15042		42.396	9.5837	1	98269	+		11328	17790	7248	7281	11496	11496					0.010834297881501698
FPDKPITQY	9	Unmodified	_FPDKPITQY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7884521484375	2	554.787307	1107.56006	1.4161	0.00078562	0.092768	5.1467E-05	1.5088	0.00083709	554.7873367957105	34.993	0.92246	34.993	34.544	35.467	0					82	42	2	0	0	0	0.46194	2	11578	11450;11578		36.447	7.2384	1	124850			11329	7963	7249	7282	11497;11498	11498					0.010583232404314913
FPDKPITQY	9	Unmodified	_FPDKPITQY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7879028320312	2	554.787307	1107.56006	1.8153	0.0010071	-0.88292	-0.00048983	0.93235	0.00051725	554.7866427341304	34.997	1.4134	34.997	34.731	36.144	0					117	37	4	0	0	0	0.054723	5	13187	13016;13187;13359;13495;13529		93.598	38.821	1	890790			11330	7963	7249	7282	11499;11500;11501;11502;11503	11500					0.010583232404314913
FPDKPITQY	9	Unmodified	_FPDKPITQY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.787353515625	2	554.787307	1107.56006	0.13894	7.7084E-05	0.18035	0.00010005	0.31929	0.00017714	554.7874608787865	35.074	0.95041	35.074	34.612	35.563	0					92	43	3	0	0	0	0.24334	1	11845	11845		56.434	6.9922	1	131440			11331	7963	7249	7282	11504	11504					0.010583232404314913
FPDKPITQY	9	Unmodified	_FPDKPITQY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7877807617188	2	554.787307	1107.56006	1.6505	0.0009157	-0.59862	-0.0003321	1.0519	0.00058359	554.786713828987	35.064	1.4215	35.064	34.727	36.148	0					123	41	4	0	0	0	0.04067	3	13834	13507;13669;13834		98.582	41.861	1	1050400			11332	7963	7249	7282	11505;11506;11507	11507					0.010583232404314913
FPDKPITQY	9	Unmodified	_FPDKPITQY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.2884521484375	2	554.787307	1107.56006	1.1354	0.00062988	-0.0076387	-4.2378E-06	1.1277	0.00062564	554.7872753197569	34.928	1.0832	34.928	34.568	35.651	0					80	37	3	0	0	0	0.10506	2	12297	12297;12455		78.264	31.563	1	120870			11333	7963	7249	7282	11508;11509	11508					0.010583232404314913
FPDKPITQY	9	Unmodified	_FPDKPITQY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7882690429688	2	554.787307	1107.56006	1.0086	0.00055955	-0.079984	-4.4374E-05	0.9286	0.00051517	554.7872112645153	35.041	1.2637	35.041	34.684	35.948	0					62	25	3	0	0	0	0.14578	3	13547	13381;13547;13719		68.846	21.189	1	265240			11334	7963	7249	7282	11510;11511;11512	11511					0.010583232404314913
FPDKPITQY	9	Unmodified	_FPDKPITQY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7877807617188	2	554.787307	1107.56006	1.8213	0.0010104	-0.8016	-0.00044472	1.0197	0.0005657	554.7866667443107	35.001	1.4134	35.001	34.668	36.081	0					96	28	4	0	0	0	0.02429	3	13563	13376;13563;13734		114.89	43.599	1	2150500			11335	7963	7249	7282	11513;11514;11515	11514					0.010583232404314913
FPDKVALLQ	9	Unmodified	_FPDKVALLQ_					0	0	0		ENST00000467061.1_1_3:185212881-185213145:-|nuORF;ENST00000475480.5_1_3:185199046-185216749:-|nuORF;TMEM41A|p.N197Kfs*31|1|0.08|ENSG00000163900|chr3:185491741-185491742|-/CAAGTACTGC|frameshift_variant;TMEM41A|p.K241Nfs*9|1|0.21|ENSG00000163900|chr3:185491609-185491609|T/-|frameshift_variant;ENSG00000163900|ENST00000421852|TMEM41A	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.80224609375	2	515.800217	1029.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.633	1	44.633	44.133	45.133	0								0	0	0	0.30504	1	17883	17883		34.173	0	1				11336	5620	7250	7283	11516	11516					0.07227217482704873
FPDNKQVIK	9	Unmodified	_FPDNKQVIK_					0	0	0			REV__ENSG00000117713|ENST00000324856|ARID1A	REV__ENSG00000117713|ENST00000324856|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.8088989257812	2	544.808574	1087.60259	1.1795	0.00064259	-0.29567	-0.00016108	0.88381	0.00048151	544.8083278827087	22.021	0.22274	22.021	21.942	22.165	0					15	6	3	0	0	0	0.47473	1	6165	6165		27.882	6.9353	1	256380	+		11337	12219	7251	7284	11517	11517					0.06229718368649628
FPDQLAEK	8	Unmodified	_FPDQLAEK_					0	0	0			REV__KHNYN|p.R415H|1|0.21|ENSG00000100441|chr14:24432505-24432505|G/A|missense_variant	REV__KHNYN|p.R415H|1|0.21|ENSG00000100441|chr14:24432505-24432505|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2453918457031	2	474.245275	946.475997	0.2809	0.00013322	-0.79837	-0.00037862	-0.51747	-0.00024541	474.2448370555557	41.745	0.31161	41.745	41.658	41.97	0					28	15	2	0	0	0	0.65148	1	15843	15843		40.778	1.5253	1	74673	+		11338	13555	7252	7285	11518	11518					0.0006179214352641793
FPDWREDVL	9	Unmodified	_FPDWREDVL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7913818359375	2	588.787838	1175.56112	1.3546	0.00079757	3.1969	0.0018823	4.5515	0.0026799	588.7908475895541	42.128	0.47623	42.128	41.942	42.418	0					31	12	3	0	0	0	0.38666	1	16760	16760		20.947	0	1	335360			11339	1542	7253	7286	11519	11519					-0.019634623906767956
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.7808837890625	2	578.779679	1155.5448	1.489	0.0008618	-0.80372	-0.00046518	0.68528	0.00039662	578.7794219412278	22.398	0.69709	22.398	22.318	23.015	0					24	21	2	0	0	0	0.18416	1	6337	6337		63.534	10.597	1	88474			11340	4958	7254	7287	11520	11520					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.7800903320312	2	578.779679	1155.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.178	1	23.178	22.678	23.678	0								0	0	0	0.26578	1	6668	6668		41.427	10.923	1				11341	4958	7254	7287	11521	11521					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.7802734375	2	578.779679	1155.5448	1.4611	0.00084568	-0.77701	-0.00044972	0.68413	0.00039596	578.779251816025	22.717	1.5403	22.717	22.604	24.144	0					83	36	3	0	0	0	0.0088974	1	7441	7441		143.37	66.056	1	647710			11342	4958	7254	7287	11522	11522					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.7798461914062	2	578.779679	1155.5448	-0.058474	-3.3844E-05	1.1787	0.00068222	1.1202	0.00064838	578.7800404910133	22.441	1.1669	22.441	22.326	23.493	0					95	38	4	0	0	0	0.0067848	2	6598	6598;6909		150.36	80.734	1	200380			11343	4958	7254	7287	11523;11524	11523					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.7799072265625	2	578.779679	1155.5448	1.6422	0.0009505	-0.90507	-0.00052384	0.73717	0.00042666	578.7789160615487	22.62	1.6121	22.62	22.501	24.113	0					92	32	5	0	0	0	0.0047071	2	7686	7686;7881		159.28	71.579	1	2245400			11344	4958	7254	7287	11525;11526	11525					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.18890380859375	3	386.188878	1155.5448	0.14129	5.4563E-05	-0.064608	-2.4951E-05	0.076679	2.9613E-05	386.18884508225625	22.614	2.0102	22.614	22.501	24.511	0					109	40	4	0	0	0	0.33044	1	7688	7688		54.722	21.972	1	1392600			11345	4958	7254	7287	11527	11527					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.7797241210938	2	578.779679	1155.5448	0.58305	0.00033746	0.094589	5.4746E-05	0.67764	0.0003922	578.7796033802778	22.535	1.0238	22.535	22.422	23.446	0					39	23	3	0	0	0	0.0059092	2	6718	6718;6903		154.12	71.878	1	202400			11346	4958	7254	7287	11528;11529	11528					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	386.1887512207031	3	386.188878	1155.5448	-0.14608	-5.6414E-05	0.20047	7.7419E-05	0.05439	2.1005E-05	386.18895820101676	22.547	0.50107	22.547	22.422	22.923	0					20	11	2	0	0	0	0.35045	1	6759	6759		52.937	17.758	1	122190			11347	4958	7254	7287	11530	11530					-0.02674588347417739
FPEEDKKTY	9	Unmodified	_FPEEDKKTY_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.1887512207031	3	386.188878	1155.5448	0.55441	0.00021411	-0.35845	-0.00013843	0.19597	7.568E-05	386.1886991115258	22.63	1.609	22.63	22.521	24.13	0					96	32	4	0	0	0	0.17854	1	7569	7569		70.816	41.646	1	1272600			11348	4958	7254	7287	11531	11531					-0.02674588347417739
FPEKGYSF	8	Unmodified	_FPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7337951660156	2	487.734543	973.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.171	1	36.171	35.671	36.671	0								0	0	0	1.7419	1	14032	14032		49.442	3.4896	1				11349	4994	7255	7288	11532	11532					-0.03325592885187234
FPESAHDPG	9	Unmodified	_FPESAHDPG_					0	0	0		BLCAP|p.L75F|1|0.09|ENSG00000166619|chr20:37518952-37518952|G/A|missense_variant	BLCAP|p.L75F|1|0.09|ENSG00000166619|chr20:37518952-37518952|G/A|missense_variant	BLCAP|p.L75F|1|0.09|ENSG00000166619|chr20:37518952-37518952|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7104187011719	2	478.709057	955.40356	2.2659	0.0010847	0.39187	0.00018759	2.6578	0.0012723	478.7093475847254	29.232	0.35977	29.232	29.126	29.485	0					20	7	4	0	0	0	0.35045	1	10694	10694		45.952	10.334	1	2574300			11350	302	7256	7289	11533	11533					-0.07592541930046082
FPESAVKVL	9	Unmodified	_FPESAVKVL_					0	0	0		ENSG00000144649|ENST00000430121|GASK1A	ENSG00000144649|ENST00000430121|GASK1A	ENSG00000144649|ENST00000430121|GASK1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2871398925781	2	495.286943	988.559333	2.831	0.0014022	-2.5227	-0.0012494	0.30838	0.00015274	495.28579304069484	43.993	0.15675	43.993	43.895	44.052	0					10	6	2	0	0	0	0.47038	1	17628	17628		35.618	0.41757	1	51913			11351	4628	7257	7290	11534	11534					0.0645952859136969
FPFEKGSVQY	10	Unmodified	_FPFEKGSVQY_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;DEK|p.E372Sfs*2|1|0.2|ENSG00000124795|chr6:18226177-18226177|T/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.2978515625	2	601.298039	1200.58152	0.046217	2.779E-05	0.52364	0.00031486	0.56986	0.00034265	601.298290607455	40.437	0.63037	40.437	40.104	40.735	0					19	14	2	0	0	0	0.36476	1	16036	16036		60.118	1.8883	1	48000			11352	767	7258	7291	11535	11535					-0.010742917308562028
FPFHEVTATH	10	Unmodified	_FPFHEVTATH_					0	0	0		nc|ENSG00000182362|P58557-2|YBEY	nc|ENSG00000182362|P58557-2|YBEY	nc|ENSG00000182362|P58557-2|YBEY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.2860107421875	2	593.288005	1184.56146	0.16712	9.9147E-05	-2.1503	-0.0012758	-1.9832	-0.0011766	593.2864291031481	35.589	0.16312	35.589	35.512	35.675	0					11	8	2	0	0	0	0.73697	1	12028	12028		15.642	1.5047	1	71680			11353	11668	7259	7292	11536	11536					-0.023440426708020823
FPFLPPSL	8	Unmodified	_FPFLPPSL_					0	0	0		ENST00000465299.1_3_6:145157593-145158348:+|nuORF	ENST00000465299.1_3_6:145157593-145158348:+|nuORF	ENST00000465299.1_3_6:145157593-145158348:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.25909423828125	2	459.260197	916.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.424	1	42.424	41.924	42.924	0								0	0	0	1.7419	1	16931	16931		62.978	10.679	1				11354	9777	7260	7293	11537	11537					0.04424775879522258
FPFSAQSGAGV	11	Unmodified	_FPFSAQSGAGV_					0	0	0		nc|ENSG00000185499|P15941-10|MUC1;ENST00000468978.2_1_1:155159604-155160306:-|nuORF;nc|ENSG00000185499|P15941-15|MUC1;nc|ENSG00000185499|P15941-6|MUC1;nc|ENSG00000185499|P15941-7|MUC1;nc|ENSG00000185499|P15941-17|MUC1;nc|ENSG00000185499|P15941-11|MUC1;nc|ENSG00000185499|P15941-8|MUC1;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1	nc|ENSG00000185499|P15941-10|MUC1;ENSG00000185499|ENST00000620103|MUC1	ENSG00000185499|ENST00000620103|MUC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7609252929688	2	534.261456	1066.50836	0.29028	0.00015509	2.3237	0.0012414	2.6139	0.0013965	534.2634596087089	32.869	0.83375	32.869	32.343	33.176	0					28	20	2	0	0	0	0.66391	1	12622	12622		21.686	0	1	252290			11355	11684;7083	7261	7294	11538	11538					-0.02223420453469771
FPFVNLKVG	9	Unmodified	_FPFVNLKVG_					0	0	0		ENST00000502489.5_1_5:31983264-32077762:+|nuORF	ENST00000502489.5_1_5:31983264-32077762:+|nuORF	ENST00000502489.5_1_5:31983264-32077762:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7959899902344	2	510.797478	1019.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.389	1	48.389	47.889	48.889	0								0	0	0	0.37146	1	19235	19235		19.36	0	1				11356	10156	7262	7295	11539	11539					0.07139538690898917
FPGFLGSFFS	10	Unmodified	_FPGFLGSFFS_					0	0	0			REV__ENST00000597160.1_1_19:48000164-48018221:-|nuORF	REV__ENST00000597160.1_1_19:48000164-48018221:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2709350585938	2	553.271293	1104.52803	3.6405	0.0020142	-2.7216	-0.0015058	0.91891	0.0005084	553.2697728712693	41.943	0.22328	41.943	41.872	42.095	0					11	6	3	0	0	0	0.46215	1	16737	16737		49.442	2.6751	1	101840	+		11357	20571	7263	7296	11540	11540					-0.020050444427170078
FPGPDGGAVRL	11	Unmodified	_FPGPDGGAVRL_					0	0	0			REV__ENST00000574767.5_1_17:78518930-78519083:+|nuORF	REV__ENST00000574767.5_1_17:78518930-78519083:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.2929077148438	2	543.290548	1084.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.926	1	34.926	34.426	35.426	0								0	0	0	0.24985	1	13053	13053		58.23	1.5089	1		+		11358	20408	7264	7297	11541	11541					0.027642611918281546
FPGPSAPPAL	10	Unmodified	_FPGPSAPPAL_					0	0	0			REV__nc|ENSG00000153094|O43521-11|BCL2L11	REV__nc|ENSG00000153094|O43521-11|BCL2L11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.25885009765625	2	477.258185	952.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.206	1	30.206	29.706	30.706	0								0	0	0	0.4201	1	9600	9600		24.203	1.1603	1		+		11359	12280	7265	7298	11542	11542					0.02366686385801131
FPGTAGPGL	9	Unmodified	_FPGTAGPGL_					0	0	0		nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.716064453125	2	408.716153	815.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.696	1	29.696	29.196	30.196	0								0	0	0	0.28164	1	10633	10633		38.806	6.8513	1				11360	11680	7266	7299	11543	11543					0.0026615528890943096
FPGWIVYI	8	Unmodified	_FPGWIVYI_					0	0	0			REV__nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3	REV__nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7731628417969	2	497.773471	993.53239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.143	1	13.143	12.643	13.643	0								0	0	0	1.7419	1	2925	2925		16.705	0	1		+		11361	16962	7267	7300	11544	11544					0.035364647708547636
FPHLVGVLA	9	Unmodified	_FPHLVGVLA_					0	0	0			REV__nc|nan|Q32M92-2|C15orf32	REV__nc|nan|Q32M92-2|C15orf32	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7853698730469	2	476.78437	951.554188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.54	1	11.54	11.04	12.04	0								0	0	0	0.3269	1	2245	2245		29.842	0	1		+		11362	21272	7268	7301	11545	11545					0.07647269519418387
FPHSAHQKY	9	Unmodified	_FPHSAHQKY_					0	0	0		ENSG00000188846|ENST00000396203|RPL14;ENST00000481798.1_1_3:40499446-40503006:+|nuORF	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.1857604980469	3	372.185802	1113.53558	0.78221	0.00029113	-1.2267	-0.00045656	-0.44449	-0.00016543	372.1854220715955	18.134	0.31588	18.134	18.037	18.353	0					12	7	2	0	0	0	0.42902	1	5263	5263		39.253	11.171	1	773710			11363	7279	7269	7302	11546	11546					-0.01664892122425954
FPHSALER	8	Unmodified	_FPHSALER_					0	0	0			REV__ENST00000548710.5_3_12:49760692-49854587:+|nuORF	REV__ENST00000548710.5_3_12:49760692-49854587:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7507629394531	2	478.751059	955.487565	-0.1161	-5.5584E-05	-0.23622	-0.00011309	-0.35232	-0.00016867	478.7509263236339	25.367	0.26301	25.367	25.256	25.519	0					8	5	2	0	0	0	0.63077	1	9005	9005		44.117	5.3107	1	336790	+		11364	20183	7270	7303	11547	11547					0.008040339575131839
FPIFFLYMM	9	Unmodified	_FPIFFLYMM_					0	0	0		PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB;PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant;PHKB|p.N422Ifs*52|1|0.46|ENSG00000102893|chr16:47596427-47596427|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.798828125	2	604.797774	1207.581	3.0152	0.0018236	-1.2811	-0.0007748	1.7341	0.0010488	604.7970786206123	31.199	0.26019	31.199	31.093	31.353	0					15	5	4	0	0	0	0.31222	1	11650	11650		49.211	3.2385	1	728120			11365	2197	7271	7304	11548	11548					-0.014491259759324748
FPIFVALLY	9	Unmodified	_FPIFVALLY_					0	0	0		ENST00000413432.2_1_2:242383334-242383583:+|nuORF	ENST00000413432.2_1_2:242383334-242383583:+|nuORF	ENST00000413432.2_1_2:242383334-242383583:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.817626953125	2	541.817879	1081.6212	0.64006	0.0003468	-1.6081	-0.00087128	-0.96801	-0.00052448	541.8169715748037	34.742	0.30869	34.742	34.538	34.847	0					10	6	2	0	0	0	0.52436	1	13361	13361		29.842	8.1392	1	96422			11366	9334	7272	7305	11549	11549					0.08365880010524052
FPILDHFA	8	Unmodified	_FPILDHFA_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2;LMTK2|p.F540Lfs*16|1|0.31|ENSG00000164715|chr7:98192081-98192081|T/-|frameshift_variant	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.25067138671875	2	480.252903	958.491253	-2.9252	-0.0014048	-1.7433	-0.00083722	-4.6684	-0.002242	480.25196633512155	29.292	0.29848	29.292	29.159	29.458	0					10	7	2	0	0	0	0.66238	1	9863	9863		39.021	0.21535	1	183530			11367	5721	7273	7306	11550	11550					0.010347037313749752
FPINIWIF	8	Unmodified	_FPINIWIF_					0	0	0		ENSG00000184650|ENST00000328248|ODF4	ENSG00000184650|ENST00000328248|ODF4	ENSG00000184650|ENST00000328248|ODF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.296142578125	2	525.294571	1048.57459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.729	1	28.729	28.229	29.229	0								0	0	0	1.7419	1	10186	10186		37.028	1.8278	1				11368	7029	7274	7307	11551	11551					0.05224440179222256
FPIPQYAL	8	Unmodified	_FPIPQYAL_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.76129150390625	2	474.763104	947.511654	0.61294	0.000291	-4.0161	-0.0019067	-3.4032	-0.0016157	474.76126781192704	41.713	0.1336	41.713	41.656	41.789	0					8	5	2	0	0	0	0.57802	1	16410	16410		52.299	7.7681	1	74439	+		11369	15034	7275	7308	11552	11552					0.035798743911641395
FPIPSLYDL	9	Unmodified	_FPIPSLYDL_					0	0	0			REV__ENSG00000229474|ENST00000682850|PATL2	REV__ENSG00000229474|ENST00000682850|PATL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7876586914062	2	532.786776	1063.559	3.403	0.0018131	-1.5689	-0.00083588	1.8341	0.00097721	532.7856914989944	11.571	0.10957	11.571	11.533	11.642	0					5	3	2	0	0	0	0.61124	1	2277	2277		7.6903	0.49693	1	354120	+		11370	17639	7276	7309	11553	11553					0.029761088715076767
FPITQALLQ	9	Unmodified	_FPITQALLQ_					0	0	0			REV__NFE2L2|p.F127I|1|0.35|ENSG00000116044|chr2:177233273-177233273|A/T|missense_variant	REV__NFE2L2|p.F127I|1|0.35|ENSG00000116044|chr2:177233273-177233273|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8004760742188	2	515.800217	1029.58588	1.5117	0.00077973	-1.1623	-0.0005995	0.34941	0.00018023	515.7996088241878	44.468	0.72801	44.468	44.168	44.896	0					36	30	2	0	0	0	0.30841	1	17880	17880		49.536	0	1	72158	+		11371	21287	7277	7310	11554	11554					0.07227217482704873
FPKGEQEL	8	Unmodified	_FPKGEQEL_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2453308105469	2	474.245275	946.475997	-0.59402	-0.00028171	0.26553	0.00012593	-0.32849	-0.00015578	474.24543877906933	41.697	0.66799	41.697	41.53	42.198	0					29	18	2	0	0	0	0.58597	1	16575	16575		51.335	5.3835	1	145520			11372	2807	7278	7311	11555	11555					0.0006179214351504925
FPKLLACL	8	Unmodified	_FPKLLACL_					0	0	0		ENSG00000175449|ENST00000380005|RFESD	ENSG00000175449|ENST00000380005|RFESD	ENSG00000175449|ENST00000380005|RFESD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7688293457031	2	452.769874	903.525196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.422	1	15.422	14.922	15.922	0								0	0	0	1.7419	1	3354	3354		37.028	2.8559	1				11373	6557	7279	7312	11556	11556					0.0695740889876788
FPKQSSNQNN	10	Unmodified	_FPKQSSNQNN_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.778076171875	2	582.275626	1162.5367	-0.32027	-0.00018649	4.0353	0.0023497	3.7151	0.0021632	582.2781195061641	37.716	0.16601	37.716	37.61	37.776	0					10	5	3	0	0	0	0.58189	1	14759	14759		36.447	3.6343	1	56995	+		11374	15218	7280	7313	11557	11557					-0.038067225441636765
FPKSFLQQL	9	Unmodified	_FPKSFLQQL_					0	0	0			REV__ENSG00000198108|ENST00000305031|CHSY3	REV__ENSG00000198108|ENST00000305031|CHSY3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.313720703125	2	554.313492	1106.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.853	1	32.853	32.353	33.353	0								0	0	0	0.25045	1	12522	12522		44.377	5.1244	1		+		11375	17380	7281	7314	11558	11558					0.06338906374048747
FPKTGKSKIG	10	Unmodified	_FPKTGKSKIG_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant;CCDC168|p.F3005Lfs*18|2|0.31|ENSG00000175820|chr13:102741682-102741682|A/-|frameshift_variant;CCDC168|p.T2792Dfs*27|1|0.25|ENSG00000175820|chr13:102742324-102742325|-/T|frameshift_variant;CCDC168|p.N2119Kfs*18|1|0.41|ENSG00000175820|chr13:102744340-102744341|-/T|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.88153076171875	3	354.88172	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.787	1	18.787	18.287	19.287	0								0	0	0	0.37129	1	5690	5690		36.318	7.1476	1				11376	6578	7282	7315	11559	11559					0.09498308748334239
FPLKRKMS	8	Unmodified	_FPLKRKMS_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.8002624511719	2	503.796955	1005.57936	2.9304	0.0014763	1.7555	0.0008844	4.6858	0.0023607	503.7988034312591	27.229	0.77066	27.229	26.671	27.441	0					27	15	3	0	0	0	0.59411	1	9737	9737		50.025	7.5501	1	634100	+		11377	13612	7283	7316	11560	11560					0.07679001050348688
FPLLNYPRSD	10	Unmodified	_FPLLNYPRSD_					0	0	0			REV__LTB4R2|p.G378Vfs*47|1|0.14|ENSG00000213906|chr14:24311699-24311699|G/-|frameshift_variant	REV__LTB4R2|p.G378Vfs*47|1|0.14|ENSG00000213906|chr14:24311699-24311699|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	611.3140869140625	2	611.316763	1220.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.351	1	38.351	37.851	38.851	0								0	0	0	0.4201	1	12515	12515		14.137	1.3254	1		+		11378	20851	7284	7317	11561	11561					0.01748799534743739
FPLNSIPTPL	10	Unmodified	_FPLNSIPTPL_					0	0	0		ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.21295166015625	3	366.877975	1097.6121	0.083012	3.0455E-05	0.45863	0.00016826	0.54164	0.00019872	366.8778118733222	28.199	0.36329	28.199	28.082	28.445	0					23	11	3	0	0	0	0.536	1	8831	8831		41.427	6.2746	1	154420			11379	5787	7285	7318	11562	11562					0.06719486654174034
FPLNVLCL	8	Unmodified	_FPLNVLCL_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.76116943359375	2	459.759507	917.50446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.342	1	50.342	49.842	50.842	0								0	0	0	1.7419	1	19864	19864		28.254	1.4582	1				11380	1518	7286	7319	11563	11563					0.04240818519087952
FPLPSMYR	8	Unmodified	_FPLPSMYR_					0	0	0		ENST00000607532.5_1_6:13307806-13327130:-|nuORF;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;ENSG00000145979|ENST00000379300|TBC1D7	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7611083984375	2	505.760038	1009.50552	-0.29059	-0.00014697	2.7684	0.0014002	2.4778	0.0012532	505.7617334967669	34.99	0.16754	34.99	34.88	35.048	0					5	3	2	0	0	0	0.65276	1	13478	13478		40.573	1.7665	1	81240			11381	4704	7287	7320	11564	11564					0.0011503288801577582
FPLVMLIW	8	Unmodified	_FPLVMLIW_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1;ENST00000482210.5_1_9:75538907-75567871:-|nuORF	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.79364013671875	2	509.793349	1017.57215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.796	1	21.796	21.296	22.296	0								0	0	0	1.7419	1	6058	6058		16.705	3.2509	1				11382	5756	7288	7321	11565	11565					0.06406268449904928
FPLYMQMVQ	9	Unmodified	_FPLYMQMVQ_					0	0	0			REV__ENST00000497003.5_1_2:178552959-178791632:-|nuORF	REV__ENST00000497003.5_1_2:178552959-178791632:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.2822265625	2	578.780113	1155.54567	-1.6667	-0.00096465	2.0494	0.0011862	0.38273	0.00022152	578.7808969230781	22.52	0.93374	22.52	22.407	23.341	0					51	21	3	0	0	0	0.41354	1	6852	6852		40.573	2.7611	1	183570	+		11383	19781	7289	7322	11566	11566					-0.025877885037061787
FPMEIRQY	8	Unmodified	_FPMEIRQY_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.27001953125	2	542.268227	1082.5219	1.8879	0.0010238	-0.55705	-0.00030207	1.3309	0.00072168	542.2682949569387	39.589	0.32938	39.589	39.401	39.731	0					18	13	2	0	0	0	0.76187	1	15056	15056		25.574	0	1	55247			11384	2905	7290	7323	11567	11567					-0.016058859458780717
FPMEIRQY	8	Unmodified	_FPMEIRQY_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2685546875	2	542.268227	1082.5219	0.63032	0.0003418	0.63134	0.00034235	1.2617	0.00068415	542.2686453371102	39.503	0.68666	39.503	39.301	39.987	0					29	15	2	0	0	0	0.29286	2	15747	15579;15747		84.916	38.943	1	155920			11385	2905	7290	7323	11568;11569	11569					-0.016058859458780717
FPMEIRQY	8	Unmodified	_FPMEIRQY_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2686157226562	2	542.268227	1082.5219	2.0369	0.0011045	-1.7743	-0.00096217	0.26252	0.00014236	542.2672728742996	39.487	0.89637	39.487	39.332	40.229	0					40	20	3	0	0	0	0.66095	1	15619	15619		39.253	0	1	165820			11386	2905	7290	7323	11570	11570					-0.016058859458780717
FPMLFILS	8	Oxidation (M)	_FPM(Oxidation (M))LFILS_		FPM(1)LFILS		FPM(55)LFILS	0	0	1			REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2685241699219	2	492.267164	982.519776	-0.58575	-0.00028834	-3.8392	-0.0018899	-4.425	-0.0021783	492.2652800224404	32.329	0.67247	32.329	32.219	32.892	0					21	13	2	0	0	0	0.55361	1	12290	12290		54.765	6.8491	1	386270	+		11387	20177	7291	7324	11571	11571		732			0.027816853163017186
FPMMFSQM	8	Oxidation (M)	_FPMMFSQM(Oxidation (M))_		FPMMFSQM(1)		FPM(-47)M(-43)FSQM(43)	0	0	1			REV__ENST00000589834.1_1_17:73845679-73851408:-|nuORF	REV__ENST00000589834.1_1_17:73845679-73851408:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7132568359375	2	517.710842	1033.40713	0.39786	0.00020597	3.6375	0.0018832	4.0354	0.0020892	517.7124914111442	27.295	0.17119	27.295	27.201	27.372	0					11	7	2	0	0	0	0.54629	1	8383	8383		55.504	19.886	3	57048	+		11388	14660	7292	7325	11572	11572		556			-0.10823654743694533
FPMRYLPL	8	Unmodified	_FPMRYLPL_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7881469726562	2	518.786056	1035.55756	1.589	0.00082435	1.3916	0.00072192	2.9806	0.0015463	518.7868476645073	39.632	0.18724	39.632	39.513	39.701	0					6	4	2	0	0	0	0.66372	1	15674	15674		20.482	0	1	185870			11389	4355	7293	7326	11573	11573					0.04120196301778378
FPMTHGNTGF	10	Unmodified	_FPMTHGNTGF_					0	0	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7477416992188	2	554.747659	1107.48076	1.8213	0.0010104	-0.50406	-0.00027963	1.3172	0.00073073	554.7475078970763	35.116	2.4527	35.116	34.376	36.829	0					129	49	4	0	0	0	0.4758	1	13903	13903		47.96	0.043923	1	595830			11390	7427	7294	7327	11574	11574					-0.06867646985347164
FPMTHGNTGF	10	Unmodified	_FPMTHGNTGF_					0	0	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7481689453125	2	554.747659	1107.48076	3.569	0.0019799	4.0372	0.0022396	7.6062	0.0042195	555.2512080333178	35.117	2.1527	35.117	34.36	36.513	0					129	43	6	0	0	0	0.22691	1	13753	13753		76.17	1.9146	1	1237300			11391	7427	7294	7327	11575	11575					-0.06867646985347164
FPMVYCILL	9	Unmodified	_FPMVYCILL_					0	0	0		nc|ENSG00000177669|Q96T53-2|MBOAT4;ENSG00000177669|ENST00000320542|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7901000976562	2	549.789949	1097.56535	1.8376	0.0010103	-3.2727	-0.0017993	-1.4351	-0.000789	550.2895414907396	38.574	0.14119	38.574	38.53	38.671	0					9	6	2	0	0	0	0.31222	1	14668	14668		49.211	5.5847	1	44751			11392	6681	7295	7328	11576	11576					0.020465875070385664
FPNAIEHTL	9	Unmodified	_FPNAIEHTL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2721557617188	2	521.271824	1040.5291	1.5216	0.00079316	-0.63505	-0.00033103	0.88653	0.00046212	521.2712967945579	38.598	0.80553	38.598	38.072	38.878	0					68	31	3	0	0	0	0.17854	1	14664	14664		64.207	14.766	1	218630			11393	3687	7296	7329	11577	11577					0.010451699261921021
FPNGFSRKR	9	Unmodified	_FPNGFSRKR_					0	0	0			REV__ENSG00000004660|ENST00000348335|CAMKK1;REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	REV__ENSG00000004660|ENST00000348335|CAMKK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.3074340820312	2	554.804157	1107.59376	-1.0925	-0.00060615	-0.21243	-0.00011785	-1.305	-0.000724	554.8040162018838	33.989	0.80737	33.989	33.878	34.686	0					78	24	5	0	0	0	0.47473	1	12290	12290		35.152	0.97948	1	14839000	+		11394	12825;12323	7297	7330	11578	11578					0.04426789522835861
FPNPSSSLV	9	Unmodified	_FPNPSSSLV_					0	0	0			REV__ENSG00000278129|ENST00000621650|ZNF8	REV__ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.24481201171875	2	474.245275	946.475997	0.69304	0.00032867	-1.4112	-0.00066927	-0.71818	-0.0003406	474.2446651039021	41.804	0.86102	41.804	41.557	42.418	0					39	23	2	0	0	0	0.16002	1	16743	16743		66.429	5.4573	1	110840	+		11395	17839	7298	7331	11579	11579					0.0006179214352641793
FPNQTGVVMCP	11	Unmodified	_FPNQTGVVMCP_					0	0	0			REV__ENSG00000169026|ENST00000322224|SLC49A3	REV__ENSG00000169026|ENST00000322224|SLC49A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.7785034179688	2	596.778102	1191.54165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.013	1	31.013	30.513	31.513	0								0	0	0	0.34425	1	9933	9933		45.972	8.1607	1		+		11396	16289	7299	7332	11580	11580					-0.04645877997404568
FPNRFSGRQ	9	Unmodified	_FPNRFSGRQ_					0	0	0		nc|ENSG00000211715|A0A0A0MS03|TRBV5-3	nc|ENSG00000211715|A0A0A0MS03|TRBV5-3	nc|ENSG00000211715|A0A0A0MS03|TRBV5-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.787353515625	2	554.785964	1107.55738	3.5834	0.001988	-0.2246	-0.00012461	3.3588	0.0018634	554.7855372897814	35.064	1.3623	35.064	34.651	36.013	0					76	27	4	0	0	0	0.40353	1	13414	13414		41.427	0.85399	1	915570			11397	11738	7300	7333	11581	11581					0.007899126261236233
FPNVYALLK	9	Unmodified	_FPNVYALLK_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENSG00000137492|ENST00000260045|THAP12	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8130493164062	2	532.810585	1063.60662	3.4014	0.0018123	-0.053194	-2.8342E-05	3.3482	0.001784	532.810814430019	43.326	0.49683	43.326	43.203	43.699	0					52	17	4	0	0	0	0.25761	1	17311	17311		56.721	20.274	1	2570700			11398	4170	7301	7334	11582	11582					0.07735807862354704
FPPAVNRVSP	10	Unmodified	_FPPAVNRVSP_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.3003540039062	2	542.300916	1082.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.973	1	32.973	32.473	33.473	0								0	0	0	0.10801	1	10695	10695		66.429	22.312	1				11399	7821	7302	7335	11583	11583					0.049288515714806636
FPPHPPQLF	9	Unmodified	_FPPHPPQLF_					0	0	0			REV__ENST00000326793.10_2_3:194995885-194995939:-|nuORF	REV__ENST00000326793.10_2_3:194995885-194995939:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.290283203125	2	540.287277	1078.56	3.473	0.0018764	1.741	0.00094065	5.214	0.0028171	540.2882135603018	41.099	0.22499	41.099	41.002	41.227	0					9	5	3	0	0	0	0.21116	1	16331	16331		60.294	8.9585	1	256880	+		11400	18358	7303	7336	11584	11584					0.023863680310796553
FPPPSWGGW	9	Unmodified	_FPPPSWGGW_					0	0	0		ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7410888671875	2	515.742702	1029.47085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.201	1	15.201	14.701	15.701	0								0	0	0	0.34228	1	4109	4109		26.796	2.5934	1				11401	8971	7304	7337	11585	11585					-0.042704669284375996
FPPTHPGAGW	10	Unmodified	_FPPTHPGAGW_					0	0	0		ENST00000373314.7_1_9:130268517-130268865:-|nuORF	ENST00000373314.7_1_9:130268517-130268865:-|nuORF	ENST00000373314.7_1_9:130268517-130268865:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7595825195312	2	533.758884	1065.50321	0.1483	7.9155E-05	0.81184	0.00043333	0.96014	0.00051248	533.7593568150307	12.408	0.73009	12.408	12.107	12.837	0					59	23	4	0	0	0	0.69166	1	2529	2529		23.042	2.5607	1	1634700			11402	8992	7305	7338	11586	11586					-0.026916795254237513
FPQQPSVKA	9	Unmodified	_FPQQPSVKA_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2749328613281	2	501.274367	1000.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.328	1	31.328	30.828	31.828	0								0	0	0	0.23445	1	10061	10061		45.972	5.1941	1				11403	7732	7306	7339	11587	11587					0.03393473788810297
FPQSPLQIPQS	11	Unmodified	_FPQSPLQIPQS_					0	0	0		MAGEC1|p.E734Rfs*11|1|0.55|ENSG00000155495|chrX:141907600-141907600|G/-|frameshift_variant;MAGEC1|p.V912Gfs*44|1|0.44|ENSG00000155495|chrX:141908132-141908133|-/A|frameshift_variant;ENSG00000155495|ENST00000285879|MAGEC1	MAGEC1|p.E734Rfs*11|1|0.55|ENSG00000155495|chrX:141907600-141907600|G/-|frameshift_variant	MAGEC1|p.E734Rfs*11|1|0.55|ENSG00000155495|chrX:141907600-141907600|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.5559387207031	3	414.555672	1240.64519	-2.3238	-0.00096333	3.1825	0.0013193	0.8587	0.00035598	414.55697919292885	25.29	0.18728	25.29	25.198	25.386	0					7	4	2	0	0	0	0.64323	1	8028	8028		33.039	2.9003	1	121820			11404	5127	7307	7340	11588	11588					0.03449068706254366
FPRAFMSM	8	Unmodified	_FPRAFMSM_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF;NALCN|p.K626Nfs*19|1|0.45|ENSG00000102452|chr13:101144858-101144858|C/-|frameshift_variant;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;NALCN|p.K812Rfs*6|1|0.11|ENSG00000102452|chr13:101107719-101107719|T/-|frameshift_variant;NALCN|p.V852Wfs*19|1|0.07|ENSG00000102452|chr13:101107512-101107512|C/-|frameshift_variant;NALCN|p.F1212Lfs*26|2|0.08|ENSG00000102452|chr13:101083146-101083146|A/-|frameshift_variant	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.734375	2	493.732966	985.451379	2.7825	0.0013738	-0.68702	-0.0003392	2.0955	0.0010346	493.7327160267569	31.843	0.4695	31.843	31.684	32.153	0					30	9	4	0	0	0	0.52345	1	11935	11935		57.811	57.811	1	2149200			11405	2173	7308	7341	11589	11589					-0.04192882535198805
FPRENKPCI	9	Unmodified	_FPRENKPCI_					0	0	0		TM2D2|p.L136P|1|0.15|ENSG00000169490|chr8:38993569-38993569|A/G|missense_variant	TM2D2|p.L136P|1|0.15|ENSG00000169490|chr8:38993569-38993569|A/G|missense_variant	TM2D2|p.L136P|1|0.15|ENSG00000169490|chr8:38993569-38993569|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.288330078125	2	552.286951	1102.55935	0.46411	0.00025632	2.3825	0.0013158	2.8466	0.0015721	552.2880544387073	22.228	0.21428	22.228	22.119	22.334	0					8	4	3	0	0	0	0.10915	1	7505	7505		77.318	15.626	1	223130			11406	22538	7309	7342	11590	11590					0.012172053197218702
FPRGRRPL	8	Unmodified	_FPRGRRPL_					0	0	0			REV__ENST00000293826.4_1_17:7464569-7464860:+|nuORF	REV__ENST00000293826.4_1_17:7464569-7464860:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.80328369140625	2	499.80396	997.593367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.536	1	41.536	41.036	42.036	0								0	0	0	1.7419	1	16332	16332		26.796	0	1		+		11407	18166	7310	7343	11591	11591					0.09447414593637404
FPRHESRG	8	Unmodified	_FPRHESRG_					0	0	0			REV__ENST00000450728.1_1_2:200334820-200335477:+|nuORF	REV__ENST00000450728.1_1_2:200334820-200335477:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.20135498046875	3	329.170264	984.488962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.484	1	27.484	26.984	27.984	0								0	0	0	1.7419	1	8475	8475		15.642	0	1		+		11408	19309	7311	7344	11592	11592					-0.003903319537130301
FPRQIVSN	8	Unmodified	_FPRQIVSN_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.76519775390625	2	480.766709	959.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.98	1	15.98	15.48	16.48	0								0	0	0	1.7419	1	4332	4332		47.916	7.343	1				11409	4929	7312	7345	11593	11593					0.03748606991609904
FPRRGRPSP	9	Unmodified	_FPRRGRPSP_					0	0	0			REV__ENST00000418273.2_1_10:88729621-88729924:-|nuORF	REV__ENST00000418273.2_1_10:88729621-88729924:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.3040161132812	2	535.304324	1068.5941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.734	1	36.734	36.234	37.234	0								0	0	0	0.3245	1	12040	12040		30.318	3.5216	1		+		11410	19050	7313	7346	11594	11594					0.06254209242706565
FPRSSLAEI	9	Unmodified	_FPRSSLAEI_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2781677246094	2	510.279649	1018.54475	1.3676	0.00069787	-0.7291	-0.00037204	0.63852	0.00032583	510.2791461239135	42.206	0.56956	42.206	41.848	42.418	0					24	15	2	0	0	0	0.28897	1	16830	16830		53.351	23.51	1	68904	+		11411	15809	7314	7347	11595	11595					0.03621456443238458
FPSAKDPTW	9	Unmodified	_FPSAKDPTW_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7591552734375	2	524.758549	1047.50255	0.53808	0.00028236	0.048046	2.5212E-05	0.58613	0.00030758	524.7585297255902	37.007	0.84898	37.007	36.778	37.627	0					29	17	2	0	0	0	0.21263	2	14598	14389;14598		60.118	2.307	1	82995			11412	1201	7315	7348	11596;11597	11597					-0.019305189651504406
FPSFTQRM	8	Unmodified	_FPSFTQRM_					0	0	0			REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2442932128906	2	507.247295	1012.48004	-0.64702	-0.0003282	-3.9114	-0.001984	-4.5584	-0.0023122	507.24488502134346	18.206	0.11542	18.206	18.15	18.265	0					5	4	2	0	0	0	0.67394	1	4725	4725		37.159	11.585	1	34150	+		11413	14130	7316	7349	11598	11598					-0.025704416343955927
FPSGLRAAR	9	Unmodified	_FPSGLRAAR_					0	0	0			REV__nc|ENSG00000172425|A6NLP5-2|TTC36	REV__nc|ENSG00000172425|A6NLP5-2|TTC36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7804870605469	2	487.780151	973.545748	-0.22158	-0.00010808	-0.91893	-0.00044824	-1.1405	-0.00055632	487.77987611848675	35.465	0.099392	35.465	35.378	35.478	0					5	3	2	0	0	0	0.33044	1	12635	12635		47.657	1.7054	1	43922	+		11414	16464	7317	7350	11599	11599					0.05791715602799741
FPSIRARTK	9	Unmodified	_FPSIRARTK_					0	0	0			REV__ENSG00000198570|ENST00000680073|RD3	REV__ENSG00000198570|ENST00000680073|RD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2183837890625	3	359.217214	1074.62981	3.0932	0.0011111	-0.39434	-0.00014166	2.6988	0.00096946	359.2172671856184	13.016	0.24579	13.016	12.947	13.193	0					10	5	3	0	0	0	0.48389	1	2919	2919		41.427	5.109	1	670980	+		11415	17407	7318	7351	11600	11600					0.0954824669968275
FPSIYDVKY	9	Unmodified	_FPSIYDVKY_					0	0	0		nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.291015625	2	566.289682	1130.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.729	1	46.729	46.229	47.229	0								0	0	0	0.20989	1	18692	18692		42.396	25.923	1				11416	5129	7319	7352	11601	11601					0.004752073831923553
FPSLPGTPGF	10	Unmodified	_FPSLPGTPGF_					0	0	0		ENST00000607166.1_1_10:31607359-31607734:-|nuORF	ENST00000607166.1_1_10:31607359-31607734:-|nuORF	ENST00000607166.1_1_10:31607359-31607734:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2610778808594	2	510.263468	1018.51238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.877	1	41.877	41.377	42.377	0								0	0	0	0.22634	1	16682	16682		60.972	5.4677	1				11417	11092	7320	7353	11602	11602					0.00386669040256038
FPSPALQQQ	9	Unmodified	_FPSPALQQQ_					0	0	0		ENST00000592414.1_1_19:3053819-3054095:-|nuORF	ENST00000592414.1_1_19:3053819-3054095:-|nuORF	ENST00000592414.1_1_19:3053819-3054095:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.26348876953125	2	508.263999	1014.51345	-0.026054	-1.3242E-05	-0.32815	-0.00016679	-0.35421	-0.00018003	508.2638799721855	41.162	0.20198	41.162	41.07	41.272	0					15	9	2	0	0	0	0.48623	1	15647	15647		34.173	0	1	148610			11418	10970	7321	7354	11603	11603					0.006768834091303688
FPSSNVHVY	9	Unmodified	_FPSSNVHVY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2578125	2	525.256174	1048.49779	1.9195	0.0010082	-0.047876	-2.5147E-05	1.8716	0.00098307	525.2557545896253	33.478	0.74955	33.478	33.26	34.009	0					39	19	4	0	0	0	0.30268	1	12390	12390		50.025	17.212	1	159040			11419	4846	7322	7355	11604	11604					-0.024514031078979315
FPSSVTNTL	9	Unmodified	_FPSSVTNTL_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2506408691406	2	483.250557	964.486562	-1.2822	-0.00061963	0.67033	0.00032394	-0.61189	-0.0002957	483.2509163207498	41.584	0.41017	41.584	41.421	41.832	0					31	24	2	0	0	0	0.49718	1	13774	13774		32.751	2.909	1	47274			11420	4655	7323	7356	11605	11605					0.0028977479797731576
FPSSVTNTL	9	Unmodified	_FPSSVTNTL_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2503356933594	2	483.250557	964.486562	-0.09908	-4.788E-05	0.55385	0.00026765	0.45477	0.00021977	483.25079688139266	41.777	0.54507	41.777	41.636	42.181	0					47	24	3	0	0	0	0.22837	1	16399	16399		58.23	1.5089	1	322700			11421	4655	7323	7356	11606	11606					0.0028977479797731576
FPSSVTNTL	9	Unmodified	_FPSSVTNTL_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2503662109375	2	483.250557	964.486562	-0.59908	-0.0002895	0.35268	0.00017043	-0.2464	-0.00011907	483.25071643371007	41.701	1.0055	41.701	41.53	42.535	0					53	27	3	0	0	0	0.15163	2	16574	16574;16727		67.494	6.7668	1	690100			11422	4655	7323	7356	11607;11608	11607					0.0028977479797731576
FPSSVTNTL	9	Unmodified	_FPSSVTNTL_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.25018310546875	2	483.250557	964.486562	0.88044	0.00042547	-1.8719	-0.00090459	-0.99144	-0.00047911	483.2498675432071	41.64	1.2792	41.64	41.313	42.592	0					78	34	3	0	0	0	0.13267	2	16720	16566;16720		71.877	15.156	1	554490			11423	4655	7323	7356	11609;11610	11610					0.0028977479797731576
FPSVSPSAGKL	11	Unmodified	_FPSVSPSAGKL_					0	0	0		ENST00000561344.5_1_15:96831982-96833988:-|nuORF;ENST00000558935.1_1_15:96833853-96870226:-|nuORF;ENST00000560010.1_1_15:96833853-96870526:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF	ENST00000561344.5_1_15:96831982-96833988:-|nuORF	ENST00000561344.5_1_15:96831982-96833988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3008422851562	2	545.300581	1088.58661	0.51974	0.00028342	0.03564	1.9434E-05	0.55538	0.00030285	545.3005338221753	33.33	0.32254	33.33	33.144	33.466	0					25	13	3	0	0	0	0.60656	1	11166	11166		36.447	0	1	160340			11424	10151	7324	7357	11611	11611					0.045860121317673475
FPTGVGVMVQ	10	Unmodified	_FPTGVGVMVQ_					0	0	0			REV__ENSG00000131183|ENST00000324417|SLC34A1	REV__ENSG00000131183|ENST00000324417|SLC34A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7714233398438	2	517.770603	1033.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.321	1	27.321	26.821	27.821	0								0	0	0	0.32041	1	8694	8694		47.657	3.5405	1		+		11425	14613	7325	7358	11612	11612					0.011229981968881475
FPTSSNTTSD	10	Unmodified	_FPTSSNTTSD_					0	0	0		NDST4|p.P655S|1|0.49|ENSG00000138653|chr4:114845975-114845975|G/A|missense_variant	NDST4|p.P655S|1|0.49|ENSG00000138653|chr4:114845975-114845975|G/A|missense_variant	NDST4|p.P655S|1|0.49|ENSG00000138653|chr4:114845975-114845975|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.727294921875	2	528.727643	1055.44073	0.10931	5.7796E-05	-0.090556	-4.7879E-05	0.018755	9.9165E-06	528.7276081333677	10.453	0.062901	10.453	10.429	10.492	0					5	3	2	0	0	0	0.74461	1	1987	1987		14.137	0	1	68338			11426	11848	7326	7359	11613	11613					-0.08476915174946953
FPTTTTKKP	9	Unmodified	_FPTTTTKKP_					0	0	0		sp|Q6SWB9|UL11P_HCMVMProteinUL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL11PE=1SV=1	sp|Q6SWB9|UL11P_HCMVMProteinUL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL11PE=1SV=1	sp|Q6SWB9|UL11P_HCMVMProteinUL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL11PE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.7914733886719	2	510.78985	1019.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.914	1	12.914	12.414	13.414	0								0	0	0	0.241	1	2598	2598		45.972	0	1				11427	22480	7327	7360	11614	11614					0.056146271030456774
FPTVSSSIDK	10	Unmodified	_FPTVSSSIDK_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2811279296875	2	540.782222	1079.54989	1.9921	0.0010773	-2.7143	-0.0014678	-0.72218	-0.00039054	540.7802128832536	42.295	0.24297	42.295	42.188	42.431	0					16	11	2	0	0	0	0.52275	1	16591	16591		42.864	0.46813	1	64751			11428	7438	7328	7361	11615	11615					0.013297155151803963
FPTYFKFIT	9	Unmodified	_FPTYFKFIT_					0	0	0		tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1	tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1	tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.3115844726562	2	582.310418	1162.60628	1.4185	0.000826	1.052	0.00061257	2.4705	0.0014386	582.3109516233287	37.924	0.27126	37.924	37.81	38.081	0					16	9	2	0	0	0	0.24095	1	14870	14870		56.721	10.749	1	151110			11429	22603	7329	7362	11616	11616					0.03148388142517433
FPVGNAFSY	9	Unmodified	_FPVGNAFSY_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000474955.5_1_19:19767512-19770537:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2373046875	2	501.239993	1000.46543	-2.1113	-0.0010583	-3.4412	-0.0017249	-5.5525	-0.0027831	501.2378780288201	26.813	0.17237	26.813	26.764	26.936	0					6	4	2	0	0	0	0.39215	1	8699	8699		42.396	1.8235	1	66617			11430	2392	7330	7363	11617	11617					-0.034781905109070976
FPVNTYLPR	9	Unmodified	_FPVNTYLPR_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.8050537109375	2	553.803291	1105.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.553	1	31.553	31.053	32.053	0								0	0	0	0.35737	1	10149	10149		23.042	0	1		+		11431	15713	7331	7364	11618	11618					0.04345735714196053
FPVSCRIVF	9	Unmodified	_FPVSCRIVF_					0	0	0		ENST00000354371.6_1_2:238006612-238006942:+|nuORF	ENST00000354371.6_1_2:238006612-238006942:+|nuORF	ENST00000354371.6_1_2:238006612-238006942:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2922973632812	2	534.288963	1066.56337	3.3809	0.0018064	1.4726	0.00078678	4.8534	0.0025931	534.289888025869	39.806	0.81687	39.806	39.317	40.134	0					47	18	3	0	0	0	0.35045	1	15652	15652		45.952	1.4209	1	589060			11432	8784	7332	7365	11619	11619					0.03275294813442997
FPYGDASKF	9	Unmodified	_FPYGDASKF_					0	0	0		HPCAL4|p.N75Efs*32|1|0.41|ENSG00000116983|chr1:39684093-39684094|-/T|frameshift_variant;ENSG00000163032|ENST00000295156|VSNL1;ENSG00000116983|ENST00000372844|HPCAL4;ENSG00000121905|ENST00000373467|HPCA;ENSG00000115756|ENST00000307845|HPCAL1;ENSG00000104490|ENST00000220931|NCALD	HPCAL4|p.N75Efs*32|1|0.41|ENSG00000116983|chr1:39684093-39684094|-/T|frameshift_variant	HPCAL4|p.N75Efs*32|1|0.41|ENSG00000116983|chr1:39684093-39684094|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.246337890625	2	516.245275	1030.476	0.18894	9.7538E-05	0.09247	4.7737E-05	0.28141	0.00014528	516.245244280399	38.236	1.1488	38.236	37.708	38.856	0					48	24	3	0	0	0	0.098791	2	14829	14829;15026		79.713	17.605	1	118330			11433	2291	7333	7366	11620;11621	11620					-0.03802207856483619
FPYLLGTVL	9	Unmodified	_FPYLLGTVL_					0	0	0		ENST00000267812.3_1_15:44096947-44097118:-|nuORF	ENST00000267812.3_1_15:44096947-44097118:-|nuORF	ENST00000267812.3_1_15:44096947-44097118:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.79852294921875	2	511.799686	1021.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.749	1	44.749	44.249	45.249	0								0	0	0	0.34907	1	16739	16739		25.45	3.7478	1				11434	8362	7334	7367	11622	11622					0.07489003113801118
FPYTSKNEKIK	11	Unmodified	_FPYTSKNEKIK_					0	0	0		tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1	tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1	tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2513427734375	3	452.25036	1353.72925	-0.4111	-0.00018592	2.2497	0.0010174	1.8386	0.00083153	452.251467777037	21.051	0.26277	21.051	20.992	21.254	0					11	5	3	0	0	0	0.45905	1	6802	6802		47.228	5.8011	1	586660			11435	22665	7335	7368	11623	11623					0.06653599803144061
FPYVKRRI	8	Unmodified	_FPYVKRRI_					0	0	0		ENST00000553480.1_1_14:45329665-45330565:-|nuORF	ENST00000553480.1_1_14:45329665-45330565:-|nuORF	ENST00000553480.1_1_14:45329665-45330565:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.22149658203125	3	360.222188	1077.64473	-2.0411	-0.00073523	0.77597	0.00027952	-1.2651	-0.00045571	360.22242594971704	34.949	0.26897	34.949	34.884	35.153	0					21	8	4	0	0	0	0.67475	1	12400	12400		30.504	30.504	1	854540			11436	10636	7336	7369	11624	11624					0.109017385676907
FQAALRCPQ	9	Unmodified	_FQAALRCPQ_					0	0	0		ENST00000488605.1_1_13:50096192-50101394:+|nuORF	ENST00000488605.1_1_13:50096192-50101394:+|nuORF	ENST00000488605.1_1_13:50096192-50101394:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2664794921875	2	517.266019	1032.51748	0.13276	6.8675E-05	1.0833	0.00056036	1.2161	0.00062904	517.2664709116608	14.284	0.15754	14.284	14.216	14.373	0					10	5	3	0	0	0	0.57706	1	3073	3073		24.203	1.1603	1	474500			11437	10049	7337	7370	11625	11625					0.0025264963119298045
FQALEIDLQ	9	Unmodified	_FQALEIDLQ_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;CON__Q99PS0	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7852783203125	2	538.784764	1075.55498	2.044	0.0011013	-1.0802	-0.00058197	0.96381	0.00051928	538.784135908942	44.034	0.24164	44.034	43.953	44.195	0					22	10	3	0	0	0	0.27123	1	17648	17648		53.089	5.1294	1	291680		+	11438	669	7338	7371	11626	11626					0.020220193778186513
FQAPTAKEM	9	Unmodified	_FQAPTAKEM_					0	0	0		ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;PSD4|p.S882P|1|0.5|ENSG00000125637|chr2:113198759-113198759|T/C|missense_variant	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7525329589844	2	511.75241	1021.49027	-0.13599	-6.9594E-05	-0.71592	-0.00036637	-0.85191	-0.00043597	512.2532829014497	29.601	0.33358	29.601	29.332	29.666	0					16	11	2	0	0	0	0.46194	1	9307	9307		36.447	2.2742	1	74048			11439	3424	7339	7372	11627	11627					-0.01961878699830777
FQAPTAKEM	9	Unmodified	_FQAPTAKEM_					0	0	0		ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;PSD4|p.S882P|1|0.5|ENSG00000125637|chr2:113198759-113198759|T/C|missense_variant	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7516174316406	2	511.75241	1021.49027	0.00086938	4.4491E-07	-0.083775	-4.2872E-05	-0.082906	-4.2427E-05	511.7522656605073	29.842	0.37127	29.842	29.6	29.972	0					22	9	3	0	0	0	0.24334	1	10676	10676		56.434	6.9922	1	394050			11440	3424	7339	7372	11628	11628					-0.01961878699830777
FQAPTAKEM	9	Unmodified	_FQAPTAKEM_					0	0	0		ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;PSD4|p.S882P|1|0.5|ENSG00000125637|chr2:113198759-113198759|T/C|missense_variant	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7525634765625	2	511.75241	1021.49027	-0.44425	-0.00022735	0.25284	0.00012939	-0.19141	-9.7954E-05	511.7524414602037	29.84	0.3601	29.84	29.54	29.9	0					13	7	3	0	0	0	0.27249	1	11058	11058		52.937	8.8199	1	324710			11441	3424	7339	7372	11629	11629					-0.01961878699830777
FQARALTPQ	9	Unmodified	_FQARALTPQ_					0	0	0		ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.5258483886719	3	344.525936	1030.55598	1.5247	0.00052529	-1.7689	-0.00060942	-0.24417	-8.4123E-05	344.5253195995983	15.055	0.16834	15.055	14.945	15.113	0					8	3	3	0	0	0	0.51817	1	3896	3896		30.318	1.1682	1	692240			11442	1152	7340	7373	11630	11630					0.04192278537357197
FQEDDGIPLYL	11	Unmodified	_FQEDDGIPLYL_					0	0	0		nc|ENSG00000236764|O60397|COX7A2P2	nc|ENSG00000236764|O60397|COX7A2P2	nc|ENSG00000236764|O60397|COX7A2P2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2132873535156	3	437.215204	1308.62378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.573	1	14.573	14.073	15.073	0								0	0	0	0.45344	1	3109	3109		25.126	1.7481	1				11443	11781	7341	7374	11631	11631					-0.01818361113123501
FQELREDDFQ	10	Unmodified	_FQELREDDFQ_					0	0	0		TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant;TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant;TLR8|p.Y950Ifs*8|1|0.35|ENSG00000101916|chrX:12921881-12921882|-/A|frameshift_variant;ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant	TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	663.7994995117188	2	663.801674	1325.58879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.167	1	28.167	27.667	28.667	0								0	0	0	0.33107	1	9053	9053		45.972	0.95004	1				11444	2141	7342	7375	11632	11632					-0.060976039211027455
FQEPHFGK	8	Unmodified	_FQEPHFGK_					0	0	0		ENST00000318560.5_1_9:133761568-133761826:+|nuORF	ENST00000318560.5_1_9:133761568-133761826:+|nuORF	ENST00000318560.5_1_9:133761568-133761826:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2456359863281	2	495.245609	988.476666	-0.40944	-0.00020277	0.42303	0.00020951	0.013598	6.7346E-06	495.24581985223244	12.755	0.18657	12.755	12.681	12.868	0					7	5	2	0	0	0	0.66372	1	2754	2754		38.806	38.806	1	840790			11445	8596	7343	7376	11633	11633					-0.01803368416756257
FQGASNLTL	9	Unmodified	_FQGASNLTL_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.75146484375	2	475.750724	949.486896	-0.0033621	-1.5995E-06	0.51285	0.00024399	0.50949	0.00024239	475.750897282696	42.839	0.15359	42.839	42.739	42.892	0					15	9	2	0	0	0	0.34452	1	13568	13568		46.457	2.34	1	133990			11446	757	7344	7377	11634	11634					0.010131945178045498
FQGASNLTL	9	Unmodified	_FQGASNLTL_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.75146484375	2	475.750724	949.486896	0.33882	0.00016119	-0.47905	-0.00022791	-0.14023	-6.6715E-05	475.7505098833281	43.135	0.34713	43.135	43.047	43.394	0					41	19	4	0	0	0	0.04067	1	16283	16283		98.582	24.327	1	627880			11447	757	7344	7377	11635	11635					0.010131945178045498
FQGASNLTL	9	Unmodified	_FQGASNLTL_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7520446777344	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.874	1	42.874	42.374	43.374	0								0	0	0	0.16453	1	14086	14086		56.434	10.482	1				11448	757	7344	7377	11636	11636					0.010131945178045498
FQGASNLTL	9	Unmodified	_FQGASNLTL_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.25189208984375	2	475.750724	949.486896	-0.1193	-5.6758E-05	0.40749	0.00019386	0.28818	0.0001371	475.75088825264896	43.113	0.2293	43.113	43.029	43.258	0					25	11	3	0	0	0	0.18416	1	16871	16871		63.534	10.597	1	321990			11449	757	7344	7377	11637	11637					0.010131945178045498
FQGASNLTL	9	Unmodified	_FQGASNLTL_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7503662109375	2	475.750724	949.486896	-0.074237	-3.5318E-05	0.65739	0.00031275	0.58316	0.00027744	475.7510459329061	42.917	0.18879	42.917	42.814	43.003	0					16	11	2	0	0	0	0.078509	1	14928	14928		85.161	24.189	1	76265			11450	757	7344	7377	11638	11638					0.010131945178045498
FQGASNLTL	9	Unmodified	_FQGASNLTL_					0	0	0		DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant;ENSG00000088205|ENST00000263239|DDX18	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7511291503906	2	475.750724	949.486896	-0.61781	-0.00029392	0.31503	0.00014988	-0.30278	-0.00014405	475.75082862331357	43.043	0.32031	43.043	42.937	43.257	0					21	9	4	0	0	0	0.019258	1	17201	17201		123.21	40.968	1	1498100			11451	757	7344	7377	11639	11639					0.010131945178045498
FQGGWDLSL	9	Unmodified	_FQGGWDLSL_					0	0	0		ENST00000334274.8_2_11:33094419-33094551:+|nuORF	ENST00000334274.8_2_11:33094419-33094551:+|nuORF	ENST00000334274.8_2_11:33094419-33094551:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7513122558594	2	511.750724	1021.4869	3.1073	0.0015902	-2.1912	-0.0011214	0.91608	0.0004688	511.7495652101823	29.728	0.51531	29.728	29.515	30.031	0					22	10	4	0	0	0	0.16002	1	10935	10935		66.429	0.6261	1	980430			11452	8691	7345	7378	11640	11640					-0.022988054821894366
FQGSGLEEGI	10	Unmodified	_FQGSGLEEGI_					0	0	0			REV__ENST00000558482.5_1_15:64221904-64332460:-|nuORF	REV__ENST00000558482.5_1_15:64221904-64332460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7508544921875	2	518.750921	1035.48729	0.51535	0.00026734	0.05333	2.7665E-05	0.56868	0.000295	518.7509322573487	18.864	1.408	18.864	18.589	19.997	0					112	42	4	0	0	0	0.47859	1	4695	4695		47.657	1.7054	1	5996900	+		11453	12669	7346	7379	11641	11641					-0.029034305530103666
FQHHRRAQLS	10	Unmodified	_FQHHRRAQLS_					0	0	0			REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	640.3412475585938	2	640.341969	1278.66939	0.71336	0.0004568	-1.7609	-0.0011276	-1.0476	-0.00067081	640.3408776835029	23.601	0.1763	23.601	23.515	23.691	0					10	4	3	0	0	0	0.58189	1	7846	7846		36.447	4.9169	1	417980	+		11454	13654	7347	7380	11642	11642					0.041197667031156016
FQHHRRAQLS	10	Unmodified	_FQHHRRAQLS_					0	0	0			REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	640.3414306640625	2	640.341969	1278.66939	-0.74711	-0.00047841	-0.22456	-0.00014379	-0.97167	-0.0006222	640.3417531489059	23.526	0.56223	23.526	23.418	23.981	0					24	11	3	0	0	0	0.32758	1	8001	8001		64.207	11.271	1	3131000	+		11455	13654	7347	7380	11643	11643					0.041197667031156016
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2500305175781	2	467.250695	932.486836	0.82618	0.00038603	-1.293	-0.00060414	-0.46679	-0.00021811	467.2501640188258	24.442	0.12052	24.442	24.376	24.497	0					5	3	2	0	0	0	0.54629	1	7230	7230		55.504	10.973	1	29323			11456	8013	7348	7381	11644	11644					0.017892393084707692
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2503967285156	2	467.250695	932.486836	0.047814	2.2341E-05	-1.3054	-0.00060997	-1.2576	-0.00058763	467.25025285798677	24.437	0.18479	24.437	24.367	24.552	0					8	5	2	0	0	0	0.29152	1	7223	7223		85.359	25.066	1	85482			11457	8013	7348	7381	11645	11645					0.017892393084707692
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2509765625	2	467.250695	932.486836	0.29242	0.00013663	0.1841	8.6021E-05	0.47652	0.00022265	467.2509079415903	24.717	0.22573	24.717	24.627	24.852	0					10	5	3	0	0	0	0.25485	1	8347	8347		97.473	34.494	1	330560			11458	8013	7348	7381	11646	11646					0.017892393084707692
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.25042724609375	2	467.250695	932.486836	0.37089	0.0001733	-0.85196	-0.00039808	-0.48107	-0.00022478	467.2503307899915	24.701	0.37688	24.701	24.615	24.992	0					20	9	4	0	0	0	0.26534	1	8358	8358		94.006	49.475	1	799130			11459	8013	7348	7381	11647	11647					0.017892393084707692
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2509460449219	2	467.250695	932.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.469	1	24.469	23.969	24.969	0								0	0	0	1.7419	1	7494	7494		73.975	26.059	1				11460	8013	7348	7381	11648	11648					0.017892393084707692
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.25018310546875	2	467.250695	932.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.691	1	24.691	24.191	25.191	0								0	0	0	1.7419	1	8671	8671		102.77	42.479	1				11461	8013	7348	7381	11649	11649					0.017892393084707692
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2502746582031	2	467.250695	932.486836	-0.19076	-8.9131E-05	-0.81878	-0.00038257	-1.0095	-0.00047171	467.25011891419973	24.536	0.18692	24.536	24.439	24.626	0					7	4	2	0	0	0	0.26534	1	7669	7669		94.006	36.195	1	86032			11462	8013	7348	7381	11650	11650					0.017892393084707692
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2502136230469	2	467.250695	932.486836	-0.50628	-0.00023656	-0.28159	-0.00013157	-0.78787	-0.00036813	467.25050168117957	24.636	0.49791	24.636	24.53	25.028	0					20	10	3	0	0	0	0.24714	1	8533	8533		106.42	23.128	1	1453500			11463	8013	7348	7381	11651	11651					0.017892393084707692
FQHVGQTL	8	Unmodified	_FQHVGQTL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.245361328125	2	465.245609	928.476666	-0.43963	-0.00020453	0.12844	5.9754E-05	-0.31119	-0.00014478	465.2455933683719	27.779	0.17354	27.779	27.708	27.882	0					10	5	2	0	0	0	0.35045	1	8607	8607		76.774	21.27	1	219810			11464	2718	7349	7382	11652	11652					0.009566315832444161
FQHVGQTL	8	Unmodified	_FQHVGQTL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2454528808594	2	465.245609	928.476666	-0.68161	-0.00031711	0.14121	6.5695E-05	-0.5404	-0.00025142	465.2458230783784	28.078	0.25493	28.078	27.953	28.208	0					15	6	4	0	0	0	0.23898	1	9869	9869		116.9	45.608	1	1014600			11465	2718	7349	7382	11653	11653					0.009566315832444161
FQHVGQTL	8	Unmodified	_FQHVGQTL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2454528808594	2	465.245609	928.476666	-0.8265	-0.00038453	0.16148	7.5126E-05	-0.66502	-0.0003094	465.24574694039677	27.813	0.23133	27.813	27.735	27.966	0					14	8	3	0	0	0	0.37144	1	8903	8903		74.255	8.4519	1	320110			11466	2718	7349	7382	11654	11654					0.009566315832444161
FQHVGQTL	8	Unmodified	_FQHVGQTL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2454528808594	2	465.245609	928.476666	0.67805	0.00031546	-1.6094	-0.00074878	-0.93139	-0.00043333	465.2451740261017	28.047	0.29414	28.047	27.947	28.241	0					16	6	4	0	0	0	0.24425	1	10242	10242		111.65	31.709	1	1572300			11467	2718	7349	7382	11655	11655					0.009566315832444161
FQKGGLQIK	9	Unmodified	_FQKGGLQIK_					0	0	0		nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.8060302734375	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.383	1	28.383	27.883	28.883	0								0	0	0	0.29356	1	8860	8860		21.96	0	1				11468	3992	7350	7383	11656	11656					0.08902039576855714
FQLSLDKCW	9	Unmodified	_FQLSLDKCW_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|282|2|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|282|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.2813110351562	2	570.281334	1138.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.654	1	36.654	36.154	37.154	0								0	0	0	0.35507	1	13840	13840		24.203	1.1603	1		+		11469	20729	7351	7384	11657	11657					-0.015616167744155973
FQNAQAGSN	9	Unmodified	_FQNAQAGSN_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7139587402344	2	468.712131	935.409708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.278	1	46.278	45.778	46.778	0								0	0	0	0.27025	1	18522	18522		40.778	12.524	1				11470	3209	7352	7385	11658	11658					-0.06058023698517445
FQNDVKANTY	10	Unmodified	_FQNDVKANTY_					0	0	0		HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN;ENST00000309900.11_1_16:70928350-70955090:-|nuORF	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2904663085938	2	600.288202	1198.56185	3.1217	0.0018739	0.35757	0.00021465	3.4793	0.0020886	600.2885519693335	49.776	1.0608	49.776	49.271	50.331	0					71	50	2	0	0	0	0.49411	1	19551	19551		45.972	1.8554	1	64936			11471	5216	7353	7386	11659	11659					-0.029486677416116436
FQNFIEIF	8	Unmodified	_FQNFIEIF_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant;MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant;MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.268798828125	2	529.271293	1056.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.438	1	38.438	37.938	38.938	0								0	0	0	1.7419	1	12965	12965		45.952	8.9235	1				11472	3733	7354	7387	11660	11660					0.002029555572789832
FQNTTLNK	8	Unmodified	_FQNTTLNK_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.255859375	2	483.256174	964.497795	0.057226	2.7655E-05	-0.54235	-0.00026209	-0.48512	-0.00023444	483.2558949348098	25.15	0.57196	25.15	25.014	25.586	0					50	19	4	0	0	0	0.68432	1	7693	7693		35.618	5.1146	1	2876600	+		11473	16964	7355	7388	11661	11661					0.01412596892100737
FQPERPDAQ	9	Unmodified	_FQPERPDAQ_					0	0	0			REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant	REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2639770507812	2	544.261988	1086.50942	1.9714	0.0010729	1.444	0.00078589	3.4153	0.0018588	544.2628658584384	16.955	0.16792	16.955	16.896	17.064	0					8	3	3	0	0	0	0.17854	1	4963	4963		64.207	7.4862	1	831050	+		11474	12697	7356	7389	11662	11662					-0.03037206084582067
FQPFAMHLF	9	Unmodified	_FQPFAMHLF_					0	0	0			REV__nc|ENSG00000101557|P54578-2|USP14	REV__nc|ENSG00000101557|P54578-2|USP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2799682617188	2	569.281137	1136.54772	0.18707	0.0001065	-1.3861	-0.00078906	-1.199	-0.00068256	569.2802612325019	10.979	0.070665	10.979	10.944	11.015	0					5	3	2	0	0	0	0.61124	1	2155	2155		12.959	3.2535	1	35673	+		11475	13606	7357	7390	11663	11663					-0.015089917036220868
FQPPSNVTL	9	Unmodified	_FQPPSNVTL_					0	0	0			REV__IGSF9|p.V341*|1|0.31|ENSG00000085552|chr1:159934273-159934273|C/-|frameshift_variant	REV__IGSF9|p.V341*|1|0.31|ENSG00000085552|chr1:159934273-159934273|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.76483154296875	2	501.766374	1001.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.825	1	29.825	29.325	30.325	0								0	0	0	0.3245	1	9443	9443		30.318	3.5216	1		+		11476	13358	7358	7391	11664	11664					0.01749767551905279
FQPREDMLQ	9	Unmodified	_FQPREDMLQ_					0	0	0			REV__SPTB|p.K1343R|1|0.33|ENSG00000070182|chr14:64782528-64782528|T/C|missense_variant	REV__SPTB|p.K1343R|1|0.33|ENSG00000070182|chr14:64782528-64782528|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.280029296875	2	582.279323	1162.54409	-0.17826	-0.00010379	-1.0908	-0.00063518	-1.2691	-0.00073897	582.2787434005476	37.541	0.1394	37.541	37.46	37.6	0					12	7	2	0	0	0	0.27249	1	12677	12677		52.937	10.072	1	113590	+		11477	21601	7359	7392	11665	11665					-0.030677062681206735
FQPRGLEGP	9	Unmodified	_FQPRGLEGP_					0	0	0		IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant;IGSF9B|p.T1083Hfs*72|2|0.42|ENSG00000080854|chr11:133920478-133920479|-/G|frameshift_variant;nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant	IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.765625	2	500.764166	999.513779	2.9222	0.0014633	-0.21525	-0.00010779	2.707	0.0013556	500.7641721806296	14.584	0.46976	14.584	14.525	14.995	0					22	9	4	0	0	0	0.036372	1	3671	3671		102.77	102.77	1	2177700			11478	1648	7360	7393	11666	11666					0.014003031290144463
FQQEREAF	8	Unmodified	_FQQEREAF_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7517700195312	2	527.751256	1053.48796	0.26514	0.00013993	0.38475	0.00020305	0.64989	0.00034298	527.7514910543399	32.465	0.34803	32.465	32.342	32.69	0					38	14	4	0	0	0	0.61938	1	10808	10808		45.952	1.4209	1	593070			11479	5610	7361	7394	11667	11667					-0.03664591113283677
FQQFFASCSL	10	Carbamidomethyl (C)	_FQQFFASC(Carbamidomethyl (C))SL_	FQQFFASC(1)SL		FQQFFASC(64)SL		0	1	0			REV__nc|ENSG00000121671|Q49AN0-2|CRY2	REV__nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.19000244140625	3	412.190225	1233.54884	1.0728	0.00044219	-2.2942	-0.00094565	-1.2214	-0.00050346	412.1894705692369	24.899	0.31168	24.899	24.794	25.106	0					21	6	5	0	0	0	0.3337	1	8782	8782		63.534	16.306	1	1203600	+		11480	14314	7362	7395	11668	11668	533				-0.058588221253558004
FQQIERQEQLL	11	Unmodified	_FQQIERQEQLL_					0	0	0		nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	716.3828125	2	716.383165	1430.75178	-1.6554	-0.0011859	0.19236	0.00013781	-1.463	-0.0010481	716.3831630102572	30.981	0.29346	30.981	30.88	31.174	0					19	6	4	0	0	0	0.75295	1	11619	11619		22.58	2.5829	1	884140			11481	2051	7363	7396	11669	11669					0.053631992007922236
FQRAITGASL	10	Unmodified	_FQRAITGASL_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.29931640625	2	532.298373	1062.58219	1.713	0.0009118	-1.8004	-0.00095833	-0.0874	-4.6523E-05	532.2981808083246	32.602	0.20055	32.602	32.488	32.688	0					8	5	2	0	0	0	0.20981	1	12394	12394		78.264	21.543	1	453610			11482	2846	7364	7397	11670	11670					0.05340547708851773
FQSTNPSFK	9	Unmodified	_FQSTNPSFK_					0	0	0			REV__BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	REV__BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2617797851562	2	528.261456	1054.50836	0.28539	0.00015076	0.55771	0.00029462	0.84311	0.00044538	528.2617195027844	30.766	0.19027	30.766	30.664	30.854	0					9	4	3	0	0	0	0.02953	1	11522	11522		109.48	0	1	401800	+		11483	12307	7365	7398	11671	11671					-0.016714204534537203
FQTSSTAFSKK	11	Unmodified	_FQTSSTAFSKK_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	616.3192138671875	2	616.319502	1230.62445	0.16962	0.00010454	-1.126	-0.000694	-0.95642	-0.00058946	616.3188060127943	12.753	0.17233	12.753	12.661	12.833	0					18	9	3	0	0	0	0.69004	1	2447	2447		19.104	0	1	133890	+		11484	12727	7366	7399	11672	11672					0.018364783265496953
FQVFGATFER	10	Unmodified	_FQVFGATFER_					0	0	0			REV__ENSG00000179914|ENST00000326245|ITLN1	REV__ENSG00000179914|ENST00000326245|ITLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.3057250976562	2	601.303655	1200.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.912	1	31.912	31.412	32.412	0								0	0	0	0.38467	1	12080	12080		23.523	0	1		+		11485	16793	7367	7400	11673	11673					0.00048530363278587174
FQVLQPQVQ	9	Unmodified	_FQVLQPQVQ_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8695373535156	3	362.869591	1085.58694	0.73553	0.0002669	-0.99735	-0.00036191	-0.26182	-9.5008E-05	362.86919920205025	23.184	0.3196	23.184	23.049	23.369	0					12	7	2	0	0	0	0.099922	1	7627	7627		75.043	11.509	1	1986100			11486	7639	7368	7401	11674	11674					0.04757431851612637
FQVLQPQVQ	9	Unmodified	_FQVLQPQVQ_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.86956787109375	3	362.869591	1085.58694	1.13	0.00041003	-1.4626	-0.00053075	-0.33266	-0.00012071	362.8690546794221	23.077	0.80947	23.077	22.922	23.732	0					27	16	4	0	0	0	0.099922	1	7760	7760		75.043	2.1641	1	4047300			11487	7639	7368	7401	11675	11675					0.04757431851612637
FQVNHTVAL	9	Unmodified	_FQVNHTVAL_					0	0	0		nc|ENSG00000130204|O96008-2|TOMM40;ENSG00000130204|ENST00000426677|TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.779296875	2	514.779816	1027.54508	0.024795	1.2764E-05	-0.80361	-0.00041368	-0.77882	-0.00040092	514.7791646970627	35.942	0.20229	35.942	35.855	36.057	0					11	5	3	0	0	0	0.51991	1	13523	13523		30.318	6.115	1	191020			11488	3626	7369	7402	11676	11676					0.03240876163090434
FQVNHTVAL	9	Unmodified	_FQVNHTVAL_					0	0	0		nc|ENSG00000130204|O96008-2|TOMM40;ENSG00000130204|ENST00000426677|TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.77978515625	2	514.779816	1027.54508	-0.49221	-0.00025338	0.91537	0.00047121	0.42316	0.00021783	514.7799425282738	35.955	0.17714	35.955	35.842	36.019	0					11	5	3	0	0	0	0.27249	1	13957	13957		52.937	1.6012	1	253530			11489	3626	7369	7402	11677	11677					0.03240876163090434
FQYSKSPSL	9	Unmodified	_FQYSKSPSL_					0	0	0		CLTC-CEP95|1|fusion;ENST00000553956.6_1_17:62527116-62533894:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95	CLTC-CEP95|1|fusion	CLTC-CEP95|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7723388671875	2	528.771657	1055.52876	1.2396	0.00065546	-1.2507	-0.00066131	-0.011065	-5.8509E-06	529.2722335116878	31.696	0.12494	31.696	31.593	31.718	0					5	3	2	0	0	0	0.38666	1	10945	10945		42.864	13.023	1	49331			11490	562	7370	7403	11678	11678					0.003217502063534994
FQYTISNQL	9	Unmodified	_FQYTISNQL_					0	0	0		ENST00000540651.5_1_1:228286658-228286874:+|nuORF	ENST00000540651.5_1_1:228286658-228286874:+|nuORF	ENST00000540651.5_1_1:228286658-228286874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2815551757812	2	557.282389	1112.55022	0.11799	6.5755E-05	-1.2723	-0.00070901	-1.1543	-0.00064325	557.2817424399208	13.947	0.096619	13.947	13.899	13.995	0					10	4	3	0	0	0	0.14578	1	2940	2940		52.937	6.9645	1	156460			11491	10538	7371	7404	11679	11679					-0.001548647649542545
FRAAALPMH	9	Unmodified	_FRAAALPMH_					0	0	0			REV__WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	REV__WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2724914550781	2	507.271104	1012.52766	2.9427	0.0014928	-0.60366	-0.00030622	2.3391	0.0011865	507.270694505907	28.618	0.76339	28.618	28.228	28.992	0					38	15	4	0	0	0	0.4966	1	10364	10364		18.324	0	1	1468900	+		11492	16657	7372	7405	11680	11680					0.021892573564400664
FRALGLRHL	9	Unmodified	_FRALGLRHL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000565092.6_1_16:1496634-1499128:-|nuORF;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.5567932128906	3	361.55757	1081.65088	-0.93561	-0.00033828	0.032764	1.1846E-05	-0.90284	-0.00032643	361.55761117858304	27.012	0.20864	27.012	26.963	27.171	0					14	7	3	0	0	0	0.55379	1	8555	8555		26.693	0	1	69680			11493	2227	7373	7406	11681	11681					0.11332256799209972
FRCGGNKK	8	Unmodified	_FRCGGNKK_					0	0	0		nc|ENSG00000137731|P54710-2|FXYD2;ENSG00000137731|ENST00000292079|FXYD2;ENST00000534383.5_1_11:117691389-117694973:-|nuORF	nc|ENSG00000137731|P54710-2|FXYD2	nc|ENSG00000137731|P54710-2|FXYD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2405090332031	2	455.239804	908.465055	-0.5811	-0.00026454	1.2558	0.00057167	0.67466	0.00030713	455.24033272657806	14.492	0.20876	14.492	14.327	14.536	0					12	5	4	0	0	0	0.68754	1	3532	3532		35.201	3.2459	1	385410			11494	4188	7374	7407	11682	11682					0.007161112882499765
FRCGWVTF	8	Unmodified	_FRCGWVTF_					0	0	0		SRRT|p.R464C|1|0.08|ENSG00000087087|chr7:100885873-100885873|C/T|missense_variant	SRRT|p.R464C|1|0.08|ENSG00000087087|chr7:100885873-100885873|C/T|missense_variant	SRRT|p.R464C|1|0.08|ENSG00000087087|chr7:100885873-100885873|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2456359863281	2	508.244555	1014.47456	2.9645	0.0015067	-0.32644	-0.00016591	2.638	0.0013408	508.24420573477124	28.335	0.41372	28.335	28.177	28.591	0					12	8	2	0	0	0	0.5676	1	10266	10266		53.351	8.8204	1	867770			11495	22491	7375	7408	11683	11683					-0.032101204262289684
FRDKNIAI	8	Unmodified	_FRDKNIAI_					0	0	0			REV__tr|U7STJ4|U7STJ4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01367PE=3SV=1	REV__tr|U7STJ4|U7STJ4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01367PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	326.19097900390625	3	326.190665	975.550165	-0.024769	-8.0794E-06	0.21866	7.1326E-05	0.1939	6.3247E-05	326.1906829884232	29.402	0.13494	29.402	29.337	29.472	0					6	3	2	0	0	0	0.76283	1	9888	9888		25.45	1.2474	1	46160	+		11496	21922	7376	7409	11684	11684					0.061411800256905735
FREDSVVLS	9	Unmodified	_FREDSVVLS_					0	0	0		URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant;nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant	URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2747802734375	2	526.274564	1050.53457	0.1001	5.2683E-05	0.1685	8.8678E-05	0.26861	0.00014136	526.274870571004	40.912	0.35007	40.912	40.795	41.145	0					23	11	3	0	0	0	0.27249	1	15561	15561		52.937	0	1	362650			11497	2448	7377	7410	11685	11685					0.011328487180207958
FRELTELKT	9	Unmodified	_FRELTELKT_					0	0	0		ENST00000379061.8_1_17:26708312-26722930:+|nuORF;nc|ENSG00000004139|Q6SZW1-2|SARM1;ENSG00000004139|ENST00000585482|SARM1	ENST00000379061.8_1_17:26708312-26722930:+|nuORF	ENST00000379061.8_1_17:26708312-26722930:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.8204345703125	2	568.819138	1135.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.182	1	23.182	22.682	23.682	0								0	0	0	0.3693	1	7639	7639		19.997	0.73409	1				11498	937	7378	7411	11686	11686					0.061336836774898984
FREQSECMI	9	Unmodified	_FREQSECMI_					0	0	0		nc|ENSG00000142606|Q495T6-3|MMEL1;ENSG00000142606|ENST00000378412|MMEL1	nc|ENSG00000142606|Q495T6-3|MMEL1	nc|ENSG00000142606|Q495T6-3|MMEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	381.50347900390625	3	381.503815	1141.48961	-1.1353	-0.00043314	0.55377	0.00021127	-0.58156	-0.00022187	381.50417642515663	29.476	0.24014	29.476	29.357	29.597	0					21	9	3	0	0	0	0.45358	1	9576	9576		29.17	4.0441	1	262320			11499	4500	7379	7412	11687	11687					-0.07547041411203281
FRGMEAKKM	9	Oxidation (M)	_FRGMEAKKM(Oxidation (M))_		FRGMEAKKM(1)		FRGM(-110)EAKKM(110)	0	0	1			REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.282958984375	2	557.280812	1112.54707	3.4949	0.0019476	-0.70053	-0.00039039	2.7944	0.0015572	557.2801783223554	32.145	0.97292	32.145	31.984	32.956	0					46	19	5	0	0	0	0.025517	1	12078	12078		113.41	35.148	2	10468000	+		11500	14736	7380	7413	11688	11688		557			-0.00470154414983881
FRGMFAGGL	9	Unmodified	_FRGMFAGGL_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2453918457031	2	478.244555	954.474557	-0.32582	-0.00015582	2.1981	0.0010512	1.8723	0.00089541	478.24571519415326	29.261	0.18051	29.261	29.17	29.351	0					6	4	2	0	0	0	0.30268	1	9831	9831		50.025	3.2581	1	91859			11501	1948	7381	7414	11689	11689					-0.004501204262169267
FRGRKQARRVG	11	Unmodified	_FRGRKQARRVG_					0	0	0		nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2686767578125	3	444.269083	1329.78542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.307	1	19.307	18.807	19.807	0								0	0	0	0.45674	1	5217	5217		24.232	0.85391	1				11502	11761	7382	7415	11690	11690					0.13371710273827375
FRIFVSWKK	9	Unmodified	_FRIFVSWKK_					0	0	0			REV__ENST00000469733.5_1_1:2129472-2132643:-|nuORF	REV__ENST00000469733.5_1_1:2129472-2132643:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.8609008789062	2	605.858401	1209.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.321	1	28.321	27.821	28.821	0								0	0	0	0.34101	1	8834	8834		19.997	8.4858	1		+		11503	19459	7383	7416	11691	11691					0.10578580773244539
FRKIAGSKI	9	Unmodified	_FRKIAGSKI_					0	0	0			REV__tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	REV__tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.55010986328125	3	340.550193	1018.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.899	1	22.899	22.399	23.399	0								0	0	0	0.35737	1	6806	6806		23.523	0.48021	1		+		11504	21943	7384	7417	11692	11692					0.12018032330797723
FRLQATFN	8	Unmodified	_FRLQATFN_					0	0	0			REV__ENSG00000183117|ENST00000635120|CSMD1	REV__ENSG00000183117|ENST00000635120|CSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7661437988281	2	498.766709	995.518865	-2.1936	-0.0010941	1.3343	0.0006655	-0.85928	-0.00042858	498.7672607321742	36.512	0.25149	36.512	36.407	36.659	0					23	12	3	0	0	0	0.61925	1	13070	13070		45.972	5.9141	1	104460	+		11505	16916	7385	7418	11693	11693					0.020926069916072265
FRPFIATMLA	10	Unmodified	_FRPFIATMLA_					0	0	0			REV__nc|ENSG00000126091|Q11203-18|ST3GAL3	REV__nc|ENSG00000126091|Q11203-18|ST3GAL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.5519714355469	3	389.551205	1165.63179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.469	1	17.469	16.969	17.969	0								0	0	0	0.4201	1	5046	5046		22.58	1.7425	1		+		11506	14457	7386	7419	11694	11694					0.05559539393311752
FRPKKMPLI	9	Unmodified	_FRPKKMPLI_					0	0	0			REV__ENST00000590607.1_1_19:29704218-29706237:+|nuORF	REV__ENST00000590607.1_1_19:29704218-29706237:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.2359924316406	3	377.235328	1128.68416	0.80756	0.00030464	1.2052	0.00045465	2.0128	0.00075929	377.23576628939645	16.11	0.35481	16.11	16.021	16.375	0					11	8	2	0	0	0	0.45358	1	4313	4313		37.159	3.0726	1	266350	+		11507	20520	7387	7420	11695	11695					0.12496122526931686
FRPVIRGGT	9	Unmodified	_FRPVIRGGT_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7947692871094	2	501.795801	1001.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.24	1	37.24	36.74	37.74	0								0	0	0	0.3693	1	14555	14555		19.997	0.89325	1		+		11508	15450	7388	7421	11696	11696					0.07632288636921203
FRQHDGYI	8	Unmodified	_FRQHDGYI_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2503662109375	2	518.253966	1034.49338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.99	1	13.99	13.49	14.49	0								0	0	0	1.7419	1	3310	3310		47.916	1.9434	1		+		11509	15583	7389	7422	11697	11697					-0.02248867530829557
FRQRILAPCKL	11	Unmodified	_FRQRILAPCKL_					0	0	0		ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	672.8994140625	2	672.900274	1343.786	-1.3468	-0.00090627	0.74246	0.0004996	-0.60435	-0.00040667	672.9007280689082	53.225	0.19822	53.225	53.086	53.284	0					18	12	2	0	0	0	0.7326	1	19479	19479		24.519	3.682	1	219300			11510	4691	7390	7423	11698	11698					0.12785368878667214
FRSIKQSM	8	Unmodified	_FRSIKQSM_					0	0	0		nc|ENSG00000183484|Q9UNW8-2|GPR132;nc|ENSG00000183484|Q9UNW8-3|GPR132;ENSG00000183484|ENST00000329797|GPR132	nc|ENSG00000183484|Q9UNW8-2|GPR132	nc|ENSG00000183484|Q9UNW8-2|GPR132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7699279785156	2	498.768394	995.522236	2.9173	0.0014551	0.097402	4.8581E-05	3.0147	0.0015036	498.7685785775723	28.357	1.0154	28.357	27.976	28.992	0					44	20	4	0	0	0	0.41701	1	10244	10244		68.787	2.8894	1	951170			11511	6961	7391	7424	11699	11699					0.02429533773977255
FRSPAAPSP	9	Unmodified	_FRSPAAPSP_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2451171875	2	465.245609	928.476666	0.67828	0.00031557	-1.6728	-0.00077828	-0.99456	-0.00046271	465.2447723379006	30.593	0.19719	30.593	30.496	30.694	0					12	4	3	0	0	0	0.42902	1	11463	11463		39.253	1.4413	1	772810			11512	2570	7392	7425	11700	11700					0.009566315832330474
FRSRCPGPAR	10	Unmodified	_FRSRCPGPAR_					0	0	0			REV__ENST00000455270.5_1_3:186857033-186857162:-|nuORF	REV__ENST00000455270.5_1_3:186857033-186857162:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8009643554688	2	573.801091	1145.58763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.198	1	50.198	49.698	50.698	0								0	0	0	0.3805	1	19826	19826		36.447	8.5645	1		+		11513	19340	7393	7426	11701	11701					0.02065948019685493
FRSRFSRC	8	Unmodified	_FRSRFSRC_					0	0	0		ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	ENSG00000130695|ENST00000451429|CEP85	ENSG00000130695|ENST00000451429|CEP85	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.77099609375	2	529.76926	1057.52397	3.4455	0.0018253	-0.39143	-0.00020737	3.0541	0.001618	529.7691391329486	42.512	0.33586	42.512	42.285	42.621	0					20	9	4	0	0	0	0.5535	1	16958	16958		54.776	5.3348	1	300040			11514	3658	7394	7427	11702	11702					-0.0024941241740634723
FRSRRGPR	8	Unmodified	_FRSRRGPR_					0	0	0			REV__ENST00000505713.1_1_4:106394627-106395207:-|nuORF	REV__ENST00000505713.1_1_4:106394627-106395207:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.302490234375	2	516.302116	1030.58968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.488	1	11.488	10.988	11.988	0								0	0	0	1.7419	1	2224	2224		25.45	3.4903	1		+		11515	19836	7395	7428	11703	11703					0.07560744819784304
FRTGSEPAL	9	Unmodified	_FRTGSEPAL_					0	0	0		ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.2562561035156	2	489.256174	976.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.63	1	29.63	29.13	30.13	0								0	0	0	0.3119	1	9372	9372		32.812	2.3088	1				11516	4208	7396	7429	11704	11704					0.00860596892096055
FRTPTADLN	9	Unmodified	_FRTPTADLN_					0	0	0		tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7672119140625	2	517.766906	1033.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.942	1	38.942	38.442	39.442	0								0	0	0	0.33029	1	14809	14809		29.17	0	1				11517	22707	7397	7430	11705	11705					0.0038398192079966975
FRVFRVGPGY	10	Unmodified	_FRVFRVGPGY_					0	0	0			REV__ENSG00000116661|ENST00000354287|FBXO2	REV__ENSG00000116661|ENST00000354287|FBXO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.3296508789062	2	599.330008	1196.64546	-0.081377	-4.8772E-05	-0.80268	-0.00048107	-0.88406	-0.00052984	599.3294382357266	41.466	0.86247	41.466	40.938	41.8	0					71	41	2	0	0	0	0.64178	1	15852	15852		29.15	5.6269	1	107490	+		11518	14151	7398	7431	11706	11706					0.0550053321676387
FRVLVSGA	8	Unmodified	_FRVLVSGA_					0	0	0		ENST00000533812.6_1_11:130716031-130716900:-|nuORF	ENST00000533812.6_1_11:130716031-130716900:-|nuORF	ENST00000533812.6_1_11:130716031-130716900:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.7529296875	2	424.75307	847.491587	-0.37263	-0.00015827	0.096829	4.1128E-05	-0.2758	-0.00011715	424.753088680019	30.175	0.4116	30.175	29.997	30.408	0					16	8	3	0	0	0	0.52345	1	11190	11190		57.811	11.859	1	304900			11519	10466	7399	7432	11707	11707					0.061741234512510346
FSAESSRSL	9	Unmodified	_FSAESSRSL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2430114746094	2	492.243264	982.471974	-0.54819	-0.00026984	-0.12924	-6.3619E-05	-0.67743	-0.00033346	492.243361619235	26.531	0.27161	26.531	26.356	26.628	0					11	6	3	0	0	0	0.12278	1	9174	9174		74.165	14.047	1	386890			11520	2991	7400	7433	11708	11708					-0.019962973501833403
FSAESSRSL	9	Unmodified	_FSAESSRSL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2420349121094	2	492.243264	982.471974	-1.2646	-0.00062249	0.77513	0.00038155	-0.48947	-0.00024094	492.24352662184486	26.301	0.23952	26.301	26.177	26.416	0					18	7	3	0	0	0	0.18416	1	8235	8235		63.534	15.574	1	171930			11521	2991	7400	7433	11709	11709					-0.019962973501833403
FSAESSRSL	9	Unmodified	_FSAESSRSL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.242919921875	2	492.243264	982.471974	0.58701	0.00028895	-1.1185	-0.00055056	-0.53146	-0.00026161	492.2427350729859	26.568	0.26768	26.568	26.41	26.677	0					13	5	3	0	0	0	0.12278	1	9536	9536		74.165	26.205	1	1132000			11522	2991	7400	7433	11710	11710					-0.019962973501833403
FSAESSRSL	9	Unmodified	_FSAESSRSL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2428894042969	2	492.243264	982.471974	-0.029175	-1.4361E-05	-0.08314	-4.0925E-05	-0.11232	-5.5286E-05	492.2433297613287	26.387	0.1891	26.387	26.289	26.478	0					9	4	3	0	0	0	0.061298	1	8481	8481		91.265	13.001	1	149020			11523	2991	7400	7433	11711	11711					-0.019962973501833403
FSAESSRSL	9	Unmodified	_FSAESSRSL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.24310302734375	2	492.243264	982.471974	-2.6551	-0.001307	2.2544	0.0011097	-0.40075	-0.00019727	492.24427341804864	26.368	0.14985	26.368	26.276	26.426	0					9	3	3	0	0	0	0.11411	1	8475	8475		76.17	10.704	1	171730			11524	2991	7400	7433	11712	11712					-0.019962973501833403
FSAESSRSL	9	Unmodified	_FSAESSRSL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2429504394531	2	492.243264	982.471974	0.83725	0.00041213	-1.0894	-0.00053623	-0.2521	-0.0001241	492.24267173171955	26.513	0.32191	26.513	26.332	26.654	0					17	6	4	0	0	0	0.029571	1	9379	9379		109.44	32.121	1	1233900			11525	2991	7400	7433	11713	11713					-0.019962973501833403
FSAHALKL	8	Unmodified	_FSAHALKL_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;FAM120A|p.V551Sfs*6|1|0.21|ENSG00000048828|chr9:93529491-93529491|C/-|frameshift_variant;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7607421875	2	443.760895	885.507237	-0.48809	-0.00021659	0.66286	0.00029415	0.17478	7.7558E-05	443.76092733644157	31.107	0.16358	31.107	31.027	31.19	0					6	3	2	0	0	0	0.3961	1	11597	11597		71.296	5.4925	1	167300			11526	1234	7401	7434	11714	11714					0.0599040996827398
FSANGRPL	8	Unmodified	_FSANGRPL_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.233642578125	2	431.232502	860.450451	0.76973	0.00033193	4.3602	0.0018802	5.1299	0.0022122	431.23417133047354	26.984	0.3791	26.984	26.886	27.265	0					16	9	2	0	0	0	0.32815	1	9400	9400		79.451	29.426	1	368070			11527	4886	7402	7435	11715	11715					0.014643624117411491
FSARKSRR	8	Unmodified	_FSARKSRR_					0	0	0		ENST00000265165.5_1_4:109088997-109089327:-|nuORF	ENST00000265165.5_1_4:109088997-109089327:-|nuORF	ENST00000265165.5_1_4:109088997-109089327:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5338439941406	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.468	1	55.468	54.968	55.968	0								0	0	0	1.7419	1	19955	19955		20.947	0	1				11528	8346	7403	7436	11716	11716					0.07541922725658878
FSARVTLAK	9	Unmodified	_FSARVTLAK_					0	0	0		ENST00000377424.8_1_1:9129622-9129694:-|nuORF	ENST00000377424.8_1_1:9129622-9129694:-|nuORF	ENST00000377424.8_1_1:9129622-9129694:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7980651855469	2	496.798009	991.581465	3.4037	0.001691	-3.2717	-0.0016254	0.13203	6.5592E-05	496.7963912020582	29.046	0.1583	29.046	28.966	29.125	0					10	6	2	0	0	0	0.24334	1	9413	9413		56.434	15.656	1	43137			11529	9052	7404	7437	11717	11717					0.08533753059816718
FSASLGRG	8	Unmodified	_FSASLGRG_					0	0	0			REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.7113037109375	2	397.711402	793.408252	-0.6316	-0.00025119	0.47835	0.00019024	-0.15325	-6.0949E-05	397.71156206356255	23.989	0.16567	23.989	23.931	24.096	0					5	3	2	0	0	0	0.65276	1	8226	8226		40.573	3.4135	1	273790	+		11530	18169	7405	7438	11718	11718					0.003283870033897074
FSCCLTANTGV	11	Unmodified	_FSCCLTANTGV_					0	0	0			REV__CD276|p.D45N|1|0.33|ENSG00000103855|chr15:73702308-73702308|G/A|missense_variant	REV__CD276|p.D45N|1|0.33|ENSG00000103855|chr15:73702308-73702308|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2503051757812	2	558.246634	1114.47872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.092	1	47.092	46.592	47.592	0								0	0	0	0.45614	1	18818	18818		24.519	0.31644	1		+		11531	12383	7406	7439	11719	11719					-0.07394443785483418
FSCGHGSPPA	10	Unmodified	_FSCGHGSPPA_					0	0	0			REV__RYR2|p.K1745Nfs*25|1|0.49|ENSG00000198626|chr1:237614358-237614358|A/-|frameshift_variant	REV__RYR2|p.K1745Nfs*25|1|0.49|ENSG00000198626|chr1:237614358-237614358|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.203857421875	2	480.205627	958.396701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.224	1	20.224	19.724	20.724	0								0	0	0	0.38797	1	5376	5376		34.173	4.331	1		+		11532	21483	7407	7440	11720	11720					-0.0841617808225692
FSCLSTSN	8	Unmodified	_FSCLSTSN_					0	0	0			REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A	REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.6850891113281	2	429.686736	857.358918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.586	1	49.586	49.086	50.086	0								0	0	0	1.7419	1	16331	16331		17.365	0.66	1		+		11533	16143	7408	7441	11721	11721					-0.07546689067748957
FSCPESGCVFS	11	Unmodified	_FSCPESGCVFS_					0	0	0		ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant;ZNF142|p.G1052Dfs*20|3|0.38|ENSG00000115568|chr2:218643361-218643361|C/-|frameshift_variant;ZNF142|p.G1126Afs*25|1|0.14|ENSG00000115568|chr2:218643139-218643139|C/-|frameshift_variant;ENSG00000115568|ENST00000411696|ZNF142	ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant	ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.7297973632812	2	581.730817	1161.44708	-0.017802	-1.0356E-05	-0.39073	-0.0002273	-0.40853	-0.00023766	581.7307068165824	12.368	0.39609	12.368	12.175	12.571	0					19	13	2	0	0	0	0.80429	1	2563	2563		14.137	5.4434	1	159570			11534	2922	7409	7442	11722	11722					-0.12718436539421418
FSCSERSSIPG	11	Unmodified	_FSCSERSSIPG_					0	0	0			REV__chr13:43055543-43068930|142|16.39|0.22|6.25|+|2|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15	REV__chr13:43055543-43068930|142|16.39|0.22|6.25|+|2|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.2662963867188	2	585.266413	1168.51827	0.057866	3.3867E-05	-0.11109	-6.5017E-05	-0.053224	-3.115E-05	585.266443988512	17.015	0.17362	17.015	16.929	17.102	0					10	4	3	0	0	0	0.51875	1	4731	4731		42.864	0.46813	1	1264300	+		11535	12467	7410	7443	11723	11723					-0.059246005104114374
FSEERNLI	8	Unmodified	_FSEERNLI_					0	0	0			REV__ENST00000295497.11_1_2:175712216-175712252:-|nuORF	REV__ENST00000295497.11_1_2:175712216-175712252:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2613525390625	2	504.261456	1006.50836	-0.061772	-3.1149E-05	0.030532	1.5396E-05	-0.03124	-1.5753E-05	504.2613499115305	35.326	0.1495	35.326	35.237	35.387	0					10	7	2	0	0	0	0.58686	1	11584	11584		49.442	7.0454	1	50273	+		11536	18172	7411	7444	11724	11724					0.00536579546530902
FSEGGERLL	9	Unmodified	_FSEGGERLL_					0	0	0		ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant;ZFP36L1|p.S294Afs*13|1|0.33|ENSG00000185650|chr14:68789671-68789671|G/-|frameshift_variant;ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant;ZFP36L1|p.G271Vfs*36|1|0.32|ENSG00000185650|chr14:68789738-68789738|C/-|frameshift_variant;ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2616882324219	2	504.261456	1006.50836	1.0316	0.00052022	-0.7344	-0.00037033	0.29725	0.00014989	504.2610624358954	35.596	0.33657	35.596	35.459	35.796	0					25	9	5	0	0	0	0.034688	1	13801	13801		98.582	10.886	1	1280500			11537	7093	7412	7445	11725	11725					0.00536579546530902
FSELVESEPT	10	Unmodified	_FSELVESEPT_					0	0	0			REV__CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant	REV__CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.848876953125	3	379.848521	1136.52373	0.82141	0.00031201	-0.046553	-1.7683E-05	0.77486	0.00029433	379.8485012680982	23.971	0.31805	23.971	23.918	24.236	0					16	7	4	0	0	0	0.70274	1	8021	8021		21.686	21.686	1	597830	+		11538	12450	7413	7446	11726	11726					-0.03906598446951648
FSENERLI	8	Unmodified	_FSENERLI_					0	0	0		ENST00000502732.5_1_1:179076600-179076849:-|nuORF	ENST00000502732.5_1_1:179076600-179076849:-|nuORF	ENST00000502732.5_1_1:179076600-179076849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2616271972656	2	504.261456	1006.50836	-0.056783	-2.8634E-05	0.3198	0.00016126	0.26301	0.00013263	504.26165346964297	35.637	0.18996	35.637	35.521	35.711	0					12	5	3	0	0	0	0.27565	1	13355	13355		79.713	0	1	372260			11539	10159	7414	7447	11727	11727					0.00536579546530902
FSENERLI	8	Unmodified	_FSENERLI_					0	0	0		ENST00000502732.5_1_1:179076600-179076849:-|nuORF	ENST00000502732.5_1_1:179076600-179076849:-|nuORF	ENST00000502732.5_1_1:179076600-179076849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.261962890625	2	504.261456	1006.50836	0.12085	6.0941E-05	1.2199	0.00061514	1.3407	0.00067608	504.2621224362755	35.381	0.14448	35.381	35.302	35.447	0					10	5	2	0	0	0	0.31979	1	12595	12595		79.713	0	1	131940			11540	10159	7414	7447	11728	11728					0.00536579546530902
FSENGAARL	9	Unmodified	_FSENGAARL_					0	0	0			REV__ENSG00000025772|ENST00000372813|TOMM34	REV__ENSG00000025772|ENST00000372813|TOMM34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7452087402344	2	482.745973	963.477394	-0.50637	-0.00024445	-1.0907	-0.00052654	-1.5971	-0.00077099	482.7455613369533	24.803	0.087292	24.803	24.749	24.836	0					5	3	2	0	0	0	0.4966	1	7627	7627		32.812	4.5581	1	63232	+		11541	12956	7415	7448	11729	11729					-0.005805737677064826
FSERTIQLI	9	Unmodified	_FSERTIQLI_					0	0	0			REV__nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	REV__nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.544921875	3	369.544996	1105.61316	-0.2324	-8.5882E-05	0.14399	5.321E-05	-0.088414	-3.2673E-05	369.5450271075426	27.821	0.16619	27.821	27.712	27.878	0					6	3	2	0	0	0	0.5654	1	10012	10012		25.574	0	1	858990	+		11542	13980	7416	7449	11730	11730					0.06457701023100526
FSERVAQLI	9	Unmodified	_FSERVAQLI_					0	0	0			REV__ENST00000560708.5_1_15:89021278-89021398:+|nuORF	REV__ENST00000560708.5_1_15:89021278-89021398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8014526367188	2	531.800749	1061.58694	0.12207	6.4915E-05	0.66645	0.00035442	0.78851	0.00041933	531.8014777773185	40.457	0.35362	40.457	40.348	40.702	0					29	14	3	0	0	0	0.39215	1	15402	15402		42.396	1.618	1	419510	+		11543	20285	7417	7450	11731	11731					0.05861431851622001
FSFMHSYFII	10	Unmodified	_FSFMHSYFII_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|72|1|anti-sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|72|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	646.314453125	2	646.312635	1290.61072	2.8871	0.001866	-0.75935	-0.00049078	2.1278	0.0013752	646.3122294675884	43.862	0.19692	43.862	43.756	43.953	0					13	6	3	0	0	0	0.52707	1	17564	17564		42.396	3.6425	1	136530	+		11544	20816	7418	7451	11732	11732					-0.02296470706232867
FSFSFLIAL	9	Unmodified	_FSFSFLIAL_					0	0	0		nc|ENSG00000221932|Q6WQI6|HEPN1	nc|ENSG00000221932|Q6WQI6|HEPN1	nc|ENSG00000221932|Q6WQI6|HEPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7965698242188	2	522.791861	1043.56917	3.409	0.0017822	3.6434	0.0019048	7.0524	0.0036869	522.793601350814	40.756	0.63353	40.756	40.469	41.103	0					27	12	3	0	0	0	0.41113	1	16111	16111		25.45	0	1	493000			11545	11768	7419	7452	11733	11733					0.04912716596732025
FSFSVPISF	9	Unmodified	_FSFSVPISF_					0	0	0			REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7643432617188	2	515.765843	1029.51713	-1.5344	-0.00079141	-1.7939	-0.00092521	-3.3283	-0.0017166	515.76522391563	37.853	0.31761	37.853	37.729	38.047	0					29	15	3	0	0	0	0.27123	1	13528	13528		54.776	19.158	1	190270	+		11546	19512	7420	7453	11734	11734					0.003555531829761094
FSGARAVT	8	Unmodified	_FSGARAVT_					0	0	0			REV__ENST00000372236.8_1_6:43543965-43544034:+|nuORF	REV__ENST00000372236.8_1_6:43543965-43544034:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.7191467285156	2	404.719227	807.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.882	1	24.882	24.382	25.382	0								0	0	0	1.7419	1	8640	8640		76.774	7.9873	1		+		11547	18665	7421	7454	11735	11735					0.012486735204333854
FSGKSTEL	8	Unmodified	_FSGKSTEL_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7240905761719	2	434.724175	867.433798	-0.44156	-0.00019196	0.44553	0.00019368	0.0039651	1.7237E-06	434.72435457756626	24.369	0.16498	24.369	24.262	24.427	0					8	3	3	0	0	0	0.5535	1	8536	8536		54.776	8.8244	1	159030			11548	6036	7422	7455	11736	11736					-0.005221832648544478
FSGNPIKVSF	10	Unmodified	_FSGNPIKVSF_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.29638671875	2	548.295299	1094.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.681	1	21.681	21.181	22.181	0								0	0	0	0.4201	1	6263	6263		12.812	1.9462	1				11549	1813	7423	7456	11737	11737					0.03254029477329823
FSGQPGPN	8	Unmodified	_FSGQPGPN_					0	0	0		ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant;ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ZAN|p.G2740Efs*38|1|0.09|ENSG00000146839|chr7:100795285-100795285|G/-|frameshift_variant;ZAN|p.E2695Rfs*83|1|0.15|ENSG00000146839|chr7:100794212-100794212|G/-|frameshift_variant;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN	ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant	ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.1880187988281	2	402.18776	802.360967	0.66685	0.0002682	-0.77291	-0.00031085	-0.10605	-4.2654E-05	402.1874266564396	23.332	0.23956	23.332	23.234	23.473	0					11	5	3	0	0	0	0.60719	1	7696	7696		47.916	5.4411	1	653610			11550	4750	7424	7457	11738	11738					-0.04811892267616713
FSGRGTVA	8	Unmodified	_FSGRGTVA_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	397.7114562988281	2	397.711402	793.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.801	1	23.801	23.301	24.301	0								0	0	0	1.7419	1	6939	6939		45.952	0	1				11551	6004	7425	7458	11739	11739					0.003283870033783387
FSGRSGGL	8	Unmodified	_FSGRSGGL_					0	0	0		ENST00000246174.6_2_X:101856417-101857057:+|nuORF	ENST00000246174.6_2_X:101856417-101857057:+|nuORF	ENST00000246174.6_2_X:101856417-101857057:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	390.70343017578125	2	390.703577	779.392602	0.87555	0.00034208	-1.135	-0.00044343	-0.2594	-0.00010135	390.703051137837	22.893	0.21309	22.893	22.805	23.018	0					12	5	3	0	0	0	0.53424	1	7516	7516		56.721	1.2168	1	425020			11552	8229	7426	7459	11740	11740					-0.005918995136653393
FSGRSGGL	8	Unmodified	_FSGRSGGL_					0	0	0		ENST00000246174.6_2_X:101856417-101857057:+|nuORF	ENST00000246174.6_2_X:101856417-101857057:+|nuORF	ENST00000246174.6_2_X:101856417-101857057:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.70355224609375	2	390.703577	779.392602	0.14286	5.5817E-05	-0.18028	-7.0434E-05	-0.037412	-1.4617E-05	390.70345691517105	22.819	0.21679	22.819	22.711	22.927	0					6	4	2	0	0	0	0.3961	1	7791	7791		71.296	5.4925	1	181650			11553	8229	7426	7459	11741	11741					-0.005918995136653393
FSGSARAL	8	Unmodified	_FSGSARAL_					0	0	0			REV__nc|ENSG00000216937|Q96M83-5|CCDC7	REV__nc|ENSG00000216937|Q96M83-5|CCDC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	404.7190246582031	2	404.719227	807.423902	-0.11241	-4.5496E-05	-0.1694	-6.8559E-05	-0.28181	-0.00011406	404.71914944818303	24.776	0.18653	24.776	24.689	24.876	0					9	4	3	0	0	0	0.46905	1	7767	7767		63.306	0	1	446850	+		11554	21215	7427	7460	11742	11742					0.01248673520410648
FSGSGRLG	8	Unmodified	_FSGSGRLG_					0	0	0			REV__ENST00000383811.7_1_3:9975536-9975776:+|nuORF	REV__ENST00000383811.7_1_3:9975536-9975776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	390.70343017578125	2	390.703577	779.392602	-0.6894	-0.00026935	0.48304	0.00018872	-0.20636	-8.0627E-05	390.70372191768223	22.797	0.26796	22.797	22.739	23.007	0					8	5	3	0	0	0	0.46905	1	7649	7649		63.306	2.3343	1	383760	+		11555	18803	7428	7461	11743	11743					-0.00591899513676708
FSGTGARL	8	Unmodified	_FSGTGARL_					0	0	0			REV__ENST00000240055.7_1_12:104529243-104532019:-|nuORF	REV__ENST00000240055.7_1_12:104529243-104532019:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.7192687988281	2	404.719227	807.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.921	1	24.921	24.421	25.421	0								0	0	0	1.7419	1	8780	8780		58.782	2.0609	1		+		11556	17927	7429	7462	11744	11744					0.012486735204333854
FSGTVRGA	8	Unmodified	_FSGTVRGA_					0	0	0		nc|ENSG00000166343|Q4VC12-3|MSS51;nc|ENSG00000166343|Q4VC12-2|MSS51	nc|ENSG00000166343|Q4VC12-3|MSS51	nc|ENSG00000166343|Q4VC12-3|MSS51	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	397.7110595703125	2	397.711402	793.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.823	1	23.823	23.323	24.323	0								0	0	0	1.7419	1	7211	7211		42.396	3.59	1				11557	11625	7430	7463	11745	11745					0.003283870033897074
FSHHYSFAK	9	Unmodified	_FSHHYSFAK_					0	0	0			REV__ENSG00000188868|ENST00000293725|ZNF563	REV__ENSG00000188868|ENST00000293725|ZNF563	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2716674804688	2	562.269616	1122.52468	0.46354	0.00026064	-0.14251	-8.0132E-05	0.32103	0.0001805	562.2692371782891	31.649	0.3337	31.649	31.402	31.735	0					16	8	2	0	0	0	0.25109	1	11554	11554		55.504	14.078	1	206740	+		11558	17197	7431	7464	11746	11746					-0.03168294496708768
FSHLTTNGK	9	Unmodified	_FSHLTTNGK_					0	0	0			REV__MRC1|p.N348H|1|0.4|ENSG00000260314|chr10:17845414-17845414|A/C|missense_variant	REV__MRC1|p.N348H|1|0.4|ENSG00000260314|chr10:17845414-17845414|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.76422119140625	2	502.761623	1003.50869	2.9276	0.0014719	0.99004	0.00049775	3.9176	0.0019696	502.76198745658667	43.697	0.37411	43.697	43.579	43.953	0					22	11	3	0	0	0	0.41113	1	17467	17467		40.778	40.778	1	752120	+		11559	20893	7432	7465	11747	11747					0.007079992663761914
FSHNGMAL	8	Unmodified	_FSHNGMAL_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK;nc|ENSG00000144320|Q9C0E8-3|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.7051696777344	2	438.705263	875.395972	-0.2815	-0.0001235	-0.35585	-0.00015612	-0.63735	-0.00027961	438.70510809598954	30.32	0.19778	30.32	30.251	30.449	0					12	7	3	0	0	0	0.72381	1	9642	9642		30.504	0.6621	1	140930			11560	4608	7433	7466	11748	11748					-0.046709727312986615
FSHNGMAL	8	Unmodified	_FSHNGMAL_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK;nc|ENSG00000144320|Q9C0E8-3|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7052001953125	2	438.705263	875.395972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.621	1	30.621	30.121	31.121	0								0	0	0	1.7419	1	11059	11059		99.375	22.528	1				11561	4608	7433	7466	11749	11749					-0.046709727312986615
FSHQGVQL	8	Unmodified	_FSHQGVQL_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B;ENST00000463026.5_1_7:2404000-2406084:+|nuORF	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2375793457031	2	458.237784	914.461016	0.72227	0.00033097	-1.3532	-0.00062009	-0.63094	-0.00028912	458.2371313369985	29.831	0.44827	29.831	29.7	30.148	0					20	9	4	0	0	0	0.5535	1	11115	11115		54.776	1.4249	1	703050			11562	2427	7434	7467	11750	11750					0.00036345066200738074
FSHQGVQL	8	Unmodified	_FSHQGVQL_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B;ENST00000463026.5_1_7:2404000-2406084:+|nuORF	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2373962402344	2	458.237784	914.461016	2.5072	0.0011489	-2.5007	-0.0011459	0.006483	2.9708E-06	458.23633386580406	29.773	0.3133	29.773	29.617	29.93	0					17	6	4	0	0	0	0.2678	1	10956	10956		93.195	13.256	1	1760400			11563	2427	7434	7467	11751	11751					0.00036345066200738074
FSHSVGTSL	9	Unmodified	_FSHSVGTSL_					0	0	0		nc|ENSG00000261832|Q13286-5|CLN3;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.73468017578125	2	467.735074	933.455596	-0.65003	-0.00030404	0.30821	0.00014416	-0.34182	-0.00015988	467.73524494082943	28.882	0.1715	28.882	28.796	28.968	0					9	4	3	0	0	0	0.1236	1	10265	10265		73.975	18.471	1	186170			11564	7258	7435	7468	11752	11752					-0.013793785162761196
FSHSVGTSL	9	Unmodified	_FSHSVGTSL_					0	0	0		nc|ENSG00000261832|Q13286-5|CLN3;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.73480224609375	2	467.735074	933.455596	-1.1129	-0.00052053	0.57339	0.0002682	-0.53949	-0.00025234	467.7351985076828	28.854	0.1649	28.854	28.795	28.96	0					6	3	2	0	0	0	0.14603	1	10631	10631		68.787	0.30212	1	156320			11565	7258	7435	7468	11753	11753					-0.013793785162761196
FSIAGIDIAI	10	Unmodified	_FSIAGIDIAI_					0	0	0		tr|U7SU34|U7SU34_FUSNUTIGR02206familymembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01004PE=4SV=1	tr|U7SU34|U7SU34_FUSNUTIGR02206familymembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01004PE=4SV=1	tr|U7SU34|U7SU34_FUSNUTIGR02206familymembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01004PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2917175292969	2	510.292225	1018.5699	-0.010725	-5.473E-06	-0.079545	-4.0591E-05	-0.09027	-4.6064E-05	510.2919215427347	36.455	0.18687	36.455	36.408	36.595	0					8	5	2	0	0	0	0.44469	1	13757	13757		51.335	1.8939	1	148780			11566	22807	7436	7469	11754	11754					0.06135511245793168
FSIFVGPKL	9	Unmodified	_FSIFVGPKL_					0	0	0		tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2977294921875	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.143	1	35.143	34.643	35.643	0								0	0	0	0.29356	1	13154	13154		29.15	0	1				11567	22701	7437	7470	11755	11755					0.08212422833662458
FSILYSPTI	9	Unmodified	_FSILYSPTI_					0	0	0			REV__ENST00000316024.9_2_17:7590934-7591339:+|nuORF	REV__ENST00000316024.9_2_17:7590934-7591339:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.784912109375	2	520.786776	1039.559	0.28882	0.00015041	-3.5574	-0.0018526	-3.2686	-0.0017022	520.7849714349841	17.916	0.096188	17.916	17.869	17.965	0					4	2	2	0	0	0	0.098791	1	4599	4599		63.306	7.8021	1	238170	+		11568	18302	7438	7471	11756	11756					0.04080108871517041
FSIRTYTY	8	Unmodified	_FSIRTYTY_					0	0	0		ENST00000460156.1_1_1:155207923-155208412:-|nuORF;ENST00000459805.5_1_1:155186646-155187358:-|nuORF;nc|ENSG00000177628|P04062-3|GBA1;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;ENST00000566701.5_1_1:155184905-155187601:-|nuORF;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1	ENST00000460156.1_1_1:155207923-155208412:-|nuORF	ENST00000460156.1_1_1:155207923-155208412:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7662963867188	2	525.766374	1049.5182	0.52192	0.00027441	-0.1071	-5.6308E-05	0.41483	0.0002181	525.7664294390568	36.5	0.10555	36.5	36.471	36.576	0					11	6	2	0	0	0	0.65148	1	12369	12369		40.778	0	1	47633			11569	6678	7439	7472	11757	11757					-0.004582324480907118
FSISSWIIAA	10	Unmodified	_FSISSWIIAA_					0	0	0		ENSG00000105642|ENST00000684775|KCNN1;nc|ENSG00000105642|Q92952-2|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7999267578125	2	547.797675	1093.5808	1.8041	0.00098826	0.89423	0.00048986	2.6983	0.0014781	547.7982558058762	43.635	0.57218	43.635	43.514	44.086	0					94	29	5	0	0	0	0.57532	1	17143	17143		37.159	8.0096	1	12465000			11570	2379	7440	7473	11758	11758					0.03774913620077314
FSITLGDRF	9	Unmodified	_FSITLGDRF_					0	0	0			REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.281494140625	2	528.279649	1054.54475	3.4665	0.0018313	-0.065272	-3.4482E-05	3.4012	0.0017968	528.279590224395	39.232	0.23468	39.232	39.141	39.376	0					12	5	3	0	0	0	0.17062	1	15502	15502		67.494	28.241	1	394830	+		11571	14400	7441	7474	11759	11759					0.0196545644323578
FSKAVLGL	8	Unmodified	_FSKAVLGL_					0	0	0		tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.75799560546875	2	417.757821	833.501089	1.055	0.00044073	-1.3533	-0.00056536	-0.29835	-0.00012464	417.7573846030491	40.18	0.21578	40.18	40.092	40.308	0					7	5	2	0	0	0	0.54629	1	15929	15929		55.504	3.205	1	89847			11572	22739	7442	7475	11760	11760					0.07767891736750698
FSKGNIPNTI	10	Unmodified	_FSKGNIPNTI_					0	0	0			REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.2014465332031	3	364.201229	1089.58186	-0.10556	-3.8444E-05	0.29347	0.00010688	0.18791	6.8438E-05	364.2013069353583	16.103	0.21993	16.103	15.997	16.217	0					8	4	3	0	0	0	0.47859	1	4379	4379		59.931	13.959	1	288310	+		11573	17311	7443	7476	11761	11761					0.04065127988997119
FSKIDLSASQ	10	Unmodified	_FSKIDLSASQ_					0	0	0			REV__nc|ENSG00000129657|Q92503-3|SEC14L1	REV__nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2943725585938	2	548.287671	1094.56079	1.7842	0.00097824	0.41561	0.00022788	2.1998	0.0012061	548.2879033210614	33.762	0.78399	33.762	33.561	34.345	0					43	19	3	0	0	0	0.27065	1	13079	13079		70.816	1.1886	1	9332800	+		11574	14555	7444	7477	11762	11762					0.017291178894765835
FSKIGGIL	8	Unmodified	_FSKIGGIL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.7579650878906	2	417.757821	833.501089	1.0595	0.00044263	-0.71231	-0.00029757	0.34723	0.00014506	417.7574929902969	40.294	0.2061	40.294	40.158	40.364	0					21	9	3	0	0	0	0.66095	1	15330	15330		39.253	2.0937	1	215970			11575	4398;6989;4684;14744	7445	7478	11763	11763					0.07767891736773436
FSKIGGIL	8	Unmodified	_FSKIGGIL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.75787353515625	2	417.757821	833.501089	0.069127	2.8879E-05	0.53931	0.0002253	0.60844	0.00025418	417.75801417485286	40.24	0.29056	40.24	40.118	40.409	0					15	11	2	0	0	0	0.24806	1	15837	15837		104.75	27.972	1	160250			11576	4398;6989;4684;14744	7445	7478	11764	11764					0.07767891736773436
FSKIGGIL	8	Unmodified	_FSKIGGIL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.7580261230469	2	417.757821	833.501089	-0.30002	-0.00012533	0.62477	0.000261	0.32475	0.00013567	417.7580441294967	40.155	0.36106	40.155	40.063	40.424	0					16	8	3	0	0	0	0.24425	1	15912	15912		111.65	29.343	1	383560			11577	4398;6989;4684;14744	7445	7478	11765	11765					0.07767891736773436
FSKKHWGP	8	Unmodified	_FSKKHWGP_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-5|PATJ	REV__nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7633361816406	2	493.763969	985.513385	-0.47667	-0.00023536	-1.0083	-0.00049784	-1.4849	-0.0007332	493.7635249107659	15.871	0.58911	15.871	15.56	16.149	0					24	14	3	0	0	0	0.76283	1	4210	4210		25.45	1.2474	1	269480	+		11578	21022	7446	7479	11766	11766					0.020049281997899016
FSKMPFDV	8	Unmodified	_FSKMPFDV_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;ENST00000578955.1_1_18:19057140-19088617:+|nuORF	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7401428222656	2	485.738771	969.462989	2.4982	0.0012135	0.017508	8.5041E-06	2.5157	0.001222	485.7387952131977	43.834	0.14429	43.834	43.727	43.871	0					7	4	2	0	0	0	0.63077	1	17533	17533		44.117	44.117	1	113640			11579	4446	7447	7480	11767	11767					-0.022963622402244255
FSKSCHLPW	9	Unmodified	_FSKSCHLPW_					0	0	0		ENSG00000174697|ENST00000308868|LEP	ENSG00000174697|ENST00000308868|LEP	ENSG00000174697|ENST00000308868|LEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8482666015625	3	368.848022	1103.52224	0.47013	0.00017341	-0.74278	-0.00027397	-0.27265	-0.00010057	368.8477830401402	40.937	1.4597	40.937	40.325	41.784	0					79	62	2	0	0	0	0.5654	1	15622	15622		25.574	2.5316	1	103470			11580	6506	7448	7481	11768	11768					-0.025384662260421464
FSKSCHLPW	9	Unmodified	_FSKSCHLPW_					0	0	0		ENSG00000174697|ENST00000308868|LEP	ENSG00000174697|ENST00000308868|LEP	ENSG00000174697|ENST00000308868|LEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8480224609375	3	368.848022	1103.52224	0.47616	0.00017563	-0.33113	-0.00012214	0.14503	5.3495E-05	368.8478896929125	42.028	0.87466	42.028	41.646	42.52	0					61	40	2	0	0	0	0.5879	1	16556	16556		23.523	10.069	1	147510			11581	6506	7448	7481	11769	11769					-0.025384662260421464
FSKVKSLP	8	Unmodified	_FSKVKSLP_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16;nc|ENSG00000130762|Q5VV41-2|ARHGEF16;ENST00000485984.1_1_1:3389348-3394597:+|nuORF	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2759094238281	2	453.276378	904.538203	-0.41557	-0.00018837	-0.31339	-0.00014205	-0.72896	-0.00033042	453.2759738226093	36.056	0.11897	36.056	35.979	36.098	0					4	2	2	0	0	0	0.43813	1	13982	13982		66.429	0.6261	1	63191			11582	3670	7449	7482	11770	11770					0.08211563282520729
FSLGLSVLNQ	10	Unmodified	_FSLGLSVLNQ_					0	0	0			REV__ZNF667|p.R48Q|1|0.5|ENSG00000198046|chr19:56460706-56460706|C/T|missense_variant	REV__ZNF667|p.R48Q|1|0.5|ENSG00000198046|chr19:56460706-56460706|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3021850585938	2	539.300581	1076.58661	1.9438	0.0010483	-0.64826	-0.00034961	1.2956	0.0006987	539.3006758797998	40.733	0.34101	40.733	40.617	40.958	0					18	9	3	0	0	0	0.4287	1	16049	16049		53.089	1.8963	1	156200	+		11583	22333	7450	7483	11771	11771					0.05138012131760661
FSLKFLKI	8	Unmodified	_FSLKFLKI_					0	0	0			REV__ENSG00000150261|ENST00000279783|OR8K1	REV__ENSG00000150261|ENST00000279783|OR8K1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.31634521484375	2	498.318046	994.621539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.907	1	30.907	30.407	31.407	0								0	0	0	1.7419	1	9890	9890		37.159	5.2042	1		+		11584	15440	7451	7484	11772	11772					0.12401299730356641
FSLNAPSDRI	10	Unmodified	_FSLNAPSDRI_					0	0	0			REV__CD300A|p.T141Dfs*32|1|0.04|ENSG00000167851|chr17:74474569-74474570|-/A|frameshift_variant	REV__CD300A|p.T141Dfs*32|1|0.04|ENSG00000167851|chr17:74474569-74474570|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.29638671875	2	560.293288	1118.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.8	1	44.8	44.3	45.3	0								0	0	0	0.38475	1	17947	17947		35.152	0.97948	1		+		11585	12384	7452	7485	11773	11773					0.017479399836020093
FSLNIAELYN	10	Unmodified	_FSLNIAELYN_					0	0	0			REV__DEPDC5|p.C416*|1|0.04|ENSG00000100150|chr22:31806152-31806152|T/-|frameshift_variant	REV__DEPDC5|p.C416*|1|0.04|ENSG00000100150|chr22:31806152-31806152|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.3038330078125	2	592.303321	1182.59209	-0.049483	-2.9309E-05	0.63097	0.00037373	0.58149	0.00034442	592.3036543020371	40.986	0.16965	40.986	40.938	41.108	0					9	6	2	0	0	0	0.59277	1	16117	16117		35.152	2.3396	1	76897	+		11586	12699	7453	7486	11774	11774					0.008096909235973726
FSLPEMALL	9	Unmodified	_FSLPEMALL_					0	0	0		nc|ENSG00000168268|Q9H857-4|NT5DC2;nc|ENSG00000168268|Q9H857|NT5DC2;nc|ENSG00000168268|Q9H857-3|NT5DC2;ENSG00000168268|ENST00000422318|NT5DC2	nc|ENSG00000168268|Q9H857-4|NT5DC2	nc|ENSG00000168268|Q9H857-4|NT5DC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7795104980469	2	510.775354	1019.53615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.005	1	45.005	44.505	45.505	0								0	0	0	0.022698	1	18031	18031		99.375	27.997	1				11587	6076	7454	7487	11775	11775					0.0271676648239918
FSLQEFFY	8	Unmodified	_FSLQEFFY_					0	0	0		ENST00000495263.2_2_11:67380310-67380676:-|nuORF	ENST00000495263.2_2_11:67380310-67380676:-|nuORF	ENST00000495263.2_2_11:67380310-67380676:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.754150390625	2	540.755475	1079.4964	-1.482	-0.00080138	-1.1157	-0.00060333	-2.5977	-0.0014047	540.7548190165835	35.078	0.23932	35.078	34.977	35.216	0					20	7	4	0	0	0	0.32597	1	12460	12460		79.713	5.7379	1	350320			11588	10106	7455	7488	11776	11776					-0.04017037196649653
FSLSNARMGV	10	Unmodified	_FSLSNARMGV_					0	0	0		nc|ENSG00000211951|A0A0B4J1V2|IGHV2-26	nc|ENSG00000211951|A0A0B4J1V2|IGHV2-26	nc|ENSG00000211951|A0A0B4J1V2|IGHV2-26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2769775390625	2	541.276583	1080.53861	2.0124	0.0010893	-0.78875	-0.00042693	1.2237	0.00066234	541.2760443000307	32.643	1.0015	32.643	32.447	33.448	0					48	24	3	0	0	0	0.24256	1	12416	12416		74.255	5.4682	1	1669800			11589	11753	7456	7489	11777	11777					0.0015661494005598797
FSLSQWASVL	10	Unmodified	_FSLSQWASVL_					0	0	0		ENST00000543406.1_1_11:60708255-60708741:-|nuORF	ENST00000543406.1_1_11:60708255-60708741:-|nuORF	ENST00000543406.1_1_11:60708255-60708741:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.8020629882812	2	569.300581	1136.58661	1.6348	0.00093069	-1.3896	-0.0007911	0.2452	0.00013959	569.2999279367091	39.917	0.23503	39.917	39.782	40.017	0					9	5	2	0	0	0	0.63224	1	15804	15804		30.318	2.4355	1	153740			11590	10559	7457	7490	11778	11778					0.02378012131748619
FSLWITTVI	9	Unmodified	_FSLWITTVI_					0	0	0		ENST00000347869.7_1_3:50142512-50142999:+|nuORF	ENST00000347869.7_1_3:50142512-50142999:+|nuORF	ENST00000347869.7_1_3:50142512-50142999:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.3084106445312	2	540.310418	1078.60628	3.4938	0.0018877	-3.9571	-0.0021381	-0.46334	-0.00025035	540.3064663371126	37.442	0.40882	37.442	37.187	37.596	0					19	8	4	0	0	0	0.26904	1	14652	14652		53.351	1.8237	1	533230			11591	8766	7458	7491	11779	11779					0.07012388142493364
FSMAFRGA	8	Unmodified	_FSMAFRGA_					0	0	0		ENST00000569795.5_1_15:72558271-72559838:-|nuORF	ENST00000569795.5_1_15:72558271-72559838:-|nuORF	ENST00000569795.5_1_15:72558271-72559838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7154846191406	2	443.71563	885.416708	-0.36204	-0.00016064	-0.52553	-0.00023319	-0.88757	-0.00039383	443.7156004511539	26.9	0.75536	26.9	26.745	27.501	0					40	18	3	0	0	0	0.64096	1	9318	9318		42.474	3.453	1	1286300			11592	10785	7459	7492	11780	11780					-0.03058382351639466
FSNGHIKVL	9	Unmodified	_FSNGHIKVL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.86260986328125	3	338.862548	1013.56581	0.51302	0.00017384	-0.76636	-0.00025969	-0.25333	-8.5846E-05	338.86232668166485	28.882	0.32956	28.882	28.758	29.087	0					15	8	2	0	0	0	0.51817	1	10246	10246		54.776	6.8607	1	443270			11593	2727	7460	7493	11781	11781					0.05957466542770362
FSNGLVTVM	9	Unmodified	_FSNGLVTVM_					0	0	0		ENST00000569549.5_1_16:74943656-74957850:-|nuORF;WDR59|p.Q401Cfs*32|1|0.19|ENSG00000103091|chr16:74915893-74915894|-/CA|frameshift_variant;WDR59|p.L516Yfs*7|1|0.37|ENSG00000103091|chr16:74909598-74909598|G/-|frameshift_variant;nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59	ENST00000569549.5_1_16:74943656-74957850:-|nuORF	ENST00000569549.5_1_16:74943656-74957850:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2496643066406	2	484.249503	966.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.829	1	42.829	42.329	43.329	0								0	0	0	0.27939	1	16797	16797		39.253	0	1				11594	2213	7461	7494	11782	11782					-0.0001297721150876896
FSNGRDLLI	9	Unmodified	_FSNGRDLLI_					0	0	0		ENSG00000081479|ENST00000649046|LRP2;LRP2|p.E535Gfs*3|1|0.12|ENSG00000081479|chr2:169277913-169277914|-/C|frameshift_variant;LRP2|p.S714Hfs*51|1|0.34|ENSG00000081479|chr2:169271084-169271084|A/-|frameshift_variant	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7853393554688	2	517.785099	1033.55564	1.5439	0.00079938	-2.4772	-0.0012827	-0.93339	-0.0004833	517.7837578475784	29.468	0.47768	29.468	29.239	29.717	0					20	10	3	0	0	0	0.16806	1	10928	10928		49.442	0	1	680330			11595	1660	7462	7495	11783	11783					0.04020858817534645
FSNLTTHKR	9	Unmodified	_FSNLTTHKR_					0	0	0		nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43;ZNF43|p.I363T|1|0.18|ENSG00000198521|chr19:21808949-21808949|A/G|missense_variant;nc|ENSG00000196172|Q96N22-2|ZNF681;ENSG00000196172|ENST00000402377|ZNF681	nc|ENSG00000198521|P17038-2|ZNF43	nc|ENSG00000198521|P17038-2|ZNF43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3026733398438	2	552.301447	1102.58834	1.6019	0.00088472	1.2297	0.00067914	2.8315	0.0015639	552.3022321781162	37.85	0.3615	37.85	37.72	38.081	0					30	12	3	0	0	0	0.25716	1	14821	14821		54.776	54.776	1	654280			11596	7572	7463	7496	11784	11784					0.04115065940391105
FSNSHNAL	8	Unmodified	_FSNSHNAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.21142578125	2	445.211766	888.40898	-0.38901	-0.00017319	-0.35013	-0.00015588	-0.73914	-0.00032907	445.2116066916658	22.291	0.18775	22.291	22.197	22.384	0					7	4	3	0	0	0	0.39125	1	7227	7227		71.877	18.526	1	415180			11597	5864	7464	7497	11785	11785					-0.03968818347584602
FSNTTLMIS	9	Oxidation (M)	_FSNTTLM(Oxidation (M))IS_		FSNTTLM(1)IS		FSNTTLM(53)IS	0	0	1		ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000470045.1_1_10:22605346-22607030:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.250732421875	2	515.2497	1028.48485	-1.564	-0.00080584	2.3303	0.0012007	0.7663	0.00039484	515.2510221462591	31.807	0.26401	31.807	31.694	31.958	0					13	8	2	0	0	0	0.27249	1	10990	10990		52.937	6.4799	1	58272			11598	9835	7465	7498	11786	11786		396			-0.028256022823143212
FSPCFAGCTY	10	Unmodified	_FSPCFAGCTY_					0	0	0		nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1;nc|ENSG00000205359|Q86UG4-3|SLCO6A1	nc|ENSG00000205359|Q86UG4-2|SLCO6A1	nc|ENSG00000205359|Q86UG4-2|SLCO6A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2189331054688	2	548.217346	1094.42014	3.818	0.0020931	-0.92337	-0.00050621	2.8946	0.0015869	548.2169472674534	31.909	0.36761	31.909	31.786	32.153	0					20	7	4	0	0	0	0.51121	1	12007	12007		44.117	4.864	1	1071100			11599	7748	7466	7499	11787	11787					-0.12329500359942358
FSPDLLGLQ	9	Unmodified	_FSPDLLGLQ_					0	0	0		ENST00000589644.1_1_19:38798235-38799514:-|nuORF;ENST00000586319.5_1_19:38798235-38799736:-|nuORF;ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	ENST00000589644.1_1_19:38798235-38799514:-|nuORF	ENST00000589644.1_1_19:38798235-38799514:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2692565917969	2	495.26875	988.522947	0.74261	0.00036779	1.1619	0.00057545	1.9045	0.00094325	495.2689211848286	17.78	0.1317	17.78	17.735	17.866	0					6	3	2	0	0	0	0.2873	1	5093	5093		51.335	1.8939	1	225820			11600	6012	7467	7500	11788	11788					0.028226516946688207
FSPFHASVL	9	Unmodified	_FSPFHASVL_					0	0	0		ENSG00000112357|ENST00000318471|PEX7	ENSG00000112357|ENST00000318471|PEX7	ENSG00000112357|ENST00000318471|PEX7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.763427734375	2	502.763635	1003.51272	-0.069071	-3.4726E-05	0.068476	3.4427E-05	-0.00059552	-2.9941E-07	502.76366922636123	43.762	0.21387	43.762	43.692	43.905	0					18	11	2	0	0	0	0.28897	1	16469	16469		53.351	5.4358	1	95242			11601	2739	7468	7501	11789	11789					0.01110088760083272
FSPFHASVL	9	Unmodified	_FSPFHASVL_					0	0	0		ENSG00000112357|ENST00000318471|PEX7	ENSG00000112357|ENST00000318471|PEX7	ENSG00000112357|ENST00000318471|PEX7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7640380859375	2	502.763635	1003.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.69	1	43.69	43.19	44.19	0								0	0	0	0.20989	1	17492	17492		42.396	0	1				11602	2739	7468	7501	11790	11790					0.01110088760083272
FSPINTTQF	9	Unmodified	_FSPINTTQF_					0	0	0		RTTN|p.F276Sfs*69|2|0.11|ENSG00000176225|chr18:70196515-70196515|A/-|frameshift_variant	RTTN|p.F276Sfs*69|2|0.11|ENSG00000176225|chr18:70196515-70196515|A/-|frameshift_variant	RTTN|p.F276Sfs*69|2|0.11|ENSG00000176225|chr18:70196515-70196515|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7639770507812	2	527.763832	1053.51311	0.10628	5.6093E-05	0.11888	6.2741E-05	0.22517	0.00011883	527.7637868874339	33.996	0.90295	33.996	33.869	34.772	0					64	23	5	0	0	0	0.1236	1	12766	12766		73.975	2.679	1	17703000			11603	22365	7469	7502	11791	11791					-0.011505363107289668
FSPLPFVAL	9	Unmodified	_FSPLPFVAL_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7862548828125	2	495.786579	989.558604	-0.037158	-1.8423E-05	-0.99335	-0.00049249	-1.0305	-0.00051091	495.7862368039785	30.114	0.24047	30.114	30.008	30.249	0					12	5	3	0	0	0	0.35045	1	11212	11212		45.952	3.0877	1	166360			11604	10810	7470	7503	11792	11792					0.0634073394232928
FSPPSVGHTC	10	Unmodified	_FSPPSVGHTC_					0	0	0		ENST00000406386.7_1_22:38169800-38170091:+|nuORF	ENST00000406386.7_1_22:38169800-38170091:+|nuORF	ENST00000406386.7_1_22:38169800-38170091:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2335815429688	2	516.234384	1030.45422	-1.5115	-0.00078026	-0.025717	-1.3276E-05	-1.5372	-0.00079354	516.234341004017	16.552	0.13202	16.552	16.463	16.595	0					9	3	3	0	0	0	0.65213	1	3936	3936		27.882	3.6795	1	526230			11605	9283	7471	7504	11793	11793					-0.05979335876691039
FSQGGLKQGL	10	Unmodified	_FSQGGLKQGL_					0	0	0			REV__ENSG00000174206|ENST00000398055|KICS2	REV__ENSG00000174206|ENST00000398055|KICS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7855834960938	2	517.785099	1033.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.516	1	43.516	43.016	44.016	0								0	0	0	0.33147	1	17414	17414		49.536	11.725	1		+		11606	16553	7472	7505	11794	11794					0.04020858817534645
FSQISTIR	8	Unmodified	_FSQISTIR_					0	0	0		ENST00000431090.1_1_22:19435446-19435635:+|nuORF	ENST00000431090.1_1_22:19435446-19435635:+|nuORF	ENST00000431090.1_1_22:19435446-19435635:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2666320800781	2	476.266542	950.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.934	1	20.934	20.434	21.434	0								0	0	0	1.7419	1	6862	6862		37.812	2.1932	1				11607	9498	7473	7506	11795	11795					0.04129187271769297
FSQQEVQF	8	Unmodified	_FSQQEVQF_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.74114990234375	2	506.740357	1011.46616	3.7717	0.0019112	-3.1202	-0.0015811	0.6515	0.00033014	506.73866786353005	36.463	0.18316	36.463	36.401	36.584	0					14	10	2	0	0	0	0.32815	1	12357	12357		79.451	2.1334	1	51127			11608	3069	7474	7507	11796	11796					-0.03911395861860001
FSREADAR	8	Unmodified	_FSREADAR_					0	0	0		ENST00000544158.2_1_19:36259282-36259444:+|nuORF	ENST00000544158.2_1_19:36259282-36259444:+|nuORF	ENST00000544158.2_1_19:36259282-36259444:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.237548828125	2	476.235773	950.456993	3.5488	0.0016901	0.75439	0.00035927	4.3032	0.0020494	476.2362941628395	36.727	0.24918	36.727	36.615	36.864	0					23	13	3	0	0	0	0.5676	1	12431	12431		53.351	7.3995	1	92154			11609	10563	7475	7508	11797	11797					-0.020217444275317575
FSRRFIDL	8	Unmodified	_FSRRFIDL_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.29541015625	2	527.295633	1052.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.583	1	34.583	34.083	35.083	0								0	0	0	1.7419	1	11671	11671		55.504	6.2934	1		+		11610	16111	7476	7509	11798	11798					0.052528689170458165
FSRSAKRR	8	Unmodified	_FSRSAKRR_					0	0	0		VSTM4|p.A108Rfs*8|1|0.32|ENSG00000165633|chr10:49107729-49107729|C/-|frameshift_variant;nc|ENSG00000165633|Q8IW00-2|VSTM4;ENSG00000165633|ENST00000332853|VSTM4	VSTM4|p.A108Rfs*8|1|0.32|ENSG00000165633|chr10:49107729-49107729|C/-|frameshift_variant	VSTM4|p.A108Rfs*8|1|0.32|ENSG00000165633|chr10:49107729-49107729|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5342712402344	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.907	1	35.907	35.407	36.407	0								0	0	0	1.7419	1	13502	13502		23.042	0	1				11611	5815	7477	7510	11799	11799					0.0754192272564751
FSRSNSFVY	9	Unmodified	_FSRSNSFVY_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.767822265625	2	553.766906	1105.51926	1.7579	0.00097349	0.031449	1.7415E-05	1.7894	0.0009909	553.7669121845895	35.968	0.39956	35.968	35.842	36.242	0					32	14	3	0	0	0	0.14734	1	12830	12830		68.485	7.5128	1	271120		+	11612	620	7478	7511	11800	11800					-0.029280180792056854
FSRSRARK	8	Unmodified	_FSRSRARK_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-6|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-6|ARHGAP19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.79559326171875	2	504.296499	1006.57845	2.9308	0.001478	-1.1232	-0.00056643	1.8076	0.00091158	504.29646992141363	27.935	1.9649	27.935	27.476	29.441	0					69	39	2	0	0	0	0.61938	1	10166	10166		45.952	3.5558	1	8241200	+		11613	17561	7479	7512	11801	11801					0.0754192272564751
FSSACPQPRGA	11	Unmodified	_FSSACPQPRGA_					0	0	0			REV__ENST00000565652.1_1_15:75660495-75660924:-|nuORF	REV__ENST00000565652.1_1_15:75660495-75660924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7659301757812	2	560.76384	1119.51313	3.4702	0.0019459	0.0051787	2.904E-06	3.4753	0.0019488	560.7640043844199	27.027	3.2082	27.027	26.722	29.93	0					151	64	5	0	0	0	0.37057	1	9536	9536		54.722	5.2808	1	24674000	+		11614	20340	7480	7513	11802	11802					-0.041848595823466894
FSSALWPFS	9	Unmodified	_FSSALWPFS_					0	0	0		tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2562866210938	2	521.255643	1040.49673	0.75504	0.00039357	-1.2735	-0.0006638	-0.51843	-0.00027024	521.2551937659588	33.894	0.62986	33.894	33.772	34.402	0					57	27	3	0	0	0	0.22377	1	11033	11033		58.782	7.5893	1	540030			11615	22915	7481	7514	11803	11803					-0.021896174768244236
FSSATYRAL	9	Unmodified	_FSSATYRAL_					0	0	0			REV__nc|ENSG00000164828|O94901-3|SUN1	REV__nc|ENSG00000164828|O94901-3|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.26348876953125	2	508.263999	1014.51345	-0.58327	-0.00029646	0.86611	0.00044021	0.28283	0.00014375	508.2642441999023	40.954	0.17294	40.954	40.814	40.987	0					7	4	2	0	0	0	0.38666	1	13648	13648		35.618	0	1	45900	+		11616	18447	7482	7515	11804	11804					0.006768834091303688
FSSDVTHEM	9	Unmodified	_FSSDVTHEM_					0	0	0		ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7216186523438	2	526.721307	1051.42806	1.3151	0.00069271	-1.2888	-0.00067886	0.026283	1.3844E-05	526.7205981165562	31.02	0.11107	31.02	30.966	31.077	0					6	4	2	0	0	0	0.30951	1	9943	9943		49.442	6.9671	1	58928			11617	3497	7483	7516	11805	11805					-0.09559649838820405
FSSESAKL	8	Unmodified	_FSSESAKL_					0	0	0			REV__ENST00000470160.1_1_2:86716620-86719239:+|nuORF	REV__ENST00000470160.1_1_2:86716620-86719239:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.7239685058594	2	434.724175	867.433798	-0.52036	-0.00022621	0.41641	0.00018103	-0.10394	-4.5187E-05	434.72428529668184	24.338	0.1186	24.338	24.278	24.397	0					6	2	3	0	0	0	0.5676	1	8396	8396		53.351	2.016	1	246940	+		11618	14115	7484	7517	11806	11806					-0.005221832648544478
FSSFGAYM	8	Unmodified	_FSSFGAYM_					0	0	0			REV__ENSG00000171522|ENST00000302472|PTGER4	REV__ENSG00000171522|ENST00000302472|PTGER4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.19427490234375	2	455.194196	908.37384	0.01716	7.8111E-06	-1.0741	-0.00048891	-1.0569	-0.0004811	455.19375310066596	26.594	0.19796	26.594	26.531	26.729	0					10	6	2	0	0	0	0.79176	1	8097	8097		21.702	0.7554	1	96701	+		11619	16417	7485	7518	11807	11807					-0.08401197199736998
FSSPLSLSVD	10	Unmodified	_FSSPLSLSVD_					0	0	0			REV__ENST00000509734.5_2_5:68665744-68666026:+|nuORF	REV__ENST00000509734.5_2_5:68665744-68666026:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2704467773438	2	526.268947	1050.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.953	1	11.953	11.453	12.453	0								0	0	0	0.4201	1	2574	2574		10.866	0.6003	1		+		11620	19862	7486	7519	11808	11808					0.00010026623863268469
FSSQVSKP	8	Unmodified	_FSSQVSKP_					0	0	0		B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant;ENSG00000182272|ENST00000329962|B4GALNT4	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.23370361328125	2	440.232168	878.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.871	1	21.871	21.371	22.371	0								0	0	0	1.7419	1	6093	6093		39.253	14.734	1				11621	270	7487	7520	11809	11809					0.005695229720458883
FSSRLQPLS	9	Unmodified	_FSSRLQPLS_					0	0	0			REV__ENST00000558911.1_1_15:99893907-99894012:+|nuORF	REV__ENST00000558911.1_1_15:99893907-99894012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.785400390625	2	517.785099	1033.55564	3.3337	0.0017262	-3.859	-0.0019981	-0.52522	-0.00027195	517.783025542286	29.383	0.45702	29.383	29.126	29.583	0					19	9	3	0	0	0	0.18505	1	10769	10769		47.96	3.8427	1	872320	+		11622	20274	7488	7521	11810	11810					0.04020858817534645
FSSSVNSKF	9	Unmodified	_FSSSVNSKF_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B;ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7475891113281	2	501.748182	1001.48181	1.1292	0.00056657	-3.4808	-0.0017465	-2.3516	-0.0011799	501.74670658245776	38.162	0.42136	38.162	38.072	38.493	0					12	9	2	0	0	0	0.20551	1	14997	14997		60.972	8.6728	1	95745			11623	6704	7489	7522	11811	11811					-0.018871093448069587
FSSVCVSSLM	10	Oxidation (M)	_FSSVCVSSLM(Oxidation (M))_		FSSVCVSSLM(1)		FSSVCVSSLM(66)	0	0	1			REV__KCNC3|p.V354Cfs*74|1|0.26|ENSG00000131398|chr19:50323893-50323893|C/-|frameshift_variant	REV__KCNC3|p.V354Cfs*74|1|0.26|ENSG00000131398|chr19:50323893-50323893|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2472534179688	2	538.24356	1074.47257	1.908	0.001027	2.49	0.0013402	4.3981	0.0023672	538.244678740162	31.918	0.72014	31.918	31.471	32.191	0					27	15	3	0	0	0	0.30737	1	12088	12088		66.429	13.078	1	464170	+		11624	14622	7490	7523	11812	11812		555			-0.061689620170000126
FSTAQVLAAEL	11	Unmodified	_FSTAQVLAAEL_					0	0	0			REV__nc|ENSG00000160401|Q5JU67-2|CFAP157	REV__nc|ENSG00000160401|Q5JU67-2|CFAP157	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.3114013671875	2	575.311146	1148.60774	-1.5384	-0.00088504	2.8197	0.0016222	1.2814	0.00073718	575.312595741213	30.011	0.18698	30.011	29.919	30.106	0					6	4	2	0	0	0	0.42746	1	10156	10156		49.536	0.93449	1	64152	+		11625	15752	7491	7524	11813	11813					0.03937977440614304
FSTCGSHLAL	10	Unmodified	_FSTCGSHLAL_					0	0	0		nc|ENSG00000220721|Q8NHA8|OR1F12P	nc|ENSG00000220721|Q8NHA8|OR1F12P	nc|ENSG00000220721|Q8NHA8|OR1F12P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2484741210938	2	518.250034	1034.48552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.139	1	29.139	28.639	29.639	0								0	0	0	0.16252	1	9166	9166		68.787	13.283	1				11626	11766	7492	7525	11814	11814					-0.030347628425943185
FSTQKVKGI	9	Unmodified	_FSTQKVKGI_					0	0	0			REV__ENST00000508179.1_1_5:9549691-9549847:+|nuORF	REV__ENST00000508179.1_1_5:9549691-9549847:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5346374511719	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.535	1	52.535	52.035	53.035	0								0	0	0	0.39567	1	19349	19349		8.6937	1.9582	1		+		11627	19850	7493	7526	11815	11815					0.07810333339955378
FSTRPARM	8	Unmodified	_FSTRPARM_					0	0	0			REV__ENST00000424085.6_1_1:31405329-31405398:-|nuORF	REV__ENST00000424085.6_1_1:31405329-31405398:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2525634765625	2	483.252911	964.49127	-0.15309	-7.398E-05	0.26483	0.00012798	0.11175	5.4002E-05	483.25301549708087	29.928	0.28765	29.928	29.839	30.127	0					18	7	4	0	0	0	0.59773	1	10743	10743		49.442	2.9848	1	382740	+		11628	19104	7494	7527	11816	11816					0.007603804597238195
FSTVAADVAI	10	Unmodified	_FSTVAADVAI_					0	0	0			REV__ENST00000426297.1_3_2:241545901-241546006:+|nuORF	REV__ENST00000426297.1_3_2:241545901-241546006:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2672424316406	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.064	1	43.064	42.564	43.564	0								0	0	0	0.40862	1	16276	16276		27.882	1.1893	1		+		11629	19112	7495	7528	11817	11817					0.021303478320305658
FSVAETLHSM	10	Unmodified	_FSVAETLHSM_					0	0	0		ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2675170898438	2	561.268424	1120.5223	3.4698	0.0019475	-3.6674	-0.0020584	-0.19754	-0.00011087	561.2662367658421	38.395	1.4456	38.395	37.332	38.778	0					47	30	3	0	0	0	0.60076	1	14989	14989		34.173	1.3601	1	462990			11630	3154	7496	7529	11818	11818					-0.03314511016696997
FSVDLGSLRL	10	Unmodified	_FSVDLGSLRL_					0	0	0			REV__ENSG00000171823|ENST00000339235|FBXL14	REV__ENSG00000171823|ENST00000339235|FBXL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8141479492188	2	553.813856	1105.61316	0.18456	0.00010221	0.77396	0.00042863	0.95852	0.00053084	553.8140795932328	27.646	0.1285	27.646	27.585	27.713	0					7	4	2	0	0	0	0.44601	1	8842	8842		51.193	0	1	107050	+		11631	16435	7497	7530	11819	11819					0.06457701023077789
FSVFSAGFSM	10	Unmodified	_FSVFSAGFSM_					0	0	0			REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7474975585938	2	540.24696	1078.47937	-1.4803	-0.00079972	-1.1969	-0.00064661	-2.6771	-0.0014463	540.2463597377829	36.591	0.21353	36.591	36.511	36.724	0					19	10	3	0	0	0	0.66185	1	13092	13092		26.693	0	1	87541	+		11632	16247	7498	7531	11820	11820					-0.05673281074132319
FSVHKQPQL	9	Unmodified	_FSVHKQPQL_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2994384765625	2	542.300916	1082.58728	-1.4865	-0.0008061	-1.2553	-0.00068075	-2.7417	-0.0014869	542.3000889722969	17.899	0.15187	17.899	17.85	18.002	0					5	3	2	0	0	0	0.21419	1	4574	4574		62.107	21.329	1	137930	+		11633	14775	7499	7532	11821	11821					0.04928851571457926
FSVINSNVII	10	Unmodified	_FSVINSNVII_					0	0	0		ENST00000438101.1_1_X:49432665-49432995:-|nuORF;SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant;SALL1|p.T412Nfs*26|1|0.26|ENSG00000103449|chr16:51140987-51140988|-/T|frameshift_variant;SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1	ENST00000438101.1_1_X:49432665-49432995:-|nuORF	ENST00000438101.1_1_X:49432665-49432995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.31640625	2	553.316232	1104.61791	3.6378	0.0020129	-2.4403	-0.0013503	1.1975	0.0006626	553.8164760540043	47.465	0.1278	47.465	47.388	47.516	0					12	7	2	0	0	0	0.36432	1	18940	18940		40.058	0	1	57093			11634	2240	7500	7533	11822	11822					0.06978585165848017
FSVLIYSLY	9	Unmodified	_FSVLIYSLY_					0	0	0		ENST00000307602.8_1_8:42881248-42881428:+|nuORF	ENST00000307602.8_1_8:42881248-42881428:+|nuORF	ENST00000307602.8_1_8:42881248-42881428:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.806396484375	2	552.802426	1103.5903	1.8187	0.0010054	1.9052	0.0010532	3.7238	0.0020586	552.8036486150094	37.211	0.79803	37.211	36.812	37.61	0					32	16	3	0	0	0	0.30841	1	14538	14538		51.335	1.8939	1	646290			11635	8531	7501	7534	11823	11823					0.04264681905624457
FSVLSTSQ	8	Unmodified	_FSVLSTSQ_					0	0	0		nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	nc|ENSG00000162711|Q96P20-5|NLRP3	nc|ENSG00000162711|Q96P20-5|NLRP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7232666015625	2	434.724175	867.433798	0.10153	4.4137E-05	0.26743	0.00011626	0.36896	0.0001604	434.7242001903039	24.429	0.11303	24.429	24.324	24.437	0					4	2	2	0	0	0	0.41701	1	8215	8215		68.787	2.9837	1	52642			11636	5493	7502	7535	11824	11824					-0.005221832648544478
FSVNGKVL	8	Unmodified	_FSVNGKVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2527160644531	2	432.252903	862.491253	-0.47016	-0.00020323	-0.14745	-6.3736E-05	-0.61761	-0.00026697	432.2530426088434	35.637	0.18996	35.637	35.521	35.711	0					11	5	3	0	0	0	0.2678	1	13370	13370		93.195	7.836	1	216370			11637	2223	7503	7536	11825	11825					0.05450703731378326
FSVNGKVL	8	Unmodified	_FSVNGKVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.25311279296875	2	432.252903	862.491253	-0.79295	-0.00034275	0.63374	0.00027393	-0.15921	-6.8819E-05	432.25305519234416	35.391	0.13083	35.391	35.31	35.441	0					9	6	2	0	0	0	0.35045	1	11973	11973		76.774	13.468	1	66657			11638	2223	7503	7536	11826	11826					0.05450703731378326
FSVPGGHKLY	10	Unmodified	_FSVPGGHKLY_					0	0	0		nc|ENSG00000183347|Q6ZN66-2|GBP6;GBP6|p.N587Kfs*2|1|0.28|ENSG00000183347|chr1:89385321-89385322|-/A|frameshift_variant;GBP6|p.N587Mfs*18|2|0.17|ENSG00000183347|chr1:89385322-89385322|A/-|frameshift_variant;ENSG00000183347|ENST00000370456|GBP6	nc|ENSG00000183347|Q6ZN66-2|GBP6	nc|ENSG00000183347|Q6ZN66-2|GBP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8012084960938	2	552.795466	1103.57638	3.6592	0.0020228	3.9172	0.0021654	7.5764	0.0041882	552.7971066126994	42.167	0.38934	42.167	42.053	42.443	0					15	10	2	0	0	0	0.36647	1	16799	16799		56.721	4.4219	1	200960			11639	6955	7504	7537	11827	11827					0.028734491971817988
FSVPPGKF	8	Unmodified	_FSVPPGKF_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.7413330078125	2	439.742171	877.469789	-0.56033	-0.0002464	1.5058	0.00066217	0.94549	0.00041577	439.742748632047	34.793	0.45775	34.793	34.489	34.947	0					15	9	2	0	0	0	0.49216	1	13383	13383		60.972	20.399	1	101280	+		11640	13294	7505	7538	11828	11828					0.02615318702657987
FSVSGKMGL	9	Unmodified	_FSVSGKMGL_					0	0	0			REV__ENST00000481138.5_1_9:99614242-99615248:-|nuORF	REV__ENST00000481138.5_1_9:99614242-99615248:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2457580566406	2	463.244221	924.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.588	1	16.588	16.088	17.088	0								0	0	0	0.21054	1	4622	4622		49.442	1.5259	1		+		11641	19598	7506	7539	11829	11829					0.00863040134061066
FSVSSASLVEV	11	Unmodified	_FSVSSASLVEV_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7964477539062	2	562.795329	1123.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.729	1	30.729	30.229	31.229	0								0	0	0	0.45674	1	11517	11517		14.137	0.68308	1				11642	6249	7507	7540	11830	11830					0.019259846866589214
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.75848388671875	2	439.758352	877.502152	0.27736	0.00012197	-0.42312	-0.00018607	-0.14576	-6.41E-05	439.75819058671306	36.942	0.24028	36.942	36.871	37.111	0					24	12	3	0	0	0	0.41	1	12094	12094		69.628	10.846	1	296340			11643	2223	7508	7541	11831	11831					0.058501061056517756
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.75787353515625	2	439.758352	877.502152	-0.28371	-0.00012476	0.20045	8.8151E-05	-0.083252	-3.6611E-05	439.7587176108846	36.953	0.1299	36.953	36.885	37.015	0					9	6	2	0	0	0	0.53424	1	12106	12106		56.721	10.769	1	37420			11644	2223	7508	7541	11832	11832					0.058501061056517756
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.7583312988281	2	439.758352	877.502152	-0.36329	-0.00015976	0.27578	0.00012128	-0.087512	-3.8484E-05	439.758468513851	37.257	0.25981	37.257	37.131	37.391	0					14	7	3	0	0	0	0.66095	1	14101	14101		39.253	2.0937	1	170860			11645	2223	7508	7541	11833	11833					0.058501061056517756
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.75836181640625	2	439.758352	877.502152	-1.0254	-0.00045095	0.46676	0.00020526	-0.55868	-0.00024569	439.758546253086	37.023	0.24507	37.023	36.923	37.168	0					32	13	3	0	0	0	0.24806	1	12508	12508		104.75	38.317	1	427090			11646	2223	7508	7541	11834	11834					0.058501061056517756
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.7578125	2	439.758352	877.502152	-0.57952	-0.00025485	0.42719	0.00018786	-0.15233	-6.699E-05	439.7585334915989	37.013	0.28659	37.013	36.892	37.178	0					27	12	3	0	0	0	0.39125	1	13225	13225		71.877	16.373	1	378520			11647	2223	7508	7541	11835	11835					0.058501061056517756
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.758056640625	2	439.758352	877.502152	-0.55911	-0.00024588	0.20304	8.929E-05	-0.35607	-0.00015659	439.75834923054924	37.176	0.30842	37.176	37.023	37.332	0					13	6	3	0	0	0	0.46013	1	14497	14497		64.207	6.396	1	497630			11648	2223	7508	7541	11836	11836					0.058501061056517756
FSWPGTHRA	9	Unmodified	_FSWPGTHRA_					0	0	0		ENST00000498554.5_1_19:2097388-2099029:+|nuORF;ENSG00000099840|ENST00000395301|IZUMO4	ENST00000498554.5_1_19:2097388-2099029:+|nuORF	ENST00000498554.5_1_19:2097388-2099029:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7608032226562	2	529.761958	1057.50936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.754	1	41.754	41.254	42.254	0								0	0	0	0.23459	1	16418	16418		45.952	3.4775	1				11649	10138	7509	7542	11837	11837					-0.017091612939111656
FSWRLQLR	8	Unmodified	_FSWRLQLR_					0	0	0			REV__ENST00000482320.5_1_7:128681673-128694729:-|nuORF	REV__ENST00000482320.5_1_7:128681673-128694729:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3164672851562	2	553.3169	1104.61925	0.62525	0.00034596	-1.2886	-0.00071298	-0.66331	-0.00036702	553.3160682177172	40.386	0.21609	40.386	40.261	40.477	0					16	9	2	0	0	0	0.59773	1	15385	15385		23.042	0	1	103100	+		11650	19611	7510	7543	11838	11838					0.07112264045258598
FSWRLQLR	8	Unmodified	_FSWRLQLR_					0	0	0			REV__ENST00000482320.5_1_7:128681673-128694729:-|nuORF	REV__ENST00000482320.5_1_7:128681673-128694729:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.31591796875	2	553.3169	1104.61925	1.6113	0.00089154	-2.2474	-0.0012435	-0.63616	-0.000352	553.8169415525334	40.39	0.27859	40.39	40.168	40.447	0					22	11	3	0	0	0	0.5535	1	15881	15881		27.882	0	1	150170	+		11651	19611	7510	7543	11839	11839					0.07112264045258598
FSWSSAFTK	9	Unmodified	_FSWSSAFTK_					0	0	0		nc|ENSG00000146757|Q03936-2|ZNF92;nc|ENSG00000146757|Q03936-3|ZNF92;ENSG00000146757|ENST00000328747|ZNF92	nc|ENSG00000146757|Q03936-2|ZNF92	nc|ENSG00000146757|Q03936-2|ZNF92	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7572021484375	2	530.758549	1059.50255	0.37226	0.00019758	-3.834	-0.0020349	-3.4617	-0.0018373	530.7563264918307	27.41	0.09663	27.41	27.345	27.442	0					6	3	2	0	0	0	0.35021	1	8722	8722		45.972	6.7194	1	76348			11652	4745	7511	7544	11840	11840					-0.024825189651664914
FSYRAALEY	9	Unmodified	_FSYRAALEY_					0	0	0		nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.2764282226562	2	560.277106	1118.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.777	1	22.777	22.277	23.277	0								0	0	0	0.27939	1	6492	6492		39.253	4.0521	1				11653	5057	7512	7545	11841	11841					-0.014868474193917791
FTADVRSVL	9	Unmodified	_FTADVRSVL_					0	0	0		ENST00000570484.1_1_17:7147506-7148078:-|nuORF;ENSG00000175826|ENST00000574322|CTDNEP1	ENST00000570484.1_1_17:7147506-7148078:-|nuORF	ENST00000570484.1_1_17:7147506-7148078:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2795715332031	2	504.279649	1006.54475	1.203	0.00060664	-1.7816	-0.00089843	-0.57864	-0.00029179	504.2787945007708	41.634	0.23011	41.634	41.557	41.787	0					11	6	3	0	0	0	0.25761	1	16585	16585		54.722	10.606	1	161790			11654	6579	7513	7546	11842	11842					0.04173456443231771
FTAGSTPPQL	10	Unmodified	_FTAGSTPPQL_					0	0	0			REV__ENST00000263212.9_2_22:22274709-22275219:-|nuORF	REV__ENST00000263212.9_2_22:22274709-22275219:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.1770935058594	3	340.178313	1017.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.869	1	35.869	35.369	36.369	0								0	0	0	0.4201	1	11760	11760		16.717	0	1		+		11655	18041	7514	7547	11843	11843					0.0050546368928507945
FTAIREASL	9	Unmodified	_FTAIREASL_					0	0	0		CDK14|p.L228Cfs*6|1|0.16|ENSG00000058091|chr7:90899327-90899327|G/-|frameshift_variant;CDK14|p.E269Sfs*2|1|0.3|ENSG00000058091|chr7:90917699-90917699|G/-|frameshift_variant;ENST00000451080.5_1_2:202672326-202741280:+|nuORF;nc|ENSG00000138395|Q96Q40-6|CDK15;ENST00000488419.1_1_2:202671387-202725552:+|nuORF;nc|ENSG00000138395|Q96Q40-4|CDK15;nc|ENSG00000138395|Q96Q40-3|CDK15;CDK15|p.C410Wfs*2|1|0.09|ENSG00000138395|chr2:201890832-201890833|-/G|frameshift_variant;nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14	CDK14|p.L228Cfs*6|1|0.16|ENSG00000058091|chr7:90899327-90899327|G/-|frameshift_variant	CDK14|p.L228Cfs*6|1|0.16|ENSG00000058091|chr7:90899327-90899327|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.27801513671875	2	504.279649	1006.54475	1.0302	0.00051952	-2.3337	-0.0011768	-1.3035	-0.00065732	504.27841568641446	37.39	0.98569	37.39	36.894	37.88	0					72	30	3	0	0	0	0.12834	1	14613	14613		72.879	0	1	1010500			11656	459	7515	7548	11844	11844					0.04173456443231771
FTAIREASL	9	Unmodified	_FTAIREASL_					0	0	0		CDK14|p.L228Cfs*6|1|0.16|ENSG00000058091|chr7:90899327-90899327|G/-|frameshift_variant;CDK14|p.E269Sfs*2|1|0.3|ENSG00000058091|chr7:90917699-90917699|G/-|frameshift_variant;ENST00000451080.5_1_2:202672326-202741280:+|nuORF;nc|ENSG00000138395|Q96Q40-6|CDK15;ENST00000488419.1_1_2:202671387-202725552:+|nuORF;nc|ENSG00000138395|Q96Q40-4|CDK15;nc|ENSG00000138395|Q96Q40-3|CDK15;CDK15|p.C410Wfs*2|1|0.09|ENSG00000138395|chr2:201890832-201890833|-/G|frameshift_variant;nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14	CDK14|p.L228Cfs*6|1|0.16|ENSG00000058091|chr7:90899327-90899327|G/-|frameshift_variant	CDK14|p.L228Cfs*6|1|0.16|ENSG00000058091|chr7:90899327-90899327|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2797546386719	2	504.279649	1006.54475	-0.45785	-0.00023088	0.091396	4.6089E-05	-0.36645	-0.00018479	504.279696709228	37.51	0.93068	37.51	36.915	37.846	0					52	28	2	0	0	0	0.21263	1	14569	14569		60.118	1.8883	1	867710			11657	459	7515	7548	11845	11845					0.04173456443231771
FTAKAIEGM	9	Unmodified	_FTAKAIEGM_					0	0	0			REV__nc|ENSG00000113282|Q14677-2|CLINT1	REV__nc|ENSG00000113282|Q14677-2|CLINT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.24951171875	2	484.249503	966.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.844	1	42.844	42.344	43.344	0								0	0	0	0.12601	1	16210	16210		65.465	6.6834	1		+		11658	14033	7516	7549	11846	11846					-0.00012977211497400276
FTALCPARPL	10	Unmodified	_FTALCPARPL_					0	0	0			REV__SSBP3|p.N49Tfs*95|3|0.3|ENSG00000157216|chr1:54404621-54404621|T/-|frameshift_variant	REV__SSBP3|p.N49Tfs*95|3|0.3|ENSG00000157216|chr1:54404621-54404621|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.8014526367188	2	544.799694	1087.58484	0.32691	0.0001781	3.4141	0.00186	3.741	0.0020381	544.8017485504569	35.754	0.22934	35.754	35.624	35.853	0					10	6	2	0	0	0	0.57211	1	13913	13913		25.574	5.5773	1	121990	+		11659	21605	7517	7550	11847	11847					0.04454679842137921
FTAPPRAPR	9	Unmodified	_FTAPPRAPR_					0	0	0			REV__ENST00000514698.5_1_4:980866-997838:+|nuORF	REV__ENST00000514698.5_1_4:980866-997838:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.1934814453125	3	338.194409	1011.5614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.073	1	46.073	45.573	46.573	0								0	0	0	0.37821	1	14245	14245		12.812	2.2249	1		+		11660	19905	7518	7551	11848	11848					0.05608002119845423
FTAPPVLGK	9	Unmodified	_FTAPPVLGK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2754821777344	2	465.276378	928.538203	-0.1377	-6.407E-05	-1.1411	-0.00053095	-1.2788	-0.00059502	465.2757363592846	34.543	0.28004	34.543	34.466	34.746	0					16	7	3	0	0	0	0.2873	1	13335	13335		51.335	7.2187	1	99584			11661	3494	7519	7552	11849	11849					0.07107563282522733
FTAPPVLGK	9	Unmodified	_FTAPPVLGK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2760009765625	2	465.276378	928.538203	-0.49108	-0.00022849	-0.021635	-1.0066E-05	-0.51272	-0.00023856	465.2762343586737	34.508	0.55468	34.508	34.393	34.947	0					16	11	3	0	0	0	0.062676	1	13238	13238		90.777	8.4716	1	150040			11662	3494	7519	7552	11850	11850					0.07107563282522733
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.24786376953125	2	454.247818	906.481082	0.0055715	2.5308E-06	-0.53923	-0.00024494	-0.53366	-0.00024241	454.2476410609861	24.656	0.25966	24.656	24.508	24.768	0					17	7	3	0	0	0	0.21263	1	7287	7287		60.118	10.677	1	469120			11663	4405	7520	7553	11851	11851					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2475891113281	2	454.247818	906.481082	-1.1704	-0.00053167	0.76029	0.00034536	-0.41015	-0.00018631	454.2481328931249	24.668	0.22703	24.668	24.556	24.784	0					12	8	2	0	0	0	0.19605	1	7578	7578		62.107	8.756	1	155410			11664	4405	7520	7553	11852	11852					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2477111816406	2	454.247818	906.481082	-0.12907	-5.8628E-05	-0.41735	-0.00018958	-0.54641	-0.00024821	454.24769245459197	24.895	0.46125	24.895	24.661	25.122	0					21	9	4	0	0	0	0.1424	1	8742	8742		69.628	3.1983	1	925770			11665	4405	7520	7553	11853	11853					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2477111816406	2	454.247818	906.481082	0.72112	0.00032757	-0.95357	-0.00043316	-0.23245	-0.00010559	454.24728216644405	24.899	0.45928	24.899	24.746	25.205	0					18	9	3	0	0	0	0.056004	1	8783	8783		93.143	26.714	1	900760			11666	4405	7520	7553	11854	11854					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.24798583984375	2	454.247818	906.481082	0.25076	0.00011391	0.032155	1.4606E-05	0.28291	0.00012851	454.2476613578834	24.749	0.19194	24.749	24.609	24.801	0					7	4	2	0	0	0	0.10915	1	7738	7738		77.318	14.011	1	203160			11667	4405	7520	7553	11855	11855					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2475891113281	2	454.247818	906.481082	0.066798	3.0343E-05	-0.37307	-0.00016947	-0.30627	-0.00013912	454.24756185878584	24.729	0.46104	24.729	24.594	25.055	0					17	10	3	0	0	0	0.078509	1	7748	7748		85.161	24.189	1	236130			11668	4405	7520	7553	11856	11856					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.24725341796875	2	454.247818	906.481082	-0.4209	-0.00019119	-0.19998	-9.0841E-05	-0.62088	-0.00028203	454.2476408305681	24.863	0.60491	24.863	24.676	25.281	0					30	12	4	0	0	0	0.026538	1	8603	8603		112.41	24.657	1	1718500			11669	4405	7520	7553	11857	11857					0.02410096006144613
FTAVEVKSGA	10	Unmodified	_FTAVEVKSGA_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7733154296875	2	504.771657	1007.52876	2.9337	0.0014808	-0.31559	-0.0001593	2.6181	0.0013215	504.77156673902454	22.614	0.21617	22.614	22.505	22.722	0					17	4	5	0	0	0	0.12763	1	7561	7561		90.601	13.827	1	1786400	+		11670	21136	7521	7554	11858	11858					0.025297502063381216
FTCAGGAVW	9	Unmodified	_FTCAGGAVW_					0	0	0			REV__ENSG00000243279|ENST00000553851|PRAF2	REV__ENSG00000243279|ENST00000553851|PRAF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.2081604003906	2	456.207638	910.400723	-0.38108	-0.00017385	1.7895	0.00081638	1.4084	0.00064253	456.2084707399655	25.249	0.18595	25.249	25.176	25.362	0					8	5	2	0	0	0	0.50461	1	7591	7591		31.955	0	1	100550	+		11671	17700	7522	7555	11859	11859					-0.05806088588553848
FTCLSDAVKT	10	Unmodified	_FTCLSDAVKT_					0	0	0		tr|U7SL68|U7SL68_FUSNUTriosephosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tpiAPE=3SV=1	tr|U7SL68|U7SL68_FUSNUTriosephosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tpiAPE=3SV=1	tr|U7SL68|U7SL68_FUSNUTriosephosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tpiAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.769287109375	2	542.7708	1083.52705	-1.489	-0.00080819	-0.61551	-0.00033408	-2.1045	-0.0011423	542.7702590671641	33.286	0.29984	33.286	33.083	33.382	0					19	9	4	0	0	0	0.536	1	11655	11655		41.427	2.1738	1	193960			11672	22637	7523	7556	11860	11860					-0.011376268739468287
FTDEEEVQID	10	Unmodified	_FTDEEEVQID_					0	0	0		ENST00000395811.9_1_17:17091142-17091328:+|nuORF	ENST00000395811.9_1_17:17091142-17091328:+|nuORF	ENST00000395811.9_1_17:17091142-17091328:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	612.766357421875	2	612.766965	1223.51938	-0.63847	-0.00039123	-0.99648	-0.00061061	-1.6349	-0.0010018	612.7662093564123	18.968	0.16658	18.968	18.898	19.065	0					11	5	3	0	0	0	0.41384	1	5050	5050		54.722	5.1863	1	222180			11673	9195	7524	7557	11861	11861					-0.08344107660514055
FTDEEEVQID	10	Unmodified	_FTDEEEVQID_					0	0	0		ENST00000395811.9_1_17:17091142-17091328:+|nuORF	ENST00000395811.9_1_17:17091142-17091328:+|nuORF	ENST00000395811.9_1_17:17091142-17091328:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.7655029296875	2	612.766965	1223.51938	-1.9936	-0.0012216	-0.16805	-0.00010298	-2.1616	-0.0013246	612.766672028408	19.054	0.097548	19.054	19.009	19.107	0					4	2	2	0	0	0	0.27065	1	5107	5107		70.816	14.382	1	138660			11674	9195	7524	7557	11862	11862					-0.08344107660514055
FTDENVVGSPC	11	Carbamidomethyl (C)	_FTDENVVGSPC(Carbamidomethyl (C))_	FTDENVVGSPC(1)		FTDENVVGSPC(75)		0	1	0			REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.7658081054688	2	612.763703	1223.51285	0.94852	0.00058122	2.2781	0.001396	3.2267	0.0019772	612.7652690641207	19.172	0.26405	19.172	19.066	19.33	0					14	5	4	0	0	0	0.1937	1	6027	6027		75.043	9.5779	1	1111500	+		11675	16868	7525	7558	11863	11863	598				-0.08996324092868235
FTDENVVGSPC	11	Carbamidomethyl (C)	_FTDENVVGSPC(Carbamidomethyl (C))_	FTDENVVGSPC(1)		FTDENVVGSPC(65)		0	1	0			REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.765625	2	612.763703	1223.51285	2.975	0.001823	0.068737	4.212E-05	3.0438	0.0018651	612.7639098106308	19.17	0.26335	19.17	19.063	19.326	0					12	5	4	0	0	0	0.27467	1	5888	5888		65.465	8.7443	1	1099600	+		11676	16868	7525	7558	11864	11864	598				-0.08996324092868235
FTDPKLAL	8	Unmodified	_FTDPKLAL_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7621154785156	2	452.760561	903.506569	3.8936	0.0017629	-0.37487	-0.00016972	3.5188	0.0015932	452.7605094271702	40.37	0.26445	40.37	40.265	40.529	0					31	15	3	0	0	0	0.35045	1	13501	13501		76.774	27.333	1	387190			11677	3741	7526	7559	11865	11865					0.0509557052856735
FTDTETEEPGV	11	Unmodified	_FTDTETEEPGV_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.7656860351562	2	612.766965	1223.51938	-0.86358	-0.00052918	-1.2322	-0.00075506	-2.0958	-0.0012842	612.7662636244742	19.302	0.15759	19.302	19.198	19.356	0					8	3	3	0	0	0	0.37008	1	5813	5813		54.776	5.2403	1	516310	+		11678	17046	7527	7560	11866	11866					-0.08344107660536793
FTEPQFLPL	9	Unmodified	_FTEPQFLPL_					0	0	0		nc|ENSG00000163357|Q5T197-2|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2924194335938	2	546.292225	1090.5699	0.33355	0.00018222	0.33745	0.00018435	0.671	0.00036656	546.29229224358	23.737	0.11708	23.737	23.679	23.796	0					4	2	2	0	0	0	0.22377	1	8233	8233		58.782	7.5893	1	138930			11679	11615	7528	7561	11867	11867					0.028235112458105505
FTFSGREL	8	Unmodified	_FTFSGREL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.74493408203125	2	478.745442	955.476331	0.4438	0.00021247	-0.79275	-0.00037952	-0.34894	-0.00016705	478.7449871715756	39.242	0.28109	39.242	39.131	39.412	0					14	9	2	0	0	0	0.66095	1	14918	14918		39.253	0	1	171670			11680	3401	7529	7562	11868	11868					-0.003187881366102374
FTFSGREL	8	Unmodified	_FTFSGREL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.74530029296875	2	478.745442	955.476331	0.65741	0.00031473	-1.0267	-0.00049152	-0.36927	-0.00017678	478.74489670595426	39.224	0.35598	39.224	39.107	39.463	0					26	12	3	0	0	0	0.24806	1	15401	15401		104.75	14.377	1	760820			11681	3401	7529	7562	11869	11869					-0.003187881366102374
FTFSGREL	8	Unmodified	_FTFSGREL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7452087402344	2	478.745442	955.476331	0.88406	0.00042324	-1.0234	-0.00048997	-0.13939	-6.6733E-05	478.74506233203414	39.164	0.73615	39.164	39.015	39.752	0					29	16	4	0	0	0	0.48092	1	15444	15444		62.107	7.3311	1	1409100			11682	3401	7529	7562	11870	11870					-0.003187881366102374
FTGLIGPMK	9	Unmodified	_FTGLIGPMK_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900;ENST00000467010.2_1_8:92169620-92169905:+|nuORF;ENST00000497797.5_1_3:148905800-148917562:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2695007324219	2	482.270238	962.525924	-1.3129	-0.00063318	0.30514	0.00014716	-1.0078	-0.00048602	482.2706124046202	35.76	0.21748	35.76	35.695	35.912	0					25	10	4	0	0	0	0.30951	1	12094	12094		49.442	49.442	1	417730		+	11683	622;1220	7530	7563	11871	11871					0.04316203547830355
FTGLIGPMK	9	Unmodified	_FTGLIGPMK_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900;ENST00000467010.2_1_8:92169620-92169905:+|nuORF;ENST00000497797.5_1_3:148905800-148917562:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2699890136719	2	482.270238	962.525924	0.69037	0.00033294	-1.1391	-0.00054933	-0.44869	-0.00021639	482.26977761987	35.989	0.32981	35.989	35.884	36.214	0					28	10	3	0	0	0	0.27249	1	13977	13977		52.937	6.1703	1	1966800		+	11684	622;1220	7530	7563	11872	11872					0.04316203547830355
FTGLIGPMK	9	Unmodified	_FTGLIGPMK_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900;ENST00000467010.2_1_8:92169620-92169905:+|nuORF;ENST00000497797.5_1_3:148905800-148917562:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.27001953125	2	482.270238	962.525924	-0.28251	-0.00013624	-0.32404	-0.00015627	-0.60655	-0.00029252	482.26999174091156	35.783	0.18187	35.783	35.688	35.869	0					15	6	3	0	0	0	0.16002	1	12777	12777		66.429	5.4573	1	193390		+	11685	622;1220	7530	7563	11873	11873					0.04316203547830355
FTGSPNSLVV	10	Unmodified	_FTGSPNSLVV_					0	0	0			REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6	REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7715148925781	2	510.771657	1019.52876	0.97842	0.00049975	-0.37176	-0.00018988	0.60666	0.00030986	510.7713173978626	32.293	1.417	32.293	31.613	33.03	0					43	35	2	0	0	0	0.44601	1	12012	12012		51.193	6.8155	1	164450	+		11686	20975	7531	7564	11874	11874					0.019777502063448082
FTGSSKIL	8	Unmodified	_FTGSSKIL_					0	0	0		CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant;ENSG00000079112|ENST00000027335|CDH17	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.7449035644531	2	426.744911	851.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.14	1	30.14	29.64	30.64	0								0	0	0	1.7419	1	11235	11235		32.812	2.3088	1				11687	448	7532	7565	11875	11875					0.043589974944893584
FTGTLGIGA	9	Unmodified	_FTGTLGIGA_					0	0	0			REV__ENST00000511359.1_1_5:23303923-23304922:-|nuORF	REV__ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.7292785644531	2	418.729261	835.443968	-0.047527	-1.9901E-05	0.23668	9.9105E-05	0.18915	7.9204E-05	418.7294091152384	24.347	0.098808	24.347	24.301	24.4	0					4	2	2	0	0	0	0.57706	1	7591	7591		24.203	2.2429	1	63024	+		11688	19878	7533	7566	11876	11876					0.019664244603859515
FTIKLGKGSG	10	Unmodified	_FTIKLGKGSG_					0	0	0		tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1	tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1	tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5337829589844	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.052	1	48.052	47.552	48.552	0								0	0	0	0.4201	1	18253	18253		20.03	6.5764	1				11689	22694	7534	7567	11877	11877					0.07810333339955378
FTISHHTSLL	10	Unmodified	_FTISHHTSLL_					0	0	0			REV__ENSG00000176231|ENST00000322107|OR10H4	REV__ENSG00000176231|ENST00000322107|OR10H4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.309814453125	2	578.31148	1154.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.363	1	25.363	24.863	25.863	0								0	0	0	0.29594	1	8993	8993		47.657	19.775	1		+		11690	16650	7535	7568	11878	11878					0.03728816880334307
FTKKLMEK	8	Unmodified	_FTKKLMEK_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7946166992188	2	512.79662	1023.57869	-1.6869	-0.00086501	-2.1081	-0.001081	-3.7949	-0.001946	512.7950798015818	27.825	0.17759	27.825	27.73	27.907	0					6	4	2	0	0	0	0.46013	1	9161	9161		64.207	5.4253	1	63007	+		11691	14494	7536	7569	11879	11879					0.06784161610642059
FTLCYSTKL	9	Unmodified	_FTLCYSTKL_					0	0	0			REV__ENST00000487773.1_1_2:38972277-38975875:-|nuORF	REV__ENST00000487773.1_1_2:38972277-38975875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2828369140625	2	538.27826	1074.54197	4.9549	0.0026671	2.581	0.0013893	7.5359	0.0040564	538.2797313743358	30.023	0.15617	30.023	29.932	30.088	0					9	5	3	0	0	0	0.16002	1	9823	9823		66.429	6.311	1	80768	+		11692	19164	7537	7570	11880	11880					0.0076786499405443465
FTLLIDIID	9	Unmodified	_FTLLIDIID_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8089599609375	2	531.807708	1061.60086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.933	1	45.933	45.433	46.433	0								0	0	0	0.32356	1	18398	18398		30.504	1.3541	1		+		11693	16012	7538	7571	11881	11881					0.07252664560041922
FTLPCGLSP	9	Unmodified	_FTLPCGLSP_					0	0	0		ENST00000520547.3_1_10:81273425-81273470:+|nuORF	ENST00000520547.3_1_10:81273425-81273470:+|nuORF	ENST00000520547.3_1_10:81273425-81273470:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.74041748046875	2	467.738771	933.462989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.01	1	19.01	18.51	19.51	0								0	0	0	0.13522	1	5936	5936		63.306	0.32785	1				11694	10300	7539	7572	11882	11882					-0.006403622402103792
FTLTRRSRS	9	Unmodified	_FTLTRRSRS_					0	0	0			REV__ENST00000469563.1_1_1:894013-894620:-|nuORF	REV__ENST00000469563.1_1_1:894013-894620:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.3217163085938	2	562.320171	1122.62579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.712	1	20.712	20.212	21.212	0								0	0	0	0.27025	1	5876	5876		40.778	3.6191	1		+		11695	19457	7540	7573	11883	11883					0.06938157205991047
FTLVGLEEPL	10	Unmodified	_FTLVGLEEPL_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.209716796875	3	373.209502	1116.60668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.502	1	39.502	39.002	40.002	0								0	0	0	0.4201	1	15539	15539		14.694	0	1				11696	7621	7541	7574	11884	11884					0.053037630717199136
FTNEGRAL	8	Unmodified	_FTNEGRAL_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.23480224609375	2	454.235242	906.45593	0.0043711	1.9855E-06	-1.4913	-0.00067738	-1.4869	-0.0006754	454.23466700930373	24.437	0.18479	24.437	24.367	24.552	0					7	5	2	0	0	0	0.34592	1	7221	7221		77.318	10.888	1	119400			11697	6264	7542	7575	11885	11885					-0.0010395879644420347
FTNEGRAL	8	Unmodified	_FTNEGRAL_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2348937988281	2	454.235242	906.45593	0.70916	0.00032213	-1.1427	-0.00051904	-0.43351	-0.00019692	454.2346425150301	24.748	0.14171	24.748	24.656	24.798	0					11	3	4	0	0	0	0.42778	1	8381	8381		67.494	10.773	1	1112900			11698	6264	7542	7575	11886	11886					-0.0010395879644420347
FTNEGRAL	8	Unmodified	_FTNEGRAL_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.23486328125	2	454.235242	906.45593	0.25133	0.00011416	-1.3022	-0.00059149	-1.0508	-0.00047733	454.2349048632591	24.559	0.14022	24.559	24.439	24.579	0					5	3	2	0	0	0	0.35045	1	7672	7672		76.774	21.27	1	59147			11699	6264	7542	7575	11887	11887					-0.0010395879644420347
FTNEGRAL	8	Unmodified	_FTNEGRAL_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.23486328125	2	454.235242	906.45593	-0.42152	-0.00019147	-0.19228	-8.7342E-05	-0.6138	-0.00027881	454.23516997680315	24.661	0.2575	24.661	24.53	24.787	0					14	5	4	0	0	0	0.30066	1	8536	8536		82.75	13.964	1	729190			11700	6264	7542	7575	11888	11888					-0.0010395879644420347
FTNQSLWEMP	10	Unmodified	_FTNQSLWEMP_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.785888671875	2	626.786981	1251.55941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.426	1	16.426	15.926	16.926	0								0	0	0	0.4201	1	3734	3734		19.104	2.3861	1				11701	2079	7543	7576	11889	11889					-0.05630839470950377
FTPNPAGL	8	Unmodified	_FTPNPAGL_					0	0	0			REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL	REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.7154846191406	2	408.716153	815.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.032	1	35.032	34.532	35.532	0								0	0	0	1.7419	1	13104	13104		50.025	0	1		+		11702	12910	7544	7577	11890	11890					0.0026615528890943096
FTPTEATSIVA	11	Unmodified	_FTPTEATSIVA_					0	0	0		ENSG00000162415|ENST00000359600|ZSWIM5;ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000162415|ENST00000359600|ZSWIM5;ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000162415|ENST00000359600|ZSWIM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.7958984375	2	568.795329	1135.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.251	1	37.251	36.751	37.751	0								0	0	0	0.41918	1	14111	14111		32.812	1.2826	1				11703	5461;3643	7545	7578	11891	11891					0.01373984686665608
FTPVEITH	8	Unmodified	_FTPVEITH_					0	0	0			REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.24560546875	2	472.247818	942.481082	-1.4427	-0.00068132	-3.0491	-0.0014399	-4.4919	-0.0021213	472.24651164481276	21.981	0.094534	21.981	21.92	22.015	0					6	3	2	0	0	0	0.64096	1	6404	6404		42.474	0.078325	1	101520	+		11704	12186	7546	7579	11892	11892					0.007540960061305668
FTQAGNTTLQ	10	Unmodified	_FTQAGNTTLQ_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7697143554688	2	540.769645	1079.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.588	1	28.588	28.088	29.088	0								0	0	0	0.35072	1	9508	9508		42.864	2.0861	1		+		11705	17402	7547	7580	11893	11893					-0.011843392873743142
FTSPPSLFK	9	Unmodified	_FTSPPSLFK_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;FIP1L1|p.R473Lfs*2|1|0.5|ENSG00000145216|chr4:53453051-53453052|-/T|frameshift_variant;FIP1L1|p.D472Efs*3|1|0.45|ENSG00000145216|chr4:53453049-53453050|-/G|frameshift_variant;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2791137695312	2	512.279118	1022.54368	1.0501	0.00053796	-0.90067	-0.00046139	0.14946	7.6567E-05	512.2784813817445	39.897	0.31881	39.897	39.796	40.115	0					18	11	2	0	0	0	0.25716	1	15203	15203		54.776	1.4249	1	96599			11706	4660	7548	7581	11894	11894					0.03331242074330021
FTSPPSLFK	9	Unmodified	_FTSPPSLFK_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;FIP1L1|p.R473Lfs*2|1|0.5|ENSG00000145216|chr4:53453051-53453052|-/T|frameshift_variant;FIP1L1|p.D472Efs*3|1|0.45|ENSG00000145216|chr4:53453049-53453050|-/G|frameshift_variant;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2789306640625	2	512.279118	1022.54368	0.052759	2.7028E-05	0.056523	2.8956E-05	0.10928	5.5983E-05	512.2791190554531	39.805	0.76861	39.805	39.701	40.469	0					29	17	2	0	0	0	0.33044	1	15749	15749		47.657	1.7054	1	151680			11707	4660	7548	7581	11895	11895					0.03331242074330021
FTTDEEEEQ	9	Unmodified	_FTTDEEEEQ_					0	0	0		ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1	ENSG00000116885|ENST00000235532|OSCP1	ENSG00000116885|ENST00000235532|OSCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.723876953125	2	564.222391	1126.43023	1.8941	0.0010687	-2.3463	-0.0013238	-0.45225	-0.00025517	564.7226479570472	49.89	0.22552	49.89	49.793	50.018	0					24	8	4	0	0	0	0.61124	1	18790	18790		16.473	0.83134	1	217020			11708	3011	7549	7582	11896	11896					-0.1279294262003532
FTTFEIYNDF	10	Unmodified	_FTTFEIYNDF_					0	0	0			REV__tr|U7T401|U7T401_FUSNUPurinenucleosidephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00191PE=3SV=1	REV__tr|U7T401|U7T401_FUSNUPurinenucleosidephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00191PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	649.2909545898438	2	648.792786	1295.57102	-2.3655	-0.0015347	-2.318	-0.0015039	-4.6834	-0.0030386	648.7912431851211	30.618	0.15531	30.618	30.533	30.688	0					7	4	2	0	0	0	0.62235	1	10456	10456		31.53	2.3598	1	115090	+		11709	22155	7550	7583	11897	11897					-0.0649431917597667
FTTHHIQC	8	Unmodified	_FTTHHIQC_					0	0	0		ENST00000372309.7_2_9:133997886-133998192:+|nuORF	ENST00000372309.7_2_9:133997886-133998192:+|nuORF	ENST00000372309.7_2_9:133997886-133998192:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7313232421875	2	493.729269	985.443985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.372	1	18.372	17.872	18.872	0								0	0	0	1.7419	1	4561	4561		24.203	0.68005	1				11710	8975	7551	7584	11898	11898					-0.04931898811275914
FTTTAGRI	8	Unmodified	_FTTTAGRI_					0	0	0			REV__ENSG00000143196|ENST00000367817|DPT	REV__ENSG00000143196|ENST00000367817|DPT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.7397766113281	2	433.74016	865.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.664	1	35.664	35.164	36.164	0								0	0	0	1.7419	1	13391	13391		25.45	1.2474	1		+		11711	15176	7552	7585	11899	11899					0.027652292089555885
FTTVLDLVAQ	10	Unmodified	_FTTVLDLVAQ_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8090209960938	2	553.808239	1105.60193	0.011757	6.511E-06	1.1729	0.00064957	1.1847	0.00065608	553.8091181719631	26.35	0.21166	26.35	26.249	26.46	0					5	4	2	0	0	0	0.56931	1	9435	9435		37.812	2.6108	1	80061			11712	22812	7553	7586	11900	11900					0.05334878928965736
FTVIFFHFD	9	Unmodified	_FTVIFFHFD_					0	0	0		nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2;ENST00000484041.5_1_1:233225805-233270923:-|nuORF;ENST00000486012.5_1_1:233231420-233297095:-|nuORF;ENST00000520463.1_1_1:233261754-233296164:-|nuORF	nc|ENSG00000135749|A6NKB5-5|PCNX2	nc|ENSG00000135749|A6NKB5-5|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.7937622070312	2	586.792392	1171.57023	1.4306	0.00083947	-2.3017	-0.0013506	-0.87114	-0.00051118	586.7917836437775	40.371	0.39019	40.371	40.111	40.501	0					31	15	3	0	0	0	0.51817	1	15834	15834		30.504	3.8107	1	165670			11713	4018	7554	7587	11901	11901					-0.00869069034365566
FTVPMPSI	8	Oxidation (M)	_FTVPM(Oxidation (M))PSI_		FTVPM(1)PSI		FTVPM(68)PSI	0	0	1			REV__ENST00000530973.1_1_11:65111264-65113280:+|nuORF	REV__ENST00000530973.1_1_11:65111264-65113280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.23431396484375	2	454.233322	906.45209	0.064745	2.9409E-05	-1.7239	-0.00078306	-1.6592	-0.00075365	454.2325652423291	24.554	0.2743	24.554	24.467	24.741	0					11	6	3	0	0	0	0.41952	1	7664	7664		68.485	8.3664	1	252730	+		11714	20054	7555	7588	11902	11902		730			-0.004877646144905157
FTVTSLPPA	9	Unmodified	_FTVTSLPPA_					0	0	0		nc|ENSG00000124140|Q9H2X9|SLC12A5	nc|ENSG00000124140|Q9H2X9|SLC12A5	nc|ENSG00000124140|Q9H2X9|SLC12A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7593994140625	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.955	1	40.955	40.455	41.455	0								0	0	0	0.28996	1	15576	15576		37.159	0.13063	1				11715	11506	7556	7589	11903	11903					0.032992666659311
FVAAMAAGAGR	11	Unmodified	_FVAAMAAGAGR_					0	0	0			REV__ENST00000530623.5_1_11:67195959-67196605:+|nuORF	REV__ENST00000530623.5_1_11:67195959-67196605:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.26300048828125	2	511.266019	1020.51748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.077	1	29.077	28.577	29.577	0								0	0	0	0.24455	1	9435	9435		58.782	15.156	1		+		11716	20049	7557	7590	11904	11904					0.008046496311976625
FVADIFRRA	9	Unmodified	_FVADIFRRA_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.80859375	2	547.808908	1093.60326	-0.27836	-0.00015249	0.30188	0.00016537	0.023527	1.2888E-05	547.80903437328	27.893	0.26284	27.893	27.751	28.014	0					15	9	2	0	0	0	0.51991	1	8900	8900		23.042	0	1	113200			11717	3758	7558	7591	11905	11905					0.06020557808369631
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.7852783203125	2	556.784764	1111.55498	1.4226	0.0007921	-0.72756	-0.0004051	0.69506	0.000387	556.7844968886502	30.68	0.17403	30.68	30.61	30.784	0					15	7	3	0	0	0	0.07136	1	9793	9793		87.696	34.345	1	168550			11718	2871	7559	7592	11906	11906					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.784912109375	2	556.784764	1111.55498	1.8077	0.0010065	-0.80654	-0.00044907	1.0012	0.00055743	556.7842816505761	30.919	0.35199	30.919	30.788	31.14	0					23	8	5	0	0	0	0.00026591	1	11192	11192		190.26	99.892	1	1855500			11719	2871	7559	7592	11907	11907					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.7849731445312	2	556.784764	1111.55498	0.11682	6.5044E-05	0.44238	0.00024631	0.5592	0.00031135	556.7850345844406	30.713	0.201	30.713	30.645	30.846	0					13	7	3	0	0	0	0.095583	1	10109	10109		80.455	38.058	1	188160			11720	2871	7559	7592	11908	11908					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.784423828125	2	556.784764	1111.55498	0.56325	0.00031361	-0.058606	-3.2631E-05	0.50464	0.00028098	556.7845075535537	30.957	0.18422	30.957	30.827	31.012	0					7	4	2	0	0	0	0.026538	1	11600	11600		112.41	49.105	1	140030			11721	2871	7559	7592	11909	11909					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.7845458984375	2	556.784764	1111.55498	1.7013	0.00094725	-1.3454	-0.00074912	0.35584	0.00019812	556.7840087256143	30.941	0.27818	30.941	30.815	31.093	0					11	6	2	0	0	0	0.032383	1	11611	11611		106.68	37.055	1	779080			11722	2871	7559	7592	11910	11910					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.7855224609375	2	556.784764	1111.55498	1.6723	0.00093108	-0.97042	-0.00054031	0.70183	0.00039077	556.7842921162459	30.708	0.18883	30.708	30.632	30.821	0					8	5	2	0	0	0	0.037924	1	10497	10497		101.25	47.901	1	104300			11723	2871	7559	7592	11911	11911					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.7857055664062	2	556.784764	1111.55498	1.1274	0.00062773	-0.41512	-0.00023113	0.7123	0.0003966	556.7846349154205	30.724	0.25434	30.724	30.621	30.875	0					11	7	3	0	0	0	0.02953	1	10492	10492		109.48	37.601	1	206150			11724	2871	7559	7592	11912	11912					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.7853393554688	2	556.784764	1111.55498	1.1892	0.00066213	0.06917	3.8513E-05	1.2584	0.00070064	556.7847937824172	30.89	0.31272	30.89	30.78	31.093	0					18	6	4	0	0	0	0.0047071	1	11473	11473		159.28	66.08	1	1726600			11725	2871	7559	7592	11913	11913					0.003660193778159737
FVAEQKVEY	9	Unmodified	_FVAEQKVEY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.78515625	2	556.784764	1111.55498	1.8237	0.0010154	-1.0595	-0.00058992	0.76416	0.00042547	556.7840600095477	30.873	0.36222	30.873	30.714	31.076	0					22	7	4	0	0	0	0.026848	1	11489	11489		112.11	57.331	1	2587800			11726	2871	7559	7592	11914	11914					0.003660193778159737
FVAGFSGVVLA	11	Unmodified	_FVAGFSGVVLA_					0	0	0			REV__nc|ENSG00000051128|Q9NSC5-3|HOMER3	REV__nc|ENSG00000051128|Q9NSC5-3|HOMER3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.80078125	2	533.800217	1065.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.694	1	38.694	38.194	39.194	0								0	0	0	0.40668	1	12609	12609		35.618	1.6967	1		+		11727	20929	7560	7593	11915	11915					0.05571217482724933
FVAHFIVPE	9	Unmodified	_FVAHFIVPE_					0	0	0			REV__ENSG00000137561|ENST00000260116|TTPA	REV__ENSG00000137561|ENST00000260116|TTPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7886352539062	2	529.78711	1057.55967	-1.1879	-0.00062934	0.61699	0.00032687	-0.57093	-0.00030247	529.7875998908677	39.95	0.5716	39.95	39.796	40.367	0					41	30	2	0	0	0	0.5392	1	14188	14188		28.254	2.8041	1	137770	+		11728	14927	7561	7594	11916	11916					0.03318948311220993
FVAKEQEY	8	Unmodified	_FVAKEQEY_					0	0	0			REV__ENSG00000158716|ENST00000368107|DUSP23	REV__ENSG00000158716|ENST00000368107|DUSP23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.24884033203125	2	507.250557	1012.48656	0.16069	8.1509E-05	0.80831	0.00041002	0.969	0.00049153	507.25105562949267	32.259	0.68148	32.259	31.861	32.542	0					23	15	2	0	0	0	0.67394	1	12370	12370		37.159	6.6555	1	47164	+		11729	15692	7562	7595	11917	11917					-0.019182252020527812
FVARGTVL	8	Unmodified	_FVARGTVL_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.76055908203125	2	431.760895	861.507237	-0.48557	-0.00020965	-0.060274	-2.6024E-05	-0.54584	-0.00023567	431.7608070534361	39.087	0.31475	39.087	38.998	39.313	0					24	11	3	0	0	0	0.60719	1	14852	14852		47.916	7.343	1	528130			11730	5315	7563	7596	11918	11918					0.07094409968271975
FVARNGRQF	9	Unmodified	_FVARNGRQF_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7984619140625	2	547.796332	1093.57811	1.806	0.00098932	0.98632	0.0005403	2.7923	0.0015296	547.7969568084704	42.562	0.31589	42.562	42.426	42.742	0					36	16	3	0	0	0	0.49003	1	16676	16676		33.516	33.516	1	339660			11731	1957	7564	7597	11919	11919					0.03506503005792183
FVCHNRVQ	8	Carbamidomethyl (C)	_FVC(Carbamidomethyl (C))HNRVQ_	FVC(1)HNRVQ		FVC(45)HNRVQ		0	1	0			REV__ENST00000562325.5_1_16:65087800-65155878:-|nuORF	REV__ENST00000562325.5_1_16:65087800-65155878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2625732421875	2	530.261268	1058.50798	1.1297	0.00059905	-0.26224	-0.00013906	0.86747	0.00045999	530.2611218286075	39.633	0.33489	39.633	39.505	39.84	0					28	19	2	0	0	0	0.6282	1	12850	12850		44.531	14.027	1	72673	+		11732	20306	7565	7598	11920	11920	715				-0.018931186543113654
FVCHNRVQ	8	Carbamidomethyl (C)	_FVC(Carbamidomethyl (C))HNRVQ_	FVC(1)HNRVQ		FVC(45)HNRVQ		0	1	0			REV__ENST00000562325.5_1_16:65087800-65155878:-|nuORF	REV__ENST00000562325.5_1_16:65087800-65155878:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2619018554688	2	530.261268	1058.50798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.521	1	39.521	39.021	40.021	0								0	0	0	1.7419	1	14082	14082		44.531	15.382	1		+		11733	20306	7565	7598	11921	11921	715				-0.018931186543113654
FVDEGIKTL	9	Unmodified	_FVDEGIKTL_					0	0	0		ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.28326416015625	2	511.281857	1020.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.058	1	37.058	36.558	37.558	0								0	0	0	0.1633	1	12144	12144		56.721	3.7844	1				11734	1452	7566	7599	11922	11922					0.03970920866152028
FVDEGIKTL	9	Unmodified	_FVDEGIKTL_					0	0	0		ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2819519042969	2	511.281857	1020.54916	-0.0023471	-1.2E-06	-0.20633	-0.00010549	-0.20868	-0.00010669	511.28187550639575	37.353	0.17724	37.353	37.246	37.423	0					11	5	3	0	0	0	0.15558	1	14144	14144		66.962	15.626	1	215870			11735	1452	7566	7599	11923	11923					0.03970920866152028
FVDPRELAAA	10	Unmodified	_FVDPRELAAA_					0	0	0		CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.7882080078125	2	544.790381	1087.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.822	1	15.822	15.322	16.322	0								0	0	0	0.4201	1	3623	3623		22.58	0.61977	1				11736	679	7567	7600	11924	11924					0.025928414719373905
FVEKWYPVV	9	Unmodified	_FVEKWYPVV_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant;DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.81591796875	2	583.815867	1165.61718	0.11768	6.8701E-05	-0.15653	-9.1385E-05	-0.038854	-2.2683E-05	583.8160575330724	33.968	0.79232	33.968	33.859	34.651	0					33	16	4	0	0	0	0.20551	1	12953	12953		60.972	4.5381	1	507970			11737	4116	7568	7601	11925	11925					0.040997905167841964
FVELQGEEI	9	Unmodified	_FVELQGEEI_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.271240234375	2	532.268947	1062.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.711	1	37.711	37.211	38.211	0								0	0	0	0.25587	1	13493	13493		42.864	4.1107	1				11738	5131	7569	7602	11926	11926					-0.005419733761300449
FVFERLRQ	8	Unmodified	_FVFERLRQ_					0	0	0			REV__sp|P16739|UL119_HCMVAViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL119/UL118PE=2SV=2	REV__sp|P16739|UL119_HCMVAViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL119/UL118PE=2SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.809326171875	2	547.808908	1093.60326	0.32419	0.0001776	0.54796	0.00030018	0.87215	0.00047777	547.8092467664789	28.175	0.63337	28.175	27.931	28.565	0					32	13	3	0	0	0	0.66372	1	10232	10232		28.254	7.7724	1	495370	+		11739	21557	7570	7603	11927	11927					0.06020557808369631
FVFKYDASP	9	Unmodified	_FVFKYDASP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2698364257812	2	537.26875	1072.52295	1.3873	0.00074534	0.35063	0.00018838	1.7379	0.00093372	537.2690551835509	38.521	0.14919	38.521	38.44	38.589	0					12	8	2	0	0	0	0.47038	1	12566	12566		35.618	2.1027	1	35659	+		11740	15602;22247	7571	7604	11928	11928					-0.010413483053525852
FVGLRSAL	8	Unmodified	_FVGLRSAL_					0	0	0		tr|U7SK69|U7SK69_FUSNUV-typeH+-transportingATPasesubunitKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02121PE=3SV=1	tr|U7SK69|U7SK69_FUSNUV-typeH+-transportingATPasesubunitKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02121PE=3SV=1	tr|U7SK69|U7SK69_FUSNUV-typeH+-transportingATPasesubunitKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02121PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.76055908203125	2	431.760895	861.507237	0.99061	0.0004277	-1.8743	-0.00080924	-0.88367	-0.00038153	431.7600302076679	39.081	0.27469	39.081	38.952	39.227	0					14	9	2	0	0	0	0.74117	1	15342	15342		28.254	1.4582	1	192110			11741	22622	7572	7605	11929	11929					0.07094409968271975
FVGPSVTPRL	10	Unmodified	_FVGPSVTPRL_					0	0	0			REV__ENST00000265195.9_1_5:138532141-138532198:-|nuORF	REV__ENST00000265195.9_1_5:138532141-138532198:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8101806640625	2	536.811116	1071.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.442	1	14.442	13.942	14.942	0								0	0	0	0.4201	1	3746	3746		20.947	1.587	1		+		11742	18073	7573	7606	11930	11930					0.07474022231258459
FVGRERVQ	8	Unmodified	_FVGRERVQ_					0	0	0			REV__ENST00000290858.10_1_16:67063120-67063363:+|nuORF	REV__ENST00000290858.10_1_16:67063120-67063363:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7765808105469	2	495.777608	989.540663	-1.2195	-0.00060458	-0.25502	-0.00012643	-1.4745	-0.00073101	495.77742590928574	22.952	0.16066	22.952	22.878	23.039	0					7	5	2	0	0	0	0.68432	1	6836	6836		35.618	2.1027	1	70345	+		11743	18158	7574	7607	11931	11931					0.04547411740179541
FVGSHFSG	8	Unmodified	_FVGSHFSG_					0	0	0			REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF	REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.1980895996094	2	419.198128	836.381703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.816	1	22.816	22.316	23.316	0								0	0	0	1.7419	1	6861	6861		35.201	9.7505	1		+		11744	18418	7575	7608	11932	11932					-0.04303301887944144
FVGVHVRR	8	Unmodified	_FVGVHVRR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2;FUT1|p.R212C|1|0.36|ENSG00000174951|chr19:48750648-48750648|G/A|missense_variant;ENSG00000174951|ENST00000645652|FUT1;ENST00000430145.3_1_19:49166463-49183997:+|nuORF	ENSG00000176920|ENST00000425340|FUT2;ENST00000430145.3_1_19:49166463-49183997:+|nuORF	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.28985595703125	2	485.290685	968.566818	-0.24516	-0.00011897	-1.2832	-0.00062271	-1.5283	-0.00074169	485.29011631217355	39.302	0.32889	39.302	39.105	39.434	0					22	11	3	0	0	0	0.68754	1	14968	14968		35.201	3.6709	1	94465			11745	6634;9484	7576	7609	11933	11933					0.08127725702320276
FVGVTELVK	9	Unmodified	_FVGVTELVK_					0	0	0			REV__ENSG00000004142|ENST00000540200|POLDIP2	REV__ENSG00000004142|ENST00000540200|POLDIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.29266357421875	2	496.294768	990.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.182	1	16.182	15.682	16.682	0								0	0	0	0.11184	1	4427	4427		68.787	1.8249	1		+		11746	12822	7577	7610	11934	11934					0.0793181510841805
FVHESPAL	8	Unmodified	_FVHESPAL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2344970703125	2	450.23471	898.454868	-0.48094	-0.00021654	-0.17619	-7.9327E-05	-0.65713	-0.00029586	450.2345324797317	29.77	0.17084	29.77	29.682	29.853	0					9	4	3	0	0	0	0.527	1	10693	10693		57.453	1.9484	1	208150			11747	5145	7578	7611	11935	11935					0.001578268346634104
FVHPKPVSL	9	Unmodified	_FVHPKPVSL_					0	0	0		ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP	ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-5|MLXIP	nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.30419921875	2	512.302927	1022.5913	1.3678	0.00070072	-1.0136	-0.00051926	0.3542	0.00018146	512.8038775459856	29.613	0.26667	29.613	29.456	29.723	0					11	6	2	0	0	0	0.37197	1	10577	10577		44.117	14.967	1	61218			11748	6572;11655	7579	7612	11936	11936					0.08090941065177049
FVHPKPVSL	9	Unmodified	_FVHPKPVSL_					0	0	0		ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP	ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-5|MLXIP	nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.3034057617188	2	512.302927	1022.5913	0.50417	0.00025829	-0.1634	-8.371E-05	0.34077	0.00017458	512.303020556096	29.598	0.3996	29.598	29.334	29.734	0					13	8	2	0	0	0	0.087861	1	10976	10976		82.241	41.462	1	113870			11749	6572;11655	7579	7612	11937	11937					0.08090941065177049
FVHPKPVSL	9	Unmodified	_FVHPKPVSL_					0	0	0		ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP	ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-5|MLXIP	nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.302978515625	2	512.302927	1022.5913	0.052282	2.6784E-05	0.58818	0.00030133	0.64046	0.00032811	512.3031717495229	29.608	0.35688	29.608	29.358	29.715	0					11	7	2	0	0	0	0.39215	1	10855	10855		42.396	5.237	1	263650			11750	6572;11655	7579	7612	11938	11938					0.08090941065177049
FVIDGSKSL	9	Unmodified	_FVIDGSKSL_					0	0	0		nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2;nc|ENSG00000132561|O00339-4|MATN2	nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.26837158203125	2	483.26875	964.522947	0.88168	0.00042609	-2.3422	-0.0011319	-1.4605	-0.00070581	483.2676147529585	37.408	0.40744	37.408	37.3	37.708	0					13	8	2	0	0	0	0.14578	1	14705	14705		62.107	19.711	1	175810			11751	3798	7580	7613	11939	11939					0.03926651694678185
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.31103515625	2	538.808574	1075.60259	0.85698	0.00046175	0.33884	0.00018257	1.1958	0.00064431	538.8089117512992	38.325	0.16083	38.325	38.263	38.424	0					20	9	3	0	0	0	0.061298	1	12503	12503		95.815	29.386	1	231730			11752	6075;3126;11228	7581	7614	11940	11940					0.06781718368665679
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8085327148438	2	538.808574	1075.60259	0.24294	0.0001309	-0.089929	-4.8455E-05	0.15301	8.2443E-05	538.8085326371967	38.66	0.38508	38.66	38.485	38.87	0					32	15	3	0	0	0	0.017741	2	14681	14674;14681		120.87	66.092	1	1235000			11753	6075;3126;11228	7581	7614	11941;11942	11942					0.06781718368665679
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.8084716796875	2	538.808574	1075.60259	-0.18087	-9.7454E-05	1.7006	0.0009163	1.5197	0.00081884	538.8094311978742	38.423	0.21136	38.423	38.322	38.534	0					27	11	4	0	0	0	0.14578	1	12944	12944		71.877	13.096	1	361460			11754	6075;3126;11228	7581	7614	11943	11943					0.06781718368665679
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.8089599609375	2	538.808574	1075.60259	1.9235	0.0010364	-1.5635	-0.00084244	0.36003	0.00019399	538.8076119794324	38.625	0.71358	38.625	38.277	38.99	0					36	25	2	0	0	0	0.0055674	1	15142	15142		153.04	84.249	1	4882400			11755	6075;3126;11228	7581	7614	11944	11944					0.06781718368665679
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.8091430664062	2	538.808574	1075.60259	1.0075	0.00054286	0.82846	0.00044638	1.836	0.00098924	538.8090133350903	38.403	0.20956	38.403	38.32	38.53	0					23	10	3	0	0	0	0.067603	1	13720	13720		82.75	41.324	1	414230			11756	6075;3126;11228	7581	7614	11945	11945					0.06781718368665679
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8088989257812	2	538.808574	1075.60259	2.0405	0.0010995	-1.6206	-0.00087318	0.41995	0.00022627	538.8075349129642	38.585	0.87703	38.585	38.202	39.079	0					25	18	2	0	0	0	0.011893	1	15168	15168		145.16	62.915	1	4563900			11757	6075;3126;11228	7581	7614	11946	11946					0.06781718368665679
FVIPALLEH	9	Unmodified	_FVIPALLEH_					0	0	0			REV__TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant	REV__TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.8026733398438	2	519.80276	1037.59097	0.064614	3.3587E-05	0.60126	0.00031254	0.66588	0.00034612	519.8029725185177	11.573	0.13908	11.573	11.514	11.653	0					14	5	3	0	0	0	0.61124	1	2264	2264		13.775	5.544	1	289740	+		11758	14619	7582	7615	11947	11947					0.07367521345327077
FVIRDSSSY	9	Unmodified	_FVIRDSSSY_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2667236328125	2	537.266739	1072.51892	0.21231	0.00011407	1.0663	0.0005729	1.2786	0.00068697	537.2669530640038	32.901	0.167	32.901	32.814	32.981	0					8	4	2	0	0	0	0.048471	1	12129	12129		95.815	44.48	1	177470			11759	3737	7583	7616	11948	11948					-0.014434377990482972
FVITVINNG	9	Unmodified	_FVITVINNG_					0	0	0			REV__GARNL3|p.D301N|1|0.35|ENSG00000136895|chr9:127336155-127336155|G/A|missense_variant	REV__GARNL3|p.D301N|1|0.35|ENSG00000136895|chr9:127336155-127336155|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.77734375	2	488.776742	975.538931	-0.17968	-8.7824E-05	-2.0736	-0.0010135	-2.2533	-0.0011013	488.775384042249	28.114	0.20702	28.114	27.952	28.159	0					8	5	2	0	0	0	0.45358	1	9261	9261		37.159	1.9584	1	69662	+		11760	20687	7584	7617	11949	11949					0.05018357931578521
FVKDSGQVI	9	Unmodified	_FVKDSGQVI_					0	0	0		ENSG00000196935|ENST00000355086|SRGAP1;SRGAP1|p.F541Sfs*40|1|0.09|ENSG00000196935|chr12:64095145-64095145|T/-|frameshift_variant;SRGAP1|p.P856Lfs*3|1|0.56|ENSG00000196935|chr12:64127883-64127883|C/-|frameshift_variant	ENSG00000196935|ENST00000355086|SRGAP1	ENSG00000196935|ENST00000355086|SRGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.77423095703125	2	496.7742	991.533846	-0.76032	-0.00037771	0.84767	0.0004211	0.087345	4.3391E-05	496.77476108899566	41.051	0.25887	41.051	40.938	41.197	0					20	9	3	0	0	0	0.38666	1	16118	16118		42.864	2.0861	1	158910			11761	7404	7585	7618	11950	11950					0.0377405406896969
FVKGRCMLI	9	Unmodified	_FVKGRCMLI_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.801513671875	2	533.79864	1065.58273	1.1188	0.00059723	3.6016	0.0019225	4.7205	0.0025198	533.801041780009	38.771	0.11335	38.771	38.692	38.806	0					9	5	2	0	0	0	0.26904	1	13857	13857		53.351	3.9099	1	71043			11762	4248	7586	7619	11951	11951					0.05255927832695306
FVKGRCMLI	9	Unmodified	_FVKGRCMLI_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8008422851562	2	533.79864	1065.58273	3.3884	0.0018087	0.82284	0.00043923	4.2113	0.002248	533.7993574544624	38.959	0.20787	38.959	38.856	39.064	0					10	4	3	0	0	0	0.16524	1	15373	15373		65.803	17.888	1	257560			11763	4248	7586	7619	11952	11952					0.05255927832695306
FVKGTSTQIN	10	Unmodified	_FVKGTSTQIN_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7981567382812	2	547.795663	1093.57677	3.8329	0.0020996	0.25488	0.00013962	4.0877	0.0022392	547.7959579970287	42.54	0.53333	42.54	42.362	42.896	0					37	15	4	0	0	0	0.49411	1	16972	16972		45.972	3.5761	1	1416400	+		11764	14860	7587	7620	11953	11953					0.03372824126404339
FVKHSCGGK	9	Unmodified	_FVKHSCGGK_					0	0	0		ENST00000535011.6_1_7:128409877-128409916:+|nuORF	ENST00000535011.6_1_7:128409877-128409916:+|nuORF	ENST00000535011.6_1_7:128409877-128409916:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7484436035156	2	481.747462	961.480371	0.68889	0.00033187	1.0595	0.00051041	1.7484	0.00084228	481.7479950183609	17.309	0.40184	17.309	17.149	17.55	0					17	8	5	0	0	0	0.13267	1	5104	5104		71.877	0.49956	1	4123900			11765	10476	7588	7621	11954	11954					-0.001910219145429437
FVKNMMQM	8	Oxidation (M)	_FVKNMMQM(Oxidation (M))_		FVKNMMQM(0.999)		FVKNM(-33)M(-33)QM(33)	0	0	1			REV__GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	REV__GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7413330078125	2	522.737391	1043.46023	0.44309	0.00023162	-1.9805	-0.0010353	-1.5374	-0.00080364	522.7364666392883	27.419	0.42439	27.419	27.196	27.62	0					30	15	3	0	0	0	0.55361	1	8666	8666		54.765	12.29	3	398360	+		11766	15903	7589	7622	11955	11955		607			-0.059762769610188116
FVKQLAIVNPH	11	Unmodified	_FVKQLAIVNPH_					0	0	0			REV__nc|ENSG00000155111|Q9BWU1-2|CDK19	REV__nc|ENSG00000155111|Q9BWU1-2|CDK19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	633.3699951171875	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.888	1	54.888	54.388	55.388	0								0	0	0	0.45674	1	19836	19836		13.454	0	1		+		11767	15589	7590	7623	11956	11956					0.10741644593804267
FVKSAPIKL	9	Unmodified	_FVKSAPIKL_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.8817443847656	3	334.883061	1001.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.467	1	12.467	11.967	12.967	0								0	0	0	0.31838	1	2630	2630		31.53	3.6476	1		+		11768	14146	7591	7624	11957	11957					0.12660398242030624
FVLEGSSLLT	10	Unmodified	_FVLEGSSLLT_					0	0	0		ENST00000483291.1_1_22:26743758-26747244:+|nuORF;nc|ENSG00000100095|Q9BYH1-2|SEZ6L;nc|ENSG00000100095|Q9BYH1-3|SEZ6L;nc|ENSG00000100095|Q9BYH1-5|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L	ENST00000483291.1_1_22:26743758-26747244:+|nuORF	ENST00000483291.1_1_22:26743758-26747244:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2977905273438	2	533.294965	1064.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.571	1	26.571	26.071	27.071	0								0	0	0	0.41253	1	8092	8092		26.693	0.62953	1				11769	1970	7592	7625	11958	11958					0.04567190037619184
FVLFKYYG	8	Unmodified	_FVLFKYYG_					0	0	0			REV__WDFY4|p.S2492Y|1|0.3|ENSG00000128815|chr10:48900258-48900258|C/A|missense_variant	REV__WDFY4|p.S2492Y|1|0.3|ENSG00000128815|chr10:48900258-48900258|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7769775390625	2	518.778754	1035.54295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.982	1	39.982	39.482	40.482	0								0	0	0	1.7419	1	15234	15234		37.028	1.8278	1		+		11770	22287	7593	7626	11959	11959					0.0266044742527356
FVLFLFGG	8	Unmodified	_FVLFLFGG_					0	0	0		nc|ENSG00000212710|Q9HC47|CTAGE1	nc|ENSG00000212710|Q9HC47|CTAGE1	nc|ENSG00000212710|Q9HC47|CTAGE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.252685546875	2	450.254914	898.495276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.867	1	36.867	36.367	37.367	0								0	0	0	1.7419	1	12479	12479		33.493	3.6514	1				11771	11757	7594	7627	11960	11960					0.041967932250940976
FVLGPELGG	9	Unmodified	_FVLGPELGG_					0	0	0			REV__ENSG00000132518|ENST00000254854|GUCY2D	REV__ENSG00000132518|ENST00000254854|GUCY2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.7447509765625	2	444.744911	887.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.321	1	44.321	43.821	44.821	0								0	0	0	0.22106	1	14397	14397		47.916	1.9636	1		+		11772	14663	7595	7628	11961	11961					0.027029974944866808
FVLKEGVEY	9	Unmodified	_FVLKEGVEY_					0	0	0		nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2908325195312	2	542.289682	1082.56481	2.0405	0.0011065	0.63602	0.00034491	2.6765	0.0014514	542.2900361295854	38.485	0.30138	38.485	38.393	38.695	0					10	6	2	0	0	0	0.16002	1	15146	15146		66.429	7.6473	1	214610			11773	4453	7596	7629	11962	11962					0.026832073831883463
FVLPLLIVG	9	Unmodified	_FVLPLLIVG_					0	0	0		ENSG00000102195|ENST00000218316|GPR50;GPR50|p.P523Afs*8|1|0.18|ENSG00000102195|chrX:151181146-151181147|-/A|frameshift_variant	ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.21673583984375	3	324.21604	969.62629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.163	1	25.163	24.663	25.663	0								0	0	0	0.40224	1	7536	7536		10.265	0	1				11774	2158	7597	7630	11963	11963					0.14026183873147602
FVLVLFCV	8	Unmodified	_FVLVLFCV_					0	0	0			REV__ENST00000252818.4_1_19:18390759-18390948:-|nuORF	REV__ENST00000252818.4_1_19:18390759-18390948:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2717590332031	2	470.27225	938.529947	-0.59794	-0.0002812	0.12038	5.661E-05	-0.47757	-0.00022459	470.2721956990836	52.464	0.27286	52.464	52.345	52.618	0					34	17	3	0	0	0	0.77013	1	16087	16087		24.504	0	1	241150	+		11775	17970	7598	7631	11964	11964					0.058222930415240626
FVLVTHPS	8	Unmodified	_FVLVTHPS_					0	0	0		ENST00000461241.1_1_22:31518992-31523076:+|nuORF	ENST00000461241.1_1_22:31518992-31523076:+|nuORF	ENST00000461241.1_1_22:31518992-31523076:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2522277832031	2	450.252903	898.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.096	1	37.096	36.596	37.596	0								0	0	0	1.7419	1	14038	14038		54.765	2.4655	1				11776	9730	7599	7632	11965	11965					0.03794703731375648
FVLWAPAIL	9	Unmodified	_FVLWAPAIL_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3;nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1;ENSG00000180720|ENST00000682254|CHRM4	ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.310302734375	2	515.310221	1028.60589	1.4056	0.00072431	-2.0934	-0.0010788	-0.68782	-0.00035444	515.3089771181343	40.125	0.34834	40.125	40.021	40.369	0					22	13	2	0	0	0	0.35045	1	15818	15818		39.021	0	1	143170			11777	3828	7600	7633	11966	11966					0.0927301321332834
FVLWAPAIL	9	Unmodified	_FVLWAPAIL_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3;nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1;ENSG00000180720|ENST00000682254|CHRM4	ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3103637695312	2	515.310221	1028.60589	0.15331	7.9004E-05	-0.090506	-4.6639E-05	0.062808	3.2365E-05	515.3101389550962	40.172	0.3545	40.172	39.971	40.325	0					13	8	2	0	0	0	0.16524	1	15894	15894		49.211	6.8147	1	73896			11778	3828	7600	7633	11967	11967					0.0927301321332834
FVLWCLCSVY	10	Unmodified	_FVLWCLCSVY_					0	0	0		DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant;ENSG00000151240|ENST00000280886|DIP2C	DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.7959594726562	2	616.795763	1231.57697	0.28476	0.00017564	0.096042	5.9238E-05	0.38081	0.00023488	616.7957799799207	14.918	0.31656	14.918	14.813	15.13	0					11	6	3	0	0	0	0.64178	1	3986	3986		29.15	2.4566	1	1588100			11779	790	7601	7634	11968	11968					-0.02955215469637551
FVMLVMMIF	9	Oxidation (M)	_FVMLVM(Oxidation (M))MIF_		FVM(0.086)LVM(0.903)M(0.01)IF		FVM(-10)LVM(10)M(-19)IF	0	0	1		ENST00000544440.6_1_13:77625173-77629724:-|nuORF	ENST00000544440.6_1_13:77625173-77629724:-|nuORF	ENST00000544440.6_1_13:77625173-77629724:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.7965087890625	2	573.791635	1145.56872	3.3535	0.0019242	3.5381	0.0020301	6.8916	0.0039544	573.793791478036	44.148	0.19365	44.148	44.095	44.289	0					11	8	2	0	0	0	0.31222	1	17708	17708		49.211	6.3465	3	80206			11780	10564	7602	7635	11969	11969		422			0.0017551428938986646
FVNANGKLLP	10	Unmodified	_FVNANGKLLP_					0	0	0		ENST00000466201.1_1_10:15145619-15151814:-|nuORF	ENST00000466201.1_1_10:15145619-15151814:-|nuORF	ENST00000466201.1_1_10:15145619-15151814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.812744140625	2	536.811116	1071.60768	1.8545	0.0009955	-0.96486	-0.00051795	0.8896	0.00047755	536.8106079014536	45.887	0.1933	45.887	45.766	45.959	0					18	11	2	0	0	0	0.57532	1	17698	17698		37.159	2.9866	1	148050			11781	9785	7603	7636	11970	11970					0.07474022231281197
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.764404296875	2	566.76384	1131.51313	0.12737	7.2189E-05	0.92004	0.00052144	1.0474	0.00059363	566.7645280772701	24.101	0.23949	24.101	24.018	24.258	0					15	7	3	0	0	0	0.18416	1	7335	7335		63.534	26.375	1	151460			11782	3594	7604	7637	11971	11971					-0.0473685958236274
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.76416015625	2	566.76384	1131.51313	1.9316	0.0010948	-1.9115	-0.0010834	0.020143	1.1416E-05	566.7631308848236	24.352	0.36437	24.352	24.246	24.61	0					16	7	4	0	0	0	0.070005	1	8525	8525		88.177	38.735	1	1351900			11783	3594	7604	7637	11972	11972					-0.0473685958236274
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.7639770507812	2	566.76384	1131.51313	0.75354	0.00042708	-0.67902	-0.00038485	0.074516	4.2233E-05	566.7637200201218	24.181	0.19601	24.181	24.078	24.274	0					9	4	3	0	0	0	0.10915	1	7511	7511		77.318	30.861	1	191480			11784	3594	7604	7637	11973	11973					-0.0473685958236274
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.1782531738281	3	378.178319	1131.51313	-0.43951	-0.00016621	0.084086	3.1799E-05	-0.35542	-0.00013441	378.1784014956544	24.287	0.60807	24.287	24.179	24.787	0					23	12	3	0	0	0	0.35021	1	8366	8366		70.816	24.844	1	3488200			11785	3594	7604	7637	11974	11974					-0.0473685958236274
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.7640380859375	2	566.76384	1131.51313	1.6848	0.00095487	-1.422	-0.00080596	0.26274	0.00014891	566.763277111356	24.271	0.21762	24.271	24.213	24.43	0					14	4	5	0	0	0	0.070005	1	8364	8364		88.177	42.225	1	1168400			11786	3594	7604	7637	11975	11975					-0.0473685958236274
FVNNTRWH	8	Unmodified	_FVNNTRWH_					0	0	0			REV__ENST00000567631.1_1_16:11984978-11988885:-|nuORF	REV__ENST00000567631.1_1_16:11984978-11988885:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2689208984375	2	537.267407	1072.52026	3.3436	0.0017964	-0.067984	-3.6526E-05	3.2756	0.0017599	537.2673213974728	39.121	2.5636	39.121	38.055	40.619	0					169	56	4	0	0	0	0.46905	1	15322	15322		63.306	63.306	1	2285500	+		11787	20354	7605	7638	11976	11976					-0.013097589196149784
FVNVKASVQ	9	Unmodified	_FVNVKASVQ_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.1916198730469	3	331.190553	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.063	1	20.063	19.563	20.563	0								0	0	0	0.35899	1	6444	6444		17.468	0	1		+		11788	15204	7606	7639	11977	11977					0.054177603058633395
FVNYNVKSPI	10	Unmodified	_FVNYNVKSPI_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.8203735351562	2	590.821681	1179.62881	-0.10221	-6.0391E-05	-2.2896	-0.0013527	-2.3918	-0.0014131	590.8205162717779	32.393	0.2906	32.393	32.306	32.596	0					11	7	2	0	0	0	0.44292	1	12319	12319		51.528	1.9917	1	73182			11789	2421	7607	7640	11978	11978					0.046179875401321624
FVPCHPNLHL	10	Unmodified	_FVPCHPNLHL_					0	0	0		nc|ENSG00000145819|Q9UNA1|ARHGAP26	nc|ENSG00000145819|Q9UNA1|ARHGAP26	nc|ENSG00000145819|Q9UNA1|ARHGAP26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.8003540039062	2	588.802768	1175.59098	0.53091	0.0003126	-3.899	-0.0022957	-3.3681	-0.0019831	588.8006583363948	43.509	0.14227	43.509	43.432	43.575	0					13	8	2	0	0	0	0.52275	1	15064	15064		30.504	14.862	1	71523			11790	11569	7608	7641	11979	11979					0.01021198073681262
FVPDFPTL	8	Unmodified	_FVPDFPTL_					0	0	0			REV__ENSG00000140093|ENST00000261994|SERPINA10	REV__ENSG00000140093|ENST00000261994|SERPINA10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2455749511719	2	468.247286	934.48002	0.30934	0.00014485	-4.033	-0.0018884	-3.7236	-0.0017436	468.24507939136186	34.388	0.091839	34.388	34.334	34.426	0					4	2	2	0	0	0	0.75243	1	12812	12812		26.796	3.7536	1	41805	+		11791	15061	7609	7642	11980	11980					0.010158816372381807
FVPVANEL	8	Unmodified	_FVPVANEL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.74517822265625	2	444.744911	887.475269	0.59227	0.00026341	0.0056905	2.5308E-06	0.59796	0.00026594	444.74488297717215	44.576	0.23639	44.576	44.474	44.71	0					24	14	3	0	0	0	0.34985	1	16689	16689		76.847	24.547	1	125140			11792	6618	7610	7643	11981	11981					0.027029974944639434
FVPVANEL	8	Unmodified	_FVPVANEL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.74462890625	2	444.744911	887.475269	0.55019	0.00024469	-0.6747	-0.00030007	-0.12451	-5.5375E-05	444.74457160783356	44.585	0.24833	44.585	44.452	44.7	0					24	13	2	0	0	0	0.34985	1	17318	17318		76.847	16.553	1	330570			11793	6618	7610	7643	11982	11982					0.027029974944639434
FVPVANEL	8	Unmodified	_FVPVANEL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7452392578125	2	444.744911	887.475269	-0.47143	-0.00020967	0.72887	0.00032416	0.25744	0.0001145	444.74514419200176	44.526	0.28679	44.526	44.412	44.699	0					16	11	2	0	0	0	0.3961	1	17821	17821		71.296	17.944	1	99365			11794	6618	7610	7643	11983	11983					0.027029974944639434
FVQDVPAL	8	Unmodified	_FVQDVPAL_					0	0	0		nc|ENSG00000141161|Q8IWX7|UNC45B;ENSG00000141161|ENST00000394570|UNC45B	nc|ENSG00000141161|Q8IWX7|UNC45B	nc|ENSG00000141161|Q8IWX7|UNC45B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.744873046875	2	444.744911	887.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.252	1	44.252	43.752	44.752	0								0	0	0	1.7419	1	13876	13876		45.952	1.8352	1				11795	4431	7611	7644	11984	11984					0.027029974944639434
FVQGIFVEK	9	Unmodified	_FVQGIFVEK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.8006591796875	2	533.800217	1065.58588	2.2946	0.0012249	-0.85283	-0.00045524	1.4418	0.00076962	533.7997536590149	39.038	0.1489	39.038	38.948	39.097	0					14	5	3	0	0	0	0.076532	1	14845	14845		85.862	27.632	1	372030			11796	2983	7612	7645	11985	11985					0.055712174827021954
FVQGIFVEK	9	Unmodified	_FVQGIFVEK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8011474609375	2	533.800217	1065.58588	0.71313	0.00038067	1.2828	0.00068478	1.996	0.0010655	533.8008718756518	38.945	0.15903	38.945	38.839	38.998	0					8	3	3	0	0	0	0.13109	1	15362	15362		72.243	15.522	1	345720			11797	2983	7612	7645	11986	11986					0.055712174827021954
FVQGIFVEK	9	Unmodified	_FVQGIFVEK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8002319335938	2	533.800217	1065.58588	1.8136	0.00096811	-1.0712	-0.00057182	0.74239	0.00039629	533.799747999598	38.966	0.47635	38.966	38.824	39.301	0					22	10	4	0	0	0	0.037712	1	15355	15355		101.46	42.678	1	897730			11798	2983	7612	7645	11987	11987					0.055712174827021954
FVQVTPNQ	8	Unmodified	_FVQVTPNQ_					0	0	0			REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7452697753906	2	466.745442	931.476331	0.65831	0.00030726	-1.3316	-0.00062152	-0.67329	-0.00031425	466.7447249448538	40.543	0.27453	40.543	40.441	40.716	0					19	11	2	0	0	0	0.72381	1	16026	16026		30.504	2.4222	1	257240	+		11799	22034	7613	7646	11988	11988					0.007852118633763894
FVRRPDDGAL	10	Unmodified	_FVRRPDDGAL_					0	0	0		ENSG00000184163|ENST00000330388|C1QTNF12	ENSG00000184163|ENST00000330388|C1QTNF12	ENSG00000184163|ENST00000330388|C1QTNF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.3060913085938	2	573.306729	1144.59891	-1.4641	-0.00083935	0.39827	0.00022833	-1.0658	-0.00061102	573.306879911591	28.89	0.2313	28.89	28.78	29.012	0					8	5	2	0	0	0	0.47859	1	9673	9673		47.657	8.8512	1	126120			11800	7001	7614	7647	11989	11989					0.03239048594809901
FVSCAYICL	9	2 Carbamidomethyl (C)	_FVSC(Carbamidomethyl (C))AYIC(Carbamidomethyl (C))L_	FVSC(1)AYIC(1)L		FVSC(42)AYIC(42)L		0	2	0		ENST00000548432.5_1_12:82832322-82872800:+|nuORF	ENST00000548432.5_1_12:82832322-82872800:+|nuORF	ENST00000548432.5_1_12:82832322-82872800:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.1783447265625	3	378.177039	1131.50929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.125	1	24.125	23.625	24.625	0								0	0	0	0.2591	1	7077	7077		42.396	13.226	1				11801	10596	7615	7648	11990	11990	430;431				-0.0512066540043179
FVSCLPQL	8	Carbamidomethyl (C)	_FVSC(Carbamidomethyl (C))LPQL_	FVSC(1)LPQL		FVSC(58)LPQL		0	1	0		ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61906826-61907063:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2533874511719	2	482.252046	962.489538	0.074143	3.5756E-05	2.3841	0.0011497	2.4582	0.0011855	482.25324961857893	31.194	0.20104	31.194	31.115	31.316	0					11	8	2	0	0	0	0.52345	1	10006	10006		57.811	6.6186	1	109020			11802	10859	7616	7649	11991	11991	439				0.00679326651129486
FVSKFDLSN	9	Unmodified	_FVSKFDLSN_					0	0	0			REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF	REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.77294921875	2	528.771657	1055.52876	0.15228	8.0523E-05	1.0514	0.00055595	1.2037	0.00063647	528.7722202287008	34.537	0.19855	34.537	34.42	34.619	0					11	8	2	0	0	0	0.47038	1	11635	11635		35.618	0.41757	1	53375	+		11803	15796	7617	7650	11992	11992					0.003217502063534994
FVSRPLSH	8	Unmodified	_FVSRPLSH_					0	0	0			REV__ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	REV__ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7632141113281	2	471.761426	941.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.882	1	18.882	18.382	19.382	0								0	0	0	1.7419	1	4779	4779		15.642	2.6826	1		+		11804	15967	7618	7651	11993	11993					0.03520624337193112
FVSVLFLNQ	9	Unmodified	_FVSVLFLNQ_					0	0	0		ENST00000357308.8_1_2:69552779-69552845:-|nuORF	ENST00000357308.8_1_2:69552779-69552845:-|nuORF	ENST00000357308.8_1_2:69552779-69552845:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.800537109375	2	533.800217	1065.58588	1.7554	0.00093702	-0.74218	-0.00039618	1.0132	0.00054084	533.7996463866937	38.985	0.27667	38.985	38.919	39.196	0					20	9	3	0	0	0	0.24095	1	15322	15322		56.721	0.088808	1	484360			11805	8822	7619	7652	11994	11994					0.055712174827021954
FVTKGNASF	9	Unmodified	_FVTKGNASF_					0	0	0			REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7529296875	2	485.753267	969.491981	-1.2389	-0.0006018	0.64526	0.00031344	-0.59364	-0.00028836	485.75340305736603	36.026	0.27795	36.026	35.885	36.163	0					25	12	3	0	0	0	0.027316	1	12177	12177		111.65	5.2331	1	410720	+		11806	21916	7620	7653	11995	11995					0.006014983804220719
FVTKGNASF	9	Unmodified	_FVTKGNASF_					0	0	0			REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.75299072265625	2	485.753267	969.491981	0.83663	0.0004064	-0.77193	-0.00037497	0.064706	3.1431E-05	485.7525957888841	36.175	0.31564	36.175	36.013	36.329	0					16	6	5	0	0	0	0.027316	1	14020	14020		111.65	10.437	1	2867800	+		11807	21916	7620	7653	11996	11996					0.006014983804220719
FVTKGNASF	9	Unmodified	_FVTKGNASF_					0	0	0			REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7532958984375	2	485.753267	969.491981	2.5121	0.0012203	-2.1798	-0.0010588	0.33232	0.00016143	485.7518157119329	36.156	0.7607	36.156	35.752	36.513	0					32	15	6	0	0	0	0.018419	1	14035	14035		124.59	23.383	1	1566700	+		11808	21916	7620	7653	11997	11997					0.006014983804220719
FVTKPNSAL	9	Unmodified	_FVTKPNSAL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.77691650390625	2	488.776742	975.538931	0.76751	0.00037514	0.24206	0.00011831	1.0096	0.00049345	488.77641539827465	28.254	0.33684	28.254	28.004	28.341	0					15	8	3	0	0	0	0.12834	1	9959	9959		72.879	14.097	1	505250			11809	2021	7621	7654	11998	11998					0.05018357931567152
FVTLLLHK	8	Unmodified	_FVTLLLHK_					0	0	0			REV__tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	REV__tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7748718261719	2	485.807845	969.601138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.557	1	13.557	13.057	14.057	0								0	0	0	1.7419	1	3174	3174		14.664	0.88877	1		+		11810	21775	7622	7655	11999	11999					0.11512129070558785
FVTNTRAMV	9	Oxidation (M)	_FVTNTRAM(Oxidation (M))V_		FVTNTRAM(1)V		FVTNTRAM(66)V	0	0	1			REV__ENST00000475815.5_1_2:36779888-36779918:-|nuORF	REV__ENST00000475815.5_1_2:36779888-36779918:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7698364257812	2	527.771134	1053.52771	3.4728	0.0018328	-2.1933	-0.0011575	1.2795	0.0006753	527.768035137983	36.935	0.40973	36.935	36.744	37.154	0					17	8	3	0	0	0	0.16524	1	14397	14397		65.803	7.0212	1	369060	+		11811	19532	7623	7656	12000	12000		715			0.0030921256577585154
FVTPLKEAL	9	Unmodified	_FVTPLKEAL_					0	0	0		ENSG00000148229|ENST00000374171|POLE3	ENSG00000148229|ENST00000374171|POLE3	ENSG00000148229|ENST00000374171|POLE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.8698425292969	3	339.870821	1016.59063	-0.053228	-1.8091E-05	-3.9067	-0.0013278	-3.96	-0.0013459	339.86976051189623	14.375	0.10888	14.375	14.312	14.421	0					5	3	2	0	0	0	0.54267	1	3047	3047		27.882	3.3631	1	44520			11812	4816	7624	7657	12001	12001					0.08300101625468415
FVTQPVRVL	9	Unmodified	_FVTQPVRVL_					0	0	0		ENST00000368547.3_1_10:135176069-135176375:-|nuORF	ENST00000368547.3_1_10:135176069-135176375:-|nuORF	ENST00000368547.3_1_10:135176069-135176375:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8220825195312	2	529.821484	1057.62842	1.7343	0.00091885	-0.82948	-0.00043948	0.90478	0.00047937	529.8209724646961	38.472	0.37986	38.472	38.333	38.713	0					28	13	3	0	0	0	0.59802	1	15088	15088		21.96	1.9631	1	368730			11813	8928	7625	7658	12002	12002					0.10190612610949756
FVTSGSYWD	9	Unmodified	_FVTSGSYWD_					0	0	0		CFHR4|p.S63del|1|0.23|ENSG00000134365|chr1:196902547-196902549|CTT/-|inframe_deletion	CFHR4|p.S63del|1|0.23|ENSG00000134365|chr1:196902547-196902549|CTT/-|inframe_deletion	CFHR4|p.S63del|1|0.23|ENSG00000134365|chr1:196902547-196902549|CTT/-|inframe_deletion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2346801757812	2	531.232364	1060.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.351	1	51.351	50.851	51.851	0								0	0	0	0.28996	1	20106	20106		37.159	4.3467	1				11814	497	7626	7659	12003	12003					-0.0776310209876101
FVTSSHLQL	9	Unmodified	_FVTSSHLQL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2793579101562	2	516.279649	1030.54475	1.4607	0.00075412	-1.6861	-0.00087051	-0.22544	-0.00011639	516.2790691860246	37.422	0.20773	37.422	37.36	37.567	0					11	6	3	0	0	0	0.16806	1	14645	14645		65.465	7.2355	1	160770			11815	4489	7627	7660	12004	12004					0.030694564432451443
FVVIFITY	8	Unmodified	_FVVIFITY_					0	0	0		ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000198513|Q8WXF7-2|ATL1	ENSG00000198513|ENST00000358385|ATL1	ENSG00000198513|ENST00000358385|ATL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2909851074219	2	501.288954	1000.56336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.97	1	49.97	49.47	50.47	0								0	0	0	1.7419	1	15070	15070		20.482	0	1				11816	7570	7628	7661	12005	12005					0.06309618085083457
FVVIFITY	8	Unmodified	_FVVIFITY_					0	0	0		ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000198513|Q8WXF7-2|ATL1	ENSG00000198513|ENST00000358385|ATL1	ENSG00000198513|ENST00000358385|ATL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2905578613281	2	501.288954	1000.56336	2.9237	0.0014656	0.21985	0.00011021	3.1435	0.0015758	501.2889657505489	49.269	1.5544	49.269	49.108	50.662	0					213	79	4	0	0	0	0.77246	1	19509	19509		21.702	21.702	1	866740			11817	7570	7628	7661	12006	12006					0.06309618085083457
FVVMNVPF	8	Oxidation (M)	_FVVM(Oxidation (M))NVPF_		FVVM(1)NVPF		FVVM(75)NVPF	0	0	1			REV__ENSG00000140107|ENST00000361529|SLC25A47	REV__ENSG00000140107|ENST00000361529|SLC25A47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.754150390625	2	484.749139	967.483725	2.4791	0.0012018	-4.2395	-0.0020551	-1.7603	-0.00085332	484.7458474322832	35.052	0.71496	35.052	34.7	35.415	0					42	14	4	0	0	0	0.36926	1	13465	13465		74.517	21.58	1	1236400	+		11818	15062	7629	7662	12007	12007		572			-0.0013177186053781043
FVVRVNFVVGG	11	Unmodified	_FVVRVNFVVGG_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.2337951660156	3	398.232752	1191.67643	3.1606	0.0012587	-0.7355	-0.0002929	2.4251	0.00096575	398.23252172559	32.745	0.94297	32.745	32.59	33.533	0					40	19	4	0	0	0	0.6208	1	12360	12360		35.178	6.6015	1	4591600	+		11819	20134	7630	7663	12008	12008					0.08825686530985877
FVVVMPELL	9	Oxidation (M)	_FVVVM(Oxidation (M))PELL_		FVVVM(1)PELL		FVVVM(68)PELL	0	0	1			REV__tr|U7SZJ7|U7SZJ7_FUSNUGeneralsecretionpathwayproteinFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00777PE=3SV=1	REV__tr|U7SZJ7|U7SZJ7_FUSNUGeneralsecretionpathwayproteinFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00777PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8013916015625	2	531.798829	1061.5831	3.4167	0.001817	0.64907	0.00034518	4.0657	0.0021622	531.7993821611374	40.384	0.3731	40.384	40.205	40.578	0					20	8	3	0	0	0	0.14734	1	16015	16015		68.485	68.485	1	1562100	+		11820	22040	7631	7664	12009	12009		797			0.054776260335529514
FVYEQFQV	8	Unmodified	_FVYEQFQV_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2618408203125	2	530.260925	1058.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.135	1	39.135	38.635	39.635	0								0	0	0	1.7419	1	13969	13969		31.955	0.42505	1		+		11821	16976	7632	7665	12010	12010					-0.019616348223962632
FVYSFSPVAG	10	Unmodified	_FVYSFSPVAG_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2692260742188	2	537.26875	1072.52295	0.21499	0.00011551	0.075191	4.0398E-05	0.29018	0.00015591	537.2686473566455	39.276	1.3319	39.276	38.68	40.012	0					105	50	3	0	0	0	0.57532	1	15081	15081		37.159	3.2375	1	186180			11822	7338	7633	7666	12011	12011					-0.010413483053298478
FWAREVGP	8	Unmodified	_FWAREVGP_					0	0	0		ENST00000392263.6_2_2:202098244-202098831:+|nuORF	ENST00000392263.6_2_2:202098244-202098831:+|nuORF	ENST00000392263.6_2_2:202098244-202098831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2508544921875	2	481.248152	960.481751	0.68644	0.00033035	3.7551	0.0018071	4.4415	0.0021375	481.2504847978165	21.793	0.21507	21.793	21.708	21.924	0					11	4	3	0	0	0	0.70055	1	7307	7307		33.516	0.70317	1	521780			11823	9142	7634	7667	12012	12012					-7.064554142743873E-05
FWGAQLPRP	9	Unmodified	_FWGAQLPRP_					0	0	0		ENST00000590650.1_1_19:36235732-36236187:-|nuORF	ENST00000590650.1_1_19:36235732-36236187:-|nuORF	ENST00000590650.1_1_19:36235732-36236187:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2932739257812	2	536.290351	1070.56615	1.8373	0.00098533	2.6324	0.0014117	4.4697	0.002397	536.2911203161382	12.513	0.13234	12.513	12.469	12.601	0					6	3	2	0	0	0	0.5654	1	2849	2849		25.45	0.93098	1	115100			11824	10954	7635	7668	12013	12013					0.03368886262592241
FWGPLHPFI	9	Unmodified	_FWGPLHPFI_					0	0	0			REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF	REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3009033203125	2	557.297645	1112.58074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.653	1	42.653	42.153	43.153	0								0	0	0	0.28056	1	17036	17036		39.021	1.8624	1		+		11825	18053	7636	7669	12014	12014					0.02894958410752224
FWKNNRTR	8	Unmodified	_FWKNNRTR_					0	0	0			REV__ENSG00000174842|ENST00000370360|GLMN	REV__ENSG00000174842|ENST00000370360|GLMN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.3021850585938	2	561.301781	1120.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.022	1	32.022	31.522	32.522	0								0	0	0	1.7419	1	11092	11092		35.618	1.4457	1		+		11826	16587	7637	7670	12015	12015					0.033539053800723195
FWLLCSNAM	9	Unmodified	_FWLLCSNAM_					0	0	0			REV__ENST00000306156.7_1_2:46412536-46412620:+|nuORF	REV__ENST00000306156.7_1_2:46412536-46412620:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7517700195312	2	542.751356	1083.48816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.252	1	11.252	10.752	11.752	0								0	0	0	0.3304	1	2263	2263		29.15	2.3535	1		+		11827	18244	7638	7671	12016	12016					-0.050246307093175346
FWMKLSRF	8	Unmodified	_FWMKLSRF_					0	0	0			REV__nc|ENSG00000132437|P20711-4|DDC	REV__nc|ENSG00000132437|P20711-4|DDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.798828125	2	557.796955	1113.57936	1.8039	0.0010062	0.9556	0.00053303	2.7595	0.0015392	557.7973868092965	27.887	0.46981	27.887	27.792	28.262	0					21	11	4	0	0	0	0.37144	1	9784	9784		74.255	74.255	1	899780	+		11828	14658	7639	7672	12017	12017					0.027110010503520243
FWMLFYLG	8	Unmodified	_FWMLFYLG_					0	0	0			REV__ENST00000411991.5_1_2:103340290-103347510:-|nuORF	REV__ENST00000411991.5_1_2:103340290-103347510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7676391601562	2	538.767332	1075.52011	-0.20301	-0.00010938	0.21701	0.00011692	0.013994	7.5395E-06	538.7672237984949	18.334	0.082924	18.334	18.283	18.366	0					6	3	2	0	0	0	0.70073	1	4777	4777		33.493	3.1753	1	44382	+		11829	19008	7640	7673	12018	12018					-0.014628949638563427
FWNPPVEM	8	Unmodified	_FWNPPVEM_					0	0	0		ENST00000383678.6_1_3:112718384-112719759:+|nuORF	ENST00000383678.6_1_3:112718384-112719759:+|nuORF	ENST00000383678.6_1_3:112718384-112719759:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2386779785156	2	510.236396	1018.45824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.07	1	38.07	37.57	38.57	0								0	0	0	1.7419	1	14920	14920		50.025	0.58299	1				11830	9130	7641	7674	12019	12019					-0.05025246382979276
FWPVGIAAF	9	Unmodified	_FWPVGIAAF_					0	0	0		nc|ENSG00000142046|Q6ZNR0-4|TMEM91;nc|ENSG00000142046|Q6ZNR0-3|TMEM91;nc|ENSG00000142046|Q6ZNR0-5|TMEM91;nc|ENSG00000142046|Q6ZNR0-2|TMEM91;ENSG00000142046|ENST00000392002|TMEM91	nc|ENSG00000142046|Q6ZNR0-4|TMEM91	nc|ENSG00000142046|Q6ZNR0-4|TMEM91	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.27020263671875	2	504.271096	1006.52764	1.2008	0.00060551	-0.63753	-0.00032149	0.56324	0.00028402	504.27059115961424	38.227	0.38242	38.227	38.111	38.493	0					14	8	2	0	0	0	0.43174	1	15019	15019		39.021	3.8208	1	83667			11831	4481	7642	7675	12020	12020					0.02463580628091222
FWSSSVSIL	9	Unmodified	_FWSSSVSIL_					0	0	0			REV__ENST00000301740.12_1_16:2820975-2821305:+|nuORF	REV__ENST00000301740.12_1_16:2820975-2821305:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2696533203125	2	513.26875	1024.52295	3.1604	0.0016221	0.43488	0.00022321	3.5952	0.0018453	513.2689589499449	45.471	0.17909	45.471	45.387	45.566	0					12	6	2	0	0	0	0.43426	1	18195	18195		38.806	1.647	1	200850	+		11832	18206	7643	7676	12021	12021					0.011666516946661432
FWWSFQKAM	9	Unmodified	_FWWSFQKAM_					0	0	0			REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	615.7890625	2	615.791869	1229.56919	-2.0244	-0.0012466	-2.4217	-0.0014912	-4.4461	-0.0027378	615.790566710409	19.583	0.094997	19.583	19.522	19.617	0					4	2	2	0	0	0	0.53083	1	5350	5350		29.15	1.0681	1	52270	+		11833	18529	7644	7677	12022	12022					-0.036416066748870435
FWYLRWRQHRG	11	Unmodified	_FWYLRWRQHRG_					0	0	0		ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENSG00000126460|ENST00000246794|PRRG2	ENST00000597121.5_1_19:50086773-50093643:+|nuORF	ENST00000597121.5_1_19:50086773-50093643:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.9517211914062	3	535.616371	1603.82728	1.8137	0.00097143	-0.82246	-0.00044052	0.99121	0.00053091	535.9501919537041	40.43	0.90571	40.43	39.856	40.761	0					53	35	2	0	0	0	0.88894	1	15926	15926		1.523	0.10423	1	148380			11834	3476	7645	7678	12023	12023					0.04952265962333513
FYALIPCLL	9	Unmodified	_FYALIPCLL_					0	0	0		ENSG00000174564|ENST00000329582|IL20RB	ENSG00000174564|ENST00000329582|IL20RB	ENSG00000174564|ENST00000329582|IL20RB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.796875	2	526.796089	1051.57763	-1.2139	-0.00063948	2.7507	0.0014491	1.5368	0.00080959	526.7973887236127	31.162	0.24762	31.162	31.095	31.342	0					13	7	3	0	0	0	0.43174	1	10704	10704		39.021	3.4032	1	179240			11835	6497	7646	7679	12024	12024					0.05389947241724258
FYCRELVAF	9	Carbamidomethyl (C)	_FYC(Carbamidomethyl (C))RELVAF_	FYC(1)RELVAF		FYC(66)RELVAF		0	1	0			REV__ENST00000280330.12_1_5:10227736-10236644:-|nuORF	REV__ENST00000280330.12_1_5:10227736-10236644:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.7958374023438	2	602.794609	1203.57467	2.0161	0.0012153	-0.013774	-8.3029E-06	2.0024	0.001207	602.7945366345169	34.726	0.75818	34.726	34.572	35.33	0					47	15	6	0	0	0	0.16002	1	13323	13323		66.429	14.13	1	15840000	+		11836	18126	7647	7680	12025	12025	641				-0.01897927883101147
FYCRELVAF	9	Carbamidomethyl (C)	_FYC(Carbamidomethyl (C))RELVAF_	FYC(1)RELVAF		FYC(57)RELVAF		0	1	0			REV__ENST00000280330.12_1_5:10227736-10236644:-|nuORF	REV__ENST00000280330.12_1_5:10227736-10236644:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.79638671875	2	602.794609	1203.57467	3.0605	0.0018448	-0.47087	-0.00028384	2.5896	0.001561	602.7942055100149	34.71	0.65771	34.71	34.555	35.213	0					38	13	5	0	0	0	0.24095	1	13320	13320		56.721	15.943	1	6935200	+		11837	18126	7647	7680	12026	12026	641				-0.01897927883101147
FYDSVLAVK	9	Unmodified	_FYDSVLAVK_					0	0	0			REV__ENST00000435830.6_1_3:37354991-37360805:+|nuORF	REV__ENST00000435830.6_1_3:37354991-37360805:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.285400390625	2	521.2844	1040.55425	0.075468	3.934E-05	1.7454	0.00090983	1.8208	0.00094917	521.2852885784848	11.172	0.060589	11.172	11.132	11.193	0					6	3	2	0	0	0	0.61124	1	2133	2133		15.642	3.435	1	63159	+		11838	19202	7648	7681	12027	12027					0.035592247287468126
FYEEWGADSG	10	Unmodified	_FYEEWGADSG_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.73095703125	2	580.730186	1159.44582	-0.031289	-1.8171E-05	1.2725	0.00073897	1.2412	0.0007208	580.7309320255195	39.504	0.18991	39.504	39.391	39.581	0					10	7	2	0	0	0	0.69166	1	15048	15048		23.042	3.939	1	65917	+		11839	13599	7649	7682	12028	12028					-0.12752611312339468
FYFGPRGK	8	Unmodified	_FYFGPRGK_					0	0	0			REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2585144042969	2	486.25852	970.502486	-0.6859	-0.00033352	1.3787	0.00067042	0.69283	0.00033689	486.2592421585817	11.981	2.797	11.981	11.785	14.582	0					134	65	3	0	0	0	0.68754	1	2708	2708		35.201	35.201	1	30529000	+		11840	17284	7650	7683	12029	12029					0.016055258255278204
FYFVRRHTWHR	11	Unmodified	_FYFVRRHTWHR_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.61669921875	3	535.616371	1603.82728	2.202	0.0011794	-0.63309	-0.00033909	1.5689	0.00084034	535.6160754966188	40.563	1.1695	40.563	39.85	41.019	0					64	44	2	0	0	0	0.88894	1	15474	15474		1.523	1.523	1	185650	+		11841	18181	7651	7684	12030	12030					0.049522659623562504
FYFVRRHTWHR	11	Unmodified	_FYFVRRHTWHR_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.6161499023438	3	535.616371	1603.82728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.309	1	40.309	39.809	40.809	0								0	0	0	0.45674	1	14332	14332		13.508	5.4736	1		+		11842	18181	7651	7684	12031	12031					0.049522659623562504
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.8084106445312	2	540.808042	1079.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.782	1	41.782	41.282	42.282	0								0	0	0	0.18645	1	13357	13357		52.937	15.778	1				11843	2396	7652	7685	12032	12032					0.06491503999745873
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.808349609375	2	540.808042	1079.60153	0.28191	0.00015246	0.46538	0.00025168	0.74729	0.00040414	540.8083917413335	42.074	0.18537	42.074	41.999	42.184	0					19	9	3	0	0	0	0.07136	1	15951	15951		87.696	21.893	1	223800			11844	2396	7652	7685	12033	12033					0.06491503999745873
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.8082275390625	2	540.808042	1079.60153	0.30954	0.0001674	0.72675	0.00039303	1.0363	0.00056043	541.3101599183217	42.062	0.20343	42.062	41.947	42.15	0					15	9	2	0	0	0	0.12239	1	16517	16517		74.255	15.473	1	158970			11845	2396	7652	7685	12034	12034					0.06491503999745873
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.7980346679688	2	581.798206	1161.58186	-0.014407	-8.3819E-06	1.1346	0.00066011	1.1202	0.00065173	581.7980206012132	39.793	0.14242	39.793	39.738	39.88	0					10	5	3	0	0	0	0.42902	1	15163	15163		39.253	7.298	1	110320			11846	7430	7653	7686	12035	12035					0.007531279889917641
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.7978515625	2	581.798206	1161.58186	1.4515	0.00084448	-1.4113	-0.00082111	0.040178	2.3375E-05	581.7972585166161	39.766	0.12859	39.766	39.703	39.832	0					8	4	2	0	0	0	0.18416	1	15644	15644		63.534	22.961	1	160130			11847	7430	7653	7686	12036	12036					0.007531279889917641
FYIYKGVRKRL	11	Unmodified	_FYIYKGVRKRL_					0	0	0		nc|ENSG00000140153|Q8TBZ3-4|WDR20;nc|ENSG00000140153|Q8TBZ3-5|WDR20;nc|ENSG00000140153|Q8TBZ3-6|WDR20	nc|ENSG00000140153|Q8TBZ3-4|WDR20	nc|ENSG00000140153|Q8TBZ3-4|WDR20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.6274108886719	3	481.625873	1441.85579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.104	1	18.104	17.604	18.604	0								0	0	0	0.45674	1	4658	4658		14.086	1.1285	1				11848	11551	7654	7687	12037	12037					0.15253570818936169
FYLATQNPIA	10	Unmodified	_FYLATQNPIA_					0	0	0			REV__nc|ENSG00000211750|A0A075B6N3|TRBV24-1	REV__nc|ENSG00000211750|A0A075B6N3|TRBV24-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.3016357421875	2	569.300581	1136.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.722	1	44.722	44.222	45.222	0								0	0	0	0.29806	1	17918	17918		51.193	1.1592	1		+		11849	21200	7655	7688	12038	12038					0.02378012131748619
FYLPNILK	8	Unmodified	_FYLPNILK_					0	0	0		ENST00000375110.6_1_10:32594803-32667680:-|nuORF	ENST00000375110.6_1_10:32594803-32667680:-|nuORF	ENST00000375110.6_1_10:32594803-32667680:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2981262207031	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.982	1	23.982	23.482	24.482	0								0	0	0	1.7419	1	7277	7277		35.201	1.6851	1				11850	9024	7656	7689	12039	12039					0.0821242283365109
FYMCVNVLF	9	Unmodified	_FYMCVNVLF_					0	0	0		ENST00000531768.1_1_11:77402049-77404650:-|nuORF	ENST00000531768.1_1_11:77402049-77404650:-|nuORF	ENST00000531768.1_1_11:77402049-77404650:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.26904296875	2	568.269381	1134.52421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.907	1	47.907	47.407	48.407	0								0	0	0	0.15451	1	19076	19076		62.978	20.504	1				11851	10442	7657	7690	12040	12040					-0.03767173532446577
FYMPTHLRC	9	Unmodified	_FYMPTHLRC_					0	0	0			REV__ENSG00000141194|ENST00000268912|OR4D1	REV__ENSG00000141194|ENST00000268912|OR4D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	584.2745361328125	2	584.275529	1166.53651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.4	1	26.4	25.9	26.9	0								0	0	0	0.34228	1	8019	8019		26.796	0.10319	1		+		11852	15105	7658	7691	12041	12041					-0.04010137069394659
FYNDRASF	8	Unmodified	_FYNDRASF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.23443603515625	2	510.232699	1018.45084	3.0486	0.0015555	0.19633	0.00010017	3.245	0.0016557	510.23305076122773	32.648	1.2964	32.648	32.387	33.684	0					73	26	6	0	0	0	0.54629	1	12316	12316		55.504	7.5886	1	24045000			11853	3298;4941	7659	7692	12042	12042					-0.05764262659056385
FYPAFSLAGL	10	Unmodified	_FYPAFSLAGL_					0	0	0			REV__ENST00000329627.11_2_22:18568015-18571019:+|nuORF	REV__ENST00000329627.11_2_22:18568015-18571019:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.2865600585938	2	543.286943	1084.55933	-1.4907	-0.00080987	-0.22133	-0.00012024	-1.712	-0.00093012	543.2866525825249	38.174	0.22506	38.174	38.113	38.338	0					20	11	3	0	0	0	0.64162	1	13653	13653		31.955	4.0726	1	163460	+		11854	18373	7660	7693	12043	12043					0.020435285913663392
FYQYLEEI	8	Unmodified	_FYQYLEEI_					0	0	0		tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8475036621094	3	368.846452	1103.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.513	1	52.513	52.013	53.013	0								0	0	0	1.7419	1	18617	18617		21.96	0	1				11855	22565	7661	7694	12044	12044					-0.03009071887800019
FYRTASELL	9	Unmodified	_FYRTASELL_					0	0	0		ENSG00000145700|ENST00000506364|ANKRD31;nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENST00000504022.1_1_5:74434805-74464953:-|nuORF	ENSG00000145700|ENST00000506364|ANKRD31	ENSG00000145700|ENST00000506364|ANKRD31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2933959960938	2	550.292756	1098.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.153	1	12.153	11.653	12.653	0								0	0	0	0.27025	1	2522	2522		40.778	5.1599	1				11856	4683	7662	7695	12045	12045					0.025617256147143053
FYSEFKMF	8	Unmodified	_FYSEFKMF_					0	0	0		ENST00000462992.1_1_1:171292253-171302174:+|nuORF	ENST00000462992.1_1_1:171292253-171302174:+|nuORF	ENST00000462992.1_1_1:171292253-171302174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7921752929688	2	549.751879	1097.4892	0.22351	0.00012288	-1.9535	-0.0010739	-1.73	-0.00095107	549.7510208127504	13.559	0.24252	13.559	13.493	13.735	0					6	5	2	0	0	0	0.79882	1	3354	3354		19.36	1.995	1	62633			11857	9753	7663	7696	12046	12046					-0.055640930687332
FYTEHPSVH	9	Unmodified	_FYTEHPSVH_					0	0	0			REV__nc|ENSG00000244687|Q13404-1|UBE2V1	REV__nc|ENSG00000244687|Q13404-1|UBE2V1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7594604492188	2	558.759081	1115.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.521	1	12.521	12.021	13.021	0								0	0	0	0.39312	1	2386	2386		12.959	4.7241	1		+		11858	17684	7664	7697	12047	12047					-0.049523045962587275
FYTHDICIC	9	Unmodified	_FYTHDICIC_					0	0	0		CABIN1|p.M1079T|1|0.11|ENSG00000099991|chr22:24085124-24085124|T/C|missense_variant	CABIN1|p.M1079T|1|0.11|ENSG00000099991|chr22:24085124-24085124|T/C|missense_variant	CABIN1|p.M1079T|1|0.11|ENSG00000099991|chr22:24085124-24085124|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7410888671875	2	557.738445	1113.46234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.562	1	12.562	12.062	13.062	0								0	0	0	0.31623	1	2857	2857		31.955	2.7848	1				11859	342	7665	7698	12048	12048					-0.08985524951572188
FYTVIPHNF	9	Unmodified	_FYTVIPHNF_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2907104492188	2	569.290017	1136.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.89	1	45.89	45.39	46.39	0								0	0	0	0.14211	1	18384	18384		64.207	14.766	1				11860	1196	7666	7699	12049	12049					0.0026604682288962067
FYVDVTRSL	9	Unmodified	_FYVDVTRSL_					0	0	0			REV__ENSG00000149571|ENST00000525144|KIRREL3	REV__ENSG00000149571|ENST00000525144|KIRREL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.1981201171875	3	367.197596	1098.57096	0.3623	0.00013304	-0.57934	-0.00021273	-0.21704	-7.9695E-05	367.1973434283263	31.454	0.3744	31.454	31.319	31.694	0					28	9	5	0	0	0	0.57706	1	10802	10802		24.519	24.519	1	2368300	+		11861	15428	7667	7700	12050	12050					0.025617256147143053
FYVKWADD	8	Unmodified	_FYVKWADD_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2468872070312	2	522.245275	1042.476	-0.087626	-4.5762E-05	3.3005	0.0017237	3.2129	0.0016779	522.2471196165598	13.322	0.24716	13.322	13.129	13.376	0					7	5	2	0	0	0	0.7914	1	3230	3230		14.664	0.88877	1	280700	+		11862	17420	7668	7701	12051	12051					-0.043542078564769326
GAAAAALK	8	Unmodified	_GAAAAALK_					0	0	0			REV__ENST00000575331.1_1_17:7344165-7344471:+|nuORF	REV__ENST00000575331.1_1_17:7344165-7344471:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.70550537109375	2	336.705589	671.396624	0.53432	0.00017991	-0.60375	-0.00020329	-0.069431	-2.3378E-05	336.705381297834	16.938	0.21065	16.938	16.785	16.996	0					7	4	2	0	0	0	0.68754	1	4953	4953		35.201	6.9464	1	140830	+		11863	20410	7669	7702	12052	12052					0.04778189980049774
GAAADQGGVVR	11	Unmodified	_GAAADQGGVVR_					0	0	0			REV__ENSG00000189099|ENST00000455694|PRSS48	REV__ENSG00000189099|ENST00000455694|PRSS48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.8290710449219	2	500.762155	999.509757	-0.6295	-0.00031523	0.79499	0.0003981	0.16549	8.2872E-05	500.7621537146388	17.12	0.2202	17.12	17.039	17.259	0					7	4	2	0	0	0	0.44903	1	4932	4932		47.96	0.30219	1	58639	+		11864	17211	7670	7703	12053	12053					0.00998213635295997
GAAAFIYEK	9	Unmodified	_GAAAFIYEK_					0	0	0		ENST00000481305.1_1_7:150500415-150501953:+|nuORF;ENST00000475007.5_1_7:150500316-150501569:+|nuORF;ENSG00000002933|ENST00000004103|TMEM176A	ENST00000481305.1_1_7:150500415-150501953:+|nuORF	ENST00000481305.1_1_7:150500415-150501953:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2554931640625	2	485.255643	968.496732	0.84696	0.00041099	-3.6748	-0.0017832	-2.8279	-0.0013722	485.2536063498514	32.565	0.51935	32.565	32.304	32.823	0					15	10	2	0	0	0	0.10915	1	12305	12305		77.318	18.536	1	302250			11865	932	7671	7704	12054	12054					0.011223825231809315
GAAAHLPK	8	Unmodified	_GAAAHLPK_					0	0	0		ENST00000608055.1_1_11:128628003-128638319:+|nuORF;ENSG00000151702|ENST00000527786|FLI1	ENST00000608055.1_1_11:128628003-128638319:+|nuORF	ENST00000608055.1_1_11:128628003-128638319:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.7243347167969	2	382.724313	763.434072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.801	1	12.801	12.301	13.301	0								0	0	0	1.7419	1	2969	2969		21.702	0	1				11866	4980	7672	7705	12055	12055					0.042892812456557294
GAAALRVP	8	Unmodified	_GAAALRVP_					0	0	0			REV__ENST00000379692.8_1_4:121993476-121993653:-|nuORF	REV__ENST00000379692.8_1_4:121993476-121993653:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.73236083984375	2	377.732138	753.449723	-1.097	-0.00041437	2.093	0.00079058	0.99598	0.00037621	377.7328279860777	13.479	0.062823	13.479	13.438	13.501	0					5	3	2	0	0	0	0.79176	1	2786	2786		21.702	0	1	45359	+		11867	18759	7673	7706	12056	12056					0.06313567762708772
GAAEKAKK	8	Unmodified	_GAAEKAKK_					0	0	0			REV__INCENP|p.A786V|1|0.43|ENSG00000149503|chr11:62148812-62148812|C/T|missense_variant	REV__INCENP|p.A786V|1|0.43|ENSG00000149503|chr11:62148812-62148812|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.7425842285156	2	401.742702	801.470852	-0.097469	-3.9157E-05	-0.30024	-0.00012062	-0.39771	-0.00015978	401.74271731713776	15.708	0.13765	15.708	15.642	15.78	0					9	6	2	0	0	0	0.65276	1	3459	3459		40.573	1.7665	1	147600	+		11868	15426	7674	7707	12057	12057					0.062175330715604105
GAAEPPVRAC	10	Carbamidomethyl (C)	_GAAEPPVRAC(Carbamidomethyl (C))_	GAAEPPVRAC(1)		GAAEPPVRAC(41)		0	1	0			REV__TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant	REV__TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2542724609375	2	514.253108	1026.49166	0.020609	1.0598E-05	2.1691	0.0011155	2.1897	0.0011261	514.2543023784079	14.976	0.21781	14.976	14.851	15.068	0					11	5	3	0	0	0	0.54197	1	3776	3776		40.778	7.9657	1	1631000	+		11869	22250	7675	7708	12058	12058	748				-0.020522446110817327
GAAFLQIPAE	10	Unmodified	_GAAFLQIPAE_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENSG00000283528|ENST00000636941|TCAF2C;nc|ENSG00000170379|A6NFQ2-3|TCAF2;nc|ENSG00000170379|A6NFQ2-2|TCAF2;TCAF2|p.A897Sfs*3|1|0.09|ENSG00000170379|chr7:143727595-143727596|-/TCAA|frameshift_variant;ENSG00000170379|ENST00000684770|TCAF2	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7740478515625	2	508.7742	1015.53385	-0.02122	-1.0796E-05	-0.15673	-7.9739E-05	-0.17795	-9.0535E-05	508.77415922340333	30.327	0.56681	30.327	29.999	30.566	0					29	13	3	0	0	0	0.52707	1	10893	10893		42.396	5.237	1	314090			11870	7559	7676	7709	12059	12059					0.02670054068948957
GAAGLGPLAQQ	11	Unmodified	_GAAGLGPLAQQ_					0	0	0		ENST00000601780.5_1_19:50985512-50985971:+|nuORF	ENST00000601780.5_1_19:50985512-50985971:+|nuORF	ENST00000601780.5_1_19:50985512-50985971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	328.1820983886719	3	328.182058	981.524344	0.3895	0.00012783	-0.57774	-0.0001896	-0.18824	-6.1776E-05	328.1819630374455	15.745	0.16825	15.745	15.634	15.803	0					5	3	2	0	0	0	0.59204	1	4379	4379		37.508	1.0614	1	86681			11871	11037	7677	7710	12060	12060					0.03284285783411178
GAAGPVCSK	9	Unmodified	_GAAGPVCSK_					0	0	0		ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.1994934082031	2	395.199813	788.385073	0.58018	0.00022929	-0.64207	-0.00025374	-0.061887	-2.4458E-05	395.1995520501131	16.175	0.16188	16.175	16.079	16.241	0					12	7	2	0	0	0	0.25716	1	3630	3630		54.776	12.302	1	71684			11872	9196	7678	7711	12061	12061					-0.017583751056008623
GAAGPVCSK	9	Unmodified	_GAAGPVCSK_					0	0	0		ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.19976806640625	2	395.199813	788.385073	0.90232	0.0003566	-1.5081	-0.000596	-0.60577	-0.0002394	395.1993929654973	16.456	0.35291	16.456	16.362	16.715	0					18	8	3	0	0	0	0.19605	1	4457	4457		62.107	14.192	1	1254800			11873	9196	7678	7711	12062	12062					-0.017583751056008623
GAAGPVCSK	9	Unmodified	_GAAGPVCSK_					0	0	0		ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.19976806640625	2	395.199813	788.385073	0.10695	4.2267E-05	-0.59056	-0.00023339	-0.48361	-0.00019112	395.1997416316901	16.426	0.31623	16.426	16.331	16.647	0					12	6	3	0	0	0	0.24095	1	4709	4709		56.721	9.0637	1	344820			11874	9196	7678	7711	12063	12063					-0.017583751056008623
GAAGPVCSK	9	Unmodified	_GAAGPVCSK_					0	0	0		ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.19964599609375	2	395.199813	788.385073	-0.16005	-6.3254E-05	-0.24213	-9.5691E-05	-0.40219	-0.00015894	395.19984413594665	16.2	0.22522	16.2	16.124	16.349	0					11	6	2	0	0	0	0.24095	1	3798	3798		56.721	7.5103	1	103830			11875	9196	7678	7711	12064	12064					-0.017583751056008623
GAAGPVCSK	9	Unmodified	_GAAGPVCSK_					0	0	0		ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.1996154785156	2	395.199813	788.385073	-0.65004	-0.0002569	-0.0070922	-2.8028E-06	-0.65713	-0.0002597	395.1998943125287	16.409	0.31723	16.409	16.3	16.617	0					17	6	4	0	0	0	0.13267	1	4525	4525		71.877	15.156	1	870580			11876	9196	7678	7711	12065	12065					-0.017583751056008623
GAAGPVCSK	9	Unmodified	_GAAGPVCSK_					0	0	0		ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.1997375488281	2	395.199813	788.385073	0.41159	0.00016266	-1.0006	-0.00039545	-0.58905	-0.00023279	395.1995711303935	16.392	0.36727	16.392	16.283	16.65	0					14	7	3	0	0	0	0.07136	1	4541	4541		87.696	10.922	1	1164700			11877	9196	7678	7711	12066	12066					-0.017583751056008623
GAAGQMVVTRP	11	Unmodified	_GAAGQMVVTRP_					0	0	0			REV__NLRP12|p.V730*|2|0.38|ENSG00000142405|chr19:53807550-53807550|C/-|frameshift_variant	REV__NLRP12|p.V730*|2|0.38|ENSG00000142405|chr19:53807550-53807550|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8622741699219	3	362.862331	1085.56516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.923	1	12.923	12.423	13.423	0								0	0	0	0.41946	1	2825	2825		32.751	3.1998	1		+		11878	15150	7679	7712	12067	12067					0.025803038314052174
GAAGRPLEL	9	Unmodified	_GAAGRPLEL_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.25335693359375	2	442.253434	882.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.036	1	31.036	30.536	31.536	0								0	0	0	0.17378	1	9942	9942		54.776	5.5655	1				11879	3194	7680	7713	12068	12068					0.046369181002773985
GAAGRPLEL	9	Unmodified	_GAAGRPLEL_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.25341796875	2	442.253434	882.492316	0.57427	0.00025397	-0.9419	-0.00041656	-0.36764	-0.00016259	442.2529497292934	31.32	0.29412	31.32	31.169	31.463	0					17	7	3	0	0	0	0.19605	1	11374	11374		62.107	19.711	1	303090			11880	3194	7680	7713	12069	12069					0.046369181002773985
GAAGRPLEL	9	Unmodified	_GAAGRPLEL_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2530822753906	2	442.253434	882.492316	-1.1201	-0.00049537	0.24237	0.00010719	-0.87773	-0.00038818	442.25372977641695	31.061	0.22095	31.061	30.98	31.201	0					14	8	2	0	0	0	0.24095	1	10253	10253		56.721	10.769	1	125010			11881	3194	7680	7713	12070	12070					0.046369181002773985
GAAGRPLEL	9	Unmodified	_GAAGRPLEL_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2532958984375	2	442.253434	882.492316	-0.52909	-0.00023399	0.16102	7.1209E-05	-0.36807	-0.00016278	442.25352169559466	31.036	0.1855	31.036	30.99	31.175	0					9	5	2	0	0	0	0.51991	1	10651	10651		30.318	1.1682	1	84432			11882	3194	7680	7713	12071	12071					0.046369181002773985
GAAGRPLEL	9	Unmodified	_GAAGRPLEL_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.25299072265625	2	442.253434	882.492316	0.74247	0.00032836	-1.0426	-0.0004611	-0.30014	-0.00013274	442.25292399551347	31.267	0.36105	31.267	31.11	31.471	0					14	7	3	0	0	0	0.13267	1	11682	11682		71.877	27.761	1	520500			11883	3194	7680	7713	12072	12072					0.046369181002773985
GAAGVHFIY	9	Unmodified	_GAAGVHFIY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.74273681640625	2	467.742702	933.470852	-0.43542	-0.00020367	-0.23118	-0.00010813	-0.6666	-0.0003118	467.74256906587686	39.261	0.27973	39.261	39.159	39.439	0					44	16	4	0	0	0	0.21025	1	12746	12746		60.404	25.203	1	532890			11884	6185	7681	7714	12073	12073					0.0014553307156575102
GAAGVHFIY	9	Unmodified	_GAAGVHFIY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7420959472656	2	467.742702	933.470852	-0.64965	-0.00030387	0.17484	8.1781E-05	-0.47481	-0.00022209	467.74275879861545	39.578	0.68052	39.578	39.477	40.158	0					58	26	4	0	0	0	0.43174	1	15047	15047		39.021	9.18	1	3554200			11885	6185	7681	7714	12074	12074					0.0014553307156575102
GAAGVHFIY	9	Unmodified	_GAAGVHFIY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.74273681640625	2	467.742702	933.470852	-1.0526	-0.00049233	0.77076	0.00036052	-0.2818	-0.00013181	467.7430121191004	39.353	0.42445	39.353	39.242	39.667	0					57	23	4	0	0	0	0.21025	1	13213	13213		60.404	13.637	1	673110			11886	6185	7681	7714	12075	12075					0.0014553307156575102
GAAGVHFIY	9	Unmodified	_GAAGVHFIY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7423095703125	2	467.742702	933.470852	-1.1099	-0.00051913	0.63574	0.00029736	-0.47412	-0.00022177	467.74290599186634	39.535	0.19598	39.535	39.476	39.672	0					11	7	2	0	0	0	0.43174	1	15545	15545		39.021	0	1	127890			11887	6185	7681	7714	12076	12076					0.0014553307156575102
GAAGVHFIY	9	Unmodified	_GAAGVHFIY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.743408203125	2	467.742702	933.470852	-0.72302	-0.00033819	0.98401	0.00046026	0.26099	0.00012208	467.7431011479056	39.338	0.24038	39.338	39.239	39.479	0					24	13	3	0	0	0	0.52436	1	14016	14016		29.842	6.7991	1	92382			11888	6185	7681	7714	12077	12077					0.0014553307156575102
GAAGVHFIY	9	Unmodified	_GAAGVHFIY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.74249267578125	2	467.742702	933.470852	0.59901	0.00028018	-0.95207	-0.00044532	-0.35305	-0.00016514	467.74224096033794	39.517	0.64179	39.517	39.376	40.017	0					30	14	4	0	0	0	0.038834	1	15614	15614		100.36	45.595	1	1418100			11889	6185	7681	7714	12078	12078					0.0014553307156575102
GAAKAQAK	8	Unmodified	_GAAKAQAK_					0	0	0			REV__ENST00000243189.11_1_1:25573353-25573824:-|nuORF	REV__ENST00000243189.11_1_1:25573353-25573824:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.7215576171875	2	372.72177	743.428987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.078	1	31.078	30.578	31.578	0								0	0	0	1.7419	1	11277	11277		52.299	0	1		+		11890	17931	7682	7715	12079	12079					0.04700977383038207
GAAKKPKK	8	Unmodified	_GAAKKPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;REV__ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.2764587402344	2	414.276712	826.538872	-0.74805	-0.0003099	0.62962	0.00026084	-0.11843	-4.9064E-05	414.27693285576976	19.163	0.34899	19.163	18.913	19.262	0					21	8	3	0	0	0	0.52345	1	5746	5746		57.811	7.7867	1	464560			11891	7222;6080;3386;17144	7683	7716	12080	12080					0.11866402722228031
GAAKKPKK	8	Unmodified	_GAAKKPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;REV__ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2764892578125	2	414.276712	826.538872	-2.3226	-0.00096219	2.06	0.00085342	-0.26253	-0.00010876	414.2776029996198	18.967	0.30864	18.967	18.667	18.975	0					12	7	2	0	0	0	0.68754	1	4988	4988		35.201	1.6851	1	101290			11892	7222;6080;3386;17144	7683	7716	12081	12081					0.11866402722228031
GAAKKPPVTFA	11	Unmodified	_GAAKKPPVTFA_					0	0	0		TRIM29|p.E403Rfs*7|1|0.16|ENSG00000137699|chr11:120125817-120125817|C/-|frameshift_variant;nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	TRIM29|p.E403Rfs*7|1|0.16|ENSG00000137699|chr11:120125817-120125817|C/-|frameshift_variant	TRIM29|p.E403Rfs*7|1|0.16|ENSG00000137699|chr11:120125817-120125817|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8202514648438	2	543.818941	1085.62333	1.0852	0.00059013	0.14002	7.6148E-05	1.2252	0.00066628	543.8190315073978	32.557	0.6939	32.557	32.168	32.862	0					36	20	2	0	0	0	0.69524	1	11363	11363		28.081	28.081	1	129490			11893	4184	7684	7717	12082	12082					0.08394308748324875
GAAKKVPA	8	Unmodified	_GAAKKVPA_					0	0	0		ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1;nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1	ENSG00000173805|ENST00000347901|HAP1	ENSG00000173805|ENST00000347901|HAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	371.2339172363281	2	371.234513	740.454474	-1.0324	-0.00038325	0.64744	0.00024035	-0.38494	-0.0001429	371.23468553380314	14.17	0.070707	14.17	14.121	14.191	0					6	3	2	0	0	0	0.79176	1	3015	3015		21.702	1.2205	1	38832			11894	6451	7685	7718	12083	12083					0.07386451905460945
GAALLWKQ	8	Unmodified	_GAALLWKQ_					0	0	0			REV__ENST00000428886.6_1_11:6638445-6640631:-|nuORF	REV__ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7602844238281	2	443.760895	885.507237	-0.23362	-0.00010367	-2.5455	-0.0011296	-2.7791	-0.0012332	443.75954663902615	23.37	0.36764	23.37	23.111	23.479	0					10	7	2	0	0	0	0.59411	1	8058	8058		50.025	4.0726	1	311320	+		11895	16109	7686	7719	12084	12084					0.059904099682853484
GAALLWKQ	8	Unmodified	_GAALLWKQ_					0	0	0			REV__ENST00000428886.6_1_11:6638445-6640631:-|nuORF	REV__ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.76031494140625	2	443.760895	885.507237	-0.48908	-0.00021704	-0.46826	-0.0002078	-0.95735	-0.00042483	443.7604343056086	23.344	0.2672	23.344	23.184	23.451	0					8	5	2	0	0	0	0.57802	1	7916	7916		52.299	4.3836	1	353750	+		11896	16109	7686	7719	12085	12085					0.059904099682853484
GAAPIGIPR	9	Unmodified	_GAAPIGIPR_					0	0	0		ENST00000557028.5_1_14:24837525-24843333:+|nuORF;NFATC4|p.A853Gfs*31|1|0.47|ENSG00000100968|chr14:24376789-24376790|-/G|frameshift_variant;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;nc|ENSG00000100968|Q14934-11|NFATC4;ENST00000554655.5_1_14:24837525-24841293:+|nuORF;NFATC4|p.Y722Tfs*122|1|0.43|ENSG00000100968|chr14:24376395-24376395|C/-|frameshift_variant;nc|ENSG00000100968|Q14934-14|NFATC4;NFATC4|p.F811Lfs*13|1|0.48|ENSG00000100968|chr14:24376662-24376663|-/C|frameshift_variant;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;ENST00000556957.5_1_14:24836547-24843333:+|nuORF;ENST00000556302.5_1_14:24838518-24843333:+|nuORF;ENST00000440487.6_1_14:24834883-24840960:+|nuORF;nc|ENSG00000100968|Q14934-2|NFATC4	ENST00000557028.5_1_14:24837525-24843333:+|nuORF	ENST00000557028.5_1_14:24837525-24843333:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.9225158691406	2	426.25852	850.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.685	1	33.685	33.185	34.185	0								0	0	0	0.24438	1	12912	12912		44.531	3.9584	1				11897	2077	7687	7720	12086	12086					0.07125525825517798
GAAPLQLAIGP	11	Unmodified	_GAAPLQLAIGP_					0	0	0			REV__ENST00000370526.3_1_X:140270480-140270732:-|nuORF	REV__ENST00000370526.3_1_X:140270480-140270732:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.879	1	45.879	45.379	46.379	0								0	0	0	0.45674	1	14208	14208		10.587	0	1		+		11898	18636	7688	7721	12087	12087					0.07810333339921272
GAAPPTPPR	9	Unmodified	_GAAPPTPPR_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2;LTBP2|p.V586*|1|0.36|ENSG00000119681|chr14:74549896-74549896|C/-|frameshift_variant;LTBP2|p.G1123Afs*55|1|0.28|ENSG00000119681|chr14:74509273-74509273|C/-|frameshift_variant;LTBP2|p.H1189Pfs*57|1|0.22|ENSG00000119681|chr14:74508690-74508691|-/G|frameshift_variant	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.24017333984375	2	432.240327	862.466101	-0.79385	-0.00034313	0.25484	0.00011015	-0.53901	-0.00023298	432.24050607144187	19.904	0.38774	19.904	19.706	20.093	0					17	13	2	0	0	0	0.60749	1	5488	5488		20.947	0.4651	1	79332			11899	3127	7689	7722	12088	12088					0.029366489287895092
GAAQLLGQM	9	Unmodified	_GAAQLLGQM_					0	0	0			REV__nc|ENSG00000133816|O94851-2|MICAL2	REV__nc|ENSG00000133816|O94851-2|MICAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.7337951660156	2	444.73402	887.453487	-0.29395	-0.00013073	-0.22143	-9.8478E-05	-0.51538	-0.00022921	444.733909141909	22.431	0.25375	22.431	22.307	22.561	0					12	7	2	0	0	0	0.32741	1	6332	6332		47.916	3.3845	1	245180	+		11900	20050	7690	7723	12089	12089					0.00525869474256524
GAARFALQK	9	Unmodified	_GAARFALQK_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2821350097656	2	481.282526	960.550499	-0.13347	-6.4237E-05	-0.56099	-0.00027	-0.69447	-0.00033423	481.2822789773605	22.929	0.21497	22.929	22.834	23.049	0					11	5	3	0	0	0	0.13267	1	7526	7526		71.877	7.6702	1	655540			11901	955	7691	7724	12090	12090					0.06864599745551914
GAARGVEACVA	11	Carbamidomethyl (C)	_GAARGVEAC(Carbamidomethyl (C))VA_	GAARGVEAC(1)VA		GAARGVEAC(53)VA		0	1	0			REV__ENST00000434404.2_1_1:229406689-229407103:-|nuORF	REV__ENST00000434404.2_1_1:229406689-229407103:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.766357421875	2	530.76384	1059.51313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.554	1	20.554	20.054	21.054	0								0	0	0	0.29423	1	6396	6396		52.937	11.51	1		+		11902	19194	7692	7725	12091	12091	687				-0.014248595823801224
GAASGRRR	8	Unmodified	_GAASGRRR_					0	0	0		ENST00000599599.5_2_19:57106675-57112942:+|nuORF	REV__ENST00000441869.5_1_11:46402786-46402852:+|nuORF	REV__ENST00000441869.5_1_11:46402786-46402852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.7398681640625	2	415.738817	829.463081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.065	1	31.065	30.565	31.565	0								0	0	0	1.7419	1	9955	9955		8.2313	0	1				11903	11027	7693	7726	12092	12092					0.04152818594650398
GAASSRRR	8	Unmodified	_GAASSRRR_					0	0	0			REV__ENST00000436072.6_1_7:37955747-37956332:-|nuORF	REV__ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.741943359375	2	430.744099	859.473646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.202	1	19.202	18.702	19.702	0								0	0	0	1.7419	1	5157	5157		76.847	0	1		+		11904	19205	7694	7727	12093	12093					0.03828801249096614
GAATFALV	8	Unmodified	_GAATFALV_					0	0	0			REV__PTPRF|p.V494A|1|0.34|ENSG00000142949|chr1:43591503-43591503|T/C|missense_variant	REV__PTPRF|p.V494A|1|0.34|ENSG00000142949|chr1:43591503-43591503|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.2131652832031	2	375.213246	748.41194	-0.36642	-0.00013749	0.88737	0.00033295	0.52094	0.00019547	375.21358109198565	30.78	0.26582	30.78	30.68	30.946	0					7	5	2	0	0	0	0.66238	1	11453	11453		39.021	1.993	1	98283	+		11905	21429	7695	7728	12094	12094					0.02767056777236121
GAAVLHQRR	9	Unmodified	_GAAVLHQRR_					0	0	0		ENST00000480991.1_1_1:1597188-1601283:-|nuORF	ENST00000480991.1_1_1:1597188-1601283:-|nuORF	ENST00000480991.1_1_1:1597188-1601283:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.251	1	20.251	19.751	20.751	0								0	0	0	0.35507	1	6535	6535		18.262	0	1				11906	9954	7696	7729	12095	12095					0.0754192272564751
GAAVLHQRR	9	Unmodified	_GAAVLHQRR_					0	0	0		ENST00000480991.1_1_1:1597188-1601283:-|nuORF	ENST00000480991.1_1_1:1597188-1601283:-|nuORF	ENST00000480991.1_1_1:1597188-1601283:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.554	1	33.554	33.054	34.054	0								0	0	0	0.35507	1	12767	12767		24.519	0	1				11907	9954	7696	7729	12096	12096					0.0754192272564751
GAAVLHQRR	9	Unmodified	_GAAVLHQRR_					0	0	0		ENST00000480991.1_1_1:1597188-1601283:-|nuORF	ENST00000480991.1_1_1:1597188-1601283:-|nuORF	ENST00000480991.1_1_1:1597188-1601283:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.716	1	50.716	50.216	51.216	0								0	0	0	0.37496	1	19953	19953		13.454	0.64233	1				11908	9954	7696	7729	12097	12097					0.0754192272564751
GAAVVMLLPA	10	Unmodified	_GAAVVMLLPA_					0	0	0		ENST00000472442.2_1_19:1922970-1924280:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.77825927734375	2	471.278063	940.541574	-0.58276	-0.00027464	3.0489	0.0014369	2.4662	0.0011623	471.2797632512506	18.89	0.27515	18.89	18.717	18.992	0					13	6	3	0	0	0	0.59237	1	4996	4996		35.201	1.6851	1	226880			11909	7883	7697	7730	12098	12098					0.06892490064865342
GACIGQKGA	9	Carbamidomethyl (C)	_GAC(Carbamidomethyl (C))IGQKGA_	GAC(1)IGQKGA		GAC(58)IGQKGA		0	1	0		tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.2151794433594	2	431.215995	860.417436	0.16329	7.0414E-05	-0.58434	-0.00025198	-0.42105	-0.00018156	431.21564023056277	17.594	0.16681	17.594	17.469	17.636	0					9	5	2	0	0	0	0.23186	1	4208	4208		57.811	8.3697	1	133180			11910	22916	7698	7731	12099	12099	757				-0.018355877026010603
GACRAGRRLL	10	Unmodified	_GACRAGRRLL_					0	0	0			REV__ENST00000507307.5_1_5:179125985-179126592:+|nuORF	REV__ENST00000507307.5_1_5:179125985-179126592:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.2095947265625	3	358.210065	1071.60837	0.30203	0.00010819	-1.2459	-0.00044628	-0.94384	-0.00033809	358.20956848848937	22.619	0.26087	22.619	22.567	22.828	0					9	5	2	0	0	0	0.44601	1	7697	7697		51.193	9.7661	1	149860	+		11911	17948	7699	7732	12100	12100					0.07542538399343357
GACRAGRRLL	10	Unmodified	_GACRAGRRLL_					0	0	0			REV__ENST00000507307.5_1_5:179125985-179126592:+|nuORF	REV__ENST00000507307.5_1_5:179125985-179126592:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.2097473144531	3	358.210065	1071.60837	-0.061793	-2.2135E-05	-0.79284	-0.000284	-0.85464	-0.00030614	358.20975813684277	22.646	0.41767	22.646	22.538	22.956	0					16	8	4	0	0	0	0.63224	1	7574	7574		30.318	1.1682	1	523720	+		11912	17948	7699	7732	12101	12101					0.07542538399343357
GACVVRQK	8	Unmodified	_GACVVRQK_					0	0	0		ENST00000608354.1_1_22:30642226-30642904:+|nuORF	ENST00000608354.1_1_22:30642226-30642904:+|nuORF	ENST00000608354.1_1_22:30642226-30642904:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.7405700683594	2	430.742179	859.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.554	1	17.554	17.054	18.054	0								0	0	0	1.7419	1	4421	4421		44.531	0	1				11913	11097	7700	7733	12102	12102					0.034449954310161957
GADGKLGPVLI	11	Unmodified	_GADGKLGPVLI_					0	0	0			REV__ENST00000236693.11_1_2:3651915-3673629:+|nuORF	REV__ENST00000236693.11_1_2:3651915-3673629:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3109130859375	2	520.310949	1038.60735	1.6793	0.00087374	-1.0485	-0.00054555	0.63074	0.00032818	520.3103031487645	38.672	0.6276	38.672	38.195	38.822	0					37	22	2	0	0	0	0.68382	1	15107	15107		29.17	2.4771	1	122420	+		11914	14210	7701	7734	12103	12103					0.08958602511438585
GADNLQVI	8	Unmodified	_GADNLQVI_					0	0	0			REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.22418212890625	2	415.224342	828.434132	-0.77044	-0.0003199	0.4095	0.00017003	-0.36094	-0.00014987	415.224463198659	21.987	0.22169	21.987	21.898	22.119	0					11	5	3	0	0	0	0.29779	1	7078	7078		83.287	6.4406	1	433450	+		11915	14248	7702	7735	12104	12104					0.013052364549935191
GADRGFVL	8	Unmodified	_GADRGFVL_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.7285461425781	2	417.727052	833.439552	2.7217	0.0011369	0.80035	0.00033433	3.5221	0.0014713	417.72740613668935	24.504	0.16481	24.504	24.447	24.611	0					8	3	3	0	0	0	0.49887	1	8479	8479		60.294	10.269	1	859320	+		11916	16538	7703	7736	12105	12105					0.016169600374723814
GADYRWSF	8	Unmodified	_GADYRWSF_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.227294921875	2	501.227417	1000.44028	-0.045323	-2.2717E-05	-1.0425	-0.00052255	-1.0879	-0.00054527	501.22674806381195	19.048	0.26947	19.048	18.896	19.166	0					10	8	2	0	0	0	0.66372	1	4854	4854		38.806	3.1879	1	65423			11917	5607	7704	7737	12106	12106					-0.059922453134845455
GADYRWSF	8	Unmodified	_GADYRWSF_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.22698974609375	2	501.227417	1000.44028	-0.97298	-0.00048768	0.25192	0.00012627	-0.72106	-0.00036142	501.2275799157728	19.069	0.30278	19.069	18.859	19.162	0					17	9	2	0	0	0	0.68432	1	5118	5118		35.618	2.8059	1	99237			11918	5607	7704	7737	12107	12107					-0.059922453134845455
GAEECHLK	8	Unmodified	_GAEECHLK_					0	0	0			REV__ENST00000355540.7_1_7:98529083-98530886:+|nuORF	REV__ENST00000355540.7_1_7:98529083-98530886:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7893371582031	2	443.708002	885.401452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.035	1	17.035	16.535	17.535	0								0	0	0	1.7419	1	4989	4989		40.573	1.7665	1		+		11919	18509	7705	7738	12108	12108					-0.04583293939504074
GAEFGGKLEF	10	Unmodified	_GAEFGGKLEF_					0	0	0			REV__tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1	REV__tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7692260742188	2	527.763832	1053.51311	1.6294	0.00085996	1.8215	0.00096132	3.4509	0.0018213	527.7643677531596	36.247	0.56552	36.247	35.963	36.529	0					24	11	4	0	0	0	0.4758	1	14045	14045		47.96	7.3869	1	956690	+		11920	22193	7706	7739	12109	12109					-0.011505363107289668
GAEIHKNRLNA	11	Unmodified	_GAEIHKNRLNA_					0	0	0		tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.839111328125	2	611.836185	1221.65782	2.9577	0.0018096	1.9027	0.0011641	4.8604	0.0029737	611.83744360698	19.615	0.16546	19.615	19.508	19.673	0					5	3	2	0	0	0	0.63225	1	6107	6107		24.519	0.99649	1	553720			11921	22692	7707	7740	12110	12110					0.05585524889147564
GAEQRKPLQ	9	Unmodified	_GAEQRKPLQ_					0	0	0		SYNPO2L|p.S608Afs*70|1|0.47|ENSG00000166317|chr10:73647831-73647831|G/-|frameshift_variant;SYNPO2L|p.Q823Rfs*25|1|0.39|ENSG00000166317|chr10:73647185-73647185|G/-|frameshift_variant;SYNPO2L|p.F821Sfs*27|2|0.29|ENSG00000166317|chr10:73647190-73647190|A/-|frameshift_variant;ENSG00000166317|ENST00000394810|SYNPO2L	SYNPO2L|p.S608Afs*70|1|0.47|ENSG00000166317|chr10:73647831-73647831|G/-|frameshift_variant	SYNPO2L|p.S608Afs*70|1|0.47|ENSG00000166317|chr10:73647831-73647831|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	342.8608093261719	3	342.861207	1025.56179	0.20838	7.1445E-05	-0.5453	-0.00018696	-0.33692	-0.00011552	342.86086298379763	17.383	0.063168	17.383	17.354	17.417	0					4	2	2	0	0	0	0.2873	1	4143	4143		51.335	17.163	1	63324			11922	5886	7708	7741	12111	12111					0.05003377049047231
GAERPLVQ	8	Unmodified	_GAERPLVQ_					0	0	0			REV__ENST00000469080.5_1_X:47104878-47106896:+|nuORF	REV__ENST00000469080.5_1_X:47104878-47106896:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2455749511719	2	435.245609	868.476666	-0.60951	-0.00026529	0.42344	0.0001843	-0.18607	-8.0987E-05	435.2458623866405	17.916	0.10608	17.916	17.863	17.969	0					6	2	3	0	0	0	0.24915	1	4578	4578		102.77	9.5779	1	466380	+		11923	19447	7709	7742	12112	12112					0.037166315832337204
GAERPLVQ	8	Unmodified	_GAERPLVQ_					0	0	0			REV__ENST00000469080.5_1_X:47104878-47106896:+|nuORF	REV__ENST00000469080.5_1_X:47104878-47106896:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2454833984375	2	435.245609	868.476666	0.79989	0.00034815	-1.1562	-0.00050325	-0.35635	-0.0001551	435.2451376632552	18.117	0.16499	18.117	18.01	18.175	0					6	3	2	0	0	0	0.32815	1	5369	5369		79.451	0	1	3728100	+		11924	19447	7709	7742	12113	12113					0.037166315832337204
GAETKNLQLL	10	Unmodified	_GAETKNLQLL_					0	0	0		ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8118286132812	2	543.811313	1085.60807	0.35161	0.00019121	0.56753	0.00030863	0.91915	0.00049984	543.811703388294	37.258	0.22282	37.258	37.168	37.391	0					11	6	3	0	0	0	0.39827	1	14100	14100		56.434	1.7114	1	210070			11925	6202	7710	7743	12114	12114					0.06869397160471635
GAFAMIKV	8	Unmodified	_GAFAMIKV_					0	0	0			REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	418.7384948730469	2	418.738574	835.462595	-1.3415	-0.00056173	1.2269	0.00051377	-0.11453	-4.7958E-05	418.7390360449961	27.488	0.23669	27.488	27.383	27.62	0					19	8	3	0	0	0	0.74117	1	8761	8761		28.254	0	1	252250	+		11926	14744	7711	7744	12115	12115					0.038282628305978506
GAFGKPSSL	9	Unmodified	_GAFGKPSSL_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2344665527344	2	432.23471	862.454868	-0.4699	-0.00020311	0.25872	0.00011183	-0.21119	-9.1282E-05	432.2347896790306	29.043	0.36626	29.043	28.918	29.285	0					28	9	5	0	0	0	0.037569	1	10302	10302		101.6	22.15	1	3857400			11927	1941	7712	7745	12116	12116					0.018138268346547193
GAFGKPSSL	9	Unmodified	_GAFGKPSSL_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.23455810546875	2	432.23471	862.454868	-0.43561	-0.00018828	0.047445	2.0508E-05	-0.38816	-0.00016778	432.23469222893556	28.841	0.31564	28.841	28.71	29.026	0					16	7	3	0	0	0	0.098791	1	9616	9616		79.713	7.8351	1	580360			11928	1941	7712	7745	12117	12117					0.018138268346547193
GAFNGTVKK	9	Unmodified	_GAFNGTVKK_					0	0	0		POLR3A|p.K348Nfs*33|1|0.16|ENSG00000148606|chr10:78021864-78021864|T/-|frameshift_variant;ENSG00000148606|ENST00000372371|POLR3A	POLR3A|p.K348Nfs*33|1|0.16|ENSG00000148606|chr10:78021864-78021864|T/-|frameshift_variant	POLR3A|p.K348Nfs*33|1|0.16|ENSG00000148606|chr10:78021864-78021864|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2613525390625	2	461.261259	920.507966	-0.70675	-0.000326	0.51007	0.00023528	-0.19668	-9.072E-05	461.2615327548314	17.497	0.20385	17.497	17.415	17.619	0					12	5	4	0	0	0	0.01873	1	4952	4952		124.08	12.432	1	1561000			11929	4844	7713	7746	12118	12118					0.0445320461733445
GAFYKGFVK	9	Unmodified	_GAFYKGFVK_					0	0	0		FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant;ENSG00000129245|ENST00000250113|FXR2	FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant	FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7815856933594	2	508.781828	1015.5491	1.3268	0.00067504	-1.5436	-0.00078537	-0.21686	-0.00011033	508.7810360148278	30.62	0.41248	30.62	30.517	30.929	0					11	8	2	0	0	0	0.2873	1	11372	11372		51.335	3.6781	1	613870			11930	3588	7714	7747	12119	12119					0.04194965656813565
GAGAARPATY	10	Unmodified	_GAGAARPATY_					0	0	0			REV__ENST00000477225.1_1_3:49161274-49161370:-|nuORF	REV__ENST00000477225.1_1_3:49161274-49161370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.74237060546875	2	467.740691	933.466829	2.639	0.0012344	1.0387	0.00048582	3.6777	0.0017202	467.74124832454055	39.509	1.0749	39.509	39.364	40.439	0					51	24	4	0	0	0	0.54197	1	15605	15605		40.778	2.9666	1	8410400	+		11931	19548	7715	7748	12120	12120					-0.0025655642216406704
GAGAMPCKSAE	11	Unmodified	_GAGAMPCKSAE_					0	0	0		DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant;ENSG00000164086|ENST00000495880|DUSP7	DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant	DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.22662353515625	2	511.225702	1020.43685	1.4049	0.00071822	3.0803	0.0015747	4.4852	0.0022929	511.2263371813862	19.762	0.42066	19.762	19.623	20.044	0					22	8	5	0	0	0	0.33926	1	6190	6190		58.23	0	1	881310			11932	859	7716	7749	12121	12121					-0.07254999474002943
GAGCGLLEV	9	Unmodified	_GAGCGLLEV_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.7073059082031	2	409.707471	817.400389	0.81242	0.00033286	-1.0097	-0.0004137	-0.19731	-8.0839E-05	409.7069635200231	23.125	0.51319	23.125	22.722	23.235	0					20	10	3	0	0	0	0.30268	1	7811	7811		50.025	3.2581	1	592590	+		11933	15726	7717	7750	12122	12122					-0.015615083084071557
GAGDMRCDR	9	Unmodified	_GAGDMRCDR_					0	0	0			REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7066345214844	2	490.705468	979.396383	2.6714	0.0013109	-0.11148	-5.4703E-05	2.5599	0.0012562	490.7053762555771	16.274	0.21821	16.274	16.166	16.384	0					10	4	3	0	0	0	0.43426	1	4486	4486		38.806	8.3025	1	602040	+		11934	18740	7718	7751	12123	12123					-0.09413921073769416
GAGEAPYANY	10	Unmodified	_GAGEAPYANY_					0	0	0		ENST00000248451.7_1_2:219135136-219135235:+|nuORF	ENST00000248451.7_1_2:219135136-219135235:+|nuORF	ENST00000248451.7_1_2:219135136-219135235:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.7245178222656	2	506.722164	1011.42977	3.7817	0.0019163	-0.11982	-6.0717E-05	3.6619	0.0018556	506.722106343104	34.344	0.18744	34.344	34.251	34.438	0					19	8	3	0	0	0	0.37692	1	11566	11566		58.782	7.4465	1	173200			11935	8236	7719	7752	12124	12124					-0.07548272758583607
GAGGAFATVL	10	Unmodified	_GAGGAFATVL_					0	0	0		tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2345886230469	2	432.23471	862.454868	-0.78859	-0.00034086	0.36464	0.00015761	-0.42395	-0.00018324	432.2348529593379	28.798	0.32838	28.798	28.668	28.996	0					28	12	4	0	0	0	0.33577	1	9289	9289		63.306	6.5852	1	1091600			11936	22627	7720	7753	12125	12125					0.018138268346547193
GAGGWSGG	8	Unmodified	_GAGGWSGG_					0	0	0			REV__ENST00000560935.1_1_14:24652387-24652645:-|nuORF	REV__ENST00000560935.1_1_14:24652387-24652645:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.64178466796875	2	324.640446	647.266338	0.63846	0.00020727	3.3	0.0010713	3.9384	0.0012786	324.64206115417585	44.247	0.1859	44.247	44.175	44.361	0					18	11	2	0	0	0	0.79293	1	16614	16614		15.636	0	1	50726	+		11937	20288	7721	7754	12126	12126					-0.07140406018936574
GAGPFSSLAVF	11	Unmodified	_GAGPFSSLAVF_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7739868164062	2	526.7742	1051.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.763	1	47.763	47.263	48.263	0								0	0	0	0.19244	1	19037	19037		64.207	3.9133	1		+		11938	16772	7722	7755	12127	12127					0.010140540689462796
GAGPPPKDK	9	Unmodified	_GAGPPPKDK_					0	0	0			REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.73858642578125	2	433.74016	865.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.877	1	10.877	10.377	11.377	0								0	0	0	0.40224	1	2119	2119		10.265	1.4429	1		+		11939	16264	7723	7756	12128	12128					0.0276522920894422
GAGRERLLRWK	11	Unmodified	_GAGRERLLRWK_					0	0	0		ENST00000380009.8_1_5:94890945-94903636:+|nuORF	ENST00000380009.8_1_5:94890945-94903636:+|nuORF	ENST00000380009.8_1_5:94890945-94903636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.9331359863281	3	447.933588	1340.77894	-0.41571	-0.00018621	-0.99997	-0.00044792	-1.4157	-0.00063413	447.93323391140814	12.748	0.096261	12.748	12.66	12.756	0					4	2	2	0	0	0	0.60833	1	2781	2781		36.318	1.1394	1	86269			11940	9091	7724	7757	12129	12129					0.12217772322446763
GAGRLRTTRA	10	Unmodified	_GAGRLRTTRA_					0	0	0			REV__ENST00000446489.1_1_11:1784244-1784937:-|nuORF	REV__ENST00000446489.1_1_11:1784244-1784937:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.5448913574219	3	353.544101	1057.61047	1.4365	0.00050788	0.4948	0.00017493	1.9313	0.00068281	353.544222282436	25.608	0.16943	25.608	25.498	25.667	0					8	3	3	0	0	0	0.67098	1	8999	8999		18.531	0	1	373420	+		11941	19281	7725	7758	12130	12130					0.08397290408765912
GAGTHWEGAV	10	Unmodified	_GAGTHWEGAV_					0	0	0			REV__ENST00000596558.6_3_19:18650376-18652505:-|nuORF	REV__ENST00000596558.6_3_19:18650376-18652505:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7319030761719	2	492.730323	983.446094	2.7448	0.0013525	-0.14906	-7.3448E-05	2.5958	0.001279	492.73031211409597	19.314	0.41074	19.314	19.212	19.623	0					17	8	3	0	0	0	0.4943	1	5941	5941		45.952	45.952	1	848560	+		11942	20565	7726	7759	12131	12131					-0.04629146801812567
GAGTRARGWK	10	Unmodified	_GAGTRARGWK_					0	0	0			REV__OSM|p.E214Rfs*15|1|0.25|ENSG00000099985|chr22:30264002-30264002|C/-|frameshift_variant	REV__OSM|p.E214Rfs*15|1|0.25|ENSG00000099985|chr22:30264002-30264002|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3241577148438	2	530.293956	1058.57336	1.6443	0.00087197	-1.817	-0.00096355	-0.17269	-9.1577E-05	530.2928966825139	16.541	0.3134	16.541	16.384	16.697	0					15	6	4	0	0	0	0.46989	1	4662	4662		44.377	0	1	2381600	+		11943	21330	7727	7760	12132	12132					0.046416188630246324
GAHGIIVVY	9	Unmodified	_GAHGIIVVY_					0	0	0		ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A	ENSG00000174903|ENST00000311481|RAB1B	ENSG00000174903|ENST00000311481|RAB1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7658386230469	2	464.766178	927.517802	-0.68749	-0.00031952	0.31594	0.00014684	-0.37155	-0.00017268	464.76639074614536	38.554	0.4679	38.554	38.455	38.923	0					39	18	4	0	0	0	0.43174	1	14632	14632		39.021	10.767	1	1761600			11944	4221	7728	7761	12133	12133					0.05114392622704145
GAHGIIVVY	9	Unmodified	_GAHGIIVVY_					0	0	0		ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A	ENSG00000174903|ENST00000311481|RAB1B	ENSG00000174903|ENST00000311481|RAB1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.76568603515625	2	464.766178	927.517802	0.71026	0.0003301	-1.5143	-0.00070381	-0.80407	-0.0003737	464.7653768449871	38.44	0.24336	38.44	38.35	38.594	0					10	5	2	0	0	0	0.31222	1	15128	15128		49.211	18.707	1	127900			11945	4221	7728	7761	12134	12134					0.05114392622704145
GAHPLEKSK	9	Unmodified	_GAHPLEKSK_					0	0	0		NOC4L|p.A205Pfs*13|2|0.34|ENSG00000184967|chr12:132147883-132147883|C/-|frameshift_variant;NOC4L|p.A205Rfs*74|1|0.45|ENSG00000184967|chr12:132147882-132147883|-/C|frameshift_variant;NOC4L|p.P381Lfs*103|1|0.35|ENSG00000184967|chr12:132151548-132151548|C/-|frameshift_variant;ENSG00000184967|ENST00000330579|NOC4L	NOC4L|p.A205Pfs*13|2|0.34|ENSG00000184967|chr12:132147883-132147883|C/-|frameshift_variant	NOC4L|p.A205Pfs*13|2|0.34|ENSG00000184967|chr12:132147883-132147883|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.85028076171875	3	322.85042	965.529429	0.38953	0.00012576	-0.25867	-8.3512E-05	0.13086	4.225E-05	322.8502963309457	14.192	0.21001	14.192	13.991	14.201	0					7	4	2	0	0	0	0.54267	1	3574	3574		27.882	4.8398	1	192920			11946	7048	7729	7762	12135	12135					0.04528589646054115
GAHRILPV	8	Unmodified	_GAHRILPV_					0	0	0		ENST00000484003.1_1_6:32810810-32812071:-|nuORF	ENST00000484003.1_1_6:32810810-32812071:-|nuORF	ENST00000484003.1_1_6:32810810-32812071:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.7662658691406	2	431.766512	861.518471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.717	1	26.717	26.217	27.217	0								0	0	0	1.7419	1	9596	9596		19.36	0	1				11947	9988	7730	7763	12136	12136					0.08217232062429503
GAHVGSVVPG	10	Unmodified	_GAHVGSVVPG_					0	0	0		ENST00000579200.1_1_18:72775002-72776421:+|nuORF;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407	ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENST00000579200.1_1_18:72775002-72776421:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2372741699219	2	440.237784	878.461016	-3.0291	-0.0013335	2.3059	0.0010151	-0.7232	-0.00031838	440.2386859151716	15.567	0.15491	15.567	15.464	15.619	0					10	5	2	0	0	0	0.54387	1	3511	3511		40.573	1.7665	1	95285			11948	7831	7731	7764	12137	12137					0.01692345066192047
GAIAAIMQK	9	Unmodified	_GAIAAIMQK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.75994873046875	2	451.760038	901.505523	-0.5098	-0.00023031	-0.36672	-0.00016567	-0.87652	-0.00039598	451.7600589159828	31.975	0.25152	31.975	31.887	32.139	0					11	6	3	0	0	0	0.032656	1	11702	11702		106.42	17.772	1	221500			11949	3782	7732	7765	12138	12138					0.0508303288801244
GAIAAIMQK	9	Unmodified	_GAIAAIMQK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7593994140625	2	451.760038	901.505523	-2.6121	-0.0011801	1.3851	0.00062574	-1.227	-0.00055432	451.76057680978306	31.702	0.12021	31.702	31.658	31.778	0					5	3	2	0	0	0	0.032656	1	10956	10956		106.42	45.443	1	46607			11950	3782	7732	7765	12139	12139					0.0508303288801244
GAIEKTFTK	9	Unmodified	_GAIEKTFTK_					0	0	0		ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.78167724609375	2	497.782025	993.549496	-1.1281	-0.00056153	0.76591	0.00038126	-0.36216	-0.00018028	497.78213916013874	21.709	0.12051	21.709	21.635	21.756	0					6	3	2	0	0	0	0.18416	1	6286	6286		63.534	13.509	1	187070			11951	4364	7733	7766	12140	12140					0.05246340585995313
GAIEKTFTK	9	Unmodified	_GAIEKTFTK_					0	0	0		ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7814636230469	2	497.782025	993.549496	0.17939	8.9295E-05	-0.79172	-0.0003941	-0.61233	-0.00030481	497.7816016781482	21.767	0.10073	21.767	21.719	21.82	0					4	2	2	0	0	0	0.3269	1	6383	6383		47.96	2.0076	1	114940			11952	4364	7733	7766	12141	12141					0.05246340585995313
GAIEKTFTK	9	Unmodified	_GAIEKTFTK_					0	0	0		ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7821960449219	2	497.782025	993.549496	-2.266	-0.001128	1.9078	0.00094966	-0.35825	-0.00017833	497.7830692919357	21.754	0.10364	21.754	21.702	21.806	0					4	2	2	0	0	0	0.14578	1	6375	6375		68.846	5.3123	1	95041			11953	4364	7733	7766	12142	12142					0.05246340585995313
GAIIHTVAL	9	Unmodified	_GAIIHTVAL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.77410888671875	2	447.774003	893.533452	-0.30049	-0.00013455	-0.10433	-4.6717E-05	-0.40482	-0.00018127	447.77394762463973	37.751	0.40406	37.751	37.646	38.05	0					66	23	4	0	0	0	0.028654	1	12332	12332		110.34	18.147	1	5763000			11954	1085	7734	7767	12143	12143					0.08242679139755182
GAIIHTVAL	9	Unmodified	_GAIIHTVAL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.27545166015625	2	447.774003	893.533452	-0.43711	-0.00019573	0.29606	0.00013257	-0.14105	-6.3158E-05	447.7741203488926	38.061	0.62608	38.061	37.96	38.586	0					65	24	4	0	0	0	0.018785	1	14426	14426		123.99	18.72	1	26122000			11955	1085	7734	7767	12144	12144					0.08242679139755182
GAIIHTVAL	9	Unmodified	_GAIIHTVAL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7742919921875	2	447.774003	893.533452	-0.18038	-8.0768E-05	0.48006	0.00021496	0.29968	0.00013419	447.774226391962	38.005	0.4971	38.005	37.918	38.415	0					37	17	3	0	0	0	0.024477	1	14886	14886		114.59	4.8821	1	8134900			11956	1085	7734	7767	12145	12145					0.08242679139755182
GAIIVGNRK	9	Unmodified	_GAIIVGNRK_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2900695800781	2	464.290351	926.566149	2.6007	0.0012075	-2.9125	-0.0013522	-0.31183	-0.00014478	464.2888847112169	22.663	0.31638	22.663	22.505	22.822	0					14	6	4	0	0	0	0.077948	1	7584	7584		85.359	3.0545	1	1658000	+		11957	14235	7735	7768	12146	12146					0.0999288626261432
GAIKHPSPIR	10	Unmodified	_GAIKHPSPIR_					0	0	0			REV__ENST00000444102.1_1_6:167412443-167412509:-|nuORF	REV__ENST00000444102.1_1_6:167412443-167412509:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3228759765625	2	538.322183	1074.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.75	1	14.75	14.25	15.25	0								0	0	0	0.35368	1	3894	3894		42.396	5.237	1		+		11958	19265	7736	7769	12147	12147					0.0954824669968275
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.3028869628906	2	488.302927	974.591301	-0.081768	-3.9928E-05	-0.62663	-0.00030599	-0.7084	-0.00034591	488.302503660318	25.711	0.30526	25.711	25.615	25.92	0					12	6	3	0	0	0	0.034359	1	7748	7748		104.75	19.387	1	403990			11959	3735	7737	7770	12148	12148					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.87103271484375	3	325.871044	974.591301	0.2886	9.4047E-05	-0.43008	-0.00014015	-0.14148	-4.6104E-05	325.8709243852169	25.703	0.10433	25.703	25.64	25.744	0					9	3	3	0	0	0	0.35045	1	7756	7756		62.107	31.79	1	142570			11960	3735	7737	7770	12149	12149					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.8710632324219	3	325.871044	974.591301	0.53169	0.00017326	-0.65196	-0.00021245	-0.12027	-3.9191E-05	325.8708479934268	26.035	0.30146	26.035	25.903	26.204	0					16	7	4	0	0	0	0.22377	1	8921	8921		85.161	58.468	1	1079100			11961	3735	7737	7770	12150	12150					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	325.870849609375	3	325.871044	974.591301	-0.70263	-0.00022897	0.43375	0.00014135	-0.26888	-8.762E-05	325.87114034638677	25.732	0.32537	25.732	25.642	25.968	0					9	6	2	0	0	0	0.35045	1	8057	8057		71.877	37.705	1	333840			11962	3735	7737	7770	12151	12151					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.30303955078125	2	488.302927	974.591301	-0.078977	-3.8565E-05	-0.43783	-0.00021379	-0.5168	-0.00025236	488.3027161386458	25.992	0.31717	25.992	25.885	26.202	0					17	6	4	0	0	0	0.015338	1	9236	9236		129.68	32.21	1	2724800			11963	3735	7737	7770	12152	12152					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.8710632324219	3	325.871044	974.591301	0.55564	0.00018107	-0.45277	-0.00014754	0.10287	3.3522E-05	325.8708512479476	26.004	0.3994	26.004	25.817	26.217	0					22	7	5	0	0	0	0.26904	1	9243	9243		90.37	55.218	1	1789100			11964	3735	7737	7770	12153	12153					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.302734375	2	488.302927	974.591301	0.49325	0.00024086	-0.89854	-0.00043876	-0.40529	-0.0001979	488.30243922483635	25.797	0.22923	25.797	25.703	25.933	0					5	3	2	0	0	0	0.12239	1	8246	8246		74.255	16.444	1	325150			11965	3735	7737	7770	12154	12154					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.30255126953125	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.799	1	25.799	25.299	26.299	0								0	0	0	0.014441	1	8256	8256		104.75	27.972	1				11966	3735	7737	7770	12155	12155					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.3027648925781	2	488.302927	974.591301	-0.5221	-0.00025495	0.033427	1.6322E-05	-0.48868	-0.00023862	488.30294185752064	25.952	0.50014	25.952	25.718	26.218	0					26	8	5	0	0	0	0.015338	1	9096	9096		129.68	44.323	1	2544800			11967	3735	7737	7770	12156	12156					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;WDR44|p.F898L|1|0.26|ENSG00000131725|chrX:118448939-118448939|C/A|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.30242919921875	2	488.302927	974.591301	0.79295	0.0003872	-1.2656	-0.00061801	-0.47269	-0.00023081	488.3022700887457	25.941	0.3649	25.941	25.837	26.202	0					18	7	4	0	0	0	0.055856	1	9093	9093		93.195	34.414	1	2888500			11968	3735	7737	7770	12157	12157					0.10298941065184408
GAKGRRCQPK	10	Unmodified	_GAKGRRCQPK_					0	0	0			REV__ENSG00000135835|ENST00000367588|KIAA1614	REV__ENSG00000135835|ENST00000367588|KIAA1614	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8090209960938	2	550.808916	1099.60328	-1.3824	-0.00076147	1.8507	0.0010194	0.4683	0.00025794	550.8098476711615	38.47	0.26923	38.47	38.373	38.642	0					29	13	3	0	0	0	0.46215	1	13754	13754		49.442	1.7842	1	185660	+		11969	14824	7738	7771	12158	12158					0.05746234536718475
GAKKASAS	8	Unmodified	_GAKKASAS_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.2063293457031	2	360.205953	718.397353	3.1024	0.0011175	-0.98512	-0.00035485	2.1173	0.00076267	360.2054857865037	48.671	0.6656	48.671	48.463	49.129	0					78	36	3	0	0	0	0.78751	1	19418	19418		12.207	0	1	1030300			11970	1533	7739	7772	12159	12159					0.026889846290941932
GAKKPKNKK	9	Unmodified	_GAKKPKNKK_					0	0	0		CON__Q9TRI1	CON__Q9TRI1	CON__Q9TRI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8272399902344	2	499.827101	997.639649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.714	1	18.714	18.214	19.214	0								0	0	0	0.23459	1	5791	5791		45.952	8.7928	1			+	11971	673	7740	7773	12160	12160					0.1407343470508522
GAKTLEATLN	10	Unmodified	_GAKTLEATLN_					0	0	0		tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.28228759765625	2	509.282389	1016.55022	-1.859	-0.00094675	2.493	0.0012696	0.63401	0.00032289	509.28368121566785	21.474	0.10676	21.474	21.422	21.529	0					4	2	2	0	0	0	0.50287	1	6246	6246		45.022	0.9054	1	71448			11972	22892	7741	7774	12161	12161					0.042611352350377274
GAKVLERKLQ	10	Unmodified	_GAKVLERKLQ_					0	0	0		ENST00000381340.7_1_12:26985723-26986077:-|nuORF	ENST00000381340.7_1_12:26985723-26986077:-|nuORF	ENST00000381340.7_1_12:26985723-26986077:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.3567504882812	2	571.356222	1140.69789	1.1056	0.00063167	-0.72768	-0.00041577	0.37787	0.0002159	571.35599910336	25.945	0.16436	25.945	25.815	25.979	0					5	3	2	0	0	0	0.41335	1	7831	7831		54.776	3.4409	1	104750			11973	9112	7742	7775	12162	12162					0.13317071559708893
GALAPATGPLQ	11	Unmodified	_GALAPATGPLQ_					0	0	0			REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF	REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2790832519531	2	498.279649	994.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.254	1	24.254	23.754	24.754	0								0	0	0	0.29423	1	7534	7534		52.937	1.6012	1		+		11974	19298	7743	7776	12163	12163					0.04725456443236453
GALASVLAGQ	10	Unmodified	_GALASVLAGQ_					0	0	0		NUDT18|p.S70Rfs*23|1|0.22|ENSG00000275074|chr8:22108302-22108302|C/-|frameshift_variant;ENSG00000275074|ENST00000611621|NUDT18	NUDT18|p.S70Rfs*23|1|0.22|ENSG00000275074|chr8:22108302-22108302|C/-|frameshift_variant	NUDT18|p.S70Rfs*23|1|0.22|ENSG00000275074|chr8:22108302-22108302|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.75323486328125	2	443.753267	885.491981	0.77209	0.00034262	-0.8958	-0.00039752	-0.12371	-5.4896E-05	443.7526212668458	11.893	0.17948	11.893	11.804	11.983	0					7	5	2	0	0	0	0.11278	1	2386	2386		93.195	5.4412	1	547890			11975	8105	7744	7777	12164	12164					0.04465498380432109
GALELLRRPA	10	Unmodified	_GALELLRRPA_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.3358154296875	2	548.33529	1094.65603	1.2423	0.0006812	-0.31843	-0.00017461	0.92388	0.00050659	548.3350976377133	19.763	0.20064	19.763	19.662	19.862	0					8	6	2	0	0	0	0.58896	1	5166	5166		35.618	1.4457	1	143110	+		11976	17488	7745	7778	12165	12165					0.11248515871170639
GALFDNENNY	10	Unmodified	_GALFDNENNY_					0	0	0			REV__MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant	REV__MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.2911987304688	2	578.74891	1155.48327	-0.41529	-0.00024035	-1.508	-0.00087276	-1.9233	-0.0011131	578.7474893443433	16.506	0.16663	16.506	16.396	16.563	0					6	3	2	0	0	0	0.66185	1	4695	4695		26.693	2.1737	1	94500	+		11977	17749	7746	7779	12166	12166					-0.08825520046730162
GALGLMLDI	9	Unmodified	_GALGLMLDI_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7530822753906	2	451.754421	901.494289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.338	1	44.338	43.838	44.838	0								0	0	0	0.31623	1	17763	17763		31.955	1.4512	1		+		11978	14242	7747	7780	12167	12167					0.03960210793866281
GALGWGLSI	9	Unmodified	_GALGWGLSI_					0	0	0			REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2428894042969	2	437.245078	872.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.461	1	29.461	28.961	29.961	0								0	0	0	0.071592	1	10523	10523		79.939	3.0926	1		+		11979	22119	7748	7781	12168	12168					0.03426417214348021
GALLGGLAK	9	Unmodified	_GALLGGLAK_					0	0	0			REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1	REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.2553405761719	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.235	1	15.235	14.735	15.735	0								0	0	0	0.25856	1	3431	3431		42.474	0	1		+		11980	22064	7749	7782	12169	12169					0.08903007593983148
GALLMGLLPPL	11	Unmodified	_GALLMGLLPPL_					0	0	0			REV__nc|ENSG00000164037|Q4ZJI4-3|SLC9B1	REV__nc|ENSG00000164037|Q4ZJI4-3|SLC9B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.8346557617188	2	547.835746	1093.65694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.98	1	21.98	21.48	22.48	0								0	0	0	0.45674	1	6143	6143		17.365	0.89182	1		+		11981	15949	7750	7783	12170	12170					0.11385594195894555
GALPPAAG	8	Unmodified	_GALPPAAG_					0	0	0			REV__ENST00000434404.2_1_1:229406689-229407103:-|nuORF	REV__ENST00000434404.2_1_1:229406689-229407103:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.18475341796875	2	327.184489	652.354425	-0.66756	-0.00021842	0.57378	0.00018773	-0.093782	-3.0684E-05	327.184648124011	15.361	0.71639	15.361	15.156	15.872	0					45	25	2	0	0	0	0.79462	1	3614	3614		16.705	0	1	201750	+		11982	19194	7751	7784	12171	12171					0.014342145716682353
GALPPDDLASI	11	Unmodified	_GALPPDDLASI_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7833251953125	2	534.782222	1067.54989	0.16813	8.9913E-05	-0.093356	-4.9925E-05	0.074775	3.9988E-05	534.7823308722175	22.098	0.14006	22.098	22.028	22.168	0					7	4	2	0	0	0	0.72154	1	6443	6443		25.574	0	1	270860	+		11983	14468	7752	7785	12172	12172					0.018817155151737097
GALTRVALEAP	11	Unmodified	_GALTRVALEAP_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.54986572265625	3	366.548629	1096.62406	3.1613	0.0011588	0.51283	0.00018798	3.6741	0.0013468	366.54868602163174	37.391	0.60119	37.391	37.285	37.886	0					28	12	3	0	0	0	0.68382	1	14624	14624		25.892	0	1	1158300			11984	5315	7753	7786	12173	12173					0.0796110339738334
GALVGKEK	8	Unmodified	_GALVGKEK_					0	0	0			REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.24493408203125	2	401.245078	800.475603	-0.85699	-0.00034386	0.36036	0.00014459	-0.49663	-0.00019927	401.2452457394574	19.513	0.1846	19.513	19.402	19.586	0					6	5	2	0	0	0	0.3961	1	5289	5289		71.296	7.9894	1	228970	+		11985	22182	7754	7787	12174	12174					0.0673841721431927
GALVGKEK	8	Unmodified	_GALVGKEK_					0	0	0			REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.2452697753906	2	401.245078	800.475603	-2.2552	-0.00090487	2.0169	0.00080926	-0.23827	-9.5603E-05	401.2458646439145	19.531	0.18053	19.531	19.437	19.617	0					9	4	3	0	0	0	0.24915	1	5311	5311		102.77	5.3007	1	686070	+		11986	22182	7754	7787	12175	12175					0.0673841721431927
GAMEHFHMK	9	Unmodified	_GAMEHFHMK_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2451171875	2	544.244229	1086.47391	0.4454	0.00024241	-0.086045	-4.683E-05	0.35936	0.00019558	544.2447471385702	22.207	0.13251	22.207	22.168	22.3	0					10	4	3	0	0	0	0.070005	1	6504	6504		71.877	6.0743	1	122110			11987	7107	7755	7788	12176	12176					-0.06587283137582745
GAMEHFHMK	9	Unmodified	_GAMEHFHMK_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.244873046875	2	544.244229	1086.47391	1.9704	0.0010724	-1.5316	-0.00083356	0.43877	0.0002388	544.243720063069	22.401	0.45764	22.401	22.253	22.711	0					22	9	4	0	0	0	0.04067	1	7595	7595		82.241	30.905	1	633880			11988	7107	7755	7788	12177	12177					-0.06587283137582745
GAMEHFHMK	9	Unmodified	_GAMEHFHMK_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.244873046875	2	544.244229	1086.47391	1.9829	0.0010792	-0.87098	-0.00047403	1.1119	0.00060516	544.2437937674906	22.378	0.41784	22.378	22.27	22.688	0					14	8	2	0	0	0	0.022525	1	7449	7449		101.6	32.814	1	736760			11989	7107	7755	7788	12178	12178					-0.06587283137582745
GAMGYGYEK	9	Unmodified	_GAMGYGYEK_					0	0	0		nc|ENSG00000175832|P43268-3|ETV4;nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4	nc|ENSG00000175832|P43268-3|ETV4	nc|ENSG00000175832|P43268-3|ETV4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2152404785156	2	488.21566	974.416767	-0.01563	-7.631E-06	-1.032	-0.00050385	-1.0477	-0.00051148	488.2151895688306	24.779	0.15054	24.779	24.677	24.828	0					6	4	2	0	0	0	0.17854	1	7362	7362		64.207	17.441	1	71126			11990	6580	7756	7789	12179	12179					-0.07146427142299672
GAMGYGYEK	9	Unmodified	_GAMGYGYEK_					0	0	0		nc|ENSG00000175832|P43268-3|ETV4;nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4	nc|ENSG00000175832|P43268-3|ETV4	nc|ENSG00000175832|P43268-3|ETV4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.21551513671875	2	488.21566	974.416767	-0.3836	-0.00018728	-0.16338	-7.9766E-05	-0.54698	-0.00026704	488.2155642367468	25.016	0.64538	25.016	24.643	25.289	0					26	15	3	0	0	0	0.055856	1	8498	8498		93.195	29.889	1	534420			11991	6580	7756	7789	12180	12180					-0.07146427142299672
GAMKDIVKK	9	Unmodified	_GAMKDIVKK_					0	0	0		ENSG00000132357|ENST00000254691|CARD6;CARD6|p.M420I|1|0.33|ENSG00000132357|chr5:40852592-40852592|G/T|missense_variant	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2934875488281	2	495.294245	988.573937	0.10526	5.2132E-05	-2.9707	-0.0014713	-2.8654	-0.0014192	495.292751678427	20.759	0.34919	20.759	20.66	21.009	0					11	8	2	0	0	0	0.087861	1	5888	5888		82.241	2.7895	1	219900			11992	3780	7757	7790	12181	12181					0.0791927746786314
GANSLFLEK	9	Unmodified	_GANSLFLEK_					0	0	0		ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.76611328125	2	489.766374	977.518196	-0.45288	-0.0002218	-1.889	-0.00092517	-2.3419	-0.001147	489.7663923840924	34.666	0.5506	34.666	34.443	34.993	0					22	14	2	0	0	0	0.029571	1	12930	12930		109.44	13.248	1	305580			11993	6990	7758	7791	12182	12182					0.028537675519032746
GANSLFLEK	9	Unmodified	_GANSLFLEK_					0	0	0		ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7663269042969	2	489.766374	977.518196	0.60253	0.0002951	-0.21261	-0.00010413	0.38992	0.00019097	489.7667847649903	34.653	0.66544	34.653	34.373	35.038	0					29	18	3	0	0	0	0.0071744	1	13369	13369		148.69	12.422	1	909350			11994	6990	7758	7791	12183	12183					0.028537675519032746
GANSLFLEK	9	Unmodified	_GANSLFLEK_					0	0	0		ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.76593017578125	2	489.766374	977.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.42	1	34.42	33.92	34.92	0								0	0	0	0.014733	1	12180	12180		104.42	8.2331	1				11995	6990	7758	7791	12184	12184					0.028537675519032746
GANSLFLEK	9	Unmodified	_GANSLFLEK_					0	0	0		ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7662658691406	2	489.766374	977.518196	0.77043	0.00037733	0.39181	0.0001919	1.1622	0.00056923	489.7670911957491	34.627	0.60698	34.627	34.474	35.081	0					20	12	3	0	0	0	0.017741	1	13303	13303		125.71	12.301	1	665940			11996	6990	7758	7791	12185	12185					0.028537675519032746
GANSLFLEK	9	Unmodified	_GANSLFLEK_					0	0	0		ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7664489746094	2	489.766374	977.518196	2.6407	0.0012933	-3.055	-0.0014962	-0.41429	-0.00020291	489.76549072307535	34.614	0.70077	34.614	34.212	34.913	0					30	14	3	0	0	0	0.017741	1	13294	13294		125.71	12.301	1	1069900			11997	6990	7758	7791	12186	12186					0.028537675519032746
GANTIFLTK	9	Unmodified	_GANTIFLTK_					0	0	0		CNNM2|p.P452Hfs*7|1|0.48|ENSG00000148842|chr10:102919832-102919832|C/-|frameshift_variant;CNNM2|p.L511*|2|0.33|ENSG00000148842|chr10:102920006-102920006|C/-|frameshift_variant;nc|ENSG00000148842|Q9H8M5-3|CNNM2;CNNM2|p.T824Pfs*14|1|0.29|ENSG00000148842|chr10:103077019-103077019|A/-|frameshift_variant;nc|ENSG00000148842|Q9H8M5-2|CNNM2;ENSG00000148842|ENST00000369878|CNNM2	CNNM2|p.P452Hfs*7|1|0.48|ENSG00000148842|chr10:102919832-102919832|C/-|frameshift_variant	CNNM2|p.P452Hfs*7|1|0.48|ENSG00000148842|chr10:102919832-102919832|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.77679443359375	2	482.776742	963.538931	-0.27789	-0.00013416	0.23816	0.00011498	-0.039732	-1.9181E-05	482.7768505880559	33.455	0.13136	33.455	33.414	33.546	0					6	3	2	0	0	0	0.34452	1	11752	11752		46.457	3.9823	1	205440			11998	571	7759	7792	12187	12187					0.05570357931549097
GANVPTTAK	9	Unmodified	_GANVPTTAK_					0	0	0		nc|ENSG00000083535|Q8WXW3-2|PIBF1;ENSG00000083535|ENST00000326291|PIBF1	nc|ENSG00000083535|Q8WXW3-2|PIBF1	nc|ENSG00000083535|Q8WXW3-2|PIBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.73779296875	2	429.737617	857.460681	1.079	0.00046371	0.0030401	1.3065E-06	1.0821	0.00046501	429.73736411845584	17.183	0.10868	17.183	17.12	17.229	0					5	3	2	0	0	0	0.18416	1	4058	4058		63.534	10.182	1	28575			11999	1696	7760	7793	12188	12188					0.026249253463333844
GANVPTTAK	9	Unmodified	_GANVPTTAK_					0	0	0		nc|ENSG00000083535|Q8WXW3-2|PIBF1;ENSG00000083535|ENST00000326291|PIBF1	nc|ENSG00000083535|Q8WXW3-2|PIBF1	nc|ENSG00000083535|Q8WXW3-2|PIBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.738037109375	2	429.737617	857.460681	0.23231	9.9833E-05	-0.078	-3.352E-05	0.15431	6.6313E-05	429.73759261031944	17.48	0.25385	17.48	17.314	17.568	0					11	6	2	0	0	0	0.10915	1	4930	4930		77.318	15.21	1	239620			12000	1696	7760	7793	12189	12189					0.026249253463333844
GAPGECRLNRQ	11	Unmodified	_GAPGECRLNRQ_					0	0	0			REV__ENST00000393580.2_1_11:73087809-73102263:+|nuORF	REV__ENST00000393580.2_1_11:73087809-73102263:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.8665771484375	3	400.868256	1199.58294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.947	1	14.947	14.447	15.447	0								0	0	0	0.37035	1	3834	3834		42.338	3.5845	1		+		12001	18852	7761	7794	12190	12190					-0.008869809137422635
GAPHLCPNKK	10	Unmodified	_GAPHLCPNKK_					0	0	0		ENST00000353704.2_2_9:35736733-35736859:+|nuORF	ENST00000353704.2_2_9:35736733-35736859:+|nuORF	ENST00000353704.2_2_9:35736733-35736859:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7875366210938	2	532.787118	1063.55968	0.71792	0.0003825	-0.099308	-5.291E-05	0.61861	0.00032959	532.7871823376627	22.597	0.36605	22.597	22.489	22.855	0					11	7	2	0	0	0	0.37692	1	7551	7551		58.782	0.55203	1	1409800			12002	8780	7762	7795	12191	12191					0.03044625039569837
GAPHTIAAR	9	Unmodified	_GAPHTIAAR_					0	0	0		ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2514953613281	2	447.251226	892.487899	0.05289	2.3655E-05	0.19024	8.5085E-05	0.24313	0.00010874	447.25138241474014	14.164	0.13575	14.164	14.076	14.212	0					8	3	3	0	0	0	0.45358	1	3383	3383		37.159	0	1	340960			12003	8516	7763	7796	12192	12192					0.03735453677370515
GAPLASLGCK	10	Carbamidomethyl (C)	_GAPLASLGC(Carbamidomethyl (C))K_	GAPLASLGC(1)K		GAPLASLGC(49)K		0	1	0			REV__ENSG00000185924|ENST00000331238|RTN4RL1	REV__ENSG00000185924|ENST00000331238|RTN4RL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2586364746094	2	487.260402	972.506251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.314	1	34.314	33.814	34.814	0								0	0	0	0.30913	1	12135	12135		49.442	12.282	1		+		12004	17055	7764	7797	12193	12193	605				0.01889827537081601
GAPLKIAK	8	Unmodified	_GAPLKIAK_					0	0	0			REV__nc|ENSG00000011347|O43581|SYT7	REV__nc|ENSG00000011347|O43581|SYT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.2657775878906	2	399.265813	796.517074	0.75702	0.00030225	-0.70923	-0.00028317	0.047798	1.9084E-05	399.26547023872763	13.195	0.19865	13.195	13.098	13.297	0					9	4	3	0	0	0	0.4723	1	3170	3170		62.978	5.1671	1	1167700	+		12005	20921	7765	7798	12194	12194					0.11067597973647025
GAPLLAAP	8	Unmodified	_GAPLLAAP_					0	0	0			REV__ENST00000447098.6_1_1:45291946-45292617:-|nuORF	REV__ENST00000447098.6_1_1:45291946-45292617:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	355.2148132324219	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.733	1	44.733	44.233	45.233	0								0	0	0	1.7419	1	14483	14483		16.705	0	1		+		12006	19284	7766	7799	12195	12195					0.051153606398429474
GAPLRWGIFT	10	Unmodified	_GAPLRWGIFT_					0	0	0		TMTC1|p.E735Kfs*5|1|0.3|ENSG00000133687|chr12:29516454-29516454|T/-|frameshift_variant;ENSG00000133687|ENST00000539277|TMTC1	TMTC1|p.E735Kfs*5|1|0.3|ENSG00000133687|chr12:29516454-29516454|T/-|frameshift_variant	TMTC1|p.E735Kfs*5|1|0.3|ENSG00000133687|chr12:29516454-29516454|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.8115844726562	2	559.311284	1116.60801	-0.45717	-0.0002557	0.85557	0.00047853	0.3984	0.00022283	559.3118000579537	22.067	0.66261	22.067	21.968	22.63	0					47	20	3	0	0	0	0.67098	1	6593	6593		25.574	1.3713	1	893130			12007	3866	7767	7800	12196	12196					0.05437441951130495
GAPQSPYV	8	Unmodified	_GAPQSPYV_					0	0	0			REV__TECPR1|p.R1012Q|1|0.38|ENSG00000205356|chr7:98222415-98222415|C/T|missense_variant	REV__TECPR1|p.R1012Q|1|0.38|ENSG00000205356|chr7:98222415-98222415|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.7073974609375	2	409.705786	817.397018	2.9899	0.001225	0.68167	0.00027929	3.6716	0.0015043	409.70605130364805	23.158	0.36274	23.158	22.905	23.268	0					17	7	3	0	0	0	0.5676	1	7825	7825		53.351	0	1	610690	+		12008	17523	7768	7801	12197	12197					-0.018984350907658154
GAPSGAIL	8	Unmodified	_GAPSGAIL_					0	0	0		ENST00000538137.6_1_18:22930939-22932115:-|nuORF;ENST00000361524.7_1_18:22902141-22932115:-|nuORF;ENST00000583005.5_1_18:22902106-22932121:-|nuORF	ENST00000538137.6_1_18:22930939-22932115:-|nuORF	ENST00000538137.6_1_18:22930939-22932115:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.19879150390625	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.948	1	27.948	27.448	28.448	0								0	0	0	1.7419	1	10183	10183		39.021	7.4426	1				12009	8874	7769	7802	12198	12198					0.025824837431400738
GAPSKTSSL	9	Unmodified	_GAPSKTSSL_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.2294006347656	2	424.229625	846.444697	-1.1219	-0.00047593	0.88561	0.0003757	-0.23626	-0.00010023	424.2299207690187	18.292	0.2695	18.292	18.204	18.473	0					18	10	2	0	0	0	0.42902	1	4744	4744		39.253	10.103	1	253410			12010	7601	7770	7803	12199	12199					0.015332191094330483
GAPSKTSSL	9	Unmodified	_GAPSKTSSL_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.22943115234375	2	424.229625	846.444697	1.0536	0.00044696	-1.4711	-0.0006241	-0.41756	-0.00017714	424.22895856957007	18.514	0.49298	18.514	18.353	18.846	0					19	10	3	0	0	0	0.25716	1	5567	5567		54.776	19.158	1	1121500			12011	7601	7770	7803	12200	12200					0.015332191094330483
GAPSSSPPR	9	Unmodified	_GAPSSSPPR_					0	0	0			REV__ENST00000309909.9_2_12:117466288-117466417:+|nuORF	REV__ENST00000309909.9_2_12:117466288-117466417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.2196960449219	2	428.219591	854.42463	0.17438	7.4671E-05	-0.90192	-0.00038622	-0.72755	-0.00031155	428.21932379111314	16.129	0.23108	16.129	15.951	16.182	0					11	7	2	0	0	0	0.37197	1	3755	3755		44.117	3.3386	1	42649	+		12012	18262	7771	7804	12201	12201					-0.008405318305221954
GAPTPRPL	8	Unmodified	_GAPTPRPL_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;KDM6B|p.P544Sfs*11|1|0.14|ENSG00000132510|chr17:7847912-7847913|-/C|frameshift_variant;KDM6B|p.R513Afs*69|1|0.84|ENSG00000132510|chr17:7847819-7847819|C/-|frameshift_variant;KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant;KDM6B|p.T743Pfs*39|1|0.55|ENSG00000132510|chr17:7848510-7848510|C/-|frameshift_variant;KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant;KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.7376708984375	2	404.73742	807.460287	0.41059	0.00016618	-0.056161	-2.2731E-05	0.35443	0.00014345	404.7373248421924	17.475	0.30008	17.475	17.234	17.534	0					11	6	3	0	0	0	0.55361	1	5211	5211		54.765	0	1	141210			12013	3794	7772	7805	12202	12202					0.048855504171342545
GAQGGPCP	8	Unmodified	_GAQGGPCP_					0	0	0		ENST00000396076.5_1_12:21810468-21810579:-|nuORF	ENST00000396076.5_1_12:21810468-21810579:-|nuORF	ENST00000396076.5_1_12:21810468-21810579:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.65081787109375	2	343.649956	685.285359	0.48514	0.00016672	0.067613	2.3235E-05	0.55275	0.00018995	343.65072119836117	51.908	0.22379	51.908	51.819	52.043	0					21	12	2	0	0	0	0.7914	1	18501	18501		14.664	0.88877	1	575580			12014	9203	7773	7806	12203	12203					-0.06987192719554969
GAQKWQNQIKK	11	Unmodified	_GAQKWQNQIKK_					0	0	0			REV__nc|ENSG00000134240|P54868-2|HMGCS2	REV__nc|ENSG00000134240|P54868-2|HMGCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.5855407714844	3	443.585966	1327.73607	-0.49078	-0.0002177	-0.19109	-8.4764E-05	-0.68186	-0.00030247	443.5859377167624	16.359	0.56094	16.359	16.251	16.812	0					23	11	4	0	0	0	0.65907	1	4499	4499		27.644	0	1	3774900	+		12015	14731	7774	7807	12204	12204					0.08530957474340539
GARAAPLY	8	Unmodified	_GARAAPLY_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.7297058105469	2	409.729595	817.444637	-1.4178	-0.00058092	1.6887	0.0006919	0.27085	0.00011098	409.7302417592282	16.474	0.16365	16.474	16.397	16.56	0					9	4	3	0	0	0	0.67475	1	3970	3970		37.028	1.8278	1	533970	+		12016	14957	7775	7808	12205	12205					0.028612639000812123
GARAGPSL	8	Unmodified	_GARAGPSL_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.7058410644531	2	364.70612	727.397687	0.095042	3.4662E-05	-0.093232	-3.4002E-05	0.0018096	6.5998E-07	364.70605802295654	18.83	0.5195	18.83	18.646	19.166	0					28	15	2	0	0	0	0.64096	1	4710	4710		42.474	1.9018	1	336850	+		12017	13775	7776	7809	12206	12206					0.02308404348957538
GARARWAAP	9	Unmodified	_GARARWAAP_					0	0	0			REV__ENST00000502873.5_1_4:26585743-26755545:+|nuORF	REV__ENST00000502873.5_1_4:26585743-26755545:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2638854980469	2	478.264668	954.514782	-1.4558	-0.00069627	-0.24949	-0.00011932	-1.7053	-0.00081559	478.2645951584633	25.315	0.44909	25.315	25.03	25.479	0					29	15	4	0	0	0	0.51817	1	7839	7839		30.504	30.504	1	877040	+		12018	19811	7777	7810	12207	12207					0.03570562288552992
GARCVGNP	8	Unmodified	_GARCVGNP_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.18927001953125	2	387.18978	772.365007	-2.1817	-0.00084472	1.6003	0.0006196	-0.58142	-0.00022512	387.1902984601574	17.081	0.10606	17.081	17.022	17.128	0					6	3	2	0	0	0	0.74117	1	4190	4190		28.254	0	1	47969	+		12019	21208	7778	7811	12208	12208					-0.030281260455467418
GARGEHGPPH	10	Unmodified	_GARGEHGPPH_					0	0	0			REV__ENST00000468403.1_1_1:153751697-153752222:+|nuORF	REV__ENST00000468403.1_1_1:153751697-153752222:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.8345031738281	3	338.833652	1013.47913	3.0183	0.0010227	-0.45192	-0.00015313	2.5663	0.00086956	338.8334670129766	20.917	0.31435	20.917	20.86	21.174	0					13	6	3	0	0	0	0.60281	1	6734	6734		33.922	33.922	1	1413700	+		12020	19440	7779	7812	12209	12209					-0.027075199590967713
GARGPRHK	8	Unmodified	_GARGPRHK_					0	0	0			REV__ENST00000529681.5_1_11:1263596-1263746:+|nuORF	REV__ENST00000529681.5_1_11:1263596-1263746:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.7568054199219	2	439.75701	877.499467	0.60486	0.00026599	-0.98861	-0.00043475	-0.38375	-0.00016876	439.7565414109172	12.674	0.13324	12.674	12.588	12.721	0					5	3	2	0	0	0	0.6282	1	2922	2922		44.531	44.531	1	663710	+		12021	20034	7780	7813	12210	12210					0.05581695491366645
GARGPRHK	8	Unmodified	_GARGPRHK_					0	0	0			REV__ENST00000529681.5_1_11:1263596-1263746:+|nuORF	REV__ENST00000529681.5_1_11:1263596-1263746:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.7574462890625	2	439.75701	877.499467	0.69245	0.00030451	-0.5156	-0.00022674	0.17686	7.7773E-05	439.75682710848054	12.652	0.089555	12.652	12.571	12.66	0					4	2	2	0	0	0	0.6282	1	2737	2737		44.531	44.531	1	165140	+		12022	20034	7780	7813	12211	12211					0.05581695491366645
GARLANHRI	9	Unmodified	_GARLANHRI_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5346984863281	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.178	1	35.178	34.678	35.678	0								0	0	0	0.35507	1	11893	11893		18.262	0	1		+		12023	12887	7781	7814	12212	12212					0.0754192272564751
GARLANHRI	9	Unmodified	_GARLANHRI_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5340270996094	3	336.533425	1006.57845	0.53459	0.00017991	1.2502	0.00042073	1.7848	0.00060064	336.53446196098747	18.81	2.0865	18.81	18.677	20.764	0					123	42	5	0	0	0	0.57706	1	6166	6166		18.262	0	1	149780000	+		12024	12887	7781	7814	12213	12213					0.0754192272564751
GARLANHRI	9	Unmodified	_GARLANHRI_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2966003417969	2	504.296499	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.205	1	43.205	42.705	43.705	0								0	0	0	0.28996	1	17286	17286		37.159	1.5408	1		+		12025	12887	7781	7814	12214	12214					0.0754192272564751
GARLANHRI	9	Unmodified	_GARLANHRI_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341796875	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.223	1	44.223	43.723	44.723	0								0	0	0	0.35507	1	17719	17719		18.262	0.79408	1		+		12026	12887	7781	7814	12215	12215					0.0754192272564751
GARLANHRI	9	Unmodified	_GARLANHRI_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.424	1	52.424	51.924	52.924	0								0	0	0	0.37496	1	20362	20362		19.104	3.0967	1		+		12027	12887	7781	7814	12216	12216					0.0754192272564751
GARPAGFL	8	Unmodified	_GARPAGFL_					0	0	0			REV__ENST00000528307.5_1_11:14539460-14541880:-|nuORF	REV__ENST00000528307.5_1_11:14539460-14541880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.72412109375	2	394.724313	787.434072	0.41902	0.0001654	-0.6595	-0.00026032	-0.24048	-9.4923E-05	394.7240071180388	16.949	0.85514	16.949	16.828	17.683	0					37	17	3	0	0	0	0.72892	1	4829	4829		29.842	8.1392	1	313480	+		12028	20018	7782	7815	12217	12217					0.03185281245657734
GARPHPGV	8	Unmodified	_GARPHPGV_					0	0	0			REV__ENST00000551451.5_1_12:29302213-29446237:+|nuORF	REV__ENST00000551451.5_1_12:29302213-29446237:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.718994140625	2	395.719562	789.42457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.083	1	16.083	15.583	16.583	0								0	0	0	1.7419	1	4381	4381		44.531	2.1349	1		+		12029	20176	7783	7816	12218	12218					0.02143512960140015
GARPVPGP	8	Unmodified	_GARPVPGP_					0	0	0		ENST00000278935.7_2_11:117283502-117283925:+|nuORF	ENST00000278935.7_2_11:117283502-117283925:+|nuORF	ENST00000278935.7_2_11:117283502-117283925:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	375.7162780761719	2	375.716488	749.418422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.739	1	17.739	17.239	18.239	0								0	0	0	1.7419	1	5322	5322		15.636	0	1				12030	8403	7784	7817	12219	12219					0.0336899472862342
GARQKRKK	8	Unmodified	_GARQKRKK_					0	0	0			REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.54632568359375	3	324.545553	970.614831	1.7207	0.00055844	0.6488	0.00021057	2.3695	0.00076901	324.54578095338496	22.231	0.61724	22.231	22.121	22.739	0					27	12	5	0	0	0	0.46905	1	7371	7371		63.306	11.971	1	12028000	+		12031	12347	7785	7818	12220	12220					0.12834799622373794
GARQKRKK	8	Unmodified	_GARQKRKK_					0	0	0			REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.54638671875	3	324.545553	970.614831	2.9962	0.00097242	-0.29378	-9.5344E-05	2.7025	0.00087707	324.54546640177847	22.262	0.46602	22.262	22.156	22.622	0					19	9	4	0	0	0	0.3961	1	7369	7369		71.296	14.575	1	7908800	+		12032	12347	7785	7818	12221	12221					0.12834799622373794
GARSGSVPRE	10	Unmodified	_GARSGSVPRE_					0	0	0			REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2678527832031	2	508.267604	1014.52066	1.8062	0.00091804	-1.3174	-0.00066961	0.48879	0.00024844	508.2670237553328	16.048	0.13283	16.048	15.987	16.12	0					9	5	2	0	0	0	0.47859	1	3588	3588		47.657	1.2006	1	159790	+		12033	20372	7786	7819	12222	12222					0.013976160095694468
GASDVVLYK	9	Unmodified	_GASDVVLYK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.26104736328125	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.637	1	29.637	29.137	30.137	0								0	0	0	0.14881	1	9375	9375		60.118	2.307	1				12034	2962	7787	7820	12223	12223					0.030063651776117695
GASDVVLYK	9	Unmodified	_GASDVVLYK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2604675292969	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.921	1	29.921	29.421	30.421	0								0	0	0	0.0023244	1	10735	10735		118.74	25.548	1				12035	2962	7787	7820	12224	12224					0.030063651776117695
GASDVVLYK	9	Unmodified	_GASDVVLYK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2605895996094	2	476.260925	950.507297	-1.5291	-0.00072823	0.35899	0.00017097	-1.1701	-0.00055726	476.261045195345	29.663	0.19199	29.663	29.592	29.784	0					11	7	2	0	0	0	0.35021	1	9667	9667		45.972	8.1607	1	100850			12036	2962	7787	7820	12225	12225					0.030063651776117695
GASDVVLYK	9	Unmodified	_GASDVVLYK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2608947753906	2	476.260925	950.507297	0.6309	0.00030047	-2.8631	-0.0013636	-2.2322	-0.0010631	476.2604682340715	29.922	0.49805	29.922	29.65	30.148	0					17	10	3	0	0	0	0.032052	1	11134	11134		107.01	24.702	1	738630			12037	2962	7787	7820	12226	12226					0.030063651776117695
GASDVVLYK	9	Unmodified	_GASDVVLYK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.260986328125	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.685	1	29.685	29.185	30.185	0								0	0	0	0.072369	1	10018	10018		79.713	22.992	1				12038	2962	7787	7820	12227	12227					0.030063651776117695
GASDVVLYK	9	Unmodified	_GASDVVLYK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2607727050781	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.872	1	29.872	29.372	30.372	0								0	0	0	0.0537	1	10995	10995		85.161	29.657	1				12039	2962	7787	7820	12228	12228					0.030063651776117695
GASDVVLYK	9	Unmodified	_GASDVVLYK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2604675292969	2	476.260925	950.507297	2.2747	0.0010834	-3.7615	-0.0017915	-1.4868	-0.0007081	476.25926378260965	29.87	0.16555	29.87	29.764	29.93	0					8	3	3	0	0	0	0.1424	1	11009	11009		69.628	14.123	1	388730			12040	2962	7787	7820	12229	12229					0.030063651776117695
GASEILLKK	9	Unmodified	_GASEILLKK_					0	0	0		nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.8000793457031	2	479.800217	957.585882	0.024543	1.1776E-05	-0.75082	-0.00036024	-0.72628	-0.00034847	479.79974958110927	23.056	0.18411	23.056	22.962	23.146	0					14	6	3	0	0	0	0.0061615	1	6607	6607		153.04	0	1	470050			12041	1416	7788	7821	12230	12230					0.1053921748269886
GASEILLKK	9	Unmodified	_GASEILLKK_					0	0	0		nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7998962402344	2	479.800217	957.585882	-0.22815	-0.00010947	-0.23029	-0.00011049	-0.45844	-0.00021996	479.80013461442996	23.12	0.16068	23.12	23.018	23.179	0					10	5	3	0	0	0	0.10915	1	6892	6892		77.318	0	1	124130			12042	1416	7788	7821	12231	12231					0.1053921748269886
GASEILLKK	9	Unmodified	_GASEILLKK_					0	0	0		nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7997131347656	2	479.800217	957.585882	-2.9263	-0.001404	2.2337	0.0010717	-0.69262	-0.00033232	479.8011000542057	23.159	0.18738	23.159	23.064	23.251	0					10	4	3	0	0	0	0.0033339	1	7025	7025		166.68	0	1	412550			12043	1416	7788	7821	12232	12232					0.1053921748269886
GASGEVPVGAL	11	Unmodified	_GASGEVPVGAL_					0	0	0		ENST00000525829.1_1_8:12219536-12219971:+|nuORF	ENST00000525829.1_1_8:12219536-12219971:+|nuORF	ENST00000525829.1_1_8:12219536-12219971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.755859375	2	478.756007	955.497461	-0.029384	-1.4068E-05	-0.63713	-0.00030503	-0.66652	-0.0003191	478.755758149322	33.708	0.17733	33.708	33.631	33.808	0					10	7	2	0	0	0	0.61618	1	10966	10966		35.618	2.1027	1	92233			12044	10366	7789	7822	12233	12233					0.01793177172248761
GASGSFKLNK	10	Unmodified	_GASGSFKLNK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.77703857421875	2	504.777274	1007.53999	0.10674	5.388E-05	-0.12271	-6.1942E-05	-0.015971	-8.062E-06	504.7772324776018	21.931	0.31112	21.931	21.825	22.136	0					9	6	2	0	0	0	0.0068485	1	7358	7358		159.28	41.465	1	1927600			12045	7222;6080;3386;7010	7790	7823	12234	12234					0.03652572300461543
GASGSFKLNK	10	Unmodified	_GASGSFKLNK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7776184082031	2	504.777274	1007.53999	0.036028	1.8186E-05	-0.2096	-0.0001058	-0.17357	-8.7616E-05	504.77713761868733	21.828	0.10142	21.828	21.736	21.837	0					4	2	2	0	0	0	0.041742	1	6389	6389		112.11	40.812	1	166960			12046	7222;6080;3386;7010	7790	7823	12235	12235					0.03652572300461543
GASGSFKLNK	10	Unmodified	_GASGSFKLNK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7771911621094	2	504.777274	1007.53999	-0.3487	-0.00017601	0.70912	0.00035795	0.36042	0.00018193	504.7777615880532	21.945	0.31572	21.945	21.84	22.156	0					12	6	3	0	0	0	0.011271	1	7237	7237		138.06	36.81	1	2325600			12047	7222;6080;3386;7010	7790	7823	12236	12236					0.03652572300461543
GASKSIKV	8	Unmodified	_GASKSIKV_					0	0	0			REV__ENSG00000136813|ENST00000684092|ECPAS	REV__ENSG00000136813|ENST00000684092|ECPAS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.2449035644531	2	395.245078	788.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.703	1	11.703	11.203	12.203	0								0	0	0	1.7419	1	2276	2276		57.811	3.035	1		+		12048	14880	7791	7824	12237	12237					0.07290417214323952
GASKTSHQGR	10	Unmodified	_GASKTSHQGR_					0	0	0		ENST00000583245.5_1_17:46019279-46019411:+|nuORF	ENST00000583245.5_1_17:46019279-46019411:+|nuORF	ENST00000583245.5_1_17:46019279-46019411:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7672729492188	2	514.765229	1027.5159	1.4833	0.00076356	2.7867	0.0014345	4.27	0.0021981	514.7665758087691	12.876	0.20434	12.876	12.773	12.978	0					7	4	2	0	0	0	0.56931	1	2860	2860		37.812	0.65241	1	212360			12049	10881	7792	7825	12238	12238					0.0032473186681727384
GASLADIMAK	10	Unmodified	_GASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7604064941406	2	488.760235	975.505917	-0.089461	-4.3725E-05	0.1548	7.5661E-05	0.065342	3.1937E-05	488.76001751929704	38.239	0.14571	38.239	38.166	38.312	0					11	8	2	0	0	0	0.39827	1	12473	12473		56.434	1.6575	1	46966			12050	2846	7793	7826	12239	12239					0.017184078171908368
GASLADIMAK	10	Unmodified	_GASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.76031494140625	2	488.760235	975.505917	0.61303	0.00029962	-0.79445	-0.00038829	-0.18142	-8.8672E-05	488.760041175559	38.534	0.26769	38.534	38.445	38.713	0					24	9	4	0	0	0	0.041742	1	15114	15114		112.11	33.843	1	515020			12051	2846	7793	7826	12240	12240					0.017184078171908368
GASLADIMAK	10	Unmodified	_GASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7599792480469	2	488.760235	975.505917	-0.17813	-8.7065E-05	-0.17712	-8.657E-05	-0.35526	-0.00017364	488.76022440738683	38.299	0.16953	38.299	38.237	38.407	0					12	8	2	0	0	0	0.27065	1	13699	13699		70.816	9.8443	1	64868			12052	2846	7793	7826	12241	12241					0.017184078171908368
GASLADIMAK	10	Unmodified	_GASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.75994873046875	2	488.760235	975.505917	0.78474	0.00038355	-1.6088	-0.0007863	-0.82404	-0.00040276	488.7598655644011	38.485	0.34445	38.485	38.35	38.695	0					17	7	4	0	0	0	0.041742	1	15125	15125		112.11	29.357	1	560300			12053	2846	7793	7826	12242	12242					0.017184078171908368
GASLADIMAK	10	Unmodified	_GASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.76007080078125	2	488.760235	975.505917	2.6074	0.0012744	-1.4259	-0.00069691	1.1815	0.00057746	488.75902494681196	38.474	0.34204	38.474	38.235	38.577	0					14	7	3	0	0	0	0.20981	1	15165	15165		78.264	18.146	1	319090			12054	2846	7793	7826	12243	12243					0.017184078171908368
GASNLKISRMD	11	Unmodified	_GASNLKISRMD_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2;NFKB2|p.Y294Ifs*4|1|0.29|ENSG00000077150|chr10:102398406-102398406|C/-|frameshift_variant	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	397.54010009765625	3	397.876529	1190.60776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.338	1	17.338	16.838	17.838	0								0	0	0	0.42918	1	4301	4301		30.569	3.5215	1				12055	1576	7794	7827	12244	12244					0.020076541689832084
GASSFKLKN	9	Unmodified	_GASSFKLKN_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2681884765625	2	476.266542	950.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.819	1	19.819	19.319	20.319	0								0	0	0	0.27939	1	5433	5433		39.253	0.44669	1				12056	4386	7795	7828	12245	12245					0.04129187271757928
GASSVEQL	8	Unmodified	_GASSVEQL_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;ENST00000486253.1_1_15:91478554-91479244:+|nuORF;ENST00000557212.5_1_15:91478554-91479518:+|nuORF	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.70050048828125	2	395.7007	789.386848	0.10301	4.076E-05	-0.16903	-6.6884E-05	-0.066019	-2.6124E-05	395.70057013631447	18.683	0.19616	18.683	18.611	18.807	0					9	4	3	0	0	0	0.5676	1	5807	5807		53.351	5.4358	1	230090			12057	4396	7796	7829	12246	12246					-0.01627042815994173
GASVPLVSI	9	Unmodified	_GASVPLVSI_					0	0	0			REV__ENST00000468090.5_1_21:45181177-45181723:+|nuORF	REV__ENST00000468090.5_1_21:45181177-45181723:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7515869140625	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.588	1	45.588	45.088	46.088	0								0	0	0	0.37821	1	18262	18262		17.365	0.89182	1		+		12058	19436	7797	7830	12247	12247					0.06383284011531032
GATASRLPWKL	11	Unmodified	_GATASRLPWKL_					0	0	0		ENST00000419804.5_3_X:152937579-152953009:-|nuORF	ENST00000419804.5_3_X:152937579-152953009:-|nuORF	ENST00000419804.5_3_X:152937579-152953009:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.5677490234375	3	400.568024	1198.68224	0.064794	2.5954E-05	-0.36579	-0.00014652	-0.30099	-0.00012057	400.5678586936404	25.943	0.83917	25.943	25.755	26.594	0					24	15	3	0	0	0	0.4771	1	9337	9337		45.908	9.5905	1	320450			12059	9387	7798	7831	12248	12248					0.0908478504265986
GATHFPNK	8	Unmodified	_GATHFPNK_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2262268066406	2	436.224677	870.434801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.772	1	17.772	17.272	18.272	0								0	0	0	1.7419	1	5190	5190		33.516	0	1		+		12060	16026	7799	7832	12249	12249					-0.005599241053005244
GATLLIMM	8	Unmodified	_GATLLIMM_					0	0	0			REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant	REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2322692871094	2	425.232267	848.449982	0.89754	0.00038166	-0.96534	-0.00041049	-0.0678	-2.8831E-05	425.2318429842848	12.363	0.30322	12.363	12.18	12.483	0					13	7	3	0	0	0	0.72892	1	2788	2788		29.842	29.842	1	133270	+		12061	14565	7800	7833	12250	12250					0.0196948337604681
GATLPLPLQK	10	Unmodified	_GATLPLPLQK_					0	0	0			REV__ENST00000561069.5_1_15:29409547-29409850:+|nuORF	REV__ENST00000561069.5_1_15:29409547-29409850:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.5489807128906	3	346.54997	1036.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.236	1	14.236	13.736	14.736	0								0	0	0	0.3805	1	3495	3495		36.447	7.2972	1		+		12062	20291	7801	7834	12251	12251					0.11123192891068356
GATPEVLQ	8	Unmodified	_GATPEVLQ_					0	0	0		nc|ENSG00000100299|P15289-2|ARSA;nc|ENSG00000100299|P15289|ARSA;ENSG00000100299|ENST00000216124|ARSA	nc|ENSG00000100299|P15289-2|ARSA	nc|ENSG00000100299|P15289-2|ARSA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.71856689453125	2	407.718893	813.423233	-0.12848	-5.2386E-05	-0.11819	-4.8189E-05	-0.24668	-0.00010057	407.7187167147297	14.922	0.078308	14.922	14.875	14.953	0					6	3	2	0	0	0	0.59411	1	3146	3146		50.025	0	1	188580			12063	1997	7802	7835	12252	12252					0.009058340807087006
GATPLKQEPL	10	Unmodified	_GATPLKQEPL_					0	0	0			REV__ZNF831|p.S306L|1|0.46|ENSG00000124203|chr20:59191936-59191936|C/T|missense_variant	REV__ZNF831|p.S306L|1|0.46|ENSG00000124203|chr20:59191936-59191936|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.8062133789062	2	527.300581	1052.58661	3.4742	0.001832	2.3684	0.0012489	5.8427	0.0030808	527.8042669585826	19.515	0.31449	19.515	19.409	19.723	0					15	6	4	0	0	0	0.44601	1	6057	6057		51.193	6.8155	1	5570500	+		12064	22336	7803	7836	12253	12253					0.062420121317472876
GATPPTGP	8	Unmodified	_GATPPTGP_					0	0	0			REV__GPR149|p.I582Nfs*6|1|0.33|ENSG00000174948|chr3:154338150-154338151|-/T|frameshift_variant	REV__GPR149|p.I582Nfs*6|1|0.33|ENSG00000174948|chr3:154338150-154338151|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.1784973144531	2	349.179404	696.344254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.344	1	45.344	44.844	45.844	0								0	0	0	1.7419	1	14611	14611		33.516	8.0654	1		+		12065	16594	7804	7837	12254	12254					-0.016063931535654774
GATSAPRKTQ	10	Unmodified	_GATSAPRKTQ_					0	0	0			REV__ENSG00000132613|ENST00000338779|MTSS2	REV__ENSG00000132613|ENST00000338779|MTSS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.77777099609375	2	508.777805	1015.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.982	1	11.982	11.482	12.482	0								0	0	0	0.097225	1	2587	2587		80.455	0.74203	1		+		12066	14669	7805	7838	12255	12255					0.03390786669365298
GATVLSKN	8	Unmodified	_GATVLSKN_					0	0	0			REV__FRMPD3|p.S1014Afs*18|1|0.32|ENSG00000147234|chrX:107600973-107600973|C/-|frameshift_variant	REV__FRMPD3|p.S1014Afs*18|1|0.32|ENSG00000147234|chrX:107600973-107600973|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.22674560546875	2	395.226885	788.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.209	1	14.209	13.709	14.709	0								0	0	0	1.7419	1	3413	3413		23.042	2.0956	1		+		12067	15341	7806	7839	12256	12256					0.03653540317611714
GATVPPKE	8	Unmodified	_GATVPPKE_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;KIAA1217|p.N1661Tfs*23|1|0.07|ENSG00000120549|chr10:24544247-24544247|A/-|frameshift_variant;KIAA1217|p.Q1199Kfs*12|1|0.25|ENSG00000120549|chr10:24542749-24542749|C/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.7215576171875	2	399.721436	797.428318	-0.3558	-0.00014222	0.65453	0.00026163	0.29873	0.00011941	399.7216649262601	16.003	0.22323	16.003	15.926	16.149	0					9	5	3	0	0	0	0.44433	1	4247	4247		65.803	5.5092	1	624970			12068	3177	7807	7840	12257	12257					0.021501379433289003
GATVSGPPL	9	Unmodified	_GATVSGPPL_					0	0	0			REV__ENST00000588922.5_1_19:9929234-9929667:-|nuORF	REV__ENST00000588922.5_1_19:9929234-9929667:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.7213439941406	2	399.721436	797.428318	-0.087127	-3.4826E-05	-0.26791	-0.00010709	-0.35503	-0.00014191	399.72121617782443	15.686	0.14172	15.686	15.617	15.759	0					12	6	3	0	0	0	0.41354	1	3451	3451		40.573	7.057	1	243650	+		12069	20504	7808	7841	12258	12258					0.021501379433289003
GAVATVAPSNH	11	Unmodified	_GAVATVAPSNH_					0	0	0			REV__SETD1B|p.S561Rfs*47|1|0.46|ENSG00000139718|chr12:121810620-121810620|C/-|frameshift_variant	REV__SETD1B|p.S561Rfs*47|1|0.46|ENSG00000139718|chr12:121810620-121810620|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2649536132812	2	512.26453	1022.51451	-1.711	-0.00087647	2.3238	0.0011904	0.61283	0.00031393	512.2657814773503	19.268	0.13443	19.268	19.221	19.356	0					5	3	2	0	0	0	0.53842	1	5209	5209		41.427	3.6151	1	200020	+		12070	15043	7809	7842	12259	12259					0.004150977780341236
GAVDGDIT	8	Unmodified	_GAVDGDIT_					0	0	0		USH2A|p.T701A|1|0.43|ENSG00000042781|chr1:216250969-216250969|T/C|missense_variant	USH2A|p.T701A|1|0.43|ENSG00000042781|chr1:216250969-216250969|T/C|missense_variant	USH2A|p.T701A|1|0.43|ENSG00000042781|chr1:216250969-216250969|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.17926025390625	2	374.179601	746.344648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.554	1	51.554	51.054	52.054	0								0	0	0	1.7419	1	18398	18398		20.482	1.1219	1				12071	23094	7810	7843	12260	12260					-0.03867018224389085
GAVEVKVGSR	10	Unmodified	_GAVEVKVGSR_					0	0	0			REV__ENST00000486335.1_1_2:74702161-74702799:-|nuORF	REV__ENST00000486335.1_1_2:74702161-74702799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.5293273925781	3	334.529458	1000.56654	0.51923	0.0001737	-0.61898	-0.00020707	-0.099755	-3.3371E-05	334.52932094401933	15.529	1.2651	15.529	15.397	16.662	0					63	30	5	0	0	0	0.59277	1	4228	4228		35.152	2.4015	1	51168000	+		12072	19664	7811	7844	12261	12261					0.06628261191815454
GAVIEPAGR	9	Unmodified	_GAVIEPAGR_					0	0	0			REV__ENST00000328560.12_2_3:130613343-130613580:+|nuORF	REV__ENST00000328560.12_2_3:130613343-130613580:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2456359863281	2	435.245609	868.476666	0.67262	0.00029276	-0.90157	-0.00039241	-0.22895	-9.9651E-05	435.2452759348175	16.784	0.16543	16.784	16.705	16.87	0					9	4	3	0	0	0	0.25109	1	4649	4649		55.504	0.72789	1	812590	+		12073	18369	7812	7845	12262	12262					0.037166315832337204
GAVKPPPNK	9	Unmodified	_GAVKPPPNK_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2725524902344	2	454.271627	906.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.012	1	14.012	13.512	14.512	0								0	0	0	0.14517	1	2967	2967		60.972	20.399	1				12074	6017	7813	7846	12263	12263					0.07169794996980272
GAVKPPPNK	9	Unmodified	_GAVKPPPNK_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.271728515625	2	454.271627	906.528701	-0.47425	-0.00021544	-0.04707	-2.1382E-05	-0.52132	-0.00023682	454.27161674579224	14.309	0.87352	14.309	13.857	14.731	0					34	18	3	0	0	0	0.011305	1	3671	3671		138.24	66.365	1	484970			12075	6017	7813	7846	12264	12264					0.07169794996980272
GAVLNPHEA	9	Unmodified	_GAVLNPHEA_					0	0	0		RAMP2|p.I154Hfs*16|1|0.28|ENSG00000131477|chr17:42762778-42762779|-/C|frameshift_variant;ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	RAMP2|p.I154Hfs*16|1|0.28|ENSG00000131477|chr17:42762778-42762779|-/C|frameshift_variant	RAMP2|p.I154Hfs*16|1|0.28|ENSG00000131477|chr17:42762778-42762779|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2349548339844	2	454.235242	906.45593	-0.55879	-0.00025382	-0.35265	-0.00016019	-0.91144	-0.00041401	454.2350918120353	14.415	0.25032	14.415	14.327	14.578	0					8	6	2	0	0	0	0.32741	1	3513	3513		47.916	0	1	363670			12076	3723	7814	7847	12265	12265					-0.0010395879644420347
GAVNSVKK	8	Unmodified	_GAVNSVKK_					0	0	0			REV__BICD2|p.D511N|1|0.21|ENSG00000185963|chr9:92719114-92719114|C/T|missense_variant	REV__BICD2|p.D511N|1|0.21|ENSG00000185963|chr9:92719114-92719114|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.74267578125	2	401.742702	801.470852	-0.40939	-0.00016447	0.33305	0.0001338	-0.07634	-3.0669E-05	401.7428232634204	16.016	0.22323	16.016	15.926	16.149	0					11	5	3	0	0	0	0.5676	1	4263	4263		53.351	7.3995	1	753200	+		12077	12285	7815	7848	12266	12266					0.06217533071571779
GAVPPLSP	8	Unmodified	_GAVPPLSP_					0	0	0			REV__ENST00000514480.1_2_4:76439745-76440060:+|nuORF	REV__ENST00000514480.1_2_4:76439745-76440060:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.2121276855469	2	369.213246	736.41194	-1.012	-0.00037365	-2.2694	-0.0008379	-3.2814	-0.0012116	369.21243576456726	41.11	0.11895	41.11	41.032	41.151	0					9	7	2	0	0	0	0.66238	1	13690	13690		39.021	0	1	29861	+		12078	19904	7816	7849	12267	12267					0.03319056777240803
GAVQDIERPI	10	Unmodified	_GAVQDIERPI_					0	0	0			REV__ENSG00000204361|ENST00000389586|NXPE2	REV__ENSG00000204361|ENST00000389586|NXPE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	366.53643798828125	3	366.536501	1096.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.196	1	17.196	16.696	17.696	0								0	0	0	0.41137	1	4264	4264		27.047	2.5281	1		+		12079	17479	7817	7850	12268	12268					0.04324226500671102
GAVRSVKET	9	Unmodified	_GAVRSVKET_					0	0	0		ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.772705078125	2	473.769448	945.524344	3.6793	0.0017431	3.0391	0.0014398	6.7183	0.0031829	473.77106021414806	23.174	0.10944	23.174	23.126	23.236	0					5	3	2	0	0	0	0.41113	1	6928	6928		40.778	4.3314	1	58917			12080	1835	7818	7851	12269	12269					0.049402857834252245
GAVRTRGRPL	10	Unmodified	_GAVRTRGRPL_					0	0	0		ENST00000564063.1_1_1:108742589-108743207:+|nuORF	ENST00000564063.1_1_1:108742589-108743207:+|nuORF	ENST00000564063.1_1_1:108742589-108743207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.5571594238281	3	361.55623	1081.64686	3.1146	0.0011261	-0.53381	-0.000193	2.5808	0.00093311	361.5560112876101	27.229	0.57487	27.229	27.07	27.645	0					27	11	3	0	0	0	0.50881	1	9735	9735		44.377	7.9304	1	901310			12081	10737	7819	7852	12270	12270					0.1093016730551426
GAVSRPRARGA	11	Unmodified	_GAVSRPRARGA_					0	0	0		ENST00000398846.5_1_11:64808482-64808530:+|nuORF	ENST00000398846.5_1_11:64808482-64808530:+|nuORF	ENST00000398846.5_1_11:64808482-64808530:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.54852294921875	3	366.547734	1096.62137	3.1593	0.001158	-1.1388	-0.00041741	2.0205	0.00074062	366.5473016004398	13.462	0.48252	13.462	13.366	13.848	0					14	10	2	0	0	0	0.64562	1	3139	3139		42.338	12.02	1	413000			12082	9234	7820	7853	12271	12271					0.0769269278309821
GAWSLFVLGA	10	Unmodified	_GAWSLFVLGA_					0	0	0			REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	340.853759765625	3	340.855282	1019.54402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.88	1	20.88	20.38	21.38	0								0	0	0	0.4044	1	5955	5955		29.17	2.1227	1		+		12083	20078	7821	7854	12272	12272					0.03502661794186679
GAWSPGGLK	9	Unmodified	_GAWSPGGLK_					0	0	0		ENST00000355827.8_1_X:95939790-95940039:+|nuORF	ENST00000355827.8_1_X:95939790-95940039:+|nuORF	ENST00000355827.8_1_X:95939790-95940039:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2372131347656	2	436.734877	871.455202	2.6706	0.0011663	0.023685	1.0344E-05	2.6943	0.0011767	436.7351757984318	20.338	0.51748	20.338	20.011	20.528	0					28	10	4	0	0	0	0.45358	1	6401	6401		37.159	0.13063	1	1092000			12084	8804	7822	7855	12273	12273					0.01433246554518064
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.74798583984375	2	507.748182	1013.48181	-0.093322	-4.7384E-05	-0.03115	-1.5817E-05	-0.12447	-6.3201E-05	507.7479928145074	20.696	0.25534	20.696	20.624	20.879	0					18	9	3	0	0	0	0.034688	1	5587	5587		88.177	31.456	1	336840			12085	7353	7823	7856	12274	12274					-0.024391093448230095
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.83416748046875	3	338.834547	1013.48181	0.22921	7.7665E-05	-0.64209	-0.00021756	-0.41288	-0.0001399	338.8342127046302	20.699	0.14497	20.699	20.624	20.769	0					9	4	3	0	0	0	0.48389	1	5590	5590		34.173	7.4796	1	128060			12086	7353	7823	7856	12275	12275					-0.024391093448230095
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.74822998046875	2	507.748182	1013.48181	-0.029123	-1.4787E-05	0.41172	0.00020905	0.3826	0.00019426	507.7481417549977	20.98	0.68444	20.98	20.88	21.564	0					33	16	4	0	0	0	0.040209	1	6615	6615		72.879	0	1	1937600			12087	7353	7823	7856	12276	12276					-0.024391093448230095
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.8345947265625	3	338.834547	1013.48181	0.51307	0.00017384	-0.64029	-0.00021695	-0.12722	-4.3108E-05	338.8343765308304	21.005	0.29543	21.005	20.88	21.175	0					18	7	3	0	0	0	0.4966	1	6616	6616		32.812	2.4947	1	1532100			12088	7353	7823	7856	12277	12277					-0.024391093448230095
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7480773925781	2	507.748182	1013.48181	-0.51757	-0.0002628	0.76089	0.00038634	0.24331	0.00012354	507.74839638366456	20.717	0.19257	20.717	20.649	20.841	0					11	6	2	0	0	0	0.034688	1	5824	5824		88.177	31.456	1	434570			12089	7353	7823	7856	12278	12278					-0.024391093448230095
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7481689453125	2	507.748182	1013.48181	-0.38218	-0.00019405	0.39147	0.00019877	0.0092941	4.7191E-06	507.7483152063723	20.905	0.36218	20.905	20.798	21.16	0					19	7	4	0	0	0	0.0093724	1	6857	6857		126.24	46.792	1	2606200			12090	7353	7823	7856	12279	12279					-0.024391093448230095
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.83447265625	3	338.834547	1013.48181	0.53092	0.00017989	-0.65239	-0.00022105	-0.12147	-4.116E-05	338.8342326848728	20.905	0.21451	20.905	20.847	21.062	0					9	4	3	0	0	0	0.42902	1	6858	6858		39.253	13.679	1	716230			12091	7353	7823	7856	12280	12280					-0.024391093448230095
GAYDGKFEK	9	Unmodified	_GAYDGKFEK_					0	0	0		ENSG00000196363|ENST00000358625|WDR5;WDR5|p.V217Cfs*4|5|0.4|ENSG00000196363|chr9:134154476-134154476|C/-|frameshift_variant	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.74835205078125	2	507.748182	1013.48181	2.9496	0.0014977	-1.5952	-0.00080998	1.3543	0.00068767	507.7472133731955	20.917	0.41116	20.917	20.811	21.222	0					16	8	3	0	0	0	0.052435	1	6738	6738		78.264	30.606	1	1029700			12092	7353	7823	7856	12281	12281					-0.024391093448230095
GAYDGKYEK	9	Unmodified	_GAYDGKYEK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;WDR5B|p.P136Efs*12|1|0.03|ENSG00000196981|chr3:122415124-122415125|-/CTCT|frameshift_variant	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2481079101562	2	515.745639	1029.47673	0.22087	0.00011391	0.45102	0.00023261	0.67189	0.00034652	515.7453653422937	17.164	0.1699	17.164	17.033	17.203	0					6	5	2	0	0	0	0.22837	1	4050	4050		58.23	6.8945	1	135650			12093	7411	7824	7857	12282	12282					-0.036834132074318404
GAYDGKYEK	9	Unmodified	_GAYDGKYEK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;WDR5B|p.P136Efs*12|1|0.03|ENSG00000196981|chr3:122415124-122415125|-/CTCT|frameshift_variant	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7454833984375	2	515.745639	1029.47673	0.032358	1.6688E-05	-0.33465	-0.00017259	-0.30229	-0.00015591	515.7453557899082	17.475	0.32663	17.475	17.331	17.658	0					15	8	3	0	0	0	0.035106	1	4938	4938		104.01	29.759	1	1098700			12094	7411	7824	7857	12283	12283					-0.036834132074318404
GAYDGKYEK	9	Unmodified	_GAYDGKYEK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;WDR5B|p.P136Efs*12|1|0.03|ENSG00000196981|chr3:122415124-122415125|-/CTCT|frameshift_variant	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.745849609375	2	515.745639	1029.47673	0.072761	3.7526E-05	0.012706	6.553E-06	0.085467	4.4079E-05	515.7458417682143	17.203	0.11946	17.203	17.127	17.247	0					5	3	2	0	0	0	0.16806	1	4273	4273		65.465	19.493	1	215080			12095	7411	7824	7857	12284	12284					-0.036834132074318404
GAYDGKYEK	9	Unmodified	_GAYDGKYEK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;WDR5B|p.P136Efs*12|1|0.03|ENSG00000196981|chr3:122415124-122415125|-/CTCT|frameshift_variant	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7460327148438	2	515.745639	1029.47673	-0.50721	-0.00026159	0.71324	0.00036785	0.20603	0.00010626	515.7458391437988	17.455	0.29884	17.455	17.285	17.583	0					11	6	3	0	0	0	0.04067	1	5185	5185		98.582	19.131	1	651540			12096	7411	7824	7857	12285	12285					-0.036834132074318404
GAYLPQAAIG	10	Unmodified	_GAYLPQAAIG_					0	0	0			REV__ENSG00000049860|ENST00000261416|HEXB	REV__ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7608947753906	2	480.761092	959.507631	-0.16275	-7.8243E-05	-0.52426	-0.00025204	-0.68701	-0.00033029	480.76096185623663	24.396	0.3206	24.396	24.294	24.615	0					11	7	2	0	0	0	0.42631	1	8221	8221		53.351	53.351	1	1219800	+		12097	13029	7825	7858	12286	12286					0.02625784897475114
GAYQTIKAQ	9	Unmodified	_GAYQTIKAQ_					0	0	0		tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.17840576171875	3	327.178425	978.513445	0.55684	0.00018219	-0.25423	-8.3178E-05	0.30261	9.9008E-05	327.17828525980394	16.489	0.091965	16.489	16.415	16.506	0					4	2	2	0	0	0	0.46194	1	3912	3912		36.447	0	1	101800			12098	22792	7826	7859	12287	12287					0.023328834091330464
GCAMGPHCAEK	11	Unmodified	_GCAMGPHCAEK_					0	0	0		ITGB1BP2|p.T60A|1|0.62|ENSG00000147166|chrX:71302417-71302417|A/G|missense_variant	ITGB1BP2|p.T60A|1|0.62|ENSG00000147166|chrX:71302417-71302417|A/G|missense_variant	ITGB1BP2|p.T60A|1|0.62|ENSG00000147166|chrX:71302417-71302417|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2628784179688	2	552.225179	1102.43581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.647	1	12.647	12.147	13.147	0								0	0	0	0.43542	1	2897	2897		29.17	0.020503	1				12099	11233	7828	7860	12288	12288					-0.11131537114556522
GCEECRYP	8	Unmodified	_GCEECRYP_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225;REV__ENSG00000147789|ENST00000532777|ZNF7;REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF;REV__nc|ENSG00000196172|Q96N22-2|ZNF681;REV__ENSG00000256771|ENST00000589717|ZNF253	REV__ENSG00000256771|ENST00000589717|ZNF253	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.6850280761719	2	478.68367	955.352787	0.44618	0.00021358	1.4583	0.00069805	1.9044	0.00091162	478.6849172510046	20.634	1.7052	20.634	19.441	21.147	0					105	38	4	0	0	0	0.76283	1	6289	6289		25.45	1.2474	1	821380	+		12100	17760;15364;15729;17229;17761	7829	7861	12289	12289					-0.12667530570911367
GCEPGGAP	8	Unmodified	_GCEPGGAP_					0	0	0		ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.1404113769531	2	344.141964	686.269375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.867	1	43.867	43.367	44.367	0								0	0	0	1.7419	1	16507	16507		16.705	7.2344	1				12101	8415	7830	7862	12290	12290					-0.08630898956459987
GCGGPLVGK	9	Unmodified	_GCGGPLVGK_					0	0	0		ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.209716796875	2	394.210181	786.405809	0.57664	0.00022732	-0.96508	-0.00038045	-0.38844	-0.00015313	394.2097639467485	22.373	0.28945	22.373	22.279	22.569	0					12	8	2	0	0	0	0.25109	1	6335	6335		55.504	0	1	96844			12102	8676	7831	7863	12291	12291					0.004062152740630154
GCGGPLVGK	9	Unmodified	_GCGGPLVGK_					0	0	0		ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	394.2099914550781	2	394.210181	786.405809	-1.2618	-0.00049741	1.1636	0.0004587	-0.098195	-3.871E-05	394.2105896733607	22.472	0.40366	22.472	22.326	22.729	0					19	12	2	0	0	0	0.23186	1	6597	6597		57.811	7.7867	1	210950			12103	8676	7831	7863	12292	12292					0.004062152740630154
GCGGPLVGK	9	Unmodified	_GCGGPLVGK_					0	0	0		ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.2101135253906	2	394.210181	786.405809	-0.1617	-6.3743E-05	-0.3177	-0.00012524	-0.4794	-0.00018898	394.210082559253	22.489	0.37449	22.489	22.376	22.75	0					11	8	2	0	0	0	0.41354	1	6717	6717		40.573	5.3719	1	112200			12104	8676	7831	7863	12293	12293					0.004062152740630154
GCGGPLVGK	9	Unmodified	_GCGGPLVGK_					0	0	0		ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.210205078125	2	394.210181	786.405809	-2.219	-0.00087474	1.6367	0.00064522	-0.58222	-0.00022952	394.2109797877327	22.525	0.19816	22.525	22.407	22.605	0					9	4	3	0	0	0	0.23186	1	6709	6709		57.811	7.7867	1	120910			12105	8676	7831	7863	12294	12294					0.004062152740630154
GCGPLGLG	8	Unmodified	_GCGPLGLG_					0	0	0			REV__ENST00000345146.6_1_2:209116282-209119789:-|nuORF	REV__ENST00000345146.6_1_2:209116282-209119789:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	337.1694030761719	2	337.170524	672.326496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.51	1	45.51	45.01	46.01	0								0	0	0	1.7419	1	15486	15486		16.705	0	1		+		12106	18480	7832	7864	12295	12295					-0.022774316800678207
GCKTMRPSKQ	10	Unmodified	_GCKTMRPSKQ_					0	0	0			REV__GRIK2|p.F694Sfs*16|1|0.22|ENSG00000164418|chr6:101928623-101928623|T/-|frameshift_variant	REV__GRIK2|p.F694Sfs*16|1|0.22|ENSG00000164418|chr6:101928623-101928623|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.7908935546875	2	568.289168	1134.56378	-1.2732	-0.00072354	1.1631	0.00066099	-0.11005	-6.2542E-05	568.7911909054466	17.266	0.15226	17.266	17.183	17.335	0					7	4	2	0	0	0	0.5276	1	4278	4278		23.523	0	1	130880	+		12107	20705	7833	7865	12296	12296					0.001883464709862892
GCPSKSGG	8	Unmodified	_GCPSKSGG_					0	0	0		ENST00000393240.7_1_12:79258084-79371603:+|nuORF	ENST00000393240.7_1_12:79258084-79371603:+|nuORF	ENST00000393240.7_1_12:79258084-79371603:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.65576171875	2	346.655238	691.295924	1.5035	0.0005212	-2.1735	-0.00075346	-0.67001	-0.00023226	346.6550722353306	45.716	0.23195	45.716	45.62	45.852	0					17	9	2	0	0	0	0.76283	1	18304	18304		25.45	2.4135	1	118690			12108	9155	7834	7866	12297	12297					-0.06207210065099389
GCSLAPLAR	9	Unmodified	_GCSLAPLAR_					0	0	0		ENST00000521689.5_1_8:98881135-98900426:+|nuORF	ENST00000521689.5_1_8:98881135-98900426:+|nuORF	ENST00000521689.5_1_8:98881135-98900426:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.24176025390625	2	444.242012	886.469472	0.78328	0.00034797	-2.2493	-0.00099923	-1.466	-0.00065126	444.24134296927275	24.254	0.31712	24.254	24.113	24.43	0					24	6	5	0	0	0	0.35045	1	8339	8339		45.952	3.4775	1	1628900			12109	10318	7835	7867	12298	12298					0.02169575711161542
GCWSFIPHINS	11	Carbamidomethyl (C)	_GC(Carbamidomethyl (C))WSFIPHINS_	GC(1)WSFIPHINS		GC(80)WSFIPHINS		0	1	0			REV__ENST00000460338.5_1_13:103443606-103451020:-|nuORF	REV__ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	659.307373046875	2	659.305872	1316.59719	-0.20349	-0.00013417	0.78161	0.00051532	0.57811	0.00038115	659.3060553628702	25.74	0.51146	25.74	25.653	26.164	0					16	10	2	0	0	0	0.15477	1	8839	8839		79.713	6.8333	1	599920	+		12110	14770	7836	7868	12299	12299	544				-0.04844328485432925
GCYRDLKF	8	Carbamidomethyl (C)	_GC(Carbamidomethyl (C))YRDLKF_	GC(1)YRDLKF		GC(110)YRDLKF		0	1	0		nc|ENSG00000145536|Q8TE57-2|ADAMTS16;ENSG00000145536|ENST00000274181|ADAMTS16	nc|ENSG00000145536|Q8TE57-2|ADAMTS16	nc|ENSG00000145536|Q8TE57-2|ADAMTS16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7607421875	2	529.758027	1057.5015	3.4458	0.0018254	2.0725	0.0010979	5.5182	0.0029233	529.7589363364592	31.641	0.31564	31.641	31.586	31.902	0					16	6	3	0	0	0	0.24714	1	11861	11861		106.42	21.056	1	1918700			12111	4675	7837	7869	12300	12300	197				-0.02495056605721402
GDAARYHLV	9	Unmodified	_GDAARYHLV_					0	0	0		ENSG00000183161|ENST00000327470|FANCF	ENSG00000183161|ENST00000327470|FANCF	ENSG00000183161|ENST00000327470|FANCF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2611083984375	2	501.261791	1000.50903	-0.59116	-0.00029633	-0.23114	-0.00011586	-0.8223	-0.00041219	501.26139994426035	25.282	0.47167	25.282	25.11	25.582	0					18	9	3	0	0	0	0.39215	1	8837	8837		42.396	0	1	990270			12112	6944	7838	7870	12301	12301					0.008794189862328494
GDADEQLDE	9	Unmodified	_GDADEQLDE_					0	0	0			REV__PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant	REV__PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.1965026855469	2	496.196176	990.377799	0.96212	0.0004774	-0.55979	-0.00027777	0.40233	0.00019963	496.1960648121098	26.893	0.26465	26.893	26.788	27.053	0					12	5	3	0	0	0	0.1115	1	9574	9574		76.774	10.345	1	471390	+		12113	15578	7839	7871	12302	12302					-0.1177748096298501
GDADLVPKL	9	Unmodified	_GDADLVPKL_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2605895996094	2	464.260925	926.507297	-0.72975	-0.0003388	0.69561	0.00032294	-0.034148	-1.5854E-05	464.26134415880506	28.624	0.31176	28.624	28.463	28.775	0					20	12	2	0	0	0	0.37197	1	9215	9215		44.117	1.7207	1	65419			12114	535	7840	7872	12303	12303					0.04110365177609765
GDAGIIVDFE	10	Unmodified	_GDAGIIVDFE_					0	0	0			REV__nc|ENSG00000133816|O94851-2|MICAL2	REV__nc|ENSG00000133816|O94851-2|MICAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2530517578125	2	518.253297	1034.49204	0.052151	2.7028E-05	-1.0521	-0.00054528	-0.99999	-0.00051825	518.2527490033928	14.652	0.93887	14.652	13.924	14.863	0					44	23	3	0	0	0	0.47859	1	3549	3549		47.657	3.5405	1	2286000	+		12115	20050	7841	7873	12304	12304					-0.023825464102628757
GDAGLGKLIK	10	Unmodified	_GDAGLGKLIK_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.I227Nfs*42|1|0.46|ENSG00000163565|chr1:159018351-159018352|-/A|frameshift_variant	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2978820800781	2	486.297842	970.581131	-1.2409	-0.00060345	1.5457	0.00075167	0.30478	0.00014821	486.29855404233217	28.35	0.45825	28.35	28.262	28.72	0					38	17	5	0	0	0	0.0045666	1	9134	9134		167.23	34.471	1	9026000			12116	5578	7842	7874	12305	12305					0.09466333339946686
GDAGLGKLIK	10	Unmodified	_GDAGLGKLIK_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.I227Nfs*42|1|0.46|ENSG00000163565|chr1:159018351-159018352|-/A|frameshift_variant	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2972717285156	2	486.297842	970.581131	0.643	0.00031269	-0.95507	-0.00046445	-0.31207	-0.00015176	486.2972308055599	28.62	0.77986	28.62	28.515	29.295	0					35	16	5	0	0	0	0.0093795	1	10516	10516		145.16	12.398	1	37989000			12117	5578	7842	7874	12306	12306					0.09466333339946686
GDARDPRIP	9	Unmodified	_GDARDPRIP_					0	0	0		ENST00000531778.1_1_11:134251834-134254167:-|nuORF;ENSG00000109956|ENST00000312527|B3GAT1;nc|ENSG00000109956|Q9P2W7-2|B3GAT1	ENST00000531778.1_1_11:134251834-134254167:-|nuORF	ENST00000531778.1_1_11:134251834-134254167:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.7642822265625	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.991	1	21.991	21.491	22.491	0								0	0	0	0.3304	1	6148	6148		29.15	0	1				12118	2600	7843	7875	12307	12307					0.01690517497888777
GDASLLARL	9	Unmodified	_GDASLLARL_					0	0	0		ENSG00000177706|ENST00000313766|FAM20C	ENSG00000177706|ENST00000313766|FAM20C	ENSG00000177706|ENST00000313766|FAM20C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2664794921875	2	458.266542	914.51853	2.5047	0.0011478	-2.9276	-0.0013416	-0.42284	-0.00019377	458.2652048025152	42.02	0.18866	42.02	41.906	42.095	0					8	5	2	0	0	0	0.25716	1	16712	16712		54.776	8.8041	1	113350			12119	6684	7844	7876	12308	12308					0.05785187271760606
GDDCDYDS	8	Unmodified	_GDDCDYDS_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.13031005859375	2	445.129447	888.244342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.378	1	55.378	54.878	55.878	0								0	0	0	1.7419	1	20976	20976		8.2313	0	1		+		12120	21128	7845	7877	12309	12309					-0.20425043340355842
GDDSVVIGGK	10	Unmodified	_GDDSVVIGGK_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7453308105469	2	473.745639	945.476725	-0.2895	-0.00013715	-0.2552	-0.0001209	-0.5447	-0.00025805	473.74547418902705	17.765	0.23056	17.765	17.649	17.88	0					15	6	3	0	0	0	0.26198	1	4288	4288		71.877	1.0613	1	652290			12121	5148	7846	7878	12310	12310					0.0018058679258956545
GDERKLTL	8	Unmodified	_GDERKLTL_					0	0	0			REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF	REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.263916015625	2	466.263999	930.513445	0.6533	0.00030461	-1.0161	-0.00047375	-0.36276	-0.00016914	466.2634732541116	30.776	0.56144	30.776	30.663	31.224	0					34	11	4	0	0	0	0.2451	1	11443	11443		110.12	3.4368	1	1493300	+		12122	18197	7847	7879	12311	12311					0.04540883409140406
GDEYLGKGK	9	Unmodified	_GDEYLGKGK_					0	0	0		tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7497863769531	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.685	1	12.685	12.185	13.185	0								0	0	0	0.2591	1	2529	2529		42.396	1.8235	1				12123	22836	7848	7880	12312	12312					-0.0023110934479291245
GDFKAYAL	8	Unmodified	_GDFKAYAL_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.72857666015625	2	442.729261	883.443968	0.50507	0.00022361	-1.2018	-0.00053207	-0.69673	-0.00030846	442.7286386771784	37.623	0.19208	37.623	37.56	37.752	0					9	6	2	0	0	0	0.44433	1	14734	14734		65.803	2.8247	1	83162			12124	2223	7849	7881	12313	12313					-0.002415755396327768
GDFKEISSV	9	Unmodified	_GDFKEISSV_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2477722167969	2	491.248015	980.481476	-0.52742	-0.00025909	1.3973	0.00068644	0.86992	0.00042735	491.24820640674795	33.672	0.17046	33.672	33.568	33.739	0					10	4	3	0	0	0	0.070005	1	12471	12471		88.177	13.922	1	354360			12125	4850	7850	7882	12314	12314					-0.009545290646542526
GDFKEISSV	9	Unmodified	_GDFKEISSV_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.24761962890625	2	491.248015	980.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.532	1	33.532	33.032	34.032	0								0	0	0	0.099216	1	11258	11258		71.877	9.7701	1				12126	4850	7850	7882	12315	12315					-0.009545290646542526
GDFKEISSV	9	Unmodified	_GDFKEISSV_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.24774169921875	2	491.248015	980.481476	0.58509	0.00028743	0.42519	0.00020888	1.0103	0.0004963	491.24778616202735	33.687	0.40337	33.687	33.561	33.964	0					14	10	3	0	0	0	0.095583	1	12920	12920		80.455	14.025	1	621450			12127	4850	7850	7882	12316	12316					-0.009545290646542526
GDFVLKSGL	9	Unmodified	_GDFVLKSGL_					0	0	0		ENSG00000114491|ENST00000232607|UMPS	ENSG00000114491|ENST00000232607|UMPS	ENSG00000114491|ENST00000232607|UMPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2640075683594	2	468.263468	934.512382	-1.0598	-0.00049626	0.48625	0.00022769	-0.57353	-0.00026856	468.2637911809591	39.985	0.18821	39.985	39.923	40.111	0					11	6	3	0	0	0	0.38666	1	15738	15738		42.864	2.0861	1	102690			12128	2853	7851	7883	12317	12317					0.042506690402547065
GDGPIKSK	8	Unmodified	_GDGPIKSK_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK;TEK|p.S586Vfs*12|1|0.27|ENSG00000120156|chr9:27197441-27197441|A/-|frameshift_variant;TEK|p.E624Nfs*33|1|0.41|ENSG00000120156|chr9:27197556-27197556|G/-|frameshift_variant;TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant;TEK|p.N884Kfs*6|1|0.16|ENSG00000120156|chr9:27209197-27209197|C/-|frameshift_variant	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.2271423339844	2	401.226885	800.439217	0.6023	0.00024166	0.078786	3.1611E-05	0.68108	0.00027327	401.22676702585846	17.355	0.18902	17.355	17.238	17.427	0					9	6	2	0	0	0	0.48092	1	4110	4110		62.107	6.6032	1	64141			12129	3162	7852	7884	12318	12318					0.03101540317618401
GDGPIKSK	8	Unmodified	_GDGPIKSK_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK;TEK|p.S586Vfs*12|1|0.27|ENSG00000120156|chr9:27197441-27197441|A/-|frameshift_variant;TEK|p.E624Nfs*33|1|0.41|ENSG00000120156|chr9:27197556-27197556|G/-|frameshift_variant;TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant;TEK|p.N884Kfs*6|1|0.16|ENSG00000120156|chr9:27209197-27209197|C/-|frameshift_variant	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.22735595703125	2	401.226885	800.439217	-1.3327	-0.00053473	1.8811	0.00075476	0.5484	0.00022003	401.22766350950644	17.365	0.22825	17.365	17.247	17.475	0					14	8	3	0	0	0	0.69548	1	4332	4332		34.173	0	1	119870			12130	3162	7852	7884	12319	12319					0.03101540317618401
GDGPIKSK	8	Unmodified	_GDGPIKSK_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK;TEK|p.S586Vfs*12|1|0.27|ENSG00000120156|chr9:27197441-27197441|A/-|frameshift_variant;TEK|p.E624Nfs*33|1|0.41|ENSG00000120156|chr9:27197556-27197556|G/-|frameshift_variant;TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant;TEK|p.N884Kfs*6|1|0.16|ENSG00000120156|chr9:27209197-27209197|C/-|frameshift_variant	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.22705078125	2	401.226885	800.439217	-0.12881	-5.1683E-05	0.78724	0.00031586	0.65842	0.00026418	401.22712418739764	17.408	0.17662	17.408	17.303	17.48	0					8	5	2	0	0	0	0.71588	1	4329	4329		31.53	2.3803	1	120300			12131	3162	7852	7884	12320	12320					0.03101540317618401
GDGRGARQY	9	Unmodified	_GDGRGARQY_					0	0	0			REV__ENST00000409410.6_3_19:38826782-38827079:+|nuORF	REV__ENST00000409410.6_3_19:38826782-38827079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2397155761719	2	490.238847	978.463141	0.81095	0.00039756	1.3412	0.00065751	2.1522	0.0010551	490.23951501875604	34.923	0.20868	34.923	34.878	35.087	0					11	5	3	0	0	0	0.35045	1	13078	13078		45.952	0	1	230600	+		12132	18998	7853	7885	12321	12321					-0.026952261960104806
GDGVIVIKL	9	Unmodified	_GDGVIVIKL_					0	0	0			REV__nc|ENSG00000139725|Q9HBH0-2|RHOF	REV__nc|ENSG00000139725|Q9HBH0-2|RHOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2897644042969	2	457.289485	912.564418	-0.15025	-6.8707E-05	-0.127	-5.8074E-05	-0.27724	-0.00012678	457.2893585816339	37.035	0.6	37.035	36.684	37.284	0					41	18	3	0	0	0	0.48389	1	14331	14331		34.173	0	1	247260	+		12133	15045	7854	7886	12322	12322					0.10463832453979194
GDGVPAAPGLP	11	Unmodified	_GDGVPAAPGLP_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.75042724609375	2	475.750724	949.486896	-0.40887	-0.00019452	-1.4602	-0.00069469	-1.8691	-0.00088921	475.7505012734894	30.008	0.28365	30.008	29.922	30.206	0					14	7	3	0	0	0	0.63135	1	10783	10783		34.173	1.3601	1	161540			12134	2869	7855	7887	12323	12323					0.010131945178045498
GDHRIGIF	8	Unmodified	_GDHRIGIF_					0	0	0		nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000586714.1_1_17:40854552-40854989:-|nuORF;ENST00000492143.5_1_7:148504740-148513906:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000106462|Q15910-4|EZH2;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1	nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910-3|EZH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7457275390625	2	457.745776	913.477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.027	1	38.027	37.527	38.527	0								0	0	0	1.7419	1	14917	14917		42.474	7.2737	1				12135	2441	7856	7888	12324	12324					0.01680051303083019
GDHVTAGF	8	Unmodified	_GDHVTAGF_					0	0	0			REV__ENSG00000157119|ENST00000287777|KLHL40	REV__ENSG00000157119|ENST00000287777|KLHL40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	402.1880187988281	2	402.18776	802.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.065	1	23.065	22.565	23.565	0								0	0	0	1.7419	1	6879	6879		26.796	5.0938	1		+		12136	15650	7857	7889	12325	12325					-0.048118922676053444
GDHYDALRD	9	Unmodified	_GDHYDALRD_					0	0	0		ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	ENST00000491239.2_1_1:27614218-27630434:+|nuORF	ENST00000491239.2_1_1:27614218-27630434:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2380981445312	2	531.23597	1060.45739	3.4247	0.0018193	0.15457	8.2114E-05	3.5792	0.0019014	531.2360960671934	20.369	0.26857	20.369	20.26	20.528	0					10	5	3	0	0	0	0.35021	1	6473	6473		45.972	3.5761	1	865840			12137	4511	7858	7890	12326	12326					-0.07042369498321932
GDIDGFQKI	9	Unmodified	_GDIDGFQKI_					0	0	0		ENST00000401540.2_1_2:130750765-130751497:+|nuORF	ENST00000401540.2_1_2:130750765-130751497:+|nuORF	ENST00000401540.2_1_2:130750765-130751497:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7560119628906	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.861	1	44.861	44.361	45.361	0								0	0	0	0.28666	1	17970	17970		37.812	4.2959	1				12138	9252	7859	7891	12327	12327					0.001371771722460835
GDILWEHLE	9	Unmodified	_GDILWEHLE_					0	0	0		ENSG00000157557|ENST00000360938|ETS2;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ETS1|p.N203Rfs*56|1|0.07|ENSG00000134954|chr11:128484945-128484946|-/ATTTCTTC|frameshift_variant;ENSG00000134954|ENST00000392668|ETS1	ENSG00000157557|ENST00000360938|ETS2;nc|ENSG00000134954|P14921-5|ETS1	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2742919921875	2	556.274564	1110.53457	1.6918	0.00094113	-0.78466	-0.00043649	0.90718	0.00050464	556.27407328108	44.946	0.52914	44.946	44.845	45.375	0					78	30	5	0	0	0	0.61124	1	17528	17528		11.511	0	1	1254400			12139	5221;11533	7860	7892	12328	12328					-0.016271512820139833
GDIPKRQH	8	Unmodified	_GDIPKRQH_					0	0	0		nc|ENSG00000163406|Q16348-2|SLC15A2;SLC15A2|p.N718Tfs*2|1|0.11|ENSG00000163406|chr3:121940965-121940965|G/-|frameshift_variant;ENSG00000163406|ENST00000489711|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	317.5112609863281	3	317.510397	949.509363	0.28856	9.162E-05	2.5917	0.00082289	2.8803	0.00091451	317.51130392166976	18.565	0.11531	18.565	18.539	18.654	0					7	4	2	0	0	0	0.79882	1	4644	4644		15.642	0	1	468020			12140	5553	7861	7893	12329	12329					0.032588387060854984
GDISAVQPK	9	Unmodified	_GDISAVQPK_					0	0	0		nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.75018310546875	2	457.750724	913.486896	-0.4365	-0.00019981	0.19297	8.8332E-05	-0.24353	-0.00011148	457.75065916667245	33.608	0.32455	33.608	33.5	33.825	0					11	7	2	0	0	0	0.22377	1	12782	12782		58.782	12.81	1	840270			12141	2581	7862	7894	12330	12330					0.026691945178072274
GDISELSLPAL	11	Unmodified	_GDISELSLPAL_					0	0	0			REV__ENST00000405486.5_2_22:41680949-41681714:-|nuORF	REV__ENST00000405486.5_2_22:41680949-41681714:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.205810546875	3	372.204528	1113.59175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.711	1	14.711	14.211	15.211	0								0	0	0	0.44116	1	3077	3077		30.569	5.4429	1		+		12142	18970	7863	7895	12331	12331					0.039502712037119636
GDIVTRPIIVI	11	Unmodified	_GDIVTRPIIVI_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.25067138671875	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.511	1	47.511	47.011	48.011	0								0	0	0	0.44926	1	17421	17421		26.063	2.5407	1		+		12143	17452	7864	7896	12332	12332					0.14403109016689086
GDKDERLI	8	Unmodified	_GDKDERLI_					0	0	0		LDB1|p.E353K|1|0.31|ENSG00000198728|chr10:102108272-102108272|C/T|missense_variant	LDB1|p.E353K|1|0.31|ENSG00000198728|chr10:102108272-102108272|C/T|missense_variant	LDB1|p.E353K|1|0.31|ENSG00000198728|chr10:102108272-102108272|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2537841796875	2	473.253631	944.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.936	1	14.936	14.436	15.436	0								0	0	0	1.7419	1	3156	3156		31.955	5.1588	1				12144	11311	7865	7897	12333	12333					0.018242930294718462
GDKDSKLLLE	10	Unmodified	_GDKDSKLLLE_					0	0	0		KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2097473144531	3	373.208161	1116.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.5	1	43.5	43	44	0								0	0	0	0.38797	1	17406	17406		46.457	15.888	1				12145	1690	7866	7898	12334	12334					0.04901673578001464
GDKETFIASE	10	Unmodified	_GDKETFIASE_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.76025390625	2	548.761486	1095.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.484	1	20.484	19.984	20.984	0								0	0	0	0.41253	1	5490	5490		26.693	2.1737	1				12146	3794	7867	7899	12335	12335					-0.035514652441406724
GDKETFIASE	10	Unmodified	_GDKETFIASE_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7599487304688	2	548.761486	1095.50842	0.50114	0.00027501	-3.5105	-0.0019264	-3.0094	-0.0016514	548.7598175187445	20.79	0.19995	20.79	20.731	20.931	0					9	4	3	0	0	0	0.44601	1	6522	6522		51.193	4.7359	1	509650			12147	3794	7867	7899	12336	12336					-0.035514652441406724
GDKFKIVKS	9	Unmodified	_GDKFKIVKS_					0	0	0			REV__ENSG00000152034|ENST00000281806|MCHR2	REV__ENSG00000152034|ENST00000281806|MCHR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	341.2063293457031	3	341.206203	1020.59678	0.21698	7.4035E-05	0.10868	3.7082E-05	0.32566	0.00011112	341.2062288544843	22.716	0.13083	22.716	22.65	22.781	0					7	4	2	0	0	0	0.61124	1	6459	6459		17.468	0	1	175760	+		12148	15496	7868	7900	12337	12337					0.08730619856999056
GDKGLQGWP	9	Unmodified	_GDKGLQGWP_					0	0	0			REV__ENSG00000162073|ENST00000318782|PAQR4	REV__ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.24432373046875	2	479.243067	956.47158	0.46337	0.00022207	2.3462	0.0011244	2.8095	0.0013465	479.2442613511411	19.529	0.2276	19.529	19.356	19.584	0					11	5	3	0	0	0	0.47038	1	5920	5920		35.618	2.1027	1	490850	+		12149	15799	7869	7901	12338	12338					-0.008396722793804656
GDKGRLCLQK	10	Unmodified	_GDKGRLCLQK_					0	0	0		AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense	AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense	AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.2098693847656	3	373.209731	1116.60736	0.35172	0.00013127	-0.31702	-0.00011832	0.034702	1.2951E-05	373.2098288272059	22.377	2.8704	22.377	22.148	25.019	0					134	67	4	0	0	0	0.4287	2	7246	7246;7582		53.089	10.225	1	14117000			12150	127	7870	7902	12339;12340	12339					0.053722792397593366
GDKGRLCLQK	10	Unmodified	_GDKGRLCLQK_					0	0	0		AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense	AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense	AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.20977783203125	3	373.209731	1116.60736	0.8433	0.00031473	-0.95435	-0.00035617	-0.11105	-4.1447E-05	373.2095766262965	22.261	1.6563	22.261	21.955	23.612	0					116	33	4	0	0	0	0.4287	2	7493	7493;7854		53.089	3.7405	1	38299000			12151	127	7870	7902	12341;12342	12341					0.053722792397593366
GDKQWSIQP	9	Unmodified	_GDKQWSIQP_					0	0	0			REV__ENSG00000198799|ENST00000361127|LRIG2	REV__ENSG00000198799|ENST00000361127|LRIG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7653198242188	2	529.766906	1057.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.356	1	16.356	15.856	16.856	0								0	0	0	0.17415	1	4512	4512		54.722	3.5297	1		+		12152	17433	7871	7903	12343	12343					-0.00720018079186957
GDKSPPRMYK	10	Unmodified	_GDKSPPRMYK_					0	0	0			REV__nc|ENSG00000111224|Q9NR21-2|PARP11	REV__nc|ENSG00000111224|Q9NR21-2|PARP11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.8032836914062	2	589.802965	1177.59138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.863	1	26.863	26.363	27.363	0								0	0	0	0.35404	1	8214	8214		23.523	0	1		+		12153	13958	7872	7904	12344	12344					0.009685730028650141
GDKVVEQMKK	10	Unmodified	_GDKVVEQMKK_					0	0	0			REV__PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant	REV__PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.8815002441406	3	387.881391	1160.62234	-0.6711	-0.00026031	0.9821	0.00038094	0.311	0.00012063	387.8817216863792	31.034	0.80182	31.034	30.831	31.633	0					35	16	4	0	0	0	0.5276	1	11550	11550		42.338	8.4164	1	2186000	+		12154	17252	7873	7905	12345	12345					0.04845726317103072
GDLANSQLL	9	Unmodified	_GDLANSQLL_					0	0	0		ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000460343.5_1_3:53260493-53260973:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.74853515625	2	465.748182	929.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.602	1	37.602	37.102	38.102	0								0	0	0	0.2591	1	14267	14267		42.396	5.237	1				12155	9720	7874	7906	12346	12346					0.014248906552097651
GDLAQQVRSD	10	Unmodified	_GDLAQQVRSD_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.1833801269531	3	363.515877	1087.5258	3.1332	0.001139	0.38818	0.00014111	3.5214	0.0012801	363.5160195048126	24.793	0.70285	24.793	24.595	25.298	0					40	14	5	0	0	0	0.61187	1	8566	8566		30.569	0	1	12263000	+		12156	13951	7875	7907	12347	12347					-0.01446124918447822
GDLDVLKQK	9	Unmodified	_GDLDVLKQK_					0	0	0		nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1	nc|ENSG00000182771|Q9ULK0-2|GRID1	nc|ENSG00000182771|Q9ULK0-2|GRID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.29278564453125	2	508.292756	1014.57096	-0.026376	-1.3407E-05	-0.33553	-0.00017055	-0.36191	-0.00018395	508.2926292096283	16.616	0.2238	16.616	16.438	16.662	0					8	5	2	0	0	0	0.28897	1	4548	4548		51.193	0	1	250180			12157	6919	7876	7908	12348	12348					0.06425725614712974
GDLICLIL	8	Carbamidomethyl (C)	_GDLIC(Carbamidomethyl (C))LIL_	GDLIC(1)LIL		GDLIC(57)LIL		0	1	0		ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.76434326171875	2	458.762246	915.50994	4.2952	0.0019705	-0.11256	-5.1638E-05	4.1826	0.0019188	458.76224121334633	26.506	0.15094	26.506	26.443	26.594	0					12	5	3	0	0	0	0.527	1	8337	8337		57.453	57.453	1	174150			12158	1985	7877	7909	12349	12349	79				0.048804973109326966
GDLKDWINH	9	Unmodified	_GDLKDWINH_					0	0	0			REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2733154296875	2	549.272355	1096.53016	0.36305	0.00019942	0.55986	0.00030751	0.92291	0.00050693	549.2726216983765	36.243	0.35213	36.243	36.102	36.454	0					42	17	3	0	0	0	0.22837	1	12254	12254		58.23	3.5076	1	857940	+		12159	16589	7878	7910	12350	12350					-0.01424615704900134
GDLQLFRK	8	Unmodified	_GDLQLFRK_					0	0	0			REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	326.19073486328125	3	326.190665	975.550165	1.5164	0.00049464	-1.4193	-0.00046297	0.097072	3.1664E-05	326.19019688719777	29.607	0.21101	29.607	29.506	29.717	0					7	4	2	0	0	0	0.69548	1	10996	10996		34.173	0	1	287590	+		12160	12024	7879	7911	12351	12351					0.06141180025701942
GDNKIKAEI	9	Unmodified	_GDNKIKAEI_					0	0	0		nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7822265625	2	494.277106	986.53966	-1.2589	-0.00062225	1.8294	0.00090425	0.57052	0.000282	494.27826225815335	31.341	0.3041	31.341	31.225	31.529	0					31	12	4	0	0	0	0.41113	1	10407	10407		40.778	6.6056	1	178880			12161	6190	7880	7912	12352	12352					0.04585152580614249
GDPAARRRLSP	11	Unmodified	_GDPAARRRLSP_					0	0	0		ENST00000402693.4_1_19:1555279-1555546:-|nuORF	ENST00000402693.4_1_19:1555279-1555546:-|nuORF	ENST00000402693.4_1_19:1555279-1555546:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	598.338134765625	2	598.336353	1194.65815	0.13736	8.2188E-05	2.6784	0.0016026	2.8158	0.0016848	598.3376884435829	17.257	0.1639	17.257	17.134	17.297	0					8	5	2	0	0	0	0.77537	1	4078	4078		16.717	7.0117	1	56401			12162	9257	7881	7913	12353	12353					0.0686094460897948
GDPAPGVQGY	10	Unmodified	_GDPAPGVQGY_					0	0	0		ENSG00000167791|ENST00000294288|CABP2	ENSG00000167791|ENST00000294288|CABP2	ENSG00000167791|ENST00000294288|CABP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.72442626953125	2	480.724707	959.43486	0.035841	1.723E-05	-0.51023	-0.00024528	-0.47438	-0.00022805	480.72441396060583	28.825	0.3252	28.825	28.686	29.011	0					22	11	3	0	0	0	0.61187	1	9071	9071		32.812	2.3088	1	163310			12163	6029	7882	7914	12354	12354					-0.046479688959493615
GDPGGSAFLKV	11	Unmodified	_GDPGGSAFLKV_					0	0	0		PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant;ENSG00000061455|ENST00000407847|PRDM6	PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant	PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2779541015625	2	524.277106	1046.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.749	1	35.749	35.249	36.249	0								0	0	0	0.28101	1	13876	13876		54.776	8.8041	1				12164	1324	7883	7915	12355	12355					0.01825152580613576
GDPGPKVQ	8	Unmodified	_GDPGPKVQ_					0	0	0			REV__nc|ENSG00000138835|P49796|RGS3	REV__nc|ENSG00000138835|P49796|RGS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.2111511230469	2	399.211235	796.407917	0.41551	0.00016588	-0.68962	-0.0002753	-0.27411	-0.00010943	399.2108988885638	20.034	0.6694	20.034	19.774	20.443	0					39	13	5	0	0	0	0.39542	1	6283	6283		71.378	8.3995	1	3955700	+		12165	21041	7884	7916	12356	12356					0.0015696728352168066
GDPLIAIRKNE	11	Unmodified	_GDPLIAIRKNE_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.2351989746094	3	409.234822	1224.68264	0.63387	0.0002594	-0.91626	-0.00037496	-0.28239	-0.00011556	409.2344738385981	30.186	0.41512	30.186	30.06	30.475	0					14	10	2	0	0	0	0.69004	1	10832	10832		28.577	6.0151	1	1162600	+		12166	15437	7885	7917	12357	12357					0.07928159971856985
GDPTYAFNIR	10	Unmodified	_GDPTYAFNIR_					0	0	0		nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.1924133300781	3	385.192734	1152.55637	0.84748	0.00032644	-1.8418	-0.00070945	-0.99434	-0.00038301	385.1919664650634	20.347	0.20346	20.347	20.29	20.493	0					6	4	2	0	0	0	0.61238	1	6307	6307		32.751	2.4328	1	2890900			12167	6403	7886	7918	12358	12358					-0.013803465334376597
GDPTYAFNIR	10	Unmodified	_GDPTYAFNIR_					0	0	0		nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	385.1924743652344	3	385.192734	1152.55637	-0.14408	-5.5498E-05	-0.58767	-0.00022637	-0.73174	-0.00028186	385.19247632993716	20.092	0.1313	20.092	20.01	20.141	0					5	3	2	0	0	0	0.536	1	5593	5593		41.427	9.8968	1	370730			12168	6403	7886	7918	12359	12359					-0.013803465334376597
GDPVPKSPFV	10	Unmodified	_GDPVPKSPFV_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.1890563964844	3	348.190442	1041.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.823	1	12.823	12.323	13.323	0								0	0	0	0.4201	1	2781	2781		16.007	0.36496	1				12169	3551	7887	7919	12360	12360					0.030383405859993218
GDQDLVGQRW	10	Unmodified	_GDQDLVGQRW_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.2880249023438	2	587.285994	1172.55744	3.1958	0.0018769	0.1587	9.3203E-05	3.3545	0.0019701	587.2862255145538	30.806	0.4604	30.806	30.697	31.157	0					14	9	2	0	0	0	0.41335	1	11460	11460		54.776	1.6874	1	759620			12170	8931	7888	7920	12361	12361					-0.02194132164504481
GDQGWQVKPLG	11	Unmodified	_GDQGWQVKPLG_					0	0	0		ENST00000456916.5_1_16:57662548-57684184:+|nuORF;ENST00000567154.5_1_16:57662548-57684203:+|nuORF	ENST00000456916.5_1_16:57662548-57684184:+|nuORF	ENST00000456916.5_1_16:57662548-57684184:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.53912353515625	3	395.540134	1183.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.34	1	14.34	13.84	14.84	0								0	0	0	0.39826	1	3544	3544		37.508	7.1905	1				12171	9689	7889	7921	12362	12362					0.01411628874939197
GDQHLDKV	8	Unmodified	_GDQHLDKV_					0	0	0			REV__ENST00000470960.1_1_12:107262187-107268295:+|nuORF	REV__ENST00000470960.1_1_12:107262187-107268295:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.2325134277344	2	456.232699	910.450845	-1.079	-0.00049228	-0.59942	-0.00027348	-1.6784	-0.00076575	456.23244171349114	18.977	0.26415	18.977	18.898	19.162	0					13	8	2	0	0	0	0.68432	1	5062	5062		35.618	2.8059	1	67051	+		12172	19477	7890	7922	12363	12363					-0.007962626590369837
GDQLEIQL	8	Unmodified	_GDQLEIQL_					0	0	0		chr17:30631979-30633098|469|11.26|0.0|20.1|+|2|None,LRRC37BP1|1;ENST00000579766.1_1_17:30376071-30377294:+|nuORF;ENST00000417404.2_1_17:28960066-28961284:+|nuORF;ENST00000579094.1_1_17:30374694-30380344:+|nuORF;LRRC37B|p.T873Qfs*22|1|0.32|ENSG00000185158|chr17:32049330-32049330|A/-|frameshift_variant;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B	chr17:30631979-30633098|469|11.26|0.0|20.1|+|2|None,LRRC37BP1|1	chr17:30631979-30633098|469|11.26|0.0|20.1|+|2|None,LRRC37BP1|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.24310302734375	2	458.242732	914.470912	0.05799	2.6574E-05	-0.971	-0.00044495	-0.91301	-0.00041838	458.2422549789728	33.397	0.12972	33.397	33.313	33.442	0					6	4	2	0	0	0	0.64144	1	10857	10857		42.396	0	1	46048			12173	523	7891	7923	12364	12364					0.010254882809135779
GDQNVQLKLKT	11	Unmodified	_GDQNVQLKLKT_					0	0	0			REV__PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant	REV__PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.2381286621094	3	415.238343	1242.6932	0.088859	3.6898E-05	-0.50036	-0.00020777	-0.4115	-0.00017087	415.2381814989378	30.361	0.45047	30.361	30.229	30.68	0					29	11	5	0	0	0	0.39337	1	10314	10314		52.167	2.1337	1	7473100	+		12174	15433	7892	7924	12365	12365					0.08156142626262408
GDQRFRIAR	9	Unmodified	_GDQRFRIAR_					0	0	0			REV__ENST00000415967.2_1_7:56059545-56066762:+|nuORF	REV__ENST00000415967.2_1_7:56059545-56066762:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.5447998046875	3	373.544101	1117.61047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.679	1	53.679	53.179	54.179	0								0	0	0	0.36266	1	20630	20630		22.58	1.7425	1		+		12175	15319	7893	7925	12366	12366					0.05637290408799345
GDQSRSVDLG	10	Unmodified	_GDQSRSVDLG_					0	0	0		SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000485737.1_1_3:47721925-47742822:-|nuORF	SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant	SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7432250976562	2	517.249077	1032.4836	-0.45388	-0.00023477	0.095694	4.9498E-05	-0.35818	-0.00018527	517.7515016365016	11.197	0.13065	11.197	11.116	11.247	0					10	4	3	0	0	0	0.67464	1	2258	2258		14.137	0	1	186610			12176	6428	7894	7926	12367	12367					-0.03134100326838052
GDREDILQ	8	Unmodified	_GDREDILQ_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.23699951171875	2	473.235439	944.456324	2.4051	0.0011382	0.8604	0.00040717	3.2655	0.0015454	473.2358905483603	29.87	0.36679	29.87	29.764	30.131	0					14	7	3	0	0	0	0.67394	1	11003	11003		37.159	1.5408	1	888100	+		12177	15181	7895	7927	12368	12368					-0.01812583867229023
GDRGKRGRGRL	11	Unmodified	_GDRGKRGRGRL_					0	0	0		SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|60|2|anti-sense	SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|60|2|anti-sense	SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|60|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.9102783203125	3	409.909554	1226.70683	1.1237	0.00046061	0.58127	0.00023827	1.705	0.00069888	409.9098616497765	20.821	0.46619	20.821	20.612	21.078	0					30	9	6	0	0	0	0.74458	1	6818	6818		23.378	23.378	1	6834600			12178	22503	7896	7928	12369	12369					0.10254857968743636
GDRLQGRAQ	9	Unmodified	_GDRLQGRAQ_					0	0	0		ENST00000412055.5_2_3:9991823-9994068:-|nuORF	ENST00000412055.5_2_3:9991823-9994068:-|nuORF	ENST00000412055.5_2_3:9991823-9994068:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.1795654296875	3	334.18094	999.52099	-0.038323	-1.2807E-05	-4.2434	-0.0014181	-4.2817	-0.0014309	334.17959910167144	14.422	0.08748	14.422	14.37	14.457	0					6	3	2	0	0	0	0.50858	1	3061	3061		31.53	9.5699	1	45109			12179	9315	7897	7929	12370	12370					0.021210357294194182
GDRNKRKK	8	Unmodified	_GDRNKRKK_					0	0	0		ENSG00000203963|ENST00000684719|C1orf141	ENSG00000203963|ENST00000684719|C1orf141	ENSG00000203963|ENST00000684719|C1orf141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.5377197265625	3	334.536946	1000.58901	0.37197	0.00012444	2.2604	0.0007562	2.6324	0.00088063	334.53761808191314	19.904	0.1193	19.904	19.829	19.948	0					6	3	2	0	0	0	0.75243	1	5247	5247		37.159	12.64	1	166120			12180	7663	7898	7930	12371	12371					0.08873905380085034
GDRPLRLCAG	10	Unmodified	_GDRPLRLCAG_					0	0	0		ENST00000488906.1_1_17:45236559-45237015:-|nuORF;ENST00000439199.1_1_7:23530116-23530830:+|nuORF	ENST00000488906.1_1_17:45236559-45237015:-|nuORF	ENST00000488906.1_1_17:45236559-45237015:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.283203125	2	529.2822	1056.54985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.756	1	35.756	35.256	36.256	0								0	0	0	0.39665	1	11722	11722		31.53	1.2121	1				12181	9557	7899	7931	12372	12372					0.023834370341774047
GDSERHGR	8	Unmodified	_GDSERHGR_					0	0	0			REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2161865234375	2	457.215372	912.416191	0.04383	2.004E-05	2.2722	0.0010389	2.316	0.0010589	457.21645896893153	19.768	0.20093	19.768	19.636	19.837	0					12	6	2	0	0	0	0.72381	1	5159	5159		30.504	5.0535	1	75121	+		12182	18303	7900	7932	12373	12373					-0.043520857471321506
GDSKFVVVN	9	Unmodified	_GDSKFVVVN_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.17596435546875	3	322.174792	963.502546	3.677	0.0011846	-0.18025	-5.8071E-05	3.4968	0.0011266	322.17478465838667	16.198	0.090145	16.198	16.166	16.256	0					5	3	2	0	0	0	0.57706	1	3848	3848		24.519	0	1	55238	+		12183	17429	7901	7933	12374	12374					0.019334810348709652
GDSKPPRFQ	9	Unmodified	_GDSKPPRFQ_					0	0	0		ENST00000462710.5_1_1:24974544-24974727:+|nuORF	ENST00000462710.5_1_1:24974544-24974727:+|nuORF	ENST00000462710.5_1_1:24974544-24974727:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2649536132812	2	516.267073	1030.51959	0.26836	0.00013855	-3.7013	-0.0019108	-3.4329	-0.0017723	516.264908281724	36.852	0.097687	36.852	36.793	36.891	0					9	5	2	0	0	0	0.54267	1	12081	12081		27.882	0	1	32096			12184	9745	7902	7934	12375	12375					0.005554016406676965
GDSLHLVAV	9	Unmodified	_GDSLHLVAV_					0	0	0		ENST00000563810.1_1_8:41685974-41686286:-|nuORF	ENST00000563810.1_1_8:41685974-41686286:-|nuORF	ENST00000563810.1_1_8:41685974-41686286:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.75323486328125	2	455.753267	909.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.257	1	29.257	28.757	29.757	0								0	0	0	0.30835	1	9509	9509		33.516	0.70317	1				12185	10736	7903	7935	12376	12376					0.033614983804341136
GDSYPTRQIY	10	Unmodified	_GDSYPTRQIY_					0	0	0			REV__ENSG00000127990|ENST00000648936|SGCE	REV__ENSG00000127990|ENST00000648936|SGCE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2901000976562	2	600.288202	1198.56185	3.1211	0.0018736	0.435	0.00026113	3.5562	0.0021347	600.288388814637	42.762	0.95949	42.762	42.398	43.357	0					59	29	3	0	0	0	0.62235	1	16943	16943		31.53	2.3803	1	179530	+		12186	14504	7904	7936	12377	12377					-0.029486677416116436
GDTIIILIQ	9	Unmodified	_GDTIIILIQ_					0	0	0			REV__VWA2|p.V157I|1|0.15|ENSG00000165816|chr10:114272837-114272837|G/A|missense_variant	REV__VWA2|p.V157I|1|0.15|ENSG00000165816|chr10:114272837-114272837|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2998962402344	2	493.30005	984.585547	0.86881	0.00042858	-1.1912	-0.00058763	-0.32241	-0.00015904	493.2994174397917	36.926	0.30756	36.926	36.761	37.068	0					16	6	4	0	0	0	0.47473	1	14377	14377		27.882	1.1893	1	663130	+		12187	22283	7905	7937	12378	12378					0.09263797762878312
GDVIPDDPEI	10	Unmodified	_GDVIPDDPEI_					0	0	0		NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.1736755371094	3	357.173117	1068.49752	1.4348	0.00051248	0.13212	4.7188E-05	1.5669	0.00055967	357.17315488544057	21.216	0.36246	21.216	21.112	21.475	0					19	7	3	0	0	0	0.64178	1	7012	7012		33.922	33.922	1	9954500			12188	7350	7906	7938	12379	12379					-0.03398867618420809
GDVKNLIK	8	Unmodified	_GDVKNLIK_					0	0	0			REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.77117919921875	2	443.77146	885.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.724	1	25.724	25.224	26.224	0								0	0	0	1.7419	1	7771	7771		60.972	0	1		+		12189	22215	7907	7939	12380	12380					0.08102375277144347
GDVNLLAINEF	11	Unmodified	_GDVNLLAINEF_					0	0	0		tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.8165283203125	2	602.814053	1203.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.736	1	18.736	18.236	19.236	0								0	0	0	0.40263	1	4712	4712		33.922	3.6039	1				12190	22713	7908	7940	12381	12381					0.01989075952269559
GDVQILNKY	9	Unmodified	_GDVQILNKY_					0	0	0		ENSG00000103044|ENST00000569188|HAS3;ENSG00000170961|ENST00000303924|HAS2	ENSG00000103044|ENST00000569188|HAS3;ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2843017578125	2	525.284931	1048.55531	0.56617	0.0002974	-2.8018	-0.0014718	-2.2357	-0.0011744	525.2842242864734	27.329	0.27154	27.329	27.204	27.476	0					10	5	3	0	0	0	0.27123	1	9774	9774		45.972	15.655	1	165510			12191	2208;6270	7909	7941	12382	12382					0.03297439097673305
GDWIFTIR	8	Unmodified	_GDWIFTIR_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2682189941406	2	504.269084	1006.52362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.959	1	12.959	12.459	13.459	0								0	0	0	1.7419	1	3043	3043		16.473	2.336	1				12192	2178	7910	7942	12383	12383					0.020614911343727726
GDWLQRVVP	9	Unmodified	_GDWLQRVVP_					0	0	0			REV__ENSG00000104951|ENST00000391826|IL4I1	REV__ENSG00000104951|ENST00000391826|IL4I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.1979064941406	3	357.197819	1068.57163	1.4348	0.00051249	-1.0641	-0.00038011	0.3706	0.00013238	357.19742493289147	28.67	0.73548	28.67	28.515	29.251	0					34	15	4	0	0	0	0.44593	1	10521	10521		37.812	7.4938	1	2980000	+		12193	13746	7911	7943	12384	12384					0.04008565054414248
GDYERAVR	8	Unmodified	_GDYERAVR_					0	0	0		P3H2|p.V176Rfs*3|1|0.25|ENSG00000090530|chr3:189995398-189995399|-/A|frameshift_variant;ENSG00000090530|ENST00000319332|P3H2	P3H2|p.V176Rfs*3|1|0.25|ENSG00000090530|chr3:189995398-189995399|-/A|frameshift_variant	P3H2|p.V176Rfs*3|1|0.25|ENSG00000090530|chr3:189995398-189995399|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.24407958984375	2	483.243598	964.472643	-0.099222	-4.7948E-05	1.3809	0.00066733	1.2817	0.00061938	483.244094498648	24.665	0.26676	24.665	24.511	24.778	0					13	5	3	0	0	0	0.63077	1	8649	8649		44.117	1.7207	1	593760			12194	1837	7912	7944	12385	12385					-0.011014579104767108
GDYERAVR	8	Unmodified	_GDYERAVR_					0	0	0		P3H2|p.V176Rfs*3|1|0.25|ENSG00000090530|chr3:189995398-189995399|-/A|frameshift_variant;ENSG00000090530|ENST00000319332|P3H2	P3H2|p.V176Rfs*3|1|0.25|ENSG00000090530|chr3:189995398-189995399|-/A|frameshift_variant	P3H2|p.V176Rfs*3|1|0.25|ENSG00000090530|chr3:189995398-189995399|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2442626953125	2	483.243598	964.472643	-0.59635	-0.00028818	4.4435	0.0021473	3.8471	0.0018591	483.2439559158458	24.639	0.2575	24.639	24.53	24.787	0					17	5	5	0	0	0	0.54629	1	8514	8514		55.504	13.108	1	855520			12195	1837	7912	7944	12386	12386					-0.011014579104767108
GDYKINLK	8	Unmodified	_GDYKINLK_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;ENST00000562118.1_1_16:68857288-68867399:+|nuORF	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7686767578125	2	475.768917	949.523281	0.61749	0.00029378	-1.1683	-0.00055583	-0.55079	-0.00026205	475.7684486404565	29.578	0.18727	29.578	29.456	29.644	0					6	4	2	0	0	0	0.37378	1	10575	10575		73.975	0	1	134600			12196	1185	7913	7945	12387	12387					0.046500714145167876
GDYKTIAK	8	Unmodified	_GDYKTIAK_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2474365234375	2	448.247818	894.481082	-0.098433	-4.4122E-05	-0.6296	-0.00028222	-0.72804	-0.00032634	448.24758756913855	22.326	0.21366	22.326	22.22	22.434	0					9	4	3	0	0	0	0.57171	1	7550	7550		52.937	3.4952	1	448500			12197	1924	7914	7946	12388	12388					0.029620960061379265
GDYKTIAK	8	Unmodified	_GDYKTIAK_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.24749755859375	2	448.247818	894.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.32	1	22.32	21.82	22.82	0								0	0	0	1.7419	1	7405	7405		58.23	0	1				12198	1924	7914	7946	12389	12389					0.029620960061379265
GEAAKSVKL	9	Unmodified	_GEAAKSVKL_					0	0	0		ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7685852050781	2	451.768917	901.523281	-0.013917	-6.2873E-06	-0.24189	-0.00010928	-0.25581	-0.00011557	451.7687656043949	19.707	0.20093	19.707	19.636	19.837	0					11	6	3	0	0	0	0.037712	1	5142	5142		101.46	0	1	467160			12199	7316	7915	7947	12390	12390					0.06858071414524147
GEAAKSVKL	9	Unmodified	_GEAAKSVKL_					0	0	0		ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7687683105469	2	451.768917	901.523281	0.66305	0.00029955	-0.64703	-0.00029231	0.016025	7.2396E-06	451.7686426957286	20.07	0.38475	20.07	19.971	20.356	0					20	8	4	0	0	0	0.015992	1	6155	6155		128.6	2.7882	1	8121700			12200	7316	7915	7947	12391	12391					0.06858071414524147
GEAAKSVKL	9	Unmodified	_GEAAKSVKL_					0	0	0		ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.768798828125	2	451.768917	901.523281	-1.1927	-0.00053881	0.62514	0.00028242	-0.56753	-0.00025639	451.76920402145663	19.759	0.19837	19.759	19.682	19.881	0					19	7	4	0	0	0	0.037712	1	5393	5393		101.46	0	1	1082200			12201	7316	7915	7947	12392	12392					0.06858071414524147
GEAAKSVKL	9	Unmodified	_GEAAKSVKL_					0	0	0		ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7683410644531	2	451.768917	901.523281	0.4093	0.00018491	-0.18677	-8.4378E-05	0.22252	0.00010053	451.7689071169794	19.802	0.14423	19.802	19.716	19.86	0					6	3	2	0	0	0	0.11411	1	5439	5439		76.17	0	1	263370			12202	7316	7915	7947	12393	12393					0.06858071414524147
GEAAKSVKL	9	Unmodified	_GEAAKSVKL_					0	0	0		ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7685546875	2	451.768917	901.523281	-0.10214	-4.6143E-05	-0.46042	-0.000208	-0.56256	-0.00025415	451.76871023022153	19.785	0.2287	19.785	19.703	19.932	0					8	5	2	0	0	0	0.061298	1	5450	5450		91.265	0	1	909500			12203	7316	7915	7947	12394	12394					0.06858071414524147
GEAAKSVKL	9	Unmodified	_GEAAKSVKL_					0	0	0		ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7687683105469	2	451.768917	901.523281	-0.40866	-0.00018462	0.0085298	3.8535E-06	-0.40013	-0.00018076	451.768930597523	19.952	0.41784	19.952	19.842	20.26	0					13	8	3	0	0	0	0.037712	1	6265	6265		101.46	0	1	2934500			12204	7316	7915	7947	12395	12395					0.06858071414524147
GEAALGRTGI	10	Unmodified	_GEAALGRTGI_					0	0	0			REV__nc|ENSG00000080854|Q9UPX0|IGSF9B	REV__nc|ENSG00000080854|Q9UPX0|IGSF9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7624816894531	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.159	1	28.159	27.659	28.659	0								0	0	0	0.20542	1	10168	10168		63.534	5.3039	1		+		12205	13300	7916	7948	12396	12396					0.03467999266365496
GEAARTSTM	9	Unmodified	_GEAARTSTM_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2160339355469	2	462.216192	922.41783	0.71959	0.00033261	-0.91868	-0.00042463	-0.19909	-9.2024E-05	462.21589062358953	16.904	0.21154	16.904	16.801	17.013	0					8	4	3	0	0	0	0.04067	1	4941	4941		98.582	46.283	1	508700			12206	11499	7917	7949	12397	12397					-0.04648212773417981
GEAEFNRIM	9	Unmodified	_GEAEFNRIM_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7534790039062	2	533.752941	1065.49133	1.753	0.00093565	-0.11405	-6.0874E-05	1.6389	0.00087477	533.7523120414945	36.336	0.22922	36.336	36.242	36.472	0					14	6	3	0	0	0	0.10915	1	14142	14142		77.318	27.876	1	439120			12207	3641	7918	7950	12398	12398					-0.038796643309296996
GEAEFNRIM	9	Unmodified	_GEAEFNRIM_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7532348632812	2	533.752941	1065.49133	1.8072	0.00096459	-0.16108	-8.5976E-05	1.6461	0.00087861	533.752538069773	36.273	0.46464	36.273	36.064	36.529	0					15	9	3	0	0	0	0.19605	1	14093	14093		62.107	16.135	1	547630			12208	3641	7918	7950	12399	12399					-0.038796643309296996
GEAEGLMKV	9	Unmodified	_GEAEGLMKV_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;SLC38A10|p.R413W|1|0.54|ENSG00000157637|chr17:81260289-81260289|G/A|missense_variant;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2384948730469	2	467.239135	932.463718	-0.4364	-0.0002039	-0.34417	-0.00016081	-0.78056	-0.00036471	467.2390009689759	32.669	0.1391	32.669	32.617	32.757	0					9	5	2	0	0	0	0.36892	1	10575	10575		44.377	10.205	1	77936			12209	5226;11602	7919	7951	12400	12400					-0.005215675911699691
GEAEGLMKV	9	Unmodified	_GEAEGLMKV_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;SLC38A10|p.R413W|1|0.54|ENSG00000157637|chr17:81260289-81260289|G/A|missense_variant;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2388916015625	2	467.239135	932.463718	-0.65564	-0.00030634	0.087286	4.0783E-05	-0.56835	-0.00026556	467.2393173270554	32.943	0.20375	32.943	32.854	33.057	0					16	5	4	0	0	0	0.035062	1	12141	12141		104.06	27.283	1	487510			12210	5226;11602	7919	7951	12401	12401					-0.005215675911699691
GEAEGLMKV	9	Unmodified	_GEAEGLMKV_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;SLC38A10|p.R413W|1|0.54|ENSG00000157637|chr17:81260289-81260289|G/A|missense_variant;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2386779785156	2	467.239135	932.463718	0.65081	0.00030408	-1.4337	-0.00066988	-0.78288	-0.00036579	467.23843313875017	32.928	0.18583	32.928	32.834	33.02	0					10	4	3	0	0	0	0.032052	1	12565	12565		107.01	21.847	1	673190			12211	5226;11602	7919	7951	12402	12402					-0.005215675911699691
GEAEGLMKV	9	Unmodified	_GEAEGLMKV_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;SLC38A10|p.R413W|1|0.54|ENSG00000157637|chr17:81260289-81260289|G/A|missense_variant;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.239013671875	2	467.239135	932.463718	-2.2163	-0.0010355	2.0253	0.00094629	-0.19102	-8.9253E-05	467.2399122607532	32.717	0.15557	32.717	32.65	32.805	0					8	4	2	0	0	0	0.16806	1	11399	11399		65.465	25.407	1	134210			12212	5226;11602	7919	7951	12403	12403					-0.005215675911699691
GEAGITRSV	9	Unmodified	_GEAGITRSV_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ZC3HAV1|p.F145Lfs*49|2|0.2|ENSG00000105939|chr7:139089633-139089633|A/-|frameshift_variant	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2402648925781	2	445.240524	888.466495	0.56193	0.00025019	-1.4903	-0.00066355	-0.92839	-0.00041336	445.239838480524	23.304	0.16585	23.304	23.246	23.412	0					5	3	2	0	0	0	0.054723	1	8026	8026		93.598	28.132	1	390250			12213	2409	7920	7952	12404	12404					0.017800238579980032
GEAIQQRLAS	10	Unmodified	_GEAIQQRLAS_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.1976623535156	3	358.196367	1071.56727	3.0839	0.0011046	0.58414	0.00020924	3.668	0.0013139	358.1965471198552	28.034	0.46606	28.034	27.926	28.392	0					21	9	4	0	0	0	0.6796	1	10123	10123		23.378	7.4573	1	1174500	+		12214	21137	7921	7953	12405	12405					0.034350558408505094
GEAKCHKS	8	Unmodified	_GEAKCHKS_					0	0	0		ENST00000441488.6_1_11:67925157-67938746:-|nuORF;ENSG00000110066|ENST00000304363|KMT5B	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2088928222656	2	430.20817	858.401786	-0.24522	-0.0001055	1.4425	0.00062058	1.1973	0.00051508	430.2086030920811	16	0.1083	16	15.948	16.057	0					6	4	2	0	0	0	0.68432	1	3575	3575		35.618	2.8059	1	93905			12215	2607	7922	7954	12406	12406					-0.033078742196494204
GEAKEREAL	9	Unmodified	_GEAKEREAL_					0	0	0		ENST00000474064.5_1_1:45098020-45115698:+|nuORF;ENST00000475378.5_1_1:45097966-45116444:+|nuORF;ENSG00000187147|ENST00000361799|RNF220;ENST00000480686.5_1_1:45110332-45115698:+|nuORF;nc|ENSG00000187147|Q5VTB9-3|RNF220	ENST00000474064.5_1_1:45098020-45115698:+|nuORF	ENST00000474064.5_1_1:45098020-45115698:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7636413574219	2	501.764363	1001.51417	1.1332	0.00056861	-2.1961	-0.0011019	-1.0628	-0.00053329	501.7633687238852	17.573	0.16772	17.573	17.515	17.683	0					9	3	4	0	0	0	0.085655	1	5107	5107		82.75	0	1	811440			12216	7185	7923	7955	12407	12407					0.013476780581868297
GEAKPRKTL	9	Unmodified	_GEAKPRKTL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.3014221191406	2	500.300916	998.587279	0.36072	0.00018047	0.80088	0.00040068	1.1616	0.00058115	500.3014244645376	14.468	0.088463	14.468	14.425	14.514	0					7	4	2	0	0	0	0.24095	1	2985	2985		56.721	14.325	1	65571			12217	1930	7924	7956	12408	12408					0.08792851571479332
GEAKPRKTL	9	Unmodified	_GEAKPRKTL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.30084228515625	2	500.300916	998.587279	0.65888	0.00032964	-0.94101	-0.00047079	-0.28212	-0.00014115	500.3004495338377	14.781	0.34331	14.781	14.693	15.037	0					14	8	2	0	0	0	0.19952	1	3667	3667		61.691	12.155	1	939090			12218	1930	7924	7956	12409	12409					0.08792851571479332
GEAKPRKTL	9	Unmodified	_GEAKPRKTL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.3008117675781	2	500.300916	998.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.724	1	14.724	14.224	15.224	0								0	0	0	0.10319	1	3882	3882		70.816	12.034	1				12219	1930	7924	7956	12410	12410					0.08792851571479332
GEAKPRKTL	9	Unmodified	_GEAKPRKTL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.3016662597656	2	500.300916	998.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.52	1	14.52	14.02	15.02	0								0	0	0	0.23445	1	3088	3088		45.972	10.354	1				12220	1930	7924	7956	12411	12411					0.08792851571479332
GEAKPRKTL	9	Unmodified	_GEAKPRKTL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.30078125	2	500.300916	998.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.687	1	14.687	14.187	15.187	0								0	0	0	0.10319	1	3710	3710		70.816	27.952	1				12221	1930	7924	7956	12412	12412					0.08792851571479332
GEAKVKKQL	9	Unmodified	_GEAKVKKQL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.8111572265625	2	500.811116	999.60768	0.65771	0.00032939	-0.60013	-0.00030055	0.057581	2.8837E-05	500.81081300920107	15.204	0.17977	15.204	15.117	15.297	0					7	4	2	0	0	0	0.012231	1	3886	3886		136.27	12.188	1	717020			12222	3441	7925	7957	12413	12413					0.10786022231286552
GEAKVKKQLV	10	Unmodified	_GEAKVKKQLV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3455810546875	2	550.345323	1098.67609	0.54853	0.00030188	0.22241	0.0001224	0.77095	0.00042429	550.3454304018426	17.536	0.1713	17.536	17.448	17.619	0					11	4	3	0	0	0	0.049666	1	4973	4973		109.44	34.395	1	1389000			12223	3441	7926	7958	12414	12414					0.1307026681113257
GEALGLAAVI	10	Unmodified	_GEALGLAAVI_					0	0	0			REV__ENSG00000169908|ENST00000305366|TM4SF1	REV__ENSG00000169908|ENST00000305366|TM4SF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2710266113281	2	457.271293	912.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.142	1	31.142	30.642	31.642	0								0	0	0	0.33119	1	9987	9987		45.952	10.334	1		+		12224	16342	7927	7959	12415	12415					0.06826955557278325
GEALGLKQAV	10	Unmodified	_GEALGLKQAV_					0	0	0		ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.1940612792969	3	329.194075	984.560395	0.28376	9.3412E-05	-0.42311	-0.00013929	-0.13935	-4.5875E-05	329.19390526052445	21.68	0.13936	21.68	21.605	21.744	0					9	4	3	0	0	0	0.65213	1	6002	6002		26.063	0.48933	1	580460			12225	8059	7928	7960	12416	12416					0.06749742960289495
GEALGRLL	8	Unmodified	_GEALGRLL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;CON__P02070;CON__Q3SX09;ENSG00000213931|ENST00000396895|HBE1	ENSG00000244734|ENST00000335295|HBB;ENSG00000213931|ENST00000396895|HBE1	ENSG00000244734|ENST00000335295|HBB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.75030517578125	2	414.750527	827.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.615	1	38.615	38.115	39.115	0								0	0	0	1.7419	1	15157	15157		60.972	2.19	1				12226	7970;7800	7929	7961	12417	12417					0.06585819588610775
GEAPAPPPL	9	Unmodified	_GEAPAPPPL_					0	0	0		IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3	IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant	IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.7275695800781	2	424.729261	847.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.924	1	14.924	14.424	15.424	0								0	0	0	0.10093	1	3977	3977		71.378	0	1				12227	6492	7930	7962	12418	12418					0.014144244603699008
GEAPGRASL	9	Unmodified	_GEAPGRASL_					0	0	0		ENST00000577380.5_1_17:73467910-73481983:+|nuORF;ENST00000585277.1_1_17:73467910-73481792:+|nuORF	ENST00000577380.5_1_17:73467910-73481983:+|nuORF	ENST00000577380.5_1_17:73467910-73481983:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2269287109375	2	429.227417	856.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.053	1	22.053	21.553	22.553	0								0	0	0	0.30009	1	6176	6176		35.152	4.6484	1				12228	10838	7931	7963	12419	12419					0.0063175468651479605
GEAPGRASL	9	Unmodified	_GEAPGRASL_					0	0	0		ENST00000577380.5_1_17:73467910-73481983:+|nuORF;ENST00000585277.1_1_17:73467910-73481792:+|nuORF	ENST00000577380.5_1_17:73467910-73481983:+|nuORF	ENST00000577380.5_1_17:73467910-73481983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2272644042969	2	429.227417	856.44028	0.95191	0.00040859	-1.5667	-0.00067247	-0.61479	-0.00026388	429.22666915404994	22.261	0.26454	22.261	22.102	22.367	0					11	5	3	0	0	0	0.16806	1	7524	7524		65.465	12.529	1	575120			12229	10838	7931	7963	12420	12420					0.0063175468651479605
GEAQLRIAM	9	Unmodified	_GEAQLRIAM_					0	0	0			REV__ENSG00000023892|ENST00000316637|DEF6	REV__ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7684326171875	2	494.765852	987.51715	3.4303	0.0016972	3.0411	0.0015046	6.4714	0.0032018	494.76743188889606	33.455	0.13435	33.455	33.392	33.526	0					8	5	2	0	0	0	0.51817	1	11235	11235		30.504	3.8107	1	58641	+		12230	12948	7932	7964	12421	12421					0.022892299113550507
GEAQVGKTSL	10	Unmodified	_GEAQVGKTSL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000562708.5_1_16:718199-718465:+|nuORF;ENST00000569675.5_1_16:718199-718652:+|nuORF;ENST00000562598.5_1_16:718199-720176:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2664489746094	2	495.266739	988.518924	-0.064055	-3.1724E-05	-0.20837	-0.0001032	-0.27243	-0.00013492	495.2666259286226	23.868	0.18827	23.868	23.798	23.986	0					14	7	3	0	0	0	0.27406	1	6960	6960		70.399	6.8647	1	243640			12231	4416;10766	7933	7965	12422	12422					0.024205622009731087
GEAQVGKTSL	10	Unmodified	_GEAQVGKTSL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000562708.5_1_16:718199-718465:+|nuORF;ENST00000569675.5_1_16:718199-718652:+|nuORF;ENST00000562598.5_1_16:718199-720176:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.26617431640625	2	495.266739	988.518924	-1.24	-0.00061411	0.5088	0.00025199	-0.73116	-0.00036212	495.2669115472271	23.884	0.13964	23.884	23.827	23.967	0					14	5	3	0	0	0	0.13022	1	7228	7228		90.149	35.426	1	346480			12232	4416;10766	7933	7965	12423	12423					0.024205622009731087
GEAQVGKTSL	10	Unmodified	_GEAQVGKTSL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000562708.5_1_16:718199-718465:+|nuORF;ENST00000569675.5_1_16:718199-718652:+|nuORF;ENST00000562598.5_1_16:718199-720176:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2668762207031	2	495.266739	988.518924	0.08529	4.2241E-05	0.65151	0.00032267	0.7368	0.00036491	495.2670409869217	23.929	0.16211	23.929	23.844	24.006	0					8	4	2	0	0	0	0.010125	1	7377	7377		142.36	59.611	1	213250			12233	4416;10766	7933	7965	12424	12424					0.024205622009731087
GEAQVGKTSL	10	Unmodified	_GEAQVGKTSL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000562708.5_1_16:718199-718465:+|nuORF;ENST00000569675.5_1_16:718199-718652:+|nuORF;ENST00000562598.5_1_16:718199-720176:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2667236328125	2	495.266739	988.518924	-2.4399	-0.0012084	2.6185	0.0012969	0.1786	8.8455E-05	495.26800899449233	23.938	0.25022	23.938	23.828	24.078	0					13	6	3	0	0	0	0.06456	1	7369	7369		104.42	35.577	1	296770			12234	4416;10766	7933	7965	12425	12425					0.024205622009731087
GEAQVGKTSL	10	Unmodified	_GEAQVGKTSL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000562708.5_1_16:718199-718465:+|nuORF;ENST00000569675.5_1_16:718199-718652:+|nuORF;ENST00000562598.5_1_16:718199-720176:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2665100097656	2	495.266739	988.518924	0.93296	0.00046206	-1.4415	-0.00071393	-0.50855	-0.00025187	495.2660899588393	24.071	0.46646	24.071	23.964	24.43	0					15	9	4	0	0	0	0.0088982	1	8262	8262		147.73	61.87	1	1504600			12235	4416;10766	7933	7965	12426	12426					0.024205622009731087
GEARLTFL	8	Unmodified	_GEARLTFL_					0	0	0		OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant	OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.75579833984375	2	453.75581	905.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.784	1	42.784	42.284	43.284	0								0	0	0	1.7419	1	16780	16780		31.53	3.6476	1				12236	1848	7934	7966	12427	12427					0.04053802243026894
GEARRLRC	8	Unmodified	_GEARRLRC_					0	0	0		nc|ENSG00000289701|Q9H257-3|CARD9;nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9	nc|ENSG00000289701|Q9H257-3|CARD9	nc|ENSG00000289701|Q9H257-3|CARD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7624816894531	2	480.761435	959.508317	2.3372	0.0011236	-0.80112	-0.00038515	1.536	0.00073847	480.76130507140965	30.464	0.65105	30.464	30.163	30.814	0					34	13	4	0	0	0	0.41952	1	11271	11271		68.485	68.485	1	2015900			12237	7219	7935	7967	12428	12428					0.026943010655372746
GEARVGSEL	9	Unmodified	_GEARVGSEL_					0	0	0		GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.238525390625	2	459.237981	916.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.537	1	24.537	24.037	25.037	0								0	0	0	0.17415	1	7666	7666		54.722	8.7501	1				12238	11174	7936	7968	12429	12429					-0.0001628000460414114
GEARVLAQM	9	Unmodified	_GEARVLAQM_					0	0	0		ENST00000579241.1_1_17:73486365-73488110:+|nuORF;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;KIAA0195|p.S895Pfs*13|5|0.32|ENSG00000177728|chr17:75494982-75494982|C/-|frameshift_variant;KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94	ENST00000579241.1_1_17:73486365-73488110:+|nuORF	ENST00000579241.1_1_17:73486365-73488110:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7574157714844	2	487.758027	973.5015	0.73158	0.00035683	-0.72046	-0.00035141	0.011126	5.4267E-06	487.75752151740005	31.131	0.22077	31.131	31.043	31.264	0					7	5	2	0	0	0	0.21263	1	11317	11317		60.118	6.7668	1	132800			12239	6685	7937	7969	12430	12430					0.013689433943113727
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2596740722656	2	504.261456	1006.50836	-0.062618	-3.1576E-05	-0.59414	-0.0002996	-0.65676	-0.00033118	504.26091148952236	28.75	0.17769	28.75	28.702	28.88	0					12	6	3	0	0	0	0.034688	1	8998	8998		98.582	18.869	1	264420			12240	2899	7938	7970	12431	12431					0.005365795465195333
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.26068115234375	2	504.261456	1006.50836	-0.056526	-2.8504E-05	-1.2392	-0.00062488	-1.2957	-0.00065338	504.26075698735343	29.043	0.21195	29.043	28.957	29.169	0					16	5	4	0	0	0	0.0051572	2	10317	10303;10317		167.23	57.109	1	1362900			12241	2899	7938	7970	12432;12433	12433					0.005365795465195333
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2592468261719	2	504.261456	1006.50836	-0.83173	-0.00041941	0.32058	0.00016165	-0.51116	-0.00025776	504.26164981675566	28.792	0.27383	28.792	28.693	28.966	0					20	10	3	0	0	0	0.16962	1	9292	9292		66.962	10.528	1	306980			12242	2899	7938	7970	12434	12434					0.005365795465195333
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2613220214844	2	504.261456	1006.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.038	1	29.038	28.538	29.538	0								0	0	0	0.0012875	1	10708	10708		154.12	43.998	1				12243	2899	7938	7970	12435	12435					0.005365795465195333
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.26153564453125	2	504.261456	1006.50836	-2.0155	-0.0010163	1.5554	0.00078433	-0.46011	-0.00023202	504.26225535240246	28.832	0.26764	28.832	28.699	28.967	0					15	6	3	0	0	0	0.01942	1	9611	9611		129.42	44.26	1	488140			12244	2899	7938	7970	12436	12436					0.005365795465195333
GEASVCALAK	10	Unmodified	_GEASVCALAK_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7425231933594	2	474.744585	947.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.596	1	27.596	27.096	28.096	0								0	0	0	0.21707	1	8810	8810		62.107	3.8775	1		+		12245	15398	7939	7971	12437	12437					-0.0012216521689651927
GEASVCALAK	10	Unmodified	_GEASVCALAK_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7430725097656	2	474.744585	947.474617	-2.6247	-0.0012461	-0.76419	-0.00036279	-3.3889	-0.0016089	474.7442890320212	27.611	0.3811	27.611	27.483	27.864	0					13	9	2	0	0	0	0.28036	1	9062	9062		69.628	0.8408	1	292110	+		12246	15398	7939	7971	12438	12438					-0.0012216521689651927
GEATPIHP	8	Unmodified	_GEATPIHP_					0	0	0			REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.2110900878906	2	411.211235	820.407917	1.0104	0.0004155	-1.1338	-0.00046624	-0.12338	-5.0735E-05	411.2107786191608	17.699	0.20871	17.699	17.579	17.788	0					11	5	3	0	0	0	0.57802	1	5051	5051		52.299	0.96372	1	1220400	+		12247	19552	7940	7972	12439	12439					-0.009470327164763148
GEATPIHP	8	Unmodified	_GEATPIHP_					0	0	0			REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.2113037109375	2	411.211235	820.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.667	1	17.667	17.167	18.167	0								0	0	0	1.7419	1	5287	5287		62.978	11.643	1		+		12248	19552	7940	7972	12440	12440					-0.009470327164763148
GEATPIHP	8	Unmodified	_GEATPIHP_					0	0	0			REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.2115783691406	2	411.211235	820.407917	-0.08235	-3.3863E-05	0.66686	0.00027422	0.5845	0.00024035	411.21157256057495	17.495	0.20089	17.495	17.376	17.577	0					10	6	2	0	0	0	0.6282	1	4372	4372		44.531	5.5096	1	135140	+		12249	19552	7940	7972	12441	12441					-0.009470327164763148
GEAVARKI	8	Unmodified	_GEAVARKI_					0	0	0			REV__nc|ENSG00000113391|Q8WUF8-2|ARB2A	REV__nc|ENSG00000113391|Q8WUF8-2|ARB2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.25616455078125	2	422.255977	842.497401	-1.2011	-0.00050715	0.82912	0.0003501	-0.37193	-0.00015705	422.25646238746333	26.739	0.11396	26.739	26.686	26.8	0					7	4	2	0	0	0	0.65276	1	8450	8450		40.573	1.7665	1	51923	+		12250	14038	7941	7973	12442	12442					0.06985221962906962
GEAVELRSL	9	Unmodified	_GEAVELRSL_					0	0	0		ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-3|PRXL2B;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2683410644531	2	487.269281	972.52401	-0.23098	-0.00011255	1.3763	0.00067061	1.1453	0.00055806	487.26982114156834	35.015	0.17365	35.015	34.89	35.064	0					6	5	2	0	0	0	0.3269	1	12442	12442		47.96	0.043923	1	35321			12251	5234	7942	7974	12443	12443					0.03664866063570571
GEAVELRSL	9	Unmodified	_GEAVELRSL_					0	0	0		ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-3|PRXL2B;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.26885986328125	2	487.269281	972.52401	0.81303	0.00039617	-1.4166	-0.00069027	-0.60358	-0.00029411	487.26861811409407	35.17	0.164	35.17	35.065	35.229	0					6	3	2	0	0	0	0.13726	1	13566	13566		70.816	17.88	1	504290			12252	5234	7942	7974	12444	12444					0.03664866063570571
GECIKKVR	8	Unmodified	_GECIKKVR_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7745666503906	2	466.770937	931.527321	4.0279	0.0018801	3.3634	0.0015699	7.3912	0.00345	466.7726068132758	22.334	0.10765	22.334	22.269	22.376	0					6	3	2	0	0	0	0.32815	1	6565	6565		79.451	2.6044	1	123220	+		12253	12975	7943	7975	12445	12445					0.05881837636582077
GECLPLPVL	9	Carbamidomethyl (C)	_GEC(Carbamidomethyl (C))LPLPVL_	GEC(1)LPLPVL		GEC(42)LPLPVL		0	1	0		ENSG00000171243|ENST00000307068|SOSTDC1;nc|ENSG00000171243|Q6X4U4-2|SOSTDC1	ENSG00000171243|ENST00000307068|SOSTDC1	ENSG00000171243|ENST00000307068|SOSTDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2730407714844	2	499.272978	996.531403	0.67532	0.00033717	-1.0015	-0.0005	-0.32613	-0.00016283	499.2726238004674	38.159	0.2673	38.159	38.072	38.339	0					23	11	3	0	0	0	0.39123	1	14473	14473		42.474	6.0277	1	273230			12254	6287	7944	7976	12446	12446	267				0.032998823396496846
GEDAPVRPL	9	Unmodified	_GEDAPVRPL_					0	0	0		ENST00000484115.5_1_3:49027419-49028262:+|nuORF;nc|ENSG00000178467|Q9NXG6-2|P4HTM;ENSG00000178467|ENST00000383729|P4HTM;ENST00000472301.5_1_3:49027419-49042675:+|nuORF;nc|ENSG00000178467|Q9NXG6-3|P4HTM	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.255615234375	2	477.256174	952.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.996	1	27.996	27.496	28.496	0								0	0	0	0.17378	1	9846	9846		54.776	12.38	1				12255	6718	7945	7977	12447	12447					0.019645968920940504
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.73748779296875	2	490.737814	979.461075	-0.054029	-2.6514E-05	-0.3704	-0.00018177	-0.42443	-0.00020828	490.73756568497714	33.719	0.30767	33.719	33.586	33.894	0					21	12	2	0	0	0	0.43426	1	10968	10968		38.806	2.3594	1	118200			12256	6055	7946	7978	12448	12448					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7376403808594	2	490.737814	979.461075	-0.49977	-0.00024525	0.71115	0.00034899	0.21139	0.00010374	490.7379787054573	34.025	0.46466	34.025	33.869	34.334	0					23	12	3	0	0	0	0.036372	1	12614	12614		102.77	46.052	1	602750			12257	6055	7946	7978	12449	12449					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7376708984375	2	490.737814	979.461075	-1.2577	-0.0006172	0.55775	0.00027371	-0.69994	-0.00034349	490.73815524122307	33.772	0.24725	33.772	33.698	33.945	0					20	9	3	0	0	0	0.028654	1	11350	11350		110.34	54.833	1	200270			12258	6055	7946	7978	12450	12450					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7374572753906	2	490.737814	979.461075	0.59216	0.0002906	-0.48422	-0.00023763	0.10794	5.2968E-05	490.7375748267501	34.004	0.35541	34.004	33.829	34.185	0					15	8	2	0	0	0	0.032656	1	13034	13034		106.42	56.391	1	1107000			12259	6055	7946	7978	12451	12451					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7372131347656	2	490.737814	979.461075	-0.093641	-4.5953E-05	-0.29872	-0.00014659	-0.39236	-0.00019254	490.73782496152324	33.782	0.33333	33.782	33.638	33.972	0					18	9	3	0	0	0	0.13519	1	11884	11884		71.296	19.96	1	117780			12260	6055	7946	7978	12452	12452					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.73773193359375	2	490.737814	979.461075	0.784	0.00038474	-0.45335	-0.00022248	0.33065	0.00016226	490.73752491921016	33.948	0.68734	33.948	33.802	34.489	0					19	14	2	0	0	0	0.05357	1	12971	12971		94.006	51.142	1	703200			12261	6055	7946	7978	12453	12453					-0.02947699724472841
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.73223876953125	2	482.732729	963.450904	0.06596	3.1841E-05	-0.55167	-0.00026631	-0.48571	-0.00023447	482.7323113717006	18.924	0.18923	18.924	18.813	19.002	0					11	5	3	0	0	0	0.18316	1	4795	4795		81.525	30.332	1	123770			12262	4015	7947	7979	12454	12454					-0.032283074497058806
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.732666015625	2	482.732729	963.450904	-0.12598	-6.0815E-05	0.39029	0.0001884	0.26431	0.00012759	482.7326872937084	19.255	0.24665	19.255	19.155	19.402	0					11	5	3	0	0	0	0.049666	1	5787	5787		109.44	37.561	1	1017800			12263	4015	7947	7979	12455	12455					-0.032283074497058806
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7327575683594	2	482.732729	963.450904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.93	1	18.93	18.43	19.43	0								0	0	0	0.26178	1	5037	5037		56.632	12.515	1				12264	4015	7947	7979	12456	12456					-0.032283074497058806
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7324523925781	2	482.732729	963.450904	0.68571	0.00033101	-2.8814	-0.001391	-2.1957	-0.00106	482.7310400117688	19.156	0.50986	19.156	19.017	19.527	0					18	10	3	0	0	0	0.13663	1	6029	6029		89.029	14.512	1	774870			12265	4015	7947	7979	12457	12457					-0.032283074497058806
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7322082519531	2	482.732729	963.450904	-0.57699	-0.00027853	0.031818	1.5359E-05	-0.54517	-0.00026317	482.7325665992725	19.156	0.1635	19.156	19.05	19.214	0					8	3	3	0	0	0	0.13663	1	6018	6018		89.029	32.595	1	308380			12266	4015	7947	7979	12458	12458					-0.032283074497058806
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7324523925781	2	482.732729	963.450904	-2.9201	-0.0014096	2.1892	0.0010568	-0.7309	-0.00035283	482.7336595261738	19.018	0.23523	19.018	18.915	19.151	0					8	5	2	0	0	0	0.13663	1	5071	5071		89.029	28.911	1	142260			12267	4015	7947	7979	12459	12459					-0.032283074497058806
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7323913574219	2	482.732729	963.450904	2.3973	0.0011572	-3.7659	-0.0018179	-1.3686	-0.00066069	482.7306674085179	19.17	0.36374	19.17	19.014	19.378	0					12	7	2	0	0	0	0.13663	1	5886	5886		89.029	19.401	1	1030300			12268	4015	7947	7979	12460	12460					-0.032283074497058806
GEDIIHQL	8	Unmodified	_GEDIIHQL_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7422790527344	2	462.742899	923.471246	0.68131	0.00031527	-1.2481	-0.00057757	-0.56682	-0.00026229	462.7421333806077	37.92	0.22951	37.92	37.848	38.077	0					14	10	2	0	0	0	0.53424	1	14412	14412		56.721	5.3856	1	88862			12269	2902	7948	7980	12461	12461					0.006449080007655539
GEDKGIKAL	9	Unmodified	_GEDKGIKAL_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7660217285156	2	465.766374	929.518196	-0.57485	-0.00026775	-0.086427	-4.0255E-05	-0.66128	-0.000308	465.7663315077907	21.811	0.23734	21.811	21.719	21.957	0					11	5	3	0	0	0	0.098791	1	6399	6399		79.713	2.9384	1	553880			12270	4850	7949	7981	12462	12462					0.05061767551910634
GEDKTGIVY	9	Unmodified	_GEDKTGIVY_					0	0	0		ITGAV|p.K400T|1|0.12|ENSG00000138448|chr2:186646725-186646725|A/C|missense_variant	ITGAV|p.K400T|1|0.12|ENSG00000138448|chr2:186646725-186646725|A/C|missense_variant	ITGAV|p.K400T|1|0.12|ENSG00000138448|chr2:186646725-186646725|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.247802734375	2	491.248015	980.481476	0.58581	0.00028778	-1.0325	-0.00050721	-0.44667	-0.00021943	491.24741155686905	35.427	0.79937	35.427	35.028	35.828	0					55	22	5	0	0	0	0.071197	1	13716	13716		87.754	18.127	1	4193800			12271	11232	7950	7982	12463	12463					-0.009545290646656213
GEDKTGIVY	9	Unmodified	_GEDKTGIVY_					0	0	0		ITGAV|p.K400T|1|0.12|ENSG00000138448|chr2:186646725-186646725|A/C|missense_variant	ITGAV|p.K400T|1|0.12|ENSG00000138448|chr2:186646725-186646725|A/C|missense_variant	ITGAV|p.K400T|1|0.12|ENSG00000138448|chr2:186646725-186646725|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.24774169921875	2	491.248015	980.481476	2.6935	0.0013232	-2.701	-0.0013269	-0.0075317	-3.6999E-06	491.2464580885922	35.356	0.77338	35.356	34.947	35.721	0					35	15	4	0	0	0	0.034359	1	13632	13632		104.75	19.831	1	2627200			12272	11232	7950	7982	12464	12464					-0.009545290646656213
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.7859497070312	2	567.785492	1133.55643	1.1702	0.00066441	-0.75971	-0.00043135	0.41048	0.00023306	567.7849928391098	27.122	0.23508	27.122	27.037	27.273	0					28	9	4	0	0	0	0.14623	1	8306	8306		80.737	24.303	1	742090			12273	2602	7951	7983	12465	12465					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.7857666015625	2	567.785492	1133.55643	0.17244	9.791E-05	0.047535	2.699E-05	0.21998	0.0001249	567.7854507982447	27.415	0.42352	27.415	27.282	27.706	0					30	10	4	0	0	0	0.00078742	1	9560	9560		136.49	52.842	1	5156000			12274	2602	7951	7983	12466	12466					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.785888671875	2	567.785492	1133.55643	0.1189	6.7509E-05	0.70351	0.00039945	0.82241	0.00046695	567.7862433623038	27.138	0.17781	27.138	27.075	27.253	0					14	6	3	0	0	0	0.29048	1	8632	8632		63.694	21.356	1	165240			12275	2602	7951	7983	12467	12467					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.7861938476562	2	567.785492	1133.55643	-0.30348	-0.00017231	0.38748	0.00022001	0.084008	4.7698E-05	567.7857615914834	27.151	0.20662	27.151	27.065	27.272	0					11	7	2	0	0	0	0.39337	1	8614	8614		52.167	4.2076	1	136720			12276	2602	7951	7983	12468	12468					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.785400390625	2	567.785492	1133.55643	1.9479	0.001106	-1.2973	-0.00073662	0.65053	0.00036936	567.7847894953644	27.413	0.51335	27.413	27.055	27.569	0					23	10	4	0	0	0	7.5003E-05	1	9917	9917		147.3	56.702	1	1793900			12277	2602	7951	7983	12469	12469					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.7855834960938	2	567.785492	1133.55643	0.27743	0.00015752	0.20676	0.0001174	0.48419	0.00027491	567.7856135409421	27.397	0.26633	27.397	27.287	27.554	0					15	5	4	0	0	0	0.17498	1	9930	9930		77.288	32.266	1	920450			12278	2602	7951	7983	12470	12470					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A;VWA5A|p.D273Ifs*24|1|0.19|ENSG00000110002|chr11:124123014-124123014|A/-|frameshift_variant;VWA5A|p.G366Afs*38|1|0.21|ENSG00000110002|chr11:124123733-124123733|G/-|frameshift_variant;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.785400390625	2	567.785492	1133.55643	-1.2502	-0.00070984	2.1025	0.0011938	0.85229	0.00048392	567.7866114026759	27.205	0.25311	27.205	27.079	27.333	0					17	6	4	0	0	0	0.050009	1	8856	8856		105.17	3.7052	1	1026000			12279	2602	7951	7983	12471	12471					-0.005003913240898328
GEDLILHF	8	Unmodified	_GEDLILHF_					0	0	0		ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.P1206Lfs*12|1|0.08|ENSG00000197653|chr12:123819219-123819219|C/-|frameshift_variant;DNAH10|p.E1360*|1|0.18|ENSG00000197653|chr12:123830579-123830580|-/T|frameshift_variant;DNAH10|p.K1737Nfs*15|2|0.42|ENSG00000197653|chr12:123845799-123845799|A/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant;DNAH10|p.L299Nfs*4|1|0.07|ENSG00000197653|chr12:123784024-123784025|-/AA|frameshift_variant;DNAH10|p.P300Sfs*22|1|0.06|ENSG00000197653|chr12:123784026-123784027|-/CTCATCA|frameshift_variant;DNAH10|p.D498Tfs*15|1|0.18|ENSG00000197653|chr12:123789977-123789977|G/-|frameshift_variant;DNAH10|p.M516Wfs*4|1|0.11|ENSG00000197653|chr12:123790030-123790030|C/-|frameshift_variant	ENSG00000197653|ENST00000673944|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2463684082031	2	472.247818	942.481082	0.20649	9.7515E-05	-0.833	-0.00039338	-0.62651	-0.00029587	472.247326808063	38.007	0.19505	38.007	37.882	38.077	0					13	9	2	0	0	0	0.68754	1	14456	14456		35.201	0	1	122390			12280	7485	7952	7984	12472	12472					0.007540960061419355
GEDNGQRGYLL	11	Unmodified	_GEDNGQRGYLL_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.296630859375	2	611.296559	1220.57856	-0.77545	-0.00047403	0.98662	0.00060312	0.21117	0.00012909	611.2971982518103	34.863	0.35394	34.863	34.761	35.115	0					24	9	4	0	0	0	0.23242	1	13005	13005		70.399	2.9049	1	634350			12281	1089	7953	7985	12473	12473					-0.022901668556642107
GEDPDKRISI	10	Unmodified	_GEDPDKRISI_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.2938232421875	2	565.296027	1128.5775	-1.1196	-0.00063289	-0.11497	-6.4991E-05	-1.2345	-0.00069788	565.295624198505	26.729	0.31137	26.729	26.625	26.936	0					13	7	3	0	0	0	0.3029	1	8638	8638		66.92	3.3864	1	420190			12282	7383	7954	7986	12474	12474					0.01835618775430703
GEDPNKAEEL	10	Unmodified	_GEDPNKAEEL_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.2572631835938	2	551.256568	1100.49858	0.28861	0.0001591	1.1926	0.00065744	1.4812	0.00081654	551.2571510441788	24.377	0.15815	24.377	24.284	24.442	0					9	5	2	0	0	0	0.36647	1	7460	7460		59.931	15.814	1	108890			12283	6433	7955	7987	12475	12475					-0.04764653249526418
GEDRSPPTAL	10	Unmodified	_GEDRSPPTAL_					0	0	0		ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7620239257812	2	521.76182	1041.50909	1.7638	0.00092029	2.2769	0.001188	4.0407	0.0021083	521.763048166761	26.314	0.93954	26.314	25.738	26.677	0					42	17	4	0	0	0	0.46989	1	9353	9353		48.602	2.1448	1	906150			12284	1616	7956	7988	12476	12476					-0.010006258044313654
GEDRSPPTAL	10	Unmodified	_GEDRSPPTAL_					0	0	0		ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7620849609375	2	521.76182	1041.50909	3.393	0.0017703	1.8754	0.00097852	5.2684	0.0027488	521.7627429071449	26.227	0.72153	26.227	25.915	26.637	0					42	14	4	0	0	0	0.39647	1	9225	9225		56.632	3.2808	1	1353200			12285	1616	7956	7988	12477	12477					-0.010006258044313654
GEDRVVAAL	9	Unmodified	_GEDRVVAAL_					0	0	0		ENST00000556990.1_1_14:39736294-39748673:+|nuORF	ENST00000556990.1_1_14:39736294-39748673:+|nuORF	ENST00000556990.1_1_14:39736294-39748673:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2559814453125	2	465.256174	928.497795	-0.82761	-0.00038505	0.27417	0.00012756	-0.55344	-0.00025749	465.256255837632	23.94	0.20938	23.94	23.854	24.064	0					18	7	3	0	0	0	0.41354	1	7239	7239		40.573	5.3719	1	305470			12286	10669	7957	7989	12478	12478					0.03068596892092046
GEDSKQALQQL	11	Unmodified	_GEDSKQALQQL_					0	0	0		ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.8123168945312	2	608.812042	1215.60953	0.15597	9.4956E-05	0.21388	0.00013022	0.36985	0.00022517	608.8121331685549	30.436	0.13246	30.436	30.344	30.476	0					9	5	2	0	0	0	0.33569	1	9689	9689		58.63	0.39969	1	125780			12287	4546	7958	7990	12479	12479					0.010349864585805335
GEDSKQALQQL	11	Unmodified	_GEDSKQALQQL_					0	0	0		ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.8120727539062	2	608.812042	1215.60953	-0.64853	-0.00039483	0.99535	0.00060598	0.34682	0.00021115	608.8124595035425	30.7	0.28057	30.7	30.596	30.877	0					12	6	3	0	0	0	0.024591	1	11100	11100		117.71	13.692	1	685120			12288	4546	7958	7990	12480	12480					0.010349864585805335
GEDSKQALQQL	11	Unmodified	_GEDSKQALQQL_					0	0	0		ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	608.8118286132812	2	608.812042	1215.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.493	1	30.493	29.993	30.993	0								0	0	0	0.10345	1	10022	10022		75.652	13.888	1				12289	4546	7958	7990	12481	12481					0.010349864585805335
GEDSKQALQQL	11	Unmodified	_GEDSKQALQQL_					0	0	0		ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.8119506835938	2	608.812042	1215.60953	0.52687	0.00032077	-0.064015	-3.8973E-05	0.46286	0.00028179	608.8119686725579	30.716	0.19757	30.716	30.617	30.815	0					9	4	3	0	0	0	0.093595	1	11501	11501		91.265	16.222	1	140330			12290	4546	7958	7990	12482	12482					0.010349864585805335
GEDSKQALQQL	11	Unmodified	_GEDSKQALQQL_					0	0	0		ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	608.811279296875	2	608.812042	1215.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.481	1	30.481	29.981	30.981	0								0	0	0	0.045406	1	10385	10385		90.149	18.271	1				12291	4546	7958	7990	12483	12483					0.010349864585805335
GEDTGRVHL	9	Unmodified	_GEDTGRVHL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;LRBA-SH3D19|2|fusion;LRBA-SH3D19|3|fusion	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2487487792969	2	492.24888	982.483208	-0.73764	-0.0003631	0.43369	0.00021348	-0.30396	-0.00014962	492.24906883823826	22.785	0.21638	22.785	22.728	22.944	0					9	4	3	0	0	0	0.10915	1	7773	7773		77.318	34.921	1	341420			12292	2585	7959	7991	12484	12484					-0.008734752560371817
GEDTGRVHL	9	Unmodified	_GEDTGRVHL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;LRBA-SH3D19|2|fusion;LRBA-SH3D19|3|fusion	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2485656738281	2	492.24888	982.483208	-2.6559	-0.0013074	2.5721	0.0012661	-0.083807	-4.1254E-05	492.2498926762226	22.69	0.18872	22.69	22.592	22.781	0					6	4	2	0	0	0	0.36892	1	6809	6809		44.377	10.205	1	181070			12293	2585	7959	7991	12485	12485					-0.008734752560371817
GEDWNAVMY	9	Unmodified	_GEDWNAVMY_					0	0	0		CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;CACNA1D|p.D713V|1|0.08|ENSG00000157388|chr3:53726916-53726916|A/T|missense_variant;CACNA1D|p.A841Dfs*10|1|0.73|ENSG00000157388|chr3:53732862-53732865|GCCG/-|frameshift_variant;CACNA1D|p.F1318Sfs*6|1|0.39|ENSG00000157388|chr3:53770457-53770457|T/-|frameshift_variant;nc|ENSG00000157388|Q01668-4|CACNA1D;CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant	CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.724609375	2	542.723849	1083.43315	1.1383	0.00061778	-0.40194	-0.00021814	0.73635	0.00039964	542.723613695653	33.202	0.18996	33.202	33.104	33.294	0					13	8	2	0	0	0	0.50461	1	10778	10778		31.955	0	1	85666			12294	347	7960	7992	12486	12486					-0.10523345976207565
GEEARRYQ	8	Unmodified	_GEEARRYQ_					0	0	0		RIMS1|p.R824*|1|0.13|ENSG00000079841|chr6:72251013-72251014|-/T|frameshift_variant;nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1	RIMS1|p.R824*|1|0.13|ENSG00000079841|chr6:72251013-72251014|-/T|frameshift_variant	RIMS1|p.R824*|1|0.13|ENSG00000079841|chr6:72251013-72251014|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7463684082031	2	504.746505	1007.47846	0.11606	5.858E-05	-0.30683	-0.00015487	-0.19077	-9.6293E-05	504.7465453369941	30.294	0.22348	30.294	30.218	30.442	0					8	5	2	0	0	0	0.5676	1	10291	10291		53.351	0	1	97519			12295	1631	7961	7993	12487	12487					-0.024983593988054054
GEEDLKVTKN	10	Unmodified	_GEEDLKVTKN_					0	0	0			REV__tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1	REV__tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.2978515625	2	566.79586	1131.57717	1.1908	0.00067493	-0.93275	-0.00052868	0.25802	0.00014625	566.7953654992265	16.199	0.17272	16.199	16.12	16.292	0					11	8	2	0	0	0	0.46128	1	3664	3664		49.536	1.5765	1	59645	+		12296	22136	7962	7994	12488	12488					0.016641990555854136
GEEEATVMVIV	11	Unmodified	_GEEEATVMVIV_					0	0	0			REV__PTPN14|p.A1006V|1|0.39|ENSG00000152104|chr1:214372730-214372730|G/A|missense_variant	REV__PTPN14|p.A1006V|1|0.39|ENSG00000152104|chr1:214372730-214372730|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.7943725585938	2	588.794472	1175.57439	0.16675	9.8179E-05	-0.044838	-2.64E-05	0.12191	7.1779E-05	588.7945725815084	41.535	0.52388	41.535	41.383	41.907	0					88	25	6	0	0	0	0.7098	1	15857	15857		26.693	2.1737	1	6105700	+		12297	21426	7963	7995	12489	12489					-0.006373923936052961
GEEEGRATV	9	Unmodified	_GEEEGRATV_					0	0	0		nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	nc|ENSG00000115866|P14868-2|DARS1	nc|ENSG00000115866|P14868-2|DARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.22540283203125	2	474.225071	946.435589	-0.46281	-0.00021948	0.55012	0.00026088	0.087306	4.1403E-05	474.22531697472084	18.307	0.11092	18.307	18.235	18.346	0					8	3	3	0	0	0	0.21419	1	4744	4744		59.931	8.5953	1	139310			12298	2943	7964	7996	12490	12490					-0.039771742468929006
GEEEGRATV	9	Unmodified	_GEEEGRATV_					0	0	0		nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	nc|ENSG00000115866|P14868-2|DARS1	nc|ENSG00000115866|P14868-2|DARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.22491455078125	2	474.225071	946.435589	0.69033	0.00032737	-1.1439	-0.00054245	-0.45355	-0.00021508	474.2245883980502	18.463	0.21889	18.463	18.353	18.572	0					7	4	2	0	0	0	0.076532	1	5544	5544		85.862	24.89	1	1538200			12299	2943	7964	7996	12491	12491					-0.039771742468929006
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.76171875	2	524.761486	1047.50842	0.69932	0.00036698	0.049896	2.6183E-05	0.74922	0.00039316	524.7615252256284	30.289	0.18266	30.289	30.217	30.4	0					10	6	2	0	0	0	0.34979	1	9627	9627		61.765	13.805	1	183710			12300	1386	7965	7997	12492	12492					-0.013434652441219441
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7613525390625	2	524.761486	1047.50842	0.09381	4.9228E-05	0.21457	0.0001126	0.30838	0.00016183	524.7615561110274	30.562	0.27062	30.562	30.432	30.703	0					10	6	2	0	0	0	0.023179	1	11037	11037		122.94	43.227	1	839340			12301	1386	7965	7997	12493	12493					-0.013434652441219441
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7615966796875	2	524.761486	1047.50842	0.41885	0.0002198	-0.17231	-9.0422E-05	0.24654	0.00012937	524.7614361940698	30.338	0.17936	30.338	30.236	30.415	0					8	5	2	0	0	0	0.46192	1	9943	9943		49.466	3.009	1	180300			12302	1386	7965	7997	12494	12494					-0.013434652441219441
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7616577148438	2	524.761486	1047.50842	0.11026	5.7863E-05	0.43413	0.00022782	0.5444	0.00028568	524.7616464912406	30.583	0.29043	30.583	30.479	30.77	0					13	6	3	0	0	0	0.011557	1	11435	11435		136.99	51.828	1	797860			12303	1386	7965	7997	12495	12495					-0.013434652441219441
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7619018554688	2	524.761486	1047.50842	3.4364	0.0018033	-3.0045	-0.0015767	0.43188	0.00022663	524.759982238138	30.513	0.205	30.513	30.458	30.663	0					9	4	3	0	0	0	0.21577	1	11315	11315		77.533	21.099	1	575160			12304	1386	7965	7997	12496	12496					-0.013434652441219441
GEEGYKPF	8	Unmodified	_GEEGYKPF_					0	0	0		IL4R|p.E684Kfs*3|1|0.54|ENSG00000077238|chr16:27363398-27363398|G/-|frameshift_variant;nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	IL4R|p.E684Kfs*3|1|0.54|ENSG00000077238|chr16:27363398-27363398|G/-|frameshift_variant	IL4R|p.E684Kfs*3|1|0.54|ENSG00000077238|chr16:27363398-27363398|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7170104980469	2	463.71635	925.418148	0.098629	4.5736E-05	0.37254	0.00017275	0.47117	0.00021849	463.71649761314364	38.419	0.1628	38.419	38.357	38.52	0					16	9	2	0	0	0	0.7126	1	12522	12522		31.955	0	1	45764			12305	1578	7966	7998	12497	12497					-0.04754469781892112
GEEISTLKLHA	11	Unmodified	_GEEISTLKLHA_					0	0	0			REV__ENSG00000164675|ENST00000324698|IQUB	REV__ENSG00000164675|ENST00000324698|IQUB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	599.3292236328125	2	599.327328	1196.6401	3.1419	0.001883	0.61526	0.00036874	3.7571	0.0022517	599.3275199219304	41.453	1.409	41.453	40.469	41.878	0					87	32	4	0	0	0	0.62108	1	16487	16487		35.152	2.4015	1	438280	+		12306	15999	7967	7999	12498	12498					0.04964764843634839
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.265625	2	473.266207	944.517862	-0.022311	-1.0559E-05	-0.90325	-0.00042748	-0.92556	-0.00043804	473.2655291707472	33.862	0.1769	33.862	33.808	33.985	0					10	7	2	0	0	0	0.095583	1	11055	11055		80.455	8.5771	1	91131			12307	3661	7968	8000	12499	12499					0.04338347832049294
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.26580810546875	2	473.266207	944.517862	0.24854	0.00011763	-1.2498	-0.00059151	-1.0013	-0.00047388	473.26556938923306	34.18	0.20052	34.18	34.067	34.268	0					14	5	3	0	0	0	0.020674	1	12704	12704		120.87	5.3744	1	550990			12308	3661	7968	8000	12500	12500					0.04338347832049294
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.265625	2	473.266207	944.517862	-0.53615	-0.00025374	-0.24278	-0.0001149	-0.77893	-0.00036864	473.2659316410596	34.165	0.27397	34.165	34.06	34.334	0					10	7	2	0	0	0	0.020674	1	12714	12714		120.87	10.749	1	280750			12309	3661	7968	8000	12501	12501					0.04338347832049294
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.26568603515625	2	473.266207	944.517862	-1.5422	-0.00072985	1.176	0.00055656	-0.36616	-0.00017329	473.26663629414475	33.943	0.20272	33.943	33.864	34.067	0					21	8	3	0	0	0	0.10506	1	11417	11417		78.264	8.6362	1	410300			12310	3661	7968	8000	12502	12502					0.04338347832049294
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.265869140625	2	473.266207	944.517862	0.59798	0.000283	-1.0073	-0.0004767	-0.40927	-0.00019369	473.26565572586065	34.14	0.22999	34.14	34.044	34.274	0					17	5	4	0	0	0	0.02953	1	13140	13140		109.48	8.2257	1	2145200			12311	3661	7968	8000	12503	12503					0.04338347832049294
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2657775878906	2	473.266207	944.517862	-0.50129	-0.00023725	-0.37207	-0.00017609	-0.87337	-0.00041334	473.26601922396884	33.932	0.2324	33.932	33.807	34.039	0					13	6	3	0	0	0	0.13726	1	11955	11955		70.816	1.1886	1	286210			12312	3661	7968	8000	12504	12504					0.04338347832049294
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2656555175781	2	473.266207	944.517862	-2.5134	-0.0011895	2.2302	0.0010555	-0.2832	-0.00013403	473.2670064850836	33.927	0.23067	33.927	33.834	34.065	0					15	6	3	0	0	0	0.026538	1	11951	11951		112.41	13.782	1	246650			12313	3661	7968	8000	12505	12505					0.04338347832049294
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2658386230469	2	473.266207	944.517862	0.65614	0.00031053	-1.3469	-0.00063746	-0.69079	-0.00032693	473.265451329387	34.094	0.20713	34.094	33.989	34.196	0					14	4	4	0	0	0	0.04067	1	13040	13040		98.582	10.886	1	1813700			12314	3661	7968	8000	12506	12506					0.04338347832049294
GEENGAHTI	9	Unmodified	_GEENGAHTI_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2117919921875	2	464.211963	926.409374	0.58037	0.00026941	-1.3218	-0.0006136	-0.74145	-0.00034419	464.21144983068257	19.046	0.173	19.046	18.965	19.138	0					9	4	3	0	0	0	0.28897	1	5709	5709		51.193	5.2407	1	571100			12315	6672	7969	8001	12507	12507					-0.056774434183580524
GEENGAHTI	9	Unmodified	_GEENGAHTI_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.21160888671875	2	464.211963	926.409374	-0.48251	-0.00022399	-0.11333	-5.2609E-05	-0.59584	-0.0002766	464.21192757337326	18.954	0.16749	18.954	18.846	19.014	0					5	3	2	0	0	0	0.070005	1	5787	5787		88.177	42.225	1	280000			12316	6672	7969	8001	12508	12508					-0.056774434183580524
GEENNKVL	8	Unmodified	_GEENNKVL_					0	0	0			REV__nc|ENSG00000163873|Q13003-2|GRIK3	REV__nc|ENSG00000163873|Q13003-2|GRIK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7325439453125	2	451.732532	901.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.443	1	15.443	14.943	15.943	0								0	0	0	1.7419	1	3466	3466		45.952	3.5558	1		+		12317	15928	7970	8002	12509	12509					-0.0041568237888895965
GEEQNKEAL	9	Unmodified	_GEEQNKEAL_					0	0	0		nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE;ENST00000435487.1_1_7:56635601-56635700:-|nuORF	nc|ENSG00000108953|P62258-2|YWHAE	nc|ENSG00000108953|P62258-2|YWHAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.24603271484375	2	509.246003	1016.47745	-0.018115	-9.225E-06	-0.049468	-2.5191E-05	-0.067583	-3.4416E-05	509.24593373112225	19.516	0.23074	19.516	19.43	19.661	0					11	5	3	0	0	0	0.076532	1	5910	5910		85.862	16.234	1	733090			12318	2558	7971	8003	12510	12510					-0.030126185583753795
GEEQNRVQL	9	Unmodified	_GEEQNRVQL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7731323242188	2	536.772719	1071.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.234	1	26.234	25.734	26.734	0								0	0	0	0.095784	1	9365	9365		72.879	26.907	1				12319	1023	7972	8004	12511	12511					-0.002018210558617284
GEERATAISL	10	Unmodified	_GEERATAISL_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.77783203125	2	523.77747	1045.54039	-1.2774	-0.00066908	2.0374	0.0010672	0.76003	0.00039809	523.7786595586958	32.414	0.27541	32.414	32.303	32.579	0					15	8	2	0	0	0	0.2978	1	11263	11263		67.494	1.0644	1	260660			12320	22500	7973	8005	12512	12512					0.019439472296653548
GEERTGQVL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GEERTGQVL_					1	0	0			REV__ANXA10|p.M156V|1|0.12|ENSG00000109511|chr4:168165312-168165312|A/G|missense_variant	REV__ANXA10|p.M156V|1|0.12|ENSG00000109511|chr4:168165312-168165312|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7617797851562	2	515.76182	1029.50909	1.5122	0.00077992	-1.0221	-0.00052714	0.4901	0.00025277	515.76125313228	38.44	0.39413	38.44	38.3	38.695	0					20	8	3	0	0	0	0.028876	1	15104	15104		110.12	22.423	1	940310	+		12321	12169	7974	8006	12513	12513					-0.004486258043925773
GEESVAKAIFI	11	Unmodified	_GEESVAKAIFI_					0	0	0			REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.3200073242188	2	582.318971	1162.62339	-0.32265	-0.00018789	1.1987	0.00069804	0.87607	0.00051015	582.3195616696627	28.215	0.16249	28.215	28.112	28.275	0					8	3	3	0	0	0	0.27635	1	10299	10299		75.043	14.925	1	259600	+		12322	12821	7975	8007	12514	12514					0.04858263957657982
GEESYDLKD	9	Unmodified	_GEESYDLKD_					0	0	0		SERPINB3|p.V289G|1|0.69|ENSG00000057149|chr18:63655964-63655964|A/C|missense_variant	SERPINB3|p.V289G|1|0.69|ENSG00000057149|chr18:63655964-63655964|A/C|missense_variant	SERPINB3|p.V289G|1|0.69|ENSG00000057149|chr18:63655964-63655964|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2291870117188	2	528.230019	1054.44548	0.69233	0.00036571	-2.6774	-0.0014143	-1.9851	-0.0010486	528.2287917386475	14.367	0.16666	14.367	14.308	14.474	0					5	3	2	0	0	0	0.33044	1	3568	3568		47.657	6.8792	1	278860			12323	22385	7976	8008	12515	12515					-0.07956031032176725
GEEVAMRKL	9	Unmodified	_GEEVAMRKL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7789306640625	2	516.778959	1031.54336	3.2968	0.0017037	-3.5734	-0.0018467	-0.27666	-0.00014297	516.7770540377898	24.796	0.25484	24.796	24.691	24.946	0					8	5	2	0	0	0	0.11898	1	8614	8614		75.043	9.2401	1	1195500			12324	5385	7977	8009	12516	12516					0.02885499082822207
GEEVRTVY	8	Unmodified	_GEEVRTVY_					0	0	0			REV__ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant	REV__ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.73974609375	2	476.740357	951.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.043	1	30.043	29.543	30.543	0								0	0	0	1.7419	1	10793	10793		47.916	0	1		+		12325	12218	7978	8010	12517	12517					-0.011513958618593279
GEEVVRVL	8	Unmodified	_GEEVVRVL_					0	0	0		ENSG00000100726|ENST00000262319|TELO2;TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.75994873046875	2	450.761092	899.507631	-0.16319	-7.3562E-05	-0.81142	-0.00036576	-0.97462	-0.00043932	450.76033950625674	34.161	0.11411	34.161	34.095	34.209	0					6	3	2	0	0	0	0.37144	1	12062	12062		74.255	10.949	1	32959			12326	2060	7979	8011	12518	12518					0.05385784897487156
GEEWKGYVV	9	Unmodified	_GEEWKGYVV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000497406.2_1_12:59414000-59414099:+|nuORF;ENST00000397390.3_1_9:19200870-19200993:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7637329101562	2	533.763832	1065.51311	1.8125	0.00096742	-0.90438	-0.00048273	0.90808	0.0004847	533.7628733193376	39.305	0.41645	39.305	39.11	39.526	0					24	9	4	0	0	0	0.38666	1	15527	15527		42.864	4.0581	1	297910			12327	4145	7980	8012	12519	12519					-0.017025363107222802
GEFEKKYVA	9	Unmodified	_GEFEKKYVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.7802734375	2	535.779482	1069.54441	0.6345	0.00033995	0.5688	0.00030475	1.2033	0.0006447	535.7798625002484	23	0.20773	23	22.938	23.146	0					15	7	3	0	0	0	0.10915	1	6580	6580		77.318	8.5308	1	356240			12328	3778	7981	8013	12520	12520					0.0124203672337444
GEFEKKYVA	9	Unmodified	_GEFEKKYVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7796630859375	2	535.779482	1069.54441	0.18775	0.00010059	0.35145	0.0001883	0.53919	0.00028889	535.7799941269888	23.302	0.23487	23.302	23.21	23.444	0					14	5	3	0	0	0	0.035062	1	7706	7706		104.06	19.141	1	1353500			12329	3778	7981	8013	12521	12521					0.0124203672337444
GEFEKKYVA	9	Unmodified	_GEFEKKYVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.2819213867188	2	535.779482	1069.54441	-0.5421	-0.00029045	1.2748	0.00068302	0.73272	0.00039257	535.7801098317743	23.068	0.28126	23.068	22.971	23.252	0					25	9	4	0	0	0	0.056004	1	6860	6860		93.143	26.714	1	977470			12330	3778	7981	8013	12522	12522					0.0124203672337444
GEFEKKYVA	9	Unmodified	_GEFEKKYVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7797241210938	2	535.779482	1069.54441	1.0696	0.00057306	-0.18844	-0.00010096	0.88114	0.0004721	535.7794179703367	23.085	0.2748	23.085	22.992	23.267	0					14	6	3	0	0	0	0.098791	1	6976	6976		79.713	29.688	1	479290			12331	3778	7981	8013	12523	12523					0.0124203672337444
GEFEKKYVA	9	Unmodified	_GEFEKKYVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7800903320312	2	535.779482	1069.54441	1.9026	0.0010194	-0.77614	-0.00041584	1.1265	0.00060354	535.7790147612053	23.226	0.41876	23.226	23.117	23.535	0					19	8	3	0	0	0	0.019882	1	7856	7856		122.18	47.921	1	5353800			12332	3778	7981	8013	12524	12524					0.0124203672337444
GEFEKKYVAT	10	Unmodified	_GEFEKKYVAT_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.3037719726562	2	586.303321	1170.59209	0.090261	5.292E-05	0.62193	0.00036464	0.71219	0.00041756	586.3035890965542	23.871	0.23838	23.871	23.768	24.006	0					12	5	3	0	0	0	0.36647	1	7970	7970		59.931	18.851	1	576950			12333	3778	7982	8014	12525	12525					0.013616909235679486
GEFEKKYVAT	10	Unmodified	_GEFEKKYVAT_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.303955078125	2	586.303321	1170.59209	-1.7365	-0.0010181	2.9905	0.0017533	1.2539	0.00073518	586.3052668567623	23.657	0.124	23.657	23.589	23.713	0					5	3	2	0	0	0	0.59255	1	7257	7257		35.178	11.8	1	89264			12334	3778	7982	8014	12526	12526					0.013616909235679486
GEFEKKYVAT	10	Unmodified	_GEFEKKYVAT_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.303955078125	2	586.303321	1170.59209	3.2029	0.0018779	-1.1948	-0.00070049	2.0082	0.0011774	586.3027406457836	23.804	0.21399	23.804	23.7	23.914	0					10	4	3	0	0	0	0.36647	1	8138	8138		59.931	27.118	1	676590			12335	3778	7982	8014	12527	12527					0.013616909235679486
GEFEKKYVATL	11	Unmodified	_GEFEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	642.8451538085938	2	642.845353	1283.67615	0.59169	0.00038036	-0.5144	-0.00033068	0.077291	4.9686E-05	642.8448209982149	32.823	0.32002	32.823	32.737	33.057	0					16	8	3	0	0	0	0.34891	1	12092	12092		57.149	19.337	1	216380			12336	3778	7983	8015	12528	12528					0.045662220204803816
GEFEKKYVATL	11	Unmodified	_GEFEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	642.8458862304688	2	642.845353	1283.67615	-0.50769	-0.00032637	1.0149	0.00065245	0.50724	0.00032608	642.8462843332766	32.825	0.17351	32.825	32.743	32.917	0					12	4	3	0	0	0	0.49446	1	12498	12498		44.639	9.4387	1	219570			12337	3778	7983	8015	12529	12529					0.045662220204803816
GEFGVRGRGTK	11	Unmodified	_GEFGVRGRGTK_					0	0	0			REV__ENST00000316341.7_1_16:67978295-67978643:-|nuORF	REV__ENST00000316341.7_1_16:67978295-67978643:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.5486145019531	3	388.547511	1162.6207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.281	1	28.281	27.781	28.781	0								0	0	0	0.45344	1	10344	10344		25.126	0.89417	1		+		12338	18305	7984	8016	12530	12530					0.04589853343372852
GEFKNGNF	8	Unmodified	_GEFKNGNF_					0	0	0		ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.71368408203125	2	456.714142	911.413731	0.079145	3.6147E-05	-0.15202	-6.9427E-05	-0.07287	-3.3281E-05	456.7140705507756	28.983	0.63428	28.983	28.651	29.285	0					36	16	3	0	0	0	0.72381	1	9817	9817		30.504	1.3541	1	172100			12339	6875	7985	8017	12531	12531					-0.04551934204812369
GEFKQTSSF	9	Unmodified	_GEFKQTSSF_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7459716796875	2	515.745639	1029.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.269	1	28.269	27.769	28.769	0								0	0	0	0.12601	1	9971	9971		65.465	21.839	1				12340	5282	7986	8018	12532	12532					-0.036834132074318404
GEFKQTSSF	9	Unmodified	_GEFKQTSSF_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7461547851562	2	515.745639	1029.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.024	1	28.024	27.524	28.524	0								0	0	0	0.36056	1	8993	8993		22.58	0.61977	1				12341	5282	7986	8018	12533	12533					-0.036834132074318404
GEFKVEAR	8	Unmodified	_GEFKVEAR_					0	0	0			REV__CON__Q9U6Y5	REV__CON__Q9U6Y5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2523193359375	2	468.250892	934.48723	2.6218	0.0012276	0.53143	0.00024884	3.1532	0.0014765	468.2511792123612	29.085	0.31547	29.085	28.975	29.291	0					9	6	2	0	0	0	0.28444	1	10622	10622		87.696	2.7809	1	2739700	+	+	12342	12622	7987	8019	12534	12534					0.017366142376545213
GEFSITYKP	9	Unmodified	_GEFSITYKP_					0	0	0		ENST00000586096.3_1_19:1440314-1440458:+|nuORF;ENST00000522454.1_1_5:164028010-164028223:-|nuORF;ENSG00000115268|ENST00000592588|RPS15	ENST00000586096.3_1_19:1440314-1440458:+|nuORF	ENST00000586096.3_1_19:1440314-1440458:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2670288085938	2	521.266207	1040.51786	3.3852	0.0017646	-1.534	-0.00079963	1.8512	0.00096499	521.2656218770832	37.738	0.72787	37.738	37.383	38.111	0					28	15	3	0	0	0	0.38666	1	14743	14743		42.864	0.46813	1	787280			12343	2895	7988	8020	12535	12535					-0.0007765216796542518
GEFSVLES	8	Unmodified	_GEFSVLES_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.2086181640625	2	434.208358	866.402163	0.83877	0.0003642	0.22856	9.9241E-05	1.0673	0.00046344	434.2084321703806	30.385	0.40285	30.385	30.277	30.68	0					14	8	2	0	0	0	0.70055	1	11254	11254		33.516	0.022601	1	372550			12344	4172	7989	8021	12536	12536					-0.036381760187964574
GEGDGRTAL	9	Unmodified	_GEGDGRTAL_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.21435546875	2	438.214506	874.414459	0.68444	0.00029993	-1.0903	-0.00047778	-0.40584	-0.00017785	438.21400490931995	20.634	0.26515	20.634	20.528	20.793	0					9	5	2	0	0	0	0.095583	1	6598	6598		80.455	6.1996	1	749160			12345	5240	7990	8022	12537	12537					-0.027771395557579126
GEGDPRPEL	9	Unmodified	_GEGDPRPEL_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2366943359375	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.994	1	26.994	26.494	27.494	0								0	0	0	0.20989	1	8271	8271		49.536	8.7579	1				12346	2616	7991	8023	12538	12538					-0.029165838672270183
GEGDPRPEL	9	Unmodified	_GEGDPRPEL_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2358093261719	2	485.235439	968.456324	0.65422	0.00031745	2.5835	0.0012536	3.2377	0.001571	485.2367943585873	27.212	0.96743	27.212	27.048	28.015	0					36	23	2	0	0	0	0.22837	1	9474	9474		58.23	8.7884	1	393950			12347	2616	7991	8023	12539	12539					-0.029165838672270183
GEGDPRPEL	9	Unmodified	_GEGDPRPEL_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2359619140625	2	485.235439	968.456324	-1.2359	-0.0005997	1.9871	0.00096422	0.75122	0.00036452	485.2363599354306	26.977	0.29963	26.977	26.839	27.139	0					14	10	2	0	0	0	0.12834	1	8534	8534		72.879	19.79	1	82309			12348	2616	7991	8023	12540	12540					-0.029165838672270183
GEGDTVRCF	9	Carbamidomethyl (C)	_GEGDTVRC(Carbamidomethyl (C))F_	GEGDTVRC(1)F		GEGDTVRC(55)F		0	1	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7273559570312	2	520.726923	1039.43929	0.28656	0.00014922	0.34482	0.00017956	0.63138	0.00032878	520.7270688340611	28.037	0.16628	28.037	27.96	28.126	0					9	6	2	0	0	0	0.25761	1	9000	9000		54.722	13.944	1	107600			12349	2144	7992	8024	12541	12541	82				-0.07884827744692302
GEGEGRVGIIL	11	Unmodified	_GEGEGRVGIIL_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3095703125	2	550.308938	1098.60332	0.54873	0.00030197	-1.8972	-0.0010441	-1.3485	-0.00074208	550.3064350202864	40.076	0.40115	40.076	39.98	40.381	0					26	16	3	0	0	0	0.21704	1	15264	15264		72.243	15.809	1	283790			12350	500	7993	8025	12542	12542					0.05796513017730831
GEGEGRVGIIL	11	Unmodified	_GEGEGRVGIIL_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3093872070312	2	550.308938	1098.60332	0.18581	0.00010226	0.24041	0.0001323	0.42623	0.00023456	550.3090573154869	40.045	0.22166	40.045	39.946	40.168	0					15	7	3	0	0	0	0.54316	1	15762	15762		41.08	1.0219	1	174750			12351	500	7993	8025	12543	12543					0.05796513017730831
GEGEGRVGIIL	11	Unmodified	_GEGEGRVGIIL_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.308837890625	2	550.308938	1098.60332	3.7449	0.0020609	-2.127	-0.0011705	1.6179	0.00089033	550.3067566916636	39.99	0.24067	39.99	39.852	40.092	0					12	5	3	0	0	0	0.3077	1	15836	15836		61.765	17.648	1	343290			12352	500	7993	8025	12544	12544					0.05796513017730831
GEGELLVHY	9	Unmodified	_GEGELLVHY_					0	0	0			REV__TRIM29|p.T395I|1|0.82|ENSG00000137699|chr11:120125840-120125840|G/A|missense_variant	REV__TRIM29|p.T395I|1|0.82|ENSG00000137699|chr11:120125840-120125840|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7563171386719	2	508.756007	1015.49746	-0.54922	-0.00027942	0.35114	0.00017864	-0.19808	-0.00010078	508.75616399720917	34.875	0.3026	34.875	34.785	35.087	0					24	13	2	0	0	0	0.32741	1	11757	11757		47.916	10.756	1	604270	+		12353	14930	7994	8026	12545	12545					-0.00966822827751912
GEGESSKPRQ	10	Unmodified	_GEGESSKPRQ_					0	0	0		ENST00000257860.8_1_12:49688081-49688252:+|nuORF	ENST00000257860.8_1_12:49688081-49688252:+|nuORF	ENST00000257860.8_1_12:49688081-49688252:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.76513671875	2	537.762352	1073.51015	0.29539	0.00015885	4.365	0.0023473	4.6604	0.0025062	537.7646857223082	20.255	0.11833	20.255	20.195	20.314	0					4	2	2	0	0	0	0.31613	1	6548	6548		65.465	5.3471	1	96989			12354	8271	7995	8027	12546	12546					-0.023664114355142374
GEGETKFNKL	10	Unmodified	_GEGETKFNKL_					0	0	0		TRMT61B|p.K169N|1|0.36|ENSG00000171103|chr2:28869771-28869771|C/A|missense_variant	TRMT61B|p.K169N|1|0.36|ENSG00000171103|chr2:28869771-28869771|C/A|missense_variant	TRMT61B|p.K169N|1|0.36|ENSG00000171103|chr2:28869771-28869771|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.79443359375	2	561.793121	1121.57169	1.2734	0.00071539	-0.62965	-0.00035373	0.64377	0.00036166	561.7927490141859	28.404	0.49538	28.404	28.082	28.577	0					35	17	4	0	0	0	0.67098	1	8765	8765		25.574	2.0514	1	841460			12355	23067	7996	8028	12547	12547					0.0157652026375672
GEGGAEPVESL	11	Unmodified	_GEGGAEPVESL_					0	0	0			REV__nc|ENSG00000184730|Q0VD83-2|APOBR	REV__nc|ENSG00000184730|Q0VD83-2|APOBR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.747314453125	2	522.745836	1043.47712	-0.051617	-2.6983E-05	2.9338	0.0015336	2.8821	0.0015066	522.747504736185	17.242	0.20568	17.242	17.183	17.388	0					6	4	2	0	0	0	0.67178	1	5098	5098		30.318	0.47618	1	332600	+		12356	12187	7997	8029	12548	12548					-0.04288038278218664
GEGGLKLIKG	10	Unmodified	_GEGGLKLIKG_					0	0	0			REV__ENST00000437621.6_1_7:1609854-1614397:+|nuORF	REV__ENST00000437621.6_1_7:1609854-1614397:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.297607421875	2	486.297842	970.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.562	1	21.562	21.062	22.062	0								0	0	0	0.23331	1	6273	6273		60.118	5.0344	1		+		12357	19217	7998	8030	12549	12549					0.09466333339958055
GEGGWRWSC	9	Carbamidomethyl (C)	_GEGGWRWSC(Carbamidomethyl (C))_	GEGGWRWSC(1)		GEGGWRWSC(44)		0	1	0			REV__ENST00000261778.1_1_16:69117891-69118167:+|nuORF	REV__ENST00000261778.1_1_16:69117891-69118167:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.72900390625	2	547.727258	1093.43996	1.8097	0.00099125	0.89678	0.00049119	2.7065	0.0014824	547.7277703359342	20.372	1.0205	20.372	19.609	20.629	0					39	20	4	0	0	0	0.37197	1	6484	6484		44.117	9.9443	1	4167700	+		12358	18021	7999	8031	12550	12550	634				-0.10301988304991028
GEGHFGKVEL	10	Unmodified	_GEGHFGKVEL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7755737304688	2	536.774731	1071.53491	1.3435	0.00072117	0.058477	3.1389E-05	1.402	0.00075256	536.7747347128584	29.709	0.13978	29.709	29.645	29.785	0					12	6	2	0	0	0	0.4287	1	9394	9394		53.089	13.836	1	57241			12359	5463	8000	8032	12551	12551					0.00200268437856721
GEGHFGKVEL	10	Unmodified	_GEGHFGKVEL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7750244140625	2	536.774731	1071.53491	2.1287	0.0011426	-1.2259	-0.00065805	0.90279	0.00048459	536.7739671790588	29.975	0.40498	29.975	29.812	30.217	0					20	10	3	0	0	0	0.12383	1	10753	10753		91.265	19.97	1	620860			12360	5463	8000	8032	12552	12552					0.00200268437856721
GEGHFGKVEL	10	Unmodified	_GEGHFGKVEL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7756958007812	2	536.774731	1071.53491	2.1897	0.0011754	-0.57469	-0.00030848	1.615	0.00086689	536.774585628361	29.747	0.15208	29.747	29.706	29.858	0					6	4	2	0	0	0	0.27065	1	10055	10055		70.816	14.382	1	38013			12361	5463	8000	8032	12553	12553					0.00200268437856721
GEGHFGKVEL	10	Unmodified	_GEGHFGKVEL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.77587890625	2	536.774731	1071.53491	0.69985	0.00037566	0.47814	0.00025665	1.178	0.00063231	536.7750510966976	29.905	0.41609	29.905	29.798	30.214	0					15	8	3	0	0	0	0.24329	1	10998	10998		74.165	2.2875	1	768030			12362	5463	8000	8032	12554	12554					0.00200268437856721
GEGHFGKVEL	10	Unmodified	_GEGHFGKVEL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.775146484375	2	536.774731	1071.53491	1.952	0.0010478	-1.4655	-0.00078667	0.48649	0.00026114	536.7739093519466	29.912	0.31665	29.912	29.731	30.048	0					12	6	3	0	0	0	0.22691	1	11014	11014		76.17	26.728	1	507900			12363	5463	8000	8032	12555	12555					0.00200268437856721
GEGKISKDL	9	Unmodified	_GEGKISKDL_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7633056640625	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.413	1	20.413	19.913	20.913	0								0	0	0	0.16368	1	6611	6611		56.632	8.6727	1				12364	766	8001	8033	12556	12556					0.03817463689279066
GEGKISKDL	9	Unmodified	_GEGKISKDL_					0	0	0		DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7635803222656	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.427	1	20.427	19.927	20.927	0								0	0	0	0.14211	1	6486	6486		61.691	3.4614	1				12365	766	8001	8033	12557	12557					0.03817463689279066
GEGKLFSL	8	Unmodified	_GEGKLFSL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.73724365234375	2	425.737086	849.459619	0.29845	0.00012706	0.24369	0.00010375	0.54213	0.00023081	425.7371467120022	41.264	0.24792	41.264	41.169	41.416	0					25	15	2	0	0	0	0.41	1	13235	13235		69.628	3.1983	1	171490			12366	3782	8002	8034	12558	12558					0.028867109774296296
GEGKLFSL	8	Unmodified	_GEGKLFSL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.7370300292969	2	425.737086	849.459619	-0.38411	-0.00016353	-0.032576	-1.3869E-05	-0.41669	-0.0001774	425.7370218325725	41.538	0.28958	41.538	41.449	41.739	0					10	7	2	0	0	0	0.44767	1	16521	16521		65.465	6.6834	1	122530			12367	3782	8002	8034	12559	12559					0.028867109774296296
GEGKPTPAL	9	Unmodified	_GEGKPTPAL_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2398681640625	2	435.239993	868.465432	-0.84546	-0.00036798	0.28292	0.00012314	-0.56255	-0.00024484	435.2401105533304	23.085	0.18444	23.085	22.971	23.155	0					12	6	2	0	0	0	0.24095	1	6883	6883		56.721	3.3696	1	197860			12368	3774	8003	8035	12560	12560					0.02593809489076193
GEGKPTPAL	9	Unmodified	_GEGKPTPAL_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2392578125	2	435.239993	868.465432	0.82883	0.00036074	-1.5991	-0.00069601	-0.7703	-0.00033527	435.23921089880815	23.258	0.31748	23.258	23.095	23.412	0					15	6	3	0	0	0	0.021961	1	7997	7997		118.74	22.553	1	943520			12369	3774	8003	8035	12561	12561					0.02593809489076193
GEGKPTPAL	9	Unmodified	_GEGKPTPAL_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2393798828125	2	435.239993	868.465432	-0.60912	-0.00026511	-0.86155	-0.00037498	-1.4707	-0.00064009	435.2394849355659	23.102	0.22625	23.102	22.992	23.218	0					8	5	2	0	0	0	0.13267	1	6999	6999		71.877	0.49956	1	98006			12370	3774	8003	8035	12562	12562					0.02593809489076193
GEGKPTPAL	9	Unmodified	_GEGKPTPAL_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2398681640625	2	435.239993	868.465432	0.79544	0.00034621	-1.2313	-0.00053592	-0.43588	-0.00018971	435.23942260243643	23.273	0.31788	23.273	23.117	23.435	0					18	6	4	0	0	0	0.048471	1	7859	7859		95.815	16.103	1	764660			12371	3774	8003	8035	12563	12563					0.02593809489076193
GEGLIIVKM	9	Unmodified	_GEGLIIVKM_					0	0	0		nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2834777832031	2	480.283346	958.552139	0.67345	0.00032344	-0.15564	-7.4753E-05	0.5178	0.00024869	480.2833478304297	43.433	0.1405	43.433	43.345	43.486	0					11	7	2	0	0	0	0.19605	1	16987	16987		62.107	7.3311	1	48018			12372	1857	8004	8036	12564	12564					0.07120472719304871
GEGPDVHMTL	10	Unmodified	_GEGPDVHMTL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.747314453125	2	528.244949	1054.47534	1.7487	0.00092372	0.013062	6.9E-06	1.7617	0.00093062	528.2451073944293	37.089	0.24572	37.089	36.991	37.237	0					11	7	2	0	0	0	0.52275	1	14495	14495		42.864	7.6636	1	181010			12373	3401	8005	8037	12565	12565					-0.04971370567818667
GEGPGAGCVY	10	Unmodified	_GEGPGAGCVY_					0	0	0			REV__ENSG00000129473|ENST00000250405|BCL2L2	REV__ENSG00000129473|ENST00000250405|BCL2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.1937255859375	2	455.192185	908.369817	0.87817	0.00039974	1.8061	0.00082213	2.6843	0.0012219	455.19326081799284	26.844	0.36531	26.844	26.688	27.053	0					18	7	3	0	0	0	0.57532	1	9551	9551		37.159	4.3467	1	779550	+		12374	14548	8006	8038	12566	12566					-0.08803286693455448
GEGPPLFL	8	Unmodified	_GEGPPLFL_					0	0	0			REV__ENSG00000136881|ENST00000259407|BAAT	REV__ENSG00000136881|ENST00000259407|BAAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.2240295410156	2	415.226354	828.438155	-2.3373	-0.00097052	-2.7951	-0.0011606	-5.1324	-0.0021311	415.22508425531726	21.725	0.14845	21.725	21.657	21.806	0					5	3	2	0	0	0	0.61433	1	6376	6376		46.766	9.738	1	64815	+		12375	14886	8007	8039	12567	12567					0.017073259487233372
GEGPWPTQR	9	Unmodified	_GEGPWPTQR_					0	0	0			REV__ENST00000576916.5_2_16:3534964-3535735:+|nuORF	REV__ENST00000576916.5_2_16:3534964-3535735:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.253173828125	2	514.251423	1026.48829	3.1986	0.0016449	0.15159	7.7953E-05	3.3502	0.0017228	514.2515112142186	18.345	0.4634	18.345	18.239	18.702	0					15	9	2	0	0	0	0.28897	1	5485	5485		51.193	3.5354	1	2954200	+		12376	20420	8008	8040	12568	12568					-0.02389171393451761
GEGQFGEVHL	10	Unmodified	_GEGQFGEVHL_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENSG00000162733|ENST00000367921|DDR2	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7568969726562	2	536.756538	1071.49852	0.29228	0.00015689	-0.026993	-1.4489E-05	0.26529	0.0001424	536.7568084215625	39.037	0.13594	39.037	38.971	39.107	0					7	4	2	0	0	0	0.41055	1	15348	15348		55.084	2.7847	1	79304			12377	7710	8009	8041	12569	12569					-0.03436608458855517
GEGRPLEVF	9	Unmodified	_GEGRPLEVF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2643127441406	2	502.263999	1002.51345	0.97393	0.00048917	-0.54387	-0.00027317	0.43006	0.000216	502.2637837967651	38.763	0.22034	38.763	38.677	38.897	0					13	8	2	0	0	0	0.4966	1	15213	15213		32.812	0.85756	1	182060			12378	4676	8010	8042	12570	12570					0.012288834091464196
GEGRVGIIL	9	Unmodified	_GEGRVGIIL_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2768249511719	2	457.276909	912.539266	0.044489	2.0344E-05	0.37851	0.00017308	0.423	0.00019343	457.2770879441184	38.455	0.31421	38.455	38.357	38.672	0					25	18	2	0	0	0	0.36892	1	12530	12530		44.377	3.8046	1	177120			12379	500	8011	8043	12571	12571					0.07949777651447221
GEGRVGIIL	9	Unmodified	_GEGRVGIIL_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2768859863281	2	457.276909	912.539266	-1.0274	-0.00046982	0.66096	0.00030224	-0.36646	-0.00016758	457.27724065995494	38.53	0.39434	38.53	38.413	38.808	0					63	21	4	0	0	0	0.25716	1	12969	12969		54.776	2.4771	1	905910			12380	500	8011	8043	12572	12572					0.07949777651447221
GEGRVGIIL	9	Unmodified	_GEGRVGIIL_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.27703857421875	2	457.276909	912.539266	0.21786	9.9621E-05	-0.66207	-0.00030275	-0.44422	-0.00020313	457.2766264742505	38.506	0.44417	38.506	38.378	38.823	0					51	22	4	0	0	0	0.35021	1	13750	13750		45.972	1.8554	1	881950			12381	500	8011	8043	12573	12573					0.07949777651447221
GEGTFGRVV	9	Unmodified	_GEGTFGRVV_					0	0	0		ENSG00000176444|ENST00000368361|CLK2;ENST00000497188.1_1_1:155234069-155238352:-|nuORF;nc|ENSG00000176444|P49760-3|CLK2	ENSG00000176444|ENST00000368361|CLK2	ENSG00000176444|ENST00000368361|CLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2432556152344	2	461.243067	920.47158	-0.84809	-0.00039117	0.59197	0.00027304	-0.25611	-0.00011813	461.24336164909863	30.563	0.11691	30.563	30.534	30.651	0					7	4	2	0	0	0	0.10915	1	10059	10059		77.318	18.536	1	79408			12382	6607	8012	8044	12574	12574					0.008163277206335806
GEGVKLQVM	9	Unmodified	_GEGVKLQVM_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.762451171875	2	480.762778	959.511002	0.074798	3.596E-05	-1.6673	-0.00080159	-1.5925	-0.00076563	480.7623637004208	34.629	0.23153	34.629	34.534	34.766	0					20	10	3	0	0	0	0.17854	1	11334	11334		64.207	3.2353	1	223860			12383	1371;9655	8013	8045	12575	12575					0.02962711679822405
GEGVKLQVM	9	Unmodified	_GEGVKLQVM_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7623596191406	2	480.762778	959.511002	-0.15582	-7.4912E-05	-0.8188	-0.00039365	-0.97462	-0.00046856	480.76271484971153	34.913	0.5072	34.913	34.761	35.268	0					38	13	4	0	0	0	0.048471	1	13035	13035		95.815	10.456	1	1122700			12384	1371;9655	8013	8045	12576	12576					0.02962711679822405
GEGVKLQVM	9	Unmodified	_GEGVKLQVM_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.762939453125	2	480.762778	959.511002	0.68005	0.00032694	-1.2849	-0.00061773	-0.60484	-0.00029079	480.7624934479597	34.895	0.6744	34.895	34.615	35.29	0					51	19	5	0	0	0	0.11898	1	13466	13466		75.043	0.78827	1	3743500			12385	1371;9655	8013	8045	12577	12577					0.02962711679822405
GEGVKLQVM	9	Unmodified	_GEGVKLQVM_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7624206542969	2	480.762778	959.511002	-0.29829	-0.0001434	-0.45132	-0.00021698	-0.74961	-0.00036038	480.7626901705942	34.648	0.39442	34.648	34.568	34.963	0					21	13	3	0	0	0	0.085655	1	12292	12292		82.75	15.257	1	527950			12386	1371;9655	8013	8045	12578	12578					0.02962711679822405
GEGVKLQVM	9	Unmodified	_GEGVKLQVM_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.76275634765625	2	480.762778	959.511002	0.92223	0.00044337	-1.4619	-0.00070282	-0.53967	-0.00025945	480.76229377273074	34.872	0.56097	34.872	34.668	35.229	0					27	11	4	0	0	0	0.078509	1	13395	13395		85.161	24.189	1	3327800			12387	1371;9655	8013	8045	12579	12579					0.02962711679822405
GEGVLTKLC	9	Unmodified	_GEGVLTKLC_					0	0	0		ENSG00000175895|ENST00000315367|PLEKHF2;PLEKHF2|p.N84Mfs*13|1|0.34|ENSG00000175895|chr8:95154292-95154292|A/-|frameshift_variant;PLEKHF2|p.K73Nfs*24|1|0.1|ENSG00000175895|chr8:95154258-95154258|A/-|frameshift_variant	ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.24951171875	2	460.249503	918.484453	-2.5589	-0.0011777	2.93	0.0013485	0.37105	0.00017078	460.2510341736501	25.395	0.28805	25.395	25.282	25.57	0					20	7	4	0	0	0	0.14603	1	8068	8068		68.787	4.5796	1	869390			12388	6583	8014	8046	12580	12580					0.02195022788487222
GEHAVVHGKVA	11	Unmodified	_GEHAVVHGKVA_					0	0	0		MVK|p.A141Rfs*18|15|0.33|ENSG00000110921|chr12:109581435-109581435|C/-|frameshift_variant;ENSG00000110921|ENST00000228510|MVK	MVK|p.A141Rfs*18|15|0.33|ENSG00000110921|chr12:109581435-109581435|C/-|frameshift_variant	MVK|p.A141Rfs*18|15|0.33|ENSG00000110921|chr12:109581435-109581435|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.5362548828125	3	368.536724	1102.58834	0.47056	0.00017342	-1.4856	-0.0005475	-1.015	-0.00037408	368.53609119972003	18.684	0.13309	18.684	18.629	18.762	0					7	3	3	0	0	0	0.7098	1	5518	5518		23.378	0	1	250620			12389	2648	8015	8047	12581	12581					0.04115065940391105
GEHGIVVF	8	Unmodified	_GEHGIVVF_					0	0	0		nc|ENSG00000167165|P19224-2|UGT1A6;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000288702|P35503|UGT1A3;ENSG00000244474|ENST00000373409|UGT1A4;ENSG00000241635|ENST00000305208|UGT1A1;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244474|P22310-2|UGT1A4;nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000241635|P22309-2|UGT1A1;nc|ENSG00000167165|P19224-3|UGT1A6;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000167165|P19224-2|UGT1A6	nc|ENSG00000167165|P19224-2|UGT1A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.2292175292969	2	429.229428	856.444303	-0.91864	-0.00039431	0.72072	0.00030935	-0.19793	-8.4957E-05	429.229701712577	39.383	0.1675	39.383	39.345	39.513	0					14	9	2	0	0	0	0.6282	1	13238	13238		44.531	7.5026	1	85780			12390	5974	8016	8048	12582	12582					0.010338441802446141
GEHGIVVF	8	Unmodified	_GEHGIVVF_					0	0	0		nc|ENSG00000167165|P19224-2|UGT1A6;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000288702|P35503|UGT1A3;ENSG00000244474|ENST00000373409|UGT1A4;ENSG00000241635|ENST00000305208|UGT1A1;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244474|P22310-2|UGT1A4;nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000241635|P22309-2|UGT1A1;nc|ENSG00000167165|P19224-3|UGT1A6;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000167165|P19224-2|UGT1A6	nc|ENSG00000167165|P19224-2|UGT1A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.22943115234375	2	429.229428	856.444303	1.0284	0.0004414	-1.0105	-0.00043374	0.017853	7.6632E-06	429.22891259732324	39.567	0.28232	39.567	39.469	39.752	0					9	6	2	0	0	0	0.68754	1	15677	15677		35.201	6.9464	1	71216			12391	5974	8016	8048	12583	12583					0.010338441802446141
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2960205078125	2	497.295633	992.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.375	1	32.375	31.875	32.875	0								0	0	0	0.20989	1	10463	10463		42.396	3.3746	1				12392	1603	8017	8049	12584	12584					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.29656982421875	2	497.295633	992.576714	0.55565	0.00027632	0.18408	9.154E-05	0.73973	0.00036786	497.29580269604776	32.631	0.3397	32.631	32.514	32.854	0					15	8	3	0	0	0	0.16806	1	11976	11976		49.442	37.931	1	208080			12393	1603	8017	8049	12585	12585					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	331.8662109375	3	331.866181	992.576714	0.52303	0.00017358	-0.55276	-0.00018344	-0.029729	-9.8661E-06	331.8660301095191	32.623	0.66535	32.623	32.454	33.119	0					44	17	4	0	0	0	0.1424	1	11979	11979		69.628	21.97	1	2948300			12394	1603	8017	8049	12586	12586					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2960205078125	2	497.295633	992.576714	3.3972	0.0016894	-1.9589	-0.00097415	1.4383	0.00071528	497.2945999411009	32.401	0.17591	32.401	32.304	32.48	0					11	7	2	0	0	0	0.25761	1	10812	10812		47.657	20.861	1	111450			12395	1603	8017	8049	12587	12587					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2954406738281	2	497.295633	992.576714	-0.028525	-1.4185E-05	-0.28099	-0.00013974	-0.30952	-0.00015392	497.2955624200323	32.574	0.61906	32.574	32.46	33.079	0					30	15	3	0	0	0	0.032383	1	12401	12401		101.6	65.982	1	985300			12396	1603	8017	8049	12588	12588					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.8662109375	3	331.866181	992.576714	0.54229	0.00017997	-0.65211	-0.00021641	-0.10982	-3.6446E-05	331.86597746422564	32.59	0.39879	32.59	32.476	32.875	0					26	10	4	0	0	0	0.28897	1	12386	12386		51.193	6.8155	1	1258200			12397	1603	8017	8049	12589	12589					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2955322265625	2	497.295633	992.576714	-0.70781	-0.00035199	0.51856	0.00025788	-0.18925	-9.4112E-05	497.2958507554984	32.532	0.52026	32.532	32.421	32.941	0					31	10	5	0	0	0	0.13726	1	12309	12309		64.207	10.856	1	2160400			12398	1603	8017	8049	12590	12590					0.0801286891704649
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7806396484375	2	533.780013	1065.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.716	1	34.716	34.216	35.216	0								0	0	0	0.43542	1	11364	11364		29.17	2.1227	1				12399	6014	8018	8050	12591	12591					0.015322510922715082
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7803955078125	2	533.780013	1065.54547	0.14687	7.8394E-05	0.4672	0.00024938	0.61406	0.00032778	533.7803571046288	34.99	0.28769	34.99	34.904	35.192	0					12	7	2	0	0	0	0.24536	1	13074	13074		68.846	33.645	1	423390			12400	6014	8018	8050	12592	12592					0.015322510922715082
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7803955078125	2	533.780013	1065.54547	1.7508	0.00093453	-0.043287	-2.3106E-05	1.7075	0.00091142	533.780203893368	35.002	0.15067	35.002	34.924	35.075	0					7	4	2	0	0	0	0.24536	1	13528	13528		68.846	23.824	1	311820			12401	6014	8018	8050	12593	12593					0.015322510922715082
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.78125	2	533.780013	1065.54547	-1.3133	-0.00070102	2.4195	0.0012915	1.1062	0.00059047	533.7813775085564	34.762	0.12217	34.762	34.673	34.795	0					8	4	2	0	0	0	0.44903	1	12336	12336		47.96	5.0953	1	42852			12402	6014	8018	8050	12594	12594					0.015322510922715082
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7810668945312	2	533.780013	1065.54547	3.3889	0.0018089	-1.6234	-0.00086656	1.7655	0.00094237	533.7792302582205	34.905	0.16859	34.905	34.847	35.015	0					6	3	2	0	0	0	0.29191	1	13441	13441		63.534	22.961	1	612820			12403	6014	8018	8050	12595	12595					0.015322510922715082
GEHLKTDL	8	Unmodified	_GEHLKTDL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7434997558594	2	456.742899	911.471246	0.037429	1.7095E-05	0.8702	0.00039746	0.90763	0.00041455	456.74333776313273	22.026	0.080509	22.026	21.954	22.034	0					4	2	2	0	0	0	0.66989	1	6160	6160		37.812	0	1	41860			12404	2007	8019	8051	12596	12596					0.01196908000770236
GEHLKTDLL	9	Unmodified	_GEHLKTDLL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2850341796875	2	513.284931	1024.55531	-0.021242	-1.0903E-05	0.058322	2.9936E-05	0.037079	1.9032E-05	513.2850554547384	29.776	0.13771	29.776	29.708	29.846	0					10	6	2	0	0	0	0.22837	1	9429	9429		58.23	5.2932	1	81151			12405	2007	8020	8052	12597	12597					0.04401439097682669
GEHLKTDLL	9	Unmodified	_GEHLKTDLL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2849731445312	2	513.284931	1024.55531	0.013107	6.7276E-06	-0.55388	-0.0002843	-0.54077	-0.00027757	513.2845678269792	30.085	0.40543	30.085	29.961	30.366	0					20	10	3	0	0	0	0.13726	1	10797	10797		70.816	12.034	1	544210			12406	2007	8020	8052	12598	12598					0.04401439097682669
GEHLKTDLL	9	Unmodified	_GEHLKTDLL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7874755859375	2	513.284931	1024.55531	-0.25091	-0.00012879	0.74726	0.00038355	0.49634	0.00025476	513.2850016028731	29.823	0.15334	29.823	29.752	29.906	0					9	6	2	0	0	0	0.3269	1	9745	9745		47.96	2.0076	1	65937			12407	2007	8020	8052	12599	12599					0.04401439097682669
GEHLKTDLL	9	Unmodified	_GEHLKTDLL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2847290039062	2	513.284931	1024.55531	-1.6627	-0.00085343	1.7268	0.00088632	0.064077	3.289E-05	513.2855073863254	29.835	0.1114	29.835	29.754	29.865	0					6	3	2	0	0	0	0.30841	1	10091	10091		49.536	10.283	1	98820			12408	2007	8020	8052	12600	12600					0.04401439097682669
GEHPKRRK	8	Unmodified	_GEHPKRRK_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.868408203125	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.333	1	33.333	32.833	33.833	0								0	0	0	1.7419	1	11180	11180		16.473	0	1				12409	1451	8021	8053	12601	12601					0.07541922725658878
GEHPKRRK	8	Unmodified	_GEHPKRRK_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2955627441406	2	504.296499	1006.57845	1.032	0.00052045	2.0386	0.0010281	3.0706	0.0015485	504.29796942997166	18.8	3.774	18.8	18.544	22.318	0					215	76	5	0	0	0	0.53424	1	6919	6919		56.721	1.9987	1	661630000			12410	1451	8021	8053	12602	12602					0.07541922725658878
GEHPKRRK	8	Unmodified	_GEHPKRRK_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53436279296875	3	336.533425	1006.57845	2.5147	0.00084627	0.079035	2.6598E-05	2.5937	0.00087287	336.5334198063538	56.837	0.98361	56.837	56.018	57.002	0					87	60	2	0	0	0	0.78999	1	21134	21134		10.866	10.866	1	106600			12411	1451	8021	8053	12603	12603					0.07541922725658878
GEHTLLVTV	9	Unmodified	_GEHTLLVTV_					0	0	0		ENST00000441173.1_1_7:99751392-99751584:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7740478515625	2	484.7742	967.533846	-0.71809	-0.00034811	0.3901	0.00018911	-0.32799	-0.000159	484.77434960188543	38.28	0.44487	38.28	38.179	38.624	0					57	23	4	0	0	0	0.20551	1	12899	12899		60.972	9.7792	1	2263900			12412	7243	8022	8054	12604	12604					0.04878054068956317
GEHTPSAL	8	Unmodified	_GEHTPSAL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;ENST00000398050.3_1_10:127355985-127356390:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.2007751464844	2	406.200867	810.387182	-0.52915	-0.00021494	0.52695	0.00021405	-0.0022076	-8.9672E-07	406.20104905856425	22.545	0.40274	22.545	22.323	22.726	0					22	9	3	0	0	0	0.34985	1	7310	7310		76.847	10.949	1	991530			12413	4912	8023	8055	12605	12605					-0.025596230961355104
GEHTPSAL	8	Unmodified	_GEHTPSAL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;ENST00000398050.3_1_10:127355985-127356390:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.2007751464844	2	406.200867	810.387182	0.40791	0.00016569	-0.35332	-0.00014352	0.054595	2.2177E-05	406.20065095054883	22.443	0.36283	22.443	22.187	22.55	0					14	7	3	0	0	0	0.52345	1	7587	7587		57.811	0	1	202110			12414	4912	8023	8055	12606	12606					-0.025596230961355104
GEHVKAIEI	9	Unmodified	_GEHVKAIEI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2797546386719	2	498.279649	994.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.973	1	26.973	26.473	27.473	0								0	0	0	0.088368	1	8262	8262		75.043	23.708	1				12415	5624	8024	8056	12607	12607					0.04725456443236453
GEIASFDKA	9	Unmodified	_GEIASFDKA_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.23455810546875	2	469.234907	936.455261	-0.63135	-0.00029625	0.11833	5.5526E-05	-0.51302	-0.00024073	469.2348827524036	29.609	0.26088	29.609	29.512	29.773	0					14	6	3	0	0	0	0.25761	1	10600	10600		54.722	3.3869	1	350470			12416	1161	8025	8057	12608	12608					-0.015507982361441464
GEIASFDKAKL	11	Unmodified	_GEIASFDKAKL_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.5520324707031	3	393.552039	1177.63429	0.43717	0.00017205	-0.6001	-0.00023617	-0.16294	-6.4124E-05	393.5518466363576	32.918	0.16629	32.918	32.806	32.972	0					9	3	3	0	0	0	0.49446	1	12466	12466		44.639	0.98865	1	1155300			12417	1161	8026	8058	12609	12609					0.05257666331931432
GEIDGNKV	8	Unmodified	_GEIDGNKV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.2137756347656	2	416.213975	830.413397	1.047	0.00043577	-1.6942	-0.00070516	-0.64724	-0.00026939	416.2132904060032	21.657	0.22798	21.657	21.564	21.792	0					8	5	2	0	0	0	0.64144	1	6930	6930		42.396	6.7778	1	398340			12418	2879	8027	8059	12610	12610					-0.008593539246589899
GEIDGNKV	8	Unmodified	_GEIDGNKV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.2137756347656	2	416.213975	830.413397	-1.4456	-0.00060166	0.9574	0.00039848	-0.48816	-0.00020318	416.21440282356707	21.389	0.17933	21.389	21.282	21.462	0					11	5	3	0	0	0	0.51384	1	6124	6124		58.782	7.4465	1	193840			12419	2879	8027	8059	12611	12611					-0.008593539246589899
GEIDGNKV	8	Unmodified	_GEIDGNKV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.2137756347656	2	416.213975	830.413397	-0.059051	-2.4578E-05	-0.31841	-0.00013253	-0.37746	-0.0001571	416.21390200203854	21.44	0.19895	21.44	21.343	21.542	0					9	4	3	0	0	0	0.59773	1	6226	6226		49.442	5.3247	1	183060			12420	2879	8027	8059	12612	12612					-0.008593539246589899
GEIDGNKV	8	Unmodified	_GEIDGNKV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.2138977050781	2	416.213975	830.413397	-2.3702	-0.0009865	2.1181	0.0008816	-0.25204	-0.0001049	416.2149162575089	21.431	0.1549	21.431	21.374	21.529	0					5	3	2	0	0	0	0.49216	1	6219	6219		60.972	7.6205	1	199000			12421	2879	8027	8059	12613	12613					-0.008593539246589899
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.281494140625	2	523.279846	1044.54514	0.76391	0.00039974	0.2292	0.00011994	0.99311	0.00051967	523.2800166486885	32.754	0.38374	32.754	32.664	33.048	0					44	15	5	0	0	0	0.1998	1	10586	10586		79.489	17.798	1	3805300			12422	2879	8028	8060	12614	12614					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2808227539062	2	523.279846	1044.54514	0.088515	4.6318E-05	0.77628	0.00040621	0.86479	0.00045253	523.2802132060107	33.016	0.48619	33.016	32.893	33.379	0					52	13	7	0	0	0	0.01518	1	12160	12160		128.6	27.35	1	18495000			12423	2879	8028	8060	12615	12615					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2808837890625	2	523.279846	1044.54514	0.48351	0.00025301	0.32898	0.00017215	0.8125	0.00042516	523.280004719148	32.807	0.32928	32.807	32.711	33.04	0					40	12	4	0	0	0	0.14893	1	10948	10948		86.882	12.627	1	4524300			12424	2879	8028	8060	12616	12616					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2801513671875	2	523.279846	1044.54514	1.7926	0.00093805	-0.80402	-0.00042073	0.98862	0.00051733	523.2793199434658	33.012	0.5272	33.012	32.875	33.402	0					35	12	4	0	0	0	0.01518	1	12582	12582		128.6	16.191	1	25421000			12425	2879	8028	8060	12617	12617					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2811279296875	2	523.279846	1044.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.013	1	33.013	32.513	33.513	0								0	0	0	0.19216	1	12598	12598		65.157	3.0498	1				12426	2879	8028	8060	12618	12618					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.28271484375	2	523.279846	1044.54514	-1.2857	-0.00067278	2.2932	0.0012	1.0075	0.00052721	523.281112534838	32.798	0.43412	32.798	32.683	33.118	0					33	12	4	0	0	0	0.39647	1	11411	11411		56.632	0.19845	1	4551800			12427	2879	8028	8060	12619	12619					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2802734375	2	523.279846	1044.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.985	1	32.985	32.485	33.485	0								0	0	0	0.010561	1	12488	12488		106.88	16.51	1				12428	2879	8028	8060	12620	12620					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2804565429688	2	523.279846	1044.54514	3.4158	0.0017874	-2.8967	-0.0015158	0.51912	0.00027165	523.2785488862829	32.951	0.54166	32.951	32.84	33.382	0					47	11	6	0	0	0	0.0081296	1	12478	12478		152.06	38.649	1	35860000			12429	2879	8028	8060	12621	12621					0.02464831372435583
GEIDKRVEV	9	Unmodified	_GEIDKRVEV_					0	0	0		nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7879638671875	2	522.787838	1043.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.457	1	24.457	23.957	24.957	0								0	0	0	0.22075	1	7628	7628		47.96	3.8427	1				12430	2825	8029	8061	12622	12622					0.04108537609317864
GEIDKRVEV	9	Unmodified	_GEIDKRVEV_					0	0	0		nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7882080078125	2	522.787838	1043.56112	0.45095	0.00023575	0.047379	2.4769E-05	0.49833	0.00026052	522.7878975261018	24.587	0.16525	24.587	24.48	24.645	0					8	3	3	0	0	0	0.25761	1	8513	8513		54.722	11.858	1	440980			12431	2825	8029	8061	12623	12623					0.04108537609317864
GEIDKRVEV	9	Unmodified	_GEIDKRVEV_					0	0	0		nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7880249023438	2	522.787838	1043.56112	1.6251	0.00084958	-1.1897	-0.00062197	0.43538	0.00022761	522.787159430851	24.574	0.16454	24.574	24.463	24.628	0					7	3	3	0	0	0	0.035106	1	8503	8503		104.01	13.413	1	828820			12432	2825	8029	8061	12624	12624					0.04108537609317864
GEIEAYKK	8	Unmodified	_GEIEAYKK_					0	0	0		nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant;nc|ENSG00000141519|Q4G0X9-2|CCDC40;CCDC40|p.K1058Nfs*21|1|0.06|ENSG00000141519|chr17:80097395-80097395|A/-|frameshift_variant;ENSG00000141519|ENST00000397545|CCDC40;ENST00000572253.5_1_17:78055330-78055681:+|nuORF	nc|ENSG00000141519|Q4G0X9-3|CCDC40	nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2529296875	2	469.2531	936.491647	0.020327	9.5383E-06	-0.30421	-0.00014275	-0.28389	-0.00013321	469.25289607890073	24.486	0.15563	24.486	24.396	24.552	0					8	4	2	0	0	0	0.65276	1	7225	7225		40.573	1.7665	1	135420			12433	407	8030	8062	12625	12625					0.020860786605680914
GEIGTKTTL	9	Unmodified	_GEIGTKTTL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2581481933594	2	460.258382	918.502212	-0.68592	-0.0003157	0.27752	0.00012773	-0.40841	-0.00018797	460.2584338393411	26.361	0.25965	26.361	26.235	26.494	0					12	6	3	0	0	0	0.037924	1	9074	9074		101.25	37.045	1	692580			12434	6575	8031	8063	12626	12626					0.03970061314987561
GEIGTKTTL	9	Unmodified	_GEIGTKTTL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2582092285156	2	460.258382	918.502212	-0.051459	-2.3684E-05	-0.36728	-0.00016904	-0.41873	-0.00019273	460.25807434489514	26.139	0.13493	26.139	26.081	26.216	0					5	3	2	0	0	0	0.43488	1	8380	8380		38.754	3.1353	1	55423			12435	6575	8031	8063	12627	12627					0.03970061314987561
GEIGTKTTL	9	Unmodified	_GEIGTKTTL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.25775146484375	2	460.258382	918.502212	-2.5597	-0.0011781	1.5282	0.00070339	-1.0315	-0.00047474	460.2590133774739	26.158	0.17706	26.158	26.069	26.246	0					10	4	3	0	0	0	0.078509	1	8390	8390		85.161	19.358	1	263320			12436	6575	8031	8063	12628	12628					0.03970061314987561
GEIGTKTTL	9	Unmodified	_GEIGTKTTL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2580871582031	2	460.258382	918.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.314	1	26.314	25.814	26.814	0								0	0	0	0.18645	1	9282	9282		52.937	8.5595	1				12437	6575	8031	8063	12629	12629					0.03970061314987561
GEIIGVKV	8	Unmodified	_GEIIGVKV_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.7548828125	2	407.755278	813.496004	-0.12837	-5.2343E-05	0.13051	5.3216E-05	0.0021425	8.7361E-07	407.75531006547266	35.853	0.18123	35.853	35.755	35.936	0					13	9	2	0	0	0	0.58597	1	11740	11740		51.335	5.3835	1	107990			12438	6819	8032	8064	12630	12630					0.08179587874144545
GEIIGVKV	8	Unmodified	_GEIIGVKV_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.755126953125	2	407.755278	813.496004	-0.57024	-0.00023252	0.38865	0.00015847	-0.18159	-7.4044E-05	407.7554047233009	36.131	0.23863	36.131	36.008	36.247	0					16	6	3	0	0	0	0.28427	1	13593	13593		87.754	16.459	1	516410			12439	6819	8032	8064	12631	12631					0.08179587874144545
GEIIGVKV	8	Unmodified	_GEIIGVKV_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.7548828125	2	407.755278	813.496004	-1.397	-0.00056963	0.84259	0.00034357	-0.55439	-0.00022606	407.75562839425385	35.888	0.15714	35.888	35.814	35.971	0					10	7	2	0	0	0	0.30437	1	12142	12142		82.305	5.4584	1	177440			12440	6819	8032	8064	12632	12632					0.08179587874144545
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2968444824219	2	464.29731	926.580068	-0.44121	-0.00020485	0.50529	0.00023461	0.064087	2.9755E-05	464.29720574074884	42.564	0.18291	42.564	42.492	42.675	0					14	11	2	0	0	0	0.44593	1	13523	13523		37.812	0	1	61316			12441	6819	8033	8065	12633	12633					0.1138411897103424
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2969970703125	2	464.29731	926.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.793	1	42.793	42.293	43.293	0								0	0	0	0.14033	1	16783	16783		62.107	14.45	1				12442	6819	8033	8065	12634	12634					0.1138411897103424
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2974853515625	2	464.29731	926.580068	-2.3595	-0.0010955	2.2738	0.0010557	-0.085652	-3.9768E-05	464.2985683253689	42.645	0.14359	42.645	42.565	42.708	0					11	8	2	0	0	0	0.35021	1	14869	14869		45.972	0	1	48807			12443	6819	8033	8065	12635	12635					0.1138411897103424
GEIILHSV	8	Unmodified	_GEIILHSV_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2501220703125	2	434.25036	866.486168	0.69817	0.00030318	-1.1715	-0.00050874	-0.47337	-0.00020556	434.2498348998375	34.108	0.19257	34.108	34.037	34.23	0					8	5	2	0	0	0	0.5676	1	12707	12707		53.351	5.4358	1	75991			12444	4321	8034	8066	12636	12636					0.04758399868762808
GEIIQSVYEDL	11	Unmodified	_GEIIQSVYEDL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.5471496582031	3	422.546842	1264.6187	1.0537	0.00044526	-0.24559	-0.00010378	0.80815	0.00034148	422.5467757077344	31.76	0.31892	31.76	31.65	31.969	0					10	6	2	0	0	0	0.70921	1	11923	11923		26.75	4.1881	1	507720			12445	3722	8035	8067	12637	12637					-0.003026649757657651
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2550048828125	2	461.255643	920.496732	0.7753	0.00035761	-1.3179	-0.00060788	-0.54259	-0.00025027	461.25500337193415	38.012	0.36402	38.012	37.911	38.275	0					29	16	3	0	0	0	0.085655	1	14429	14429		82.75	22.632	1	287020			12446	4294;7586	8036	8068	12638	12638					0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.25616455078125	2	461.255643	920.496732	-0.84961	-0.00039189	1.0176	0.00046939	0.16803	7.7503E-05	461.2563956989523	37.739	0.14885	37.739	37.683	37.832	0					11	8	2	0	0	0	0.22837	1	12748	12748		58.23	10.573	1	60949			12447	4294;7586	8036	8068	12639	12639					0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2554016113281	2	461.255643	920.496732	0.72261	0.00033331	-0.64522	-0.00029761	0.077393	3.5698E-05	461.25532648966987	37.959	0.3278	37.959	37.846	38.174	0					20	11	3	0	0	0	0.063171	1	14867	14867		90.601	23.107	1	342890			12448	4294;7586	8036	8068	12640	12640					0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2554626464844	2	461.255643	920.496732	-0.14765	-6.8104E-05	-0.57593	-0.00026565	-0.72358	-0.00033375	461.25559080235314	37.748	0.12098	37.748	37.666	37.787	0					7	5	2	0	0	0	0.22837	1	13510	13510		58.23	12.258	1	35678			12449	4294;7586	8036	8068	12641	12641					0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.25604248046875	2	461.255643	920.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.768	1	37.768	37.268	38.268	0								0	0	0	0.20989	1	13515	13515		49.536	5.4192	1				12450	4294;7586	8036	8068	12642	12642					0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2554931640625	2	461.255643	920.496732	0.83785	0.00038646	-0.94201	-0.00043451	-0.10416	-4.8044E-05	461.2550953229197	37.895	0.29947	37.895	37.739	38.039	0					12	6	2	0	0	0	0.085655	1	14866	14866		82.75	19.217	1	633860			12451	4294;7586	8036	8068	12643	12643					0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2553405761719	2	461.255643	920.496732	2.5522	0.0011772	-2.7216	-0.0012554	-0.16941	-7.8142E-05	461.25437637293425	37.878	0.38622	37.878	37.77	38.156	0					13	8	3	0	0	0	0.085655	1	14859	14859		82.75	21.779	1	423180			12452	4294;7586	8036	8068	12644	12644					0.033303825231769224
GEIKIHKM	8	Unmodified	_GEIKIHKM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENST00000552045.1_1_12:50589526-50594661:-|nuORF	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2738037109375	2	478.273312	954.532072	0.016377	7.8328E-06	0.77813	0.00037216	0.79451	0.00037999	478.2737018014822	19.571	0.15492	19.571	19.492	19.647	0					6	4	2	0	0	0	0.30437	1	5095	5095		82.305	26.801	1	345980			12453	1248	8037	8069	12645	12645					0.05298721779342941
GEIKIHKM	8	Unmodified	_GEIKIHKM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENST00000552045.1_1_12:50589526-50594661:-|nuORF	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2731018066406	2	478.273312	954.532072	0.42801	0.0002047	-1.1314	-0.00054111	-0.70338	-0.00033641	478.2728855833921	19.929	0.59515	19.929	19.569	20.164	0					23	13	3	0	0	0	0.29286	1	6088	6088		84.916	28.194	1	2787000			12454	1248	8037	8069	12646	12646					0.05298721779342941
GEIKIHKM	8	Unmodified	_GEIKIHKM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENST00000552045.1_1_12:50589526-50594661:-|nuORF	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.27294921875	2	478.273312	954.532072	-1.4562	-0.00069646	0.44918	0.00021483	-1.007	-0.00048163	478.27378439032327	19.623	0.19397	19.623	19.517	19.711	0					13	6	3	0	0	0	0.37144	1	5351	5351		74.255	13.283	1	498790			12455	1248	8037	8069	12647	12647					0.05298721779342941
GEIKIHKM	8	Unmodified	_GEIKIHKM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENST00000552045.1_1_12:50589526-50594661:-|nuORF	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2730712890625	2	478.273312	954.532072	-0.65386	-0.00031272	-0.23123	-0.00011059	-0.88509	-0.00042332	478.2733915292851	19.799	0.32099	19.799	19.69	20.011	0					13	6	3	0	0	0	0.24622	1	6195	6195		108.09	39.603	1	1341800			12456	1248	8037	8069	12648	12648					0.05298721779342941
GEIKIHKM	8	Unmodified	_GEIKIHKM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENST00000552045.1_1_12:50589526-50594661:-|nuORF	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.27288818359375	2	478.273312	954.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.809	1	19.809	19.309	20.309	0								0	0	0	1.7419	1	6188	6188		96.19	31.983	1				12457	1248	8037	8069	12649	12649					0.05298721779342941
GEIKIHKM	8	Unmodified	_GEIKIHKM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENST00000552045.1_1_12:50589526-50594661:-|nuORF	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2730712890625	2	478.273312	954.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.841	1	19.841	19.341	20.341	0								0	0	0	1.7419	1	6203	6203		76.774	25.439	1				12458	1248	8037	8069	12650	12650					0.05298721779342941
GEIKKGAP	8	Unmodified	_GEIKKGAP_					0	0	0		tr|U7SUZ6|U7SUZ6_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01451PE=4SV=1	tr|U7SUZ6|U7SUZ6_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01451PE=4SV=1	tr|U7SUZ6|U7SUZ6_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01451PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.23699951171875	2	400.237253	798.459953	-2.2493	-0.00090025	1.9091	0.0007641	-0.34019	-0.00013616	400.23802541763627	20.082	0.22347	20.082	19.906	20.129	0					9	5	2	0	0	0	0.5676	1	5554	5554		53.351	3.9099	1	90773			12459	22834	8038	8070	12651	12651					0.052661306972822786
GEIKLTMQQ	9	Oxidation (M)	_GEIKLTM(Oxidation (M))QQ_		GEIKLTM(1)QQ		GEIKLTM(100)QQ	0	0	1			REV__C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	REV__C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2767944335938	2	532.276249	1062.53795	0.35781	0.00019045	0.32152	0.00017114	0.67933	0.00036159	532.276515011313	22.468	0.11655	22.468	22.384	22.501	0					5	3	2	0	0	0	0.037924	1	6363	6363		101.25	15.391	1	137550	+		12460	12308	8039	8071	12652	12652		477			0.009177755003292987
GEIKLTMQQ	9	Oxidation (M)	_GEIKLTM(Oxidation (M))QQ_		GEIKLTM(1)QQ		GEIKLTM(73)QQ	0	0	1			REV__C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	REV__C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2762451171875	2	532.276249	1062.53795	0.29466	0.00015684	-1.1971	-0.00063718	-0.90242	-0.00048034	532.2756046690538	22.531	0.10614	22.531	22.459	22.565	0					5	3	2	0	0	0	0.12834	1	6637	6637		72.879	18.103	1	105220	+		12461	12308	8039	8071	12653	12653		477			0.009177755003292987
GEIKLTMQQ	9	Oxidation (M)	_GEIKLTM(Oxidation (M))QQ_		GEIKLTM(1)QQ		GEIKLTM(51)QQ	0	0	1			REV__C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	REV__C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.18646240234375	3	355.186592	1062.53795	-0.055114	-1.9576E-05	-0.061066	-2.169E-05	-0.11618	-4.1265E-05	355.1865474841385	22.696	0.16725	22.696	22.638	22.805	0					6	3	2	0	0	0	0.28897	1	7602	7602		51.193	14.875	1	182870	+		12462	12308	8039	8071	12654	12654		477			0.009177755003292987
GEIKVLQGF	9	Unmodified	_GEIKVLQGF_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7846984863281	2	495.784567	989.554582	-0.38193	-0.00018936	-0.18234	-9.0404E-05	-0.56428	-0.00027976	495.784668375006	43.76	0.13847	43.76	43.692	43.83	0					11	7	2	0	0	0	0.10506	1	16470	16470		82.241	23.459	1	50557			12463	1225	8040	8072	12655	12655					0.05938644448622199
GEIQAGAKL	9	Unmodified	_GEIQAGAKL_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025279-52025462:+|nuORF;DYNC1I2|p.F272Lfs*47|1|0.14|ENSG00000077380|chr2:171726234-171726234|T/-|frameshift_variant	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7530212402344	2	443.753267	885.491981	-1.1592	-0.00051439	0.8583	0.00038087	-0.30088	-0.00013352	443.75355001391347	26.214	0.17572	26.214	26.148	26.323	0					7	5	2	0	0	0	0.21263	1	8220	8220		60.118	5.3419	1	110120			12464	1583	8041	8073	12656	12656					0.04465498380432109
GEIQEIVKT	9	Unmodified	_GEIQEIVKT_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7846374511719	2	508.784764	1015.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.607	1	32.607	32.107	33.107	0								0	0	0	0.23489	1	12407	12407		45.908	1.3771	1				12465	7015	8042	8074	12657	12657					0.04782019377796587
GEIQVQRTYL	10	Unmodified	_GEIQVQRTYL_					0	0	0			REV__ENSG00000128045|ENST00000248706|RASL11B	REV__ENSG00000128045|ENST00000248706|RASL11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.8873291015625	3	402.887422	1205.64044	0.9531	0.00038399	-0.92893	-0.00037426	0.024173	9.7388E-06	402.88691819908956	19.929	0.43526	19.929	19.823	20.258	0					21	9	4	0	0	0	0.60076	1	6113	6113		31.634	1.0654	1	1022000	+		12466	14510	8043	8075	12658	12658					0.04584184563486815
GEIRATAF	8	Unmodified	_GEIRATAF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.73236083984375	2	432.732335	863.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.283	1	30.283	29.783	30.783	0								0	0	0	1.7419	1	10292	10292		54.776	8.8041	1				12467	3782	8044	8076	12659	12659					0.01292942691884491
GEIRKQIE	8	Unmodified	_GEIRKQIE_					0	0	0			REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant	REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7792053222656	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.169	1	45.169	44.669	45.669	0								0	0	0	1.7419	1	18095	18095		44.377	2.9506	1		+		12468	16393	8045	8077	12660	12660					0.05308572300475589
GEISSLYLC	9	Unmodified	_GEISSLYLC_					0	0	0		nc|ENSG00000198870|Q8NE28-3|STKLD1;ENSG00000198870|ENST00000371957|STKLD1	nc|ENSG00000198870|Q8NE28-3|STKLD1	nc|ENSG00000198870|Q8NE28-3|STKLD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7381286621094	2	492.738968	983.463383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.408	1	17.408	16.908	17.908	0								0	0	0	0.28164	1	4907	4907		38.806	5.2906	1				12469	7629	8046	8078	12661	12661					-0.029009873110339868
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7257385253906	2	486.726392	971.438231	-0.044711	-2.1762E-05	-0.67094	-0.00032656	-0.71565	-0.00034832	486.72619480062144	31.725	0.26562	31.725	31.616	31.881	0					26	12	3	0	0	0	0.03984	1	10188	10188		99.375	27.997	1	296470			12470	4052	8047	8079	12662	12662					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7254638671875	2	486.726392	971.438231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.7	1	31.7	31.2	32.2	0								0	0	0	0.046123	1	10201	10201		87.754	38.544	1				12471	4052	8047	8079	12663	12663					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.72613525390625	2	486.726392	971.438231	0.70454	0.00034292	-1.449	-0.00070524	-0.74441	-0.00036232	486.72587812769416	31.98	0.41472	31.98	31.86	32.274	0					24	10	5	0	0	0	0.0074068	1	11687	11687		147.69	84.387	1	2600700			12472	4052	8047	8079	12664	12664					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.72625732421875	2	486.726392	971.438231	-0.31509	-0.00015336	-0.040677	-1.9799E-05	-0.35577	-0.00017316	486.72640441883345	31.975	0.21136	31.975	31.887	32.099	0					15	5	4	0	0	0	0.1115	1	11684	11684		76.774	26.75	1	418470			12473	4052	8047	8079	12665	12665					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7262878417969	2	486.726392	971.438231	-1.2426	-0.00060482	0.81734	0.00039782	-0.42528	-0.000207	486.72690110513145	31.765	0.28303	31.765	31.657	31.94	0					24	11	3	0	0	0	0.047412	1	10534	10534		96.19	35.896	1	706750			12474	4052	8047	8079	12666	12666					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7261657714844	2	486.726392	971.438231	0.63787	0.00031047	-1.4303	-0.00069618	-0.79246	-0.00038571	486.7257933681279	31.953	0.44519	31.953	31.844	32.289	0					24	9	5	0	0	0	0.013383	1	12108	12108		133.81	57.039	1	3443800			12475	4052	8047	8079	12667	12667					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7271423339844	2	486.726392	971.438231	0.41906	0.00020397	0.21218	0.00010327	0.63124	0.00030724	486.7265790176996	31.726	0.18639	31.726	31.645	31.832	0					9	5	3	0	0	0	0.14603	1	10967	10967		68.787	26.312	1	94291			12476	4052	8047	8079	12668	12668					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7261047363281	2	486.726392	971.438231	-0.23615	-0.00011494	-0.55179	-0.00026857	-0.78795	-0.00038352	486.72622740949413	31.738	0.23744	31.738	31.632	31.869	0					17	7	3	0	0	0	0.047412	1	10959	10959		96.19	42.839	1	543990			12477	4052	8047	8079	12669	12669					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.72607421875	2	486.726392	971.438231	-0.54602	-0.00026576	-0.065523	-3.1892E-05	-0.61154	-0.00029765	486.7263882460131	31.926	0.31849	31.926	31.818	32.136	0					14	6	3	0	0	0	0.030949	2	11997	11976;11997		108.09	47.116	1	1424100			12478	4052	8047	8079	12670;12671	12671					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7261047363281	2	486.726392	971.438231	0.82013	0.00039918	-1.8465	-0.00089873	-1.0263	-0.00049955	486.7256519771408	31.91	0.36777	31.91	31.802	32.17	0					19	7	4	0	0	0	0.0040803	1	11988	11988		162.31	88.331	1	4416700			12479	4052	8047	8079	12672	12672					-0.04863042113595384
GEIVEKIGV	9	Unmodified	_GEIVEKIGV_					0	0	0		POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant;ENSG00000186141|ENST00000334163|POLR3C	POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant	POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2763671875	2	472.276575	942.538597	-0.58344	-0.00027555	-1.1216	-0.00052972	-1.7051	-0.00080526	472.27618190851814	34.876	0.27212	34.876	34.761	35.033	0					16	7	3	0	0	0	0.063171	1	13021	13021		90.601	11.15	1	392430			12480	7123	8048	8080	12673	12673					0.06502938211713172
GEIVIKNL	8	Unmodified	_GEIVIKNL_					0	0	0		nc|ENSG00000070882|Q9H4L5-3|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3	nc|ENSG00000070882|Q9H4L5-3|OSBPL3	nc|ENSG00000070882|Q9H4L5-3|OSBPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2738342285156	2	443.273835	884.533118	-0.35155	-0.00015583	0.74013	0.00032808	0.38857	0.00017224	443.2739326733208	36.177	0.16244	36.177	36.084	36.247	0					7	4	2	0	0	0	0.29286	1	13628	13628		84.916	5.4645	1	85683			12481	1460	8049	8081	12674	12674					0.08623259419891838
GEIVIKNL	8	Unmodified	_GEIVIKNL_					0	0	0		nc|ENSG00000070882|Q9H4L5-3|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3	nc|ENSG00000070882|Q9H4L5-3|OSBPL3	nc|ENSG00000070882|Q9H4L5-3|OSBPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.27374267578125	2	443.273835	884.533118	0.51644	0.00022892	-0.8756	-0.00038813	-0.35916	-0.00015921	443.2736030623014	36.144	0.24458	36.144	36.079	36.324	0					11	7	2	0	0	0	0.29286	1	14065	14065		84.916	8.1414	1	166700			12482	1460	8049	8081	12675	12675					0.08623259419891838
GEIVTIAHL	9	Unmodified	_GEIVTIAHL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7767028808594	2	476.776742	951.538931	2.2567	0.0010759	-1.9329	-0.00092158	0.32378	0.00015437	476.7758032202945	41.472	0.16724	41.472	41.428	41.595	0					7	4	2	0	0	0	0.071197	1	16509	16509		87.754	24.448	1	108500			12483	7015	8050	8082	12676	12676					0.06122357931565148
GEKAPQAVF	9	Unmodified	_GEKAPQAVF_					0	0	0			REV__TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant	REV__TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7550048828125	2	473.753267	945.491981	0.6926	0.00032812	2.7253	0.0012911	3.4179	0.0016193	473.7544430583007	26.183	0.38536	26.183	26.096	26.481	0					13	9	2	0	0	0	0.53083	1	8992	8992		29.15	1.2673	1	78979	+		12484	13902	8051	8083	12677	12677					0.01705498380431436
GEKDTAKSL	9	Unmodified	_GEKDTAKSL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7516174316406	2	474.753464	947.492375	-0.46028	-0.00021852	-2.4529	-0.0011645	-2.9132	-0.001383	474.75226333259127	16.272	0.22739	16.272	16.135	16.362	0					11	5	3	0	0	0	0.24169	1	4365	4365		56.632	0.19845	1	953890			12485	1064	8052	8084	12678	12678					0.01652873309626557
GEKDTAKSL	9	Unmodified	_GEKDTAKSL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.75311279296875	2	474.753464	947.492375	-1.5827	-0.00075137	1.9077	0.00090568	0.32502	0.0001543	474.754301873251	15.984	0.1117	15.984	15.908	16.02	0					9	4	3	0	0	0	0.14578	1	3739	3739		68.846	15.909	1	152970			12486	1064	8052	8084	12679	12679					0.01652873309626557
GEKDTAKSL	9	Unmodified	_GEKDTAKSL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.75311279296875	2	474.753464	947.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.244	1	16.244	15.744	16.744	0								0	0	0	0.023427	1	4603	4603		99.013	19.3	1				12487	1064	8052	8084	12680	12680					0.01652873309626557
GEKDTAKSL	9	Unmodified	_GEKDTAKSL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7534484863281	2	474.753464	947.492375	0.717	0.0003404	-1.163	-0.00055214	-0.44602	-0.00021175	474.7528511820134	16.191	0.16825	16.191	16.131	16.3	0					10	3	4	0	0	0	0.052435	1	4443	4443		94.409	17.092	1	1015500			12488	1064	8052	8084	12681	12681					0.01652873309626557
GEKGEPGAIL	10	Unmodified	_GEKGEPGAIL_					0	0	0		COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant;COL15A1|p.E1069Rfs*84|1|0.36|ENSG00000204291|chr9:99056264-99056264|A/-|frameshift_variant;COL15A1|p.L1176Ifs*39|1|0.32|ENSG00000204291|chr9:99062087-99062088|-/A|frameshift_variant;ENSG00000204291|ENST00000375001|COL15A1	COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7637023925781	2	485.763832	969.513111	-0.089113	-4.3288E-05	0.46783	0.00022726	0.37872	0.00018397	485.76405033293514	37.665	0.32302	37.665	37.567	37.89	0					20	10	3	0	0	0	0.34667	1	14726	14726		62.107	0	1	250210			12489	596	8053	8085	12682	12682					0.027134636892810704
GEKGERIHL	9	Unmodified	_GEKGERIHL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	346.8611145019531	3	346.861207	1037.56179	-0.78891	-0.00027364	0.5898	0.00020458	-0.19911	-6.9063E-05	346.86141931106505	20.157	0.2734	20.157	20.058	20.332	0					17	9	3	0	0	0	0.24334	1	5575	5575		56.434	12.317	1	415080			12490	1085	8054	8086	12683	12683					0.04451377049053917
GEKGERIHL	9	Unmodified	_GEKGERIHL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7879028320312	2	519.788173	1037.56179	0.21926	0.00011397	0.51398	0.00026716	0.73324	0.00038113	519.7883377928248	20.157	0.19013	20.157	20.058	20.248	0					14	6	3	0	0	0	0.35096	1	5576	5576		38.754	13.303	1	509570			12491	1085	8054	8086	12684	12684					0.04451377049053917
GEKGERIHL	9	Unmodified	_GEKGERIHL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7886962890625	2	519.788173	1037.56179	0.99473	0.00051705	-0.098833	-5.1372E-05	0.8959	0.00046568	519.7880785321661	20.223	0.15003	20.223	20.129	20.279	0					9	3	3	0	0	0	0.079477	1	5635	5635		78.264	20.811	1	256170			12492	1085	8054	8086	12685	12685					0.04451377049053917
GEKGIMVL	8	Unmodified	_GEKGIMVL_					0	0	0		ENST00000396362.3_1_7:27087888-27088119:+|nuORF;ENSG00000145912|ENST00000274606|NHP2	ENST00000396362.3_1_7:27087888-27088119:+|nuORF	ENST00000396362.3_1_7:27087888-27088119:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	423.74139404296875	2	423.741314	845.468075	-1.1405	-0.00048329	0.86134	0.00036499	-0.2792	-0.00011831	423.74179738963335	37.482	0.22918	37.482	37.407	37.636	0					17	12	2	0	0	0	0.3961	1	12668	12668		71.296	2.2027	1	85398			12493	4702	8055	8087	12686	12686					0.03915941622392438
GEKGISTPR	9	Unmodified	_GEKGISTPR_					0	0	0		nc|ENSG836|P61566|ERVK-24_env;nc|ENSG833|P61570|ERVK-25_env;nc|ENSG840|P61565|ERVK-21_env;nc|ENSG811|Q9UKH3|ERVK-9_env;nc|ENSG845|O71037|ERVK-19_env;nc|ENSG825|Q69384|ERVK-6_env;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG830|Q9HDB8|ERVK-5_env	nc|ENSG836|P61566|ERVK-24_env	nc|ENSG836|P61566|ERVK-24_env	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7608642578125	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.318	1	22.318	21.818	22.818	0								0	0	0	0.28666	1	6550	6550		37.812	2.6108	1				12494	11835	8056	8088	12687	12687					0.034679992663768644
GEKGPVKVL	9	Unmodified	_GEKGPVKVL_					0	0	0		TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7868347167969	2	463.78711	925.559667	0.60165	0.00027904	-1.3792	-0.00063968	-0.7776	-0.00036064	463.78664670509033	23.18	0.22769	23.18	23.049	23.277	0					14	5	4	0	0	0	0.10915	1	7629	7629		77.318	16.346	1	621920			12495	4433	8057	8089	12688	12688					0.09390948311227021
GEKGPVKVL	9	Unmodified	_GEKGPVKVL_					0	0	0		TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7868957519531	2	463.78711	925.559667	-0.73781	-0.00034219	-0.35904	-0.00016652	-1.0968	-0.0005087	463.78739152831474	22.886	0.18302	22.886	22.794	22.977	0					23	6	5	0	0	0	0.36892	1	6791	6791		44.377	5.571	1	279350			12496	4433	8057	8089	12689	12689					0.09390948311227021
GEKGPVKVL	9	Unmodified	_GEKGPVKVL_					0	0	0		TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7871398925781	2	463.78711	925.559667	0.69721	0.00032336	-1.3982	-0.00064847	-0.701	-0.00032512	463.7867103272369	23.055	0.26843	23.055	22.944	23.212	0					18	5	5	0	0	0	0.085655	1	7902	7902		82.75	29.814	1	1554000			12497	4433	8057	8089	12690	12690					0.09390948311227021
GEKGPVKVL	9	Unmodified	_GEKGPVKVL_					0	0	0		TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7867431640625	2	463.78711	925.559667	0.73955	0.000343	-1.9651	-0.0009114	-1.2256	-0.0005684	463.78640269082035	23.077	0.41327	23.077	22.922	23.335	0					18	8	4	0	0	0	0.1424	1	7762	7762		69.628	5.4204	1	1435500			12498	4433	8057	8089	12691	12691					0.09390948311227021
GEKGTGKTL	9	Unmodified	_GEKGTGKTL_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.75140380859375	2	445.750724	889.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.245	1	14.245	13.745	14.745	0								0	0	0	0.18645	1	3050	3050		52.937	12.159	1				12499	3806	8058	8090	12692	12692					0.03773194517805223
GEKIWSTAL	9	Unmodified	_GEKIWSTAL_					0	0	0			REV__ENST00000409547.5_2_2:233651983-233655408:+|nuORF	REV__ENST00000409547.5_2_2:233651983-233655408:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.5172119140625	3	335.518559	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.51	1	13.51	13.01	14.01	0								0	0	0	0.3119	1	3092	3092		32.812	2.3088	1		+		12500	18993	8059	8091	12693	12693					0.032220540689422705
GEKKAYVRL	9	Unmodified	_GEKKAYVRL_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000471152.1_2_3:161146917-161147007:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.3173217773438	2	532.316566	1062.61858	0.37904	0.00020177	1.4031	0.00074691	1.7822	0.00094868	532.3169765945873	19.974	0.10727	19.974	19.89	19.997	0					8	3	3	0	0	0	0.48623	1	5271	5271		19.997	2.6318	1	58012			12501	7544	8060	8092	12694	12694					0.0897742460556401
GEKKAYVRL	9	Unmodified	_GEKKAYVRL_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000471152.1_2_3:161146917-161147007:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.21337890625	3	355.213469	1062.61858	0.48962	0.00017392	-0.42314	-0.00015031	0.066474	2.3612E-05	355.21326625874866	20.33	0.42902	20.33	20.226	20.655	0					18	9	3	0	0	0	0.3269	1	6278	6278		47.96	17.642	1	1995900			12502	7544	8060	8092	12695	12695					0.0897742460556401
GEKKAYVRL	9	Unmodified	_GEKKAYVRL_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000471152.1_2_3:161146917-161147007:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.3172607421875	2	532.316566	1062.61858	0.12495	6.6511E-05	1.0702	0.00056966	1.1951	0.00063618	532.3173510227144	20.33	0.20731	20.33	20.226	20.433	0					11	4	3	0	0	0	0.2546	1	6301	6301		40.058	16.535	1	667130			12503	7544	8060	8092	12696	12696					0.0897742460556401
GEKKLLVKV	9	Unmodified	_GEKKLLVKV_					0	0	0		ENSG00000119707|ENST00000261973|RBM25;ENST00000528081.5_1_14:73544165-73555113:+|nuORF;nc|ENSG00000119707|P49756-2|RBM25;nc|ENSG00000119707|P49756-3|RBM25	ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.33966064453125	2	507.33951	1012.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.228	1	22.228	21.728	22.728	0								0	0	0	0.36609	1	6250	6250		20.947	3.582	1				12504	3133	8061	8093	12697	12697					0.15864069787812696
GEKKNEALM	9	Unmodified	_GEKKNEALM_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3;PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant;PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant;PHF3|p.E392Vfs*39|1|0.09|ENSG00000118482|chr6:63684870-63684871|-/TGCTGATAAAACTGAGAACACCCTTG|frameshift_variant	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2634582519531	2	510.263142	1018.51173	0.96471	0.00049226	-1.4112	-0.00072009	-0.4465	-0.00022783	510.262584938991	18.535	0.18189	18.535	18.473	18.655	0					10	4	3	0	0	0	0.17854	1	5450	5450		64.207	21.811	1	218050			12505	3076	8062	8094	12698	12698					0.0032150632886214225
GEKLLRPSL	9	Unmodified	_GEKLLRPSL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.2098083496094	3	338.209836	1011.60768	1.4835	0.00050172	-0.99228	-0.0003356	0.49118	0.00016612	338.2092540147085	29.522	0.43421	29.522	29.282	29.717	0					26	9	4	0	0	0	0.16806	1	10948	10948		65.465	10.743	1	1101500			12506	1351	8063	8095	12699	12699					0.10234022231270501
GEKLLRPSL	9	Unmodified	_GEKLLRPSL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.2098388671875	3	338.209836	1011.60768	3.0176	0.0010206	-2.7334	-0.00092445	0.28426	9.6139E-05	338.2088107310822	29.433	0.45711	29.433	29.224	29.681	0					29	9	4	0	0	0	0.032383	1	10793	10793		106.68	26.228	1	1130600			12507	1351	8063	8095	12700	12700					0.10234022231270501
GEKNVFEAL	9	Unmodified	_GEKNVFEAL_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7634582519531	2	503.763832	1005.51311	-0.060677	-3.0567E-05	0.051198	2.5792E-05	-0.0094792	-4.7753E-06	503.7637335697853	41.488	0.29362	41.488	41.426	41.719	0					30	14	3	0	0	0	0.13726	1	15777	15777		70.816	17.88	1	321100			12508	925	8064	8096	12701	12701					0.010574636892783928
GEKNVFEAL	9	Unmodified	_GEKNVFEAL_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.76373291015625	2	503.763832	1005.51311	1.0155	0.00051156	-0.89788	-0.00045232	0.1176	5.9242E-05	503.7632894170917	41.508	0.27037	41.508	41.391	41.661	0					22	11	3	0	0	0	0.11411	1	16325	16325		76.17	12.863	1	299170			12509	925	8064	8096	12702	12702					0.010574636892783928
GEKPAKLCVIA	11	Unmodified	_GEKPAKLCVIA_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.550537109375	3	376.886365	1127.63727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.559	1	37.559	37.059	38.059	0								0	0	0	0.45674	1	14248	14248		22.562	3.2016	1				12510	6302	8065	8097	12703	12703					0.07855218185136437
GEKQPELQI	9	Unmodified	_GEKQPELQI_					0	0	0		ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2824096679688	2	521.282389	1040.55022	1.0433	0.00054388	-0.24165	-0.00012597	0.80169	0.00041791	521.2823084503519	32.918	0.36497	32.918	32.762	33.127	0					22	10	3	0	0	0	0.15558	1	11481	11481		66.962	6.8437	1	183600			12511	2111	8066	8098	12704	12704					0.031571352350511006
GEKQPELQI	9	Unmodified	_GEKQPELQI_					0	0	0		ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2831420898438	2	521.282389	1040.55022	1.624	0.00084654	-0.72394	-0.00037738	0.90003	0.00046917	521.2819954376823	33.102	0.44214	33.102	32.956	33.399	0					21	9	3	0	0	0	0.076532	1	12556	12556		85.862	27.632	1	1119600			12512	2111	8066	8098	12705	12705					0.031571352350511006
GEKRASALQ	9	Unmodified	_GEKRASALQ_					0	0	0		ENST00000572346.5_1_17:79526287-79533945:-|nuORF	ENST00000572346.5_1_17:79526287-79533945:-|nuORF	ENST00000572346.5_1_17:79526287-79533945:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.26898193359375	2	480.267073	958.519593	3.4624	0.0016629	0.07622	3.6606E-05	3.5386	0.0016995	480.26726970781516	24.383	0.13492	24.383	24.32	24.455	0					9	4	3	0	0	0	0.13726	1	7453	7453		70.816	5.3508	1	134540			12513	10812	8067	8099	12706	12706					0.03867401640661683
GEKRHCFDV	9	Unmodified	_GEKRHCFDV_					0	0	0		nc|ENSG00000161405|Q9UKT9-16|IKZF3;nc|ENSG00000161405|Q9UKT9-12|IKZF3;nc|ENSG00000161405|Q9UKT9-11|IKZF3;nc|ENSG00000161405|Q9UKT9-10|IKZF3;nc|ENSG00000161405|Q9UKT9-13|IKZF3;nc|ENSG00000161405|Q9UKT9-5|IKZF3;nc|ENSG00000161405|Q9UKT9-9|IKZF3;nc|ENSG00000161405|Q9UKT9-6|IKZF3;nc|ENSG00000161405|Q9UKT9-8|IKZF3;nc|ENSG00000161405|Q9UKT9-2|IKZF3;nc|ENSG00000161405|Q9UKT9-15|IKZF3;nc|ENSG00000161405|Q9UKT9-4|IKZF3;nc|ENSG00000161405|Q9UKT9-3|IKZF3;nc|ENSG00000161405|Q9UKT9-7|IKZF3;ENSG00000161405|ENST00000346872|IKZF3	nc|ENSG00000161405|Q9UKT9-16|IKZF3	nc|ENSG00000161405|Q9UKT9-16|IKZF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7611694335938	2	545.758558	1089.50256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.946	1	17.946	17.446	18.446	0								0	0	0	0.23445	1	4584	4584		45.972	1.5951	1				12514	5408	8068	8100	12707	12707					-0.03860842236804274
GEKRRGGK	8	Unmodified	_GEKRRGGK_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant;ENST00000502824.1_1_5:31799421-31843499:+|nuORF;PDZD2|p.G594Afs*45|1|0.09|ENSG00000133401|chr5:32052720-32052720|A/-|frameshift_variant	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2633361816406	2	444.262125	886.509697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.183	1	30.183	29.683	30.683	0								0	0	0	1.7419	1	9888	9888		30.504	1.3541	1				12515	3854	8069	8101	12708	12708					0.06190258425954198
GEKSESISV	9	Unmodified	_GEKSESISV_					0	0	0		ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2370300292969	2	468.237647	934.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.123	1	24.123	23.623	24.623	0								0	0	0	0.26578	1	7076	7076		41.427	4.9799	1				12516	7548	8070	8102	12709	12709					-0.009111194443221393
GEKSVHEGAL	10	Unmodified	_GEKSVHEGAL_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7646484375	2	513.764363	1025.51417	1.2479	0.00064115	-0.80238	-0.00041223	0.44556	0.00022891	513.764274689623	18.505	0.060452	18.505	18.473	18.534	0					4	2	2	0	0	0	0.30252	1	4623	4623		66.962	24.098	1	160650			12517	1630	8071	8103	12710	12710					0.0024367805817746557
GEKSVHEGAL	10	Unmodified	_GEKSVHEGAL_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7653198242188	2	513.764363	1025.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.524	1	18.524	18.024	19.024	0								0	0	0	0.11831	1	4854	4854		76.17	30.197	1				12518	1630	8071	8103	12711	12711					0.0024367805817746557
GEKSVHEGAL	10	Unmodified	_GEKSVHEGAL_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7643432617188	2	513.764363	1025.51417	0.63261	0.00032501	-0.58473	-0.00030041	0.047885	2.4601E-05	513.7640677614679	18.769	0.2393	18.769	18.661	18.9	0					7	5	2	0	0	0	0.24329	1	5830	5830		74.165	26.508	1	743010			12519	1630	8071	8103	12712	12712					0.0024367805817746557
GEKSVHEGAL	10	Unmodified	_GEKSVHEGAL_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.7653198242188	2	513.764363	1025.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.62	1	18.62	18.12	19.12	0								0	0	0	0.20542	1	4896	4896		63.534	33.216	1				12520	1630	8071	8103	12713	12713					0.0024367805817746557
GEKSVHEGAL	10	Unmodified	_GEKSVHEGAL_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7642822265625	2	513.764363	1025.51417	1.454	0.00074699	1.4627	0.00075148	2.9167	0.0014985	513.7649162434483	18.792	0.54277	18.792	18.702	19.245	0					13	11	2	0	0	0	0.36432	1	5689	5689		60.167	3.5347	1	1103600			12521	1630	8071	8103	12714	12714					0.0024367805817746557
GEKTAGINV	9	Unmodified	_GEKTAGINV_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.74273681640625	2	444.742899	887.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.73	1	24.73	24.23	25.23	0								0	0	0	0.10826	1	7342	7342		69.628	3.1983	1				12522	2913	8072	8104	12715	12715					0.023009080007682314
GEKTAGINV	9	Unmodified	_GEKTAGINV_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.74273681640625	2	444.742899	887.471246	-0.38077	-0.00016935	0.70787	0.00031482	0.3271	0.00014547	444.74329902151237	25.051	0.33391	25.051	24.814	25.148	0					18	8	3	0	0	0	0.19952	1	8503	8503		61.691	8.3398	1	296930			12523	2913	8072	8104	12716	12716					0.023009080007682314
GEKTAGINV	9	Unmodified	_GEKTAGINV_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7425842285156	2	444.742899	887.471246	2.5901	0.0011519	-1.7747	-0.0007893	0.81535	0.00036262	444.74234273022137	24.937	0.40194	24.937	24.691	25.093	0					17	8	3	0	0	0	0.076532	1	8680	8680		85.862	3.1113	1	700920			12524	2913	8072	8104	12717	12717					0.023009080007682314
GEKTDRVGV	9	Unmodified	_GEKTDRVGV_					0	0	0		GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant;GIGYF2|p.L631*|1|0.4|ENSG00000204120|chr2:232809801-232809801|T/-|frameshift_variant;GIGYF2|p.L640Wfs*27|1|0.5|ENSG00000204120|chr2:232811261-232811261|T/-|frameshift_variant;GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant	GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.75927734375	2	480.759081	959.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.326	1	17.326	16.826	17.826	0								0	0	0	0.36359	1	4112	4112		21.686	0.73882	1				12525	7673	8073	8105	12718	12718					0.022236954037680334
GEKTEQKNWKL	11	Unmodified	_GEKTEQKNWKL_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|75|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|75|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|75|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2453918457031	3	454.245498	1359.71466	-1.1665	-0.0005299	0.45533	0.00020683	-0.71121	-0.00032307	454.2457606391195	23.83	0.48844	23.83	23.669	24.157	0					29	16	4	0	0	0	0.78104	1	7206	7206		22.562	22.562	1	965770			12526	11292	8074	8106	12719	12719					0.04919527654988087
GEKTIIITC	9	Unmodified	_GEKTIIITC_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2704162597656	2	489.270435	976.526318	-0.43449	-0.00021258	-0.15918	-7.7882E-05	-0.59367	-0.00029046	489.2706140734267	35.337	0.91526	35.337	35.104	36.019	0					53	24	4	0	0	0	0.19952	1	13217	13217		61.691	4.9702	1	1090800			12527	6476	8075	8107	12720	12720					0.03711578477020794
GEKTIIITC	9	Unmodified	_GEKTIIITC_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.26983642578125	2	489.270435	976.526318	-1.2518	-0.00061247	0.69974	0.00034236	-0.55207	-0.00027011	489.270745294209	35.099	0.349	35.099	34.988	35.337	0					25	15	2	0	0	0	0.16806	1	11848	11848		65.465	17.808	1	191370			12528	6476	8075	8107	12721	12721					0.03711578477020794
GEKTIIITC	9	Unmodified	_GEKTIIITC_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2705383300781	2	489.270435	976.526318	-2.8549	-0.0013968	2.2982	0.0011245	-0.55671	-0.00027238	489.2719449011671	35.071	0.40128	35.071	34.977	35.378	0					27	13	3	0	0	0	0.21419	1	12450	12450		59.931	12.273	1	210900			12529	6476	8075	8107	12722	12722					0.03711578477020794
GEKTISVVL	9	Unmodified	_GEKTISVVL_					0	0	0		ENST00000594511.1_1_19:44078923-44079610:-|nuORF;ENST00000595789.5_1_19:44056953-44079610:-|nuORF;ENSG00000073050|ENST00000262887|XRCC1	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.28411865234375	2	473.2844	944.554247	-0.53018	-0.00025092	0.70778	0.00033498	0.1776	8.4056E-05	473.2843605973904	37.501	0.21661	37.501	37.383	37.599	0					17	6	3	0	0	0	0.078509	1	14206	14206		85.161	20.954	1	208680			12530	1506	8076	8108	12723	12723					0.079752247287729
GEKTISVVL	9	Unmodified	_GEKTISVVL_					0	0	0		ENST00000594511.1_1_19:44078923-44079610:-|nuORF;ENST00000595789.5_1_19:44056953-44079610:-|nuORF;ENSG00000073050|ENST00000262887|XRCC1	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2842712402344	2	473.2844	944.554247	-1.5428	-0.00073019	1.3058	0.00061804	-0.23697	-0.00011215	473.28506743564407	37.209	0.21733	37.209	37.147	37.365	0					26	11	3	0	0	0	0.098791	1	12582	12582		79.713	10.926	1	484790			12531	1506	8076	8108	12724	12724					0.079752247287729
GEKTISVVL	9	Unmodified	_GEKTISVVL_					0	0	0		ENST00000594511.1_1_19:44078923-44079610:-|nuORF;ENST00000595789.5_1_19:44056953-44079610:-|nuORF;ENSG00000073050|ENST00000262887|XRCC1	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.28424072265625	2	473.2844	944.554247	0.59806	0.00028305	-1.1097	-0.0005252	-0.51164	-0.00024215	473.28389911951496	37.461	0.42387	37.461	37.328	37.752	0					30	13	4	0	0	0	0.1424	1	14624	14624		69.628	14.123	1	2054400			12532	1506	8076	8108	12725	12725					0.079752247287729
GEKTISVVL	9	Unmodified	_GEKTISVVL_					0	0	0		ENST00000594511.1_1_19:44078923-44079610:-|nuORF;ENST00000595789.5_1_19:44056953-44079610:-|nuORF;ENSG00000073050|ENST00000262887|XRCC1	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2845153808594	2	473.2844	944.554247	-0.50169	-0.00023744	0.48699	0.00023049	-0.014694	-6.9545E-06	473.28456762941676	37.231	0.28424	37.231	37.131	37.415	0					27	14	3	0	0	0	0.15163	1	13317	13317		67.494	21.521	1	198360			12533	1506	8076	8108	12726	12726					0.079752247287729
GEKTRAQR	8	Unmodified	_GEKTRAQR_					0	0	0			REV__ENST00000261318.4_1_12:117152555-117152831:-|nuORF	REV__ENST00000261318.4_1_12:117152555-117152831:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.26580810546875	2	473.264865	944.515176	2.4054	0.0011384	0.18015	8.5259E-05	2.5856	0.0012237	473.26491815420945	37.049	0.35496	37.049	36.897	37.252	0					15	7	3	0	0	0	0.5535	1	14436	14436		54.776	3.5836	1	1020900	+		12534	18014	8077	8109	12727	12727					0.04069937217752795
GEKTVAAVM	9	Unmodified	_GEKTVAAVM_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant;ENST00000467423.1_1_1:19565574-19565811:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2413330078125	2	453.241678	904.468803	-1.1988	-0.00054334	0.28028	0.00012703	-0.9185	-0.0004163	453.24188926150174	26.464	0.12365	26.464	26.376	26.499	0					8	4	2	0	0	0	0.53064	1	8331	8331		29.17	0.020503	1	78088			12535	908	8078	8110	12728	12728					0.01274736271443544
GEKTVAAVM	9	Unmodified	_GEKTVAAVM_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant;ENST00000467423.1_1_1:19565574-19565811:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2414855957031	2	453.241678	904.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.749	1	26.749	26.249	27.249	0								0	0	0	0.29356	1	9612	9612		36.447	2.9312	1				12536	908	8078	8110	12729	12729					0.01274736271443544
GEKVDFNTF	9	Unmodified	_GEKVDFNTF_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7542114257812	2	528.753464	1055.49238	0.50377	0.00026637	0.62448	0.0003302	1.1282	0.00059656	528.7535439479619	38.24	0.21471	38.24	38.143	38.357	0					23	12	3	0	0	0	0.17062	1	12469	12469		65.157	19.185	1	269130			12537	6592	8079	8111	12730	12730					-0.03315126690404213
GEKVDFNTF	9	Unmodified	_GEKVDFNTF_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7542724609375	2	528.753464	1055.49238	0.11018	5.826E-05	1.0755	0.00056869	1.1857	0.00062695	528.753904704628	38.554	0.1461	38.554	38.485	38.631	0					17	5	4	0	0	0	0.035106	1	14648	14648		104.01	43.895	1	1822400			12538	6592	8079	8111	12731	12731					-0.03315126690404213
GEKVDFNTF	9	Unmodified	_GEKVDFNTF_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.754150390625	2	528.753464	1055.49238	0.14446	7.6386E-05	1.4143	0.00074784	1.5588	0.00082423	528.7540513777137	38.316	0.25579	38.316	38.26	38.516	0					33	13	3	0	0	0	0.035106	1	12927	12927		104.01	35.529	1	338760			12539	6592	8079	8111	12732	12732					-0.03315126690404213
GEKVDFNTF	9	Unmodified	_GEKVDFNTF_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7545776367188	2	528.753464	1055.49238	1.7435	0.00092187	0.20974	0.0001109	1.9532	0.0010328	528.7534312525927	38.534	0.42796	38.534	38.415	38.843	0					42	15	4	0	0	0	0.02429	1	15113	15113		114.89	43.517	1	2974100			12540	6592	8079	8111	12733	12733					-0.03315126690404213
GEKVDFNTF	9	Unmodified	_GEKVDFNTF_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.75439453125	2	528.753464	1055.49238	3.4597	0.0018293	-1.9125	-0.0010112	1.5472	0.00081809	528.7523313956093	38.474	0.48874	38.474	38.382	38.871	0					26	10	5	0	0	0	0.035106	1	15136	15136		104.01	46.202	1	4131300			12541	6592	8079	8111	12734	12734					-0.03315126690404213
GEKVSKVSL	9	Unmodified	_GEKVSKVSL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A;KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant;KIF13A|p.V1116Sfs*4|2|0.23|ENSG00000137177|chr6:17787791-17787792|-/T|frameshift_variant;KIF13A|p.V1116Sfs*23|1|0.39|ENSG00000137177|chr6:17787792-17787792|T/-|frameshift_variant	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7814636230469	2	473.782025	945.549496	0.69553	0.00032953	-2.1977	-0.0010412	-1.5022	-0.0007117	473.781009739267	22.363	0.10777	22.363	22.307	22.414	0					4	2	2	0	0	0	0.10506	1	7264	7264		78.264	5.3845	1	61553			12542	4147	8080	8112	12735	12735					0.07454340586002672
GEKVVKTAL	9	Unmodified	_GEKVVKTAL_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.79241943359375	2	472.792392	943.570232	0.64884	0.00030676	-0.64088	-0.000303	0.0079528	3.76E-06	472.7920227863176	21.453	0.10076	21.453	21.404	21.504	0					4	2	2	0	0	0	0.029571	1	6829	6829		109.44	29.726	1	154740			12543	3874;10265	8081	8113	12736	12736					0.09618930965643813
GEKVVKTAL	9	Unmodified	_GEKVVKTAL_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7923583984375	2	472.792392	943.570232	0.23157	0.00010948	-0.42216	-0.00019959	-0.19059	-9.0108E-05	472.7920152699446	21.479	0.18777	21.479	21.392	21.579	0					10	4	3	0	0	0	0.14578	1	6844	6844		68.846	12.125	1	517430			12544	3874;10265	8081	8113	12737	12737					0.09618930965643813
GEKVVKTAL	9	Unmodified	_GEKVVKTAL_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.792724609375	2	472.792392	943.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.157	1	21.157	20.657	21.657	0								0	0	0	0.097963	1	6028	6028		72.243	8.7094	1				12545	3874;10265	8081	8113	12738	12738					0.09618930965643813
GEKVVKTAL	9	Unmodified	_GEKVVKTAL_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7924499511719	2	472.792392	943.570232	-0.12252	-5.7926E-05	-0.6239	-0.00029498	-0.74642	-0.0003529	472.79192789938963	21.361	0.2185	21.361	21.273	21.492	0					11	4	4	0	0	0	0.019258	1	7070	7070		123.21	30.065	1	575940			12546	3874;10265	8081	8113	12739	12739					0.09618930965643813
GEKVVKTAL	9	Unmodified	_GEKVVKTAL_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7919921875	2	472.792392	943.570232	-0.1528	-7.2243E-05	-1.4246	-0.00067352	-1.5774	-0.00074576	472.79190268081936	21.223	0.10985	21.223	21.168	21.278	0					4	2	2	0	0	0	0.061298	1	6124	6124		91.265	11.553	1	105370			12547	3874;10265	8081	8113	12740	12740					0.09618930965643813
GEKVVKTAL	9	Unmodified	_GEKVVKTAL_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7924499511719	2	472.792392	943.570232	-0.57416	-0.00027146	-0.29042	-0.00013731	-0.86459	-0.00040877	472.7920964300741	21.347	0.16616	21.347	21.288	21.454	0					8	3	3	0	0	0	0.040209	1	6947	6947		99.013	29.385	1	909720			12548	3874;10265	8081	8113	12741	12741					0.09618930965643813
GELAIKDANA	10	Unmodified	_GELAIKDANA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.26666259765625	2	501.266739	1000.51892	-0.97026	-0.00048636	0.46548	0.00023333	-0.50477	-0.00025303	501.2669205164279	26.351	0.14231	26.351	26.274	26.416	0					11	4	3	0	0	0	0.31894	1	8281	8281		65.157	6.9273	1	199670		+	12549	11643	8082	8114	12742	12742					0.018685622009343206
GELAIKDANA	10	Unmodified	_GELAIKDANA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2660827636719	2	501.266739	1000.51892	0.14745	7.3911E-05	-0.74217	-0.00037202	-0.59472	-0.00029811	501.26585073046186	26.424	0.18681	26.424	26.336	26.523	0					8	4	3	0	0	0	0.36432	1	8518	8518		60.167	7.078	1	188080		+	12550	11643	8082	8114	12743	12743					0.018685622009343206
GELAKHAV	8	Unmodified	_GELAKHAV_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BK|p.E114D|1|0.39|ENSG00000197903|chr6:27146457-27146457|C/G|missense_variant;HIST1H2BJ|p.E114K|1|0.21|ENSG00000124635|chr6:27132411-27132411|C/T|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.7347106933594	2	412.734877	823.455202	-0.42563	-0.00017567	0.21939	9.0548E-05	-0.20624	-8.5124E-05	412.734899177899	17.843	0.1146	17.843	17.784	17.899	0					6	2	3	0	0	0	0.32815	1	5234	5234		79.451	5.4763	1	953680			12551	5257;7505	8083	8115	12744	12744					0.03641246554514055
GELALTRP	8	Unmodified	_GELALTRP_					0	0	0			REV__ENST00000504670.5_1_3:139108768-139108951:+|nuORF	REV__ENST00000504670.5_1_3:139108768-139108951:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.7477111816406	2	428.747985	855.481417	-0.52543	-0.00022528	0.11406	4.8901E-05	-0.41138	-0.00017638	428.7480342780151	20.538	0.2678	20.538	20.428	20.696	0					10	5	3	0	0	0	0.49216	1	6684	6684		60.972	0.67798	1	677790	+		12552	19828	8084	8116	12745	12745					0.047895157259858934
GELANEVKV	9	Unmodified	_GELANEVKV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7637939453125	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.214	1	31.214	30.714	31.714	0								0	0	0	0.27521	1	10016	10016		40.058	3.6114	1				12553	2007	8085	8117	12746	12746					0.032654636892857525
GELANEVKV	9	Unmodified	_GELANEVKV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.763671875	2	479.763832	957.513111	-0.21191	-0.00010166	0.6861	0.00032917	0.47419	0.0002275	479.76407278177936	31.449	0.17197	31.449	31.359	31.531	0					7	4	2	0	0	0	0.063171	1	11456	11456		90.601	5.44	1	248610			12554	2007	8085	8117	12747	12747					0.032654636892857525
GELAPLRT	8	Unmodified	_GELAPLRT_					0	0	0		CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant;ENSG00000160161|ENST00000291495|CILP2	CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant	CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.747802734375	2	428.747985	855.481417	-0.42618	-0.00018273	-0.30071	-0.00012893	-0.72689	-0.00031165	428.74792470554496	20.552	0.16545	20.552	20.443	20.609	0					9	3	3	0	0	0	0.49216	1	6557	6557		60.972	0	1	998150			12555	543	8086	8118	12748	12748					0.047895157259858934
GELASYGEIT	10	Unmodified	_GELASYGEIT_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2472534179688	2	520.250754	1038.48696	-0.22648	-0.00011783	-3.9811	-0.0020712	-4.2076	-0.002189	520.2476602504676	29.561	0.75913	29.561	28.991	29.75	0					27	16	4	0	0	0	0.44469	1	10959	10959		51.335	7.2187	1	314930			12556	7578	8087	8119	12749	12749					-0.03074850272855656
GELEAAKAL	9	Unmodified	_GELEAAKAL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7559814453125	2	451.2531	900.491647	-1.19	-0.00053698	2.1078	0.00095115	0.91784	0.00041418	451.2538043192383	31.061	0.14168	31.061	30.923	31.065	0					8	5	2	0	0	0	0.28897	1	10257	10257		51.193	1.7511	1	80996			12557	5941	8088	8120	12750	12750					0.037420786605480316
GELEKLFQLGP	11	Unmodified	_GELEKLFQLGP_					0	0	0		ENSG00000250254|ENST00000504686|PTTG2;nc|ENSG00000250254|Q9NZH5|PTTG2	ENSG00000250254|ENST00000504686|PTTG2	ENSG00000250254|ENST00000504686|PTTG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	410.894287109375	3	410.895806	1229.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.385	1	22.385	21.885	22.885	0								0	0	0	0.45674	1	6321	6321		24.232	0	1				12558	7987	8089	8121	12751	12751					0.05994239366032161
GELEPQTR	8	Unmodified	_GELEPQTR_					0	0	0		ATP1A2|p.S220L|1|0.61|ENSG00000018625|chr1:160125164-160125164|C/T|missense_variant	ATP1A2|p.S220L|1|0.61|ENSG00000018625|chr1:160125164-160125164|C/T|missense_variant	ATP1A2|p.S220L|1|0.61|ENSG00000018625|chr1:160125164-160125164|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.23760986328125	2	465.237981	928.461409	-0.82145	-0.00038217	-0.62013	-0.00028851	-1.4416	-0.00067068	465.2373652522518	23.271	0.13284	23.271	23.179	23.311	0					7	4	2	0	0	0	0.66095	1	6968	6968		39.253	2.8061	1	54264			12559	255	8090	8122	12752	12752					-0.005682800046088232
GELFLVRLK	9	Unmodified	_GELFLVRLK_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-5|RGSL1	REV__nc|ENSG00000121446|A5PLK6-5|RGSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8947448730469	3	358.893848	1073.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.877	1	23.877	23.377	24.377	0								0	0	0	0.3693	1	7966	7966		19.997	0.89325	1		+		12560	21000	8091	8123	12753	12753					0.12583185645030426
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.7826843261719	2	507.782556	1013.55056	-0.09307	-4.7259E-05	-0.072217	-3.6671E-05	-0.16529	-8.393E-05	507.78253052187955	34.955	0.24154	34.955	34.831	35.072	0					19	10	2	0	0	0	0.029105	1	11431	11431		118.74	13.997	1	776590			12561	3804	8092	8124	12754	12754					0.04432554954883017
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7824401855469	2	507.782556	1013.55056	-0.030115	-1.5292E-05	-0.45192	-0.00022947	-0.48203	-0.00024477	507.7824135317685	35.201	0.81274	35.201	34.718	35.531	0					32	21	2	0	0	0	0.030421	1	13179	13179		117.81	21.621	1	4348900			12562	3804	8092	8124	12755	12755					0.04432554954883017
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7823181152344	2	507.782556	1013.55056	-0.61411	-0.00031184	-0.87391	-0.00044376	-1.488	-0.00075559	507.7818336378332	35.014	0.33031	35.014	34.914	35.244	0					24	14	2	0	0	0	0.05785	1	11813	11813		106.68	19.748	1	851790			12563	3804	8092	8124	12756	12756					0.04432554954883017
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7823791503906	2	507.782556	1013.55056	-0.51597	-0.000262	0.82491	0.00041887	0.30894	0.00015687	507.7827923349665	34.986	0.15439	34.986	34.928	35.082	0					8	6	2	0	0	0	0.38194	1	11822	11822		58.23	3.4536	1	120490			12564	3804	8092	8124	12757	12757					0.04432554954883017
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7824401855469	2	507.782556	1013.55056	1.124	0.00057073	-2.9706	-0.0015084	-1.8466	-0.00093768	507.78088483569104	35.218	0.72096	35.218	34.892	35.613	0					32	20	2	0	0	0	0.0090663	1	13623	13623		146.79	38.698	1	5282300			12565	3804	8092	8124	12758	12758					0.04432554954883017
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7826232910156	2	507.782556	1013.55056	-0.38038	-0.00019315	0.24054	0.00012214	-0.13984	-7.1007E-05	507.7826955241243	35.21	0.29277	35.21	35.089	35.382	0					13	8	2	0	0	0	0.04084	1	13618	13618		112.41	16.22	1	684870			12566	3804	8092	8124	12759	12759					0.04432554954883017
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.78253173828125	2	507.782556	1013.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.123	1	35.123	34.623	35.623	0								0	0	0	3.2326E-05	1	13531	13531		154.12	46.031	1				12567	3804	8092	8124	12760	12760					0.04432554954883017
GELGVMLLM	9	Unmodified	_GELGVMLLM_					0	0	0			REV__tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	REV__tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7518005371094	2	481.756107	961.49766	-0.28662	-0.00013808	-2.3211	-0.0011182	-2.6077	-0.0012563	481.75201116198775	28.807	0.30529	28.807	28.675	28.981	0					20	7	4	0	0	0	0.30268	1	9578	9578		50.025	2.3672	1	472200	+		12568	21899	8093	8125	12761	12761					0.015371375762356365
GELILKSAM	9	Unmodified	_GELILKSAM_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2725524902344	2	481.272978	960.531403	0.68341	0.00032891	-1.5587	-0.00075015	-0.87527	-0.00042124	481.27206717356603	36.834	0.13089	36.834	36.771	36.902	0					6	4	2	0	0	0	0.27123	1	14380	14380		53.089	10.225	1	90811			12569	2315	8094	8126	12762	12762					0.04955882339629625
GELKHGPLAL	10	Unmodified	_GELKHGPLAL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.8035888671875	2	517.803291	1033.59203	-0.42738	-0.0002213	1.1788	0.00061038	0.7514	0.00038908	517.8039283153942	30.342	0.29767	30.342	30.249	30.546	0					13	6	3	0	0	0	0.52275	1	11341	11341		42.864	0.46813	1	260330			12570	7554	8095	8127	12763	12763					0.07657735714224145
GELKIAYQL	9	Unmodified	_GELKIAYQL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7977905273438	2	517.797675	1033.5808	0.047842	2.4772E-05	-0.081021	-4.1952E-05	-0.033179	-1.718E-05	517.7978407586672	42.551	0.1132	42.551	42.498	42.611	0					10	6	2	0	0	0	0.22504	1	16100	16100		59.931	14.909	1	86338			12571	7015	8096	8128	12764	12764					0.06534913620089355
GELKIAYQL	9	Unmodified	_GELKIAYQL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7974853515625	2	517.797675	1033.5808	1.542	0.00079844	-0.97093	-0.00050275	0.57107	0.0002957	517.7973286238413	42.507	0.1984	42.507	42.442	42.64	0					13	10	2	0	0	0	0.39283	1	16675	16675		35.152	9.578	1	70619			12572	7015	8096	8128	12765	12765					0.06534913620089355
GELKIAYQL	9	Unmodified	_GELKIAYQL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7980346679688	2	517.797675	1033.5808	3.3342	0.0017264	-2.3998	-0.0012426	0.9344	0.00048383	517.7963251309088	42.456	0.29764	42.456	42.323	42.621	0					18	8	3	0	0	0	0.14673	1	16957	16957		70.816	12.034	1	287780			12573	7015	8096	8128	12766	12766					0.06534913620089355
GELLKLGAQA	10	Unmodified	_GELLKLGAQA_					0	0	0			REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2950744628906	2	500.295299	998.576045	-0.16195	-8.1023E-05	-1.0485	-0.00052454	-1.2104	-0.00060557	500.29521356811733	35.747	0.31615	35.747	35.664	35.98	0					12	8	2	0	0	0	0.46128	1	13414	13414		49.536	2.7696	1	408320	+		12574	19241	8097	8129	12767	12767					0.07670029477321805
GELLLHRVFR	10	Unmodified	_GELLLHRVFR_					0	0	0		ENST00000258399.7_1_2:219427411-219427504:-|nuORF	ENST00000258399.7_1_2:219427411-219427504:-|nuORF	ENST00000258399.7_1_2:219427411-219427504:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.369384765625	2	620.369664	1238.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.921	1	29.921	29.421	30.421	0								0	0	0	0.4201	1	11132	11132		13.454	0	1				12575	8274	8098	8130	12768	12768					0.11496180170888692
GELMRALWY	9	Unmodified	_GELMRALWY_					0	0	0			REV__nc|ENSG00000124535|Q96S55-4|WRNIP1	REV__nc|ENSG00000124535|Q96S55-4|WRNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	380.1966552734375	3	380.19531	1137.5641	0.52461	0.00019945	2.8961	0.0011011	3.4207	0.0013005	380.1963037939749	21.918	0.12336	21.918	21.841	21.965	0					6	3	2	0	0	0	0.35045	1	6124	6124		62.107	23.301	1	95341	+		12576	14403	8099	8131	12769	12769					0.0008208946248942084
GELNSRLSS	9	Unmodified	_GELNSRLSS_					0	0	0		TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.74835205078125	2	481.748713	961.482873	0.080652	3.8854E-05	-0.82327	-0.00039661	-0.74261	-0.00035775	481.7482888337355	17.009	0.28006	17.009	16.923	17.203	0					17	9	3	0	0	0	0.07136	1	3968	3968		87.696	12.653	1	914780			12577	7688	8100	8132	12770	12770					0.0005910502410415575
GELNSRLSS	9	Unmodified	_GELNSRLSS_					0	0	0		TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.748291015625	2	481.748713	961.482873	-1.3325	-0.00064195	0.40673	0.00019594	-0.9258	-0.000446	481.748910358752	17.057	0.22678	17.057	16.993	17.22	0					19	7	4	0	0	0	0.10915	1	4193	4193		77.318	13.11	1	839550			12578	7688	8100	8132	12771	12771					0.0005910502410415575
GELNSRLSS	9	Unmodified	_GELNSRLSS_					0	0	0		TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7490234375	2	481.748713	961.482873	-0.28785	-0.00013867	-0.27638	-0.00013315	-0.56423	-0.00027182	481.7485118654136	17.075	0.23328	17.075	16.967	17.2	0					15	7	3	0	0	0	0.15163	1	4174	4174		67.494	9.2637	1	466210			12579	7688	8100	8132	12772	12772					0.0005910502410415575
GELPALSLGH	10	Unmodified	_GELPALSLGH_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH11|p.C1849Sfs*8|1|0.05|ENSG00000105877|chr7:21683868-21683869|-/CTAAAATTCTCATAAATAG|frameshift_variant;DNAH11|p.K1250Nfs*43|1|0.63|ENSG00000105877|chr7:21606522-21606522|A/-|frameshift_variant;DNAH11|p.C1251Mfs*5|1|0.41|ENSG00000105877|chr7:21606521-21606522|-/A|frameshift_variant;DNAH11|p.Q945Kfs*4|1|0.32|ENSG00000105877|chr7:21599946-21599946|T/-|frameshift_variant;DNAH11|p.K873Nfs*4|1|0.31|ENSG00000105877|chr7:21591523-21591523|A/-|frameshift_variant;DNAH11|p.N833Tfs*2|1|0.17|ENSG00000105877|chr7:21591404-21591404|A/-|frameshift_variant;DNAH11|p.L441Ifs*25|1|0.26|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant;DNAH11|p.M199Hfs*42|1|0.05|ENSG00000105877|chr7:21558898-21558899|-/AACAT|frameshift_variant;DNAH11|p.M199Lfs*3|1|0.04|ENSG00000105877|chr7:21558900-21558901|-/TTAAATTA|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.85052490234375	3	331.850308	992.529095	0.54232	0.00017997	-0.24627	-8.1724E-05	0.29605	9.8245E-05	331.8502374017808	24.686	0.26521	24.686	24.577	24.842	0					12	5	3	0	0	0	0.58896	1	8657	8657		40.058	13.308	1	750790			12580	812	8101	8133	12773	12773					0.03253169926188093
GELPEHAKI	9	Unmodified	_GELPEHAKI_					0	0	0		ENSG00000173674|ENST00000379607|EIF1AX;ENSG00000198692|ENST00000361365|EIF1AY;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX	ENSG00000173674|ENST00000379607|EIF1AX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2718505859375	2	497.271824	992.529095	-1.1516	-0.00057266	1.3644	0.0006785	0.21284	0.00010584	497.2725344209501	24.449	0.35208	24.449	24.182	24.534	0					20	11	2	0	0	0	0.27249	1	7473	7473		52.937	5.2794	1	152790			12581	6442	8102	8134	12774	12774					0.032531699261767244
GELPEHAKI	9	Unmodified	_GELPEHAKI_					0	0	0		ENSG00000173674|ENST00000379607|EIF1AX;ENSG00000198692|ENST00000361365|EIF1AY;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX	ENSG00000173674|ENST00000379607|EIF1AX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2718505859375	2	497.271824	992.529095	0.78616	0.00039094	-2.3196	-0.0011535	-1.5334	-0.00076254	497.27147956173445	24.665	0.51662	24.665	24.294	24.811	0					34	10	5	0	0	0	0.056004	1	8664	8664		93.143	16.369	1	1089500			12582	6442	8102	8134	12775	12775					0.032531699261767244
GELPLPLSQ	9	Unmodified	_GELPLPLSQ_					0	0	0			REV__ENST00000558939.5_1_15:70341027-70341300:-|nuORF	REV__ENST00000558939.5_1_15:70341027-70341300:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2708435058594	2	477.26875	952.522947	2.2369	0.0010676	1.6457	0.00078543	3.8826	0.001853	477.26965006744535	17.343	0.1536	17.343	17.259	17.413	0					8	3	3	0	0	0	0.13267	1	4985	4985		71.877	13.096	1	967150	+		12583	20275	8103	8135	12776	12776					0.04478651694671498
GELRTLLQ	8	Unmodified	_GELRTLLQ_					0	0	0		CLCN1|p.K856Efs*16|1|0.37|ENSG00000188037|chr7:143350620-143350621|-/G|frameshift_variant;CLCN1|p.P939Lfs*9|1|0.39|ENSG00000188037|chr7:143351810-143351810|C/-|frameshift_variant;ENSG00000188037|ENST00000343257|CLCN1	CLCN1|p.K856Efs*16|1|0.37|ENSG00000188037|chr7:143350620-143350621|-/G|frameshift_variant	CLCN1|p.K856Efs*16|1|0.37|ENSG00000188037|chr7:143350620-143350621|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.27398681640625	2	465.274367	928.53418	-0.49128	-0.00022858	-0.042326	-1.9693E-05	-0.53361	-0.00024827	465.2743159752223	15.755	0.46816	15.755	15.546	16.014	0					18	9	3	0	0	0	0.22799	1	4185	4185		124.59	21.821	1	3644500			12584	551	8104	8136	12777	12777					0.06705473788815652
GELSKVTKV	9	Unmodified	_GELSKVTKV_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.78948974609375	2	480.78985	959.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.226	1	23.226	22.726	23.726	0								0	0	0	0.14211	1	6688	6688		61.691	10.499	1				12585	3115	8105	8137	12778	12778					0.0837462710304635
GELSKVTKV	9	Unmodified	_GELSKVTKV_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7894592285156	2	480.78985	959.565146	-0.158	-7.5964E-05	-0.28159	-0.00013539	-0.43959	-0.00021135	480.7896486627079	23.526	0.35872	23.526	23.473	23.832	0					11	8	3	0	0	0	0.067603	1	7806	7806		89.029	11.711	1	605530			12586	3115	8105	8137	12779	12779					0.0837462710304635
GELSKVTKV	9	Unmodified	_GELSKVTKV_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7895812988281	2	480.78985	959.565146	0.68053	0.00032719	-1.2558	-0.00060378	-0.57527	-0.00027658	480.78921888599217	23.505	0.3672	23.505	23.395	23.762	0					15	7	5	0	0	0	0.21419	1	8120	8120		59.931	20.678	1	1150700			12587	3115	8105	8137	12780	12780					0.0837462710304635
GELSKVTKV	9	Unmodified	_GELSKVTKV_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7893371582031	2	480.78985	959.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.356	1	23.356	22.856	23.856	0								0	0	0	0.17415	1	7115	7115		54.722	11.858	1				12588	3115	8105	8137	12781	12781					0.0837462710304635
GELSKVTKV	9	Unmodified	_GELSKVTKV_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7900390625	2	480.78985	959.565146	2.3343	0.0011223	-1.9399	-0.00093268	0.39441	0.00018963	480.7888222200718	23.459	0.41049	23.459	23.352	23.763	0					12	8	3	0	0	0	0.082776	1	7970	7970		83.647	11.77	1	1559400			12589	3115	8105	8137	12782	12782					0.0837462710304635
GELSQVLSL	9	Unmodified	_GELSQVLSL_					0	0	0			REV__ENSG00000255181|ENST00000542437|CCDC166	REV__ENSG00000255181|ENST00000542437|CCDC166	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2657775878906	2	473.266207	944.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.668	1	34.668	34.168	35.168	0								0	0	0	0.18645	1	12934	12934		52.937	5.2794	1		+		12590	17751	8106	8138	12783	12783					0.04338347832049294
GELSVSTDK	9	Unmodified	_GELSVSTDK_					0	0	0		PKD1L1|p.R558Dfs*10|1|0.27|ENSG00000158683|chr7:47905176-47905176|T/-|frameshift_variant;PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant;PKD1L1|p.L2298Cfs*3|1|0.47|ENSG00000158683|chr7:47821148-47821148|A/-|frameshift_variant;nc|ENSG00000158683|Q8TDX9-2|PKD1L1;PKD1L1|p.R2615Lfs*97|1|0.05|ENSG00000158683|chr7:47803328-47803329|-/TTTATCA|frameshift_variant;ENSG00000158683|ENST00000289672|PKD1L1	PKD1L1|p.R558Dfs*10|1|0.27|ENSG00000158683|chr7:47905176-47905176|T/-|frameshift_variant	PKD1L1|p.R558Dfs*10|1|0.27|ENSG00000158683|chr7:47905176-47905176|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.237548828125	2	468.237647	934.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.044	1	18.044	17.544	18.544	0								0	0	0	0.27025	1	5469	5469		40.778	1.5253	1				12591	5277	8107	8139	12784	12784					-0.009111194443221393
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.24761962890625	2	496.247492	990.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.16	1	31.16	30.66	31.66	0								0	0	0	0.10319	1	9994	9994		70.816	0	1				12592	3551	8108	8140	12785	12785					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2471008300781	2	496.247492	990.48043	-0.35667	-0.000177	-0.13243	-6.5719E-05	-0.48911	-0.00024272	496.2473863593019	31.449	0.54068	31.449	31.319	31.86	0					28	13	3	0	0	0	0.063171	1	11438	11438		90.601	0	1	1185300			12593	3551	8108	8140	12786	12786					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.247314453125	2	496.247492	990.48043	-1.198	-0.00059449	0.87051	0.00043199	-0.32745	-0.0001625	496.24776307170254	31.233	0.22079	31.233	31.132	31.352	0					12	8	2	0	0	0	0.10506	1	10325	10325		78.264	0	1	185330			12594	3551	8108	8140	12787	12787					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.24713134765625	2	496.247492	990.48043	0.73791	0.00036619	-1.3572	-0.0006735	-0.61927	-0.00030731	496.2467950974517	31.429	0.33577	31.429	31.332	31.668	0					12	7	2	0	0	0	0.070005	1	11859	11859		88.177	0	1	1340700			12595	3551	8108	8140	12788	12788					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2470703125	2	496.247492	990.48043	-0.76644	-0.00038034	0.00627	3.1115E-06	-0.76017	-0.00037723	496.24740979094	31.422	0.28881	31.422	31.364	31.653	0					9	6	2	0	0	0	0.13726	1	11852	11852		70.816	0	1	198580			12596	3551	8108	8140	12789	12789					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2477111816406	2	496.247492	990.48043	0.12552	6.2287E-05	0.1683	8.3519E-05	0.29382	0.00014581	496.247444686056	31.214	0.18379	31.214	31.135	31.319	0					8	5	2	0	0	0	0.16806	1	10723	10723		65.465	0	1	90733			12597	3551	8108	8140	12790	12790					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.24713134765625	2	496.247492	990.48043	-2.3781	-0.0011801	1.7353	0.00086113	-0.64283	-0.000319	496.24823969564574	31.236	0.30441	31.236	31.128	31.433	0					14	8	2	0	0	0	0.19952	1	10715	10715		61.691	0	1	206760			12598	3551	8108	8140	12791	12791					-0.015190667052138451
GELVALKKV	9	Unmodified	_GELVALKKV_					0	0	0		CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.81005859375	2	478.810585	955.606617	-0.030449	-1.4579E-05	-0.54165	-0.00025935	-0.5721	-0.00027393	478.81037403482014	26.747	0.13888	26.747	26.68	26.819	0					8	5	2	0	0	0	0.24095	1	8173	8173		56.721	0	1	59175			12599	457	8109	8141	12792	12792					0.12703807862374106
GELVALKKV	9	Unmodified	_GELVALKKV_					0	0	0		CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.8100891113281	2	478.810585	955.606617	-0.25699	-0.00012305	-0.43191	-0.0002068	-0.6889	-0.00032985	478.810347336428	27.007	0.21356	27.007	26.914	27.127	0					11	5	3	0	0	0	0.048471	1	9389	9389		95.815	0	1	558320			12600	457	8109	8141	12793	12793					0.12703807862374106
GELVALKKV	9	Unmodified	_GELVALKKV_					0	0	0		CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.810302734375	2	478.810585	955.606617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.02	1	27.02	26.52	27.52	0								0	0	0	0.0537	1	9741	9741		85.161	0	1				12601	457	8109	8141	12794	12794					0.12703807862374106
GELVKAIVV	9	Unmodified	_GELVKAIVV_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.296875	2	464.29731	926.580068	0.57362	0.00026633	-0.78357	-0.00036381	-0.20995	-9.7479E-05	464.2969319773433	39.507	0.1312	39.507	39.434	39.565	0					10	5	2	0	0	0	0.4966	1	15034	15034		32.812	3.6629	1	134510			12602	254	8110	8142	12795	12795					0.1138411897103424
GELVKAIVV	9	Unmodified	_GELVKAIVV_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.29681396484375	2	464.29731	926.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.236	1	39.236	38.736	39.736	0								0	0	0	0.3428	1	13198	13198		26.693	2.4902	1				12603	254	8110	8142	12796	12796					0.1138411897103424
GELVVVMCL	9	Unmodified	_GELVVVMCL_					0	0	0		ENST00000457870.5_1_2:70321210-70322104:-|nuORF	ENST00000457870.5_1_2:70321210-70322104:-|nuORF	ENST00000457870.5_1_2:70321210-70322104:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2587890625	2	481.756107	961.49766	-1.3316	-0.00064149	-4.1581	-0.0020032	-5.4897	-0.0026447	481.75265153136525	28.755	0.23612	28.755	28.621	28.857	0					19	9	3	0	0	0	0.39123	1	9315	9315		42.474	4.6629	1	524630			12604	9704	8111	8143	12797	12797					0.015371375762242678
GELYEQLLA	9	Unmodified	_GELYEQLLA_					0	0	0			REV__ANKS1B|p.T279A|1|0.2|ENSG00000185046|chr12:99779883-99779883|T/C|missense_variant	REV__ANKS1B|p.T279A|1|0.2|ENSG00000185046|chr12:99779883-99779883|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2715454101562	2	518.27149	1034.52843	1.0642	0.00055154	-0.27775	-0.00014395	0.78644	0.00040759	518.2712623428704	34.233	0.21774	34.233	34.105	34.323	0					11	5	3	0	0	0	0.20551	1	13187	13187		60.972	0.67798	1	230170	+		12605	12165	8112	8144	12798	12798					0.012543304864948368
GELYNEVKV	9	Unmodified	_GELYNEVKV_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7777099609375	2	525.776939	1049.53933	0.097983	5.1517E-05	1.3144	0.00069109	1.4124	0.0007426	525.777480280832	35.9	0.27747	35.9	35.818	36.095	0					11	7	2	0	0	0	0.079477	1	13504	13504		68.846	28.068	1	244750			12606	1831	8113	8145	12799	12799					0.016537328607682866
GELYNEVKV	9	Unmodified	_GELYNEVKV_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.777099609375	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.83	1	35.83	35.33	36.33	0								0	0	0	0.037083	1	13868	13868		85.862	18.368	1				12607	1831	8113	8145	12800	12800					0.016537328607682866
GEMAALHVPL	10	Oxidation (M)	_GEM(Oxidation (M))AALHVPL_		GEM(1)AALHVPL		GEM(74)AALHVPL	0	0	1			REV__ENSG00000137494|ENST00000533342|ANKRD42	REV__ENSG00000137494|ENST00000533342|ANKRD42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.274169921875	2	527.273509	1052.53247	0.58062	0.00030615	0.5659	0.00029839	1.1465	0.00060453	527.2734182475263	32.292	0.1186	32.292	32.207	32.325	0					7	5	2	0	0	0	0.24485	1	10427	10427		73.975	20.623	1	52486	+		12608	14923	8114	8146	12801	12801		564			0.008300967085460798
GEMDVWYNVEK	11	Unmodified	_GEMDVWYNVEK_					0	0	0		UNC13C|p.L1329V|1|0.98|ENSG00000137766|chr15:54294061-54294061|T/G|missense_variant	UNC13C|p.L1329V|1|0.98|ENSG00000137766|chr15:54294061-54294061|T/G|missense_variant	UNC13C|p.L1329V|1|0.98|ENSG00000137766|chr15:54294061-54294061|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	685.800537109375	2	685.308277	1368.602	-1.4753	-0.001011	1.3661	0.00093621	-0.10915	-7.4798E-05	685.3093462137499	15.772	0.67163	15.772	15.646	16.318	0					46	16	5	0	0	0	0.51875	1	4362	4362		42.864	0	1	17996000			12609	23089	8115	8147	12802	12802					-0.06755489133388437
GEMHRELNA	9	Unmodified	_GEMHRELNA_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM;EPCAM|p.E304A|1|0.32|ENSG00000119888|chr2:47386579-47386579|A/C|missense_variant	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7492065429688	2	528.74819	1055.48183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.819	1	18.819	18.319	19.319	0								0	0	0	0.36056	1	4750	4750		22.58	6.1065	1				12610	3144	8116	8148	12803	12803					-0.04369432616476843
GEMKGAIGL	9	Unmodified	_GEMKGAIGL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2363586425781	2	438.236396	874.458238	0.59999	0.00026294	-1.6058	-0.00070373	-1.0058	-0.00044079	438.2359741261429	32.586	0.21596	32.586	32.464	32.68	0					11	5	3	0	0	0	0.028876	1	11971	11971		110.12	10.745	1	344150			12611	951	8117	8149	12804	12804					0.015987536170200656
GEMKGAIGL	9	Unmodified	_GEMKGAIGL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.2361145019531	2	438.236396	874.458238	0.67082	0.00029398	-2.9181	-0.0012788	-2.2473	-0.00098484	438.23581043360656	32.568	0.28312	32.568	32.447	32.73	0					26	7	5	0	0	0	0.0406	1	12375	12375		98.629	26.752	1	671450			12612	951	8117	8149	12805	12805					0.015987536170200656
GEMKGAIGL	9	Unmodified	_GEMKGAIGL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.235595703125	2	438.236396	874.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.37	1	32.37	31.87	32.87	0								0	0	0	0.27939	1	11252	11252		39.253	4.0521	1				12613	951	8117	8149	12806	12806					0.015987536170200656
GEMKGAIGL	9	Unmodified	_GEMKGAIGL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2362060546875	2	438.236396	874.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.537	1	32.537	32.037	33.037	0								0	0	0	0.0095889	1	12277	12277		110.12	10.745	1				12614	951	8117	8149	12807	12807					0.015987536170200656
GEMKSGVPVL	10	Unmodified	_GEMKSGVPVL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7760009765625	2	508.775885	1015.53722	1.157	0.00058865	0.51079	0.00025988	1.6678	0.00084853	508.7760448129907	35.211	0.79177	35.211	34.924	35.716	0					59	22	4	0	0	0	0.22691	1	13605	13605		76.17	8.676	1	2071700			12615	4928	8118	8150	12808	12808					0.03006980851307617
GEMLELIIY	9	Unmodified	_GEMLELIIY_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7838134765625	2	540.785918	1079.55728	1.0393	0.00056205	-2.1893	-0.0011839	-1.15	-0.00062189	540.784724553003	24.651	0.36046	24.651	24.467	24.827	0					17	8	3	0	0	0	0.24095	1	7667	7667		31.955	15.482	1	348580	+		12616	13017	8119	8151	12809	12809					0.020687317912916114
GEMQKQAQL	9	Unmodified	_GEMQKQAQL_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7597045898438	2	516.760766	1031.50698	1.5405	0.00079605	-3.7802	-0.0019535	-2.2397	-0.0011574	516.7583547283515	22.892	0.46217	22.892	22.722	23.184	0					21	9	4	0	0	0	0.18416	1	7665	7665		63.534	2.5619	1	704580			12617	5827	8120	8152	12810	12810					-0.007513778138900307
GEMRLFIV	8	Unmodified	_GEMRLFIV_					0	0	0		ENST00000548674.5_1_12:57881816-57882819:+|nuORF	ENST00000548674.5_1_12:57881816-57882819:+|nuORF	ENST00000548674.5_1_12:57881816-57882819:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.76898193359375	2	482.767863	963.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.255	1	23.255	22.755	23.755	0								0	0	0	1.7419	1	7673	7673		38.806	10.924	1				12618	10599	8121	8153	12811	12811					0.03795319405060127
GEMTLKSAL	9	Unmodified	_GEMTLKSAL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.25439453125	2	475.254785	948.495018	-1.5603	-0.00074152	3.0121	0.0014315	1.4518	0.00068999	475.25490841181386	34.675	0.15556	34.675	34.593	34.749	0					16	7	3	0	0	0	0.063171	1	11695	11695		90.601	26.394	1	91468			12619	1193	8122	8154	12812	12812					0.018710054429334377
GEMTLKSAL	9	Unmodified	_GEMTLKSAL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.25445556640625	2	475.254785	948.495018	0.62052	0.0002949	2.6782	0.0012728	3.2987	0.0015677	475.2541773753395	34.835	0.75998	34.835	34.53	35.29	0					45	21	3	0	0	0	0.032383	1	13465	13465		106.68	37.055	1	581530			12620	1193	8122	8154	12813	12813					0.018710054429334377
GEMTLKSAL	9	Unmodified	_GEMTLKSAL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2540588378906	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.833	1	34.833	34.333	35.333	0								0	0	0	0.010168	1	13391	13391		109.48	29.766	1				12621	1193	8122	8154	12814	12814					0.018710054429334377
GEMVARGSN	9	Oxidation (M)	_GEM(Oxidation (M))VARGSN_		GEM(1)VARGSN		GEM(57)VARGSN	0	0	1		ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7140197753906	2	468.713816	935.413079	0.025929	1.2153E-05	0.21765	0.00010201	0.24358	0.00011417	468.71388886090045	28.951	1.0592	28.951	28.853	29.912	0					79	39	4	0	0	0	0.24095	1	9083	9083		56.721	56.721	1	2425900			12622	4182	8123	8155	12815	12815		170			-0.057210969161587855
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.775146484375	2	537.774928	1073.5353	0.78345	0.00042132	-0.46423	-0.00024965	0.31922	0.00017167	537.7747121392223	30.213	0.19081	30.213	30.132	30.323	0					16	6	3	0	0	0	0.36432	1	9587	9587		60.167	7.078	1	319450			12623	7298	8124	8156	12816	12816					0.001476433670404731
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7749633789062	2	537.774928	1073.5353	0.22373	0.00012032	0.076396	4.1084E-05	0.30013	0.0001614	537.7749027431803	30.523	0.3472	30.523	30.311	30.658	0					20	8	3	0	0	0	0.01554	1	11002	11002		128.35	32.314	1	2117500			12624	7298	8124	8156	12817	12817					0.001476433670404731
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7757568359375	2	537.774928	1073.5353	-0.31989	-0.00017203	1.5277	0.00082156	1.2078	0.00064953	537.7757724929596	30.284	0.22675	30.284	30.166	30.393	0					9	7	2	0	0	0	0.03057	1	9921	9921		117.71	18.331	1	208450			12625	7298	8124	8156	12818	12818					0.001476433670404731
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.775146484375	2	537.774928	1073.5353	0.017701	9.5192E-06	-0.1092	-5.8725E-05	-0.091498	-4.9206E-05	537.774288585451	30.262	0.10266	30.262	30.206	30.309	0					5	3	2	0	0	0	0.30252	1	9915	9915		66.962	4.8545	1	62914			12626	7298	8124	8156	12819	12819					0.001476433670404731
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7749633789062	2	537.774928	1073.5353	1.888	0.0010153	-1.4625	-0.00078649	0.42547	0.00022881	537.7739537018088	30.505	0.24873	30.505	30.4	30.649	0					8	5	2	0	0	0	0.087581	1	11421	11421		97.597	11.735	1	1148900			12627	7298	8124	8156	12820	12820					0.001476433670404731
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.775146484375	2	537.774928	1073.5353	0.29555	0.00015894	-0.064506	-3.469E-05	0.23104	0.00012425	537.7748922815123	30.488	0.29658	30.488	30.294	30.59	0					10	6	2	0	0	0	0.1725	1	11412	11412		82.831	15.337	1	356890			12628	7298	8124	8156	12821	12821					0.001476433670404731
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7755737304688	2	537.774928	1073.5353	-1.4373	-0.00077294	2.0153	0.0010838	0.57796	0.00031081	537.7760746032326	30.286	0.21146	30.286	30.175	30.386	0					12	5	3	0	0	0	0.055558	1	10282	10282		107.45	22.539	1	347970			12629	7298	8124	8156	12822	12822					0.001476433670404731
GENDRGVSF	9	Unmodified	_GENDRGVSF_					0	0	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7247619628906	2	490.725238	979.435923	-0.053801	-2.6402E-05	-0.23061	-0.00011317	-0.28441	-0.00013957	490.7253400913105	27.679	0.14654	27.679	27.606	27.753	0					7	4	2	0	0	0	0.22837	1	8551	8551		58.23	16.803	1	83698			12630	6368	8125	8157	12823	12823					-0.054617545270275514
GENDRGVSF	9	Unmodified	_GENDRGVSF_					0	0	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.72491455078125	2	490.725238	979.435923	-0.4979	-0.00024433	-0.25898	-0.00012709	-0.75689	-0.00037142	490.7252236626978	27.921	0.34259	27.921	27.822	28.165	0					15	8	3	0	0	0	0.22823	1	9819	9819		58.246	14.129	1	561110			12631	6368	8125	8157	12824	12824					-0.054617545270275514
GENDRGVSF	9	Unmodified	_GENDRGVSF_					0	0	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7252197265625	2	490.725238	979.435923	-0.72562	-0.00035608	0.66113	0.00032443	-0.064489	-3.1646E-05	490.72556219747236	27.939	0.44302	27.939	27.73	28.173	0					15	9	2	0	0	0	0.076532	1	10188	10188		85.862	21.655	1	576910			12632	6368	8125	8157	12825	12825					-0.054617545270275514
GENEEEAGLE	10	Unmodified	_GENEEEAGLE_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7229614257812	2	538.722558	1075.43056	-0.031028	-1.6715E-05	1.4765	0.00079545	1.4455	0.00077873	538.7234080614337	18.147	0.14923	18.147	18.082	18.232	0					8	5	2	0	0	0	0.41384	1	4686	4686		54.722	21.91	1	205160			12633	1358	8126	8158	12826	12826					-0.10413522900194039
GENFNKALV	9	Unmodified	_GENFNKALV_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2638244628906	2	496.263999	990.513445	-2.3752	-0.0011787	0.71944	0.00035703	-1.6558	-0.00082171	496.2647848640773	30.102	0.24805	30.102	30.003	30.251	0					12	6	2	0	0	0	0.16002	1	10216	10216		66.429	2.222	1	344010			12634	2617	8127	8159	12827	12827					0.017808834091511017
GENGAGKSTML	11	Unmodified	_GENGAGKSTML_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7564086914062	2	532.755681	1063.49681	0.28903	0.00015398	0.54396	0.0002898	0.83299	0.00044378	532.7561848683162	23.433	0.16738	23.433	23.329	23.496	0					8	3	3	0	0	0	0.056425	1	8087	8087		102.06	19.231	1	169040			12635	5406	8128	8160	12828	12828					-0.032399855391076926
GENKMGQLGL	10	Unmodified	_GENKMGQLGL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENST00000526625.2_1_11:62139723-62139795:+|nuORF;ENST00000405832.2_1_6:56297536-56297638:-|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7687377929688	2	523.768591	1045.52263	0.74708	0.0003913	-0.41266	-0.00021614	0.33442	0.00017516	523.7683498489508	34.659	0.20924	34.659	34.58	34.79	0					16	9	2	0	0	0	0.24329	1	11333	11333		74.165	22.83	1	367840			12636	6751	8129	8161	12829	12829					0.0016890870317638473
GENKMGQLGL	10	Unmodified	_GENKMGQLGL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENST00000526625.2_1_11:62139723-62139795:+|nuORF;ENST00000405832.2_1_6:56297536-56297638:-|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.76904296875	2	523.768591	1045.52263	0.089951	4.7114E-05	0.65457	0.00034284	0.74452	0.00038996	523.7689171535395	34.938	0.35316	34.938	34.8	35.153	0					16	9	2	0	0	0	0.13663	1	13051	13051		89.029	36.092	1	1650400			12637	6751	8129	8161	12830	12830					0.0016890870317638473
GENKMGQLGL	10	Unmodified	_GENKMGQLGL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENST00000526625.2_1_11:62139723-62139795:+|nuORF;ENST00000405832.2_1_6:56297536-56297638:-|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7684326171875	2	523.768591	1045.52263	0.38319	0.0002007	-0.33071	-0.00017322	0.052476	2.7485E-05	523.7684907809188	34.706	0.15836	34.706	34.648	34.806	0					11	7	2	0	0	0	0.03454	1	11714	11714		114.89	43.599	1	122290			12638	6751	8129	8161	12831	12831					0.0016890870317638473
GENKMGQLGL	10	Unmodified	_GENKMGQLGL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENST00000526625.2_1_11:62139723-62139795:+|nuORF;ENST00000405832.2_1_6:56297536-56297638:-|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7688598632812	2	523.768591	1045.52263	0.02834	1.4844E-05	0.090423	4.736E-05	0.11876	6.2204E-05	523.7686561001336	34.944	0.28295	34.944	34.819	35.102	0					13	8	2	0	0	0	0.0084313	1	13500	13500		150.36	73.587	1	488870			12639	6751	8129	8161	12832	12832					0.0016890870317638473
GENLKVLTV	9	Unmodified	_GENLKVLTV_					0	0	0		ENSG00000068784|ENST00000263736|SRBD1;nc|ENSG00000068784|Q8N5C6-2|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant;SRBD1|p.R441H|1|0.17|ENSG00000068784|chr2:45562740-45562740|C/T|missense_variant	ENSG00000068784|ENST00000263736|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7894287109375	2	486.78985	971.565146	0.81845	0.00039842	-1.9801	-0.0009639	-1.1617	-0.00056549	486.7891718895301	37.457	0.35808	37.457	37.252	37.61	0					20	7	4	0	0	0	0.13907	1	14610	14610		70.399	4.9332	1	2626500			12640	1426	8130	8162	12833	12833					0.078226271030303
GENLVVPEPG	10	Unmodified	_GENLVVPEPG_					0	0	0			REV__KCNA10|p.K435Efs*35|1|0.43|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant	REV__KCNA10|p.K435Efs*35|1|0.43|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7615966796875	2	505.761289	1009.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.608	1	37.608	37.108	38.108	0								0	0	0	0.38475	1	12710	12710		35.152	0.97948	1		+		12641	15165	8131	8163	12834	12834					0.0036515982667424396
GENPFATVKL	10	Unmodified	_GENPFATVKL_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;LMTK2-BAIAP2L1|1|fusion	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2939453125	2	538.292756	1074.57096	3.3672	0.0018125	-2.7383	-0.001474	0.62886	0.00033851	538.2910947117392	44.978	0.17645	44.978	44.907	45.084	0					10	7	2	0	0	0	0.38179	1	18007	18007		58.246	5.3095	1	56696			12642	978	8132	8164	12835	12835					0.036657256147236694
GENRERMC	8	Carbamidomethyl (C)	_GENRERMC(Carbamidomethyl (C))_	GENRERMC(1)		GENRERMC(52)		0	1	0		nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-4|SDK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2261352539062	2	526.224025	1050.4335	3.4587	0.0018201	0.32484	0.00017094	3.7836	0.001991	526.2242381429915	16.722	0.71163	16.722	16.515	17.226	0					44	14	4	0	0	0	0.57802	1	4697	4697		52.299	7.922	1	17381000			12643	11436	8133	8165	12836	12836	451				-0.08970249527988017
GENSPGGGG	9	Unmodified	_GENSPGGGG_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.1531982421875	2	366.151375	730.288196	1.1961	0.00043794	2.0498	0.00075055	3.2459	0.0011885	366.1529724511021	45.551	0.22977	45.551	45.484	45.714	0					21	12	2	0	0	0	0.5654	1	17606	17606		25.45	2.4077	1	105750			12644	5806	8134	8166	12837	12837					-0.08773646061013096
GENSPGGGG	9	Unmodified	_GENSPGGGG_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.1535339355469	2	366.151375	730.288196	1.0001	0.00036618	1.1026	0.00040371	2.1027	0.00076989	366.15309908654484	45.514	0.37842	45.514	45.327	45.705	0					28	14	3	0	0	0	0.5654	1	18237	18237		25.45	0	1	231730			12645	5806	8134	8166	12838	12838					-0.08773646061013096
GENVDWVEM	9	Oxidation (M)	_GENVDWVEM(Oxidation (M))_		GENVDWVEM(1)		GENVDWVEM(74)	0	0	1		ENST00000369096.8_1_6:106534297-106536103:+|nuORF	ENST00000369096.8_1_6:106534297-106536103:+|nuORF	ENST00000369096.8_1_6:106534297-106536103:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7288208007812	2	547.726589	1093.43863	3.8341	0.0021001	-0.07995	-4.3791E-05	3.7542	0.0020563	547.7267254578503	20.369	1.068	20.369	19.607	20.675	0					41	21	3	0	0	0	0.1236	1	6351	6351		73.975	11.867	1	3679500			12646	8936	8135	8167	12839	12839		352			-0.10435667184401609
GENVIISHF	9	Unmodified	_GENVIISHF_					0	0	0		ENST00000525250.5_1_11:821680-823850:+|nuORF;ENSG00000177666|ENST00000336615|PNPLA2	ENST00000525250.5_1_11:821680-823850:+|nuORF	ENST00000525250.5_1_11:821680-823850:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.26373291015625	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.33	1	40.33	39.83	40.83	0								0	0	0	0.066158	1	15889	15889		85.161	13.865	1				12647	6680	8136	8168	12840	12840					0.006768834091417375
GENVIISHF	9	Unmodified	_GENVIISHF_					0	0	0		ENST00000525250.5_1_11:821680-823850:+|nuORF;ENSG00000177666|ENST00000336615|PNPLA2	ENST00000525250.5_1_11:821680-823850:+|nuORF	ENST00000525250.5_1_11:821680-823850:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2640075683594	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.267	1	40.267	39.767	40.767	0								0	0	0	0.073134	1	15974	15974		82.75	14.266	1				12648	6680	8136	8168	12841	12841					0.006768834091417375
GENVWRCCQ	9	Unmodified	_GENVWRCCQ_					0	0	0		nc|ENSG00000141750|Q6ZMT1-2|STAC2;ENSG00000141750|ENST00000333461|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.728271484375	2	547.728943	1093.44333	1.2342	0.00067602	-1.6754	-0.00091765	-0.44113	-0.00024162	547.727968967699	20.195	0.2177	20.195	20.092	20.31	0					16	7	3	0	0	0	0.25109	1	5345	5345		55.504	20.352	1	153310			12649	4470	8137	8169	12842	12842					-0.09965061522621
GENVWRCCQ	9	Unmodified	_GENVWRCCQ_					0	0	0		nc|ENSG00000141750|Q6ZMT1-2|STAC2;ENSG00000141750|ENST00000333461|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.7291259765625	2	547.728943	1093.44333	0.46975	0.00025729	-0.6016	-0.00032951	-0.13185	-7.2217E-05	547.7287512570671	20.472	0.55729	20.472	20.142	20.699	0					27	12	4	0	0	0	0.25716	1	6370	6370		54.776	6.8168	1	894580			12650	4470	8137	8169	12843	12843					-0.09965061522621
GENVWRCCQ	9	Unmodified	_GENVWRCCQ_					0	0	0		nc|ENSG00000141750|Q6ZMT1-2|STAC2;ENSG00000141750|ENST00000333461|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.72900390625	2	547.728943	1093.44333	0.42675	0.00023374	-0.068249	-3.7382E-05	0.3585	0.00019636	547.7289294565335	19.946	0.33098	19.946	19.706	20.037	0					15	11	2	0	0	0	0.22377	1	5486	5486		58.782	19.976	1	267350			12651	4470	8137	8169	12844	12844					-0.09965061522621
GENYLPVHL	9	Unmodified	_GENYLPVHL_					0	0	0		ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.791259765625	2	521.271824	1040.5291	0.076034	3.9635E-05	-2.7885	-0.0014536	-2.7125	-0.001414	521.2701901807105	17.497	0.28102	17.497	17.415	17.696	0					11	7	3	0	0	0	0.45358	1	4917	4917		37.159	5.5248	1	243110			12652	3252	8138	8170	12845	12845					0.010451699261693648
GEPDHNEAL	9	Unmodified	_GEPDHNEAL_					0	0	0		nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF	nc|ENSG00000100038|O95985-3|TOP3B	nc|ENSG00000100038|O95985-3|TOP3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.217041015625	2	491.217246	980.419939	-0.52146	-0.00025615	0.59414	0.00029185	0.072674	3.5699E-05	491.21748396670097	21.728	0.91501	21.728	21.38	22.295	0					49	21	3	0	0	0	0.24095	1	7003	7003		56.721	14.325	1	322700			12653	1967	8139	8171	12846	12846					-0.07105460763943938
GEPDHNEAL	9	Unmodified	_GEPDHNEAL_					0	0	0		nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF	nc|ENSG00000100038|O95985-3|TOP3B	nc|ENSG00000100038|O95985-3|TOP3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2171936035156	2	491.217246	980.419939	-0.73055	-0.00035886	0.36111	0.00017739	-0.36944	-0.00018147	491.21741109484225	21.808	0.81215	21.808	21.441	22.253	0					35	16	3	0	0	0	0.35021	1	7247	7247		45.972	15.469	1	196250			12654	1967	8139	8171	12847	12847					-0.07105460763943938
GEPEKLGQAL	10	Unmodified	_GEPEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.282470703125	2	521.282389	1040.55022	0.076088	3.9663E-05	0.3374	0.00017588	0.41349	0.00021554	521.2825066983888	30.756	0.77786	30.756	30.553	31.331	0					55	18	5	0	0	0	0.30252	2	11263	11085;11263		66.962	16.82	1	4636100			12655	2930	8140	8172	12848;12849	12849					0.031571352350511006
GEPEKLGQAL	10	Unmodified	_GEPEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.2825927734375	2	521.282389	1040.55022	0.3364	0.00017536	0.34929	0.00018208	0.68569	0.00035744	521.2825232937004	30.576	0.5726	30.576	30.383	30.956	0					58	20	4	0	0	0	0.58308	1	10007	10007		36.318	2.396	1	1171000			12656	2930	8140	8172	12850	12850					0.031571352350511006
GEPFASHSL	9	Unmodified	_GEPFASHSL_					0	0	0		RBM41|p.M298Vfs*5|1|0.21|ENSG00000089682|chrX:107088470-107088471|AT/-|frameshift_variant;nc|ENSG00000089682|Q96IZ5-2|RBM41;nc|ENSG00000089682|Q96IZ5|RBM41;ENSG00000089682|ENST00000685964|RBM41	RBM41|p.M298Vfs*5|1|0.21|ENSG00000089682|chrX:107088470-107088471|AT/-|frameshift_variant	RBM41|p.M298Vfs*5|1|0.21|ENSG00000089682|chrX:107088470-107088471|AT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7267761230469	2	472.727249	943.439946	0.59072	0.00027925	-1.2221	-0.00057772	-0.63138	-0.00029847	472.72656519038327	31.66	0.33879	31.66	31.471	31.81	0					13	7	2	0	0	0	0.26904	1	11975	11975		53.351	5.4358	1	250470			12657	1819	8141	8173	12851	12851					-0.03403665033329162
GEPGCTQAQVL	11	Carbamidomethyl (C)	_GEPGC(Carbamidomethyl (C))TQAQVL_	GEPGC(1)TQAQVL		GEPGC(88)TQAQVL		0	1	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.2745361328125	2	580.274238	1158.53392	-0.033869	-1.9653E-05	1.3807	0.00080121	1.3469	0.00078155	580.2744372511294	33.332	0.8066	33.332	32.932	33.739	0					53	21	4	0	0	0	0.10641	1	12269	12269		88.134	33.411	1	412800			12658	4144	8142	8174	12852	12852	179				-0.039003139933811326
GEPGCTQAQVL	11	Carbamidomethyl (C)	_GEPGC(Carbamidomethyl (C))TQAQVL_	GEPGC(1)TQAQVL		GEPGC(78)TQAQVL		0	1	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.2740478515625	2	580.274238	1158.53392	3.2473	0.0018843	-1.1802	-0.00068486	2.0671	0.0011995	580.2723366601564	33.327	0.79172	33.327	32.892	33.684	0					44	16	4	0	0	0	0.17294	1	12623	12623		77.533	18.751	1	685160			12659	4144	8142	8174	12853	12853	179				-0.039003139933811326
GEPRGRSR	8	Unmodified	_GEPRGRSR_					0	0	0		nc|ENSG00000263465|Q9BRL6-2|SRSF8;ENSG00000263465|ENST00000587424|SRSF8	nc|ENSG00000263465|Q9BRL6-2|SRSF8	nc|ENSG00000263465|Q9BRL6-2|SRSF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7503662109375	2	457.749382	913.484211	2.4975	0.0011432	0.050548	2.3139E-05	2.5481	0.0011664	457.74939174336794	14.5	0.86563	14.5	13.978	14.844	0					40	17	4	0	0	0	0.63077	1	3507	3507		44.117	0	1	2261200			12660	8060	8143	8175	12854	12854					0.024007839035334655
GEPRIPAPI	9	Unmodified	_GEPRIPAPI_					0	0	0		ENST00000572919.1_3_17:3488830-3495572:-|nuORF	ENST00000572919.1_3_17:3488830-3495572:-|nuORF	ENST00000572919.1_3_17:3488830-3495572:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2769775390625	2	475.276909	948.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.493	1	37.493	36.993	37.993	0								0	0	0	0.28164	1	12674	12674		38.806	3.1879	1				12661	10814	8144	8176	12855	12855					0.06293777651421806
GEPTNFVHTA	10	Unmodified	_GEPTNFVHTA_					0	0	0		ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7566528320312	2	536.756538	1071.49852	2.1281	0.0011423	3.4953	0.0018761	5.6234	0.0030184	536.7557087846665	27.989	0.75625	27.989	27.378	28.135	0					39	18	3	0	0	0	0.28675	1	9829	9829		68.846	19.31	1	332910			12662	5291	8145	8177	12856	12856					-0.034366084588327794
GEPVNGRHTL	10	Unmodified	_GEPVNGRHTL_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7764282226562	2	540.283254	1078.55196	0.26939	0.00014554	-0.41851	-0.00022611	-0.14912	-8.0567E-05	540.2835796760237	19.608	0.35391	19.608	19.43	19.784	0					13	8	2	0	0	0	0.48965	1	5933	5933		46.457	2.0796	1	510260			12663	3030	8146	8178	12857	12857					0.015821890436882313
GEPVNGRHTL	10	Unmodified	_GEPVNGRHTL_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.283447265625	2	540.283254	1078.55196	0.30703	0.00016588	-0.20026	-0.0001082	0.10677	5.7683E-05	540.2834683004963	19.503	0.31161	19.503	19.347	19.659	0					13	6	3	0	0	0	0.4287	1	6190	6190		53.089	8.9722	1	308750			12664	3030	8146	8178	12858	12858					0.015821890436882313
GEPVVPILCS	10	Unmodified	_GEPVVPILCS_					0	0	0		ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2698974609375	2	507.270435	1012.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.163	1	13.163	12.663	13.663	0								0	0	0	0.4201	1	2685	2685		20.947	1.587	1				12665	7443	8147	8179	12859	12859					0.020555784770181162
GEQGITGPSGP	11	Unmodified	_GEQGITGPSGP_					0	0	0		nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	nc|ENSG00000130635|P20908-2|COL5A1	nc|ENSG00000130635|P20908-2|COL5A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2434997558594	2	500.240721	998.466889	-0.17498	-8.7534E-05	3.1062	0.0015538	2.9312	0.0014663	500.24370840048067	51.908	0.13997	51.908	51.854	51.994	0					12	7	3	0	0	0	0.64626	1	18483	18483		32.751	1.2207	1	275260			12666	3654	8148	8180	12860	12860					-0.03240601212792171
GEQILILWK	9	Unmodified	_GEQILILWK_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.2205505371094	3	367.221853	1098.64373	0.82858	0.00030427	-4.1634	-0.0015289	-3.3348	-0.0012246	367.2201631019831	17.386	0.13373	17.386	17.314	17.448	0					8	3	3	0	0	0	0.51991	1	4898	4898		30.318	9.4806	1	53663			12667	8031	8149	8181	12861	12861					0.09835479408138781
GEQKAYVLK	9	Unmodified	_GEQKAYVLK_					0	0	0		MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant;ENSG00000175471|ENST00000515393|MCTP1;nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1	MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant	MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.8656921386719	3	345.865958	1034.57605	-0.77836	-0.00026921	0.50963	0.00017627	-0.26873	-9.2943E-05	345.8660405189184	24.6	0.12845	24.6	24.526	24.655	0					8	4	2	0	0	0	0.57706	1	7554	7554		31.53	0	1	99721			12668	6560	8150	8182	12862	12862					0.06014029477319127
GEQLLKQM	8	Unmodified	_GEQLLKQM_					0	0	0		ENST00000492961.1_1_7:35271114-35293240:-|nuORF;TBX20|p.D326Mfs*40|1|0.28|ENSG00000164532|chr7:35204497-35204497|C/-|frameshift_variant;ENSG00000164532|ENST00000408931|TBX20	ENST00000492961.1_1_7:35271114-35293240:-|nuORF	ENST00000492961.1_1_7:35271114-35293240:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7552490234375	2	473.754953	945.495352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.675	1	26.675	26.175	27.175	0								0	0	0	1.7419	1	9231	9231		60.972	5.4677	1				12669	5702	8151	8183	12863	12863					0.020424251627900958
GEQPTTVKN	9	Unmodified	_GEQPTTVKN_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7525329589844	2	487.251089	972.487624	-1.2448	-0.00060653	0.53204	0.00025924	-0.71275	-0.00034729	487.25134419867135	22.313	0.67531	22.313	22.101	22.776	0					45	21	4	0	0	0	0.37197	1	6658	6658		44.117	1.2525	1	817530	+		12670	13088	8152	8184	12864	12864					0.0002798916685833319
GEQSVGKTSL	10	Unmodified	_GEQSVGKTSL_					0	0	0		ENST00000541795.1_1_11:73441692-73471680:-|nuORF;nc|ENSG00000175582|P20340-3|RAB6A;nc|ENSG00000175582|P20340-2|RAB6A;ENSG00000175582|ENST00000336083|RAB6A;ENSG00000154917|ENST00000285208|RAB6B	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2637634277344	2	503.264196	1004.51384	-0.052765	-2.6555E-05	-0.57808	-0.00029093	-0.63085	-0.00031748	503.2635786596809	22.716	0.13083	22.716	22.65	22.781	0					8	4	2	0	0	0	0.31894	1	6470	6470		65.157	0	1	98511			12671	6568	8153	8185	12865	12865					0.01176258338352909
GEQTGLLP	8	Unmodified	_GEQTGLLP_					0	0	0		ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.7187805175781	2	407.718893	813.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.492	1	28.492	27.992	28.992	0								0	0	0	1.7419	1	9195	9195		40.573	0	1				12672	8200	8154	8186	12866	12866					0.009058340807087006
GEQTQERL	8	Unmodified	_GEQTQERL_					0	0	0			REV__ENSG00000203499|ENST00000527139|IQANK1	REV__ENSG00000203499|ENST00000527139|IQANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.740234375	2	480.740888	959.467223	0.035587	1.7108E-05	-1.6564	-0.00079632	-1.6209	-0.00077922	480.7400692210983	16.468	0.16694	16.468	16.382	16.549	0					9	5	2	0	0	0	0.48092	1	3738	3738		62.107	9.1707	1	136030	+		12673	17456	8155	8187	12867	12867					-0.01413181492955573
GEQVAVKSL	9	Unmodified	_GEQVAVKSL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2666015625	2	465.766374	929.518196	-0.43872	-0.00020434	-0.44754	-0.00020845	-0.88626	-0.00041279	465.7664595793439	27.272	0.097162	27.272	27.201	27.298	0					8	4	2	0	0	0	0.47449	1	8382	8382		35.178	6.0082	1	39062			12674	5463	8156	8188	12868	12868					0.05061767551910634
GEQVAVKSL	9	Unmodified	_GEQVAVKSL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7662048339844	2	465.766374	929.518196	-0.67522	-0.00031449	-0.42104	-0.00019611	-1.0963	-0.0005106	465.7664257942086	27.538	0.21609	27.538	27.407	27.623	0					10	5	3	0	0	0	0.079477	1	9641	9641		84.817	19.352	1	373750			12675	5463	8156	8188	12869	12869					0.05061767551910634
GEQVAVKSL	9	Unmodified	_GEQVAVKSL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.76611328125	2	465.766374	929.518196	-0.86363	-0.00040225	-0.1162	-5.412E-05	-0.97982	-0.00045637	465.76657574935297	27.293	0.22268	27.293	27.196	27.418	0					12	8	2	0	0	0	0.15593	1	8676	8676		66.92	8.6903	1	202460			12676	5463	8156	8188	12870	12870					0.05061767551910634
GEQVAVKSL	9	Unmodified	_GEQVAVKSL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7661437988281	2	465.766374	929.518196	0.67139	0.00031271	-1.3995	-0.00065184	-0.72812	-0.00033913	465.76610377730793	27.515	0.41006	27.515	27.405	27.815	0					13	8	3	0	0	0	0.079477	1	9991	9991		84.817	10.652	1	1025000			12677	5463	8156	8188	12871	12871					0.05061767551910634
GEQVAVKSL	9	Unmodified	_GEQVAVKSL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7659912109375	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.533	1	27.533	27.033	28.033	0								0	0	0	0.043554	1	9865	9865		89.029	5.3818	1				12678	5463	8156	8188	12872	12872					0.05061767551910634
GEQYDQAKL	9	Unmodified	_GEQYDQAKL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2573852539062	2	526.256371	1050.49819	0.46944	0.00024705	-0.5391	-0.0002837	-0.069654	-3.6656E-05	526.2568996178591	26.549	0.19811	26.549	26.438	26.636	0					14	7	2	0	0	0	0.13109	1	8365	8365		72.243	6.4401	1	128060			12679	3404	8157	8189	12873	12873					-0.025040281787141794
GEQYDQAKL	9	Unmodified	_GEQYDQAKL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2567749023438	2	526.256371	1050.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.848	1	26.848	26.348	27.348	0								0	0	0	0.039046	1	9658	9658		91.265	21.638	1				12680	3404	8157	8189	12874	12874					-0.025040281787141794
GEQYDQAKL	9	Unmodified	_GEQYDQAKL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2568969726562	2	526.256371	1050.49819	1.1957	0.00062925	-0.24355	-0.00012817	0.95216	0.00050108	526.2560873391913	26.644	0.23643	26.644	26.467	26.704	0					7	5	2	0	0	0	0.24334	1	8624	8624		56.434	3.0823	1	85445			12681	3404	8157	8189	12875	12875					-0.025040281787141794
GEQYDQAKL	9	Unmodified	_GEQYDQAKL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2567749023438	2	526.256371	1050.49819	3.4574	0.0018195	-2.7879	-0.0014672	0.66951	0.00035233	526.255249576687	26.78	0.31489	26.78	26.57	26.885	0					12	6	2	0	0	0	0.15558	1	9494	9494		66.962	5.99	1	583020			12682	3404	8157	8189	12876	12876					-0.025040281787141794
GERCRSLLH	9	Unmodified	_GERCRSLLH_					0	0	0		ENST00000497242.1_1_X:153631168-153631932:-|nuORF;ENSG00000013563|ENST00000369807|DNASE1L1	ENST00000497242.1_1_X:153631168-153631932:-|nuORF	ENST00000497242.1_1_X:153631168-153631932:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.52197265625	3	357.522309	1069.5451	0.13221	4.7268E-05	-1.0935	-0.00039096	-0.96133	-0.0003437	357.5218942541141	23	0.16881	23	22.938	23.107	0					10	6	2	0	0	0	0.5879	1	6597	6597		30.318	7.7381	1	306030			12683	1069	8158	8190	12877	12877					0.013105528914366005
GERGTKIKDLS	11	Unmodified	_GERGTKIKDLS_					0	0	0		ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.8949279785156	3	401.894577	1202.6619	0.51619	0.00020745	0.23973	9.6347E-05	0.75592	0.0003038	401.8946939800278	16.342	0.41668	16.342	16.234	16.65	0					20	8	3	0	0	0	0.78498	1	4520	4520		11.932	0	1	686050			12684	9285	8159	8191	12878	12878					0.06867569592168365
GERLAREH	8	Unmodified	_GERLAREH_					0	0	0			REV__ENSG00000268606|ENST00000684311|MAGEA2	REV__ENSG00000268606|ENST00000684311|MAGEA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2584533691406	2	484.25704	966.499526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.71	1	35.71	35.21	36.21	0								0	0	0	1.7419	1	13412	13412		31.955	1.4512	1		+		12685	16926	8160	8192	12879	12879					0.014936507007064392
GERLCAVYL	9	Carbamidomethyl (C)	_GERLC(Carbamidomethyl (C))AVYL_	GERLC(1)AVYL		GERLC(42)AVYL		0	1	0			REV__nc|ENSG00000095539|Q9NTN9|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9|SEMA4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7811279296875	2	540.778959	1079.54336	0.99949	0.0005405	-0.80475	-0.00043519	0.19474	0.00010531	540.7783115241972	24.495	0.25544	24.495	24.361	24.616	0					11	7	2	0	0	0	0.39215	1	7215	7215		42.396	9.5837	1	235860	+		12686	13472	8161	8193	12880	12880	517				0.006774990828034788
GERLFPLSRSL	11	Unmodified	_GERLFPLSRSL_					0	0	0		ENST00000349155.6_3_12:115121244-115121814:-|nuORF	ENST00000349155.6_3_12:115121244-115121814:-|nuORF	ENST00000349155.6_3_12:115121244-115121814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.5796813964844	3	425.5787	1273.71427	0.91547	0.00038961	1.1748	0.00049996	2.0903	0.00088957	425.5793203416081	20.347	0.24512	20.347	20.29	20.535	0					10	5	3	0	0	0	0.26131	1	6308	6308		59.265	0	1	2496900			12687	8770	8162	8194	12881	12881					0.08836152725803004
GERLNQDQL	9	Unmodified	_GERLNQDQL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7734375	2	536.772719	1071.53089	1.8527	0.0009945	-0.29718	-0.00015952	1.5556	0.00083498	536.7724355822694	26.125	0.21438	26.125	26.017	26.232	0					7	4	2	0	0	0	0.067603	1	9329	9329		89.029	23.563	1	829860			12688	3989	8163	8195	12882	12882					-0.002018210558617284
GERMSCLK	8	Unmodified	_GERMSCLK_					0	0	0			REV__NTNG2|p.N294K|1|0.26|ENSG00000196358|chr9:132226873-132226873|C/A|missense_variant	REV__NTNG2|p.N294K|1|0.26|ENSG00000196358|chr9:132226873-132226873|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2271423339844	2	462.225505	922.436457	2.5667	0.0011864	0.58313	0.00026954	3.1498	0.0014559	462.2258187670204	24.004	0.26653	24.004	23.897	24.164	0					14	5	3	0	0	0	0.69548	1	8232	8232		34.173	34.173	1	570880	+		12689	21312	8164	8196	12883	12883					-0.027863744032060822
GERPFKCL	8	Unmodified	_GERPFKCL_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ZNF460|p.Y476Mfs*57|1|0.28|ENSG00000197714|chr19:57291964-57291964|C/-|frameshift_variant;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2499694824219	2	475.249837	948.485122	-0.21664	-0.00010296	-0.48362	-0.00022984	-0.70026	-0.0003328	475.2495313580405	32.778	0.29523	32.778	32.617	32.913	0					17	11	2	0	0	0	0.68754	1	10603	10603		35.201	1.6851	1	62207			12690	7490	8165	8197	12884	12884					0.008818622281978605
GERTPSPASP	10	Unmodified	_GERTPSPASP_					0	0	0			REV__ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	REV__ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.7492980957031	2	499.748713	997.482873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.885	1	14.885	14.385	15.385	0								0	0	0	0.33107	1	3137	3137		45.972	22.93	1		+		12691	15184	8166	8198	12885	12885					-0.015968949759098905
GERTQECSAF	10	Unmodified	_GERTQECSAF_					0	0	0		ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2388305664062	2	564.242938	1126.47132	0.13065	7.3721E-05	-3.6286	-0.0020474	-3.498	-0.0019737	564.2403909858872	20.404	0.41633	20.404	20.045	20.462	0					11	8	2	0	0	0	0.64162	1	6622	6622		29.17	2.374	1	123480			12692	7536	8167	8199	12886	12886					-0.08685460061542472
GERVRLLSS	9	Unmodified	_GERVRLLSS_					0	0	0			REV__PCDH8|p.L308Pfs*42|1|0.27|ENSG00000136099|chr13:52847514-52847515|-/G|frameshift_variant	REV__PCDH8|p.L308Pfs*42|1|0.27|ENSG00000136099|chr13:52847514-52847515|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.5328369140625	3	339.533091	1015.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.868	1	18.868	18.368	19.368	0								0	0	0	0.34907	1	5867	5867		19.104	0	1		+		12693	14846	8168	8200	12887	12887					0.07027663566088904
GESADAVKKA	10	Unmodified	_GESADAVKKA_					0	0	0		nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant	nc|ENSG00000114416|P51114-3|FXR1	nc|ENSG00000114416|P51114-3|FXR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2586364746094	2	488.258914	974.503274	-1.2479	-0.0006093	2.2942	0.0011202	1.0463	0.00051087	488.2594947726051	14.838	0.083716	14.838	14.778	14.862	0					5	3	2	0	0	0	0.09653	1	3283	3283		96.034	28.54	1	47360			12694	2847	8169	8201	12888	12888					0.015002756839066933
GESADAVKKA	10	Unmodified	_GESADAVKKA_					0	0	0		nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant	nc|ENSG00000114416|P51114-3|FXR1	nc|ENSG00000114416|P51114-3|FXR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2581787109375	2	488.258914	974.503274	-2.9093	-0.0014205	0.71074	0.00034703	-2.1985	-0.0010735	488.2598069542668	14.886	0.069214	14.886	14.841	14.91	0					5	3	2	0	0	0	0.27065	1	3242	3242		70.816	19.624	1	37176			12695	2847	8169	8201	12889	12889					0.015002756839066933
GESATSIPVV	10	Unmodified	_GESATSIPVV_					0	0	0			REV__MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	REV__MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.255615234375	2	480.25584	958.497126	0.93282	0.00044799	-1.5656	-0.00075187	-0.63275	-0.00030388	480.2551831718076	23.125	0.36221	23.125	22.973	23.335	0					13	7	2	0	0	0	0.42631	1	7835	7835		53.351	6.585	1	598530	+		12696	16339	8170	8202	12890	12890					0.01621757452392103
GESAVGKSSL	10	Unmodified	_GESAVGKSSL_					0	0	0		ENST00000476544.1_1_3:19992384-19992582:+|nuORF;ENST00000550013.1_1_17:40282343-40282577:-|nuORF;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7453918457031	2	467.745639	933.476725	-1.0441	-0.00048838	0.73776	0.00034508	-0.30635	-0.0001433	467.74590747779865	21.913	0.26441	21.913	21.814	22.078	0					14	8	2	0	0	0	0.023179	1	6367	6367		122.94	50.06	1	554950			12697	2549	8171	8203	12891	12891					0.007325867925828788
GESAVGKSSL	10	Unmodified	_GESAVGKSSL_					0	0	0		ENST00000476544.1_1_3:19992384-19992582:+|nuORF;ENST00000550013.1_1_17:40282343-40282577:-|nuORF;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7454833984375	2	467.745639	933.476725	0.64311	0.00030081	-1.1926	-0.00055781	-0.54944	-0.000257	467.7450974706367	22.115	0.41072	22.115	21.907	22.318	0					19	8	4	0	0	0	0.012356	1	7425	7425		133.99	55.73	1	3512100			12698	2549	8171	8203	12892	12892					0.007325867925828788
GESAVGKSSL	10	Unmodified	_GESAVGKSSL_					0	0	0		ENST00000476544.1_1_3:19992384-19992582:+|nuORF;ENST00000550013.1_1_17:40282343-40282577:-|nuORF;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7453308105469	2	467.745639	933.476725	-0.72902	-0.000341	0.16618	7.7728E-05	-0.56285	-0.00026327	467.7456808551336	21.962	0.19249	21.962	21.854	22.046	0					6	4	2	0	0	0	0.012356	1	6465	6465		133.99	55.73	1	257950			12699	2549	8171	8203	12893	12893					0.007325867925828788
GESAVGKSSL	10	Unmodified	_GESAVGKSSL_					0	0	0		ENST00000476544.1_1_3:19992384-19992582:+|nuORF;ENST00000550013.1_1_17:40282343-40282577:-|nuORF;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	ENST00000476544.1_1_3:19992384-19992582:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7455139160156	2	467.745639	933.476725	-2.186	-0.0010225	1.4651	0.0006853	-0.72092	-0.00033721	467.74633701976967	21.982	0.14549	21.982	21.888	22.033	0					8	3	3	0	0	0	0.041183	1	6477	6477		112.3	44.802	1	380500			12700	2549	8171	8203	12894	12894					0.007325867925828788
GESAVGRPP	9	Unmodified	_GESAVGRPP_					0	0	0		ENST00000464112.5_1_6:35436382-35436547:+|nuORF	ENST00000464112.5_1_6:35436382-35436547:+|nuORF	ENST00000464112.5_1_6:35436382-35436547:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2278747558594	2	435.227417	868.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.069	1	15.069	14.569	15.569	0								0	0	0	0.36609	1	3812	3812		20.947	0.4651	1				12701	9765	8172	8204	12895	12895					0.0007975468653285134
GESDPMKGV	9	Unmodified	_GESDPMKGV_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2129211425781	2	460.213117	918.411682	-0.68585	-0.00031564	-0.056987	-2.6226E-05	-0.74284	-0.00034187	460.21317399735	26.153	0.50853	26.153	25.818	26.326	0					29	11	4	0	0	0	0.07136	1	8962	8962		87.696	28.914	1	833030			12702	6845	8173	8205	12896	12896					-0.05078731004914516
GESDPMKGV	9	Unmodified	_GESDPMKGV_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.21343994140625	2	460.213117	918.411682	-0.89572	-0.00041222	0.57211	0.00026329	-0.32361	-0.00014893	460.2133004069553	25.892	0.37808	25.892	25.655	26.033	0					15	8	2	0	0	0	0.098791	1	8104	8104		79.713	20.931	1	160960			12703	6845	8173	8205	12897	12897					-0.05078731004914516
GESDPMKGV	9	Unmodified	_GESDPMKGV_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.21270751953125	2	460.213117	918.411682	-2.5668	-0.0011813	2.0327	0.00093548	-0.53406	-0.00024578	460.21397843013887	25.976	0.35434	25.976	25.767	26.121	0					11	6	2	0	0	0	0.15163	1	8269	8269		67.494	7.3754	1	165110			12704	6845	8173	8205	12898	12898					-0.05078731004914516
GESEKLVRL	9	Unmodified	_GESEKLVRL_					0	0	0		ENST00000481905.5_1_6:149919348-149924475:-|nuORF;nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1;KATNAL1|p.P379Yfs*13|1|0.23|ENSG00000102781|chr13:30227424-30227425|-/TA|frameshift_variant;ENSG00000102781|ENST00000380615|KATNAL1	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.79833984375	2	515.798206	1029.58186	1.2178	0.00062816	-0.83023	-0.00042823	0.38761	0.00019993	515.7977000472961	27.739	0.23074	27.739	27.665	27.895	0					11	5	3	0	0	0	0.048471	1	9725	9725		95.815	19.041	1	394770			12705	7151	8174	8206	12899	12899					0.06825127989009161
GESEKLVRL	9	Unmodified	_GESEKLVRL_					0	0	0		ENST00000481905.5_1_6:149919348-149924475:-|nuORF;nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1;KATNAL1|p.P379Yfs*13|1|0.23|ENSG00000102781|chr13:30227424-30227425|-/TA|frameshift_variant;ENSG00000102781|ENST00000380615|KATNAL1	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7982177734375	2	515.798206	1029.58186	0.82371	0.00042487	-0.60444	-0.00031177	0.21927	0.0001131	515.7978467316742	27.722	0.16401	27.722	27.617	27.781	0					6	3	2	0	0	0	0.0406	1	10086	10086		98.629	38.511	1	328260			12706	7151	8174	8206	12900	12900					0.06825127989009161
GESEKLVRL	9	Unmodified	_GESEKLVRL_					0	0	0		ENST00000481905.5_1_6:149919348-149924475:-|nuORF;nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1;KATNAL1|p.P379Yfs*13|1|0.23|ENSG00000102781|chr13:30227424-30227425|-/TA|frameshift_variant;ENSG00000102781|ENST00000380615|KATNAL1	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7981567382812	2	515.798206	1029.58186	0.16956	8.7457E-05	-0.107	-5.519E-05	0.062557	3.2267E-05	515.7981345755798	27.67	0.22012	27.67	27.56	27.78	0					10	4	3	0	0	0	0.01873	1	9941	9941		124.08	30.937	1	561090			12707	7151	8174	8206	12901	12901					0.06825127989009161
GESGAGKTV	9	Unmodified	_GESGAGKTV_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;MYH4|p.N981Tfs*16|1|0.12|ENSG00000264424|chr17:10453321-10453321|T/-|frameshift_variant;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F;MYH8|p.E1123Gfs*19|1|0.39|ENSG00000133020|chr17:10400757-10400758|-/C|frameshift_variant;MYH8|p.I922Nfs*6|1|0.33|ENSG00000133020|chr17:10401709-10401710|-/T|frameshift_variant;MYH7|p.I1207Tfs*26|1|0.04|ENSG00000092054|chr14:23419951-23419952|-/TGTAGTG|frameshift_variant;MYH15|p.T1279Ifs*7|1|0.04|ENSG00000144821|chr3:108421141-108421142|-/ATAA|frameshift_variant;MYH15|p.E1364Vfs*7|1|0.04|ENSG00000144821|chr3:108414346-108414347|-/GGAGTTA|frameshift_variant;MYH8|p.K1582Nfs*3|1|0.04|ENSG00000133020|chr17:10395349-10395350|-/G|frameshift_variant;ENSG00000092054|ENST00000355349|MYH7;ENSG00000133020|ENST00000403437|MYH8;MYH15|p.F777Lfs*12|1|0.26|ENSG00000144821|chr3:108454134-108454134|A/-|frameshift_variant;ENSG00000157483|ENST00000288235|MYO1E;MYH2|p.R876Gfs*9|1|0.36|ENSG00000125414|chr17:10531704-10531704|T/-|frameshift_variant;ENST00000561810.1_1_15:52708302-52718136:-|nuORF;nc|ENSG00000125414|Q9UKX2-2|MYH2;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;MYO1F|p.N396Kfs*13|1|0.44|ENSG00000142347|chr19:8548117-8548118|-/T|frameshift_variant;MYH8|p.N600Ifs*5|1|0.32|ENSG00000133020|chr17:10409377-10409377|T/-|frameshift_variant;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;MYH1|p.L229Pfs*14|1|0.19|ENSG00000109061|chr17:10513876-10513877|-/G|frameshift_variant;MYH4|p.Q222Hfs*6|1|0.02|ENSG00000264424|chr17:10463626-10463627|-/G|frameshift_variant;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000598529.5_1_19:8616563-8619410:-|nuORF;MYO5B|p.Y287Lfs*17|1|0.31|ENSG00000167306|chr18:49984806-49984807|-/A|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;ENSG00000167306|ENST00000285039|MYO5B;ENSG00000144821|ENST00000693548|MYH15;ENSG00000006788|ENST00000252172|MYH13;MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;MYH1|p.N889Mfs*24|1|0.19|ENSG00000109061|chr17:10504835-10504835|T/-|frameshift_variant;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109063|ENST00000583535|MYH3	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;ENSG00000078814|ENST00000262873|MYH7B;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;ENSG00000167306|ENST00000285039|MYO5B;ENSG00000144821|ENST00000693548|MYH15;ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000109063|ENST00000583535|MYH3	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	403.2066345214844	2	403.20615	804.397747	0.15777	6.3614E-05	1.5081	0.00060807	1.6659	0.00067169	403.20674399927685	14.391	0.13001	14.391	14.351	14.481	0					6	5	2	0	0	0	0.15163	1	3051	3051		67.494	10.773	1	53182			12708	3564;989;1609;5983;2562;7469;4642;8064;2564	8175	8207	12902	12902					-0.012276404417093545
GESGAGKTV	9	Unmodified	_GESGAGKTV_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;MYH4|p.N981Tfs*16|1|0.12|ENSG00000264424|chr17:10453321-10453321|T/-|frameshift_variant;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F;MYH8|p.E1123Gfs*19|1|0.39|ENSG00000133020|chr17:10400757-10400758|-/C|frameshift_variant;MYH8|p.I922Nfs*6|1|0.33|ENSG00000133020|chr17:10401709-10401710|-/T|frameshift_variant;MYH7|p.I1207Tfs*26|1|0.04|ENSG00000092054|chr14:23419951-23419952|-/TGTAGTG|frameshift_variant;MYH15|p.T1279Ifs*7|1|0.04|ENSG00000144821|chr3:108421141-108421142|-/ATAA|frameshift_variant;MYH15|p.E1364Vfs*7|1|0.04|ENSG00000144821|chr3:108414346-108414347|-/GGAGTTA|frameshift_variant;MYH8|p.K1582Nfs*3|1|0.04|ENSG00000133020|chr17:10395349-10395350|-/G|frameshift_variant;ENSG00000092054|ENST00000355349|MYH7;ENSG00000133020|ENST00000403437|MYH8;MYH15|p.F777Lfs*12|1|0.26|ENSG00000144821|chr3:108454134-108454134|A/-|frameshift_variant;ENSG00000157483|ENST00000288235|MYO1E;MYH2|p.R876Gfs*9|1|0.36|ENSG00000125414|chr17:10531704-10531704|T/-|frameshift_variant;ENST00000561810.1_1_15:52708302-52718136:-|nuORF;nc|ENSG00000125414|Q9UKX2-2|MYH2;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;MYO1F|p.N396Kfs*13|1|0.44|ENSG00000142347|chr19:8548117-8548118|-/T|frameshift_variant;MYH8|p.N600Ifs*5|1|0.32|ENSG00000133020|chr17:10409377-10409377|T/-|frameshift_variant;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;MYH1|p.L229Pfs*14|1|0.19|ENSG00000109061|chr17:10513876-10513877|-/G|frameshift_variant;MYH4|p.Q222Hfs*6|1|0.02|ENSG00000264424|chr17:10463626-10463627|-/G|frameshift_variant;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000598529.5_1_19:8616563-8619410:-|nuORF;MYO5B|p.Y287Lfs*17|1|0.31|ENSG00000167306|chr18:49984806-49984807|-/A|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;ENSG00000167306|ENST00000285039|MYO5B;ENSG00000144821|ENST00000693548|MYH15;ENSG00000006788|ENST00000252172|MYH13;MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;MYH1|p.N889Mfs*24|1|0.19|ENSG00000109061|chr17:10504835-10504835|T/-|frameshift_variant;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109063|ENST00000583535|MYH3	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;ENSG00000078814|ENST00000262873|MYH7B;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;ENSG00000167306|ENST00000285039|MYO5B;ENSG00000144821|ENST00000693548|MYH15;ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000109063|ENST00000583535|MYH3	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.20599365234375	2	403.20615	804.397747	-0.5892	-0.00023757	0.56169	0.00022648	-0.027511	-1.1093E-05	403.2063798675158	14.617	0.26928	14.617	14.508	14.777	0					11	5	3	0	0	0	0.028876	1	3667	3667		110.12	5.3733	1	2471500			12709	3564;989;1609;5983;2562;7469;4642;8064;2564	8175	8207	12903	12903					-0.012276404417093545
GESGAGKTV	9	Unmodified	_GESGAGKTV_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;MYH4|p.N981Tfs*16|1|0.12|ENSG00000264424|chr17:10453321-10453321|T/-|frameshift_variant;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F;MYH8|p.E1123Gfs*19|1|0.39|ENSG00000133020|chr17:10400757-10400758|-/C|frameshift_variant;MYH8|p.I922Nfs*6|1|0.33|ENSG00000133020|chr17:10401709-10401710|-/T|frameshift_variant;MYH7|p.I1207Tfs*26|1|0.04|ENSG00000092054|chr14:23419951-23419952|-/TGTAGTG|frameshift_variant;MYH15|p.T1279Ifs*7|1|0.04|ENSG00000144821|chr3:108421141-108421142|-/ATAA|frameshift_variant;MYH15|p.E1364Vfs*7|1|0.04|ENSG00000144821|chr3:108414346-108414347|-/GGAGTTA|frameshift_variant;MYH8|p.K1582Nfs*3|1|0.04|ENSG00000133020|chr17:10395349-10395350|-/G|frameshift_variant;ENSG00000092054|ENST00000355349|MYH7;ENSG00000133020|ENST00000403437|MYH8;MYH15|p.F777Lfs*12|1|0.26|ENSG00000144821|chr3:108454134-108454134|A/-|frameshift_variant;ENSG00000157483|ENST00000288235|MYO1E;MYH2|p.R876Gfs*9|1|0.36|ENSG00000125414|chr17:10531704-10531704|T/-|frameshift_variant;ENST00000561810.1_1_15:52708302-52718136:-|nuORF;nc|ENSG00000125414|Q9UKX2-2|MYH2;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;MYO1F|p.N396Kfs*13|1|0.44|ENSG00000142347|chr19:8548117-8548118|-/T|frameshift_variant;MYH8|p.N600Ifs*5|1|0.32|ENSG00000133020|chr17:10409377-10409377|T/-|frameshift_variant;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;MYH1|p.L229Pfs*14|1|0.19|ENSG00000109061|chr17:10513876-10513877|-/G|frameshift_variant;MYH4|p.Q222Hfs*6|1|0.02|ENSG00000264424|chr17:10463626-10463627|-/G|frameshift_variant;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000598529.5_1_19:8616563-8619410:-|nuORF;MYO5B|p.Y287Lfs*17|1|0.31|ENSG00000167306|chr18:49984806-49984807|-/A|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;ENSG00000167306|ENST00000285039|MYO5B;ENSG00000144821|ENST00000693548|MYH15;ENSG00000006788|ENST00000252172|MYH13;MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;MYH1|p.N889Mfs*24|1|0.19|ENSG00000109061|chr17:10504835-10504835|T/-|frameshift_variant;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109063|ENST00000583535|MYH3	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;ENSG00000078814|ENST00000262873|MYH7B;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;ENSG00000167306|ENST00000285039|MYO5B;ENSG00000144821|ENST00000693548|MYH15;ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000109063|ENST00000583535|MYH3	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.2060241699219	2	403.20615	804.397747	0.56529	0.00022793	-0.79891	-0.00032213	-0.23362	-9.4198E-05	403.2057905581359	14.6	0.22005	14.6	14.541	14.761	0					9	4	3	0	0	0	0.014688	1	3679	3679		131.03	8.8554	1	2022600			12710	3564;989;1609;5983;2562;7469;4642;8064;2564	8175	8207	12904	12904					-0.012276404417093545
GESGESSGPP	10	Unmodified	_GESGESSGPP_					0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.1898498535156	2	452.188154	902.361755	-0.021261	-9.6142E-06	2.7864	0.00126	2.7652	0.0012504	452.1894857165438	24.969	0.10992	24.969	24.889	24.999	0					5	3	2	0	0	0	0.54197	1	7453	7453		40.778	5.1599	1	59488	+		12711	13251	8176	8208	12905	12905					-0.09333142409218453
GESGHLAREC	10	Unmodified	_GESGHLAREC_					0	0	0		ENST00000502372.1_1_3:128889298-128890145:-|nuORF;nc|ENSG00000169714|P62633-7|CNBP;nc|ENSG00000169714|P62633-3|CNBP;nc|ENSG00000169714|P62633-2|CNBP;nc|ENSG00000169714|P62633-8|CNBP;nc|ENSG00000169714|P62633-5|CNBP;ENSG00000169714|ENST00000422453|CNBP;nc|ENSG00000169714|P62633-4|CNBP;nc|ENSG00000169714|P62633-6|CNBP	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7391357421875	2	529.737822	1057.46109	0.032883	1.742E-05	1.948	0.0010319	1.9809	0.0010493	529.7393109121787	17.502	0.13555	17.502	17.469	17.604	0					5	4	2	0	0	0	0.50287	1	4405	4405		45.022	12.21	1	53875			12712	6179	8177	8209	12906	12906					-0.06534022996129352
GESGIKVAVL	10	Unmodified	_GESGIKVAVL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.78961181640625	2	486.78985	971.565146	0.0058043	2.8255E-06	-0.1546	-7.5258E-05	-0.1488	-7.2432E-05	486.78963590137903	37.237	0.15489	37.237	37.155	37.31	0					15	8	2	0	0	0	0.4758	1	12194	12194		47.96	1.9873	1	71543			12713	5653	8178	8210	12907	12907					0.07822627103041668
GESGIKVAVL	10	Unmodified	_GESGIKVAVL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7893981933594	2	486.78985	971.565146	-0.31736	-0.00015449	0.40858	0.00019889	0.091222	4.4406E-05	486.7897584080956	37.543	0.41725	37.543	37.349	37.767	0					24	12	3	0	0	0	0.4287	1	14251	14251		53.089	16.642	1	482080			12714	5653	8178	8210	12908	12908					0.07822627103041668
GESGIKVAVL	10	Unmodified	_GESGIKVAVL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7894287109375	2	486.78985	971.565146	-1.2431	-0.00060513	0.39443	0.000192	-0.84866	-0.00041312	486.79016762347527	37.268	0.2808	37.268	37.147	37.428	0					37	15	4	0	0	0	0.38194	1	12633	12633		58.23	12.258	1	517660			12715	5653	8178	8210	12909	12909					0.07822627103041668
GESGIKVAVL	10	Unmodified	_GESGIKVAVL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.78955078125	2	486.78985	971.565146	0.63708	0.00031012	-1.5949	-0.0007764	-0.95786	-0.00046627	486.78926781452094	37.495	0.33137	37.495	37.328	37.659	0					34	10	4	0	0	0	0.14151	1	14706	14706		88.177	22.712	1	2923900			12716	5653	8178	8210	12910	12910					0.07822627103041668
GESGKSTIV	9	Unmodified	_GESGKSTIV_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3;ENST00000464960.5_1_20:57463863-57475007:+|nuORF;ENSG00000114349|ENST00000232461|GNAT1;nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-3|GNAI2;GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant;ENST00000493744.5_1_20:57416812-57475007:+|nuORF;ENST00000491348.5_1_20:57416812-57475007:+|nuORF;ENST00000484504.5_1_20:57464299-57475007:+|nuORF;ENST00000371098.6_1_20:57415898-57475007:+|nuORF;nc|ENSG00000134183|P19087|GNAT2;GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000141404|P38405|GNAL;nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000087258|ENST00000262493|GNAO1	nc|ENSG00000087460|Q5JWF2|GNAS;GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant;nc|ENSG00000087258|P09471-2|GNAO1	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.2347717285156	2	439.234907	876.455261	-1.0044	-0.00044119	0.47657	0.00020933	-0.52788	-0.00023186	439.2352165792287	19.911	0.10957	19.911	19.842	19.951	0					8	3	3	0	0	0	0.33044	1	5470	5470		47.657	3.5405	1	172240			12717	1768;4442;1763	8179	8211	12911	12911					0.012092017638678954
GESGKSTIV	9	Unmodified	_GESGKSTIV_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3;ENST00000464960.5_1_20:57463863-57475007:+|nuORF;ENSG00000114349|ENST00000232461|GNAT1;nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-3|GNAI2;GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant;ENST00000493744.5_1_20:57416812-57475007:+|nuORF;ENST00000491348.5_1_20:57416812-57475007:+|nuORF;ENST00000484504.5_1_20:57464299-57475007:+|nuORF;ENST00000371098.6_1_20:57415898-57475007:+|nuORF;nc|ENSG00000134183|P19087|GNAT2;GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000141404|P38405|GNAL;nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000087258|ENST00000262493|GNAO1	nc|ENSG00000087460|Q5JWF2|GNAS;GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant;nc|ENSG00000087258|P09471-2|GNAO1	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.23480224609375	2	439.234907	876.455261	0.62841	0.00027602	-1.03	-0.00045243	-0.40164	-0.00017641	439.23446753902266	20.12	0.36952	20.12	19.961	20.331	0					12	7	3	0	0	0	0.19605	1	6486	6486		62.107	17.991	1	1085100			12718	1768;4442;1763	8179	8211	12912	12912					0.012092017638678954
GESGLGKSTL	10	Unmodified	_GESGLGKSTL_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENST00000585170.1_1_17:56603011-56603617:-|nuORF;nc|ENSG00000108387|O43236-5|SEPTIN4;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENST00000477238.1_1_22:19707079-19707537:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000108387|O43236-2|SEPTIN4;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENSG00000108387|ENST00000672673|SEPTIN4	ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000577440.5_1_17:56598198-56609324:-|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7521667480469	2	474.753464	947.492375	-0.24082	-0.00011433	-0.90252	-0.00042848	-1.1433	-0.0005428	474.7530051157663	25.21	0.19257	25.21	25.11	25.303	0					7	5	2	0	0	0	0.44292	1	7554	7554		51.528	0.33506	1	110950			12719	3271;6085;6791;10840	8180	8212	12913	12913					0.01652873309626557
GESGLGKSTL	10	Unmodified	_GESGLGKSTL_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENST00000585170.1_1_17:56603011-56603617:-|nuORF;nc|ENSG00000108387|O43236-5|SEPTIN4;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENST00000477238.1_1_22:19707079-19707537:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000108387|O43236-2|SEPTIN4;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENSG00000108387|ENST00000672673|SEPTIN4	ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000577440.5_1_17:56598198-56609324:-|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.75299072265625	2	474.753464	947.492375	-0.46005	-0.00021841	-0.17501	-8.3089E-05	-0.63507	-0.0003015	474.75333830746433	25.533	0.22255	25.533	25.362	25.584	0					13	5	3	0	0	0	0.026898	1	8726	8726		120.31	45.263	1	644930			12720	3271;6085;6791;10840	8180	8212	12914	12914					0.01652873309626557
GESGLGKSTLI	11	Unmodified	_GESGLGKSTLI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1	ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.29638671875	2	531.295496	1060.57644	0.38941	0.00020689	1.1808	0.00062736	1.5702	0.00083425	531.2962499749259	33.708	0.12756	33.708	33.652	33.779	0					7	5	2	0	0	0	0.35425	1	10989	10989		47.228	8.4741	1	76189			12721	3271;6085;6791	8181	8213	12915	12915					0.0485740440653899
GESGLGKSTLI	11	Unmodified	_GESGLGKSTLI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1	ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;ENSG00000180096|ENST00000321367|SEPTIN1	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2951049804688	2	531.295496	1060.57644	0.1195	6.3491E-05	0.52994	0.00028156	0.64944	0.00034505	531.295876945841	34.007	0.27228	34.007	33.909	34.181	0					13	7	2	0	0	0	0.11526	1	12615	12615		86.189	25.217	1	334570			12722	3271;6085;6791	8181	8213	12916	12916					0.0485740440653899
GESHHTVTL	9	Unmodified	_GESHHTVTL_					0	0	0			REV__ENST00000497914.5_1_7:43919356-43945301:-|nuORF	REV__ENST00000497914.5_1_7:43919356-43945301:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.74395751953125	2	490.743431	979.472308	-0.066575	-3.2671E-05	0.80433	0.00039472	0.73775	0.00036205	490.74376741912835	24.243	0.21358	24.243	24.163	24.377	0					5	4	2	0	0	0	0.26904	1	8465	8465		53.351	0	1	117060	+		12723	19792	8182	8214	12917	12917					-0.01824877630338051
GESHVSGTTTL	11	Unmodified	_GESHVSGTTTL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.7650146484375	2	544.76456	1087.51457	1.1799	0.00064279	-0.30942	-0.00016856	0.87051	0.00047422	544.7644130025911	23	0.20065	23	22.907	23.107	0					22	7	4	0	0	0	0.035029	1	6578	6578		112.41	16.596	1	1418500			12724	3371	8183	8215	12918	12918					-0.025689470126280867
GESHVSGTTTL	11	Unmodified	_GESHVSGTTTL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7650756835938	2	544.76456	1087.51457	0.38096	0.00020753	0.41244	0.00022469	0.7934	0.00043222	544.7648218222406	23.344	0.4418	23.344	23.123	23.565	0					27	10	5	0	0	0	0.085907	1	7703	7703		93.143	8.2277	1	4942600			12725	3371	8183	8215	12919	12919					-0.025689470126280867
GESHVSGTTTL	11	Unmodified	_GESHVSGTTTL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.7659301757812	2	544.76456	1087.51457	0.49419	0.00026922	0.044233	2.4097E-05	0.53842	0.00029331	544.7646157834434	23.065	0.21594	23.065	22.971	23.187	0					22	7	4	0	0	0	0.1937	1	6857	6857		75.043	8.614	1	1137100			12726	3371	8183	8215	12920	12920					-0.025689470126280867
GESHVSGTTTL	11	Unmodified	_GESHVSGTTTL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7655029296875	2	544.76456	1087.51457	1.948	0.0010612	-1.3642	-0.00074314	0.58381	0.00031804	544.7637913553099	23.255	0.41766	23.255	23.044	23.462	0					22	8	4	0	0	0	0.0523	1	7975	7975		104.06	13.687	1	6699000			12727	3371	8183	8215	12921	12921					-0.025689470126280867
GESILKVNL	9	Unmodified	_GESILKVNL_					0	0	0		ENSG00000162174|ENST00000415229|ASRGL1;nc|ENSG00000162174|Q7L266-2|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7897644042969	2	486.78985	971.565146	-0.31627	-0.00015396	0.39236	0.000191	0.076091	3.7041E-05	486.7899353460304	42.429	0.14975	42.429	42.337	42.486	0					17	8	3	0	0	0	0.01873	1	16060	16060		124.08	39.165	1	112780			12728	5445	8184	8216	12922	12922					0.07822627103041668
GESILKVNL	9	Unmodified	_GESILKVNL_					0	0	0		ENSG00000162174|ENST00000415229|ASRGL1;nc|ENSG00000162174|Q7L266-2|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	ENSG00000162174|ENST00000415229|ASRGL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7889404296875	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.306	1	42.306	41.806	42.806	0								0	0	0	0.18645	1	16875	16875		52.937	3.4952	1				12729	5445	8184	8216	12923	12923					0.07822627103041668
GESKFQQKL	9	Unmodified	_GESKFQQKL_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.79052734375	2	532.790381	1063.56621	0.13005	6.929E-05	-0.11517	-6.1362E-05	0.014881	7.9284E-06	532.7903777496634	22.069	0.14765	22.069	22.017	22.165	0					7	3	3	0	0	0	0.07136	1	7120	7120		87.696	29.467	1	429300			12730	4346	8185	8217	12924	12924					0.036968414719467546
GESKGPMR	8	Unmodified	_GESKGPMR_					0	0	0			REV__nc|ENSG00000172264|A1Z1Q3|MACROD2	REV__nc|ENSG00000172264|A1Z1Q3|MACROD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.21588134765625	2	431.215995	860.417436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.947	1	17.947	17.447	18.447	0								0	0	0	1.7419	1	5159	5159		29.15	3.6994	1		+		12731	16455	8186	8218	12925	12925					-0.018355877026010603
GESKSPKTL	9	Unmodified	_GESKSPKTL_					0	0	0			REV__ENST00000359426.6_1_10:71128346-71129014:+|nuORF	REV__ENST00000359426.6_1_10:71128346-71129014:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7637634277344	2	473.763832	945.513111	0.60318	0.00028577	-1.4318	-0.00067835	-0.82865	-0.00039258	473.7632114179619	35.575	0.22554	35.575	35.49	35.716	0					13	6	3	0	0	0	0.39215	1	13804	13804		42.396	1.618	1	288980	+		12732	18548	8187	8219	12926	12926					0.03817463689279066
GESLHGYRI	9	Unmodified	_GESLHGYRI_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.266845703125	2	516.267073	1030.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.677	1	40.677	40.177	41.177	0								0	0	0	0.28996	1	15511	15511		37.159	3.6435	1				12733	3140	8188	8220	12927	12927					0.005554016406676965
GESLKLKVV	9	Unmodified	_GESLKLKVV_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.80767822265625	2	486.808042	971.601532	0.70232	0.0003419	-1.6274	-0.00079222	-0.92506	-0.00045033	486.80727760767843	30.131	0.12844	30.131	30.05	30.178	0					6	3	2	0	0	0	0.11898	1	10829	10829		75.043	25.602	1	254320			12734	4527	8189	8221	12928	12928					0.11459503999753906
GESLQVPQLA	10	Unmodified	_GESLQVPQLA_					0	0	0			REV__PIK3R3|p.G399Efs*84|1|0.05|ENSG00000117461|chr1:46043863-46043864|-/TGTT|frameshift_variant	REV__PIK3R3|p.G399Efs*84|1|0.05|ENSG00000117461|chr1:46043863-46043864|-/TGTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2825927734375	2	521.282389	1040.55022	0.75482	0.00039347	-0.13605	-7.092E-05	0.61877	0.00032255	521.2822865441669	30.526	0.58261	30.526	30.344	30.927	0					61	23	3	0	0	0	0.68774	1	9687	9687		23.523	0.94304	1	678630	+		12735	21374	8190	8222	12929	12929					0.031571352350511006
GESQNYYR	8	Unmodified	_GESQNYYR_					0	0	0			REV__nc|ENSG00000206341|P01893|HLA-H	REV__nc|ENSG00000206341|P01893|HLA-H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.226806640625	2	508.725238	1015.43592	-0.39629	-0.0002016	1.7733	0.00090211	1.377	0.00070051	508.72549381181767	11.855	0.1099	11.855	11.785	11.895	0					5	3	2	0	0	0	0.79567	1	2519	2519		17.365	0.66	1	112250	+		12736	21198	8191	8223	12930	12930					-0.07117754527052966
GESQPVKMF	9	Unmodified	_GESQPVKMF_					0	0	0		CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7519226074219	2	511.75241	1021.49027	-0.1364	-6.9804E-05	0.25344	0.0001297	0.11704	5.9897E-05	511.75227920532876	33.56	0.20414	33.56	33.454	33.658	0					11	7	2	0	0	0	0.28897	1	10932	10932		51.193	5.2407	1	68982			12737	4438;562	8192	8224	12931	12931					-0.01961878699830777
GESQPVKMF	9	Unmodified	_GESQPVKMF_					0	0	0		CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7525329589844	2	511.75241	1021.49027	0.00057003	2.9172E-07	0.50704	0.00025948	0.50761	0.00025977	511.7525990920689	33.804	0.19085	33.804	33.768	33.959	0					8	5	2	0	0	0	0.13267	1	12540	12540		71.877	13.096	1	461700			12738	4438;562	8192	8224	12932	12932					-0.01961878699830777
GESQTLQQF	9	Unmodified	_GESQTLQQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2489013671875	2	519.248546	1036.48254	0.059302	3.0792E-05	0.49301	0.000256	0.55232	0.00028679	519.2491264396251	37.001	0.21197	37.001	36.93	37.142	0					11	6	2	0	0	0	0.023928	1	14004	14004		115.49	21.488	1	134630			12739	7486	8193	8225	12933	12933					-0.03424314695780595
GESQTLQQF	9	Unmodified	_GESQTLQQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2494506835938	2	519.248546	1036.48254	-1.374	-0.00071345	1.2495	0.00064881	-0.1245	-6.4645E-05	519.2495484760176	36.791	0.072723	36.791	36.741	36.813	0					5	3	2	0	0	0	0.078509	1	13178	13178		85.161	29.657	1	42508			12740	7486	8193	8225	12934	12934					-0.03424314695780595
GESQVKDNTF	10	Unmodified	_GESQVKDNTF_					0	0	0		ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.76513671875	2	562.76456	1123.51457	1.4397	0.0008102	-0.44029	-0.00024778	0.99938	0.00056242	562.7641497221309	23.83	0.075201	23.83	23.782	23.857	0					5	3	2	0	0	0	0.45669	1	6955	6955		50.034	2.3762	1	43701			12741	7910	8194	8226	12935	12935					-0.04224947012630764
GESQVKDNTF	10	Unmodified	_GESQVKDNTF_					0	0	0		ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7650756835938	2	562.76456	1123.51457	1.7847	0.0010044	-0.73271	-0.00041234	1.052	0.00059204	562.7638267258344	24.135	0.13596	24.135	24.052	24.188	0					6	3	2	0	0	0	0.50287	1	8100	8100		45.022	4.244	1	211130			12742	7910	8194	8226	12936	12936					-0.04224947012630764
GESRIQIL	8	Unmodified	_GESRIQIL_					0	0	0			REV__ENST00000559051.1_1_15:65411613-65412071:-|nuORF	REV__ENST00000559051.1_1_15:65411613-65412071:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2689208984375	2	458.266542	914.51853	-0.43994	-0.00020161	-0.17645	-8.086E-05	-0.61639	-0.00028247	458.2665268363758	31.578	0.51044	31.578	31.275	31.786	0					24	10	4	0	0	0	0.7126	1	11713	11713		31.955	1.4512	1	1803100	+		12743	20276	8195	8227	12937	12937					0.05785187271760606
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2561340332031	2	496.256371	990.498189	-0.060897	-3.022E-05	-0.21657	-0.00010747	-0.27746	-0.00013769	496.2561998063049	21.986	0.28473	21.986	21.906	22.19	0					18	8	3	0	0	0	0.01242	1	6136	6136		112.11	47.9	1	1151000			12744	6489	8196	8228	12938	12938					0.0025597182128649365
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2557067871094	2	496.256371	990.498189	-0.35422	-0.00017579	-0.1184	-5.8755E-05	-0.47262	-0.00023454	496.25625541745904	22.331	0.36489	22.331	22.197	22.561	0					24	8	5	0	0	0	0.05301	1	7224	7224		106.88	42.673	1	5915200			12745	6489	8196	8228	12939	12939					0.0025597182128649365
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2561340332031	2	496.256371	990.498189	-1.1937	-0.0005924	0.72768	0.00036111	-0.46607	-0.00023129	496.25676056301927	22.04	0.34708	22.04	21.889	22.236	0					26	11	4	0	0	0	0.18814	1	6402	6402		78.264	23.487	1	873650			12746	6489	8196	8228	12940	12940					0.0025597182128649365
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.25640869140625	2	496.256371	990.498189	-1.451	-0.00072007	2.2766	0.0011298	0.82558	0.0004097	496.2574941072075	22.015	0.16209	22.015	21.939	22.101	0					7	5	2	0	0	0	0.58114	1	6413	6413		31.634	0	1	92096			12747	6489	8196	8228	12941	12941					0.0025597182128649365
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2560729980469	2	496.256371	990.498189	0.74157	0.00036801	-1.7349	-0.00086094	-0.9933	-0.00049293	496.25534666182386	22.213	0.65985	22.213	21.858	22.518	0					25	13	3	0	0	0	0.081397	1	7494	7494		86.882	0	1	5108600			12748	6489	8196	8228	12942	12942					0.0025597182128649365
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2567138671875	2	496.256371	990.498189	-0.76616	-0.00038021	1.1732	0.0005822	0.40703	0.00020199	496.25678344188066	22.242	0.31248	22.242	22.037	22.35	0					12	6	3	0	0	0	0.01313	1	7491	7491		131.62	25.201	1	594730			12749	6489	8196	8228	12943	12943					0.0025597182128649365
GESSKEKK	8	Unmodified	_GESSKEKK_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;DDX46|p.K197Sfs*4|1|0.12|ENSG00000145833|chr5:134773834-134773834|A/-|frameshift_variant;DDX46|p.T361Rfs*7|1|0.04|ENSG00000145833|chr5:134782978-134782979|-/AAGATTAACAAAC|frameshift_variant;DDX46|p.T418Qfs*23|1|0.17|ENSG00000145833|chr5:134784448-134784448|A/-|frameshift_variant	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.73980712890625	2	446.740357	891.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.743	1	16.743	16.243	17.243	0								0	0	0	1.7419	1	4032	4032		27.882	1.1893	1				12750	4695	8197	8229	12944	12944					0.016086041381413452
GESSLIKQL	9	Unmodified	_GESSLIKQL_					0	0	0		nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.77899169921875	2	487.779482	973.544411	-2.9102	-0.0014195	2.3615	0.0011519	-0.54869	-0.00026764	487.78056317646207	35.927	0.12837	35.927	35.851	35.98	0					7	5	2	0	0	0	0.22837	1	12834	12834		58.23	8.1964	1	58144			12751	221	8198	8230	12945	12945					0.056580367233777906
GESSLILKA	9	Unmodified	_GESSLILKA_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.268798828125	2	459.26875	916.522947	-0.66504	-0.00030543	0.56844	0.00026107	-0.096604	-4.4367E-05	459.2687780041841	33.144	0.21368	33.144	33.046	33.26	0					11	6	2	0	0	0	0.1424	1	12237	12237		69.628	14.851	1	354720			12752	4336	8199	8231	12946	12946					0.061346516946514384
GESSLRNFTM	10	Unmodified	_GESSLRNFTM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.269287109375	2	571.268955	1140.52336	2.0071	0.0011466	-0.98588	-0.0005632	1.0212	0.00058338	571.2691350393543	36.863	0.32381	36.863	36.771	37.095	0					32	10	4	0	0	0	0.21577	1	14377	14377		77.533	20.812	1	905990			12753	5040	8200	8232	12947	12947					-0.04128296647809293
GESSLRNFTM	10	Unmodified	_GESSLRNFTM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.77001953125	2	571.268955	1140.52336	0.62215	0.00035541	-0.31869	-0.00018206	0.30346	0.00017336	571.7698982389974	36.674	0.13367	36.674	36.597	36.731	0					10	6	2	0	0	0	0.31894	1	13119	13119		65.157	12.221	1	89736			12754	5040	8200	8232	12948	12948					-0.04128296647809293
GESSLRNFTM	10	Unmodified	_GESSLRNFTM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.2705688476562	2	571.268955	1140.52336	-1.3905	-0.00079438	4.1078	0.0023466	2.7172	0.0015523	571.27181134544	36.687	0.202	36.687	36.592	36.794	0					14	9	2	0	0	0	0.536	1	13117	13117		41.427	4.9799	1	57297			12755	5040	8200	8232	12949	12949					-0.04128296647809293
GESSLRNFTM	10	Unmodified	_GESSLRNFTM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2692260742188	2	571.268955	1140.52336	1.6348	0.00093391	-1.7793	-0.0010164	-0.14448	-8.2539E-05	571.2684693150421	36.822	0.50656	36.822	36.664	37.171	0					27	10	4	0	0	0	0.28855	1	14328	14328		68.626	13.849	1	1327000			12756	5040	8200	8232	12950	12950					-0.04128296647809293
GESSLRNFTM	10	Unmodified	_GESSLRNFTM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2692260742188	2	571.268955	1140.52336	3.4025	0.0019438	-1.1277	-0.0006442	2.2749	0.0012996	571.2694902239464	36.823	0.50652	36.823	36.647	37.154	0					26	10	4	0	0	0	0.27406	1	14348	14348		70.399	20.863	1	797900			12757	5040	8200	8232	12951	12951					-0.04128296647809293
GESTFKMIL	9	Unmodified	_GESTFKMIL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2711791992188	2	513.270435	1024.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.522	1	45.522	45.022	46.022	0								0	0	0	0.29356	1	17601	17601		36.447	5.9431	1				12758	4928	8201	8233	12952	12952					0.015035784770361715
GESTSELIK	9	Unmodified	_GESTSELIK_					0	0	0		ENST00000470408.5_1_7:157015856-157060446:+|nuORF	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2530517578125	2	482.253297	962.492041	-0.45084	-0.00021742	-0.24393	-0.00011764	-0.69477	-0.00033505	482.25319787255336	31.249	0.22325	31.249	31.148	31.371	0					10	8	2	0	0	0	0.35021	1	10334	10334		45.972	3.108	1	107490			12759	9840	8202	8234	12953	12953					0.009294535897765854
GESVKFQL	8	Unmodified	_GESVKFQL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2475891113281	2	454.247818	906.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.163	1	38.163	37.663	38.663	0								0	0	0	1.7419	1	14962	14962		54.776	10.66	1				12760	1024	8203	8235	12954	12954					0.024100960061332444
GESVKFQL	8	Unmodified	_GESVKFQL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2475280761719	2	454.247818	906.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.128	1	38.128	37.628	38.628	0								0	0	0	1.7419	1	14965	14965		74.255	15.473	1				12761	1024	8203	8235	12955	12955					0.024100960061332444
GESVLKLTF	9	Unmodified	_GESVLKLTF_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2839050292969	2	497.2844	992.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.033	1	47.033	46.533	47.533	0								0	0	0	0.24544	1	18013	18013		44.377	0.26039	1				12762	2404	8204	8236	12956	12956					0.057672247287428036
GESVTKLTL	9	Unmodified	_GESVTKLTL_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000480701.1_1_1:117641440-117644143:+|nuORF;ENST00000492682.5_1_1:117640837-117644143:+|nuORF	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.27398681640625	2	474.274032	946.533512	0.60867	0.00028867	-0.23749	-0.00011264	0.37118	0.00017604	474.2737478312098	35.387	0.40753	35.387	35.136	35.544	0					23	11	4	0	0	0	0.13726	1	13717	13717		70.816	9.8443	1	698720			12763	3007	8205	8237	12957	12957					0.058106343490862855
GESVTKLTL	9	Unmodified	_GESVTKLTL_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000480701.1_1_1:117641440-117644143:+|nuORF;ENST00000492682.5_1_1:117640837-117644143:+|nuORF	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2734680175781	2	474.274032	946.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.166	1	35.166	34.666	35.666	0								0	0	0	0.16453	1	12508	12508		56.434	5.2411	1				12764	3007	8205	8237	12958	12958					0.058106343490862855
GESVVKVSVVA	11	Unmodified	_GESVVKVSVVA_					0	0	0			REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.544677734375	3	358.544885	1072.61282	1.4316	0.0005133	-3.5166	-0.0012608	-2.0849	-0.00074755	358.54327711656134	27.063	0.51158	27.063	26.961	27.473	0					18	10	4	0	0	0	0.38061	1	9778	9778		53.597	5.6373	1	602690	+		12765	19713	8206	8238	12959	12959					0.07942281303257914
GETEANNHKKL	11	Unmodified	_GETEANNHKKL_					0	0	0		ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	ENSG00000126261|ENST00000246548|UBA2	ENSG00000126261|ENST00000246548|UBA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	620.8192749023438	2	620.817658	1239.62076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.004	1	14.004	13.504	14.504	0								0	0	0	0.45674	1	2895	2895		18.262	12.341	1				12766	3470	8207	8239	12960	12960					0.010538085527059593
GETEKLYQL	9	Unmodified	_GETEKLYQL_					0	0	0		nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1;ENST00000522804.5_1_8:87497076-87500839:-|nuORF;RMDN1|p.N157Kfs*2|1|0.46|ENSG00000176623|chr8:86486508-86486509|-/T|frameshift_variant;nc|ENSG00000176623|Q96DB5-3|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7825927734375	2	540.782222	1079.54989	-1.4817	-0.00080128	2.5531	0.0013807	1.0714	0.0005794	540.7833080594852	36.101	0.098278	36.101	36.06	36.158	0					6	3	2	0	0	0	0.38666	1	12911	12911		42.864	2.2917	1	60074			12767	6615	8208	8240	12961	12961					0.013297155151803963
GETESKRAL	9	Unmodified	_GETESKRAL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.76495361328125	2	495.764363	989.514173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.118	1	16.118	15.618	16.618	0								0	0	0	0.099216	1	4544	4544		71.877	11.759	1				12768	7449	8209	8241	12962	12962					0.01899678058180143
GETESKRAL	9	Unmodified	_GETESKRAL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7640686035156	2	495.764363	989.514173	0.10521	5.2161E-05	-0.070868	-3.5134E-05	0.034346	1.7028E-05	495.7643287761005	15.903	0.055772	15.903	15.869	15.925	0					4	2	2	0	0	0	0.41113	1	3658	3658		40.778	0.71999	1	50861			12769	7449	8209	8241	12963	12963					0.01899678058180143
GETESKRAL	9	Unmodified	_GETESKRAL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7642517089844	2	495.764363	989.514173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.132	1	16.132	15.632	16.632	0								0	0	0	0.029117	1	4404	4404		96.19	13.885	1				12770	7449	8209	8241	12964	12964					0.01899678058180143
GETGLGKSTL	10	Unmodified	_GETGLGKSTL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7611083984375	2	481.761289	961.508025	0.08062	3.8839E-05	-0.65332	-0.00031474	-0.5727	-0.0002759	481.76099686852757	25.706	0.16588	25.706	25.578	25.744	0					10	5	3	0	0	0	0.31894	1	7752	7752		65.157	0	1	313800			12771	3411	8210	8242	12965	12965					0.025731598266816036
GETGLGKSTL	10	Unmodified	_GETGLGKSTL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7610778808594	2	481.761289	961.508025	0.68937	0.00033211	-1.165	-0.00056123	-0.47559	-0.00022912	481.7607667756472	25.975	0.39624	25.975	25.738	26.134	0					15	6	3	0	0	0	0.01518	1	9253	9253		128.6	0	1	1729400			12772	3411	8210	8242	12966	12966					0.025731598266816036
GETGLGKSTL	10	Unmodified	_GETGLGKSTL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.76153564453125	2	481.761289	961.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.788	1	25.788	25.288	26.288	0								0	0	0	0.10198	1	8250	8250		79.489	0	1				12773	3411	8210	8242	12967	12967					0.025731598266816036
GETGLGKSTL	10	Unmodified	_GETGLGKSTL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7610778808594	2	481.761289	961.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.948	1	25.948	25.448	26.448	0								0	0	0	0.015119	1	9106	9106		128.6	0	1				12774	3411	8210	8242	12968	12968					0.025731598266816036
GETHVAVPAT	10	Unmodified	_GETHVAVPAT_					0	0	0		ENST00000393539.6_1_16:71495855-71496077:-|nuORF	ENST00000393539.6_1_16:71495855-71496077:-|nuORF	ENST00000393539.6_1_16:71495855-71496077:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.29534912109375	2	491.253631	980.49271	-0.72973	-0.00035848	0.57571	0.00028282	-0.15403	-7.5666E-05	491.2538655701818	25.871	0.2458	25.871	25.721	25.967	0					6	3	2	0	0	0	0.49411	1	9180	9180		45.972	3.5761	1	239080			12775	9158	8211	8243	12969	12969					0.0016829302946916869
GETKAKVLL	9	Unmodified	_GETKAKVLL_					0	0	0		ENST00000413059.1_1_X:57419910-57420861:-|nuORF;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1	ENST00000413059.1_1_X:57419910-57420861:-|nuORF	ENST00000413059.1_1_X:57419910-57420861:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7999267578125	2	479.800217	957.585882	-0.11302	-5.4227E-05	-0.35683	-0.00017121	-0.46985	-0.00022543	479.7999574992219	23.522	0.21665	23.522	23.412	23.629	0					6	4	2	0	0	0	0.048471	1	8126	8126		95.815	13.575	1	350600			12776	2058	8212	8244	12970	12970					0.1053921748269886
GETKAVETR	9	Unmodified	_GETKAVETR_					0	0	0			REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.76385498046875	2	495.764363	989.514173	0.94433	0.00046817	-2.5392	-0.0012588	-1.5948	-0.00079066	495.7632520054195	16.089	0.31938	16.089	15.88	16.2	0					11	6	2	0	0	0	0.1115	1	4396	4396		76.774	4.8967	1	586640	+		12777	21977	8213	8245	12971	12971					0.018996780581915118
GETKIEPVEL	10	Unmodified	_GETKIEPVEL_					0	0	0			REV__ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant	REV__ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.2060241699219	3	372.204528	1113.59175	0.89113	0.00033168	3.216	0.001197	4.1071	0.0015287	372.20568460195403	14.94	0.21844	14.94	14.878	15.096	0					10	4	4	0	0	0	0.52707	1	4022	4022		31.634	0	1	538800	+		12778	15352	8214	8246	12972	12972					0.039502712037119636
GETKMVETAL	10	Unmodified	_GETKMVETAL_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7764282226562	2	539.776082	1077.53761	0.26013	0.00014041	0.078515	4.238E-05	0.33865	0.00018279	539.7763233437515	32.176	0.21589	32.176	32.087	32.303	0					11	5	3	0	0	0	0.28675	1	11795	11795		68.846	4.6389	1	356880			12779	3789	8215	8247	12973	12973					0.001943557804906959
GETKMVETAL	10	Unmodified	_GETKMVETAL_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7772216796875	2	539.776082	1077.53761	-0.071831	-3.8773E-05	1.5337	0.00082784	1.4618	0.00078907	539.7772228279639	31.958	0.35881	31.958	31.762	32.121	0					27	14	4	0	0	0	0.10583	1	10616	10616		94.409	46.45	1	391070			12780	3789	8215	8247	12974	12974					0.001943557804906959
GETKMVETAL	10	Unmodified	_GETKMVETAL_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.77734375	2	539.776082	1077.53761	1.9565	0.0010561	-0.64046	-0.0003457	1.316	0.00071035	539.775853511899	32.165	0.57767	32.165	31.795	32.372	0					18	12	2	0	0	0	0.13663	1	12176	12176		89.029	24.822	1	1899400			12781	3789	8215	8247	12975	12975					0.001943557804906959
GETKMVETAL	10	Unmodified	_GETKMVETAL_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7764282226562	2	539.776082	1077.53761	2.0854	0.0011256	-1.2459	-0.0006725	0.8395	0.00045314	539.7754564548424	32.111	0.81587	32.111	31.454	32.27	0					19	16	2	0	0	0	0.16075	1	12085	12085		84.817	20.61	1	1450000			12782	3789	8215	8247	12976	12976					0.001943557804906959
GETKMVETAL	10	Unmodified	_GETKMVETAL_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7764282226562	2	539.776082	1077.53761	3.4424	0.0018581	-2.6728	-0.0014427	0.76959	0.00041541	539.7747818700965	32.145	0.46909	32.145	31.835	32.304	0					13	9	2	0	0	0	0.0087281	1	12076	12076		148.69	59.661	1	2174100			12783	3789	8215	8247	12977	12977					0.001943557804906959
GETKSIVEL	9	Unmodified	_GETKSIVEL_					0	0	0		BNC2|p.P330Lfs*7|1|0.75|ENSG00000173068|chr9:16437205-16437205|G/-|frameshift_variant;BNC2|p.P606Rfs*7|2|0.28|ENSG00000173068|chr9:16436377-16436377|G/-|frameshift_variant;nc|ENSG00000173068|Q6ZN30-2|BNC2;ENSG00000169594|ENST00000345382|BNC1;ENSG00000173068|ENST00000380672|BNC2	BNC2|p.P330Lfs*7|1|0.75|ENSG00000173068|chr9:16437205-16437205|G/-|frameshift_variant	BNC2|p.P330Lfs*7|1|0.75|ENSG00000173068|chr9:16437205-16437205|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2712707519531	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.905	1	32.905	32.405	33.405	0								0	0	0	0.040851	1	12545	12545		90.37	5.209	1				12784	308	8216	8248	12978	12978					0.0401433048649551
GETLPAYLI	9	Unmodified	_GETLPAYLI_					0	0	0			REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7687072753906	2	488.771126	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.617	1	28.617	28.117	29.117	0								0	0	0	0.23445	1	9522	9522		47.916	5.5195	1		+		12785	12544	8217	8249	12979	12979					0.038955358374209936
GETNSLIKK	9	Unmodified	_GETNSLIKK_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2847900390625	2	495.284931	988.55531	-1.2384	-0.00061337	0.54281	0.00026884	-0.6956	-0.00034452	495.285319463223	24.317	0.13316	24.317	24.249	24.382	0					11	4	3	0	0	0	0.13267	1	7432	7432		71.877	5.4482	1	314630			12786	4165	8218	8250	12980	12980					0.06057439097673978
GETPIHKA	8	Unmodified	_GETPIHKA_					0	0	0		ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10;ENST00000489973.6_1_13:111546697-111563006:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	ENST00000460846.1_1_13:111557570-111567134:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.7321472167969	2	426.732335	851.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.294	1	15.294	14.794	15.794	0								0	0	0	1.7419	1	4153	4153		45.952	12.436	1				12787	1779	8219	8251	12981	12981					0.01844942691889173
GETQKTISL	9	Unmodified	_GETQKTISL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.76910400390625	2	488.769114	975.523675	0.78667	0.0003845	-0.71464	-0.0003493	0.072027	3.5205E-05	488.7687070389363	28.699	0.26819	28.699	28.641	28.909	0					9	5	2	0	0	0	0.032383	1	10441	10441		106.68	26.97	1	1065100			12788	2727	8220	8252	12982	12982					0.034934463437252816
GETSTDLKL	9	Unmodified	_GETSTDLKL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2529296875	2	482.253297	962.492041	-0.10624	-5.1237E-05	-0.16837	-8.1197E-05	-0.27462	-0.00013243	482.2531694864952	31.473	0.25333	31.473	31.359	31.613	0					15	6	3	0	0	0	0.028876	1	11474	11474		110.12	8.5192	1	603460			12789	4594	8221	8253	12983	12983					0.009294535897652167
GETSTDLKL	9	Unmodified	_GETSTDLKL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.25311279296875	2	482.253297	962.492041	-0.56161	-0.00027084	0.21798	0.00010512	-0.34362	-0.00016571	482.25338370156715	31.463	0.38641	31.463	31.364	31.75	0					14	8	3	0	0	0	0.07136	1	11853	11853		87.696	20.203	1	493430			12790	4594	8221	8253	12984	12984					0.009294535897652167
GETSTDLKL	9	Unmodified	_GETSTDLKL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2530517578125	2	482.253297	962.492041	2.3839	0.0011497	-2.4503	-0.0011816	-0.066313	-3.1979E-05	482.25203947143734	31.444	0.36445	31.444	31.336	31.701	0					15	7	4	0	0	0	0.36892	1	11771	11771		44.377	1.9027	1	584570			12791	4594	8221	8253	12985	12985					0.009294535897652167
GETSTVEKL	9	Unmodified	_GETSTVEKL_					0	0	0		NFKBIB|p.E300*|1|0.38|ENSG00000104825|chr19:38907586-38907587|-/A|frameshift_variant;ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	NFKBIB|p.E300*|1|0.38|ENSG00000104825|chr19:38907586-38907587|-/A|frameshift_variant	NFKBIB|p.E300*|1|0.38|ENSG00000104825|chr19:38907586-38907587|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2523498535156	2	482.253297	962.492041	-0.10233	-4.9349E-05	-2.372	-0.0011439	-2.4743	-0.0011932	482.2519563113562	25.37	0.49158	25.37	25.132	25.624	0					19	11	2	0	0	0	0.012231	1	8648	8648		136.27	12.279	1	818400			12792	2309	8222	8254	12986	12986					0.009294535897652167
GETSTVEKL	9	Unmodified	_GETSTVEKL_					0	0	0		NFKBIB|p.E300*|1|0.38|ENSG00000104825|chr19:38907586-38907587|-/A|frameshift_variant;ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	NFKBIB|p.E300*|1|0.38|ENSG00000104825|chr19:38907586-38907587|-/A|frameshift_variant	NFKBIB|p.E300*|1|0.38|ENSG00000104825|chr19:38907586-38907587|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.25299072265625	2	482.253297	962.492041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.186	1	25.186	24.686	25.686	0								0	0	0	0.13425	1	7970	7970		63.534	12.341	1				12793	2309	8222	8254	12987	12987					0.009294535897652167
GETWHAARL	9	Unmodified	_GETWHAARL_					0	0	0			REV__FJX1|p.H423Afs*6|1|0.56|ENSG00000179431|chr11:35619899-35619900|-/A|frameshift_variant	REV__FJX1|p.H423Afs*6|1|0.56|ENSG00000179431|chr11:35619899-35619900|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.5126647949219	3	347.513919	1039.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.193	1	15.193	14.693	15.693	0								0	0	0	0.27025	1	3871	3871		40.778	4.4605	1		+		12794	16776	8223	8255	12988	12988					0.0017482136051967245
GEVAEQQALI	10	Unmodified	_GEVAEQQALI_					0	0	0			REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2802734375	2	529.279846	1056.54514	0.11203	5.9297E-05	0.52784	0.00027937	0.63987	0.00033867	529.2801973144226	32.106	0.49641	32.106	31.928	32.424	0					24	12	3	0	0	0	0.2978	1	11758	11758		67.494	5.7291	1	165140	+	+	12795	12560	8224	8256	12989	12989					0.019128313724195323
GEVAFACLL	9	Unmodified	_GEVAFACLL_					0	0	0			REV__ENST00000395756.5_1_17:17715494-17715812:-|nuORF	REV__ENST00000395756.5_1_17:17715494-17715812:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.74029541015625	2	461.738771	921.462989	-0.18852	-8.7048E-05	4.2796	0.001976	4.091	0.001889	461.7405753744966	24.076	0.17983	24.076	23.958	24.138	0					8	4	3	0	0	0	0.30268	1	7465	7465		50.025	7.5501	1	136890	+		12796	18883	8225	8257	12990	12990					-0.0008836224021706585
GEVCIKGTNVF	11	Carbamidomethyl (C)	_GEVC(Carbamidomethyl (C))IKGTNVF_	GEVC(1)IKGTNVF		GEVC(65)IKGTNVF		0	1	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.3076782226562	2	612.308081	1222.60161	-0.83316	-0.00051015	0.91635	0.00056109	0.08319	5.0938E-05	612.3085963791498	37.855	0.12904	37.855	37.782	37.911	0					8	4	3	0	0	0	0.27635	1	14378	14378		65.278	32.527	1	153080			12797	7431	8226	8258	12991	12991	316				-0.0007886406256147893
GEVCIKGTNVF	11	Carbamidomethyl (C)	_GEVC(Carbamidomethyl (C))IKGTNVF_	GEVC(1)IKGTNVF		GEVC(64)IKGTNVF		0	1	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.3078002929688	2	612.308081	1222.60161	0.93441	0.00057214	-1.3902	-0.00085123	-0.4558	-0.00027909	612.3068362149855	37.838	0.27162	37.838	37.747	38.018	0					24	9	4	0	0	0	0.29048	1	14817	14817		63.694	29.772	1	392220			12798	7431	8226	8258	12992	12992	316				-0.0007886406256147893
GEVDDKFLE	9	Unmodified	_GEVDDKFLE_					0	0	0			REV__CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant	REV__CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2512817382812	2	526.250754	1050.48696	1.766	0.00092937	0.074264	3.9081E-05	1.8403	0.00096845	526.2507094933798	31.559	0.81632	31.559	31.426	32.242	0					38	17	4	0	0	0	0.12239	1	11884	11884		74.255	0	1	4380700	+		12799	12454	8227	8259	12993	12993					-0.03626850272848969
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2605285644531	2	464.260925	926.507297	0.089856	4.1717E-05	-0.54048	-0.00025092	-0.45062	-0.00020921	464.2606303398815	32.72	0.34436	32.72	32.604	32.949	0					37	13	4	0	0	0	0.048471	1	10579	10579		95.815	31.608	1	1070300			12800	1939	8228	8260	12994	12994					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2606201171875	2	464.260925	926.507297	-0.69389	-0.00032215	0.57602	0.00026742	-0.11787	-5.4724E-05	464.26108454404	32.979	0.26523	32.979	32.854	33.119	0					19	7	4	0	0	0	0.27249	1	12147	12147		52.937	1.6012	1	401900			12801	1939	8228	8260	12995	12995					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.26043701171875	2	464.260925	926.507297	-0.73872	-0.00034296	0.073477	3.4113E-05	-0.66525	-0.00030885	464.26089513067865	32.77	0.44484	32.77	32.632	33.077	0					42	17	4	0	0	0	0.07136	1	10935	10935		87.696	10.922	1	1559900			12802	1939	8228	8260	12996	12996					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.260498046875	2	464.260925	926.507297	0.6913	0.00032094	-1.234	-0.00057288	-0.54265	-0.00025193	464.2602998687977	32.969	0.60894	32.969	32.793	33.402	0					38	14	4	0	0	0	0.035062	1	12563	12563		104.06	5.4274	1	9418800			12803	1939	8228	8260	12997	12997					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.26055908203125	2	464.260925	926.507297	-0.15682	-7.2806E-05	-0.29066	-0.00013494	-0.44748	-0.00020775	464.2606245650395	32.746	0.19934	32.746	32.639	32.838	0					10	5	3	0	0	0	0.22837	1	11424	11424		58.23	14.113	1	181520			12804	1939	8228	8260	12998	12998					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2605895996094	2	464.260925	926.507297	-0.43269	-0.00020088	-0.058533	-2.7174E-05	-0.49123	-0.00022806	464.2608265265555	32.754	0.38129	32.754	32.63	33.012	0					28	10	3	0	0	0	0.10915	1	11402	11402		77.318	0.54344	1	1059200			12805	1939	8228	8260	12999	12999					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2606506347656	2	464.260925	926.507297	-0.48357	-0.0002245	-0.078492	-3.6441E-05	-0.56207	-0.00026095	464.2609278885148	32.934	0.39593	32.934	32.771	33.167	0					15	8	3	0	0	0	0.048471	1	12472	12472		95.815	2.6197	1	879280			12806	1939	8228	8260	13000	13000					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2607421875	2	464.260925	926.507297	0.72565	0.00033689	-1.0292	-0.00047783	-0.30357	-0.00014094	464.2603967624415	32.946	0.59412	32.946	32.754	33.348	0					27	12	4	0	0	0	0.035062	1	12463	12463		104.06	29.802	1	6478800			12807	1939	8228	8260	13001	13001					0.04110365177609765
GEVDTSLVLS	10	Unmodified	_GEVDTSLVLS_					0	0	0		ENST00000580005.1_1_17:56357276-56358041:-|nuORF;MPO|p.R302Afs*132|1|0.16|ENSG00000005381|chr17:58278127-58278127|G/-|frameshift_variant;ENSG00000005381|ENST00000225275|MPO;nc|ENSG00000005381|P05164-3|MPO	ENST00000580005.1_1_17:56357276-56358041:-|nuORF	ENST00000580005.1_1_17:56357276-56358041:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2674865722656	2	510.266404	1018.51826	0.28181	0.0001438	1.3377	0.00068261	1.6196	0.00082641	510.2669870710932	22.984	0.18242	22.984	22.911	23.094	0					9	4	3	0	0	0	0.49411	1	6939	6939		45.972	4.5456	1	147590			12808	961	8229	8261	13002	13002					0.009737227612504284
GEVDTSLVLS	10	Unmodified	_GEVDTSLVLS_					0	0	0		ENST00000580005.1_1_17:56357276-56358041:-|nuORF;MPO|p.R302Afs*132|1|0.16|ENSG00000005381|chr17:58278127-58278127|G/-|frameshift_variant;ENSG00000005381|ENST00000225275|MPO;nc|ENSG00000005381|P05164-3|MPO	ENST00000580005.1_1_17:56357276-56358041:-|nuORF	ENST00000580005.1_1_17:56357276-56358041:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2668151855469	2	510.266404	1018.51826	1.3697	0.00069893	-0.52872	-0.00026979	0.84101	0.00042914	510.2661973328337	23.111	0.41243	23.111	23.022	23.435	0					21	8	3	0	0	0	0.37692	1	7786	7786		58.782	2.0609	1	1575800			12809	961	8229	8261	13003	13003					0.009737227612504284
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.7774658203125	2	563.772385	1125.53022	1.2455	0.00070217	0.18018	0.00010158	1.4257	0.00080376	563.7724785123033	30.397	0.24938	30.397	30.251	30.501	0					22	9	4	0	0	0	0.14893	1	9659	9659		86.882	29.07	1	535900			12810	3889;5220	8230	8262	13004	13004					-0.027526604955710354
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7758178710938	2	563.772385	1125.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.627	1	30.627	30.127	31.127	0								0	0	0	2.3527E-05	1	11062	11062		157.34	77.632	1				12811	3889;5220	8230	8262	13005	13005					-0.027526604955710354
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.7734985351562	2	563.772385	1125.53022	0.13321	7.5101E-05	1.0369	0.00058457	1.1701	0.00065967	563.7730195795689	30.449	0.43644	30.449	30.346	30.782	0					21	15	2	0	0	0	0.071575	1	9982	9982		102.06	52.526	1	636700			12812	3889;5220	8230	8262	13006	13006					-0.027526604955710354
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7726440429688	2	563.772385	1125.53022	1.8807	0.0010603	-0.95572	-0.00053881	0.92494	0.00052146	563.7718731589749	30.641	0.69118	30.641	30.496	31.188	0					31	15	3	0	0	0	1.2834E-11	1	11484	11484		223.32	134.68	1	3104600			12813	3889;5220	8230	8262	13007	13007					-0.027526604955710354
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7737426757812	2	563.772385	1125.53022	0.11221	6.3262E-05	0.45887	0.0002587	0.57108	0.00032196	563.7728623330873	30.672	0.14482	30.672	30.58	30.725	0					8	3	3	0	0	0	0.11826	1	11477	11477		92.239	32.121	1	231090			12814	3889;5220	8230	8262	13008	13008					-0.027526604955710354
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.7731323242188	2	563.772385	1125.53022	-1.0406	-0.00058668	2.2746	0.0012824	1.234	0.00069569	563.7736496031781	30.428	0.44552	30.428	30.318	30.764	0					22	11	3	0	0	0	0.0071914	1	10366	10366		157.34	66.975	1	811180			12815	3889;5220	8230	8262	13009	13009					-0.027526604955710354
GEVEKYQQL	9	Unmodified	_GEVEKYQQL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.2798461914062	2	547.279846	1092.54514	1.2239	0.00066982	-0.74359	-0.00040695	0.48031	0.00026287	547.2790574890914	28.186	0.16538	28.186	28.108	28.273	0					10	5	2	0	0	0	0.16806	1	8769	8769		65.465	12.529	1	191210			12816	7683	8231	8263	13010	13010					0.002568313724395921
GEVEKYQQL	9	Unmodified	_GEVEKYQQL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2802124023438	2	547.279846	1092.54514	0.45554	0.00024931	1.2089	0.00066163	1.6645	0.00091094	547.280751601943	28.467	0.44954	28.467	28.358	28.807	0					23	11	3	0	0	0	0.010494	1	10056	10056		139.97	32.963	1	777660			12817	7683	8231	8263	13011	13011					0.002568313724395921
GEVEKYQQL	9	Unmodified	_GEVEKYQQL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.2794189453125	2	547.279846	1092.54514	0.44345	0.00024269	2.2557	0.0012345	2.6992	0.0014772	547.2817274065534	28.21	0.34884	28.21	28.15	28.499	0					21	12	3	0	0	0	0.24334	1	9064	9064		56.434	8.4743	1	181960			12818	7683	8231	8263	13012	13012					0.002568313724395921
GEVEKYQQL	9	Unmodified	_GEVEKYQQL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2802734375	2	547.279846	1092.54514	1.8299	0.0010015	-0.22264	-0.00012185	1.6073	0.00087962	547.2794468553067	28.473	0.41329	28.473	28.365	28.778	0					14	8	4	0	0	0	0.016683	1	10448	10448		127.46	37.092	1	1236800			12819	7683	8231	8263	13013	13013					0.002568313724395921
GEVEKYQQL	9	Unmodified	_GEVEKYQQL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2800903320312	2	547.279846	1092.54514	0.34168	0.00018699	0.059039	3.2311E-05	0.40072	0.0002193	547.2799517896862	28.492	0.11694	28.492	28.399	28.515	0					4	2	2	0	0	0	0.44593	1	10442	10442		37.812	1.3648	1	56275			12820	7683	8231	8263	13014	13014					0.002568313724395921
GEVHLWIGY	9	Unmodified	_GEVHLWIGY_					0	0	0			REV__nc|ENSG00000179889|Q6P996-3|PDXDC1	REV__nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.5186462402344	3	358.51867	1072.53418	0.44483	0.00015948	-0.6309	-0.00022619	-0.18608	-6.6712E-05	358.51850301072494	19.571	0.089573	19.571	19.525	19.614	0					4	2	2	0	0	0	0.55379	1	5097	5097		26.693	4.733	1	233030	+		12821	16792	8232	8264	13015	13015					0.0008147378880494216
GEVISYQQL	9	Unmodified	_GEVISYQQL_					0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7702026367188	2	518.769114	1035.52368	1.5954	0.00082764	-0.38802	-0.00020129	1.2074	0.00062635	518.7689635050363	43.469	0.18349	43.469	43.397	43.58	0					14	9	2	0	0	0	0.12834	2	17000	16992;17000		72.879	12.38	1	62079			12822	6235	8233	8265	13016;13017	13017					0.007334463437246086
GEVKVKDAL	9	Unmodified	_GEVKVKDAL_					0	0	0			REV__ENST00000496613.5_1_7:140302290-140305578:-|nuORF	REV__ENST00000496613.5_1_7:140302290-140305578:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.78155517578125	2	479.782025	957.549496	-0.20506	-9.8382E-05	-0.75358	-0.00036156	-0.95864	-0.00045994	479.7817061508819	35.862	0.54634	35.862	35.664	36.211	0					41	14	5	0	0	0	0.10915	1	13453	13453		77.318	4.4383	1	4217900	+		12823	19775	8234	8266	13018	13018					0.06902340585986622
GEVKVTKL	8	Unmodified	_GEVKVTKL_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2744445800781	2	437.273835	872.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.077	1	22.077	21.577	22.577	0								0	0	0	1.7419	1	7115	7115		44.377	1.981	1				12824	1705	8235	8267	13019	13019					0.0917525941989652
GEVLASALSA	10	Unmodified	_GEVLASALSA_					0	0	0			REV__ENSG00000168497|ENST00000304141|CAVIN2	REV__ENSG00000168497|ENST00000304141|CAVIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.25048828125	2	459.250557	916.486562	0.072858	3.346E-05	-0.5122	-0.00023523	-0.43935	-0.00020177	459.2502600621164	23.505	0.29546	23.505	23.406	23.702	0					28	10	4	0	0	0	0.46215	1	6798	6798		49.442	3.4693	1	1648400	+		12825	16263	8236	8268	13020	13020					0.024977747979392007
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7627868652344	2	436.763635	871.512717	-0.27729	-0.00012111	-0.37288	-0.00016286	-0.65016	-0.00028397	436.76349528971184	32.747	0.14293	32.747	32.664	32.807	0					10	5	2	0	0	0	0.28444	1	10590	10590		87.696	23.489	1	97234			12826	177	8237	8269	13021	13021					0.071820887600893
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.76373291015625	2	436.763635	871.512717	-0.40586	-0.00017726	0.20461	8.9367E-05	-0.20125	-8.7898E-05	436.76366015793394	33.016	0.25033	33.016	32.932	33.182	0					16	7	3	0	0	0	0.42778	1	12166	12166		67.494	16.301	1	595310			12827	177	8237	8269	13022	13022					0.071820887600893
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7633056640625	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.776	1	32.776	32.276	33.276	0								0	0	0	1.7419	1	10958	10958		60.118	3.3972	1				12828	177	8237	8269	13023	13023					0.071820887600893
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.763671875	2	436.763635	871.512717	0.75773	0.00033095	-1.1477	-0.00050128	-0.38998	-0.00017033	436.7631335643102	32.978	0.23403	32.978	32.875	33.109	0					7	5	2	0	0	0	0.34592	1	12609	12609		77.318	10.888	1	582040			12829	177	8237	8269	13024	13024					0.071820887600893
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.76348876953125	2	436.763635	871.512717	-3.0552	-0.0013344	2.6645	0.0011637	-0.39072	-0.00017065	436.7647396295976	32.786	0.20523	32.786	32.683	32.889	0					7	5	2	0	0	0	0.42778	1	11429	11429		67.494	12.717	1	102200			12830	177	8237	8269	13025	13025					0.071820887600893
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.76348876953125	2	436.763635	871.512717	2.6682	0.0011654	-2.6901	-0.0011749	-0.021812	-9.5265E-06	436.76232141369593	32.949	0.20607	32.949	32.84	33.046	0					9	4	3	0	0	0	0.34592	1	12483	12483		77.318	5.4401	1	906240			12831	177	8237	8269	13026	13026					0.071820887600893
GEVLRTNQF	9	Unmodified	_GEVLRTNQF_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2791137695312	2	532.28018	1062.54581	-0.29654	-0.00015784	-2.9153	-0.0015517	-3.2118	-0.0017096	532.2783415746135	31.278	0.15256	31.278	31.225	31.378	0					13	6	3	0	0	0	0.34452	1	10344	10344		46.457	2.0796	1	185970			12832	3455	8238	8270	13027	13027					0.01703670812139535
GEVLRTNQF	9	Unmodified	_GEVLRTNQF_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.279296875	2	532.28018	1062.54581	1.7187	0.00091482	-0.17983	-9.572E-05	1.5388	0.0008191	532.2772742563402	31.373	0.59071	31.373	31.077	31.668	0					33	13	4	0	0	0	0.082776	1	11883	11883		83.647	16.153	1	1051900			12833	3455	8238	8270	13028	13028					0.01703670812139535
GEVLRTNQF	9	Unmodified	_GEVLRTNQF_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2806396484375	2	532.28018	1062.54581	-1.2652	-0.00067346	-1.1292	-0.00060106	-2.3944	-0.0012745	532.2792146384876	31.29	0.29324	31.29	31.222	31.516	0					11	7	2	0	0	0	0.34452	1	10747	10747		46.457	11.305	1	71279			12834	3455	8238	8270	13029	13029					0.01703670812139535
GEVNGKIVD	9	Unmodified	_GEVNGKIVD_					0	0	0		tr|U7SLQ0|U7SLQ0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rphPE=3SV=1	tr|U7SLQ0|U7SLQ0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rphPE=3SV=1	tr|U7SLQ0|U7SLQ0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rphPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7491149902344	2	465.748182	929.481811	-0.49397	-0.00023007	-0.075542	-3.5183E-05	-0.56951	-0.00026525	465.748123623404	37.527	0.21	37.527	37.417	37.627	0					7	4	2	0	0	0	0.33044	1	14670	14670		47.657	5.1829	1	84842			12835	22644	8239	8271	13030	13030					0.014248906551983964
GEVPGAAVLE	10	Unmodified	_GEVPGAAVLE_					0	0	0		ENST00000472364.1_1_21:47976931-47978452:+|nuORF;ENST00000481883.1_1_21:47977314-47978452:+|nuORF	ENST00000472364.1_1_21:47976931-47978452:+|nuORF	ENST00000472364.1_1_21:47976931-47978452:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.25048828125	2	471.250557	940.486562	0.17303	8.1539E-05	-0.72952	-0.00034379	-0.5565	-0.00026225	471.24990639354735	38.239	0.16192	38.239	38.133	38.295	0					9	6	2	0	0	0	0.54197	1	14518	14518		40.778	0	1	80445			12836	9863	8240	8272	13031	13031					0.013937747979412052
GEVPKVPVTF	10	Unmodified	_GEVPKVPVTF_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.809326171875	2	536.8055	1071.59645	2.1186	0.0011373	3.2994	0.0017711	5.418	0.0029084	536.8083606457201	28.595	0.37149	28.595	28.447	28.818	0					26	9	4	0	0	0	0.58189	1	10137	10137		36.447	0	1	930980			12837	7363	8241	8273	13032	13032					0.06351200137123669
GEVQVWRI	8	Unmodified	_GEVQVWRI_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7747497558594	2	493.774534	985.534515	0.88073	0.00043488	-0.67717	-0.00033437	0.20356	0.00010051	493.7740780677425	42.221	0.21311	42.221	42.17	42.383	0					8	5	2	0	0	0	0.61925	1	16851	16851		45.972	16.823	1	103880			12838	3517	8242	8274	13033	13033					0.041168935086489
GEVQVWRI	8	Unmodified	_GEVQVWRI_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7745666503906	2	493.774534	985.534515	2.7793	0.0013724	-2.2887	-0.0011301	0.49062	0.00024226	493.772924254212	42.255	0.21341	42.255	42.159	42.372	0					9	5	2	0	0	0	0.41	1	16861	16861		69.628	25.25	1	109720			12839	3517	8242	8274	13034	13034					0.041168935086489
GEVRAPFT	8	Unmodified	_GEVRAPFT_					0	0	0		ENST00000605386.1_1_12:90103555-90103792:+|nuORF	ENST00000605386.1_1_12:90103555-90103792:+|nuORF	ENST00000605386.1_1_12:90103555-90103792:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.7315673828125	2	438.732335	875.450116	-0.28137	-0.00012345	-0.36755	-0.00016126	-0.64892	-0.0002847	438.73217173046544	26.493	0.33759	26.493	26.32	26.658	0					18	11	2	0	0	0	0.60719	1	8045	8045		47.916	7.343	1	94774			12840	11072	8243	8275	13035	13035					0.007409426918911777
GEVSHPRKT	9	Unmodified	_GEVSHPRKT_					0	0	0		ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.77252197265625	2	505.772522	1009.53049	1.0703	0.00054131	-1.2223	-0.00061823	-0.15208	-7.6918E-05	505.7719134084482	12.099	0.13273	12.099	12.018	12.151	0					7	3	3	0	0	0	0.31937	1	2633	2633		48.602	10.79	1	217050			12841	4657	8244	8276	13036	13036					0.026108040149551925
GEVSHPRKT	9	Unmodified	_GEVSHPRKT_					0	0	0		ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7724914550781	2	505.772522	1009.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.038	1	12.038	11.538	12.538	0								0	0	0	0.26578	1	2468	2468		41.427	14.734	1				12842	4657	8244	8276	13037	13037					0.026108040149551925
GEVTIRNTK	9	Unmodified	_GEVTIRNTK_					0	0	0		nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-2|OSBPL6	nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.28814697265625	2	509.288005	1016.56146	1.1686	0.00059515	-1.5391	-0.00078384	-0.37051	-0.0001887	509.28712215332456	15.377	0.55727	15.377	14.927	15.484	0					22	11	4	0	0	0	0.30841	1	4228	4228		42.396	0	1	963710			12843	1613	8245	8277	13038	13038					0.05383957329183886
GEVVKELSV	9	Unmodified	_GEVVKELSV_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.27423095703125	2	480.274032	958.533512	-0.18192	-8.7372E-05	0.0812	3.8998E-05	-0.10072	-4.8374E-05	480.2740882091458	33.996	0.52698	33.996	33.768	34.295	0					36	14	4	0	0	0	0.13726	1	12574	12574		70.816	6.6089	1	1904700			12844	1248	8246	8278	13039	13039					0.05258634349104341
GEVVKELSV	9	Unmodified	_GEVVKELSV_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.273681640625	2	480.274032	958.533512	0.67464	0.00032401	-0.44555	-0.00021398	0.22909	0.00011003	480.2735549433529	34.004	1.1781	34.004	33.479	34.657	0					70	29	5	0	0	0	0.076532	1	12978	12978		85.862	11.607	1	12479000			12845	1248	8246	8278	13040	13040					0.05258634349104341
GEVVKELSV	9	Unmodified	_GEVVKELSV_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.27374267578125	2	480.274032	958.533512	0.93076	0.00044702	-1.1042	-0.00053031	-0.17342	-8.3288E-05	480.27341295632556	33.948	0.80559	33.948	33.732	34.538	0					50	17	5	0	0	0	0.017421	1	12896	12896		126.24	38.546	1	11500000			12846	1248	8246	8278	13041	13041					0.05258634349104341
GEVVKELSV	9	Unmodified	_GEVVKELSV_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.27484130859375	2	480.274032	958.533512	2.318	0.0011133	-2.4021	-0.0011537	-0.084098	-4.039E-05	480.2726400361066	33.981	1.0082	33.981	33.466	34.474	0					41	21	4	0	0	0	0.037712	1	12878	12878		101.46	21.747	1	9296600			12847	1248	8246	8278	13042	13042					0.05258634349104341
GEVVTGHLKE	10	Unmodified	_GEVVTGHLKE_					0	0	0			REV__nc|ENSG00000100320|O43251-9|RBFOX2	REV__nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.787841796875	2	534.787838	1067.56112	0.16407	8.7744E-05	0.010769	5.7591E-06	0.17484	9.3503E-05	534.7879720959112	22.968	0.13256	22.968	22.896	23.029	0					9	4	3	0	0	0	0.55603	1	6852	6852		39.253	6.4404	1	103930	+		12848	20956	8247	8279	13043	13043					0.03004537609331237
GEVVTVRV	8	Unmodified	_GEVVTVRV_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.7557067871094	2	429.75581	857.497067	0.80679	0.00034672	-0.51291	-0.00022043	0.29389	0.0001263	429.7555896456543	31.255	0.17402	31.255	31.169	31.343	0					6	4	2	0	0	0	0.62915	1	11392	11392		44.377	5.1244	1	132380			12849	6922	8248	8280	13044	13044					0.06261802243034253
GEVVTVRV	8	Unmodified	_GEVVTVRV_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.75567626953125	2	429.75581	857.497067	-0.4413	-0.00018965	-0.13785	-5.9241E-05	-0.57915	-0.00024889	429.755822009674	31.182	0.1152	31.182	31.126	31.241	0					4	2	2	0	0	0	0.50061	1	11646	11646		60.118	14.146	1	88778			12850	6922	8248	8280	13045	13045					0.06261802243034253
GEVYKCQSC	9	Unmodified	_GEVYKCQSC_					0	0	0		tr|U7SMB4|U7SMB4_FUSNUMetallothioneinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01889PE=4SV=1	tr|U7SMB4|U7SMB4_FUSNUMetallothioneinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01889PE=4SV=1	tr|U7SMB4|U7SMB4_FUSNUMetallothioneinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01889PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7142639160156	2	508.712427	1015.4103	2.9914	0.0015217	-0.53658	-0.00027296	2.4548	0.0012488	508.7126933464465	17.268	0.2051	17.268	17.158	17.363	0					11	4	4	0	0	0	0.37197	1	4959	4959		44.117	6.9577	1	2012400			12851	22661	8249	8281	13046	13046					-0.09678688365329435
GEWAAAQSPSA	11	Unmodified	_GEWAAAQSPSA_					0	0	0			REV__ENST00000515332.5_1_4:108746149-108816471:+|nuORF	REV__ENST00000515332.5_1_4:108746149-108816471:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7461547851562	2	537.74617	1073.47779	1.4219	0.00076461	-0.31267	-0.00016814	1.1092	0.00059647	537.7459152282595	28.645	0.093803	28.645	28.6	28.694	0					7	4	2	0	0	0	0.48922	1	8966	8966		45.022	3.5956	1	120470	+		12852	19910	8250	8282	13047	13047					-0.05601198838508026
GEWGDQCKCR	10	Unmodified	_GEWGDQCKCR_					0	0	0			REV__VWA2|p.R739Q|1|0.5|ENSG00000165816|chr10:114290333-114290333|G/A|missense_variant	REV__VWA2|p.R739Q|1|0.5|ENSG00000165816|chr10:114290333-114290333|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	591.24609375	2	591.244957	1180.47536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.283	1	18.283	17.783	18.783	0								0	0	0	0.4201	1	4740	4740		19.997	2.6318	1		+		12853	22282	8251	8283	13048	13048					-0.10765693839471169
GEYAVHVL	8	Unmodified	_GEYAVHVL_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.23443603515625	2	444.23471	886.454868	0.58765	0.00026105	-1.0374	-0.00046086	-0.44977	-0.0001998	444.23417017676337	35.534	0.26552	35.534	35.457	35.722	0					10	7	2	0	0	0	0.25916	1	13345	13345		96.048	0	1	103930			12854	7403	8252	8284	13049	13049					0.007098268346567238
GEYAVHVL	8	Unmodified	_GEYAVHVL_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2334899902344	2	444.23471	886.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.326	1	35.326	34.826	35.826	0								0	0	0	1.7419	1	11948	11948		44.531	0	1				12855	7403	8252	8284	13050	13050					0.007098268346567238
GEYAVHVL	8	Unmodified	_GEYAVHVL_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2340087890625	2	444.23471	886.454868	0.5384	0.00023918	-0.93197	-0.00041401	-0.39357	-0.00017484	444.23435577764195	35.525	0.2262	35.525	35.422	35.648	0					10	6	2	0	0	0	0.25916	1	13791	13791		96.048	0	1	133960			12856	7403	8252	8284	13051	13051					0.007098268346567238
GEYEFFLLPWT	11	Unmodified	_GEYEFFLLPWT_					0	0	0			REV__nc|ENSG00000084734|Q14397|GCKR	REV__nc|ENSG00000084734|Q14397|GCKR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.896484375	3	467.895695	1400.66525	0.59386	0.00027786	0.83948	0.00039279	1.4333	0.00067065	467.89606603567603	16.491	0.50738	16.491	16.384	16.891	0					27	10	4	0	0	0	0.80429	1	4566	4566		23.378	10.42	1	1400900	+		12857	13352	8253	8285	13052	13052					-0.01905180353810465
GEYKIMVA	8	Unmodified	_GEYKIMVA_					0	0	0		ENST00000595467.1_1_19:36037522-36037810:+|nuORF;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.7384948730469	2	455.738771	909.462989	0.7381	0.00033638	-1.5006	-0.00068389	-0.76251	-0.0003475	455.73822673372547	33.624	0.2784	33.624	33.538	33.817	0					14	7	3	0	0	0	0.49216	1	12462	12462		60.972	15.02	1	289950			12858	2385	8254	8286	13053	13053					0.0046363775977624755
GEYKMILVVQ	10	Unmodified	_GEYKMILVVQ_					0	0	0		PTRH2|p.R72Q|1|0.37|ENSG00000141378|chr17:59697764-59697764|C/T|missense_variant	PTRH2|p.R72Q|1|0.37|ENSG00000141378|chr17:59697764-59697764|C/T|missense_variant	PTRH2|p.R72Q|1|0.37|ENSG00000141378|chr17:59697764-59697764|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	393.8861083984375	3	393.886253	1178.63693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.777	1	32.777	32.277	33.277	0								0	0	0	0.4201	1	10617	10617		21.686	0	1				12859	11988	8255	8287	13054	13054					0.05475798465272419
GEYQRMGVM	9	Unmodified	_GEYQRMGVM_					0	0	0		nc|ENSG00000171848|P31350-2|RRM2;ENSG00000171848|ENST00000304567|RRM2	nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000171848|P31350-2|RRM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.741455078125	2	535.741519	1069.46849	-0.55315	-0.00029635	1.3535	0.00072512	0.80033	0.00042877	535.7423122216625	30.81	0.1589	30.81	30.742	30.901	0					9	5	2	0	0	0	0.21263	1	10165	10165		60.118	32.037	1	145830			12860	6327	8256	8288	13055	13055					-0.06347006720056925
GEYQRMGVM	9	Unmodified	_GEYQRMGVM_					0	0	0		nc|ENSG00000171848|P31350-2|RRM2;ENSG00000171848|ENST00000304567|RRM2	nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000171848|P31350-2|RRM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.74169921875	2	535.741519	1069.46849	1.9001	0.001018	-1.9931	-0.0010678	-0.092998	-4.9823E-05	535.7406298193308	30.97	0.26102	30.97	30.865	31.126	0					11	5	3	0	0	0	0.42902	1	11566	11566		39.253	0.44669	1	592460			12861	6327	8256	8288	13056	13056					-0.06347006720056925
GEYRAVTEL	9	Unmodified	_GEYRAVTEL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2672119140625	2	519.266739	1036.51892	1.6011	0.00083142	-0.98835	-0.00051322	0.6128	0.0003182	519.2662496862222	32.615	0.21458	32.615	32.557	32.771	0					8	4	2	0	0	0	0.12834	1	12328	12328		72.879	26.927	1	284480			12862	7569	8257	8289	13057	13057					0.002125622009543804
GEYTKGKKR	9	Unmodified	_GEYTKGKKR_					0	0	0			REV__ENST00000427157.1_1_6:113948832-113971249:-|nuORF	REV__ENST00000427157.1_1_6:113948832-113971249:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.20489501953125	3	356.204974	1065.59309	0.71641	0.00025519	-1.2168	-0.00043343	-0.50038	-0.00017824	356.2045502677637	17.108	0.25539	17.108	17.018	17.273	0					14	6	3	0	0	0	0.57706	1	4783	4783		24.519	12.086	1	515610	+		12863	19125	8258	8290	13058	13058					0.06291950083118536
GFAKGCAG	8	Unmodified	_GFAKGCAG_					0	0	0			REV__ENSG00000250571|ENST00000340042|GLI4	REV__ENSG00000250571|ENST00000340042|GLI4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.6681823730469	2	355.668149	709.321745	0.71467	0.00025419	-0.74942	-0.00026654	-0.034748	-1.2359E-05	355.6679241612384	28.461	0.4106	28.461	28.165	28.575	0					17	10	2	0	0	0	0.77625	1	10087	10087		5.0869	0.40514	1	264200	+		12864	17729	8259	8291	13059	13059					-0.04454315822829358
GFALTIIALY	10	Unmodified	_GFALTIIALY_					0	0	0			REV__tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	REV__tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.3173217773438	2	541.318243	1080.62193	3.5261	0.0019087	-3.7682	-0.0020398	-0.24212	-0.00013106	541.3161404715414	43.518	0.11469	43.518	43.437	43.551	0					7	4	2	0	0	0	0.57532	1	17422	17422		37.159	1.5408	1	56322	+		12865	22213	8260	8292	13060	13060					0.0848467465957583
GFCCPLGGLAA	11	2 Carbamidomethyl (C)	_GFC(Carbamidomethyl (C))C(Carbamidomethyl (C))PLGGLAA_	GFC(1)C(1)PLGGLAA		GFC(71)C(71)PLGGLAA		0	2	0		ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.75732421875	2	561.757169	1121.49979	0.12838	7.2121E-05	-0.31899	-0.00017919	-0.19061	-0.00010707	561.7569996668237	34.824	0.21804	34.824	34.724	34.942	0					17	10	2	0	0	0	0.22425	1	11751	11751		71.378	35.06	1	151500			12866	7084	8261	8293	13061	13061	298;299				-0.056104336859561954
GFEKLAGTT	9	Unmodified	_GFEKLAGTT_					0	0	0		ENST00000339554.7_2_9:140342831-140343164:-|nuORF	ENST00000339554.7_2_9:140342831-140343164:-|nuORF	ENST00000339554.7_2_9:140342831-140343164:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.24542236328125	2	462.245275	922.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.188	1	41.188	40.688	41.688	0								0	0	0	0.29774	1	16366	16366		35.618	5.1146	1				12867	8720	8262	8294	13062	13062					0.011657921435130447
GFFVIEPKM	9	Oxidation (M)	_GFFVIEPKM(Oxidation (M))_		GFFVIEPKM(1)		GFFVIEPKM(56)	0	0	1			REV__nc|ENSG00000096717|Q96EB6-2|SIRT1	REV__nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.27880859375	2	542.280803	1082.54705	0.30643	0.00016617	-4.3447	-0.0023561	-4.0383	-0.0021899	542.2789347292335	39.321	0.2215	39.321	39.212	39.434	0					11	7	2	0	0	0	0.25109	1	14954	14954		55.504	6.0627	1	174950	+		12868	13481	8263	8295	13063	13063		516			0.009081688566766388
GFGFGAGG	8	Unmodified	_GFGFGAGG_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.1537780761719	2	335.153189	668.291825	0.3721	0.00012471	1.5276	0.00051199	1.8997	0.0006367	335.15351427459285	43.699	0.13577	43.699	43.654	43.789	0					10	8	2	0	0	0	0.78118	1	13767	13767		1.619	0	1	32932	+	+	12869	12613	8264	8296	13064	13064					-0.05558931496511832
GFGFGAGG	8	Unmodified	_GFGFGAGG_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.1539001464844	2	335.153189	668.291825	1.4911	0.00049975	1.3251	0.00044411	2.8162	0.00094386	335.1535373577469	44.007	0.49475	44.007	43.758	44.253	0					41	26	2	0	0	0	0.78431	1	17161	17161		10.185	0	1	353440	+	+	12870	12613	8264	8296	13065	13065					-0.05558931496511832
GFGFGAGG	8	Unmodified	_GFGFGAGG_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.1537780761719	2	335.153189	668.291825	1.6167	0.00054184	0.77342	0.00025921	2.3901	0.00080106	335.15337456293224	43.94	0.70042	43.94	43.521	44.221	0					43	24	3	0	0	0	0.78431	1	17522	17522		10.185	0	1	313840	+	+	12871	12613	8264	8296	13066	13066					-0.05558931496511832
GFGGGAGLHNP	11	Unmodified	_GFGGGAGLHNP_					0	0	0			REV__nc|ENSG00000205560|Q92523-4|CPT1B	REV__nc|ENSG00000205560|Q92523-4|CPT1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2398376464844	2	492.238316	982.462078	2.7268	0.0013422	0.26835	0.00013209	2.9952	0.0014743	492.2384715087213	16.123	0.41911	16.123	15.815	16.234	0					13	8	3	0	0	0	0.33433	1	4409	4409		58.782	58.782	1	1529700	+		12872	17526	8265	8297	13067	13067					-0.02985440564907549
GFGRRIFVG	9	Unmodified	_GFGRRIFVG_					0	0	0		ENST00000469214.2_1_1:193029275-193029332:+|nuORF	ENST00000469214.2_1_1:193029275-193029332:+|nuORF	ENST00000469214.2_1_1:193029275-193029332:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.29193115234375	2	504.790518	1007.56648	-0.80674	-0.00040723	-1.051	-0.00053052	-1.8577	-0.00093776	504.7897821779228	41.28	0.11519	41.28	41.227	41.342	0					10	6	2	0	0	0	0.50461	1	13740	13740		31.955	7.4357	1	79621			12873	9824	8266	8298	13068	13068					0.0630030598247231
GFGTDFKK	8	Unmodified	_GFGTDFKK_					0	0	0		ENST00000511621.1_1_5:74011483-74012499:+|nuORF;ENST00000504459.5_1_5:74009375-74016573:+|nuORF;HEXB|p.M522Kfs*9|1|0.15|ENSG00000049860|chr5:74720697-74720698|-/AA|frameshift_variant;ENSG00000049860|ENST00000261416|HEXB	ENST00000511621.1_1_5:74011483-74012499:+|nuORF	ENST00000511621.1_1_5:74011483-74012499:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.234619140625	2	450.23471	898.454868	0.50237	0.00022618	-1.2694	-0.00057155	-0.76708	-0.00034537	450.2342313549526	31.454	0.33888	31.454	31.243	31.582	0					12	8	3	0	0	0	0.52345	1	10821	10821		57.811	57.811	1	408290			12874	1243	8267	8299	13069	13069					0.001578268346747791
GFGVHPKNIF	10	Unmodified	_GFGVHPKNIF_					0	0	0		nc|ENSG00000184611|Q9NS40-2|KCNH7;KCNH7|p.N805Mfs*21|1|0.44|ENSG00000184611|chr2:162396939-162396939|T/-|frameshift_variant;KCNH7|p.D991Kfs*12|1|0.24|ENSG00000184611|chr2:162380007-162380014|GCATGTCA/-|frameshift_variant;ENSG00000184611|ENST00000332142|KCNH7	nc|ENSG00000184611|Q9NS40-2|KCNH7	nc|ENSG00000184611|Q9NS40-2|KCNH7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.5391540527344	3	372.538064	1114.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.686	1	26.686	26.186	27.186	0								0	0	0	0.4201	1	8628	8628		18.262	0.89712	1				12875	7025	8268	8300	13070	13070					0.03965155434070766
GFIHLVIEGW	10	Unmodified	_GFIHLVIEGW_					0	0	0		EBP|p.V208*|1|0.28|ENSG00000147155|chrX:48528386-48528386|G/-|frameshift_variant;ENSG00000147155|ENST00000495186|EBP	EBP|p.V208*|1|0.28|ENSG00000147155|chrX:48528386-48528386|G/-|frameshift_variant	EBP|p.V208*|1|0.28|ENSG00000147155|chrX:48528386-48528386|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.8201904296875	2	585.818941	1169.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.459	1	23.459	22.959	23.959	0								0	0	0	0.37276	1	6795	6795		38.806	14.287	1				12876	872	8269	8301	13071	13071					0.04530308748326206
GFIPTYPAN	9	Unmodified	_GFIPTYPAN_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;SYNRG|p.N610Tfs*3|2|0.33|ENSG00000275066|chr17:37553894-37553894|T/-|frameshift_variant	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2471923828125	2	490.247818	978.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.326	1	20.326	19.826	20.826	0								0	0	0	0.24724	1	6288	6288		44.117	1.7207	1				12877	8104	8270	8302	13072	13072					-0.009019039938721107
GFKPFDLVI	9	Unmodified	_GFKPFDLVI_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2960205078125	2	518.29731	1034.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.301	1	28.301	27.801	28.801	0								0	0	0	0.27025	1	9376	9376		40.778	3.6191	1				12878	4052	8271	8303	13073	13073					0.06416118971037577
GFLALRCF	8	Unmodified	_GFLALRCF_					0	0	0		ENST00000483551.6_1_15:69082217-69082433:-|nuORF	ENST00000483551.6_1_15:69082217-69082433:-|nuORF	ENST00000483551.6_1_15:69082217-69082433:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7509765625	2	463.749473	925.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.871	1	34.871	34.371	35.371	0								0	0	0	1.7419	1	12379	12379		35.201	8.4046	1				12879	9982	8272	8304	13074	13074					0.01867067579144077
GFLEDKGGIMK	11	Unmodified	_GFLEDKGGIMK_					0	0	0			REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.8133544921875	2	597.812999	1193.61144	0.48341	0.00028899	-0.48198	-0.00028813	0.0014344	8.5751E-07	597.8130743702837	26.702	0.23919	26.702	26.639	26.878	0					14	5	4	0	0	0	0.60545	1	8647	8647		41.427	8.6142	1	158790	+		12880	22126	8273	8305	13075	13075					0.022383239428108936
GFLIMMTFLI	10	Oxidation (M)	_GFLIMM(Oxidation (M))TFLI_		GFLIM(0.168)M(0.832)TFLI		GFLIM(-7)M(7)TFLI	0	0	1			REV__tr|U7SN94|U7SN94_FUSNULysozymeinhibitorLprIN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01758PE=4SV=1	REV__tr|U7SN94|U7SN94_FUSNULysozymeinhibitorLprIN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01758PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.3198852539062	2	601.321614	1200.62867	-1.8787	-0.0011297	-1.768	-0.0010631	-3.6467	-0.0021928	601.3204402375695	28.831	0.34896	28.831	28.737	29.086	0					16	8	4	0	0	0	0.51121	1	9609	9609		44.117	6.3053	2	408830	+		12881	21798	8274	8306	13076	13076		791			0.036385282242690664
GFLIPLLYI	9	Unmodified	_GFLIPLLYI_					0	0	0		ENST00000262376.10_1_16:4931488-4931788:+|nuORF	ENST00000262376.10_1_16:4931488-4931788:+|nuORF	ENST00000262376.10_1_16:4931488-4931788:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8281860351562	2	524.825704	1047.63685	1.4037	0.00073672	2.6039	0.0013666	4.0077	0.0021033	524.8267770531226	55.296	0.13871	55.296	55.228	55.366	0					11	8	2	0	0	0	0.59802	1	16140	16140		14.664	0	1	47406			12882	8306	8275	8307	13077	13077					0.1149416652756372
GFLQAFQKF	9	Unmodified	_GFLQAFQKF_					0	0	0			REV__nc|ENSG00000082512|O00463-3|TRAF5	REV__nc|ENSG00000082512|O00463-3|TRAF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7952270507812	2	543.292559	1084.57057	2.0057	0.0010897	-0.3053	-0.00016587	1.7004	0.00092384	543.7941149068276	35.011	0.59788	35.011	34.761	35.359	0					49	17	4	0	0	0	0.49003	1	13540	13540		33.516	1.5607	1	714680	+		12883	13318	8276	8308	13078	13078					0.031663506855238666
GFLQLFKAT	9	Unmodified	_GFLQLFKAT_					0	0	0			REV__TRIM47|p.D438del|1|0.31|ENSG00000132481|chr17:75875086-75875088|GTC/-|inframe_deletion	REV__TRIM47|p.D438del|1|0.31|ENSG00000132481|chr17:75875086-75875088|GTC/-|inframe_deletion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.19903564453125	3	342.199049	1023.57532	-0.058734	-2.0099E-05	0.38002	0.00013004	0.32128	0.00010994	342.19908871029764	25.285	0.26987	25.285	25.128	25.397	0					10	6	2	0	0	0	0.5879	1	7994	7994		30.318	14.311	1	155280	+		12884	22235	8277	8309	13079	13079					0.06447234828283399
GFNAFDYIL	9	Unmodified	_GFNAFDYIL_					0	0	0			REV__nc|ENSG00000076242|P40692-2|MLH1	REV__nc|ENSG00000076242|P40692-2|MLH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7645263671875	2	530.260925	1058.5073	1.6471	0.00087341	-0.53258	-0.00028241	1.1146	0.00059101	530.2606144257438	39.915	2.3018	39.915	38.729	41.03	0					164	49	5	0	0	0	0.37197	1	16117	16117		44.117	10.195	1	2372700	+		12885	13246	8278	8310	13080	13080					-0.019616348223962632
GFPGAPGA	8	Unmodified	_GFPGAPGA_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant;COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant;COL2A1|p.G741Wfs*29|1|0.36|ENSG00000139219|chr12:47982583-47982584|-/G|frameshift_variant	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.16925048828125	2	337.168839	672.323125	1.5972	0.00053852	0.48359	0.00016305	2.0808	0.00070158	337.16892444942897	45.729	0.32814	45.729	45.62	45.949	0					21	14	2	0	0	0	0.79462	1	18303	18303		16.705	0	1	230520			12886	4316	8279	8311	13081	13081					-0.02614358462437849
GFPIPKVGL	9	Unmodified	_GFPIPKVGL_					0	0	0			REV__ENSG00000169208|ENST00000641040|OR10G3	REV__ENSG00000169208|ENST00000641040|OR10G3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.284423828125	2	464.286746	926.558939	-0.43873	-0.0002037	-4.1333	-0.001919	-4.572	-0.0021227	464.2851621921463	34.94	0.34769	34.94	34.818	35.165	0					20	11	3	0	0	0	0.097811	1	12393	12393		79.939	3.0926	1	260540	+		12887	16299	8280	8312	13082	13082					0.09272153662175242
GFPNCRVQ	8	Unmodified	_GFPNCRVQ_					0	0	0			REV__ENSG00000006016|ENST00000392386|CRLF1	REV__ENSG00000006016|ENST00000392386|CRLF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7243347167969	2	460.723987	919.433421	0.72251	0.00033288	0.11905	5.4851E-05	0.84156	0.00038773	460.7240378749537	14.789	0.46739	14.789	14.68	15.147	0					14	9	3	0	0	0	0.70055	1	3922	3922		33.516	33.516	1	3739200	+		12888	12845	8281	8313	13083	13083					-0.02951881465696715
GFQSTRTKAT	10	Unmodified	_GFQSTRTKAT_					0	0	0			REV__nc|ENSG00000143437|P27540-2|ARNT	REV__nc|ENSG00000143437|P27540-2|ARNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7931518554688	2	548.790912	1095.56727	3.7977	0.0020841	-0.102	-5.5975E-05	3.6957	0.0020282	548.7910842756229	42.059	0.53553	42.059	41.872	42.407	0					34	14	4	0	0	0	0.27065	1	16750	16750		70.816	4.9188	1	847070	+		12889	15192	8282	8314	13084	13084					0.023310558408411453
GFRLVSTR	8	Unmodified	_GFRLVSTR_					0	0	0		KCNRG|p.H224R|1|0.29|ENSG00000198553|chr13:50020306-50020306|A/G|missense_variant	KCNRG|p.H224R|1|0.29|ENSG00000198553|chr13:50020306-50020306|A/G|missense_variant	KCNRG|p.H224R|1|0.29|ENSG00000198553|chr13:50020306-50020306|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.273681640625	2	468.274701	934.534849	-0.12882	-6.0322E-05	-1.3303	-0.00062296	-1.4591	-0.00068328	468.2738397473522	30.471	0.11275	30.471	30.367	30.479	0					4	2	2	0	0	0	0.69548	1	11384	11384		34.173	1.3601	1	72604			12890	11248	8283	8315	13085	13085					0.06496313228512918
GFSGLDVAHLC	11	Unmodified	_GFSGLDVAHLC_					0	0	0		ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.7667236328125	2	559.768591	1117.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.941	1	29.941	29.441	30.441	0								0	0	0	0.44646	1	9492	9492		26.693	1.2427	1				12891	6888	8284	8316	13086	13086					-0.031430912968289704
GFSLGLVYVKD	11	Unmodified	_GFSLGLVYVKD_					0	0	0			REV__sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1	REV__sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.329345703125	2	599.329339	1196.64412	0.20617	0.00012356	0.25092	0.00015038	0.45709	0.00027395	599.3294132192062	41.451	1.0797	41.451	40.794	41.874	0					66	40	2	0	0	0	0.69524	1	16154	16154		28.081	3.5623	1	126190	+		12892	21551	8285	8317	13087	13087					0.05366854337330551
GFVKVVKNK	9	Unmodified	_GFVKVVKNK_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.8230895996094	2	509.824027	1017.6335	-0.11033	-5.6247E-05	0.12257	6.2487E-05	0.012239	6.2396E-06	509.8239036938786	18.234	0.10778	18.234	18.178	18.286	0					5	4	2	0	0	0	0.25109	1	4504	4504		55.504	14.932	1	70968			12893	3263	8286	8318	13088	13088					0.12538916473556583
GFVKVVKNK	9	Unmodified	_GFVKVVKNK_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.2182922363281	3	340.218443	1017.6335	0.51108	0.00017388	-0.86842	-0.00029545	-0.35734	-0.00012157	340.2180942601458	18.556	0.18032	18.556	18.461	18.641	0					6	4	2	0	0	0	0.54267	1	5457	5457		42.864	30.053	1	949840			12894	3263	8286	8318	13089	13089					0.12538916473556583
GFVKVVKNK	9	Unmodified	_GFVKVVKNK_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.82403564453125	2	509.824027	1017.6335	-0.014355	-7.3185E-06	-0.058281	-2.9713E-05	-0.072636	-3.7031E-05	509.82403408259574	18.556	0.18032	18.556	18.461	18.641	0					7	4	2	0	0	0	0.05357	1	5460	5460		94.006	36.195	1	600330			12895	3263	8286	8318	13090	13090					0.12538916473556583
GFVKVVKNK	9	Unmodified	_GFVKVVKNK_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.8232421875	2	509.824027	1017.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.264	1	18.264	17.764	18.764	0								0	0	0	0.16876	1	4742	4742		55.504	11.387	1				12896	3263	8286	8318	13091	13091					0.12538916473556583
GFVKVVKNK	9	Unmodified	_GFVKVVKNK_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.8241271972656	2	509.824027	1017.6335	-0.41405	-0.00021109	0.76894	0.00039202	0.35489	0.00018093	509.82436770603067	18.502	0.16789	18.502	18.427	18.595	0					7	3	3	0	0	0	0.030949	1	5694	5694		108.09	50.276	1	302220			12897	3263	8286	8318	13092	13092					0.12538916473556583
GFVNAHVV	8	Unmodified	_GFVNAHVV_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5;REV__ENST00000536416.5_1_12:121783870-121790143:-|nuORF	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7311706542969	2	421.729595	841.444637	0.3888	0.00016397	2.5787	0.0010875	2.9675	0.0012515	421.73083075322063	19.911	0.25529	19.911	19.795	20.05	0					9	5	3	0	0	0	0.6282	1	6096	6096		44.531	0.41427	1	174300	+		12898	13402;20106	8287	8319	13093	13093					0.01757263900083217
GFYHGLSSTLL	11	Unmodified	_GFYHGLSSTLL_					0	0	0		ENSG00000120329|ENST00000239451|SLC25A2;ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000120329|ENST00000239451|SLC25A2	ENSG00000120329|ENST00000239451|SLC25A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	597.8130493164062	2	597.811313	1193.60807	1.5474	0.00092506	0.93103	0.00055658	2.4784	0.0014816	597.8116887435754	26.678	0.18741	26.678	26.592	26.779	0					13	6	3	0	0	0	0.6208	1	8128	8128		32.812	21.947	1	76114			12899	2184	8288	8320	13094	13094					0.0190139716048634
GFYPGDSSM	9	Unmodified	_GFYPGDSSM_					0	0	0			REV__ENST00000406711.5_2_2:37425806-37426888:+|nuORF	REV__ENST00000406711.5_2_2:37425806-37426888:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.6932067871094	2	480.692018	959.369483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.965	1	28.965	28.465	29.465	0								0	0	0	0.36766	1	9389	9389		20.482	1.1219	1		+		12900	18977	8289	8321	13095	13095					-0.11182706413296728
GGAALSMR	8	Unmodified	_GGAALSMR_					0	0	0			REV__ENSG00000113430|ENST00000231357|IRX4	REV__ENSG00000113430|ENST00000231357|IRX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.70013427734375	2	381.69998	761.385408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.439	1	28.439	27.939	28.939	0								0	0	0	1.7419	1	8887	8887		18.324	3.6603	1		+		12901	14040	8290	8322	13096	13096					-0.004829553857462088
GGAALSMR	8	Unmodified	_GGAALSMR_					0	0	0			REV__ENSG00000113430|ENST00000231357|IRX4	REV__ENSG00000113430|ENST00000231357|IRX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	381.70025634765625	2	381.69998	761.385408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.603	1	28.603	28.103	29.103	0								0	0	0	1.7419	1	9515	9515		26.796	2.5934	1		+		12902	14040	8290	8322	13097	13097					-0.004829553857462088
GGAESHTFK	9	Unmodified	_GGAESHTFK_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1;ENST00000460900.1_1_14:105954779-105954845:+|nuORF;ENST00000496700.5_1_14:105954601-105954845:+|nuORF	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.22479248046875	2	467.224874	932.435195	-0.43636	-0.00020388	0.08856	4.1378E-05	-0.3478	-0.0001625	467.22494439285856	15.42	0.14177	15.42	15.348	15.49	0					13	6	3	0	0	0	0.0406	1	3341	3341		98.629	29.843	1	251240			12903	7783	8291	8323	13098	13098					-0.033725491761060766
GGAESHTFK	9	Unmodified	_GGAESHTFK_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1;ENST00000460900.1_1_14:105954779-105954845:+|nuORF;ENST00000496700.5_1_14:105954601-105954845:+|nuORF	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2246398925781	2	467.224874	932.435195	-0.65763	-0.00030726	0.11667	5.4513E-05	-0.54096	-0.00025275	467.22473907914485	15.693	0.46285	15.693	15.601	16.064	0					14	11	2	0	0	0	0.016683	1	4112	4112		127.46	31.647	1	1151400			12904	7783	8291	8323	13099	13099					-0.033725491761060766
GGAESHTFK	9	Unmodified	_GGAESHTFK_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1;ENST00000460900.1_1_14:105954779-105954845:+|nuORF;ENST00000496700.5_1_14:105954601-105954845:+|nuORF	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.224609375	2	467.224874	932.435195	-1.1146	-0.00052078	0.53296	0.00024901	-0.58165	-0.00027176	467.2251605142134	15.449	0.13456	15.449	15.388	15.523	0					9	4	3	0	0	0	0.032052	1	3527	3527		107.01	32.752	1	202290			12905	7783	8291	8323	13100	13100					-0.033725491761060766
GGAESHTFK	9	Unmodified	_GGAESHTFK_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1;ENST00000460900.1_1_14:105954779-105954845:+|nuORF;ENST00000496700.5_1_14:105954601-105954845:+|nuORF	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2246398925781	2	467.224874	932.435195	-1.1465	-0.00053567	0.70087	0.00032746	-0.44562	-0.0002082	467.2251316687567	15.66	0.21794	15.66	15.6	15.818	0					9	4	3	0	0	0	0.016683	1	4336	4336		127.46	42.546	1	937510			12906	7783	8291	8323	13101	13101					-0.033725491761060766
GGAGAAPPLVL	11	Unmodified	_GGAGAAPPLVL_					0	0	0			REV__PLXND1|p.N675Tfs*5|2|0.17|ENSG00000004399|chr3:129584392-129584392|G/-|frameshift_variant	REV__PLXND1|p.N675Tfs*5|2|0.17|ENSG00000004399|chr3:129584392-129584392|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.77105712890625	2	461.77146	921.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.852	1	35.852	35.352	36.352	0								0	0	0	0.23003	1	13879	13879		60.294	7.9948	1		+		12907	12823	8292	8324	13102	13102					0.064463752771303
GGARAWAL	8	Unmodified	_GGARAWAL_					0	0	0		ENST00000577929.1_1_17:7477225-7477378:+|nuORF	ENST00000577929.1_1_17:7477225-7477378:+|nuORF	ENST00000577929.1_1_17:7477225-7477378:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.88751220703125	2	401.221937	800.429321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.482	1	20.482	19.982	20.982	0								0	0	0	1.7419	1	6513	6513		26.796	0	1				12908	10845	8293	8325	13103	13103					0.021123971028828237
GGDPNSAN	8	Unmodified	_GGDPNSAN_					0	0	0		PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant;ENSG00000139200|ENST00000534837|PIANP;nc|ENSG00000139200|Q8IYJ0|PIANP	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.65252685546875	2	366.151375	730.288196	1.1961	0.00043794	2.0498	0.00075055	3.2459	0.0011885	366.1529724511021	45.551	0.22977	45.551	45.484	45.714	0					21	12	2	0	0	0	0.78142	1	17624	17624		23.042	6.5693	1	105750			12909	4314	8294	8326	13104	13104					-0.08773646061047202
GGEAAEEPFKR	11	Unmodified	_GGEAAEEPFKR_					0	0	0			REV__ENSG00000152784|ENST00000415738|PRDM8	REV__ENSG00000152784|ENST00000415738|PRDM8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	595.7954711914062	2	595.793652	1189.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.464	1	21.464	20.964	21.964	0								0	0	0	0.2671	1	6167	6167		56.434	12.783	1		+		12910	15519	8295	8327	13105	13105					-0.014452653673743043
GGERNSVS	8	Unmodified	_GGERNSVS_					0	0	0		ENST00000258991.7_1_17:62225787-62225874:-|nuORF	ENST00000258991.7_1_17:62225787-62225874:-|nuORF	ENST00000258991.7_1_17:62225787-62225874:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.1933898925781	2	403.193574	804.372594	0.95903	0.00038668	-1.3131	-0.00052943	-0.35406	-0.00014276	403.19307055432165	14.033	0.3104	14.033	13.974	14.284	0					12	6	3	0	0	0	0.63077	1	3563	3563		44.117	1.7207	1	1715800			12911	8281	8296	8328	13106	13106					-0.037416952442754337
GGFIVGLALL	10	Unmodified	_GGFIVGLALL_					0	0	0			REV__nc|ENSG00000114948|O75077-2|ADAM23	REV__nc|ENSG00000114948|O75077-2|ADAM23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.297607421875	2	480.299853	958.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.89	1	11.89	11.39	12.39	0								0	0	0	0.4201	1	2396	2396		3.6843	0	1		+		12912	20983	8297	8329	13107	13107					0.10420422833658449
GGFLSYAI	8	Unmodified	_GGFLSYAI_					0	0	0			REV__ENST00000446228.5_1_2:162758621-162834241:+|nuORF	REV__ENST00000446228.5_1_2:162758621-162834241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2189636230469	2	414.218529	826.422505	0.062484	2.5882E-05	0.70413	0.00029166	0.76661	0.00031755	414.21892091683236	41.347	0.10236	41.347	41.301	41.403	0					6	4	2	0	0	0	0.61433	1	16262	16262		46.766	2.2354	1	77124	+		12913	15226	8298	8330	13108	13108					0.002350394316636084
GGFRCLAF	8	Unmodified	_GGFRCLAF_					0	0	0		ENST00000476366.1_1_22:45937122-45946826:+|nuORF;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1	ENST00000476366.1_1_22:45937122-45946826:+|nuORF	ENST00000476366.1_1_22:45937122-45946826:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.7171936035156	2	435.718173	869.421793	-1.02	-0.00044445	1.3485	0.00058754	0.32841	0.00014309	435.7185789047826	33.632	0.35571	33.632	33.526	33.882	0					21	13	2	0	0	0	0.64096	1	11287	11287		42.474	5.446	1	391570			12914	1591	8299	8331	13109	13109					-0.018140784890420036
GGGGAGFF	8	Unmodified	_GGGGAGFF_					0	0	0			REV__nc|ENSG00000139737|Q8ND83|SLAIN1	REV__nc|ENSG00000139737|Q8ND83|SLAIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.1539306640625	2	335.153189	668.291825	1.6167	0.00054184	0.77342	0.00025921	2.3901	0.00080106	335.15337456293224	43.94	0.70042	43.94	43.521	44.221	0					43	24	3	0	0	0	0.77625	1	17715	17715		5.0869	3.4679	1	313840	+		12915	15047	8300	8332	13110	13110					-0.055589314965232006
GGGGFGRG	8	Unmodified	_GGGGFGRG_					0	0	0		WIPF1|p.G82R|1|0.57|ENSG00000115935|chr2:174575318-174575318|C/T|missense_variant	REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.66192626953125	2	332.661712	663.308872	0.3895	0.00012957	-0.3284	-0.00010925	0.061099	2.0325E-05	332.66164998006406	15.887	0.26078	15.887	15.786	16.047	0					10	5	3	0	0	0	0.6282	1	4424	4424		44.531	0	1	241180	+	+	12916	12613	8301	8333	13111	13111					-0.03625010890721114
GGGGGRSGAL	10	Unmodified	_GGGGGRSGAL_					0	0	0			REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.703857421875	2	394.704109	787.393664	0.11032	4.3543E-05	-0.14254	-5.6261E-05	-0.03222	-1.2717E-05	394.7040856097268	34.774	0.35809	34.774	34.657	35.015	0					26	10	4	0	0	0	0.64178	1	13410	13410		29.15	6.1071	1	1114700	+		12917	18456	8302	8334	13112	13112					-0.008536851447615845
GGGGGRSGAL	10	Unmodified	_GGGGGRSGAL_					0	0	0			REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.70465087890625	2	394.704109	787.393664	0.20543	8.1086E-05	0.37981	0.00014991	0.58525	0.000231	394.7042900693616	34.55	0.26071	34.55	34.447	34.708	0					12	7	3	0	0	0	0.52707	1	12229	12229		42.396	7.1954	1	144820	+		12918	18456	8302	8334	13113	13113					-0.008536851447615845
GGGGGRSGAL	10	Unmodified	_GGGGGRSGAL_					0	0	0			REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.7041015625	2	394.704109	787.393664	-0.654	-0.00025814	0.65408	0.00025817	8.1295E-05	3.2088E-08	394.704406117475	34.742	0.55606	34.742	34.589	35.145	0					22	11	3	0	0	0	0.44469	1	13331	13331		51.335	6.8044	1	1591400	+		12919	18456	8302	8334	13114	13114					-0.008536851447615845
GGGGPGMGP	9	Unmodified	_GGGGPGMGP_					0	0	0		ENSG00000178445|ENST00000321612|GLDC;GLDC|p.G771R|1|0.39|ENSG00000178445|chr9:6554673-6554673|C/T|missense_variant	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.6507873535156	2	343.649956	685.285359	0.52243	0.00017953	-0.23755	-8.1635E-05	0.28488	9.7897E-05	343.6505145844434	52	0.28674	52	51.814	52.101	0					30	17	2	0	0	0	0.61124	1	19216	19216		14.664	0	1	375010			12920	6717	8303	8335	13115	13115					-0.06987192719554969
GGGGRRGGGG	10	Unmodified	_GGGGRRGGGG_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B;ENST00000356692.9_1_3:73046001-73046169:+|nuORF	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.1994934082031	2	394.199525	786.384497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.295	1	48.295	47.795	48.795	0								0	0	0	0.40446	1	18315	18315		29.15	0	1				12921	6951	8304	8336	13116	13116					-0.01724033710411277
GGGGTLVV	8	Unmodified	_GGGGTLVV_					0	0	0		LRCH2|p.P51L|1|0.3|ENSG00000130224|chrX:115233890-115233890|G/A|missense_variant;LRCH2|p.K721Sfs*22|1|0.19|ENSG00000130224|chrX:115122543-115122543|T/-|frameshift_variant;nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	LRCH2|p.P51L|1|0.3|ENSG00000130224|chrX:115233890-115233890|G/A|missense_variant	LRCH2|p.P51L|1|0.3|ENSG00000130224|chrX:115233890-115233890|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.19110107421875	2	330.189771	658.36499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.036	1	47.036	46.536	47.536	0								0	0	0	1.7419	1	17305	17305		29.842	6.8048	1				12922	3628	8305	8337	13117	13117					0.02214197226089709
GGGKAGAF	8	Unmodified	_GGGKAGAF_					0	0	0			REV__ENST00000424404.1_1_7:121947107-121947290:+|nuORF	REV__ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.67425537109375	2	332.674289	663.334024	0.52187	0.00017361	-0.47268	-0.00015725	0.049192	1.6365E-05	332.67410700075624	17.144	0.42112	17.144	16.969	17.39	0					24	10	4	0	0	0	0.77697	1	4771	4771		4.3163	2.8514	1	1905400	+		12923	19106	8306	8338	13118	13118					-0.011109560881436664
GGGKAGAF	8	Unmodified	_GGGKAGAF_					0	0	0			REV__ENST00000424404.1_1_7:121947107-121947290:+|nuORF	REV__ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.67437744140625	2	332.674289	663.334024	-0.70273	-0.00023378	0.56465	0.00018784	-0.13808	-4.5935E-05	332.6744539749334	16.923	0.17287	16.923	16.82	16.993	0					12	7	2	0	0	0	0.7764	1	4128	4128		4.6817	0	1	110860	+		12924	19106	8306	8338	13119	13119					-0.011109560881436664
GGGPGARGAEY	11	Unmodified	_GGGPGARGAEY_					0	0	0			REV__nc|ENSG00000173153|P11474-2|ESRRA	REV__nc|ENSG00000173153|P11474-2|ESRRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2349853515625	2	496.23323	990.451907	2.8692	0.0014238	1.0415	0.00051683	3.9107	0.0019406	496.2337312214758	27.534	0.22047	27.534	27.373	27.594	0					12	4	3	0	0	0	0.60656	1	9881	9881		36.447	1.246	1	838220	+		12925	16494	8307	8339	13120	13120					-0.04370048290138584
GGGRAAVHR	9	Unmodified	_GGGRAAVHR_					0	0	0		ENST00000216124.9_1_22:51065986-51066424:-|nuORF;ENST00000395621.7_1_22:51065986-51066424:-|nuORF;ENST00000356098.9_1_22:51065986-51066424:-|nuORF	ENST00000216124.9_1_22:51065986-51066424:-|nuORF	ENST00000216124.9_1_22:51065986-51066424:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7456970214844	2	440.746642	879.478731	-1.0438	-0.00046005	-1.7528	-0.00077254	-2.7966	-0.0012326	440.74587232525755	12.424	0.070398	12.424	12.372	12.442	0					6	4	2	0	0	0	0.61124	1	2452	2452		7.1934	2.5116	1	92964			12926	8159	8308	8340	13121	13121					0.03417105111702767
GGGSKVPQK	9	Unmodified	_GGGSKVPQK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;nc|ENSG00000181163|P06748-3|NPM1;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000403105.1_1_6:70415475-70415688:-|nuORF;ENST00000458237.1_1_X:32224171-32224564:+|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.245361328125	2	429.245609	856.476666	0.95007	0.00040781	-1.4062	-0.00060362	-0.45616	-0.00019581	429.2449529115436	12.551	0.13234	12.551	12.469	12.601	0					5	3	2	0	0	0	0.098791	1	2866	2866		79.713	14.247	1	96253			12927	6841	8309	8341	13122	13122					0.04268631583227034
GGHLHHLR	8	Unmodified	_GGHLHHLR_					0	0	0		ENST00000303592.3_1_22:38823883-38851043:-|nuORF	ENST00000303592.3_1_22:38823883-38851043:-|nuORF	ENST00000303592.3_1_22:38823883-38851043:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7559814453125	2	463.75701	925.499467	-0.72423	-0.00033587	-0.39918	-0.00018512	-1.1234	-0.00052099	463.7569949345532	14.503	0.073498	14.503	14.443	14.516	0					5	3	2	0	0	0	0.78146	1	3152	3152		23.037	4.7123	1	35530			12928	8507	8310	8342	13123	13123					0.03373695491370654
GGKAGKGG	8	Unmodified	_GGKAGKGG_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B;CHMP4B|p.Q23Rfs*14|1|0.33|ENSG00000101421|chr20:33811530-33811530|C/-|frameshift_variant	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	316.1803283691406	2	316.179738	630.344923	2.9947	0.00094685	-0.76871	-0.00024305	2.2259	0.0007038	316.1794060555863	46.936	0.21899	46.936	46.843	47.062	0					13	10	2	0	0	0	0.78216	1	18770	18770		8.8223	0	1	57574			12929	2119	8311	8343	13124	13124					0.01496446286137143
GGKASWRGSR	10	Unmodified	_GGKASWRGSR_					0	0	0		ENST00000537350.5_2_1:167666745-167666832:+|nuORF	ENST00000537350.5_2_1:167666745-167666832:+|nuORF	ENST00000537350.5_2_1:167666745-167666832:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.295654296875	2	531.283589	1060.55262	2.4296	0.0012908	2.6236	0.0013939	5.0532	0.0026847	531.2841222295389	29.195	0.61575	29.195	28.968	29.584	0					38	15	4	0	0	0	0.35046	1	10347	10347		61.691	6.915	1	813580			12930	10501	8312	8344	13125	13125					0.024770284833721234
GGKGAHKK	8	Unmodified	_GGKGAHKK_					0	0	0			REV__nc|ENSG00000188517|Q9BXS0-2|COL25A1	REV__nc|ENSG00000188517|Q9BXS0-2|COL25A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.7351379394531	2	391.735212	781.455871	0.4344	0.00017017	-0.41103	-0.00016101	0.023376	9.1571E-06	391.73500840584353	21.28	0.51369	21.28	20.995	21.509	0					15	10	2	0	0	0	0.78216	1	7034	7034		8.8223	8.8223	1	90218	+		12931	21167	8313	8345	13126	13126					0.056400859942300485
GGKGAKGS	8	Unmodified	_GGKGAKGS_					0	0	0			REV__PIN4|p.G104Wfs*3|1|0.12|ENSG00000102309|chrX:72196901-72196902|-/T|frameshift_variant	REV__PIN4|p.G104Wfs*3|1|0.12|ENSG00000102309|chrX:72196901-72196902|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.1855163574219	2	331.18502	660.355488	3.0064	0.00099567	-0.91405	-0.00030272	2.0923	0.00069295	331.1844984410226	42.293	0.24471	42.293	42.198	42.443	0					9	6	2	0	0	0	0.78122	1	16879	16879		8.2313	3.5495	1	77539	+		12932	13632	8314	8346	13127	13127					0.011724289405719901
GGLALLLLGVA	11	Unmodified	_GGLALLLLGVA_					0	0	0		EFNB3|p.G279Vfs*15|1|0.44|ENSG00000108947|chr17:7709384-7709384|G/-|frameshift_variant;ENSG00000108947|ENST00000226091|EFNB3	EFNB3|p.G279Vfs*15|1|0.44|ENSG00000108947|chr17:7709384-7709384|G/-|frameshift_variant	EFNB3|p.G279Vfs*15|1|0.44|ENSG00000108947|chr17:7709384-7709384|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.8260803222656	2	498.826235	995.637917	-0.052693	-2.6284E-05	0.21159	0.00010555	0.1589	7.9264E-05	498.82619184423555	27.813	0.10488	27.813	27.742	27.847	0					5	3	2	0	0	0	0.73592	1	8628	8628		24.203	0	1	54024			12933	888	8315	8347	13128	13128					0.13992380896479517
GGLPERSVSL	10	Unmodified	_GGLPERSVSL_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;KHSRP|p.Q699Sfs*24|1|0.35|ENSG00000088247|chr19:6415173-6415173|G/-|frameshift_variant;KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant;ENSG00000088247|ENST00000600480|KHSRP;KHSRP|p.G221Rfs*37|1|0.43|ENSG00000088247|chr19:6418822-6418823|-/G|frameshift_variant	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7822570800781	2	507.782556	1013.55056	1.1292	0.00057336	-1.9582	-0.00099436	-0.82909	-0.000421	507.78143692322834	33.476	0.43098	33.476	33.259	33.69	0					29	10	4	0	0	0	0.44292	1	12812	12812		51.528	5.5555	1	1453800			12934	1774	8316	8348	13129	13129					0.04432554954905754
GGLPVPQL	8	Unmodified	_GGLPVPQL_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609;REV__ZNF609|p.R194Q|1|0.34|ENSG00000180357|chr15:64500000-64500000|G/A|missense_variant	REV__ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	390.7323913574219	2	390.734346	779.454139	0.0068276	2.6678E-06	-3.0051	-0.0011742	-2.9983	-0.0011715	390.7330865306189	48.058	0.19402	48.058	47.958	48.152	0					18	12	2	0	0	0	0.78431	1	15170	15170		10.185	0.71421	1	72597	+		12935	16807;22330	8317	8349	13130	13130					0.055590321856129776
GGLVSTGKTVV	11	Unmodified	_GGLVSTGKTVV_					0	0	0			REV__chr12:56104796-56106588|270|17.72|0.0|20.76|+|1|None,PA2G4|1	REV__chr12:56104796-56106588|270|17.72|0.0|20.76|+|1|None,PA2G4|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.3000183105469	2	509.300581	1016.58661	0.19086	9.7205E-05	0.24933	0.00012698	0.44019	0.00022419	509.3006426742855	16.252	0.075022	16.252	16.195	16.27	0					4	2	2	0	0	0	0.64626	1	3815	3815		32.751	1.2207	1	39575	+		12936	12464	8318	8350	13131	13131					0.07898012131749965
GGMFGVVFLI	10	Unmodified	_GGMFGVVFLI_					0	0	0			REV__POPDC3|p.S232Qfs*3|1|0.22|ENSG00000132429|chr6:105158652-105158652|A/-|frameshift_variant	REV__POPDC3|p.S232Qfs*3|1|0.22|ENSG00000132429|chr6:105158652-105158652|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2874145507812	2	520.285889	1038.55722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.928	1	32.928	32.428	33.428	0								0	0	0	0.18612	1	12459	12459		65.897	2.5912	1		+		12937	14655	8319	8351	13132	13132					0.039487765819103515
GGMGEPFPIT	10	Unmodified	_GGMGEPFPIT_					0	0	0			REV__ENST00000530208.1_1_11:86014499-86055761:+|nuORF	REV__ENST00000530208.1_1_11:86014499-86055761:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2411193847656	2	503.239135	1004.46372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.619	1	28.619	28.119	29.119	0								0	0	0	0.3428	1	10506	10506		44.117	1.6423	1		+		12938	15406	8320	8352	13133	13133					-0.03833567591186693
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.78277587890625	2	490.783513	979.552473	-0.056738	-2.7846E-05	-0.83445	-0.00040954	-0.89119	-0.00043738	490.78321899448366	31.979	0.53603	31.979	31.839	32.375	0					50	22	4	0	0	0	0.37197	1	10276	10276		44.117	1.7207	1	1473700			12939	8339	8321	8353	13134	13134					0.06187892439152165
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.52471923828125	3	327.524767	979.552473	0.6385	0.00020912	-1.1595	-0.00037976	-0.521	-0.00017064	327.52449792238076	32.261	0.62251	32.261	32.099	32.721	0					43	15	5	0	0	0	0.14603	1	11802	11802		85.161	40.784	1	3692200			12940	8339	8321	8353	13135	13135					0.06187892439152165
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.78326416015625	2	490.783513	979.552473	-0.5045	-0.0002476	0.015918	7.8123E-06	-0.48858	-0.00023979	490.78372791844083	32.259	1.0322	32.259	32.087	33.119	0					69	26	5	0	0	0	0.028876	2	11794	11794;11984		110.12	30.407	1	10743000			12941	8339	8321	8353	13136;13137	13136					0.06187892439152165
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.78338623046875	2	490.783513	979.552473	-1.3106	-0.00064321	0.62953	0.00030896	-0.68104	-0.00033424	490.78392461855987	32.013	0.32806	32.013	31.924	32.252	0					29	13	3	0	0	0	0.12239	1	10635	10635		74.255	20.904	1	722660			12942	8339	8321	8353	13138	13138					0.06187892439152165
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.5247802734375	3	327.524767	979.552473	1.5138	0.0004958	-1.8582	-0.00060859	-0.34439	-0.0001128	327.52425188885724	32.182	0.48583	32.182	32.081	32.567	0					29	11	5	0	0	0	0.2873	1	12218	12218		67.494	33.321	1	1229500			12943	8339	8321	8353	13139	13139					0.06187892439152165
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7834167480469	2	490.783513	979.552473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.184	1	32.184	31.684	32.684	0								0	0	0	0.00097936	1	12209	12209		127.46	25.861	1				12944	8339	8321	8353	13140	13140					0.06187892439152165
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.5246276855469	3	327.524767	979.552473	-0.025939	-8.4958E-06	-0.48332	-0.0001583	-0.50926	-0.0001668	327.5246961352077	31.995	0.32851	31.995	31.886	32.214	0					20	9	4	0	0	0	0.47038	1	11071	11071		51.193	19.663	1	830160			12945	8339	8321	8353	13141	13141					0.06187892439152165
GGMSIFLKK	9	Unmodified	_GGMSIFLKK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	327.5246887207031	3	327.524767	979.552473	0.0064267	2.1049E-06	-0.31649	-0.00010366	-0.31007	-0.00010155	327.5247378753664	32.178	0.52203	32.178	32.068	32.59	0					28	10	4	0	0	0	0.2873	1	12093	12093		67.494	29.682	1	3048300			12946	8339	8321	8353	13142	13142					0.06187892439152165
GGMSIFLKK	9	Oxidation (M)	_GGM(Oxidation (M))SIFLKK_		GGM(1)SIFLKK		GGM(46)SIFLKK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.8563232421875	3	332.856406	995.547388	0.38951	0.00012965	-0.66851	-0.00022252	-0.279	-9.2867E-05	332.85617897697426	24.517	0.51549	24.517	24.262	24.778	0					21	10	3	0	0	0	0.35021	1	8535	8535		45.972	12.457	1	293540			12947	8339	8321	8354	13143	13143		336			0.04943588576543334
GGMSIFLKK	9	Oxidation (M)	_GGM(Oxidation (M))SIFLKK_		GGM(1)SIFLKK		GGM(62)SIFLKK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.8563537597656	3	332.856406	995.547388	-0.0073205	-2.4367E-06	-0.18384	-6.1191E-05	-0.19116	-6.3628E-05	332.8563465288369	24.381	0.74969	24.381	24.229	24.979	0					30	15	3	0	0	0	0.19605	1	8395	8395		62.107	19.711	1	289260			12948	8339	8321	8354	13144	13144		336			0.04943588576543334
GGPARARP	8	Unmodified	_GGPARARP_					0	0	0		ENST00000375190.8_1_19:3606541-3606769:-|nuORF	ENST00000375190.8_1_19:3606541-3606769:-|nuORF	ENST00000375190.8_1_19:3606541-3606769:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2247314453125	2	391.225011	780.435469	0.34168	0.00013367	-0.16073	-6.288E-05	0.18095	7.0793E-05	391.2248343886734	43.882	2.0593	43.882	43.246	45.306	0					281	113	3	0	0	0	0.75243	1	17042	17042		26.796	0	1	459120			12949	9027	8322	8355	13145	13145					0.0364691533441146
GGPARARP	8	Unmodified	_GGPARARP_					0	0	0		ENST00000375190.8_1_19:3606541-3606769:-|nuORF	ENST00000375190.8_1_19:3606541-3606769:-|nuORF	ENST00000375190.8_1_19:3606541-3606769:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.22491455078125	2	391.225011	780.435469	0.47511	0.00018587	-0.39742	-0.00015548	0.077688	3.0394E-05	391.2247545235068	43.634	2.4442	43.634	43.211	45.655	0					235	95	4	0	0	0	0.8006	1	17632	17632		20.482	0	1	1576700			12950	9027	8322	8355	13146	13146					0.0364691533441146
GGPGGGESGG	10	Unmodified	_GGPGGGESGG_					0	0	0			REV__TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant	REV__TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.15338134765625	2	366.151375	730.288196	3.1608	0.0011573	-1.6272	-0.00059579	1.5337	0.00056155	366.15232498188897	45.484	0.25909	45.484	45.387	45.646	0					22	9	3	0	0	0	0.69166	1	18232	18232		23.042	2.5607	1	162780	+		12951	13519	8323	8356	13147	13147					-0.08773646061024465
GGPHPRSPSRH	11	Unmodified	_GGPHPRSPSRH_					0	0	0			REV__SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	REV__SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.8075561523438	2	592.80522	1183.59589	1.3824	0.0008195	1.5467	0.00091687	2.9291	0.0017364	592.8059586171778	30.978	0.2001	30.978	30.909	31.109	0					7	4	2	0	0	0	0.70609	1	11640	11640		27.047	1.4733	1	62776	+		12952	17196	8324	8357	13148	13148					0.011432182606540664
GGPLGTAKLQ	10	Unmodified	_GGPLGTAKLQ_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2738342285156	2	471.274367	940.53418	-2.3586	-0.0011116	2.0016	0.00094332	-0.35699	-0.00016824	471.2754434627549	31.067	0.22477	31.067	30.974	31.199	0					10	6	2	0	0	0	0.61187	1	10663	10663		32.812	0.85756	1	59837			12953	6771	8325	8358	13149	13149					0.061534737887996016
GGPLKLDVEG	10	Unmodified	_GGPLKLDVEG_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-6|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-6|ARHGAP19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7713623046875	2	492.771657	983.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.508	1	37.508	37.008	38.008	0								0	0	0	0.38475	1	14224	14224		35.152	1.2304	1		+		12954	17561	8326	8359	13150	13150					0.03633750206336117
GGPVPSPQTY	10	Unmodified	_GGPVPSPQTY_					0	0	0		nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7481994628906	2	501.748182	1001.48181	1.13	0.00056699	-0.95675	-0.00048005	0.17328	8.6944E-05	501.7476920248821	32.111	0.26711	32.111	31.952	32.219	0					9	5	2	0	0	0	0.536	1	12089	12089		41.427	0.64845	1	464500			12955	11827	8327	8360	13151	13151					-0.018871093448069587
GGPWSLLD	8	Unmodified	_GGPWSLLD_					0	0	0			REV__ENST00000267984.3_1_15:81293492-81293675:+|nuORF	REV__ENST00000267984.3_1_15:81293492-81293675:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7135314941406	2	422.713611	843.412668	-0.85761	-0.00036252	0.65039	0.00027493	-0.20722	-8.7593E-05	422.71385771182236	29.481	0.65976	29.481	29.351	30.011	0					41	16	4	0	0	0	0.64096	1	10518	10518		42.474	0	1	7805200	+		12956	18086	8328	8361	13152	13152					-0.015301485737154508
GGQGGLPVPQ	10	Unmodified	_GGQGGLPVPQ_					0	0	0			REV__ZNF609|p.R194Q|1|0.34|ENSG00000180357|chr15:64500000-64500000|G/A|missense_variant	REV__ZNF609|p.R194Q|1|0.34|ENSG00000180357|chr15:64500000-64500000|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.2409362792969	2	455.243067	908.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.172	1	14.172	13.672	14.672	0								0	0	0	0.40862	1	3021	3021		27.882	2.4321	1		+		12957	22330	8329	8362	13153	13153					0.013683277206041566
GGQLLHAVTY	10	Unmodified	_GGQLLHAVTY_					0	0	0			REV__ENST00000514104.5_1_5:145522433-145523105:-|nuORF	REV__ENST00000514104.5_1_5:145522433-145523105:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7871704101562	2	529.785099	1057.55564	0.4516	0.00023925	2.0238	0.0010722	2.4754	0.0013114	529.786910182291	26.165	0.43046	26.165	25.898	26.328	0					40	14	4	0	0	0	0.30737	1	7864	7864		66.429	3.123	1	467910	+		12958	14717	8330	8363	13154	13154					0.029168588175252808
GGRGGQGQEFK	11	Unmodified	_GGRGGQGQEFK_					0	0	0		ENST00000555004.2_3_14:96555950-96556580:+|nuORF	ENST00000555004.2_3_14:96555950-96556580:+|nuORF	ENST00000555004.2_3_14:96555950-96556580:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7807006835938	2	560.778336	1119.54212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.626	1	11.626	11.126	12.126	0								0	0	0	0.45674	1	2295	2295		17.468	0.10304	1				12959	10652	8331	8364	13155	13155					-0.01286998961700192
GGRGRALVF	9	Unmodified	_GGRGRALVF_					0	0	0			REV__ENST00000484621.1_1_9:36401018-36401120:-|nuORF	REV__ENST00000484621.1_1_9:36401018-36401120:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.77679443359375	2	466.774868	931.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.968	1	41.968	41.468	42.468	0								0	0	0	0.27166	1	16490	16490		40.573	5.3719	1		+		12960	19640	8332	8365	13156	13156					0.06667732948358207
GGRKGRGP	8	Unmodified	_GGRKGRGP_					0	0	0			REV__ENST00000553268.5_1_14:77787511-77793341:+|nuORF	REV__ENST00000553268.5_1_14:77787511-77793341:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.7318420410156	2	392.730461	783.446369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.35	1	19.35	18.85	19.85	0								0	0	0	1.7419	1	5224	5224		20.482	0	1		+		12961	20218	8333	8366	13157	13157					0.04598317708700961
GGRKPHARGA	10	Unmodified	_GGRKPHARGA_					0	0	0		ENST00000520083.1_1_9:36923038-36923170:-|nuORF	ENST00000520083.1_1_9:36923038-36923170:-|nuORF	ENST00000520083.1_1_9:36923038-36923170:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7874450683594	2	503.786299	1005.55804	2.9292	0.0014757	0.2945	0.00014837	3.2237	0.0016241	503.7859619344003	22.999	1.6624	22.999	21.555	23.218	0					55	33	2	0	0	0	0.44469	1	7703	7703		51.335	6.8044	1	1288600			12962	10295	8334	8367	13158	13158					0.0554875206584029
GGSLAPLA	8	Unmodified	_GGSLAPLA_					0	0	0		nc|ENSG00000137204|Q9Y694-4|SLC22A7;nc|ENSG00000137204|Q9Y694-3|SLC22A7;nc|ENSG00000137204|Q9Y694-2|SLC22A7;ENSG00000137204|ENST00000372585|SLC22A7	nc|ENSG00000137204|Q9Y694-4|SLC22A7	nc|ENSG00000137204|Q9Y694-4|SLC22A7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1976013183594	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.255	1	56.255	55.755	56.755	0								0	0	0	1.7419	1	21130	21130		21.702	0	1				12963	4150	8335	8368	13159	13159					0.02582483743128705
GGSLYKAK	8	Unmodified	_GGSLYKAK_					0	0	0			REV__tr|U7SJU5|U7SJU5_FUSNUPhosphonateimportATP-bindingproteinPhnCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02091PE=4SV=1	REV__tr|U7SJU5|U7SJU5_FUSNUPhosphonateimportATP-bindingproteinPhnCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02091PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.237060546875	2	412.237253	822.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.476	1	16.476	15.976	16.976	0								0	0	0	1.7419	1	3914	3914		35.618	10.168	1		+		12964	21745	8336	8369	13160	13160					0.04162130697284283
GGSRGGGG	8	Unmodified	_GGSRGGGG_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;chr12:54282823-54283827|481|40.36|0.0|21.94|+|2|HNRNPA1,HNRNPA1|1;ENST00000375750.7_1_6:31707746-31708989:+|nuORF;ENST00000456883.6_3_12:133405053-133405404:-|nuORF;ENST00000425703.5_1_6:31707794-31708989:+|nuORF;KRT1|p.Y525H|1|0.33|ENSG00000167768|chr12:52675555-52675555|A/G|missense_variant;tr|U7STX4|U7STX4_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01600PE=4SV=1;ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000167768|ENST00000252244|KRT1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.2780151367188	1	604.279763	603.272486	-1.9073	-0.0011526	-1.3196	-0.00079742	-3.227	-0.00195	604.279072557949	21.068	0.19054	21.068	21.009	21.2	0					6	4	2	0	0	0	0.77697	1	6066	6066		4.3163	0	1	181090		+	12965	517;630	8337	8370	13161	13161					-0.045018877874213103
GGSYNDFGNY	10	Unmodified	_GGSYNDFGNY_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;chr12:54282823-54283827|481|40.36|0.0|21.94|+|2|HNRNPA1,HNRNPA1|1;chr12:54282611-54283827|482|82.07|0.0|22.97|+|2|HNRNPA1,HNRNPA1|1;chr12:54283228-54283827|474|19.73|0.0|20.91|+|2|HNRNPA1,HNRNPA1|1;chr12:54283225-54283827|478|34.15|0.0|21.7|+|2|HNRNPA1,HNRNPA1|1;chr12:54283132-54283827|480|49.51|0.0|22.24|+|2|HNRNPA1,HNRNPA1|1;chr12:54282841-54283827|477|44.72|0.0|22.09|+|2|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|481|25.33|0.0|21.27|+|2|HNRNPA1,HNRNPA1|1;chr12:54282662-54283827|481|547.88|0.0|25.71|+|2|HNRNPA1,HNRNPA1|1;chr12:54282641-54283827|483|320.26|0.0|24.93|+|2|HNRNPA1,HNRNPA1|1;ENST00000450405.1_1_2:207284139-207284406:-|nuORF;ENST00000560893.1_1_15:35693406-35693832:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000560893.1_1_15:35693406-35693832:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2158813476562	2	547.214703	1092.41485	1.8966	0.0010379	-0.54267	-0.00029695	1.354	0.00074091	547.2144201582641	39.692	0.19398	39.692	39.602	39.796	0					7	4	2	0	0	0	0.57211	1	15720	15720		37.508	5.5533	1	113940			12966	517;10696	8338	8371	13162	13162					-0.12765764626578857
GGTAKLPHQRL	11	Unmodified	_GGTAKLPHQRL_					0	0	0		ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.3438720703125	2	589.343646	1176.67274	-0.17023	-0.00010033	0.80585	0.00047492	0.63562	0.0003746	589.343936571322	51.614	0.52295	51.614	51.342	51.865	0					52	32	2	0	0	0	0.575	1	16725	16725		38.754	8.1847	1	84699			12967	2049	8339	8372	13163	13163					0.09147016757128767
GGVALIWATY	10	Unmodified	_GGVALIWATY_					0	0	0		nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;SSH1|p.P350Lfs*30|1|0.49|ENSG00000084112|chr12:108800881-108800881|A/-|frameshift_variant;SSH1|p.A419Hfs*5|1|0.54|ENSG00000084112|chr12:108799095-108799095|T/-|frameshift_variant;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;SSH1|p.L973Tfs*23|1|0.28|ENSG00000084112|chr12:108788222-108788223|-/G|frameshift_variant;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7830200195312	2	525.784567	1049.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.602	1	44.602	44.102	45.102	0								0	0	0	0.4201	1	17348	17348		23.042	0	1				12968	1712	8340	8373	13164	13164					0.031786444485987886
GGVGIPTI	8	Unmodified	_GGVGIPTI_					0	0	0		CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000579316.5_1_17:80213289-80231257:-|nuORF;ENST00000584472.5_1_17:80213174-80231257:-|nuORF	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.21453857421875	2	357.213246	712.41194	3.0751	0.0010985	0.70653	0.00025238	3.7817	0.0013509	357.2134086296242	35.662	0.66564	35.662	35.501	36.166	0					35	13	3	0	0	0	0.79882	1	13772	13772		19.36	4.6959	1	2292900			12969	698	8341	8374	13165	13165					0.044230567772387985
GHARGKTV	8	Unmodified	_GHARGKTV_					0	0	0		nc|ENSG00000130347|Q8WWV3-2|RTN4IP1;ENSG00000130347|ENST00000369063|RTN4IP1;ENST00000493619.1_1_6:107019873-107020229:-|nuORF	nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2384338378906	2	413.238119	824.461684	1.0248	0.00042347	-0.29529	-0.00012203	0.72947	0.00030145	413.2379208148426	45.019	1.0978	45.019	44.671	45.769	0					122	65	2	0	0	0	0.79426	1	16910	16910		16.473	2.6978	1	251160			12970	3636	8342	8375	13166	13166					0.04243184505901354
GHLARSTKR	9	Unmodified	_GHLARSTKR_					0	0	0		ENSG00000123569|ENST00000217926|H2BW1;nc|ENSG00000123569|Q7Z2G1|H2BW1;nc|ENSG00000123569|Q7Z2G1-1|H2BW1	ENSG00000123569|ENST00000217926|H2BW1	ENSG00000123569|ENST00000217926|H2BW1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.3038330078125	2	513.301781	1024.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.816	1	42.816	42.316	43.316	0								0	0	0	0.36266	1	16200	16200		21.96	1.4781	1				12971	3328	8343	8376	13167	13167					0.07769905380087039
GHLEDGAAD	9	Unmodified	_GHLEDGAAD_					0	0	0		ENST00000496390.5_1_X:153928333-153979808:-|nuORF;nc|ENSG00000160219|Q8WWW8-3|GAB3;ENSG00000160219|ENST00000424127|GAB3	ENST00000496390.5_1_X:153928333-153979808:-|nuORF	ENST00000496390.5_1_X:153928333-153979808:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.6902770996094	2	442.690864	883.367175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.701	1	14.701	14.201	15.201	0								0	0	0	0.35899	1	3164	3164		23.042	1.0826	1				12972	5351	8344	8377	13168	13168					-0.07917418826764333
GHLNELRHQQ	10	Unmodified	_GHLNELRHQQ_					0	0	0			REV__ENST00000441634.5_1_2:85824501-85824624:+|nuORF	REV__ENST00000441634.5_1_2:85824501-85824624:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.2151184082031	3	411.214532	1230.62177	0.87222	0.00035867	0.12025	4.945E-05	0.99247	0.00040812	411.2145951822943	12.97	0.38569	12.97	12.773	13.159	0					21	8	4	0	0	0	0.60281	1	2861	2861		33.922	0	1	2274200	+		12973	16283	8345	8378	13169	13169					0.015680677122645648
GHPLLYWKQ	9	Unmodified	_GHPLLYWKQ_					0	0	0		ENST00000523272.1_1_22:22380511-22380834:+|nuORF	ENST00000523272.1_1_22:22380511-22380834:+|nuORF	ENST00000523272.1_1_22:22380511-22380834:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.3115234375	2	571.311284	1140.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.471	1	14.471	13.971	14.971	0								0	0	0	0.37496	1	2982	2982		18.324	2.6826	1				12974	10334	8346	8379	13170	13170					0.04333441951121131
GHPVGETLYLD	11	Unmodified	_GHPVGETLYLD_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.8681945800781	3	400.868027	1199.58225	-0.8548	-0.00034266	1.0241	0.00041053	0.16931	6.7871E-05	400.8686620188726	28.243	0.1524	28.243	28.166	28.319	0					8	5	2	0	0	0	0.7767	1	9097	9097		20.03	1.7684	1	47152	+		12975	16065	8347	8380	13171	13171					-0.009554970818271613
GHPVLHPR	8	Unmodified	_GHPVLHPR_					0	0	0		MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.76043701171875	2	456.761761	911.508969	0.75662	0.00034559	-2.2659	-0.001035	-1.5093	-0.00068938	456.76061322989256	38.318	0.26867	38.318	38.133	38.402	0					14	10	2	0	0	0	0.72892	1	14558	14558		29.842	0.69198	1	41386			12976	11390	8348	8381	13172	13172					0.04967463776893055
GHQLLQRR	8	Unmodified	_GHQLLQRR_					0	0	0		ENST00000603731.1_2_7:35734046-35735162:-|nuORF	ENST00000603731.1_2_7:35734046-35735162:-|nuORF	ENST00000603731.1_2_7:35734046-35735162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53369140625	3	336.533425	1006.57845	0.53459	0.00017991	1.7879	0.00060168	2.3225	0.00078159	336.53386848327443	38.33	0.46636	38.33	38.156	38.623	0					25	16	2	0	0	0	0.79882	1	14978	14978		15.642	4.7763	1	207270			12977	11055	8349	8382	13173	13173					0.0754192272564751
GHRDLILRTP	10	Unmodified	_GHRDLILRTP_					0	0	0			REV__ENSG00000142233|ENST00000270235|NTN5	REV__ENSG00000142233|ENST00000270235|NTN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.3424682617188	2	589.343646	1176.67274	-0.15873	-9.3549E-05	-0.40481	-0.00023857	-0.56354	-0.00033212	589.3432264964811	51.572	0.48897	51.572	51.373	51.862	0					50	30	2	0	0	0	0.64162	1	15445	15445		29.17	3.7199	1	95519	+		12978	15145	8350	8383	13174	13174					0.09147016757151505
GHRLKGGG	8	Unmodified	_GHRLKGGG_					0	0	0			REV__ENST00000416860.2_2_1:2486170-2486278:-|nuORF	REV__ENST00000416860.2_2_1:2486170-2486278:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2250671386719	2	391.225011	780.435469	-0.12552	-4.9105E-05	0.28296	0.0001107	0.15745	6.1598E-05	391.2250495168464	44.302	1.5378	44.302	43.399	44.937	0					131	89	2	0	0	0	0.79176	1	16611	16611		21.702	6.0661	1	196140	+		12979	19037	8351	8384	13175	13175					0.036469153344341976
GHRLKGGG	8	Unmodified	_GHRLKGGG_					0	0	0			REV__ENST00000416860.2_2_1:2486170-2486278:-|nuORF	REV__ENST00000416860.2_2_1:2486170-2486278:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.2245788574219	2	391.225011	780.435469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.02	1	42.02	41.52	42.52	0								0	0	0	1.7419	1	13894	13894		26.796	1.3459	1		+		12980	19037	8351	8384	13176	13176					0.036469153344341976
GHSLSTWGDW	10	Unmodified	_GHSLSTWGDW_					0	0	0		SLC40A1|p.R40W|1|0.1|ENSG00000138449|chr2:189575314-189575314|G/A|missense_variant	SLC40A1|p.R40W|1|0.1|ENSG00000138449|chr2:189575314-189575314|G/A|missense_variant	SLC40A1|p.R40W|1|0.1|ENSG00000138449|chr2:189575314-189575314|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.2520141601562	2	573.254163	1144.49377	-1.4682	-0.00084164	-2.2478	-0.0012886	-3.716	-0.0021302	573.253097847761	24.097	0.14964	24.097	24.023	24.172	0					9	3	3	0	0	0	0.64178	1	7483	7483		29.15	2.4566	1	224200			12981	22413	8352	8385	13177	13177					-0.072694926016311
GHSTLQGTVK	10	Unmodified	_GHSTLQGTVK_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2802734375	2	514.28018	1026.54581	-1.6086	-0.00082726	1.5523	0.00079829	-0.056318	-2.8963E-05	514.2810786219691	17.95	0.20024	17.95	17.85	18.05	0					8	4	3	0	0	0	0.17315	1	4570	4570		82.75	8.4954	1	1734000			12982	6783	8353	8386	13178	13178					0.0335967081216495
GHVTVVVKY	9	Unmodified	_GHVTVVVKY_					0	0	0			REV__ENSG00000150787|ENST00000280362|PTS	REV__ENSG00000150787|ENST00000280362|PTS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2912902832031	2	501.292559	1000.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.03	1	48.03	47.53	48.53	0								0	0	0	0.35899	1	15166	15166		23.042	3.6825	1		+		12983	15455	8354	8387	13179	13179					0.07030350685522535
GHYNASSGKF	10	Unmodified	_GHYNASSGKF_					0	0	0		ENSG00000145861|ENST00000652664|C1QTNF2	ENSG00000145861|ENST00000652664|C1QTNF2	ENSG00000145861|ENST00000652664|C1QTNF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2506713867188	2	534.24888	1066.48321	0.29031	0.0001551	3.2843	0.0017546	3.5746	0.0019097	534.2506875163263	11.19	0.16614	11.19	11.081	11.247	0					10	5	3	0	0	0	0.71484	1	2230	2230		19.997	2.6318	1	349550			12984	4697	8355	8388	13180	13180					-0.04737475256047219
GIAAVHRN	8	Unmodified	_GIAAVHRN_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2383117675781	2	419.238119	836.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.959	1	41.959	41.459	42.459	0								0	0	0	1.7419	1	16487	16487		14.664	0.88877	1		+		12985	17693	8356	8389	13181	13181					0.03691184505896672
GIAGILKW	8	Unmodified	_GIAGILKW_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;PREP|p.G459Rfs*58|1|0.25|ENSG00000085377|chr6:105288837-105288838|-/T|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.26678466796875	2	429.265813	856.517074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.058	1	37.058	36.558	37.558	0								0	0	0	1.7419	1	14455	14455		29.842	1.5873	1				12986	1726	8357	8390	13182	13182					0.08307597973657721
GIAGSLTNK	9	Unmodified	_GIAGSLTNK_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7452697753906	2	430.745442	859.476331	-0.24836	-0.00010698	-0.51291	-0.00022093	-0.76127	-0.00032791	430.74529387753216	23.893	0.16657	23.893	23.82	23.986	0					13	6	3	0	0	0	0.047412	1	6966	6966		96.19	22.216	1	273080			12987	6556	8358	8391	13183	13183					0.04097211863370376
GIAGSLTNK	9	Unmodified	_GIAGSLTNK_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7451171875	2	430.745442	859.476331	0.78085	0.00033635	-1.4098	-0.00060728	-0.62899	-0.00027093	430.74489837860614	24.227	0.14657	24.227	24.131	24.277	0					7	3	3	0	0	0	0.07136	1	8117	8117		87.696	13.441	1	379430			12988	6556	8358	8391	13184	13184					0.04097211863370376
GIAGSLTNK	9	Unmodified	_GIAGSLTNK_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7452697753906	2	430.745442	859.476331	-0.52626	-0.00022669	0.16905	7.2819E-05	-0.35721	-0.00015387	430.74553951298117	24.212	0.23012	24.212	24.079	24.309	0					11	5	3	0	0	0	0.010494	1	8128	8128		139.97	23.067	1	1519700			12989	6556	8358	8391	13185	13185					0.04097211863370376
GIAGSLTNK	9	Unmodified	_GIAGSLTNK_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.74530029296875	2	430.745442	859.476331	-0.85214	-0.00036706	0.29132	0.00012548	-0.56083	-0.00024157	430.74559910664675	23.936	0.17233	23.936	23.854	24.026	0					13	6	3	0	0	0	0.032052	1	7248	7248		107.01	30.233	1	401970			12990	6556	8358	8391	13186	13186					0.04097211863370376
GIAGSLTNK	9	Unmodified	_GIAGSLTNK_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7459716796875	2	430.745442	859.476331	-0.35219	-0.0001517	0.91326	0.00039338	0.56107	0.00024168	430.7457394100533	23.963	0.15885	23.963	23.888	24.047	0					10	4	3	0	0	0	0.035062	1	7392	7392		104.06	21.816	1	212610			12991	6556	8358	8391	13187	13187					0.04097211863370376
GIAGSLTNK	9	Unmodified	_GIAGSLTNK_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7452697753906	2	430.745442	859.476331	2.5345	0.0010917	-2.561	-0.0011031	-0.026483	-1.1407E-05	430.7444281440663	24.106	0.41754	24.106	23.996	24.414	0					16	8	4	0	0	0	0.0040894	1	8278	8278		162.25	45.349	1	1894800			12992	6556	8358	8391	13188	13188					0.04097211863370376
GIALAYGSLLL	11	Unmodified	_GIALAYGSLLL_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.2218017578125	3	364.221742	1089.6434	0.47672	0.00017363	-0.66063	-0.00024061	-0.18391	-6.6984E-05	364.22153740545497	41.488	0.1955	41.488	41.444	41.64	0					22	9	3	0	0	0	0.57428	1	15768	15768		40.058	14.484	1	313130			12993	2106	8359	8392	13189	13189					0.10216059688286805
GIANATPIPG	10	Unmodified	_GIANATPIPG_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;TTBK2|p.N876Kfs*2|2|0.34|ENSG00000128881|chr15:42752618-42752619|-/T|frameshift_variant;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.7530517578125	2	455.753267	909.491981	-0.13844	-6.3095E-05	-0.369	-0.00016817	-0.50744	-0.00023127	455.75313671403484	29.482	0.25145	29.482	29.381	29.633	0					10	5	2	0	0	0	0.41335	1	10956	10956		54.776	1.4249	1	226410			12994	3567	8360	8393	13190	13190					0.033614983804341136
GIANITALK	9	Unmodified	_GIANITALK_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7790832519531	2	450.779285	899.544017	0.64228	0.00028953	-1.4095	-0.00063538	-0.76724	-0.00034586	450.7787570667398	34.997	0.17174	34.997	34.915	35.087	0					7	4	2	0	0	0	0.28897	1	13098	13098		51.193	7.0759	1	244790			12995	7486	8361	8394	13191	13191					0.09022661794176656
GIANRARCVY	10	Unmodified	_GIANRARCVY_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7935180664062	2	561.795475	1121.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.485	1	21.485	20.985	21.985	0								0	0	0	0.4201	1	6237	6237		23.042	1.0826	1		+		12996	21069	8362	8395	13192	13192					0.020471259255373297
GIAQPGVL	8	Unmodified	_GIAQPGVL_					0	0	0		ABCB11|p.I82V|1|0.06|ENSG00000073734|chr2:169013417-169013417|T/C|missense_variant;ABCB11|p.F83Lfs*4|1|0.32|ENSG00000073734|chr2:169013412-169013412|A/-|frameshift_variant;ABCB11|p.A384Cfs*12|1|0.09|ENSG00000073734|chr2:168979913-168979914|-/A|frameshift_variant;ABCB11|p.Q1053Nfs*44|1|0.2|ENSG00000073734|chr2:168932434-168932434|A/-|frameshift_variant;ABCB11|p.K1070Nfs*27|1|0.17|ENSG00000073734|chr2:168932380-168932380|T/-|frameshift_variant;ABCB11|p.V1293Wfs*2|2|0.26|ENSG00000073734|chr2:168923711-168923711|C/-|frameshift_variant;ENSG00000073734|ENST00000650372|ABCB11	ABCB11|p.I82V|1|0.06|ENSG00000073734|chr2:169013417-169013417|T/C|missense_variant	ABCB11|p.I82V|1|0.06|ENSG00000073734|chr2:169013417-169013417|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.7265319824219	2	377.726521	753.438489	0.78012	0.00029467	-1.1455	-0.00043267	-0.36534	-0.000138	377.72610341232576	30.684	0.28511	30.684	30.537	30.822	0					10	6	2	0	0	0	0.64096	1	11078	11078		42.474	3.453	1	265190			12997	13	8363	8396	13193	13193					0.05190745668573982
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7581787109375	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.17	1	22.17	21.67	22.67	0								0	0	0	0.17308	1	6227	6227		67.494	18.052	1				12998	5846	8364	8397	13194	13194					0.046934810348602696
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7584228515625	2	452.758549	903.502546	-0.52816	-0.00023913	-0.0095937	-4.3436E-06	-0.53775	-0.00024347	452.7587718555597	22.51	0.28024	22.51	22.323	22.604	0					9	6	2	0	0	0	0.0058631	1	7313	7313		163.15	70.96	1	788780			12999	5846	8364	8397	13195	13195					0.046934810348602696
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7584533691406	2	452.758549	903.502546	-1.1958	-0.0005414	-1.4045	-0.00063592	-2.6003	-0.0011773	452.75891981297224	22.203	0.29394	22.203	22.007	22.3	0					14	9	2	0	0	0	0.536	1	6502	6502		41.427	9.8968	1	202790			13000	5846	8364	8397	13196	13196					0.046934810348602696
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.75811767578125	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.26	1	22.26	21.76	22.76	0								0	0	0	0.06258	1	6600	6600		87.696	10.922	1				13001	5846	8364	8397	13197	13197					0.046934810348602696
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.75836181640625	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.39	1	22.39	21.89	22.89	0								0	0	0	0.031047	1	7440	7440		96.034	41.257	1				13002	5846	8364	8397	13198	13198					0.046934810348602696
GIATTFINK	9	Unmodified	_GIATTFINK_					0	0	0		ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.77655029296875	2	482.776742	963.538931	0.066135	3.1929E-05	-0.52992	-0.00025583	-0.46378	-0.0002239	482.77648926453315	33.458	0.35123	33.458	33.331	33.682	0					16	12	2	0	0	0	0.1115	1	10874	10874		76.774	15.802	1	206420			13003	6949	8365	8398	13199	13199					0.05570357931560466
GIATTFINK	9	Unmodified	_GIATTFINK_					0	0	0		ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7764892578125	2	482.776742	963.538931	-0.1273	-6.1457E-05	-0.31228	-0.00015076	-0.43958	-0.00021222	482.776704843325	33.695	0.38986	33.695	33.609	33.998	0					14	10	3	0	0	0	0.032052	1	12472	12472		107.01	30.233	1	735360			13004	6949	8365	8398	13200	13200					0.05570357931560466
GIATTFINK	9	Unmodified	_GIATTFINK_					0	0	0		ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7763671875	2	482.776742	963.538931	-1.2955	-0.00062544	0.79992	0.00038619	-0.49558	-0.00023925	482.77713394394124	33.512	0.37441	33.512	33.411	33.785	0					23	14	3	0	0	0	0.13267	1	11233	11233		71.877	20.542	1	366710			13005	6949	8365	8398	13201	13201					0.05570357931560466
GIATTFINK	9	Unmodified	_GIATTFINK_					0	0	0		ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7766418457031	2	482.776742	963.538931	0.68466	0.00033054	-0.95448	-0.0004608	-0.26982	-0.00013026	482.7762413698207	33.705	0.40707	33.705	33.605	34.012	0					22	10	3	0	0	0	0.035062	1	12906	12906		104.06	29.802	1	1655100			13006	6949	8365	8398	13202	13202					0.05570357931560466
GIATTFINK	9	Unmodified	_GIATTFINK_					0	0	0		ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	ENST00000505081.5_1_5:176938794-176940626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.77667236328125	2	482.776742	963.538931	0.88809	0.00042875	-0.76995	-0.00037171	0.11815	5.7038E-05	482.7764560963132	33.642	0.26747	33.642	33.432	33.7	0					13	5	4	0	0	0	0.032052	1	12818	12818		107.01	27.295	1	1227700			13007	6949	8365	8398	13203	13203					0.05570357931560466
GICALLFEN	9	Unmodified	_GICALLFEN_					0	0	0		tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1	tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1	tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2474670410156	2	490.249503	978.484453	3.4885	0.0017103	-1.555	-0.00076233	1.9336	0.00094793	490.248575472412	24.814	0.3939	24.814	24.562	24.956	0					22	13	3	0	0	0	0.50461	1	7597	7597		31.955	2.8053	1	662980			13008	22781	8366	8399	13204	13204					-0.0056497721150208235
GICKVKNID	9	Unmodified	_GICKVKNID_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7765808105469	2	495.276052	988.537551	-1.2384	-0.00061335	0.69419	0.00034382	-0.54422	-0.00026954	495.27641434961146	30.145	0.26891	30.145	29.984	30.252	0					24	10	3	0	0	0	0.39215	1	9832	9832		42.396	3.1433	1	696560			13009	4346	8367	8400	13205	13205					0.042824005711622704
GIDAILSGPK	10	Unmodified	_GIDAILSGPK_					0	0	0			REV__nc|ENSG00000250305|Q9P272-3|TRMT9B	REV__nc|ENSG00000250305|Q9P272-3|TRMT9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7818298339844	2	485.782025	969.549496	-0.26759	-0.00012999	-0.69348	-0.00033688	-0.96107	-0.00046687	485.7818333995774	29.967	1.0527	29.967	29.557	30.61	0					43	26	3	0	0	0	0.21754	1	10745	10745		77.318	6.5014	1	324090	+		13010	17727	8368	8401	13206	13206					0.06350340586004677
GIEQISKVY	9	Unmodified	_GIEQISKVY_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7865600585938	2	518.787307	1035.56006	0.51731	0.00026838	0.81194	0.00042123	1.3293	0.0006896	518.787518037204	28.045	0.26233	28.045	27.926	28.188	0					20	9	3	0	0	0	0.44593	1	8685	8685		37.812	1.3648	1	281840			13011	6845	8369	8402	13207	13207					0.043703232404368464
GIEQRLIAHFF	11	Unmodified	_GIEQRLIAHFF_					0	0	0			REV__ENST00000473795.1_1_7:87082258-87104781:-|nuORF	REV__ENST00000473795.1_1_7:87082258-87104781:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	665.8681640625	2	665.866954	1329.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.331	1	33.331	32.831	33.831	0								0	0	0	0.43806	1	11179	11179		19.104	0	1		+		13012	12034	8370	8403	13208	13208					0.0676845658840648
GIFGTVGAIV	10	Unmodified	_GIFGTVGAIV_					0	0	0			REV__nc|ENSG00000198513|Q8WXF7-2|ATL1	REV__nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7723693847656	2	467.273835	932.533118	0.64813	0.00030285	-2.4891	-0.0011631	-1.841	-0.00086023	467.2732101505837	35.151	0.93589	35.151	34.53	35.466	0					82	26	4	0	0	0	0.47621	1	13640	13640		47.916	1.9636	1	1241900	+		13013	17404	8371	8404	13209	13209					0.06415259419907215
GIFHNEDL	8	Unmodified	_GIFHNEDL_					0	0	0		RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant;RYR2|p.A2213Lfs*22|1|0.28|ENSG00000198626|chr1:237633654-237633654|A/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.I1830T|1|0.33|ENSG00000198626|chr1:237614617-237614617|T/C|missense_variant	RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant	RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.72723388671875	2	472.727249	943.439946	-0.57213	-0.00027046	0.017727	8.3798E-06	-0.55441	-0.00026208	472.7272336556825	31.777	0.81579	31.777	31.42	32.236	0					24	16	2	0	0	0	0.70055	1	11929	11929		33.516	4.366	1	98933			13014	7580	8372	8405	13210	13210					-0.03403665033329162
GIFIFNVV	8	Unmodified	_GIFIFNVV_					0	0	0		nc|ENSG00000130821|P48029-2|SLC6A8;ENST00000485324.1_1_X:152959908-152960666:+|nuORF;nc|ENSG00000130821|P48029-3|SLC6A8;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF	nc|ENSG00000130821|P48029-2|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF	ENST00000431994.5_1_16:32890029-32891910:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.76348876953125	2	454.765646	907.516739	0.72162	0.00032817	-3.2336	-0.0014705	-2.512	-0.0011424	454.76312461786347	28.473	0.40784	28.473	28.173	28.581	0					19	8	4	0	0	0	0.55361	1	10450	10450		54.765	4.7401	1	1096100			13015	11521;9505	8373	8406	13211	13211					0.05928178253805072
GIFKAYIQR	9	Unmodified	_GIFKAYIQR_					0	0	0		TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant	TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.3209228515625	2	548.319109	1094.62366	3.8167	0.0020928	-0.33167	-0.00018186	3.485	0.0019109	548.3188734231925	23.509	0.31487	23.509	23.401	23.716	0					12	6	3	0	0	0	0.37197	1	7994	7994		44.117	5.3107	1	815200			13016	1348	8374	8407	13212	13212					0.08013728468154113
GIFSWIFY	8	Unmodified	_GIFSWIFY_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2;REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3;REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7647705078125	2	516.763104	1031.51165	1.3452	0.00069512	-0.67554	-0.00034909	0.66961	0.00034603	516.7627925046177	35.835	0.20472	35.835	35.739	35.944	0					14	10	2	0	0	0	0.67475	1	11748	11748		37.028	1.8765	1	43636	+		13017	12092;13190;12091	8375	8408	13213	13213					-0.0028412560880042292
GIFVNKKTI	9	Unmodified	_GIFVNKKTI_					0	0	0			REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.5466003417969	3	340.546449	1018.61752	1.5639	0.00053258	-1.3278	-0.00045219	0.23605	8.0385E-05	340.5460655008562	33.143	0.20254	33.143	33.046	33.249	0					9	4	3	0	0	0	0.61124	1	12582	12582		20.947	0.95016	1	814850	+		13018	17202	8376	8409	13214	13214					0.10895210236662933
GIFVSPKSV	9	Unmodified	_GIFVSPKSV_					0	0	0		SLC7A9|p.N203Tfs*61|1|0.2|ENSG00000021488|chr19:32862214-32862214|T/-|frameshift_variant;ENSG00000021488|ENST00000023064|SLC7A9	SLC7A9|p.N203Tfs*61|1|0.2|ENSG00000021488|chr19:32862214-32862214|T/-|frameshift_variant	SLC7A9|p.N203Tfs*61|1|0.2|ENSG00000021488|chr19:32862214-32862214|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.77227783203125	2	467.273835	932.533118	-1.0161	-0.00047481	-0.80019	-0.00037391	-1.8163	-0.00084872	467.2738960496976	34.924	0.65812	34.924	34.473	35.131	0					76	29	3	0	0	0	0.39215	1	11833	11833		42.396	3.59	1	267120			13019	1104	8377	8410	13215	13215					0.06415259419907215
GIGGGAGNF	9	Unmodified	_GIGGGAGNF_					0	0	0			REV__nc|ENSG00000179168|Q86UU5-2|GGN	REV__nc|ENSG00000179168|Q86UU5-2|GGN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.1844482421875	2	375.182478	748.350402	3.2407	0.0012158	2.0374	0.00076439	5.2781	0.0019802	375.1832128870592	32.295	0.6197	32.295	32.186	32.806	0					19	12	3	0	0	0	0.47428	1	12176	12176		35.201	3.2459	1	380530	+		13020	16768	8378	8411	13216	13216					-0.03383874922042196
GIGPVPVISGA	11	Unmodified	_GIGPVPVISGA_					0	0	0		ACAA2|p.A299V|1|0.28|ENSG00000167315|chr18:49787349-49787349|G/A|missense_variant	ACAA2|p.A299V|1|0.28|ENSG00000167315|chr18:49787349-49787349|G/A|missense_variant	ACAA2|p.A299V|1|0.28|ENSG00000167315|chr18:49787349-49787349|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7843017578125	2	483.784567	965.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.92	1	18.92	18.42	19.42	0								0	0	0	0.30573	1	5755	5755		51.335	3.3759	1				13021	28	8379	8412	13217	13217					0.07042644448631563
GIGSVIARA	9	Unmodified	_GIGSVIARA_					0	0	0			REV__ENST00000449891.5_1_2:238903425-238973015:+|nuORF	REV__ENST00000449891.5_1_2:238903425-238973015:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.2558288574219	2	422.255977	842.497401	-0.18139	-7.6594E-05	-0.1556	-6.5701E-05	-0.33699	-0.0001423	422.2559088421738	25.265	0.4145	25.265	25.155	25.569	0					13	8	2	0	0	0	0.20551	1	8933	8933		60.972	2.19	1	2189000	+		13022	19304	8380	8413	13218	13218					0.06985221962895594
GIGSVLPLK	9	Unmodified	_GIGSVLPLK_					0	0	0		ENSG00000162437|ENST00000294428|RAVER2;nc|ENSG00000162437|Q9HCJ3-2|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.28411865234375	2	442.284203	882.553853	0.57396	0.00025385	-0.86666	-0.00038331	-0.2927	-0.00012946	442.28379398656705	39.404	0.36181	39.404	39.282	39.644	0					23	13	2	0	0	0	0.14603	1	14971	14971		68.787	14.022	1	293040			13023	5464	8381	8414	13219	13219					0.10787849799567084
GIGSVLPLK	9	Unmodified	_GIGSVLPLK_					0	0	0		ENSG00000162437|ENST00000294428|RAVER2;nc|ENSG00000162437|Q9HCJ3-2|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2840881347656	2	442.284203	882.553853	-1.1225	-0.00049647	1.1167	0.00049389	-0.005841	-2.5834E-06	442.28470451769914	39.168	0.23656	39.168	39.046	39.283	0					16	13	2	0	0	0	0.33044	1	13177	13177		47.657	10.498	1	63348			13024	5464	8381	8414	13220	13220					0.10787849799567084
GIGSVLPLK	9	Unmodified	_GIGSVLPLK_					0	0	0		ENSG00000162437|ENST00000294428|RAVER2;nc|ENSG00000162437|Q9HCJ3-2|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.28375244140625	2	442.284203	882.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.177	1	39.177	38.677	39.677	0								0	0	0	0.1219	1	13982	13982		66.429	20.477	1				13025	5464	8381	8414	13221	13221					0.10787849799567084
GIGTLAENLL	10	Unmodified	_GIGTLAENLL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.1943054199219	3	334.193963	999.560061	0.5197	0.00017368	0.493	0.00016476	1.0127	0.00033844	334.1942239163227	24.595	1.1043	24.595	23.721	24.825	0					41	25	3	0	0	0	0.64178	1	8295	8295		33.922	1.1711	1	534640			13026	3506	8382	8415	13222	13222					0.060263232404167866
GIGTWGIQGP	10	Unmodified	_GIGTWGIQGP_					0	0	0		ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.25860595703125	2	493.258717	984.50288	-0.50103	-0.00024714	0.19518	9.6274E-05	-0.30585	-0.00015086	493.2586656332815	19.163	0.4886	19.163	18.913	19.402	0					30	11	4	0	0	0	0.67098	1	5720	5720		25.574	1.3713	1	1001700			13027	10522	8383	8416	13223	13223					0.010009007547068904
GIGVLMGVL	9	Oxidation (M)	_GIGVLM(Oxidation (M))GVL_		GIGVLM(1)GVL		GIGVLM(60)GVL	0	0	1		tr|U7T3C5|U7T3C5_FUSNUDUF819domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00216PE=4SV=1	tr|U7T3C5|U7T3C5_FUSNUDUF819domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00216PE=4SV=1	tr|U7T3C5|U7T3C5_FUSNUDUF819domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00216PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7567443847656	2	437.756964	873.499375	-0.39145	-0.00017136	0.1513	6.6231E-05	-0.24015	-0.00010513	437.7571048598451	35.13	0.47222	35.13	34.943	35.416	0					25	12	3	0	0	0	0.21025	1	13149	13149		60.404	19.831	1	179380			13028	22962	8384	8417	13224	13224		827			0.057565146565025316
GIGVSKER	8	Unmodified	_GIGVSKER_					0	0	0			REV__tr|U7T5V7|U7T5V7_FUSNUGlutaconyl-CoAdecarboxylasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00404PE=4SV=1	REV__tr|U7T5V7|U7T5V7_FUSNUGlutaconyl-CoAdecarboxylasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00404PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2474670410156	2	423.245609	844.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.411	1	26.411	25.911	26.911	0								0	0	0	1.7419	1	9449	9449		38.806	1.647	1		+		13029	22191	8385	8418	13225	13225					0.04820631583231716
GIHFILGV	8	Unmodified	_GIHFILGV_					0	0	0		tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.2594909667969	2	428.257988	854.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.206	1	22.206	21.706	22.706	0								0	0	0	1.7419	1	6575	6575		24.504	0	1				13030	22645	8386	8419	13226	13226					0.0683531145662073
GIIAARCAIS	10	Unmodified	_GIIAARCAIS_					0	0	0		AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant;AGL|p.N1304Ifs*10|1|0.38|ENSG00000162688|chr1:99912472-99912472|A/-|frameshift_variant;AGL|p.K1407Nfs*8|1|0.39|ENSG00000162688|chr1:99915441-99915441|A/-|frameshift_variant;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7798767089844	2	487.776219	973.537886	2.5676	0.0012524	2.4309	0.0011857	4.9985	0.0024381	487.7773841403922	14.231	0.26807	14.231	14.073	14.341	0					9	5	2	0	0	0	0.20011	1	3503	3503		79.451	0	1	550510			13031	91	8387	8420	13227	13227					0.05005820291012242
GIIASTALPQ	10	Unmodified	_GIIASTALPQ_					0	0	0		nc|ENSG00000164007|Q8N6F1-2|CLDN19;nc|ENSG00000164007|Q8N6F1-3|CLDN19;ENSG00000164007|ENST00000296387|CLDN19	nc|ENSG00000164007|Q8N6F1-2|CLDN19	nc|ENSG00000164007|Q8N6F1-2|CLDN19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7816162109375	2	485.782025	969.549496	0.019728	9.5835E-06	-0.21818	-0.00010599	-0.19846	-9.6406E-05	485.78170779933276	29.712	0.30228	29.712	29.514	29.817	0					20	12	2	0	0	0	0.58189	1	9361	9361		36.447	0.82846	1	61088			13032	5637	8388	8421	13228	13228					0.0635034058598194
GIICKAAKQ	9	Carbamidomethyl (C)	_GIIC(Carbamidomethyl (C))KAAKQ_	GIIC(1)KAAKQ		GIIC(41)KAAKQ		0	1	0			REV__nc|ENSG00000121671|Q49AN0-2|CRY2	REV__nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.19049072265625	3	330.191788	987.553536	0.52547	0.0001735	-3.32	-0.0010962	-2.7946	-0.00092274	330.1907437560714	19.093	1.1518	19.093	18.671	19.823	0					45	28	2	0	0	0	0.41113	1	5553	5553		40.778	7.9657	1	425330	+		13033	14314	8389	8422	13229	13229	534				0.0592610680805592
GIIEGPKNGL	10	Unmodified	_GIIEGPKNGL_					0	0	0			REV__tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	REV__tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.28912353515625	2	499.287474	996.560395	2.9174	0.0014566	1.3758	0.0006869	4.2931	0.0021435	499.28808024881585	40.213	0.31165	40.213	40.08	40.392	0					12	7	2	0	0	0	0.48255	1	15937	15937		42.864	6.4175	1	487160	+		13034	21768	8390	8423	13230	13230					0.061977429602734446
GIIPRQAFS	9	Unmodified	_GIIPRQAFS_					0	0	0			REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.1907653808594	3	330.190665	987.550165	0.54553	0.00018013	0.1475	4.8703E-05	0.69303	0.00022883	330.1907293396079	19.367	1.2838	19.367	18.677	19.961	0					43	26	2	0	0	0	0.53064	1	6142	6142		29.17	3.596	1	198400	+		13035	21820	8391	8424	13231	13231					0.05589180025708629
GIIQAGWSGAP	11	Unmodified	_GIIQAGWSGAP_					0	0	0			REV__nc|ENSG00000185198|Q6UWY2|PRSS57	REV__nc|ENSG00000185198|Q6UWY2|PRSS57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7791137695312	2	528.777274	1055.53999	0.47319	0.00025021	3.2046	0.0016945	3.6778	0.0019448	528.7790403282719	24.238	0.11379	24.238	24.17	24.284	0					6	3	2	0	0	0	0.44025	1	7384	7384		39.253	0	1	85220	+		13036	21159	8392	8425	13232	13232					0.01444572300465552
GIIRGVTTK	9	Unmodified	_GIIRGVTTK_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.79766845703125	2	472.798009	943.581465	-0.33793	-0.00015977	-0.22579	-0.00010676	-0.56373	-0.00026653	472.79793690920116	19.339	0.11779	19.339	19.284	19.402	0					7	3	3	0	0	0	0.16806	1	4988	4988		65.465	0	1	82429	+		13037	17051	8393	8426	13233	13233					0.1074175305980134
GIKHELQA	8	Unmodified	_GIKHELQA_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.2528381347656	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.105	1	17.105	16.605	17.605	0								0	0	0	1.7419	1	4016	4016		38.806	0	1				13038	6381	8394	8427	13234	13234					0.040849181002727164
GIKPKALE	8	Unmodified	_GIKPKALE_					0	0	0			REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.2683410644531	2	428.268553	854.522553	-0.95195	-0.00040769	0.64603	0.00027667	-0.30592	-0.00013101	428.26877918507324	24.377	0.68604	24.377	24.053	24.739	0					48	22	3	0	0	0	0.7126	1	7555	7555		31.955	2.8053	1	376120	+		13039	12947	8395	8428	13235	13235					0.0894727676546836
GIKRPGQN	8	Unmodified	_GIKRPGQN_					0	0	0			REV__TMEM121|p.V41M|1|0.19|ENSG00000184986|chr14:105528955-105528955|G/A|missense_variant	REV__TMEM121|p.V41M|1|0.19|ENSG00000184986|chr14:105528955-105528955|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.25048828125	2	435.251226	868.487899	0.51493	0.00022412	-0.62034	-0.00027001	-0.10541	-4.5881E-05	435.2508128304243	53.449	0.21715	53.449	53.35	53.567	0					20	13	2	0	0	0	0.76283	1	15768	15768		25.45	2.4077	1	95486	+		13040	17002	8396	8429	13236	13236					0.04839453677379879
GILAAFLTQK	10	Unmodified	_GILAAFLTQK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.319580078125	2	531.321317	1060.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.788	1	15.788	15.288	16.288	0								0	0	0	0.41253	1	3494	3494		26.693	2.1737	1				13041	2180	8397	8430	13237	13237					0.1001919289108173
GILFAAQRSL	10	Unmodified	_GILFAAQRSL_					0	0	0		ENST00000297163.3_1_5:135469217-135469343:-|nuORF	ENST00000297163.3_1_5:135469217-135469343:-|nuORF	ENST00000297163.3_1_5:135469217-135469343:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.21343994140625	3	359.213469	1074.61858	1.272	0.00045691	-1.5287	-0.00054913	-0.25672	-9.2219E-05	359.2129774711992	25.608	0.22028	25.608	25.498	25.718	0					11	4	3	0	0	0	0.70274	1	8998	8998		21.686	0.73882	1	428870			13042	8465	8398	8431	13238	13238					0.0842542460554796
GILGSAIDRM	10	Unmodified	_GILGSAIDRM_					0	0	0			REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7792358398438	2	516.778959	1031.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.979	1	14.979	14.479	15.479	0								0	0	0	0.29716	1	3849	3849		51.335	1.8939	1		+		13043	17423	8399	8432	13239	13239					0.02885499082822207
GILHKDLK	8	Unmodified	_GILHKDLK_					0	0	0		ENSG00000171435|ENST00000339824|KSR2	ENSG00000171435|ENST00000339824|KSR2	ENSG00000171435|ENST00000339824|KSR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2872009277344	2	462.287277	922.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.811	1	31.811	31.311	32.311	0								0	0	0	1.7419	1	10998	10998		25.45	4.5032	1				13044	6294	8400	8433	13240	13240					0.09562368031095048
GILHRHFK	8	Unmodified	_GILHRHFK_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.8680419921875	3	336.534766	1006.58247	-1.913	-0.0006438	0.39889	0.00013424	-1.5141	-0.00050956	336.5348900993888	20.685	0.83604	20.685	20.04	20.876	0					48	19	3	0	0	0	0.79293	1	5733	5733		12.207	12.207	1	249740	+		13045	14120	8401	8434	13241	13241					0.07944012219365959
GILKCLVL	8	Unmodified	_GILKCLVL_					0	0	0		ENSG00000146263|ENST00000683635|MMS22L	ENSG00000146263|ENST00000683635|MMS22L	ENSG00000146263|ENST00000683635|MMS22L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7782287597656	2	429.777699	857.540846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.13	1	27.13	26.63	27.63	0								0	0	0	1.7419	1	8836	8836		65.897	2.919	1				13046	4721	8402	8435	13242	13242					0.10637695415812232
GILKPLPKK	9	Unmodified	_GILKPLPKK_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.3442687988281	2	497.344595	992.674637	-0.028551	-1.42E-05	-0.5587	-0.00027787	-0.58725	-0.00029207	497.3444101976765	20.888	0.16448	20.888	20.83	20.995	0					5	3	2	0	0	0	0.071197	1	6880	6880		87.754	43.638	1	174590			13047	1843	8403	8436	13243	13243					0.17800677513037044
GILKPLPKK	9	Unmodified	_GILKPLPKK_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.3446960449219	2	497.344595	992.674637	-0.70882	-0.00035253	0.92558	0.00046033	0.21676	0.00010781	497.34495990383476	20.9	0.21487	20.9	20.793	21.008	0					9	4	3	0	0	0	0.22377	1	6729	6729		58.782	23.164	1	380640			13048	1843	8403	8436	13244	13244					0.17800677513037044
GILLELAQL	9	Unmodified	_GILLELAQL_					0	0	0			REV__ENSG00000177427|ENST00000323019|MIEF2	REV__ENSG00000177427|ENST00000323019|MIEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.30303955078125	2	485.302593	968.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.438	1	34.438	33.938	34.938	0								0	0	0	0.28164	1	12189	12189		38.806	1.647	1		+		13049	16695	8404	8437	13245	13245					0.10508101625475774
GILSVPAVAM	10	Unmodified	_GILSVPAVAM_					0	0	0		nc|ENSG00000188549|Q6ZUT6|CCDC9B	nc|ENSG00000188549|Q6ZUT6|CCDC9B	nc|ENSG00000188549|Q6ZUT6|CCDC9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2765197753906	2	479.275521	956.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.565	1	46.565	46.065	47.065	0								0	0	0	0.40002	1	18630	18630		30.504	10.507	1				13050	11698	8405	8438	13246	13246					0.05648186202256511
GILVIDHIQ	9	Unmodified	_GILVIDHIQ_					0	0	0			REV__ENST00000485881.1_1_3:137599977-137600205:+|nuORF	REV__ENST00000485881.1_1_3:137599977-137600205:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2967529296875	2	504.297842	1006.58113	-0.82759	-0.00041735	1.234	0.00062232	0.40643	0.00020496	504.29869541347847	18.564	3.5432	18.564	18.441	21.984	0					271	112	5	0	0	0	0.43426	1	5699	5699		38.806	1.647	1	147700000	+		13051	19658	8406	8439	13247	13247					0.07810333339955378
GIMAIIFIL	9	Unmodified	_GIMAIIFIL_					0	0	0			REV__tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1	REV__tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.8084716796875	2	495.806457	989.598361	0.53733	0.00026641	2.9397	0.0014575	3.477	0.0017239	495.8077189599199	17.294	0.13973	17.294	17.235	17.374	0					5	3	2	0	0	0	0.52436	1	4857	4857		29.842	6.8048	1	42557	+		13052	21919	8407	8440	13248	13248					0.10314537621388808
GINGDIRAK	9	Unmodified	_GINGDIRAK_					0	0	0		nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A	nc|ENSG00000101076|P41235-7|HNF4A	nc|ENSG00000101076|P41235-7|HNF4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.269287109375	2	472.269616	942.524678	-0.5776	-0.00027278	-0.73349	-0.0003464	-1.3111	-0.00061918	472.26958042894137	19.08	0.2688	19.08	18.993	19.262	0					17	6	4	0	0	0	0.032383	1	5683	5683		106.68	27.232	1	1308300			13053	2089	8408	8441	13249	13249					0.05111705503270514
GINGDIRAK	9	Unmodified	_GINGDIRAK_					0	0	0		nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A	nc|ENSG00000101076|P41235-7|HNF4A	nc|ENSG00000101076|P41235-7|HNF4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2692565917969	2	472.269616	942.524678	-1.4508	-0.00068517	0.3767	0.0001779	-1.0741	-0.00050727	472.26984642981995	18.766	0.12212	18.766	18.68	18.802	0					10	4	3	0	0	0	0.035106	1	4951	4951		104.01	27.239	1	445070			13054	2089	8408	8441	13250	13250					0.05111705503270514
GINGDIRAK	9	Unmodified	_GINGDIRAK_					0	0	0		nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A	nc|ENSG00000101076|P41235-7|HNF4A	nc|ENSG00000101076|P41235-7|HNF4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2694091796875	2	472.269616	942.524678	2.4466	0.0011554	-3.2598	-0.0015395	-0.81327	-0.00038408	472.26811656280785	18.971	0.31554	18.971	18.863	19.179	0					14	6	3	0	0	0	0.011389	1	5789	5789		138.06	39.433	1	4157800			13055	2089	8408	8441	13251	13251					0.05111705503270514
GINLPPREIK	10	Unmodified	_GINLPPREIK_					0	0	0		ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENST00000471834.1_1_6:152657861-152688565:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.56427001953125	3	379.564391	1135.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.203	1	19.203	18.703	19.703	0								0	0	0	0.34574	1	5753	5753		43.651	4.398	1				13056	9857	8409	8442	13252	13252					0.10893382668359664
GINREVLP	8	Unmodified	_GINREVLP_					0	0	0		DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant;DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant	DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2596435546875	2	449.261259	896.507966	-1.1807	-0.00053042	-0.10166	-4.5674E-05	-1.2823	-0.0005761	449.2611789921869	23.234	0.40374	23.234	22.971	23.374	0					21	13	2	0	0	0	0.68754	1	6910	6910		35.201	1.0282	1	80940			13057	821	8410	8443	13253	13253					0.055572046173210765
GINSFTCLCP	10	Unmodified	_GINSFTCLCP_					0	0	0		NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7394409179688	2	527.738445	1053.46234	1.2637	0.00066691	1.7214	0.00090846	2.9851	0.0015754	527.7392709080889	29.724	0.15844	29.724	29.666	29.824	0					9	7	2	0	0	0	0.54197	1	9412	9412		40.778	2.9666	1	48342			13058	4830	8411	8444	13254	13254					-0.06225524951605621
GIPELTKLL	9	Unmodified	_GIPELTKLL_					0	0	0		CTNNB1|p.A152G|1|0.67|ENSG00000168036|chr3:41225167-41225167|C/G|missense_variant	CTNNB1|p.A152G|1|0.67|ENSG00000168036|chr3:41225167-41225167|C/G|missense_variant	CTNNB1|p.A152G|1|0.67|ENSG00000168036|chr3:41225167-41225167|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.3103942871094	2	492.310418	982.606283	-0.057703	-2.8408E-05	-0.13185	-6.4911E-05	-0.18955	-9.3318E-05	492.3104752198372	37.25	0.31096	37.25	37.065	37.376	0					15	9	2	0	0	0	0.39215	1	14518	14518		42.396	0	1	62351			13059	710	8412	8445	13255	13255					0.11428388142508084
GIPKLVADF	9	Unmodified	_GIPKLVADF_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.297607421875	2	480.28166	958.548768	-0.1902	-9.1348E-05	0.2514	0.00012074	0.061205	2.9395E-05	480.28247488107144	13.472	0.25919	13.472	13.406	13.665	0					10	7	2	0	0	0	0.55282	1	3056	3056		26.796	1.3459	1	321410			13060	7385	8413	8446	13256	13256					0.06783545936946211
GIPMVIALNM	10	2 Oxidation (M)	_GIPM(Oxidation (M))VIALNM(Oxidation (M))_		GIPM(1)VIALNM(1)		GIPM(48)VIALNM(48)	0	0	2		tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7880249023438	2	545.785395	1089.55624	3.7617	0.0020531	0.77774	0.00042448	4.5394	0.0024776	545.7860364995499	42.023	0.50081	42.023	41.872	42.372	0					42	13	6	0	0	0	0.47621	1	16731	16731		47.916	7.343	1	1490900			13061	22620	8414	8447	13257	13257		818;819			0.015041941506979128
GIRKEIEGIVP	11	Unmodified	_GIRKEIEGIVP_					0	0	0			REV__tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	REV__tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8612060546875	2	605.861338	1209.70812	0.43479	0.00026342	-0.71047	-0.00043044	-0.27568	-0.00016702	605.8609571209962	28.526	0.21243	28.526	28.449	28.661	0					9	4	3	0	0	0	0.49805	1	10464	10464		44.377	2.9506	1	147900	+		13062	21976	8415	8448	13258	13258					0.11165634494273036
GIRTSFKLS	9	Unmodified	_GIRTSFKLS_					0	0	0			REV__nc|ENSG00000089682|Q96IZ5-3|RBM41	REV__nc|ENSG00000089682|Q96IZ5-3|RBM41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.79522705078125	2	504.795466	1007.57638	-0.052474	-2.6489E-05	-0.36974	-0.00018664	-0.42221	-0.00021313	504.7954202266648	27.662	0.30366	27.662	27.529	27.833	0					12	7	3	0	0	0	0.14578	1	9694	9694		68.846	3.3808	1	415700	+		13063	20949	8416	8449	13259	13259					0.0728944919718515
GISAFLMQK	9	Unmodified	_GISAFLMQK_					0	0	0		ENST00000563645.1_1_16:19514794-19516450:-|nuORF;ENSG00000006007|ENST00000353258|GDE1	ENST00000563645.1_1_16:19514794-19516450:-|nuORF	ENST00000563645.1_1_16:19514794-19516450:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.77423095703125	2	497.773145	993.531738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.854	1	15.854	15.354	16.354	0								0	0	0	0.15451	1	4271	4271		58.782	2.0609	1				13064	970	8417	8450	13260	13260					0.03471302059483605
GISDVLVKI	9	Unmodified	_GISDVLVKI_					0	0	0		ENST00000468309.1_1_10:21957921-21959695:+|nuORF	ENST00000468309.1_1_10:21957921-21959695:+|nuORF	ENST00000468309.1_1_10:21957921-21959695:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2943115234375	2	472.294768	942.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.133	1	47.133	46.633	47.633	0								0	0	0	0.3368	1	18832	18832		27.882	1.1893	1				13065	9809	8418	8451	13261	13261					0.10139815108436778
GISETRIEK	9	Unmodified	_GISETRIEK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;nc|ENSG00000159023|P11171-4|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000159023|ENST00000343067|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7879028320312	2	516.787838	1031.56112	0.3254	0.00016816	-0.11325	-5.8524E-05	0.21216	0.00010964	516.7877067949862	19.799	0.17377	19.799	19.727	19.901	0					12	5	3	0	0	0	0.019258	1	5194	5194		123.21	32.607	1	812050			13066	1630;9658;1676;5293	8419	8452	13262	13262					0.04660537609311177
GISETRIEK	9	Unmodified	_GISETRIEK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;nc|ENSG00000159023|P11171-4|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000159023|ENST00000343067|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.787841796875	2	516.787838	1031.56112	0.040763	2.1066E-05	-0.017921	-9.2613E-06	0.022842	1.1804E-05	516.787799502131	20.15	0.33356	20.15	20.005	20.339	0					17	7	4	0	0	0	0.019258	1	6192	6192		123.21	24.579	1	6461000			13067	1630;9658;1676;5293	8419	8452	13263	13263					0.04660537609311177
GISETRIEK	9	Unmodified	_GISETRIEK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;nc|ENSG00000159023|P11171-4|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000159023|ENST00000343067|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7877197265625	2	516.787838	1031.56112	0.11572	5.9801E-05	0.010236	5.2899E-06	0.12595	6.5091E-05	516.7878386742608	19.837	0.1352	19.837	19.771	19.906	0					11	4	3	0	0	0	0.063171	1	5432	5432		90.601	7.8504	1	935390			13068	1630;9658;1676;5293	8419	8452	13264	13264					0.04660537609311177
GISETRIEK	9	Unmodified	_GISETRIEK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;nc|ENSG00000159023|P11171-4|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000159023|ENST00000343067|EPB41;ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7879638671875	2	516.787838	1031.56112	-0.49513	-0.00025587	0.43463	0.00022461	-0.060495	-3.1263E-05	516.7881845038636	20.061	0.36937	20.061	19.944	20.314	0					27	7	6	0	0	0	0.015992	1	6426	6426		128.6	30.02	1	3531500			13069	1630;9658;1676;5293	8419	8452	13265	13265					0.04660537609311177
GISPKCVIK	9	Unmodified	_GISPKCVIK_					0	0	0		ENSG00000197608|ENST00000594440|ZNF841;ZNF841|p.Y14Tfs*21|1|0.31|ENSG00000197608|chr19:52067494-52067494|A/-|frameshift_variant;ZNF616|p.T184Rfs*45|1|0.06|ENSG00000204611|chr19:52116614-52116614|T/-|frameshift_variant;ENSG00000204611|ENST00000600228|ZNF616	ENSG00000197608|ENST00000594440|ZNF841	ENSG00000197608|ENST00000594440|ZNF841	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7818908691406	2	472.783513	943.552473	-2.4705	-0.001168	-1.4959	-0.00070725	-3.9665	-0.0018753	472.7828128122448	40.772	0.15182	40.772	40.661	40.813	0					12	8	2	0	0	0	0.25716	1	14448	14448		54.776	7.119	1	73461			13070	7480	8420	8453	13266	13266					0.07843892439154843
GISSMLSLN	9	Oxidation (M)	_GISSM(Oxidation (M))LSLN_		GISSM(1)LSLN		GISSM(70)LSLN	0	0	1		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.23516845703125	2	469.236593	936.458632	-0.5221	-0.00024499	-3.182	-0.0014931	-3.7041	-0.0017381	469.23512140252114	18.813	0.19423	18.813	18.669	18.863	0					7	4	2	0	0	0	0.1424	1	5712	5712		69.628	7.5202	1	326130			13071	1917	8421	8454	13267	13267		90			-0.012138714537627493
GISYLFLPQ	9	Unmodified	_GISYLFLPQ_					0	0	0		ENST00000379158.6_1_9:34329546-34338807:+|nuORF	ENST00000379158.6_1_9:34329546-34338807:+|nuORF	ENST00000379158.6_1_9:34329546-34338807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.286376953125	2	519.286943	1036.55933	0.059751	3.1028E-05	-0.19463	-0.00010107	-0.13488	-7.0042E-05	519.2868126397974	12.268	0.17471	12.268	12.237	12.411	0					10	6	2	0	0	0	0.45358	1	2564	2564		37.159	3.6435	1	125430			13072	9077	8422	8455	13268	13268					0.042515285913850676
GITATAGMPI	10	Unmodified	_GITATAGMPI_					0	0	0			REV__sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	REV__sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2491455078125	2	466.249503	930.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.896	1	26.896	26.396	27.396	0								0	0	0	0.24422	1	9333	9333		58.782	2.0609	1		+		13073	21575	8423	8456	13269	13269					0.016430227884939086
GITEASRLEQ	10	Unmodified	_GITEASRLEQ_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2896728515625	2	552.288202	1102.56185	3.6767	0.0020306	-3.0187	-0.0016672	0.658	0.00036341	552.2863582605805	41.875	0.17682	41.875	41.804	41.981	0					8	5	2	0	0	0	0.20981	1	16671	16671		78.264	7.8652	1	731590	+		13074	15973	8424	8457	13270	13270					0.01467332258357601
GITGARHRT	9	Unmodified	_GITGARHRT_					0	0	0		ENST00000486040.1_1_7:2278405-2281804:-|nuORF	ENST00000486040.1_1_7:2278405-2281804:-|nuORF	ENST00000486040.1_1_7:2278405-2281804:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7741394042969	2	484.772857	967.531161	1.1873	0.00057555	1.1263	0.00054602	2.3136	0.0011216	484.77341013158104	15.683	0.11884	15.683	15.633	15.751	0					14	5	3	0	0	0	0.13519	1	3448	3448		71.296	71.296	1	806500			13075	10013	8425	8458	13271	13271					0.046096434546598175
GITIIKEL	8	Unmodified	_GITIIKEL_					0	0	0			REV__ENST00000567019.1_1_15:43489502-43501706:-|nuORF	REV__ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7843017578125	2	443.784036	885.553519	0.52782	0.00023424	-1.0826	-0.00048043	-0.55475	-0.00024619	443.78361820925943	42.961	0.13159	42.961	42.869	43.001	0					10	7	2	0	0	0	0.67394	1	16830	16830		37.159	1.5408	1	76553	+		13076	16155	8426	8459	13272	13272					0.10616430079699057
GITLDLIKS	9	Unmodified	_GITLDLIKS_					0	0	0		VLDLR|p.P602H|1|0.4|ENSG00000147852|chr9:2647575-2647575|C/A|missense_variant;nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR	VLDLR|p.P602H|1|0.4|ENSG00000147852|chr9:2647575-2647575|C/A|missense_variant	VLDLR|p.P602H|1|0.4|ENSG00000147852|chr9:2647575-2647575|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.29266357421875	2	480.292225	958.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.716	1	34.716	34.216	35.216	0								0	0	0	0.24724	1	12315	12315		44.117	0	1				13077	4800	8427	8460	13273	13273					0.08895511245827947
GITPGATVLT	10	Unmodified	_GITPGATVLT_					0	0	0		ENST00000546123.2_1_1:228362303-228363211:+|nuORF;ENST00000484749.5_1_1:228360905-228363211:+|nuORF;ENSG00000181873|ENST00000366711|IBA57	ENST00000546123.2_1_1:228362303-228363211:+|nuORF	ENST00000546123.2_1_1:228362303-228363211:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2658996582031	2	465.26875	928.522947	-2.3089	-0.0010743	-4.4007	-0.0020475	-6.7096	-0.0031218	465.2667043789503	29.76	0.70235	29.76	29.443	30.145	0					46	18	3	0	0	0	0.54197	1	10118	10118		40.778	5.1599	1	608890			13078	6868	8428	8461	13274	13274					0.055826516946467564
GIVECLGPK	9	Unmodified	_GIVECLGPK_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2516784667969	2	458.252046	914.489538	0.78646	0.00036039	-2.3191	-0.0010627	-1.5326	-0.00070234	458.25139253559024	34.771	0.35331	34.771	34.652	35.005	0					14	9	3	0	0	0	0.1115	1	12996	12996		76.774	21.27	1	144550			13079	4491	8429	8462	13275	13275					0.028873266511141082
GIVFCHSRRVL	11	Unmodified	_GIVFCHSRRVL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.57586669921875	3	429.576525	1285.70774	-0.5138	-0.00022072	-1.3376	-0.0005746	-1.8514	-0.00079531	429.57604840555564	19.339	0.26451	19.339	19.231	19.495	0					14	5	3	0	0	0	0.70609	1	6109	6109		27.047	0	1	234160			13080	6226	8430	8463	13276	13276					0.07631936293432773
GIVGEKSQ	8	Unmodified	_GIVGEKSQ_					0	0	0		ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.2240905761719	2	409.224342	816.434132	0.052504	2.1486E-05	-0.39972	-0.00016357	-0.34721	-0.00014209	409.2243291979423	16.289	0.16768	16.289	16.179	16.347	0					5	3	2	0	0	0	0.32815	1	4613	4613		79.451	5.4763	1	413660			13081	8861	8431	8464	13277	13277					0.018572364549982012
GIVGLQLR	8	Unmodified	_GIVGLQLR_					0	0	0		tr|U7T092|U7T092_FUSNUGeneralsecretionpathwayproteinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00778PE=4SV=1	tr|U7T092|U7T092_FUSNUGeneralsecretionpathwayproteinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00778PE=4SV=1	tr|U7T092|U7T092_FUSNUGeneralsecretionpathwayproteinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00778PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.2745056152344	2	428.27417	854.533787	0.17505	7.4971E-05	0.72068	0.00030865	0.89573	0.00038362	428.27452840324645	31.365	0.18824	31.365	31.274	31.463	0					6	4	2	0	0	0	0.39542	1	10803	10803		71.378	8.3995	1	28646			13082	22897	8432	8465	13278	13278					0.10070098859614518
GIVSTPVPK	9	Unmodified	_GIVSTPVPK_					0	0	0		ENST00000438210.1_1_1:40428398-40429073:+|nuORF	ENST00000438210.1_1_1:40428398-40429073:+|nuORF	ENST00000438210.1_1_1:40428398-40429073:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2736511230469	2	449.273835	896.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.858	1	30.858	30.358	31.358	0								0	0	0	0.23445	1	10557	10557		45.972	1.8554	1				13083	9545	8433	8466	13279	13279					0.08071259419898524
GIVTDSVRGNL	11	Unmodified	_GIVTDSVRGNL_					0	0	0		nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	nc|ENSG00000116962|P14543-2|NID1	nc|ENSG00000116962|P14543-2|NID1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.543701171875	3	377.543655	1129.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.749	1	23.749	23.249	24.249	0								0	0	0	0.45674	1	8097	8097		23.378	3.3811	1				13084	3015	8434	8467	13280	13280					0.049516115293727125
GIWKGAVAL	9	Unmodified	_GIWKGAVAL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant;VPS13A|p.K1113Rfs*30|1|0.13|ENSG00000197969|chr9:77283645-77283645|A/-|frameshift_variant;VPS13A|p.T392Pfs*7|2|0.22|ENSG00000197969|chr9:77225933-77225933|A/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.77386474609375	2	457.776545	913.538538	-0.43797	-0.00020049	0.36772	0.00016833	-0.070249	-3.2158E-05	457.7764381792425	28.349	0.41891	28.349	28.059	28.478	0					22	8	4	0	0	0	0.21116	1	10184	10184		60.294	7.9948	1	627330			13085	7514	8435	8468	13281	13281					0.07830983002372705
GIWPRNADK	9	Unmodified	_GIWPRNADK_					0	0	0		ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.8572998046875	3	352.857686	1055.55123	-0.84924	-0.00029966	0.83543	0.00029479	-0.013814	-4.8743E-06	352.85793085398865	20.083	0.32357	20.083	19.943	20.266	0					22	11	3	0	0	0	0.51991	1	5527	5527		30.318	1.1682	1	87462			13086	7814	8436	8469	13282	13282					0.025673943945776045
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF;ENST00000465222.1_1_3:186502277-186502505:+|nuORF;ENST00000485101.5_1_3:186501384-186502505:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000467585.1_1_3:186502182-186503751:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.2621459960938	2	524.260925	1046.5073	0.72232	0.00037868	0.010295	5.397E-06	0.73261	0.00038408	524.2609151216977	36.632	0.25768	36.632	36.523	36.781	0					22	14	2	0	0	0	0.41113	1	12024	12024		40.778	5.5774	1	86237			13087	4457;5432;5192	8437	8470	13283	13283					-0.014096348223802124
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF;ENST00000465222.1_1_3:186502277-186502505:+|nuORF;ENST00000485101.5_1_3:186501384-186502505:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000467585.1_1_3:186502182-186503751:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2611083984375	2	524.260925	1046.5073	0.092498	4.8493E-05	0.55739	0.00029222	0.64989	0.00034071	524.2611555624309	36.874	0.403	36.874	36.776	37.179	0					26	11	3	0	0	0	0.17854	1	13973	13973		64.207	19.83	1	467350			13088	4457;5432;5192	8437	8470	13284	13284					-0.014096348223802124
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF;ENST00000465222.1_1_3:186502277-186502505:+|nuORF;ENST00000485101.5_1_3:186501384-186502505:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000467585.1_1_3:186502182-186503751:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2615356445312	2	524.260925	1046.5073	0.066378	3.48E-05	0.44718	0.00023444	0.51356	0.00026924	524.2613160416902	36.859	0.27083	36.859	36.788	37.058	0					15	8	2	0	0	0	0.42902	1	14373	14373		39.253	3.6345	1	200120			13089	4457;5432;5192	8437	8470	13285	13285					-0.014096348223802124
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF;ENST00000465222.1_1_3:186502277-186502505:+|nuORF;ENST00000485101.5_1_3:186501384-186502505:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000467585.1_1_3:186502182-186503751:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2608032226562	2	524.260925	1046.5073	-1.2648	-0.00066308	2.1848	0.0011454	0.92005	0.00048234	524.2618983143974	36.702	0.25653	36.702	36.592	36.848	0					23	12	3	0	0	0	0.2873	1	13150	13150		51.335	6.9583	1	127370			13090	4457;5432;5192	8437	8470	13286	13286					-0.014096348223802124
GIYEMIPKE	9	Unmodified	_GIYEMIPKE_					0	0	0		ENSG00000122121|ENST00000371106|XPNPEP2	ENSG00000122121|ENST00000371106|XPNPEP2	ENSG00000122121|ENST00000371106|XPNPEP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2780151367188	2	540.275718	1078.53688	3.4738	0.0018768	0.82333	0.00044482	4.2971	0.0023216	540.2761178389717	16.375	0.16739	16.375	16.267	16.434	0					8	3	3	0	0	0	0.39215	1	4532	4532		42.396	1.8235	1	1225600			13091	3249	8438	8471	13287	13287					0.0007556113146165444
GIYGAFLQV	9	Unmodified	_GIYGAFLQV_					0	0	0		tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1	tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1	tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2638854980469	2	484.26601	966.517468	-2.9172	-0.0014127	-1.9892	-0.00096328	-4.9064	-0.002376	484.26501706509634	34.126	0.14415	34.126	34.083	34.227	0					6	4	2	0	0	0	0.47428	1	12058	12058		35.201	3.2459	1	70730			13092	22845	8439	8472	13288	13288					0.03286972902844809
GKADPEQWW	9	Unmodified	_GKADPEQWW_					0	0	0			REV__ENSG00000141696|ENST00000393928|P3H4	REV__ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7587280273438	2	558.759081	1115.50361	1.8003	0.0010059	-2.8989	-0.0016198	-1.0986	-0.00061388	558.7574784844005	20.756	0.24297	20.756	20.699	20.942	0					9	5	3	0	0	0	0.51991	1	6504	6504		30.318	2.4355	1	381760	+		13093	15129	8440	8473	13289	13289					-0.049523045962587275
GKAESIVHQS	10	Unmodified	_GKAESIVHQS_					0	0	0			REV__ENST00000595529.1_1_19:41112383-41114583:+|nuORF	REV__ENST00000595529.1_1_19:41112383-41114583:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.281005859375	2	528.277638	1054.54072	3.4674	0.0018317	3.5619	0.0018817	7.0293	0.0037134	528.2791673496997	11.885	0.29438	11.885	11.797	12.091	0					13	8	2	0	0	0	0.72365	1	2416	2416		18.262	1.7889	1	1146000	+		13094	13419	8441	8474	13290	13290					0.015633669495173308
GKAFCAGG	8	Unmodified	_GKAFCAGG_					0	0	0		nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.66815185546875	2	355.668149	709.321745	0.3108	0.00011054	-0.65024	-0.00023127	-0.33944	-0.00012073	355.66792339142637	28.441	0.40372	28.441	28.241	28.645	0					11	8	2	0	0	0	0.79293	1	10411	10411		15.636	6.1657	1	230790			13095	7532	8442	8475	13291	13291					-0.04454315822829358
GKAFCAGG	8	Unmodified	_GKAFCAGG_					0	0	0		nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.6680603027344	2	355.668149	709.321745	-0.056347	-2.0041E-05	-0.34907	-0.00012415	-0.40542	-0.00014419	355.66812778717497	28.389	0.56571	28.389	28.109	28.675	0					21	11	3	0	0	0	0.77625	1	10281	10281		5.0869	0	1	297170			13096	7532	8442	8475	13292	13292					-0.04454315822829358
GKAFGSGSN	9	Unmodified	_GKAFGSGSN_					0	0	0		ZNF345|p.L217F|1|0.33|ENSG00000251247|chr19:36877479-36877479|C/T|missense_variant;ENSG00000251247|ENST00000420450|ZNF345	ZNF345|p.L217F|1|0.33|ENSG00000251247|chr19:36877479-36877479|C/T|missense_variant	ZNF345|p.L217F|1|0.33|ENSG00000251247|chr19:36877479-36877479|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.2001953125	2	412.698492	823.382431	-1.4469	-0.00059713	1.7692	0.00073014	0.3223	0.00013301	412.69915393209084	13.518	0.16846	13.518	13.476	13.644	0					15	9	3	0	0	0	0.47038	1	2794	2794		35.618	11.416	1	167580			13097	7993	8443	8476	13293	13293					-0.03632507238899052
GKAFGSGSN	9	Unmodified	_GKAFGSGSN_					0	0	0		ZNF345|p.L217F|1|0.33|ENSG00000251247|chr19:36877479-36877479|C/T|missense_variant;ENSG00000251247|ENST00000420450|ZNF345	ZNF345|p.L217F|1|0.33|ENSG00000251247|chr19:36877479-36877479|C/T|missense_variant	ZNF345|p.L217F|1|0.33|ENSG00000251247|chr19:36877479-36877479|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.6988525390625	2	412.698492	823.382431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.515	1	13.515	13.015	14.015	0								0	0	0	0.38123	1	2728	2728		16.473	0.83693	1				13098	7993	8443	8476	13294	13294					-0.03632507238899052
GKAFTHLI	8	Unmodified	_GKAFTHLI_					0	0	0		nc|ENSG00000172748|Q8TC21-3|ZNF596	nc|ENSG00000172748|Q8TC21-3|ZNF596	nc|ENSG00000172748|Q8TC21-3|ZNF596	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7628173828125	2	443.760895	885.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.44	1	12.44	11.94	12.94	0								0	0	0	1.7419	1	2646	2646		26.796	1.3459	1				13099	11648	8444	8477	13295	13295					0.05990409968296717
GKALRQRA	8	Unmodified	_GKALRQRA_					0	0	0		ZNF470|p.F602L|1|0.15|ENSG00000197016|chr19:56578235-56578235|C/A|missense_variant	ZNF470|p.F602L|1|0.15|ENSG00000197016|chr19:56578235-56578235|C/A|missense_variant	ZNF470|p.F602L|1|0.15|ENSG00000197016|chr19:56578235-56578235|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2814025878906	2	450.280318	898.546083	2.539	0.0011432	0.30572	0.00013766	2.8447	0.0012809	450.2803141276317	41.351	0.30093	41.351	41.256	41.557	0					10	7	2	0	0	0	0.59411	1	16430	16430		50.025	2.1089	1	386740			13100	23156	8445	8478	13296	13296					0.09275135322650385
GKATGNSLKIK	11	Unmodified	_GKATGNSLKIK_					0	0	0			REV__nc|ENSG00000188042|P56559|ARL4C	REV__nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.83984375	2	558.840405	1115.66626	1.2893	0.0007205	-0.72778	-0.00040671	0.5615	0.00031379	558.839974575021	14.545	0.17499	14.545	14.477	14.652	0					10	7	2	0	0	0	0.20102	1	2997	2997		74.165	12.058	1	213070	+		13101	17151	8446	8479	13297	13297					0.1130507880575351
GKDFNLGMPW	10	Unmodified	_GKDFNLGMPW_					0	0	0		ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.28125	2	582.778959	1163.54336	0.53977	0.00031457	1.8551	0.0010811	2.3949	0.0013957	582.7798671907989	20.745	0.20811	20.745	20.624	20.832	0					12	7	2	0	0	0	0.67098	1	5578	5578		25.574	2.0514	1	63269			13102	11068	8447	8480	13298	13298					-0.03186500917172452
GKDFNLGMPW	10	Unmodified	_GKDFNLGMPW_					0	0	0		ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.7808227539062	2	582.778959	1163.54336	3.2289	0.0018817	0.073532	4.2853E-05	3.3024	0.0019246	582.7788350776887	20.92	0.56608	20.92	20.56	21.126	0					28	11	5	0	0	0	0.17679	1	6714	6714		82.305	22.187	1	2215500			13103	11068	8447	8480	13299	13299					-0.03186500917172452
GKDGPAGAP	9	Unmodified	_GKDGPAGAP_					0	0	0			REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.1954040527344	2	385.195585	768.376617	-0.6052	-0.00023312	0.20981	8.0817E-05	-0.39539	-0.0001523	385.19568465193566	15.72	0.26888	15.72	15.596	15.865	0					9	5	2	0	0	0	0.57706	1	4189	4189		24.203	0	1	187360	+		13104	12548	8448	8481	13300	13300					-0.016836057505656754
GKDISMQRCPF	11	Unmodified	_GKDISMQRCPF_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	641.3069458007812	2	641.307558	1280.60056	-0.77845	-0.00049923	-0.47426	-0.00030415	-1.2527	-0.00080338	641.3073705368123	26.804	0.17436	26.804	26.734	26.908	0					9	6	2	0	0	0	0.81333	1	8466	8466		12.207	0.57075	1	51471	+		13105	15633	8449	8482	13301	13301					-0.028514017031056937
GKDPEGRALLA	11	Unmodified	_GKDPEGRALLA_					0	0	0		tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.2133483886719	3	376.212017	1125.61422	3.2512	0.0012231	0.30523	0.00011483	3.5564	0.001338	376.2120452871239	31.345	0.7112	31.345	31.241	31.952	0					27	14	5	0	0	0	0.69004	1	11718	11718		28.577	0.49524	1	1339600			13106	22591	8450	8483	13302	13302					0.056439153920109675
GKDYTLIFHL	10	Unmodified	_GKDYTLIFHL_					0	0	0		nc|ENSG00000197057|Q6ZMT9-2|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1;ENSG00000197057|ENST00000639862|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.8871765136719	3	402.888763	1205.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.774	1	19.774	19.274	20.274	0								0	0	0	0.37293	1	5436	5436		38.754	3.6016	1				13107	7420	8451	8484	13303	13303					0.049862740572052644
GKEMPIAVLY	10	Unmodified	_GKEMPIAVLY_					0	0	0			REV__ENST00000582035.1_1_17:43530658-43531768:-|nuORF	REV__ENST00000582035.1_1_17:43530658-43531768:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8069458007812	2	560.807185	1119.59982	1.2964	0.00072705	-1.4391	-0.00080705	-0.14265	-8E-05	560.8063122213764	39.709	0.28645	39.709	39.613	39.9	0					9	6	2	0	0	0	0.31894	1	15704	15704		62.107	0	1	100560	+		13108	17625	8452	8485	13304	13304					0.04480126919497707
GKESNCKKGV	10	Unmodified	_GKESNCKKGV_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2731323242188	2	525.274041	1048.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.418	1	16.418	15.918	16.918	0								0	0	0	0.4201	1	3888	3888		9.1829	0	1				13109	3847	8453	8486	13305	13305					0.01120311077443148
GKFFLNMLTK	10	Unmodified	_GKFFLNMLTK_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	599.8374633789062	2	599.836277	1197.658	3.1298	0.0018774	-0.90444	-0.00054251	2.2253	0.0013348	599.8357420534095	35.785	0.76823	35.785	35.296	36.064	0					43	15	4	0	0	0	0.34979	1	13823	13823		67.494	67.494	1	891260	+		13110	17092	8454	8487	13306	13306					0.06707808564760853
GKFMLLASTF	10	Unmodified	_GKFMLLASTF_					0	0	0		ENST00000467242.1_1_2:30455222-30455939:+|nuORF	ENST00000467242.1_1_2:30455222-30455939:+|nuORF	ENST00000467242.1_1_2:30455222-30455939:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.803955078125	2	557.801903	1113.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.252	1	21.252	20.752	21.752	0								0	0	0	0.41253	1	5825	5825		26.693	3.6504	1				13111	9799	8455	8488	13307	13307					0.03700144265076233
GKGATKGG	8	Unmodified	_GKGATKGG_					0	0	0			REV__ENST00000519932.5_1_6:112575345-112575919:-|nuORF	REV__ENST00000519932.5_1_6:112575345-112575919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.1935119628906	2	338.192845	674.371138	1.5868	0.00053666	0.57223	0.00019352	2.1591	0.00073018	338.1929253188411	45.319	0.55861	45.319	45.175	45.734	0					48	22	3	0	0	0	0.78539	1	18125	18125		10.866	2.6343	1	578800	+		13112	19944	8456	8489	13308	13308					0.02092715457615668
GKGGAGGD	8	Unmodified	_GKGGAGGD_					0	0	0			REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	618.2855834960938	1	618.28418	617.276903	3.0623	0.0018933	-0.66059	-0.00040843	2.4017	0.0014849	618.2842959138361	42.085	0.63332	42.085	41.739	42.372	0					19	17	2	0	0	0	0.79882	1	16753	16753		19.36	0	1	84680	+		13113	14659	8457	8490	13309	13309					-0.04704423364523791
GKGGRRRD	8	Unmodified	_GKGGRRRD_					0	0	0			REV__ENST00000382159.7_1_19:2514614-2514812:-|nuORF	REV__ENST00000382159.7_1_19:2514614-2514812:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2583312988281	2	451.257374	900.500195	3.7655	0.0016992	-1.6992	-0.00076678	2.0663	0.00093242	451.2568131383359	22.201	0.14135	22.201	22.108	22.249	0					6	4	2	0	0	0	0.73426	1	6498	6498		29.15	0	1	63761	+		13114	18792	8458	8491	13310	13310					0.0459649014040906
GKGLRQWTI	9	Unmodified	_GKGLRQWTI_					0	0	0			REV__nc|ENSG00000131269|O75027-3|ABCB7	REV__nc|ENSG00000131269|O75027-3|ABCB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8091430664062	2	529.808908	1057.60326	-1.1882	-0.00062953	0.95156	0.00050415	-0.23666	-0.00012539	529.8091449845535	41.61	0.10913	41.61	41.558	41.667	0					9	6	2	0	0	0	0.40353	1	14644	14644		26.693	0	1	40750	+		13115	14615	8459	8492	13311	13311					0.07676557808372309
GKGPGGPP	8	Unmodified	_GKGPGGPP_					0	0	0		ENSG00000169605|ENST00000377938|GKN1	REV__nc|ENSG00000130731|Q96S19-6|METTL26	REV__nc|ENSG00000130731|Q96S19-6|METTL26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.68194580078125	2	333.682114	665.349674	0.38724	0.00012922	-0.68056	-0.00022709	-0.29331	-9.7873E-05	333.681915132188	21.087	0.11555	21.087	20.98	21.095	0					4	2	2	0	0	0	0.77625	1	6928	6928		5.0869	0.77062	1	140560			13116	6172	8460	8493	13312	13312					0.00361330428893325
GKGWCRPAAL	10	Unmodified	_GKGWCRPAAL_					0	0	0			REV__ENST00000486818.5_1_7:72951459-72951579:-|nuORF	REV__ENST00000486818.5_1_7:72951459-72951579:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7835083007812	2	529.781836	1057.54912	2.3424	0.001241	0.70752	0.00037483	3.0499	0.0016158	529.7822678959236	16.944	0.17096	16.944	16.858	17.029	0					13	4	4	0	0	0	0.37692	1	4684	4684		58.782	58.782	1	1815500	+		13117	19668	8461	8494	13313	13313					0.02264642385125626
GKGWCRPAAL	10	Unmodified	_GKGWCRPAAL_					0	0	0			REV__ENST00000486818.5_1_7:72951459-72951579:-|nuORF	REV__ENST00000486818.5_1_7:72951459-72951579:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.783447265625	2	529.781836	1057.54912	1.7343	0.00091878	0.94266	0.0004994	2.6769	0.0014182	529.7825480902341	16.883	0.30054	16.883	16.712	17.013	0					17	6	5	0	0	0	0.30737	1	4914	4914		66.429	0.96389	1	1743400	+		13118	19668	8461	8494	13314	13314					0.02264642385125626
GKHAGSLSGWG	11	Unmodified	_GKHAGSLSGWG_					0	0	0			REV__ENST00000376726.3_1_20:25039268-25039349:-|nuORF	REV__ENST00000376726.3_1_20:25039268-25039349:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.765380859375	2	528.764697	1055.51484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.913	1	22.913	22.413	23.413	0								0	0	0	0.45674	1	6906	6906		20.947	0.4651	1		+		13119	18722	8462	8495	13315	13315					-0.010694825020891585
GKIGTQQLG	9	Unmodified	_GKIGTQQLG_					0	0	0			REV__ENST00000308330.2_1_12:65564134-65564248:+|nuORF	REV__ENST00000308330.2_1_12:65564134-65564248:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2582702636719	2	451.258717	900.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.513	1	34.513	34.013	35.013	0								0	0	0	0.1633	1	11644	11644		56.721	3.3696	1		+		13120	18254	8463	8496	13316	13316					0.04864900754705559
GKISTNYLNP	10	Unmodified	_GKISTNYLNP_					0	0	0		ZSCAN26|p.E207Tfs*44|1|0.08|ENSG00000197062|chr6:28276276-28276277|-/CACCAATTACT|frameshift_variant	ZSCAN26|p.E207Tfs*44|1|0.08|ENSG00000197062|chr6:28276276-28276277|-/CACCAATTACT|frameshift_variant	ZSCAN26|p.E207Tfs*44|1|0.08|ENSG00000197062|chr6:28276276-28276277|-/CACCAATTACT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.795654296875	2	553.795663	1105.57677	1.6192	0.00089668	-1.7094	-0.00094666	-0.090244	-4.9977E-05	553.7948963975939	14.175	0.15987	14.175	14.074	14.234	0					5	3	2	0	0	0	0.56931	1	3634	3634		37.812	2.6595	1	399230			13121	23178	8464	8497	13317	13317					0.02820824126365551
GKKDQWDTL	9	Unmodified	_GKKDQWDTL_					0	0	0			REV__nc|ENSG00000171148|O75528-2|TADA3	REV__nc|ENSG00000171148|O75528-2|TADA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.282958984375	2	545.780013	1089.54547	3.7588	0.0020515	-0.10734	-5.8582E-05	3.6515	0.0019929	545.7801667239918	46.084	1.4738	46.084	45.341	46.815	0					143	64	4	0	0	0	0.44593	1	18622	18622		37.812	9.73	1	738900	+		13122	16403	8465	8498	13318	13318					0.0042825109228488145
GKKGAGGG	8	Unmodified	_GKKGAGGG_					0	0	0			REV__TBX18|p.E63K|1|0.41|ENSG00000112837|chr6:84763995-84763995|C/T|missense_variant	REV__TBX18|p.E63K|1|0.41|ENSG00000112837|chr6:84763995-84763995|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	316.1805725097656	2	316.179738	630.344923	0.53519	0.00016922	2.1693	0.00068588	2.7045	0.00085509	316.1802898735035	42.162	0.20877	42.162	42.056	42.265	0					14	10	2	0	0	0	0.78216	1	15977	15977		8.8223	0	1	65732	+		13123	21627	8466	8499	13319	13319					0.014964462861485117
GKKGAGGG	8	Unmodified	_GKKGAGGG_					0	0	0			REV__TBX18|p.E63K|1|0.41|ENSG00000112837|chr6:84763995-84763995|C/T|missense_variant	REV__TBX18|p.E63K|1|0.41|ENSG00000112837|chr6:84763995-84763995|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	316.18017578125	2	316.179738	630.344923	2.9946	0.00094684	-0.70134	-0.00022175	2.2933	0.00072509	316.1794072062962	43.976	0.61063	43.976	43.652	44.262	0					43	22	3	0	0	0	0.78216	1	17578	17578		8.8223	0	1	1034200	+		13124	21627	8466	8499	13320	13320					0.014964462861485117
GKKIPAESV	9	Unmodified	_GKKIPAESV_					0	0	0		TMTC3|p.T843A|1|0.04|ENSG00000139324|chr12:88195431-88195431|A/G|missense_variant	TMTC3|p.T843A|1|0.04|ENSG00000139324|chr12:88195431-88195431|A/G|missense_variant	TMTC3|p.T843A|1|0.04|ENSG00000139324|chr12:88195431-88195431|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.77618408203125	2	464.776742	927.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.866	1	34.866	34.366	35.366	0								0	0	0	0.27025	1	11776	11776		40.778	3.6191	1				13125	22550	8467	8500	13321	13321					0.07226357931551775
GKKRGPPGSKD	11	Unmodified	_GKKRGPPGSKD_					0	0	0		nc|ENSG00000143479|O43781-2|DYRK3;ENSG00000143479|ENST00000367109|DYRK3	nc|ENSG00000143479|O43781-2|DYRK3	nc|ENSG00000143479|O43781-2|DYRK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.21337890625	3	376.215761	1125.62546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.18	1	31.18	30.68	31.68	0								0	0	0	0.45674	1	10705	10705		18.531	1.8137	1				13126	4559	8468	8501	13322	13322					0.06766737486145757
GKLFDTFEPA	10	Unmodified	_GKLFDTFEPA_					0	0	0			REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|150|2|anti-sense	REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|150|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.7869262695312	2	562.784764	1123.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.98	1	32.98	32.48	33.48	0								0	0	0	0.32041	1	11044	11044		47.657	9.8458	1		+		13127	20819	8469	8502	13323	13323					-0.0018598062217733968
GKLLISPWHKW	11	Unmodified	_GKLLISPWHKW_					0	0	0			REV__ENST00000541928.1_1_11:63991649-63992138:-|nuORF	REV__ENST00000541928.1_1_11:63991649-63992138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	682.896728515625	2	682.895515	1363.77648	1.4098	0.00096274	0.27468	0.00018758	1.6845	0.0011503	682.8956888355333	41.255	2.0516	41.255	39.791	41.842	0					158	113	2	0	0	0	0.75295	1	13403	13403		22.58	0.89391	1	151690	+		13128	15432	8470	8503	13324	13324					0.10913923864768549
GKLTNVPA	8	Unmodified	_GKLTNVPA_					0	0	0		PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant;ENSG00000068489|ENST00000262293|PRR11	PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant	PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.23724365234375	2	400.237253	798.459953	-0.089818	-3.5949E-05	0.22264	8.911E-05	0.13282	5.3161E-05	400.23741594608003	19.967	0.18295	19.967	19.851	20.034	0					10	5	2	0	0	0	0.59773	1	5269	5269		49.442	5.3247	1	71906			13129	1422	8471	8504	13325	13325					0.052661306972822786
GKLVKAGS	8	Unmodified	_GKLVKAGS_					0	0	0			REV__tr|U7T1R9|U7T1R9_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00550PE=4SV=1	REV__tr|U7T1R9|U7T1R9_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00550PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.2398986816406	2	380.239796	758.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.022	1	31.022	30.522	31.522	0								0	0	0	1.7419	1	11250	11250		24.203	1.1603	1		+		13130	22082	8472	8505	13326	13326					0.07614434559900474
GKMEISRVY	9	Unmodified	_GKMEISRVY_					0	0	0			REV__CCDC110|p.N755Mfs*18|1|0.24|ENSG00000168491|chr4:185458323-185458323|T/-|frameshift_variant	REV__CCDC110|p.N755Mfs*18|1|0.24|ENSG00000168491|chr4:185458323-185458323|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.7876586914062	2	541.786784	1081.55902	1.752	0.00094919	-0.77558	-0.0004202	0.97638	0.00052899	541.7863224563725	25.748	0.28377	25.748	25.675	25.959	0					6	5	2	0	0	0	0.24095	1	7778	7778		56.721	7.185	1	228070	+		13131	12350	8473	8506	13327	13327					0.02149785599885945
GKMKEYLL	8	Unmodified	_GKMKEYLL_					0	0	0			REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.27801513671875	2	491.275521	980.536489	2.6945	0.0013237	1.5217	0.00074756	4.2162	0.0020713	491.27635972235237	28.754	0.4154	28.754	28.526	28.941	0					22	8	3	0	0	0	0.72381	1	10458	10458		30.504	0	1	1067800	+		13132	16152	8474	8507	13328	13328					0.045441862022585156
GKMKWKNKG	9	Unmodified	_GKMKWKNKG_					0	0	0		ENST00000260526.10_1_1:94668505-94668663:-|nuORF	ENST00000260526.10_1_1:94668505-94668663:-|nuORF	ENST00000260526.10_1_1:94668505-94668663:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8076782226562	2	538.805311	1075.59607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.196	1	12.196	11.696	12.696	0								0	0	0	0.13522	1	2516	2516		63.306	13.77	1				13133	8289	8475	8508	13329	13329					0.061295019362887615
GKNKEPVCGY	10	Unmodified	_GKNKEPVCGY_					0	0	0		SLC12A3|p.R507C|1|0.56|ENSG00000070915|chr16:56880205-56880205|C/T|missense_variant	SLC12A3|p.R507C|1|0.56|ENSG00000070915|chr16:56880205-56880205|C/T|missense_variant	SLC12A3|p.R507C|1|0.56|ENSG00000070915|chr16:56880205-56880205|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7689819335938	2	547.768591	1093.52263	1.8799	0.0010298	0.1992	0.00010912	2.0791	0.0011389	548.2702371440589	47.003	0.26241	47.003	46.868	47.131	0					21	12	2	0	0	0	0.52707	1	18778	18778		42.396	5.237	1	109220			13134	22399	8476	8509	13330	13330					-0.020390912968423436
GKNTQDHCDG	10	Unmodified	_GKNTQDHCDG_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.715576171875	2	537.717087	1073.41962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.726	1	15.726	15.226	16.226	0								0	0	0	0.4201	1	3638	3638		12.812	1.3007	1		+		13135	19725	8477	8510	13331	13331					-0.1141520375545042
GKNTTMVK	8	Unmodified	_GKNTTMVK_					0	0	0		ENST00000448115.1_1_1:220490746-220490923:-|nuORF	ENST00000448115.1_1_1:220490746-220490923:-|nuORF	ENST00000448115.1_1_1:220490746-220490923:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.7402648925781	2	439.741845	877.469137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.218	1	24.218	23.718	24.718	0								0	0	0	1.7419	1	8122	8122		58.782	2.0609	1				13136	9632	8478	8511	13332	13332					0.025501559912981975
GKNYWIALV	9	Unmodified	_GKNYWIALV_					0	0	0		tr|U7T5S5|U7T5S5_FUSNUCarbonstarvationproteinCstAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00374PE=3SV=1	tr|U7T5S5|U7T5S5_FUSNUCarbonstarvationproteinCstAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00374PE=3SV=1	tr|U7T5S5|U7T5S5_FUSNUCarbonstarvationproteinCstAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00374PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2999267578125	2	532.300384	1062.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.384	1	26.384	25.884	26.884	0								0	0	0	0.34228	1	8291	8291		26.796	2.5934	1				13137	23018	8479	8512	13333	13333					0.057426372025247474
GKPGLPGML	9	Unmodified	_GKPGLPGML_					0	0	0			REV__COL27A1|p.P627L|1|0.47|ENSG00000196739|chr9:114169435-114169435|C/T|missense_variant	REV__COL27A1|p.P627L|1|0.47|ENSG00000196739|chr9:114169435-114169435|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2511901855469	2	435.249306	868.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.395	1	44.395	43.895	44.895	0								0	0	0	0.37146	1	17288	17288		19.36	1.0356	1		+		13138	12556	8480	8513	13334	13334					0.04455647859299461
GKPSSALSLSQ	11	Unmodified	_GKPSSALSLSQ_					0	0	0			REV__CDC25A|p.G469Dfs*7|1|0.3|ENSG00000164045|chr3:48159372-48159372|C/-|frameshift_variant	REV__CDC25A|p.G469Dfs*7|1|0.3|ENSG00000164045|chr3:48159372-48159372|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7916259765625	2	537.793121	1073.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.772	1	33.772	33.272	34.272	0								0	0	0	0.39826	1	12872	12872		37.508	1.1905	1		+		13139	12388	8481	8514	13335	13335					0.03784520263752711
GKQETLRR	8	Unmodified	_GKQETLRR_					0	0	0			REV__SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant	REV__SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2862854003906	2	494.28834	986.562127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.849	1	19.849	19.349	20.349	0								0	0	0	1.7419	1	5471	5471		17.365	0	1		+		13140	13453	8482	8515	13336	13336					0.06830796768906566
GKQLGEENSQ	10	Unmodified	_GKQLGEENSQ_					0	0	0		ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2613525390625	2	545.262185	1088.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.26	1	25.26	24.76	25.76	0								0	0	0	0.38475	1	7582	7582		35.152	4.8343	1				13141	9154	8483	8516	13337	13337					-0.03089831155398315
GKQWDQGVM	9	Unmodified	_GKQWDQGVM_					0	0	0			REV__tr|U7SRH0|U7SRH0_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01599PE=4SV=1	REV__tr|U7SRH0|U7SRH0_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01599PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7467651367188	2	524.747659	1047.48076	-1.256	-0.00065906	-1.1178	-0.00058656	-2.3738	-0.0012456	524.7471166659241	19.44	0.14745	19.44	19.345	19.492	0					8	3	3	0	0	0	0.17854	1	5267	5267		64.207	16.292	1	389580	+		13142	21852	8484	8517	13338	13338					-0.041076469853805975
GKRFLLSA	8	Unmodified	_GKRFLLSA_					0	0	0		ENST00000370651.5_1_6:64290190-64290403:+|nuORF	ENST00000370651.5_1_6:64290190-64290403:+|nuORF	ENST00000370651.5_1_6:64290190-64290403:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.2740173339844	2	446.27417	890.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.821	1	32.821	32.321	33.321	0								0	0	0	1.7419	1	10635	10635		31.955	6.5047	1				13143	8957	8485	8518	13339	13339					0.0841409885961184
GKRRSKKR	8	Unmodified	_GKRRSKKR_					0	0	0		ZC3H4|p.E114G|1|0.31|ENSG00000130749|chr19:47094429-47094429|T/C|missense_variant	ZC3H4|p.E114G|1|0.31|ENSG00000130749|chr19:47094429-47094429|T/C|missense_variant	ZC3H4|p.E114G|1|0.31|ENSG00000130749|chr19:47094429-47094429|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3346252441406	2	508.333416	1014.65228	2.9729	0.0015112	-0.51139	-0.00025996	2.4615	0.0012513	508.33316564852936	19.765	0.32076	19.765	19.706	20.027	0					13	6	4	0	0	0	0.53709	1	6178	6178		54.776	20.604	1	2272800			13144	23131	8486	8519	13340	13340					0.1455389088798711
GKRSFTALY	9	Unmodified	_GKRSFTALY_					0	0	0			REV__ENST00000487066.5_1_17:16344775-16344985:+|nuORF	REV__ENST00000487066.5_1_17:16344775-16344985:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.1943054199219	3	348.194186	1041.56073	0.33689	0.0001173	-0.43097	-0.00015006	-0.094087	-3.276E-05	348.19402400857894	25.561	0.16068	25.561	25.459	25.62	0					6	3	2	0	0	0	0.57706	1	9102	9102		31.53	9.8441	1	67751	+		13145	19674	8487	8520	13341	13341					0.04161162680134112
GKSDPYVKL	9	Unmodified	_GKSDPYVKL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7821350097656	2	503.782025	1005.5495	-0.47472	-0.00023916	0.25218	0.00012704	-0.22254	-0.00011211	503.78212219622935	31.166	0.50094	31.166	30.88	31.381	0					20	11	3	0	0	0	0.30841	1	11736	11736		49.536	0.93449	1	212280			13146	4341	8488	8521	13342	13342					0.04694340585979262
GKSGRWRR	8	Unmodified	_GKSGRWRR_					0	0	0		KCNC2|p.S304Hfs*12|1|0.31|ENSG00000166006|chr12:75051095-75051095|A/-|frameshift_variant;KCNC2|p.V393Mfs*3|1|0.03|ENSG00000166006|chr12:75050828-75050829|-/AT|frameshift_variant;nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000166006|Q96PR1-5|KCNC2;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;nc|ENSG00000166006|Q96PR1-2|KCNC2;ENSG00000166006|ENST00000549446|KCNC2	KCNC2|p.S304Hfs*12|1|0.31|ENSG00000166006|chr12:75051095-75051095|A/-|frameshift_variant	KCNC2|p.S304Hfs*12|1|0.31|ENSG00000166006|chr12:75051095-75051095|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.8626403808594	3	334.861653	1001.56313	1.6195	0.00054232	1.0204	0.0003417	2.64	0.00088402	334.8619797475704	16.723	0.65918	16.723	16.634	17.293	0					21	13	3	0	0	0	0.69548	1	4684	4684		34.173	34.173	1	1583700			13147	5851	8489	8522	13343	13343					0.062410559284558076
GKSHCKNLPHG	11	Unmodified	_GKSHCKNLPHG_					0	0	0			REV__ENST00000282541.9_1_3:32208294-32208585:+|nuORF	REV__ENST00000282541.9_1_3:32208294-32208585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.7951049804688	2	589.298381	1176.58221	-0.43686	-0.00025744	-0.72095	-0.00042486	-1.1578	-0.0006823	589.2981996594656	28.955	0.82287	28.955	28.668	29.491	0					72	32	3	0	0	0	0.68382	1	9305	9305		29.17	1.2878	1	351420	+		13148	18135	8490	8523	13344	13344					0.0009822443716984708
GKSWAKVHLMF	11	Unmodified	_GKSWAKVHLMF_					0	0	0		ENST00000425455.2_1_1:121244673-121244892:+|nuORF	ENST00000425455.2_1_1:121244673-121244892:+|nuORF	ENST00000425455.2_1_1:121244673-121244892:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.5709533691406	3	435.237509	1302.6907	-0.42819	-0.00018637	-1.379	-0.00060021	-1.8072	-0.00078658	435.5711649010065	13.817	0.16472	13.817	13.733	13.897	0					6	4	2	0	0	0	0.66915	1	3238	3238		30.569	13.402	1	321910			13149	9435	8491	8524	13345	13345					0.05146015687591898
GKSYPIRKK	9	Unmodified	_GKSYPIRKK_					0	0	0			REV__ENSG00000159184|ENST00000290295|HOXB13	REV__ENSG00000159184|ENST00000290295|HOXB13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.8334350585938	2	538.832383	1075.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.028	1	14.028	13.528	14.528	0								0	0	0	0.34845	1	3550	3550		25.574	2.5316	1		+		13150	15705	8492	8525	13346	13346					0.1154141735948997
GKTAGKGG	8	Unmodified	_GKTAGKGG_					0	0	0		ENST00000519932.5_1_6:112575345-112575919:-|nuORF	ENST00000519932.5_1_6:112575345-112575919:-|nuORF	ENST00000519932.5_1_6:112575345-112575919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.1934814453125	2	338.192845	674.371138	1.4834	0.00050169	0.60169	0.00020349	2.0851	0.00070517	338.1929583477744	45.567	0.4588	45.567	45.449	45.908	0					55	25	3	0	0	0	0.78122	1	17599	17599		8.2313	3.915	1	930090			13151	10291	8493	8526	13347	13347					0.02092715457615668
GKTAGKGG	8	Unmodified	_GKTAGKGG_					0	0	0		ENST00000519932.5_1_6:112575345-112575919:-|nuORF	ENST00000519932.5_1_6:112575345-112575919:-|nuORF	ENST00000519932.5_1_6:112575345-112575919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.1932678222656	2	338.192845	674.371138	3.0175	0.0010205	-1.0438	-0.00035302	1.9736	0.00066747	338.1923942687579	43.622	1.1291	43.622	43.485	44.614	0					73	41	4	0	0	0	0.7887	1	17654	17654		12.959	0	1	4557600			13152	10291	8493	8526	13348	13348					0.02092715457615668
GKTAVTKFP	9	Unmodified	_GKTAVTKFP_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7798767089844	2	474.779285	947.544017	-0.44232	-0.00021	0.56373	0.00026765	0.12141	5.7642E-05	474.77976504615384	37.726	0.13792	37.726	37.649	37.787	0					10	6	2	0	0	0	0.48389	1	13491	13491		34.173	1.3601	1	43165	+		13153	12155	8494	8527	13349	13349					0.06814661794192034
GKTFKMYH	8	Unmodified	_GKTFKMYH_					0	0	0			REV__nc|ENSG00000171056|Q9BT81-2|SOX7	REV__nc|ENSG00000171056|Q9BT81-2|SOX7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.25634765625	2	506.257662	1010.50077	-0.0791	-4.0045E-05	-2.8985	-0.0014674	-2.9776	-0.0015074	506.256388156866	17.017	0.09466	17.017	16.978	17.073	0					6	3	2	0	0	0	0.79719	1	3978	3978		18.324	0.062328	1	103680	+		13154	21118	8495	8528	13350	13350					-0.004058512547430837
GKTRVMGGLK	10	Oxidation (M)	_GKTRVM(Oxidation (M))GGLK_		GKTRVM(1)GGLK		GKTRVM(43)GGLK	0	0	1			REV__ENST00000454429.2_1_9:33799890-33818714:-|nuORF	REV__ENST00000454429.2_1_9:33799890-33818714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.8086547851562	2	531.808051	1061.60155	0.31304	0.00016648	1.0771	0.00057281	1.3901	0.00073929	531.8085179281733	34.154	0.37868	34.154	34.02	34.399	0					33	16	3	0	0	0	0.52275	1	11485	11485		42.864	7.7122	1	164680	+		13155	19337	8496	8529	13351	13351		711			0.07321180728104082
GKTTLETLLI	10	Unmodified	_GKTTLETLLI_					0	0	0			REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF	REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.5572204589844	3	363.556902	1087.64888	1.1045	0.00040156	-0.21918	-7.9685E-05	0.88535	0.00032188	363.55684400292745	17.421	0.2172	17.421	17.363	17.58	0					9	4	3	0	0	0	0.70274	1	5034	5034		21.686	21.686	1	2026800	+		13156	17313	8497	8530	13352	13352					0.10855738480108812
GKVFVFPRE	9	Unmodified	_GKVFVFPRE_					0	0	0		APCS|p.K162Sfs*53|1|0.05|ENSG00000132703|chr1:159588520-159588521|-/GCACAGAGTCCCACATGTAC|frameshift_variant;ENSG00000132703|ENST00000255040|APCS	APCS|p.K162Sfs*53|1|0.05|ENSG00000132703|chr1:159588520-159588521|-/GCACAGAGTCCCACATGTAC|frameshift_variant	APCS|p.K162Sfs*53|1|0.05|ENSG00000132703|chr1:159588520-159588521|-/GCACAGAGTCCCACATGTAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8067626953125	2	539.805834	1077.59712	0.26189	0.00014137	0.63148	0.00034088	0.89337	0.00048225	539.8061558489751	29.972	0.36642	29.972	29.839	30.206	0					21	9	3	0	0	0	0.28897	1	10744	10744		44.117	4.864	1	459960			13157	184	8498	8531	13353	13353					0.06142039576843672
GKVLDHAM	8	Unmodified	_GKVLDHAM_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.7281494140625	2	435.728738	869.442923	-0.6373	-0.00027769	-0.38041	-0.00016576	-1.0177	-0.00044345	435.72853534384825	25.173	0.094618	25.173	25.128	25.222	0					4	2	2	0	0	0	0.68754	1	7978	7978		35.201	3.2459	1	52642			13158	6458	8499	8532	13354	13354					0.002978868198283635
GKVTPKTG	8	Unmodified	_GKVTPKTG_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.23760986328125	2	394.237253	786.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.434	1	32.434	31.934	32.934	0								0	0	0	1.7419	1	10486	10486		37.159	0	1		+		13159	13049	8500	8533	13355	13355					0.05818130697264223
GKWITTFC	8	Unmodified	_GKWITTFC_					0	0	0		ENSG00000095110|ENST00000534921|NXPE1;nc|ENSG00000095110|Q8N323-2|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2405700683594	2	478.238938	954.463324	3.4529	0.0016513	-0.30708	-0.00014686	3.1458	0.0015045	478.2387972355201	36.644	0.1989	36.644	36.559	36.757	0					13	10	2	0	0	0	0.5676	1	12396	12396		53.351	53.351	1	170000			13160	1894	8501	8534	13356	13356					-0.015729425203858227
GLAAAPDKVT	10	Unmodified	_GLAAAPDKVT_					0	0	0			REV__ENST00000341068.7_1_2:112641540-112641732:-|nuORF	REV__ENST00000341068.7_1_2:112641540-112641732:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.24053955078125	2	471.766374	941.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.146	1	20.146	19.646	20.646	0								0	0	0	0.37129	1	5609	5609		39.253	5.0803	1		+		13161	18449	8502	8535	13357	13357					0.04509767551905952
GLAAARTRR	9	Unmodified	_GLAAARTRR_					0	0	0			REV__ENST00000474018.1_1_6:170101867-170102065:-|nuORF	REV__ENST00000474018.1_1_6:170101867-170102065:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.5341796875	3	324.533425	970.578445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.472	1	21.472	20.972	21.972	0								0	0	0	0.34907	1	5920	5920		25.574	2.0514	1		+		13162	19511	8503	8536	13358	13358					0.09197922725650187
GLAAFRWI	8	Unmodified	_GLAAFRWI_					0	0	0		CCDC127|p.C174*|1|0.12|ENSG00000164366|chr5:205558-205558|G/-|frameshift_variant;ENSG00000164366|ENST00000296824|CCDC127	CCDC127|p.C174*|1|0.12|ENSG00000164366|chr5:205558-205558|G/-|frameshift_variant	CCDC127|p.C174*|1|0.12|ENSG00000164366|chr5:205558-205558|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2736511230469	2	467.268887	932.523222	2.6427	0.0012349	4.2938	0.0020064	6.9365	0.0032412	467.2715126645487	34.967	0.80919	34.967	34.555	35.364	0					47	16	4	0	0	0	0.61433	1	13488	13488		46.766	2.2354	1	592000			13163	395	8504	8537	13359	13359					0.05426116205183007
GLAAMVGAISG	11	Oxidation (M)	_GLAAM(Oxidation (M))VGAISG_		GLAAM(1)VGAISG		GLAAM(48)VGAISG	0	0	1			REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1	REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.26025390625	2	481.75241	961.490267	0.68947	0.00033215	2.0114	0.00096902	2.7009	0.0013012	481.75210948781114	28.968	0.38841	28.968	28.863	29.251	0					13	8	2	0	0	0	0.45317	1	10732	10732		47.657	7.0847	1	3589400	+		13164	16616	8505	8538	13360	13360		633			0.007981213001926335
GLAATLYSLK	10	Unmodified	_GLAATLYSLK_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000508319.1_1_5:43294149-43294911:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.8051147460938	2	518.8055	1035.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.659	1	10.659	10.159	11.159	0								0	0	0	0.4201	1	2065	2065		9.7057	2.0154	1				13165	2771	8506	8539	13361	13361					0.08007200137126347
GLAGGGVL	8	Unmodified	_GLAGGGVL_					0	0	0		ENST00000405486.5_2_22:41641775-41642279:-|nuORF	ENST00000405486.5_2_22:41641775-41642279:-|nuORF	ENST00000405486.5_2_22:41641775-41642279:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.1930847167969	2	322.192314	642.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.835	1	23.835	23.335	24.335	0								0	0	0	1.7419	1	6952	6952		33.493	8.989	1				13166	9278	8507	8540	13362	13362					0.03458501088709909
GLAGKVERN	9	Unmodified	_GLAGKVERN_					0	0	0			REV__ENSG00000238243|ENST00000360358|OR2W3	REV__ENSG00000238243|ENST00000360358|OR2W3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2694091796875	2	472.269616	942.524678	-0.58254	-0.00027512	0.14661	6.9237E-05	-0.43594	-0.00020588	472.26963519235346	13.58	0.14259	13.58	13.482	13.624	0					11	4	3	0	0	0	0.32741	1	3101	3101		47.916	0	1	228690	+		13167	17671	8508	8541	13363	13363					0.051117055032818826
GLAHHRLSH	9	Unmodified	_GLAHHRLSH_					0	0	0		ENSG00000174586|ENST00000311044|ZNF497	ENSG00000174586|ENST00000311044|ZNF497	ENSG00000174586|ENST00000311044|ZNF497	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2833862304688	2	514.280849	1026.54715	-0.18868	-9.7036E-05	2.5715	0.0013225	2.3828	0.0012254	514.2828753983637	24.72	0.66021	24.72	24.313	24.973	0					26	22	2	0	0	0	0.47473	1	7604	7604		27.882	0	1	79873			13168	6501	8509	8542	13364	13364					0.03493349691552794
GLAIHQVLTK	10	Unmodified	_GLAIHQVLTK_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.5574035644531	3	360.557236	1078.64988	0.72896	0.00026283	-0.51461	-0.00018555	0.21434	7.7283E-05	360.55699528670965	18.969	0.1184	18.969	18.896	19.015	0					9	3	3	0	0	0	0.45669	1	5656	5656		50.034	14.881	1	506360			13169	3447	8510	8543	13365	13365					0.1136999763964468
GLAKVLSVP	9	Unmodified	_GLAKVLSVP_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2837219238281	2	442.284203	882.553853	-2.922	-0.0012924	2.6442	0.0011695	-0.27776	-0.00012285	442.2853839542127	39.174	0.26271	39.174	39.049	39.312	0					16	13	2	0	0	0	0.35045	1	13966	13966		45.952	0	1	53200	+		13170	14453	8511	8544	13366	13366					0.10787849799567084
GLALLEDIK	9	Unmodified	_GLALLEDIK_					0	0	0			REV__TPR|p.T205I|1|0.21|ENSG00000047410|chr1:186362919-186362919|G/A|missense_variant	REV__TPR|p.T205I|1|0.21|ENSG00000047410|chr1:186362919-186362919|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.29241943359375	2	486.292225	970.569897	-0.08698	-4.2298E-05	0.06183	3.0067E-05	-0.02515	-1.223E-05	486.292194872301	34.476	0.41743	34.476	34.185	34.602	0					23	10	3	0	0	0	0.32741	1	13227	13227		47.916	0	1	183140	+		13171	21663	8512	8545	13367	13367					0.08343511245800528
GLALSSVRLR	10	Unmodified	_GLALSSVRLR_					0	0	0		CD14|p.L147V|1|0.31|ENSG00000170458|chr5:140632545-140632545|A/C|missense_variant	CD14|p.L147V|1|0.31|ENSG00000170458|chr5:140632545-140632545|A/C|missense_variant	CD14|p.L147V|1|0.31|ENSG00000170458|chr5:140632545-140632545|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.89251708984375	3	357.892619	1070.65603	0.87194	0.00031206	-1.1391	-0.00040767	-0.26716	-9.5614E-05	357.8922074729054	20.218	0.11121	20.218	20.164	20.275	0					4	2	2	0	0	0	0.59277	1	6249	6249		35.152	0	1	154740			13172	421	8513	8546	13368	13368					0.12352515871180003
GLANLNPVTW	10	Unmodified	_GLANLNPVTW_					0	0	0		nc|ENSG836|P61566|ERVK-24_env;nc|ENSG833|P61570|ERVK-25_env;nc|ENSG840|P61565|ERVK-21_env;nc|ENSG811|Q9UKH3|ERVK-9_env;nc|ENSG845|O71037|ERVK-19_env;nc|ENSG825|Q69384|ERVK-6_env;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG849|O42043|ERVK-18_env;nc|ENSG819|P61567|ERVK-7_env;nc|ENSG815|Q902F8|ERVK-8_env	nc|ENSG836|P61566|ERVK-24_env	nc|ENSG836|P61566|ERVK-24_env	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.1977233886719	3	362.197708	1083.57129	0.47962	0.00017372	-0.5724	-0.00020732	-0.09278	-3.3605E-05	362.19745620042454	16.188	0.14055	16.188	16.096	16.236	0					8	3	3	0	0	0	0.66185	1	4347	4347		25.126	0	1	225420			13173	11835	8514	8547	13369	13369					0.032851453345756454
GLAPILGPGSG	11	Unmodified	_GLAPILGPGSG_					0	0	0		nc|ENSG00000178928|Q8N7U7-2|TPRX1;nc|ENSG00000178928|Q8N7U7|TPRX1;ENSG00000178928|ENST00000698655|TPRX1	nc|ENSG00000178928|Q8N7U7-2|TPRX1	nc|ENSG00000178928|Q8N7U7-2|TPRX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7685241699219	2	469.768917	937.523281	0.011286	5.302E-06	-0.11819	-5.5522E-05	-0.1069	-5.022E-05	469.7688698963434	20.421	0.25307	20.421	20.277	20.53	0					14	8	3	0	0	0	0.3828	1	5441	5441		53.351	9.2347	1	90998			13174	6739	8515	8548	13370	13370					0.05202071414544207
GLAPPQPR	8	Unmodified	_GLAPPQPR_					0	0	0		ENST00000321930.4_17:78977795-78978311:+|nuORF	ENST00000321930.4_17:78977795-78978311:+|nuORF	ENST00000321930.4_17:78977795-78978311:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	418.2427673339844	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.533	1	20.533	20.033	21.033	0								0	0	0	1.7419	1	5512	5512		35.201	0	1				13175	8621	8516	8549	13371	13371					0.04732952791414391
GLAPPQPR	8	Unmodified	_GLAPPQPR_					0	0	0		ENST00000321930.4_17:78977795-78978311:+|nuORF	ENST00000321930.4_17:78977795-78978311:+|nuORF	ENST00000321930.4_17:78977795-78978311:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.2427062988281	2	418.24287	834.471186	-0.85567	-0.00035788	0.64438	0.00026951	-0.21129	-8.8368E-05	418.2431133139061	20.842	0.36855	20.842	20.642	21.01	0					14	8	3	0	0	0	0.59411	1	6545	6545		50.025	0	1	366700			13176	8621	8516	8549	13372	13372					0.04732952791414391
GLAQGFLRE	9	Unmodified	_GLAQGFLRE_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.77203369140625	2	495.771991	989.529429	-0.037103	-1.8395E-05	0.38813	0.00019243	0.35103	0.00017403	495.77231530185713	23.72	0.71623	23.72	23.562	24.278	0					34	14	4	0	0	0	0.35045	1	8365	8365		45.952	3.5558	1	21925000	+		13177	19797	8517	8550	13373	13373					0.03424589646022014
GLAQPVGINT	10	Unmodified	_GLAQPVGINT_					0	0	0		ENSG00000108688|ENST00000378569|CCL7	ENSG00000108688|ENST00000378569|CCL7	ENSG00000108688|ENST00000378569|CCL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2715148925781	2	485.271824	968.529095	-1.2362	-0.00059991	0.14763	7.1639E-05	-1.0886	-0.00052827	485.27197930414195	20.442	0.14427	20.442	20.359	20.503	0					6	4	2	0	0	0	0.50881	1	5716	5716		44.377	1.9027	1	75951			13178	2546	8518	8551	13374	13374					0.04357169926197457
GLARTVNEL	9	Unmodified	_GLARTVNEL_					0	0	0			REV__nc|ENSG00000105143|P48664-2|SLC1A6	REV__nc|ENSG00000105143|P48664-2|SLC1A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.77667236328125	2	486.777274	971.539994	-2.9121	-0.0014175	1.8848	0.0009175	-1.0273	-0.00050005	486.7781326641171	31.842	0.15198	31.842	31.771	31.923	0					8	5	2	0	0	0	0.22377	1	11012	11012		58.782	4.0056	1	130320	+		13179	13755	8519	8552	13375	13375					0.053085723004642205
GLASFCLAW	9	Unmodified	_GLASFCLAW_					0	0	0			REV__ENSG00000174945|ENST00000683327|AMZ1	REV__ENSG00000174945|ENST00000683327|AMZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2397766113281	2	484.238938	966.463324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.884	1	20.884	20.384	21.384	0								0	0	0	0.15865	1	6838	6838		57.811	2.3071	1		+		13180	16593	8520	8553	13376	13376					-0.021249425203677674
GLASIQPSK	9	Unmodified	_GLASIQPSK_					0	0	0		nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2584228515625	2	450.761092	899.507631	-0.10481	-4.7243E-05	-2.2534	-0.0010157	-2.3582	-0.001063	450.7608611953679	22.249	0.60658	22.249	22.07	22.677	0					31	12	4	0	0	0	0.35021	1	7574	7574		45.972	5.3996	1	1540800			13181	6039	8521	8554	13377	13377					0.053857848974644185
GLASSNKKT	9	Unmodified	_GLASSNKKT_					0	0	0			REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|21|2|sense	REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|21|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2560729980469	2	453.256174	904.497795	0.691	0.0003132	-1.3204	-0.00059847	-0.62938	-0.00028527	453.25558371619815	21.963	0.87447	21.963	21.823	22.698	0					44	20	4	0	0	0	0.47038	1	7304	7304		35.618	0	1	28032000	+		13182	21614	8522	8555	13378	13378					0.0417259689210141
GLASSPEKIV	10	Unmodified	_GLASSPEKIV_					0	0	0		ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA	ENSG00000063169|ENST00000594866|BICRA	ENSG00000063169|ENST00000594866|BICRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.1943359375	3	334.193963	999.560061	0.25323	8.4628E-05	0.64041	0.00021402	0.89364	0.00029865	334.1942278598214	24.306	0.24135	24.306	24.155	24.396	0					16	8	2	0	0	0	0.65213	1	7146	7146		32.751	0	1	132070			13183	1337	8523	8556	13379	13379					0.06026323240428155
GLASVACTFHS	11	Unmodified	_GLASVACTFHS_					0	0	0			REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7622680664062	2	546.760766	1091.50698	0.33797	0.00018479	2.78	0.00152	3.118	0.0017048	546.7622712971878	20.704	0.21833	20.704	20.595	20.813	0					9	4	3	0	0	0	0.45317	1	6763	6763		47.657	1.6851	1	239630	+		13184	14753	8524	8557	13380	13380					-0.035113778139020724
GLAYTWSI	8	Unmodified	_GLAYTWSI_					0	0	0			REV__ENSG00000073598|ENST00000158009|FNDC8	REV__ENSG00000073598|ENST00000158009|FNDC8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.7350158691406	2	455.737086	909.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.462	1	28.462	27.962	28.962	0								0	0	0	1.7419	1	10060	10060		79.939	5.4226	1		+		13185	13206	8525	8558	13381	13381					0.0012671097742895654
GLCHFSIVD	9	Unmodified	_GLCHFSIVD_					0	0	0			REV__nc|ENSG00000134333|P00338-2|LDHA	REV__nc|ENSG00000134333|P00338-2|LDHA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7393493652344	2	495.739302	989.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.559	1	41.559	41.059	42.059	0								0	0	0	0.31623	1	16341	16341		31.955	0	1		+		13186	21024	8526	8559	13382	13382					-0.031101478713253528
GLCIHCSLQG	10	Unmodified	_GLCIHCSLQG_					0	0	0		TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant	TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.74609375	2	515.744062	1029.47357	1.5113	0.00077943	2.4299	0.0012532	3.9411	0.0020326	515.7454013444309	40.581	0.59176	40.581	40.439	41.03	0					17	11	2	0	0	0	0.55603	1	16138	16138		39.253	2.0937	1	98524			13187	6793	8527	8560	13383	13383					-0.03998702857461467
GLCLKICY	8	2 Carbamidomethyl (C)	_GLC(Carbamidomethyl (C))LKIC(Carbamidomethyl (C))Y_	GLC(1)LKIC(1)Y		GLC(45)LKIC(45)Y		0	2	0		nc|ENSG00000172575|O95267-4|RASGRP1;nc|ENSG00000172575|O95267-5|RASGRP1;nc|ENSG00000172575|O95267-3|RASGRP1;nc|ENSG00000172575|O95267-2|RASGRP1;ENSG00000172575|ENST00000310803|RASGRP1	nc|ENSG00000172575|O95267-4|RASGRP1	nc|ENSG00000172575|O95267-4|RASGRP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.7586669921875	2	513.759181	1025.50381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.946	1	36.946	36.446	37.446	0								0	0	0	1.7419	1	13228	13228		44.531	10.359	1				13188	6371	8528	8561	13384	13384	270;271				-0.007923441922457641
GLCRTDKE	8	Unmodified	_GLCRTDKE_					0	0	0			REV__nc|ENSG00000113520|P05112-2|IL4	REV__nc|ENSG00000113520|P05112-2|IL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.226806640625	2	461.226559	920.438566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.702	1	12.702	12.202	13.202	0								0	0	0	1.7419	1	2727	2727		23.042	0	1		+		13189	14042	8529	8562	13385	13385					-0.02483622393742735
GLDEGKLEI	9	Unmodified	_GLDEGKLEI_					0	0	0			REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.17852783203125	3	325.178202	972.512776	0.55711	0.00018116	0.33287	0.00010824	0.88998	0.0002894	325.1782420942031	16.105	0.21729	16.105	15.996	16.213	0					8	4	2	0	0	0	0.35021	1	4549	4549		45.972	4.5456	1	540390	+		13190	21909	8530	8563	13386	13386					0.025420439694244124
GLDGCFIR	8	Unmodified	_GLDGCFIR_					0	0	0			REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.72064208984375	2	440.720913	879.427273	-0.54304	-0.00023933	0.093316	4.1126E-05	-0.44973	-0.0001982	440.7209697424446	28.418	1.5144	28.418	27.91	29.424	0					39	30	2	0	0	0	0.70055	1	10403	10403		33.516	0	1	2202200	+		13191	14462	8531	8564	13387	13387					-0.0172639969721331
GLDLLAPWL	9	Unmodified	_GLDLLAPWL_					0	0	0			REV__ENST00000570817.5_1_17:79163571-79163706:-|nuORF	REV__ENST00000570817.5_1_17:79163571-79163706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.28973388671875	2	499.289485	996.564418	-1.0623	-0.00053038	1.6584	0.000828	0.59609	0.00029762	499.2904713763471	40.059	0.089577	40.059	40.024	40.114	0					8	5	2	0	0	0	0.50461	1	13432	13432		31.955	1.4512	1	51900	+		13192	20377	8532	8565	13388	13388					0.06599832453969157
GLDLRLAVQ	9	Unmodified	_GLDLRLAVQ_					0	0	0		ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.79534912109375	2	492.795466	983.57638	-0.015448	-7.6127E-06	-0.8255	-0.0004068	-0.84095	-0.00041441	492.7947682704824	19.155	0.53431	19.155	18.928	19.463	0					16	12	2	0	0	0	0.24095	1	5155	5155		56.721	5.3856	1	272020			13193	6344	8533	8566	13389	13389					0.08393449197183145
GLDMAPLLQ	9	Unmodified	_GLDMAPLLQ_					0	0	0			REV__ENST00000566733.2_1_6:3911567-3911663:-|nuORF	REV__ENST00000566733.2_1_6:3911567-3911663:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.25897216796875	2	479.257328	956.500103	2.2809	0.0010932	0.89648	0.00042964	3.1774	0.0015228	479.2579554283855	12.519	0.21003	12.519	12.439	12.649	0					7	5	2	0	0	0	0.24095	1	2696	2696		56.721	0	1	504760	+		13194	20348	8534	8567	13390	13390					0.020113093055329045
GLEAKHGL	8	Unmodified	_GLEAKHGL_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.73480224609375	2	412.734877	823.455202	0.62646	0.00025856	-0.74005	-0.00030544	-0.11359	-4.6883E-05	412.7344586165254	17.561	0.1069	17.561	17.495	17.602	0					5	3	2	0	0	0	0.52345	1	4218	4218		57.811	4.4598	1	150500	+		13195	15198	8535	8568	13391	13391					0.03641246554514055
GLEAKHGL	8	Unmodified	_GLEAKHGL_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.7350158691406	2	412.734877	823.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.688	1	17.688	17.188	18.188	0								0	0	0	1.7419	1	4462	4462		47.916	5.4411	1		+		13196	15198	8535	8568	13392	13392					0.03641246554514055
GLEARPEVV	9	Unmodified	_GLEARPEVV_					0	0	0		ENST00000567674.1_1_16:68721613-68732300:+|nuORF;nc|ENSG00000062038|P22223-2|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3	ENST00000567674.1_1_16:68721613-68732300:+|nuORF	ENST00000567674.1_1_16:68721613-68732300:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.27191162109375	2	485.271824	968.529095	-0.25066	-0.00012164	0.16385	7.9512E-05	-0.08681	-4.2127E-05	485.2719139587301	20.483	0.13525	20.483	20.434	20.569	0					8	3	3	0	0	0	0.42902	1	5781	5781		39.253	1.4413	1	130150			13197	1328	8536	8569	13393	13393					0.043571699261860886
GLEDCPGVKE	10	Carbamidomethyl (C)	_GLEDC(Carbamidomethyl (C))PGVKE_	GLEDC(1)PGVKE		GLEDC(64)PGVKE		0	1	0		ARMCX1|p.V187Gfs*18|1|0.36|ENSG00000126947|chrX:101553482-101553483|-/TGGCC|frameshift_variant;ENSG00000126947|ENST00000372829|ARMCX1	ARMCX1|p.V187Gfs*18|1|0.36|ENSG00000126947|chrX:101553482-101553483|-/TGGCC|frameshift_variant	ARMCX1|p.V187Gfs*18|1|0.36|ENSG00000126947|chrX:101553482-101553483|-/TGGCC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.25732421875	2	552.255514	1102.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.377	1	16.377	15.877	16.877	0								0	0	0	0.19992	1	4668	4668		64.207	14.766	1				13198	227	8537	8570	13394	13394	11				-0.05067405258978397
GLEEQARQAM	10	Oxidation (M)	_GLEEQARQAM(Oxidation (M))_		GLEEQARQAM(1)		GLEEQARQAM(48)	0	0	1		ENSG00000102984|ENST00000425432|ZNF821	ENSG00000102984|ENST00000425432|ZNF821	ENSG00000102984|ENST00000425432|ZNF821	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.2736206054688	2	574.771862	1147.52917	-0.1739	-9.9955E-05	0.83228	0.00047837	0.65838	0.00037842	574.7723039030768	39.794	0.14068	39.794	39.725	39.866	0					12	8	2	0	0	0	0.47859	1	13360	13360		47.657	6.8792	1	71080			13199	2204	8538	8571	13395	13395		99			-0.0386919813613531
GLEGGGIFFL	10	Unmodified	_GLEGGGIFFL_					0	0	0		ENST00000605945.1_1_6:28048508-28048712:-|nuORF	ENST00000605945.1_1_6:28048508-28048712:-|nuORF	ENST00000605945.1_1_6:28048508-28048712:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2733154296875	2	505.271293	1008.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.966	1	39.966	39.466	40.466	0								0	0	0	0.40002	1	13408	13408		30.504	2.6214	1				13200	11075	8539	8572	13396	13396					0.02410955557274974
GLEGSSRAP	9	Unmodified	_GLEGSSRAP_					0	0	0			REV__ENST00000515213.1_1_7:420976-421372:+|nuORF	REV__ENST00000515213.1_1_7:420976-421372:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2254333496094	2	437.224874	872.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.162	1	14.162	13.662	14.662	0								0	0	0	0.3304	1	2876	2876		29.15	0	1		+		13201	19909	8540	8573	13397	13397					-0.006125491761054036
GLELSVKKV	9	Unmodified	_GLELSVKKV_					0	0	0			REV__ENST00000467370.5_1_3:125824416-125834086:-|nuORF	REV__ENST00000467370.5_1_3:125824416-125834086:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.8743591308594	3	324.874454	971.601532	0.0088226	2.8662E-06	-0.18276	-5.9373E-05	-0.17393	-5.6507E-05	324.8743383697488	20.751	0.21648	20.751	20.692	20.909	0					8	4	3	0	0	0	0.39215	1	6655	6655		41.427	0	1	569320	+		13202	15250	8541	8574	13398	13398					0.11459503999753906
GLEVSTAIAEK	11	Unmodified	_GLEVSTAIAEK_					0	0	0			REV__nc|ENSG00000163554|P02549-2|SPTA1	REV__nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20989990234375	3	373.208161	1116.60265	3.2233	0.0012029	0.78366	0.00029247	4.0069	0.0014954	373.2086851413715	22.261	5.8436	22.261	21.953	27.797	0					242	115	5	0	0	0	0.3224	1	7727	7727		60.167	14.259	1	47596000	+		13203	15893	8542	8575	13399	13399					0.04901673577978727
GLFDQVRGV	9	Unmodified	_GLFDQVRGV_					0	0	0			REV__ENSG00000162040|ENST00000454677|HS3ST6	REV__ENSG00000162040|ENST00000454677|HS3ST6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.8514709472656	3	330.85042	989.529429	3.0057	0.00099443	-0.022858	-7.5627E-06	2.9828	0.00098687	330.8504675586761	22.113	0.21558	22.113	22.054	22.27	0					7	4	3	0	0	0	0.53083	1	7319	7319		29.17	0	1	828790	+		13204	15797	8543	8576	13400	13400					0.03424589646044751
GLFEKRARPVM	11	Unmodified	_GLFEKRARPVM_					0	0	0		ENSG00000135972|ENST00000258455|MRPS9	ENSG00000135972|ENST00000258455|MRPS9	ENSG00000135972|ENST00000258455|MRPS9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2509460449219	3	435.248297	1302.72306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.122	1	48.122	47.622	48.622	0								0	0	0	0.45674	1	19145	19145		19.263	3.342	1				13205	4043	8544	8577	13401	13401					0.08380803090608424
GLFGNLSLI	9	Unmodified	_GLFGNLSLI_					0	0	0		nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.273193359375	2	467.273835	932.533118	-2.2095	-0.0010325	-0.02139	-9.995E-06	-2.2309	-0.0010424	467.2741057506053	34.964	0.67393	34.964	34.48	35.153	0					38	21	2	0	0	0	0.13519	1	12320	12320		71.296	5.4925	1	149430			13206	11833	8545	8578	13402	13402					0.06415259419895847
GLFGPKPLLA	10	Unmodified	_GLFGPKPLLA_					0	0	0			REV__ENSG00000130675|ENST00000252971|MNX1	REV__ENSG00000130675|ENST00000252971|MNX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.8130798339844	2	506.813128	1011.6117	1.2743	0.00064581	-1.1058	-0.00056041	0.16851	8.5403E-05	506.81238531246305	40.934	1.1778	40.934	40.748	41.926	0					57	27	3	0	0	0	0.59277	1	16238	16238		30.504	5.0535	1	299940	+		13207	14590	8546	8579	13403	13403					0.10636111724977582
GLFIFEKVR	9	Unmodified	_GLFIFEKVR_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8311767578125	2	554.829309	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.716	1	23.716	23.216	24.216	0								0	0	0	0.3063	1	8209	8209		26.693	0	1		+		13208	16647	8547	8580	13404	13404					0.09454899127990757
GLFLIGEKG	9	Unmodified	_GLFLIGEKG_					0	0	0			REV__ENST00000441363.1_1_6:74009094-74009619:+|nuORF	REV__ENST00000441363.1_1_6:74009094-74009619:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7726745605469	2	467.273835	932.533118	-0.50665	-0.00023674	-0.80231	-0.0003749	-1.309	-0.00061164	467.2739313180902	35.081	0.71245	35.081	34.635	35.347	0					37	14	3	0	0	0	0.47038	1	13572	13572		35.618	0.41757	1	628740	+		13209	19239	8548	8581	13405	13405					0.06415259419907215
GLFLYPVGL	9	Unmodified	_GLFLYPVGL_					0	0	0		AOC2|p.H235Y|1|0.11|ENSG00000131480|chr17:42845329-42845329|C/T|missense_variant	AOC2|p.H235Y|1|0.11|ENSG00000131480|chr17:42845329-42845329|C/T|missense_variant	AOC2|p.H235Y|1|0.11|ENSG00000131480|chr17:42845329-42845329|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	326.8587951660156	3	326.860145	977.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.154	1	21.154	20.654	21.654	0								0	0	0	0.36266	1	6081	6081		21.96	1.013	1				13210	171	8549	8582	13406	13406					0.06892733942322593
GLFPHFRP	8	Unmodified	_GLFPHFRP_					0	0	0			REV__ENST00000412946.6_1_13:45915702-45915750:+|nuORF	REV__ENST00000412946.6_1_13:45915702-45915750:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7657775878906	2	485.766512	969.518471	-2.9146	-0.0014158	1.449	0.00070389	-1.4656	-0.00071194	485.76747651235405	17.019	1.7834	17.019	16.794	18.578	0					73	47	3	0	0	0	0.79176	1	4756	4756		21.702	0	1	321000	+		13211	19012	8550	8583	13407	13407					0.0324923206242147
GLFPTSGLAGP	11	Unmodified	_GLFPTSGLAGP_					0	0	0			REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2729187011719	2	508.7742	1015.53385	-0.39866	-0.00020283	1.5003	0.00076331	1.1016	0.00056048	508.7759835637291	29.498	0.20318	29.498	29.396	29.599	0					11	4	3	0	0	0	0.47622	1	10916	10916		45.972	0	1	690100	+		13212	17403	8551	8584	13408	13408					0.02670054068948957
GLFPVHAKGP	10	Unmodified	_GLFPVHAKGP_					0	0	0		GRM7|p.E384Kfs*28|1|0.36|ENSG00000196277|chr3:7415132-7415132|A/-|frameshift_variant;GRM7|p.W590Gfs*3|1|0.29|ENSG00000196277|chr3:7578669-7578669|C/-|frameshift_variant;GRM7|p.F809Lfs*21|1|0.35|ENSG00000196277|chr3:7579326-7579326|T/-|frameshift_variant;nc|ENSG00000196277|Q14831-5|GRM7;nc|ENSG00000196277|Q14831-3|GRM7;GRM7|p.K906Efs*6|1|0.11|ENSG00000196277|chr3:7740366-7740367|-/A|frameshift_variant;nc|ENSG00000196277|Q14831-4|GRM7;ENSG00000196277|ENST00000357716|GRM7;nc|ENSG00000196277|Q14831-2|GRM7	GRM7|p.E384Kfs*28|1|0.36|ENSG00000196277|chr3:7415132-7415132|A/-|frameshift_variant	GRM7|p.E384Kfs*28|1|0.36|ENSG00000196277|chr3:7415132-7415132|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.5319519042969	3	341.53091	1021.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.316	1	34.316	33.816	34.816	0								0	0	0	0.4201	1	12136	12136		18.262	2.6203	1				13213	7345	8552	8585	13409	13409					0.06097770405369829
GLFQATLIA	9	Unmodified	_GLFQATLIA_					0	0	0			REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.27349853515625	2	467.273835	932.533118	0.046686	2.1815E-05	-0.94882	-0.00044336	-0.90214	-0.00042155	467.2736449679653	34.804	0.63654	34.804	34.443	35.079	0					61	27	3	0	0	0	0.39215	1	11304	11304		42.396	1.8235	1	189930	+		13214	22119	8553	8586	13410	13410					0.06415259419907215
GLFQATLIA	9	Unmodified	_GLFQATLIA_					0	0	0			REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.27349853515625	2	467.273835	932.533118	0.36409	0.00017013	-2.0767	-0.00097038	-1.7126	-0.00080025	467.27335155984946	35.106	0.82125	35.106	34.573	35.394	0					62	21	4	0	0	0	0.2873	1	13169	13169		51.335	3.6781	1	1257200	+		13215	22119	8553	8586	13411	13411					0.06415259419907215
GLFYVFGIIL	10	Unmodified	_GLFYVFGIIL_					0	0	0		ENSG00000120942|ENST00000376810|UBIAD1	ENSG00000120942|ENST00000376810|UBIAD1	ENSG00000120942|ENST00000376810|UBIAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.3341064453125	2	571.336436	1140.65832	0.089603	5.1194E-05	-3.0742	-0.0017564	-2.9846	-0.0017052	571.334331768977	33.478	0.08091	33.478	33.434	33.515	0					5	3	2	0	0	0	0.59237	1	11244	11244		35.201	1.0282	1	46084			13216	3203	8554	8587	13412	13412					0.09361551556298764
GLGCDFRY	8	Unmodified	_GLGCDFRY_					0	0	0			REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7104187011719	2	465.710545	929.406537	-0.43885	-0.00020438	0.8387	0.00039059	0.39984	0.00018621	465.71087433149586	37.146	0.33692	37.146	37.009	37.346	0					29	18	2	0	0	0	0.70055	1	12142	12142		33.516	0	1	123750	+		13217	20792	8555	8588	13413	13413					-0.06098990076884547
GLGELRCRPG	10	Unmodified	_GLGELRCRPG_					0	0	0			REV__ENST00000460083.1_1_3:184080267-184080848:+|nuORF	REV__ENST00000460083.1_1_3:184080267-184080848:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.291748046875	2	529.2822	1056.54985	0.73269	0.0003878	0.037695	1.9951E-05	0.77039	0.00040775	529.2819975473117	35.645	0.46768	35.645	35.381	35.849	0					20	9	3	0	0	0	0.6796	1	13763	13763		24.519	0	1	1730800	+		13218	19348	8556	8589	13414	13414					0.02383437034200142
GLGGGVIF	8	Unmodified	_GLGGGVIF_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5;GGT5|p.I96S|1|0.1|ENSG00000099998|chr22:24233891-24233891|A/C|missense_variant;GGT5|p.H174Mfs*36|1|0.37|ENSG00000099998|chr22:24232900-24232900|C/-|frameshift_variant	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.206298828125	2	360.207964	718.401375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.076	1	48.076	47.576	48.576	0								0	0	0	1.7419	1	14655	14655		16.705	5.1939	1				13219	1958	8557	8590	13415	13415					0.030910741228126426
GLGGMKKV	8	Unmodified	_GLGGMKKV_					0	0	0			REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.9046325683594	2	395.236199	788.457844	-2.2231	-0.00087864	-1.7341	-0.00068539	-3.9572	-0.001564	395.23547491789225	31.162	0.14	31.162	31.059	31.199	0					6	4	2	0	0	0	0.78122	1	10706	10706		8.2313	8.2313	1	59782	+		13220	14350	8558	8591	13416	13416					0.05515378687823613
GLGGRGQPK	9	Unmodified	_GLGGRGQPK_					0	0	0		ENSG00000117215|ENST00000375105|PLA2G2D;nc|ENSG00000117215|Q9UNK4-2|PLA2G2D;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000117215|ENST00000375105|PLA2G2D	ENSG00000117215|ENST00000375105|PLA2G2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2510070800781	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.675	1	53.675	53.175	54.175	0								0	0	0	0.3304	1	20629	20629		29.15	2.3535	1				13221	3026	8559	8592	13417	13417					0.04839453677379879
GLGIEAYVKV	10	Unmodified	_GLGIEAYVKV_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant;DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.G2194Efs*14|1|0.34|ENSG00000158486|chr16:20997303-20997303|C/-|frameshift_variant;DNAH3|p.I2375Sfs*8|1|0.13|ENSG00000158486|chr16:20985619-20985619|T/-|frameshift_variant;ENST00000572640.5_1_16:21008599-21073979:-|nuORF	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.206787109375	3	350.206092	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.273	1	43.273	42.773	43.773	0								0	0	0	0.40002	1	17313	17313		35.152	9.0886	1				13222	5265	8560	8593	13418	13418					0.07455200137110296
GLGKTTLAH	9	Unmodified	_GLGKTTLAH_					0	0	0		ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;CHTF18|p.V386M|1|0.46|ENSG00000127586|chr16:791902-791902|G/A|missense_variant;ENST00000464728.5_1_16:841811-841949:+|nuORF	ENSG00000127586|ENST00000262315|CHTF18	ENSG00000127586|ENST00000262315|CHTF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2606201171875	2	449.261259	896.507966	-0.26528	-0.00011918	-0.11791	-5.2972E-05	-0.38319	-0.00017215	449.26119629365115	23.258	0.40858	23.258	22.992	23.401	0					16	9	2	0	0	0	0.4966	1	7021	7021		32.812	2.3088	1	110700			13223	3514	8561	8594	13419	13419					0.05557204617332445
GLGLCLPPGP	10	Unmodified	_GLGLCLPPGP_					0	0	0		ENST00000471717.1_1_7:99772169-99774834:-|nuORF	ENST00000471717.1_1_7:99772169-99774834:-|nuORF	ENST00000471717.1_1_7:99772169-99774834:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.25537109375	2	462.254588	922.494624	0.71944	0.00033256	1.1067	0.00051156	1.8261	0.00084412	462.2550371238048	15.526	0.71177	15.526	15.417	16.128	0					26	14	4	0	0	0	0.50739	1	4271	4271		44.531	5.5096	1	13336000			13224	9856	8562	8595	13420	13420					0.030276305137249437
GLGLEEAGPK	10	Unmodified	_GLGLEEAGPK_					0	0	0		ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6	ENSG00000196642|ENST00000311502|RABL6	ENSG00000196642|ENST00000311502|RABL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7661437988281	2	485.763832	969.513111	2.505	0.0012169	1.0148	0.00049297	3.5199	0.0017098	485.76463258302726	17.16	2.8142	17.16	16.859	19.673	0					138	57	5	0	0	0	0.39566	1	5245	5245		56.721	9.0637	1	2613700			13225	7388	8563	8596	13421	13421					0.027134636892810704
GLGLGWSRR	9	Unmodified	_GLGLGWSRR_					0	0	0			REV__ENST00000545748.5_1_12:52431545-52431905:+|nuORF	REV__ENST00000545748.5_1_12:52431545-52431905:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2849426269531	2	501.2856	1000.55665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.253	1	25.253	24.753	25.753	0								0	0	0	0.14517	1	8940	8940		60.972	6.1956	1		+		13226	20162	8564	8597	13422	13422					0.05639117977091246
GLGLNFLQGP	10	Unmodified	_GLGLNFLQGP_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2818603515625	2	508.282192	1014.54983	-0.46008	-0.00023385	-0.054249	-2.7574E-05	-0.51433	-0.00026142	508.2818393576404	38.185	0.22031	38.185	38.102	38.322	0					19	11	3	0	0	0	0.58896	1	12880	12880		35.618	0	1	94826		+	13227	619	8565	8598	13423	13423					0.043137603058426066
GLGPASAL	8	Unmodified	_GLGPASAL_					0	0	0			REV__ENSG00000091483|ENST00000366560|FH	REV__ENSG00000091483|ENST00000366560|FH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.1974792480469	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.836	1	50.836	50.336	51.336	0								0	0	0	1.7419	1	18250	18250		21.702	0	1		+		13228	13444	8566	8599	13424	13424					0.025824837431400738
GLGRATAPGF	10	Unmodified	_GLGRATAPGF_					0	0	0		ENST00000574946.5_1_17:6025924-6026050:+|nuORF	ENST00000574946.5_1_17:6025924-6026050:+|nuORF	ENST00000574946.5_1_17:6025924-6026050:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.76019287109375	2	473.758884	945.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.882	1	20.882	20.382	21.382	0								0	0	0	0.39244	1	6837	6837		32.812	0.85756	1				13229	10822	8567	8600	13425	13425					0.02828320474566226
GLGSGLKER	9	Unmodified	_GLGSGLKER_					0	0	0			REV__PACSIN1|p.V390Gfs*97|1|0.31|ENSG00000124507|chr6:34531731-34531731|T/-|frameshift_variant	REV__PACSIN1|p.V390Gfs*97|1|0.31|ENSG00000124507|chr6:34531731-34531731|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7630920410156	2	458.764166	915.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.326	1	27.326	26.826	27.826	0								0	0	0	0.2591	1	9533	9533		42.396	0	1		+		13230	21332	8568	8601	13426	13426					0.052643031289903774
GLGSRHRPVA	10	Unmodified	_GLGSRHRPVA_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.5368347167969	3	350.536946	1048.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.556	1	12.556	12.056	13.056	0								0	0	0	0.41967	1	2699	2699		24.519	2.8334	1				13231	3854;10156	8569	8602	13427	13427					0.06665905380077675
GLGSSRPSSAP	11	Unmodified	_GLGSSRPSSAP_					0	0	0		ENST00000578172.1_1_17:8370194-8370338:+|nuORF;ENST00000402554.7_1_17:8363409-8370338:+|nuORF;ENSG00000166579|ENST00000334527|NDEL1	ENST00000578172.1_1_17:8370194-8370338:+|nuORF	ENST00000578172.1_1_17:8370194-8370338:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2616882324219	2	508.261988	1014.50942	0.10115	5.141E-05	-1.8126	-0.0009213	-1.7115	-0.00086989	508.2608017767946	35.617	0.13106	35.617	35.544	35.675	0					8	5	2	0	0	0	0.67983	1	12700	12700		14.137	0	1	53463			13232	5916	8570	8603	13428	13428					0.0027479391542328813
GLGSVLAGLL	10	Unmodified	_GLGSVLAGLL_					0	0	0		ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3;ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENSG00000213901|ENST00000409878|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.28155517578125	2	450.28166	898.548768	-0.48072	-0.00021646	0.77612	0.00034947	0.2954	0.00013301	450.2817470293099	41.488	0.17322	41.488	41.364	41.537	0					14	8	2	0	0	0	0.38575	1	15733	15733		57.811	0	1	277780			13233	7799	8571	8604	13429	13429					0.09543545936958253
GLGTDDNTLI	10	Unmodified	_GLGTDDNTLI_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.75543212890625	2	509.756204	1017.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.382	1	38.382	37.882	38.882	0								0	0	0	0.2634	1	15057	15057		56.434	4.906	1				13234	7410	8572	8605	13430	13430					-0.010194478985567912
GLGTWKSEPG	10	Unmodified	_GLGTWKSEPG_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2630004882812	2	516.261456	1030.50836	-0.047624	-2.4587E-05	3.0889	0.0015947	3.0413	0.0015701	516.2627948809927	25.618	0.3054	25.618	25.429	25.734	0					14	10	2	0	0	0	0.536	1	7986	7986		41.427	0.64845	1	72337			13235	3039	8573	8606	13431	13431					-0.005674204534898308
GLGVGTSLL	9	Unmodified	_GLGVGTSLL_					0	0	0		ENSG00000164050|ENST00000296440|PLXNB1;nc|ENSG00000164050|O43157-2|PLXNB1;ENST00000485535.5_1_3:48454981-48455414:-|nuORF;ENST00000473996.1_1_3:48454981-48455344:-|nuORF	ENSG00000164050|ENST00000296440|PLXNB1;ENST00000473996.1_1_3:48454981-48455344:-|nuORF	ENSG00000164050|ENST00000296440|PLXNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.7462158203125	2	408.744911	815.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.915	1	38.915	38.415	39.415	0								0	0	0	0.27166	1	14799	14799		40.573	7.057	1				13236	5643;9886	8574	8607	13432	13432					0.060149974944692985
GLGVLWECQIR	11	Unmodified	_GLGVLWECQIR_					0	0	0			REV__ENST00000550614.5_2_14:105455660-105455831:+|nuORF	REV__ENST00000550614.5_2_14:105455660-105455831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.229736328125	3	425.228902	1272.66488	0.89619	0.00038109	1.0591	0.00045037	1.9553	0.00083146	425.22946613324143	11.509	0.12668	11.509	11.427	11.553	0					5	3	2	0	0	0	0.7098	1	2386	2386		23.378	6.2112	1	58781	+		13237	20196	8575	8608	13433	13433					0.03945121445326549
GLGVWFIK	8	Unmodified	_GLGVWFIK_					0	0	0		ENO4|p.R542W|1|0.3|ENSG00000188316|chr10:116879887-116879887|C/T|missense_variant	ENO4|p.R542W|1|0.3|ENSG00000188316|chr10:116879887-116879887|C/T|missense_variant	ENO4|p.R542W|1|0.3|ENSG00000188316|chr10:116879887-116879887|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2750549316406	2	460.273638	918.532724	2.5325	0.0011657	0.21201	9.7581E-05	2.7445	0.0012632	460.27376214401454	42.697	0.37482	42.697	42.608	42.983	0					13	11	2	0	0	0	0.8006	1	17099	17099		20.482	0	1	208630			13238	919	8576	8609	13434	13434					0.0701988449069404
GLGVWLVVQ	9	Unmodified	_GLGVWLVVQ_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7873840332031	2	485.789653	969.564752	-0.24608	-0.00011954	-4.2968	-0.0020874	-4.5429	-0.0022069	485.78704846119666	33.894	0.12949	33.894	33.807	33.936	0					5	3	2	0	0	0	0.27781	1	11957	11957		52.299	6.3472	1	60530	+		13239	15664	8577	8610	13435	13435					0.07875252173846548
GLGWVWAL	8	Unmodified	_GLGWVWAL_					0	0	0			REV__ENST00000292433.3_1_19:13265195-13265537:+|nuORF	REV__ENST00000292433.3_1_19:13265195-13265537:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2571105957031	2	451.250163	900.485774	-0.0061333	-2.7676E-06	1.9199	0.00086634	1.9137	0.00086357	451.25274436239977	26.486	0.51008	26.486	26.219	26.729	0					41	16	4	0	0	0	0.77013	1	7969	7969		24.504	0.30126	1	320940	+		13240	18164	8578	8611	13436	13436					0.0315502493956501
GLGYLVPS	8	Unmodified	_GLGYLVPS_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.2260437011719	2	403.226354	804.438155	0.56349	0.00022721	-0.84746	-0.00034172	-0.28397	-0.00011451	403.22593301251254	36.769	0.2158	36.769	36.664	36.88	0					7	4	2	0	0	0	0.72892	1	14334	14334		29.842	1.5873	1	142110			13241	7879	8579	8612	13437	13437					0.02811325948709964
GLHDVAIGE	9	Unmodified	_GLHDVAIGE_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.7349548339844	2	455.735074	909.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.199	1	27.199	26.699	27.699	0								0	0	0	0.31623	1	8869	8869		31.955	0	1		+		13242	14172	8580	8613	13438	13438					-0.0027537851628949284
GLHKPVYH	8	Unmodified	_GLHKPVYH_					0	0	0		MRPL13|p.N115Tfs*7|1|0.27|ENSG00000172172|chr8:120419901-120419901|T/-|frameshift_variant;MRPL13|p.L141Cfs*3|1|0.04|ENSG00000172172|chr8:120414084-120414085|-/CCTAC|frameshift_variant;ENSG00000172172|ENST00000306185|MRPL13	MRPL13|p.N115Tfs*7|1|0.27|ENSG00000172172|chr8:120419901-120419901|T/-|frameshift_variant	MRPL13|p.N115Tfs*7|1|0.27|ENSG00000172172|chr8:120419901-120419901|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	317.5113525390625	3	317.511738	949.513385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.851	1	18.851	18.351	19.351	0								0	0	0	1.7419	1	5723	5723		17.365	0.89182	1				13243	6350	8581	8614	13439	13439					0.03660928199792579
GLHLRKKD	8	Unmodified	_GLHLRKKD_					0	0	0			REV__ENST00000533774.5_1_11:22848847-22850842:-|nuORF	REV__ENST00000533774.5_1_11:22848847-22850842:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.8587341308594	3	322.866293	965.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.931	1	18.931	18.431	19.431	0								0	0	0	1.7419	1	5897	5897		29.15	0	1		+		13244	18496	8582	8615	13440	13440					0.09288288636878406
GLHNLNLLSAG	11	Unmodified	_GLHNLNLLSAG_					0	0	0			REV__TRAM1|p.Y211S|1|0.19|ENSG00000067167|chr8:70587115-70587115|T/G|missense_variant	REV__TRAM1|p.Y211S|1|0.19|ENSG00000067167|chr8:70587115-70587115|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.3121337890625	2	554.809105	1107.60366	3.5826	0.0019877	0.76989	0.00042714	4.3525	0.0024148	554.809368008732	43.453	0.33797	43.453	43.323	43.661	0					24	11	3	0	0	0	0.41029	1	17361	17361		41.427	0	1	350480	+		13245	22229	8583	8616	13441	13441					0.0541593273756007
GLHSAELQLS	10	Unmodified	_GLHSAELQLS_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.189453125	3	352.189101	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.231	1	15.231	14.731	15.731	0								0	0	0	0.4201	1	3371	3371		14.086	0	1				13246	5134;11594;23079	8584	8617	13442	13442					0.02084251092287559
GLIATTLAIA	10	Unmodified	_GLIATTLAIA_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.29443359375	2	472.294768	942.574983	0.61074	0.00028845	-0.83739	-0.0003955	-0.22665	-0.00010705	472.2943879838203	39.708	0.32206	39.708	39.513	39.835	0					13	7	2	0	0	0	0.56015	1	15676	15676		38.806	3.1879	1	233900			13247	5604	8585	8618	13443	13443					0.10139815108402672
GLIEKSSRPG	10	Unmodified	_GLIEKSSRPG_					0	0	0			REV__KIAA1217|p.D155Mfs*19|1|0.27|ENSG00000120549|chr10:24380973-24380973|G/-|frameshift_variant	REV__KIAA1217|p.D155Mfs*19|1|0.27|ENSG00000120549|chr10:24380973-24380973|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.303955078125	2	522.29583	1042.57711	0.084946	4.4367E-05	2.2943	0.0011983	2.3793	0.0012427	523.3014430319062	20.804	0.32782	20.804	20.642	20.97	0					15	7	3	0	0	0	0.39566	1	6474	6474		56.721	1.2168	1	273940	+		13248	14286	8586	8619	13444	13444					0.057522438462456194
GLIEVQKLLAD	11	Unmodified	_GLIEVQKLLAD_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.23980712890625	3	400.239573	1197.69689	-0.090327	-3.6152E-05	0.96713	0.00038708	0.8768	0.00035093	400.5742516837389	33.86	0.37923	33.86	33.555	33.934	0					23	15	3	0	0	0	0.71641	1	11017	11017		26.063	6.0329	1	64000	+		13249	14799	8587	8620	13445	13445					0.10594812400154296
GLIFALLAWA	10	Unmodified	_GLIFALLAWA_					0	0	0			REV__nc|ENSG00000146453|Q8NA58|PNLDC1	REV__nc|ENSG00000146453|Q8NA58|PNLDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8853454589844	3	358.883061	1073.62735	1.2855	0.00046133	2.7326	0.00098068	4.0181	0.001442	358.88402159427704	28.503	0.61648	28.503	28.392	29.009	0					23	12	2	0	0	0	0.6796	1	10324	10324		24.519	1.9395	1	542800	+		13250	15314	8588	8621	13446	13446					0.09348398242036637
GLIFGWIRL	9	Unmodified	_GLIFGWIRL_					0	0	0			REV__ENSG00000109182|ENST00000226432|CWH43	REV__ENSG00000109182|ENST00000226432|CWH43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.8851013183594	3	358.886805	1073.63859	-0.90884	-0.00032617	-3.2292	-0.0011589	-4.1381	-0.0014851	358.8858619953639	28.308	0.11894	28.308	28.234	28.353	0					7	4	2	0	0	0	0.37197	1	9114	9114		44.117	4.0586	1	64637	+		13251	13897	8589	8622	13447	13447					0.10471220336171427
GLIFVAGAPIG	11	Unmodified	_GLIFVAGAPIG_					0	0	0			REV__ENSG00000127418|ENST00000510644|FGFRL1	REV__ENSG00000127418|ENST00000510644|FGFRL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.8696594238281	3	338.870932	1013.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.168	1	15.168	14.668	15.668	0								0	0	0	0.41424	1	3345	3345		33.922	6.0394	1		+		13252	14487	8590	8623	13448	13448					0.08471521345336441
GLIGPSGV	8	Unmodified	_GLIGPSGV_					0	0	0			REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.20648193359375	2	350.205421	698.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.078	1	46.078	45.578	46.578	0								0	0	0	1.7419	1	18447	18447		39.021	9.18	1		+		13253	18854	8591	8624	13449	13449					0.035027702601951205
GLIGRRRF	8	Unmodified	_GLIGRRRF_					0	0	0		MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant;ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant	MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.8053894042969	2	487.80396	973.593367	2.5737	0.0012555	-0.30088	-0.00014677	2.2728	0.0011087	487.80381041859954	43.104	0.49621	43.104	42.972	43.468	0					43	16	5	0	0	0	0.73426	1	17379	17379		26.796	0	1	2560700			13254	4451	8592	8625	13450	13450					0.10551414593646768
GLIHGDFNEF	10	Unmodified	_GLIHGDFNEF_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2;nc|ENSG00000058729|Q9BVS4-2|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.7728881835938	2	574.772188	1147.52982	1.0296	0.00059177	-0.21084	-0.00012118	0.81873	0.00047058	574.7722268422181	39.711	0.23338	39.711	39.6	39.834	0					26	13	3	0	0	0	0.44469	1	12863	12863		51.335	8.9393	1	198390			13255	1307	8593	8626	13451	13451					-0.03804035424764152
GLIIVHSGAAL	11	Unmodified	_GLIIVHSGAAL_					0	0	0			REV__ENSG00000169188|ENST00000374987|APEX2	REV__ENSG00000169188|ENST00000374987|APEX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.8816223144531	3	350.88172	1049.62333	0.16673	5.8504E-05	-1.0053	-0.00035274	-0.83856	-0.00029423	350.8815105036605	14.12	0.052551	14.12	14.086	14.139	0					4	2	2	0	0	0	0.64626	1	2864	2864		32.751	2.4328	1	31314	+		13256	16298	8594	8627	13452	13452					0.10050308748327552
GLILNPPPQV	10	Unmodified	_GLILNPPPQV_					0	0	0		ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.8780212402344	3	349.878087	1046.61243	0.49726	0.00017398	-0.64289	-0.00022493	-0.14564	-5.0955E-05	349.87792030589395	32.299	0.61884	32.299	32.167	32.786	0					38	15	4	0	0	0	0.57532	1	11812	11812		49.536	0	1	11608000			13257	7828	8595	8628	13453	13453					0.09098906374038052
GLIRTPYGCC	10	Unmodified	_GLIRTPYGCC_					0	0	0			REV__PIEZO1|p.R2082C|1|0.39|ENSG00000103335|chr16:88719881-88719881|G/A|missense_variant	REV__PIEZO1|p.R2082C|1|0.39|ENSG00000103335|chr16:88719881-88719881|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7601318359375	2	541.759712	1081.50487	0.31444	0.00017035	-0.16579	-8.9816E-05	0.14865	8.0535E-05	541.7598236565436	25.28	0.36912	25.28	25.073	25.442	0					17	7	4	0	0	0	0.65213	1	8992	8992		27.882	0	1	233630	+		13258	21371	8596	8629	13454	13454					-0.032621298233607376
GLIVGPLSL	9	Unmodified	_GLIVGPLSL_					0	0	0			REV__ENSG00000188886|ENST00000342380|ASTL	REV__ENSG00000188886|ENST00000342380|ASTL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.7799377441406	2	434.778754	867.542954	2.6262	0.0011418	0.14671	6.3785E-05	2.7729	0.0012056	434.77873869676677	25.136	1.1049	25.136	24.929	26.034	0					48	20	3	0	0	0	0.41354	1	8773	8773		40.573	3.5441	1	2876400	+		13259	17200	8597	8630	13455	13455					0.10388447425293634
GLIVSIVKQ	9	Unmodified	_GLIVSIVKQ_					0	0	0			REV__ENSG00000179256|ENST00000316048|SMCO3	REV__ENSG00000179256|ENST00000316048|SMCO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.810546875	2	478.810585	955.606617	-1.4395	-0.00068923	0.76685	0.00036718	-0.67262	-0.00032206	478.8110144113465	34.851	0.092693	34.851	34.785	34.878	0					7	4	2	0	0	0	0.30951	1	11775	11775		49.442	4.4193	1	77355	+		13260	16771	8598	8631	13456	13456					0.12703807862385474
GLIVYGKQLG	10	Unmodified	_GLIVYGKQLG_					0	0	0			REV__ENST00000562945.2_1_16:34428948-34429212:-|nuORF	REV__ENST00000562945.2_1_16:34428948-34429212:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.8780212402344	3	349.878087	1046.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.216	1	32.216	31.716	32.716	0								0	0	0	0.31878	1	12124	12124		51.193	1.6567	1		+		13261	20310	8599	8632	13457	13457					0.09098906374038052
GLKAGALA	8	Unmodified	_GLKAGALA_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.7212829589844	2	350.721239	699.427924	0.49605	0.00017397	-0.64767	-0.00022715	-0.15162	-5.3176E-05	350.72100646067673	34.652	0.35718	34.652	34.521	34.878	0					19	9	3	0	0	0	0.79176	1	12913	12913		21.702	0	1	457560			13262	2402	8600	8633	13458	13458					0.06618763014125761
GLKAWIALSV	10	Unmodified	_GLKAWIALSV_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.2168884277344	3	353.218332	1056.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.722	1	21.722	21.222	22.222	0								0	0	0	0.38879	1	6347	6347		33.922	1.1092	1		+		13263	13970	8601	8634	13459	13459					0.1071149675367451
GLKAYTGEK	9	Unmodified	_GLKAYTGEK_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7656555175781	2	483.766374	965.518196	0.022941	1.1098E-05	-0.60708	-0.00029368	-0.58414	-0.00028259	483.7659214561018	29.318	0.13284	29.318	29.236	29.369	0					8	5	2	0	0	0	0.44593	1	9247	9247		37.812	3.639	1	48225	+		13264	17830	8602	8635	13460	13460					0.03405767551896588
GLKIGKDQL	9	Unmodified	_GLKIGKDQL_					0	0	0			REV__tr|U7SH91|U7SH91_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02371PE=4SV=1	REV__tr|U7SH91|U7SH91_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02371PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.5342102050781	3	324.53432	970.581131	-0.70274	-0.00022806	0.55464	0.00018	-0.14811	-4.8066E-05	324.5344670930582	19.504	0.15305	19.504	19.402	19.555	0					11	4	3	0	0	0	0.59802	1	5288	5288		22.58	0	1	693210	+		13265	21704	8603	8636	13461	13461					0.09466333339935318
GLKLRLLKN	9	Unmodified	_GLKLRLLKN_					0	0	0		ENST00000393667.7_1_3:121416548-121416584:-|nuORF	ENST00000393667.7_1_3:121416548-121416584:-|nuORF	ENST00000393667.7_1_3:121416548-121416584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.55718994140625	3	352.241359	1053.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.686	1	10.686	10.186	11.186	0								0	0	0	0.38667	1	2076	2076		14.865	0.72775	1				13266	9161	8604	8637	13462	13462					0.177545807732713
GLKNPVPI	8	Unmodified	_GLKNPVPI_					0	0	0			REV__GTSE1|p.L312P|1|0.21|ENSG00000075218|chr22:46313897-46313897|T/C|missense_variant	REV__GTSE1|p.L312P|1|0.21|ENSG00000075218|chr22:46313897-46313897|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.2627868652344	2	419.263271	836.511988	1.0545	0.00044212	-1.5296	-0.00064131	-0.47509	-0.00019919	419.2626939412425	43.401	0.14634	43.401	43.329	43.475	0					6	5	2	0	0	0	0.8006	1	17370	17370		20.482	5.8177	1	32824	+		13267	13224	8605	8638	13463	13463					0.08719294111040199
GLKRDLRWK	9	Unmodified	_GLKRDLRWK_					0	0	0			REV__ENST00000525557.5_2_14:92959235-92959969:+|nuORF	REV__ENST00000525557.5_2_14:92959235-92959969:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.239501953125	3	391.24013	1170.69856	-2.2026	-0.00086173	1.0263	0.00040154	-1.1762	-0.00046019	391.24048950828586	27.205	0.21486	27.205	27.118	27.333	0					10	5	3	0	0	0	0.56424	1	8859	8859		25.574	25.574	1	351350	+		13268	15060	8606	8639	13464	13464					0.12003910999374057
GLKTKYEQ	8	Unmodified	_GLKTKYEQ_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.8466796875	3	322.846675	965.518196	0.53519	0.00017279	-0.57803	-0.00018662	-0.042839	-1.383E-05	322.84647351126324	15.198	0.18156	15.198	15.101	15.283	0					10	4	3	0	0	0	0.68754	1	3880	3880		37.159	9.0776	1	1163200			13269	8103	8607	8640	13465	13465					0.03405767551896588
GLKVPTTITL	10	Unmodified	_GLKVPTTITL_					0	0	0		ENST00000484020.1_1_2:97261350-97267559:-|nuORF;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3	ENST00000484020.1_1_2:97261350-97267559:-|nuORF	ENST00000484020.1_1_2:97261350-97267559:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.82861328125	2	521.828975	1041.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.129	1	32.129	31.629	32.629	0								0	0	0	0.4162	1	10703	10703		25.574	1.0549	1				13270	2875	8608	8641	13466	13466					0.12424059688282796
GLLAAAAAGL	10	Unmodified	_GLLAAAAAGL_					0	0	0		ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.252685546875	2	414.252903	826.491253	-0.067796	-2.8085E-05	-0.30031	-0.0001244	-0.3681	-0.00015249	414.2527176968165	30.086	0.76772	30.086	29.899	30.667	0					40	19	3	0	0	0	0.661	1	10376	10376		26.796	1.222	1	561970			13271	6726	8609	8642	13467	13467					0.07106703731358266
GLLDESFLR	9	Unmodified	_GLLDESFLR_					0	0	0		UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant	UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2835083007812	2	525.284931	1048.55531	0.154	8.0893E-05	-3.3635	-0.0017668	-3.2095	-0.0016859	525.2834073509199	13.221	0.15317	13.221	13.129	13.282	0					7	3	3	0	0	0	0.46194	1	3181	3181		29.15	4.6304	1	380230			13272	3683	8610	8643	13468	13468					0.032974390976505674
GLLDFMKK	8	Oxidation (M)	_GLLDFM(Oxidation (M))KK_		GLLDFM(1)KK		GLLDFM(66)KK	0	0	1		tr|U7SYX3|U7SYX3_FUSNURibosomal-protein-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00792PE=4SV=1	tr|U7SYX3|U7SYX3_FUSNURibosomal-protein-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00792PE=4SV=1	tr|U7SYX3|U7SYX3_FUSNURibosomal-protein-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00792PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2694091796875	2	484.267696	966.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.04	1	14.04	13.54	14.54	0								0	0	0	1.7419	1	3555	3555		65.803	7.5733	1				13273	22883	8611	8644	13469	13469		823			0.036238996852148375
GLLDFTHLT	9	Unmodified	_GLLDFTHLT_					0	0	0			REV__ENST00000539344.1_1_14:23067215-23072668:+|nuORF	REV__ENST00000539344.1_1_14:23067215-23072668:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7738952636719	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.572	1	35.572	35.072	36.072	0								0	0	0	0.32356	1	12681	12681		30.504	0.18592	1		+		13274	13554	8612	8645	13470	13470					0.02670054068948957
GLLDTVAKR	9	Unmodified	_GLLDTVAKR_					0	0	0			REV__WASL|p.R141Q|2|0.3|ENSG00000106299|chr7:123706291-123706291|C/T|missense_variant	REV__WASL|p.R141Q|2|0.3|ENSG00000106299|chr7:123706291-123706291|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.79534912109375	2	486.795466	971.57638	0.41693	0.00020296	-0.70036	-0.00034093	-0.28343	-0.00013797	486.7951352676925	15.763	0.25055	15.763	15.657	15.907	0					25	10	4	0	0	0	0.42902	1	3573	3573		39.253	0.49923	1	2123000	+		13275	13819	8613	8646	13471	13471					0.08945449197187827
GLLFVQIAKS	10	Unmodified	_GLLFVQIAKS_					0	0	0			REV__LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant	REV__LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.2216491699219	3	359.221853	1074.64373	1.43	0.00051367	-1.9688	-0.00070723	-0.53882	-0.00019356	359.22116731076	35.755	0.25372	35.755	35.605	35.858	0					21	7	3	0	0	0	0.61887	1	13854	13854		22.58	0	1	294440	+		13276	14594	8614	8647	13472	13472					0.10939479408125408
GLLGAGCDM	9	Carbamidomethyl (C),Oxidation (M)	_GLLGAGC(Carbamidomethyl (C))DM(Oxidation (M))_	GLLGAGC(1)DM	GLLGAGCDM(1)	GLLGAGC(45)DM	GLLGAGCDM(45)	0	1	1			REV__MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	REV__MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.1935729980469	2	455.193871	908.373188	-0.58062	-0.0002643	-0.21854	-9.9477E-05	-0.79916	-0.00036377	455.1938652060333	26.88	0.26471	26.88	26.745	27.01	0					14	6	3	0	0	0	0.36711	1	9319	9319		44.531	8.9128	1	422160	+		13277	16769	8615	8648	13473	13473	594	640			-0.08466359911096788
GLLGATAIIK	10	Unmodified	_GLLGATAIIK_					0	0	0			REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.81060791015625	2	478.810585	955.606617	0.021163	1.0133E-05	0.2532	0.00012124	0.27436	0.00013137	478.8106404221772	34.795	0.22369	34.795	34.727	34.951	0					19	10	3	0	0	0	0.17315	1	11386	11386		82.75	13.904	1	218770	+		13278	21901	8616	8649	13474	13474					0.12703807862374106
GLLGATAIIK	10	Unmodified	_GLLGATAIIK_					0	0	0			REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.8109436035156	2	478.810585	955.606617	-0.11572	-5.5407E-05	0.13431	6.4309E-05	0.018593	8.9024E-06	478.81059923779713	35.069	0.23166	35.069	34.97	35.202	0					12	6	3	0	0	0	0.11308	1	13561	13561		93.143	9.4962	1	377500	+		13279	21901	8616	8649	13475	13475					0.12703807862374106
GLLGATAIIK	10	Unmodified	_GLLGATAIIK_					0	0	0			REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.8103332519531	2	478.810585	955.606617	-0.31881	-0.00015265	0.34486	0.00016512	0.026046	1.2471E-05	478.8107786832792	34.834	0.2473	34.834	34.75	34.997	0					19	9	3	0	0	0	0.17315	1	12364	12364		82.75	12.352	1	124810	+		13280	21901	8616	8649	13476	13476					0.12703807862374106
GLLGATAIIK	10	Unmodified	_GLLGATAIIK_					0	0	0			REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.8103942871094	2	478.810585	955.606617	-0.65932	-0.00031569	0.20856	9.986E-05	-0.45076	-0.00021583	478.8106504538654	35.039	0.4157	35.039	34.88	35.296	0					18	8	4	0	0	0	0.065649	1	13475	13475		104.06	16.36	1	1915000	+		13281	21901	8616	8649	13477	13477					0.12703807862374106
GLLHEVVSL	9	Unmodified	_GLLHEVVSL_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.8587341308594	3	322.858804	965.554582	0.28862	9.3182E-05	-0.42407	-0.00013691	-0.13545	-4.3732E-05	322.8586162353422	18.652	0.095865	18.652	18.589	18.685	0					8	3	3	0	0	0	0.55282	1	4665	4665		26.693	11.828	1	257510			13282	7780	8617	8650	13478	13478					0.07042644448631563
GLLHIEGVGL	10	Unmodified	_GLLHIEGVGL_					0	0	0			REV__ENST00000573965.1_3_16:2933286-2946490:+|nuORF	REV__ENST00000573965.1_3_16:2933286-2946490:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53399658203125	3	336.53432	1006.58113	-0.7028	-0.00023652	0.54473	0.00018332	-0.15807	-5.3196E-05	336.53468355038433	18.554	1.3845	18.554	18.457	19.842	0					108	44	6	0	0	0	0.72821	1	5025	5025		22.58	5.8623	1	70070000	+		13283	20399	8618	8651	13479	13479					0.07810333339955378
GLLHSPAL	8	Unmodified	_GLLHSPAL_					0	0	0			REV__ENST00000485332.7_1_X:221590-221677:-|nuORF	REV__ENST00000485332.7_1_X:221590-221677:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.2398681640625	2	404.239796	806.465038	-1.3616	-0.00055043	2.002	0.00080927	0.64031	0.00025884	404.2406305323625	31.35	0.15662	31.35	31.275	31.432	0					11	6	2	0	0	0	0.66238	1	10386	10386		39.021	0	1	56542	+		13284	19651	8619	8652	13480	13480					0.05406434559904483
GLLIVNTK	8	Unmodified	_GLLIVNTK_					0	0	0			REV__ENSG00000141698|ENST00000435506|NT5C3B	REV__ENSG00000141698|ENST00000435506|NT5C3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2763366699219	2	429.276378	856.538203	-0.2618	-0.00011238	-0.17003	-7.299E-05	-0.43183	-0.00018537	429.2764313784005	27.132	0.16332	27.132	27.014	27.177	0					7	4	2	0	0	0	0.28158	1	8833	8833		88.643	0	1	75847	+		13285	15130	8620	8653	13481	13481					0.10419563282505351
GLLLIMALM	9	Unmodified	_GLLLIMALM_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7944641113281	2	487.792492	973.570431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.283	1	22.283	21.783	22.783	0								0	0	0	0.21213	1	7214	7214		49.211	5.094	1				13286	7111	8621	8654	13482	13482					0.0825889136965543
GLLLYLVPA	9	Unmodified	_GLLLYLVPA_					0	0	0		ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000272391|A8CG34|POM121C	ENSG00000196313|ENST00000434423|POM121	ENSG00000196313|ENST00000434423|POM121	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.302978515625	2	479.802229	957.589904	0.028255	1.3557E-05	-1.8156	-0.00087112	-1.7873	-0.00085757	479.8015803238912	35.109	0.35986	35.109	35.049	35.408	0					24	17	2	0	0	0	0.43174	1	11542	11542		39.021	1.21	1	139930			13287	7348	8622	8655	13483	13483					0.10941306976428677
GLLPPREGAP	10	Unmodified	_GLLPPREGAP_					0	0	0			REV__ENSG00000078579|ENST00000180166|FGF20	REV__ENSG00000078579|ENST00000180166|FGF20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1936950683594	3	336.194186	1005.56073	-0.70263	-0.00023622	0.62684	0.00021074	-0.07579	-2.548E-05	336.19434113090085	17.358	0.59565	17.358	17.235	17.831	0					36	19	2	0	0	0	0.661	1	4472	4472		24.519	7.8018	1	298380	+		13288	13272	8623	8656	13484	13484					0.05817162680136789
GLLQGLVLAQ	10	Unmodified	_GLLQGLVLAQ_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-4|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-4|SH3TC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	337.87835693359375	3	337.878087	1010.61243	0.37199	0.00012569	-0.57629	-0.00019472	-0.2043	-6.9027E-05	337.87807091932876	22.873	0.1465	22.873	22.781	22.928	0					6	4	2	0	0	0	0.39827	1	6534	6534		56.434	8.4743	1	86839	+		13289	16306	8624	8657	13485	13485					0.10754906374040729
GLLQKNKNK	9	Unmodified	_GLLQKNKNK_					0	0	0			REV__nc|ENSG00000137965|Q8TCB0-2|IFI44	REV__nc|ENSG00000137965|Q8TCB0-2|IFI44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.822021484375	2	521.822015	1041.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.311	1	16.311	15.811	16.811	0								0	0	0	0.18645	1	3840	3840		45.952	3.5558	1		+		13290	21036	8625	8658	13486	13486					0.11032826979840138
GLLREGSSHCK	11	Unmodified	_GLLREGSSHCK_					0	0	0			REV__ENST00000468626.2_1_1:235993700-235996928:-|nuORF	REV__ENST00000468626.2_1_1:235993700-235996928:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.3052978515625	2	593.803497	1185.59244	-0.54563	-0.000324	0.52923	0.00031426	-0.016401	-9.7392E-06	593.8037514915849	36.091	0.258	36.091	35.987	36.245	0					29	11	4	0	0	0	0.51875	1	12201	12201		42.864	0	1	492020	+		13291	19443	8626	8659	13487	13487					0.007067873717915063
GLLRGFRR	8	Unmodified	_GLLRGFRR_					0	0	0		ENST00000583655.5_1_17:73127559-73127802:-|nuORF;ENST00000579023.5_1_17:73127274-73127802:-|nuORF;nc|ENSG00000125458|Q8TCD5-2|NT5C;ENSG00000125458|ENST00000245552|NT5C	ENST00000583655.5_1_17:73127559-73127802:-|nuORF	ENST00000583655.5_1_17:73127559-73127802:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.80499267578125	2	487.80396	973.593367	2.5737	0.0012555	-0.30088	-0.00014677	2.2728	0.0011087	487.80381041859954	43.104	0.49621	43.104	42.972	43.468	0					43	16	5	0	0	0	0.44433	1	17227	17227		65.897	8.4448	1	2560700			13292	3417	8627	8660	13488	13488					0.10551414593658137
GLLRTYTVY	9	Unmodified	_GLLRTYTVY_					0	0	0			REV__ENSG00000077454|ENST00000310300|LRCH4	REV__ENSG00000077454|ENST00000310300|LRCH4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.302978515625	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.785	1	46.785	46.285	47.285	0								0	0	0	0.28164	1	18709	18709		38.806	1.647	1		+		13293	13263	8628	8661	13489	13489					0.05278315994382865
GLLRVRYM	8	Unmodified	_GLLRVRYM_					0	0	0			REV__ENST00000481125.5_1_6:27220693-27222867:+|nuORF	REV__ENST00000481125.5_1_6:27220693-27222867:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.881	1	43.881	43.381	44.381	0								0	0	0	1.7419	1	17579	17579		16.473	0	1		+		13294	19597	8629	8662	13490	13490					0.07158116907589829
GLLRVRYM	8	Unmodified	_GLLRVRYM_					0	0	0			REV__ENST00000481125.5_1_6:27220693-27222867:+|nuORF	REV__ENST00000481125.5_1_6:27220693-27222867:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53448486328125	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.738	1	51.738	51.238	52.238	0								0	0	0	1.7419	1	20197	20197		17.365	0	1		+		13295	19597	8629	8662	13491	13491					0.07158116907589829
GLLSDRKKV	9	Unmodified	_GLLSDRKKV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3182373046875	2	508.316566	1014.61858	2.9719	0.0015107	0.7692	0.000391	3.7411	0.0019017	508.3169551956883	34.077	1.0918	34.077	33.973	35.065	0					52	22	3	0	0	0	0.063823	1	13011	13011		85.359	0	1	8595800			13296	6043	8630	8663	13492	13492					0.1118542460557137
GLLSVCVKGN	10	Unmodified	_GLLSVCVKGN_					0	0	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7764587402344	2	495.276052	988.537551	0.091424	4.528E-05	-1.0507	-0.00052038	-0.95926	-0.0004751	495.2757432176154	30.175	0.38114	30.175	29.971	30.352	0					20	9	3	0	0	0	0.58896	1	10205	10205		35.618	1.4457	1	331980	+		13297	16638	8631	8664	13493	13493					0.04282400571173639
GLLSVGLPGL	10	Unmodified	_GLLSVGLPGL_					0	0	0		ENST00000379671.7_1_5:111091479-111093265:-|nuORF;ENST00000455559.6_1_5:111091479-111093657:-|nuORF;ENST00000508161.5_1_5:111091482-111093647:-|nuORF;ENST00000257435.11_1_5:111091482-111092910:-|nuORF	ENST00000379671.7_1_5:111091479-111093265:-|nuORF	ENST00000379671.7_1_5:111091479-111093265:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2891845703125	2	463.289485	924.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.328	1	29.328	28.828	29.828	0								0	0	0	0.33119	1	9851	9851		45.952	0	1				13298	8270	8632	8665	13494	13494					0.09911832453997249
GLLVALVGAQ	10	Unmodified	_GLLVALVGAQ_					0	0	0		ENSG00000165215|ENST00000395145|CLDN3	ENSG00000165215|ENST00000395145|CLDN3	ENSG00000165215|ENST00000395145|CLDN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7948913574219	2	470.794935	939.575317	0.60209	0.00028346	-1.2437	-0.00058553	-0.64161	-0.00030207	470.79438785314017	35.575	0.47551	35.575	35.352	35.828	0					24	13	2	0	0	0	0.22138	1	13802	13802		76.847	16.553	1	667510			13299	5775	8633	8666	13495	13495					0.10311234828282068
GLLVLPLRPH	10	Unmodified	_GLLVLPLRPH_					0	0	0			REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF	REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.24005126953125	3	372.241359	1113.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.094	1	13.094	12.594	13.594	0								0	0	0	0.4201	1	3107	3107		22.58	4.3176	1		+		13300	18633	8634	8667	13496	13496					0.14994580773304733
GLLWACHLTY	10	Unmodified	_GLLWACHLTY_					0	0	0		ENST00000403313.5_1_22:36877237-36877378:-|nuORF	ENST00000403313.5_1_22:36877237-36877378:-|nuORF	ENST00000403313.5_1_22:36877237-36877378:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7941284179688	2	588.797152	1175.57975	1.3618	0.00080183	-4.0538	-0.0023869	-2.692	-0.001585	588.7948996238387	44.207	0.19583	44.207	44.077	44.273	0					11	8	2	0	0	0	0.4943	1	17713	17713		45.952	18.07	1	81087			13301	9263	8635	8668	13497	13497					-0.0010162402047626529
GLLYIAKKN	9	Unmodified	_GLLYIAKKN_					0	0	0		ENSG00000066185|ENST00000372565|ZMYND12	ENSG00000066185|ENST00000372565|ZMYND12	ENSG00000066185|ENST00000372565|ZMYND12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.54644775390625	3	340.546449	1018.61752	0.67097	0.0002285	-0.88156	-0.00030021	-0.2106	-7.1719E-05	340.54625194734774	33.185	0.16339	33.185	33.147	33.31	0					6	4	2	0	0	0	0.61124	1	12262	12262		20.947	6.0821	1	181420			13302	1388	8636	8669	13498	13498					0.10895210236662933
GLMKIYVLQ	9	Oxidation (M)	_GLM(Oxidation (M))KIYVLQ_		GLM(1)KIYVLQ		GLM(44)KIYVLQ	0	0	1		ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.810302734375	2	540.809728	1079.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.981	1	36.981	36.481	37.481	0								0	0	0	0.24724	1	12515	12515		44.117	6.9577	1				13303	6930	8637	8670	13499	13499		282			0.06828430782093164
GLMVILLVL	9	Unmodified	_GLMVILLVL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|267|2|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|267|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.2168884277344	3	324.217163	969.629661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.024	1	18.024	17.524	18.524	0								0	0	0	0.38404	1	5313	5313		15.642	1.5047	1		+		13304	12471	8638	8671	13500	13500					0.14363110655483524
GLNECLHNNG	10	Unmodified	_GLNECLHNNG_					0	0	0		nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7387084960938	2	535.737822	1069.46109	0.11742	6.2908E-05	0.19031	0.00010195	0.30773	0.00016486	535.7383267221519	17.969	0.13166	17.969	17.895	18.026	0					5	3	2	0	0	0	0.58189	1	4628	4628		36.447	5.9431	1	57730			13305	5203	8639	8672	13501	13501					-0.07086022996122665
GLNEINHI	8	Unmodified	_GLNEINHI_					0	0	0		ENSG00000279000|ENST00000641238|OR10A6	ENSG00000279000|ENST00000641238|OR10A6	ENSG00000279000|ENST00000641238|OR10A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2427673339844	2	455.243067	908.47158	0.72686	0.0003309	-1.3583	-0.00061838	-0.63148	-0.00028748	455.2423967177843	27.435	0.22038	27.435	27.335	27.556	0					8	5	2	0	0	0	0.63077	1	9610	9610		44.117	3.5442	1	183730			13306	8127	8640	8673	13502	13502					0.013683277206155253
GLNGLQLAVL	10	Unmodified	_GLNGLQLAVL_					0	0	0		nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.30560302734375	2	499.305667	996.596781	0.67418	0.00033662	-0.90852	-0.00045363	-0.23433	-0.000117	499.30520818344246	30.746	0.61454	30.746	30.566	31.181	0					38	14	3	0	0	0	0.59277	1	11071	11071		23.042	0	1	2500600			13307	3382	8641	8674	13503	13503					0.09834619856997051
GLNYFVQL	8	Unmodified	_GLNYFVQL_					0	0	0			REV__COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	REV__COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2595520019531	2	477.258185	952.501818	2.2376	0.0010679	0.99508	0.00047491	3.2327	0.0015428	477.2586523456438	33.084	0.54196	33.084	32.941	33.483	0					29	11	4	0	0	0	0.32408	1	12522	12522		79.939	22.128	1	9768700	+		13308	12542	8642	8675	13504	13504					0.023666863858238685
GLPGGLLPWP	10	Unmodified	_GLPGGLLPWP_					0	0	0			REV__ENST00000223095.4_1_7:100780802-100780919:+|nuORF	REV__ENST00000223095.4_1_7:100780802-100780919:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.19427490234375	3	336.195527	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.306	1	17.306	16.806	17.806	0								0	0	0	0.32041	1	4102	4102		47.657	1.7054	1		+		13309	17895	8643	8676	13505	13505					0.0621925217384387
GLPGPPYFI	9	Unmodified	_GLPGPPYFI_					0	0	0			REV__ENST00000488265.1_1_7:149545263-149547465:+|nuORF	REV__ENST00000488265.1_1_7:149545263-149547465:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7615661621094	2	480.763104	959.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.129	1	24.129	23.629	24.629	0								0	0	0	0.38735	1	7342	7342		14.664	1.7049	1		+		13310	13825	8644	8677	13506	13506					0.030278743911935635
GLPHSSPW	8	Unmodified	_GLPHSSPW_					0	0	0		nc|ENSG00000280109|Q8WY50|PLAC4	nc|ENSG00000280109|Q8WY50|PLAC4	nc|ENSG00000280109|Q8WY50|PLAC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7208251953125	2	440.719227	879.423902	3.1384	0.0013832	0.90906	0.00040064	4.0475	0.0017838	440.7195617145791	28.233	0.37338	28.233	28.022	28.396	0					23	13	2	0	0	0	0.7914	1	9032	9032		14.664	0	1	113440			13311	11811	8645	8678	13507	13507					-0.020633264795719697
GLPLLAPSR	9	Unmodified	_GLPLLAPSR_					0	0	0			REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2870788574219	2	462.287277	922.560001	-0.79696	-0.00036843	0.30661	0.00014174	-0.49035	-0.00022668	462.28738053282694	31.794	0.33647	31.794	31.628	31.965	0					27	13	3	0	0	0	0.45358	1	10547	10547		37.159	2.9866	1	215280	+		13312	18425	8646	8679	13508	13508					0.09562368031083679
GLPLRTGPI	9	Unmodified	_GLPLRTGPI_					0	0	0			REV__ENST00000555567.5_1_14:75421952-75422225:-|nuORF	REV__ENST00000555567.5_1_14:75421952-75422225:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.28692626953125	2	462.287277	922.560001	-0.72008	-0.00033289	0.07905	3.6544E-05	-0.64103	-0.00029634	462.28726637012176	32.059	0.4537	32.059	31.849	32.303	0					26	11	3	0	0	0	0.22377	1	11701	11701		58.782	3.2778	1	548320	+		13313	20244	8647	8680	13509	13509					0.09562368031083679
GLPLTDGVCV	10	Unmodified	_GLPLTDGVCV_					0	0	0			REV__ENST00000419474.4_1_14:24000754-24000877:-|nuORF	REV__ENST00000419474.4_1_14:24000754-24000877:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2544250488281	2	487.254785	972.495018	-0.23126	-0.00011268	-0.394	-0.00019198	-0.62526	-0.00030466	487.25461745879505	27.285	0.21601	27.285	27.129	27.345	0					8	5	2	0	0	0	0.69166	1	8904	8904		23.042	3.0457	1	60460	+		13314	19061	8648	8681	13510	13510					0.007670054429240736
GLPPSMLTLM	10	Unmodified	_GLPPSMLTLM_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.8585510253906	3	353.857418	1058.55042	1.4434	0.00051075	1.6192	0.00057298	3.0626	0.0010837	353.85795630461035	17.845	0.22008	17.845	17.684	17.904	0					11	4	3	0	0	0	0.63224	1	5386	5386		30.318	5.7985	1	607740	+		13315	17388	8649	8682	13511	13511					0.02349095639033294
GLPQAPGPWAR	11	Unmodified	_GLPQAPGPWAR_					0	0	0			REV__ENST00000519935.1_1_7:27209203-27211037:+|nuORF	REV__ENST00000519935.1_1_7:27209203-27211037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.311767578125	2	575.311815	1148.60908	0.055075	3.1685E-05	-0.36962	-0.00021264	-0.31454	-0.00018096	575.3114755092854	30.004	0.15307	30.004	29.927	30.08	0					8	5	2	0	0	0	0.64562	1	9831	9831		32.812	7.6864	1	70057	+		13316	19945	8650	8683	13512	13512					0.040716563200248856
GLPSGEHL	8	Unmodified	_GLPSGEHL_					0	0	0			REV__ENSG00000155858|ENST00000286307|LSM11	REV__ENSG00000155858|ENST00000286307|LSM11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.211181640625	2	405.211235	808.407917	-0.57364	-0.00023244	0.48306	0.00019574	-0.090575	-3.6702E-05	405.2114130926684	24.986	0.45897	24.986	24.771	25.23	0					22	9	3	0	0	0	0.65276	1	8720	8720		40.573	5.3719	1	480330	+		13317	15614	8651	8684	13513	13513					-0.003950327164830014
GLPSGSCRDKK	11	Carbamidomethyl (C)	_GLPSGSC(Carbamidomethyl (C))RDKK_	GLPSGSC(1)RDKK		GLPSGSC(46)RDKK		0	1	0		ENSG00000174099|ENST00000308259|MSRB3	ENSG00000174099|ENST00000308259|MSRB3	ENSG00000174099|ENST00000308259|MSRB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.2082824707031	3	402.208278	1203.60301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.862	1	13.862	13.362	14.362	0								0	0	0	0.34471	1	3471	3471		45.908	16.357	1				13318	6470	8652	8685	13514	13514	274				0.00934770026174192
GLPSYNIN	8	Unmodified	_GLPSYNIN_					0	0	0			REV__MORC4|p.I318Nfs*19|1|0.07|ENSG00000133131|chrX:106978183-106978184|-/GTAGTTAATAT|frameshift_variant	REV__MORC4|p.I318Nfs*19|1|0.07|ENSG00000133131|chrX:106978183-106978184|-/GTAGTTAATAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2239685058594	2	439.224342	876.434132	-0.37062	-0.00016278	-0.1861	-8.1739E-05	-0.55672	-0.00024452	439.22423467615056	20.842	0.23874	20.842	20.731	20.97	0					16	5	4	0	0	0	0.49216	1	6517	6517		60.972	0.67798	1	4360700	+		13319	20890	8653	8686	13515	13515					-0.009027635450138405
GLPTQEANGQP	11	Unmodified	_GLPTQEANGQP_					0	0	0		ENSG00000164620|ENST00000297164|RELL2	ENSG00000164620|ENST00000297164|RELL2	ENSG00000164620|ENST00000297164|RELL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.2749633789062	2	556.272552	1110.53055	0.56923	0.00031665	3.1972	0.0017785	3.7664	0.0020951	556.2745921684907	12.268	0.11813	12.268	12.207	12.326	0					10	4	3	0	0	0	0.32196	1	2549	2549		51.193	0	1	593180			13320	5711	8654	8687	13516	13516					-0.020292407757324327
GLPVESDNW	9	Unmodified	_GLPVESDNW_					0	0	0			REV__ENST00000488051.1_1_2:220246364-220246484:-|nuORF	REV__ENST00000488051.1_1_2:220246364-220246484:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7370910644531	2	508.737814	1015.46108	-0.021383	-1.0878E-05	-2.8144	-0.0014318	-2.8358	-0.0014427	508.73694466108975	34.902	0.55109	34.902	34.641	35.192	0					28	14	4	0	0	0	0.53083	1	13052	13052		29.15	0.89528	1	310680	+		13321	19686	8655	8688	13517	13517					-0.046036997244755185
GLPVNISDAYQ	11	Unmodified	_GLPVNISDAYQ_					0	0	0		ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-4|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A	ENST00000497003.5_1_2:178552959-178791632:-|nuORF	ENST00000497003.5_1_2:178552959-178791632:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.8681945800781	3	392.868027	1175.58225	0.8863	0.0003482	-0.20017	-7.864E-05	0.68613	0.00026956	392.867982264999	17.108	1.5534	17.108	17.018	18.571	0					66	37	2	0	0	0	0.54316	1	4947	4947		41.08	2.366	1	12556000			13322	3558	8656	8689	13518	13518					0.0014850291818220285
GLQASRSDIK	10	Unmodified	_GLQASRSDIK_					0	0	0		SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.801025390625	2	537.798737	1073.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.628	1	15.628	15.128	16.128	0								0	0	0	0.30854	1	3602	3602		49.536	3.0793	1				13323	1827	8657	8690	13519	13519					0.04907342357887501
GLQGPPGKL	9	Unmodified	_GLQGPPGKL_					0	0	0		ENSG00000165471|ENST00000674931|MBL2	ENSG00000165471|ENST00000674931|MBL2	ENSG00000165471|ENST00000674931|MBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.7580261230469	2	433.758352	865.502152	-0.26394	-0.00011449	0.7504	0.00032549	0.48645	0.000211	433.75832346121814	28.443	0.14659	28.443	28.362	28.509	0					8	5	2	0	0	0	0.21116	1	8890	8890		60.294	0	1	86850			13324	5798	8658	8691	13520	13520					0.06402106105667826
GLQHVQPAGQ	10	Unmodified	_GLQHVQPAGQ_					0	0	0		ENSG00000147443|ENST00000276420|DOK2	ENSG00000147443|ENST00000276420|DOK2	ENSG00000147443|ENST00000276420|DOK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7725219726562	2	517.772522	1033.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.151	1	16.151	15.651	16.651	0								0	0	0	0.35368	1	3631	3631		42.396	6.7778	1				13325	4781	8659	8692	13521	13521					0.01506804014957197
GLQLLANAVI	10	Unmodified	_GLQLLANAVI_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.3136291503906	2	506.313492	1010.61243	-0.041073	-2.0796E-05	-0.24241	-0.00012273	-0.28348	-0.00014353	506.313387741865	43.734	0.24857	43.734	43.623	43.871	0					18	13	2	0	0	0	0.64162	1	16468	16468		17.365	0	1	100910			13326	3218	8660	8693	13522	13522					0.1075490637402936
GLQRGLLEL	9	Unmodified	_GLQRGLLEL_					0	0	0			REV__nc|ENSG00000162437|Q9HCJ3-2|RAVER2	REV__nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.80352783203125	2	499.803291	997.59203	-0.049697	-2.4839E-05	0.18535	9.2637E-05	0.13565	6.7798E-05	499.8035579876365	17.07	0.13082	17.07	16.978	17.109	0					7	4	2	0	0	0	0.41113	1	4008	4008		40.778	0	1	74203	+		13327	15813	8661	8694	13523	13523					0.09313735714226823
GLQSLKITQP	10	Unmodified	_GLQSLKITQP_					0	0	0			REV__ENST00000263636.4_1_2:160741749-160742974:-|nuORF	REV__ENST00000263636.4_1_2:160741749-160742974:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.1985168457031	3	362.21688	1083.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.939	1	15.939	15.439	16.439	0								0	0	0	0.39244	1	3728	3728		30.569	9.7317	1		+		13328	18048	8662	8695	13524	13524					0.09033987540124144
GLQTEIDVR	9	Unmodified	_GLQTEIDVR_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.779541015625	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.66	1	40.66	40.16	41.16	0								0	0	0	0.29356	1	16025	16025		36.447	4.4919	1		+		13329	15125	8663	8696	13525	13525					0.03188251092274186
GLQTLRGPS	9	Unmodified	_GLQTLRGPS_					0	0	0		FBXO15|p.K232Nfs*5|1|0.18|ENSG00000141665|chr18:74129494-74129494|T/-|frameshift_variant;FBXO15|p.F416Lfs*5|1|0.26|ENSG00000141665|chr18:74081942-74081942|A/-|frameshift_variant;ENSG00000141665|ENST00000419743|FBXO15	FBXO15|p.K232Nfs*5|1|0.18|ENSG00000141665|chr18:74129494-74129494|T/-|frameshift_variant	FBXO15|p.K232Nfs*5|1|0.18|ENSG00000141665|chr18:74129494-74129494|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7640075683594	2	464.764166	927.513779	0.5438	0.00025274	-0.99521	-0.00046254	-0.45141	-0.0002098	464.76371702644326	24.493	0.26481	24.493	24.405	24.67	0					10	6	2	0	0	0	0.44593	1	8267	8267		37.812	2.1932	1	353530			13330	4465	8664	8697	13526	13526					0.04712303128997064
GLQVDGRK	8	Unmodified	_GLQVDGRK_					0	0	0		tr|U7SXX9|U7SXX9_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00877PE=4SV=1	tr|U7SXX9|U7SXX9_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00877PE=4SV=1	tr|U7SXX9|U7SXX9_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00877PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7508239746094	2	436.751059	871.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.958	1	14.958	14.458	15.458	0								0	0	0	1.7419	1	3760	3760		82.305	5.4584	1				13331	22870	8665	8698	13527	13527					0.04668033957523221
GLQVSLGAA	9	Unmodified	_GLQVSLGAA_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	408.2344055175781	2	408.23471	814.454868	0.12896	5.2645E-05	-1.0043	-0.00041001	-0.87539	-0.00035736	408.23441059501187	18.907	0.10015	18.907	18.858	18.958	0					4	2	2	0	0	0	0.53083	1	5038	5038		29.15	1.2673	1	64175			13332	6157	8666	8699	13528	13528					0.040218268346734476
GLREQLELFQ	10	Unmodified	_GLREQLELFQ_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.5591735839844	3	411.559305	1231.65609	0.057396	2.3622E-05	-0.23401	-9.6308E-05	-0.17661	-7.2686E-05	411.5592158699351	29.725	0.31662	29.725	29.616	29.933	0					13	6	4	0	0	0	0.60076	1	11024	11024		25.126	0	1	338250			13333	2504	8667	8700	13529	13529					0.04952471080491705
GLRGRRPA	8	Unmodified	_GLRGRRPA_					0	0	0			REV__ENST00000527223.6_2_19:55670954-55672526:-|nuORF	REV__ENST00000527223.6_2_19:55670954-55672526:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.7734375	2	441.77266	881.530767	3.1282	0.0013819	-0.18822	-8.3151E-05	2.94	0.0012988	441.77250232055206	32.107	0.40495	32.107	31.861	32.266	0					21	16	2	0	0	0	0.7914	1	10688	10688		14.664	0	1	44460	+		13334	19339	8668	8701	13530	13530					0.08526268525451997
GLRIKETK	8	Unmodified	_GLRIKETK_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.79766845703125	2	472.798009	943.581465	-1.4887	-0.00070385	0.89896	0.00042503	-0.58972	-0.00027882	472.7984398320041	19.362	0.10835	19.362	19.312	19.421	0					5	3	2	0	0	0	0.49216	1	5233	5233		60.972	4.2509	1	65334			13335	6575	8669	8702	13531	13531					0.1074175305980134
GLRRRHSL	8	Unmodified	_GLRRRHSL_					0	0	0		ENST00000431044.5_1_22:19706003-19707129:+|nuORF;ENST00000455843.5_1_22:19705679-19706159:+|nuORF	ENST00000431044.5_1_22:19706003-19707129:+|nuORF	ENST00000431044.5_1_22:19706003-19707129:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.20623779296875	3	332.20542	993.59443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.891	1	16.891	16.391	17.391	0								0	0	0	1.7419	1	4668	4668		25.45	0	1				13336	9497	8670	8703	13532	13532					0.09737628962568579
GLRSGTYGDR	10	Unmodified	_GLRSGTYGDR_					0	0	0		nc|ENSG00000116809|Q13105-3|ZBTB17;ENSG00000116809|ENST00000375743|ZBTB17;nc|ENSG00000116809|Q13105-2|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.274658203125	2	541.272887	1080.53122	0.095911	5.1914E-05	2.2447	0.001215	2.3406	0.0012669	541.2744908632902	17.701	0.24216	17.701	17.528	17.77	0					15	7	3	0	0	0	0.54197	1	4476	4476		40.778	5.6261	1	125540			13337	3006	8671	8704	13533	13533					-0.005824013360097524
GLRSPPPAPP	10	Unmodified	_GLRSPPPAPP_					0	0	0			REV__ENST00000216373.9_1_14:50671095-50698242:-|nuORF	REV__ENST00000216373.9_1_14:50671095-50698242:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.1907653808594	3	330.190665	987.550165	0.54551	0.00018012	-0.1483	-4.8969E-05	0.39721	0.00013115	330.1906099500584	17.575	1.2787	17.575	17.466	18.745	0					48	25	2	0	0	0	0.41384	1	5253	5253		54.722	10.345	1	320630	+		13338	17881	8672	8705	13534	13534					0.0558918002569726
GLRVDKTVY	9	Unmodified	_GLRVDKTVY_					0	0	0		ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8019409179688	2	525.800749	1049.58694	-1.2355	-0.00064964	-0.51145	-0.00026892	-1.747	-0.00091856	525.8004649883816	25.927	0.61913	25.927	25.67	26.289	0					16	12	2	0	0	0	0.42902	1	8335	8335		39.253	1.4413	1	67108			13339	7944	8673	8706	13535	13535					0.06413431851615314
GLRYLLAMRLH	11	Unmodified	_GLRYLLAMRLH_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;DMXL2|p.M1691*|1|0.08|ENSG00000104093|chr15:51488100-51488100|T/-|frameshift_variant;DMXL2|p.F1695Sfs*15|3|0.27|ENSG00000104093|chr15:51488087-51488087|A/-|frameshift_variant;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant;DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant	nc|ENSG00000104093|Q8TDJ6-2|DMXL2;DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant	DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2645568847656	3	448.264058	1341.77035	0.86007	0.00038554	0.25846	0.00011586	1.1185	0.0005014	448.264150357192	19.833	0.2712	19.833	19.723	19.995	0					12	5	4	0	0	0	0.78029	1	6210	6210		19.263	19.263	1	1987600			13340	2267;809	8674	8707	13536	13536					0.11313082361607485
GLSEQEAQK	9	Unmodified	_GLSEQEAQK_					0	0	0		nc|ENSG00000082212|P23368-2|ME2;ENSG00000082212|ENST00000321341|ME2	nc|ENSG00000082212|P23368-2|ME2	nc|ENSG00000082212|P23368-2|ME2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2486572265625	2	495.248546	988.482539	0.74185	0.0003674	-0.43166	-0.00021378	0.31019	0.00015362	495.2483381784589	16.765	0.16809	16.765	16.662	16.83	0					11	4	4	0	0	0	0.014413	1	4610	4610		127.46	0	1	700350			13341	1672	8675	8708	13537	13537					-0.012163146957618665
GLSEVQLNHM	10	Unmodified	_GLSEVQLNHM_					0	0	0		ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENSG00000139372|ENST00000392872|TDG	ENST00000542926.5_1_12:104373661-104376713:+|nuORF	ENST00000542926.5_1_12:104373661-104376713:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.52325439453125	3	376.521974	1126.54409	3.2529	0.0012248	-0.090906	-3.4228E-05	3.162	0.0011906	376.52199127437075	16.965	0.21372	16.965	16.859	17.073	0					8	4	3	0	0	0	0.60281	1	4820	4820		33.922	1.1711	1	1529400			13342	4325	8676	8709	13538	13538					-0.01411706268117996
GLSFGKKEK	9	Unmodified	_GLSFGKKEK_					0	0	0		ENST00000530533.5_1_11:134126456-134129738:+|nuORF;ENST00000524739.1_1_11:134129171-134129964:+|nuORF;ENST00000533387.5_1_11:134123508-134129738:+|nuORF;ENST00000527082.5_1_11:134129171-134129738:+|nuORF;ENST00000528325.5_1_11:134126509-134129738:+|nuORF;ENST00000524426.5_1_11:134126456-134131533:+|nuORF;nc|ENSG00000151498|Q9UKU7-2|ACAD8;ENST00000531338.5_1_11:134126482-134132106:+|nuORF;nc|ENSG00000151498|Q9UKU7-3|ACAD8;ENST00000526026.5_1_11:134126984-134132770:+|nuORF;ENSG00000151498|ENST00000281182|ACAD8	ENST00000530533.5_1_11:134126456-134129738:+|nuORF	ENST00000530533.5_1_11:134126456-134129738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2894287109375	2	497.290017	992.565481	-0.057842	-2.8764E-05	-1.4051	-0.00069876	-1.463	-0.00072752	497.28935576406	18.905	0.15388	18.905	18.813	18.967	0					8	4	2	0	0	0	0.3269	1	4794	4794		47.96	0.30219	1	170880			13343	4969	8677	8710	13539	13539					0.06890046822900331
GLSGGVLGK	9	Unmodified	_GLSGGVLGK_					0	0	0			REV__ENSG00000214787|ENST00000651255|MS4A4E	REV__ENSG00000214787|ENST00000651255|MS4A4E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.2371520996094	2	394.237253	786.459953	0.57675	0.00022738	-0.36037	-0.00014207	0.21638	8.5306E-05	394.2369935823365	18.757	0.11314	18.757	18.685	18.798	0					5	3	2	0	0	0	0.37197	1	4733	4733		44.117	5.3107	1	51649	+		13344	17586	8678	8711	13540	13540					0.05818130697275592
GLSGGVLGK	9	Unmodified	_GLSGGVLGK_					0	0	0			REV__ENSG00000214787|ENST00000651255|MS4A4E	REV__ENSG00000214787|ENST00000651255|MS4A4E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.2372741699219	2	394.237253	786.459953	0.89561	0.00035308	-0.63877	-0.00025183	0.25685	0.00010126	394.2369954185897	19.086	0.1783	19.086	19.004	19.182	0					7	4	2	0	0	0	0.099922	1	5706	5706		79.451	8.1553	1	419910	+		13345	17586	8678	8711	13541	13541					0.05818130697275592
GLSKEVVGK	9	Unmodified	_GLSKEVVGK_					0	0	0			REV__ENSG00000181418|ENST00000421952|DDN	REV__ENSG00000181418|ENST00000421952|DDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7815246582031	2	458.776742	915.538931	-0.41483	-0.00019031	-0.14353	-6.5849E-05	-0.55836	-0.00025616	458.776674267452	16.662	0.12079	16.662	16.599	16.719	0					7	4	2	0	0	0	0.48389	1	3818	3818		34.173	1.3601	1	297380	+		13346	16846	8679	8712	13542	13542					0.07778357931579194
GLSLAGMASI	10	Unmodified	_GLSLAGMASI_					0	0	0			REV__ENSG00000187905|ENST00000442047|LRRC74B	REV__ENSG00000187905|ENST00000442047|LRRC74B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2497253417969	2	460.249503	918.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.785	1	22.785	22.285	23.285	0								0	0	0	0.26105	1	6846	6846		56.721	3.3696	1		+		13347	17145	8680	8713	13543	13543					0.021950227884985907
GLSLGISPVVC	11	Unmodified	_GLSLGISPVVC_					0	0	0			REV__ENST00000359321.1_1_7:152357836-152373217:-|nuORF	REV__ENST00000359321.1_1_7:152357836-152373217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7919921875	2	522.791535	1043.56852	1.0892	0.00056943	2.1378	0.0011176	3.227	0.001687	522.7916357751757	21.206	0.19712	21.206	21.064	21.261	0					6	4	2	0	0	0	0.56817	1	6118	6118		39.253	6.4404	1	109230	+		13348	18547	8681	8714	13544	13544					0.048475538854063416
GLSLGPGAAA	10	Unmodified	_GLSLGPGAAA_					0	0	0		PRSS16|p.G318Afs*30|1|0.4|ENSG00000112812|chr6:27251981-27251981|G/-|frameshift_variant;ENSG00000112812|ENST00000230582|PRSS16	PRSS16|p.G318Afs*30|1|0.4|ENSG00000112812|chr6:27251981-27251981|G/-|frameshift_variant	PRSS16|p.G318Afs*30|1|0.4|ENSG00000112812|chr6:27251981-27251981|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.22674560546875	2	407.226885	812.439217	-0.55794	-0.00022721	0.31437	0.00012802	-0.24357	-9.9189E-05	407.227020963404	17.314	0.55568	17.314	16.891	17.447	0					24	11	3	0	0	0	0.58896	1	4952	4952		35.618	6.4687	1	287610			13349	2762	8682	8715	13545	13545					0.025495403176137188
GLSLLNLGRR	10	Unmodified	_GLSLLNLGRR_					0	0	0		ENST00000488949.1_1_20:56884861-56920492:+|nuORF	ENST00000488949.1_1_20:56884861-56920492:+|nuORF	ENST00000488949.1_1_20:56884861-56920492:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.896240234375	3	366.896252	1097.66693	0.75578	0.00027729	-0.6774	-0.00024853	0.078381	2.8758E-05	366.8959063300897	17.265	0.17276	17.265	17.185	17.357	0					7	4	2	0	0	0	0.72821	1	4852	4852		22.58	10.373	1	574380			13350	10050	8683	8716	13546	13546					0.1219991824546014
GLSLSAPGTL	10	Unmodified	_GLSLSAPGTL_					0	0	0			REV__ENST00000547031.5_1_12:53292389-53294972:-|nuORF	REV__ENST00000547031.5_1_12:53292389-53294972:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.26080322265625	2	458.260925	914.507297	-0.4405	-0.00020186	-0.13063	-5.9862E-05	-0.57113	-0.00026173	458.2608399591632	25.67	0.60318	25.67	25.414	26.017	0					40	10	7	0	0	0	0.30737	1	8982	8982		66.429	0	1	11842000	+		13351	20172	8684	8717	13547	13547					0.04662365177614447
GLSLSKTKGL	10	Unmodified	_GLSLSKTKGL_					0	0	0		ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.2095642089844	3	335.209725	1002.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.148	1	23.148	22.648	23.648	0								0	0	0	0.4201	1	7935	7935		11.636	0	1				13352	7863	8685	8718	13548	13548					0.10614602511429894
GLSLYDEEPGS	11	Unmodified	_GLSLYDEEPGS_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.7627563476562	2	583.764226	1165.5139	1.3682	0.00079873	-3.0766	-0.001796	-1.7084	-0.0009973	583.7618780939723	35.068	0.19073	35.068	34.998	35.189	0					9	5	2	0	0	0	0.47622	1	13575	13575		45.972	3.108	1	101290	+		13353	16463	8686	8719	13549	13549					-0.062237864523240205
GLSLYPVMVP	10	Unmodified	_GLSLYPVMVP_					0	0	0			REV__MGAM|p.W1242L|1|0.31|ENSG00000257335|chr7:142058234-142058234|G/T|missense_variant	REV__MGAM|p.W1242L|1|0.31|ENSG00000257335|chr7:142058234-142058234|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2012939453125	3	359.200061	1074.57835	3.0933	0.0011111	0.35564	0.00012775	3.4489	0.0012389	359.2001480167985	19.369	0.56438	19.369	19.26	19.825	0					22	11	4	0	0	0	0.56015	1	5963	5963		35.152	4.8343	1	2485100	+		13354	20882	8687	8720	13550	13550					0.0440474189078941
GLSMQILVN	9	Oxidation (M)	_GLSM(Oxidation (M))QILVN_		GLSM(1)QILVN		GLSM(53)QILVN	0	0	1		ENST00000405333.5_1_2:10584278-10584637:-|nuORF	ENST00000405333.5_1_2:10584278-10584637:-|nuORF	ENST00000405333.5_1_2:10584278-10584637:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7655334472656	2	495.76806	989.521567	-2.407	-0.0011933	-0.61076	-0.00030279	-3.0177	-0.0014961	495.7676814588249	29.182	0.25446	29.182	29.042	29.297	0					13	7	2	0	0	0	0.26904	1	9754	9754		53.351	9.2347	1	231140			13355	9276	8688	8721	13551	13551		375			0.026386943342799896
GLSQLLVLCR	10	Unmodified	_GLSQLLVLCR_					0	0	0		ENST00000333046.8_3_9:140086129-140086441:-|nuORF	ENST00000333046.8_3_9:140086129-140086441:-|nuORF	ENST00000333046.8_3_9:140086129-140086441:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.3251342773438	2	551.326076	1100.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.357	1	44.357	43.857	44.857	0								0	0	0	0.3185	1	17277	17277		47.96	3.5823	1				13356	8684	8689	8722	13552	13552					0.09130637904945615
GLSRGGQRNQ	10	Unmodified	_GLSRGGQRNQ_					0	0	0		ENST00000361479.9_1_13:20221406-20222581:+|nuORF	ENST00000361479.9_1_13:20221406-20222581:+|nuORF	ENST00000361479.9_1_13:20221406-20222581:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7861938476562	2	536.783953	1071.55335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.181	1	19.181	18.681	19.681	0								0	0	0	0.33107	1	5151	5151		45.972	5.9141	1				13357	8871	8690	8723	13553	13553					0.020438231324078515
GLSRLALN	8	Unmodified	_GLSRLALN_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2562255859375	2	422.255977	842.497401	-0.03087	-1.3035E-05	-0.27705	-0.00011699	-0.30792	-0.00013002	422.2559157245244	25.09	0.22332	25.09	24.999	25.222	0					12	5	3	0	0	0	0.35045	1	7919	7919		76.774	2.5191	1	477640	+		13358	16196	8691	8724	13554	13554					0.06985221962895594
GLSRPPKTGK	10	Unmodified	_GLSRPPKTGK_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|67|3|sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|67|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.81494140625	2	520.81419	1039.61383	0.70579	0.00036759	-0.27274	-0.00014205	0.43305	0.00022554	520.8139383130249	22.354	0.34654	22.354	22.088	22.434	0					18	10	3	0	0	0	0.3783	1	6265	6265		54.722	13.296	1	161130	+		13359	20832	8692	8725	13555	13555					0.09560540462803147
GLSRSENSKR	10	Unmodified	_GLSRSENSKR_					0	0	0			REV__nc|ENSG00000126883|P35658-5|NUP214	REV__nc|ENSG00000126883|P35658-5|NUP214	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3062744140625	2	567.304718	1132.59488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.469	1	41.469	40.969	41.969	0								0	0	0	0.39264	1	16497	16497		32.751	1.2207	1		+		13360	21011	8693	8726	13556	13556					0.033889591011075026
GLSSAGLPGK	10	Unmodified	_GLSSAGLPGK_					0	0	0			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7530517578125	2	443.753267	885.491981	-0.48849	-0.00021677	-0.048972	-2.1731E-05	-0.53746	-0.0002385	443.75326079750533	23.784	0.16279	23.784	23.683	23.846	0					7	3	3	0	0	0	0.30737	1	8129	8129		66.429	13.493	1	195100	+		13361	16506	8694	8727	13557	13557					0.04465498380432109
GLSSKGTSGL	10	Unmodified	_GLSSKGTSGL_					0	0	0			REV__nc|ENSG00000166863|Q9UHF0-2|TAC3	REV__nc|ENSG00000166863|Q9UHF0-2|TAC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7481689453125	2	453.748182	905.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.271	1	17.271	16.771	17.771	0								0	0	0	0.26105	1	4271	4271		56.721	10.769	1		+		13362	21107	8695	8728	13558	13558					0.025288906552077606
GLSSVEKQP	9	Unmodified	_GLSSVEKQP_					0	0	0			REV__ENST00000464900.5_1_X:46306754-46307940:+|nuORF	REV__ENST00000464900.5_1_X:46306754-46307940:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.756103515625	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.488	1	27.488	26.988	27.988	0								0	0	0	0.36609	1	9000	9000		20.947	0.4651	1		+		13363	19405	8696	8729	13559	13559					0.023451771722420744
GLSTDKQIG	9	Unmodified	_GLSTDKQIG_					0	0	0			REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7479248046875	2	459.748182	917.481811	0.72226	0.00033206	-1.5132	-0.00069571	-0.79098	-0.00036365	459.74757047795094	16.072	0.61253	16.072	15.617	16.23	0					28	12	3	0	0	0	0.071197	1	4537	4537		87.754	15.877	1	532440	+		13364	19446	8697	8730	13560	13560					0.019768906551917098
GLSTDKQIG	9	Unmodified	_GLSTDKQIG_					0	0	0			REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7478332519531	2	459.748182	917.481811	-2.589	-0.0011903	2.4686	0.0011349	-0.12046	-5.538E-05	459.7490663102159	15.847	0.22761	15.847	15.665	15.893	0					14	9	2	0	0	0	0.47038	1	3601	3601		35.618	2.1027	1	48399	+		13365	19446	8697	8730	13561	13561					0.019768906551917098
GLSTFLGAAV	10	Unmodified	_GLSTFLGAAV_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.26324462890625	2	468.263468	934.512382	0.30252	0.00014166	-0.47507	-0.00022246	-0.17255	-8.0799E-05	468.2631558697633	35.347	0.23747	35.347	35.268	35.506	0					14	6	3	0	0	0	0.31306	1	13259	13259		65.803	0.33779	1	245100			13366	945	8698	8731	13562	13562					0.04250669040231969
GLSTTPRPA	9	Unmodified	_GLSTTPRPA_					0	0	0		ENST00000216129.6_1_22:43563724-43563883:-|nuORF	ENST00000216129.6_1_22:43563724-43563883:-|nuORF	ENST00000216129.6_1_22:43563724-43563883:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2502136230469	2	450.250892	898.48723	-1.1856	-0.0005338	0.16119	7.2574E-05	-1.0244	-0.00046123	450.250821698555	21.444	0.13372	21.444	21.386	21.52	0					7	4	2	0	0	0	0.54267	1	6173	6173		27.882	1.0861	1	53398			13367	8160	8699	8732	13563	13563					0.03392614237657199
GLSVGPGP	8	Unmodified	_GLSVGPGP_					0	0	0		ENST00000375534.7_2_1:17301125-17301296:-|nuORF	ENST00000375534.7_2_1:17301125-17301296:-|nuORF	ENST00000375534.7_2_1:17301125-17301296:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	342.1892395019531	2	342.189771	682.36499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.033	1	18.033	17.533	18.533	0								0	0	0	1.7419	1	4424	4424		24.504	1.4673	1				13368	9031	8700	8733	13564	13564					0.011101972260917137
GLSVREAL	8	Unmodified	_GLSVREAL_					0	0	0		ENST00000471517.5_1_19:38845366-38853372:+|nuORF	ENST00000471517.5_1_19:38845366-38853372:+|nuORF	ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7478942871094	2	422.747985	843.481417	0.99198	0.00041936	-1.2678	-0.00053594	-0.27578	-0.00011658	422.7475063192631	19.268	0.23919	19.268	19.083	19.322	0					9	5	3	0	0	0	0.37378	1	5796	5796		73.975	2.679	1	1109600			13369	9853	8701	8734	13565	13565					0.053415157259905754
GLSYDRSI	8	Unmodified	_GLSYDRSI_					0	0	0			REV__nc|ENSG00000155229|Q96T76-7|MMS19	REV__nc|ENSG00000155229|Q96T76-7|MMS19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7348937988281	2	455.735074	909.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.414	1	28.414	27.914	28.914	0								0	0	0	1.7419	1	10292	10292		65.803	7.0212	1		+		13370	15591	8702	8735	13566	13566					-0.0027537851628949284
GLTCDKICSM	10	Unmodified	_GLTCDKICSM_					0	0	0		ENST00000442655.2_1_4:9032265-9032511:+|nuORF	ENST00000442655.2_1_4:9032265-9032511:+|nuORF	ENST00000442655.2_1_4:9032265-9032511:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7401123046875	2	535.737588	1069.46062	3.3603	0.0018002	1.2693	0.00068001	4.6296	0.0024802	535.738485375416	41.436	0.33409	41.436	41.343	41.677	0					17	8	3	0	0	0	0.50881	1	16485	16485		44.377	0.26039	1	389850			13371	9590	8703	8736	13567	13567					-0.07132902031844424
GLTCLEMII	9	Unmodified	_GLTCLEMII_					0	0	0			REV__nc|ENSG00000169398|Q05397-4|PTK2	REV__nc|ENSG00000169398|Q05397-4|PTK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7615661621094	2	496.761389	991.508225	0.98836	0.00049098	-0.67521	-0.00033542	0.31315	0.00015556	496.76145338506007	29.426	0.50824	29.426	29.19	29.698	0					34	10	5	0	0	0	0.37197	1	10802	10802		44.117	5.3107	1	984410	+		13372	16311	8704	8737	13568	13568					0.012131202306704836
GLTEKLKQ	8	Unmodified	_GLTEKLKQ_					0	0	0			REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.78057861328125	2	458.776742	915.538931	-0.6537	-0.0002999	0.14722	6.7541E-05	-0.50649	-0.00023236	458.77688967332364	16.977	0.25793	16.977	16.887	17.145	0					9	6	2	0	0	0	0.5676	1	4681	4681		53.351	0	1	1770400	+		13373	20958	8705	8738	13569	13569					0.07778357931579194
GLTISSLLK	9	Unmodified	_GLTISSLLK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000572607.1_1_17:454958-465900:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2945556640625	2	466.294768	930.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.596	1	44.596	44.096	45.096	0								0	0	0	0.3245	1	17868	17868		30.318	1.1682	1				13374	4434	8706	8739	13570	13570					0.10691815108418723
GLTLYLHK	8	Unmodified	_GLTLYLHK_					0	0	0			REV__ENSG00000152779|ENST00000371790|SLC16A12	REV__ENSG00000152779|ENST00000371790|SLC16A12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.28125	2	472.781828	943.549102	-1.4984	-0.00070839	-2.5612	-0.0012109	-4.0596	-0.0019193	472.78060750986856	25.489	0.08831	25.489	25.45	25.538	0					6	3	2	0	0	0	0.60719	1	7950	7950		47.916	1.9434	1	49044	+		13375	15518	8707	8740	13571	13571					0.07506965656796183
GLTNYAATY	9	Unmodified	_GLTNYAATY_					0	0	0		ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENST00000465511.1_1_11:118431647-118432142:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2366943359375	2	487.234907	972.455261	2.5523	0.0012436	0.53663	0.00026147	3.0889	0.001505	487.23517563453566	23.509	0.36148	23.509	23.401	23.763	0					16	7	3	0	0	0	0.087861	1	7973	7973		82.241	10.363	1	897920			13376	9778	8708	8741	13572	13572					-0.032067982361581926
GLTPFLGCSQ	10	Unmodified	_GLTPFLGCSQ_					0	0	0			REV__ENSG00000253293|ENST00000283921|HOXA10	REV__ENSG00000253293|ENST00000283921|HOXA10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7545166015625	2	511.75241	1021.49027	3.1061	0.0015896	0.13554	6.9363E-05	3.2417	0.0016589	511.7526644042094	15.138	0.46955	15.138	14.928	15.397	0					25	9	4	0	0	0	0.41335	1	3911	3911		54.776	12.38	1	1828300	+		13377	17734	8709	8742	13573	13573					-0.01961878699830777
GLTQREIDR	9	Unmodified	_GLTQREIDR_					0	0	0		ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11	ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant	ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2985229492188	2	544.296362	1086.57817	3.6815	0.0020038	0.4065	0.00022126	4.088	0.0022251	544.2962722863069	34.475	0.92448	34.475	33.793	34.717	0					42	19	4	0	0	0	0.46194	1	13225	13225		36.447	36.447	1	824630			13378	214	8710	8743	13574	13574					0.038344582151466966
GLTSPNITN	9	Unmodified	_GLTSPNITN_					0	0	0			REV__ENST00000531980.5_1_1:67337151-67359009:-|nuORF	REV__ENST00000531980.5_1_1:67337151-67359009:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.74017333984375	2	458.740357	915.46616	0.72258	0.00033148	-3.7046	-0.0016995	-2.982	-0.001368	458.74001782528006	34.782	0.44051	34.782	34.53	34.97	0					31	12	5	0	0	0	0.25716	1	13454	13454		54.776	0.053964	1	253080	+		13379	15517	8711	8744	13575	13575					0.00504604138131981
GLTVQRGLSA	10	Unmodified	_GLTVQRGLSA_					0	0	0			REV__ENST00000425013.6_1_7:5661541-5661721:-|nuORF	REV__ENST00000425013.6_1_7:5661541-5661721:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29083251953125	2	501.290548	1000.56654	1.1197	0.00056129	-0.68072	-0.00034124	0.43898	0.00022006	501.2901255900728	49.309	1.2755	49.309	49.113	50.389	0					158	63	3	0	0	0	0.68892	1	19842	19842		18.262	0	1	643040	+		13380	19107	8712	8745	13576	13576					0.06628261191804086
GLTWILMN	8	Oxidation (M)	_GLTWILM(Oxidation (M))N_		GLTWILM(1)N		GLTWILM(71)N	0	0	1		ENST00000367033.3_1_1:208417094-208417160:-|nuORF	ENST00000367033.3_1_1:208417094-208417160:-|nuORF	ENST00000367033.3_1_1:208417094-208417160:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.24981689453125	2	482.252046	962.489538	-1.3137	-0.00063351	-2.5892	-0.0012487	-3.9029	-0.0018822	482.25093785314345	30.716	0.37101	30.716	30.645	31.016	0					34	13	4	0	0	0	0.3961	1	10099	10099		71.296	16.573	1	862880			13381	8906	8713	8746	13577	13577		351			0.00679326651129486
GLVAPLGDFR	10	Unmodified	_GLVAPLGDFR_					0	0	0			REV__ENSG00000204610|ENST00000376694|TRIM15	REV__ENSG00000204610|ENST00000376694|TRIM15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.865966796875	3	348.86607	1043.57638	0.51261	0.00017883	-0.7362	-0.00025683	-0.22359	-7.8003E-05	348.86572583378313	22.685	0.26082	22.685	22.584	22.845	0					10	5	3	0	0	0	0.661	1	7727	7727		18.262	0	1	301760	+		13382	17492	8714	8747	13578	13578					0.05633449197171103
GLVAQLFIF	9	Unmodified	_GLVAQLFIF_					0	0	0			REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.548944203961612|0.3234029913481031|2.98|483.0|36|2|anti-sense	REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.548944203961612|0.3234029913481031|2.98|483.0|36|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5340576171875	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.616	1	49.616	49.116	50.116	0								0	0	0	0.36609	1	16338	16338		20.947	6.0821	1		+		13383	20808	8715	8748	13579	13579					0.0821242283365109
GLVAVSPSSL	10	Unmodified	_GLVAVSPSSL_					0	0	0			REV__ENST00000262238.8_1_14:100746059-100746380:+|nuORF	REV__ENST00000262238.8_1_14:100746059-100746380:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.26904296875	2	465.26875	928.522947	-0.49043	-0.00022818	0.68263	0.00031761	0.1922	8.9426E-05	465.26909607753197	33.407	0.16626	33.407	33.3	33.466	0					6	3	2	0	0	0	0.42631	1	12682	12682		53.351	3.9099	1	101970	+		13384	18028	8716	8749	13580	13580					0.05582651694669494
GLVCLQSIT	9	Carbamidomethyl (C)	_GLVC(Carbamidomethyl (C))LQSIT_	GLVC(1)LQSIT		GLVC(50)LQSIT		0	1	0		OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7657470703125	2	495.76806	989.521567	-1.2192	-0.00060443	-3.0011	-0.0014878	-4.2202	-0.0020923	495.7664706444443	29.159	0.30117	29.159	28.96	29.261	0					21	12	2	0	0	0	0.30268	1	9444	9444		50.025	7.5501	1	419740			13385	5839	8717	8750	13581	13581	246				0.026386943342572522
GLVFAVGG	8	Unmodified	_GLVFAVGG_					0	0	0		nc|ENSG00000109466|O95198-3|KLHL2;ENSG00000109466|ENST00000226725|KLHL2;nc|ENSG00000109466|O95198-2|KLHL2	nc|ENSG00000109466|O95198-3|KLHL2	nc|ENSG00000109466|O95198-3|KLHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.20703125	2	360.207964	718.401375	-2.0406	-0.00073503	-1.41	-0.00050788	-3.4506	-0.0012429	360.20739240434824	46.251	0.20296	46.251	46.143	46.346	0					16	12	2	0	0	0	0.77013	1	15641	15641		24.504	0	1	56674			13386	2577	8718	8751	13582	13582					0.030910741228126426
GLVFIVDL	8	Unmodified	_GLVFIVDL_					0	0	0			REV__ENST00000469473.1_1_14:81799307-81799562:-|nuORF	REV__ENST00000469473.1_1_14:81799307-81799562:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2635803222656	2	438.265479	874.516405	-3.1038	-0.0013603	-1.8891	-0.00082793	-4.9929	-0.0021882	438.26460647049726	26.241	0.18626	26.241	26.15	26.336	0					8	4	2	0	0	0	0.67475	1	8410	8410		37.028	1.8278	1	364110	+		13387	19456	8719	8752	13583	13583					0.07412758533939723
GLVGKEEGR	9	Unmodified	_GLVGKEEGR_					0	0	0			REV__ENST00000531828.5_2_1:52195540-52195678:+|nuORF	REV__ENST00000531828.5_2_1:52195540-52195678:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.76171875	2	472.761623	943.508694	-0.70961	-0.00033548	-0.91278	-0.00043153	-1.6224	-0.000767	472.7619904119402	14.514	0.094095	14.514	14.436	14.53	0					6	4	2	0	0	0	0.33044	1	3155	3155		47.657	5.2612	1	61665	+		13388	18570	8720	8753	13584	13584					0.034679992663768644
GLVGQLHWRR	10	Unmodified	_GLVGQLHWRR_					0	0	0			REV__ENST00000498102.1_1_3:42576287-42577770:+|nuORF	REV__ENST00000498102.1_1_3:42576287-42577770:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.3564453125	2	611.351806	1220.68906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.147	1	53.147	52.647	53.647	0								0	0	0	0.4201	1	20521	20521		16.473	0.46637	1		+		13389	14083	8721	8754	13585	13585					0.08754142713860347
GLVGQRLL	8	Unmodified	_GLVGQRLL_					0	0	0			REV__ENST00000433853.1_1_3:183867695-183868220:+|nuORF	REV__ENST00000433853.1_1_3:183867695-183868220:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.27362060546875	2	428.27417	854.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.393	1	31.393	30.893	31.893	0								0	0	0	1.7419	1	10399	10399		35.201	0	1		+		13390	15410	8722	8755	13586	13586					0.1007009885960315
GLVGVTMCV	9	Carbamidomethyl (C),Oxidation (M)	_GLVGVTM(Oxidation (M))C(Carbamidomethyl (C))V_	GLVGVTMC(1)V	GLVGVTM(1)CV	GLVGVTMC(60)V	GLVGVTM(60)CV	0	1	1			REV__ENST00000430767.8_1_17:75211123-75211297:+|nuORF	REV__ENST00000430767.8_1_17:75211123-75211297:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2364196777344	2	476.235538	950.456524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.867	1	42.867	42.367	43.367	0								0	0	0	0.14807	1	17133	17133		60.294	19.516	1		+		13391	19161	8723	8756	13587	13587	686	704			-0.020686234632421474
GLVHRYHSI	9	Unmodified	_GLVHRYHSI_					0	0	0			REV__SLC2A2|p.P78Tfs*6|1|0.11|ENSG00000163581|chr3:171014608-171014609|-/T|frameshift_variant	REV__SLC2A2|p.P78Tfs*6|1|0.11|ENSG00000163581|chr3:171014608-171014609|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.2014465332031	3	361.201564	1080.58286	0.73028	0.00026378	-0.8184	-0.00029561	-0.088121	-3.1829E-05	361.2012486764875	32.266	0.54158	32.266	32.139	32.68	0					17	13	2	0	0	0	0.61124	1	11858	11858		19.997	19.997	1	132570	+		13392	15897	8724	8757	13588	13588					0.04579387148555725
GLVLEGGGMR	10	Unmodified	_GLVLEGGGMR_					0	0	0		tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7615966796875	2	494.765852	987.51715	-0.64468	-0.00031897	-0.90642	-0.00044847	-1.5511	-0.00076743	494.7653751963323	38.427	0.29383	38.427	38.267	38.56	0					10	6	2	0	0	0	0.55603	1	15092	15092		39.253	2.8061	1	60859			13393	22576	8725	8758	13589	13589					0.022892299113664194
GLVLGLAGNP	10	Unmodified	_GLVLGLAGNP_					0	0	0			REV__ENST00000533629.5_1_11:65144527-65149406:-|nuORF	REV__ENST00000533629.5_1_11:65144527-65149406:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.77093505859375	2	455.77146	909.528367	0.0254	1.1577E-05	-0.49285	-0.00022463	-0.46745	-0.00021305	455.77121396065394	25.563	0.26933	25.563	25.416	25.686	0					20	10	3	0	0	0	0.56015	1	7679	7679		38.806	3.1879	1	95363	+		13394	20084	8726	8759	13590	13590					0.06998375277134983
GLVLGLGAL	9	Unmodified	_GLVLGLGAL_					0	0	0		ENST00000466312.5_1_6:31691160-31692010:+|nuORF;nc|ENSG00000204420|O95866-7|MPIG6B;nc|ENSG00000204420|O95866-6|MPIG6B;nc|ENSG00000204420|O95866-2|MPIG6B;ENSG00000204420|ENST00000649779|MPIG6B	ENST00000466312.5_1_6:31691160-31692010:+|nuORF	ENST00000466312.5_1_6:31691160-31692010:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.7655944824219	2	406.765646	811.516739	-0.54512	-0.00022173	0.56207	0.00022863	0.01695	6.8948E-06	406.76578881203255	38.895	0.31364	38.895	38.776	39.09	0					29	11	3	0	0	0	0.31222	1	14771	14771		49.211	0	1	837120			13395	7699	8727	8760	13591	13591					0.10344178253808423
GLVLLAHASQ	10	Unmodified	_GLVLLAHASQ_					0	0	0		RADIL|p.G882Wfs*32|2|0.35|ENSG00000157927|chr7:4801852-4801853|-/G|frameshift_variant	RADIL|p.G882Wfs*32|2|0.35|ENSG00000157927|chr7:4801852-4801853|-/G|frameshift_variant	RADIL|p.G882Wfs*32|2|0.35|ENSG00000157927|chr7:4801852-4801853|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7955627441406	2	504.795466	1007.57638	-0.066545	-3.3591E-05	0.83631	0.00042217	0.76977	0.00038858	504.7955924205379	27.41	0.12327	27.41	27.345	27.468	0					6	4	2	0	0	0	0.49411	1	8441	8441		45.972	4.5456	1	40225			13396	11996	8728	8761	13592	13592					0.07289449197173781
GLVLSLMSH	9	Unmodified	_GLVLSLMSH_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.765380859375	2	478.76532	955.516088	-1.4389	-0.00068889	1.6321	0.00078139	0.19322	9.2505E-05	478.7658357876154	28.236	0.54031	28.236	27.931	28.472	0					29	19	2	0	0	0	0.14734	1	9010	9010		68.485	27.707	1	83116			13397	7249	8729	8762	13593	13593					0.03655015542437923
GLVLVTPAHT	10	Unmodified	_GLVLVTPAHT_					0	0	0			REV__ALG12|p.A295V|1|0.16|ENSG00000182858|chr22:49907829-49907829|G/A|missense_variant	REV__ALG12|p.A295V|1|0.16|ENSG00000182858|chr22:49907829-49907829|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53424072265625	3	336.53432	1006.58113	-0.6741	-0.00022686	0.41209	0.00013868	-0.26201	-8.8175E-05	336.534466120691	24.021	1.191	24.021	23.593	24.784	0					73	40	2	0	0	0	0.73274	1	7183	7183		11.097	0	1	154080	+		13398	12140	8730	8763	13594	13594					0.0781033333993264
GLVLWAGAFY	10	Unmodified	_GLVLWAGAFY_					0	0	0		ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7969970703125	2	548.794935	1095.57532	3.7975	0.0020841	-0.64373	-0.00035327	3.1538	0.0017308	548.7948275166044	44.975	0.32174	44.975	44.874	45.196	0					28	13	3	0	0	0	0.59237	1	17995	17995		35.201	1.0282	1	261930			13399	4004	8731	8764	13595	13595					0.03135234828278044
GLVMALWP	8	Unmodified	_GLVMALWP_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7442321777344	2	443.746399	885.478245	-1.1593	-0.00051441	-2.7753	-0.0012315	-3.9345	-0.0017459	443.74508659209005	24.348	0.13316	24.348	24.249	24.382	0					6	4	2	0	0	0	0.63381	1	7449	7449		43.626	1.1516	1	52546	+		13400	17104	8732	8765	13596	13596					0.03092549347638851
GLVNGLASLE	10	Unmodified	_GLVNGLASLE_					0	0	0			REV__sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	REV__sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.77166748046875	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.693	1	27.693	27.193	28.193	0								0	0	0	0.39244	1	9094	9094		32.812	0.85756	1		+		13401	21586	8733	8766	13597	13597					0.041857502063294305
GLVPAHTAK	9	Unmodified	_GLVPAHTAK_					0	0	0			REV__ENST00000484724.5_1_3:125872139-125877285:-|nuORF	REV__ENST00000484724.5_1_3:125872139-125877285:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2637023925781	2	447.263802	892.513051	-0.389	-0.00017399	-0.1708	-7.639E-05	-0.5598	-0.00025038	447.2637250053555	19.411	0.39438	19.411	19.193	19.587	0					21	9	3	0	0	0	0.49003	1	5198	5198		33.516	1.5607	1	579310	+		13402	19641	8734	8767	13598	13598					0.06249508479936594
GLVQTRRK	8	Unmodified	_GLVQTRRK_					0	0	0			REV__ENSG00000164902|ENST00000297540|PHAX	REV__ENSG00000164902|ENST00000297540|PHAX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.30230712890625	2	479.30125	956.587947	3.4574	0.0016572	-0.51622	-0.00024742	2.9412	0.0014097	479.30108864237076	35.351	0.17566	35.351	35.271	35.446	0					12	8	2	0	0	0	0.72381	1	11942	11942		30.504	0.18592	1	66889	+		13403	16011	8735	8768	13599	13599					0.10791691011172588
GLVRGSFR	8	Unmodified	_GLVRGSFR_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.2605285644531	2	446.261594	890.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.025	1	31.025	30.525	31.525	0								0	0	0	1.7419	1	9937	9937		37.159	0	1				13404	8126	8736	8769	13600	13600					0.059000440570343926
GLVSGFVPSV	10	Unmodified	_GLVSGFVPSV_					0	0	0		OSBPL9|p.D109V|1|0.2|ENSG00000117859|chr1:51745543-51745543|A/T|missense_variant	OSBPL9|p.D109V|1|0.2|ENSG00000117859|chr1:51745543-51745543|A/T|missense_variant	OSBPL9|p.D109V|1|0.2|ENSG00000117859|chr1:51745543-51745543|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.273681640625	2	481.271293	960.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.642	1	32.642	32.142	33.142	0								0	0	0	0.30913	1	10562	10562		49.442	1.5259	1				13405	11889	8737	8770	13601	13601					0.04618955557282334
GLVSVCCCT	9	Unmodified	_GLVSVCCCT_					0	0	0		ENST00000592970.1_3_17:40086676-40086784:-|nuORF	ENST00000592970.1_3_17:40086676-40086784:-|nuORF	ENST00000592970.1_3_17:40086676-40086784:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.68853759765625	2	442.687367	883.360181	0.050023	2.2145E-05	1.68	0.0007437	1.73	0.00076585	442.68845726042156	16.255	0.11724	16.255	16.196	16.313	0					6	2	3	0	0	0	0.49003	1	4621	4621		33.516	3.674	1	271250			13406	10979	8738	8771	13602	13602					-0.0861651429485164
GLVVPAAQPP	10	Unmodified	_GLVVPAAQPP_					0	0	0		ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7795715332031	2	474.779285	947.544017	-0.010749	-5.1034E-06	-0.073203	-3.4755E-05	-0.083952	-3.9859E-05	474.7793933532851	30.143	0.086254	30.143	30.089	30.175	0					5	3	2	0	0	0	0.60613	1	9581	9581		33.516	5.6333	1	65085			13407	6778	8739	8772	13603	13603					0.06814661794180665
GLVVVCFEN	9	Unmodified	_GLVVVCFEN_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2469482421875	2	490.249503	978.484453	0.59983	0.00029407	0.82243	0.0004032	1.4223	0.00069726	490.24998349837017	24.884	0.42001	24.884	24.609	25.029	0					20	9	3	0	0	0	0.45358	1	7776	7776		37.159	0	1	569070	+		13408	15117	8740	8773	13604	13604					-0.0056497721150208235
GLWAVLAW	8	Unmodified	_GLWAVLAW_					0	0	0		nc|ENSG00000079739|P36871-3|PGM1;PGM1|p.A512Pfs*33|1|0.23|ENSG00000079739|chr1:63654398-63654398|G/-|frameshift_variant;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1	nc|ENSG00000079739|P36871-3|PGM1	nc|ENSG00000079739|P36871-3|PGM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.26123046875	2	458.257988	914.501424	4.3126	0.0019763	1.4731	0.00067506	5.7857	0.0026513	458.25872683817835	25.511	0.23487	25.511	25.407	25.642	0					21	8	3	0	0	0	0.42924	1	7928	7928		67.327	23.701	1	635170			13409	1628	8741	8774	13605	13605					0.04075311456597319
GLWGKGVVRK	10	Unmodified	_GLWGKGVVRK_					0	0	0		ENST00000606645.1_1_1:2478503-2478548:+|nuORF	ENST00000606645.1_1_1:2478503-2478548:+|nuORF	ENST00000606645.1_1_1:2478503-2478548:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.2307434082031	3	367.229342	1098.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.982	1	16.982	16.482	17.482	0								0	0	0	0.3805	1	3965	3965		36.447	9.7538	1				13410	11082	8742	8775	13606	13606					0.12081123596408361
GLWQQLAQL	9	Unmodified	_GLWQQLAQL_					0	0	0			REV__nc|ENSG00000204614|Q6P9F5-2|TRIM40	REV__nc|ENSG00000204614|Q6P9F5-2|TRIM40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7945556640625	2	528.795466	1055.57638	0.50586	0.0002675	-3.256	-0.0017218	-2.7502	-0.0014543	528.7936805275265	33.573	0.13509	33.573	33.485	33.62	0					7	4	2	0	0	0	0.36892	1	10934	10934		29.15	0	1	57668	+		13411	21191	8743	8776	13607	13607					0.050814491971550524
GLWSVSPLP	9	Unmodified	_GLWSVSPLP_					0	0	0		ENST00000477157.5_1_22:17623970-17624138:-|nuORF	ENST00000477157.5_1_22:17623970-17624138:-|nuORF	ENST00000477157.5_1_22:17623970-17624138:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.26739501953125	2	478.26601	954.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.834	1	33.834	33.334	34.334	0								0	0	0	0.14807	1	12550	12550		60.294	2.064	1				13412	9919	8744	8777	13608	13608					0.0383897290286086
GLWTPLLTMC	10	Unmodified	_GLWTPLLTMC_					0	0	0			REV__TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	REV__TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.7880249023438	2	567.787938	1133.56132	0.27916	0.00015851	0.36696	0.00020836	0.64612	0.00036686	567.788262184409	11.892	0.69708	11.892	11.813	12.51	0					33	18	4	0	0	0	0.73697	1	2623	2623		15.642	1.5047	1	796940	+		13413	16199	8745	8778	13609	13609					-0.00011501986682560528
GLWVNTRT	8	Unmodified	_GLWVNTRT_					0	0	0		ENST00000419640.1_1_2:192108745-192110761:-|nuORF	ENST00000419640.1_1_2:192108745-192110761:-|nuORF	ENST00000419640.1_1_2:192108745-192110761:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7603454589844	2	473.758884	945.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.985	1	20.985	20.485	21.485	0								0	0	0	1.7419	1	6599	6599		42.474	1.9018	1				13414	9385	8746	8779	13610	13610					0.028283204745775947
GLWWNPAPY	9	Unmodified	_GLWWNPAPY_					0	0	0		ENST00000560804.6_3_19:42595706-42595865:-|nuORF;nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086|POU2F2	ENST00000560804.6_3_19:42595706-42595865:-|nuORF	ENST00000560804.6_3_19:42595706-42595865:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.2691650390625	2	552.269084	1102.52362	0.61244	0.00033823	0.36836	0.00020343	0.9808	0.00054166	552.2695857865356	40.775	0.21169	40.775	40.735	40.947	0					11	5	3	0	0	0	0.41113	1	15541	15541		33.516	0.70317	1	52404			13415	10694	8747	8780	13611	13611					-0.023545088656419466
GLYGKSLGLK	10	Unmodified	_GLYGKSLGLK_					0	0	0		tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.8790588378906	3	345.878087	1034.61243	1.5113	0.00052273	1.2475	0.00043149	2.7588	0.00095422	345.87855776950687	20.135	0.61467	20.135	20.027	20.642	0					27	12	3	0	0	0	0.14426	1	6329	6329		70.399	8.7073	1	15827000			13416	22607	8748	8781	13612	13612					0.09650906374031365
GLYLALGAGF	10	Unmodified	_GLYLALGAGF_					0	0	0		sp|Q6SVX2|TRS1_HCMVMProteinTRS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRS1PE=1SV=1;sp|P09695|TRS1_HCMVAProteinHHLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRS1PE=1SV=1;sp|P09715|IRS1_HCMVAProteinIRS1OS=Humancytomegalovirus(strainAD169)OX=10360GN=IRS1PE=1SV=1;sp|Q6SW04|IRS1_HCMVMProteinIRS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=IRS1PE=3SV=1	sp|Q6SVX2|TRS1_HCMVMProteinTRS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRS1PE=1SV=1	sp|Q6SVX2|TRS1_HCMVMProteinTRS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRS1PE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2755432128906	2	491.273835	980.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.842	1	40.842	40.342	41.342	0								0	0	0	0.34018	1	14481	14481		44.531	0.41427	1				13417	22463	8749	8782	13613	13613					0.04207259419899856
GLYLGKAK	8	Unmodified	_GLYLGKAK_					0	0	0		ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2632141113281	2	425.263271	848.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.719	1	27.719	27.219	28.219	0								0	0	0	1.7419	1	9105	9105		28.254	1.4582	1				13418	9507	8750	8783	13614	13614					0.08167294111046886
GLYLGSIMK	9	Unmodified	_GLYLGSIMK_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2754821777344	2	491.275521	980.536489	0.80949	0.00039768	-1.4282	-0.00070165	-0.61872	-0.00030396	491.27477636336704	41.131	0.19343	41.131	41.037	41.231	0					19	9	3	0	0	0	0.12239	1	15625	15625		74.255	0	1	144010	+		13419	15633	8751	8784	13615	13615					0.045441862022585156
GLYLGSIMK	9	Unmodified	_GLYLGSIMK_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.275146484375	2	491.275521	980.536489	0.58509	0.00028744	-1.6276	-0.00079961	-1.0425	-0.00051217	491.2747499550515	41.08	0.30897	41.08	40.976	41.285	0					26	12	4	0	0	0	0.037569	1	16147	16147		101.6	0	1	378970	+		13420	15633	8751	8784	13616	13616					0.045441862022585156
GLYLGSIMK	9	Unmodified	_GLYLGSIMK_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2749328613281	2	491.275521	980.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.041	1	41.041	40.541	41.541	0								0	0	0	0.072369	1	16298	16298		79.713	0	1		+		13421	15633	8751	8784	13617	13617					0.045441862022585156
GLYLGSIMK	9	Unmodified	_GLYLGSIMK_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2752990722656	2	491.275521	980.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.027	1	41.027	40.527	41.527	0								0	0	0	0.040851	1	16291	16291		90.37	0	1		+		13422	15633	8751	8784	13618	13618					0.045441862022585156
GLYSRIVT	8	Unmodified	_GLYSRIVT_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-4|SETD4	REV__nc|ENSG00000185917|Q9NVD3-4|SETD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.7634582519531	2	454.763635	907.512717	-0.57222	-0.00026022	0.24551	0.00011165	-0.32671	-0.00014857	454.76367247879097	28.521	0.20651	28.521	28.396	28.603	0					15	5	4	0	0	0	0.60719	1	10076	10076		47.916	0	1	645990	+		13423	17053	8752	8785	13619	13619					0.055260887600866226
GMAAWCISIV	10	Unmodified	_GMAAWCISIV_					0	0	0			REV__ENSG00000187066|ENST00000530719|TMEM262	REV__ENSG00000187066|ENST00000530719|TMEM262	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7598876953125	2	525.759181	1049.50381	0.52742	0.00027729	0.425	0.00022345	0.95241	0.00050074	525.7595987821248	19.448	0.2778	19.448	19.382	19.66	0					15	8	2	0	0	0	0.40673	1	5278	5278		55.504	4.3115	1	192080	+		13424	17108	8753	8786	13620	13620					-0.018963441922551283
GMANSSGIMLK	11	Unmodified	_GMANSSGIMLK_					0	0	0			REV__MBD5|p.R200Dfs*69|1|0.2|ENSG00000204406|chr2:148468537-148468537|C/-|frameshift_variant	REV__MBD5|p.R200Dfs*69|1|0.2|ENSG00000204406|chr2:148468537-148468537|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7800903320312	2	554.778102	1107.54165	3.5827	0.0019876	0.24761	0.00013737	3.8303	0.002125	554.7786247511951	48.109	0.36279	48.109	47.992	48.355	0					50	18	4	0	0	0	0.36734	1	19126	19126		55.084	2.1472	1	983790	+		13425	17483	8754	8787	13621	13621					-0.007818779974286372
GMAWPPGRV	9	Unmodified	_GMAWPPGRV_					0	0	0		ENST00000325327.3_1_19:2430242-2430563:-|nuORF	ENST00000325327.3_1_19:2430242-2430563:-|nuORF	ENST00000325327.3_1_19:2430242-2430563:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7508239746094	2	485.750005	969.485456	-0.2468	-0.00011988	2.6111	0.0012683	2.3643	0.0011485	485.75134561480655	19.785	0.14552	19.785	19.743	19.889	0					5	3	2	0	0	0	0.43426	1	5453	5453		38.806	0.052534	1	167010			13426	8646	8755	8788	13622	13622					-0.0005071805193210821
GMEKMVDRA	9	Unmodified	_GMEKMVDRA_					0	0	0			REV__HPRT1|p.R48H|1|0.5|ENSG00000165704|chrX:134475189-134475189|G/A|missense_variant	REV__HPRT1|p.R48H|1|0.5|ENSG00000165704|chrX:134475189-134475189|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7511596679688	2	518.749344	1035.48414	3.3487	0.0017371	0.055577	2.883E-05	3.4043	0.001766	518.7493483363912	19.071	1.5439	19.071	18.784	20.328	0					100	31	6	0	0	0	0.12239	2	5986	5814;5986		74.255	74.255	1	20356000	+		13427	16064	8756	8789	13623;13624	13624					-0.03218720203017256
GMGGAAAN	8	Unmodified	_GMGGAAAN_					0	0	0			REV__ENST00000223215.8_1_7:130132090-130132144:+|nuORF	REV__ENST00000223215.8_1_7:130132090-130132144:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.6420593261719	2	324.642131	647.269709	0.63845	0.00020727	-1.8917	-0.00061411	-1.2532	-0.00040684	324.64206115417585	44.247	0.1859	44.247	44.175	44.361	0					18	11	2	0	0	0	0.79293	1	16601	16601		15.636	0.97212	1	50726	+		13428	17896	8757	8790	13625	13625					-0.06803479236600651
GMGGLVVMVL	10	Unmodified	_GMGGLVVMVL_					0	0	0			REV__tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	REV__tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2701110839844	2	488.271924	974.529295	-0.077615	-3.7897E-05	-1.1899	-0.00058098	-1.2675	-0.00061888	488.27139923319726	32.607	0.17256	32.607	32.537	32.71	0					12	7	2	0	0	0	0.59237	1	10581	10581		35.201	1.6851	1	104320	+		13429	22213	8758	8791	13626	13626					0.04101130330184333
GMGLFIPWLW	10	Unmodified	_GMGLFIPWLW_					0	0	0			REV__ATP2B1|p.S1044P|1|0.27|ENSG00000070961|chr12:89601364-89601364|A/G|missense_variant	REV__ATP2B1|p.S1044P|1|0.27|ENSG00000070961|chr12:89601364-89601364|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.2158508300781	3	407.215934	1218.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.92	1	18.92	18.42	19.42	0								0	0	0	0.37129	1	5035	5035		39.253	5.3312	1		+		13430	12256	8759	8792	13627	13627					0.025404408816257273
GMGLTRTR	8	Unmodified	_GMGLTRTR_					0	0	0		chr2:127388998-127389111|452|13.27|0.0|20.34|+|2|MAP3K2-DT,MAP3K2-DT|1	chr2:127388998-127389111|452|13.27|0.0|20.34|+|2|MAP3K2-DT,MAP3K2-DT|1	chr2:127388998-127389111|452|13.27|0.0|20.34|+|2|MAP3K2-DT,MAP3K2-DT|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2470397949219	2	446.245086	890.47562	0.60229	0.00026877	2.4137	0.0010771	3.016	0.0013459	446.2462360041052	19.006	0.21348	19.006	18.924	19.138	0					11	5	3	0	0	0	0.68754	1	5674	5674		35.201	1.6851	1	605180			13431	528	8760	8793	13628	13628					0.026000939426808145
GMGPGVKK	8	Unmodified	_GMGPGVKK_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	387.22052001953125	2	387.220549	772.426544	-0.021713	-8.4079E-06	-0.18629	-7.2137E-05	-0.20801	-8.0545E-05	387.22053055737723	17.796	0.12114	17.796	17.72	17.841	0					6	3	2	0	0	0	0.68754	1	4320	4320		35.201	6.9464	1	172210	+		13432	19412	8761	8794	13629	13629					0.03122805653731575
GMGPGVKK	8	Unmodified	_GMGPGVKK_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.2206115722656	2	387.220549	772.426544	-0.016718	-6.4734E-06	0.27635	0.00010701	0.25963	0.00010053	387.22064524199754	18.123	0.14568	18.123	18.025	18.171	0					5	3	2	0	0	0	0.6282	1	5254	5254		44.531	2.0566	1	539320	+		13433	19412	8761	8794	13630	13630					0.03122805653731575
GMGPGVKK	8	Unmodified	_GMGPGVKK_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	387.2202453613281	2	387.220549	772.426544	-0.77437	-0.00029985	-0.83255	-0.00032238	-1.6069	-0.00062223	387.22052563645445	17.823	0.15438	17.823	17.715	17.869	0					6	4	2	0	0	0	0.74117	1	4554	4554		28.254	6.5519	1	66507	+		13434	19412	8761	8794	13631	13631					0.03122805653731575
GMGPGVKK	8	Unmodified	_GMGPGVKK_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.219970703125	2	387.220549	772.426544	-2.1811	-0.00084457	1.3693	0.00053021	-0.81185	-0.00031436	387.22101933873455	17.888	0.18693	17.888	17.768	17.955	0					6	4	2	0	0	0	0.55361	1	4552	4552		54.765	0	1	102030	+		13435	19412	8761	8794	13632	13632					0.03122805653731575
GMIFPKGVL	9	Unmodified	_GMIFPKGVL_					0	0	0			REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2821350097656	2	481.280606	960.546659	0.5336	0.00025681	0.58128	0.00027976	1.1149	0.00053657	481.2807275406296	35.796	0.24067	35.796	35.751	35.991	0					11	6	3	0	0	0	0.32741	1	13464	13464		47.916	5.5195	1	131470	+		13436	21792	8762	8795	13633	13633					0.06480793927505601
GMLATSSN	8	Unmodified	_GMLATSSN_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENSG00000198176|ENST00000375370|TFDP1	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	390.6814270019531	2	390.681453	779.348354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.462	1	48.462	47.962	48.962	0								0	0	0	1.7419	1	19260	19260		20.482	1.1219	1				13437	10569	8763	8796	13634	13634					-0.05014671722176445
GMLKNLKEPP	10	Unmodified	_GMLKNLKEPP_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-2|FSTL4;FSTL4|p.G790Vfs*6|1|0.38|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.21435546875	3	376.214482	1125.62162	0.23901	8.992E-05	-0.52589	-0.00019785	-0.28688	-0.00010793	376.2143252750274	17.174	0.36456	17.174	17.013	17.377	0					10	7	2	0	0	0	0.7005	1	5017	5017		27.047	6.1004	1	274560			13438	1259	8764	8797	13635	13635					0.0638293166805397
GMLMRTAQ	8	Oxidation (M)	_GMLM(Oxidation (M))RTAQ_		GM(0.001)LM(0.999)RTAQ		GM(-31)LM(31)RTAQ	0	0	1			REV__sp|P16782|RIR1_HCMVARibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=RIR1PE=3SV=1	REV__sp|P16782|RIR1_HCMVARibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=RIR1PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2287292480469	2	462.225505	922.436457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.441	1	20.441	19.941	20.941	0								0	0	0	1.7419	1	5709	5709		50.025	17.212	2		+		13439	21583	8765	8798	13636	13636		781			-0.027863744031947135
GMLMVLLLT	9	Oxidation (M)	_GMLM(Oxidation (M))VLLLT_		GM(0.002)LM(0.998)VLLLT		GM(-27)LM(27)VLLLT	0	0	1			REV__LRRTM4|p.T28M|1|0.3|ENSG00000176204|chr2:77519786-77519786|G/A|missense_variant	REV__LRRTM4|p.T28M|1|0.3|ENSG00000176204|chr2:77519786-77519786|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.1939697265625	3	336.19403	1005.56026	0.53513	0.00017991	0.22397	7.5296E-05	0.75909	0.0002552	336.19395670260946	22.986	2.3477	22.986	20.747	23.095	0					77	47	3	0	0	0	0.41113	1	6930	6930		40.778	6.6056	2	1115800	+		13440	20850	8766	8799	13637	13637		746			0.05770283644437768
GMLNLNILK	9	Unmodified	_GMLNLNILK_					0	0	0			REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.20513916015625	3	339.203805	1014.58959	0.51253	0.00017385	4.1728	0.0014154	4.6854	0.0015893	339.20488787150094	14.492	0.24993	14.492	14.366	14.616	0					12	6	2	0	0	0	0.41113	1	3531	3531		40.778	5.6261	1	938320	+		13441	17987	8767	8800	13638	13638					0.08287563984902135
GMLNLNILK	9	Unmodified	_GMLNLNILK_					0	0	0			REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.20501708984375	3	339.203805	1014.58959	3.0196	0.0010243	1.715	0.00058175	4.7347	0.001606	339.2040765085167	14.432	0.47159	14.432	14.222	14.694	0					19	9	4	0	0	0	0.42902	1	3576	3576		39.253	0	1	1891800	+		13442	17987	8767	8800	13639	13639					0.08287563984902135
GMLTGCSPAQR	11	Unmodified	_GMLTGCSPAQR_					0	0	0		ENST00000374879.4_1_9:103235493-103235730:+|nuORF	ENST00000374879.4_1_9:103235493-103235730:+|nuORF	ENST00000374879.4_1_9:103235493-103235730:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7666015625	2	560.765526	1119.5165	1.81	0.001015	-1.1691	-0.00065559	0.64088	0.00035938	560.7650138763197	26.946	3.2083	26.946	26.739	29.947	0					143	64	6	0	0	0	0.51875	1	9911	9911		42.864	0.52619	1	15901000			13443	9020	8768	8801	13640	13640					-0.03847932800022136
GMMIQGHTTI	10	Unmodified	_GMMIQGHTTI_					0	0	0		ENST00000504445.1_1_4:47514609-47514774:+|nuORF	ENST00000504445.1_1_4:47514609-47514774:+|nuORF	ENST00000504445.1_1_4:47514609-47514774:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7647705078125	2	544.764994	1087.51544	0.32711	0.0001782	-0.78573	-0.00042804	-0.45862	-0.00024984	544.7645310844881	23.238	0.11648	23.238	23.179	23.295	0					6	2	3	0	0	0	0.079553	1	7992	7992		99.375	11.679	1	628790			13444	10172	8769	8802	13641	13641					-0.024821471689165264
GMMLSFIL	8	Unmodified	_GMMLSFIL_					0	0	0			REV__MANEA|p.F18L|1|0.2|ENSG00000172469|chr6:95586493-95586493|T/G|missense_variant	REV__MANEA|p.F18L|1|0.2|ENSG00000172469|chr6:95586493-95586493|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.24188232421875	2	456.240092	910.465632	2.4919	0.0011369	0.60977	0.0002782	3.1016	0.0014151	456.2405210902648	28.701	2.4487	28.701	27.976	30.425	0					116	49	4	0	0	0	0.61433	1	10385	10385		46.766	0	1	2595200	+		13445	20860	8770	8803	13642	13642					0.006817698930831284
GMMVLSLGIIL	11	Unmodified	_GMMVLSLGIIL_					0	0	0		ENST00000529906.5_1_11:59944867-59947426:-|nuORF;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A;MS4A6A|p.T185Sfs*29|1|0.24|ENSG00000110077|chr11:60173125-60173126|GT/-|frameshift_variant;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;ENST00000526677.1_1_11:59947162-59947516:-|nuORF;nc|ENSG00000110077|Q9H2W1-4|MS4A6A	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8358764648438	2	573.834888	1145.65522	0.15901	9.1247E-05	1.287	0.00073852	1.446	0.00082976	573.835586974326	37.33	0.55386	37.33	37.171	37.725	0					25	11	3	0	0	0	0.65797	1	14552	14552		15.642	0	1	216370			13446	2609	8771	8804	13643	13643					0.08822217115630338
GMNSWNEED	9	Unmodified	_GMNSWNEED_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;REV1|p.M392*|1|0.28|ENSG00000135945|chr2:99438640-99438640|T/-|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-3|REV1;REV1|p.M392Nfs*12|1|0.38|ENSG00000135945|chr2:99438639-99438640|-/T|frameshift_variant	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.1981201171875	2	541.198196	1080.38184	2.0661	0.0011182	-2.6901	-0.0014559	-0.62402	-0.00033772	541.197226507011	38.929	0.38914	38.929	38.824	39.214	0					15	8	4	0	0	0	0.50858	1	15356	15356		31.53	3.6476	1	557400			13447	4039	8772	8805	13644	13644					-0.15513714740927753
GMPKSYLPQ	9	Unmodified	_GMPKSYLPQ_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7640686035156	2	510.762778	1019.511	3.0678	0.0015669	-0.28565	-0.0001459	2.7821	0.001421	510.76259481917265	12.173	0.25554	12.173	12.04	12.296	0					16	7	3	0	0	0	0.1115	1	2539	2539		76.774	2.7994	1	327750			13448	3915	8773	8806	13645	13645					0.002027116798217321
GMPVSPAP	8	Unmodified	_GMPVSPAP_					0	0	0		ENST00000476881.2_1_7:100174203-100174533:-|nuORF;ENST00000485071.2_1_7:100173012-100174533:-|nuORF	ENST00000476881.2_1_7:100174203-100174533:-|nuORF	ENST00000476881.2_1_7:100174203-100174533:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.1910095214844	2	378.191457	754.368361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.99	1	33.99	33.49	34.49	0								0	0	0	1.7419	1	11092	11092		37.028	7.1869	1				13449	9913	8774	8807	13646	13646					-0.018648759915549817
GMQKGGFDPES	11	Unmodified	_GMQKGGFDPES_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.7532958984375	2	576.753138	1151.49172	-0.080228	-4.6272E-05	0.19165	0.00011053	0.11142	6.4262E-05	576.7533575412373	35.747	1.4163	35.747	34.641	36.057	0					60	37	3	0	0	0	0.70609	1	13337	13337		27.047	0	1	1025800	+		13450	13867	8775	8808	13647	13647					-0.07796289401721879
GMQRHQET	8	Unmodified	_GMQRHQET_					0	0	0			REV__ENST00000490362.1_1_2:217498183-217525611:+|nuORF	REV__ENST00000490362.1_1_2:217498183-217525611:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7272644042969	2	493.727258	985.439962	-0.069007	-3.4071E-05	-0.14056	-6.9398E-05	-0.20957	-0.00010347	493.72660419651106	17.009	0.09466	17.009	16.978	17.073	0					5	3	2	0	0	0	0.7887	1	3982	3982		12.959	0	1	65828	+		13451	14111	8776	8809	13648	13648					-0.05333988304982995
GMSSVFFNK	9	Unmodified	_GMSSVFFNK_					0	0	0		ENST00000467370.5_1_3:125824416-125834086:-|nuORF;nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1	ENST00000467370.5_1_3:125824416-125834086:-|nuORF	ENST00000467370.5_1_3:125824416-125834086:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7474670410156	2	508.747127	1015.4797	2.991	0.0015217	-3.0032	-0.0015279	-0.012219	-6.2163E-06	508.74605569185326	38.638	0.26409	38.638	38.56	38.824	0					10	5	3	0	0	0	0.19605	1	15214	15214		62.107	14.192	1	120580			13452	4650	8777	8810	13649	13649					-0.027418613542636194
GMSWVDGKK	9	Unmodified	_GMSWVDGKK_					0	0	0			REV__ENSG00000162526|ENST00000373534|TSSK3	REV__ENSG00000162526|ENST00000373534|TSSK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2537536621094	2	504.252577	1006.4906	1.03	0.0005194	1.1576	0.00058372	2.1876	0.0011031	504.2532546801057	16.721	0.98783	16.721	16.613	17.6	0					57	20	5	0	0	0	0.03984	1	4819	4819		99.375	99.375	1	109160000	+		13453	15819	8778	8811	13650	13650					-0.012384589799808055
GMTGRPTRTL	10	Unmodified	_GMTGRPTRTL_					0	0	0		nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000503467.1_1_4:17587853-17609209:+|nuORF	nc|ENSG00000002549|P28838-2|LAP3	nc|ENSG00000002549|P28838-2|LAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.86614990234375	3	363.865964	1088.57606	1.0927	0.00039761	-0.40074	-0.00014581	0.692	0.00025179	363.86580381183023	18.661	0.6897	18.661	18.555	19.245	0					31	14	3	0	0	0	0.44292	1	5638	5638		51.528	1.9917	1	2335700			13454	927	8779	8812	13651	13651					0.035317062056719806
GMVEILGINE	10	Unmodified	_GMVEILGINE_					0	0	0			REV__tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	REV__tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7814331054688	2	537.778625	1073.5427	1.3372	0.0007191	4.2995	0.0023122	5.6366	0.0030313	537.7806732146319	19.834	0.11892	19.834	19.775	19.894	0					4	2	2	0	0	0	0.41335	1	6351	6351		54.776	1.8396	1	86624	+		13455	22045	8780	8813	13652	13652					0.008866596431289508
GMVRTFQGP	9	Unmodified	_GMVRTFQGP_					0	0	0			REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7534484863281	2	496.752744	991.490935	-0.32993	-0.00016389	1.3635	0.00067731	1.0335	0.00051341	496.75350173660473	15.998	0.26241	15.998	15.886	16.149	0					15	6	4	0	0	0	0.41113	1	4244	4244		40.778	5.1599	1	1094600	+		13456	12934	8781	8814	13653	13653					-0.00515039260130834
GMWSWAVVT	9	Unmodified	_GMWSWAVVT_					0	0	0		ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.751220703125	2	518.74967	1035.48479	3.3487	0.0017371	-0.57279	-0.00029713	2.7759	0.00144	518.7493483363912	19.071	1.5439	19.071	18.784	20.328	0					100	31	6	0	0	0	0.32741	1	6229	6229		47.916	47.916	1	20356000			13457	4992	8782	8815	13654	13654					-0.03153557491646097
GNAMFVKEQ	9	Unmodified	_GNAMFVKEQ_					0	0	0		ENSG00000196136|ENST00000393078|SERPINA3;nc|ENSG00000196136|P01011-2|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2512817382812	2	512.250034	1022.48552	1.4217	0.00072826	0.86501	0.0004431	2.2867	0.0011714	512.2504763114201	13.809	0.16509	13.809	13.749	13.914	0					8	3	3	0	0	0	0.24334	1	3304	3304		56.434	5.0983	1	554790			13458	7326	8783	8816	13655	13655					-0.024827628425896364
GNDLHVGSE	9	Unmodified	_GNDLHVGSE_					0	0	0		PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;PLXND1|p.S1268Qfs*34|1|0.3|ENSG00000004399|chr3:129569907-129569908|-/C|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2120056152344	2	464.211963	926.409374	0.69246	0.00032145	-1.0612	-0.00049264	-0.36879	-0.0001712	464.21174631534353	29.471	0.44572	29.471	29.321	29.767	0					23	9	3	0	0	0	0.38666	1	10926	10926		42.864	1.4377	1	704900			13459	938	8784	8817	13656	13656					-0.05677443418369421
GNGLSELLQ	9	Unmodified	_GNGLSELLQ_					0	0	0			REV__ENSG00000157764|ENST00000646891|BRAF	REV__ENSG00000157764|ENST00000646891|BRAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7477111816406	2	465.748182	929.481811	-0.13675	-6.3692E-05	0.29815	0.00013886	0.1614	7.5171E-05	465.74807842677563	37.502	0.14405	37.502	37.466	37.61	0					8	4	2	0	0	0	0.56424	1	14684	14684		25.574	0	1	66458	+		13460	15667	8785	8818	13657	13657					0.014248906552097651
GNGQPIILL	9	Unmodified	_GNGQPIILL_					0	0	0		tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.77862548828125	2	462.779285	923.544017	-0.71418	-0.00033051	-0.095348	-4.4125E-05	-0.80953	-0.00037463	462.7792345989621	42.684	0.15267	42.684	42.606	42.759	0					12	7	2	0	0	0	0.5654	1	16140	16140		25.45	2.4077	1	63608			13461	23044	8786	8819	13658	13658					0.0791866179419003
GNGVEILHVL	10	Unmodified	_GNGVEILHVL_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.80419921875	2	525.800749	1049.58694	-1.2343	-0.00064902	4.2554	0.0022375	3.0211	0.0015885	525.8034431701242	13.069	0.094864	13.069	13.002	13.097	0					7	4	2	0	0	0	0.72334	1	2604	2604		18.324	4.5491	1	103280	+		13462	17314	8787	8820	13659	13659					0.06413431851615314
GNHSKTYSMEE	11	Unmodified	_GNHSKTYSMEE_					0	0	0		LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant;nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	641.772216796875	2	641.772059	1281.52957	0.64413	0.00041339	-0.62709	-0.00040245	0.01704	1.0936E-05	641.7715997402865	12.469	0.096219	12.469	12.406	12.502	0					8	3	3	0	0	0	0.72685	1	2635	2635		35.152	18.435	1	995060			13463	3855	8788	8821	13660	13660					-0.0999382320692348
GNKLVNLAV	9	Unmodified	_GNKLVNLAV_					0	0	0			REV__ENST00000529206.1_1_14:95595738-95599795:-|nuORF	REV__ENST00000529206.1_1_14:95595738-95599795:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.284912109375	2	464.284734	926.554916	0.091045	4.2271E-05	-0.26923	-0.000125	-0.17818	-8.2728E-05	464.2846886701321	34.859	0.28959	34.859	34.79	35.079	0					19	12	2	0	0	0	0.25109	1	11411	11411		55.504	0	1	239960	+		13464	12705	8789	8822	13661	13661					0.08870064168456793
GNKSTLNLI	9	Unmodified	_GNKSTLNLI_					0	0	0		ENST00000475896.5_1_3:100581631-100581769:-|nuORF	ENST00000475896.5_1_3:100581631-100581769:-|nuORF	ENST00000475896.5_1_3:100581631-100581769:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2788391113281	2	480.279649	958.544745	-0.26305	-0.00012634	-0.39901	-0.00019164	-0.66206	-0.00031798	480.2795776538883	14.584	0.13882	14.584	14.503	14.642	0					12	6	2	0	0	0	0.54267	1	3163	3163		27.882	2.3082	1	113270			13465	9903	8790	8823	13662	13662					0.06381456443239131
GNKTTIRMT	9	Unmodified	_GNKTTIRMT_					0	0	0		ENSG00000115525|ENST00000638572|ST3GAL5;nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5	ENSG00000115525|ENST00000638572|ST3GAL5	ENSG00000115525|ENST00000638572|ST3GAL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.27716064453125	2	511.276583	1020.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.506	1	11.506	11.006	12.006	0								0	0	0	0.36646	1	2231	2231		9.1829	0	1				13466	2917	8791	8824	13663	13663					0.02916614940056661
GNLEGFVSGA	10	Unmodified	_GNLEGFVSGA_					0	0	0		tr|U7SJJ7|U7SJJ7_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02188PE=4SV=1	tr|U7SJJ7|U7SJJ7_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02188PE=4SV=1	tr|U7SJJ7|U7SJJ7_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02188PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7337646484375	2	475.732532	949.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.448	1	23.448	22.948	23.948	0								0	0	0	0.33107	1	8080	8080		45.972	5.1941	1				13467	22614	8792	8825	13664	13664					-0.026236823788963193
GNSFAAAYQN	10	Unmodified	_GNSFAAAYQN_					0	0	0			REV__SALL1|p.L1241F|1|0.19|ENSG00000103449|chr16:51137366-51137366|G/A|missense_variant	REV__SALL1|p.L1241F|1|0.19|ENSG00000103449|chr16:51137366-51137366|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.735107421875	2	521.733063	1041.45157	3.3937	0.0017706	-0.19269	-0.00010053	3.201	0.0016701	521.733224775568	17.866	0.30897	17.866	17.751	18.06	0					17	6	5	0	0	0	0.24256	1	5241	5241		74.255	5.4682	1	1318300	+		13468	21486	8793	8826	13665	13665					-0.06749468010002602
GNSGHFTIIY	10	Unmodified	_GNSGHFTIIY_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;CTSC|p.V126Gfs*3|1|0.2|ENSG00000109861|chr11:88312496-88312497|-/C|frameshift_variant;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;CTSC|p.F302Lfs*27|1|0.1|ENSG00000109861|chr11:88294495-88294496|-/A|frameshift_variant;CTSC|p.N427Kfs*9|1|0.09|ENSG00000109861|chr11:88294117-88294118|-/T|frameshift_variant;ENSG00000109861|ENST00000227266|CTSC	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7747802734375	2	554.774731	1107.53491	1.0015	0.00055559	-0.52194	-0.00028956	0.47953	0.00026603	554.7741325693527	29.956	0.11781	29.956	29.896	30.014	0					4	2	2	0	0	0	0.4758	1	11049	11049		47.96	7.9014	1	141070			13469	713	8794	8827	13666	13666					-0.014557315621232192
GNSKTAKCPI	10	Unmodified	_GNSKTAKCPI_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7714538574219	2	509.771134	1017.52771	1.0158	0.00051781	3.1145	0.0015877	4.1302	0.0021055	509.77258014363724	22.608	0.20162	22.608	22.501	22.703	0					10	6	2	0	0	0	0.38179	1	6410	6410		64.207	16.292	1	48455	+		13470	22199	8795	8828	13667	13667					0.019652125657898978
GNSQRKRK	8	Unmodified	_GNSQRKRK_					0	0	0		ENST00000533996.5_1_17:70072759-70080101:-|nuORF;ENST00000434703.5_1_17:70072759-70080101:-|nuORF	ENST00000533996.5_1_17:70072759-70080101:-|nuORF	ENST00000533996.5_1_17:70072759-70080101:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7846984863281	2	487.286131	972.55771	0.81063	0.00039501	1.1314	0.0005513	1.942	0.00094631	487.28692511386527	14.5	0.52276	14.5	14.188	14.711	0					25	10	4	0	0	0	0.58686	1	3512	3512		51.193	3.5354	1	1235500			13471	9518	8796	8829	13668	13668					0.07033332345997678
GNYNDFGNY	9	Unmodified	_GNYNDFGNY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3	ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2100219726562	2	532.209421	1062.40429	1.7143	0.00091237	-0.85538	-0.00045524	0.85892	0.00045712	532.2088917487614	39.673	0.261	39.673	39.571	39.832	0					18	9	3	0	0	0	0.056004	1	15617	15617		93.143	45.486	1	154930			13472	3273;6211	8797	8830	13669	13669					-0.12441747280990967
GNYPDLVKK	9	Unmodified	_GNYPDLVKK_					0	0	0		tr|U7SFN1|U7SFN1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02312PE=4SV=1	tr|U7SFN1|U7SFN1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02312PE=4SV=1	tr|U7SFN1|U7SFN1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02312PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2855224609375	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.894	1	14.894	14.394	15.394	0								0	0	0	0.27025	1	3808	3808		40.778	1.5253	1				13473	22570	8798	8831	13670	13670					0.04541742960282136
GPAPPTLPRGL	11	Unmodified	_GPAPPTLPRGL_					0	0	0		ENST00000548971.5_1_12:53896913-53899929:+|nuORF	ENST00000548971.5_1_12:53896913-53899929:+|nuORF	ENST00000548971.5_1_12:53896913-53899929:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.316650390625	2	538.316566	1074.61858	2.0443	0.0011005	-2.0353	-0.0010956	0.0090345	4.8634E-06	538.3155688059338	25.667	0.17197	25.667	25.584	25.756	0					10	4	3	0	0	0	0.54316	1	8809	8809		18.262	0	1	546030			13474	10604	8799	8832	13671	13671					0.08425424605570697
GPARQKLSNA	10	Unmodified	_GPARQKLSNA_					0	0	0			REV__ENST00000487537.2_1_19:40747718-40761168:-|nuORF	REV__ENST00000487537.2_1_19:40747718-40761168:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.8647766113281	3	347.86484	1040.57269	0.51445	0.00017896	-4.1361	-0.0014388	-3.6216	-0.0012598	347.86461314531385	17.302	0.20568	17.302	17.183	17.388	0					12	4	4	0	0	0	0.65051	1	5100	5100		28.081	0.19925	1	197360	+		13475	13760	8800	8833	13672	13672					0.054027794233206805
GPCGGPSGG	9	Unmodified	_GPCGGPSGG_					0	0	0			REV__NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	REV__NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.6404113769531	2	344.639588	687.264624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.823	1	43.823	43.323	44.323	0								0	0	0	0.39567	1	14294	14294		12.207	2.7363	1		+		13476	13197	8801	8834	13673	13673					-0.09151783099207478
GPDGPQGAI	9	Unmodified	_GPDGPQGAI_					0	0	0			REV__ENSG00000197565|ENST00000334504|COL4A6	REV__ENSG00000197565|ENST00000334504|COL4A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.2008361816406	2	406.200867	810.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.388	1	22.388	21.888	22.888	0								0	0	0	0.15451	1	7439	7439		58.782	10.866	1		+		13477	17345	8802	8835	13674	13674					-0.025596230961355104
GPDKLFDSHK	10	Unmodified	_GPDKLFDSHK_					0	0	0		ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.8631896972656	3	381.864617	1142.57202	-0.52487	-0.00020043	-3.394	-0.0012961	-3.9189	-0.0014965	381.8633470813883	14.163	0.11922	14.163	14.103	14.222	0					4	2	2	0	0	0	0.66699	1	3476	3476		26.063	0.48933	1	100230			13478	4504	8803	8836	13675	13675					0.006439399836153825
GPEGLLLPSF	10	Unmodified	_GPEGLLLPSF_					0	0	0		ENST00000455833.6_2_1:19234750-19235035:-|nuORF	ENST00000455833.6_2_1:19234750-19235035:-|nuORF	ENST00000455833.6_2_1:19234750-19235035:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.284912109375	2	515.2844	1028.55425	1.4069	0.00072495	-0.90272	-0.00046516	0.50417	0.00025979	515.284293613614	43.107	0.14517	43.107	43.023	43.169	0					10	7	2	0	0	0	0.60076	1	16886	16886		34.173	0	1	80377			13479	9681	8804	8837	13676	13676					0.04111224728740126
GPEKLSEKFQ	10	Unmodified	_GPEKLSEKFQ_					0	0	0		EFNA1|p.R110C|1|0.18|ENSG00000169242|chr1:155131574-155131574|C/T|missense_variant;nc|ENSG00000169242|P20827-2|EFNA1;ENST00000474413.5_1_1:155102304-155106540:+|nuORF;ENST00000497282.1_1_1:155103761-155106540:+|nuORF;ENSG00000169242|ENST00000368407|EFNA1;ENST00000469878.5_1_1:155100369-155106166:+|nuORF	EFNA1|p.R110C|1|0.18|ENSG00000169242|chr1:155131574-155131574|C/T|missense_variant	EFNA1|p.R110C|1|0.18|ENSG00000169242|chr1:155131574-155131574|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	388.2086486816406	3	388.208273	1161.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.427	1	15.427	14.927	15.927	0								0	0	0	0.39264	1	3514	3514		32.751	4.1738	1				13480	886	8805	8838	13677	13677					0.028650932978507626
GPEVHWNI	8	Unmodified	_GPEVHWNI_					0	0	0		ENST00000497027.5_1_3:55514830-55515374:-|nuORF	ENST00000497027.5_1_3:55514830-55515374:-|nuORF	ENST00000497027.5_1_3:55514830-55515374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2375183105469	2	476.237784	950.461016	-0.058269	-2.775E-05	0.20284	9.6598E-05	0.14457	6.8848E-05	476.23796727781394	36.732	0.36436	36.732	36.602	36.967	0					34	16	3	0	0	0	0.70055	1	13122	13122		33.516	0	1	239580			13481	10121	8806	8839	13678	13678					-0.01619654933813308
GPFFVLCPDHH	11	Unmodified	_GPFFVLCPDHH_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	634.7968139648438	2	634.797683	1267.58081	-0.088346	-5.6082E-05	-1.1045	-0.00070114	-1.1929	-0.00075722	634.7969264949261	21.297	0.31472	21.297	21.19	21.505	0					14	6	4	0	0	0	0.52516	1	6926	6926		42.396	3.59	1	428000			13482	3403	8807	8840	13679	13679					-0.042274096515484416
GPFLKAAR	8	Unmodified	_GPFLKAAR_					0	0	0			REV__RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;REV__RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant	REV__RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	287.17779541015625	3	287.176467	858.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.224	1	47.224	46.724	47.724	0								0	0	0	1.7419	1	17354	17354		23.042	2.0956	1		+		13483	17019;21459	8808	8841	13680	13680					0.07265829688128633
GPFSLLPKY	9	Unmodified	_GPFSLLPKY_					0	0	0		CLVS1|p.V4F|1|0.29|ENSG00000177182|chr8:61299837-61299837|G/T|missense_variant	CLVS1|p.V4F|1|0.29|ENSG00000177182|chr8:61299837-61299837|G/T|missense_variant	CLVS1|p.V4F|1|0.29|ENSG00000177182|chr8:61299837-61299837|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.28759765625	2	511.289485	1020.56442	-1.7591	-0.00089939	-2.2435	-0.0011471	-4.0026	-0.0020465	511.28861114956896	36.101	0.26466	36.101	36.031	36.295	0					13	9	2	0	0	0	0.50858	1	12907	12907		11.511	0	1	173940			13484	564	8809	8842	13681	13681					0.054958324539938985
GPFSYPGVFP	10	Unmodified	_GPFSYPGVFP_					0	0	0		ENST00000495535.1_1_7:150066106-150067109:+|nuORF	ENST00000495535.1_1_7:150066106-150067109:+|nuORF	ENST00000495535.1_1_7:150066106-150067109:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.262939453125	2	534.263468	1066.51238	0.19373	0.0001035	-1.5358	-0.00082052	-1.3421	-0.00071702	534.2631518507068	32.561	0.15295	32.561	32.48	32.632	0					9	6	2	0	0	0	0.61887	1	10871	10871		31.955	1.4512	1	38227			13485	10108	8810	8843	13682	13682					-0.01821330959774059
GPGRAGVT	8	Unmodified	_GPGRAGVT_					0	0	0		ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENST00000494373.1_1_2:54014190-54014463:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.6982421875	2	357.698295	713.382037	1.4334	0.00051274	-1.6282	-0.00058239	-0.19472	-6.9652E-05	357.69763671108734	11.47	0.14693	11.47	11.37	11.517	0					7	4	2	0	0	0	0.4434	1	2333	2333		65.897	5.6035	1	99312			13486	10097	8811	8844	13683	13683					0.013881178318911225
GPGSLGQPK	9	Unmodified	_GPGSLGQPK_					0	0	0			REV__ENST00000361725.4_1_2:172953356-172953578:+|nuORF	REV__ENST00000361725.4_1_2:172953356-172953578:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.73223876953125	2	420.732335	839.450116	-0.091636	-3.8554E-05	-0.27238	-0.0001146	-0.36402	-0.00015316	420.7323001772496	15.156	0.21851	15.156	14.994	15.212	0					6	4	2	0	0	0	0.17854	1	4099	4099		64.207	14.183	1	102200	+		13487	18572	8812	8845	13684	13684					0.02396942691905224
GPKGNSGEPGA	11	Unmodified	_GPKGNSGEPGA_					0	0	0		COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant	COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7308654785156	2	485.733063	969.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.761	1	13.761	13.261	14.261	0								0	0	0	0.32997	1	3205	3205		47.96	0.30219	1				13488	599	8813	8846	13685	13685					-0.034374680099972466
GPKGPPEPPG	10	Unmodified	_GPKGPPEPPG_					0	0	0			REV__COL9A2|p.G152E|1|0.23|ENSG00000049089|chr1:40311678-40311678|C/T|missense_variant	REV__COL9A2|p.G152E|1|0.23|ENSG00000049089|chr1:40311678-40311678|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7472229003906	2	466.745442	931.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.64	1	22.64	22.14	23.14	0								0	0	0	0.29716	1	6779	6779		51.335	5.3835	1		+		13489	12567	8814	8847	13686	13686					0.007852118633763894
GPKPVRQTG	9	Unmodified	_GPKPVRQTG_					0	0	0			REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.2722473144531	2	470.272158	938.529764	-1.1493	-0.00054051	0.72636	0.00034159	-0.42298	-0.00019892	470.2724901260432	50.79	0.26466	50.79	50.723	50.987	0					25	16	2	0	0	0	0.55379	1	15237	15237		26.693	0	1	88845	+		13490	16297	8815	8848	13687	13687					0.058040093658974
GPKPVRQTG	9	Unmodified	_GPKPVRQTG_					0	0	0			REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.27178955078125	2	470.272158	938.529764	-0.68469	-0.00032199	0.15251	7.1721E-05	-0.53218	-0.00025027	470.2721468993377	50.845	0.19213	50.845	50.765	50.957	0					22	12	3	0	0	0	0.56424	1	15766	15766		25.574	2.5316	1	100290	+		13491	16297	8815	8848	13688	13688					0.058040093658974
GPKPVTRYA	9	Unmodified	_GPKPVTRYA_					0	0	0			REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.1903381347656	3	330.190665	987.550165	0.54553	0.00018013	-0.91318	-0.00030152	-0.36765	-0.00012139	330.1905185449788	22.022	0.80872	22.022	21.592	22.4	0					27	16	2	0	0	0	0.58342	1	7516	7516		23.523	0.94304	1	163860	+		13492	12943	8816	8849	13689	13689					0.0558918002569726
GPLGPPGV	8	Unmodified	_GPLGPPGV_					0	0	0			REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.19940185546875	2	347.200139	692.385725	0.50109	0.00017398	2.896	0.0010055	3.3971	0.0011795	347.20176428076763	42.283	0.79099	42.283	42.037	42.828	0					67	40	2	0	0	0	0.77013	1	16022	16022		24.504	0	1	469600	+		13493	17471	8818	8850	13690	13690					0.02722787605762278
GPLKTDCLQ	9	Unmodified	_GPLKTDCLQ_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;nc|ENSG00000138759|Q86XX4-5|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7527160644531	2	487.75241	973.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.64	1	34.64	34.14	35.14	0								0	0	0	0.28666	1	12280	12280		37.812	9.9293	1				13494	4286	8819	8851	13691	13691					0.002461213001424767
GPLPLPTPPK	10	Unmodified	_GPLPLPTPPK_					0	0	0			REV__ENST00000253799.7_1_17:41001157-41001271:+|nuORF	REV__ENST00000253799.7_1_17:41001157-41001271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8122253417969	2	508.810585	1015.60662	1.1539	0.00058709	0.61064	0.0003107	1.7645	0.00089779	508.8110151079713	44.864	0.33519	44.864	44.628	44.963	0					22	19	2	0	0	0	0.65213	1	17409	17409		27.882	4.8398	1	100210	+		13495	17974	8820	8852	13692	13692					0.09943807862350695
GPPGGLLL	8	Unmodified	_GPPGGLLL_					0	0	0		ENST00000372591.1_2_1:41848017-41848350:+|nuORF;ENSG00000204060|ENST00000641094|FOXO6	ENST00000372591.1_2_1:41848017-41848350:+|nuORF	ENST00000372591.1_2_1:41848017-41848350:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.2222900390625	2	362.223614	722.432676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.755	1	49.755	49.255	50.255	0								0	0	0	1.7419	1	17953	17953		24.504	0	1				13496	7669	8821	8853	13693	13693					0.06035647156909363
GPPPTLPQD	9	Unmodified	_GPPPTLPQD_					0	0	0			REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2365417480469	2	461.23745	920.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.701	1	26.701	26.201	27.201	0								0	0	0	0.3428	1	8427	8427		26.693	2.4902	1		+		13497	18065	8822	8854	13694	13694					-0.003064943735239467
GPQGRAFVH	9	Unmodified	_GPQGRAFVH_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7568054199219	2	484.756675	967.498798	-1.2346	-0.00059846	1.3787	0.00066833	0.14413	6.9868E-05	484.7573096325857	19.101	0.10493	19.101	19.057	19.162	0					5	3	2	0	0	0	0.32741	1	5131	5131		47.916	7.343	1	132240			13498	1085	8823	8855	13695	13695					0.013748560516546604
GPQGRAFVH	9	Unmodified	_GPQGRAFVH_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7566223144531	2	484.756675	967.498798	0.66222	0.00032102	-1.173	-0.00056862	-0.51077	-0.0002476	484.7561242590963	19.322	0.60903	19.322	18.967	19.576	0					19	12	2	0	0	0	0.14734	1	6101	6101		68.485	24.859	1	982540			13499	1085	8823	8855	13696	13696					0.013748560516546604
GPQGRAFVH	9	Unmodified	_GPQGRAFVH_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7563781738281	2	484.756675	967.498798	-2.9162	-0.0014136	2.0117	0.0009752	-0.90445	-0.00043844	484.75758370173486	19.189	0.14146	19.189	19.093	19.234	0					6	3	2	0	0	0	0.14734	1	5167	5167		68.485	31.326	1	154460			13500	1085	8823	8855	13697	13697					0.013748560516546604
GPQGRAFVH	9	Unmodified	_GPQGRAFVH_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.75640869140625	2	484.756675	967.498798	2.4658	0.0011953	-3.4901	-0.0016919	-1.0243	-0.00049653	484.75491013442945	19.318	0.46218	19.318	18.963	19.425	0					16	9	2	0	0	0	0.077948	1	5962	5962		85.359	27.548	1	1235900			13501	1085	8823	8855	13698	13698					0.013748560516546604
GPQLAVNRKV	10	Unmodified	_GPQLAVNRKV_					0	0	0			REV__nc|ENSG00000134744|Q5TAX3-2|TUT4	REV__nc|ENSG00000134744|Q5TAX3-2|TUT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.2207946777344	3	361.220735	1080.64038	-0.93246	-0.00033682	0.94316	0.00034069	0.010697	3.864E-06	361.2211019003323	22.472	0.17954	22.472	22.393	22.572	0					8	5	3	0	0	0	0.52275	1	6629	6629		42.864	12.295	1	559540	+		13502	21027	8824	8856	13699	13699					0.10328229354126961
GPQNASSLKFE	11	Unmodified	_GPQNASSLKFE_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.2957153320312	2	589.296027	1176.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.306	1	44.306	43.806	44.806	0								0	0	0	0.41946	1	17261	17261		32.751	3.5805	1				13503	5038	8825	8857	13700	13700					-0.0037238122454255063
GPQVHGTFF	9	Unmodified	_GPQVHGTFF_					0	0	0			REV__DCP1B|p.P331H|1|0.27|ENSG00000151065|chr12:1952948-1952948|G/T|missense_variant	REV__DCP1B|p.P331H|1|0.27|ENSG00000151065|chr12:1952948-1952948|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.24786376953125	2	495.245609	988.476666	-0.40499	-0.00020057	4.1491	0.0020548	3.7441	0.0018543	495.24752009603	40.589	0.45192	40.589	40.348	40.8	0					33	19	3	0	0	0	0.39215	1	15467	15467		42.396	3.59	1	283060	+		13504	12680	8826	8858	13701	13701					-0.01803368416756257
GPRERRGVL	9	Unmodified	_GPRERRGVL_					0	0	0		ENST00000569516.5_1_16:923326-923722:-|nuORF	ENST00000569516.5_1_16:923326-923722:-|nuORF	ENST00000569516.5_1_16:923326-923722:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.209716796875	3	347.20883	1038.60466	1.4982	0.00052017	0.94859	0.00032936	2.4467	0.00084953	347.2091879360362	35.873	0.30981	35.873	35.721	36.03	0					15	6	3	0	0	0	0.51817	1	13880	13880		37.812	23.118	1	323780			13505	10782	8827	8859	13702	13702					0.08690191897130717
GPRIKKSTG	9	Unmodified	_GPRIKKSTG_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-4|RBBP6;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.287353515625	2	472.287808	942.561064	-0.37969	-0.00017932	0.23103	0.00010911	-0.14866	-7.021E-05	472.28778236236246	53.622	0.34911	53.622	53.49	53.839	0					53	22	3	0	0	0	0.61124	1	16322	16322		16.473	16.473	1	621660			13506	3258	8828	8860	13703	13703					0.0874858239999412
GPRKGREVY	9	Unmodified	_GPRKGREVY_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000547892.1_1_19:49119132-49119324:-|nuORF;ENST00000551749.5_1_19:49119132-49119489:-|nuORF;ENST00000549533.1_1_19:49118631-49119324:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;ENST00000416734.1_1_7:121080890-121081274:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2967529296875	2	531.296165	1060.57778	2.4387	0.0012957	-1.1853	-0.00062976	1.2533	0.00066589	531.295572725319	15.494	0.34026	15.494	15.41	15.75	0					12	8	2	0	0	0	0.35021	1	4027	4027		23.042	0	1	691770			13507	1338	8829	8861	13704	13704					0.04991083285949571
GPRKGREVY	9	Unmodified	_GPRKGREVY_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000547892.1_1_19:49119132-49119324:-|nuORF;ENST00000551749.5_1_19:49119132-49119489:-|nuORF;ENST00000549533.1_1_19:49118631-49119324:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;ENST00000416734.1_1_7:121080890-121081274:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.297607421875	2	531.296165	1060.57778	1.1829	0.00062848	1.1231	0.00059667	2.306	0.0012252	531.2966492055396	15.308	0.11663	15.308	15.237	15.354	0					5	3	2	0	0	0	0.5741	1	3417	3417		11.511	0	1	100650			13508	1338	8829	8861	13705	13705					0.04991083285949571
GPRKGREVY	9	Unmodified	_GPRKGREVY_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000547892.1_1_19:49119132-49119324:-|nuORF;ENST00000551749.5_1_19:49119132-49119489:-|nuORF;ENST00000549533.1_1_19:49118631-49119324:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;ENST00000416734.1_1_7:121080890-121081274:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2972412109375	2	531.296165	1060.57778	0.72434	0.00038484	0.11229	5.9659E-05	0.83663	0.0004445	531.2964914218263	15.468	0.24946	15.468	15.364	15.613	0					10	5	3	0	0	0	0.36892	1	4093	4093		29.15	0	1	219460			13509	1338	8829	8861	13706	13706					0.04991083285949571
GPRPSACCSI	10	Unmodified	_GPRPSACCSI_					0	0	0			REV__ENST00000573846.1_1_16:67976229-67976612:-|nuORF	REV__ENST00000573846.1_1_16:67976229-67976612:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.72967529296875	2	495.728412	989.442271	-0.37668	-0.00018673	3.0586	0.0015162	2.6819	0.0013295	495.73009989455676	32.135	0.25447	32.135	32.048	32.303	0					16	6	4	0	0	0	0.62235	1	11776	11776		31.53	1.0262	1	323940	+		13510	18052	8830	8862	13707	13707					-0.052872758915555096
GPRVSSCL	8	Unmodified	_GPRVSSCL_					0	0	0			REV__ENST00000509933.1_1_6:3231731-3231869:+|nuORF	REV__ENST00000509933.1_1_6:3231731-3231869:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.7130126953125	2	409.713088	817.411622	0.99912	0.00040935	-1.6565	-0.00067868	-0.65736	-0.00026933	409.712566951828	20.976	0.38177	20.976	20.848	21.23	0					20	9	3	0	0	0	0.76283	1	6605	6605		25.45	1.2474	1	498230	+		13511	19863	8831	8863	13708	13708					-0.004386862142609971
GPSFSQDT	8	Unmodified	_GPSFSQDT_					0	0	0		ENSG00000185219|ENST00000396077|ZNF445;ZNF445|p.K976Sfs*50|1|0.19|ENSG00000185219|chr3:44446744-44446744|T/-|frameshift_variant	ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.68304443359375	2	419.682507	837.350462	-0.027662	-1.1609E-05	1.5832	0.00066445	1.5556	0.00065284	419.68323202368316	14.561	0.25038	14.561	14.463	14.714	0					8	5	2	0	0	0	0.7126	1	3813	3813		31.955	6.5047	1	118880			13512	7065	8832	8864	13709	13709					-0.0747191971271377
GPSGRLSSL	9	Unmodified	_GPSGRLSSL_					0	0	0		ENST00000526097.1_1_8:11418120-11421614:+|nuORF	ENST00000526097.1_1_8:11418120-11421614:+|nuORF	ENST00000526097.1_1_8:11418120-11421614:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2430114746094	2	437.243067	872.47158	2.6738	0.0011691	-1.8772	-0.00082079	0.79663	0.00034832	437.24218854692697	29.392	0.80719	29.392	28.775	29.583	0					41	16	3	0	0	0	0.087861	1	10795	10795		82.241	10.363	1	766500			13513	10370	8833	8865	13710	13710					0.03024327720618203
GPSRKPISF	9	Unmodified	_GPSRKPISF_					0	0	0		ENST00000552279.1_1_12:58150872-58151028:+|nuORF	ENST00000552279.1_1_12:58150872-58151028:+|nuORF	ENST00000552279.1_1_12:58150872-58151028:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1909484863281	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.178	1	47.178	46.678	47.678	0								0	0	0	0.37517	1	17338	17338		18.262	0.79408	1				13514	10630	8834	8866	13711	13711					0.0558918002569726
GPTNVRIEY	9	Unmodified	_GPTNVRIEY_					0	0	0		ENSG00000114737|ENST00000348721|CISH;nc|ENSG00000114737|Q9NSE2-2|CISH;nc|ENSG00000114737|Q9NSE2-3|CISH;ENST00000491847.1_1_3:50645040-50646098:-|nuORF	ENSG00000114737|ENST00000348721|CISH	ENSG00000114737|ENST00000348721|CISH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7757568359375	2	524.774731	1047.53491	1.6266	0.00085361	2.5229	0.0013239	4.1495	0.0021775	524.7751977990044	32.412	0.42351	32.412	32.253	32.676	0					17	8	3	0	0	0	0.14578	2	12231	12206;12231		68.846	1.3525	1	1025000			13515	2862	8835	8867	13712;13713	13713					0.013042684378433478
GPTRTVEWL	9	Unmodified	_GPTRTVEWL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2842407226562	2	529.785099	1057.55564	0.11498	6.0915E-05	-4.0735	-0.0021581	-3.9585	-0.0020972	530.2845343382239	11.861	0.32739	11.861	11.786	12.113	0					22	11	3	0	0	0	0.61124	1	2443	2443		19.997	0.89325	1	466080			13516	1153	8836	8868	13714	13714					0.029168588175252808
GPVGVNVTY	9	Unmodified	_GPVGVNVTY_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2394104003906	2	453.239993	904.465432	0.68899	0.00031228	-1.5386	-0.00069733	-0.84956	-0.00038505	453.23943263247645	38.926	0.11465	38.926	38.842	38.956	0					5	4	2	0	0	0	0.41113	1	14790	14790		40.778	1.972	1	58400			13517	7403	8837	8869	13715	13715					0.009378094890848843
GPVGVNVTY	9	Unmodified	_GPVGVNVTY_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2403564453125	2	453.239993	904.465432	0.87728	0.00039762	-0.84757	-0.00038415	0.029705	1.3464E-05	453.23950482186893	38.826	0.2081	38.826	38.729	38.937	0					9	4	3	0	0	0	0.39215	1	15309	15309		42.396	5.237	1	243690			13518	7403	8837	8869	13716	13716					0.009378094890848843
GPVLPLSA	8	Unmodified	_GPVLPLSA_					0	0	0		nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-5|CFAP43;nc|ENSG00000197748|Q8NDM7-4|CFAP43	nc|ENSG00000197748|Q8NDM7-3|CFAP43	nc|ENSG00000197748|Q8NDM7-3|CFAP43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.22802734375	2	377.228897	752.44324	-2.1291	-0.00080316	-0.97269	-0.00036693	-3.1018	-0.0011701	377.22847802735595	46.054	0.16726	46.054	46.013	46.181	0					13	10	2	0	0	0	0.78146	1	15603	15603		23.037	1.3344	1	35820			13519	493	8838	8870	13717	13717					0.05711629811332841
GPVNKTQTT	9	Unmodified	_GPVNKTQTT_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|173|3|sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|173|3|sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|173|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2899475097656	2	473.253631	944.49271	-0.65231	-0.00030871	-0.32072	-0.00015178	-0.97303	-0.00046049	473.2535041404842	15.216	0.21224	15.216	15.062	15.274	0					9	4	3	0	0	0	0.61124	1	4060	4060		16.473	0.83134	1	177350			13520	11184	8839	8871	13718	13718					0.01824293029449109
GPVVVTSS	8	Unmodified	_GPVVVTSS_					0	0	0		nc|ENSG00000100987|Q9NZR4-3|VSX1	nc|ENSG00000100987|Q9NZR4-3|VSX1	nc|ENSG00000100987|Q9NZR4-3|VSX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2099609375	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.735	1	35.735	35.235	36.235	0								0	0	0	1.7419	1	13870	13870		29.842	1.5873	1				13521	11461	8840	8872	13719	13719					0.019344490519983992
GPVVVTSS	8	Unmodified	_GPVVVTSS_					0	0	0		nc|ENSG00000100987|Q9NZR4-3|VSX1	nc|ENSG00000100987|Q9NZR4-3|VSX1	nc|ENSG00000100987|Q9NZR4-3|VSX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2095031738281	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.145	1	47.145	46.645	47.645	0								0	0	0	1.7419	1	18044	18044		23.037	1.3344	1				13522	11461	8840	8872	13720	13720					0.019344490519983992
GPWLEVPPSP	10	Unmodified	_GPWLEVPPSP_					0	0	0		TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant	TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant	TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7835083007812	2	539.782025	1077.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.368	1	17.368	16.868	17.868	0								0	0	0	0.38797	1	4315	4315		34.173	1.3601	1				13523	22520	8841	8873	13721	13721					0.013823405859966442
GPYGGGGQYF	10	Unmodified	_GPYGGGGQYF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENST00000424115.1_1_3:39377022-39377364:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7191467285156	2	501.719424	1001.4243	1.1275	0.00056569	-1.6744	-0.00084007	-0.54688	-0.00027438	501.71861281505306	41.719	0.15277	41.719	41.634	41.787	0					7	4	2	0	0	0	0.47621	1	16633	16633		47.916	5.4411	1	84942			13524	517	8842	8874	13722	13722					-0.07635951550378195
GQAEIIITK	9	Unmodified	_GQAEIIITK_					0	0	0		nc|ENSG00000174306|Q9H4I2-2|ZHX3;ENSG00000174306|ENST00000683867|ZHX3;ZHX3|p.L445Sfs*3|1|0.19|ENSG00000174306|chr20:41203584-41203584|G/-|frameshift_variant	nc|ENSG00000174306|Q9H4I2-2|ZHX3	nc|ENSG00000174306|Q9H4I2-2|ZHX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7882080078125	2	486.78985	971.565146	-0.085204	-4.1476E-05	-1.3668	-0.00066533	-1.452	-0.00070681	486.7893177993657	28.695	0.26285	28.695	28.532	28.795	0					8	5	2	0	0	0	0.14578	1	10525	10525		68.846	12.412	1	136780			13525	6482	8843	8875	13723	13723					0.07822627103053037
GQAEIIITK	9	Unmodified	_GQAEIIITK_					0	0	0		nc|ENSG00000174306|Q9H4I2-2|ZHX3;ENSG00000174306|ENST00000683867|ZHX3;ZHX3|p.L445Sfs*3|1|0.19|ENSG00000174306|chr20:41203584-41203584|G/-|frameshift_variant	nc|ENSG00000174306|Q9H4I2-2|ZHX3	nc|ENSG00000174306|Q9H4I2-2|ZHX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7811584472656	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.406	1	28.406	27.906	28.906	0								0	0	0	0.14961	1	9424	9424		59.931	6.9941	1				13526	6482	8843	8875	13724	13724					0.07822627103053037
GQAEIIITK	9	Unmodified	_GQAEIIITK_					0	0	0		nc|ENSG00000174306|Q9H4I2-2|ZHX3;ENSG00000174306|ENST00000683867|ZHX3;ZHX3|p.L445Sfs*3|1|0.19|ENSG00000174306|chr20:41203584-41203584|G/-|frameshift_variant	nc|ENSG00000174306|Q9H4I2-2|ZHX3	nc|ENSG00000174306|Q9H4I2-2|ZHX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.78857421875	2	486.78985	971.565146	-0.54627	-0.00026592	-0.7593	-0.00036962	-1.3056	-0.00063554	486.78926643712987	28.716	0.31554	28.716	28.511	28.826	0					12	6	2	0	0	0	0.090954	1	10376	10376		81.525	10.709	1	532730			13527	6482	8843	8875	13725	13725					0.07822627103053037
GQAGIPVLPFQ	11	Unmodified	_GQAGIPVLPFQ_					0	0	0		ENST00000533581.1_1_1:31658018-31661124:-|nuORF	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.81640625	2	563.816399	1125.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.129	1	31.129	30.629	31.629	0								0	0	0	0.32536	1	9981	9981		39.253	0	1				13528	10462	8844	8876	13726	13726					0.060460048857066795
GQALYIIAK	9	Unmodified	_GQALYIIAK_					0	0	0		PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB;ENST00000566436.1_1_16:47628094-47631731:+|nuORF	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.79449462890625	2	488.794935	975.575317	0.78537	0.00038389	-2.2695	-0.0011093	-1.4841	-0.00072541	488.7935778446705	35.318	0.27084	35.318	35.213	35.484	0					12	5	3	0	0	0	0.098791	1	13615	13615		79.713	13.283	1	623130			13529	2197	8845	8877	13727	13727					0.08655234828290759
GQAPATTALR	10	Unmodified	_GQAPATTALR_					0	0	0		ENST00000485091.5_1_16:772680-775160:-|nuORF;nc|ENSG00000162004|A2IDD5|CCDC78;ENSG00000162004|ENST00000345165|CCDC78	ENST00000485091.5_1_16:772680-775160:-|nuORF	ENST00000485091.5_1_16:772680-775160:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2747497558594	2	493.274898	984.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.015	1	18.015	17.515	18.515	0								0	0	0	0.39244	1	4634	4634		32.812	1.2826	1				13530	5436	8846	8878	13728	13728					0.0423568815768931
GQATFQQSK	9	Unmodified	_GQATFQQSK_					0	0	0		ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.75103759765625	2	497.751256	993.487959	-0.055996	-2.7872E-05	-0.3582	-0.0001783	-0.4142	-0.00020617	497.751057800416	17.006	0.30015	17.006	16.903	17.203	0					24	10	4	0	0	0	0.022698	1	3947	3947		117.53	55.418	1	1365500			13531	9479	8847	8879	13729	13729					-0.009045911132830042
GQATFQQSK	9	Unmodified	_GQATFQQSK_					0	0	0		ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7501220703125	2	497.751256	993.487959	-0.28289	-0.00014081	-0.22947	-0.00011422	-0.51236	-0.00025503	497.7511545980594	17.299	0.32708	17.299	17.172	17.499	0					20	8	4	0	0	0	0.013298	1	4827	4827		133.99	54.281	1	7639800			13532	9479	8847	8879	13730	13730					-0.009045911132830042
GQATFQQSK	9	Unmodified	_GQATFQQSK_					0	0	0		ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7508850097656	2	497.751256	993.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.214	1	17.214	16.714	17.714	0								0	0	0	0.005321	1	5072	5072		177.3	78.675	1				13533	9479	8847	8879	13731	13731					-0.009045911132830042
GQAVALRAK	9	Unmodified	_GQAVALRAK_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2824401855469	2	457.282526	912.550499	-0.3958	-0.00018099	-0.36265	-0.00016583	-0.75845	-0.00034683	457.2825332341619	17.476	0.085472	17.476	17.41	17.495	0					5	3	2	0	0	0	0.055856	1	4173	4173		93.195	35.384	1	109240			13534	5326	8848	8880	13732	13732					0.09072599745547905
GQAVALRAK	9	Unmodified	_GQAVALRAK_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.282470703125	2	457.282526	912.550499	-0.62446	-0.00028556	0.38865	0.00017772	-0.23581	-0.00010783	457.2827039433283	17.812	0.1315	17.812	17.724	17.855	0					8	3	3	0	0	0	0.0073253	1	5102	5102		148.04	52.228	1	1131700			13535	5326	8848	8880	13733	13733					0.09072599745547905
GQAVALRAK	9	Unmodified	_GQAVALRAK_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2822570800781	2	457.282526	912.550499	-1.1226	-0.00051337	0.91158	0.00041685	-0.21107	-9.6517E-05	457.2826612036858	17.524	0.10528	17.524	17.459	17.564	0					5	3	2	0	0	0	0.1115	1	4412	4412		76.774	2.7994	1	122540			13536	5326	8848	8880	13734	13734					0.09072599745547905
GQAVALRAK	9	Unmodified	_GQAVALRAK_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2823486328125	2	457.282526	912.550499	-0.61994	-0.00028349	0.30929	0.00014143	-0.31065	-0.00014205	457.28266056784184	17.777	0.16848	17.777	17.668	17.836	0					5	3	2	0	0	0	0.0073253	1	5350	5350		148.04	57.266	1	808500			13537	5326	8848	8880	13735	13735					0.09072599745547905
GQAVTLIFK	9	Unmodified	_GQAVTLIFK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7948303222656	2	488.794935	975.575317	0.61426	0.00030025	-1.5975	-0.00078086	-0.98327	-0.00048062	488.7943539441521	40.236	0.34603	40.236	40.079	40.425	0					19	13	2	0	0	0	0.25761	1	15851	15851		54.722	8.7501	1	170220			13538	4629	8849	8881	13736	13736					0.08655234828290759
GQAVTLIFK	9	Unmodified	_GQAVTLIFK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.794921875	2	488.794935	975.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.207	1	40.207	39.707	40.707	0								0	0	0	0.19847	1	15947	15947		51.193	1.7511	1				13539	4629	8849	8881	13737	13737					0.08655234828290759
GQCGNQIGAK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GNQIGAK_	GQC(1)GNQIGAK		GQC(82)GNQIGAK		0	1	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554116.5_1_16:89989809-89998148:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7481689453125	2	516.74819	1031.48183	0.31781	0.00016423	-0.0032558	-1.6824E-06	0.31456	0.00016255	516.748114861642	15.514	0.14165	15.514	15.462	15.603	0					12	5	3	0	0	0	0.17732	1	3384	3384		82.241	42.988	1	211490			13540	7342;8050	8850	8882	13738	13738	310				-0.03265432616444741
GQCGNQIGAK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GNQIGAK_	GQC(1)GNQIGAK		GQC(170)GNQIGAK		0	1	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554116.5_1_16:89989809-89998148:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7485961914062	2	516.74819	1031.48183	0.040547	2.0953E-05	0.12127	6.2664E-05	0.16181	8.3616E-05	516.7484359568043	15.81	0.21139	15.81	15.726	15.937	0					16	5	4	0	0	0	0.0047415	1	4165	4165		166.68	62.622	1	1696700			13541	7342;8050	8850	8882	13739	13739	310				-0.03265432616444741
GQCGNQIGAK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GNQIGAK_	GQC(1)GNQIGAK		GQC(120)GNQIGAK		0	1	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554116.5_1_16:89989809-89998148:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7488403320312	2	516.74819	1031.48183	-0.0074488	-3.8491E-06	0.58386	0.00030171	0.57641	0.00029786	516.7486372245306	15.563	0.19302	15.563	15.483	15.676	0					14	7	3	0	0	0	0.029105	1	3570	3570		118.74	45.864	1	340880			13542	7342;8050	8850	8882	13740	13740	310				-0.03265432616444741
GQCGNQIGAK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GNQIGAK_	GQC(1)GNQIGAK		GQC(170)GNQIGAK		0	1	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554116.5_1_16:89989809-89998148:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.748291015625	2	516.74819	1031.48183	1.4901	0.00076999	-1.6537	-0.00085453	-0.1636	-8.454E-05	516.7475076188031	15.78	0.30988	15.78	15.669	15.979	0					15	6	4	0	0	0	0.0047415	1	4392	4392		166.68	51.184	1	4446100			13543	7342;8050	8850	8882	13741	13741	310				-0.03265432616444741
GQCGNQIGAK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GNQIGAK_	GQC(1)GNQIGAK		GQC(110)GNQIGAK		0	1	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554116.5_1_16:89989809-89998148:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7489624023438	2	516.74819	1031.48183	0.821	0.00042425	0.63225	0.00032671	1.4532	0.00075096	516.7485065791371	15.573	0.14964	15.573	15.507	15.657	0					9	5	2	0	0	0	0.047644	1	3518	3518		110.12	58.927	1	133090			13544	7342;8050	8850	8882	13742	13742	310				-0.03265432616444741
GQCGNQIGAK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GNQIGAK_	GQC(1)GNQIGAK		GQC(110)GNQIGAK		0	1	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554116.5_1_16:89989809-89998148:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7489013671875	2	516.74819	1031.48183	-1.4877	-0.00076879	2.4994	0.0012916	1.0117	0.00052279	516.7496717462807	15.567	0.18317	15.567	15.464	15.648	0					15	6	3	0	0	0	0.047644	1	3509	3509		110.12	40.492	1	361240			13545	7342;8050	8850	8882	13743	13743	310				-0.03265432616444741
GQCGNQIGAK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GNQIGAK_	GQC(1)GNQIGAK		GQC(140)GNQIGAK		0	1	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554116.5_1_16:89989809-89998148:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7484130859375	2	516.74819	1031.48183	1.5387	0.0007951	-1.779	-0.00091932	-0.24039	-0.00012422	516.7474330459709	15.789	0.31526	15.789	15.681	15.997	0					15	6	4	0	0	0	0.010762	1	4231	4231		139.97	51.794	1	3441500			13546	7342;8050	8850	8882	13744	13744	310				-0.03265432616444741
GQCGPVGVRK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GPVGVRK_	GQC(1)GPVGVRK		GQC(120)GPVGVRK		0	1	0		RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant;RXRB|p.G327Vfs*10|1|0.45|ENSG00000204231|chr6:33196447-33196447|C/-|frameshift_variant;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant	RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2824096679688	2	529.2822	1056.54985	0.11219	5.9381E-05	0.038947	2.0614E-05	0.15114	7.9995E-05	529.2823693702653	16.895	0.25015	16.895	16.768	17.018	0					12	6	3	0	0	0	0.029105	1	4657	4657		118.74	47.447	1	748060			13547	7684	8851	8883	13745	13745	331				0.02383437034200142
GQCGPVGVRK	10	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))GPVGVRK_	GQC(1)GPVGVRK		GQC(70)GPVGVRK		0	1	0		RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant;RXRB|p.G327Vfs*10|1|0.45|ENSG00000204231|chr6:33196447-33196447|C/-|frameshift_variant;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant	RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2828979492188	2	529.2822	1056.54985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.645	1	16.645	16.145	17.145	0								0	0	0	0.15566	1	3992	3992		69.628	21.668	1				13548	7684	8851	8883	13746	13746	331				0.02383437034200142
GQCPMRVQK	9	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))PMRVQK_	GQC(1)PMRVQK		GQC(51)PMRVQK		0	1	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.27587890625	2	552.27606	1102.53757	0.24616	0.00013595	1.0051	0.00055508	1.2512	0.00069103	552.2764953271526	17.046	0.093985	17.046	16.993	17.087	0					5	3	2	0	0	0	0.2873	1	4196	4196		51.335	23.453	1	70289			13549	5800	8852	8884	13747	13747	245				-0.009599227005082867
GQCPMRVQK	9	Carbamidomethyl (C)	_GQC(Carbamidomethyl (C))PMRVQK_	GQC(1)PMRVQK		GQC(88)PMRVQK		0	1	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2763061523438	2	552.27606	1102.53757	1.6029	0.00088526	-1.6544	-0.00091369	-0.051477	-2.8429E-05	552.2755634933987	17.259	0.22031	17.259	17.098	17.318	0					13	4	4	0	0	0	0.071197	1	5106	5106		87.754	12.711	1	812040			13550	5800	8852	8884	13748	13748	245				-0.009599227005082867
GQCRGYEI	8	Unmodified	_GQCRGYEI_					0	0	0		nc|ENSG00000134253|Q9H8W5-2|TRIM45;ENSG00000134253|ENST00000256649|TRIM45;TRIM45|p.K472Rfs*24|1|0.12|ENSG00000134253|chr1:117115629-117115629|G/-|frameshift_variant	nc|ENSG00000134253|Q9H8W5-2|TRIM45;TRIM45|p.K472Rfs*24|1|0.12|ENSG00000134253|chr1:117115629-117115629|G/-|frameshift_variant	nc|ENSG00000134253|Q9H8W5-2|TRIM45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2131652832031	2	463.213452	924.412351	-0.99269	-0.00045983	0.14994	6.9456E-05	-0.84274	-0.00039037	463.21374857602706	27.594	0.15968	27.594	27.49	27.649	0					6	3	2	0	0	0	0.68432	1	10028	10028		35.618	3.6634	1	61497			13551	3903;23062	8853	8885	13749	13749					-0.05287891565217251
GQDHPAPSQD	10	Unmodified	_GQDHPAPSQD_					0	0	0		BOD1|p.P177H|1|0.24|ENSG00000145919|chr5:173609267-173609267|G/T|missense_variant	BOD1|p.P177H|1|0.24|ENSG00000145919|chr5:173609267-173609267|G/T|missense_variant	BOD1|p.P177H|1|0.24|ENSG00000145919|chr5:173609267-173609267|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.226318359375	2	526.225602	1050.43665	0.099992	5.2618E-05	0.22486	0.00011832	0.32485	0.00017094	526.2258384510181	16.776	0.78118	16.776	16.521	17.302	0					40	19	3	0	0	0	0.41335	1	4603	4603		54.776	3.4409	1	15232000			13552	310	8854	8886	13750	13750					-0.08654959877981128
GQDKYDTFC	9	Unmodified	_GQDKYDTFC_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7234497070312	2	538.721307	1075.42806	3.3955	0.0018292	0.60514	0.000326	4.0006	0.0021552	538.721617660305	19.765	0.71957	19.765	19.557	20.277	0					35	14	5	0	0	0	0.18605	1	6153	6153		63.306	3.188	1	5835700	+		13553	13966	8855	8887	13751	13751					-0.1066364983882977
GQDPDSPQH	9	Unmodified	_GQDPDSPQH_					0	0	0		ENSG00000178719|ENST00000395068|GRINA	ENSG00000178719|ENST00000395068|GRINA	ENSG00000178719|ENST00000395068|GRINA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.70703125	2	490.707045	979.399537	-0.053172	-2.6092E-05	-0.12555	-6.1606E-05	-0.17872	-8.7698E-05	490.7069668681513	16.037	0.10627	16.037	15.996	16.102	0					5	4	2	0	0	0	0.58342	1	3590	3590		23.523	7.0495	1	67204			13554	6725	8856	8888	13752	13752					-0.09098631423751158
GQDPDSPQH	9	Unmodified	_GQDPDSPQH_					0	0	0		ENSG00000178719|ENST00000395068|GRINA	ENSG00000178719|ENST00000395068|GRINA	ENSG00000178719|ENST00000395068|GRINA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7067565917969	2	490.707045	979.399537	-0.49788	-0.00024431	0.073699	3.6165E-05	-0.42418	-0.00020815	490.7071137413642	16.358	0.26742	16.358	16.225	16.492	0					12	6	3	0	0	0	0.085655	1	4405	4405		82.75	19.444	1	531790			13555	6725	8856	8888	13753	13753					-0.09098631423751158
GQDPDSPQH	9	Unmodified	_GQDPDSPQH_					0	0	0		ENSG00000178719|ENST00000395068|GRINA	ENSG00000178719|ENST00000395068|GRINA	ENSG00000178719|ENST00000395068|GRINA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.706787109375	2	490.707045	979.399537	-0.72595	-0.00035623	0.22602	0.00011091	-0.49993	-0.00024532	490.7072122828707	16.305	0.21695	16.305	16.196	16.413	0					9	4	3	0	0	0	0.36892	1	4644	4644		44.377	0.26039	1	409330			13556	6725	8856	8888	13754	13754					-0.09098631423751158
GQDTEESSEI	10	Unmodified	_GQDTEESSEI_					0	0	0			REV__PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant	REV__PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.7296752929688	2	547.72784	1093.44113	0.42508	0.00023283	1.2004	0.00065747	1.6254	0.0008903	547.7287710969961	20.193	0.41587	20.193	20.031	20.447	0					27	13	3	0	0	0	0.55603	1	5631	5631		39.253	3.6345	1	541700	+		13557	13774	8857	8889	13755	13755					-0.10185540245720404
GQEELVQVEQ	10	Unmodified	_GQEELVQVEQ_					0	0	0			REV__ARHGEF5|p.A447Qfs*7|1|0.08|ENSG00000050327|chr7:144364003-144364003|C/-|frameshift_variant	REV__ARHGEF5|p.A447Qfs*7|1|0.08|ENSG00000050327|chr7:144364003-144364003|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.7860717773438	2	579.785492	1157.55643	-1.6838	-0.00097625	0.94655	0.0005488	-0.73726	-0.00042745	579.7859854587249	25.607	0.23202	25.607	25.503	25.735	0					19	6	4	0	0	0	0.60281	1	8151	8151		33.922	0	1	595750	+		13558	12217	8858	8890	13756	13756					-0.016043913240764596
GQEEQARLV	9	Unmodified	_GQEEQARLV_					0	0	0		ATAD3C|p.R306Q|1|0.12|ENSG00000215915|chr1:1460854-1460854|G/A|missense_variant	ATAD3C|p.R306Q|1|0.12|ENSG00000215915|chr1:1460854-1460854|G/A|missense_variant	ATAD3C|p.R306Q|1|0.12|ENSG00000215915|chr1:1460854-1460854|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2705078125	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.433	1	18.433	17.933	18.933	0								0	0	0	0.31838	1	4809	4809		31.53	4.7337	1				13559	245	8859	8891	13757	13757					0.011950804324442288
GQEHAEVD	8	Unmodified	_GQEHAEVD_					0	0	0			REV__ENSG00000074201|ENST00000525428|CLNS1A	REV__ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.6905212402344	2	442.690864	883.367175	-0.34311	-0.00015189	-0.14723	-6.5179E-05	-0.49035	-0.00021707	442.69078348485755	14.909	0.56276	14.909	14.807	15.369	0					20	13	3	0	0	0	0.64144	1	3742	3742		42.396	10.866	1	432210	+		13560	13215	8860	8892	13758	13758					-0.07917418826752964
GQFEQHFQH	9	Unmodified	_GQFEQHFQH_					0	0	0		ENST00000474985.5_1_2:33809845-33813599:-|nuORF;ENSG00000119812|ENST00000238823|FAM98A	ENST00000474985.5_1_2:33809845-33813599:-|nuORF	ENST00000474985.5_1_2:33809845-33813599:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.2594604492188	2	579.259779	1156.50501	-0.40283	-0.00023334	-0.42745	-0.0002476	-0.83028	-0.00048095	579.2597120064981	23.436	0.11769	23.436	23.378	23.496	0					4	2	2	0	0	0	0.063171	1	8088	8088		90.601	26.394	1	160450			13561	3143	8861	8893	13759	13759					-0.06698670507489624
GQFFLNLR	8	Unmodified	_GQFFLNLR_					0	0	0			REV__nc|ENSG00000122966|O14578-2|CIT	REV__nc|ENSG00000122966|O14578-2|CIT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2733154296875	2	497.777077	993.5396	-0.28075	-0.00013975	2.6154	0.0013019	2.3347	0.0011622	497.77951935422254	32.99	0.56399	32.99	32.775	33.339	0					41	15	3	0	0	0	0.64096	1	12091	12091		42.474	1.9018	1	852250	+		13562	14348	8862	8894	13760	13760					0.042571973712597355
GQFFSNSSI	9	Unmodified	_GQFFSNSSI_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.73223876953125	2	493.732532	985.45051	0.87938	0.00043418	-0.88172	-0.00043533	-0.0023306	-1.1507E-06	493.7321064081073	43.389	0.19198	43.389	43.283	43.475	0					13	7	2	0	0	0	0.24334	1	17365	17365		56.434	1.5392	1	85511			13563	5231	8863	8895	13761	13761					-0.04279682378898997
GQFKDIITK	9	Unmodified	_GQFKDIITK_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.3038940429688	2	525.303124	1048.5917	1.908	0.0010023	-0.67691	-0.00035558	1.2311	0.0006467	525.3028782917856	27.759	0.31262	27.759	27.665	27.977	0					12	7	3	0	0	0	0.040209	1	9742	9742		99.013	26.134	1	398350			13564	4438;1447	8864	8896	13762	13762					0.06934315994340068
GQFKDIITK	9	Unmodified	_GQFKDIITK_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.3037109375	2	525.303124	1048.5917	0.98907	0.00051956	-0.74117	-0.00038934	0.2479	0.00013022	525.3027612275092	27.773	0.31469	27.773	27.665	27.98	0					8	6	2	0	0	0	0.067603	1	10110	10110		89.029	10.765	1	228210			13565	4438;1447	8864	8896	13763	13763					0.06934315994340068
GQFKDIITK	9	Unmodified	_GQFKDIITK_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.3033447265625	2	525.303124	1048.5917	0.56582	0.00029723	2.3617	0.0012406	2.9275	0.0015378	525.3030926673839	27.721	0.47253	27.721	27.357	27.829	0					15	9	3	0	0	0	0.014413	1	9963	9963		131.62	38.473	1	367490			13566	4438;1447	8864	8896	13764	13764					0.06934315994340068
GQFTGEKIQ	9	Unmodified	_GQFTGEKIQ_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7619934082031	2	504.261456	1006.50836	-0.83173	-0.00041941	0.32058	0.00016165	-0.51116	-0.00025776	504.26164981675566	28.792	0.27383	28.792	28.693	28.966	0					20	10	3	0	0	0	0.19952	1	9363	9363		54.776	5.3348	1	306980	+		13567	17514	8865	8897	13765	13765					0.005365795465081646
GQGASVTDLL	10	Unmodified	_GQGASVTDLL_					0	0	0			REV__ENST00000470779.1_1_1:155028301-155028614:+|nuORF	REV__ENST00000470779.1_1_1:155028301-155028614:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.75482177734375	2	480.753464	959.492375	-0.63619	-0.00030585	0.24913	0.00011977	-0.38707	-0.00018608	480.75414071990076	39.694	0.2766	39.694	39.575	39.852	0					12	6	3	0	0	0	0.44601	1	15683	15683		51.193	3.2771	1	131370	+		13568	19475	8866	8898	13766	13766					0.011008733096218748
GQGEIPQGF	9	Unmodified	_GQGEIPQGF_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.72735595703125	2	466.727249	931.439946	0.63765	0.00029761	-0.33553	-0.0001566	0.30212	0.00014101	466.72722331337764	34.385	0.31157	34.385	34.277	34.589	0					11	6	3	0	0	0	0.33044	1	13190	13190		47.657	5.1829	1	293150			13569	7652	8867	8899	13767	13767					-0.028516650333358484
GQGESLRVK	9	Unmodified	_GQGESLRVK_					0	0	0		ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.274658203125	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.147	1	16.147	15.647	16.647	0								0	0	0	0.21054	1	3765	3765		49.442	1.5259	1				13570	4795	8868	8900	13768	13768					0.04787688157705361
GQGKLQELE	9	Unmodified	_GQGKLQELE_					0	0	0			REV__ENSG00000026025|ENST00000544301|VIM	REV__ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2665100097656	2	501.266739	1000.51892	0.93852	0.00047045	-1.5485	-0.00077619	-0.60994	-0.00030574	501.2658793719209	26.619	0.16799	26.619	26.509	26.677	0					11	3	4	0	0	0	0.1424	1	9560	9560		69.628	10.846	1	1404000	+		13571	12958	8869	8901	13769	13769					0.018685622009456893
GQGPRSPHK	9	Unmodified	_GQGPRSPHK_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2602233886719	2	482.259582	962.504612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.459	1	11.459	10.959	11.959	0								0	0	0	0.31838	1	2231	2231		31.53	8.4873	1				13572	7406	8870	8902	13770	13770					0.021859545633219568
GQGSYFAKK	9	Unmodified	_GQGSYFAKK_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.25872802734375	2	493.258717	984.50288	-0.50408	-0.00024864	0.24378	0.00012025	-0.2603	-0.0001284	493.2590064657373	18.509	0.23109	18.509	18.369	18.6	0					9	5	3	0	0	0	0.055856	1	5441	5441		93.195	2.8256	1	334530			13573	5589	8871	8903	13771	13771					0.010009007547068904
GQGTFTKIFK	10	Unmodified	_GQGTFTKIFK_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.81689453125	2	563.816399	1125.61824	0.39994	0.00022549	0.20204	0.00011392	0.60198	0.00033941	563.816474917625	31.409	0.25388	31.409	31.319	31.573	0					17	6	4	0	0	0	0.068922	1	11418	11418		101.46	45.956	1	610330			13574	1921	8872	8904	13772	13772					0.060460048857066795
GQGTFTKIFK	10	Unmodified	_GQGTFTKIFK_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.8159790039062	2	563.816399	1125.61824	-0.37664	-0.00021235	0.71165	0.00040124	0.33501	0.00018889	563.8163444587185	31.189	0.2008	31.189	31.103	31.304	0					12	7	2	0	0	0	0.026945	1	10306	10306		120.87	52.022	1	115090			13575	1921	8872	8904	13773	13773					0.060460048857066795
GQGTFTKIFK	10	Unmodified	_GQGTFTKIFK_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.2132873535156	3	376.213358	1125.61824	0.6945	0.00026128	-0.5201	-0.00019567	0.1744	6.5611E-05	376.21298143306177	31.39	0.7349	31.39	31.126	31.861	0					34	16	3	0	0	0	0.53919	1	11840	11840		41.08	15.017	1	2378800			13576	1921	8872	8904	13774	13774					0.060460048857066795
GQGTFTKIFK	10	Unmodified	_GQGTFTKIFK_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.816650390625	2	563.816399	1125.61824	0.12006	6.7692E-05	0.25918	0.00014613	0.37924	0.00021382	563.8164942006501	31.405	0.32419	31.405	31.281	31.605	0					19	7	4	0	0	0	0.029825	1	11833	11833		117.53	51.096	1	822950			13577	1921	8872	8904	13775	13775					0.060460048857066795
GQGVNHAADQ	10	Unmodified	_GQGVNHAADQ_					0	0	0		SBSN|p.L494H|1|0.56|ENSG00000189001|chr19:35526801-35526801|A/T|missense_variant;nc|ENSG00000189001|Q6UWP8-2|SBSN;ENSG00000189001|ENST00000452271|SBSN	SBSN|p.L494H|1|0.56|ENSG00000189001|chr19:35526801-35526801|A/T|missense_variant	SBSN|p.L494H|1|0.56|ENSG00000189001|chr19:35526801-35526801|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.72967529296875	2	498.728312	995.442071	-0.23907	-0.00011923	2.8404	0.0014166	2.6014	0.0012974	498.7300228488123	13.487	0.21846	13.487	13.406	13.624	0					10	6	2	0	0	0	0.60281	1	3084	3084		33.922	1.1092	1	1121100			13578	7291	8873	8905	13776	13776					-0.055832362955356984
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7481994628906	2	456.748516	911.482479	-0.38949	-0.0001779	-0.34171	-0.00015608	-0.7312	-0.00033397	456.7483817120142	18.158	0.20611	18.158	18.061	18.267	0					16	7	3	0	0	0	0.0090225	1	4471	4471		143.11	38.36	1	691200			13579	6758	8874	8906	13777	13777					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7484130859375	2	456.748516	911.482479	-0.61281	-0.0002799	0.083424	3.8104E-05	-0.52939	-0.0002418	456.74856343746217	18.469	0.35715	18.469	18.326	18.683	0					19	8	4	0	0	0	0.023074	1	5398	5398		116.9	20.713	1	4285100			13580	6758	8874	8906	13778	13778					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.7482604980469	2	456.748516	911.482479	-1.052	-0.00048048	0.64339	0.00029387	-0.40857	-0.00018661	456.7487697226063	18.154	0.1457	18.154	18.093	18.239	0					11	5	3	0	0	0	0.099922	1	4700	4700		79.451	4.4077	1	225050			13581	6758	8874	8906	13779	13779					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.7480163574219	2	456.748516	911.482479	-1.1194	-0.0005113	0.45634	0.00020843	-0.66309	-0.00030287	456.7486499232775	18.176	0.12116	18.176	18.082	18.204	0					8	4	2	0	0	0	0.071197	1	4696	4696		87.754	21.325	1	172810			13582	6758	8874	8906	13780	13780					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.74822998046875	2	456.748516	911.482479	0.72173	0.00032965	-0.5789	-0.00026441	0.14283	6.5236E-05	456.7479870512943	18.404	0.31696	18.404	18.344	18.661	0					19	6	4	0	0	0	0.034359	1	5653	5653		104.75	13.97	1	2071000			13583	6758	8874	8906	13781	13781					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7483215332031	2	456.748516	911.482479	-0.59101	-0.00026994	0.22599	0.00010322	-0.36502	-0.00016672	456.7486447152016	18.385	0.11591	18.385	18.327	18.443	0					6	2	3	0	0	0	0.030949	1	5646	5646		108.09	14.892	1	634250			13584	6758	8874	8906	13782	13782					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7481689453125	2	456.748516	911.482479	2.4889	0.0011368	-2.9542	-0.0013493	-0.4653	-0.00021252	456.7471088585311	18.396	0.3648	18.396	18.288	18.653	0					19	7	4	0	0	0	0.034359	1	5510	5510		104.75	8.5561	1	4132100			13585	6758	8874	8906	13783	13783					0.02319730094905026
GQGVSSLPYF	10	Unmodified	_GQGVSSLPYF_					0	0	0		ENST00000550178.1_1_12:120934019-120934079:+|nuORF	ENST00000550178.1_1_12:120934019-120934079:+|nuORF	ENST00000550178.1_1_12:120934019-120934079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7636108398438	2	527.763832	1053.51311	1.2474	0.00065832	-0.30604	-0.00016152	0.94134	0.0004968	527.7636323711955	32.812	0.28464	32.812	32.727	33.012	0					11	7	2	0	0	0	0.47859	1	11437	11437		47.657	5.2612	1	181450			13586	10614	8875	8907	13784	13784					-0.011505363107289668
GQHRTRGVL	9	Unmodified	_GQHRTRGVL_					0	0	0		ENST00000325321.7_1_19:51379973-51380176:+|nuORF	ENST00000325321.7_1_19:51379973-51380176:+|nuORF	ENST00000325321.7_1_19:51379973-51380176:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.86590576171875	3	341.865063	1022.57336	1.4741	0.00050394	0.97803	0.00033436	2.4521	0.00083829	341.8654556323326	27.656	1.5155	27.656	27.506	29.022	0					46	31	4	0	0	0	0.41113	1	10058	10058		40.778	40.778	1	601940			13587	8645	8876	8908	13785	13785					0.0629761886302731
GQHTVLLVK	9	Unmodified	_GQHTVLLVK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.8057556152344	2	497.805834	993.597115	0.19504	9.7092E-05	-0.61234	-0.00030482	-0.4173	-0.00020773	497.8056594544274	23.609	0.20332	23.609	23.526	23.729	0					15	7	3	0	0	0	0.052435	1	6844	6844		88.177	28.059	1	293730			13588	6795	8877	8909	13786	13786					0.10006039576853709
GQHTVLLVK	9	Unmodified	_GQHTVLLVK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.8060302734375	2	497.805834	993.597115	-1.1257	-0.00056039	1.9579	0.00097464	0.83215	0.00041425	497.80668682378047	23.671	0.13156	23.671	23.612	23.743	0					7	4	2	0	0	0	0.24169	1	7140	7140		58.23	18.977	1	109960			13589	6795	8877	8909	13787	13787					0.10006039576853709
GQHTVLLVK	9	Unmodified	_GQHTVLLVK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.805908203125	2	497.805834	993.597115	0.80376	0.00040012	-1.1017	-0.00054842	-0.29792	-0.00014831	497.8053514125863	23.909	0.26608	23.909	23.796	24.062	0					15	5	4	0	0	0	0.026656	1	8310	8310		106.68	29.365	1	846610			13590	6795	8877	8909	13788	13788					0.10006039576853709
GQHTVLLVK	9	Unmodified	_GQHTVLLVK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.8057556152344	2	497.805834	993.597115	0.17962	8.9414E-05	-0.74164	-0.00036919	-0.56202	-0.00027978	497.8054255475323	23.717	0.2583	23.717	23.601	23.86	0					11	6	3	0	0	0	0.01077	1	7274	7274		134.77	52.525	1	335380			13591	6795	8877	8909	13789	13789					0.10006039576853709
GQHTVLLVK	9	Unmodified	_GQHTVLLVK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.206298828125	3	332.206315	993.597115	-1.907	-0.0006335	1.5694	0.00052136	-0.33759	-0.00011215	332.20690407596857	23.71	0.16668	23.71	23.627	23.794	0					9	4	3	0	0	0	0.14578	1	7267	7267		68.846	19.31	1	416480			13592	6795	8877	8909	13790	13790					0.10006039576853709
GQHTVLLVK	9	Unmodified	_GQHTVLLVK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.805908203125	2	497.805834	993.597115	-0.71911	-0.00035798	0.68978	0.00034338	-0.02933	-1.4601E-05	497.8061662024958	23.869	0.26478	23.869	23.732	23.996	0					10	5	3	0	0	0	0.13109	1	8155	8155		75.043	5.4157	1	217520			13593	6795	8877	8909	13791	13791					0.10006039576853709
GQHTVLLVK	9	Unmodified	_GQHTVLLVK_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.8055419921875	2	497.805834	993.597115	1.0186	0.00050708	-0.99014	-0.0004929	0.028477	1.4176E-05	497.8051620976442	23.883	0.41413	23.883	23.716	24.13	0					30	8	5	0	0	0	0.0028263	1	8144	8144		167.23	74.033	1	2790600			13594	6795	8877	8909	13792	13792					0.10006039576853709
GQIMVWMET	9	Unmodified	_GQIMVWMET_					0	0	0		ACOT12|p.A207V|1|0.33|ENSG00000172497|chr5:81347807-81347807|G/A|missense_variant	ACOT12|p.A207V|1|0.33|ENSG00000172497|chr5:81347807-81347807|G/A|missense_variant	ACOT12|p.A207V|1|0.33|ENSG00000172497|chr5:81347807-81347807|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7565307617188	2	547.754095	1093.49364	3.8364	0.0021014	4.4668	0.0024467	8.3032	0.0045481	547.7565999384509	41.409	0.76868	41.409	41.047	41.816	0					27	19	2	0	0	0	0.54267	1	16355	16355		27.882	2.3082	1	91566			13595	37	8878	8910	13793	13793					-0.049369519174661036
GQITGNLLI	9	Unmodified	_GQITGNLLI_					0	0	0			REV__ENSG00000187527|ENST00000342358|ATP13A5	REV__ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7767028808594	2	464.776742	927.538931	-0.1397	-6.4928E-05	0.77748	0.00036136	0.63778	0.00029643	464.7772227281442	30.114	0.19645	30.114	30.008	30.205	0					6	4	2	0	0	0	0.28897	1	11233	11233		51.193	5.2204	1	88788	+		13596	17122	8879	8911	13794	13794					0.07226357931563143
GQKILSIIY	9	Unmodified	_GQKILSIIY_					0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.8159790039062	2	517.815867	1033.61718	1.5641	0.00080993	-1.3741	-0.00071154	0.19001	9.8392E-05	517.8150652228486	37.06	0.25677	37.06	36.914	37.171	0					8	5	2	0	0	0	0.30951	1	14468	14468		49.442	3.4693	1	437660	+		13597	21999	8880	8912	13795	13795					0.10171790516801593
GQLEKLSSPL	10	Unmodified	_GQLEKLSSPL_					0	0	0			REV__ENST00000524630.5_1_11:57585076-57585268:+|nuORF	REV__ENST00000524630.5_1_11:57585076-57585268:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.30517578125	2	536.305864	1070.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.626	1	49.626	49.126	50.126	0								0	0	0	0.26105	1	17905	17905		56.721	0	1		+		13598	19979	8881	8913	13796	13796					0.06469994786198185
GQLSVHTPK	9	Unmodified	_GQLSVHTPK_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7717590332031	2	483.771991	965.529429	0.049785	2.4085E-05	-0.6728	-0.00032548	-0.62301	-0.0003014	483.7717022760987	20.31	0.46757	20.31	19.992	20.459	0					40	15	3	0	0	0	0.26699	2	5316	5316;5471		63.534	27.916	1	339830			13599	11821	8882	8914	13797;13798	13797					0.045285896460427466
GQLSVHTPK	9	Unmodified	_GQLSVHTPK_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7720642089844	2	483.771991	965.529429	-0.1763	-8.5289E-05	-0.21157	-0.00010235	-0.38787	-0.00018764	483.77188208441135	20.65	0.78945	20.65	20.18	20.97	0					49	17	4	0	0	0	0.067603	2	6495	6327;6495		93.143	26.714	1	2394200			13600	11821	8882	8914	13799;13800	13800					0.045285896460427466
GQLSVHTPK	9	Unmodified	_GQLSVHTPK_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7745056152344	2	483.771991	965.529429	-0.6126	-0.00029636	-0.12072	-5.8399E-05	-0.73332	-0.00035476	483.7719556155956	20.404	0.50435	20.404	19.993	20.498	0					33	16	3	0	0	0	0.48469	1	5587	5587		33.922	11.962	1	250870			13601	11821	8882	8914	13801	13801					0.045285896460427466
GQLSVHTPK	9	Unmodified	_GQLSVHTPK_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.77191162109375	2	483.771991	965.529429	-0.61072	-0.00029545	-0.029359	-1.4203E-05	-0.64008	-0.00030965	483.77203431735154	20.597	0.668	20.597	20.096	20.764	0					38	13	4	0	0	0	0.099758	1	6574	6574		82.75	8.4954	1	1271500			13602	11821	8882	8914	13802	13802					0.045285896460427466
GQLYIVRQ	8	Unmodified	_GQLYIVRQ_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1;REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	326.1904602050781	3	326.190665	975.550165	0.63842	0.00020825	-1.0421	-0.00033993	-0.40371	-0.00013169	326.19028455122884	29.618	0.25756	29.618	29.527	29.784	0					12	6	3	0	0	0	0.72381	1	10607	10607		30.504	2.4222	1	303760	+		13603	13844;15829	8883	8915	13803	13803					0.06141180025713311
GQMLQPIIE	9	Unmodified	_GQMLQPIIE_					0	0	0		nc|ENSG00000031003|Q9NYF5-3|FAM13B;FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.77783203125	2	514.775885	1027.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.864	1	20.864	20.364	21.364	0								0	0	0	0.10121	1	6542	6542		71.296	7.0884	1				13604	1150	8884	8916	13804	13804					0.024549808513029348
GQMTVKDLTAK	11	Unmodified	_GQMTVKDLTAK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.3236694335938	2	596.323731	1190.63291	0.73246	0.00043678	-0.52269	-0.00031169	0.20977	0.00012509	596.3233198622878	26.331	0.17658	26.331	26.247	26.423	0					6	4	2	0	0	0	0.10641	1	9084	9084		88.134	50.626	1	177290			13605	500	8885	8917	13805	13805					0.04521708971537919
GQNIAVVGK	9	Unmodified	_GQNIAVVGK_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;ENSG00000107036|ENST00000414202|RIC1	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2611999511719	2	443.261259	884.507966	0.58063	0.00025737	1.2761	0.00056564	1.8567	0.00082301	443.2619411682038	22.893	0.54658	22.893	22.516	23.063	0					19	13	2	0	0	0	0.0073253	1	7496	7496		148.04	32.584	1	653700			13606	2467	8886	8918	13806	13806					0.061092046173257586
GQNIAVVGK	9	Unmodified	_GQNIAVVGK_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;ENSG00000107036|ENST00000414202|RIC1	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2611389160156	2	443.261259	884.507966	3.1158	0.0013811	-3.3389	-0.00148	-0.22319	-9.8932E-05	443.25959956124376	22.577	0.10686	22.577	22.511	22.618	0					5	3	2	0	0	0	0.034359	1	6676	6676		104.75	10.74	1	75210			13607	2467	8886	8918	13807	13807					0.061092046173257586
GQNIAVVGK	9	Unmodified	_GQNIAVVGK_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;ENSG00000107036|ENST00000414202|RIC1	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2608947753906	2	443.261259	884.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.787	1	22.787	22.287	23.287	0								0	0	0	0.0059899	1	7763	7763		176.41	47.55	1				13608	2467	8886	8918	13808	13808					0.061092046173257586
GQNIAVVGK	9	Unmodified	_GQNIAVVGK_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;ENSG00000107036|ENST00000414202|RIC1	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2608642578125	2	443.261259	884.507966	0.41536	0.00018411	-0.87745	-0.00038894	-0.46209	-0.00020483	443.2608897358444	22.627	0.10675	22.627	22.575	22.682	0					4	2	2	0	0	0	0.034359	1	6783	6783		104.75	22.442	1	97593			13609	2467	8886	8918	13809	13809					0.061092046173257586
GQNIAVVGK	9	Unmodified	_GQNIAVVGK_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;ENSG00000107036|ENST00000414202|RIC1	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2608337402344	2	443.261259	884.507966	-0.49737	-0.00022046	-0.2093	-9.2776E-05	-0.70667	-0.00031324	443.26108254693963	22.797	0.26828	22.797	22.688	22.956	0					10	5	3	0	0	0	0.012915	1	7623	7623		134.81	32.037	1	760550			13610	2467	8886	8918	13810	13810					0.061092046173257586
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.8098754882812	2	585.809302	1169.60405	0.34739	0.00020351	-0.33019	-0.00019343	0.017205	1.0079E-05	585.8091335858868	24.161	0.38907	24.161	23.978	24.367	0					37	12	4	0	0	0	0.067676	1	7052	7052		97.597	48.061	1	1926600			13611	11453	8887	8919	13811	13811					0.0260330766673178
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.8095703125	2	585.809302	1169.60405	0.076146	4.4607E-05	-0.072281	-4.2343E-05	0.0038643	2.2637E-06	585.8093335866905	24.446	0.53304	24.446	24.253	24.786	0					40	12	5	0	0	0	0.0010046	1	8198	8198		133.75	61.875	1	10019000			13612	11453	8887	8919	13812	13812					0.0260330766673178
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.8099365234375	2	585.809302	1169.60405	-0.3112	-0.0001823	0.36736	0.0002152	0.05616	3.2899E-05	585.8095865120947	24.185	0.42356	24.185	24.018	24.442	0					41	13	5	0	0	0	0.029346	1	7331	7331		115.23	46.386	1	2978100			13613	11453	8887	8919	13813	13813					0.0260330766673178
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.809814453125	2	585.809302	1169.60405	-0.2358	-0.00013813	0.16947	9.9275E-05	-0.066332	-3.8858E-05	585.8095346158027	24.405	0.21556	24.405	24.278	24.494	0					7	4	2	0	0	0	0.2472	1	8543	8543		68.626	22.169	1	225800			13614	11453	8887	8919	13814	13814					0.0260330766673178
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.8092041015625	2	585.809302	1169.60405	0.5467	0.00032026	-0.10187	-5.9674E-05	0.44483	0.00026059	585.8090523127349	24.226	0.32193	24.226	24.078	24.4	0					12	7	2	0	0	0	0.29287	1	7512	7512		63.426	20.562	1	175680			13615	11453	8887	8919	13815	13815					0.0260330766673178
GQPGPPGTD	9	Unmodified	_GQPGPPGTD_					0	0	0			REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.1912841796875	2	413.1905	824.366446	-2.3183	-0.00095789	2.1361	0.00088263	-0.18215	-7.5263E-05	413.1914355439472	17.039	0.17044	17.039	16.957	17.128	0					12	5	3	0	0	0	0.59802	1	4152	4152		21.96	0.25755	1	153900	+	+	13616	12560	8888	8920	13816	13816					-0.0527621347580407
GQPLSVQHD	9	Unmodified	_GQPLSVQHD_					0	0	0			REV__ENSG00000164620|ENST00000297164|RELL2	REV__ENSG00000164620|ENST00000297164|RELL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7436218261719	2	490.743431	979.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.536	1	20.536	20.036	21.036	0								0	0	0	0.30504	1	5751	5751		34.173	0	1		+		13617	15997	8889	8921	13817	13817					-0.01824877630338051
GQPQDVSVY	9	Unmodified	_GQPQDVSVY_					0	0	0			REV__ENST00000335997.11_1_X:129200182-129200299:-|nuORF	REV__ENST00000335997.11_1_X:129200182-129200299:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.73785400390625	2	496.737814	991.461075	0.7173	0.00035631	-0.93718	-0.00046553	-0.21989	-0.00010923	496.7373390871055	34.22	0.43776	34.22	34.067	34.505	0					24	11	4	0	0	0	0.13519	1	12737	12737		71.296	12.514	1	584900	+		13618	18411	8890	8922	13818	13818					-0.03499699724477523
GQPQPSVPLQ	10	Unmodified	_GQPQPSVPLQ_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7831420898438	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.482	1	34.482	33.982	34.982	0								0	0	0	0.38475	1	11273	11273		35.152	3.6222	1				13619	6044	8891	8923	13819	13819					0.027765549549030766
GQPQRILSS	9	Unmodified	_GQPQRILSS_					0	0	0		ENST00000369904.7_1_1:109822389-109822509:-|nuORF	ENST00000369904.7_1_1:109822389-109822509:-|nuORF	ENST00000369904.7_1_1:109822389-109822509:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2742919921875	2	493.274898	984.535243	0.86595	0.00042715	-1.9868	-0.00098006	-1.1209	-0.00055291	493.27377708820757	18.21	0.46215	18.21	18.06	18.522	0					13	9	3	0	0	0	0.42902	1	5424	5424		39.253	2.0937	1	1009100			13620	8949	8892	8924	13820	13820					0.04235688157723416
GQQAHANM	8	Unmodified	_GQQAHANM_					0	0	0		L1MB4_dup8350|chr19:41723212-41723669:-|1.3793009716132458|0.0459558965036179|4.91|476.0|3|1|sense	L1MB4_dup8350|chr19:41723212-41723669:-|1.3793009716132458|0.0459558965036179|4.91|476.0|3|1|sense	L1MB4_dup8350|chr19:41723212-41723669:-|1.3793009716132458|0.0459558965036179|4.91|476.0|3|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.6908874511719	2	428.690144	855.365735	0.85862	0.00036808	-1.6907	-0.00072479	-0.83209	-0.00035671	428.69035297386125	49.603	0.2241	49.603	49.468	49.692	0					28	13	3	0	0	0	0.78999	1	15507	15507		13.775	0	1	392710			13621	11271	8893	8925	13821	13821					-0.06773331396516369
GQQKIQSQQK	10	Unmodified	_GQQKIQSQQK_					0	0	0		ENSG00000120963|ENST00000311212|ZNF706;ENST00000519916.1_1_8:102213783-102213969:-|nuORF	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.8226928710938	2	586.822744	1171.63093	-0.21119	-0.00012393	0.31314	0.00018376	0.10195	5.9826E-05	586.8229721750098	12.507	0.092785	12.507	12.455	12.548	0					4	2	2	0	0	0	0.019261	1	2839	2839		125.71	48.395	1	207010			13622	3205	8894	8926	13822	13822					0.05198416277949036
GQQRQRGGAA	10	Unmodified	_GQQRQRGGAA_					0	0	0		ENST00000372469.5_1_9:132427956-132481510:+|nuORF	ENST00000372469.5_1_9:132427956-132481510:+|nuORF	ENST00000372469.5_1_9:132427956-132481510:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7725219726562	2	514.770845	1027.52714	1.3831	0.00071197	0.97694	0.0005029	2.36	0.0012149	514.7713798699754	27.069	0.71155	27.069	26.811	27.523	0					53	14	6	0	0	0	0.46215	1	9729	9729		49.442	49.442	1	10285000			13623	8976	8895	8927	13823	13823					0.014475539609520638
GQQRQRGGAA	10	Unmodified	_GQQRQRGGAA_					0	0	0		ENST00000372469.5_1_9:132427956-132481510:+|nuORF	ENST00000372469.5_1_9:132427956-132481510:+|nuORF	ENST00000372469.5_1_9:132427956-132481510:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7722778320312	2	514.770845	1027.52714	3.23	0.0016627	-1.2627	-0.00064999	1.9674	0.0010127	514.7705633688713	27.029	0.51954	27.029	26.821	27.34	0					34	10	6	0	0	0	0.46215	1	9613	9613		49.442	3.4693	1	2336500			13624	8976	8895	8927	13824	13824					0.014475539609520638
GQREGSCM	8	Carbamidomethyl (C),Oxidation (M)	_GQREGSC(Carbamidomethyl (C))M(Oxidation (M))_	GQREGSC(1)M	GQREGSCM(1)	GQREGSC(41)M	GQREGSCM(41)	0	1	1		ENST00000474064.5_1_1:45098020-45115698:+|nuORF;ENST00000475378.5_1_1:45097966-45116444:+|nuORF;ENSG00000187147|ENST00000361799|RNF220	ENST00000474064.5_1_1:45098020-45115698:+|nuORF	ENST00000474064.5_1_1:45098020-45115698:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.6840515136719	2	470.684201	939.35385	0.54877	0.0002583	-0.94768	-0.00044606	-0.39892	-0.00018776	470.68388015704613	39.293	0.72645	39.293	39.157	39.883	0					41	16	4	0	0	0	0.65276	1	15659	15659		40.573	7.057	1	2289900			13625	7185	8896	8928	13825	13825	305	289			-0.11825316201998248
GQRHPAPA	8	Unmodified	_GQRHPAPA_					0	0	0			REV__nc|ENSG00000136925|Q5T7W7-2|TSTD2	REV__nc|ENSG00000136925|Q5T7W7-2|TSTD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.2217102050781	2	417.222469	832.430384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.494	1	14.494	13.994	14.994	0								0	0	0	1.7419	1	3770	3770		26.796	0.10319	1		+		13626	18705	8897	8929	13826	13826					0.00746611471788583
GQRLCRCCVI	10	Unmodified	_GQRLCRCCVI_					0	0	0		ENST00000464990.1_1_3:33425426-33427097:+|nuORF;ENST00000422741.5_1_3:33414627-33427097:+|nuORF;ENST00000432809.5_1_3:33339416-33427097:+|nuORF;nc|ENSG00000153558|Q9UKC9-2|FBXL2;ENSG00000153558|ENST00000484457|FBXL2;ENST00000451636.5_1_3:33400471-33427097:+|nuORF	ENST00000464990.1_1_3:33425426-33427097:+|nuORF	ENST00000464990.1_1_3:33425426-33427097:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.7839965820312	2	575.785738	1149.55692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.356	1	33.356	32.856	33.856	0								0	0	0	0.4201	1	10838	10838		21.96	3.6355	1				13627	5053	8898	8930	13827	13827					-0.011872896812519684
GQRRGLAK	8	Unmodified	_GQRRGLAK_					0	0	0			REV__ENSG00000104884|ENST00000391945|ERCC2	REV__ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2738342285156	2	443.272493	884.530432	3.1152	0.0013809	-0.56155	-0.00024892	2.5537	0.001132	443.2722782819973	29.264	0.25553	29.264	29.114	29.369	0					15	10	2	0	0	0	0.7126	1	9507	9507		31.955	31.955	1	81278	+		13628	13742	8899	8931	13828	13828					0.08354848805606707
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.75592041015625	2	466.756007	931.497461	0.82041	0.00038293	-1.0176	-0.00047499	-0.19724	-9.2062E-05	466.7555501198368	22.77	0.23841	22.77	22.668	22.907	0					18	7	4	0	0	0	0.039418	1	6482	6482		99.788	37.68	1	547290			13629	2305	8900	8932	13829	13829					0.028971771722126505
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.75579833984375	2	466.756007	931.497461	0.26058	0.00012163	-0.8131	-0.00037952	-0.55252	-0.00025789	466.75560572418215	23.115	0.36045	23.115	22.98	23.34	0					21	8	4	0	0	0	0.0014418	1	7595	7595		178.55	51.086	1	3650700			13630	2305	8900	8932	13830	13830					0.028971771722126505
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.75579833984375	2	466.756007	931.497461	-0.13339	-6.2262E-05	-0.62193	-0.00029029	-0.75532	-0.00035255	466.75566543893177	23.02	0.51777	23.02	22.911	23.429	0					22	10	4	0	0	0	0.014648	1	7860	7860		131.12	40.515	1	8917200			13631	2305	8900	8932	13831	13831					0.028971771722126505
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7558898925781	2	466.756007	931.497461	-0.1867	-8.7142E-05	-0.24293	-0.00011339	-0.42963	-0.00020053	466.75592600721444	22.846	0.26834	22.846	22.75	23.019	0					15	6	4	0	0	0	0.0059342	1	6884	6884		154.01	65.834	1	1079600			13632	2305	8900	8932	13832	13832					0.028971771722126505
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.75555419921875	2	466.756007	931.497461	-0.66178	-0.00030889	-0.12557	-5.8612E-05	-0.78736	-0.0003675	466.75590209991157	22.874	0.2289	22.874	22.694	22.923	0					9	5	3	0	0	0	0.36135	1	6899	6899		45.022	9.4039	1	161280			13633	2305	8900	8932	13833	13833					0.028971771722126505
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7557373046875	2	466.756007	931.497461	-0.5025	-0.00023455	-0.060896	-2.8424E-05	-0.5634	-0.00026297	466.75595368755216	22.999	0.71368	22.999	22.889	23.602	0					27	14	3	0	0	0	0.0014418	1	7741	7741		178.55	59.805	1	12993000			13634	2305	8900	8932	13834	13834					0.028971771722126505
GQSKIPVKK	9	Unmodified	_GQSKIPVKK_					0	0	0		ANK3|p.R2745K|1|0.4|ENSG00000151150|chr10:60072647-60072647|C/T|missense_variant	ANK3|p.R2745K|1|0.4|ENSG00000151150|chr10:60072647-60072647|C/T|missense_variant	ANK3|p.R2745K|1|0.4|ENSG00000151150|chr10:60072647-60072647|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.878173828125	3	328.878198	983.612765	-0.027564	-9.0652E-06	0.058499	1.9239E-05	0.030935	1.0174E-05	328.87822965735023	27.458	0.091644	27.458	27.414	27.505	0					4	2	2	0	0	0	0.61124	1	8998	8998		17.468	3.3309	1	70883			13635	149	8901	8933	13835	13835					0.12030326093895383
GQSLESVTT	9	Unmodified	_GQSLESVTT_					0	0	0		C2CD3|p.T271_L272insTY|1|0.05|ENSG00000168014|chr11:74138861-74138862|-/GTATGT|inframe_insertion	C2CD3|p.T271_L272insTY|1|0.05|ENSG00000168014|chr11:74138861-74138862|-/GTATGT|inframe_insertion	C2CD3|p.T271_L272insTY|1|0.05|ENSG00000168014|chr11:74138861-74138862|-/GTATGT|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.230224609375	2	461.229822	920.445091	-0.70441	-0.00032489	1.3925	0.00064226	0.6881	0.00031737	461.2303631634279	17.054	0.13765	17.054	17.007	17.145	0					5	3	2	0	0	0	0.13519	1	4755	4755		71.296	0	1	255450			13636	335	8902	8934	13836	13836					-0.018314059613658173
GQSPFQQRK	9	Unmodified	_GQSPFQQRK_					0	0	0		nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6	nc|ENSG00000198055|P43250-3|GRK6	nc|ENSG00000198055|P43250-3|GRK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2864990234375	2	538.285797	1074.55704	0.81354	0.00043791	1.1371	0.00061209	1.9506	0.00105	538.2862641107619	17.625	0.14581	17.625	17.516	17.662	0					7	4	2	0	0	0	0.35021	1	4228	4228		45.972	5.9141	1	79767			13637	7525	8903	8935	13837	13837					0.022744929062810115
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__ENSG00000163913|ENST00000348417|IFT122	REV__ENSG00000163913|ENST00000348417|IFT122	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7321472167969	2	463.732532	925.45051	-2.3855	-0.0011063	1.8447	0.00085546	-0.5408	-0.00025079	463.73337525395874	17.995	0.25866	17.995	17.891	18.15	0					10	5	3	0	0	0	0.16806	1	4618	4618		65.465	7.2355	1	281030	+		13638	15933	8904	8936	13838	13838					-0.015196823789096925
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__ENSG00000163913|ENST00000348417|IFT122	REV__ENSG00000163913|ENST00000348417|IFT122	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7322998046875	2	463.732532	925.45051	0.74579	0.00034585	-1.3804	-0.00064013	-0.6346	-0.00029429	463.73180718441273	18.167	0.41175	18.167	18.06	18.471	0					16	8	3	0	0	0	0.032052	1	5374	5374		107.01	8.3781	1	4801000	+		13639	15933	8904	8936	13839	13839					-0.015196823789096925
GQSVRGQHA	9	Unmodified	_GQSVRGQHA_					0	0	0			REV__ENST00000405147.7_1_22:38014465-38015850:+|nuORF	REV__ENST00000405147.7_1_22:38014465-38015850:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.24322509765625	2	470.24139	938.468226	-1.2982	-0.00061047	2.4799	0.0011662	1.1817	0.00055569	470.2430862438502	20.68	0.23724	20.68	20.555	20.793	0					19	7	4	0	0	0	0.43426	1	5804	5804		38.806	4.6336	1	202090	+		13640	18967	8905	8937	13840	13840					-0.0034692233338091683
GQTGREEKIQ	10	Unmodified	_GQTGREEKIQ_					0	0	0		ENST00000528491.5_1_10:28821838-28824858:+|nuORF;ENST00000532233.5_1_10:28821838-28826589:+|nuORF	ENST00000528491.5_1_10:28821838-28824858:+|nuORF	ENST00000528491.5_1_10:28821838-28824858:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.3014526367188	2	573.299101	1144.58365	3.3636	0.0019283	1.0467	0.00060006	4.4102	0.0025284	573.2996810454105	23.906	0.26563	23.906	23.796	24.062	0					9	5	2	0	0	0	0.073361	1	8185	8185		101.46	8.3166	1	1720000			13641	10400	8906	8938	13841	13841					0.01714137006956662
GQTLDLLTAPQ	11	Unmodified	_GQTLDLLTAPQ_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.2131042480469	3	386.211794	1155.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.875	1	13.875	13.375	14.375	0								0	0	0	0.45674	1	3477	3477		22.562	0	1				13642	5381	8907	8939	13842	13842					0.04197075952288287
GQTNIHLSK	9	Unmodified	_GQTNIHLSK_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2742919921875	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.837	1	18.837	18.337	19.337	0								0	0	0	0.31222	1	4993	4993		32.751	6.0576	1				13643	5510	8908	8940	13843	13843					0.036836881577073655
GQTNIHLSK	9	Unmodified	_GQTNIHLSK_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.27471923828125	2	499.274898	996.535243	-0.65823	-0.00032864	1.1301	0.00056425	0.47192	0.00023562	499.2755474498313	19.058	0.11413	19.058	19.001	19.115	0					4	2	2	0	0	0	0.31937	1	5973	5973		48.602	12.155	1	341700			13644	5510	8908	8940	13844	13844					0.036836881577073655
GQTPFMRFCI	10	Unmodified	_GQTPFMRFCI_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2909545898438	2	600.288637	1198.56272	2.1031	0.0012625	0.48062	0.00028851	2.5837	0.001551	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.66185	1	17400	17400		26.693	26.693	1	67330000	+		13645	13884	8909	8941	13845	13845					-0.028618678979000833
GQTPKVAKQEK	11	Unmodified	_GQTPKVAKQEK_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.3489379882812	2	607.348594	1212.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.639	1	13.639	13.139	14.139	0								0	0	0	0.06838	1	3148	3148		82.831	29.894	1				13646	4908	8910	8942	13846	13846					0.08480159971827561
GQTPKVAKQEK	11	Unmodified	_GQTPKVAKQEK_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.3486938476562	2	607.348594	1212.68264	0.78488	0.0004767	-1.1714	-0.00071146	-0.38654	-0.00023477	607.3479181870176	13.6	0.1906	13.6	13.462	13.653	0					8	4	3	0	0	0	0.046463	1	3359	3359		106.88	57.344	1	243580			13647	4908	8910	8942	13847	13847					0.08480159971827561
GQTPKVAKQEK	11	Unmodified	_GQTPKVAKQEK_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.2346496582031	3	405.234822	1212.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.622	1	13.622	13.122	14.122	0								0	0	0	0.38672	1	3357	3357		42.243	10.208	1				13648	4908	8910	8942	13848	13848					0.08480159971827561
GQTSLDRLR	9	Unmodified	_GQTSLDRLR_					0	0	0		ENSG00000141096|ENST00000268793|DPEP3;ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-3|DPEP2	ENSG00000141096|ENST00000268793|DPEP3;ENSG00000167261|ENST00000393847|DPEP2	ENSG00000141096|ENST00000268793|DPEP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2911987304688	2	523.291079	1044.56761	0.087892	4.5993E-05	0.1252	6.5515E-05	0.21309	0.00011151	523.2911718683256	17.655	0.12836	17.655	17.568	17.696	0					5	3	2	0	0	0	0.2873	1	5024	5024		51.335	1.3019	1	590890			13649	4428;5981	8911	8943	13849	13849					0.04710475560705163
GQVQEGLVR	9	Unmodified	_GQVQEGLVR_					0	0	0			REV__NOXA1|p.L249Sfs*66|1|0.4|ENSG00000188747|chr9:137431278-137431278|C/-|frameshift_variant	REV__NOXA1|p.L249Sfs*66|1|0.4|ENSG00000188747|chr9:137431278-137431278|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.276611328125	2	493.274898	984.535243	0.77631	0.00038294	3.6583	0.0018046	4.4347	0.0021875	493.2764098731058	40.968	0.1049	40.968	40.914	41.019	0					7	4	2	0	0	0	0.48389	1	15578	15578		34.173	0	1	58543	+		13650	21300	8912	8944	13850	13850					0.04235688157723416
GQVVHLLLE	9	Unmodified	_GQVVHLLLE_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;PTPN13|p.K1535Sfs*16|1|0.38|ENSG00000163629|chr4:86769879-86769879|A/-|frameshift_variant	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342712402344	3	336.53432	1006.58113	0.24132	8.1213E-05	-0.29827	-0.00010038	-0.056945	-1.9164E-05	336.53416467024516	38.236	0.87955	38.236	37.977	38.856	0					81	51	2	0	0	0	0.61124	1	12559	12559		19.104	0	1	129980			13651	5584	8913	8945	13851	13851					0.07810333339944009
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.30078125	2	573.301113	1144.58767	1.0661	0.00061117	-0.42753	-0.00024511	0.63853	0.00036607	573.3006943777416	23.688	0.19151	23.688	23.615	23.807	0					12	6	3	0	0	0	0.037924	1	6883	6883		101.25	8.1094	1	173720			13652	5194	8914	8946	13852	13852					0.02116226500652374
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.3016357421875	2	573.301113	1144.58767	-0.12361	-7.0864E-05	0.95679	0.00054853	0.83318	0.00047766	573.301644774817	23.957	0.40228	23.957	23.863	24.265	0					21	9	4	0	0	0	0.0067848	1	8010	8010		150.36	59.992	1	1245100			13653	5194	8914	8946	13853	13853					0.02116226500652374
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.30078125	2	573.301113	1144.58767	0.072006	4.1281E-05	0.56946	0.00032647	0.64147	0.00036776	573.3013008621983	23.738	0.13622	23.738	23.669	23.805	0					10	4	3	0	0	0	0.12834	1	7167	7167		72.879	4.0331	1	233640			13654	5194	8914	8946	13854	13854					0.02116226500652374
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.3015747070312	2	573.301113	1144.58767	2.0104	0.0011526	-1.2683	-0.00072713	0.74211	0.00042545	573.300280002051	23.906	0.41749	23.906	23.796	24.213	0					19	8	3	0	0	0	0.012936	1	8311	8311		134.77	41.57	1	1028000			13655	5194	8914	8946	13855	13855					0.02116226500652374
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.3015747070312	2	573.301113	1144.58767	-1.4674	-0.00084124	2.3472	0.0013457	0.87984	0.00050442	573.3024089017463	23.786	0.22463	23.786	23.701	23.926	0					9	5	3	0	0	0	0.017421	1	7326	7326		126.24	41.082	1	230400			13656	5194	8914	8946	13856	13856					0.02116226500652374
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.808837890625	2	531.808377	1061.6022	0.368	0.0001957	0.37785	0.00020094	0.74584	0.00039665	531.8084926511735	34.099	0.77719	34.099	33.968	34.745	0					66	34	3	0	0	0	0.13519	2	11104	11104;11231		71.296	15.791	1	405320			13657	4514	8915	8947	13857;13858	13857					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8090209960938	2	531.808377	1061.6022	0.12244	6.5116E-05	0.59673	0.00031735	0.71918	0.00038246	531.8086676417721	34.311	1.3606	34.311	34.17	35.531	0					97	35	4	0	0	0	0.1115	3	12733	12733;12893;13073		76.774	68.787	1	2908200			13658	4514	8915	8947	13859;13860;13861	13859					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.8087158203125	2	531.808377	1061.6022	-0.23288	-0.00012385	1.6874	0.00089737	1.4545	0.00077352	531.809150809826	34.128	0.56989	34.128	34.03	34.6	0					41	24	3	0	0	0	0.47038	1	11489	11489		35.618	2.8059	1	172550			13659	4514	8915	8947	13862	13862					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.8093872070312	2	531.808377	1061.6022	1.7171	0.00091315	-0.42066	-0.00022371	1.2964	0.00068944	531.8080804649795	34.307	1.29	34.307	34.213	35.503	0					79	35	4	0	0	0	0.22377	1	13205	13205		58.782	24.609	1	1607900			13660	4514	8915	8947	13863	13863					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.8089599609375	2	531.808377	1061.6022	0.28831	0.00015333	0.49485	0.00026316	0.78316	0.00041649	531.8086541345032	34.331	1.1815	34.331	34.201	35.382	0					65	32	3	0	0	0	0.036372	1	13196	13196		102.77	47.269	1	1443600			13661	4514	8915	8947	13864	13864					0.0738634343947524
GQYAYPVEQP	10	Unmodified	_GQYAYPVEQP_					0	0	0			REV__nc|ENSG00000134216|Q9BZP6-3|CHIA	REV__nc|ENSG00000134216|Q9BZP6-3|CHIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	384.5163879394531	3	384.517106	1150.52949	-1.1649	-0.00044792	-0.37098	-0.00014265	-1.5359	-0.00059057	384.51708790622956	15.839	0.086853	15.839	15.786	15.872	0					6	3	2	0	0	0	0.74461	1	3694	3694		9.6461	0	1	75883	+		13662	14730	8916	8948	13865	13865					-0.039754551446321784
GQYGETLSLL	10	Unmodified	_GQYGETLSLL_					0	0	0		ENST00000442007.1_1_6:73985509-73985899:+|nuORF	ENST00000442007.1_1_6:73985509-73985899:+|nuORF	ENST00000442007.1_1_6:73985509-73985899:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7815551757812	2	540.782222	1079.54989	-1.482	-0.00080143	-0.28217	-0.00015259	-1.7641	-0.00095402	540.7818643508316	24.579	0.35926	24.579	24.455	24.814	0					19	8	3	0	0	0	0.61187	1	7656	7656		32.812	1.2826	1	243200			13663	9585	8917	8949	13866	13866					0.013297155152031337
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant;ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.75347900390625	2	495.753798	989.493044	-0.06233	-3.09E-05	-0.0048667	-2.4127E-06	-0.067197	-3.3313E-05	495.7537785245524	24.941	0.48125	24.941	24.605	25.087	0					34	14	3	0	0	0	0.20551	1	7361	7361		60.972	25.354	1	479760			13664	47	8918	8950	13867	13867					-0.0021228725066748666
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant;ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7537536621094	2	495.753798	989.493044	-0.37833	-0.00018756	0.82832	0.00041064	0.44999	0.00022308	495.7543104367244	25.169	0.89169	25.169	24.852	25.744	0					58	21	4	0	0	0	0.037569	1	8501	8501		101.6	30.305	1	2626300			13665	47	8918	8950	13868	13868					-0.0021228725066748666
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant;ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7538146972656	2	495.753798	989.493044	0.72357	0.00035871	-0.652	-0.00032323	0.071574	3.5483E-05	495.75365615216634	25.197	1.6396	25.197	24.545	26.185	0					71	31	5	0	0	0	0.034359	2	8806	8806;8971		104.75	43.775	1	15793000			13666	47	8918	8950	13869;13870	13869					-0.0021228725066748666
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant;ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.75347900390625	2	495.753798	989.493044	0.10995	5.451E-05	-0.46413	-0.0002301	-0.35418	-0.00017559	495.7536358363542	25.024	0.62081	25.024	24.689	25.31	0					42	14	4	0	0	0	0.030949	2	7955	7791;7955		108.09	22.728	1	1778800			13667	47	8918	8950	13871;13872	13872					-0.0021228725066748666
GQYLLGAALG	10	Unmodified	_GQYLLGAALG_					0	0	0			REV__ENSG00000162461|ENST00000294454|SLC25A34	REV__ENSG00000162461|ENST00000294454|SLC25A34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7703552246094	2	481.768917	961.523281	0.13108	6.3148E-05	3.0665	0.0014774	3.1976	0.0015405	481.7704994289118	32.219	0.11504	32.219	32.15	32.265	0					5	3	2	0	0	0	0.22138	1	11173	11173		76.847	29.189	1	47072	+		13668	15815	8919	8951	13873	13873					0.040980714145121055
GRAATMTD	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GRAATMTD_					1	0	0			REV__ENST00000380752.9_1_13:30087970-30088375:-|nuORF	REV__ENST00000380752.9_1_13:30087970-30088375:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.6977844238281	2	432.697635	863.380716	-0.2583	-0.00011177	0.67699	0.00029293	0.41868	0.00018116	432.69791006234607	31.586	0.27482	31.586	31.482	31.757	0					21	12	2	0	0	0	0.5676	1	10144	10144		53.351	7.3995	1	429780	+		13669	18774	8920	8952	13874	13874					-0.05643884319181325
GRAATMTD	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))GRAATM(Oxidation (M))TD_		GRAATM(1)TD		GRAATM(69)TD	1	0	1			REV__ENST00000380752.9_1_13:30087970-30088375:-|nuORF	REV__ENST00000380752.9_1_13:30087970-30088375:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.6952209472656	2	440.695092	879.375631	0.5534	0.00024388	-0.11752	-5.1791E-05	0.43588	0.00019209	440.6950080333267	27.906	1.4133	27.906	27.798	29.211	0					67	29	5	0	0	0	0.41701	1	10172	10172		68.787	15.435	1	14994000	+		13670	18774	8920	8953	13875	13875		694			-0.06888188181790156
GRAATMTD	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))GRAATM(Oxidation (M))TD_		GRAATM(1)TD		GRAATM(61)TD	1	0	1			REV__ENST00000380752.9_1_13:30087970-30088375:-|nuORF	REV__ENST00000380752.9_1_13:30087970-30088375:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.6951599121094	2	440.695092	879.375631	-0.5604	-0.00024697	1.0244	0.00045146	0.46403	0.0002045	440.695490272432	27.748	0.34546	27.748	27.658	28.003	0					13	8	2	0	0	0	0.49216	1	9109	9109		60.972	7.6205	1	340700	+		13671	18774	8920	8953	13876	13876		694			-0.06888188181790156
GRAGWAPS	8	Unmodified	_GRAGWAPS_					0	0	0		ENST00000314485.11_2_1:160068207-160068342:-|nuORF	ENST00000314485.11_2_1:160068207-160068342:-|nuORF	ENST00000314485.11_2_1:160068207-160068342:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2043762207031	2	401.203744	800.392936	0.94148	0.00037772	0.82395	0.00033057	1.7654	0.0007083	401.2039451814385	35.349	0.3518	35.349	35.228	35.58	0					17	9	3	0	0	0	0.65276	1	13244	13244		40.573	7.057	1	374870			13672	8576	8921	8954	13877	13877					-0.015244797938180454
GRAGWAPS	8	Unmodified	_GRAGWAPS_					0	0	0		ENST00000314485.11_2_1:160068207-160068342:-|nuORF	ENST00000314485.11_2_1:160068207-160068342:-|nuORF	ENST00000314485.11_2_1:160068207-160068342:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.204345703125	2	401.203744	800.392936	-0.6039	-0.00024229	3.7689	0.0015121	3.165	0.0012698	401.20456999404485	35.315	0.37164	35.315	35.129	35.501	0					13	7	3	0	0	0	0.65276	1	13623	13623		40.573	7.057	1	171990			13673	8576	8921	8954	13878	13878					-0.015244797938180454
GRAHNELVRLP	11	Unmodified	_GRAHNELVRLP_					0	0	0			REV__nc|ENSG00000138674|O94979-5|SEC31A	REV__nc|ENSG00000138674|O94979-5|SEC31A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.3571166992188	2	631.359828	1260.7051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.471	1	20.471	19.971	20.971	0								0	0	0	0.43542	1	5484	5484		29.17	3.596	1		+		13674	14993	8922	8955	13879	13879					0.08517804160146625
GRAKEELF	8	Unmodified	_GRAKEELF_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.25860595703125	2	475.258717	948.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.389	1	23.389	22.889	23.889	0								0	0	0	1.7419	1	7130	7130		42.474	7.2737	1		+		13675	13192	8923	8956	13880	13880					0.02656900754709568
GRAQGRGGQA	10	Unmodified	_GRAQGRGGQA_					0	0	0		ENSG00000107829|ENST00000331272|FBXW4;FBXW4|p.P292Qfs*86|1|0.46|ENSG00000107829|chr10:101612444-101612444|A/-|frameshift_variant	ENSG00000107829|ENST00000331272|FBXW4	ENSG00000107829|ENST00000331272|FBXW4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.25408935546875	2	479.252289	956.490024	3.457	0.0016568	-0.79335	-0.00038022	2.6636	0.0012766	479.2517943586182	26.229	0.23587	26.229	26.063	26.299	0					13	7	2	0	0	0	0.65213	1	8170	8170		27.882	0	1	119730			13676	2497	8924	8957	13881	13881					0.010038824151934023
GRARDAIL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GRARDAIL_					1	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.26416015625	2	457.264333	912.514114	0.76573	0.00035014	-0.36798	-0.00016826	0.39775	0.00018188	457.2641378586589	47.35	0.83438	47.35	47.173	48.007	0					61	51	2	0	0	0	0.65276	1	17361	17361		40.573	14.999	1	76236			13677	2244	8925	8958	13882	13882					0.05435722848858404
GRARLPNGDTY	11	Unmodified	_GRARLPNGDTY_					0	0	0		ENST00000493019.1_1_21:43906458-43916296:-|nuORF;ENSG00000160188|ENST00000291536|RSPH1	ENST00000493019.1_1_21:43906458-43916296:-|nuORF	ENST00000493019.1_1_21:43906458-43916296:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	610.3147583007812	2	610.312543	1218.61053	2.9367	0.0017923	0.5957	0.00036357	3.5324	0.0021558	610.3130248633561	25.238	0.51999	25.238	25.028	25.548	0					26	10	4	0	0	0	0.52595	1	8822	8822		19.104	19.104	1	1009200			13678	5342	8926	8959	13883	13883					0.009972456181458256
GRASRAALVA	10	Unmodified	_GRASRAALVA_					0	0	0			REV__nc|ENSG00000162976|Q8N755-2|SLC66A3	REV__nc|ENSG00000162976|Q8N755-2|SLC66A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.29315185546875	2	486.290882	970.567212	0.69067	0.00033587	3.0278	0.0014724	3.7184	0.0018082	486.2929717593197	34.357	0.59692	34.357	34.105	34.702	0					34	15	3	0	0	0	0.49411	1	12924	12924		45.972	1.8554	1	198530	+		13679	15850	8927	8960	13884	13884					0.08075100631504029
GRCEPEQG	8	Unmodified	_GRCEPEQG_					0	0	0			REV__ENST00000291825.11_2_19:40904515-40914122:-|nuORF	REV__ENST00000291825.11_2_19:40904515-40914122:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.1876525878906	2	438.187434	874.360315	0.68534	0.00030031	-0.33193	-0.00014545	0.35342	0.00015486	438.1872227393117	46.091	0.39207	46.091	45.919	46.311	0					23	18	2	0	0	0	0.78142	1	18405	18405		23.042	1.0826	1	661000	+		13680	18162	8928	8961	13885	13885					-0.08189054978981858
GRCVSPDT	8	Unmodified	_GRCVSPDT_					0	0	0		MEGF11|p.G421Afs*41|1|0.41|ENSG00000157890|chr15:65957572-65957572|C/-|frameshift_variant;MEGF11|p.G599Wfs*42|1|0.13|ENSG00000157890|chr15:65922851-65922852|-/G|frameshift_variant;nc|ENSG00000157890|A6BM72-3|MEGF11;nc|ENSG00000157890|A6BM72-2|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11	MEGF11|p.G421Afs*41|1|0.41|ENSG00000157890|chr15:65957572-65957572|C/-|frameshift_variant	MEGF11|p.G421Afs*41|1|0.41|ENSG00000157890|chr15:65957572-65957572|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.6923828125	2	417.692352	833.370152	0.94187	0.00039341	0.10433	4.3577E-05	1.0462	0.00043699	417.6923628892953	39.793	0.32258	39.793	39.703	40.026	0					14	11	2	0	0	0	0.72381	1	15686	15686		30.504	1.3541	1	73348			13681	5236	8929	8962	13886	13886					-0.05319866973616172
GRDGTRFCH	9	Carbamidomethyl (C)	_GRDGTRFC(Carbamidomethyl (C))H_	GRDGTRFC(1)H		GRDGTRFC(46)H		0	1	0		ENSG00000143512|ENST00000343410|HHIPL2;HHIPL2|p.L457*|1|0.39|ENSG00000143512|chr1:222540090-222540090|A/-|frameshift_variant	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.251953125	2	553.251431	1104.48831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.683	1	28.683	28.183	29.183	0								0	0	0	0.23111	1	9270	9270		46.457	8.6453	1				13682	4561	8930	8963	13887	13887	193				-0.059754946650855345
GRDPQGAM	8	Oxidation (M)	_GRDPQGAM(Oxidation (M))_		GRDPQGAM(1)		GRDPQGAM(48)	0	0	1		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.188232421875	2	424.189977	846.365401	-2.6441	-0.0011216	-1.4372	-0.00060963	-4.0813	-0.0017312	424.1893988976958	17.995	0.34366	17.995	17.891	18.235	0					13	7	3	0	0	0	0.60719	1	4617	4617		47.916	7.343	1	344380			13683	5393	8931	8964	13888	13888		217			-0.06392751116345607
GRDQVASVF	9	Unmodified	_GRDQVASVF_					0	0	0		ENSG00000181693|ENST00000641600|OR8H1;ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181693|ENST00000641600|OR8H1	ENSG00000181693|ENST00000641600|OR8H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7554626464844	2	489.753798	977.493044	2.6386	0.0012923	1.1793	0.00057756	3.8179	0.0018698	489.7543507828863	41.351	0.262	41.351	41.256	41.518	0					12	6	3	0	0	0	0.30951	1	16454	16454		49.442	0	1	198910			13684	6861	8932	8965	13889	13889					0.003397127493371954
GRFDVKIK	8	Unmodified	_GRFDVKIK_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.79241943359375	2	481.792727	961.5709	-0.10514	-5.0655E-05	-0.36014	-0.00017351	-0.46528	-0.00022417	481.7925441601989	20.938	0.16505	20.938	20.88	21.045	0					5	3	2	0	0	0	0.73426	1	6878	6878		29.15	2.3535	1	128760			13685	11558	8933	8966	13890	13890					0.08857770405359133
GRFGGREGRFN	11	Unmodified	_GRFGGREGRFN_					0	0	0			REV__ENSG00000145388|ENST00000388822|METTL14	REV__ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	626.8172607421875	2	626.818327	1251.6221	-2.1395	-0.0013411	0.16753	0.00010501	-1.9719	-0.001236	626.8183992249075	31.471	0.13494	31.471	31.42	31.555	0					7	3	3	0	0	0	0.53842	1	10847	10847		41.427	7.505	1	118880	+		13686	15271	8934	8967	13891	13891					0.006354874321232273
GRFLNILKR	9	Unmodified	_GRFLNILKR_					0	0	0			REV__SLC25A51|p.I285Hfs*7|1|0.38|ENSG00000122696|chr9:37887699-37887700|-/C|frameshift_variant	REV__SLC25A51|p.I285Hfs*7|1|0.38|ENSG00000122696|chr9:37887699-37887700|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.90423583984375	3	372.904859	1115.69275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.302	1	29.302	28.802	29.802	0								0	0	0	0.34845	1	9528	9528		25.574	4.7369	1		+		13687	14339	8935	8968	13892	13892					0.13952812487764277
GRFVAWCL	8	Unmodified	_GRFVAWCL_					0	0	0			REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2425231933594	2	476.247098	950.479642	-2.7414	-0.0013056	0.67311	0.00032057	-2.0683	-0.00098503	476.2473713541814	26.117	0.56863	26.117	25.72	26.289	0					16	11	2	0	0	0	0.61433	1	8313	8313		46.766	5.9883	1	143020	+		13688	17988	8936	8969	13893	13893					0.0024218343638722217
GRFVKVGEAI	10	Unmodified	_GRFVKVGEAI_					0	0	0		CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant	CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3175659179688	2	538.316566	1074.61858	1.4632	0.00078764	-0.48475	-0.00026095	0.97841	0.0005267	538.316340738586	25.395	0.10142	25.395	25.337	25.438	0					6	4	2	0	0	0	0.72769	1	7643	7643		3.41	0	1	57616			13689	709	8937	8970	13894	13894					0.0842542460554796
GRGETYPCVY	10	Unmodified	_GRGETYPCVY_					0	0	0		ENST00000517517.1_1_8:103244498-103250973:-|nuORF	ENST00000517517.1_1_8:103244498-103250973:-|nuORF	ENST00000517517.1_1_8:103244498-103250973:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.7583618164062	2	572.758223	1143.50189	1.0764	0.00061649	-0.098918	-5.6656E-05	0.97744	0.00055983	572.7582172290851	31.201	0.52917	31.201	31.086	31.616	0					52	21	3	0	0	0	0.65213	1	9995	9995		27.882	2.3082	1	122350			13690	10271	8938	8971	13895	13895					-0.06411681676513581
GRGFDSLNR	9	Unmodified	_GRGFDSLNR_					0	0	0			REV__ENST00000494624.1_1_X:100872054-100872120:-|nuORF	REV__ENST00000494624.1_1_X:100872054-100872120:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.263671875	2	511.262322	1020.51009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.827	1	11.827	11.327	12.327	0								0	0	0	0.37233	1	2368	2368		19.104	1.7386	1		+		13691	19753	8939	8972	13896	13896					0.0006563335514329083
GRGFKKKSV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GRGFKKKSV_					1	0	0		ZNF667|p.V297_V298insTF|1|0.04|ENSG00000198046|chr19:56442104-56442105|-/AATGTG|inframe_insertion;ENSG00000198046|ENST00000504904|ZNF667	ZNF667|p.V297_V298insTF|1|0.04|ENSG00000198046|chr19:56442104-56442105|-/AATGTG|inframe_insertion	ZNF667|p.V297_V298insTF|1|0.04|ENSG00000198046|chr19:56442104-56442105|-/AATGTG|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.2135009765625	3	350.213581	1047.61891	-0.82178	-0.0002878	0.64717	0.00022665	-0.1746	-6.1149E-05	350.213790871893	18.069	0.11195	18.069	17.989	18.101	0					6	3	2	0	0	0	0.33044	1	4652	4652		47.657	12.505	1	376860			13692	7523	8940	8973	13897	13897					0.0970084432542535
GRGKHKQK	8	Unmodified	_GRGKHKQK_					0	0	0			REV__ENST00000528363.5_1_11:2975753-2985939:-|nuORF	REV__ENST00000528363.5_1_11:2975753-2985939:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.78668212890625	2	469.785767	937.556982	2.5523	0.0011991	-0.54281	-0.000255	2.0095	0.00094405	469.78545105152915	23.709	0.31187	23.709	23.602	23.914	0					20	6	4	0	0	0	0.60719	1	8086	8086		47.916	47.916	1	3496000	+		13693	17111	8941	8974	13898	13898					0.08570537696937208
GRGSKVASGTK	11	Unmodified	_GRGSKVASGTK_					0	0	0		ENST00000520319.1_1_17:41960558-41984643:-|nuORF	ENST00000520319.1_1_17:41960558-41984643:-|nuORF	ENST00000520319.1_1_17:41960558-41984643:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.301025390625	2	524.298904	1046.58326	3.4307	0.0017987	0.38951	0.00020422	3.8202	0.0020029	524.2990604452808	14.18	0.22126	14.18	14.12	14.341	0					12	4	4	0	0	0	0.34233	1	3483	3483		56.632	12.515	1	941900			13694	10297	8942	8975	13899	13899					0.06182762077764892
GRHRIVVPH	9	Unmodified	_GRHRIVVPH_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D;ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant;ATP10D|p.L863*|1|0.21|ENSG00000145246|chr4:47560990-47560990|T/-|frameshift_variant;ATP10D|p.L863Ffs*3|1|0.28|ENSG00000145246|chr4:47560989-47560990|-/T|frameshift_variant;ATP10D|p.L1148*|1|0.28|ENSG00000145246|chr4:47576846-47576846|T/-|frameshift_variant;ATP10D|p.M414Wfs*10|1|0.3|ENSG00000145246|chr4:47536777-47536777|A/-|frameshift_variant	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.2048645019531	3	357.549186	1069.62573	0.30419	0.00010876	-1.3536	-0.00048398	-1.0494	-0.00037521	357.5486196722648	16.038	0.16718	16.038	15.93	16.097	0					7	3	3	0	0	0	0.61124	1	4473	4473		9.1829	0.48922	1	258170			13695	4662	8943	8976	13900	13900					0.09370201996648575
GRIAAEHCIP	10	Unmodified	_GRIAAEHCIP_					0	0	0		XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant;ENSG00000132953|ENST00000255305|XPO4	XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant	XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7797241210938	2	533.776751	1065.53895	3.3888	0.0018089	1.3112	0.00069989	4.7001	0.0025088	533.7771859108929	31.83	0.4623	31.83	31.537	32	0					14	9	2	0	0	0	0.52707	1	11959	11959		42.396	3.1433	1	774590			13696	3826	8944	8977	13901	13901					0.008800346599173281
GRIAYISSK	9	Unmodified	_GRIAYISSK_					0	0	0		ENSG00000152270|ENST00000282096|PDE3B;nc|ENSG00000152270|Q13370-2|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.194091796875	3	332.194186	993.56073	-0.66774	-0.00022182	0.447	0.00014849	-0.22074	-7.3329E-05	332.1943291682847	29.333	0.23662	29.333	29.254	29.491	0					24	9	4	0	0	0	0.57706	1	9538	9538		31.53	0	1	433170			13697	5007	8945	8978	13902	13902					0.06369162680141471
GRICRLPPL	9	Unmodified	_GRICRLPPL_					0	0	0			REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF	REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.8090209960938	2	512.807854	1023.60115	-0.063093	-3.2355E-05	1.6744	0.00085865	1.6113	0.00082629	512.8089181424383	11.367	0.088717	11.367	11.313	11.402	0					9	5	2	0	0	0	0.61124	1	2125	2125		7.6903	0	1	101460	+		13698	18514	8946	8979	13903	13903					0.09029805798911639
GRIVVKTSAS	10	Unmodified	_GRIVVKTSAS_					0	0	0			REV__nc|ENSG00000016864|Q68CQ7-2|GLT8D1	REV__nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3069763183594	2	509.306198	1016.59784	-0.11022	-5.6135E-05	0.32304	0.00016453	0.21282	0.00010839	509.30674489994675	52.418	0.13177	52.418	52.345	52.477	0					11	8	2	0	0	0	0.72769	1	16095	16095		17.468	0.10304	1	67381	+		13699	12927	8947	8980	13904	13904					0.09020834225907493
GRKASALSDQ	10	Unmodified	_GRKASALSDQ_					0	0	0			REV__SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant	REV__SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7752075195312	2	516.775262	1031.53597	0.82612	0.00042692	1.5759	0.00081441	2.4021	0.0012413	516.7761843850096	32.624	0.27067	32.624	32.504	32.774	0					12	8	2	0	0	0	0.4758	1	11352	11352		47.96	3.5823	1	97346	+		13700	16515	8948	8981	13905	13905					0.021464828067337294
GRKGTLPPAS	10	Unmodified	_GRKGTLPPAS_					0	0	0			REV__PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	REV__PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2850036621094	2	492.285266	982.555979	-0.60351	-0.0002971	0.5015	0.00024688	-0.10201	-5.0218E-05	492.28530783747397	53.655	0.16413	53.655	53.586	53.75	0					16	10	2	0	0	0	0.63851	1	18843	18843		18.262	1.7889	1	64766	+		13701	13515	8949	8982	13906	13906					0.06400278537364557
GRKPAPAP	8	Unmodified	_GRKPAPAP_					0	0	0			REV__ENSG00000129028|ENST00000249861|THAP10	REV__ENSG00000129028|ENST00000249861|THAP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.23748779296875	2	397.237587	792.460622	0.65207	0.00025903	-0.83171	-0.00033038	-0.17964	-7.136E-05	397.2372238199785	22.261	0.51309	22.261	22.054	22.567	0					24	10	4	0	0	0	0.79293	1	7496	7496		15.636	0.97212	1	6909600	+		13702	14536	8950	8983	13907	13907					0.05608970136972857
GRKPAPAP	8	Unmodified	_GRKPAPAP_					0	0	0			REV__ENSG00000129028|ENST00000249861|THAP10	REV__ENSG00000129028|ENST00000249861|THAP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.2375793457031	2	397.237587	792.460622	0.38146	0.00015153	-0.56722	-0.00022532	-0.18576	-7.3792E-05	397.2373697243631	22.243	0.26534	22.243	22.071	22.337	0					11	5	3	0	0	0	0.79293	1	7399	7399		15.636	0.97212	1	901560	+		13703	14536	8950	8983	13908	13908					0.05608970136972857
GRLDGGPFTL	10	Unmodified	_GRLDGGPFTL_					0	0	0			REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF	REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.776123046875	2	516.777274	1031.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.787	1	32.787	32.287	33.287	0								0	0	0	0.21707	1	12393	12393		62.107	4.2961	1		+		13704	18063	8951	8984	13909	13909					0.025485723004976535
GRLDLATQSL	10	Unmodified	_GRLDLATQSL_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45;ENST00000583383.5_1_17:79981501-79983267:+|nuORF	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3013305664062	2	537.301113	1072.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.677	1	29.677	29.177	30.177	0								0	0	0	0.40797	1	9390	9390		28.081	4.5588	1				13705	6174	8952	8985	13910	13910					0.054282265006804664
GRLDRSTDL	9	Unmodified	_GRLDRSTDL_					0	0	0			REV__ENST00000371833.3_1_1:49224889-49227061:-|nuORF	REV__ENST00000371833.3_1_1:49224889-49227061:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.776611328125	2	516.775262	1031.53597	-0.0068328	-3.531E-06	2.7527	0.0014225	2.7459	0.001419	516.776594348906	32.633	0.25249	32.633	32.464	32.716	0					14	10	2	0	0	0	0.40353	1	10888	10888		41.427	2.1738	1	101700	+		13706	18657	8953	8986	13911	13911					0.021464828067564667
GRLGGRWR	8	Unmodified	_GRLGGRWR_					0	0	0			REV__ENST00000298838.10_3_11:47203991-47204593:-|nuORF	REV__ENST00000298838.10_3_11:47203991-47204593:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2769775390625	2	479.278109	956.541666	0.46266	0.00022174	-2.0081	-0.00096246	-1.5455	-0.00074072	479.27711857100394	16.456	0.22789	16.456	16.362	16.59	0					11	5	3	0	0	0	0.7126	1	4477	4477		31.955	1.6371	1	139920	+		13707	18193	8954	8987	13912	13912					0.06165670899747511
GRLGSGVPVAR	11	Unmodified	_GRLGSGVPVAR_					0	0	0			REV__TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	REV__TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.88043212890625	3	356.880602	1067.61998	-0.058859	-2.1006E-05	-0.37108	-0.00013243	-0.42994	-0.00015344	356.88045662198505	14.214	0.17027	14.214	14.103	14.273	0					8	3	3	0	0	0	0.69524	1	3499	3499		31.068	4.0208	1	207530	+		13708	13004	8955	8988	13913	13913					0.08887058694313055
GRLHRKTF	8	Unmodified	_GRLHRKTF_					0	0	0		ENST00000313732.8_1_16:85009430-85009634:-|nuORF	ENST00000313732.8_1_16:85009430-85009634:-|nuORF	ENST00000313732.8_1_16:85009430-85009634:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.86956787109375	3	338.870037	1013.58828	-0.050529	-1.7123E-05	-1.7864	-0.00060536	-1.8369	-0.00062249	338.869473922922	15.162	0.079956	15.162	15.112	15.191	0					6	3	2	0	0	0	0.75243	1	3338	3338		21.96	0	1	147080			13709	8571	8956	8989	13914	13914					0.08203110731028573
GRLKWQAPCPT	11	Unmodified	_GRLKWQAPCPT_					0	0	0			REV__NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant	REV__NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	628.8319702148438	2	628.832057	1255.64956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.576	1	34.576	34.076	35.076	0								0	0	0	0.36657	1	11310	11310		42.864	5.0528	1		+		13710	21278	8957	8990	13915	13915					0.03196254648150898
GRLLQLEPL	9	Unmodified	_GRLLQLEPL_					0	0	0			REV__ENSG00000006555|ENST00000371276|TTC22	REV__ENSG00000006555|ENST00000371276|TTC22	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.8194580078125	2	519.818941	1037.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.748	1	43.748	43.248	44.248	0								0	0	0	0.33029	1	16471	16471		29.15	2.3535	1		+		13711	12855	8958	8991	13916	13916					0.10602308748298128
GRLRRAEH	8	Unmodified	_GRLRRAEH_					0	0	0			REV__ENST00000490689.3_1_3:157815575-157815770:-|nuORF	REV__ENST00000490689.3_1_3:157815575-157815770:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7848205566406	2	497.786299	993.558044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.86	1	12.86	12.36	13.36	0								0	0	0	1.7419	1	2997	2997		20.482	0	1		+		13712	19712	8959	8992	13917	13917					0.06100752065844972
GRMDIIVTF	9	Unmodified	_GRMDIIVTF_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7864379882812	2	526.283877	1050.5532	1.6278	0.00085671	-1.1844	-0.00062334	0.44342	0.00023336	526.2835624902618	43.519	0.65063	43.519	43.283	43.934	0					27	16	3	0	0	0	0.13519	1	17401	17401		71.296	17.944	1	87284	+		13713	15737	8960	8993	13918	13918					0.029946870881985888
GRMHAPGKGL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GRMHAPGKGL_					1	0	0		ENST00000528074.1_1_11:17098819-17099188:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13	ENST00000528074.1_1_11:17098819-17099188:-|nuORF	ENST00000528074.1_1_11:17098819-17099188:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.28759765625	2	533.284743	1064.55493	0.43781	0.00023348	4.2384	0.0022603	4.6762	0.0024938	533.2870684434826	27.813	0.10488	27.813	27.742	27.847	0					6	3	2	0	0	0	0.52707	1	8626	8626		42.396	11.892	1	64884			13714	2635	8961	8994	13919	13919					0.025237408968223463
GRNPLPPDGQW	11	Unmodified	_GRNPLPPDGQW_					0	0	0			REV__ENST00000339488.8_2_6:48036008-48036398:-|nuORF	REV__ENST00000339488.8_2_6:48036008-48036398:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	618.8109130859375	2	618.809636	1235.60472	3.0704	0.0019	-0.92878	-0.00057474	2.1416	0.0013253	618.8092558810201	42.404	0.18777	42.404	42.323	42.511	0					8	5	2	0	0	0	0.65797	1	16927	16927		31.634	1.3165	1	81966	+		13715	18441	8962	8995	13920	13920					-0.003658528935375216
GRNSYDMP	8	Unmodified	_GRNSYDMP_					0	0	0			REV__ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	REV__ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2032470703125	2	470.203084	938.391615	-0.9077	-0.0004268	1.1459	0.00053881	0.23822	0.00011201	470.20373068613776	15.364	0.20749	15.364	15.259	15.467	0					6	4	2	0	0	0	0.79426	1	4197	4197		16.473	3.514	1	243570	+		13716	12094	8963	8996	13921	13921					-0.0800448194488581
GRPGLALNVY	10	Unmodified	_GRPGLALNVY_					0	0	0			REV__nc|ENSG00000004777|O14559-10|ARHGAP33	REV__nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.3013305664062	2	530.300916	1058.58728	-1.2021	-0.00063745	2.3449	0.0012435	1.1429	0.00060607	530.3021492720382	32.798	0.16668	32.798	32.683	32.85	0					6	4	2	0	0	0	0.51121	1	11452	11452		44.117	3.3386	1	67701	+		13717	12827	8964	8997	13922	13922					0.06032851571490028
GRPGLFGPLGP	11	Unmodified	_GRPGLFGPLGP_					0	0	0			REV__ENST00000341807.8_1_8:139601498-139734429:-|nuORF	REV__ENST00000341807.8_1_8:139601498-139734429:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.3041381835938	2	534.303458	1066.59236	-1.3291	-0.00071013	1.9631	0.0010489	0.63402	0.00033876	534.304825942976	33.521	0.16496	33.521	33.404	33.569	0					8	4	3	0	0	0	0.61618	1	11766	11766		35.618	3.6634	1	276370	+		13718	16314	8965	8998	13923	13923					0.061731554340894945
GRPVQRVGH	9	Unmodified	_GRPVQRVGH_					0	0	0			REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF	REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2903747558594	2	503.288674	1004.5628	2.9291	0.0014742	0.19163	9.6446E-05	3.1207	0.0015706	503.2886737926471	35.007	0.66652	35.007	34.8	35.466	0					41	13	4	0	0	0	0.37197	1	13483	13483		44.117	8.4985	1	5049300	+		13719	20533	8966	8999	13924	13924					0.06069636208610518
GRPWRPLSGGP	11	Unmodified	_GRPWRPLSGGP_					0	0	0			REV__ENST00000495828.1_1_1:44804991-44820908:-|nuORF	REV__ENST00000495828.1_1_1:44804991-44820908:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.3221435546875	2	590.322714	1178.63087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.908	1	39.908	39.408	40.408	0								0	0	0	0.43542	1	12932	12932		29.17	2.4771	1		+		13720	19766	8967	9000	13925	13925					0.04870461068571785
GRQPRARQ	8	Unmodified	_GRQPRARQ_					0	0	0			REV__ENST00000533444.1_1_8:145150083-145150443:+|nuORF	REV__ENST00000533444.1_1_8:145150083-145150443:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.77935791015625	2	484.778474	967.542394	-0.7077	-0.00034308	2.1029	0.0010194	1.3952	0.00067637	484.7797528881924	13.677	0.058901	13.677	13.634	13.693	0					6	3	2	0	0	0	0.75243	1	2846	2846		26.796	0.10319	1	46823	+		13721	20083	8968	9001	13926	13926					0.057324655487946075
GRQSTKPSNN	10	Unmodified	_GRQSTKPSNN_					0	0	0			REV__ENST00000278460.11_1_11:47183282-47183486:+|nuORF	REV__ENST00000278460.11_1_11:47183282-47183486:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7743530273438	2	544.775793	1087.53703	0.37509	0.00020434	-0.22162	-0.00012073	0.15347	8.3609E-05	544.7757527180578	37.067	0.22268	37.067	36.996	37.219	0					11	6	2	0	0	0	0.39827	1	14017	14017		56.434	0	1	116250	+		13722	18125	8969	9002	13927	13927					-0.003233028243357694
GRRAGLSF	8	Unmodified	_GRRAGLSF_					0	0	0			REV__ENST00000584923.1_1_17:19091605-19091887:+|nuORF	REV__ENST00000584923.1_1_17:19091605-19091887:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2449035644531	2	432.245944	862.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.659	1	24.659	24.159	25.159	0								0	0	0	1.7419	1	8329	8329		26.796	5.8492	1		+		13723	20384	8970	9003	13928	13928					0.04059471022935668
GRREERPDSG	10	Unmodified	_GRREERPDSG_					0	0	0		ENST00000318291.4_1_12:752314-752692:+|nuORF	ENST00000318291.4_1_12:752314-752692:+|nuORF	ENST00000318291.4_1_12:752314-752692:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.7843017578125	2	579.78415	1157.55375	0.57767	0.00033492	2.595	0.0015045	3.1726	0.0018394	579.7855209267558	25.625	0.36459	25.625	25.386	25.75	0					19	9	3	0	0	0	0.65051	1	8147	8147		28.081	2.5074	1	313710			13724	8591	8971	9004	13929	13929					-0.018728019383843275
GRREGRSQ	8	Unmodified	_GRREGRSQ_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2535705566406	2	473.252289	944.490024	3.7112	0.0017563	-0.56603	-0.00026788	3.1451	0.0014884	473.2519378636377	15.99	0.094817	15.99	15.936	16.031	0					5	3	2	0	0	0	0.58597	1	3757	3757		51.335	51.335	1	53586	+		13725	13516	8972	9005	13930	13930					0.015558824151867157
GRRGPLGVQAA	11	Unmodified	_GRRGPLGVQAA_					0	0	0		ENST00000282382.8_2_5:114961385-114961538:-|nuORF	ENST00000282382.8_2_5:114961385-114961538:-|nuORF	ENST00000282382.8_2_5:114961385-114961538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.314697265625	2	541.314889	1080.61522	-0.14089	-7.6264E-05	1.9516	0.0010564	1.8107	0.00098018	541.3160221919842	37.251	0.30489	37.251	37.086	37.391	0					27	16	2	0	0	0	0.72154	1	12570	12570		25.574	2.9944	1	78329			13726	8416	8973	9006	13931	13931					0.0781417455157225
GRRRVCWGK	9	Unmodified	_GRRRVCWGK_					0	0	0		ENST00000225729.7_1_17:18010580-18010793:+|nuORF	ENST00000225729.7_1_17:18010580-18010793:+|nuORF	ENST00000225729.7_1_17:18010580-18010793:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.5415954589844	3	373.210176	1116.6087	-2.1088	-0.00078702	0.92201	0.0003441	-1.1868	-0.00044291	373.21064177546396	22.154	1.5456	22.154	21.929	23.474	0					103	35	4	0	0	0	0.5741	1	6497	6497		24.519	24.519	1	6445500			13727	8186	8974	9007	13932	13932					0.055059581191926554
GRRSTVRR	8	Unmodified	_GRRSTVRR_					0	0	0			REV__ENST00000343916.7_1_20:61472092-61472281:+|nuORF	REV__ENST00000343916.7_1_20:61472092-61472281:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.53778076171875	3	329.868808	986.584593	1.6692	0.00055063	0.37712	0.0001244	2.0464	0.00067503	329.86908268198806	16.788	0.50738	16.788	16.583	17.09	0					19	10	3	0	0	0	0.7914	1	4776	4776		11.511	0.64546	1	2058300	+		13728	18471	8975	9008	13933	13933					0.09076440957187515
GRSGPILK	8	Unmodified	_GRSGPILK_					0	0	0		ENST00000522944.5_1_8:27690613-27695270:-|nuORF;ENST00000301905.8_1_8:27690647-27695270:-|nuORF	ENST00000522944.5_1_8:27690613-27695270:-|nuORF	ENST00000522944.5_1_8:27690613-27695270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.25848388671875	2	414.25852	826.502486	1.0245	0.00042441	-1.205	-0.00049917	-0.18048	-7.4763E-05	414.25800272726104	13.339	0.27528	13.339	13.282	13.557	0					13	6	3	0	0	0	0.74405	1	3236	3236		27.882	1.0861	1	343310			13729	8496	8976	9009	13934	13934					0.08229525825515793
GRSHKTNPDRI	11	Unmodified	_GRSHKTNPDRI_					0	0	0			REV__ENST00000491091.1_1_3:122036542-122036854:+|nuORF	REV__ENST00000491091.1_1_3:122036542-122036854:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.56585693359375	3	427.565453	1279.67453	0.25091	0.00010728	0.20064	8.5789E-05	0.45155	0.00019307	427.56556433919485	13.456	0.10356	13.456	13.398	13.502	0					12	5	3	0	0	0	0.74458	1	2638	2638		23.378	1.5975	1	247280	+		13730	19717	8977	9010	13935	13935					0.04588025775092319
GRSHRAPQSGP	11	Unmodified	_GRSHRAPQSGP_					0	0	0		nc|ENSG00000122778|Q9HCM3-3|KIAA1549;nc|ENSG00000122778|Q9HCM3-4|KIAA1549;KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.E1477Gfs*3|1|0.36|ENSG00000122778|chr7:138871280-138871281|-/G|frameshift_variant	nc|ENSG00000122778|Q9HCM3-3|KIAA1549	nc|ENSG00000122778|Q9HCM3-3|KIAA1549	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.298095703125	2	575.297227	1148.5799	1.6849	0.00096932	-0.074962	-4.3125E-05	1.6099	0.00092619	575.2970213599899	30.873	0.45995	30.873	30.714	31.174	0					34	9	5	0	0	0	0.69524	1	11464	11464		28.081	3.8787	1	6404000			13731	3288	8978	9011	13936	13936					0.011555120237517258
GRSKRASVL	9	Unmodified	_GRSKRASVL_					0	0	0		CTNNA3|p.K856Nfs*3|1|0.09|ENSG00000183230|chr10:65920450-65920450|T/-|frameshift_variant;CTNNA3|p.P857Tfs*4|2|0.35|ENSG00000183230|chr10:65920449-65920450|-/T|frameshift_variant;ENSG00000183230|ENST00000433211|CTNNA3;CTNNA3|p.E354Kfs*6|2|0.31|ENSG00000183230|chr10:66775513-66775513|T/-|frameshift_variant;nc|ENSG00000183230|Q9UI47-2|CTNNA3	CTNNA3|p.K856Nfs*3|1|0.09|ENSG00000183230|chr10:65920450-65920450|T/-|frameshift_variant	CTNNA3|p.K856Nfs*3|1|0.09|ENSG00000183230|chr10:65920450-65920450|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2998046875	2	487.298707	972.582862	2.5542	0.0012447	-0.26823	-0.00013071	2.286	0.0011139	487.29851878669405	39.325	0.27967	39.325	39.19	39.469	0					14	6	3	0	0	0	0.34452	1	15545	15545		46.457	46.457	1	412230			13732	708	8979	9012	13937	13937					0.09547387148563757
GRSRSRVRA	9	Unmodified	_GRSRSRVRA_					0	0	0			REV__ENSG00000101951|ENST00000218068|PAGE4	REV__ENSG00000101951|ENST00000218068|PAGE4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8113403320312	2	522.810305	1043.60606	-0.044543	-2.3287E-05	2.5792	0.0013484	2.5347	0.0013252	522.8115639472929	11.645	0.12471	11.645	11.568	11.693	0					6	3	2	0	0	0	0.61124	1	2423	2423		17.365	0	1	534150	+		13733	13619	8980	9013	13938	13938					0.08599825985902498
GRSSESQKK	9	Unmodified	_GRSSESQKK_					0	0	0			REV__nc|ENSG00000198586|Q9UKI8-4|TLK1	REV__nc|ENSG00000198586|Q9UKI8-4|TLK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.76922607421875	2	503.767437	1005.52032	2.93	0.0014761	0.73233	0.00036892	3.6624	0.001845	503.7677503363405	25.908	0.24782	25.908	25.684	25.932	0					9	3	3	0	0	0	0.078509	1	9080	9080		85.161	85.161	1	2388300	+		13734	17408	8981	9014	13939	13939					0.017781962897174708
GRSYDWLTL	9	Unmodified	_GRSYDWLTL_					0	0	0			REV__WDR5B|p.K235T|1|0.07|ENSG00000196981|chr3:122414825-122414825|T/G|missense_variant	REV__WDR5B|p.K235T|1|0.07|ENSG00000196981|chr3:122414825-122414825|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.7826538085938	2	555.782556	1109.55056	0.1145	6.364E-05	0.89688	0.00049847	1.0114	0.00056211	555.7825506774016	23.584	0.19058	23.584	23.485	23.676	0					17	7	3	0	0	0	0.46194	1	7094	7094		21.96	3.6355	1	206670	+		13735	22293	8982	9015	13940	13940					0.00016554954891034868
GRVPLPSVA	9	Unmodified	_GRVPLPSVA_					0	0	0			REV__ENSG00000131183|ENST00000324417|SLC34A1	REV__ENSG00000131183|ENST00000324417|SLC34A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2713623046875	2	448.271627	894.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.54	1	25.54	25.04	26.04	0								0	0	0	0.3428	1	9078	9078		26.693	4.733	1		+		13736	14613	8983	9016	13941	13941					0.07721794996984954
GRVSFGLR	8	Unmodified	_GRVSFGLR_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2609558105469	2	446.261594	890.508634	-0.40749	-0.00018185	-1.7508	-0.00078131	-2.1583	-0.00096316	446.26083089261124	31.327	0.2483	31.327	31.242	31.49	0					10	6	2	0	0	0	0.58597	1	11382	11382		51.335	0.14276	1	334000	+		13737	17092	8984	9017	13942	13942					0.059000440570343926
GRVTQASVK	9	Unmodified	_GRVTQASVK_					0	0	0		ENSG00000112041|ENST00000229771|TULP1;nc|ENSG00000112041|O00294-2|TULP1;nc|ENSG00000078246|O75386-2|TULP3;ENSG00000078246|ENST00000448120|TULP3;ENSG00000166402|ENST00000299506|TUB;nc|ENSG00000166402|P50607-2|TUB	ENSG00000112041|ENST00000229771|TULP1;nc|ENSG00000078246|O75386-2|TULP3;ENSG00000166402|ENST00000299506|TUB	ENSG00000112041|ENST00000229771|TULP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.27752685546875	2	473.277441	944.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.738	1	11.738	11.238	12.238	0								0	0	0	0.35899	1	2324	2324		23.042	3.6825	1				13738	2712;1598;5895	8985	9018	13943	13943					0.06583992020318874
GRYLQRKLI	9	Unmodified	_GRYLQRKLI_					0	0	0		NAV3|p.R2193Q|1|0.28|ENSG00000067798|chr12:78199394-78199394|G/A|missense_variant	NAV3|p.R2193Q|1|0.28|ENSG00000067798|chr12:78199394-78199394|G/A|missense_variant	NAV3|p.R2193Q|1|0.28|ENSG00000067798|chr12:78199394-78199394|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.90838623046875	3	382.90838	1145.70331	-0.13969	-5.349E-05	-0.064002	-2.4507E-05	-0.20369	-7.7997E-05	382.908476191333	22.682	0.3627	22.682	22.56	22.923	0					12	8	3	0	0	0	0.5654	1	6798	6798		19.104	6.8968	1	87043			13739	11407	8986	9019	13944	13944					0.13628795142176386
GRYRATFPIAI	11	Unmodified	_GRYRATFPIAI_					0	0	0			REV__DTHD1|p.Q264Hfs*6|1|0.15|ENSG00000197057|chr4:36290651-36290652|-/TT|frameshift_variant	REV__DTHD1|p.Q264Hfs*6|1|0.15|ENSG00000197057|chr4:36290651-36290652|-/TT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2445373535156	3	422.24354	1263.70879	-0.33789	-0.00014267	2.8683	0.0012111	2.5305	0.0010685	422.2449540306534	19.055	0.31477	19.055	18.946	19.26	0					10	6	3	0	0	0	0.72624	1	5835	5835		25.126	0.89417	1	316100	+		13740	12747	8987	9020	13945	13945					0.08748473933997047
GSAAVSGRPRS	11	Unmodified	_GSAAVSGRPRS_					0	0	0		ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF	ENST00000563749.1_1_16:89627605-89627911:+|nuORF	ENST00000563749.1_1_16:89627605-89627911:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7823486328125	2	522.780879	1043.5472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.611	1	13.611	13.111	14.111	0								0	0	0	0.38672	1	3200	3200		40.058	0.80534	1				13741	9998	8988	9021	13946	13946					0.027173049009206807
GSADTIQIGK	10	Unmodified	_GSADTIQIGK_					0	0	0		ENST00000552975.5_1_12:47599848-47610169:-|nuORF	ENST00000552975.5_1_12:47599848-47610169:-|nuORF	ENST00000552975.5_1_12:47599848-47610169:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.266357421875	2	495.266739	988.518924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.018	1	26.018	25.518	26.518	0								0	0	0	0.33707	1	8129	8129		45.022	7.2107	1				13742	10634	8989	9022	13947	13947					0.024205622009503713
GSADTIQIGK	10	Unmodified	_GSADTIQIGK_					0	0	0		ENST00000552975.5_1_12:47599848-47610169:-|nuORF	ENST00000552975.5_1_12:47599848-47610169:-|nuORF	ENST00000552975.5_1_12:47599848-47610169:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.26666259765625	2	495.266739	988.518924	0.7086	0.00035095	-2.0533	-0.0010169	-1.3447	-0.00066598	495.26595224629597	26.268	0.46016	26.268	26.168	26.628	0					20	9	5	0	0	0	0.31894	1	9394	9394		65.157	8.7235	1	395360			13743	10634	8989	9022	13948	13948					0.024205622009503713
GSAEPTKTRK	10	Unmodified	_GSAEPTKTRK_					0	0	0		ENST00000395285.3_1_20:61917669-61919222:+|nuORF;ENST00000370275.8_2_20:61917492-61919222:+|nuORF;ENST00000518618.2_1_20:61917181-61919222:+|nuORF;ENST00000468975.6_1_20:61915834-61919222:+|nuORF;nc|ENSG00000101199|Q8N6T3-4|ARFGAP1;nc|ENSG00000101199|Q8N6T3-5|ARFGAP1;ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1	ENST00000395285.3_1_20:61917669-61919222:+|nuORF	ENST00000395285.3_1_20:61917669-61919222:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.800048828125	2	537.798737	1073.58292	1.8909	0.0010169	-0.87514	-0.00047065	1.0157	0.00054625	537.7982490010619	10.989	0.13713	10.989	10.934	11.071	0					13	6	3	0	0	0	0.13663	1	2146	2146		89.029	7.5038	1	660300			13744	2101	8990	9023	13949	13949					0.04907342357910238
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7535705566406	2	492.753464	983.492375	-0.16456	-8.1087E-05	-0.38936	-0.00019186	-0.55392	-0.00027295	492.75357433993173	26.518	0.1181	26.518	26.448	26.566	0					7	4	2	0	0	0	0.50287	1	8063	8063		45.022	9.8702	1	58990			13745	6757	8991	9024	13950	13950					-3.126690364751994E-05
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7535705566406	2	492.753464	983.492375	-1.2654	-0.00062352	0.85783	0.0004227	-0.40756	-0.00020083	492.75392087916805	26.522	0.11378	26.522	26.438	26.551	0					6	4	2	0	0	0	0.39647	1	8344	8344		56.632	3.6955	1	114060			13746	6757	8991	9024	13951	13951					-3.126690364751994E-05
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.75299072265625	2	492.753464	983.492375	0.60078	0.00029604	-1.786	-0.00088006	-1.1852	-0.00058402	492.7524454223969	26.769	0.21837	26.769	26.661	26.879	0					8	4	2	0	0	0	0.10583	1	9631	9631		94.409	24.011	1	830190			13747	6757	8991	9024	13952	13952					-3.126690364751994E-05
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.75311279296875	2	492.753464	983.492375	-2.6246	-0.0012933	1.5498	0.00076366	-1.0749	-0.00052964	492.7541354299648	26.59	0.14381	26.59	26.495	26.639	0					5	3	2	0	0	0	0.39647	1	8575	8575		56.632	12.515	1	96919			13748	6757	8991	9024	13953	13953					-3.126690364751994E-05
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7527770996094	2	492.753464	983.492375	0.84878	0.00041824	-1.6249	-0.00080069	-0.77614	-0.00038245	492.75253377585085	26.696	0.16835	26.696	26.637	26.805	0					5	3	2	0	0	0	0.21577	1	9477	9477		77.533	12.376	1	512920			13749	6757	8991	9024	13954	13954					-3.126690364751994E-05
GSAITGPVAK	10	Unmodified	_GSAITGPVAK_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.76080322265625	2	450.761092	899.507631	-0.48931	-0.00022056	-0.063988	-2.8843E-05	-0.55329	-0.0002494	450.760992045773	22.069	0.17115	22.069	21.948	22.119	0					8	4	2	0	0	0	0.38179	1	7122	7122		58.246	13.869	1	275870			13750	3428	8992	9025	13955	13955					0.053857848974644185
GSAITGPVAK	10	Unmodified	_GSAITGPVAK_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.76092529296875	2	450.761092	899.507631	-2.6058	-0.0011746	2.108	0.00095022	-0.4978	-0.00022439	450.76213584342264	21.792	0.15162	21.792	21.702	21.854	0					6	3	2	0	0	0	0.48965	1	6396	6396		46.457	5.6786	1	77639			13751	3428	8992	9025	13956	13956					0.053857848974644185
GSAKPGLQK	9	Unmodified	_GSAKPGLQK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.26129150390625	2	443.261259	884.507966	-0.35412	-0.00015697	0.16118	7.1446E-05	-0.19294	-8.5524E-05	443.26135349572985	14.492	0.45435	14.492	14.366	14.82	0					21	11	4	0	0	0	0.025517	1	3526	3526		113.41	5.3241	1	4154900			13752	2276	8993	9026	13957	13957					0.061092046173257586
GSAKPGLQK	9	Unmodified	_GSAKPGLQK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2609558105469	2	443.261259	884.507966	-1.1557	-0.00051228	1.1871	0.00052621	0.031428	1.3931E-05	443.26172864770075	14.163	0.16012	14.163	14.102	14.262	0					11	7	2	0	0	0	0.0406	1	3014	3014		98.629	2.4389	1	207900			13753	2276	8993	9026	13958	13958					0.061092046173257586
GSAKPGLQK	9	Unmodified	_GSAKPGLQK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2610778808594	2	443.261259	884.507966	0.51849	0.00022983	-0.99879	-0.00044273	-0.4803	-0.0002129	443.2608650464251	14.412	0.32981	14.412	14.317	14.646	0					19	7	4	0	0	0	0.0086566	1	3741	3741		143.89	32.238	1	2197700			13754	2276	8993	9026	13959	13959					0.061092046173257586
GSALGGVFK	9	Unmodified	_GSALGGVFK_					0	0	0		nc|ENSG00000174514|Q8N468-2|MFSD4A;ENSG00000174514|ENST00000367147|MFSD4A	nc|ENSG00000174514|Q8N468-2|MFSD4A	nc|ENSG00000174514|Q8N468-2|MFSD4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.2366027832031	2	418.237253	834.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.688	1	33.688	33.188	34.188	0								0	0	0	0.2591	1	12480	12480		42.396	6.7778	1				13755	6494	8994	9027	13960	13960					0.03610130697279601
GSALTTLWA	9	Unmodified	_GSALTTLWA_					0	0	0		ENST00000409379.7_1_8:145668168-145669565:-|nuORF	ENST00000409379.7_1_8:145668168-145669565:-|nuORF	ENST00000409379.7_1_8:145668168-145669565:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2567443847656	2	460.247818	918.481082	2.5365	0.0011674	0.82325	0.0003789	3.3597	0.0015463	460.24812900421693	30.317	1.0514	30.317	29.813	30.865	0					54	21	3	0	0	0	0.45358	1	11339	11339		37.159	3.6435	1	4686200			13756	9297	8995	9028	13961	13961					0.018580960061285623
GSANLPLAK	9	Unmodified	_GSANLPLAK_					0	0	0		ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant;ACE|p.I462Lfs*63|2|0.27|ENSG00000159640|chr17:63483065-63483065|A/-|frameshift_variant;ACE|p.S903Rfs*9|1|0.07|ENSG00000159640|chr17:63491014-63491014|C/-|frameshift_variant;nc|ENSG00000159640|P12821-2|ACE;ACE|p.P1103Qfs*69|1|0.14|ENSG00000159640|chr17:63494393-63494393|C/-|frameshift_variant;ENSG00000159640|ENST00000290866|ACE	ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.75537109375	2	435.75581	869.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.512	1	25.512	25.012	26.012	0								0	0	0	0.13137	1	7680	7680		64.207	12.872	1				13757	35	8996	9029	13962	13962					0.05709802243052309
GSANLPLAK	9	Unmodified	_GSANLPLAK_					0	0	0		ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant;ACE|p.I462Lfs*63|2|0.27|ENSG00000159640|chr17:63483065-63483065|A/-|frameshift_variant;ACE|p.S903Rfs*9|1|0.07|ENSG00000159640|chr17:63491014-63491014|C/-|frameshift_variant;nc|ENSG00000159640|P12821-2|ACE;ACE|p.P1103Qfs*69|1|0.14|ENSG00000159640|chr17:63494393-63494393|C/-|frameshift_variant;ENSG00000159640|ENST00000290866|ACE	ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.7548828125	2	435.75581	869.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.564	1	25.564	25.064	26.064	0								0	0	0	0.17378	1	8146	8146		54.776	8.8041	1				13758	35	8996	9029	13963	13963					0.05709802243052309
GSAPRTPSK	9	Unmodified	_GSAPRTPSK_					0	0	0		nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-4|PRC1	nc|ENSG00000198901|O43663-4|PRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.7486877441406	2	450.748516	899.482479	-1.1877	-0.00053537	1.3732	0.00061896	0.18545	8.3591E-05	450.74910437163146	13.249	0.34464	13.249	13.019	13.364	0					23	18	2	0	0	0	0.56843	1	2679	2679		25.126	2.0835	1	115660			13759	7637	8997	9030	13964	13964					0.028717300948983393
GSAPVGKQK	9	Unmodified	_GSAPVGKQK_					0	0	0		nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.2532958984375	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.703	1	11.703	11.203	12.203	0								0	0	0	0.080575	1	2462	2462		77.318	21.813	1				13760	11622	8998	9031	13965	13965					0.051889181002820806
GSAQGMDSMLK	11	Unmodified	_GSAQGMDSMLK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7578125	2	562.757366	1123.50018	0.4559	0.00025656	-0.16762	-9.4329E-05	0.28828	0.00016223	562.7571902891036	30.873	0.1451	30.873	30.771	30.916	0					5	3	2	0	0	0	0.34891	1	11187	11187		57.149	14.284	1	282960			13761	5033	8999	9032	13966	13966					-0.05663058756772443
GSAQGMDSMLK	11	Unmodified	_GSAQGMDSMLK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.7576904296875	2	562.757366	1123.50018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.661	1	30.661	30.161	31.161	0								0	0	0	0.39288	1	10093	10093		38.714	1.555	1				13762	5033	8999	9032	13967	13967					-0.05663058756772443
GSAQGMDSMLK	11	Unmodified	_GSAQGMDSMLK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7577514648438	2	562.757366	1123.50018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.881	1	30.881	30.381	31.381	0								0	0	0	0.0003078	1	11589	11589		128.51	37.913	1				13763	5033	8999	9032	13968	13968					-0.05663058756772443
GSAQGMDSMLK	11	Unmodified	_GSAQGMDSMLK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7582397460938	2	562.757366	1123.50018	-0.98062	-0.00055185	1.564	0.00088018	0.58343	0.00032833	562.7581773217786	30.649	0.15261	30.649	30.572	30.724	0					7	4	2	0	0	0	0.44025	1	10472	10472		48.602	14.429	1	76908			13764	5033	8999	9032	13969	13969					-0.05663058756772443
GSAQPGMAK	9	Unmodified	_GSAQPGMAK_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.7103576660156	2	423.710545	845.406537	0.96594	0.00040928	-1.4966	-0.00063414	-0.53069	-0.00022486	423.71011707023376	15.481	0.30159	15.481	15.283	15.584	0					15	7	3	0	0	0	0.28897	1	3969	3969		51.193	8.7966	1	187650			13765	5443	9000	9033	13970	13970					-0.022349900768858788
GSASPAVTK	9	Unmodified	_GSASPAVTK_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.22406005859375	2	409.224342	816.434132	0.63266	0.0002589	-0.46316	-0.00018953	0.1695	6.9364E-05	409.22409992960246	15.264	0.22267	15.264	15.174	15.397	0					10	5	3	0	0	0	0.012231	1	3913	3913		136.27	45.491	1	277040			13766	7514	9001	9034	13971	13971					0.0185723645500957
GSASPAVTK	9	Unmodified	_GSASPAVTK_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.2240905761719	2	409.224342	816.434132	0.052718	2.1574E-05	-0.46502	-0.0001903	-0.4123	-0.00016872	409.2242189397484	15.251	0.35485	15.251	15.096	15.451	0					12	7	3	0	0	0	0.095583	1	4121	4121		80.455	5.4113	1	426140			13767	7514	9001	9034	13972	13972					0.0185723645500957
GSASPAVTK	9	Unmodified	_GSASPAVTK_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.2244873046875	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.2	1	15.2	14.7	15.7	0								0	0	0	0.077333	1	3956	3956		78.264	35.4	1				13768	7514	9001	9034	13973	13973					0.0185723645500957
GSASRVFTHI	10	Unmodified	_GSASRVFTHI_					0	0	0		ENST00000346085.9_2_6:157098516-157098651:+|nuORF	ENST00000346085.9_2_6:157098516-157098651:+|nuORF	ENST00000346085.9_2_6:157098516-157098651:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7872314453125	2	537.788173	1073.56179	1.9948	0.0010728	-1.492	-0.00080238	0.50286	0.00027043	537.7873118837853	26.85	0.4653	26.85	26.739	27.204	0					18	9	4	0	0	0	0.34667	1	9598	9598		62.107	1.1355	1	2814800			13769	8763	9002	9035	13974	13974					0.027953770490512397
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.2550048828125	2	455.255643	908.496732	0.017591	8.0083E-06	-0.41779	-0.0001902	-0.4002	-0.00018219	455.25550852640043	32.45	0.17929	32.45	32.345	32.525	0					11	7	2	0	0	0	0.22837	1	10480	10480		58.23	13.853	1	93853			13770	7882	9003	9036	13975	13975					0.038823825231816045
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.25518798828125	2	455.255643	908.496732	0.72962	0.00033216	-1.274	-0.00058001	-0.54441	-0.00024785	455.25506655770965	32.713	0.2543	32.713	32.583	32.837	0					15	6	3	0	0	0	0.023928	1	12028	12028		115.49	50.029	1	543140			13771	7882	9003	9036	13976	13976					0.038823825231816045
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.2559509277344	2	455.255643	908.496732	-1.1238	-0.00051162	0.86796	0.00039514	-0.25584	-0.00011647	455.2559435888247	32.474	0.19321	32.474	32.385	32.578	0					11	7	2	0	0	0	0.21263	1	10832	10832		60.118	8.9256	1	136750			13772	7882	9003	9036	13977	13977					0.038823825231816045
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.25543212890625	2	455.255643	908.496732	0.72134	0.0003284	-0.89453	-0.00040724	-0.17319	-7.8844E-05	455.25512178302574	32.683	0.46499	32.683	32.555	33.02	0					20	11	3	0	0	0	0.023928	1	12438	12438		115.49	8.4865	1	869390			13773	7882	9003	9036	13978	13978					0.038823825231816045
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.2557678222656	2	455.255643	908.496732	0.17771	8.0901E-05	-0.99922	-0.0004549	-0.82151	-0.000374	455.2554494861559	32.488	0.13222	32.488	32.397	32.529	0					6	4	2	0	0	0	0.51991	1	11310	11310		30.318	1.1682	1	44789			13774	7882	9003	9036	13979	13979					0.038823825231816045
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.2555847167969	2	455.255643	908.496732	0.12225	5.5653E-05	-0.2322	-0.00010571	-0.10995	-5.0056E-05	455.255480340739	32.466	0.20116	32.466	32.386	32.587	0					9	6	2	0	0	0	0.30841	1	11295	11295		49.536	20.366	1	118200			13775	7882	9003	9036	13980	13980					0.038823825231816045
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.2554626464844	2	455.255643	908.496732	-0.42522	-0.00019358	0.022808	1.0383E-05	-0.40241	-0.0001832	455.2555802938305	32.687	0.26595	32.687	32.523	32.789	0					12	5	3	0	0	0	0.01873	1	12333	12333		124.08	38.919	1	332100			13776	7882	9003	9036	13981	13981					0.038823825231816045
GSATSLVFK	9	Unmodified	_GSATSLVFK_					0	0	0		PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.25537109375	2	455.255643	908.496732	0.8782	0.00039981	-1.1988	-0.00054576	-0.32059	-0.00014595	455.2550226447162	32.665	0.4154	32.665	32.557	32.972	0					13	8	3	0	0	0	0.023928	1	12327	12327		115.49	8.4865	1	720930			13777	7882	9003	9036	13982	13982					0.038823825231816045
GSAVLMKMR	9	Unmodified	_GSAVLMKMR_					0	0	0		ENST00000560190.5_1_15:57212111-57565250:+|nuORF	ENST00000560190.5_1_15:57212111-57565250:+|nuORF	ENST00000560190.5_1_15:57212111-57565250:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.5174560546875	3	331.517507	991.530692	1.6534	0.00054814	-1.9051	-0.00063156	-0.25164	-8.3424E-05	331.51694410694324	12.97	0.28913	12.97	12.87	13.159	0					8	6	2	0	0	0	0.61124	1	2904	2904		24.519	5.1592	1	259280			13778	10686	9004	9037	13983	13983					0.034587644189400635
GSAVSTVTK	9	Unmodified	_GSAVSTVTK_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31492537-31495228:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN;ENST00000493335.5_1_22:31492537-31494796:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.23748779296875	2	425.23745	848.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.669	1	17.669	17.169	18.169	0								0	0	0	0.13425	1	4453	4453		63.534	10.597	1				13779	6993	9005	9038	13984	13984					0.030055056264814084
GSCSDFQFK	9	Carbamidomethyl (C)	_GSC(Carbamidomethyl (C))SDFQFK_	GSC(1)SDFQFK		GSC(100)SDFQFK		0	1	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2302856445312	2	538.229299	1074.44404	1.4709	0.0007917	-0.18737	-0.00010085	1.2836	0.00069085	538.229327723353	30.523	0.28135	30.523	30.449	30.73	0					23	11	3	0	0	0	0.035062	1	9736	9736		104.06	54.615	1	128890			13780	3372	9006	9039	13985	13985	135				-0.09019943601924751
GSCSDFQFK	9	Carbamidomethyl (C)	_GSC(Carbamidomethyl (C))SDFQFK_	GSC(1)SDFQFK		GSC(140)SDFQFK		0	1	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2296142578125	2	538.229299	1074.44404	2.0466	0.0011015	-1.3882	-0.00074717	0.65837	0.00035435	538.2287121428558	30.796	0.3586	30.796	30.658	31.017	0					25	8	4	0	0	0	0.012231	1	11129	11129		136.27	79.547	1	1248500			13781	3372	9006	9039	13986	13986	135				-0.09019943601924751
GSCSDFQFK	9	Carbamidomethyl (C)	_GSC(Carbamidomethyl (C))SDFQFK_	GSC(1)SDFQFK		GSC(100)SDFQFK		0	1	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.229736328125	2	538.229299	1074.44404	-0.25906	-0.00013943	1.1796	0.00063488	0.92051	0.00049545	538.2299368236387	30.588	0.24578	30.588	30.474	30.719	0					23	9	3	0	0	0	0.035062	1	10046	10046		104.06	54.521	1	323930			13782	3372	9006	9039	13987	13987	135				-0.09019943601924751
GSCSDFQFK	9	Carbamidomethyl (C)	_GSC(Carbamidomethyl (C))SDFQFK_	GSC(1)SDFQFK		GSC(150)SDFQFK		0	1	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2298583984375	2	538.229299	1074.44404	1.9093	0.0010276	-1.597	-0.00085956	0.31224	0.00016806	538.2285809394643	30.823	0.62509	30.823	30.68	31.305	0					31	14	5	0	0	0	0.0071053	1	11552	11552		148.99	90.205	1	2025800			13783	3372	9006	9039	13988	13988	135				-0.09019943601924751
GSCSDFQFK	9	Carbamidomethyl (C)	_GSC(Carbamidomethyl (C))SDFQFK_	GSC(1)SDFQFK		GSC(91)SDFQFK		0	1	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2296752929688	2	538.229299	1074.44404	1.0113	0.00054433	-0.24671	-0.00013279	0.76463	0.00041155	538.2292614839688	30.585	0.30105	30.585	30.504	30.805	0					18	8	3	0	0	0	0.063171	1	10427	10427		90.601	33.88	1	252930			13784	3372	9006	9039	13989	13989	135				-0.09019943601924751
GSCSDFQFK	9	Carbamidomethyl (C)	_GSC(Carbamidomethyl (C))SDFQFK_	GSC(1)SDFQFK		GSC(64)SDFQFK		0	1	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2296142578125	2	538.229299	1074.44404	-1.4531	-0.0007821	1.8922	0.0010184	0.43906	0.00023631	538.2304594954843	30.586	0.27024	30.586	30.494	30.764	0					14	7	4	0	0	0	0.18416	1	10438	10438		63.534	19.157	1	189200			13785	3372	9006	9039	13990	13990	135				-0.09019943601924751
GSCSDFQFK	9	Carbamidomethyl (C)	_GSC(Carbamidomethyl (C))SDFQFK_	GSC(1)SDFQFK		GSC(140)SDFQFK		0	1	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.229736328125	2	538.229299	1074.44404	2.0202	0.0010873	-1.6446	-0.00088519	0.37556	0.00020214	538.2285744448413	30.772	0.36389	30.772	30.663	31.027	0					21	7	4	0	0	0	0.012231	1	11419	11419		136.27	77.486	1	2712600			13786	3372	9006	9039	13991	13991	135				-0.09019943601924751
GSDEDYIDED	10	Unmodified	_GSDEDYIDED_					0	0	0		ENST00000442031.1_1_X:51665090-51665543:-|nuORF	ENST00000442031.1_1_X:51665090-51665543:-|nuORF	ENST00000442031.1_1_X:51665090-51665543:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.2098388671875	2	579.20948	1156.40441	-1.6784	-0.00097215	2.2374	0.0012959	0.559	0.00032378	579.2110664250549	29.571	0.39601	29.571	29.443	29.839	0					27	10	4	0	0	0	0.37692	1	9969	9969		58.782	12.81	1	814140			13787	9587	9007	9040	13992	13992					-0.16753836862335447
GSDLPIIEK	9	Unmodified	_GSDLPIIEK_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2731018066406	2	486.274032	970.533512	-0.29172	-0.00014186	-0.38734	-0.00018835	-0.67906	-0.00033021	486.2733528539312	34.239	0.42489	34.239	33.947	34.372	0					27	11	3	0	0	0	0.24334	1	12715	12715		56.434	8.7765	1	239610			13788	7615	9008	9041	13993	13993					0.0470663434908829
GSDRDTLAK	9	Unmodified	_GSDRDTLAK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7487487792969	2	481.748713	961.482873	0.0439	2.1149E-05	-0.94129	-0.00045347	-0.89739	-0.00043232	481.7484718929345	14.563	0.13434	14.563	14.529	14.663	0					9	5	3	0	0	0	0.10915	1	3024	3024		77.318	17.024	1	114500			13789	1085	9009	9042	13994	13994					0.0005910502410415575
GSDRDTLAK	9	Unmodified	_GSDRDTLAK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7483825683594	2	481.748713	961.482873	0.54704	0.00026354	-1.0736	-0.00051719	-0.52654	-0.00025366	481.7481595615262	14.866	0.3389	14.866	14.655	14.994	0					14	8	3	0	0	0	0.076532	1	3709	3709		85.862	20.396	1	1848800			13790	1085	9009	9042	13995	13995					0.0005910502410415575
GSDRDTLAK	9	Unmodified	_GSDRDTLAK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7484130859375	2	481.748713	961.482873	-0.10503	-5.0599E-05	-0.437	-0.00021052	-0.54203	-0.00026112	481.748490820344	14.807	0.16194	14.807	14.748	14.91	0					10	3	4	0	0	0	0.13726	1	3930	3930		70.816	8.7088	1	641890			13791	1085	9009	9042	13996	13996					0.0005910502410415575
GSDRDTLAK	9	Unmodified	_GSDRDTLAK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7488098144531	2	481.748713	961.482873	0.13313	6.4135E-05	0.097225	4.6838E-05	0.23035	0.00011097	481.7487465287968	14.62	0.11611	14.62	14.558	14.674	0					7	4	2	0	0	0	0.14578	1	3133	3133		68.846	5.5399	1	178080			13792	1085	9009	9042	13997	13997					0.0005910502410415575
GSDRDTLAK	9	Unmodified	_GSDRDTLAK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7485046386719	2	481.748713	961.482873	-0.62239	-0.00029984	0.031489	1.517E-05	-0.5909	-0.00028467	481.7487712224691	14.819	0.26679	14.819	14.711	14.978	0					10	5	3	0	0	0	0.14578	1	3759	3759		68.846	12.125	1	1013600			13793	1085	9009	9042	13998	13998					0.0005910502410415575
GSDVAWQNSQ	10	Unmodified	_GSDVAWQNSQ_					0	0	0			REV__MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant	REV__MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.2442626953125	2	546.241252	1090.46795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.358	1	35.358	34.858	35.858	0								0	0	0	0.38475	1	11591	11591		35.152	3.1972	1		+		13794	14285	9010	9043	13999	13999					-0.07366386843909822
GSDVVFRIG	9	Unmodified	_GSDVVFRIG_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.258544921875	2	475.258717	948.50288	-0.44204	-0.00021008	-0.16241	-7.7185E-05	-0.60445	-0.00028727	475.2586441132295	27.046	0.17073	27.046	26.956	27.127	0					7	4	2	0	0	0	0.45358	1	9410	9410		37.159	1.5408	1	171260	+		13795	14764	9011	9044	14000	14000					0.026569007547323054
GSEEPEEKK	9	Unmodified	_GSEEPEEKK_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.748291015625	2	516.745836	1031.47712	3.2998	0.0017051	1.2273	0.00063422	4.5271	0.0023394	516.7465768575024	15.772	0.31516	15.772	15.664	15.98	0					19	6	5	0	0	0	0.087861	1	4241	4241		82.241	10.363	1	3474600			13796	7066	9012	9045	14001	14001					-0.03736038278225351
GSEGPSYAK	9	Unmodified	_GSEGPSYAK_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF;TIMM50|p.H211Mfs*21|1|0.44|ENSG00000105197|chr19:39486426-39486426|C/-|frameshift_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.2116394042969	2	448.211432	894.408311	0.096041	4.3047E-05	0.56089	0.0002514	0.65693	0.00029444	448.21165389200416	16.911	0.30597	16.911	16.69	16.996	0					18	12	2	0	0	0	0.25716	1	3908	3908		54.776	10.66	1	107080			13797	2335	9013	9046	14002	14002					-0.04311657787286549
GSEGPSYAK	9	Unmodified	_GSEGPSYAK_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF;TIMM50|p.H211Mfs*21|1|0.44|ENSG00000105197|chr19:39486426-39486426|C/-|frameshift_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.21160888671875	2	448.211432	894.408311	-1.176	-0.00052708	1.3452	0.00060294	0.16924	7.5855E-05	448.2119983591051	16.942	0.31125	16.942	16.72	17.031	0					19	12	2	0	0	0	0.21263	1	4115	4115		60.118	3.3972	1	217950			13798	2335	9013	9046	14003	14003					-0.04311657787286549
GSEGPSYAK	9	Unmodified	_GSEGPSYAK_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF;TIMM50|p.H211Mfs*21|1|0.44|ENSG00000105197|chr19:39486426-39486426|C/-|frameshift_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.21142578125	2	448.211432	894.408311	-0.32759	-0.00014683	0.40898	0.00018331	0.081397	3.6483E-05	448.21174473157805	16.895	0.34242	16.895	16.741	17.084	0					18	9	3	0	0	0	0.19605	1	4074	4074		62.107	21.329	1	155530			13799	2335	9013	9046	14004	14004					-0.04311657787286549
GSEGPSYAK	9	Unmodified	_GSEGPSYAK_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF;TIMM50|p.H211Mfs*21|1|0.44|ENSG00000105197|chr19:39486426-39486426|C/-|frameshift_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2118225097656	2	448.211432	894.408311	-2.614	-0.0011716	2.4818	0.0011124	-0.13219	-5.9247E-05	448.2127091927724	16.925	0.30899	16.925	16.762	17.071	0					13	8	2	0	0	0	0.15163	1	4123	4123		67.494	19.836	1	127820			13800	2335	9013	9046	14005	14005					-0.04311657787286549
GSETAGPPK	9	Unmodified	_GSETAGPPK_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2137451171875	2	422.213975	842.413397	-0.88221	-0.00037248	0.65785	0.00027776	-0.22436	-9.4727E-05	422.2141977663014	15.074	0.43224	15.074	14.851	15.283	0					16	10	2	0	0	0	0.087861	1	3846	3846		82.241	5.3939	1	244200			13801	4818	9014	9047	14006	14006					-0.01411353924663672
GSETSVKKK	9	Unmodified	_GSETSVKKK_					0	0	0			REV__ENST00000478272.1_1_13:101287253-101288829:-|nuORF	REV__ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.27667236328125	2	482.277106	962.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.009	1	11.009	10.509	11.509	0								0	0	0	0.36609	1	2159	2159		20.947	2.6848	1		+		13802	19561	9015	9048	14007	14007					0.05689152580623613
GSEWNESEL	9	Unmodified	_GSEWNESEL_					0	0	0			REV__ENST00000434027.2_1_5:98105142-98106079:+|nuORF	REV__ENST00000434027.2_1_5:98105142-98106079:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7224731445312	2	525.722361	1049.43017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.279	1	29.279	28.779	29.779	0								0	0	0	0.21054	1	9225	9225		49.442	1.7842	1		+		13803	19189	9016	9049	14008	14008					-0.09256897829368427
GSFDKFKEK	9	Unmodified	_GSFDKFKEK_					0	0	0		ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.5257263183594	3	362.525713	1084.55531	0.47915	0.0001737	-0.44543	-0.00016148	0.033722	1.2225E-05	362.52557808530196	20.65	0.24781	20.65	20.551	20.799	0					10	5	3	0	0	0	0.51991	1	6452	6452		45.022	24.185	1	661340			13804	10481	9017	9050	14009	14009					0.0164143909764789
GSFGKDQAHK	10	Unmodified	_GSFGKDQAHK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7713623046875	2	537.76998	1073.52541	-0.3161	-0.00016999	3.1629	0.0017009	2.8468	0.0015309	537.7722793884666	13.313	0.053444	13.313	13.295	13.349	0					6	3	2	0	0	0	0.4758	1	2740	2740		47.96	3.8427	1	41895			13805	3954	9018	9051	14010	14010					-0.008414998476837354
GSFGKDQAHK	10	Unmodified	_GSFGKDQAHK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7703857421875	2	537.76998	1073.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.568	1	13.568	13.068	14.068	0								0	0	0	0.019778	1	3332	3332		99.013	33.548	1				13806	3954	9018	9051	14011	14011					-0.008414998476837354
GSFGKDQAHK	10	Unmodified	_GSFGKDQAHK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7711791992188	2	537.76998	1073.52541	-1.4344	-0.0007714	4.3632	0.0023464	2.9288	0.001575	537.772567916609	13.326	0.052622	13.326	13.297	13.35	0					6	3	2	0	0	0	0.38179	1	2669	2669		58.246	10.589	1	38865			13807	3954	9018	9051	14012	14012					-0.008414998476837354
GSFKKQRNF	9	Unmodified	_GSFKKQRNF_					0	0	0		ENST00000392865.5_1_10:121259529-121259628:-|nuORF	ENST00000392865.5_1_10:121259529-121259628:-|nuORF	ENST00000392865.5_1_10:121259529-121259628:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	370.87005615234375	3	371.205085	1110.59343	0.49147	0.00018244	-3.7872	-0.0014058	-3.2957	-0.0012234	371.2037721528083	30.504	0.13076	30.504	30.42	30.551	0					5	4	2	0	0	0	0.5741	1	9738	9738		24.519	6.2571	1	51858			13808	9151	9019	9052	14013	14013					0.04255369802990572
GSFKLNKKAA	10	Unmodified	_GSFKLNKKAA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.2135009765625	3	355.213469	1062.61858	0.88443	0.00031416	-0.89477	-0.00031783	-0.010333	-3.6704E-06	355.21313628898133	25.266	0.15586	25.266	25.164	25.32	0					6	3	2	0	0	0	0.63224	1	8620	8620		30.318	3.2704	1	187660			13809	7222;6080;3386;7010	9020	9053	14014	14014					0.0897742460556401
GSFKQLTVK	9	Unmodified	_GSFKQLTVK_					0	0	0		ENST00000534385.1_1_11:118272380-118277824:+|nuORF;ENSG00000249222|ENST00000505920|ATP5MGL;ENSG00000167283|ENST00000300688|ATP5MG;ENST00000527186.1_1_11:118277587-118279810:+|nuORF	ENST00000534385.1_1_11:118272380-118277824:+|nuORF	ENST00000534385.1_1_11:118272380-118277824:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.298095703125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.905	1	23.905	23.405	24.405	0								0	0	0	0.14961	1	7244	7244		59.931	3.497	1				13810	5982	9021	9054	14015	14015					0.0781033333993264
GSFKQLTVK	9	Unmodified	_GSFKQLTVK_					0	0	0		ENST00000534385.1_1_11:118272380-118277824:+|nuORF;ENSG00000249222|ENST00000505920|ATP5MGL;ENSG00000167283|ENST00000300688|ATP5MG;ENST00000527186.1_1_11:118277587-118279810:+|nuORF	ENST00000534385.1_1_11:118272380-118277824:+|nuORF	ENST00000534385.1_1_11:118272380-118277824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2981872558594	2	504.297842	1006.58113	0.097815	4.9328E-05	0.2243	0.00011311	0.32211	0.00016244	504.29787296859286	24.121	0.21821	24.121	24.012	24.23	0					11	4	3	0	0	0	0.019258	1	8391	8391		123.21	38.293	1	602620			13811	5982	9021	9054	14016	14016					0.0781033333993264
GSFVGELMYK	10	Unmodified	_GSFVGELMYK_					0	0	0		ENST00000484495.5_1_7:95799231-95818686:-|nuORF;ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13;SLC25A13|p.N373D|1|0.26|ENSG00000004864|chr7:96184337-96184337|T/C|missense_variant	ENST00000484495.5_1_7:95799231-95818686:-|nuORF	ENST00000484495.5_1_7:95799231-95818686:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.7803344726562	2	565.781167	1129.54778	3.4701	0.0019633	-3.5318	-0.0019982	-0.061672	-3.4893E-05	565.7790768308184	43.697	0.18415	43.697	43.617	43.801	0					9	5	2	0	0	0	0.05785	1	17498	17498		106.68	53.594	1	194960			13812	946	9022	9055	14017	14017					-0.011810364942903107
GSFVSSLVK	9	Unmodified	_GSFVSSLVK_					0	0	0		ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2633056640625	2	462.263468	922.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.613	1	37.613	37.113	38.113	0								0	0	0	0.19847	1	14272	14272		51.193	5.2407	1				13813	6339	9023	9056	14018	14018					0.04802669040236651
GSFVSSLVK	9	Unmodified	_GSFVSSLVK_					0	0	0		ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2630615234375	2	462.263468	922.512382	0.72121	0.00033339	-0.87346	-0.00040377	-0.15225	-7.0379E-05	462.2628190075364	37.588	0.23481	37.588	37.49	37.725	0					12	7	2	0	0	0	0.095583	1	14719	14719		80.455	22.643	1	261870			13814	6339	9023	9056	14019	14019					0.04802669040236651
GSFVSSLVK	9	Unmodified	_GSFVSSLVK_					0	0	0		ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2633056640625	2	462.263468	922.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.383	1	37.383	36.883	37.883	0								0	0	0	0.27939	1	13385	13385		39.253	0.44669	1				13815	6339	9023	9056	14020	14020					0.04802669040236651
GSFVSSLVK	9	Unmodified	_GSFVSSLVK_					0	0	0		ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.26312255859375	2	462.263468	922.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.356	1	37.356	36.856	37.856	0								0	0	0	0.19847	1	13374	13374		51.193	12.387	1				13816	6339	9023	9056	14021	14021					0.04802669040236651
GSFVSSLVK	9	Unmodified	_GSFVSSLVK_					0	0	0		ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	ENSG00000172016|ENST00000305165|REG3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.26336669921875	2	462.263468	922.512382	0.80264	0.00037103	-0.83643	-0.00038665	-0.033785	-1.5617E-05	462.26297967929696	37.51	0.25686	37.51	37.4	37.657	0					7	5	2	0	0	0	0.25761	1	14683	14683		54.722	17.563	1	362250			13817	6339	9023	9056	14022	14022					0.04802669040236651
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000141736|P04626-3|ERBB2	nc|ENSG00000141736|P04626-3|ERBB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7505187988281	2	493.750724	985.486896	-0.48075	-0.00023737	-0.017583	-8.6818E-06	-0.49833	-0.00024605	493.75077353076506	29.281	0.28879	29.281	29.196	29.485	0					14	7	2	0	0	0	0.05785	1	10445	10445		106.68	45.711	1	629560			13818	4467	9024	9057	14023	14023					-0.006428054821981277
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000141736|P04626-3|ERBB2	nc|ENSG00000141736|P04626-3|ERBB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7503662109375	2	493.750724	985.486896	-1.2693	-0.00062671	-0.35644	-0.00017599	-1.6257	-0.0008027	493.7510222398009	29.06	0.27629	29.06	28.96	29.236	0					18	11	2	0	0	0	0.20981	1	9431	9431		78.264	37.486	1	256720			13819	4467	9024	9057	14024	14024					-0.006428054821981277
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000141736|P04626-3|ERBB2	nc|ENSG00000141736|P04626-3|ERBB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.75030517578125	2	493.750724	985.486896	0.64135	0.00031667	-2.4383	-0.0012039	-1.7969	-0.00088723	493.7499991565001	29.291	0.62097	29.291	29.146	29.767	0					21	13	2	0	0	0	0.012989	1	10837	10837		131.62	75.182	1	1713500			13820	4467	9024	9057	14025	14025					-0.006428054821981277
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000141736|P04626-3|ERBB2	nc|ENSG00000141736|P04626-3|ERBB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7502746582031	2	493.750724	985.486896	-2.5442	-0.0012562	2.0466	0.0010105	-0.4976	-0.00024569	493.7518521736437	29.086	0.29927	29.086	28.998	29.297	0					19	8	3	0	0	0	0.27065	1	9732	9732		70.816	23.159	1	205560			13821	4467	9024	9057	14026	14026					-0.006428054821981277
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000141736|P04626-3|ERBB2	nc|ENSG00000141736|P04626-3|ERBB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7503662109375	2	493.750724	985.486896	2.7817	0.0013735	-3.0869	-0.0015242	-0.30515	-0.00015067	493.7490249720735	29.232	0.36443	29.232	29.076	29.441	0					18	7	3	0	0	0	0.01518	1	10695	10695		128.6	65.296	1	2003900			13822	4467	9024	9057	14027	14027					-0.006428054821981277
GSGALLAP	8	Unmodified	_GSGALLAP_					0	0	0			REV__ENST00000415212.1_1_10:89578218-89578669:+|nuORF	REV__ENST00000415212.1_1_10:89578218-89578669:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.19769287109375	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.468	1	44.468	43.968	44.968	0								0	0	0	1.7419	1	17815	17815		37.028	0	1		+		13823	19026	9025	9058	14028	14028					0.02582483743128705
GSGEFGSVFK	10	Unmodified	_GSGEFGSVFK_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7478332519531	2	507.748182	1013.48181	-0.029207	-1.483E-05	-0.23179	-0.00011769	-0.261	-0.00013252	507.74793817081377	36.716	0.2379	36.716	36.586	36.824	0					15	6	3	0	0	0	0.44971	1	13856	13856		54.722	20.55	1	211900			13824	5909	9026	9059	14029	14029					-0.02439109344800272
GSGGVAGLKV	10	Unmodified	_GSGGVAGLKV_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7478332519531	2	422.747985	843.481417	-0.20636	-8.7238E-05	0.1884	7.9644E-05	-0.017962	-7.5933E-06	422.7480054962559	22.809	0.10569	22.809	22.745	22.85	0					6	3	2	0	0	0	0.65213	1	6515	6515		27.882	2.4321	1	105460	+		13825	13167	9027	9060	14030	14030					0.053415157259905754
GSGKEKKVLT	10	Unmodified	_GSGKEKKVLT_					0	0	0		ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.54498291015625	3	349.544996	1045.61316	1.4756	0.00051579	-1.2154	-0.00042484	0.26018	9.0945E-05	349.54453121654166	13.201	0.2056	13.201	13.143	13.349	0					6	4	2	0	0	0	0.39827	1	3019	3019		52.167	0	1	319160			13826	2290	9028	9061	14031	14031					0.0921770102308983
GSGKVTFPK	9	Unmodified	_GSGKVTFPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7630615234375	2	460.763635	919.512717	-0.44245	-0.00020386	-0.47621	-0.00021942	-0.91866	-0.00042329	460.76335812041845	20.836	0.47732	20.836	20.512	20.99	0					35	15	3	0	0	0	0.070005	1	5576	5576		88.177	16.881	1	214400			13827	3401	9029	9062	14032	14032					0.04974088760093309
GSGKVTFPK	9	Unmodified	_GSGKVTFPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.76361083984375	2	460.763635	919.512717	-0.69703	-0.00032117	0.54737	0.00025221	-0.14966	-6.8959E-05	460.76386346265	21.141	0.83374	21.141	20.685	21.518	0					50	19	4	0	0	0	0.026848	1	6618	6618		112.11	15.917	1	1364800			13828	3401	9029	9062	14033	14033					0.04974088760093309
GSGKVTFPK	9	Unmodified	_GSGKVTFPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.7635192871094	2	460.763635	919.512717	-0.86857	-0.0004002	0.099477	4.5835E-05	-0.76909	-0.00035437	460.7638756137085	20.834	0.50552	20.834	20.468	20.973	0					23	16	2	0	0	0	0.21419	1	5831	5831		59.931	10.489	1	87837			13829	3401	9029	9062	14034	14034					0.04974088760093309
GSGKVTFPK	9	Unmodified	_GSGKVTFPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7634582519531	2	460.763635	919.512717	0.72262	0.00033296	-1.2343	-0.00056874	-0.51171	-0.00023578	460.76310756255896	21.07	0.71093	21.07	20.713	21.424	0					26	14	3	0	0	0	0.022698	1	6916	6916		117.53	29.829	1	691590			13830	3401	9029	9062	14035	14035					0.04974088760093309
GSGNYNDFGNY	11	Unmodified	_GSGNYNDFGNY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.2357177734375	2	604.236167	1206.45778	0.6884	0.00041596	-0.49185	-0.0002972	0.19654	0.00011876	604.2359504140323	39.574	0.25313	39.574	39.456	39.709	0					16	9	2	0	0	0	0.32196	1	15548	15548		60.167	35.964	1	276580			13831	3273	9030	9063	14036	14036					-0.13718994569126153
GSGNYNDFGNY	11	Unmodified	_GSGNYNDFGNY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.236572265625	2	604.236167	1206.45778	1.9161	0.0011578	-1.1334	-0.00068485	0.78268	0.00047292	604.2355248171957	39.518	0.3304	39.518	39.421	39.752	0					12	7	3	0	0	0	0.051542	1	15636	15636		104.42	69.272	1	337940			13832	3273	9030	9063	14037	14037					-0.13718994569126153
GSGPRAAW	8	Unmodified	_GSGPRAAW_					0	0	0			REV__ENST00000368811.7_1_1:151966316-151966505:-|nuORF	REV__ENST00000368811.7_1_1:151966316-151966505:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2041015625	2	401.203744	800.392936	0.6713	0.00026933	0.9632	0.00038644	1.6345	0.00065577	401.2040394307098	34.973	0.32207	34.973	34.859	35.181	0					18	8	3	0	0	0	0.8006	1	13049	13049		20.482	2.1574	1	497690	+		13833	18615	9031	9064	14038	14038					-0.015244797938180454
GSGQFAIVK	9	Unmodified	_GSGQFAIVK_					0	0	0		ENST00000558482.5_1_15:64221904-64332460:-|nuORF;DAPK2|p.P226Lfs*17|1|0.2|ENSG00000035664|chr15:63926076-63926076|G/-|frameshift_variant;ENSG00000035664|ENST00000457488|DAPK2;nc|ENSG00000035664|Q9UIK4-2|DAPK2	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.755615234375	2	453.75581	905.497067	0.70055	0.00031788	-1.5182	-0.00068888	-0.81763	-0.000371	453.75526053897426	29.413	0.21089	29.413	29.245	29.456	0					11	5	4	0	0	0	0.032052	1	10511	10511		107.01	30.233	1	370560			13834	739	9032	9065	14039	14039					0.04053802243049631
GSGSVSIRK	9	Unmodified	_GSGSVSIRK_					0	0	0		TBC1D2B|p.A337T|1|0.15|ENSG00000167202|chr15:78025336-78025336|C/T|missense_variant;nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;TBC1D2B|p.L914Yfs*19|1|0.31|ENSG00000167202|chr15:77998312-77998312|G/-|frameshift_variant;ENSG00000167202|ENST00000300584|TBC1D2B	TBC1D2B|p.A337T|1|0.15|ENSG00000167202|chr15:78025336-78025336|C/T|missense_variant	TBC1D2B|p.A337T|1|0.15|ENSG00000167202|chr15:78025336-78025336|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.756103515625	2	445.756341	889.498129	-0.39791	-0.00017737	-0.06416	-2.86E-05	-0.46207	-0.00020597	445.75633086582565	15.85	0.13384	15.85	15.763	15.897	0					6	3	2	0	0	0	0.11898	1	4188	4188		75.043	30.666	1	730020			13835	5978	9033	9066	14040	14040					0.048960166119513815
GSGTGGAW	8	Unmodified	_GSGTGGAW_					0	0	0		ENST00000298585.2_1_9:140481500-140482232:-|nuORF	ENST00000298585.2_1_9:140481500-140482232:-|nuORF	ENST00000298585.2_1_9:140481500-140482232:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	346.65484619140625	2	346.653553	691.292553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.55	1	45.55	45.05	46.05	0								0	0	0	1.7419	1	15496	15496		14.664	0.88877	1				13836	8473	9034	9067	14041	14041					-0.06544136847480786
GSGYANRL	8	Unmodified	_GSGYANRL_					0	0	0			REV__tr|U7T514|U7T514_FUSNUAbortiveinfectionprotein-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00270PE=4SV=1	REV__tr|U7T514|U7T514_FUSNUAbortiveinfectionprotein-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00270PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.21136474609375	2	419.214309	836.414065	-0.87757	-0.00036789	-4.2887	-0.0017979	-5.1663	-0.0021658	419.2120374731527	39.648	0.26952	39.648	39.526	39.796	0					16	11	2	0	0	0	0.66372	1	15103	15103		38.806	1.7777	1	54040	+		13837	22170	9035	9068	14042	14042					-0.010685144849617245
GSHPGAPGL	9	Unmodified	_GSHPGAPGL_					0	0	0			REV__ENST00000485448.1_1_19:40872390-40872810:+|nuORF	REV__ENST00000485448.1_1_19:40872390-40872810:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.7037658691406	2	396.703577	791.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.601	1	29.601	29.101	30.101	0								0	0	0	0.30835	1	9360	9360		33.516	5.2613	1		+		13838	19654	9036	9069	14043	14043					-0.011438995136700214
GSHSMRYF	8	Unmodified	_GSHSMRYF_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-7|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7212829589844	2	492.721444	983.428335	-0.59706	-0.00029418	0.093482	4.6061E-05	-0.50358	-0.00024812	492.7214384034858	26.159	0.26515	26.159	26	26.265	0					11	5	3	0	0	0	0.58597	1	9220	9220		51.335	19.381	1	162360			13839	7903;7768	9037	9070	14044	14044					-0.06404185328312906
GSHTIRDLK	9	Unmodified	_GSHTIRDLK_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7882690429688	2	513.788173	1025.56179	0.017032	8.7508E-06	0.22973	0.00011804	0.24677	0.00012679	513.7883235829772	17.732	0.12883	17.732	17.647	17.776	0					7	3	3	0	0	0	0.01942	1	5047	5047		106.68	47.901	1	422100			13840	7433	9038	9071	14045	14045					0.05003377049024493
GSIAGASASPK	11	Unmodified	_GSIAGASASPK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2528991699219	2	473.253631	944.49271	-0.65602	-0.00031047	1.6977	0.00080346	1.0417	0.000493	473.2533001417083	18.377	0.13605	18.377	18.25	18.386	0					10	5	3	0	0	0	0.21704	1	4784	4784		72.243	24.284	1	78932			13841	1919	9039	9072	14046	14046					0.018242930294718462
GSIAGASASPK	11	Unmodified	_GSIAGASASPK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2535400390625	2	473.253631	944.49271	-0.65829	-0.00031154	0.39102	0.00018505	-0.26728	-0.00012649	473.2537197462229	18.586	0.21692	18.586	18.427	18.644	0					8	4	2	0	0	0	0.067676	1	5741	5741		97.597	32.131	1	401060			13842	1919	9039	9072	14047	14047					0.018242930294718462
GSIAIQGAIEK	11	Unmodified	_GSIAIQGAIEK_					0	0	0		ENSG00000075239|ENST00000265838|ACAT1;ENST00000524833.5_1_11:107992333-108005114:+|nuORF;nc|ENSG00000075239|P24752-2|ACAT1	ENSG00000075239|ENST00000265838|ACAT1	ENSG00000075239|ENST00000265838|ACAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.8765563964844	3	362.876634	1085.60807	-0.075796	-2.7505E-05	-0.14614	-5.3032E-05	-0.22194	-8.0536E-05	362.87653648784806	16.506	0.16628	16.506	16.451	16.617	0					7	3	3	0	0	0	0.65907	1	4595	4595		21.78	0	1	521890			13843	1536	9040	9073	14048	14048					0.06869397160448898
GSIDAITGK	9	Unmodified	_GSIDAITGK_					0	0	0		PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.2372131347656	2	431.23745	860.460347	-0.4916	-0.000212	0.26181	0.0001129	-0.22978	-9.9091E-05	431.23742268398826	26.951	0.20997	26.951	26.879	27.089	0					7	4	2	0	0	0	0.037924	1	9711	9711		101.25	26.998	1	119160			13844	938	9041	9074	14049	14049					0.024535056264767263
GSIDAITGK	9	Unmodified	_GSIDAITGK_					0	0	0		PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.23675537109375	2	431.23745	860.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.826	1	26.826	26.326	27.326	0								0	0	0	0.19847	1	8694	8694		51.193	10.415	1				13845	938	9041	9074	14050	14050					0.024535056264767263
GSIDIQHLK	9	Unmodified	_GSIDIQHLK_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7859191894531	2	505.785099	1009.55564	-0.39248	-0.00019851	0.052564	2.6586E-05	-0.33991	-0.00017192	505.7851761198609	27.838	0.21535	27.838	27.682	27.897	0					12	4	4	0	0	0	0.01873	1	10122	10122		124.08	30.885	1	671710			13846	3493	9042	9075	14051	14051					0.05124858817521272
GSIEINIKK	9	Unmodified	_GSIEINIKK_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.5377502441406	3	334.537842	1000.5917	0.37208	0.00012448	-1.188	-0.00039743	-0.81592	-0.00027296	334.5375020166467	25.584	0.1294	25.584	25.497	25.626	0					9	4	3	0	0	0	0.43426	1	7709	7709		74.255	43.937	1	86280			13847	1342	9043	9076	14052	14052					0.09142315994370165
GSIEINIKK	9	Unmodified	_GSIEINIKK_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3030700683594	2	501.303124	1000.5917	-0.10911	-5.4699E-05	1.2672	0.00063527	1.1581	0.00058057	501.3042272324412	25.837	0.83623	25.837	25.573	26.409	0					43	18	5	0	0	0	0.0071053	1	8857	8857		148.99	0.94383	1	6358200			13848	1342	9043	9076	14053	14053					0.09142315994370165
GSIELGKAKV	10	Unmodified	_GSIELGKAKV_					0	0	0			REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.5374755859375	3	334.537842	1000.5917	0.55334	0.00018511	-0.70885	-0.00023714	-0.15551	-5.2023E-05	334.5375949950371	25.662	0.13953	25.662	25.581	25.72	0					9	3	3	0	0	0	0.63073	1	8182	8182		51.193	14.746	1	308180	+		13849	12174	9044	9077	14054	14054					0.09142315994381534
GSIGGTFAK	9	Unmodified	_GSIGGTFAK_					0	0	0		ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.2266540527344	2	419.226885	836.439217	-0.18902	-7.9242E-05	-0.39208	-0.00016437	-0.5811	-0.00024361	419.2267065861582	24.79	0.18141	24.79	24.677	24.858	0					10	5	3	0	0	0	0.0406	1	7360	7360		98.629	13.714	1	101060			13850	4214	9045	9078	14055	14055					0.014455403176043546
GSIGGTFAK	9	Unmodified	_GSIGGTFAK_					0	0	0		ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2267761230469	2	419.226885	836.439217	0.90435	0.00037913	-0.77591	-0.00032528	0.12844	5.3844E-05	419.2266311145828	25.048	0.31521	25.048	24.89	25.205	0					12	6	3	0	0	0	0.078509	1	8855	8855		85.161	21.855	1	779980			13851	4214	9045	9078	14056	14056					0.014455403176043546
GSIGGTFAK	9	Unmodified	_GSIGGTFAK_					0	0	0		ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2265319824219	2	419.226885	836.439217	0.38421	0.00016107	-0.95125	-0.00039879	-0.56703	-0.00023772	419.2264771961752	25.032	0.26547	25.032	24.974	25.239	0					6	5	2	0	0	0	0.0406	1	8844	8844		98.629	32.2	1	188440			13852	4214	9045	9078	14057	14057					0.014455403176043546
GSIKGELRK	9	Unmodified	_GSIKGELRK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.86956787109375	3	329.869703	986.587279	0.37201	0.00012272	-0.99494	-0.0003282	-0.62293	-0.00020549	329.8693387950298	16.541	0.072866	16.541	16.476	16.549	0					4	2	2	0	0	0	0.35045	1	3780	3780		71.877	0	1	243730			13853	5064	9046	9079	14058	14058					0.09344851571484014
GSIKGELRK	9	Unmodified	_GSIKGELRK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.30084228515625	2	494.300916	986.587279	-0.45519	-0.000225	0.02791	1.3796E-05	-0.42728	-0.00021121	494.3009674522172	16.776	0.20921	16.776	16.691	16.9	0					8	5	2	0	0	0	0.070005	1	4624	4624		88.177	0	1	1032900			13854	5064	9046	9079	14059	14059					0.09344851571484014
GSIKGELRK	9	Unmodified	_GSIKGELRK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.3003234863281	2	494.300916	986.587279	0.66925	0.00033081	-1.5823	-0.00078213	-0.91305	-0.00045132	494.3002187708076	16.753	0.29998	16.753	16.664	16.964	0					18	6	4	0	0	0	0.037712	1	4848	4848		101.46	0	1	1918700			13855	5064	9046	9079	14060	14060					0.09344851571484014
GSIKGELRK	9	Unmodified	_GSIKGELRK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.8699035644531	3	329.869703	986.587279	0.55686	0.00018369	-0.3857	-0.00012723	0.17117	5.6463E-05	329.8697214399118	16.603	0.13044	16.603	16.527	16.657	0					5	3	2	0	0	0	0.22377	1	3970	3970		75.043	0	1	49091			13856	5064	9046	9079	14061	14061					0.09344851571484014
GSIKGELRK	9	Unmodified	_GSIKGELRK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.86968994140625	3	329.869703	986.587279	-0.029226	-9.6406E-06	0.26272	8.6665E-05	0.2335	7.7024E-05	329.869726182226	16.557	0.13038	16.557	16.516	16.646	0					7	3	3	0	0	0	0.26904	1	3965	3965		79.713	0	1	178230			13857	5064	9046	9079	14062	14062					0.09344851571484014
GSIKGELRK	9	Unmodified	_GSIKGELRK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.86962890625	3	329.869703	986.587279	1.6692	0.00055063	-2.3364	-0.00077071	-0.66719	-0.00022008	329.86908268198806	16.788	0.50738	16.788	16.583	17.09	0					19	10	3	0	0	0	0.24095	1	4712	4712		82.75	0	1	2058300			13858	5064	9046	9079	14063	14063					0.09344851571484014
GSISDKFFQK	10	Unmodified	_GSISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.8035888671875	2	578.803488	1155.59242	-0.053897	-3.1196E-05	0.60453	0.00034991	0.55064	0.00031871	578.8037957575508	32.135	0.45938	32.135	32.005	32.464	0					27	11	3	0	0	0	0.00066365	1	11757	11757		185.72	58.257	1	1991600			13859	1815	9047	9080	14064	14064					0.020851106434292888
GSISDKFFQK	10	Unmodified	_GSISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.8025512695312	2	578.803488	1155.59242	-0.098334	-5.6916E-05	0.27975	0.00016192	0.18142	0.00010501	579.3052224074561	31.943	0.10938	31.943	31.849	31.959	0					6	4	2	0	0	0	0.39827	1	10625	10625		56.434	10.462	1	88044			13860	1815	9047	9080	14065	14065					0.020851106434292888
GSISDKFFQK	10	Unmodified	_GSISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.2046813964844	3	386.204751	1155.59242	0.17726	6.846E-05	-0.066857	-2.5821E-05	0.11041	4.2639E-05	386.20472548241514	32.149	0.30444	32.149	32.001	32.306	0					17	6	4	0	0	0	0.15878	1	12179	12179		140.11	65.947	1	760000			13861	1815	9047	9080	14066	14066					0.020851106434292888
GSISDKFFQK	10	Unmodified	_GSISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.803955078125	2	578.803488	1155.59242	-0.4106	-0.00023766	1.1193	0.00064783	0.70867	0.00041018	578.804046908263	32.117	0.38573	32.117	32.015	32.401	0					16	8	3	0	0	0	0.041742	1	12167	12167		112.11	39.228	1	722980			13862	1815	9047	9080	14067	14067					0.020851106434292888
GSISDKFFQK	10	Unmodified	_GSISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.8038940429688	2	578.803488	1155.59242	-1.6667	-0.00096468	1.8404	0.0010652	0.17369	0.00010053	578.8043924813984	31.918	0.27028	31.918	31.806	32.076	0					15	8	2	0	0	0	0.19191	1	11022	11022		80.455	18.347	1	165350			13863	1815	9047	9080	14068	14068					0.020851106434292888
GSKGWGWKVR	10	Unmodified	_GSKGWGWKVR_					0	0	0			REV__ENST00000371142.8_1_10:98280477-98280525:-|nuORF	REV__ENST00000371142.8_1_10:98280477-98280525:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.8193969726562	2	580.819807	1159.62506	-0.028415	-1.6504E-05	-0.69987	-0.0004065	-0.72828	-0.000423	580.8194456047835	21.025	1.39	21.025	20.685	22.075	0					55	32	3	0	0	0	0.59277	1	6677	6677		35.152	2.3396	1	240980	+		13864	18646	9049	9081	14069	14069					0.051633625569365904
GSKQILHA	8	Unmodified	_GSKQILHA_					0	0	0			REV__GPRC6A|p.V453Lfs*6|1|0.08|ENSG00000173612|chr6:116800775-116800776|-/TAAG|frameshift_variant	REV__GPRC6A|p.V453Lfs*6|1|0.08|ENSG00000173612|chr6:116800775-116800776|-/TAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.21484375	2	427.248152	852.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.558	1	27.558	27.058	28.058	0								0	0	0	1.7419	1	9998	9998		30.504	0	1		+		13865	16524	9050	9082	14070	14070					0.0496093544585392
GSLASVYHK	9	Unmodified	_GSLASVYHK_					0	0	0		AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;ENST00000588116.1_1_17:33977635-33977996:+|nuORF	AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.258544921875	2	481.258717	960.50288	-0.37061	-0.00017836	-0.033179	-1.5968E-05	-0.40379	-0.00019433	481.2586896881417	21.883	0.27355	21.883	21.766	22.04	0					20	8	4	0	0	0	0.021961	1	6344	6344		118.74	19.368	1	1269800			13866	176	9051	9083	14071	14071					0.02104900754704886
GSLASVYHK	9	Unmodified	_GSLASVYHK_					0	0	0		AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;ENST00000588116.1_1_17:33977635-33977996:+|nuORF	AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.258544921875	2	481.258717	960.50288	-0.532	-0.00025603	0.019391	9.3322E-06	-0.51261	-0.0002467	481.2587093196275	22.09	0.36263	22.09	21.939	22.302	0					21	7	4	0	0	0	0.0061615	1	7413	7413		153.04	46.621	1	4996300			13867	176	9051	9083	14072	14072					0.02104900754704886
GSLDAFLRK	9	Unmodified	_GSLDAFLRK_					0	0	0		EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant	EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.78753662109375	2	503.787641	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.555	1	22.555	22.055	23.055	0								0	0	0	0.2591	1	6657	6657		42.396	23.036	1				13868	2961	9052	9084	14073	14073					0.058171626801254206
GSLDKTHGP	9	Unmodified	_GSLDKTHGP_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.232177734375	2	456.232699	910.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.985	1	18.985	18.485	19.485	0								0	0	0	0.30504	1	4826	4826		34.173	6.2903	1		+		13869	16139	9053	9085	14074	14074					-0.007962626590483524
GSLDQVLKK	9	Unmodified	_GSLDQVLKK_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF;MAP2K1|p.A284Gfs*2|1|0.06|ENSG00000169032|chr15:66485144-66485145|-/T|frameshift_variant;ENSG00000169032|ENST00000307102|MAP2K1	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.8658142089844	3	329.865958	986.576045	0.98663	0.00032546	-1.263	-0.00041663	-0.27641	-9.1177E-05	329.8654827017706	26.607	0.19546	26.607	26.507	26.702	0					7	4	2	0	0	0	0.4966	1	9187	9187		47.96	0.30219	1	213290			13870	6141	9054	9086	14075	14075					0.08222029477337855
GSLDQVLKK	9	Unmodified	_GSLDQVLKK_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF;MAP2K1|p.A284Gfs*2|1|0.06|ENSG00000169032|chr15:66485144-66485145|-/T|frameshift_variant;ENSG00000169032|ENST00000307102|MAP2K1	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2951354980469	2	494.295299	986.576045	-0.4497	-0.00022228	0.2808	0.0001388	-0.16889	-8.3482E-05	494.29543858966343	26.572	0.32405	26.572	26.481	26.805	0					20	7	4	0	0	0	0.0049871	1	9192	9192		158.07	0.74555	1	2425000			13871	6141	9054	9086	14076	14076					0.08222029477337855
GSLDQVLKK	9	Unmodified	_GSLDQVLKK_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF;MAP2K1|p.A284Gfs*2|1|0.06|ENSG00000169032|chr15:66485144-66485145|-/T|frameshift_variant;ENSG00000169032|ENST00000307102|MAP2K1	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2958068847656	2	494.295299	986.576045	-1.6121	-0.00079687	1.5891	0.00078548	-0.023051	-1.1394E-05	494.29624452820707	26.346	0.20304	26.346	26.258	26.461	0					11	6	2	0	0	0	0.020674	1	8264	8264		120.87	3.9648	1	398780			13872	6141	9054	9086	14077	14077					0.08222029477337855
GSLEKSVTK	9	Unmodified	_GSLEKSVTK_					0	0	0		nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENSG00000149262|ENST00000534064|INTS4	nc|ENSG00000149262|Q96HW7-2|INTS4	nc|ENSG00000149262|Q96HW7-2|INTS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7720031738281	2	474.771657	947.528761	-0.011147	-5.2923E-06	0.32804	0.00015575	0.3169	0.00015045	474.771788282555	16.969	0.092194	16.969	16.93	17.023	0					5	3	2	0	0	0	0.21419	1	3962	3962		59.931	10.489	1	70964			13873	4871	9055	9087	14078	14078					0.05289750206327426
GSLFLQTPK	9	Unmodified	_GSLFLQTPK_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000470280.1_1_12:21796836-21807485:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.784423828125	2	495.784567	989.554582	-0.062224	-3.085E-05	-0.14878	-7.3762E-05	-0.211	-0.00010461	495.7844388991544	36.059	0.38204	36.059	35.854	36.236	0					41	18	3	0	0	0	0.093587	1	11813	11813		83.647	30.296	1	389730			13874	2690	9056	9088	14079	14079					0.0593864444861083
GSLFLQTPK	9	Unmodified	_GSLFLQTPK_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000470280.1_1_12:21796836-21807485:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7842712402344	2	495.784567	989.554582	-0.37968	-0.00018824	0.056596	2.8059E-05	-0.32308	-0.00016018	495.78458883233316	36.339	0.81625	36.339	35.779	36.595	0					40	22	3	0	0	0	0.037098	2	13657	13657;13674		99.013	99.013	1	1378900			13875	2690	9056	9088	14080;14081	14080					0.0593864444861083
GSLFLQTPK	9	Unmodified	_GSLFLQTPK_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000470280.1_1_12:21796836-21807485:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7845153808594	2	495.784567	989.554582	-0.7634	-0.00037848	1.0626	0.0005268	0.29916	0.00014832	495.7849533455156	36.343	0.49605	36.343	36.101	36.597	0					24	14	2	0	0	0	0.093587	1	14087	14087		83.647	34.205	1	976250			13876	2690	9056	9088	14082	14082					0.0593864444861083
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.80609130859375	2	509.805834	1017.59712	-0.11169	-5.694E-05	0.046456	2.3684E-05	-0.065233	-3.3256E-05	509.805836015717	28.91	0.39447	28.91	28.702	29.097	0					32	14	3	0	0	0	0.040209	1	9024	9024		82.75	40.354	1	455350			13877	11531	9057	9089	14083	14083					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.80572509765625	2	509.805834	1017.59712	-0.01329	-6.7756E-06	-0.18297	-9.3279E-05	-0.19626	-0.00010005	509.8057601434921	29.204	0.82	29.204	28.835	29.655	0					49	20	4	0	0	0	0.058553	1	10338	10338		85.862	11.887	1	2665100			13878	11531	9057	9089	14084	14084					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.2062683105469	3	340.206315	1017.59712	0.5111	0.00017388	-0.77869	-0.00026492	-0.26759	-9.1036E-05	340.2060531213154	29.186	0.32798	29.186	28.957	29.285	0					19	8	3	0	0	0	0.50858	1	10360	10360		31.53	5.9558	1	425930			13879	11531	9057	9089	14085	14085					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.8048400878906	2	509.805834	1017.59712	-0.34414	-0.00017544	0.17862	9.1062E-05	-0.16552	-8.4381E-05	509.80591049351057	28.901	0.50555	28.901	28.708	29.214	0					50	19	4	0	0	0	0.040209	2	9309	9309;9451		82.75	40.354	1	926520			13880	11531	9057	9089	14086;14087	14086					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.805908203125	2	509.805834	1017.59712	-0.41451	-0.00021132	0.3175	0.00016186	-0.097012	-4.9457E-05	509.8059942589146	29.138	1.0054	29.138	28.846	29.851	0					64	21	5	0	0	0	0.014648	2	10699	10699;10871		114.89	30.161	1	5294400			13881	11531	9057	9089	14088;14089	14088					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	340.2062072753906	3	340.206315	1017.59712	-1.9359	-0.00065861	1.9319	0.00065725	-0.0039834	-1.3552E-06	340.20698218933364	28.961	0.2732	28.961	28.78	29.054	0					11	6	2	0	0	0	0.5741	1	9671	9671		24.519	2.8334	1	230460			13882	11531	9057	9089	14090	14090					0.08902039576855714
GSLGFLVGRI	10	Unmodified	_GSLGFLVGRI_					0	0	0		ENST00000542104.5_2_12:65089076-65089520:+|nuORF	ENST00000542104.5_2_12:65089076-65089520:+|nuORF	ENST00000542104.5_2_12:65089076-65089520:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.20623779296875	3	340.206315	1017.59712	3.0209	0.0010277	-4.1537	-0.0014131	-1.1328	-0.00038539	340.20487119764874	29.134	0.90768	29.134	28.624	29.532	0					42	18	4	0	0	0	0.52275	1	10623	10623		42.864	0.46813	1	2092300			13883	10548	9058	9090	14091	14091					0.08902039576844345
GSLGFTVTK	9	Unmodified	_GSLGFTVTK_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.25537109375	2	455.255643	908.496732	-0.36985	-0.00016837	-0.26892	-0.00012243	-0.63877	-0.0002908	455.2554898361019	31.951	0.25718	31.951	31.865	32.122	0					23	10	4	0	0	0	0.035106	1	10288	10288		104.01	41.906	1	493060			13884	5584	9059	9091	14092	14092					0.038823825231816045
GSLGFTVTK	9	Unmodified	_GSLGFTVTK_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2555236816406	2	455.255643	908.496732	-0.58221	-0.00026505	0.14048	6.3953E-05	-0.44173	-0.0002011	455.2557558374159	32.232	0.37623	32.232	32.127	32.503	0					25	9	4	0	0	0	0.017421	1	11796	11796		126.24	46.53	1	1995400			13885	5584	9059	9091	14093	14093					0.038823825231816045
GSLGFTVTK	9	Unmodified	_GSLGFTVTK_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.25506591796875	2	455.255643	908.496732	-1.1125	-0.00050648	0.16534	7.5272E-05	-0.94717	-0.0004312	455.2557894896921	31.994	0.2368	31.994	31.924	32.161	0					16	9	2	0	0	0	0.10506	1	10636	10636		78.264	26.928	1	314960			13886	5584	9059	9091	14094	14094					0.038823825231816045
GSLGFTVTK	9	Unmodified	_GSLGFTVTK_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.25531005859375	2	455.255643	908.496732	-0.52111	-0.00023724	-0.072161	-3.2852E-05	-0.59327	-0.00027009	455.25561487679437	32.216	0.29222	32.216	32.109	32.401	0					18	6	4	0	0	0	0.011389	1	12210	12210		138.06	39.433	1	1218100			13887	5584	9059	9091	14095	14095					0.038823825231816045
GSLGGQINK	9	Unmodified	_GSLGGQINK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.24285888671875	2	437.243067	872.47158	-0.27854	-0.00012179	-0.23579	-0.0001031	-0.51432	-0.00022488	437.242928301326	20.378	0.19279	20.378	20.267	20.459	0					15	6	3	0	0	0	0.021961	1	5418	5418		118.74	1.8395	1	703880			13888	8001	9060	9092	14096	14096					0.03024327720618203
GSLGGQINK	9	Unmodified	_GSLGGQINK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2427673339844	2	437.243067	872.47158	-0.39888	-0.00017441	0.28137	0.00012303	-0.1175	-5.1378E-05	437.2432005245456	20.693	0.29694	20.693	20.551	20.848	0					18	6	4	0	0	0	4.6916E-08	1	6450	6450		211.39	44.606	1	5017200			13889	8001	9060	9092	14097	14097					0.03024327720618203
GSLGGQINK	9	Unmodified	_GSLGGQINK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2425537109375	2	437.243067	872.47158	-1.0275	-0.00044926	0.61522	0.000269	-0.41227	-0.00018026	437.2434024920517	20.395	0.20933	20.395	20.315	20.525	0					10	6	3	0	0	0	0.016683	1	5676	5676		127.46	25.861	1	595720			13890	8001	9060	9092	14098	14098					0.03024327720618203
GSLGGQINK	9	Unmodified	_GSLGGQINK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2428894042969	2	437.243067	872.47158	0.29986	0.00013111	-0.68137	-0.00029792	-0.38151	-0.00016681	437.24277578446674	20.604	0.26844	20.604	20.495	20.764	0					12	5	3	0	0	0	4.6916E-08	1	6712	6712		211.39	13.789	1	2986800			13891	8001	9060	9092	14099	14099					0.03024327720618203
GSLGIAGPPG	10	Unmodified	_GSLGIAGPPG_					0	0	0		COL1A2|p.P896S|1|0.27|ENSG00000164692|chr7:94425129-94425129|C/T|missense_variant	COL1A2|p.P896S|1|0.27|ENSG00000164692|chr7:94425129-94425129|C/T|missense_variant	COL1A2|p.P896S|1|0.27|ENSG00000164692|chr7:94425129-94425129|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.2266845703125	2	413.226885	824.439217	-0.15749	-6.5078E-05	-0.094831	-3.9187E-05	-0.25232	-0.00010427	413.22683716377435	15.438	1.2334	15.438	15.086	16.32	0					109	51	3	0	0	0	0.63073	1	3434	3434		30.504	1.3541	1	747550			13892	601	9061	9093	14100	14100					0.019975403176204054
GSLGQTVGAPA	11	Unmodified	_GSLGQTVGAPA_					0	0	0		ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000165821|ENST00000537235|SALL2	ENSG00000165821|ENST00000537235|SALL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2530517578125	2	479.253631	956.49271	0.024614	1.1796E-05	-0.50119	-0.0002402	-0.47658	-0.0002284	479.25348403476033	26.165	0.30449	26.165	26.034	26.338	0					23	10	3	0	0	0	0.60656	1	7893	7893		36.447	1.2947	1	210910			13893	5834	9062	9094	14101	14101					0.012722930294785328
GSLGRVLLP	9	Unmodified	_GSLGRVLLP_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.2867736816406	2	456.287277	910.560001	0.19436	8.8682E-05	-1.0815	-0.00049347	-0.88714	-0.00040479	456.2867949906123	32.242	0.21262	32.242	32.076	32.289	0					14	6	3	0	0	0	0.45358	1	11155	11155		37.159	9.2769	1	108760			13894	3294	9063	9095	14102	14102					0.10114368031076992
GSLGSLLGR	9	Unmodified	_GSLGSLLGR_					0	0	0			REV__ENST00000247087.9_1_1:27875205-27875379:-|nuORF	REV__ENST00000247087.9_1_1:27875205-27875379:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2525939941406	2	430.253434	858.492316	-0.24573	-0.00010573	-1.0915	-0.00046962	-1.3372	-0.00057535	430.2529903930763	28.205	0.075388	28.205	28.144	28.219	0					4	2	2	0	0	0	0.24095	1	8782	8782		56.721	0	1	56928	+		13895	12116	9064	9096	14103	14103					0.057409181002867626
GSLKPHDYPK	10	Unmodified	_GSLKPHDYPK_					0	0	0		nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH	nc|ENSG00000107537|O14832-2|PHYH	nc|ENSG00000107537|O14832-2|PHYH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.20465087890625	3	381.204862	1140.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.641	1	17.641	17.141	18.141	0								0	0	0	0.28607	1	4246	4246		53.089	13.031	1				13896	2484	9065	9097	14104	14104					0.028085303632678915
GSLKPHDYPK	10	Unmodified	_GSLKPHDYPK_					0	0	0		nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH	nc|ENSG00000107537|O14832-2|PHYH	nc|ENSG00000107537|O14832-2|PHYH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.20489501953125	3	381.204862	1140.59276	0.14414	5.4947E-05	-0.16074	-6.1274E-05	-0.016597	-6.327E-06	381.20485212175896	17.934	0.14749	17.934	17.844	17.992	0					6	3	2	0	0	0	0.20981	1	5165	5165		78.264	41.817	1	1021900			13897	2484	9065	9097	14105	14105					0.028085303632678915
GSLKPHDYPK	10	Unmodified	_GSLKPHDYPK_					0	0	0		nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH	nc|ENSG00000107537|O14832-2|PHYH	nc|ENSG00000107537|O14832-2|PHYH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.2048034667969	3	381.204862	1140.59276	0.45356	0.0001729	-0.41965	-0.00015997	0.033916	1.2929E-05	381.20464331103426	17.879	0.21906	17.879	17.819	18.038	0					8	4	3	0	0	0	0.06456	1	5402	5402		104.42	61.559	1	501280			13898	2484	9065	9097	14106	14106					0.028085303632678915
GSLKQFLKK	9	Unmodified	_GSLKQFLKK_					0	0	0		ENSG00000185189|ENST00000442628|NRBP2;ENST00000493768.5_1_2:27657358-27657630:+|nuORF;ENST00000529747.5_1_8:144921838-144922003:-|nuORF;ENST00000493746.1_1_2:27657358-27658741:+|nuORF;nc|ENSG00000185189|Q9NSY0-5|NRBP2;ENST00000533093.5_1_8:144921838-144923057:-|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENSG00000185189|ENST00000442628|NRBP2	ENSG00000185189|ENST00000442628|NRBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.22216796875	3	350.221965	1047.64407	-0.82261	-0.0002881	0.6259	0.0002192	-0.19671	-6.8891E-05	350.2222041795839	23.708	0.22091	23.708	23.612	23.833	0					16	7	3	0	0	0	0.39215	1	7151	7151		67.494	33.321	1	140810			13899	7063	9066	9098	14107	14107					0.12214899127980061
GSLMLKVVQ	9	Oxidation (M)	_GSLM(Oxidation (M))LKVVQ_		GSLM(1)LKVVQ		GSLM(66)LKVVQ	0	0	1			REV__ENST00000491277.1_1_1:214705434-214705560:-|nuORF	REV__ENST00000491277.1_1_1:214705434-214705560:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.28387451171875	2	495.786253	989.557952	-2.4081	-0.0011939	-1.1949	-0.0005924	-3.603	-0.0017863	495.7857322141396	36.064	0.37063	36.064	35.925	36.295	0					22	13	2	0	0	0	0.16002	2	12857	12857;12866		66.429	24.033	1	306940	+		13900	19719	9067	9099	14108;14109	14108		719			0.06275571230992227
GSLNHAASK	9	Unmodified	_GSLNHAASK_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7324523925781	2	442.732866	883.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.867	1	12.867	12.367	13.367	0								0	0	0	0.023427	1	3000	3000		99.013	32.584	1				13901	1151	9068	9100	14110	14110					0.004791570608063012
GSLNHAASK	9	Unmodified	_GSLNHAASK_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7325134277344	2	442.732866	883.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.812	1	12.812	12.312	13.312	0								0	0	0	0.11159	1	2821	2821		68.846	17.511	1				13902	1151	9068	9100	14111	14111					0.004791570608063012
GSLNVTLEH	9	Unmodified	_GSLNVTLEH_					0	0	0		nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;ENSG00000119772|ENST00000321117|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2538146972656	2	485.253631	968.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.264	1	31.264	30.764	31.764	0								0	0	0	0.13425	1	10346	10346		63.534	8.7575	1				13903	3139	9069	9101	14112	14112					0.0072029302948521945
GSLNWVPVTK	10	Unmodified	_GSLNWVPVTK_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8089599609375	2	550.808574	1099.60259	0.55901	0.00030791	0.92316	0.00050849	1.4822	0.00081639	550.8089078382318	38.733	0.26817	38.733	38.68	38.948	0					18	10	2	0	0	0	0.15289	2	14749	14735;14749		81.525	35.553	1	326240			13904	11703	9070	9102	14113;14114	14114					0.056777183686335775
GSLNWVPVTK	10	Unmodified	_GSLNWVPVTK_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.810546875	2	550.808574	1099.60259	0.29983	0.00016515	1.0788	0.0005942	1.3786	0.00075935	550.8090520860545	38.498	0.2501	38.498	38.413	38.664	0					31	13	3	0	0	0	0.52848	1	12968	12968		45.022	7.8631	1	184100			13905	11703	9070	9102	14115	14115					0.056777183686335775
GSLNWVPVTK	10	Unmodified	_GSLNWVPVTK_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.809326171875	2	550.808574	1099.60259	1.6642	0.00091668	-0.64066	-0.00035288	1.0236	0.0005638	550.8081791679734	38.71	0.4275	38.71	38.596	39.024	0					44	15	4	0	0	0	0.046394	1	15178	15178		99.013	36.906	1	1766200			13906	11703	9070	9102	14116	14116					0.056777183686335775
GSLNWVPVTK	10	Unmodified	_GSLNWVPVTK_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8095092773438	2	550.808574	1099.60259	1.1517	0.00063437	-0.089098	-4.9076E-05	1.0626	0.00058529	550.8087102840041	38.497	0.23255	38.497	38.378	38.611	0					27	11	3	0	0	0	0.31405	1	13751	13751		53.597	2.4042	1	184340			13907	11703	9070	9102	14117	14117					0.056777183686335775
GSLNWVPVTK	10	Unmodified	_GSLNWVPVTK_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8094482421875	2	550.808574	1099.60259	1.8164	0.0010005	-0.87596	-0.00048249	0.9404	0.00051798	550.8080416837056	38.686	0.41031	38.686	38.526	38.937	0					27	8	4	0	0	0	0.0085055	1	15195	15195		150.81	74.036	1	2589900			13908	11703	9070	9102	14118	14118					0.056777183686335775
GSLPGDKIRNK	11	Unmodified	_GSLPGDKIRNK_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.8416137695312	2	592.840936	1183.66732	0.28348	0.00016806	0.71314	0.00042278	0.99662	0.00059084	592.8413000392001	18.679	0.21456	18.679	18.588	18.803	0					10	5	3	0	0	0	0.27262	1	5515	5515		65.157	5.039	1	380370			13909	6967	9071	9103	14119	14119					0.08283293174645223
GSLPVCQLTY	10	Unmodified	_GSLPVCQLTY_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2949829101562	2	540.773342	1079.53213	1.3934	0.00075354	1.911	0.0010334	3.3045	0.001787	540.7746123855788	16.489	0.11636	16.489	16.43	16.547	0					4	2	2	0	0	0	0.58189	1	4711	4711		36.447	5.9431	1	75101	+		13910	17500	9072	9104	14120	14120					-0.004453230113085738
GSLQPLPWL	9	Unmodified	_GSLQPLPWL_					0	0	0		ENST00000486124.5_1_6:31905151-31913001:+|nuORF	ENST00000486124.5_1_6:31905151-31913001:+|nuORF	ENST00000486124.5_1_6:31905151-31913001:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	337.5270690917969	3	337.527165	1009.55967	-0.047013	-1.5868E-05	-0.21267	-7.1783E-05	-0.25969	-8.7651E-05	337.5271068547249	22.579	0.19422	22.579	22.471	22.665	0					8	4	2	0	0	0	0.61124	1	6755	6755		19.104	0	1	178400			13911	10016	9073	9105	14121	14121					0.055269483112283524
GSLRDSALFVK	11	Unmodified	_GSLRDSALFVK_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	398.2278747558594	3	398.227667	1191.66117	0.92203	0.00036718	-1.0332	-0.00041146	-0.1112	-4.4282E-05	398.2273370313528	32.142	0.37539	32.142	32.018	32.393	0					16	9	3	0	0	0	0.38582	1	11787	11787		53.013	13.14	1	313940			13912	6776	9074	9106	14122	14122					0.073007749431099
GSLRDSALFVK	11	Unmodified	_GSLRDSALFVK_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.22760009765625	3	398.227667	1191.66117	0.37558	0.00014957	-0.53721	-0.00021393	-0.16162	-6.4362E-05	398.22738314418433	32.061	0.31739	32.061	31.952	32.27	0					15	6	4	0	0	0	0.29048	1	12064	12064		63.694	22.585	1	368180			13913	6776	9074	9106	14123	14123					0.073007749431099
GSLRLRGPTVE	11	Unmodified	_GSLRLRGPTVE_					0	0	0			REV__ENST00000375272.5_1_2:171673404-171675102:+|nuORF	REV__ENST00000375272.5_1_2:171673404-171675102:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.5627746582031	3	395.56305	1183.66732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.393	1	18.393	17.893	18.893	0								0	0	0	0.45674	1	4569	4569		18.531	0.69791	1		+		13914	18706	9075	9107	14124	14124					0.0828329317466796
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	344.5375061035156	3	344.538064	1030.59236	0.19927	6.8656E-05	-0.18236	-6.2831E-05	0.016907	5.8252E-06	344.5379956074412	24.071	0.32902	24.071	23.946	24.275	0					24	10	4	0	0	0	0.22377	1	7022	7022		75.043	25.507	1	427980			13915	2732	9076	9108	14125	14125					0.07829155434069435
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.3043823242188	2	516.303458	1030.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.079	1	24.079	23.579	24.579	0								0	0	0	0.099216	1	7056	7056		71.877	27.761	1				13916	2732	9076	9108	14126	14126					0.07829155434069435
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.5379333496094	3	344.538064	1030.59236	0.5049	0.00017396	-0.56149	-0.00019345	-0.056587	-1.9496E-05	344.53783708941694	24.355	0.53622	24.355	24.204	24.741	0					38	12	5	0	0	0	0.27249	1	8176	8176		88.177	46.75	1	2615400			13917	2732	9076	9108	14127	14127					0.07829155434069435
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.3034057617188	2	516.303458	1030.59236	0.036733	1.8966E-05	0.31219	0.00016119	0.34893	0.00018015	516.3033692567996	24.379	0.32841	24.379	24.204	24.533	0					18	7	3	0	0	0	0.24334	1	8199	8199		56.434	0.92959	1	801090			13918	2732	9076	9108	14128	14128					0.07829155434069435
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.3037719726562	2	516.303458	1030.59236	-0.039279	-2.028E-05	0.6307	0.00032563	0.59142	0.00030535	516.3037133516225	24.122	0.39205	24.122	23.96	24.352	0					31	12	3	0	0	0	0.15163	1	7316	7316		67.494	8.7117	1	837870			13919	2732	9076	9108	14129	14129					0.07829155434069435
GSLSIATEK	9	Unmodified	_GSLSIATEK_					0	0	0		ENST00000529906.5_1_11:59944867-59947426:-|nuORF;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A;MS4A6A|p.T185Sfs*29|1|0.24|ENSG00000110077|chr11:60173125-60173126|GT/-|frameshift_variant;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;ENST00000525549.5_1_11:59945684-59950490:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2503356933594	2	453.250557	904.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.167	1	25.167	24.667	25.667	0								0	0	0	0.024296	1	8564	8564		98.582	2.3916	1				13920	2609	9077	9109	14130	14130					0.030497747979552514
GSLSIATEK	9	Unmodified	_GSLSIATEK_					0	0	0		ENST00000529906.5_1_11:59944867-59947426:-|nuORF;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A;MS4A6A|p.T185Sfs*29|1|0.24|ENSG00000110077|chr11:60173125-60173126|GT/-|frameshift_variant;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;ENST00000525549.5_1_11:59945684-59950490:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2505798339844	2	453.250557	904.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.897	1	24.897	24.397	25.397	0								0	0	0	0.10319	1	7676	7676		70.816	6.6089	1				13921	2609	9077	9109	14131	14131					0.030497747979552514
GSLSIATEK	9	Unmodified	_GSLSIATEK_					0	0	0		ENST00000529906.5_1_11:59944867-59947426:-|nuORF;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A;MS4A6A|p.T185Sfs*29|1|0.24|ENSG00000110077|chr11:60173125-60173126|GT/-|frameshift_variant;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;ENST00000525549.5_1_11:59945684-59950490:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.25030517578125	2	453.250557	904.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.971	1	24.971	24.471	25.471	0								0	0	0	0.077333	1	7870	7870		78.264	14.057	1				13922	2609	9077	9109	14132	14132					0.030497747979552514
GSLSPDAHLP	10	Unmodified	_GSLSPDAHLP_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000136367|Q9C0A1-2|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.8392333984375	3	331.83818	992.49271	1.6501	0.00054756	1.4383	0.00047728	3.0884	0.0010248	331.83868478923074	16.392	0.1173	16.392	16.333	16.451	0					4	2	2	0	0	0	0.64178	1	4544	4544		27.047	1.4733	1	317280			13923	4074	9078	9110	14133	14133					-0.003837069705241447
GSMATAPQGL	10	Unmodified	_GSMATAPQGL_					0	0	0		nc|ENSG00000221819|O95177|GAS8-AS1	nc|ENSG00000221819|O95177|GAS8-AS1	nc|ENSG00000221819|O95177|GAS8-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7287902832031	2	466.728935	931.443317	-2.2398	-0.0010454	1.5095	0.00070452	-0.73034	-0.00034087	466.7296668485179	41.995	0.15717	41.995	41.942	42.099	0					15	9	2	0	0	0	0.52275	1	14726	14726		42.864	0	1	90377			13924	11767	9079	9111	14134	14134					-0.025147382509771887
GSMGSFSEK	9	Oxidation (M)	_GSM(Oxidation (M))GSFSEK_		GSM(1)GSFSEK		GSM(40)GSFSEK	0	0	1		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2026672363281	2	473.20275	944.390947	0.24699	0.00011687	-0.61977	-0.00029328	-0.37278	-0.0001764	473.20244775801126	17.588	0.55052	17.588	17.499	18.05	0					20	13	3	0	0	0	0.41958	1	5019	5019		40.058	8.1033	1	257540			13925	908	9080	9112	14135	14135		41			-0.08347321384587758
GSMGSFSEK	9	Unmodified	_GSMGSFSEK_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2051696777344	2	465.205292	928.396032	-0.68201	-0.00031727	-0.11127	-5.1765E-05	-0.79328	-0.00036904	465.2053573170925	23.601	0.35872	23.601	23.473	23.832	0					24	8	5	0	0	0	0.054723	1	7822	7822		93.598	3.2278	1	1831700			13926	908	9080	9113	14136	14136					-0.07103017521978927
GSMGSFSEK	9	Unmodified	_GSMGSFSEK_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.205078125	2	465.205292	928.396032	0.67838	0.00031559	-1.3438	-0.00062513	-0.66539	-0.00030954	465.2047982169931	23.553	0.46861	23.553	23.395	23.864	0					24	9	4	0	0	0	0.047855	1	8117	8117		96.034	8.3372	1	6367600			13927	908	9080	9113	14137	14137					-0.07103017521978927
GSMGSFSEK	9	Unmodified	_GSMGSFSEK_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2049255371094	2	465.205292	928.396032	-2.311	-0.0010751	1.4506	0.00067485	-0.86036	-0.00040024	465.2061472945508	23.381	0.38891	23.381	23.284	23.673	0					22	9	4	0	0	0	0.076532	1	7113	7113		85.862	8.5442	1	1381000			13928	908	9080	9113	14138	14138					-0.07103017521978927
GSMKENISK	9	Unmodified	_GSMKENISK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2550048828125	2	497.255317	992.49608	-0.02916	-1.45E-05	-0.56424	-0.00028057	-0.5934	-0.00029507	497.2550073022562	16.388	0.21712	16.388	16.28	16.497	0					7	4	2	0	0	0	0.0079272	1	4683	4683		145.46	1.5739	1	2191200			13929	1181	9081	9114	14139	14139					-0.000467801881768537
GSMKENISK	9	Unmodified	_GSMKENISK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2550048828125	2	497.255317	992.49608	-0.10701	-5.3211E-05	-0.53245	-0.00026477	-0.63946	-0.00031798	497.2549070374735	16.212	0.12068	16.212	16.132	16.253	0					5	3	2	0	0	0	0.040209	1	3788	3788		99.013	0.38357	1	96580			13930	1181	9081	9114	14140	14140					-0.000467801881768537
GSMKENISK	9	Unmodified	_GSMKENISK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2548522949219	2	497.255317	992.49608	-0.70566	-0.00035089	-0.2057	-0.00010229	-0.91137	-0.00045318	497.2553798716541	16.409	0.21509	16.409	16.3	16.515	0					9	4	3	0	0	0	0.011893	1	4528	4528		136.99	5.3729	1	1347000			13931	1181	9081	9114	14141	14141					-0.000467801881768537
GSMRCQKK	8	Carbamidomethyl (C),Oxidation (M)	_GSM(Oxidation (M))RC(Carbamidomethyl (C))QKK_	GSMRC(1)QKK	GSM(1)RCQKK	GSMRC(56)QKK	GSM(56)RCQKK	0	1	1		nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP;KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant;KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant;KCP|p.D914Tfs*111|1|0.3|ENSG00000135253|chr7:128885218-128885218|G/-|frameshift_variant;KCP|p.Q841Ifs*185|1|0.15|ENSG00000135253|chr7:128886727-128886728|-/TC|frameshift_variant	nc|ENSG00000135253|Q6ZWJ8|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7455749511719	2	505.747136	1009.47972	-0.39811	-0.00020134	-2.0216	-0.0010224	-2.4197	-0.0012238	505.74595369816694	12.379	0.091415	12.379	12.293	12.384	0					4	2	2	0	0	0	0.54629	1	2756	2756		55.504	13.03	1	340460			13932	3979	9082	9115	14142	14142	170	163			-0.024641846259214617
GSMRIFTKK	9	Unmodified	_GSMRIFTKK_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.5392150878906	3	356.539188	1066.59573	0.71742	0.00025579	-1.256	-0.0004478	-0.53853	-0.00019201	356.53880073536607	20.617	0.34067	20.617	20.522	20.863	0					13	7	3	0	0	0	0.12834	1	6417	6417		89.029	51.217	1	805240			13933	6132	9083	9116	14143	14143					0.06510082216436786
GSMRIFTKK	9	Unmodified	_GSMRIFTKK_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	356.5395812988281	3	356.539188	1066.59573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.362	1	20.362	19.862	20.862	0								0	0	0	0.37233	1	5672	5672		26.063	7.739	1				13934	6132	9083	9116	14144	14144					0.06510082216436786
GSMRIFTKK	9	Unmodified	_GSMRIFTKK_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	356.53912353515625	3	356.539188	1066.59573	0.30764	0.00010968	-0.90709	-0.00032341	-0.59945	-0.00021373	356.53896614276215	20.487	0.16705	20.487	20.428	20.595	0					10	3	4	0	0	0	0.095583	1	6657	6657		96.665	43.728	1	1057300			13935	6132	9083	9116	14145	14145					0.06510082216436786
GSMRIFTKK	9	Unmodified	_GSMRIFTKK_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	356.5389709472656	3	356.539188	1066.59573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.356	1	20.356	19.856	20.856	0								0	0	0	0.37233	1	5708	5708		26.063	12.609	1				13936	6132	9083	9116	14146	14146					0.06510082216436786
GSMRIFTKK	9	Unmodified	_GSMRIFTKK_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.53912353515625	3	356.539188	1066.59573	-0.058081	-2.0708E-05	-0.18009	-6.421E-05	-0.23817	-8.4918E-05	356.53911948613535	20.503	0.31625	20.503	20.443	20.759	0					12	6	2	0	0	0	0.25761	1	6532	6532		70.399	32.587	1	1670400			13937	6132	9083	9116	14147	14147					0.06510082216436786
GSMSTVVSTK	10	Unmodified	_GSMSTVVSTK_					0	0	0		RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.75445556640625	2	498.755149	995.495746	-1.2483	-0.00062262	0.51897	0.00025884	-0.72937	-0.00036378	498.75525845498	22.815	0.084692	22.815	22.762	22.847	0					6	3	2	0	0	0	0.28855	1	6773	6773		68.626	8.5075	1	121530			13938	5684	9084	9117	14148	14148					-0.0021819990803351175
GSMSTVVSTK	10	Unmodified	_GSMSTVVSTK_					0	0	0		RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.75494384765625	2	498.755149	995.495746	-0.67853	-0.00033842	0.34388	0.00017151	-0.33465	-0.00016691	498.75532114033774	23.001	0.16729	23.001	22.927	23.095	0					8	3	3	0	0	0	0.023179	1	7867	7867		122.94	60.832	1	488180			13939	5684	9084	9117	14149	14149					-0.0021819990803351175
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2577819824219	2	461.257328	920.500103	0.097404	4.4928E-05	-0.0091696	-4.2295E-06	0.088234	4.0699E-05	461.2573403204015	26.946	0.13731	26.946	26.85	26.987	0					7	4	2	0	0	0	0.14578	1	8242	8242		68.846	10.616	1	117860			13940	922	9085	9118	14150	14150					0.03667309305535582
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2569274902344	2	461.257328	920.500103	0.77876	0.00035921	-1.8964	-0.00087471	-1.1176	-0.0005155	461.25663278901243	27.212	0.17743	27.212	27.127	27.305	0					11	4	3	0	0	0	0.047855	1	9472	9472		96.034	8.2793	1	842350			13941	922	9085	9118	14151	14151					0.03667309305535582
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2566223144531	2	461.257328	920.500103	-0.84807	-0.00039118	-0.08762	-4.0415E-05	-0.93569	-0.00043159	461.25729547516744	26.936	0.21488	26.936	26.839	27.054	0					11	7	2	0	0	0	0.13726	1	8522	8522		70.816	19.624	1	184850			13942	922	9085	9118	14152	14152					0.03667309305535582
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2568664550781	2	461.257328	920.500103	0.72254	0.00033328	-2.0086	-0.00092646	-1.286	-0.00059318	461.25655177361176	27.212	0.41382	27.212	27.008	27.422	0					20	8	4	0	0	0	0.015496	1	9822	9822		129.42	12.518	1	1131400			13943	922	9085	9118	14153	14153					0.03667309305535582
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2567443847656	2	461.257328	920.500103	-0.14184	-6.5425E-05	-0.63065	-0.00029089	-0.77249	-0.00035632	461.25700055676225	26.988	0.16077	26.988	26.903	27.064	0					8	4	2	0	0	0	0.095583	1	8776	8776		80.455	16.247	1	142710			13944	922	9085	9118	14154	14154					0.03667309305535582
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2567443847656	2	461.257328	920.500103	-2.5141	-0.0011597	1.7608	0.00081217	-0.75335	-0.00034749	461.2580667507744	26.998	0.15982	26.998	26.892	27.052	0					7	4	2	0	0	0	0.04067	1	8768	8768		98.582	47.247	1	115750			13945	922	9085	9118	14155	14155					0.03667309305535582
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2571105957031	2	461.257328	920.500103	-0.46057	-0.00021244	-0.86131	-0.00039729	-1.3219	-0.00060973	461.2571302165406	27.163	0.27027	27.163	27.053	27.323	0					10	5	3	0	0	0	0.022525	1	9679	9679		117.81	13.065	1	302390			13946	922	9085	9118	14156	14156					0.03667309305535582
GSMTVVTVK	9	Unmodified	_GSMTVVTVK_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.25701904296875	2	461.257328	920.500103	0.83427	0.00038481	-2.1908	-0.0010105	-1.3565	-0.0006257	461.2565887688166	27.145	0.47379	27.145	26.985	27.459	0					18	9	4	0	0	0	0.032383	1	9693	9693		106.68	1.9365	1	1065200			13947	922	9085	9118	14157	14157					0.03667309305535582
GSNAFISQK	9	Unmodified	_GSNAFISQK_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2481994628906	2	476.248349	950.482145	-0.16446	-7.8323E-05	-0.085837	-4.088E-05	-0.2503	-0.0001192	476.2481736801251	22.922	0.1644	22.922	22.839	23.004	0					8	5	2	0	0	0	0.22823	1	6560	6560		58.246	10.331	1	67429			13948	3591	9086	9119	14158	14158					0.004923103750456903
GSNAFISQK	9	Unmodified	_GSNAFISQK_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2481384277344	2	476.248349	950.482145	-0.38543	-0.00018356	0.16517	7.8663E-05	-0.22026	-0.0001049	476.248521450813	23.259	0.23988	23.259	23.161	23.401	0					10	5	3	0	0	0	0.082776	1	7684	7684		83.647	16.153	1	643330			13949	3591	9086	9119	14159	14159					0.004923103750456903
GSNGTIIRK	9	Unmodified	_GSNGTIIRK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.27734375	2	473.277441	944.540328	-0.31431	-0.00014875	-0.32824	-0.00015535	-0.64255	-0.0003041	473.2772420183061	16.037	0.13144	16.037	15.971	16.102	0					12	5	3	0	0	0	0.13726	1	3577	3577		70.816	12.034	1	505550			13950	3057;11390	9087	9120	14160	14160					0.06583992020318874
GSNGTIIRK	9	Unmodified	_GSNGTIIRK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2773742675781	2	473.277441	944.540328	-0.53272	-0.00025212	0.29028	0.00013738	-0.24244	-0.00011474	473.27764025783694	16.358	0.27036	16.358	16.264	16.534	0					15	6	4	0	0	0	0.026538	1	4422	4422		112.41	16.596	1	3779400			13951	3057;11390	9087	9120	14161	14161					0.06583992020318874
GSNGTIIRK	9	Unmodified	_GSNGTIIRK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.27752685546875	2	473.277441	944.540328	-0.67386	-0.00031892	0.44308	0.0002097	-0.23078	-0.00010923	473.27772265647394	16.066	0.098329	16.066	15.997	16.096	0					6	3	2	0	0	0	0.12834	1	3777	3777		72.879	14.097	1	392280			13952	3057;11390	9087	9120	14162	14162					0.06583992020318874
GSNGTIIRK	9	Unmodified	_GSNGTIIRK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.27716064453125	2	473.277441	944.540328	-0.65135	-0.00030827	0.23099	0.00010932	-0.42036	-0.00019895	473.27752864842023	16.305	0.1664	16.305	16.247	16.413	0					7	3	3	0	0	0	0.022525	1	4642	4642		117.81	32.65	1	1160600			13953	3057;11390	9087	9120	14163	14163					0.06583992020318874
GSNGTIIRK	9	Unmodified	_GSNGTIIRK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2771301269531	2	473.277441	944.540328	-2.5203	-0.0011928	2.7424	0.0012979	0.22206	0.0001051	473.2788153990104	16.096	0.13971	16.096	16.014	16.154	0					10	4	3	0	0	0	0.24334	1	3737	3737		56.434	3.4971	1	372060			13954	3057;11390	9087	9120	14164	14164					0.06583992020318874
GSNGYILNK	9	Unmodified	_GSNGYILNK_					0	0	0		nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1;ENSG00000181090|ENST00000460843|EHMT1	nc|ENSG00000181090|Q9H9B1-4|EHMT1	nc|ENSG00000181090|Q9H9B1-4|EHMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.25634765625	2	483.256174	964.497795	-1.2775	-0.00061738	0.87162	0.00042121	-0.40592	-0.00019616	483.25659661702565	25.192	0.59884	25.192	25.03	25.629	0					58	20	4	0	0	0	0.13267	1	7931	7931		71.877	20.542	1	8755900			13955	6838	9088	9121	14165	14165					0.01412596892100737
GSNPEVQKK	9	Unmodified	_GSNPEVQKK_					0	0	0		ENST00000502665.1_1_4:187126176-187131792:+|nuORF;CYP4V2|p.K471Sfs*4|1|0.3|ENSG00000145476|chr4:186210472-186210472|A/-|frameshift_variant;nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2	ENST00000502665.1_1_4:187126176-187131792:+|nuORF	ENST00000502665.1_1_4:187126176-187131792:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7664794921875	2	493.766906	985.519259	-0.47677	-0.00023542	1.5153	0.0007482	1.0385	0.00051279	493.76782967464294	12.295	0.11896	12.295	12.265	12.384	0					9	4	3	0	0	0	0.095583	1	2560	2560		80.455	18.347	1	159380			13956	732	9089	9122	14166	14166					0.025919819208070294
GSNPEVQKK	9	Unmodified	_GSNPEVQKK_					0	0	0		ENST00000502665.1_1_4:187126176-187131792:+|nuORF;CYP4V2|p.K471Sfs*4|1|0.3|ENSG00000145476|chr4:186210472-186210472|A/-|frameshift_variant;nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2	ENST00000502665.1_1_4:187126176-187131792:+|nuORF	ENST00000502665.1_1_4:187126176-187131792:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7665100097656	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.364	1	12.364	11.864	12.864	0								0	0	0	0.0029008	1	2763	2763		117.53	28.883	1				13957	732	9089	9122	14167	14167					0.025919819208070294
GSNPKAHIAAK	11	Unmodified	_GSNPKAHIAAK_					0	0	0		GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.310791015625	2	547.309272	1092.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.16	1	14.16	13.66	14.66	0								0	0	0	0.036183	1	3612	3612		99.013	49.571	1				13958	2499	9090	9123	14168	14168					0.061393524573986724
GSNPKAHIAAK	11	Unmodified	_GSNPKAHIAAK_					0	0	0		GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.3097534179688	2	547.309272	1092.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.185	1	14.185	13.685	14.685	0								0	0	0	0.36092	1	3471	3471		43.651	4.398	1				13959	2499	9090	9123	14169	14169					0.061393524573986724
GSPKVPRAR	9	Unmodified	_GSPKVPRAR_					0	0	0		nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7629089355469	2	484.293425	966.572297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.919	1	36.919	36.419	37.419	0								0	0	0	0.3693	1	14390	14390		19.997	2.6318	1				13960	6413	9091	9124	14170	14170					0.08767404494130915
GSQAGGSQTLK	11	Unmodified	_GSQAGGSQTLK_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENST00000481072.1_1_X:118763279-118767388:-|nuORF;ENST00000467310.1_1_X:118753883-118767379:-|nuORF	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2677001953125	2	517.26727	1032.51999	0.36297	0.00018775	-0.023905	-1.2365E-05	0.33906	0.00017538	517.2673783667897	15.345	0.20016	15.345	15.267	15.468	0					15	8	3	0	0	0	7.5003E-05	1	3323	3323		147.3	45.703	1	214740			13961	3411	9092	9125	14171	14171					0.005027765698514486
GSQAGGSQTLK	11	Unmodified	_GSQAGGSQTLK_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENST00000481072.1_1_X:118763279-118767388:-|nuORF;ENST00000467310.1_1_X:118753883-118767379:-|nuORF	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2669067382812	2	517.26727	1032.51999	0.044448	2.2991E-05	0.29998	0.00015517	0.34443	0.00017816	517.2673813356093	15.655	0.25357	15.655	15.56	15.813	0					16	6	4	0	0	0	5.6407E-05	2	4078	4078;4115		158.47	45.059	1	4571900			13962	3411	9092	9125	14172;14173	14172					0.005027765698514486
GSQAGGSQTLK	11	Unmodified	_GSQAGGSQTLK_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENST00000481072.1_1_X:118763279-118767388:-|nuORF;ENST00000467310.1_1_X:118753883-118767379:-|nuORF	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.26806640625	2	517.26727	1032.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.416	1	15.416	14.916	15.916	0								0	0	0	0.40723	1	3509	3509		35.496	3.9658	1				13963	3411	9092	9125	14174	14174					0.005027765698514486
GSQAGGSQTLK	11	Unmodified	_GSQAGGSQTLK_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENST00000481072.1_1_X:118763279-118767388:-|nuORF;ENST00000467310.1_1_X:118753883-118767379:-|nuORF	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.267333984375	2	517.26727	1032.51999	1.5165	0.00078442	-1.2026	-0.00062207	0.31387	0.00016235	517.2666076072546	15.626	0.2192	15.626	15.517	15.736	0					8	4	3	0	0	0	0.065278	1	4323	4323		98.182	23.139	1	793080			13964	3411	9092	9125	14175	14175					0.005027765698514486
GSQAGGSQTLK	11	Unmodified	_GSQAGGSQTLK_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENST00000481072.1_1_X:118763279-118767388:-|nuORF;ENST00000467310.1_1_X:118753883-118767379:-|nuORF	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2676391601562	2	517.26727	1032.51999	-1.4633	-0.00075693	1.8012	0.00093169	0.33786	0.00017476	517.2682854261227	15.404	0.1772	15.404	15.33	15.507	0					11	5	3	0	0	0	0.038896	1	3440	3440		110.54	25.38	1	270540			13965	3411	9092	9125	14176	14176					0.005027765698514486
GSQFFITTK	9	Unmodified	_GSQFFITTK_					0	0	0		nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000138398|ENST00000260970|PPIG;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR	nc|ENSG00000138398|Q13427-2|PPIG	nc|ENSG00000138398|Q13427-2|PPIG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7748413085938	2	514.7742	1027.53385	1.2804	0.00065914	-0.16545	-8.5169E-05	1.115	0.00057397	514.7740210467085	35.45	0.11637	35.45	35.387	35.503	0					11	6	2	0	0	0	0.40353	1	11614	11614		41.427	9.8968	1	79939			13966	2870	9093	9126	14177	14177					0.02118054068910169
GSQFFITTK	9	Unmodified	_GSQFFITTK_					0	0	0		nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000138398|ENST00000260970|PPIG;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR	nc|ENSG00000138398|Q13427-2|PPIG	nc|ENSG00000138398|Q13427-2|PPIG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7722778320312	2	514.7742	1027.53385	0.12065	6.2105E-05	-3.616	-0.0018614	-3.4954	-0.0017993	514.7721866839555	35.444	0.11915	35.444	35.398	35.517	0					10	6	2	0	0	0	0.099758	1	11617	11617		79.489	18.517	1	56556			13967	2870	9093	9126	14178	14178					0.02118054068910169
GSQFFITTK	9	Unmodified	_GSQFFITTK_					0	0	0		nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000138398|ENST00000260970|PPIG;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR	nc|ENSG00000138398|Q13427-2|PPIG	nc|ENSG00000138398|Q13427-2|PPIG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.774658203125	2	514.7742	1027.53385	1.1766	0.00060566	-0.44944	-0.00023136	0.72712	0.00037431	514.7739526023909	35.743	0.27401	35.743	35.64	35.914	0					18	7	4	0	0	0	0.01942	1	13410	13410		122.94	66.505	1	342380			13968	2870	9093	9126	14179	14179					0.02118054068910169
GSQFFITTK	9	Unmodified	_GSQFFITTK_					0	0	0		nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000138398|ENST00000260970|PPIG;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR	nc|ENSG00000138398|Q13427-2|PPIG	nc|ENSG00000138398|Q13427-2|PPIG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.7739868164062	2	514.7742	1027.53385	-0.15125	-7.7862E-05	0.33347	0.00017166	0.18221	9.3799E-05	514.7743029274907	35.503	0.28251	35.503	35.418	35.7	0					28	14	3	0	0	0	0.021015	1	12008	12008		120.31	42.988	1	392450			13969	2870	9093	9126	14180	14180					0.02118054068910169
GSQFFITTK	9	Unmodified	_GSQFFITTK_					0	0	0		nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000138398|ENST00000260970|PPIG;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR	nc|ENSG00000138398|Q13427-2|PPIG	nc|ENSG00000138398|Q13427-2|PPIG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7739868164062	2	514.7742	1027.53385	0.65614	0.00033776	-0.64003	-0.00032947	0.016108	8.2918E-06	514.7739107831319	35.526	0.25831	35.526	35.417	35.675	0					15	10	2	0	0	0	0.079477	1	12647	12647		84.817	35.281	1	195890			13970	2870	9093	9126	14181	14181					0.02118054068910169
GSQFFITTK	9	Unmodified	_GSQFFITTK_					0	0	0		nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000138398|ENST00000260970|PPIG;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR	nc|ENSG00000138398|Q13427-2|PPIG	nc|ENSG00000138398|Q13427-2|PPIG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.774658203125	2	514.7742	1027.53385	1.488	0.00076599	-1.0007	-0.00051515	0.48727	0.00025083	514.7736173835118	35.679	0.41369	35.679	35.518	35.931	0					24	8	4	0	0	0	0.0028263	1	13779	13779		169.65	52.749	1	1467300			13971	2870	9093	9126	14182	14182					0.02118054068910169
GSRGRKNSRT	10	Unmodified	_GSRGRKNSRT_					0	0	0		nc|ENSG00000087157|Q32NB8-3|PGS1;nc|ENSG00000087157|Q32NB8-2|PGS1;PGS1|p.V424Wfs*60|1|0.42|ENSG00000087157|chr17:78403953-78403953|G/-|frameshift_variant;ENSG00000087157|ENST00000262764|PGS1	nc|ENSG00000087157|Q32NB8-3|PGS1	nc|ENSG00000087157|Q32NB8-3|PGS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.544189453125	3	373.54276	1117.60645	3.2239	0.0012043	0.1467	5.4797E-05	3.3706	0.0012591	373.54279652930876	38.822	1.596	38.822	38.661	40.257	0					64	35	2	0	0	0	0.58189	1	15671	15671		27.644	0	1	164000			13972	1761	9094	9127	14183	14183					0.052352009150808954
GSRLLQPQPT	10	Unmodified	_GSRLLQPQPT_					0	0	0		ENST00000219476.7_1_16:2138283-2138505:+|nuORF	ENST00000219476.7_1_16:2138283-2138505:+|nuORF	ENST00000219476.7_1_16:2138283-2138505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.209228515625	3	366.208495	1095.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.954	1	29.954	29.454	30.454	0								0	0	0	0.4201	1	11147	11147		12.957	1.0251	1				13973	8172	9095	9128	14184	14184					0.059679327375761204
GSRLPAIPRLK	11	Unmodified	_GSRLPAIPRLK_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	403.2586975097656	3	403.259302	1206.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.353	1	34.353	33.853	34.853	0								0	0	0	0.45674	1	11582	11582		14.086	0.57807	1				13974	11493	9096	9129	14185	14185					0.16096753204965353
GSRPGRRNPE	10	Unmodified	_GSRPGRRNPE_					0	0	0		ENST00000354230.7_1_7:99698191-99698365:-|nuORF	ENST00000354230.7_1_7:99698191-99698365:-|nuORF	ENST00000354230.7_1_7:99698191-99698365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	375.8681640625	3	375.867244	1124.5799	0.80057	0.00030091	1.6798	0.00063138	2.4804	0.00093228	375.86786264974774	14.542	0.21004	14.542	14.456	14.666	0					8	5	2	0	0	0	0.66185	1	3575	3575		25.126	0	1	774900			13975	8781	9097	9130	14186	14186					0.022595120237383526
GSRPRKRI	8	Unmodified	_GSRPRKRI_					0	0	0			REV__ENST00000550853.1_2_9:136891668-136894151:+|nuORF	REV__ENST00000550853.1_2_9:136891668-136894151:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	323.8746337890625	3	323.87367	968.599181	2.9942	0.00096973	0.021491	6.9603E-06	3.0157	0.00097669	323.8736949680574	13.136	0.47666	13.136	13.035	13.511	0					18	10	2	0	0	0	0.61938	1	2983	2983		39.253	5.0803	1	7861300	+		13976	20197	9098	9131	14187	14187					0.11362513105314065
GSSAINILK	9	Unmodified	_GSSAINILK_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.768798828125	2	451.768917	901.523281	-0.32172	-0.00014534	-0.39458	-0.00017826	-0.7163	-0.0003236	451.7688868375545	32.199	0.23123	32.199	32.114	32.345	0					17	10	2	0	0	0	0.087861	1	10390	10390		82.241	22.122	1	119910			13977	5996	9099	9132	14188	14188					0.06858071414512779
GSSAINILK	9	Unmodified	_GSSAINILK_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7687072753906	2	451.768917	901.523281	-0.50988	-0.00023035	0.33579	0.0001517	-0.17409	-7.8647E-05	451.7691983118098	32.5	0.33822	32.5	32.41	32.748	0					20	8	3	0	0	0	0.085655	1	11924	11924		82.75	16.321	1	908230			13978	5996	9099	9132	14189	14189					0.06858071414512779
GSSAINILK	9	Unmodified	_GSSAINILK_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7685241699219	2	451.768917	901.523281	-1.1926	-0.00053878	0.51583	0.00023303	-0.67677	-0.00030575	451.7691477615886	32.274	0.25603	32.274	32.161	32.417	0					31	11	4	0	0	0	0.1424	1	10740	10740		69.628	13.194	1	730920			13979	5996	9099	9132	14190	14190					0.06858071414512779
GSSAINILK	9	Unmodified	_GSSAINILK_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7684326171875	2	451.768917	901.523281	0.71345	0.00032232	0.37926	0.00017134	1.0927	0.00049365	451.7692897213129	32.453	0.7948	32.453	32.225	33.02	0					46	19	4	0	0	0	0.048471	1	12325	12325		95.815	21.56	1	3569200			13980	5996	9099	9132	14191	14191					0.06858071414512779
GSSAINILK	9	Unmodified	_GSSAINILK_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.76861572265625	2	451.768917	901.523281	-2.6126	-0.0011803	3.5632	0.0016097	0.95064	0.00042947	451.77093450912906	32.238	0.53523	32.238	32.16	32.695	0					23	16	3	0	0	0	0.15163	1	11193	11193		67.494	1.0644	1	404710			13981	5996	9099	9132	14192	14192					0.06858071414512779
GSSAINILK	9	Unmodified	_GSSAINILK_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.76885986328125	2	451.768917	901.523281	0.87662	0.00039603	0.36371	0.00016431	1.2403	0.00056035	451.7692485417756	32.464	0.46818	32.464	32.355	32.823	0					27	9	4	0	0	0	0.10915	1	12228	12228		77.318	20.597	1	2508300			13982	5996	9099	9132	14193	14193					0.06858071414512779
GSSAINILK	9	Unmodified	_GSSAINILK_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7685241699219	2	451.768917	901.523281	2.527	0.0011416	-1.2074	-0.00054549	1.3196	0.00059615	451.7685095679645	32.446	0.7597	32.446	32.287	33.046	0					39	15	4	0	0	0	0.04067	1	12222	12222		98.582	31.088	1	3037600			13983	5996	9099	9132	14194	14194					0.06858071414512779
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.25537109375	2	431.255643	860.496732	0.16412	7.0776E-05	-0.53397	-0.00023028	-0.36985	-0.0001595	431.2553863095323	26.626	0.24815	26.626	26.531	26.779	0					16	8	3	0	0	0	0.048471	1	8108	8108		95.815	31.608	1	361440			13984	1540	9100	9133	14195	14195					0.06090382523188964
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.255615234375	2	431.255643	860.496732	0.76717	0.00033085	-1.0832	-0.00046716	-0.31608	-0.00013631	431.255139401223	26.931	0.7566	26.931	26.715	27.472	0					30	18	4	0	0	0	0.016683	1	9339	9339		127.46	55.584	1	3117400			13985	1540	9100	9133	14196	14196					0.06090382523188964
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2554016113281	2	431.255643	860.496732	-0.50795	-0.00021906	-0.046009	-1.9842E-05	-0.55396	-0.0002389	431.2555968356008	26.922	0.25097	26.922	26.835	27.086	0					9	6	2	0	0	0	0.078509	1	9354	9354		85.161	26.379	1	432640			13986	1540	9100	9133	14197	14197					0.06090382523188964
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.2552795410156	2	431.255643	860.496732	-0.82985	-0.00035788	0.28541	0.00012308	-0.54445	-0.0002348	431.2557531826394	26.632	0.25325	26.632	26.546	26.8	0					22	9	3	0	0	0	0.035062	1	8390	8390		104.06	47.336	1	772610			13987	1540	9100	9133	14198	14198					0.06090382523188964
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.2557067871094	2	431.255643	860.496732	0.19726	8.507E-05	-1.0169	-0.00043853	-0.8196	-0.00035346	431.2552328856777	26.712	0.19663	26.712	26.608	26.804	0					6	4	2	0	0	0	0.35021	1	8651	8651		45.972	18.09	1	75726			13988	1540	9100	9133	14199	14199					0.06090382523188964
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.2554016113281	2	431.255643	860.496732	-0.37853	-0.00016324	-0.084174	-3.6301E-05	-0.4627	-0.00019954	431.25555389836956	26.695	0.2408	26.695	26.595	26.836	0					12	5	3	0	0	0	0.037924	1	8642	8642		101.25	33.759	1	708550			13989	1540	9100	9133	14200	14200					0.06090382523188964
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.25567626953125	2	431.255643	860.496732	-0.46592	-0.00020093	0.40039	0.00017267	-0.065531	-2.8261E-05	431.255806962142	26.86	0.2631	26.86	26.756	27.019	0					13	5	3	0	0	0	0.12834	1	9534	9534		72.879	5.3856	1	974530			13990	1540	9100	9133	14201	14201					0.06090382523188964
GSSDVIIHR	9	Unmodified	_GSSDVIIHR_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.26690673828125	2	492.267073	982.519593	-0.073357	-3.6111E-05	-0.61277	-0.00030165	-0.68612	-0.00033776	492.26674634673924	20.987	0.44887	20.987	20.868	21.317	0					32	12	4	0	0	0	0.016683	1	5693	5693		127.46	34.266	1	5214000			13991	1442;10452	9101	9134	14202	14202					0.02763401640675056
GSSDVIIHR	9	Unmodified	_GSSDVIIHR_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2666931152344	2	492.267073	982.519593	-0.54691	-0.00026922	0.97997	0.0004824	0.43306	0.00021318	492.2677975234522	21.306	0.95596	21.306	21.163	22.119	0					54	22	7	0	0	0	0.010494	1	6738	6738		139.97	35.224	1	24713000			13992	1442;10452	9101	9134	14203	14203					0.02763401640675056
GSSDVIIHR	9	Unmodified	_GSSDVIIHR_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.266845703125	2	492.267073	982.519593	-1.2639	-0.00062219	0.67969	0.00033459	-0.58424	-0.0002876	492.2674297357468	21.006	0.46617	21.006	20.927	21.393	0					31	14	3	0	0	0	0.010494	1	5949	5949		139.97	49.601	1	6109800			13993	1442;10452	9101	9134	14204	14204					0.02763401640675056
GSSDVIIHR	9	Unmodified	_GSSDVIIHR_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;ENST00000532550.1_1_11:601671-606691:+|nuORF	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.26690673828125	2	492.267073	982.519593	0.58635	0.00028864	-1.032	-0.000508	-0.44562	-0.00021937	492.26671437548254	21.216	0.71309	21.216	21.112	21.825	0					36	14	4	0	0	0	0.020674	1	6988	6988		120.87	35.953	1	36672000			13994	1442;10452	9101	9134	14205	14205					0.02763401640675056
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2501525878906	2	459.250557	916.486562	0.80485	0.00036963	-2.0055	-0.00092101	-1.2006	-0.00055139	459.24970238948157	22.438	0.54354	22.438	22.031	22.575	0					20	12	3	0	0	0	0.11898	1	7276	7276		75.043	23.708	1	1747200			13995	1384	9102	9135	14206	14206					0.024977747979505693
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.25030517578125	2	459.250557	916.486562	-0.15621	-7.1739E-05	-0.43797	-0.00020114	-0.59418	-0.00027288	459.2502808051441	22.326	0.80397	22.326	21.924	22.728	0					33	16	3	0	0	0	0.056004	1	7527	7527		93.143	36.422	1	921180			13996	1384	9102	9135	14207	14207					0.024977747979505693
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2499084472656	2	459.250557	916.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.155	1	22.155	21.655	22.655	0								0	0	0	0.25587	1	6551	6551		42.864	8.6917	1				13997	1384	9102	9135	14208	14208					0.024977747979505693
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2498474121094	2	459.250557	916.486562	0.031557	1.4492E-05	-0.55305	-0.00025399	-0.52149	-0.00023949	459.25003718048134	22.162	0.18495	22.162	22.074	22.259	0					8	4	3	0	0	0	0.19605	1	6564	6564		62.107	10.772	1	200410			13998	1384	9102	9135	14209	14209					0.024977747979505693
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.25018310546875	2	459.250557	916.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.314	1	22.314	21.814	22.814	0								0	0	0	0.03526	1	7403	7403		93.143	29.837	1				13999	1384	9102	9135	14210	14210					0.024977747979505693
GSSGFKPTL	9	Unmodified	_GSSGFKPTL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.239990234375	2	447.239993	892.465432	-0.12925	-5.7806E-05	-0.62196	-0.00027816	-0.75121	-0.00033597	447.23978613032386	25.748	0.16438	25.748	25.653	25.817	0					4	2	2	0	0	0	0.4966	1	9174	9174		32.812	6.0163	1	140450			14000	3494	9103	9136	14211	14211					0.01489809489100935
GSSGSFYLK	9	Unmodified	_GSSGSFYLK_					0	0	0		nc|ENSG00000129422|Q9ULD2-6|MTUS1;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000518975.1_1_8:17566427-17579410:-|nuORF	nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-6|MTUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.23773193359375	2	473.23745	944.460347	-0.3186	-0.00015077	-0.5864	-0.00027751	-0.905	-0.00042828	473.2373200129415	29.663	0.19791	29.663	29.542	29.74	0					12	7	2	0	0	0	0.55379	1	9370	9370		26.693	3.6504	1	130970			14001	3597	9104	9137	14212	14212					-0.014104943735105735
GSSGSFYLK	9	Unmodified	_GSSGSFYLK_					0	0	0		nc|ENSG00000129422|Q9ULD2-6|MTUS1;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000518975.1_1_8:17566427-17579410:-|nuORF	nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-6|MTUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2372131347656	2	473.23745	944.460347	-0.53443	-0.00025291	0.33617	0.00015909	-0.19826	-9.3824E-05	473.23765309459986	29.931	0.32754	29.931	29.839	30.167	0					21	8	4	0	0	0	0.30841	1	10729	10729		49.536	1.6204	1	753260			14002	3597	9104	9137	14213	14213					-0.014104943735105735
GSSGSFYLK	9	Unmodified	_GSSGSFYLK_					0	0	0		nc|ENSG00000129422|Q9ULD2-6|MTUS1;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000518975.1_1_8:17566427-17579410:-|nuORF	nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-6|MTUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.23687744140625	2	473.23745	944.460347	-1.5324	-0.00072517	0.62658	0.00029652	-0.90579	-0.00042865	473.23771234801353	29.677	0.19327	29.677	29.619	29.812	0					12	7	2	0	0	0	0.36892	1	9686	9686		44.377	3.599	1	130520			14003	3597	9104	9137	14214	14214					-0.014104943735105735
GSSGSFYLK	9	Unmodified	_GSSGSFYLK_					0	0	0		nc|ENSG00000129422|Q9ULD2-6|MTUS1;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000518975.1_1_8:17566427-17579410:-|nuORF	nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-6|MTUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2373046875	2	473.23745	944.460347	0.59718	0.00028261	-0.64545	-0.00030545	-0.048266	-2.2841E-05	473.2371042146647	29.957	0.38324	29.957	29.851	30.235	0					18	8	3	0	0	0	0.035062	1	11140	11140		104.06	58.105	1	685250			14004	3597	9104	9137	14215	14215					-0.014104943735105735
GSSKIAIQK	9	Unmodified	_GSSKIAIQK_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2822265625	2	466.282192	930.549831	-0.18008	-8.3967E-05	-0.60778	-0.0002834	-0.78786	-0.00036736	466.2823105431467	17.455	0.17632	17.455	17.316	17.493	0					11	5	3	0	0	0	0.01873	1	4348	4348		124.08	19.334	1	316200			14005	11686	9105	9138	14216	14216					0.08177760305841275
GSSKIAIQK	9	Unmodified	_GSSKIAIQK_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.28204345703125	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.608	1	17.608	17.108	18.108	0								0	0	0	0.0026034	1	5112	5112		150.36	19.33	1				14006	11686	9105	9138	14217	14217					0.08177760305841275
GSSLLEAVKL	10	Unmodified	_GSSLLEAVKL_					0	0	0			REV__ENST00000544718.1_1_12:132403795-132404230:+|nuORF	REV__ENST00000544718.1_1_12:132403795-132404230:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.802734375	2	508.802957	1015.59136	-0.07436	-3.7834E-05	-0.64545	-0.00032841	-0.71981	-0.00036624	508.80271969834746	41.498	0.21352	41.498	41.371	41.584	0					9	5	2	0	0	0	0.46128	1	16501	16501		49.536	0.094497	1	141170	+		14007	16688	9106	9139	14218	14218					0.08418896274520193
GSSMIPVRLLR	11	Unmodified	_GSSMIPVRLLR_					0	0	0		ENSG00000176401|ENST00000326282|EID2B	ENSG00000176401|ENST00000326282|EID2B	ENSG00000176401|ENST00000326282|EID2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.9102783203125	3	410.244664	1227.71216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.606	1	20.606	20.106	21.106	0								0	0	0	0.45674	1	5544	5544		23.378	0	1				14008	6605	9107	9140	14219	14219					0.10741400716347016
GSSPTVLKK	9	Unmodified	_GSSPTVLKK_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7767639160156	2	458.776742	915.538931	-1.1295	-0.00051821	0.58603	0.00026886	-0.54351	-0.00024935	458.77732088729977	16.67	0.07909	16.67	16.62	16.699	0					5	3	2	0	0	0	0.41113	1	4049	4049		40.778	11.629	1	91205			14009	2414	9108	9141	14220	14220					0.07778357931567825
GSSPTVLKK	9	Unmodified	_GSSPTVLKK_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.77667236328125	2	458.776742	915.538931	-0.71883	-0.00032978	0.21467	9.8487E-05	-0.50416	-0.0002313	458.77696133538757	16.927	0.11196	16.927	16.835	16.947	0					6	2	3	0	0	0	0.11898	1	4930	4930		75.043	12.936	1	235410			14010	2414	9108	9141	14221	14221					0.07778357931567825
GSSPVAMQK	9	Unmodified	_GSSPVAMQK_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7312927246094	2	452.731477	903.448402	-0.52979	-0.00023985	-0.23179	-0.00010494	-0.76158	-0.00034479	452.7314962101703	19.805	0.46352	19.805	19.508	19.971	0					33	10	4	0	0	0	0.07136	1	6020	6020		87.696	34.345	1	2273800			14011	1166	9109	9142	14222	14222					-0.007184343883636757
GSSPVAMQK	9	Unmodified	_GSSPVAMQK_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.73193359375	2	452.731477	903.448402	-1.1947	-0.00054089	0.79869	0.00036159	-0.39603	-0.0001793	452.73177173420856	19.486	0.2778	19.486	19.382	19.66	0					13	8	2	0	0	0	0.36892	1	5281	5281		44.377	12.847	1	210620			14012	1166	9109	9142	14223	14223					-0.007184343883636757
GSSPVAMQK	9	Unmodified	_GSSPVAMQK_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7311706542969	2	452.731477	903.448402	0.72079	0.00032632	-1.6587	-0.00075095	-0.93793	-0.00042463	452.73077715806534	19.667	0.4641	19.667	19.412	19.877	0					21	9	3	0	0	0	0.21263	1	6266	6266		60.118	17.722	1	1343000			14013	1166	9109	9142	14224	14224					-0.007184343883636757
GSSPVAMQK	9	Unmodified	_GSSPVAMQK_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7312316894531	2	452.731477	903.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.678	1	19.678	19.178	20.178	0								0	0	0	0.091069	1	6261	6261		74.255	17.534	1				14014	1166	9109	9142	14225	14225					-0.007184343883636757
GSSRQSIQK	9	Unmodified	_GSSRQSIQK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7697448730469	2	495.76998	989.525407	0.73398	0.00036389	-1.1334	-0.0005619	-0.3994	-0.00019801	495.76947423486126	12.898	0.2907	12.898	12.837	13.127	0					17	8	4	0	0	0	0.082776	1	2810	2810		83.647	83.647	1	1380900			14015	7298	9110	9143	14226	14226					0.030225001523376704
GSSRQSIQK	9	Unmodified	_GSSRQSIQK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0;nc|ENSG00000189060|P07305-2|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7698059082031	2	495.76998	989.525407	-0.037937	-1.8808E-05	0.35916	0.00017806	0.32122	0.00015925	495.77020302362575	12.907	0.22637	12.907	12.815	13.041	0					9	5	2	0	0	0	0.14578	1	3028	3028		68.846	2.4169	1	467700			14016	7298	9110	9143	14227	14227					0.030225001523376704
GSSSASIVK	9	Unmodified	_GSSSASIVK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	418.229248046875	2	418.229625	834.444697	0.48588	0.00020321	-1.188	-0.00049685	-0.70212	-0.00029365	418.22913950119886	17.622	0.21721	17.622	17.524	17.741	0					11	6	3	0	0	0	0.11898	1	4235	4235		75.043	6.2565	1	201350			14017	1212	9111	9144	14228	14228					0.020852191094377304
GSSSASIVK	9	Unmodified	_GSSSASIVK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	418.2296142578125	2	418.229625	834.444697	-1.3594	-0.00056855	0.98019	0.00040995	-0.37923	-0.00015861	418.23009591346096	17.663	0.17644	17.663	17.564	17.741	0					11	5	3	0	0	0	0.36892	1	4460	4460		44.377	12.847	1	188350			14018	1212	9111	9144	14229	14229					0.020852191094377304
GSSSASIVK	9	Unmodified	_GSSSASIVK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	418.2293701171875	2	418.229625	834.444697	0.058269	2.437E-05	-0.66791	-0.00027934	-0.60964	-0.00025497	418.2292554756666	17.913	0.37074	17.913	17.651	18.022	0					12	7	3	0	0	0	0.085655	1	5415	5415		82.75	27.974	1	874320			14019	1212	9111	9144	14230	14230					0.020852191094377304
GSSSASIVK	9	Unmodified	_GSSSASIVK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.229736328125	2	418.229625	834.444697	0.1003	4.1946E-05	0.17292	7.2319E-05	0.27321	0.00011426	418.2295813887488	17.664	0.1147	17.664	17.609	17.723	0					4	2	2	0	0	0	0.42902	1	4463	4463		39.253	5.0803	1	122050			14020	1212	9111	9144	14231	14231					0.020852191094377304
GSSSASIVK	9	Unmodified	_GSSSASIVK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.2298278808594	2	418.229625	834.444697	-0.049921	-2.0878E-05	-0.12072	-5.049E-05	-0.17064	-7.1369E-05	418.22964395327136	17.698	0.15369	17.698	17.598	17.751	0					5	3	2	0	0	0	0.15163	1	4457	4457		67.494	18.052	1	201100			14021	1212	9111	9144	14232	14232					0.020852191094377304
GSSSASIVK	9	Unmodified	_GSSSASIVK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.2294616699219	2	418.229625	834.444697	-0.29155	-0.00012193	-0.29176	-0.00012202	-0.5833	-0.00024395	418.2294661827801	17.891	0.50993	17.891	17.632	18.142	0					16	10	3	0	0	0	0.3269	1	5257	5257		47.96	3.8427	1	1227200			14022	1212	9111	9144	14233	14233					0.020852191094377304
GSSSDTYLFKK	11	Unmodified	_GSSSDTYLFKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.5433654785156	3	411.543432	1231.60847	1.0128	0.00041679	-1.0628	-0.00043737	-0.050007	-2.058E-05	411.54294335101946	26.251	0.21465	26.251	26.164	26.379	0					12	5	3	0	0	0	0.78029	1	9042	9042		19.263	1.7947	1	508490			14023	7042	9112	9145	14234	14234					0.0019277208964467718
GSSSDTYLFKK	11	Unmodified	_GSSSDTYLFKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.8118896484375	2	616.81151	1231.60847	-0.47488	-0.00029291	1.1037	0.00068076	0.6288	0.00038785	616.8121278440835	26.243	0.21386	26.243	26.154	26.368	0					12	5	3	0	0	0	0.11546	1	9039	9039		86.882	40.909	1	356020			14024	7042	9112	9145	14235	14235					0.0019277208964467718
GSSSPLYSK	9	Unmodified	_GSSSPLYSK_					0	0	0		NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2	NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.234619140625	2	463.234907	924.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.098	1	21.098	20.598	21.598	0								0	0	0	0.22075	1	6812	6812		47.96	8.7067	1				14025	5933	9113	9146	14236	14236					-0.00998798236150833
GSSSSTFIK	9	Unmodified	_GSSSSTFIK_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2344055175781	2	457.234907	912.455261	-0.39523	-0.00018072	-0.64034	-0.00029279	-1.0356	-0.0004735	457.2346582470779	22.809	0.17305	22.809	22.745	22.918	0					9	5	2	0	0	0	0.15163	1	6512	6512		67.494	18.052	1	153440			14026	3946	9114	9147	14237	14237					-0.004467982361347822
GSSSSTFIK	9	Unmodified	_GSSSSTFIK_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2345886230469	2	457.234907	912.455261	-0.62334	-0.00028501	0.052104	2.3824E-05	-0.57124	-0.00026119	457.2349251740701	23.169	0.1839	23.169	23.08	23.263	0					12	4	4	0	0	0	0.25761	1	7641	7641		54.722	1.3709	1	975740			14027	3946	9114	9147	14238	14238					-0.004467982361347822
GSSSSTFIK	9	Unmodified	_GSSSSTFIK_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2344665527344	2	457.234907	912.455261	-1.0301	-0.00047102	0.76866	0.00035146	-0.26148	-0.00011956	457.2352192453707	22.879	0.18302	22.879	22.794	22.977	0					14	6	3	0	0	0	0.50858	1	6793	6793		31.53	1.0262	1	264340			14028	3946	9114	9147	14239	14239					-0.004467982361347822
GSSSSTFIK	9	Unmodified	_GSSSSTFIK_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.234619140625	2	457.234907	912.455261	0.72173	0.00033	-0.93866	-0.00042919	-0.21693	-9.919E-05	457.2344034035619	23.103	0.2178	23.103	22.995	23.212	0					9	4	3	0	0	0	0.19605	1	7928	7928		62.107	16.155	1	1440600			14029	3946	9114	9147	14240	14240					-0.004467982361347822
GSSSSTFIK	9	Unmodified	_GSSSSTFIK_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.23468017578125	2	457.234907	912.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.944	1	22.944	22.444	23.444	0								0	0	0	0.14881	1	6921	6921		60.118	10.677	1				14030	3946	9114	9147	14241	14241					-0.004467982361347822
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.2101135253906	2	419.210378	836.406203	0.46027	0.00019295	-0.61765	-0.00025893	-0.15738	-6.5974E-05	419.2101033573179	17.842	0.12231	17.842	17.768	17.89	0					7	3	3	0	0	0	0.1424	1	4330	4330		69.628	14.851	1	180990			14031	6467	9115	9148	14242	14242					-0.018544097967378548
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.210205078125	2	419.210378	836.406203	1.07	0.00044856	-1.8617	-0.00078046	-0.79171	-0.00033189	419.2097746751053	18.134	0.18379	18.134	18.037	18.221	0					12	4	4	0	0	0	0.0073253	1	5258	5258		148.04	18.36	1	1587200			14032	6467	9115	9148	14243	14243					-0.018544097967378548
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	419.2100830078125	2	419.210378	836.406203	-1.3261	-0.00055591	0.89668	0.0003759	-0.42941	-0.00018001	419.21071695924184	17.839	0.13194	17.839	17.792	17.924	0					5	3	2	0	0	0	0.33044	1	4558	4558		47.657	5.2612	1	258280			14033	6467	9115	9148	14244	14244					-0.018544097967378548
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2101745605469	2	419.210378	836.406203	0.0039019	1.6357E-06	-0.27606	-0.00011573	-0.27216	-0.00011409	419.21017539309685	18.114	0.21946	18.114	18.005	18.224	0					7	4	2	0	0	0	0.4966	1	5514	5514		32.812	3.6629	1	311930			14034	6467	9115	9148	14245	14245					-0.018544097967378548
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2101745605469	2	419.210378	836.406203	0.9042	0.00037905	-1.5479	-0.00064889	-0.64369	-0.00026984	419.2098632184942	18.097	0.27065	18.097	17.988	18.258	0					8	5	3	0	0	0	0.019882	1	5505	5505		122.18	28.981	1	1573800			14035	6467	9115	9148	14246	14246					-0.018544097967378548
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.2103576660156	2	419.210378	836.406203	0.10757	4.5094E-05	0.1986	8.3257E-05	0.30617	0.00012835	419.2105064186465	17.884	0.15265	17.884	17.834	17.986	0					5	3	2	0	0	0	0.36892	1	4565	4565		44.377	10.205	1	80980			14036	6467	9115	9148	14247	14247					-0.018544097967378548
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.21014404296875	2	419.210378	836.406203	-0.29695	-0.00012449	-0.44663	-0.00018723	-0.74358	-0.00031172	419.2103014118197	18.083	0.21184	18.083	17.978	18.19	0					8	4	3	0	0	0	0.028876	1	5353	5353		110.12	16.924	1	1081100			14037	6467	9115	9148	14248	14248					-0.018544097967378548
GSSSVAAMK	9	Unmodified	_GSSSVAAMK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.210205078125	2	419.210378	836.406203	1.0548	0.00044218	-1.9209	-0.00080528	-0.86616	-0.0003631	419.20980573780594	18.069	0.16499	18.069	18.01	18.175	0					10	3	4	0	0	0	0.012915	1	5347	5347		134.81	17.907	1	1217100			14038	6467	9115	9148	14249	14249					-0.018544097967378548
GSSSVAAMKK	10	Unmodified	_GSSSVAAMKK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;GNG5-NMI|1|fusion	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2574768066406	2	483.257859	964.501166	-0.59089	-0.00028555	-0.043988	-2.1258E-05	-0.63487	-0.00030681	483.25776457252795	15.408	0.1109	15.408	15.356	15.467	0					4	2	2	0	0	0	0.31613	1	4220	4220		65.465	15.929	1	383780			14039	6467	9116	9149	14250	14250					0.01749523674448028
GSSTIRNLK	9	Unmodified	_GSSTIRNLK_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.282470703125	2	488.282723	974.550893	-0.3842	-0.0001876	-1.5337	-0.00074887	-1.9179	-0.00093647	488.2818056628628	18.206	0.2252	18.206	18.114	18.339	0					12	5	3	0	0	0	0.12834	1	5274	5274		72.879	3.2516	1	2517700			14040	4551	9117	9150	14251	14251					0.06259974674742352
GSSTIRNLK	9	Unmodified	_GSSTIRNLK_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2822265625	2	488.282723	974.550893	-2.9093	-0.0014205	2.4099	0.0011767	-0.49941	-0.00024386	488.28379880420744	17.95	0.11067	17.95	17.891	18.002	0					4	2	2	0	0	0	0.25716	1	4596	4596		54.776	3.4409	1	243480			14041	4551	9117	9150	14252	14252					0.06259974674742352
GSSVTPLKK	9	Unmodified	_GSSVTPLKK_					0	0	0			REV__ENST00000375003.6_1_1:21083735-21091978:-|nuORF	REV__ENST00000375003.6_1_1:21083735-21091978:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.77655029296875	2	458.776742	915.538931	-0.41483	-0.00019031	-0.14353	-6.5849E-05	-0.55836	-0.00025616	458.776674267452	16.662	0.12079	16.662	16.599	16.719	0					7	4	2	0	0	0	0.24095	1	3825	3825		56.721	5.3856	1	297380	+		14042	18701	9118	9151	14253	14253					0.07778357931567825
GSSYPVCVSK	10	Unmodified	_GSSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7501220703125	2	513.749867	1025.48518	1.2517	0.00064305	-1.0926	-0.00056133	0.15907	8.1722E-05	513.7493972738719	26.196	0.36957	26.196	26.061	26.431	0					23	12	3	0	0	0	0.44292	1	7910	7910		51.528	17.355	1	389580			14043	1801	9119	9152	14254	14254					-0.026541825624462945
GSSYPVCVSK	10	Unmodified	_GSSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7499389648438	2	513.749867	1025.48518	-0.20478	-0.00010521	0.21333	0.0001096	0.0085438	4.3894E-06	513.7499733512263	26.177	0.55198	26.177	26	26.551	0					48	18	6	0	0	0	0.46128	1	8191	8191		49.536	10.73	1	569070			14044	1801	9119	9152	14255	14255					-0.026541825624462945
GSSYPVCVSK	10	Unmodified	_GSSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.7499389648438	2	513.749867	1025.48518	0.57457	0.00029519	-0.53865	-0.00027673	0.035923	1.8456E-05	513.7496169746374	26.254	0.58244	26.254	26.121	26.704	0					28	13	3	0	0	0	0.28675	1	8418	8418		68.846	25.982	1	556020			14045	1801	9119	9152	14256	14256					-0.026541825624462945
GSSYPVCVSK	10	Unmodified	_GSSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7499389648438	2	513.749867	1025.48518	0.10484	5.3863E-05	-0.38076	-0.00019562	-0.27592	-0.00014175	513.7498466147465	26.409	0.66922	26.409	26.25	26.919	0					26	13	4	0	0	0	0.25899	1	9313	9313		72.243	28.126	1	1355200			14046	1801	9119	9152	14257	14257					-0.026541825624462945
GSSYPVCVSK	10	Carbamidomethyl (C)	_GSSYPVC(Carbamidomethyl (C))VSK_	GSSYPVC(1)VSK		GSSYPVC(78)VSK		0	1	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.2609252929688	2	542.260599	1082.50665	0.21711	0.00011773	0.52742	0.000286	0.74453	0.00040373	542.2610245160108	25.345	0.51121	25.345	25.223	25.734	0					45	17	4	0	0	0	0.20981	1	7838	7838		78.264	28.728	1	3131100			14047	1801	9119	9153	14258	14258	75				-0.03130797533754048
GSSYPVCVSK	10	Carbamidomethyl (C)	_GSSYPVC(Carbamidomethyl (C))VSK_	GSSYPVC(1)VSK		GSSYPVC(130)VSK		0	1	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2608642578125	2	542.260599	1082.50665	2.0394	0.0011059	-1.4403	-0.000781	0.59914	0.00032489	542.2599234411095	25.544	0.88413	25.544	25.442	26.326	0					42	16	5	0	0	0	0.01215	1	9066	9066		134.77	57.991	1	19611000			14048	1801	9119	9153	14259	14259	75				-0.03130797533754048
GSSYPVCVSK	10	Carbamidomethyl (C)	_GSSYPVC(Carbamidomethyl (C))VSK_	GSSYPVC(1)VSK		GSSYPVC(130)VSK		0	1	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.260986328125	2	542.260599	1082.50665	1.0638	0.00057688	-0.53476	-0.00028998	0.52909	0.00028691	542.2604154397449	25.389	0.49828	25.389	25.252	25.75	0					27	12	4	0	0	0	0.018513	1	8056	8056		126.24	64.135	1	3579900			14049	1801	9119	9153	14260	14260	75				-0.03130797533754048
GSTFFIAMI	9	Unmodified	_GSTFFIAMI_					0	0	0			REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.5067443847656	3	329.505373	985.494289	3.0036	0.00098971	0.93009	0.00030647	3.9337	0.0012962	329.5056887967819	20.617	0.56505	20.617	20.511	21.076	0					19	11	3	0	0	0	0.30951	1	6588	6588		49.442	11.63	1	2274600	+		14050	12053	9120	9154	14261	14261					0.0009621079389035003
GSTGAGGLLL	10	Unmodified	_GSTGAGGLLL_					0	0	0			REV__ENSG00000261221|ENST00000568956|ZNF865	REV__ENSG00000261221|ENST00000568956|ZNF865	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.2394104003906	2	423.239993	844.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.638	1	22.638	22.138	23.138	0								0	0	0	0.2708	1	6777	6777		55.504	6.0627	1		+		14051	17778	9121	9155	14262	14262					0.03697809489096926
GSTIFRPRQ	9	Unmodified	_GSTIFRPRQ_					0	0	0			REV__ENST00000568029.5_1_15:42462052-42470793:-|nuORF	REV__ENST00000568029.5_1_15:42462052-42470793:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2941284179688	2	531.296165	1060.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.061	1	19.061	18.561	19.561	0								0	0	0	0.25587	1	5101	5101		27.882	0	1		+		14052	16148	9122	9156	14263	14263					0.04991083285949571
GSTIGTKKR	9	Unmodified	_GSTIGTKKR_					0	0	0			REV__ENST00000459941.1_1_3:9516535-9516574:+|nuORF	REV__ENST00000459941.1_1_3:9516535-9516574:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.28717041015625	2	474.285266	946.555979	2.3632	0.0011208	0.80637	0.00038245	3.1696	0.0015033	474.28566993898346	41.436	0.29543	41.436	41.3	41.595	0					12	7	2	0	0	0	0.28897	1	16472	16472		51.193	51.193	1	218200	+		14053	19360	9123	9157	14264	14264					0.08056278537367234
GSTLGLGLSLP	11	Unmodified	_GSTLGLGLSLP_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7946472167969	2	507.795132	1013.57571	-0.6129	-0.00031123	2.2673	0.0011513	1.6544	0.00084008	507.7963220647246	36.35	0.19461	36.35	36.26	36.454	0					13	10	2	0	0	0	0.65907	1	12305	12305		31.53	0	1	73057	+		14054	19776	9124	9158	14265	14265					0.06946609757483202
GSTVLSLLGAP	11	Unmodified	_GSTVLSLLGAP_					0	0	0			REV__SLC39A4|p.L32V|1|0.09|ENSG00000147804|chr8:144416696-144416696|G/C|missense_variant	REV__SLC39A4|p.L32V|1|0.09|ENSG00000147804|chr8:144416696-144416696|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7947998046875	2	507.795132	1013.57571	-0.029987	-1.5227E-05	-0.72448	-0.00036789	-0.75447	-0.00038312	507.7950509208225	36.591	0.18937	36.591	36.485	36.674	0					9	5	2	0	0	0	0.47622	1	13819	13819		45.972	3.6342	1	278100	+		14055	21533	9125	9159	14266	14266					0.06946609757483202
GSVAFDYRK	9	Unmodified	_GSVAFDYRK_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;ENST00000530775.1_1_11:66454463-66454959:-|nuORF	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.769775390625	2	521.769448	1041.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.551	1	24.551	24.051	25.051	0								0	0	0	0.14033	1	8280	8280		62.107	8.756	1				14056	6458	9126	9160	14267	14267					0.005242857833991366
GSVAGDFVKK	10	Unmodified	_GSVAGDFVKK_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2794494628906	2	504.279649	1006.54475	-0.45839	-0.00023116	0.17797	8.9745E-05	-0.28042	-0.00014141	504.2797189975019	23.036	0.26801	23.036	22.927	23.195	0					10	5	2	0	0	0	0.0010959	1	7892	7892		181.41	19.155	1	1788300			14057	5777	9127	9161	14268	14268					0.04173456443231771
GSVALEVPTK	10	Unmodified	_GSVALEVPTK_					0	0	0			REV__nc|ENSG00000139405|Q96K30-2|RITA1	REV__nc|ENSG00000139405|Q96K30-2|RITA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.78717041015625	2	500.787307	999.560061	0.39786	0.00019924	-0.16438	-8.2321E-05	0.23348	0.00011692	500.78747303581855	25.122	0.21466	25.122	25.023	25.238	0					11	6	2	0	0	0	0.64162	1	7542	7542		29.17	1.0886	1	93240	+		14058	15027	9128	9162	14269	14269					0.06026323240428155
GSVAVMGETEQ	11	Unmodified	_GSVAVMGETEQ_					0	0	0			REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2546997070312	2	554.252971	1106.49139	1.3129	0.0007277	1.3078	0.00072483	2.6207	0.0014525	554.2540671151982	15.378	0.075898	15.378	15.327	15.402	0					6	3	2	0	0	0	0.42746	1	3342	3342		49.536	0	1	67485	+		14059	13532	9129	9163	14270	14270					-0.057597091215939145
GSVCTEKLK	9	Unmodified	_GSVCTEKLK_					0	0	0			REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.1758117675781	3	322.175915	963.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.46	1	16.46	15.96	16.96	0								0	0	0	0.28996	1	4708	4708		29.17	1.0886	1		+		14060	12125	9130	9164	14271	14271					0.02270407817195519
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.7976989746094	2	499.797675	997.580796	0.32843	0.00016415	0.54064	0.00027021	0.86907	0.00043436	499.7980016911912	38.376	0.45748	38.376	38.148	38.606	0					41	26	2	0	0	0	0.28036	1	12499	12499		69.628	30.375	1	73296			14061	7935	9131	9165	14272	14272					0.08190913620092033
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7969970703125	2	499.797675	997.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.491	1	38.491	37.991	38.991	0								0	0	0	0.1345	1	12983	12983		72.879	37.261	1				14062	7935	9131	9165	14273	14273					0.08190913620092033
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7975158691406	2	499.797675	997.580796	-0.0023888	-1.1939E-06	-0.30355	-0.00015171	-0.30593	-0.00015291	499.7975482527955	38.667	0.62775	38.667	38.311	38.938	0					48	22	3	0	0	0	0.056886	2	15231	15084;15231		107.01	39.514	1	246600			14063	7935	9131	9165	14274;14275	14275					0.08190913620092033
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7989501953125	2	499.797675	997.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.359	1	38.359	37.859	38.859	0								0	0	0	0.3598	1	13723	13723		41.427	9.8968	1				14064	7935	9131	9165	14276	14276					0.08190913620092033
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7978210449219	2	499.797675	997.580796	0.16116	8.0545E-05	0.21118	0.00010555	0.37234	0.00018609	499.79783424471697	38.431	0.4334	38.431	38.196	38.629	0					32	21	2	0	0	0	0.59277	1	13735	13735		35.152	4.8343	1	47205			14065	7935	9131	9165	14277	14277					0.08190913620092033
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.79742431640625	2	499.797675	997.580796	-0.69261	-0.00034616	0.48361	0.0002417	-0.209	-0.00010446	499.79790430213126	38.55	0.96497	38.55	37.988	38.953	0					47	20	3	0	0	0	0.15878	2	15248	15070;15248		85.161	37.503	1	577500			14066	7935	9131	9165	14278;14279	14279					0.08190913620092033
GSVGAGHLHPF	11	Unmodified	_GSVGAGHLHPF_					0	0	0			REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF	REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.775634765625	2	539.775065	1077.53558	1.4538	0.00078471	-0.98067	-0.00052934	0.47311	0.00025537	539.7746613059921	28.15	0.25174	28.15	28.096	28.348	0					8	5	2	0	0	0	0.61618	1	10342	10342		35.618	0	1	53284	+		14067	19253	9132	9166	14280	14280					-8.892122446013673E-05
GSVLLFVTK	9	Unmodified	_GSVLLFVTK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.297119140625	2	482.29731	962.580068	0.073079	3.5246E-05	0.37794	0.00018228	0.45102	0.00021753	482.2972619924729	43.476	0.13344	43.476	43.393	43.527	0					11	8	2	0	0	0	0.24334	1	13714	13714		56.434	15.007	1	55427			14068	7543	9133	9167	14281	14281					0.09728118971042932
GSVLLFVTK	9	Unmodified	_GSVLLFVTK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.29730224609375	2	482.29731	962.580068	-0.10735	-5.1773E-05	-0.18208	-8.7816E-05	-0.28943	-0.00013959	482.2971617572595	43.752	0.25004	43.752	43.692	43.942	0					30	13	3	0	0	0	0.085655	1	16462	16462		82.75	38.373	1	276120			14069	7543	9133	9167	14282	14282					0.09728118971042932
GSVLLFVTK	9	Unmodified	_GSVLLFVTK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.29876708984375	2	482.29731	962.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.516	1	43.516	43.016	44.016	0								0	0	0	0.10319	1	14228	14228		70.816	31.563	1				14070	7543	9133	9167	14283	14283					0.09728118971042932
GSVLLFVTK	9	Unmodified	_GSVLLFVTK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.29766845703125	2	482.29731	962.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.524	1	43.524	43.024	44.024	0								0	0	0	0.077333	1	15073	15073		78.264	30.348	1				14071	7543	9133	9167	14284	14284					0.09728118971042932
GSVLVMLLQ	9	Oxidation (M)	_GSVLVM(Oxidation (M))LLQ_		GSVLVM(1)LLQ		GSVLVM(59)LLQ	0	0	1		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2825622558594	2	488.280803	974.547053	2.5883	0.0012638	0.95284	0.00046525	3.5411	0.0017291	488.28121501864905	18.15	0.26069	18.15	17.994	18.254	0					11	5	3	0	0	0	0.22377	1	5387	5387		58.782	58.782	1	2385800			14072	5263	9134	9168	14285	14285		214			0.058761688566846715
GSVSLRAIPP	10	Unmodified	_GSVSLRAIPP_					0	0	0			REV__ENST00000524437.5_1_11:62402291-62406896:-|nuORF	REV__ENST00000524437.5_1_11:62402291-62406896:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.86602783203125	3	332.86607	995.57638	0.5216	0.00017362	-0.81554	-0.00027147	-0.29394	-9.7844E-05	332.8657499900613	23.871	0.28265	23.871	23.678	23.961	0					12	6	3	0	0	0	0.58896	1	7971	7971		32.751	0	1	468850			14073	13412	9135	9169	14286	14286					0.07841449197167094
GSVSLWSLLL	10	Unmodified	_GSVSLWSLLL_					0	0	0		ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant	ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant	ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3169555664062	2	537.813325	1073.6121	1.8928	0.001018	-3.6045	-0.0019385	-1.7117	-0.00092057	537.8107680019	27.294	1.0045	27.294	26.661	27.665	0					30	15	3	0	0	0	0.536	1	9846	9846		15.642	0	1	2471000			14074	244	9136	9170	14287	14287					0.07823486654206135
GSVWWKIAK	9	Unmodified	_GSVWWKIAK_					0	0	0		USP24|p.R987W|1|0.2|ENSG00000162402|chr1:55137874-55137874|G/A|missense_variant	USP24|p.R987W|1|0.2|ENSG00000162402|chr1:55137874-55137874|G/A|missense_variant	USP24|p.R987W|1|0.2|ENSG00000162402|chr1:55137874-55137874|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.8747253417969	3	358.874677	1073.6022	-0.091871	-3.297E-05	-0.15475	-5.5537E-05	-0.24662	-8.8507E-05	358.87447001983924	25.047	0.14516	25.047	24.953	25.098	0					5	3	2	0	0	0	0.5741	1	7900	7900		24.519	0.99649	1	114820			14075	23097	9137	9171	14288	14288					0.0683434343945919
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.80712890625	2	504.808042	1007.60153	-0.067531	-3.409E-05	-0.32781	-0.00016548	-0.39534	-0.00019957	504.8076536135248	26.16	0.23902	26.16	26.054	26.293	0					20	8	4	0	0	0	0.021015	1	7898	7898		104.06	16.36	1	366500			14076	4377	9138	9172	14289	14289					0.0980350399973986
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.8743591308594	3	336.874454	1007.60153	0.66094	0.00022265	-0.85382	-0.00028763	-0.19288	-6.4977E-05	336.87414981915583	26.415	0.22087	26.415	26.326	26.547	0					13	5	3	0	0	0	0.21263	1	9123	9123		60.118	24.5	1	577140			14077	4377	9138	9172	14290	14290					0.0980350399973986
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.8080139160156	2	504.808042	1007.60153	-0.052159	-2.633E-05	0.17967	9.07E-05	0.12751	6.437E-05	504.8080948889776	26.404	0.44646	26.404	26.314	26.76	0					27	10	5	0	0	0	0.021015	1	9093	9093		104.06	21.816	1	2842900			14078	4377	9138	9172	14291	14291					0.0980350399973986
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.8077392578125	2	504.808042	1007.60153	-0.80042	-0.00040406	0.36113	0.0001823	-0.43929	-0.00022176	504.80795704129423	26.15	0.26689	26.15	26.057	26.323	0					20	8	4	0	0	0	0.017741	1	8180	8180		109.48	10.849	1	751120			14079	4377	9138	9172	14292	14292					0.0980350399973986
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.8744201660156	3	336.874454	1007.60153	-0.045306	-1.5263E-05	-0.16086	-5.4191E-05	-0.20617	-6.9454E-05	336.8744187552888	26.207	0.18093	26.207	26.121	26.302	0					7	4	2	0	0	0	0.51991	1	8420	8420		30.318	14.311	1	125260			14080	4377	9138	9172	14293	14293					0.0980350399973986
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.80804443359375	2	504.808042	1007.60153	-1.9974	-0.0010083	1.5872	0.00080125	-0.4102	-0.00020707	504.8086854340515	26.24	0.31665	26.24	26.109	26.426	0					16	7	4	0	0	0	0.010427	1	8406	8406		124.08	13.96	1	533600			14081	4377	9138	9172	14294	14294					0.0980350399973986
GSWASLVQK	9	Unmodified	_GSWASLVQK_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;BRD4|p.P1210L|1|0.19|ENSG00000141867|chr19:15239212-15239212|G/A|missense_variant	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.26611328125	2	488.266542	974.51853	-0.018629	-9.0958E-06	-0.49025	-0.00023937	-0.50888	-0.00024847	488.2663898213614	36.494	0.22277	36.494	36.399	36.622	0					21	11	3	0	0	0	0.035062	1	11961	11961		104.06	27.283	1	197960			14082	4473	9139	9173	14295	14295					0.030251872717599326
GSWASLVQK	9	Unmodified	_GSWASLVQK_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;BRD4|p.P1210L|1|0.19|ENSG00000141867|chr19:15239212-15239212|G/A|missense_variant	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2662658691406	2	488.266542	974.51853	-0.38053	-0.0001858	0.12778	6.2392E-05	-0.25274	-0.00012341	488.26658785733474	36.781	0.5537	36.781	36.625	37.179	0					22	15	2	0	0	0	0.016683	1	13886	13886		127.46	28.087	1	1283900			14083	4473	9139	9173	14296	14296					0.030251872717599326
GSWASLVQK	9	Unmodified	_GSWASLVQK_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;BRD4|p.P1210L|1|0.19|ENSG00000141867|chr19:15239212-15239212|G/A|missense_variant	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7672119140625	2	488.266542	974.51853	-1.2486	-0.00060967	1.607	0.00078466	0.3584	0.00017499	488.26729074079606	36.531	0.23375	36.531	36.449	36.683	0					21	12	3	0	0	0	0.36892	1	12370	12370		44.377	10.205	1	139970			14084	4473	9139	9173	14297	14297					0.030251872717599326
GSWASLVQK	9	Unmodified	_GSWASLVQK_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;BRD4|p.P1210L|1|0.19|ENSG00000141867|chr19:15239212-15239212|G/A|missense_variant	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2663879394531	2	488.266542	974.51853	0.62099	0.00030321	-0.26889	-0.00013129	0.35211	0.00017192	488.26655960298973	36.745	0.6251	36.745	36.502	37.127	0					26	19	2	0	0	0	0.056004	1	14322	14322		93.143	18.888	1	1146100			14085	4473	9139	9173	14298	14298					0.030251872717599326
GSWASLVQK	9	Unmodified	_GSWASLVQK_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;BRD4|p.P1210L|1|0.19|ENSG00000141867|chr19:15239212-15239212|G/A|missense_variant	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2665100097656	2	488.266542	974.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.728	1	36.728	36.228	37.228	0								0	0	0	0.015064	1	14299	14299		104.06	2.4561	1				14086	4473	9139	9173	14299	14299					0.030251872717599326
GSYDPQQIFK	10	Unmodified	_GSYDPQQIFK_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.294677734375	2	591.793121	1181.57169	0.12575	7.4418E-05	-0.040214	-2.3798E-05	0.085537	5.062E-05	591.7930745444093	38.054	0.22291	38.054	37.891	38.114	0					23	13	2	0	0	0	0.52275	1	12402	12402		42.864	12.361	1	75292			14087	3731	9140	9174	14300	14300					-0.011834797362553218
GSYDPQQIFK	10	Unmodified	_GSYDPQQIFK_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.7935180664062	2	591.793121	1181.57169	0.26135	0.00015467	-0.62047	-0.00036719	-0.35912	-0.00021252	591.7931142294998	38.334	0.38251	38.334	38.147	38.53	0					40	13	5	0	0	0	0.12383	1	14523	14523		91.265	40.073	1	598300			14088	3731	9140	9174	14301	14301					-0.011834797362553218
GSYDPQQIFK	10	Unmodified	_GSYDPQQIFK_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.7933349609375	2	591.793121	1181.57169	-0.52322	-0.00030964	1.3053	0.00077245	0.78204	0.00046281	591.7940519048049	38.111	0.24244	38.111	38.022	38.265	0					20	13	2	0	0	0	0.28675	1	12847	12847		68.846	14.07	1	77567			14089	3731	9140	9174	14302	14302					-0.011834797362553218
GSYESTLKK	9	Unmodified	_GSYESTLKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.76910400390625	2	506.769114	1011.52368	-0.083426	-4.2278E-05	0.049518	2.5094E-05	-0.033908	-1.7184E-05	506.7691857509315	18.332	0.096676	18.332	18.279	18.376	0					7	4	2	0	0	0	0.36892	1	4557	4557		44.377	15.228	1	70790			14090	7042	9141	9175	14303	14303					0.01837446343722604
GSYESTLKK	9	Unmodified	_GSYESTLKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.769287109375	2	506.769114	1011.52368	-0.037401	-1.8954E-05	0.38239	0.00019378	0.34499	0.00017483	506.76927983858354	18.637	0.17528	18.637	18.547	18.723	0					10	4	3	0	0	0	0.098791	1	5498	5498		79.713	37.316	1	687180			14091	7042	9141	9175	14304	14304					0.01837446343722604
GSYESTLKK	9	Unmodified	_GSYESTLKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.7693176269531	2	506.769114	1011.52368	-0.67462	-0.00034187	1.3745	0.00069657	0.69991	0.00035469	506.7697126005583	18.341	0.10806	18.341	18.283	18.391	0					10	4	3	0	0	0	0.098791	1	4774	4774		79.713	37.316	1	117890			14092	7042	9141	9175	14305	14305					0.01837446343722604
GSYESTLKK	9	Unmodified	_GSYESTLKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7690124511719	2	506.769114	1011.52368	1.0978	0.00055633	-1.1241	-0.00056968	-0.026333	-1.3345E-05	506.7684745071592	18.552	0.21774	18.552	18.493	18.711	0					8	4	3	0	0	0	0.032052	1	5725	5725		107.01	43.701	1	1053100			14093	7042	9141	9175	14306	14306					0.01837446343722604
GSYLAHTQGK	10	Unmodified	_GSYLAHTQGK_					0	0	0		ENST00000590034.2_1_19:2244656-2244779:+|nuORF;ENST00000592314.5_1_19:2243417-2246882:+|nuORF;ENST00000592839.6_1_19:2243417-2245742:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2	ENST00000590034.2_1_19:2244656-2244779:+|nuORF	ENST00000590034.2_1_19:2244656-2244779:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2520141601562	2	531.272355	1060.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.055	1	18.055	17.555	18.555	0								0	0	0	0.30539	1	5211	5211		50.034	17.221	1				14094	2319	9142	9176	14307	14307					0.0023138429510254355
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	376.21356201171875	3	376.213358	1125.61824	0.51046	0.00019204	-0.27724	-0.0001043	0.23323	8.7743E-05	376.21322306568135	26.946	0.28614	26.946	26.85	27.136	0					19	9	4	0	0	0	0.080628	1	8241	8241		99.013	51.785	1	468520			14095	1933	9143	9177	14308	14308					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.8177490234375	2	563.816399	1125.61824	1.4438	0.00081406	0.34662	0.00019543	1.7905	0.0010095	563.8166590860159	26.946	0.19689	26.946	26.879	27.076	0					11	6	3	0	0	0	0.048505	1	8244	8244		98.582	62.964	1	301460			14096	1933	9143	9177	14309	14309					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.2132873535156	3	376.213358	1125.61824	0.80311	0.00030214	-0.66533	-0.00025031	0.13778	5.1836E-05	376.21298056886576	27.171	1.0082	27.171	26.969	27.977	0					49	24	5	0	0	0	0.06456	1	9451	9451		104.42	59.401	1	3974100			14097	1933	9143	9177	14310	14310					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.8170776367188	2	563.816399	1125.61824	0.13377	7.5424E-05	0.43753	0.00024669	0.5713	0.00032211	563.8166057935728	26.962	0.3053	26.962	26.866	27.171	0					28	10	4	0	0	0	0.010919	1	8519	8519		141.52	79.413	1	709050			14098	1933	9143	9177	14311	14311					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	376.2132568359375	3	376.213358	1125.61824	-1.0829	-0.00040741	1.0729	0.00040364	-0.010037	-3.7759E-06	376.2136651109778	26.974	0.3053	26.974	26.866	27.171	0					23	10	4	0	0	0	0.14893	1	8532	8532		86.882	48.128	1	325490			14099	1933	9143	9177	14312	14312					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.816650390625	2	563.816399	1125.61824	1.8829	0.0010616	-0.97247	-0.00054829	0.91045	0.00051333	563.8157442493888	27.21	0.95585	27.21	27.008	27.964	0					49	19	6	0	0	0	0.0060268	1	9818	9818		154.12	92.011	1	4880000			14100	1933	9143	9177	14313	14313					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.2132568359375	3	376.213358	1125.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.185	1	27.185	26.685	27.685	0								0	0	0	0.012705	1	9820	9820		109.44	62.982	1				14101	1933	9143	9177	14314	14314					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.81689453125	2	563.816399	1125.61824	0.8825	0.00049757	0.42887	0.00024181	1.3114	0.00073937	563.8165970099661	27.002	0.32633	27.002	26.936	27.262	0					20	8	4	0	0	0	0.0015876	1	8774	8774		155.58	119.14	1	731530			14102	1933	9143	9177	14315	14315					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.21331787109375	3	376.213358	1125.61824	-0.1264	-4.7553E-05	0.29024	0.00010919	0.16384	6.1639E-05	376.21332525336277	27.018	0.27399	27.018	26.903	27.177	0					16	7	3	0	0	0	0.16075	1	8775	8775		84.817	39.795	1	504320			14103	1933	9143	9177	14316	14316					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.2131042480469	3	376.213358	1125.61824	-0.39158	-0.00014732	1.9855	0.00074697	1.5939	0.00059965	376.2133615937777	27.111	0.26896	27.111	26.952	27.221	0					8	5	2	0	0	0	0.5155	1	9681	9681		43.651	18.525	1	215180			14104	1933	9143	9177	14317	14317					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.2132873535156	3	376.213358	1125.61824	0.71394	0.0002686	-0.04037	-1.5188E-05	0.67357	0.00025341	376.21301946746394	27.145	1.6714	27.145	27.036	28.707	0					70	33	3	0	0	0	0.0093015	1	9667	9667		145.46	82.034	1	6474000			14105	1933	9143	9177	14318	14318					0.060460048857066795
GSYRGAGRR	9	Unmodified	_GSYRGAGRR_					0	0	0			REV__ENST00000488910.1_1_3:112277171-112280432:-|nuORF	REV__ENST00000488910.1_1_3:112277171-112280432:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.1783142089844	3	327.17753	978.51076	0.38954	0.00012745	2.1599	0.00070667	2.5494	0.00083412	327.17818677309594	16.638	0.21319	16.638	16.531	16.744	0					7	4	2	0	0	0	0.30841	1	4803	4803		49.536	5.4192	1	1590000	+		14106	19415	9144	9178	14319	14319					0.020644727948592845
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.75628662109375	2	493.756341	985.498129	-0.068629	-3.3886E-05	-0.29955	-0.00014791	-0.36818	-0.00018179	493.7561167679759	20.378	0.33392	20.378	20.302	20.636	0					24	10	4	0	0	0	0.0093724	1	5430	5430		126.24	73.943	1	911930			14107	955	9145	9179	14320	14320					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.75628662109375	2	493.756341	985.498129	-0.48101	-0.0002375	0.50941	0.00025152	0.028403	1.4024E-05	493.75656419040354	20.693	0.66944	20.693	20.594	21.264	0					26	15	2	0	0	0	0.0014418	1	6469	6469		163.15	97.253	1	5962500			14108	955	9145	9179	14321	14321					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7560729980469	2	493.756341	985.498129	-1.2696	-0.00062687	0.88873	0.00043881	-0.38087	-0.00018806	493.75675149103694	20.402	0.43512	20.402	20.326	20.761	0					24	13	3	0	0	0	0.034688	1	5681	5681		78.264	37.486	1	876110			14109	955	9145	9179	14322	14322					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.506591796875	3	329.506653	985.498129	-0.66765	-0.00021999	0.69045	0.00022751	0.022806	7.5147E-06	329.5067601243489	20.417	0.088287	20.417	20.359	20.447	0					6	2	3	0	0	0	0.44593	1	5701	5701		37.812	11.119	1	91838			14110	955	9145	9179	14323	14323					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.75640869140625	2	493.756341	985.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.411	1	20.411	19.911	20.911	0								0	0	0	0.12732	1	5695	5695		49.536	19.218	1				14111	955	9145	9179	14324	14324					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7564392089844	2	493.756341	985.498129	0.64379	0.00031788	-0.56649	-0.00027971	0.077306	3.8171E-05	493.7560929992842	20.621	0.56592	20.621	20.512	21.078	0					22	11	3	0	0	0	0.0034376	1	6720	6720		150.36	87.055	1	8780000			14112	955	9145	9179	14325	14325					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.5066833496094	3	329.506653	985.498129	1.5074	0.00049671	-1.256	-0.00041387	0.2514	8.2839E-05	329.5062051910727	20.621	0.41721	20.621	20.512	20.93	0					13	8	2	0	0	0	0.15163	1	6722	6722		67.494	33.321	1	1073800			14113	955	9145	9179	14326	14326					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7562255859375	2	493.756341	985.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.63	1	20.63	20.13	21.13	0								0	0	0	0.00095576	1	6715	6715		126.24	51.988	1				14114	955	9145	9179	14327	14327					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.756103515625	2	493.756341	985.498129	0.026949	1.3306E-05	-0.62865	-0.0003104	-0.6017	-0.0002971	493.75606671504625	20.483	0.31275	20.483	20.395	20.708	0					13	7	3	0	0	0	0.0071744	1	5777	5777		132.76	82.733	1	427470			14115	955	9145	9179	14328	14328					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.5066833496094	3	329.506653	985.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.535	1	20.535	20.035	21.035	0								0	0	0	0.35377	1	5792	5792		24.519	1.4767	1				14116	955	9145	9179	14329	14329					0.004800166119480309
GSYSLEEPK	9	Unmodified	_GSYSLEEPK_					0	0	0		SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant;ENSG00000115884|ENST00000254351|SDC1	SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant	SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2452392578125	2	505.245472	1008.47639	-0.049645	-2.5083E-05	-0.1554	-7.8513E-05	-0.20504	-0.0001036	505.24530253530014	27.031	0.29506	27.031	26.914	27.209	0					13	7	2	0	0	0	0.023928	1	9388	9388		115.49	30.579	1	1427600			14117	2944	9146	9180	14330	14330					-0.027508329272791343
GSYSLEEPK	9	Unmodified	_GSYSLEEPK_					0	0	0		SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant;ENSG00000115884|ENST00000254351|SDC1	SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant	SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.24542236328125	2	505.245472	1008.47639	-0.41527	-0.00020981	-0.20355	-0.00010284	-0.61882	-0.00031265	505.24543897178364	27.047	0.25894	27.047	26.944	27.203	0					11	5	3	0	0	0	0.048471	1	9764	9764		95.815	39.094	1	652330			14118	2944	9146	9180	14331	14331					-0.027508329272791343
GSYSLEEPK	9	Unmodified	_GSYSLEEPK_					0	0	0		SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant;ENSG00000115884|ENST00000254351|SDC1	SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant	SDC1|p.E283K|1|0.33|ENSG00000115884|chr2:20202852-20202852|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.24603271484375	2	505.245472	1008.47639	2.9342	0.0014825	-3.0765	-0.0015544	-0.14229	-7.1893E-05	505.24416006173664	26.976	0.4659	26.976	26.772	27.238	0					18	9	3	0	0	0	0.035062	1	9612	9612		104.06	2.4561	1	1219500			14119	2944	9146	9180	14332	14332					-0.027508329272791343
GSYVTHETK	9	Unmodified	_GSYVTHETK_					0	0	0		ENSG00000088986|ENST00000242577|DYNLL1;ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2	ENSG00000088986|ENST00000242577|DYNLL1	ENSG00000088986|ENST00000242577|DYNLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2509765625	2	511.251089	1020.48762	-0.1286	-6.5745E-05	0.40054	0.00020478	0.27194	0.00013903	511.25120922134874	15.274	0.20719	15.274	15.195	15.402	0					11	7	3	0	0	0	0.099758	1	3298	3298		82.75	31.558	1	579670			14120	1790	9147	9181	14333	14333					-0.021800108331376578
GSYVTHETK	9	Unmodified	_GSYVTHETK_					0	0	0		ENSG00000088986|ENST00000242577|DYNLL1;ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2	ENSG00000088986|ENST00000242577|DYNLL1	ENSG00000088986|ENST00000242577|DYNLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2513122558594	2	511.251089	1020.48762	-0.0024383	-1.2466E-06	0.32574	0.00016654	0.3233	0.00016529	511.25132537774067	15.569	0.33516	15.569	15.478	15.813	0					19	8	4	0	0	0	0.010427	1	4053	4053		136.27	59.494	1	4475900			14121	1790	9147	9181	14334	14334					-0.021800108331376578
GSYVTHETK	9	Unmodified	_GSYVTHETK_					0	0	0		ENSG00000088986|ENST00000242577|DYNLL1;ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2	ENSG00000088986|ENST00000242577|DYNLL1	ENSG00000088986|ENST00000242577|DYNLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.25115966796875	2	511.251089	1020.48762	-0.2315	-0.00011835	0.40777	0.00020847	0.17628	9.0121E-05	511.2512717706322	15.309	0.17784	15.309	15.219	15.397	0					10	5	3	0	0	0	0.019258	1	3467	3467		118.74	65.392	1	898480			14122	1790	9147	9181	14335	14335					-0.021800108331376578
GSYVTHETK	9	Unmodified	_GSYVTHETK_					0	0	0		ENSG00000088986|ENST00000242577|DYNLL1;ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2	ENSG00000088986|ENST00000242577|DYNLL1	ENSG00000088986|ENST00000242577|DYNLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2509460449219	2	511.251089	1020.48762	-0.43633	-0.00022307	0.32231	0.00016478	-0.11402	-5.8292E-05	511.2512511866644	15.558	0.56168	15.558	15.451	16.013	0					19	11	3	0	0	0	0.021015	1	4288	4288		115.49	44.198	1	2976100			14123	1790	9147	9181	14336	14336					-0.021800108331376578
GTAAGEKLK	9	Unmodified	_GTAAGEKLK_					0	0	0		ENSG00000203989|ENST00000371402|RHOXF2B;ENSG00000131721|ENST00000371388|RHOXF2	ENSG00000203989|ENST00000371402|RHOXF2B	ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.75299072265625	2	437.753267	873.491981	0.02255	9.8713E-06	-0.40524	-0.0001774	-0.38269	-0.00016752	437.75296535615956	24.032	0.14742	24.032	23.932	24.079	0					5	3	2	0	0	0	0.078509	1	8026	8026		85.161	2.4103	1	159680			14124	3734	9148	9182	14337	14337					0.05017498380414054
GTAAGEKLK	9	Unmodified	_GTAAGEKLK_					0	0	0		ENSG00000203989|ENST00000371402|RHOXF2B;ENSG00000131721|ENST00000371388|RHOXF2	ENSG00000203989|ENST00000371402|RHOXF2B	ENSG00000203989|ENST00000371402|RHOXF2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.75372314453125	2	437.753267	873.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.797	1	23.797	23.297	24.297	0								0	0	0	0.04624	1	7321	7321		87.696	2.5356	1				14125	3734	9148	9182	14338	14338					0.05017498380414054
GTAAKSITK	9	Unmodified	_GTAAKSITK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.76141357421875	2	438.761092	875.507631	0.26383	0.00011576	-0.34363	-0.00015077	-0.079799	-3.5013E-05	438.7609161317082	13.517	0.12655	13.517	13.472	13.599	0					12	6	3	0	0	0	0.0016668	1	2659	2659		176.44	57.702	1	372880			14126	3860	9149	9183	14339	14339					0.06489784897473783
GTAAKSITK	9	Unmodified	_GTAAKSITK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.7613525390625	2	438.761092	875.507631	-0.98399	-0.00043174	0.72347	0.00031743	-0.26052	-0.0001143	438.76139289790785	13.552	0.11414	13.552	13.494	13.609	0					14	6	3	0	0	0	0.003936	1	2799	2799		163.15	72.374	1	619030			14127	3860	9149	9183	14340	14340					0.06489784897473783
GTAAKSITK	9	Unmodified	_GTAAKSITK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.7613830566406	2	438.761092	875.507631	0.31846	0.00013973	-0.054673	-2.3989E-05	0.26378	0.00011574	438.7610966087802	13.553	0.11213	13.553	13.483	13.595	0					10	5	3	0	0	0	0.011389	1	2736	2736		138.06	47.693	1	259520			14128	3860	9149	9183	14341	14341					0.06489784897473783
GTAAKSITK	9	Unmodified	_GTAAKSITK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.76116943359375	2	438.761092	875.507631	-0.60076	-0.00026359	0.37989	0.00016668	-0.22087	-9.6909E-05	438.7612233769871	13.543	0.18246	13.543	13.474	13.657	0					16	9	3	0	0	0	0.0067848	1	2733	2733		150.36	37.951	1	627640			14129	3860	9149	9183	14342	14342					0.06489784897473783
GTAAKSITK	9	Unmodified	_GTAAKSITK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.76092529296875	2	438.761092	875.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.544	1	13.544	13.044	14.044	0								0	0	0	0.0011098	1	2739	2739		190.26	76.85	1				14130	3860	9149	9183	14343	14343					0.06489784897473783
GTAAKSITK	9	Unmodified	_GTAAKSITK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.7607421875	2	438.761092	875.507631	-0.57763	-0.00025344	0.017155	7.5269E-06	-0.56048	-0.00024592	438.7611026083489	13.724	0.25935	13.724	13.621	13.88	0					9	5	2	0	0	0	0.0030642	1	3242	3242		168.26	55.848	1	3071100			14131	3860	9149	9183	14344	14344					0.06489784897473783
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.8080749511719	2	502.808574	1003.60259	-0.049646	-2.4962E-05	-0.21881	-0.00011002	-0.26846	-0.00013498	502.8084514052995	12.53	0.095943	12.53	12.486	12.582	0					12	5	3	0	0	0	0.0036876	1	2385	2385		148.69	69.239	1	326860			14132	3860	9150	9184	14345	14345					0.10093718368671034
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.5415954589844	3	335.541475	1003.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.795	1	12.795	12.295	13.295	0								0	0	0	0.33707	1	2769	2769		45.022	9.8702	1				14133	3860	9150	9184	14346	14346					0.10093718368671034
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.8083801269531	2	502.808574	1003.60259	-0.068653	-3.4519E-05	-0.21331	-0.00010725	-0.28196	-0.00014177	502.80845986625445	12.794	0.29491	12.794	12.711	13.006	0					15	8	2	0	0	0	0.007513	1	2772	2772		157.34	57.97	1	4626400			14134	3860	9150	9184	14347	14347					0.10093718368671034
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.541259765625	3	335.541475	1003.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.797	1	12.797	12.297	13.297	0								0	0	0	0.017247	1	2968	2968		114.86	56.628	1				14135	3860	9150	9184	14348	14348					0.10093718368671034
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.8083190917969	2	502.808574	1003.60259	-0.51452	-0.00025871	0.35777	0.00017989	-0.15675	-7.8818E-05	502.80873401440067	12.795	0.44465	12.795	12.699	13.144	0					14	10	3	0	0	0	0.0063842	1	2957	2957		152.06	52.686	1	1493400			14136	3860	9150	9184	14349	14349					0.10093718368671034
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.8085021972656	2	502.808574	1003.60259	-2.0616	-0.0010366	2.341	0.0011771	0.27945	0.00014051	502.80986844141887	12.517	0.091043	12.517	12.46	12.551	0					8	5	2	0	0	0	0.026439	1	2428	2428		120.31	38.065	1	169170			14137	3860	9150	9184	14350	14350					0.10093718368671034
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.5413818359375	3	335.541475	1003.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.772	1	12.772	12.272	13.272	0								0	0	0	0.016847	1	2801	2801		99.788	48.595	1				14138	3860	9150	9184	14351	14351					0.10093718368671034
GTAALGCLVK	10	Carbamidomethyl (C)	_GTAALGC(Carbamidomethyl (C))LVK_	GTAALGC(1)LVK		GTAALGC(85)LVK		0	1	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857|IGHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.275634765625	2	495.276052	988.537551	-0.064074	-3.1734E-05	-0.98116	-0.00048595	-1.0452	-0.00051768	495.27565759412033	32.592	0.19038	32.592	32.508	32.699	0					12	8	2	0	0	0	0.15878	1	10543	10543		85.161	32.224	1	99907			14139	11750	9151	9185	14352	14352	468				0.04282400571173639
GTAALGCLVK	10	Carbamidomethyl (C)	_GTAALGC(Carbamidomethyl (C))LVK_	GTAALGC(1)LVK		GTAALGC(120)LVK		0	1	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857|IGHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.27532958984375	2	495.276052	988.537551	-0.4019	-0.00019905	-0.49671	-0.00024601	-0.89861	-0.00044506	495.2759861587682	32.901	0.34351	32.901	32.775	33.119	0					18	9	3	0	0	0	0.021567	1	12108	12108		124.08	54.452	1	689620			14140	11750	9151	9185	14353	14353	468				0.04282400571173639
GTAALGCLVK	10	Carbamidomethyl (C)	_GTAALGC(Carbamidomethyl (C))LVK_	GTAALGC(1)LVK		GTAALGC(96)LVK		0	1	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857|IGHG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.27484130859375	2	495.276052	988.537551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.647	1	32.647	32.147	33.147	0								0	0	0	0.031873	1	10903	10903		95.815	26.188	1				14141	11750	9151	9185	14354	14354	468				0.04282400571173639
GTAALGCLVK	10	Carbamidomethyl (C)	_GTAALGC(Carbamidomethyl (C))LVK_	GTAALGC(1)LVK		GTAALGC(85)LVK		0	1	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857|IGHG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2745056152344	2	495.276052	988.537551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.639	1	32.639	32.139	33.139	0								0	0	0	0.074065	1	11368	11368		85.161	20.954	1				14142	11750	9151	9185	14355	14355	468				0.04282400571173639
GTAALGCLVK	10	Carbamidomethyl (C)	_GTAALGC(Carbamidomethyl (C))LVK_	GTAALGC(1)LVK		GTAALGC(88)LVK		0	1	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857|IGHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2755432128906	2	495.276052	988.537551	2.8359	0.0014045	-4.0979	-0.0020296	-1.262	-0.00062505	495.27435334648754	32.849	0.3093	32.849	32.737	33.046	0					13	6	3	0	0	0	0.14426	1	12436	12436		87.696	30.975	1	710470			14143	11750	9151	9185	14356	14356	468				0.04282400571173639
GTAASVSFMF	10	Unmodified	_GTAASVSFMF_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2407531738281	2	509.239135	1016.46372	0.99269	0.00050552	1.8655	0.00094997	2.8582	0.0014555	509.2403854368986	25.873	0.98458	25.873	25.744	26.729	0					73	29	4	0	0	0	0.64178	1	8127	8127		29.15	0.89528	1	2027800			14144	4374	9152	9186	14357	14357					-0.04385567591157269
GTACGKYYR	9	Carbamidomethyl (C)	_GTAC(Carbamidomethyl (C))GKYYR_	GTAC(1)GKYYR		GTAC(120)GKYYR		0	1	0		ENST00000480085.1_1_6:114160699-114160804:+|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000480085.1_1_6:114160699-114160804:+|nuORF	ENST00000480085.1_1_6:114160699-114160804:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2535400390625	2	538.253108	1074.49166	0.23297	0.0001254	-0.1675	-9.0155E-05	0.065478	3.5244E-05	538.2529676421535	17.221	0.21049	17.221	17.134	17.344	0					11	5	3	0	0	0	0.021961	1	4825	4825		118.74	70.827	1	460860			14145	5175	9153	9187	14358	14358	210				-0.04260244611077724
GTACGKYYR	9	Carbamidomethyl (C)	_GTAC(Carbamidomethyl (C))GKYYR_	GTAC(1)GKYYR		GTAC(74)GKYYR		0	1	0		ENST00000480085.1_1_6:114160699-114160804:+|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000480085.1_1_6:114160699-114160804:+|nuORF	ENST00000480085.1_1_6:114160699-114160804:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2542724609375	2	538.253108	1074.49166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.007	1	17.007	16.507	17.507	0								0	0	0	0.091069	1	4151	4151		74.255	13.283	1				14146	5175	9153	9187	14359	14359	210				-0.04260244611077724
GTACGKYYR	9	Carbamidomethyl (C)	_GTAC(Carbamidomethyl (C))GKYYR_	GTAC(1)GKYYR		GTAC(96)GKYYR		0	1	0		ENST00000480085.1_1_6:114160699-114160804:+|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000480085.1_1_6:114160699-114160804:+|nuORF	ENST00000480085.1_1_6:114160699-114160804:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.25341796875	2	538.253108	1074.49166	3.3653	0.0018114	-3.1882	-0.0017161	0.17708	9.5313E-05	538.2515220930234	17.167	0.16918	17.167	17.107	17.276	0					5	3	2	0	0	0	0.048471	1	4913	4913		95.815	33.708	1	904180			14147	5175	9153	9187	14360	14360	210				-0.04260244611077724
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2490844726562	2	516.24888	1030.48321	0.27521	0.00014207	-0.086553	-4.4683E-05	0.18865	9.7392E-05	516.2488611207716	22.125	0.51943	22.125	22.012	22.532	0					38	15	4	0	0	0	0.01942	1	6182	6182		117.81	52.346	1	6558700			14148	6977	9154	9188	14361	14361					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2489013671875	2	516.24888	1030.48321	0.036673	1.8932E-05	0.20971	0.00010826	0.24638	0.00012719	516.2491607652546	22.423	0.76975	22.423	22.323	23.093	0					61	18	6	0	0	0	0.0059342	1	7268	7268		138.06	70.569	1	37516000			14149	6977	9154	9188	14362	14362					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.50164794921875	3	344.501679	1030.48321	0.50495	0.00017396	-0.71182	-0.00024522	-0.20687	-7.1268E-05	344.5016350611281	22.423	0.8534	22.423	22.323	23.177	0					55	20	5	0	0	0	0.22837	1	7269	7269		58.23	5.2932	1	22254000			14150	6977	9154	9188	14363	14363					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.248779296875	2	516.24888	1030.48321	-0.044848	-2.3152E-05	0.49536	0.00025573	0.45051	0.00023257	516.2491044612631	22.169	0.40815	22.169	22.071	22.479	0					23	12	3	0	0	0	0.021035	1	6460	6460		114.89	65.359	1	1577900			14151	6977	9154	9188	14364	14364					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2489624023438	2	516.24888	1030.48321	0.09569	4.94E-05	0.0071608	3.6967E-06	0.10285	5.3097E-05	516.2488678403191	22.164	0.33372	22.164	22.059	22.393	0					20	10	3	0	0	0	0.014648	1	6469	6469		114.89	72.03	1	1439600			14152	6977	9154	9188	14365	14365					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2488403320312	2	516.24888	1030.48321	-0.50967	-0.00026311	0.4027	0.0002079	-0.10696	-5.5218E-05	516.2490916980338	22.341	0.75649	22.341	22.187	22.944	0					31	15	4	0	0	0	0.0059342	1	7535	7535		138.06	60.745	1	9134200			14153	6977	9154	9188	14366	14366					-0.030814752560445413
GTAEPGGSMK	10	Unmodified	_GTAEPGGSMK_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.71832275390625	2	467.718567	933.422581	0.33716	0.00015769	-1.3465	-0.00062978	-1.0093	-0.00047209	467.71810260903186	17.218	0.33931	17.218	17.018	17.357	0					30	8	4	0	0	0	0.026898	1	4779	4779		120.31	46.051	1	1825100			14154	6993	9155	9189	14367	14367					-0.04679328630629698
GTAEPGGSMK	10	Unmodified	_GTAEPGGSMK_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7181701660156	2	467.718567	933.422581	-0.13044	-6.1008E-05	-1.0896	-0.00050962	-1.22	-0.00057063	467.7182724038113	17.174	0.45719	17.174	16.964	17.421	0					21	9	3	0	0	0	0.19191	1	5016	5016		80.455	9.1589	1	394610			14155	6993	9155	9189	14368	14368					-0.04679328630629698
GTAEPGGSMK	10	Unmodified	_GTAEPGGSMK_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7182312011719	2	467.718567	933.422581	0.6437	0.00030107	-1.6182	-0.00075684	-0.97446	-0.00045577	467.7179945503816	17.159	0.45323	17.159	16.996	17.449	0					23	9	4	0	0	0	0.536	1	5037	5037		41.427	3.6151	1	1313700			14156	6993	9155	9189	14369	14369					-0.04679328630629698
GTAEPGGSMK	10	Unmodified	_GTAEPGGSMK_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.71893310546875	2	467.718567	933.422581	-0.1976	-9.2421E-05	0.32207	0.00015064	0.12447	5.8219E-05	467.71873631391855	16.976	0.3385	16.976	16.817	17.156	0					21	9	3	0	0	0	0.4758	1	4097	4097		47.96	5.5634	1	134280			14157	6993	9155	9189	14370	14370					-0.04679328630629698
GTAEPGGSMK	10	Unmodified	_GTAEPGGSMK_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.71856689453125	2	467.718567	933.422581	-0.72703	-0.00034004	0.48572	0.00022718	-0.2413	-0.00011286	467.71886177604995	16.952	0.43458	16.952	16.806	17.24	0					26	12	3	0	0	0	0.50881	1	4092	4092		44.377	3.599	1	216410			14158	6993	9155	9189	14371	14371					-0.04679328630629698
GTAEPGGSMK	10	Unmodified	_GTAEPGGSMK_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7181091308594	2	467.718567	933.422581	-0.51012	-0.00023859	-0.47581	-0.00022254	-0.98593	-0.00046114	467.71848774574175	17.135	0.50686	17.135	16.94	17.447	0					30	10	4	0	0	0	0.022799	1	4856	4856		123.21	54.421	1	1455800			14159	6993	9155	9189	14372	14372					-0.04679328630629698
GTAGNGWFNK	10	Unmodified	_GTAGNGWFNK_					0	0	0		ENST00000525241.1_1_11:35211476-35226207:+|nuORF;ENST00000534296.5_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2521362304688	2	526.251423	1050.48829	0.62319	0.00032795	0.8108	0.00042668	1.434	0.00075464	526.2518529631012	31.261	0.32456	31.261	31.141	31.466	0					25	13	3	0	0	0	0.12896	1	10014	10014		90.37	54.752	1	211310			14160	10358	9156	9190	14373	14373					-0.03493171393438388
GTAGNGWFNK	10	Unmodified	_GTAGNGWFNK_					0	0	0		ENST00000525241.1_1_11:35211476-35226207:+|nuORF;ENST00000534296.5_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2515258789062	2	526.251423	1050.48829	0.10035	5.2812E-05	0.97423	0.00051269	1.0746	0.0005655	526.2519801700631	31.504	0.377	31.504	31.402	31.779	0					30	9	4	0	0	0	0.0093795	1	11472	11472		145.16	51.96	1	1359100			14161	10358	9156	9190	14374	14374					-0.03493171393438388
GTAGNGWFNK	10	Unmodified	_GTAGNGWFNK_					0	0	0		ENST00000525241.1_1_11:35211476-35226207:+|nuORF;ENST00000534296.5_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.251708984375	2	526.251423	1050.48829	0.45055	0.0002371	0.64671	0.00034033	1.0973	0.00057744	526.2518041760977	31.278	0.43214	31.278	31.159	31.591	0					45	16	4	0	0	0	0.097781	1	10336	10336		95.815	41.05	1	909870			14162	10358	9156	9190	14375	14375					-0.03493171393438388
GTAGNGWFNK	10	Unmodified	_GTAGNGWFNK_					0	0	0		ENST00000525241.1_1_11:35211476-35226207:+|nuORF;ENST00000534296.5_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2520141601562	2	526.251423	1050.48829	1.2009	0.000632	-0.78621	-0.00041375	0.41472	0.00021825	526.2510026998324	31.311	0.47797	31.311	31.199	31.677	0					21	12	3	0	0	0	0.04084	1	10742	10742		112.41	45.982	1	337280			14163	10358	9156	9190	14376	14376					-0.03493171393438388
GTAGNGWFNK	10	Unmodified	_GTAGNGWFNK_					0	0	0		ENST00000525241.1_1_11:35211476-35226207:+|nuORF;ENST00000534296.5_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2516479492188	2	526.251423	1050.48829	-1.2239	-0.00064405	2.0917	0.0011007	0.86783	0.00045669	526.2525209874732	31.322	0.43639	31.322	31.157	31.593	0					28	11	3	0	0	0	0.08194	1	10733	10733		98.582	50.925	1	734770			14164	10358	9156	9190	14377	14377					-0.03493171393438388
GTAGNGWFNK	10	Unmodified	_GTAGNGWFNK_					0	0	0		ENST00000525241.1_1_11:35211476-35226207:+|nuORF;ENST00000534296.5_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	ENST00000525241.1_1_11:35211476-35226207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.25146484375	2	526.251423	1050.48829	1.6277	0.00085656	-0.93417	-0.00049161	0.69349	0.00036495	526.2508539655203	31.468	0.46456	31.468	31.353	31.818	0					23	9	3	0	0	0	0.0058631	1	11755	11755		163.15	72.781	1	2569800			14165	10358	9156	9190	14378	14378					-0.03493171393438388
GTAGPRAAEI	10	Unmodified	_GTAGPRAAEI_					0	0	0		ENST00000600947.5_2_19:50170377-50176985:+|nuORF;nc|ENSG00000126453|Q9HB09-2|BCL2L12	ENST00000600947.5_2_19:50170377-50176985:+|nuORF	ENST00000600947.5_2_19:50170377-50176985:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.755859375	2	471.753798	941.493044	2.4668	0.0011637	1.0335	0.00048758	3.5003	0.0016513	471.7542263975722	33.176	0.50693	33.176	33.076	33.583	0					31	10	5	0	0	0	0.43008	1	12572	12572		52.937	1.6012	1	9791100			14166	11033	9157	9191	14379	14379					0.019957127493285043
GTAIIQLPSK	10	Unmodified	_GTAIIQLPSK_					0	0	0		OBSL1-MRPL2|1|fusion;ENST00000485654.1_1_6:43022014-43023405:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2	OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.3119506835938	2	514.310949	1026.60735	0.091822	4.7225E-05	0.26339	0.00013546	0.35521	0.00018269	514.3110327728022	35.32	0.34871	35.32	35.148	35.497	0					27	17	3	0	0	0	0.13663	1	11572	11572		89.029	18.213	1	77962			14167	11869	9158	9192	14380	14380					0.09510602511409161
GTAIIQLPSK	10	Unmodified	_GTAIIQLPSK_					0	0	0		OBSL1-MRPL2|1|fusion;ENST00000485654.1_1_6:43022014-43023405:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2	OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.3109130859375	2	514.310949	1026.60735	0.021548	1.1082E-05	0.043074	2.2153E-05	0.064621	3.3235E-05	514.3110015220775	35.637	0.49509	35.637	35.334	35.829	0					30	13	3	0	0	0	0.13022	1	13365	13365		90.149	12.831	1	724130			14168	11869	9158	9192	14381	14381					0.09510602511409161
GTAIIQLPSK	10	Unmodified	_GTAIIQLPSK_					0	0	0		OBSL1-MRPL2|1|fusion;ENST00000485654.1_1_6:43022014-43023405:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2	OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3112182617188	2	514.310949	1026.60735	1.3545	0.00069662	-1.5038	-0.00077344	-0.14936	-7.6818E-05	514.3099854212836	35.636	0.29974	35.636	35.459	35.759	0					16	8	3	0	0	0	0.21577	1	13821	13821		77.533	10.04	1	203110			14169	11869	9158	9192	14382	14382					0.09510602511409161
GTAIIQLPSK	10	Unmodified	_GTAIIQLPSK_					0	0	0		OBSL1-MRPL2|1|fusion;ENST00000485654.1_1_6:43022014-43023405:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2	OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3109130859375	2	514.310949	1026.60735	-0.48411	-0.00024898	0.71391	0.00036717	0.2298	0.00011819	514.3112697458532	35.584	0.33622	35.584	35.408	35.744	0					21	9	3	0	0	0	0.23114	1	13799	13799		75.652	13.545	1	182500			14170	11869	9158	9192	14383	14383					0.09510602511409161
GTAIQVITNK	10	Unmodified	_GTAIQVITNK_					0	0	0		nc|ENSG00000114455|Q9UM44-2|HHLA2;ENSG00000114455|ENST00000467761|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.30712890625	2	522.806031	1043.59751	0.79217	0.00041415	0.0041338	2.1612E-06	0.7963	0.00041631	522.8061499821187	29.407	0.066242	29.407	29.354	29.421	0					4	2	2	0	0	0	0.28675	1	9276	9276		68.846	14.124	1	56631			14171	2851	9159	9193	14384	14384					0.07745414506052839
GTAKLKITMLE	11	Unmodified	_GTAKLKITMLE_					0	0	0			REV__ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant	REV__ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.236083984375	3	402.237175	1203.68969	-2.2604	-0.00090923	-0.31631	-0.00012723	-2.5767	-0.0010365	402.23707536238516	33.289	0.24323	33.289	33.171	33.414	0					14	7	3	0	0	0	0.73562	1	11674	11674		24.232	0.85391	1	171860	+		14172	15352	9160	9194	14385	14385					0.09599756528064063
GTAKSQFLK	9	Unmodified	_GTAKSQFLK_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2817077636719	2	490.282192	978.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.562	1	19.562	19.062	20.062	0								0	0	0	0.18645	1	5083	5083		52.937	3.4952	1				14173	1509	9161	9195	14386	14386					0.05969760305845284
GTAKSQFLK	9	Unmodified	_GTAKSQFLK_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2818298339844	2	490.282192	978.549831	0.44619	0.00021876	-1.0298	-0.00050492	-0.58365	-0.00028615	490.28168640716456	19.894	0.21019	19.894	19.795	20.005	0					8	4	3	0	0	0	0.011389	1	6092	6092		138.06	53.147	1	1081300			14174	1509	9161	9195	14387	14387					0.05969760305845284
GTAKSQFLK	9	Unmodified	_GTAKSQFLK_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.28228759765625	2	490.282192	978.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.619	1	19.619	19.119	20.119	0								0	0	0	0.25587	1	5347	5347		42.864	3.6114	1				14175	1509	9161	9195	14388	14388					0.05969760305845284
GTAKSQFLK	9	Unmodified	_GTAKSQFLK_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2818603515625	2	490.282192	978.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.808	1	19.808	19.308	20.308	0								0	0	0	0.045272	1	6323	6323		88.177	32.673	1				14176	1509	9161	9195	14389	14389					0.05969760305845284
GTAKSQLLK	9	Unmodified	_GTAKSQLLK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2894287109375	2	473.290017	944.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.132	1	18.132	17.632	18.632	0								0	0	0	0.25587	1	5247	5247		42.864	0.46813	1				14177	1996	9162	9196	14390	14390					0.0909804682290769
GTAKTGSGKT	10	Unmodified	_GTAKTGSGKT_					0	0	0		DDX42|p.I296T|1|0.09|ENSG00000198231|chr17:63807764-63807764|T/C|missense_variant	DDX42|p.I296T|1|0.09|ENSG00000198231|chr17:63807764-63807764|T/C|missense_variant	DDX42|p.I296T|1|0.09|ENSG00000198231|chr17:63807764-63807764|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.24749755859375	2	454.245806	906.47706	4.0156	0.0018241	0.018178	8.2574E-06	4.0338	0.0018323	454.24582689624185	24.112	0.37793	24.112	23.86	24.237	0					24	12	3	0	0	0	0.46128	1	7268	7268		49.536	8.7579	1	175040			14178	761	9163	9197	14391	14391					0.020080065124375324
GTAKVDFLK	9	Unmodified	_GTAKVDFLK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7848205566406	2	489.784567	977.554582	0.79548	0.00038961	0.74877	0.00036674	1.5442	0.00075635	489.7849245340269	27.505	0.21706	27.505	27.419	27.636	0					8	5	2	0	0	0	0.16806	1	9629	9629		65.465	3.358	1	239670			14179	3867	9164	9198	14392	14392					0.06490644448615512
GTAKVDFLKK	10	Unmodified	_GTAKVDFLKK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.55694580078125	3	369.557125	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.643	1	22.643	22.143	23.143	0								0	0	0	0.4044	1	7693	7693		34.087	8.5124	1				14180	3867	9165	9199	14393	14393					0.10094577919812764
GTALEADQWL	10	Unmodified	_GTALEADQWL_					0	0	0			REV__BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant	REV__BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.2720336914062	2	552.272021	1102.52949	1.1459	0.00063286	-0.22057	-0.00012182	0.92535	0.00051104	552.2719365605627	29.769	0.1822	29.769	29.694	29.876	0					6	5	2	0	0	0	0.67098	1	10071	10071		25.574	0	1	53499	+		14181	12292	9166	9200	14394	14394					-0.017674551446361875
GTALKQPA	8	Unmodified	_GTALKQPA_					0	0	0		ENSG00000170166|ENST00000306324|HOXD4	ENSG00000170166|ENST00000306324|HOXD4	ENSG00000170166|ENST00000306324|HOXD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	393.22930908203125	2	393.229428	784.444303	2.0379	0.00080136	-1.7315	-0.00068087	0.3064	0.00012049	393.2287928188855	18.956	0.39303	18.956	18.766	19.159	0					18	11	2	0	0	0	0.60719	1	4754	4754		47.916	0	1	218820			14182	6214	9167	9201	14395	14395					0.04345844180227232
GTALLHIYDK	10	Unmodified	_GTALLHIYDK_					0	0	0		ENSG00000165816|ENST00000392982|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2;nc|ENSG00000165816|Q5GFL6-3|VWA2	ENSG00000165816|ENST00000392982|VWA2	ENSG00000165816|ENST00000392982|VWA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.8145141601562	2	565.813856	1129.61316	1.9146	0.0010833	-0.83402	-0.0004719	1.0805	0.00061139	565.8133338108031	32.683	0.32985	32.683	32.555	32.885	0					16	8	3	0	0	0	0.31894	1	12454	12454		65.157	26.351	1	276930			14183	5832	9168	9202	14396	14396					0.05353701023091162
GTALVGSQK	9	Unmodified	_GTALVGSQK_					0	0	0		ENSG00000137309|ENST00000311487|HMGA1;nc|ENSG00000137309|P17096-3|HMGA1;ENST00000430198.2_1_4:73964637-73964859:+|nuORF	ENSG00000137309|ENST00000311487|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.74481201171875	2	430.745442	859.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.294	1	18.294	17.794	18.794	0								0	0	0	0.040385	1	4530	4530		90.601	23.107	1				14184	4158	9169	9203	14397	14397					0.04097211863393113
GTALVGSQK	9	Unmodified	_GTALVGSQK_					0	0	0		ENSG00000137309|ENST00000311487|HMGA1;nc|ENSG00000137309|P17096-3|HMGA1;ENST00000430198.2_1_4:73964637-73964859:+|nuORF	ENSG00000137309|ENST00000311487|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7454833984375	2	430.745442	859.476331	-0.52574	-0.00022646	0.36532	0.00015736	-0.16042	-6.9099E-05	430.74562885991367	18.637	0.21431	18.637	18.547	18.762	0					10	5	3	0	0	0	0.0080613	1	5499	5499		145.16	33.507	1	461700			14185	4158	9169	9203	14398	14398					0.04097211863393113
GTALVGSQK	9	Unmodified	_GTALVGSQK_					0	0	0		ENSG00000137309|ENST00000311487|HMGA1;nc|ENSG00000137309|P17096-3|HMGA1;ENST00000430198.2_1_4:73964637-73964859:+|nuORF	ENSG00000137309|ENST00000311487|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7452392578125	2	430.745442	859.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.573	1	18.573	18.073	19.073	0								0	0	0	0.11159	1	5584	5584		68.846	5.3123	1				14186	4158	9169	9203	14399	14399					0.04097211863393113
GTAMLFHL	8	Unmodified	_GTAMLFHL_					0	0	0			REV__ENST00000299427.10_2_11:6636185-6636499:-|nuORF	REV__ENST00000299427.10_2_11:6636185-6636499:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2320251464844	2	445.233656	888.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.737	1	23.737	23.237	24.237	0								0	0	0	1.7419	1	7900	7900		39.021	2.5747	1		+		14187	18196	9170	9204	14400	14400					0.004070748252047451
GTAPAFKQK	9	Unmodified	_GTAPAFKQK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.P1126Qfs*8|1|0.11|ENSG00000065534|chr3:123700091-123700091|G/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2690124511719	2	474.269084	946.523616	-0.26058	-0.00012358	0.21178	0.00010044	-0.048795	-2.3142E-05	474.26919303076863	16.5	0.17329	16.5	16.403	16.576	0					14	5	4	0	0	0	0.019882	1	3758	3758		122.18	58.87	1	784380			14188	1374	9171	9205	14401	14401					0.048214911343848144
GTAPAFKQK	9	Unmodified	_GTAPAFKQK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.P1126Qfs*8|1|0.11|ENSG00000065534|chr3:123700091-123700091|G/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2687683105469	2	474.269084	946.523616	-0.48085	-0.00022805	-0.16831	-7.9822E-05	-0.64915	-0.00030787	474.26899139376775	16.776	0.36767	16.776	16.691	17.058	0					24	9	4	0	0	0	0.0406	1	4619	4619		98.629	35.323	1	4248700			14189	1374	9171	9205	14402	14402					0.048214911343848144
GTAPAFKQK	9	Unmodified	_GTAPAFKQK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.P1126Qfs*8|1|0.11|ENSG00000065534|chr3:123700091-123700091|G/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2686767578125	2	474.269084	946.523616	-0.59331	-0.00028139	0.075687	3.5896E-05	-0.51762	-0.00024549	474.26906444401226	16.507	0.1894	16.507	16.417	16.606	0					11	5	3	0	0	0	0.063823	1	3962	3962		90.37	21.583	1	743420			14190	1374	9171	9205	14403	14403					0.048214911343848144
GTAPAFKQK	9	Unmodified	_GTAPAFKQK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.P1126Qfs*8|1|0.11|ENSG00000065534|chr3:123700091-123700091|G/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.26885986328125	2	474.269084	946.523616	-0.56621	-0.00026853	0.22673	0.00010753	-0.33948	-0.000161	474.2691644019994	16.704	0.29968	16.704	16.596	16.896	0					16	6	4	0	0	0	0.0051608	1	4836	4836		157.33	72.414	1	2523000			14191	1374	9171	9205	14404	14404					0.048214911343848144
GTAPIETR	8	Unmodified	_GTAPIETR_					0	0	0		ENST00000383168.8_2_18:24434304-24434469:-|nuORF	ENST00000383168.8_2_18:24434304-24434469:-|nuORF	ENST00000383168.8_2_18:24434304-24434469:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7293701171875	2	422.729792	843.445031	1.2607	0.00053292	-0.72745	-0.00030751	0.53321	0.0002254	422.72936279342406	15.345	0.2087	15.345	15.253	15.462	0					14	8	3	0	0	0	0.3961	1	3310	3310		71.296	4.8664	1	70538			14192	9128	9172	9206	14405	14405					0.017046388292783377
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5338439941406	3	336.53432	1006.58113	0.2415	8.1274E-05	-0.41542	-0.0001398	-0.17392	-5.853E-05	336.5341853664852	30.284	0.7726	30.284	29.861	30.634	0					43	28	2	0	0	0	0.70877	1	9511	9511		26.063	9.5902	1	134350	+		14193	19266	9173	9207	14406	14406					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341796875	3	336.53432	1006.58113	0.24136	8.1227E-05	-0.55762	-0.00018766	-0.31626	-0.00010643	336.5341107950799	33.422	0.9894	33.422	33.084	34.073	0					74	39	2	0	0	0	0.74091	1	10918	10918		14.694	0	1	153680	+		14194	19266	9173	9207	14407	14407					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5338439941406	3	336.53432	1006.58113	0.24149	8.127E-05	-0.74478	-0.00025065	-0.50329	-0.00016937	336.534038808667	40.411	0.45181	40.411	40.1	40.552	0					45	27	2	0	0	0	0.65213	1	13025	13025		32.751	11.065	1	83491	+		14195	19266	9173	9207	14408	14408					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.53432	1006.58113	0.2413	8.1207E-05	-0.37577	-0.00012646	-0.13447	-4.5253E-05	336.5342206695993	44.452	0.24662	44.452	44.348	44.595	0					21	15	2	0	0	0	0.70877	1	13918	13918		20.03	4.0237	1	63288	+		14196	19266	9173	9207	14409	14409					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.996	1	32.996	32.496	33.496	0								0	0	0	0.4201	1	12164	12164		27.047	6.1004	1		+		14197	19266	9173	9207	14410	14410					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.53387451171875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.076	1	38.076	37.576	38.576	0								0	0	0	0.4201	1	14459	14459		20.03	0	1		+		14198	19266	9173	9207	14411	14411					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343017578125	3	336.53432	1006.58113	-0.67405	-0.00022684	0.46691	0.00015713	-0.20713	-6.9707E-05	336.5345208417326	31.096	0.36174	31.096	30.87	31.231	0					23	13	2	0	0	0	0.70877	1	10297	10297		20.03	0.033703	1	93923	+		14199	19266	9173	9207	14412	14412					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5340881347656	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.679	1	51.679	51.179	52.179	0								0	0	0	0.4201	1	19164	19164		27.047	3.5246	1		+		14200	19266	9173	9207	14413	14413					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.228	1	34.228	33.728	34.728	0								0	0	0	0.4201	1	13175	13175		20.03	0.92695	1		+		14201	19266	9173	9207	14414	14414					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.485	1	42.485	41.985	42.985	0								0	0	0	0.4201	1	16673	16673		27.047	9.6824	1		+		14202	19266	9173	9207	14415	14415					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53411865234375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.771	1	39.771	39.271	40.271	0								0	0	0	0.4201	1	14164	14164		27.047	6.1004	1		+		14203	19266	9173	9207	14416	14416					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.57	1	47.57	47.07	48.07	0								0	0	0	0.4201	1	15909	15909		20.837	5.9723	1		+		14204	19266	9173	9207	14417	14417					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.116	1	41.116	40.616	41.616	0								0	0	0	0.4201	1	16332	16332		27.047	11.406	1		+		14205	19266	9173	9207	14418	14418					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.574	1	46.574	46.074	47.074	0								0	0	0	0.4201	1	18633	18633		20.03	0.92695	1		+		14206	19266	9173	9207	14419	14419					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.685	1	49.685	49.185	50.185	0								0	0	0	0.40862	1	19642	19642		40.058	19.111	1		+		14207	19266	9173	9207	14420	14420					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.226	1	55.226	54.726	55.726	0								0	0	0	0.4201	1	20943	20943		19.263	3.6209	1		+		14208	19266	9173	9207	14421	14421					0.07810333339955378
GTAPLVILSH	10	Unmodified	_GTAPLVILSH_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.534423828125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.913	1	55.913	55.413	56.413	0								0	0	0	0.4201	1	21063	21063		27.047	4.0048	1		+		14209	19266	9173	9207	14422	14422					0.07810333339955378
GTAPSLRPG	9	Unmodified	_GTAPSLRPG_					0	0	0		ENST00000252136.11_2_22:20104501-20104702:-|nuORF	ENST00000252136.11_2_22:20104501-20104702:-|nuORF	ENST00000252136.11_2_22:20104501-20104702:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.23785400390625	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.313	1	19.313	18.813	19.813	0								0	0	0	0.22284	1	5207	5207		47.657	1.6851	1				14210	8245	9174	9208	14423	14423					0.027963450661786737
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2742004394531	2	477.274367	952.53418	0.39199	0.00018709	-0.83218	-0.00039718	-0.44019	-0.00021009	477.273898944431	36.011	0.28007	36.011	35.903	36.183	0					16	7	3	0	0	0	0.0025054	1	13550	13550		171.53	0	1	311160			14211	8008	9175	9209	14424	14424					0.056014737887949195
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2740173339844	2	477.274367	952.53418	-1.4914	-0.00071182	0.92367	0.00044084	-0.56776	-0.00027098	477.2747468619767	35.771	0.196	35.771	35.695	35.891	0					20	9	3	0	0	0	0.098791	1	12098	12098		79.713	0	1	158280			14212	8008	9175	9209	14425	14425					0.056014737887949195
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2740478515625	2	477.274367	952.53418	0.6416	0.00030622	-0.87454	-0.0004174	-0.23294	-0.00011118	477.2739145869455	35.989	0.36071	35.989	35.853	36.214	0					24	11	3	0	0	0	0.00073892	1	13979	13979		185.55	0	1	787600			14213	8008	9175	9209	14426	14426					0.056014737887949195
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2738342285156	2	477.274367	952.53418	-0.3441	-0.00016423	-0.68605	-0.00032744	-1.0301	-0.00049166	477.27406478348865	35.801	0.18187	35.801	35.688	35.869	0					10	6	2	0	0	0	0.021961	1	12766	12766		118.74	0	1	70737			14214	8008	9175	9209	14427	14427					0.056014737887949195
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.27398681640625	2	477.274367	952.53418	0.82076	0.00039173	-1.5066	-0.00071907	-0.68587	-0.00032735	477.2736262597946	35.923	0.31566	35.923	35.817	36.132	0					15	6	3	0	0	0	0.00073892	1	13925	13925		185.55	0	1	672870			14215	8008	9175	9209	14428	14428					0.056014737887949195
GTAREPAIA	9	Unmodified	_GTAREPAIA_					0	0	0			REV__ENST00000302754.5_1_19:12902343-12902412:+|nuORF	REV__ENST00000302754.5_1_19:12902343-12902412:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.24285888671875	2	443.243067	884.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.664	1	19.664	19.164	20.164	0								0	0	0	0.37517	1	5974	5974		18.262	0	1		+		14216	18215	9176	9210	14429	14429					0.024723277206135208
GTASLAQVHK	10	Unmodified	_GTASLAQVHK_					0	0	0		ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant;nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.2823486328125	2	506.282723	1010.55089	-0.07934	-4.0168E-05	0.35105	0.00017773	0.27171	0.00013756	506.2828257685095	19.092	0.10842	19.092	19.025	19.133	0					5	3	2	0	0	0	0.4758	1	4866	4866		47.96	1.9873	1	213490			14217	65	9177	9211	14430	14430					0.04603974674762412
GTASLAQVHK	10	Unmodified	_GTASLAQVHK_					0	0	0		ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant;nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2828369140625	2	506.282723	1010.55089	-0.041025	-2.077E-05	0.078282	3.9633E-05	0.037257	1.8862E-05	506.2828196625035	19.397	0.22977	19.397	19.339	19.569	0					8	5	3	0	0	0	0.018513	1	5853	5853		126.24	48.925	1	888090			14218	65	9177	9211	14431	14431					0.04603974674762412
GTASLAQVHK	10	Unmodified	_GTASLAQVHK_					0	0	0		ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant;nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2824401855469	2	506.282723	1010.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.327	1	19.327	18.827	19.827	0								0	0	0	1.8261E-05	1	6090	6090		159.28	52.268	1				14219	65	9177	9211	14432	14432					0.04603974674762412
GTASPSPTK	9	Unmodified	_GTASPSPTK_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2214050292969	2	423.2218	844.429047	-0.23635	-0.00010003	-0.18575	-7.8614E-05	-0.4221	-0.00017864	423.2218102850914	14.385	0.20352	14.385	14.234	14.437	0					7	4	2	0	0	0	0.25716	1	3710	3710		54.776	7.119	1	146530			14220	4095	9178	9212	14433	14433					0.0006093259238468818
GTATLYKLS	9	Unmodified	_GTATLYKLS_					0	0	0			REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.268310546875	2	477.26875	952.522947	0.0084676	4.0413E-06	-0.55598	-0.00026535	-0.54751	-0.00026131	477.268422237086	31.351	0.29225	31.351	31.276	31.568	0					16	12	2	0	0	0	0.24334	1	10066	10066		56.434	14.038	1	136340	+		14221	19842	9179	9213	14434	14434					0.04478651694671498
GTATLYKLS	9	Unmodified	_GTATLYKLS_					0	0	0			REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2685546875	2	477.26875	952.522947	0.39014	0.0001862	-0.72564	-0.00034633	-0.3355	-0.00016013	477.26840867492126	31.61	0.37992	31.61	31.531	31.911	0					24	9	3	0	0	0	0.11898	1	11521	11521		75.043	27.084	1	951720	+		14222	19842	9179	9213	14435	14435					0.04478651694671498
GTATLYKLS	9	Unmodified	_GTATLYKLS_					0	0	0			REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.26837158203125	2	477.26875	952.522947	-0.11766	-5.6155E-05	-0.56989	-0.00027199	-0.68755	-0.00032814	477.2683983527076	31.585	0.35313	31.585	31.524	31.878	0					16	7	3	0	0	0	0.11898	1	11932	11932		75.043	5.4157	1	682420	+		14223	19842	9179	9213	14436	14436					0.04478651694671498
GTATLYKLS	9	Unmodified	_GTATLYKLS_					0	0	0			REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2693176269531	2	477.26875	952.522947	-0.033137	-1.5815E-05	-0.27664	-0.00013203	-0.30978	-0.00014785	477.26863557615	31.411	0.14339	31.411	31.319	31.463	0					6	3	2	0	0	0	0.40353	1	10801	10801		41.427	4.2675	1	136360	+		14224	19842	9179	9213	14437	14437					0.04478651694671498
GTATLYKLS	9	Unmodified	_GTATLYKLS_					0	0	0			REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	REV__ENST00000507036.1_1_5:7867877-7868021:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2680358886719	2	477.26875	952.522947	-0.34688	-0.00016555	-0.069785	-3.3306E-05	-0.41666	-0.00019886	477.2685864594817	31.394	0.30183	31.394	31.303	31.604	0					10	7	2	0	0	0	0.46194	1	10816	10816		36.447	0.82846	1	67864	+		14225	19842	9179	9213	14438	14438					0.04478651694671498
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.23095703125	2	448.23131	894.448068	0.095546	4.2827E-05	-0.78871	-0.00035352	-0.69316	-0.0003107	448.2310022103122	18.532	0.18446	18.532	18.448	18.633	0					13	7	2	0	0	0	0.022525	1	4622	4622		117.81	38.098	1	707170			14226	7681	9180	9214	14439	14439					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2304992675781	2	448.23131	894.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.832	1	18.832	18.332	19.332	0								0	0	0	0.00049573	1	5579	5579		138.06	58.35	1				14227	7681	9180	9214	14440	14440					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.23114013671875	2	448.23131	894.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.513	1	18.513	18.013	19.013	0								0	0	0	0.018912	1	4848	4848		101.25	42.471	1				14228	7681	9180	9214	14441	14441					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2313537597656	2	448.23131	894.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.776	1	18.776	18.276	19.276	0								0	0	0	0.0026034	1	5823	5823		150.36	68.121	1				14229	7681	9180	9214	14442	14442					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2306823730469	2	448.23131	894.448068	0.5222	0.00023406	-0.96223	-0.0004313	-0.44003	-0.00019724	448.23085190601364	18.599	0.14696	18.599	18.52	18.667	0					7	4	2	0	0	0	0.10506	1	4875	4875		78.264	21.543	1	208350			14230	7681	9180	9214	14443	14443					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.23101806640625	2	448.23131	894.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.604	1	18.604	18.104	19.104	0								0	0	0	0.013195	1	4888	4888		163.15	58.404	1				14231	7681	9180	9214	14444	14444					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2310791015625	2	448.23131	894.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.592	1	18.592	18.092	19.092	0								0	0	0	0.0011674	1	4882	4882		126.24	49.468	1				14232	7681	9180	9214	14445	14445					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2305908203125	2	448.23131	894.448068	-0.4086	-0.00018315	-1.1076	-0.00049646	-1.5162	-0.00067961	448.2309203737676	18.727	0.39321	18.727	18.621	19.014	0					19	8	4	0	0	0	0.017421	1	5670	5670		126.24	48.925	1	1699100			14233	7681	9180	9214	14446	14446					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2303161621094	2	448.23131	894.448068	0.85702	0.00038415	-1.5098	-0.00067673	-0.65276	-0.00029259	448.23066356097655	18.76	0.54329	18.76	18.653	19.196	0					18	11	2	0	0	0	0.0097668	1	5663	5663		141.52	51.151	1	4307200			14234	7681	9180	9214	14447	14447					-0.0033785410821565165
GTATTMVSK	9	Unmodified	_GTATTMVSK_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.23114013671875	2	448.23131	894.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.768	1	18.768	18.268	19.268	0								0	0	0	0.0026034	1	5681	5681		150.36	65.446	1				14235	7681	9180	9214	14448	14448					-0.0033785410821565165
GTAVVGVVL	9	Unmodified	_GTAVVGVVL_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.7549133300781	2	407.755278	813.496004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.887	1	36.887	36.387	37.387	0								0	0	0	0.30835	1	14396	14396		33.516	1.5607	1				14236	7357	9181	9215	14449	14449					0.08179587874133176
GTAYGFFGK	9	Unmodified	_GTAYGFFGK_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2353210449219	2	474.23471	946.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.219	1	38.219	37.719	38.719	0								0	0	0	0.14033	1	14513	14513		62.107	19.711	1				14237	10867	9182	9216	14450	14450					-0.020501731653325805
GTAYGFFGK	9	Unmodified	_GTAYGFFGK_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2346496582031	2	474.23471	946.454868	0.6082	0.00028843	-1.0734	-0.00050904	-0.46519	-0.00022061	474.23413685189314	38.192	0.38074	38.192	38.012	38.393	0					31	13	3	0	0	0	0.07136	1	14959	14959		87.696	49.885	1	418230			14238	10867	9182	9216	14451	14451					-0.020501731653325805
GTAYGFFGK	9	Unmodified	_GTAYGFFGK_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2346496582031	2	474.23471	946.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.966	1	37.966	37.466	38.466	0								0	0	0	0.22284	1	13591	13591		47.657	19.775	1				14239	10867	9182	9216	14452	14452					-0.020501731653325805
GTAYGFFGK	9	Unmodified	_GTAYGFFGK_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.23431396484375	2	474.23471	946.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.952	1	37.952	37.452	38.452	0								0	0	0	0.2591	1	13584	13584		42.396	9.5837	1				14240	10867	9182	9216	14453	14453					-0.020501731653325805
GTAYGFFGK	9	Unmodified	_GTAYGFFGK_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2348937988281	2	474.23471	946.454868	0.69759	0.00033082	-0.59551	-0.00028241	0.10208	4.841E-05	474.23427873344144	38.156	0.24568	38.156	38.072	38.317	0					13	5	3	0	0	0	0.037569	1	14975	14975		101.6	46.824	1	397550			14241	10867	9182	9216	14454	14454					-0.020501731653325805
GTAYGFFGK	9	Unmodified	_GTAYGFFGK_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.234375	2	474.23471	946.454868	2.3588	0.0011186	-2.5224	-0.0011962	-0.16352	-7.7545E-05	474.233982496261	38.149	0.6217	38.149	38.005	38.627	0					24	13	4	0	0	0	0.037569	1	14967	14967		101.6	53.685	1	596350			14242	10867	9182	9216	14455	14455					-0.020501731653325805
GTAYIHGMK	9	Unmodified	_GTAYIHGMK_					0	0	0		ENSG00000000419|ENST00000371588|DPM1;ENST00000466152.5_1_20:49557422-49575060:-|nuORF	ENSG00000000419|ENST00000371588|DPM1	ENSG00000000419|ENST00000371588|DPM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2464599609375	2	489.247295	976.480036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.404	1	21.404	20.904	21.904	0								0	0	0	0.30504	1	6139	6139		34.173	5.023	1				14243	920	9183	9217	14456	14456					-0.009144416344042838
GTCAEKLKK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))AEKLKK_	GTC(1)AEKLKK		GTC(50)AEKLKK		0	1	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7876586914062	2	517.786784	1033.55902	-1.4378	-0.00074448	2.9017	0.0015025	1.4639	0.00075797	517.7884045501943	13.535	0.069002	13.535	13.493	13.562	0					5	3	2	0	0	0	0.30841	1	2741	2741		49.536	10.73	1	59510			14244	1572	9184	9218	14457	14457	65				0.043577855998591986
GTCAFSILFK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))AFSILFK_	GTC(1)AFSILFK		GTC(99)AFSILFK		0	1	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;GAPVD1|p.S186Ffs*2|1|0.33|ENSG00000165219|chr9:125302347-125302348|-/T|frameshift_variant	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.2975463867188	2	572.296985	1142.57942	1.6471	0.00094265	-0.26284	-0.00015042	1.3843	0.00079223	572.2970438324445	50.164	0.18683	50.164	50.049	50.235	0					15	9	3	0	0	0	0.08194	1	19804	19804		98.582	34.375	1	262500			14245	5776	9185	9219	14458	14458	244				0.013829562597038603
GTCASWRGK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))ASWRGK_	GTC(1)ASWRGK		GTC(120)ASWRGK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7462463378906	2	511.74545	1021.47635	-0.12893	-6.5977E-05	0.30827	0.00015775	0.17934	9.1777E-05	511.74568341781355	17.235	0.30426	17.235	17.165	17.469	0					22	10	4	0	0	0	0.023928	1	4061	4061		115.49	22.299	1	997970			14246	8070	9186	9220	14459	14459	352				-0.033531114082506974
GTCASWRGK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))ASWRGK_	GTC(1)ASWRGK		GTC(48)ASWRGK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.49932861328125	3	341.499392	1021.47635	0.67432	0.00023028	-1.252	-0.00042757	-0.5777	-0.00019729	341.4991091704609	17.543	0.20839	17.543	17.46	17.668	0					13	5	4	0	0	0	0.33044	1	4979	4979		47.657	13.485	1	1134400			14247	8070	9186	9220	14460	14460	352				-0.033531114082506974
GTCASWRGK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))ASWRGK_	GTC(1)ASWRGK		GTC(110)ASWRGK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.74554443359375	2	511.74545	1021.47635	-0.44469	-0.00022757	0.20457	0.00010469	-0.24012	-0.00012288	511.7457913304403	17.525	0.60413	17.525	17.334	17.939	0					22	12	4	0	0	0	0.02953	1	5229	5229		109.48	29.766	1	1636300			14248	8070	9186	9220	14461	14461	352				-0.033531114082506974
GTCASWRGK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))ASWRGK_	GTC(1)ASWRGK		GTC(100)ASWRGK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.74566650390625	2	511.74545	1021.47635	-1.7339	-0.00088734	1.8741	0.00095908	0.14019	7.1744E-05	511.74658443258943	17.331	0.2755	17.331	17.257	17.533	0					16	8	3	0	0	0	0.037924	1	4289	4289		101.25	29.957	1	568720			14249	8070	9186	9220	14462	14462	352				-0.033531114082506974
GTCASWRGK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))ASWRGK_	GTC(1)ASWRGK		GTC(77)ASWRGK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.4992980957031	3	341.499392	1021.47635	1.5542	0.00053076	-2.2828	-0.00077958	-0.72861	-0.00024882	341.49874586095444	17.472	0.51875	17.472	17.413	17.931	0					20	10	4	0	0	0	0.10915	1	5058	5058		77.318	17.199	1	1535800			14250	8070	9186	9220	14463	14463	352				-0.033531114082506974
GTCFGKFTK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))FGKFTK_	GTC(1)FGKFTK		GTC(64)FGKFTK		0	1	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2615356445312	2	523.260402	1044.50625	0.76585	0.00040074	2.6052	0.0013632	3.3711	0.001764	523.2619067213273	24.151	0.25656	24.151	24.052	24.309	0					19	8	3	0	0	0	0.18416	1	7098	7098		63.534	10.182	1	456960			14251	3800	9187	9221	14464	14464	166				-0.014221724629351229
GTCFGKFTK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))FGKFTK_	GTC(1)FGKFTK		GTC(53)FGKFTK		0	1	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.1759338378906	3	349.176027	1044.50625	0.49826	0.00017398	-0.92498	-0.00032298	-0.42672	-0.000149	349.17582713393045	24.445	0.53135	24.445	24.294	24.825	0					28	12	5	0	0	0	0.27123	1	8219	8219		53.089	20.338	1	2650400			14252	3800	9187	9221	14465	14465	166				-0.014221724629351229
GTCFGKFTK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))FGKFTK_	GTC(1)FGKFTK		GTC(96)FGKFTK		0	1	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2625732421875	2	523.260402	1044.50625	0.08858	4.635E-05	3.2865	0.0017197	3.375	0.001766	523.2621775522647	24.426	0.3576	24.426	24.34	24.698	0					25	8	5	0	0	0	0.047855	1	8220	8220		96.034	19.259	1	2407300			14253	3800	9187	9221	14466	14466	166				-0.014221724629351229
GTCFGKFTK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))FGKFTK_	GTC(1)FGKFTK		GTC(99)FGKFTK		0	1	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2680053710938	2	523.260402	1044.50625	0.48018	0.00025126	1.816	0.00095022	2.2961	0.0012015	523.261431494226	24.156	0.35283	24.156	24.089	24.442	0					23	11	3	0	0	0	0.04067	1	7350	7350		98.582	10.886	1	558650			14254	3800	9187	9221	14467	14467	166				-0.014221724629351229
GTCFGKFTK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))FGKFTK_	GTC(1)FGKFTK		GTC(96)FGKFTK		0	1	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2628173828125	2	523.260402	1044.50625	1.7925	0.00093796	0.67217	0.00035172	2.4647	0.0012897	523.2608027371888	24.402	0.66116	24.402	24.246	24.907	0					38	13	4	0	0	0	0.047855	1	8527	8527		96.034	26.406	1	4129400			14255	3800	9187	9221	14468	14468	166				-0.014221724629351229
GTCFGKFTK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))FGKFTK_	GTC(1)FGKFTK		GTC(88)FGKFTK		0	1	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2615356445312	2	523.260402	1044.50625	3.4152	0.001787	-1.024	-0.00053581	2.3912	0.0012512	523.2600097843226	24.355	0.65065	24.355	24.295	24.946	0					25	13	3	0	0	0	0.070005	1	8401	8401		88.177	40.261	1	4311100			14256	3800	9187	9221	14469	14469	166				-0.014221724629351229
GTCGKAFSR	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKAFSR_	GTC(1)GKAFSR		GTC(72)GKAFSR		0	1	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2393798828125	2	492.240001	982.465449	-0.073516	-3.6188E-05	-0.77697	-0.00038246	-0.85049	-0.00041864	492.2398354535209	15.876	0.11422	15.876	15.804	15.918	0					11	5	3	0	0	0	0.13109	1	3523	3523		72.243	15.522	1	176240			14257	3357	9188	9222	14470	14470	134				-0.02648513782548889
GTCGKAFSR	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKAFSR_	GTC(1)GKAFSR		GTC(130)GKAFSR		0	1	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2395935058594	2	492.240001	982.465449	-0.54595	-0.00026874	-0.38728	-0.00019064	-0.93323	-0.00045937	492.24005098762075	16.188	0.22239	16.188	16.096	16.318	0					15	5	5	0	0	0	0.012936	1	4324	4324		134.77	60.511	1	1468900			14258	3357	9188	9222	14471	14471	134				-0.02648513782548889
GTCGKAFSR	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKAFSR_	GTC(1)GKAFSR		GTC(55)GKAFSR		0	1	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.24005126953125	2	492.240001	982.465449	-1.4451	-0.00071135	1.5085	0.00074254	0.063363	3.119E-05	492.24083841388176	15.884	0.099064	15.884	15.829	15.928	0					7	4	2	0	0	0	0.25761	1	3701	3701		54.722	20.55	1	205170			14259	3357	9188	9222	14472	14472	134				-0.02648513782548889
GTCGKAFSR	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKAFSR_	GTC(1)GKAFSR		GTC(99)GKAFSR		0	1	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.239501953125	2	492.240001	982.465449	0.58817	0.00028952	-1.8501	-0.00091067	-1.2619	-0.00062115	492.239320074637	16.12	0.16674	16.12	16.013	16.179	0					9	3	4	0	0	0	0.040209	1	4554	4554		99.013	36.906	1	751130			14260	3357	9188	9222	14473	14473	134				-0.02648513782548889
GTCGKAFSR	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKAFSR_	GTC(1)GKAFSR		GTC(110)GKAFSR		0	1	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2397155761719	2	492.240001	982.465449	-0.73761	-0.00036308	0.66807	0.00032885	-0.069544	-3.4232E-05	492.2403987034185	16.154	0.26684	16.154	16.047	16.313	0					11	5	3	0	0	0	0.024312	1	4550	4550		114.86	32.618	1	912770			14261	3357	9188	9222	14474	14474	134				-0.02648513782548889
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(160)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7855834960938	2	525.784241	1049.55393	1.3614	0.00071582	-0.52255	-0.00027475	0.83887	0.00044107	525.784053261209	18.431	0.13496	18.431	18.376	18.511	0					14	5	3	0	0	0	0.0060268	1	4580	4580		162.64	58.622	1	663370			14262	3069	9189	9223	14475	14475	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(150)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7846069335938	2	525.784241	1049.55393	1.9566	0.0010288	-1.8039	-0.00094846	0.15275	8.0313E-05	525.7834048606086	18.764	0.17442	18.764	18.641	18.816	0					16	4	5	0	0	0	0.0083517	1	5539	5539		150.81	35.916	1	7404400			14263	3069	9189	9223	14476	14476	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(110)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7842407226562	2	525.784241	1049.55393	0.52655	0.00027685	-0.20848	-0.00010961	0.31808	0.00016724	525.7841692345144	18.444	0.14327	18.444	18.36	18.503	0					8	5	2	0	0	0	0.048505	1	4810	4810		109.83	26.183	1	697870			14264	3069	9189	9223	14477	14477	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(56)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.8585510253906	3	350.858586	1049.55393	-0.82888	-0.00029082	0.59031	0.00020711	-0.23857	-8.3704E-05	350.85888242325154	18.444	0.11711	18.444	18.386	18.503	0					13	4	4	0	0	0	0.40476	1	4811	4811		55.721	23.687	1	491580			14265	3069	9189	9223	14478	14478	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(160)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.78466796875	2	525.784241	1049.55393	0.97854	0.0005145	1.2871	0.00067671	2.2656	0.0011912	525.7849768257206	18.669	0.38928	18.669	18.611	19.001	0					14	8	2	0	0	0	0.0060268	1	5779	5779		162.64	50.529	1	3216800			14266	3069	9189	9223	14479	14479	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(160)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7843627929688	2	525.784241	1049.55393	1.7708	0.00093107	-1.8476	-0.00097146	-0.076814	-4.0388E-05	525.7832088901774	18.706	0.2173	18.706	18.544	18.761	0					6	3	2	0	0	0	0.0060268	1	5776	5776		162.64	47.741	1	3209600			14267	3069	9189	9223	14480	14480	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(100)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7852172851562	2	525.784241	1049.55393	1.6647	0.00087525	-0.84001	-0.00044166	0.82466	0.00043359	525.7839310729537	18.521	0.15113	18.521	18.415	18.566	0					11	4	4	0	0	0	0.071575	1	4845	4845		102.06	16.901	1	481410			14268	3069	9189	9223	14481	14481	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(110)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7845458984375	2	525.784241	1049.55393	1.1861	0.00062361	-0.61566	-0.00032371	0.5704	0.00029991	525.7840345548636	18.517	0.15232	18.517	18.439	18.591	0					12	4	4	0	0	0	0.034592	1	4840	4840		114.86	47.365	1	789930			14269	3069	9189	9223	14482	14482	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(150)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7843017578125	2	525.784241	1049.55393	0.5882	0.00030927	1.1339	0.00059617	1.7221	0.00090544	525.7851629434423	18.677	0.49086	18.677	18.572	19.063	0					22	10	4	0	0	0	0.0083517	1	5645	5645		150.81	35.916	1	5945500			14270	3069	9189	9223	14483	14483	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(150)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7844848632812	2	525.784241	1049.55393	1.6269	0.00085541	-0.77951	-0.00040985	0.84741	0.00044556	525.783847975138	18.661	0.29265	18.661	18.605	18.897	0					10	6	2	0	0	0	0.0088982	1	5637	5637		147.73	38.254	1	3900600			14271	3069	9189	9223	14484	14484	116				0.03113481737273105
GTCGKSLISK	10	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))GKSLISK_	GTC(1)GKSLISK		GTC(85)GKSLISK		0	1	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.85858154296875	3	350.858586	1049.55393	1.4622	0.00051301	-1.8873	-0.00066219	-0.42518	-0.00014918	350.8580512993194	18.661	0.16319	18.661	18.605	18.768	0					9	3	4	0	0	0	0.16075	1	5639	5639		84.817	24.887	1	1594000			14272	3069	9189	9223	14485	14485	116				0.03113481737273105
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(110)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.773193359375	2	497.773145	993.531738	0.19154	9.5344E-05	0.2031	0.0001011	0.39464	0.00019644	497.7733240341505	36.551	0.28622	36.551	36.464	36.751	0					35	15	3	0	0	0	0.028876	1	11980	11980		110.12	51.338	1	433890			14273	7601	9190	9224	14486	14486	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(130)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.77325439453125	2	497.773145	993.531738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.805	1	36.805	36.305	37.305	0								0	0	0	0.00014776	1	13909	13909		134.81	73.839	1				14274	7601	9190	9224	14487	14487	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(74)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7729797363281	2	497.773145	993.531738	3.3906	0.0016877	-2.5677	-0.0012781	0.82289	0.00040961	497.7713519387968	36.609	0.12941	36.609	36.559	36.688	0					9	6	2	0	0	0	0.12239	1	12395	12395		74.255	35.449	1	51493			14275	7601	9190	9224	14488	14488	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(99)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7735900878906	2	497.773145	993.531738	-1.127	-0.000561	1.0453	0.00052034	-0.081672	-4.0654E-05	497.7735609376631	36.612	0.26754	36.612	36.522	36.789	0					25	14	2	0	0	0	0.0406	1	12387	12387		98.629	45.278	1	359590			14276	7601	9190	9224	14489	14489	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(110)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2752990722656	2	497.773145	993.531738	-0.026122	-1.3003E-05	0.49364	0.00024572	0.46752	0.00023272	497.7734325462651	36.843	0.50399	36.843	36.572	37.076	0					23	15	2	0	0	0	0.028876	1	14344	14344		110.12	51.338	1	372570			14277	7601	9190	9224	14490	14490	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(130)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7728271484375	2	497.773145	993.531738	0.80259	0.00039951	-1.7324	-0.00086233	-0.92978	-0.00046282	497.7724883439203	36.834	0.49495	36.834	36.705	37.2	0					33	15	3	0	0	0	0.012915	1	14348	14348		134.81	70.603	1	1999200			14278	7601	9190	9224	14491	14491	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(120)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.77325439453125	2	497.773145	993.531738	-0.16842	-8.3837E-05	0.7143	0.00035556	0.54588	0.00027172	497.7734467325137	36.605	0.31871	36.605	36.469	36.788	0					23	15	2	0	0	0	0.019882	1	13096	13096		122.18	61.204	1	267360			14279	7601	9190	9224	14492	14492	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(93)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7730712890625	2	497.773145	993.531738	0.17884	8.9022E-05	-0.29147	-0.00014509	-0.11263	-5.6065E-05	497.7730888520831	36.6	0.30271	36.6	36.498	36.801	0					33	14	3	0	0	0	0.055856	1	13086	13086		93.195	29.889	1	469020			14280	7601	9190	9224	14493	14493	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(150)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7731018066406	2	497.773145	993.531738	-0.71969	-0.00035824	0.31798	0.00015828	-0.40171	-0.00019996	497.7734529259728	36.741	0.7065	36.741	36.529	37.235	0					34	14	4	0	0	0	0.0073253	1	14312	14312		148.04	74.068	1	2135700			14281	7601	9190	9224	14494	14494	325				0.03471302059494974
GTCLFVAVK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LFVAVK_	GTC(1)LFVAVK		GTC(150)LFVAVK		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.77288818359375	2	497.773145	993.531738	1.0138	0.00050465	-1.451	-0.00072228	-0.4372	-0.00021763	497.77242966651056	36.769	0.85812	36.769	36.313	37.171	0					39	17	4	0	0	0	0.0073253	1	14305	14305		148.04	63.127	1	3337200			14282	7601	9190	9224	14495	14495	325				0.03471302059494974
GTCLLIANK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LLIANK_	GTC(1)LLIANK		GTC(120)LLIANK		0	1	0		CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.27569580078125	2	495.276052	988.537551	-0.064045	-3.172E-05	-0.38256	-0.00018947	-0.4466	-0.00022119	495.27577796166946	30.106	0.2432	30.106	29.949	30.193	0					19	9	3	0	0	0	0.019882	1	9554	9554		122.18	47.921	1	571470			14283	374	9191	9225	14496	14496	14				0.042824005711622704
GTCLLIANK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LLIANK_	GTC(1)LLIANK		GTC(120)LLIANK		0	1	0		CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.27593994140625	2	495.276052	988.537551	-0.40247	-0.00019933	-0.42008	-0.00020805	-0.82254	-0.00040739	495.2759603278141	30.406	0.292	30.406	30.195	30.487	0					17	7	4	0	0	0	0.021961	1	10945	10945		118.74	43.7	1	2567700			14284	374	9191	9225	14497	14497	14				0.042824005711622704
GTCLLIANK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LLIANK_	GTC(1)LLIANK		GTC(120)LLIANK		0	1	0		CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2757873535156	2	495.276052	988.537551	-1.2384	-0.00061335	0.69419	0.00034382	-0.54422	-0.00026954	495.27641434961146	30.145	0.26891	30.145	29.984	30.252	0					24	10	3	0	0	0	0.019882	1	9867	9867		122.18	44.858	1	696560			14285	374	9191	9225	14498	14498	14				0.042824005711622704
GTCLLIANK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LLIANK_	GTC(1)LLIANK		GTC(170)LLIANK		0	1	0		CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2759704589844	2	495.276052	988.537551	0.70455	0.00034894	-1.1863	-0.00058756	-0.48179	-0.00023862	495.2755384100641	30.392	0.28454	30.392	30.179	30.464	0					19	6	4	0	0	0	0.0025305	1	11348	11348		171.38	64.377	1	3452900			14286	374	9191	9225	14499	14499	14				0.042824005711622704
GTCLLIANK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LLIANK_	GTC(1)LLIANK		GTC(150)LLIANK		0	1	0		CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2756652832031	2	495.276052	988.537551	0.091424	4.528E-05	-1.0507	-0.00052038	-0.95926	-0.0004751	495.2757432176154	30.175	0.38114	30.175	29.971	30.352	0					20	9	3	0	0	0	0.0073253	1	10241	10241		148.04	11.775	1	331980			14287	374	9191	9225	14500	14500	14				0.042824005711622704
GTCLLIANK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))LLIANK_	GTC(1)LLIANK		GTC(130)LLIANK		0	1	0		CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2760009765625	2	495.276052	988.537551	-2.4384	-0.0012077	1.9748	0.00097809	-0.46353	-0.00022958	495.2770529231663	30.183	0.24805	30.183	30.003	30.251	0					16	6	3	0	0	0	0.014688	1	10233	10233		131.03	29.431	1	720820			14288	374	9191	9225	14501	14501	14				0.042824005711622704
GTCMAQAKR	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))MAQAKR_	GTC(1)MAQAKR		GTC(41)MAQAKR		0	1	0			REV__ENSG00000189280|ENST00000338513|GJB5	REV__ENSG00000189280|ENST00000338513|GJB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.4991455078125	3	341.500516	1021.47972	-0.057162	-1.9521E-05	-3.4778	-0.0011877	-3.5349	-0.0012072	341.49934555506934	17.32	0.19234	17.32	17.227	17.42	0					6	5	2	0	0	0	0.41113	1	4297	4297		40.778	7.9657	1	64902	+		14289	17216	9192	9226	14502	14502	615				-0.03016184625914775
GTCQDCKVQG	10	Unmodified	_GTCQDCKVQG_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33;USP33|p.I935Lfs*3|1|0.1|ENSG00000077254|chr1:77697343-77697343|T/-|frameshift_variant;ENST00000528150.1_1_1:78206598-78225465:-|nuORF	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7216186523438	2	519.720784	1037.42701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.588	1	15.588	15.088	16.088	0								0	0	0	0.4201	1	3419	3419		17.468	1.8262	1				14290	1579	9193	9227	14503	14503					-0.0902018747940474
GTCRDFILK	9	Carbamidomethyl (C)	_GTC(Carbamidomethyl (C))RDFILK_	GTC(1)RDFILK		GTC(88)RDFILK		0	1	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000473258.1_1_2:238233419-238234407:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	370.53045654296875	3	370.530581	1108.56991	0.25917	9.6031E-05	-0.59628	-0.00022094	-0.33711	-0.00012491	370.5303270824342	28.199	0.39404	28.199	28.055	28.449	0					13	8	2	0	0	0	0.070005	1	10290	10290		88.177	10.644	1	407460			14291	5547	9194	9228	14504	14504	229				0.01997187974143344
GTDEHVVCK	9	Unmodified	_GTDEHVVCK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2323913574219	2	494.231842	986.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.403	1	16.403	15.903	16.903	0								0	0	0	0.018211	1	3724	3724		101.6	35.171	1				14292	11751	9195	9229	14505	14505					-0.04463639739299197
GTDEHVVCK	9	Unmodified	_GTDEHVVCK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.23175048828125	2	494.231842	986.44913	0.761	0.00037611	-0.86041	-0.00042524	-0.099401	-4.9127E-05	494.23142305463546	16.666	0.29414	16.666	16.576	16.87	0					12	7	2	0	0	0	0.021961	1	4573	4573		118.74	56.636	1	1458400			14293	11751	9195	9229	14506	14506					-0.04463639739299197
GTDEHVVCK	9	Unmodified	_GTDEHVVCK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.23162841796875	2	494.231842	986.44913	-1.2689	-0.00062714	0.68189	0.00033701	-0.58703	-0.00029013	494.23230593920556	16.401	0.13658	16.401	16.346	16.483	0					10	4	3	0	0	0	0.012915	1	3917	3917		134.81	70.603	1	372850			14294	11751	9195	9229	14507	14507					-0.04463639739299197
GTDEHVVCK	9	Unmodified	_GTDEHVVCK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.23162841796875	2	494.231842	986.44913	0.66472	0.00032853	-1.1466	-0.0005667	-0.48191	-0.00023818	494.23152497943784	16.621	0.44905	16.621	16.515	16.964	0					17	9	4	0	0	0	5.1026E-05	1	4773	4773		195.81	87.726	1	2624000			14295	11751	9195	9229	14508	14508					-0.04463639739299197
GTDEHVVCK	9	Unmodified	_GTDEHVVCK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.23199462890625	2	494.231842	986.44913	0.04511	2.2295E-05	0.18046	8.9187E-05	0.22556	0.00011148	494.2318075706047	16.434	0.33949	16.434	16.334	16.673	0					14	9	3	0	0	0	0.021961	1	3892	3892		118.74	54.536	1	143200			14296	11751	9195	9229	14509	14509					-0.04463639739299197
GTDEHVVCK	9	Unmodified	_GTDEHVVCK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2315979003906	2	494.231842	986.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.614	1	16.614	16.114	17.114	0								0	0	0	0.0048181	1	4633	4633		153.04	78.781	1				14297	11751	9195	9229	14510	14510					-0.04463639739299197
GTDEHVVCK	9	Carbamidomethyl (C)	_GTDEHVVC(Carbamidomethyl (C))K_	GTDEHVVC(1)K		GTDEHVVC(110)K		0	1	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.742919921875	2	522.742573	1043.47059	0.086408	4.5169E-05	0.32719	0.00017103	0.41359	0.0002162	522.7428743900807	15.81	0.13384	15.81	15.763	15.897	0					8	3	3	0	0	0	0.028876	1	4167	4167		110.12	32.802	1	820510			14298	11751	9195	9230	14511	14511	469				-0.04940254710595582
GTDEHVVCK	9	Carbamidomethyl (C)	_GTDEHVVC(Carbamidomethyl (C))K_	GTDEHVVC(1)K		GTDEHVVC(85)K		0	1	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7424926757812	2	522.742573	1043.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.572	1	15.572	15.072	16.072	0								0	0	0	0.0537	1	3580	3580		85.161	40.784	1				14299	11751	9195	9230	14512	14512	469				-0.04940254710595582
GTDEHVVCK	9	Carbamidomethyl (C)	_GTDEHVVC(Carbamidomethyl (C))K_	GTDEHVVC(1)K		GTDEHVVC(88)K		0	1	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.742919921875	2	522.742573	1043.47059	1.7975	0.00093964	-1.3729	-0.00071766	0.42465	0.00022198	522.7419672543406	15.777	0.16101	15.777	15.719	15.88	0					7	3	3	0	0	0	0.07136	1	4395	4395		87.696	10.922	1	1396500			14300	11751	9195	9230	14513	14513	469				-0.04940254710595582
GTDEHVVCK	9	Carbamidomethyl (C)	_GTDEHVVC(Carbamidomethyl (C))K_	GTDEHVVC(1)K		GTDEHVVC(110)K		0	1	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7439575195312	2	522.742573	1043.47059	-1.2991	-0.00067911	2.1567	0.0011274	0.85759	0.0004483	522.7438770177693	15.567	0.12318	15.567	15.496	15.619	0					7	4	2	0	0	0	0.025517	1	3514	3514		113.41	60.06	1	103470			14301	11751	9195	9230	14514	14514	469				-0.04940254710595582
GTDEHVVCK	9	Carbamidomethyl (C)	_GTDEHVVC(Carbamidomethyl (C))K_	GTDEHVVC(1)K		GTDEHVVC(140)K		0	1	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.742919921875	2	522.742573	1043.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.798	1	15.798	15.298	16.298	0								0	0	0	0.001119	1	4244	4244		143.89	69.632	1				14302	11751	9195	9230	14515	14515	469				-0.04940254710595582
GTDEPIFGK	9	Unmodified	_GTDEPIFGK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2414245605469	2	482.242732	962.470912	0.5603	0.0002702	-3.1396	-0.001514	-2.5793	-0.0012438	482.2413028498507	30.616	0.27927	30.616	30.526	30.805	0					11	6	2	0	0	0	0.21263	1	11069	11069		60.118	17.254	1	421860			14303	1186	9196	9231	14516	14516					-0.011825117190710444
GTDEPIFGK	9	Unmodified	_GTDEPIFGK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.23468017578125	2	482.242732	962.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.563	1	30.563	30.063	31.063	0								0	0	0	0.14033	1	11330	11330		62.107	12.666	1				14304	1186	9196	9231	14517	14517					-0.011825117190710444
GTDEPIFGK	9	Unmodified	_GTDEPIFGK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2415771484375	2	482.242732	962.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.613	1	30.613	30.113	31.113	0								0	0	0	0.14881	1	11353	11353		60.118	14.146	1				14305	1186	9196	9231	14518	14518					-0.011825117190710444
GTDEPIFGK	9	Unmodified	_GTDEPIFGK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2419128417969	2	482.242732	962.470912	0.89853	0.00043331	-3.1524	-0.0015202	-2.2538	-0.0010869	482.24119851476144	30.569	0.30632	30.569	30.474	30.78	0					9	6	2	0	0	0	0.1424	1	11344	11344		69.628	16.276	1	460600			14306	1186	9196	9231	14519	14519					-0.011825117190710444
GTDGVGTKLK	10	Unmodified	_GTDGVGTKLK_					0	0	0		ENST00000460305.1_1_21:34892913-34894585:-|nuORF;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART	ENST00000460305.1_1_21:34892913-34894585:-|nuORF	ENST00000460305.1_1_21:34892913-34894585:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2821350097656	2	488.277106	974.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.212	1	18.212	17.712	18.712	0								0	0	0	0.010524	1	5551	5551		101.46	18.709	1				14307	5297	9197	9232	14520	14520					0.05137152580618931
GTDKLWAGL	9	Unmodified	_GTDKLWAGL_					0	0	0		NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant;nc|ENSG00000179846|Q17RQ9|NKPD1;ENSG00000179846|ENST00000686631|NKPD1	NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant	NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.76104736328125	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.954	1	32.954	32.454	33.454	0								0	0	0	0.14033	1	11516	11516		62.107	7.3851	1				14308	6782	9198	9233	14521	14521					0.026257848974637454
GTDLEAVAK	9	Unmodified	_GTDLEAVAK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2424621582031	2	452.242732	902.470912	-0.1139	-5.1512E-05	0.23716	0.00010725	0.12325	5.574E-05	452.2427007392262	25.561	0.2619	25.561	25.459	25.721	0					6	5	2	0	0	0	0.12834	1	9100	9100		72.879	8.672	1	121340			14309	331	9199	9234	14522	14522					0.015774882809068913
GTDLEAVAK	9	Unmodified	_GTDLEAVAK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.24261474609375	2	452.242732	902.470912	-0.40995	-0.0001854	1.34	0.00060602	0.93007	0.00042062	452.24286192218705	25.528	0.27025	25.528	25.414	25.684	0					8	5	2	0	0	0	0.13726	1	8962	8962		70.816	6.6089	1	209380			14310	331	9199	9234	14523	14523					0.015774882809068913
GTDLFPYEVS	10	Unmodified	_GTDLFPYEVS_					0	0	0		ENST00000583137.1_1_18:9708365-9723638:+|nuORF	ENST00000583137.1_1_18:9708365-9723638:+|nuORF	ENST00000583137.1_1_18:9708365-9723638:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5137939453125	3	376.513362	1126.51826	0.70837	0.00026671	0.20867	7.8568E-05	0.91705	0.00034528	376.5134060215417	30.433	1.1939	30.433	30.277	31.471	0					49	24	4	0	0	0	0.65213	1	11255	11255		32.751	6.6872	1	820800			14311	10880	9200	9235	14524	14524					-0.03994277238757604
GTDLYRGEKM	10	Unmodified	_GTDLYRGEKM_					0	0	0		ENSG00000138433|ENST00000342016|CIR1	ENSG00000138433|ENST00000342016|CIR1	ENSG00000138433|ENST00000342016|CIR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.52685546875	3	390.525496	1168.55466	0.14398	5.6228E-05	2.1886	0.00085471	2.3326	0.00091094	390.5267496006885	14.776	0.11666	14.776	14.697	14.813	0					4	2	2	0	0	0	0.61187	1	3911	3911		37.508	5.8739	1	43204			14312	4259	9201	9236	14525	14525					-0.022877236136991996
GTDMPAAKK	9	Unmodified	_GTDMPAAKK_					0	0	0		EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7388916015625	2	459.739302	917.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.934	1	14.934	14.434	15.434	0								0	0	0	0.24724	1	3319	3319		44.117	5.3107	1				14313	882	9202	9237	14526	14526					0.0020185212868000235
GTDRKLSPLLS	11	Unmodified	_GTDRKLSPLLS_					0	0	0		ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.23089599609375	3	396.231189	1185.67174	-0.068899	-2.73E-05	-0.21703	-8.5994E-05	-0.28593	-0.00011329	396.2311779996088	16.186	0.17272	16.186	16.12	16.292	0					20	8	3	0	0	0	0.6208	1	3638	3638		35.178	1.0917	1	223340			14314	5355	9203	9238	14527	14527					0.086327575975929
GTDRKLSPLLS	11	Unmodified	_GTDRKLSPLLS_					0	0	0		ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	396.56524658203125	3	396.231189	1185.67174	-1.2823	-0.0005081	1.7361	0.0006879	0.45377	0.0001798	396.23179702121837	16.211	0.17452	16.211	16.13	16.304	0					14	6	3	0	0	0	0.36734	1	3842	3842		55.084	8.6271	1	94610			14315	5355	9203	9238	14528	14528					0.086327575975929
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.5270080566406	3	377.192734	1128.55637	0.51368	0.00019376	-0.42631	-0.0001608	0.08737	3.2955E-05	377.1924650239623	26.571	0.15125	26.571	26.483	26.634	0					9	5	2	0	0	0	0.58308	1	8083	8083		55.721	28.674	1	96639			14316	1996	9204	9239	14529	14529					-0.002763465334282955
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.2855834960938	2	565.285463	1128.55637	0.13669	7.7266E-05	2.3452	0.0013257	2.4819	0.001403	565.2866395014711	26.565	0.14816	26.565	26.461	26.609	0					14	5	3	0	0	0	0.35046	1	8357	8357		61.691	0.71934	1	366230			14317	1996	9204	9239	14530	14530					-0.002763465334282955
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.285888671875	2	565.285463	1128.55637	0.81846	0.00046267	0.27203	0.00015377	1.0905	0.00061644	565.2855359121268	26.644	0.10039	26.644	26.552	26.653	0					6	2	3	0	0	0	0.41055	1	8599	8599		55.084	5.6424	1	289590			14318	1996	9204	9239	14531	14531					-0.002763465334282955
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.192626953125	3	377.192734	1128.55637	-0.12824	-4.8372E-05	-0.059198	-2.2329E-05	-0.18744	-7.0701E-05	377.1927657032439	26.628	0.10039	26.628	26.552	26.653	0					4	2	2	0	0	0	0.68194	1	8600	8600		35.496	14.658	1	200530			14319	1996	9204	9239	14532	14532					-0.002763465334282955
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.1927490234375	3	377.192734	1128.55637	0.69787	0.00026323	-0.24047	-9.0703E-05	0.4574	0.00017253	377.19262236312375	26.754	0.16835	26.754	26.637	26.805	0					10	3	4	0	0	0	0.5276	1	9497	9497		46.955	15.321	1	2497000			14320	1996	9204	9239	14533	14533					-0.002763465334282955
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.1927185058594	3	377.192734	1128.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.758	1	26.758	26.258	27.258	0								0	0	0	0.27346	1	9492	9492		59.265	12.808	1				14321	1996	9204	9239	14534	14534					-0.002763465334282955
GTDSGSVLK	9	Unmodified	_GTDSGSVLK_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.2267150878906	2	432.227082	862.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.615	1	19.615	19.115	20.115	0								0	0	0	0.082437	1	6231	6231		76.774	7.9873	1				14322	1036	9205	9240	14535	14535					0.0028891524680147995
GTDSHLVVK	9	Unmodified	_GTDSHLVVK_					0	0	0		ENST00000544958.5_1_11:72404190-72406109:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1	ENST00000544958.5_1_11:72404190-72406109:-|nuORF	ENST00000544958.5_1_11:72404190-72406109:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.26385498046875	2	478.263999	954.513445	0.65215	0.0003119	-0.88628	-0.00042387	-0.23413	-0.00011197	478.26354081476927	19.172	0.26322	19.172	18.967	19.231	0					8	5	3	0	0	0	0.1424	1	6030	6030		69.628	27.231	1	854550			14323	7152	9206	9241	14536	14536					0.034368834091424105
GTDVASFVK	9	Unmodified	_GTDVASFVK_					0	0	0		ENST00000592348.1_1_17:67532232-67537891:+|nuORF;nc|ENSG00000108984|P52564-2|MAP2K6;ENSG00000108984|ENST00000590474|MAP2K6	ENST00000592348.1_1_17:67532232-67537891:+|nuORF	ENST00000592348.1_1_17:67532232-67537891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2450866699219	2	462.245275	922.475997	0.80077	0.00037015	-0.8896	-0.00041121	-0.088834	-4.1063E-05	462.2448651811882	32.398	0.57262	32.398	32.051	32.623	0					19	11	3	0	0	0	0.085655	1	12209	12209		82.75	29.399	1	319010			14324	2559	9207	9242	14537	14537					0.011657921435244134
GTDVGTVLK	9	Unmodified	_GTDVGTVLK_					0	0	0		ENST00000419007.5_1_3:50311763-50312407:+|nuORF;ENST00000456210.5_1_3:50311877-50313205:+|nuORF;SEMA3B|p.R595Afs*16|1|0.43|ENSG00000012171|chr3:50275779-50275779|C/-|frameshift_variant;nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENSG00000075213|ENST00000265362|SEMA3A	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2532043457031	2	445.2531	888.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.168	1	27.168	26.668	27.668	0								0	0	0	0.088368	1	8344	8344		75.043	16.261	1				14325	1055	9208	9243	14538	14538					0.042940786605640824
GTDVGTVLK	9	Unmodified	_GTDVGTVLK_					0	0	0		ENST00000419007.5_1_3:50311763-50312407:+|nuORF;ENST00000456210.5_1_3:50311877-50313205:+|nuORF;SEMA3B|p.R595Afs*16|1|0.43|ENSG00000012171|chr3:50275779-50275779|C/-|frameshift_variant;nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENSG00000075213|ENST00000265362|SEMA3A	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2531433105469	2	445.2531	888.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.183	1	27.183	26.683	27.683	0								0	0	0	0.13425	1	8634	8634		63.534	3.4156	1				14326	1055	9208	9243	14539	14539					0.042940786605640824
GTDVGTVLK	9	Unmodified	_GTDVGTVLK_					0	0	0		ENST00000419007.5_1_3:50311763-50312407:+|nuORF;ENST00000456210.5_1_3:50311877-50313205:+|nuORF;SEMA3B|p.R595Afs*16|1|0.43|ENSG00000012171|chr3:50275779-50275779|C/-|frameshift_variant;nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENSG00000075213|ENST00000265362|SEMA3A	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.253173828125	2	445.2531	888.491647	-0.46554	-0.00020728	0.7439	0.00033122	0.27835	0.00012394	445.2533283206561	27.21	0.17761	27.21	27.129	27.306	0					8	4	2	0	0	0	0.070005	1	8884	8884		88.177	22.712	1	104000			14327	1055	9208	9243	14540	14540					0.042940786605640824
GTDVIALTK	9	Unmodified	_GTDVIALTK_					0	0	0		ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2688293457031	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.117	1	31.117	30.617	31.617	0								0	0	0	0.23111	1	9977	9977		46.457	5.0302	1				14328	5882	9209	9244	14541	14541					0.06134651694662807
GTEEAPKVFK	10	Unmodified	_GTEEAPKVFK_					0	0	0		nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B;TMEM126B|p.N60Kfs*3|1|0.37|ENSG00000171204|chr11:85631777-85631778|-/A|frameshift_variant;nc|ENSG00000171204|Q8IUX1-4|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.2984619140625	2	553.298039	1104.58152	0.62409	0.00034531	0.79173	0.00043806	1.4158	0.00078337	553.2985413129771	23.391	1.0879	23.391	22.918	24.006	0					45	25	3	0	0	0	0.0077643	1	7748	7748		154.12	58.303	1	2879900			14329	6282	9210	9245	14542	14542					0.03341708269135779
GTEFGGSIYQK	11	Unmodified	_GTEFGGSIYQK_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000489906.5_1_5:133308464-133311792:-|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000213585|ENST00000265333|VDAC1;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	593.7908935546875	2	593.790578	1185.5666	0.12959	7.6948E-05	-0.12208	-7.2492E-05	0.0075044	4.4561E-06	593.7904816219528	30.924	0.45588	30.924	30.82	31.276	0					47	18	4	0	0	0	0.27742	1	9875	9875		65.157	25.904	1	2464000			14330	1604	9211	9246	14543	14543					-0.018757835988935767
GTEFGGSIYQK	11	Unmodified	_GTEFGGSIYQK_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000489906.5_1_5:133308464-133311792:-|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000213585|ENST00000265333|VDAC1;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.7909545898438	2	593.790578	1185.5666	0.28503	0.00016925	-0.1409	-8.3663E-05	0.14413	8.5582E-05	593.7904587942957	31.165	0.75315	31.165	30.982	31.735	0					42	18	5	0	0	0	9.1445E-06	1	11303	11303		178.55	85.352	1	11514000			14331	1604	9211	9246	14544	14544					-0.018757835988935767
GTEFGGSIYQK	11	Unmodified	_GTEFGGSIYQK_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000489906.5_1_5:133308464-133311792:-|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000213585|ENST00000265333|VDAC1;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.7907104492188	2	593.790578	1185.5666	0.18006	0.00010692	0.015455	9.177E-06	0.19552	0.0001161	593.7905197832262	30.962	0.36807	30.962	30.857	31.225	0					36	13	4	0	0	0	7.2693E-05	1	10192	10192		148.69	86.583	1	1310900			14332	1604	9211	9246	14545	14545					-0.018757835988935767
GTEFGGSIYQK	11	Unmodified	_GTEFGGSIYQK_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000489906.5_1_5:133308464-133311792:-|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000213585|ENST00000265333|VDAC1;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.7909545898438	2	593.790578	1185.5666	0.010416	6.1849E-06	-0.012768	-7.5816E-06	-0.0023523	-1.3968E-06	593.7905863790095	31.182	0.78261	31.182	31.061	31.844	0					40	17	4	0	0	0	2.9096E-05	2	11714	11714;11877		169.65	76.457	1	7060800			14333	1604	9211	9246	14546;14547	14546					-0.018757835988935767
GTEVQLTEL	9	Unmodified	_GTEVQLTEL_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7928161621094	2	495.261122	988.507691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.285	1	16.285	15.785	16.785	0								0	0	0	0.23445	1	4623	4623		45.972	3.5761	1			+	14334	645	9212	9247	14548	14548					0.012977401068042127
GTFDNAETKK	10	Unmodified	_GTFDNAETKK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.775146484375	2	555.774928	1109.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.322	1	17.322	16.822	17.822	0								0	0	0	0.2634	1	5124	5124		56.434	1.6575	1				14335	7426	9213	9248	14549	14549					-0.015083566329622045
GTFGATSLQQR	11	Unmodified	_GTFGATSLQQR_					0	0	0		nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.3021240234375	2	583.301644	1164.58874	0.00082509	4.8128E-07	1.7393	0.0010146	1.7402	0.001015	583.3029778161658	28.678	0.21562	28.678	28.553	28.769	0					8	5	2	0	0	0	0.28575	1	10176	10176		63.426	15.467	1	243080			14336	7955	9214	9249	14550	14550					0.013024408695855527
GTFGATSLQQR	11	Unmodified	_GTFGATSLQQR_					0	0	0		nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.3026123046875	2	583.301644	1164.58874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.471	1	28.471	27.971	28.971	0								0	0	0	0.43508	1	9185	9185		32.751	3.601	1				14337	7955	9214	9249	14551	14551					0.013024408695855527
GTFGATSLQQR	11	Unmodified	_GTFGATSLQQR_					0	0	0		nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.3018188476562	2	583.301644	1164.58874	-0.29716	-0.00017333	0.39765	0.00023195	0.10049	5.8618E-05	583.3020310237097	28.704	0.16436	28.704	28.597	28.762	0					8	3	3	0	0	0	0.0028782	1	10558	10558		122.94	53.312	1	222500			14338	7955	9214	9249	14552	14552					0.013024408695855527
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.21881103515625	2	412.21906	822.423567	-0.1523	-6.278E-05	-0.19796	-8.1603E-05	-0.35026	-0.00014438	412.21895300601096	26.216	0.51245	26.216	26.079	26.592	0					46	17	4	0	0	0	0.015496	1	7916	7916		129.42	44.26	1	5134300			14339	3401	9215	9250	14553	14553					0.00525253800583414
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.2189025878906	2	412.21906	822.423567	-0.69185	-0.0002852	0.55405	0.00022839	-0.1378	-5.6805E-05	412.2193132944164	26.49	1.3508	26.49	26.314	27.665	0					66	32	5	0	0	0	0.012231	1	9129	9129		136.27	19.365	1	30363000			14340	3401	9215	9250	14554	14554					0.00525253800583414
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	412.2186584472656	2	412.21906	822.423567	-0.90904	-0.00037472	0.60658	0.00025004	-0.30246	-0.00012468	412.21927008191864	26.216	0.33499	26.216	26.103	26.438	0					25	10	3	0	0	0	0.063171	1	8188	8188		90.601	23.107	1	1321300			14341	3401	9215	9250	14555	14555					0.00525253800583414
GTFGGLGSKSK	11	Unmodified	_GTFGGLGSKSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7827758789062	2	519.782556	1037.55056	0.23293	0.00012107	0.037995	1.9749E-05	0.27092	0.00014082	519.7826578666709	20.75	0.32089	20.75	20.68	21	0					28	10	4	0	0	0	6.0253E-05	1	5852	5852		156.16	64.895	1	2939300			14342	3401	9216	9251	14556	14556					0.0332855495489639
GTFGGLGSKSK	11	Unmodified	_GTFGGLGSKSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7825317382812	2	519.782556	1037.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.974	1	20.974	20.474	21.474	0								0	0	0	2.9724E-07	1	6882	6882		153.1	62.501	1				14343	3401	9216	9251	14557	14557					0.0332855495489639
GTFGKALRR	9	Unmodified	_GTFGKALRR_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3;ENST00000433272.6_1_12:59266356-59274151:-|nuORF	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.3009948730469	2	503.30125	1004.58795	-0.49428	-0.00024877	-0.049157	-2.4741E-05	-0.54343	-0.00027351	503.3013547955139	19.156	0.65914	19.156	19.05	19.71	0					17	13	3	0	0	0	0.21263	1	6016	6016		35.618	0	1	1331300			14344	4318	9217	9252	14558	14558					0.08583691011165229
GTFGKVKVGK	10	Unmodified	_GTFGKVKVGK_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;ENST00000511248.1_1_5:40777545-40798228:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF	ENSG00000132356|ENST00000397128|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.87811279296875	3	340.878198	1019.61277	0.21836	7.4434E-05	-0.24949	-8.5046E-05	-0.031133	-1.0612E-05	340.8780160223073	19.463	0.13181	19.463	19.393	19.525	0					10	4	3	0	0	0	0.62149	1	5041	5041		31.634	0.10446	1	356460			14345	3779	9218	9253	14559	14559					0.10374326093904074
GTFGKVKVGK	10	Unmodified	_GTFGKVKVGK_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;ENST00000511248.1_1_5:40777545-40798228:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF	ENSG00000132356|ENST00000397128|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.8782043457031	3	340.878198	1019.61277	0.51014	0.0001739	-0.65256	-0.00022244	-0.14242	-4.8547E-05	340.8779980054777	19.819	0.37155	19.819	19.693	20.064	0					19	8	4	0	0	0	0.39647	1	6037	6037		56.632	17.379	1	2818300			14346	3779	9218	9253	14560	14560					0.10374326093904074
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2557373046875	2	461.255643	920.496732	0.099587	4.5935E-05	-0.60239	-0.00027786	-0.50281	-0.00023192	461.2553743959352	34.162	0.41349	34.162	34.038	34.452	0					51	19	4	0	0	0	0.51991	1	11255	11255		30.318	4.7437	1	3707900			14347	6519	9219	9254	14561	14561					0.0333038252319966
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2553405761719	2	461.255643	920.496732	-0.44615	-0.00020579	-0.20103	-9.2728E-05	-0.64718	-0.00029852	461.25555154261525	34.157	0.21834	34.157	34.067	34.286	0					20	9	3	0	0	0	0.056004	1	11138	11138		93.143	33.025	1	522280			14348	6519	9219	9254	14562	14562					0.0333038252319966
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2553405761719	2	461.255643	920.496732	-0.7067	-0.00032597	0.13791	6.3612E-05	-0.56879	-0.00026236	461.25579197054464	34.408	0.63106	34.408	34.284	34.915	0					34	16	3	0	0	0	0.056004	1	12801	12801		93.143	19.169	1	2124000			14349	6519	9219	9254	14563	14563					0.0333038252319966
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2552795410156	2	461.255643	920.496732	-0.84357	-0.0003891	0.26803	0.00012363	-0.57554	-0.00026547	461.2557638310587	34.248	0.68056	34.248	34.092	34.772	0					70	30	5	0	0	0	0.035062	1	11507	11507		104.06	41.949	1	5154900			14350	6519	9219	9254	14564	14564					0.0333038252319966
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2554626464844	2	461.255643	920.496732	-0.15492	-7.1459E-05	-0.39616	-0.00018273	-0.55108	-0.00025419	461.2554620329341	34.2	0.55788	34.2	34.065	34.623	0					47	17	4	0	0	0	0.026538	1	12047	12047		112.41	24.714	1	3955100			14351	6519	9219	9254	14565	14565					0.0333038252319966
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.25531005859375	2	461.255643	920.496732	0.83418	0.00038477	-1.2667	-0.00058429	-0.43256	-0.00019952	461.2551339582169	34.385	0.80308	34.385	34.229	35.032	0					47	16	5	0	0	0	0.0071053	1	13160	13160		148.99	29.43	1	30760000			14352	6519	9219	9254	14566	14566					0.0333038252319966
GTFNPEKGKQK	11	Unmodified	_GTFNPEKGKQK_					0	0	0		nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-2|MYO9A	nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	617.834228515625	2	617.332944	1232.65134	-0.66095	-0.00040803	0.23262	0.0001436	-0.42834	-0.00026443	617.8344044207357	15.275	0.1423	15.275	15.178	15.321	0					6	4	2	0	0	0	0.64626	1	3464	3464		32.751	7.1765	1	118600			14353	1398	9220	9255	14567	14567					0.04431586937744214
GTFQTTMTK	9	Unmodified	_GTFQTTMTK_					0	0	0		ENST00000517862.1_1_8:87552529-87557099:+|nuORF;ENSG00000085719|ENST00000517490|CPNE3	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.7496032714844	2	507.749867	1013.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.727	1	24.727	24.227	25.227	0								0	0	0	0.040385	1	7340	7340		90.601	18.723	1				14354	1731	9221	9256	14568	14568					-0.021021825624416124
GTFQTTMTK	9	Unmodified	_GTFQTTMTK_					0	0	0		ENST00000517862.1_1_8:87552529-87557099:+|nuORF;ENSG00000085719|ENST00000517490|CPNE3	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.75006103515625	2	507.749867	1013.48518	-0.029738	-1.5099E-05	-0.5624	-0.00028556	-0.59214	-0.00030066	507.74988025057615	25.017	0.2111	25.017	24.891	25.102	0					14	5	4	0	0	0	0.046074	1	8497	8497		96.665	19.347	1	595740			14355	1731	9221	9256	14569	14569					-0.021021825624416124
GTFQTTMTK	9	Unmodified	_GTFQTTMTK_					0	0	0		ENST00000517862.1_1_8:87552529-87557099:+|nuORF;ENSG00000085719|ENST00000517490|CPNE3	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7496337890625	2	507.749867	1013.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.027	1	25.027	24.527	25.527	0								0	0	0	0.079836	1	8831	8831		77.533	17.415	1				14356	1731	9221	9256	14570	14570					-0.021021825624416124
GTFQTTMTK	9	Unmodified	_GTFQTTMTK_					0	0	0		ENST00000517862.1_1_8:87552529-87557099:+|nuORF;ENSG00000085719|ENST00000517490|CPNE3	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	ENST00000517862.1_1_8:87552529-87557099:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.74969482421875	2	507.749867	1013.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.963	1	24.963	24.463	25.463	0								0	0	0	0.043554	1	8679	8679		89.029	26.921	1				14357	1731	9221	9256	14571	14571					-0.021021825624416124
GTFSKLFGK	9	Unmodified	_GTFSKLFGK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.77886962890625	2	492.779285	983.544017	-0.07169	-3.5327E-05	-0.34131	-0.00016819	-0.413	-0.00020352	492.77916469656407	34.724	0.23131	34.724	34.625	34.856	0					19	10	3	0	0	0	0.40353	1	11355	11355		41.427	4.9799	1	151690			14358	7237	9222	9257	14572	14572					0.05158661794200725
GTFSKLFGK	9	Unmodified	_GTFSKLFGK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.77880859375	2	492.779285	983.544017	-0.52467	-0.00025855	0.70229	0.00034608	0.17762	8.7529E-05	492.77931970983764	34.975	0.43432	34.975	34.871	35.305	0					27	11	4	0	0	0	0.054723	1	13057	13057		93.598	40.246	1	917910			14359	7237	9222	9257	14573	14573					0.05158661794200725
GTFSKLFGK	9	Unmodified	_GTFSKLFGK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7790222167969	2	492.779285	983.544017	-1.266	-0.00062385	0.89975	0.00044338	-0.36623	-0.00018047	492.77964410945856	34.8	0.28967	34.8	34.677	34.967	0					32	13	3	0	0	0	0.36892	1	11727	11727		44.377	5.571	1	453970			14360	7237	9222	9257	14574	14574					0.05158661794200725
GTFSKLFGK	9	Unmodified	_GTFSKLFGK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7790222167969	2	492.779285	983.544017	0.6084	0.00029981	-0.3437	-0.00016937	0.2647	0.00013044	492.77875179626415	35.007	0.42664	35.007	34.863	35.29	0					55	12	6	0	0	0	0.032383	1	13506	13506		106.68	40.254	1	3815400			14361	7237	9222	9257	14575	14575					0.05158661794200725
GTFSKLFGK	9	Unmodified	_GTFSKLFGK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7789306640625	2	492.779285	983.544017	-0.011924	-5.8758E-06	-0.29238	-0.00014408	-0.30431	-0.00014996	492.7789679851297	34.752	0.31753	34.752	34.645	34.963	0					26	11	3	0	0	0	0.16806	1	12312	12312		65.465	23.069	1	343660			14362	7237	9222	9257	14576	14576					0.05158661794200725
GTFSKLFGK	9	Unmodified	_GTFSKLFGK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.779296875	2	492.779285	983.544017	0.85433	0.000421	-0.87565	-0.0004315	-0.021318	-1.0505E-05	492.7787130196791	34.872	0.41187	34.872	34.767	35.179	0					26	8	4	0	0	0	0.015496	1	13419	13419		129.42	52.575	1	5148200			14363	7237	9222	9257	14577	14577					0.05158661794200725
GTFSKLFGK	9	Unmodified	_GTFSKLFGK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.77911376953125	2	492.779285	983.544017	2.749	0.0013546	-2.5064	-0.0012351	0.24261	0.00011955	492.777726892986	34.909	0.46207	34.909	34.8	35.262	0					30	9	4	0	0	0	0.012936	1	13412	13412		134.77	68.336	1	5984300			14364	7237	9222	9257	14578	14578					0.05158661794200725
GTFSTVTSTVK	11	Unmodified	_GTFSTVTSTVK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.3008422851562	2	564.300778	1126.587	1.2367	0.00069787	-1.6211	-0.00091478	-0.3844	-0.00021692	564.2996937323292	29.925	0.29675	29.925	29.792	30.089	0					16	11	3	0	0	0	0.080725	1	9480	9480		94.409	30.875	1	287780			14365	6926	9223	9258	14579	14579					0.02877387060948422
GTFSTVTSTVK	11	Unmodified	_GTFSTVTSTVK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.3009033203125	2	564.300778	1126.587	0.37523	0.00021174	0.10982	6.197E-05	0.48505	0.00027371	564.3007260760103	30.203	0.25124	30.203	30.115	30.366	0					14	6	3	0	0	0	6.9163E-05	1	10856	10856		150.81	62.633	1	1175000			14366	6926	9223	9258	14580	14580					0.02877387060948422
GTFSTVTSTVK	11	Unmodified	_GTFSTVTSTVK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.300537109375	2	564.300778	1126.587	-0.36649	-0.00020681	1.0557	0.00059573	0.6892	0.00038891	564.3013111542732	29.98	0.18509	29.98	29.889	30.074	0					11	6	2	0	0	0	0.07149	1	9797	9797		96.665	45.472	1	247140			14367	6926	9223	9258	14581	14581					0.02877387060948422
GTFSTVTSTVK	11	Unmodified	_GTFSTVTSTVK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3009033203125	2	564.300778	1126.587	0.14204	8.0155E-05	0.53482	0.0003018	0.67687	0.00038196	564.3009473535975	30.213	0.27442	30.213	30.076	30.35	0					16	6	4	0	0	0	0.00055771	1	11259	11259		139.38	79.451	1	1146900			14368	6926	9223	9258	14582	14582					0.02877387060948422
GTFVGVHVR	9	Unmodified	_GTFVGVHVR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.27471923828125	2	486.274701	970.534849	0.013118	6.3791E-06	-0.57809	-0.00028111	-0.56498	-0.00027473	486.2744010271377	26.217	0.29148	26.217	26.13	26.421	0					19	9	3	0	0	0	0.12239	1	7930	7930		74.255	33.477	1	456030			14369	6634	9224	9259	14583	14583					0.0484031322851024
GTFVGVHVR	9	Unmodified	_GTFVGVHVR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2745056152344	2	486.274701	970.534849	-0.29054	-0.00014128	0.20878	0.00010153	-0.08176	-3.9758E-05	486.2748198402471	26.49	0.49007	26.49	26.356	26.847	0					21	11	3	0	0	0	0.019882	1	9130	9130		122.18	61.882	1	3142800			14370	6634	9224	9259	14584	14584					0.0484031322851024
GTFVGVHVR	9	Unmodified	_GTFVGVHVR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.51898193359375	3	324.518893	970.534849	0.53415	0.00017334	-0.73893	-0.0002398	-0.20478	-6.6454E-05	324.51869554077797	26.49	0.27586	26.49	26.395	26.671	0					15	6	3	0	0	0	0.51817	1	9152	9152		37.812	0	1	754390			14371	6634	9224	9259	14585	14585					0.0484031322851024
GTFVGVHVR	9	Unmodified	_GTFVGVHVR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.27471923828125	2	486.274701	970.534849	-0.85502	-0.00041577	0.3004	0.00014608	-0.55461	-0.00026969	486.27489702362425	26.235	0.23909	26.235	26.137	26.376	0					10	7	2	0	0	0	0.24095	1	8201	8201		56.721	24.766	1	274190			14372	6634	9224	9259	14586	14586					0.0484031322851024
GTFVGVHVR	9	Unmodified	_GTFVGVHVR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2745361328125	2	486.274701	970.534849	-0.68472	-0.00033296	0.32255	0.00015685	-0.36218	-0.00017612	486.27487771467156	26.452	0.41841	26.452	26.343	26.761	0					14	8	2	0	0	0	0.012915	1	9479	9479		134.81	76.999	1	1493100			14373	6634	9224	9259	14587	14587					0.0484031322851024
GTFVGVHVR	9	Unmodified	_GTFVGVHVR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.27447509765625	2	486.274701	970.534849	-2.9133	-0.0014167	1.3447	0.00065391	-1.5686	-0.00076276	486.2757151836136	26.284	0.23394	26.284	26.192	26.426	0					10	5	2	0	0	0	0.063823	1	8448	8448		90.37	40.345	1	170570			14374	6634	9224	9259	14588	14588					0.0484031322851024
GTFVGVHVR	9	Unmodified	_GTFVGVHVR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2744445800781	2	486.274701	970.534849	2.5167	0.0012238	-3.4517	-0.0016785	-0.93505	-0.00045469	486.2733154016274	26.426	0.32182	26.426	26.315	26.637	0					12	6	2	0	0	0	0.063823	1	9348	9348		90.37	44.418	1	1585500			14375	6634	9224	9259	14589	14589					0.0484031322851024
GTFVMYSAK	9	Unmodified	_GTFVMYSAK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2494201660156	2	502.249503	1002.48445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.796	1	32.796	32.296	33.296	0								0	0	0	0.11159	1	12074	12074		68.846	2.4169	1				14376	11716	9225	9260	14590	14590					-0.01668977211500078
GTGALILQK	9	Unmodified	_GTGALILQK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.77880859375	2	450.779285	899.544017	-0.30861	-0.00013912	-0.76214	-0.00034356	-1.0708	-0.00048268	450.7788726990646	29	0.2213	29	28.904	29.125	0					18	8	3	0	0	0	0.012915	1	9096	9096		134.81	26.723	1	190020			14377	4881	9226	9261	14591	14591					0.09022661794176656
GTGALILQK	9	Unmodified	_GTGALILQK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7789001464844	2	450.779285	899.544017	-0.49025	-0.000221	-0.25694	-0.00011583	-0.7472	-0.00033682	450.779148765404	29.281	0.28815	29.281	29.157	29.445	0					12	7	2	0	0	0	0.014688	1	10428	10428		131.03	34.841	1	1086900			14378	4881	9226	9261	14592	14592					0.09022661794176656
GTGALILQK	9	Unmodified	_GTGALILQK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.77880859375	2	450.779285	899.544017	-1.1884	-0.00053569	0.32736	0.00014756	-0.861	-0.00038812	450.77937236971417	29.001	0.20445	29.001	28.936	29.141	0					19	8	3	0	0	0	0.037569	1	9407	9407		101.6	24.827	1	144700			14379	4881	9226	9261	14593	14593					0.09022661794176656
GTGALILQK	9	Unmodified	_GTGALILQK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.779052734375	2	450.779285	899.544017	-0.31722	-0.000143	-0.31358	-0.00014135	-0.6308	-0.00028435	450.7791611859098	29.274	0.18779	29.274	29.179	29.367	0					9	4	3	0	0	0	0.055856	1	10812	10812		93.195	10.89	1	198880			14380	4881	9226	9261	14594	14594					0.09022661794176656
GTGALILQK	9	Unmodified	_GTGALILQK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.779052734375	2	450.779285	899.544017	-2.6065	-0.0011749	2.1079	0.00095018	-0.49859	-0.00022475	450.78015831884437	29.051	0.18824	29.051	28.953	29.141	0					10	5	2	0	0	0	0.019882	1	9728	9728		122.18	12.056	1	184650			14381	4881	9226	9261	14595	14595					0.09022661794176656
GTGALKTDFTR	11	Unmodified	_GTGALKTDFTR_					0	0	0		ENSG00000211456|ENST00000389061|SACM1L;ENST00000464102.5_1_3:45776682-45785158:+|nuORF;nc|ENSG00000211456|Q9NTJ5-2|SACM1L	ENSG00000211456|ENST00000389061|SACM1L	ENSG00000211456|ENST00000389061|SACM1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.5435485839844	3	389.543655	1165.60914	0.23509	9.1577E-05	-0.46366	-0.00018062	-0.22858	-8.904E-05	389.5434100318261	21.828	0.23794	21.828	21.736	21.973	0					14	5	4	0	0	0	0.33911	1	6387	6387		58.246	1.8125	1	1281500			14382	7775	9227	9262	14596	14596					0.03295611529370035
GTGALKTDFTR	11	Unmodified	_GTGALKTDFTR_					0	0	0		ENSG00000211456|ENST00000389061|SACM1L;ENST00000464102.5_1_3:45776682-45785158:+|nuORF;nc|ENSG00000211456|Q9NTJ5-2|SACM1L	ENSG00000211456|ENST00000389061|SACM1L	ENSG00000211456|ENST00000389061|SACM1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.54345703125	3	389.543655	1165.60914	-0.69961	-0.00027253	0.23392	9.112E-05	-0.46569	-0.00018141	389.54399919860253	21.945	0.51306	21.945	21.84	22.353	0					31	10	5	0	0	0	0.33911	1	7213	7213		58.246	8.7102	1	30695000			14383	7775	9227	9262	14597	14597					0.03295611529370035
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.2008361816406	2	406.200867	810.387182	0.62113	0.0002523	-0.79992	-0.00032493	-0.17879	-7.2625E-05	406.20051081175853	16.608	0.22073	16.608	16.538	16.759	0					16	7	3	0	0	0	0.035062	1	3809	3809		104.06	18.697	1	806740			14384	7222;6080;3386;7010;7195	9228	9263	14598	14598					-0.025596230961355104
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.20062255859375	2	406.200867	810.387182	-1.3824	-0.00056154	0.96661	0.00039264	-0.41581	-0.0001689	406.20125266658874	16.649	0.2282	16.649	16.549	16.777	0					18	9	3	0	0	0	0.028876	1	4025	4025		110.12	27.815	1	369270			14385	7222;6080;3386;7010;7195	9228	9263	14599	14599					-0.025596230961355104
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.20068359375	2	406.200867	810.387182	0.046673	1.8958E-05	-0.29506	-0.00011985	-0.24838	-0.00010089	406.20072075841534	16.871	0.56496	16.871	16.769	17.334	0					24	11	5	0	0	0	0.012231	1	4897	4897		136.27	33.495	1	4395300			14386	7222;6080;3386;7010;7195	9228	9263	14600	14600					-0.025596230961355104
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.20111083984375	2	406.200867	810.387182	0.14044	5.7047E-05	-0.23812	-9.6725E-05	-0.097682	-3.9679E-05	406.2007144783421	16.677	0.22713	16.677	16.607	16.834	0					16	7	3	0	0	0	0.010494	1	4001	4001		139.97	37.197	1	691610			14387	7222;6080;3386;7010;7195	9228	9263	14601	14601					-0.025596230961355104
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.20068359375	2	406.200867	810.387182	-0.10538	-4.2804E-05	-0.092081	-3.7403E-05	-0.19746	-8.0208E-05	406.20084155089233	16.683	0.26381	16.683	16.595	16.859	0					19	8	3	0	0	0	0.025517	1	3997	3997		113.41	19.405	1	746110			14388	7222;6080;3386;7010;7195	9228	9263	14602	14602					-0.025596230961355104
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.20074462890625	2	406.200867	810.387182	-0.56603	-0.00022992	0.41935	0.00017034	-0.14668	-5.958E-05	406.2010132384167	16.852	0.51219	16.852	16.747	17.259	0					26	10	4	0	0	0	0.010494	1	4738	4738		139.97	49.194	1	8473800			14389	7222;6080;3386;7010;7195	9228	9263	14603	14603					-0.025596230961355104
GTGASGSFKLN	11	Unmodified	_GTGASGSFKLN_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7645874023438	2	519.764363	1037.51417	0.064054	3.3293E-05	0.82638	0.00042952	0.89043	0.00046282	519.7647683422666	27.966	0.18077	27.966	27.862	28.043	0					10	4	3	0	0	0	0.23242	1	9837	9837		70.399	13.678	1	495720			14390	7222;6080;3386;7010	9229	9264	14604	14604					-0.0030832194179311045
GTGASGSFKLN	11	Unmodified	_GTGASGSFKLN_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.76513671875	2	519.764363	1037.51417	0.21438	0.00011143	0.9368	0.00048692	1.1512	0.00059835	519.7648151438932	27.715	0.21359	27.715	27.614	27.827	0					13	7	2	0	0	0	0.23242	1	8866	8866		70.399	3.9693	1	174970			14391	7222;6080;3386;7010	9229	9264	14605	14605					-0.0030832194179311045
GTGASGSFKLN	11	Unmodified	_GTGASGSFKLN_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7647705078125	2	519.764363	1037.51417	1.6482	0.00085669	-1.092	-0.00056757	0.55624	0.00028911	519.7639303807455	27.955	0.2946	27.955	27.846	28.141	0					11	6	2	0	0	0	0.11154	1	10198	10198		86.882	10.712	1	1210100			14392	7222;6080;3386;7010	9229	9264	14606	14606					-0.0030832194179311045
GTGDVKLLK	9	Unmodified	_GTGDVKLLK_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20106640-20110140:+|nuORF;ENST00000488484.1_1_22:20105172-20110015:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7843322753906	2	465.784567	929.554582	0.068188	3.1761E-05	-0.71976	-0.00033525	-0.65157	-0.00030349	465.78420767943885	23.263	0.30235	23.263	23.183	23.485	0					19	8	4	0	0	0	0.01873	1	6697	6697		124.08	17.073	1	1146200			14393	1946	9230	9265	14607	14607					0.08698644448611503
GTGDVKLLK	9	Unmodified	_GTGDVKLLK_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20106640-20110140:+|nuORF;ENST00000488484.1_1_22:20105172-20110015:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7840576171875	2	465.784567	929.554582	-0.876	-0.00040803	0.18805	8.7591E-05	-0.68795	-0.00032044	465.78468150039424	23.343	0.28252	23.343	23.179	23.461	0					22	9	4	0	0	0	0.15163	1	6978	6978		67.494	2.0283	1	809000			14394	1946	9230	9265	14608	14608					0.08698644448611503
GTGDVKLLK	9	Unmodified	_GTGDVKLLK_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20106640-20110140:+|nuORF;ENST00000488484.1_1_22:20105172-20110015:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.78424072265625	2	465.784567	929.554582	-0.57844	-0.00026943	-0.23589	-0.00010987	-0.81433	-0.0003793	465.7844113039025	23.347	0.27497	23.347	23.251	23.526	0					15	6	3	0	0	0	0.04067	1	7099	7099		98.582	13.666	1	1419300			14395	1946	9230	9265	14609	14609					0.08698644448611503
GTGDVKLLK	9	Unmodified	_GTGDVKLLK_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20106640-20110140:+|nuORF;ENST00000488484.1_1_22:20105172-20110015:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.78424072265625	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.498	1	23.498	22.998	23.998	0								0	0	0	0.0052769	1	7976	7976		114.89	32.654	1				14396	1946	9230	9265	14610	14610					0.08698644448611503
GTGETAPLMK	10	Unmodified	_GTGETAPLMK_					0	0	0			REV__ENST00000487159.5_2_3:42128838-42166989:+|nuORF	REV__ENST00000487159.5_2_3:42128838-42166989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.759521484375	2	502.757692	1003.50083	0.13426	6.7501E-05	3.3966	0.0017077	3.5309	0.0017752	502.75967336037513	18.201	0.17528	18.201	18.101	18.277	0					6	4	2	0	0	0	0.61187	1	4714	4714		32.812	0	1	134640	+		14397	19676	9231	9266	14611	14611					-0.0007789604539993888
GTGFRRKR	8	Unmodified	_GTGFRRKR_					0	0	0		ENST00000564288.5_2_1:39670752-39696910:+|nuORF	ENST00000564288.5_2_1:39670752-39696910:+|nuORF	ENST00000564288.5_2_1:39670752-39696910:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.53094482421875	3	326.529903	976.567881	2.9987	0.00097916	-0.26032	-8.5002E-05	2.7384	0.00089416	326.5298261481031	28.534	0.31498	28.534	28.426	28.741	0					12	6	2	0	0	0	0.74117	1	10363	10363		30.504	9.5567	1	1008400			14398	10740	9232	9267	14612	14612					0.07865940071224031
GTGFTPMVK	9	Unmodified	_GTGFTPMVK_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.24285888671875	2	469.244221	936.473888	0.62354	0.00029259	0.14348	6.7328E-05	0.76702	0.00035992	469.24421307987444	30.568	0.24509	30.568	30.496	30.742	0					10	5	2	0	0	0	0.1424	1	11449	11449		69.628	7.5202	1	511140			14399	1376	9233	9268	14613	14613					0.0031104013406775266
GTGIVGVFVK	10	Unmodified	_GTGIVGVFVK_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.794921875	2	488.794935	975.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.072	1	42.072	41.572	42.572	0								0	0	0	0.34115	1	15958	15958		44.377	14.059	1				14400	2481	9234	9269	14614	14614					0.0865523482827939
GTGIVGVFVK	10	Unmodified	_GTGIVGVFVK_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.79449462890625	2	488.794935	975.575317	0.61528	0.00030075	-1.5235	-0.00074469	-0.90824	-0.00044394	488.7943823783559	42.045	0.13419	42.045	41.98	42.114	0					11	6	2	0	0	0	0.50881	1	16520	16520		44.377	11.565	1	57941			14401	2481	9234	9269	14615	14615					0.0865523482827939
GTGKNFVSK	9	Unmodified	_GTGKNFVSK_					0	0	0		nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;ENST00000473604.2_1_9:132580793-132585603:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2582092285156	2	469.258717	936.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.366	1	16.366	15.866	16.866	0								0	0	0	0.088368	1	4663	4663		75.043	10.836	1				14402	4114	9235	9270	14616	14616					0.032089007547028814
GTGKTLIGK	9	Unmodified	_GTGKTLIGK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.C453R|1|0.23|ENSG00000132436|chr7:50445931-50445931|A/G|missense_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7711486816406	2	437.77146	873.528367	0.0203	8.8866E-06	-0.47199	-0.00020662	-0.45169	-0.00019774	437.77121540165473	17.918	0.20076	17.918	17.866	18.067	0					13	4	5	0	0	0	0.02429	1	5153	5153		114.89	19.079	1	2784100			14403	3788	9236	9271	14617	14617					0.08654375277149029
GTGKTLIGK	9	Unmodified	_GTGKTLIGK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.C453R|1|0.23|ENSG00000132436|chr7:50445931-50445931|A/G|missense_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7710876464844	2	437.77146	873.528367	-0.39957	-0.00017492	-0.38443	-0.00016829	-0.784	-0.00034321	437.7712614393634	17.913	0.37035	17.913	17.802	18.173	0					19	7	4	0	0	0	0.0055674	1	5390	5390		155.58	10.429	1	8720400			14404	3788	9236	9271	14618	14618					0.08654375277149029
GTGKTLIGK	9	Unmodified	_GTGKTLIGK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1;FIGNL1|p.C453R|1|0.23|ENSG00000132436|chr7:50445931-50445931|A/G|missense_variant	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7712097167969	2	437.77146	873.528367	-0.56835	-0.00024881	-0.10243	-4.4841E-05	-0.67079	-0.00029365	437.77144317108383	17.891	0.45876	17.891	17.683	18.142	0					19	9	4	0	0	0	0.017421	1	5233	5233		126.24	5.3742	1	4523700			14405	3788	9236	9271	14619	14619					0.08654375277149029
GTGKTLLAK	9	Unmodified	_GTGKTLLAK_					0	0	0		nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6;ENST00000557444.5_1_16:90055269-90057690:+|nuORF;ENST00000427658.1_1_16:90057264-90060229:+|nuORF;ENST00000437774.5_1_16:90055269-90060229:+|nuORF;ENST00000418696.5_2_16:90046667-90060229:+|nuORF;ENST00000436447.5_1_16:90046667-90060229:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENSG00000167216|ENST00000683218|KATNAL2;tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1;ENSG00000141385|ENST00000269143|AFG3L2;ENST00000481905.5_1_6:149919348-149924475:-|nuORF;nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000124587|Q13608-3|PEX6;ENST00000481905.5_1_6:149919348-149924475:-|nuORF	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.7795715332031	2	444.779285	887.544017	0.67849	0.00030178	-0.060209	-2.678E-05	0.61828	0.000275	444.7791355747406	18.056	0.090025	18.056	17.971	18.061	0					6	2	3	0	0	0	0.056004	1	4426	4426		93.143	0	1	129300			14406	3387;7151	9237	9272	14620	14620					0.09574661794192707
GTGKTTFVK	9	Unmodified	_GTGKTTFVK_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000541630.5_1_12:131357386-131357560:+|nuORF;ENST00000464211.6_1_12:131357386-131359105:+|nuORF;ENST00000537745.5_1_12:131357386-131357560:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7690124511719	2	469.768917	937.523281	0.87004	0.00040872	-0.60516	-0.00028429	0.26488	0.00012443	469.7686130743122	17.058	0.29292	17.058	16.967	17.26	0					13	9	3	0	0	0	0.19952	1	3976	3976		61.691	12.25	1	580660			14407	3778	9238	9273	14621	14621					0.0520207141452147
GTGKTTFVK	9	Unmodified	_GTGKTTFVK_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000541630.5_1_12:131357386-131357560:+|nuORF;ENST00000464211.6_1_12:131357386-131359105:+|nuORF;ENST00000537745.5_1_12:131357386-131357560:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7685852050781	2	469.768917	937.523281	0.45745	0.0002149	-1.0132	-0.00047597	-0.55574	-0.00026107	469.76842210162727	17.366	0.33414	17.366	17.273	17.608	0					20	8	5	0	0	0	0.035106	1	4895	4895		104.01	27.239	1	5442500			14408	3778	9238	9273	14622	14622					0.0520207141452147
GTGLRFPR	8	Unmodified	_GTGLRFPR_					0	0	0			REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2603454589844	2	452.261594	902.508634	-0.32724	-0.000148	-2.4703	-0.0011172	-2.7975	-0.0012652	452.26054585331957	30.766	0.15499	30.766	30.697	30.852	0					9	6	2	0	0	0	0.52345	1	9840	9840		57.811	1.0902	1	55735	+		14409	16488	9239	9274	14623	14623					0.05348044057041079
GTGNITLAAVR	11	Unmodified	_GTGNITLAAVR_					0	0	0			REV__nc|ENSG00000067141|Q92859-3|NEO1	REV__nc|ENSG00000067141|Q92859-3|NEO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.8069458007812	2	536.809105	1071.60366	2.1186	0.0011373	-3.4168	-0.0018342	-1.2982	-0.00069691	536.8083606457201	28.595	0.37149	28.595	28.447	28.818	0					26	9	4	0	0	0	0.62108	1	10122	10122		35.152	2.3396	1	930980	+		14410	13136	9240	9275	14624	14624					0.07071932737562747
GTGNLGFPK	9	Unmodified	_GTGNLGFPK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.7400207519531	2	445.74016	889.465767	-0.29609	-0.00013198	-0.55391	-0.0002469	-0.85	-0.00037888	445.7400757286563	29.547	0.17908	29.547	29.486	29.666	0					12	6	2	0	0	0	0.33044	1	9330	9330		47.657	3.5405	1	140850			14411	6411	9241	9276	14625	14625					0.016612292089462244
GTGNLGFPK	9	Unmodified	_GTGNLGFPK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.7399597167969	2	445.74016	889.465767	-0.40059	-0.00017856	-0.71943	-0.00032068	-1.12	-0.00049924	445.74021974716516	29.848	0.52984	29.848	29.557	30.087	0					29	13	4	0	0	0	0.037569	1	10689	10689		101.6	30.305	1	702640			14412	6411	9241	9276	14626	14626					0.016612292089462244
GTGNMEIKK	9	Unmodified	_GTGNMEIKK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.258056640625	2	489.257859	976.501166	-0.032835	-1.6065E-05	-0.85773	-0.00041965	-0.89057	-0.00043572	489.2578156495007	16.717	0.12186	16.717	16.656	16.778	0					9	4	3	0	0	0	0.10506	1	3854	3854		78.264	14.958	1	349940			14413	4265	9242	9277	14627	14627					0.011975236744547146
GTGNMEIKK	9	Unmodified	_GTGNMEIKK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2577819824219	2	489.257859	976.501166	-0.43261	-0.00021166	-0.18424	-9.0138E-05	-0.61685	-0.0003018	489.25796222498496	17.017	0.13375	17.017	16.969	17.102	0					10	3	4	0	0	0	0.014413	1	4729	4729		131.62	38.421	1	1509300			14414	4265	9242	9277	14628	14628					0.011975236744547146
GTGNMEIKK	9	Unmodified	_GTGNMEIKK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.25750732421875	2	489.257859	976.501166	-1.2523	-0.0006127	0.37788	0.00018488	-0.87441	-0.00042781	489.2582048447312	16.774	0.13665	16.774	16.72	16.856	0					12	5	3	0	0	0	0.029571	1	4079	4079		109.44	37.561	1	471050			14415	4265	9242	9277	14629	14629					0.011975236744547146
GTGNMEIKK	9	Unmodified	_GTGNMEIKK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2575378417969	2	489.257859	976.501166	0.60823	0.00029758	-1.6582	-0.00081128	-1.05	-0.0005137	489.25719124711117	17.004	0.16792	17.004	16.896	17.064	0					10	3	4	0	0	0	0.021015	1	4983	4983		120.31	13.298	1	3112400			14416	4265	9242	9277	14630	14630					0.011975236744547146
GTGNMEIKK	9	Unmodified	_GTGNMEIKK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2582702636719	2	489.257859	976.501166	-2.8601	-0.0013993	1.9702	0.00096392	-0.88988	-0.00043538	489.25901122264287	16.803	0.15155	16.803	16.734	16.885	0					9	4	3	0	0	0	0.076532	1	4050	4050		85.862	20.059	1	749030			14417	4265	9242	9277	14631	14631					0.011975236744547146
GTGNMEIKK	9	Unmodified	_GTGNMEIKK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.50762939453125	3	326.507665	976.501166	0.008113	2.6489E-06	-0.18305	-5.9766E-05	-0.17493	-5.7117E-05	326.50758724251443	16.976	0.16467	16.976	16.891	17.056	0					7	3	3	0	0	0	0.47038	1	4810	4810		42.864	18.345	1	186310			14418	4265	9242	9277	14632	14632					0.011975236744547146
GTGPNVPPR	9	Unmodified	_GTGPNVPPR_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant;PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant;PEAK1|p.N1433Tfs*19|1|0.1|ENSG00000173517|chr15:77115099-77115099|T/-|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7429504394531	2	447.743234	893.471915	-0.41892	-0.00018757	0.34509	0.00015451	-0.073826	-3.3055E-05	447.74329741131965	18.906	1.5926	18.906	18.768	20.36	0					41	32	2	0	0	0	0.37197	1	5737	5737		44.117	0	1	318070			14419	6431	9243	9278	14633	14633					0.020917474404768654
GTGSAIPMK	9	Unmodified	_GTGSAIPMK_					0	0	0		nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2	nc|ENSG00000006744|Q9BQ52-2|ELAC2	nc|ENSG00000006744|Q9BQ52-2|ELAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2283630371094	2	431.228571	860.442588	0.76752	0.00033098	-1.7812	-0.00076809	-1.0136	-0.00043711	431.2281019806196	22.972	0.17548	22.972	22.887	23.063	0					9	4	3	0	0	0	0.44593	1	7553	7553		37.812	2.1932	1	323850			14420	986	9244	9279	14634	14634					0.0067846709997638754
GTGSAIPMK	9	Unmodified	_GTGSAIPMK_					0	0	0		nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2	nc|ENSG00000006744|Q9BQ52-2|ELAC2	nc|ENSG00000006744|Q9BQ52-2|ELAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2284240722656	2	431.228571	860.442588	-0.46495	-0.0002005	0.072908	3.144E-05	-0.39204	-0.00016906	431.22859799891273	22.878	0.16651	22.878	22.739	22.905	0					5	3	2	0	0	0	0.034359	1	7672	7672		104.75	27.9	1	186280			14421	986	9244	9279	14635	14635					0.0067846709997638754
GTGTESRGPGG	11	Unmodified	_GTGTESRGPGG_					0	0	0			REV__ENST00000494295.1_1_X:134477789-134477951:-|nuORF	REV__ENST00000494295.1_1_X:134477789-134477951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2299499511719	2	488.228145	974.441737	2.5869	0.001263	1.3088	0.000639	3.8957	0.001902	488.22882451560815	26.125	0.46818	26.125	25.966	26.434	0					19	9	3	0	0	0	0.48922	1	9200	9200		45.022	0.64502	1	981700	+		14422	19748	9245	9280	14636	14636					-0.04650656015360255
GTGTIIVAK	9	Unmodified	_GTGTIIVAK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2654724121094	2	430.26601	858.517468	0.1825	7.8523E-05	-0.52627	-0.00022643	-0.34377	-0.00014791	430.26575031306766	24.026	0.29455	24.026	23.931	24.225	0					18	9	3	0	0	0	0.21263	1	7010	7010		60.118	14.166	1	722900			14423	1705	9246	9281	14637	14637					0.08254972902841473
GTGTIIVAK	9	Unmodified	_GTGTIIVAK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2658996582031	2	430.26601	858.517468	-0.87116	-0.00037483	0.52434	0.00022561	-0.34681	-0.00014922	430.26624398987167	24.058	0.29807	24.058	23.96	24.258	0					22	9	4	0	0	0	0.025517	1	7299	7299		113.41	31.107	1	1168700			14424	1705	9246	9281	14638	14638					0.08254972902841473
GTGTIIVAK	9	Unmodified	_GTGTIIVAK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.26556396484375	2	430.26601	858.517468	0.18949	8.1531E-05	-0.66728	-0.00028711	-0.47779	-0.00020558	430.26566397752083	24.102	0.14933	24.102	24.006	24.155	0					6	3	2	0	0	0	0.063823	1	7450	7450		90.37	23.941	1	292740			14425	1705	9246	9281	14639	14639					0.08254972902841473
GTGTIIVAK	9	Unmodified	_GTGTIIVAK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2657775878906	2	430.26601	858.517468	-0.32154	-0.00013835	-0.10935	-4.705E-05	-0.43089	-0.0001854	430.26592306753275	24.085	0.24007	24.085	23.994	24.234	0					15	5	4	0	0	0	0.1424	1	7443	7443		69.628	18.292	1	941160			14426	1705	9246	9281	14640	14640					0.08254972902841473
GTGTIIVAK	9	Unmodified	_GTGTIIVAK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.2655944824219	2	430.26601	858.517468	-0.45061	-0.00019388	0.24162	0.00010396	-0.20898	-8.9919E-05	430.26609789557153	24.238	0.36593	24.238	24.13	24.496	0					18	7	4	0	0	0	0.063823	1	8323	8323		90.37	33.649	1	2545300			14427	1705	9246	9281	14641	14641					0.08254972902841473
GTGVKELPHAP	11	Unmodified	_GTGVKELPHAP_					0	0	0			REV__ENST00000331872.10_1_1:182352580-182352679:-|nuORF	REV__ENST00000331872.10_1_1:182352580-182352679:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.2056884765625	3	369.204862	1104.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.928	1	16.928	16.428	17.428	0								0	0	0	0.44926	1	4789	4789		26.063	2.5407	1		+		14428	18384	9247	9282	14642	14642					0.04464530363247832
GTGVTSLSK	9	Unmodified	_GTGVTSLSK_					0	0	0		ENSG00000175536|ENST00000310109|LIPT2	ENSG00000175536|ENST00000310109|LIPT2	ENSG00000175536|ENST00000310109|LIPT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2369079589844	2	425.23745	848.460347	0.30761	0.00013081	-0.86053	-0.00036593	-0.55292	-0.00023512	425.23700158395826	17.561	0.21949	17.561	17.417	17.636	0					13	7	3	0	0	0	0.4966	1	4193	4193		32.812	3.6629	1	278530			14429	6562	9248	9283	14643	14643					0.030055056264814084
GTHASEHAVNK	11	Unmodified	_GTHASEHAVNK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.7844848632812	2	575.783619	1149.55268	-0.094286	-5.4288E-05	0.79479	0.00045763	0.7005	0.00040334	575.783884832537	12.35	0.06032	12.35	12.293	12.353	0					4	2	2	0	0	0	0.24536	1	2576	2576		68.846	12.125	1	177530			14430	5918	9249	9284	14644	14644					-0.016110163072880823
GTHASEHAVNK	11	Unmodified	_GTHASEHAVNK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.7841186523438	2	575.783619	1149.55268	1.8536	0.0010673	-1.1838	-0.00068159	0.66987	0.0003857	575.7830032203885	12.345	0.094345	12.345	12.304	12.398	0					4	2	2	0	0	0	0.10275	1	2768	2768		89.029	37.836	1	212690			14431	5918	9249	9284	14645	14645					-0.016110163072880823
GTHASEHAVNK	11	Unmodified	_GTHASEHAVNK_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.7838134765625	2	575.783619	1149.55268	3.3108	0.0019063	-3.0423	-0.0017517	0.26843	0.00015456	575.7816690991094	12.349	0.12498	12.349	12.29	12.415	0					9	4	3	0	0	0	0.05239	1	2610	2610		104.01	50.662	1	200020			14432	5918	9249	9284	14646	14646					-0.016110163072880823
GTHKGAIEK	9	Unmodified	_GTHKGAIEK_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7638244628906	2	470.764166	939.513779	0.15456	7.2761E-05	-0.65568	-0.00030867	-0.50112	-0.00023591	470.7638869704498	12.116	0.06332	12.116	12.061	12.124	0					4	2	2	0	0	0	0.18416	1	2478	2478		63.534	1.4264	1	152330			14433	3635	9250	9285	14647	14647					0.04160303128992382
GTHKGAIEK	9	Unmodified	_GTHKGAIEK_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7640075683594	2	470.764166	939.513779	-0.12483	-5.8764E-05	-0.42734	-0.00020118	-0.55217	-0.00025994	470.76394032290005	12.159	0.14023	12.159	12.068	12.208	0					5	3	2	0	0	0	0.061298	1	2658	2658		91.265	18.386	1	289470			14434	3635	9250	9285	14648	14648					0.04160303128992382
GTHKGAIEK	9	Unmodified	_GTHKGAIEK_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7641906738281	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.087	1	12.087	11.587	12.587	0								0	0	0	0.10319	1	2491	2491		70.816	8.7088	1				14435	3635	9250	9285	14649	14649					0.04160303128992382
GTHSAKDAKL	10	Unmodified	_GTHSAKDAKL_					0	0	0		GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant;nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant	GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.1889953613281	3	343.189212	1026.54581	-0.060906	-2.0902E-05	-0.33409	-0.00011466	-0.395	-0.00013556	343.18916285223924	17.916	0.10608	17.916	17.863	17.969	0					4	2	2	0	0	0	0.65213	1	4582	4582		26.063	1.8606	1	139360			14436	1276	9251	9286	14650	14650					0.033596708121422125
GTHTRRHVV	9	Unmodified	_GTHTRRHVV_					0	0	0			REV__ENSG00000198131|ENST00000687789|ZNF544	REV__ENSG00000198131|ENST00000687789|ZNF544	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.801025390625	2	531.799406	1061.58426	3.4163	0.0018168	0.04584	2.4378E-05	3.4621	0.0018412	531.7993432757041	30.705	0.36864	30.705	30.545	30.913	0					20	7	4	0	0	0	0.22377	1	11384	11384		58.782	9.3404	1	3900700	+		14437	17383	9252	9287	14651	14651					0.05593021237314133
GTIAGLNVLR	10	Unmodified	_GTIAGLNVLR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.3087463378906	2	507.308741	1012.60293	-0.088504	-4.4899E-05	-0.092164	-4.6755E-05	-0.18067	-9.1654E-05	507.3086944988171	39.686	0.11307	39.686	39.619	39.732	0					10	6	2	0	0	0	0.45669	1	12873	12873		54.776	13.998	1	50500			14438	2601	9253	9288	14652	14652					0.09713138088511641
GTIAGLNVLR	10	Unmodified	_GTIAGLNVLR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.3074951171875	2	507.308741	1012.60293	-0.031776	-1.612E-05	-1.6311	-0.00082748	-1.6629	-0.0008436	507.3088067917979	40.003	0.26989	40.003	39.908	40.178	0					24	10	4	0	0	0	0.46192	1	15222	15222		53.089	7.137	1	289840			14439	2601	9253	9288	14653	14653					0.09713138088511641
GTIAGLNVLR	10	Unmodified	_GTIAGLNVLR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.3085632324219	2	507.308741	1012.60293	-0.37437	-0.00018992	0.39175	0.00019874	0.017382	8.8182E-06	507.30891453572076	39.954	0.17816	39.954	39.901	40.079	0					13	6	3	0	0	0	0.1725	1	15722	15722		90.601	20.973	1	321500			14440	2601	9253	9288	14654	14654					0.09713138088511641
GTIAKSGTK	9	Unmodified	_GTIAKSGTK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.7532653808594	2	431.753267	861.491981	-0.48837	-0.00021085	0.25446	0.00010986	-0.2339	-0.00010099	431.75344547660274	11.981	0.070984	11.981	11.936	12.007	0					4	2	2	0	0	0	0.19952	1	2431	2431		61.691	15.719	1	26952			14441	1647;1916	9254	9289	14655	14655					0.05569498380441473
GTIAKSGTK	9	Unmodified	_GTIAKSGTK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.75335693359375	2	431.753267	861.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.778	1	11.778	11.278	12.278	0								0	0	0	0.077333	1	2299	2299		78.264	26.928	1				14442	1647;1916	9254	9289	14656	14656					0.05569498380441473
GTIAKSGTK	9	Unmodified	_GTIAKSGTK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.75299072265625	2	431.753267	861.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.043	1	12.043	11.543	12.543	0								0	0	0	0.0018316	1	2614	2614		186.41	43.304	1				14443	1647;1916	9254	9289	14657	14657					0.05569498380441473
GTIAKSGTK	9	Unmodified	_GTIAKSGTK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7532043457031	2	431.753267	861.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.993	1	11.993	11.493	12.493	0								0	0	0	0.024296	1	2447	2447		98.582	16.341	1				14444	1647;1916	9254	9289	14658	14658					0.05569498380441473
GTIDKTKNNK	10	Unmodified	_GTIDKTKNNK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;GUF1|p.L162Yfs*15|1|0.15|ENSG00000151806|chr4:44681178-44681178|T/-|frameshift_variant;GUF1|p.P246Sfs*2|1|0.21|ENSG00000151806|chr4:44686017-44686018|-/C|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.812744140625	2	559.811845	1117.60914	1.7829	0.00099812	0.31116	0.00017419	2.0941	0.0011723	559.8122419163473	11.291	0.094421	11.291	11.228	11.322	0					7	4	2	0	0	0	0.041742	1	2272	2272		112.11	37.942	1	126390			14445	4987	9255	9290	14659	14659					0.05503611529388763
GTIDVKELK	9	Unmodified	_GTIDVKELK_					0	0	0		ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.7951965332031	2	501.795132	1001.57571	-0.043545	-2.1851E-05	-0.29054	-0.00014579	-0.33409	-0.00016764	501.79470583481947	26.207	0.089233	26.207	26.13	26.219	0					6	3	2	0	0	0	0.085655	1	7932	7932		82.75	20.643	1	90046			14446	4777	9256	9291	14660	14660					0.07498609757465147
GTIDVKELK	9	Unmodified	_GTIDVKELK_					0	0	0		ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.795166015625	2	501.795132	1001.57571	-0.089799	-4.5061E-05	0.22906	0.00011494	0.13926	6.988E-05	501.795254316829	26.448	0.22142	26.448	26.314	26.535	0					9	5	2	0	0	0	0.026848	1	9132	9132		112.11	10.855	1	666500			14447	4777	9256	9291	14661	14661					0.07498609757465147
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.58721923828125	3	406.586972	1216.73909	1.6885	0.00068652	-1.613	-0.00065583	0.075477	3.0688E-05	406.5863445961996	19.621	0.15911	19.621	19.535	19.695	0					12	4	4	0	0	0	0.11546	1	5103	5103		85.924	27.294	1	560140			14448	4616	9257	9292	14662	14662					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.376953125	2	609.37682	1216.73909	0.15729	9.5846E-05	0.0011193	6.821E-07	0.15841	9.6528E-05	609.3767386555884	19.602	0.15602	19.602	19.517	19.673	0					11	4	4	0	0	0	4.564E-05	1	5105	5105		171.33	88.58	1	676430			14449	4616	9257	9292	14663	14663					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.3768920898438	2	609.37682	1216.73909	-0.67815	-0.00041325	0.6137	0.00037397	-0.064451	-3.9275E-05	609.3771187464483	19.963	0.25858	19.963	19.852	20.11	0					13	5	4	0	0	0	3.5163E-08	1	6102	6102		194.12	73.811	1	3248400			14450	4616	9257	9292	14664	14664					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.3765869140625	2	609.37682	1216.73909	-0.62175	-0.00037888	1.1827	0.00072074	0.561	0.00034186	609.3774425113792	19.656	0.15013	19.656	19.586	19.737	0					10	5	3	0	0	0	0.00052769	1	5357	5357		156.16	70.299	1	311100			14451	4616	9257	9292	14665	14665					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.3759765625	2	609.37682	1216.73909	0.46388	0.00028268	-0.89136	-0.00054318	-0.42748	-0.0002605	609.3758439938194	19.655	0.10751	19.655	19.575	19.682	0					5	3	2	0	0	0	0.24228	1	5364	5364		77.533	32.511	1	73023			14452	4616	9257	9292	14666	14666					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.5867919921875	3	406.586972	1216.73909	0.047463	1.9298E-05	-0.35878	-0.00014587	-0.31132	-0.00012658	406.5868420541959	19.834	0.31967	19.834	19.726	20.045	0					21	6	5	0	0	0	0.013225	1	6321	6321		123.62	62.928	1	3453000			14453	4616	9257	9292	14667	14667					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.3767700195312	2	609.37682	1216.73909	0.84575	0.00051538	-0.98699	-0.00060145	-0.14124	-8.6069E-05	609.3761851730416	19.817	0.26856	19.817	19.71	19.978	0					9	5	3	0	0	0	1.5178E-08	1	6339	6339		188.91	63.199	1	3204700			14454	4616	9257	9292	14668	14668					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.376953125	2	609.37682	1216.73909	0.50977	0.00031064	-0.4283	-0.000261	0.081469	4.9645E-05	609.3766685435768	19.8	0.11836	19.8	19.741	19.859	0					6	2	3	0	0	0	3.3481E-13	1	6329	6329		209.73	100.25	1	581060			14455	4616	9257	9292	14669	14669					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.5867919921875	3	406.586972	1216.73909	-0.56305	-0.00022893	0.31279	0.00012718	-0.25025	-0.00010175	406.58699008630595	19.85	0.22001	19.85	19.741	19.961	0					11	4	4	0	0	0	0.31079	1	6218	6218		61.419	30.85	1	1259000			14456	4616	9257	9292	14670	14670					0.1393878780850173
GTIEVSVVK	9	Unmodified	_GTIEVSVVK_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant;ENST00000512630.5_1_4:143191861-143226631:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.27679443359375	2	466.276575	930.538597	0.43664	0.0002036	2.5356	0.0011823	2.9722	0.0013859	466.2772767543617	30.067	0.20628	30.067	29.972	30.178	0					11	5	3	0	0	0	0.16806	1	10809	10809		65.465	5.3471	1	234270			14457	2576	9258	9293	14671	14671					0.07054938211729223
GTIEVSVVK	9	Unmodified	_GTIEVSVVK_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant;ENST00000512630.5_1_4:143191861-143226631:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2763366699219	2	466.276575	930.538597	-0.13491	-6.2904E-05	-0.4392	-0.00020479	-0.57411	-0.00026769	466.2763462163176	30.224	0.4681	30.224	29.916	30.384	0					16	10	3	0	0	0	0.12834	1	11187	11187		72.879	1.0018	1	498420			14458	2576	9258	9293	14672	14672					0.07054938211729223
GTIEVSVVK	9	Unmodified	_GTIEVSVVK_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant;ENST00000512630.5_1_4:143191861-143226631:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.27679443359375	2	466.276575	930.538597	-0.49837	-0.00023238	1.8134	0.00084556	1.3151	0.00061318	466.27743340487194	29.987	0.31765	29.987	29.896	30.214	0					11	6	2	0	0	0	0.037924	1	11046	11046		101.25	26.209	1	233860			14459	2576	9258	9293	14673	14673					0.07054938211729223
GTIFAELATKK	11	Unmodified	_GTIFAELATKK_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.8436279296875	2	589.842613	1177.67067	-0.13281	-7.8335E-05	1.24	0.0007314	1.1072	0.00065306	589.8433413696511	35.981	0.14218	35.981	35.91	36.052	0					10	4	3	0	0	0	0.37395	1	13974	13974		53.089	17.937	1	147850			14460	6226	9259	9294	14674	14674					0.0889454322864367
GTIFGIYRK	9	Unmodified	_GTIFGIYRK_					0	0	0		FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.8058471679688	2	527.805834	1053.59712	0.10628	5.6098E-05	0.5499	0.00029024	0.65618	0.00034634	527.8060717034659	33.116	0.48888	33.116	33.009	33.497	0					35	13	3	0	0	0	0.13267	1	12208	12208		71.877	0.58177	1	1240300			14461	5766	9260	9295	14675	14675					0.07246039576853036
GTIFGIYRK	9	Unmodified	_GTIFGIYRK_					0	0	0		FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.8056030273438	2	527.805834	1053.59712	0.5188	0.00027382	0.18072	9.5388E-05	0.69952	0.00036921	527.8056756772223	32.933	0.20432	32.933	32.868	33.072	0					13	8	2	0	0	0	0.26904	1	11016	11016		53.351	17.733	1	107400			14462	5766	9260	9295	14676	14676					0.07246039576853036
GTIFGIYRK	9	Unmodified	_GTIFGIYRK_					0	0	0		FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.8060302734375	2	527.805834	1053.59712	0.28497	0.00015041	0.12733	6.7208E-05	0.41231	0.00021762	527.8058551825532	33.112	0.44535	33.112	32.987	33.433	0					26	10	3	0	0	0	0.12239	1	12623	12623		74.255	28.283	1	682060			14463	5766	9260	9295	14677	14677					0.07246039576853036
GTIGDMMQK	9	Unmodified	_GTIGDMMQK_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.73016357421875	2	490.73062	979.446687	-0.13282	-6.518E-05	-0.14133	-6.9353E-05	-0.27415	-0.00013453	490.73054736258246	30.026	0.22159	30.026	29.928	30.149	0					13	8	2	0	0	0	0.056004	1	9522	9522		93.143	38.379	1	335180			14464	2501	9261	9296	14678	14678					-0.0438581146861452
GTIGDMMQK	9	Unmodified	_GTIGDMMQK_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7301330566406	2	490.73062	979.446687	0.81704	0.00040095	-1.7105	-0.0008394	-0.89347	-0.00043845	490.7299868461017	30.286	0.36971	30.286	30.167	30.537	0					19	9	3	0	0	0	0.013878	2	10899	10899;10915		132.76	50.517	1	1233800			14465	2501	9261	9296	14679;14680	14679					-0.0438581146861452
GTIGDMMQK	9	Unmodified	_GTIGDMMQK_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7305908203125	2	490.73062	979.446687	-1.2582	-0.00061742	0.60993	0.00029931	-0.64824	-0.00031811	490.7311403269602	30.053	0.26891	30.053	29.984	30.252	0					25	10	4	0	0	0	0.012231	1	9840	9840		136.27	58.951	1	397550			14466	2501	9261	9296	14681	14681					-0.0438581146861452
GTIGDMMQK	9	Unmodified	_GTIGDMMQK_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.73040771484375	2	490.73062	979.446687	0.59129	0.00029017	-1.529	-0.00075033	-0.93772	-0.00046017	490.7301291250042	30.309	0.33388	30.309	30.179	30.513	0					15	7	3	0	0	0	0.0080613	1	11327	11327		145.16	78.726	1	2363300			14467	2501	9261	9296	14682	14682					-0.0438581146861452
GTIGDMMQK	9	Unmodified	_GTIGDMMQK_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.72967529296875	2	490.73062	979.446687	-0.094908	-4.6574E-05	-0.98547	-0.0004836	-1.0804	-0.00053017	490.7302383262162	30.068	0.22526	30.068	29.971	30.197	0					11	5	3	0	0	0	0.11898	1	10187	10187		75.043	14.925	1	298760			14468	2501	9261	9296	14683	14683					-0.0438581146861452
GTIGDMMQK	9	Unmodified	_GTIGDMMQK_					0	0	0		ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENSG00000107874|ENST00000369937|CUEDC2	ENSG00000107874|ENST00000369937|CUEDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7304382324219	2	490.73062	979.446687	0.7869	0.00038616	-1.8638	-0.0009146	-1.0769	-0.00052845	490.72996224621187	30.238	0.31014	30.238	30.131	30.441	0					15	6	3	0	0	0	0.0049871	1	11181	11181		158.07	58.7	1	2259100			14469	2501	9261	9296	14684	14684					-0.0438581146861452
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.769287109375	2	488.769783	975.525013	-0.025665	-1.2544E-05	-0.86328	-0.00042194	-0.88894	-0.00043449	488.76932224079155	14.203	0.17377	14.203	14.157	14.331	0					14	7	3	0	0	0	0.097781	1	2892	2892		95.815	42.464	1	406940			14470	3666	9262	9297	14685	14685					0.03627125223135863
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7694396972656	2	488.769783	975.525013	-0.40764	-0.00019924	-0.20099	-9.8239E-05	-0.60863	-0.00029748	488.76968719122596	14.531	0.62386	14.531	14.445	15.068	0					24	15	3	0	0	0	0.021567	1	3565	3565		124.08	58.277	1	5156300			14471	3666	9262	9297	14686	14686					0.03627125223135863
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7696838378906	2	488.769783	975.525013	-1.1106	-0.00054282	0.67981	0.00033227	-0.43078	-0.00021055	488.7700522559411	14.219	0.073667	14.219	14.178	14.252	0					8	3	3	0	0	0	0.097781	1	3036	3036		95.815	41.039	1	515360			14472	3666	9262	9297	14687	14687					0.03627125223135863
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7696838378906	2	488.769783	975.525013	-0.71192	-0.00034796	0.40399	0.00019746	-0.30793	-0.00015051	488.77004367388787	14.488	0.29351	14.488	14.437	14.731	0					12	6	3	0	0	0	0.021567	1	3774	3774		124.08	55.293	1	1864900			14473	3666	9262	9297	14688	14688					0.03627125223135863
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7696533203125	2	488.769783	975.525013	-2.8947	-0.0014148	3.1371	0.0015333	0.24249	0.00011852	488.77121538401184	14.276	0.13747	14.276	14.232	14.37	0					13	5	3	0	0	0	0.033694	1	2987	2987		115.49	53.387	1	328900			14474	3666	9262	9297	14689	14689					0.03627125223135863
GTIGKKFAR	9	Unmodified	_GTIGKKFAR_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2980651855469	2	489.298176	976.581799	0.78354	0.00038338	-1.3522	-0.00066161	-0.56863	-0.00027823	489.29752008456	17.464	0.20069	17.464	17.39	17.59	0					12	5	3	0	0	0	0.032383	1	4923	4923		90.37	34.866	1	718680			14475	4014	9263	9298	14690	14690					0.0925717277965532
GTIGKKFAR	9	Unmodified	_GTIGKKFAR_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2982177734375	2	489.298176	976.581799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.228	1	17.228	16.728	17.728	0								0	0	0	0.20989	1	4251	4251		42.396	10.441	1				14476	4014	9263	9298	14691	14691					0.0925717277965532
GTIGKKFAR	9	Unmodified	_GTIGKKFAR_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	326.5345458984375	3	326.534543	976.581799	-1.9065	-0.00062254	1.8131	0.00059203	-0.093424	-3.0506E-05	326.5352204484059	17.187	0.14782	17.187	17.156	17.303	0					5	4	2	0	0	0	0.47473	1	4238	4238		35.152	11.629	1	117920			14477	4014	9263	9298	14692	14692					0.0925717277965532
GTIGKKFAR	9	Unmodified	_GTIGKKFAR_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2980651855469	2	489.298176	976.581799	-0.51588	-0.00025242	0.1082	5.294E-05	-0.40768	-0.00019948	489.29821007392815	17.387	0.20488	17.387	17.293	17.498	0					7	4	2	0	0	0	0.037712	1	5016	5016		95.815	31.608	1	832170			14478	4014	9263	9298	14693	14693					0.0925717277965532
GTIGKKFARK	10	Unmodified	_GTIGKKFARK_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.2327880859375	3	369.232864	1104.67676	1.0428	0.00038502	-1.1641	-0.00042982	-0.12132	-4.4794E-05	369.23247610232465	15.82	0.21068	15.82	15.719	15.93	0					13	4	4	0	0	0	0.52707	1	4415	4415		54.722	24.405	1	622540			14479	4014	9264	9299	14694	14694					0.12861106250829835
GTIGKKFARK	10	Unmodified	_GTIGKKFARK_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.2327880859375	3	369.232864	1104.67676	0.88791	0.00032784	-0.99548	-0.00036756	-0.10757	-3.9718E-05	369.2325050371058	15.84	0.26572	15.84	15.731	15.997	0					12	5	3	0	0	0	0.52707	1	4277	4277		63.534	34.364	1	1098400			14480	4014	9264	9299	14695	14695					0.12861106250829835
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.2718505859375	2	436.271627	870.528701	-0.27617	-0.00012048	0.016898	7.3722E-06	-0.25927	-0.00011311	436.2715774628782	34.728	0.18143	34.728	34.655	34.836	0					12	8	2	0	0	0	0.037569	1	11362	11362		101.6	16.685	1	143480			14481	10036	9265	9300	14696	14696					0.0882579499698295
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2715148925781	2	436.271627	870.528701	-0.41303	-0.00018019	-0.1583	-6.9061E-05	-0.57133	-0.00024925	436.2715696083732	35.03	0.28769	35.03	34.904	35.192	0					16	7	3	0	0	0	0.0073253	1	13088	13088		148.04	31.139	1	609250			14482	10036	9265	9300	14697	14697					0.0882579499698295
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.2713928222656	2	436.271627	870.528701	-0.88243	-0.00038498	0.09225	4.0246E-05	-0.79019	-0.00034474	436.2716192991692	34.809	0.1808	34.809	34.697	34.878	0					13	8	2	0	0	0	0.01768	1	11756	11756		125.81	26.439	1	108640			14483	10036	9265	9300	14698	14698					0.0882579499698295
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.27117919921875	2	436.271627	870.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.789	1	34.789	34.289	35.289	0								0	0	0	0.029117	1	11747	11747		96.19	16.739	1				14484	10036	9265	9300	14699	14699					0.0882579499698295
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.2715148925781	2	436.271627	870.528701	0.34172	0.00014908	-0.84042	-0.00036665	-0.4987	-0.00021757	436.2713294844684	34.994	0.26588	34.994	34.912	35.178	0					16	7	3	0	0	0	0.012915	1	13534	13534		134.81	30.064	1	381810			14485	10036	9265	9300	14700	14700					0.0882579499698295
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2732849121094	2	437.273835	872.533118	-0.27848	-0.00012177	-0.25201	-0.0001102	-0.53049	-0.00023197	437.2736723936879	32.419	0.24173	32.419	32.339	32.581	0					21	10	3	0	0	0	0.056004	1	10468	10468		93.143	21.266	1	324510			14486	2774	9266	9301	14701	14701					0.0917525941989652
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2738342285156	2	437.273835	872.533118	-0.39889	-0.00017442	-0.050706	-2.2172E-05	-0.4496	-0.0001966	437.27379615639603	32.705	0.33244	32.705	32.611	32.943	0					20	8	3	0	0	0	0.0025054	1	12025	12025		171.53	40.5	1	1406600			14487	2774	9266	9301	14702	14702					0.0917525941989652
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2738952636719	2	437.273835	872.533118	-0.92313	-0.00040366	0.044339	1.9388E-05	-0.87879	-0.00038427	437.27390015623905	32.481	0.1896	32.481	32.365	32.555	0					12	7	2	0	0	0	0.13267	1	10830	10830		71.877	29.013	1	80654			14488	2774	9266	9301	14703	14703					0.0917525941989652
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2738342285156	2	437.273835	872.533118	-1.0275	-0.00044928	0.47724	0.00020868	-0.55023	-0.0002406	437.274054957485	32.479	0.21365	32.479	32.379	32.592	0					14	8	2	0	0	0	0.063171	1	10826	10826		90.601	20.973	1	142840			14489	2774	9266	9301	14704	14704					0.0917525941989652
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2735290527344	2	437.273835	872.533118	0.298	0.00013031	-0.66594	-0.0002912	-0.36794	-0.00016089	437.27349879396627	32.674	0.29185	32.674	32.542	32.834	0					17	7	3	0	0	0	0.026538	1	12412	12412		112.41	32.698	1	891280			14490	2774	9266	9301	14705	14705					0.0917525941989652
GTIGMRPNAK	10	Unmodified	_GTIGMRPNAK_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7857055664062	2	522.784576	1043.5546	1.5205	0.00079487	-1.1858	-0.00061991	0.33468	0.00017496	522.7842799144267	18.615	0.097422	18.615	18.568	18.665	0					8	3	3	0	0	0	0.39827	1	4657	4657		56.434	8.7765	1	124480			14491	3474	9267	9302	14706	14706					0.03456321176940946
GTIIVSGSTEK	11	Unmodified	_GTIIVSGSTEK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.301025390625	2	546.300778	1090.587	1.2085	0.0006602	-1.3375	-0.00073069	-0.12904	-7.0492E-05	546.2998474210125	23.868	0.22699	23.868	23.798	24.025	0					19	8	3	0	0	0	0.17294	1	6951	6951		77.533	22.029	1	296150			14492	2863	9268	9303	14707	14707					0.04533387060973837
GTIIVSGSTEK	11	Unmodified	_GTIIVSGSTEK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3010864257812	2	546.300778	1090.587	0.42698	0.00023326	-1.1754	-0.00064213	-0.74844	-0.00040887	546.300145809111	24.171	0.23012	24.171	24.079	24.309	0					15	5	3	0	0	0	0.0010046	1	8109	8109		133.75	51.512	1	1173500			14493	2863	9268	9303	14708	14708					0.04533387060973837
GTIIVSGSTEK	11	Unmodified	_GTIIVSGSTEK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3012084960938	2	546.300778	1090.587	0.48396	0.00026439	-1.0948	-0.00059808	-0.61082	-0.00033369	546.3002796165088	23.909	0.23617	23.909	23.827	24.064	0					16	8	2	0	0	0	0.024591	1	7237	7237		117.71	54.172	1	155510			14494	2863	9268	9303	14709	14709					0.04533387060973837
GTIIVSGSTEK	11	Unmodified	_GTIIVSGSTEK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3012084960938	2	546.300778	1090.587	1.8778	0.0010258	-1.8308	-0.0010002	0.046994	2.5673E-05	546.2994641093894	24.104	0.31516	24.104	23.995	24.31	0					14	6	3	0	0	0	0.004134	1	8404	8404		128.35	55.469	1	956950			14495	2863	9268	9303	14710	14710					0.04533387060973837
GTIIVSGSTEK	11	Unmodified	_GTIIVSGSTEK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.3009643554688	2	546.300778	1090.587	3.7842	0.0020673	-4.0916	-0.0022353	-0.30738	-0.00016792	546.298262678508	24.105	0.26566	24.105	23.996	24.262	0					17	5	4	0	0	0	0.061126	1	8281	8281		99.788	39.67	1	1790700			14496	2863	9268	9303	14711	14711					0.04533387060973837
GTIKDIVTR	9	Unmodified	_GTIKDIVTR_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8004150390625	2	501.800749	1001.58694	0.043864	2.2011E-05	-0.54114	-0.00027155	-0.49728	-0.00024954	501.8004496933003	26.092	0.46004	26.092	25.983	26.443	0					24	9	5	0	0	0	0.022698	1	9284	9284		117.53	44.646	1	2767300			14497	7347	9269	9304	14712	14712					0.08621431851611305
GTIKDIVTR	9	Unmodified	_GTIKDIVTR_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.800537109375	2	501.800749	1001.58694	-0.33959	-0.00017041	-0.045178	-2.2671E-05	-0.38477	-0.00019308	501.8006238740016	25.924	0.28019	25.924	25.789	26.069	0					6	4	2	0	0	0	0.061298	1	8283	8283		91.265	13.948	1	528610			14498	7347	9269	9304	14713	14713					0.08621431851611305
GTIKDIVTR	9	Unmodified	_GTIKDIVTR_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.80047607421875	2	501.800749	1001.58694	-0.5548	-0.0002784	0.00053028	2.661E-07	-0.55427	-0.00027814	501.8007473581896	26.057	0.59822	26.057	25.667	26.265	0					27	10	4	0	0	0	0.052435	1	9145	9145		94.409	21.53	1	4001000			14499	7347	9269	9304	14714	14714					0.08621431851611305
GTIKPAFNQ	9	Unmodified	_GTIKPAFNQ_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2648010253906	2	488.266542	974.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.828	1	13.828	13.328	14.328	0								0	0	0	0.091069	1	2761	2761		74.255	6.7614	1				14500	5443	9270	9305	14715	14715					0.030251872717599326
GTILGTRSLK	10	Unmodified	_GTILGTRSLK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3218383789062	2	523.321848	1044.62914	-0.00084113	-4.4018E-07	0.19664	0.0001029	0.1958	0.00010246	523.3219065749621	25.956	0.34728	25.956	25.67	26.017	0					9	5	3	0	0	0	0.12383	1	9225	9225		91.265	16.222	1	191940			14501	5610	9271	9306	14716	14716					0.10861407259972111
GTILSNVLK	9	Unmodified	_GTILSNVLK_					0	0	0		nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.79248046875	2	472.792392	943.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.427	1	22.427	21.927	22.927	0								0	0	0	0.36609	1	6340	6340		20.947	0.95016	1				14502	2671	9272	9307	14717	14717					0.09618930965655181
GTINDISVLRV	11	Unmodified	_GTINDISVLRV_					0	0	0		ENST00000416949.5_1_17:41109156-41116489:-|nuORF;ENST00000441280.7_1_17:41108193-41116457:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1	ENST00000416949.5_1_17:41109156-41116489:-|nuORF	ENST00000416949.5_1_17:41109156-41116489:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.2310791015625	3	396.231189	1185.67174	0.5997	0.00023762	-0.76833	-0.00030443	-0.16862	-6.6813E-05	396.23085660428944	16.422	0.31622	16.422	16.313	16.63	0					17	6	4	0	0	0	0.59204	1	4700	4700		37.508	3.4217	1	2983400			14503	8073	9273	9308	14718	14718					0.08632757597547425
GTINIVHPK	9	Unmodified	_GTINIVHPK_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7898864746094	2	489.790184	977.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.162	1	23.162	22.662	23.662	0								0	0	0	0.17415	1	6660	6660		56.721	14.325	1				14504	3961	9274	9309	14719	14719					0.07613466542750302
GTINIVHPK	9	Unmodified	_GTINIVHPK_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7899475097656	2	489.790184	977.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.541	1	23.541	23.041	24.041	0								0	0	0	0.11159	1	7809	7809		71.877	17.101	1				14505	3961	9274	9309	14720	14720					0.07613466542750302
GTINIVHPK	9	Unmodified	_GTINIVHPK_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7898864746094	2	489.790184	977.565815	-0.72002	-0.00035266	-1.3166	-0.00064484	-2.0366	-0.0009975	489.79024437916206	23.484	0.26642	23.484	23.279	23.545	0					13	5	3	0	0	0	0.10506	1	8065	8065		71.877	5.4482	1	297030			14506	3961	9274	9309	14721	14721					0.07613466542750302
GTIPQIFGK	9	Unmodified	_GTIPQIFGK_					0	0	0		ENST00000544349.5_1_12:122735394-122750988:-|nuORF;VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.77899169921875	2	480.779285	959.544017	-0.16369	-7.8699E-05	-3.363	-0.0016169	-3.5267	-0.0016956	480.77742628798285	40.208	0.27837	40.208	40.126	40.405	0					18	12	2	0	0	0	0.35021	1	15364	15364		45.972	5.1941	1	73134			14507	4348	9275	9310	14722	14722					0.0626266179419872
GTISAITSK	9	Unmodified	_GTISAITSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2528991699219	2	439.2531	876.491647	0.27044	0.00011879	-0.61656	-0.00027082	-0.34612	-0.00015203	439.2528516402185	24.098	0.33357	24.098	23.986	24.32	0					24	10	4	0	0	0	0.0016668	1	7089	7089		176.44	66.325	1	2965000			14508	4655	9276	9311	14723	14723					0.048460786605687645
GTISAITSK	9	Unmodified	_GTISAITSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.25299072265625	2	439.2531	876.491647	-0.28277	-0.00012421	-0.15931	-6.9978E-05	-0.44208	-0.00019419	439.2530542328042	24.092	0.36539	24.092	23.978	24.343	0					26	11	4	0	0	0	0.0059092	1	7051	7051		154.12	52.518	1	1867400			14509	4655	9276	9311	14724	14724					0.048460786605687645
GTISAITSK	9	Unmodified	_GTISAITSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.25286865234375	2	439.2531	876.491647	-0.36998	-0.00016252	-0.056349	-2.4751E-05	-0.42633	-0.00018727	439.25305220251107	24.396	0.62099	24.396	24.204	24.825	0					38	14	5	0	0	0	0.00026591	1	8218	8218		190.26	59.23	1	8967100			14510	4655	9276	9311	14725	14725					0.048460786605687645
GTISAITSK	9	Unmodified	_GTISAITSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2528076171875	2	439.2531	876.491647	0.62675	0.0002753	-1.2122	-0.00053248	-0.5855	-0.00025718	439.25265030809703	24.352	0.8112	24.352	24.096	24.907	0					48	16	5	0	0	0	0.0016668	1	8503	8503		176.44	57.702	1	25416000			14511	4655	9276	9311	14726	14726					0.048460786605687645
GTISAITSK	9	Unmodified	_GTISAITSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2530517578125	2	439.2531	876.491647	0.32966	0.0001448	0.099197	4.3573E-05	0.42886	0.00018838	439.25320000445095	24.195	0.15751	24.195	24.093	24.251	0					7	3	3	0	0	0	0.0067848	1	7495	7495		150.36	31.619	1	281100			14512	4655	9276	9311	14727	14727					0.048460786605687645
GTISAITSK	9	Unmodified	_GTISAITSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2529296875	2	439.2531	876.491647	-0.58978	-0.00025906	0.11209	4.9238E-05	-0.47768	-0.00020982	439.25314653364114	24.181	0.36076	24.181	24.078	24.439	0					19	8	4	0	0	0	1.3754E-05	1	7485	7485		204.62	60.738	1	3874500			14513	4655	9276	9311	14728	14728					0.048460786605687645
GTISAITSK	9	Unmodified	_GTISAITSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.2528076171875	2	439.2531	876.491647	-0.56733	-0.0002492	0.011395	5.0051E-06	-0.55594	-0.0002442	439.25307041803507	24.338	0.31785	24.338	24.229	24.547	0					16	6	4	0	0	0	0.00026591	1	8391	8391		190.26	46.375	1	2947600			14514	4655	9276	9311	14729	14729					0.048460786605687645
GTISSMYQTK	10	Unmodified	_GTISSMYQTK_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.2745361328125	2	558.273706	1114.53286	1.2922	0.00072139	-1.361	-0.0007598	-0.068801	-3.841E-05	558.2733870110982	27.58	0.12185	27.58	27.492	27.614	0					6	4	2	0	0	0	0.68194	1	8524	8524		24.232	2.5461	1	52311			14515	4036	9277	9312	14730	14730					-0.0198252836228221
GTISSMYQTK	10	Unmodified	_GTISSMYQTK_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2741088867188	2	558.273706	1114.53286	-0.14962	-8.3527E-05	0.36243	0.00020234	0.21281	0.00011881	558.2741434364516	27.838	0.16703	27.838	27.73	27.897	0					8	3	3	0	0	0	0.023179	1	10121	10121		122.94	48.964	1	313190			14516	4036	9277	9312	14731	14731					-0.0198252836228221
GTITPKISK	9	Unmodified	_GTITPKISK_					0	0	0		nc|ENSG00000154175|Q7Z7G0|ABI3BP;ABI3BP|p.K701Sfs*41|1|0.1|ENSG00000154175|chr3:100780137-100780137|T/-|frameshift_variant;ENSG00000154175|ENST00000471714|ABI3BP	nc|ENSG00000154175|Q7Z7G0|ABI3BP	nc|ENSG00000154175|Q7Z7G0|ABI3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7919921875	2	472.792392	943.570232	-0.68915	-0.00032582	0.1132	5.3518E-05	-0.57595	-0.00027231	472.7925222989938	20.558	0.31366	20.558	20.348	20.662	0					14	6	3	0	0	0	0.056004	1	6691	6691		93.143	2.7734	1	274190			14517	21	9278	9313	14732	14732					0.09618930965655181
GTIVTAQTK	9	Unmodified	_GTIVTAQTK_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;NCOA3|p.P467Hfs*15|1|0.2|ENSG00000124151|chr20:47635604-47635604|C/-|frameshift_variant	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7663269042969	2	459.766374	917.518196	-2.5906	-0.0011911	2.512	0.0011549	-0.078672	-3.6171E-05	459.7675011746225	19.568	0.094997	19.568	19.522	19.617	0					4	2	2	0	0	0	0.067603	1	5348	5348		89.029	18.213	1	70476			14518	3347	9279	9314	14733	14733					0.05613767551915316
GTIYGAQQL	9	Unmodified	_GTIYGAQQL_					0	0	0			REV__ARSG|p.V131I|2|0.19|ENSG00000141337|chr17:68343776-68343776|G/A|missense_variant	REV__ARSG|p.V131I|2|0.19|ENSG00000141337|chr17:68343776-68343776|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7503967285156	2	475.750724	949.486896	0.6235	0.00029663	-1.0855	-0.00051645	-0.46205	-0.00021982	475.7501476033757	42.637	0.1821	42.637	42.559	42.742	0					13	9	2	0	0	0	0.24095	1	16720	16720		56.721	7.185	1	209820	+		14519	12227	9280	9315	14734	14734					0.010131945178045498
GTKAQVERK	9	Unmodified	_GTKAQVERK_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R;ENST00000335772.3_1_1:160972398-160990872:-|nuORF;ENST00000602966.1_1_1:160970859-160990872:-|nuORF	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5327453613281	3	339.533091	1015.57744	0.6686	0.00022701	-0.66962	-0.00022736	-0.0010113	-3.4338E-07	339.532801754472	11.687	0.091848	11.687	11.603	11.695	0					7	3	3	0	0	0	0.25761	1	2298	2298		70.399	10.468	1	111740			14520	5282	9281	9316	14735	14735					0.07027663566088904
GTKAQVERK	9	Unmodified	_GTKAQVERK_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R;ENST00000335772.3_1_1:160972398-160990872:-|nuORF;ENST00000602966.1_1_1:160970859-160990872:-|nuORF	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7959899902344	2	508.795998	1015.57744	-0.02184	-1.1112E-05	-0.21149	-0.0001076	-0.23333	-0.00011872	508.79587966374123	11.682	0.086836	11.682	11.625	11.712	0					7	3	3	0	0	0	0.015992	1	2303	2303		128.6	32.569	1	396380			14521	5282	9281	9316	14736	14736					0.07027663566088904
GTKAQVERK	9	Unmodified	_GTKAQVERK_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R;ENST00000335772.3_1_1:160972398-160990872:-|nuORF;ENST00000602966.1_1_1:160970859-160990872:-|nuORF	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7959289550781	2	508.795998	1015.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.716	1	11.716	11.216	12.216	0								0	0	0	0.02816	1	2469	2469		96.665	3.5218	1				14522	5282	9281	9316	14737	14737					0.07027663566088904
GTKAQVERK	9	Unmodified	_GTKAQVERK_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R;ENST00000335772.3_1_1:160972398-160990872:-|nuORF;ENST00000602966.1_1_1:160970859-160990872:-|nuORF	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.5331115722656	3	339.533091	1015.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.685	1	11.685	11.185	12.185	0								0	0	0	0.17415	1	2319	2319		70.399	22.439	1				14523	5282	9281	9316	14738	14738					0.07027663566088904
GTKAQVERK	9	Unmodified	_GTKAQVERK_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R;ENST00000335772.3_1_1:160972398-160990872:-|nuORF;ENST00000602966.1_1_1:160970859-160990872:-|nuORF	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7969665527344	2	508.795998	1015.57744	2.9891	0.0015208	-2.2832	-0.0011617	0.70586	0.00035914	508.7948346448749	11.683	0.11964	11.683	11.601	11.721	0					10	5	3	0	0	0	0.052435	1	2313	2313		94.409	0.81155	1	527480			14524	5282	9281	9316	14739	14739					0.07027663566088904
GTKEDVDVLK	10	Unmodified	_GTKEDVDVLK_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.300537109375	2	552.300778	1102.587	0.4624	0.00025538	0.19846	0.00010961	0.66086	0.00036499	552.3010716570373	23.923	0.16604	23.923	23.813	23.979	0					5	3	2	0	0	0	0.13022	1	8297	8297		90.149	30.218	1	194440			14525	1110	9282	9317	14740	14740					0.03981387060935049
GTKEDVDVLK	10	Unmodified	_GTKEDVDVLK_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3010864257812	2	552.300778	1102.587	0.77986	0.00043072	-0.34447	-0.00019025	0.43539	0.00024047	552.3007618606473	23.889	0.21642	23.889	23.78	23.996	0					7	4	2	0	0	0	0.11826	1	8179	8179		92.239	23.393	1	329720			14526	1110	9282	9317	14741	14741					0.03981387060935049
GTKEKKIGF	9	Unmodified	_GTKEKKIGF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53436279296875	3	336.53432	1006.58113	0.24141	8.1243E-05	-0.34792	-0.00011709	-0.10651	-3.5843E-05	336.53416805376844	24.988	1.1898	24.988	24.334	25.524	0					60	37	2	0	0	0	0.5879	1	7378	7378		23.523	0	1	155190	+		14527	13948	9283	9318	14742	14742					0.07810333339955378
GTKEKKIGF	9	Unmodified	_GTKEKKIGF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.8685607910156	3	336.53432	1006.58113	0.24136	8.1226E-05	-0.53401	-0.00017971	-0.29264	-9.8485E-05	336.53416572153844	35.619	0.47768	35.619	35.381	35.859	0					46	24	2	0	0	0	0.5879	1	11688	11688		23.523	9.3856	1	91136	+		14528	13948	9283	9318	14743	14743					0.07810333339955378
GTKEKKIGF	9	Unmodified	_GTKEKKIGF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341796875	3	336.53432	1006.58113	0.24132	8.1213E-05	-0.29827	-0.00010038	-0.056945	-1.9164E-05	336.53416467024516	38.236	0.87955	38.236	37.977	38.856	0					81	51	2	0	0	0	0.61124	1	12454	12454		19.104	4.9664	1	129980	+		14529	13948	9283	9318	14744	14744					0.07810333339955378
GTKEKKIGF	9	Unmodified	_GTKEKKIGF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5339660644531	3	336.53432	1006.58113	0.24145	8.1257E-05	-0.56447	-0.00018996	-0.32302	-0.00010871	336.53413557706205	43.024	0.51134	43.024	42.653	43.165	0					41	31	2	0	0	0	0.59802	1	13597	13597		22.58	4.3176	1	82024	+		14530	13948	9283	9318	14745	14745					0.07810333339955378
GTKEKKIGF	9	Unmodified	_GTKEKKIGF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5341796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.819	1	34.819	34.319	35.319	0								0	0	0	0.32356	1	13004	13004		30.318	0	1		+		14531	13948	9283	9318	14746	14746					0.07810333339955378
GTKEKKIGF	9	Unmodified	_GTKEKKIGF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343322753906	3	336.53432	1006.58113	-0.67476	-0.00022708	-0.27698	-9.3212E-05	-0.95174	-0.00032029	336.53447183699865	27.682	0.92159	27.682	27.131	28.052	0					49	32	3	0	0	0	0.5879	1	8946	8946		23.523	0	1	88735	+		14532	13948	9283	9318	14747	14747					0.07810333339955378
GTKEKKIGF	9	Unmodified	_GTKEKKIGF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343322753906	3	336.53432	1006.58113	-0.6738	-0.00022676	0.4059	0.0001366	-0.26791	-9.016E-05	336.53444355589494	37.116	0.16417	37.116	37.004	37.168	0					10	9	2	0	0	0	0.61124	1	12563	12563		13.454	0	1	55604	+		14533	13948	9283	9318	14748	14748					0.07810333339955378
GTKERNRQGQ	10	Unmodified	_GTKERNRQGQ_					0	0	0			REV__ENSG00000122042|ENST00000380680|UBL3	REV__ENSG00000122042|ENST00000380680|UBL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.874267578125	3	391.874287	1172.60103	0.13361	5.2357E-05	-0.37972	-0.0001488	-0.24612	-9.6447E-05	391.8741524549484	20.389	0.11444	20.389	20.331	20.445	0					4	2	2	0	0	0	0.7005	1	6612	6612		27.047	11.714	1	175620	+		14534	14327	9284	9319	14749	14749					0.021634773326240975
GTKFDGAK	8	Unmodified	_GTKFDGAK_					0	0	0			REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.2186584472656	2	412.21906	822.423567	-0.1523	-6.278E-05	-0.19796	-8.1603E-05	-0.35026	-0.00014438	412.21895300601096	26.216	0.51245	26.216	26.079	26.592	0					46	17	4	0	0	0	0.74405	1	8068	8068		27.882	0	1	5134300	+		14535	15750	9285	9320	14750	14750					0.005252538005720453
GTKFEVINDK	10	Unmodified	_GTKFEVINDK_					0	0	0			REV__tr|U7SF25|U7SF25_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02369PE=4SV=1	REV__tr|U7SF25|U7SF25_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02369PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.2080078125	3	384.208273	1149.60299	-0.58326	-0.00022409	-0.069085	-2.6543E-05	-0.65235	-0.00025064	384.2080954586861	23.085	0.26158	23.085	22.939	23.201	0					12	5	4	0	0	0	0.55031	1	7769	7769		39.873	5.7006	1	285770	+		14536	21672	9286	9321	14751	14751					0.034170932978668134
GTKGPSNVFK	10	Unmodified	_GTKGPSNVFK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.785400390625	2	517.785099	1033.55564	0.42402	0.00021955	0.84532	0.00043769	1.2693	0.00065725	517.7853322263835	20.418	0.40525	20.418	20.191	20.596	0					28	13	3	0	0	0	0.50639	1	5417	5417		47.96	11.513	1	209830			14537	1186	9287	9322	14752	14752					0.040208588175119075
GTKGPSNVFK	10	Unmodified	_GTKGPSNVFK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.78515625	2	517.785099	1033.55564	0.04842	2.5071E-05	0.80676	0.00041773	0.85518	0.0004428	517.7854185066058	20.75	0.42105	20.75	20.51	20.931	0					23	9	3	0	0	0	0.16365	1	6449	6449		91.265	27.058	1	1483400			14538	1186	9287	9322	14753	14753					0.040208588175119075
GTKGPSNVFK	10	Unmodified	_GTKGPSNVFK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.5258483886719	3	345.525825	1033.55564	0.50349	0.00017397	-0.19078	-6.592E-05	0.3127	0.00010805	345.5258212479417	20.787	0.46696	20.787	20.464	20.931	0					22	10	3	0	0	0	0.34979	1	6498	6498		61.765	25.318	1	472170			14539	1186	9287	9322	14754	14754					0.040208588175119075
GTKGPSNVFK	10	Unmodified	_GTKGPSNVFK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7852783203125	2	517.785099	1033.55564	0.074283	3.8462E-05	0.75346	0.00039013	0.82774	0.00042859	517.7854295746871	20.457	0.39256	20.457	20.243	20.636	0					27	12	3	0	0	0	0.34614	1	5684	5684		50.034	10.781	1	280170			14540	1186	9287	9322	14755	14755					0.040208588175119075
GTKGPSNVFK	10	Unmodified	_GTKGPSNVFK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7852783203125	2	517.785099	1033.55564	1.5455	0.00080022	-0.81491	-0.00042195	0.73055	0.00037827	517.7847367055052	20.665	0.56523	20.665	20.364	20.93	0					27	11	3	0	0	0	0.21778	1	6699	6699		83.647	8.6037	1	1804500			14541	1186	9287	9322	14756	14756					0.040208588175119075
GTKHLEPLL	9	Unmodified	_GTKHLEPLL_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.534423828125	3	336.53432	1006.58113	0.24151	8.1275E-05	-0.4151	-0.0001397	-0.1736	-5.8421E-05	336.5341531970846	29.574	1.1118	29.574	28.998	30.109	0					60	42	2	0	0	0	0.57706	1	9380	9380		24.519	0.99649	1	104580	+		14542	16169	9288	9323	14757	14757					0.0781033333993264
GTKHSHIYK	9	Unmodified	_GTKHSHIYK_					0	0	0			REV__tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	REV__tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.5306701660156	3	357.529569	1069.56688	0.4863	0.00017387	2.1395	0.00076494	2.6258	0.00093881	357.5304641946912	14.22	0.20664	14.22	14.132	14.338	0					16	5	4	0	0	0	0.39215	1	3409	3409		42.396	0.96952	1	1565600	+		14543	21825	9289	9324	14758	14758					0.0348768091164402
GTKLPGLLK	9	Unmodified	_GTKLPGLLK_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.8052673339844	2	463.805303	925.596052	0.69825	0.00032385	-0.93628	-0.00043425	-0.23803	-0.0001104	463.80483207628953	29.509	0.30016	29.509	29.367	29.667	0					14	6	3	0	0	0	0.19605	1	10950	10950		62.107	26.489	1	671590			14544	5406	9290	9325	14759	14759					0.1302782520793926
GTKMGTMM	8	Unmodified	_GTKMGTMM_					0	0	0			REV__SNX9|p.A127Pfs*75|1|0.28|ENSG00000130340|chr6:157896900-157896900|G/-|frameshift_variant	REV__SNX9|p.A127Pfs*75|1|0.28|ENSG00000130340|chr6:157896900-157896900|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.1932678222656	2	428.689909	855.365266	1.0401	0.00044588	-0.22591	-9.6847E-05	0.81418	0.00034903	428.69036143432083	49.92	0.50085	49.92	49.696	50.197	0					90	22	5	0	0	0	0.77246	1	19656	19656		24.203	4.8428	1	2036000	+		14545	21550	9291	9326	14760	14760					-0.0682021043221539
GTKNTAICK	9	Carbamidomethyl (C)	_GTKNTAIC(Carbamidomethyl (C))K_	GTKNTAIC(1)K		GTKNTAIC(55)K		0	1	0			REV__ENSG00000138347|ENST00000358913|MYPN	REV__ENSG00000138347|ENST00000358913|MYPN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.27459716796875	2	496.763309	991.512065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.811	1	13.811	13.311	14.311	0								0	0	0	0.17378	1	2753	2753		54.776	11.912	1		+		14546	14970	9292	9327	14761	14761	553				0.015969260487167958
GTKRILSE	8	Unmodified	_GTKRILSE_					0	0	0			REV__ENSG00000145386|ENST00000274026|CCNA2	REV__ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2662048339844	2	452.266542	902.51853	0.67164	0.00030376	-1.1182	-0.00050574	-0.44659	-0.00020198	452.2659930608226	15.745	0.17056	15.745	15.615	15.786	0					8	4	3	0	0	0	0.77246	1	4139	4139		24.203	0	1	175430	+		14547	15270	9293	9328	14762	14762					0.06337187271765288
GTKSLRLLNP	10	Unmodified	_GTKSLRLLNP_					0	0	0		nc|ENSG00000079931|Q6UVY6-2|MOXD1;ENSG00000079931|ENST00000367963|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.835693359375	2	549.835123	1097.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.582	1	10.582	10.082	11.082	0								0	0	0	0.4201	1	2039	2039		9.7057	0.52274	1				14548	1632	9294	9329	14763	14763					0.1107709615132535
GTKSNLKFL	9	Unmodified	_GTKSNLKFL_					0	0	0			REV__RAPGEF6|p.L1388*|1|0.25|ENSG00000158987|chr5:131431161-131431161|A/-|frameshift_variant	REV__RAPGEF6|p.L1388*|1|0.25|ENSG00000158987|chr5:131431161-131431161|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.182	1	42.182	41.682	42.682	0								0	0	0	0.35899	1	16819	16819		23.523	7.5159	1		+		14549	15696	9295	9330	14764	14764					0.07810333339955378
GTKSSIRIQ	9	Unmodified	_GTKSSIRIQ_					0	0	0			REV__ENSG00000135521|ENST00000367576|LTV1	REV__ENSG00000135521|ENST00000367576|LTV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.53118896484375	3	330.529458	988.566543	0.52498	0.00017352	4.0426	0.0013362	4.5676	0.0015097	330.5307991257099	18.861	0.38223	18.861	18.833	19.215	0					17	10	2	0	0	0	0.13519	1	5599	5599		58.23	3.5076	1	6656700	+		14550	14807	9296	9331	14765	14765					0.07180261191797399
GTKSSIRIQ	9	Unmodified	_GTKSSIRIQ_					0	0	0			REV__ENSG00000135521|ENST00000367576|LTV1	REV__ENSG00000135521|ENST00000367576|LTV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.53094482421875	3	330.529458	988.566543	3.0053	0.00099333	1.4549	0.00048089	4.4602	0.0014742	330.52995189241756	18.822	1.3412	18.822	18.636	19.978	0					50	27	3	0	0	0	0.25109	1	5680	5680		44.377	0	1	3179200	+		14551	14807	9296	9331	14766	14766					0.07180261191797399
GTKSSRTARL	10	Unmodified	_GTKSSRTARL_					0	0	0			REV__ENST00000597198.5_1_19:50168886-50168958:-|nuORF	REV__ENST00000597198.5_1_19:50168886-50168958:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.5452880859375	3	359.543878	1075.60981	3.5946	0.0012924	0.42515	0.00015286	4.0198	0.0014453	359.5440585123125	14.046	0.15942	14.046	13.977	14.136	0					11	8	2	0	0	0	0.45669	1	2970	2970		50.034	12.222	1	106700	+		14552	20551	9297	9332	14767	14767					0.0750245096908202
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.80419921875	2	543.804445	1085.59434	1.1625	0.00063217	-1.5656	-0.00085136	-0.40307	-0.00021919	543.8038520153617	33.416	0.23154	33.416	33.331	33.562	0					13	7	3	0	0	0	0.17062	1	10854	10854		67.494	21.521	1	103310			14553	2138	9298	9333	14768	14768					0.05496448127678377
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8721008300781	3	362.872056	1085.59434	0.10431	3.7853E-05	-0.92678	-0.0003363	-0.82247	-0.00029845	362.8718319081441	33.416	0.31289	33.416	33.307	33.62	0					15	10	2	0	0	0	0.50761	1	10860	10860		31.634	7.4025	1	95784			14554	2138	9298	9333	14769	14769					0.05496448127678377
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8720397949219	3	362.872056	1085.59434	0.47865	0.00017369	-0.65571	-0.00023794	-0.17706	-6.4249E-05	362.87184227572493	33.657	0.21358	33.657	33.525	33.739	0					14	5	4	0	0	0	0.14578	1	12454	12454		68.846	31.035	1	1059700			14555	2138	9298	9333	14770	14770					0.05496448127678377
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8045654296875	2	543.804445	1085.59434	0.35179	0.0001913	0.22989	0.00012502	0.58168	0.00031632	543.8046657657986	33.657	0.28084	33.657	33.525	33.806	0					12	7	3	0	0	0	0.054723	1	12455	12455		98.629	34.422	1	786230			14556	2138	9298	9333	14771	14771					0.05496448127678377
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.8718566894531	3	362.872056	1085.59434	-0.94841	-0.00034415	0.65039	0.00023601	-0.29801	-0.00010814	362.8722422442613	33.482	0.15947	33.482	33.411	33.571	0					10	6	2	0	0	0	0.48623	1	11232	11232		33.922	13.891	1	107790			14557	2138	9298	9333	14772	14772					0.05496448127678377
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.8721008300781	3	362.872056	1085.59434	1.3658	0.0004956	-1.7049	-0.00061865	-0.3391	-0.00012305	362.8714608543636	33.649	0.24836	33.649	33.521	33.77	0					10	6	2	0	0	0	0.28504	1	12901	12901		51.528	15.21	1	1002900			14558	2138	9298	9333	14773	14773					0.05496448127678377
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8043823242188	2	543.804445	1085.59434	0.32286	0.00017557	0.30278	0.00016465	0.62564	0.00034023	543.8046603380284	33.663	0.20756	33.663	33.546	33.753	0					14	5	3	0	0	0	0.26699	1	12881	12881		54.722	16.911	1	307800			14559	2138	9298	9333	14774	14774					0.05496448127678377
GTKYIFMVK	9	Unmodified	_GTKYIFMVK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.8718566894531	3	362.872056	1085.59434	-2.0541	-0.00074538	1.4551	0.00052803	-0.59896	-0.00021735	362.87268357128045	33.447	0.26394	33.447	33.374	33.638	0					14	7	3	0	0	0	0.14578	1	11729	11729		68.846	32.399	1	212670			14560	2138	9298	9333	14775	14775					0.05496448127678377
GTLAEFIQK	9	Unmodified	_GTLAEFIQK_					0	0	0		ENST00000593261.1_1_17:27055855-27062286:+|nuORF;ENST00000584342.5_1_17:27052953-27062286:+|nuORF;ENSG00000160602|ENST00000268766|NEK8	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.78216552734375	2	503.782025	1005.5495	-0.057114	-2.8773E-05	-0.14354	-7.2312E-05	-0.20065	-0.00010108	503.78233040856134	38.254	0.090294	38.254	38.194	38.284	0					7	5	2	0	0	0	0.38666	1	12486	12486		42.864	5.7052	1	51846			14561	5374	9299	9334	14776	14776					0.046943405859906306
GTLAEFIQK	9	Unmodified	_GTLAEFIQK_					0	0	0		ENST00000593261.1_1_17:27055855-27062286:+|nuORF;ENST00000584342.5_1_17:27052953-27062286:+|nuORF;ENSG00000160602|ENST00000268766|NEK8	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.7818908691406	2	503.782025	1005.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.369	1	38.369	37.869	38.869	0								0	0	0	0.25587	1	12943	12943		42.864	4.0581	1				14562	5374	9299	9334	14777	14777					0.046943405859906306
GTLAEFIQK	9	Unmodified	_GTLAEFIQK_					0	0	0		ENST00000593261.1_1_17:27055855-27062286:+|nuORF;ENST00000584342.5_1_17:27052953-27062286:+|nuORF;ENSG00000160602|ENST00000268766|NEK8	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7830505371094	2	503.782025	1005.5495	1.0159	0.00051181	-0.94651	-0.00047684	0.069429	3.4977E-05	503.78201544747395	38.568	0.37173	38.568	38.472	38.843	0					27	13	3	0	0	0	0.14578	1	15116	15116		68.846	3.3808	1	380290			14563	5374	9299	9334	14778	14778					0.046943405859906306
GTLAEFIQK	9	Unmodified	_GTLAEFIQK_					0	0	0		ENST00000593261.1_1_17:27055855-27062286:+|nuORF;ENST00000584342.5_1_17:27052953-27062286:+|nuORF;ENSG00000160602|ENST00000268766|NEK8	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.78167724609375	2	503.782025	1005.5495	-2.0336	-0.0010245	0.72051	0.00036298	-1.3131	-0.00066152	503.78273716673715	38.336	0.1715	38.336	38.251	38.422	0					11	8	2	0	0	0	0.28897	1	13710	13710		51.193	13.381	1	60767			14564	5374	9299	9334	14779	14779					0.046943405859906306
GTLAEFIQK	9	Unmodified	_GTLAEFIQK_					0	0	0		ENST00000593261.1_1_17:27055855-27062286:+|nuORF;ENST00000584342.5_1_17:27052953-27062286:+|nuORF;ENSG00000160602|ENST00000268766|NEK8	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	ENST00000593261.1_1_17:27055855-27062286:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.782470703125	2	503.782025	1005.5495	2.9295	0.0014758	-3.5448	-0.0017858	-0.61532	-0.00030999	503.7806993816491	38.518	0.49919	38.518	38.421	38.92	0					15	10	2	0	0	0	0.04067	1	15141	15141		98.582	16.341	1	654640			14565	5374	9299	9334	14780	14780					0.046943405859906306
GTLAGLGGL	9	Unmodified	_GTLAGLGGL_					0	0	0			REV__ARFRP1-ADRM1|1|fusion	REV__ARFRP1-ADRM1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.7239990234375	2	379.723978	757.433404	0.29107	0.00011053	-0.28849	-0.00010955	0.002579	9.7931E-07	379.7238424704366	21.457	0.57565	21.457	21.261	21.837	0					27	13	3	0	0	0	0.49003	1	6345	6345		33.516	0	1	419140	+		14566	12198	9300	9335	14781	14781					0.044984418059470954
GTLAQAVKK	9	Unmodified	_GTLAQAVKK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.28411865234375	2	458.284734	914.554916	-1.1272	-0.00051658	0.30358	0.00013912	-0.82363	-0.00037745	458.2848290742785	18.192	0.11812	18.192	18.114	18.232	0					8	4	3	0	0	0	0.016683	1	4707	4707		127.46	8.7186	1	196870			14567	2718	9301	9336	14782	14782					0.09422064168472843
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.2428283691406	2	455.243067	908.47158	-0.3677	-0.00016739	-0.67955	-0.00030936	-1.0473	-0.00047676	455.24277573924456	29.19	0.22631	29.19	29.089	29.316	0					14	8	2	0	0	0	0.056004	1	9162	9162		93.143	23.516	1	264990			14568	10731	9302	9337	14783	14783					0.013683277206155253
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2428283691406	2	455.243067	908.47158	-0.57981	-0.00026395	-0.23867	-0.00010865	-0.81847	-0.0003726	455.24303581470684	29.443	0.34338	29.443	29.351	29.694	0					14	8	2	0	0	0	0.0049871	1	10503	10503		158.07	46.426	1	1617300			14569	10731	9302	9337	14784	14784					0.013683277206155253
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.2427978515625	2	455.243067	908.47158	-1.12	-0.00050985	-1.4454	-0.00065799	-2.5653	-0.0011678	455.2423817169783	29.19	0.15386	29.19	29.107	29.261	0					14	6	3	0	0	0	0.063171	1	9474	9474		90.601	21.814	1	185160			14570	10731	9302	9337	14785	14785					0.013683277206155253
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.242919921875	2	455.243067	908.47158	-1.1123	-0.00050637	0.33684	0.00015334	-0.77547	-0.00035303	455.2432522049867	29.181	0.25766	29.181	29.099	29.357	0					13	10	2	0	0	0	0.016683	1	9470	9470		127.46	45.221	1	156460			14571	10731	9302	9337	14786	14786					0.013683277206155253
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2427673339844	2	455.243067	908.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.45	1	29.45	28.95	29.95	0								0	0	0	0.010168	1	10906	10906		109.48	38.183	1				14572	10731	9302	9337	14787	14787					0.013683277206155253
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.24298095703125	2	455.243067	908.47158	-0.5142	-0.00023409	0.26879	0.00012237	-0.24541	-0.00011172	455.2432089336317	29.454	0.29994	29.454	29.35	29.65	0					10	6	2	0	0	0	0.0049871	1	10895	10895		158.07	56.474	1	888310			14573	10731	9302	9337	14788	14788					0.013683277206155253
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.24322509765625	2	455.243067	908.47158	-2.6304	-0.0011975	1.4076	0.00064081	-1.2228	-0.00055667	455.24373464652433	29.249	0.1784	29.249	29.159	29.337	0					8	4	2	0	0	0	0.037924	1	9802	9802		101.25	42.471	1	248840			14574	10731	9302	9337	14789	14789					0.013683277206155253
GTLASSFAR	9	Unmodified	_GTLASSFAR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.24285888671875	2	455.243067	908.47158	2.4997	0.001138	-4.167	-0.001897	-1.6672	-0.000759	455.2413258670688	29.383	0.25794	29.383	29.274	29.532	0					9	5	2	0	0	0	0.013878	1	10748	10748		132.76	53.045	1	1388100			14575	10731	9302	9337	14790	14790					0.013683277206155253
GTLASVYHK	9	Unmodified	_GTLASVYHK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.26629638671875	2	488.266542	974.51853	-1.0634	-0.00051924	0.64112	0.00031304	-0.42232	-0.00020621	488.26680474165056	22.1	0.2335	22.1	22.028	22.261	0					18	7	4	0	0	0	0.012915	1	6455	6455		134.81	49.451	1	1086500			14576	1994	9303	9338	14791	14791					0.030251872717599326
GTLASVYHK	9	Unmodified	_GTLASVYHK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.26629638671875	2	488.266542	974.51853	-0.70851	-0.00034594	0.27076	0.0001322	-0.43775	-0.00021374	488.26665893810855	22.294	0.36283	22.294	22.187	22.55	0					21	7	4	0	0	0	0.014688	1	7534	7534		131.03	34.841	1	7245800			14577	1994	9303	9338	14792	14792					0.030251872717599326
GTLAYRKR	8	Unmodified	_GTLAYRKR_					0	0	0			REV__ENST00000520568.1_1_8:89198619-89339435:-|nuORF	REV__ENST00000520568.1_1_8:89198619-89339435:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.19366455078125	3	322.194409	963.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.756	1	25.756	25.256	26.256	0								0	0	0	1.7419	1	7785	7785		15.642	0	1		+		14578	13658	9304	9339	14793	14793					0.07816002119841414
GTLDFYMAR	9	Unmodified	_GTLDFYMAR_					0	0	0		ENST00000461099.1_1_19:3576912-3578370:+|nuORF;nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.258056640625	2	537.257859	1072.50117	3.3391	0.001794	-2.4298	-0.0013055	0.90928	0.00048852	537.2565422700211	42.092	0.20222	42.092	42.011	42.214	0					8	5	2	0	0	0	0.19605	1	16773	16773		62.107	24.948	1	143810			14579	1359	9305	9340	14794	14794					-0.032184763255600046
GTLDIRLKK	9	Unmodified	_GTLDIRLKK_					0	0	0		ENST00000483443.1_1_2:238664770-238678725:+|nuORF;ENSG00000124831|ENST00000308482|LRRFIP1	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5571594238281	3	348.557236	1042.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.598	1	24.598	24.098	25.098	0								0	0	0	0.37146	1	8628	8628		19.997	7.7901	1				14580	9980	9306	9341	14795	14795					0.13025997639647358
GTLDSVLRY	9	Unmodified	_GTLDSVLRY_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2659912109375	2	512.277106	1022.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.918	1	42.918	42.418	43.418	0								0	0	0	0.14033	1	16824	16824		62.107	7.3427	1				14581	4489	9307	9342	14796	14796					0.029291525806115715
GTLDSVLRY	9	Unmodified	_GTLDSVLRY_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2765502929688	2	512.277106	1022.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.9	1	42.9	42.4	43.4	0								0	0	0	0.15687	1	17147	17147		58.23	3.4652	1				14582	4489	9307	9342	14797	14797					0.029291525806115715
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7985229492188	2	539.798206	1077.58186	0.93676	0.00050566	-0.26338	-0.00014217	0.67338	0.00036349	539.7981038817603	42.335	0.27809	42.335	42.266	42.544	0					38	17	3	0	0	0	0.063823	1	13465	13465		90.37	26.163	1	228520			14583	4406	9308	9343	14798	14798					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7984619140625	2	539.798206	1077.58186	0.26246	0.00014168	0.43264	0.00023354	0.69511	0.00037522	539.7983734207863	42.642	0.45703	42.642	42.515	42.972	0					64	23	4	0	0	0	0.01873	1	16117	16117		124.08	36.326	1	3129000			14584	4406	9308	9343	14799	14799					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7984619140625	2	539.798206	1077.58186	-0.090587	-4.8899E-05	0.56453	0.00030473	0.47395	0.00025583	539.7985647550476	42.424	0.18784	42.424	42.36	42.548	0					27	11	4	0	0	0	0.07136	1	13974	13974		87.696	10.922	1	370920			14585	4406	9308	9343	14800	14800					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7985229492188	2	539.798206	1077.58186	0.30533	0.00016482	0.4187	0.00022601	0.72404	0.00039083	539.798399440654	42.593	0.3758	42.593	42.493	42.869	0					56	18	4	0	0	0	0.012231	1	16689	16689		136.27	43.073	1	3669000			14586	4406	9308	9343	14801	14801					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8002319335938	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.874	1	42.874	42.374	43.374	0								0	0	0	0.17378	1	16811	16811		54.776	12.38	1				14587	4406	9308	9343	14802	14802					0.046171279889904326
GTLEQWIEK	9	Unmodified	_GTLEQWIEK_					0	0	0		ENSG00000055332|ENST00000233057|EIF2AK2;nc|ENSG00000055332|P19525-2|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.289794921875	2	552.290214	1102.56587	1.6012	0.00088432	-1.6716	-0.00092318	-0.070365	-3.8862E-05	552.289270172319	41.879	0.20734	41.879	41.802	42.009	0					21	9	3	0	0	0	0.11411	1	16454	16454		76.17	12.636	1	187880			14588	1280	9309	9344	14803	14803					0.018694217520987877
GTLEQWIEK	9	Unmodified	_GTLEQWIEK_					0	0	0		ENSG00000055332|ENST00000233057|EIF2AK2;nc|ENSG00000055332|P19525-2|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2906494140625	2	552.290214	1102.56587	1.8176	0.0010039	-1.4404	-0.00079553	0.3772	0.00020833	552.2891703883743	41.881	0.17793	41.881	41.775	41.953	0					8	5	2	0	0	0	0.021015	1	16694	16694		120.31	32.129	1	142390			14589	1280	9309	9344	14804	14804					0.018694217520987877
GTLERGILKK	10	Unmodified	_GTLERGILKK_					0	0	0		ENSG00000178952|ENST00000313511|TUFM;ENST00000569217.1_1_16:28855425-28855644:-|nuORF	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.2363586425781	3	372.236274	1113.68699	0.2533	9.4287E-05	-0.30126	-0.00011214	-0.047959	-1.7852E-05	372.23609921655066	21.315	0.16528	21.315	21.225	21.39	0					5	3	2	0	0	0	0.41384	1	7048	7048		54.722	21.683	1	204590			14590	6743	9310	9345	14805	14805					0.13469669185428756
GTLERGILKK	10	Unmodified	_GTLERGILKK_					0	0	0		ENSG00000178952|ENST00000313511|TUFM;ENST00000569217.1_1_16:28855425-28855644:-|nuORF	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.23614501953125	3	372.236274	1113.68699	-0.29802	-0.00011094	0.068051	2.5331E-05	-0.22997	-8.5604E-05	372.23621367696404	21.296	0.21355	21.296	21.19	21.404	0					9	4	3	0	0	0	0.38179	1	6924	6924		58.246	15.908	1	493630			14591	6743	9310	9345	14806	14806					0.13469669185428756
GTLERSKNK	9	Unmodified	_GTLERSKNK_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.793701171875	2	516.793455	1031.57236	1.493	0.0007716	-0.76125	-0.00039341	0.7318	0.00037819	516.7932004310284	11.86	0.14349	11.86	11.762	11.906	0					10	4	4	0	0	0	0.037924	1	2523	2523		101.25	16.092	1	1603800			14592	7852	9311	9346	14807	14807					0.057833597034687045
GTLGAVHK	8	Unmodified	_GTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.7294921875	2	391.729595	781.444637	0.56747	0.00022229	-0.79348	-0.00031083	-0.22601	-8.8535E-05	391.72923123749905	16.506	0.072866	16.506	16.476	16.549	0					4	2	2	0	0	0	0.30437	1	3777	3777		82.305	13.82	1	215370			14593	1938	9312	9347	14808	14808					0.045172639000952586
GTLGAVHK	8	Unmodified	_GTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.7297668457031	2	391.729595	781.444637	-0.045685	-1.7896E-05	0.59232	0.00023203	0.54663	0.00021413	391.72990582934347	16.501	0.10087	16.501	16.437	16.538	0					6	3	2	0	0	0	0.28158	1	3775	3775		88.643	20.158	1	113580			14594	1938	9312	9347	14809	14809					0.045172639000952586
GTLGAVHK	8	Unmodified	_GTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.7296142578125	2	391.729595	781.444637	0.88073	0.00034501	-0.66967	-0.00026233	0.21106	8.2678E-05	391.72930371067974	16.784	0.20787	16.784	16.705	16.913	0					13	5	3	0	0	0	0.25485	1	4629	4629		97.473	31.67	1	1514100			14595	1938	9312	9347	14810	14810					0.045172639000952586
GTLGAVHK	8	Unmodified	_GTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.7294616699219	2	391.729595	781.444637	0.3639	0.00014255	-0.7474	-0.00029278	-0.3835	-0.00015023	391.7293108397244	16.722	0.40026	16.722	16.613	17.013	0					15	8	3	0	0	0	0.26534	1	4847	4847		94.006	25.522	1	2083600			14596	1938	9312	9347	14811	14811					0.045172639000952586
GTLGAVHK	8	Unmodified	_GTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.7296447753906	2	391.729595	781.444637	-0.1572	-6.1581E-05	0.31273	0.00012251	0.15553	6.0924E-05	391.7296976683387	16.557	0.17058	16.557	16.476	16.646	0					11	4	3	0	0	0	0.23519	1	3944	3944		119.56	51.072	1	1888500			14597	1938	9312	9347	14812	14812					0.045172639000952586
GTLGAVHK	8	Unmodified	_GTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.7295837402344	2	391.729595	781.444637	-0.67681	-0.00026513	0.86385	0.0003384	0.18704	7.3268E-05	391.72985402169957	16.705	0.16133	16.705	16.65	16.812	0					7	3	3	0	0	0	0.25485	1	4693	4693		97.473	26.095	1	284350			14598	1938	9312	9347	14813	14813					0.045172639000952586
GTLGAVHK	8	Unmodified	_GTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.72998046875	2	391.729595	781.444637	0.46734	0.00018307	-0.70471	-0.00027606	-0.23738	-9.2987E-05	391.72930698406947	16.738	0.50701	16.738	16.634	17.141	0					20	10	3	0	0	0	0.26534	1	4687	4687		94.006	20.032	1	10820000			14599	1938	9312	9347	14814	14814					0.045172639000952586
GTLGGLTAAG	10	Unmodified	_GTLGGLTAAG_					0	0	0		ENST00000479818.5_1_22:50713453-50713714:-|nuORF	ENST00000479818.5_1_22:50713453-50713714:-|nuORF	ENST00000479818.5_1_22:50713453-50713714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.22430419921875	2	409.224342	816.434132	0.99602	0.0004076	-2.1553	-0.00088201	-1.1593	-0.00047441	409.2237979139229	17.021	0.29669	17.021	16.9	17.197	0					15	7	4	0	0	0	0.14393	1	4723	4723		87.754	10.98	1	830570			14600	9945	9313	9348	14815	14815					0.018572364549868325
GTLGGSPTK	9	Unmodified	_GTLGGSPTK_					0	0	0		ENST00000533675.5_1_11:117265793-117282881:+|nuORF;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.2242431640625	2	409.224342	816.434132	-0.51176	-0.00020942	-0.71179	-0.00029128	-1.2235	-0.00050071	409.2243961309194	16.948	0.36013	16.948	16.747	17.107	0					16	7	4	0	0	0	0.035062	1	4788	4788		104.06	16.302	1	506200			14601	2619	9314	9349	14816	14816					0.0185723645500957
GTLGGSPTK	9	Unmodified	_GTLGGSPTK_					0	0	0		ENST00000533675.5_1_11:117265793-117282881:+|nuORF;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.2242126464844	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.959	1	16.959	16.459	17.459	0								0	0	0	0.10826	1	4803	4803		69.628	0.8408	1				14602	2619	9314	9349	14817	14817					0.0185723645500957
GTLGGSPTKK	10	Unmodified	_GTLGGSPTKK_					0	0	0		ENST00000533675.5_1_11:117265793-117282881:+|nuORF;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2715759277344	2	473.271824	944.529095	-2.5183	-0.0011919	1.872	0.00088596	-0.64636	-0.0003059	473.2725670792593	14.343	0.18689	14.343	14.249	14.436	0					11	6	3	0	0	0	0.31613	1	3022	3022		65.465	12.529	1	187500			14603	2619	9315	9350	14818	14818					0.05461169926195453
GTLGTSVADK	10	Unmodified	_GTLGTSVADK_					0	0	0			REV__PLIN4|p.G374Afs*35|1|0.53|ENSG00000167676|chr19:4512797-4512797|C/-|frameshift_variant	REV__PLIN4|p.G374Afs*35|1|0.53|ENSG00000167676|chr19:4512797-4512797|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7530517578125	2	474.753464	947.492375	-0.011114	-5.2763E-06	-0.35509	-0.00016858	-0.36621	-0.00017386	474.7531960148956	22.882	0.11545	22.882	22.812	22.928	0					6	3	2	0	0	0	0.36476	1	6532	6532		60.118	0	1	220480	+		14604	16205	9316	9351	14819	14819					0.01652873309626557
GTLGVAQHR	9	Unmodified	_GTLGVAQHR_					0	0	0		nc|ENSG00000132768|Q9BQC3-3|DPH2;ENSG00000132768|ENST00000255108|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7616271972656	2	469.761958	937.509363	-0.62501	-0.00029361	0.086434	4.0603E-05	-0.53857	-0.000253	469.7619763317561	17.852	0.13403	17.852	17.762	17.896	0					6	3	2	0	0	0	0.098791	1	5118	5118		79.713	13.909	1	1035900			14605	3815	9317	9352	14820	14820					0.03810838706078812
GTLGVEHSWDT	11	Unmodified	_GTLGVEHSWDT_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.2762451171875	2	601.277835	1200.54112	-0.22137	-0.0001331	0.09397	5.6502E-05	-0.1274	-7.66E-05	601.2780221691033	29.645	0.6548	29.645	29.512	30.167	0					44	16	5	0	0	0	0.60656	1	10714	10714		36.447	8.3653	1	1944100			14606	6984	9318	9353	14821	14821					-0.0511325812128689
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2778930664062	2	518.277106	1034.53966	0.46929	0.00024322	-0.73686	-0.0003819	-0.26757	-0.00013868	518.2770766881715	33.169	0.40362	33.169	33.001	33.404	0					38	17	3	0	0	0	0.25761	2	10744	10738;10744		54.722	0	1	862650			14607	1090	9319	9354	14822;14823	14823					0.023771525806068894
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2772216796875	2	518.277106	1034.53966	0.053437	2.7695E-05	-0.46887	-0.000243	-0.41543	-0.00021531	518.2771453721406	33.401	0.73015	33.401	33.009	33.739	0					79	19	6	0	0	0	0.011389	2	12341	12322;12341		138.06	36.81	1	5638800			14608	1090	9319	9354	14824;14825	14825					0.023771525806068894
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.277099609375	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.411	1	33.411	32.911	33.911	0								0	0	0	0.034344	1	12786	12786		93.598	22.781	1				14609	1090	9319	9354	14826	14826					0.023771525806068894
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2771606445312	2	518.277106	1034.53966	-0.37399	-0.00019383	-0.4321	-0.00022395	-0.80609	-0.00041778	518.2771677827999	33.403	0.52532	33.403	33.079	33.605	0					26	12	4	0	0	0	0.017421	1	12779	12779		126.24	13.832	1	566760			14610	1090	9319	9354	14827	14827					0.023771525806068894
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2772827148438	2	518.277106	1034.53966	-1.4098	-0.00073065	1.5601	0.00080858	0.15037	7.7934E-05	518.2782873445308	33.215	0.46896	33.215	33.024	33.493	0					33	14	3	0	0	0	0.02953	2	11619	11603;11619		109.48	8.2257	1	1132000			14611	1090	9319	9354	14828;14829	14829					0.023771525806068894
GTLKDLIYK	9	Unmodified	_GTLKDLIYK_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.81298828125	2	525.813325	1049.6121	0.97525	0.0005128	-0.36613	-0.00019251	0.60912	0.00032028	525.813096214834	34.507	0.37696	34.507	34.225	34.602	0					14	9	3	0	0	0	0.090954	1	13299	13299		85.161	8.3867	1	285180			14612	6079	9320	9355	14830	14830					0.08927486654192762
GTLKDLIYK	9	Unmodified	_GTLKDLIYK_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8138427734375	2	525.813325	1049.6121	0.58316	0.00030663	0.76483	0.00040216	1.348	0.0007088	525.8136773381939	34.451	0.31199	34.451	34.294	34.606	0					10	6	2	0	0	0	0.11635	1	13194	13194		78.264	12.798	1	396580			14613	6079	9320	9355	14831	14831					0.08927486654192762
GTLKNPPKK	9	Unmodified	_GTLKNPPKK_					0	0	0		nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.8054504394531	2	491.805834	981.597115	0.81951	0.00040304	-1.2624	-0.00062086	-0.44289	-0.00021782	491.8053023404883	13.297	0.1561	13.297	13.193	13.349	0					5	3	2	0	0	0	0.2873	1	3066	3066		51.335	5.3835	1	162460			14614	11705	9321	9356	14832	14832					0.10558039576847023
GTLKTPPK	8	Unmodified	_GTLKTPPK_					0	0	0		nc|ENSG00000178177|Q8N3X6|LCORL;nc|ENSG00000178177|Q8N3X6-2|LCORL	nc|ENSG00000178177|Q8N3X6|LCORL	nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.26055908203125	2	421.260728	840.506903	-0.12473	-5.2543E-05	-0.14783	-6.2276E-05	-0.27256	-0.00011482	421.26064190371716	31.53	0.59822	31.53	31.228	31.827	0					34	13	3	0	0	0	0.51384	1	11980	11980		58.782	0.97068	1	614510			14615	11661	9322	9357	14833	14833					0.0802699024843605
GTLLGVATAT	10	Unmodified	_GTLLGVATAT_					0	0	0		LACC1|p.M313T|1|0.1|ENSG00000179630|chr13:43888787-43888787|T/C|missense_variant	LACC1|p.M313T|1|0.1|ENSG00000179630|chr13:43888787-43888787|T/C|missense_variant	LACC1|p.M313T|1|0.1|ENSG00000179630|chr13:43888787-43888787|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.26025390625	2	452.260925	902.507297	-0.51785	-0.0002342	-0.014799	-6.6932E-06	-0.53265	-0.0002409	452.2604679990134	31.077	0.30908	31.077	30.982	31.291	0					10	7	2	0	0	0	0.47859	1	11266	11266		47.657	0	1	221530			14616	11307	9323	9358	14834	14834					0.052143651776077604
GTLLKAQIRHQ	11	Unmodified	_GTLLKAQIRHQ_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2533264160156	3	422.254328	1263.74115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.732	1	43.732	43.232	44.232	0								0	0	0	0.38772	1	17512	17512		39.873	4.6949	1				14617	4732	9324	9359	14835	14835					0.11983261336990836
GTLLLSIIYI	10	Unmodified	_GTLLLSIIYI_					0	0	0			REV__ENST00000602886.1_1_15:31218770-31219034:+|nuORF	REV__ENST00000602886.1_1_15:31218770-31219034:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.23309326171875	3	369.233759	1104.67945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.621	1	15.621	15.121	16.121	0								0	0	0	0.40797	1	3598	3598		28.081	0	1		+		14618	20608	9325	9360	14836	14836					0.13129516865137703
GTLLYQLGILK	11	Unmodified	_GTLLYQLGILK_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.9217224121094	3	406.920063	1217.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.703	1	19.703	19.203	20.203	0								0	0	0	0.34471	1	5402	5402		45.908	8.3999	1				14619	3485	9326	9361	14837	14837					0.1381999315944995
GTLMGSGLRK	10	Unmodified	_GTLMGSGLRK_					0	0	0		ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;ABCB8|p.G460Afs*31|1|0.34|ENSG00000197150|chr7:151040570-151040570|G/-|frameshift_variant	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.28668212890625	2	510.286951	1018.55935	-0.010018	-5.1122E-06	-0.36144	-0.00018444	-0.37146	-0.00018955	510.286864730316	23.13	0.30586	23.13	22.958	23.263	0					14	7	3	0	0	0	0.049549	1	7619	7619		109.48	10.103	1	1504100			14620	7432	9327	9362	14838	14838					0.05081205319743276
GTLMGSGLRK	10	Unmodified	_GTLMGSGLRK_					0	0	0		ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;ABCB8|p.G460Afs*31|1|0.34|ENSG00000197150|chr7:151040570-151040570|G/-|frameshift_variant	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.286865234375	2	510.286951	1018.55935	-0.42125	-0.00021496	0.076236	3.8902E-05	-0.34502	-0.00017606	510.28710779169586	23.036	0.26801	23.036	22.927	23.195	0					11	5	3	0	0	0	0.09653	1	7893	7893		96.034	11.118	1	1371600			14621	7432	9327	9362	14839	14839					0.05081205319743276
GTLMISTAL	9	Unmodified	_GTLMISTAL_					0	0	0		ENST00000447998.6_1_5:150095193-150097878:-|nuORF	ENST00000447998.6_1_5:150095193-150097878:-|nuORF	ENST00000447998.6_1_5:150095193-150097878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.7518615722656	2	453.751879	905.489204	-0.41801	-0.00018967	-0.0050089	-2.2728E-06	-0.42302	-0.00019195	453.7518343476293	38.135	0.1474	38.135	38.039	38.186	0					5	3	2	0	0	0	0.1236	1	14958	14958		73.975	7.5455	1	215070			14622	9631	9328	9363	14840	14840					0.03267906931239395
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.8525085449219	3	377.852778	1130.53651	0.51695	0.00019533	-1.4254	-0.0005386	-0.90847	-0.00034327	377.8525257797683	29.465	0.35694	29.465	29.388	29.745	0					34	12	5	0	0	0	0.50461	1	9294	9294		56.721	27.551	1	688350			14623	8764	9329	9364	14841	14841					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.2756958007812	2	566.275529	1130.53651	1.1975	0.00067813	-1.2471	-0.00070619	-0.04955	-2.8059E-05	566.2752617517613	29.462	0.44426	29.462	29.354	29.799	0					41	16	4	0	0	0	0.055856	1	9285	9285		93.195	40.259	1	1149000			14624	8764	9329	9364	14842	14842					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.852783203125	3	377.852778	1130.53651	0.81163	0.00030668	-1.4861	-0.00056154	-0.6745	-0.00025486	377.85245752892075	29.737	1.4787	29.737	29.614	31.092	0					87	36	5	0	0	0	0.43426	1	10643	10643		64.207	29.055	1	4734300			14625	8764	9329	9364	14843	14843					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.2757568359375	2	566.275529	1130.53651	0.25413	0.00014391	-0.45698	-0.00025878	-0.20285	-0.00011487	566.2756766336149	29.731	1.2343	29.731	29.6	30.835	0					84	30	5	0	0	0	0.00012896	2	10635	10635;10800		191.63	114.85	1	8093400			14626	8764	9329	9364	14844;14845	14844					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.2747802734375	2	566.275529	1130.53651	-0.3271	-0.00018523	0.014713	8.3316E-06	-0.31239	-0.0001769	566.2760459455394	29.508	0.43792	29.508	29.393	29.831	0					44	16	4	0	0	0	0.063823	1	9585	9585		90.37	44.398	1	1049900			14627	8764	9329	9364	14846	14846					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.2756958007812	2	566.275529	1130.53651	0.24211	0.0001371	-0.35721	-0.00020228	-0.1151	-6.518E-05	566.275701294181	29.742	1.0916	29.742	29.633	30.725	0					61	23	5	0	0	0	0.00012896	2	11031	11031;11221		191.63	114.85	1	6743600			14628	8764	9329	9364	14847;14848	14847					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.85247802734375	3	377.852778	1130.53651	0.30199	0.00011411	-0.67627	-0.00025553	-0.37427	-0.00014142	377.85252503152003	29.522	0.21773	29.522	29.426	29.644	0					9	5	2	0	0	0	0.50461	1	9932	9932		39.253	7.6186	1	248740			14629	8764	9329	9364	14849	14849					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.8525390625	3	377.852778	1130.53651	-0.12974	-4.9024E-05	-0.38935	-0.00014712	-0.5191	-0.00019614	377.8527808964124	29.554	0.39911	29.554	29.415	29.814	0					19	10	3	0	0	0	0.50461	1	9929	9929		47.657	47.657	1	304860			14630	8764	9329	9364	14850	14850					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.27587890625	2	566.275529	1130.53651	-1.1727	-0.00066405	1.6678	0.00094445	0.49516	0.0002804	566.2767543583919	29.501	0.25117	29.501	29.443	29.694	0					15	6	4	0	0	0	0.098791	1	9936	9936		79.713	44.561	1	272150			14631	8764	9329	9364	14851	14851					-0.023541370693919816
GTLMWHQMK	9	Unmodified	_GTLMWHQMK_					0	0	0		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.8526611328125	3	377.852778	1130.53651	0.68685	0.00025953	-1.7106	-0.00064635	-1.0238	-0.00038683	377.8523775182594	29.664	1.7871	29.664	29.532	31.319	0					79	36	6	0	0	0	0.35045	1	10891	10891		71.877	37.956	1	6434800			14632	8764	9329	9364	14852	14852					-0.023541370693919816
GTLMWHQMK	9	Oxidation (M)	_GTLMWHQM(Oxidation (M))K_		GTLMWHQM(1)K		GTLM(-73)WHQM(73)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.2730102539062	2	574.272986	1146.53142	1.0458	0.00060058	-0.91729	-0.00052677	0.12852	7.3804E-05	574.2726533314693	24.82	0.50893	24.82	24.677	25.186	0					31	15	3	0	0	0	0.047412	1	7390	7390		96.19	28.697	2	266160			14633	8764	9329	9365	14853	14853		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLM(Oxidation (M))WHQMK_		GTLM(1)WHQMK		GTLM(63)WHQM(-63)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.2731323242188	2	574.272986	1146.53142	1.0443	0.00059974	-0.69951	-0.00040171	0.34484	0.00019803	574.2726455752564	26.716	0.54403	26.716	26.581	27.125	0					35	18	3	0	0	0	0.16002	1	8157	8157		66.429	24.033	2	251870			14634	8764	9329	9365	14854	14854		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLMWHQM(Oxidation (M))K_		GTLMWHQM(1)K		GTLM(-69)WHQM(69)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.273193359375	2	574.272986	1146.53142	-0.1106	-6.3513E-05	-0.15697	-9.0145E-05	-0.26757	-0.00015366	574.2733610925279	25.097	0.73481	25.097	24.969	25.704	0					60	17	5	0	0	0	0.048471	1	8537	8537		95.815	42.878	2	2057600			14635	8764	9329	9365	14855	14855		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLM(Oxidation (M))WHQMK_		GTLM(1)WHQMK		GTLM(79)WHQM(-79)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.2733764648438	2	574.272986	1146.53142	-0.11072	-6.3584E-05	0.085069	4.8853E-05	-0.025651	-1.4731E-05	574.273414002269	26.922	0.80269	26.922	26.657	27.46	0					51	19	4	0	0	0	0.037569	1	9351	9351		101.6	46.824	2	1670800			14636	8764	9329	9365	14856	14856		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLMWHQM(Oxidation (M))K_		GTLMWHQM(1)K		GTLM(-50)WHQM(50)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.2734375	2	574.272986	1146.53142	-0.18045	-0.00010363	-0.1544	-8.8666E-05	-0.33485	-0.0001923	574.2732404708543	24.84	0.44051	24.84	24.749	25.189	0					25	14	3	0	0	0	0.13267	1	7653	7653		71.877	32.625	2	201390			14637	8764	9329	9365	14857	14857		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLM(Oxidation (M))WHQMK_		GTLM(1)WHQMK		GTLM(55)WHQM(-55)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.2734375	2	574.272986	1146.53142	-0.18311	-0.00010515	0.36008	0.00020679	0.17698	0.00010163	574.2734420358468	26.743	0.34311	26.743	26.619	26.963	0					22	12	2	0	0	0	0.13267	1	8431	8431		71.877	27.5	2	137580			14638	8764	9329	9365	14858	14858		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLMWHQM(Oxidation (M))K_		GTLMWHQM(1)K		GTLM(-99)WHQM(99)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.273193359375	2	574.272986	1146.53142	-0.17602	-0.00010109	-0.053148	-3.0522E-05	-0.22917	-0.00013161	574.2733472475678	25.081	1.5365	25.081	24.924	26.46	0					67	29	4	0	0	0	0.019882	1	8867	8867		122.18	65.455	2	1787200			14639	8764	9329	9365	14859	14859		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLM(Oxidation (M))WHQMK_		GTLM(1)WHQMK		GTLM(79)WHQM(-79)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.2733764648438	2	574.272986	1146.53142	-0.17333	-9.9541E-05	0.1888	0.00010842	0.015466	8.8817E-06	574.2734034070592	26.953	0.96344	26.953	26.543	27.506	0					36	19	3	0	0	0	0.037569	1	9696	9696		101.6	101.6	2	1153800			14640	8764	9329	9365	14860	14860		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLM(Oxidation (M))WHQMK_		GTLM(1)WHQMK		GTLM(50)WHQM(-50)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.2735595703125	2	574.272986	1146.53142	-0.16624	-9.547E-05	0.35594	0.0002044	0.18969	0.00010893	574.2733380965939	27.69	0.35912	27.69	27.439	27.798	0					13	7	3	0	0	0	0.047412	1	10074	10074		96.19	36.072	2	187920			14641	8764	9329	9365	14861	14861		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLM(Oxidation (M))WHQMK_		GTLM(0.992)WHQM(0.008)K		GTLM(21)WHQM(-21)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.184326171875	3	383.184416	1146.53142	-0.14043	-5.3811E-05	-0.4564	-0.00017488	-0.59683	-0.00022869	383.1843852875384	26.783	0.30823	26.783	26.639	26.947	0					17	7	4	0	0	0	0.33044	1	8683	8683		47.657	20.013	2	207050			14642	8764	9329	9365	14862	14862		346;347			-0.0359844093202355
GTLMWHQMK	9	Oxidation (M)	_GTLM(Oxidation (M))WHQMK_		GTLM(0.99)WHQM(0.01)K		GTLM(20)WHQM(-20)K	0	0	1		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.1844177246094	3	383.184416	1146.53142	-0.56003	-0.0002146	-0.18846	-7.2216E-05	-0.7485	-0.00028681	383.1845585836529	26.911	0.61761	26.911	26.756	27.373	0					39	12	5	0	0	0	0.27249	1	9553	9553		52.937	11.51	2	3413800			14643	8764	9329	9365	14863	14863		346;347			-0.0359844093202355
GTLMWHQMK	9	2 Oxidation (M)	_GTLM(Oxidation (M))WHQM(Oxidation (M))K_		GTLM(1)WHQM(1)K		GTLM(100)WHQM(100)K	0	0	2		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.2708129882812	2	582.270444	1162.52633	-0.0090489	-5.2689E-06	0.54202	0.0003156	0.53297	0.00031033	582.2711807211449	22.42	0.64547	22.42	22.323	22.969	0					34	15	4	0	0	0	0.037569	1	7294	7294		101.6	39.493	1	1024300			14644	8764	9329	9366	14864	14864		346;347			-0.048427447946096436
GTLMWHQMK	9	2 Oxidation (M)	_GTLM(Oxidation (M))WHQM(Oxidation (M))K_		GTLM(1)WHQM(1)K		GTLM(130)WHQM(130)K	0	0	2		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.271240234375	2	582.270444	1162.52633	-0.32035	-0.00018653	0.23453	0.00013656	-0.085813	-4.9966E-05	582.2709928988925	22.339	0.36283	22.339	22.187	22.55	0					22	7	4	0	0	0	0.01768	1	7537	7537		125.81	61.607	1	782500			14645	8764	9329	9366	14865	14865		346;347			-0.048427447946096436
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2796936035156	2	486.279649	970.544745	0.01181	5.7432E-06	-0.21547	-0.00010478	-0.20366	-9.9033E-05	486.27955315921594	23.718	0.23331	23.718	23.615	23.849	0					15	8	3	0	0	0	0.037712	1	6893	6893		101.46	21.747	1	302600			14646	2255	9330	9367	14866	14866					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2796936035156	2	486.279649	970.544745	-0.29213	-0.00014206	0.15103	7.3442E-05	-0.1411	-6.8613E-05	486.27977470048023	24.049	0.31578	24.049	23.904	24.22	0					19	7	4	0	0	0	0.0063888	1	8032	8032		152.06	47.314	1	1995100			14647	2255	9330	9367	14867	14867					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2794189453125	2	486.279649	970.544745	-1.2419	-0.00060389	0.29731	0.00014458	-0.94456	-0.00045932	486.27975862364156	23.762	0.24288	23.762	23.669	23.912	0					23	8	5	0	0	0	0.022698	1	7179	7179		117.53	21.335	1	826160			14648	2255	9330	9367	14868	14868					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2792663574219	2	486.279649	970.544745	0.6436	0.00031297	-0.96356	-0.00046856	-0.31996	-0.00015559	486.27893911997063	23.956	0.36678	23.956	23.847	24.213	0					15	7	3	0	0	0	0.010427	1	8331	8331		140.11	46.969	1	5697200			14649	2255	9330	9367	14869	14869					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2793273925781	2	486.279649	970.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.774	1	23.774	23.274	24.274	0								0	0	0	0.023427	1	7310	7310		99.013	10.836	1				14650	2255	9330	9367	14870	14870					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2794189453125	2	486.279649	970.544745	-2.9139	-0.0014169	2.7658	0.001345	-0.14802	-7.1979E-05	486.28080153228325	23.783	0.22238	23.783	23.665	23.888	0					13	5	4	0	0	0	0.0063888	1	7302	7302		152.06	48.004	1	710800			14651	2255	9330	9367	14871	14871					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.27935791015625	2	486.279649	970.544745	0.82819	0.00040273	0.35291	0.00017161	1.1811	0.00057435	486.2790070482276	23.923	0.26631	23.923	23.813	24.079	0					9	5	3	0	0	0	0.015992	1	8189	8189		128.6	45.852	1	2256100			14652	2255	9330	9367	14872	14872					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2794494628906	2	486.279649	970.544745	2.5218	0.0012263	-2.7582	-0.0013413	-0.23643	-0.00011497	486.27819491038247	23.953	0.36721	23.953	23.796	24.164	0					19	7	5	0	0	0	0.0076184	1	8183	8183		146.79	42.729	1	5781300			14653	2255	9330	9367	14873	14873					0.0582945644322308
GTLPAKLLK	9	Unmodified	_GTLPAKLLK_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.81268310546875	2	470.813128	939.611703	-0.61032	-0.00028735	-0.045137	-2.1251E-05	-0.65546	-0.0003086	470.8130270684546	27.497	0.42799	27.497	27.321	27.749	0					29	10	4	0	0	0	0.19605	1	9581	9581		62.107	23.301	1	1109100			14654	6787	9331	9368	14874	14874					0.13948111724994305
GTLPAKLLK	9	Unmodified	_GTLPAKLLK_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.81268310546875	2	470.813128	939.611703	-0.85179	-0.00040103	0.48391	0.00022783	-0.36788	-0.0001732	470.81331810392317	27.463	0.40979	27.463	27.287	27.697	0					19	8	3	0	0	0	0.33044	1	9933	9933		47.657	13.485	1	578450			14655	6787	9331	9368	14875	14875					0.13948111724994305
GTLPGLRLPS	10	Unmodified	_GTLPGLRLPS_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant;ENST00000492173.1_1_1:10718563-10720675:-|nuORF	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.5386657714844	3	337.537953	1009.59203	0.53301	0.00017991	3.1544	0.0010647	3.6874	0.0012446	337.538891788989	37.282	0.54046	37.282	36.95	37.49	0					12	8	3	0	0	0	0.73274	1	14554	14554		21.686	10.175	1	91907			14656	3684	9332	9369	14876	14876					0.08761735714222141
GTLPHPLQR	9	Unmodified	_GTLPHPLQR_					0	0	0		ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7934875488281	2	509.793258	1017.57196	1.024	0.00052204	-1.3226	-0.00067426	-0.29858	-0.00015221	509.79244057102454	24.312	0.31612	24.312	24.129	24.446	0					22	10	3	0	0	0	0.33044	1	7126	7126		47.657	6.8792	1	365000			14657	2661	9333	9370	14877	14877					0.06387984774278266
GTLPHPLQR	9	Unmodified	_GTLPHPLQR_					0	0	0		ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7926330566406	2	509.793258	1017.57196	0.94981	0.00048421	-0.8234	-0.00041976	0.12641	6.4444E-05	509.79258337600425	24.576	0.76455	24.576	24.265	25.03	0					44	18	4	0	0	0	0.13267	1	8264	8264		71.877	17.101	1	2418200			14658	2661	9333	9370	14878	14878					0.06387984774278266
GTLPHPLQR	9	Unmodified	_GTLPHPLQR_					0	0	0		ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.19793701171875	3	340.197931	1017.57196	-0.70282	-0.0002391	0.35825	0.00012188	-0.34457	-0.00011722	340.19810377474266	24.338	0.46033	24.338	24.007	24.468	0					34	14	4	0	0	0	0.50461	1	7442	7442		47.657	6.8792	1	471640			14659	2661	9333	9370	14879	14879					0.06387984774278266
GTLPHPLQR	9	Unmodified	_GTLPHPLQR_					0	0	0		ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7935791015625	2	509.793258	1017.57196	0.24121	0.00012297	0.2262	0.00011532	0.46742	0.00023829	509.7933175197907	24.392	0.53561	24.392	24.124	24.66	0					26	12	3	0	0	0	0.24095	1	7587	7587		56.721	1.9447	1	379610			14660	2661	9333	9370	14880	14880					0.06387984774278266
GTLPHPLQR	9	Unmodified	_GTLPHPLQR_					0	0	0		ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7933349609375	2	509.793258	1017.57196	1.3568	0.00069167	-1.1287	-0.00057542	0.22804	0.00011625	509.7924723027504	24.521	0.74987	24.521	24.213	24.963	0					36	15	4	0	0	0	0.055856	1	8459	8459		93.195	13.744	1	3428100			14661	2661	9333	9370	14881	14881					0.06387984774278266
GTLPLIKHE	9	Unmodified	_GTLPLIKHE_					0	0	0			REV__PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	REV__PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342102050781	3	336.53432	1006.58113	0.24126	8.1192E-05	-0.15007	-5.0503E-05	0.091189	3.0688E-05	336.5341983043867	41.786	0.50039	41.786	41.55	42.051	0					46	31	2	0	0	0	0.61124	1	13400	13400		19.997	10.291	1	71678	+		14662	17312	9334	9371	14882	14882					0.07810333339944009
GTLQPPFTAR	10	Unmodified	_GTLQPPFTAR_					0	0	0		INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.80029296875	2	544.298373	1086.58219	1.9705	0.0010725	-1.113	-0.00060583	0.85743	0.0004667	544.2976413635772	34.461	1.0059	34.461	33.799	34.805	0					49	19	3	0	0	0	0.25899	1	13295	13295		72.243	13.461	1	698680			14663	7062	9335	9372	14883	14883					0.04236547708865146
GTLQSQEAK	9	Unmodified	_GTLQSQEAK_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2508239746094	2	481.251089	960.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.165	1	16.165	15.665	16.665	0								0	0	0	0.058887	1	4326	4326		83.647	23.529	1				14664	1930	9336	9373	14884	14884					0.005799891668630153
GTLQSQEAK	9	Unmodified	_GTLQSQEAK_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2508850097656	2	481.251089	960.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.133	1	16.133	15.633	16.633	0								0	0	0	0.15687	1	4552	4552		58.23	8.7884	1				14665	1930	9336	9373	14885	14885					0.005799891668630153
GTLRLVAASN	10	Unmodified	_GTLRLVAASN_					0	0	0			REV__GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant	REV__GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29052734375	2	501.290548	1000.56654	1.1174	0.00056016	-1.0473	-0.00052502	0.070091	3.5136E-05	501.2900241954946	48.763	0.45994	48.763	48.554	49.014	0					41	24	2	0	0	0	0.60147	1	19338	19338		36.447	2.2742	1	67925	+		14666	17468	9337	9374	14886	14886					0.06628261191792717
GTLSESTHK	9	Unmodified	_GTLSESTHK_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000490900.1_1_1:230824170-230825900:+|nuORF;ENST00000478710.1_1_1:230825798-230827388:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2430114746094	2	480.243264	958.471974	-0.1892	-9.0862E-05	-0.14845	-7.1292E-05	-0.33765	-0.00016215	480.24317215968205	14.531	0.21008	14.531	14.445	14.655	0					7	5	2	0	0	0	0.16806	1	3569	3569		65.465	5.3471	1	724330			14667	4021	9338	9375	14887	14887					-0.008922973501739762
GTLSGWILSK	10	Unmodified	_GTLSGWILSK_					0	0	0		CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.3056030273438	2	531.303124	1060.5917	0.12008	6.3797E-05	2.5068	0.0013319	2.6269	0.0013957	531.3043470685695	45.623	0.30334	45.623	45.512	45.816	0					36	17	3	0	0	0	0.08194	1	16943	16943		98.582	38.464	1	346600			14668	363	9339	9376	14888	14888					0.06382315994369492
GTLSGWILSK	10	Unmodified	_GTLSGWILSK_					0	0	0		CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.303466796875	2	531.303124	1060.5917	3.4234	0.0018189	-1.4943	-0.00079393	1.9291	0.0010249	531.3020995081282	45.51	0.50692	45.51	45.412	45.919	0					38	20	3	0	0	0	0.080628	1	18214	18214		99.013	18.558	1	1191100			14669	363	9339	9376	14889	14889					0.06382315994369492
GTLSKLAYGQ	10	Unmodified	_GTLSKLAYGQ_					0	0	0			REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	346.5256652832031	3	346.525713	1036.55531	-1.968	-0.00068195	1.6763	0.00058087	-0.2917	-0.00010108	346.52625009451486	22.554	0.15138	22.554	22.454	22.605	0					6	3	2	0	0	0	0.65051	1	6749	6749		28.081	1.3886	1	195430	+		14670	14488	9340	9377	14890	14890					0.03849439097643881
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF;ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.27166748046875	2	503.271824	1004.5291	-0.054128	-2.7241E-05	3.4073	0.0017148	3.3532	0.0016876	503.27357340991364	36.163	0.43126	36.163	36.055	36.486	0					65	21	4	0	0	0	0.013878	1	11850	11850		132.76	53.045	1	1241500			14671	9094	9341	9378	14891	14891					0.02701169926183411
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF;ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2718200683594	2	503.271824	1004.5291	-0.064208	-3.2314E-05	3.3383	0.0016801	3.2741	0.0016478	503.27348667875646	36.455	0.56197	36.455	36.34	36.902	0					49	15	4	0	0	0	0.0059092	1	13719	13719		154.12	63.749	1	7457200			14672	9094	9341	9378	14892	14892					0.02701169926183411
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF;ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2716369628906	2	503.271824	1004.5291	-0.86424	-0.00043495	1.1902	0.00059901	0.32599	0.00016406	503.27245863710993	36.227	0.26696	36.227	36.144	36.411	0					32	13	4	0	0	0	0.015496	1	12273	12273		129.42	72.7	1	599560			14673	9094	9341	9378	14893	14893					0.02701169926183411
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF;ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2716064453125	2	503.271824	1004.5291	-0.49396	-0.0002486	1.2471	0.00062764	0.75316	0.00037904	503.2724719503925	36.414	0.4067	36.414	36.334	36.741	0					32	11	4	0	0	0	0.0059092	1	14170	14170		154.12	71.878	1	2730300			14674	9094	9341	9378	14894	14894					0.02701169926183411
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF;ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2710876464844	2	503.271824	1004.5291	2.9289	0.001474	0.56208	0.00028288	3.491	0.0017569	503.27203007435793	36.401	0.56295	36.401	36.249	36.812	0					36	11	4	0	0	0	0.00324	1	14112	14112		167.23	71.038	1	6118300			14675	9094	9341	9378	14895	14895					0.02701169926183411
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.2765197753906	2	484.276575	966.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.274	1	34.274	33.774	34.774	0								0	0	0	0.33579	1	11201	11201		28.081	2.5074	1				14676	1669	9342	9379	14896	14896					0.05398938211715176
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2763366699219	2	484.276575	966.538597	-0.1953	-9.4579E-05	-1.8228	-0.00088274	-2.0181	-0.00097732	484.27643324741433	34.57	0.37264	34.57	34.4	34.772	0					13	9	2	0	0	0	0.023928	1	12878	12878		115.49	44.198	1	337560			14677	1669	9342	9379	14897	14897					0.05398938211715176
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2763366699219	2	484.276575	966.538597	-1.2437	-0.00060229	0.63082	0.00030549	-0.61287	-0.0002968	484.276893236471	34.362	0.23973	34.362	34.285	34.525	0					16	10	2	0	0	0	0.18416	1	11578	11578		63.534	14.092	1	144670			14678	1669	9342	9379	14898	14898					0.05398938211715176
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2763977050781	2	484.276575	966.538597	0.66696	0.00032299	-0.44934	-0.0002176	0.21762	0.00010539	484.2761454268454	34.577	0.55029	34.577	34.454	35.004	0					30	15	4	0	0	0	0.035062	1	13328	13328		104.06	32.761	1	717850			14679	1669	9342	9379	14899	14899					0.05398938211715176
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2761535644531	2	484.276575	966.538597	-0.26265	-0.0001272	-0.62547	-0.0003029	-0.88812	-0.0004301	484.276377062054	34.332	0.19237	34.332	34.255	34.447	0					11	6	2	0	0	0	0.28897	1	12132	12132		51.193	8.7966	1	73345			14680	1669	9342	9379	14900	14900					0.05398938211715176
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2761535644531	2	484.276575	966.538597	-2.9173	-0.0014128	1.7902	0.00086694	-1.1272	-0.00054587	484.27755900573305	34.317	0.22389	34.317	34.153	34.376	0					11	7	2	0	0	0	0.51991	1	12126	12126		30.318	1.1682	1	166680			14681	1669	9342	9379	14901	14901					0.05398938211715176
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2764892578125	2	484.276575	966.538597	0.86257	0.00041772	-1.1287	-0.00054658	-0.26608	-0.00012886	484.2758892265868	34.53	0.55391	34.53	34.376	34.93	0					22	11	4	0	0	0	0.012231	1	13232	13232		136.27	48.514	1	913140			14682	1669	9342	9379	14902	14902					0.05398938211715176
GTLSSYIVK	9	Unmodified	_GTLSSYIVK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2763671875	2	484.276575	966.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.539	1	34.539	34.039	35.039	0								0	0	0	0.03526	1	13248	13248		93.143	34.361	1				14683	1669	9342	9379	14903	14903					0.05398938211715176
GTLTITLR	8	Unmodified	_GTLTITLR_					0	0	0		nc|ENSG00000095970|Q9NZC2-2|TREM2;nc|ENSG00000095970|Q9NZC2-3|TREM2;ENSG00000095970|ENST00000373113|TREM2	nc|ENSG00000095970|Q9NZC2-2|TREM2	nc|ENSG00000095970|Q9NZC2-2|TREM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7713928222656	2	437.77146	873.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.214	1	18.214	17.714	18.714	0								0	0	0	1.7419	1	4711	4711		51.335	0	1				14684	1912	9343	9380	14904	14904					0.0865437527713766
GTLTPARQK	9	Unmodified	_GTLTPARQK_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2846984863281	2	486.285266	970.555979	0.012182	5.9239E-06	-0.475	-0.00023099	-0.46282	-0.00022506	486.285014251251	15.24	0.2733	15.24	15.107	15.38	0					20	9	3	0	0	0	0.27249	1	3252	3252		52.937	0	1	606430			14685	2024	9344	9381	14905	14905					0.06952278537380607
GTLTPARQK	9	Unmodified	_GTLTPARQK_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2850646972656	2	486.285266	970.555979	-1.2409	-0.00060345	0.42727	0.00020778	-0.81366	-0.00039567	486.28550158202046	15.276	0.19796	15.276	15.156	15.354	0					15	6	4	0	0	0	0.17854	1	3424	3424		64.207	0	1	469150			14686	2024	9344	9381	14906	14906					0.06952278537380607
GTLTPARQK	9	Unmodified	_GTLTPARQK_					0	0	0		PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	PMM1|p.E103Sfs*6|1|0.05|ENSG00000100417|chr22:41584348-41584348|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2854309082031	2	486.285266	970.555979	0.6432	0.00031278	-0.8402	-0.00040858	-0.19701	-9.5801E-05	486.2848443551487	15.526	0.41191	15.526	15.274	15.686	0					21	8	4	0	0	0	0.048471	1	4249	4249		95.815	8.0609	1	3055000			14687	2024	9344	9381	14907	14907					0.06952278537380607
GTLTQNEMIFK	11	Unmodified	_GTLTQNEMIFK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	641.3299560546875	2	641.329013	1280.64347	0.66434	0.00042606	-0.65118	-0.00041762	0.013165	8.4431E-06	641.3286999532899	38.754	0.21758	38.754	38.68	38.897	0					19	8	3	0	0	0	0.061126	1	14728	14728		99.788	32.294	1	292650			14688	5891;1274	9345	9382	14908	14908					0.014376916259379868
GTLTQNEMIFK	11	Unmodified	_GTLTQNEMIFK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	641.3271484375	2	641.329013	1280.64347	-2.2861	-0.0014661	1.3159	0.00084394	-0.97018	-0.0006222	641.3294900086998	38.501	0.12992	38.501	38.434	38.564	0					12	6	2	0	0	0	0.50799	1	13765	13765		43.651	3.5926	1	54683			14689	5891;1274	9345	9382	14909	14909					0.014376916259379868
GTLTQNEMIFK	11	Unmodified	_GTLTQNEMIFK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	641.3289794921875	2	641.329013	1280.64347	-0.8187	-0.00052505	0.79967	0.00051285	-0.019027	-1.2203E-05	641.3294207171472	38.683	0.21561	38.683	38.577	38.792	0					10	4	3	0	0	0	0.15663	1	15246	15246		79.489	28.296	1	246250			14690	5891;1274	9345	9382	14910	14910					0.014376916259379868
GTLTQNEMIFK	11	Oxidation (M)	_GTLTQNEM(Oxidation (M))IFK_		GTLTQNEM(1)IFK		GTLTQNEM(62)IFK	0	0	1		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	649.8276977539062	2	649.32647	1296.63839	-0.70594	-0.00045839	0.79591	0.0005168	0.089968	5.8419E-05	649.3269819765047	34.475	0.29016	34.475	34.358	34.648	0					16	7	3	0	0	0	0.3077	1	13289	13289		61.765	20.338	1	76893			14691	5891;1274	9345	9383	14911	14911		61			0.0019338776332915586
GTLTSLEYAK	10	Unmodified	_GTLTSLEYAK_					0	0	0			REV__ENSG00000112658|ENST00000265354|SRF	REV__ENSG00000112658|ENST00000265354|SRF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.53045654296875	3	361.529123	1081.56554	3.1154	0.0011263	0.054607	1.9742E-05	3.17	0.0011461	361.52945949903295	14.976	0.26864	14.976	14.777	15.046	0					16	5	4	0	0	0	0.56063	1	3867	3867		38.754	4.832	1	307030	+		14692	14012	9346	9384	14912	14912					0.02802002032240125
GTLTSLFSL	9	Unmodified	_GTLTSLFSL_					0	0	0			REV__CENPP|p.V174Cfs*5|1|0.18|ENSG00000188312|chr9:92379807-92379808|-/T|frameshift_variant	REV__CENPP|p.V174Cfs*5|1|0.18|ENSG00000188312|chr9:92379807-92379808|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7640686035156	2	469.7633	937.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.778	1	37.778	37.278	38.278	0								0	0	0	0.082437	1	14794	14794		76.774	10.345	1		+		14693	12423	9347	9385	14913	14913					0.0407924932038668
GTLVNIPK	8	Unmodified	_GTLVNIPK_					0	0	0			REV__nc|ENSG00000107938|Q3B7T1-4|EDRF1	REV__nc|ENSG00000107938|Q3B7T1-4|EDRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.2605895996094	2	421.260728	840.506903	-0.32519	-0.00013699	-0.10256	-4.3202E-05	-0.42775	-0.00018019	421.26064326611294	31.521	0.71065	31.521	31.224	31.935	0					34	14	3	0	0	0	0.54629	1	11878	11878		55.504	4.1688	1	822170	+		14694	12768	9348	9386	14914	14914					0.0802699024843605
GTLVYLVSR	9	Unmodified	_GTLVYLVSR_					0	0	0			REV__ENSG00000183117|ENST00000635120|CSMD1	REV__ENSG00000183117|ENST00000635120|CSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5340881347656	3	336.53432	1006.58113	-0.67405	-0.00022684	0.40946	0.0001378	-0.26458	-8.9041E-05	336.53450426298315	35.634	0.5406	35.634	35.35	35.891	0					35	26	2	0	0	0	0.61124	1	11980	11980		17.468	0	1	57980	+		14695	16916	9349	9387	14915	14915					0.07810333339955378
GTMAILTTYM	10	Unmodified	_GTMAILTTYM_					0	0	0			REV__ENST00000530851.6_1_11:111724165-111739381:-|nuORF	REV__ENST00000530851.6_1_11:111724165-111739381:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2695922851562	2	551.269578	1100.5246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.167	1	35.167	34.667	35.667	0								0	0	0	0.4201	1	13553	13553		20.947	0.95016	1		+		14696	13373	9350	9388	14916	14916					-0.021637986032601475
GTMAMLIVGI	10	Oxidation (M)	_GTM(Oxidation (M))AMLIVGI_		GTM(0.994)AM(0.006)LIVGI		GTM(22)AM(-22)LIVGI	0	0	1		ENST00000222547.7_1_7:93628507-93628591:-|nuORF	ENST00000222547.7_1_7:93628507-93628591:-|nuORF	ENST00000222547.7_1_7:93628507-93628591:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.1856384277344	3	341.185534	1020.53477	0.36117	0.00012323	-0.1338	-4.5652E-05	0.22737	7.7574E-05	341.1854786223939	20.088	0.46693	20.088	19.978	20.445	0					21	9	4	0	0	0	0.49411	1	6466	6466		45.972	15.655	2	4540900			14697	8180	9351	9389	14917	14917		332			0.025328091220103488
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7698364257812	2	519.769745	1037.52494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.329	1	29.329	28.829	29.829	0								0	0	0	0.11831	1	9245	9245		76.17	33.305	1				14698	6533	9352	9390	14918	14918					0.007676211165971836
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7702026367188	2	519.769745	1037.52494	1.4167	0.00073635	-2.1972	-0.001142	-0.78053	-0.0004057	519.7695825407703	29.575	0.29951	29.575	29.485	29.784	0					17	7	4	0	0	0	0.023179	1	10589	10589		122.94	52.123	1	587890			14699	6533	9352	9390	14919	14919					0.007676211165971836
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7705688476562	2	519.769745	1037.52494	0.22728	0.00011813	-0.78366	-0.00040732	-0.55638	-0.00028919	519.7700256809752	29.318	0.19763	29.318	29.214	29.411	0					19	8	3	0	0	0	0.13663	1	9530	9530		89.029	36.092	1	136510			14700	6533	9352	9390	14920	14920					0.007676211165971836
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7698364257812	2	519.769745	1037.52494	1.6631	0.00086443	-3.4213	-0.0017783	-1.7582	-0.00091384	519.769080500905	29.556	0.81951	29.556	29.239	30.059	0					34	17	4	0	0	0	0.012356	1	10968	10968		133.99	59.738	1	955960			14701	6533	9352	9390	14921	14921					0.007676211165971836
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7698364257812	2	519.769745	1037.52494	0.99732	0.00051838	-1.2555	-0.00065259	-0.25822	-0.00013422	519.7691079295464	29.376	0.12924	29.376	29.297	29.426	0					7	3	3	0	0	0	0.27406	1	9869	9869		70.399	28.002	1	146130			14702	6533	9352	9390	14922	14922					0.007676211165971836
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7697143554688	2	519.769745	1037.52494	-1.3627	-0.00070831	2.6397	0.001372	1.2769	0.00066372	519.7709525698891	29.366	0.1301	29.366	29.285	29.415	0					6	3	2	0	0	0	0.1998	1	9864	9864		79.489	28.154	1	105430			14703	6533	9352	9390	14923	14923					0.007676211165971836
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.77001953125	2	519.769745	1037.52494	1.6141	0.00083897	-1.5126	-0.0007862	0.10153	5.2774E-05	519.7688754058246	29.54	0.25893	29.54	29.341	29.6	0					8	5	2	0	0	0	0.006574	1	10823	10823		160.82	81.109	1	972960			14704	6533	9352	9390	14924	14924					0.007676211165971836
GTMAMTVVTK	10	Unmodified	_GTMAMTVVTK_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7698364257812	2	519.769745	1037.52494	3.3639	0.0017484	-4.3559	-0.0022641	-0.99201	-0.00051562	519.7682419770662	29.519	0.50761	29.519	29.224	29.731	0					23	9	3	0	0	0	0.019261	1	10836	10836		125.71	60.248	1	866780			14705	6533	9352	9390	14925	14925					0.007676211165971836
GTMDMSITRL	10	Unmodified	_GTMDMSITRL_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF;ENST00000485325.1_1_2:112560984-112579093:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7767333984375	2	562.775559	1123.53657	1.8658	0.00105	-1.6205	-0.00091196	0.2453	0.00013805	562.7750836657536	42.586	0.26056	42.586	42.481	42.742	0					38	13	4	0	0	0	0.31894	1	16692	16692		65.157	17.198	1	269850			14706	5037	9353	9391	14926	14926					-0.020261818600602055
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(70)EWIM(70)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.7748413085938	2	570.775028	1139.5355	-0.0055824	-3.1863E-06	-0.23888	-0.00013635	-0.24446	-0.00013953	570.7751475525287	38.491	0.26119	38.491	38.349	38.61	0					26	8	4	0	0	0	0.1424	1	14606	14606		69.628	25.511	1	678030			14707	6077	9354	9392	14927	14927		250;251			-0.02868396228950587
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(77)EWIM(77)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.775390625	2	570.775028	1139.5355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.277	1	38.277	37.777	38.777	0								0	0	0	0.080575	1	12913	12913		77.318	27.876	1				14708	6077	9354	9392	14928	14928		250;251			-0.02868396228950587
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(62)EWIM(62)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.2772216796875	2	570.775028	1139.5355	2.0001	0.0011416	-2.6347	-0.0015038	-0.63463	-0.00036223	570.7739172376745	38.488	0.40536	38.488	38.361	38.766	0					30	14	4	0	0	0	0.19605	1	15080	15080		62.107	10.915	1	307120			14709	6077	9354	9392	14929	14929		250;251			-0.02868396228950587
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(120)EWIM(120)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.7745361328125	2	570.775028	1139.5355	0.074605	4.2583E-05	-0.71753	-0.00040955	-0.64292	-0.00036696	570.7747865806529	38.462	0.21675	38.462	38.35	38.567	0					16	7	3	0	0	0	0.019882	1	15074	15074		122.18	48.201	1	282140			14710	6077	9354	9392	14930	14930		250;251			-0.02868396228950587
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(53)EWIM(53)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.775390625	2	570.775028	1139.5355	-1.3765	-0.0007857	1.8676	0.001066	0.4911	0.00028031	570.7761304041711	38.268	0.23002	38.268	38.148	38.378	0					21	11	3	0	0	0	0.27249	1	13676	13676		52.937	8.8199	1	87085			14711	6077	9354	9392	14931	14931		250;251			-0.02868396228950587
GTMEWIMIK	9	Oxidation (M)	_GTMEWIM(Oxidation (M))IK_		GTMEWIM(1)IK		GTM(-54)EWIM(54)IK	0	0	1		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7781982421875	2	562.77757	1123.54059	0.45086	0.00025374	-0.28307	-0.00015931	0.16779	9.4427E-05	562.7773667994724	44.336	0.22079	44.336	44.234	44.454	0					27	13	3	0	0	0	0.1424	1	16625	16625		69.628	20.092	2	99291			14712	6077	9354	9393	14932	14932		250;251			-0.016240923663644935
GTMEWIMIK	9	Oxidation (M)	_GTM(Oxidation (M))EWIMIK_		GTM(1)EWIMIK		GTM(42)EWIM(-42)IK	0	0	1		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.7772827148438	2	562.77757	1123.54059	0.13093	7.3685E-05	-0.53573	-0.0003015	-0.4048	-0.00022781	562.7774751895673	42.027	0.16971	42.027	41.973	42.142	0					15	10	2	0	0	0	0.17854	1	13893	13893		64.207	21.811	2	95037			14713	6077	9354	9393	14933	14933		250;251			-0.016240923663644935
GTMEWIMIK	9	Oxidation (M)	_GTM(Oxidation (M))EWIMIK_		GTM(1)EWIMIK		GTM(80)EWIM(-80)IK	0	0	1		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7777099609375	2	562.77757	1123.54059	1.8648	0.0010495	-0.89485	-0.0005036	0.96996	0.00054587	562.7770887935895	42.226	0.29769	42.226	42.108	42.406	0					36	14	3	0	0	0	0.037569	1	16563	16563		101.6	41.482	2	562080			14714	6077	9354	9393	14934	14934		250;251			-0.016240923663644935
GTMEWIMIK	9	Oxidation (M)	_GTM(Oxidation (M))EWIMIK_		GTM(1)EWIMIK		GTM(35)EWIM(-35)IK	0	0	1		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7785034179688	2	562.77757	1123.54059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.01	1	42.01	41.51	42.51	0								0	0	0	0.19847	1	14734	14734		51.193	19.663	2				14715	6077	9354	9393	14935	14935		250;251			-0.016240923663644935
GTMEWIMIK	9	Oxidation (M)	_GTM(Oxidation (M))EWIMIK_		GTM(1)EWIMIK		GTM(87)EWIM(-87)IK	0	0	1		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7786254882812	2	562.77757	1123.54059	1.7679	0.00099495	-1.0862	-0.00061127	0.68175	0.00038367	562.7770626577088	42.203	0.42697	42.203	42.095	42.522	0					30	11	4	0	0	0	0.014688	1	16806	16806		131.03	60.215	2	769650			14716	6077	9354	9393	14936	14936		250;251			-0.016240923663644935
GTMEWIMIK	9	Oxidation (M)	_GTM(Oxidation (M))EWIMIK_		GTM(1)EWIMIK		GTM(87)EWIM(-87)IK	0	0	1		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7780151367188	2	562.77757	1123.54059	3.4708	0.0019533	-2.1685	-0.0012204	1.3023	0.00073292	562.7762829389603	42.167	0.28413	42.167	42.088	42.372	0					24	7	4	0	0	0	0.028876	1	16816	16816		110.12	33.95	2	744660			14717	6077	9354	9393	14937	14937		250;251			-0.016240923663644935
GTMEWIMIK	9	Unmodified	_GTMEWIMIK_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7796630859375	2	554.780113	1107.54567	0.59672	0.00033105	-0.68751	-0.00038142	-0.090791	-5.0369E-05	554.7798127065482	48.169	0.13357	48.169	48.091	48.225	0					17	8	3	0	0	0	0.1424	1	17562	17562		69.628	25.25	1	77150			14718	6077	9354	9394	14938	14938					-0.0037978850373292516
GTMEWIMIK	9	Unmodified	_GTMEWIMIK_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7811889648438	2	554.780113	1107.54567	1.6477	0.00091411	-0.26485	-0.00014694	1.3829	0.00076718	554.7800025223099	48.181	0.24505	48.181	48.08	48.325	0					27	14	3	0	0	0	0.07136	1	18274	18274		87.696	34.607	1	172410			14719	6077	9354	9394	14939	14939					-0.0037978850373292516
GTMEWIMIK	9	Unmodified	_GTMEWIMIK_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7822265625	2	554.780113	1107.54567	1.8216	0.0010106	-0.61088	-0.00033891	1.2107	0.00067166	554.7801620477679	48.106	0.24799	48.106	48.018	48.266	0					35	12	5	0	0	0	0.1424	1	19121	19121		69.628	9.5094	1	392260			14720	6077	9354	9394	14940	14940					-0.0037978850373292516
GTMGVSKHK	9	Unmodified	_GTMGVSKHK_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;nc|ENSG00000125676|Q8NI27-2|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.75238037109375	2	472.752744	943.490935	-0.33956	-0.00016053	-0.69597	-0.00032902	-1.0355	-0.00048955	472.75242054782996	12.611	0.07144	12.611	12.576	12.648	0					9	4	3	0	0	0	0.22837	1	2406	2406		58.23	10.314	1	164520			14721	3426	9355	9395	14941	14941					0.016929607398765256
GTMGVSKHK	9	Unmodified	_GTMGVSKHK_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;nc|ENSG00000125676|Q8NI27-2|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.75238037109375	2	472.752744	943.490935	-0.55595	-0.00026283	-0.51547	-0.00024369	-1.0714	-0.00050652	472.7527082489582	12.924	0.21986	12.924	12.826	13.046	0					20	6	5	0	0	0	0.048471	1	2804	2804		95.815	29.386	1	1975700			14722	3426	9355	9395	14942	14942					0.016929607398765256
GTMGVSKHK	9	Unmodified	_GTMGVSKHK_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;nc|ENSG00000125676|Q8NI27-2|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7523498535156	2	472.752744	943.490935	-0.70958	-0.00033545	-0.44349	-0.00020966	-1.1531	-0.00054512	472.7525870816853	12.624	0.12054	12.624	12.59	12.71	0					9	7	2	0	0	0	0.035062	1	2510	2510		104.06	32.761	1	280380			14723	3426	9355	9395	14943	14943					0.016929607398765256
GTMGVSKHK	9	Unmodified	_GTMGVSKHK_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;nc|ENSG00000125676|Q8NI27-2|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7524108886719	2	472.752744	943.490935	-0.69294	-0.00032759	0.07869	3.7201E-05	-0.61425	-0.00029039	472.752969238424	12.879	0.26747	12.879	12.787	13.054	0					13	6	3	0	0	0	0.056004	1	2992	2992		93.143	24.659	1	2500500			14724	3426	9355	9395	14944	14944					0.016929607398765256
GTMHVPESAPK	11	Unmodified	_GTMHVPESAPK_					0	0	0			REV__ENSG00000136932|ENST00000375119|TRMO	REV__ENSG00000136932|ENST00000375119|TRMO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.1949768066406	3	385.193858	1152.55974	-0.60591	-0.00023339	3.2431	0.0012492	2.6372	0.0010158	385.1951824968417	17.939	0.15938	17.939	17.834	17.994	0					8	3	3	0	0	0	0.50799	1	5281	5281		43.651	4.9367	1	2361300	+		14725	14894	9356	9396	14945	14945					-0.010434197510903687
GTMKAQGVLLK	11	Unmodified	_GTMKAQGVLLK_					0	0	0		nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.3397827148438	2	573.339184	1144.66381	1.0663	0.00061133	-0.11908	-6.8275E-05	0.94719	0.00054306	573.3390199555553	25.296	0.14833	25.296	25.214	25.362	0					9	4	3	0	0	0	0.21704	1	7604	7604		72.243	2.6156	1	116330			14726	11627	9357	9397	14946	14946					0.0972690707642414
GTMKAQGVLLK	11	Unmodified	_GTMKAQGVLLK_					0	0	0		nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.3395385742188	2	573.339184	1144.66381	-0.12327	-7.0678E-05	0.2906	0.00016661	0.16733	9.5936E-05	573.3394428455485	25.581	0.22145	25.581	25.482	25.704	0					16	5	4	0	0	0	0.0036452	1	8767	8767		128.6	23.856	1	1413200			14727	11627	9357	9397	14947	14947					0.0972690707642414
GTMKAQGVLLK	11	Unmodified	_GTMKAQGVLLK_					0	0	0		nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.3399047851562	2	573.339184	1144.66381	0.071351	4.0908E-05	0.34156	0.00019583	0.41291	0.00023674	573.3396673871766	25.33	0.15427	25.33	25.253	25.407	0					12	5	3	0	0	0	0.07149	1	7855	7855		96.665	38.435	1	195710			14728	11627	9357	9397	14948	14948					0.0972690707642414
GTMKAQGVLLK	11	Unmodified	_GTMKAQGVLLK_					0	0	0		nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.3399658203125	2	573.339184	1144.66381	2.0073	0.0011509	-1.3467	-0.00077212	0.66059	0.00037874	573.338584353899	25.544	0.2111	25.544	25.442	25.653	0					13	4	4	0	0	0	5.8282E-05	1	9091	9091		157.34	9.6514	1	1724400			14729	11627	9357	9397	14949	14949					0.0972690707642414
GTMKAQGVLLK	11	Unmodified	_GTMKAQGVLLK_					0	0	0		nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.5616455078125	3	382.561881	1144.66381	0.45106	0.00017256	-1.1763	-0.00045	-0.72523	-0.00027744	382.5615093462607	25.578	0.26173	25.578	25.476	25.738	0					13	5	4	0	0	0	0.37057	1	9082	9082		72.096	23.494	1	1288800			14730	11627	9357	9397	14950	14950					0.0972690707642414
GTMKAQGVLLK	11	Unmodified	_GTMKAQGVLLK_					0	0	0		nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.3392333984375	2	573.339184	1144.66381	-1.4708	-0.00084326	1.2342	0.00070761	-0.23659	-0.00013565	573.3400377982348	25.382	0.19227	25.382	25.282	25.474	0					8	4	3	0	0	0	0.093595	1	8070	8070		91.265	29.158	1	333260			14731	11627	9357	9397	14951	14951					0.0972690707642414
GTMMETLSR	9	Unmodified	_GTMMETLSR_					0	0	0		ENSG00000156413|ENST00000318336|FUT6;ENSG00000171124|ENST00000303225|FUT3;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5	ENSG00000156413|ENST00000318336|FUT6	ENSG00000156413|ENST00000318336|FUT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2421875	2	513.241352	1024.46815	3.1588	0.0016212	-0.24595	-0.00012623	2.9128	0.001495	513.241282516257	31.641	0.26367	31.641	31.437	31.701	0					8	5	2	0	0	0	0.054723	1	11867	11867		93.598	29.39	1	409630			14732	3639	9358	9398	14952	14952					-0.04310426439906223
GTMNLGGSLTR	11	Unmodified	_GTMNLGGSLTR_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.78515625	2	553.784773	1105.55499	1.3151	0.00072828	-0.87453	-0.0004843	0.44056	0.00024398	553.7842963313442	32.07	0.19753	32.07	31.976	32.173	0					17	8	3	0	0	0	0.25906	1	10336	10336		67.214	12.492	1	290920			14733	1587	9359	9399	14953	14953					0.006436961061581314
GTMNLGGSLTR	11	Unmodified	_GTMNLGGSLTR_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7849731445312	2	553.784773	1105.55499	0.61309	0.00033952	0.013141	7.2774E-06	0.62623	0.0003468	553.7848164020697	32.339	0.25244	32.339	32.251	32.503	0					18	6	4	0	0	0	4.4639E-05	1	11851	11851		163.84	57.156	1	1152300			14734	1587	9359	9399	14954	14954					0.006436961061581314
GTMNLGGSLTR	11	Unmodified	_GTMNLGGSLTR_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.784912109375	2	553.784773	1105.55499	-0.41247	-0.00022842	0.24006	0.00013294	-0.17241	-9.5477E-05	553.7851793619141	32.113	0.19485	32.113	32.036	32.231	0					21	8	3	0	0	0	0.23231	1	10690	10690		70.412	15.689	1	216600			14735	1587	9359	9399	14955	14955					0.006436961061581314
GTMNLGGSLTR	11	Unmodified	_GTMNLGGSLTR_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7847900390625	2	553.784773	1105.55499	0.00551	3.0514E-06	0.3493	0.00019343	0.35481	0.00019649	553.7850648539379	32.314	0.3157	32.314	32.208	32.524	0					21	7	4	0	0	0	5.6407E-05	1	12255	12255		158.47	57.218	1	1383000			14736	1587	9359	9399	14956	14956					0.006436961061581314
GTMPLSVC	8	Unmodified	_GTMPLSVC_					0	0	0		ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.1903991699219	2	404.1906	806.366646	-0.11031	-4.4588E-05	-0.054739	-2.2125E-05	-0.16505	-6.6712E-05	404.190354625025	14.252	0.08556	14.252	14.196	14.282	0					5	3	2	0	0	0	0.70055	1	2918	2918		33.516	6.7195	1	95017			14737	3036	9360	9400	14957	14957					-0.04428253071819199
GTMSILGTMSR	11	Unmodified	_GTMSILGTMSR_					0	0	0			REV__ENST00000514264.6_1_17:49242904-49243033:+|nuORF	REV__ENST00000514264.6_1_17:49242904-49243033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.1949462890625	3	385.194981	1152.56311	0.57087	0.0002199	-1.0773	-0.00041495	-0.50638	-0.00019506	385.19470940201694	17.923	0.20881	17.923	17.867	18.076	0					10	4	3	0	0	0	0.52595	1	5273	5273		42.338	0	1	2520600	+		14738	19900	9361	9401	14958	14958					-0.007064929686976029
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(99)TGM(99)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.23876953125	2	517.238278	1032.462	1.361	0.00070396	-0.62628	-0.00032393	0.73472	0.00038002	517.2379985740861	21.101	0.33643	21.101	20.99	21.326	0					15	9	2	0	0	0	0.0406	1	5751	5751		98.629	56.233	1	331270			14739	6716	9362	9402	14959	14959		275;276			-0.05292944671418809
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(96)TGM(96)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.23828125	2	517.238278	1032.462	1.292	0.00066827	-1.4232	-0.00073612	-0.13118	-6.785E-05	517.2378686120329	21.395	0.52648	21.395	21.311	21.837	0					39	12	4	0	0	0	0.048471	1	6788	6788		95.815	31.608	1	1770700			14740	6716	9362	9402	14960	14960		275;276			-0.05292944671418809
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(99)TGM(99)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2389526367188	2	517.238278	1032.462	0.036931	1.9102E-05	0.39236	0.00020294	0.42929	0.00022204	517.2386177334507	21.117	0.82559	21.117	20.965	21.791	0					52	25	4	0	0	0	0.0406	1	5994	5994		98.629	57.851	1	413310			14741	6716	9362	9402	14961	14961		275;276			-0.05292944671418809
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(130)TGM(130)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.238525390625	2	517.238278	1032.462	1.5161	0.00078419	-1.1723	-0.00060635	0.34382	0.00017784	517.2377753949182	21.335	0.61734	21.335	21.208	21.825	0					32	12	3	0	0	0	0.014688	1	7038	7038		131.03	51.319	1	2736800			14742	6716	9362	9402	14962	14962		275;276			-0.05292944671418809
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(62)TGM(62)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7406005859375	2	517.238278	1032.462	0.87363	0.00045188	-0.86601	-0.00044794	0.007618	3.9403E-06	517.2381037793981	21.243	0.47807	21.243	21.064	21.542	0					23	10	3	0	0	0	0.19605	1	6075	6075		62.107	19.711	1	290160			14743	6716	9362	9402	14963	14963		275;276			-0.05292944671418809
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(62)TGM(-62)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2408752441406	2	509.240821	1016.46709	0.99269	0.00050552	-1.4442	-0.00073544	-0.45149	-0.00022992	509.2403854368986	25.873	0.98458	25.873	25.744	26.729	0					73	29	4	0	0	0	0.014688	2	7805	7805;7947		131.03	22.944	2	2027800			14744	6716	9362	9403	14964;14965	14964		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-58)TGM(58)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.24041748046875	2	509.240821	1016.46709	-0.10719	-5.4584E-05	-0.6247	-0.00031812	-0.73188	-0.00037271	509.2407622037758	26.816	0.81887	26.816	26.68	27.499	0					72	29	5	0	0	0	0.032052	1	8171	8171		107.01	48.226	2	3108300			14745	6716	9362	9403	14966	14966		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(78)TGM(-78)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2407531738281	2	509.240821	1016.46709	0.93362	0.00047544	-1.6779	-0.00085446	-0.7443	-0.00037903	509.2403263668806	26.129	1.4316	26.129	26	27.431	0					112	34	5	0	0	0	0.0051608	2	8964	8964;9138		157.33	55.728	2	16546000			14746	6716	9362	9403	14967;14968	14967		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-59)TGM(59)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.24078369140625	2	509.240821	1016.46709	-0.017376	-8.8488E-06	-0.67127	-0.00034184	-0.68865	-0.00035069	509.24075422322437	27.046	2.5318	27.046	26.914	29.445	0					123	62	6	0	0	0	0.032052	1	9375	9375		107.01	30.233	2	19297000			14747	6716	9362	9403	14969	14969		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-37)TGM(37)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2392883300781	2	509.240821	1016.46709	-0.5077	-0.00025854	-0.18348	-9.3436E-05	-0.69118	-0.00035198	509.24108698962715	26.841	0.51928	26.841	26.686	27.205	0					60	18	5	0	0	0	0.33044	1	8452	8452		47.657	6.8792	2	3279200			14748	6716	9362	9403	14970	14970		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-48)TGM(48)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2406005859375	2	509.240821	1016.46709	-0.38441	-0.00019576	-0.3922	-0.00019972	-0.7766	-0.00039548	509.2408571630324	26.821	0.32445	26.821	26.723	27.048	0					31	11	4	0	0	0	0.17854	1	8458	8458		64.207	21.343	2	768650			14749	6716	9362	9403	14971	14971		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(52)TGM(-52)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2406921386719	2	509.240821	1016.46709	0.22838	0.0001163	-1.0463	-0.0005328	-0.81789	-0.0004165	509.24066349883356	26.142	2.7118	26.142	25.983	28.695	0					99	55	4	0	0	0	0.014688	2	9283	9283;9474		131.03	41.908	2	6271100			14750	6716	9362	9403	14972;14973	14972		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(0.997)TGM(0.003)LYK		GTM(25)TGM(-25)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2415466308594	2	509.240821	1016.46709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.227	1	30.227	29.727	30.727	0								0	0	0	0.22284	1	11277	11277		47.657	12.039	2				14751	6716	9362	9403	14974	14974		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(50)TGM(-50)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.24169921875	2	509.240821	1016.46709	1.1668	0.00059417	1.2313	0.00062704	2.3981	0.0012212	509.2416464743674	26.125	0.93954	26.125	25.738	26.677	0					36	17	3	0	0	0	0.021961	1	9300	9300		118.74	52.314	2	3871100			14752	6716	9362	9403	14975	14975		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-52)TGM(52)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.24053955078125	2	509.240821	1016.46709	1.169	0.00059532	-2.0215	-0.0010294	-0.8525	-0.00043413	509.23999444944053	27.063	1.063	27.063	26.41	27.473	0					61	21	5	0	0	0	0.021961	1	9748	9748		118.74	19.368	2	15747000			14753	6716	9362	9403	14976	14976		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-60)TGM(60)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2405090332031	2	509.240821	1016.46709	-0.40579	-0.00020665	-0.34303	-0.00017469	-0.74882	-0.00038133	509.2408867429517	27.047	0.51118	27.047	26.944	27.455	0					29	10	4	0	0	0	0.021961	1	9740	9740		118.74	39.292	2	5667700			14754	6716	9362	9403	14977	14977		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(67)TGM(-67)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2406005859375	2	509.240821	1016.46709	0.62053	0.000316	-1.1424	-0.00058175	-0.52185	-0.00026575	509.24054806751224	25.93	1.2525	25.93	25.789	27.041	0					50	27	4	0	0	0	0.0086566	2	8281	8281;8443		143.89	35.799	2	1558100			14755	6716	9362	9403	14978;14979	14978		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(64)TGM(-64)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2410583496094	2	509.240821	1016.46709	0.20147	0.00010259	-0.56114	-0.00028575	-0.35967	-0.00018316	509.2408956849632	25.958	1.2863	25.958	25.778	27.064	0					61	28	5	0	0	0	0.0086566	1	8273	8273		143.89	75.1	2	1827600			14756	6716	9362	9403	14980	14980		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-58)TGM(58)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2406921386719	2	509.240821	1016.46709	-1.8542	-0.00094421	1.3202	0.00067232	-0.53391	-0.00027189	509.24178897395956	26.901	0.81218	26.901	26.764	27.576	0					47	20	4	0	0	0	0.032052	1	8697	8697		107.01	49.196	2	3063300			14757	6716	9362	9403	14981	14981		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(64)TGM(-64)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.24078369140625	2	509.240821	1016.46709	-0.042919	-2.1856E-05	-0.65134	-0.00033169	-0.69426	-0.00035355	509.24096006807036	26.088	1.323	26.088	25.949	27.272	0					90	26	5	0	0	0	0.0086566	3	9144	9144;9314;9484		143.89	37.836	2	11932000			14758	6716	9362	9403	14982;14983;14984	14982		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(50)TGM(-50)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2416687011719	2	509.240821	1016.46709	1.3439	0.00068435	-1.3547	-0.00068989	-0.01087	-5.5356E-06	509.2405836052491	26.093	1.1651	26.093	25.837	27.002	0					60	23	5	0	0	0	0.021961	1	9141	9141		118.74	28.373	2	10964000			14759	6716	9362	9403	14985	14985		275;276			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTMTGM(Oxidation (M))LYK_		GTMTGM(1)LYK		GTM(-72)TGM(72)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2407531738281	2	509.240821	1016.46709	3.0118	0.0015337	-3.8062	-0.0019383	-0.7944	-0.00040454	509.23931592768633	27.027	0.87143	27.027	26.57	27.441	0					54	17	6	0	0	0	0.014688	1	9610	9610		131.03	24.616	2	23124000			14760	6716	9362	9403	14986	14986		275;276			-0.04048640808809978
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2430725097656	2	501.243363	1000.47217	-0.045025	-2.2568E-05	-0.57171	-0.00028657	-0.61674	-0.00030913	501.24341124504434	32.883	0.5646	32.883	32.773	33.338	0					83	24	6	0	0	0	0.021961	2	10642	10642;10765		118.74	47.447	1	11769000			14761	6716	9362	9404	14987;14988	14987					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2428894042969	2	501.243363	1000.47217	-0.10965	-5.4962E-05	-0.073323	-3.6753E-05	-0.18298	-9.1715E-05	501.2437954062956	33.144	0.68901	33.144	33.009	33.698	0					75	18	6	0	0	0	0.021961	2	12205	12205;12380		118.74	54.536	1	51634000			14762	6716	9362	9404	14989;14990	14989					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2431335449219	2	501.243363	1000.47217	-0.96468	-0.00048354	0.65872	0.00033018	-0.30596	-0.00015336	501.24416336313453	32.96	0.99109	32.96	32.794	33.785	0					132	39	6	0	0	0	0.0049871	2	11006	11006;11142		158.07	78.362	1	29372000			14763	6716	9362	9404	14991;14992	14991					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2439270019531	2	501.243363	1000.47217	0.94177	0.00047206	-0.84309	-0.00042259	0.098682	4.9464E-05	501.2435462238151	33.145	1.0498	33.145	32.962	34.012	0					92	25	7	0	0	0	0.014688	2	12650	12650;12830		131.03	48.726	1	137060000			14764	6716	9362	9404	14993;14994	14993					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.24273681640625	2	501.243363	1000.47217	-0.57443	-0.00028793	-0.67335	-0.00033751	-1.2478	-0.00062544	501.24309830891826	33.132	0.26009	33.132	33.036	33.296	0					11	6	3	0	0	0	0.098791	1	12665	12665		79.713	13.909	1	231110			14765	6716	9362	9404	14995	14995					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2438049316406	2	501.243363	1000.47217	0.14686	7.3615E-05	-0.38264	-0.0001918	-0.23578	-0.00011818	501.2436238679318	32.931	0.88417	32.931	32.805	33.689	0					73	25	5	0	0	0	0.0086566	1	11495	11495		143.89	61.646	1	27644000			14766	6716	9362	9404	14996	14996					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.24359130859375	2	501.243363	1000.47217	-2.1067	-0.0010559	1.9347	0.00096973	-0.172	-8.6215E-05	501.2447164237458	32.923	0.95196	32.923	32.789	33.741	0					80	27	5	0	0	0	0.07136	2	11637	11472;11637		87.696	32.92	1	31794000			14767	6716	9362	9404	14997;14998	14998					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2431640625	2	501.243363	1000.47217	1.1214	0.00056208	-0.96298	-0.00048269	0.15839	7.9394E-05	501.24350628249664	33.099	0.69582	33.099	33.004	33.7	0					65	14	6	0	0	0	0.0086566	1	12531	12531		143.89	53.517	1	156850000			14768	6716	9362	9404	14999	14999					-0.02804336946201147
GTMTGMLYK	9	Unmodified	_GTMTGMLYK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.243408203125	2	501.243363	1000.47217	2.924	0.0014656	-2.7735	-0.0013902	0.15041	7.5391E-05	501.2424799301154	33.127	1.2962	33.127	32.693	33.989	0					87	27	6	0	0	0	0.021961	2	12521	12521;12716		118.74	36.438	1	154550000			14769	6716	9362	9404	15000;15001	15000					-0.02804336946201147
GTMVCAFLI	9	Unmodified	_GTMVCAFLI_					0	0	0		nc|ENSG00000274391|P56180-4|TPTE;TPTE|p.I462Yfs*2|1|0.16|ENSG00000274391|chr21:10602082-10602082|A/-|frameshift_variant;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE	nc|ENSG00000274391|P56180-4|TPTE	nc|ENSG00000274391|P56180-4|TPTE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7427673339844	2	477.742999	953.471446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.768	1	28.768	28.268	29.268	0								0	0	0	0.30835	1	10204	10204		33.516	1.5607	1				14770	8098	9363	9405	15002	15002					-0.007151315952455661
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7870178222656	2	457.78711	913.559667	0.05298	2.4254E-05	-0.5924	-0.00027119	-0.53942	-0.00024694	457.7868007408275	32.235	0.23324	32.235	32.151	32.385	0					24	10	3	0	0	0	0.063171	1	10399	10399		90.601	16.346	1	264160			14771	11413	9364	9406	15003	15003					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.78704833984375	2	457.78711	913.559667	-1.0049	-0.00046001	0.24659	0.00011289	-0.75826	-0.00034712	457.7872103993662	32.274	0.28291	32.274	32.186	32.469	0					29	12	3	0	0	0	0.0040894	1	10748	10748		162.25	57.506	1	575070			14772	11413	9364	9406	15004	15004					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7867431640625	2	457.78711	913.559667	0.010555	4.8321E-06	-0.40124	-0.00018368	-0.39068	-0.00017885	457.7868408311631	32.292	0.12891	32.292	32.214	32.343	0					8	3	3	0	0	0	0.037924	1	11208	11208		101.25	44.532	1	139770			14773	11413	9364	9406	15005	15005					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7867126464844	2	457.78711	913.559667	0.17355	7.9447E-05	-0.98724	-0.00045195	-0.8137	-0.0003725	457.7865571776948	32.317	0.29011	32.317	32.168	32.458	0					16	8	3	0	0	0	0.032052	1	11201	11201		107.01	16.638	1	283620			14774	11413	9364	9406	15006	15006					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.78692626953125	2	457.78711	913.559667	-2.6444	-0.0012106	1.9552	0.00089508	-0.68914	-0.00031548	457.78806286034296	32.31	0.25904	32.31	32.188	32.447	0					15	7	3	0	0	0	0.24334	1	11195	11195		56.434	11.412	1	299250			14775	11413	9364	9406	15007	15007					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.78692626953125	2	457.78711	913.559667	-0.43775	-0.0002004	0.20431	9.3529E-05	-0.23345	-0.00010687	457.7872228578135	32.48	0.26858	32.48	32.371	32.64	0					15	5	4	0	0	0	0.0071053	1	12261	12261		148.99	37.339	1	1065600			14776	11413	9364	9406	15008	15008					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		nc|ENSG00000006712|Q8N7H5-2|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	nc|ENSG00000006712|Q8N7H5-2|PAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.786865234375	2	457.78711	913.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.473	1	32.473	31.973	32.973	0								0	0	0	0.018912	1	12247	12247		101.25	31.625	1				14777	11413	9364	9406	15009	15009					0.09942948311243072
GTNAMDSPLLK	11	Unmodified	_GTNAMDSPLLK_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.7950439453125	2	573.794806	1145.57506	0.068002	3.9019E-05	0.69596	0.00039934	0.76396	0.00043836	573.7950642819811	34.288	0.11911	34.288	34.245	34.365	0					8	5	2	0	0	0	0.48922	1	11564	11564		45.022	4.964	1	56844			14778	2356	9365	9407	15010	15010					0.008094470461173842
GTNAQPQVTI	10	Unmodified	_GTNAQPQVTI_					0	0	0			REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7722778320312	2	514.772188	1027.52982	0.024033	1.2372E-05	-0.59675	-0.00030719	-0.57272	-0.00029482	514.7720049911279	35.747	0.23854	35.747	35.664	35.903	0					10	6	2	0	0	0	0.48965	1	13434	13434		46.457	2.34	1	470860	+		14779	20964	9366	9408	15011	15011					0.017159645752371944
GTNDGPALKK	10	Unmodified	_GTNDGPALKK_					0	0	0		nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3;ENST00000551009.5_1_12:89997895-90004207:-|nuORF;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.1854553222656	3	334.185579	999.534909	-0.010018	-3.348E-06	-0.23452	-7.8372E-05	-0.24453	-8.172E-05	334.18551830727193	15.752	0.26897	15.752	15.546	15.815	0					10	5	3	0	0	0	0.63224	1	4215	4215		42.338	2.2799	1	300350			14780	1305;1416;1463;5197	9367	9409	15012	15012					0.03512268437839339
GTNEFKFLK	9	Unmodified	_GTNEFKFLK_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120327|ENST00000239449|PCDHB14;ENSG00000113212|ENST00000231137|PCDHB7;ENSG00000112852|ENST00000194155|PCDHB2	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.8659973144531	3	361.865958	1082.57605	1.1706	0.00042359	-1.1647	-0.00042146	0.0058777	2.1269E-06	361.8655218172132	32.918	0.35314	32.918	32.754	33.107	0					15	7	3	0	0	0	0.45358	1	12442	12442		52.937	24.855	1	1350400			14781	2784	9368	9410	15013	15013					0.03806029477323136
GTNFPNKIEK	10	Unmodified	_GTNFPNKIEK_					0	0	0		ENST00000494139.1_1_13:24416692-24444322:-|nuORF;MIPEP|p.Q439Sfs*19|1|0.32|ENSG00000027001|chr13:23839673-23839673|A/-|frameshift_variant;ENSG00000027001|ENST00000382172|MIPEP	ENST00000494139.1_1_13:24416692-24444322:-|nuORF	ENST00000494139.1_1_13:24416692-24444322:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.3095703125	2	574.308938	1146.60332	-0.18301	-0.00010511	0.90752	0.0005212	0.72451	0.00041609	574.3096394254671	22.648	0.10686	22.648	22.554	22.661	0					5	3	2	0	0	0	0.51765	1	6695	6695		46.457	7.2039	1	73927			14782	1135	9369	9411	15014	15014					0.03588513017712103
GTNFPNKIEK	10	Unmodified	_GTNFPNKIEK_					0	0	0		ENST00000494139.1_1_13:24416692-24444322:-|nuORF;MIPEP|p.Q439Sfs*19|1|0.32|ENSG00000027001|chr13:23839673-23839673|A/-|frameshift_variant;ENSG00000027001|ENST00000382172|MIPEP	ENST00000494139.1_1_13:24416692-24444322:-|nuORF	ENST00000494139.1_1_13:24416692-24444322:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.3090209960938	2	574.308938	1146.60332	-0.1737	-9.9757E-05	0.59754	0.00034317	0.42384	0.00024341	574.3092303370735	22.836	0.16696	22.836	22.728	22.894	0					8	3	3	0	0	0	0.21778	1	7796	7796		83.647	18.182	1	406760			14783	1135	9369	9411	15015	15015					0.03588513017712103
GTNFTKLEK	9	Unmodified	_GTNFTKLEK_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2855224609375	2	519.284931	1036.55531	0.56552	0.00029367	-0.12977	-6.7387E-05	0.43575	0.00022628	519.2849601601243	22.431	0.21488	22.431	22.346	22.561	0					15	6	4	0	0	0	0.024312	1	6328	6328		98.582	45.645	1	1005800			14784	2915	9370	9412	15016	15016					0.03849439097643881
GTNFTKLEK	9	Unmodified	_GTNFTKLEK_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	346.5255432128906	3	346.525713	1036.55531	-0.78542	-0.00027217	0.72505	0.00025125	-0.060377	-2.0922E-05	346.52593359982706	22.472	0.14977	22.472	22.393	22.542	0					9	4	3	0	0	0	0.30841	1	6614	6614		49.536	9.4779	1	884670			14785	2915	9370	9412	15017	15017					0.03849439097643881
GTNFTKLEK	9	Unmodified	_GTNFTKLEK_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2849731445312	2	519.284931	1036.55531	-1.3697	-0.00071127	1.3969	0.00072537	0.027151	1.4099E-05	519.2858011688808	22.554	0.19629	22.554	22.454	22.65	0					9	4	3	0	0	0	0.058553	1	6725	6725		85.862	46.609	1	778550			14786	2915	9370	9412	15018	15018					0.03849439097643881
GTNGFISVVK	10	Unmodified	_GTNGFISVVK_					0	0	0			REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	341.19384765625	3	341.194075	1020.5604	0.21719	7.4104E-05	-0.51635	-0.00017618	-0.29916	-0.00010207	341.19383409179903	18.426	0.10212	18.426	18.346	18.448	0					7	4	2	0	0	0	0.6796	1	4577	4577		17.833	0	1	89070	+		14787	16073	9371	9413	15019	15019					0.05093742960286818
GTNGPVDLKK	10	Unmodified	_GTNGPVDLKK_					0	0	0		ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.790283203125	2	514.790381	1027.56621	0.12807	6.5929E-05	0.50311	0.000259	0.63118	0.00032493	514.7902809789695	19.129	0.11182	19.129	19.054	19.166	0					5	3	2	0	0	0	0.4287	1	4882	4882		53.089	17.471	1	131700			14788	5679	9372	9414	15020	15020					0.05352841471949432
GTNGPVDLKK	10	Unmodified	_GTNGPVDLKK_					0	0	0		ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7904052734375	2	514.790381	1027.56621	0.02519	1.2967E-05	-0.084695	-4.36E-05	-0.059505	-3.0633E-05	514.7904389900278	19.439	0.27686	19.439	19.339	19.616	0					12	6	3	0	0	0	0.1998	1	5873	5873		79.489	10.702	1	775300			14789	5679	9372	9414	15021	15021					0.05352841471949432
GTNGPVDLKK	10	Unmodified	_GTNGPVDLKK_					0	0	0		ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7905883789062	2	514.790381	1027.56621	3.2225	0.0016589	-3.0764	-0.0015837	0.14615	7.5236E-05	514.7889201190062	19.318	0.26359	19.318	19.26	19.524	0					10	5	3	0	0	0	0.3783	1	5965	5965		58.63	14.252	1	634360			14790	5679	9372	9414	15022	15022					0.05352841471949432
GTNHPDVAK	9	Unmodified	_GTNHPDVAK_					0	0	0		ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4	ENST00000467906.5_1_6:43030654-43039600:+|nuORF	ENST00000467906.5_1_6:43030654-43039600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.73779296875	2	469.738148	937.461744	0.20253	9.5135E-05	-0.77857	-0.00036573	-0.57605	-0.00027059	469.73776377739193	14.068	0.13937	14.068	14.016	14.156	0					8	3	3	0	0	0	0.10506	1	3357	3357		78.264	4.0087	1	481790			14791	4146	9373	9415	15023	15023					-0.009488602847568472
GTNHPDVAK	9	Unmodified	_GTNHPDVAK_					0	0	0		ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4	ENST00000467906.5_1_6:43030654-43039600:+|nuORF	ENST00000467906.5_1_6:43030654-43039600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.73797607421875	2	469.738148	937.461744	-0.52895	-0.00024847	-0.066007	-3.1006E-05	-0.59496	-0.00027947	469.7381270511564	14.018	0.11238	14.018	13.961	14.073	0					4	2	2	0	0	0	0.063171	1	3404	3404		90.601	26.394	1	114760			14792	4146	9373	9415	15024	15024					-0.009488602847568472
GTNHPDVAK	9	Unmodified	_GTNHPDVAK_					0	0	0		ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4	ENST00000467906.5_1_6:43030654-43039600:+|nuORF	ENST00000467906.5_1_6:43030654-43039600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.73779296875	2	469.738148	937.461744	0.53384	0.00025077	-1.1203	-0.00052624	-0.58644	-0.00027548	469.737464955713	14.048	0.2593	14.048	13.946	14.205	0					7	5	2	0	0	0	0.017421	1	3400	3400		126.24	46.792	1	235890			14793	4146	9373	9415	15025	15025					-0.009488602847568472
GTNHQLTVK	9	Unmodified	_GTNHQLTVK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.27545166015625	2	499.274898	996.535243	0.29112	0.00014535	-0.080394	-4.0139E-05	0.21073	0.00010521	499.27488976524086	16.668	0.068001	16.668	16.632	16.7	0					4	2	2	0	0	0	0.099758	1	3844	3844		79.489	30.048	1	70368			14794	4488	9374	9416	15026	15026					0.03683688157695997
GTNHQLTVK	9	Unmodified	_GTNHQLTVK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2748107910156	2	499.274898	996.535243	0.67599	0.00033751	-0.81166	-0.00040524	-0.13567	-6.7737E-05	499.27454447226927	16.983	0.2519	16.983	16.82	17.071	0					8	6	2	0	0	0	0.032181	1	4720	4720		106.88	40.451	1	542150			14795	4488	9374	9416	15027	15027					0.03683688157695997
GTNHQLTVK	9	Unmodified	_GTNHQLTVK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.27490234375	2	499.274898	996.535243	-0.01511	-7.5443E-06	0.037629	1.8787E-05	0.022519	1.1243E-05	499.2749113679152	16.972	0.11726	16.972	16.863	16.98	0					4	2	2	0	0	0	0.015992	1	4943	4943		128.6	62.173	1	253050			14796	4488	9374	9416	15028	15028					0.03683688157695997
GTNHQLTVK	9	Unmodified	_GTNHQLTVK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2743835449219	2	499.274898	996.535243	-0.33556	-0.00016754	0.00874	4.3637E-06	-0.32682	-0.00016317	499.27442380789364	16.758	0.10118	16.758	16.693	16.794	0					5	3	2	0	0	0	0.28504	1	4044	4044		51.528	14.02	1	46009			14797	4488	9374	9416	15029	15029					0.03683688157695997
GTNHQLTVK	9	Unmodified	_GTNHQLTVK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.27471923828125	2	499.274898	996.535243	-0.73095	-0.00036494	0.47345	0.00023638	-0.2575	-0.00012856	499.2751746537179	16.9	0.20852	16.9	16.796	17.005	0					8	4	3	0	0	0	0.046074	1	4783	4783		96.665	47.129	1	353410			14798	4488	9374	9416	15030	15030					0.03683688157695997
GTNKVASQK	9	Unmodified	_GTNKVASQK_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3;ENST00000401596.1_1_6:6535542-6535761:+|nuORF	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.76123046875	2	466.761623	931.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.1	1	11.1	10.6	11.6	0								0	0	0	0.084509	1	2115	2115		76.17	1.1264	1				14799	3043	9375	9417	15031	15031					0.040199992663815465
GTNKVASQK	9	Unmodified	_GTNKVASQK_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3;ENST00000401596.1_1_6:6535542-6535761:+|nuORF	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7614440917969	2	466.761623	931.508694	-1.1604	-0.00054164	0.39515	0.00018444	-0.76528	-0.0003572	466.76208224061565	10.939	0.066991	10.939	10.895	10.962	0					6	4	2	0	0	0	0.34452	1	2091	2091		46.457	12.284	1	120100			14800	3043	9375	9417	15032	15032					0.040199992663815465
GTNKVASQK	9	Unmodified	_GTNKVASQK_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3;ENST00000401596.1_1_6:6535542-6535761:+|nuORF	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.761474609375	2	466.761623	931.508694	-1.1845	-0.00055289	0.62129	0.00028999	-0.56324	-0.0002629	466.76192855173554	11.156	0.16614	11.156	11.081	11.247	0					14	5	4	0	0	0	0.012936	1	2211	2211		134.77	14.145	1	3490900			14801	3043	9375	9417	15033	15033					0.040199992663815465
GTNPFATVK	9	Unmodified	_GTNPFATVK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.752685546875	2	467.753267	933.491981	-0.43544	-0.00020368	0.011727	5.4855E-06	-0.42371	-0.00019819	467.7531856833728	29.919	0.53243	29.919	29.577	30.109	0					32	21	3	0	0	0	0.33044	1	9454	9454		47.657	5.2612	1	171640			14802	3537	9376	9418	15034	15034					0.022574983804247495
GTNPFATVK	9	Unmodified	_GTNPFATVK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.75311279296875	2	467.753267	933.491981	-0.64896	-0.00030355	0.2105	9.8464E-05	-0.43845	-0.00020509	467.7533332049124	30.201	0.60584	30.201	29.839	30.445	0					40	15	4	0	0	0	0.095583	1	10817	10817		80.455	32.797	1	953810			14803	3537	9376	9418	15035	15035					0.022574983804247495
GTNPFATVK	9	Unmodified	_GTNPFATVK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7528076171875	2	467.753267	933.491981	-1.0542	-0.00049308	0.87314	0.00040842	-0.18101	-8.4666E-05	467.75361943725113	29.945	0.39393	29.945	29.752	30.146	0					33	15	3	0	0	0	0.50858	1	9760	9760		31.53	4.8369	1	267930			14804	3537	9376	9418	15036	15036					0.022574983804247495
GTNPFATVK	9	Unmodified	_GTNPFATVK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7529602050781	2	467.753267	933.491981	0.64279	0.00030067	-0.59534	-0.00027847	0.047455	2.2197E-05	467.75298340899445	30.224	0.74952	30.224	29.851	30.601	0					41	16	4	0	0	0	0.061298	1	11229	11229		91.265	91.265	1	1548700			14805	3537	9376	9418	15037	15037					0.022574983804247495
GTNPFATVK	9	Unmodified	_GTNPFATVK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7530517578125	2	467.753267	933.491981	0.59938	0.00028036	0.014262	6.6712E-06	0.61364	0.00028703	467.75342884316393	30.14	0.74788	30.14	29.83	30.578	0					33	15	4	0	0	0	0.032383	1	11112	11112		106.68	42.476	1	1223300			14806	3537	9376	9418	15038	15038					0.022574983804247495
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.76092529296875	2	450.761092	899.507631	0.01511	6.8112E-06	-0.53591	-0.00024157	-0.5208	-0.00023476	450.76077303655524	22.47	0.21197	22.47	22.357	22.569	0					14	6	3	0	0	0	0.035106	1	6352	6352		104.01	24.563	1	305760			14807	4068	9377	9419	15039	15039					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7607421875	2	450.761092	899.507631	-0.30871	-0.00013916	0.19448	8.7665E-05	-0.11423	-5.149E-05	450.76104723062286	22.468	0.24815	22.468	22.346	22.594	0					16	7	3	0	0	0	0.15593	1	6345	6345		66.92	17.479	1	476450			14808	4068	9377	9419	15040	15040					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7608947753906	2	450.761092	899.507631	-0.49174	-0.00022166	0.35241	0.00015885	-0.13933	-6.2803E-05	450.7610379552987	22.801	0.29332	22.801	22.676	22.969	0					18	7	3	0	0	0	0.017421	1	7445	7445		126.24	30.427	1	2689900			14809	4068	9377	9419	15041	15041					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.7608947753906	2	450.761092	899.507631	-1.1883	-0.00053564	0.89942	0.00040542	-0.28889	-0.00013022	450.7614062184727	22.494	0.30612	22.494	22.393	22.699	0					22	9	4	0	0	0	0.017741	1	6628	6628		125.71	19.03	1	1032100			14810	4068	9377	9419	15042	15042					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7608642578125	2	450.761092	899.507631	0.69209	0.00031197	-0.81715	-0.00036834	-0.12506	-5.6372E-05	450.76066785628984	22.702	0.66208	22.702	22.55	23.212	0					26	13	4	0	0	0	0.0059342	1	7709	7709		154.01	24.59	1	5286300			14811	4068	9377	9419	15043	15043					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7608337402344	2	450.761092	899.507631	-0.1607	-7.2439E-05	-0.38034	-0.00017144	-0.54105	-0.00024388	450.76090407616493	22.562	0.24308	22.562	22.422	22.665	0					13	5	3	0	0	0	0.021015	1	6731	6731		120.31	29.705	1	662550			14812	4068	9377	9419	15044	15044					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.76068115234375	2	450.761092	899.507631	-2.6073	-0.0011753	1.9592	0.00088312	-0.64809	-0.00029213	450.7618766927311	22.554	0.32705	22.554	22.454	22.781	0					15	7	3	0	0	0	0.022698	1	6724	6724		117.53	29.349	1	1067200			14813	4068	9377	9419	15045	15045					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7608642578125	2	450.761092	899.507631	0.87618	0.00039495	-1.1355	-0.00051184	-0.25932	-0.00011689	450.76056586548	22.68	0.56094	22.68	22.572	23.133	0					23	11	4	0	0	0	0.014413	1	7588	7588		131.62	30.364	1	4634100			14814	4068	9377	9419	15046	15046					0.05385784897475787
GTNPLNRQK	9	Unmodified	_GTNPLNRQK_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.M902Wfs*55|2|0.45|ENSG00000068024|chr2:239081127-239081127|G/-|frameshift_variant;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000463007.5_1_2:240011659-240219867:-|nuORF	ENST00000463007.5_1_2:240011659-240219867:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2859497070312	2	514.285797	1026.55704	-0.48301	-0.00024841	0.1654	8.5064E-05	-0.31761	-0.00016334	514.2857997092216	16.871	0.29972	16.871	16.696	16.996	0					10	6	2	0	0	0	0.28897	1	4932	4932		51.193	10.415	1	118490			14815	9754	9378	9420	15047	15047					0.044824929062770025
GTNPWTDAL	9	Unmodified	_GTNPWTDAL_					0	0	0			REV__ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant	REV__ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.732421875	2	487.732532	973.45051	0.80363	0.00039196	-0.86565	-0.00042221	-0.062019	-3.0249E-05	487.7321337162292	43.026	0.26373	43.026	42.896	43.159	0					15	7	3	0	0	0	0.48389	1	17194	17194		34.173	1.3601	1	368350	+		14816	16338	9379	9421	15048	15048					-0.03727682378917052
GTNQDIAF	8	Unmodified	_GTNQDIAF_					0	0	0			REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.2076416015625	2	433.20615	864.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.234	1	31.234	30.734	31.734	0								0	0	0	1.7419	1	10729	10729		42.396	3.1433	1		+		14817	12676	9380	9422	15049	15049					-0.03987640441721396
GTNRTTVNK	9	Unmodified	_GTNRTTVNK_					0	0	0		NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7696838378906	2	495.76998	989.525407	0.73492	0.00036435	-0.61648	-0.00030563	0.11844	5.8721E-05	495.76956573000865	12.152	0.14154	12.152	12.084	12.226	0					7	4	2	0	0	0	0.054723	1	2494	2494		93.598	11.357	1	570140			14818	7874	9381	9423	15050	15050					0.03022500152314933
GTNSLELQK	9	Unmodified	_GTNSLELQK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2666320800781	2	495.266739	988.518924	-0.40341	-0.00019979	0.45112	0.00022343	0.047713	2.3631E-05	495.26698057286734	24.169	0.49058	24.169	23.819	24.309	0					15	11	3	0	0	0	0.024312	1	8108	8108		114.86	16.229	1	1145800			14819	3724	9382	9424	15051	15051					0.0242056220096174
GTNSLELQK	9	Unmodified	_GTNSLELQK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2657470703125	2	495.266739	988.518924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.117	1	24.117	23.617	24.617	0								0	0	0	0.00038087	1	8400	8400		136.99	41.174	1				14820	3724	9382	9424	15052	15052					0.0242056220096174
GTNSVICSK	9	Unmodified	_GTNSVICSK_					0	0	0		ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.72882080078125	2	454.728935	907.443317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.655	1	19.655	19.155	20.155	0								0	0	0	0.097963	1	5126	5126		72.243	6.7779	1				14821	2183	9383	9425	15053	15053					-0.014107382509678246
GTNSVICSK	9	Unmodified	_GTNSVICSK_					0	0	0		ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.7288513183594	2	454.728935	907.443317	0.71963	0.00032724	-1.1433	-0.00051991	-0.4237	-0.00019267	454.72852769885674	19.98	0.25644	19.98	19.869	20.125	0					10	5	3	0	0	0	0.017741	1	6134	6134		125.71	37.536	1	527960			14822	2183	9383	9425	15054	15054					-0.014107382509678246
GTNSVICSK	9	Unmodified	_GTNSVICSK_					0	0	0		ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.7285461425781	2	454.728935	907.443317	-0.13158	-5.9832E-05	-0.58846	-0.00026759	-0.72003	-0.00032742	454.728631021215	19.885	0.32122	19.885	19.775	20.096	0					10	6	2	0	0	0	0.067603	1	6374	6374		89.029	25.495	1	428170			14823	2183	9383	9425	15055	15055					-0.014107382509678246
GTNSVICSK	9	Unmodified	_GTNSVICSK_					0	0	0		ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.7286071777344	2	454.728935	907.443317	-0.42274	-0.00019223	-0.3063	-0.00013928	-0.72904	-0.00033152	454.72879584536173	19.902	0.26914	19.902	19.791	20.06	0					12	5	3	0	0	0	0.061298	1	6243	6243		91.265	10.811	1	468320			14824	2183	9383	9425	15056	15056					-0.014107382509678246
GTNSVICSK	9	Unmodified	_GTNSVICSK_					0	0	0		ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.7285461425781	2	454.728935	907.443317	0.87794	0.00039922	-1.9286	-0.00087699	-1.0507	-0.00047776	454.72816886868515	19.885	0.26988	19.885	19.774	20.044	0					11	5	3	0	0	0	0.067603	1	6237	6237		89.029	20.183	1	539370			14825	2183	9383	9425	15057	15057					-0.014107382509678246
GTNVMVTVAK	10	Unmodified	_GTNVMVTVAK_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF;ENST00000464173.5_1_20:30136866-30137929:+|nuORF;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.28192138671875	2	510.281334	1018.54812	1.0527	0.00053719	0.5535	0.00028244	1.6062	0.00081963	510.2812790253813	27.311	0.10938	27.311	27.249	27.358	0					8	4	2	0	0	0	0.46192	1	8395	8395		49.466	15.293	1	42729			14826	2106	9384	9426	15058	15058					0.03958383225585749
GTNVMVTVAK	10	Unmodified	_GTNVMVTVAK_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF;ENST00000464173.5_1_20:30136866-30137929:+|nuORF;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2820739746094	2	510.281334	1018.54812	0.27633	0.000141	-0.17977	-9.1732E-05	0.096559	4.9272E-05	510.2814888371628	27.336	0.17183	27.336	27.294	27.466	0					7	4	2	0	0	0	0.51765	1	8980	8980		43.419	6.2594	1	79006			14827	2106	9384	9426	15059	15059					0.03958383225585749
GTNVNMPVSK	10	Unmodified	_GTNVNMPVSK_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7698364257812	2	523.768591	1045.52263	0.51201	0.00026817	1.3169	0.00068974	1.8289	0.00095791	523.7693776326267	23.653	0.15067	23.653	23.593	23.743	0					10	5	2	0	0	0	0.53919	1	7127	7127		41.08	9.1252	1	63362			14828	4903	9385	9427	15060	15060					0.0016890870317638473
GTPAGGGFPR	10	Unmodified	_GTPAGGGFPR_					0	0	0		ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant;ZFP36L1|p.S294Afs*13|1|0.33|ENSG00000185650|chr14:68789671-68789671|G/-|frameshift_variant;ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant;ZFP36L1|p.G271Vfs*36|1|0.32|ENSG00000185650|chr14:68789738-68789738|C/-|frameshift_variant;ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7352294921875	2	458.735409	915.456264	-0.96362	-0.00044205	-0.50936	-0.00023366	-1.473	-0.00067571	458.7356039530476	24.122	0.39122	24.122	23.991	24.382	0					23	12	2	0	0	0	0.49411	1	7336	7336		45.972	11.8	1	132000			14829	7093	9386	9428	15061	15061					-0.004845390765808588
GTPAGGGFPR	10	Unmodified	_GTPAGGGFPR_					0	0	0		ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant;ZFP36L1|p.S294Afs*13|1|0.33|ENSG00000185650|chr14:68789671-68789671|G/-|frameshift_variant;ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant;ZFP36L1|p.G271Vfs*36|1|0.32|ENSG00000185650|chr14:68789738-68789738|C/-|frameshift_variant;ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.735595703125	2	458.735409	915.456264	0.094544	4.3371E-05	-0.61603	-0.00028259	-0.52148	-0.00023922	458.73505660026973	24.141	0.44498	24.141	23.994	24.439	0					17	10	2	0	0	0	0.49411	1	7491	7491		45.972	7.1661	1	85210			14830	7093	9386	9428	15062	15062					-0.004845390765808588
GTPERRKGSLA	11	Unmodified	_GTPERRKGSLA_					0	0	0		nc|ENSG00000134532|P35711-4|SOX5;SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;SOX6|p.P293Lfs*3|1|0.36|ENSG00000110693|chr11:16111823-16111823|G/-|frameshift_variant;SOX6|p.G294Wfs*8|1|0.36|ENSG00000110693|chr11:16111822-16111823|-/G|frameshift_variant;SOX6|p.F490Lfs*7|1|0.35|ENSG00000110693|chr11:16046667-16046667|A/-|frameshift_variant;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6;ENST00000533658.5_1_11:16339950-16362794:-|nuORF	nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-4|SOX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.2249755859375	3	391.222916	1170.64692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.191	1	46.191	45.691	46.691	0								0	0	0	0.41817	1	18488	18488		33.039	9.6615	1				14831	3925	9387	9429	15063	15063					0.06842122514854054
GTPESVQSAK	10	Unmodified	_GTPESVQSAK_					0	0	0		FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2568054199219	2	502.256371	1002.49819	-0.044169	-2.2184E-05	0.14069	7.0664E-05	0.096524	4.848E-05	502.2566147595646	16.887	0.12512	16.887	16.834	16.959	0					12	5	3	0	0	0	0.68892	1	3930	3930		23.378	4.1152	1	179010			14832	5477	9388	9430	15064	15064					-0.0029602817870681974
GTPESVQSAK	10	Unmodified	_GTPESVQSAK_					0	0	0		FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2562561035156	2	502.256371	1002.49819	-0.073252	-3.6791E-05	-0.11635	-5.8436E-05	-0.1896	-9.5227E-05	502.25632589541425	17.181	0.21395	17.181	17.088	17.302	0					12	5	3	0	0	0	0.31784	1	4806	4806		65.278	1.9713	1	1321900			14833	5477	9388	9430	15065	15065					-0.0029602817870681974
GTPESVQSAK	10	Unmodified	_GTPESVQSAK_					0	0	0		FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2567138671875	2	502.256371	1002.49819	-0.92821	-0.0004662	2.0497	0.0010295	1.1215	0.00056329	502.25750623841043	16.942	0.076675	16.942	16.896	16.972	0					5	3	2	0	0	0	0.70967	1	4157	4157		20.837	2.5751	1	51484			14834	5477	9388	9430	15066	15066					-0.0029602817870681974
GTPESVQSAK	10	Unmodified	_GTPESVQSAK_					0	0	0		FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	FUBP1|p.I301Yfs*22|2|0.26|ENSG00000162613|chr1:77964293-77964293|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2562561035156	2	502.256371	1002.49819	-0.54065	-0.00027155	0.39394	0.00019786	-0.14672	-7.369E-05	502.2565480235182	17.14	0.16968	17.14	17.03	17.2	0					5	3	2	0	0	0	0.44292	1	5048	5048		51.528	10.101	1	599110			14835	5477	9388	9430	15067	15067					-0.0029602817870681974
GTPGTQAFYRV	11	Unmodified	_GTPGTQAFYRV_					0	0	0		nc|nan|Q8N9H9-2|C1orf127;nc|nan|Q8N9H9|C1orf127;ENSG00000175262|ENST00000377004|C1orf127	nc|nan|Q8N9H9-2|C1orf127	nc|nan|Q8N9H9-2|C1orf127	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.53997802734375	3	399.540134	1195.59857	0.9307	0.00037185	-1.3725	-0.00054837	-0.4418	-0.00017652	399.53960947415817	20.705	0.20603	20.705	20.61	20.816	0					12	4	4	0	0	0	0.65907	1	6479	6479		27.644	27.644	1	872630			14836	6543	9389	9431	15068	15068					0.008596288749231462
GTPIGPKGVVK	11	Unmodified	_GTPIGPKGVVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.55352783203125	3	351.553603	1051.63898	-0.70266	-0.00024702	0.038058	1.3379E-05	-0.6646	-0.00023364	351.55370299596797	13.369	0.1982	13.369	13.24	13.438	0					16	11	2	0	0	0	0.78498	1	2760	2760		21.78	0.094677	1	103710	+		14837	15602;22247	9390	9432	15069	15069					0.11522595265364544
GTPLETIQKK	10	Unmodified	_GTPLETIQKK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8269653320312	2	557.826963	1113.63937	-0.48369	-0.00026982	0.77185	0.00043056	0.28816	0.00016074	557.827483435488	23.88	0.49528	23.88	23.558	24.053	0					38	17	3	0	0	0	0.43708	1	7270	7270		56.434	0	1	276120			14838	3093	9391	9433	15070	15070					0.08709970194558991
GTPLLVIANK	10	Unmodified	_GTPLLVIANK_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.3209228515625	2	513.321317	1024.62808	0.01331	6.8324E-06	0.058512	3.0035E-05	0.071822	3.6868E-05	513.3213412507204	37.635	0.32061	37.635	37.415	37.736	0					19	9	3	0	0	0	0.36476	1	14274	14274		60.118	22.307	1	160890			14839	7232	9392	9434	15071	15071					0.11675192891084407
GTPPQKLPLG	10	Unmodified	_GTPPQKLPLG_					0	0	0		nc|ENSG00000162105|Q9UPX8-2|SHANK2	nc|ENSG00000162105|Q9UPX8-2|SHANK2	nc|ENSG00000162105|Q9UPX8-2|SHANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342102050781	3	336.53432	1006.58113	0.24099	8.11E-05	-0.64024	-0.00021546	-0.39925	-0.00013436	336.53410241893977	20.555	0.56532	20.555	20.231	20.797	0					41	17	3	0	0	0	0.73274	1	5403	5403		21.686	8.2317	1	272550			14840	11611	9393	9435	15072	15072					0.07810333339944009
GTPPQKLPLG	10	Unmodified	_GTPPQKLPLG_					0	0	0		nc|ENSG00000162105|Q9UPX8-2|SHANK2	nc|ENSG00000162105|Q9UPX8-2|SHANK2	nc|ENSG00000162105|Q9UPX8-2|SHANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.53411865234375	3	336.53432	1006.58113	0.51637	0.00017377	-1.1385	-0.00038316	-0.62218	-0.00020938	336.5344128448669	18.861	4.3428	18.861	18.75	23.093	0					349	101	5	0	0	0	0.60076	2	7353	6433;7353		38.754	6.0602	1	882170000			14841	11611	9393	9435	15073;15074	15074					0.07810333339944009
GTPRAAPKK	9	Unmodified	_GTPRAAPKK_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1;PNRC1|p.K251Sfs*14|2|0.25|ENSG00000146278|chr6:89083958-89083958|A/-|frameshift_variant;ENSG00000146278|ENST00000336032|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2820739746094	2	463.282526	924.550499	0.70548	0.00032684	-1.3862	-0.00064222	-0.68076	-0.00031539	463.28176703196954	12.059	0.19644	12.059	11.954	12.151	0					9	5	3	0	0	0	0.30951	1	2632	2632		49.442	1.5259	1	199710			14842	4723	9394	9436	15075	15075					0.08520599745554591
GTPRNGPL	8	Unmodified	_GTPRNGPL_					0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.2247009277344	2	406.224677	810.434801	0.40795	0.00016572	-0.44793	-0.00018196	-0.039985	-1.6243E-05	406.22436249728315	20.442	0.26536	20.442	20.297	20.562	0					9	5	2	0	0	0	0.60719	1	6645	6645		47.916	3.7988	1	102590	+		14843	13431	9395	9437	15076	15076					0.022000758947001486
GTPRTLNTVF	10	Unmodified	_GTPRTLNTVF_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.3037719726562	2	553.303655	1104.59276	1.4197	0.00078553	0.014207	7.861E-06	1.4339	0.0007934	553.3035526616184	25.127	0.20958	25.127	24.987	25.197	0					11	6	3	0	0	0	0.45669	1	7526	7526		54.776	5.3348	1	65458			14844	7402	9396	9438	15077	15077					0.044645303632933064
GTPVASHFGEQ	11	Unmodified	_GTPVASHFGEQ_					0	0	0			REV__nc|ENSG00000156711|O15264-2|MAPK13	REV__nc|ENSG00000156711|O15264-2|MAPK13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.1806640625	3	377.180605	1128.51999	0.80755	0.00030459	-0.98571	-0.00037179	-0.17816	-6.7197E-05	377.18031268016955	26.931	0.37412	26.931	26.847	27.221	0					16	9	3	0	0	0	0.60656	1	9363	9363		38.714	5.9017	1	332600	+		14845	21076	9397	9439	15078	15078					-0.03913223430140533
GTQAAYSHHTL	11	Unmodified	_GTQAAYSHHTL_					0	0	0			REV__ENST00000488564.2_1_7:27881117-27881465:+|nuORF	REV__ENST00000488564.2_1_7:27881117-27881465:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.2869262695312	2	593.285994	1184.55744	3.1747	0.0018835	-1.3633	-0.00080884	1.8113	0.0010746	593.2850972268525	35.714	0.36293	35.714	35.552	35.914	0					20	7	4	0	0	0	0.35529	1	13824	13824		56.434	16.376	1	621810	+		14846	19693	9398	9440	15079	15079					-0.027461321645205317
GTQAIAHIHNK	11	Unmodified	_GTQAIAHIHNK_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.3255004882812	2	595.325454	1188.63635	0.19509	0.00011614	-0.2947	-0.00017545	-0.099616	-5.9304E-05	595.325353366308	16.854	0.13195	16.854	16.768	16.9	0					5	3	2	0	0	0	0.14512	1	4660	4660		80.916	11.289	1	340750			14847	3404	9399	9441	15080	15080					0.04958139860423216
GTQAIAHIHNK	11	Unmodified	_GTQAIAHIHNK_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.325439453125	2	595.325454	1188.63635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.821	1	16.821	16.321	17.321	0								0	0	0	0.047939	1	4885	4885		109.44	35.274	1				14848	3404	9399	9441	15081	15081					0.04958139860423216
GTQAPPRRPG	10	Unmodified	_GTQAPPRRPG_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.1925048828125	3	346.193068	1035.55738	1.4632	0.00050656	-2.8813	-0.00099748	-1.418	-0.00049092	346.1920299793903	13.117	0.28441	13.117	13.012	13.297	0					15	6	4	0	0	0	0.65895	1	3145	3145		27.047	1.4733	1	462400			14849	10758	9400	9442	15082	15082					0.041019126261289784
GTQFGGNI	8	Unmodified	_GTQFGGNI_					0	0	0		ENST00000293880.9_1_11:57100225-57103093:-|nuORF	ENST00000293880.9_1_11:57100225-57103093:-|nuORF	ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.1957092285156	2	397.195585	792.376617	0.91469	0.00036331	-0.074239	-2.9487E-05	0.84045	0.00033382	397.1955155468539	16.914	0.17117	16.914	16.82	16.991	0					7	4	2	0	0	0	0.68754	1	4686	4686		35.201	1.6851	1	255160			14850	8443	9401	9443	15083	15083					-0.027876057505750396
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.7429504394531	2	444.742899	887.471246	0.20131	8.9529E-05	-0.46481	-0.00020672	-0.2635	-0.00011719	444.74264875812395	17.112	0.23592	17.112	17.012	17.248	0					15	7	3	0	0	0	0.017741	1	4011	4011		125.71	8.8093	1	493380			14851	2616	9402	9444	15084	15084					0.023009080007568627
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7425537109375	2	444.742899	887.471246	0.59236	0.00026345	-1.0329	-0.00045939	-0.44056	-0.00019594	444.7424516505723	17.424	0.44487	17.424	17.224	17.668	0					23	11	4	0	0	0	5.4275E-05	1	4910	4910		195.05	51.939	1	2636000			14852	2616	9402	9444	15085	15085					0.023009080007568627
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.742919921875	2	444.742899	887.471246	-1.1609	-0.00051631	0.77304	0.00034381	-0.38788	-0.00017251	444.74323153125823	17.149	0.20028	17.149	17.053	17.254	0					14	6	3	0	0	0	0.082776	1	4230	4230		83.647	6.8729	1	321150			14853	2616	9402	9444	15086	15086					0.023009080007568627
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.74285888671875	2	444.742899	887.471246	-0.20153	-8.9631E-05	-0.23612	-0.00010501	-0.43765	-0.00019464	444.74279020765334	17.375	0.24951	17.375	17.217	17.466	0					15	5	4	0	0	0	0.0030642	1	5136	5136		168.26	38.576	1	1488600			14854	2616	9402	9444	15087	15087					0.023009080007568627
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.7429504394531	2	444.742899	887.471246	0.44807	0.00019928	-0.4963	-0.00022073	-0.048229	-2.145E-05	444.74276349612177	17.179	0.21461	17.179	17.043	17.257	0					12	6	3	0	0	0	0.15558	1	4206	4206		66.962	4.8545	1	223410			14855	2616	9402	9444	15088	15088					0.023009080007568627
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.74261474609375	2	444.742899	887.471246	-0.47475	-0.00021114	0.010562	4.6975E-06	-0.46419	-0.00020645	444.7428801319469	17.192	0.21073	17.192	17.071	17.281	0					15	6	3	0	0	0	0.040209	1	4217	4217		99.013	19.3	1	447660			14856	2616	9402	9444	15089	15089					0.023009080007568627
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.74237060546875	2	444.742899	887.471246	-0.47037	-0.00020919	-0.06596	-2.9335E-05	-0.53633	-0.00023853	444.74284274422615	17.35	0.40517	17.35	17.192	17.598	0					19	8	4	0	0	0	0.0088974	1	4976	4976		143.37	13.691	1	2778900			14857	2616	9402	9444	15090	15090					0.023009080007568627
GTQGSPITK	9	Unmodified	_GTQGSPITK_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536481.1_1_11:73075528-73075729:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.74298095703125	2	444.742899	887.471246	0.79109	0.00035183	-1.2387	-0.00055091	-0.44762	-0.00019907	444.74234224010155	17.371	0.45647	17.371	17.175	17.632	0					15	9	3	0	0	0	0.0088974	1	4969	4969		143.37	26.47	1	3026900			14858	2616	9402	9444	15091	15091					0.023009080007568627
GTQIHKVCK	9	Carbamidomethyl (C)	_GTQIHKVC(Carbamidomethyl (C))K_	GTQIHKVC(1)K		GTQIHKVC(99)K		0	1	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.7930297851562	2	535.792401	1069.57025	0.634	0.00033969	-0.055339	-2.965E-05	0.57867	0.00031004	535.7926597119117	13.875	0.11801	13.875	13.826	13.944	0					11	5	3	0	0	0	0.0406	1	2777	2777		98.629	13.714	1	307030			14859	10989	9403	9445	15092	15092	442				0.03824607694014048
GTQIHKVCK	9	Carbamidomethyl (C)	_GTQIHKVC(Carbamidomethyl (C))K_	GTQIHKVC(1)K		GTQIHKVC(160)K		0	1	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7928466796875	2	535.792401	1069.57025	0.18758	0.0001005	0.25316	0.00013564	0.44074	0.00023614	535.7927135353862	14.22	0.24638	14.22	14.132	14.378	0					15	6	5	0	0	0	0.0051608	1	3404	3404		157.33	40.425	1	2248400			14860	10989	9403	9445	15093	15093	442				0.03824607694014048
GTQIHKVCK	9	Carbamidomethyl (C)	_GTQIHKVC(Carbamidomethyl (C))K_	GTQIHKVC(1)K		GTQIHKVC(110)K		0	1	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7927856445312	2	535.792401	1069.57025	0.2917	0.00015629	0.11636	6.2347E-05	0.40807	0.00021864	535.792635257287	14.115	0.15907	14.115	14.058	14.217	0					7	3	3	0	0	0	0.026538	1	3596	3596		112.41	30.17	1	1390700			14861	10989	9403	9445	15094	15094	442				0.03824607694014048
GTQIHKVCK	9	Carbamidomethyl (C)	_GTQIHKVC(Carbamidomethyl (C))K_	GTQIHKVC(1)K		GTQIHKVC(99)K		0	1	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7926635742188	2	535.792401	1069.57025	-1.3742	-0.00073628	3.2553	0.0017442	1.8811	0.0010079	535.7940673300869	13.95	0.057564	13.95	13.929	13.986	0					4	2	2	0	0	0	0.0406	1	2875	2875		98.629	13.469	1	125860			14862	10989	9403	9445	15095	15095	442				0.03824607694014048
GTQIHKVCK	9	Unmodified	_GTQIHKVCK_					0	0	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2814025878906	2	507.281669	1012.54878	-0.089068	-4.5183E-05	-0.6565	-0.00033303	-0.74557	-0.00037821	507.2815086279918	14.526	0.17482	14.526	14.452	14.627	0					13	7	3	0	0	0	0.0067848	1	2995	2995		150.36	40.242	1	417550			14863	10989	9403	9446	15096	15096					0.04301222665299065
GTQIHKVCK	9	Unmodified	_GTQIHKVCK_					0	0	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.281494140625	2	507.281669	1012.54878	-0.032996	-1.6738E-05	-0.49171	-0.00024944	-0.52471	-0.00026618	507.2815885939097	14.815	0.51858	14.815	14.682	15.201	0					23	12	4	0	0	0	0.0097668	1	3700	3700		141.52	31.401	1	3558200			14864	10989	9403	9446	15097	15097					0.04301222665299065
GTQIHKVCK	9	Unmodified	_GTQIHKVCK_					0	0	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.5234069824219	3	338.523538	1012.54878	0.51351	0.00017383	-0.81598	-0.00027623	-0.30247	-0.00010239	338.52325771245904	14.815	0.39626	14.815	14.721	15.117	0					14	9	2	0	0	0	0.22377	1	3702	3702		75.043	20.267	1	2840900			14865	10989	9403	9446	15098	15098					0.04301222665299065
GTQIHKVCK	9	Unmodified	_GTQIHKVCK_					0	0	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2817077636719	2	507.281669	1012.54878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.798	1	14.798	14.298	15.298	0								0	0	0	0.14881	1	3916	3916		60.118	7.1816	1				14866	10989	9403	9446	15099	15099					0.04301222665299065
GTQIHKVCK	9	Unmodified	_GTQIHKVCK_					0	0	0		ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	ENST00000594085.5_1_19:40854624-40871501:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2835388183594	2	507.281669	1012.54878	-1.9229	-0.00097544	2.4571	0.0012464	0.5342	0.00027099	507.2828893006948	14.567	0.13448	14.567	14.521	14.656	0					9	5	3	0	0	0	0.12834	1	3104	3104		72.879	10.772	1	241320			14867	10989	9403	9446	15100	15100					0.04301222665299065
GTQKQQGLMK	10	Unmodified	_GTQKQQGLMK_					0	0	0		ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant;ERN2|p.Q822Rfs*35|1|0.26|ENSG00000134398|chr16:23692019-23692019|G/-|frameshift_variant;ENSG00000134398|ENST00000256797|ERN2	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.3056030273438	2	559.802965	1117.59138	0.12389	6.9357E-05	2.4864	0.0013919	2.6103	0.0014613	559.8042733616566	16.017	0.10295	16.017	15.953	16.056	0					5	3	2	0	0	0	0.30252	1	3753	3753		66.962	26.904	1	138590			14868	3918	9404	9447	15101	15101					0.03728573002877056
GTQKQQGLMK	10	Unmodified	_GTQKQQGLMK_					0	0	0		ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant;ERN2|p.Q822Rfs*35|1|0.26|ENSG00000134398|chr16:23692019-23692019|G/-|frameshift_variant;ENSG00000134398|ENST00000256797|ERN2	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.8034057617188	2	559.802965	1117.59138	1.7826	0.0009979	-0.94485	-0.00052893	0.83773	0.00046897	559.8024700368342	16.272	0.16829	16.272	16.162	16.331	0					6	3	2	0	0	0	0.11308	1	4628	4628		93.143	32.171	1	1550600			14869	3918	9404	9447	15102	15102					0.03728573002877056
GTQKQQGLMK	10	Unmodified	_GTQKQQGLMK_					0	0	0		ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant;ERN2|p.Q822Rfs*35|1|0.26|ENSG00000134398|chr16:23692019-23692019|G/-|frameshift_variant;ENSG00000134398|ENST00000256797|ERN2	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8033447265625	2	559.802965	1117.59138	1.8255	0.0010219	-1.3698	-0.00076681	0.45574	0.00025512	559.8023039811005	16.242	0.11717	16.242	16.183	16.3	0					6	2	3	0	0	0	0.03454	1	4467	4467		114.89	29.979	1	1231100			14870	3918	9404	9447	15103	15103					0.03728573002877056
GTQLCTWPAR	10	Unmodified	_GTQLCTWPAR_					0	0	0		ENST00000520793.5_1_6:90305719-90326311:+|nuORF;ENST00000369408.9_1_6:90305719-90326311:+|nuORF	ENST00000520793.5_1_6:90305719-90326311:+|nuORF	ENST00000520793.5_1_6:90305719-90326311:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.1914978027344	3	378.190447	1131.54951	3.2511	0.0012295	-0.80904	-0.00030597	2.4421	0.00092356	378.19032180172513	13.507	0.10332	13.507	13.453	13.557	0					6	2	3	0	0	0	0.48965	1	3158	3158		46.457	13.706	1	1048600			14871	8941	9405	9448	15104	15104					-0.010999826856505024
GTQPGPLLK	9	Unmodified	_GTQPGPLLK_					0	0	0		ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;ITIH5|p.L690*|1|0.49|ENSG00000123243|chr10:7569749-7569749|G/-|frameshift_variant;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.7715148925781	2	455.77146	909.528367	-1.0962	-0.00049961	0.76271	0.00034762	-0.33348	-0.00015199	455.77184185557326	25.615	0.32149	25.615	25.45	25.771	0					22	10	3	0	0	0	0.47038	1	7947	7947		35.618	1.4457	1	224090			14872	3310	9406	9449	15105	15105					0.06998375277134983
GTQPGPLLK	9	Unmodified	_GTQPGPLLK_					0	0	0		ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;ITIH5|p.L690*|1|0.49|ENSG00000123243|chr10:7569749-7569749|G/-|frameshift_variant;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.77117919921875	2	455.77146	909.528367	0.72152	0.00032885	-1.1421	-0.00052054	-0.42059	-0.00019169	455.7709417870592	25.877	0.49777	25.877	25.636	26.134	0					20	8	4	0	0	0	0.032052	1	9206	9206		107.01	30.233	1	1419900			14873	3310	9406	9449	15106	15106					0.06998375277134983
GTQPGPLLK	9	Unmodified	_GTQPGPLLK_					0	0	0		ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;ITIH5|p.L690*|1|0.49|ENSG00000123243|chr10:7569749-7569749|G/-|frameshift_variant;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.771240234375	2	455.77146	909.528367	0.15687	7.1497E-05	-0.19658	-8.9596E-05	-0.03971	-1.8099E-05	455.7712659583344	25.69	0.24991	25.69	25.539	25.789	0					14	6	3	0	0	0	0.24095	1	8164	8164		56.721	7.2795	1	222530			14874	3310	9406	9449	15107	15107					0.06998375277134983
GTQPGPLLKK	10	Unmodified	_GTQPGPLLKK_					0	0	0		ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;ITIH5|p.L690*|1|0.49|ENSG00000123243|chr10:7569749-7569749|G/-|frameshift_variant;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.8191528320312	2	519.818941	1037.62333	0.61524	0.00031981	-0.076095	-3.9555E-05	0.53915	0.00028026	519.81883339342	20.213	0.18428	20.213	20.126	20.31	0					15	6	3	0	0	0	0.63019	1	5360	5360		32.812	11.865	1	108100			14875	3310	9407	9450	15108	15108					0.10602308748320866
GTQPGPLLKK	10	Unmodified	_GTQPGPLLKK_					0	0	0		ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;ITIH5|p.L690*|1|0.49|ENSG00000123243|chr10:7569749-7569749|G/-|frameshift_variant;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.8192138671875	2	519.818941	1037.62333	0.0652	3.3892E-05	0.56339	0.00029286	0.62859	0.00032675	519.8190954654319	20.613	0.33501	20.613	20.464	20.799	0					21	7	4	0	0	0	0.099683	1	6407	6407		104.01	18.853	1	1226200			14876	3310	9407	9450	15109	15109					0.10602308748320866
GTQPGPLLKK	10	Unmodified	_GTQPGPLLKK_					0	0	0		ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;ITIH5|p.L690*|1|0.49|ENSG00000123243|chr10:7569749-7569749|G/-|frameshift_variant;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	ENST00000492668.5_1_10:7611547-7618533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.8190307617188	2	519.818941	1037.62333	-0.26568	-0.00013811	0.65441	0.00034018	0.38873	0.00020207	519.8192413546343	20.504	0.36465	20.504	20.348	20.713	0					21	7	4	0	0	0	0.048505	1	6640	6640		120.87	73.211	1	1774900			14877	3310	9407	9450	15110	15110					0.10602308748320866
GTQSDKVTLK	10	Unmodified	_GTQSDKVTLK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000483086.1_1_2:242174984-242179130:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.8016357421875	2	538.800946	1075.58734	1.5099	0.00081352	0.024582	1.3245E-05	1.5345	0.00082677	538.8008778003086	17.844	0.17022	17.844	17.801	17.971	0					5	4	2	0	0	0	0.1725	1	4347	4347		82.831	13.203	1	111180			14878	2930	9408	9451	15111	15111					0.05256806780789702
GTQSDKVTLK	10	Unmodified	_GTQSDKVTLK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000483086.1_1_2:242174984-242179130:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.80126953125	2	538.800946	1075.58734	2.0186	0.0010876	-2.1831	-0.0011762	-0.1645	-8.8633E-05	538.7996442312304	18.174	0.13858	18.174	18.082	18.221	0					9	3	3	0	0	0	0.0088982	1	5277	5277		147.73	13.98	1	1167900			14879	2930	9408	9451	15112	15112					0.05256806780789702
GTQSDKVTLK	10	Unmodified	_GTQSDKVTLK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000483086.1_1_2:242174984-242179130:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.8015747070312	2	538.800946	1075.58734	1.0059	0.00054197	0.45808	0.00024682	1.464	0.00078878	538.8013203608338	17.916	0.10608	17.916	17.863	17.969	0					4	2	2	0	0	0	0.30252	1	4580	4580		66.962	7.0311	1	169270			14880	2930	9408	9451	15113	15113					0.05256806780789702
GTQSFVFQR	9	Unmodified	_GTQSFVFQR_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2754516601562	2	535.274898	1068.53524	0.59516	0.00031858	0.14435	7.7264E-05	0.73951	0.00039584	535.2749296746539	33.249	0.41673	33.249	33.146	33.562	0					33	15	3	0	0	0	0.012936	1	10777	10777		134.77	57.448	1	670790			14881	4807	9409	9452	15114	15114					0.0037168815772474773
GTQSFVFQR	9	Unmodified	_GTQSFVFQR_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2752075195312	2	535.274898	1068.53524	0.1768	9.4635E-05	0.39015	0.00020884	0.56695	0.00030347	535.2750127866303	33.495	0.32958	33.495	33.368	33.698	0					22	8	3	0	0	0	1.204E-12	1	12376	12376		223.88	96.416	1	5227400			14882	4807	9409	9452	15115	15115					0.0037168815772474773
GTQSFVFQR	9	Unmodified	_GTQSFVFQR_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2762451171875	2	535.274898	1068.53524	0.13798	7.3858E-05	0.34647	0.00018546	0.48445	0.00025931	535.275267956654	33.309	0.21014	33.309	33.224	33.434	0					22	8	3	0	0	0	0.012936	1	11152	11152		134.77	62.888	1	348870			14883	4807	9409	9452	15116	15116					0.0037168815772474773
GTQSFVFQR	9	Unmodified	_GTQSFVFQR_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.275146484375	2	535.274898	1068.53524	0.29122	0.00015588	0.46885	0.00025096	0.76007	0.00040685	535.2750968550619	33.517	0.34049	33.517	33.373	33.713	0					20	8	3	0	0	0	5.5435E-08	1	12822	12822		209.19	93.701	1	1551100			14884	4807	9409	9452	15117	15117					0.0037168815772474773
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.75836181640625	2	482.758549	963.502546	0.044613	2.1537E-05	-0.3954	-0.00019088	-0.35079	-0.00016935	482.75828162806545	24.789	0.38646	24.789	24.579	24.965	0					37	11	4	0	0	0	0.13109	1	7330	7330		72.243	24.586	1	732750			14885	5172	9410	9453	15118	15118					0.019334810348595965
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.75848388671875	2	482.758549	963.502546	0.066596	3.215E-05	-0.66159	-0.00031939	-0.595	-0.00028724	482.7580967666194	24.801	0.31494	24.801	24.605	24.92	0					13	9	2	0	0	0	0.25761	1	7325	7325		54.722	5.2808	1	123760			14886	5172	9410	9453	15119	15119					0.019334810348595965
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7583923339844	2	482.758549	963.502546	0.58114	0.00028055	-0.62294	-0.00030073	-0.0418	-2.0179E-05	482.7582834224197	25.067	0.9418	25.067	24.615	25.556	0					56	22	6	0	0	0	0.029571	1	8472	8472		109.44	21.742	1	5200100			14887	5172	9410	9453	15120	15120					0.019334810348595965
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.75836181640625	2	482.758549	963.502546	-1.2953	-0.00062534	0.82085	0.00039627	-0.47449	-0.00022907	482.7588924442213	24.841	0.60069	24.841	24.468	25.069	0					53	20	4	0	0	0	0.099758	2	7601	7579;7601		79.489	18.517	1	1956200			14888	5172	9410	9453	15121;15122	15122					0.019334810348595965
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7585144042969	2	482.758549	963.502546	-0.27702	-0.00013373	-0.28602	-0.00013808	-0.56304	-0.00027181	482.7584128952689	24.873	0.49955	24.873	24.643	25.142	0					34	11	4	0	0	0	0.15558	1	7768	7768		66.962	2.7547	1	1066000			14889	5172	9410	9453	15123	15123					0.019334810348595965
GTRELLAKI	9	Unmodified	_GTRELLAKI_					0	0	0			REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.20953369140625	3	334.209836	999.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.94	1	14.94	14.44	15.44	0								0	0	0	0.38404	1	3158	3158		11.636	0	1		+		14890	14450	9411	9454	15124	15124					0.10786022231286552
GTRESGPGL	9	Unmodified	_GTRESGPGL_					0	0	0			REV__ENST00000303795.8_2_2:68694701-68694746:+|nuORF	REV__ENST00000303795.8_2_2:68694701-68694746:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.22442626953125	2	437.224874	872.435195	-0.40726	-0.00017807	0.1249	5.461E-05	-0.28236	-0.00012346	437.2250221093682	14.385	0.29113	14.385	14.234	14.525	0					14	6	3	0	0	0	0.24095	1	3708	3708		56.721	10.769	1	371810	+		14891	18224	9412	9455	15125	15125					-0.006125491760826662
GTRKWRKPAS	10	Unmodified	_GTRKWRKPAS_					0	0	0			REV__ENST00000248600.5_1_7:75677146-75677221:-|nuORF	REV__ENST00000248600.5_1_7:75677146-75677221:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	396.2309875488281	3	396.231634	1185.67307	-2.229	-0.0008832	0.72488	0.00028722	-1.5041	-0.00059598	396.23187370748605	16.241	0.23327	16.241	16.144	16.377	0					13	6	3	0	0	0	0.536	1	3806	3806		41.427	6.2746	1	187150	+		14892	17957	9413	9456	15126	15126					0.08766436477003481
GTRMPSMIR	9	Unmodified	_GTRMPSMIR_					0	0	0			REV__KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant	REV__KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.1856689453125	3	350.184528	1047.53175	3.0365	0.0010633	-0.15775	-5.5243E-05	2.8787	0.0010081	350.1845396367314	18.345	0.4139	18.345	18.239	18.653	0					23	8	5	0	0	0	0.37197	1	5466	5466		42.864	42.864	1	10136000	+		14893	14212	9414	9457	15127	15127					0.009889787878364587
GTRRMARK	8	Oxidation (M)	_GTRRM(Oxidation (M))ARK_		GTRRM(1)ARK		GTRRM(71)ARK	0	0	1		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	331.1902770996094	3	331.190782	990.550516	0.27141	8.9887E-05	-0.96827	-0.00032068	-0.69687	-0.0002308	331.19038944422346	14.279	0.10683	14.279	14.224	14.331	0					11	4	3	0	0	0	0.3961	1	2913	2913		71.296	7.7619	1	687850			14894	1524	9415	9458	15128	15128		71			0.054862764739255
GTRWVKAGKT	10	Unmodified	_GTRWVKAGKT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.5498962402344	3	368.548852	1102.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.334	1	13.334	12.834	13.834	0								0	0	0	0.4146	1	3013	3013		26.063	3.0209	1				14895	5134;11594	9416	9459	15129	15129					0.07751942837080605
GTSDGRILK	9	Unmodified	_GTSDGRILK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.76934814453125	2	473.769448	945.524344	-0.018597	-8.8106E-06	-0.48449	-0.00022954	-0.50309	-0.00023835	473.7693290492904	18.073	0.08107	18.073	17.999	18.08	0					4	2	2	0	0	0	0.15163	1	4438	4438		67.494	9.2637	1	80919			14896	7380	9417	9460	15130	15130					0.04940285783413856
GTSDGRILK	9	Unmodified	_GTSDGRILK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.76904296875	2	473.769448	945.524344	0.2672	0.00012659	-0.11555	-5.4742E-05	0.15166	7.185E-05	473.76918090565516	18.392	0.15118	18.392	18.294	18.445	0					7	3	3	0	0	0	0.11898	1	5364	5364		75.043	14.071	1	547860			14897	7380	9417	9460	15131	15131					0.04940285783413856
GTSDGRILK	9	Unmodified	_GTSDGRILK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7691345214844	2	473.769448	945.524344	-1.5785	-0.00074782	0.901	0.00042686	-0.67746	-0.00032096	473.7697669966492	18.069	0.14408	18.069	17.989	18.133	0					9	4	3	0	0	0	0.023928	1	4664	4664		115.49	45.866	1	364980			14898	7380	9417	9460	15132	15132					0.04940285783413856
GTSDGRILK	9	Unmodified	_GTSDGRILK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7694091796875	2	473.769448	945.524344	-0.4829	-0.00022878	-0.65251	-0.00030914	-1.1354	-0.00053792	473.76930024979026	18.157	0.15893	18.157	18.05	18.209	0					7	3	3	0	0	0	0.21263	1	4675	4675		60.118	12.461	1	186640			14899	7380	9417	9460	15133	15133					0.04940285783413856
GTSDRFSRILK	11	Unmodified	_GTSDRFSRILK_					0	0	0		ENST00000534785.1_1_11:65061654-65063444:+|nuORF;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.24188232421875	3	427.242088	1278.70443	-0.48359	-0.00020661	-0.1676	-7.1607E-05	-0.65119	-0.00027822	427.2420343247537	26.685	0.26806	26.685	26.577	26.845	0					10	5	3	0	0	0	0.54316	1	9572	9572		41.08	9.4458	1	118690			14900	1073	9418	9461	15134	15134					0.07622964720417258
GTSDRFSRILK	11	Unmodified	_GTSDRFSRILK_					0	0	0		ENST00000534785.1_1_11:65061654-65063444:+|nuORF;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.2419738769531	3	427.242088	1278.70443	-0.4055	-0.00017325	0.82271	0.0003515	0.41721	0.00017825	427.2422913241557	26.611	0.26787	26.611	26.553	26.821	0					12	5	4	0	0	0	0.60545	1	9435	9435		36.528	5.4598	1	400380			14901	1073	9418	9461	15135	15135					0.07622964720417258
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2424011230469	2	470.242732	938.470912	0.17385	8.1754E-05	-0.40321	-0.0001896	-0.22935	-0.00010785	470.2425531589694	26.889	0.92094	26.889	26.715	27.636	0					37	22	2	0	0	0	0.0097668	1	9304	9304		141.52	50.744	1	22796000			14902	2602	9419	9462	15136	15136					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2426452636719	2	470.242732	938.470912	-1.2718	-0.00059804	0.74933	0.00035237	-0.52243	-0.00024567	470.24304936920925	26.632	0.42225	26.632	26.519	26.941	0					35	15	4	0	0	0	0.07136	1	8364	8364		87.696	34.345	1	2526800			14903	2602	9419	9462	15137	15137					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.24237060546875	2	470.242732	938.470912	-0.12538	-5.896E-05	-0.50195	-0.00023604	-0.62734	-0.000295	470.2424746091747	26.887	0.40864	26.887	26.778	27.186	0					15	8	2	0	0	0	0.0059092	1	9662	9662		154.12	63.342	1	4954200			14904	2602	9419	9462	15138	15138					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2426452636719	2	470.242732	938.470912	0.60986	0.00028678	-1.0077	-0.00047386	-0.39784	-0.00018708	470.24229349598016	26.87	0.8562	26.87	26.761	27.617	0					24	17	2	0	0	0	0.015496	1	9655	9655		129.42	55.166	1	16686000			14905	2602	9419	9462	15139	15139					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.2423095703125	2	470.242732	938.470912	-0.22137	-0.0001041	-0.32548	-0.00015306	-0.54686	-0.00025715	470.24255651637515	26.712	0.28674	26.712	26.565	26.852	0					12	6	2	0	0	0	0.0012088	1	8626	8626		180.87	90.093	1	2217200			14906	2602	9419	9462	15140	15140					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.2425231933594	2	470.242732	938.470912	-0.62654	-0.00029462	0.0083819	3.9415E-06	-0.61815	-0.00029068	470.2427663291498	26.695	0.58636	26.695	26.552	27.139	0					25	14	3	0	0	0	0.020674	1	8618	8618		120.87	48.991	1	5068800			14907	2602	9419	9462	15141	15141					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2427673339844	2	470.242732	938.470912	-0.5363	-0.00025219	0.64098	0.00030142	0.10469	4.9228E-05	470.2430396739761	26.845	0.87218	26.845	26.705	27.577	0					29	17	2	0	0	0	0.0097668	1	9528	9528		141.52	50.744	1	16695000			14908	2602	9419	9462	15142	15142					-0.0007851171908441756
GTSEGLHLAG	10	Unmodified	_GTSEGLHLAG_					0	0	0		nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1;nc|ENSG00000188878|Q8TES7-3|FBF1;ENST00000585990.5_1_17:73916156-73934230:-|nuORF;nc|ENSG00000188878|Q8TES7-4|FBF1	nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7-4|FBF1	nc|ENSG00000188878|Q8TES7-4|FBF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2373962402344	2	471.237981	940.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.375	1	23.375	22.875	23.875	0								0	0	0	0.37816	1	7124	7124		37.159	5.2042	1				14909	7281;11699	9420	9463	15143	15143					-0.01120280004624874
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2765808105469	2	466.276575	930.538597	0.061455	2.8655E-05	-0.086978	-4.0556E-05	-0.025523	-1.1901E-05	466.2765853707519	32.023	0.29803	32.023	31.921	32.219	0					31	12	3	0	0	0	0.11898	1	10309	10309		75.043	12.936	1	518300			14910	235;234	9421	9464	15144	15144					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.276611328125	2	466.276575	930.538597	0.43783	0.00020415	-0.75106	-0.0003502	-0.31323	-0.00014605	466.27624775982	32.344	0.37337	32.344	32.181	32.555	0					24	9	3	0	0	0	0.048471	1	11839	11839		95.815	28.321	1	2527900			14911	235;234	9421	9464	15145	15145					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2763366699219	2	466.276575	930.538597	-0.66849	-0.0003117	0.57196	0.00026669	-0.096531	-4.501E-05	466.2768099038911	32.336	0.29074	32.336	32.212	32.503	0					20	7	4	0	0	0	0.10915	1	11849	11849		77.318	13.11	1	489700			14912	235;234	9421	9464	15146	15146					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2764892578125	2	466.276575	930.538597	-0.9181	-0.00042809	0.39281	0.00018316	-0.52529	-0.00024493	466.27678611381117	32.094	0.34511	32.094	31.959	32.304	0					34	14	3	0	0	0	0.087861	1	10663	10663		82.241	18.033	1	772210			14913	235;234	9421	9464	15147	15147					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.27642822265625	2	466.276575	930.538597	0.6635	0.00030938	-0.05435	-2.5342E-05	0.60915	0.00028403	466.27659131455226	32.28	0.9351	32.28	31.795	32.73	0					43	21	5	0	0	0	0.035062	1	12241	12241		104.06	37.628	1	5376500			14914	235;234	9421	9464	15148	15148					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2763977050781	2	466.276575	930.538597	-0.62071	-0.00028942	0.60551	0.00028233	-0.015208	-7.0909E-06	466.2767985402407	32.08	0.33121	32.08	31.958	32.289	0					22	9	3	0	0	0	0.035062	1	11109	11109		104.06	36.563	1	613920			14915	235;234	9421	9464	15149	15149					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2765197753906	2	466.276575	930.538597	0.65302	0.00030449	-0.7693	-0.00035871	-0.11628	-5.422E-05	466.27620360420775	32.261	0.51988	32.261	31.952	32.472	0					25	10	4	0	0	0	0.035062	1	12131	12131		104.06	29.802	1	4898200			14916	235;234	9421	9464	15150	15150					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2764587402344	2	466.276575	930.538597	2.6325	0.0012275	-2.4247	-0.0011306	0.20783	9.6908E-05	466.2755558015659	32.248	0.61768	32.248	32.136	32.754	0					26	12	4	0	0	0	0.016683	1	12147	12147		127.46	25.861	1	3215300			14917	235;234	9421	9464	15151	15151					0.07054938211717854
GTSETSKTLK	10	Unmodified	_GTSETSKTLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2853393554688	2	526.285128	1050.5557	0.62678	0.00032987	-0.081124	-4.2694E-05	0.54566	0.00028717	526.2852042080391	14.2	0.1211	14.2	14.134	14.255	0					8	5	2	0	0	0	0.39647	1	2886	2886		56.632	12.255	1	267930			14918	5044	9422	9465	15152	15152					0.032448140268343195
GTSETSKTLK	10	Unmodified	_GTSETSKTLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2855224609375	2	526.285128	1050.5557	0.10013	5.2699E-05	0.50433	0.00026542	0.60447	0.00031812	526.2854351601535	14.531	0.33233	14.531	14.445	14.777	0					14	8	3	0	0	0	0.012989	1	3547	3547		131.62	49.376	1	1938800			14919	5044	9422	9465	15153	15153					0.032448140268343195
GTSETSKTLK	10	Unmodified	_GTSETSKTLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2869873046875	2	526.285128	1050.5557	0.44037	0.00023176	2.5312	0.0013321	2.9716	0.0015639	526.2867015234199	14.224	0.10247	14.224	14.16	14.262	0					10	4	3	0	0	0	0.21577	1	3032	3032		77.533	6.2376	1	137770			14920	5044	9422	9465	15154	15154					0.032448140268343195
GTSEVIHRK	9	Unmodified	_GTSEVIHRK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7885131835938	2	513.788173	1025.56179	0.027132	1.394E-05	0.34806	0.00017883	0.37519	0.00019277	513.7882970405662	14.321	0.091978	14.321	14.276	14.368	0					7	4	2	0	0	0	0.27123	1	2935	2935		45.972	0	1	115660			14921	6160	9423	9466	15155	15155					0.05003377049047231
GTSEVIHRK	9	Unmodified	_GTSEVIHRK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7885131835938	2	513.788173	1025.56179	0.016568	8.5125E-06	0.59294	0.00030465	0.60951	0.00031316	513.7885246961254	14.652	0.21054	14.652	14.566	14.777	0					8	5	2	0	0	0	0.015992	1	3620	3620		136.27	83.331	1	1665900			14922	6160	9423	9466	15156	15156					0.05003377049047231
GTSEVIHRK	9	Unmodified	_GTSEVIHRK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7881469726562	2	513.788173	1025.56179	-0.038052	-1.9551E-05	-0.39567	-0.00020329	-0.43372	-0.00022284	513.7879516774824	14.324	0.11344	14.324	14.241	14.354	0					5	3	2	0	0	0	0.18416	1	3091	3091		47.657	0	1	150510			14923	6160	9423	9466	15157	15157					0.05003377049047231
GTSEVIHRK	9	Unmodified	_GTSEVIHRK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7882690429688	2	513.788173	1025.56179	-0.47462	-0.00024386	0.61366	0.00031529	0.13903	7.1433E-05	513.7884955458557	14.621	0.15482	14.621	14.525	14.68	0					5	3	2	0	0	0	0.22823	1	3842	3842		60.118	23.672	1	1465100			14924	6160	9423	9466	15158	15158					0.05003377049047231
GTSGELSVKEK	11	Unmodified	_GTSGELSVKEK_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant;PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant;PEAK1|p.N1433Tfs*19|1|0.1|ENSG00000173517|chr15:77115099-77115099|T/-|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.8031005859375	2	567.803685	1133.59282	1.1717	0.00066528	-1.3184	-0.00074857	-0.14668	-8.3286E-05	567.803302820999	18.293	0.097864	18.293	18.231	18.329	0					6	4	2	0	0	0	0.36734	1	4531	4531		55.084	19.466	1	45719			14925	6431	9424	9467	15159	15159					0.03136485572622405
GTSGELSVKEK	11	Unmodified	_GTSGELSVKEK_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant;PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant;PEAK1|p.N1433Tfs*19|1|0.1|ENSG00000173517|chr15:77115099-77115099|T/-|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.8040771484375	2	567.803685	1133.59282	0.16968	9.6346E-05	1.0104	0.00057369	1.1801	0.00067004	567.804320096298	18.596	0.14044	18.596	18.501	18.641	0					8	3	3	0	0	0	0.061126	1	5477	5477		99.788	25.533	1	519730			14926	6431	9424	9467	15160	15160					0.03136485572622405
GTSGELSVKEK	11	Unmodified	_GTSGELSVKEK_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant;PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant;PEAK1|p.N1433Tfs*19|1|0.1|ENSG00000173517|chr15:77115099-77115099|T/-|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.80419921875	2	567.803685	1133.59282	-0.30275	-0.0001719	1.6363	0.00092908	1.3335	0.00075718	567.8042522961327	18.306	0.081928	18.306	18.25	18.332	0					6	3	2	0	0	0	0.55968	1	4752	4752		39.873	2.0616	1	79676			14927	6431	9424	9467	15161	15161					0.03136485572622405
GTSGELSVKEK	11	Unmodified	_GTSGELSVKEK_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant;PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant;PEAK1|p.N1433Tfs*19|1|0.1|ENSG00000173517|chr15:77115099-77115099|T/-|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.804443359375	2	567.803685	1133.59282	0.2845	0.00016154	0.60525	0.00034366	0.88975	0.00050521	567.804247213234	18.536	0.16789	18.536	18.427	18.595	0					5	3	2	0	0	0	0.080725	1	5715	5715		94.409	32.302	1	557840			14928	6431	9424	9467	15162	15162					0.03136485572622405
GTSGELSVKKK	11	Unmodified	_GTSGELSVKKK_					0	0	0		PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant	PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant	PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.3323974609375	2	567.32987	1132.64519	2.1257	0.001206	-0.10231	-5.8041E-05	2.0234	0.0011479	567.3298909330415	50.866	0.44282	50.866	50.629	51.072	0					44	28	2	0	0	0	0.68382	1	15807	15807		29.17	4.6509	1	85974			14929	11920	9425	9468	15163	15163					0.08417068706239661
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant;ITPKA|p.K290Vfs*10|1|0.3|ENSG00000137825|chr15:41502054-41502055|-/ATGT|frameshift_variant;ENSG00000137825|ENST00000260386|ITPKA	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7976989746094	2	472.798009	943.581465	-0.33758	-0.0001596	-0.36103	-0.0001707	-0.69861	-0.0003303	472.79793508801913	23.18	0.15969	23.18	23.1	23.26	0					11	4	3	0	0	0	0.11898	1	6655	6655		75.043	5.4157	1	670630			14930	4200	9426	9469	15164	15164					0.10741753059812709
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant;ITPKA|p.K290Vfs*10|1|0.3|ENSG00000137825|chr15:41502054-41502055|-/ATGT|frameshift_variant;ENSG00000137825|ENST00000260386|ITPKA	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.79766845703125	2	472.798009	943.581465	-0.5556	-0.00026269	-0.016732	-7.9111E-06	-0.57233	-0.0002706	472.79802019125003	23.523	0.30285	23.523	23.433	23.736	0					20	7	4	0	0	0	0.035062	1	7787	7787		104.06	16.36	1	4248000			14931	4200	9426	9469	15165	15165					0.10741753059812709
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant;ITPKA|p.K290Vfs*10|1|0.3|ENSG00000137825|chr15:41502054-41502055|-/ATGT|frameshift_variant;ENSG00000137825|ENST00000260386|ITPKA	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7976989746094	2	472.798009	943.581465	-0.69945	-0.0003307	0.07074	3.3446E-05	-0.62871	-0.00029725	472.7979943561045	23.244	0.17233	23.244	23.166	23.338	0					12	5	3	0	0	0	0.24334	1	6947	6947		56.434	5.0983	1	409410			14932	4200	9426	9469	15166	15166					0.10741753059812709
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant;ITPKA|p.K290Vfs*10|1|0.3|ENSG00000137825|chr15:41502054-41502055|-/ATGT|frameshift_variant;ENSG00000137825|ENST00000260386|ITPKA	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7978210449219	2	472.798009	943.581465	-0.68859	-0.00032556	0.34276	0.00016206	-0.34583	-0.00016351	472.79816974957976	23.436	0.41669	23.436	23.329	23.745	0					18	8	4	0	0	0	0.020674	1	8084	8084		120.87	22.239	1	2132500			14933	4200	9426	9469	15167	15167					0.10741753059812709
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant;ITPKA|p.K290Vfs*10|1|0.3|ENSG00000137825|chr15:41502054-41502055|-/ATGT|frameshift_variant;ENSG00000137825|ENST00000260386|ITPKA	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	ITPKA|p.S212L|1|0.18|ENSG00000137825|chr15:41501683-41501683|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.79754638671875	2	472.798009	943.581465	-2.4781	-0.0011716	1.5138	0.00071572	-0.96426	-0.0004559	472.79869017444673	23.292	0.19871	23.292	23.188	23.387	0					10	4	3	0	0	0	0.12834	1	7073	7073		72.879	5.3856	1	312070			14934	4200	9426	9469	15168	15168					0.10741753059812709
GTSGLSSLK	9	Unmodified	_GTSGLSSLK_					0	0	0		nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2372131347656	2	425.23745	848.460347	0.89814	0.00038192	-1.0468	-0.00044516	-0.14871	-6.3237E-05	425.23699694378627	20.772	0.46619	20.772	20.612	21.078	0					19	9	4	0	0	0	0.0041499	1	6771	6771		161.9	7.7799	1	6805800			14935	6403	9427	9470	15169	15169					0.030055056264814084
GTSGLSSLK	9	Unmodified	_GTSGLSSLK_					0	0	0		nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2372741699219	2	425.23745	848.460347	-0.030581	-1.3004E-05	-0.39337	-0.00016728	-0.42396	-0.00018028	425.237282746964	20.604	0.23106	20.604	20.477	20.708	0					13	5	3	0	0	0	0.012915	1	5813	5813		134.81	5.3895	1	614060			14936	6403	9427	9470	15170	15170					0.030055056264814084
GTSGPHVGK	9	Unmodified	_GTSGPHVGK_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.2220458984375	2	420.222134	838.429715	-0.19375	-8.1417E-05	-0.32765	-0.00013768	-0.52139	-0.0002191	420.221978831756	13.841	0.3906	13.841	13.587	13.978	0					45	19	3	0	0	0	0.35021	1	2700	2700		45.972	8.8131	1	907660			14937	2703	9428	9471	15171	15171					0.004037720320980043
GTSGPHVGK	9	Unmodified	_GTSGPHVGK_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.2218933105469	2	420.222134	838.429715	-0.90844	-0.00038174	0.35498	0.00014917	-0.55345	-0.00023257	420.22229372363745	14.113	1.2522	14.113	13.771	15.023	0					73	31	5	0	0	0	0.034359	2	3276	3276;3442		104.75	38.943	1	9343000			14938	2703	9428	9471	15172;15173	15172					0.004037720320980043
GTSGPHVGK	9	Unmodified	_GTSGPHVGK_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.2216796875	2	420.222134	838.429715	-0.94672	-0.00039783	0.50582	0.00021256	-0.4409	-0.00018528	420.22239052545393	13.869	0.24138	13.869	13.686	13.927	0					15	11	2	0	0	0	0.27249	1	2880	2880		52.937	14.131	1	154910			14939	2703	9428	9471	15174	15174					0.004037720320980043
GTSGPHVGK	9	Unmodified	_GTSGPHVGK_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.22198486328125	2	420.222134	838.429715	0.3823	0.00016065	-0.69358	-0.00029146	-0.31128	-0.00013081	420.22187657799003	14.066	0.40812	14.066	13.809	14.217	0					16	8	3	0	0	0	0.25716	1	3531	3531		54.776	1.4249	1	724280			14940	2703	9428	9471	15175	15175					0.004037720320980043
GTSGPHVGK	9	Unmodified	_GTSGPHVGK_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.22210693359375	2	420.222134	838.429715	1.0546	0.00044315	-0.48486	-0.00020375	0.56971	0.0002394	420.2219968287773	14.068	0.4083	14.068	13.848	14.257	0					17	8	3	0	0	0	0.50858	1	3396	3396		31.53	2.3803	1	242200			14941	2703	9428	9471	15176	15176					0.004037720320980043
GTSGPHVGKK	10	Unmodified	_GTSGPHVGKK_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.26922607421875	2	484.269616	966.524678	-0.19414	-9.4018E-05	-0.4282	-0.00020736	-0.62234	-0.00030138	484.2694270452798	12.568	0.28286	12.568	12.376	12.659	0					15	9	2	0	0	0	0.097781	1	2664	2664		95.815	33.708	1	499950			14942	2703	9429	9472	15177	15177					0.04007705503283887
GTSGPHVGKK	10	Unmodified	_GTSGPHVGKK_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.26947021484375	2	484.269616	966.524678	-0.62364	-0.00030201	0.035916	1.7393E-05	-0.58772	-0.00028461	484.26960455209905	12.581	0.3837	12.581	12.37	12.754	0					15	9	3	0	0	0	0.21754	1	2878	2878		77.318	8.5308	1	347890			14943	2703	9429	9472	15178	15178					0.04007705503283887
GTSISFHVL	9	Unmodified	_GTSISFHVL_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.76104736328125	2	480.761092	959.507631	-1.3701	-0.00065869	1.2069	0.00058025	-0.16314	-7.8434E-05	480.7617238529025	32.969	0.30649	32.969	32.794	33.101	0					14	12	2	0	0	0	0.51817	1	11025	11025		30.504	1.3541	1	89352	+		14944	20919	9430	9473	15179	15179					0.026257848974637454
GTSITVPQK	9	Unmodified	_GTSITVPQK_					0	0	0		TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant;ENSG00000134851|ENST00000381334|TMEM165;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.76641845703125	2	465.766374	929.518196	-0.67521	-0.00031449	0.03432	1.5985E-05	-0.64089	-0.0002985	465.7666504522116	23.912	0.18782	23.912	23.819	24.006	0					10	4	3	0	0	0	0.056004	1	7972	7972		93.143	26.714	1	1149200			14945	3945	9431	9474	15180	15180					0.05061767551910634
GTSITVPQK	9	Unmodified	_GTSITVPQK_					0	0	0		TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant;ENSG00000134851|ENST00000381334|TMEM165;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7666320800781	2	465.766374	929.518196	-1.1623	-0.00054138	0.33159	0.00015444	-0.83076	-0.00038694	465.7667121000638	23.639	0.14286	23.639	23.558	23.701	0					8	5	2	0	0	0	0.21263	1	7120	7120		60.118	12.461	1	104310			14946	3945	9431	9474	15181	15181					0.05061767551910634
GTSITVPQK	9	Unmodified	_GTSITVPQK_					0	0	0		TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant;ENSG00000134851|ENST00000381334|TMEM165;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7666320800781	2	465.766374	929.518196	-1.1523	-0.00053672	1.11	0.00051702	-0.042288	-1.9696E-05	465.7668999994976	23.838	0.21915	23.838	23.728	23.947	0					7	4	2	0	0	0	0.11898	1	8255	8255		75.043	12.936	1	739610			14947	3945	9431	9474	15182	15182					0.05061767551910634
GTSITVPQK	9	Unmodified	_GTSITVPQK_					0	0	0		TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant;ENSG00000134851|ENST00000381334|TMEM165;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.76629638671875	2	465.766374	929.518196	2.6249	0.0012226	-3.7461	-0.0017448	-1.1212	-0.00052222	465.76525758238927	23.804	0.11607	23.804	23.747	23.863	0					6	2	3	0	0	0	0.3269	1	8135	8135		47.96	1.1931	1	950160			14948	3945	9431	9474	15183	15183					0.05061767551910634
GTSKSSELKK	10	Unmodified	_GTSKSSELKK_					0	0	0		CCDC92|p.S183Afs*24|1|0.43|ENSG00000119242|chr12:123937508-123937508|C/-|frameshift_variant;CCDC92|p.I268Sfs*40|1|0.29|ENSG00000119242|chr12:123937253-123937253|G/-|frameshift_variant;nc|ENSG00000119242|Q53HC0-2|CCDC92;ENSG00000119242|ENST00000238156|CCDC92	CCDC92|p.S183Afs*24|1|0.43|ENSG00000119242|chr12:123937508-123937508|C/-|frameshift_variant	CCDC92|p.S183Afs*24|1|0.43|ENSG00000119242|chr12:123937508-123937508|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.8016967773438	2	532.800946	1063.58734	1.717	0.00091483	-0.5514	-0.00029379	1.1656	0.00062104	532.8006265616807	12.282	0.21581	12.282	12.138	12.354	0					6	5	2	0	0	0	0.16745	1	2729	2729		83.647	25.417	1	178280			14949	415	9432	9475	15184	15184					0.058088067808284904
GTSKSSELKK	10	Unmodified	_GTSKSSELKK_					0	0	0		CCDC92|p.S183Afs*24|1|0.43|ENSG00000119242|chr12:123937508-123937508|C/-|frameshift_variant;CCDC92|p.I268Sfs*40|1|0.29|ENSG00000119242|chr12:123937253-123937253|G/-|frameshift_variant;nc|ENSG00000119242|Q53HC0-2|CCDC92;ENSG00000119242|ENST00000238156|CCDC92	CCDC92|p.S183Afs*24|1|0.43|ENSG00000119242|chr12:123937508-123937508|C/-|frameshift_variant	CCDC92|p.S183Afs*24|1|0.43|ENSG00000119242|chr12:123937508-123937508|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8023071289062	2	532.800946	1063.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.23	1	12.23	11.73	12.73	0								0	0	0	0.2634	1	2556	2556		56.434	3.0823	1				14950	415	9432	9475	15185	15185					0.058088067808284904
GTSLRPAEGQ	10	Unmodified	_GTSLRPAEGQ_					0	0	0		ENST00000358701.9_2_9:139098411-139098615:-|nuORF	ENST00000358701.9_2_9:139098411-139098615:-|nuORF	ENST00000358701.9_2_9:139098411-139098615:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.1771240234375	3	339.177084	1014.50942	0.22731	7.71E-05	-0.32938	-0.00011172	-0.10206	-3.4617E-05	339.177000984099	12.963	0.082371	12.963	12.912	12.994	0					8	3	3	0	0	0	0.45669	1	2498	2498		50.034	0	1	632090			14951	8837	9433	9476	15186	15186					0.0027479391542328813
GTSMWVLVK	9	Unmodified	_GTSMWVLVK_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.78106689453125	2	510.78097	1019.54739	1.206	0.00061599	-1.2919	-0.00065989	-0.085937	-4.3895E-05	510.7802638999046	44.159	0.23592	44.159	44.062	44.297	0					20	13	2	0	0	0	0.098791	1	17208	17208		79.713	21.901	1	115090			14952	7429	9434	9477	15187	15187					0.038395885765453386
GTSNGNQLVST	11	Unmodified	_GTSNGNQLVST_					0	0	0		ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2634887695312	2	539.262185	1076.50982	3.4258	0.0018474	-1.1275	-0.00060804	2.2983	0.0012394	539.2618329639118	40.088	0.76745	40.088	39.852	40.619	0					33	17	3	0	0	0	0.42065	1	15898	15898		50.034	9.9753	1	394710			14953	2405	9435	9478	15188	15188					-0.025378311553595267
GTSNTTAIK	9	Unmodified	_GTSNTTAIK_					0	0	0		RBBP5|p.P419Hfs*9|2|0.3|ENSG00000117222|chr1:205096822-205096822|G/-|frameshift_variant;nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	RBBP5|p.P419Hfs*9|2|0.3|ENSG00000117222|chr1:205096822-205096822|G/-|frameshift_variant	RBBP5|p.P419Hfs*9|2|0.3|ENSG00000117222|chr1:205096822-205096822|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.7402648925781	2	446.740357	891.46616	0.6055	0.0002705	-0.95003	-0.00042442	-0.34454	-0.00015392	446.73997309662474	15.9	0.17795	15.9	15.813	15.991	0					7	4	2	0	0	0	0.44593	1	4216	4216		37.812	4.9991	1	264420			14954	3027	9436	9479	15189	15189					0.016086041381299765
GTSNTTAIK	9	Unmodified	_GTSNTTAIK_					0	0	0		RBBP5|p.P419Hfs*9|2|0.3|ENSG00000117222|chr1:205096822-205096822|G/-|frameshift_variant;nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	RBBP5|p.P419Hfs*9|2|0.3|ENSG00000117222|chr1:205096822-205096822|G/-|frameshift_variant	RBBP5|p.P419Hfs*9|2|0.3|ENSG00000117222|chr1:205096822-205096822|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.7401123046875	2	446.740357	891.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.854	1	15.854	15.354	16.354	0								0	0	0	0.091378	1	4418	4418		74.165	2.2875	1				14955	3027	9436	9479	15190	15190					0.016086041381299765
GTSQLYVYR	9	Unmodified	_GTSQLYVYR_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2844848632812	2	543.782556	1085.55056	1.1622	0.00063197	-0.19275	-0.00010482	0.96942	0.00052716	543.7825085070259	30.732	0.15684	30.732	30.646	30.803	0					15	6	3	0	0	0	0.070005	1	9803	9803		88.177	50.365	1	246460			14956	684	9437	9480	15191	15191					0.01120554954900399
GTSQLYVYR	9	Unmodified	_GTSQLYVYR_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7828979492188	2	543.782556	1085.55056	0.35067	0.00019069	0.83016	0.00045143	1.1808	0.00064212	543.7831541984058	30.952	0.25911	30.952	30.865	31.124	0					14	6	4	0	0	0	0.02429	1	11222	11222		114.89	54.776	1	1300300			14957	684	9437	9480	15192	15192					0.01120554954900399
GTSQLYVYR	9	Unmodified	_GTSQLYVYR_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7826538085938	2	543.782556	1085.55056	0.38518	0.00020945	1.0525	0.00057235	1.4377	0.0007818	543.7826778449759	30.745	0.10186	30.745	30.713	30.815	0					5	3	2	0	0	0	0.10506	1	10132	10132		78.264	21.543	1	128820			14958	684	9437	9480	15193	15193					0.01120554954900399
GTSQLYVYR	9	Unmodified	_GTSQLYVYR_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.78271484375	2	543.782556	1085.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.752	1	30.752	30.252	31.252	0								0	0	0	0.12601	1	10129	10129		65.465	21.088	1				14959	684	9437	9480	15194	15194					0.01120554954900399
GTSQLYVYR	9	Unmodified	_GTSQLYVYR_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7830200195312	2	543.782556	1085.55056	0.32291	0.00017559	-0.080638	-4.3849E-05	0.24227	0.00013174	543.7825544591976	30.974	0.33505	30.974	30.88	31.216	0					12	7	3	0	0	0	0.047855	1	11644	11644		96.034	44.698	1	246510			14960	684	9437	9480	15195	15195					0.01120554954900399
GTSQLYVYR	9	Unmodified	_GTSQLYVYR_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.78271484375	2	543.782556	1085.55056	-1.4922	-0.00081145	3.9433	0.0021443	2.4511	0.0013329	543.784448920458	30.761	0.11333	30.761	30.68	30.793	0					8	3	3	0	0	0	0.056004	1	10506	10506		93.143	32.171	1	316060			14961	684	9437	9480	15196	15196					0.01120554954900399
GTSQLYVYR	9	Unmodified	_GTSQLYVYR_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7828979492188	2	543.782556	1085.55056	3.6524	0.0019861	-1.2628	-0.00068671	2.3896	0.0012994	543.7817298452679	30.949	0.11372	30.949	30.848	30.962	0					6	2	3	0	0	0	0.02429	1	11509	11509		114.89	45.267	1	1168200			14962	684	9437	9480	15197	15197					0.01120554954900399
GTSSAVSLK	9	Unmodified	_GTSSAVSLK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000483996.1_1_7:872152-878624:+|nuORF;nc|ENSG00000164828|O94901-4|SUN1;ENST00000427969.5_1_7:878456-882177:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2376403808594	2	425.23745	848.460347	0.308	0.00013098	-0.027653	-1.1759E-05	0.28035	0.00011922	425.2373500321835	20.513	0.19802	20.513	20.409	20.607	0					13	6	3	0	0	0	0.026538	1	5489	5489		112.41	7.6644	1	359420			14963	5733	9438	9481	15198	15198					0.030055056264814084
GTSSAVSLK	9	Unmodified	_GTSSAVSLK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000483996.1_1_7:872152-878624:+|nuORF;nc|ENSG00000164828|O94901-4|SUN1;ENST00000427969.5_1_7:878456-882177:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.2375793457031	2	425.23745	848.460347	-1.0779	-0.00045835	0.57683	0.00024529	-0.50103	-0.00021306	425.2376937599983	20.53	0.19767	20.53	20.438	20.636	0					16	6	3	0	0	0	0.12834	1	5730	5730		72.879	1.0018	1	727420			14964	5733	9438	9481	15199	15199					0.030055056264814084
GTSSAVSLK	9	Unmodified	_GTSSAVSLK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000483996.1_1_7:872152-878624:+|nuORF;nc|ENSG00000164828|O94901-4|SUN1;ENST00000427969.5_1_7:878456-882177:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.23748779296875	2	425.23745	848.460347	0.15247	6.4838E-05	-0.24129	-0.00010261	-0.08882	-3.777E-05	425.23741096752576	20.578	0.13722	20.578	20.492	20.629	0					5	3	2	0	0	0	0.078509	1	5821	5821		85.161	17.667	1	158180			14965	5733	9438	9481	15200	15200					0.030055056264814084
GTSSAVSLK	9	Unmodified	_GTSSAVSLK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000483996.1_1_7:872152-878624:+|nuORF;nc|ENSG00000164828|O94901-4|SUN1;ENST00000427969.5_1_7:878456-882177:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.2372131347656	2	425.23745	848.460347	-0.37837	-0.0001609	0.084402	3.5891E-05	-0.29397	-0.00012501	425.2374643478911	20.751	0.31711	20.751	20.591	20.909	0					13	6	3	0	0	0	0.032383	1	6627	6627		106.68	8.0537	1	2557400			14966	5733	9438	9481	15201	15201					0.030055056264814084
GTSSKQVVK	9	Unmodified	_GTSSKQVVK_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.27130126953125	2	467.271824	932.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.858	1	12.858	12.358	13.358	0								0	0	0	0.20989	1	2797	2797		49.536	7.1399	1				14967	3418	9439	9482	15202	15202					0.06013169926200135
GTSSKQVVK	9	Unmodified	_GTSSKQVVK_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2713928222656	2	467.271824	932.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.817	1	12.817	12.317	13.317	0								0	0	0	0.30009	1	2823	2823		35.152	0.97948	1				14968	3418	9439	9482	15203	15203					0.06013169926200135
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.27862548828125	2	508.276575	1014.5386	-0.57523	-0.00029238	2.3742	0.0012068	1.799	0.00091439	508.27791910702945	38.243	0.27605	38.243	38.107	38.383	0					32	14	3	0	0	0	0.38666	1	12888	12888		42.864	16.171	1	312280			14969	280	9440	9483	15204	15204					0.03190938211707817
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2781677246094	2	508.276575	1014.5386	1.1451	0.00058204	-0.21473	-0.00010914	0.9304	0.0004729	508.276788428179	38.462	0.43467	38.462	38.305	38.739	0					63	15	5	0	0	0	0.13267	1	15063	15063		71.877	20.542	1	1511000			14970	280	9440	9483	15205	15205					0.03190938211707817
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2768859863281	2	508.276575	1014.5386	0.10035	5.1008E-05	0.88705	0.00045087	0.98741	0.00050188	508.2770100447448	38.215	0.22578	38.215	38.12	38.346	0					18	11	2	0	0	0	0.42902	1	13662	13662		39.253	8.9351	1	129670			14971	280	9440	9483	15206	15206					0.03190938211707817
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.27655029296875	2	508.276575	1014.5386	1.3196	0.00067074	-2.2023	-0.0011194	-0.88271	-0.00044866	508.2759502780823	38.403	0.63551	38.403	38.251	38.886	0					35	13	5	0	0	0	0.07136	1	15085	15085		87.696	21.267	1	1200800			14972	280	9440	9483	15207	15207					0.03190938211707817
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.27850341796875	2	508.276575	1014.5386	2.9745	0.0015119	-0.49951	-0.00025389	2.475	0.001258	508.27641584929904	38.384	0.59123	38.384	38.186	38.778	0					38	12	5	0	0	0	0.056004	1	15076	15076		93.143	36.511	1	2646000			14973	280	9440	9483	15208	15208					0.03190938211707817
GTSSLTATK	9	Unmodified	_GTSSLTATK_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.2344970703125	2	433.234907	864.455261	-0.48482	-0.00021004	-1.1556	-0.00050063	-1.6404	-0.00071067	433.2342492191665	17.192	0.14993	17.192	17.166	17.316	0					5	4	2	0	0	0	0.35021	1	4245	4245		45.972	0	1	57046			14974	4441	9441	9484	15209	15209					0.017612017638612087
GTSSMIVPK	9	Unmodified	_GTSSMIVPK_					0	0	0		nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2501220703125	2	460.249503	918.484453	-0.68703	-0.00031621	0.85389	0.000393	0.16686	7.6796E-05	460.250103989109	25.62	0.21892	25.62	25.525	25.744	0					20	5	5	0	0	0	0.0406	1	8764	8764		98.629	5.4339	1	5496500			14975	5865	9442	9485	15210	15210					0.021950227884985907
GTSSMIVPK	9	Unmodified	_GTSSMIVPK_					0	0	0		nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.250244140625	2	460.249503	918.484453	-0.89003	-0.00040964	1.2495	0.00057506	0.35943	0.00016543	460.25036084235234	25.351	0.25355	25.351	25.253	25.507	0					28	9	4	0	0	0	0.07136	1	7868	7868		87.696	10.379	1	839400			14976	5865	9442	9485	15211	15211					0.021950227884985907
GTSSMIVPK	9	Unmodified	_GTSSMIVPK_					0	0	0		nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.25030517578125	2	460.249503	918.484453	0.72254	0.00033255	-0.051181	-2.3556E-05	0.67135	0.00030899	460.2497436885745	25.594	0.31297	25.594	25.442	25.755	0					23	6	5	0	0	0	0.063823	1	9090	9090		90.37	16.115	1	5056300			14977	5865	9442	9485	15212	15212					0.021950227884985907
GTSSMIVPK	9	Unmodified	_GTSSMIVPK_					0	0	0		nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.24945068359375	2	460.249503	918.484453	-0.81121	-0.00037336	1.3514	0.000622	0.54023	0.00024864	460.2502040426701	25.578	0.26173	25.578	25.476	25.738	0					11	5	3	0	0	0	0.19605	1	9105	9105		62.107	5.3864	1	560430			14978	5865	9442	9485	15213	15213					0.021950227884985907
GTSSMIVPK	9	Unmodified	_GTSSMIVPK_					0	0	0		nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.25042724609375	2	460.249503	918.484453	2.5371	0.0011677	-1.8703	-0.00086083	0.66679	0.00030689	460.24891768270055	25.539	0.27024	25.539	25.431	25.701	0					20	5	5	0	0	0	0.063823	1	8945	8945		90.37	16.115	1	6910200			14979	5865	9442	9485	15214	15214					0.021950227884985907
GTSSRSTK	8	Unmodified	_GTSSRSTK_					0	0	0		ENSG00000115159|ENST00000438166|GPD2;GPD2|p.F204Sfs*10|1|0.44|ENSG00000115159|chr2:156513444-156513444|T/-|frameshift_variant	ENSG00000115159|ENST00000438166|GPD2	ENSG00000115159|ENST00000438166|GPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.218994140625	2	412.217049	822.419545	2.9052	0.0011976	1.4862	0.00061264	4.3914	0.0018102	412.21776308896006	26.426	1.3247	26.426	26.218	27.543	0					54	26	5	0	0	0	0.46905	1	9321	9321		63.306	63.306	1	30194000			14980	2885	9443	9486	15215	15215					0.0012316430687633328
GTSSSAASSLK	11	Unmodified	_GTSSSAASSLK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.25360107421875	2	498.253828	994.493104	-0.054683	-2.7246E-05	0.47003	0.00023419	0.41535	0.00020695	498.25399888471696	17.521	0.15331	17.521	17.437	17.59	0					9	5	2	0	0	0	0.33569	1	4185	4185		58.63	10.67	1	212910			14981	1238;220	9444	9487	15216	15216					-0.004363320413176552
GTSSSAASSLK	11	Unmodified	_GTSSSAASSLK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.25384521484375	2	498.253828	994.493104	-0.25858	-0.00012884	-0.020165	-1.0047E-05	-0.27874	-0.00013888	498.2537600452016	17.827	0.25705	17.827	17.685	17.942	0					12	6	4	0	0	0	0.00078532	1	5100	5100		136.52	48.819	1	1140600			14982	1238;220	9444	9487	15217	15217					-0.004363320413176552
GTSSSAASSLK	11	Unmodified	_GTSSSAASSLK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2533874511719	2	498.253828	994.493104	-1.2857	-0.00064063	0.39922	0.00019891	-0.88653	-0.00044172	498.25414396665246	17.557	0.077805	17.557	17.487	17.564	0					6	2	3	0	0	0	0.089609	1	4411	4411		92.239	39.302	1	232750			14983	1238;220	9444	9487	15218	15218					-0.004363320413176552
GTSSSAASSLK	11	Unmodified	_GTSSSAASSLK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.25372314453125	2	498.253828	994.493104	-0.70008	-0.00034882	0.32493	0.0001619	-0.37515	-0.00018692	498.25389801272286	17.777	0.22046	17.777	17.718	17.939	0					8	4	3	0	0	0	0.045275	1	5349	5349		107.45	34.576	1	959650			14984	1238;220	9444	9487	15219	15219					-0.004363320413176552
GTSSSAASSLK	11	Unmodified	_GTSSSAASSLK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.25372314453125	2	498.253828	994.493104	-2.2368	-0.0011145	1.7465	0.00087022	-0.49027	-0.00024428	498.2546624397623	17.594	0.11406	17.594	17.526	17.64	0					5	3	2	0	0	0	0.061126	1	4422	4422		99.788	26.909	1	151410			14985	1238;220	9444	9487	15220	15220					-0.004363320413176552
GTSSSAASSLK	11	Unmodified	_GTSSSAASSLK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2536926269531	2	498.253828	994.493104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.785	1	17.785	17.285	18.285	0								0	0	0	5.9279E-05	1	5195	5195		136.52	56.06	1				14986	1238;220	9444	9487	15221	15221					-0.004363320413176552
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.255859375	2	453.256174	904.497795	-0.007691	-3.486E-06	-0.47297	-0.00021438	-0.48066	-0.00021786	453.25594539888857	21.619	0.3244	21.619	21.528	21.852	0					30	10	4	0	0	0	0.003936	1	5972	5972		163.15	32.12	1	7529600			14987	1502	9445	9488	15222	15222					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.2557373046875	2	453.256174	904.497795	-0.34272	-0.00015534	-0.14014	-6.352E-05	-0.48286	-0.00021886	453.25612932217183	21.614	0.33896	21.614	21.539	21.878	0					27	10	4	0	0	0	0.0067848	1	5965	5965		150.36	25.767	1	3731300			14988	1502	9445	9488	15223	15223					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2558288574219	2	453.256174	904.497795	0.691	0.0003132	-1.3204	-0.00059847	-0.62938	-0.00028527	453.25558371619815	21.963	0.87447	21.963	21.823	22.698	0					44	20	4	0	0	0	0.0016668	1	7052	7052		176.44	41.634	1	28032000			14989	1502	9445	9488	15224	15224					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2559814453125	2	453.256174	904.497795	-0.54029	-0.00024489	-0.35397	-0.00016044	-0.89425	-0.00040532	453.2560584977171	21.956	0.44028	21.956	21.854	22.295	0					32	10	5	0	0	0	0.0016668	1	7042	7042		176.44	54.269	1	21072000			14990	1502	9445	9488	15225	15225					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.25579833984375	2	453.256174	904.497795	-1.1962	-0.00054217	0.42778	0.00019389	-0.76838	-0.00034827	453.2563727869315	21.67	0.4377	21.67	21.546	21.984	0					38	13	5	0	0	0	0.0067848	1	6235	6235		150.36	31.619	1	11949000			14991	1502	9445	9488	15226	15226					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2558288574219	2	453.256174	904.497795	0.31627	0.00014335	-0.72964	-0.00033071	-0.41337	-0.00018736	453.25584132815607	21.694	0.10804	21.694	21.641	21.749	0					4	2	2	0	0	0	0.25761	1	6344	6344		54.722	3.5297	1	106550			14992	1502	9445	9488	15227	15227					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.255859375	2	453.256174	904.497795	0.00099755	4.5215E-07	-0.70975	-0.0003217	-0.70875	-0.00032125	453.2558726084803	21.728	0.6964	21.728	21.608	22.304	0					31	16	4	0	0	0	0.00026591	1	6335	6335		190.26	32.932	1	7950300			14993	1502	9445	9488	15228	15228					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25579833984375	2	453.256174	904.497795	-0.41564	-0.00018839	-0.39626	-0.00017961	-0.8119	-0.000368	453.25598215266984	21.848	0.26567	21.848	21.738	22.004	0					11	5	3	0	0	0	0.047855	1	7187	7187		96.034	20.99	1	1193400			14994	1502	9445	9488	15229	15229					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.255859375	2	453.256174	904.497795	0.87735	0.00039766	-1.4381	-0.00065183	-0.56075	-0.00025416	453.2556311835437	21.879	0.86757	21.879	21.721	22.589	0					46	17	5	0	0	0	0.003936	1	7157	7157		163.15	40.975	1	51739000			14995	1502	9445	9488	15230	15230					0.0417259689210141
GTSSVIVSRK	10	Unmodified	_GTSSVIVSRK_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.3038940429688	2	517.303655	1032.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.778	1	17.778	17.278	18.278	0								0	0	0	0.27575	1	4306	4306		54.722	10.345	1				14996	1502	9446	9489	15231	15231					0.07776530363275924
GTSSVIVSRK	10	Unmodified	_GTSSVIVSRK_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.3037109375	2	517.303655	1032.59276	0.043891	2.2705E-05	0.15522	8.0294E-05	0.19911	0.000103	517.3036107521452	18.076	0.23418	18.076	17.975	18.209	0					6	5	2	0	0	0	0.28675	1	5231	5231		68.846	22.894	1	829630			14997	1502	9446	9489	15232	15232					0.07776530363275924
GTSSVIVSRK	10	Unmodified	_GTSSVIVSRK_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.303955078125	2	517.303655	1032.59276	-0.463	-0.00023951	0.84529	0.00043727	0.38229	0.00019776	517.3041984737727	18.03	0.11742	18.03	17.971	18.088	0					6	2	3	0	0	0	0.092915	1	5472	5472		96.665	39.944	1	1527900			14998	1502	9446	9489	15233	15233					0.07776530363275924
GTSTGIISK	9	Unmodified	_GTSTGIISK_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2451171875	2	432.245275	862.475997	-0.47006	-0.00020318	0.34974	0.00015117	-0.12032	-5.2008E-05	432.24534054911703	20.876	0.14894	20.876	20.782	20.931	0					8	3	3	0	0	0	0.063171	1	6543	6543		90.601	8.3603	1	603180			14999	2964	9447	9490	15234	15234					0.039257921435250864
GTSTGIISK	9	Unmodified	_GTSTGIISK_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.2453308105469	2	432.245275	862.475997	0.97761	0.00042257	-1.0362	-0.00044791	-0.058627	-2.5341E-05	432.2447770316635	20.772	0.2678	20.772	20.612	20.88	0					11	5	3	0	0	0	0.095583	1	6796	6796		80.455	10.827	1	1716200			15000	2964	9447	9490	15235	15235					0.039257921435250864
GTSWVFGVLA	10	Unmodified	_GTSWVFGVLA_					0	0	0		nc|ENSG00000111452|Q6QNK2-3|ADGRD1;nc|ENSG00000111452|Q6QNK2-2|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1;ENST00000540207.1_1_12:131606534-131623805:+|nuORF	nc|ENSG00000111452|Q6QNK2-3|ADGRD1	nc|ENSG00000111452|Q6QNK2-3|ADGRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7789306640625	2	518.776742	1035.53893	0.2675	0.00013877	3.8022	0.0019725	4.0697	0.0021113	518.7788417549243	37.527	0.35856	37.527	37.268	37.627	0					13	7	2	0	0	0	0.58896	1	14691	14691		35.618	0.41757	1	84713			15001	2670	9448	9491	15236	15236					0.02258357931577848
GTSYPVTGR	9	Unmodified	_GTSYPVTGR_					0	0	0		ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2401123046875	2	469.240524	936.466495	-0.12636	-5.9294E-05	-1.1777	-0.00055264	-1.3041	-0.00061194	469.24016871073815	21.483	0.26805	21.483	21.424	21.692	0					11	5	4	0	0	0	0.22837	1	7145	7145		58.23	17.452	1	301350			15002	10719	9449	9492	15237	15237					-0.004279761419979877
GTSYQSAVL	9	Unmodified	_GTSYQSAVL_					0	0	0			REV__EHD2|p.G65S|1|0.27|ENSG00000024422|chr19:47716805-47716805|G/A|missense_variant	REV__EHD2|p.G65S|1|0.27|ENSG00000024422|chr19:47716805-47716805|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.23480224609375	2	463.234907	924.455261	0.70222	0.00032529	1.6051	0.00074354	2.3073	0.0010688	463.2344349668258	31.145	0.58311	31.145	30.854	31.438	0					49	13	5	0	0	0	0.087861	1	11721	11721		82.241	19.262	1	1433000	+		15003	12776	9450	9493	15238	15238					-0.00998798236150833
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7686462402344	2	475.768917	949.523281	-0.18134	-8.6275E-05	-0.63275	-0.00030105	-0.81409	-0.00038732	475.76866079513263	27.638	0.38981	27.638	27.492	27.882	0					37	12	5	0	0	0	0.021961	1	8533	8533		118.74	39.292	1	2488400			15004	241	9451	9494	15239	15239					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7688903808594	2	475.768917	949.523281	-0.40594	-0.00019313	-0.40436	-0.00019238	-0.8103	-0.00038552	475.7687928529933	27.92	0.82801	27.92	27.736	28.564	0					49	20	5	0	0	0	0.023928	1	9797	9797		115.49	27.74	1	11698000			15005	241	9451	9494	15240	15240					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7685852050781	2	475.768917	949.523281	-1.5453	-0.00073521	0.82168	0.00039093	-0.72363	-0.00034428	475.76929828431116	27.679	0.41531	27.679	27.523	27.938	0					41	14	4	0	0	0	0.010494	1	8823	8823		139.97	55.055	1	2822800			15006	241	9451	9494	15241	15241					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7686462402344	2	475.768917	949.523281	-0.48329	-0.00022993	-0.042588	-2.0262E-05	-0.52588	-0.0002502	475.7690213953714	27.659	0.13292	27.659	27.602	27.735	0					7	4	2	0	0	0	0.4966	1	8834	8834		32.812	8.2932	1	75910			15007	241	9451	9494	15242	15242					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7685852050781	2	475.768917	949.523281	0.6255	0.00029759	-1.3588	-0.00064646	-0.73326	-0.00034886	475.76832042313555	27.905	0.69012	27.905	27.601	28.291	0					47	14	5	0	0	0	0.010494	1	10148	10148		139.97	55.055	1	15423000			15008	241	9451	9494	15243	15243					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7685546875	2	475.768917	949.523281	-0.44435	-0.00021141	-0.14078	-6.6979E-05	-0.58513	-0.00027839	475.7687835242759	27.889	0.26076	27.889	27.781	28.042	0					12	5	3	0	0	0	0.18416	1	10166	10166		63.534	20.67	1	430510			15009	241	9451	9494	15244	15244					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.76934814453125	2	475.768917	949.523281	-0.40207	-0.00019129	-0.14565	-6.9298E-05	-0.54772	-0.00026059	475.76884920375954	27.705	0.25915	27.705	27.616	27.875	0					14	6	3	0	0	0	0.035062	1	9088	9088		104.06	43.939	1	696480			15010	241	9451	9494	15245	15245					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.76873779296875	2	475.768917	949.523281	0.76031	0.00036173	-1.4747	-0.0007016	-0.71436	-0.00033987	475.76827028430733	27.851	0.66844	27.851	27.543	28.211	0					35	13	4	0	0	0	0.0033339	1	10006	10006		166.68	55.03	1	5775500			15011	241	9451	9494	15246	15246					0.04650071414528156
GTTAVLTEK	9	Unmodified	_GTTAVLTEK_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2584228515625	2	460.258382	918.502212	-0.43523	-0.00020032	0.11025	5.0742E-05	-0.32498	-0.00014958	460.25845210831534	22.021	0.18486	22.021	21.942	22.127	0					9	5	2	0	0	0	0.47473	1	6169	6169		35.152	6.8977	1	89601			15012	4128	9452	9495	15247	15247					0.03970061314987561
GTTAVLTEK	9	Unmodified	_GTTAVLTEK_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2580871582031	2	460.258382	918.502212	-0.68428	-0.00031495	0.30467	0.00014023	-0.37961	-0.00017472	460.258474345183	22.379	0.15018	22.379	22.323	22.474	0					5	3	2	0	0	0	0.14578	1	7271	7271		68.846	14.07	1	689700			15013	4128	9452	9495	15248	15248					0.03970061314987561
GTTAVLTEK	9	Unmodified	_GTTAVLTEK_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2579040527344	2	460.258382	918.502212	-0.89046	-0.00040984	0.31821	0.00014646	-0.57225	-0.00026338	460.25846398654636	22.077	0.13462	22.077	22.007	22.141	0					10	4	3	0	0	0	0.27123	1	6446	6446		53.089	6.3225	1	182310			15014	4128	9452	9495	15249	15249					0.03970061314987561
GTTAVLTEK	9	Unmodified	_GTTAVLTEK_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2581481933594	2	460.258382	918.502212	0.72236	0.00033247	-1.4707	-0.00067691	-0.74836	-0.00034444	460.2577249511793	22.261	0.16254	22.261	22.204	22.367	0					8	3	3	0	0	0	0.12834	1	7521	7521		72.879	16.158	1	1059800			15015	4128	9452	9495	15250	15250					0.03970061314987561
GTTAVLTEK	9	Unmodified	_GTTAVLTEK_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2580261230469	2	460.258382	918.502212	-2.558	-0.0011774	2.1149	0.00097339	-0.44316	-0.00020397	460.25926250035974	22.119	0.18149	22.119	22.02	22.202	0					8	4	3	0	0	0	0.53064	1	6560	6560		29.17	2.4771	1	141690			15016	4128	9452	9495	15251	15251					0.03970061314987561
GTTCFKLAPPL	11	Unmodified	_GTTCFKLAPPL_					0	0	0		ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.543701171875	3	383.210849	1146.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.165	1	21.165	20.665	21.665	0								0	0	0	0.45674	1	6976	6976		24.232	0.70912	1				15017	1968	9453	9496	15252	15252					0.043275292938005805
GTTDFIHLK	9	Unmodified	_GTTDFIHLK_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2798461914062	2	516.279649	1030.54475	0.035865	1.8516E-05	0.88619	0.00045752	0.92205	0.00047604	516.2802522499735	33.081	0.48619	33.081	32.893	33.379	0					18	13	2	0	0	0	0.078509	1	12206	12206		85.161	18.732	1	623690			15018	42	9454	9497	15253	15253					0.030694564432451443
GTTEAIFTPPE	11	Unmodified	_GTTEAIFTPPE_					0	0	0		ENST00000468432.1_1_6:66498672-66498885:+|nuORF	ENST00000468432.1_1_6:66498672-66498885:+|nuORF	ENST00000468432.1_1_6:66498672-66498885:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.7860717773438	2	581.784961	1161.55537	-0.16253	-9.456E-05	2.1166	0.0012314	1.9541	0.0011368	581.7863683194394	31.783	0.7967	31.783	31.324	32.121	0					61	31	3	0	0	0	0.7326	1	10422	10422		24.519	1.9395	1	198640			15019	9812	9455	9498	15254	15254					-0.018946056930190025
GTTEWFHLK	9	Unmodified	_GTTEWFHLK_					0	0	0		ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.2877197265625	2	559.785099	1117.55564	0.5065	0.00028353	0.74093	0.00041476	1.2474	0.00069829	559.78511684023	37.447	0.54399	37.447	37.246	37.79	0					32	16	3	0	0	0	0.21263	1	14176	14176		60.118	3.6845	1	271260			15020	1880	9456	9499	15255	15255					0.0015685881751323905
GTTEWFHLK	9	Unmodified	_GTTEWFHLK_					0	0	0		ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7852783203125	2	559.785099	1117.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.363	1	37.363	36.863	37.863	0								0	0	0	0.072369	1	14601	14601		79.713	18.741	1				15021	1880	9456	9499	15256	15256					0.0015685881751323905
GTTGAVLGQK	10	Unmodified	_GTTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2633361816406	2	466.263999	930.513445	-0.43792	-0.00020418	-0.65823	-0.00030691	-1.0961	-0.00051109	466.2636828710941	20.725	0.18996	20.725	20.624	20.814	0					11	6	3	0	0	0	0.0084313	1	5589	5589		150.36	42.274	1	271590			15022	7581	9457	9500	15257	15257					0.045408834091631434
GTTGAVLGQK	10	Unmodified	_GTTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.26373291015625	2	466.263999	930.513445	-0.66882	-0.00031185	0.25305	0.00011799	-0.41577	-0.00019386	466.2640899354764	21.049	0.25785	21.049	20.959	21.217	0					16	6	4	0	0	0	0.0084313	1	6620	6620		150.36	62.665	1	1622700			15023	7581	9457	9500	15258	15258					0.045408834091631434
GTTGAVLGQK	10	Unmodified	_GTTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2640075683594	2	466.263999	930.513445	-1.1645	-0.00054298	0.5363	0.00025006	-0.62824	-0.00029293	466.2645540360023	20.749	0.10664	20.749	20.68	20.786	0					5	3	2	0	0	0	0.31613	1	5839	5839		65.465	22.601	1	113880			15024	7581	9457	9500	15259	15259					0.045408834091631434
GTTGAVLGQK	10	Unmodified	_GTTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.26361083984375	2	466.263999	930.513445	-1.1822	-0.00055124	0.39557	0.00018444	-0.78667	-0.0003668	466.26418823638346	20.955	0.21451	20.955	20.847	21.062	0					8	4	3	0	0	0	0.073977	1	6884	6884		101.25	24.478	1	666220			15025	7581	9457	9500	15260	15260					0.045408834091631434
GTTGAVLGQK	10	Unmodified	_GTTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2637023925781	2	466.263999	930.513445	-2.2631	-0.0010552	1.8667	0.00087038	-0.3964	-0.00018483	466.26480218743484	20.817	0.19912	20.817	20.677	20.876	0					7	4	2	0	0	0	0.27065	1	5914	5914		70.816	14.382	1	215700			15026	7581	9457	9500	15261	15261					0.045408834091631434
GTTHGIGK	8	Unmodified	_GTTHGIGK_					0	0	0			REV__PPID|p.I134Yfs*21|1|0.34|ENSG00000171497|chr4:158717134-158717135|-/A|frameshift_variant	REV__PPID|p.I134Yfs*21|1|0.34|ENSG00000171497|chr4:158717134-158717135|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.711181640625	2	385.711402	769.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.168	1	12.168	11.668	12.668	0								0	0	0	1.7419	1	2528	2528		38.806	6.8513	1		+		15027	16414	9458	9501	15262	15262					0.014323870033877029
GTTHLKPYVF	10	Unmodified	_GTTHLKPYVF_					0	0	0		UGT3A2|p.A468T|1|0.28|ENSG00000168671|chr5:36035868-36035868|C/T|missense_variant	UGT3A2|p.A468T|1|0.28|ENSG00000168671|chr5:36035868-36035868|C/T|missense_variant	UGT3A2|p.A468T|1|0.28|ENSG00000168671|chr5:36035868-36035868|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.545166015625	3	388.213358	1161.61824	0.52143	0.00020243	-1.7784	-0.0006904	-1.257	-0.00048797	388.2141569445552	32.055	1.1742	32.055	31.701	32.875	0					61	23	4	0	0	0	0.52275	1	12157	12157		42.864	5.2644	1	970800			15028	23088	9459	9502	15263	15263					0.04390004885704002
GTTHNFLYK	9	Unmodified	_GTTHNFLYK_					0	0	0		ENST00000599239.5_1_19:48565437-48599986:-|nuORF;ENST00000596510.5_1_19:48556252-48575644:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7802734375	2	540.777274	1079.53999	0.28036	0.00015161	3.2689	0.0017678	3.5493	0.0019194	540.7792357783865	24.781	0.50471	24.781	24.643	25.148	0					30	12	4	0	0	0	0.30841	1	8375	8375		49.536	5.1589	1	1862400			15029	2366	9460	9503	15264	15264					0.003405723004561878
GTTHNFLYK	9	Unmodified	_GTTHNFLYK_					0	0	0		ENST00000599239.5_1_19:48565437-48599986:-|nuORF;ENST00000596510.5_1_19:48556252-48575644:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7775268554688	2	540.777274	1079.53999	0.30908	0.00016714	-0.30671	-0.00016586	0.0023687	1.2809E-06	540.7772837359906	24.737	0.1648	24.737	24.677	24.842	0					6	3	2	0	0	0	0.10915	1	8705	8705		77.318	34.921	1	225050			15030	2366	9460	9503	15265	15265					0.003405723004561878
GTTITLVLK	9	Unmodified	_GTTITLVLK_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.302734375	2	473.302593	944.590633	-0.53293	-0.00025224	0.96981	0.00045902	0.43689	0.00020678	473.3029488886768	38.732	0.25484	38.732	38.643	38.897	0					23	10	3	0	0	0	0.078509	1	14717	14717		85.161	18.732	1	684540			15031	5919	9461	9504	15266	15266					0.11612101625462401
GTTITLVLK	9	Unmodified	_GTTITLVLK_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.3030090332031	2	473.302593	944.590633	-1.5427	-0.00073018	1.8318	0.00086698	0.28904	0.0001368	473.3034769236333	38.446	0.2676	38.446	38.378	38.646	0					18	14	3	0	0	0	0.54081	1	12967	12967		28.081	0.19925	1	149660			15032	5919	9461	9504	15267	15267					0.11612101625462401
GTTITLVLK	9	Unmodified	_GTTITLVLK_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.30242919921875	2	473.302593	944.590633	-2.5118	-0.0011888	1.784	0.00084437	-0.72781	-0.00034447	473.30332774760706	38.425	0.19392	38.425	38.354	38.548	0					13	9	2	0	0	0	0.22837	1	13740	13740		58.23	15.755	1	166780			15033	5919	9461	9504	15268	15268					0.11612101625462401
GTTITLVLK	9	Unmodified	_GTTITLVLK_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.302978515625	2	473.302593	944.590633	2.4032	0.0011375	-1.8704	-0.00088525	0.53286	0.0002522	473.3016931247753	38.619	0.26796	38.619	38.51	38.778	0					14	5	3	0	0	0	0.16806	1	15185	15185		65.465	17.808	1	821250			15034	5919	9461	9504	15269	15269					0.11612101625462401
GTTKVDALK	9	Unmodified	_GTTKVDALK_					0	0	0		MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant;ENSG00000115204|ENST00000380044|MPV17	MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant	MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.77435302734375	2	466.7742	931.533846	-0.18554	-8.6605E-05	0.89964	0.00041993	0.7141	0.00033333	466.7745053285258	17.884	0.23969	17.884	17.794	18.034	0					7	5	2	0	0	0	0.12278	1	4562	4562		74.165	4.5374	1	264930			15035	2887	9462	9505	15270	15270					0.06534054068958994
GTTLRYVTI	9	Unmodified	_GTTLRYVTI_					0	0	0			REV__ENST00000538878.5_1_Y:15522901-15560940:-|nuORF	REV__ENST00000538878.5_1_Y:15522901-15560940:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2949829101562	2	512.295299	1022.57605	1.0559	0.00054094	-1.0738	-0.00055009	-0.01786	-9.1498E-06	512.2945755412708	17.147	0.25479	17.147	16.98	17.235	0					12	6	3	0	0	0	0.48623	1	4819	4819		14.137	0	1	396090	+		15036	20120	9463	9506	15271	15271					0.06566029477335178
GTTMYIHNK	9	Unmodified	_GTTMYIHNK_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7627563476562	2	532.763309	1063.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.352	1	19.352	18.852	19.852	0								0	0	0	0.3368	1	4991	4991		27.882	4.8398	1				15037	4733	9464	9507	15272	15272					-0.017150739512771906
GTTMYIHNK	9	Unmodified	_GTTMYIHNK_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7633666992188	2	532.763309	1063.51206	0.12949	6.899E-05	0.31437	0.00016748	0.44386	0.00023647	532.7633340417589	19.657	0.19177	19.657	19.554	19.746	0					10	4	3	0	0	0	0.098791	1	5982	5982		79.713	32.055	1	676090			15038	4733	9464	9507	15273	15273					-0.017150739512771906
GTTPPVKKK	9	Unmodified	_GTTPPVKKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.30010986328125	2	478.300384	954.586216	-0.44003	-0.00021046	-0.013639	-6.5236E-06	-0.45367	-0.00021699	478.30035485054475	12.176	0.18108	12.176	12.084	12.265	0					9	4	3	0	0	0	0.098791	1	2680	2680		79.713	8.4169	1	863080			15039	6160	9465	9508	15274	15274					0.10710637202566886
GTTRFAHLK	9	Unmodified	_GTTRFAHLK_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.19793701171875	3	344.197931	1029.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.109	1	19.109	18.609	19.609	0								0	0	0	0.30504	1	5707	5707		67.494	41.43	1				15040	3216	9466	9509	15275	15275					0.05835984774262215
GTTSHDSQFEL	11	Unmodified	_GTTSHDSQFEL_					0	0	0			REV__ENSG00000183117|ENST00000635120|CSMD1	REV__ENSG00000183117|ENST00000635120|CSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.273193359375	2	611.272749	1220.53095	-0.63037	-0.00038533	0.6944	0.00042447	0.064024	3.9136E-05	611.2732482826638	31.526	0.16242	31.526	31.454	31.616	0					11	6	2	0	0	0	0.48922	1	10451	10451		45.022	9.4039	1	90005	+		15041	16916	9467	9510	15276	15276					-0.07049865846511238
GTTSQDSALR	10	Unmodified	_GTTSQDSALR_					0	0	0		PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant	PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant	PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.258056640625	2	518.256902	1034.49925	0.2494	0.00012925	2.6822	0.0013901	2.9316	0.0015193	518.2580158663351	30.586	0.11718	30.586	30.529	30.646	0					4	2	2	0	0	0	0.56063	1	11356	11356		38.754	1.5945	1	105950			15042	11965	9468	9511	15277	15277					-0.016618138098010604
GTTVSLNSL	9	Unmodified	_GTTVSLNSL_					0	0	0			REV__ENSG00000135577|ENST00000258042|NMBR	REV__ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.242431640625	2	446.242732	890.470912	-1.1678	-0.0005211	0.66875	0.00029843	-0.49901	-0.00022268	446.2430098383997	19.761	0.32572	19.761	19.555	19.881	0					31	11	4	0	0	0	0.35021	1	5344	5344		45.972	1.5951	1	744240	+		15043	14812	9469	9512	15278	15278					0.021294882809115734
GTTYPAETLSP	11	Unmodified	_GTTYPAETLSP_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.7756958007812	2	568.777136	1135.53972	0.11129	6.3298E-05	-2.6945	-0.0015326	-2.5832	-0.0014693	568.7758164471134	31.024	0.21365	31.024	30.923	31.137	0					12	8	2	0	0	0	0.56817	1	10269	10269		39.253	5.0803	1	57355			15044	4282	9470	9513	15279	15279					-0.022628922100466298
GTVAFALTK	9	Unmodified	_GTVAFALTK_					0	0	0		ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.265380859375	2	454.26601	906.517468	0.71107	0.00032301	-1.4416	-0.00065486	-0.73052	-0.00033185	454.2651931789019	34.209	0.27805	34.209	34.105	34.383	0					13	7	3	0	0	0	0.035106	1	12721	12721		104.01	38.548	1	231360			15045	3497	9471	9514	15280	15280					0.06046972902845482
GTVAFALTK	9	Unmodified	_GTVAFALTK_					0	0	0		ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2656555175781	2	454.26601	906.517468	0.062962	2.8601E-05	-0.30469	-0.00013841	-0.24173	-0.00010981	454.26582449989064	33.952	0.1491	33.952	33.89	34.039	0					7	4	2	0	0	0	0.28897	1	11971	11971		51.193	8.7966	1	57963			15046	3497	9471	9514	15281	15281					0.06046972902845482
GTVAFALTK	9	Unmodified	_GTVAFALTK_					0	0	0		ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2657165527344	2	454.26601	906.517468	-2.6251	-0.0011925	1.4323	0.00065064	-1.1928	-0.00054187	454.26707303964065	33.972	0.1865	33.972	33.878	34.065	0					9	5	3	0	0	0	0.27249	1	11993	11993		52.937	5.0211	1	81491			15047	3497	9471	9514	15282	15282					0.06046972902845482
GTVAGAAVL	9	Unmodified	_GTVAGAAVL_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.7241516113281	2	379.723978	757.433404	0.52337	0.00019874	-0.54448	-0.00020675	-0.021103	-8.0132E-06	379.7237674895596	21.321	0.61686	21.321	21.135	21.751	0					41	20	3	0	0	0	0.27781	2	5814	5814;5974		52.299	9.8247	1	668990			15048	5364	9472	9515	15283;15284	15283					0.044984418059470954
GTVAGAAVL	9	Unmodified	_GTVAGAAVL_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.72369384765625	2	379.723978	757.433404	0.29107	0.00011053	-0.28849	-0.00010955	0.002579	9.7931E-07	379.7238424704366	21.457	0.57565	21.457	21.261	21.837	0					27	13	3	0	0	0	0.27781	1	6169	6169		52.299	6.3472	1	419140			15049	5364	9472	9515	15285	15285					0.044984418059470954
GTVAGAAVLLK	11	Unmodified	_GTVAGAAVLLK_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.3127136230469	2	500.313492	998.612431	-0.047865	-2.3947E-05	-0.30461	-0.0001524	-0.35247	-0.00017635	500.3132131936467	34.969	0.15463	34.969	34.917	35.072	0					15	6	3	0	0	0	0.074075	1	11444	11444		96.034	15.579	1	218380			15050	5364	9473	9516	15286	15286					0.11306906374045411
GTVAGAAVLLK	11	Unmodified	_GTVAGAAVLLK_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.31298828125	2	500.313492	998.612431	-0.15871	-7.9405E-05	-0.078948	-3.9499E-05	-0.23766	-0.0001189	500.3133723836748	35.302	0.35262	35.302	35.142	35.495	0					20	9	3	0	0	0	6.1213E-05	1	13201	13201		155.58	40.69	1	969280			15051	5364	9473	9516	15287	15287					0.11306906374045411
GTVAGAAVLLK	11	Unmodified	_GTVAGAAVLLK_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.3134765625	2	500.313492	998.612431	-1.1115	-0.00055608	0.94326	0.00047193	-0.16821	-8.4158E-05	500.31380248996794	35.082	0.21263	35.082	34.978	35.19	0					17	9	3	0	0	0	0.0009242	1	11831	11831		134.77	46.589	1	183080			15052	5364	9473	9516	15288	15288					0.11306906374045411
GTVAGAAVLLK	11	Unmodified	_GTVAGAAVLLK_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.3133239746094	2	500.313492	998.612431	-0.61389	-0.00030714	0.34982	0.00017502	-0.26407	-0.00013212	500.31356957690303	35.251	0.33659	35.251	35.123	35.459	0					22	9	4	0	0	0	3.2823E-05	1	13635	13635		168.26	53.364	1	823670			15053	5364	9473	9516	15289	15289					0.11306906374045411
GTVDCVQAR	9	Unmodified	_GTVDCVQAR_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7313537597656	2	474.732009	947.449465	-0.010115	-4.8021E-06	-1.093	-0.00051887	-1.1031	-0.00052367	474.7321252563361	21.464	0.40001	21.464	21.351	21.751	0					28	14	4	0	0	0	0.085655	1	5904	5904		82.75	8.4954	1	433230			15054	4928	9474	9517	15290	15290					-0.026362200194625984
GTVDCVQAR	9	Unmodified	_GTVDCVQAR_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.73162841796875	2	474.732009	947.449465	-0.12038	-5.7149E-05	-0.96571	-0.00045845	-1.0861	-0.0005156	474.73174669505823	21.683	0.51169	21.683	21.526	22.037	0					21	10	4	0	0	0	0.016683	1	7215	7215		127.46	3.3816	1	2322800			15055	4928	9474	9517	15291	15291					-0.026362200194625984
GTVDCVQAR	9	Unmodified	_GTVDCVQAR_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7313232421875	2	474.732009	947.449465	-0.099723	-4.7342E-05	-0.52284	-0.00024821	-0.62257	-0.00029555	474.73208024911105	21.551	0.25388	21.551	21.448	21.702	0					12	6	3	0	0	0	0.02953	2	6259	6235;6259		109.48	2.4708	1	289950			15056	4928	9474	9517	15292;15293	15293					-0.026362200194625984
GTVDCVQAR	9	Unmodified	_GTVDCVQAR_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7315673828125	2	474.732009	947.449465	-0.60324	-0.00028638	-0.85795	-0.0004073	-1.4612	-0.00069367	474.731933388552	21.696	0.66756	21.696	21.437	22.105	0					29	13	4	0	0	0	0.02953	1	7090	7090		109.48	19.109	1	3498800			15057	4928	9474	9517	15294	15294					-0.026362200194625984
GTVDCVQAR	9	Unmodified	_GTVDCVQAR_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.73175048828125	2	474.732009	947.449465	0.71152	0.00033778	0.95794	0.00045476	1.6695	0.00079254	474.73303919161395	21.679	0.71559	21.679	21.571	22.287	0					23	14	2	0	0	0	0.023928	1	7104	7104		115.49	13.893	1	2659100			15058	4928	9474	9517	15295	15295					-0.026362200194625984
GTVDKKMVEK	10	Unmodified	_GTVDKKMVEK_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;ENSG00000110395|ENST00000264033|CBL	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.8774719238281	3	378.877758	1133.61144	2.4174	0.00091592	-2.0264	-0.00076777	0.391	0.00014814	378.8768604510358	15.888	0.086853	15.888	15.842	15.929	0					6	4	2	0	0	0	0.2978	1	3529	3529		70.399	31.684	1	61881			15059	386	9475	9518	15296	15296					0.049983239428229354
GTVDKKMVEK	10	Unmodified	_GTVDKKMVEK_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;ENSG00000110395|ENST00000264033|CBL	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.8779602050781	3	378.877758	1133.61144	0.77485	0.00029357	-0.049679	-1.8822E-05	0.72517	0.00027475	378.8776847357018	16.217	0.107	16.217	16.118	16.225	0					6	2	3	0	0	0	0.11308	1	4338	4338		104.42	32.18	1	162170			15060	386	9475	9518	15297	15297					0.049983239428229354
GTVDKKMVEK	10	Unmodified	_GTVDKKMVEK_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;ENSG00000110395|ENST00000264033|CBL	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.81396484375	2	567.812999	1133.61144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.92	1	15.92	15.42	16.42	0								0	0	0	0.11831	1	3721	3721		76.17	9.7404	1				15061	386	9475	9518	15298	15298					0.049983239428229354
GTVDKKMVEK	10	Unmodified	_GTVDKKMVEK_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;ENSG00000110395|ENST00000264033|CBL	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.8779602050781	3	378.877758	1133.61144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.161	1	16.161	15.661	16.661	0								0	0	0	0.060762	1	4564	4564		90.149	18.271	1				15062	386	9475	9518	15299	15299					0.049983239428229354
GTVDKKMVEK	10	Unmodified	_GTVDKKMVEK_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;ENSG00000110395|ENST00000264033|CBL	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.8132934570312	2	567.812999	1133.61144	1.9497	0.0011071	-1.5166	-0.00086117	0.43306	0.0002459	567.812303213771	16.171	0.16616	16.171	16.064	16.23	0					9	3	4	0	0	0	0.0049346	1	4555	4555		166.07	38.609	1	506670			15063	386	9475	9518	15300	15300					0.049983239428229354
GTVDKKMVEK	10	Unmodified	_GTVDKKMVEK_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;ENSG00000110395|ENST00000264033|CBL	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.814208984375	2	567.812999	1133.61144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.952	1	15.952	15.452	16.452	0								0	0	0	0.081515	1	3678	3678		83.647	17.218	1				15064	386	9475	9518	15301	15301					0.049983239428229354
GTVDPQELQK	10	Unmodified	_GTVDPQELQK_					0	0	0		ENST00000472930.6_1_7:87835795-87839460:-|nuORF;nc|ENSG00000075142|P30626-3|SRI;nc|ENSG00000075142|P30626-2|SRI;ENSG00000075142|ENST00000265729|SRI;ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000472930.6_1_7:87835795-87839460:-|nuORF	ENST00000472930.6_1_7:87835795-87839460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.790771484375	2	557.790578	1113.5666	0.54148	0.00030203	-0.88805	-0.00049534	-0.34656	-0.00019331	557.7905632075451	25.227	0.36382	25.227	24.969	25.333	0					23	8	4	0	0	0	0.041742	1	8563	8563		112.11	2.6289	1	974100			15065	1534	9476	9519	15302	15302					0.014362164011345158
GTVDPQELQK	10	Unmodified	_GTVDPQELQK_					0	0	0		ENST00000472930.6_1_7:87835795-87839460:-|nuORF;nc|ENSG00000075142|P30626-3|SRI;nc|ENSG00000075142|P30626-2|SRI;ENSG00000075142|ENST00000265729|SRI;ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000472930.6_1_7:87835795-87839460:-|nuORF	ENST00000472930.6_1_7:87835795-87839460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7911376953125	2	557.790578	1113.5666	0.11942	6.6612E-05	-0.75199	-0.00041945	-0.63257	-0.00035284	557.7909690389704	24.994	0.29679	24.994	24.806	25.102	0					21	9	3	0	0	0	0.22691	1	7688	7688		76.17	6.5421	1	161620			15066	1534	9476	9519	15303	15303					0.014362164011345158
GTVDPQELQK	10	Unmodified	_GTVDPQELQK_					0	0	0		ENST00000472930.6_1_7:87835795-87839460:-|nuORF;nc|ENSG00000075142|P30626-3|SRI;nc|ENSG00000075142|P30626-2|SRI;ENSG00000075142|ENST00000265729|SRI;ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000472930.6_1_7:87835795-87839460:-|nuORF	ENST00000472930.6_1_7:87835795-87839460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7911376953125	2	557.790578	1113.5666	-0.17956	-0.00010016	0.78202	0.0004362	0.60246	0.00033605	557.7912257191534	25.201	0.21757	25.201	25.073	25.29	0					7	4	2	0	0	0	0.20981	1	8919	8919		78.264	6.3863	1	120640			15067	1534	9476	9519	15304	15304					0.014362164011345158
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.236328125	3	402.236051	1203.68632	0.60611	0.0002438	-1.3819	-0.00055586	-0.77582	-0.00031206	402.2355335735274	33.294	0.12471	33.294	33.225	33.349	0					9	5	2	0	0	0	0.76133	1	10804	10804		21.78	1.4654	1	50409			15068	7557	9477	9520	15305	15305					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.5707702636719	3	402.236051	1203.68632	0.94886	0.00038167	-0.78205	-0.00031457	0.16681	6.7097E-05	402.235680282472	33.486	0.36907	33.486	33.339	33.708	0					22	9	4	0	0	0	0.57554	1	12368	12368		38.714	4.6276	1	744210			15069	7557	9477	9520	15306	15306					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.8504638671875	2	602.850438	1203.68632	-0.32895	-0.00019831	0.59582	0.00035919	0.26687	0.00016088	602.8507518238524	33.493	0.37032	33.493	33.327	33.698	0					25	9	4	0	0	0	0.00057589	1	12396	12396		134.77	13.897	1	662180			15070	7557	9477	9520	15307	15307					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	402.57000732421875	3	402.236051	1203.68632	-1.3431	-0.00054024	1.0232	0.00041157	-0.31988	-0.00012867	402.2364081093788	33.317	0.3547	33.317	33.189	33.544	0					26	14	3	0	0	0	0.60833	1	11156	11156		36.318	1.1656	1	167370			15071	7557	9477	9520	15308	15308					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.8507690429688	2	602.850438	1203.68632	0.34412	0.00020745	-0.23475	-0.00014152	0.10937	6.5933E-05	602.8501751882998	33.351	0.16265	33.351	33.248	33.411	0					8	6	2	0	0	0	0.23231	1	11163	11163		61.691	39.112	1	67051			15072	7557	9477	9520	15309	15309					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.8502807617188	2	602.850438	1203.68632	0.33556	0.00020229	0.037575	2.2652E-05	0.37313	0.00022494	602.8504173241025	33.472	0.31953	33.472	33.326	33.646	0					17	7	3	0	0	0	0.084685	1	12804	12804		76.17	28.21	1	515240			15073	7557	9477	9520	15310	15310					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.2361145019531	3	402.236051	1203.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.281	1	33.281	32.781	33.781	0								0	0	0	0.37035	1	11663	11663		42.338	18.96	1				15074	7557	9477	9520	15311	15311					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.23590087890625	3	402.236051	1203.68632	0.53034	0.00021332	-0.59128	-0.00023783	-0.060935	-2.451E-05	402.2357660727915	33.466	0.41663	33.466	33.283	33.7	0					30	8	5	0	0	0	0.23242	1	12700	12700		70.399	31.645	1	2249400			15075	7557	9477	9520	15312	15312					0.09262829745671297
GTVEKWLQ	8	Unmodified	_GTVEKWLQ_					0	0	0			REV__nc|ENSG00000128573|O15409-2|FOXP2	REV__nc|ENSG00000128573|O15409-2|FOXP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7603454589844	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.976	1	32.976	32.476	33.476	0								0	0	0	1.7419	1	11526	11526		39.253	1.4413	1		+		15076	14517	9478	9521	15313	15313					0.026257848974637454
GTVGYEVQIKR	11	Unmodified	_GTVGYEVQIKR_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.23468017578125	3	417.234822	1248.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.766	1	16.766	16.266	17.266	0								0	0	0	0.42918	1	4710	4710		30.569	5.4429	1		+		15077	12906	9479	9522	15314	15314					0.06824159971824884
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.8046264648438	2	563.803823	1125.59309	1.4439	0.00081409	-0.62385	-0.00035173	0.82008	0.00046236	563.8035288610774	25.154	0.17402	25.154	25.023	25.197	0					12	5	3	0	0	0	0.14426	1	7514	7514		87.696	32.92	1	164250			15078	4688	9480	9523	15315	15315					0.035319500831292316
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.8042602539062	2	563.803823	1125.59309	1.7801	0.0010036	-1.1818	-0.00066628	0.5983	0.00033732	563.8031590891151	25.418	0.3064	25.418	25.289	25.595	0					20	7	4	0	0	0	0.0011498	1	8676	8676		180.87	70.75	1	1096100			15079	4688	9480	9523	15316	15316					0.035319500831292316
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.8043823242188	2	563.803823	1125.59309	0.13365	7.5351E-05	0.60155	0.00033915	0.73519	0.00041451	563.8042481551045	25.192	0.37697	25.192	25.03	25.407	0					25	12	3	0	0	0	0.073977	1	7783	7783		101.25	48.316	1	604050			15080	4688	9480	9523	15317	15317					0.035319500831292316
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.8048706054688	2	563.803823	1125.59309	1.8826	0.0010614	-0.92397	-0.00052094	0.95864	0.00054049	563.8032038983175	25.401	0.56658	25.401	25.188	25.755	0					25	11	4	0	0	0	0.0029705	1	8998	8998		172.25	81.879	1	3596400			15081	4688	9480	9523	15318	15318					0.035319500831292316
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.8041381835938	2	563.803823	1125.59309	0.88439	0.00049862	0.028453	1.6042E-05	0.91285	0.00051467	563.8039578645402	25.253	0.31563	25.253	25.128	25.443	0					18	7	4	0	0	0	0.2538	1	7974	7974		72.879	26.907	1	440310			15082	4688	9480	9523	15319	15319					0.035319500831292316
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.8050537109375	2	563.803823	1125.59309	-1.0442	-0.00058874	2.8128	0.0015859	1.7685	0.00099711	563.8052876053758	25.243	0.22619	25.243	25.159	25.386	0					12	5	3	0	0	0	0.05785	1	7987	7987		106.68	55.49	1	219350			15083	4688	9480	9523	15320	15320					0.035319500831292316
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.80419921875	2	563.803823	1125.59309	1.7476	0.00098532	-0.80165	-0.00045197	0.94599	0.00053335	563.8034386988015	25.338	0.57359	25.338	25.144	25.718	0					28	11	4	0	0	0	0.0090663	1	8833	8833		146.79	69.468	1	3113300			15084	4688	9480	9523	15321	15321					0.035319500831292316
GTVIHFNNPK	10	Unmodified	_GTVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.8049926757812	2	563.803823	1125.59309	3.4699	0.0019564	-0.92339	-0.00052061	2.5465	0.0014357	563.8027276475926	25.333	0.57394	25.333	25.127	25.701	0					19	11	2	0	0	0	0.021567	1	8849	8849		124.08	46.763	1	2157700			15085	4688	9480	9523	15322	15322					0.035319500831292316
GTVITSVIK	9	Unmodified	_GTVITSVIK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.28656005859375	2	459.286943	916.559333	0.072187	3.3155E-05	-0.72866	-0.00033467	-0.65648	-0.00030151	459.2866077336018	33.255	0.17793	33.255	33.171	33.349	0					11	7	2	0	0	0	0.13267	1	10796	10796		71.877	16.373	1	104700			15086	11499	9481	9524	15323	15323					0.09771528591386414
GTVITSVIK	9	Unmodified	_GTVITSVIK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2865295410156	2	459.286943	916.559333	-0.93429	-0.00042911	-0.027949	-1.2837E-05	-0.96224	-0.00044194	459.28696051200563	33.308	0.20729	33.308	33.21	33.418	0					18	8	3	0	0	0	0.11898	1	11157	11157		75.043	16.813	1	205580			15087	11499	9481	9524	15324	15324					0.09771528591386414
GTVITSVIK	9	Unmodified	_GTVITSVIK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2867126464844	2	459.286943	916.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.277	1	33.277	32.777	33.777	0								0	0	0	0.095784	1	11661	11661		72.879	14.649	1				15088	11499	9481	9524	15325	15325					0.09771528591386414
GTVITSVIK	9	Unmodified	_GTVITSVIK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2862243652344	2	459.286943	916.559333	-2.6132	-0.0012002	1.7791	0.0008171	-0.83414	-0.00038311	459.28761850262515	33.289	0.24323	33.289	33.171	33.414	0					11	7	2	0	0	0	0.3269	1	11654	11654		47.96	1.9873	1	208810			15089	11499	9481	9524	15326	15326					0.09771528591386414
GTVITSVIK	9	Unmodified	_GTVITSVIK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2867431640625	2	459.286943	916.559333	-0.44557	-0.00020465	-0.57978	-0.00026629	-1.0254	-0.00047093	459.2867215376843	33.458	0.21795	33.458	33.348	33.566	0					8	4	3	0	0	0	0.24334	1	12732	12732		56.434	6.8977	1	210400			15090	11499	9481	9524	15327	15327					0.09771528591386414
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.80517578125	2	538.303321	1074.59209	0.82167	0.00044231	0.029285	1.5764E-05	0.85095	0.00045807	538.3033212162826	27.429	0.18791	27.429	27.345	27.533	0					14	6	3	0	0	0	0.28575	1	8430	8430		72.243	15.522	1	436350			15091	1085	9482	9525	15328	15328					0.057776909235599305
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.3038330078125	2	538.303321	1074.59209	0.23338	0.00012563	0.37963	0.00020436	0.61302	0.00032999	538.3034728865449	27.7	0.35223	27.7	27.572	27.924	0					17	8	3	0	0	0	0.00095468	1	9692	9692		150.81	68.57	1	2429900			15092	1085	9482	9525	15329	15329					0.057776909235599305
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3046264648438	2	538.303321	1074.59209	-0.25041	-0.00013479	1.0422	0.00056101	0.79177	0.00042621	538.3039050322452	27.443	0.20496	27.443	27.356	27.561	0					19	7	3	0	0	0	0.11546	1	8728	8728		86.882	24.774	1	506600			15093	1085	9482	9525	15330	15330					0.057776909235599305
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3037719726562	2	538.303321	1074.59209	1.9098	0.0010281	-1.1502	-0.00061917	0.7596	0.0004089	538.3026952795054	27.656	0.40986	27.656	27.554	27.964	0					17	8	3	0	0	0	0.00095468	1	10055	10055		150.81	81.183	1	2253100			15094	1085	9482	9525	15331	15331					0.057776909235599305
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.304443359375	2	538.303321	1074.59209	1.0099	0.00054362	0.14553	7.8342E-05	1.1554	0.00062196	538.3034510380149	27.497	0.13507	27.497	27.414	27.549	0					6	3	2	0	0	0	0.060509	1	8995	8995		102.06	8.8661	1	219800			15095	1085	9482	9525	15332	15332					0.057776909235599305
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3043823242188	2	538.303321	1074.59209	-1.4532	-0.00078226	2.736	0.0014728	1.2828	0.00069052	538.3047892092858	27.491	0.25445	27.491	27.361	27.616	0					12	6	3	0	0	0	0.072845	1	8986	8986		107.45	35.577	1	474780			15096	1085	9482	9525	15333	15333					0.057776909235599305
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3040161132812	2	538.303321	1074.59209	2.0212	0.001088	-1.6407	-0.00088321	0.38046	0.00020481	538.3025643094755	27.654	0.27038	27.654	27.543	27.813	0					13	5	3	0	0	0	0.03035	1	9908	9908		128.35	29.719	1	1245500			15097	1085	9482	9525	15334	15334					0.057776909235599305
GTVIVDSTVGK	11	Unmodified	_GTVIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3037719726562	2	538.303321	1074.59209	3.3754	0.001817	-2.6358	-0.0014189	0.73964	0.00039815	538.3019973930022	27.636	0.47247	27.636	27.373	27.846	0					22	9	4	0	0	0	0.00095468	1	9900	9900		150.81	75.767	1	3474700			15098	1085	9482	9525	15335	15335					0.057776909235599305
GTVKAASGFNA	11	Unmodified	_GTVKAASGFNA_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2699584960938	2	511.766906	1021.51926	1.0382	0.00053133	-0.58339	-0.00029856	0.45484	0.00023277	511.7666484354882	38.98	0.69187	38.98	38.687	39.378	0					77	25	5	0	0	0	0.68382	1	14741	14741		29.17	2.4771	1	679450			15099	7410	9483	9526	15336	15336					0.009359819208043518
GTVKPNANR	9	Unmodified	_GTVKPNANR_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3;ENST00000556263.1_1_14:55605083-55607082:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7670593261719	2	478.76724	955.519927	-0.65915	-0.00031558	0.32877	0.0001574	-0.33038	-0.00015818	478.7674939050467	13.168	0.39052	13.168	13.063	13.453	0					21	8	4	0	0	0	0.0061615	1	2977	2977		153.04	32.415	1	8552700			15100	3754	9484	9527	15337	15337					0.04038821360506972
GTVKTNLKF	9	Unmodified	_GTVKTNLKF_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.935	1	52.935	52.435	53.435	0								0	0	0	0.37821	1	19435	19435		18.262	0.79408	1		+		15101	13440	9485	9528	15338	15338					0.07810333339955378
GTVKVTFPSGP	11	Unmodified	_GTVKVTFPSGP_					0	0	0			REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.3004150390625	2	545.300581	1088.58661	1.1888	0.00064823	-0.54894	-0.00029934	0.63982	0.00034889	545.300126286647	33.312	0.32719	33.312	33.104	33.431	0					24	13	3	0	0	0	0.64626	1	10800	10800		32.751	0	1	165570	+		15102	14519	9486	9529	15339	15339					0.045860121317673475
GTVKVVVVDS	10	Unmodified	_GTVKVVVVDS_					0	0	0		nc|ENSG00000185379|O75771-3|RAD51D;nc|ENSG00000185379|O75771-4|RAD51D;nc|ENSG00000185379|O75771-5|RAD51D;ENSG00000185379|ENST00000345365|RAD51D;nc|ENSG00000185379|O75771-8|RAD51D;RAD51D|p.G242Wfs*85|1|0.3|ENSG00000185379|chr17:35103268-35103269|-/A|frameshift_variant	nc|ENSG00000185379|O75771-3|RAD51D	nc|ENSG00000185379|O75771-3|RAD51D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.86572265625	3	334.865847	1001.57571	-0.70266	-0.0002353	0.50778	0.00017004	-0.19488	-6.526E-05	334.866029524557	26.207	0.10133	26.207	26.137	26.238	0					5	3	2	0	0	0	0.70877	1	8200	8200		32.751	14.219	1	87628			15103	7077	9487	9530	15340	15340					0.07498609757476515
GTVLFEIAK	9	Unmodified	_GTVLFEIAK_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2869567871094	2	489.286943	976.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.52	1	41.52	41.02	42.02	0								0	0	0	0.29356	1	13786	13786		36.447	4.9169	1				15104	6585	9488	9531	15341	15341					0.07011528591374372
GTVLFEIAK	9	Unmodified	_GTVLFEIAK_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.286376953125	2	489.286943	976.559333	0.60912	0.00029804	-1.0824	-0.00052959	-0.47324	-0.00023155	489.2864142829574	41.713	0.272	41.713	41.607	41.879	0					20	11	2	0	0	0	0.035062	1	16383	16383		104.06	32.179	1	394380			15105	6585	9488	9531	15342	15342					0.07011528591374372
GTVLFEIAK	9	Unmodified	_GTVLFEIAK_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2876281738281	2	489.286943	976.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.485	1	41.485	40.985	41.985	0								0	0	0	0.14033	1	14618	14618		62.107	1.1355	1				15106	6585	9488	9531	15343	15343					0.07011528591374372
GTVLFEIAK	9	Unmodified	_GTVLFEIAK_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.286865234375	2	489.286943	976.559333	0.77721	0.00038028	-0.83819	-0.00041011	-0.060978	-2.9836E-05	489.2864952982198	41.662	0.27023	41.662	41.557	41.827	0					18	7	3	0	0	0	0.095583	1	16588	16588		80.455	12.961	1	209700			15107	6585	9488	9531	15344	15344					0.07011528591374372
GTVLHKNMNI	10	Unmodified	_GTVLHKNMNI_					0	0	0			REV__ENST00000484763.1_1_14:50582563-50582965:-|nuORF	REV__ENST00000484763.1_1_14:50582563-50582965:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.20489501953125	3	376.206098	1125.59646	-2.1241	-0.00079909	-0.58449	-0.00021989	-2.7086	-0.001019	376.2057171394155	25.247	0.36017	25.247	25.114	25.474	0					17	8	3	0	0	0	0.51121	1	7986	7986		56.434	17.68	1	300310	+		15108	19642	9489	9532	15345	15345					0.038688768654765227
GTVLVWRF	8	Unmodified	_GTVLVWRF_					0	0	0			REV__ENST00000526757.5_1_11:8715264-8715453:-|nuORF	REV__ENST00000526757.5_1_11:8715264-8715453:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.28228759765625	2	489.281995	976.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.414	1	41.414	40.914	41.914	0								0	0	0	1.7419	1	13277	13277		26.796	4.8362	1		+		15109	20002	9490	9533	15346	15346					0.060223853766501634
GTVLYSLVK	9	Unmodified	_GTVLYSLVK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.29364013671875	2	490.294768	978.574983	-0.47958	-0.00023513	-0.30343	-0.00014877	-0.78301	-0.0003839	490.2942371826831	39.554	0.13056	39.554	39.477	39.608	0					12	5	3	0	0	0	0.085655	1	15060	15060		82.75	4.4867	1	185870			15110	1705	9491	9534	15347	15347					0.084838151084341
GTVNRATEK	9	Unmodified	_GTVNRATEK_					0	0	0		ENSG00000250254|ENST00000504686|PTTG2;nc|ENSG00000250254|Q9NZH5|PTTG2;PTTG2|p.K84Nfs*10|1|0.19|ENSG00000250254|chr4:37960682-37960682|A/-|frameshift_variant;nc|ENSG00000213005|Q9NZH4|PTTG3P;ENST00000524244.5_1_5:159849319-159849927:+|nuORF;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENSG00000250254|ENST00000504686|PTTG2;ENST00000524244.5_1_5:159849319-159849927:+|nuORF	ENST00000524244.5_1_5:159849319-159849927:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2651062011719	2	488.26453	974.514508	-1.248	-0.00060934	2.1752	0.0010621	0.92719	0.00045271	488.2655066294276	12.545	0.077172	12.545	12.492	12.569	0					8	4	2	0	0	0	0.032181	1	2490	2490		106.88	16.51	1	112310			15111	5710;7987	9492	9535	15348	15348					0.026230977780414833
GTVNRATEK	9	Unmodified	_GTVNRATEK_					0	0	0		ENSG00000250254|ENST00000504686|PTTG2;nc|ENSG00000250254|Q9NZH5|PTTG2;PTTG2|p.K84Nfs*10|1|0.19|ENSG00000250254|chr4:37960682-37960682|A/-|frameshift_variant;nc|ENSG00000213005|Q9NZH4|PTTG3P;ENST00000524244.5_1_5:159849319-159849927:+|nuORF;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENSG00000250254|ENST00000504686|PTTG2;ENST00000524244.5_1_5:159849319-159849927:+|nuORF	ENST00000524244.5_1_5:159849319-159849927:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2646484375	2	488.26453	974.514508	-2.9092	-0.0014205	2.8927	0.0014124	-0.01649	-8.0513E-06	488.2660812550986	12.503	0.059679	12.503	12.46	12.52	0					5	3	2	0	0	0	0.098791	1	2429	2429		79.713	2.9384	1	51088			15112	5710;7987	9492	9535	15349	15349					0.026230977780414833
GTVNRATEK	9	Unmodified	_GTVNRATEK_					0	0	0		ENSG00000250254|ENST00000504686|PTTG2;nc|ENSG00000250254|Q9NZH5|PTTG2;PTTG2|p.K84Nfs*10|1|0.19|ENSG00000250254|chr4:37960682-37960682|A/-|frameshift_variant;nc|ENSG00000213005|Q9NZH4|PTTG3P;ENST00000524244.5_1_5:159849319-159849927:+|nuORF;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENSG00000250254|ENST00000504686|PTTG2;ENST00000524244.5_1_5:159849319-159849927:+|nuORF	ENST00000524244.5_1_5:159849319-159849927:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2642517089844	2	488.26453	974.514508	0.79447	0.00038791	-1.0087	-0.00049249	-0.21419	-0.00010458	488.26393857272467	12.782	0.28943	12.782	12.688	12.978	0					11	6	3	0	0	0	0.010427	1	2796	2796		140.11	9.0809	1	640760			15113	5710;7987	9492	9535	15350	15350					0.026230977780414833
GTVRIGVAK	9	Unmodified	_GTVRIGVAK_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7845153808594	2	450.784902	899.55525	-0.10465	-4.7175E-05	-0.46373	-0.00020904	-0.56837	-0.00025621	450.7846118182815	20.389	0.31556	20.389	20.28	20.595	0					14	6	4	0	0	0	0.04067	1	6585	6585		98.582	21.735	1	1739900			15114	2473	9493	9536	15351	15351					0.10145483888334184
GTVRIGVAK	9	Unmodified	_GTVRIGVAK_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7847900390625	2	450.784902	899.55525	0.46584	0.00020999	-0.064822	-2.9221E-05	0.40101	0.00018077	450.78472467522704	20.198	0.19599	20.198	20.1	20.296	0					7	4	3	0	0	0	0.27249	1	5643	5643		52.937	2.9122	1	149970			15115	2473	9493	9536	15352	15352					0.10145483888334184
GTVRIGVAK	9	Unmodified	_GTVRIGVAK_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7846984863281	2	450.784902	899.55525	-0.40414	-0.00018218	-0.13838	-6.2381E-05	-0.54253	-0.00024456	450.7848764384003	20.352	0.36856	20.352	20.143	20.511	0					15	7	4	0	0	0	0.02953	1	6459	6459		109.48	12.006	1	2218300			15116	2473	9493	9536	15353	15353					0.10145483888334184
GTVSATSPNK	10	Unmodified	_GTVSATSPNK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2509460449219	2	481.251089	960.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.555	1	15.555	15.055	16.055	0								0	0	0	0.35404	1	3573	3573		42.338	6.7198	1				15117	2404	9494	9537	15354	15354					0.005799891668516466
GTVSKVTGK	9	Unmodified	_GTVSKVTGK_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.7606506347656	2	438.761092	875.507631	0.26287	0.00011534	-1.0321	-0.00045284	-0.76923	-0.00033751	438.7605319613883	14.688	0.073296	14.688	14.652	14.726	0					4	2	2	0	0	0	0.11411	1	3076	3076		76.17	14.478	1	111000			15118	7375	9495	9538	15355	15355					0.06489784897485151
GTVSKVTGK	9	Unmodified	_GTVSKVTGK_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.7615966796875	2	438.761092	875.507631	0.31872	0.00013984	1.0462	0.00045902	1.3649	0.00059886	438.76130678443934	14.768	0.091511	14.768	14.696	14.788	0					5	3	2	0	0	0	0.17062	1	3191	3191		65.157	0	1	52195			15119	7375	9495	9538	15356	15356					0.06489784897485151
GTVSKVTGK	9	Unmodified	_GTVSKVTGK_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.7615051269531	2	438.761092	875.507631	-0.60117	-0.00026377	1.4377	0.0006308	0.83651	0.00036703	438.761828710268	14.767	0.11463	14.767	14.685	14.8	0					7	4	2	0	0	0	0.18505	1	3196	3196		63.426	11.899	1	90082			15120	7375	9495	9538	15357	15357					0.06489784897485151
GTVSKVTGK	9	Unmodified	_GTVSKVTGK_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.7607421875	2	438.761092	875.507631	-0.57616	-0.0002528	-0.036431	-1.5984E-05	-0.6126	-0.00026878	438.761081560815	14.919	0.16953	14.919	14.86	15.029	0					7	3	3	0	0	0	0.0030642	1	3832	3832		168.26	45.05	1	432320			15121	7375	9495	9538	15358	15358					0.06489784897485151
GTVSKVTGK	9	Unmodified	_GTVSKVTGK_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.76092529296875	2	438.761092	875.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.971	1	14.971	14.471	15.471	0								0	0	0	0.11159	1	3846	3846		68.846	3.3808	1				15122	7375	9495	9538	15359	15359					0.06489784897485151
GTVSPLFQK	9	Unmodified	_GTVSPLFQK_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7757568359375	2	488.776742	975.538931	-1.2498	-0.00061085	0.59957	0.00029306	-0.65019	-0.0003178	488.7770959601054	31.954	0.21226	31.954	31.909	32.121	0					11	8	2	0	0	0	0.44593	1	10631	10631		37.812	3.8899	1	82547			15123	5958	9496	9539	15360	15360					0.05018357931567152
GTVVGLVNK	9	Unmodified	_GTVVGLVNK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.7713317871094	2	443.77146	885.528367	-0.29212	-0.00012963	0.074073	3.2872E-05	-0.21804	-9.6762E-05	443.7715216964248	27.813	0.22596	27.813	27.708	27.934	0					13	7	3	0	0	0	0.021961	2	8609	8600;8609		118.74	22.92	1	359780			15124	241	9497	9540	15361;15362	15362					0.08102375277144347
GTVVGLVNK	9	Unmodified	_GTVVGLVNK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7713317871094	2	443.77146	885.528367	-0.3632	-0.00016118	0.44247	0.00019635	0.079266	3.5176E-05	443.7716902211577	28.116	0.45624	28.116	27.912	28.368	0					26	11	4	0	0	0	0.0025305	1	9886	9886		171.38	94.611	1	1770000			15125	241	9497	9540	15363	15363					0.08102375277144347
GTVVGLVNK	9	Unmodified	_GTVVGLVNK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7716064453125	2	443.77146	885.528367	-1.1595	-0.00051454	0.80454	0.00035703	-0.35493	-0.00015751	443.77185164437924	27.851	0.25736	27.851	27.735	27.992	0					16	9	3	0	0	0	0.15163	1	8905	8905		67.494	23.116	1	351250			15126	241	9497	9540	15364	15364					0.08102375277144347
GTVVGLVNK	9	Unmodified	_GTVVGLVNK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7712707519531	2	443.77146	885.528367	0.52985	0.00023513	-0.56312	-0.0002499	-0.033273	-1.4766E-05	443.77125028970215	28.088	0.34395	28.088	27.897	28.241	0					16	7	4	0	0	0	0.014688	1	10244	10244		131.03	40.255	1	1763700			15127	241	9497	9540	15365	15365					0.08102375277144347
GTVVGLVNK	9	Unmodified	_GTVVGLVNK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.7711181640625	2	443.77146	885.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.891	1	27.891	27.391	28.391	0								0	0	0	0.080575	1	9183	9183		77.318	25.018	1				15128	241	9497	9540	15366	15366					0.08102375277144347
GTVVGLVNK	9	Unmodified	_GTVVGLVNK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.77130126953125	2	443.77146	885.528367	0.77088	0.00034209	-0.65971	-0.00029276	0.11116	4.9332E-05	443.77118154428894	28.051	0.31425	28.051	27.846	28.16	0					10	6	2	0	0	0	0.098791	1	10131	10131		79.713	26.361	1	540090			15129	241	9497	9540	15367	15367					0.08102375277144347
GTVVNALGK	9	Unmodified	_GTVVNALGK_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.7554626464844	2	429.75581	857.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.585	1	25.585	25.085	26.085	0								0	0	0	0.3245	1	7976	7976		30.318	0.47618	1				15130	2916	9498	9541	15368	15368					0.06261802243045622
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7742309570312	2	514.7742	1027.53385	0.12577	6.4746E-05	-0.26207	-0.00013491	-0.1363	-7.0162E-05	514.773855079772	21.769	0.24208	21.769	21.673	21.915	0					12	7	2	0	0	0	0.017421	1	6039	6039		126.24	8.4315	1	282700			15131	939	9499	9542	15369	15369					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7742309570312	2	514.7742	1027.53385	0.024419	1.257E-05	0.15823	8.1453E-05	0.18265	9.4023E-05	514.774219707146	22.069	0.22452	22.069	21.984	22.209	0					9	5	2	0	0	0	0.0088974	1	7118	7118		143.37	7.1055	1	2111700			15132	939	9499	9542	15370	15370					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.51861572265625	3	343.518559	1027.53385	0.50636	0.00017394	-0.36325	-0.00012478	0.14311	4.9162E-05	343.51843793279716	22.069	0.18066	22.069	21.984	22.165	0					8	4	2	0	0	0	0.41113	1	7119	7119		47.96	25.38	1	585420			15133	939	9499	9542	15371	15371					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.77392578125	2	514.7742	1027.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.789	1	21.789	21.289	22.289	0								0	0	0	0.24544	1	6313	6313		44.377	11.565	1				15134	939	9499	9542	15372	15372					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7737426757812	2	514.7742	1027.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.993	1	21.993	21.493	22.493	0								0	0	0	0.0537	1	7378	7378		85.161	15.533	1				15135	939	9499	9542	15373	15373					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.774169921875	2	514.7742	1027.53385	-0.49048	-0.00025249	0.7725	0.00039767	0.28202	0.00014518	514.7746301657328	21.947	0.16357	21.947	21.89	22.054	0					6	3	2	0	0	0	0.037712	1	7365	7365		101.46	16.299	1	308310			15136	939	9499	9542	15374	15374					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7741088867188	2	514.7742	1027.53385	-1.5879	-0.00081742	0.72234	0.00037184	-0.86558	-0.00044558	514.77450041105	21.845	0.15108	21.845	21.749	21.9	0					6	3	2	0	0	0	0.35021	1	6417	6417		45.972	6.7194	1	289530			15137	939	9499	9542	15375	15375					0.021180540689329064
GTWIYSVNK	9	Unmodified	_GTWIYSVNK_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2798461914062	2	534.279649	1066.54475	0.15827	8.4562E-05	0.45235	0.00024168	0.61062	0.00032624	534.2797551285898	36.054	0.2414	36.054	35.969	36.211	0					15	6	3	0	0	0	0.013878	1	13572	13572		132.76	77.254	1	427170			15138	2144	9500	9543	15376	15376					0.014134564432424668
GTWRCKQQCLA	11	Unmodified	_GTWRCKQQCLA_					0	0	0			REV__PCOLCE2|p.R303W|1|0.16|ENSG00000163710|chr3:142823574-142823574|G/A|missense_variant	REV__PCOLCE2|p.R303W|1|0.16|ENSG00000163710|chr3:142823574-142823574|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.8786315917969	3	431.877875	1292.6118	0.75219	0.00032486	0.87003	0.00037575	1.6222	0.0007006	431.8784302535707	28.04	0.16938	28.04	27.965	28.135	0					9	4	3	0	0	0	0.73562	1	9882	9882		24.232	0	1	162700	+		15139	21350	9501	9544	15377	15377					-0.022805796089642172
GTWVLIPFL	9	Unmodified	_GTWVLIPFL_					0	0	0		ENST00000397269.7_1_10:5948371-5948467:+|nuORF	ENST00000397269.7_1_10:5948371-5948467:+|nuORF	ENST00000397269.7_1_10:5948371-5948467:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3051147460938	2	523.307678	1044.6008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.749	1	41.749	41.249	42.249	0								0	0	0	0.29985	1	16416	16416		35.201	3.6709	1				15140	9217	9502	9545	15378	15378					0.08028709350696772
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.28729248046875	2	505.287474	1008.5604	-0.07176	-3.626E-05	0.33961	0.0001716	0.26785	0.00013534	505.2875977465083	14.279	0.60694	14.279	14.196	14.803	0					67	26	5	0	0	0	0.012231	2	2902	2902;3036		136.27	58.951	1	14316000			15141	5328	9503	9546	15379;15380	15379					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	337.1939697265625	3	337.194075	1008.5604	0.23764	8.0132E-05	-0.19901	-6.7106E-05	0.038631	1.3026E-05	337.1940158388098	14.279	0.39035	14.279	14.196	14.587	0					36	17	5	0	0	0	0.57706	1	2903	2903		47.657	24.135	1	10666000			15142	5328	9503	9546	15381	15381					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2888488769531	2	505.287474	1008.5604	-0.048739	-2.4627E-05	0.97647	0.0004934	0.92773	0.00046877	505.2882788005375	14.575	2.1787	14.575	14.483	16.662	0					89	52	3	0	0	0	0.012231	1	3583	3583		136.27	56.817	1	53595000			15143	5328	9503	9546	15382	15382					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	337.19403076171875	3	337.194075	1008.5604	-0.67995	-0.00022928	0.46589	0.0001571	-0.21406	-7.2179E-05	337.1942655982539	14.254	0.20782	14.254	14.205	14.413	0					16	8	4	0	0	0	0.47038	1	3063	3063		60.118	28.484	1	1598800			15144	5328	9503	9546	15383	15383					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.287353515625	2	505.287474	1008.5604	-0.77312	-0.00039065	0.44435	0.00022452	-0.32877	-0.00016612	505.2877146153797	14.254	0.14149	14.254	14.221	14.363	0					8	4	3	0	0	0	0.056004	1	3064	3064		93.143	15.826	1	653320			15145	5328	9503	9546	15384	15384					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2873229980469	2	505.287474	1008.5604	-0.71055	-0.00035903	0.38676	0.00019543	-0.32379	-0.00016361	505.28771489892034	14.287	0.24724	14.287	14.216	14.463	0					18	10	2	0	0	0	0.023928	1	3055	3055		115.49	41.239	1	2081900			15146	5328	9503	9546	15385	15385					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.1941833496094	3	337.194075	1008.5604	1.486	0.00050107	-1.8488	-0.00062341	-0.36283	-0.00012234	337.19368475842606	14.544	0.64588	14.544	14.45	15.096	0					35	13	5	0	0	0	0.35045	1	3804	3804		62.107	12.571	1	33184000			15147	5328	9503	9546	15386	15386					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2876281738281	2	505.287474	1008.5604	-0.41245	-0.00020841	0.54916	0.00027748	0.1367	6.9075E-05	505.2877843395222	14.533	0.83702	14.533	14.437	15.274	0					40	17	5	0	0	0	0.016683	1	3795	3795		127.46	50.144	1	13507000			15148	5328	9503	9546	15387	15387					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.1941833496094	3	337.194075	1008.5604	0.53355	0.00017991	-0.47958	-0.00016171	0.053973	1.8199E-05	337.19397311296206	14.533	0.93668	14.533	14.48	15.417	0					35	19	4	0	0	0	0.39215	1	3796	3796		67.494	29.985	1	11882000			15149	5328	9503	9546	15388	15388					0.05645742960280131
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2821960449219	2	505.281857	1008.54916	0.71341	0.00036048	0.15029	7.5937E-05	0.8637	0.00043641	505.28199743229845	36.344	0.2446	36.344	36.267	36.512	0					25	12	3	0	0	0	0.035106	1	11910	11910		104.01	41.906	1	251520			15150	2840	9504	9547	15389	15389					0.045229208661680786
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.281982421875	2	505.281857	1008.54916	0.80454	0.00040652	-0.82545	-0.00041709	-0.02091	-1.0565E-05	505.28139935588666	36.639	0.56237	36.639	36.351	36.913	0					35	15	3	0	0	0	0.011389	1	13810	13810		138.06	36.462	1	2240700			15151	2840	9504	9547	15390	15390					0.045229208661680786
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2818603515625	2	505.281857	1008.54916	1.058	0.00053458	-0.89759	-0.00045353	0.16041	8.105E-05	505.2813347349207	36.603	0.54558	36.603	36.455	37	0					30	16	3	0	0	0	0.017421	1	14254	14254		126.24	35.873	1	3099100			15152	2840	9504	9547	15391	15391					0.045229208661680786
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.28204345703125	2	505.281857	1008.54916	0.10163	5.1353E-05	0.70332	0.00035537	0.80495	0.00040673	505.2820542159445	36.395	0.17162	36.395	36.321	36.493	0					9	7	2	0	0	0	0.063171	1	13027	13027		90.601	35.825	1	76167			15153	2840	9504	9547	15392	15392					0.045229208661680786
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2816162109375	2	505.281857	1008.54916	0.1107	5.5935E-05	0.085961	4.3435E-05	0.19666	9.937E-05	505.2818072277241	36.384	0.24799	36.384	36.295	36.543	0					26	11	3	0	0	0	0.12834	1	13015	13015		72.879	18.103	1	350680			15154	2840	9504	9547	15393	15393					0.045229208661680786
GTYEKAKQK	9	Unmodified	_GTYEKAKQK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7898559570312	2	526.790381	1051.56621	0.10195	5.3704E-05	0.00060324	3.1778E-07	0.10255	5.4022E-05	526.7904877791956	11.239	0.07109	11.239	11.204	11.275	0					7	4	2	0	0	0	0.063171	1	2149	2149		90.601	10.888	1	147580			15155	6773	9505	9548	15394	15394					0.04248841471940068
GTYEKAKQK	9	Unmodified	_GTYEKAKQK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.791748046875	2	526.790381	1051.56621	1.7609	0.00092765	-0.054786	-2.8861E-05	1.7062	0.00089879	526.79055845688	11.305	0.080816	11.305	11.265	11.346	0					8	3	3	0	0	0	0.035062	1	2284	2284		104.06	10.861	1	109480			15156	6773	9505	9548	15395	15395					0.04248841471940068
GTYEKAKQK	9	Unmodified	_GTYEKAKQK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7906494140625	2	526.790381	1051.56621	0.25973	0.00013683	0.85986	0.00045296	1.1196	0.00058979	526.7906448961434	11.304	0.076009	11.304	11.26	11.336	0					6	3	2	0	0	0	0.04067	1	2277	2277		98.582	34.375	1	146220			15157	6773	9505	9548	15396	15396					0.04248841471940068
GTYGLDSVKK	10	Unmodified	_GTYGLDSVKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.29052734375	2	534.290214	1066.56587	0.51977	0.00027771	0.023908	1.2774E-05	0.54368	0.00029048	534.290191770273	23.688	0.19151	23.688	23.615	23.807	0					13	6	3	0	0	0	0.45669	1	6878	6878		50.034	14.881	1	312380			15158	1766	9506	9549	15397	15397					0.03525421752101465
GTYGLDSVKK	10	Unmodified	_GTYGLDSVKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.29052734375	2	534.290214	1066.56587	0.1587	8.479E-05	0.49455	0.00026424	0.65325	0.00034903	534.2904451567297	23.957	0.2269	23.957	23.863	24.09	0					13	5	4	0	0	0	0.065778	1	8009	8009		104.01	32.718	1	2254700			15159	1766	9506	9549	15398	15398					0.03525421752101465
GTYGLDSVKK	10	Unmodified	_GTYGLDSVKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2904052734375	2	534.290214	1066.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.74	1	23.74	23.24	24.24	0								0	0	0	0.328	1	7174	7174		46.457	12.284	1				15160	1766	9506	9549	15399	15399					0.03525421752101465
GTYGLDSVKK	10	Unmodified	_GTYGLDSVKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2904052734375	2	534.290214	1066.56587	0.29038	0.00015515	0.53192	0.0002842	0.8223	0.00043935	534.2904404685855	23.939	0.21556	23.939	23.83	24.045	0					10	4	3	0	0	0	0.11048	1	8301	8301		93.598	34.816	1	776180			15161	1766	9506	9549	15400	15400					0.03525421752101465
GTYGLDSVKK	10	Unmodified	_GTYGLDSVKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	356.5291748046875	3	356.529235	1066.56587	0.42444	0.00015133	-0.46515	-0.00016584	-0.04071	-1.4514E-05	356.52906001232986	23.759	0.092596	23.759	23.685	23.777	0					4	2	2	0	0	0	0.55603	1	7299	7299		43.651	27.644	1	70930			15162	1766	9506	9549	15401	15401					0.03525421752101465
GTYGLDSVKK	10	Unmodified	_GTYGLDSVKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.5291442871094	3	356.529235	1066.56587	-0.058067	-2.0703E-05	0.060288	2.1494E-05	0.0022206	7.9171E-07	356.52922193675147	23.889	0.21642	23.889	23.78	23.996	0					7	4	2	0	0	0	0.46215	1	8174	8174		53.089	22.021	1	617690			15163	1766	9506	9549	15402	15402					0.03525421752101465
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.22723388671875	3	399.227556	1194.66084	0.59521	0.00023763	-0.70805	-0.00028267	-0.11284	-4.5047E-05	399.227108384523	20.347	0.078932	20.347	20.31	20.389	0					6	2	3	0	0	0	0.69983	1	5438	5438		27.644	4.266	1	239750			15164	1766	9507	9550	15403	15403					0.0712935522326461
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	598.3382568359375	2	598.337695	1194.66084	0.13738	8.22E-05	0.48243	0.00028865	0.61981	0.00037085	598.3379674783855	20.342	0.13093	20.342	20.302	20.433	0					6	4	2	0	0	0	0.34891	1	5431	5431		47.96	2.0076	1	117130			15165	1766	9507	9550	15404	15404					0.0712935522326461
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	598.3377075195312	2	598.337695	1194.66084	-0.010655	-6.3755E-06	0.43226	0.00025864	0.42161	0.00025226	598.3379217992092	20.693	0.15364	20.693	20.594	20.748	0					6	3	2	0	0	0	0.0085981	1	6453	6453		120.31	65.53	1	788770			15166	1766	9507	9550	15405	15405					0.0712935522326461
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	598.3384399414062	2	598.337695	1194.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.409	1	20.409	19.909	20.909	0								0	0	0	0.30964	1	5694	5694		41.427	3.6151	1				15167	1766	9507	9550	15406	15406					0.0712935522326461
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.3377075195312	2	598.337695	1194.66084	0.16785	0.00010043	-0.18453	-0.00011041	-0.016677	-9.9785E-06	598.3375749133469	20.604	0.21736	20.604	20.495	20.713	0					7	4	2	0	0	0	0.10814	1	6689	6689		79.489	24.713	1	834410			15168	1766	9507	9550	15407	15407					0.0712935522326461
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.2274169921875	3	399.227556	1194.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.472	1	20.472	19.972	20.972	0								0	0	0	0.43372	1	5763	5763		29.551	7.865	1				15169	1766	9507	9550	15408	15408					0.0712935522326461
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.227294921875	3	399.227556	1194.66084	-0.1377	-5.4974E-05	-0.4111	-0.00016412	-0.5488	-0.0002191	399.22726560440793	20.457	0.17443	20.457	20.395	20.569	0					6	4	2	0	0	0	0.45905	1	5756	5756		47.228	14.188	1	128300			15170	1766	9507	9550	15409	15409					0.0712935522326461
GTYGLDSVKKK	11	Unmodified	_GTYGLDSVKKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.2275390625	3	399.227556	1194.66084	-0.61963	-0.00024737	0.34042	0.00013591	-0.2792	-0.00011146	399.2277178442577	20.6	0.21486	20.6	20.494	20.709	0					8	4	3	0	0	0	0.6208	1	6560	6560		35.178	3.6484	1	1430600			15171	1766	9507	9550	15410	15410					0.0712935522326461
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2527770996094	2	504.252577	1006.4906	0.6476	0.00032655	-0.91958	-0.0004637	-0.27198	-0.00013715	504.2522940296186	22.544	0.19801	22.544	22.47	22.668	0					17	6	4	0	0	0	0.11898	1	6381	6381		75.043	75.043	1	566260			15172	3917	9508	9551	15411	15411					-0.012384589799694368
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2524719238281	2	504.252577	1006.4906	0.77309	0.00038983	-1.1745	-0.00059222	-0.40136	-0.00020239	504.2521392658628	22.893	0.37911	22.893	22.766	23.145	0					25	9	4	0	0	0	0.048471	1	7491	7491		95.815	8.0609	1	4217400			15173	3917	9508	9551	15412	15412					-0.012384589799694368
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.25238037109375	2	504.252577	1006.4906	-0.83	-0.00041853	0.37029	0.00018672	-0.45971	-0.00023181	504.2529904711742	22.599	0.29646	22.599	22.505	22.801	0					20	10	4	0	0	0	0.048471	1	6668	6668		95.815	20.772	1	682920			15174	3917	9508	9551	15413	15413					-0.012384589799694368
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.25250244140625	2	504.252577	1006.4906	1.0311	0.00051994	-1.5695	-0.00079142	-0.53838	-0.00027148	504.25191774940197	22.802	0.26716	22.802	22.693	22.961	0					17	5	5	0	0	0	0.11898	1	7756	7756		75.043	2.1641	1	3342400			15175	3917	9508	9551	15414	15414					-0.012384589799694368
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2529296875	2	504.252577	1006.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.692	1	22.692	22.192	23.192	0								0	0	0	0.072369	1	6803	6803		79.713	24.936	1				15176	3917	9508	9551	15415	15415					-0.012384589799694368
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.25262451171875	2	504.252577	1006.4906	0.11923	6.0123E-05	-0.29291	-0.0001477	-0.17368	-8.7578E-05	504.2526591465469	22.656	0.32243	22.656	22.56	22.883	0					16	7	4	0	0	0	0.048471	1	6795	6795		95.815	21.56	1	591310			15177	3917	9508	9551	15416	15416					-0.012384589799694368
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.25201416015625	2	504.252577	1006.4906	-2.0182	-0.0010177	1.9584	0.00098752	-0.059775	-3.0142E-05	504.25352659856856	22.69	0.18872	22.69	22.592	22.781	0					7	4	2	0	0	0	0.25716	1	6790	6790		54.776	3.5836	1	209160			15178	3917	9508	9551	15417	15417					-0.012384589799694368
GTYHGMTLK	9	Unmodified	_GTYHGMTLK_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2524108886719	2	504.252577	1006.4906	-0.38092	-0.00019208	-0.27393	-0.00013813	-0.65485	-0.00033021	504.2526005563716	22.797	0.36523	22.797	22.688	23.053	0					13	7	3	0	0	0	0.021961	1	7626	7626		118.74	36.503	1	1283200			15179	3917	9508	9551	15418	15418					-0.012384589799694368
GTYLLGILN	9	Unmodified	_GTYLLGILN_					0	0	0		ENST00000465804.5_1_3:149236734-149236857:-|nuORF	ENST00000465804.5_1_3:149236734-149236857:-|nuORF	ENST00000465804.5_1_3:149236734-149236857:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	321.8542175292969	3	321.855171	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.632	1	14.632	14.132	15.132	0								0	0	0	0.39567	1	3202	3202		13.454	4.7603	1				15180	9780	9509	9552	15419	15419					0.06091242074319325
GTYQDRLTK	9	Unmodified	_GTYQDRLTK_					0	0	0		nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30;ENST00000519879.1_1_8:118533115-118541135:+|nuORF	nc|ENSG00000164758|Q96HR3-2|MED30	nc|ENSG00000164758|Q96HR3-2|MED30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2853393554688	2	541.285463	1080.55637	1.0334	0.00055936	-0.82234	-0.00044512	0.21106	0.00011424	541.2846836848398	19.799	0.069744	19.799	19.759	19.829	0					4	2	2	0	0	0	0.10821	1	5196	5196		80.455	42.643	1	76465			15181	5729	9510	9553	15420	15420					0.01931653466544958
GTYQDRLTK	9	Unmodified	_GTYQDRLTK_					0	0	0		nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30;ENST00000519879.1_1_8:118533115-118541135:+|nuORF	nc|ENSG00000164758|Q96HR3-2|MED30	nc|ENSG00000164758|Q96HR3-2|MED30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2855224609375	2	541.285463	1080.55637	0.29015	0.00015705	0.58265	0.00031538	0.8728	0.00047244	541.285633094763	20.149	0.19113	20.149	20.05	20.241	0					11	4	4	0	0	0	0.19556	1	6209	6209		55.084	2.1472	1	617680			15182	5729	9510	9553	15421	15421					0.01931653466544958
GTYQDRLTK	9	Unmodified	_GTYQDRLTK_					0	0	0		nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30;ENST00000519879.1_1_8:118533115-118541135:+|nuORF	nc|ENSG00000164758|Q96HR3-2|MED30	nc|ENSG00000164758|Q96HR3-2|MED30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2860717773438	2	541.285463	1080.55637	0.079199	4.2869E-05	0.60068	0.00032514	0.67988	0.00036801	541.2856332933417	19.852	0.10169	19.852	19.779	19.881	0					6	3	2	0	0	0	0.38016	1	5437	5437		43.651	7.204	1	106500			15183	5729	9510	9553	15422	15422					0.01931653466544958
GTYQDRLTK	9	Unmodified	_GTYQDRLTK_					0	0	0		nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30;ENST00000519879.1_1_8:118533115-118541135:+|nuORF	nc|ENSG00000164758|Q96HR3-2|MED30	nc|ENSG00000164758|Q96HR3-2|MED30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.19244384765625	3	361.192734	1080.55637	0.29167	0.00010535	-0.57843	-0.00020893	-0.28676	-0.00010358	361.1924880378023	20.037	0.16872	20.037	19.927	20.096	0					5	3	2	0	0	0	0.36892	1	6423	6423		44.377	12.847	1	439460			15184	5729	9510	9553	15423	15423					0.01931653466544958
GTYQDRLTK	9	Unmodified	_GTYQDRLTK_					0	0	0		nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30;ENST00000519879.1_1_8:118533115-118541135:+|nuORF	nc|ENSG00000164758|Q96HR3-2|MED30	nc|ENSG00000164758|Q96HR3-2|MED30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2860107421875	2	541.285463	1080.55637	2.0119	0.001089	-1.0384	-0.00056207	0.97355	0.00052697	541.284861319747	20.02	0.16913	20.02	19.91	20.079	0					8	3	3	0	0	0	0.13173	1	6436	6436		65.157	17.5	1	1149400			15185	5729	9510	9553	15424	15424					0.01931653466544958
GTYQDRLTK	9	Unmodified	_GTYQDRLTK_					0	0	0		nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30;ENST00000519879.1_1_8:118533115-118541135:+|nuORF	nc|ENSG00000164758|Q96HR3-2|MED30	nc|ENSG00000164758|Q96HR3-2|MED30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2859497070312	2	541.285463	1080.55637	-1.4837	-0.00080311	1.7302	0.00093655	0.24651	0.00013343	541.2862966901314	19.91	0.19914	19.91	19.811	20.01	0					8	4	3	0	0	0	0.13907	1	5493	5493		72.879	18.103	1	126680			15186	5729	9510	9553	15425	15425					0.01931653466544958
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2728881835938	2	519.272355	1036.53016	1.4308	0.00074299	-0.57954	-0.00030094	0.85129	0.00044205	519.2720513270253	17.734	0.4816	17.734	17.662	18.143	0					23	13	4	0	0	0	0.032181	1	4279	4279		101.25	13.556	1	1829300			15187	2745	9511	9554	15426	15426					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2725219726562	2	519.272355	1036.53016	1.385	0.0007192	-1.0254	-0.00053247	0.3596	0.00018673	519.2717087255232	18.041	0.71235	18.041	17.942	18.655	0					34	16	5	0	0	0	0.046074	1	5193	5193		90.601	0	1	14681000			15188	2745	9511	9554	15427	15427					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2724609375	2	519.272355	1036.53016	0.18517	9.6154E-05	0.50161	0.00026047	0.68678	0.00035663	519.2725784341618	17.765	0.41492	17.765	17.657	18.072	0					25	11	5	0	0	0	0.011893	1	4510	4510		120.87	30.499	1	1963900			15189	2745	9511	9554	15428	15428					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2723388671875	2	519.272355	1036.53016	1.6272	0.00084498	-1.1566	-0.00060061	0.47062	0.00024438	519.2717319499257	17.996	0.4736	17.996	17.887	18.361	0					25	9	5	0	0	0	0.017741	1	5432	5432		120.87	21.493	1	17781000			15190	2745	9511	9554	15429	15429					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2727661132812	2	519.272355	1036.53016	0.97956	0.00050866	-0.50771	-0.00026364	0.47186	0.00024502	519.2720778419206	17.825	0.47191	17.825	17.737	18.209	0					19	10	4	0	0	0	0.052435	1	4518	4518		78.264	17.292	1	2568000			15191	2745	9511	9554	15430	15430					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	346.517333984375	3	346.517329	1036.53016	-0.067528	-2.34E-05	-0.17838	-6.1811E-05	-0.24591	-8.5211E-05	346.51728162603615	17.825	0.23182	17.825	17.737	17.969	0					9	5	3	0	0	0	0.22837	1	4521	4521		58.23	20.418	1	513320			15192	2745	9511	9554	15431	15431					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2728271484375	2	519.272355	1036.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.827	1	17.827	17.327	18.327	0								0	0	0	0.29421	1	4527	4527		44.377	13.874	1				15193	2745	9511	9554	15432	15432					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2723388671875	2	519.272355	1036.53016	1.604	0.00083292	-1.4859	-0.00077161	0.11807	6.1312E-05	519.2715676975254	18.018	0.80396	18.018	17.915	18.719	0					36	16	5	0	0	0	0.017741	1	5296	5296		132.76	25.75	1	13063000			15194	2745	9511	9554	15433	15433					0.01335384295066433
GTYSIGKEK	9	Unmodified	_GTYSIGKEK_					0	0	0		DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant;ENSG00000198924|ENST00000361384|DCLRE1A	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.76336669921875	2	491.763832	981.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.248	1	18.248	17.748	18.748	0								0	0	0	0.11963	1	4514	4514		66.962	7.0311	1				15195	751	9512	9555	15434	15434					0.02161463689287757
GTYSIGKEK	9	Unmodified	_GTYSIGKEK_					0	0	0		DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant;ENSG00000198924|ENST00000361384|DCLRE1A	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.7637023925781	2	491.763832	981.513111	-0.54335	-0.0002672	0.43406	0.00021345	-0.10929	-5.3747E-05	491.7640042272105	18.556	0.1391	18.556	18.461	18.6	0					8	3	3	0	0	0	0.076532	1	5458	5458		85.862	22.328	1	867470			15196	751	9512	9555	15435	15435					0.02161463689287757
GTYSIGKEK	9	Unmodified	_GTYSIGKEK_					0	0	0		DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant;ENSG00000198924|ENST00000361384|DCLRE1A	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.763671875	2	491.763832	981.513111	-1.4012	-0.00068904	0.78813	0.00038757	-0.61303	-0.00030147	491.7641801314053	18.257	0.088516	18.257	18.195	18.283	0					6	3	2	0	0	0	0.40353	1	4730	4730		41.427	1.3684	1	131560			15197	751	9512	9555	15436	15436					0.02161463689287757
GTYSIGKEK	9	Unmodified	_GTYSIGKEK_					0	0	0		DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant;ENSG00000198924|ENST00000361384|DCLRE1A	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	DCLRE1A|p.V898Wfs*37|1|0.34|ENSG00000198924|chr10:113841535-113841535|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7637939453125	2	491.763832	981.513111	-0.73361	-0.00036076	0.63253	0.00031105	-0.10108	-4.9707E-05	491.76414914159113	18.485	0.11715	18.485	18.427	18.544	0					4	2	2	0	0	0	0.11411	1	5691	5691		76.17	16.051	1	862880			15198	751	9512	9555	15437	15437					0.02161463689287757
GTYSKIMNH	9	Unmodified	_GTYSKIMNH_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7555541992188	2	525.755484	1049.49641	0.65448	0.00034409	-0.13587	-7.1434E-05	0.51861	0.00027266	525.7553483535038	21.873	0.1208	21.873	21.794	21.915	0					5	3	2	0	0	0	0.11898	1	6081	6081		75.043	25.019	1	179900			15199	1417	9513	9556	15438	15438					-0.026353604683208687
GTYSKIMNH	9	Unmodified	_GTYSKIMNH_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7557983398438	2	525.755484	1049.49641	0.45872	0.00024118	-0.022166	-1.1654E-05	0.43656	0.00022952	525.7551776186555	21.883	0.14678	21.883	21.803	21.949	0					7	4	2	0	0	0	0.47473	1	6346	6346		35.152	5.3105	1	140300			15200	1417	9513	9556	15439	15439					-0.026353604683208687
GTYSKIMNH	9	Unmodified	_GTYSKIMNH_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7557983398438	2	525.755484	1049.49641	0.18337	9.6407E-05	0.26702	0.00014039	0.45039	0.00023679	525.7557499809386	22.045	0.21545	22.045	21.989	22.204	0					6	4	2	0	0	0	0.010494	1	7416	7416		139.97	65.715	1	928480			15201	1417	9513	9556	15440	15440					-0.026353604683208687
GTYTIHAQK	9	Unmodified	_GTYTIHAQK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.76904296875	2	509.769448	1017.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.541	1	18.541	18.041	19.041	0								0	0	0	0.080575	1	4862	4862		77.318	11.514	1				15202	2223	9514	9557	15441	15441					0.01628285783431238
GTYTIHAQK	9	Unmodified	_GTYTIHAQK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.769287109375	2	509.769448	1017.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.76	1	18.76	18.26	19.26	0								0	0	0	0.0124	1	5813	5813		107.01	19.311	1				15203	2223	9514	9557	15442	15442					0.01628285783431238
GTYVGLTCK	9	Unmodified	_GTYVGLTCK_					0	0	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2408142089844	2	471.241678	940.468803	-0.0084831	-3.9976E-06	-0.79613	-0.00037517	-0.80461	-0.00037917	471.24115735698166	29.162	0.30115	29.162	29.068	29.369	0					19	11	2	0	0	0	0.085655	1	9170	9170		82.75	15.257	1	236710			15204	7848	9515	9558	15443	15443					-0.003812637285591336
GTYVGLTCK	9	Unmodified	_GTYVGLTCK_					0	0	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.24151611328125	2	471.241678	940.468803	0.17562	8.2759E-05	-0.99472	-0.00046875	-0.8191	-0.00038599	471.2412847862834	29.448	0.69817	29.448	29.324	30.022	0					36	17	4	0	0	0	0.037924	1	10509	10509		101.25	41.134	1	1345600			15205	7848	9515	9558	15444	15444					-0.003812637285591336
GTYVGLTCK	9	Unmodified	_GTYVGLTCK_					0	0	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2413330078125	2	471.241678	940.468803	0.59501	0.00028039	-1.5728	-0.00074116	-0.97778	-0.00046077	471.2409951072579	29.42	0.78606	29.42	29.321	30.107	0					34	16	4	0	0	0	0.19952	1	10904	10904		61.691	10.499	1	1498900			15206	7848	9515	9558	15445	15445					-0.003812637285591336
GTYVGLTCK	9	Unmodified	_GTYVGLTCK_					0	0	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2410888671875	2	471.241678	940.468803	-0.58634	-0.00027631	-0.33132	-0.00015613	-0.91767	-0.00043244	471.2416401824186	29.23	0.33156	29.23	29.141	29.472	0					17	8	3	0	0	0	0.19952	1	9790	9790		61.691	5.2575	1	181150			15207	7848	9515	9558	15446	15446					-0.003812637285591336
GTYVGLTCK	9	Unmodified	_GTYVGLTCK_					0	0	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.241455078125	2	471.241678	940.468803	-0.55238	-0.0002603	-0.18564	-8.748E-05	-0.73801	-0.00034778	471.2418099868798	29.366	0.55782	29.366	29.207	29.764	0					19	11	3	0	0	0	0.095583	1	10758	10758		80.455	20.336	1	436240			15208	7848	9515	9558	15447	15447					-0.003812637285591336
GTYVGLTCK	9	Carbamidomethyl (C)	_GTYVGLTC(Carbamidomethyl (C))K_	GTYVGLTC(1)K		GTYVGLTC(78)K		0	1	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.7520751953125	2	499.75241	997.490267	-0.04978	-2.4877E-05	-0.53723	-0.00026848	-0.58701	-0.00029336	499.7521050596064	26.94	0.20561	26.94	26.841	27.046	0					13	6	3	0	0	0	0.10506	1	8251	8251		78.264	11.302	1	330980			15209	7848	9515	9559	15448	15448	340				-0.008578786998441501
GTYVGLTCK	9	Carbamidomethyl (C)	_GTYVGLTC(Carbamidomethyl (C))K_	GTYVGLTC(1)K		GTYVGLTC(110)K		0	1	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7523193359375	2	499.75241	997.490267	-0.18289	-9.1398E-05	-0.23232	-0.0001161	-0.41521	-0.0002075	499.7523145518876	27.166	0.5018	27.166	26.999	27.501	0					31	12	4	0	0	0	0.032383	1	9461	9461		106.68	30.513	1	1777200			15210	7848	9515	9559	15449	15449	340				-0.008578786998441501
GTYVGLTCK	9	Carbamidomethyl (C)	_GTYVGLTC(Carbamidomethyl (C))K_	GTYVGLTC(1)K		GTYVGLTC(91)K		0	1	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7521667480469	2	499.75241	997.490267	-1.1653	-0.00058236	0.44975	0.00022476	-0.71555	-0.0003576	499.75261171682274	26.95	0.16158	26.95	26.855	27.017	0					8	5	2	0	0	0	0.063171	1	8514	8514		90.601	19.785	1	133850			15211	7848	9515	9559	15450	15450	340				-0.008578786998441501
GTYVGLTCK	9	Carbamidomethyl (C)	_GTYVGLTC(Carbamidomethyl (C))K_	GTYVGLTC(1)K		GTYVGLTC(78)K		0	1	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7522888183594	2	499.75241	997.490267	-0.63923	-0.00031945	0.49489	0.00024732	-0.14434	-7.2133E-05	499.7526380580459	27.195	0.26647	27.195	27.089	27.355	0					12	5	3	0	0	0	0.10506	1	9835	9835		78.264	11.302	1	905350			15212	7848	9515	9559	15451	15451	340				-0.008578786998441501
GTYVGLTCK	9	Carbamidomethyl (C)	_GTYVGLTC(Carbamidomethyl (C))K_	GTYVGLTC(1)K		GTYVGLTC(62)K		0	1	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.75213623046875	2	499.75241	997.490267	-2.1572	-0.0010781	1.8515	0.00092531	-0.30569	-0.00015277	499.75342714038584	26.972	0.15982	26.972	26.892	27.052	0					8	4	2	0	0	0	0.19952	1	8767	8767		61.691	10.164	1	238400			15213	7848	9515	9559	15452	15452	340				-0.008578786998441501
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.8142700195312	2	553.813856	1105.61316	1.4134	0.00078276	-0.10649	-5.8977E-05	1.3069	0.00072378	553.8138629802546	20.109	0.11065	20.109	20.034	20.145	0					7	3	3	0	0	0	0.073361	1	5334	5334		101.46	50.124	1	125980			15214	5411	9516	9560	15453	15453					0.06457701023077789
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8145751953125	2	553.813856	1105.61316	0.18199	0.00010079	0.72561	0.00040185	0.9076	0.00050264	553.8142569591847	20.157	0.16327	20.157	20.085	20.248	0					10	5	3	0	0	0	0.03454	1	5579	5579		114.89	27.14	1	363950			15215	5411	9516	9560	15454	15454					0.06457701023077789
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8140869140625	2	553.813856	1105.61316	1.6238	0.00089927	-1.296	-0.00071773	0.3278	0.00018154	553.8131411979584	20.372	0.21556	20.372	20.263	20.478	0					13	4	4	0	0	0	0.041742	1	6602	6602		112.11	51.135	1	1980200			15216	5411	9516	9560	15455	15455					0.06457701023077789
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.81396484375	2	553.813856	1105.61316	-1.1728	-0.00064949	1.5737	0.00087156	0.40098	0.00022207	553.8147984341402	20.215	0.14811	20.215	20.117	20.265	0					5	3	2	0	0	0	0.022799	1	5633	5633		123.21	68.432	1	128840			15217	5411	9516	9560	15456	15456					0.06457701023077789
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2568359375	2	483.256174	964.497795	0.031949	1.544E-05	-1.322	-0.00063886	-1.29	-0.00062342	483.25561254923485	25.154	0.18553	25.154	25.052	25.238	0					16	5	4	0	0	0	0.10915	1	7515	7515		77.318	18.536	1	368520			15218	7685	9517	9561	15457	15457					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.255859375	2	483.256174	964.497795	0.057226	2.7655E-05	-0.54235	-0.00026209	-0.48512	-0.00023444	483.2558949348098	25.15	0.57196	25.15	25.014	25.586	0					50	19	4	0	0	0	0.01873	1	7519	7519		124.08	44.368	1	2876600			15219	7685	9517	9561	15458	15458					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.25592041015625	2	483.256174	964.497795	0.60279	0.0002913	-1.2206	-0.00058986	-0.6178	-0.00029856	483.25535293810464	25.399	0.49289	25.399	25.102	25.595	0					38	11	6	0	0	0	0.020674	1	8674	8674		120.87	51.241	1	2265700			15220	7685	9517	9561	15459	15459					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2560119628906	2	483.256174	964.497795	-0.15184	-7.3376E-05	-0.077952	-3.7671E-05	-0.22979	-0.00011105	483.2560589474452	25.412	0.81584	25.412	25.226	26.042	0					51	17	5	0	0	0	0.020674	1	8665	8665		120.87	41.156	1	15791000			15221	7685	9517	9561	15460	15460					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.25579833984375	2	483.256174	964.497795	-1.2775	-0.00061738	0.87162	0.00042121	-0.40592	-0.00019616	483.25659661702565	25.192	0.59884	25.192	25.03	25.629	0					58	20	4	0	0	0	0.0049871	1	7782	7782		158.07	67.705	1	8755900			15222	7685	9517	9561	15461	15461					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.25592041015625	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.197	1	25.197	24.697	25.697	0								0	0	0	0.28666	1	7807	7807		37.812	3.639	1				15223	7685	9517	9561	15462	15462					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2561950683594	2	483.256174	964.497795	0.67868	0.00032798	-0.82081	-0.00039666	-0.14212	-6.8682E-05	483.25581039513224	25.401	0.99237	25.401	25.239	26.232	0					46	18	4	0	0	0	0.013878	1	8999	8999		132.76	53.045	1	31178000			15224	7685	9517	9561	15463	15463					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2560119628906	2	483.256174	964.497795	-0.27173	-0.00013131	-0.017277	-8.3492E-06	-0.289	-0.00013966	483.2561331778366	25.256	0.57586	25.256	25.128	25.703	0					35	14	5	0	0	0	0.020674	1	7992	7992		120.87	41.156	1	3843600			15225	7685	9517	9561	15464	15464					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.25592041015625	2	483.256174	964.497795	0.87959	0.00042507	-0.54323	-0.00026252	0.33637	0.00016255	483.25610463066346	25.355	1.6542	25.355	24.899	26.553	0					74	31	6	0	0	0	0.0080613	1	8852	8852		145.16	51.96	1	32689000			15226	7685	9517	9561	15465	15465					0.01412596892100737
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.31561279296875	2	486.316035	970.617516	-0.2946	-0.00014327	0.021847	1.0624E-05	-0.27275	-0.00013264	486.3159833726984	22.379	0.44371	22.379	22.282	22.726	0					28	10	4	0	0	0	0.011893	1	7247	7247		132.76	25.75	1	9983700			15227	3332	9518	9562	15466	15466					0.13103210236658924
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.3157958984375	2	486.316035	970.617516	-0.68772	-0.00033445	0.07088	3.447E-05	-0.61684	-0.00029998	486.3160122191928	22.245	0.16244	22.245	22.187	22.35	0					7	3	3	0	0	0	0.024312	1	7510	7510		120.87	19.616	1	1057700			15228	3332	9518	9562	15467	15467					0.13103210236658924
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	324.54632568359375	3	324.546449	970.617516	-0.024325	-7.8947E-06	-0.014211	-4.6121E-06	-0.038536	-1.2507E-05	324.54636989468094	22.119	0.27109	22.119	22.033	22.304	0					11	6	3	0	0	0	0.27249	1	6543	6543		52.937	5.2794	1	903690			15229	3332	9518	9562	15468	15468					0.13103210236658924
GVAELGVT	8	Unmodified	_GVAELGVT_					0	0	0		ENSG00000105058|ENST00000263384|FAM32A;ENST00000589852.5_1_19:16296199-16296328:+|nuORF;nc|ENSG00000105058|Q9Y421-2|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.5438232421875	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.996	1	54.996	54.496	55.496	0								0	0	0	1.7419	1	20897	20897		37.028	0	1				15230	2327	9519	9563	15469	15469					0.019344490519983992
GVAELGVTK	9	Unmodified	_GVAELGVTK_					0	0	0		ENSG00000105058|ENST00000263384|FAM32A;ENST00000589852.5_1_19:16296199-16296328:+|nuORF;nc|ENSG00000105058|Q9Y421-2|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.25567626953125	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.542	1	26.542	26.042	27.042	0								0	0	0	0.16453	1	8360	8360		56.434	6.9922	1				15231	2327	9520	9564	15470	15470					0.05538382523184282
GVAELGVTK	9	Unmodified	_GVAELGVTK_					0	0	0		ENSG00000105058|ENST00000263384|FAM32A;ENST00000589852.5_1_19:16296199-16296328:+|nuORF;nc|ENSG00000105058|Q9Y421-2|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.25543212890625	2	437.255643	872.496732	0.73044	0.00031939	-0.98871	-0.00043232	-0.25827	-0.00011293	437.2552787492726	26.769	0.41132	26.769	26.661	27.072	0					14	8	2	0	0	0	0.085655	1	9636	9636		82.75	22.632	1	427810			15232	2327	9520	9564	15471	15471					0.05538382523184282
GVAELGVTK	9	Unmodified	_GVAELGVTK_					0	0	0		ENSG00000105058|ENST00000263384|FAM32A;ENST00000589852.5_1_19:16296199-16296328:+|nuORF;nc|ENSG00000105058|Q9Y421-2|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2554931640625	2	437.255643	872.496732	0.72221	0.00031579	-1.0414	-0.00045535	-0.31918	-0.00013956	437.255237835059	26.696	0.46609	26.696	26.587	27.053	0					14	9	2	0	0	0	0.12834	1	9478	9478		72.879	8.672	1	416360			15233	2327	9520	9564	15472	15472					0.05538382523184282
GVAELLRQNQ	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GVAELLRQNQ_					1	0	0			REV__ARHGEF15|p.R820H|1|0.47|ENSG00000198844|chr17:8320926-8320926|G/A|missense_variant	REV__ARHGEF15|p.R820H|1|0.47|ENSG00000198844|chr17:8320926-8320926|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3193359375	2	585.317294	1168.62004	3.2104	0.0018791	0.49067	0.0002872	3.7011	0.0021663	585.3175668770576	23.709	0.56166	23.709	23.301	23.863	0					22	11	2	0	0	0	0.43008	1	8089	8089		52.937	52.937	1	875300	+		15234	12212	9521	9565	15473	15473					0.04247013903682273
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-3|MICAL3	nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2847900390625	2	512.284734	1022.55492	-0.10136	-5.1923E-05	0.26178	0.0001341	0.16042	8.2181E-05	512.2848566845643	40.956	0.42503	40.956	40.809	41.234	0					52	20	4	0	0	0	0.0072873	1	13163	13163		148.21	71.359	1	1049200			15235	3873;7951;11786	9522	9566	15474	15474					0.04454064168464811
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-3|MICAL3	nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.284912109375	2	512.284734	1022.55492	0.0058972	3.0211E-06	0.13042	6.6813E-05	0.13632	6.9834E-05	512.2847649756873	41.247	0.62094	41.247	41.115	41.736	0					93	30	5	0	0	0	0.021468	2	15662	15662;15785		119.56	61.746	1	7157900			15236	3873;7951;11786	9522	9566	15475;15476	15475					0.04454064168464811
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-3|MICAL3	nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2855224609375	2	512.284734	1022.55492	-0.14915	-7.6408E-05	0.26664	0.00013659	0.11748	6.0185E-05	512.2849045243119	41.043	0.34919	41.043	40.953	41.302	0					42	20	3	0	0	0	0.1236	1	13661	13661		73.975	42.02	1	590460			15237	3873;7951;11786	9522	9566	15477	15477					0.04454064168464811
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-3|MICAL3	nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2845458984375	2	512.284734	1022.55492	1.2523	0.00064153	-0.61447	-0.00031478	0.63781	0.00032674	512.2842649575006	41.238	0.24157	41.238	41.128	41.369	0					23	10	3	0	0	0	0.16524	1	16207	16207		65.803	23.329	1	275000			15238	3873;7951;11786	9522	9566	15478	15478					0.04454064168464811
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-3|MICAL3	nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2846069335938	2	512.284734	1022.55492	-0.45296	-0.00023204	0.5227	0.00026777	0.069745	3.5729E-05	512.2849182015211	41.217	0.51022	41.217	41.12	41.631	0					59	21	3	0	0	0	0.013544	2	16190	16190;16322		133.47	76.748	1	3038900			15239	3873;7951;11786	9522	9566	15479;15480	15479					0.04454064168464811
GVAFLLQLR	9	Unmodified	_GVAFLLQLR_					0	0	0		ENST00000515662.6_1_3:9404841-9404982:+|nuORF	ENST00000515662.6_1_3:9404841-9404982:+|nuORF	ENST00000515662.6_1_3:9404841-9404982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.54754638671875	3	339.54656	1015.61785	3.0198	0.0010254	-0.35701	-0.00012122	2.6628	0.00090416	339.54652486296186	32.093	0.72167	32.093	31.885	32.607	0					38	14	4	0	0	0	0.5654	1	12052	12052		49.442	10.189	1	3538500			15240	10266	9523	9567	15481	15481					0.11066629956519591
GVAGAVAVFPK	11	Unmodified	_GVAGAVAVFPK_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2996520996094	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.998	1	35.998	35.498	36.498	0								0	0	0	0.33523	1	13990	13990		54.776	35.416	1				15241	5530	9524	9568	15482	15482					0.07950637202566213
GVAGGSILK	9	Unmodified	_GVAGGSILK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.2451477050781	2	401.245078	800.475603	0.60277	0.00024186	-0.76002	-0.00030496	-0.15725	-6.3095E-05	401.24472402429234	26.064	0.31608	26.064	25.948	26.264	0					21	11	3	0	0	0	0.12239	1	7870	7870		74.255	5.4682	1	722100			15242	3666	9525	9569	15483	15483					0.06738417214330639
GVAGGSILK	9	Unmodified	_GVAGGSILK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2450866699219	2	401.245078	800.475603	-0.39676	-0.0001592	0.27943	0.00011212	-0.11733	-4.7078E-05	401.2451643862476	26.365	0.4366	26.365	26.235	26.671	0					27	10	4	0	0	0	0.025517	1	9070	9070		113.41	17.221	1	6236100			15243	3666	9525	9569	15484	15484					0.06738417214330639
GVAGGSILK	9	Unmodified	_GVAGGSILK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.24517822265625	2	401.245078	800.475603	-0.1284	-5.1521E-05	0.01125	4.5141E-06	-0.11715	-4.7007E-05	401.2450990500639	26.125	0.35456	26.125	26.041	26.396	0					16	8	3	0	0	0	0.019882	1	8375	8375		122.18	17.429	1	872750			15244	3666	9525	9569	15485	15485					0.06738417214330639
GVAGSGLLK	9	Unmodified	_GVAGSGLLK_					0	0	0		ENST00000519352.1_1_8:66545221-66546356:-|nuORF;ENST00000276569.7_1_8:66539639-66546356:-|nuORF	ENST00000519352.1_1_8:66545221-66546356:-|nuORF	ENST00000519352.1_1_8:66545221-66546356:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.2452697753906	2	401.245078	800.475603	-0.095283	-3.8232E-05	-0.20009	-8.0286E-05	-0.29538	-0.00011852	401.24499496692823	26.059	0.24686	26.059	25.972	26.219	0					25	9	3	0	0	0	0.12239	1	7854	7854		74.255	7.8258	1	1125300			15245	8397	9526	9570	15486	15486					0.06738417214330639
GVAGSGLLK	9	Unmodified	_GVAGSGLLK_					0	0	0		ENST00000519352.1_1_8:66545221-66546356:-|nuORF;ENST00000276569.7_1_8:66539639-66546356:-|nuORF	ENST00000519352.1_1_8:66545221-66546356:-|nuORF	ENST00000519352.1_1_8:66545221-66546356:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.2449645996094	2	401.245078	800.475603	0.41702	0.00016733	-0.7394	-0.00029668	-0.32238	-0.00012935	401.2448038757006	26.35	0.21166	26.35	26.249	26.46	0					6	4	2	0	0	0	0.30951	1	9430	9430		49.442	0	1	247710			15246	8397	9526	9570	15487	15487					0.06738417214330639
GVAKAFKE	8	Unmodified	_GVAKAFKE_					0	0	0			REV__RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant	REV__RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2449645996094	2	425.245078	848.475603	-0.027578	-1.1727E-05	0.12889	5.4811E-05	0.10132	4.3084E-05	425.24502123136153	25.781	0.1022	25.781	25.687	25.789	0					4	2	2	0	0	0	0.41952	1	8243	8243		68.485	9.7027	1	56723	+		15247	15041	9527	9571	15488	15488					0.04530417214334648
GVAKIIISK	9	Unmodified	_GVAKIIISK_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.81280517578125	2	464.813128	927.611703	0.083156	3.8652E-05	-0.51344	-0.00023866	-0.43029	-0.0002	464.8129780922832	24.774	0.1233	24.774	24.684	24.808	0					6	3	2	0	0	0	0.12834	1	7350	7350		72.879	10.772	1	40835			15248	3427	9528	9572	15489	15489					0.14500111724998987
GVAKIIISK	9	Unmodified	_GVAKIIISK_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.8128356933594	2	464.813128	927.611703	-0.13943	-6.4808E-05	-0.62976	-0.00029272	-0.76919	-0.00035753	464.8129103289947	25.016	0.21504	25.016	24.907	25.122	0					8	4	2	0	0	0	0.13726	1	8836	8836		70.816	1.1886	1	369190			15249	3427	9528	9572	15490	15490					0.14500111724998987
GVAKIIISK	9	Unmodified	_GVAKIIISK_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.8124084472656	2	464.813128	927.611703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.91	1	24.91	24.41	25.41	0								0	0	0	0.29356	1	7841	7841		36.447	4.9169	1				15250	3427	9528	9572	15491	15491					0.14500111724998987
GVALALRKK	9	Unmodified	_GVALALRKK_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.3240051269531	2	478.324194	954.633835	-0.047015	-2.2488E-05	-0.34207	-0.00016362	-0.38908	-0.00018611	478.32388341185924	19.522	0.1107	19.522	19.455	19.566	0					7	3	3	0	0	0	0.2873	1	5056	5056		51.335	5.3835	1	94128			15251	1954	9529	9573	15492	15492					0.15470336193413914
GVALALRKK	9	Unmodified	_GVALALRKK_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.32403564453125	2	478.324194	954.633835	-0.27969	-0.00013378	-0.40456	-0.00019351	-0.68425	-0.00032729	478.3240150560449	19.856	0.14661	19.856	19.773	19.92	0					7	3	3	0	0	0	0.20551	1	6058	6058		60.972	2.19	1	564030			15252	1954	9529	9573	15493	15493					0.15470336193413914
GVALKVIHELA	11	Unmodified	_GVALKVIHELA_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;TOP2B|p.K421*|1|0.35|ENSG00000077097|chr3:25632451-25632452|-/A|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	nc|ENSG00000077097|Q02880-2|TOP2B;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.9043884277344	3	383.904524	1148.69174	-0.5765	-0.00022132	0.34242	0.00013146	-0.23407	-8.9862E-05	383.9046559848667	19.253	1.1145	19.253	19.145	20.26	0					55	22	6	0	0	0	0.35272	1	5926	5926		56.632	0	1	10962000			15253	1574;22557	9530	9574	15494	15494					0.1233455332817357
GVANALAHK	9	Unmodified	_GVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.7530822753906	2	440.753601	879.49265	-0.28577	-0.00012595	-0.26622	-0.00011734	-0.55199	-0.00024329	440.7534982085984	19.254	0.1819	19.254	19.186	19.368	0					10	5	3	0	0	0	0.030949	1	4936	4936		108.09	44.781	1	689510			15254	7970	9531	9575	15495	15495					0.048083378201340565
GVANALAHK	9	Unmodified	_GVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7534484863281	2	440.753601	879.49265	-0.34879	-0.00015373	-0.0076234	-3.36E-06	-0.35642	-0.00015709	440.7536193929976	19.608	0.27677	19.608	19.508	19.784	0					15	6	4	0	0	0	0.0090225	1	5935	5935		143.11	54.464	1	4953900			15255	7970	9531	9575	15496	15496					0.048083378201340565
GVANALAHK	9	Unmodified	_GVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7532653808594	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.26	1	19.26	18.76	19.76	0								0	0	0	0.0010356	1	5183	5183		143.11	58.191	1				15256	7970	9531	9575	15497	15497					0.048083378201340565
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2710876464844	2	466.271627	930.528701	0.061446	2.865E-05	-0.37538	-0.00017503	-0.31393	-0.00014638	466.2714373643603	35.594	0.38705	35.594	35.479	35.866	0					49	19	3	0	0	0	0.44593	1	11636	11636		37.812	2.1932	1	1114200			15257	5547	9532	9576	15498	15498					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2707824707031	2	466.271627	930.528701	-0.43796	-0.00020421	-1.0407	-0.00048526	-1.4787	-0.00068947	466.27104761203054	35.647	0.16403	35.647	35.531	35.695	0					12	8	2	0	0	0	0.45358	1	11676	11676		37.159	37.159	1	49298			15258	5547	9532	9576	15499	15499					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.27117919921875	2	466.271627	930.528701	-0.62691	-0.00029231	-0.0039184	-1.827E-06	-0.63083	-0.00029414	466.27159864171153	35.697	0.39635	35.697	35.544	35.94	0					45	15	4	0	0	0	0.1424	1	12688	12688		69.628	21.712	1	1364200			15259	5547	9532	9576	15500	15500					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2713623046875	2	466.271627	930.528701	-0.49902	-0.00023268	0.12482	5.8199E-05	-0.3742	-0.00017448	466.2716872694622	35.797	0.61229	35.797	35.637	36.249	0					28	12	4	0	0	0	0.15163	1	13835	13835		67.494	21.521	1	1517800			15260	5547	9532	9576	15501	15501					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.27130126953125	2	466.271627	930.528701	0.65285	0.0003044	-1.0924	-0.00050937	-0.43958	-0.00020496	466.27113899827646	35.825	1.0616	35.825	35.62	36.681	0					49	21	4	0	0	0	0.019882	1	13829	13829		122.18	45.329	1	11185000			15261	5547	9532	9576	15502	15502					0.06065794997005014
GVAQCIGSI	9	Carbamidomethyl (C)	_GVAQC(Carbamidomethyl (C))IGSI_	GVAQC(1)IGSI		GVAQC(46)IGSI		0	1	0			REV__ENST00000569510.5_1_15:84323016-84530322:+|nuORF	REV__ENST00000569510.5_1_15:84323016-84530322:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2319641113281	2	452.731477	903.448402	-0.52979	-0.00023985	-0.23179	-0.00010494	-0.76158	-0.00034479	452.7314962101703	19.805	0.46352	19.805	19.508	19.971	0					33	10	4	0	0	0	0.35045	1	5981	5981		45.952	8.9235	1	2273800	+		15262	12078	9533	9577	15503	15503	479				-0.007184343883636757
GVARKEPAR	9	Unmodified	_GVARKEPAR_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.S595Vfs*62|1|0.12|ENSG00000130479|chr19:17727160-17727160|C/-|frameshift_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.29071044921875	2	492.290882	982.567212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.213	1	19.213	18.713	19.713	0								0	0	0	0.14881	1	5896	5896		60.118	1.8883	1				15263	3645	9534	9578	15504	15504					0.07523100631499346
GVASGVIVQ	9	Unmodified	_GVASGVIVQ_					0	0	0			REV__nc|ENSG00000240268|A6NHM9|MOXD2P	REV__nc|ENSG00000240268|A6NHM9|MOXD2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.2425537109375	2	415.242535	828.470518	-0.063861	-2.6518E-05	0.095471	3.9644E-05	0.03161	1.3126E-05	415.24251858008705	25.4	0.2359	25.4	25.252	25.488	0					9	5	2	0	0	0	0.32741	1	8061	8061		47.916	5.5195	1	107520	+		15264	21223	9535	9579	15505	15505					0.04942113351705757
GVATALRDNLV	11	Unmodified	_GVATALRDNLV_					0	0	0			REV__ENST00000247295.4_1_9:134133967-134134456:-|nuORF	REV__ENST00000247295.4_1_9:134133967-134134456:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8223876953125	2	564.822212	1127.62987	0.86024	0.00048588	-0.48669	-0.00027489	0.37355	0.00021099	564.8219764357995	32.581	0.26492	32.581	32.472	32.737	0					9	5	2	0	0	0	0.38515	1	12311	12311		53.089	7.1167	1	202290	+		15265	17947	9536	9580	15506	15506					0.07116201909025222
GVAVVRVK	8	Unmodified	_GVAVVRVK_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.276611328125	2	414.276712	826.538872	-0.1627	-6.7401E-05	-0.25509	-0.00010568	-0.41778	-0.00017308	414.27658449188124	18.836	0.32826	18.836	18.611	18.939	0					13	9	2	0	0	0	0.7914	1	4742	4742		14.664	0.88877	1	80714	+		15266	13183	9537	9581	15507	15507					0.11866402722228031
GVCGKGFKK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))GKGFKK_	GVC(1)GKGFKK		GVC(79)GKGFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7706298828125	2	490.770937	979.527321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.126	1	15.126	14.626	15.626	0								0	0	0	0.073265	1	3840	3840		79.451	37.055	1				15267	6007	9538	9582	15508	15508	251				0.036738376365974545
GVCGKGFKK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))GKGFKK_	GVC(1)GKGFKK		GVC(57)GKGFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.5163879394531	3	327.516383	979.527321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.132	1	15.132	14.632	15.632	0								0	0	0	0.1633	1	3842	3842		56.721	17.967	1				15268	6007	9538	9582	15509	15509	251				0.036738376365974545
GVCGKGFKK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))GKGFKK_	GVC(1)GKGFKK		GVC(72)GKGFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.51629638671875	3	327.516383	979.527321	-0.66756	-0.00021864	0.21295	6.9745E-05	-0.45461	-0.00014889	327.51641428205613	14.885	0.1072	14.885	14.825	14.933	0					5	4	2	0	0	0	0.13267	1	3307	3307		71.877	17.155	1	38397			15269	6007	9538	9582	15510	15510	251				0.036738376365974545
GVCGKGFKK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))GKGFKK_	GVC(1)GKGFKK		GVC(100)GKGFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7707824707031	2	490.770937	979.527321	-0.72619	-0.00035639	0.29008	0.00014236	-0.43611	-0.00021403	490.77110539318375	15.121	0.40566	15.121	15.011	15.417	0					13	8	2	0	0	0	0.036372	1	4080	4080		102.77	55.116	1	3700600			15270	6007	9538	9582	15511	15511	251				0.036738376365974545
GVCSTLTIK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STLTIK_	GVC(1)STLTIK		GVC(58)STLTIK		0	1	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7679443359375	2	489.76806	977.521567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.486	1	29.486	28.986	29.986	0								0	0	0	0.15687	1	9311	9311		58.23	23.078	1				15271	10932	9539	9583	15512	15512	440				0.03190694334261934
GVCSTLTIK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STLTIK_	GVC(1)STLTIK		GVC(100)STLTIK		0	1	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.76806640625	2	489.76806	977.521567	0.79929	0.00039147	-1.5265	-0.00074762	-0.72719	-0.00035616	489.76754015999444	29.775	0.33094	29.775	29.614	29.944	0					27	8	5	0	0	0	0.037924	2	10661	10661;10680		101.25	22.989	1	1675700			15272	10932	9539	9583	15513;15514	15513	440				0.03190694334261934
GVCSTLTIK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STLTIK_	GVC(1)STLTIK		GVC(65)STLTIK		0	1	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7686767578125	2	489.76806	977.521567	3.4949	0.0017117	-2.8349	-0.0013884	0.66004	0.00032327	489.76688204582945	29.504	0.14159	29.504	29.44	29.582	0					9	5	2	0	0	0	0.16806	1	9614	9614		65.465	17.808	1	70330			15273	10932	9539	9583	15515	15515	440				0.03190694334261934
GVCSTLTIK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STLTIK_	GVC(1)STLTIK		GVC(93)STLTIK		0	1	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7675476074219	2	489.76806	977.521567	-0.071701	-3.5117E-05	-1.0238	-0.00050141	-1.0955	-0.00053653	489.7676853436107	29.776	0.26569	29.776	29.667	29.933	0					15	5	4	0	0	0	0.056004	1	11047	11047		93.143	28.936	1	742620			15274	10932	9539	9583	15516	15516	440				0.03190694334261934
GVCSTLTIK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STLTIK_	GVC(1)STLTIK		GVC(67)STLTIK		0	1	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.76788330078125	2	489.76806	977.521567	-0.13827	-6.7719E-05	0.2722	0.00013332	0.13393	6.5596E-05	489.76828875950383	29.542	0.2124	29.542	29.415	29.628	0					8	5	2	0	0	0	0.15163	1	9946	9946		67.494	14.557	1	207850			15275	10932	9539	9583	15517	15517	440				0.03190694334261934
GVCSTLTIK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STLTIK_	GVC(1)STLTIK		GVC(110)STLTIK		0	1	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7676696777344	2	489.76806	977.521567	-0.52963	-0.00025939	-0.36641	-0.00017946	-0.89604	-0.00043885	489.7680696185977	29.706	0.31339	29.706	29.6	29.913	0					19	6	4	0	0	0	0.026538	2	10901	10901;10924		112.41	29.66	1	1610000			15276	10932	9539	9583	15518;15519	15518	440				0.03190694334261934
GVCSTLTIK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STLTIK_	GVC(1)STLTIK		GVC(110)STLTIK		0	1	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7678527832031	2	489.76806	977.521567	0.77203	0.00037811	-1.5351	-0.00075184	-0.76308	-0.00037373	489.7675506846056	29.689	0.26314	29.689	29.583	29.846	0					15	5	4	0	0	0	0.026538	2	10918	10918;10942		112.41	27.25	1	1601200			15277	10932	9539	9583	15520;15521	15520	440				0.03190694334261934
GVCTKITQK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))TKITQK_	GVC(1)TKITQK		GVC(150)TKITQK		0	1	0		ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7869262695312	2	517.786784	1033.55902	0.048696	2.5214E-05	-0.4719	-0.00024434	-0.42321	-0.00021913	517.7866561993864	17.891	0.1798	17.891	17.762	17.942	0					11	4	4	0	0	0	0.0071053	1	5122	5122		148.99	66.682	1	1029300			15278	6709	9540	9584	15522	15522	286				0.043577855998591986
GVCTKITQK	9	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))TKITQK_	GVC(1)TKITQK		GVC(80)TKITQK		0	1	0		ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7867431640625	2	517.786784	1033.55902	-0.43446	-0.00022496	0.012214	6.3245E-06	-0.42225	-0.00021863	517.786907410715	17.828	0.11885	17.828	17.768	17.887	0					4	2	2	0	0	0	0.095583	1	5379	5379		80.455	32.539	1	245120			15279	6709	9540	9584	15523	15523	286				0.043577855998591986
GVCVFRAK	8	Unmodified	_GVCVFRAK_					0	0	0			REV__CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant	REV__CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.2489013671875	2	440.247098	878.479642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.558	1	12.558	12.058	13.058	0								0	0	0	1.7419	1	2700	2700		8.8223	0	1		+		15280	12663	9541	9585	15524	15524					0.035541834363812086
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	353.5099792480469	3	353.509952	1057.50803	0.42681	0.00015088	-0.24877	-8.7941E-05	0.17804	6.2939E-05	353.5098324692243	23.723	0.19049	23.723	23.622	23.812	0					16	6	3	0	0	0	0.56424	1	6901	6901		47.96	24.437	1	266940			15281	9141	9542	9586	15525	15525					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7614135742188	2	529.761289	1057.50803	0.017617	9.3329E-06	0.7796	0.000413	0.79721	0.00042233	529.7616080563979	23.738	0.42196	23.738	23.642	24.064	0					43	14	4	0	0	0	0.021015	1	7163	7163		120.31	46.051	1	2106200			15282	9141	9542	9586	15526	15526					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7614135742188	2	529.761289	1057.50803	1.7346	0.00091894	-1.5545	-0.00082353	0.18011	9.5413E-05	529.7603597442778	23.956	0.81775	23.956	23.646	24.463	0					43	16	4	0	0	0	0.011893	1	8308	8308		136.99	48.812	1	11587000			15283	9141	9542	9586	15527	15527					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7621459960938	2	529.761289	1057.50803	1.2152	0.00064376	-0.62576	-0.0003315	0.58944	0.00031226	529.7609706094104	23.752	0.37389	23.752	23.673	24.047	0					25	9	5	0	0	0	0.040209	1	7293	7293		99.013	15.366	1	1286200			15284	9141	9542	9586	15528	15528					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.5097961425781	3	353.509952	1057.50803	-0.081479	-2.8804E-05	-0.23669	-8.3671E-05	-0.31817	-0.00011248	353.5098428158061	23.752	0.22598	23.752	23.673	23.899	0					12	5	3	0	0	0	0.27249	1	7309	7309		68.846	34.76	1	503830			15285	9141	9542	9586	15529	15529					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7616577148438	2	529.761289	1057.50803	-1.1917	-0.00063131	2.1996	0.0011653	1.0079	0.00053397	529.7623491088659	23.786	0.32859	23.786	23.665	23.994	0					21	8	4	0	0	0	0.029571	1	7303	7303		109.44	45.232	1	990020			15286	9141	9542	9586	15530	15530					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7615356445312	2	529.761289	1057.50803	1.634	0.00086563	-1.209	-0.00064049	0.425	0.00022515	529.7605267879862	23.923	0.66697	23.923	23.813	24.48	0					40	13	5	0	0	0	0.0055674	1	8165	8165		155.58	46.106	1	12387000			15287	9141	9542	9586	15531	15531					-0.018428401733444844
GVDDVFLVL	9	Unmodified	_GVDDVFLVL_					0	0	0			REV__sp|P16751|UL78_HCMVAUncharacterizedproteinUL78OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL78PE=1SV=1	REV__sp|P16751|UL78_HCMVAUncharacterizedproteinUL78OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL78PE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.1824645996094	3	326.183176	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.25	1	14.25	13.75	14.75	0								0	0	0	0.36609	1	2909	2909		20.947	5.3051	1		+		15288	21566	9543	9587	15532	15532					0.038955358374209936
GVDGSVYKK	9	Unmodified	_GVDGSVYKK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7588195800781	2	476.758549	951.502546	-0.13536	-6.4534E-05	-0.10324	-4.9223E-05	-0.23861	-0.00011376	476.75850532007524	17.235	0.10321	17.235	17.165	17.268	0					5	3	2	0	0	0	0.35021	1	4064	4064		45.972	11.8	1	121850			15289	5314;9629	9544	9588	15533	15533					0.0248548103485291
GVDGSVYKK	9	Unmodified	_GVDGSVYKK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.75811767578125	2	476.758549	951.502546	-0.36206	-0.00017262	-0.22363	-0.00010662	-0.5857	-0.00027924	476.7583429574812	17.536	0.13141	17.536	17.448	17.579	0					6	3	2	0	0	0	0.032052	1	4976	4976		107.01	42.8	1	675010			15290	5314;9629	9544	9588	15534	15534					0.0248548103485291
GVDGSVYKK	9	Unmodified	_GVDGSVYKK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.75860595703125	2	476.758549	951.502546	-0.41131	-0.0001961	-0.105	-5.0061E-05	-0.51632	-0.00024616	476.7586139873733	17.275	0.08288	17.275	17.195	17.278	0					4	2	2	0	0	0	0.063823	1	4290	4290		90.37	37.018	1	87451			15291	5314;9629	9544	9588	15535	15535					0.0248548103485291
GVDGSVYKK	9	Unmodified	_GVDGSVYKK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.75836181640625	2	476.758549	951.502546	-0.38943	-0.00018566	0.70984	0.00033842	0.32041	0.00015276	476.75889956665344	17.525	0.2633	17.525	17.421	17.684	0					7	5	2	0	0	0	0.085655	1	5210	5210		82.75	23.969	1	327700			15292	5314;9629	9544	9588	15536	15536					0.0248548103485291
GVDITKIQVKR	11	Unmodified	_GVDITKIQVKR_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.59429931640625	3	419.59435	1255.76122	-0.30221	-0.0001268	0.13739	5.7649E-05	-0.16482	-6.9156E-05	419.594407412975	32.14	0.52277	32.14	32.017	32.54	0					23	10	3	0	0	0	0.36734	1	12072	12072		55.084	1.487	1	311990			15293	1306	9545	9589	15537	15537					0.1435701227694608
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.3040771484375	2	596.303852	1190.59315	0.13402	7.9917E-05	-0.1672	-9.97E-05	-0.033175	-1.9782E-05	596.3036864162195	33.653	0.30387	33.653	33.555	33.859	0					31	12	4	0	0	0	0.00032121	1	10942	10942		142.36	71.545	1	846520			15294	4244	9546	9590	15538	15538					0.0054790529247839
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.3038330078125	2	596.303852	1190.59315	0.11701	6.9774E-05	-0.058426	-3.484E-05	0.058585	3.4934E-05	596.3039045716913	33.912	0.38139	33.912	33.8	34.181	0					33	10	4	0	0	0	9.1445E-06	1	12556	12556		178.55	77.295	1	3791600			15295	4244	9546	9590	15539	15539					0.0054790529247839
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.30517578125	2	596.303852	1190.59315	0.22535	0.00013438	0.1009	6.0168E-05	0.32625	0.00019455	596.303997474834	33.706	0.29594	33.706	33.617	33.913	0					27	11	3	0	0	0	0.0011742	1	11309	11309		131.62	60.8	1	643650			15296	4244	9546	9590	15540	15540					0.0054790529247839
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.805908203125	2	596.303852	1190.59315	0.10063	6.0004E-05	0.12153	7.2468E-05	0.22215	0.00013247	596.3039809250604	33.899	0.42753	33.899	33.785	34.213	0					29	10	4	0	0	0	3.867E-05	1	12986	12986		166.07	75.47	1	3846700			15297	4244	9546	9590	15541	15541					0.0054790529247839
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.3037719726562	2	596.303852	1190.59315	-1.8274	-0.0010897	1.5854	0.0009454	-0.242	-0.00014431	596.3048863938975	33.677	0.2102	33.677	33.597	33.807	0					12	6	3	0	0	0	0.051542	1	11833	11833		104.42	33.607	1	169660			15298	4244	9546	9590	15542	15542					0.0054790529247839
GVEYKQQK	8	Unmodified	_GVEYKQQK_					0	0	0			REV__ENST00000460780.5_1_1:201330340-201331096:-|nuORF	REV__ENST00000460780.5_1_1:201330340-201331096:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	327.1783752441406	3	327.178425	978.513445	0.007156	2.3413E-06	-0.2955	-9.6681E-05	-0.28834	-9.434E-05	327.17837100696664	16.658	0.1648	16.658	16.549	16.714	0					9	3	3	0	0	0	0.68432	1	4664	4664		35.618	1.4457	1	1872000	+		15299	19373	9547	9591	15543	15543					0.02332883409144415
GVFEGHTSK	9	Unmodified	_GVFEGHTSK_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.24029541015625	2	481.240524	960.466495	0.086946	4.1842E-05	-0.27856	-0.00013405	-0.19161	-9.2211E-05	481.24024856351224	17.69	0.15077	17.69	17.617	17.768	0					6	4	2	0	0	0	0.085655	1	4272	4272		82.75	44.939	1	199200			15300	2262	9548	9592	15544	15544					-0.015319761420187206
GVFEGHTSK	9	Unmodified	_GVFEGHTSK_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2401123046875	2	481.240524	960.466495	-0.13833	-6.6568E-05	-0.33755	-0.00016244	-0.47588	-0.00022901	481.2402533100913	17.983	0.36811	17.983	17.926	18.294	0					11	8	2	0	0	0	0.01873	1	5187	5187		124.08	67.359	1	1037500			15301	2262	9548	9592	15545	15545					-0.015319761420187206
GVFEGHTSK	9	Unmodified	_GVFEGHTSK_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.24029541015625	2	481.240524	960.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.743	1	17.743	17.243	18.243	0								0	0	0	0.25587	1	4507	4507		42.864	4.0581	1				15302	2262	9548	9592	15546	15546					-0.015319761420187206
GVFEGHTSK	9	Unmodified	_GVFEGHTSK_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2413024902344	2	481.240524	960.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.998	1	17.998	17.498	18.498	0								0	0	0	0.015064	1	5446	5446		104.06	43.085	1				15303	2262	9548	9592	15547	15547					-0.015319761420187206
GVFEYFNAK	9	Unmodified	_GVFEYFNAK_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7666625976562	2	537.766374	1073.5182	2.0771	0.001117	-0.2274	-0.00012229	1.8497	0.00099472	537.7660768948666	43.34	0.14219	43.34	43.252	43.394	0					12	8	2	0	0	0	0.25716	1	16348	16348		54.776	15.523	1	46807			15304	2182	9549	9593	15548	15548					-0.015622324481228134
GVFEYFNAK	9	Unmodified	_GVFEYFNAK_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7673950195312	2	537.766374	1073.5182	1.8887	0.0010157	0.70741	0.00038042	2.5961	0.0013961	537.7667291734025	43.283	0.23156	43.283	43.21	43.441	0					23	13	3	0	0	0	0.27249	1	16940	16940		52.937	22.368	1	167310			15305	2182	9549	9593	15549	15549					-0.015622324481228134
GVFEYFNAK	9	Unmodified	_GVFEYFNAK_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7671508789062	2	537.766374	1073.5182	1.9982	0.0010746	0.046219	2.4855E-05	2.0444	0.0010994	537.7663777251735	43.213	0.31863	43.213	43.107	43.426	0					23	11	3	0	0	0	0.078509	1	17284	17284		85.161	42.823	1	309680			15306	2182	9549	9593	15550	15550					-0.015622324481228134
GVFFINRQ	8	Unmodified	_GVFFINRQ_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	327.5163269042969	3	327.51526	979.52395	3.0006	0.00098273	0.051193	1.6766E-05	3.0518	0.0009995	327.5153854196985	15.087	0.41935	15.087	14.978	15.397	0					15	8	3	0	0	0	0.72892	1	3910	3910		40.573	40.573	1	2249000			15307	6176	9550	9594	15551	15551					0.03336910854238795
GVFGLLGTRI	10	Unmodified	_GVFGLLGTRI_					0	0	0			REV__nc|ENSG00000151240|Q9Y2E4-2|DIP2C	REV__nc|ENSG00000151240|Q9Y2E4-2|DIP2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.8792419433594	3	344.878198	1031.61277	1.4663	0.00050571	1.1672	0.00040254	2.6335	0.00090825	344.87874345222565	24.849	0.36183	24.849	24.694	25.056	0					18	7	4	0	0	0	0.62235	1	8759	8759		31.53	1.2121	1	1478400	+		15308	12707	9551	9595	15552	15552					0.09822326093899392
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	355.5415954589844	3	355.541475	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.226	1	15.226	14.726	15.726	0								0	0	0	0.32356	1	3273	3273		37.812	8.6415	1				15309	3148	9552	9596	15553	15553					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8088989257812	2	532.808574	1063.60259	0.41236	0.00021971	1.1699	0.00062331	1.5822	0.00084303	532.8092892916219	15.202	0.13855	15.202	15.138	15.277	0					8	4	3	0	0	0	0.063171	1	3250	3250		90.601	21.814	1	450740			15310	3148	9552	9596	15554	15554					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.5413818359375	3	355.541475	1063.60259	0.71463	0.00025408	-0.67816	-0.00024111	0.036478	1.2969E-05	355.54119178680025	15.481	0.1749	15.481	15.41	15.584	0					15	4	5	0	0	0	0.087861	1	4003	4003		88.177	13.922	1	1492800			15311	3148	9552	9596	15555	15555					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8089599609375	2	532.808574	1063.60259	0.13096	6.9776E-05	0.48615	0.00025903	0.61711	0.0003288	532.8087644741739	15.487	0.21829	15.487	15.397	15.615	0					19	5	5	0	0	0	0.0059092	1	3996	3996		154.12	54.743	1	2576400			15312	3148	9552	9596	15556	15556					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.8104248046875	2	532.808574	1063.60259	-0.34313	-0.00018282	1.3607	0.00072498	1.0176	0.00054216	532.8093931847877	15.239	0.10501	15.239	15.178	15.283	0					5	3	2	0	0	0	0.02953	1	3426	3426		109.48	24.563	1	279670			15313	3148	9552	9596	15557	15557					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	355.5414123535156	3	355.541475	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.268	1	15.268	14.768	15.768	0								0	0	0	0.23459	1	3447	3447		44.377	26.115	1				15314	3148	9552	9596	15558	15558					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.8093872070312	2	532.808574	1063.60259	1.7209	0.00091688	-0.34355	-0.00018305	1.3773	0.00073384	532.8084385609709	15.475	0.2642	15.475	15.37	15.634	0					11	5	3	0	0	0	0.10915	1	4251	4251		77.318	0.54344	1	1898500			15315	3148	9552	9596	15559	15559					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	355.5413513183594	3	355.541475	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.293	1	15.293	14.793	15.793	0								0	0	0	0.27025	1	3397	3397		47.96	18.789	1				15316	3148	9552	9596	15560	15560					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8087768554688	2	532.808574	1063.60259	-1.286	-0.00068521	1.8958	0.0010101	0.6098	0.00032491	532.8093535054014	15.285	0.11502	15.285	15.226	15.341	0					7	3	3	0	0	0	0.017421	1	3390	3390		126.24	35.466	1	205150			15317	3148	9552	9596	15561	15561					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.5414123535156	3	355.541475	1063.60259	1.414	0.00050273	-1.5136	-0.00053815	-0.099607	-3.5414E-05	355.54087797032287	15.406	0.1983	15.406	15.347	15.546	0					6	4	2	0	0	0	0.0792	1	4063	4063		90.601	32.371	1	2239000			15318	3148	9552	9596	15562	15562					0.07333718368658992
GVFSGTSRQ	9	Unmodified	_GVFSGTSRQ_					0	0	0			REV__ENST00000484495.5_1_7:95799231-95818686:-|nuORF	REV__ENST00000484495.5_1_7:95799231-95818686:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7388000488281	2	469.738148	937.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.799	1	13.799	13.299	14.299	0								0	0	0	0.3368	1	2748	2748		27.882	5.9224	1		+		15319	12830	9553	9597	15563	15563					-0.009488602847568472
GVGAVLGF	8	Unmodified	_GVGAVLGF_					0	0	0		tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.2067565917969	2	360.207964	718.401375	-2.0405	-0.000735	-0.87924	-0.00031671	-2.9197	-0.0010517	360.2075348214464	44.92	0.36595	44.92	44.833	45.199	0					43	22	3	0	0	0	0.77013	1	15353	15353		24.504	0	1	296630			15320	22620	9554	9598	15564	15564					0.03091074122801274
GVGEVLHVK	9	Unmodified	_GVGEVLHVK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2767639160156	2	469.276909	936.539266	-0.43275	-0.00020308	-0.47639	-0.00022356	-0.90914	-0.00042664	469.2767977140314	26.446	0.17719	26.446	26.38	26.557	0					12	6	3	0	0	0	0.24095	1	8033	8033		56.721	16.148	1	153490			15321	7794	9555	9599	15565	15565					0.06845777651415119
GVGEVLHVK	9	Unmodified	_GVGEVLHVK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2766418457031	2	469.276909	936.539266	-0.63065	-0.00029595	0.40873	0.00019181	-0.22191	-0.00010414	469.27716847347915	26.711	0.23156	26.711	26.615	26.847	0					12	5	3	0	0	0	0.019882	1	9254	9254		122.18	66.672	1	959660			15322	7794	9555	9599	15566	15566					0.06845777651415119
GVGEVLHVK	9	Unmodified	_GVGEVLHVK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2767028808594	2	469.276909	936.539266	-0.96768	-0.00045411	0.42252	0.00019828	-0.54516	-0.00025583	469.2770971170931	26.459	0.12541	26.459	26.366	26.491	0					7	4	2	0	0	0	0.098791	1	8316	8316		79.713	30.271	1	108420			15323	7794	9555	9599	15567	15567					0.06845777651415119
GVGEVLHVK	9	Unmodified	_GVGEVLHVK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2769775390625	2	469.276909	936.539266	-0.97466	-0.00045738	0.89625	0.00042059	-0.078409	-3.6795E-05	469.27735391142863	26.702	0.21729	26.702	26.594	26.811	0					13	4	4	0	0	0	0.07136	1	9598	9598		87.696	30.975	1	667560			15324	7794	9555	9599	15568	15568					0.06845777651415119
GVGGEFCGGP	10	Unmodified	_GVGGEFCGGP_					0	0	0			REV__KCNC2|p.A82V|1|0.26|ENSG00000166006|chr12:75207739-75207739|G/A|missense_variant	REV__KCNC2|p.A82V|1|0.26|ENSG00000166006|chr12:75207739-75207739|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.1883239746094	2	440.186903	878.359253	0.56129	0.00024707	1.9766	0.00087006	2.5379	0.0011171	440.18816063111535	26.06	0.76125	26.06	25.704	26.465	0					55	16	5	0	0	0	0.63073	1	9045	9045		30.504	2.6214	1	3734400	+		15325	20775	9556	9600	15569	15569					-0.08479269347878926
GVGGYLPL	8	Unmodified	_GVGGYLPL_					0	0	0		HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|154|3|anti-sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|154|3|anti-sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|154|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.2210388183594	2	388.221072	774.42759	0.18539	7.1973E-05	0.4249	0.00016495	0.61029	0.00023693	388.2212418697328	36.171	0.20187	36.171	36.052	36.254	0					14	6	3	0	0	0	0.70073	1	14050	14050		33.493	8.989	1	145410			15326	11199	9557	9601	15570	15570					0.031353432942864856
GVGKKFYEI	9	Unmodified	_GVGKKFYEI_					0	0	0		tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7928466796875	2	520.792392	1039.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.39	1	44.39	43.89	44.89	0								0	0	0	0.1633	1	17784	17784		56.721	6.6965	1				15327	22843	9558	9602	15571	15571					0.05202930965674568
GVGNVRVK	8	Unmodified	_GVGNVRVK_					0	0	0		TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant;ENSG00000181234|ENST00000435159|TMEM132C	TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant	TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.75616455078125	2	414.756144	827.497735	-1.4675	-0.00060867	0.99707	0.00041354	-0.47046	-0.00019513	414.7566649812086	24.058	0.19855	24.058	23.991	24.189	0					9	6	2	0	0	0	0.5676	1	7321	7321		53.351	9.2347	1	249730			15328	6846	9559	9603	15572	15572					0.07708641682756934
GVGNVRVK	8	Unmodified	_GVGNVRVK_					0	0	0		TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant;ENSG00000181234|ENST00000435159|TMEM132C	TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant	TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.756103515625	2	414.756144	827.497735	-2.329	-0.00096595	1.8493	0.000767	-0.47969	-0.00019895	414.7570241415533	24.072	0.18912	24.072	23.983	24.172	0					8	4	3	0	0	0	0.65276	1	7460	7460		40.573	10.069	1	280250			15329	6846	9559	9603	15573	15573					0.07708641682756934
GVGPLTHR	8	Unmodified	_GVGPLTHR_					0	0	0		ENST00000588599.5_1_19:46194935-46195007:-|nuORF	ENST00000588599.5_1_19:46194935-46195007:-|nuORF	ENST00000588599.5_1_19:46194935-46195007:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	418.7386169433594	2	418.740494	835.466435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.482	1	27.482	26.982	27.982	0								0	0	0	1.7419	1	8474	8474		21.702	1.2205	1				15330	10925	9560	9604	15574	15574					0.042120686486555314
GVGPSGVLQ	9	Unmodified	_GVGPSGVLQ_					0	0	0		chr7:144259632-144272445|379|10.28|0.0|19.97|-|1|OR2A7,ARHGEF34P|1	chr7:144259632-144272445|379|10.28|0.0|19.97|-|1|OR2A7,ARHGEF34P|1	chr7:144259632-144272445|379|10.28|0.0|19.97|-|1|OR2A7,ARHGEF34P|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.2270202636719	2	407.226885	812.439217	0.64346	0.00026203	-0.51403	-0.00020933	0.12943	5.2708E-05	407.2266458365384	17.369	0.45583	17.369	17.071	17.527	0					20	11	3	0	0	0	0.45358	1	4856	4856		37.159	0	1	199360			15331	533	9561	9605	15575	15575					0.025495403176250875
GVGPYFPP	8	Unmodified	_GVGPYFPP_					0	0	0			REV__nc|ENSG00000140299|Q12982-2|BNIP2	REV__nc|ENSG00000140299|Q12982-2|BNIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.2124938964844	2	417.213246	832.41194	-0.31633	-0.00013198	-1.5796	-0.00065903	-1.8959	-0.000791	417.21269263336274	16.117	0.11856	16.117	16.047	16.166	0					4	2	2	0	0	0	0.70073	1	4405	4405		33.493	6.6969	1	75246	+		15332	21044	9562	9606	15576	15576					-0.010969432227739162
GVGQLPQSP	9	Unmodified	_GVGQLPQSP_					0	0	0		ENST00000339560.9_1_19:14048664-14049262:-|nuORF	ENST00000339560.9_1_19:14048664-14049262:-|nuORF	ENST00000339560.9_1_19:14048664-14049262:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.7379150390625	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.65	1	19.65	19.15	20.15	0								0	0	0	0.24724	1	5377	5377		44.117	6.3053	1				15333	8721	9563	9607	15577	15577					0.015209253463240202
GVHAKRGG	8	Unmodified	_GVHAKRGG_					0	0	0		CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2254943847656	2	391.225011	780.435469	0.87839	0.00034365	-0.41427	-0.00016207	0.46412	0.00018157	391.22479503018076	43.697	1.5441	43.697	43.319	44.863	0					126	89	3	0	0	0	0.79176	1	16561	16561		21.702	21.702	1	305500			15334	361	9564	9608	15578	15578					0.036469153344341976
GVHAKRGG	8	Unmodified	_GVHAKRGG_					0	0	0		CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.22503662109375	2	391.225011	780.435469	-0.1253	-4.9022E-05	0.38502	0.00015063	0.25972	0.00010161	391.2250295684442	42.846	0.71018	42.846	42.337	43.047	0					50	37	2	0	0	0	0.79293	1	16198	16198		15.636	15.636	1	81100			15335	361	9564	9608	15579	15579					0.036469153344341976
GVHAKRGG	8	Unmodified	_GVHAKRGG_					0	0	0		CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.22491455078125	2	391.225011	780.435469	-0.12552	-4.9105E-05	0.28296	0.0001107	0.15745	6.1598E-05	391.2250495168464	44.302	1.5378	44.302	43.399	44.937	0					131	89	2	0	0	0	0.74117	1	16699	16699		28.254	7.7724	1	196140			15336	361	9564	9608	15580	15580					0.036469153344341976
GVHAKRGG	8	Unmodified	_GVHAKRGG_					0	0	0		CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2252197265625	2	391.225011	780.435469	-0.1257	-4.9177E-05	0.4134	0.00016173	0.2877	0.00011255	391.22505026559384	45.049	0.35187	45.049	44.901	45.253	0					32	21	2	0	0	0	0.78146	1	16791	16791		23.037	23.037	1	101010			15337	361	9564	9608	15581	15581					0.036469153344341976
GVHAKRGG	8	Unmodified	_GVHAKRGG_					0	0	0		CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	CALN1|p.Y70Vfs*26|1|0.3|ENSG00000183166|chr7:72106205-72106206|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2247314453125	2	391.225011	780.435469	0.34168	0.00013367	-0.16073	-6.288E-05	0.18095	7.0793E-05	391.2248343886734	43.882	2.0593	43.882	43.246	45.306	0					281	113	3	0	0	0	0.79176	1	17451	17451		21.702	7.0382	1	459120			15338	361	9564	9608	15582	15582					0.036469153344341976
GVHASASAI	9	Unmodified	_GVHASASAI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.71636962890625	2	406.716685	811.418816	0.62263	0.00025323	-0.2141	-8.7079E-05	0.40853	0.00016616	406.7165737049514	23.84	0.15372	23.84	23.751	23.905	0					11	6	2	0	0	0	0.30268	1	6945	6945		50.025	2.1089	1	84491			15339	7354	9565	9609	15583	15583					0.0055636965781786785
GVHASASAI	9	Unmodified	_GVHASASAI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.7164001464844	2	406.716685	811.418816	1.1423	0.00046459	-1.2915	-0.00052529	-0.14926	-6.0708E-05	406.716158539005	24.104	0.16832	24.104	23.995	24.163	0					8	3	3	0	0	0	0.21116	1	8382	8382		60.294	12.378	1	911800			15340	7354	9565	9609	15584	15584					0.0055636965781786785
GVHGGLINK	9	Unmodified	_GVHGGLINK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.76171875	2	447.761426	893.5083	0.60027	0.00026878	-0.02207	-9.8823E-06	0.5782	0.00025889	447.7613910283942	18.847	0.13185	18.847	18.798	18.93	0					5	3	2	0	0	0	0.032656	1	4772	4772		106.42	0	1	263100			15341	2532	9566	9610	15585	15585					0.057286243371777346
GVHGGLINK	9	Unmodified	_GVHGGLINK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7611389160156	2	447.761426	893.5083	0.075537	3.3822E-05	-0.69506	-0.00031122	-0.61952	-0.0002774	447.7611207370967	19.19	0.29544	19.19	19.094	19.389	0					12	6	3	0	0	0	0.013544	1	5756	5756		133.47	0	1	4047800			15342	2532	9566	9610	15586	15586					0.057286243371777346
GVHGGLINK	9	Unmodified	_GVHGGLINK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7612609863281	2	447.761426	893.5083	-0.11153	-4.9938E-05	-0.16753	-7.5011E-05	-0.27905	-0.00012495	447.7613372735035	19.14	0.31298	19.14	19.034	19.347	0					14	6	4	0	0	0	0.018785	1	5984	5984		123.99	0	1	2893500			15343	2532	9566	9610	15587	15587					0.057286243371777346
GVHGGLINKK	10	Unmodified	_GVHGGLINKK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.5417785644531	3	341.541697	1021.60326	0.67445	0.00023035	-0.83648	-0.00028569	-0.16203	-5.534E-05	341.54148391685555	16.539	0.097572	16.539	16.492	16.59	0					6	2	3	0	0	0	0.63073	1	4516	4516		35.152	7.2698	1	274430			15344	2532	9567	9611	15588	15588					0.09332557808363617
GVHLRPAG	8	Unmodified	_GVHLRPAG_					0	0	0		ENST00000342115.8_1_1:110162645-110168822:+|nuORF;ENST00000528667.5_1_1:110162570-110163847:+|nuORF	ENST00000342115.8_1_1:110162645-110168822:+|nuORF	ENST00000342115.8_1_1:110162645-110168822:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.9071044921875	2	403.735212	805.455871	0.040865	1.6499E-05	2.5544	0.0010313	2.5952	0.0010478	403.7350364661727	16.169	0.21713	16.169	16.03	16.247	0					6	4	2	0	0	0	0.78146	1	4565	4565		23.037	1.3344	1	139630			15345	8739	9568	9612	15589	15589					0.04536085994232053
GVHRGRSQ	8	Unmodified	_GVHRGRSQ_					0	0	0		ENST00000303586.11_1_19:35417916-35418045:+|nuORF	ENST00000303586.11_1_19:35417916-35418045:+|nuORF	ENST00000303586.11_1_19:35417916-35418045:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.7428283691406	2	448.744099	895.473646	-0.45334	-0.00020343	-1.865	-0.00083689	-2.3183	-0.0010403	448.74323251794306	16.95	0.25015	16.95	16.768	17.018	0					13	6	3	0	0	0	0.7126	1	4716	4716		31.955	6.5047	1	221230			15346	8506	9569	9613	15590	15590					0.021728012490939363
GVIAPRVQEA	10	Unmodified	_GVIAPRVQEA_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.2006530761719	3	347.201341	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.164	1	25.164	24.664	25.664	0								0	0	0	0.37276	1	7793	7793		28.081	7.2443	1				15347	1573	9570	9614	15591	15591					0.06444547708861137
GVIGQDGLLFK	11	Unmodified	_GVIGQDGLLFK_					0	0	0		ENST00000465860.5_1_9:37781981-37784738:-|nuORF;ENSG00000107371|ENST00000327304|EXOSC3	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8306884765625	2	573.829506	1145.64446	3.3505	0.0019226	-2.3676	-0.0013586	0.98285	0.00056399	573.8279340135498	44.987	0.18465	44.987	44.874	45.058	0					16	7	3	0	0	0	0.44025	1	18005	18005		48.602	7.1749	1	207800			15348	2480	9571	9615	15592	15592					0.07746274057171831
GVIIVGNPK	9	Unmodified	_GVIIVGNPK_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.7815246582031	2	448.781828	895.549102	-0.30239	-0.00013571	-0.63223	-0.00028373	-0.93462	-0.00041944	448.78135668584304	28.151	0.16614	28.151	28.082	28.248	0					8	5	2	0	0	0	0.25109	1	8767	8767		55.504	25.001	1	50957			15349	950	9572	9616	15593	15593					0.09714965656803543
GVIKAVDK	8	Unmodified	_GVIKAVDK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.25994873046875	2	415.260728	828.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.469	1	18.469	17.969	18.969	0								0	0	0	1.7419	1	4599	4599		84.916	13.62	1				15350	5177	9573	9617	15594	15594					0.08578990248417995
GVIKAVDK	8	Unmodified	_GVIKAVDK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.2603454589844	2	415.260728	828.506903	-1.4711	-0.00061087	0.49135	0.00020404	-0.9797	-0.00040683	415.2610197960064	18.469	0.090324	18.469	18.413	18.503	0					5	3	2	0	0	0	0.32597	1	4836	4836		79.713	21.901	1	82532			15351	5177	9573	9617	15595	15595					0.08578990248417995
GVIKAVDKK	9	Unmodified	_GVIKAVDKK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.30804443359375	2	479.30821	956.601866	0.0017601	8.4364E-07	-0.64039	-0.00030695	-0.63863	-0.0003061	479.30787873746806	16.17	0.17437	16.17	16.094	16.269	0					23	8	4	0	0	0	0.18416	1	3623	3623		63.534	4.7519	1	1145500			15352	5177	9574	9618	15596	15596					0.12182923719603878
GVIKAVDKK	9	Unmodified	_GVIKAVDKK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.308349609375	2	479.30821	956.601866	-0.22978	-0.00011014	-0.15321	-7.3437E-05	-0.383	-0.00018357	479.308153457134	16.489	0.27007	16.489	16.392	16.662	0					19	6	5	0	0	0	0.032383	1	4464	4464		106.68	16.313	1	8201900			15353	5177	9574	9618	15597	15597					0.12182923719603878
GVIKAVDKK	9	Unmodified	_GVIKAVDKK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.30780029296875	2	479.30821	956.601866	-1.4201	-0.00068067	1.0977	0.00052615	-0.32239	-0.00015453	479.30877821255405	16.162	0.17436	16.162	16.096	16.27	0					11	6	3	0	0	0	0.026538	1	3827	3827		112.41	35.637	1	406120			15354	5177	9574	9618	15598	15598					0.12182923719603878
GVIKAVDKK	9	Unmodified	_GVIKAVDKK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.3080749511719	2	479.30821	956.601866	-0.22574	-0.0001082	-0.12478	-5.9807E-05	-0.35052	-0.00016801	479.30808738950344	16.186	0.17789	16.186	16.085	16.263	0					11	6	3	0	0	0	0.13726	1	3824	3824		70.816	2.0294	1	455330			15355	5177	9574	9618	15599	15599					0.12182923719603878
GVIKAVDKK	9	Unmodified	_GVIKAVDKK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.30889892578125	2	479.30821	956.601866	-0.47148	-0.00022598	1.753	0.00084025	1.2816	0.00061427	479.3090184526386	16.405	0.21587	16.405	16.347	16.563	0					9	4	3	0	0	0	0.076532	1	4691	4691		85.862	16.234	1	2133300			15356	5177	9574	9618	15600	15600					0.12182923719603878
GVILGHTEPG	10	Unmodified	_GVILGHTEPG_					0	0	0			REV__ENST00000220562.8_1_8:28559161-28573151:+|nuORF	REV__ENST00000220562.8_1_8:28559161-28573151:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.1782531738281	3	327.178425	978.513445	0.63832	0.00020884	-0.91934	-0.00030079	-0.28102	-9.1943E-05	327.17808193102377	16.711	0.20981	16.711	16.62	16.83	0					8	5	2	0	0	0	0.52275	1	4576	4576		42.864	7.686	1	713740	+		15357	17888	9575	9619	15601	15601					0.023328834091330464
GVIRAHKKA	9	Unmodified	_GVIRAHKKA_					0	0	0		ENST00000473880.5_1_7:102109277-102110330:+|nuORF;LRWD1|p.L446Cfs*61|1|0.2|ENSG00000161036|chr7:102469772-102469772|C/-|frameshift_variant;ENSG00000161036|ENST00000292616|LRWD1	ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENST00000473880.5_1_7:102109277-102110330:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.2101745605469	3	327.210171	978.608683	0.52968	0.00017332	-0.58598	-0.00019174	-0.056294	-1.842E-05	327.2099989556734	13.583	0.12146	13.583	13.544	13.665	0					7	3	3	0	0	0	0.61124	1	3128	3128		19.104	8.238	1	231340			15358	5401	9576	9620	15602	15602					0.1185228139083847
GVISIGLSVN	10	Unmodified	_GVISIGLSVN_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-5|PATJ	REV__nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.78179931640625	2	479.782025	957.549496	-0.21264	-0.00010202	-0.17527	-8.4091E-05	-0.38791	-0.00018611	479.7822440523045	39.593	0.17574	39.593	39.526	39.702	0					9	7	2	0	0	0	0.55603	1	15080	15080		39.253	3.6345	1	87550	+		15359	21022	9577	9621	15603	15603					0.06902340586009359
GVISVPRQQ	9	Unmodified	_GVISVPRQQ_					0	0	0		nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.5259094238281	3	328.525936	982.555979	0.52789	0.00017343	-0.4414	-0.00014501	0.086486	2.8413E-05	328.5258658076947	15.529	0.57868	15.529	15.358	15.937	0					24	14	4	0	0	0	0.33044	1	4016	4016		47.657	3.5405	1	5178800			15360	11839	9578	9622	15604	15604					0.06400278537375925
GVIVHIIEK	9	Unmodified	_GVIVHIIEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.31622314453125	2	504.316035	1006.61752	-0.062976	-3.176E-05	0.075186	3.7918E-05	0.01221	6.1578E-06	504.31599842622006	29.306	0.40947	29.306	29.211	29.62	0					29	14	3	0	0	0	0.12239	1	9223	9223		74.255	18.751	1	248060			15361	8120	9579	9623	15605	15605					0.11447210236656247
GVIVHIIEK	9	Unmodified	_GVIVHIIEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.3164367675781	2	504.316035	1006.61752	-0.056051	-2.8267E-05	0.19498	9.8332E-05	0.13893	7.0065E-05	504.3161112574026	29.566	0.53749	29.566	29.434	29.972	0					33	13	4	0	0	0	0.034359	1	10559	10559		104.75	30.772	1	2237000			15362	8120	9579	9623	15606	15606					0.11447210236656247
GVIVHIIEK	9	Unmodified	_GVIVHIIEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.54644775390625	3	336.546449	1006.61752	0.53457	0.00017991	-0.82506	-0.00027767	-0.29049	-9.7764E-05	336.54620891450355	29.529	0.35517	29.529	29.446	29.801	0					15	7	3	0	0	0	0.5654	1	10940	10940		25.574	2.0514	1	396670			15363	8120	9579	9623	15607	15607					0.11447210236656247
GVIVHIIEK	9	Unmodified	_GVIVHIIEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.31597900390625	2	504.316035	1006.61752	-0.45119	-0.00022754	0.29353	0.00014803	-0.15766	-7.9511E-05	504.316180510149	29.542	0.30384	29.542	29.396	29.7	0					13	6	3	0	0	0	0.10915	1	10943	10943		77.318	38.065	1	346970			15364	8120	9579	9623	15608	15608					0.11447210236656247
GVKFVKSFI	9	Unmodified	_GVKFVKSFI_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.8153076171875	2	512.813128	1023.6117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.857	1	11.857	11.357	12.357	0								0	0	0	0.23459	1	2382	2382		45.952	5.3793	1				15365	7767	9580	9624	15609	15609					0.10084111724984268
GVKGGDVPK	9	Unmodified	_GVKGGDVPK_					0	0	0		RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant;nc|ENSG00000198771|Q6JBY9-2|RCSD1;ENSG00000198771|ENST00000367854|RCSD1	RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant	RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.7478332519531	2	428.747985	855.481417	0.83258	0.00035696	-2.452	-0.0010513	-1.6194	-0.00069432	428.7469639022647	15.372	0.18169	15.372	15.241	15.423	0					7	4	2	0	0	0	0.019882	1	3967	3967		122.18	22.801	1	343440			15366	7606	9581	9625	15610	15610					0.047895157259858934
GVKGGDVPK	9	Unmodified	_GVKGGDVPK_					0	0	0		RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant;nc|ENSG00000198771|Q6JBY9-2|RCSD1;ENSG00000198771|ENST00000367854|RCSD1	RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant	RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.7476806640625	2	428.747985	855.481417	-0.52518	-0.00022517	-0.3125	-0.00013399	-0.83769	-0.00035916	428.7478356024039	15.348	0.15806	15.348	15.242	15.4	0					8	3	3	0	0	0	0.013878	1	4187	4187		132.76	35.285	1	428510			15367	7606	9581	9625	15611	15611					0.047895157259858934
GVKGGDVPK	9	Unmodified	_GVKGGDVPK_					0	0	0		RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant;nc|ENSG00000198771|Q6JBY9-2|RCSD1;ENSG00000198771|ENST00000367854|RCSD1	RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant	RCSD1|p.P353L|1|0.14|ENSG00000198771|chr1:167697682-167697682|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7482604980469	2	428.747985	855.481417	0.17792	7.6283E-05	-0.024867	-1.0662E-05	0.15305	6.5621E-05	428.747923923834	15.17	0.081504	15.17	15.118	15.2	0					5	3	2	0	0	0	0.15163	1	3352	3352		67.494	6.5217	1	55961			15368	7606	9581	9625	15612	15612					0.047895157259858934
GVKHRGGRI	9	Unmodified	_GVKHRGGRI_					0	0	0			REV__ENST00000269033.7_1_17:27957016-27957265:-|nuORF	REV__ENST00000269033.7_1_17:27957016-27957265:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.203369140625	3	327.201787	978.583531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.174	1	35.174	34.674	35.674	0								0	0	0	0.4059	1	11527	11527		9.1829	0.48922	1		+		15369	18091	9582	9626	15613	15613					0.09338226588272391
GVKHRGGRI	9	Unmodified	_GVKHRGGRI_					0	0	0			REV__ENST00000269033.7_1_17:27957016-27957265:-|nuORF	REV__ENST00000269033.7_1_17:27957016-27957265:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.2016906738281	3	327.201787	978.583531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.413	1	35.413	34.913	35.913	0								0	0	0	0.3693	1	13721	13721		19.997	0.89325	1		+		15370	18091	9582	9626	15614	15614					0.09338226588272391
GVKIGVKAD	9	Unmodified	_GVKIGVKAD_					0	0	0		ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7712097167969	2	443.77146	885.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.311	1	41.311	40.811	41.811	0								0	0	0	0.27025	1	16243	16243		40.778	0	1				15371	3230	9583	9627	15615	15615					0.08102375277132978
GVKLPVNG	8	Unmodified	_GVKLPVNG_					0	0	0			REV__nc|ENSG00000169551|Q8WUE5-2|CT55	REV__nc|ENSG00000169551|Q8WUE5-2|CT55	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.23968505859375	2	392.239796	782.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.725	1	25.725	25.225	26.225	0								0	0	0	1.7419	1	8222	8222		42.474	7.2737	1		+		15372	16318	9584	9628	15616	15616					0.0651043455989111
GVKMFLAAIK	10	Unmodified	_GVKMFLAAIK_					0	0	0			REV__SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant	REV__SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.88897705078125	3	359.887817	1076.64162	3.0982	0.001115	0.11595	4.1729E-05	3.2141	0.0011567	359.88787635708997	21.214	1.0117	21.214	21.11	22.121	0					31	20	2	0	0	0	0.30252	1	6881	6881		66.962	22.585	1	5790600	+		15373	16161	9585	9629	15617	15617					0.10636727398650692
GVKPAIRVR	9	Unmodified	_GVKPAIRVR_					0	0	0			REV__ENST00000366362.3_1_12:2973410-2973858:-|nuORF	REV__ENST00000366362.3_1_12:2973410-2973858:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.3285827636719	2	498.327268	994.639983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.602	1	18.602	18.102	19.102	0								0	0	0	0.28164	1	5472	5472		38.806	1.647	1		+		15374	18581	9586	9630	15618	15618					0.14244854424941877
GVKVESEL	8	Unmodified	_GVKVESEL_					0	0	0		ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.739990234375	2	430.739825	859.465098	-0.85139	-0.00036673	0.58178	0.0002506	-0.26961	-0.00011613	430.7400482276363	29.211	0.56002	29.211	28.88	29.44	0					54	22	3	0	0	0	0.73426	1	9409	9409		29.15	29.15	1	432060			15375	5487	9587	9631	15619	15619					0.029743897692469545
GVLARVLRE	9	Unmodified	_GVLARVLRE_					0	0	0		KIFAP3|p.A178V|1|0.29|ENSG00000075945|chr1:170035538-170035538|G/A|missense_variant	KIFAP3|p.A178V|1|0.29|ENSG00000075945|chr1:170035538-170035538|G/A|missense_variant	KIFAP3|p.A178V|1|0.29|ENSG00000075945|chr1:170035538-170035538|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.8166198730469	2	506.816733	1011.61891	1.2737	0.00064552	-1.4296	-0.00072454	-0.15592	-7.9025E-05	506.81602053430726	14.146	0.21925	14.146	14.088	14.308	0					8	4	3	0	0	0	0.26904	1	3468	3468		53.351	7.3792	1	222610			15376	11258	9588	9632	15620	15620					0.11356844325405291
GVLAWVKEK	9	Unmodified	_GVLAWVKEK_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.307373046875	2	515.30821	1028.60187	0.18165	9.3608E-05	-0.60043	-0.00030941	-0.41878	-0.0002158	515.3077678651225	33.86	0.24062	33.86	33.772	34.013	0					20	9	3	0	0	0	0.38666	1	11034	11034		42.864	8.6917	1	173130			15377	1019;11415	9589	9633	15621	15621					0.08870923719587154
GVLAWVKEK	9	Unmodified	_GVLAWVKEK_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.307861328125	2	515.30821	1028.60187	0.029094	1.4992E-05	-0.16086	-8.2892E-05	-0.13176	-6.7899E-05	515.3080629250007	34.102	0.58514	34.102	33.987	34.573	0					31	15	3	0	0	0	0.019882	1	12659	12659		122.18	65.455	1	1387100			15378	1019;11415	9589	9633	15622	15622					0.08870923719587154
GVLAWVKEK	9	Unmodified	_GVLAWVKEK_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3082275390625	2	515.30821	1028.60187	-0.50063	-0.00025798	0.5968	0.00030753	0.096166	4.9555E-05	515.3084829259116	34.087	0.4309	34.087	33.981	34.412	0					25	10	4	0	0	0	0.028876	1	13115	13115		110.12	56.768	1	717970			15379	1019;11415	9589	9633	15623	15623					0.08870923719587154
GVLAWVKEK	9	Unmodified	_GVLAWVKEK_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3078002929688	2	515.30821	1028.60187	-1.5583	-0.00080299	1.6039	0.00082652	0.045665	2.3532E-05	515.3089383479563	33.886	0.22875	33.886	33.799	34.027	0					14	6	3	0	0	0	0.42902	1	11952	11952		39.253	2.0937	1	148110			15380	1019;11415	9589	9633	15624	15624					0.08870923719587154
GVLDLSTKK	9	Unmodified	_GVLDLSTKK_					0	0	0		ENSG00000178177|ENST00000635767|LCORL;nc|ENSG00000178177|Q8N3X6-3|LCORL;ENSG00000196233|ENST00000421806|LCOR;nc|ENSG00000178177|Q8N3X6|LCORL;nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR	ENSG00000178177|ENST00000635767|LCORL;ENSG00000196233|ENST00000421806|LCOR;nc|ENSG00000178177|Q8N3X6|LCORL;nc|ENSG00000196233|Q96JN0-2|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.78900146484375	2	480.78985	959.565146	-0.30817	-0.00014816	-0.1988	-9.5583E-05	-0.50697	-0.00024375	480.78943721265244	26.199	0.13718	26.199	26.137	26.274	0					6	4	2	0	0	0	0.33044	1	8203	8203		47.657	3.5405	1	101080			15381	11705;6705;7343;11661	9590	9634	15625	15625					0.0837462710304635
GVLDRMMKK	9	Unmodified	_GVLDRMMKK_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.202880859375	3	359.868428	1076.58346	0.45005	0.00016196	-0.10318	-3.7132E-05	0.34686	0.00012483	360.20281919098767	27.208	0.23335	27.208	27.125	27.358	0					14	9	2	0	0	0	0.48389	1	8346	8346		34.173	5.0025	1	84445			15382	5536	9591	9635	15626	15626					0.048227224817310343
GVLDRMMKK	9	Unmodified	_GVLDRMMKK_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.8683776855469	3	359.868428	1076.58346	0.72711	0.00026166	-1.4274	-0.00051369	-0.70032	-0.00025202	359.86812924989863	27.428	0.46886	27.428	27.293	27.762	0					33	11	5	0	0	0	0.35021	1	9567	9567		45.972	13.16	1	1757900			15383	5536	9591	9635	15627	15627					0.048227224817310343
GVLDRMMKK	9	Unmodified	_GVLDRMMKK_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3001098632812	2	539.299004	1076.58346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.237	1	27.237	26.737	27.737	0								0	0	0	0.31222	1	8657	8657		25.574	0	1				15384	5536	9591	9635	15628	15628					0.048227224817310343
GVLDRMMKK	9	Unmodified	_GVLDRMMKK_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8683166503906	3	359.868428	1076.58346	1.2445	0.00044784	-1.8567	-0.00066817	-0.61225	-0.00022033	359.86793180834525	27.349	0.57523	27.349	27.238	27.813	0					33	11	5	0	0	0	0.27249	1	9787	9787		52.937	3.4952	1	3159900			15385	5536	9591	9635	15629	15629					0.048227224817310343
GVLEKQTAI	9	Unmodified	_GVLEKQTAI_					0	0	0		SLITRK2|p.E834G|1|0.06|ENSG00000185985|chrX:145824926-145824926|A/G|missense_variant	SLITRK2|p.E834G|1|0.06|ENSG00000185985|chrX:145824926-145824926|A/G|missense_variant	SLITRK2|p.E834G|1|0.06|ENSG00000185985|chrX:145824926-145824926|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7821960449219	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.313	1	39.313	38.813	39.813	0								0	0	0	0.28996	1	12774	12774		37.159	1.5408	1				15386	22424	9592	9636	15630	15630					0.06902340585986622
GVLFAIIQF	9	Unmodified	_GVLFAIIQF_					0	0	0			REV__nc|ENSG00000116729|Q5T9L3-3|WLS	REV__nc|ENSG00000116729|Q5T9L3-3|WLS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53448486328125	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.536	1	49.536	49.036	50.036	0								0	0	0	0.36609	1	14977	14977		20.947	0	1		+		15387	14162	9593	9637	15631	15631					0.08212422833673827
GVLGGYIQK	9	Unmodified	_GVLGGYIQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7713623046875	2	467.77146	933.528367	-0.6492	-0.00030368	0.19201	8.9818E-05	-0.45719	-0.00021386	467.7713998036546	32.489	0.21191	32.489	32.331	32.543	0					10	5	3	0	0	0	0.077948	1	11926	11926		85.359	25.241	1	191820			15388	4346	9594	9638	15632	15632					0.05894375277136987
GVLGGYIQKK	10	Unmodified	_GVLGGYIQKK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.819091796875	2	531.818941	1061.62333	0.36907	0.00019628	0.61886	0.00032912	0.98793	0.0005254	531.8189785156151	26.486	0.14522	26.486	26.412	26.557	0					12	5	3	0	0	0	0.60076	1	8046	8046		34.173	2.5937	1	115230			15389	4346	9595	9639	15633	15633					0.09498308748334239
GVLGGYIQKK	10	Unmodified	_GVLGGYIQKK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8194580078125	2	531.818941	1061.62333	0.12236	6.5072E-05	1.2282	0.00065318	1.3506	0.00071825	531.8194570845917	26.711	0.23156	26.711	26.615	26.847	0					15	5	4	0	0	0	0.16018	1	9255	9255		84.916	44.137	1	996650			15390	4346	9595	9639	15634	15634					0.09498308748334239
GVLGGYIQKK	10	Unmodified	_GVLGGYIQKK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.8203735351562	2	531.818941	1061.62333	0.31702	0.0001686	0.58924	0.00031337	0.90626	0.00048197	531.8193511825659	26.497	0.091549	26.497	26.427	26.519	0					6	3	2	0	0	0	0.54197	1	8327	8327		40.778	7.9657	1	76939			15391	4346	9595	9639	15635	15635					0.09498308748334239
GVLGGYIQKK	10	Unmodified	_GVLGGYIQKK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.81982421875	2	531.818941	1061.62333	0.28823	0.00015328	0.64765	0.00034444	0.93588	0.00049772	531.8191950044476	26.753	0.21754	26.753	26.644	26.862	0					7	4	2	0	0	0	0.24256	1	9599	9599		74.255	21.318	1	748960			15392	4346	9595	9639	15636	15636					0.09498308748334239
GVLGPIINK	9	Unmodified	_GVLGPIINK_					0	0	0		ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4	ENST00000523568.1_7:102228019-102246337:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.2903747558594	2	455.789653	909.564752	0.15374	7.0072E-05	-1.3632	-0.00062135	-1.2095	-0.00055128	455.78917901119274	35.086	0.24113	35.086	34.986	35.227	0					10	7	2	0	0	0	0.16524	1	12467	12467		65.803	0	1	75816			15393	2398	9596	9640	15637	15637					0.1063525217384722
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.8326416015625	2	529.832049	1057.64954	0.45496	0.00024105	0.15939	8.4448E-05	0.61434	0.0003255	529.8321771077718	24.858	0.20441	24.858	24.783	24.987	0					15	6	3	0	0	0	0.21666	1	7394	7394		72.243	39.431	1	419750			15394	5349	9597	9641	15638	15638					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.55706787109375	3	353.557125	1057.64954	0.70878	0.0002506	-0.85645	-0.0003028	-0.14767	-5.2208E-05	353.5567914220844	25.16	0.20059	25.16	25.102	25.303	0					9	4	3	0	0	0	0.4771	1	8570	8570		45.908	11.986	1	486080			15395	5349	9597	9641	15639	15639					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8323974609375	2	529.832049	1057.64954	0.11434	6.0582E-05	0.43118	0.00022845	0.54552	0.00028903	529.8322748585663	25.189	0.28683	25.189	25.046	25.333	0					16	6	4	0	0	0	7.5041E-05	1	8561	8561		131.12	59.238	1	2355100			15396	5349	9597	9641	15640	15640					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.5572814941406	3	353.557125	1057.64954	-0.85568	-0.00030253	1.3266	0.00046901	0.47088	0.00016648	353.5575351786754	24.908	0.13697	24.908	24.836	24.973	0					7	4	2	0	0	0	0.575	1	7689	7689		38.754	9.2029	1	107040			15397	5349	9597	9641	15641	15641					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8330078125	2	529.832049	1057.64954	0.020682	1.0958E-05	0.11697	6.1976E-05	0.13766	7.2934E-05	529.8322320478716	24.908	0.13697	24.908	24.836	24.973	0					6	4	2	0	0	0	0.34233	1	7690	7690		48.602	19.452	1	78433			15398	5349	9597	9641	15642	15642					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.832275390625	2	529.832049	1057.64954	0.41374	0.00021921	0.13221	7.0048E-05	0.54595	0.00028926	529.8319346912052	24.9	0.14501	24.9	24.822	24.967	0					8	4	3	0	0	0	0.13158	1	7682	7682		83.647	46.488	1	152830			15399	5349	9597	9641	15643	15643					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8323364257812	2	529.832049	1057.64954	0.28667	0.00015189	0.26115	0.00013836	0.54782	0.00029025	529.8321787221536	25.13	0.21516	25.13	25.024	25.239	0					9	4	3	0	0	0	7.5041E-05	1	8891	8891		142.36	68.106	1	1106500			15400	5349	9597	9641	15644	15644					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.5570373535156	3	353.557125	1057.64954	-0.081417	-2.8786E-05	-0.16677	-5.8962E-05	-0.24819	-8.7748E-05	353.5569760004813	25.004	0.1488	25.004	24.906	25.055	0					5	3	2	0	0	0	0.52595	1	7879	7879		42.338	12.02	1	136480			15401	5349	9597	9641	15645	15645					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.55694580078125	3	353.557125	1057.64954	-0.05179	-1.8311E-05	-0.16096	-5.6908E-05	-0.21275	-7.5219E-05	353.5570709510095	25.068	0.1669	25.068	25.012	25.179	0					8	3	3	0	0	0	0.42065	1	8742	8742		50.034	20.483	1	471940			15402	5349	9597	9641	15646	15646					0.12302577919808755
GVLHKLDSF	9	Unmodified	_GVLHKLDSF_					0	0	0		TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1	TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant	TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.1904602050781	3	339.190553	1014.54983	0.53034	0.00017989	-0.82635	-0.00028029	-0.29601	-0.0001004	339.1903043577846	21.801	0.16595	21.801	21.692	21.858	0					6	3	2	0	0	0	0.61124	1	7294	7294		15.642	5.9362	1	416750			15403	3379	9598	9642	15647	15647					0.043137603058426066
GVLLMRLDE	9	Unmodified	_GVLLMRLDE_					0	0	0			REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2913818359375	2	523.289159	1044.56377	0.36227	0.00018957	3.6302	0.0018996	3.9924	0.0020892	523.2909073394962	17.369	0.066673	17.369	17.323	17.39	0					4	2	2	0	0	0	0.50461	1	4341	4341		31.955	4.0726	1	65275	+		15404	15563	9599	9643	15648	15648					0.04326669742613376
GVLMIHPPGA	10	Unmodified	_GVLMIHPPGA_					0	0	0		MAGEL2|p.Q666Sfs*36|2|0.5|ENSG00000254585|chr15:23645747-23645747|G/-|frameshift_variant;ENSG00000254585|ENST00000650528|MAGEL2	MAGEL2|p.Q666Sfs*36|2|0.5|ENSG00000254585|chr15:23645747-23645747|G/-|frameshift_variant	MAGEL2|p.Q666Sfs*36|2|0.5|ENSG00000254585|chr15:23645747-23645747|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2699279785156	2	496.273312	990.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.045	1	37.045	36.545	37.545	0								0	0	0	0.38459	1	14015	14015		35.201	3.2459	1				15405	8009	9600	9644	15649	15649					0.03642721779340263
GVLPPAKKT	9	Unmodified	_GVLPPAKKT_					0	0	0			REV__SFXN2|p.P265Sfs*27|1|0.05|ENSG00000156398|chr10:102733574-102733575|-/T|frameshift_variant	REV__SFXN2|p.P265Sfs*27|1|0.05|ENSG00000156398|chr10:102733574-102733575|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.7893371582031	2	455.789653	909.564752	-1.097	-0.00049998	0.25392	0.00011574	-0.84303	-0.00038425	455.78978964301695	35.113	0.25554	35.113	34.962	35.217	0					20	11	2	0	0	0	0.4966	1	11855	11855		32.812	0.85756	1	117780	+		15406	15629	9601	9645	15650	15650					0.1063525217384722
GVLPWPTPGP	10	Unmodified	_GVLPWPTPGP_					0	0	0			REV__ENST00000508453.1_1_4:108852799-108857674:+|nuORF	REV__ENST00000508453.1_1_4:108852799-108857674:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.8536376953125	3	340.855282	1019.54402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.779	1	20.779	20.279	21.279	0								0	0	0	0.41967	1	5862	5862		24.519	5.9881	1		+		15407	12661	9602	9646	15651	15651					0.0350266179417531
GVLQLGNIVFK	11	Unmodified	_GVLQLGNIVFK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.361328125	2	594.360973	1186.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.007	1	52.007	51.507	52.507	0								0	0	0	0.45674	1	19241	19241		23.523	5.2606	1				15408	2007	9603	9647	15652	15652					0.12150839845230621
GVLRPGTAL	9	Unmodified	_GVLRPGTAL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2718505859375	2	442.271627	882.528701	-0.33401	-0.00014772	-0.22598	-9.9943E-05	-0.55999	-0.00024767	442.2714752263726	31.732	0.22116	31.732	31.601	31.822	0					9	5	2	0	0	0	0.24095	1	11591	11591		56.721	3.7844	1	139580			15409	8044	9604	9648	15653	15653					0.08273794996978268
GVLRVTPCIP	10	Unmodified	_GVLRVTPCIP_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.2059631347656	3	352.207438	1053.60049	-1.9984	-0.00070385	-2.0116	-0.00070851	-4.01	-0.0014124	352.54096519399496	32.905	0.19394	32.905	32.838	33.032	0					7	5	2	0	0	0	0.73274	1	11490	11490		16.007	0	1	65168			15410	4990	9605	9649	15654	15654					0.0758296635917759
GVLSDINLK	9	Unmodified	_GVLSDINLK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;NET1|p.I346M|1|0.08|ENSG00000173848|chr10:5454959-5454959|A/G|missense_variant	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.78204345703125	2	479.782025	957.549496	0.47838	0.00022952	-0.96197	-0.00046154	-0.48359	-0.00023202	479.7816142382811	39.636	0.1748	39.636	39.535	39.71	0					11	7	2	0	0	0	0.17854	1	15085	15085		64.207	19.83	1	257710			15411	6454	9606	9650	15655	15655					0.0690234058599799
GVLSDINLK	9	Unmodified	_GVLSDINLK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;NET1|p.I346M|1|0.08|ENSG00000173848|chr10:5454959-5454959|A/G|missense_variant	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7818908691406	2	479.782025	957.549496	0.92202	0.00044237	-1.5021	-0.0007207	-0.58012	-0.00027833	479.7813064186431	39.518	0.37593	39.518	39.376	39.752	0					16	8	3	0	0	0	0.07136	1	15634	15634		87.696	27.578	1	653020			15412	6454	9606	9650	15656	15656					0.0690234058599799
GVLSDINLK	9	Unmodified	_GVLSDINLK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;NET1|p.I346M|1|0.08|ENSG00000173848|chr10:5454959-5454959|A/G|missense_variant	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7818603515625	2	479.782025	957.549496	2.3025	0.0011047	-3.2432	-0.0015561	-0.94072	-0.00045134	479.7803309090527	39.509	0.4608	39.509	39.364	39.825	0					18	10	3	0	0	0	0.10915	1	15627	15627		77.318	3.0625	1	486240			15413	6454	9606	9650	15657	15657					0.0690234058599799
GVLYGQVGAK	10	Unmodified	_GVLYGQVGAK_					0	0	0			REV__ENST00000555105.1_1_14:92497081-92506164:-|nuORF	REV__ENST00000555105.1_1_14:92497081-92506164:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	331.1904296875	3	331.190553	990.549831	-0.66752	-0.00022108	0.45514	0.00015074	-0.21238	-7.0337E-05	331.19065819058414	14.254	0.11241	14.254	14.221	14.333	0					5	3	2	0	0	0	0.4943	1	3065	3065		41.427	4.2675	1	387510	+		15414	20238	9607	9651	15658	15658					0.05417760305851971
GVLYYVEH	8	Unmodified	_GVLYYVEH_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.24786376953125	2	490.247818	978.481082	-0.47241	-0.0002316	1.4747	0.00072299	1.0023	0.00049139	490.24848058328604	14.297	0.40916	14.297	14.046	14.456	0					16	10	2	0	0	0	0.68754	1	3458	3458		35.201	1.6851	1	291730			15415	4225	9608	9652	15659	15659					-0.00901903993860742
GVMRIGLVAK	10	Unmodified	_GVMRIGLVAK_					0	0	0		ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP;ENST00000407982.6_1_9:125930502-125941310:-|nuORF	ENSG00000165209|ENST00000348403|STRBP	ENSG00000165209|ENST00000348403|STRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.551513671875	3	348.551317	1042.63212	-0.80477	-0.0002805	0.72325	0.00025209	-0.081523	-2.8415E-05	348.5517094338594	30.771	0.10186	30.771	30.713	30.815	0					6	3	2	0	0	0	0.60281	1	10135	10135		33.922	4.7516	1	61197			15416	5774	9609	9653	15660	15660					0.1125095911313565
GVMRIGLVAK	10	Unmodified	_GVMRIGLVAK_					0	0	0		ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP;ENST00000407982.6_1_9:125930502-125941310:-|nuORF	ENSG00000165209|ENST00000348403|STRBP	ENSG00000165209|ENST00000348403|STRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5513000488281	3	348.551317	1042.63212	1.4568	0.00050778	-1.3007	-0.00045335	0.15616	5.4431E-05	348.5508208088161	30.941	0.14254	30.941	30.854	30.997	0					6	3	2	0	0	0	0.27065	1	11630	11630		70.816	39.286	1	426050			15417	5774	9609	9653	15661	15661					0.1125095911313565
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3165283203125	2	515.315512	1028.61647	1.3002	0.00066999	0.12585	6.4854E-05	1.426	0.00073485	515.3157872505643	27.328	0.26017	27.328	27.249	27.509	0					19	9	3	0	0	0	0.26198	1	8404	8404		71.877	7.6702	1	272500			15418	3594	9610	9654	15662	15662					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.8789978027344	3	343.879433	1028.61647	0.2028	6.9738E-05	-0.58131	-0.0001999	-0.37851	-0.00013016	343.8792742460919	27.324	0.33928	27.324	27.244	27.583	0					28	12	4	0	0	0	0.54197	1	8390	8390		53.089	17.471	1	507420			15419	3594	9610	9654	15663	15663					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3160400390625	2	515.315512	1028.61647	0.1891	9.7447E-05	0.13685	7.0519E-05	0.32595	0.00016797	515.3156484664705	27.322	0.1881	27.322	27.244	27.432	0					15	7	3	0	0	0	0.2978	1	8398	8398		67.494	16.158	1	253330			15420	3594	9610	9654	15664	15664					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3156127929688	2	515.315512	1028.61647	1.1993	0.000618	-0.82035	-0.00042274	0.37891	0.00019526	515.3152283649985	27.586	0.43532	27.586	27.46	27.895	0					27	10	4	0	0	0	0.17315	1	9644	9644		82.75	3.0379	1	2739100			15421	3594	9610	9654	15665	15665					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.8793640136719	3	343.879433	1028.61647	0.50584	0.00017395	-1.0808	-0.00037166	-0.57494	-0.00019771	343.8791958960223	27.58	0.63333	27.58	27.448	28.081	0					36	15	4	0	0	0	0.32758	1	9637	9637		96.034	44.698	1	6958400			15422	3594	9610	9654	15666	15666					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3154907226562	2	515.315512	1028.61647	0.029454	1.5178E-05	-0.28358	-0.00014613	-0.25412	-0.00013095	515.315547543801	27.58	0.30368	27.58	27.489	27.792	0					24	7	4	0	0	0	0.34667	1	9638	9638		62.107	10.772	1	2159600			15423	3594	9610	9654	15667	15667					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.31591796875	2	515.315512	1028.61647	-0.10937	-5.636E-05	0.15768	8.1254E-05	0.048308	2.4894E-05	515.3157132300161	27.354	0.3729	27.354	27.247	27.62	0					28	13	4	0	0	0	0.12896	1	8688	8688		90.37	2.6155	1	1031400			15424	3594	9610	9654	15668	15668					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.8793029785156	3	343.879433	1028.61647	-0.75929	-0.00026111	0.041896	1.4407E-05	-0.7174	-0.0002467	343.8795285587984	27.359	0.20204	27.359	27.272	27.474	0					15	7	3	0	0	0	0.58896	1	8702	8702		56.434	22.261	1	170640			15425	3594	9610	9654	15669	15669					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3154907226562	2	515.315512	1028.61647	1.4143	0.00072883	-1.6873	-0.00086948	-0.27294	-0.00014065	515.3147860610659	27.56	0.6409	27.56	27.455	28.096	0					31	13	5	0	0	0	0.033694	1	9990	9990		115.49	26.851	1	8111000			15426	3594	9610	9654	15670	15670					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.8792724609375	3	343.879433	1028.61647	1.469	0.00050516	-2.9471	-0.0010134	-1.4781	-0.00050828	343.87875558772237	27.564	0.73623	27.564	27.405	28.141	0					38	15	5	0	0	0	0.24256	1	10008	10008		106.68	42.476	1	1942400			15427	3594	9610	9654	15671	15671					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.31591796875	2	515.315512	1028.61647	0.71471	0.0003683	0.29295	0.00015096	1.0077	0.00051926	515.3156560441652	27.378	0.33501	27.378	27.294	27.629	0					20	8	4	0	0	0	0.15878	1	8939	8939		85.161	18.732	1	605640			15428	3594	9610	9654	15672	15672					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3157958984375	2	515.315512	1028.61647	-1.555	-0.0008013	1.7071	0.00087972	0.15218	7.8421E-05	515.3165554739695	27.374	0.29709	27.374	27.279	27.576	0					18	7	4	0	0	0	0.14426	1	8932	8932		87.696	21.267	1	772330			15429	3594	9610	9654	15673	15673					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.879150390625	3	343.879433	1028.61647	-1.955	-0.00067227	1.2303	0.00042307	-0.72467	-0.0002492	343.87997289816934	27.382	0.33705	27.382	27.279	27.616	0					16	8	3	0	0	0	0.47859	1	8936	8936		68.846	31.035	1	353100			15430	3594	9610	9654	15674	15674					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3155517578125	2	515.315512	1028.61647	1.501	0.00077348	-1.4997	-0.00077283	0.0012669	6.5284E-07	515.3148304409166	27.503	0.51934	27.503	27.39	27.91	0					25	10	3	0	0	0	0.065649	1	9859	9859		104.06	19.141	1	5953600			15431	3594	9610	9654	15675	15675					0.10330672596091972
GVMRVGLVAK	10	Unmodified	_GVMRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8793640136719	3	343.879433	1028.61647	3.0268	0.0010409	-3.9062	-0.0013433	-0.87935	-0.00030239	343.87832135342177	27.534	0.87091	27.534	27.272	28.143	0					50	15	6	0	0	0	0.32758	1	9852	9852		96.034	41.257	1	6206500			15432	3594	9610	9654	15676	15676					0.10330672596091972
GVMTALIKR	9	Unmodified	_GVMTALIKR_					0	0	0		ENSG00000204390|ENST00000375654|HSPA1L;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.8021545410156	2	494.802237	987.589921	-0.756	-0.00037407	0.60165	0.0002977	-0.15435	-7.6372E-05	494.80247610132807	30.716	0.19757	30.716	30.617	30.815	0					8	4	2	0	0	0	0.14578	1	11521	11521		71.877	6.0743	1	226910			15433	7697	9611	9655	15677	15677					0.09562983704768158
GVMTLTYVL	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))GVM(Oxidation (M))TLTYVL_		GVM(1)TLTYVL		GVM(79)TLTYVL	1	0	1			REV__OR5AS1|p.F31S|1|0.32|ENSG00000181785|chr11:56030510-56030510|T/C|missense_variant	REV__OR5AS1|p.F31S|1|0.32|ENSG00000181785|chr11:56030510-56030510|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.1887512207031	3	352.187821	1053.54163	3.0393	0.0010704	-0.16708	-5.8843E-05	2.8722	0.0010116	352.18770308244007	24.518	0.30886	24.518	24.447	24.756	0					13	6	3	0	0	0	0.099922	1	8475	8475		79.451	7.5735	1	1736900	+		15434	16855	9612	9656	15678	15678		645			0.017004452742185094
GVMTPLIKR	9	Unmodified	_GVMTPLIKR_					0	0	0		ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.8099365234375	2	507.810062	1013.60557	-0.09344	-4.745E-05	0.38708	0.00019656	0.29364	0.00014911	507.81023196645356	28.404	0.23966	28.404	28.296	28.536	0					13	8	2	0	0	0	0.1424	1	8876	8876		69.628	14.123	1	168210			15435	3488	9613	9657	15679	15679					0.09931270221807154
GVMTPLIKR	9	Unmodified	_GVMTPLIKR_					0	0	0		ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8099365234375	2	507.810062	1013.60557	-0.028688	-1.4568E-05	-0.28561	-0.00014504	-0.3143	-0.0001596	507.8100295858476	28.678	0.33426	28.678	28.553	28.888	0					22	8	4	0	0	0	0.16806	1	10170	10170		65.465	10.689	1	1400500			15436	3488	9613	9657	15680	15680					0.09931270221807154
GVMTPLIKR	9	Unmodified	_GVMTPLIKR_					0	0	0		ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.81005859375	2	507.810062	1013.60557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.681	1	28.681	28.181	29.181	0								0	0	0	0.072369	1	10537	10537		79.713	15.505	1				15437	3488	9613	9657	15681	15681					0.09931270221807154
GVMTVLIKR	9	Unmodified	_GVMTVLIKR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.8177490234375	2	508.817887	1015.62122	-0.10296	-5.2388E-05	-0.10201	-5.1904E-05	-0.20497	-0.00010429	508.8179285340601	31.844	0.4022	31.844	31.771	32.173	0					42	16	4	0	0	0	0.014688	1	10245	10245		131.03	54.257	1	1041700			15438	2601	9614	9658	15682	15682					0.11403556738866882
GVMTVLIKR	9	Unmodified	_GVMTVLIKR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8177795410156	2	508.817887	1015.62122	-0.020976	-1.0673E-05	-0.36603	-0.00018624	-0.38701	-0.00019692	508.8177791719357	32.135	1.0912	32.135	31.928	33.019	0					66	27	5	0	0	0	0.014688	1	11754	11754		131.03	35.216	1	11371000			15439	2601	9614	9658	15683	15683					0.11403556738866882
GVMTVLIKR	9	Unmodified	_GVMTVLIKR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8175964355469	2	508.817887	1015.62122	-0.42119	-0.00021431	0.035502	1.8064E-05	-0.38568	-0.00019624	508.81802301409857	31.93	0.35355	31.93	31.807	32.161	0					39	14	4	0	0	0	0.19605	1	10584	10584		62.107	16.135	1	1264400			15440	2601	9614	9658	15684	15684					0.11403556738866882
GVMTVLIKR	9	Unmodified	_GVMTVLIKR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.81805419921875	2	508.817887	1015.62122	-0.39909	-0.00020306	0.079961	4.0686E-05	-0.31913	-0.00016238	508.81806097414847	32.072	0.89826	32.072	31.976	32.875	0					52	21	5	0	0	0	0.0086566	2	12142	12142;12318		143.89	56.132	1	8278000			15441	2601	9614	9658	15685;15686	15685					0.11403556738866882
GVMTVLIKR	9	Unmodified	_GVMTVLIKR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.81805419921875	2	508.817887	1015.62122	-1.8748	-0.00095393	1.3761	0.00070018	-0.49871	-0.00025375	508.81867689113824	31.883	0.22693	31.883	31.806	32.033	0					14	7	3	0	0	0	0.078509	1	11032	11032		85.161	28.44	1	176660			15442	2601	9614	9658	15687	15687					0.11403556738866882
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(74)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8156127929688	2	516.815344	1031.61614	0.041105	2.1244E-05	0.22253	0.00011501	0.26364	0.00013625	516.8154516663323	24.9	0.29309	24.9	24.726	25.019	0					17	7	3	0	0	0	0.12239	1	8447	8447		74.255	24.813	1	816670			15443	2601	9614	9659	15688	15688		115			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(77)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.8153686523438	2	516.815344	1031.61614	-0.49849	-0.00025762	0.65503	0.00033853	0.15655	8.0907E-05	516.8157429264396	24.834	0.26194	24.834	24.729	24.991	0					14	5	3	0	0	0	0.10915	1	8728	8728		77.318	10.888	1	722030			15444	2601	9614	9659	15689	15689		115			0.10159252876246683
GVMVGMGQK	9	Unmodified	_GVMVGMGQK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7301330566406	2	453.730423	905.446293	-0.34858	-0.00015816	-0.036011	-1.6339E-05	-0.38459	-0.0001745	453.7303797388514	25.612	0.16588	25.612	25.578	25.744	0					7	5	2	0	0	0	0.058689	1	7728	7728		92.191	51.618	1	108340			15445	1545;6995;2493;9697	9615	9660	15690	15690					-0.010211863978156543
GVMVGMGQK	9	Unmodified	_GVMVGMGQK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7303161621094	2	453.730423	905.446293	0.72126	0.00032726	-2.4105	-0.0010937	-1.6892	-0.00076646	453.7298817390295	25.933	0.34595	25.933	25.738	26.084	0					15	5	4	0	0	0	0.068692	1	9233	9233		88.643	30.413	1	1050200			15446	1545;6995;2493;9697	9615	9660	15691	15691					-0.010211863978156543
GVMVGMGQK	9	Unmodified	_GVMVGMGQK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.73016357421875	2	453.730423	905.446293	-2.6223	-0.0011898	2.1442	0.0009729	-0.47808	-0.00021692	453.7314927047869	25.729	0.14524	25.729	25.633	25.778	0					6	3	2	0	0	0	0.043797	1	8233	8233		97.473	34.494	1	177350			15447	1545;6995;2493;9697	9615	9660	15692	15692					-0.010211863978156543
GVMVGMGQK	9	Unmodified	_GVMVGMGQK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.7301940917969	2	453.730423	905.446293	2.5115	0.0011395	-4.2644	-0.0019349	-1.7529	-0.00079536	453.7290370108273	25.864	0.40051	25.864	25.684	26.085	0					19	6	4	0	0	0	0.043797	1	9083	9083		97.473	44.536	1	1080900			15448	1545;6995;2493;9697	9615	9660	15693	15693					-0.010211863978156543
GVMVYGIKK	9	Unmodified	_GVMVYGIKK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7914733886719	2	497.791338	993.568123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.14	1	26.14	25.64	26.64	0								0	0	0	0.13522	1	8980	8980		63.306	17.354	1				15449	2982	9616	9661	15694	15694					0.07108178956207212
GVNAIVYM	8	Unmodified	_GVNAIVYM_					0	0	0		ENST00000455168.5_1_3:5164021-5220395:+|nuORF;nc|ENSG00000134108|Q9NVJ2-2|ARL8B;ENSG00000134108|ENST00000256496|ARL8B	ENST00000455168.5_1_3:5164021-5220395:+|nuORF	ENST00000455168.5_1_3:5164021-5220395:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.7250671386719	2	433.725664	865.436775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.925	1	38.925	38.425	39.425	0								0	0	0	1.7419	1	15344	15344		39.021	3.8208	1				15450	9677	9617	9662	15695	15695					-0.0013263141170227755
GVNATAAAPPQ	11	Unmodified	_GVNATAAAPPQ_					0	0	0		ENST00000242108.8_1_7:36192946-36193138:+|nuORF	ENST00000242108.8_1_7:36192946-36193138:+|nuORF	ENST00000242108.8_1_7:36192946-36193138:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.76434326171875	2	498.759081	995.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.635	1	16.635	16.135	17.135	0								0	0	0	0.34077	1	4547	4547		46.457	1.9257	1				15451	8218	9618	9663	15696	15696					0.005676954037539872
GVNDAPALKK	10	Unmodified	_GVNDAPALKK_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1;tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.79290771484375	2	506.792924	1011.57129	-0.084986	-4.307E-05	-1.029	-0.00052149	-1.114	-0.00056456	506.79206098431195	18.956	0.18923	18.956	18.813	19.002	0					12	5	3	0	0	0	0.14151	1	4808	4808		88.177	33.401	1	206110			15452	22792;1524;257;7346	9619	9664	15697	15697					0.06597145334569632
GVNDAPALKK	10	Unmodified	_GVNDAPALKK_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1;tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.79290771484375	2	506.792924	1011.57129	-1.9379	-0.00098213	1.6449	0.00083365	-0.29298	-0.00014848	506.79374251300925	19.018	0.14569	19.018	18.915	19.061	0					8	3	3	0	0	0	0.09653	1	5085	5085		96.034	32.727	1	217210			15453	22792;1524;257;7346	9619	9664	15698	15698					0.06597145334569632
GVNDSPALKK	10	Unmodified	_GVNDSPALKK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ENSG00000075673|ENST00000381946|ATP12A;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;nc|ENSG00000075673|P54707-2|ATP12A;ENSG00000105675|ENST00000262623|ATP4A	nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000105675|ENST00000262623|ATP4A	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7907104492188	2	514.790381	1027.56621	0.14513	7.4711E-05	1.4272	0.00073471	1.5723	0.00080942	515.2926972404367	17.669	0.189	17.669	17.579	17.768	0					12	5	3	0	0	0	0.05785	1	4271	4271		106.68	37.055	1	333840			15454	1091;2383	9620	9665	15699	15699					0.05352841471949432
GVNDSPALKK	10	Unmodified	_GVNDSPALKK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ENSG00000075673|ENST00000381946|ATP12A;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;nc|ENSG00000075673|P54707-2|ATP12A;ENSG00000105675|ENST00000262623|ATP4A	nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000105675|ENST00000262623|ATP4A	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.5292053222656	3	343.529346	1027.56621	0.93867	0.00032246	-0.97244	-0.00033406	-0.033773	-1.1602E-05	343.5289761349205	18.004	0.15852	18.004	17.866	18.025	0					5	3	2	0	0	0	0.71938	1	5181	5181		37.508	8.9314	1	69201			15455	1091;2383	9620	9665	15700	15700					0.05352841471949432
GVNDSPALKK	10	Unmodified	_GVNDSPALKK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ENSG00000075673|ENST00000381946|ATP12A;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;nc|ENSG00000075673|P54707-2|ATP12A;ENSG00000105675|ENST00000262623|ATP4A	nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000105675|ENST00000262623|ATP4A	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7903442382812	2	514.790381	1027.56621	-1.5751	-0.00081087	2.7123	0.0013963	1.1372	0.0005854	515.2932612164883	17.747	0.19845	17.747	17.624	17.823	0					9	4	3	0	0	0	0.44292	1	4511	4511		51.528	12.722	1	353140			15456	1091;2383	9620	9665	15701	15701					0.05352841471949432
GVNKAQDN	8	Unmodified	_GVNKAQDN_					0	0	0		PIP|p.A25V|1|0.06|ENSG00000159763|chr7:143132190-143132190|C/T|missense_variant	PIP|p.A25V|1|0.06|ENSG00000159763|chr7:143132190-143132190|C/T|missense_variant	PIP|p.A25V|1|0.06|ENSG00000159763|chr7:143132190-143132190|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2084655761719	2	423.209224	844.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.445	1	18.445	17.945	18.945	0								0	0	0	1.7419	1	5663	5663		30.504	2.2494	1				15457	11934	9621	9666	15702	15702					-0.024531222102041284
GVNPYILKK	9	Unmodified	_GVNPYILKK_					0	0	0		nc|ENSG00000101019|Q9NVA1-3|UQCC1;nc|ENSG00000101019|Q9NVA1-5|UQCC1;nc|ENSG00000101019|Q9NVA1-4|UQCC1;ENSG00000101019|ENST00000374385|UQCC1	nc|ENSG00000101019|Q9NVA1-3|UQCC1	nc|ENSG00000101019|Q9NVA1-3|UQCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.3160400390625	2	516.316035	1030.61752	0.036613	1.8904E-05	-0.010043	-5.1855E-06	0.02657	1.3718E-05	516.3160333798655	26.623	0.32405	26.623	26.481	26.805	0					16	7	3	0	0	0	0.099922	1	9214	9214		79.451	29.426	1	491240			15458	2087	9622	9667	15703	15703					0.10343210236646883
GVNRFCLSK	9	Carbamidomethyl (C)	_GVNRFC(Carbamidomethyl (C))LSK_	GVNRFC(1)LSK		GVNRFC(55)LSK		0	1	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.8581848144531	3	360.858809	1079.5546	0.72976	0.00026334	-2.4733	-0.00089253	-1.7436	-0.00062919	360.85801180921453	24.828	0.29356	24.828	24.698	24.992	0					14	7	3	0	0	0	0.25761	1	8419	8419		54.722	25.573	1	1045300			15459	2223	9623	9668	15704	15704	90				0.01800321176961006
GVNRFCLSK	9	Carbamidomethyl (C)	_GVNRFC(Carbamidomethyl (C))LSK_	GVNRFC(1)LSK		GVNRFC(75)LSK		0	1	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.8587646484375	3	360.858809	1079.5546	-0.92853	-0.00033507	0.68808	0.0002483	-0.24044	-8.6767E-05	360.85910557441065	24.588	0.12845	24.588	24.526	24.655	0					10	4	3	0	0	0	0.11898	1	7542	7542		75.043	46.962	1	91233			15460	2223	9623	9668	15705	15705	90				0.01800321176961006
GVNRFCLSK	9	Carbamidomethyl (C)	_GVNRFC(Carbamidomethyl (C))LSK_	GVNRFC(1)LSK		GVNRFC(80)LSK		0	1	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.8587951660156	3	360.858809	1079.5546	1.4328	0.00051704	-2.0646	-0.00074504	-0.63183	-0.000228	360.8581724941196	24.822	0.41461	24.822	24.593	25.008	0					17	8	4	0	0	0	0.095583	1	8737	8737		80.455	42.643	1	1046600			15461	2223	9623	9668	15706	15706	90				0.01800321176961006
GVNRFCLSK	9	Carbamidomethyl (C)	_GVNRFC(Carbamidomethyl (C))LSK_	GVNRFC(1)LSK		GVNRFC(48)LSK		0	1	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.85888671875	3	360.858809	1079.5546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.679	1	24.679	24.179	25.179	0								0	0	0	0.22075	1	7733	7733		47.96	19.878	1				15462	2223	9623	9668	15707	15707	90				0.01800321176961006
GVNRFCLSK	9	Carbamidomethyl (C)	_GVNRFC(Carbamidomethyl (C))LSK_	GVNRFC(1)LSK		GVNRFC(80)LSK		0	1	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.85870361328125	3	360.858809	1079.5546	1.2071	0.00043558	-1.8886	-0.00068152	-0.68155	-0.00024594	360.85824519247154	24.763	0.30138	24.763	24.661	24.963	0					20	6	4	0	0	0	0.095583	1	8593	8593		80.455	46.533	1	2506400			15463	2223	9623	9668	15708	15708	90				0.01800321176961006
GVPGGAPTPL	10	Unmodified	_GVPGGAPTPL_					0	0	0			REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant	REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.2425537109375	2	433.242535	864.470518	0.19064	8.2595E-05	-0.19753	-8.5577E-05	-0.0068816	-2.9814E-06	433.24238304337666	30.026	0.65001	30.026	29.62	30.27	0					38	25	2	0	0	0	0.68218	1	9593	9593		24.203	1.1603	1	141200	+		15464	17125	9624	9669	15709	15709					0.03286113351714448
GVPPNSPG	8	Unmodified	_GVPPNSPG_					0	0	0			REV__RP1L1|p.V381Cfs*109|1|0.28|ENSG00000183638|chr8:10612957-10612957|C/-|frameshift_variant	REV__RP1L1|p.V381Cfs*109|1|0.28|ENSG00000183638|chr8:10612957-10612957|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.68487548828125	2	362.684853	723.355153	-0.071874	-2.6067E-05	-0.055649	-2.0183E-05	-0.12752	-4.6251E-05	362.6848412757344	18.801	0.19509	18.801	18.719	18.914	0					6	4	2	0	0	0	0.8006	1	5713	5713		20.482	0	1	177050	+		15465	16944	9625	9670	15710	15710					-0.01758990779285341
GVPTPIPL	8	Unmodified	_GVPTPIPL_					0	0	0			REV__ENST00000486828.6_1_5:176910647-176917003:-|nuORF	REV__ENST00000486828.6_1_5:176910647-176917003:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	265.16461181640625	3	265.165457	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.568	1	48.568	48.068	49.068	0								0	0	0	1.7419	1	17652	17652		12.207	0.69583	1		+		15466	19669	9626	9671	15711	15711					0.07000202845415515
GVPVWSALFD	10	Unmodified	_GVPVWSALFD_					0	0	0			REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7821044921875	2	545.782025	1089.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.724	1	45.724	45.224	46.224	0								0	0	0	0.4201	1	17662	17662		17.365	0	1		+		15467	12552	9627	9672	15712	15712					0.008303405860033308
GVQFGCSAPK	10	Unmodified	_GVQFGCSAPK_					0	0	0		ENST00000578711.1_1_17:7126890-7127154:+|nuORF	ENST00000578711.1_1_17:7126890-7127154:+|nuORF	ENST00000578711.1_1_17:7126890-7127154:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.24261474609375	2	497.244752	992.474951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.997	1	11.997	11.497	12.497	0								0	0	0	0.35072	1	2448	2448		42.864	0.46813	1				15468	10852	9628	9673	15713	15713					-0.02158745497035852
GVQGRTRAKKR	11	Unmodified	_GVQGRTRAKKR_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000007350	REV__CON__ENSEMBL:ENSBTAP00000007350	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.5942077636719	3	419.593455	1255.75853	1.0546	0.00044251	0.84364	0.00035399	1.8983	0.00079649	419.5937395387345	32.111	0.57022	32.111	31.952	32.523	0					22	11	3	0	0	0	0.45905	1	12087	12087		47.228	47.228	1	670550	+	+	15469	12574	9629	9674	15714	15714					0.14088601662638212
GVQLSITKK	9	Unmodified	_GVQLSITKK_					0	0	0		ENST00000357182.8_1_1:35496249-35497473:-|nuORF;ENST00000373333.1_1_1:35496252-35497272:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.30523681640625	2	487.305667	972.596781	-0.0026411	-1.287E-06	-0.74614	-0.0003636	-0.74878	-0.00036488	487.3052555774651	23.105	0.15598	23.105	23.027	23.183	0					10	5	3	0	0	0	0.085655	1	6629	6629		82.75	23.969	1	293190			15470	8818	9630	9675	15715	15715					0.10938619856972309
GVQLSITKK	9	Unmodified	_GVQLSITKK_					0	0	0		ENST00000357182.8_1_1:35496249-35497473:-|nuORF;ENST00000373333.1_1_1:35496252-35497272:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.3052673339844	2	487.305667	972.596781	-0.33923	-0.00016531	-0.45701	-0.0002227	-0.79624	-0.00038801	487.3054649548229	23.442	0.26386	23.442	23.34	23.604	0					13	6	3	0	0	0	0.0080613	1	7767	7767		145.16	60.24	1	1646800			15471	8818	9630	9675	15716	15716					0.10938619856972309
GVQLSITKK	9	Unmodified	_GVQLSITKK_					0	0	0		ENST00000357182.8_1_1:35496249-35497473:-|nuORF;ENST00000373333.1_1_1:35496252-35497272:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.30511474609375	2	487.305667	972.596781	-2.9114	-0.0014187	2.4162	0.0011774	-0.49516	-0.0002413	487.3067964500851	23.195	0.18674	23.195	23.11	23.297	0					9	4	3	0	0	0	0.056004	1	7048	7048		93.143	28.936	1	299240			15472	8818	9630	9675	15717	15717					0.10938619856972309
GVQPLAGPTGP	11	Unmodified	_GVQPLAGPTGP_					0	0	0			REV__ENST00000382214.7_1_20:388725-389346:+|nuORF	REV__ENST00000382214.7_1_20:388725-389346:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.8502502441406	3	331.850308	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.957	1	16.957	16.457	17.457	0								0	0	0	0.45614	1	4802	4802		16.53	0	1		+		15473	18794	9631	9676	15718	15718					0.03253169926188093
GVRDITSGR	9	Unmodified	_GVRDITSGR_					0	0	0		ENST00000506237.5_1_5:32531910-32591672:+|nuORF	ENST00000506237.5_1_5:32531910-32591672:+|nuORF	ENST00000506237.5_1_5:32531910-32591672:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7644958496094	2	480.764697	959.514842	0.42663	0.00020511	-0.85542	-0.00041126	-0.4288	-0.00020615	480.7643129785463	15.999	0.14075	15.999	15.909	16.049	0					5	3	2	0	0	0	0.4966	1	4257	4257		32.812	2.4947	1	374550			15474	10191	9632	9677	15719	15719					0.03346517497891455
GVRDTRKR	8	Unmodified	_GVRDTRKR_					0	0	0		ENST00000584250.1_2_18:21594410-21594599:+|nuORF	ENST00000584250.1_2_18:21594410-21594599:+|nuORF	ENST00000584250.1_2_18:21594410-21594599:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.8658142089844	3	329.865063	986.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.674	1	26.674	26.174	27.174	0								0	0	0	1.7419	1	9575	9575		20.947	3.582	1				15475	10886	9633	9678	15720	15720					0.07953618863041356
GVRGSAVGA	9	Unmodified	_GVRGSAVGA_					0	0	0			REV__ENST00000373019.4_1_1:38455660-38455924:-|nuORF	REV__ENST00000373019.4_1_1:38455660-38455924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	387.2167053222656	2	387.216852	772.419151	-1.1914	-0.00046133	0.72599	0.00028112	-0.4654	-0.00018021	387.21715973882635	18.759	0.095095	18.759	18.707	18.802	0					5	3	2	0	0	0	0.45358	1	4970	4970		37.159	5.2042	1	45895	+		15476	18677	9634	9679	15721	15721					0.02383789377654466
GVRNKLRH	8	Unmodified	_GVRNKLRH_					0	0	0			REV__ENST00000319406.8_1_2:30670199-30682472:+|nuORF	REV__ENST00000319406.8_1_2:30670199-30682472:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.201171875	3	327.201787	978.583531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.716	1	38.716	38.216	39.216	0								0	0	0	1.7419	1	12617	12617		7.1934	0.45781	1		+		15477	18322	9635	9680	15722	15722					0.09338226588261023
GVRPGGNF	8	Unmodified	_GVRPGGNF_					0	0	0		ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.21295166015625	2	402.211569	802.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.837	1	18.837	18.337	19.337	0								0	0	0	1.7419	1	4997	4997		26.796	2.5934	1				15478	2351	9636	9681	15723	15723					-0.0005219327676968533
GVRSHLTLQ	9	Unmodified	_GVRSHLTLQ_					0	0	0			REV__ENST00000373001.3_1_1:39304950-39305250:-|nuORF	REV__ENST00000373001.3_1_1:39304950-39305250:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.52960205078125	3	337.529569	1009.56688	1.5937	0.00053791	-1.2094	-0.00040822	0.38423	0.00012969	337.5291607444477	13.054	0.15298	13.054	13.006	13.159	0					5	3	2	0	0	0	0.40353	1	2947	2947		41.427	0	1	175280	+		15479	18676	9637	9682	15724	15724					0.06247680911644693
GVRSREVPI	9	Unmodified	_GVRSREVPI_					0	0	0			REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.2018737792969	3	338.201452	1011.58253	0.53194	0.0001799	0.32924	0.00011135	0.86118	0.00029125	338.2018296695354	22.882	0.41666	22.882	22.628	23.044	0					19	8	4	0	0	0	0.57706	1	7822	7822		18.262	0	1	194140	+		15480	13817	9638	9683	15725	15725					0.0771996742871579
GVRVICPV	8	Unmodified	_GVRVICPV_					0	0	0		ENST00000359890.7_2_14:23370092-23370311:-|nuORF	ENST00000359890.7_2_14:23370092-23370311:-|nuORF	ENST00000359890.7_2_14:23370092-23370311:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.75140380859375	2	421.749473	841.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.249	1	45.249	44.749	45.749	0								0	0	0	1.7419	1	18123	18123		26.796	0	1				15481	8855	9639	9684	15726	15726					0.057310675791541144
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2449951171875	2	425.245078	848.475603	0.3094	0.00013157	-0.96932	-0.0004122	-0.65992	-0.00028063	425.2446405336479	29.789	0.18415	29.789	29.694	29.879	0					13	8	2	0	0	0	0.025517	1	9423	9423		113.41	53.118	1	137550			15482	331	9640	9685	15727	15727					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2450866699219	2	425.245078	848.475603	-0.21973	-9.3439E-05	-0.11348	-4.8256E-05	-0.33321	-0.0001417	425.244937191117	29.789	0.15961	29.789	29.708	29.868	0					12	7	2	0	0	0	0.33044	1	9430	9430		47.657	8.8512	1	52157			15483	331	9640	9685	15728	15728					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.24493408203125	2	425.245078	848.475603	0.92349	0.00039271	-1.8093	-0.0007694	-0.88583	-0.00037669	425.2444263075801	30.088	0.28401	30.088	29.972	30.256	0					21	7	4	0	0	0	0.0073253	1	10790	10790		148.04	65.802	1	923890			15484	331	9640	9685	15729	15729					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.244873046875	2	425.245078	848.475603	-0.75307	-0.00032024	0.30593	0.0001301	-0.44714	-0.00019014	425.24525239908445	30.085	0.24509	30.085	29.961	30.206	0					13	6	3	0	0	0	0.012915	1	10799	10799		134.81	72.703	1	462350			15485	331	9640	9685	15730	15730					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.2444763183594	2	425.245078	848.475603	-1.0751	-0.00045717	0.6159	0.00026191	-0.45917	-0.00019526	425.24542222543937	29.812	0.29879	29.812	29.725	30.024	0					25	11	4	0	0	0	0.1115	1	9722	9722		76.774	30.822	1	312660			15486	331	9640	9685	15731	15731					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2448425292969	2	425.245078	848.475603	0.89897	0.00038228	-1.5693	-0.00066734	-0.67034	-0.00028506	425.24445806358256	30.05	0.3684	30.05	29.949	30.317	0					25	8	5	0	0	0	0.012915	1	11203	11203		134.81	47.056	1	2456200			15487	331	9640	9685	15732	15732					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2446594238281	2	425.245078	848.475603	-0.028711	-1.2209E-05	-0.37066	-0.00015762	-0.39938	-0.00016983	425.24486378318784	29.849	0.26023	29.849	29.726	29.986	0					15	7	3	0	0	0	0.019882	1	10082	10082		122.18	45.329	1	219000			15488	331	9640	9685	15733	15733					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;BZW1|p.L189P|1|0.05|ENSG00000082153|chr2:200818001-200818001|T/C|missense_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.24493408203125	2	425.245078	848.475603	-0.37787	-0.00016069	-0.28366	-0.00012062	-0.66153	-0.00028131	425.2450104879707	30.005	0.16892	30.005	29.896	30.065	0					6	3	2	0	0	0	0.30951	1	11070	11070		49.442	6.9671	1	137790			15489	331	9640	9685	15734	15734					0.04530417214323279
GVSAAIYSK	9	Unmodified	_GVSAAIYSK_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2473449707031	2	448.247818	894.481082	0.61639	0.00027629	-1.3726	-0.00061524	-0.75617	-0.00033895	448.24726876328515	25.338	0.22385	25.338	25.242	25.466	0					8	5	2	0	0	0	0.11898	1	8658	8658		75.043	19.539	1	237360			15490	3304	9641	9686	15735	15735					0.029620960061379265
GVSAAIYSK	9	Unmodified	_GVSAAIYSK_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2478942871094	2	448.247818	894.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.16	1	25.16	24.66	25.66	0								0	0	0	0.17415	1	7958	7958		54.722	12.248	1				15491	3304	9641	9686	15736	15736					0.029620960061379265
GVSAATFLK	9	Unmodified	_GVSAATFLK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.25787353515625	2	447.258185	892.501818	0.12621	5.6448E-05	0.26112	0.00011679	0.38733	0.00017324	447.25829150103993	35.789	0.24356	35.789	35.722	35.966	0					20	12	2	0	0	0	0.35021	1	11721	11721		45.972	14.017	1	140940			15492	6998	9642	9687	15737	15737					0.051266863857904355
GVSAATFLK	9	Unmodified	_GVSAATFLK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.2576904296875	2	447.258185	892.501818	-1.1723	-0.00052433	0.50162	0.00022435	-0.67069	-0.00029997	447.2583556730204	35.863	0.2585	35.863	35.773	36.031	0					25	12	3	0	0	0	0.021961	1	12125	12125		118.74	52.94	1	470580			15493	6998	9642	9687	15738	15738					0.051266863857904355
GVSAATFLK	9	Unmodified	_GVSAATFLK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2577209472656	2	447.258185	892.501818	-0.39138	-0.00017505	-0.18383	-8.2221E-05	-0.57521	-0.00025727	447.25808971033655	35.844	0.20903	35.844	35.781	35.99	0					19	8	3	0	0	0	0.048471	1	12787	12787		95.815	44.48	1	418080			15494	6998	9642	9687	15739	15739					0.051266863857904355
GVSAATFLK	9	Unmodified	_GVSAATFLK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2579345703125	2	447.258185	892.501818	-0.4265	-0.00019075	0.035099	1.5698E-05	-0.3914	-0.00017506	447.25812502775824	36.024	0.26785	36.024	35.881	36.149	0					10	5	3	0	0	0	0.037924	1	13955	13955		101.25	55.301	1	262810			15495	6998	9642	9687	15740	15740					0.051266863857904355
GVSAWLVQI	9	Unmodified	_GVSAWLVQI_					0	0	0			REV__ENST00000536241.1_1_12:6959960-6960418:-|nuORF	REV__ENST00000536241.1_1_12:6959960-6960418:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.77935791015625	2	486.779285	971.544017	-0.54614	-0.00026585	0.9837	0.00047884	0.43756	0.000213	486.77972613184716	37.952	0.85281	37.952	37.657	38.51	0					27	18	2	0	0	0	0.30951	1	14805	14805		49.442	3.4896	1	185470	+		15496	20104	9643	9688	15741	15741					0.05710661794171301
GVSEVNGMMK	10	Unmodified	_GVSEVNGMMK_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2495727539062	2	526.249177	1050.4838	1.1977	0.00063031	0.57546	0.00030283	1.7732	0.00093314	526.2492895357805	27.915	0.095604	27.915	27.828	27.923	0					4	2	2	0	0	0	0.38179	1	9185	9185		58.246	18.993	1	84397			15497	251	9644	9689	15742	15742					-0.039421399228558585
GVSGKPGPL	9	Unmodified	_GVSGKPGPL_					0	0	0			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.23724365234375	2	406.237253	810.459953	-2.2807	-0.00092653	2.2523	0.00091497	-0.028452	-1.1558E-05	406.2382158728094	31.162	0.20712	31.162	31.059	31.266	0					10	6	2	0	0	0	0.2873	1	10689	10689		51.335	7.2187	1	260400	+		15498	17121	9645	9690	15743	15743					0.047141306972775965
GVSGTVATLIL	11	Unmodified	_GVSGTVATLIL_					0	0	0			REV__ENSG00000064115|ENST00000343028|TM7SF3	REV__ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	344.2098083496094	3	344.209613	1029.60701	-0.062864	-2.1639E-05	0.060007	2.0655E-05	-0.0028575	-9.8358E-07	344.20967687374485	24.96	0.15223	24.96	24.86	25.012	0					6	3	2	0	0	0	0.35352	1	7854	7854		56.632	12.255	1	145720	+		15499	13100	9646	9691	15744	15744					0.09339182791586609
GVSKPIGVSK	10	Unmodified	_GVSKPIGVSK_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B;ZNF512B|p.P197H|1|0.6|ENSG00000196700|chr20:63966585-63966585|G/T|missense_variant	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2978515625	2	486.297842	970.581131	0.3672	0.00017857	0.1465	7.1243E-05	0.5137	0.00024981	486.29789230321734	18.407	0.10825	18.407	18.353	18.461	0					4	2	2	0	0	0	0.041183	1	5389	5389		112.3	39.416	1	91527			15500	7393	9647	9692	15745	15745					0.09466333339946686
GVSLAVHR	8	Unmodified	_GVSLAVHR_					0	0	0			REV__ENSG00000170584|ENST00000302764|NUDCD2	REV__ENSG00000170584|ENST00000302764|NUDCD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.74859619140625	2	419.748319	837.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.78	1	14.78	14.28	15.28	0								0	0	0	1.7419	1	3675	3675		26.796	0	1		+		15501	16369	9648	9693	15746	15746					0.056843551657038915
GVSLMTVPK	9	Unmodified	_GVSLMTVPK_					0	0	0		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7679138183594	2	466.267696	930.520839	-0.43786	-0.00020416	-0.82023	-0.00038245	-1.2581	-0.00058661	466.2674076501745	34.511	0.2467	34.511	34.415	34.662	0					30	10	4	0	0	0	0.078509	1	11263	11263		85.161	16.374	1	762670			15502	8422	9649	9694	15747	15747					0.05279899685194778
GVSLMTVPK	9	Unmodified	_GVSLMTVPK_					0	0	0		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2673034667969	2	466.267696	930.520839	-0.66837	-0.00031164	-0.25161	-0.00011732	-0.91999	-0.00042896	466.2677122724962	34.769	0.39237	34.769	34.641	35.033	0					30	10	4	0	0	0	0.01873	1	12967	12967		124.08	47.306	1	2974600			15503	8422	9649	9694	15748	15748					0.05279899685194778
GVSLMTVPK	9	Unmodified	_GVSLMTVPK_					0	0	0		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.26788330078125	2	466.267696	930.520839	-1.1609	-0.0005413	0.87728	0.00040905	-0.28363	-0.00013225	466.2680938514486	34.572	0.21058	34.572	34.486	34.697	0					21	9	3	0	0	0	0.078509	1	11658	11658		85.161	8.3867	1	259190			15504	8422	9649	9694	15749	15749					0.05279899685194778
GVSLMTVPK	9	Unmodified	_GVSLMTVPK_					0	0	0		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.26739501953125	2	466.267696	930.520839	-1.1811	-0.00055071	0.43397	0.00020234	-0.74715	-0.00034837	466.267929737121	34.754	0.28875	34.754	34.67	34.959	0					24	8	4	0	0	0	0.012231	1	13412	13412		136.27	34.667	1	1531200			15505	8422	9649	9694	15750	15750					0.05279899685194778
GVSLMTVPK	9	Unmodified	_GVSLMTVPK_					0	0	0		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2663269042969	2	466.267696	930.520839	-2.2625	-0.0010549	1.2271	0.00057214	-1.0354	-0.00048277	466.26817669895644	34.528	0.29445	34.528	34.455	34.75	0					14	8	2	0	0	0	0.063171	1	12216	12216		90.601	23.107	1	447520			15506	8422	9649	9694	15751	15751					0.05279899685194778
GVSLMTVPK	9	Oxidation (M)	_GVSLM(Oxidation (M))TVPK_		GVSLM(1)TVPK		GVSLM(93)TVPK	0	0	1		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2647705078125	2	474.265153	946.515753	-0.48737	-0.00023114	-0.14092	-6.6831E-05	-0.62828	-0.00029797	474.26509075534125	28.243	0.29881	28.243	28.109	28.407	0					12	7	2	0	0	0	0.056004	1	10007	10007		93.143	16.297	1	269700			15507	8422	9649	9695	15752	15752		339			0.04035595822585947
GVSPTSLGPS	10	Unmodified	_GVSPTSLGPS_					0	0	0		ENST00000468969.6_1_9:130536689-130540970:-|nuORF	ENST00000468969.6_1_9:130536689-130540970:-|nuORF	ENST00000468969.6_1_9:130536689-130540970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.23529052734375	2	451.234907	900.455261	0.0015272	6.8913E-07	-0.13255	-5.981E-05	-0.13102	-5.9121E-05	451.2349649220368	16.618	0.22693	16.618	16.503	16.73	0					12	7	2	0	0	0	0.60076	1	3797	3797		34.173	4.331	1	42921			15508	9819	9650	9696	15753	15753					0.001052017638585312
GVSQAMQQK	9	Unmodified	_GVSQAMQQK_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.74725341796875	2	488.747659	975.480765	-0.025014	-1.2226E-05	-1.0711	-0.00052351	-1.0961	-0.00053573	488.7474020338071	18.445	0.11047	18.445	18.392	18.503	0					10	4	3	0	0	0	0.095583	1	4592	4592		80.455	5.4113	1	190720			15509	5894	9651	9697	15754	15754					-0.007956469853638737
GVSQAMQQK	9	Unmodified	_GVSQAMQQK_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7474060058594	2	488.747659	975.480765	-0.40755	-0.00019919	-0.33516	-0.00016381	-0.74271	-0.000363	488.7477584398525	18.759	0.13161	18.759	18.671	18.803	0					11	3	4	0	0	0	0.015496	1	5549	5549		129.42	41.667	1	933200			15510	5894	9651	9697	15755	15755					-0.007956469853638737
GVSQAMQQK	9	Unmodified	_GVSQAMQQK_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.74774169921875	2	488.747659	975.480765	-1.0977	-0.0005365	1.44	0.00070379	0.34228	0.00016729	488.7480384864808	18.462	0.09445	18.462	18.402	18.497	0					5	3	2	0	0	0	0.07136	1	4830	4830		87.696	36.361	1	105360			15511	5894	9651	9697	15756	15756					-0.007956469853638737
GVSQAMQQK	9	Unmodified	_GVSQAMQQK_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7473449707031	2	488.747659	975.480765	-0.71118	-0.00034759	-0.0039259	-1.9188E-06	-0.7151	-0.0003495	488.747686686063	18.685	0.16714	18.685	18.578	18.745	0					5	3	2	0	0	0	0.047855	1	5788	5788		96.034	10.873	1	618830			15512	5894	9651	9697	15757	15757					-0.007956469853638737
GVSRITEL	8	Unmodified	_GVSRITEL_					0	0	0			REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.25054931640625	2	437.753267	873.491981	0.6107	0.00026733	-3.9928	-0.0017479	-3.3821	-0.0014805	437.75262135076724	23.973	0.54078	23.973	23.647	24.188	0					24	12	3	0	0	0	0.59411	1	7979	7979		50.025	2.1089	1	803390	+		15513	15408	9652	9698	15758	15758					0.05017498380402685
GVSRSHKGV	9	Unmodified	_GVSRSHKGV_					0	0	0		OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant	OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant	OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.76171875	2	463.761958	925.509363	-0.14249	-6.6082E-05	-0.52943	-0.00024553	-0.67192	-0.00031161	463.7617375303467	14.05	0.59701	14.05	13.84	14.437	0					28	12	4	0	0	0	0.099922	1	3502	3502		79.451	5.4763	1	3436900			15514	11871	9653	9699	15759	15759					0.043628387060948626
GVSSVRLHR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GVSSVRLHR_					1	0	0			REV__ENST00000577539.1_1_18:9950385-9950580:+|nuORF	REV__ENST00000577539.1_1_18:9950385-9950580:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.8030395507812	2	526.801614	1051.58868	1.6277	0.00085748	1.1064	0.00058283	2.7341	0.0014403	526.8021988791482	38.535	0.34445	38.535	38.35	38.695	0					11	7	2	0	0	0	0.17854	1	15170	15170		64.207	9.431	1	438090	+		15515	20428	9654	9700	15760	15760					0.06494485660232385
GVSTACLM	8	Unmodified	_GVSTACLM_					0	0	0			REV__ENST00000411788.5_1_7:80535172-80545997:-|nuORF	REV__ENST00000411788.5_1_7:80535172-80545997:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.1823425292969	2	391.182774	780.350996	0.43534	0.0001703	-1.8744	-0.00073323	-1.4391	-0.00056293	391.1821471309493	17.293	0.85583	17.293	17.183	18.038	0					44	17	5	0	0	0	0.67475	1	5095	5095		37.028	0	1	25755000	+		15516	19007	9655	9701	15761	15761					-0.04796539588869564
GVSTAKNI	8	Unmodified	_GVSTAKNI_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN;nc|ENSG00000166454|O43313-2|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.2267150878906	2	395.226885	788.439217	-0.23282	-9.2016E-05	0.1783	7.0471E-05	-0.054513	-2.1545E-05	395.2269082314713	34.688	0.21088	34.688	34.561	34.772	0					9	5	2	0	0	0	0.67394	1	12932	12932		37.159	0	1	173850			15517	5906	9656	9702	15762	15762					0.03653540317623083
GVSTNISTK	9	Unmodified	_GVSTNISTK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.F410Lfs*77|1|0.19|ENSG00000110713|chr11:3753404-3753404|A/-|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.74774169921875	2	453.748182	905.481811	-1.1911	-0.00054045	0.34329	0.00015577	-0.84778	-0.00038468	453.74822915866315	19.98	0.13063	19.98	19.906	20.037	0					8	4	2	0	0	0	0.28897	1	5513	5513		51.193	8.3284	1	130740			15518	2636	9657	9703	15763	15763					0.02528890655196392
GVSTNISTK	9	Unmodified	_GVSTNISTK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.F410Lfs*77|1|0.19|ENSG00000110713|chr11:3753404-3753404|A/-|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.74786376953125	2	453.748182	905.481811	0.026908	1.2209E-05	-0.7702	-0.00034947	-0.74329	-0.00033727	453.7477491508653	20.014	0.097126	20.014	19.964	20.062	0					4	2	2	0	0	0	0.12834	1	5563	5563		72.879	23.343	1	67192			15519	2636	9657	9703	15764	15764					0.02528890655196392
GVSTNISTK	9	Unmodified	_GVSTNISTK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.F410Lfs*77|1|0.19|ENSG00000110713|chr11:3753404-3753404|A/-|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.74774169921875	2	453.748182	905.481811	-0.4177	-0.00018953	-0.076604	-3.4759E-05	-0.4943	-0.00022429	453.7479017891885	20.202	0.26518	20.202	19.995	20.26	0					7	5	2	0	0	0	0.46194	1	6392	6392		36.447	2.9538	1	191260			15520	2636	9657	9703	15765	15765					0.02528890655196392
GVSTNISTK	9	Unmodified	_GVSTNISTK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.F410Lfs*77|1|0.19|ENSG00000110713|chr11:3753404-3753404|A/-|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.74786376953125	2	453.748182	905.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.208	1	20.208	19.708	20.708	0								0	0	0	0.21633	1	6381	6381		48.602	2.6496	1				15521	2636	9657	9703	15766	15766					0.02528890655196392
GVSTVQKAK	9	Unmodified	_GVSTVQKAK_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.27410888671875	2	459.274367	916.53418	-0.75114	-0.00034498	0.14801	6.7975E-05	-0.60314	-0.00027701	459.27442479959666	13.729	0.64217	13.729	13.625	14.267	0					27	13	5	0	0	0	0.012231	1	3414	3414		136.27	37.639	1	11459000			15522	5387	9658	9704	15767	15767					0.07257473788797597
GVSVNVRSL	9	Unmodified	_GVSVNVRSL_					0	0	0			REV__nc|ENSG00000163093|Q8N3I7-2|BBS5	REV__nc|ENSG00000163093|Q8N3I7-2|BBS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7718200683594	2	465.771991	929.529429	-0.17359	-8.0854E-05	0.073999	3.4467E-05	-0.099593	-4.6388E-05	465.77195265394806	17.842	0.18501	17.842	17.706	17.891	0					6	4	2	0	0	0	0.39215	1	4544	4544		42.396	0	1	102450	+		15523	15860	9659	9705	15768	15768					0.06184589646045424
GVSVVGGF	8	Unmodified	_GVSVVGGF_					0	0	0		ENSG00000154814|ENST00000285083|OXNAD1;OXNAD1|p.S112P|1|0.18|ENSG00000154814|chr3:16294899-16294899|T/C|missense_variant;ENST00000442255.5_1_3:16313687-16345066:+|nuORF	ENSG00000154814|ENST00000285083|OXNAD1	ENSG00000154814|ENST00000285083|OXNAD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	241.13584899902344	3	241.134156	720.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.248	1	48.248	47.748	48.748	0								0	0	0	1.7419	1	19188	19188		12.959	0	1				15524	5105	9660	9706	15769	15769					0.00926483743148765
GVSWAKAAPAA	11	Unmodified	_GVSWAKAAPAA_					0	0	0			REV__ENST00000495703.5_1_1:45806075-45806195:+|nuORF	REV__ENST00000495703.5_1_1:45806075-45806195:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.803955078125	2	514.779816	1027.54508	1.4958	0.00077001	1.7014	0.00087583	3.1972	0.0016458	514.7801945509494	18.401	0.21509	18.401	18.206	18.421	0					11	4	4	0	0	0	0.58789	1	5493	5493		37.812	2.1932	1	315130	+		15525	19763	9661	9707	15770	15770					0.03240876163067696
GVSYAHILQAV	11	Unmodified	_GVSYAHILQAV_					0	0	0		nc|ENSG00000262980|Q8NGH6|OR52L2P;ENSG00000183313|ENST00000332249|OR52L1	nc|ENSG00000262980|Q8NGH6|OR52L2P	nc|ENSG00000262980|Q8NGH6|OR52L2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	386.5484619140625	3	386.548629	1156.62406	-0.14687	-5.6774E-05	-0.015535	-6.0051E-06	-0.16241	-6.2779E-05	386.54861760172895	24.13	0.23952	24.13	24.035	24.274	0					14	5	4	0	0	0	0.77007	1	7466	7466		18.531	0	1	508920			15526	6952	9662	9708	15771	15771					0.05201103397371298
GVTALACGMIA	11	Unmodified	_GVTALACGMIA_					0	0	0		ENST00000451892.1_1_1:240307039-240307453:-|nuORF;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	ENST00000451892.1_1_1:240307039-240307453:-|nuORF	ENST00000451892.1_1_1:240307039-240307453:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7566223144531	2	503.756638	1005.49872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.052	1	26.052	25.552	26.552	0								0	0	0	0.20109	1	9278	9278		63.306	4.5243	1				15527	9656	9663	9709	15772	15772					-0.0038064805486328623
GVTDVVITR	9	Unmodified	_GVTDVVITR_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.279296875	2	480.279649	958.544745	-2.9249	-0.0014048	2.2632	0.001087	-0.66168	-0.00031779	480.28060515289536	31.306	0.17566	31.306	31.257	31.433	0					6	4	2	0	0	0	0.070005	1	10767	10767		88.177	16.299	1	105120			15528	6851	9664	9710	15773	15773					0.06381456443227762
GVTDVVITR	9	Unmodified	_GVTDVVITR_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.27960205078125	2	480.279649	958.544745	2.3159	0.0011123	-2.5722	-0.0012354	-0.25636	-0.00012313	480.27843349715596	31.496	0.21579	31.496	31.386	31.602	0					10	4	3	0	0	0	0.022525	1	11790	11790		117.81	35.571	1	729770			15529	6851	9664	9710	15774	15774					0.06381456443227762
GVTDWVDR	8	Unmodified	_GVTDWVDR_					0	0	0			REV__KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	REV__KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7317199707031	2	474.232699	946.450845	-0.46336	-0.00021974	1.474	0.00069901	1.0106	0.00047927	474.23430182607933	21.679	0.48069	21.679	21.39	21.871	0					19	11	3	0	0	0	0.54629	1	6269	6269		55.504	6.0627	1	513730	+		15530	14543	9665	9711	15775	15775					-0.0245226265905103
GVTPPAGTAA	10	Unmodified	_GVTPPAGTAA_					0	0	0		EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant	EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.2238464355469	2	421.224342	840.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.454	1	16.454	15.954	16.954	0								0	0	0	0.38797	1	4462	4462		34.173	1.3601	1				15531	895	9666	9712	15776	15776					0.0075323645500020575
GVTRVTIRK	9	Unmodified	_GVTRVTIRK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.8890380859375	3	343.889097	1028.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.644	1	17.644	17.144	18.144	0								0	0	0	0.023427	1	4248	4248		99.013	23.97	1				15532	7376	9667	9713	15777	15777					0.13228533216761207
GVTRVTIRK	9	Unmodified	_GVTRVTIRK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.88909912109375	3	343.889097	1028.64546	-0.75911	-0.00026105	0.36802	0.00012656	-0.39109	-0.00013449	343.8892699388846	17.697	0.20272	17.697	17.598	17.801	0					11	6	3	0	0	0	0.18416	1	4475	4475		63.534	19.417	1	643280			15533	7376	9667	9713	15778	15778					0.13228533216761207
GVTRVTIRK	9	Unmodified	_GVTRVTIRK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.8890075683594	3	343.889097	1028.64546	1.4688	0.00050511	-2.1075	-0.00072474	-0.63866	-0.00021963	343.88836656518237	17.947	0.57436	17.947	17.836	18.411	0					23	11	3	0	0	0	0.11411	1	5407	5407		76.17	24.977	1	9389000			15534	7376	9667	9713	15779	15779					0.13228533216761207
GVTRVTIRK	9	Unmodified	_GVTRVTIRK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.88909912109375	3	343.889097	1028.64546	-0.062398	-2.1458E-05	-0.19942	-6.8578E-05	-0.26182	-9.0037E-05	343.8889917094017	17.724	0.19397	17.724	17.64	17.834	0					8	4	3	0	0	0	0.035106	1	4477	4477		104.01	19.098	1	310370			15535	7376	9667	9713	15780	15780					0.13228533216761207
GVTRVTIRK	9	Unmodified	_GVTRVTIRK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8890380859375	3	343.889097	1028.64546	1.5308	0.00052642	-2.0126	-0.0006921	-0.48179	-0.00016568	343.88842747782616	17.923	0.60398	17.923	17.817	18.421	0					28	12	4	0	0	0	0.037924	1	5272	5272		101.25	34.823	1	10299000			15536	7376	9667	9713	15781	15781					0.13228533216761207
GVTSFKLFK	9	Unmodified	_GVTSFKLFK_					0	0	0			REV__ENST00000482487.5_1_13:50070137-50095117:+|nuORF	REV__ENST00000482487.5_1_13:50070137-50095117:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.8040161132812	2	513.80276	1025.59097	3.1855	0.0016367	-1.2915	-0.0006636	1.894	0.00097314	513.8020676290632	11.885	1.3464	11.885	11.797	13.143	0					70	35	4	0	0	0	0.39215	1	2375	2375		42.396	0	1	6515600	+		15537	19612	9668	9714	15782	15782					0.0791952134532039
GVTSLGLKQAL	11	Unmodified	_GVTSLGLKQAL_					0	0	0		KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant;ENSG00000186231|ENST00000369261|KLHL32	KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant	KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.888671875	3	362.888763	1085.64446	0.10452	3.793E-05	-0.99642	-0.00036159	-0.89189	-0.00032366	362.8884774439263	18.131	0.20611	18.131	18.061	18.267	0					10	7	2	0	0	0	0.7098	1	4483	4483		23.378	0.79825	1	183260			15538	7127	9669	9715	15783	15783					0.10506274057183873
GVTSQFVSK	9	Unmodified	_GVTSQFVSK_					0	0	0		INPP5D|p.E850Rfs*19|1|0.36|ENSG00000168918|chr2:233193909-233193909|G/-|frameshift_variant;nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	INPP5D|p.E850Rfs*19|1|0.36|ENSG00000168918|chr2:233193909-233193909|G/-|frameshift_variant	INPP5D|p.E850Rfs*19|1|0.36|ENSG00000168918|chr2:233193909-233193909|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.75836181640625	2	476.758549	951.502546	-0.63131	-0.00030098	-0.27708	-0.0001321	-0.90839	-0.00043308	476.75847242353404	25.958	0.21985	25.958	25.849	26.068	0					9	4	3	0	0	0	0.41958	1	9102	9102		40.058	2.2467	1	327770			15539	6136	9670	9716	15784	15784					0.024854810348642786
GVTTATRQ	8	Unmodified	_GVTTATRQ_					0	0	0			REV__ENST00000573058.1_1_17:79225874-79226105:-|nuORF	REV__ENST00000573058.1_1_17:79225874-79226105:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.2274475097656	2	417.227417	832.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.066	1	16.066	15.566	16.566	0								0	0	0	1.7419	1	4373	4373		55.504	14.726	1		+		15540	20393	9671	9717	15785	15785					0.01735754686535529
GVTVLFPFK	9	Unmodified	_GVTVLFPFK_					0	0	0			REV__PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	REV__PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.847	1	48.847	48.347	49.347	0								0	0	0	0.38667	1	14812	14812		14.865	4.5996	1		+		15541	14546	9672	9718	15786	15786					0.08212422833662458
GVTWIKRLS	9	Unmodified	_GVTWIKRLS_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3187866210938	2	530.319109	1058.62366	-0.036018	-1.9101E-05	-0.3978	-0.00021096	-0.43381	-0.00023006	530.3189796316391	15.789	0.19642	15.789	15.646	15.843	0					12	7	2	0	0	0	0.30841	1	3664	3664		49.536	0	1	219800	+		15542	14234	9673	9719	15787	15787					0.09669728468179528
GVVAVLLTK	9	Unmodified	_GVVAVLLTK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2999572753906	2	450.299853	898.585153	-0.48365	-0.00021779	1.4703	0.00066207	0.98664	0.00044428	450.30102306159375	40.091	0.44931	40.091	39.932	40.381	0					27	18	3	0	0	0	0.098791	1	15266	15266		79.713	15.505	1	258280			15543	6178	9674	9720	15788	15788					0.13180422833647754
GVVAVLLTK	9	Unmodified	_GVVAVLLTK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2999267578125	2	450.299853	898.585153	0.67921	0.00030585	-1.3034	-0.00058691	-0.62416	-0.00028106	450.299159949321	40.115	0.29785	40.115	39.956	40.254	0					17	10	2	0	0	0	0.037569	1	15766	15766		101.6	37.393	1	210530			15544	6178	9674	9720	15789	15789					0.13180422833647754
GVVAVLLTK	9	Unmodified	_GVVAVLLTK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.3001403808594	2	450.299853	898.585153	2.5387	0.0011432	-2.1979	-0.0009897	0.34084	0.00015348	450.2990452274907	40.039	0.36514	40.039	39.852	40.217	0					16	8	3	0	0	0	0.028876	1	15839	15839		110.12	27.879	1	269490			15545	6178	9674	9720	15790	15790					0.13180422833647754
GVVFVLNKQI	10	Unmodified	_GVVFVLNKQI_					0	0	0			REV__CNOT4|p.V106I|2|0.29|ENSG00000080802|chr7:135422212-135422212|C/T|missense_variant	REV__CNOT4|p.V106I|2|0.29|ENSG00000080802|chr7:135422212-135422212|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.89605712890625	3	372.89737	1115.67028	0.33041	0.00012321	-3.5429	-0.0013211	-3.2125	-0.0011979	372.8959596839662	14.591	0.13735	14.591	14.537	14.674	0					6	5	2	0	0	0	0.46128	1	3110	3110		49.536	5.1589	1	101170	+		15546	12534	9675	9721	15791	15791					0.1170716829947196
GVVGGEIQEK	10	Unmodified	_GVVGGEIQEK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2746276855469	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.1	1	24.1	23.6	24.6	0								0	0	0	0.26178	1	8070	8070		56.632	17.379	1				15547	8044	9676	9722	15792	15792					0.027888487179893673
GVVGGEIQEK	10	Unmodified	_GVVGGEIQEK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2750244140625	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.061	1	24.061	23.561	24.561	0								0	0	0	0.38879	1	8373	8373		33.922	1.1092	1				15548	8044	9676	9722	15793	15793					0.027888487179893673
GVVHRGVPS	9	Unmodified	_GVVHRGVPS_					0	0	0			REV__nc|ENSG00000134644|Q14671-4|PUM1	REV__nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2586364746094	2	454.259051	906.503549	0.0042351	1.9238E-06	-1.8949	-0.00086078	-1.8907	-0.00085886	454.258225701708	18.431	0.1067	18.431	18.376	18.483	0					8	4	2	0	0	0	0.11118	1	4581	4581		76.847	5.5509	1	218190	+		15549	21025	9677	9723	15794	15794					0.046557401944255616
GVVHRGVPS	9	Unmodified	_GVVHRGVPS_					0	0	0			REV__nc|ENSG00000134644|Q14671-4|PUM1	REV__nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2581787109375	2	454.259051	906.503549	-1.1665	-0.00052987	-0.83884	-0.00038105	-2.0053	-0.00091092	454.25867327971685	18.444	0.14327	18.444	18.36	18.503	0					10	5	3	0	0	0	0.26904	1	4809	4809		53.351	5.4358	1	305490	+		15550	21025	9677	9723	15795	15795					0.046557401944255616
GVVKIGPN	8	Unmodified	_GVVKIGPN_					0	0	0		ENST00000261318.4_1_12:117152555-117152831:-|nuORF	ENST00000261318.4_1_12:117152555-117152831:-|nuORF	ENST00000261318.4_1_12:117152555-117152831:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.2397766113281	2	392.239796	782.465038	0.88311	0.00034639	-0.86327	-0.00033861	0.01984	7.782E-06	392.239430395268	25.92	0.2696	25.92	25.744	26.014	0					7	4	2	0	0	0	0.64096	1	8892	8892		42.474	7.2737	1	430450			15551	8295	9678	9724	15796	15796					0.06510434559902478
GVVLTVDGPA	10	Unmodified	_GVVLTVDGPA_					0	0	0			REV__ENSG00000214309|ENST00000398075|MBLAC1	REV__ENSG00000214309|ENST00000398075|MBLAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2603454589844	2	464.260925	926.507297	-0.14127	-6.5584E-05	-0.86585	-0.00040198	-1.0071	-0.00046757	464.26043111534966	21.784	0.16684	21.784	21.675	21.842	0					6	3	2	0	0	0	0.57532	1	7290	7290		37.159	3.6435	1	156270	+		15552	17580	9679	9725	15797	15797					0.04110365177609765
GVVLYAIGL	9	Unmodified	_GVVLYAIGL_					0	0	0			REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF	REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7769775390625	2	452.778754	903.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.702	1	17.702	17.202	18.202	0								0	0	0	0.38735	1	4488	4488		14.664	0	1		+		15553	16866	9680	9726	15798	15798					0.0873244742526822
GVVMLVIPATQ	11	Unmodified	_GVVMLVIPATQ_					0	0	0		AluJb_dup73373|chr10:75217950-75218104:+|1.6276795936902488|0.000524734054382|11.6|477.0|1|1|sense;ENST00000468285.1_1_10:76973815-76980729:+|nuORF	AluJb_dup73373|chr10:75217950-75218104:+|1.6276795936902488|0.000524734054382|11.6|477.0|1|1|sense	AluJb_dup73373|chr10:75217950-75218104:+|1.6276795936902488|0.000524734054382|11.6|477.0|1|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.88818359375	3	376.554615	1126.64202	-2.1259	-0.00080052	-0.013359	-5.0304E-06	-2.1393	-0.00080555	376.8889651803513	17.408	0.31197	17.408	17.328	17.64	0					15	9	2	0	0	0	0.75314	1	4338	4338		22.562	2.5311	1	145440			15554	122	9681	9727	15799	15799					0.08376102327883928
GVVNIHENK	9	Unmodified	_GVVNIHENK_					0	0	0		nc|ENSG00000128607|Q6PID8-2|KLHDC10;ENSG00000128607|ENST00000335420|KLHDC10	nc|ENSG00000128607|Q6PID8-2|KLHDC10	nc|ENSG00000128607|Q6PID8-2|KLHDC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.275146484375	2	505.274898	1008.53524	-0.41818	-0.0002113	0.87845	0.00044386	0.46027	0.00023256	505.27541086995075	19.551	0.21201	19.551	19.447	19.659	0					6	4	2	0	0	0	0.022525	1	6212	6212		117.81	50.317	1	287030			15555	3554	9682	9728	15800	15800					0.031316881577026834
GVVPFSQRK	9	Unmodified	_GVVPFSQRK_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2957458496094	2	509.295633	1016.57671	-0.01747	-8.8974E-06	0.094345	4.805E-05	0.076875	3.9152E-05	509.29562215574987	23.685	0.40281	23.685	23.515	23.918	0					27	9	4	0	0	0	0.19952	1	7864	7864		64.207	25.401	1	1445600			15556	2292;23086	9683	9729	15801	15801					0.06908868917037125
GVVPFSQRK	9	Unmodified	_GVVPFSQRK_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.8661193847656	3	339.866181	1016.57671	0.51159	0.00017387	-0.80749	-0.00027444	-0.2959	-0.00010057	339.8659047155325	23.686	0.27744	23.686	23.554	23.832	0					16	6	3	0	0	0	0.5741	1	7866	7866		24.519	1.9395	1	588290			15557	2292;23086	9683	9729	15802	15802					0.06908868917037125
GVVQKEAAI	9	Unmodified	_GVVQKEAAI_					0	0	0		tr|U7T290|U7T290_FUSNULargeribosomalsubunitproteinuL24OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplXPE=3SV=1	tr|U7T290|U7T290_FUSNULargeribosomalsubunitproteinuL24OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplXPE=3SV=1	tr|U7T290|U7T290_FUSNULargeribosomalsubunitproteinuL24OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplXPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.77239990234375	2	457.768917	913.523281	0.77573	0.00035511	3.5678	0.0016332	4.3435	0.0019883	457.77014800973774	28.213	0.45388	28.213	28.121	28.575	0					17	11	2	0	0	0	0.22377	1	9977	9977		58.782	3.2778	1	388810			15558	22934	9684	9730	15803	15803					0.06306071414508096
GVVQPGRSL	9	Unmodified	_GVVQPGRSL_					0	0	0		nc|ENSG00000270550|P0DP03|IGHV3-30-5;nc|ENSG00000211955|P0DP02|IGHV3-30-3;nc|ENSG00000211955|P01772|IGHV3-33	nc|ENSG00000270550|P0DP03|IGHV3-30-5	nc|ENSG00000270550|P0DP03|IGHV3-30-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.76605224609375	2	456.766709	911.518865	0.039147	1.7881E-05	-0.52216	-0.0002385	-0.48301	-0.00022062	456.7664663103975	25.985	0.22322	25.985	25.87	26.093	0					17	7	3	0	0	0	0.35021	1	7840	7840		45.972	6.7194	1	164600			15559	11754	9685	9731	15804	15804					0.05956606991605895
GVVQPGRSL	9	Unmodified	_GVVQPGRSL_					0	0	0		nc|ENSG00000270550|P0DP03|IGHV3-30-5;nc|ENSG00000211955|P0DP02|IGHV3-30-3;nc|ENSG00000211955|P01772|IGHV3-33	nc|ENSG00000270550|P0DP03|IGHV3-30-5	nc|ENSG00000270550|P0DP03|IGHV3-30-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.76611328125	2	456.766709	911.518865	-1.052	-0.00048051	0.51408	0.00023481	-0.5379	-0.0002457	456.76697290166305	26	0.23376	26	25.889	26.123	0					16	7	3	0	0	0	0.25716	1	8117	8117		54.776	3.4409	1	245270			15560	11754	9685	9731	15805	15805					0.05956606991605895
GVVQPGRSL	9	Unmodified	_GVVQPGRSL_					0	0	0		nc|ENSG00000270550|P0DP03|IGHV3-30-5;nc|ENSG00000211955|P0DP02|IGHV3-30-3;nc|ENSG00000211955|P01772|IGHV3-33	nc|ENSG00000270550|P0DP03|IGHV3-30-5	nc|ENSG00000270550|P0DP03|IGHV3-30-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.76654052734375	2	456.766709	911.518865	0.72172	0.00032966	-1.138	-0.00051981	-0.41629	-0.00019015	456.76619473692097	26.268	0.51	26.268	26.067	26.577	0					22	10	3	0	0	0	0.25716	1	9369	9369		54.776	1.4249	1	1444100			15561	11754	9685	9731	15806	15806					0.05956606991605895
GVVRIYHRK	9	Unmodified	_GVVRIYHRK_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21|p.M287Yfs*6|1|0.04|ENSG00000164754|chr8:116856244-116856245|-/A|frameshift_variant	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5647277832031	3	376.564725	1126.67235	0.70925	0.00026708	-0.89649	-0.00033759	-0.18723	-7.0506E-05	376.56431197947717	17.285	0.30581	17.285	17.175	17.481	0					9	6	2	0	0	0	0.35021	1	4971	4971		45.972	15.403	1	477170			15562	5728	9686	9732	15807	15807					0.11407641827918269
GVVSKGDK	8	Unmodified	_GVVSKGDK_					0	0	0		GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.22906494140625	2	395.226885	788.439217	3.1734	0.0012542	1.8214	0.00071987	4.9948	0.0019741	395.22757875441164	42.762	0.29568	42.762	42.573	42.868	0					13	8	2	0	0	0	0.7126	1	17064	17064		31.955	4.0726	1	66657			15563	4987	9687	9733	15808	15808					0.03653540317623083
GVVVDVGT	8	Unmodified	_GVVVDVGT_					0	0	0			REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2097473144531	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.598	1	38.598	38.098	39.098	0								0	0	0	1.7419	1	15189	15189		28.254	0	1		+		15564	21751	9688	9734	15809	15809					0.019344490519983992
GVWGNLVL	8	Unmodified	_GVWGNLVL_					0	0	0		ENST00000588559.5_1_19:55705613-55720813:-|nuORF;nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH;PTPRH|p.N460Kfs*60|1|0.11|ENSG00000080031|chr19:55200276-55200277|-/T|frameshift_variant	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.24993896484375	2	429.247621	856.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.137	1	15.137	14.637	15.637	0								0	0	0	1.7419	1	3392	3392		54.765	4.7401	1				15565	1635	9689	9735	15810	15810					0.04670721076945483
GVWKKPFAI	9	Unmodified	_GVWKKPFAI_					0	0	0			REV__EPHA5|p.N81Kfs*8|1|0.27|ENSG00000145242|chr4:65643366-65643367|-/T|frameshift_variant	REV__EPHA5|p.N81Kfs*8|1|0.27|ENSG00000145242|chr4:65643366-65643367|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.2110595703125	3	349.211289	1044.61204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.096	1	22.096	21.596	22.596	0								0	0	0	0.36266	1	6451	6451		21.96	2.8564	1		+		15566	20641	9690	9736	15811	15811					0.09151531444831562
GVYGDVHRVK	10	Unmodified	_GVYGDVHRVK_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.3096923828125	2	565.309272	1128.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.626	1	19.626	19.126	20.126	0								0	0	0	0.34574	1	6236	6236		43.651	8.0325	1				15567	3106	9691	9737	15812	15812					0.04483352457418732
GVYGDVQRVK	10	Unmodified	_GVYGDVQRVK_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.3109741210938	2	560.809105	1119.60366	1.2791	0.00071733	-1.0192	-0.0005716	0.25985	0.00014573	560.8084200663319	23.461	0.1486	23.461	23.397	23.546	0					8	5	2	0	0	0	0.4758	1	6793	6793		47.96	18.409	1	91670			15568	1048	9692	9738	15813	15813					0.04863932737566756
GVYGDVQRVK	10	Unmodified	_GVYGDVQRVK_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.8097534179688	2	560.809105	1119.60366	0.48759	0.00027345	0.63208	0.00035448	1.1197	0.00062792	560.8097233837105	23.732	0.49777	23.732	23.633	24.131	0					16	11	3	0	0	0	0.065778	1	7909	7909		104.01	28.97	1	720650			15569	1048	9692	9738	15814	15814					0.04863932737566756
GVYGDVQRVK	10	Unmodified	_GVYGDVQRVK_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.80908203125	2	560.809105	1119.60366	-0.43108	-0.00024176	0.66492	0.00037289	0.23383	0.00013113	560.8096441204688	23.481	0.15579	23.481	23.411	23.567	0					8	5	2	0	0	0	0.20981	1	7067	7067		78.264	35.868	1	118980			15570	1048	9692	9738	15815	15815					0.04863932737566756
GVYGDVQRVK	10	Unmodified	_GVYGDVQRVK_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8096313476562	2	560.809105	1119.60366	-0.0284	-1.5927E-05	0.68248	0.00038274	0.65408	0.00036681	560.8094633451914	23.687	0.26831	23.687	23.578	23.847	0					12	5	3	0	0	0	0.03454	1	8186	8186		114.89	43.599	1	1098700			15571	1048	9692	9738	15816	15816					0.04863932737566756
GVYGSFASK	9	Unmodified	_GVYGSFASK_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2319030761719	2	458.232168	914.449782	-0.64404	-0.00029512	0.17276	7.9162E-05	-0.47128	-0.00021596	458.23220968901126	27.788	0.38965	27.788	27.653	28.043	0					22	9	4	0	0	0	0.17854	1	9734	9734		64.207	25.401	1	1424000			15572	5117	9693	9739	15817	15817					-0.010864770279567892
GVYIATLINGS	11	Unmodified	_GVYIATLINGS_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.8729553222656	3	369.873001	1106.59717	0.45772	0.0001693	-0.58538	-0.00021652	-0.12766	-4.7217E-05	369.8727640532367	23.998	0.27025	23.998	23.904	24.174	0					13	6	3	0	0	0	0.65907	1	8036	8036		21.78	0	1	826720			15573	4179	9694	9740	15818	15818					0.04813994786218245
GVYLTKKEQKK	11	Unmodified	_GVYLTKKEQKK_					0	0	0		ENST00000493553.1_1_1:150315777-150316738:+|nuORF;ENST00000519029.1_1_8:67896909-67897419:-|nuORF;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;ENSG00000117360|ENST00000324862|PRPF3	ENST00000493553.1_1_1:150315777-150316738:+|nuORF	ENST00000493553.1_1_1:150315777-150316738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.2657470703125	3	441.266122	1320.77654	-0.30978	-0.00013669	-0.54058	-0.00023854	-0.85036	-0.00037523	441.26590786985736	15.053	0.16994	15.053	14.994	15.164	0					5	3	2	0	0	0	0.6208	1	4054	4054		35.178	14.341	1	55042			15574	3032	9695	9741	15819	15819					0.12897879074103002
GVYLTKKEQKK	11	Unmodified	_GVYLTKKEQKK_					0	0	0		ENST00000493553.1_1_1:150315777-150316738:+|nuORF;ENST00000519029.1_1_8:67896909-67897419:-|nuORF;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;ENSG00000117360|ENST00000324862|PRPF3	ENST00000493553.1_1_1:150315777-150316738:+|nuORF	ENST00000493553.1_1_1:150315777-150316738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.2658996582031	3	441.266122	1320.77654	-0.53371	-0.00023551	0.62762	0.00027695	0.093905	4.1437E-05	441.2666056127119	15.021	0.2167	15.021	14.961	15.178	0					5	4	2	0	0	0	0.67983	1	3882	3882		29.551	0.97402	1	167880			15575	3032	9695	9741	15820	15820					0.12897879074103002
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7733764648438	2	545.271824	1088.5291	1.1886	0.00064813	-0.24765	-0.00013504	0.941	0.0005131	545.7726538309922	38.282	0.28144	38.282	38.212	38.494	0					22	16	2	0	0	0	0.15163	1	12490	12490		67.494	34.681	1	76960			15576	1555	9696	9742	15821	15821					-0.011628300738038888
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2720947265625	2	545.271824	1088.5291	0.39248	0.00021401	-0.14826	-8.084E-05	0.24422	0.00013317	545.271857366609	38.613	0.4958	38.613	38.485	38.981	0					34	19	2	0	0	0	0.078509	1	14660	14660		85.161	26.379	1	547950			15577	1555	9696	9742	15822	15822					-0.011628300738038888
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2725830078125	2	545.271824	1088.5291	0.32932	0.00017957	1.1146	0.00060776	1.4439	0.00078733	545.2730275614177	38.563	0.1563	38.563	38.493	38.65	0					6	5	2	0	0	0	0.021961	1	15140	15140		118.74	62.022	1	230220			15578	1555	9696	9742	15823	15823					-0.011628300738038888
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7744750976562	2	545.271824	1088.5291	-1.4978	-0.00081669	2.3376	0.0012746	0.83979	0.00045791	545.2733590892085	38.398	0.27142	38.398	38.293	38.564	0					24	13	3	0	0	0	0.1424	1	13718	13718		69.628	28.849	1	103410			15579	1555	9696	9742	15824	15824					-0.011628300738038888
GVYTGKLSEK	10	Unmodified	_GVYTGKLSEK_					0	0	0		ENST00000375743.8_1_1:16299537-16302484:-|nuORF	ENST00000375743.8_1_1:16299537-16302484:-|nuORF	ENST00000375743.8_1_1:16299537-16302484:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2987670898438	2	541.298039	1080.58152	0.29	0.00015698	1.0762	0.00058252	1.3662	0.0007395	541.2985745710093	21.429	0.22493	21.429	21.34	21.564	0					11	5	3	0	0	0	0.023179	1	6814	6814		122.94	46.165	1	1799600			15580	9034	9697	9743	15825	15825					0.04445708269145143
GVYTGKLSEK	10	Unmodified	_GVYTGKLSEK_					0	0	0		ENST00000375743.8_1_1:16299537-16302484:-|nuORF	ENST00000375743.8_1_1:16299537-16302484:-|nuORF	ENST00000375743.8_1_1:16299537-16302484:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2973022460938	2	541.298039	1080.58152	0.09195	4.9773E-05	-0.62671	-0.00033924	-0.53476	-0.00028946	541.2969155137757	21.141	0.16726	21.141	21	21.168	0					6	5	2	0	0	0	0.4287	1	6022	6022		53.089	11.662	1	104260			15581	9034	9697	9743	15826	15826					0.04445708269145143
GWAGPVSSLSG	11	Unmodified	_GWAGPVSSLSG_					0	0	0			REV__ENST00000401088.8_1_1:16722851-16723172:+|nuORF	REV__ENST00000401088.8_1_1:16722851-16723172:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.25341796875	2	509.253631	1016.49271	1.1648	0.00059319	-0.077577	-3.9506E-05	1.0873	0.00055369	509.2532628350477	33.805	0.20681	33.805	33.713	33.92	0					9	5	2	0	0	0	0.45317	1	12980	12980		47.657	6.2307	1	308130	+		15582	18947	9698	9744	15827	15827					-0.014877069705107715
GWCAQVTSPG	10	Unmodified	_GWCAQVTSPG_					0	0	0			REV__ENST00000377658.8_1_1:6651717-6651999:-|nuORF	REV__ENST00000377658.8_1_1:6651717-6651999:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.22735595703125	2	503.226559	1004.43857	-0.065267	-3.2844E-05	1.1786	0.00059308	1.1133	0.00056024	503.2272359177955	35.438	0.30732	35.438	35.295	35.602	0					14	8	2	0	0	0	0.65213	1	13268	13268		27.882	1.1893	1	228170	+		15583	18735	9699	9745	15828	15828					-0.06347622393730035
GWCSVNRYDWR	11	Unmodified	_GWCSVNRYDWR_					0	0	0		sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1;sp|P08546|DPOL_HCMVADNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL54PE=1SV=2	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.22125244140625	3	481.219177	1440.6357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.115	1	22.115	21.615	22.615	0								0	0	0	0.38772	1	7134	7134		39.873	1.1591	1				15584	22462	9700	9746	15829	15829					-0.06699022850943948
GWCVCRADA	9	Unmodified	_GWCVCRADA_					0	0	0			REV__ENST00000527563.1_1_1:113247606-113247669:-|nuORF	REV__ENST00000527563.1_1_1:113247606-113247669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7073669433594	2	490.707479	979.400406	-1.2579	-0.00061727	-0.030727	-1.5078E-05	-1.2887	-0.00063235	490.7075419422892	20.332	0.30227	20.332	20.26	20.563	0					15	9	3	0	0	0	0.41354	1	5654	5654		40.573	1.7665	1	396760	+		15585	20011	9701	9747	15830	15830					-0.09011831580062335
GWDPGVLGQI	10	Unmodified	_GWDPGVLGQI_					0	0	0		CCDC17|p.R259W|1|0.3|ENSG00000159588|chr1:45622633-45622633|G/A|missense_variant	CCDC17|p.R259W|1|0.3|ENSG00000159588|chr1:45622633-45622633|G/A|missense_variant	CCDC17|p.R259W|1|0.3|ENSG00000159588|chr1:45622633-45622633|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2718505859375	2	521.271824	1040.5291	1.7305	0.00090207	-2.6876	-0.001401	-0.95709	-0.00049891	521.2706904019833	38.125	0.21502	38.125	37.959	38.174	0					12	7	2	0	0	0	0.36476	1	14947	14947		60.118	3.3972	1	118500			15586	400	9702	9748	15831	15831					0.010451699261921021
GWDPGVLGQI	10	Unmodified	_GWDPGVLGQI_					0	0	0		CCDC17|p.R259W|1|0.3|ENSG00000159588|chr1:45622633-45622633|G/A|missense_variant	CCDC17|p.R259W|1|0.3|ENSG00000159588|chr1:45622633-45622633|G/A|missense_variant	CCDC17|p.R259W|1|0.3|ENSG00000159588|chr1:45622633-45622633|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2723388671875	2	521.271824	1040.5291	1.6242	0.00084665	-0.92651	-0.00048296	0.6977	0.00036369	521.2712500104847	38.572	1.1956	38.572	37.691	38.886	0					56	25	4	0	0	0	0.26198	1	15088	15088		71.877	9.7701	1	764640			15587	400	9702	9748	15832	15832					0.010451699261921021
GWEVLYQV	8	Unmodified	_GWEVLYQV_					0	0	0			REV__ENST00000427826.1_1_6:33383087-33383872:+|nuORF	REV__ENST00000427826.1_1_6:33383087-33383872:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2533874511719	2	497.255643	992.496732	-2.3021	-0.0011447	-2.5372	-0.0012616	-4.8393	-0.0024064	497.2548622258336	36.247	0.19053	36.247	36.152	36.342	0					10	7	2	0	0	0	0.7126	1	12985	12985		31.955	2.8053	1	47817	+		15588	14008	9703	9749	15833	15833					0.00018382523194304667
GWFPFGGY	8	Unmodified	_GWFPFGGY_					0	0	0			REV__MS4A8|p.G177Vfs*2|1|0.28|ENSG00000166959|chr11:60708774-60708774|G/-|frameshift_variant	REV__MS4A8|p.G177Vfs*2|1|0.28|ENSG00000166959|chr11:60708774-60708774|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7110900878906	2	465.710871	929.407189	-1.1626	-0.00054143	1.2735	0.00059309	0.11093	5.1661E-05	465.71156094516914	37.202	0.30135	37.202	37.106	37.407	0					23	16	2	0	0	0	0.79462	1	12566	12566		16.705	1.0687	1	99184	+		15589	16157	9704	9750	15834	15834					-0.06033827365513389
GWFPLHEA	8	Unmodified	_GWFPLHEA_					0	0	0		ASB15|p.N141Kfs*2|1|0.32|ENSG00000146809|chr7:123617702-123617703|-/A|frameshift_variant;ASB15|p.L148Ffs*2|1|0.36|ENSG00000146809|chr7:123617723-123617723|C/-|frameshift_variant;ASB15|p.W524Lfs*15|1|0.12|ENSG00000146809|chr7:123630095-123630096|-/TGATAAAATTTAATTTAGTA|frameshift_variant;ENSG00000146809|ENST00000451215|ASB15	ASB15|p.N141Kfs*2|1|0.32|ENSG00000146809|chr7:123617702-123617703|-/A|frameshift_variant	ASB15|p.N141Kfs*2|1|0.32|ENSG00000146809|chr7:123617702-123617703|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7344970703125	2	478.734877	955.455202	-0.26287	-0.00012585	0.24042	0.0001151	-0.022458	-1.0751E-05	478.7349512587234	33.469	0.15443	33.469	33.355	33.51	0					11	6	2	0	0	0	0.75243	1	11212	11212		26.796	0	1	232440			15590	237	9705	9751	15835	15835					-0.024307534454919733
GWGLSYDSV	9	Unmodified	_GWGLSYDSV_					0	0	0			REV__ENST00000453604.6_1_19:11513241-11517469:-|nuORF	REV__ENST00000453604.6_1_19:11513241-11517469:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2293701171875	2	492.227082	982.439611	-0.057729	-2.8416E-05	4.4481	0.0021895	4.3904	0.0021611	492.22900062004146	30.163	0.285	30.163	29.964	30.249	0					10	6	3	0	0	0	0.49003	1	11255	11255		33.516	1.5607	1	70971	+		15591	19334	9706	9752	15836	15836					-0.052310847531884974
GWGWVGTDM	9	Unmodified	_GWGWVGTDM_					0	0	0			REV__nc|ENSG00000172478|Q08AI8-2|MAB21L4	REV__nc|ENSG00000172478|Q08AI8-2|MAB21L4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7169494628906	2	504.715827	1007.4171	2.9325	0.0014801	-0.75847	-0.00038281	2.1741	0.0010973	504.7155105784826	24.054	0.26587	24.054	23.947	24.213	0					13	5	3	0	0	0	0.27781	1	8256	8256		52.299	11.727	1	715170	+		15592	21120	9707	9753	15837	15837					-0.0863100742245706
GWHVNAQRA	9	Unmodified	_GWHVNAQRA_					0	0	0			REV__ENST00000553588.1_3_14:76647133-76662365:+|nuORF	REV__ENST00000553588.1_3_14:76647133-76662365:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7647094726562	2	519.765032	1037.51551	-1.3618	-0.00070784	1.0551	0.00054841	-0.30673	-0.00015943	519.7656137950712	27.782	0.17568	27.782	27.688	27.864	0					7	4	2	0	0	0	0.25109	1	9140	9140		55.504	6.0627	1	195040	+		15593	13418	9708	9754	15838	15838					-0.0017464306238252902
GWLHNKIR	8	Unmodified	_GWLHNKIR_					0	0	0		TUBGCP3|p.T308M|1|0.15|ENSG00000126216|chr13:112554100-112554100|G/A|missense_variant;TUBGCP3|p.T406Qfs*22|1|0.09|ENSG00000126216|chr13:112545818-112545818|T/-|frameshift_variant;nc|ENSG00000126216|Q96CW5-3|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	TUBGCP3|p.T308M|1|0.15|ENSG00000126216|chr13:112554100-112554100|G/A|missense_variant	TUBGCP3|p.T308M|1|0.15|ENSG00000126216|chr13:112554100-112554100|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.8659973144531	3	341.866404	1022.57738	-0.057863	-1.9782E-05	-1.1452	-0.00039149	-1.203	-0.00041127	341.86599616767165	22.162	0.18495	22.162	22.074	22.259	0					6	4	2	0	0	0	0.8006	1	6567	6567		23.042	3.939	1	73289			15594	3464	9709	9755	15839	15839					0.06699708356757128
GWLLICKGR	9	Unmodified	_GWLLICKGR_					0	0	0		nc|ENSG00000131697|O75161-2|NPHP4	nc|ENSG00000131697|O75161-2|NPHP4	nc|ENSG00000131697|O75161-2|NPHP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3043823242188	2	523.302404	1044.59026	3.4165	0.0017879	0.05542	2.9002E-05	3.4719	0.0018169	523.3023111187575	50.321	1.2139	50.321	50.063	51.277	0					198	69	4	0	0	0	0.61124	1	20056	20056		18.324	0.95945	1	736650			15595	11524	9710	9756	15840	15840					0.06974403424624143
GWLLWLAL	8	Unmodified	_GWLLWLAL_					0	0	0			REV__nc|ENSG00000167323|Q13586-2|STIM1	REV__nc|ENSG00000167323|Q13586-2|STIM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.29034423828125	2	486.289288	970.564024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.341	1	37.341	36.841	37.841	0								0	0	0	1.7419	1	14150	14150		24.504	0	1		+		15596	16183	9711	9757	15841	15841					0.077564575247834
GWLTKVNE	8	Unmodified	_GWLTKVNE_					0	0	0		ENST00000530578.1_1_11:122665536-122667965:+|nuORF	ENST00000530578.1_1_11:122665536-122667965:+|nuORF	ENST00000530578.1_1_11:122665536-122667965:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7530212402344	2	473.753267	945.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.321	1	32.321	31.821	32.821	0								0	0	0	1.7419	1	11855	11855		47.916	1.9434	1				15597	10426	9712	9758	15842	15842					0.01705498380431436
GWNQSISSL	9	Unmodified	_GWNQSISSL_					0	0	0		ENSG00000135740|ENST00000299798|SLC9A5	ENSG00000135740|ENST00000299798|SLC9A5	ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2472839355469	2	496.245806	990.47706	2.8654	0.0014219	-0.022436	-1.1134E-05	2.8429	0.0014108	496.24578322303483	31.394	0.31006	31.394	31.292	31.602	0					11	6	2	0	0	0	0.14603	1	11743	11743		68.787	7.8149	1	1576300			15598	4017	9713	9759	15843	15843					-0.01855993487561136
GWPPATPAW	9	Unmodified	_GWPPATPAW_					0	0	0			REV__ENST00000397591.2_1_15:39874020-39874080:+|nuORF	REV__ENST00000397591.2_1_15:39874020-39874080:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7430419921875	2	491.742702	981.470852	-0.73383	-0.00036086	1.5115	0.00074327	0.77767	0.00038241	491.7434836149047	19.503	0.21201	19.503	19.447	19.659	0					9	4	3	0	0	0	0.47428	1	6187	6187		35.201	35.201	1	553430	+		15599	18913	9714	9760	15844	15844					-0.020624669284416086
GWQNSVVLQ	9	Unmodified	_GWQNSVVLQ_					0	0	0		COL12A1|p.R1804W|1|0.17|ENSG00000111799|chr6:75134840-75134840|G/A|missense_variant	COL12A1|p.R1804W|1|0.17|ENSG00000111799|chr6:75134840-75134840|G/A|missense_variant	COL12A1|p.R1804W|1|0.17|ENSG00000111799|chr6:75134840-75134840|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7684936523438	2	515.769448	1029.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.433	1	17.433	16.933	17.933	0								0	0	0	0.35507	1	4345	4345		24.203	0	1				15600	595	9715	9761	15845	15845					0.010762857834379247
GWRHGQRGHGQ	11	Unmodified	_GWRHGQRGHGQ_					0	0	0		ENST00000529265.5_1_11:61717864-61725974:+|nuORF;ENST00000524877.5_1_11:61722897-61725974:+|nuORF	ENST00000529265.5_1_11:61717864-61725974:+|nuORF	ENST00000529265.5_1_11:61717864-61725974:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	638.3143310546875	2	638.313743	1274.61293	0.99714	0.00063649	0.30748	0.00019627	1.3046	0.00083276	638.3140465377488	23.608	0.54981	23.608	23.504	24.053	0					36	19	2	0	0	0	0.80429	1	7246	7246		14.137	1.3254	1	225970			15601	10352	9716	9762	15846	15846					-0.013388611335358291
GWRLERLL	8	Unmodified	_GWRLERLL_					0	0	0		ENST00000493582.5_1_2:240274529-240323149:-|nuORF	ENST00000493582.5_1_2:240274529-240323149:-|nuORF	ENST00000493582.5_1_2:240274529-240323149:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.8123779296875	2	521.811451	1041.60835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.233	1	12.233	11.733	12.733	0								0	0	0	1.7419	1	2316	2316		28.254	2.6802	1				15602	10091	9717	9763	15847	15847					0.08920861671003877
GWSDLGGRR	9	Unmodified	_GWSDLGGRR_					0	0	0			REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF	REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.25665283203125	2	502.25704	1002.49953	-2.0758	-0.0010426	1.0161	0.00051032	-1.0597	-0.00053227	502.25749264648954	21.567	0.34485	21.567	21.374	21.719	0					20	8	3	0	0	0	0.30951	1	6283	6283		49.442	49.442	1	109380	+		15603	19150	9718	9764	15848	15848					-0.0016234929927350095
GWVMLHLW	8	Unmodified	_GWVMLHLW_					0	0	0		ENST00000583334.5_3_17:30666835-30668280:-|nuORF	ENST00000583334.5_3_17:30666835-30668280:-|nuORF	ENST00000583334.5_3_17:30666835-30668280:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2720336914062	2	521.270573	1040.52659	1.7368	0.00090533	0.9598	0.00050031	2.6966	0.0014056	521.2711178260073	38.651	0.57132	38.651	38.195	38.766	0					52	20	3	0	0	0	0.63381	1	15103	15103		43.626	43.626	1	330480			15604	10883	9719	9765	15849	15849					0.007950429875563714
GWVSSSLTLK	10	Unmodified	_GWVSSSLTLK_					0	0	0		BCAM|p.G576Afs*20|1|0.34|ENSG00000187244|chr19:44819686-44819686|G/-|frameshift_variant;ENSG00000187244|ENST00000270233|BCAM	BCAM|p.G576Afs*20|1|0.34|ENSG00000187244|chr19:44819686-44819686|G/-|frameshift_variant	BCAM|p.G576Afs*20|1|0.34|ENSG00000187244|chr19:44819686-44819686|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7994384765625	2	539.300581	1076.58661	1.0165	0.0005482	-3.6326	-0.001959	-2.6161	-0.0014108	539.2992493288176	27.33	0.46511	27.33	27.164	27.629	0					27	11	3	0	0	0	0.60076	1	9054	9054		34.173	0.25091	1	190910			15605	284	9720	9766	15850	15850					0.05138012131760661
GWWRKQDE	8	Unmodified	_GWWRKQDE_					0	0	0			REV__ENST00000538118.5_1_12:25047396-25055084:-|nuORF	REV__ENST00000538118.5_1_12:25047396-25055084:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7682495117188	2	552.764697	1103.51484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.323	1	44.323	43.823	44.823	0								0	0	0	1.7419	1	17758	17758		38.806	3.6541	1		+		15606	20117	9721	9767	15851	15851					-0.032774825020851495
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2600708007812	2	529.258717	1056.50288	0.47765	0.0002528	-0.0082359	-4.3589E-06	0.46941	0.00024844	529.2591253424255	35.778	0.16647	35.778	35.713	35.879	0					14	8	3	0	0	0	0.032656	1	11726	11726		106.42	50.911	1	168250			15607	1262	9722	9768	15852	15852					-0.023110992452757273
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2591552734375	2	529.258717	1056.50288	0.11211	5.9336E-05	0.2706	0.00014322	0.38271	0.00020255	529.2590261882858	36.054	0.27752	36.054	35.969	36.247	0					19	7	3	0	0	0	0.015835	1	13556	13556		128.86	70.631	1	710590			15608	1262	9722	9768	15853	15853					-0.023110992452757273
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2587280273438	2	529.258717	1056.50288	0.090201	4.774E-05	0.56816	0.0003007	0.65836	0.00034844	529.2590938381771	35.885	0.18005	35.885	35.791	35.971	0					18	8	3	0	0	0	0.032656	1	12131	12131		106.42	58.758	1	193840			15609	1262	9722	9768	15854	15854					-0.023110992452757273
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2592163085938	2	529.258717	1056.50288	1.7393	0.00092054	0.22225	0.00011763	1.9616	0.0010382	529.2588397807643	36.055	0.57921	36.055	35.744	36.324	0					32	17	3	0	0	0	0.015835	1	14010	14010		128.86	63.396	1	1217200			15610	1262	9722	9768	15855	15855					-0.023110992452757273
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2588500976562	2	529.258717	1056.50288	-1.1757	-0.00062226	1.5876	0.00084024	0.41186	0.00021798	529.2594313632777	35.831	0.26294	35.831	35.773	36.036	0					24	10	3	0	0	0	0.062676	1	12782	12782		90.777	46.66	1	206640			15611	1262	9722	9768	15856	15856					-0.023110992452757273
GYGGGFGGGF	10	Unmodified	_GYGGGFGGGF_					0	0	0		ENSG00000186442|ENST00000417996|KRT3;CON__P12035	ENSG00000186442|ENST00000417996|KRT3	ENSG00000186442|ENST00000417996|KRT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.18707275390625	2	438.18776	874.360967	-0.57379	-0.00025143	0.24693	0.0001082	-0.32686	-0.00014323	438.1878123827537	46.037	0.17939	46.037	45.949	46.128	0					13	8	3	0	0	0	0.0077252	1	18419	18419		154.34	0.4538	1	487870		+	15612	638	9723	9769	15857	15857					-0.081238922676107
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.1875	2	438.18776	874.360967	0.2067	9.0574E-05	0.13209	5.7881E-05	0.33879	0.00014846	438.18785606480805	45.763	0.055691	45.763	45.711	45.766	0					6	3	2	0	0	0	0.018785	1	14179	14179		123.99	3.9313	1	100080			15613	2896	9724	9770	15858	15858					-0.08123892267622068
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.1877746582031	2	438.18776	874.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.085	1	46.085	45.585	46.585	0								0	0	0	0.00054038	1	17078	17078		138.48	2.0445	1				15614	2896	9724	9770	15859	15859					-0.08123892267622068
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.1876525878906	2	438.18776	874.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.072	1	46.072	45.572	46.572	0								0	0	0	0.11313	1	17758	17758		68.485	33.284	1				15615	2896	9724	9770	15860	15860					-0.08123892267622068
GYGGGPAGG	9	Unmodified	_GYGGGPAGG_					0	0	0		DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36;DHX36|p.K153Nfs*3|1|0.08|ENSG00000174953|chr3:154315189-154315190|TT/-|frameshift_variant;DHX36|p.N193Mfs*25|1|0.09|ENSG00000174953|chr3:154315071-154315071|T/-|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.65570068359375	2	346.653553	691.292553	1.5035	0.0005212	2.6884	0.00093195	4.1919	0.0014531	346.6550722353306	45.716	0.23195	45.716	45.62	45.852	0					17	9	2	0	0	0	0.61124	1	18316	18316		14.664	0.88877	1	118690			15616	784	9725	9771	15861	15861					-0.06544136847469417
GYGGQVLAG	9	Unmodified	_GYGGQVLAG_					0	0	0			REV__nc|ENSG00000088812|O75882-3|ATRN	REV__nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	411.2106018066406	2	411.211235	820.407917	-0.14672	-6.0334E-05	-0.037518	-1.5428E-05	-0.18424	-7.5761E-05	411.2112990381482	17.404	0.12752	17.404	17.289	17.417	0					6	4	2	0	0	0	0.39123	1	4141	4141		42.474	0	1	102320	+		15617	13396	9726	9772	15862	15862					-0.009470327164763148
GYGGQVLAG	9	Unmodified	_GYGGQVLAG_					0	0	0			REV__nc|ENSG00000088812|O75882-3|ATRN	REV__nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.2110290527344	2	411.211235	820.407917	-0.66432	-0.00027318	0.26234	0.00010788	-0.40198	-0.0001653	411.2113103540622	17.694	0.16798	17.694	17.608	17.776	0					9	4	3	0	0	0	0.21116	1	5041	5041		60.294	0	1	852170	+		15618	13396	9726	9772	15863	15863					-0.009470327164763148
GYGGSANSF	9	Unmodified	_GYGGSANSF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.18292236328125	2	430.182675	858.350796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.36	1	31.36	30.86	31.86	0								0	0	0	0.27025	1	10788	10788		40.778	17.736	1				15619	4025	9727	9773	15864	15864					-0.08404499992855108
GYGTHLMNHLK	11	Unmodified	_GYGTHLMNHLK_					0	0	0		ENST00000468111.1_1_3:20168975-20187957:+|nuORF;nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000114166|ENST00000263754|KAT2B;ENSG00000108773|ENST00000225916|KAT2A	ENST00000468111.1_1_3:20168975-20187957:+|nuORF	ENST00000468111.1_1_3:20168975-20187957:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.2177734375	3	424.216885	1269.62883	-0.36492	-0.0001548	2.0741	0.00087989	1.7092	0.00072508	424.21798457529746	28.018	0.21626	28.018	27.91	28.126	0					9	4	3	0	0	0	0.36734	1	10113	10113		55.084	8.6271	1	748420			15620	2548	9728	9774	15865	15865					0.004796642684823382
GYIELTEWA	9	Unmodified	_GYIELTEWA_					0	0	0		nc|ENSG00000206199|A6NFN9-1|ANKUB1;ANKUB1|p.Q448Pfs*25|1|0.41|ENSG00000206199|chr3:149767319-149767320|-/G|frameshift_variant;ANKUB1|p.K437Nfs*36|1|0.12|ENSG00000206199|chr3:149767351-149767352|-/G|frameshift_variant;nc|ENSG00000206199|A6NFN9|ANKUB1;ENSG00000206199|ENST00000446160|ANKUB1	nc|ENSG00000206199|A6NFN9-1|ANKUB1	nc|ENSG00000206199|A6NFN9-1|ANKUB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.264404296875	2	541.263665	1080.51278	0.28634	0.00015499	1.1051	0.00059818	1.3915	0.00075316	541.2642624165336	11.49	0.084076	11.49	11.436	11.52	0					6	3	2	0	0	0	0.61124	1	2221	2221		18.324	1.8513	1	198840			15621	163	9729	9775	15866	15866					-0.02425956030560883
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.80908203125	2	544.808574	1087.60259	3.7051	0.0020186	-1.6592	-0.00090396	2.0458	0.0011146	544.8076726472788	39.509	0.37826	39.509	39.404	39.782	0					17	8	3	0	0	0	0.090954	1	15608	15608		75.043	11.737	1	742980			15622	5685	9730	9776	15867	15867					0.062297183686723656
GYKSGNFGNVT	11	Unmodified	_GYKSGNFGNVT_					0	0	0		tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.2767333984375	2	572.275095	1142.53564	3.3839	0.0019365	-0.35575	-0.00020359	3.0282	0.0017329	572.2749876104161	21.268	0.36446	21.268	21.158	21.522	0					21	7	4	0	0	0	0.3224	1	6906	6906		60.118	1.3363	1	1146700			15623	22996	9731	9777	15868	15868					-0.029929369130968553
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.25604248046875	2	491.255643	980.496732	-0.5315	-0.0002611	1.6425	0.00080691	1.111	0.0005458	491.2557321291112	38.581	0.24596	38.581	38.418	38.664	0					21	9	4	0	0	0	0.037569	1	14649	14649		101.6	42.819	1	240010			15624	4173	9732	9778	15869	15869					0.005703825231876181
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2552185058594	2	491.255643	980.496732	0.58666	0.0002882	-0.9804	-0.00048163	-0.39374	-0.00019343	491.25527076405	38.542	0.18251	38.542	38.445	38.628	0					10	6	2	0	0	0	0.16002	1	15145	15145		66.429	8.618	1	90421			15625	4173	9732	9778	15870	15870					0.005703825231876181
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2557067871094	2	491.255643	980.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.545	1	38.545	38.045	39.045	0								0	0	0	0.099216	1	15126	15126		71.877	11.584	1				15626	4173	9732	9778	15871	15871					0.005703825231876181
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2558898925781	2	491.255643	980.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.368	1	38.368	37.868	38.868	0								0	0	0	0.21054	1	13726	13726		49.442	10.635	1				15627	4173	9732	9778	15872	15872					0.005703825231876181
GYLYGAIQA	9	Unmodified	_GYLYGAIQA_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.24761962890625	2	478.247818	954.481082	0.016026	7.6643E-06	-0.76252	-0.00036467	-0.7465	-0.00035701	478.2476044477509	28.093	0.14726	28.093	28.017	28.165	0					7	5	2	0	0	0	0.49003	1	8742	8742		33.516	1.5607	1	53095	+		15628	16556	9733	9779	15873	15873					0.002020960061486221
GYNAGLVQ	8	Unmodified	_GYNAGLVQ_					0	0	0			REV__ETV5|p.A107V|1|0.38|ENSG00000244405|chr3:186081088-186081088|G/A|missense_variant	REV__ETV5|p.A107V|1|0.38|ENSG00000244405|chr3:186081088-186081088|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	411.21124267578125	2	411.211235	820.407917	0.64819	0.00026654	-1.109	-0.00045603	-0.4608	-0.00018949	411.21079072879246	17.389	0.11935	17.389	17.332	17.451	0					7	4	2	0	0	0	0.65276	1	4134	4134		40.573	0	1	124730	+		15629	20648	9734	9780	15874	15874					-0.009470327164763148
GYNALLRYE	9	Unmodified	_GYNALLRYE_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1;nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF	ENSG00000011258|ENST00000586178|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.784423828125	2	549.782556	1097.55056	0.22385	0.00012307	2.2598	0.0012424	2.4837	0.0013655	549.7839192627026	11.816	0.135	11.816	11.722	11.857	0					7	4	2	0	0	0	0.60749	1	2504	2504		20.947	5.3051	1	359000			15630	1046	9735	9781	15875	15875					0.005685549548843483
GYNKEETLGK	10	Unmodified	_GYNKEETLGK_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.7911987304688	2	569.790578	1137.5666	1.1347	0.00064651	-1.1138	-0.00063463	0.020864	1.1888E-05	569.7902324858585	33.24	0.19185	33.24	33.146	33.338	0					12	8	2	0	0	0	0.50287	1	10788	10788		45.022	1.3714	1	83094	+		15631	13066	9736	9782	15876	15876					0.0033221640117062634
GYPIHVPAGVT	11	Unmodified	_GYPIHVPAGVT_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L	nc|ENSG00000243244|Q9Y6Q2-2|STON1	nc|ENSG00000243244|Q9Y6Q2-2|STON1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.802734375	2	555.800749	1109.58694	3.5508	0.0019735	0.39874	0.00022162	3.9495	0.0021951	555.8011311001824	52.77	0.18867	52.77	52.696	52.885	0					14	11	2	0	0	0	0.69733	1	20429	20429		27.882	4.8398	1	83361			15632	1425	9737	9783	15877	15877					0.03653431851603273
GYRCIIVM	8	Carbamidomethyl (C),Oxidation (M)	_GYRC(Carbamidomethyl (C))IIVM(Oxidation (M))_	GYRC(1)IIVM	GYRCIIVM(1)	GYRC(47)IIVM	GYRCIIVM(47)	0	1	1		ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS	ENSG00000160200|ENST00000398165|CBS	ENSG00000160200|ENST00000398165|CBS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2601928710938	2	514.256805	1026.49906	3.1958	0.0016435	3.0782	0.001583	6.274	0.0032264	514.2588688376827	42.732	0.18834	42.732	42.651	42.839	0					8	5	2	0	0	0	0.61433	1	17081	17081		46.766	8.9549	1	77927			15633	5345	9738	9784	15878	15878	218	216			-0.01313228334993255
GYRSPINTF	9	Unmodified	_GYRSPINTF_					0	0	0			REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7698364257812	2	527.769448	1053.52434	1.7526	0.00092495	-1.2002	-0.00063343	0.55236	0.00029152	527.7687112388828	35.428	0.22532	35.428	35.318	35.544	0					18	6	4	0	0	0	0.21263	1	13719	13719		60.118	1.8883	1	688160	+		15634	15516	9739	9785	15879	15879					-0.00027714216571439465
GYRTFVVK	8	Unmodified	_GYRTFVVK_					0	0	0			REV__ENSG00000110881|ENST00000447966|ASIC1	REV__ENSG00000110881|ENST00000447966|ASIC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.27923583984375	2	485.279452	968.544351	-0.091118	-4.4218E-05	-0.44697	-0.00021691	-0.53809	-0.00026113	485.27919809985923	29.058	0.30086	29.058	28.878	29.179	0					13	6	3	0	0	0	0.67394	1	10738	10738		37.159	6.6555	1	126760	+		15635	13950	9740	9786	15880	15880					0.05882081514039328
GYSAASTLLAP	11	Unmodified	_GYSAASTLLAP_					0	0	0			REV__ENST00000505099.5_1_6:11723662-11735825:-|nuORF	REV__ENST00000505099.5_1_6:11723662-11735825:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7765502929688	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.24	1	15.24	14.74	15.74	0								0	0	0	0.45344	1	3894	3894		10.265	1.0823	1		+		15636	19831	9741	9787	15881	15881					0.016537328607682866
GYSALREM	8	Unmodified	_GYSALREM_					0	0	0			REV__ENSG00000086696|ENST00000199936|HSD17B2	REV__ENSG00000086696|ENST00000199936|HSD17B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.72332763671875	2	463.723652	925.432752	-0.44208	-0.000205	-0.23499	-0.00010897	-0.67707	-0.00031397	463.7235898081424	33.788	0.24968	33.788	33.703	33.953	0					19	10	3	0	0	0	0.44433	1	11003	11003		65.803	4.8312	1	267850	+		15637	13370	9742	9788	15882	15882					-0.03294720905410031
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;GMPR|p.V142M|1|0.39|ENSG00000137198|chr6:16254694-16254694|G/A|missense_variant;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7457885742188	2	557.745639	1113.47673	3.48	0.001941	-1.8922	-0.0010553	1.5879	0.00088563	557.7440636487735	42.965	0.98004	42.965	42.198	43.178	0					34	27	2	0	0	0	0.26904	1	17163	17163		53.351	14.099	1	315760			15638	2075	9743	9789	15883	15883					-0.07547413207407772
GYSFNQSAL	9	Unmodified	_GYSFNQSAL_					0	0	0			REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7318115234375	2	493.732532	985.45051	0.7696	0.00037997	-1.8251	-0.00090109	-1.0555	-0.00052112	493.73183619064184	36.022	0.20282	36.022	35.942	36.144	0					8	5	2	0	0	0	0.48389	1	13569	13569		34.173	0	1	77842	+		15639	13382	9744	9790	15884	15884					-0.04279682378898997
GYSSKGLSQ	9	Unmodified	_GYSSKGLSQ_					0	0	0		SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.73284912109375	2	463.732532	925.45051	0.098054	4.5471E-05	0.11284	5.233E-05	0.2109	9.7801E-05	463.7325936536959	17.921	0.23883	17.921	17.841	18.08	0					12	6	3	0	0	0	0.07136	1	4362	4362		87.696	2.5356	1	764140			15640	22414	9745	9791	15885	15885					-0.015196823788983238
GYSSKGLSQ	9	Unmodified	_GYSSKGLSQ_					0	0	0		SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7320251464844	2	463.732532	925.45051	-0.7286	-0.00033787	0.4211	0.00019528	-0.30749	-0.0001426	463.73273724307995	17.916	0.16658	17.916	17.831	17.998	0					11	4	3	0	0	0	0.27249	1	4579	4579		52.937	1.744	1	748960			15641	22414	9745	9791	15886	15886					-0.015196823788983238
GYSSKGLSQ	9	Unmodified	_GYSSKGLSQ_					0	0	0		SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7323913574219	2	463.732532	925.45051	-0.38189	-0.0001771	-0.15327	-7.1076E-05	-0.53516	-0.00024817	463.73241803027156	18.009	0.25773	18.009	17.907	18.165	0					11	5	3	0	0	0	0.10915	1	4601	4601		77.318	2.2743	1	642790			15642	22414	9745	9791	15887	15887					-0.015196823788983238
GYSSKGLSQ	9	Unmodified	_GYSSKGLSQ_					0	0	0		SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	SLC44A4|p.I435S|1|0.34|ENSG00000204385|chr6:31866056-31866056|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7322998046875	2	463.732532	925.45051	-0.47937	-0.0002223	0.10496	4.8671E-05	-0.37441	-0.00017363	463.73263880476367	18.134	0.16315	18.134	18.076	18.239	0					9	3	4	0	0	0	0.0406	1	5379	5379		98.629	5.4861	1	913210			15643	22414	9745	9791	15888	15888					-0.015196823788983238
GYTALHVFS	9	Unmodified	_GYTALHVFS_					0	0	0		SENP2|p.P433T|1|0.02|ENSG00000163904|chr3:185619353-185619353|C/A|missense_variant	SENP2|p.P433T|1|0.02|ENSG00000163904|chr3:185619353-185619353|C/A|missense_variant	SENP2|p.P433T|1|0.02|ENSG00000163904|chr3:185619353-185619353|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7522888183594	2	497.753267	993.491981	-0.056296	-2.8022E-05	-1.377	-0.0006854	-1.4333	-0.00071342	497.75233930047204	14.456	0.083705	14.456	14.42	14.503	0					8	4	2	0	0	0	0.35045	1	2979	2979		45.952	3.4775	1	82889			15644	22384	9746	9792	15889	15889					-0.005025016195759235
GYVDRSFVDI	10	Unmodified	_GYVDRSFVDI_					0	0	0			REV__ENSG00000196912|ENST00000359901|ANKRD36B	REV__ENSG00000196912|ENST00000359901|ANKRD36B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	586.2975463867188	2	585.793121	1169.57169	1.5105	0.00088484	2.0948	0.0012271	3.6053	0.002112	586.2957921428527	25.474	0.087107	25.474	25.416	25.503	0					7	4	2	0	0	0	0.67098	1	7673	7673		25.574	2.9944	1	44448	+		15645	17291	9747	9793	15890	15890					-0.006314797362165336
GYYPNGGG	8	Unmodified	_GYYPNGGG_					0	0	0			REV__tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1	REV__tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.667724609375	2	392.66666	783.318768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.019	1	47.019	46.519	47.519	0								0	0	0	1.7419	1	17300	17300		23.037	1.3344	1		+		15646	22137	9748	9794	15891	15891					-0.08155867675986883
HAAAFPITE	9	Unmodified	_HAAAFPITE_					0	0	0		ENST00000592937.1_1_19:2477660-2478092:+|nuORF	ENST00000592937.1_1_19:2477660-2478092:+|nuORF	ENST00000592937.1_1_19:2477660-2478092:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7449035644531	2	478.745442	955.476331	-0.3204	-0.00015339	0.13679	6.5488E-05	-0.18361	-8.7904E-05	478.7453649137552	38.974	0.17251	38.974	38.908	39.08	0					12	9	2	0	0	0	0.50461	1	13917	13917		31.955	0	1	64943			15647	10977	9749	9795	15892	15892					-0.003187881366216061
HAAGFAYTY	9	Unmodified	_HAAGFAYTY_					0	0	0		ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7294921875	2	500.729792	999.445031	-0.99497	-0.00049821	0.51976	0.00026026	-0.47521	-0.00023795	500.73030577454	33.885	0.2897	33.885	33.777	34.067	0					16	11	2	0	0	0	0.27781	1	11405	11405		52.299	8.1824	1	166950			15648	5928	9750	9796	15893	15893					-0.05471361170725686
HAAGFAYTY	9	Unmodified	_HAAGFAYTY_					0	0	0		ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.73016357421875	2	500.729792	999.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.074	1	34.074	33.574	34.574	0								0	0	0	0.22106	1	13101	13101		47.916	5.5195	1				15649	5928	9750	9796	15894	15894					-0.05471361170725686
HAAGFAYTY	9	Unmodified	_HAAGFAYTY_					0	0	0		ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.72991943359375	2	500.729792	999.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.014	1	34.014	33.514	34.514	0								0	0	0	0.14807	1	12992	12992		60.294	1.512	1				15650	5928	9750	9796	15895	15895					-0.05471361170725686
HAAHIISEL	9	Unmodified	_HAAHIISEL_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant;ENST00000487406.2_1_9:133495824-133506568:+|nuORF	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.771728515625	2	495.771991	989.529429	-0.036788	-1.8238E-05	-0.36216	-0.00017955	-0.39894	-0.00019779	495.7704550369412	29.121	0.49755	29.121	28.728	29.226	0					18	10	3	0	0	0	0.21116	1	10763	10763		60.294	4.7898	1	192450			15651	2471	9751	9797	15896	15896					0.03424589646044751
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.26116943359375	2	492.261456	982.50836	-0.16488	-8.1164E-05	-0.14183	-6.9816E-05	-0.30671	-0.00015098	492.2613699860563	28.093	0.29412	28.093	27.988	28.282	0					22	10	3	0	0	0	0.24334	1	8718	8718		56.434	20.816	1	769080			15652	6636	9752	9798	15897	15897					0.016405795465175288
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.26129150390625	2	492.261456	982.50836	-1.264	-0.00062222	0.94856	0.00046694	-0.31543	-0.00015527	492.26193595308405	28.122	0.33849	28.122	28.014	28.353	0					28	12	3	0	0	0	0.25716	1	9018	9018		54.776	20.604	1	1196100			15653	6636	9752	9798	15898	15898					0.016405795465175288
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2611999511719	2	492.261456	982.50836	-0.057679	-2.8393E-05	-0.38997	-0.00019197	-0.44764	-0.00022036	492.2612296396793	28.39	0.30581	28.39	28.291	28.597	0					12	6	3	0	0	0	0.11898	1	10382	10382		75.043	32.647	1	554940			15654	6636	9752	9798	15899	15899					0.016405795465175288
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.26123046875	2	492.261456	982.50836	0.58531	0.00028812	-0.98385	-0.00048431	-0.39854	-0.00019619	492.2610266249035	28.373	0.3082	28.373	28.224	28.532	0					16	6	3	0	0	0	0.16806	1	10373	10373		65.465	6.6834	1	8455800			15655	6636	9752	9798	15900	15900					0.016405795465175288
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7628173828125	2	492.261456	982.50836	0.44162	0.00021739	-0.76407	-0.00037612	-0.32244	-0.00015873	492.2610123168923	28.168	0.23107	28.168	28.082	28.313	0					9	5	2	0	0	0	0.24334	1	9303	9303		56.434	19.275	1	639980			15656	6636	9752	9798	15901	15901					0.016405795465175288
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.26129150390625	2	492.261456	982.50836	-0.034577	-1.7021E-05	-0.14838	-7.304E-05	-0.18295	-9.006E-05	492.26134292120423	28.151	0.30459	28.151	28.069	28.374	0					17	7	3	0	0	0	0.048471	1	9314	9314		95.815	49.843	1	1065200			15657	6636	9752	9798	15902	15902					0.016405795465175288
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2611083984375	2	492.261456	982.50836	-0.5881	-0.0002895	-0.16133	-7.9419E-05	-0.74943	-0.00036892	492.2613528636382	28.319	0.46425	28.319	28.16	28.624	0					25	9	5	0	0	0	0.021961	1	10232	10232		118.74	17.142	1	5213400			15658	6636	9752	9798	15903	15903					0.016405795465175288
HAAMLGLMY	9	Unmodified	_HAAMLGLMY_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7464904785156	2	503.746073	1005.47759	2.9303	0.0014762	-2.596	-0.0013077	0.33438	0.00016844	503.7447392422651	45.631	0.36268	45.631	45.412	45.775	0					26	13	3	0	0	0	0.43174	1	18259	18259		39.021	1.993	1	181670			15659	3083	9753	9799	15904	15904					-0.024926133637336534
HAANQSYQY	9	Unmodified	_HAANQSYQY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.239013671875	2	541.238513	1080.46247	1.714	0.0009277	-0.75263	-0.00040735	0.9614	0.00052035	541.2381169991041	21.342	0.42305	21.342	21.235	21.658	0					28	14	3	0	0	0	0.063823	1	5863	5863		90.37	29.398	1	401580			15660	3641	9754	9800	15905	15905					-0.07454065635693041
HAANQSYQY	9	Unmodified	_HAANQSYQY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2399291992188	2	541.238513	1080.46247	1.0415	0.0005637	-0.11051	-5.9811E-05	0.93099	0.00050389	541.2386749083979	21.366	0.15123	21.366	21.263	21.414	0					7	4	2	0	0	0	0.41113	1	5876	5876		40.778	0.20554	1	61917			15661	3641	9754	9800	15906	15906					-0.07454065635693041
HAANQSYQY	9	Unmodified	_HAANQSYQY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2389526367188	2	541.238513	1080.46247	1.8944	0.0010253	-1.2147	-0.00065743	0.67973	0.00036789	541.2377902670613	21.701	0.36732	21.701	21.564	21.932	0					23	8	3	0	0	0	0.013878	1	6925	6925		132.76	58.783	1	3789100			15662	3641	9754	9800	15907	15907					-0.07454065635693041
HAANQSYQY	9	Unmodified	_HAANQSYQY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2386474609375	2	541.238513	1080.46247	0.095736	5.1816E-05	0.59752	0.0003234	0.69325	0.00037522	541.2388744100487	21.424	0.50899	21.424	21.316	21.825	0					30	15	4	0	0	0	0.056004	1	6125	6125		93.143	93.143	1	1184200			15663	3641	9754	9800	15908	15908					-0.07454065635693041
HAANQSYQY	9	Unmodified	_HAANQSYQY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.23876953125	2	541.238513	1080.46247	1.0469	0.00056664	-0.38069	-0.00020604	0.66623	0.00036059	541.2383208017693	21.491	0.48069	21.491	21.39	21.871	0					17	11	3	0	0	0	0.023928	1	6225	6225		115.49	62.143	1	727810			15664	3641	9754	9800	15909	15909					-0.07454065635693041
HAANQSYQY	9	Unmodified	_HAANQSYQY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.23876953125	2	541.238513	1080.46247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.445	1	21.445	20.945	21.945	0								0	0	0	0.095784	1	6218	6218		72.879	25.222	1				15665	3641	9754	9800	15910	15910					-0.07454065635693041
HAASNPPAQY	10	Unmodified	_HAASNPPAQY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;CEACAM6|p.S270T|1|0.25|ENSG00000086548|chr19:41762073-41762073|T/A|missense_variant;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.248779296875	2	528.24888	1054.48321	1.2348	0.00065227	-0.78445	-0.00041438	0.45033	0.00023788	528.2482803524998	19.641	0.34616	19.641	19.566	19.912	0					16	10	2	0	0	0	0.48965	1	5127	5127		46.457	10.838	1	83972			15666	1748;2353	9755	9801	15911	15911					-0.04185475256031168
HAASNPPAQY	10	Unmodified	_HAASNPPAQY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;CEACAM6|p.S270T|1|0.25|ENSG00000086548|chr19:41762073-41762073|T/A|missense_variant;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.2490234375	2	528.24888	1054.48321	0.20966	0.00011075	0.10031	5.2987E-05	0.30997	0.00016374	528.2489733684696	19.701	0.33051	19.701	19.586	19.917	0					23	11	3	0	0	0	0.46128	1	5371	5371		49.536	12.377	1	91705			15667	1748;2353	9755	9801	15912	15912					-0.04185475256031168
HAASNPPAQY	10	Unmodified	_HAASNPPAQY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;CEACAM6|p.S270T|1|0.25|ENSG00000086548|chr19:41762073-41762073|T/A|missense_variant;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2489013671875	2	528.24888	1054.48321	1.7483	0.00092354	-2.3804	-0.0012575	-0.63213	-0.00033392	528.24757472075	19.918	0.47175	19.918	19.758	20.229	0					24	9	3	0	0	0	0.22691	1	6364	6364		76.17	23.871	1	727020			15668	1748;2353	9755	9801	15913	15913					-0.04185475256031168
HAASNPPAQY	10	Unmodified	_HAASNPPAQY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;CEACAM6|p.S270T|1|0.25|ENSG00000086548|chr19:41762073-41762073|T/A|missense_variant;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2490844726562	2	528.24888	1054.48321	1.2543	0.00066256	-0.1662	-8.7796E-05	1.0881	0.00057476	528.248809693928	19.803	0.36492	19.803	19.658	20.023	0					14	8	2	0	0	0	0.38194	1	5415	5415		58.23	8.2054	1	82681			15669	1748;2353	9755	9801	15914	15914					-0.04185475256031168
HAASNPPAQY	10	Unmodified	_HAASNPPAQY_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;CEACAM6|p.S270T|1|0.25|ENSG00000086548|chr19:41762073-41762073|T/A|missense_variant;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2492065429688	2	528.24888	1054.48321	1.6291	0.00086059	-1.4189	-0.00074951	0.21029	0.00011109	528.2481456633063	19.915	0.57042	19.915	19.723	20.294	0					37	11	4	0	0	0	0.12763	1	6235	6235		90.601	16.084	1	804880			15670	1748;2353	9755	9801	15915	15915					-0.04185475256031168
HAAVPTPGY	9	Unmodified	_HAAVPTPGY_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7315673828125	2	456.732335	911.450116	0.22713	0.00010374	-0.86725	-0.0003961	-0.64013	-0.00029237	456.7319177793607	27.521	0.47017	27.521	27.14	27.61	0					21	11	2	0	0	0	0.39123	1	9498	9498		42.474	17.024	1	169600			15671	5484	9756	9802	15916	15916					-0.009150573080887625
HAAVPTPGY	9	Unmodified	_HAAVPTPGY_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.73248291015625	2	456.732335	911.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.626	1	27.626	27.126	28.126	0								0	0	0	0.35507	1	9672	9672		24.203	4.8428	1				15672	5484	9756	9802	15917	15917					-0.009150573080887625
HACGVIATI	9	Unmodified	_HACGVIATI_					0	0	0		ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7363586425781	2	442.736563	883.458573	-0.34411	-0.00015235	-0.30925	-0.00013692	-0.65336	-0.00028927	442.73651480615325	34.729	0.85647	34.729	34.6	35.457	0					47	22	3	0	0	0	0.14734	1	12952	12952		68.485	10.673	1	264990			15673	6978	9757	9803	15918	15918					0.012181733368720415
HADASSKVL	9	Unmodified	_HADASSKVL_					0	0	0		ENST00000339310.7_1_10:103343400-103347291:-|nuORF;ENSG00000166169|ENST00000370162|POLL	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2480163574219	2	464.248349	926.482145	0.093673	4.3488E-05	-0.44858	-0.00020825	-0.35491	-0.00016477	464.24786619234516	18.703	0.13815	18.703	18.612	18.75	0					6	3	2	0	0	0	0.078509	1	5529	5529		85.161	49.543	1	75588			15674	5866	9758	9804	15919	15919					0.015963103750550545
HADASSKVL	9	Unmodified	_HADASSKVL_					0	0	0		ENST00000339310.7_1_10:103343400-103347291:-|nuORF;ENSG00000166169|ENST00000370162|POLL	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.24822998046875	2	464.248349	926.482145	0.56587	0.00026271	-1.1538	-0.00053566	-0.58795	-0.00027295	464.2481035279131	18.726	0.21564	18.726	18.6	18.816	0					12	5	4	0	0	0	0.19605	1	5527	5527		62.107	17.991	1	274550			15675	5866	9758	9804	15920	15920					0.015963103750550545
HADASSKVL	9	Unmodified	_HADASSKVL_					0	0	0		ENST00000339310.7_1_10:103343400-103347291:-|nuORF;ENSG00000166169|ENST00000370162|POLL	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2481689453125	2	464.248349	926.482145	-0.14115	-6.553E-05	-0.51539	-0.00023927	-0.65654	-0.0003048	464.2481716203437	18.669	0.11662	18.669	18.561	18.677	0					6	2	3	0	0	0	0.037924	1	5759	5759		101.25	42.471	1	228040			15676	5866	9758	9804	15921	15921					0.015963103750550545
HADASSKVL	9	Unmodified	_HADASSKVL_					0	0	0		ENST00000339310.7_1_10:103343400-103347291:-|nuORF;ENSG00000166169|ENST00000370162|POLL	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2482604980469	2	464.248349	926.482145	-0.48259	-0.00022404	0.54172	0.00025149	0.059125	2.7449E-05	464.2486038522235	18.629	0.16357	18.629	18.522	18.685	0					6	3	2	0	0	0	0.056004	1	5625	5625		93.143	34.361	1	365110			15677	5866	9758	9804	15922	15922					0.015963103750550545
HADGTIVRY	9	Unmodified	_HADGTIVRY_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;IFT172|p.G252Afs*6|1|0.19|ENSG00000138002|chr2:27481076-27481076|C/-|frameshift_variant;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.W628Qfs*6|1|0.03|ENSG00000138002|chr2:27465466-27465467|-/CATTG|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2672119140625	2	516.267073	1030.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.643	1	23.643	23.143	24.143	0								0	0	0	0.0095889	1	6871	6871		110.12	53.399	1				15678	4216	9759	9805	15923	15923					0.0055540164069043385
HADGTIVRY	9	Unmodified	_HADGTIVRY_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;IFT172|p.G252Afs*6|1|0.19|ENSG00000138002|chr2:27481076-27481076|C/-|frameshift_variant;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.W628Qfs*6|1|0.03|ENSG00000138002|chr2:27465466-27465467|-/CATTG|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2677612304688	2	516.267073	1030.51959	0.87815	0.00045336	-0.38604	-0.0001993	0.49211	0.00025406	516.266899148903	23.872	0.51587	23.872	23.762	24.278	0					23	10	4	0	0	0	0.021961	1	8270	8270		118.74	62.022	1	1916500			15679	4216	9759	9805	15924	15924					0.0055540164069043385
HADGTIVRY	9	Unmodified	_HADGTIVRY_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;IFT172|p.G252Afs*6|1|0.19|ENSG00000138002|chr2:27481076-27481076|C/-|frameshift_variant;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.W628Qfs*6|1|0.03|ENSG00000138002|chr2:27465466-27465467|-/CATTG|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2672729492188	2	516.267073	1030.51959	1.1504	0.0005939	-0.69787	-0.00036029	0.45251	0.00023361	516.2667170562477	23.698	0.26216	23.698	23.614	23.877	0					13	6	3	0	0	0	0.10915	1	7282	7282		77.318	27.876	1	159840			15680	4216	9759	9805	15925	15925					0.0055540164069043385
HADGTIVRY	9	Unmodified	_HADGTIVRY_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;IFT172|p.G252Afs*6|1|0.19|ENSG00000138002|chr2:27481076-27481076|C/-|frameshift_variant;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.W628Qfs*6|1|0.03|ENSG00000138002|chr2:27465466-27465467|-/CATTG|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2672119140625	2	516.267073	1030.51959	0.18729	9.6694E-05	0.13536	6.9883E-05	0.32266	0.00016658	516.2671222626341	23.837	0.46417	23.837	23.732	24.196	0					23	9	3	0	0	0	0.012231	1	8149	8149		136.27	69.839	1	2066900			15681	4216	9759	9805	15926	15926					0.0055540164069043385
HADPRIQGY	9	Unmodified	_HADPRIQGY_					0	0	0		ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7649536132812	2	528.764697	1055.51484	1.9982	0.0010566	-1.1255	-0.00059515	0.8727	0.00046145	528.7639552878306	23.115	0.19123	23.115	23.018	23.21	0					9	4	3	0	0	0	0.30951	1	7596	7596		49.442	11.63	1	235320			15682	1391	9760	9806	15927	15927					-0.010694825020891585
HADPRIQGY	9	Unmodified	_HADPRIQGY_					0	0	0		ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.765380859375	2	528.764697	1055.51484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.846	1	22.846	22.346	23.346	0								0	0	0	0.3428	1	6784	6784		26.693	2.4902	1				15683	1391	9760	9806	15928	15928					-0.010694825020891585
HADPRIQGY	9	Unmodified	_HADPRIQGY_					0	0	0		ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.764892578125	2	528.764697	1055.51484	0.90614	0.00047913	-0.35539	-0.00018792	0.55075	0.00029122	528.7644871332967	23.02	0.26812	23.02	22.911	23.179	0					11	5	3	0	0	0	0.21263	1	7884	7884		60.118	34.544	1	471070			15684	1391	9760	9806	15929	15929					-0.010694825020891585
HADPRIQGY	9	Unmodified	_HADPRIQGY_					0	0	0		ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.765380859375	2	528.764697	1055.51484	0.71934	0.00038036	0.24059	0.00012721	0.95993	0.00050758	528.7648661913686	22.999	0.26145	22.999	22.889	23.15	0					12	5	3	0	0	0	0.24095	1	7743	7743		56.721	15.943	1	496890			15685	1391	9760	9806	15930	15930					-0.010694825020891585
HADVGKEL	8	Unmodified	_HADVGKEL_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant;ENST00000438741.1_1_3:10076402-10082221:+|nuORF	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7292785644531	2	434.729792	867.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.57	1	19.57	19.07	20.07	0								0	0	0	1.7419	1	5086	5086		79.451	8.1553	1				15686	4622	9761	9807	15931	15931					0.006006388292917109
HADVGKEL	8	Unmodified	_HADVGKEL_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant;ENST00000438741.1_1_3:10076402-10082221:+|nuORF	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7295227050781	2	434.729792	867.445031	0.10097	4.3896E-05	-0.59389	-0.00025818	-0.49292	-0.00021429	434.7294088167968	19.894	0.1591	19.894	19.795	19.954	0					6	3	2	0	0	0	0.34592	1	6095	6095		77.318	34.921	1	368870			15687	4622	9761	9807	15932	15932					0.006006388292917109
HAEATIVVM	9	Unmodified	_HAEATIVVM_					0	0	0		ENSG00000132698|ENST00000361084|RAB25;ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENSG00000132698|ENST00000361084|RAB25	ENSG00000132698|ENST00000361084|RAB25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7546691894531	2	485.754953	969.495352	-0.27409	-0.00013314	2.165	0.0010516	1.8909	0.00091851	485.7542700633467	34.995	0.35724	34.995	34.871	35.228	0					20	9	4	0	0	0	0.43426	1	13093	13093		38.806	0	1	261030			15688	3810	9762	9808	15933	15933					0.00938425162803469
HAEVVRVVY	9	Unmodified	_HAEVVRVVY_					0	0	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA;ENST00000523637.2_1_8:9953486-10177544:+|nuORF	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.3015747070312	2	536.300916	1070.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.293	1	28.293	27.793	28.793	0								0	0	0	0.17415	1	9982	9982		24.519	8.8774	1				15689	6577	9763	9809	15934	15934					0.05480851571473977
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7572021484375	2	548.756538	1095.49852	1.616	0.00088677	-0.67762	-0.00037185	0.93835	0.00051492	548.7562124398618	19.768	0.13774	19.768	19.736	19.873	0					7	4	2	0	0	0	0.025517	1	5187	5187		113.41	57.907	1	138670			15690	1963	9764	9810	15935	15935					-0.04540608458864881
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7570190429688	2	548.756538	1095.49852	1.8443	0.0010121	-0.78146	-0.00042883	1.0628	0.00058323	548.7560124684454	20.118	0.38296	20.118	20.019	20.402	0					21	8	4	0	0	0	0.01873	1	6198	6198		124.08	67.359	1	1067300			15691	1963	9764	9810	15936	15936					-0.04540608458864881
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7587280273438	2	548.756538	1095.49852	4.6705	0.002563	-2.4075	-0.0013211	2.263	0.0012419	548.75586732381	19.834	0.097109	19.834	19.763	19.86	0					5	3	2	0	0	0	0.016683	1	5444	5444		127.46	75.163	1	72692			15692	1963	9764	9810	15937	15937					-0.04540608458864881
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7569580078125	2	548.756538	1095.49852	0.59271	0.00032525	0.017534	9.6218E-06	0.61024	0.00033487	548.7566367385091	20.037	0.2176	20.037	19.927	20.145	0					9	4	3	0	0	0	0.0012031	1	6420	6420		180.93	101.47	1	740570			15693	1963	9764	9810	15938	15938					-0.04540608458864881
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.757080078125	2	548.756538	1095.49852	1.9087	0.0010474	-0.3253	-0.00017851	1.5834	0.00086888	548.7566633300759	19.897	0.1551	19.897	19.794	19.949	0					6	3	2	0	0	0	0.037569	1	5483	5483		101.6	35.171	1	66653			15694	1963	9764	9810	15939	15939					-0.04540608458864881
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.757568359375	2	548.756538	1095.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.905	1	19.905	19.405	20.405	0								0	0	0	0.12601	1	5497	5497		65.465	16.024	1				15695	1963	9764	9810	15940	15940					-0.04540608458864881
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7564086914062	2	548.756538	1095.49852	0.51232	0.00028114	0.14085	7.7295E-05	0.65317	0.00035843	548.7565407380632	20.051	0.46641	20.051	19.944	20.41	0					19	9	3	0	0	0	0.0049871	1	6295	6295		158.07	81.3	1	996790			15696	1963	9764	9810	15941	15941					-0.04540608458864881
HAFESSQKY	9	Unmodified	_HAFESSQKY_					0	0	0		YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	YPEL1|p.E102A|1|0.07|ENSG00000100027|chr22:21701184-21701184|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7567749023438	2	548.756538	1095.49852	1.8541	0.0010175	-1.4529	-0.00079729	0.4012	0.00022016	548.7556733808666	20.036	0.26564	20.036	19.927	20.193	0					8	5	2	0	0	0	0.11898	1	6308	6308		75.043	8.614	1	896030			15697	1963	9764	9810	15942	15942					-0.04540608458864881
HAFGGNKASY	10	Unmodified	_HAFGGNKASY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.251708984375	2	526.251423	1050.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.974	1	19.974	19.474	20.474	0								0	0	0	0.021229	1	6120	6120		98.629	37.657	1				15698	1411	9765	9811	15943	15943					-0.03493171393438388
HAFGGNKASY	10	Unmodified	_HAFGGNKASY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2517700195312	2	526.251423	1050.48829	0.96721	0.000509	-0.44727	-0.00023538	0.51994	0.00027362	526.2511791388835	19.834	0.16957	19.834	19.775	19.944	0					5	3	2	0	0	0	0.029105	1	6347	6347		118.74	69.302	1	452670			15699	1411	9765	9811	15944	15944					-0.03493171393438388
HAFPLADDR	9	Unmodified	_HAFPLADDR_					0	0	0			REV__ENST00000415995.5_1_3:48636563-48647036:-|nuORF	REV__ENST00000415995.5_1_3:48636563-48647036:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2603759765625	2	521.259248	1040.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.883	1	15.883	15.383	16.383	0								0	0	0	0.29774	1	3649	3649		35.618	8.9254	1		+		15700	12892	9766	9812	15945	15945					-0.01468884876408083
HAFQKRGA	8	Unmodified	_HAFQKRGA_					0	0	0			REV__MYO18A|p.R691H|1|0.31|ENSG00000196535|chr17:29115819-29115819|C/T|missense_variant	REV__MYO18A|p.R691H|1|0.31|ENSG00000196535|chr17:29115819-29115819|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7510986328125	2	457.751393	913.488233	-2.6435	-0.0012101	1.0131	0.00046377	-1.6303	-0.00074629	457.751838410816	14.336	0.45784	14.336	13.978	14.436	0					36	19	2	0	0	0	0.74117	1	3057	3057		28.254	0	1	485830	+		15701	20910	9767	9813	15946	15946					0.028028733972291775
HAGASIPI	8	Unmodified	_HAGASIPI_					0	0	0			REV__ENSG00000182578|ENST00000675795|CSF1R	REV__ENSG00000182578|ENST00000675795|CSF1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.21636962890625	2	383.216321	764.418088	0.088421	3.3884E-05	-0.13227	-5.0688E-05	-0.04385	-1.6804E-05	383.2163100137278	29.23	0.3323	29.23	29.073	29.406	0					17	8	3	0	0	0	0.67475	1	10411	10411		37.028	1.8278	1	428940	+		15702	16890	9768	9814	15947	15947					0.0264557500876208
HAGLVYEY	8	Unmodified	_HAGLVYEY_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.23126220703125	2	476.232168	950.449782	0.97595	0.00046478	-0.91202	-0.00043433	0.063926	3.0444E-05	476.2316776945452	34.301	0.23518	34.301	34.227	34.462	0					20	11	3	0	0	0	0.72892	1	11198	11198		29.842	0	1	109580			15703	3762	9769	9815	15948	15948					-0.027424770279594668
HAGLVYEY	8	Unmodified	_HAGLVYEY_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.23248291015625	2	476.232168	950.449782	0.59697	0.0002843	-0.65927	-0.00031397	-0.062306	-2.9672E-05	476.23185727974925	34.564	0.40638	34.564	34.465	34.871	0					20	10	3	0	0	0	0.55361	1	12872	12872		54.765	20.592	1	436310			15704	3762	9769	9815	15949	15949					-0.027424770279594668
HAGLVYEY	8	Unmodified	_HAGLVYEY_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2314758300781	2	476.232168	950.449782	-0.11875	-5.6552E-05	-0.4445	-0.00021169	-0.56325	-0.00026824	476.2319153500825	34.592	0.94203	34.592	34.466	35.408	0					62	26	5	0	0	0	0.4434	2	13316	13316;13497		65.897	26.876	1	2869300			15705	3762	9769	9815	15950;15951	15950					-0.027424770279594668
HAGLVYEY	8	Unmodified	_HAGLVYEY_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2320251464844	2	476.232168	950.449782	-0.62559	-0.00029793	0.20707	9.8614E-05	-0.41852	-0.00019931	476.2321705336913	34.543	1.2587	34.543	34.344	35.603	0					64	25	6	0	0	0	0.34071	1	13217	13217		77.944	38.922	1	4595900			15706	3762	9769	9815	15952	15952					-0.027424770279594668
HAGPTAHEL	9	Unmodified	_HAGPTAHEL_					0	0	0		TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant;ENSG00000135966|ENST00000393359|TGFBRAP1	TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant	TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7326965332031	2	466.732866	931.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.163	1	19.163	18.663	19.663	0								0	0	0	0.23459	1	6010	6010		45.952	11.779	1				15707	4041	9770	9816	15953	15953					-0.017288429391896898
HAGPVINTL	9	Unmodified	_HAGPVINTL_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2613220214844	2	461.261259	920.507966	0.10837	4.9989E-05	0.21759	0.00010037	0.32596	0.00015035	461.2613111593203	31.629	0.30933	31.629	31.501	31.811	0					12	7	3	0	0	0	0.39215	1	11526	11526		42.396	0	1	176870			15708	691	9771	9817	15954	15954					0.044532046173458184
HAGPVINTL	9	Unmodified	_HAGPVINTL_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.260986328125	2	461.261259	920.507966	-0.15462	-7.1321E-05	-0.84891	-0.00039157	-1.0035	-0.00046289	461.2608524832925	31.348	0.22047	31.348	31.266	31.487	0					10	5	3	0	0	0	0.39215	1	10792	10792		42.396	5.237	1	160690			15709	691	9771	9817	15955	15955					0.044532046173458184
HAGPVINTL	9	Unmodified	_HAGPVINTL_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2611389160156	2	461.261259	920.507966	-0.46057	-0.00021244	0.29059	0.00013404	-0.16997	-7.8402E-05	461.26144189939293	31.574	0.41475	31.574	31.42	31.835	0					18	8	3	0	0	0	0.055856	1	11805	11805		93.195	10.89	1	1495000			15710	691	9771	9817	15956	15956					0.044532046173458184
HAGSLLLKM	9	Unmodified	_HAGSLLLKM_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.28118896484375	2	485.281137	968.547722	0.34864	0.00016919	0.07102	3.4465E-05	0.41966	0.00020365	485.2811273024727	33.239	0.16857	33.239	33.159	33.327	0					6	4	2	0	0	0	0.087861	1	12284	12284		82.241	10.945	1	59686			15711	5044;7071	9772	9818	15957	15957					0.062190082963979876
HAHGDAAAMHL	11	Unmodified	_HAHGDAAAMHL_					0	0	0			REV__ENSG00000143458|ENST00000368918|GABPB2	REV__ENSG00000143458|ENST00000368918|GABPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.7613525390625	2	565.761632	1129.50871	0.29278	0.00016564	-0.91531	-0.00051785	-0.62253	-0.0003522	565.7611627749777	22.553	0.14097	22.553	22.463	22.604	0					8	3	3	0	0	0	0.5473	1	7355	7355		40.778	0.71999	1	244630	+		15712	15195	9773	9819	15958	15958					-0.05086324005287679
HAHHSPLPCD	10	Unmodified	_HAHHSPLPCD_					0	0	0		ENST00000325147.13_1_11:203487-204003:-|nuORF;ENST00000433234.2_11:203487-204043:-|nuORF	ENST00000325147.13_1_11:203487-204003:-|nuORF	ENST00000325147.13_1_11:203487-204003:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2531127929688	2	557.248357	1112.48216	4.4415	0.002475	4.0346	0.0022483	8.4761	0.0047233	557.2503856917604	19.629	0.16847	19.629	19.528	19.697	0					7	5	2	0	0	0	0.58896	1	5361	5361		35.618	6.4687	1	49891			15713	8642	9774	9820	15959	15959					-0.0695801289659812
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2755737304688	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.526	1	18.526	18.026	19.026	0								0	0	0	0.00042866	1	4624	4624		131.03	67.725	1				15714	6851	9775	9821	15960	15960					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2750244140625	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.834	1	18.834	18.334	19.334	0								0	0	0	0.00016232	1	5580	5580		132.76	68.551	1				15715	6851	9775	9821	15961	15961					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.18585205078125	3	357.185691	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.82	1	18.82	18.32	19.32	0								0	0	0	0.082437	1	5574	5574		93.143	50.279	1				15716	6851	9775	9821	15962	15962					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.275146484375	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.561	1	18.561	18.061	19.061	0								0	0	0	0.072369	1	4871	4871		79.713	44.512	1				15717	6851	9775	9821	15963	15963					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2750854492188	2	535.274898	1068.53524	1.2039	0.00064444	-0.56451	-0.00030217	0.63943	0.00034227	535.2745236740207	18.754	0.38968	18.754	18.661	19.05	0					16	8	3	0	0	0	0.015496	1	5806	5806		129.42	67.314	1	424980			15718	6851	9775	9821	15964	15964					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2759399414062	2	535.274898	1068.53524	2.1193	0.0011344	-0.48804	-0.00026123	1.6313	0.00087319	535.274633277235	18.599	0.1534	18.599	18.551	18.704	0					6	4	2	0	0	0	0.15163	1	4900	4900		67.494	26.716	1	65820			15719	6851	9775	9821	15965	15965					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2753295898438	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.612	1	18.612	18.112	19.112	0								0	0	0	0.080575	1	4892	4892		77.318	43.145	1				15720	6851	9775	9821	15966	15966					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2752685546875	2	535.274898	1068.53524	0.70645	0.00037814	0.093584	5.0093E-05	0.80003	0.00042824	535.2749948573238	18.774	0.1485	18.774	18.669	18.818	0					10	3	4	0	0	0	0.013878	1	5673	5673		132.76	72.64	1	626020			15721	6851	9775	9821	15967	15967					0.0037168815772474773
HAHVDKVTY	9	Unmodified	_HAHVDKVTY_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2749633789062	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.788	1	18.788	18.288	19.288	0								0	0	0	0.099216	1	5691	5691		71.877	31.099	1				15722	6851	9775	9821	15968	15968					0.0037168815772474773
HAIKSGMDM	9	Unmodified	_HAIKSGMDM_					0	0	0		MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant;MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant;nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant	MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2305908203125	2	495.230787	988.447022	0.53216	0.00026354	-1.2939	-0.00064076	-0.76171	-0.00037722	495.23021371598156	21.289	0.1521	21.289	21.187	21.34	0					9	3	3	0	0	0	0.12834	1	6733	6733		72.879	26.927	1	240760			15723	3016	9776	9822	15969	15969					-0.04766391748762544
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.7658081054688	2	535.765329	1069.5161	2.5339	0.0013576	-1.4414	-0.00077224	1.0925	0.00058535	535.7647563402312	23.277	0.34045	23.277	23.091	23.431	0					14	9	2	0	0	0	0.095583	1	6704	6704		80.455	44.836	1	65043			15724	6049	9777	9823	15970	15970					-0.01587307729209897
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7664794921875	2	535.765329	1069.5161	1.9208	0.0010291	-0.93892	-0.00050304	0.98192	0.00052608	535.7650176005434	23.67	0.67017	23.67	23.234	23.904	0					38	15	3	0	0	0	0.10915	2	7898	7720;7898		77.318	34.921	1	526740			15725	6049	9777	9823	15971;15972	15972					-0.01587307729209897
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7657470703125	2	535.765329	1069.5161	2.1852	0.0011707	-1.9056	-0.0010209	0.27963	0.00014981	535.7645579863893	23.622	0.66547	23.622	23.222	23.887	0					38	15	3	0	0	0	0.035062	1	7818	7818		104.06	47.336	1	577870			15726	6049	9777	9823	15973	15973					-0.01587307729209897
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7655029296875	2	535.765329	1069.5161	1.2351	0.00066171	-1.3193	-0.00070683	-0.084214	-4.5119E-05	535.764961986221	23.568	0.86734	23.568	23.111	23.979	0					53	17	4	0	0	0	0.037924	2	8172	8006;8172		101.25	51.811	1	1421400			15727	6049	9777	9823	15974;15975	15975					-0.01587307729209897
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7651977539062	2	535.765329	1069.5161	2.1426	0.0011479	-1.0366	-0.00055536	1.106	0.00059254	535.7648255690374	23.409	0.49162	23.409	23.136	23.627	0					20	11	2	0	0	0	0.18416	1	7068	7068		63.534	19.417	1	112150			15728	6049	9777	9823	15976	15976					-0.01587307729209897
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7658081054688	2	535.765329	1069.5161	0.70419	0.00037728	-0.48662	-0.00026071	0.21757	0.00011657	535.7653375507193	23.588	0.85941	23.588	23.038	23.897	0					51	17	4	0	0	0	0.056004	2	8054	7888;8054		93.143	45.228	1	1360400			15729	6049	9777	9823	15977;15978	15978					-0.01587307729209897
HAIMRSPQM	9	Oxidation (M)	_HAIMRSPQM(Oxidation (M))_		HAIMRSPQM(1)		HAIM(-36)RSPQM(36)	0	0	1		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7642211914062	2	543.762786	1085.51102	1.8333	0.00099689	0.35829	0.00019482	2.1916	0.0011917	543.7631485547024	18.58	0.40218	18.58	18.309	18.711	0					14	9	2	0	0	0	0.07136	1	5431	5431		87.696	41.744	2	96122			15730	6049	9777	9824	15979	15979		248			-0.02831611591818728
HAIPPTLAM	9	Unmodified	_HAIPPTLAM_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.759765625	2	475.760038	949.505523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.052	1	36.052	35.552	36.552	0								0	0	0	0.32356	1	12881	12881		30.504	3.7075	1				15731	3404	9778	9825	15980	15980					0.02875032888016449
HAKDTGEGY	9	Unmodified	_HAKDTGEGY_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2200927734375	2	489.219788	976.425024	-0.42735	-0.00020907	0.79659	0.00038971	0.36924	0.00018064	489.22018359700405	14.652	0.21054	14.652	14.566	14.777	0					9	5	3	0	0	0	0.19605	1	3625	3625		62.107	30.153	1	329590			15732	4225	9779	9826	15981	15981					-0.0641315690132842
HAKEENLSM	9	Unmodified	_HAKEENLSM_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF	nc|ENSG00000140416|P09493-2|TPM1	nc|ENSG00000140416|P09493-2|TPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7511596679688	2	529.750398	1057.48624	1.1562	0.00061251	0.32641	0.00017292	1.4826	0.00078542	529.7507410587984	20.287	0.12337	20.287	20.197	20.321	0					7	4	2	0	0	0	0.16806	1	5396	5396		65.465	8.7443	1	90907			15733	11552	9780	9827	15982	15982					-0.04019968193551904
HAKEENLSM	9	Unmodified	_HAKEENLSM_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF	nc|ENSG00000140416|P09493-2|TPM1	nc|ENSG00000140416|P09493-2|TPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7510375976562	2	529.750398	1057.48624	2.3362	0.0012376	-1.6489	-0.00087348	0.68731	0.0003641	529.7498710423959	20.617	0.3829	20.617	20.433	20.816	0					14	8	3	0	0	0	0.28897	1	6435	6435		51.193	1.7511	1	1534000			15734	11552	9780	9827	15983	15983					-0.04019968193551904
HAKEENLSM	9	Unmodified	_HAKEENLSM_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF	nc|ENSG00000140416|P09493-2|TPM1	nc|ENSG00000140416|P09493-2|TPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7509765625	2	529.750398	1057.48624	0.73114	0.00038732	0.53917	0.00028563	1.2703	0.00067295	529.7508975877117	20.543	0.215	20.543	20.443	20.658	0					10	4	3	0	0	0	0.13726	1	6558	6558		70.816	21.375	1	1129600			15735	11552	9780	9827	15984	15984					-0.04019968193551904
HAKQHRSL	8	Unmodified	_HAKQHRSL_					0	0	0			REV__nc|ENSG00000204644|Q9NU63|ZFP57	REV__nc|ENSG00000204644|Q9NU63|ZFP57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7766418457031	2	488.7754	975.536246	-1.2499	-0.00061093	0.87111	0.00042578	-0.3788	-0.00018515	488.7755174795262	27.99	0.22361	27.99	27.903	28.126	0					14	8	2	0	0	0	0.66372	1	8983	8983		38.806	1.647	1	113610	+		15736	17495	9781	9828	15985	15985					0.04749947317282022
HAKYTPSIT	9	Unmodified	_HAKYTPSIT_					0	0	0		ENST00000517813.1_1_8:142202910-142203504:+|nuORF	ENST00000517813.1_1_8:142202910-142203504:+|nuORF	ENST00000517813.1_1_8:142202910-142203504:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2729797363281	2	509.271824	1016.5291	1.0758	0.00054788	0.042175	2.1479E-05	1.118	0.00056935	509.27220161662063	23.811	0.11196	23.811	23.751	23.863	0					4	2	2	0	0	0	0.2873	1	7946	7946		51.335	1.8939	1	114300			15737	10274	9782	9829	15986	15986					0.02149169926178729
HALASHPR	8	Unmodified	_HALASHPR_					0	0	0			REV__ENST00000251241.8_1_17:57685452-57685632:+|nuORF	REV__ENST00000251241.8_1_17:57685452-57685632:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7435302734375	2	444.743568	887.472583	-0.2034	-9.0463E-05	-0.20869	-9.2812E-05	-0.41209	-0.00018327	444.7437429558177	15.156	0.35545	15.156	15.045	15.4	0					10	7	2	0	0	0	0.72381	1	4075	4075		30.504	3.7075	1	120710	+		15738	17967	9783	9830	15987	15987					0.02434586880178813
HALGGSSAL	9	Unmodified	_HALGGSSAL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.7166442871094	2	406.716685	811.418816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.095	1	24.095	23.595	24.595	0								0	0	0	0.11313	1	8263	8263		68.485	18.46	1				15739	5243	9784	9831	15988	15988					0.0055636965781786785
HALLWSAGVL	10	Unmodified	_HALLWSAGVL_					0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7910766601562	2	533.805834	1065.59712	1.8104	0.00096641	-0.91268	-0.00048719	0.89774	0.00047922	533.80537006192	44.931	0.25513	44.931	44.837	45.092	0					21	10	3	0	0	0	0.61887	1	18059	18059		31.955	6.5047	1	233700	+		15740	17069	9785	9832	15989	15989					0.06694039576859723
HALRQGTL	8	Unmodified	_HALRQGTL_					0	0	0			REV__ENST00000491005.5_1_1:220324899-220327342:-|nuORF	REV__ENST00000491005.5_1_1:220324899-220327342:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.2596740722656	2	448.259051	894.503549	-0.94722	-0.0004246	0.80775	0.00036208	-0.13947	-6.252E-05	448.2592988950698	49.788	0.27304	49.788	49.676	49.949	0					39	17	3	0	0	0	0.77246	1	15014	15014		24.203	0	1	130780	+		15741	14226	9786	9833	15990	15990					0.05207740194430244
HALVDSTAY	9	Unmodified	_HALVDSTAY_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.F1125Lfs*31|1|0.34|ENSG00000117983|chr11:1238947-1238948|TC/-|frameshift_variant;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7401428222656	2	488.740357	975.46616	-0.51646	-0.00025241	0.14518	7.0957E-05	-0.37127	-0.00018146	488.7405082549643	29.507	0.25855	29.507	29.456	29.715	0					8	5	2	0	0	0	0.30268	1	10828	10828		50.025	2.1089	1	350200			15742	3057;11390	9787	9834	15991	15991					-0.022553958618573233
HAMGVWLASSM	11	2 Oxidation (M)	_HAM(Oxidation (M))GVWLASSM(Oxidation (M))_		HAM(1)GVWLASSM(1)		HAM(57)GVWLASSM(57)	0	0	2		LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|33|3|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|33|3|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|33|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	611.2725219726562	2	611.273183	1220.53181	-1.98	-0.0012103	1.2578	0.00076884	-0.72222	-0.00044147	611.2740132185714	31.556	0.1309	31.556	31.463	31.593	0					9	3	3	0	0	0	0.35272	1	10869	10869		56.721	10.264	1	137470			15743	11337	9788	9835	15992	15992		441;442			-0.06963066002822416
HAMIMGSYEL	10	Unmodified	_HAMIMGSYEL_					0	0	0			REV__ENST00000581417.5_1_17:62083756-62084088:-|nuORF	REV__ENST00000581417.5_1_17:62083756-62084088:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.26318359375	2	576.264827	1150.5151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.133	1	30.133	29.633	30.633	0								0	0	0	0.39244	1	10224	10224		32.812	2.4947	1		+		15744	20455	9789	9836	15993	15993					-0.054135668887738575
HANDDKSSL	9	Unmodified	_HANDDKSSL_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7307434082031	2	493.73052	985.446488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.778	1	14.778	14.278	15.278	0								0	0	0	0.077333	1	3674	3674		78.264	30.348	1				15745	6784	9790	9837	15994	15994					-0.04681771872617446
HANDDKSSL	9	Unmodified	_HANDDKSSL_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7304992675781	2	493.73052	985.446488	-0.049576	-2.4477E-05	0.22491	0.00011104	0.17533	8.6567E-05	493.730615477677	14.705	0.11799	14.705	14.646	14.764	0					4	2	2	0	0	0	0.090954	1	3883	3883		81.525	30.19	1	217150			15746	6784	9790	9837	15995	15995					-0.04681771872617446
HANDDKSSL	9	Unmodified	_HANDDKSSL_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.73004150390625	2	493.73052	985.446488	-0.62102	-0.00030662	-0.25698	-0.00012688	-0.878	-0.0004335	493.7303763662885	14.669	0.16869	14.669	14.609	14.777	0					5	3	2	0	0	0	0.21419	1	3712	3712		59.931	20.678	1	197470			15747	6784	9790	9837	15996	15996					-0.04681771872617446
HANLARAL	8	Unmodified	_HANLARAL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2536926269531	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.564	1	22.564	22.064	23.064	0								0	0	0	1.7419	1	7348	7348		26.796	0	1				15748	4171	9791	9838	15997	15997					0.05531757539984028
HAPAKTLQY	9	Unmodified	_HAPAKTLQY_					0	0	0			REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7800903320312	2	514.779816	1027.54508	-0.49253	-0.00025355	0.68224	0.0003512	0.18971	9.7658E-05	514.7802316838367	27.642	0.35693	27.642	27.49	27.846	0					17	7	3	0	0	0	0.25109	1	10023	10023		55.504	0	1	721340	+		15749	15147	9792	9839	15998	15998					0.03240876163113171
HAPAPTTRL	9	Unmodified	_HAPAPTTRL_					0	0	0			REV__ENST00000590454.2_1_19:900936-902165:-|nuORF	REV__ENST00000590454.2_1_19:900936-902165:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2700500488281	2	482.272158	962.529764	-2.9219	-0.0014092	-2.2555	-0.0010877	-5.1774	-0.0024969	482.2712623909201	35.786	0.31641	35.786	35.638	35.954	0					26	12	4	0	0	0	0.43426	1	12746	12746		38.806	3.1879	1	241180	+		15750	20518	9793	9840	15999	15999					0.04700009365876667
HAPFTATSL	9	Unmodified	_HAPFTATSL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000530420.5_1_15:28896588-28900598:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000424611.5_1_15:20644728-20658919:-|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.74542236328125	2	472.745442	943.476331	-0.56031	-0.00026488	0.54972	0.00025988	-0.010587	-5.0048E-06	472.7456978656445	33.767	0.45837	33.767	33.609	34.067	0					26	12	3	0	0	0	0.2873	1	12489	12489		51.335	1.3109	1	1051500			15751	3560;9465	9794	9841	16000	16000					0.0023321186339444466
HAPGKGLSQS	10	Unmodified	_HAPGKGLSQS_					0	0	0		ENST00000528074.1_1_11:17098819-17099188:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;RPS13|p.M4I|1|0.27|ENSG00000110700|chr11:17077630-17077630|C/T|missense_variant	ENST00000528074.1_1_11:17098819-17099188:-|nuORF	ENST00000528074.1_1_11:17098819-17099188:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2589416503906	2	491.259248	980.503943	0.81076	0.00039829	-1.2759	-0.0006268	-0.46516	-0.00022851	491.2586508792405	14.655	0.41892	14.655	14.494	14.913	0					24	10	3	0	0	0	0.59277	1	3595	3595		35.152	0.97948	1	323760			15752	2635	9795	9842	16001	16001					0.012911151236153273
HAPHFQVSL	9	Unmodified	_HAPHFQVSL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2723388671875	2	518.272158	1034.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.51	1	33.51	33.01	34.01	0								0	0	0	0.080575	1	12745	12745		77.318	22.541	1				15753	6636	9796	9843	16002	16002					0.013880093659054182
HAPIETQQSM	10	Unmodified	_HAPIETQQSM_					0	0	0			REV__ENST00000508377.5_1_5:34839347-34845796:+|nuORF	REV__ENST00000508377.5_1_5:34839347-34845796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.2694702148438	2	571.268955	1140.52336	1.1064	0.00063208	-0.84304	-0.0004816	0.2634	0.00015047	571.2684464391084	33.16	0.16851	33.16	33.084	33.252	0					12	7	2	0	0	0	0.47859	1	10746	10746		47.657	6.8792	1	88705	+		15754	17535	9797	9844	16003	16003					-0.04128296647786556
HAPLLPDGQ	9	Unmodified	_HAPLLPDGQ_					0	0	0			REV__CTNND2|p.P446L|1|0.1|ENSG00000169862|chr5:11364731-11364731|G/A|missense_variant	REV__CTNND2|p.P446L|1|0.1|ENSG00000169862|chr5:11364731-11364731|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2509765625	2	474.250892	946.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.14	1	33.14	32.64	33.64	0								0	0	0	0.32356	1	11599	11599		30.504	1.3541	1		+		15755	12644	9798	9845	16004	16004					0.011846142376725766
HAQDYVLTY	9	Unmodified	_HAQDYVLTY_					0	0	0		ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2675170898438	2	555.266739	1108.51892	0.58764	0.0003263	-0.083707	-4.648E-05	0.50394	0.00027982	555.266761236773	37.148	0.23145	37.148	37.026	37.257	0					13	6	3	0	0	0	0.41113	1	14048	14048		40.778	6.6056	1	151190			15756	3938	9799	9846	16005	16005					-0.030994377990509747
HAQDYVLTY	9	Unmodified	_HAQDYVLTY_					0	0	0		ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.2672119140625	2	555.266739	1108.51892	1.6641	0.00092399	-0.80403	-0.00044645	0.86003	0.00047755	555.2663383562843	37.091	0.43622	37.091	36.991	37.428	0					39	13	5	0	0	0	0.1424	1	14477	14477		69.628	16.276	1	1049900			15757	3938	9799	9846	16006	16006					-0.030994377990509747
HAQDYVLTY	9	Unmodified	_HAQDYVLTY_					0	0	0		ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.2679443359375	2	555.266739	1108.51892	1.1335	0.00062938	-0.1222	-6.7856E-05	1.0113	0.00056153	555.2668056788334	36.885	0.21358	36.885	36.813	37.027	0					14	9	3	0	0	0	0.4966	1	13200	13200		32.812	4.5581	1	84891			15758	3938	9799	9846	16007	16007					-0.030994377990509747
HAQESVTLK	9	Unmodified	_HAQESVTLK_					0	0	0			REV__AKAP12|p.A352V|1|0.12|ENSG00000131016|chr6:151349446-151349446|C/T|missense_variant	REV__AKAP12|p.A352V|1|0.12|ENSG00000131016|chr6:151349446-151349446|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.77435302734375	2	506.774731	1011.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.418	1	19.418	18.918	19.918	0								0	0	0	0.16453	1	6135	6135		56.434	5.2411	1		+		15759	12124	9800	9847	16008	16008					0.02960268437857394
HAREWISP	8	Unmodified	_HAREWISP_					0	0	0		nc|ENSG00000080618|Q96IY4-2|CPB2;ENSG00000153002|ENST00000282957|CPB1;ENSG00000080618|ENST00000181383|CPB2;CON__Q2KIG3	nc|ENSG00000080618|Q96IY4-2|CPB2	nc|ENSG00000080618|Q96IY4-2|CPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2557067871094	2	498.256508	994.498464	-0.21965	-0.00010944	-1.3882	-0.00069166	-1.6078	-0.0008011	498.2557615178731	30.477	0.32722	30.477	30.352	30.68	0					13	8	2	0	0	0	0.5676	1	10395	10395		53.351	14.099	1	200140		+	15760	654	9801	9848	16009	16009					0.0009943633180000688
HARGHPLHG	9	Unmodified	_HARGHPLHG_					0	0	0		ENST00000257215.9_1_11:61488285-61488327:+|nuORF	ENST00000257215.9_1_11:61488285-61488327:+|nuORF	ENST00000257215.9_1_11:61488285-61488327:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2596435546875	2	491.259917	980.50528	-0.063281	-3.1088E-05	-1.4412	-0.00070798	-1.5044	-0.00073907	491.2592316621119	14.655	0.35004	14.655	14.463	14.813	0					17	7	3	0	0	0	0.30268	1	3792	3792		50.025	5.6474	1	264060			15761	8268	9802	9849	16010	16010					0.014247940030486461
HASDQNYNY	9	Unmodified	_HASDQNYNY_					0	0	0		ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant;ENSG00000168813|ENST00000355898|ZNF507;ENST00000586664.1_1_19:32873361-32873986:+|nuORF	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.225830078125	2	556.225602	1110.43665	1.4205	0.00079009	-0.49941	-0.00027778	0.92105	0.00051231	556.2252187041115	21.651	0.10846	21.651	21.616	21.724	0					5	3	2	0	0	0	0.38666	1	6008	6008		42.864	7.246	1	73822			15762	6126	9803	9850	16011	16011					-0.11414959878015907
HASDQNYNY	9	Unmodified	_HASDQNYNY_					0	0	0		ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant;ENSG00000168813|ENST00000355898|ZNF507;ENST00000586664.1_1_19:32873361-32873986:+|nuORF	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.2257080078125	2	556.225602	1110.43665	1.1299	0.00062846	-1.0682	-0.00059416	0.061665	3.4299E-05	556.225297618519	21.728	0.14852	21.728	21.671	21.82	0					5	3	2	0	0	0	0.42902	1	6362	6362		39.253	6.4404	1	90554			15763	6126	9803	9850	16012	16012					-0.11414959878015907
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.28570556640625	2	498.285266	994.555979	1.5413	0.00076799	-0.86323	-0.00043013	0.67803	0.00033785	498.28490647981755	30.411	0.28336	30.411	30.303	30.586	0					17	10	2	0	0	0	0.13726	1	9685	9685		70.816	24.844	1	199510			15764	5628	9804	9851	16013	16013					0.058482785373598745
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2850036621094	2	498.285266	994.555979	-0.022463	-1.1193E-05	-0.4299	-0.00021421	-0.45236	-0.0002254	498.28505410361265	30.656	0.71773	30.656	30.563	31.281	0					38	16	4	0	0	0	0.063171	1	11491	11491		90.601	41.065	1	3429700			15765	5628	9804	9851	16014	16014					0.058482785373598745
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2851257324219	2	498.285266	994.555979	-0.22485	-0.00011204	0.62389	0.00031088	0.39904	0.00019884	498.28546346912776	30.45	0.32722	30.45	30.352	30.68	0					13	8	2	0	0	0	0.18416	1	10379	10379		63.534	19.908	1	226880			15766	5628	9804	9851	16015	16015					0.058482785373598745
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2854309082031	2	498.285266	994.555979	-0.72886	-0.00036318	0.66019	0.00032896	-0.068672	-3.4218E-05	498.2856648884931	30.637	0.56442	30.637	30.529	31.093	0					24	11	3	0	0	0	0.13726	1	11375	11375		70.816	22.857	1	2579300			15767	5628	9804	9851	16016	16016					0.058482785373598745
HASESRVAL	9	Unmodified	_HASESRVAL_					0	0	0		ENST00000496906.1_1_9:35749376-35750743:+|nuORF;RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant;ENSG00000107185|ENST00000378078|RGP1	ENST00000496906.1_1_9:35749376-35750743:+|nuORF	ENST00000496906.1_1_9:35749376-35750743:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2588195800781	2	485.259248	968.503943	0.34759	0.00016867	0.13912	6.751E-05	0.48671	0.00023618	485.2592921392908	20.456	0.23839	20.456	20.356	20.594	0					8	5	2	0	0	0	0.12834	1	6339	6339		72.879	11.907	1	180640			15768	2472	9805	9852	16017	16017					0.018431151236200094
HASESRVAL	9	Unmodified	_HASESRVAL_					0	0	0		ENST00000496906.1_1_9:35749376-35750743:+|nuORF;RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant;ENSG00000107185|ENST00000378078|RGP1	ENST00000496906.1_1_9:35749376-35750743:+|nuORF	ENST00000496906.1_1_9:35749376-35750743:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.25927734375	2	485.259248	968.503943	-0.091414	-4.436E-05	1.1322	0.00054941	1.0408	0.00050505	485.25974651456124	20.357	0.26609	20.357	20.28	20.546	0					6	5	2	0	0	0	0.11898	1	6588	6588		75.043	6.2565	1	169930			15769	2472	9805	9852	16018	16018					0.018431151236200094
HASSPHAGV	9	Unmodified	_HASSPHAGV_					0	0	0			REV__ENST00000247668.6_1_9:139820478-139821042:+|nuORF	REV__ENST00000247668.6_1_9:139820478-139821042:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.71173095703125	2	431.711934	861.409314	-0.47291	-0.00020416	-0.27021	-0.00011665	-0.74312	-0.00032082	431.7118152877419	15.758	0.31596	15.758	15.698	16.014	0					10	6	3	0	0	0	0.39123	1	4238	4238		42.474	8.9589	1	164220	+		15770	17949	9806	9853	16019	16019					-0.026933986277185795
HASVAMRAM	9	Unmodified	_HASVAMRAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.23858642578125	2	487.238947	972.46334	0.38643	0.00018828	-0.4349	-0.0002119	-0.048471	-2.3617E-05	487.2386745132394	22.036	0.12962	22.036	21.932	22.061	0					5	3	2	0	0	0	0.034359	1	7093	7093		104.75	10.74	1	113080			15771	2167	9807	9854	16020	16020					-0.02399265792018923
HATALGYRK	9	Unmodified	_HATALGYRK_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.78497314453125	2	508.785433	1015.55631	-0.43479	-0.00022122	0.024158	1.2291E-05	-0.41064	-0.00020893	508.78543389234454	15.095	0.11022	15.095	15.046	15.156	0					10	5	2	0	0	0	0.26904	1	3380	3380		53.351	3.9099	1	195620	+		15772	15143	9808	9855	16021	16021					0.04915698257218537
HATALGYRK	9	Unmodified	_HATALGYRK_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.78558349609375	2	508.785433	1015.55631	-0.39803	-0.00020251	0.51144	0.00026021	0.1134	5.7698E-05	508.7857612172815	15.314	0.40475	15.314	15.212	15.617	0					17	8	3	0	0	0	0.1115	1	4171	4171		76.774	7.1465	1	1392000	+		15773	15143	9808	9855	16022	16022					0.04915698257218537
HATIVSEKL	9	Unmodified	_HATIVSEKL_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.28765869140625	2	499.287474	996.560395	1.5687	0.00078322	-0.8431	-0.00042095	0.72558	0.00036227	499.28690246489236	25.007	0.14544	25.007	24.931	25.077	0					6	4	2	0	0	0	0.099758	1	7475	7475		72.879	1.0018	1	147740			15774	4600	9809	9856	16023	16023					0.061977429602734446
HATIVSEKL	9	Unmodified	_HATIVSEKL_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.287353515625	2	499.287474	996.560395	0.57842	0.0002888	-0.72962	-0.00036429	-0.1512	-7.5494E-05	499.2869903556044	25.311	0.23277	25.311	25.209	25.442	0					13	5	3	0	0	0	0.0059342	1	8621	8621		150.36	76.107	1	688580			15775	4600	9809	9856	16024	16024					0.061977429602734446
HATIVSEKL	9	Unmodified	_HATIVSEKL_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2882385253906	2	499.287474	996.560395	3.3859	0.0016905	-2.3366	-0.0011666	1.0493	0.0005239	499.2861249378301	25.075	0.11233	25.075	25.004	25.116	0					6	3	2	0	0	0	0.032181	1	7747	7747		101.25	53.595	1	117130			15776	4600	9809	9856	16025	16025					0.061977429602734446
HATIVSEKL	9	Unmodified	_HATIVSEKL_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2870788574219	2	499.287474	996.560395	-0.012759	-6.3706E-06	-0.52357	-0.00026141	-0.53633	-0.00026778	499.28722327975134	25.316	0.17018	25.316	25.205	25.375	0					9	3	3	0	0	0	0.0034376	1	8957	8957		163.15	63.776	1	728900			15777	4600	9809	9856	16026	16026					0.061977429602734446
HATTALLHY	9	Unmodified	_HATTALLHY_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7725830078125	2	513.771991	1025.52943	1.9536	0.0010037	-1.1501	-0.0005909	0.80344	0.00041279	513.7719130260148	28.404	0.082882	28.404	28.351	28.434	0					4	2	2	0	0	0	0.16524	1	8871	8871		65.803	25.025	1	36817			15778	5371	9810	9857	16027	16027					0.017685896460534423
HATTALLHY	9	Unmodified	_HATTALLHY_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.771728515625	2	513.771991	1025.52943	1.4975	0.00076937	-0.71932	-0.00036957	0.77818	0.00039981	513.7715072758555	28.694	0.25941	28.694	28.575	28.835	0					10	6	2	0	0	0	0.043797	1	10145	10145		97.473	31.043	1	276280			15779	5371	9810	9857	16028	16028					0.017685896460534423
HATTALLHY	9	Unmodified	_HATTALLHY_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7718505859375	2	513.771991	1025.52943	0.64114	0.0003294	-0.37399	-0.00019215	0.26715	0.00013725	513.7717699282874	28.687	0.31298	28.687	28.581	28.894	0					11	6	3	0	0	0	0.021468	1	10555	10555		119.56	62.836	1	250850			15780	5371	9810	9857	16029	16029					0.017685896460534423
HATTHNAY	8	Unmodified	_HATTHNAY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.70977783203125	2	457.709391	913.404229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.142	1	14.142	13.642	14.642	0								0	0	0	1.7419	1	3382	3382		33.516	5.2613	1				15781	4582	9811	9858	16030	16030					-0.05593702490341457
HATTHNAY	8	Unmodified	_HATTHNAY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7092590332031	2	457.709391	913.404229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.076	1	14.076	13.576	14.576	0								0	0	0	1.7419	1	3572	3572		24.203	2.5004	1				15782	4582	9811	9858	16031	16031					-0.05593702490341457
HAVDVDSGNSY	11	Unmodified	_HAVDVDSGNSY_					0	0	0		MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;ENSG00000141503|ENST00000355280|MINK1	MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant	MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.251953125	2	582.251817	1162.48908	-0.17527	-0.00010205	0.84084	0.00048958	0.66557	0.00038753	582.2521025787241	24.611	0.15558	24.611	24.556	24.712	0					9	5	2	0	0	0	0.30836	1	7566	7566		61.691	20.265	1	118230			15783	4451	9812	9859	16032	16032					-0.08566421535033442
HAVDVDSGSVY	11	Unmodified	_HAVDVDSGSVY_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.7647705078125	2	574.76456	1147.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.88	1	29.88	29.38	30.38	0								0	0	0	0.34425	1	9466	9466		45.972	1.8554	1				15784	1466	9813	9860	16033	16033					-0.053289470125946536
HAVDVDSGSVY	11	Unmodified	_HAVDVDSGSVY_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.7650146484375	2	574.76456	1147.51457	-0.10651	-6.1217E-05	2.0981	0.0012059	1.9916	0.0011447	574.7659444216414	30.139	0.32779	30.139	30.038	30.366	0					15	8	2	0	0	0	0.37008	1	10837	10837		54.776	3.4409	1	273080			15785	1466	9813	9860	16034	16034					-0.053289470125946536
HAVDVDSGSVY	11	Unmodified	_HAVDVDSGSVY_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.7650756835938	2	574.76456	1147.51457	-0.19621	-0.00011278	0.84676	0.00048669	0.65055	0.00037391	574.765051571259	30.131	0.15387	30.131	30.025	30.179	0					5	3	2	0	0	0	0.45317	1	11238	11238		47.657	3.5405	1	216370			15786	1466	9813	9860	16035	16035					-0.053289470125946536
HAVETVVNM	9	Unmodified	_HAVETVVNM_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2492980957031	2	500.250034	998.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.333	1	31.333	30.833	31.833	0								0	0	0	0.24724	1	11395	11395		44.117	0	1				15787	838	9814	9861	16036	16036					-0.013787628426030096
HAVGELQLQA	10	Unmodified	_HAVGELQLQA_					0	0	0			REV__ENSG00000185960|ENST00000686671|SHOX	REV__ENSG00000185960|ENST00000686671|SHOX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.29052734375	2	533.288005	1064.56146	3.3931	0.0018095	1.1006	0.00058693	4.4937	0.0023964	533.2884947831545	42.719	0.44746	42.719	42.535	42.983	0					32	13	4	0	0	0	0.39647	1	17077	17077		62.107	32.937	1	370780	+		15788	17059	9815	9862	16037	16037					0.03175957329199264
HAVGIVVNK	9	Unmodified	_HAVGIVVNK_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000469899.2_1_12:66431104-66431491:+|nuORF;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000397467.2_1_3:1947466-1947595:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7855529785156	2	468.784902	935.55525	0.38336	0.00017972	0.34106	0.00015989	0.72443	0.0003396	468.78519062899215	20.98	0.092684	20.98	20.904	20.997	0					4	2	2	0	0	0	0.032656	1	6592	6592		106.42	56.391	1	114830			15789	3248;9220	9816	9863	16038	16038					0.08489483888320137
HAVGPSTAM	9	Unmodified	_HAVGPSTAM_					0	0	0		TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;ENSG00000196628|ENST00000354452|TCF4	TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant	TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.7101745605469	2	435.710545	869.406537	-0.429	-0.00018692	-0.27409	-0.00011942	-0.70309	-0.00030634	435.7104373536704	22.619	0.40992	22.619	22.367	22.777	0					13	8	2	0	0	0	0.23186	1	7696	7696		57.811	17.239	1	146740			15790	7387	9817	9864	16039	16039					-0.03338990076883874
HAVGPSTAM	9	Unmodified	_HAVGPSTAM_					0	0	0		TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;ENSG00000196628|ENST00000354452|TCF4	TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant	TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.7101745605469	2	435.710545	869.406537	-0.63474	-0.00027656	0.1439	6.2699E-05	-0.49084	-0.00021386	435.71048853926214	22.506	0.41654	22.506	22.202	22.618	0					15	9	2	0	0	0	0.23186	1	6691	6691		57.811	4.4598	1	124090			15791	7387	9817	9864	16040	16040					-0.03338990076883874
HAVGPSTAM	9	Unmodified	_HAVGPSTAM_					0	0	0		TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;ENSG00000196628|ENST00000354452|TCF4	TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant	TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.7103576660156	2	435.710545	869.406537	0.77827	0.0003391	-1.3155	-0.00057318	-0.53722	-0.00023407	435.7100613605738	22.581	0.56873	22.581	22.27	22.839	0					28	11	3	0	0	0	0.11118	1	7522	7522		76.847	11.043	1	946510			15792	7387	9817	9864	16041	16041					-0.03338990076883874
HAVGPSTSL	9	Unmodified	_HAVGPSTSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.7294921875	2	434.729792	867.445031	3.2185	0.0013992	-3.6142	-0.0015712	-0.39571	-0.00017203	434.72819935495454	24.795	0.12919	24.795	24.763	24.892	0					7	4	2	0	0	0	0.51817	1	7637	7637		30.504	5.0535	1	42168			15793	4371	9818	9865	16042	16042					0.006006388292917109
HAVGPSTSL	9	Unmodified	_HAVGPSTSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.72955322265625	2	434.729792	867.445031	-0.44301	-0.00019259	-0.10497	-4.5633E-05	-0.54797	-0.00023822	434.72971443511676	25.016	0.46259	25.016	24.811	25.273	0					14	9	2	0	0	0	0.068692	1	8812	8812		88.643	14.668	1	351180			15794	4371	9818	9865	16043	16043					0.006006388292917109
HAVGPSTSL	9	Unmodified	_HAVGPSTSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.7295227050781	2	434.729792	867.445031	-0.57701	-0.00025084	-0.024708	-1.0741E-05	-0.60172	-0.00026159	434.7298616816501	24.869	0.50406	24.869	24.594	25.098	0					29	11	3	0	0	0	0.05357	1	7787	7787		94.006	28.203	1	746560			15795	4371	9818	9865	16044	16044					0.006006388292917109
HAVGPSTSL	9	Unmodified	_HAVGPSTSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.7295227050781	2	434.729792	867.445031	-0.52066	-0.00022634	0.0050034	2.1751E-06	-0.51565	-0.00022417	434.72978933776994	24.97	0.70424	24.97	24.676	25.381	0					39	14	4	0	0	0	0.043797	1	8627	8627		97.473	20.626	1	3476400			15796	4371	9818	9865	16045	16045					0.006006388292917109
HAVGPSTSL	9	Unmodified	_HAVGPSTSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.7296447753906	2	434.729792	867.445031	0.81797	0.00035559	-1.4241	-0.00061909	-0.60612	-0.0002635	434.72932340279226	25.003	1.0059	25.003	24.661	25.667	0					52	20	4	0	0	0	0.023949	1	8660	8660		115.46	36.008	1	7263300			15797	4371	9818	9865	16046	16046					0.006006388292917109
HAVVIHSDY	9	Unmodified	_HAVVIHSDY_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.G150Afs*25|1|0.19|ENSG00000275395|chr19:39927915-39927915|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7628784179688	2	520.761623	1039.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.878	1	22.878	22.378	23.378	0								0	0	0	0.13662	1	6538	6538		62.978	17.026	1				15798	11803	9819	9866	16047	16047					-0.009480007336151175
HAVVIHSDY	9	Unmodified	_HAVVIHSDY_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.G150Afs*25|1|0.19|ENSG00000275395|chr19:39927915-39927915|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7608032226562	2	520.761623	1039.50869	2.0876	0.0010872	-0.59223	-0.00030841	1.4954	0.00077875	520.7614494490193	23.201	0.14351	23.201	23.107	23.25	0					6	3	2	0	0	0	0.097811	1	7637	7637		79.939	18.967	1	239270			15799	11803	9819	9866	16048	16048					-0.009480007336151175
HAVVLLTHY	9	Unmodified	_HAVVLLTHY_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7984619140625	2	526.798009	1051.58147	0.95461	0.00050288	-0.27046	-0.00014248	0.68414	0.00036041	526.7978705373662	31.53	0.24714	31.53	31.438	31.685	0					9	5	2	0	0	0	0.018785	1	11907	11907		123.99	78.037	1	208240			15800	1641	9820	9867	16049	16049					0.05773753059816045
HAVVNLINY	9	Unmodified	_HAVVNLINY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2901611328125	2	521.787641	1041.56073	1.5078	0.00078673	0.22121	0.00011542	1.729	0.00090215	521.7876333490815	39.723	0.19587	39.723	39.644	39.84	0					16	11	2	0	0	0	0.43426	1	12875	12875		38.806	0	1	126070			15801	6049	9821	9868	16050	16050					0.04161162680134112
HAVVNLINY	9	Unmodified	_HAVVNLINY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2896728515625	2	521.787641	1041.56073	1.0705	0.00055858	-0.24694	-0.00012885	0.82357	0.00042973	521.7875002950937	40.029	0.29728	40.029	39.915	40.212	0					24	10	3	0	0	0	0.37197	1	15732	15732		44.117	6.9577	1	584730			15802	6049	9821	9868	16051	16051					0.04161162680134112
HAVVNLINY	9	Unmodified	_HAVVNLINY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7880249023438	2	521.787641	1041.56073	1.4638	0.00076379	0.16269	8.489E-05	1.6265	0.00084868	521.7875290567712	39.798	0.19454	39.798	39.697	39.892	0					13	10	2	0	0	0	0.45358	1	14161	14161		37.159	0	1	88884			15803	6049	9821	9868	16052	16052					0.04161162680134112
HAVVNLINY	9	Unmodified	_HAVVNLINY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7882690429688	2	521.787641	1041.56073	1.0579	0.000552	0.78932	0.00041185	1.8472	0.00096386	521.7879784231512	39.806	0.15599	39.806	39.728	39.884	0					17	8	3	0	0	0	0.25109	1	14166	14166		55.504	16.698	1	81547			15804	6049	9821	9868	16053	16053					0.04161162680134112
HAVVNLINY	9	Unmodified	_HAVVNLINY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7879638671875	2	521.787641	1041.56073	0.40469	0.00021116	0.47636	0.00024856	0.88105	0.00045972	521.7878203116248	39.979	0.36925	39.979	39.835	40.205	0					25	8	4	0	0	0	0.1236	1	15809	15809		73.975	26.059	1	3113100			15805	6049	9821	9868	16054	16054					0.04161162680134112
HAWVEFRA	8	Unmodified	_HAWVEFRA_					0	0	0			REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.76019287109375	2	508.259051	1014.50355	0.89754	0.00045618	-2.2008	-0.0011186	-1.3032	-0.00066239	508.2577832129434	41.426	0.17436	41.426	41.327	41.502	0					12	8	2	0	0	0	0.64096	1	15745	15745		42.474	5.3154	1	42514	+		15806	15075	9822	9869	16055	16055					-0.00312259805582471
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2597045898438	2	521.259248	1040.50394	1.4903	0.00077684	-0.88172	-0.0004596	0.60859	0.00031723	521.2588703489309	15.793	0.085263	15.793	15.735	15.82	0					5	3	2	0	0	0	0.19605	1	3503	3503		62.107	25.661	1	38632			15807	2347	9823	9870	16056	16056					-0.014688848763853457
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2594604492188	2	521.259248	1040.50394	1.514	0.00078919	-1.092	-0.00056919	0.42204	0.00021999	521.2587840168965	16.106	0.34904	16.106	15.937	16.286	0					13	8	3	0	0	0	0.012231	1	4291	4291		136.27	83.331	1	592790			15808	2347	9823	9870	16057	16057					-0.014688848763853457
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.84197998046875	3	347.841924	1040.50394	0.69227	0.0002408	-0.90056	-0.00031325	-0.20829	-7.2452E-05	347.8416828690459	16.11	0.3129	16.11	16.021	16.334	0					13	7	3	0	0	0	0.17854	1	4293	4293		101.25	55.28	1	321800			15809	2347	9823	9870	16058	16058					-0.014688848763853457
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.260498046875	2	521.259248	1040.50394	0.32724	0.00017058	1.4735	0.00076807	1.8007	0.00093864	521.2600694810214	15.789	0.090782	15.789	15.752	15.843	0					5	3	2	0	0	0	0.032052	1	3672	3672		107.01	57.471	1	102550			15810	2347	9823	9870	16059	16059					-0.014688848763853457
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2594604492188	2	521.259248	1040.50394	1.7333	0.0009035	-0.18711	-9.7531E-05	1.5462	0.00080596	521.259194295745	16.037	0.26761	16.037	15.962	16.23	0					12	5	3	0	0	0	0.01873	1	4513	4513		124.08	61.973	1	513010			15811	2347	9823	9870	16060	16060					-0.014688848763853457
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2599487304688	2	521.259248	1040.50394	1.0377	0.00054089	1.3655	0.00071179	2.4032	0.0012527	521.2599935302973	15.842	0.084204	15.842	15.814	15.898	0					5	3	2	0	0	0	0.21263	1	3640	3640		60.118	22.307	1	56904			15812	2347	9823	9870	16061	16061					-0.014688848763853457
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2601318359375	2	521.259248	1040.50394	1.6239	0.00084648	-0.019938	-1.0393E-05	1.604	0.00083609	521.2592566039408	16.039	0.26927	16.039	15.93	16.2	0					13	5	3	0	0	0	0.012231	1	4370	4370		136.27	82.917	1	966800			15813	2347	9823	9870	16062	16062					-0.014688848763853457
HAYEHSLGK	9	Unmodified	_HAYEHSLGK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.26025390625	2	521.259248	1040.50394	3.3832	0.0017635	-0.90225	-0.0004703	2.481	0.0012932	521.2587080615095	16.022	0.42012	16.022	15.913	16.333	0					12	8	2	0	0	0	0.12239	1	4367	4367		74.255	24.719	1	648890			15814	2347	9823	9870	16063	16063					-0.014688848763853457
HAYLSKNSL	9	Unmodified	_HAYLSKNSL_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.77685546875	2	516.777274	1031.53999	2.0318	0.00105	-2.4814	-0.0012823	-0.44959	-0.00023234	516.7762188722727	24.103	0.11908	24.103	24.036	24.155	0					5	3	2	0	0	0	0.42902	1	7063	7063		39.253	7.298	1	45250			15815	3710	9824	9871	16064	16064					0.02548572300474916
HAYLSKNSL	9	Unmodified	_HAYLSKNSL_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7774047851562	2	516.777274	1031.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.121	1	24.121	23.621	24.621	0								0	0	0	0.018211	1	7075	7075		101.6	48.664	1				15816	3710	9824	9871	16065	16065					0.02548572300474916
HAYLSKNSL	9	Unmodified	_HAYLSKNSL_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7772216796875	2	516.777274	1031.53999	1.7866	0.00092325	-1.4995	-0.0007749	0.28706	0.00014835	516.7764478634562	24.379	0.20027	24.379	24.277	24.478	0					9	4	3	0	0	0	0.010494	1	8209	8209		139.97	68.093	1	865650			15817	3710	9824	9871	16066	16066					0.02548572300474916
HAYLSKNSL	9	Unmodified	_HAYLSKNSL_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.77734375	2	516.777274	1031.53999	1.2668	0.00065468	0.6827	0.0003528	1.9495	0.0010075	516.7777080386253	24.557	0.39989	24.557	24.309	24.709	0					22	9	4	0	0	0	0.21263	1	8229	8229		60.118	23.672	1	880790			15818	3710	9824	9871	16067	16067					0.02548572300474916
HAYLSKNSL	9	Unmodified	_HAYLSKNSL_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.777587890625	2	516.777274	1031.53999	0.92556	0.00047831	-0.33658	-0.00017394	0.58898	0.00030437	516.7771687100402	24.369	0.36532	24.369	24.262	24.628	0					17	7	3	0	0	0	0.020674	1	8531	8531		120.87	60.574	1	676160			15819	3710	9824	9871	16068	16068					0.02548572300474916
HAYLSKNSL	9	Unmodified	_HAYLSKNSL_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7774658203125	2	516.777274	1031.53999	0.20399	0.00010542	-0.64594	-0.00033381	-0.44195	-0.00022839	516.7771201104201	24.333	0.21737	24.333	24.229	24.447	0					12	4	4	0	0	0	0.003936	2	8370	8346;8370		163.15	90.272	1	916650			15820	3710	9824	9871	16069;16070	16070					0.02548572300474916
HCCLCCSNSYF	11	Unmodified	_HCCLCCSNSYF_					0	0	0			REV__ENSG00000104341|ENST00000521545|LAPTM4B	REV__ENSG00000104341|ENST00000521545|LAPTM4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	640.22216796875	2	640.221779	1278.42901	0.71238	0.00045608	0.37284	0.0002387	1.0852	0.00069478	640.2218658647	49.709	0.95863	49.709	49.403	50.361	0					127	42	4	0	0	0	0.82978	1	17968	17968		8.6937	8.6937	1	549490	+		15821	13719	9825	9872	16071	16071					-0.19907218057437603
HCCSAGRKLW	10	Unmodified	_HCCSAGRKLW_					0	0	0		ENST00000413474.5_1_3:195711124-195712546:-|nuORF	ENST00000413474.5_1_3:195711124-195712546:-|nuORF	ENST00000413474.5_1_3:195711124-195712546:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.778564453125	2	580.776228	1159.5379	1.7396	0.0010103	1.2043	0.00069941	2.9439	0.0017098	580.7769067443869	44.156	1.0031	44.156	43.591	44.594	0					56	37	2	0	0	0	0.60076	1	17731	17731		34.173	0.65696	1	103890			15822	9335	9826	9873	16072	16072					-0.035485029806523016
HCDEENMGEHC	11	Unmodified	_HCDEENMGEHC_					0	0	0		ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	652.2111206054688	2	652.210454	1302.40636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.969	1	49.969	49.469	50.469	0								0	0	0	0.45674	1	19745	19745		12.207	3.0238	1				15823	3647	9827	9874	16073	16073					-0.23275145921320473
HCFLIWKKL	9	Unmodified	_HCFLIWKKL_					0	0	0			REV__chr20:34555794-34559208|211|15.49|0.68|4.52|+|0|TE_info:AluJr,AluJr_dup81442,Alu,SINE,donor,-,34555654,34555794|None,MAP1LC3A|1	REV__chr20:34555794-34559208|211|15.49|0.68|4.52|+|0|TE_info:AluJr,AluJr_dup81442,Alu,SINE,donor,-,34555654,34555794|None,MAP1LC3A|1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.5632629394531	3	396.563445	1186.66851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.057	1	13.057	12.557	13.557	0								0	0	0	0.27025	1	3089	3089		40.778	4.4605	1		+		15824	12483	9828	9875	16074	16074					0.08263836009859915
HCFSVFVKL	9	Unmodified	_HCFSVFVKL_					0	0	0			REV__RECK|p.K442Nfs*27|1|0.1|ENSG00000122707|chr9:36102116-36102116|A/-|frameshift_variant	REV__RECK|p.K442Nfs*27|1|0.1|ENSG00000122707|chr9:36102116-36102116|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2901000976562	2	540.288963	1078.56337	2.095	0.0011319	0.42909	0.00023183	2.5241	0.0013637	540.2891917372101	43.615	0.22581	43.615	43.521	43.746	0					13	6	3	0	0	0	0.099922	1	17439	17439		79.451	2.1334	1	288120	+		15825	21454	9829	9876	16075	16075					0.027232948134496837
HCLRGGGSLG	10	Unmodified	_HCLRGGGSLG_					0	0	0			REV__ENST00000433206.6_1_17:37076299-37076548:+|nuORF	REV__ENST00000433206.6_1_17:37076299-37076548:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.739990234375	2	478.740168	955.465783	-0.45291	-0.00021682	1.9961	0.0009556	1.5432	0.00073877	478.7412979871121	11.979	0.26177	11.979	11.722	11.984	0					20	8	3	0	0	0	0.72365	1	2493	2493		18.262	0.89712	1	357950	+		15826	19184	9830	9877	16076	16076					-0.013730940626714982
HCLVDPEALQ	10	Unmodified	_HCLVDPEALQ_					0	0	0		ENST00000299882.9_1_11:113576954-113577077:-|nuORF	ENST00000299882.9_1_11:113576954-113577077:-|nuORF	ENST00000299882.9_1_11:113576954-113577077:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.7758178710938	2	562.773874	1123.53319	1.2671	0.0007131	-0.21535	-0.00012119	1.0518	0.00059191	562.7738294521538	29.751	0.13036	29.751	29.686	29.817	0					11	6	2	0	0	0	0.54197	1	9406	9406		40.778	5.6261	1	90375			15827	8480	9831	9878	16077	16077					-0.023631086424074965
HCPEGTFQHR	10	Unmodified	_HCPEGTFQHR_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.51837158203125	3	404.517335	1210.53017	-0.11257	-4.5538E-05	1.4953	0.00060489	1.3828	0.00055935	404.5180786488584	18.652	0.11108	18.652	18.611	18.722	0					7	3	3	0	0	0	0.69544	1	4682	4682		22.58	1.5474	1	117580			15828	11713	9832	9879	16078	16078					-0.0666693897658206
HCRFHHPIN	9	Unmodified	_HCRFHHPIN_					0	0	0			REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF	REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.78125	2	580.780159	1159.54576	1.4948	0.00086815	-0.54415	-0.00031603	0.95065	0.00055212	580.7801030717592	19.199	0.097744	19.199	19.133	19.231	0					5	3	2	0	0	0	0.61124	1	4930	4930		12.207	0.69583	1	53157	+		15829	19578	9833	9880	16079	16079					-0.027626076688420653
HCSKAMIDAY	10	Unmodified	_HCSKAMIDAY_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1;REV__RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant	REV__nc|ENSG00000196218|P21817-2|RYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.754638671875	2	569.754627	1137.4947	0.86024	0.00049013	-0.89703	-0.00051109	-0.036786	-2.0959E-05	569.7540750069284	20.938	0.26481	20.938	20.83	21.095	0					9	5	3	0	0	0	0.17732	1	6877	6877		82.241	9.3613	1	201430	+		15830	17234;17412	9834	9881	16080	16080					-0.06854737548587764
HCWVHMLDN	9	Unmodified	_HCWVHMLDN_					0	0	0		SLC22A10|p.R48H|1|0.31|ENSG00000184999|chr11:63290308-63290308|G/A|missense_variant	SLC22A10|p.R48H|1|0.31|ENSG00000184999|chr11:63290308-63290308|G/A|missense_variant	SLC22A10|p.R48H|1|0.31|ENSG00000184999|chr11:63290308-63290308|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.7482299804688	2	577.747136	1153.47972	-0.11698	-6.7585E-05	3.3704	0.0019473	3.2534	0.0018797	577.7474848737739	15.156	0.069242	15.156	15.109	15.178	0					7	3	3	0	0	0	0.61124	1	3395	3395		17.365	4.4058	1	82023			15831	22405	9835	9882	16081	16081					-0.09088184625898066
HDAEIVRL	8	Unmodified	_HDAEIVRL_					0	0	0		nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-4|PRC1	nc|ENSG00000198901|O43663-4|PRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.76458740234375	2	476.764166	951.513779	0.58019	0.00027661	-0.26283	-0.00012531	0.31736	0.0001513	476.7640519146743	29.165	0.13913	29.165	29.057	29.196	0					6	3	2	0	0	0	0.39125	1	10370	10370		71.877	27.761	1	57718			15832	7637	9836	9883	16082	16082					0.03608303129010437
HDCGMYRGF	9	Unmodified	_HDCGMYRGF_					0	0	0		sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2	sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2	sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2168579101562	2	543.218211	1084.42187	1.1507	0.00062509	-0.9859	-0.00053556	0.16482	8.9531E-05	543.2175038425778	37.018	0.27036	37.018	36.839	37.109	0					13	8	2	0	0	0	0.45358	1	14431	14431		37.159	3.6435	1	71752			15833	22478	9837	9884	16083	16083					-0.11696446551331974
HDCKKHKGI	9	Unmodified	_HDCKKHKGI_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2874755859375	2	533.284743	1064.55493	0.13977	7.4535E-05	4.4487	0.0023724	4.5885	0.002447	533.2868560596685	28.076	0.20916	28.076	27.912	28.121	0					13	5	4	0	0	0	0.2873	1	9890	9890		51.335	1.8939	1	275370	+		15834	13165	9838	9885	16084	16084					0.025237408968223463
HDCTFIESPD	10	Unmodified	_HDCTFIESPD_					0	0	0			REV__CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	REV__CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.239501953125	2	582.237321	1162.46009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.601	1	14.601	14.101	15.101	0								0	0	0	0.4201	1	3824	3824		15.642	0.3087	1		+		15835	12521	9839	9886	16085	16085					-0.11464282155702676
HDEAGVGIYTH	11	Unmodified	_HDEAGVGIYTH_					0	0	0			REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF	REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	599.7769165039062	2	599.778002	1197.54145	0.37553	0.00022523	-2.9655	-0.0017787	-2.59	-0.0015534	599.7761368741261	18.495	0.11384	18.495	18.415	18.529	0					5	3	2	0	0	0	0.3224	1	4847	4847		60.118	1.872	1	96772	+		15836	18916	9840	9887	16086	16086					-0.04941838401418863
HDEAGVGIYTH	11	Unmodified	_HDEAGVGIYTH_					0	0	0			REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF	REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	599.77587890625	2	599.778002	1197.54145	0.47376	0.00028415	-3.5909	-0.0021538	-3.1172	-0.0018696	599.7755746729172	18.479	0.11206	18.479	18.439	18.551	0					6	3	2	0	0	0	0.30464	1	4841	4841		62.107	1.9892	1	102480	+		15837	18916	9840	9887	16087	16087					-0.04941838401418863
HDEFCKSY	8	Unmodified	_HDEFCKSY_					0	0	0			REV__ENSG00000186788|ENST00000445385|SPATA31D3	REV__ENSG00000186788|ENST00000445385|SPATA31D3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.711181640625	2	514.710742	1027.40693	0.12531	6.4499E-05	0.38137	0.00019629	0.50668	0.00026079	514.7109577309207	29.153	0.20811	29.153	29.061	29.269	0					15	7	3	0	0	0	0.49887	1	9152	9152		60.294	4.7898	1	145520	+		15838	17090	9841	9888	16088	16088					-0.10567615147692777
HDELEAPSMKT	11	Oxidation (M)	_HDELEAPSM(Oxidation (M))KT_		HDELEAPSM(1)KT		HDELEAPSM(82)KT	0	0	1		nc|ENSG00000189068|Q6UX27-3|VSTM1;nc|ENSG00000189068|Q6UX27-2|VSTM1;ENSG00000189068|ENST00000338372|VSTM1	nc|ENSG00000189068|Q6UX27-3|VSTM1	nc|ENSG00000189068|Q6UX27-3|VSTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	637.2919311523438	2	637.290085	1272.56562	1.6851	0.0010739	1.4467	0.00092194	3.1318	0.0019959	637.2910418087978	14.412	0.19056	14.412	14.362	14.553	0					8	4	3	0	0	0	0.13369	1	3745	3745		82.241	12.613	1	537520			15839	7300	9842	9889	16089	16089		293			-0.05976366030108693
HDEPLPSPAE	10	Unmodified	_HDEPLPSPAE_					0	0	0			REV__ENST00000488383.5_1_6:30614935-30617552:+|nuORF	REV__ENST00000488383.5_1_6:30614935-30617552:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7544555664062	2	546.253828	1090.4931	0.48588	0.00026541	0.35343	0.00019306	0.83931	0.00045847	546.2541557384683	34.983	0.18967	34.983	34.827	35.017	0					12	8	2	0	0	0	0.55603	1	11809	11809		39.253	0	1	76758	+		15840	19691	9843	9890	16090	16090					-0.048523320413323745
HDEQLELPSC	10	Unmodified	_HDEQLELPSC_					0	0	0			REV__PEF1|p.P42Lfs*95|1|0.12|ENSG00000162517|chr1:31635422-31635422|G/-|frameshift_variant	REV__PEF1|p.P42Lfs*95|1|0.12|ENSG00000162517|chr1:31635422-31635422|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	586.2628173828125	2	585.75842	1169.50229	1.5104	0.00088471	2.5349	0.0014849	4.0453	0.0023696	585.7599767805431	14.782	0.24477	14.782	14.719	14.964	0					29	11	3	0	0	0	0.26198	1	3093	3093		71.877	15.444	1	580400	+		15841	21357	9844	9891	16091	16091					-0.07568306747293718
HDEQLELPSC	10	Unmodified	_HDEQLELPSC_					0	0	0			REV__PEF1|p.P42Lfs*95|1|0.12|ENSG00000162517|chr1:31635422-31635422|G/-|frameshift_variant	REV__PEF1|p.P42Lfs*95|1|0.12|ENSG00000162517|chr1:31635422-31635422|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.7617797851562	2	585.75842	1169.50229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.063	1	15.063	14.563	15.563	0								0	0	0	0.19992	1	3810	3810		64.207	3.2353	1		+		15842	21357	9844	9891	16092	16092					-0.07568306747293718
HDEQLELPSC	10	Unmodified	_HDEQLELPSC_					0	0	0			REV__PEF1|p.P42Lfs*95|1|0.12|ENSG00000162517|chr1:31635422-31635422|G/-|frameshift_variant	REV__PEF1|p.P42Lfs*95|1|0.12|ENSG00000162517|chr1:31635422-31635422|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.7605590820312	2	585.75842	1169.50229	3.6594	0.0021435	0.095459	5.5916E-05	3.7548	0.0021994	585.7585228359658	14.787	0.20519	14.787	14.734	14.939	0					23	9	4	0	0	0	0.24256	1	3250	3250		74.255	19.479	1	689690	+		15843	21357	9844	9891	16093	16093					-0.07568306747293718
HDERQDSIN	9	Unmodified	_HDERQDSIN_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.25	2	557.249609	1112.48466	1.806	0.0010064	-1.191	-0.0006637	0.61496	0.00034268	557.2489552497177	14.87	0.17316	14.87	14.82	14.994	0					9	4	3	0	0	0	0.24095	1	3729	3729		56.721	3.7844	1	377490			15844	5040	9845	9892	16094	16094					-0.06707885957939652
HDERQDSIN	9	Unmodified	_HDERQDSIN_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2498779296875	2	557.249609	1112.48466	0.57465	0.00032022	0.38075	0.00021217	0.9554	0.0005324	557.2496614192489	14.854	0.21382	14.854	14.797	15.011	0					6	4	2	0	0	0	0.16002	1	3953	3953		66.429	13.078	1	449430			15845	5040	9845	9892	16095	16095					-0.06707885957939652
HDERQDSIN	9	Unmodified	_HDERQDSIN_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2498779296875	2	557.249609	1112.48466	1.2254	0.00068288	-0.36249	-0.000202	0.86294	0.00048088	557.2493301856956	14.868	0.16625	14.868	14.761	14.928	0					9	3	3	0	0	0	0.16002	1	3785	3785		66.429	9.7082	1	261870			15846	5040	9845	9892	16096	16096					-0.06707885957939652
HDEWDNTLSK	10	Unmodified	_HDEWDNTLSK_					0	0	0			REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF;REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	622.779541015625	2	622.780741	1243.54693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.039	1	15.039	14.539	15.539	0								0	0	0	0.3805	1	3296	3296		36.447	3.6343	1		+		15847	13298;13478	9846	9893	16097	16097					-0.06510159609615584
HDFQALALES	10	Unmodified	_HDFQALALES_					0	0	0		ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;ENST00000420234.5_1_2:20508312-20527121:-|nuORF	ENSG00000055917|ENST00000361078|PUM2	ENSG00000055917|ENST00000361078|PUM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.7777099609375	2	565.77747	1129.54039	0.77044	0.00043589	-0.2646	-0.00014971	0.50583	0.00028619	565.7773339929254	22.179	0.3134	22.179	22.07	22.384	0					15	6	3	0	0	0	0.59277	1	7478	7478		35.152	2.3396	1	497370			15848	1283	9847	9894	16098	16098					-0.019200527703333137
HDGDIHAFRM	10	Unmodified	_HDGDIHAFRM_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	599.7759399414062	2	599.774739	1197.53493	1.553	0.00093147	-0.28454	-0.00017066	1.2685	0.00076081	599.7748044442238	18.431	0.1067	18.431	18.376	18.483	0					9	4	3	0	0	0	0.39566	1	4582	4582		56.721	3.7844	1	219410	+		15849	13905	9848	9895	16099	16099					-0.05594054833818518
HDGDIHAFRM	10	Unmodified	_HDGDIHAFRM_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	599.776123046875	2	599.774739	1197.53493	2.0515	0.0012305	0.41918	0.00025142	2.4707	0.0014819	599.775021261765	18.661	0.1636	18.661	18.555	18.719	0					9	3	3	0	0	0	0.41335	1	5640	5640		54.776	1.8396	1	1327100	+		15850	13905	9848	9895	16100	16100					-0.05594054833818518
HDGFRPLS	8	Unmodified	_HDGFRPLS_					0	0	0			REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7337341308594	2	464.735409	927.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.539	1	41.539	41.039	42.039	0								0	0	0	1.7419	1	14631	14631		31.955	2.8053	1		+		15851	12846	9849	9896	16101	16101					-0.010365390765628035
HDGLHVASL	9	Unmodified	_HDGLHVASL_					0	0	0		ENSG00000109046|ENST00000262394|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1	ENSG00000109046|ENST00000262394|WSB1	ENSG00000109046|ENST00000262394|WSB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7486877441406	2	474.748516	947.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.195	1	29.195	28.695	29.695	0								0	0	0	0.1219	1	10400	10400		66.429	0.6261	1				15852	2561	9850	9897	16102	16102					0.00663730094913717
HDGLHVASL	9	Unmodified	_HDGLHVASL_					0	0	0		ENSG00000109046|ENST00000262394|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1	ENSG00000109046|ENST00000262394|WSB1	ENSG00000109046|ENST00000262394|WSB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.747802734375	2	474.748516	947.482479	-0.12045	-5.7183E-05	-1.8209	-0.00086446	-1.9413	-0.00092164	474.74811371058047	29.171	0.62145	29.171	28.728	29.35	0					20	13	2	0	0	0	0.1115	1	10760	10760		76.774	5.4784	1	393170			15853	2561	9850	9897	16103	16103					0.00663730094913717
HDILHSQGY	9	Unmodified	_HDILHSQGY_					0	0	0		ENST00000507421.1_1_5:75003529-75003685:-|nuORF	ENST00000507421.1_1_5:75003529-75003685:-|nuORF	ENST00000507421.1_1_5:75003529-75003685:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.25927734375	2	535.256705	1068.49886	0.29105	0.00015579	1.5229	0.00081517	1.814	0.00097095	535.2574405085218	37.795	0.32576	37.795	37.549	37.874	0					17	10	2	0	0	0	0.40353	1	14743	14743		42.396	13.247	1	125340			15854	10201	9851	9898	16104	16104					-0.032651887390102274
HDLAYVAAL	9	Unmodified	_HDLAYVAAL_					0	0	0			REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7613525390625	2	486.761092	971.507631	-0.54655	-0.00026604	1.0499	0.00051106	0.50337	0.00024502	486.7616529917549	46.57	0.20131	46.57	46.452	46.653	0					15	9	2	0	0	0	0.32741	1	18613	18613		47.916	5.5195	1	86121	+		15855	13375	9852	9899	16105	16105					0.02073784897470432
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.7798156738281	2	462.779285	923.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.229	1	31.229	30.729	31.729	0								0	0	0	1.7419	1	10022	10022		90.37	37.018	1				15856	2006	9853	9900	16106	16106					0.0791866179419003
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.7792663574219	2	462.779285	923.544017	0.11222	5.1934E-05	-0.24016	-0.00011114	-0.12794	-5.9207E-05	462.7791993214795	31.237	0.3114	31.237	31.121	31.432	0					25	12	3	0	0	0	0.22502	1	10009	10009		131.03	51.58	1	305390			15857	2006	9853	9900	16107	16107					0.0791866179419003
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7790222167969	2	462.779285	923.544017	0.069126	3.199E-05	-0.51879	-0.00024009	-0.44967	-0.0002081	462.7790580541962	31.509	0.42556	31.509	31.385	31.811	0					17	10	3	0	0	0	0.18319	1	11469	11469		152.47	58.464	1	544930			15858	2006	9853	9900	16108	16108					0.0791866179419003
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7789611816406	2	462.779285	923.544017	-0.14544	-6.7307E-05	-0.47068	-0.00021782	-0.61612	-0.00028513	462.77903572887146	31.492	0.52945	31.492	31.348	31.878	0					26	11	4	0	0	0	0.11778	1	11867	11867		157.33	75.024	1	1414700			15859	2006	9853	9900	16109	16109					0.0791866179419003
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.28131103515625	2	462.779285	923.544017	-0.13933	-6.448E-05	0.0858	3.9706E-05	-0.053532	-2.4773E-05	462.7793247283419	31.28	0.32743	31.28	31.175	31.503	0					16	8	3	0	0	0	0.2498	1	10728	10728		101.6	43.789	1	322100			15860	2006	9853	9900	16110	16110					0.0791866179419003
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7793273925781	2	462.779285	923.544017	-0.29447	-0.00013628	-0.71484	-0.00033081	-1.0093	-0.00046709	462.77902290692043	31.274	0.20376	31.274	31.199	31.403	0					11	5	3	0	0	0	0.41	1	10740	10740		69.628	20.186	1	134500			15861	2006	9853	9900	16111	16111					0.0791866179419003
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.77886962890625	2	462.779285	923.544017	-0.47269	-0.00021875	-0.22794	-0.00010548	-0.70063	-0.00032424	462.77922749138486	31.479	0.56609	31.479	31.319	31.885	0					29	11	4	0	0	0	0.27242	1	11758	11758		143.89	58.527	1	2378400			15862	2006	9853	9900	16112	16112					0.0791866179419003
HDLVIKSL	8	Unmodified	_HDLVIKSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7789611816406	2	462.779285	923.544017	0.78024	0.00036108	-2.0693	-0.00095761	-1.289	-0.00059653	462.7786855704924	31.462	0.56097	31.462	31.207	31.768	0					23	11	3	0	0	0	0.22502	1	11774	11774		131.03	57.057	1	1408400			15863	2006	9853	9900	16113	16113					0.0791866179419003
HDNWILVLL	9	Unmodified	_HDNWILVLL_					0	0	0			REV__ENSG00000183251|ENST00000380224|OR51B4	REV__ENSG00000183251|ENST00000380224|OR51B4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.8184204101562	2	561.818941	1121.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.967	1	35.967	35.467	36.467	0								0	0	0	0.3245	1	13935	13935		23.042	11.531	1		+		15864	16922	9854	9901	16114	16114					0.06738308748322197
HDPLKEPEK	9	Unmodified	_HDPLKEPEK_					0	0	0			REV__ENSG00000150873|ENST00000381585|C2orf50	REV__ENSG00000150873|ENST00000381585|C2orf50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7879638671875	2	546.787838	1091.56112	1.1326	0.00061931	-0.45681	-0.00024978	0.67582	0.00036953	546.7873959873635	32.229	0.25765	32.229	32.108	32.366	0					12	7	2	0	0	0	0.46194	1	11164	11164		29.15	3.5755	1	77748	+		15865	15457	9855	9902	16115	16115					0.01900537609321873
HDQDTLRRLKR	11	Unmodified	_HDQDTLRRLKR_					0	0	0			REV__ENST00000262094.9_1_18:52495892-52544833:+|nuORF	REV__ENST00000262094.9_1_18:52495892-52544833:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	719.4047241210938	2	719.405298	1436.79604	1.4098	0.0010142	-2.063	-0.0014841	-0.65315	-0.00046988	719.4033821632665	31.536	0.26711	31.536	31.361	31.628	0					15	10	2	0	0	0	0.81601	1	10436	10436		11.636	3.4008	1	78468	+		15866	18025	9856	9903	16116	16116					0.0951164813759533
HDQTQGQTQQ	10	Unmodified	_HDQTQGQTQQ_					0	0	0			REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.76171875	2	585.76034	1169.50613	0.82606	0.00048388	-0.035787	-2.0963E-05	0.79028	0.00046291	585.7604446330482	14.823	0.2427	14.823	14.764	15.007	0					30	12	4	0	0	0	0.19797	1	3210	3210		79.713	8.4169	1	618200	+		15867	20859	9857	9904	16117	16117					-0.07184500929247406
HDQTQGQTQQ	10	Unmodified	_HDQTQGQTQQ_					0	0	0			REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.7605590820312	2	585.76034	1169.50613	0.10997	6.4413E-05	0.067459	3.9515E-05	0.17742	0.00010393	585.760384232352	15.021	0.51875	15.021	14.911	15.429	0					24	10	4	0	0	0	0.19797	1	3854	3854		79.713	13.283	1	4887200	+		15868	20859	9857	9904	16118	16118					-0.07184500929247406
HDVNLGRAV	9	Unmodified	_HDVNLGRAV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7673034667969	2	490.76724	979.519927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.427	1	23.427	22.927	23.927	0								0	0	0	0.21054	1	7037	7037		49.442	0.23076	1				15869	6476	9858	9905	16119	16119					0.029348213605089768
HDVNLGRAV	9	Unmodified	_HDVNLGRAV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7668762207031	2	490.76724	979.519927	-0.066638	-3.2704E-05	-0.12684	-6.2251E-05	-0.19348	-9.4954E-05	490.76698921606095	23.62	0.16588	23.62	23.513	23.679	0					6	3	2	0	0	0	0.034359	1	8154	8154		104.75	40.539	1	255260			15870	6476	9858	9905	16120	16120					0.029348213605089768
HDVNLGRAV	9	Unmodified	_HDVNLGRAV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7670593261719	2	490.76724	979.519927	-0.55118	-0.0002705	0.22064	0.00010828	-0.33054	-0.00016222	490.76728132298484	23.593	0.16576	23.593	23.484	23.65	0					8	3	3	0	0	0	0.055856	1	8032	8032		93.195	24.409	1	626060			15871	6476	9858	9905	16121	16121					0.029348213605089768
HDVVVENNL	9	Unmodified	_HDVVVENNL_					0	0	0		ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7650146484375	2	519.764363	1037.51417	1.6489	0.00085703	-0.36858	-0.00019157	1.2803	0.00066546	519.764054672045	30	0.15883	30	29.9	30.059	0					6	3	2	0	0	0	0.21263	1	11180	11180		60.118	7.1816	1	711050			15872	5626	9859	9906	16122	16122					-0.0030832194181584782
HDVVVENNL	9	Unmodified	_HDVVVENNL_					0	0	0		ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7648315429688	2	519.764363	1037.51417	1.6149	0.00083936	-0.72403	-0.00037632	0.89085	0.00046303	519.764090334366	29.939	0.16699	29.939	29.83	29.997	0					9	3	3	0	0	0	0.095583	1	11037	11037		80.455	24.95	1	554470			15873	5626	9859	9906	16123	16123					-0.0030832194181584782
HDYCFHCK	8	2 Carbamidomethyl (C)	_HDYC(Carbamidomethyl (C))FHC(Carbamidomethyl (C))K_	HDYC(1)FHC(1)K		HDYC(41)FHC(41)K		0	2	0		nc|ENSG00000022267|Q13642-1|FHL1;ENSG00000022267|ENST00000370683|FHL1;nc|ENSG00000022267|Q13642-4|FHL1	nc|ENSG00000022267|Q13642-1|FHL1	nc|ENSG00000022267|Q13642-1|FHL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.7274780273438	2	583.728943	1165.44333	0.013818	8.0662E-06	-2.4482	-0.0014291	-2.4344	-0.001421	583.7278785141193	33.917	0.19852	33.917	33.8	33.998	0					11	5	3	0	0	0	0.65276	1	12561	12561		40.573	6.651	1	219210			15874	1109	9860	9907	16124	16124	36;37				-0.13277061522626354
HDYRCRTGY	9	Unmodified	_HDYRCRTGY_					0	0	0			REV__ENSG00000075975|ENST00000170447|MKRN2	REV__ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.76025390625	2	585.759089	1169.50363	1.5001	0.00087869	0.54571	0.00031965	2.0458	0.0011983	585.759383187242	15.003	0.52004	15.003	14.894	15.414	0					19	10	4	0	0	0	0.25109	1	3870	3870		55.504	55.504	1	5157500	+		15875	13244	9861	9908	16125	16125					-0.07434627867883137
HEAAARIQL	9	Unmodified	_HEAAARIQL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;ENST00000561268.5_1_15:44859616-44864898:-|nuORF	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7834777832031	2	504.78289	1007.55123	0.65634	0.00033131	0.21298	0.00010751	0.86932	0.00043882	504.78302752972525	25.751	0.18192	25.751	25.636	25.818	0					8	3	3	0	0	0	0.10915	1	8835	8835		77.318	25.982	1	119830			15876	2268	9862	9909	16126	16126					0.047753943946077015
HEAATKAVL	9	Unmodified	_HEAATKAVL_					0	0	0		DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant;ENST00000556502.1_1_14:60619584-60632027:-|nuORF;ENSG00000100612|ENST00000557185|DHRS7;nc|ENSG00000100612|Q9Y394-2|DHRS7	DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant	DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.26666259765625	2	470.266542	938.51853	0.87534	0.00041164	-0.52441	-0.00024661	0.35093	0.00016503	470.2662518732534	19.358	0.12535	19.358	19.268	19.393	0					6	3	2	0	0	0	0.010494	1	4985	4985		139.97	71.486	1	119160			15877	780	9863	9910	16127	16127					0.04681187271739873
HEAATKAVL	9	Unmodified	_HEAATKAVL_					0	0	0		DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant;ENST00000556502.1_1_14:60619584-60632027:-|nuORF;ENSG00000100612|ENST00000557185|DHRS7;nc|ENSG00000100612|Q9Y394-2|DHRS7	DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant	DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2667236328125	2	470.266542	938.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.383	1	19.383	18.883	19.883	0								0	0	0	0.14033	1	5239	5239		62.107	10.772	1				15878	780	9863	9910	16128	16128					0.04681187271739873
HEADKTYML	9	Unmodified	_HEADKTYML_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2615966796875	2	554.260599	1106.50665	3.0203	0.001674	-1.5216	-0.00084337	1.4987	0.00083066	554.2599184857748	27.136	0.21352	27.136	27.054	27.267	0					20	8	4	0	0	0	0.085655	1	8313	8313		82.75	23.969	1	207820			15879	4527	9864	9911	16129	16129					-0.04234797533740675
HEADKTYML	9	Unmodified	_HEADKTYML_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2623901367188	2	554.260599	1106.50665	1.7157	0.00095096	-1.0536	-0.00058397	0.66212	0.00036699	554.2601439875369	27.398	0.59691	27.398	27.265	27.862	0					36	14	5	0	0	0	0.037924	1	9537	9537		101.25	49.917	1	1301400			15880	4527	9864	9911	16130	16130					-0.04234797533740675
HEADKTYML	9	Unmodified	_HEADKTYML_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.2608032226562	2	554.260599	1106.50665	4.5202	0.0025053	-2.9005	-0.0016076	1.6197	0.00089771	554.2585558273003	27.157	0.23773	27.157	27.024	27.262	0					10	8	2	0	0	0	0.078509	1	8611	8611		85.161	37.503	1	54698			15881	4527	9864	9911	16131	16131					-0.04234797533740675
HEADKTYML	9	Unmodified	_HEADKTYML_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.261474609375	2	554.260599	1106.50665	0.50903	0.00028214	0.32646	0.00018094	0.83549	0.00046308	554.2607488662203	27.381	0.36335	27.381	27.27	27.634	0					18	7	3	0	0	0	0.010494	1	9902	9902		139.97	68.675	1	619980			15882	4527	9864	9911	16132	16132					-0.04234797533740675
HEADKTYML	9	Oxidation (M)	_HEADKTYM(Oxidation (M))L_		HEADKTYM(1)L		HEADKTYM(70)L	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7593994140625	2	562.258056	1122.50156	1.6284	0.00091555	-0.55678	-0.00031305	1.0716	0.0006025	562.2578727679942	23.424	0.49467	23.424	23.324	23.819	0					20	11	3	0	0	0	0.1424	1	7744	7744		69.628	25.25	1	135760			15883	4527	9864	9912	16133	16133		187			-0.054791013963722435
HEADKTYML	9	Oxidation (M)	_HEADKTYM(Oxidation (M))L_		HEADKTYM(1)L		HEADKTYM(99)L	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.258056640625	2	562.258056	1122.50156	0.69158	0.00038885	-0.65783	-0.00036987	0.033757	1.898E-05	562.2579069995987	23.464	0.41629	23.464	23.263	23.679	0					18	8	3	0	0	0	0.0406	1	8082	8082		98.629	24.374	1	231710			15884	4527	9864	9912	16134	16134		187			-0.054791013963722435
HEAEGHIVT	9	Unmodified	_HEAEGHIVT_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7433776855469	2	496.743431	991.472308	-0.032314	-1.6052E-05	-0.57084	-0.00028356	-0.60315	-0.00029961	496.74314241036865	17.962	0.16824	17.962	17.853	18.022	0					6	3	2	0	0	0	0.062676	1	5420	5420		90.777	31.995	1	343820			15885	1964	9865	9913	16135	16135					-0.023768776303313643
HEAEGHIVT	9	Unmodified	_HEAEGHIVT_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7435302734375	2	496.743431	991.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.784	1	17.784	17.284	18.284	0								0	0	0	0.38123	1	4507	4507		16.473	0.83134	1				15886	1964	9865	9913	16136	16136					-0.023768776303313643
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.248291015625	2	548.248023	1094.48149	1.6344	0.00089608	-0.71939	-0.0003944	0.91505	0.00050168	548.2477926681312	20.733	0.43887	20.733	20.669	21.108	0					29	14	3	0	0	0	0.17732	1	5597	5597		82.241	39.844	1	722240			15887	1964	9866	9914	16137	16137					-0.06196852336302072
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2481079101562	2	548.248023	1094.48149	1.8476	0.001013	-1.2143	-0.00066572	0.63337	0.00034724	548.2474215569172	21.056	0.86765	21.056	20.97	21.837	0					54	20	5	0	0	0	0.0062614	1	6628	6628		161.9	103.67	1	5446200			15888	1964	9866	9914	16138	16138					-0.06196852336302072
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2484130859375	2	548.248023	1094.48149	0.63925	0.00035047	-0.08395	-4.6026E-05	0.5553	0.00030444	548.2481210042189	20.988	0.96165	20.988	20.88	21.842	0					45	19	5	0	0	0	0.010762	1	6875	6875		139.97	81.741	1	3194300			15889	1964	9866	9914	16139	16139					-0.06196852336302072
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2481689453125	2	548.248023	1094.48149	1.7823	0.00097714	-1.5566	-0.00085341	0.22569	0.00012373	548.2472267898456	20.972	0.46082	20.972	20.863	21.324	0					20	9	5	0	0	0	0.019118	1	6895	6895		125.81	69.093	1	1658900			15890	1964	9866	9914	16140	16140					-0.06196852336302072
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.248291015625	2	548.248023	1094.48149	1.9199	0.0010526	-0.91911	-0.0005039	1.0008	0.00054871	548.2474544819471	20.85	0.34458	20.85	20.751	21.095	0					18	8	3	0	0	0	0.013145	1	5950	5950		131.03	45.871	1	380240			15891	1964	9866	9914	16141	16141					-0.06196852336302072
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2482299804688	2	548.248023	1094.48149	1.1559	0.00063372	-0.50222	-0.00027534	0.65368	0.00035838	548.2478484800823	20.834	0.33977	20.834	20.78	21.12	0					19	8	3	0	0	0	0.21754	1	5943	5943		77.318	38.511	1	582460			15892	1964	9866	9914	16142	16142					-0.06196852336302072
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2484741210938	2	548.248023	1094.48149	0.51767	0.00028381	0.055947	3.0673E-05	0.57362	0.00031449	548.2482560295406	21	1.0116	21	20.844	21.856	0					48	20	6	0	0	0	0.0071942	2	6752	6752;6873		157.33	80.011	1	4608600			15893	1964	9866	9914	16143;16144	16143					-0.06196852336302072
HEAEGHIVTC	10	Unmodified	_HEAEGHIVTC_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2481079101562	2	548.248023	1094.48149	1.8643	0.0010221	-1.6997	-0.00093185	0.16464	9.0265E-05	548.2473037389265	20.984	0.91447	20.984	20.875	21.789	0					40	18	5	0	0	0	0.012138	1	6748	6748		134.81	55.36	1	4939000			15894	1964	9866	9914	16145	16145					-0.06196852336302072
HEAEINKL	8	Unmodified	_HEAEINKL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;GCC2|p.L712Cfs*16|1|0.49|ENSG00000135968|chr2:108471458-108471458|T/-|frameshift_variant;GCC2|p.E275K|1|0.35|ENSG00000135968|chr2:108470152-108470152|G/A|missense_variant	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.256591796875	2	477.256174	952.497795	0.55476	0.00026476	0.067711	3.2316E-05	0.62247	0.00029708	477.2561705711322	21.673	0.14174	21.673	21.624	21.766	0					8	3	3	0	0	0	0.27635	1	6934	6934		90.37	23.941	1	137250			15895	4042	9867	9915	16146	16146					0.019645968920940504
HEAELMRK	8	Unmodified	_HEAELMRK_					0	0	0		CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant;nc|ENSG00000107736|Q9H251-6|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.26226806640625	2	507.263476	1012.5124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.13	1	25.13	24.63	25.63	0								0	0	0	1.7419	1	7944	7944		63.306	0.32785	1				15896	452	9868	9916	16147	16147					0.00664345768586827
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2815551757812	2	526.28018	1050.54581	2.2859	0.001203	0.061881	3.2567E-05	2.3477	0.0012356	526.2802537945457	21.427	0.17422	21.427	21.326	21.5	0					16	6	3	0	0	0	0.037924	1	5897	5897		101.25	44.532	1	332860			15897	6658	9869	9917	16148	16148					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2805786132812	2	526.28018	1050.54581	2.0257	0.0010661	-1.4115	-0.00074283	0.61423	0.00032326	526.2793127027675	21.758	0.572	21.758	21.665	22.237	0					23	13	4	0	0	0	0.00073892	1	6954	6954		185.55	80.803	1	3112300			15898	6658	9869	9917	16149	16149					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2803955078125	2	526.28018	1050.54581	0.96392	0.00050729	-0.67402	-0.00035472	0.2899	0.00015257	526.2798136013806	21.634	0.41566	21.634	21.475	21.89	0					23	8	5	0	0	0	0.0049871	1	7213	7213		158.07	67.705	1	3452800			15899	6658	9869	9917	16150	16150					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2808837890625	2	526.28018	1050.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.53	1	21.53	21.03	22.03	0								0	0	0	0.080575	1	6258	6258		77.318	16.346	1				15900	6658	9869	9917	16151	16151					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2803344726562	2	526.28018	1050.54581	0.61014	0.0003211	-0.38531	-0.00020278	0.22483	0.00011832	526.2798376902795	21.645	0.41819	21.645	21.437	21.856	0					19	8	4	0	0	0	0.035062	1	7089	7089		104.06	32.179	1	2029200			15901	6658	9869	9917	16152	16152					0.022556708121328484
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7772827148438	2	526.777805	1051.54106	1.3074	0.00068869	-0.62784	-0.00033073	0.67951	0.00035795	526.7774600488832	23.11	0.34968	23.11	23.033	23.383	0					28	10	4	0	0	0	0.078509	1	6623	6623		85.161	35.719	1	1793500			15902	5044;7071	9870	9918	16153	16153					0.0173478666936262
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7781372070312	2	526.777805	1051.54106	2.0526	0.0010813	-1.5673	-0.0008256	0.48535	0.00025567	526.7768411407741	23.447	0.84129	23.447	23.222	24.063	0					54	19	8	0	0	0	0.070005	1	7755	7755		88.177	38.966	1	11707000			15903	5044;7071	9870	9918	16154	16154					0.0173478666936262
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7781982421875	2	526.777805	1051.54106	0.95246	0.00050174	-0.67553	-0.00035586	0.27693	0.00014588	526.7773857941692	23.37	0.86731	23.37	23.263	24.13	0					35	17	6	0	0	0	0.020674	1	8031	8031		120.87	46.613	1	11460000			15904	5044;7071	9870	9918	16155	16155					0.0173478666936262
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7787475585938	2	526.777805	1051.54106	1.7098	0.00090067	-0.6613	-0.00034836	1.0485	0.00055231	526.7774277829136	23.227	0.36651	23.227	23.136	23.502	0					17	8	3	0	0	0	0.020674	1	7040	7040		120.87	56.661	1	1335700			15905	5044;7071	9870	9918	16156	16156					0.0173478666936262
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.778076171875	2	526.777805	1051.54106	1.2148	0.00063995	-0.68844	-0.00036266	0.5264	0.0002773	526.777454179983	23.21	0.27784	23.21	23.123	23.401	0					12	6	2	0	0	0	0.16806	2	7055	7034;7055		65.465	21.559	1	975420			15906	5044;7071	9870	9918	16157;16158	16158					0.0173478666936262
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7781372070312	2	526.777805	1051.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.323	1	23.323	22.823	23.823	0								0	0	0	0.024296	1	7893	7893		98.582	38.464	1				15907	5044;7071	9870	9918	16159	16159					0.0173478666936262
HEAERTEVL	9	Unmodified	_HEAERTEVL_					0	0	0		ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;CNTROB|p.L713Cfs*27|1|0.4|ENSG00000170037|chr17:7947710-7947710|T/-|frameshift_variant;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2752075195312	2	542.275095	1082.53564	1.8497	0.0010031	-0.81541	-0.00044218	1.0343	0.00056089	542.2745135317049	21.238	0.1521	21.238	21.187	21.34	0					6	3	2	0	0	0	0.032383	1	6729	6729		106.68	37.055	1	264720			15908	584	9871	9919	16160	16160					-0.0023293691308481357
HEAERTEVL	9	Unmodified	_HEAERTEVL_					0	0	0		ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;CNTROB|p.L713Cfs*27|1|0.4|ENSG00000170037|chr17:7947710-7947710|T/-|frameshift_variant;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.2755737304688	2	542.275095	1082.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.967	1	20.967	20.467	21.467	0								0	0	0	0.23445	1	5943	5943		45.972	5.3996	1				15909	584	9871	9919	16161	16161					-0.0023293691308481357
HEAERTEVL	9	Unmodified	_HEAERTEVL_					0	0	0		ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;CNTROB|p.L713Cfs*27|1|0.4|ENSG00000170037|chr17:7947710-7947710|T/-|frameshift_variant;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2760009765625	2	542.275095	1082.53564	1.2412	0.00067305	-0.39809	-0.00021587	0.84307	0.00045717	542.2748624619228	21.184	0.36119	21.184	20.98	21.341	0					10	7	3	0	0	0	0.056004	1	6973	6973		93.143	33.025	1	433530			15910	584	9871	9919	16162	16162					-0.0023293691308481357
HEAERTEVL	9	Unmodified	_HEAERTEVL_					0	0	0		ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;CNTROB|p.L713Cfs*27|1|0.4|ENSG00000170037|chr17:7947710-7947710|T/-|frameshift_variant;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.27587890625	2	542.275095	1082.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.023	1	21.023	20.523	21.523	0								0	0	0	0.3245	1	6020	6020		30.318	2.2362	1				15911	584	9871	9919	16163	16163					-0.0023293691308481357
HEAERTEVL	9	Unmodified	_HEAERTEVL_					0	0	0		ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;CNTROB|p.L713Cfs*27|1|0.4|ENSG00000170037|chr17:7947710-7947710|T/-|frameshift_variant;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2757568359375	2	542.275095	1082.53564	0.63047	0.00034189	2.0835	0.0011299	2.714	0.0014717	542.2762293276134	21.15	0.71177	21.15	20.692	21.404	0					22	14	2	0	0	0	0.13726	1	6852	6852		70.816	21.375	1	356370			15912	584	9871	9919	16164	16164					-0.0023293691308481357
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7987060546875	2	533.798206	1065.58186	1.1077	0.00059129	-0.13393	-7.1494E-05	0.97377	0.0005198	533.798156338919	28.066	0.36025	28.066	27.956	28.316	0					34	12	4	0	0	0	0.0071053	1	8701	8701		148.99	44.24	1	1043900			15913	3051	9872	9920	16165	16165					0.05169127988983746
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.798095703125	2	533.798206	1065.58186	2.0508	0.0010947	-0.93793	-0.00050066	1.1129	0.00059405	533.7977068119777	28.129	0.31	28.129	28.043	28.353	0					14	7	3	0	0	0	0.016683	1	9282	9282		127.46	53.207	1	358810			15914	3051	9872	9920	16166	16166					0.05169127988983746
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7984619140625	2	533.798206	1065.58186	1.1175	0.0005965	-0.3936	-0.00021011	0.72385	0.00038639	533.7980303330223	28.146	0.42133	28.146	28.032	28.453	0					27	10	3	0	0	0	0.00324	1	9278	9278		167.23	60.221	1	1515400			15915	3051	9872	9920	16167	16167					0.05169127988983746
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7984008789062	2	533.798206	1065.58186	0.7131	0.00038065	-0.15218	-8.1236E-05	0.56091	0.00029942	533.7981133053361	28.269	0.51535	28.269	28.109	28.624	0					33	10	4	0	0	0	0.0071053	1	10207	10207		148.99	55.791	1	3898500			15916	3051	9872	9920	16168	16168					0.05169127988983746
HEAGVHSV	8	Unmodified	_HEAGVHSV_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	418.2061767578125	2	418.206484	834.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.824	1	15.824	15.324	16.324	0								0	0	0	1.7419	1	4404	4404		45.952	16.11	1				15917	2536	9873	9921	16169	16169					-0.025408010020100846
HEAIFLFH	8	Unmodified	_HEAIFLFH_					0	0	0			REV__ENSG00000060642|ENST00000674202|PIGV	REV__ENSG00000060642|ENST00000674202|PIGV	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.26226806640625	2	507.263802	1012.51305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.949	1	24.949	24.449	25.449	0								0	0	0	1.7419	1	7441	7441		62.978	5.5258	1		+		15918	13081	9874	9922	16170	16170					0.00729508479935248
HEAKIKSL	8	Unmodified	_HEAKIKSL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;nc|ENSG00000168280|O60282-2|KIF5C;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C;ENST00000460377.1_2:149835462-149853923:+|nuORF	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2765808105469	2	463.276909	924.539266	-0.14413	-6.6773E-05	-0.20151	-9.3357E-05	-0.34565	-0.00016013	463.27689660373966	17.375	0.15344	17.375	17.268	17.421	0					5	3	2	0	0	0	0.46013	1	5153	5153		64.207	8.7031	1	293510			15919	6256	9875	9923	16171	16171					0.07397777651419801
HEAKIKSL	8	Unmodified	_HEAKIKSL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;nc|ENSG00000168280|O60282-2|KIF5C;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C;ENST00000460377.1_2:149835462-149853923:+|nuORF	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2766418457031	2	463.276909	924.539266	-0.47587	-0.00022046	-0.23487	-0.00010881	-0.71074	-0.00032927	463.27689286861573	17.348	0.20407	17.348	17.243	17.447	0					10	4	3	0	0	0	0.39125	1	4994	4994		71.877	7.6702	1	312930			15920	6256	9875	9923	16172	16172					0.07397777651419801
HEAKKVEQE	9	Unmodified	_HEAKKVEQE_					0	0	0			REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2832641601562	2	549.28292	1096.55129	1.8411	0.0010113	-1.2195	-0.00066987	0.62153	0.00034139	549.282214782221	22.037	0.26103	22.037	21.96	22.221	0					12	6	3	0	0	0	0.012915	1	7107	7107		134.81	11.603	1	2222200	+		15921	14708	9876	9924	16173	16173					0.006873496039588645
HEAKKVEQE	9	Unmodified	_HEAKKVEQE_					0	0	0			REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2838134765625	2	549.28292	1096.55129	0.36634	0.00020122	1.1209	0.00061568	1.4872	0.00081691	549.2836814938629	21.745	0.1895	21.745	21.635	21.825	0					8	5	2	0	0	0	0.023928	1	6302	6302		115.49	14.241	1	302830	+		15922	14708	9876	9924	16174	16174					0.006873496039588645
HEAKKVEQE	9	Unmodified	_HEAKKVEQE_					0	0	0			REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2833251953125	2	549.28292	1096.55129	0.54904	0.00030158	-0.20139	-0.00011062	0.34764	0.00019095	549.2829018432504	21.919	0.21324	21.919	21.776	21.989	0					7	4	2	0	0	0	0.07136	1	7361	7361		87.696	11.527	1	639970	+		15923	14708	9876	9924	16175	16175					0.006873496039588645
HEAKKVEQE	9	Unmodified	_HEAKKVEQE_					0	0	0			REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	REV__ENST00000469915.1_1_22:31332963-31338135:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2833251953125	2	549.28292	1096.55129	0.51598	0.00028342	0.85946	0.00047209	1.3754	0.0007555	549.2835786453577	21.945	0.46372	21.945	21.84	22.304	0					13	9	2	0	0	0	0.019882	1	7236	7236		122.18	4.3649	1	2643500	+		15924	14708	9876	9924	16176	16176					0.006873496039588645
HEALKENGVT	10	Unmodified	_HEALKENGVT_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2831420898438	2	549.28292	1096.55129	1.7426	0.00095717	-0.86371	-0.00047442	0.87886	0.00048275	549.2824999209629	21.907	0.26153	21.907	21.809	22.07	0					7	5	2	0	0	0	0.0098546	1	7350	7350		143.37	10.616	1	1987400			15925	2550	9877	9925	16177	16177					0.006873496039588645
HEALKENGVT	10	Unmodified	_HEALKENGVT_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2833251953125	2	549.28292	1096.55129	1.1581	0.00063613	-0.41116	-0.00022584	0.74695	0.00041029	549.2826972283526	21.811	0.15163	21.811	21.719	21.871	0					6	3	2	0	0	0	0.20981	1	6401	6401		78.264	14.057	1	339610			15926	2550	9877	9925	16178	16178					0.006873496039588645
HEALKENGVT	10	Unmodified	_HEALKENGVT_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.283447265625	2	549.28292	1096.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.95	1	21.95	21.45	22.45	0								0	0	0	0.017571	1	7227	7227		123.21	1.0321	1				15927	2550	9877	9925	16179	16179					0.006873496039588645
HEAMKLVTM	9	Unmodified	_HEAMKLVTM_					0	0	0		nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000530149.1_1_11:213233-213428:+|nuORF;ENST00000526557.1_1_11:213233-214347:+|nuORF	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.271484375	2	530.269912	1058.52527	1.9823	0.0010512	0.37625	0.00019951	2.3586	0.0012507	530.2702088699966	30.386	0.10015	30.386	30.294	30.394	0					4	2	2	0	0	0	0.070005	1	10941	10941		88.177	36.841	1	54662			15928	6692	9878	9926	16180	16180					-0.0016495916354415385
HEAMKLVTM	9	Unmodified	_HEAMKLVTM_					0	0	0		nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000530149.1_1_11:213233-213428:+|nuORF;ENST00000526557.1_1_11:213233-214347:+|nuORF	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2699584960938	2	530.269912	1058.52527	0.93186	0.00049414	-1.1319	-0.00060021	-0.20004	-0.00010607	530.269875542884	30.332	0.24477	30.332	30.235	30.479	0					8	5	3	0	0	0	0.21419	1	11338	11338		59.931	13.979	1	100400			15929	6692	9878	9926	16181	16181					-0.0016495916354415385
HEAPGTFRV	9	Unmodified	_HEAPGTFRV_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2617492675781	2	507.261791	1012.50903	1.779	0.00090243	-0.25754	-0.00013064	1.5215	0.00077179	507.2612818839151	24.948	0.17446	24.948	24.869	25.044	0					8	5	2	0	0	0	0.33044	1	7445	7445		47.657	0.8909	1	42697			15930	5613	9879	9927	16182	16182					0.0032741898622816734
HEAPGTFRV	9	Unmodified	_HEAPGTFRV_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.26177978515625	2	507.261791	1012.50903	0.89536	0.00045418	-0.81528	-0.00041356	0.08007	4.0617E-05	507.261422690047	25.265	0.48863	25.265	25.164	25.653	0					23	11	4	0	0	0	0.098791	1	8597	8597		79.713	13.909	1	490650			15931	5613	9879	9927	16183	16183					0.0032741898622816734
HEAPGTFRV	9	Unmodified	_HEAPGTFRV_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.26177978515625	2	507.261791	1012.50903	0.86734	0.00043997	-0.26288	-0.00013335	0.60446	0.00030662	507.26136736018196	25.281	0.52694	25.281	25.148	25.675	0					25	12	3	0	0	0	0.17854	1	8637	8637		64.207	8.7031	1	628570			15932	5613	9879	9927	16184	16184					0.0032741898622816734
HEAPGTFRV	9	Unmodified	_HEAPGTFRV_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2620849609375	2	507.261791	1012.50903	3.801	0.0019281	-2.1144	-0.0010726	1.6866	0.00085556	507.2605131579325	25.032	0.13951	25.032	24.944	25.083	0					7	4	2	0	0	0	0.33044	1	7734	7734		47.657	10.498	1	78463			15933	5613	9879	9927	16185	16185					0.0032741898622816734
HEAQHGVTSL	10	Unmodified	_HEAQHGVTSL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7673950195312	2	539.767437	1077.52032	1.5969	0.00086197	-0.74862	-0.00040408	0.84831	0.00045789	539.7668535850248	20.055	0.11468	20.055	19.997	20.112	0					8	3	3	0	0	0	0.073361	1	5303	5303		101.46	24.142	1	163040			15934	1972	9880	9928	16186	16186					-0.015338037102765156
HEAQHGVTSL	10	Unmodified	_HEAQHGVTSL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7680053710938	2	539.767437	1077.52032	1.9683	0.0010624	-1.4739	-0.00079554	0.49446	0.00026689	539.7669160299541	20.439	0.28666	20.439	20.339	20.625	0					11	6	2	0	0	0	0.0049346	1	6332	6332		166.07	80.91	1	1251100			15935	1972	9880	9928	16187	16187					-0.015338037102765156
HEAQHGVTSL	10	Unmodified	_HEAQHGVTSL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.768310546875	2	539.767437	1077.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.172	1	20.172	19.672	20.672	0								0	0	0	0.060762	1	5621	5621		88.177	29.947	1				15936	1972	9880	9928	16188	16188					-0.015338037102765156
HEAQHGVTSL	10	Unmodified	_HEAQHGVTSL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.767333984375	2	539.767437	1077.52032	1.0225	0.00055193	-0.25436	-0.0001373	0.76817	0.00041464	539.7672717769328	20.181	0.14724	20.181	20.087	20.234	0					7	3	3	0	0	0	0.31894	1	5618	5618		65.157	10.381	1	222520			15937	1972	9880	9928	16189	16189					-0.015338037102765156
HEAQHGVTSL	10	Unmodified	_HEAQHGVTSL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7680053710938	2	539.767437	1077.52032	0.67578	0.00036477	0.23768	0.00012829	0.91347	0.00049306	539.7675533755787	20.309	0.26854	20.309	20.243	20.511	0					12	5	3	0	0	0	0.0087281	1	6439	6439		148.69	52.875	1	781440			15938	1972	9880	9928	16190	16190					-0.015338037102765156
HEAQHGVTSL	10	Unmodified	_HEAQHGVTSL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.767822265625	2	539.767437	1077.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.363	1	20.363	19.863	20.863	0								0	0	0	0.012705	1	6455	6455		109.44	41.945	1				15939	1972	9880	9928	16191	16191					-0.015338037102765156
HEAQIQEM	8	Unmodified	_HEAQIQEM_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2238464355469	2	493.224017	984.43348	-0.50196	-0.00024758	-0.049823	-2.4574E-05	-0.55179	-0.00027215	493.22419806216976	24.528	0.26074	24.528	24.437	24.698	0					13	6	3	0	0	0	0.42778	1	8275	8275		67.494	16.158	1	886170			15940	2007	9881	9929	16192	16192					-0.059359262563589255
HEAQIQEM	8	Unmodified	_HEAQIQEM_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2237548828125	2	493.224017	984.43348	-1.2675	-0.00062518	0.85288	0.00042066	-0.41465	-0.00020452	493.22431887142966	24.255	0.23126	24.255	24.182	24.413	0					13	7	3	0	0	0	0.58686	1	7409	7409		51.193	5.2407	1	195440			15941	2007	9881	9929	16193	16193					-0.059359262563589255
HEAQIQEM	8	Unmodified	_HEAQIQEM_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2237548828125	2	493.224017	984.43348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.331	1	24.331	23.831	24.831	0								0	0	0	1.7419	1	7570	7570		62.107	12.666	1				15942	2007	9881	9929	16194	16194					-0.059359262563589255
HEAQIQEM	8	Unmodified	_HEAQIQEM_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.22393798828125	2	493.224017	984.43348	0.86699	0.00042762	-1.3966	-0.00068886	-0.52965	-0.00026124	493.2234764413175	24.471	0.2639	24.471	24.364	24.628	0					16	5	4	0	0	0	0.62915	1	8461	8461		44.377	3.599	1	1263900			15943	2007	9881	9929	16195	16195					-0.059359262563589255
HEAQRLLAL	9	Unmodified	_HEAQRLLAL_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8064575195312	2	525.806365	1049.59818	0.58386	0.000307	-0.7396	-0.00038889	-0.15574	-8.1891E-05	525.8056963052961	32.632	0.61343	32.632	32.421	33.034	0					16	12	2	0	0	0	0.25716	1	12335	12335		54.776	37.411	1	196670			15944	6004	9882	9930	16196	16196					0.07536253945750104
HEASGVTVK	9	Unmodified	_HEASGVTVK_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-2|WDFY4;WDFY4|p.L901Sfs*22|1|0.22|ENSG00000128815|chr10:48774601-48774601|C/-|frameshift_variant;WDFY4|p.R948Tfs*54|1|0.33|ENSG00000128815|chr10:48775775-48775776|-/CA|frameshift_variant;nc|ENSG00000128815|Q6ZS81-3|WDFY4;WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2486877441406	2	464.248349	926.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.213	1	16.213	15.713	16.713	0								0	0	0	0.17378	1	3846	3846		54.776	5.3348	1				15945	3562	9883	9931	16197	16197					0.01596310375032317
HEATVRLM	8	Unmodified	_HEATVRLM_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.75274658203125	2	478.752744	955.490935	0.50147	0.00024008	-0.73651	-0.0003526	-0.23504	-0.00011253	478.75251716086626	25.152	0.1066	25.152	25.074	25.181	0					4	2	2	0	0	0	0.51384	1	8557	8557		58.782	21.623	1	55464			15946	7639	9884	9932	16198	16198					0.011409607398604749
HEAVKAIAL	9	Unmodified	_HEAVKAIAL_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2846984863281	2	476.284734	950.554916	0.59913	0.00028535	-1.0816	-0.00051516	-0.4825	-0.00022981	476.2842882760015	27.274	0.1415	27.274	27.18	27.321	0					6	3	2	0	0	0	0.028876	1	9497	9497		110.12	58.784	1	151370			15947	1274	9885	9933	16199	16199					0.07766064168458797
HEAVNGKRR	9	Unmodified	_HEAVNGKRR_					0	0	0			REV__ENST00000546741.2_3_12:33047478-33047565:-|nuORF	REV__ENST00000546741.2_3_12:33047478-33047565:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7984619140625	2	533.796863	1065.57917	1.8107	0.00096652	1.182	0.00063094	2.9926	0.0015975	533.7974654743176	28.252	0.81545	28.252	28.143	28.959	0					50	16	5	0	0	0	0.14603	1	10200	10200		68.787	0	1	12868000	+		15948	20171	9886	9934	16200	16200					0.049007173746986155
HEAVQRPR	8	Unmodified	_HEAVQRPR_					0	0	0		ENST00000413368.5_1_7:1126733-1126811:+|nuORF	ENST00000413368.5_1_7:1126733-1126811:+|nuORF	ENST00000413368.5_1_7:1126733-1126811:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7728576660156	2	496.772857	991.531161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.784	1	12.784	12.284	13.284	0								0	0	0	1.7419	1	2503	2503		17.365	2.7009	1				15949	9333	9887	9935	16201	16201					0.03505643454661822
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(91)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.27001953125	2	550.26929	1098.52403	1.5516	0.00085378	0.30817	0.00016958	1.8597	0.0010234	550.2693851580749	21.747	0.13065	21.747	21.683	21.813	0					8	4	2	0	0	0	0.063171	1	6042	6042		90.601	48.205	1	389800			15950	6368	9888	9936	16202	16202	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(110)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.26953125	2	550.26929	1098.52403	1.8343	0.0010094	-1.4435	-0.00079433	0.39076	0.00021502	550.2685684285492	22.08	0.49495	22.08	21.99	22.485	0					23	11	4	0	0	0	0.026538	1	7126	7126		112.41	51.439	1	3789500			15951	6368	9888	9936	16203	16203	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(70)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.26953125	2	550.26929	1098.52403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.78	1	21.78	21.28	22.28	0								0	0	0	0.10826	1	6308	6308		69.628	10.846	1				15952	6368	9888	9936	16204	16204	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(82)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2696533203125	2	550.26929	1098.52403	0.32184	0.0001771	-0.0095438	-5.2517E-06	0.3123	0.00017185	550.2697442704119	21.783	0.15446	21.783	21.706	21.86	0					10	4	3	0	0	0	0.087861	1	6316	6316		82.241	34.325	1	306190			15953	6368	9888	9936	16205	16205	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(64)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2694702148438	2	550.26929	1098.52403	0.44237	0.00024342	-0.68313	-0.0003759	-0.24076	-0.00013248	550.2690605224943	21.981	0.16332	21.981	21.874	22.037	0					7	3	3	0	0	0	0.18416	1	7383	7383		63.534	22.756	1	406360			15954	6368	9888	9936	16206	16206	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(83)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.26953125	2	550.26929	1098.52403	1.6921	0.00093113	-1.3884	-0.00076402	0.30368	0.00016711	550.2686391377429	21.964	0.26166	21.964	21.858	22.119	0					14	5	3	0	0	0	0.085655	1	7374	7374		82.75	40.354	1	2365000			15955	6368	9888	9936	16207	16207	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(96)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2695922851562	2	550.26929	1098.52403	1.8627	0.001025	-1.2812	-0.00070498	0.58158	0.00032002	550.2686025465393	21.828	0.15295	21.828	21.776	21.929	0					5	3	2	0	0	0	0.048471	1	6408	6408		95.815	48.158	1	419920			15956	6368	9888	9936	16208	16208	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(58)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2698974609375	2	550.26929	1098.52403	1.1539	0.00063497	-0.82604	-0.00045455	0.32789	0.00018043	550.2691251042099	21.811	0.2425	21.811	21.761	22.003	0					10	5	3	0	0	0	0.22837	1	6424	6424		58.23	24.057	1	305930			15957	6368	9888	9936	16209	16209	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(150)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.26953125	2	550.26929	1098.52403	0.61054	0.00033596	-0.10255	-5.6429E-05	0.508	0.00027953	550.2693887196216	21.996	0.41655	21.996	21.887	22.304	0					18	8	4	0	0	0	0.0071053	1	7258	7258		148.99	77.691	1	2118000			15958	6368	9888	9936	16210	16210	269				-0.02129457208070562
HECASINRI	9	Carbamidomethyl (C)	_HEC(Carbamidomethyl (C))ASINRI_	HEC(1)ASINRI		HEC(120)ASINRI		0	1	0		nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2694702148438	2	550.26929	1098.52403	1.816	0.00099928	-1.6192	-0.00089098	0.19681	0.0001083	550.2684904532341	21.979	0.36744	21.979	21.871	22.239	0					18	7	3	0	0	0	0.01873	1	7252	7252		124.08	57.651	1	3871300			15959	6368	9888	9936	16211	16211	269				-0.02129457208070562
HEDDHNFEL	9	Unmodified	_HEDDHNFEL_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.2390747070312	2	578.238709	1154.46287	1.4827	0.00085737	-0.79232	-0.00045815	0.69041	0.00039922	578.2381213396795	30.853	0.31103	30.853	30.742	31.053	0					13	7	3	0	0	0	0.27249	1	11176	11176		52.937	26.244	1	115820			15960	3141	9889	9937	16212	16212					-0.10818690706537382
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	370.2205505371094	3	370.220624	1107.64004	0.4885	0.00018085	-0.32685	-0.00012101	0.16165	5.9847E-05	370.22041364844785	27.301	0.46967	27.301	27.154	27.624	0					34	17	3	0	0	0	0.39215	1	8360	8360		58.23	27.661	1	116010			15961	1125;893	9890	9938	16213	16213					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8278198242188	2	554.827298	1107.64004	0.59672	0.00033108	0.18658	0.00010352	0.7833	0.00043459	554.8273745745797	27.494	0.42612	27.494	27.366	27.792	0					26	10	3	0	0	0	0.17854	1	9598	9598		64.207	18.235	1	498590			15962	1125;893	9890	9938	16214	16214					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.8279418945312	2	554.827298	1107.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.317	1	27.317	26.817	27.817	0								0	0	0	0.22284	1	8691	8691		47.657	13.485	1				15963	1125;893	9890	9938	16215	16215					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.2205505371094	3	370.220624	1107.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.331	1	27.331	26.831	27.831	0								0	0	0	0.16876	1	8927	8927		71.877	0	1				15964	1125;893	9890	9938	16216	16216					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.22076416015625	3	370.220624	1107.64004	-0.11447	-4.238E-05	-0.31448	-0.00011643	-0.42896	-0.00015881	370.22063049629077	27.322	0.42173	27.322	27.208	27.629	0					18	10	2	0	0	0	0.50461	1	8921	8921		56.721	56.721	1	138540			15965	1125;893	9890	9938	16217	16217					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.8283081054688	2	554.827298	1107.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.325	1	27.325	26.825	27.825	0								0	0	0	0.30009	1	8925	8925		35.152	6.0025	1				15966	1125;893	9890	9938	16218	16218					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.2205810546875	3	370.220624	1107.64004	-0.25079	-9.2846E-05	-0.044641	-1.6527E-05	-0.29543	-0.00010937	370.22058164018887	27.416	1.6214	27.416	27.255	28.877	0					71	32	4	0	0	0	0.21263	1	9795	9795		85.862	29.428	1	3454900			15967	1125;893	9890	9938	16219	16219					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2;EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8276977539062	2	554.827298	1107.64004	1.8211	0.0010104	-1.0437	-0.00057908	0.77738	0.00043131	554.826648120737	27.399	0.47398	27.399	27.289	27.763	0					23	9	3	0	0	0	0.037569	1	9815	9815		101.6	16.685	1	978170			15968	1125;893	9890	9938	16220	16220					0.09052809634272307
HEDLEQKK	8	Unmodified	_HEDLEQKK_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7644653320312	2	513.764363	1025.51417	1.1234	0.00057714	-1.0876	-0.00055877	0.035753	1.8368E-05	513.76379926135	20.705	0.20603	20.705	20.61	20.816	0					11	4	4	0	0	0	0.51384	1	6480	6480		58.782	7.5893	1	769180	+		15969	13608	9891	9939	16221	16221					0.0024367805817746557
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;HERC2|p.K1446R|1|0.36|ENSG00000128731|chr15:28233678-28233678|T/C|missense_variant;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.75384521484375	2	495.753798	989.493044	0.053532	2.6539E-05	-0.20356	-0.00010092	-0.15003	-7.4377E-05	495.7537567409418	29.87	0.23599	29.87	29.799	30.035	0					19	9	3	0	0	0	0.11118	1	9449	9449		76.847	8.0598	1	392590			15970	3560;9465	9892	9940	16222	16222					-0.0021228725066748666
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;HERC2|p.K1446R|1|0.36|ENSG00000128731|chr15:28233678-28233678|T/C|missense_variant;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7537536621094	2	495.753798	989.493044	-0.037116	-1.84E-05	-0.05667	-2.8094E-05	-0.093786	-4.6495E-05	495.75379297195343	30.115	0.61378	30.115	29.916	30.529	0					27	13	4	0	0	0	0.021468	1	11232	11232		119.56	64.053	1	1239600			15971	3560;9465	9892	9940	16223	16223					-0.0021228725066748666
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;HERC2|p.K1446R|1|0.36|ENSG00000128731|chr15:28233678-28233678|T/C|missense_variant;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7532958984375	2	495.753798	989.493044	0.048611	2.4099E-05	0.19634	9.7334E-05	0.24495	0.00012143	495.7539257128861	29.944	0.19938	29.944	29.848	30.047	0					12	5	3	0	0	0	0.11118	1	10115	10115		76.847	29.189	1	179470			15972	3560;9465	9892	9940	16224	16224					-0.0021228725066748666
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;HERC2|p.K1446R|1|0.36|ENSG00000128731|chr15:28233678-28233678|T/C|missense_variant;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7532043457031	2	495.753798	989.493044	0.10746	5.3275E-05	-0.54556	-0.00027046	-0.4381	-0.00021719	495.75354270656425	29.932	0.27904	29.932	29.839	30.118	0					13	7	3	0	0	0	0.18605	1	10124	10124		63.306	20.832	1	221680			15973	3560;9465	9892	9940	16225	16225					-0.0021228725066748666
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;HERC2|p.K1446R|1|0.36|ENSG00000128731|chr15:28233678-28233678|T/C|missense_variant;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.75360107421875	2	495.753798	989.493044	-0.6684	-0.00033136	0.49342	0.00024462	-0.17498	-8.6745E-05	495.7539276729578	30.056	0.56176	30.056	29.896	30.458	0					20	11	2	0	0	0	0.05357	1	11091	11091		94.006	49.629	1	2048100			15974	3560;9465	9892	9940	16226	16226					-0.0021228725066748666
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;HERC2|p.K1446R|1|0.36|ENSG00000128731|chr15:28233678-28233678|T/C|missense_variant;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7538757324219	2	495.753798	989.493044	0.94507	0.00046852	-0.65699	-0.0003257	0.28808	0.00014282	495.75338143963967	30.09	0.31364	30.09	29.98	30.294	0					12	6	2	0	0	0	0.043797	1	11087	11087		97.473	33.265	1	1583300			15975	3560;9465	9892	9940	16227	16227					-0.0021228725066748666
HEDPGQATL	9	Unmodified	_HEDPGQATL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000480022.1_1_20:40033235-40042188:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2272033691406	2	484.227613	966.440674	-1.2455	-0.00060309	0.51727	0.00025048	-0.7282	-0.00035261	484.22773223881774	23.101	0.19318	23.101	23.029	23.222	0					11	6	2	0	0	0	0.51991	1	6894	6894		30.318	1.1682	1	128030			15976	3352	9893	9941	16228	16228					-0.04388870384286747
HEDPGQATL	9	Unmodified	_HEDPGQATL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000480022.1_1_20:40033235-40042188:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2273864746094	2	484.227613	966.440674	0.66761	0.00032327	-1.2076	-0.00058475	-0.53998	-0.00026148	484.2270149009712	23.304	0.21576	23.304	23.246	23.462	0					9	4	3	0	0	0	0.1424	1	8023	8023		69.628	21.712	1	794940			15977	3352	9893	9941	16229	16229					-0.04388870384286747
HEDPGQATL	9	Unmodified	_HEDPGQATL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000480022.1_1_20:40033235-40042188:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2272033691406	2	484.227613	966.440674	-2.9172	-0.0014126	1.8929	0.00091658	-1.0243	-0.000496	484.22840935207944	23.13	0.13887	23.13	23.064	23.203	0					6	3	2	0	0	0	0.38666	1	7014	7014		42.864	11.334	1	121960			15978	3352	9893	9941	16230	16230					-0.04388870384286747
HEDSSPISVSP	11	Unmodified	_HEDSSPISVSP_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.7703857421875	2	577.769842	1153.52513	0.84155	0.00048622	-0.6796	-0.00039265	0.16194	9.3566E-05	577.7696140164929	26.901	0.20108	26.901	26.811	27.012	0					12	6	3	0	0	0	0.47622	1	8224	8224		45.972	4.5456	1	153070	+		15979	13713	9894	9942	16231	16231					-0.04548964358195917
HEEAIHAV	8	Unmodified	_HEEAIHAV_					0	0	0		ENST00000601869.1_1_19:47223861-47224062:-|nuORF;ENST00000594581.5_1_19:47223861-47225468:-|nuORF;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4	ENST00000601869.1_1_19:47223861-47224062:-|nuORF	ENST00000601869.1_1_19:47223861-47224062:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.22705078125	2	453.227417	904.44028	0.29409	0.00013329	-0.92601	-0.00041969	-0.63191	-0.0002864	453.22702530062963	19.946	0.11935	19.946	19.886	20.005	0					4	2	2	0	0	0	0.23567	1	6118	6118		119.22	63.717	1	255680			15980	1833	9895	9943	16232	16232					-0.01576245313481195
HEEEKRSAL	9	Unmodified	_HEEEKRSAL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7815551757812	2	549.780544	1097.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.475	1	14.475	13.975	14.975	0								0	0	0	0.20989	1	3139	3139		49.536	13.089	1				15981	7502	9896	9944	16233	16233					0.0016646546118863625
HEEEKRSAL	9	Unmodified	_HEEEKRSAL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.781005859375	2	549.780544	1097.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.714	1	14.714	14.214	15.214	0								0	0	0	0.040385	1	3722	3722		90.601	13.754	1				15982	7502	9896	9944	16234	16234					0.0016646546118863625
HEEESGGRSV	10	Unmodified	_HEEESGGRSV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.745361328125	2	543.744159	1085.47377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.012	1	14.012	13.512	14.512	0								0	0	0	0.38475	1	2824	2824		35.152	3.1972	1				15983	1219	9897	9945	16235	16235					-0.06555288332219789
HEEESGGRSV	10	Unmodified	_HEEESGGRSV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7446899414062	2	543.744159	1085.47377	1.8779	0.0010211	-0.89811	-0.00048834	0.97981	0.00053277	543.7435945984593	14.302	0.1673	14.302	14.223	14.39	0					10	4	3	0	0	0	0.23612	1	3464	3464		75.043	21.692	1	404410			15984	1219	9897	9945	16236	16236					-0.06555288332219789
HEEESGGRSV	10	Unmodified	_HEEESGGRSV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.744384765625	2	543.744159	1085.47377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.268	1	14.268	13.768	14.768	0								0	0	0	0.0081585	1	3663	3663		104.01	27.167	1				15985	1219	9897	9945	16237	16237					-0.06555288332219789
HEEESGGRSV	10	Unmodified	_HEEESGGRSV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7447509765625	2	543.744159	1085.47377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.291	1	14.291	13.791	14.791	0								0	0	0	0.17743	1	3521	3521		66.962	21.01	1				15986	1219	9897	9945	16238	16238					-0.06555288332219789
HEEESGGRSV	10	Unmodified	_HEEESGGRSV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7448120117188	2	543.744159	1085.47377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.276	1	14.276	13.776	14.776	0								0	0	0	0.097225	1	3514	3514		80.455	14.651	1				15987	1219	9897	9945	16239	16239					-0.06555288332219789
HEEHSRAAA	9	Unmodified	_HEEHSRAAA_					0	0	0		nc|ENSG00000187498|P02462-2|COL4A1;COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant;COL4A1|p.P1437Qfs*12|2|0.09|ENSG00000187498|chr13:110162382-110162382|G/-|frameshift_variant;ENSG00000187498|ENST00000375820|COL4A1	nc|ENSG00000187498|P02462-2|COL4A1	nc|ENSG00000187498|P02462-2|COL4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2363586425781	2	504.236304	1006.45806	1.0284	0.00051857	-1.0975	-0.00055342	-0.06911	-3.4848E-05	504.2359538864376	11.018	0.085016	11.018	10.986	11.071	0					7	3	3	0	0	0	0.022698	1	2166	2166		90.601	27.295	1	262310			15988	608	9898	9946	16240	16240					-0.04491530058623994
HEEIAMATV	9	Unmodified	_HEEIAMATV_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7423400878906	2	500.742042	999.469531	1.1015	0.00055156	-0.5606	-0.00028072	0.54089	0.00027084	500.74174013578295	32.866	0.17181	32.866	32.754	32.926	0					5	3	2	0	0	0	0.20551	1	12441	12441		60.972	2.742	1	941440			15989	4912	9899	9947	16241	16241					-0.030224690795080278
HEEISRQLS	9	Unmodified	_HEEISRQLS_					0	0	0			REV__DISP1|p.E1470Gfs*5|1|0.31|ENSG00000154309|chr1:223005800-223005801|-/G|frameshift_variant	REV__DISP1|p.E1470Gfs*5|1|0.31|ENSG00000154309|chr1:223005800-223005801|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.7801513671875	2	549.780544	1097.54654	1.2698	0.00069808	-1.2502	-0.00068733	0.019569	1.0759E-05	549.780021766426	14.48	0.093305	14.48	14.435	14.529	0					7	4	2	0	0	0	0.19605	1	2980	2980		62.107	5.3864	1	73826	+		15990	12711	9900	9948	16242	16242					0.0016646546118863625
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.80615234375	2	557.803823	1113.59309	1.4251	0.0007949	0.16043	8.9488E-05	1.5855	0.00088439	557.804259039955	21.253	0.15276	21.253	21.173	21.326	0					6	4	2	0	0	0	0.13726	1	5816	5816		54.776	16.965	1	32704			15991	1895	9901	9949	16243	16243					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.8043212890625	2	557.803823	1113.59309	1.8039	0.0010062	-1.1317	-0.00063127	0.67222	0.00037497	557.803153563938	21.524	0.40483	21.524	21.433	21.837	0					13	9	2	0	0	0	0.011389	1	6866	6866		110.12	45.913	1	507150			15992	1895	9901	9949	16244	16244					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.20501708984375	3	372.204974	1113.59309	0.3843	0.00014304	-0.35019	-0.00013034	0.034115	1.2698E-05	372.20479611555396	21.558	0.61077	21.558	21.42	22.031	0					30	14	3	0	0	0	0.38666	1	6855	6855		42.864	5.0528	1	1668200			15993	1895	9901	9949	16245	16245					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8035888671875	2	557.803823	1113.59309	0.11902	6.6393E-05	-0.024093	-1.3439E-05	0.094932	5.2953E-05	557.8037782117931	21.249	0.2356	21.249	21.193	21.428	0					12	7	2	0	0	0	0.15558	2	6067	6051;6067		69.628	25.511	1	114230			15994	1895	9901	9949	16246;16247	16247					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8040771484375	2	557.803823	1113.59309	1.7321	0.00096619	-0.2621	-0.0001462	1.47	0.00081999	557.8031513790252	21.415	0.51818	21.415	21.307	21.825	0					24	10	3	0	0	0	0.003936	1	7113	7113		122.18	37.26	1	840900			15995	1895	9901	9949	16248	16248					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.8041381835938	2	557.803823	1113.59309	1.1233	0.00062656	0.39567	0.0002207	1.5189	0.00084727	557.8040097912543	21.349	0.20199	21.349	21.246	21.448	0					7	4	2	0	0	0	0.18416	1	6188	6188		39.253	12.56	1	90222			15996	1895	9901	9949	16249	16249					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.2049255371094	3	372.204974	1113.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.362	1	21.362	20.862	21.862	0								0	0	0	0.17415	1	6180	6180		54.722	29.596	1				15997	1895	9901	9949	16250	16250					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.80419921875	2	557.803823	1113.59309	1.8247	0.0010178	-0.70218	-0.00039168	1.1225	0.00062613	557.803121476113	21.429	0.41702	21.429	21.321	21.738	0					21	8	3	0	0	0	0.017421	1	6986	6986		110.12	25.204	1	1421200			15998	1895	9901	9949	16251	16251					0.04083950083122545
HEEKVFRAV	9	Unmodified	_HEEKVFRAV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.8041381835938	2	557.803823	1113.59309	3.4796	0.0019409	-1.9985	-0.0011148	1.4811	0.00082614	557.8024083806525	21.412	0.46879	21.412	21.355	21.823	0					18	9	2	0	0	0	0.0067848	1	6981	6981		134.81	44.441	1	1002000			15999	1895	9901	9949	16252	16252					0.04083950083122545
HEELWKLN	8	Unmodified	_HEELWKLN_					0	0	0		TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232;ENST00000502857.6_1_5:110002437-110003053:-|nuORF	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7758178710938	2	534.777274	1067.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.665	1	16.665	16.165	17.165	0								0	0	0	1.7419	1	4806	4806		42.396	0.96952	1				16000	7174	9902	9950	16253	16253					0.008925723004722386
HEENLKTK	8	Unmodified	_HEENLKTK_					0	0	0		ENST00000433398.1_1_7:66071742-66071856:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.5135803222656	3	333.513696	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.696	1	12.696	12.196	13.196	0								0	0	0	1.7419	1	2724	2724		52.937	18.764	1				16001	4134	9903	9951	16254	16254					0.02039981920813716
HEENLKTK	8	Unmodified	_HEENLKTK_					0	0	0		ENST00000433398.1_1_7:66071742-66071856:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.76690673828125	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.702	1	12.702	12.202	13.202	0								0	0	0	1.7419	1	2923	2923		66.429	5.4573	1				16002	4134	9903	9951	16255	16255					0.02039981920813716
HEENLKTKKQQ	11	Unmodified	_HEENLKTKKQQ_					0	0	0		ENST00000433398.1_1_7:66071742-66071856:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.5845031738281	3	461.584402	1381.73138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.03	1	12.03	11.53	12.53	0								0	0	0	0.37918	1	2447	2447		41.109	20.794	1				16003	4134	9904	9952	16256	16256					0.055780285409582575
HEENLKTKKQQ	11	Unmodified	_HEENLKTKKQQ_					0	0	0		ENST00000433398.1_1_7:66071742-66071856:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	691.8726806640625	2	691.872965	1381.73138	-1.7959	-0.0012425	1.3291	0.00091955	-0.46682	-0.00032298	691.8736180684415	12.005	0.061975	12.005	11.969	12.031	0					6	2	3	0	0	0	0.16041	1	2439	2439		89.029	43.057	1	101000			16004	4134	9904	9952	16257	16257					0.055780285409582575
HEENLKTKKQQ	11	Unmodified	_HEENLKTKKQQ_					0	0	0		ENST00000433398.1_1_7:66071742-66071856:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	691.8733520507812	2	691.872965	1381.73138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.029	1	12.029	11.529	12.529	0								0	0	0	0.43892	1	2463	2463		31.634	9.9485	1				16005	4134	9904	9952	16258	16258					0.055780285409582575
HEESREYSL	9	Unmodified	_HEESREYSL_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2628173828125	2	575.262185	1148.50982	1.6082	0.00092516	-1.0507	-0.00060442	0.55754	0.00032073	575.2616906938472	23.137	0.3196	23.137	23.049	23.369	0					14	7	3	0	0	0	0.070005	1	7614	7614		88.177	29.395	1	616400			16006	6453	9905	9953	16259	16259					-0.05849831155364882
HEESREYSL	9	Unmodified	_HEESREYSL_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2630004882812	2	575.262185	1148.50982	0.15322	8.8144E-05	0.13414	7.7167E-05	0.28737	0.00016531	575.2622988935107	23.046	0.36211	23.046	22.939	23.301	0					12	7	3	0	0	0	0.011389	1	7746	7746		138.06	66.185	1	583830			16007	6453	9905	9953	16260	16260					-0.05849831155364882
HEFHSPAL	8	Unmodified	_HEFHSPAL_					0	0	0		EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENST00000569223.1_1_15:42235208-42264692:-|nuORF;EHD3|p.V203Sfs*16|1|0.28|ENSG00000013016|chr2:31260614-31260614|G/-|frameshift_variant;ENSG00000013016|ENST00000322054|EHD3	EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	EHD1|p.E248Rfs*50|1|0.19|ENSG00000110047|chr11:64860098-64860098|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.22955322265625	2	469.229959	936.445365	-0.1265	-5.9356E-05	-0.91693	-0.00043025	-1.0434	-0.00048961	469.2295228346071	26.435	0.8596	26.435	25.885	26.744	0					28	17	2	0	0	0	0.61938	1	9400	9400		45.952	15.448	1	145380			16008	893	9906	9954	16261	16261					-0.025399414508569862
HEFLKEMT	8	Unmodified	_HEFLKEMT_					0	0	0			REV__HINFP|p.F32L|1|0.33|ENSG00000172273|chr11:119127040-119127040|C/A|missense_variant	REV__HINFP|p.F32L|1|0.33|ENSG00000172273|chr11:119127040-119127040|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7526245117188	2	517.75241	1033.49027	1.5358	0.00079518	-1.3459	-0.00069683	0.18995	9.8348E-05	517.7516583744156	37.78	0.3477	37.78	37.56	37.908	0					17	11	2	0	0	0	0.69548	1	14773	14773		34.173	0.65696	1	196310	+		16009	20749	9907	9955	16262	16262					-0.025138786998240903
HEFVDILGL	9	Unmodified	_HEFVDILGL_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;chr12:15595640-15596090|345|13.48|0.69|4.28|+|ENST00000674286|PTPRO,PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.7796020507812	2	521.782025	1041.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.147	1	12.147	11.647	12.647	0								0	0	0	0.37233	1	2297	2297		18.324	0	1				16010	4967	9908	9956	16263	16263					0.030383405859993218
HEFVDILGL	9	Unmodified	_HEFVDILGL_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;chr12:15595640-15596090|345|13.48|0.69|4.28|+|ENST00000674286|PTPRO,PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.281005859375	2	521.782025	1041.5495	-1.3192	-0.00068832	-0.53339	-0.00027831	-1.8526	-0.00096664	521.7817182937241	12.085	0.2812	12.085	11.906	12.188	0					30	17	2	0	0	0	0.5741	1	2306	2306		24.203	5.0992	1	139150			16011	4967	9908	9956	16264	16264					0.030383405859993218
HEFVNVKQ	8	Unmodified	_HEFVNVKQ_					0	0	0			REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7644348144531	2	500.764166	999.513779	0.018177	9.1024E-06	0.3973	0.00019895	0.41547	0.00020805	500.7642585339206	21.104	0.16372	21.104	21.028	21.192	0					5	3	2	0	0	0	0.5676	1	6952	6952		53.351	7.3995	1	101990	+		16012	20063	9909	9957	16265	16265					0.014003031290030776
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.3038330078125	2	519.303124	1036.5917	1.4308	0.000743	-0.025321	-1.3149E-05	1.4054	0.00072985	519.8046160508939	37.697	0.21359	37.697	37.618	37.832	0					19	12	2	0	0	0	0.046074	1	12324	12324		101.25	19.012	1	120200			16013	3100	9910	9958	16266	16266					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.30322265625	2	519.303124	1036.5917	1.3861	0.00071983	-0.75395	-0.00039153	0.63219	0.0003283	519.3027100305378	38.012	0.45697	38.012	37.882	38.339	0					48	20	4	0	0	0	0.12278	1	14411	14411		67.494	19.836	1	1839500			16014	3100	9910	9958	16267	16267					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.303955078125	2	519.303124	1036.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.741	1	37.741	37.241	38.241	0								0	0	0	0.19616	1	12751	12751		62.107	6.6032	1				16015	3100	9910	9958	16268	16268					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.3037109375	2	519.303124	1036.5917	1.1282	0.00058587	0.4893	0.0002541	1.6175	0.00083997	519.3033375989523	37.995	0.35954	37.995	37.853	38.213	0					29	12	3	0	0	0	0.035106	1	14861	14861		98.629	26.752	1	258680			16016	3100	9910	9958	16269	16269					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.3032836914062	2	519.303124	1036.5917	1.6293	0.00084609	0.28278	0.00014685	1.9121	0.00099294	519.3028168870666	37.961	0.44556	37.961	37.81	38.255	0					34	15	3	0	0	0	0.082776	1	14857	14857		67.494	4.1874	1	606980			16017	3100	9910	9958	16270	16270					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.3034057617188	2	519.303124	1036.5917	1.3252	0.0006882	-0.020345	-1.0565E-05	1.3049	0.00067764	519.3029643379222	37.771	0.21605	37.771	37.655	37.871	0					17	10	2	0	0	0	0.11411	1	13495	13495		79.713	15.505	1	127890			16018	3100	9910	9958	16271	16271					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.3037109375	2	519.303124	1036.5917	0.9788	0.0005083	0.73234	0.0003803	1.7111	0.0008886	519.3034175059888	37.74	0.19831	37.74	37.666	37.865	0					16	9	2	0	0	0	0.39283	1	13488	13488		51.193	6.8155	1	121200			16019	3100	9910	9958	16272	16272					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.3037109375	2	519.303124	1036.5917	0.29192	0.0001516	-0.052895	-2.7469E-05	0.23903	0.00012413	519.3030159175929	37.861	0.43264	37.861	37.754	38.186	0					25	9	4	0	0	0	0.046074	1	14826	14826		90.601	37.664	1	1300800			16020	3100	9910	9958	16273	16273					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.303466796875	2	519.303124	1036.5917	1.6051	0.00083354	-0.5106	-0.00026516	1.0945	0.00056839	519.3025937579353	37.895	0.443	37.895	37.596	38.039	0					28	9	4	0	0	0	0.0071744	1	14840	14840		145.16	60.24	1	1873300			16021	3100	9910	9958	16274	16274					0.07486315994378856
HEGDKVLKE	9	Unmodified	_HEGDKVLKE_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7806396484375	2	527.780013	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.109	1	19.109	18.609	19.609	0								0	0	0	0.3119	1	5124	5124		32.812	1.2826	1		+		16022	12837	9911	9959	16275	16275					0.02084251092287559
HEGFAVRN	8	Unmodified	_HEGFAVRN_					0	0	0			REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2332458496094	2	465.233033	928.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.02	1	44.02	43.52	44.52	0								0	0	0	1.7419	1	17179	17179		26.796	2.5934	1		+		16023	16295	9912	9960	16276	16276					-0.015574232193444004
HEGIVHDAM	9	Unmodified	_HEGIVHDAM_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7318115234375	2	504.732009	1007.44946	0.10716	5.4085E-05	-0.58308	-0.0002943	-0.47593	-0.00024022	504.7320432377657	22.62	0.20982	22.62	22.567	22.777	0					9	4	3	0	0	0	0.047412	1	7691	7691		96.19	46.749	1	357680			16024	964	9913	9961	16277	16277					-0.053962200194632715
HEGIVHDAM	9	Unmodified	_HEGIVHDAM_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7314453125	2	504.732009	1007.44946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.565	1	22.565	22.065	23.065	0								0	0	0	0.36266	1	6743	6743		21.96	0	1				16025	964	9913	9961	16278	16278					-0.053962200194632715
HEGKENIRAA	10	Unmodified	_HEGKENIRAA_					0	0	0		nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000512397.1_1_4:17579088-17584030:+|nuORF	nc|ENSG00000002549|P28838-2|LAP3	nc|ENSG00000002549|P28838-2|LAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7947998046875	2	562.793986	1123.57342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.813	1	14.813	14.313	15.313	0								0	0	0	0.074065	1	3691	3691		85.161	37.503	1				16026	927	9914	9962	16279	16279					0.01657574072373791
HEGKSFQL	8	Unmodified	_HEGKSFQL_					0	0	0		ENST00000462822.1_1_10:45465650-45477981:+|nuORF;nc|ENSG00000107551|Q9H2L5-4|RASSF4;ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF	ENST00000462822.1_1_10:45465650-45477981:+|nuORF	ENST00000462822.1_1_10:45465650-45477981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.24267578125	2	473.243067	944.47158	-0.12202	-5.7746E-05	-0.57051	-0.00026999	-0.69253	-0.00032774	473.2428169982554	24.521	0.81097	24.521	24.36	25.171	0					30	16	4	0	0	0	0.5535	1	8601	8601		54.776	1.4249	1	2055100			16027	2485	9915	9963	16280	16280					-0.0028767227937578355
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.3053283691406	2	505.305667	1008.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.608	1	33.608	33.108	34.108	0								0	0	0	0.13137	1	10947	10947		64.207	14.766	1				16028	4915	9916	9964	16281	16281					0.09282619856969632
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.3053894042969	2	505.305667	1008.59678	0.80549	0.00040702	-1.2388	-0.00062595	-0.43326	-0.00021893	505.30499352362824	33.885	0.30893	33.885	33.739	34.048	0					20	8	4	0	0	0	0.02953	1	12563	12563		109.48	27.238	1	632040			16029	4915	9916	9964	16282	16282					0.09282619856969632
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.3051452636719	2	505.305667	1008.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.667	1	33.667	33.167	34.167	0								0	0	0	0.24544	1	11314	11314		44.377	1.981	1				16030	4915	9916	9964	16283	16283					0.09282619856969632
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.80645751953125	2	505.305667	1008.59678	1.058	0.00053461	-1.6719	-0.00084483	-0.61392	-0.00031022	505.30480439970773	33.871	0.29842	33.871	33.713	34.012	0					13	7	3	0	0	0	0.12834	2	12992	12992;13009		72.879	21.189	1	649510			16031	4915	9916	9964	16284;16285	16284					0.09282619856969632
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.3065185546875	2	505.305667	1008.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.641	1	33.641	33.141	34.141	0								0	0	0	0.24544	1	11828	11828		44.377	8.7589	1				16032	4915	9916	9964	16286	16286					0.09282619856969632
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.3057861328125	2	505.305667	1008.59678	-0.3108	-0.00015705	0.787	0.00039768	0.4762	0.00024063	505.30600269821633	33.817	0.32114	33.817	33.7	34.021	0					18	7	3	0	0	0	0.095583	1	12869	12869		80.455	23.734	1	556990			16033	4915	9916	9964	16287	16287					0.09282619856969632
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.3055419921875	2	505.305667	1008.59678	1.2307	0.00062189	-1.484	-0.00074989	-0.25331	-0.000128	505.30484930925115	33.808	0.41958	33.808	33.633	34.053	0					16	9	3	0	0	0	0.11411	1	12897	12897		76.17	24.977	1	903140			16034	4915	9916	9964	16288	16288					0.09282619856969632
HEGTLVHAV	9	Unmodified	_HEGTLVHAV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7569885253906	2	481.756341	961.498129	0.38857	0.0001872	0.64687	0.00031163	1.0354	0.00049883	481.7566991490127	22.54	0.14507	22.54	22.446	22.591	0					5	3	2	0	0	0	0.16524	2	7346	7326;7346		65.803	12.779	1	154220			16035	1802	9917	9965	16289;16290	16290					0.015840166119346577
HEGTLVHAV	9	Unmodified	_HEGTLVHAV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7561340332031	2	481.756341	961.498129	-0.10517	-5.0667E-05	-1.1978	-0.00057704	-1.303	-0.00062771	481.7562385872096	22.426	0.16665	22.426	22.318	22.485	0					5	3	2	0	0	0	0.087582	1	7603	7603		82.305	32.28	1	101220			16036	1802	9917	9965	16291	16291					0.015840166119346577
HEGVRAEK	8	Unmodified	_HEGVRAEK_					0	0	0			REV__ENST00000500537.2_1_11:112834013-112834106:-|nuORF	REV__ENST00000500537.2_1_11:112834013-112834106:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2457580566406	2	463.246141	924.477728	0.057699	2.6729E-05	-0.67914	-0.00031461	-0.62144	-0.00028788	463.2457314692159	17.366	0.10119	17.366	17.314	17.415	0					4	2	2	0	0	0	0.46905	1	4896	4896		63.306	11.971	1	210130	+		16037	19805	9918	9966	16292	16292					0.012468459521301156
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.240966796875	2	538.240532	1074.46651	2.0525	0.0011048	-1.4942	-0.00080422	0.55838	0.00030054	538.2396869587217	15.984	0.22079	15.984	15.897	16.118	0					7	5	2	0	0	0	0.16806	1	4253	4253		65.465	33.936	1	392480			16038	7371	9919	9967	16293	16293					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.1628723144531	3	359.16278	1074.46651	0.48396	0.00017382	-0.55087	-0.00019785	-0.066909	-2.4031E-05	359.1626843035919	15.974	0.22054	15.974	15.886	16.107	0					12	5	3	0	0	0	0.16002	1	4246	4246		72.879	32.864	1	795410			16039	7371	9919	9967	16294	16294					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.24072265625	2	538.240532	1074.46651	1.9063	0.001026	-1.5073	-0.00081127	0.399	0.00021476	538.2397164100627	15.922	0.36549	15.922	15.864	16.23	0					14	7	3	0	0	0	0.04067	1	4461	4461		98.582	45.231	1	820420			16040	7371	9919	9967	16295	16295					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2411499023438	2	538.240532	1074.46651	1.0111	0.0005442	-0.27489	-0.00014796	0.73618	0.00039624	538.240296150352	15.76	0.10241	15.76	15.719	15.821	0					5	4	2	0	0	0	0.24334	1	3603	3603		56.434	22.261	1	42319			16041	7371	9919	9967	16296	16296					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2417602539062	2	538.240532	1074.46651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.783	1	15.783	15.283	16.283	0								0	0	0	0.18645	1	3610	3610		52.937	17.318	1				16042	7371	9919	9967	16297	16297					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.240966796875	2	538.240532	1074.46651	2.0186	0.0010865	-1.5226	-0.00081954	0.49603	0.00026698	538.2399137525416	15.939	0.31938	15.939	15.88	16.2	0					11	6	3	0	0	0	0.063171	1	4323	4323		90.601	28.493	1	1163900			16043	7371	9919	9967	16298	16298					-0.06774299413655172
HEHGQLHSM	9	Oxidation (M)	_HEHGQLHSM(Oxidation (M))_		HEHGQLHSM(1)		HEHGQLHSM(56)	0	0	1		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2389526367188	2	546.23799	1090.46143	3.7713	0.00206	-2.4744	-0.0013516	1.297	0.00070845	546.2365531281617	12.634	0.3572	12.634	12.559	12.916	0					12	8	2	0	0	0	0.24334	1	2734	2734		56.434	20.816	1	90340			16044	7371	9919	9968	16299	16299		297			-0.0801860327628674
HEHIEILTV	9	Unmodified	_HEHIEILTV_					0	0	0		nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1;MCTS1|p.F71Lfs*12|1|0.37|ENSG00000232119|chrX:120606122-120606122|T/-|frameshift_variant;ENST00000487133.1_1_X:119739298-119742228:+|nuORF	nc|ENSG00000232119|Q9ULC4-2|MCTS1	nc|ENSG00000232119|Q9ULC4-2|MCTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.798583984375	2	545.798206	1089.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.189	1	36.189	35.689	36.689	0								0	0	0	0.091069	1	14074	14074		74.255	29.878	1				16045	7896	9920	9969	16300	16300					0.04065127988974382
HEHLVLKV	8	Unmodified	_HEHLVLKV_					0	0	0			REV__ENST00000396128.8_1_14:45398158-45398206:-|nuORF	REV__ENST00000396128.8_1_14:45398158-45398206:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.79290771484375	2	487.792727	973.5709	-0.21656	-0.00010564	0.45433	0.00022162	0.23777	0.00011598	487.79293666774015	25.5	0.40315	25.5	25.386	25.789	0					19	10	3	0	0	0	0.76283	1	8179	8179		25.45	1.2474	1	314770	+		16046	18893	9921	9970	16301	16301					0.08305770405377189
HEHPVNKI	8	Unmodified	_HEHPVNKI_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.26422119140625	2	487.264333	972.514114	0.63167	0.00030779	-1.1003	-0.00053614	-0.46863	-0.00022835	487.2639556931725	16.094	0.21716	16.094	15.962	16.179	0					8	4	3	0	0	0	0.61925	1	4558	4558		44.117	25.855	1	313170			16047	5036	9922	9971	16302	16302					0.026757228488463625
HEHPVNKI	8	Unmodified	_HEHPVNKI_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.26458740234375	2	487.264333	972.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.928	1	15.928	15.428	16.428	0								0	0	0	1.7419	1	3668	3668		35.618	6.4687	1				16048	5036	9922	9971	16303	16303					0.026757228488463625
HEHPVNKI	8	Unmodified	_HEHPVNKI_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2644958496094	2	487.264333	972.514114	2.553	0.001244	-1.8346	-0.00089394	0.71843	0.00035006	487.26338739072	16.072	0.21992	16.072	16.014	16.234	0					7	4	3	0	0	0	0.34592	1	4391	4391		76.774	7.9873	1	395220			16049	5036	9922	9971	16304	16304					0.026757228488463625
HEHQANLL	8	Unmodified	_HEHQANLL_					0	0	0		ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ;SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant	ENSG00000116560|ENST00000357214|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.24591064453125	2	481.246141	960.477728	0.68487	0.00032959	-1.1649	-0.00056061	-0.48003	-0.00023101	481.2456929230687	21.466	0.41536	21.466	21.16	21.575	0					15	8	3	0	0	0	0.3049	1	7112	7112		82.241	13.454	1	1019900			16050	2987	9923	9972	16305	16305					-0.0040915404786119325
HEHQVMLM	8	Unmodified	_HEHQVMLM_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7390747070312	2	512.73878	1023.46301	1.0734	0.00055038	-0.73782	-0.00037831	0.33559	0.00017207	512.7382890840854	27.365	0.42771	27.365	27.209	27.636	0					16	10	2	0	0	0	0.63077	1	9552	9552		44.117	1.7207	1	187190			16051	4768	9924	9973	16306	16306					-0.047786855118602034
HEIAHNAAF	9	Unmodified	_HEIAHNAAF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.24603271484375	2	505.246141	1008.47773	-0.31771	-0.00016052	-0.41533	-0.00020984	-0.73304	-0.00037037	505.2457232888208	22.202	0.31551	22.202	22.037	22.353	0					11	6	3	0	0	0	0.19605	1	7360	7360		62.107	7.2128	1	285740			16052	4579	9925	9974	16307	16307					-0.02617154047868553
HEIDGKALL	9	Unmodified	_HEIDGKALL_					0	0	0		nc|ENSG00000010803|Q96GD3-6|SCMH1;nc|ENSG00000010803|Q96GD3-5|SCMH1;nc|ENSG00000010803|Q96GD3-4|SCMH1;nc|ENSG00000010803|Q96GD3-3|SCMH1;nc|ENSG00000010803|Q96GD3-2|SCMH1;nc|ENSG00000010803|Q96GD3|SCMH1;ENSG00000010803|ENST00000695335|SCMH1;nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1	nc|ENSG00000010803|Q96GD3-6|SCMH1	nc|ENSG00000010803|Q96GD3-6|SCMH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2802734375	2	498.279649	994.544745	0.56593	0.00028199	0.21088	0.00010508	0.77681	0.00038707	498.27947798817064	29.343	0.21566	29.343	29.296	29.512	0					6	5	2	0	0	0	0.021961	1	10478	10478		118.74	47.447	1	63364			16053	1040	9926	9975	16308	16308					0.04725456443236453
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2850341796875	2	537.284931	1072.55531	1.3858	0.00074456	-0.52208	-0.00028051	0.86371	0.00046406	537.2846064053483	32.125	0.19318	32.125	32.046	32.239	0					13	8	2	0	0	0	0.078509	1	10353	10353		85.161	24.189	1	123040			16054	1603	9927	9976	16309	16309					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2852783203125	2	537.284931	1072.55531	2.0988	0.0011277	-1.159	-0.00062271	0.93984	0.00050496	537.2842942928933	32.385	0.33606	32.385	32.303	32.639	0					21	8	4	0	0	0	0.0067848	1	11875	11875		150.36	78.484	1	1156000			16055	1603	9927	9976	16310	16310					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2845458984375	2	537.284931	1072.55531	-0.37522	-0.0002016	0.89878	0.0004829	0.52356	0.0002813	537.2853296764972	32.198	0.18595	32.198	32.091	32.277	0					13	8	2	0	0	0	0.24334	1	10721	10721		56.434	14.038	1	61730			16056	1603	9927	9976	16311	16311					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.28564453125	2	537.284931	1072.55531	1.3126	0.00070525	-0.48541	-0.0002608	0.82721	0.00044445	537.2846496656564	32.377	0.3853	32.377	32.242	32.627	0					20	9	3	0	0	0	0.0049871	1	12275	12275		158.07	73.159	1	449140			16057	1603	9927	9976	16312	16312					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2850341796875	2	537.284931	1072.55531	1.8797	0.0010099	-1.8842	-0.0010123	-0.0045184	-2.4276E-06	537.2837955561388	32.344	0.62009	32.344	31.99	32.61	0					30	14	4	0	0	0	0.011389	1	12285	12285		138.06	58.35	1	417200			16058	1603	9927	9976	16313	16313					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7877197265625	2	537.284931	1072.55531	2.2151	0.0011902	-1.1928	-0.00064086	1.0223	0.00054929	537.284204969494	32.186	0.21531	32.186	32.088	32.303	0					10	6	2	0	0	0	0.11898	1	11148	11148		75.043	30.666	1	66201			16059	1603	9927	9976	16314	16314					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2853393554688	2	537.284931	1072.55531	1.0345	0.00055581	-0.14849	-7.9781E-05	0.88598	0.00047603	537.2847442590022	32.163	0.2168	32.163	32.033	32.25	0					11	6	2	0	0	0	0.070005	1	11154	11154		88.177	21.748	1	108720			16060	1603	9927	9976	16315	16315					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2852172851562	2	537.284931	1072.55531	0.69757	0.00037479	0.72344	0.00038869	1.421	0.00076349	537.2853312239138	32.329	0.47325	32.329	32.219	32.693	0					21	9	3	0	0	0	0.0067848	1	12163	12163		150.36	51.732	1	1284000			16061	1603	9927	9976	16316	16316					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2852172851562	2	537.284931	1072.55531	1.9759	0.0010616	-0.87549	-0.00047039	1.1004	0.00059125	537.284455569149	32.314	0.37027	32.314	32.203	32.573	0					19	7	4	0	0	0	0.0055674	1	12180	12180		155.58	72.834	1	1265400			16062	1603	9927	9976	16317	16317					0.021934390976412033
HEIEKVNK	8	Unmodified	_HEIEKVNK_					0	0	0			REV__ENSG00000084731|ENST00000264712|KIF3C	REV__ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.77777099609375	2	498.777274	995.539994	-0.28271	-0.00014101	0.41617	0.00020757	0.13346	6.6565E-05	498.77748455007156	28.305	0.37592	28.305	28.21	28.586	0					10	9	2	0	0	0	0.43813	1	9386	9386		66.429	2.222	1	109690	+		16063	13351	9928	9977	16318	16318					0.04204572300466225
HEIKKNGI	8	Unmodified	_HEIKKNGI_					0	0	0		OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7742614746094	2	469.774534	937.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.146	1	25.146	24.646	25.646	0								0	0	0	1.7419	1	8554	8554		51.335	3.4199	1				16064	5839	9929	9978	16319	16319					0.06324893508644891
HEIVQTLSL	9	Unmodified	_HEIVQTLSL_					0	0	0		nc|ENSG00000143416|Q13228-2|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000474352.5_1_1:151338696-151341653:-|nuORF;ENST00000427977.6_1_1:151337413-151341586:-|nuORF;ENST00000455397.5_1_1:151337021-151341586:-|nuORF;ENST00000443708.5_1_1:151337021-151341586:-|nuORF;nc|ENSG00000143416|Q13228-3|SELENBP1	nc|ENSG00000143416|Q13228-2|SELENBP1	nc|ENSG00000143416|Q13228-2|SELENBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2922973632812	2	520.292756	1038.57096	1.6229	0.00084441	-2.4105	-0.0012542	-0.78755	-0.00040976	520.2915499923982	40.623	0.18451	40.623	40.578	40.762	0					8	4	2	0	0	0	0.3269	1	16150	16150		47.96	0.30219	1	325760			16065	4553	9930	9979	16320	16320					0.053217256147036096
HEKASFTNSE	10	Unmodified	_HEKASFTNSE_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23;PTPN23|p.L1014Pfs*68|1|0.36|ENSG00000076201|chr3:47410831-47410832|-/C|frameshift_variant;PTPN23|p.P1258Rfs*2|1|0.28|ENSG00000076201|chr3:47411566-47411566|C/-|frameshift_variant;PTPN23|p.Y609*|1|0.31|ENSG00000076201|chr3:47409444-47409445|TA/-|frameshift_variant;PTPN23|p.P750Lfs*53|2|0.06|ENSG00000076201|chr3:47410042-47410042|C/-|frameshift_variant;PTPN23|p.Y998Tfs*162|1|0.34|ENSG00000076201|chr3:47410785-47410785|C/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.2622680664062	2	575.262185	1148.50982	1.478	0.00085024	-0.97876	-0.00056305	0.49925	0.0002872	575.2614236747206	22.815	0.17123	22.815	22.719	22.89	0					8	5	2	0	0	0	0.52275	1	6506	6506		42.864	5.0528	1	59021			16066	1556	9931	9980	16321	16321					-0.05849831155364882
HEKASTPVL	9	Unmodified	_HEKASTPVL_					0	0	0		ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.272705078125	2	491.271824	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.284	1	21.284	20.784	21.784	0								0	0	0	0.3119	1	6085	6085		32.812	3.6629	1				16067	7395	9932	9981	16322	16322					0.03805169926170038
HEKASTPVL	9	Unmodified	_HEKASTPVL_					0	0	0		ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.77294921875	2	491.271824	980.529095	-0.063221	-3.1059E-05	-0.19725	-9.6903E-05	-0.26047	-0.00012796	491.2717882125336	21.481	0.41856	21.481	21.273	21.692	0					23	8	4	0	0	0	0.098791	2	7121	7117;7121		79.713	32.055	1	458350			16068	7395	9932	9981	16323;16324	16324					0.03805169926170038
HEKFSEVL	8	Unmodified	_HEKFSEVL_					0	0	0		ENSG00000166165|ENST00000348956|CKB;CKB|p.G303D|1|0.22|ENSG00000166165|chr14:103520181-103520181|C/T|missense_variant	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7583312988281	2	494.758549	987.502546	0.68031	0.00033659	-2.6134	-0.001293	-1.9331	-0.00095641	494.75713862495303	29.244	0.66339	29.244	29.104	29.767	0					24	14	2	0	0	0	0.25873	1	10797	10797		96.19	30.387	1	1674900			16069	5864	9933	9982	16325	16325					0.00829481034861601
HEKFSEVL	8	Unmodified	_HEKFSEVL_					0	0	0		ENSG00000166165|ENST00000348956|CKB;CKB|p.G303D|1|0.22|ENSG00000166165|chr14:103520181-103520181|C/T|missense_variant	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.75823974609375	2	494.758549	987.502546	0.9162	0.0004533	-2.0161	-0.00099747	-1.0999	-0.00054417	494.7574092845246	29.152	0.50595	29.152	29.043	29.549	0					24	10	4	0	0	0	0.23367	1	10656	10656		120.62	46.646	1	2841200			16070	5864	9933	9982	16326	16326					0.00829481034861601
HEKQEKGTL	9	Unmodified	_HEKQEKGTL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.285400390625	2	535.285463	1068.55637	2.215	0.0011857	-1.5155	-0.00081122	0.69955	0.00037446	535.2846146547911	13.459	0.14827	13.459	13.417	13.565	0					6	4	2	0	0	0	0.0079272	1	3080	3080		117.81	30.057	1	140250			16071	3242	9934	9983	16327	16327					0.024836534665837462
HEKQEKGTL	9	Unmodified	_HEKQEKGTL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2858276367188	2	535.285463	1068.55637	1.8051	0.00096627	-0.97202	-0.00052031	0.83313	0.00044596	535.2850309721489	13.467	0.18129	13.467	13.376	13.557	0					9	4	3	0	0	0	0.095583	1	3298	3298		64.207	0	1	291670			16072	3242	9934	9983	16328	16328					0.024836534665837462
HEKQEKGTL	9	Unmodified	_HEKQEKGTL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2857055664062	2	535.285463	1068.55637	1.8777	0.0010051	-1.499	-0.00080241	0.37868	0.0002027	535.2847737591657	13.43	0.1015	13.43	13.38	13.481	0					6	2	3	0	0	0	0.046074	1	3129	3129		90.601	10.888	1	272540			16073	3242	9934	9983	16329	16329					0.024836534665837462
HEKQESQDL	9	Unmodified	_HEKQESQDL_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.2626342773438	2	557.262185	1112.50982	1.8059	0.0010064	-1.2155	-0.00067738	0.5904	0.00032901	557.2615888061063	15.701	0.16668	15.701	15.658	15.824	0					8	4	3	0	0	0	0.056004	1	4122	4122		93.143	38.367	1	250640			16074	4196	9935	9984	16330	16330					-0.04193831155362204
HEKQESQDL	9	Unmodified	_HEKQESQDL_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2626342773438	2	557.262185	1112.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.72	1	15.72	15.22	16.22	0								0	0	0	0.095784	1	4354	4354		72.879	32.101	1				16075	4196	9935	9984	16331	16331					-0.04193831155362204
HEKQESQDL	9	Unmodified	_HEKQESQDL_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2625732421875	2	557.262185	1112.50982	1.2173	0.00067837	-0.48995	-0.00027303	0.72738	0.00040534	557.26192599021	15.706	0.16716	15.706	15.647	15.815	0					5	3	2	0	0	0	0.30841	1	4211	4211		49.536	1.8787	1	300120			16076	4196	9935	9984	16332	16332					-0.04193831155362204
HEKQVYDIAA	10	Unmodified	_HEKQVYDIAA_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.2984008789062	2	587.29857	1172.58259	-0.35906	-0.00021088	0.33854	0.00019882	-0.020526	-1.2055E-05	587.2990360955833	26.414	0.15004	26.414	26.349	26.499	0					8	5	2	0	0	0	0.536	1	8311	8311		41.427	9.7923	1	58561			16077	1089	9936	9985	16333	16333					0.003199226380502296
HEKQVYDIAA	10	Unmodified	_HEKQVYDIAA_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.2986450195312	2	587.29857	1172.58259	1.4357	0.00084321	-0.50793	-0.00029831	0.92782	0.0005449	587.298321178977	26.669	0.4628	26.669	26.56	27.023	0					15	9	3	0	0	0	0.46989	1	9586	9586		48.602	21.554	1	400420			16078	1089	9936	9985	16334	16334					0.003199226380502296
HEKSCDVKM	9	Carbamidomethyl (C)	_HEKSC(Carbamidomethyl (C))DVKM_	HEKSC(1)DVKM		HEKSC(56)DVKM		0	1	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.25830078125	2	567.257533	1132.50051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.55	1	15.55	15.05	16.05	0								0	0	0	0.16453	1	3513	3513		56.434	8.7765	1				16079	3622	9937	9986	16335	16335	152				-0.06043639036920467
HEKSCDVKM	9	Carbamidomethyl (C)	_HEKSC(Carbamidomethyl (C))DVKM_	HEKSC(1)DVKM		HEKSC(56)DVKM		0	1	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2579345703125	2	567.257533	1132.50051	3.4712	0.0019691	-3.1764	-0.0018018	0.29477	0.00016721	567.2559805707792	15.772	0.16717	15.772	15.664	15.832	0					11	3	4	0	0	0	0.24334	1	4246	4246		56.434	20.816	1	720600			16080	3622	9937	9986	16336	16336	152				-0.06043639036920467
HEKTEDNKL	9	Unmodified	_HEKTEDNKL_					0	0	0		nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2811279296875	2	557.280377	1112.5462	1.7142	0.00095527	0.18611	0.00010372	1.9003	0.001059	557.280467505075	14.175	0.62292	14.175	14.074	14.697	0					18	13	2	0	0	0	0.022525	1	3630	3630		117.81	56.839	1	1570800			16081	3308	9938	9987	16337	16337					-0.005569542586727039
HEKTEDNKL	9	Unmodified	_HEKTEDNKL_					0	0	0		nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.85614013671875	3	371.85601	1112.5462	0.91553	0.00034045	-0.47274	-0.00017579	0.44279	0.00016465	371.85579465025114	14.175	0.2102	14.175	14.074	14.284	0					7	4	2	0	0	0	0.4966	1	3633	3633		40.058	9.4893	1	600520			16082	3308	9938	9987	16338	16338					-0.005569542586727039
HEKTEDNKL	9	Unmodified	_HEKTEDNKL_					0	0	0		nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.28076171875	2	557.280377	1112.5462	1.824	0.0010165	-0.93013	-0.00051834	0.89391	0.00049816	557.2798231184682	14.197	0.21925	14.197	14.088	14.308	0					9	4	3	0	0	0	0.056004	1	3489	3489		93.143	34.913	1	1519400			16083	3308	9938	9987	16339	16339					-0.005569542586727039
HEKTEDNKL	9	Unmodified	_HEKTEDNKL_					0	0	0		nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.280517578125	2	557.280377	1112.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.206	1	14.206	13.706	14.706	0								0	0	0	0.00014293	1	3481	3481		134.77	63.47	1				16084	3308	9938	9987	16340	16340					-0.005569542586727039
HEKTSRTS	8	Unmodified	_HEKTSRTS_					0	0	0		ENST00000589187.5_1_6:86387693-86388418:-|nuORF	ENST00000589187.5_1_6:86387693-86388418:-|nuORF	ENST00000589187.5_1_6:86387693-86388418:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2433166503906	2	473.241055	944.467557	3.7106	0.001756	0.17186	8.1331E-05	3.8824	0.0018373	473.24102289569913	24.323	0.26517	24.323	24.223	24.488	0					13	8	2	0	0	0	0.54629	1	7424	7424		55.504	5.4797	1	183660			16085	10935	9939	9988	16341	16341					-0.006897617730828642
HEKVANGL	8	Unmodified	_HEKVANGL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.2376403808594	2	434.237784	866.461016	-0.26614	-0.00011557	-0.42961	-0.00018655	-0.69574	-0.00030212	434.23765976959294	17.953	0.16883	17.953	17.868	18.037	0					7	4	2	0	0	0	0.23519	1	4378	4378		119.56	45.582	1	511210			16086	3455;10046	9940	9989	16342	16342					0.022443450661853603
HEKVANGL	8	Unmodified	_HEKVANGL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.23773193359375	2	434.237784	866.461016	-0.44262	-0.0001922	0.083953	3.6456E-05	-0.35867	-0.00015575	434.23783132040586	18.287	0.31749	18.287	18.198	18.516	0					13	7	2	0	0	0	0.1194	1	5316	5316		157.21	66.432	1	2826400			16087	3455;10046	9940	9989	16343	16343					0.022443450661853603
HEKVANGL	8	Unmodified	_HEKVANGL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.23748779296875	2	434.237784	866.461016	-0.80716	-0.0003505	0.72041	0.00031283	-0.086749	-3.767E-05	434.23800354050064	17.991	0.16211	17.991	17.909	18.072	0					11	4	4	0	0	0	0.25102	1	4619	4619		99.375	40.593	1	631780			16088	3455;10046	9940	9989	16344	16344					0.022443450661853603
HELARKTEG	9	Unmodified	_HELARKTEG_					0	0	0		ENST00000564399.1_1_16:69355005-69355937:+|nuORF;ENSG00000132612|ENST00000254950|VPS4A	ENST00000564399.1_1_16:69355005-69355937:+|nuORF	ENST00000564399.1_1_16:69355005-69355937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7779541015625	2	520.777805	1039.54106	1.6233	0.00084536	-1.1385	-0.00059289	0.48479	0.00025247	520.7771976045111	14.048	0.46062	14.048	13.946	14.407	0					18	9	2	0	0	0	0.025517	1	3416	3416		113.41	8.665	1	2161100			16089	3801	9941	9990	16345	16345					0.02286786669378671
HELDTQLK	8	Unmodified	_HELDTQLK_					0	0	0		KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K1164Rfs*17|1|0.4|ENSG00000055609|chr7:152222008-152222009|TT/-|frameshift_variant;KMT2C|p.K1247Nfs*56|1|0.22|ENSG00000055609|chr7:152207400-152207400|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.26153564453125	2	492.261456	982.50836	-0.58928	-0.00029008	0.38935	0.00019166	-0.19993	-9.8418E-05	492.2615795014532	17.201	0.1686	17.201	17.141	17.31	0					8	3	3	0	0	0	0.34985	1	4931	4931		76.847	0	1	327320			16090	1282	9942	9991	16346	16346					0.016405795465288975
HELIITKC	8	Unmodified	_HELIITKC_					0	0	0		ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.76531982421875	2	478.76532	955.516088	0.50262	0.00024064	-0.75038	-0.00035926	-0.24776	-0.00011862	478.7650459312782	26.649	0.10428	26.649	26.598	26.702	0					4	2	2	0	0	0	0.64144	1	9229	9229		42.396	6.7778	1	64222			16091	6279	9943	9992	16347	16347					0.03655015542426554
HELMKRLM	8	Oxidation (M)	_HELMKRLM(Oxidation (M))_		HELM(0.102)KRLM(0.898)		HELM(-9.5)KRLM(9.5)	0	0	1		ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2848510742188	2	537.283354	1072.55216	4.984	0.0026778	-2.1612	-0.0011612	2.8228	0.0015167	537.2823393314295	32.217	0.12313	32.217	32.121	32.244	0					8	5	2	0	0	0	0.59411	1	10727	10727		50.025	9.4519	2	60736			16092	6396	9944	9993	16348	16348		264			0.01878149447634314
HELQEKLSPL	10	Unmodified	_HELQEKLSPL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	597.3304443359375	2	597.32987	1192.64519	0.13567	8.1038E-05	0.085117	5.0843E-05	0.22078	0.00013188	597.3297828520482	30.928	0.25034	30.928	30.82	31.07	0					13	10	2	0	0	0	0.48965	1	9883	9883		46.457	18.375	1	39637			16093	3063	9945	9994	16349	16349					0.05657068706227619
HELQEKLSPL	10	Unmodified	_HELQEKLSPL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.3300170898438	2	597.32987	1192.64519	0.047388	2.8306E-05	0.23485	0.00014028	0.28224	0.00016859	597.3299185176962	31.184	0.33941	31.184	31.033	31.372	0					21	8	4	0	0	0	0.0068485	1	11325	11325		159.28	79.563	1	387370			16094	3063	9945	9994	16350	16350					0.05657068706227619
HELQEKLSPL	10	Unmodified	_HELQEKLSPL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.3302001953125	2	597.32987	1192.64519	-0.56186	-0.00033562	0.543	0.00032435	-0.018862	-1.1267E-05	597.3300461197479	30.965	0.19548	30.965	30.87	31.065	0					13	7	2	0	0	0	0.18316	1	10221	10221		81.525	35.068	1	61650			16095	3063	9945	9994	16351	16351					0.05657068706227619
HELQEKLSPL	10	Unmodified	_HELQEKLSPL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.3303833007812	2	597.32987	1192.64519	1.2289	0.00073408	-0.41686	-0.000249	0.81207	0.00048508	597.3295043379185	31.159	0.45556	31.159	30.982	31.438	0					23	10	3	0	0	0	1.6956E-06	1	11725	11725		204.79	106.16	1	502950			16096	3063	9945	9994	16352	16352					0.05657068706227619
HELQEKLSPL	10	Unmodified	_HELQEKLSPL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.32958984375	2	597.32987	1192.64519	-1.8377	-0.0010977	2.4362	0.0014552	0.59851	0.00035751	597.3311845360217	30.933	0.24943	30.933	30.856	31.105	0					13	6	3	0	0	0	0.19191	1	10605	10605		80.455	36.077	1	91284			16097	3063	9945	9994	16353	16353					0.05657068706227619
HELVIKTL	8	Unmodified	_HELVIKTL_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589409.1_1_18:21109949-21110297:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.79443359375	2	476.794935	951.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.614	1	30.614	30.114	31.114	0								0	0	0	1.7419	1	11354	11354		56.721	12.604	1				16098	4447	9946	9995	16354	16354					0.09759234828288754
HELVVRNYI	9	Unmodified	_HELVVRNYI_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1	REV__ENSG00000181789|ENST00000314797|COPG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.3048095703125	2	571.819473	1141.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.409	1	33.409	32.909	33.909	0								0	0	0	0.29774	1	12352	12352		35.618	0	1		+		16099	16856	9947	9996	16355	16355					0.059245231172326385
HEMEKAFAF	9	Unmodified	_HEMEKAFAF_					0	0	0		ENSG00000075975|ENST00000170447|MKRN2;nc|ENSG00000075975|Q9H000-2|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2587890625	2	555.257859	1108.50117	1.7058	0.00094714	-0.47849	-0.00026568	1.2273	0.00068145	555.2569996635922	34.255	0.13098	34.255	34.192	34.323	0					5	3	2	0	0	0	0.36892	1	12745	12745		44.377	15.228	1	32074			16100	1552	9948	9997	16356	16356					-0.04874476325562682
HEMLEARTL	9	Unmodified	_HEMLEARTL_					0	0	0			REV__nc|ENSG00000229086|A6NM66|LINC01548	REV__nc|ENSG00000229086|A6NM66|LINC01548	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2828979492188	2	550.281866	1098.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.538	1	14.538	14.038	15.038	0								0	0	0	0.21054	1	3095	3095		49.442	5.0644	1		+		16101	21222	9949	9998	16357	16357					0.003845975945068858
HEMTKTASA	9	Unmodified	_HEMTKTASA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2318420410156	2	488.231842	974.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.695	1	13.695	13.195	14.195	0								0	0	0	0.0019965	1	2852	2852		120.87	44.022	1				16102	1321	9950	9999	16358	16358					-0.03911639739305883
HEMTKTASA	9	Unmodified	_HEMTKTASA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2315979003906	2	488.231842	974.44913	-0.079798	-3.896E-05	-0.74446	-0.00036347	-0.82426	-0.00040243	488.2315562766583	13.897	0.1165	13.897	13.84	13.957	0					4	2	2	0	0	0	0.016683	1	3498	3498		127.46	58.675	1	721020			16103	1321	9950	9999	16359	16359					-0.03911639739305883
HEMTKTASA	9	Unmodified	_HEMTKTASA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2315673828125	2	488.231842	974.44913	-0.52493	-0.00025629	-0.09567	-4.6709E-05	-0.6206	-0.000303	488.2317842669881	13.923	0.16067	13.923	13.817	13.978	0					5	3	2	0	0	0	0.0049871	1	3335	3335		158.07	92.271	1	244670			16104	1321	9950	9999	16360	16360					-0.03911639739305883
HENDTIYSL	9	Unmodified	_HENDTIYSL_					0	0	0		nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000162365|ENST00000371891|CYP4A22	nc|ENSG00000162365|Q5TCH4-2|CYP4A22	nc|ENSG00000162365|Q5TCH4-2|CYP4A22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.254150390625	2	546.253828	1090.4931	1.8786	0.0010262	-1.0029	-0.00054785	0.8757	0.00047836	546.2532563970012	35.184	0.54124	35.184	34.892	35.433	0					25	15	3	0	0	0	0.36892	1	13625	13625		44.377	1.981	1	497350			16105	5453	9951	10000	16361	16361					-0.048523320413323745
HENDTIYSL	9	Unmodified	_HENDTIYSL_					0	0	0		nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000162365|ENST00000371891|CYP4A22	nc|ENSG00000162365|Q5TCH4-2|CYP4A22	nc|ENSG00000162365|Q5TCH4-2|CYP4A22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2542724609375	2	546.253828	1090.4931	1.1252	0.00061463	-0.6282	-0.00034316	0.49697	0.00027147	546.7547191763589	34.954	0.21776	34.954	34.818	35.035	0					11	7	2	0	0	0	0.5741	1	12424	12424		24.519	1.4767	1	87234			16106	5453	9951	10000	16362	16362					-0.048523320413323745
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7647705078125	2	513.764363	1025.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.369	1	20.369	19.869	20.869	0								0	0	0	0.23111	1	5439	5439		46.457	10.01	1				16107	5808	9952	10001	16363	16363					0.0024367805817746557
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7647705078125	2	513.764363	1025.51417	4.3442	0.0022319	-4.2296	-0.002173	0.11458	5.887E-05	513.7624571606694	20.378	0.09333	20.378	20.332	20.425	0					4	2	2	0	0	0	0.36135	1	5689	5689		45.022	4.244	1	61400			16108	5808	9952	10001	16364	16364					0.0024367805817746557
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7645874023438	2	513.764363	1025.51417	-0.22611	-0.00011617	0.26219	0.0001347	0.036072	1.8532E-05	513.7647770943148	20.412	0.12098	20.412	20.326	20.447	0					5	3	2	0	0	0	0.47473	1	5705	5705		35.152	1.6364	1	55809			16109	5808	9952	10001	16365	16365					0.0024367805817746557
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7649536132812	2	513.764363	1025.51417	0.64726	0.00033254	-0.03208	-1.6481E-05	0.61519	0.00031606	513.7645186475422	20.587	0.21755	20.587	20.529	20.747	0					9	4	3	0	0	0	0.054723	1	6706	6706		93.598	11.293	1	458080			16110	5808	9952	10001	16366	16366					0.0024367805817746557
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.764404296875	2	513.764363	1025.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.476	1	20.476	19.976	20.976	0								0	0	0	0.23111	1	5764	5764		46.457	9.4283	1				16111	5808	9952	10001	16367	16367					0.0024367805817746557
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.76416015625	2	513.764363	1025.51417	0.56664	0.00029112	-0.6787	-0.00034869	-0.11206	-5.7572E-05	513.7638854990953	20.439	0.13953	20.439	20.395	20.535	0					5	3	2	0	0	0	0.31937	1	5757	5757		48.602	13.45	1	96013			16112	5808	9952	10001	16368	16368					0.0024367805817746557
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	TTC8|p.K269Rfs*38|1|0.08|ENSG00000165533|chr14:88857236-88857237|-/GGATGAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7642822265625	2	513.764363	1025.51417	0.10335	5.31E-05	-0.1527	-7.8452E-05	-0.049345	-2.5352E-05	513.7643437028826	20.6	0.16376	20.6	20.494	20.658	0					8	3	3	0	0	0	0.18416	1	6581	6581		63.534	19.417	1	953960			16113	5808	9952	10001	16369	16369					0.0024367805817746557
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.7831420898438	2	580.782753	1159.55095	1.4956	0.00086862	0.19829	0.00011516	1.6939	0.00098379	580.7828008810052	29.59	0.23833	29.59	29.523	29.761	0					17	9	3	0	0	0	0.029571	1	9347	9347		109.44	49.508	1	270120			16114	2185	9953	10002	16370	16370					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.7830200195312	2	580.782753	1159.55095	3.798	0.0022058	-2.1714	-0.0012611	1.6266	0.00094471	580.7814879388341	29.629	0.14715	29.629	29.571	29.718	0					8	5	2	0	0	0	0.11411	1	9658	9658		76.17	18.358	1	121470			16115	2185	9953	10002	16371	16371					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.782958984375	2	580.782753	1159.55095	-0.12551	-7.2893E-05	0.67995	0.00039491	0.55445	0.00032201	580.7830267318226	29.622	0.21901	29.622	29.565	29.784	0					19	8	3	0	0	0	0.02953	1	9663	9663		109.48	44.013	1	294170			16116	2185	9953	10002	16372	16372					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.7838134765625	2	580.782753	1159.55095	0.97139	0.00056416	1.0796	0.00062699	2.0509	0.0011912	580.7834241567538	29.636	0.24537	29.636	29.548	29.794	0					12	6	3	0	0	0	0.040209	1	10004	10004		99.013	22.239	1	159070			16117	2185	9953	10002	16373	16373					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.7830200195312	2	580.782753	1159.55095	0.57223	0.00033234	0.48837	0.00028364	1.0606	0.00061598	580.7830670790592	29.639	0.30888	29.639	29.539	29.848	0					18	8	3	0	0	0	0.017741	1	9996	9996		125.71	38.016	1	216680			16118	2185	9953	10002	16374	16374					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.7831420898438	2	580.782753	1159.55095	0.13044	7.5757E-05	0.32766	0.0001903	0.4581	0.00026606	580.7829471399162	29.805	0.51477	29.805	29.648	30.163	0					30	10	4	0	0	0	3.3778E-05	1	10947	10947		199.89	106.75	1	1930300			16119	2185	9953	10002	16375	16375					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.7830200195312	2	580.782753	1159.55095	1.7329	0.0010064	-0.84814	-0.00049258	0.88476	0.00051385	580.7819952757038	29.791	0.51621	29.791	29.681	30.197	0					29	10	4	0	0	0	0.0088974	1	10963	10963		143.37	60.623	1	2677200			16120	2185	9953	10002	16376	16376					-0.022440701158984666
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7543334960938	2	538.753995	1075.49344	1.5032	0.00080984	-0.75394	-0.00040619	0.74923	0.00040365	538.7533144804222	17.281	0.10515	17.281	17.203	17.308	0					5	3	2	0	0	0	0.073657	1	4094	4094		86.882	18.035	1	141620			16121	6898	9954	10003	16377	16377					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7557373046875	2	538.753995	1075.49344	4.9438	0.0026635	-2.0813	-0.0011213	2.8625	0.0015422	538.752965858712	17.315	0.10016	17.315	17.254	17.354	0					5	3	2	0	0	0	0.061298	1	4327	4327		91.265	8.5147	1	84370			16122	6898	9954	10003	16378	16378					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.75439453125	2	538.753995	1075.49344	1.3928	0.00075035	-0.58656	-0.00031601	0.80619	0.00043434	538.7536010781624	17.559	0.16763	17.559	17.5	17.668	0					7	3	3	0	0	0	0.019258	1	5246	5246		123.21	30.065	1	1166900			16123	6898	9954	10003	16379	16379					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7540283203125	2	538.753995	1075.49344	2.1993	0.0011849	-0.95505	-0.00051453	1.2443	0.00067036	538.753501406167	17.395	0.084972	17.395	17.316	17.401	0					4	2	2	0	0	0	0.076532	1	4320	4320		85.862	18.368	1	98376			16124	6898	9954	10003	16380	16380					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7542724609375	2	538.753995	1075.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.56	1	17.56	17.06	18.06	0								0	0	0	0.0016356	1	5089	5089		123.21	30.065	1				16125	6898	9954	10003	16381	16381					-0.041289123214710344
HENEYVHGNVT	11	Unmodified	_HENEYVHGNVT_					0	0	0		nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;ENST00000600284.5_1_19:50490096-50500767:-|nuORF	nc|ENSG00000105053|Q8IV63-2|VRK3	nc|ENSG00000105053|Q8IV63-2|VRK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	650.2921142578125	2	649.79164	1297.56873	-0.82447	-0.00053573	-1.6735	-0.0010874	-2.4979	-0.0016231	649.7906197882645	15.205	0.12737	15.205	15.156	15.283	0					9	4	3	0	0	0	0.62108	1	3416	3416		35.152	3.5178	1	133180			16126	2326	9955	10004	16382	16382					-0.06815354861055312
HENIVIAKM	9	Unmodified	_HENIVIAKM_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7901611328125	2	527.789327	1053.5641	1.2618	0.00066595	0.55193	0.0002913	1.8137	0.00095726	527.7895601328256	28.409	0.12559	28.409	28.368	28.493	0					8	4	2	0	0	0	0.16806	1	8884	8884		65.465	24.687	1	94031			16127	7091	9956	10005	16383	16383					0.03946089462465352
HENIVIAKM	9	Unmodified	_HENIVIAKM_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7907104492188	2	527.789327	1053.5641	2.0099	0.0010608	-0.28583	-0.00015086	1.724	0.00090992	527.788922798885	28.71	0.1824	28.71	28.575	28.758	0					6	4	2	0	0	0	0.026848	1	10167	10167		112.11	66.135	1	155540			16128	7091	9956	10005	16384	16384					0.03946089462465352
HENIVIAKM	9	Unmodified	_HENIVIAKM_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7897338867188	2	527.789327	1053.5641	2.1431	0.0011311	-1.4742	-0.00077807	0.6689	0.00035304	527.7886602016171	28.693	0.21527	28.693	28.603	28.818	0					14	5	3	0	0	0	0.13726	1	10183	10183		70.816	28.42	1	541610			16129	7091	9956	10005	16385	16385					0.03946089462465352
HENIVIAKM	9	Unmodified	_HENIVIAKM_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.78955078125	2	527.789327	1053.5641	0.92882	0.00049022	-0.42183	-0.00022264	0.50699	0.00026758	527.7891676918439	28.687	0.31298	28.687	28.581	28.894	0					11	6	3	0	0	0	0.0076184	1	10552	10552		146.79	82.578	1	487400			16130	7091	9956	10005	16386	16386					0.03946089462465352
HENIVIAKM	9	Unmodified	_HENIVIAKM_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7899780273438	2	527.789327	1053.5641	1.7575	0.00092757	-0.46459	-0.00024521	1.2929	0.00068236	527.7890974694592	28.498	0.13349	28.498	28.416	28.55	0					5	3	2	0	0	0	0.21263	1	9478	9478		60.118	8.9256	1	64328			16131	7091	9956	10005	16387	16387					0.03946089462465352
HENIVIAKM	9	Unmodified	_HENIVIAKM_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.78955078125	2	527.789327	1053.5641	0.6797	0.00035874	-0.26298	-0.0001388	0.41673	0.00021995	527.7892523214866	28.621	0.36573	28.621	28.511	28.877	0					19	7	4	0	0	0	0.037712	1	10401	10401		101.46	46.684	1	665090			16132	7091	9956	10005	16388	16388					0.03946089462465352
HENKDIIL	8	Unmodified	_HENKDIIL_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2718505859375	2	491.271824	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.645	1	38.645	38.145	39.145	0								0	0	0	1.7419	1	13028	13028		30.504	2.6214	1		+		16133	12057	9957	10006	16389	16389					0.03805169926192775
HENKGVYV	8	Unmodified	_HENKGVYV_					0	0	0		nc|ENSG00000128928|P26440-2|IVD;ENSG00000128928|ENST00000487418|IVD;nc|ENSG00000128928|P26440|IVD	nc|ENSG00000128928|P26440-2|IVD	nc|ENSG00000128928|P26440-2|IVD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.242919921875	2	473.243067	944.47158	-0.58109	-0.000275	0.40572	0.000192	-0.17538	-8.2996E-05	473.24321443862146	24.488	0.55412	24.488	24.33	24.884	0					27	11	4	0	0	0	0.59411	1	8464	8464		50.025	2.065	1	1760400			16134	3572	9958	10007	16390	16390					-0.0028767227937578355
HENLTYVQL	9	Unmodified	_HENLTYVQL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7884521484375	2	558.787838	1115.56112	1.7569	0.00098175	-1.348	-0.00075327	0.40889	0.00022848	558.7870929529639	39.623	0.261	39.623	39.539	39.8	0					17	9	3	0	0	0	0.18416	1	15575	15575		63.534	12.341	1	278420			16135	8044	9959	10008	16391	16391					0.007965376093125087
HENRTLSI	8	Unmodified	_HENRTLSI_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2591552734375	2	485.259248	968.503943	-0.010153	-4.9266E-06	-0.11697	-5.676E-05	-0.12712	-6.1686E-05	485.25908949504355	23.397	0.25534	23.397	23.298	23.553	0					12	8	2	0	0	0	0.53424	1	6766	6766		56.721	1.9447	1	159080			16136	2136	9960	10009	16392	16392					0.018431151236200094
HEPIDVQFV	9	Unmodified	_HEPIDVQFV_					0	0	0			REV__ENSG00000197620|ENST00000393985|EOLA1	REV__ENSG00000197620|ENST00000393985|EOLA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2752685546875	2	542.277106	1082.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.95	1	20.95	20.45	21.45	0								0	0	0	0.29774	1	5691	5691		35.618	0	1		+		16137	17303	9961	10010	16393	16393					0.0016915258061089844
HEQEEIFKL	9	Unmodified	_HEQEEIFKL_					0	0	0		ENST00000414066.1_1_10:38107898-38108846:-|nuORF;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000198586|Q9UKI8-2|TLK1	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.80078125	2	586.800946	1171.58734	1.1271	0.00066139	-0.61415	-0.00036038	0.51297	0.00030101	586.800448958743	36.635	0.12269	36.635	36.563	36.685	0					7	3	3	0	0	0	0.3269	1	13846	13846		47.96	2.0076	1	87086			16138	4753	9962	10011	16394	16394					0.008408067808204578
HEQEEIFKL	9	Unmodified	_HEQEEIFKL_					0	0	0		ENST00000414066.1_1_10:38107898-38108846:-|nuORF;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000198586|Q9UKI8-2|TLK1	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.80126953125	2	586.800946	1171.58734	0.10575	6.2055E-05	0.062594	3.673E-05	0.16834	9.8785E-05	586.8009981469439	36.564	0.21936	36.564	36.428	36.647	0					10	4	3	0	0	0	0.30841	1	14223	14223		49.536	10.283	1	79914			16139	4753	9962	10011	16395	16395					0.008408067808204578
HEQGLSTAL	9	Unmodified	_HEQGLSTAL_					0	0	0		ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.24542236328125	2	478.245806	954.47706	-1.4578	-0.00069717	0.31369	0.00015002	-1.1441	-0.00054715	478.24603393644776	29.219	0.19979	29.219	29.136	29.335	0					19	8	3	0	0	0	0.28897	1	9487	9487		51.193	13.381	1	225120			16140	3921	9963	10012	16396	16396					-0.0019999348758119595
HEQHTRSN	8	Unmodified	_HEQHTRSN_					0	0	0			REV__ENST00000304987.3_1_11:111595526-111595796:+|nuORF	REV__ENST00000304987.3_1_11:111595526-111595796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7317810058594	2	504.733929	1007.4533	-0.3568	-0.00018009	-3.2378	-0.0016342	-3.5946	-0.0018143	504.7319494755574	22.647	0.16604	22.647	22.538	22.705	0					6	3	2	0	0	0	0.65148	1	7577	7577		40.778	5.1599	1	308820	+		16141	18232	9964	10013	16397	16397					-0.05012414201382853
HEQKTSHQL	9	Unmodified	_HEQKTSHQL_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2815551757812	2	554.280712	1106.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.812	1	13.812	13.312	14.312	0								0	0	0	0.088368	1	3228	3228		75.043	23.708	1				16142	5663	9965	10014	16398	16398					-0.002141148189366504
HEQLSRSL	8	Unmodified	_HEQLSRSL_					0	0	0			REV__ENSG00000189350|ENST00000379558|TOGARAM2	REV__ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.25921630859375	2	485.259248	968.503943	-0.25227	-0.00012242	-0.28836	-0.00013993	-0.54063	-0.00026235	485.2589000026429	23.478	0.29792	23.478	23.387	23.685	0					13	7	2	0	0	0	0.42778	1	7181	7181		67.494	14.557	1	186210	+		16143	17220	9966	10015	16399	16399					0.018431151236200094
HEQSRIITV	9	Unmodified	_HEQSRIITV_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.8013916015625	2	541.80128	1081.58801	1.8906	0.0010243	-0.97545	-0.0005285	0.91517	0.00049584	541.8007032183766	25.294	0.27081	25.294	25.195	25.466	0					13	6	3	0	0	0	0.019258	1	8618	8618		123.21	40.968	1	744740			16144	5241	9967	10016	16400	16400					0.05047646220509705
HEQSRIITV	9	Unmodified	_HEQSRIITV_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.8021850585938	2	541.80128	1081.58801	1.2918	0.00069988	0.32869	0.00017809	1.6204	0.00087796	541.8015501851332	25.265	0.22068	25.265	25.155	25.375	0					6	4	2	0	0	0	0.085655	1	8936	8936		82.75	13.123	1	231170			16145	5241	9967	10016	16401	16401					0.05047646220509705
HEQSRIITV	9	Unmodified	_HEQSRIITV_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.8029174804688	2	541.80128	1081.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.088	1	25.088	24.588	25.588	0								0	0	0	0.15687	1	7924	7924		58.23	6.8945	1				16146	5241	9967	10016	16402	16402					0.05047646220509705
HEQSRIITV	9	Unmodified	_HEQSRIITV_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.8016357421875	2	541.80128	1081.58801	1.0547	0.00057143	-0.64541	-0.00034968	0.40928	0.00022175	541.8011075099129	25.111	0.14355	25.111	24.999	25.142	0					6	3	2	0	0	0	0.40353	1	7936	7936		41.427	2.1738	1	47935			16147	5241	9967	10016	16403	16403					0.05047646220509705
HEQSRIITV	9	Unmodified	_HEQSRIITV_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.8016967773438	2	541.80128	1081.58801	0.63684	0.00034504	0.63822	0.00034579	1.2751	0.00069083	541.801507799177	25.17	0.37039	25.17	25.11	25.481	0					15	7	4	0	0	0	0.047855	1	8790	8790		96.034	26.406	1	550640			16148	5241	9967	10016	16404	16404					0.05047646220509705
HEQSRIITV	9	Unmodified	_HEQSRIITV_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.8019409179688	2	541.80128	1081.58801	2.0514	0.0011114	-1.2681	-0.00068708	0.78325	0.00042437	541.8005348609281	25.204	0.32085	25.204	25.093	25.414	0					13	6	3	0	0	0	0.48623	1	8809	8809		33.922	2.3918	1	870310			16149	5241	9967	10016	16405	16405					0.05047646220509705
HEQVVERL	8	Unmodified	_HEQVVERL_					0	0	0		nc|ENSG00000161888|Q8NBT2-2|SPC24;ENSG00000161888|ENST00000592540|SPC24	nc|ENSG00000161888|Q8NBT2-2|SPC24	nc|ENSG00000161888|Q8NBT2-2|SPC24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2749938964844	2	505.274898	1008.53524	0.70137	0.00035439	-0.37166	-0.00018779	0.32972	0.0001666	505.27483354941745	23.285	0.10686	23.285	23.234	23.34	0					4	2	2	0	0	0	0.25143	1	7698	7698		98.629	16.389	1	81895			16150	5428	9968	10017	16406	16406					0.03131688157714052
HEQVVERL	8	Unmodified	_HEQVVERL_					0	0	0		nc|ENSG00000161888|Q8NBT2-2|SPC24;ENSG00000161888|ENST00000592540|SPC24	nc|ENSG00000161888|Q8NBT2-2|SPC24	nc|ENSG00000161888|Q8NBT2-2|SPC24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2750549316406	2	505.274898	1008.53524	0.1198	6.0533E-05	-0.38543	-0.00019475	-0.26562	-0.00013421	505.27449272418204	23.221	0.16744	23.221	23.111	23.279	0					7	3	3	0	0	0	0.28299	1	7982	7982		88.177	16.299	1	195640			16151	5428	9968	10017	16407	16407					0.03131688157714052
HEQVVVQL	8	Unmodified	_HEQVVVQL_					0	0	0		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40;ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant;ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2658996582031	2	476.266542	950.51853	0.35291	0.00016808	-0.85326	-0.00040638	-0.50035	-0.0002383	476.2662263221515	34.363	0.1305	34.363	34.295	34.426	0					6	3	2	0	0	0	0.65148	1	12795	12795		40.778	1.972	1	179120			16152	218	9969	10018	16408	16408					0.04129187271757928
HERAKSTVM	9	Unmodified	_HERAKSTVM_					0	0	0		ENSG00000095932|ENST00000215531|SMIM24	ENSG00000095932|ENST00000215531|SMIM24	ENSG00000095932|ENST00000215531|SMIM24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7743530273438	2	529.774208	1057.53386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.748	1	14.748	14.248	15.248	0								0	0	0	0.1633	1	3738	3738		56.721	21.103	1				16153	1910	9970	10019	16409	16409					0.007397307973178613
HERAKSTVM	9	Unmodified	_HERAKSTVM_					0	0	0		ENSG00000095932|ENST00000215531|SMIM24	ENSG00000095932|ENST00000215531|SMIM24	ENSG00000095932|ENST00000215531|SMIM24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7747802734375	2	529.774208	1057.53386	1.6332	0.00086523	-1.2842	-0.00068033	0.34901	0.0001849	529.7738922141139	14.703	0.21673	14.703	14.643	14.86	0					8	4	3	0	0	0	0.12834	1	3731	3731		72.879	17.375	1	374090			16154	1910	9970	10019	16410	16410					0.007397307973178613
HERCVSRNI	9	Unmodified	_HERCVSRNI_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;DGKG|p.M663Ifs*17|1|0.04|ENSG00000058866|chr3:186188308-186188308|C/-|frameshift_variant;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7831420898438	2	557.282731	1112.55091	-0.9179	-0.00051153	-0.72756	-0.00040545	-1.6455	-0.00091698	557.7836396751337	13.984	0.078778	13.984	13.947	14.026	0					4	2	2	0	0	0	0.3269	1	2890	2890		40.778	5.1599	1	126430			16155	777	9971	10020	16411	16411					-0.0008634859689209406
HERDAFDTL	9	Unmodified	_HERDAFDTL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.259765625	2	552.259445	1102.50434	1.8248	0.0010078	-0.93661	-0.00051725	0.88824	0.00049054	552.2589349940695	30.746	0.43417	30.746	30.658	31.092	0					21	10	3	0	0	0	0.27123	1	11130	11130		53.089	7.1167	1	408070			16156	7487	9972	10021	16412	16412					-0.04281509947190898
HERDAGVVC	9	Unmodified	_HERDAGVVC_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000592255.1_1_17:76969205-76970848:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2296142578125	2	493.229633	984.444714	-0.60707	-0.00029943	0.34954	0.0001724	-0.25753	-0.00012702	493.22974794872056	18.629	0.2139	18.629	18.522	18.736	0					6	4	2	0	0	0	0.55379	1	5627	5627		26.693	0	1	174850			16157	2545	9973	10022	16413	16413					-0.048131041622241355
HERGSLASL	9	Unmodified	_HERGSLASL_					0	0	0		nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;ENSG00000198561|ENST00000399050|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.25921630859375	2	485.259248	968.503943	0.65693	0.00031878	-0.6021	-0.00029217	0.054836	2.6609E-05	485.25866590137986	23.696	0.32221	23.696	23.565	23.887	0					18	7	3	0	0	0	0.035062	1	7890	7890		104.06	10.861	1	1711400			16158	711	9974	10023	16414	16414					0.01843115123597272
HERGSLASL	9	Unmodified	_HERGSLASL_					0	0	0		nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;ENSG00000198561|ENST00000399050|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2587890625	2	485.259248	968.503943	0.84342	0.00040928	-1.0341	-0.0005018	-0.19066	-9.2522E-05	485.25848788249743	23.62	0.91132	23.62	23.418	24.33	0					36	18	5	0	0	0	0.016683	1	8047	8047		127.46	34.266	1	1876500			16159	711	9974	10023	16415	16415					0.01843115123597272
HERLGQGLQ	9	Unmodified	_HERLGQGLQ_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-2|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.279296875	2	519.277972	1036.54139	1.6212	0.00084184	1.0652	0.00055311	2.6863	0.001395	519.278572166816	40.276	0.30474	40.276	40.168	40.473	0					22	12	2	0	0	0	0.48389	1	15852	15852		34.173	1.3601	1	382890	+		16160	16215	9975	10024	16416	16416					0.024582063892466977
HERNLQSDVL	10	Unmodified	_HERNLQSDVL_					0	0	0		DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.8115844726562	2	605.812376	1209.6102	0.15063	9.1256E-05	-0.98871	-0.00059897	-0.83808	-0.00050772	605.8119233719257	26.301	0.11821	26.301	26.243	26.361	0					6	3	2	0	0	0	0.62149	1	7994	7994		31.634	0.10446	1	45506			16161	784	9976	10025	16417	16417					0.013778258982711122
HERSGNREAQ	10	Unmodified	_HERSGNREAQ_					0	0	0		nc|ENSG00000268447|Q16385-2|SSX2	nc|ENSG00000268447|Q16385-2|SSX2	nc|ENSG00000268447|Q16385-2|SSX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.2811889648438	2	592.281774	1182.549	1.5264	0.00090403	-2.436	-0.0014428	-0.90965	-0.00053877	592.2795379395982	38.653	0.23436	38.653	38.532	38.766	0					14	8	3	0	0	0	0.56931	1	15182	15182		37.812	0	1	89400			16162	11800	9977	10026	16418	16418					-0.034976860811411825
HESAAHAIV	9	Unmodified	_HESAAHAIV_					0	0	0		ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.74041748046875	2	467.740691	933.466829	0.31624	0.00014792	-0.75865	-0.00035485	-0.44241	-0.00020693	467.74032853433687	19.604	0.19479	19.604	19.453	19.647	0					5	4	2	0	0	0	0.50461	1	5951	5951		31.955	0	1	81469			16163	2951;4994	9978	10027	16419	16419					-0.0025655642216406704
HESAESMLSH	10	Unmodified	_HESAESMLSH_					0	0	0			REV__PKDREJ|p.P1468S|1|0.41|ENSG00000130943|chr22:46258921-46258921|G/A|missense_variant	REV__PKDREJ|p.P1468S|1|0.41|ENSG00000130943|chr22:46258921-46258921|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.2432861328125	2	564.242938	1126.47132	0.90871	0.00051273	-0.14566	-8.219E-05	0.76305	0.00043054	564.2428734842529	20.058	0.66462	20.058	19.944	20.609	0					24	13	3	0	0	0	0.46215	1	6318	6318		49.442	20.292	1	162320	+		16164	21379	9979	10028	16420	16420					-0.08685460061542472
HESAVTGLSL	10	Unmodified	_HESAVTGLSL_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2668151855469	2	507.266739	1012.51892	-0.089205	-4.5251E-05	0.1171	5.9403E-05	0.027899	1.4152E-05	507.26671340416846	36.448	0.28558	36.448	36.353	36.639	0					37	14	4	0	0	0	0.43008	1	11941	11941		52.937	3.4007	1	705590			16165	2613	9980	10029	16421	16421					0.013165622009523759
HESAVTGLSL	10	Unmodified	_HESAVTGLSL_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2669982910156	2	507.266739	1012.51892	-0.033323	-1.6904E-05	-0.042704	-2.1662E-05	-0.076027	-3.8566E-05	507.2666535373331	36.771	0.44419	36.771	36.625	37.069	0					34	12	4	0	0	0	0.19797	1	13869	13869		79.713	5.4575	1	3157300			16166	2613	9980	10029	16422	16422					0.013165622009523759
HESAVTGLSL	10	Unmodified	_HESAVTGLSL_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2666931152344	2	507.266739	1012.51892	-0.63982	-0.00032456	1.1027	0.00055937	0.4629	0.00023481	507.2672236179935	36.496	0.35505	36.496	36.396	36.751	0					49	19	4	0	0	0	0.26198	1	12353	12353		71.877	15.156	1	545520			16167	2613	9980	10029	16423	16423					0.013165622009523759
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2704162597656	2	499.269281	996.52401	1.5697	0.0007837	-1.7307	-0.00086409	-0.16101	-8.039E-05	499.26898988241624	21.665	0.11686	21.665	21.589	21.706	0					6	3	2	0	0	0	0.020674	1	5995	5995		116.9	34.599	1	63672			16168	5777	9981	10030	16424	16424					0.025608660635725755
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.26953125	2	499.269281	996.52401	0.29022	0.0001449	-0.31172	-0.00015563	-0.021502	-1.0735E-05	499.26909397578464	21.651	0.14501	21.651	21.579	21.724	0					7	4	2	0	0	0	0.070005	1	6004	6004		71.877	24.22	1	164060			16169	5777	9981	10030	16425	16425					0.025608660635725755
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2695617675781	2	499.269281	996.52401	0.57752	0.00028834	-0.50475	-0.00025201	0.072767	3.633E-05	499.26900221033225	22.009	0.17377	22.009	21.932	22.106	0					11	4	3	0	0	0	0.035106	1	7074	7074		98.629	36.522	1	647110			16170	5777	9981	10030	16426	16426					0.025608660635725755
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2694396972656	2	499.269281	996.52401	0.67507	0.00033704	-0.64759	-0.00032332	0.027486	1.3723E-05	499.26890753324693	21.993	0.17278	21.993	21.96	22.132	0					9	4	3	0	0	0	0.04067	1	7085	7085		82.241	7.9855	1	736130			16171	5777	9981	10030	16427	16427					0.025608660635725755
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.26910400390625	2	499.269281	996.52401	-0.012829	-6.4052E-06	-0.63079	-0.00031494	-0.64362	-0.00032134	499.2690506084868	21.882	0.21324	21.882	21.776	21.989	0					10	4	3	0	0	0	0.021015	1	7333	7333		104.06	45.827	1	1268500			16172	5777	9981	10030	16428	16428					0.025608660635725755
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.26898193359375	2	499.269281	996.52401	-0.35043	-0.00017496	-0.53823	-0.00026872	-0.88866	-0.00044368	499.269420389288	21.777	0.15157	21.777	21.685	21.837	0					7	3	3	0	0	0	0.12278	1	6366	6366		67.494	29.682	1	87135			16173	5777	9981	10030	16429	16429					0.025608660635725755
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2691955566406	2	499.269281	996.52401	-0.73054	-0.00036474	0.30955	0.00015455	-0.42099	-0.00021019	499.26950403231416	21.895	0.26494	21.895	21.789	22.054	0					13	5	3	0	0	0	0.054723	1	7211	7211		77.318	29.66	1	1671900			16174	5777	9981	10030	16430	16430					0.025608660635725755
HESENDLFH	9	Unmodified	_HESENDLFH_					0	0	0		nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B	nc|ENSG00000180777|Q9BXX2|ANKRD30B	nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.243408203125	2	564.241252	1126.46795	0.87075	0.00049131	3.115	0.0017576	3.9858	0.0022489	564.2427083504592	19.88	0.23413	19.88	19.827	20.062	0					7	5	2	0	0	0	0.5741	1	5501	5501		24.519	2.5593	1	46179			16175	6816	9982	10031	16431	16431					-0.09022386843889763
HESGASIKI	9	Unmodified	_HESGASIKI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R414C|1|0.56|ENSG00000165119|chr9:83970283-83970283|G/A|missense_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2562255859375	2	471.256174	940.497795	0.89377	0.00042119	-0.91658	-0.00043194	-0.022806	-1.0747E-05	471.2556187177576	22.728	0.26819	22.728	22.638	22.907	0					16	8	3	0	0	0	0.019882	1	6466	6466		122.18	36.817	1	307930			16176	5762	9983	10032	16432	16432					0.025165968920987325
HESGASIKI	9	Unmodified	_HESGASIKI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R414C|1|0.56|ENSG00000165119|chr9:83970283-83970283|G/A|missense_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2556457519531	2	471.256174	940.497795	-0.1242	-5.8531E-05	-0.79492	-0.00037461	-0.91912	-0.00043314	471.25566466741043	22.969	0.56666	22.969	22.862	23.429	0					26	11	4	0	0	0	0.01873	1	7859	7859		124.08	27.89	1	3562500			16177	5762	9983	10032	16433	16433					0.025165968920987325
HESGASIKI	9	Unmodified	_HESGASIKI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R414C|1|0.56|ENSG00000165119|chr9:83970283-83970283|G/A|missense_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2540588378906	2	471.256174	940.497795	-0.19293	-9.0921E-05	-0.92402	-0.00043545	-1.117	-0.00052637	471.25565406076896	22.846	0.18893	22.846	22.75	22.939	0					9	4	3	0	0	0	0.016683	1	6865	6865		127.46	42.102	1	462370			16178	5762	9983	10032	16434	16434					0.025165968920987325
HESGASIKI	9	Unmodified	_HESGASIKI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R414C|1|0.56|ENSG00000165119|chr9:83970283-83970283|G/A|missense_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.25506591796875	2	471.256174	940.497795	-0.55238	-0.00026031	-0.15138	-7.1339E-05	-0.70376	-0.00033165	471.25599043180756	22.999	0.61215	22.999	22.839	23.451	0					20	12	4	0	0	0	0.026538	1	7717	7717		112.41	35.093	1	5093900			16179	5762	9983	10032	16435	16435					0.025165968920987325
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7407531738281	2	467.740691	933.466829	0.31854	0.000149	-0.91437	-0.00042769	-0.59583	-0.00027869	467.7400361781641	19.09	0.22156	19.09	18.977	19.198	0					7	5	2	0	0	0	0.35045	1	5677	5677		45.952	12.436	1	487460			16180	4106	9984	10033	16436	16436					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.74078369140625	2	467.740691	933.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.76	1	18.76	18.26	19.26	0								0	0	0	0.082189	1	4959	4959		76.847	25.511	1				16181	4106	9984	10033	16437	16437					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.74114990234375	2	467.740691	933.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.802	1	18.802	18.302	19.302	0								0	0	0	0.22106	1	4980	4980		47.916	9.1095	1				16182	4106	9984	10033	16438	16438					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.74053955078125	2	467.740691	933.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.973	1	18.973	18.473	19.473	0								0	0	0	0.082189	1	5781	5781		76.847	13.54	1				16183	4106	9984	10033	16439	16439					-0.0025655642216406704
HESLRKLEA	9	Unmodified	_HESLRKLEA_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.80224609375	2	541.80128	1081.58801	1.7453	0.00094562	1.0014	0.00054259	2.7468	0.0014882	541.8017234871942	24.991	0.11184	24.991	24.92	25.032	0					6	3	2	0	0	0	0.42902	1	7469	7469		39.253	4.0521	1	85604	+		16184	15827	9985	10034	16440	16440					0.05047646220509705
HESLSHEL	8	Unmodified	_HESLSHEL_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2294921875	2	476.230156	950.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.617	1	22.617	22.117	23.117	0								0	0	0	1.7419	1	7681	7681		47.916	7.343	1				16185	3207	9986	10035	16441	16441					-0.031445665216665475
HESPAVKL	8	Unmodified	_HESPAVKL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7479248046875	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.432	1	22.432	21.932	22.932	0								0	0	0	1.7419	1	7286	7286		66.429	15.094	1				16186	1925	9987	10036	16442	16442					0.03685515725987898
HESPAVKL	8	Unmodified	_HESPAVKL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.7474670410156	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.353	1	22.353	21.853	22.853	0								0	0	0	1.7419	1	7554	7554		68.787	13.283	1				16187	1925	9987	10036	16443	16443					0.03685515725987898
HESPAVKL	8	Unmodified	_HESPAVKL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.7476501464844	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.325	1	22.325	21.825	22.825	0								0	0	0	1.7419	1	7408	7408		74.255	18.751	1				16188	1925	9987	10036	16444	16444					0.03685515725987898
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2889404296875	2	549.288537	1096.56252	1.593	0.00087502	-0.61101	-0.00033562	0.98199	0.00053939	549.2880751126797	19.098	0.27916	19.098	19.031	19.31	0					11	8	2	0	0	0	0.0025054	1	4885	4885		171.53	83.835	1	636610			16189	2302;3114;4911	9988	10037	16445	16445					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2892456054688	2	549.288537	1096.56252	1.8409	0.0010112	-1.0612	-0.00058293	0.77963	0.00042824	549.2879068575368	19.444	0.52995	19.444	19.356	19.886	0					23	12	4	0	0	0	0.003936	1	5859	5859		163.15	85.833	1	5733300			16190	2302;3114;4911	9988	10037	16446	16446					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.290283203125	2	549.288537	1096.56252	4.6569	0.002558	-3.5984	-0.0019766	1.0585	0.00058142	549.28659842239	19.131	0.13837	19.131	19.065	19.203	0					7	4	2	0	0	0	0.056004	1	5121	5121		93.143	39.792	1	107300			16191	2302;3114;4911	9988	10037	16447	16447					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2891845703125	2	549.288537	1096.56252	0.36475	0.00020035	1.1844	0.00065055	1.5491	0.00085091	549.2892053601911	19.124	0.16651	19.124	19.026	19.192	0					10	5	3	0	0	0	0.063171	1	5128	5128		90.601	35.825	1	209350			16192	2302;3114;4911	9988	10037	16448	16448					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2891845703125	2	549.288537	1096.56252	0.53942	0.0002963	0.5858	0.00032178	1.1252	0.00061807	549.2888083905658	19.339	0.21449	19.339	19.281	19.495	0					7	4	3	0	0	0	0.011389	1	6105	6105		138.06	55.757	1	956180			16193	2302;3114;4911	9988	10037	16449	16449					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2901611328125	2	549.288537	1096.56252	1.8916	0.001039	-0.99074	-0.0005442	0.90086	0.00049483	549.2880000101629	19.213	0.22414	19.213	19.121	19.345	0					9	5	2	0	0	0	0.012936	1	5164	5164		134.77	63.47	1	517810			16194	2302;3114;4911	9988	10037	16450	16450					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2890625	2	549.288537	1096.56252	1.1578	0.00063599	-0.30491	-0.00016748	0.85293	0.0004685	549.2884787628111	19.196	0.26221	19.196	19.107	19.369	0					13	6	3	0	0	0	0.015496	1	5174	5174		129.42	52.647	1	455650			16195	2302;3114;4911	9988	10037	16451	16451					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	nc|ENSG00000113575|P67775-2|PPP2CA;nc|ENSG00000119414|O00743-2|PPP6C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2894897460938	2	549.288537	1096.56252	0.5257	0.00028876	0.77952	0.00042818	1.3052	0.00071694	549.2889916995994	19.352	0.41144	19.352	19.245	19.656	0					17	8	4	0	0	0	0.00072198	1	5951	5951		185.72	91.712	1	5901900			16196	2302;3114;4911	9988	10037	16452	16452					0.01810171698070917
HESSSHHDL	9	Unmodified	_HESSSHHDL_					0	0	0		ENST00000606261.1_1_7:26224125-26225400:+|nuORF;NFE2L3|p.G654Rfs*2|1|0.18|ENSG00000050344|chr7:26185655-26185656|-/A|frameshift_variant;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000606261.1_1_7:26224125-26225400:+|nuORF	ENST00000606261.1_1_7:26224125-26225400:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7261352539062	2	524.725769	1047.43699	1.7803	0.00093414	-1.1066	-0.00058064	0.67369	0.0003535	524.7253121112385	13.644	0.15726	13.644	13.591	13.748	0					5	3	2	0	0	0	0.14603	1	3380	3380		68.787	6.6794	1	310460			16197	1246	9989	10038	16453	16453					-0.08483540158135838
HESVSKIST	9	Unmodified	_HESVSKIST_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.258544921875	2	494.258914	986.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.13	1	18.13	17.63	18.63	0								0	0	0	0.24544	1	5246	5246		44.377	17.684	1				16198	1919	9990	10039	16454	16454					0.009482756839133799
HETDFNGQKL	10	Unmodified	_HETDFNGQKL_					0	0	0		nc|ENSG00000117602|Q9UKA8-3|RCAN3;nc|ENSG00000117602|Q9UKA8-2|RCAN3;ENSG00000117602|ENST00000374395|RCAN3	nc|ENSG00000117602|Q9UKA8-3|RCAN3	nc|ENSG00000117602|Q9UKA8-3|RCAN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.7860107421875	2	594.785827	1187.5571	-0.54934	-0.00032674	1.005	0.00059775	0.45565	0.00027101	594.7864655144914	24.317	0.13316	24.317	24.249	24.382	0					7	4	2	0	0	0	0.27065	1	7436	7436		70.816	24.844	1	100910			16199	3048	9991	10040	16455	16455					-0.029175518843885584
HETDFNGQKL	10	Unmodified	_HETDFNGQKL_					0	0	0		nc|ENSG00000117602|Q9UKA8-3|RCAN3;nc|ENSG00000117602|Q9UKA8-2|RCAN3;ENSG00000117602|ENST00000374395|RCAN3	nc|ENSG00000117602|Q9UKA8-3|RCAN3	nc|ENSG00000117602|Q9UKA8-3|RCAN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.7864990234375	2	594.785827	1187.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.377	1	24.377	23.877	24.877	0								0	0	0	0.23484	1	7592	7592		59.931	10.395	1				16200	3048	9991	10040	16456	16456					-0.029175518843885584
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7787475585938	2	520.777805	1039.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.797	1	13.797	13.297	14.297	0								0	0	0	1.7419	1	2747	2747		74.255	18.751	1				16201	4342	9992	10041	16457	16457					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	347.5207824707031	3	347.520962	1039.54106	0.18405	6.3962E-05	-0.50095	-0.00017409	-0.3169	-0.00011013	347.52073584296295	13.784	0.08709	13.784	13.745	13.832	0					5	3	2	0	0	0	0.65276	1	2739	2739		51.335	19.701	1	88682			16202	4342	9992	10041	16458	16458					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7778930664062	2	520.777805	1039.54106	1.4632	0.000762	-1.125	-0.00058587	0.3382	0.00017613	520.7771861633094	14.068	0.13937	14.068	14.016	14.156	0					7	3	3	0	0	0	0.27635	1	3356	3356		90.37	8.1293	1	924960			16203	4342	9992	10041	16459	16459					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.52081298828125	3	347.520962	1039.54106	0.50063	0.00017398	-0.92226	-0.0003205	-0.42163	-0.00014653	347.5206626249439	14.055	0.49114	14.055	14.003	14.494	0					19	12	3	0	0	0	0.54629	1	3351	3351		66.429	38.785	1	944490			16204	4342	9992	10041	16460	16460					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7785034179688	2	520.777805	1039.54106	0.29518	0.00015372	0.70011	0.0003646	0.99529	0.00051832	520.7782345717847	13.809	0.11705	13.809	13.767	13.884	0					11	5	3	0	0	0	0.25376	1	2890	2890		138.83	27.177	1	214070			16205	4342	9992	10041	16461	16461					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.77783203125	2	520.777805	1039.54106	1.707	0.00088899	-1.3851	-0.00072133	0.32194	0.00016766	520.7771064509855	14.033	0.54061	14.033	13.923	14.463	0					22	11	3	0	0	0	0.23367	1	3561	3561		120.62	12.533	1	2823800			16206	4342	9992	10041	16462	16462					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.5208740234375	3	347.520962	1039.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.034	1	14.034	13.534	14.534	0								0	0	0	1.7419	1	3553	3553		66.429	25.651	1				16207	4342	9992	10041	16463	16463					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.778076171875	2	520.777805	1039.54106	-1.3387	-0.00069714	1.3885	0.00072313	0.04989	2.5982E-05	520.7786663050107	13.874	0.1451	13.874	13.808	13.953	0					12	7	3	0	0	0	0.29286	1	2839	2839		84.916	5.4645	1	179020			16208	4342	9992	10041	16464	16464					0.02286786669378671
HETEQKRL	8	Unmodified	_HETEQKRL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	347.5206298828125	3	347.520962	1039.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.887	1	13.887	13.387	14.387	0								0	0	0	1.7419	1	2850	2850		42.396	24.563	1				16209	4342	9992	10041	16465	16465					0.02286786669378671
HETGIAISV	9	Unmodified	_HETGIAISV_					0	0	0		ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7509460449219	2	463.750724	925.486896	0.099035	4.5927E-05	-0.093179	-4.3212E-05	0.0058551	2.7153E-06	463.7506130992822	34.805	0.16355	34.805	34.745	34.909	0					12	7	2	0	0	0	0.39215	1	11397	11397		42.396	5.237	1	81382			16210	1901	9993	10042	16466	16466					0.021171945177911766
HETGIAISV	9	Unmodified	_HETGIAISV_					0	0	0		ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.750244140625	2	463.750724	925.486896	-0.47945	-0.00022235	-0.17484	-8.1083E-05	-0.65429	-0.00030343	463.7506475171865	35.039	0.36592	35.039	34.93	35.296	0					12	7	3	0	0	0	0.2873	1	13499	13499		51.335	0	1	615710			16211	1901	9993	10042	16467	16467					0.021171945177911766
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.27728271484375	2	500.277106	998.53966	0.36384	0.00018202	-0.39834	-0.00019928	-0.034502	-1.726E-05	500.2769331837039	23.445	0.18151	23.445	23.372	23.553	0					10	6	2	0	0	0	0.020674	1	6783	6783		120.87	54.439	1	330690			16212	1516	9994	10043	16468	16468					0.04033152580609567
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.27728271484375	2	500.277106	998.53966	-1.0086	-0.00050456	1.9986	0.00099986	0.99005	0.0004953	500.2777128926159	23.504	0.17926	23.504	23.395	23.574	0					15	6	3	0	0	0	0.11898	1	7073	7073		75.043	8.614	1	186500			16213	1516	9994	10043	16469	16469					0.04033152580609567
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.27679443359375	2	500.277106	998.53966	0.0074796	3.7419E-06	-0.0245	-1.2257E-05	-0.017021	-8.5151E-06	500.27707466443223	23.72	0.31951	23.72	23.612	23.931	0					11	6	2	0	0	0	0.021961	1	8201	8201		118.74	49.956	1	1706900			16214	1516	9994	10043	16470	16470					0.04033152580609567
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2769470214844	2	500.277106	998.53966	0.90369	0.0004521	-0.4553	-0.00022778	0.44839	0.00022432	500.2765416460459	23.688	0.56609	23.688	23.496	24.062	0					22	11	4	0	0	0	0.035062	1	8214	8214		104.06	40.751	1	1399100			16215	1516	9994	10043	16471	16471					0.04033152580609567
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2772521972656	2	500.277106	998.53966	-0.44235	-0.0002213	0.029512	1.4764E-05	-0.41284	-0.00020654	500.2771682110182	23.546	0.21981	23.546	23.446	23.665	0					10	5	3	0	0	0	0.037569	1	7210	7210		101.6	40.629	1	125750			16216	1516	9994	10043	16472	16472					0.04033152580609567
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2768249511719	2	500.277106	998.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.545	1	23.545	23.045	24.045	0								0	0	0	0.00097936	1	7204	7204		127.46	57.834	1				16217	1516	9994	10043	16473	16473					0.04033152580609567
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.27728271484375	2	500.277106	998.53966	-0.66523	-0.0003328	0.82176	0.00041111	0.15652	7.8305E-05	500.2774981281819	23.692	0.31239	23.692	23.585	23.897	0					11	6	2	0	0	0	0.0071053	1	8079	8079		148.99	72.213	1	2283600			16218	1516	9994	10043	16474	16474					0.04033152580609567
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2774353027344	2	500.277106	998.53966	1.092	0.00054629	-0.51768	-0.00025899	0.57429	0.0002873	500.2765543902017	23.712	0.41269	23.712	23.518	23.931	0					19	8	4	0	0	0	0.010494	1	8073	8073		139.97	63.196	1	1612500			16219	1516	9994	10043	16475	16475					0.04033152580609567
HETIRVAVC	9	Unmodified	_HETIRVAVC_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2721557617188	2	514.271301	1026.52805	1.5429	0.00079346	-0.32857	-0.00016897	1.2143	0.00062449	514.2713409386663	27.106	0.17534	27.106	27.021	27.196	0					7	4	2	0	0	0	0.1115	1	9421	9421		76.774	13.468	1	58873			16220	5301	9995	10044	16476	16476					0.01584632285630505
HETIRVAVC	9	Unmodified	_HETIRVAVC_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2710571289062	2	514.271301	1026.52805	0.70661	0.00036339	-1.169	-0.0006012	-0.46243	-0.00023781	514.7725927597799	27.08	0.2086	27.08	26.978	27.186	0					10	4	3	0	0	0	0.17854	1	9760	9760		64.207	12.872	1	160200			16221	5301	9995	10044	16477	16477					0.01584632285630505
HETKGSVAV	9	Unmodified	_HETKGSVAV_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2481689453125	2	464.248349	926.482145	0.72862	0.00033826	-1.2872	-0.00059758	-0.55858	-0.00025932	464.2477402500295	16.442	0.26643	16.442	16.333	16.6	0					7	5	2	0	0	0	0.098791	1	4565	4565		79.713	26.361	1	540140			16222	3294	9996	10045	16478	16478					0.015963103750436858
HETRLVEI	8	Unmodified	_HETRLVEI_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7772216796875	2	498.777274	995.539994	-0.019234	-9.5934E-06	-0.37505	-0.00018707	-0.39428	-0.00019666	498.7771355985409	28.491	0.41359	28.491	28.381	28.795	0					20	8	3	0	0	0	0.24328	1	10454	10454		113.41	11.811	1	727610			16223	5385	9997	10046	16479	16479					0.04204572300466225
HETRLVEI	8	Unmodified	_HETRLVEI_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7767028808594	2	498.777274	995.539994	-0.73743	-0.00036781	-1.5023	-0.00074933	-2.2398	-0.0011171	498.77648162409076	28.469	0.51739	28.469	28.359	28.877	0					22	10	3	0	0	0	0.28444	1	10326	10326		87.696	5.4559	1	1546100			16224	5385	9997	10046	16480	16480					0.04204572300466225
HETRLVEV	8	Unmodified	_HETRLVEV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.76934814453125	2	491.769448	981.524344	0.79988	0.00039336	-0.24842	-0.00012217	0.55146	0.00027119	491.768944257095	24.905	0.16613	24.905	24.825	24.992	0					13	4	4	0	0	0	0.38291	1	8457	8457		62.107	35.311	1	412880			16225	2798	9998	10047	16481	16481					0.03284285783411178
HETRLVEV	8	Unmodified	_HETRLVEV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7691955566406	2	491.769448	981.524344	-0.060918	-2.9958E-05	0.10203	5.0176E-05	0.041113	2.0218E-05	491.769307911198	24.865	0.16164	24.865	24.762	24.924	0					6	3	2	0	0	0	0.4668	1	8764	8764		52.937	15.778	1	329080			16226	2798	9998	10047	16482	16482					0.03284285783411178
HETRLVEV	8	Unmodified	_HETRLVEV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7690734863281	2	491.769448	981.524344	-0.57387	-0.00028221	-0.037298	-1.8342E-05	-0.61117	-0.00030055	491.7693995947795	24.829	0.20663	24.829	24.723	24.929	0					7	4	2	0	0	0	0.35549	1	8626	8626		65.465	31.293	1	420630			16227	2798	9998	10047	16483	16483					0.03284285783411178
HETRVLAV	8	Unmodified	_HETRVLAV_					0	0	0			REV__ENSG00000133265|ENST00000433386|HSPBP1	REV__ENSG00000133265|ENST00000433386|HSPBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.76617431640625	2	462.766709	923.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.539	1	25.539	25.039	26.039	0								0	0	0	1.7419	1	8739	8739		47.916	0	1		+		16228	14703	9999	10048	16484	16484					0.054046069916125816
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7952270507812	2	536.794609	1071.57467	1.3577	0.0007288	-1.2668	-0.00068	0.090913	4.8802E-05	536.7943028950417	19.302	0.21978	19.302	19.222	19.442	0					12	6	3	0	0	0	0.15163	1	4978	4978		67.494	18.052	1	253200			16229	6760	10000	10049	16485	16485					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.794921875	2	536.794609	1071.57467	2.1249	0.0011407	-2.0893	-0.0011215	0.035683	1.9154E-05	536.7937528622871	19.624	0.47901	19.624	19.356	19.835	0					26	11	5	0	0	0	0.0080613	1	5966	5966		145.16	57.401	1	2070800			16230	6760	10000	10049	16486	16486					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.1988220214844	3	358.198831	1071.57467	0.48534	0.00017385	-0.96005	-0.00034389	-0.47471	-0.00017004	358.1986298964278	19.65	0.39948	19.65	19.469	19.869	0					24	9	5	0	0	0	0.2873	1	5957	5957		67.494	23.843	1	1935100			16231	6760	10000	10049	16487	16487					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7949829101562	2	536.794609	1071.57467	-0.41793	-0.00022434	0.94331	0.00050636	0.52538	0.00028202	536.7952111868062	19.317	0.14756	19.317	19.243	19.39	0					10	4	3	0	0	0	0.10506	1	5220	5220		78.264	52.814	1	281980			16232	6760	10000	10049	16488	16488					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7951049804688	2	536.794609	1071.57467	1.2873	0.000691	-0.44966	-0.00024137	0.83761	0.00044963	536.7942567456437	19.535	0.2631	19.535	19.43	19.693	0					10	5	3	0	0	0	0.1424	1	6203	6203		69.628	27.231	1	410880			16233	6760	10000	10049	16489	16489					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7947387695312	2	536.794609	1071.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.402	1	19.402	18.902	19.902	0								0	0	0	0.04624	1	5261	5261		87.696	30.975	1				16234	6760	10000	10049	16490	16490					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.79443359375	2	536.794609	1071.57467	1.0418	0.00055925	-1.5087	-0.00080985	-0.46685	-0.0002506	536.7941155758526	19.376	0.14406	19.376	19.318	19.463	0					10	3	4	0	0	0	0.056004	1	5256	5256		93.143	43.119	1	232990			16235	6760	10000	10049	16491	16491					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.1991271972656	3	358.198831	1071.57467	-2.0293	-0.00072688	2.2497	0.00080583	0.22043	7.8959E-05	358.1997466851522	19.378	0.14338	19.378	19.306	19.45	0					6	3	2	0	0	0	0.45358	1	5270	5270		52.937	16.49	1	102590			16236	6760	10000	10049	16492	16492					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7950439453125	2	536.794609	1071.57467	0.69964	0.00037556	-0.52925	-0.0002841	0.17039	9.1466E-05	536.7945927245545	19.506	0.36336	19.506	19.394	19.757	0					20	7	4	0	0	0	0.010494	1	6051	6051		139.97	73.541	1	1559000			16237	6760	10000	10049	16493	16493					0.0417407211691625
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.794921875	2	536.794609	1071.57467	1.9547	0.0010493	-2.1088	-0.001132	-0.15412	-8.2732E-05	536.7937969158542	19.528	0.46432	19.528	19.276	19.741	0					28	9	5	0	0	0	0.010494	1	6067	6067		139.97	73.541	1	2532000			16238	6760	10000	10049	16494	16494					0.0417407211691625
HETSNINDF	9	Unmodified	_HETSNINDF_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000603996.1_1_5:151230113-151230284:+|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7359619140625	2	538.735803	1075.45705	1.5073	0.00081205	-0.39105	-0.00021067	1.1163	0.00060138	538.7354194380963	27.849	0.24555	27.849	27.753	27.998	0					15	8	3	0	0	0	0.14578	1	8631	8631		68.846	20.931	1	250570			16239	4023	10001	10050	16495	16495					-0.0776578921820601
HETSNINDF	9	Unmodified	_HETSNINDF_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000603996.1_1_5:151230113-151230284:+|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.736328125	2	538.735803	1075.45705	-0.19165	-0.00010325	1.0609	0.00057152	0.86921	0.00046827	538.7363618007344	27.859	0.26037	27.859	27.762	28.022	0					23	9	3	0	0	0	0.22837	1	8913	8913		58.23	21.783	1	340770			16240	4023	10001	10050	16496	16496					-0.0776578921820601
HETSNINDF	9	Unmodified	_HETSNINDF_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000603996.1_1_5:151230113-151230284:+|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7360229492188	2	538.735803	1075.45705	1.925	0.0010371	-0.93795	-0.0005053	0.98709	0.00053178	538.73517727103	28.132	0.48618	28.132	27.996	28.482	0					26	10	4	0	0	0	0.22837	1	10262	10262		58.23	6.8945	1	2575200			16241	4023	10001	10050	16497	16497					-0.0776578921820601
HETSNINDF	9	Unmodified	_HETSNINDF_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000603996.1_1_5:151230113-151230284:+|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7362670898438	2	538.735803	1075.45705	1.0074	0.0005427	-0.32789	-0.00017664	0.67948	0.00036606	538.735519932755	27.915	0.25462	27.915	27.828	28.082	0					13	6	3	0	0	0	0.026848	1	9204	9204		112.11	51.813	1	287770			16242	4023	10001	10050	16498	16498					-0.0776578921820601
HETSNINDF	9	Unmodified	_HETSNINDF_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000603996.1_1_5:151230113-151230284:+|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7361450195312	2	538.735803	1075.45705	2.043	0.0011007	-1.116	-0.00060124	0.927	0.00049941	538.7351992916194	28.052	0.41634	28.052	27.943	28.359	0					22	8	4	0	0	0	0.054723	1	10127	10127		93.598	42.405	1	1833300			16243	4023	10001	10050	16499	16499					-0.0776578921820601
HETTFNSI	8	Unmodified	_HETTFNSI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000437653.1_1_3:175695464-175695797:-|nuORF;ENST00000418351.1_1_15:44281261-44281585:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7248229980469	2	474.724707	947.43486	-0.010807	-5.1302E-06	-0.66384	-0.00031514	-0.67465	-0.00032027	474.72448335445654	29.271	0.17643	29.271	29.192	29.369	0					16	7	3	0	0	0	0.51384	1	9205	9205		58.782	4.0056	1	174970			16244	1545;6995;7397;7857	10002	10051	16500	16500					-0.04095968895956048
HETTFNSIM	9	Unmodified	_HETTFNSIM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000437653.1_1_3:175695464-175695797:-|nuORF;ENST00000418351.1_1_15:44281261-44281585:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2450561523438	2	540.244949	1078.47534	0.27219	0.00014705	-0.18612	-0.00010055	0.086067	4.6497E-05	540.2448216177906	36.819	0.30209	36.819	36.702	37.004	0					21	8	4	0	0	0	0.19605	1	13905	13905		62.107	10.772	1	608480			16245	1545;6995;7397;7857	10003	10052	16501	16501					-0.060753705678507686
HETTITQQSV	10	Unmodified	_HETTITQQSV_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.285888671875	2	572.28566	1142.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.837	1	23.837	23.337	24.337	0								0	0	0	0.3185	1	6953	6953		47.96	5.4851	1				16246	6701	10004	10053	16502	16502					-0.008809716042605942
HEVAKQLDL	9	Unmodified	_HEVAKQLDL_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;FAM120A|p.V551Sfs*6|1|0.21|ENSG00000048828|chr9:93529491-93529491|C/-|frameshift_variant;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7916259765625	2	526.790381	1051.56621	2.021	0.0010646	-1.3363	-0.00070393	0.68473	0.00036071	526.789596212097	26.694	0.10428	26.694	26.598	26.702	0					4	2	2	0	0	0	0.0067848	1	9228	9228		150.36	57.218	1	176930			16247	1234	10005	10054	16503	16503					0.04248841471940068
HEVARQSRL	9	Unmodified	_HEVARQSRL_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	365.8716735839844	3	365.872106	1094.59449	-0.10608	-3.8813E-05	-2.3262	-0.00085111	-2.4323	-0.00088992	365.8718516617205	16.631	0.11827	16.631	16.555	16.673	0					7	3	3	0	0	0	0.47038	1	3986	3986		42.864	0	1	69037			16248	3651	10006	10055	16504	16504					0.05097584171903691
HEVDPVRRA	9	Unmodified	_HEVDPVRRA_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.1962585449219	3	360.19659	1077.56794	0.11839	4.2645E-05	-0.041609	-1.4988E-05	0.076785	2.7658E-05	360.1965752053268	16.473	0.12715	16.473	16.376	16.503	0					7	4	2	0	0	0	0.57706	1	3750	3750		24.519	13.932	1	214380			16249	3091	10007	10056	16505	16505					0.03225895280570512
HEVDPVRRA	9	Unmodified	_HEVDPVRRA_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.1965026855469	3	360.19659	1077.56794	0.48249	0.00017379	-0.59771	-0.00021529	-0.11522	-4.1503E-05	360.19633299489874	16.736	0.21204	16.736	16.608	16.82	0					13	5	3	0	0	0	0.61124	1	4606	4606		26.693	1.1189	1	1063300			16250	3091	10007	10056	16506	16506					0.03225895280570512
HEVDPVRRA	9	Unmodified	_HEVDPVRRA_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7920532226562	2	539.791247	1077.56794	-0.081679	-4.409E-05	1.1684	0.00063069	1.0867	0.0005866	539.7919194682041	16.458	0.15228	16.458	16.368	16.52	0					7	4	2	0	0	0	0.13267	1	3952	3952		71.877	17.101	1	88160			16251	3091	10007	10056	16507	16507					0.03225895280570512
HEVDPVRRA	9	Unmodified	_HEVDPVRRA_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7921142578125	2	539.791247	1077.56794	1.9584	0.0010571	-1.0042	-0.00054206	0.9542	0.00051507	539.7908308964063	16.672	0.30325	16.672	16.515	16.818	0					10	6	3	0	0	0	0.12239	1	4824	4824		74.255	28.303	1	701190			16252	3091	10007	10056	16508	16508					0.03225895280570512
HEVDPVRRA	9	Unmodified	_HEVDPVRRA_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.792236328125	2	539.791247	1077.56794	1.0225	0.00055192	-1.0226	-0.00055199	-0.00012438	-6.7139E-08	539.7911417813154	16.519	0.12414	16.519	16.442	16.566	0					5	3	2	0	0	0	0.59802	1	3931	3931		21.96	0	1	59055			16253	3091	10007	10056	16509	16509					0.03225895280570512
HEVDPVRRA	9	Unmodified	_HEVDPVRRA_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7928466796875	2	539.791247	1077.56794	2.085	0.0011255	-0.47534	-0.00025659	1.6096	0.00086887	539.7910921995251	16.689	0.21369	16.689	16.583	16.796	0					7	4	2	0	0	0	0.2873	1	4686	4686		51.335	1.8939	1	553940			16254	3091	10007	10056	16510	16510					0.03225895280570512
HEVDPVRRA	9	Unmodified	_HEVDPVRRA_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.791748046875	2	539.791247	1077.56794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.701	1	16.701	16.201	17.201	0								0	0	0	0.05454	1	4678	4678		84.916	21.937	1				16255	3091	10007	10056	16511	16511					0.03225895280570512
HEVDPVRRAV	10	Unmodified	_HEVDPVRRAV_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.21923828125	3	393.219395	1176.63635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.179	1	20.179	19.679	20.679	0								0	0	0	0.3598	1	6500	6500		41.427	17.904	1				16256	3091	10008	10057	16512	16512					0.0551013986041653
HEVEDVIIKC	10	Unmodified	_HEVEDVIIKC_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000594243.1_1_19:18965730-18966052:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.8026733398438	2	592.802631	1183.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.485	1	33.485	32.985	33.985	0								0	0	0	0.29806	1	12820	12820		51.193	14.746	1				16257	950	10009	10058	16513	16513					0.00625733563151698
HEVEKMFTL	9	Unmodified	_HEVEKMFTL_					0	0	0		ENST00000544349.5_1_12:122735394-122750988:-|nuORF;VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A;VPS33A|p.F82Lfs*6|1|0.44|ENSG00000139719|chr12:122263622-122263622|A/-|frameshift_variant	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.287841796875	2	567.286617	1132.55868	1.765	0.0010013	-0.062748	-3.5596E-05	1.7023	0.00096568	567.2864274809114	37.036	0.18682	37.036	37.004	37.191	0					8	5	2	0	0	0	0.24095	1	14039	14039		56.721	0	1	41854			16258	4348	10010	10059	16514	16514					-0.0022963411995533534
HEVEKMFTL	9	Unmodified	_HEVEKMFTL_					0	0	0		ENST00000544349.5_1_12:122735394-122750988:-|nuORF;VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A;VPS33A|p.F82Lfs*6|1|0.44|ENSG00000139719|chr12:122263622-122263622|A/-|frameshift_variant	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.2861328125	2	567.286617	1132.55868	0.80499	0.00045666	-1.0735	-0.00060897	-0.26849	-0.00015231	567.2862002496774	37.055	0.23956	37.055	36.939	37.178	0					13	7	3	0	0	0	0.032383	1	14459	14459		106.68	40.254	1	80018			16259	4348	10010	10059	16515	16515					-0.0022963411995533534
HEVEKMFTL	9	Unmodified	_HEVEKMFTL_					0	0	0		ENST00000544349.5_1_12:122735394-122750988:-|nuORF;VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A;VPS33A|p.F82Lfs*6|1|0.44|ENSG00000139719|chr12:122263622-122263622|A/-|frameshift_variant	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2874145507812	2	567.286617	1132.55868	0.57239	0.00032471	0.066064	3.7477E-05	0.63845	0.00036219	567.2867573108534	37.011	0.35555	37.011	36.88	37.235	0					14	7	3	0	0	0	0.095583	1	14409	14409		80.455	32.797	1	210630			16260	4348	10010	10059	16516	16516					-0.0022963411995533534
HEVEKSEI	8	Unmodified	_HEVEKSEI_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7452087402344	2	485.745639	969.476725	0.35749	0.00017365	-0.69802	-0.00033906	-0.34053	-0.00016541	485.7449117407533	17.836	0.094584	17.836	17.788	17.883	0					4	2	2	0	0	0	0.32597	1	5114	5114		79.713	0.26157	1	80195			16261	1248	10011	10060	16517	16517					-0.009234132074197987
HEVEKSEI	8	Unmodified	_HEVEKSEI_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7451171875	2	485.745639	969.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.833	1	17.833	17.333	18.333	0								0	0	0	1.7419	1	5366	5366		87.696	23.489	1				16262	1248	10011	10060	16518	16518					-0.009234132074197987
HEVGALVRA	9	Unmodified	_HEVGALVRA_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF;ENST00000462392.5_1_2:131100637-131103595:+|nuORF;ENST00000473689.5_1_2:131100487-131103328:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.272216796875	2	476.272158	950.529764	0.59904	0.0002853	-0.15443	-7.3551E-05	0.4446	0.00021175	476.27194924262034	22.785	0.1362	22.785	22.698	22.834	0					6	3	2	0	0	0	0.012915	1	7461	7461		134.81	60.836	1	111220			16263	4101	10012	10061	16519	16519					0.05252009365892718
HEVGIGSVL	9	Unmodified	_HEVGIGSVL_					0	0	0		nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7528991699219	2	455.753267	909.491981	0.87833	0.0004003	-1.3342	-0.00060805	-0.45583	-0.00020775	455.7525573634293	38.635	0.31293	38.635	38.526	38.839	0					9	6	2	0	0	0	0.077948	1	15197	15197		85.359	16.875	1	246850			16264	3138	10013	10062	16520	16520					0.03361498380422745
HEVGSGAI	8	Unmodified	_HEVGSGAI_					0	0	0			REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	REV__AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.1957702636719	2	385.195585	768.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.989	1	12.989	12.489	13.489	0								0	0	0	1.7419	1	3058	3058		54.765	6.8491	1		+		16265	12125	10014	10063	16521	16521					-0.01683605750577044
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7803955078125	2	527.780013	1053.54547	1.2601	0.00066507	-0.63658	-0.00033598	0.62354	0.00032909	527.7796359641037	18.97	0.13463	18.97	18.907	19.042	0					7	4	2	0	0	0	0.078509	1	4829	4829		85.161	19.358	1	132420			16266	11514	10015	10064	16522	16522					0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7803344726562	2	527.780013	1053.54547	2.1439	0.0011315	-1.2066	-0.00063684	0.93722	0.00049464	527.779316420477	19.313	0.1995	19.313	19.215	19.414	0					9	4	3	0	0	0	0.048471	1	5816	5816		95.815	23.938	1	1570900			16267	11514	10015	10064	16523	16523					0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7808227539062	2	527.780013	1053.54547	0.28072	0.00014816	1.0139	0.00053509	1.2946	0.00068325	527.7804817162313	18.997	0.097715	18.997	18.936	19.034	0					5	3	2	0	0	0	0.25716	1	5074	5074		54.776	12.38	1	121770			16268	11514	10015	10064	16524	16524					0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7803955078125	2	527.780013	1053.54547	1.753	0.00092519	-1.0551	-0.00055684	0.69793	0.00036835	527.7795015456282	19.222	0.21556	19.222	19.115	19.33	0					7	4	2	0	0	0	0.16806	1	6053	6053		65.465	12.529	1	860710			16269	11514	10015	10064	16525	16525					0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7814331054688	2	527.780013	1053.54547	1.249	0.00065921	-0.126	-6.6502E-05	1.123	0.00059271	527.7803508562614	19.068	0.14257	19.068	19.021	19.164	0					6	3	2	0	0	0	0.098791	1	5117	5117		79.713	13.283	1	150780			16270	11514	10015	10064	16526	16526					0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7807006835938	2	527.780013	1053.54547	0.67302	0.00035521	0.58501	0.00030875	1.258	0.00066396	527.7803098724721	19.204	0.21518	19.204	19.145	19.36	0					6	4	2	0	0	0	0.037924	1	5904	5904		101.25	19.012	1	1197900			16271	11514	10015	10064	16527	16527					0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7803955078125	2	527.780013	1053.54547	1.6288	0.00085964	-1.0017	-0.00052868	0.62709	0.00033096	527.7793275353625	19.215	0.21468	19.215	19.129	19.343	0					7	4	3	0	0	0	0.037924	1	5899	5899		101.25	19.012	1	851630			16272	11514	10015	10064	16528	16528					0.02084251092287559
HEVKKVTL	8	Unmodified	_HEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.292236328125	2	477.292559	952.570566	-0.10526	-5.0242E-05	0.17708	8.4518E-05	0.071814	3.4276E-05	477.2922807653605	18.234	0.10778	18.234	18.178	18.286	0					6	4	2	0	0	0	0.27635	1	4516	4516		90.37	44.418	1	59570			16273	2066	10016	10065	16529	16529					0.09238350685518526
HEVKKVTL	8	Unmodified	_HEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2934875488281	2	477.292559	952.570566	0.55815	0.0002664	2.3012	0.0010983	2.8593	0.0013647	477.2936554779069	30.633	0.18264	30.633	30.458	30.641	0					7	4	2	0	0	0	0.73426	2	11055	11035;11055		29.15	4.9468	1	86401			16274	2066	10016	10065	16530;16531	16531					0.09238350685518526
HEVKKVTL	8	Unmodified	_HEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2922058105469	2	477.292559	952.570566	-0.33319	-0.00015903	-0.35833	-0.00017103	-0.69152	-0.00033006	477.29241726702685	18.596	0.18172	18.596	18.501	18.683	0					9	4	3	0	0	0	0.35045	1	5475	5475		76.774	41.156	1	561250			16275	2066	10016	10065	16532	16532					0.09238350685518526
HEVKKVTL	8	Unmodified	_HEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2919921875	2	477.292559	952.570566	-1.4941	-0.00071314	0.26765	0.00012775	-1.2265	-0.00058539	477.2926955084204	18.263	0.11026	18.263	18.204	18.314	0					7	4	2	0	0	0	0.41	1	4737	4737		69.628	39.124	1	118160			16276	2066	10016	10065	16533	16533					0.09238350685518526
HEVKKVTL	8	Unmodified	_HEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.29241943359375	2	477.292559	952.570566	0.64073	0.00030582	-1.1127	-0.00053109	-0.47198	-0.00022527	477.29202195021264	18.552	0.16875	18.552	18.443	18.611	0					6	3	2	0	0	0	0.25987	1	5726	5726		95.815	48.158	1	845660			16277	2066	10016	10065	16534	16534					0.09238350685518526
HEVKKVTL	8	Unmodified	_HEVKKVTL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2922668457031	2	477.292559	952.570566	0.8184	0.00039062	-1.3468	-0.00064282	-0.52841	-0.00025221	477.29192158108964	18.514	0.31445	18.514	18.404	18.719	0					8	6	2	0	0	0	0.23635	1	5569	5569		118.74	65.392	1	897840			16278	2066	10016	10065	16535	16535					0.09238350685518526
HEVKTQNKL	9	Unmodified	_HEVKTQNKL_					0	0	0		ENSG00000105829|ENST00000222547|BET1;nc|ENSG00000105829|O15155-2|BET1	ENSG00000105829|ENST00000222547|BET1	ENSG00000105829|ENST00000222547|BET1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8099975585938	2	548.809105	1095.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.32	1	15.32	14.82	15.82	0								0	0	0	0.072369	1	4012	4012		79.713	10.926	1				16279	2400	10017	10066	16536	16536					0.059679327375761204
HEVLVTTKV	9	Unmodified	_HEVLVTTKV_					0	0	0		DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.303955078125	2	513.303124	1024.5917	1.4483	0.00074344	-0.25723	-0.00013203	1.1911	0.0006114	513.3030182465546	25	0.17704	25	24.914	25.091	0					6	4	2	0	0	0	0.015496	1	8478	8478		129.42	65.214	1	117780			16280	786	10018	10067	16537	16537					0.0803831599437217
HEVLVTTKV	9	Unmodified	_HEVLVTTKV_					0	0	0		DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.30322265625	2	513.303124	1024.5917	0.59389	0.00030484	-0.12527	-6.4302E-05	0.46861	0.00024054	513.3029899019215	24.965	0.16702	24.965	24.857	25.024	0					6	3	2	0	0	0	0.032383	1	8791	8791		106.68	51.907	1	208370			16281	786	10018	10067	16538	16538					0.0803831599437217
HEVLVTTKV	9	Unmodified	_HEVLVTTKV_					0	0	0		DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.3040161132812	2	513.303124	1024.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.817	1	24.817	24.317	25.317	0								0	0	0	0.35377	1	7797	7797		24.519	6.1948	1				16282	786	10018	10067	16539	16539					0.0803831599437217
HEVLVTTKV	9	Unmodified	_HEVLVTTKV_					0	0	0		DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.3027954101562	2	513.303124	1024.5917	0.087759	4.5047E-05	-0.20691	-0.00010621	-0.11915	-6.1162E-05	513.3029466479812	24.921	0.20813	24.921	24.771	24.979	0					8	4	3	0	0	0	0.020674	1	8650	8650		120.87	66.092	1	447720			16283	786	10018	10067	16540	16540					0.0803831599437217
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.7642822265625	2	557.763506	1113.51246	1.2942	0.00072186	-0.91225	-0.00050882	0.38196	0.00021304	557.7632685731742	27.68	0.20969	27.68	27.606	27.816	0					17	6	4	0	0	0	0.15558	1	8566	8566		66.962	0	1	340850			16284	2305	10019	10068	16541	16541					-0.03975699022066692
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7642211914062	2	557.763506	1113.51246	0.54319	0.00030297	2.8404	0.0015843	3.3836	0.0018872	557.7641050575498	27.643	0.34443	27.643	27.489	27.833	0					16	8	3	0	0	0	0.076532	1	9655	9655		85.862	0	1	600040			16285	2305	10019	10068	16542	16542					-0.03975699022066692
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7639770507812	2	557.763506	1113.51246	0.54236	0.00030251	0.012555	7.0029E-06	0.55492	0.00030951	557.7636548959586	27.927	0.29932	27.927	27.822	28.121	0					19	7	4	0	0	0	0.0097668	1	9815	9815		141.52	0	1	2168800			16286	2305	10019	10068	16543	16543					-0.03975699022066692
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7640380859375	2	557.763506	1113.51246	0.11926	6.6519E-05	0.67331	0.00037555	0.79257	0.00044206	557.764032488114	27.679	0.24109	27.679	27.614	27.855	0					19	8	3	0	0	0	0.37744	1	8852	8852		43.651	0	1	395090			16287	2305	10019	10068	16544	16544					-0.03975699022066692
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7635498046875	2	557.763506	1113.51246	1.7327	0.00096646	-1.3069	-0.00072894	0.42584	0.00023752	557.7630141808339	27.955	0.58997	27.955	27.506	28.096	0					25	12	4	0	0	0	0.25761	1	10224	10224		54.722	0	1	1960100			16288	2305	10019	10068	16545	16545					-0.03975699022066692
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.763671875	2	557.763506	1113.51246	-0.8797	-0.00049066	1.1863	0.0006617	0.30664	0.00017104	557.7641575074405	27.745	0.26209	27.745	27.645	27.907	0					16	6	4	0	0	0	0.082776	1	9139	9139		83.647	0	1	384710			16289	2305	10019	10068	16546	16546					-0.03975699022066692
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7637329101562	2	557.763506	1113.51246	3.4801	0.0019411	-2.6035	-0.0014522	0.87655	0.00048891	557.7622425081032	27.886	0.61983	27.886	27.373	27.993	0					21	12	4	0	0	0	0.026848	1	10046	10046		112.11	0	1	2812000			16290	2305	10019	10068	16547	16547					-0.03975699022066692
HEVPGESQM	9	Oxidation (M)	_HEVPGESQM(Oxidation (M))_		HEVPGESQM(1)		HEVPGESQM(46)	0	0	1			REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2186889648438	2	515.218931	1028.42331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.954	1	38.954	38.454	39.454	0								0	0	0	0.23459	1	15302	15302		45.952	8.1404	1		+		16291	13010	10020	10069	16548	16548		502			-0.0897653398158127
HEVQALNSK	9	Unmodified	_HEVQALNSK_					0	0	0			REV__ENSG00000166689|ENST00000531066|PLEKHA7	REV__ENSG00000166689|ENST00000531066|PLEKHA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.272216796875	2	513.272355	1024.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.03	1	21.03	20.53	21.53	0								0	0	0	0.20989	1	6781	6781		49.536	0.094497	1		+		16292	16137	10021	10070	16549	16549					0.01887384295105221
HEVRIQPSL	9	Unmodified	_HEVRIQPSL_					0	0	0		FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8038940429688	2	539.803823	1077.59309	1.4448	0.00077993	-1.2769	-0.00068928	0.16792	9.0643E-05	539.8029982416219	27.922	0.39217	27.922	27.815	28.207	0					16	8	4	0	0	0	0.19952	1	10159	10159		61.691	27.519	1	399250			16293	4699	10022	10071	16550	16550					0.0573995008314796
HEVRIQPSL	9	Unmodified	_HEVRIQPSL_					0	0	0		FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.8045654296875	2	539.803823	1077.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.789	1	27.789	27.289	28.289	0								0	0	0	0.26578	1	9137	9137		41.427	11.109	1				16294	4699	10022	10071	16551	16551					0.0573995008314796
HEVRIQPSL	9	Unmodified	_HEVRIQPSL_					0	0	0		FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8036499023438	2	539.803823	1077.59309	0.67476	0.00036424	-0.42584	-0.00022987	0.24891	0.00013436	539.8034742136762	27.87	0.56676	27.87	27.662	28.228	0					21	11	4	0	0	0	0.04067	1	10016	10016		98.582	39.8	1	821200			16295	4699	10022	10071	16552	16552					0.0573995008314796
HEVSFAKQ	8	Unmodified	_HEVSFAKQ_					0	0	0			REV__AGGF1|p.N681Tfs*29|4|0.3|ENSG00000164252|chr5:77063142-77063142|A/-|frameshift_variant	REV__AGGF1|p.N681Tfs*29|4|0.3|ENSG00000164252|chr5:77063142-77063142|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2431945800781	2	473.243067	944.47158	-0.14036	-6.6424E-05	0.29197	0.00013817	0.15161	7.175E-05	473.24318343854304	24.364	0.22028	24.364	24.274	24.495	0					9	5	2	0	0	0	0.60719	1	7595	7595		47.916	0	1	163710	+		16296	12108	10023	10072	16553	16553					-0.0028767227937578355
HEVVARPEL	9	Unmodified	_HEVVARPEL_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3|VWA5B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2922973632812	2	525.290548	1048.56654	2.0374	0.0010702	-0.19836	-0.0001042	1.8391	0.00096605	525.2902100586738	25.811	0.30966	25.811	25.636	25.946	0					7	5	2	0	0	0	0.4966	1	8854	8854		32.812	0	1	44934	+		16297	21085	10024	10073	16554	16554					0.044202611917853574
HEYKDGPKQ	9	Unmodified	_HEYKDGPKQ_					0	0	0			REV__ENSG00000009830|ENST00000261534|POMT2	REV__ENSG00000009830|ENST00000261534|POMT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2705078125	2	551.269813	1100.52507	0.69815	0.00038487	0.50122	0.00027631	1.1994	0.00066117	551.2701289768621	26.455	0.42353	26.455	26.298	26.722	0					16	8	3	0	0	0	0.44593	1	9414	9414		37.812	9.9293	1	181700	+		16298	12886	10025	10074	16555	16555					-0.021169195675156516
HEYRSRAR	8	Unmodified	_HEYRSRAR_					0	0	0			REV__ENSG00000036530|ENST00000261835|CYP46A1	REV__ENSG00000036530|ENST00000261835|CYP46A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.78369140625	2	537.781213	1073.54787	3.3435	0.0017981	0.50491	0.00027153	3.8485	0.0020696	537.781011309775	13.283	0.29104	13.283	13.176	13.467	0					9	6	2	0	0	0	0.63077	1	3036	3036		44.117	4.864	1	583080	+		16299	12983	10026	10075	16556	16556					0.014041443405858445
HEYVDQPKM	9	Unmodified	_HEYVDQPKM_					0	0	0		SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.7667236328125	2	573.766049	1145.51754	0.94975	0.00054493	-0.058135	-3.3356E-05	0.89161	0.00051158	573.7660601526889	24.318	0.21381	24.318	24.213	24.427	0					7	4	2	0	0	0	0.056004	1	8510	8510		93.143	40.207	1	121850			16300	1874	10027	10076	16557	16557					-0.04939395159453852
HEYVDQPKM	9	Unmodified	_HEYVDQPKM_					0	0	0		SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.7659912109375	2	573.766049	1145.51754	0.15948	9.1502E-05	-0.18585	-0.00010663	-0.026375	-1.5133E-05	573.7660321676393	24.287	0.21758	24.287	24.179	24.397	0					10	4	3	0	0	0	0.012936	1	8372	8372		134.77	81.829	1	438220			16301	1874	10027	10076	16558	16558					-0.04939395159453852
HFANIGTLS	9	Unmodified	_HFANIGTLS_					0	0	0			REV__nc|ENSG00000072756|Q96Q11-3|TRNT1	REV__nc|ENSG00000072756|Q96Q11-3|TRNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2523193359375	2	480.250892	958.48723	-0.64582	-0.00031015	4.4256	0.0021254	3.7798	0.0018153	480.2525706444843	30.701	0.36905	30.701	30.529	30.898	0					14	7	2	0	0	0	0.48389	1	11378	11378		34.173	1.3601	1	109960	+		16302	20938	10028	10077	16559	16559					0.006326142376792632
HFELGGDK	8	Unmodified	_HFELGGDK_					0	0	0		ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7223815917969	2	451.721967	901.429381	0.55902	0.00025252	0.018565	8.3864E-06	0.57758	0.00026091	451.7220642520083	22.298	0.15959	22.298	22.225	22.384	0					6	4	2	0	0	0	0.51384	1	6291	6291		58.782	10.866	1	93643			16303	5805	10029	10078	16560	16560					-0.025276476877593268
HFELGGDK	8	Unmodified	_HFELGGDK_					0	0	0		ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.72222900390625	2	451.721967	901.429381	0.23486	0.00010609	-0.63355	-0.00028619	-0.39869	-0.0001801	451.7217016948982	22.627	0.26196	22.627	22.531	22.793	0					14	6	3	0	0	0	0.24328	1	7366	7366		113.41	24.769	1	496950			16304	5805	10029	10078	16561	16561					-0.025276476877593268
HFELGGDK	8	Unmodified	_HFELGGDK_					0	0	0		ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7217712402344	2	451.721967	901.429381	-0.111	-5.0143E-05	-0.42081	-0.00019009	-0.53181	-0.00024023	451.72184280625015	22.53	0.31037	22.53	22.417	22.728	0					12	6	3	0	0	0	0.29212	1	7649	7649		85.161	37.245	1	371170			16305	5805	10029	10078	16562	16562					-0.025276476877593268
HFETVNNNA	9	Unmodified	_HFETVNNNA_					0	0	0		tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1	tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1	tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2406616210938	2	523.238513	1044.46247	3.4144	0.0017866	0.27452	0.00014364	3.689	0.0019302	523.2386302526875	11.897	1.3173	11.897	11.778	13.095	0					96	35	5	0	0	0	0.47038	1	2538	2538		35.618	10.168	1	34239000			16306	23039	10030	10079	16563	16563					-0.05798065635713101
HFGVHPAPG	9	Unmodified	_HFGVHPAPG_					0	0	0		ENSG00000180667|ENST00000315927|YOD1	ENSG00000180667|ENST00000315927|YOD1	ENSG00000180667|ENST00000315927|YOD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7308044433594	2	459.732669	917.450785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.599	1	15.599	15.099	16.099	0								0	0	0	0.21213	1	3424	3424		49.211	6.8147	1				16307	6813	10031	10080	16564	16564					-0.011242178683914972
HFGVSNKTAPV	11	Unmodified	_HFGVSNKTAPV_					0	0	0			REV__ENSG00000146530|ENST00000275358|VWDE	REV__ENSG00000146530|ENST00000275358|VWDE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.2084655761719	3	386.208495	1155.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.388	1	25.388	24.888	25.888	0								0	0	0	0.41918	1	7636	7636		28.577	0	1		+		16308	15316	10032	10081	16565	16565					0.03207932737541341
HFHDKKIL	8	Unmodified	_HFHDKKIL_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000554320.1_1_14:74417278-74422542:+|nuORF;ENST00000553462.6_1_14:74416969-74422542:+|nuORF;ENST00000553922.5_1_14:74417278-74422293:+|nuORF;ENST00000554217.5_1_14:74417035-74420277:+|nuORF;ENST00000555196.5_1_14:74417278-74423148:+|nuORF;ENST00000555552.5_1_14:74417035-74423148:+|nuORF;ENST00000554193.5_1_14:74417035-74422669:+|nuORF;ENST00000556300.6_1_14:74417008-74425067:+|nuORF	nc|ENSG00000119723|Q9Y2Z9-3|COQ6	nc|ENSG00000119723|Q9Y2Z9-3|COQ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2981567382812	2	519.298176	1036.5818	-0.73483	-0.00038159	0.7537	0.0003914	0.018874	9.801E-06	519.2983258416051	50.009	0.10429	50.009	49.957	50.062	0					10	6	2	0	0	0	0.58597	1	16420	16420		51.335	5.3835	1	46610			16309	3135	10033	10082	16566	16566					0.06497172779654647
HFHRCSTAHP	10	Unmodified	_HFHRCSTAHP_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.774658203125	2	596.775074	1191.53559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.93	1	28.93	28.43	29.43	0								0	0	0	0.4201	1	10656	10656		21.96	1.013	1		+		16310	15125	10034	10083	16567	16567					-0.05251215394105202
HFIECQLPQ	9	Unmodified	_HFIECQLPQ_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7703247070312	2	557.771134	1113.52771	-0.18499	-0.00010318	-1.2365	-0.00068968	-1.4215	-0.00079286	557.7703224105072	14.671	0.11767	14.671	14.613	14.731	0					4	2	2	0	0	0	0.35045	1	3869	3869		45.952	3.5558	1	144140	+		16311	14709	10035	10084	16568	16568					-0.0245078743423619
HFIKGCVDCK	10	Unmodified	_HFIKGCVDCK_					0	0	0			REV__ENSG00000197343|ENST00000252713|ZNF655	REV__ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.2822265625	2	575.280812	1148.54707	0.60121	0.00034586	2.931	0.0016862	3.5322	0.002032	575.7842464022325	20.271	0.15051	20.271	20.173	20.324	0					5	3	2	0	0	0	0.65213	1	5677	5677		27.882	6.9353	1	129250	+		16312	17327	10036	10085	16569	16569					-0.021261544149865585
HFIMATGPSR	10	Oxidation (M)	_HFIM(Oxidation (M))ATGPSR_		HFIM(1)ATGPSR		HFIM(70)ATGPSR	0	0	1			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.7833251953125	2	566.782033	1131.54951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.986	1	33.986	33.486	34.486	0								0	0	0	0.15566	1	11090	11090		69.628	14.851	1		+		16313	15200	10037	10086	16570	16570		579			-0.010999826856505024
HFLQGAKSL	9	Unmodified	_HFLQGAKSL_					0	0	0			REV__ENSG00000204033|ENST00000372113|LRIT2	REV__ENSG00000204033|ENST00000372113|LRIT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.78021240234375	2	500.782359	999.550165	-0.1387	-6.9457E-05	-3.0692	-0.001537	-3.2079	-0.0016064	500.7804074757109	23.686	0.15218	23.686	23.633	23.785	0					5	3	2	0	0	0	0.24095	1	7887	7887		56.721	0	1	378790	+		16314	17464	10038	10087	16571	16571					0.050371800257153154
HFNMFTGKFYC	11	Unmodified	_HFNMFTGKFYC_					0	0	0		ENST00000582625.1_1_17:77043224-77044167:+|nuORF;ENSG00000173918|ENST00000579760|C1QTNF1;nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1	ENST00000582625.1_1_17:77043224-77044167:+|nuORF	ENST00000582625.1_1_17:77043224-77044167:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.5391845703125	3	465.538859	1393.59475	-0.13712	-6.3837E-05	0.60661	0.0002824	0.46949	0.00021857	465.53925078495206	17.913	0.57432	17.913	17.701	18.275	0					28	11	4	0	0	0	0.57554	1	5392	5392		38.714	1.1142	1	15636000			16315	6461	10039	10088	16572	16572					-0.08630500214758285
HFTEGEGPV	9	Unmodified	_HFTEGEGPV_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7261657714844	2	486.724707	971.43486	2.5365	0.0012346	0.091846	4.4704E-05	2.6284	0.0012793	486.72490046808457	31.943	0.36761	31.943	31.786	32.153	0					19	7	4	0	0	0	0.25109	1	11981	11981		55.504	55.504	1	2810100	+		16316	21069	10040	10089	16573	16573					-0.05199968895931306
HFTHVFVD	8	Unmodified	_HFTHVFVD_					0	0	0		nc|ENSG00000073146|Q9BXT6-5|MOV10L1;nc|ENSG00000073146|Q9BXT6-4|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1;nc|ENSG00000073146|Q9BXT6-2|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2456970214844	2	501.245609	1000.47667	-1.0442	-0.00052339	1.2028	0.00060292	0.15866	7.9527E-05	501.24630157686255	12.838	0.075249	12.838	12.796	12.871	0					8	4	2	0	0	0	0.7914	1	2574	2574		14.664	0	1	253230			16317	1510	10041	10090	16574	16574					-0.023553684167723077
HFTKLAVEAV	10	Unmodified	_HFTKLAVEAV_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2;CCT2|p.L188F|1|0.19|ENSG00000166226|chr12:69589600-69589600|C/T|missense_variant	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8165893554688	2	557.816399	1113.61824	-0.17923	-9.9975E-05	0.56528	0.00031532	0.38606	0.00021535	557.8166611298117	19.255	0.26443	19.255	19.148	19.412	0					8	5	2	0	0	0	0.66185	1	6065	6065		26.693	1.1189	1	267320			16318	5876	10042	10091	16575	16575					0.06598004885677256
HFVDMHSSF	9	Unmodified	_HFVDMHSSF_					0	0	0		ENST00000369842.8_1_X:153609573-153609861:+|nuORF	ENST00000369842.8_1_X:153609573-153609861:+|nuORF	ENST00000369842.8_1_X:153609573-153609861:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7373657226562	2	553.739834	1105.46511	-0.0013696	-7.5839E-07	-1.4966	-0.00082871	-1.4979	-0.00082947	553.7376716520835	12.406	0.67505	12.406	12.168	12.843	0					35	16	4	0	0	0	0.50461	1	2759	2759		31.955	0.42505	1	871000			16319	8948	10043	10092	16576	16576					-0.08339933502406893
HFVRGLGLFE	10	Unmodified	_HFVRGLGLFE_					0	0	0			REV__ENSG00000235961|ENST00000421798|PNMA6A	REV__ENSG00000235961|ENST00000421798|PNMA6A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.2929077148438	2	587.822015	1173.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.42	1	12.42	11.92	12.92	0								0	0	0	0.4201	1	2790	2790		15.642	0	1		+		16320	17660	10044	10093	16577	16577					0.049608269798454785
HFYEKPSY	8	Unmodified	_HFYEKPSY_					0	0	0		ENST00000606893.5_1_6:110501354-110532119:+|nuORF	ENST00000606893.5_1_6:110501354-110532119:+|nuORF	ENST00000606893.5_1_6:110501354-110532119:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.749755859375	2	535.750724	1069.4869	-0.54499	-0.00029198	-2.3258	-0.0012461	-2.8708	-0.001538	535.7494809117741	23.309	0.22184	23.309	23.179	23.4	0					16	7	3	0	0	0	0.5676	1	6982	6982		53.351	0.41475	1	178350			16321	11087	10045	10094	16578	16578					-0.04506805482196796
HFYWWEFIRQW	11	Unmodified	_HFYWWEFIRQW_					0	0	0			REV__ENST00000470683.1_1_1:113153424-113161548:-|nuORF	REV__ENST00000470683.1_1_1:113153424-113161548:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.6076049804688	3	566.605249	1696.79392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.533	1	15.533	15.033	16.033	0								0	0	0	0.45674	1	4032	4032		1.4188	1.0473	1		+		16322	19473	10046	10095	16579	16579					-0.026607806002175494
HGADQFGSSF	10	Unmodified	_HGADQFGSSF_					0	0	0			REV__nc|ENSG00000142733|O95382-2|MAP3K6	REV__nc|ENSG00000142733|O95382-2|MAP3K6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7259521484375	2	526.725238	1051.43592	1.7618	0.000928	-0.53504	-0.00028182	1.2268	0.00064618	526.724978274969	37.934	0.30758	37.934	37.81	38.117	0					29	10	4	0	0	0	0.36476	1	14841	14841		60.118	4.6141	1	568120	+		16323	15159	10047	10096	16580	16580					-0.08773754527032906
HGANEDAVD	9	Unmodified	_HGANEDAVD_					0	0	0		ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.19342041015625	2	464.193771	926.372988	-0.73502	-0.00034119	0.19237	8.9299E-05	-0.54265	-0.00025189	464.1938358180919	18.483	0.84485	18.483	18.026	18.871	0					69	29	4	0	0	0	0.24095	1	4822	4822		56.721	8.8055	1	926150			16324	7565	10048	10097	16581	16581					-0.09314320315093028
HGATNDLTF	9	Unmodified	_HGATNDLTF_					0	0	0		ENSG00000162267|ENST00000449956|ITIH3;nc|ENSG00000162267|Q06033-2|ITIH3	ENSG00000162267|ENST00000449956|ITIH3	ENSG00000162267|ENST00000449956|ITIH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2323303222656	2	488.230156	974.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.728	1	13.728	13.228	14.228	0								0	0	0	0.30504	1	2802	2802		34.173	2.6427	1				16325	5450	10049	10098	16582	16582					-0.042485665216759116
HGCQDASQRHC	11	Unmodified	_HGCQDASQRHC_					0	0	0		ENST00000304987.3_1_11:111596525-111596654:+|nuORF	ENST00000304987.3_1_11:111596525-111596654:+|nuORF	ENST00000304987.3_1_11:111596525-111596654:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	621.248779296875	2	621.248563	1240.48257	0.24764	0.00015385	0.20588	0.0001279	0.45352	0.00028175	621.2485981129769	49.662	0.94299	49.662	49.418	50.361	0					115	41	4	0	0	0	0.69524	1	17975	17975		28.081	3.5623	1	865870			16326	8511	10050	10099	16583	16583					-0.12804961239044133
HGDSAMHL	8	Unmodified	_HGDSAMHL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.1928405761719	2	434.192519	866.370486	-0.44279	-0.00019225	1.1867	0.00051527	0.74394	0.00032301	434.19299951131325	27.961	0.3025	27.961	27.862	28.165	0					14	7	3	0	0	0	0.70055	1	9839	9839		33.516	33.516	1	254680			16327	1576	10051	10100	16584	16584					-0.06804447253739454
HGFGNVHAY	9	Unmodified	_HGFGNVHAY_					0	0	0		nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2328796386719	2	501.233033	1000.45151	0.42894	0.000215	-0.61356	-0.00030754	-0.18462	-9.2537E-05	501.23279228287043	24.656	0.29036	24.656	24.579	24.869	0					14	8	2	0	0	0	0.14734	1	7319	7319		68.485	36.53	1	171130			16328	4609	10052	10101	16585	16585					-0.048694232193497555
HGFGNVHAY	9	Unmodified	_HGFGNVHAY_					0	0	0		nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.23291015625	2	501.233033	1000.45151	0.67537	0.00033852	-0.85724	-0.00042968	-0.18187	-9.1157E-05	501.2326345648144	24.944	0.52007	24.944	24.825	25.345	0					27	12	3	0	0	0	0.037966	1	8456	8456		101.21	53.296	1	1149100			16329	4609	10052	10101	16586	16586					-0.048694232193497555
HGFGNVHAY	9	Unmodified	_HGFGNVHAY_					0	0	0		nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2330322265625	2	501.233033	1000.45151	-0.97129	-0.00048684	0.85087	0.00042648	-0.12042	-6.0357E-05	501.2335423770842	24.709	0.32579	24.709	24.618	24.944	0					20	11	3	0	0	0	0.043797	1	7590	7590		97.473	39.661	1	185190			16330	4609	10052	10101	16587	16587					-0.048694232193497555
HGFGNVHAY	9	Unmodified	_HGFGNVHAY_					0	0	0		nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2328796386719	2	501.233033	1000.45151	0.93743	0.00046987	-0.84634	-0.00042422	0.091086	4.5655E-05	501.2325908797405	24.948	0.91289	24.948	24.842	25.755	0					31	18	3	0	0	0	0.1236	1	8804	8804		73.975	31.579	1	1204800			16331	4609	10052	10101	16588	16588					-0.048694232193497555
HGFGNVHAY	9	Unmodified	_HGFGNVHAY_					0	0	0		nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2327880859375	2	501.233033	1000.45151	0.1482	7.4283E-05	-0.19191	-9.6191E-05	-0.043708	-2.1908E-05	501.23283780304536	24.776	0.3662	24.776	24.689	25.055	0					12	8	2	0	0	0	0.097811	1	7788	7788		79.939	39.161	1	159560			16332	4609	10052	10101	16589	16589					-0.048694232193497555
HGFGNVHAY	9	Unmodified	_HGFGNVHAY_					0	0	0		nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	nc|ENSG00000144354|Q9BWT1-3|CDCA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2328796386719	2	501.233033	1000.45151	-0.59259	-0.00029702	0.42189	0.00021147	-0.17069	-8.5558E-05	501.23316969622203	24.876	0.45897	24.876	24.771	25.23	0					16	9	3	0	0	0	0.11118	1	8649	8649		76.847	36.274	1	446150			16333	4609	10052	10101	16590	16590					-0.048694232193497555
HGFREGTTP	9	Unmodified	_HGFREGTTP_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2432861328125	2	501.243598	1000.47264	1.6199	0.00081195	-1.9982	-0.0010016	-0.37831	-0.00018963	501.242240215379	18.956	0.11348	18.956	18.88	18.993	0					5	3	2	0	0	0	0.42902	1	4818	4818		39.253	4.0521	1	54441			16334	4677	10053	10102	16591	16591					-0.027574579104793884
HGFREGTTP	9	Unmodified	_HGFREGTTP_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.24346923828125	2	501.243598	1000.47264	0.60031	0.0003009	-1.0752	-0.00053892	-0.47485	-0.00023802	501.2431495420149	19.285	0.24842	19.285	19.182	19.43	0					11	5	3	0	0	0	0.0792	1	5783	5783		84.916	33.58	1	354580			16335	4677	10053	10102	16592	16592					-0.027574579104793884
HGGFAIRH	8	Unmodified	_HGGFAIRH_					0	0	0			REV__SMC1A|p.R626H|1|0.58|ENSG00000072501|chrX:53405527-53405527|C/T|missense_variant	REV__SMC1A|p.R626H|1|0.58|ENSG00000072501|chrX:53405527-53405527|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.73773193359375	2	447.738286	893.462019	0.11046	4.9456E-05	-0.22061	-9.8775E-05	-0.11015	-4.932E-05	447.73813310785187	20.882	0.13068	20.882	20.832	20.962	0					6	4	2	0	0	0	0.36926	1	5671	5671		74.517	27.75	1	93898	+		16336	21545	10054	10103	16593	16593					0.01102604225752657
HGGFAIRH	8	Unmodified	_HGGFAIRH_					0	0	0			REV__SMC1A|p.R626H|1|0.58|ENSG00000072501|chrX:53405527-53405527|C/T|missense_variant	REV__SMC1A|p.R626H|1|0.58|ENSG00000072501|chrX:53405527-53405527|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7383117675781	2	447.738286	893.462019	0.61264	0.0002743	-0.55103	-0.00024672	0.061605	2.7583E-05	447.7380875105774	21.221	0.31077	21.221	21.093	21.404	0					13	7	2	0	0	0	0.36926	1	6705	6705		74.517	24.492	1	924220	+		16337	21545	10054	10103	16594	16594					0.01102604225752657
HGGFAIRH	8	Unmodified	_HGGFAIRH_					0	0	0			REV__SMC1A|p.R626H|1|0.58|ENSG00000072501|chrX:53405527-53405527|C/T|missense_variant	REV__SMC1A|p.R626H|1|0.58|ENSG00000072501|chrX:53405527-53405527|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7374267578125	2	447.738286	893.462019	0.8478	0.00037959	-1.5703	-0.00070307	-0.72248	-0.00032348	447.7373609528171	21.134	0.26248	21.134	21.025	21.288	0					9	5	2	0	0	0	0.49887	1	6845	6845		60.294	2.4827	1	684360	+		16338	21545	10054	10103	16595	16595					0.01102604225752657
HGGKARQK	8	Unmodified	_HGGKARQK_					0	0	0		ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.25823974609375	2	441.256843	880.499132	2.6287	0.0011599	-8.1472E-05	-3.595E-08	2.6286	0.0011599	441.25686874067463	40.333	0.3731	40.333	40.205	40.578	0					22	8	4	0	0	0	0.6282	1	15976	15976		44.531	7.372	1	1082000			16339	1702	10055	10104	16596	16596					0.05410275771509987
HGGLVGSA	8	Unmodified	_HGGLVGSA_					0	0	0			REV__FLVCR1|p.P67H|1|0.27|ENSG00000162769|chr1:212858652-212858652|C/A|missense_variant	REV__FLVCR1|p.P67H|1|0.27|ENSG00000162769|chr1:212858652-212858652|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.1851806640625	2	349.18502	696.355488	0.49825	0.00017398	-0.44135	-0.00015411	0.0569	1.9869E-05	349.18493528773195	45.617	0.42389	45.617	45.392	45.816	0					30	24	2	0	0	0	0.78146	1	16949	16949		23.037	0	1	253580	+		16340	20678	10056	10105	16597	16597					-0.004835710594193188
HGGTRVISL	9	Unmodified	_HGGTRVISL_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.271728515625	2	470.272158	938.529764	-0.87171	-0.00040994	0.48135	0.00022636	-0.39037	-0.00018358	470.27242971663117	52.691	0.20237	52.691	52.583	52.786	0					33	12	3	0	0	0	0.53083	1	19370	19370		29.15	3.5755	1	206370	+		16341	14908	10057	10106	16598	16598					0.05804009365908769
HGHVGADL	8	Unmodified	_HGHVGADL_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENST00000480327.1_1_9:35060776-35061606:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.2012023925781	2	403.201202	804.387851	0.04383	1.7672E-05	-0.29578	-0.00011926	-0.25195	-0.00010159	403.20100387208606	18.863	0.14838	18.863	18.802	18.951	0					5	3	2	0	0	0	0.39542	1	5866	5866		71.378	8.3995	1	120760			16342	5780	10058	10107	16599	16599					-0.02216783656433563
HGIDPTGTY	9	Unmodified	_HGIDPTGTY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7245178222656	2	480.724707	959.43486	-0.10899	-5.2393E-05	-0.05087	-2.4454E-05	-0.15986	-7.6847E-05	480.7247371977157	29.104	0.34792	29.104	28.878	29.226	0					16	7	3	0	0	0	0.53083	1	10715	10715		29.15	6.1071	1	188140			16343	7342	10059	10108	16600	16600					-0.046479688959493615
HGKLYERI	8	Unmodified	_HGKLYERI_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2881774902344	2	508.287808	1014.56106	0.91501	0.00046509	-1.1085	-0.00056343	-0.19348	-9.8341E-05	508.2872304658637	28.409	0.153	28.409	28.34	28.493	0					9	5	2	0	0	0	0.44433	1	8866	8866		65.803	12.452	1	116580	+		16344	16678	10060	10109	16601	16601					0.054365823999773966
HGKNQNVI	8	Unmodified	_HGKNQNVI_					0	0	0			REV__ZNF615|p.T281Lfs*103|1|0.3|ENSG00000197619|chr19:51994235-51994235|T/-|frameshift_variant	REV__ZNF615|p.T281Lfs*103|1|0.3|ENSG00000197619|chr19:51994235-51994235|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2481384277344	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.69	1	39.69	39.19	40.19	0								0	0	0	1.7419	1	15118	15118		35.201	8.4046	1		+		16345	17348	10061	10110	16602	16602					0.024911498147389466
HGKSKEYK	8	Unmodified	_HGKSKEYK_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.76470947265625	2	488.764166	975.513779	1.2915	0.00063124	-0.91764	-0.00044851	0.37385	0.00018272	488.763859428836	16.169	0.12465	16.169	16.085	16.21	0					9	5	2	0	0	0	0.6088	1	3643	3643		47.657	1.6851	1	121610	+		16346	16914	10062	10111	16603	16603					0.025043031289897044
HGLLTTVAY	9	Unmodified	_HGLLTTVAY_					0	0	0		nc|ENSG00000198814|P32189-1|GK;nc|ENSG00000198814|P32189-4|GK;GK2|p.F535Lfs*2|1|0.08|ENSG00000196475|chr4:79406596-79406596|A/-|frameshift_variant;nc|ENSG00000198814|P32189-2|GK;ENSG00000229894|ENST00000505354|GK3;ENSG00000196475|ENST00000358842|GK2;ENSG00000198814|ENST00000427190|GK	nc|ENSG00000198814|P32189-1|GK	nc|ENSG00000198814|P32189-1|GK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7679443359375	2	487.768917	973.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.037	1	38.037	37.537	38.537	0								0	0	0	0.27939	1	13612	13612		31.955	2.8053	1				16347	7367	10063	10112	16604	16604					0.03546071414518792
HGLVEVASY	9	Unmodified	_HGLVEVASY_					0	0	0		ENST00000592937.1_1_19:2477233-2477596:+|nuORF;ENSG00000099860|ENST00000215631|GADD45B	ENST00000592937.1_1_19:2477233-2477596:+|nuORF	ENST00000592937.1_1_19:2477233-2477596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7503356933594	2	487.750724	973.486896	0.73513	0.00035856	0.086535	4.2207E-05	0.82166	0.00040077	487.7504924720112	34.822	0.55095	34.822	34.652	35.203	0					23	14	3	0	0	0	0.25109	1	12977	12977		55.504	2.1528	1	179380			16348	1945	10064	10113	16605	16605					-0.0009080548219344564
HGLVEVASY	9	Unmodified	_HGLVEVASY_					0	0	0		ENST00000592937.1_1_19:2477233-2477596:+|nuORF;ENSG00000099860|ENST00000215631|GADD45B	ENST00000592937.1_1_19:2477233-2477596:+|nuORF	ENST00000592937.1_1_19:2477233-2477596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.750244140625	2	487.750724	973.486896	-0.081804	-3.99E-05	-0.53998	-0.00026337	-0.62178	-0.00030327	487.7504366160149	34.738	0.16206	34.738	34.657	34.819	0					8	4	2	0	0	0	0.14603	1	13423	13423		68.787	15.435	1	108950			16349	1945	10064	10113	16606	16606					-0.0009080548219344564
HGPGEALAL	9	Unmodified	_HGPGEALAL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.73095703125	2	432.732335	863.450116	0.73427	0.00031774	-2.5926	-0.0011219	-1.8584	-0.00080418	432.7310592673367	33.402	0.2093	33.402	33.26	33.469	0					8	5	2	0	0	0	0.23186	1	12335	12335		57.811	15.337	1	77186			16350	8114	10065	10114	16607	16607					0.01292942691884491
HGPGEALAL	9	Unmodified	_HGPGEALAL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.7323303222656	2	432.732335	863.450116	-0.4878	-0.00021109	0.16429	7.1094E-05	-0.32351	-0.00013999	432.7326107786675	33.294	0.2165	33.294	33.199	33.415	0					7	4	2	0	0	0	0.49003	1	12661	12661		33.516	0.022601	1	48083			16351	8114	10065	10114	16608	16608					0.01292942691884491
HGPGPVGAL	9	Unmodified	_HGPGPVGAL_					0	0	0		nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-2|ELP5	nc|ENSG00000170291|Q8TE02-2|ELP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.7217102050781	2	402.72177	803.428987	0.95111	0.00038303	-1.0035	-0.00040413	-0.052402	-2.1103E-05	402.72141334868905	28.87	0.33195	28.87	28.686	29.018	0					12	8	2	0	0	0	0.43174	1	10234	10234		39.021	9.18	1	125020			16352	6225	10066	10115	16609	16609					0.019409773830375343
HGPMKATQARG	11	Unmodified	_HGPMKATQARG_					0	0	0			REV__ENST00000601338.5_1_19:23588133-23598773:-|nuORF	REV__ENST00000601338.5_1_19:23588133-23598773:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.2968139648438	2	577.298381	1152.58221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.691	1	39.691	39.191	40.191	0								0	0	0	0.3769	1	15618	15618		41.427	8.6142	1		+		16353	20586	10067	10116	16610	16610					0.012022244372019486
HGRVHPGAGP	10	Unmodified	_HGRVHPGAGP_					0	0	0			REV__ENST00000270328.8_1_19:8670242-8670626:-|nuORF	REV__ENST00000270328.8_1_19:8670242-8670626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.76092529296875	2	492.759749	983.504946	2.7461	0.0013532	-0.44358	-0.00021858	2.3026	0.0011346	492.75958169972415	38.075	0.43274	38.075	37.961	38.393	0					22	9	3	0	0	0	0.52275	1	14943	14943		38.806	38.806	1	1264700	+		16354	18096	10068	10117	16611	16611					0.012533742831806194
HGSGGGKN	8	Unmodified	_HGSGGGKN_					0	0	0		IRS4|p.K843Ffs*9|1|0.05|ENSG00000133124|chrX:108733818-108733819|-/TATTACAAAA|frameshift_variant;IRS4|p.K843Pfs*106|1|0.02|ENSG00000133124|chrX:108733819-108733820|-/GA|frameshift_variant;IRS4|p.S1063Afs*9|1|0.36|ENSG00000133124|chrX:108733159-108733159|G/-|frameshift_variant;ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4	IRS4|p.K843Ffs*9|1|0.05|ENSG00000133124|chrX:108733818-108733819|-/TATTACAAAA|frameshift_variant	IRS4|p.K843Ffs*9|1|0.05|ENSG00000133124|chrX:108733818-108733819|-/TATTACAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.1706848144531	2	357.169902	712.32525	3.0746	0.0010982	-2.168	-0.00077434	0.90665	0.00032383	357.16922873715686	45.487	0.33916	45.487	45.387	45.726	0					20	12	2	0	0	0	0.79719	1	18215	18215		18.324	0	1	241510			16355	3843	10069	10118	16612	16612					-0.04241929724616966
HGSGILQL	8	Unmodified	_HGSGILQL_					0	0	0			REV__ENSG00000198092|ENST00000356291|TMPRSS11F	REV__ENSG00000198092|ENST00000356291|TMPRSS11F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.73486328125	2	412.734877	823.455202	-0.15454	-6.3785E-05	0.20489	8.4563E-05	0.050344	2.0779E-05	412.73483967953473	27.336	0.13368	27.336	27.267	27.401	0					9	5	2	0	0	0	0.49887	1	8409	8409		60.294	0	1	104260	+		16356	17379	10070	10119	16613	16613					0.03641246554514055
HGSRNWCK	8	Unmodified	_HGSRNWCK_					0	0	0			REV__DEFB118|p.Q37Lfs*23|1|0.12|ENSG00000131068|chr20:31372908-31372909|AA/-|frameshift_variant	REV__DEFB118|p.Q37Lfs*23|1|0.12|ENSG00000131068|chr20:31372908-31372909|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2320556640625	2	494.23251	986.450468	-2.5175	-0.0012443	0.86131	0.00042569	-1.6562	-0.00081857	494.23297847271425	16.439	0.22852	16.439	16.366	16.595	0					8	6	2	0	0	0	0.67394	1	3889	3889		37.159	37.159	1	184370	+		16357	12692	10071	10120	16614	16614					-0.04329960859899984
HGTVVALRY	9	Unmodified	_HGTVVALRY_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.28790283203125	2	508.287808	1014.56106	0.89994	0.00045743	-0.58832	-0.00029904	0.31162	0.00015839	508.28770076905175	28.693	0.33747	28.693	28.603	28.94	0					14	8	3	0	0	0	0.034359	1	10181	10181		104.75	53.411	1	715640			16358	2603	10072	10121	16615	16615					0.054365823999773966
HGTVVALRY	9	Unmodified	_HGTVVALRY_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.28765869140625	2	508.287808	1014.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.467	1	28.467	27.967	28.967	0								0	0	0	0.17378	1	9183	9183		54.776	28.083	1				16359	2603	10072	10121	16616	16616					0.054365823999773966
HGTVVALRY	9	Unmodified	_HGTVVALRY_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2879333496094	2	508.287808	1014.56106	0.18504	9.4055E-05	-0.27382	-0.00013918	-0.088778	-4.5125E-05	508.2879416514717	28.687	0.26504	28.687	28.581	28.846	0					10	5	3	0	0	0	0.03984	1	10527	10527		99.375	40.593	1	456540			16360	2603	10072	10121	16617	16617					0.054365823999773966
HGTVVALRY	9	Unmodified	_HGTVVALRY_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.28863525390625	2	508.287808	1014.56106	0.49386	0.00025102	-0.60279	-0.00030639	-0.10893	-5.5366E-05	508.78864514288665	28.498	0.089182	28.498	28.416	28.506	0					4	2	2	0	0	0	0.30951	1	9458	9458		49.442	21.559	1	70104			16361	2603	10072	10121	16618	16618					0.054365823999773966
HGTVVALRY	9	Unmodified	_HGTVVALRY_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2869567871094	2	508.287808	1014.56106	0.10486	5.3298E-05	-2.0771	-0.0010558	-1.9722	-0.0010025	508.28667653272305	28.481	0.20908	28.481	28.403	28.613	0					7	5	2	0	0	0	0.30951	1	9471	9471		49.442	10.189	1	82220			16362	2603	10072	10121	16619	16619					0.054365823999773966
HGTVVALRY	9	Unmodified	_HGTVVALRY_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2878723144531	2	508.287808	1014.56106	-0.10211	-5.1901E-05	-0.057615	-2.9285E-05	-0.15972	-8.1186E-05	508.2879919035039	28.617	0.4672	28.617	28.409	28.877	0					14	9	3	0	0	0	0.034359	1	10377	10377		104.75	55.305	1	789340			16363	2603	10072	10121	16620	16620					0.054365823999773966
HGTVVALRY	9	Unmodified	_HGTVVALRY_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2874755859375	2	508.287808	1014.56106	1.3149	0.00066833	-1.4706	-0.00074751	-0.15577	-7.9177E-05	508.2871654853415	28.599	0.51421	28.599	28.495	29.009	0					24	10	3	0	0	0	0.034359	1	10392	10392		104.75	53.411	1	778720			16364	2603	10072	10121	16621	16621					0.054365823999773966
HGVDVDVSV	9	Unmodified	_HGVDVDVSV_					0	0	0		HYAL1|p.E45G|1|0.44|ENSG00000114378|chr3:50302823-50302823|T/C|missense_variant;nc|ENSG00000114378|Q12794-4|HYAL1;nc|ENSG00000114378|Q12794-7|HYAL1;HYAL1|p.A315Gfs*69|1|0.23|ENSG00000114378|chr3:50301034-50301035|-/C|frameshift_variant;nc|ENSG00000114378|Q12794-2|HYAL1;ENSG00000114378|ENST00000395144|HYAL1	HYAL1|p.E45G|1|0.44|ENSG00000114378|chr3:50302823-50302823|T/C|missense_variant	HYAL1|p.E45G|1|0.44|ENSG00000114378|chr3:50302823-50302823|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.73211669921875	2	463.732532	925.45051	-0.70055	-0.00032487	0.058565	2.7158E-05	-0.64199	-0.00029771	463.73275829366094	33.614	0.21138	33.614	33.486	33.698	0					17	5	4	0	0	0	0.25109	1	12437	12437		55.504	2.1528	1	370460			16365	2844	10073	10122	16622	16622					-0.015196823788983238
HGVGAPLR	8	Unmodified	_HGVGAPLR_					0	0	0		ENST00000470714.5_1_7:99933771-99935846:+|nuORF	ENST00000470714.5_1_7:99933771-99935846:+|nuORF	ENST00000470714.5_1_7:99933771-99935846:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.7351379394531	2	403.735212	805.455871	0.040865	1.6499E-05	2.5544	0.0010313	2.5952	0.0010478	403.7350364661727	16.169	0.21713	16.169	16.03	16.247	0					6	4	2	0	0	0	0.34071	1	4589	4589		77.944	20.491	1	139630			16366	9844	10074	10123	16623	16623					0.04536085994232053
HGVSVRCLGGR	11	Unmodified	_HGVSVRCLGGR_					0	0	0			REV__ENST00000465027.1_1_7:99686972-99687407:+|nuORF	REV__ENST00000465027.1_1_7:99686972-99687407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.8062133789062	2	570.806374	1139.59819	0.0071479	4.0801E-06	-0.12565	-7.172E-05	-0.1185	-6.764E-05	570.806275878321	41.909	0.12896	41.909	41.875	42.004	0					9	6	2	0	0	0	0.60656	1	15915	15915		36.447	1.2947	1	65019	+		16367	19408	10075	10124	16624	16624					0.0339793067410028
HHAAHPGGPPP	11	Unmodified	_HHAAHPGGPPP_					0	0	0			REV__ENST00000216487.11_1_14:93118154-93118406:+|nuORF	REV__ENST00000216487.11_1_14:93118154-93118406:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7640380859375	2	537.765032	1073.51551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.538	1	17.538	17.038	18.038	0								0	0	0	0.45674	1	4200	4200		17.365	0	1		+		16368	17883	10076	10125	16625	16625					-0.018306430623852066
HHAWFSRQ	8	Unmodified	_HHAWFSRQ_					0	0	0			REV__ENST00000393067.7_1_11:111250173-111250392:-|nuORF	REV__ENST00000393067.7_1_11:111250173-111250392:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7609252929688	2	534.759749	1067.50495	3.375	0.0018048	-0.91045	-0.00048687	2.4646	0.0013179	534.7592949288575	33.042	0.44255	33.042	32.84	33.283	0					13	9	2	0	0	0	0.54629	1	12502	12502		55.504	2.1528	1	1730200	+		16369	18840	10077	10126	16626	16626					-0.026106257168294178
HHCCHLSGQ	9	Unmodified	_HHCCHLSGQ_					0	0	0		ENST00000340305.9_1_1:9662349-9662721:+|nuORF	ENST00000340305.9_1_1:9662349-9662721:+|nuORF	ENST00000340305.9_1_1:9662349-9662721:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7906799316406	2	511.208178	1020.4018	-0.0038064	-1.9459E-06	2.3654	0.0012092	2.3616	0.0012073	511.2100010550271	13.487	0.21846	13.487	13.406	13.624	0					8	6	2	0	0	0	0.57706	1	3076	3076		24.203	1.1603	1	95472			16370	8726	10078	10127	16627	16627					-0.107581974913046
HHEELAAAL	9	Unmodified	_HHEELAAAL_					0	0	0		ENST00000249601.8_1_10:49791013-49812893:-|nuORF;ENST00000435790.6_1_10:49791013-49860397:-|nuORF	ENST00000249601.8_1_10:49791013-49812893:-|nuORF	ENST00000249601.8_1_10:49791013-49812893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.75823974609375	2	495.753798	989.493044	0.72357	0.00035871	-0.652	-0.00032323	0.071574	3.5483E-05	495.75365615216634	25.197	1.6396	25.197	24.545	26.185	0					71	31	5	0	0	0	0.30268	1	9139	9139		50.025	5.6474	1	15793000			16371	8239	10079	10128	16628	16628					-0.0021228725069022403
HHFSLFLR	8	Unmodified	_HHFSLFLR_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|241|1|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|241|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.790283203125	2	528.790518	1055.56648	0.11026	5.8306E-05	-0.8207	-0.00043398	-0.71044	-0.00037567	528.7901058916699	31.804	0.45374	31.804	31.685	32.139	0					24	11	4	0	0	0	0.34985	1	11608	11608		76.847	4.9692	1	1156800	+		16372	20726	10080	10129	16629	16629					0.04092305982453581
HHFSLFLR	8	Unmodified	_HHFSLFLR_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|241|1|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|241|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.790283203125	2	528.790518	1055.56648	-1.1723	-0.00061991	1.169	0.00061817	-0.0032893	-1.7393E-06	528.7907826980072	31.552	0.24401	31.552	31.463	31.707	0					9	6	2	0	0	0	0.59411	1	10881	10881		50.025	7.6284	1	202950	+		16373	20726	10080	10129	16630	16630					0.04092305982453581
HHGCKEYK	8	Unmodified	_HHGCKEYK_					0	0	0			REV__ENSG00000196081|ENST00000418100|ZNF724	REV__ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2336120605469	2	501.234719	1000.45488	-0.59345	-0.00029746	-0.98377	-0.0004931	-1.5772	-0.00079056	501.23428510826375	30.108	1.7999	30.108	28.658	30.458	0					76	36	3	0	0	0	0.77246	1	10928	10928		24.203	2.2429	1	1878900	+		16374	17223	10081	10130	16631	16631					-0.04532496436991096
HHGPRHLL	8	Unmodified	_HHGPRHLL_					0	0	0			REV__TRIM49C|p.L17Pfs*38|1|0.13|ENSG00000204449|chr11:90035255-90035256|-/C|frameshift_variant	REV__TRIM49C|p.L17Pfs*38|1|0.13|ENSG00000204449|chr11:90035255-90035256|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.77142333984375	2	483.77266	965.530767	-1.26	-0.00060956	-0.54904	-0.00026561	-1.8091	-0.00087517	483.77237970917776	16.805	0.33829	16.805	16.606	16.944	0					37	14	4	0	0	0	0.67394	1	4053	4053		26.796	26.796	1	1503100	+		16375	22236	10082	10131	16632	16632					0.04662268525464697
HHIRFIPW	8	Unmodified	_HHIRFIPW_					0	0	0			REV__ENST00000471813.1_1_7:99008715-99013888:+|nuORF	REV__ENST00000471813.1_1_7:99008715-99013888:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.304931640625	2	553.306336	1104.59812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.646	1	16.646	16.146	17.146	0								0	0	0	1.7419	1	3828	3828		26.796	14.589	1		+		16376	13815	10083	10132	16633	16633					0.050002987363996
HHITFINKV	9	Unmodified	_HHITFINKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.21307373046875	3	370.213581	1107.61891	-2.093	-0.00077484	0.90149	0.00033374	-1.1915	-0.0004411	370.21384035260587	30.983	0.23269	30.983	30.932	31.164	0					10	6	3	0	0	0	0.61124	1	10625	10625		19.997	0	1	217160			16377	5134;23079	10084	10133	16634	16634					0.06940844325413309
HHLEVGYM	8	Unmodified	_HHLEVGYM_					0	0	0			REV__EPB41L3|p.D299E|1|0.24|ENSG00000082397|chr18:5433484-5433484|A/T|missense_variant	REV__EPB41L3|p.D299E|1|0.24|ENSG00000082397|chr18:5433484-5433484|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2298889160156	2	493.231645	984.448736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.468	1	18.468	17.968	18.968	0								0	0	0	1.7419	1	4825	4825		37.028	8.7742	1		+		16378	20639	10085	10134	16635	16635					-0.044110146684943174
HHLFLMLS	8	Unmodified	_HHLFLMLS_					0	0	0			REV__ENST00000498066.1_1_2:102484451-102486985:+|nuORF	REV__ENST00000498066.1_1_2:102484451-102486985:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.1819152832031	3	333.181112	996.521507	1.6361	0.00054511	0.70176	0.00023381	2.3378	0.00077892	333.18138125735106	16.643	0.60738	16.643	16.483	17.09	0					18	12	3	0	0	0	0.61433	1	4656	4656		47.916	13.743	1	10602000	+		16379	19794	10086	10135	16636	16636					0.023107391249027387
HHLSGQEVPP	10	Unmodified	_HHLSGQEVPP_					0	0	0		ENST00000397901.7_1_16:89712038-89712440:-|nuORF	ENST00000397901.7_1_16:89712038-89712440:-|nuORF	ENST00000397901.7_1_16:89712038-89712440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.7763061523438	2	550.777805	1099.54106	-1.3884	-0.0007647	-1.1254	-0.00061985	-2.5138	-0.0013845	550.777241351206	37.147	0.34112	37.147	37.067	37.408	0					32	17	2	0	0	0	0.47859	1	13294	13294		47.657	0	1	911110			16380	9223	10087	10136	16637	16637					-0.004732133306106334
HHLSTRCSF	9	Unmodified	_HHLSTRCSF_					0	0	0		ENST00000373115.4_1_10:73772566-73772710:+|nuORF	ENST00000373115.4_1_10:73772566-73772710:+|nuORF	ENST00000373115.4_1_10:73772566-73772710:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.260986328125	2	544.258725	1086.5029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.411	1	42.411	41.911	42.911	0								0	0	0	0.3304	1	14823	14823		29.15	1.2673	1				16381	8990	10088	10137	16638	16638					-0.036894225169589845
HHPEPSAPRP	10	Unmodified	_HHPEPSAPRP_					0	0	0		CEP72|p.R176Efs*23|1|0.42|ENSG00000112877|chr5:633778-633778|C/-|frameshift_variant	CEP72|p.R176Efs*23|1|0.42|ENSG00000112877|chr5:633778-633778|C/-|frameshift_variant	CEP72|p.R176Efs*23|1|0.42|ENSG00000112877|chr5:633778-633778|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7835693359375	2	562.783422	1123.55229	1.8631	0.0010485	1.6558	0.00093183	3.5189	0.0019804	562.7834974409454	38.229	0.25363	38.229	38.139	38.393	0					12	9	2	0	0	0	0.63224	1	15009	15009		30.318	0	1	53597			16382	488	10089	10138	16639	16639					-0.004543912364852076
HHPGKHGY	8	Unmodified	_HHPGKHGY_					0	0	0			REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31	REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.72711181640625	2	466.727918	931.441283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.71	1	27.71	27.21	28.21	0								0	0	0	1.7419	1	9711	9711		29.842	1.9593	1		+		16383	13671	10090	10139	16640	16640					-0.02717986153925267
HHPRHLGHR	9	Unmodified	_HHPRHLGHR_					0	0	0			REV__nc|ENSG00000160191|O76083-12|PDE9A	REV__nc|ENSG00000160191|O76083-12|PDE9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8116455078125	2	573.810639	1145.60673	1.6695	0.00095798	0.19372	0.00011116	1.8632	0.0010691	573.8107799323258	33.611	0.25445	33.611	33.497	33.752	0					15	6	3	0	0	0	0.57706	1	12446	12446		24.203	24.203	1	695200	+		16384	21089	10091	10140	16641	16641					0.03974665425607782
HHQSAPAL	8	Unmodified	_HHQSAPAL_					0	0	0			REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF	REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7229309082031	2	430.722301	859.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.294	1	40.294	39.794	40.794	0								0	0	0	1.7419	1	15876	15876		37.159	0	1		+		16385	20186	10092	10141	16642	16642					-0.005288082480660705
HHRFIYRHKKH	11	Unmodified	_HHRFIYRHKKH_					0	0	0		ENST00000471102.1_1_10:46281927-46282167:+|nuORF	ENST00000471102.1_1_10:46281927-46282167:+|nuORF	ENST00000471102.1_1_10:46281927-46282167:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2938232421875	3	520.291999	1557.85417	1.1089	0.00057697	2.6122	0.0013591	3.7211	0.0019361	520.2932610499388	15.003	0.16955	15.003	14.943	15.113	0					5	3	2	0	0	0	0.82736	1	4025	4025		9.2118	2.8909	1	202710			16386	9849	10093	10142	16643	16643					0.09755374573524023
HHRPHSIG	8	Unmodified	_HHRPHSIG_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.745849609375	2	470.746642	939.478731	-2.3106	-0.0010877	0.47957	0.00022576	-1.8311	-0.00086197	470.74686289648093	23.499	0.34077	23.499	23.373	23.713	0					13	8	2	0	0	0	0.78142	1	7177	7177		23.042	23.042	1	163800			16387	8092	10094	10143	16644	16644					0.00657105111713463
HHRPTLISL	9	Unmodified	_HHRPTLISL_					0	0	0			REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3143920898438	2	537.314358	1072.61416	-1.4175	-0.00076165	1.1147	0.00059894	-0.30281	-0.00016271	537.314821646904	39.597	0.20775	39.597	39.521	39.728	0					15	10	2	0	0	0	0.30951	1	14093	14093		49.442	1.482	1	203790	+		16388	13366	10095	10144	16645	16645					0.08075960182668496
HHSFTQTI	8	Unmodified	_HHSFTQTI_					0	0	0			REV__ENSG00000090273|ENST00000321265|NUDC	REV__ENSG00000090273|ENST00000321265|NUDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.73944091796875	2	485.740691	969.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.826	1	43.826	43.326	44.326	0								0	0	0	1.7419	1	17554	17554		53.351	1.0523	1		+		16389	13424	10096	10145	16646	16646					-0.019125564221440072
HHVPPGPL	8	Unmodified	_HHVPPGPL_					0	0	0		ENST00000418309.1_1_7:156396604-156398412:-|nuORF;ENST00000440711.1_1_7:156397865-156398412:-|nuORF;ENST00000447933.5_1_7:156265368-156398412:-|nuORF	ENST00000418309.1_1_7:156396604-156398412:-|nuORF	ENST00000418309.1_1_7:156396604-156398412:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	285.16192626953125	3	285.160817	852.460622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.405	1	48.405	47.905	48.905	0								0	0	0	1.7419	1	17614	17614		7.6903	0	1				16390	9380	10097	10146	16647	16647					0.02848970136983553
HHVRLNSK	8	Unmodified	_HHVRLNSK_					0	0	0			REV__ENSG00000196597|ENST00000481138|ZNF782	REV__ENSG00000196597|ENST00000481138|ZNF782	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7843933105469	2	495.783225	989.551896	2.853	0.0014145	-0.37971	-0.00018825	2.4733	0.0012262	495.7830099302594	34.515	0.70292	34.515	34.261	34.964	0					33	14	3	0	0	0	0.3961	1	13222	13222		71.296	71.296	1	8320200	+		16391	17275	10098	10147	16648	16648					0.05670233834314331
HIAEPNYGK	9	Unmodified	_HIAEPNYGK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.761962890625	2	514.761623	1027.50869	0.72803	0.00037476	-0.30484	-0.00015692	0.42318	0.00021784	514.7615098508304	19.702	0.2152	19.702	19.576	19.792	0					7	4	2	0	0	0	0.33044	1	6276	6276		47.657	6.8792	1	152170			16392	5985	10099	10148	16649	16649					-0.003960007336445415
HIAEPNYGK	9	Unmodified	_HIAEPNYGK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7615356445312	2	514.761623	1027.50869	0.13738	7.072E-05	0.44202	0.00022754	0.57941	0.00029826	514.761500343514	19.742	0.26715	19.742	19.541	19.808	0					13	5	3	0	0	0	0.16806	1	6175	6175		65.465	10.689	1	229580			16393	5985	10099	10148	16650	16650					-0.003960007336445415
HIAKHEEAAE	10	Unmodified	_HIAKHEEAAE_					0	0	0			REV__ENSG00000283093|ENST00000634648|CENPVL2	REV__ENSG00000283093|ENST00000634648|CENPVL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.7825317382812	2	567.780544	1133.54654	3.47	0.0019702	0.45971	0.00026102	3.9298	0.0022312	567.7808052629182	46.372	0.1651	46.372	46.279	46.444	0					19	7	3	0	0	0	0.41335	1	18544	18544		54.776	3.5836	1	202290	+		16394	17617	10100	10149	16651	16651					-0.014895345388140413
HIALAGLR	8	Unmodified	_HIALAGLR_					0	0	0			REV__ENST00000563365.1_2_2:55509501-55509765:+|nuORF	REV__ENST00000563365.1_2_2:55509501-55509765:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.7667541503906	2	425.766512	849.518471	0.15571	6.6297E-05	0.31395	0.00013367	0.46966	0.00019997	425.7667206255787	26.922	0.20568	26.922	26.836	27.041	0					8	5	2	0	0	0	0.36926	1	8731	8731		74.517	0	1	145210	+		16395	18170	10101	10150	16652	16652					0.08769232062434185
HICTEGCFL	9	Carbamidomethyl (C)	_HIC(Carbamidomethyl (C))TEGCFL_	HIC(0.999)TEGC(0.001)FL		HIC(29)TEGC(-29)FL		0	1	0			REV__ENST00000393094.6_1_11:107975177-107975369:+|nuORF	REV__ENST00000393094.6_1_11:107975177-107975369:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2376708984375	2	540.23607	1078.45759	1.9312	0.0010433	1.8016	0.00097329	3.7328	0.0020166	540.2370720223302	36.629	0.26298	36.629	36.532	36.795	0					11	7	3	0	0	0	0.32741	1	13830	13830		47.916	12.715	2	46429	+		16396	18843	10102	10151	16653	16653	675				-0.07850409094339739
HIDMFLDHAGV	11	Unmodified	_HIDMFLDHAGV_					0	0	0			REV__WDPCP|p.R600H|1|0.31|ENSG00000143951|chr2:63313261-63313261|C/T|missense_variant	REV__WDPCP|p.R600H|1|0.31|ENSG00000143951|chr2:63313261-63313261|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	627.8012084960938	2	627.800423	1253.58629	1.2637	0.00079335	-0.1316	-8.2617E-05	1.1321	0.00071073	627.8002971468522	27.357	0.34607	27.357	27.196	27.542	0					20	8	3	0	0	0	0.56817	1	9564	9564		39.253	11.371	1	293010	+		16397	22289	10103	10152	16654	16654					-0.030357308597558585
HIEVFKGF	8	Unmodified	_HIEVFKGF_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.76910400390625	2	488.766178	975.517802	-0.023076	-1.1279E-05	4.4604	0.0021801	4.4374	0.0021688	488.7684415533024	18.83	0.16084	18.83	18.747	18.907	0					7	4	2	0	0	0	0.79719	1	4762	4762		18.324	0	1	70858	+		16398	17274	10104	10153	16655	16655					0.029063926227195225
HIFHPINR	8	Unmodified	_HIFHPINR_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2911376953125	2	517.288143	1032.56173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.727	1	14.727	14.227	15.227	0								0	0	0	1.7419	1	3083	3083		33.516	0	1		+		16399	21250	10105	10154	16656	16656					0.046754218397154546
HIFVYGPL	8	Unmodified	_HIFVYGPL_					0	0	0		nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2622985839844	2	473.263271	944.511988	-0.5801	-0.00027454	-1.4059	-0.00066538	-1.986	-0.00093991	473.2627980870519	30.986	0.30976	30.986	30.831	31.141	0					10	6	2	0	0	0	0.63381	1	11547	11547		43.626	6.4669	1	334680			16400	11476	10106	10155	16657	16657					0.03751294111043535
HIHICLAVM	9	Oxidation (M)	_HIHICLAVM(Oxidation (M))_		HIHICLAVM(1)		HIHICLAVM(49)	0	0	1			REV__ENST00000523214.5_1_8:125500837-125516518:-|nuORF	REV__ENST00000523214.5_1_8:125500837-125516518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2760009765625	2	526.772622	1051.53069	1.628	0.00085761	2.584	0.0013612	4.2121	0.0022188	527.2758124236539	47.761	0.11776	47.761	47.703	47.821	0					11	6	2	0	0	0	0.31222	1	19042	19042		49.211	6.7363	1	58641	+		16401	19970	10107	10156	16658	16658		727			0.006987644189166531
HIHKPKTL	8	Unmodified	_HIHKPKTL_					0	0	0		ENST00000359314.5_1_6:47501434-47512410:+|nuORF	ENST00000359314.5_1_6:47501434-47512410:+|nuORF	ENST00000359314.5_1_6:47501434-47512410:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.29931640625	2	487.300719	972.586885	-2.9117	-0.0014189	1.1627	0.00056659	-1.7489	-0.00085226	487.3011011248255	27.531	0.17293	27.531	27.443	27.616	0					10	4	3	0	0	0	0.70055	1	9007	9007		33.516	0	1	206830			16402	8848	10108	10157	16659	16659					0.09949476642282207
HIIAGAGEL	9	Unmodified	_HIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.7480773925781	2	440.747985	879.481417	0.28998	0.00012781	-0.35999	-0.00015867	-0.070011	-3.0857E-05	440.7478641508277	32	0.13189	32	31.921	32.053	0					9	5	2	0	0	0	0.55282	1	10331	10331		26.796	2.5934	1	59293			16403	6014	10109	10158	16660	16660					0.03685515726010635
HIIAGAGEL	9	Unmodified	_HIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.24951171875	2	440.747985	879.481417	-1.0605	-0.00046741	0.50269	0.00022156	-0.5578	-0.00024585	440.74811496667536	32.04	0.34372	32.04	31.933	32.277	0					24	14	2	0	0	0	0.30268	1	10669	10669		50.025	4.0726	1	122330			16404	6014	10109	10158	16661	16661					0.03685515726010635
HIIAGAGEL	9	Unmodified	_HIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.7478332519531	2	440.747985	879.481417	0.5529	0.00024369	-0.98971	-0.00043621	-0.43681	-0.00019252	440.7475425989161	32.236	0.57809	32.236	32.032	32.61	0					29	13	3	0	0	0	0.097811	1	12243	12243		79.939	26.588	1	584280			16405	6014	10109	10158	16662	16662					0.03685515726010635
HIIATSKSL	9	Unmodified	_HIIATSKSL_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.28997802734375	2	485.290017	968.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.725	1	22.725	22.225	23.225	0								0	0	0	0.1633	1	6733	6733		56.721	0	1				16406	2404	10110	10159	16663	16663					0.07994046822898326
HIIATSKSL	9	Unmodified	_HIIATSKSL_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.289794921875	2	485.290017	968.565481	-0.090903	-4.4114E-05	-0.38004	-0.00018443	-0.47094	-0.00022854	485.28994795864446	22.918	0.21724	22.918	22.811	23.028	0					10	4	4	0	0	0	0.021961	1	7815	7815		118.74	8.6232	1	375050			16407	2404	10110	10159	16664	16664					0.07994046822898326
HIIATSKSL	9	Unmodified	_HIIATSKSL_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2900390625	2	485.290017	968.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.774	1	22.774	22.274	23.274	0								0	0	0	0.099216	1	6841	6841		71.877	7.6702	1				16408	2404	10110	10159	16665	16665					0.07994046822898326
HIIATSKSL	9	Unmodified	_HIIATSKSL_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2897644042969	2	485.290017	968.565481	-0.56813	-0.00027571	-0.16758	-8.1327E-05	-0.73572	-0.00035704	485.2900658106039	22.897	0.21775	22.897	22.789	23.007	0					9	4	3	0	0	0	0.01768	1	7695	7695		125.81	8.9104	1	806960			16409	2404	10110	10159	16666	16666					0.07994046822898326
HIIIFDVL	8	Unmodified	_HIIIFDVL_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2901306152344	2	485.292028	968.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.686	1	22.686	22.186	23.186	0								0	0	0	1.7419	1	6452	6452		52.299	1.1065	1		+		16410	13212	10111	10160	16667	16667					0.08396136316616776
HIKGCNKM	8	Carbamidomethyl (C),Oxidation (M)	_HIKGC(Carbamidomethyl (C))NKM(Oxidation (M))_	HIKGC(1)NKM	HIKGCNKM(1)	HIKGC(55)NKM	HIKGCNKM(55)	0	1	1			REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.24603271484375	2	502.244229	1002.47391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.727	1	35.727	35.227	36.227	0								0	0	0	1.7419	1	13419	13419		54.765	10.648	1		+		16411	12258	10112	10161	16668	16668	482	474			-0.027232831375727073
HIKMIIMR	8	Unmodified	_HIKMIIMR_					0	0	0			REV__ENST00000178638.7_1_15:63615668-63615971:-|nuORF	REV__ENST00000178638.7_1_15:63615668-63615971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3084106445312	2	521.306632	1040.59871	3.3837	0.0017639	0.35135	0.00018316	3.735	0.0019471	521.3067344680825	49.609	0.26674	49.609	49.544	49.81	0					24	12	2	0	0	0	0.60719	1	19609	19609		47.916	13.743	1	936320	+		16412	17866	10113	10162	16669	16669					0.08003634069609689
HIKQWTRH	8	Unmodified	_HIKQWTRH_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.3054809570312	2	553.304324	1104.5941	0.20111	0.00011128	1.6336	0.00090386	1.8347	0.0010151	553.3053742025731	21.457	0.16689	21.457	21.386	21.553	0					11	5	3	0	0	0	0.64144	1	6169	6169		42.396	1.618	1	318040			16413	13856	10114	10163	16670	16670					0.04598209242703888
HILEEDRAC	9	Unmodified	_HILEEDRAC_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.25634765625	2	543.255848	1084.49714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.987	1	21.987	21.487	22.487	0								0	0	0	0.34845	1	6472	6472		25.574	3.6142	1		+		16414	15001	10115	10164	16671	16671					-0.041725658192717674
HILFCLLL	8	Unmodified	_HILFCLLL_					0	0	0		CH25H|p.L125P|1|0.22|ENSG00000138135|chr10:89206919-89206919|A/G|missense_variant;ENSG00000138135|ENST00000371852|CH25H	CH25H|p.L125P|1|0.22|ENSG00000138135|chr10:89206919-89206919|A/G|missense_variant	CH25H|p.L125P|1|0.22|ENSG00000138135|chr10:89206919-89206919|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.29193115234375	2	486.290974	970.567395	2.5218	0.0012263	-0.38139	-0.00018547	2.1404	0.0010409	486.2908030919412	40.901	0.88849	40.901	40.424	41.313	0					37	18	4	0	0	0	0.42924	1	16225	16225		67.327	12.433	1	1948900			16415	501	10116	10165	16672	16672					0.08093384307164797
HILPGQSID	9	Unmodified	_HILPGQSID_					0	0	0		ENSG00000137073|ENST00000379238|UBAP2;UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant	ENSG00000137073|ENST00000379238|UBAP2	ENSG00000137073|ENST00000379238|UBAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.1786193847656	3	327.178425	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.709	1	16.709	16.209	17.209	0								0	0	0	0.39145	1	4583	4583		13.454	2.8672	1				16416	4143	10117	10166	16673	16673					0.023328834091330464
HILRPGTAL	9	Unmodified	_HILRPGTAL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2980041503906	2	489.298176	976.581799	-0.51761	-0.00025327	0.30094	0.00014725	-0.21667	-0.00010602	489.2983259475476	26.661	0.51674	26.661	26.502	27.019	0					23	10	4	0	0	0	0.28504	1	9413	9413		44.377	7.2181	1	790420			16417	8044	10118	10167	16674	16674					0.09257172779643952
HILRPGTAL	9	Unmodified	_HILRPGTAL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2980041503906	2	489.298176	976.581799	0.77661	0.00037999	-1.0897	-0.00053317	-0.31306	-0.00015318	489.29764272547766	26.645	0.41637	26.645	26.486	26.902	0					15	8	3	0	0	0	0.18416	1	9452	9452		47.657	0	1	716710			16418	8044	10118	10167	16675	16675					0.09257172779643952
HILVFLFY	8	Unmodified	_HILVFLFY_					0	0	0		ENST00000447202.2_1_Y:21749110-21749530:+|nuORF	ENST00000447202.2_1_Y:21749110-21749530:+|nuORF	ENST00000447202.2_1_Y:21749110-21749530:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.3063354492188	2	526.302396	1050.59024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.065	1	44.065	43.565	44.565	0								0	0	0	1.7419	1	17658	17658		54.895	2.5954	1				16419	9626	10119	10168	16676	16676					0.06696726696281985
HIMGGHMI	8	Oxidation (M)	_HIMGGHM(Oxidation (M))I_		HIMGGHM(1)I		HIM(-33)GGHM(33)I	0	0	1			REV__ENST00000472704.1_1_X:41411986-41437658:-|nuORF	REV__ENST00000472704.1_1_X:41411986-41437658:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.2152099609375	2	456.21494	910.415328	-1.0804	-0.00049291	0.36203	0.00016516	-0.71842	-0.00032775	456.21520465257237	16.985	0.16514	16.985	16.896	17.061	0					11	6	2	0	0	0	0.63381	1	4158	4158		43.626	7.1793	2	55937	+		16420	12332	10120	10169	16677	16677		479			-0.04346339712037661
HINGNTQF	8	Unmodified	_HINGNTQF_					0	0	0		L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|28|1|anti-sense	L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|28|1|anti-sense	L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|28|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7250061035156	2	465.725041	929.435529	0.068876	3.2077E-05	0.87419	0.00040713	0.94306	0.00043921	465.72526997719285	23.712	0.21238	23.712	23.622	23.834	0					11	7	3	0	0	0	0.49216	1	6902	6902		60.972	18.497	1	148660			16421	11281	10121	10170	16678	16678					-0.0320112945623805
HINLTKYI	8	Unmodified	_HINLTKYI_					0	0	0			REV__ADAM7|p.L594Yfs*29|2|0.18|ENSG00000069206|chr8:24493162-24493162|T/-|frameshift_variant	REV__ADAM7|p.L594Yfs*29|2|0.18|ENSG00000069206|chr8:24493162-24493162|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.29095458984375	2	501.292559	1000.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.023	1	49.023	48.523	49.523	0								0	0	0	1.7419	1	14848	14848		24.203	1.1603	1		+		16422	12066	10122	10171	16679	16679					0.07030350685522535
HIPPGQCCPK	10	Unmodified	_HIPPGQCCPK_					0	0	0		BMPER|p.N305Kfs*25|1|0.05|ENSG00000164619|chr7:34055289-34055290|-/AAATAGAAATT|frameshift_variant;ENSG00000164619|ENST00000649409|BMPER	BMPER|p.N305Kfs*25|1|0.05|ENSG00000164619|chr7:34055289-34055290|-/AAATAGAAATT|frameshift_variant	BMPER|p.N305Kfs*25|1|0.05|ENSG00000164619|chr7:34055289-34055290|-/AAATAGAAATT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.261962890625	2	540.259879	1078.50521	1.9408	0.0010486	1.6675	0.00090089	3.6084	0.0019494	540.2606145781042	42.556	0.16984	42.556	42.486	42.656	0					16	9	2	0	0	0	0.57532	1	16104	16104		37.159	1.5408	1	72055			16423	305	10123	10172	16680	16680					-0.03090710103492711
HIRLTGAPL	9	Unmodified	_HIRLTGAPL_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7999267578125	2	489.298176	976.581799	-0.10239	-5.0101E-05	-0.38605	-0.0001889	-0.48845	-0.000239	489.29797029582176	26.483	0.27303	26.483	26.361	26.634	0					14	9	2	0	0	0	0.48623	1	8038	8038		34.173	0	1	54199			16424	4006	10124	10173	16681	16681					0.09257172779666689
HIRQHDVL	8	Unmodified	_HIRQHDVL_					0	0	0			REV__ZNF445|p.K976Sfs*50|1|0.19|ENSG00000185219|chr3:44446744-44446744|T/-|frameshift_variant	REV__ZNF445|p.K976Sfs*50|1|0.19|ENSG00000185219|chr3:44446744-44446744|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2829284667969	2	509.283057	1016.55156	-0.10607	-5.4022E-05	-0.19803	-0.00010085	-0.3041	-0.00015488	509.28304490262434	34.23	0.15233	34.23	34.153	34.305	0					9	6	2	0	0	0	0.7126	1	11183	11183		31.955	0	1	47358	+		16425	17012	10125	10174	16682	16682					0.043948141144596775
HIRRPLGWR	9	Unmodified	_HIRRPLGWR_					0	0	0			REV__ENSG00000186788|ENST00000445385|SPATA31D3	REV__ENSG00000186788|ENST00000445385|SPATA31D3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	595.8551635742188	2	595.854516	1189.69448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.967	1	14.967	14.467	15.467	0								0	0	0	0.39802	1	3169	3169		11.511	1.8054	1		+		16426	17090	10126	10175	16683	16683					0.10721866296353255
HIRRPMNAF	9	Unmodified	_HIRRPMNAF_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant;CIC|p.P518Rfs*5|2|0.37|ENSG00000079432|chr19:42290317-42290317|C/-|frameshift_variant;CIC|p.P509Hfs*14|2|0.27|ENSG00000079432|chr19:42290289-42290289|C/-|frameshift_variant;CIC|p.A785Pfs*139|1|0.34|ENSG00000079432|chr19:42291117-42291117|G/-|frameshift_variant;SOX17|p.R67H|1|0.27|ENSG00000164736|chr8:54458338-54458338|G/A|missense_variant	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.307861328125	2	571.30601	1140.59747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.314	1	45.314	44.814	45.814	0								0	0	0	0.27939	1	17544	17544		31.955	0	1				16427	1621	10127	10176	16684	16684					0.03279136025048501
HIRVGVVGLPN	11	Unmodified	_HIRVGVVGLPN_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.8493041992188	2	580.848564	1159.68258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.66	1	17.66	17.16	18.16	0								0	0	0	0.45674	1	4450	4450		19.104	0	1				16428	3620	10128	10177	16685	16685					0.10912204762530564
HISDVVLDK	9	Unmodified	_HISDVVLDK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2841796875	2	513.284931	1024.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.718	1	26.718	26.218	27.218	0								0	0	0	0.19847	1	9251	9251		51.193	7.0759	1				16429	2871	10129	10178	16686	16686					0.044014390976599316
HISTPLVSK	9	Unmodified	_HISTPLVSK_					0	0	0		nc|ENSG00000174516|Q8N2H9-4|PELI3;nc|ENSG00000174516|Q8N2H9-2|PELI3;ENSG00000174516|ENST00000320740|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.29010009765625	2	491.290017	980.565481	0.80438	0.00039518	-0.87395	-0.00042936	-0.069572	-3.418E-05	491.2895574613142	23.621	0.46171	23.621	23.318	23.78	0					20	9	3	0	0	0	0.16806	1	8027	8027		65.465	12.529	1	428610			16430	6495	10130	10179	16687	16687					0.07442046822916382
HITGAPHK	8	Unmodified	_HITGAPHK_					0	0	0			REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7402648925781	2	430.740494	859.466435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.824	1	17.824	17.324	18.324	0								0	0	0	1.7419	1	5362	5362		50.025	5.4935	1		+		16431	13684	10131	10180	16688	16688					0.03108068648657536
HITGAPHK	8	Unmodified	_HITGAPHK_					0	0	0			REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7403564453125	2	430.740494	859.466435	2.5317	0.0010905	-2.6968	-0.0011616	-0.16512	-7.1124E-05	430.7393129929285	17.809	0.2627	17.809	17.7	17.963	0					8	5	2	0	0	0	0.52345	1	5221	5221		57.811	24.296	1	483510	+		16432	13684	10131	10180	16689	16689					0.03108068648657536
HITSNYLKQI	10	Unmodified	_HITSNYLKQI_					0	0	0		DSTYK|p.L848Afs*3|1|0.28|ENSG00000133059|chr1:205148266-205148267|-/T|frameshift_variant;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	DSTYK|p.L848Afs*3|1|0.28|ENSG00000133059|chr1:205148266-205148267|-/T|frameshift_variant	DSTYK|p.L848Afs*3|1|0.28|ENSG00000133059|chr1:205148266-205148267|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.8340454101562	2	608.837862	1215.66117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.733	1	39.733	39.233	40.233	0								0	0	0	0.29806	1	15133	15133		51.193	8.3284	1				16433	856	10132	10181	16690	16690					0.06196774943123273
HITVGHETVM	10	Unmodified	_HITVGHETVM_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.281982421875	2	562.281866	1122.54918	1.8519	0.0010413	-2.2322	-0.0012551	-0.38032	-0.00021385	562.2807616267072	37.853	0.27162	37.853	37.747	38.018	0					16	9	3	0	0	0	0.61187	1	14846	14846		32.812	1.2826	1	122210			16434	3784	10133	10182	16691	16691					-0.007194024055024784
HKDECYIR	8	Unmodified	_HKDECYIR_					0	0	0			REV__IMPACT|p.Q230H|1|0.37|ENSG00000154059|chr18:24448114-24448114|G/T|missense_variant	REV__IMPACT|p.Q230H|1|0.37|ENSG00000154059|chr18:24448114-24448114|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2512817382812	2	532.253108	1062.49166	0.12429	6.6153E-05	-4.2884	-0.0022825	-4.1641	-0.0022164	532.2507981571215	13.86	0.16676	13.86	13.809	13.976	0					7	4	3	0	0	0	0.75323	1	3256	3256		26.693	4.733	1	141670	+		16435	20762	10134	10183	16692	16692					-0.037082446111071476
HKDSPKIEV	9	Unmodified	_HKDSPKIEV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7888793945312	2	526.790381	1051.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.647	1	35.647	35.147	36.147	0								0	0	0	0.24544	1	11681	11681		44.377	3.599	1		+		16436	15602;22247;21074	10135	10184	16693	16693					0.04248841471940068
HKHILAKNYF	10	Unmodified	_HKHILAKNYF_					0	0	0		ENSG00000164675|ENST00000324698|IQUB	ENSG00000164675|ENST00000324698|IQUB	ENSG00000164675|ENST00000324698|IQUB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	635.8541870117188	2	635.85639	1269.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.293	1	32.293	31.793	32.793	0								0	0	0	0.4201	1	12260	12260		20.947	0.10978	1				16437	5716	10136	10185	16694	16694					0.07416491279559523
HKHRLAIWL	9	Unmodified	_HKHRLAIWL_					0	0	0			REV__STXBP1|p.A297T|1|0.26|ENSG00000136854|chr9:127668174-127668174|G/A|missense_variant	REV__STXBP1|p.A297T|1|0.26|ENSG00000136854|chr9:127668174-127668174|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.9030456542969	3	391.90497	1172.69308	-1.2388	-0.00048548	-3.6224	-0.0014196	-4.8612	-0.0019051	391.9035499589652	20.757	0.14658	20.757	20.722	20.869	0					8	5	2	0	0	0	0.48389	1	5873	5873		34.173	2.1384	1	65064	+		16438	14882	10137	10186	16695	16695					0.11364232207574787
HKKKIQPR	8	Unmodified	_HKKKIQPR_					0	0	0		ENSG00000178804|ENST00000324382|H1-8	ENSG00000178804|ENST00000324382|H1-8	ENSG00000178804|ENST00000324382|H1-8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.5583190917969	3	345.55757	1033.65088	3.6396	0.0012577	-0.90547	-0.00031289	2.7341	0.00094479	345.55745545144293	28.474	0.20636	28.474	28.384	28.59	0					10	7	2	0	0	0	0.77246	1	9182	9182		24.203	2.2429	1	76068			16439	6730	10138	10187	16696	16696					0.13540256799205963
HKLWMIVI	8	Unmodified	_HKLWMIVI_					0	0	0		ADAM28|p.N75Tfs*53|1|0.31|ENSG00000042980|chr8:24309960-24309960|A/-|frameshift_variant;ADAM28|p.N75Kfs*54|1|0.14|ENSG00000042980|chr8:24309959-24309960|-/AA|frameshift_variant	ADAM28|p.N75Tfs*53|1|0.31|ENSG00000042980|chr8:24309960-24309960|A/-|frameshift_variant	ADAM28|p.N75Tfs*53|1|0.31|ENSG00000042980|chr8:24309960-24309960|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3115844726562	2	520.309698	1038.60484	1.685	0.0008767	0.98082	0.00051033	2.6658	0.001387	520.3101970410386	35.96	1.2632	35.96	35.706	36.97	0					120	37	5	0	0	0	0.68754	1	14274	14274		35.201	3.6709	1	99679000			16440	53	10139	10188	16697	16697					0.08708475572757379
HKNGETSL	8	Unmodified	_HKNGETSL_					0	0	0		MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant;MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant;MBD4|p.K313Rfs*13|2|0.15|ENSG00000129071|chr3:129436705-129436706|TT/-|frameshift_variant;nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant	MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2246398925781	2	443.224874	884.435195	-2.8731	-0.0012734	2.2799	0.0010105	-0.59322	-0.00026293	443.22589286845437	19.23	0.13689	19.23	19.138	19.274	0					6	3	2	0	0	0	0.34985	1	5191	5191		76.847	5.5509	1	227350			16441	11351	10140	10189	16698	16698					-0.01164549176098717
HKQKHKKQ	8	Unmodified	_HKQKHKKQ_					0	0	0		MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant;MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8248291015625	2	531.319974	1060.6254	0.1211	6.4345E-05	3.4239	0.0018192	3.545	0.0018835	531.3200090369795	16.116	0.35493	16.116	16.007	16.362	0					19	8	4	0	0	0	0.64096	1	4323	4323		42.474	8.3019	1	799560			16442	1602	10141	10190	16699	16699					0.09750782276796599
HKRARNTK	8	Unmodified	_HKRARNTK_					0	0	0			REV__ENSG00000182379|ENST00000349394|NXPH4	REV__ENSG00000182379|ENST00000349394|NXPH4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.8027648925781	2	505.801949	1009.58934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.524	1	38.524	38.024	39.024	0								0	0	0	1.7419	1	14645	14645		30.504	1.3541	1		+		16443	16883	10142	10191	16700	16700					0.08493325099925642
HKRIHTAE	8	Unmodified	_HKRIHTAE_					0	0	0		nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43;ZNF678|p.E457A|1|0.25|ENSG00000181450|chr1:227655620-227655620|A/C|missense_variant;ZNF676|p.A472T|1|0.3|ENSG00000196109|chr19:22180303-22180303|C/T|missense_variant;ZNF43|p.P481L|1|0.46|ENSG00000198521|chr19:21808595-21808595|G/A|missense_variant	nc|ENSG00000198521|P17038-2|ZNF43	nc|ENSG00000198521|P17038-2|ZNF43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.27685546875	2	496.275232	990.535912	-0.3614	-0.00017936	3.9599	0.0019652	3.5985	0.0017858	496.27730022733516	42.826	0.20607	42.826	42.622	42.828	0					14	9	2	0	0	0	0.64144	1	16201	16201		42.396	3.59	1	43503			16444	7572	10143	10192	16701	16701					0.04026527597397944
HKSVQHVVL	9	Unmodified	_HKSVQHVVL_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8087158203125	2	523.808908	1045.60326	0.032687	1.7122E-05	-1.309	-0.00068564	-1.2763	-0.00066852	523.8083053996951	39.852	0.17695	39.852	39.78	39.956	0					9	6	2	0	0	0	0.48389	1	15706	15706		34.173	2.2177	1	82410			16445	6163	10144	10193	16702	16702					0.08228557808365622
HKVRGWGLR	9	Unmodified	_HKVRGWGLR_					0	0	0		ENST00000478150.1_1_16:31045126-31045651:+|nuORF	ENST00000478150.1_1_16:31045126-31045651:+|nuORF	ENST00000478150.1_1_16:31045126-31045651:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.8278198242188	2	554.827966	1107.64138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.393	1	27.393	26.893	27.893	0								0	0	0	0.35899	1	8956	8956		23.042	2.0956	1				16446	9927	10145	10194	16703	16703					0.09186488513705626
HKYSSSPL	8	Unmodified	_HKYSSSPL_					0	0	0		nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	nc|ENSG00000130714|Q9Y6A1-4|POMT1	nc|ENSG00000130714|Q9Y6A1-4|POMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7360534667969	2	459.737617	917.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.031	1	15.031	14.531	15.531	0								0	0	0	1.7419	1	4028	4028		40.573	3.4135	1				16447	3662	10146	10195	16704	16704					-0.0013507465366728866
HLAEALIPQ	9	Unmodified	_HLAEALIPQ_					0	0	0			REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant	REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.28326416015625	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.922	1	14.922	14.422	15.422	0								0	0	0	0.32356	1	3314	3314		30.504	2.2494	1		+		16448	12325	10147	10196	16705	16705					0.054177603058633395
HLAISLGIAS	10	Unmodified	_HLAISLGIAS_					0	0	0			REV__nc|ENSG00000105220|P06744-2|GPI	REV__nc|ENSG00000105220|P06744-2|GPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.8623352050781	3	327.862437	980.565481	0.28819	9.4486E-05	-0.1293	-4.2391E-05	0.15889	5.2095E-05	327.8624760664841	27.75	0.11824	27.75	27.635	27.753	0					5	3	2	0	0	0	0.72821	1	8582	8582		11.636	0	1	59355	+	+	16449	20961	10148	10197	16706	16706					0.07442046822882276
HLAKCNTNTS	10	Unmodified	_HLAKCNTNTS_					0	0	0		CNGA3|p.P135H|1|0.28|ENSG00000144191|chr2:98383396-98383396|C/A|missense_variant	CNGA3|p.P135H|1|0.28|ENSG00000144191|chr2:98383396-98383396|C/A|missense_variant	CNGA3|p.P135H|1|0.28|ENSG00000144191|chr2:98383396-98383396|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.7645874023438	2	544.761297	1087.50804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.582	1	19.582	19.082	20.082	0								0	0	0	0.37129	1	5092	5092		39.253	3.6345	1				16450	569	10149	10198	16707	16707					-0.03221163444982267
HLARFKKR	8	Unmodified	_HLARFKKR_					0	0	0			REV__ENSG00000182916|ENST00000332431|TCEAL7	REV__ENSG00000182916|ENST00000332431|TCEAL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.3329467773438	2	528.332885	1054.65122	1.254	0.00066251	-1.4973	-0.00079109	-0.24338	-0.00012859	528.3320307188485	18.11	0.11453	18.11	18.05	18.165	0					4	2	2	0	0	0	0.72381	1	4674	4674		20.482	7.5226	1	192790	+		16451	16900	10150	10199	16708	16708					0.12607676519064626
HLATDEWA	8	Unmodified	_HLATDEWA_					0	0	0			REV__nc|ENSG00000087460|P84996|GNAS	REV__nc|ENSG00000087460|P84996|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.71923828125	2	471.719424	941.424296	-0.12381	-5.8402E-05	0.12653	5.9686E-05	0.0027215	1.2838E-06	471.7196793911565	29.089	0.2901	29.089	28.976	29.266	0					9	6	2	0	0	0	0.67475	1	10743	10743		37.028	5.0736	1	57390	+		16452	20947	10151	10200	16709	16709					-0.04875951550377522
HLCCRLVS	8	Unmodified	_HLCCRLVS_					0	0	0		ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.735107421875	2	465.73604	929.457527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.267	1	38.267	37.767	38.767	0								0	0	0	1.7419	1	15006	15006		28.254	1.4582	1				16453	10459	10152	10201	16710	16710					-0.010023643036674912
HLCSEKEMPS	10	Unmodified	_HLCSEKEMPS_					0	0	0			REV__ENST00000250489.8_1_14:20929623-20929770:-|nuORF	REV__ENST00000250489.8_1_14:20929623-20929770:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.7567138671875	2	580.757366	1159.50018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.827	1	29.827	29.327	30.327	0								0	0	0	0.37602	1	9444	9444		37.812	0	1		+		16454	17961	10153	10202	16711	16711					-0.07319058756752383
HLDGDRAF	8	Unmodified	_HLDGDRAF_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000541836.5_1_16:15021147-15029115:+|nuORF;ENST00000471603.6_1_16:2149506-2153410:-|nuORF;ENST00000532739.1_1_16:16465196-16470832:+|nuORF;ENST00000537112.5_1_16:16421763-16427707:+|nuORF;ENST00000480227.5_1_16:2149506-2153780:-|nuORF	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7249755859375	2	465.725041	929.435529	-0.8692	-0.00040481	0.35159	0.00016374	-0.51761	-0.00024107	465.72511487101855	23.561	0.16515	23.561	23.454	23.619	0					15	6	3	0	0	0	0.64096	1	7084	7084		42.474	3.6683	1	320190			16455	1020	10154	10203	16712	16712					-0.0320112945623805
HLDLPSVDQF	10	Unmodified	_HLDLPSVDQF_					0	0	0			REV__ENST00000509721.1_1_5:146257648-146464194:-|nuORF	REV__ENST00000509721.1_1_5:146257648-146464194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.7932739257812	2	585.793121	1169.57169	0.073179	4.2868E-05	0.63616	0.00037266	0.70934	0.00041553	585.7931672697802	40.49	0.12051	40.49	40.417	40.537	0					6	4	2	0	0	0	0.34667	1	15449	15449		62.107	1.9892	1	64594	+		16456	19861	10155	10204	16713	16713					-0.00631479736239271
HLEHPEQQ	8	Unmodified	_HLEHPEQQ_					0	0	0		ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2419738769531	2	509.241055	1016.46756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.03	1	33.03	32.53	33.53	0								0	0	0	1.7419	1	11065	11065		25.45	0.93098	1				16457	5537	10156	10205	16714	16714					-0.04001761773088219
HLESKQSLN	9	Unmodified	_HLESKQSLN_					0	0	0		MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant;nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant	MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2802124023438	2	528.277638	1054.54072	3.4669	0.0018315	0.59043	0.00031191	4.0573	0.0021434	528.2781741851635	43.686	0.3581	43.686	43.544	43.902	0					14	10	3	0	0	0	0.30951	1	17465	17465		49.442	1.5259	1	248970			16458	2702	10157	10206	16715	16715					0.01563366949540068
HLEVEPERTK	10	Unmodified	_HLEVEPERTK_					0	0	0			REV__nc|nan|Q8ND61-2|C3orf20	REV__nc|nan|Q8ND61-2|C3orf20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	619.32958984375	2	619.330402	1236.64625	0.17476	0.00010824	-1.3172	-0.00081578	-1.1424	-0.00070754	619.3296506665288	34.145	0.18048	34.145	34.085	34.265	0					10	7	2	0	0	0	0.56063	1	11140	11140		38.754	5.9412	1	87971	+		16459	14620	10158	10207	16716	16716					0.037392830751286965
HLEVEPERTK	10	Unmodified	_HLEVEPERTK_					0	0	0			REV__nc|nan|Q8ND61-2|C3orf20	REV__nc|nan|Q8ND61-2|C3orf20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	619.3297119140625	2	619.330402	1236.64625	-0.066628	-4.1265E-05	-0.9093	-0.00056316	-0.97593	-0.00060442	619.3296115166016	34.408	0.24959	34.408	34.323	34.573	0					14	6	3	0	0	0	0.4758	1	12822	12822		47.96	7.1814	1	631800	+		16460	14620	10158	10207	16717	16717					0.037392830751286965
HLFGPGKN	8	Unmodified	_HLFGPGKN_					0	0	0		TAF1L|p.S273Y|1|0.32|ENSG00000122728|chr9:32634762-32634762|G/T|missense_variant;TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant;TAF1L|p.F683Lfs*27|1|0.39|ENSG00000122728|chr9:32633531-32633531|A/-|frameshift_variant;TAF1L|p.A852Pfs*14|1|0.21|ENSG00000122728|chr9:32633027-32633027|T/-|frameshift_variant;TAF1L|p.F928Lfs*13|1|0.25|ENSG00000122728|chr9:32632796-32632796|A/-|frameshift_variant;TAF1L|p.E1124*|1|0.35|ENSG00000122728|chr9:32632210-32632211|-/A|frameshift_variant;TAF1L|p.F1231Lfs*20|1|0.42|ENSG00000122728|chr9:32631887-32631887|A/-|frameshift_variant;ENSG00000122728|ENST00000242310|TAF1L	TAF1L|p.S273Y|1|0.32|ENSG00000122728|chr9:32634762-32634762|G/T|missense_variant	TAF1L|p.S273Y|1|0.32|ENSG00000122728|chr9:32634762-32634762|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.23486328125	2	435.235045	868.455536	-0.27194	-0.00011836	-0.52273	-0.00022751	-0.79466	-0.00034587	435.2347313370487	24.432	0.14713	24.432	24.361	24.508	0					7	4	2	0	0	0	0.72892	1	7213	7213		29.842	3.0454	1	128890			16461	3285	10159	10208	16718	16718					0.01604666274374722
HLFKRHTE	8	Unmodified	_HLFKRHTE_					0	0	0			REV__ENST00000542053.5_1_9:95085743-95087590:-|nuORF	REV__ENST00000542053.5_1_9:95085743-95087590:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2930297851562	2	534.290882	1066.56721	0.15719	8.3988E-05	2.8756	0.0015364	3.0328	0.0016204	534.2922500909698	37.522	0.22271	37.522	37.415	37.638	0					10	6	2	0	0	0	0.67475	1	14222	14222		37.028	7.8789	1	139420	+		16462	18560	10160	10209	16719	16719					0.03659100631534784
HLFLMGKVI	9	Unmodified	_HLFLMGKVI_					0	0	0			REV__NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	REV__NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.3154296875	2	529.31498	1056.61541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.218	1	24.218	23.718	24.718	0								0	0	0	0.28164	1	8448	8448		38.806	0.99462	1		+		16463	16312	10161	10210	16720	16720					0.08936458227231014
HLFNGGKP	8	Unmodified	_HLFNGGKP_					0	0	0		ENST00000483414.1_1_7:73511493-73523492:+|nuORF	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2349853515625	2	435.235045	868.455536	-0.42769	-0.00018615	0.16134	7.0219E-05	-0.26636	-0.00011593	435.2351876017038	24.734	0.18355	24.734	24.602	24.786	0					10	4	3	0	0	0	0.68754	1	8352	8352		35.201	1.6851	1	918240			16464	9979	10162	10211	16721	16721					0.016046662743860907
HLFTLPGATP	10	Unmodified	_HLFTLPGATP_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2914428710938	2	527.290017	1052.56548	0.33299	0.00017558	0.63882	0.00033684	0.97181	0.00051243	527.2903736359791	37.321	0.2584	37.321	37.226	37.484	0					33	14	3	0	0	0	0.63073	1	12604	12604		30.504	3.7075	1	453970			16465	11590	10163	10212	16722	16722					0.04130046822888289
HLGALLAR	8	Unmodified	_HLGALLAR_					0	0	0		ENSG00000187094|ENST00000396169|CCK;ENST00000484359.1_1_3:42304789-42306234:-|nuORF	ENSG00000187094|ENST00000396169|CCK	ENSG00000187094|ENST00000396169|CCK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.7666931152344	2	425.766512	849.518471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.865	1	26.865	26.365	27.365	0								0	0	0	1.7419	1	8496	8496		74.517	0	1				16466	7179	10164	10213	16723	16723					0.08769232062422816
HLGALLAR	8	Unmodified	_HLGALLAR_					0	0	0		ENSG00000187094|ENST00000396169|CCK;ENST00000484359.1_1_3:42304789-42306234:-|nuORF	ENSG00000187094|ENST00000396169|CCK	ENSG00000187094|ENST00000396169|CCK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.766357421875	2	425.766512	849.518471	-0.3959	-0.00016856	0.29853	0.0001271	-0.097376	-4.1459E-05	425.7665754850189	27.13	0.16361	27.13	27.023	27.186	0					8	3	3	0	0	0	0.64096	1	9805	9805		42.474	0	1	169700			16467	7179	10164	10213	16724	16724					0.08769232062422816
HLGLPGARG	9	Unmodified	_HLGLPGARG_					0	0	0		ENSG00000197768|ENST00000412566|STPG3;nc|ENSG00000197768|Q8N7X2|STPG3;nc|ENSG00000197768|Q8N7X2-1|STPG3	ENSG00000197768|ENST00000412566|STPG3	ENSG00000197768|ENST00000412566|STPG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2527160644531	2	439.253769	876.492984	-0.28245	-0.00012407	-1.8063	-0.00079342	-2.0887	-0.00091749	439.25298668197655	25.407	0.19811	25.407	25.326	25.524	0					12	8	2	0	0	0	0.61124	1	7626	7626		20.482	1.1219	1	77283			16468	7496	10165	10214	16725	16725					0.04979757540002083
HLGRFARE	8	Unmodified	_HLGRFARE_					0	0	0			REV__ENSG00000040608|ENST00000043402|RTN4R	REV__ENSG00000040608|ENST00000043402|RTN4R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2689208984375	2	493.26995	984.525347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.61	1	19.61	19.11	20.11	0								0	0	0	1.7419	1	6228	6228		31.955	0	1		+		16469	12997	10166	10215	16726	16726					0.03246544942987839
HLHAMAFY	8	Unmodified	_HLHAMAFY_					0	0	0		ENST00000481564.1_1_7:23338971-23340720:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1	ENST00000481564.1_1_7:23338971-23340720:+|nuORF	ENST00000481564.1_1_7:23338971-23340720:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2376403808594	2	495.23673	988.458907	0.92998	0.00046056	1.1552	0.00057208	2.0851	0.0010326	495.2371562900818	29.901	0.3175	29.901	29.781	30.099	0					11	6	3	0	0	0	0.70073	1	11039	11039		33.493	2.9893	1	404880			16470	5188	10167	10216	16727	16727					-0.03578406943279333
HLHAMMAQL	9	Oxidation (M)	_HLHAM(Oxidation (M))MAQL_		HLHAM(0.5)M(0.5)AQL		HLHAM(0)M(0)AQL	0	0	1			REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4	REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2598266601562	2	534.259879	1066.50521	0.1556	8.3133E-05	-0.29689	-0.00015862	-0.14128	-7.5483E-05	534.2597677187299	25.661	0.13079	25.661	25.573	25.704	0					6	3	2	0	0	0	0.32741	1	8804	8804		47.916	13.994	2	333520	+		16471	14905	10168	10217	16728	16728		562;563			-0.025387101034993975
HLIHNARHQE	10	Unmodified	_HLIHNARHQE_					0	0	0			REV__NSMAF|p.R751Dfs*16|1|0.2|ENSG00000035681|chr8:58587662-58587662|T/-|frameshift_variant	REV__NSMAF|p.R751Dfs*16|1|0.2|ENSG00000035681|chr8:58587662-58587662|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.2197265625	3	418.886527	1253.63775	0.44492	0.00018637	-2.8552	-0.001196	-2.4102	-0.0010096	419.2193276792672	20.087	0.10847	20.087	20.033	20.142	0					4	2	2	0	0	0	0.69544	1	6184	6184		22.58	0.89391	1	66444	+		16472	12982	10169	10218	16729	16729					0.02107773949182956
HLLARAVA	8	Unmodified	_HLLARAVA_					0	0	0		nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;POMT1|p.L421*|1|0.41|ENSG00000130714|chr9:131515440-131515440|C/-|frameshift_variant;ENST00000462375.5_1_9:134385592-134386855:+|nuORF	nc|ENSG00000130714|Q9Y6A1-4|POMT1	nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.766357421875	2	425.766512	849.518471	-0.38537	-0.00016408	0.029671	1.2633E-05	-0.3557	-0.00015144	425.7664722931357	27.075	0.16863	27.075	27.002	27.17	0					7	3	3	0	0	0	0.8006	1	9652	9652		20.482	0	1	216380			16473	3662	10170	10219	16730	16730					0.08769232062422816
HLLNLKAE	8	Unmodified	_HLLNLKAE_					0	0	0			REV__ENSG00000169918|ENST00000307050|OTUD7A	REV__ENSG00000169918|ENST00000307050|OTUD7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2766418457031	2	469.276909	936.539266	0.23147	0.00010862	-0.7489	-0.00035144	-0.51743	-0.00024282	469.27655343786785	25.548	0.7271	25.548	25.242	25.969	0					40	15	4	0	0	0	0.37144	1	8710	8710		74.255	0	1	5938100	+		16474	16343	10171	10220	16731	16731					0.06845777651415119
HLLNLKAE	8	Unmodified	_HLLNLKAE_					0	0	0			REV__ENSG00000169918|ENST00000307050|OTUD7A	REV__ENSG00000169918|ENST00000307050|OTUD7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.27691650390625	2	469.276909	936.539266	-1.1837	-0.00055547	0.61714	0.00028961	-0.56654	-0.00026586	469.2772339764398	25.287	0.2772	25.287	25.158	25.435	0					20	9	3	0	0	0	0.46013	1	7830	7830		64.207	0	1	236520	+		16475	16343	10171	10220	16732	16732					0.06845777651415119
HLLNLKAE	8	Unmodified	_HLLNLKAE_					0	0	0			REV__ENSG00000169918|ENST00000307050|OTUD7A	REV__ENSG00000169918|ENST00000307050|OTUD7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.27667236328125	2	469.276909	936.539266	0.62139	0.00029161	-1.2699	-0.00059594	-0.64851	-0.00030433	469.2764939803045	25.501	0.8961	25.501	25.138	26.034	0					38	16	5	0	0	0	0.28427	1	9070	9070		87.754	5.4493	1	1567700	+		16476	16343	10171	10220	16733	16733					0.06845777651415119
HLLNLKAE	8	Unmodified	_HLLNLKAE_					0	0	0			REV__ENSG00000169918|ENST00000307050|OTUD7A	REV__ENSG00000169918|ENST00000307050|OTUD7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.27655029296875	2	469.276909	936.539266	-0.21659	-0.00010164	-0.15924	-7.4726E-05	-0.37583	-0.00017637	469.2768812540665	25.365	0.32155	25.365	25.182	25.503	0					15	7	3	0	0	0	0.37144	1	8021	8021		74.255	0	1	678710	+		16477	16343	10171	10220	16734	16734					0.06845777651415119
HLLNLKAE	8	Unmodified	_HLLNLKAE_					0	0	0			REV__ENSG00000169918|ENST00000307050|OTUD7A	REV__ENSG00000169918|ENST00000307050|OTUD7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.276611328125	2	469.276909	936.539266	-0.66269	-0.00031099	0.13114	6.1542E-05	-0.53155	-0.00024944	469.2770307571568	25.349	0.2774	25.349	25.21	25.488	0					18	6	4	0	0	0	0.43813	1	8014	8014		66.429	5.4573	1	876640	+		16478	16343	10171	10220	16735	16735					0.06845777651415119
HLLTERNEV	9	Unmodified	_HLLTERNEV_					0	0	0		nc|ENSG00000114529|Q5BVD1-3|TTMP	nc|ENSG00000114529|Q5BVD1-3|TTMP	nc|ENSG00000114529|Q5BVD1-3|TTMP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7980346679688	2	555.798737	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.728	1	36.728	36.228	37.228	0								0	0	0	0.1836	1	14324	14324		53.351	5.6941	1				16479	11489	10172	10221	16736	16736					0.03251342357907561
HLNPMQLM	8	Oxidation (M)	_HLNPMQLM(Oxidation (M))_		HLNPM(0.104)QLM(0.896)		HLNPM(-9.3)QLM(9.3)	0	0	1		nc|ENSG00000136715|Q9H0E3-2|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant;nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2427062988281	2	500.241155	998.467757	2.9193	0.0014604	1.2125	0.00060654	4.1318	0.0020669	500.2417882828363	42.881	0.12663	42.881	42.802	42.928	0					7	4	2	0	0	0	0.6282	1	17139	17139		44.531	9.3304	2	38788			16480	4100	10173	10222	16737	16737		168			-0.0315380136909198
HLNSDKLI	8	Unmodified	_HLNSDKLI_					0	0	0		DNA2|p.E1036D|1|0.22|ENSG00000138346|chr10:68416715-68416715|T/G|missense_variant	DNA2|p.E1036D|1|0.22|ENSG00000138346|chr10:68416715-68416715|T/G|missense_variant	DNA2|p.E1036D|1|0.22|ENSG00000138346|chr10:68416715-68416715|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.26611328125	2	470.266542	938.51853	0.17274	8.1234E-05	-0.7263	-0.00034156	-0.55356	-0.00026032	470.2662589536135	32.385	0.29223	32.385	32.262	32.555	0					14	7	3	0	0	0	0.65148	1	11879	11879		40.778	6.6056	1	397510			16481	810	10174	10223	16738	16738					0.0468118727176261
HLPETKFSEL	10	Unmodified	_HLPETKFSEL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.8170166015625	2	600.816596	1199.61864	2.1372	0.0012841	-1.5904	-0.00095556	0.54674	0.00032849	600.8154691766207	34.045	0.30482	34.045	33.94	34.245	0					13	6	3	0	0	0	0.4287	1	13022	13022		53.089	7.137	1	577950			16482	2732	10175	10224	16739	16739					0.02681379814907814
HLPGAPSP	8	Unmodified	_HLPGAPSP_					0	0	0			REV__ENSG00000092067|ENST00000206513|CEBPE	REV__ENSG00000092067|ENST00000206513|CEBPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.20843505859375	2	388.208495	774.402438	0.44082	0.00017113	-0.46529	-0.00018063	-0.024466	-9.4981E-06	388.20827530613894	15.66	0.16852	15.66	15.55	15.719	0					6	3	2	0	0	0	0.78216	1	4339	4339		8.8223	0	1	267780	+		16483	13448	10176	10225	16740	16740					0.0062128849172040645
HLPGHSAQKP	10	Unmodified	_HLPGHSAQKP_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2896728515625	2	536.28834	1070.56213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.915	1	39.915	39.415	40.415	0								0	0	0	0.38322	1	15810	15810		35.618	1.4457	1				16484	11445	10177	10226	16741	16741					0.02966796768896529
HLPGVRQR	8	Unmodified	_HLPGVRQR_					0	0	0		nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.78668212890625	2	481.785767	961.556982	0.54972	0.00026485	-1.7439	-0.00084017	-1.1941	-0.00057532	481.78641057771455	34.823	0.27425	34.823	34.731	35.005	0					18	7	3	0	0	0	0.68754	1	13028	13028		35.201	6.9464	1	516340			16485	5835	10178	10227	16742	16742					0.07466537696939213
HLPLAAPFGA	10	Unmodified	_HLPLAAPFGA_					0	0	0			REV__ENST00000253506.9_1_18:77170886-77171015:+|nuORF	REV__ENST00000253506.9_1_18:77170886-77171015:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.277587890625	2	497.279452	992.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.325	1	20.325	19.825	20.825	0								0	0	0	0.41219	1	5420	5420		26.796	1.3459	1		+		16486	17973	10179	10228	16743	16743					0.047780815140413324
HLPSGVKSL	9	Unmodified	_HLPSGVKSL_					0	0	0		nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.276611328125	2	469.276909	936.539266	-0.12642	-5.9327E-05	-0.80074	-0.00037577	-0.92716	-0.0004351	469.2765087271661	25.511	0.69298	25.511	25.307	26	0					22	12	2	0	0	0	0.11898	1	9028	9028		75.043	5.4157	1	5574400			16487	5524	10180	10229	16744	16744					0.06845777651415119
HLPSGVKSL	9	Unmodified	_HLPSGVKSL_					0	0	0		nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.27655029296875	2	469.276909	936.539266	-0.52382	-0.00024582	-0.14087	-6.6105E-05	-0.66469	-0.00031192	469.2767864981019	25.471	0.70235	25.471	25.213	25.915	0					33	12	4	0	0	0	0.15163	1	8862	8862		67.494	3.2864	1	6514700			16488	5524	10180	10229	16745	16745					0.06845777651415119
HLPVGAPQ	8	Unmodified	_HLPVGAPQ_					0	0	0		nc|ENSG00000106852|Q9UPM6-2|LHX6;nc|ENSG00000106852|Q9UPM6-5|LHX6;nc|ENSG00000106852|Q9UPM6-4|LHX6	nc|ENSG00000106852|Q9UPM6-2|LHX6	nc|ENSG00000106852|Q9UPM6-2|LHX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.7295837402344	2	409.729595	817.444637	-2.2982	-0.00094163	2.1859	0.00089563	-0.11228	-4.6006E-05	409.730486562808	16.543	0.13202	16.543	16.463	16.595	0					6	3	2	0	0	0	0.67475	1	3940	3940		37.028	0	1	177810			16489	11473	10181	10230	16746	16746					0.02861263900092581
HLQKGKAPA	9	Unmodified	_HLQKGKAPA_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.28253173828125	2	475.282526	948.550499	0.63474	0.00030168	-1.1232	-0.00053385	-0.48848	-0.00023217	475.28203191349616	26.555	0.3178	26.555	26.34	26.657	0					11	7	2	0	0	0	0.43426	1	9165	9165		38.806	6.8513	1	135160			16490	6556	10182	10231	16747	16747					0.07416599745567964
HLQRVSLPR	9	Unmodified	_HLQRVSLPR_					0	0	0		nc|ENSG00000175164|P16442|ABO;ENSG00000175164|ENST00000538324|ABO	nc|ENSG00000175164|P16442|ABO	nc|ENSG00000175164|P16442|ABO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.3316650390625	2	553.333082	1104.65161	0.13968	7.729E-05	-0.50221	-0.00027789	-0.36252	-0.0002006	553.3325871774405	54.239	0.21217	54.239	54.157	54.37	0					18	13	2	0	0	0	0.61124	1	19697	19697		12.207	1.3413	1	77492			16491	6535	10183	10232	16748	16748					0.10347051448275124
HLQSKKTF	8	Unmodified	_HLQSKKTF_					0	0	0			REV__nc|ENSG00000147124|P51814-4|ZNF41	REV__nc|ENSG00000147124|P51814-4|ZNF41	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1907043457031	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.031	1	52.031	51.531	52.531	0								0	0	0	1.7419	1	18517	18517		27.882	2.3082	1		+		16492	15332	10184	10233	16749	16749					0.055891800257199975
HLQTITLDN	9	Unmodified	_HLQTITLDN_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.18896484375	3	352.189101	1053.54547	0.70462	0.00024816	-0.92765	-0.00032671	-0.22303	-7.855E-05	352.1887570442162	15.414	0.13418	15.414	15.328	15.462	0					6	3	2	0	0	0	0.44593	1	3985	3985		30.569	0	1	2276500			16493	7119	10185	10234	16750	16750					0.020842510923102964
HLQTVRVP	8	Unmodified	_HLQTVRVP_					0	0	0		ENST00000527238.5_1_11:125109512-125201761:+|nuORF	ENST00000527238.5_1_11:125109512-125201761:+|nuORF	ENST00000527238.5_1_11:125109512-125201761:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2821044921875	2	475.282526	948.550499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.563	1	26.563	26.063	27.063	0								0	0	0	1.7419	1	9522	9522		31.955	1.4512	1				16494	10385	10186	10235	16751	16751					0.07416599745567964
HLRAQDLH	8	Unmodified	_HLRAQDLH_					0	0	0		ENST00000474124.5_1_9:130886092-130889945:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000474124.5_1_9:130886092-130889945:-|nuORF	ENST00000474124.5_1_9:130886092-130889945:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2672119140625	2	495.267407	988.520262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.666	1	15.666	15.166	16.166	0								0	0	0	1.7419	1	4328	4328		33.516	1.5607	1				16495	4822	10187	10236	16752	16752					0.025542410803609528
HLRQRVLQ	8	Unmodified	_HLRQRVLQ_					0	0	0		nc|ENSG00000153266|Q8TBJ5-2|FEZF2	nc|ENSG00000153266|Q8TBJ5-2|FEZF2	nc|ENSG00000153266|Q8TBJ5-2|FEZF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.3200073242188	2	525.319974	1048.6254	1.1684	0.0006138	-0.62779	-0.00032979	0.54065	0.00028401	525.3188983893135	30.123	0.16707	30.123	30.062	30.229	0					6	4	2	0	0	0	0.74117	1	10245	10245		28.254	1.4582	1	82852			16496	11588	10188	10237	16753	16753					0.1030278227681265
HLSASVNSY	9	Unmodified	_HLSASVNSY_					0	0	0		nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.238037109375	2	489.237981	976.461409	-0.71482	-0.00034972	0.59383	0.00029052	-0.12099	-5.9192E-05	489.2383429490841	23.987	0.11407	23.987	23.931	24.045	0					4	2	2	0	0	0	0.39215	1	8351	8351		42.396	1.618	1	94897			16497	11545	10189	10238	16754	16754					-0.02776280004616183
HLSGTAIAIV	10	Unmodified	_HLSGTAIAIV_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.28985595703125	2	491.290017	980.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.391	1	23.391	22.891	23.891	0								0	0	0	0.29716	1	7022	7022		51.335	14.176	1		+		16498	14525	10190	10239	16755	16755					0.07442046822882276
HLSLKSWAQ	9	Unmodified	_HLSLKSWAQ_					0	0	0		nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2;nc|ENSG00000169247|Q8TF17-4|SH3TC2;ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF	nc|ENSG00000169247|Q8TF17-5|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2926635742188	2	535.293091	1068.57163	2.2174	0.001187	-1.6091	-0.00086133	0.60831	0.00032563	535.2919396438565	31.23	0.50342	31.23	31.08	31.584	0					21	12	2	0	0	0	0.34452	1	11335	11335		31.53	0	1	186390			16499	6156	10191	10240	16756	16756					0.04008565054414248
HLSLTDFCFS	10	Unmodified	_HLSLTDFCFS_					0	0	0		ENSG00000279761|ENST00000623930|OR5D13	ENSG00000279761|ENST00000623930|OR5D13	ENSG00000279761|ENST00000623930|OR5D13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.2686157226562	2	585.268424	1168.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.023	1	14.023	13.523	14.523	0								0	0	0	0.37129	1	3547	3547		39.253	15.05	1				16500	8128	10192	10241	16757	16757					-0.05522511016692988
HLSSALRIQ	9	Unmodified	_HLSSALRIQ_					0	0	0		ENST00000575325.1_1_18:50073-73351:-|nuORF	ENST00000575325.1_1_18:50073-73351:-|nuORF	ENST00000575325.1_1_18:50073-73351:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.798583984375	2	512.79854	1023.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.961	1	16.961	16.461	17.461	0								0	0	0	0.33029	1	4131	4131		37.159	8.0096	1				16501	10823	10193	10242	16758	16758					0.07167967428711108
HLVAVFNEY	9	Unmodified	_HLVAVFNEY_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2801513671875	2	546.279649	1090.54475	1.9246	0.0010514	1.0981	0.00059988	3.0227	0.0016513	546.2797611275597	42.221	0.39408	42.221	42.024	42.418	0					13	10	2	0	0	0	0.13267	1	16824	16824		71.877	3.3928	1	99464			16502	3260	10194	10243	16759	16759					0.003094564432331026
HLVGAVVR	8	Unmodified	_HLVGAVVR_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.7662048339844	2	425.766512	849.518471	0.2977	0.00012675	-0.84675	-0.00036052	-0.54905	-0.00023377	425.76614805893774	26.852	0.19512	26.852	26.792	26.987	0					10	6	2	0	0	0	0.68754	1	8207	8207		35.201	0	1	58934	+		16503	17274	10195	10244	16760	16760					0.08769232062434185
HLVIETEQ	8	Unmodified	_HLVIETEQ_					0	0	0			REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7559509277344	2	484.756007	967.497461	-0.09338	-4.5266E-05	-0.94785	-0.00045948	-1.0412	-0.00050474	484.75593297649215	28.441	0.1675	28.441	28.331	28.499	0					5	3	2	0	0	0	0.70055	1	10432	10432		33.516	0.76505	1	126410	+		16504	21774	10196	10245	16761	16761					0.012411771722327103
HLYFAQVV	8	Unmodified	_HLYFAQVV_					0	0	0		GPR137|p.N114H|1|0.15|ENSG00000173264|chr11:64286864-64286864|A/C|missense_variant	GPR137|p.N114H|1|0.15|ENSG00000173264|chr11:64286864-64286864|A/C|missense_variant	GPR137|p.N114H|1|0.15|ENSG00000173264|chr11:64286864-64286864|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7679138183594	2	488.766178	975.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.012	1	21.012	20.512	21.512	0								0	0	0	1.7419	1	6612	6612		46.766	0	1				16505	11160	10197	10246	16762	16762					0.029063926227081538
HLYLMGTIIQ	10	Unmodified	_HLYLMGTIIQ_					0	0	0			REV__nc|ENSG00000142731|O00444-3|PLK4	REV__nc|ENSG00000142731|O00444-3|PLK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8279418945312	2	594.825909	1187.63727	3.1708	0.0018861	0.34013	0.00020232	3.511	0.0020884	594.8261777564225	14.129	0.31746	14.129	14.073	14.391	0					15	6	4	0	0	0	0.12763	1	3459	3459		68.787	19.345	1	1089400	+		16506	15158	10198	10247	16763	16763					0.05095218185124395
HMATCGNVLFE	11	Unmodified	_HMATCGNVLFE_					0	0	0		AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant	AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.2732543945312	2	611.273183	1220.53181	-0.77327	-0.00047268	0.2476	0.00015135	-0.52567	-0.00032133	611.2732752114425	31.755	0.25889	31.755	31.64	31.899	0					13	6	3	0	0	0	0.25663	1	11587	11587		67.494	12.771	1	514580			16507	96	10199	10248	16764	16764					-0.06963066002822416
HMLAAIHTTK	10	Unmodified	_HMLAAIHTTK_					0	0	0			REV__NSUN6|p.F459Lfs*6|3|0.4|ENSG00000241058|chr10:18545966-18545966|A/-|frameshift_variant	REV__NSUN6|p.F459Lfs*6|3|0.4|ENSG00000241058|chr10:18545966-18545966|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.8095703125	2	561.808051	1121.60155	3.4702	0.0019496	-0.4248	-0.00023866	3.0454	0.0017109	561.8077917570303	15.343	0.16481	15.343	15.28	15.445	0					12	3	5	0	0	0	0.357	1	4031	4031		60.972	0.85368	1	2841300	+		16508	17685	10200	10249	16765	16765					0.0456118072809204
HMTNKNASYF	10	Unmodified	_HMTNKNASYF_					0	0	0			REV__ENST00000495160.2_3_3:57234031-57260394:-|nuORF	REV__ENST00000495160.2_3_3:57234031-57260394:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	606.8693237304688	2	606.776948	1211.53934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.948	1	13.948	13.448	14.448	0								0	0	0	0.33107	1	3291	3291		45.972	1.5951	1		+		16509	19758	10201	10250	16766	16766					-0.057965904108868926
HMTSLKEY	8	Oxidation (M)	_HM(Oxidation (M))TSLKEY_		HM(1)TSLKEY		HM(50)TSLKEY	0	0	1			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2482299804688	2	512.742042	1023.46953	1.2688	0.00065055	-0.75222	-0.0003857	0.51655	0.00026486	512.7400042970004	36.588	0.42405	36.588	36.385	36.809	0					23	12	2	0	0	0	0.59411	1	14312	14312		50.025	9.2464	1	229600	+		16510	15336	10202	10251	16767	16767		590			-0.041264690794946546
HNAEDDFGW	9	Unmodified	_HNAEDDFGW_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7138671875	2	545.71487	1089.41519	1.1949	0.00065205	-1.9751	-0.0010779	-0.78027	-0.00042581	545.7135943534329	14.931	0.059733	14.931	14.893	14.953	0					4	2	2	0	0	0	0.61124	1	3154	3154		11.511	2.6887	1	44646	+		16511	15450	10203	10252	16768	16768					-0.1259434490671083
HNAEDDFGW	9	Unmodified	_HNAEDDFGW_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7138061523438	2	545.71487	1089.41519	0.40957	0.00022351	-2.1046	-0.0011485	-1.695	-0.000925	545.7135926245383	15.198	0.18156	15.198	15.101	15.283	0					8	4	3	0	0	0	0.43426	1	3884	3884		38.806	12.113	1	909490	+		16512	15450	10203	10252	16769	16769					-0.1259434490671083
HNGCKMLV	8	Unmodified	_HNGCKMLV_					0	0	0			REV__MAPK8|p.V80G|1|0.07|ENSG00000107643|chr10:48404968-48404968|T/G|missense_variant	REV__MAPK8|p.V80G|1|0.07|ENSG00000107643|chr10:48404968-48404968|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.22418212890625	2	451.222765	900.430978	2.5313	0.0011422	0.60755	0.00027414	3.1388	0.0014163	451.22298360506227	28.884	0.85818	28.884	28.724	29.583	0					30	17	4	0	0	0	0.74117	1	10503	10503		28.254	28.254	1	2711700	+		16513	20865	10204	10253	16770	16770					-0.023220531950073564
HNGCTGAI	8	Unmodified	_HNGCTGAI_					0	0	0			REV__ENSG00000163376|ENST00000417314|KBTBD8	REV__ENSG00000163376|ENST00000417314|KBTBD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.6744384765625	2	386.673963	771.333372	-0.0030808	-1.1913E-06	1.6897	0.00065338	1.6867	0.00065219	386.6745735464754	27.007	0.25183	27.007	26.875	27.127	0					10	6	2	0	0	0	0.65276	1	9394	9394		40.573	1.7665	1	224590	+		16514	15878	10205	10254	16771	16771					-0.0614411879950012
HNGLATYANG	10	Unmodified	_HNGLATYANG_					0	0	0			REV__GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	REV__GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2415466308594	2	509.241055	1016.46756	0.22838	0.0001163	-1.5068	-0.00076731	-1.2784	-0.000651	509.24066349883356	26.142	2.7118	26.142	25.983	28.695	0					99	55	4	0	0	0	0.44469	1	9355	9355		51.335	17.163	1	6271100	+		16515	14322	10206	10255	16772	16772					-0.04001761773099588
HNNIKLLE	8	Unmodified	_HNNIKLLE_					0	0	0		ITPR2|p.R603I|1|0.26|ENSG00000123104|chr12:26659191-26659191|C/A|missense_variant	ITPR2|p.R603I|1|0.26|ENSG00000123104|chr12:26659191-26659191|C/A|missense_variant	ITPR2|p.R603I|1|0.26|ENSG00000123104|chr12:26659191-26659191|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7799987792969	2	490.779816	979.545079	-2.7539	-0.0013515	3.2925	0.0016159	0.5386	0.00026434	490.7813058930553	21.525	0.24356	21.525	21.329	21.572	0					10	5	3	0	0	0	0.7126	1	6267	6267		31.955	2.8053	1	134250			16516	11235	10207	10256	16773	16773					0.05448876163097793
HNPEPTKSF	9	Unmodified	_HNPEPTKSF_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7581176757812	2	528.759081	1055.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.362	1	28.362	27.862	28.862	0								0	0	0	0.32356	1	9404	9404		30.504	6.3009	1				16517	4437	10208	10257	16774	16774					-0.021923045962239485
HNTQLETTS	9	Unmodified	_HNTQLETTS_					0	0	0			REV__ENST00000446198.5_1_7:131188931-131189063:-|nuORF	REV__ENST00000446198.5_1_7:131188931-131189063:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.74560546875	2	515.743628	1029.4727	3.2593	0.0016809	0.64328	0.00033177	3.9026	0.0020127	515.7439525194644	36.6	0.31617	36.6	36.445	36.761	0					15	6	3	0	0	0	0.37197	1	14228	14228		44.117	44.117	1	863110	+		16518	19280	10209	10258	16775	16775					-0.0408550270115029
HNYHTRSAL	9	Unmodified	_HNYHTRSAL_					0	0	0		PHIP|p.R797H|1|0.39|ENSG00000146247|chr6:78988279-78988279|C/T|missense_variant	PHIP|p.R797H|1|0.39|ENSG00000146247|chr6:78988279-78988279|C/T|missense_variant	PHIP|p.R797H|1|0.39|ENSG00000146247|chr6:78988279-78988279|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.776611328125	2	549.775597	1097.53664	0.3456	0.00019	1.9373	0.0010651	2.2829	0.0012551	549.7766996885888	36.918	0.13788	36.918	36.852	36.99	0					10	7	2	0	0	0	0.42902	1	12495	12495		39.253	1.7447	1	46431			16519	11929	10210	10259	16776	16776					-0.008226777535355723
HPAAKMIVM	9	Unmodified	_HPAAKMIVM_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.26959228515625	2	499.269716	996.524878	1.5745	0.00078612	-1.8015	-0.00089943	-0.22695	-0.00011331	499.2696194482845	27.423	0.15117	27.423	27.307	27.458	0					10	5	3	0	0	0	0.5654	1	8451	8451		25.45	4.9683	1	36914			16520	5164	10211	10260	16777	16777					0.026476659072841358
HPAAKMIVM	9	Unmodified	_HPAAKMIVM_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.26959228515625	2	499.269716	996.524878	0.57891	0.00028903	-1.0792	-0.00053882	-0.50031	-0.00024979	499.26944338790923	27.667	0.30666	27.667	27.556	27.862	0					20	7	4	0	0	0	0.23186	1	9670	9670		57.811	27.308	1	363000			16521	5164	10211	10260	16778	16778					0.026476659072841358
HPAELYRAL	9	Unmodified	_HPAELYRAL_					0	0	0		ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2935180664062	2	535.293091	1068.57163	1.8742	0.0010032	-0.3397	-0.00018184	1.5345	0.00082139	535.292792370914	28.649	0.31845	28.649	28.542	28.86	0					12	6	2	0	0	0	0.24334	1	10419	10419		49.442	10.189	1	501040			16522	5426	10212	10261	16779	16779					0.04008565054414248
HPAENGKSNF	10	Unmodified	_HPAENGKSNF_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7599487304688	2	550.759612	1099.50467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.535	1	16.535	16.035	17.035	0								0	0	0	0.060762	1	4500	4500		88.177	3.2614	1				16523	266;267	10213	10262	16780	16780					-0.04110090227322871
HPAENGKSNF	10	Unmodified	_HPAENGKSNF_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.7604370117188	2	550.759612	1099.50467	4.6159	0.0025423	-4.1378	-0.0022789	0.47812	0.00026333	550.7581238616339	16.273	0.11749	16.273	16.223	16.34	0					9	4	3	0	0	0	0.38194	1	3879	3879		58.23	15.834	1	84827			16524	266;267	10213	10262	16781	16781					-0.04110090227322871
HPAENGKSNF	10	Unmodified	_HPAENGKSNF_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.261962890625	2	550.759612	1099.50467	0.43153	0.00023767	-2.7424	-0.0015104	-2.3109	-0.0012727	550.7596250002742	16.489	0.31639	16.489	16.38	16.696	0					15	6	3	0	0	0	0.19191	1	4712	4712		80.455	18.347	1	755340			16525	266;267	10213	10262	16782	16782					-0.04110090227322871
HPAENGKSNF	10	Unmodified	_HPAENGKSNF_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.V69Sfs*21|1|0.67|ENSG00000166710|chr15:44715554-44715555|-/A|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant;B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.76025390625	2	550.759612	1099.50467	0.65003	0.00035801	0.30012	0.00016529	0.95015	0.0005233	550.7598457703066	16.506	0.31273	16.506	16.401	16.714	0					11	6	3	0	0	0	0.28036	1	4594	4594		69.628	28.849	1	509480			16526	266;267	10213	10262	16783	16783					-0.04110090227322871
HPAIGLNE	8	Unmodified	_HPAIGLNE_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.72430419921875	2	425.72451	849.434466	0.2987	0.00012716	-0.59465	-0.00025316	-0.29595	-0.00012599	425.72426144329165	22.86	0.19926	22.86	22.754	22.953	0					10	6	2	0	0	0	0.68754	1	6521	6521		35.201	6.0512	1	179350	+		16527	17420	10214	10263	16784	16784					0.003726561748521817
HPALSNRAAL	10	Unmodified	_HPALSNRAAL_					0	0	0		ENST00000469556.1_1_1:24122614-24123094:-|nuORF	ENST00000469556.1_1_1:24122614-24123094:-|nuORF	ENST00000469556.1_1_1:24122614-24123094:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2979125976562	2	525.296165	1048.57778	3.4441	0.0018092	0.052899	2.7787E-05	3.497	0.001837	525.296103576896	39.951	0.40337	39.951	39.813	40.217	0					19	9	4	0	0	0	0.47859	1	15813	15813		47.657	1.6851	1	1390900			16528	9828	10215	10264	16785	16785					0.05543083285942885
HPANSFYY	8	Unmodified	_HPANSFYY_					0	0	0		ENSG00000159674|ENST00000290902|SPON2;SPON2|p.R229W|1|0.21|ENSG00000159674|chr4:1170528-1170528|G/A|missense_variant;ENST00000509697.1_1_4:1164106-1164795:-|nuORF	ENSG00000159674|ENST00000290902|SPON2	ENSG00000159674|ENST00000290902|SPON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7236328125	2	499.721967	997.429381	-0.18631	-9.3103E-05	3.2648	0.0016315	3.0785	0.0015384	499.7233825093138	31.529	0.17191	31.529	31.441	31.613	0					9	4	3	0	0	0	0.29779	1	11497	11497		83.287	17.484	1	170700			16529	5325	10216	10265	16786	16786					-0.06943647687774046
HPARDYVVL	9	Unmodified	_HPARDYVVL_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2933959960938	2	535.293091	1068.57163	0.70656	0.00037822	-0.088318	-4.7276E-05	0.61824	0.00033094	535.2929045146674	28.666	0.36736	28.666	28.558	28.925	0					15	7	3	0	0	0	0.24334	1	10404	10404		49.442	6.5773	1	411880			16530	5723	10217	10266	16787	16787					0.04008565054414248
HPASCNTSL	9	Unmodified	_HPASCNTSL_					0	0	0			REV__PLEKHH1|p.P545Rfs*42|1|0.62|ENSG00000054690|chr14:67572178-67572178|C/-|frameshift_variant	REV__PLEKHH1|p.P545Rfs*42|1|0.62|ENSG00000054690|chr14:67572178-67572178|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2105407714844	2	465.210909	928.407265	-0.13833	-6.4353E-05	-0.1786	-8.3086E-05	-0.31693	-0.00014744	465.210697489802	22.702	0.36032	22.702	22.567	22.927	0					12	7	2	0	0	0	0.1424	1	7716	7716		69.628	2.134	1	248340	+		16531	21388	10218	10267	16788	16788					-0.05980195427844137
HPASDKIEAY	10	Unmodified	_HPASDKIEAY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.7777709960938	2	565.77747	1129.54039	1.5892	0.00089916	-0.88488	-0.00050064	0.70437	0.00039852	565.7769466413835	22.311	0.23392	22.311	22.18	22.414	0					15	5	4	0	0	0	0.3337	1	7219	7219		63.534	21.138	1	374700			16532	1919	10219	10268	16789	16789					-0.019200527703333137
HPDAPMSQVY	10	Unmodified	_HPDAPMSQVY_					0	0	0		ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000185787|ENST00000426013|MORF4L1	ENSG00000185787|ENST00000426013|MORF4L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.7589111328125	2	572.758223	1143.50189	-0.11082	-6.3471E-05	0.72519	0.00041536	0.61437	0.00035189	572.7587745939148	31.454	0.98362	31.454	31.319	32.303	0					66	24	4	0	0	0	0.50881	2	11588	11423;11588		44.377	12.061	1	1007900			16533	7105	10220	10269	16790;16791	16791					-0.06411681676490844
HPDAPMSQVY	10	Unmodified	_HPDAPMSQVY_					0	0	0		ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000185787|ENST00000426013|MORF4L1	ENSG00000185787|ENST00000426013|MORF4L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.7593994140625	2	572.758223	1143.50189	0.076232	4.3663E-05	0.70861	0.00040586	0.78484	0.00044952	572.7586161964397	31.255	0.60101	31.255	31.089	31.69	0					52	23	3	0	0	0	0.44601	2	10488	10327;10488		51.193	23.111	1	197110			16534	7105	10220	10269	16792;16793	16793					-0.06411681676490844
HPDEKSIITY	10	Unmodified	_HPDEKSIITY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	601.8060913085938	2	601.806228	1201.5979	1.5593	0.0009384	-0.83401	-0.00050191	0.7253	0.00043649	601.805732481533	29.552	0.69867	29.552	29.421	30.119	0					62	26	3	0	0	0	0.073977	1	9315	9315		101.25	29.375	1	550830			16535	2899	10221	10270	16794	16794					0.005167894352325675
HPDEKSIITY	10	Unmodified	_HPDEKSIITY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.8063354492188	2	601.806228	1201.5979	0.49574	0.00029834	-0.28089	-0.00016904	0.21486	0.0001293	601.8060670552333	29.776	1.1502	29.776	29.655	30.805	0					94	28	5	0	0	0	0.0054485	3	10660	10660;10824;10992		164.46	54.335	1	3104000			16536	2899	10221	10270	16795;16796;16797	16795					0.005167894352325675
HPDEKSIITY	10	Unmodified	_HPDEKSIITY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.8058471679688	2	601.806228	1201.5979	-0.58471	-0.00035188	0.87748	0.00052807	0.29276	0.00017619	601.8067777262296	29.622	0.64491	29.622	29.457	30.102	0					56	24	3	0	0	0	0.58189	1	9768	9768		36.447	6.129	1	453710			16537	2899	10221	10270	16798	16798					0.005167894352325675
HPDEKSIITY	10	Unmodified	_HPDEKSIITY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.8063354492188	2	601.806228	1201.5979	0.85715	0.00051584	-0.48534	-0.00029208	0.37181	0.00022376	601.8059049326145	29.811	1.1318	29.811	29.65	30.782	0					56	24	4	0	0	0	0.073977	1	11089	11089		101.25	29.375	1	2514500			16538	2899	10221	10270	16799	16799					0.005167894352325675
HPDEKSIITY	10	Unmodified	_HPDEKSIITY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.8071899414062	2	601.806228	1201.5979	0.46249	0.00027833	0.18258	0.00010988	0.64507	0.0003882	601.806369048768	29.596	0.74307	29.596	29.415	30.158	0					45	19	3	0	0	0	0.073977	1	9958	9958		101.25	37.045	1	469450			16539	2899	10221	10270	16800	16800					0.005167894352325675
HPDEKSIITY	10	Unmodified	_HPDEKSIITY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.8070678710938	2	601.806228	1201.5979	0.043814	2.6368E-05	0.25714	0.00015475	0.30095	0.00018112	601.8062993834235	29.706	0.85814	29.706	29.6	30.458	0					50	17	4	0	0	0	0.0075039	2	10904	10904;11094		155.58	45.465	1	1681100			16540	2899	10221	10270	16801;16802	16801					0.005167894352325675
HPDGKILII	9	Unmodified	_HPDGKILII_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.3099365234375	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.78	1	21.78	21.28	22.28	0								0	0	0	0.29356	1	6974	6974		21.96	0	1				16541	3722	10222	10271	16803	16803					0.09974923719619255
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.8046875	2	535.803291	1069.59203	1.2728	0.00068195	0.18999	0.00010179	1.4628	0.00078375	535.8033993006322	19.625	0.45608	19.625	19.492	19.948	0					29	13	3	0	0	0	0.02429	1	5096	5096		98.629	56.233	1	259350			16542	3655	10223	10272	16804	16804					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.5377502441406	3	357.537953	1069.59203	0.44161	0.00015789	-0.36715	-0.00013127	0.074455	2.6621E-05	357.5377332072028	19.641	0.38747	19.641	19.525	19.912	0					18	11	3	0	0	0	0.48389	1	5112	5112		34.173	8.5985	1	237220			16543	3655	10223	10272	16805	16805					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.8035888671875	2	535.803291	1069.59203	2.1814	0.0011688	-1.5524	-0.0008318	0.62899	0.00033701	535.8025789705953	19.929	0.53305	19.929	19.823	20.356	0					35	11	4	0	0	0	0.015496	1	6089	6089		113.41	53.293	1	3188600			16544	3655	10223	10272	16806	16806					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.803955078125	2	535.803291	1069.59203	-0.53482	-0.00028656	1.5567	0.00083409	1.0219	0.00054753	535.8041484040214	19.641	0.45559	19.641	19.555	20.011	0					34	15	3	0	0	0	0.10506	1	5341	5341		62.107	32.958	1	391230			16545	3655	10223	10272	16807	16807					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.5377502441406	3	357.537953	1069.59203	-0.89465	-0.00031987	0.44337	0.00015852	-0.45128	-0.00016135	357.5381079123986	19.664	0.17621	19.664	19.586	19.763	0					9	6	2	0	0	0	0.37197	1	5370	5370		44.117	16.235	1	59254			16546	3655	10223	10272	16808	16808					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.8035278320312	2	535.803291	1069.59203	1.8254	0.00097803	-1.5884	-0.00085109	0.23691	0.00012694	535.8026292254402	19.817	1.0718	19.817	19.71	20.781	0					46	21	4	0	0	0	0.015496	1	6317	6317		113.41	67.46	1	4016900			16547	3655	10223	10272	16809	16809					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.8040161132812	2	535.803291	1069.59203	2.1458	0.0011497	-0.20594	-0.00011034	1.9399	0.0010394	535.8033926587235	19.681	0.36152	19.681	19.587	19.949	0					12	8	2	0	0	0	0.10915	1	5404	5404		60.972	30.468	1	89007			16548	3655	10223	10272	16810	16810					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.803955078125	2	535.803291	1069.59203	1.0671	0.00057173	0.075316	4.0354E-05	1.1424	0.00061209	535.8033807068551	19.686	0.4884	19.686	19.573	20.062	0					22	11	3	0	0	0	0.012231	1	5393	5393		120.62	41.17	1	352030			16549	3655	10223	10272	16811	16811					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.5377197265625	3	357.537953	1069.59203	-0.089312	-3.1932E-05	0.14075	5.0322E-05	0.051435	1.839E-05	357.5379805549001	19.681	0.44953	19.681	19.573	20.023	0					18	10	2	0	0	0	0.39215	1	5395	5395		42.396	13.226	1	194710			16550	3655	10223	10272	16812	16812					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.8040771484375	2	535.803291	1069.59203	-1.3731	-0.00073573	2.3201	0.0012431	0.94694	0.00050737	535.8046694044979	19.698	0.36033	19.698	19.604	19.964	0					12	8	2	0	0	0	0.22837	1	5390	5390		51.335	22.186	1	111230			16551	3655	10223	10272	16813	16813					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.8035278320312	2	535.803291	1069.59203	0.70417	0.0003773	0.099988	5.3574E-05	0.80416	0.00043087	535.8033359070047	19.799	0.5699	19.799	19.69	20.26	0					32	11	4	0	0	0	0.0059092	1	6197	6197		138.83	101.67	1	1301500			16552	3655	10223	10272	16814	16814					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.803466796875	2	535.803291	1069.59203	1.9057	0.0010211	-2.0934	-0.0011217	-0.18769	-0.00010057	535.8025613341375	19.842	0.51938	19.842	19.723	20.243	0					38	10	4	0	0	0	0.0047071	2	6187	6187;6360		143.89	88.383	1	3537500			16553	3655	10223	10272	16815;16816	16815					0.06001735714221468
HPDKKIVAY	9	Unmodified	_HPDKKIVAY_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.8035888671875	2	535.803291	1069.59203	3.3593	0.0017999	-3.2608	-0.0017472	0.098421	5.2734E-05	535.802095291933	19.929	0.96826	19.929	19.607	20.575	0					35	19	4	0	0	0	0.047855	1	6207	6207		79.713	26.361	1	897320			16554	3655	10223	10272	16817	16817					0.06001735714221468
HPDLEPIL	8	Unmodified	_HPDLEPIL_					0	0	0		ZCCHC2|p.P959Lfs*21|1|0.06|ENSG00000141664|chr18:62574947-62574948|-/CTGTTCCT|frameshift_variant;ENSG00000141664|ENST00000269499|ZCCHC2;ENST00000591632.5_1_18:60191431-60230292:+|nuORF;nc|ENSG00000141664|Q9C0B9-2|ZCCHC2	ZCCHC2|p.P959Lfs*21|1|0.06|ENSG00000141664|chr18:62574947-62574948|-/CTGTTCCT|frameshift_variant	ZCCHC2|p.P959Lfs*21|1|0.06|ENSG00000141664|chr18:62574947-62574948|-/CTGTTCCT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.25494384765625	2	467.255643	932.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.161	1	41.161	40.661	41.661	0								0	0	0	1.7419	1	15651	15651		44.531	0	1				16555	4464	10224	10273	16818	16818					0.027783825231949777
HPDLIMGF	8	Unmodified	_HPDLIMGF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2312927246094	2	465.231113	928.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.799	1	46.799	46.299	47.299	0								0	0	0	1.7419	1	18714	18714		20.482	0	1				16556	6160	10225	10274	16819	16819					-0.0194122903741345
HPDQAQAIL	9	Unmodified	_HPDQAQAIL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7613525390625	2	496.761623	991.508694	-0.32923	-0.00016355	-0.075101	-3.7307E-05	-0.40433	-0.00020085	496.7616325834035	29.483	0.85297	29.483	29.234	30.087	0					48	21	4	0	0	0	0.19605	1	10520	10520		62.107	8.756	1	1916800			16557	2899	10226	10275	16820	16820					0.012599992663695048
HPDQAQAIL	9	Unmodified	_HPDQAQAIL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.761474609375	2	496.761623	991.508694	-1.1692	-0.00058082	1.0515	0.00052233	-0.11774	-5.8491E-05	496.7621847568452	29.234	0.61543	29.234	29.038	29.653	0					61	24	4	0	0	0	0.36892	1	9484	9484		44.377	10.862	1	528360			16558	2899	10226	10275	16821	16821					0.012599992663695048
HPDRSQPAF	9	Unmodified	_HPDRSQPAF_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.75732421875	2	527.756872	1053.49919	0.93043	0.00049104	-0.19326	-0.00010199	0.73718	0.00038905	527.7567755539185	20.582	0.90957	20.582	20.331	21.24	0					43	18	3	0	0	0	0.12239	2	6661	6661;6855		74.255	28.303	1	587220			16559	7794	10227	10276	16822;16823	16822					-0.025417690191488873
HPDRSQPAF	9	Unmodified	_HPDRSQPAF_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7571411132812	2	527.756872	1053.49919	0.67781	0.00035772	-0.18174	-9.5916E-05	0.49607	0.0002618	527.7568694731135	20.6	0.91221	20.6	20.294	21.206	0					46	18	4	0	0	0	0.13267	1	6582	6582		71.877	71.877	1	770900			16560	7794	10227	10276	16824	16824					-0.025417690191488873
HPDSAAVL	8	Unmodified	_HPDSAAVL_					0	0	0		RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;RALGAPA2|p.Y1040Tfs*3|1|0.35|ENSG00000188559|chr20:20571496-20571496|A/-|frameshift_variant	RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant	RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.2110900878906	2	405.211235	808.407917	0.64985	0.00026333	2.3321	0.00094501	2.982	0.0012083	405.2109530177874	24.992	0.60282	24.992	24.661	25.264	0					23	12	3	0	0	0	0.68754	1	8689	8689		35.201	0	1	792910			16561	7255	10228	10277	16825	16825					-0.003950327164830014
HPDSRAIMY	9	Unmodified	_HPDSRAIMY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2610473632812	2	545.260933	1088.50731	1.8674	0.0010182	-1.2809	-0.00069842	0.58653	0.00031981	545.260513434675	25.5	0.51166	25.5	25.374	25.886	0					27	10	4	0	0	0	0.087861	1	8715	8715		82.241	10.945	1	443560			16562	2958;11379	10229	10278	16826	16826					-0.033399580940340456
HPDSRAIMY	9	Unmodified	_HPDSRAIMY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.2623901367188	2	545.260933	1088.50731	4.7669	0.0025992	-2.79	-0.0015213	1.9769	0.0010779	545.2589333434476	25.261	0.16555	25.261	25.196	25.362	0					9	5	2	0	0	0	0.42902	1	7833	7833		39.253	2.0937	1	53428			16563	2958;11379	10229	10278	16827	16827					-0.033399580940340456
HPDSRAIMY	9	Unmodified	_HPDSRAIMY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2614135742188	2	545.260933	1088.50731	0.93669	0.00051074	-0.070184	-3.8268E-05	0.86651	0.00047247	545.260919905694	25.511	0.6924	25.511	25.358	26.051	0					28	12	4	0	0	0	0.17854	1	9032	9032		64.207	11.271	1	373010			16564	2958;11379	10229	10278	16828	16828					-0.033399580940340456
HPDSRAIMY	9	Unmodified	_HPDSRAIMY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.26123046875	2	545.260933	1088.50731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.431	1	25.431	24.931	25.931	0								0	0	0	0.34845	1	8085	8085		25.574	2.5316	1				16565	2958;11379	10229	10278	16829	16829					-0.033399580940340456
HPDSRAIMY	9	Unmodified	_HPDSRAIMY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6;MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2614135742188	2	545.260933	1088.50731	0.5703	0.00031096	-0.28645	-0.00015619	0.28385	0.00015477	545.260898711662	25.428	0.75316	25.428	25.264	26.017	0					32	13	4	0	0	0	0.28897	1	8888	8888		51.193	7.0759	1	439830			16566	2958;11379	10229	10278	16830	16830					-0.033399580940340456
HPDSVSSSY	9	Unmodified	_HPDSVSSSY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;SEC16A|p.P597Rfs*18|1|0.07|ENSG00000148396|chr9:136475826-136475826|G/-|frameshift_variant	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.71173095703125	2	489.711796	977.40904	-0.11073	-5.4225E-05	0.22257	0.000109	0.11184	5.477E-05	489.71169002791936	21.176	0.19144	21.176	21.135	21.326	0					8	5	2	0	0	0	0.20551	1	5802	5802		60.972	22.166	1	75531			16567	4828	10230	10279	16831	16831					-0.08056863138233439
HPDSVSSSY	9	Unmodified	_HPDSVSSSY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;SEC16A|p.P597Rfs*18|1|0.07|ENSG00000148396|chr9:136475826-136475826|G/-|frameshift_variant	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7115783691406	2	489.711796	977.40904	0.79523	0.00038943	-1.1376	-0.00055707	-0.34233	-0.00016764	489.7112506591966	21.524	0.35993	21.524	21.433	21.792	0					19	8	3	0	0	0	0.20551	1	6865	6865		60.972	9.7792	1	566520			16568	4828	10230	10279	16832	16832					-0.08056863138233439
HPDSVSSSY	9	Unmodified	_HPDSVSSSY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;SEC16A|p.P597Rfs*18|1|0.07|ENSG00000148396|chr9:136475826-136475826|G/-|frameshift_variant	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7111511230469	2	489.711796	977.40904	-0.14051	-6.8812E-05	-0.48603	-0.00023801	-0.62654	-0.00030683	489.71141569492977	21.32	0.29949	21.32	21.2	21.499	0					9	6	2	0	0	0	0.077948	1	6165	6165		85.359	22.053	1	67915			16569	4828	10230	10279	16833	16833					-0.08056863138233439
HPDTGISSKAM	11	Unmodified	_HPDTGISSKAM_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.2760009765625	2	572.27678	1142.53901	1.088	0.00062263	-1.602	-0.00091676	-0.51397	-0.00029413	572.2757486706746	21.04	0.29691	21.04	20.979	21.276	0					12	8	2	0	0	0	0.33911	1	5728	5728		58.246	6.9108	1	139760			16570	5257;7505	10231	10280	16834	16834					-0.026560101307495643
HPDTGISSKAM	11	Unmodified	_HPDTGISSKAM_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.2771606445312	2	572.27678	1142.53901	-0.085171	-4.8741E-05	0.82847	0.00047412	0.7433	0.00042537	572.2772612221183	21.348	0.40619	21.348	21.247	21.653	0					25	9	3	0	0	0	0.13966	1	6777	6777		81.525	23.279	1	878460			16571	5257;7505	10231	10280	16835	16835					-0.026560101307495643
HPDTGISSKAM	11	Unmodified	_HPDTGISSKAM_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.27685546875	2	572.27678	1142.53901	0.080773	4.6224E-05	0.078479	4.4912E-05	0.15925	9.1136E-05	572.2769479205451	21.093	0.32321	21.093	21	21.324	0					19	10	3	0	0	0	0.25663	1	5981	5981		67.494	12.717	1	107900			16572	5257;7505	10231	10280	16836	16836					-0.026560101307495643
HPDTGISSKAM	11	Unmodified	_HPDTGISSKAM_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.2769165039062	2	572.27678	1142.53901	2.0203	0.0011562	-1.5783	-0.00090325	0.44201	0.00025295	572.2759313697119	21.266	0.41536	21.266	21.16	21.575	0					24	8	4	0	0	0	0.0036452	1	7039	7039		128.6	69.82	1	1024500			16573	5257;7505	10231	10280	16837	16837					-0.026560101307495643
HPDTGISSKAM	11	Unmodified	_HPDTGISSKAM_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.2770385742188	2	572.27678	1142.53901	-1.431	-0.00081892	1.866	0.0010678	0.43497	0.00024892	572.2781163620394	21.128	0.29323	21.128	21.05	21.343	0					14	6	3	0	0	0	0.096315	1	6068	6068		90.601	44.629	1	116020			16574	5257;7505	10231	10280	16838	16838					-0.026560101307495643
HPDVTEPMRF	10	Unmodified	_HPDVTEPMRF_					0	0	0		RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;RALGAPA2|p.Y1040Tfs*3|1|0.35|ENSG00000188559|chr20:20571496-20571496|A/-|frameshift_variant;RALGAPA2|p.S919Afs*24|1|0.29|ENSG00000188559|chr20:20573022-20573022|C/-|frameshift_variant	RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant	RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	614.7928466796875	2	614.792598	1227.57064	-0.0094117	-5.7863E-06	0.19777	0.00012159	0.18836	0.0001158	614.7929042776015	33.08	0.54482	33.08	32.972	33.517	0					22	11	3	0	0	0	0.64162	1	12543	12543		29.17	0	1	193810			16575	7255	10232	10281	16839	16839					-0.034040173768289606
HPEDRGWL	8	Unmodified	_HPEDRGWL_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2455139160156	2	505.246141	1008.47773	-0.77126	-0.00038968	-0.54668	-0.00027621	-1.3179	-0.00066588	505.2458097198085	33.053	0.3102	33.053	32.957	33.267	0					35	13	4	0	0	0	0.29152	1	11049	11049		85.359	16.573	1	1307100			16576	3512	10233	10282	16840	16840					-0.026171540478571842
HPEELLGR	8	Unmodified	_HPEELLGR_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.75634765625	2	475.756341	949.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.198	1	20.198	19.698	20.698	0								0	0	0	1.7419	1	6225	6225		68.485	0.99103	1				16577	2953	10234	10283	16841	16841					0.021360166119507085
HPEEYTGPR	9	Unmodified	_HPEEYTGPR_					0	0	0		ENST00000482665.1_1_16:334415-335240:+|nuORF;PDIA2|p.G353Afs*25|1|0.32|ENSG00000185615|chr16:285638-285638|G/-|frameshift_variant;PDIA2|p.P383Lfs*93|1|0.14|ENSG00000185615|chr16:286377-286377|C/-|frameshift_variant;nc|ENSG00000185615|Q13087-2|PDIA2;ENSG00000185615|ENST00000219406|PDIA2	ENST00000482665.1_1_16:334415-335240:+|nuORF	ENST00000482665.1_1_16:334415-335240:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2572021484375	2	543.254163	1084.49377	4.8195	0.0026182	-1.0955	-0.00059515	3.724	0.0020231	543.2537204946076	21.904	0.3648	21.904	21.825	22.189	0					26	11	3	0	0	0	0.37197	1	6357	6357		44.117	5.3107	1	539370			16578	7090	10235	10284	16842	16842					-0.045094926016190584
HPEGMEGATR	10	Unmodified	_HPEGMEGATR_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.74609375	2	542.745647	1083.47674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.644	1	10.644	10.144	11.144	0								0	0	0	0.4201	1	2058	2058		10.866	1.1599	1				16579	6880	10236	10285	16843	16843					-0.061657364791017244
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.29766845703125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.974	1	27.974	27.474	28.474	0								0	0	0	0.088368	1	9835	9835		75.043	27.128	1				16580	5744	10237	10286	16844	16844					0.0781033333993264
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2979736328125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.718	1	27.718	27.218	28.218	0								0	0	0	0.22284	1	8865	8865		47.657	8.8512	1				16581	5744	10237	10286	16845	16845					0.0781033333993264
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2978820800781	2	504.297842	1006.58113	1.0286	0.00051872	-0.76454	-0.00038555	0.26407	0.00013317	504.2973953230828	28.004	2.3189	28.004	26.41	28.728	0					78	47	2	0	0	0	0.10915	1	10197	10197		77.318	31.366	1	4288300			16582	5744	10237	10286	16846	16846					0.0781033333993264
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2976379394531	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.757	1	27.757	27.257	28.257	0								0	0	0	0.19847	1	9122	9122		51.193	12.387	1				16583	5744	10237	10286	16847	16847					0.0781033333993264
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2977294921875	2	504.297842	1006.58113	2.9308	0.001478	-3.7857	-0.0019091	-0.85483	-0.00043109	504.29646992141363	27.935	1.9649	27.935	27.476	29.441	0					69	39	2	0	0	0	0.035062	1	10047	10047		104.06	37.628	1	8241200			16584	5744	10237	10286	16848	16848					0.0781033333993264
HPEPGKFY	8	Unmodified	_HPEPGKFY_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;FBXO11|p.Q220R|1|0.23|ENSG00000138081|chr2:47835930-47835930|T/C|missense_variant;FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant;FBXO11|p.F332Lfs*13|1|0.41|ENSG00000138081|chr2:47833009-47833009|A/-|frameshift_variant;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7404479980469	2	487.74016	973.465767	-0.99937	-0.00048743	1.1629	0.00056719	0.16352	7.9757E-05	487.7407707787534	13.244	0.085007	13.244	13.194	13.279	0					6	3	2	0	0	0	0.78999	1	2708	2708		13.775	0.81615	1	1578100			16585	4226	10238	10287	16849	16849					-0.02202770791052444
HPEPRKGVGE	10	Unmodified	_HPEPRKGVGE_					0	0	0		ENST00000459862.1_1_1:205499484-205500503:+|nuORF	ENST00000459862.1_1_1:205499484-205500503:+|nuORF	ENST00000459862.1_1_1:205499484-205500503:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.292724609375	2	553.291079	1104.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.901	1	44.901	44.401	45.401	0								0	0	0	0.34115	1	17988	17988		44.377	0	1				16586	9715	10239	10288	16850	16850					0.019504755607158586
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.256591796875	2	543.255848	1084.49714	2.7256	0.0014807	-0.65302	-0.00035476	2.0726	0.001126	543.2555571836031	21.914	0.33791	21.914	21.782	22.12	0					25	9	4	0	0	0	0.19605	1	6095	6095		62.107	14.45	1	348240			16587	2899	10240	10289	16851	16851					-0.041725658192717674
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.25634765625	2	543.255848	1084.49714	1.1338	0.00061597	-0.88891	-0.00048291	0.24493	0.00013306	543.2554126403935	22.079	0.80431	22.079	21.972	22.777	0					40	16	4	0	0	0	0.032052	1	7408	7408		107.01	35.712	1	4459500			16588	2899	10240	10289	16852	16852					-0.041725658192717674
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2562866210938	2	543.255848	1084.49714	0.61013	0.00033146	0.24095	0.0001309	0.85108	0.00046235	543.2560185103275	22.097	0.46753	22.097	21.988	22.455	0					23	9	3	0	0	0	0.22377	1	7306	7306		58.782	5.8453	1	1873500			16589	2899	10240	10289	16853	16853					-0.041725658192717674
HPETSGERSQA	11	Unmodified	_HPETSGERSQA_					0	0	0		nc|ENSG00000182606|Q9UPV9-2|TRAK1	nc|ENSG00000182606|Q9UPV9-2|TRAK1	nc|ENSG00000182606|Q9UPV9-2|TRAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	599.7764282226562	2	599.77599	1197.53743	0.052103	3.125E-05	0.2313	0.00013873	0.2834	0.00016998	599.7761934194182	18.629	0.39047	18.629	18.572	18.963	0					14	8	4	0	0	0	0.35529	1	5622	5622		56.434	5.0983	1	924660			16590	11669	10241	10290	16854	16854					-0.053439278951373126
HPEVTPLRF	9	Unmodified	_HPEVTPLRF_					0	0	0		ENST00000586441.1_1_19:45867568-45872241:-|nuORF;nc|ENSG00000104884|P18074-2|ERCC2;ENSG00000104884|ENST00000391945|ERCC2	ENST00000586441.1_1_19:45867568-45872241:-|nuORF	ENST00000586441.1_1_19:45867568-45872241:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.3005981445312	2	548.300916	1094.58728	0.64659	0.00035453	-0.4076	-0.00022349	0.23899	0.00013104	548.3004760558957	34.02	0.32377	34.02	33.877	34.201	0					11	7	2	0	0	0	0.56424	1	13041	13041		25.574	8.2091	1	85343			16591	2317	10242	10291	16855	16855					0.0437685157148735
HPFAIENI	8	Unmodified	_HPFAIENI_					0	0	0		ENSG00000171956|ENST00000396057|FOXB1;ENSG00000204612|ENST00000376708|FOXB2	ENSG00000171956|ENST00000396057|FOXB1	ENSG00000171956|ENST00000396057|FOXB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.74993896484375	2	470.747985	939.481417	-0.61297	-0.00028855	3.4828	0.0016395	2.8699	0.001351	470.7497036070564	38.907	0.11161	38.907	38.836	38.948	0					7	4	2	0	0	0	0.61433	1	14784	14784		46.766	0.81448	1	69726			16592	6336	10243	10292	16856	16856					0.009255157259872249
HPFEDGAKL	9	Unmodified	_HPFEDGAKL_					0	0	0		GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2574157714844	2	507.256174	1012.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.294	1	26.294	25.794	26.794	0								0	0	0	0.27025	1	7972	7972		40.778	0	1				16593	6741	10244	10293	16857	16857					-0.007954031079066226
HPFEDGAKL	9	Unmodified	_HPFEDGAKL_					0	0	0		GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.25665283203125	2	507.256174	1012.49779	0.8919	0.00045242	-0.78502	-0.00039821	0.10688	5.4216E-05	507.25576816065757	26.478	0.49588	26.478	26.34	26.835	0					27	11	3	0	0	0	0.098791	1	9106	9106		79.713	20.931	1	321150			16594	6741	10244	10293	16858	16858					-0.007954031079066226
HPFPSCRVF	9	Unmodified	_HPFPSCRVF_					0	0	0			REV__ENST00000530222.5_1_14:24685071-24685203:-|nuORF	REV__ENST00000530222.5_1_14:24685071-24685203:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2705688476562	2	545.268561	1088.52257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.871	1	19.871	19.371	20.371	0								0	0	0	0.32356	1	6072	6072		30.504	1.3541	1		+		16595	20042	10245	10294	16859	16859					-0.018150465061808063
HPFSPPILG	9	Unmodified	_HPFSPPILG_					0	0	0		ENST00000425394.6_1_12:56727327-56727459:-|nuORF	ENST00000425394.6_1_12:56727327-56727459:-|nuORF	ENST00000425394.6_1_12:56727327-56727459:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7667541503906	2	482.766178	963.517802	-0.13504	-6.5193E-05	0.12584	6.0752E-05	-0.009199	-4.441E-06	482.76582348466843	31.887	0.86384	31.887	31.601	32.464	0					58	21	4	0	0	0	0.30268	1	11832	11832		50.025	0.81375	1	476660			16596	9433	10246	10295	16860	16860					0.034583926227242046
HPGAKKMT	8	Unmodified	_HPGAKKMT_					0	0	0		ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant;ENSG00000111981|ENST00000229708|ULBP1	ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant	ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2352294921875	2	435.23673	868.458907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.503	1	24.503	24.003	25.003	0								0	0	0	1.7419	1	7509	7509		19.36	2.655	1				16597	2711	10247	10296	16861	16861					0.01941593056722013
HPGARLLPPGL	11	Unmodified	_HPGARLLPPGL_					0	0	0		ENST00000301015.13_2_16:88800318-88802577:-|nuORF	ENST00000301015.13_2_16:88800318-88802577:-|nuORF	ENST00000301015.13_2_16:88800318-88802577:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.3375854492188	2	564.337833	1126.66111	-1.0734	-0.00060577	0.33918	0.00019141	-0.73423	-0.00041435	564.3379198676312	33.739	2.2056	33.739	33.628	35.834	0					232	72	5	0	0	0	0.69004	1	12620	12620		19.104	0	1	7060700			16598	8489	10248	10297	16862	16862					0.10284819733806216
HPGEPAPELAS	11	Unmodified	_HPGEPAPELAS_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8479309082031	3	368.848856	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.012	1	42.012	41.512	42.512	0								0	0	0	0.40864	1	15938	15938		35.178	3.6484	1		+		16599	17502	10249	10298	16863	16863					-0.022883392874064157
HPGGPLQLL	9	Unmodified	_HPGGPLQLL_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.271484375	2	466.271627	930.528701	-0.6701	-0.00031245	0.21306	9.9343E-05	-0.45704	-0.0002131	466.2717852600983	35.388	0.23755	35.388	35.257	35.495	0					10	6	2	0	0	0	0.49003	1	13269	13269		33.516	1.5607	1	84522	+		16600	13775	10250	10299	16864	16864					0.06065794997005014
HPGGWSDF	8	Unmodified	_HPGGWSDF_					0	0	0			REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.69293212890625	2	451.69321	901.371866	-0.012549	-5.6685E-06	0.10611	4.7929E-05	0.093561	4.2261E-05	451.69323345440097	20.104	0.40961	20.104	20.034	20.444	0					24	13	3	0	0	0	0.4434	1	5333	5333		65.897	2.5912	1	582350	+		16601	15416	10251	10300	16865	16865					-0.08276489893341932
HPGGWSDF	8	Unmodified	_HPGGWSDF_					0	0	0			REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.6929016113281	2	451.69321	901.371866	-1.1921	-0.00053848	0.71105	0.00032118	-0.48109	-0.0002173	451.69353213049857	20.157	0.91517	20.157	20.058	20.973	0					54	29	4	0	0	0	0.55361	2	5573	5573;5733		54.765	54.765	1	2631100	+		16602	15416	10251	10300	16866;16867	16866					-0.08276489893341932
HPGGWSDF	8	Unmodified	_HPGGWSDF_					0	0	0			REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.6930236816406	2	451.69321	901.371866	-0.099944	-4.5144E-05	-0.27798	-0.00012556	-0.37793	-0.00017071	451.6930523761014	20.226	0.99062	20.226	20.129	21.12	0					41	23	4	0	0	0	0.55361	1	5638	5638		54.765	1.4132	1	2239300	+		16603	15416	10251	10300	16868	16868					-0.08276489893341932
HPGLILKY	8	Unmodified	_HPGLILKY_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7841491699219	2	470.78437	939.554188	0.16009	7.537E-05	0.14338	6.75E-05	0.30347	0.00014287	470.78402573808	32.266	0.25467	32.266	32.139	32.393	0					14	6	3	0	0	0	0.55361	1	11841	11841		54.765	26.51	1	264510			16604	1956	10252	10301	16869	16869					0.081992695194117
HPGLILKY	8	Unmodified	_HPGLILKY_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7840576171875	2	470.78437	939.554188	-0.54524	-0.00025669	0.27111	0.00012764	-0.27413	-0.00012906	470.7843729040235	32.178	0.31934	32.178	32.068	32.387	0					14	6	3	0	0	0	0.4434	1	12118	12118		65.897	28.869	1	387460			16605	1956	10252	10301	16870	16870					0.081992695194117
HPGQISAGY	9	Unmodified	_HPGQISAGY_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2273254394531	2	465.227417	928.44028	-0.43963	-0.00020453	0.28693	0.00013349	-0.1527	-7.104E-05	465.2276015410696	24.382	0.12731	24.382	24.269	24.396	0					7	4	2	0	0	0	0.047412	1	7175	7175		96.19	24.895	1	88085			16606	5177	10253	10302	16871	16871					-0.026802453134678217
HPGQISAGY	9	Unmodified	_HPGQISAGY_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2275085449219	2	465.227417	928.44028	-0.8188	-0.00038093	0.48375	0.00022505	-0.33505	-0.00015587	465.22854681105787	24.377	0.22122	24.377	24.313	24.534	0					11	7	2	0	0	0	0.20551	1	7462	7462		60.972	22.166	1	102640			16607	5177	10253	10302	16872	16872					-0.026802453134678217
HPGQISAGY	9	Unmodified	_HPGQISAGY_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2275695800781	2	465.227417	928.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.585	1	24.585	24.085	25.085	0								0	0	0	0.05454	1	8499	8499		84.916	13.62	1				16608	5177	10253	10302	16873	16873					-0.026802453134678217
HPGRGARL	8	Unmodified	_HPGRGARL_					0	0	0		ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.25262451171875	2	432.25156	862.488568	2.5682	0.0011101	-0.085229	-3.684E-05	2.483	0.0010733	432.25147174362354	35.509	0.27237	35.509	35.398	35.671	0					11	5	3	0	0	0	0.4723	1	13728	13728		62.978	62.978	1	431900			16609	6788	10254	10303	16874	16874					0.05182293117093195
HPGRQSRH	8	Unmodified	_HPGRQSRH_					0	0	0			REV__ENST00000331920.10_1_9:98231408-98238427:-|nuORF	REV__ENST00000331920.10_1_9:98231408-98238427:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.755859375	2	487.754998	973.495444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.438	1	22.438	21.938	22.938	0								0	0	0	1.7419	1	6605	6605		31.955	5.2619	1		+		16610	18385	10255	10304	16875	16875					0.007636059976675824
HPGSHVHGPR	10	Unmodified	_HPGSHVHGPR_					0	0	0		nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7753295898438	2	540.775931	1079.53731	1.0371	0.00056085	-2.1744	-0.0011758	-1.1372	-0.00061499	540.774938156018	30.477	0.2454	30.477	30.386	30.632	0					10	6	2	0	0	0	0.46215	1	10374	10374		49.442	5.0644	1	218090			16611	11673	10256	10305	16876	16876					0.0007216168617105723
HPGSPPTPAG	10	Unmodified	_HPGSPPTPAG_					0	0	0			REV__ENST00000336702.7_1_11:118987385-118987784:+|nuORF	REV__ENST00000336702.7_1_11:118987385-118987784:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2288818359375	2	459.227417	916.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.057	1	13.057	12.557	13.557	0								0	0	0	0.2708	1	2541	2541		55.504	2.1528	1		+		16612	18416	10257	10306	16877	16877					-0.021282453134745083
HPGSSALHY	9	Unmodified	_HPGSSALHY_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7325744628906	2	484.732866	967.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.911	1	21.911	21.411	22.411	0								0	0	0	0.31623	1	7035	7035		31.955	5.1588	1				16613	1322	10258	10307	16878	16878					-0.03384842939203736
HPHAVGGGVVR	11	Unmodified	_HPHAVGGGVVR_					0	0	0			REV__PLG|p.C585G|1|0.35|ENSG00000122194|chr6:160736958-160736958|T/G|missense_variant	REV__PLG|p.C585G|1|0.35|ENSG00000122194|chr6:160736958-160736958|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.3017578125	2	543.301781	1084.58901	0.34105	0.00018529	0.099305	5.3952E-05	0.44036	0.00023925	543.3019553688633	17.458	0.17113	17.458	17.365	17.536	0					12	6	3	0	0	0	0.60833	1	4364	4364		51.335	16.157	1	193800	+		16614	21391	10259	10308	16879	16879					0.050099053800977345
HPHAVNEIAL	10	Unmodified	_HPHAVNEIAL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.D377*|1|0.22|ENSG00000157827|chr2:152614911-152614912|-/T|frameshift_variant;FMNL3|p.G383Vfs*11|1|0.37|ENSG00000161791|chr12:49653798-49653798|C/-|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7963256835938	2	550.795998	1099.57744	0.56391	0.0003106	-0.38	-0.0002093	0.18391	0.0001013	550.7957577063165	28.92	0.48776	28.92	28.758	29.245	0					22	12	3	0	0	0	0.536	1	10285	10285		41.427	8.6142	1	339700			16615	5422	10260	10309	16880	16880					0.031636635660561296
HPHGLQVTY	9	Unmodified	_HPHGLQVTY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2703247070312	2	526.269616	1050.52468	0.62753	0.00033025	-1.6765	-0.00088232	-1.049	-0.00055207	526.2684073305752	25.867	0.45912	25.867	25.734	26.193	0					16	12	2	0	0	0	0.17854	1	7802	7802		64.207	10.856	1	163670			16616	535	10261	10310	16881	16881					0.001437055032738499
HPHGLQVTY	9	Unmodified	_HPHGLQVTY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.26904296875	2	526.269616	1050.52468	0.10035	5.2809E-05	-1.069	-0.00056257	-0.96863	-0.00050976	526.269229410904	26.12	0.54955	26.12	25.986	26.535	0					27	13	4	0	0	0	0.15163	1	8958	8958		67.494	4.1874	1	1216200			16617	535	10261	10310	16882	16882					0.001437055032738499
HPHGLQVTY	9	Unmodified	_HPHGLQVTY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2695922851562	2	526.269616	1050.52468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.01	1	26.01	25.51	26.51	0								0	0	0	0.14881	1	8312	8312		60.118	13.352	1				16618	535	10261	10310	16883	16883					0.001437055032738499
HPHGPPGGL	9	Unmodified	_HPHGPPGGL_					0	0	0		nc|ENSG00000072182|Q96FT7-1|ASIC4;ENSG00000072182|ENST00000358078|ASIC4	nc|ENSG00000072182|Q96FT7-1|ASIC4	nc|ENSG00000072182|Q96FT7-1|ASIC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.7237548828125	2	434.724844	867.435135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.224	1	24.224	23.724	24.724	0								0	0	0	0.21213	1	7520	7520		49.211	8.6382	1				16619	1484	10262	10311	16884	16884					-0.0038850438542112897
HPHHAGPGHPG	11	Unmodified	_HPHHAGPGHPG_					0	0	0		ENST00000329410.3_1_16:29756111-29756192:-|nuORF	ENST00000329410.3_1_16:29756111-29756192:-|nuORF	ENST00000329410.3_1_16:29756111-29756192:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.7604370117188	2	550.760281	1099.50601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.334	1	16.334	15.834	16.834	0								0	0	0	0.45674	1	3850	3850		17.365	0	1				16620	8665	10263	10312	16885	16885					-0.0397641134791229
HPHQNLIATY	10	Unmodified	_HPHQNLIATY_					0	0	0		nc|ENSG00000122692|Q2TAY7-2|SMU1;ENSG00000122692|ENST00000397149|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.3067016601562	2	597.306729	1192.59891	0.049601	2.9627E-05	0.48681	0.00029078	0.53641	0.0003204	597.3068778875677	27.129	0.46342	27.129	27.037	27.501	0					23	11	3	0	0	0	0.011749	1	9447	9447		136.27	51.353	1	543930			16621	3280	10264	10313	16886	16886					0.010310485948139103
HPHQNLIATY	10	Unmodified	_HPHQNLIATY_					0	0	0		nc|ENSG00000122692|Q2TAY7-2|SMU1;ENSG00000122692|ENST00000397149|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.3071899414062	2	597.306729	1192.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.03	1	27.03	26.53	27.53	0								0	0	0	0.37129	1	8789	8789		39.253	0	1				16622	3280	10264	10313	16887	16887					0.010310485948139103
HPIEGSTTVF	10	Unmodified	_HPIEGSTTVF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2753295898438	2	544.274564	1086.53457	1.1705	0.00063708	-0.094588	-5.1482E-05	1.0759	0.00058559	544.2744696328774	32.647	0.48035	32.647	32.508	32.989	0					50	19	3	0	0	0	0.44469	1	10531	10531		51.335	7.2187	1	535910			16623	6178	10265	10314	16888	16888					-0.005231512819818818
HPIEGSTTVF	10	Unmodified	_HPIEGSTTVF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.275146484375	2	544.274564	1086.53457	1.9689	0.0010716	-1.1854	-0.00064521	0.78348	0.00042643	544.2738930634606	32.961	0.85277	32.961	32.679	33.532	0					43	20	4	0	0	0	0.4943	1	12541	12541		45.952	3.5558	1	1456900			16624	6178	10265	10314	16889	16889					-0.005231512819818818
HPIEHLLI	8	Unmodified	_HPIEHLLI_					0	0	0			REV__SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	REV__SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.28924560546875	2	486.287277	970.560001	2.5218	0.0012263	1.6808	0.00081734	4.2026	0.0020437	486.2880776418699	42.092	0.2888	42.092	41.969	42.257	0					13	7	3	0	0	0	0.72892	1	16756	16756		29.842	0.69198	1	267570	+		16625	16076	10266	10315	16890	16890					0.07354368031099057
HPIEVSVGH	9	Unmodified	_HPIEVSVGH_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.75579833984375	2	487.756341	973.498129	0.39772	0.00019399	-0.92001	-0.00044874	-0.52229	-0.00025475	487.755937398818	22.667	0.22421	22.667	22.531	22.756	0					13	5	3	0	0	0	0.043797	1	7367	7367		97.473	39.661	1	208950			16626	4435	10267	10316	16891	16891					0.010320166119640817
HPIHQGITEL	10	Unmodified	_HPIHQGITEL_					0	0	0		nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.8096923828125	2	572.809105	1143.60366	3.373	0.0019321	-1.1879	-0.00068046	2.1851	0.0012517	572.8084521043531	26.599	0.56739	26.599	26.469	27.036	0					19	11	3	0	0	0	0.06456	1	9421	9421		72.879	18.103	1	611470			16627	4900	10268	10317	16892	16892					0.037599327375801295
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8115234375	2	524.811116	1047.60768	1.8603	0.0009763	-1.3071	-0.00068596	0.55324	0.00029035	524.8106566689697	27.548	0.38622	27.548	27.419	27.805	0					22	9	4	0	0	0	0.032052	1	9645	9645		107.01	40.578	1	803570			16628	2508	10269	10318	16893	16893					0.08578022231290561
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.8112182617188	2	524.811116	1047.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.364	1	27.364	26.864	27.864	0								0	0	0	0.19847	1	8942	8942		51.193	10.62	1				16629	2508	10269	10318	16894	16894					0.08578022231290561
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8112182617188	2	524.811116	1047.60768	0.53859	0.00028266	0.31519	0.00016541	0.85377	0.00044807	524.8113375732007	27.518	0.52129	27.518	27.357	27.878	0					12	10	2	0	0	0	0.17854	1	9844	9844		64.207	19.83	1	755430			16630	2508	10269	10318	16895	16895					0.08578022231290561
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8114624023438	2	524.811116	1047.60768	1.6265	0.0008536	-1.4716	-0.00077232	0.15489	8.1287E-05	524.8106571875004	27.501	0.37166	27.501	27.34	27.712	0					15	7	3	0	0	0	0.1115	1	9862	9862		76.774	7.9873	1	548820			16631	2508	10269	10318	16896	16896					0.08578022231290561
HPIQTQAQY	9	Unmodified	_HPIQTQAQY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.2727661132812	2	543.272355	1084.53016	1.1517	0.00062569	-1.2476	-0.00067781	-0.095936	-5.2119E-05	543.2715776744667	22.405	0.41215	22.405	22.307	22.719	0					30	12	3	0	0	0	0.11898	1	6312	6312		75.043	23.708	1	421030			16632	5425	10270	10319	16897	16897					-0.008726157049068206
HPIQTQAQY	9	Unmodified	_HPIQTQAQY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.272705078125	2	543.272355	1084.53016	0.33763	0.00018342	-0.33245	-0.00018061	0.005175	2.8114E-06	543.2720890073914	22.729	0.54296	22.729	22.591	23.134	0					48	13	5	0	0	0	0.0040894	1	7410	7410		162.25	62.878	1	2650100			16633	5425	10270	10319	16898	16898					-0.008726157049068206
HPIQTQAQY	9	Unmodified	_HPIQTQAQY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2728881835938	2	543.272355	1084.53016	0.32056	0.00017415	-0.35813	-0.00019456	-0.037575	-2.0414E-05	543.2720383642925	22.636	0.40989	22.636	22.485	22.894	0					19	8	3	0	0	0	0.11898	1	7679	7679		75.043	21.692	1	716270			16634	5425	10270	10319	16899	16899					-0.008726157049068206
HPIQTQAQY	9	Unmodified	_HPIQTQAQY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.2725830078125	2	543.272355	1084.53016	-1.4904	-0.00080971	1.6799	0.00091266	0.18949	0.00010295	543.2731118825466	22.513	0.37383	22.513	22.407	22.781	0					22	8	3	0	0	0	0.11898	1	6706	6706		75.043	18.322	1	440290			16635	5425	10270	10319	16900	16900					-0.008726157049068206
HPIQTQAQY	9	Unmodified	_HPIQTQAQY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2728271484375	2	543.272355	1084.53016	3.6315	0.0019729	-3.4592	-0.0018793	0.17232	9.3616E-05	543.2703389929262	22.618	0.7115	22.618	22.455	23.167	0					40	14	5	0	0	0	0.063171	1	7556	7556		90.601	8.2958	1	2824300			16636	5425	10270	10319	16901	16901					-0.008726157049068206
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.8113708496094	2	509.811451	1017.60835	-0.028344	-1.445E-05	0.11133	5.6755E-05	0.082981	4.2305E-05	509.81144914428023	28.169	0.31672	28.169	28.059	28.375	0					10	6	2	0	0	0	0.21263	1	10187	10187		35.618	0	1	488760			16637	3155	10271	10320	16902	16902					0.10024861670990504
HPISSEELL	9	Unmodified	_HPISSEELL_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ETS1|p.N203Rfs*56|1|0.07|ENSG00000134954|chr11:128484945-128484946|-/ATTTCTTC|frameshift_variant;ENSG00000134954|ENST00000392668|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.769287109375	2	512.769114	1023.52368	-0.27207	-0.00013951	-4.2835	-0.0021964	-4.5555	-0.0023359	513.2674744091922	35.076	0.28534	35.076	34.894	35.179	0					25	12	3	0	0	0	0.51817	1	11819	11819		30.504	2.2494	1	149610			16638	11533	10272	10321	16903	16903					0.01285446343717922
HPKEGTHIY	9	Unmodified	_HPKEGTHIY_					0	0	0			REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B	REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.27685546875	2	541.274898	1080.53524	-1.4837	-0.00080308	2.379	0.0012877	0.89527	0.00048459	541.2760767399584	30.056	0.36044	30.056	29.858	30.218	0					18	9	3	0	0	0	0.51817	1	10158	10158		30.504	2.6214	1	277990	+		16639	16063	10273	10322	16904	16904					-0.0018031184229130304
HPKNEETIY	9	Unmodified	_HPKNEETIY_					0	0	0			REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant	REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.7783813476562	2	565.77747	1129.54039	0.75099	0.00042489	0.2794	0.00015808	1.0304	0.00058297	565.7775962383736	22.198	0.26436	22.198	22.089	22.353	0					9	5	2	0	0	0	0.37197	1	7359	7359		44.117	3.3386	1	346660	+		16640	15657	10274	10323	16905	16905					-0.019200527703105763
HPKVAAEGP	9	Unmodified	_HPKVAAEGP_					0	0	0		nc|ENSG00000175556|Q496Y0-3|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3;LONRF3|p.V169Rfs*11|1|0.49|ENSG00000175556|chrX:118975280-118975281|-/C|frameshift_variant	nc|ENSG00000175556|Q496Y0-3|LONRF3	nc|ENSG00000175556|Q496Y0-3|LONRF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.24468994140625	2	453.245609	904.476666	-2.6192	-0.0011871	0.38648	0.00017517	-2.2327	-0.001012	453.2457746167348	27.399	0.17398	27.399	27.32	27.494	0					6	4	2	0	0	0	0.47038	1	8970	8970		35.618	1.4457	1	56822			16641	6565	10275	10324	16906	16906					0.02060631583231043
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7595825195312	2	516.759081	1031.50361	1.3501	0.0006977	0.843	0.00043563	2.1931	0.0011333	516.7590002551298	22.636	0.2902	22.636	22.501	22.791	0					18	9	3	0	0	0	0.20551	1	6423	6423		60.972	18.576	1	90248			16642	3259	10276	10325	16907	16907					-0.010883045962373217
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.75927734375	2	516.759081	1031.50361	1.2694	0.00065599	-0.13024	-6.7302E-05	1.1392	0.00058869	516.7586185015427	22.94	0.47139	22.94	22.805	23.277	0					29	11	4	0	0	0	0.14603	1	7514	7514		68.787	13.283	1	882740			16643	3259	10276	10325	16908	16908					-0.010883045962373217
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7600708007812	2	516.759081	1031.50361	4.636	0.0023957	-2.9495	-0.0015242	1.6865	0.0008715	516.7575081831384	22.661	0.32404	22.661	22.572	22.896	0					15	11	2	0	0	0	0.43426	1	6706	6706		38.806	3.1879	1	47611			16644	3259	10276	10325	16909	16909					-0.010883045962373217
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7593994140625	2	516.759081	1031.50361	0.94069	0.00048611	1.2221	0.00063151	2.1627	0.0011176	516.7589087218092	22.867	0.5184	22.867	22.66	23.179	0					27	10	5	0	0	0	0.20551	1	7788	7788		60.972	9.6365	1	444520			16645	3259	10276	10325	16910	16910					-0.010883045962373217
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7590942382812	2	516.759081	1031.50361	1.1719	0.00060561	0.0020682	1.0687E-06	1.174	0.00060668	516.7589715672319	22.73	0.32415	22.73	22.575	22.899	0					10	7	2	0	0	0	0.35045	1	6804	6804		45.952	7.1458	1	66685			16646	3259	10276	10325	16911	16911					-0.010883045962373217
HPLGRPLL	8	Unmodified	_HPLGRPLL_					0	0	0		CABP4|p.L48Sfs*84|1|0.22|ENSG00000175544|chr11:67455560-67455560|G/-|frameshift_variant	CABP4|p.L48Sfs*84|1|0.22|ENSG00000175544|chr11:67455560-67455560|G/-|frameshift_variant	CABP4|p.L48Sfs*84|1|0.22|ENSG00000175544|chr11:67455560-67455560|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7809143066406	2	451.782162	901.549771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.024	1	41.024	40.524	41.524	0								0	0	0	1.7419	1	16132	16132		62.978	7.4742	1				16647	343	10277	10326	16912	16912					0.09505805096512177
HPLLEGGYF	9	Unmodified	_HPLLEGGYF_					0	0	0		nc|ENSG00000010379|Q9NSD5-3|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7610473632812	2	516.761092	1031.50763	0.8322	0.00043005	-2.939	-0.0015188	-2.1068	-0.0010887	516.7594645118636	22.736	0.35832	22.736	22.605	22.963	0					13	8	3	0	0	0	0.30268	1	6819	6819		50.025	4.0726	1	149460			16648	11417	10278	10327	16913	16913					-0.006862151025188723
HPLMGTPHCI	10	Unmodified	_HPLMGTPHCI_					0	0	0			REV__ENST00000468655.1_1_19:49994004-49994437:+|nuORF	REV__ENST00000468655.1_1_19:49994004-49994437:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.267822265625	2	553.267704	1104.52086	1.8211	0.0010075	-1.5105	-0.0008357	0.31056	0.00017183	553.2667517138249	20.618	0.41961	20.618	20.522	20.942	0					20	9	3	0	0	0	0.33577	1	6439	6439		63.306	15.649	1	877250	+		16649	19444	10279	10328	16914	16914					-0.027224235864423463
HPLPAPPFL	9	Unmodified	_HPLPAPPFL_					0	0	0			REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1915283203125	3	330.192006	987.554188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.945	1	42.945	42.445	43.445	0								0	0	0	0.36266	1	16238	16238		21.96	1.9631	1		+		16650	14482	10280	10329	16915	16915					0.059912695194157095
HPLQFLRSV	9	Unmodified	_HPLQFLRSV_					0	0	0		ENST00000485029.5_1_3:47545746-47555080:-|nuORF	ENST00000485029.5_1_3:47545746-47555080:-|nuORF	ENST00000485029.5_1_3:47545746-47555080:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.2120361328125	3	366.213581	1095.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.089	1	12.089	11.589	12.589	0								0	0	0	0.3245	1	2635	2635		30.318	7.7381	1				16651	10005	10281	10330	16916	16916					0.0749284432542936
HPLQSSTGF	9	Unmodified	_HPLQSSTGF_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.24029541015625	2	487.240524	972.466495	-0.001043	-5.0817E-07	-0.11013	-5.3658E-05	-0.11117	-5.4166E-05	487.2406846712011	27.2	0.26039	27.2	27.037	27.298	0					17	10	2	0	0	0	0.42902	1	8332	8332		39.253	13.803	1	44325			16652	1543	10282	10331	16917	16917					-0.02083976141977928
HPLQSSTGF	9	Unmodified	_HPLQSSTGF_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.24029541015625	2	487.240524	972.466495	-0.33527	-0.00016336	0.065911	3.2114E-05	-0.26936	-0.00013124	487.2405256405363	27.415	0.55506	27.415	27.237	27.792	0					25	13	3	0	0	0	0.1424	1	9545	9545		69.628	27.231	1	388010			16653	1543	10282	10331	16918	16918					-0.02083976141977928
HPLQSVFQKI	10	Unmodified	_HPLQSVFQKI_					0	0	0			REV__VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	REV__VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.5647277832031	3	399.564391	1195.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.743	1	28.743	28.243	29.243	0								0	0	0	0.41767	1	9581	9581		25.126	2.5463	1		+		16654	15044	10283	10332	16919	16919					0.08133382668393097
HPLRSRAF	8	Unmodified	_HPLRSRAF_					0	0	0		SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant;nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4	SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant	SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2813720703125	2	492.280318	982.546083	2.7304	0.0013441	-0.42893	-0.00021115	2.3015	0.001133	492.28012444077365	44.304	0.43245	44.304	44.181	44.614	0					37	17	3	0	0	0	0.66372	1	17726	17726		38.806	8.3025	1	637670			16655	5256	10284	10333	16920	16920					0.054111353226630854
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.275146484375	2	560.275095	1118.53564	1.4333	0.00080307	-0.68863	-0.00038582	0.74472	0.00041725	560.2747164704297	22.494	0.4059	22.494	22.357	22.763	0					36	12	4	0	0	0	0.14393	1	6338	6338		87.754	0	1	434630			16656	7707	10285	10334	16921	16921					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.275390625	2	560.275095	1118.53564	0.12516	7.0124E-05	0.5408	0.000303	0.66596	0.00037312	560.2754122181293	22.561	0.49176	22.561	22.393	22.884	0					36	16	3	0	0	0	0.11278	1	6617	6617		93.195	0	1	578450			16657	7707	10285	10334	16922	16922					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.2747802734375	2	560.275095	1118.53564	1.568	0.00087853	-0.9312	-0.00052173	0.63684	0.0003568	560.2744448006495	22.62	0.41161	22.62	22.488	22.899	0					20	9	3	0	0	0	0.053679	1	6739	6739		108.09	0	1	288530			16658	7707	10285	10334	16923	16923					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.2760620117188	2	560.275095	1118.53564	1.0408	0.00058316	-0.32562	-0.00018244	0.71522	0.00040072	560.2749967977522	22.61	0.5416	22.61	22.422	22.963	0					31	12	4	0	0	0	0.17732	1	6734	6734		82.241	0	1	776460			16659	7707	10285	10334	16924	16924					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.2752685546875	2	560.275095	1118.53564	-0.86233	-0.00048314	1.2339	0.00069132	0.37157	0.00020818	560.2757994678852	22.568	0.37094	22.568	22.454	22.825	0					19	8	3	0	0	0	0.24256	1	6751	6751		74.255	0	1	181270			16660	7707	10285	10334	16925	16925					-0.01888936913087491
HPLSRYSLP	9	Unmodified	_HPLSRYSLP_					0	0	0			REV__nc|ENSG00000185513|Q9Y468|L3MBTL1	REV__nc|ENSG00000185513|Q9Y468|L3MBTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.29345703125	2	535.293091	1068.57163	2.212	0.0011841	-0.80854	-0.0004328	1.4034	0.00075125	535.2924429992503	28.696	0.33747	28.696	28.603	28.94	0					17	8	3	0	0	0	0.50761	1	10200	10200		31.53	15.057	1	271570	+		16661	17031	10286	10335	16926	16926					0.04008565054414248
HPLSTPAS	8	Unmodified	_HPLSTPAS_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	405.2113342285156	2	405.211235	808.407917	-1.3719	-0.00055591	-0.29408	-0.00011917	-1.666	-0.00067507	405.21160819119405	24.841	0.23876	24.841	24.734	24.973	0					10	8	2	0	0	0	0.6282	1	7662	7662		44.531	0	1	91812			16662	5930	10287	10336	16927	16927					-0.003950327164716327
HPMGGLNAM	9	Unmodified	_HPMGGLNAM_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.21112060546875	2	464.212398	926.410242	-0.73809	-0.00034263	-0.36932	-0.00017144	-1.1074	-0.00051407	464.2122903146118	29.239	0.25477	29.239	29.107	29.362	0					17	10	3	0	0	0	0.23186	1	9477	9477		57.811	17.033	1	128660			16663	4866	10288	10337	16928	16928					-0.05590643574680598
HPMGGLNAM	9	Unmodified	_HPMGGLNAM_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.21246337890625	2	464.212398	926.410242	-2.3662	-0.0010984	1.6796	0.00077967	-0.68663	-0.00031874	464.21329200815194	29.249	0.2851	29.249	29.13	29.415	0					11	7	2	0	0	0	0.55282	1	9804	9804		26.796	2.5934	1	117470			16664	4866	10288	10337	16929	16929					-0.05590643574680598
HPMNDPTRTF	10	Unmodified	_HPMNDPTRTF_					0	0	0		ENST00000484214.1_1_1:156263748-156265436:-|nuORF;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP	ENST00000484214.1_1_1:156263748-156265436:-|nuORF	ENST00000484214.1_1_1:156263748-156265436:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.2823486328125	2	608.282397	1214.55024	0.22603	0.00013749	-0.45054	-0.00027406	-0.22452	-0.00013657	608.2823235634937	25.548	0.64405	25.548	25.242	25.886	0					31	13	3	0	0	0	0.43008	1	8794	8794		52.937	3.4952	1	418940			16665	7592	10289	10338	16930	16930					-0.04845188036597392
HPNDDDVHF	9	Unmodified	_HPNDDDVHF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.L525Yfs*9|1|0.08|ENSG00000114127|chr3:142414154-142414154|A/-|frameshift_variant;XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant;XRN1|p.L671Ffs*2|1|0.14|ENSG00000114127|chr3:142403764-142403765|-/AA|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2283325195312	2	548.228145	1094.44174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.346	1	25.346	24.846	25.846	0								0	0	0	0.17378	1	8045	8045		54.776	18.33	1				16666	2836	10290	10339	16931	16931					-0.10170656015384338
HPNDDDVHF	9	Unmodified	_HPNDDDVHF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.L525Yfs*9|1|0.08|ENSG00000114127|chr3:142414154-142414154|A/-|frameshift_variant;XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant;XRN1|p.L671Ffs*2|1|0.14|ENSG00000114127|chr3:142403764-142403765|-/AA|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2288208007812	2	548.228145	1094.44174	1.1568	0.00063418	-0.54376	-0.0002981	0.61302	0.00033607	548.7294431130455	25.37	0.27258	25.37	25.171	25.443	0					12	6	2	0	0	0	0.12239	1	8018	8018		74.255	35.002	1	38985			16667	2836	10290	10339	16932	16932					-0.10170656015384338
HPNDDDVHF	9	Unmodified	_HPNDDDVHF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.L525Yfs*9|1|0.08|ENSG00000114127|chr3:142414154-142414154|A/-|frameshift_variant;XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant;XRN1|p.L671Ffs*2|1|0.14|ENSG00000114127|chr3:142403764-142403765|-/AA|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.228515625	2	548.228145	1094.44174	0.51681	0.00028333	0.024075	1.3199E-05	0.54089	0.00029653	548.2281173939011	25.336	0.90681	25.336	25.162	26.068	0					35	16	3	0	0	0	0.0792	1	8861	8861		84.916	37.258	1	536830			16668	2836	10290	10339	16933	16933					-0.10170656015384338
HPNGLQVMY	9	Unmodified	_HPNGLQVMY_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7582397460938	2	529.758027	1057.5015	0.4584	0.00024284	0.19011	0.00010071	0.6485	0.00034355	529.7583645896165	35.36	0.2397	35.36	35.257	35.497	0					24	12	3	0	0	0	0.41354	1	11575	11575		40.573	7.0796	1	100700			16669	4021	10291	10340	16934	16934					-0.024950566056986645
HPNGLQVMY	9	Unmodified	_HPNGLQVMY_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7582397460938	2	529.758027	1057.5015	0.11414	6.0464E-05	1.131	0.00059915	1.2451	0.00065961	529.7582586612459	35.641	0.42048	35.641	35.521	35.942	0					36	11	4	0	0	0	0.11118	1	13366	13366		76.847	34.372	1	834900			16670	4021	10291	10340	16935	16935					-0.024950566056986645
HPNGLQVMY	9	Oxidation (M)	_HPNGLQVM(Oxidation (M))Y_		HPNGLQVM(1)Y		HPNGLQVM(66)Y	0	0	1		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7557373046875	2	537.755484	1073.49641	0.22099	0.00011884	1.5237	0.0008194	1.7447	0.00093824	537.7563251911937	31.117	0.34736	31.117	30.944	31.291	0					12	8	2	0	0	0	0.16524	1	11306	11306		65.803	23.329	1	163570			16671	4021	10291	10341	16936	16936		166			-0.037393604683074955
HPNGNITEL	9	Unmodified	_HPNGNITEL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7511291503906	2	497.751256	993.487959	-0.28295	-0.00014084	1.7112	0.00085175	1.4282	0.00071091	497.75161815105065	28.804	0.81023	28.804	28.435	29.245	0					46	20	4	0	0	0	0.062676	1	10223	10223		90.777	2.1338	1	1823700			16672	7433	10292	10342	16937	16937					-0.00904591113294373
HPNGNITEL	9	Unmodified	_HPNGNITEL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7515869140625	2	497.751256	993.487959	0.79949	0.00039795	0.34441	0.00017143	1.1439	0.00056938	497.7512904587549	28.711	0.5567	28.711	28.465	29.022	0					17	11	2	0	0	0	0.30951	1	10615	10615		49.442	1.7842	1	708910			16673	7433	10292	10342	16938	16938					-0.00904591113294373
HPNLVVGGTY	10	Unmodified	_HPNLVVGGTY_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.77783203125	2	528.777274	1055.53999	0.10965	5.7979E-05	0.041097	2.1731E-05	0.15074	7.971E-05	528.7773381954687	33.425	0.37032	33.425	33.327	33.698	0					17	9	2	0	0	0	0.33468	1	12345	12345		69.628	35.455	1	720120			16674	1583	10293	10343	16939	16939					0.014445723004882893
HPNLVVGGTY	10	Unmodified	_HPNLVVGGTY_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.77734375	2	528.777274	1055.53999	1.7434	0.00092188	-1.1419	-0.00060383	0.60148	0.00031805	528.7764252006299	33.453	0.39407	33.453	33.296	33.69	0					25	9	4	0	0	0	0.36432	1	12789	12789		65.465	19.493	1	886490			16675	1583	10293	10343	16940	16940					0.014445723004882893
HPNMTEKLSS	10	Unmodified	_HPNMTEKLSS_					0	0	0			REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.2761840820312	2	572.27678	1142.53901	-0.027922	-1.5979E-05	-0.69581	-0.0003982	-0.72373	-0.00041417	572.2761843035336	21.248	0.31698	21.248	21.192	21.509	0					11	6	3	0	0	0	0.46128	1	7032	7032		49.536	1.5765	1	153200	+		16676	17430	10294	10344	16941	16941					-0.02656010130726827
HPNNVVSVKY	10	Unmodified	_HPNNVVSVKY_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;ENST00000547733.1_1_12:39688228-39705384:-|nuORF	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.8097534179688	2	578.809105	1155.60366	1.4888	0.0008617	-0.84736	-0.00049046	0.64139	0.00037124	578.8086605258953	24.799	0.11984	24.799	24.719	24.838	0					5	3	2	0	0	0	0.36476	1	7386	7386		60.118	25.946	1	53494			16677	4303	10295	10345	16942	16942					0.03207932737564079
HPNNVVSVKY	10	Unmodified	_HPNNVVSVKY_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;ENST00000547733.1_1_12:39688228-39705384:-|nuORF	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.8094482421875	2	578.809105	1155.60366	-0.058845	-3.406E-05	0.71035	0.00041116	0.6515	0.0003771	578.8096213509583	24.827	0.1787	24.827	24.734	24.913	0					13	6	4	0	0	0	0.12763	1	7643	7643		90.601	29.629	1	130870			16678	4303	10295	10345	16943	16943					0.03207932737564079
HPNNVVSVKY	10	Unmodified	_HPNNVVSVKY_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;ENST00000547733.1_1_12:39688228-39705384:-|nuORF	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8095092773438	2	578.809105	1155.60366	1.6459	0.00095265	-0.95244	-0.00055128	0.69345	0.00040137	578.8084822856586	25.048	0.31632	25.048	24.94	25.256	0					13	6	3	0	0	0	0.019261	1	8854	8854		125.71	48.395	1	1043100			16679	4303	10295	10345	16944	16944					0.03207932737564079
HPNNVVSVKY	10	Unmodified	_HPNNVVSVKY_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;ENST00000547733.1_1_12:39688228-39705384:-|nuORF	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.8095703125	2	578.809105	1155.60366	0.58338	0.00033767	0.43433	0.00025139	1.0177	0.00058906	578.8092004635416	24.912	0.19798	24.912	24.814	25.012	0					6	4	2	0	0	0	0.04084	1	7835	7835		112.41	21.81	1	70253			16680	4303	10295	10345	16945	16945					0.03207932737564079
HPNNVVSVKY	10	Unmodified	_HPNNVVSVKY_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;ENST00000547733.1_1_12:39688228-39705384:-|nuORF	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.8094482421875	2	578.809105	1155.60366	3.2584	0.001886	-2.5017	-0.001448	0.75672	0.000438	578.8076345228412	24.987	0.51086	24.987	24.787	25.298	0					15	10	3	0	0	0	0.0098546	1	8702	8702		143.37	39.317	1	939170			16681	4303	10295	10345	16946	16946					0.03207932737564079
HPNQEAHSL	9	Unmodified	_HPNQEAHSL_					0	0	0		nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF	nc|ENSG00000073060|Q8WTV0-3|SCARB1	nc|ENSG00000073060|Q8WTV0-3|SCARB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7468872070312	2	516.746505	1031.47846	1.2667	0.00065456	0.46342	0.00023947	1.7301	0.00089403	516.7462582021251	16.749	0.20828	16.749	16.662	16.87	0					11	5	3	0	0	0	0.19605	1	4613	4613		62.107	14.45	1	307110			16682	1507	10296	10346	16947	16947					-0.036023593988147695
HPNQEAHSL	9	Unmodified	_HPNQEAHSL_					0	0	0		nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF	nc|ENSG00000073060|Q8WTV0-3|SCARB1	nc|ENSG00000073060|Q8WTV0-3|SCARB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7466430664062	2	516.746505	1031.47846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.731	1	16.731	16.231	17.231	0								0	0	0	0.082437	1	4692	4692		76.774	21.27	1				16683	1507	10296	10346	16948	16948					-0.036023593988147695
HPNSAIILHY	10	Unmodified	_HPNSAIILHY_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.812255859375	2	582.811648	1163.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.177	1	32.177	31.677	32.677	0								0	0	0	0.29806	1	12205	12205		51.193	23.111	1				16684	3404	10297	10347	16949	16949					0.03348236600186283
HPNSAIILHY	10	Unmodified	_HPNSAIILHY_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.811767578125	2	582.811648	1163.60874	0.12239	7.1331E-05	0.0049683	2.8956E-06	0.12736	7.4226E-05	582.8115801654191	32.076	0.46944	32.076	31.969	32.438	0					16	9	3	0	0	0	0.097781	1	12069	12069		95.815	26.188	1	312070			16685	3404	10297	10347	16950	16950					0.03348236600186283
HPPATAAH	8	Unmodified	_HPPATAAH_					0	0	0			REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF	REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.20465087890625	2	401.203744	800.392936	0.67122	0.00026929	1.6703	0.00067011	2.3415	0.00093941	401.2042976623761	34.407	0.21472	34.407	34.306	34.521	0					11	5	3	0	0	0	0.79293	1	12798	12798		15.636	0	1	242050	+		16686	15263	10298	10348	16951	16951					-0.015244797938294141
HPPGDTMSLF	10	Unmodified	_HPPGDTMSLF_					0	0	0		ENST00000462794.1_1_22:36912452-36912849:-|nuORF	ENST00000462794.1_1_22:36912452-36912849:-|nuORF	ENST00000462794.1_1_22:36912452-36912849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.25634765625	2	551.255317	1100.49608	1.7505	0.00096495	-0.1712	-9.4377E-05	1.5793	0.00087057	551.2552783580674	16.554	0.38197	16.554	16.464	16.846	0					14	9	2	0	0	0	0.4943	1	4519	4519		45.952	1.5748	1	640150			16687	9751	10299	10349	16952	16952					-0.050147801881848864
HPPGTKSA	8	Unmodified	_HPPGTKSA_					0	0	0		nc|ENSG00000106948|Q7Z591-5|AKNA;nc|ENSG00000106948|Q7Z591-8|AKNA;nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA	nc|ENSG00000106948|Q7Z591-5|AKNA	nc|ENSG00000106948|Q7Z591-5|AKNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.71124267578125	2	397.711402	793.408252	0.9188	0.00036542	-1.0034	-0.00039906	-0.08459	-3.3642E-05	397.7109544833946	24.055	0.22704	24.055	23.961	24.188	0					9	5	3	0	0	0	0.65276	1	8064	8064		40.573	6.4001	1	297380			16688	2466	10300	10350	16953	16953					0.003283870033783387
HPPGTKSA	8	Unmodified	_HPPGTKSA_					0	0	0		nc|ENSG00000106948|Q7Z591-5|AKNA;nc|ENSG00000106948|Q7Z591-8|AKNA;nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA	nc|ENSG00000106948|Q7Z591-5|AKNA	nc|ENSG00000106948|Q7Z591-5|AKNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.71136474609375	2	397.711402	793.408252	0.37032	0.00014728	-0.65054	-0.00025873	-0.28022	-0.00011145	397.711284168702	24.02	0.21624	24.02	23.914	24.13	0					7	4	2	0	0	0	0.70055	1	8242	8242		33.516	0	1	278030			16689	2466	10300	10350	16954	16954					0.003283870033783387
HPPLITDL	8	Unmodified	_HPPLITDL_					0	0	0			REV__EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant	REV__EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2579040527344	2	453.258185	904.501818	-0.122	-5.5298E-05	-0.35685	-0.00016175	-0.47885	-0.00021704	453.2579850969011	33.537	0.54149	33.537	33.309	33.851	0					38	13	5	0	0	0	0.6282	1	12983	12983		44.531	5.5096	1	6395500	+		16690	12772	10301	10351	16955	16955					0.04574686385797122
HPPPVSKSEI	10	Unmodified	_HPPPVSKSEI_					0	0	0		ENSG00000110042|ENST00000227451|DTX4;nc|ENSG00000110042|Q9Y2E6-2|DTX4;DTX4|p.K396Nfs*34|2|0.25|ENSG00000110042|chr11:59191136-59191136|A/-|frameshift_variant	ENSG00000110042|ENST00000227451|DTX4	ENSG00000110042|ENST00000227451|DTX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.2012023925781	3	364.201229	1089.58186	1.0799	0.00039329	-1.2416	-0.00045221	-0.16177	-5.8917E-05	364.2007938658321	16.089	0.27114	16.089	15.98	16.251	0					14	5	3	0	0	0	0.61887	1	4394	4394		36.447	36.447	1	930380			16691	2605	10302	10352	16956	16956					0.04065127988997119
HPPRHCRSL	9	Unmodified	_HPPRHCRSL_					0	0	0		ENST00000433688.2_2_11:63531028-63531832:-|nuORF	ENST00000433688.2_2_11:63531028-63531832:-|nuORF	ENST00000433688.2_2_11:63531028-63531832:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7904663085938	2	551.787984	1101.56142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.077	1	37.077	36.577	37.577	0								0	0	0	0.14517	1	14480	14480		60.972	0.85368	1				16692	9512	10303	10353	16957	16957					0.014696788482069678
HPQAINQQF	9	Unmodified	_HPQAINQQF_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.7732543945312	2	541.772522	1081.53049	1.0869	0.00058887	-0.47361	-0.00025659	0.61333	0.00033228	541.772173913365	27.147	0.32396	27.147	27.001	27.325	0					20	12	3	0	0	0	0.2873	1	8317	8317		51.335	8.4712	1	161070			16693	3095	10304	10354	16958	16958					-0.007011959850387939
HPQAINQQF	9	Unmodified	_HPQAINQQF_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.77294921875	2	541.772522	1081.53049	0.29826	0.00016159	0.26848	0.00014545	0.56674	0.00030705	541.7726566300735	27.415	0.46848	27.415	27.237	27.706	0					26	11	3	0	0	0	0.018419	1	9561	9561		124.59	47.82	1	1351200			16694	3095	10304	10354	16959	16959					-0.007011959850387939
HPQAINQQF	9	Unmodified	_HPQAINQQF_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7733764648438	2	541.772522	1081.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.146	1	27.146	26.646	27.646	0								0	0	0	0.016223	1	8618	8618		102.77	28.518	1				16695	3095	10304	10354	16960	16960					-0.007011959850387939
HPQAINQQF	9	Unmodified	_HPQAINQQF_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7723999023438	2	541.772522	1081.53049	0.31368	0.00016994	0.16539	8.9604E-05	0.47907	0.00025955	541.7725441982941	27.397	0.21901	27.397	27.287	27.506	0					7	4	2	0	0	0	0.26904	1	9936	9936		53.351	12.573	1	159430			16696	3095	10304	10354	16961	16961					-0.007011959850387939
HPQAINQQF	9	Unmodified	_HPQAINQQF_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7731323242188	2	541.772522	1081.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.212	1	27.212	26.712	27.712	0								0	0	0	0.11184	1	8872	8872		68.787	25.923	1				16697	3095	10304	10354	16962	16962					-0.007011959850387939
HPQPAPCMLL	10	Unmodified	_HPQPAPCMLL_					0	0	0		ENST00000378017.7_1_8:125564308-125564464:-|nuORF	ENST00000378017.7_1_8:125564308-125564464:-|nuORF	ENST00000378017.7_1_8:125564308-125564464:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.775146484375	2	553.777905	1105.54126	0.61614	0.00034121	-1.6151	-0.00089441	-0.99896	-0.0005532	553.7766237162883	36.99	0.17786	36.99	36.892	37.069	0					9	5	2	0	0	0	0.47621	1	13977	13977		47.916	0.25827	1	95911			16698	9059	10305	10355	16963	16963					-0.007292529266351266
HPQPGAVEL	9	Unmodified	_HPQPGAVEL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2505798339844	2	474.250892	946.48723	-1.5996	-0.00075861	0.43059	0.00020421	-1.169	-0.0005544	474.2512259712885	28.817	0.282	28.817	28.714	28.996	0					24	10	3	0	0	0	0.47038	1	9303	9303		35.618	5.1146	1	278870			16699	1720	10306	10356	16964	16964					0.011846142376612079
HPQPGAVEL	9	Unmodified	_HPQPGAVEL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2505798339844	2	474.250892	946.48723	0.60851	0.00028859	-1.6506	-0.0007828	-1.0421	-0.00049421	474.2501254691889	29.107	0.51811	29.107	28.911	29.429	0					25	11	4	0	0	0	0.17854	1	10711	10711		64.207	6.7546	1	1318000			16700	1720	10306	10356	16965	16965					0.011846142376612079
HPQPGAVEL	9	Unmodified	_HPQPGAVEL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2506408691406	2	474.250892	946.48723	-0.46438	-0.00022023	-2.0327	-0.00096401	-2.4971	-0.0011842	474.2504068579079	28.878	0.31435	28.878	28.75	29.064	0					11	7	2	0	0	0	0.33044	1	9639	9639		47.657	10.629	1	174420			16701	1720	10306	10356	16966	16966					0.011846142376612079
HPQPTQVQF	9	Unmodified	_HPQPTQVQF_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2749633789062	2	541.274898	1080.53524	1.0476	0.00056702	-0.85836	-0.00046461	0.1892	0.00010241	541.2745037121906	29.983	0.27347	29.983	29.836	30.109	0					21	10	3	0	0	0	0.25716	1	9489	9489		54.776	13.998	1	155910			16702	6369	10307	10357	16967	16967					-0.0018031184229130304
HPQPTQVQF	9	Unmodified	_HPQPTQVQF_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.27490234375	2	541.274898	1080.53524	0.29082	0.00015741	0.081566	4.415E-05	0.37239	0.00020156	541.2750414274489	30.243	0.52613	30.243	29.999	30.526	0					37	13	4	0	0	0	0.056004	1	10872	10872		93.143	18.1	1	989420			16703	6369	10307	10357	16968	16968					-0.0018031184229130304
HPQPTQVQF	9	Unmodified	_HPQPTQVQF_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.275146484375	2	541.274898	1080.53524	2.0151	0.0010907	-1.3883	-0.00075147	0.6268	0.00033927	541.2742497719303	30.229	0.57019	30.229	29.993	30.563	0					31	12	4	0	0	0	0.22837	1	11287	11287		58.23	8.7884	1	790790			16704	6369	10307	10357	16969	16969					-0.0018031184229130304
HPQPTQVQF	9	Unmodified	_HPQPTQVQF_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2752075195312	2	541.274898	1080.53524	0.31182	0.00016878	0.042984	2.3266E-05	0.3548	0.00019205	541.2749132714391	30.257	0.23746	30.257	30.163	30.4	0					11	5	3	0	0	0	0.28897	1	11281	11281		51.193	1.7511	1	186900			16705	6369	10307	10357	16970	16970					-0.0018031184229130304
HPQPTQVQF	9	Unmodified	_HPQPTQVQF_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2755126953125	2	541.274898	1080.53524	-1.4837	-0.00080308	2.379	0.0012877	0.89527	0.00048459	541.2760767399584	30.056	0.36044	30.056	29.858	30.218	0					18	9	3	0	0	0	0.21263	1	10175	10175		60.118	3.3972	1	277990			16706	6369	10307	10357	16971	16971					-0.0018031184229130304
HPQQKVAVY	9	Unmodified	_HPQQKVAVY_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF;ENSG00000102871|ENST00000345057|TRADD	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2931518554688	2	535.293091	1068.57163	1.2262	0.00065638	0.21819	0.0001168	1.4444	0.00077318	535.2930742726904	20.068	0.20547	20.068	19.997	20.203	0					12	6	3	0	0	0	0.021961	1	5302	5302		90.777	35.272	1	249990			16707	10758	10308	10358	16972	16972					0.04008565054414248
HPQQKVAVY	9	Unmodified	_HPQQKVAVY_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF;ENSG00000102871|ENST00000345057|TRADD	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2935180664062	2	535.293091	1068.57163	2.2095	0.0011827	-0.31298	-0.00016753	1.8965	0.0010152	535.2921849753851	20.437	0.57316	20.437	20.29	20.863	0					32	12	4	0	0	0	0.014688	1	6330	6330		102.77	49.422	1	1692700			16708	10758	10308	10358	16973	16973					0.04008565054414248
HPQQKVAVY	9	Unmodified	_HPQQKVAVY_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF;ENSG00000102871|ENST00000345057|TRADD	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.293212890625	2	535.293091	1068.57163	1.2077	0.00064646	-0.75377	-0.00040349	0.45391	0.00024298	535.2927015460618	20.335	0.1671	20.335	20.229	20.396	0					8	3	3	0	0	0	0.028876	1	6567	6567		94.006	46.091	1	270830			16709	10758	10308	10358	16974	16974					0.04008565054414248
HPQQKVAVY	9	Unmodified	_HPQQKVAVY_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF;ENSG00000102871|ENST00000345057|TRADD	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2938842773438	2	535.293091	1068.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.168	1	20.168	19.668	20.668	0								0	0	0	0.0537	1	5620	5620		79.451	18.479	1				16710	10758	10308	10358	16975	16975					0.04008565054414248
HPQQKVAVY	9	Unmodified	_HPQQKVAVY_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF;ENSG00000102871|ENST00000345057|TRADD	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2937622070312	2	535.293091	1068.57163	1.0832	0.00057981	0.99233	0.00053119	2.0755	0.001111	535.2929479917516	20.181	0.19212	20.181	20.087	20.279	0					6	4	2	0	0	0	0.21263	1	5639	5639		53.351	27.901	1	196170			16711	10758	10308	10358	16976	16976					0.04008565054414248
HPQQKVAVY	9	Unmodified	_HPQQKVAVY_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF;ENSG00000102871|ENST00000345057|TRADD	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2933349609375	2	535.293091	1068.57163	0.70673	0.00037831	0.054787	2.9327E-05	0.76152	0.00040764	535.2928796944294	20.302	0.5664	20.302	20.193	20.759	0					17	11	2	0	0	0	0.0061615	1	6436	6436		124.59	69.09	1	1755900			16712	10758	10308	10358	16977	16977					0.04008565054414248
HPQQKVAVY	9	Unmodified	_HPQQKVAVY_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF;ENSG00000102871|ENST00000345057|TRADD	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.29345703125	2	535.293091	1068.57163	1.8805	0.0010066	0.5279	0.00028258	2.4084	0.0012892	535.2923626820223	20.336	0.66573	20.336	20.226	20.891	0					20	13	4	0	0	0	0.023928	1	6456	6456		99.375	38.403	1	1353600			16713	10758	10308	10358	16978	16978					0.04008565054414248
HPQTHETAL	9	Unmodified	_HPQTHETAL_					0	0	0		TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant;ENSG00000107854|ENST00000371627|TNKS2	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2569580078125	2	517.256705	1032.49886	0.031257	1.6168E-05	0.052467	2.7139E-05	0.083724	4.3307E-05	517.2569777850418	17.697	0.084187	17.697	17.657	17.741	0					6	2	3	0	0	0	0.14603	1	4493	4493		68.787	22.835	1	175290			16714	2498	10309	10359	16979	16979					-0.0160918873900755
HPRAGGHALR	10	Unmodified	_HPRAGGHALR_					0	0	0			REV__ENSG00000176472|ENST00000314228|ZNF575	REV__ENSG00000176472|ENST00000314228|ZNF575	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.2993774414062	2	536.299573	1070.58459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.895	1	19.895	19.395	20.395	0								0	0	0	0.28607	1	5234	5234		49.442	15.269	1		+		16715	16656	10310	10360	16980	16980					0.05212440957166109
HPRGFLEIK	9	Unmodified	_HPRGFLEIK_					0	0	0			REV__ENSG00000165819|ENST00000298717|METTL3	REV__ENSG00000165819|ENST00000298717|METTL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.21197509765625	3	366.213581	1095.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.004	1	12.004	11.504	12.504	0								0	0	0	0.34845	1	2452	2452		25.574	2.1961	1		+		16716	16072	10311	10361	16981	16981					0.07492844325383885
HPRMHIDQ	8	Unmodified	_HPRMHIDQ_					0	0	0		ENST00000393784.7_1_5:172377864-172378200:+|nuORF	ENST00000393784.7_1_5:172377864-172378200:+|nuORF	ENST00000393784.7_1_5:172377864-172378200:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2567749023438	2	517.253443	1032.49233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.983	1	17.983	17.483	18.483	0								0	0	0	1.7419	1	5293	5293		47.657	1.6851	1				16717	9162	10312	10362	16982	16982					-0.022614051713844674
HPSEAHILF	9	Unmodified	_HPSEAHILF_					0	0	0		nc|ENSG00000066248|Q8N5V2-2|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7731323242188	2	525.771991	1049.52943	0.58421	0.00030716	0.91702	0.00048214	1.5012	0.00078931	525.7724502507428	33.038	0.44181	33.038	32.875	33.317	0					20	9	3	0	0	0	0.23186	1	12518	12518		57.811	8.3697	1	425560			16718	1389	10313	10363	16983	16983					0.006645896460213407
HPSFLQLLA	9	Unmodified	_HPSFLQLLA_					0	0	0		ZNF292|p.D1450H|1|0.73|ENSG00000188994|chr6:87257977-87257977|G/C|missense_variant	ZNF292|p.D1450H|1|0.73|ENSG00000188994|chr6:87257977-87257977|G/C|missense_variant	ZNF292|p.D1450H|1|0.73|ENSG00000188994|chr6:87257977-87257977|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2916870117188	2	513.292559	1024.57057	1.4506	0.0007446	-4.3406	-0.002228	-2.8899	-0.0014834	513.2910640637093	39.308	0.23079	39.308	39.157	39.387	0					11	5	3	0	0	0	0.48389	1	15553	15553		34.173	0.65696	1	134390			16719	23149	10314	10364	16984	16984					0.05926350685535908
HPSGATPTL	9	Unmodified	_HPSGATPTL_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant;ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7296142578125	2	440.729792	879.445031	0.56303	0.00024814	-1.0786	-0.00047535	-0.51553	-0.00022721	440.7293478537692	24.227	0.31994	24.227	24.052	24.372	0					14	7	2	0	0	0	0.062676	1	8142	8142		90.777	24.347	1	404330			16720	1238	10315	10365	16985	16985					0.00048638829287028784
HPSGATPTL	9	Unmodified	_HPSGATPTL_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant;ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.7295227050781	2	440.729792	879.445031	0.55499	0.0002446	-1.0305	-0.00045419	-0.47555	-0.00020959	440.7293636926126	24.155	0.46271	24.155	23.947	24.41	0					19	9	3	0	0	0	0.18605	1	8457	8457		63.306	5.495	1	603230			16721	1238	10315	10365	16986	16986					0.00048638829287028784
HPSGTALHY	9	Unmodified	_HPSGTALHY_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.74066162109375	2	491.740691	981.466829	1.369	0.00067318	-0.80821	-0.00039743	0.56076	0.00027575	491.740470064788	21.41	0.15128	21.41	21.326	21.477	0					7	5	2	0	0	0	0.45358	1	5898	5898		37.159	6.6555	1	43927			16722	7375	10316	10366	16987	16987					-0.02464556422160058
HPSGTALHY	9	Unmodified	_HPSGTALHY_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.74127197265625	2	491.740691	981.466829	0.47236	0.00023228	-0.82809	-0.00040721	-0.35573	-0.00017493	491.7403074336725	21.718	0.2731	21.718	21.624	21.898	0					11	6	2	0	0	0	0.043797	1	6935	6935		97.473	18.022	1	403150			16723	7375	10316	10366	16988	16988					-0.02464556422160058
HPSGTALHY	9	Unmodified	_HPSGTALHY_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7403564453125	2	491.740691	981.466829	-0.060586	-2.9792E-05	-0.7687	-0.000378	-0.82929	-0.00040779	491.7403320457913	21.634	0.16607	21.634	21.526	21.692	0					8	3	3	0	0	0	0.43426	1	7217	7217		38.806	12.113	1	244330			16724	7375	10316	10366	16989	16989					-0.02464556422160058
HPSHVQPAY	9	Unmodified	_HPSHVQPAY_					0	0	0		nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ATXN2|p.I1070T|1|0.42|ENSG00000204842|chr12:111470215-111470215|A/G|missense_variant;ENST00000468920.2_1_12:111893805-111895209:-|nuORF;nc|ENSG00000204842|Q99700-3|ATXN2;ENST00000482777.5_1_12:111893805-111908601:-|nuORF	nc|ENSG00000204842|Q99700-5|ATXN2;ENST00000468920.2_1_12:111893805-111895209:-|nuORF	nc|ENSG00000204842|Q99700-5|ATXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2540283203125	2	518.253966	1034.49338	1.3354	0.00069206	-1.4487	-0.00075077	-0.11328	-5.8706E-05	518.2533759681687	19.046	0.25764	19.046	18.924	19.182	0					14	6	3	0	0	0	0.087861	1	5691	5691		82.241	16.775	1	401810			16725	7725;9818	10317	10367	16990	16990					-0.02248867530829557
HPSKSHIEE	9	Unmodified	_HPSKSHIEE_					0	0	0			REV__ENST00000434724.6_1_16:11966790-11966895:-|nuORF	REV__ENST00000434724.6_1_16:11966790-11966895:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2642211914062	2	532.261988	1062.50942	1.7392	0.00092573	2.5506	0.0013576	4.2899	0.0022833	532.2631204360961	36.521	0.95488	36.521	36.411	37.366	0					56	19	5	0	0	0	0.37197	1	14544	14544		44.117	5.3107	1	14801000	+		16726	19197	10318	10368	16991	16991					-0.019332060845727028
HPSLGSPG	8	Unmodified	_HPSLGSPG_					0	0	0		ENST00000281938.6_1_12:119617352-119617418:+|nuORF;HSPB8|p.P89Hfs*12|1|0.47|ENSG00000152137|chr12:119179572-119179572|C/-|frameshift_variant	ENST00000281938.6_1_12:119617352-119617418:+|nuORF	ENST00000281938.6_1_12:119617352-119617418:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.1902770996094	2	376.190303	750.366053	0.46271	0.00017407	-0.46993	-0.00017678	-0.0072229	-2.7172E-06	376.190146852244	18.485	0.47096	18.485	18.173	18.644	0					16	9	3	0	0	0	0.57802	1	5692	5692		52.299	2.2746	1	557900			16727	8414	10319	10369	16992	16992					-0.01911588404993836
HPSLNAAM	8	Unmodified	_HPSLNAAM_					0	0	0		ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-3|GREB1;nc|ENSG00000196208|Q4ZG55-2|GREB1;GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	ENSG00000196208|ENST00000381486|GREB1;GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.705322265625	2	420.705263	839.395972	-1.2646	-0.000532	1.1496	0.00048362	-0.115	-4.8381E-05	420.7057929733074	21.516	0.22329	21.516	21.386	21.61	0					11	7	2	0	0	0	0.59411	1	6198	6198		50.025	2.1089	1	60845			16728	7339;11166	10320	10370	16993	16993					-0.030149727313187213
HPSLQPEEY	9	Unmodified	_HPSLQPEEY_					0	0	0		ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.2568969726562	2	550.256371	1098.49819	1.2806	0.00070467	-0.57708	-0.00031754	0.70355	0.00038713	550.2560196284693	29.297	0.37173	29.297	29.151	29.523	0					29	13	3	0	0	0	0.10915	1	9210	9210		77.318	33.201	1	161070			16729	3999	10321	10371	16994	16994					-0.0471202817871017
HPSLQPEEY	9	Unmodified	_HPSLQPEEY_					0	0	0		ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2569580078125	2	550.256371	1098.49819	0.54637	0.00030064	0.58928	0.00032426	1.1357	0.0006249	550.2566234241584	29.553	0.37926	29.553	29.394	29.773	0					26	9	3	0	0	0	0.095583	1	10543	10543		80.455	38.058	1	919290			16730	3999	10321	10371	16995	16995					-0.0471202817871017
HPSLQPEEY	9	Unmodified	_HPSLQPEEY_					0	0	0		ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2567138671875	2	550.256371	1098.49819	1.6929	0.00093156	-0.7366	-0.00040532	0.95634	0.00052623	550.2556769696598	29.574	0.35509	29.574	29.412	29.767	0					19	7	3	0	0	0	0.078509	1	10969	10969		85.161	35.719	1	605420			16731	3999	10321	10371	16996	16996					-0.0471202817871017
HPSLQPEEY	9	Unmodified	_HPSLQPEEY_					0	0	0		ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	ENST00000552787.5_1_12:58089581-58109758:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2568359375	2	550.256371	1098.49819	0.19713	0.00010847	0.056924	3.1323E-05	0.25405	0.00013979	550.2564435270859	29.591	0.20418	29.591	29.446	29.65	0					7	4	2	0	0	0	0.46194	1	10962	10962		36.447	5.9431	1	104640			16732	3999	10321	10371	16997	16997					-0.0471202817871017
HPSNVLHFF	9	Unmodified	_HPSNVLHFF_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595443.5_1_19:39327988-39329682:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2800903320312	2	549.279983	1096.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.748	1	40.748	40.248	41.248	0								0	0	0	0.040385	1	16203	16203		64.207	37.411	1				16733	2308;10998	10322	10372	16998	16998					0.0010029588295310532
HPSVEEKLTY	10	Unmodified	_HPSVEEKLTY_					0	0	0			REV__tr|U7SU31|U7SU31_FUSNUATP-dependentdethiobiotinsynthetaseBioDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioDPE=3SV=1	REV__tr|U7SU31|U7SU31_FUSNUATP-dependentdethiobiotinsynthetaseBioDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	601.8053588867188	2	601.806228	1201.5979	1.5593	0.0009384	-0.83401	-0.00050191	0.7253	0.00043649	601.805732481533	29.552	0.69867	29.552	29.421	30.119	0					62	26	3	0	0	0	0.49411	1	9448	9448		45.972	0	1	550830	+		16734	21957	10323	10373	16999	16999					0.005167894352325675
HPSVEEKLTY	10	Unmodified	_HPSVEEKLTY_					0	0	0			REV__tr|U7SU31|U7SU31_FUSNUATP-dependentdethiobiotinsynthetaseBioDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioDPE=3SV=1	REV__tr|U7SU31|U7SU31_FUSNUATP-dependentdethiobiotinsynthetaseBioDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.806396484375	2	601.806228	1201.5979	-0.58471	-0.00035188	0.87748	0.00052807	0.29276	0.00017619	601.8067777262296	29.622	0.64491	29.622	29.457	30.102	0					56	24	3	0	0	0	0.2978	1	9630	9630		67.494	0	1	453710	+		16735	21957	10323	10373	17000	17000					0.005167894352325675
HPTAFVVSY	9	Unmodified	_HPTAFVVSY_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.760986328125	2	510.761092	1019.50763	3.0716	0.0015688	-1.4608	-0.0007461	1.6108	0.00082274	510.7597175709009	37.907	1.1935	37.907	37.535	38.729	0					62	25	4	0	0	0	0.13519	1	14831	14831		71.296	4.8664	1	1970200			16736	6087	10324	10374	17001	17001					-0.001342151025255589
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7327575683594	2	500.732729	999.450904	-0.046533	-2.3301E-05	0.23216	0.00011625	0.18563	9.295E-05	500.73287853436193	22.691	0.39403	22.691	22.524	22.918	0					36	12	4	0	0	0	0.26904	1	6413	6413		53.351	0	1	752260			16737	1814	10325	10375	17002	17002					-0.04884307449719927
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.732666015625	2	500.732729	999.450904	-0.13631	-6.8255E-05	0.26157	0.00013098	0.12526	6.2721E-05	500.73289092714344	23.004	0.42946	23.004	22.834	23.263	0					32	10	4	0	0	0	0.062676	1	7523	7523		90.777	16.802	1	6104400			16738	1814	10325	10375	17003	17003					-0.04884307449719927
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.73211669921875	2	500.732729	999.450904	-0.99175	-0.0004966	1.1987	0.00060023	0.20696	0.00010363	500.7330852104521	22.696	0.74726	22.696	22.291	23.039	0					50	24	3	0	0	0	0.087582	1	6699	6699		82.305	16.502	1	977170			16739	1814	10325	10375	17004	17004					-0.04884307449719927
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7325439453125	2	500.732729	999.450904	0.91784	0.00045959	-1.2891	-0.00064548	-0.37123	-0.00018589	500.73193990964637	22.903	0.76126	22.903	22.451	23.212	0					41	15	4	0	0	0	0.036372	1	7804	7804		102.77	25.999	1	5142400			16740	1814	10325	10375	17005	17005					-0.04884307449719927
HPTDPLTSF	9	Unmodified	_HPTDPLTSF_					0	0	0		nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;THEMIS2|p.P552Hfs*28|1|0.28|ENSG00000130775|chr1:27882969-27882970|-/CC|frameshift_variant;ENSG00000130775|ENST00000373921|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7480163574219	2	507.748182	1013.48181	1.3013	0.00066074	-1.1926	-0.00060553	0.10873	5.5207E-05	507.7475181599756	39.917	0.75941	39.917	39.469	40.229	0					40	17	3	0	0	0	0.063823	1	15764	15764		73.975	13.003	1	461070			16741	11520	10326	10376	17006	17006					-0.024391093448116408
HPTIISESF	9	Unmodified	_HPTIISESF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7642211914062	2	515.763832	1029.51311	-0.080017	-4.127E-05	0.77166	0.00039799	0.69164	0.00035672	515.7644839724602	37.857	0.24905	37.857	37.759	38.008	0					35	14	3	0	0	0	0.2873	1	12773	12773		51.335	12.083	1	162420			16742	2913	10327	10377	17007	17007					-0.00046536310719602625
HPTIISESF	9	Unmodified	_HPTIISESF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7647094726562	2	515.763832	1029.51311	1.439	0.00074217	-1.1109	-0.00057298	0.32803	0.00016919	515.763480799978	38.077	0.40759	38.077	37.959	38.366	0					37	14	4	0	0	0	0.14603	1	14900	14900		68.787	7.8149	1	1850900			16743	2913	10327	10377	17008	17008					-0.00046536310719602625
HPTIISESF	9	Unmodified	_HPTIISESF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7640991210938	2	515.763832	1029.51311	1.5102	0.00077891	-1.7423	-0.00089863	-0.23211	-0.00011971	515.7627890939435	38.031	0.38004	38.031	37.886	38.267	0					13	8	2	0	0	0	0.05357	1	14903	14903		94.006	28.109	1	468210			16744	2913	10327	10377	17009	17009					-0.00046536310719602625
HPTMTAAL	8	Unmodified	_HPTMTAAL_					0	0	0		nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2;TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant;TRPM2|p.A785Rfs*17|1|0.49|ENSG00000142185|chr21:44401707-44401707|C/-|frameshift_variant;nc|ENSG00000142185|O94759-3|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.21533203125	2	421.215463	840.416374	-1.2435	-0.0005238	1.2496	0.00052634	0.0060468	2.547E-06	421.21592444569876	32.978	0.36004	32.978	32.878	33.238	0					20	15	2	0	0	0	0.6282	1	11051	11051		44.531	3.9584	1	87719			16745	4486	10328	10378	17010	17010					-0.01021802071500133
HPTMTAAL	8	Unmodified	_HPTMTAAL_					0	0	0		nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2;TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant;TRPM2|p.A785Rfs*17|1|0.49|ENSG00000142185|chr21:44401707-44401707|C/-|frameshift_variant;nc|ENSG00000142185|O94759-3|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.2149963378906	2	421.215463	840.416374	-0.035771	-1.5067E-05	-0.030591	-1.2885E-05	-0.066362	-2.7953E-05	421.21532315004436	32.945	0.24997	32.945	32.85	33.1	0					11	7	2	0	0	0	0.70055	1	11534	11534		33.516	5.2613	1	52664			16746	4486	10328	10378	17011	17011					-0.01021802071500133
HPTSGVIVL	9	Unmodified	_HPTSGVIVL_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7705993652344	2	461.77146	921.528367	-0.44534	-0.00020565	-0.063678	-2.9405E-05	-0.50902	-0.00023505	461.7715008966228	35.622	0.25198	35.622	35.51	35.762	0					19	12	2	0	0	0	0.49003	1	11660	11660		33.516	8.0654	1	104340			16747	1705	10329	10379	17012	17012					0.064463752771303
HPTSVISGY	9	Unmodified	_HPTSVISGY_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7427062988281	2	480.742899	959.471246	0.035434	1.7035E-05	-0.34303	-0.00016491	-0.3076	-0.00014788	480.74264465708893	29.5	0.28657	29.5	29.388	29.675	0					14	9	2	0	0	0	0.22377	1	9312	9312		58.782	5.4305	1	184560			16748	3170	10330	10380	17013	17013					-0.010110919992371237
HPTSVISGY	9	Unmodified	_HPTSVISGY_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7425231933594	2	480.742899	959.471246	0.51628	0.0002482	-0.92962	-0.00044691	-0.41335	-0.00019871	480.7423527264137	29.76	0.32811	29.76	29.655	29.983	0					19	8	3	0	0	0	0.068692	1	10662	10662		88.643	11.796	1	778630			16749	3170	10330	10380	17014	17014					-0.010110919992371237
HPTSVISGY	9	Unmodified	_HPTSVISGY_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.74273681640625	2	480.742899	959.471246	-1.3664	-0.00065688	1.9231	0.0009245	0.55667	0.00026762	480.7431392378492	29.504	0.24618	29.504	29.434	29.68	0					26	9	4	0	0	0	0.16524	1	9598	9598		65.803	2.4969	1	298510			16750	3170	10330	10380	17015	17015					-0.010110919992371237
HPTSVISGY	9	Unmodified	_HPTSVISGY_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.74267578125	2	480.742899	959.471246	0.6792	0.00032652	-0.025131	-1.2081E-05	0.65407	0.00031444	480.74225862471565	29.758	0.45747	29.758	29.65	30.107	0					21	9	3	0	0	0	0.043797	1	11045	11045		97.473	20.626	1	2020700			16751	3170	10330	10380	17016	17016					-0.010110919992371237
HPTSVISGY	9	Unmodified	_HPTSVISGY_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7425231933594	2	480.742899	959.471246	-0.29862	-0.00014356	0.10538	5.066E-05	-0.19324	-9.2897E-05	480.74285790281704	29.542	0.3602	29.542	29.379	29.739	0					16	9	3	0	0	0	0.068692	1	9945	9945		88.643	22.84	1	279610			16752	3170	10330	10380	17017	17017					-0.010110919992371237
HPTSVISGY	9	Unmodified	_HPTSVISGY_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7427062988281	2	480.742899	959.471246	-2.9246	-0.001406	4.3147	0.0020742	1.3901	0.00066827	480.7439015389977	29.553	0.25117	29.553	29.443	29.694	0					13	6	3	0	0	0	0.18605	1	9938	9938		63.306	3.0123	1	194260			16753	3170	10330	10380	17018	17018					-0.010110919992371237
HPTSVISGY	9	Unmodified	_HPTSVISGY_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7427062988281	2	480.742899	959.471246	2.3313	0.0011208	-1.2488	-0.00060037	1.0825	0.00052039	480.7414574225518	29.692	0.41417	29.692	29.566	29.98	0					16	8	2	0	0	0	0.11118	1	10907	10907		76.847	11.043	1	1433600			16754	3170	10330	10380	17019	17019					-0.010110919992371237
HPTVVISAY	9	Unmodified	_HPTVVISAY_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7683410644531	2	493.768917	985.523281	0.6407	0.00031636	-0.81465	-0.00040225	-0.17395	-8.5892E-05	493.7684789644786	33.762	0.62399	33.762	33.561	34.185	0					24	15	2	0	0	0	0.18605	1	12922	12922		63.306	2.3343	1	2361300			16755	5559	10331	10381	17020	17020					0.029940714145254788
HPTVVISAY	9	Unmodified	_HPTVVISAY_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7687683105469	2	493.768917	985.523281	0.025203	1.2444E-05	-0.32547	-0.00016071	-0.30027	-0.00014826	493.76896109668616	33.537	0.27496	33.537	33.414	33.689	0					13	7	2	0	0	0	0.26904	1	11771	11771		53.351	1.0523	1	229110			16756	5559	10331	10381	17021	17021					0.029940714145254788
HPTVVISAY	9	Unmodified	_HPTVVISAY_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7686767578125	2	493.768917	985.523281	0.8811	0.00043506	-1.7235	-0.00085099	-0.84235	-0.00041593	493.76822676848343	33.692	0.47174	33.692	33.533	34.005	0					18	10	2	0	0	0	0.1236	1	12823	12823		73.975	8.1716	1	1701600			16757	5559	10331	10381	17022	17022					0.029940714145254788
HPTWKAWE	8	Unmodified	_HPTWKAWE_					0	0	0			REV__ENSG00000243627|ENST00000450895|SMIM34	REV__ENSG00000243627|ENST00000450895|SMIM34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7568969726562	2	527.758884	1053.50321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.371	1	20.371	19.871	20.871	0								0	0	0	1.7419	1	5440	5440		23.042	0	1		+		16758	17703	10332	10382	17023	17023					-0.02139679525430438
HPVFQQESF	9	Unmodified	_HPVFQQESF_					0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.7675170898438	2	559.766906	1117.51926	0.50678	0.00028368	-0.1737	-9.723E-05	0.33308	0.00018645	559.7670164463931	34.791	0.39422	34.791	34.68	35.074	0					27	10	3	0	0	0	0.010494	1	12986	12986		139.97	46.775	1	542370			16759	6235	10333	10383	17024	17024					-0.03480018079198999
HPVFQQESF	9	Unmodified	_HPVFQQESF_					0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7670288085938	2	559.766906	1117.51926	3.4698	0.0019423	-3.9421	-0.0022066	-0.47229	-0.00026437	559.765200521102	34.758	0.70702	34.758	34.555	35.262	0					27	14	3	0	0	0	0.028876	1	13364	13364		110.12	43.691	1	1084400			16760	6235	10333	10383	17025	17025					-0.03480018079198999
HPVKIGDL	8	Unmodified	_HPVKIGDL_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant;SRPK2|p.Q368Sfs*16|1|0.04|ENSG00000135250|chr7:105142416-105142417|-/AGGA|frameshift_variant	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.75775146484375	2	439.758352	877.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.051	1	37.051	36.551	37.551	0								0	0	0	1.7419	1	13271	13271		30.504	3.7075	1				16761	3978	10334	10384	17026	17026					0.058501061056517756
HPVKKEPAE	9	Unmodified	_HPVKKEPAE_					0	0	0		ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7853393554688	2	517.785099	1033.55564	0.048312	2.5015E-05	-0.58273	-0.00030173	-0.53442	-0.00027671	517.7848207086568	29.438	0.37918	29.438	29.234	29.614	0					20	9	3	0	0	0	0.19952	1	10524	10524		54.776	8.8041	1	511490			16762	6774	10335	10385	17027	17027					0.04020858817534645
HPVKLPSR	8	Unmodified	_HPVKLPSR_					0	0	0			REV__ENST00000336349.5_1_11:18637321-18637366:-|nuORF	REV__ENST00000336349.5_1_11:18637321-18637366:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.28466796875	2	467.285069	932.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.229	1	25.229	24.729	25.729	0								0	0	0	1.7419	1	8593	8593		30.504	0.6621	1		+		16763	18414	10336	10386	17028	17028					0.08660903608176795
HPVNAFKLM	9	Unmodified	_HPVNAFKLM_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7875366210938	2	528.786587	1055.55862	0.72159	0.00038157	-1.0638	-0.00056252	-0.3422	-0.00018095	528.7868854204229	34.317	0.35655	34.317	34.15	34.506	0					14	7	3	0	0	0	0.35045	1	13149	13149		45.952	6.9305	1	131190			16764	3291	10337	10387	17029	17029					0.03306410670666082
HPVPQPLQSF	10	Unmodified	_HPVPQPLQSF_					0	0	0		MAFB|p.D125N|1|0.29|ENSG00000204103|chr20:40688478-40688478|C/T|missense_variant;ENSG00000204103|ENST00000373313|MAFB	MAFB|p.D125N|1|0.29|ENSG00000204103|chr20:40688478-40688478|C/T|missense_variant	MAFB|p.D125N|1|0.29|ENSG00000204103|chr20:40688478-40688478|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.3060302734375	2	575.306198	1148.59784	-0.098377	-5.6597E-05	0.37729	0.00021706	0.27892	0.00016046	575.3065475630833	37.72	0.39425	37.72	37.517	37.911	0					25	12	3	0	0	0	0.27065	1	14302	14302		70.816	24.844	1	112540			16765	7671	10338	10388	17030	17030					0.029488342258900957
HPVPQPLQSF	10	Unmodified	_HPVPQPLQSF_					0	0	0		MAFB|p.D125N|1|0.29|ENSG00000204103|chr20:40688478-40688478|C/T|missense_variant;ENSG00000204103|ENST00000373313|MAFB	MAFB|p.D125N|1|0.29|ENSG00000204103|chr20:40688478-40688478|C/T|missense_variant	MAFB|p.D125N|1|0.29|ENSG00000204103|chr20:40688478-40688478|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.3067016601562	2	575.306198	1148.59784	3.3201	0.0019101	-4.2254	-0.0024309	-0.9053	-0.00052083	575.3038279573863	37.662	0.73698	37.662	37.285	38.022	0					38	15	3	0	0	0	0.17315	1	14701	14701		82.75	31.558	1	420010			16766	7671	10338	10388	17031	17031					0.029488342258900957
HPVQHISF	8	Unmodified	_HPVQHISF_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7535095214844	2	482.753601	963.49265	0.57971	0.00027986	-1.0106	-0.00048786	-0.43087	-0.00020801	482.7531656907806	26.134	0.42329	26.134	26.042	26.465	0					23	10	3	0	0	0	0.24622	1	8989	8989		108.09	17.311	1	753540			16767	6525	10339	10389	17032	17032					0.009443378201467567
HPVQHISF	8	Unmodified	_HPVQHISF_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7535705566406	2	482.753601	963.49265	3.4755	0.0016778	-3.5938	-0.0017349	-0.11833	-5.7124E-05	482.75194404615957	25.947	0.27458	25.947	25.771	26.046	0					8	5	2	0	0	0	0.41701	1	8108	8108		68.787	7.8149	1	88172			16768	6525	10339	10389	17033	17033					0.009443378201467567
HPVQHISF	8	Unmodified	_HPVQHISF_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7533874511719	2	482.753601	963.49265	-0.10105	-4.8784E-05	-1.2536	-0.00060519	-1.3547	-0.00065398	482.75329376101035	26.142	0.61064	26.142	25.983	26.594	0					29	12	3	0	0	0	0.24714	1	9285	9285		106.42	15.639	1	919230			16769	6525	10339	10389	17034	17034					0.009443378201467567
HPVQHISF	8	Unmodified	_HPVQHISF_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.75341796875	2	482.753601	963.49265	0.19743	9.531E-05	-0.57685	-0.00027847	-0.37942	-0.00018316	482.7533856790485	25.961	0.36098	25.961	25.789	26.15	0					13	6	3	0	0	0	0.37378	1	8287	8287		73.975	10.668	1	105990			16770	6525	10339	10389	17035	17035					0.009443378201467567
HPVQHISF	8	Unmodified	_HPVQHISF_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.75341796875	2	482.753601	963.49265	-0.60655	-0.00029281	-0.15984	-7.7163E-05	-0.76639	-0.00036998	482.75352611468713	26.064	0.62082	26.064	25.949	26.57	0					30	12	4	0	0	0	0.25102	1	9148	9148		99.375	19.924	1	1378500			16771	6525	10339	10389	17036	17036					0.009443378201467567
HPVRGTLA	8	Unmodified	_HPVRGTLA_					0	0	0		RAE1|p.H285R|1|0.31|ENSG00000101146|chr20:57374635-57374635|A/G|missense_variant	RAE1|p.H285R|1|0.31|ENSG00000101146|chr20:57374635-57374635|A/G|missense_variant	RAE1|p.H285R|1|0.31|ENSG00000101146|chr20:57374635-57374635|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.7482604980469	2	425.748319	849.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.068	1	20.068	19.568	20.568	0								0	0	0	1.7419	1	6164	6164		19.36	1.0356	1				16772	11997	10340	10390	17037	17037					0.05132355165710578
HPVSASGP	8	Unmodified	_HPVSASGP_					0	0	0			REV__BCORL1|p.A1166Lfs*56|2|0.28|ENSG00000085185|chrX:130021034-130021034|G/-|frameshift_variant	REV__BCORL1|p.A1166Lfs*56|2|0.28|ENSG00000085185|chrX:130021034-130021034|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	376.1902160644531	2	376.190303	750.366053	0.034998	1.3166E-05	-0.28968	-0.00010897	-0.25468	-9.5809E-05	376.1901289690842	18.234	0.33278	18.234	18.096	18.428	0					26	13	3	0	0	0	0.67475	1	4482	4482		37.028	0	1	432450	+		16773	12283	10341	10391	17038	17038					-0.01911588404993836
HPVSEGTLMY	10	Unmodified	_HPVSEGTLMY_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2;CHPF2|p.N513Kfs*133|1|0.29|ENSG00000033100|chr7:151237898-151237899|-/A|frameshift_variant	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.2689819335938	2	567.268424	1132.5223	1.9399	0.0011005	-1.2986	-0.00073666	0.64132	0.0003638	567.2677868797975	33.661	0.39882	33.661	33.521	33.92	0					21	10	3	0	0	0	0.16018	1	12891	12891		84.916	40.799	1	826840			16774	1155	10342	10392	17039	17039					-0.038665110166903105
HPWAVAWPSL	10	Unmodified	_HPWAVAWPSL_					0	0	0			REV__ENST00000243776.10_1_2:220403755-220404097:-|nuORF	REV__ENST00000243776.10_1_2:220403755-220404097:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	582.305908203125	2	582.303458	1162.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.541	1	30.541	30.041	31.041	0								0	0	0	0.4201	1	9744	9744		23.042	2.0956	1		+		16775	17934	10343	10393	17040	17040					0.017571554340747753
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant;CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.7634887695312	2	556.763309	1111.51206	1.4219	0.00079168	-0.17266	-9.6129E-05	1.2493	0.00069555	556.7632587922699	22.026	0.22327	22.026	21.915	22.138	0					11	6	2	0	0	0	0.20551	1	6173	6173		60.972	15	1	112650			16776	388	10344	10394	17041	17041					-0.039230739512731816
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant;CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.7633666992188	2	556.763309	1111.51206	1.8078	0.0010065	-1.4933	-0.00083141	0.31448	0.00017509	556.7625874909444	22.359	0.45541	22.359	22.119	22.575	0					26	10	4	0	0	0	0.16806	1	7259	7259		65.465	24.687	1	806320			16777	388	10344	10394	17042	17042					-0.039230739512731816
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant;CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.7637939453125	2	556.763309	1111.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.188	1	22.188	21.688	22.688	0								0	0	0	0.045272	1	6566	6566		88.177	36.984	1				16778	388	10344	10394	17043	17043					-0.039230739512731816
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant;CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.7638549804688	2	556.763309	1111.51206	1.1904	0.0006628	-0.77906	-0.00043375	0.41139	0.00022905	556.7629900725887	22.248	0.46691	22.248	22.089	22.555	0					19	9	4	0	0	0	0.16806	1	7358	7358		65.465	24.893	1	685320			16779	388	10344	10394	17044	17044					-0.039230739512731816
HQAAIIIQK	9	Unmodified	_HQAAIIIQK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.3114318847656	2	511.311284	1020.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.823	1	21.823	21.323	22.323	0								0	0	0	0.0095889	1	6994	6994		110.12	47.141	1				16780	1390	10345	10395	17045	17045					0.09853441951133846
HQAAIIIQK	9	Unmodified	_HQAAIIIQK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.31109619140625	2	511.311284	1020.60801	0.40356	0.00020634	-0.67767	-0.0003465	-0.27411	-0.00014016	511.31089337797556	21.734	0.16752	21.734	21.625	21.793	0					6	3	2	0	0	0	0.055856	1	7263	7263		93.195	59.023	1	189370			16781	1390	10345	10395	17046	17046					0.09853441951133846
HQAPSSTSPF	10	Unmodified	_HQAPSSTSPF_					0	0	0			REV__ENSG00000229474|ENST00000682850|PATL2	REV__ENSG00000229474|ENST00000682850|PATL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7510986328125	2	529.748713	1057.48287	3.4454	0.0018252	1.2545	0.00066458	4.6999	0.0024898	529.7491811280087	42.694	0.5346	42.694	42.573	43.107	0					36	15	4	0	0	0	0.49411	1	17041	17041		45.972	1.8554	1	1137100	+		16782	17639	10346	10396	17047	17047					-0.04356894975921932
HQIMDLNL	8	Unmodified	_HQIMDLNL_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.25201416015625	2	492.252577	982.490601	-0.54783	-0.00026967	-0.24839	-0.00012227	-0.79622	-0.00039194	492.252626846723	27.352	0.46898	27.352	27.114	27.583	0					24	11	3	0	0	0	0.66372	1	9505	9505		38.806	1.647	1	162320			16783	7193	10347	10397	17048	17048					-0.0013445898000554735
HQKIKEELGVA	11	Unmodified	_HQKIKEELGVA_					0	0	0			REV__TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant	REV__TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.915283203125	3	417.906705	1250.69829	0.49428	0.00020656	-0.31027	-0.00012967	0.18401	7.6897E-05	417.9065031134231	22.398	0.19271	22.398	22.318	22.511	0					11	5	3	0	0	0	0.74306	1	6306	6306		21.032	0	1	567650	+		16784	13442	10348	10398	17049	17049					0.08296446488884612
HQLWRGQAL	9	Unmodified	_HQLWRGQAL_					0	0	0		ENST00000299164.3_1_11:130332473-130340845:+|nuORF	ENST00000299164.3_1_11:130332473-130340845:+|nuORF	ENST00000299164.3_1_11:130332473-130340845:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8040161132812	2	554.804157	1107.59376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.287	1	29.287	28.787	29.787	0								0	0	0	0.37821	1	10828	10828		17.365	1.7232	1				16785	8475	10349	10399	17050	17050					0.04426789522835861
HQNFESYKP	9	Unmodified	_HQNFESYKP_					0	0	0		TTC13|p.V488G|1|0.22|ENSG00000143643|chr1:230925642-230925642|A/C|missense_variant;TTC13|p.R627Nfs*8|1|0.19|ENSG00000143643|chr1:230921438-230921439|TC/-|frameshift_variant;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13	TTC13|p.V488G|1|0.22|ENSG00000143643|chr1:230925642-230925642|A/C|missense_variant	TTC13|p.V488G|1|0.22|ENSG00000143643|chr1:230925642-230925642|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.2701416015625	2	575.269813	1148.52507	-1.5348	-0.0008829	1.997	0.0011488	0.46228	0.00026593	575.2713772250089	21.666	0.16037	21.666	21.559	21.719	0					6	4	2	0	0	0	0.28897	1	6310	6310		51.193	0	1	47463			16786	4575	10350	10400	17051	17051					-0.0432491956753438
HQNSDSGMC	9	Unmodified	_HQNSDSGMC_					0	0	0		ENST00000423559.2_1_10:104377398-104377662:+|nuORF	ENST00000423559.2_1_10:104377398-104377662:+|nuORF	ENST00000423559.2_1_10:104377398-104377662:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.6752624511719	2	489.673834	977.333114	-0.71859	-0.00035188	2.0145	0.00098644	1.2959	0.00063456	489.6751323166898	11.46	0.19693	11.46	11.309	11.506	0					13	6	3	0	0	0	0.61124	1	2316	2316		6.7355	2.0538	1	355430			16787	9413	10351	10401	17052	17052					-0.15645906581664804
HQPRRQRR	8	Unmodified	_HQPRRQRR_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.3302001953125	2	567.329196	1132.64384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.669	1	52.669	52.169	53.169	0								0	0	0	1.7419	1	18650	18650		25.45	2.4077	1		+		16788	18181	10352	10402	17053	17053					0.08282336971365112
HQQKMEIY	8	Oxidation (M)	_HQQKM(Oxidation (M))EIY_		HQQKM(1)EIY		HQQKM(53)EIY	0	0	1			REV__MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant	REV__MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7617797851562	2	546.760766	1091.50698	1.1313	0.00061853	1.3059	0.00071401	2.4372	0.0013325	546.7620398132229	41.645	0.32623	41.645	41.46	41.786	0					20	17	2	0	0	0	0.5676	1	14660	14660		53.351	9.2347	1	77907	+		16789	14035	10353	10403	17054	17054		531			-0.03511377813879335
HQQLLRDKQG	10	Unmodified	_HQQLLRDKQG_					0	0	0			REV__ENST00000526500.5_1_11:111859671-111889757:+|nuORF	REV__ENST00000526500.5_1_11:111859671-111889757:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.8394775390625	2	611.836185	1221.65782	0.91642	0.0005607	1.5402	0.00094234	2.4566	0.001503	611.8370360948642	19.617	0.36595	19.617	19.511	19.877	0					13	7	2	0	0	0	0.59255	1	6247	6247		30.318	8.3578	1	583120	+		16790	15452	10354	10404	17055	17055					0.055855248891248266
HQRIFSTY	8	Unmodified	_HQRIFSTY_					0	0	0			REV__nc|ENSG00000124422|Q9UPT9-2|USP22	REV__nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2701416015625	2	526.269616	1050.52468	1.1996	0.00063131	-0.61134	-0.00032173	0.58826	0.00030958	526.2691083965054	38.157	0.13441	38.157	38.047	38.181	0					11	7	2	0	0	0	0.66372	1	13637	13637		38.806	3.1879	1	44972	+		16791	14396	10355	10405	17056	17056					0.0014370550329658727
HQSPVSSL	8	Unmodified	_HQSPVSSL_					0	0	0		nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3;ENST00000465224.5_1_2:97494197-97494470:+|nuORF;ARID5A-CNNM3|1|fusion	nc|ENSG00000168763|Q8NE01-2|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.72198486328125	2	427.721967	853.429381	0.24851	0.00010629	-0.29426	-0.00012586	-0.045749	-1.9568E-05	427.7218771778864	23.83	0.12925	23.83	23.751	23.88	0					9	5	2	0	0	0	0.37144	1	6947	6947		74.255	5.4682	1	58446			16792	6119	10356	10406	17057	17057					-0.0031964768775196717
HQTELNRM	8	Unmodified	_HQTELNRM_					0	0	0			REV__CEBPB|p.K293N|1|0.3|ENSG00000172216|chr20:50191912-50191912|G/T|missense_variant	REV__CEBPB|p.K293N|1|0.3|ENSG00000172216|chr20:50191912-50191912|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7506103515625	2	514.750733	1027.48691	0.023788	1.2245E-05	-0.13509	-6.954E-05	-0.11131	-5.7295E-05	514.7507200331679	11.289	0.074821	11.289	11.253	11.328	0					8	4	2	0	0	0	0.77246	1	2165	2165		24.203	3.2558	1	116100	+		16793	12411	10357	10407	17058	17058					-0.02573128753851961
HQTRRESR	8	Unmodified	_HQTRRESR_					0	0	0		nc|ENSG00000196220|O43295-3|SRGAP3;SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant;nc|ENSG00000196220|O43295-2|SRGAP3;ENSG00000196220|ENST00000383836|SRGAP3;ENST00000470951.5_1_3:9101821-9290635:-|nuORF	nc|ENSG00000196220|O43295-3|SRGAP3	nc|ENSG00000196220|O43295-3|SRGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2860107421875	2	535.28412	1068.55369	3.3668	0.0018022	-0.21211	-0.00011354	3.1546	0.0016886	535.2839616797021	12.086	0.57567	12.086	11.951	12.526	0					29	16	3	0	0	0	0.41	1	2475	2475		68.787	68.787	1	5324200			16794	7341	10358	10408	17059	17059					0.022152428522758782
HQVQGLVST	9	Unmodified	_HQVQGLVST_					0	0	0		ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	ENSG00000168453|ENST00000381418|HR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7602233886719	2	484.761623	967.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.389	1	46.389	45.889	46.889	0								0	0	0	0.29774	1	18564	18564		35.618	1.4457	1				16795	6094	10359	10409	17060	17060					0.023639992663902376
HQYVTKLY	8	Unmodified	_HQYVTKLY_					0	0	0			REV__CON__P02663	REV__CON__P02663	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2835693359375	2	526.282192	1050.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.869	1	41.869	41.369	42.369	0								0	0	0	1.7419	1	16457	16457		35.201	1.6851	1		+	+	16796	12586	10360	10410	17061	17061					0.026577603058512977
HRAFRPEQ	8	Unmodified	_HRAFRPEQ_					0	0	0			REV__ENSG00000189350|ENST00000379558|TOGARAM2	REV__ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7743530273438	2	520.772857	1039.53116	3.3786	0.0017595	-0.58459	-0.00030444	2.794	0.001455	520.7726336313359	35.562	0.31821	35.562	35.449	35.768	0					21	6	4	0	0	0	0.51384	1	13749	13749		58.782	5.8453	1	1829800	+		16797	17220	10361	10411	17062	17062					0.012976434546544624
HRAPGGQAL	9	Unmodified	_HRAPGGQAL_					0	0	0		ENST00000522293.5_1_5:179225047-179225996:-|nuORF	ENST00000522293.5_1_5:179225047-179225996:-|nuORF	ENST00000522293.5_1_5:179225047-179225996:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.74725341796875	2	453.74885	905.483148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.386	1	14.386	13.886	14.886	0								0	0	0	0.36266	1	3040	3040		21.96	1.013	1				16798	10326	10362	10412	17063	17063					0.02662569534618342
HRCEELQQ	8	Carbamidomethyl (C)	_HRC(Carbamidomethyl (C))EELQQ_	HRC(1)EELQQ		HRC(56)EELQQ		0	1	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2513427734375	2	550.251097	1098.48764	1.1542	0.00063508	-0.097373	-5.3579E-05	1.0568	0.0005815	550.2510239806359	15.308	0.11663	15.308	15.237	15.354	0					6	3	2	0	0	0	0.54629	1	3399	3399		55.504	6.0627	1	368190	+		16799	12733	10363	10413	17064	17064	501				-0.05766334104805537
HREKLVAR	8	Unmodified	_HREKLVAR_					0	0	0			REV__nc|ENSG00000167110|Q08379-2|GOLGA2	REV__nc|ENSG00000167110|Q08379-2|GOLGA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.8077392578125	2	504.8067	1007.59885	2.9333	0.0014807	-0.76091	-0.00038411	2.1724	0.0010966	504.80605495084416	23.56	0.51276	23.56	23.401	23.914	0					30	10	7	0	0	0	0.43813	1	7991	7991		66.429	15.094	1	6298100	+		16800	16168	10364	10414	17065	17065					0.09535093385466098
HREKPGTFY	9	Unmodified	_HREKPGTFY_					0	0	0		ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant;ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.7882690429688	2	567.788173	1133.56179	-1.2416	-0.00070499	1.3679	0.0007767	0.1263	7.1712E-05	567.7889379966471	11.66	0.092928	11.66	11.597	11.69	0					5	3	2	0	0	0	0.61124	1	2231	2231		12.207	0.69583	1	255740			16801	118	10365	10415	17066	17066					0.0003537704903919803
HRELTLNK	8	Unmodified	_HRELTLNK_					0	0	0			REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22	REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	337.5294494628906	3	337.529569	1009.56688	0.66285	0.00022373	-0.93268	-0.00031481	-0.26983	-9.1074E-05	337.529256282557	13.081	0.11637	13.081	13.046	13.162	0					7	3	3	0	0	0	0.59773	1	2906	2906		49.442	5.7908	1	498800	+		16802	16173	10366	10416	17067	17067					0.06247680911644693
HRENGLEY	8	Unmodified	_HRENGLEY_					0	0	0		JPH3|p.T482Pfs*127|1|0.4|ENSG00000154118|chr16:87689800-87689800|C/-|frameshift_variant;ENSG00000154118|ENST00000284262|JPH3	JPH3|p.T482Pfs*127|1|0.4|ENSG00000154118|chr16:87689800-87689800|C/-|frameshift_variant	JPH3|p.T482Pfs*127|1|0.4|ENSG00000154118|chr16:87689800-87689800|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.24005126953125	2	509.241055	1016.46756	-0.40335	-0.0002054	-1.737	-0.00088456	-2.1404	-0.00109	509.24026806857717	39.155	0.23872	39.155	39.067	39.306	0					13	8	2	0	0	0	0.49887	1	15396	15396		60.294	2.4827	1	61972			16803	5076	10367	10417	17068	17068					-0.04001761773099588
HRESHRPP	8	Unmodified	_HRESHRPP_					0	0	0		ENST00000526169.1_1_11:67376170-67379399:+|nuORF	ENST00000526169.1_1_11:67376170-67379399:+|nuORF	ENST00000526169.1_1_11:67376170-67379399:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2619323730469	2	508.262656	1014.51076	1.3127	0.00066718	-3.3611	-0.0017083	-2.0484	-0.0010411	508.26116462130005	35.729	0.16462	35.729	35.62	35.784	0					7	3	3	0	0	0	0.67836	1	13833	13833		42.396	8.2236	1	361510			16804	10373	10368	10418	17069	17069					0.004084727948452382
HRGGWSAVL	9	Unmodified	_HRGGWSAVL_					0	0	0			REV__ENST00000270357.9_2_2:241517773-241518097:+|nuORF	REV__ENST00000270357.9_2_2:241517773-241518097:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.76385498046875	2	491.764501	981.514448	-0.057111	-2.8085E-05	0.38143	0.00018757	0.32432	0.00015949	491.7652319438712	35.509	0.30018	35.509	35.351	35.651	0					15	11	2	0	0	0	0.41113	1	12667	12667		40.778	5.5774	1	94261	+		16805	18097	10369	10419	17070	17070					0.022951425686983384
HRHFVKAL	8	Unmodified	_HRHFVKAL_					0	0	0		ENST00000427137.1_1_7:46039264-46039813:-|nuORF	ENST00000427137.1_1_7:46039264-46039813:-|nuORF	ENST00000427137.1_1_7:46039264-46039813:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5341491699219	3	336.534766	1006.58247	-1.9124	-0.00064357	0.28848	9.7085E-05	-1.6239	-0.00054649	336.5349134285313	30.327	1.5806	30.327	29.489	31.07	0					64	41	2	0	0	0	0.78216	1	10042	10042		6.7355	6.7355	1	162500			16806	9453	10370	10420	17071	17071					0.07944012219365959
HRHFVKAL	8	Unmodified	_HRHFVKAL_					0	0	0		ENST00000427137.1_1_7:46039264-46039813:-|nuORF	ENST00000427137.1_1_7:46039264-46039813:-|nuORF	ENST00000427137.1_1_7:46039264-46039813:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2982482910156	2	504.29851	1006.58247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.873	1	41.873	41.373	42.373	0								0	0	0	1.7419	1	16680	16680		35.201	3.2459	1				16807	9453	10370	10420	17072	17072					0.07944012219365959
HRLFGHKL	8	Unmodified	_HRLFGHKL_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5343017578125	3	336.534766	1006.58247	-1.9124	-0.00064358	0.68705	0.00023122	-1.2253	-0.00041236	336.5349965732134	39.245	0.49473	39.245	38.978	39.473	0					34	26	2	0	0	0	0.7914	1	13934	13934		11.511	11.511	1	69273	+		16808	13854	10371	10421	17073	17073					0.07944012219365959
HRLLGSSQSFS	11	Unmodified	_HRLLGSSQSFS_					0	0	0			REV__ENSG00000183647|ENST00000597700|ZNF530	REV__ENSG00000183647|ENST00000597700|ZNF530	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.8790283203125	3	406.879038	1217.61528	1.1465	0.00046647	-1.3219	-0.00053786	-0.17546	-7.1391E-05	406.87853860174323	15.777	0.41143	15.777	15.669	16.08	0					14	8	2	0	0	0	0.67366	1	4397	4397		30.139	0	1	1395000	+		16809	16945	10372	10422	17074	17074					0.015181297608933164
HRLWMQEENND	11	Unmodified	_HRLWMQEENND_					0	0	0		KIAA0753|p.P804H|1|0.32|ENSG00000198920|chr17:6595001-6595001|G/T|missense_variant	KIAA0753|p.P804H|1|0.32|ENSG00000198920|chr17:6595001-6595001|G/T|missense_variant	KIAA0753|p.P804H|1|0.32|ENSG00000198920|chr17:6595001-6595001|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	736.3240966796875	2	736.322782	1470.63101	2.2038	0.0016227	-0.54157	-0.00039877	1.6622	0.0012239	736.3224802211347	19.071	0.26582	19.071	18.963	19.229	0					15	5	4	0	0	0	0.69983	1	5839	5839		24.519	0	1	1877600			16810	11251	10373	10423	17075	17075					-0.08547951784316865
HRLWSMAL	8	Unmodified	_HRLWSMAL_					0	0	0			REV__ENST00000337540.11_1_10:99520017-99520263:+|nuORF	REV__ENST00000337540.11_1_10:99520017-99520263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2727355957031	2	507.271104	1012.52766	1.1119	0.00056404	1.5119	0.00076694	2.6238	0.001331	507.2718531408053	28.666	0.46429	28.666	28.365	28.829	0					21	9	3	0	0	0	0.51384	1	10522	10522		47.916	0	1	1427800	+		16811	18421	10374	10424	17076	17076					0.02189257356451435
HRQASRGA	8	Unmodified	_HRQASRGA_					0	0	0			REV__ENST00000566525.5_1_16:770887-771532:+|nuORF	REV__ENST00000566525.5_1_16:770887-771532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.7376708984375	2	441.736274	881.457996	3.1287	0.0013821	-0.3233	-0.00014281	2.8054	0.0012393	441.73618119777035	20.378	0.72456	20.378	19.849	20.573	0					30	23	2	0	0	0	0.74405	1	5759	5759		27.882	27.882	1	115400	+		16812	20345	10375	10425	17077	17077					0.012525147320388896
HRQDALWI	8	Unmodified	_HRQDALWI_					0	0	0		nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7780151367188	2	519.777608	1037.54066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.731	1	34.731	34.231	35.231	0								0	0	0	1.7419	1	11369	11369		30.504	0.6621	1				16813	3993	10376	10426	17078	17078					0.023394117401721815
HRRVGAAQL	9	Unmodified	_HRRVGAAQL_					0	0	0		ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5349426269531	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.861	1	28.861	28.361	29.361	0								0	0	0	0.32356	1	10505	10505		30.318	0	1				16814	11015	10377	10427	17079	17079					0.0754192272564751
HRSYDEWL	8	Unmodified	_HRSYDEWL_					0	0	0			REV__nc|ENSG00000206190|O60312-2|ATP10A	REV__nc|ENSG00000206190|O60312-2|ATP10A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.259033203125	2	553.256705	1104.49886	1.3179	0.00072914	2.3297	0.0012889	3.6476	0.0020181	553.2579018115388	18.565	0.28941	18.565	18.465	18.755	0					19	10	3	0	0	0	0.72381	1	4642	4642		30.504	0	1	839020	+		16815	12248	10378	10428	17080	17080					-0.04921188739012905
HRTSKCHNT	9	Unmodified	_HRTSKCHNT_					0	0	0			REV__ENST00000460310.1_1_2:71658536-71660440:+|nuORF	REV__ENST00000460310.1_1_2:71658536-71660440:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2614135742188	2	542.259256	1082.50396	1.7984	0.0009752	1.1705	0.00063472	2.9689	0.0016099	542.2599886909201	25.305	0.29545	25.305	25.186	25.481	0					31	10	5	0	0	0	0.33044	1	7576	7576		47.657	8.8512	1	1713500	+		16816	13229	10379	10429	17081	17081					-0.03399208148039179
HRVCMFLIY	9	Unmodified	_HRVCMFLIY_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.3024291992188	2	591.301547	1180.58854	-0.5079	-0.00030032	1.7264	0.0010208	1.2185	0.00072049	591.302151760898	39.782	0.17587	39.782	39.677	39.853	0					13	10	2	0	0	0	0.36711	1	13352	13352		44.531	10.359	1	67465	+		16817	17341	10380	10430	17082	17082					0.00547026344383994
HRYWWCGYYRY	11	Unmodified	_HRYWWCGYYRY_					0	0	0		ENST00000602591.1_1_6:30256646-30256907:-|nuORF	ENST00000602591.1_1_6:30256646-30256907:-|nuORF	ENST00000602591.1_1_6:30256646-30256907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.5817260742188	3	551.578705	1651.71429	1.7469	0.00096355	0.19648	0.00010837	1.9434	0.0010719	551.5804994905985	19.592	0.15581	19.592	19.492	19.647	0					5	3	2	0	0	0	0.90296	1	5953	5953		0.37141	0	1	124150			16818	11048	10381	10431	17083	17083					-0.08550170545845504
HSAPVGAQL	9	Unmodified	_HSAPVGAQL_					0	0	0		nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;MST1R|p.S761Pfs*11|1|0.43|ENSG00000164078|chr3:49896794-49896800|ACCAGGT/-|frameshift_variant;MST1R|p.G755Vfs*19|3|0.19|ENSG00000164078|chr3:49896810-49896810|C/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.2376708984375	2	440.237784	878.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.75	1	24.75	24.25	25.25	0								0	0	0	0.29774	1	7352	7352		35.618	6.4687	1				16819	5650	10382	10432	17084	17084					0.016923450661806783
HSAPVGAQL	9	Unmodified	_HSAPVGAQL_					0	0	0		nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;MST1R|p.S761Pfs*11|1|0.43|ENSG00000164078|chr3:49896794-49896800|ACCAGGT/-|frameshift_variant;MST1R|p.G755Vfs*19|3|0.19|ENSG00000164078|chr3:49896810-49896810|C/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.2373962402344	2	440.237784	878.461016	0.56019	0.00024662	-0.37737	-0.00016613	0.18282	8.0483E-05	440.2372590873707	25.022	0.30659	25.022	24.902	25.209	0					15	7	3	0	0	0	0.19605	1	8494	8494		62.107	4.2961	1	356480			16820	5650	10382	10432	17085	17085					0.016923450661806783
HSAPVGAQL	9	Unmodified	_HSAPVGAQL_					0	0	0		nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;MST1R|p.S761Pfs*11|1|0.43|ENSG00000164078|chr3:49896794-49896800|ACCAGGT/-|frameshift_variant;MST1R|p.G755Vfs*19|3|0.19|ENSG00000164078|chr3:49896810-49896810|C/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.2375183105469	2	440.237784	878.461016	-0.33511	-0.00014753	0.87154	0.00038368	0.53643	0.00023616	440.2376935880615	24.965	0.36523	24.965	24.857	25.222	0					12	7	3	0	0	0	0.22377	1	8789	8789		58.782	3.2778	1	236440			16821	5650	10382	10432	17086	17086					0.016923450661806783
HSATTIGNK	9	Unmodified	_HSATTIGNK_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;HCFC1|p.P367Qfs*16|1|0.4|ENSG00000172534|chrX:153960146-153960146|G/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7458190917969	2	464.745973	927.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.896	1	13.896	13.396	14.396	0								0	0	0	0.13425	1	3268	3268		63.534	22.756	1				16822	6369	10383	10433	17087	17087					0.010754262322734576
HSCPESVKK	9	Carbamidomethyl (C)	_HSC(Carbamidomethyl (C))PESVKK_	HSC(1)PESVKK		HSC(41)PESVKK		0	1	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;NT5DC1|p.F379Lfs*74|1|0.1|ENSG00000178425|chr6:116239002-116239002|T/-|frameshift_variant;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.84661865234375	3	357.846569	1070.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.786	1	12.786	12.286	13.286	0								0	0	0	0.26578	1	2764	2764		41.427	14.379	1				16823	6715	10384	10434	17088	17088	287				-0.014559754396032076
HSCPESVKK	9	Carbamidomethyl (C)	_HSC(Carbamidomethyl (C))PESVKK_	HSC(1)PESVKK		HSC(67)PESVKK		0	1	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;NT5DC1|p.F379Lfs*74|1|0.1|ENSG00000178425|chr6:116239002-116239002|T/-|frameshift_variant;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.267578125	2	536.266216	1070.51788	-0.48951	-0.00026251	1.3825	0.0007414	0.89302	0.00047889	536.2674372808646	12.51	0.059096	12.51	12.457	12.517	0					5	3	2	0	0	0	0.15163	1	2477	2477		67.494	11.989	1	75055			16824	6715	10384	10434	17089	17089	287				-0.014559754396032076
HSCPESVKK	9	Carbamidomethyl (C)	_HSC(Carbamidomethyl (C))PESVKK_	HSC(1)PESVKK		HSC(80)PESVKK		0	1	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;NT5DC1|p.F379Lfs*74|1|0.1|ENSG00000178425|chr6:116239002-116239002|T/-|frameshift_variant;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2669067382812	2	536.266216	1070.51788	1.8393	0.00098637	-0.99342	-0.00053274	0.84591	0.00045363	536.2659858501421	12.761	0.18331	12.761	12.671	12.854	0					9	4	3	0	0	0	0.098791	1	2963	2963		79.713	24.936	1	745570			16825	6715	10384	10434	17090	17090	287				-0.014559754396032076
HSCPESVKK	9	Carbamidomethyl (C)	_HSC(Carbamidomethyl (C))PESVKK_	HSC(1)PESVKK		HSC(110)PESVKK		0	1	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;NT5DC1|p.F379Lfs*74|1|0.1|ENSG00000178425|chr6:116239002-116239002|T/-|frameshift_variant;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2666625976562	2	536.266216	1070.51788	1.92	0.0010296	-0.91773	-0.00049215	1.0023	0.0005375	536.2657259737122	12.732	0.14982	12.732	12.688	12.838	0					5	3	2	0	0	0	0.025517	1	2792	2792		113.41	42.116	1	700090			16826	6715	10384	10434	17091	17091	287				-0.014559754396032076
HSDAVVAL	8	Unmodified	_HSDAVVAL_					0	0	0			REV__ZMAT4|p.S86L|1|0.27|ENSG00000165061|chr8:40697337-40697337|G/A|missense_variant	REV__ZMAT4|p.S86L|1|0.27|ENSG00000165061|chr8:40697337-40697337|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.716552734375	2	406.21906	810.423567	-0.10523	-4.2746E-05	-1.0722	-0.00043553	-1.1774	-0.00047828	406.2189370990977	24.087	0.43995	24.087	23.794	24.234	0					23	10	3	0	0	0	0.78146	1	7374	7374		23.037	1.3344	1	982090	+		16827	22310	10385	10435	17092	17092					0.0107725380055399
HSDHEFLMHYC	11	Unmodified	_HSDHEFLMHYC_					0	0	0		ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	709.7854614257812	2	709.784447	1417.55434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.01	1	17.01	16.51	17.51	0								0	0	0	0.41312	1	4976	4976		34.173	10.65	1				16828	5215	10386	10436	17093	17093					-0.137734666051756
HSEDEIEY	8	Unmodified	_HSEDEIEY_					0	0	0		ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3;ENST00000380987.2_1_13:28578191-28599431:-|nuORF	ENSG00000122025|ENST00000241453|FLT3	ENSG00000122025|ENST00000241453|FLT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2093200683594	2	511.209086	1020.40362	1.2223	0.00062484	-0.78375	-0.00040066	0.43852	0.00022418	511.20889531824565	40.806	0.37403	40.806	40.711	41.085	0					23	11	4	0	0	0	0.65276	1	16074	16074		40.573	1.7665	1	548190			16829	3247	10387	10437	17094	17094					-0.1057658672071966
HSFIDFSH	8	Unmodified	_HSFIDFSH_					0	0	0			REV__ALDH3A2|p.T418I|1|0.28|ENSG00000072210|chr17:19671766-19671766|C/T|missense_variant	REV__ALDH3A2|p.T418I|1|0.28|ENSG00000072210|chr17:19671766-19671766|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2259216308594	2	495.227417	988.44028	0.74374	0.00036832	-3.1184	-0.0015443	-2.3747	-0.001176	495.22573546568395	16.581	0.18201	16.581	16.492	16.674	0					10	4	3	0	0	0	0.66372	1	4537	4537		38.806	5.2906	1	400080	+		16830	12136	10388	10438	17095	17095					-0.05440245313468495
HSGPVIPVY	9	Unmodified	_HSGPVIPVY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7637939453125	2	484.763635	967.512717	-0.0016108	-7.8088E-07	-0.079263	-3.8424E-05	-0.080874	-3.9205E-05	484.76352708612376	36.16	0.47159	36.16	36.04	36.512	0					49	23	4	0	0	0	0.32741	1	11845	11845		47.916	9.1095	1	612340			16831	2841	10389	10439	17096	17096					0.027660887600859496
HSGPVIPVY	9	Unmodified	_HSGPVIPVY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.76348876953125	2	484.763635	967.512717	-1.235	-0.00059868	0.90252	0.00043751	-0.33246	-0.00016117	484.7640026223123	36.235	0.37357	36.235	36.102	36.476	0					34	18	3	0	0	0	0.13483	1	12269	12269		71.378	21.353	1	512660			16832	2841	10389	10439	17097	17097					0.027660887600859496
HSGPVIPVY	9	Unmodified	_HSGPVIPVY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.76318359375	2	484.763635	967.512717	-0.093146	-4.5154E-05	-0.36948	-0.00017911	-0.46262	-0.00022426	484.7633802890222	36.431	0.33978	36.431	36.324	36.663	0					17	9	3	0	0	0	0.30268	1	14167	14167		50.025	11.218	1	269790			16833	2841	10389	10439	17098	17098					0.027660887600859496
HSGPVIPVY	9	Unmodified	_HSGPVIPVY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7632751464844	2	484.763635	967.512717	0.66127	0.00032056	-0.99478	-0.00048224	-0.33352	-0.00016168	484.763102307643	36.425	0.49384	36.425	36.316	36.809	0					31	14	3	0	0	0	0.037966	1	14188	14188		101.21	10.435	1	2886200			16834	2841	10389	10439	17099	17099					0.027660887600859496
HSGPVIPVY	9	Unmodified	_HSGPVIPVY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7639465332031	2	484.763635	967.512717	0.30226	0.00014652	0.013944	6.7594E-06	0.3162	0.00015328	484.76358339271206	36.23	0.26896	36.23	36.114	36.383	0					25	10	3	0	0	0	0.32741	1	12929	12929		47.916	1.9636	1	544160			16835	2841	10389	10439	17100	17100					0.027660887600859496
HSGPVIPVY	9	Unmodified	_HSGPVIPVY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7638854980469	2	484.763635	967.512717	-0.25636	-0.00012427	0.039375	1.9088E-05	-0.21698	-0.00010518	484.76364138299226	36.225	0.36536	36.225	36.103	36.469	0					34	14	3	0	0	0	0.23186	1	12937	12937		57.811	11.859	1	796570			16836	2841	10389	10439	17101	17101					0.027660887600859496
HSGPVIPVY	9	Unmodified	_HSGPVIPVY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.76361083984375	2	484.763635	967.512717	-0.57567	-0.00027906	-0.00047726	-2.3136E-07	-0.57615	-0.00027929	484.7635238251439	36.388	0.76104	36.388	36.233	36.994	0					46	15	4	0	0	0	0.077948	2	14099	14099;14268		85.359	44.787	1	5727000			16837	2841	10389	10439	17102;17103	17102					0.027660887600859496
HSGTIITQK	9	Unmodified	_HSGTIITQK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7768249511719	2	492.777274	983.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.148	1	17.148	16.648	17.648	0								0	0	0	0.04624	1	5041	5041		87.696	32.92	1				16838	1705	10390	10440	17104	17104					0.04756572300482276
HSGTIITQK	9	Unmodified	_HSGTIITQK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.776611328125	2	492.777274	983.539994	-0.59767	-0.00029452	-0.9494	-0.00046784	-1.5471	-0.00076236	492.77658086707436	17.098	0.11936	17.098	17.039	17.158	0					4	2	2	0	0	0	0.10915	1	4885	4885		77.318	29.66	1	240580			16839	1705	10390	10440	17105	17105					0.04756572300482276
HSHKHLIEL	9	Unmodified	_HSHKHLIEL_					0	0	0		CUX2|p.I207Nfs*32|1|0.38|ENSG00000111249|chr12:111295387-111295388|-/A|frameshift_variant;CUX2|p.L655Sfs*49|1|0.38|ENSG00000111249|chr12:111312159-111312160|-/T|frameshift_variant;CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant;CUX2|p.P1429Lfs*23|1|0.33|ENSG00000111249|chr12:111348144-111348144|C/-|frameshift_variant;ENSG00000111249|ENST00000261726|CUX2	CUX2|p.I207Nfs*32|1|0.38|ENSG00000111249|chr12:111295387-111295388|-/A|frameshift_variant	CUX2|p.I207Nfs*32|1|0.38|ENSG00000111249|chr12:111295387-111295388|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3132934570312	2	557.311815	1112.60908	3.4947	0.0019476	-0.64292	-0.0003583	2.8517	0.0015893	557.3111660964403	42.604	0.19804	42.604	42.501	42.699	0					11	5	3	0	0	0	0.062676	1	17005	17005		90.777	14.003	1	240370			16840	721	10391	10441	17106	17106					0.057276563200503006
HSHKNNLFET	10	Unmodified	_HSHKNNLFET_					0	0	0		MFGE8|p.K355N|1|0.04|ENSG00000140545|chr15:88899494-88899494|C/A|missense_variant	MFGE8|p.K355N|1|0.04|ENSG00000140545|chr15:88899494-88899494|C/A|missense_variant	MFGE8|p.K355N|1|0.04|ENSG00000140545|chr15:88899494-88899494|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	613.796630859375	2	613.799269	1225.58398	0.0013822	8.4839E-07	-2.5534	-0.0015673	-2.552	-0.0015664	613.7975941263887	35.72	0.38276	35.72	35.531	35.914	0					14	10	2	0	0	0	0.64162	1	13393	13393		29.17	4.6509	1	52441			16841	11365	10392	10442	17107	17107					-0.019784432731967172
HSHLLAPTL	9	Unmodified	_HSHLLAPTL_					0	0	0			REV__RAVER1|p.R221H|1|0.3|ENSG00000161847|chr19:10328736-10328736|C/T|missense_variant	REV__RAVER1|p.R221H|1|0.3|ENSG00000161847|chr19:10328736-10328736|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.19097900390625	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.81	1	46.81	46.31	47.31	0								0	0	0	0.37233	1	17247	17247		19.104	0.84144	1		+		16842	21446	10393	10443	17108	17108					0.05589180025708629
HSHQAQHTD	9	Unmodified	_HSHQAQHTD_					0	0	0			REV__ENST00000525598.1_1_11:118984241-118984860:+|nuORF	REV__ENST00000525598.1_1_11:118984241-118984860:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7318115234375	2	530.731386	1059.44822	0.36238	0.00019233	-0.49312	-0.00026172	-0.13074	-6.939E-05	530.7309998234621	18.884	0.15087	18.884	18.814	18.965	0					9	4	3	0	0	0	0.5879	1	5029	5029		23.042	2.0956	1	110100	+		16843	19989	10394	10444	17109	17109					-0.07912718064017099
HSIDGRVVEPK	11	Unmodified	_HSIDGRVVEPK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.8945617675781	3	412.894688	1235.66223	0.059871	2.4721E-05	-0.50543	-0.00020869	-0.44556	-0.00018397	412.8944526589796	19.885	0.37018	19.885	19.726	20.096	0					13	7	2	0	0	0	0.3077	1	6375	6375		61.765	8.1677	1	443710			16844	3273	10395	10445	17110	17110					0.05382989312033715
HSIIQGDR	8	Unmodified	_HSIIQGDR_					0	0	0			REV__DCDC1|p.N526Mfs*10|1|0.2|ENSG00000170959|chr11:30905013-30905013|T/-|frameshift_variant	REV__DCDC1|p.N526Mfs*10|1|0.2|ENSG00000170959|chr11:30905013-30905013|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2461242675781	2	463.246141	924.477728	-0.14433	-6.6862E-05	-0.081591	-3.7797E-05	-0.22592	-0.00010466	463.2460814454669	17.326	0.19852	17.326	17.268	17.466	0					6	4	2	0	0	0	0.53424	1	5139	5139		56.721	1.2168	1	314470	+		16845	12674	10396	10446	17111	17111					0.012468459521414843
HSISPQQI	8	Unmodified	_HSISPQQI_					0	0	0			REV__TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant	REV__TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.24310302734375	2	455.243067	908.47158	0.62438	0.00028424	-0.24683	-0.00011237	0.37755	0.00017188	455.24277123393614	15.158	0.097128	15.158	15.098	15.195	0					6	3	2	0	0	0	0.76187	1	3246	3246		25.574	1.3713	1	43229	+		16846	14344	10397	10447	17112	17112					0.013683277206155253
HSIVRRRY	8	Unmodified	_HSIVRRRY_					0	0	0		ENSG00000149929|ENST00000279392|HIRIP3;ENST00000568880.2_1_16:30006612-30006935:-|nuORF;ENST00000565996.1_1_16:30006421-30006926:-|nuORF;nc|ENSG00000149929|Q9BW71-3|HIRIP3;ENST00000563053.1_1_16:30005092-30006861:-|nuORF;nc|ENSG00000149929|Q9BW71-2|HIRIP3	ENSG00000149929|ENST00000279392|HIRIP3	ENSG00000149929|ENST00000279392|HIRIP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8187866210938	2	543.817599	1085.62064	1.8774	0.001021	1.7417	0.00094719	3.6192	0.0019682	543.8184649883704	32.695	0.57363	32.695	32.342	32.915	0					24	14	2	0	0	0	0.69548	1	12013	12013		24.203	0	1	106130			16847	4913	10398	10448	17113	17113					0.08125898134039744
HSLAPGSVAK	10	Unmodified	_HSLAPGSVAK_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.8504333496094	3	322.85042	965.529429	0.0088208	2.8478E-06	-0.19347	-6.2461E-05	-0.18465	-5.9613E-05	322.8503482122207	14.163	0.21275	14.163	14.01	14.222	0					7	4	2	0	0	0	0.71467	1	3447	3447		20.03	0.92695	1	183890			16848	3854;10156	10399	10449	17114	17114					0.04528589646054115
HSLEDQSY	8	Unmodified	_HSLEDQSY_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7114562988281	2	489.711796	977.40904	0.77167	0.0003779	-1.0289	-0.00050388	-0.25725	-0.00012598	489.7111898537062	21.429	0.46818	21.429	21.321	21.789	0					23	9	3	0	0	0	0.46905	1	6990	6990		63.306	2.3343	1	655180	+		16849	21270	10400	10450	17115	17115					-0.08056863138233439
HSLHLKDIL	9	Unmodified	_HSLHLKDIL_					0	0	0		ENST00000325222.8_1_7:148396099-148427112:+|nuORF;ENST00000409469.5_1_7:148395333-148427112:+|nuORF	ENST00000325222.8_1_7:148396099-148427112:+|nuORF	ENST00000325222.8_1_7:148396099-148427112:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3170776367188	2	538.316566	1074.61858	0.69307	0.00037309	0.54571	0.00029377	1.2388	0.00066686	538.3167174403369	25.573	0.16997	25.573	25.514	25.684	0					8	3	3	0	0	0	0.49718	1	8984	8984		25.574	0	1	508810			16850	8643	10401	10451	17116	17116					0.0842542460554796
HSLLLAAGDW	10	Unmodified	_HSLLLAAGDW_					0	0	0			REV__TAF6L|p.R264W|1|0.49|ENSG00000162227|chr11:62782296-62782296|C/T|missense_variant	REV__TAF6L|p.R264W|1|0.49|ENSG00000162227|chr11:62782296-62782296|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.785400390625	2	541.785099	1081.55564	0.30018	0.00016263	0.58443	0.00031663	0.8846	0.00047926	541.7853981280805	38.974	1.0827	38.974	38.836	39.919	0					73	40	4	0	0	0	0.66185	1	15008	15008		26.693	0	1	2616600	+		16851	21619	10402	10452	17117	17117					0.01812858817538654
HSLSPGPSK	9	Unmodified	_HSLSPGPSK_					0	0	0		ENST00000479509.1_1_6:37140348-37141864:+|nuORF;ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1	ENST00000479509.1_1_6:37140348-37141864:+|nuORF	ENST00000479509.1_1_6:37140348-37141864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2432861328125	2	455.243067	908.47158	0.26371	0.00012005	0.23466	0.00010683	0.49837	0.00022688	455.2431761108199	15.447	0.13984	15.447	15.38	15.52	0					7	3	3	0	0	0	0.25761	1	4011	4011		54.722	10.191	1	175350			16852	4148	10403	10453	17118	17118					0.013683277206155253
HSLTPLSSAI	10	Unmodified	_HSLTPLSSAI_					0	0	0			REV__ENST00000451737.1_1_10:96990486-96990897:-|nuORF	REV__ENST00000451737.1_1_10:96990486-96990897:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2838745117188	2	513.284931	1024.55531	-0.016786	-8.6158E-06	-0.23328	-0.00011974	-0.25007	-0.00012836	513.2844845275912	32.561	0.095985	32.561	32.508	32.604	0					6	4	2	0	0	0	0.7005	1	10533	10533		21.96	2.8564	1	37627	+		16853	19311	10404	10454	17119	17119					0.044014390976599316
HSMDMKFTY	9	Unmodified	_HSMDMKFTY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.75146484375	2	580.249177	1158.4838	1.3957	0.00080986	-1.4508	-0.00084183	-0.055097	-3.197E-05	580.7505046001235	34.235	0.23988	34.235	34.143	34.383	0					13	6	3	0	0	0	0.12834	1	12741	12741		72.879	26.907	1	147190			16854	2953	10405	10455	17120	17120					-0.08910139922841154
HSMDMKFTY	9	Unmodified	_HSMDMKFTY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.2498779296875	2	580.249177	1158.4838	1.0998	0.00063814	-0.4533	-0.00026303	0.64647	0.00037512	580.2492956764711	34.233	0.25301	34.233	34.146	34.399	0					12	6	3	0	0	0	0.026538	1	13190	13190		112.41	70.015	1	131220			16855	2953	10405	10455	17121	17121					-0.08910139922841154
HSMDMKFTY	9	Unmodified	_HSMDMKFTY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.2496948242188	2	580.249177	1158.4838	0.13235	7.6793E-05	-0.34999	-0.00020308	-0.21764	-0.00012629	580.2492865697529	34.204	0.30723	34.204	34.101	34.409	0					18	6	4	0	0	0	0.0030642	1	13073	13073		168.26	94.003	1	369330			16856	2953	10405	10455	17122	17122					-0.08910139922841154
HSNNPAHKY	9	Unmodified	_HSNNPAHKY_					0	0	0		TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.255859375	2	534.254497	1066.49444	2.272	0.0012138	0.058014	3.0994E-05	2.33	0.0012448	534.2542955883348	38.012	0.19505	38.012	37.882	38.077	0					10	9	2	0	0	0	0.41113	1	14432	14432		40.778	5.5774	1	92708			16857	22521	10406	10456	17123	17123					-0.03614653161912429
HSPEWYSKGF	10	Unmodified	_HSPEWYSKGF_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.2888793945312	2	619.285463	1236.55637	3.0817	0.0019085	2.0263	0.0012548	5.108	0.0031633	619.2870775807959	32.743	0.45652	32.743	32.59	33.046	0					29	9	4	0	0	0	0.39566	1	12383	12383		56.721	5.3856	1	1135800			16858	3842	10407	10457	17124	17124					-0.052443465334590655
HSPGAVSSL	9	Unmodified	_HSPGAVSSL_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-3|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.7217712402344	2	427.721967	853.429381	0.86016	0.00036791	-1.4122	-0.00060403	-0.55204	-0.00023612	427.72131381940915	24.166	0.22546	24.166	24.052	24.277	0					8	5	2	0	0	0	0.062676	1	8098	8098		90.777	5.8611	1	312540			16859	5522	10408	10458	17125	17125					-0.0031964768775196717
HSPGAVSSL	9	Unmodified	_HSPGAVSSL_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-3|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.7215881347656	2	427.721967	853.429381	-0.16683	-7.1356E-05	0.012498	5.3455E-06	-0.15433	-6.601E-05	427.72192783131356	23.891	0.17528	23.891	23.794	23.969	0					6	4	2	0	0	0	0.37197	1	7376	7376		44.117	1.7207	1	71208			16860	5522	10408	10458	17126	17126					-0.0031964768775196717
HSPVRPVW	8	Unmodified	_HSPVRPVW_					0	0	0		ENST00000394691.6_2_14:65210564-65210660:+|nuORF	ENST00000394691.6_2_14:65210564-65210660:+|nuORF	ENST00000394691.6_2_14:65210564-65210660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2680969238281	2	489.269419	976.524284	-0.075107	-3.6748E-05	-2.0726	-0.0010141	-2.1478	-0.0010508	489.2684083061233	33.254	0.26696	33.254	33.151	33.418	0					10	6	2	0	0	0	0.64096	1	12719	12719		42.474	1.6963	1	55756			16861	9180	10409	10459	17127	17127					0.03508330574084084
HSQLAEPQDLP	11	Unmodified	_HSQLAEPQDLP_					0	0	0		TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant;nc|ENSG00000121075|P57082|TBX4;ENSG00000121075|ENST00000644296|TBX4	TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant	TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	617.8087768554688	2	617.806759	1233.59897	0.17229	0.00010644	2.3455	0.0014491	2.5178	0.0015555	617.8085006529686	27.465	0.51596	27.465	27.366	27.882	0					30	16	3	0	0	0	0.78498	1	8456	8456		18.262	2.2553	1	173080			16862	3212	10410	10460	17128	17128					-0.008489961958730419
HSQLKEHPV	9	Unmodified	_HSQLKEHPV_					0	0	0			REV__ENSG00000198723|ENST00000361664|TEX45	REV__ENSG00000198723|ENST00000361664|TEX45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7885131835938	2	537.788173	1073.56179	1.9948	0.0010728	-1.492	-0.00080238	0.50286	0.00027043	537.7873118837853	26.85	0.4653	26.85	26.739	27.204	0					18	9	4	0	0	0	0.17854	1	9547	9547		64.207	4.089	1	2814800	+		16863	17421	10411	10461	17129	17129					0.027953770490285024
HSRCLRPG	8	Unmodified	_HSRCLRPG_					0	0	0		ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2467956542969	2	463.242878	924.471203	4.1481	0.0019216	1.798	0.00083291	5.9461	0.0027545	463.2440817949405	17.113	0.098814	17.113	17.061	17.16	0					5	3	2	0	0	0	0.65276	1	4238	4238		40.573	7.057	1	32450			16864	9887	10412	10462	17130	17130					0.005946295197759355
HSRDNFPY	8	Unmodified	_HSRDNFPY_					0	0	0			REV__TMEM161B|p.L243Ffs*90|1|0.27|ENSG00000164180|chr5:88205885-88205886|-/A|frameshift_variant	REV__TMEM161B|p.L243Ffs*90|1|0.27|ENSG00000164180|chr5:88205885-88205886|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2350463867188	2	518.235773	1034.45699	-0.39217	-0.00020323	-1.3798	-0.00071505	-1.772	-0.00091829	518.2350729093138	11.607	0.15461	11.607	11.495	11.65	0					10	4	3	0	0	0	0.7887	1	2407	2407		12.959	0.75233	1	582080	+		16865	21652	10413	10463	17131	17131					-0.058857444275190574
HSRNEGTATY	10	Unmodified	_HSRNEGTATY_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP|p.A645T|1|0.28|ENSG00000173801|chr17:41757528-41757528|C/T|missense_variant	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.2603149414062	2	568.259976	1134.5054	0.69015	0.00039219	1.4318	0.00081361	2.1219	0.0012058	568.260680412464	15.527	0.10583	15.527	15.44	15.546	0					5	3	2	0	0	0	0.22691	1	3491	3491		76.17	42.248	1	64931			16866	6450	10414	10464	17132	17132					-0.0564729557827377
HSRNEGTATY	10	Unmodified	_HSRNEGTATY_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP|p.A645T|1|0.28|ENSG00000173801|chr17:41757528-41757528|C/T|missense_variant	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.2603149414062	2	568.259976	1134.5054	1.656	0.00094102	-1.1673	-0.00066334	0.48864	0.00027768	568.259309416945	15.747	0.3664	15.747	15.63	15.997	0					13	7	3	0	0	0	0.002607	1	4207	4207		173.39	96.618	1	723650			16867	6450	10414	10464	17133	17133					-0.0564729557827377
HSSGPMVEK	9	Unmodified	_HSSGPMVEK_					0	0	0		FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant;ENSG00000069509|ENST00000378045|FUNDC1;ENST00000483115.1_1_X:44383446-44401387:-|nuORF	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.234619140625	2	486.234384	970.454216	1.2222	0.00059426	0.61979	0.00030137	1.842	0.00089563	486.23467070179703	15.479	0.082655	15.479	15.429	15.512	0					6	3	2	0	0	0	0.13726	1	3378	3378		70.816	2.0294	1	45410			16868	1436	10415	10465	17134	17134					-0.03219335876690366
HSSGPMVEK	9	Unmodified	_HSSGPMVEK_					0	0	0		FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant;ENSG00000069509|ENST00000378045|FUNDC1;ENST00000483115.1_1_X:44383446-44401387:-|nuORF	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2351379394531	2	486.234384	970.454216	0.36598	0.00017795	-0.50358	-0.00024486	-0.1376	-6.6908E-05	486.2340866622323	15.793	0.13241	15.793	15.709	15.841	0					6	3	2	0	0	0	0.015496	1	4146	4146		129.42	38.645	1	397090			16869	1436	10415	10465	17135	17135					-0.03219335876690366
HSSGPMVEK	9	Unmodified	_HSSGPMVEK_					0	0	0		FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant;ENSG00000069509|ENST00000378045|FUNDC1;ENST00000483115.1_1_X:44383446-44401387:-|nuORF	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2342834472656	2	486.234384	970.454216	-0.087344	-4.247E-05	-0.33681	-0.00016377	-0.42415	-0.00020624	486.2343094156056	15.745	0.30955	15.745	15.686	15.996	0					13	6	3	0	0	0	0.015496	1	4375	4375		129.42	31.949	1	1281800			16870	1436	10415	10465	17136	17136					-0.03219335876690366
HSSGPMVEK	9	Unmodified	_HSSGPMVEK_					0	0	0		FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant;ENSG00000069509|ENST00000378045|FUNDC1;ENST00000483115.1_1_X:44383446-44401387:-|nuORF	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2341003417969	2	486.234384	970.454216	0.38137	0.00018543	-0.64666	-0.00031443	-0.26529	-0.00012899	486.23391330420327	15.554	0.12863	15.554	15.482	15.61	0					6	4	2	0	0	0	0.15163	1	3506	3506		67.494	8.7117	1	99388			16871	1436	10415	10465	17137	17137					-0.03219335876690366
HSSGPMVEK	9	Unmodified	_HSSGPMVEK_					0	0	0		FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant;ENSG00000069509|ENST00000378045|FUNDC1;ENST00000483115.1_1_X:44383446-44401387:-|nuORF	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	FUNDC1|p.F37C|1|0.33|ENSG00000069509|chrX:44542020-44542020|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2341003417969	2	486.234384	970.454216	-0.55312	-0.00026894	-0.22389	-0.00010886	-0.777	-0.00037781	486.2344691885234	15.755	0.26585	15.755	15.647	15.913	0					13	5	4	0	0	0	0.02953	1	4233	4233		109.48	30.027	1	1585300			16872	1436	10415	10465	17138	17138					-0.03219335876690366
HSSLASAVPL	10	Unmodified	_HSSLASAVPL_					0	0	0			REV__nc|ENSG00000144560|Q14135-2|VGLL4	REV__nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2712097167969	2	491.271824	980.529095	0.55455	0.00027244	-0.0042386	-2.0823E-06	0.55032	0.00027035	491.27179342348234	21.353	0.16117	21.353	21.261	21.422	0					5	3	2	0	0	0	0.57532	1	6172	6172		37.159	6.6555	1	64143	+		16873	15236	10416	10466	17139	17139					0.03805169926192775
HSSPSAVAVG	10	Unmodified	_HSSPSAVAVG_					0	0	0			REV__ENST00000344823.9_1_16:3451270-3451549:+|nuORF	REV__ENST00000344823.9_1_16:3451270-3451549:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.232666015625	2	456.232699	910.450845	-0.60095	-0.00027417	-1.2963	-0.00059143	-1.8973	-0.0008656	456.232592338259	12.923	0.38064	12.923	12.625	13.006	0					21	11	3	0	0	0	0.44469	1	2792	2792		51.335	1.8939	1	285140	+		16874	18477	10417	10467	17140	17140					-0.007962626590369837
HSSQVSYQ	8	Unmodified	_HSSQVSYQ_					0	0	0		ENST00000264156.2_1_2:136598161-136598251:-|nuORF	ENST00000264156.2_1_2:136598161-136598251:-|nuORF	ENST00000264156.2_1_2:136598161-136598251:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2143249511719	2	468.214506	934.414459	0.31207	0.00014612	-0.81256	-0.00038045	-0.50049	-0.00023434	468.2142436144118	13.23	0.086588	13.23	13.189	13.276	0					4	2	2	0	0	0	0.78142	1	2980	2980		23.042	1.3402	1	145870			16875	8324	10418	10468	17141	17141					-0.05537139555747217
HSSVNYKGLR	10	Unmodified	_HSSVNYKGLR_					0	0	0		DPP4|p.D488Y|1|0.18|ENSG00000197635|chr2:162017114-162017114|C/A|missense_variant	DPP4|p.D488Y|1|0.18|ENSG00000197635|chr2:162017114-162017114|C/A|missense_variant	DPP4|p.D488Y|1|0.18|ENSG00000197635|chr2:162017114-162017114|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	387.8782043457031	3	387.543878	1159.60981	0.55226	0.00021403	-0.47903	-0.00018564	0.073235	2.8382E-05	387.5437210462381	18.378	0.22536	18.378	18.286	18.511	0					32	9	5	0	0	0	0.45669	1	4542	4542		50.034	2.8058	1	1796400			16876	842	10419	10469	17142	17142					0.03638450969083351
HSSVPEALMY	10	Unmodified	_HSSVPEALMY_					0	0	0		ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.2689819335938	2	567.268424	1132.5223	0.12295	6.9747E-05	0.26772	0.00015187	0.39068	0.00022162	567.2687199516101	33.508	0.29428	33.508	33.361	33.655	0					22	11	3	0	0	0	0.52707	1	11215	11215		42.396	12.555	1	151000			16877	2081	10420	10470	17143	17143					-0.038665110166903105
HSSVPEALMY	10	Unmodified	_HSSVPEALMY_					0	0	0		ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.2693481445312	2	567.268424	1132.5223	-1.2158	-0.0006897	2.2907	0.0012994	1.0749	0.00060974	567.2696960486802	33.474	0.26344	33.474	33.344	33.608	0					12	7	2	0	0	0	0.26673	1	11726	11726		71.296	0	1	172810			16878	2081	10420	10470	17144	17144					-0.038665110166903105
HSTEVSCDS	9	Unmodified	_HSTEVSCDS_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9;ADCY9|p.L286Cfs*19|1|0.23|ENSG00000162104|chr16:4114588-4114588|C/-|frameshift_variant;ADCY9|p.P366Qfs*18|1|0.03|ENSG00000162104|chr16:4114339-4114346|GTTCTTGG/-|frameshift_variant;ADCY9|p.A149Rfs*38|1|0.11|ENSG00000162104|chr16:4114999-4114999|G/-|frameshift_variant	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.1271057128906	3	322.127401	963.360375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.369	1	42.369	41.869	42.869	0								0	0	0	0.37233	1	16055	16055		19.104	0	1				16879	5442	10421	10471	17145	17145					-0.12277099769642064
HSTLPEAPA	9	Unmodified	_HSTLPEAPA_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.73468017578125	2	461.735074	921.455596	-2.4881	-0.0011488	1.4057	0.00064907	-1.0824	-0.00049978	461.7358001764527	24.634	0.28134	24.634	24.533	24.814	0					10	6	3	0	0	0	0.51817	1	7726	7726		30.504	2.6214	1	120180			16880	5904	10422	10472	17146	17146					-0.00827378516294175
HSTLPNTDL	9	Unmodified	_HSTLPNTDL_					0	0	0		ENST00000596217.1_2_19:50431895-50432066:-|nuORF	ENST00000596217.1_2_19:50431895-50432066:-|nuORF	ENST00000596217.1_2_19:50431895-50432066:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2502136230469	2	499.251089	996.487624	0.67593	0.00033746	-1.9835	-0.00099027	-1.3076	-0.00065281	499.2501881097413	39.159	0.1429	39.159	39.09	39.233	0					12	5	3	0	0	0	0.33044	1	14894	14894		47.657	5.1829	1	151700			16881	11003	10423	10473	17147	17147					-0.01076010833151031
HSVFVNVSK	9	Unmodified	_HSVFVNVSK_					0	0	0		ENSG00000126524|ENST00000246868|SBDS	ENSG00000126524|ENST00000246868|SBDS	ENSG00000126524|ENST00000246868|SBDS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7795104980469	2	508.779816	1015.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.788	1	23.788	23.288	24.288	0								0	0	0	0.30547	1	7924	7924		34.087	8.6363	1				16882	3479	10424	10474	17148	17148					0.03792876163095116
HTAAQLGEK	9	Unmodified	_HTAAQLGEK_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.75372314453125	2	477.753798	953.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.452	1	15.452	14.952	15.952	0								0	0	0	0.241	1	3993	3993		45.022	14.519	1				16883	1351	10425	10475	17149	17149					0.014437127493351909
HTACVTALAYE	11	Unmodified	_HTACVTALAYE_					0	0	0		nc|ENSG00000206530|Q96MT7-1|CFAP44;ENSG00000206530|ENST00000393845|CFAP44	nc|ENSG00000206530|Q96MT7-1|CFAP44	nc|ENSG00000206530|Q96MT7-1|CFAP44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.7788696289062	2	589.779156	1177.54376	0.52587	0.00031014	-1.9957	-0.001177	-1.4698	-0.00086688	589.7777103048257	34.446	0.12619	34.446	34.376	34.503	0					5	4	2	0	0	0	0.64562	1	12207	12207		32.812	4.7309	1	48821			16884	7769	10426	10476	17150	17150					-0.03791125988004751
HTALTKGLAG	10	Unmodified	_HTALTKGLAG_					0	0	0			REV__ENST00000492066.5_1_11:62594823-62598548:-|nuORF	REV__ENST00000492066.5_1_11:62594823-62598548:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7786865234375	2	484.779816	967.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.389	1	18.389	17.889	18.889	0								0	0	0	0.39665	1	5370	5370		31.53	7.0106	1		+		16885	19724	10427	10477	17151	17151					0.06000876163091107
HTAQHEVAHL	10	Unmodified	_HTAQHEVAHL_					0	0	0			REV__ENST00000295598.9_1_1:116947075-116947252:+|nuORF	REV__ENST00000295598.9_1_1:116947075-116947252:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.7876586914062	2	571.788704	1141.56285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.585	1	34.585	34.085	35.085	0								0	0	0	0.40862	1	12254	12254		27.882	0	1		+		16886	18173	10428	10478	17152	17152					-0.0022640858205704717
HTASPTGMMK	10	Unmodified	_HTASPTGMMK_					0	0	0		nc|ENSG00000150961|O94855-2|SEC24D;ENSG00000150961|ENST00000280551|SEC24D	nc|ENSG00000150961|O94855-2|SEC24D	nc|ENSG00000150961|O94855-2|SEC24D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7493896484375	2	530.749344	1059.48414	1.9771	0.0010493	-1.3893	-0.00073736	0.58777	0.00031196	530.748879553737	19.894	0.1972	19.894	19.757	19.954	0					7	4	2	0	0	0	0.39827	1	6070	6070		56.434	15.656	1	181350			16887	4939	10429	10479	17153	17153					-0.04322720202981145
HTASVIGNK	9	Unmodified	_HTASVIGNK_					0	0	0		HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant;HCFC2|p.A339Hfs*2|1|0.43|ENSG00000111727|chr12:104082847-104082847|A/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.S246N|1|0.23|ENSG00000111727|chr12:104080800-104080800|G/A|missense_variant	HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7562255859375	2	463.756341	925.498129	0.058214	2.6997E-05	0.5465	0.00025344	0.60471	0.00028044	463.75657123521927	16.16	0.14632	16.16	16.079	16.225	0					5	3	2	0	0	0	0.11898	1	4318	4318		75.043	29.071	1	132120			16888	2693	10430	10480	17154	17154					0.032400166119600726
HTDKGSFLK	9	Unmodified	_HTDKGSFLK_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;ATAD5|p.K671Nfs*36|1|0.37|ENSG00000176208|chr17:30837246-30837246|A/-|frameshift_variant;ENST00000585133.1_1_17:29162236-29196669:+|nuORF;ATAD5|p.F1193Lfs*6|2|0.35|ENSG00000176208|chr17:30869612-30869612|T/-|frameshift_variant;nc|ENSG00000176208|Q96QE3-2|ATAD5;ATAD5|p.S1470Ffs*4|1|0.42|ENSG00000176208|chr17:30892750-30892751|-/T|frameshift_variant;ATAD5|p.S1470Pfs*10|1|0.29|ENSG00000176208|chr17:30892751-30892751|T/-|frameshift_variant	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7777099609375	2	516.777274	1031.53999	0.2007	0.00010372	0.74514	0.00038507	0.94584	0.00048879	516.7776578300642	17.939	0.20861	17.939	17.883	18.092	0					5	4	2	0	0	0	0.13726	1	5286	5286		70.816	9.8443	1	292550			16889	6597	10431	10481	17155	17155					0.02548572300474916
HTDLPSPLK	9	Unmodified	_HTDLPSPLK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.27978515625	2	504.279649	1006.54475	0.098427	4.9635E-05	0.0037128	1.8723E-06	0.10214	5.1507E-05	504.279683271423	27.161	0.61018	27.161	26.677	27.287	0					28	12	3	0	0	0	0.24334	1	9782	9782		56.434	12.317	1	257360			16890	11751	10432	10482	17156	17156					0.0417345644324314
HTDLPSPLK	9	Unmodified	_HTDLPSPLK_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2801208496094	2	504.279649	1006.54475	-0.3791	-0.00019117	-0.42067	-0.00021213	-0.79976	-0.0004033	504.27971829394534	27.035	0.61842	27.035	26.654	27.272	0					31	12	3	0	0	0	0.16806	1	9602	9602		65.465	29.019	1	360840			16891	11751	10432	10482	17157	17157					0.0417345644324314
HTFGGPLLK	9	Unmodified	_HTFGGPLLK_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.27923583984375	2	485.279452	968.544351	0.34702	0.0001684	-0.29658	-0.00014393	0.050433	2.4474E-05	485.2793561009692	29.065	0.2556	29.065	28.902	29.157	0					10	6	2	0	0	0	0.14603	1	10350	10350		68.787	33.169	1	86738			16892	5418	10433	10483	17158	17158					0.058820815140506966
HTGPGLLSM	9	Unmodified	_HTGPGLLSM_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;ENST00000470213.5_1_1:40214588-40218763:+|nuORF	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7335510253906	2	456.73402	911.453487	0.75679	0.00034565	-1.156	-0.00052801	-0.39926	-0.00018235	456.73354706783226	37.152	0.70861	37.152	36.864	37.573	0					44	20	3	0	0	0	0.30951	1	14087	14087		49.442	0	1	295620			16893	5044	10434	10484	17159	17159					-0.005781305257414715
HTGSQLKCP	9	Unmodified	_HTGSQLKCP_					0	0	0			REV__ENSG00000102265|ENST00000218388|TIMP1	REV__ENSG00000102265|ENST00000218388|TIMP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.74249267578125	2	485.742376	969.4702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.986	1	20.986	20.486	21.486	0								0	0	0	0.32356	1	6888	6888		30.504	3.7075	1		+		16894	13629	10435	10485	17160	17160					-0.015756296397853475
HTHPKEAATD	10	Unmodified	_HTHPKEAATD_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7672729492188	2	553.764894	1105.51524	1.8191	0.0010074	1.5295	0.00084697	3.3486	0.0018543	553.766083867777	15.984	0.14162	15.984	15.937	16.079	0					7	3	3	0	0	0	0.69544	1	4272	4272		22.58	0.61977	1	206730			16895	1454	10436	10486	17161	17161					-0.03330107572924135
HTIDWVREK	9	Unmodified	_HTIDWVREK_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3;ENST00000502998.1_1_4:170601253-170601544:+|nuORF;CLCN3|p.W193Cfs*6|1|0.1|ENSG00000109572|chr4:169689202-169689203|-/TTGGA|frameshift_variant;CLCN3|p.R311Gfs*14|4|0.22|ENSG00000109572|chr4:169692309-169692309|A/-|frameshift_variant;CLCN3|p.F354Lfs*4|1|0.33|ENSG00000109572|chr4:169697228-169697228|T/-|frameshift_variant;CLCN3|p.Y378Mfs*19|1|0.27|ENSG00000109572|chr4:169697298-169697298|T/-|frameshift_variant;nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;CLCN3|p.D799Ifs*17|1|0.33|ENSG00000109572|chr4:169719928-169719928|A/-|frameshift_variant;ENSG00000109572|ENST00000513761|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2119445800781	3	395.212128	1182.61456	0.41132	0.00016256	-0.30739	-0.00012148	0.10393	4.1075E-05	395.21191009754455	23.804	0.41308	23.804	23.666	24.079	0					15	8	3	0	0	0	0.25761	1	8120	8120		54.722	15.969	1	549990			16896	11478	10437	10487	17162	17162					0.030553351118669525
HTISPFMNK	9	Unmodified	_HTISPFMNK_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENST00000492709.5_1_20:30126008-30136787:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.773681640625	2	537.773677	1073.5328	1.3336	0.00071719	-1.1118	-0.00059791	0.22181	0.00011929	537.7730808423269	26.903	0.21619	26.903	26.778	26.994	0					8	4	2	0	0	0	0.15163	1	9689	9689		67.494	25.098	1	166640			16897	2106	10438	10488	17163	17163					-0.0010248357161799504
HTLDSYRILQK	11	Unmodified	_HTLDSYRILQK_					0	0	0		nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.589111328125	3	458.589376	1372.7463	-0.44138	-0.00020241	-0.29191	-0.00013387	-0.73329	-0.00033628	458.5892479774192	28.066	0.46704	28.066	27.959	28.426	0					19	9	3	0	0	0	0.36734	1	10135	10135		55.084	10.062	1	513720			16898	3928	10439	10489	17164	17164					0.07483520408959521
HTLFSNVQR	9	Unmodified	_HTLFSNVQR_					0	0	0		ARHGEF15|p.L618Rfs*24|1|0.38|ENSG00000198844|chr17:8318643-8318643|T/-|frameshift_variant;ENSG00000198844|ENST00000361926|ARHGEF15	ARHGEF15|p.L618Rfs*24|1|0.38|ENSG00000198844|chr17:8318643-8318643|T/-|frameshift_variant	ARHGEF15|p.L618Rfs*24|1|0.38|ENSG00000198844|chr17:8318643-8318643|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2921142578125	2	551.293622	1100.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.486	1	13.486	12.986	13.986	0								0	0	0	0.36266	1	3081	3081		21.96	2.5999	1				16899	215	10440	10490	17165	17165					0.026427794233086388
HTLHDFHRR	9	Unmodified	_HTLHDFHRR_					0	0	0			REV__ENST00000431285.5_1_3:9471730-9475177:+|nuORF	REV__ENST00000431285.5_1_3:9471730-9475177:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.8153076171875	2	609.815587	1217.61662	-0.69936	-0.00042648	-0.034919	-2.1294E-05	-0.73428	-0.00044778	609.8155736934739	15.85	0.29487	15.85	15.726	16.021	0					18	7	3	0	0	0	0.18416	1	4168	4168		66.429	66.429	1	1006300	+		16900	19165	10441	10491	17166	17166					0.016518086403266352
HTLHDFHRR	9	Unmodified	_HTLHDFHRR_					0	0	0			REV__ENST00000431285.5_1_3:9471730-9475177:+|nuORF	REV__ENST00000431285.5_1_3:9471730-9475177:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.8150634765625	2	609.815587	1217.61662	0.49637	0.00030269	-1.1576	-0.00070594	-0.66125	-0.00040324	609.8148627128796	15.811	0.25963	15.811	15.702	15.962	0					10	5	3	0	0	0	0.38666	1	4406	4406		44.117	14.947	1	791960	+		16901	19165	10441	10491	17167	17167					0.016518086403266352
HTLRRHSIC	9	Unmodified	_HTLRRHSIC_					0	0	0			REV__nc|ENSG00000196104|Q9BQ16-4|SPOCK3	REV__nc|ENSG00000196104|Q9BQ16-4|SPOCK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.80126953125	2	561.801091	1121.58763	0.67971	0.00038186	-0.24279	-0.0001364	0.43692	0.00024546	561.8011613834695	31.052	0.16037	31.052	30.997	31.157	0					9	3	3	0	0	0	0.41113	1	11685	11685		40.778	5.1599	1	175880	+		16902	17224	10442	10492	17168	17168					0.0316994801967212
HTMEFALVK	9	Unmodified	_HTMEFALVK_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2843627929688	2	538.283877	1074.5532	1.4805	0.00079692	-0.58111	-0.0003128	0.89937	0.00048412	538.2838674690425	32.832	0.3241	32.832	32.731	33.055	0					28	13	4	0	0	0	0.17854	1	10614	10614		64.207	8.7031	1	359060			16903	6911	10443	10493	17169	17169					0.01890687088211962
HTMEFALVK	9	Unmodified	_HTMEFALVK_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2841186523438	2	538.283877	1074.5532	2.0465	0.0011016	-0.71473	-0.00038473	1.3318	0.00071689	538.2835932535841	33.087	0.4877	33.087	32.981	33.469	0					32	13	3	0	0	0	0.11898	1	12186	12186		75.043	3.7476	1	2018800			16904	6911	10443	10493	17170	17170					0.01890687088211962
HTMEFALVK	9	Unmodified	_HTMEFALVK_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.28564453125	2	538.283877	1074.5532	2.2144	0.001192	-1.3854	-0.00074574	0.82897	0.00044622	538.2832769057844	32.864	0.31931	32.864	32.738	33.057	0					21	8	4	0	0	0	0.19605	1	11448	11448		62.107	17.991	1	402080			16905	6911	10443	10493	17171	17171					0.01890687088211962
HTMEFALVK	9	Unmodified	_HTMEFALVK_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2843017578125	2	538.283877	1074.5532	0.69286	0.00037296	0.22681	0.00012209	0.91967	0.00049504	538.2840537781572	33.027	0.79041	33.027	32.926	33.716	0					42	16	4	0	0	0	0.01873	1	12496	12496		124.08	17.665	1	7020400			16906	6911	10443	10493	17172	17172					0.01890687088211962
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant	TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	633.3699951171875	2	633.369861	1264.72517	0.3894	0.00024664	-1.2437	-0.00078772	-0.85429	-0.00054108	633.3688943905844	53.117	0.47033	53.117	52.889	53.36	0					37	29	2	0	0	0	0.65797	1	17037	17037		31.634	3.5528	1	87937			16907	6793	10444	10494	17173	17173					0.10339555100085818
HTNLVLATM	9	Unmodified	_HTNLVLATM_					0	0	0			REV__ENST00000607516.1_1_3:112051993-112054738:+|nuORF	REV__ENST00000607516.1_1_3:112051993-112054738:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2669982910156	2	500.268227	998.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.191	1	34.191	33.691	34.691	0								0	0	0	0.29774	1	13157	13157		35.618	2.8059	1		+		16908	20624	10445	10495	17174	17174					0.02258114054109228
HTPLAVAAF	9	Unmodified	_HTPLAVAAF_					0	0	0			REV__ENST00000474298.5_1_2:85097899-85133968:-|nuORF	REV__ENST00000474298.5_1_2:85097899-85133968:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7564697265625	2	463.758352	925.502152	-0.14268	-6.6167E-05	-3.7556	-0.0017417	-3.8983	-0.0018079	463.75692601020125	16.119	0.11577	16.119	16.03	16.145	0					4	2	2	0	0	0	0.21116	1	4542	4542		60.294	15.763	1	85886	+		16909	19515	10446	10496	17175	17175					0.036421061056557846
HTPRTYKIAPK	11	Unmodified	_HTPRTYKIAPK_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.9224853515625	3	437.922578	1310.7459	0.020153	8.8254E-06	0.05325	2.3319E-05	0.073403	3.2145E-05	437.9224993416931	27.854	0.3121	27.854	27.72	28.032	0					11	7	2	0	0	0	0.63225	1	9792	9792		34.087	1.0471	1	80547	+		16910	13268	10447	10497	17176	17176					0.10296145479765073
HTQIDEQI	8	Unmodified	_HTQIDEQI_					0	0	0		tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.24267578125	2	492.243264	982.471974	-0.036128	-1.7784E-05	-0.60122	-0.00029595	-0.63735	-0.00031373	492.2430383478047	27.505	0.33501	27.505	27.294	27.629	0					11	8	2	0	0	0	0.63077	1	9035	9035		44.117	3.3386	1	57195			16911	22826	10448	10498	17177	17177					-0.019962973501833403
HTQKYAEVY	9	Unmodified	_HTQKYAEVY_					0	0	0			REV__SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	REV__SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.7818603515625	2	569.780013	1137.54547	1.9785	0.0011273	1.3482	0.00076816	3.3266	0.0018954	569.7807424016079	36.936	0.43941	36.936	36.831	37.271	0					24	13	2	0	0	0	0.071197	1	14421	14421		87.754	10.98	1	1519400	+		16912	17237	10449	10499	17178	17178					-0.017797489077111095
HTQKYAEVY	9	Unmodified	_HTQKYAEVY_					0	0	0			REV__SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	REV__SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7817993164062	2	569.780013	1137.54547	3.4365	0.0019581	-0.26728	-0.00015229	3.1693	0.0018058	569.7798014225535	36.905	1.1052	36.905	36.445	37.55	0					31	22	2	0	0	0	0.03984	1	14369	14369		99.375	14.459	1	1702300	+		16913	17237	10449	10499	17179	17179					-0.017797489077111095
HTQMVMALTL	10	2 Oxidation (M)	_HTQM(Oxidation (M))VM(Oxidation (M))ALTL_		HTQM(1)VM(1)ALTL		HTQM(43)VM(43)ALTL	0	0	2		ENST00000483258.1_1_3:9952571-9953043:+|nuORF;nc|ENSG00000163701|Q8NFR9-4|IL17RE;ENST00000383815.7_1_3:9944714-9956386:+|nuORF;nc|ENSG00000163701|Q8NFR9-3|IL17RE;nc|ENSG00000163701|Q8NFR9-2|IL17RE;ENSG00000163701|ENST00000383814|IL17RE	ENST00000483258.1_1_3:9952571-9953043:+|nuORF	ENST00000483258.1_1_3:9952571-9953043:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7916870117188	2	588.791209	1175.56787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.402	1	42.402	41.902	42.902	0								0	0	0	0.35072	1	16921	16921		42.864	8.9426	1				16914	5597	10450	10500	17180	17180		228;229			-0.012896088259367389
HTQVLFIAK	9	Unmodified	_HTQVLFIAK_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.8133544921875	2	528.813659	1055.61277	0.90674	0.0004795	-0.038698	-2.0464E-05	0.86804	0.00045903	528.8133549054148	29.776	0.21715	29.776	29.667	29.884	0					6	4	2	0	0	0	0.15163	1	11073	11073		67.494	0	1	88941			16915	2353	10451	10501	17181	17181					0.08718326093890028
HTQVLFIAK	9	Unmodified	_HTQVLFIAK_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.8141479492188	2	528.813659	1055.61277	0.72045	0.00038099	1.0239	0.00054146	1.7444	0.00092244	528.8138902321941	29.743	0.21346	29.743	29.648	29.862	0					8	4	3	0	0	0	0.44593	1	10951	10951		37.812	0	1	78166			16916	2353	10451	10501	17182	17182					0.08718326093890028
HTRALLQG	8	Unmodified	_HTRALLQG_					0	0	0		ENST00000327158.4_1_17:904373-904769:+|nuORF	ENST00000327158.4_1_17:904373-904769:+|nuORF	ENST00000327158.4_1_17:904373-904769:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2587890625	2	448.259051	894.503549	-0.44398	-0.00019902	0.34853	0.00015623	-0.095452	-4.2787E-05	448.2591013258868	50.067	0.1877	50.067	49.973	50.161	0					14	8	2	0	0	0	0.79882	1	18049	18049		19.36	0	1	188620			16917	8654	10452	10502	17183	17183					0.052077401944416124
HTREYQEK	8	Unmodified	_HTREYQEK_					0	0	0		ENST00000525002.5_1_6:135521662-135539115:+|nuORF	ENST00000525002.5_1_6:135521662-135539115:+|nuORF	ENST00000525002.5_1_6:135521662-135539115:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7652587890625	2	545.767437	1089.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.311	1	11.311	10.811	11.811	0								0	0	0	1.7419	1	2285	2285		21.96	7.2958	1				16918	10353	10453	10503	17184	17184					-0.020858037102925664
HTRTIESIL	9	Unmodified	_HTRTIESIL_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;ENST00000478896.2_1_10:75757878-75863603:+|nuORF	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3040771484375	2	535.303655	1068.59276	0.17608	9.4256E-05	0.7356	0.00039377	0.91168	0.00048803	535.3038505837299	37.067	0.3275	37.067	36.93	37.257	0					15	9	2	0	0	0	0.39215	1	14013	14013		42.396	6.7778	1	186970			16919	1166	10454	10504	17185	17185					0.06120530363295984
HTSEVVAIKK	10	Unmodified	_HTSEVVAIKK_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3;TAOK3|p.I311Nfs*13|2|0.27|ENSG00000135090|chr12:118201351-118201352|-/T|frameshift_variant	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.3280029296875	2	556.327131	1110.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.347	1	17.347	16.847	17.847	0								0	0	0	0.3805	1	4121	4121		36.447	7.2767	1				16920	3964	10455	10505	17186	17186					0.08881389914427018
HTSEVVAIKK	10	Unmodified	_HTSEVVAIKK_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3;TAOK3|p.I311Nfs*13|2|0.27|ENSG00000135090|chr12:118201351-118201352|-/T|frameshift_variant	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.3275756835938	2	556.327131	1110.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.65	1	17.65	17.15	18.15	0								0	0	0	0.30854	1	5279	5279		49.536	8.7579	1				16921	3964	10455	10505	17187	17187					0.08881389914427018
HTSIMSYLN	9	Unmodified	_HTSIMSYLN_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2554321289062	2	533.255317	1064.49608	2.3255	0.0012401	-1.3579	-0.00072411	0.96761	0.00051598	533.2545275227443	38.602	0.24955	38.602	38.493	38.743	0					20	10	3	0	0	0	0.55379	1	14665	14665		26.693	2.4902	1	123060			16922	6558	10456	10506	17188	17188					-0.033587801881594714
HTSKIGVFPG	10	Unmodified	_HTSKIGVFPG_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7899780273438	2	521.787641	1041.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.787	1	15.787	15.287	16.287	0								0	0	0	0.41253	1	3667	3667		26.693	1.1189	1				16923	5088	10457	10507	17189	17189					0.04161162680156849
HTSQVLVDK	9	Unmodified	_HTSQVLVDK_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7817993164062	2	513.782556	1025.55056	1.4944	0.00076782	-1.9049	-0.0009787	-0.41046	-0.00021089	513.7815828122949	18.361	0.099228	18.361	18.27	18.369	0					4	2	2	0	0	0	0.30257	1	5347	5347		50.034	5.6563	1	48962			16924	1720	10458	10508	17190	17190					0.03880554954912441
HTSTVLTTK	9	Unmodified	_HTSTVLTTK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.27691650390625	2	494.277106	986.53966	-0.045821	-2.2648E-05	0.58562	0.00028946	0.53979	0.00026681	494.277567422801	17.326	1.0075	17.326	17.217	18.224	0					42	20	5	0	0	0	0.0076184	1	5111	5111		146.79	45.185	1	35334000			16925	3057	10459	10509	17191	17191					0.0458515258060288
HTSTVLTTK	9	Unmodified	_HTSTVLTTK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2767639160156	2	494.277106	986.53966	-0.63571	-0.00031421	0.18626	9.2063E-05	-0.44945	-0.00022215	494.27730282406384	17.302	0.75476	17.302	17.192	17.947	0					29	15	4	0	0	0	0.0047071	1	4951	4951		159.28	68.675	1	19309000			16926	3057	10459	10509	17192	17192					0.0458515258060288
HTSTVLTYF	9	Unmodified	_HTSTVLTYF_					0	0	0			REV__ENST00000534138.1_1_19:50311551-50312077:-|nuORF	REV__ENST00000534138.1_1_19:50311551-50312077:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.771484375	2	534.771657	1067.52876	1.9327	0.0010336	0.27414	0.0001466	2.2069	0.0011802	534.7717519409991	39.292	0.35821	39.292	39.168	39.526	0					19	12	2	0	0	0	0.32741	1	14924	14924		47.916	7.343	1	99536	+		16927	12897	10460	10510	17193	17193					-0.0023024979368528875
HTTGKLEKP	9	Unmodified	_HTTGKLEKP_					0	0	0			REV__ENST00000583155.1_1_1:192544922-192545060:+|nuORF	REV__ENST00000583155.1_1_1:192544922-192545060:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.78509521484375	2	505.785099	1009.55564	0.81687	0.00041316	-0.56455	-0.00028554	0.25231	0.00012762	505.78476896724817	31.217	0.21901	31.217	31.124	31.343	0					8	5	2	0	0	0	0.47473	1	11353	11353		35.152	0.97948	1	223860	+		16928	13423	10461	10511	17194	17194					0.051248588175326404
HTVDFTFNK	9	Unmodified	_HTVDFTFNK_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.2755737304688	2	554.774731	1107.53491	0.52043	0.00028872	-0.86076	-0.00047753	-0.34033	-0.0001888	555.2757197210507	30.017	0.1991	30.017	29.964	30.163	0					6	4	2	0	0	0	0.46194	1	11190	11190		36.447	0.82846	1	110680			16929	1683	10462	10512	17195	17195					-0.014557315621459566
HTVLSAQYK	9	Unmodified	_HTVLSAQYK_					0	0	0			REV__nc|ENSG00000263528|Q14164-2|IKBKE	REV__nc|ENSG00000263528|Q14164-2|IKBKE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.52581787109375	3	349.525825	1045.55564	0.51136	0.00017874	-0.41115	-0.00014371	0.10022	3.5029E-05	349.52560109702205	23.838	0.21915	23.838	23.728	23.947	0					9	4	3	0	0	0	0.47038	1	8276	8276		35.152	0	1	555450	+		16930	17784	10463	10513	17196	17196					0.03468858817495857
HTVLSAQYK	9	Unmodified	_HTVLSAQYK_					0	0	0			REV__nc|ENSG00000263528|Q14164-2|IKBKE	REV__nc|ENSG00000263528|Q14164-2|IKBKE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7852783203125	2	523.785099	1045.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.702	1	23.702	23.202	24.202	0								0	0	0	0.23445	1	7277	7277		45.972	8.8131	1		+		16931	17784	10463	10513	17197	17197					0.03468858817495857
HTYSHSSRR	9	Unmodified	_HTYSHSSRR_					0	0	0		BEAN1|p.R105H|1|0.36|ENSG00000166546|chr16:66477584-66477584|G/A|missense_variant	BEAN1|p.R105H|1|0.36|ENSG00000166546|chr16:66477584-66477584|G/A|missense_variant	BEAN1|p.R105H|1|0.36|ENSG00000166546|chr16:66477584-66477584|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.7784423828125	2	565.776128	1129.5377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.987	1	21.987	21.487	22.487	0								0	0	0	0.30009	1	6147	6147		20.947	0	1				16932	293	10464	10514	17198	17198					-0.021884633846184443
HVASQPVM	8	Unmodified	_HVASQPVM_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7206115722656	2	434.720913	867.427273	-0.43435	-0.00018882	-0.44215	-0.00019221	-0.8765	-0.00038103	434.7208777514421	27.745	0.79702	27.745	27.61	28.407	0					46	19	5	0	0	0	0.49887	1	9715	9715		60.294	2.4827	1	7152500			16933	7804	10465	10515	17199	17199					-0.011743996972199966
HVASQPVM	8	Unmodified	_HVASQPVM_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.7205505371094	2	434.720913	867.427273	-1.016	-0.00044169	0.15981	6.9472E-05	-0.85621	-0.00037221	434.721078432471	27.501	0.44944	27.501	27.373	27.822	0					38	15	4	0	0	0	0.7126	1	8733	8733		31.955	5.1588	1	1360200			16934	7804	10465	10515	17200	17200					-0.011743996972199966
HVASQPVM	8	Unmodified	_HVASQPVM_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.72064208984375	2	434.720913	867.427273	0.35575	0.00015465	-1.2922	-0.00056175	-0.93645	-0.00040709	434.7205266127949	27.739	0.77897	27.739	27.586	28.365	0					42	16	5	0	0	0	0.68754	1	10215	10215		35.201	1.6851	1	9201400			16935	7804	10465	10515	17201	17201					-0.011743996972199966
HVDDMPNAL	9	Unmodified	_HVDDMPNAL_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2325134277344	2	506.231842	1010.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.346	1	33.346	32.846	33.846	0								0	0	0	0.3368	1	12758	12758		27.882	3.6795	1				16936	7254	10466	10516	17202	17202					-0.05567639739331298
HVEQITRK	8	Unmodified	_HVEQITRK_					0	0	0		ENSG00000176946|ENST00000407315|THAP4;nc|ENSG00000176946|Q8WY91-2|THAP4	ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.79083251953125	2	505.790715	1009.56688	0.7439	0.00037626	-0.19889	-0.0001006	0.54501	0.00027566	505.790783794207	12.88	0.073465	12.88	12.833	12.907	0					7	4	2	0	0	0	0.49216	1	2475	2475		40.573	0	1	67571			16937	6637	10467	10517	17203	17203					0.06247680911644693
HVFGYGKSG	9	Unmodified	_HVFGYGKSG_					0	0	0			REV__nc|ENSG00000070756|P11940-2|PABPC1	REV__nc|ENSG00000070756|P11940-2|PABPC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.23846435546875	2	476.237784	950.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.941	1	24.941	24.441	25.441	0								0	0	0	0.33492	1	8790	8790		28.254	2.8041	1		+		16938	13178	10468	10518	17204	17204					-0.016196549337905708
HVGAPLNPV	9	Unmodified	_HVGAPLNPV_					0	0	0			REV__nc|ENSG00000172379|Q9HBZ2-2|ARNT2	REV__nc|ENSG00000172379|Q9HBZ2-2|ARNT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2563171386719	2	452.255977	902.497401	0.25337	0.00011459	0.40173	0.00018168	0.6551	0.00029627	452.25606755096305	31.632	0.22204	31.632	31.501	31.723	0					6	5	2	0	0	0	0.21116	1	11527	11527		60.294	10.852	1	75339	+		16939	16461	10469	10519	17205	17205					0.04225221962906289
HVGDPSVKK	9	Unmodified	_HVGDPSVKK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.77178955078125	2	483.771991	965.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.912	1	13.912	13.412	14.412	0								0	0	0	0.023427	1	2793	2793		82.75	41.972	1				16940	1294	10470	10520	17206	17206					0.04528589646054115
HVGDPSVKK	9	Unmodified	_HVGDPSVKK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7715148925781	2	483.771991	965.529429	-0.097087	-4.6968E-05	-0.025554	-1.2362E-05	-0.12264	-5.9331E-05	483.77206119006127	14.141	0.21001	14.141	13.991	14.201	0					12	4	3	0	0	0	0.27123	1	3573	3573		54.776	7.119	1	229710			16941	1294	10470	10520	17207	17207					0.04528589646054115
HVGDPSVKK	9	Unmodified	_HVGDPSVKK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7710876464844	2	483.771991	965.529429	0.24623	0.00011912	-0.67255	-0.00032536	-0.42632	-0.00020624	483.7713092406401	13.973	0.10806	13.973	13.905	14.013	0					7	4	2	0	0	0	0.21419	1	2887	2887		71.877	39.923	1	45899			16942	1294	10470	10520	17208	17208					0.04528589646054115
HVGDPSVKK	9	Unmodified	_HVGDPSVKK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7721862792969	2	483.771991	965.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.949	1	13.949	13.449	14.449	0								0	0	0	0.19616	1	2871	2871		52.937	12.159	1				16943	1294	10470	10520	17209	17209					0.04528589646054115
HVGDPSVKK	9	Unmodified	_HVGDPSVKK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.77197265625	2	483.771991	965.529429	-0.5914	-0.0002861	0.23998	0.00011609	-0.35142	-0.00017001	483.7721419829029	14.163	0.26142	14.163	13.961	14.222	0					12	5	3	0	0	0	0.11411	1	3426	3426		90.37	26.163	1	739740			16944	1294	10470	10520	17210	17210					0.04528589646054115
HVGRKTAEI	9	Unmodified	_HVGRKTAEI_					0	0	0			REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7904968261719	2	505.790715	1009.56688	0.81847	0.00041397	-1.0467	-0.00052939	-0.22818	-0.00011541	505.7902358718544	13.081	0.34496	13.081	13.006	13.351	0					14	9	2	0	0	0	0.048471	1	2905	2905		79.451	7.5735	1	1114200	+		16945	22019	10471	10521	17211	17211					0.06247680911644693
HVGRKTAEI	9	Unmodified	_HVGRKTAEI_					0	0	0			REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.79071044921875	2	505.790715	1009.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.094	1	13.094	12.594	13.594	0								0	0	0	0.072369	1	2953	2953		73.975	2.5968	1		+		16946	22019	10471	10521	17212	17212					0.06247680911644693
HVGRKTAEI	9	Unmodified	_HVGRKTAEI_					0	0	0			REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7907409667969	2	505.790715	1009.56688	1.2452	0.00062982	-0.76528	-0.00038707	0.47993	0.00024274	505.7902993487321	13.057	0.34259	13.057	13.006	13.349	0					11	7	3	0	0	0	0.07136	1	2945	2945		94.006	11.701	1	818440	+		16947	22019	10471	10521	17213	17213					0.06247680911644693
HVGVMVSYLS	10	Unmodified	_HVGVMVSYLS_					0	0	0			REV__nc|ENSG00000293416|E5RG02|PRSS46P	REV__nc|ENSG00000293416|E5RG02|PRSS46P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.78271484375	2	546.281334	1090.54812	1.2067	0.00065918	-0.55958	-0.00030569	0.64709	0.00035349	546.2814012623544	27.401	0.18127	27.401	27.318	27.499	0					10	6	2	0	0	0	0.69166	1	8433	8433		23.042	1.0826	1	37861	+		16948	21262	10472	10522	17214	17214					0.00646383225603131
HVHLNLEQF	9	Unmodified	_HVHLNLEQF_					0	0	0		tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.5330810546875	3	379.533091	1135.57744	0.81898	0.00031083	-1.379	-0.00052337	-0.56	-0.00021254	379.53267529484356	30.881	0.43671	30.881	30.703	31.14	0					14	10	2	0	0	0	0.61124	1	11195	11195		14.865	14.865	1	180820			16949	22958	10473	10523	17215	17215					0.015076635660989268
HVHLVSSR	8	Unmodified	_HVHLVSSR_					0	0	0			REV__ENSG00000149050|ENST00000278314|ZNF214	REV__ENSG00000149050|ENST00000278314|ZNF214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7635803222656	2	467.764501	933.514448	-2.184	-0.0010216	0.24633	0.00011522	-1.9376	-0.00090636	467.76461790282843	22.69	0.27658	22.69	22.592	22.869	0					13	6	3	0	0	0	0.24498	1	6806	6806		110.34	110.34	1	1188800	+		16950	15401	10474	10524	17216	17216					0.04503142568705698
HVIENSNAF	9	Unmodified	_HVIENSNAF_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.751220703125	2	515.751256	1029.48796	1.2193	0.00062885	-0.9082	-0.0004684	0.31109	0.00016044	515.7506136163229	27.928	0.30155	27.928	27.833	28.135	0					18	7	4	0	0	0	0.18416	1	9809	9809		63.534	2.5619	1	637700			16951	5424	10475	10525	17217	17217					-0.025605911132970505
HVIETLIGK	9	Unmodified	_HVIETLIGK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.3063049316406	2	505.305667	1008.59678	0.12055	6.0913E-05	-0.28107	-0.00014203	-0.16052	-8.1113E-05	505.30557298194105	30.154	0.7901	30.154	30.008	30.798	0					51	17	5	0	0	0	0.034359	2	11381	11213;11381		104.75	60.63	1	5420200			16952	4933	10476	10526	17218;17219	17219					0.09282619856992369
HVIETLIGK	9	Unmodified	_HVIETLIGK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.3059997558594	2	505.305667	1008.59678	0.11678	5.9008E-05	0.16115	8.1429E-05	0.27793	0.00014044	505.30574871232903	30.002	0.29871	30.002	29.876	30.175	0					16	7	3	0	0	0	0.023928	1	10146	10146		115.49	66.053	1	366500			16953	4933	10476	10526	17220	17220					0.09282619856992369
HVIETLIGK	9	Unmodified	_HVIETLIGK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.3055725097656	2	505.305667	1008.59678	-0.30788	-0.00015558	-0.02905	-1.4679E-05	-0.33693	-0.00017025	505.30568010312	30.108	0.59783	30.108	29.997	30.595	0					33	12	5	0	0	0	0.063171	1	11115	11115		90.601	46.224	1	4915700			16954	4933	10476	10526	17221	17221					0.09282619856992369
HVIRVLRQS	9	Unmodified	_HVIRVLRQS_					0	0	0		ENST00000367184.2_1_1:204435983-204436325:-|nuORF	ENST00000367184.2_1_1:204435983-204436325:-|nuORF	ENST00000367184.2_1_1:204435983-204436325:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.896484375	3	369.896363	1106.66726	-0.24245	-8.9681E-05	0.042742	1.581E-05	-0.19971	-7.387E-05	369.89643010965153	17.748	1.105	17.748	17.531	18.636	0					35	22	3	0	0	0	0.45358	1	5141	5141		37.159	8.0096	1	295220			16955	8909	10477	10527	17222	17222					0.11819337965312116
HVITKTMEL	9	Unmodified	_HVITKTMEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.2982788085938	2	536.296985	1070.57942	2.5478	0.0013664	-0.39957	-0.00021429	2.1483	0.0011521	536.2968073403134	27.516	0.12724	27.516	27.479	27.606	0					8	4	2	0	0	0	0.098791	1	8497	8497		79.713	16.406	1	79789			16956	5044	10478	10528	17223	17223					0.04694956259686478
HVITKTMEL	9	Unmodified	_HVITKTMEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.297607421875	2	536.296985	1070.57942	1.9147	0.0010269	-1.2597	-0.0006756	0.65498	0.00035126	536.2964731291008	27.773	0.35621	27.773	27.676	28.032	0					22	8	4	0	0	0	0.037569	1	9731	9731		101.6	22.15	1	585130			16957	5044	10478	10528	17224	17224					0.04694956259686478
HVITKTMEL	9	Unmodified	_HVITKTMEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.2984008789062	2	536.296985	1070.57942	5.0113	0.0026875	-3.5033	-0.0018788	1.508	0.00080873	536.2953153650144	27.575	0.21965	27.575	27.474	27.693	0					11	7	2	0	0	0	0.11898	1	8792	8792		75.043	14.071	1	106070			16958	5044	10478	10528	17225	17225					0.04694956259686478
HVITKTMEL	9	Unmodified	_HVITKTMEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2976684570312	2	536.296985	1070.57942	1.2591	0.00067527	-0.5757	-0.00030875	0.68343	0.00036652	536.2967462324298	27.773	0.36387	27.773	27.665	28.029	0					16	7	3	0	0	0	0.0059092	1	10088	10088		154.12	82.823	1	930350			16959	5044	10478	10528	17226	17226					0.04694956259686478
HVITKTMEL	9	Unmodified	_HVITKTMEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.2981567382812	2	536.296985	1070.57942	2.1696	0.0011635	-0.2526	-0.00013547	1.917	0.0010281	536.2967529153815	27.596	0.18101	27.596	27.549	27.73	0					6	4	2	0	0	0	0.12239	1	9057	9057		74.255	10.949	1	77913			16960	5044	10478	10528	17227	17227					0.04694956259686478
HVITKTMEL	9	Unmodified	_HVITKTMEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2974853515625	2	536.296985	1070.57942	0.702	0.00037648	0.051137	2.7425E-05	0.75314	0.00040391	536.2970528007219	27.721	0.26724	27.721	27.611	27.878	0					14	5	3	0	0	0	0.020674	1	9944	9944		120.87	59.896	1	851330			16961	5044	10478	10528	17228	17228					0.04694956259686478
HVITKTMEL	9	Oxidation (M)	_HVITKTM(Oxidation (M))EL_		HVITKTM(1)EL		HVITKTM(59)EL	0	0	1		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2965087890625	2	544.294442	1086.57433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.87	1	21.87	21.37	22.37	0								0	0	0	0.15451	1	7016	7016		58.782	11.125	1				16962	5044	10478	10529	17229	17229		207			0.03450652397077647
HVLAPTST	8	Unmodified	_HVLAPTST_					0	0	0			REV__IGDCC4|p.L859*|1|0.23|ENSG00000103742|chr15:65388940-65388940|G/-|frameshift_variant	REV__IGDCC4|p.L859*|1|0.23|ENSG00000103742|chr15:65388940-65388940|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2271728515625	2	413.226885	824.439217	-0.072855	-3.0106E-05	-0.26348	-0.00010888	-0.33633	-0.00013898	413.2267570198824	15.403	1.0877	15.403	15.182	16.27	0					56	37	2	0	0	0	0.79176	1	3753	3753		21.702	5.2292	1	282350	+		16963	13698	10479	10530	17230	17230					0.019975403176204054
HVLEAQDLIAK	11	Unmodified	_HVLEAQDLIAK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	618.8514404296875	2	618.85097	1235.68739	-0.2147	-0.00013287	0.33245	0.00020574	0.11775	7.2869E-05	618.8512575967133	33.223	0.20421	33.223	33.147	33.351	0					12	5	3	0	0	0	0.0142	1	12277	12277		123.11	63.181	1	254440			16964	4341	10480	10531	17231	17231					0.07897044114611163
HVLEAQDLIAK	11	Unmodified	_HVLEAQDLIAK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	618.8511352539062	2	618.85097	1235.68739	-0.026143	-1.6179E-05	0.46506	0.00028781	0.43892	0.00027163	618.8513294195328	33.159	0.2066	33.159	33.059	33.266	0					12	4	3	0	0	0	7.0259E-05	1	12588	12588		150.15	77.909	1	576840			16965	4341	10480	10531	17232	17232					0.07897044114611163
HVLGFATNLL	10	Unmodified	_HVLGFATNLL_					0	0	0			REV__MSTO1|p.R279C|1|0.28|ENSG00000125459|chr1:155612439-155612439|C/T|missense_variant	REV__MSTO1|p.R279C|1|0.28|ENSG00000125459|chr1:155612439-155612439|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.8109741210938	2	542.811116	1083.60768	1.0687	0.0005801	-1.1103	-0.00060268	-0.041611	-2.2587E-05	542.8103026805185	34.666	0.19422	34.666	34.609	34.803	0					9	6	2	0	0	0	0.63851	1	12295	12295		39.253	5.0803	1	80205	+		16966	14431	10481	10532	17233	17233					0.06922022231265146
HVLGKRREL	9	Unmodified	_HVLGKRREL_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000127831|P09327-2|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.89617919921875	3	369.896363	1106.66726	0.77157	0.0002854	-1.067	-0.00039469	-0.29546	-0.00010929	369.895980918592	17.797	0.60145	17.797	17.619	18.221	0					33	14	4	0	0	0	0.59802	1	5069	5069		21.96	0.27414	1	310790			16967	3517	10482	10533	17234	17234					0.11819337965334853
HVNITISAR	9	Unmodified	_HVNITISAR_					0	0	0		ENST00000330258.3_2_X:63410065-63410188:-|nuORF	ENST00000330258.3_2_X:63410065-63410188:-|nuORF	ENST00000330258.3_2_X:63410065-63410188:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7914733886719	2	505.790715	1009.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.856	1	12.856	12.356	13.356	0								0	0	0	0.061959	1	2525	2525		87.754	18.967	1				16968	8669	10483	10534	17235	17235					0.06247680911644693
HVPAILQYL	9	Unmodified	_HVPAILQYL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.3077392578125	2	527.30821	1052.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.738	1	30.738	30.238	31.238	0								0	0	0	0.34228	1	10123	10123		26.796	2.5934	1				16969	3193	10484	10535	17236	17236					0.07766923719600527
HVRGGGAP	8	Unmodified	_HVRGGGAP_					0	0	0			REV__ENSG00000198455|ENST00000374888|ZXDB	REV__ENSG00000198455|ENST00000374888|ZXDB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	375.7040710449219	2	375.703912	749.39327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.816	1	13.816	13.316	14.316	0								0	0	0	1.7419	1	3230	3230		28.254	6.5519	1		+		16970	17400	10485	10536	17237	17237					0.008549399260459722
HVSRHLRP	8	Unmodified	_HVSRHLRP_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H;FAM83H|p.G365Afs*180|1|0.14|ENSG00000180921|chr8:143728367-143728367|C/-|frameshift_variant	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2908630371094	2	501.291217	1000.56788	0.17221	8.6325E-05	-0.97923	-0.00049088	-0.80703	-0.00040455	501.2907679622691	49.232	1.0942	49.232	49.021	50.115	0					79	65	2	0	0	0	0.79719	1	16285	16285		18.324	15.165	1	73733			16971	6825	10486	10537	17238	17238					0.06761940071226036
HVSTLLPALL	10	Unmodified	_HVSTLLPALL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.329345703125	2	532.329142	1062.64373	-0.28276	-0.00015052	0.46501	0.00024754	0.18225	9.7018E-05	532.3294582775093	30.284	0.10219	30.284	30.214	30.316	0					5	3	2	0	0	0	0.61887	1	9939	9939		31.955	2.8053	1	75260			16972	7724	10487	10538	17239	17239					0.11491479408141458
HVSTVNPNY	9	Unmodified	_HVSTVNPNY_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4;ENSG00000198353|ENST00000430889|HOXC4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7515869140625	2	515.751256	1029.48796	0.81872	0.00042225	-0.75021	-0.00038692	0.068503	3.5331E-05	515.7510008816452	23.522	0.21711	23.522	23.361	23.578	0					8	4	2	0	0	0	0.13267	1	8101	8101		71.877	31.099	1	329500			16973	6917	10488	10539	17240	17240					-0.025605911132970505
HVSTVNPNY	9	Unmodified	_HVSTVNPNY_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4;ENSG00000198353|ENST00000430889|HOXC4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7510986328125	2	515.751256	1029.48796	0.17028	8.7823E-05	0.016907	8.7197E-06	0.18719	9.6543E-05	515.751278236029	23.492	0.26688	23.492	23.335	23.602	0					12	5	3	0	0	0	0.098791	1	7987	7987		79.713	37.316	1	432990			16974	6917	10488	10539	17241	17241					-0.025605911132970505
HVTAGASI	8	Unmodified	_HVTAGASI_					0	0	0			REV__ENST00000542454.2_2_14:96671156-96704150:+|nuORF	REV__ENST00000542454.2_2_14:96671156-96704150:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.2060241699219	2	378.205953	754.397353	0.024833	9.3921E-06	-0.035668	-1.349E-05	-0.010834	-4.0977E-06	378.2059573082284	20.915	0.12158	20.915	20.868	20.99	0					5	3	2	0	0	0	0.39542	1	5682	5682		71.378	19.079	1	144570	+		16975	20144	10489	10540	17242	17242					0.010329846291028844
HVVAASKAM	9	Unmodified	_HVVAASKAM_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.24932861328125	2	457.249837	912.485122	0.21602	9.8775E-05	-1.0614	-0.00048532	-0.84537	-0.00038655	457.2493895965422	17.796	0.096609	17.796	17.708	17.804	0					4	2	2	0	0	0	0.0406	1	5076	5076		98.629	18.917	1	79622			16976	6998	10490	10541	17243	17243					0.02537862228200538
HVVPPDSP	8	Unmodified	_HVVPPDSP_					0	0	0		ENST00000538576.5_1_1:113498038-113498314:-|nuORF	ENST00000538576.5_1_1:113498038-113498314:-|nuORF	ENST00000538576.5_1_1:113498038-113498314:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.2193908691406	2	424.21906	846.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.44	1	36.44	35.94	36.94	0								0	0	0	1.7419	1	11952	11952		26.796	3.7536	1				16977	10512	10491	10542	17244	17244					-0.005787461994259502
HVVVPGVA	8	Unmodified	_HVVVPGVA_					0	0	0			REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.2337951660156	2	389.234513	776.454474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.447	1	18.447	17.947	18.947	0								0	0	0	1.7419	1	5664	5664		16.705	0	1		+		16978	13817	10492	10543	17245	17245					0.057304519054810044
HVVVSTTKN	9	Unmodified	_HVVVSTTKN_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7779541015625	2	492.777274	983.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.807	1	15.807	15.307	16.307	0								0	0	0	0.35899	1	3676	3676		23.042	0	1		+		16979	15181	10493	10544	17246	17246					0.04756572300470907
HVYEQSSL	8	Unmodified	_HVYEQSSL_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7332458496094	2	481.732532	961.45051	-1.338	-0.00064455	1.3304	0.00064088	-0.0076073	-3.6647E-06	481.7331613142608	30.986	0.17042	30.986	30.895	31.065	0					10	6	2	0	0	0	0.69548	1	10246	10246		34.173	2.2177	1	83770	+		16980	15336	10494	10545	17247	17247					-0.03175682378889633
HVYNRPCHL	9	Unmodified	_HVYNRPCHL_					0	0	0			REV__ENSG00000106128|ENST00000326139|GHRHR	REV__ENSG00000106128|ENST00000326139|GHRHR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7814331054688	2	569.782367	1137.55018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.631	1	40.631	40.131	41.131	0								0	0	0	0.22106	1	16147	16147		47.916	8.6628	1		+		16981	13812	10495	10546	17248	17248					-0.01309143245953237
HWASISEHCR	10	Unmodified	_HWASISEHCR_					0	0	0		ENST00000375859.3_1_9:91093137-91093245:+|nuORF	ENST00000375859.3_1_9:91093137-91093245:+|nuORF	ENST00000375859.3_1_9:91093137-91093245:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	613.2837524414062	2	613.280189	1224.54582	2.9825	0.0018291	2.651	0.0016258	5.6335	0.0034549	613.2817181062846	12.91	0.46667	12.91	12.676	13.143	0					18	10	3	0	0	0	0.72365	1	2855	2855		18.262	4.125	1	654000			16982	9036	10496	10547	17249	17249					-0.05746652459515644
HWLLCLCE	8	Carbamidomethyl (C)	_HWLLC(Carbamidomethyl (C))LCE_	HWLLC(1)LCE		HWLLC(34)LC(-34)E		0	1	0		nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2489624023438	2	537.24898	1072.48341	2.1039	0.0011303	-1.2076	-0.00064876	0.89634	0.00048156	537.2481536936709	28.576	0.37067	28.576	28.486	28.857	0					18	9	3	0	0	0	0.59916	1	10105	10105		49.211	12.764	2	216550			16983	11608	10497	10548	17250	17250	457				-0.04993514852071712
HWMLEAQF	8	Unmodified	_HWMLEAQF_					0	0	0		PPP1R21|p.L588F|1|0.09|ENSG00000162869|chr2:48498564-48498564|A/C|missense_variant	PPP1R21|p.L588F|1|0.09|ENSG00000162869|chr2:48498564-48498564|A/C|missense_variant	PPP1R21|p.L588F|1|0.09|ENSG00000162869|chr2:48498564-48498564|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2490234375	2	531.247295	1060.48004	2.4373	0.0012948	0.96835	0.00051444	3.4056	0.0018092	531.2477519271697	35.493	0.83765	35.493	35.268	36.106	0					54	22	3	0	0	0	0.59411	1	13260	13260		50.025	5.4935	1	206210			16984	11957	10498	10549	17251	17251					-0.0477844163442569
HWMLEAQF	8	Unmodified	_HWMLEAQF_					0	0	0		PPP1R21|p.L588F|1|0.09|ENSG00000162869|chr2:48498564-48498564|A/C|missense_variant	PPP1R21|p.L588F|1|0.09|ENSG00000162869|chr2:48498564-48498564|A/C|missense_variant	PPP1R21|p.L588F|1|0.09|ENSG00000162869|chr2:48498564-48498564|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.248046875	2	531.247295	1060.48004	1.6887	0.00089713	0.54874	0.00029152	2.2375	0.0011886	531.2477895037046	35.402	1.0674	35.402	35.065	36.132	0					49	21	3	0	0	0	0.65276	1	13664	13664		40.573	1.3198	1	449010			16985	11957	10498	10549	17252	17252					-0.0477844163442569
HYAALAHYF	9	Unmodified	_HYAALAHYF_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7664794921875	2	546.766709	1091.51886	0.79159	0.00043282	-1.4997	-0.00082	-0.70812	-0.00038718	546.766005948565	36.405	0.57397	36.405	36.214	36.788	0					32	16	3	0	0	0	0.21025	1	14301	14301		60.404	34.83	1	390150			16986	3751	10499	10550	17253	17253					-0.023233930084188614
HYCTMFHTL	9	Unmodified	_HYCTMFHTL_					0	0	0		FNDC9|p.G213Wfs*2|1|0.39|ENSG00000172568|chr5:157342901-157342902|-/C|frameshift_variant;ENSG00000172568|ENST00000312349|FNDC9	FNDC9|p.G213Wfs*2|1|0.39|ENSG00000172568|chr5:157342901-157342902|-/C|frameshift_variant	FNDC9|p.G213Wfs*2|1|0.39|ENSG00000172568|chr5:157342901-157342902|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.753173828125	2	576.751887	1151.48922	3.29	0.0018975	-1.0681	-0.00061603	2.2219	0.0012815	576.7515534620662	35.661	1.8031	35.661	34.261	36.064	0					83	36	4	0	0	0	0.49003	1	13703	13703		33.516	0.70317	1	2224200			16987	6370	10500	10551	17254	17254					-0.08046416340380347
HYDPTINKW	9	Unmodified	_HYDPTINKW_					0	0	0		ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant;ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.2880859375	2	587.288005	1172.56146	1.4277	0.00083846	-1.2925	-0.00075908	0.13516	7.9376E-05	587.2872114722387	30.824	0.51032	30.824	30.714	31.224	0					25	10	4	0	0	0	0.010494	1	11468	11468		139.97	81.189	1	635370			16988	915	10501	10552	17255	17255					-0.01792042670808769
HYDVDIKPEKR	11	Unmodified	_HYDVDIKPEKR_					0	0	0		AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant;ENSG00000134698|ENST00000373210|AGO4	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2489318847656	3	467.249131	1398.72556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.51	1	19.51	19.01	20.01	0								0	0	0	0.45674	1	5297	5297		24.232	8.8987	1				16989	95	10502	10553	17256	17256					0.0421493002927491
HYGKVYLL	8	Unmodified	_HYGKVYLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.78173828125	2	496.781828	991.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.038	1	33.038	32.538	33.538	0								0	0	0	1.7419	1	12514	12514		50.025	11.003	1				16990	984	10503	10554	17257	17257					0.052989656568115606
HYKYILGL	8	Unmodified	_HYKYILGL_					0	0	0		ENST00000471640.1_1_2:183799522-183806825:-|nuORF	ENST00000471640.1_1_2:183799522-183806825:-|nuORF	ENST00000471640.1_1_2:183799522-183806825:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7887268066406	2	503.789653	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.506	1	20.506	20.006	21.006	0								0	0	0	1.7419	1	5500	5500		21.702	0	1				16991	9855	10504	10555	17258	17258					0.0621925217384387
HYKYILGL	8	Unmodified	_HYKYILGL_					0	0	0		ENST00000471640.1_1_2:183799522-183806825:-|nuORF	ENST00000471640.1_1_2:183799522-183806825:-|nuORF	ENST00000471640.1_1_2:183799522-183806825:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.78802490234375	2	503.789653	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.796	1	20.796	20.296	21.296	0								0	0	0	1.7419	1	5915	5915		44.531	0	1				16992	9855	10504	10555	17259	17259					0.0621925217384387
HYLAMPDIGG	10	Unmodified	_HYLAMPDIGG_					0	0	0			REV__tr|U7SIX5|U7SIX5_FUSNUTranscriptionterminationfactorRhoOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rhoPE=3SV=1	REV__tr|U7SIX5|U7SIX5_FUSNUTranscriptionterminationfactorRhoOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rhoPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.25927734375	2	537.257859	1072.50117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.125	1	42.125	41.625	42.625	0								0	0	0	0.2708	1	16793	16793		55.504	0.72789	1		+		16993	21721	10505	10556	17260	17260					-0.03218476325537267
HYPLNTVT	8	Unmodified	_HYPLNTVT_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.74542236328125	2	472.745442	943.476331	-0.56031	-0.00026488	0.54972	0.00025988	-0.010587	-5.0048E-06	472.7456978656445	33.767	0.45837	33.767	33.609	34.067	0					26	12	3	0	0	0	0.66372	1	12598	12598		38.806	1.647	1	1051500			16994	1617	10506	10557	17261	17261					0.0023321186339444466
HYQDVSCLQF	10	Carbamidomethyl (C)	_HYQDVSC(Carbamidomethyl (C))LQF_	HYQDVSC(1)LQF		HYQDVSC(49)LQF		0	1	0		ENSG00000065268|ENST00000585809|WDR18;WDR18|p.E207Sfs*15|1|0.3|ENSG00000065268|chr19:990869-990869|G/-|frameshift_variant	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	648.7869262695312	2	648.787512	1295.56047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.791	1	40.791	40.291	41.291	0								0	0	0	0.31444	1	15548	15548		48.602	9.8479	1				16995	1368	10507	10558	17262	17262	51				-0.075486251020493
HYRRGLRAG	9	Unmodified	_HYRRGLRAG_					0	0	0		ENST00000557314.5_1_14:20839728-20850189:-|nuORF	ENST00000557314.5_1_14:20839728-20850189:-|nuORF	ENST00000557314.5_1_14:20839728-20850189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.3067626953125	2	543.307398	1084.60024	1.1502	0.00062491	-1.9228	-0.0010446	-0.77255	-0.00041973	543.3063298392657	15.106	0.22852	15.106	14.976	15.204	0					16	9	2	0	0	0	0.61124	1	3195	3195		18.324	0.8564	1	122820			16996	10672	10508	10559	17263	17263					0.06132727474209787
HYSGHHGL	8	Unmodified	_HYSGHHGL_					0	0	0			REV__ENSG00000141337|ENST00000621439|ARSG	REV__ENSG00000141337|ENST00000621439|ARSG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2108154296875	2	454.212101	906.409649	-0.42023	-0.00019088	-1.9867	-0.00090237	-2.4069	-0.0010932	454.2113217612057	32.076	0.36931	32.076	31.969	32.338	0					16	7	3	0	0	0	0.6282	1	12145	12145		44.531	2.0566	1	990560	+		16997	15110	10509	10560	17264	17264					-0.04729978907869281
HYTIGKEII	9	Unmodified	_HYTIGKEII_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3014526367188	2	537.303124	1072.5917	0.29313	0.0001575	-4.4296	-0.00238	-4.1365	-0.0022225	537.3005634262042	13.372	0.20127	13.372	13.218	13.419	0					6	4	2	0	0	0	0.54267	1	3249	3249		27.882	2.3082	1	99258			16998	3319;10430	10510	10561	17265	17265					0.058303159943761784
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		ENST00000481170.1_1_2:220366576-220368936:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2776489257812	2	554.277106	1106.53966	0.51018	0.00028278	0.70107	0.00038859	1.2112	0.00067137	554.2774026970924	24.27	0.21358	24.27	24.163	24.377	0					10	4	3	0	0	0	0.15163	1	8484	8484		67.494	25.098	1	414090			16999	4627	10511	10562	17266	17266					-0.009348474193984657
HYWLGDVEI	9	Unmodified	_HYWLGDVEI_					0	0	0			REV__PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	REV__PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.2781982421875	2	566.277106	1130.53966	0.25396	0.00014381	1.656	0.00093775	1.91	0.0010816	566.2778655381295	27.081	0.54297	27.081	26.835	27.378	0					28	13	4	0	0	0	0.063823	1	9405	9405		73.975	8.5094	1	588560	+		17000	16389	10512	10563	17267	17267					-0.020388474193850925
IAAELKEGL	9	Unmodified	_IAAELKEGL_					0	0	0			REV__ENST00000591875.1_1_16:5110243-5115909:-|nuORF	REV__ENST00000591875.1_1_16:5110243-5115909:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2762451171875	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.67	1	30.67	30.17	31.17	0								0	0	0	0.095784	1	11489	11489		72.879	4.0924	1		+		17001	15545	10513	10564	17268	17268					0.06502938211713172
IAAFLGFW	8	Unmodified	_IAAFLGFW_					0	0	0		sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2	sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2	sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7521667480469	2	462.752539	923.490525	-0.96741	-0.00044767	0.10473	4.8465E-05	-0.86268	-0.00039921	462.75271930948384	37.592	0.24304	37.592	37.442	37.685	0					11	7	2	0	0	0	0.55232	1	14690	14690		54.895	11.269	1	36741			17002	22478	10514	10565	17269	17269					0.025719090823372426
IAAILYLPA	9	Unmodified	_IAAILYLPA_					0	0	0			REV__ENST00000529023.5_1_11:86749009-86868454:+|nuORF	REV__ENST00000529023.5_1_11:86749009-86868454:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.79290771484375	2	472.794404	943.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.385	1	24.385	23.885	24.885	0								0	0	0	0.28056	1	7457	7457		39.021	12.329	1		+		17003	16132	10515	10566	17270	17270					0.10021020459350893
IAAKKKKKK	9	Unmodified	_IAAKKKKKK_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|2|1|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|2|1|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|2|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.2541198730469	3	348.253488	1041.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.324	1	48.324	47.824	48.824	0								0	0	0	0.40224	1	19212	19212		10.265	7.7409	1				17004	11303	10516	10567	17271	17271					0.2194345766997685
IAAKTFQK	8	Unmodified	_IAAKTFQK_					0	0	0			REV__ENST00000515762.5_1_5:10442078-10461472:+|nuORF	REV__ENST00000515762.5_1_5:10442078-10461472:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.7738037109375	2	453.774003	905.533452	2.5113	0.0011396	-2.0485	-0.00092956	0.4628	0.00021001	453.77283725326964	26.679	0.21841	26.679	26.57	26.788	0					6	4	2	0	0	0	0.61938	1	9470	9470		45.952	3.4775	1	382780	+		17005	15275	10517	10568	17272	17272					0.076906791397505
IAALGGLCLI	10	Unmodified	_IAALGGLCLI_					0	0	0		nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000095539|ENST00000210633|SEMA4G	nc|ENSG00000095539|Q9NTN9|SEMA4G	nc|ENSG00000095539|Q9NTN9|SEMA4G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2853088378906	2	472.285889	942.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.613	1	38.613	38.113	39.113	0								0	0	0	0.18612	1	13016	13016		65.897	0	1				17006	1903	10518	10569	17273	17273					0.08364776581913702
IAALIGHCAL	10	Unmodified	_IAALIGHCAL_					0	0	0			REV__ENST00000270815.4_1_1:36180255-36180492:-|nuORF	REV__ENST00000270815.4_1_1:36180255-36180492:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.26116943359375	2	491.281137	980.547722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.387	1	34.387	33.887	34.887	0								0	0	0	0.27548	1	11238	11238		54.765	2.4655	1		+		17007	18099	10519	10570	17274	17274					0.05667008296381937
IAALLCTYG	9	Carbamidomethyl (C)	_IAALLC(Carbamidomethyl (C))TYG_	IAALLC(1)TYG		IAALLC(52)TYG		0	1	0			REV__CASR|p.S911Pfs*28|2|0.2|ENSG00000036828|chr3:122284680-122284680|C/-|frameshift_variant	REV__CASR|p.S911Pfs*28|2|0.2|ENSG00000036828|chr3:122284680-122284680|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2607421875	2	491.257328	980.500103	-0.7298	-0.00035852	-1.9149	-0.00094071	-2.6447	-0.0012992	491.2564174789969	34.679	0.13449	34.679	34.552	34.686	0					5	3	2	0	0	0	0.27781	1	13360	13360		52.299	7.7681	1	300840	+		17008	12335	10520	10571	17275	17275	485				0.009073093055462778
IAANKKTQS	9	Unmodified	_IAANKKTQS_					0	0	0			REV__ENSG00000144395|ENST00000389175|CCDC150	REV__ENSG00000144395|ENST00000389175|CCDC150	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.77886962890625	2	480.777274	959.539994	2.331	0.0011207	1.0182	0.00048952	3.3492	0.0016102	480.77768982689355	42.59	0.41144	42.59	42.323	42.735	0					16	11	2	0	0	0	0.35021	1	16959	16959		45.972	45.972	1	112470	+		17009	15230	10521	10572	17276	17276					0.058605723004689025
IAANLGSK	8	Unmodified	_IAANLGSK_					0	0	0			REV__tr|U7SZP6|U7SZP6_FUSNUEthanolamineutilizationproteinEutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00823PE=4SV=1	REV__tr|U7SZP6|U7SZP6_FUSNUEthanolamineutilizationproteinEutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00823PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.87554931640625	2	387.229428	772.444303	-0.65471	-0.00025352	1.1985	0.00046409	0.54376	0.00021056	387.22945357786	16.278	0.11667	16.278	16.2	16.316	0					4	2	2	0	0	0	0.76283	1	4454	4454		25.45	2.4077	1	33594	+		17010	22043	10522	10573	17277	17277					0.04897844180231914
IAANVLSKE	9	Unmodified	_IAANVLSKE_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7746887207031	2	472.7742	943.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.378	1	28.378	27.878	28.878	0								0	0	0	0.3119	1	9144	9144		32.812	0	1				17011	1411	10523	10574	17278	17278					0.059820540689429436
IAANVNPLPV	10	Unmodified	_IAANVNPLPV_					0	0	0			REV__ENST00000506450.1_1_4:25624416-25624897:+|nuORF	REV__ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53411865234375	3	336.53432	1006.58113	0.53459	0.00017991	-0.87194	-0.00029344	-0.33735	-0.00011353	336.53386848327443	38.33	0.46636	38.33	38.156	38.623	0					25	16	2	0	0	0	0.72334	1	15124	15124		12.207	0	1	207270	+		17012	14046	10524	10575	17279	17279					0.07810333339944009
IAANVNPLPV	10	Unmodified	_IAANVNPLPV_					0	0	0			REV__ENST00000506450.1_1_4:25624416-25624897:+|nuORF	REV__ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.84	1	46.84	46.34	47.34	0								0	0	0	0.4201	1	17954	17954		12.207	0	1		+		17013	14046	10524	10575	17280	17280					0.07810333339944009
IAANVNPLPV	10	Unmodified	_IAANVNPLPV_					0	0	0			REV__ENST00000506450.1_1_4:25624416-25624897:+|nuORF	REV__ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.235	1	35.235	34.735	35.735	0								0	0	0	0.4201	1	13585	13585		16.717	2.0237	1		+		17014	14046	10524	10575	17281	17281					0.07810333339944009
IAAPNMKAM	9	Unmodified	_IAAPNMKAM_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.74603271484375	2	473.746073	945.477594	-0.12158	-5.7597E-05	-0.76276	-0.00036136	-0.88434	-0.00041895	473.7455920793134	31.676	0.11286	31.676	31.572	31.685	0					4	2	2	0	0	0	0.27781	1	11960	11960		52.299	21.981	1	47598			17015	1492	10525	10576	17282	17282					0.0026738663626701964
IAASRSAVM	9	Unmodified	_IAASRSAVM_					0	0	0		ENSG00000119280|ENST00000366663|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2471618652344	2	453.247295	904.480036	-1.1965	-0.00054232	0.82745	0.00037504	-0.36907	-0.00016728	453.24770280242456	23.49	0.12498	23.49	23.424	23.549	0					10	4	3	0	0	0	0.42902	1	7061	7061		39.253	7.723	1	131880			17016	3104	10526	10577	17283	17283					0.023975583655897026
IAASRSAVM	9	Unmodified	_IAASRSAVM_					0	0	0		ENSG00000119280|ENST00000366663|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2474060058594	2	453.247295	904.480036	0.87711	0.00039755	-4.4723	-0.002027	-3.5952	-0.0016295	453.2457872571312	23.675	0.41287	23.675	23.568	23.981	0					15	8	2	0	0	0	0.16806	1	8069	8069		65.465	13.166	1	2150700			17017	3104	10526	10577	17284	17284					0.023975583655897026
IACAEAYLK	9	Unmodified	_IACAEAYLK_					0	0	0			REV__ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant	REV__ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.256591796875	2	491.257328	980.500103	0.58529	0.00028753	-1.5602	-0.00076646	-0.97492	-0.00047894	491.2564896816074	51.914	0.27175	51.914	51.803	52.075	0					35	16	3	0	0	0	0.60749	1	19208	19208		20.947	1.587	1	374960	+		17018	14803	10527	10578	17285	17285					0.009073093055235404
IADAAYKAM	9	Unmodified	_IADAAYKAM_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2413024902344	2	477.241678	952.468803	0.38874	0.00018553	-1.2576	-0.00060019	-0.86888	-0.00041466	477.240854655544	28.567	0.37067	28.567	28.486	28.857	0					12	9	2	0	0	0	0.078509	1	10120	10120		85.161	31.809	1	443170			17019	6618	10528	10579	17286	17286					-0.009332637285638157
IADAAYKAM	9	Unmodified	_IADAAYKAM_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.24169921875	2	477.241678	952.468803	-1.4941	-0.00071306	1.6013	0.00076419	0.10714	5.1132E-05	477.2424444917759	28.347	0.12225	28.347	28.262	28.384	0					10	4	3	0	0	0	0.087861	1	9140	9140		82.241	26.736	1	90992			17020	6618	10528	10579	17287	17287					-0.009332637285638157
IADAAYKAM	9	Unmodified	_IADAAYKAM_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2414855957031	2	477.241678	952.468803	-0.34515	-0.00016472	-0.1775	-8.4709E-05	-0.52264	-0.00024943	477.24145338576454	28.366	0.12773	28.366	28.325	28.453	0					5	3	2	0	0	0	0.056004	1	9415	9415		93.143	31.036	1	113130			17021	6618	10528	10579	17288	17288					-0.009332637285638157
IADAAYKAM	9	Unmodified	_IADAAYKAM_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.24114990234375	2	477.241678	952.468803	-0.64311	-0.00030692	-2.2073	-0.0010534	-2.8504	-0.0013603	477.24143361989996	28.589	0.36606	28.589	28.409	28.775	0					21	7	4	0	0	0	0.056004	1	10353	10353		93.143	39.792	1	360660			17022	6618	10528	10579	17289	17289					-0.009332637285638157
IADAAYKAM	9	Unmodified	_IADAAYKAM_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2416076660156	2	477.241678	952.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.577	1	28.577	28.077	29.077	0								0	0	0	0.024201	1	10370	10370		98.629	27.334	1				17023	6618	10528	10579	17290	17290					-0.009332637285638157
IADADATVK	9	Unmodified	_IADADATVK_					0	0	0		LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant;LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2	LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant	LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.24713134765625	2	452.242732	902.470912	-0.02044	-9.2439E-06	-0.13609	-6.1545E-05	-0.15653	-7.0789E-05	452.24259728543876	23.555	0.53299	23.555	23.372	23.905	0					54	19	4	0	0	0	0.45358	1	6780	6780		37.159	0	1	2435100			17024	7379	10529	10580	17291	17291					0.015774882808955226
IADATNKDI	9	Unmodified	_IADATNKDI_					0	0	0			REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF	REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7530517578125	2	480.753464	959.492375	-0.51692	-0.00024851	0.97478	0.00046863	0.45786	0.00022012	480.753347018567	22.443	0.21661	22.443	22.334	22.55	0					9	4	3	0	0	0	0.10915	1	7610	7610		77.318	0.54344	1	259910	+		17025	14701	10530	10581	17292	17292					0.011008733096218748
IADEFQAQL	9	Unmodified	_IADEFQAQL_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.76025390625	2	517.761289	1033.50803	0.90873	0.00047051	-2.8521	-0.0014767	-1.9434	-0.0010062	517.7598404474721	20.526	0.13525	20.526	20.434	20.569	0					6	3	2	0	0	0	0.39215	1	5799	5799		42.396	0	1	83102	+		17026	17628	10531	10582	17293	17293					-0.007388401733351202
IADIFVKKG	9	Unmodified	_IADIFVKKG_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.80267333984375	2	495.80276	989.590967	-0.037878	-1.878E-05	0.10758	5.3336E-05	0.069698	3.4557E-05	495.8028156055637	33.375	0.14834	33.375	33.269	33.418	0					6	3	2	0	0	0	0.26904	1	12775	12775		53.351	5.4358	1	50593			17027	6797	10532	10583	17294	17294					0.09575521345323068
IADPFLVAI	9	Unmodified	_IADPFLVAI_					0	0	0		ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant;ENST00000563623.5_1_16:2339371-2378589:-|nuORF;ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant;ENSG00000167972|ENST00000301732|ABCA3	ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant	ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7812805175781	2	479.784036	957.553519	-2.9265	-0.0014041	-2.6866	-0.001289	-5.6131	-0.0026931	479.78320590492433	32.138	0.39874	32.138	32.018	32.417	0					16	11	3	0	0	0	0.23186	1	11140	11140		57.811	1.0902	1	103140			17028	6	10533	10584	17295	17295					0.07304430079705071
IADPSSKTL	9	Unmodified	_IADPSSKTL_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2579650878906	2	466.258382	930.502212	-0.43797	-0.00020421	-0.31564	-0.00014717	-0.75361	-0.00035137	466.25823359094045	25.118	0.27967	25.118	24.946	25.226	0					14	8	2	0	0	0	0.41958	1	7506	7506		40.058	4.4399	1	105610			17029	594	10534	10585	17296	17296					0.03418061315016985
IADPSSKTL	9	Unmodified	_IADPSSKTL_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2581481933594	2	466.258382	930.502212	-0.66871	-0.00031179	-0.28754	-0.00013407	-0.95625	-0.00044586	466.25834510200673	25.413	0.65353	25.413	25.091	25.744	0					33	15	4	0	0	0	0.012231	1	8670	8670		136.27	51.353	1	637610			17030	594	10534	10585	17297	17297					0.03418061315016985
IADPSSKTL	9	Unmodified	_IADPSSKTL_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.25860595703125	2	466.258382	930.502212	-0.91201	-0.00042523	0.38397	0.00017903	-0.52804	-0.0002462	466.2586688164891	25.192	0.25902	25.192	25.03	25.289	0					15	8	2	0	0	0	0.15163	1	7785	7785		67.494	1.0644	1	177320			17031	594	10534	10585	17298	17298					0.03418061315016985
IADPSSKTL	9	Unmodified	_IADPSSKTL_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2580261230469	2	466.258382	930.502212	0.66365	0.00030943	-1.2917	-0.00060226	-0.62804	-0.00029283	466.25790230842057	25.401	0.36406	25.401	25.188	25.552	0					20	7	4	0	0	0	0.12834	1	9023	9023		72.879	11.907	1	559760			17032	594	10534	10585	17299	17299					0.03418061315016985
IADPSSKTL	9	Unmodified	_IADPSSKTL_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2583312988281	2	466.258382	930.502212	-1.185	-0.00055253	1.0861	0.0005064	-0.098935	-4.6129E-05	466.25878662845315	25.433	0.21952	25.433	25.222	25.442	0					8	4	2	0	0	0	0.18416	1	9012	9012		63.534	6.8128	1	186410			17033	594	10534	10585	17300	17300					0.03418061315016985
IADSGKYIK	9	Unmodified	_IADSGKYIK_					0	0	0		nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;nc|ENSG00000159593|Q13564-3|NAE1	nc|ENSG00000159593|Q13564-2|NAE1	nc|ENSG00000159593|Q13564-2|NAE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.78173828125	2	497.782025	993.549496	-0.27571	-0.00013724	-0.5343	-0.00026597	-0.81002	-0.00040321	497.78203901939	23.445	0.7969	23.445	23.035	23.832	0					49	18	5	0	0	0	0.13267	1	7709	7709		71.877	11.759	1	722840			17034	5323	10535	10586	17301	17301					0.05246340585995313
IAEAFCSAL	9	Carbamidomethyl (C)	_IAEAFC(Carbamidomethyl (C))SAL_	IAEAFC(1)SAL		IAEAFC(51)SAL		0	1	0		ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2380065917969	2	491.239135	980.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.585	1	45.585	45.085	46.085	0								0	0	0	0.19749	1	18261	18261		51.335	7.2187	1				17035	3442	10536	10587	17302	17302	141				-0.027295675911773287
IAECTFTKMR	10	Unmodified	_IAECTFTKMR_					0	0	0		nc|ENSG00000164932|Q96CG8-3|CTHRC1;nc|ENSG00000164932|Q96CG8-2|CTHRC1;ENSG00000164932|ENST00000330295|CTHRC1	nc|ENSG00000164932|Q96CG8-3|CTHRC1	nc|ENSG00000164932|Q96CG8-3|CTHRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	600.8020629882812	2	600.299201	1198.58385	-0.57674	-0.00034622	1.3827	0.00083005	0.80599	0.00048384	600.2996269949157	31.141	0.22261	31.141	31.059	31.282	0					12	8	2	0	0	0	0.59277	1	10286	10286		35.152	9.578	1	94518			17036	5742	10537	10588	17303	17303					-0.007499025890638222
IAEEQQRIL	9	Unmodified	_IAEEQQRIL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.3097534179688	2	550.308938	1098.60332	0.32386	0.00017822	1.3448	0.00074004	1.6686	0.00091826	550.3098862378907	30.208	0.086452	30.208	30.166	30.252	0					6	3	2	0	0	0	0.24334	1	9898	9898		56.434	15.656	1	51554			17037	1881	10538	10589	17304	17304					0.05796513017708094
IAEEQQRIL	9	Unmodified	_IAEEQQRIL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3089599609375	2	550.308938	1098.60332	-1.4252	-0.00078432	2.6703	0.0014695	1.2451	0.00068516	550.3104027310598	30.216	0.15669	30.216	30.133	30.29	0					7	4	2	0	0	0	0.36892	1	10269	10269		44.377	5.6236	1	80270			17038	1881	10538	10589	17305	17305					0.05796513017708094
IAEEQQRIL	9	Unmodified	_IAEEQQRIL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3094482421875	2	550.308938	1098.60332	1.8156	0.00099916	-1.4056	-0.00077353	0.41	0.00022562	550.3081267969832	30.385	0.21266	30.385	30.277	30.49	0					9	4	3	0	0	0	0.18416	1	11257	11257		63.534	15.618	1	288060			17039	1881	10538	10589	17306	17306					0.05796513017708094
IAEIGEEKF	9	Unmodified	_IAEIGEEKF_					0	0	0			REV__tr|U7SWE1|U7SWE1_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00996PE=4SV=1	REV__tr|U7SWE1|U7SWE1_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00996PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2720947265625	2	518.27149	1034.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.102	1	44.102	43.602	44.602	0								0	0	0	0.19749	1	17673	17673		51.335	7.2187	1		+		17040	22002	10539	10590	17307	17307					0.012543304864720994
IAELGSLSLPA	11	Unmodified	_IAELGSLSLPA_					0	0	0			REV__B2M|p.L12P|1|0.17|ENSG00000166710|chr15:44711581-44711581|T/C|missense_variant	REV__B2M|p.L12P|1|0.17|ENSG00000166710|chr15:44711581-44711581|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.5404357910156	3	357.541252	1069.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.101	1	23.101	22.601	23.601	0								0	0	0	0.45344	1	6633	6633		25.126	0.6068	1		+		17041	12267	10540	10591	17308	17308					0.06990878928968414
IAELNANLS	9	Unmodified	_IAELNANLS_					0	0	0		DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76450753-76471822:-|nuORF	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7557373046875	2	472.756007	943.497461	0.5917	0.00027973	-0.81941	-0.00038738	-0.22771	-0.00010765	472.75541410570173	38.71	0.27486	38.71	38.623	38.897	0					21	10	3	0	0	0	0.16806	1	15223	15223		65.465	3.358	1	475040			17042	814	10541	10592	17309	17309					0.023451771722420744
IAELNANLS	9	Unmodified	_IAELNANLS_					0	0	0		DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76450753-76471822:-|nuORF	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7557067871094	2	472.756007	943.497461	2.422	0.001145	-1.897	-0.00089684	0.52499	0.00024819	472.75447443428845	38.671	0.45503	38.671	38.56	39.015	0					21	9	4	0	0	0	0.11898	1	15234	15234		75.043	0	1	335630			17043	814	10541	10592	17310	17310					0.023451771722420744
IAENIYGVAV	10	Unmodified	_IAENIYGVAV_					0	0	0			REV__IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant	REV__IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7888793945312	2	524.787307	1047.56006	1.4206	0.00074553	0.098309	5.1591E-05	1.5189	0.00079712	524.7872324873492	40.173	0.16269	40.173	40.105	40.268	0					14	9	2	0	0	0	0.67098	1	12995	12995		25.574	4.6271	1	106010	+		17044	15281	10542	10593	17311	17311					0.038183232404207956
IAEREGPSP	9	Unmodified	_IAEREGPSP_					0	0	0			REV__ENST00000542568.1_1_12:121017123-121017228:-|nuORF	REV__ENST00000542568.1_1_12:121017123-121017228:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.24603271484375	2	478.245806	954.47706	-0.053553	-2.5612E-05	-0.65652	-0.00031398	-0.71008	-0.00033959	478.2456556715165	29.19	0.25517	29.19	29.061	29.316	0					18	9	3	0	0	0	0.38666	1	9178	9178		42.864	5.0528	1	197780	+		17045	20147	10543	10594	17312	17312					-0.001999934875584586
IAERQKGLQ	9	Unmodified	_IAERQKGLQ_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.8040771484375	2	521.803823	1041.59309	0.37373	0.00019501	0.55544	0.00028983	0.92917	0.00048484	521.8040390526767	20.061	0.12423	20.061	20.004	20.128	0					10	4	3	0	0	0	0.47038	1	5536	5536		35.618	1.4457	1	300510			17046	6079	10544	10595	17313	17313					0.07395950083150638
IAERQTAL	8	Unmodified	_IAERQTAL_					0	0	0			REV__CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	REV__CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2582092285156	2	451.258717	900.50288	-0.00012322	-5.5604E-08	-0.73636	-0.00033229	-0.73648	-0.00033234	451.2584128661403	29.186	0.22628	29.186	29.097	29.323	0					22	8	3	0	0	0	0.37378	1	9173	9173		73.975	8.1716	1	504570	+		17047	12430	10545	10596	17314	17314					0.0486490075469419
IAEVAAAVVA	10	Unmodified	_IAEVAAAVVA_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2708435058594	2	457.271293	912.528032	-0.39536	-0.00018079	-0.57388	-0.00026242	-0.96924	-0.0004432	457.27106859839597	28.87	0.31701	28.87	28.78	29.097	0					17	11	2	0	0	0	0.40673	1	9050	9050		55.504	9.532	1	111400			17048	3040	10546	10597	17315	17315					0.06826955557278325
IAFPITTI	8	Unmodified	_IAFPITTI_					0	0	0		tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.263671875	2	438.265479	874.516405	-3.1045	-0.0013606	-1.4603	-0.00064002	-4.5648	-0.0020006	438.2647760699711	27.125	0.12289	27.125	27.041	27.164	0					7	3	3	0	0	0	0.67475	1	8838	8838		37.028	5.4987	1	120770			17049	22816	10547	10598	17316	17316					0.07412758533939723
IAFQGSKSV	9	Unmodified	_IAFQGSKSV_					0	0	0			REV__ENST00000559897.1_1_15:64263709-64322004:-|nuORF	REV__ENST00000559897.1_1_15:64263709-64322004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7607421875	2	468.761092	935.507631	0.02565	1.2024E-05	-0.29777	-0.00013958	-0.27212	-0.00012756	468.7608847086707	29.522	0.2319	29.522	29.421	29.653	0					12	7	3	0	0	0	0.26904	1	9323	9323		53.351	2.016	1	330220	+		17050	20279	10548	10599	17317	17317					0.03729784897484478
IAFWLQWF	8	Unmodified	_IAFWLQWF_					0	0	0		nc|ENSG00000134489|Q9H3N8-2|HRH4;ENSG00000134489|ENST00000256906|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	370.8636169433594	3	370.863889	1109.56984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.604	1	29.604	29.104	30.104	0								0	0	0	1.7419	1	10981	10981		25.45	0.93098	1				17051	3922	10549	10600	17318	17318					0.019435560364399862
IAGAKGKPGP	10	Unmodified	_IAGAKGKPGP_					0	0	0			REV__ENSG00000145861|ENST00000652664|C1QTNF2	REV__ENSG00000145861|ENST00000652664|C1QTNF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2710266113281	2	448.271627	894.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.107	1	31.107	30.607	31.607	0								0	0	0	0.40446	1	10673	10673		29.15	2.3535	1		+		17052	15292	10550	10601	17319	17319					0.07721794997007692
IAGAMRTLQI	10	Unmodified	_IAGAMRTLQI_					0	0	0			REV__TP53I3|p.E195Rfs*5|1|0.44|ENSG00000115129|chr2:24080855-24080856|-/T|frameshift_variant	REV__TP53I3|p.E195Rfs*5|1|0.44|ENSG00000115129|chr2:24080855-24080856|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.54473876953125	3	358.54271	1072.6063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.024	1	27.024	26.524	27.524	0								0	0	0	0.11831	1	9624	9624		76.17	14.062	1		+		17053	14098	10551	10602	17320	17320					0.07290064870880997
IAGEGITVN	9	Unmodified	_IAGEGITVN_					0	0	0			REV__tr|U7T3R9|U7T3R9_FUSNUUDP-3-O-acylglucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxDPE=3SV=1	REV__tr|U7T3R9|U7T3R9_FUSNUUDP-3-O-acylglucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxDPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2378234863281	2	437.23745	872.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.314	1	35.314	34.814	35.814	0								0	0	0	0.28996	1	12573	12573		37.159	1.5408	1		+		17054	22148	10552	10603	17321	17321					0.019015056264720442
IAGGTGITILI	11	Unmodified	_IAGGTGITILI_					0	0	0		ENST00000440896.2_1_11:59856214-59861079:+|nuORF;ENSG00000149534|ENST00000278888|MS4A2	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.8204956054688	2	514.82115	1027.62775	1.3804	0.00071065	-3.2846	-0.001691	-1.9042	-0.00098032	514.819923767505	41.825	0.09642	41.825	41.783	41.879	0					7	4	2	0	0	0	0.58789	1	16435	16435		37.812	0.78304	1	84654			17055	4892	10553	10604	17322	17322					0.11503773171239118
IAGLGHHHQL	10	Unmodified	_IAGLGHHHQL_					0	0	0			REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF	REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7963256835938	2	541.796332	1081.57811	1.0533	0.0005707	-0.76835	-0.00041629	0.285	0.00015441	541.7956345282411	27.418	0.17284	27.418	27.333	27.505	0					6	4	2	0	0	0	0.2897	1	8962	8962		68.485	0.99103	1	63571	+		17056	18952	10554	10605	17323	17323					0.040585030057854965
IAGLTNYL	8	Unmodified	_IAGLTNYL_					0	0	0			REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.7447509765625	2	432.744911	863.475269	0.73396	0.00031762	-1.0488	-0.00045387	-0.31484	-0.00013625	432.74432660461974	37.192	0.16433	37.192	37.104	37.268	0					6	4	2	0	0	0	0.5676	1	14093	14093		53.351	2.016	1	54930	+		17057	21869	10555	10606	17324	17324					0.03806997494461939
IAGSPNWTP	9	Unmodified	_IAGSPNWTP_					0	0	0		ENST00000604104.1_1_9:98268979-98269411:+|nuORF	ENST00000604104.1_1_9:98268979-98269411:+|nuORF	ENST00000604104.1_1_9:98268979-98269411:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7374267578125	2	471.737617	941.460681	-0.5578	-0.00026313	0.60052	0.00028329	0.042725	2.0155E-05	471.7378865275144	30.789	0.51033	30.789	30.68	31.19	0					12	10	2	0	0	0	0.22377	1	11448	11448		58.782	8.7574	1	358290			17058	11060	10556	10607	17325	17325					-0.012390746536766528
IAGSYNNSMF	10	Unmodified	_IAGSYNNSMF_					0	0	0		ENST00000555392.1_1_14:74423051-74423234:+|nuORF	ENST00000555392.1_1_14:74423051-74423234:+|nuORF	ENST00000555392.1_1_14:74423051-74423234:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2459106445312	2	552.244949	1102.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.161	1	45.161	44.661	45.661	0								0	0	0	0.37602	1	17504	17504		37.812	6.2817	1				17059	10658	10557	10608	17326	17326					-0.07179370567837395
IAGVTHLLP	9	Unmodified	_IAGVTHLLP_					0	0	0		CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;CPEB2|p.C544Vfs*31|5|0.34|ENSG00000137449|chr4:15066234-15066234|T/-|frameshift_variant;ENSG00000137449|ENST00000538197|CPEB2	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7815856933594	2	460.781828	919.549102	-0.69783	-0.00032155	0.11672	5.3783E-05	-0.58111	-0.00026777	460.78193338465945	33.097	1.2885	33.097	32.127	33.415	0					64	33	3	0	0	0	0.41354	1	12075	12075		40.573	3.4135	1	285260			17060	681	10558	10609	17327	17327					0.08610965656805547
IAGVTHLLP	9	Unmodified	_IAGVTHLLP_					0	0	0		CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;CPEB2|p.C544Vfs*31|5|0.34|ENSG00000137449|chr4:15066234-15066234|T/-|frameshift_variant;ENSG00000137449|ENST00000538197|CPEB2	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.7813415527344	2	460.781828	919.549102	-0.87071	-0.00040121	0.18657	8.5966E-05	-0.68414	-0.00031524	460.78189025586295	32.933	0.98491	32.933	32.231	33.216	0					54	40	2	0	0	0	0.39123	1	11007	11007		42.474	3.6683	1	100150			17061	681	10558	10609	17328	17328					0.08610965656805547
IAHISTIIK	9	Unmodified	_IAHISTIIK_					0	0	0			REV__OR7A5|p.S223T|1|0.42|ENSG00000188269|chr19:14827575-14827575|A/T|missense_variant	REV__OR7A5|p.S223T|1|0.42|ENSG00000188269|chr19:14827575-14827575|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.3159484863281	2	498.316035	994.617516	-0.25436	-0.00012675	0.12228	6.0936E-05	-0.13208	-6.5818E-05	498.3161624566555	31.165	0.22225	31.165	31.069	31.291	0					13	5	3	0	0	0	0.33044	1	11323	11323		47.657	3.5405	1	473090	+		17062	21325	10559	10610	17329	17329					0.11999210236672297
IAIDGGKVL	9	Unmodified	_IAIDGGKVL_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;USPL1|p.N138S|1|0.29|ENSG00000132952|chr13:30631019-30631019|A/G|missense_variant	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2734069824219	2	443.273835	884.533118	0.58158	0.0002578	-1.4441	-0.00064013	-0.86251	-0.00038233	443.2732066752175	36.487	0.22815	36.487	36.38	36.608	0					14	6	3	0	0	0	0.087861	1	13764	13764		82.241	5.3939	1	180460			17063	3825	10560	10611	17330	17330					0.08623259419891838
IAIDGGKVL	9	Unmodified	_IAIDGGKVL_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;USPL1|p.N138S|1|0.29|ENSG00000132952|chr13:30631019-30631019|A/G|missense_variant	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2738952636719	2	443.273835	884.533118	0.51733	0.00022932	0.19302	8.556E-05	0.71034	0.00031488	443.27401436030203	36.493	0.22435	36.493	36.385	36.61	0					15	6	3	0	0	0	0.12239	1	14229	14229		74.255	6.9278	1	310810			17064	3825	10560	10611	17331	17331					0.08623259419891838
IAIDGGKVL	9	Unmodified	_IAIDGGKVL_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;USPL1|p.N138S|1|0.29|ENSG00000132952|chr13:30631019-30631019|A/G|missense_variant	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2735595703125	2	443.273835	884.533118	-0.49682	-0.00022023	-0.35588	-0.00015775	-0.85271	-0.00037798	443.273587105448	36.391	0.16681	36.391	36.329	36.496	0					8	3	3	0	0	0	0.025517	1	14149	14149		113.41	14.037	1	175410			17065	3825	10560	10611	17332	17332					0.08623259419891838
IAIDGGKVL	9	Unmodified	_IAIDGGKVL_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;USPL1|p.N138S|1|0.29|ENSG00000132952|chr13:30631019-30631019|A/G|missense_variant	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2737121582031	2	443.273835	884.533118	0.76351	0.00033844	-1.309	-0.00058027	-0.54554	-0.00024182	443.27326258592154	36.419	0.26651	36.419	36.313	36.579	0					11	5	3	0	0	0	0.063823	1	14162	14162		90.37	5.4543	1	380200			17066	3825	10560	10611	17333	17333					0.08623259419891838
IAIDKVVQ	8	Unmodified	_IAIDKVVQ_					0	0	0		nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7	nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-5|TUT7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2735900878906	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.334	1	36.334	35.834	36.834	0								0	0	0	1.7419	1	13003	13003		35.618	2.1027	1				17067	1691	10561	10612	17334	17334					0.08623259419903206
IAIDNAINY	9	Unmodified	_IAIDNAINY_					0	0	0		tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.7664489746094	2	503.763832	1005.51311	3.6159	0.0018216	0.89703	0.00045189	4.513	0.0022735	503.76460532166357	27.174	0.10623	27.174	27.108	27.214	0					6	3	2	0	0	0	0.26904	1	8640	8640		53.351	9.2347	1	60470			17068	22742	10562	10613	17335	17335					0.010574636892783928
IAIGSQPVL	9	Unmodified	_IAIGSQPVL_					0	0	0		ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.27362060546875	2	449.273835	896.533118	0.65502	0.00029428	-1.1391	-0.00051176	-0.48406	-0.00021748	449.2735396734112	44.51	0.086594	44.51	44.436	44.523	0					5	4	2	0	0	0	0.25716	1	17321	17321		54.776	8.8244	1	49966			17069	1429	10563	10614	17336	17336					0.08071259419898524
IAIGSQPVL	9	Unmodified	_IAIGSQPVL_					0	0	0		ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.2742919921875	2	449.273835	896.533118	-0.39598	-0.0001779	0.70247	0.0003156	0.30649	0.0001377	449.2742212025765	44.494	0.24148	44.494	44.436	44.677	0					16	9	2	0	0	0	0.15163	1	17820	17820		67.494	8.7117	1	86291			17070	1429	10563	10614	17337	17337					0.08071259419898524
IAIGSQPVL	9	Unmodified	_IAIGSQPVL_					0	0	0		ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.27386474609375	2	449.273835	896.533118	0.87499	0.00039311	-1.2998	-0.00058398	-0.42485	-0.00019087	449.27321557782994	44.532	0.24125	44.532	44.403	44.644	0					18	9	2	0	0	0	0.22837	1	17806	17806		58.23	12.258	1	212050			17071	1429	10563	10614	17338	17338					0.08071259419898524
IAIKQTPEL	9	Unmodified	_IAIKQTPEL_					0	0	0		ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant;ENSG00000134028|ENST00000256412|ADAMDEC1	ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant	ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.8056640625	2	506.8055	1011.59645	-0.36546	-0.00018522	0.16905	8.5675E-05	-0.19642	-9.9544E-05	506.80566756518596	33.363	0.31402	33.363	33.165	33.479	0					12	7	2	0	0	0	0.040209	1	12742	12742		104.06	27.283	1	204540			17072	56	10564	10615	17339	17339					0.09111200137124342
IAIQLDLVQ	9	Unmodified	_IAIQLDLVQ_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1	REV__nc|ENSG00000141458|O15118-2|NPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.805419921875	2	506.8055	1011.59645	-0.037	-1.8752E-05	-0.3785	-0.00019183	-0.4155	-0.00021058	506.80522061563073	33.365	0.28281	33.365	33.173	33.456	0					17	7	3	0	0	0	0.085655	1	12326	12326		66.429	0	1	331610	+		17073	15118	10565	10616	17340	17340					0.09111200137135711
IAISKPLHY	9	Unmodified	_IAISKPLHY_					0	0	0		ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.3087158203125	2	521.30821	1040.60187	1.5091	0.00078669	-1.2792	-0.00066684	0.2299	0.00011985	521.3073993856633	40.704	0.49318	40.704	40.477	40.971	0					29	17	2	0	0	0	0.48389	1	15522	15522		34.173	1.3601	1	122800			17074	6379	10566	10617	17341	17341					0.08318923719616578
IAISRTPVL	9	Unmodified	_IAISRTPVL_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.3082580566406	2	485.30821	968.601866	-0.24787	-0.00012029	0.03071	1.4904E-05	-0.21716	-0.00010539	485.3082000215031	36.973	0.48135	36.973	36.776	37.257	0					33	13	4	0	0	0	0.063171	1	13940	13940		90.601	15.558	1	1289300			17075	5819	10567	10618	17342	17342					0.11630923719599195
IAISRTPVL	9	Unmodified	_IAISRTPVL_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.30859375	2	485.30821	968.601866	-0.65833	-0.00031949	0.38558	0.00018712	-0.27276	-0.00013237	485.3083926924583	36.958	0.36711	36.958	36.788	37.155	0					32	11	4	0	0	0	0.30841	1	14375	14375		49.536	7.1399	1	1107100			17076	5819	10567	10618	17343	17343					0.11630923719599195
IAIVPDGKYGA	11	Unmodified	_IAIVPDGKYGA_					0	0	0		ENSG00000152578|ENST00000282499|GRIA4	ENSG00000152578|ENST00000282499|GRIA4	ENSG00000152578|ENST00000282499|GRIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.3075561523438	2	552.308406	1102.60226	1.1456	0.00063271	-0.1925	-0.00010632	0.95308	0.00052639	552.3082314847745	30.692	0.48887	30.692	30.386	30.875	0					32	13	3	0	0	0	0.53842	1	10393	10393		41.427	9.7923	1	279740			17077	5018	10568	10619	17344	17344					0.055062986488110255
IAKELELE	8	Unmodified	_IAKELELE_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7682189941406	2	472.768583	943.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.119	1	35.119	34.619	35.619	0								0	0	0	1.7419	1	13529	13529		68.787	0	1				17078	7849	10569	10620	17345	17345					0.048592319748081536
IAKEQANQI	9	Unmodified	_IAKEQANQI_					0	0	0			REV__ENST00000400566.5_1_21:15893501-15918613:-|nuORF	REV__ENST00000400566.5_1_21:15893501-15918613:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7825927734375	2	507.782556	1013.55056	-0.6119	-0.00031071	-0.62378	-0.00031674	-1.2357	-0.00062745	507.782507745225	34.522	0.14618	34.522	34.473	34.619	0					10	6	2	0	0	0	0.44593	1	11654	11654		37.812	1.3648	1	42654	+		17079	18945	10570	10621	17346	17346					0.04432554954905754
IAKFSTPPA	9	Unmodified	_IAKFSTPPA_					0	0	0		MYBL1|p.E593Rfs*14|1|0.3|ENSG00000185697|chr8:66566944-66566945|-/T|frameshift_variant;nc|ENSG00000185697|P10243-2|MYBL1;ENSG00000185697|ENST00000522677|MYBL1	MYBL1|p.E593Rfs*14|1|0.3|ENSG00000185697|chr8:66566944-66566945|-/T|frameshift_variant	MYBL1|p.E593Rfs*14|1|0.3|ENSG00000185697|chr8:66566944-66566945|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.26397705078125	2	466.26601	930.517468	-2.2617	-0.0010546	-3.4988	-0.0016314	-5.7605	-0.0026859	466.26483466796316	27.087	0.1625	27.087	26.928	27.09	0					5	4	2	0	0	0	0.22377	1	8808	8808		58.782	7.4465	1	47607			17080	7098	10571	10622	17347	17347					0.04942972902847487
IAKGGAAL	8	Unmodified	_IAKGGAAL_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.72119140625	2	350.721239	699.427924	0.41393	0.00014517	-0.24633	-8.6392E-05	0.16761	5.8783E-05	350.72103810434646	20.13	0.11053	20.13	20.069	20.179	0					5	3	2	0	0	0	0.4434	1	5336	5336		65.897	2.919	1	56557			17081	2285	10572	10623	17348	17348					0.0661876301413713
IAKGGAAL	8	Unmodified	_IAKGGAAL_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.72119140625	2	350.721239	699.427924	0.70064	0.00024573	-0.88277	-0.00030961	-0.18213	-6.3877E-05	350.7209333788777	20.485	0.19013	20.485	20.387	20.577	0					8	4	3	0	0	0	0.25916	1	6375	6375		96.048	9.1131	1	530810			17082	2285	10572	10623	17349	17349					0.0661876301413713
IAKGGAAL	8	Unmodified	_IAKGGAAL_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.7210693359375	2	350.721239	699.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.252	1	20.252	19.752	20.752	0								0	0	0	1.7419	1	5659	5659		42.474	3.453	1				17083	2285	10572	10623	17350	17350					0.0661876301413713
IAKGGAAL	8	Unmodified	_IAKGGAAL_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.7212219238281	2	350.721239	699.427924	-0.045699	-1.6027E-05	0.15758	5.5265E-05	0.11188	3.9238E-05	350.72126998472623	20.402	0.21749	20.402	20.294	20.511	0					9	4	3	0	0	0	0.28675	1	6484	6484		86.935	12.418	1	314380			17084	2285	10572	10623	17351	17351					0.0661876301413713
IAKHSPSSVK	10	Unmodified	_IAKHSPSSVK_					0	0	0			REV__ENST00000409320.7_1_2:101622422-101622563:+|nuORF	REV__ENST00000409320.7_1_2:101622422-101622563:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.8073120117188	2	527.306198	1052.59784	-1.2016	-0.00063364	1.6346	0.00086194	0.43296	0.0002283	527.8082327304263	27.572	0.13294	27.572	27.483	27.616	0					6	3	2	0	0	0	0.63224	1	9046	9046		30.318	2.4355	1	119410	+		17085	18996	10573	10624	17352	17352					0.07364834225904815
IAKKAEEY	8	Unmodified	_IAKKAEEY_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2607421875	2	476.260925	950.507297	-0.6231	-0.00029676	-0.25896	-0.00012333	-0.88206	-0.00042009	476.26072660141676	29.068	0.31562	29.068	28.959	29.274	0					10	6	2	0	0	0	0.49216	1	10595	10595		60.972	7.6205	1	385150	+		17086	15048	10574	10625	17353	17353					0.030063651776117695
IALALDAPR	9	Unmodified	_IALALDAPR_					0	0	0			REV__TM6SF2|p.V222A|1|0.4|ENSG00000213996|chr19:19268032-19268032|A/G|missense_variant	REV__TM6SF2|p.V222A|1|0.4|ENSG00000213996|chr19:19268032-19268032|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.28466796875	2	470.284734	938.554916	-0.43052	-0.00020247	-0.3152	-0.00014823	-0.74572	-0.0003507	470.2845800680575	22.277	0.15018	22.277	22.207	22.357	0					7	4	2	0	0	0	0.21116	1	6263	6263		60.294	0	1	248700	+		17087	21646	10575	10626	17354	17354					0.08318064168474848
IALAVVGGAL	10	Unmodified	_IALAVVGGAL_					0	0	0			REV__ENSG00000249581|ENST00000511148|CLRN2	REV__ENSG00000249581|ENST00000511148|CLRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2898864746094	2	442.284203	882.553853	-0.52633	-0.00023279	0.93885	0.00041524	0.41252	0.00018245	442.2847902660376	33.352	0.54268	33.352	33.147	33.689	0					33	15	3	0	0	0	0.41345	1	11841	11841		54.765	10.234	1	385760	+		17088	17724	10576	10627	17355	17355					0.10787849799578453
IALDAILLN	9	Unmodified	_IALDAILLN_					0	0	0			REV__PROKR1|p.N103D|1|0.45|ENSG00000169618|chr2:68646128-68646128|A/G|missense_variant	REV__PROKR1|p.N103D|1|0.45|ENSG00000169618|chr2:68646128-68646128|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.29437255859375	2	478.294768	954.574983	-0.65308	-0.00031237	0.40156	0.00019206	-0.25153	-0.0001203	478.2949147233232	39.535	0.41337	39.535	39.438	39.852	0					18	9	2	0	0	0	0.087582	1	15622	15622		82.305	2.5924	1	488320	+		17089	21415	10577	10628	17356	17356					0.09587815108420727
IALEAAKAL	9	Unmodified	_IALEAAKAL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.28106689453125	2	450.28166	898.548768	0.63287	0.00028497	-1.3563	-0.00061072	-0.72343	-0.00032575	450.2810431949526	36.327	0.18117	36.327	36.211	36.392	0					8	5	2	0	0	0	0.098791	1	13670	13670		79.713	0.26157	1	126240			17090	3256	10578	10629	17357	17357					0.09543545936935516
IALFNIAF	8	Unmodified	_IALFNIAF_					0	0	0		tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.76300048828125	2	454.765646	907.516739	-2.6271	-0.0011947	-1.3228	-0.00060155	-3.9499	-0.0017963	454.76486669966795	33.168	0.10654	33.168	33.111	33.218	0					5	3	2	0	0	0	0.78146	1	11624	11624		23.037	0	1	40060			17091	22937	10579	10630	17358	17358					0.05928178253793703
IALGGASPGNP	11	Unmodified	_IALGGASPGNP_					0	0	0			REV__nc|ENSG00000130669|O96013-3|PAK4	REV__nc|ENSG00000130669|O96013-3|PAK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2559509277344	2	477.256174	952.497795	-0.40379	-0.00019271	-0.64494	-0.0003078	-1.0487	-0.00050051	477.2558814406374	33.087	0.18908	33.087	32.987	33.176	0					7	4	2	0	0	0	0.23884	1	12643	12643		69.628	3.1983	1	172410	+		17092	14589	10580	10631	17359	17359					0.019645968920940504
IALGGVIVAS	10	Unmodified	_IALGGVIVAS_					0	0	0		ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.28173828125	2	450.28166	898.548768	-0.4814	-0.00021676	0.28486	0.00012827	-0.19654	-8.8497E-05	450.2817877804745	37.101	0.1531	37.101	37.026	37.179	0					8	4	2	0	0	0	0.4943	1	14046	14046		45.952	0	1	129950			17093	3467	10581	10632	17360	17360					0.09543545936935516
IALHFEPPQ	9	Unmodified	_IALHFEPPQ_					0	0	0		BCL6|p.N320Qfs*11|1|0.27|ENSG00000113916|chr3:187729447-187729448|-/G|frameshift_variant	BCL6|p.N320Qfs*11|1|0.27|ENSG00000113916|chr3:187729447-187729448|-/G|frameshift_variant	BCL6|p.N320Qfs*11|1|0.27|ENSG00000113916|chr3:187729447-187729448|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.28369140625	2	526.282192	1050.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.765	1	34.765	34.265	35.265	0								0	0	0	0.3368	1	13426	13426		27.882	1.1893	1				17094	289	10582	10633	17361	17361					0.026577603058285604
IALKRHVR	8	Unmodified	_IALKRHVR_					0	0	0			REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.8287048339844	2	496.827435	991.640317	2.8858	0.0014337	-0.41538	-0.00020637	2.4704	0.0012274	496.82729041076226	41.182	0.35428	41.182	41.002	41.357	0					14	8	2	0	0	0	0.6282	1	16370	16370		44.531	0	1	158790	+		17095	12115	10583	10634	17362	17362					0.14416274144787167
IALLLTEFY	9	Unmodified	_IALLLTEFY_					0	0	0		ENSG00000255223|ENST00000528616|OR5M11	ENSG00000255223|ENST00000528616|OR5M11	ENSG00000255223|ENST00000528616|OR5M11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.8096313476562	2	541.810251	1081.60595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.475	1	29.475	28.975	29.975	0								0	0	0	0.19085	1	9920	9920		52.299	13.493	1				17096	8015	10584	10635	17363	17363					0.06840968422648075
IALPERKRID	10	Unmodified	_IALPERKRID_					0	0	0		tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1	tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1	tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.24822998046875	3	404.247062	1209.71936	3.1325	0.0012663	-0.16152	-6.5295E-05	2.9709	0.001201	404.24704501447764	25.489	1.1029	25.489	25.179	26.282	0					42	20	5	0	0	0	0.64162	1	8921	8921		29.17	2.1227	1	1860600			17097	23035	10585	10636	17364	17364					0.12288456588407826
IALPGGGW	8	Unmodified	_IALPGGGW_					0	0	0		ENST00000471864.1_1_9:38621862-38622117:+|nuORF;nc|ENSG00000204860|Q5SY85|FAM201A	ENST00000471864.1_1_9:38621862-38622117:+|nuORF	ENST00000471864.1_1_9:38621862-38622117:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	385.7132568359375	2	385.713414	769.412274	-0.014232	-5.4896E-06	0.46918	0.00018097	0.45494	0.00017548	385.7134227541623	28.91	0.23037	28.91	28.814	29.044	0					10	8	2	0	0	0	0.70073	1	9055	9055		33.493	0	1	80833			17098	9858	10586	10637	17365	17365					0.018344764970947836
IALTHGKQY	9	Unmodified	_IALTHGKQY_					0	0	0			REV__ENSG00000184995|ENST00000448696|IFNE	REV__ENSG00000184995|ENST00000448696|IFNE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.787841796875	2	515.787641	1029.56073	0.74986	0.00038677	-0.3806	-0.00019631	0.36926	0.00019046	515.7873632930357	23.626	0.46712	23.626	23.432	23.899	0					28	11	3	0	0	0	0.2873	1	7224	7224		51.335	1.7994	1	339470	+		17099	17004	10587	10638	17366	17366					0.047131626801501625
IALVGKAM	8	Unmodified	_IALVGKAM_					0	0	0		STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant;ENSG00000163527|ENST00000295770|STT3B	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.7465515136719	2	401.746399	801.478245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.825	1	32.825	32.325	33.325	0								0	0	0	1.7419	1	12087	12087		83.287	8.7706	1				17100	5570	10588	10639	17367	17367					0.06956549347626151
IALVGKAM	8	Unmodified	_IALVGKAM_					0	0	0		STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant;ENSG00000163527|ENST00000295770|STT3B	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.7463684082031	2	401.746399	801.478245	0.055096	2.2135E-05	-0.27716	-0.00011135	-0.22206	-8.9212E-05	401.74624235110747	32.808	0.25821	32.808	32.688	32.946	0					13	6	3	0	0	0	0.4723	1	12494	12494		62.978	8.2138	1	299210			17101	5570	10588	10639	17368	17368					0.06956549347626151
IALVGKAM	8	Unmodified	_IALVGKAM_					0	0	0		STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant;ENSG00000163527|ENST00000295770|STT3B	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.7464294433594	2	401.746399	801.478245	-0.60055	-0.00024127	0.68509	0.00027523	0.084548	3.3967E-05	401.7466068052407	32.78	0.21577	32.78	32.676	32.892	0					6	4	2	0	0	0	0.49887	1	12400	12400		60.294	7.9948	1	307350			17102	5570	10588	10639	17369	17369					0.06956549347626151
IALVHTDSY	9	Unmodified	_IALVHTDSY_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.76470947265625	2	509.763832	1017.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.127	1	33.127	32.627	33.627	0								0	0	0	0.17378	1	10749	10749		38.806	0	1				17103	7647	10589	10640	17370	17370					0.005054636892737108
IALVHTDSY	9	Unmodified	_IALVHTDSY_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.763427734375	2	509.763832	1017.51311	0.94512	0.00048179	-1.0272	-0.00052363	-0.082078	-4.1841E-05	509.7631928789598	33.343	0.12674	33.343	33.3	33.426	0					6	3	2	0	0	0	0.10915	1	12332	12332		82.305	14.978	1	191270			17104	7647	10589	10640	17371	17371					0.005054636892737108
IALVHTDSY	9	Unmodified	_IALVHTDSY_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2654724121094	2	509.763832	1017.51311	-0.476	-0.00024265	0.7935	0.0004045	0.3175	0.00016185	509.76441327723484	33.165	0.2215	33.165	33.072	33.294	0					23	9	3	0	0	0	0.055856	2	11102	11093;11102		88.643	20.158	1	411690			17105	7647	10589	10640	17372;17373	17373					0.005054636892737108
IALVHTDSY	9	Unmodified	_IALVHTDSY_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7643737792969	2	509.763832	1017.51311	1.1808	0.00060195	-0.59558	-0.00030361	0.58526	0.00029834	509.763670414349	33.352	0.47775	33.352	33.176	33.654	0					24	11	3	0	0	0	0.0086566	1	12766	12766		143.02	86.298	1	1731800			17106	7647	10589	10640	17374	17374					0.005054636892737108
IALVHTDSY	9	Unmodified	_IALVHTDSY_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7639465332031	2	509.763832	1017.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.135	1	33.135	32.635	33.635	0								0	0	0	0.018211	1	11597	11597		97.473	17.533	1				17107	7647	10589	10640	17375	17375					0.005054636892737108
IALVHTDSY	9	Unmodified	_IALVHTDSY_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7637634277344	2	509.763832	1017.51311	1.3566	0.00069156	-1.3902	-0.00070867	-0.033553	-1.7104E-05	509.7631113626971	33.293	0.36626	33.293	33.183	33.549	0					21	7	4	0	0	0	0.00068477	1	12651	12651		190.71	102.07	1	1785500			17108	7647	10589	10640	17376	17376					0.005054636892737108
IALVHTDSY	9	Unmodified	_IALVHTDSY_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7637939453125	2	509.763832	1017.51311	3.0291	0.0015441	-2.4819	-0.0012652	0.54727	0.00027898	509.7630309867222	33.317	0.51221	33.317	33.121	33.633	0					26	10	4	0	0	0	0.014688	1	12646	12646		128.86	40.218	1	1506000			17109	7647	10589	10640	17377	17377					0.005054636892737108
IAMATVTAL	9	Oxidation (M)	_IAM(Oxidation (M))ATVTAL_		IAM(1)ATVTAL		IAM(89)ATVTAL	0	0	1		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7520751953125	2	453.751879	905.489204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.941	1	37.941	37.441	38.441	0								0	0	0	0.044332	1	13579	13579		88.643	19.856	1				17110	4912	10590	10641	17378	17378		200			0.032679069312507636
IAMATVTAL	9	Unmodified	_IAMATVTAL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.75445556640625	2	445.754421	889.494289	-0.45154	-0.00020128	0.45607	0.0002033	0.0045295	2.019E-06	445.75479427839883	46.75	0.14943	46.75	46.694	46.843	0					16	7	3	0	0	0	0.05357	1	18694	18694		94.006	28.203	1	150550			17111	4912	10590	10642	17379	17379					0.04512210793870963
IAMATVTAL	9	Unmodified	_IAMATVTAL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.7543029785156	2	445.754421	889.494289	0.80884	0.00036054	-0.87694	-0.0003909	-0.068108	-3.0359E-05	445.7540042986246	46.794	0.23671	46.794	46.686	46.923	0					16	11	2	0	0	0	0.013544	1	18689	18689		133.47	48.11	1	261910			17112	4912	10590	10642	17380	17380					0.04512210793870963
IAMEKLANE	9	Oxidation (M)	_IAM(Oxidation (M))EKLANE_		IAM(1)EKLANE		IAM(57)EKLANE	0	0	1		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7630615234375	2	517.762975	1033.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.755	1	25.755	25.255	26.255	0								0	0	0	0.1633	1	8235	8235		56.721	9.0637	1				17113	3100	10591	10643	17381	17381		136			-0.004019133909878292
IAMGMAQAL	9	Unmodified	_IAMGMAQAL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2330322265625	2	453.232799	904.451044	0.72081	0.00032669	-0.90501	-0.00041018	-0.18421	-8.3489E-05	453.23233017222316	45.733	0.23085	45.733	45.641	45.872	0					17	13	2	0	0	0	0.028654	1	17650	17650		110.34	46.13	1	311260			17114	6946	10592	10644	17382	17382					-0.005003022550567948
IAMGMAQAL	9	Unmodified	_IAMGMAQAL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2334289550781	2	453.232799	904.451044	-0.41522	-0.00018819	0.66456	0.0003012	0.24934	0.00011301	453.23296982532503	45.626	0.16739	45.626	45.576	45.743	0					11	6	2	0	0	0	0.097811	1	18276	18276		79.939	0.22664	1	69921			17115	6946	10592	10644	17383	17383					-0.005003022550567948
IAMGMAQAL	9	Unmodified	_IAMGMAQAL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2325439453125	2	453.232799	904.451044	0.87733	0.00039763	-1.7172	-0.0007783	-0.8399	-0.00038067	453.2321952620162	45.649	0.28569	45.649	45.542	45.828	0					24	11	3	0	0	0	0.015863	1	18272	18272		128.82	43.9	1	513820			17116	6946	10592	10644	17384	17384					-0.005003022550567948
IAMGTLLLGA	10	Oxidation (M)	_IAM(Oxidation (M))GTLLLGA_		IAM(1)GTLLLGA		IAM(56)GTLLLGA	0	0	1		tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.28204345703125	2	488.280803	974.547053	-0.016165	-7.8933E-06	3.2443	0.0015841	3.2281	0.0015762	488.2823876739541	17.877	0.12674	17.877	17.792	17.918	0					6	3	2	0	0	0	0.40673	1	4343	4343		55.504	9.532	1	518730			17117	22609	10593	10645	17385	17385		817			0.05876168856707409
IANIPLPLG	9	Unmodified	_IANIPLPLG_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.28387451171875	2	454.284203	906.553853	-1.1087	-0.00050368	0.22158	0.00010066	-0.88716	-0.00040302	454.28447230294375	26.056	1.1063	26.056	25.27	26.376	0					52	32	3	0	0	0	0.39123	1	7901	7901		42.474	0	1	197170			17118	1091	10594	10646	17386	17386					0.09683849799569089
IANTVVSII	9	Unmodified	_IANTVVSII_					0	0	0			REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF	REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2875671386719	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.827	1	40.827	40.327	41.327	0								0	0	0	0.099216	1	16089	16089		71.877	5.4482	1		+		17119	19514	10595	10647	17387	17387					0.09219528591370363
IANVDLVLS	9	Unmodified	_IANVDLVLS_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.27630615234375	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.694	1	30.694	30.194	31.194	0								0	0	0	0.1219	1	11392	11392		66.429	2.222	1				17120	6047	10596	10648	17388	17388					0.06502938211713172
IAPFLNAK	8	Unmodified	_IAPFLNAK_					0	0	0		tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2633361816406	2	437.263271	872.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.875	1	33.875	33.375	34.375	0								0	0	0	1.7419	1	11050	11050		37.028	0	1				17121	22666	10597	10649	17389	17389					0.07063294111026153
IAPGVTHEL	9	Unmodified	_IAPGVTHEL_					0	0	0		nc|ENSG00000100299|P15289-2|ARSA;nc|ENSG00000100299|P15289|ARSA;ENSG00000100299|ENST00000216124|ARSA	nc|ENSG00000100299|P15289-2|ARSA	nc|ENSG00000100299|P15289-2|ARSA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7608642578125	2	468.761092	935.507631	-0.51867	-0.00024313	-0.050676	-2.3755E-05	-0.56935	-0.00026689	468.7610988715673	29.737	0.315	29.737	29.648	29.963	0					15	6	4	0	0	0	0.062676	1	10926	10926		90.777	35.272	1	796880			17122	1997	10598	10650	17390	17390					0.03729784897461741
IAPNGALQL	9	Unmodified	_IAPNGALQL_					0	0	0		ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant;ENSG00000123268|ENST00000262053|ATF1	ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant	ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.7626953125	2	448.763635	895.512717	0.61995	0.00027821	-0.74736	-0.00033539	-0.12741	-5.7179E-05	448.76328132929035	43.049	0.25331	43.049	42.955	43.208	0					20	13	2	0	0	0	0.14603	1	16256	16256		68.787	5.4806	1	72508			17123	247	10599	10651	17391	17391					0.06078088760091305
IAPNGALQL	9	Unmodified	_IAPNGALQL_					0	0	0		ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant;ENSG00000123268|ENST00000262053|ATF1	ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant	ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.7628173828125	2	448.763635	895.512717	0.64396	0.00028899	-1.4633	-0.00065668	-0.81936	-0.0003677	448.76306235043444	43.079	0.21069	43.079	42.942	43.153	0					14	10	2	0	0	0	0.18605	1	16855	16855		63.306	7.8021	1	41003			17124	247	10599	10651	17392	17392					0.06078088760091305
IAPNGALQL	9	Unmodified	_IAPNGALQL_					0	0	0		ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant;ENSG00000123268|ENST00000262053|ATF1	ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant	ATF1|p.T261Lfs*2|1|0.16|ENSG00000123268|chr12:50819740-50819740|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.76336669921875	2	448.763635	895.512717	-0.40076	-0.00017984	0.2864	0.00012852	-0.11436	-5.1321E-05	448.76373597174836	43.043	0.32436	43.043	42.878	43.203	0					13	9	2	0	0	0	0.20551	1	17183	17183		60.972	5.4677	1	146790			17125	247	10599	10651	17393	17393					0.06078088760091305
IAPPLIAFGA	10	Unmodified	_IAPPLIAFGA_					0	0	0		nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;NLRC5|p.H1717Ifs*29|2|0.41|ENSG00000140853|chr16:57079112-57079112|C/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant;NLRC5|p.K611Rfs*3|1|0.42|ENSG00000140853|chr16:57026773-57026773|A/-|frameshift_variant	nc|ENSG00000140853|Q86WI3-2|NLRC5	nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7910461425781	2	485.292028	968.569503	-2.9151	-0.0014147	-1.8839	-0.00091424	-4.799	-0.0023289	485.29120630867004	31.398	0.25872	31.398	31.257	31.516	0					11	6	2	0	0	0	0.50739	1	10789	10789		44.531	3.7529	1	90059			17126	4410	10600	10652	17394	17394					0.08396136316605407
IAPTGHSL	8	Unmodified	_IAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	398.2215270996094	2	398.221603	794.428653	0.59169	0.00023563	-0.9562	-0.00038078	-0.36451	-0.00014515	398.22120810369245	23.224	0.36491	23.224	23.146	23.511	0					27	10	4	0	0	0	0.34985	1	6679	6679		76.847	10.949	1	4470200			17127	3411	10601	10653	17395	17395					0.023215576631855583
IAPTGHSL	8	Unmodified	_IAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.22137451171875	2	398.221603	794.428653	0.08287	3.3001E-05	-0.54006	-0.00021506	-0.45719	-0.00018206	398.2213207731106	23.522	0.41807	23.522	23.361	23.779	0					20	8	4	0	0	0	0.28158	1	8100	8100		88.643	14.126	1	6477100			17128	3411	10601	10653	17396	17396					0.023215576631855583
IAPTGHSL	8	Unmodified	_IAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.2214660644531	2	398.221603	794.428653	0.70312	0.00028	-1.0252	-0.00040826	-0.32208	-0.00012826	398.22128379004806	23.504	0.71756	23.504	23.344	24.062	0					37	14	5	0	0	0	0.34985	1	8092	8092		76.847	13.868	1	24453000			17129	3411	10601	10653	17397	17397					0.023215576631855583
IAPTGHSL	8	Unmodified	_IAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.2214660644531	2	398.221603	794.428653	-0.62712	-0.00024973	0.15776	6.2823E-05	-0.46936	-0.00018691	398.221673225322	23.492	0.66261	23.492	23.284	23.947	0					37	13	6	0	0	0	0.28158	1	7959	7959		88.643	14.126	1	21502000			17130	3411	10601	10653	17398	17398					0.023215576631855583
IAPTGHSL	8	Unmodified	_IAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.2214660644531	2	398.221603	794.428653	0.37563	0.00014958	-0.90633	-0.00036092	-0.53071	-0.00021134	398.22132321702287	23.475	0.71262	23.475	23.268	23.981	0					40	14	5	0	0	0	0.34985	1	7951	7951		76.847	13.868	1	29326000			17131	3411	10601	10653	17399	17399					0.023215576631855583
IAQAGLELG	9	Unmodified	_IAQAGLELG_					0	0	0		ENST00000556539.5_1_12:56736081-56736417:-|nuORF	ENST00000556539.5_1_12:56736081-56736417:-|nuORF	ENST00000556539.5_1_12:56736081-56736417:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.24713134765625	2	436.247818	870.481082	-0.27622	-0.0001205	-0.74446	-0.00032477	-1.0207	-0.00044527	436.2474724424313	23.537	0.38937	23.537	23.361	23.751	0					20	13	2	0	0	0	0.37197	1	6806	6806		44.117	6.3053	1	71151			17132	10665	10602	10654	17400	17400					0.040660960061472906
IAQALNQIK	9	Unmodified	_IAQALNQIK_					0	0	0		tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.80303955078125	2	499.803291	997.59203	0.16166	8.0797E-05	1.01	0.00050478	1.1716	0.00058558	499.8028978397743	30.068	0.18693	30.068	29.971	30.158	0					6	4	2	0	0	0	0.25109	1	10207	10207		55.504	0.72789	1	103900			17133	22871	10603	10655	17401	17401					0.09313735714215454
IAQDHRSSL	9	Unmodified	_IAQDHRSSL_					0	0	0		ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant;ARHGEF10|p.E997Gfs*16|1|0.43|ENSG00000104728|chr8:1928644-1928644|A/-|frameshift_variant;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7700805664062	2	513.76998	1025.52541	1.1183	0.00057457	2.5877	0.0013295	3.7061	0.0019041	513.7713240795541	18.262	0.66995	18.262	17.942	18.612	0					31	15	3	0	0	0	0.090954	1	5197	5197		81.525	20.553	1	13047000			17134	213	10604	10656	17402	17402					0.013665001523349929
IAQDHRSSL	9	Unmodified	_IAQDHRSSL_					0	0	0		ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant;ARHGEF10|p.E997Gfs*16|1|0.43|ENSG00000104728|chr8:1928644-1928644|A/-|frameshift_variant;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7699584960938	2	513.76998	1025.52541	-0.22537	-0.00011579	0.80092	0.00041149	0.57556	0.0002957	513.7703869924255	17.735	0.078308	17.735	17.691	17.77	0					4	2	2	0	0	0	0.24334	1	4513	4513		56.434	10.462	1	135110			17135	213	10604	10656	17403	17403					0.013665001523349929
IAQDHRSSL	9	Unmodified	_IAQDHRSSL_					0	0	0		ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant;ARHGEF10|p.E997Gfs*16|1|0.43|ENSG00000104728|chr8:1928644-1928644|A/-|frameshift_variant;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7702026367188	2	513.76998	1025.52541	1.3225	0.00067948	2.3703	0.0012178	3.6928	0.0018972	513.7697115780679	18.041	0.37113	18.041	17.887	18.258	0					15	7	3	0	0	0	0.44949	1	5458	5458		37.508	3.3356	1	1332100			17136	213	10604	10656	17404	17404					0.013665001523349929
IAQEASPR	8	Unmodified	_IAQEASPR_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.2353210449219	2	436.235242	870.45593	-0.88552	-0.00038629	0.2326	0.00010147	-0.65291	-0.00028482	436.23542215826365	33.864	0.23184	33.864	33.777	34.009	0					14	9	3	0	0	0	0.32815	1	11385	11385		79.451	5.4763	1	139770			17137	3177	10605	10657	17405	17405					0.015520412035698428
IAQIAQALL	9	Unmodified	_IAQIAQALL_					0	0	0		nc|ENSG00000184611|Q9NS40-2|KCNH7;KCNH7|p.N805Mfs*21|1|0.44|ENSG00000184611|chr2:162396939-162396939|T/-|frameshift_variant;KCNH7|p.D991Kfs*12|1|0.24|ENSG00000184611|chr2:162380007-162380014|GCATGTCA/-|frameshift_variant;ENSG00000184611|ENST00000332142|KCNH7;KCNH7|p.T216Sfs*24|1|0.03|ENSG00000184611|chr2:162517976-162517977|-/AGTATACGGA|frameshift_variant	nc|ENSG00000184611|Q9NS40-2|KCNH7	nc|ENSG00000184611|Q9NS40-2|KCNH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2966003417969	2	470.794935	939.575317	-0.60528	-0.00028496	0.78864	0.00037129	0.18336	8.6326E-05	470.79532282469745	35.381	0.25788	35.381	35.249	35.507	0					16	9	2	0	0	0	0.50461	1	12576	12576		31.955	0	1	68810			17138	7025	10606	10658	17406	17406					0.10311234828293436
IAREDLDV	8	Unmodified	_IAREDLDV_					0	0	0			REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.747802734375	2	465.748182	929.481811	-2.2881	-0.0010657	1.8914	0.00088091	-0.3967	-0.00018476	465.7490252114275	31.337	0.38747	31.337	31.128	31.516	0					15	10	2	0	0	0	0.65276	1	10721	10721		40.573	1.3198	1	118450	+		17139	14450	10607	10659	17407	17407					0.014248906551983964
IARQWAQI	8	Unmodified	_IARQWAQI_					0	0	0			REV__ENSG00000119714|ENST00000650645|GPR68	REV__ENSG00000119714|ENST00000650645|GPR68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2817077636719	2	493.282526	984.550499	-0.50457	-0.0002489	-0.83805	-0.0004134	-1.3426	-0.00066229	493.2819892471824	34.408	0.32906	34.408	34.323	34.652	0					13	8	2	0	0	0	0.32408	1	12821	12821		79.939	3.1651	1	656750	+		17140	14252	10608	10660	17408	17408					0.05760599745565287
IARSLGVLP	9	Unmodified	_IARSLGVLP_					0	0	0		sp|Q6SW92|UL40_HCMVMProteinUL40OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL40PE=3SV=1;sp|P16780|UL40_HCMVAProteinUL40OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL40PE=1SV=1	sp|Q6SW92|UL40_HCMVMProteinUL40OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL40PE=3SV=1	sp|Q6SW92|UL40_HCMVMProteinUL40OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL40PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.29473876953125	2	463.295102	924.575651	-0.70685	-0.00032748	0.01279	5.9256E-06	-0.69406	-0.00032155	463.29504507730474	33.081	0.40686	33.081	33.009	33.415	0					21	11	3	0	0	0	0.39123	1	12199	12199		42.474	3.6683	1	372620			17141	22470	10609	10661	17409	17409					0.11034654548143408
IASDIVSRF	9	Unmodified	_IASDIVSRF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2795715332031	2	504.279649	1006.54475	1.0276	0.00051821	-0.88532	-0.00044645	0.14231	7.1762E-05	504.2792989461095	39.775	0.18939	39.775	39.703	39.893	0					9	6	2	0	0	0	0.14578	1	15656	15656		68.846	15.495	1	115830			17142	2991	10610	10662	17410	17410					0.0417345644324314
IASDTRITA	9	Unmodified	_IASDTRITA_					0	0	0			REV__ENSG00000047056|ENST00000263150|WDR37	REV__ENSG00000047056|ENST00000263150|WDR37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.260498046875	2	474.261456	946.50836	-2.5931	-0.0012298	-0.27644	-0.00013111	-2.8695	-0.0013609	474.26154084358035	26.682	0.19384	26.682	26.582	26.776	0					9	4	3	0	0	0	0.14603	1	8636	8636		68.787	8.4929	1	191660	+		17143	13008	10611	10663	17411	17411					0.03296579546497469
IASGVTWIV	9	Unmodified	_IASGVTWIV_					0	0	0		tr|U7T418|U7T418_FUSNUIon-translocatingoxidoreductasecomplexsubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfAPE=3SV=1	tr|U7T418|U7T418_FUSNUIon-translocatingoxidoreductasecomplexsubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfAPE=3SV=1	tr|U7T418|U7T418_FUSNUIon-translocatingoxidoreductasecomplexsubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2757263183594	2	473.273835	944.533118	2.4037	0.0011376	0.81014	0.00038342	3.2139	0.001521	473.2743091412261	37.864	0.6765	37.864	37.674	38.35	0					32	14	3	0	0	0	0.51817	1	14901	14901		30.504	5.0535	1	161550			17144	22981	10612	10664	17412	17412					0.058632594199025334
IASKAVYVP	9	Unmodified	_IASKAVYVP_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.28118896484375	2	474.28166	946.548768	0.70422	0.000334	-4.3895	-0.0020819	-3.6853	-0.0017479	474.2809369537098	38.628	0.69277	38.628	38.48	39.173	0					28	14	4	0	0	0	0.16002	1	15217	15217		66.429	3.123	1	759000			17145	5443	10613	10665	17413	17413					0.07335545936950894
IASKNVPV	8	Unmodified	_IASKNVPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.25274658203125	2	414.252903	826.491253	-0.38671	-0.00016019	-0.00030921	-1.2809E-07	-0.38702	-0.00016032	414.2528694542611	28.171	1.1117	28.171	27.813	28.925	0					61	22	4	0	0	0	0.68754	1	10088	10088		35.201	1.6851	1	977350	+		17146	15602;22247	10614	10666	17414	17414					0.07106703731381003
IASLTSGP	8	Unmodified	_IASLTSGP_					0	0	0			REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF	REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.20989990234375	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.526	1	36.526	36.026	37.026	0								0	0	0	1.7419	1	14231	14231		26.796	3.7594	1		+		17147	19524	10615	10667	17415	17415					0.01934449052009768
IASRICRR	8	Unmodified	_IASRICRR_					0	0	0			REV__SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	REV__SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7877502441406	2	487.787453	973.560352	-0.35955	-0.00017538	1.6486	0.00080416	1.289	0.00062878	487.78846684177813	42.895	0.38058	42.895	42.666	43.047	0					24	19	2	0	0	0	0.61938	1	16220	16220		45.952	1.5748	1	148580	+		17148	21547	10616	10668	17416	17416					0.0725146447929319
IASRWIWDIAW	11	Unmodified	_IASRWIWDIAW_					0	0	0		ENSG00000184786|ENST00000366774|DYNLT2	ENSG00000184786|ENST00000366774|DYNLT2	ENSG00000184786|ENST00000366774|DYNLT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.92120361328125	3	472.918945	1415.73501	3.7236	0.0017609	-0.27079	-0.00012806	3.4528	0.0016329	472.91890701037215	33.393	0.42249	33.393	33.194	33.617	0					38	16	4	0	0	0	0.72624	1	11172	11172		25.126	4.0938	1	346110			17149	7035	10617	10669	17417	17417					0.0437674310546754
IASSRSVDL	9	Unmodified	_IASSRSVDL_					0	0	0		nc|ENSG00000135052|Q8NBJ4-2|GOLM1;ENSG00000135052|ENST00000388712|GOLM1;GOLM1|p.N182Efs*2|1|0.23|ENSG00000135052|chr9:86040796-86040797|-/T|frameshift_variant;GOLM1|p.K180Nfs*4|1|0.16|ENSG00000135052|chr9:86040796-86040797|-/A|frameshift_variant	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.25933837890625	2	474.261456	946.50836	-1.6002	-0.00075892	-0.97588	-0.00046282	-2.5761	-0.0012217	474.2609741536078	26.623	0.38299	26.623	26.461	26.844	0					26	14	3	0	0	0	0.1115	1	8380	8380		76.774	2.5191	1	310770			17150	3959	10618	10670	17418	17418					0.03296579546531575
IASSRSVDL	9	Unmodified	_IASSRSVDL_					0	0	0		nc|ENSG00000135052|Q8NBJ4-2|GOLM1;ENSG00000135052|ENST00000388712|GOLM1;GOLM1|p.N182Efs*2|1|0.23|ENSG00000135052|chr9:86040796-86040797|-/T|frameshift_variant;GOLM1|p.K180Nfs*4|1|0.16|ENSG00000135052|chr9:86040796-86040797|-/A|frameshift_variant	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2605895996094	2	474.261456	946.50836	0.60853	0.0002886	-2.0934	-0.00099284	-1.4849	-0.00070424	474.26070802005756	26.87	0.40833	26.87	26.761	27.169	0					15	8	3	0	0	0	0.10506	1	9682	9682		78.264	12.461	1	2617600			17151	3959	10618	10670	17419	17419					0.03296579546531575
IASSRSVDL	9	Unmodified	_IASSRSVDL_					0	0	0		nc|ENSG00000135052|Q8NBJ4-2|GOLM1;ENSG00000135052|ENST00000388712|GOLM1;GOLM1|p.N182Efs*2|1|0.23|ENSG00000135052|chr9:86040796-86040797|-/T|frameshift_variant;GOLM1|p.K180Nfs*4|1|0.16|ENSG00000135052|chr9:86040796-86040797|-/A|frameshift_variant	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.260986328125	2	474.261456	946.50836	-0.46505	-0.00022056	-0.6817	-0.00032331	-1.1468	-0.00054386	474.26147151991336	26.695	0.36199	26.695	26.552	26.914	0					13	8	2	0	0	0	0.19952	1	8621	8621		61.691	10.356	1	301260			17152	3959	10618	10670	17420	17420					0.03296579546531575
IASSRSVDL	9	Unmodified	_IASSRSVDL_					0	0	0		nc|ENSG00000135052|Q8NBJ4-2|GOLM1;ENSG00000135052|ENST00000388712|GOLM1;GOLM1|p.N182Efs*2|1|0.23|ENSG00000135052|chr9:86040796-86040797|-/T|frameshift_variant;GOLM1|p.K180Nfs*4|1|0.16|ENSG00000135052|chr9:86040796-86040797|-/A|frameshift_variant	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2607116699219	2	474.261456	946.50836	0.69556	0.00032988	-1.2729	-0.0006037	-0.57738	-0.00027383	474.2611512419377	26.826	0.41574	26.826	26.688	27.103	0					19	8	3	0	0	0	0.10506	1	9525	9525		78.264	19.482	1	1445300			17153	3959	10618	10670	17421	17421					0.03296579546531575
IASSSIAAK	9	Unmodified	_IASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.2477111816406	2	424.247818	846.481082	0.34109	0.00014471	-0.72003	-0.00030547	-0.37895	-0.00016077	424.2475089526851	19.382	0.15359	19.382	19.277	19.43	0					9	3	3	0	0	0	0.07136	1	5823	5823		87.696	26.724	1	657450			17154	5846	10619	10671	17422	17422					0.05170096006145286
IASVEGRKK	9	Unmodified	_IASVEGRKK_					0	0	0		ENSG00000196184|ENST00000423932|OR10J1;nc|ENSG00000196184|P30954|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.8049011230469	2	494.300916	986.587279	-0.44898	-0.00022193	0.68269	0.00033746	0.23371	0.00011552	494.30094264488787	21.789	0.30805	21.789	21.682	21.99	0					25	7	5	0	0	0	0.33044	1	7024	7024		47.657	1.6851	1	2037500			17155	7336	10620	10672	17423	17423					0.09344851571484014
IASVTIQRN	9	Unmodified	_IASVTIQRN_					0	0	0			REV__TECRL|p.F296Sfs*21|1|0.34|ENSG00000205678|chr4:64281505-64281505|A/-|frameshift_variant	REV__TECRL|p.F296Sfs*21|1|0.34|ENSG00000205678|chr4:64281505-64281505|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.29144287109375	2	501.290548	1000.56654	0.76627	0.00038412	-0.71844	-0.00036015	0.047828	2.3975E-05	501.29010053105077	49.521	1.023	49.521	48.961	49.984	0					115	61	2	0	0	0	0.44593	1	15371	15371		30.504	8.5438	1	168860	+		17156	17532	10621	10673	17424	17424					0.06628261191804086
IASWKGLV	8	Unmodified	_IASWKGLV_					0	0	0		ENSG00000224051|ENST00000343938|CPTP	ENSG00000224051|ENST00000343938|CPTP	ENSG00000224051|ENST00000343938|CPTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.26470947265625	2	437.263271	872.511988	2.6737	0.0011691	0.42006	0.00018368	3.0938	0.0013528	437.2634003668624	36.767	0.50652	36.767	36.647	37.154	0					17	10	2	0	0	0	0.46905	1	14326	14326		63.306	3.0123	1	208690			17157	7862	10622	10674	17425	17425					0.0706329411104889
IATALHVAGA	10	Unmodified	_IATALHVAGA_					0	0	0			REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2688293457031	2	462.269084	922.523616	-0.7202	-0.00033293	0.055894	2.5838E-05	-0.6643	-0.00030709	462.2691285740343	19.703	0.26883	19.703	19.6	19.869	0					13	6	3	0	0	0	0.24485	1	6003	6003		73.975	34.722	1	327540	+		17158	15254	10623	10675	17426	17426					0.0592549113438281
IATLAVHS	8	Unmodified	_IATLAVHS_					0	0	0			REV__NYNRIN|p.G1206Vfs*50|1|0.1|ENSG00000205978|chr14:24415362-24415362|G/-|frameshift_variant	REV__NYNRIN|p.G1206Vfs*50|1|0.1|ENSG00000205978|chr14:24415362-24415362|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.23724365234375	2	406.237253	810.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.689	1	30.689	30.189	31.189	0								0	0	0	1.7419	1	9801	9801		33.516	5.2613	1		+		17159	17537	10624	10676	17427	17427					0.047141306972775965
IATLRSILD	9	Unmodified	_IATLRSILD_					0	0	0			REV__nc|ENSG00000183814|Q5TKA1-3|LIN9	REV__nc|ENSG00000183814|Q5TKA1-3|LIN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3044128417969	2	501.303124	1000.5917	2.9228	0.0014652	0.48145	0.00024135	3.4042	0.0017065	501.30330919265134	45.081	0.23153	45.081	45.031	45.263	0					14	10	2	0	0	0	0.40353	1	18063	18063		41.427	3.6151	1	96820	+		17160	16956	10625	10677	17428	17428					0.09142315994370165
IATLSKIVF	9	Unmodified	_IATLSKIVF_					0	0	0			REV__ENST00000508935.1_1_5:102509577-102509760:+|nuORF	REV__ENST00000508935.1_1_5:102509577-102509760:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.3121643066406	2	496.312961	990.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.549	1	46.549	46.049	47.049	0								0	0	0	0.38123	1	14344	14344		16.473	3.514	1		+		17161	19856	10626	10678	17429	17429					0.11568692005130288
IATNGTPEL	9	Unmodified	_IATNGTPEL_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2	ENSG00000149269|ENST00000356341|PAK1;PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	ENSG00000149269|ENST00000356341|PAK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2428283691406	2	458.242732	914.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.216	1	35.216	34.716	35.716	0								0	0	0	0.10826	1	13631	13631		69.628	17.328	1				17162	4872;6802	10627	10679	17430	17430					0.010254882808908405
IATQVVVEK	9	Unmodified	_IATQVVVEK_					0	0	0		VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.79736328125	2	493.797675	985.580796	-0.048488	-2.3943E-05	-0.2891	-0.00014276	-0.33759	-0.0001667	493.7974278323901	25.418	0.21199	25.418	25.307	25.519	0					10	4	4	0	0	0	0.01942	2	9027	9009;9027		122.94	32.569	1	620750			17163	7698	10628	10680	17431;17432	17432					0.08742913620096715
IATSDQDISI	10	Unmodified	_IATSDQDISI_					0	0	0			REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.7701416015625	2	531.769311	1061.52407	1.17	0.00062216	0.74024	0.00039363	1.9102	0.0010158	531.7698009670104	30.344	0.19069	30.344	30.251	30.442	0					8	4	2	0	0	0	0.47859	1	10359	10359		47.657	5.2612	1	195920	+		17164	21789	10629	10681	17433	17433					-0.004231787270782661
IAVEKDQVY	9	Unmodified	_IAVEKDQVY_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7849731445312	2	532.784764	1063.55498	2.357	0.0012558	-2.2253	-0.0011856	0.1317	7.0168E-05	532.783366148699	29.533	0.25992	29.533	29.324	29.584	0					10	6	2	0	0	0	0.048471	1	10551	10551		95.815	23.938	1	213870			17165	7324	10630	10682	17434	17434					0.025740193778119647
IAVGKEKS	8	Unmodified	_IAVGKEKS_					0	0	0			REV__ENST00000435067.2_1_13:46254770-46254863:-|nuORF	REV__ENST00000435067.2_1_13:46254770-46254863:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.25048828125	2	416.25036	830.486168	3.4098	0.0014193	-3.7193	-0.0015482	-0.30954	-0.00012885	416.24903520886	25.61	0.1148	25.61	25.568	25.683	0					6	3	2	0	0	0	0.60719	1	7991	7991		47.916	0	1	66154	+		17166	19200	10631	10683	17435	17435					0.06414399868754117
IAVGKGSSL	9	Unmodified	_IAVGKGSSL_					0	0	0		ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	416.25079345703125	2	416.25036	830.486168	0.53692	0.00022349	-0.67887	-0.00028258	-0.14195	-5.9088E-05	416.2501193556747	25.57	0.1294	25.57	25.497	25.626	0					8	4	2	0	0	0	0.15163	1	7697	7697		67.494	4.1874	1	160300			17167	4515	10632	10684	17436	17436					0.06414399868754117
IAVGKGSSL	9	Unmodified	_IAVGKGSSL_					0	0	0		ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.2500915527344	2	416.25036	830.486168	0.066683	2.7757E-05	-0.96973	-0.00040365	-0.90305	-0.00037589	416.2500453368666	25.893	0.19584	25.893	25.755	25.951	0					4	2	2	0	0	0	0.55379	1	9215	9215		26.693	3.6504	1	231630			17168	4515	10632	10684	17437	17437					0.06414399868754117
IAVGKGSSL	9	Unmodified	_IAVGKGSSL_					0	0	0		ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.25018310546875	2	416.25036	830.486168	0.085098	3.5422E-05	-0.32242	-0.00013421	-0.23732	-9.8784E-05	416.25024452901357	25.662	0.13953	25.662	25.581	25.72	0					5	3	2	0	0	0	0.13267	1	8201	8201		71.877	14.066	1	176900			17169	4515	10632	10684	17438	17438					0.06414399868754117
IAVGKGSSL	9	Unmodified	_IAVGKGSSL_					0	0	0		ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.25054931640625	2	416.25036	830.486168	-0.058915	-2.4523E-05	-0.40316	-0.00016782	-0.46207	-0.00019234	416.2502389255474	25.695	0.095453	25.695	25.608	25.703	0					4	2	2	0	0	0	0.24095	1	8197	8197		56.721	5.3856	1	115660			17170	4515	10632	10684	17439	17439					0.06414399868754117
IAVGVDNENQ	10	Unmodified	_IAVGVDNENQ_					0	0	0			REV__ENST00000429105.1_1_1:224762276-224762375:+|nuORF	REV__ENST00000429105.1_1_1:224762276-224762375:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7597045898438	2	529.759278	1057.504	1.7349	0.00091908	-0.15738	-8.3376E-05	1.5775	0.00083571	529.7592507486047	25.975	0.34595	25.975	25.738	26.084	0					12	5	3	0	0	0	0.47859	1	9257	9257		47.657	4.7931	1	666610	+		17171	19143	10633	10685	17440	17440					-0.022449296670629337
IAVHPEKGL	9	Unmodified	_IAVHPEKGL_					0	0	0		LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2843933105469	2	482.284734	962.554916	-0.10627	-5.1255E-05	-0.40534	-0.00019549	-0.51162	-0.00024675	482.2845030787624	35.301	0.60722	35.301	35.104	35.711	0					37	16	4	0	0	0	0.13519	1	13197	13197		71.296	2.5089	1	4221600			17172	6112	10634	10686	17441	17441					0.07214064168476853
IAVKKAEPS	9	Unmodified	_IAVKKAEPS_					0	0	0			REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7842712402344	2	471.784567	941.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.15	1	36.15	35.65	36.65	0								0	0	0	0.32356	1	12245	12245		30.504	0	1		+		17173	12090	10635	10687	17442	17442					0.0814664444861819
IAVNIVYCC	9	Unmodified	_IAVNIVYCC_					0	0	0			REV__ENST00000481451.1_1_10:124172402-124177583:+|nuORF	REV__ENST00000481451.1_1_10:124172402-124177583:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2463073730469	2	499.245906	996.477259	0.67497	0.00033698	-0.29202	-0.00014579	0.38296	0.00019119	499.2457385632511	31.87	0.86253	31.87	31.452	32.315	0					53	21	3	0	0	0	0.5392	1	11577	11577		28.254	2.8041	1	369500	+		17174	19599	10636	10688	17443	17443					-0.021120330835856294
IAVNKAGP	8	Unmodified	_IAVNKAGP_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.2319030761719	2	385.231971	768.449388	0.1859	7.1615E-05	-1.3817	-0.00053227	-1.1958	-0.00046065	385.23185020361774	31.803	0.53972	31.803	31.555	32.095	0					19	11	3	0	0	0	0.7155	1	11973	11973		31.579	8.5422	1	296870			17175	6752	10637	10689	17444	17444					0.055901480428588
IAVSCLTIK	9	Unmodified	_IAVSCLTIK_					0	0	0		TMPRSS15|p.N484Tfs*4|1|0.28|ENSG00000154646|chr21:18341526-18341526|T/-|frameshift_variant;TMPRSS15|p.L776Tfs*15|1|0.21|ENSG00000154646|chr21:18294430-18294431|-/T|frameshift_variant;TMPRSS15|p.K775Nfs*58|1|0.41|ENSG00000154646|chr21:18294431-18294431|T/-|frameshift_variant;ENSG00000154646|ENST00000284885|TMPRSS15	TMPRSS15|p.N484Tfs*4|1|0.28|ENSG00000154646|chr21:18341526-18341526|T/-|frameshift_variant	TMPRSS15|p.N484Tfs*4|1|0.28|ENSG00000154646|chr21:18341526-18341526|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2812805175781	2	474.283346	946.552139	0.69428	0.00032929	2.536	0.0012028	3.2303	0.0015321	474.28434917122223	41.428	0.78172	41.428	40.748	41.53	0					20	16	2	0	0	0	0.41113	1	16422	16422		40.778	5.1599	1	172350			17176	5095	10638	10690	17445	17445					0.07672472719309553
IAVSGLNNLY	10	Unmodified	_IAVSGLNNLY_					0	0	0			REV__ENST00000327535.5_1_1:24482054-24482345:-|nuORF	REV__ENST00000327535.5_1_1:24482054-24482345:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2926025390625	2	532.292756	1062.57096	0.3699	0.0001969	-0.3822	-0.00020344	-0.012296	-6.5449E-06	532.2923597314457	33.487	0.25394	33.487	33.366	33.62	0					17	8	3	0	0	0	0.54197	1	10885	10885		40.778	1.5253	1	152180	+		17177	18364	10639	10691	17446	17446					0.04217725614716983
IAYFGVSAAL	10	Unmodified	_IAYFGVSAAL_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.28076171875	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.879	1	45.879	45.379	46.379	0								0	0	0	0.40446	1	18381	18381		29.15	1.2673	1				17178	4335	10640	10692	17447	17447					0.03883242074334703
IAYKNKLTQ	9	Unmodified	_IAYKNKLTQ_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.D1169Ifs*15|1|0.38|ENSG00000129003|chr15:61962469-61962469|C/-|frameshift_variant;VPS13C|p.S463Vfs*3|1|0.39|ENSG00000129003|chr15:61991770-61991771|-/T|frameshift_variant;VPS13C|p.S1021Hfs*3|1|0.08|ENSG00000129003|chr15:61964852-61964852|A/-|frameshift_variant;VPS13C|p.N1066Ifs*25|2|0.27|ENSG00000129003|chr15:61964716-61964716|T/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.21331787109375	3	360.213358	1077.61824	1.4283	0.00051448	-1.7253	-0.00062146	-0.297	-0.00010698	360.2127811764856	21.019	0.26326	21.019	20.913	21.176	0					8	5	3	0	0	0	0.56424	1	6920	6920		25.574	5.5773	1	454380			17179	3575	10641	10693	17448	17448					0.0825400488570267
IAYWLQQAK	9	Unmodified	_IAYWLQQAK_					0	0	0			REV__ENSG00000167325|ENST00000300738|RRM1	REV__ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.20977783203125	3	374.209836	1119.60768	0.74641	0.00027931	-1.3197	-0.00049385	-0.57331	-0.00021454	374.20933113810696	33.291	0.41638	33.291	33.183	33.6	0					14	8	2	0	0	0	0.47428	1	12654	12654		34.173	1.422	1	351900	+		17180	16184	10642	10694	17449	17449					0.05266022231262468
ICANDVTNALI	11	Unmodified	_ICANDVTNALI_					0	0	0			REV__CON__H-INV:HIT000015463	REV__CON__H-INV:HIT000015463	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.7950439453125	2	573.794806	1145.57506	-0.13995	-8.0304E-05	0.6313	0.00036224	0.49135	0.00028193	573.7952549102941	29.691	0.21879	29.691	29.582	29.801	0					11	4	3	0	0	0	0.45317	1	11011	11011		47.657	0	1	160440	+	+	17181	12582	10643	10695	17450	17450					0.008094470461173842
ICCLRQNMI	9	Unmodified	_ICCLRQNMI_					0	0	0			REV__ENSG00000274102|ENST00000614722|OR4M2	REV__ENSG00000274102|ENST00000614722|OR4M2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.2688598632812	2	547.26939	1092.52423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.801	1	18.801	18.301	19.301	0								0	0	0	0.28164	1	4741	4741		38.806	1.647	1		+		17182	16903	10644	10696	17451	17451					-0.01833496804101742
ICDLYLEL	8	Unmodified	_ICDLYLEL_					0	0	0			REV__ENSG00000113296|ENST00000350881|THBS4	REV__ENSG00000113296|ENST00000350881|THBS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.25347900390625	2	491.251711	980.48887	2.6922	0.0013226	0.58505	0.00028741	3.2773	0.00161	491.2520956810564	25.834	0.50029	25.834	25.684	26.185	0					15	8	3	0	0	0	0.28158	1	9057	9057		88.643	14.126	1	3949000	+		17183	14034	10645	10697	17452	17452					-0.0021551278861124956
ICEATKAIS	9	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))EATKAIS_	IC(1)EATKAIS		IC(73)EATKAIS		0	1	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7576904296875	2	496.757692	991.500831	-2.3404	-0.0011626	2.5536	0.0012685	0.21315	0.00010588	496.759116140983	29.965	0.26406	29.965	29.754	30.018	0					9	7	2	0	0	0	0.12834	1	10152	10152		72.879	11.115	1	299960			17184	6578	10646	10698	17453	17453	280				0.004741039545933745
ICEGSIKHF	9	Unmodified	_ICEGSIKHF_					0	0	0		ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENST00000452150.6_1_6:131179278-131188835:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2619018554688	2	517.260402	1032.50625	3.318	0.0017163	-0.59759	-0.00030911	2.7204	0.0014072	517.2600334582621	25.065	0.31924	25.065	24.979	25.298	0					14	6	3	0	0	0	0.16002	1	8726	8726		66.429	0	1	3392800			17185	9658	10647	10699	17454	17454					-0.008701724629418095
ICFTCSCCC	9	Unmodified	_ICFTCSCCC_					0	0	0		ENST00000460758.1_1_3:48511100-48514492:-|nuORF;nc|ENSG00000164054|Q8N114-4|SHISA5;ENST00000466424.5_1_3:48509548-48511229:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000494854.5_1_3:48510739-48514492:-|nuORF;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5	ENST00000460758.1_1_3:48511100-48514492:-|nuORF	ENST00000460758.1_1_3:48511100-48514492:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.65106201171875	2	491.651612	981.288672	-0.53788	-0.00026445	0.56174	0.00027618	0.02386	1.1731E-05	491.6519492301925	50.06	0.49453	50.06	49.946	50.441	0					45	25	2	0	0	0	0.61124	2	18108	18108;18151		8.2313	3.915	1	181710			17186	5644	10648	10700	17455;17456	17455					-0.20272093315372786
ICFTCSCCC	9	Unmodified	_ICFTCSCCC_					0	0	0		ENST00000460758.1_1_3:48511100-48514492:-|nuORF;nc|ENSG00000164054|Q8N114-4|SHISA5;ENST00000466424.5_1_3:48509548-48511229:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000494854.5_1_3:48510739-48514492:-|nuORF;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5	ENST00000460758.1_1_3:48511100-48514492:-|nuORF	ENST00000460758.1_1_3:48511100-48514492:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.6518859863281	2	491.651612	981.288672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.339	1	49.339	48.839	49.839	0								0	0	0	0.37821	1	16271	16271		17.365	7.1802	1				17187	5644	10648	10700	17457	17457					-0.20272093315372786
ICGARSWAE	9	Unmodified	_ICGARSWAE_					0	0	0		ENST00000449853.2_1_1:16935265-16939994:-|nuORF	ENST00000449853.2_1_1:16935265-16939994:-|nuORF	ENST00000449853.2_1_1:16935265-16939994:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7357177734375	2	496.734551	991.45455	2.8857	0.0014334	-0.76247	-0.00037874	2.1233	0.0010547	496.7342205429277	15.473	0.30126	15.473	15.38	15.681	0					13	6	3	0	0	0	0.099922	1	4100	4100		79.451	5.4763	1	1031900			17188	9642	10649	10701	17458	17458					-0.04151916156843072
ICHELDAIS	9	Unmodified	_ICHELDAIS_					0	0	0		ENST00000439523.1_1_1:247206892-247207219:+|nuORF	ENST00000439523.1_1_1:247206892-247207219:+|nuORF	ENST00000439523.1_1_1:247206892-247207219:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7420654296875	2	500.742042	999.469531	0.91778	0.00045957	-2.9802	-0.0014923	-2.0624	-0.0010327	500.7401637612056	32.877	0.47652	32.877	32.793	33.269	0					18	11	3	0	0	0	0.18605	1	12540	12540		63.306	11.971	1	1362800			17189	9563	10650	10702	17459	17459					-0.030224690795193965
ICHYFKGA	8	Unmodified	_ICHYFKGA_					0	0	0			REV__SCN1A|p.N1378S|1|0.39|ENSG00000144285|chr2:166002623-166002623|T/C|missense_variant	REV__SCN1A|p.N1378S|1|0.39|ENSG00000144285|chr2:166002623-166002623|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.6979675292969	2	469.73128	937.448008	-0.94819	-0.00044539	-1.8289	-0.0008591	-2.7771	-0.0013045	469.7303901034022	14.488	0.37907	14.488	14.251	14.63	0					15	8	2	0	0	0	0.7914	1	3716	3716		14.664	14.664	1	177750	+		17190	14866	10651	10703	17460	17460					-0.023218093175501053
ICIVCSAIY	9	Unmodified	_ICIVCSAIY_					0	0	0		ENST00000536683.5_1_11:94966793-94966961:+|nuORF	ENST00000536683.5_1_11:94966793-94966961:+|nuORF	ENST00000536683.5_1_11:94966793-94966961:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7482604980469	2	492.748282	983.48201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.114	1	31.114	30.614	31.614	0								0	0	0	0.20652	1	11703	11703		50.025	0.81375	1				17191	10491	10652	10704	17461	17461					-0.010391489408220878
ICIVYPCRC	9	Unmodified	_ICIVYPCRC_					0	0	0		RXFP1|p.F518C|1|0.14|ENSG00000171509|chr4:158646998-158646998|T/G|missense_variant	RXFP1|p.F518C|1|0.14|ENSG00000171509|chr4:158646998-158646998|T/G|missense_variant	RXFP1|p.F518C|1|0.14|ENSG00000171509|chr4:158646998-158646998|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2532348632812	2	535.253208	1068.49186	0.14009	7.4982E-05	0.55904	0.00029923	0.69913	0.00037421	535.253443019782	36.053	0.36092	36.053	35.899	36.26	0					35	16	3	0	0	0	0.55282	1	12169	12169		26.796	26.796	1	725480			17192	22368	10653	10705	17462	17462					-0.039642842071089035
ICKGGKTL	8	Unmodified	_ICKGGKTL_					0	0	0		ENST00000456936.3_1_5:114951687-114951792:-|nuORF	ENST00000456936.3_1_5:114951687-114951792:-|nuORF	ENST00000456936.3_1_5:114951687-114951792:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	410.23980712890625	2	410.241481	818.468409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.673	1	36.673	36.173	37.173	0								0	0	0	1.7419	1	12420	12420		33.516	3.674	1				17193	9690	10654	10706	17463	17463					0.05191361342269829
ICKVDQGKQ	9	Unmodified	_ICKVDQGKQ_					0	0	0			REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7718200683594	2	509.771134	1017.52771	0.94567	0.00048208	2.6991	0.0013759	3.6448	0.001858	509.7723485741662	22.893	0.34078	22.893	22.766	23.107	0					15	8	2	0	0	0	0.13726	1	7517	7517		64.207	0	1	529400	+		17194	21803	10655	10707	17464	17464					0.019652125657898978
ICLHAMNI	8	Unmodified	_ICLHAMNI_					0	0	0			REV__PYGM|p.R439H|1|0.44|ENSG00000068976|chr11:64753606-64753606|C/T|missense_variant	REV__PYGM|p.R439H|1|0.44|ENSG00000068976|chr11:64753606-64753606|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.73272705078125	2	457.732966	913.451379	-0.40106	-0.00018358	-1.2323	-0.00056408	-1.6334	-0.00074766	457.7324055698435	22.626	0.16479	22.626	22.554	22.719	0					7	5	2	0	0	0	0.4434	1	6442	6442		65.897	2.5912	1	212800	+		17195	13156	10656	10708	17465	17465					-0.008808825352048189
ICLIYFLPSP	10	Unmodified	_ICLIYFLPSP_					0	0	0		ENST00000604516.1_1_6:79943638-79943913:+|nuORF	ENST00000604516.1_1_6:79943638-79943913:+|nuORF	ENST00000604516.1_1_6:79943638-79943913:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.3201293945312	2	583.319928	1164.6253	0.0037388	2.1809E-06	0.25041	0.00014607	0.25414	0.00014825	583.3200256857735	19.302	0.20319	19.302	19.198	19.402	0					10	4	3	0	0	0	0.64162	1	5810	5810		6.7355	0	1	920660			17196	11066	10657	10709	17466	17466					0.049576014419017156
ICLNGTPALA	10	Unmodified	_ICLNGTPALA_					0	0	0		ENSG00000105223|ENST00000409735|PLD3;ENST00000475983.1_1_19:40877588-40880546:+|nuORF	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7652587890625	2	486.762778	971.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.23	1	17.23	16.73	17.73	0								0	0	0	0.37602	1	4252	4252		18.324	5.3652	1				17197	2338	10658	10710	17467	17467					0.02410711679817723
ICLRVRFT	8	Unmodified	_ICLRVRFT_					0	0	0			REV__ENST00000485560.5_3_10:38146171-38146261:-|nuORF	REV__ENST00000485560.5_3_10:38146171-38146261:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.83	1	23.83	23.33	24.33	0								0	0	0	1.7419	1	8136	8136		25.574	0	1		+		17198	19655	10659	10711	17468	17468					0.07158116907589829
ICLVTPSMTL	10	Oxidation (M)	_ICLVTPSM(Oxidation (M))TL_		ICLVTPSM(1)TL		ICLVTPSM(66)TL	0	0	1		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2849731445312	2	547.285228	1092.5559	-1.5037	-0.00082293	1.8363	0.001005	0.3326	0.00018202	547.2861371942244	40.579	0.2025	40.579	40.483	40.686	0					18	11	2	0	0	0	0.30737	1	14391	14391		66.429	16.988	1	70740			17199	5021	10660	10712	17469	17469		206			0.013327744308526235
ICMVCCRE	8	Carbamidomethyl (C)	_ICMVC(Carbamidomethyl (C))CRE_	ICMVC(0.5)C(0.5)RE		IC(-38)MVC(0)C(0)RE		0	1	0		ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26	ENST00000554523.5_1_14:68228796-68282710:-|nuORF	ENST00000554523.5_1_14:68228796-68282710:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2041320800781	2	507.205401	1012.39625	-0.37122	-0.00018828	-1.8975	-0.00096243	-2.2687	-0.0011507	507.20438378972443	23.939	0.51772	23.939	23.629	24.146	0					15	10	2	0	0	0	0.64096	1	8325	8325		42.474	9.662	3	122620			17200	1483	10661	10713	17470	17470	57;58				-0.10945380389625825
ICNKQDCPI	9	Unmodified	_ICNKQDCPI_					0	0	0		ENST00000497720.1_1_15:39880352-39880920:+|nuORF;nc|ENSG00000137801|P07996-2|THBS1;ENSG00000137801|ENST00000260356|THBS1;CON__Q28194	ENST00000497720.1_1_15:39880352-39880920:+|nuORF	ENST00000497720.1_1_15:39880352-39880920:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2432861328125	2	517.243895	1032.47324	-1.4627	-0.00075658	1.0867	0.00056207	-0.37605	-0.00019451	517.2443890238605	23.47	0.4634	23.47	23.284	23.747	0					25	11	3	0	0	0	0.12239	1	7135	7135		74.255	74.255	1	589610		+	17201	651	10662	10714	17471	17471					-0.04170122577306756
ICPGRLFAI	9	Unmodified	_ICPGRLFAI_					0	0	0		ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.28436279296875	2	495.28368	988.552807	0.70564	0.00034949	-0.23569	-0.00011673	0.46995	0.00023276	495.28362812553667	47.774	0.24347	47.774	47.696	47.939	0					34	14	3	0	0	0	0.50461	1	18183	18183		31.955	6.5047	1	280950			17202	6038	10663	10715	17472	17472					0.05807312159004141
ICQDCGRRK	9	Unmodified	_ICQDCGRRK_					0	0	0		ENSG00000105707|ENST00000672452|HPN	ENSG00000105707|ENST00000672452|HPN	ENSG00000105707|ENST00000672452|HPN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7670288085938	2	539.76586	1077.51717	1.9628	0.0010594	0.4382	0.00023653	2.401	0.001296	539.765920639564	17.183	0.1322	17.183	17.102	17.235	0					8	3	3	0	0	0	0.13109	1	4818	4818		65.465	17.808	1	215980			17203	2390	10664	10716	17473	17473					-0.01849093360306142
ICQKRVVT	8	Unmodified	_ICQKRVVT_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|12|1|sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|12|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7809753417969	2	473.778762	945.542971	-0.58937	-0.00027923	-0.81697	-0.00038706	-1.4063	-0.00066629	473.7785193985972	21.945	0.81577	21.945	21.789	22.605	0					38	16	5	0	0	0	0.65276	1	7383	7383		40.573	1.7665	1	22644000	+		17204	20725	10665	10717	17474	17474					0.06802124153637124
ICQLPQGTL	9	Unmodified	_ICQLPQGTL_					0	0	0			REV__ENST00000586212.1_1_19:3532513-3533660:+|nuORF	REV__ENST00000586212.1_1_19:3532513-3533660:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7650451660156	2	486.762778	971.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.211	1	17.211	16.711	17.711	0								0	0	0	0.2591	1	4271	4271		12.959	0	1		+		17205	13769	10666	10718	17475	17475					0.02410711679851829
ICQLPQGTL	9	Unmodified	_ICQLPQGTL_					0	0	0			REV__ENST00000586212.1_1_19:3532513-3533660:+|nuORF	REV__ENST00000586212.1_1_19:3532513-3533660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7643737792969	2	486.762778	971.511002	-0.54691	-0.00026622	3.3073	0.0016099	2.7604	0.0013436	486.7644221741512	17.423	0.25542	17.423	17.243	17.498	0					9	5	2	0	0	0	0.30951	1	5019	5019		25.45	0	1	428620	+		17206	13769	10666	10718	17476	17476					0.02410711679851829
ICQSWVGQI	9	Unmodified	_ICQSWVGQI_					0	0	0		HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|43|3|anti-sense	HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|43|3|anti-sense	HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|43|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2614135742188	2	517.260402	1032.50625	0.36301	0.00018777	3.2046	0.0016576	3.5676	0.0018454	517.2621788426349	30.446	0.14751	30.446	30.391	30.539	0					8	5	2	0	0	0	0.22377	1	9722	9722		58.782	0.55203	1	43987			17207	11197	10667	10719	17477	17477					-0.008701724629190721
ICRKLKLH	8	Unmodified	_ICRKLKLH_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|62|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|62|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|62|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.8202819824219	2	505.818221	1009.62189	2.9347	0.0014844	0.55664	0.00028156	3.4914	0.001766	505.8185393383171	12.045	0.090957	12.045	12	12.091	0					4	2	2	0	0	0	0.78999	1	2481	2481		13.775	0.81615	1	131260			17208	11297	10668	10720	17478	17478					0.11746396178580198
ICSLCKHLK	9	Unmodified	_ICSLCKHLK_					0	0	0		ENSG00000226761|ENST00000533467|TAS2R46;TAS2R30|p.M209V|1|0.39|ENSG00000256188|chr12:11133620-11133620|T/C|missense_variant;ENSG00000212126|ENST00000506868|TAS2R50;ENSG00000212124|ENST00000390673|TAS2R19;ENSG00000256436|ENST00000390675|TAS2R31;ENSG00000255374|ENST00000531678|TAS2R43;ENSG00000256188|ENST00000539585|TAS2R30	ENSG00000226761|ENST00000533467|TAS2R46	ENSG00000226761|ENST00000533467|TAS2R46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7901611328125	2	522.788272	1043.56199	1.7979	0.0009399	2.6685	0.0013951	4.4664	0.002335	522.7895457321549	44.268	0.21288	44.268	44.213	44.425	0					14	11	2	0	0	0	0.22377	1	17254	17254		58.782	0	1	61880			17209	7878	10669	10721	17479	17479					0.04195337453029424
ICSQEVNY	8	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))SQEVNY_	IC(1)SQEVNY		IC(82)SQEVNY		0	1	0			REV__nc|ENSG00000124222|O14662-6|STX16	REV__nc|ENSG00000124222|O14662-6|STX16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.7239990234375	2	506.723849	1011.43315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.263	1	34.263	33.763	34.763	0								0	0	0	1.7419	1	11197	11197		82.305	8.05	1		+		17210	14385	10670	10722	17480	17480	535				-0.0721134597620221
ICTAIALFQT	10	Unmodified	_ICTAIALFQT_					0	0	0		GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant;ENSG00000158292|ENST00000377893|GPR153	GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant	GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7940063476562	2	540.791535	1079.56852	1.3928	0.00075324	3.2447	0.0017547	4.6376	0.002508	540.7932787222478	24.818	0.16158	24.818	24.712	24.873	0					6	3	2	0	0	0	0.49411	1	8741	8741		45.972	1.5951	1	203900			17211	5254	10671	10723	17481	17481					0.03191553885403664
ICTRLRVF	8	Unmodified	_ICTRLRVF_					0	0	0		ENST00000196371.9_1_5:41731773-41731827:-|nuORF	ENST00000196371.9_1_5:41731773-41731827:-|nuORF	ENST00000196371.9_1_5:41731773-41731827:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343933105469	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.188	1	36.188	35.688	36.688	0								0	0	0	1.7419	1	14039	14039		25.574	0	1				17212	8150	10672	10724	17482	17482					0.0715811690757846
ICTYPFVF	8	Unmodified	_ICTYPFVF_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2454528808594	2	495.243689	988.472826	2.8381	0.0014056	0.28266	0.00013999	3.1208	0.0015456	495.2439956916603	38.765	0.54964	38.765	38.56	39.11	0					26	11	4	0	0	0	0.61433	1	15258	15258		46.766	2.2354	1	1017600			17213	4845	10673	10725	17483	17483					-0.02187174234836675
ICVCVRFR	8	Unmodified	_ICVCVRFR_					0	0	0		ENST00000473798.1_1_1:762658-762772:-|nuORF	ENST00000473798.1_1_1:762658-762772:-|nuORF	ENST00000473798.1_1_1:762658-762772:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.5137939453125	3	332.514097	994.520461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.511	1	18.511	18.011	19.011	0								0	0	0	1.7419	1	4617	4617		17.365	0	1				17214	9880	10674	10726	17484	17484					0.022982014843705656
ICVEGKVPIY	10	Unmodified	_ICVEGKVPIY_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.8080444335938	2	560.807185	1119.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.573	1	39.573	39.073	40.073	0								0	0	0	0.37293	1	13294	13294		34.173	0	1		+		17215	13474	10675	10727	17485	17485					0.04480126919497707
ICVVVMNNIL	10	Unmodified	_ICVVVMNNIL_					0	0	0		PIP5K1C|p.R234C|1|0.51|ENSG00000186111|chr19:3653511-3653511|G/A|missense_variant	PIP5K1C|p.R234C|1|0.51|ENSG00000186111|chr19:3653511-3653511|G/A|missense_variant	PIP5K1C|p.R234C|1|0.51|ENSG00000186111|chr19:3653511-3653511|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098388671875	3	373.208451	1116.60352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.621	1	46.621	46.121	47.121	0								0	0	0	0.4201	1	18649	18649		16.717	0.18753	1				17216	11935	10676	10728	17486	17486					0.049884734217130244
ICWKNLSI	8	Unmodified	_ICWKNLSI_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7688903808594	2	488.767863	975.521173	2.605	0.0012733	-0.37176	-0.0001817	2.2333	0.0010916	488.7675767526871	28.733	0.51812	28.733	28.624	29.143	0					18	10	3	0	0	0	0.44433	1	10457	10457		65.803	65.803	1	1139500			17217	7337	10677	10729	17487	17487					0.032433194050668135
IDAGMLNVLPQ	11	Unmodified	_IDAGMLNVLPQ_					0	0	0		ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.8140258789062	2	585.812999	1169.61144	3.2068	0.0018786	-2.4069	-0.00141	0.79985	0.00046856	585.8115636216424	46.422	0.23001	46.422	46.321	46.551	0					15	10	2	0	0	0	0.68382	1	18582	18582		29.17	2.374	1	50246			17218	7081	10678	10730	17488	17488					0.03342323942820258
IDANYTDY	8	Unmodified	_IDANYTDY_					0	0	0			REV__ENSG00000129038|ENST00000261921|LOXL1	REV__ENSG00000129038|ENST00000261921|LOXL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7109680175781	2	487.708722	973.402892	3.5062	0.00171	0.96779	0.000472	4.474	0.002182	487.7093328455706	19.985	0.46191	19.985	19.881	20.343	0					38	15	3	0	0	0	0.44433	1	5490	5490		65.803	2.4969	1	613970	+		17219	14537	10679	10731	17489	17489					-0.08487381369775449
IDASVERVV	9	Unmodified	_IDASVERVV_					0	0	0		tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1	tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1	tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2790832519531	2	494.277106	986.53966	2.8	0.001384	0.23442	0.00011587	3.0344	0.0014998	494.2775666602705	35.89	1.4659	35.89	34.897	36.362	0					59	29	3	0	0	0	0.39215	1	14014	14014		42.396	0	1	3925000			17220	22932	10680	10732	17490	17490					0.04585152580625618
IDCLGIVLE	9	Carbamidomethyl (C)	_IDC(Carbamidomethyl (C))LGIVLE_	IDC(1)LGIVLE		IDC(85)LGIVLE		0	1	0		nc|ENSG00000169507|Q08AI6-2|SLC38A11;SLC38A11|p.I320Yfs*12|1|0.39|ENSG00000169507|chr2:164898700-164898701|-/A|frameshift_variant;nc|ENSG00000169507|Q08AI6|SLC38A11;ENSG00000169507|ENST00000685975|SLC38A11	nc|ENSG00000169507|Q08AI6-2|SLC38A11	nc|ENSG00000169507|Q08AI6-2|SLC38A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.275146484375	2	516.275718	1030.53688	1.2415	0.00064097	-1.0389	-0.00053638	0.20258	0.00010459	516.275235324414	35.231	0.27878	35.231	35.115	35.394	0					16	7	3	0	0	0	0.0792	1	13174	13174		84.916	13.038	1	283860			17221	6168	10681	10733	17491	17491	260				0.022835611314576454
IDDNSNGTY	9	Unmodified	_IDDNSNGTY_					0	0	0		KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K1164Rfs*17|1|0.4|ENSG00000055609|chr7:152222008-152222009|TT/-|frameshift_variant;KMT2C|p.K1247Nfs*56|1|0.22|ENSG00000055609|chr7:152207400-152207400|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7061767578125	2	499.706711	997.398869	-2.1567	-0.0010777	0.62285	0.00031124	-1.5339	-0.00076649	499.7070445746634	36.624	0.22195	36.624	36.529	36.751	0					20	10	3	0	0	0	0.39215	1	13101	13101		42.396	3.59	1	83698			17222	1282	10682	10734	17492	17492					-0.09993470863469156
IDEASIAVHI	10	Unmodified	_IDEASIAVHI_					0	0	0			REV__ENSG00000101384|ENST00000254958|JAG1	REV__ENSG00000101384|ENST00000254958|JAG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.79248046875	2	534.290214	1066.56587	0.19262	0.00010291	0.79951	0.00042717	0.99212	0.00053008	534.2904725709036	37.548	0.17635	37.548	37.472	37.649	0					15	9	2	0	0	0	0.7005	1	12682	12682		21.96	1.9631	1	106760	+		17223	13603	10683	10735	17493	17493					0.03525421752101465
IDEDRSNLVL	10	Unmodified	_IDEDRSNLVL_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3090209960938	2	587.309135	1172.60372	1.4374	0.0008442	-0.77367	-0.00045438	0.66373	0.00038981	587.3086989734409	33.284	0.27184	33.284	33.176	33.448	0					18	6	4	0	0	0	0.3337	1	12714	12714		63.534	3.3669	1	615030	+		17224	16632	10684	10736	17494	17494					0.02431887946909228
IDEEMLQK	8	Oxidation (M)	_IDEEM(Oxidation (M))LQK_		IDEEM(1)LQK		IDEEM(56)LQK	0	0	1		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2483215332031	2	511.247157	1020.47976	3.0833	0.0015763	-0.50395	-0.00025764	2.5794	0.0013187	511.2469111349574	16.673	0.26485	16.673	16.515	16.78	0					9	5	3	0	0	0	0.54629	1	4654	4654		55.504	55.504	1	877360			17225	2816	10685	10737	17495	17495		120			-0.02965906144913788
IDEIVHNKL	9	Unmodified	_IDEIVHNKL_					0	0	0			REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF;REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.80908203125	2	540.806031	1079.59751	3.5023	0.0018941	0.9734	0.00052642	4.4757	0.0024205	540.8065944559557	42.02	0.35127	42.02	41.906	42.257	0					19	9	3	0	0	0	0.36892	1	16714	16714		44.377	0	1	673500	+		17226	12981;12951	10686	10738	17496	17496					0.060894145060501614
IDEQSMDTVEM	11	Unmodified	_IDEQSMDTVEM_					0	0	0			REV__CCDC88A|p.T678Hfs*8|1|0.16|ENSG00000115355|chr2:55334789-55334789|T/-|frameshift_variant	REV__CCDC88A|p.T678Hfs*8|1|0.16|ENSG00000115355|chr2:55334789-55334789|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	649.2685546875	2	649.267961	1296.52137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.679	1	21.679	21.179	22.179	0								0	0	0	0.45674	1	6262	6262		9.1829	1.9896	1		+		17227	12368	10687	10739	17497	17497					-0.11503138238595056
IDFGKRGENF	10	Unmodified	_IDFGKRGENF_					0	0	0			REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant	REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.7984008789062	2	591.798737	1181.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.141	1	37.141	36.641	37.641	0								0	0	0	0.30913	1	14494	14494		49.442	3.4693	1		+		17228	12027	10688	10740	17498	17498					-0.0006065764209779445
IDFPARAI	8	Unmodified	_IDFPARAI_					0	0	0		ENSG00000115392|ENST00000233741|FANCL;nc|ENSG00000115392|Q9NW38-2|FANCL	ENSG00000115392|ENST00000233741|FANCL	ENSG00000115392|ENST00000233741|FANCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7575988769531	2	451.758352	901.502152	-0.40796	-0.0001843	-1.2982	-0.00058649	-1.7062	-0.00077079	451.75755779572216	39.892	0.32852	39.892	39.752	40.08	0					10	7	2	0	0	0	0.63077	1	15790	15790		44.117	3.5442	1	52755			17229	2903	10689	10741	17499	17499					0.0474610610565378
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000203879|ENST00000447750|GDI1	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.22711181640625	2	437.226885	872.439217	0.2431	0.00010629	0.10065	4.4008E-05	0.34376	0.0001503	437.2269463392876	38.228	0.14265	38.228	38.148	38.291	0					12	8	2	0	0	0	0.60719	1	12472	12472		47.916	5.4411	1	50530			17230	1296;7661	10690	10742	17500	17500					-0.0021045968237558554
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000203879|ENST00000447750|GDI1	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.22686767578125	2	437.226885	872.439217	0.62463	0.0002731	-0.78091	-0.00034144	-0.15628	-6.8332E-05	437.22648306039656	38.532	0.31416	38.532	38.429	38.743	0					23	12	3	0	0	0	0.25001	1	14639	14639		101.21	32.727	1	419400			17231	1296;7661	10690	10742	17501	17501					-0.0021045968237558554
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000203879|ENST00000447750|GDI1	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2269287109375	2	437.226885	872.439217	-0.92003	-0.00040226	0.5773	0.00025241	-0.34273	-0.00014985	437.2271564013024	38.289	0.17375	38.289	38.226	38.399	0					15	9	2	0	0	0	0.60719	1	12911	12911		47.916	0	1	108720			17232	1296;7661	10690	10742	17502	17502					-0.0021045968237558554
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000203879|ENST00000447750|GDI1	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2268981933594	2	437.226885	872.439217	0.72885	0.00031867	-0.73365	-0.00032077	-0.0047992	-2.0984E-06	437.22658601842585	38.509	0.32379	38.509	38.415	38.739	0					25	11	3	0	0	0	0.41952	1	15089	15089		68.485	10.673	1	623370			17233	1296;7661	10690	10742	17503	17503					-0.0021045968237558554
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000203879|ENST00000447750|GDI1	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2268981933594	2	437.226885	872.439217	-0.55863	-0.00024425	0.16225	7.094E-05	-0.39638	-0.00017331	437.22697912281507	38.457	0.24445	38.457	38.366	38.61	0					8	5	2	0	0	0	0.28158	1	15112	15112		88.643	20.158	1	224940			17234	1296;7661	10690	10742	17504	17504					-0.0021045968237558554
IDFVTAIAF	9	Unmodified	_IDFVTAIAF_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-3|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.77032470703125	2	498.773668	995.532783	0.2589	0.00012913	-2.9384	-0.0014656	-2.6795	-0.0013365	498.77239028808214	28.265	0.53773	28.265	27.956	28.493	0					38	18	3	0	0	0	0.27249	1	8708	8708		55.504	7.5886	1	320880			17235	3735	10691	10743	17505	17505					0.03483839700038516
IDGRVKHK	8	Unmodified	_IDGRVKHK_					0	0	0			REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7872314453125	2	476.787976	951.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.232	1	15.232	14.732	15.732	0								0	0	0	1.7419	1	3890	3890		51.335	5.3835	1		+		17236	13202	10692	10744	17506	17506					0.08368002119846096
IDIGGFKK	8	Unmodified	_IDIGGFKK_					0	0	0			REV__ENSG00000119471|ENST00000398805|HSDL2	REV__ENSG00000119471|ENST00000398805|HSDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.26080322265625	2	439.260728	876.506903	0.20726	9.1039E-05	-0.50032	-0.00021977	-0.29306	-0.00012873	439.26050274633883	32.254	0.29222	32.254	32.109	32.401	0					12	6	3	0	0	0	0.46905	1	12234	12234		63.306	0.32785	1	415610	+		17237	14243	10693	10745	17507	17507					0.06370990248422004
IDIKGKDVY	9	Unmodified	_IDIKGKDVY_					0	0	0		tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7942504882812	2	525.795132	1049.57571	1.1839	0.00062251	-0.74059	-0.0003894	0.44336	0.00023311	525.7947876664628	33.005	0.2301	33.005	32.927	33.157	0					13	7	2	0	0	0	0.17854	1	11532	11532		64.207	5.4253	1	323690			17238	22723	10694	10746	17508	17508					0.052906097574805244
IDIKGPSL	8	Unmodified	_IDIKGPSL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7523193359375	2	421.752736	841.490919	1.0201	0.00043024	-1.2843	-0.00054167	-0.26419	-0.00011142	421.7522575355471	37.155	0.36522	37.155	36.864	37.23	0					14	10	2	0	0	0	0.25143	1	14056	14056		98.629	13.714	1	77483			17239	3401	10695	10747	17509	17509					0.06383284011531032
IDINSKKI	8	Unmodified	_IDINSKKI_					0	0	0		tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.78411865234375	2	465.784567	929.554582	0.67032	0.00031222	-1.3379	-0.00062318	-0.66759	-0.00031095	465.78383179934576	13.784	0.15377	13.784	13.735	13.889	0					7	3	3	0	0	0	0.2678	1	3445	3445		93.195	5.4412	1	413750			17240	22990	10696	10748	17510	17510					0.08698644448600135
IDKDVIVAL	9	Unmodified	_IDKDVIVAL_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.3001403808594	2	493.30005	984.585547	0.6257	0.00030866	-1.2694	-0.00062619	-0.6437	-0.00031754	493.29950048453964	36.964	0.33539	36.964	36.831	37.167	0					22	10	3	0	0	0	0.38666	1	14408	14408		35.618	0	1	540250			17241	7438	10697	10749	17511	17511					0.09263797762855575
IDKKRRRK	8	Unmodified	_IDKKRRRK_					0	0	0			REV__LOXHD1|p.E34Sfs*64|1|0.27|ENSG00000167210|chr18:46656934-46656934|C/-|frameshift_variant	REV__LOXHD1|p.E34Sfs*64|1|0.27|ENSG00000167210|chr18:46656934-46656934|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.24468994140625	3	367.243874	1098.70979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.371	1	16.371	15.871	16.871	0								0	0	0	1.7419	1	3869	3869		21.96	2.8564	1		+		17242	16175	10698	10750	17512	17512					0.1643873309353694
IDKNTAAKL	9	Unmodified	_IDKNTAAKL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2698059082031	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.57	1	26.57	26.07	27.07	0								0	0	0	0.21054	1	8574	8574		49.442	3.4896	1		+		17243	14609	10699	10751	17513	17513					0.0730174296027144
IDKTLVNKV	9	Unmodified	_IDKTLVNKV_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3212280273438	2	515.318774	1028.623	3.2464	0.0016729	0.5647	0.000291	3.8111	0.0019639	515.3192293810332	48.469	0.14825	48.469	48.387	48.535	0					18	8	3	0	0	0	0.61124	1	19257	19257		19.997	19.997	1	95567			17244	7269	10700	10752	17514	17514					0.1098288902846889
IDKTTAAF	8	Unmodified	_IDKTTAAF_					0	0	0		ENST00000474635.1_2_6:34730443-34740721:+|nuORF;ENSG00000124562|ENST00000244520|SNRPC	ENST00000474635.1_2_6:34730443-34740721:+|nuORF	ENST00000474635.1_2_6:34730443-34740721:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.7347412109375	2	433.734543	865.454533	-0.45696	-0.0001982	0.11873	5.1496E-05	-0.33823	-0.0001467	433.7346595114293	27.031	0.16163	27.031	26.927	27.089	0					5	3	2	0	0	0	0.30437	1	9737	9737		82.305	13.82	1	112240			17245	3383	10701	10753	17515	17515					0.0164240711480943
IDKTTAAF	8	Unmodified	_IDKTTAAF_					0	0	0		ENST00000474635.1_2_6:34730443-34740721:+|nuORF;ENSG00000124562|ENST00000244520|SNRPC	ENST00000474635.1_2_6:34730443-34740721:+|nuORF	ENST00000474635.1_2_6:34730443-34740721:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.7347106933594	2	433.734543	865.454533	-0.5039	-0.00021856	0.79485	0.00034475	0.29095	0.00012619	433.73488065711734	26.961	0.21808	26.961	26.852	27.07	0					8	4	2	0	0	0	0.58597	1	9605	9605		51.335	3.4199	1	242080			17246	3383	10701	10753	17516	17516					0.0164240711480943
IDKYTEVL	8	Unmodified	_IDKYTEVL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.76873779296875	2	490.768583	979.522613	0.8178	0.00040135	0.56978	0.00027963	1.3876	0.00068098	490.7691151743164	35.642	0.19347	35.642	35.569	35.763	0					12	5	3	0	0	0	0.53424	1	13406	13406		56.721	0	1	337880			17247	4497	10702	10754	17517	17517					0.03203231974816845
IDKYTEVL	8	Unmodified	_IDKYTEVL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.77117919921875	2	490.768583	979.522613	-0.097659	-4.7928E-05	2.0886	0.001025	1.991	0.00097711	490.7696855177191	35.42	0.20181	35.42	35.351	35.553	0					12	7	2	0	0	0	0.48092	1	12609	12609		62.107	1.8135	1	204160			17248	4497	10702	10754	17518	17518					0.03203231974816845
IDKYTEVL	8	Unmodified	_IDKYTEVL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7685546875	2	490.768583	979.522613	0.78573	0.00038561	0.30318	0.00014879	1.0889	0.0005344	490.7687282393801	35.577	0.31774	35.577	35.466	35.784	0					12	6	2	0	0	0	0.27635	1	13755	13755		90.37	26.163	1	2398900			17249	4497	10702	10754	17519	17519					0.03203231974816845
IDLAGLLQ	8	Unmodified	_IDLAGLLQ_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.75244140625	2	421.752736	841.490919	1.0542	0.0004446	-1.2335	-0.00052023	-0.17934	-7.5637E-05	421.7521046111017	37.06	0.50656	37.06	36.664	37.171	0					20	10	3	0	0	0	0.30437	1	14450	14450		82.305	5.4584	1	233280			17250	3426	10703	10755	17520	17520					0.06383284011531032
IDLGSFLKR	9	Unmodified	_IDLGSFLKR_					0	0	0			REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.20989990234375	3	350.209836	1047.60768	0.69939	0.00024493	-0.48269	-0.00016904	0.2167	7.5892E-05	350.20963101773367	30.274	0.57458	30.274	30.05	30.624	0					30	14	4	0	0	0	0.61124	1	10882	10882		11.636	0	1	662510	+		17251	22177	10704	10756	17521	17521					0.08578022231290561
IDLHIGEFY	9	Unmodified	_IDLHIGEFY_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.28076171875	2	553.779482	1105.54441	0.61384	0.00033993	0.19689	0.00010903	0.81073	0.00044896	553.7795577591054	42.764	0.3609	42.764	42.666	43.027	0					42	18	3	0	0	0	0.41354	1	16156	16156		40.573	1.3198	1	265670	+		17252	16648	10705	10757	17522	17522					-0.004139632766282375
IDLHKEAIE	9	Unmodified	_IDLHKEAIE_					0	0	0			REV__ACTN2|p.F256Lfs*20|1|0.38|ENSG00000077522|chr1:236735702-236735702|T/-|frameshift_variant	REV__ACTN2|p.F256Lfs*20|1|0.38|ENSG00000077522|chr1:236735702-236735702|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2899780273438	2	534.290214	1066.56587	3.3807	0.0018063	-2.4721	-0.0013208	0.90857	0.00048544	534.2884729717564	37.684	0.73992	37.684	37.332	38.072	0					32	15	5	0	0	0	0.2873	1	14810	14810		51.335	5.3835	1	1978600	+		17253	12056	10706	10758	17523	17523					0.03525421752078728
IDLLLISH	8	Unmodified	_IDLLLISH_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;CPSF3|p.L74S|1|0.27|ENSG00000119203|chr2:9430760-9430760|T/C|missense_variant	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2815856933594	2	462.28166	922.548768	0.80144	0.00037049	-1.466	-0.00067772	-0.66458	-0.00030723	462.2808869509697	47.22	0.13665	47.22	47.122	47.259	0					7	5	2	0	0	0	0.29152	1	18868	18868		85.359	3.0545	1	88900			17254	3101	10707	10759	17524	17524					0.08439545936960258
IDLLLISH	8	Unmodified	_IDLLLISH_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;CPSF3|p.L74S|1|0.27|ENSG00000119203|chr2:9430760-9430760|T/C|missense_variant	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2817077636719	2	462.28166	922.548768	2.5664	0.0011864	-3.2327	-0.0014944	-0.6663	-0.00030802	462.28036484531947	47.196	0.11122	47.196	47.142	47.253	0					8	4	2	0	0	0	0.37378	1	18860	18860		73.975	2.679	1	74766			17255	3101	10707	10759	17525	17525					0.08439545936960258
IDLSKAAPF	9	Unmodified	_IDLSKAAPF_					0	0	0			REV__ENSG00000172053|ENST00000306125|QARS1	REV__ENSG00000172053|ENST00000306125|QARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.27093505859375	2	481.271293	960.528032	0.68542	0.00032987	-0.96854	-0.00046613	-0.28313	-0.00013626	481.2707311139233	39.042	0.42003	39.042	38.866	39.286	0					38	14	4	0	0	0	0.30951	1	15294	15294		49.442	3.4896	1	943250	+		17256	16447	10708	10760	17526	17526					0.04618955557270965
IDNAGRDI	8	Unmodified	_IDNAGRDI_					0	0	0			REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.22662353515625	2	437.224874	872.435195	2.6736	0.001169	1.5355	0.00067136	4.2092	0.0018403	437.22555901966035	38.429	0.29262	38.429	38.334	38.627	0					14	6	3	0	0	0	0.41701	1	15117	15117		68.787	2.9837	1	552970	+		17257	21868	10709	10761	17527	17527					-0.006125491761054036
IDNIATLQL	9	Unmodified	_IDNIATLQL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7876892089844	2	500.787307	999.560061	-0.5999	-0.00030042	1.0658	0.00053375	0.46593	0.00023333	500.78786559042993	35.714	0.2928	35.714	35.591	35.884	0					12	8	2	0	0	0	0.38666	1	13883	13883		42.864	0	1	72942			17258	5134;23079	10710	10762	17528	17528					0.06026323240439524
IDNLFLSL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IDNLFLSL_					1	0	0			REV__nc|ENSG00000159885|Q9UK12|ZNF222	REV__nc|ENSG00000159885|Q9UK12|ZNF222	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7691955566406	2	488.771126	975.527698	-1.2504	-0.00061116	-2.8862	-0.0014107	-4.1366	-0.0020218	488.7696799001892	28.494	0.19596	28.494	28.43	28.626	0					15	7	3	0	0	0	0.46013	1	9201	9201		63.306	9.9548	1	206240	+		17259	15731	10711	10763	17529	17529					0.03895535837432362
IDNVSKGK	8	Unmodified	_IDNVSKGK_					0	0	0			REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1	REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7449645996094	2	430.745442	859.476331	-2.8566	-0.0012305	1.6655	0.00071741	-1.1911	-0.00051307	430.74639650823536	18.371	0.14824	18.371	18.29	18.439	0					6	4	2	0	0	0	0.6088	1	4789	4789		47.657	4.7931	1	60531	+		17260	21861	10712	10764	17530	17530					0.04097211863393113
IDPHYVGG	8	Unmodified	_IDPHYVGG_					0	0	0			REV__ENST00000477450.1_1_1:165619084-165623023:+|nuORF	REV__ENST00000477450.1_1_1:165619084-165623023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2121276855469	2	429.211235	856.407917	0.82028	0.00035207	3.312	0.0014216	4.1323	0.0017736	429.2122204748223	36.6	0.18934	36.6	36.496	36.685	0					7	5	2	0	0	0	0.74117	1	13829	13829		28.254	1.4582	1	46823	+		17261	19551	10713	10765	17531	17531					-0.026030327164676237
IDPLLTRELGL	11	Unmodified	_IDPLLTRELGL_					0	0	0			REV__ENST00000464490.1_1_22:24985500-24985914:-|nuORF	REV__ENST00000464490.1_1_22:24985500-24985914:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3701171875	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.34	1	29.34	28.84	29.84	0								0	0	0	0.45674	1	10853	10853		12.812	0	1		+		17262	16718	10714	10766	17532	17532					0.11362501291455374
IDQEEINQP	9	Unmodified	_IDQEEINQP_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7603149414062	2	543.259111	1084.50367	2.0206	0.0010977	3.1599	0.0017166	5.1805	0.0028143	543.2626580796142	37.729	0.31618	37.729	37.591	37.908	0					14	10	2	0	0	0	0.47473	1	14805	14805		35.152	3.6222	1	51272	+		17263	16632	10715	10767	17533	17533					-0.03520349386917587
IDQIQFRL	8	Unmodified	_IDQIQFRL_					0	0	0			REV__ENSG00000070182|ENST00000644917|SPTB;REV__nc|ENSG00000173898|O15020-2|SPTBN2;REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7953491210938	2	516.795466	1031.57638	1.2635	0.00065299	-1.482	-0.00076587	-0.21841	-0.00011287	516.7944473628238	31.944	0.41529	31.944	31.735	32.151	0					20	10	3	0	0	0	0.6088	1	11674	11674		29.15	0	1	202750	+		17264	13170;16538;14106	10716	10768	17534	17534					0.06185449197187154
IDQLEPIEA	9	Unmodified	_IDQLEPIEA_					0	0	0			REV__TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant	REV__TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2683715820312	2	514.268947	1026.52334	-0.18483	-9.5053E-05	-0.20715	-0.00010653	-0.39198	-0.00020158	514.2689660764528	36.049	0.34058	36.049	35.944	36.285	0					26	15	3	0	0	0	0.33044	1	12185	12185		47.657	6.8792	1	342310	+		17265	14401	10717	10769	17535	17535					0.011140266238726326
IDQNVEKK	8	Unmodified	_IDQNVEKK_					0	0	0			REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2690734863281	2	487.269281	972.52401	-0.34424	-0.00016774	-0.89036	-0.00043385	-1.2346	-0.00060158	487.26932283422644	21.863	0.26491	21.863	21.766	22.031	0					18	6	5	0	0	0	0.43813	1	7047	7047		66.429	8.1994	1	1506900	+		17266	12115	10718	10770	17536	17536					0.03664866063570571
IDQPEVAVY	9	Unmodified	_IDQPEVAVY_					0	0	0		ZDBF2|p.T1000Qfs*3|1|0.17|ENSG00000204186|chr2:206307522-206307522|A/-|frameshift_variant;ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant;ZDBF2|p.L2270*|1|0.42|ENSG00000204186|chr2:206311334-206311334|T/-|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2	ZDBF2|p.T1000Qfs*3|1|0.17|ENSG00000204186|chr2:206307522-206307522|A/-|frameshift_variant	ZDBF2|p.T1000Qfs*3|1|0.17|ENSG00000204186|chr2:206307522-206307522|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2645874023438	2	517.263665	1032.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.979	1	35.979	35.479	36.479	0								0	0	0	0.29774	1	12850	12850		35.618	5.1146	1				17267	7680	10719	10771	17537	17537					-0.00217956030564892
IDQVKQIFP	9	Unmodified	_IDQVKQIFP_					0	0	0			REV__ENSG00000065600|ENST00000261455|PACC1	REV__ENSG00000065600|ENST00000261455|PACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.3207397460938	2	544.310949	1086.60735	0.37168	0.00020231	0.27524	0.00014982	0.64692	0.00035213	544.3112763930749	37.512	0.47418	37.512	37.316	37.79	0					45	14	5	0	0	0	0.22377	1	14161	14161		58.782	5.8453	1	412380	+		17268	13118	10720	10772	17538	17538					0.06750602511442594
IDQYKLNEI	9	Unmodified	_IDQYKLNEI_					0	0	0			REV__tr|U7T063|U7T063_FUSNURibonucleasePproteincomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnpAPE=3SV=1	REV__tr|U7T063|U7T063_FUSNURibonucleasePproteincomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnpAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.3035278320312	2	568.303321	1134.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.341	1	46.341	45.841	46.841	0								0	0	0	0.14211	1	17825	17825		61.691	5.2575	1		+		17269	22052	10721	10773	17539	17539					0.030176909235706262
IDRKPQLQ	8	Unmodified	_IDRKPQLQ_					0	0	0			REV__ENST00000253233.5_1_12:123717606-123717849:+|nuORF	REV__ENST00000253233.5_1_12:123717606-123717849:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2924499511719	2	499.293091	996.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.998	1	44.998	44.498	45.498	0								0	0	0	1.7419	1	16801	16801		71.296	4.8664	1		+		17270	17972	10722	10774	17540	17540					0.07320565054419603
IDSPRKATY	9	Unmodified	_IDSPRKATY_					0	0	0			REV__FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	REV__FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7837524414062	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.934	1	49.934	49.434	50.434	0								0	0	0	0.35377	1	19734	19734		24.519	0.31644	1		+		17271	14136	10723	10775	17541	17541					0.027765549549030766
IDSQFNLY	8	Unmodified	_IDSQFNLY_					0	0	0			REV__CSMD3|p.L2190Yfs*46|1|0.29|ENSG00000164796|chr8:112341560-112341560|A/-|frameshift_variant	REV__CSMD3|p.L2190Yfs*46|1|0.29|ENSG00000164796|chr8:112341560-112341560|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2440490722656	2	500.242732	998.470912	1.0882	0.00054439	2.6974	0.0013494	3.7857	0.0018938	500.24397462180303	45.649	0.19099	45.649	45.566	45.757	0					11	7	2	0	0	0	0.58597	1	18295	18295		51.335	0	1	73495	+		17272	12639	10724	10776	17542	17542					-0.028385117190964593
IDSQLLNVL	9	Unmodified	_IDSQLLNVL_					0	0	0			REV__NCOA6|p.P1168Tfs*41|1|0.1|ENSG00000198646|chr20:34742754-34742755|-/T|frameshift_variant	REV__NCOA6|p.P1168Tfs*41|1|0.1|ENSG00000198646|chr20:34742754-34742755|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.79541015625	2	507.795132	1013.57571	-1.9105	-0.00097014	1.6657	0.00084585	-0.24476	-0.00012429	507.796279668126	34.084	0.1455	34.084	34.015	34.161	0					7	4	2	0	0	0	0.38666	1	12038	12038		42.864	0	1	141100	+		17273	17413	10725	10777	17543	17543					0.06946609757483202
IDSRRRLE	8	Unmodified	_IDSRRRLE_					0	0	0		ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	ENST00000520550.1_1_5:67588878-67591317:+|nuORF	ENST00000520550.1_1_5:67588878-67591317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8010864257812	2	522.799072	1043.58359	3.4085	0.001782	-0.3465	-0.00018115	3.062	0.0016008	522.7987971510698	33.424	0.4688	33.424	33.215	33.684	0					35	9	5	0	0	0	0.39125	1	12667	12667		71.877	71.877	1	8798200			17274	4681	10726	10778	17544	17544					0.06354181797632918
IDSTSALR	8	Unmodified	_IDSTSALR_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.7348327636719	2	431.735074	861.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.277	1	19.277	18.777	19.777	0								0	0	0	1.7419	1	5203	5203		42.474	1.9018	1		+		17275	13070	10727	10779	17545	17545					0.019326214837178668
IDSTVGEHR	9	Unmodified	_IDSTVGEHR_					0	0	0		nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2562561035156	2	507.254163	1012.49377	3.8066	0.0019309	0.51227	0.00025985	4.3189	0.0021908	507.25439926599205	30.36	0.20393	30.36	30.287	30.491	0					16	6	3	0	0	0	0.30951	1	9957	9957		49.442	7.0454	1	422300			17276	1305	10728	10780	17546	17546					-0.011974926016137033
IDTDLRNPK	9	Unmodified	_IDTDLRNPK_					0	0	0			REV__NYNRIN|p.G1206Vfs*50|1|0.1|ENSG00000205978|chr14:24415362-24415362|G/-|frameshift_variant	REV__NYNRIN|p.G1206Vfs*50|1|0.1|ENSG00000205978|chr14:24415362-24415362|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.29345703125	2	536.293288	1070.57202	1.8373	0.00098534	-1.2802	-0.00068657	0.55711	0.00029877	536.2923711987077	40.47	0.15577	40.47	40.441	40.597	0					9	6	2	0	0	0	0.17854	1	15952	15952		64.207	3.2353	1	117420	+		17277	17537	10729	10781	17547	17547					0.039559399836207376
IDTELEGR	8	Unmodified	_IDTELEGR_					0	0	0		nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	nc|ENSG00000116962|P14543-2|NID1	nc|ENSG00000116962|P14543-2|NID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7376403808594	2	466.737814	931.461075	0.2516	0.00011743	-0.78042	-0.00036425	-0.52882	-0.00024682	466.73749108663316	30.867	0.15053	30.867	30.754	30.905	0					5	3	2	0	0	0	0.44433	1	11161	11161		65.803	7.5733	1	75770			17278	3015	10730	10782	17548	17548					-0.007396997244654813
IDVCPGPIR	9	Unmodified	_IDVCPGPIR_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2657165527344	2	485.262945	968.511337	0.65349	0.00031712	3.7553	0.0018223	4.4088	0.0021394	485.2648024869467	27.557	0.59688	27.557	27.209	27.805	0					24	14	2	0	0	0	0.30951	1	9668	9668		49.442	3.4896	1	135100			17279	8090	10731	10783	17549	17549					0.025821313996971185
IDVDHRNMA	9	Unmodified	_IDVDHRNMA_					0	0	0		ENSG00000174469|ENST00000361727|CNTNAP2;CNTNAP2|p.H1113Pfs*52|1|0.35|ENSG00000174469|chr7:148229731-148229732|-/C|frameshift_variant	ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7565307617188	2	535.756015	1069.49748	0.29162	0.00015624	0.074824	4.0088E-05	0.36645	0.00019633	535.7562096275373	11.086	0.14684	11.086	10.979	11.126	0					8	5	2	0	0	0	0.61124	1	2183	2183		17.365	0	1	103330			17280	581	10732	10784	17550	17550					-0.03449146099410427
IDVGDVILK	9	Unmodified	_IDVGDVILK_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2935485839844	2	486.292225	970.569897	0.69067	0.00033587	0.26673	0.00012971	0.9574	0.00046558	486.2929717593197	34.357	0.59692	34.357	34.105	34.702	0					34	15	3	0	0	0	0.24095	1	12808	12808		56.721	1.9447	1	198530			17281	5584	10733	10785	17551	17551					0.08343511245823265
IDVIIEKIKD	10	Unmodified	_IDVIIEKIKD_					0	0	0			REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.3588256835938	2	593.358096	1184.70164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.509	1	38.509	38.009	39.009	0								0	0	0	0.4201	1	15111	15111		22.58	1.6327	1		+		17282	22032	10734	10786	17552	17552					0.11667696542872363
IDVKVTSM	8	Unmodified	_IDVKVTSM_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.7433776855469	2	446.744053	891.473554	0.14113	6.3051E-05	-0.60236	-0.0002691	-0.46123	-0.00020605	446.74357079080414	33.407	0.10475	33.407	33.338	33.442	0					5	3	2	0	0	0	0.4668	1	10868	10868		63.534	21.138	1	57977			17283	4950	10735	10787	17553	17553					0.023476204142184542
IDVKVTSM	8	Unmodified	_IDVKVTSM_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.7440185546875	2	446.744053	891.473554	0.60625	0.00027084	-1.2582	-0.0005621	-0.65197	-0.00029127	446.7436204050582	33.662	0.17146	33.662	33.58	33.752	0					12	4	3	0	0	0	0.41	1	12466	12466		69.628	10.846	1	287850			17284	4950	10735	10787	17554	17554					0.023476204142184542
IDVKVTSM	8	Unmodified	_IDVKVTSM_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.7439270019531	2	446.744053	891.473554	-0.14382	-6.425E-05	-0.43317	-0.00019352	-0.57699	-0.00025777	446.7439327991076	33.659	0.16303	33.659	33.575	33.738	0					6	4	2	0	0	0	0.24383	1	12909	12909		112.41	24.657	1	143080			17285	4950	10735	10787	17555	17555					0.023476204142184542
IDVKVTSM	8	Unmodified	_IDVKVTSM_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.7439270019531	2	446.744053	891.473554	-0.43668	-0.00019508	0.067356	3.0091E-05	-0.36932	-0.00016499	446.7440804229021	33.608	0.16669	33.608	33.549	33.716	0					5	3	2	0	0	0	0.25987	1	12804	12804		95.815	34.843	1	297630			17286	4950	10735	10787	17556	17556					0.023476204142184542
IDVWGELTI	9	Unmodified	_IDVWGELTI_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H;REV__CACNA1G|p.R516Gfs*48|1|0.26|ENSG00000006283|chr17:50575943-50575943|C/-|frameshift_variant	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2837524414062	2	523.281857	1044.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.945	1	37.945	37.445	38.445	0								0	0	0	0.073265	1	14877	14877		79.451	10.664	1		+		17287	17269;12314	10736	10788	17557	17557					0.028669208661540324
IDYNTGGML	9	Unmodified	_IDYNTGGML_					0	0	0		tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2283630371094	2	492.228768	982.442982	0.79267	0.00039018	-1.0199	-0.00050202	-0.22721	-0.00011184	492.2287024362661	30.173	0.40354	30.173	29.933	30.337	0					19	10	3	0	0	0	0.45358	1	10865	10865		37.159	1.5408	1	187330			17288	22702	10737	10789	17558	17558					-0.04894157970829838
IDYVLLVGQ	9	Unmodified	_IDYVLLVGQ_					0	0	0			REV__RAB28|p.L145Gfs*37|2|0.22|ENSG00000157869|chr4:13381550-13381553|GTAA/-|frameshift_variant	REV__RAB28|p.L145Gfs*37|2|0.22|ENSG00000157869|chr4:13381550-13381553|GTAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2920227050781	2	510.292225	1018.5699	0.28465	0.00014525	-0.05932	-3.0271E-05	0.22533	0.00011498	510.2923474295584	33.451	0.25063	33.451	33.33	33.58	0					14	6	3	0	0	0	0.45358	1	11720	11720		37.159	0	1	260480	+		17289	15670	10738	10790	17559	17559					0.061355112458159056
IEAAIIKN	8	Unmodified	_IEAAIIKN_					0	0	0			REV__tr|U7SMT3|U7SMT3_FUSNUGlyceroluptakeoperonantiterminatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01812PE=4SV=1	REV__tr|U7SMT3|U7SMT3_FUSNUGlyceroluptakeoperonantiterminatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01812PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.26556396484375	2	436.26601	870.517468	-0.27638	-0.00012057	-0.35553	-0.00015511	-0.63191	-0.00027568	436.2657983613355	34.341	0.10203	34.341	34.3	34.402	0					9	5	2	0	0	0	0.29152	1	11225	11225		85.359	22.053	1	71352	+		17290	21796	10739	10791	17560	17560					0.07702972902859528
IEAALRESL	9	Unmodified	_IEAALRESL_					0	0	0		nc|ENSG00000112576|P30281-2|CCND3;ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-4|CCND3;nc|ENSG00000112576|P30281-3|CCND3	nc|ENSG00000112576|P30281-2|CCND3	nc|ENSG00000112576|P30281-2|CCND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2852783203125	2	501.284931	1000.55531	-0.97227	-0.00048738	1.3078	0.00065558	0.33554	0.0001682	501.285417810354	34.452	0.14582	34.452	34.379	34.525	0					11	6	2	0	0	0	0.40353	1	11623	11623		41.427	0.64845	1	116680			17291	2747	10740	10792	17561	17561					0.05505439097669296
IEAALRESL	9	Unmodified	_IEAALRESL_					0	0	0		nc|ENSG00000112576|P30281-2|CCND3;ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-4|CCND3;nc|ENSG00000112576|P30281-3|CCND3	nc|ENSG00000112576|P30281-2|CCND3	nc|ENSG00000112576|P30281-2|CCND3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.28533935546875	2	501.284931	1000.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.388	1	34.388	33.888	34.888	0								0	0	0	0.17415	1	12167	12167		54.722	3.3869	1				17292	2747	10740	10792	17562	17562					0.05505439097669296
IEAEKIAQV	9	Unmodified	_IEAEKIAQV_					0	0	0		ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7867431640625	2	500.787307	999.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.159	1	31.159	30.659	31.659	0								0	0	0	0.0095889	1	11315	11315		110.12	3.1124	1				17293	2487	10741	10793	17563	17563					0.060263232404167866
IEAEKIAQV	9	Unmodified	_IEAEKIAQV_					0	0	0		ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7874755859375	2	500.787307	999.560061	0.020659	1.0346E-05	0.35639	0.00017848	0.37705	0.00018882	500.7874958555848	31.1	0.20471	31.1	30.997	31.202	0					11	4	3	0	0	0	0.04067	1	11706	11706		98.582	21.264	1	275270			17294	2487	10741	10793	17564	17564					0.060263232404167866
IEAEKIAQV	9	Unmodified	_IEAEKIAQV_					0	0	0		ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7870788574219	2	500.787307	999.560061	-0.6262	-0.00031359	0.14133	7.0778E-05	-0.48487	-0.00024282	500.7873746049689	31.085	0.16295	31.085	30.978	31.141	0					7	3	3	0	0	0	0.14578	1	11594	11594		68.846	6.7387	1	248190			17295	2487	10741	10793	17565	17565					0.060263232404167866
IEAEKVAQV	9	Unmodified	_IEAEKVAQV_					0	0	0		ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.77935791015625	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.582	1	27.582	27.082	28.082	0								0	0	0	0.17415	1	9652	9652		54.722	13.944	1				17296	4783	10742	10794	17566	17566					0.05106036723384477
IEAGVTAATYT	11	Unmodified	_IEAGVTAATYT_					0	0	0		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7794189453125	2	548.779679	1095.5448	1.6153	0.00088646	-1.3815	-0.00075811	0.23387	0.00012834	548.7788580045903	32.315	0.12326	32.315	32.233	32.356	0					8	5	2	0	0	0	0.64562	1	10440	10440		32.812	2.4947	1	66329			17297	5219	10743	10795	17567	17567					0.0008541165254882799
IEAINGQSL	9	Unmodified	_IEAINGQSL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7555236816406	2	472.756007	943.497461	0.63368	0.00029958	-1.3185	-0.00062332	-0.68479	-0.00032374	472.7551237444631	38.686	0.30928	38.686	38.577	38.886	0					13	6	3	0	0	0	0.12278	1	15241	15241		74.165	12.058	1	611140			17298	3305	10744	10796	17568	17568					0.023451771722420744
IEAKDRIP	8	Unmodified	_IEAKDRIP_					0	0	0		ENSG00000197912|ENST00000645818|SPG7;nc|ENSG00000197912|Q9UQ90-2|SPG7;ENST00000564047.1_1_16:89590622-89596095:+|nuORF	ENSG00000197912|ENST00000645818|SPG7	ENSG00000197912|ENST00000645818|SPG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.27398681640625	2	471.274367	940.53418	-0.60558	-0.00028539	0.071463	3.3679E-05	-0.53412	-0.00025172	471.27438944922454	31.327	0.41608	31.327	31.157	31.573	0					18	10	2	0	0	0	0.70598	1	11383	11383		32.812	0.85756	1	211190			17299	7507	10745	10797	17569	17569					0.061534737887996016
IEALLHTV	8	Unmodified	_IEALLHTV_					0	0	0		ENST00000492264.1_1_7:65615923-65617341:+|nuORF;nc|ENSG00000241258|O75575-4|CRCP;nc|ENSG00000241258|O75575-2|CRCP;nc|ENSG00000241258|O75575-3|CRCP;ENSG00000241258|ENST00000395326|CRCP	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2655944824219	2	448.26601	894.517468	0.6159	0.00027609	-0.9382	-0.00042056	-0.3223	-0.00014447	448.2654583342151	37.611	0.15476	37.611	37.525	37.68	0					7	4	2	0	0	0	0.49216	1	14262	14262		60.972	0	1	92696			17300	7937	10746	10798	17570	17570					0.06598972902850164
IEALLHTV	8	Unmodified	_IEALLHTV_					0	0	0		ENST00000492264.1_1_7:65615923-65617341:+|nuORF;nc|ENSG00000241258|O75575-4|CRCP;nc|ENSG00000241258|O75575-2|CRCP;nc|ENSG00000241258|O75575-3|CRCP;ENSG00000241258|ENST00000395326|CRCP	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.26556396484375	2	448.26601	894.517468	-0.097397	-4.366E-05	0.6408	0.00028725	0.5434	0.00024359	448.2662011021505	37.59	0.17504	37.59	37.498	37.673	0					8	5	2	0	0	0	0.25102	1	14700	14700		99.375	8.5983	1	67709			17301	7937	10746	10798	17571	17571					0.06598972902850164
IEALLHTV	8	Unmodified	_IEALLHTV_					0	0	0		ENST00000492264.1_1_7:65615923-65617341:+|nuORF;nc|ENSG00000241258|O75575-4|CRCP;nc|ENSG00000241258|O75575-2|CRCP;nc|ENSG00000241258|O75575-3|CRCP;ENSG00000241258|ENST00000395326|CRCP	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2658386230469	2	448.26601	894.517468	-0.40958	-0.0001836	0.0049557	2.2215E-06	-0.40462	-0.00018138	448.26610847900406	37.527	0.21	37.527	37.417	37.627	0					7	4	2	0	0	0	0.24915	1	14689	14689		102.77	8.7669	1	155620			17302	7937	10746	10798	17572	17572					0.06598972902850164
IEALVRTV	8	Unmodified	_IEALVRTV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.779296875	2	450.779285	899.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.429	1	33.429	32.929	33.929	0								0	0	0	1.7419	1	12706	12706		70.816	10.413	1				17303	6049	10747	10799	17573	17573					0.09022661794176656
IEAPIRMM	8	Unmodified	_IEAPIRMM_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.75341796875	2	480.753898	959.493244	0.51435	0.00024728	-1.0645	-0.00051176	-0.55014	-0.00026448	480.7535837208081	39.773	0.18922	39.773	39.702	39.891	0					11	7	2	0	0	0	0.5676	1	15146	15146		53.351	3.3269	1	88523			17304	7591	10748	10800	17574	17574					0.011876731533220664
IEAPIRMM	8	Unmodified	_IEAPIRMM_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7532958984375	2	480.753898	959.493244	-0.10925	-5.2521E-05	-0.3811	-0.00018321	-0.49034	-0.00023573	480.75366638006113	39.726	0.18822	39.726	39.656	39.844	0					9	6	2	0	0	0	0.65148	1	15636	15636		40.778	8.8233	1	62959			17305	7591	10748	10800	17575	17575					0.011876731533220664
IEAQLGDVRA	10	Unmodified	_IEAQLGDVRA_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000405746.1_1_6:72295335-72295494:+|nuORF;ENST00000557173.1_1_12:95228580-95228931:+|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.294189453125	2	536.293288	1070.57202	2.1601	0.0011585	-1.6437	-0.00088148	0.51649	0.00027699	536.2928014220842	32.688	0.29362	32.688	32.583	32.876	0					11	7	2	0	0	0	0.2602	1	12033	12033		72.096	13.866	1	161720		+	17306	635	10749	10801	17576	17576					0.039559399836207376
IEASKLPK	8	Unmodified	_IEASKLPK_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.27392578125	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.159	1	34.159	33.659	34.659	0								0	0	0	1.7419	1	11154	11154		82.305	2.5924	1				17307	7364	10750	10802	17577	17577					0.08623259419903206
IEASKLPK	8	Unmodified	_IEASKLPK_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.27374267578125	2	443.273835	884.533118	-0.10914	-4.8378E-05	0.38924	0.00017254	0.2801	0.00012416	443.27401484202477	34.434	0.1762	34.434	34.345	34.521	0					7	4	2	0	0	0	0.24806	1	12816	12816		104.75	11.551	1	178420			17308	7364	10750	10802	17578	17578					0.08623259419903206
IEATGIAVHAL	11	Unmodified	_IEATGIAVHAL_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8143920898438	2	547.813856	1093.61316	1.8115	0.00099238	-0.75817	-0.00041534	1.0534	0.00057705	547.8134122799605	38.985	0.10453	38.985	38.919	39.024	0					5	3	2	0	0	0	0.33911	1	15327	15327		58.782	30.9	1	113410			17309	1357	10751	10803	17579	17579					0.07009701023071102
IEATKQYAL	9	Unmodified	_IEATKQYAL_					0	0	0		nc|ENSG00000095585|Q8WV28-2|BLNK;ENSG00000095585|ENST00000224337|BLNK	nc|ENSG00000095585|Q8WV28-2|BLNK	nc|ENSG00000095585|Q8WV28-2|BLNK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.787109375	2	518.787307	1035.56006	1.3578	0.00070442	-1.1529	-0.00059812	0.2049	0.0001063	518.786547456968	30.616	0.18844	30.616	30.526	30.714	0					6	4	2	0	0	0	0.22837	1	11051	11051		58.23	8.6939	1	159580			17310	1905	10752	10804	17580	17580					0.04370323240414109
IEAVQLAI	8	Unmodified	_IEAVQLAI_					0	0	0		tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.76605224609375	2	428.760561	855.506569	-0.24152	-0.00010355	2.2913	0.00098241	2.0498	0.00087886	428.76125706065085	34.169	0.67375	34.169	33.773	34.447	0					48	20	3	0	0	0	0.41701	1	11935	11935		68.787	2.9837	1	596800			17311	22624	10753	10805	17581	17581					0.07303570528563341
IECVNPKEV	9	Unmodified	_IECVNPKEV_					0	0	0			REV__ENST00000263464.7_1_11:102193411-102193507:+|nuORF	REV__ENST00000263464.7_1_11:102193411-102193507:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.765869140625	2	515.765517	1029.51648	-1.5324	-0.00079038	1.5401	0.00079434	0.007688	3.9652E-06	515.7663773200519	20.668	0.27485	20.668	20.463	20.738	0					17	6	4	0	0	0	0.30951	1	5827	5827		49.442	5.0644	1	333840	+		17312	18047	10754	10806	17582	17582					0.0029039047165042575
IECVQQGIEL	10	Unmodified	_IECVQQGIEL_					0	0	0			REV__ENST00000361951.4_1_1:173793856-173793928:+|nuORF	REV__ENST00000361951.4_1_1:173793856-173793928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.2891235351562	2	566.289356	1130.56416	1.2009	0.00068008	-2.8183	-0.001596	-1.6174	-0.00091589	566.2879323511426	29.282	0.085157	29.282	29.231	29.316	0					5	3	2	0	0	0	0.36432	1	9235	9235		47.96	3.8427	1	40537	+		17313	18577	10755	10807	17583	17583					0.00410044671821197
IEDKKQELL	9	Unmodified	_IEDKKQELL_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.5482482910156	3	372.548406	1114.62339	-1.045	-0.0003893	0.7101	0.00026455	-0.33486	-0.00012475	372.5487037803922	24.021	0.1665	24.021	23.96	24.126	0					8	5	2	0	0	0	0.39215	1	7303	7303		58.23	1.7961	1	224520			17314	3266	10756	10808	17584	17584					0.0706626395767671
IEDKSPGK	8	Unmodified	_IEDKSPGK_					0	0	0		ENST00000340487.4_1_6:28092425-28093244:+|nuORF	ENST00000340487.4_1_6:28092425-28093244:+|nuORF	ENST00000340487.4_1_6:28092425-28093244:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2375793457031	2	437.23745	872.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.489	1	23.489	22.989	23.989	0								0	0	0	1.7419	1	7784	7784		51.335	5.3835	1				17315	8728	10757	10809	17585	17585					0.01901505626483413
IEDRLTKK	8	Unmodified	_IEDRLTKK_					0	0	0			REV__MTR|p.D198*|1|0.22|ENSG00000116984|chr1:236812821-236812822|-/T|frameshift_variant	REV__MTR|p.D198*|1|0.22|ENSG00000116984|chr1:236812821-236812822|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.8009948730469	2	501.800749	1001.58694	-0.043567	-2.1862E-05	0.40379	0.00020262	0.36022	0.00018076	501.8008003418036	15.601	0.082709	15.601	15.541	15.624	0					5	3	2	0	0	0	0.49216	1	3428	3428		60.972	0	1	74312	+		17316	14173	10758	10810	17586	17586					0.08621431851599937
IEEERQDLT	9	Unmodified	_IEEERQDLT_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7781372070312	2	566.777667	1131.54078	1.9289	0.0010932	-0.49235	-0.00027905	1.4365	0.0008142	566.7774100423021	40.332	0.60237	40.332	40.048	40.65	0					37	23	2	0	0	0	0.2873	1	15953	15953		51.335	3.6781	1	117100			17317	2989	10759	10811	17587	17587					-0.019726778411495616
IEEFKDERNDE	11	Unmodified	_IEEFKDERNDE_					0	0	0			REV__tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1	REV__tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2176513671875	3	475.216044	1422.6263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.179	1	20.179	19.679	20.679	0								0	0	0	0.33523	1	5625	5625		47.228	4.8896	1		+		17318	21953	10760	10812	17588	17588					-0.06810557446146959
IEEMKGRCF	9	Unmodified	_IEEMKGRCF_					0	0	0			REV__nc|ENSG00000130540|Q9BR01-2|SULT4A1	REV__nc|ENSG00000130540|Q9BR01-2|SULT4A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.7637329101562	2	556.764994	1111.51544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.83	1	38.83	38.33	39.33	0								0	0	0	0.24724	1	14765	14765		44.117	1.7207	1		+		17319	14583	10761	10813	17589	17589					-0.03586147168903153
IEEMYQRESPM	11	Unmodified	_IEEMYQRESPM_					0	0	0			REV__nc|ENSG00000162779|Q5T1B0-2|AXDND1	REV__nc|ENSG00000162779|Q5T1B0-2|AXDND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	706.811279296875	2	706.81287	1411.61119	-2.6863	-0.0018987	0.22282	0.00015749	-2.4635	-0.0017412	706.8127537319189	18.262	0.62065	18.262	17.992	18.612	0					22	14	3	0	0	0	0.53842	1	5219	5219		41.427	0	1	1448400	+		17320	12265	10762	10814	17590	17590					-0.07815463839324366
IEENMNIAI	9	Unmodified	_IEENMNIAI_					0	0	0		ENSG00000170967|ENST00000302259|DDI1	ENSG00000170967|ENST00000302259|DDI1	ENSG00000170967|ENST00000302259|DDI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.762939453125	2	523.762975	1045.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.418	1	24.418	23.918	24.918	0								0	0	0	0.29774	1	7610	7610		35.618	1.4457	1				17321	6272	10763	10815	17591	17591					-0.009539133909811426
IEEQKSTPK	9	Unmodified	_IEEQKSTPK_					0	0	0			REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.285400390625	2	530.287671	1058.56079	0.4332	0.00022972	-3.5266	-0.0018701	-3.0934	-0.0016404	530.7864165670015	30.273	0.13658	30.273	30.186	30.323	0					7	4	2	0	0	0	0.41113	1	9643	9643		40.778	17.736	1	62046	+		17322	15520	10764	10816	17592	17592					0.03385117889456524
IEESKFIWQ	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IEESKFIWQ_					1	0	0			REV__ENST00000470197.5_1_2:75923388-75923421:-|nuORF	REV__ENST00000470197.5_1_2:75923388-75923421:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.3101806640625	2	611.311146	1220.60774	-0.77416	-0.00047325	-1.7396	-0.0010634	-2.5137	-0.0015367	611.3101934167503	23.043	0.21557	23.043	22.918	23.134	0					12	5	3	0	0	0	0.13267	1	7563	7563		71.877	18.789	1	336580	+		17323	19463	10765	10817	17593	17593					0.006259774406316865
IEESLRIS	8	Unmodified	_IEESLRIS_					0	0	0		tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.763671875	2	473.763832	945.513111	-0.019178	-9.0856E-06	0.039055	1.8503E-05	0.019877	9.4172E-06	473.76390885965424	30.367	0.1679	30.367	30.292	30.46	0					12	6	2	0	0	0	0.53424	1	9673	9673		56.721	5.5284	1	127140			17324	23038	10766	10818	17594	17594					0.03817463689279066
IEESRQLL	8	Unmodified	_IEESRQLL_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A;ENST00000557013.1_1_14:55168817-55201659:+|nuORF;ENST00000555112.1_1_14:55034634-55169324:+|nuORF;ENSG00000179134|ENST00000610417|SAMD4B	nc|ENSG00000020577|Q9UPU9-2|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2771301269531	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.787	1	32.787	32.287	33.287	0								0	0	0	1.7419	1	10963	10963		60.972	7.6205	1				17325	1101;6759	10767	10819	17595	17595					0.045851525806369864
IEFGHASTMI	10	Oxidation (M)	_IEFGHASTM(Oxidation (M))I_		IEFGHASTM(1)I		IEFGHASTM(42)I	0	0	1			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.2677001953125	2	561.268424	1120.5223	1.2767	0.00071658	-2.4636	-0.0013827	-1.1869	-0.00066616	561.2657912485777	34.392	0.086113	34.392	34.357	34.443	0					7	4	2	0	0	0	0.52707	1	11245	11245		42.396	9.5837	1	46564	+		17326	21006	10768	10820	17596	17596		756			-0.03314511016696997
IEFKETQAL	9	Unmodified	_IEFKETQAL_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000485101.5_1_3:186502728-186502902:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7926635742188	2	539.792589	1077.57063	0.26029	0.0001405	0.72566	0.00039171	0.98595	0.00053221	539.792904416591	36.377	0.32121	36.377	36.274	36.595	0					16	9	2	0	0	0	0.047855	1	13705	13705		96.034	11.118	1	1238600			17327	5192	10769	10821	17597	17597					0.03494305894855643
IEFKETQAL	9	Unmodified	_IEFKETQAL_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000485101.5_1_3:186502728-186502902:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7927856445312	2	539.792589	1077.57063	-0.088475	-4.7758E-05	0.76269	0.0004117	0.67422	0.00036394	539.7928442827653	36.198	0.16088	36.198	36.119	36.279	0					13	7	3	0	0	0	0.36892	1	12251	12251		44.377	6.5657	1	190910			17328	5192	10769	10821	17598	17598					0.03494305894855643
IEFKETQAL	9	Unmodified	_IEFKETQAL_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000485101.5_1_3:186502728-186502902:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7920532226562	2	539.792589	1077.57063	0.30493	0.0001646	0.45235	0.00024418	0.75728	0.00040878	539.7926833037684	36.38	0.22961	36.38	36.302	36.532	0					14	6	3	0	0	0	0.022525	1	14154	14154		117.81	13.065	1	822210			17329	5192	10769	10821	17599	17599					0.03494305894855643
IEFKETQAL	9	Unmodified	_IEFKETQAL_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000485101.5_1_3:186502728-186502902:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.79296875	2	539.792589	1077.57063	-1.4782	-0.0007979	2.2653	0.0012228	0.78716	0.0004249	539.7936178301501	36.155	0.19086	36.155	36.06	36.251	0					11	6	2	0	0	0	0.095583	1	12933	12933		80.455	1.0036	1	191130			17330	5192	10769	10821	17600	17600					0.03494305894855643
IEFSDKESV	9	Unmodified	_IEFSDKESV_					0	0	0		ENSG00000258643|ENST00000678502|BCL2L2-PABPN1;ENST00000391782.2_1_X:70640109-70640352:-|nuORF;nc|ENSG00000100836|Q86U42-2|PABPN1;ENSG00000100836|ENST00000216727|PABPN1;nc|ENSG00000258643|Q92843-2|BCL2L2	ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2583618164062	2	527.258579	1052.50261	0.34077	0.00017967	-0.58724	-0.00030963	-0.24647	-0.00012995	527.2579995694607	32.109	0.097828	32.109	32.047	32.145	0					7	4	2	0	0	0	0.21263	1	10694	10694		60.118	12.461	1	80935			17331	8037	10770	10822	17601	17601					-0.021545637557892405
IEFSDKESV	9	Unmodified	_IEFSDKESV_					0	0	0		ENSG00000258643|ENST00000678502|BCL2L2-PABPN1;ENST00000391782.2_1_X:70640109-70640352:-|nuORF;nc|ENSG00000100836|Q86U42-2|PABPN1;ENSG00000100836|ENST00000216727|PABPN1;nc|ENSG00000258643|Q92843-2|BCL2L2	ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2591552734375	2	527.258579	1052.50261	1.7571	0.00092646	-0.93893	-0.00049506	0.8182	0.0004314	527.2579411974071	32.284	0.34011	32.284	32.032	32.372	0					14	7	3	0	0	0	0.21419	1	12263	12263		59.931	15.4	1	472640			17332	8037	10770	10822	17602	17602					-0.021545637557892405
IEGEKTVTV	9	Unmodified	_IEGEKTVTV_					0	0	0			REV__CLSTN1|p.N221Tfs*5|2|0.36|ENSG00000171603|chr1:9749901-9749901|T/-|frameshift_variant	REV__CLSTN1|p.N221Tfs*5|2|0.36|ENSG00000171603|chr1:9749901-9749901|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.27142333984375	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.33	1	28.33	27.83	28.83	0								0	0	0	0.095784	1	10250	10250		72.879	5.3856	1		+		17333	12515	10771	10823	17603	17603					0.04014330486484141
IEGFYQVDR	9	Unmodified	_IEGFYQVDR_					0	0	0			REV__ENSG00000131400|ENST00000253719|NAPSA	REV__ENSG00000131400|ENST00000253719|NAPSA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.781982421875	2	563.780013	1125.54547	3.4715	0.0019572	-3.0634	-0.0017271	0.40809	0.00023008	563.7801415197262	38.434	0.2934	38.434	38.283	38.577	0					16	6	5	0	0	0	0.16002	1	15099	15099		66.429	11.653	1	565150	+		17334	14623	10772	10824	17604	17604					-0.012277489077177961
IEGKVVSSL	9	Unmodified	_IEGKVVSSL_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2766418457031	2	466.276575	930.538597	0.80939	0.0003774	-0.14044	-6.5483E-05	0.66895	0.00031192	466.2764478070752	29.97	0.13807	29.97	29.879	30.017	0					8	5	2	0	0	0	0.02953	1	9500	9500		109.48	30.027	1	82677			17335	3808	10773	10825	17605	17605					0.07054938211717854
IEGKVVSSL	9	Unmodified	_IEGKVVSSL_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2768249511719	2	466.276575	930.538597	0.22959	0.00010705	0.16024	7.4714E-05	0.38983	0.00018177	466.27661656923596	30.241	0.21492	30.241	30.139	30.354	0					11	5	3	0	0	0	0.0097668	1	10886	10886		141.52	45.33	1	354370			17336	3808	10773	10825	17606	17606					0.07054938211717854
IEGPIIKL	8	Unmodified	_IEGPIIKL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.L1362I|1|0.23|ENSG00000101596|chr18:2750426-2750426|C/A|missense_variant;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.7864990234375	2	441.786579	881.558604	0.73349	0.00032405	-1.2887	-0.00056935	-0.55525	-0.0002453	441.785993916586	42.625	0.2347	42.625	42.511	42.746	0					9	6	2	0	0	0	0.46905	1	17016	17016		63.306	2.3343	1	175930			17337	2131	10774	10826	17607	17607					0.11308733942325944
IEGTKAVLE	9	Unmodified	_IEGTKAVLE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.S2859Qfs*30|1|0.21|ENSG00000155657|chr2:178770127-178770127|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2737731933594	2	480.274032	958.533512	-0.64453	-0.00030955	0.21268	0.00010215	-0.43184	-0.0002074	480.27408312332517	28.666	0.26875	28.666	28.558	28.826	0					14	5	4	0	0	0	0.063171	1	10423	10423		90.601	6.9538	1	1179000			17338	5134;11594;23079;11595	10775	10827	17608	17608					0.05258634349104341
IEGVTHAL	8	Unmodified	_IEGVTHAL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.2342529296875	2	420.23471	838.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.998	1	28.998	28.498	29.498	0								0	0	0	1.7419	1	9111	9111		33.516	3.0119	1				17339	4092	10776	10828	17609	17609					0.029178268346640834
IEGVTHAL	8	Unmodified	_IEGVTHAL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.2342224121094	2	420.23471	838.454868	1.0614	0.00044604	-1.7459	-0.00073369	-0.6845	-0.00028765	420.2340821728753	29.288	0.21098	29.288	29.207	29.418	0					8	5	2	0	0	0	0.37378	1	10438	10438		73.975	2.679	1	291960			17340	4092	10776	10828	17610	17610					0.029178268346640834
IEGVTHAL	8	Unmodified	_IEGVTHAL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.2345275878906	2	420.23471	838.454868	-0.061956	-2.6036E-05	-0.43409	-0.00018242	-0.49605	-0.00020846	420.23461174193517	29.286	0.23345	29.286	29.162	29.396	0					10	5	3	0	0	0	0.25485	1	10823	10823		97.473	12.113	1	173690			17341	4092	10776	10828	17611	17611					0.029178268346640834
IEGVTHAL	8	Unmodified	_IEGVTHAL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.2344055175781	2	420.23471	838.454868	-0.3112	-0.00013078	-0.38587	-0.00016216	-0.69707	-0.00029293	420.23458789022595	29.215	0.2148	29.215	29.109	29.324	0					9	4	3	0	0	0	0.44433	1	10688	10688		65.803	4.8312	1	430550			17342	4092	10776	10828	17612	17612					0.029178268346640834
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.7861938476562	2	541.785099	1081.55564	1.0866	0.00058868	-0.2501	-0.0001355	0.83646	0.00045318	541.784896662526	38.646	0.33121	38.646	38.543	38.874	0					38	19	3	0	0	0	0.22377	1	12580	12580		58.782	5.4305	1	580550			17343	2493	10777	10829	17613	17613					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.78515625	2	541.785099	1081.55564	0.30018	0.00016263	0.58443	0.00031663	0.8846	0.00047926	541.7853981280805	38.974	1.0827	38.974	38.836	39.919	0					73	40	4	0	0	0	0.16002	1	14793	14793		66.429	5.4573	1	2616600			17344	2493	10777	10829	17614	17614					0.01812858817538654
IEHGQAVSL	9	Unmodified	_IEHGQAVSL_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000506744.1_1_5:65372690-65374355:+|nuORF	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2558898925781	2	477.256174	952.497795	0.64145	0.00030614	-1.2378	-0.00059073	-0.5963	-0.00028459	477.2555686604418	27.609	0.15864	27.609	27.506	27.665	0					11	3	4	0	0	0	0.085655	1	10013	10013		82.75	18.543	1	2110800			17345	2764	10778	10830	17615	17615					0.019645968920940504
IEHGQAVSL	9	Unmodified	_IEHGQAVSL_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000506744.1_1_5:65372690-65374355:+|nuORF	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.25592041015625	2	477.256174	952.497795	0.82203	0.00039232	-0.78479	-0.00037454	0.037239	1.7772E-05	477.2555592034575	27.551	0.22011	27.551	27.441	27.662	0					13	4	4	0	0	0	0.18416	1	9884	9884		63.534	10.182	1	1767200			17346	2764	10778	10830	17616	17616					0.019645968920940504
IEHLIGKKL	9	Unmodified	_IEHLIGKKL_					0	0	0		DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant	DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.8937683105469	3	350.893848	1049.65972	0.4958	0.00017397	-1.5536	-0.00054514	-1.0578	-0.00037117	350.89312229046396	23.686	0.49768	23.686	23.592	24.09	0					26	11	4	0	0	0	0.35021	1	7885	7885		45.972	11.8	1	1157000			17347	762	10779	10831	17617	17617					0.1368718564503979
IEHLIGKKL	9	Unmodified	_IEHLIGKKL_					0	0	0		DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant	DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.893798828125	3	350.893848	1049.65972	0.50883	0.00017855	-0.30796	-0.00010806	0.20087	7.0483E-05	350.8937203687527	23.662	0.26831	23.662	23.578	23.847	0					10	5	3	0	0	0	0.15163	1	8185	8185		67.494	26.067	1	350490			17348	762	10779	10831	17618	17618					0.1368718564503979
IEHLIGKKL	9	Unmodified	_IEHLIGKKL_					0	0	0		DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant	DDX47|p.R377H|1|0.32|ENSG00000213782|chr12:12827269-12827269|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8938293457031	3	350.893848	1049.65972	3.0377	0.0010659	-3.4189	-0.0011997	-0.3812	-0.00013376	350.8927842611278	23.611	0.41329	23.611	23.501	23.914	0					18	8	4	0	0	0	0.12834	1	8042	8042		72.879	14.649	1	1678500			17349	762	10779	10831	17619	17619					0.1368718564503979
IEHQVIHSA	9	Unmodified	_IEHQVIHSA_					0	0	0			REV__ZNF573|p.R238I|1|0.25|ENSG00000189144|chr19:37739777-37739777|C/A|missense_variant	REV__ZNF573|p.R238I|1|0.25|ENSG00000189144|chr19:37739777-37739777|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2750854492188	2	517.274898	1032.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.905	1	16.905	16.405	17.405	0								0	0	0	0.35507	1	4106	4106		24.203	0	1		+		17350	22329	10780	10832	17620	17620					0.020276881577274253
IEIEKGEAV	9	Unmodified	_IEIEKGEAV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2718505859375	2	494.27149	986.528426	-0.046684	-2.3075E-05	0.73723	0.00036439	0.69055	0.00034132	494.2718500206385	29.171	0.15592	29.171	29.07	29.226	0					5	3	2	0	0	0	0.11898	1	10781	10781		75.043	8.614	1	253800			17351	6541	10781	10833	17621	17621					0.03462330486479459
IEILSMSK	8	Unmodified	_IEILSMSK_					0	0	0			REV__ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant	REV__ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7596130371094	2	460.759704	919.504854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.951	1	33.951	33.451	34.451	0								0	0	0	1.7419	1	13040	13040		60.972	0	1		+		17352	12073	10782	10834	17622	17622					0.04188193448317179
IEIVGGATRI	10	Unmodified	_IEIVGGATRI_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;HSPA4L|p.G575Efs*18|1|0.36|ENSG00000164070|chr4:127820470-127820470|A/-|frameshift_variant	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.8754577636719	3	343.541475	1027.60259	0.205	7.0427E-05	-0.57298	-0.00019684	-0.36798	-0.00012642	343.5412841481212	26.288	0.11479	26.288	26.213	26.328	0					6	3	2	0	0	0	0.58308	1	7960	7960		36.318	5.7488	1	122310			17353	5646	10783	10835	17623	17623					0.0898971836866167
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2945861816406	2	496.294768	990.574983	-0.35084	-0.00017412	-1.5457	-0.0007671	-1.8965	-0.00094122	496.29455035396853	36.608	0.37945	36.608	36.485	36.864	0					28	10	4	0	0	0	0.24328	1	13803	13803		113.41	28.496	1	562900			17354	4438;1447	10784	10836	17624	17624					0.07931815108440787
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.295654296875	2	496.294768	990.574983	-1.1889	-0.00059003	1.5248	0.00075677	0.33596	0.00016674	496.2953888240819	36.343	0.17679	36.343	36.26	36.436	0					17	9	3	0	0	0	0.37144	1	12309	12309		74.255	24.231	1	238970			17355	4438;1447	10784	10836	17625	17625					0.07931815108440787
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.294677734375	2	496.294768	990.574983	0.74426	0.00036937	-0.68246	-0.0003387	0.061798	3.067E-05	496.294337870486	36.569	0.29361	36.569	36.455	36.748	0					22	8	4	0	0	0	0.2498	1	14230	14230		101.6	27.346	1	1066000			17356	4438;1447	10784	10836	17626	17626					0.07931815108440787
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.294921875	2	496.294768	990.574983	0.12935	6.4198E-05	-0.51185	-0.00025403	-0.38249	-0.00018983	496.2945190720868	36.362	0.19538	36.362	36.273	36.469	0					17	8	3	0	0	0	0.48092	1	13002	13002		62.107	7.3311	1	156370			17357	4438;1447	10784	10836	17627	17627					0.07931815108440787
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2946472167969	2	496.294768	990.574983	-2.3674	-0.0011749	2.2701	0.0011266	-0.097315	-4.8297E-05	496.295733506463	36.338	0.14668	36.338	36.268	36.415	0					12	6	3	0	0	0	0.3049	1	12997	12997		82.241	25.519	1	184980			17358	4438;1447	10784	10836	17628	17628					0.07931815108440787
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2943115234375	2	496.294768	990.574983	2.8727	0.0014257	-4.3357	-0.0021518	-1.463	-0.00072608	496.29309307058253	36.504	0.41671	36.504	36.395	36.812	0					24	8	4	0	0	0	0.22624	1	14180	14180		125.81	29.624	1	1742200			17359	4438;1447	10784	10836	17629	17629					0.07931815108440787
IEKAVQSL	8	Unmodified	_IEKAVQSL_					0	0	0		ENST00000602490.1_1_1:183599580-183599799:-|nuORF;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5	ENST00000602490.1_1_1:183599580-183599799:-|nuORF	ENST00000602490.1_1_1:183599580-183599799:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2632141113281	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.071	1	26.071	25.571	26.571	0								0	0	0	0.1256	1	8947	8947		166.68	23.572	1				17360	5491	10785	10837	17630	17630					0.06458669040239329
IEKAYAQQL	9	Unmodified	_IEKAYAQQL_					0	0	0		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2;PACSIN3|p.A47T|2|0.36|ENSG00000165912|chr11:47182475-47182475|C/T|missense_variant;PACSIN2|p.R50H|1|0.36|ENSG00000100266|chr22:42893525-42893525|C/T|missense_variant;ENSG00000165912|ENST00000298838|PACSIN3	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2928466796875	2	532.292756	1062.57096	0.36086	0.00019208	0.4591	0.00024437	0.81995	0.00043646	532.2930592357004	27.897	0.14886	27.897	27.839	27.988	0					9	5	2	0	0	0	0.082776	1	8651	8651		83.647	1.4065	1	142390			17361	1992	10786	10838	17631	17631					0.04217725614716983
IEKDGYNNN	9	Unmodified	_IEKDGYNNN_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7459716796875	2	533.743628	1065.4727	3.3883	0.0018085	1.0413	0.00055578	4.4296	0.0023643	533.7440279612604	32.879	0.65921	32.879	32.387	33.046	0					39	13	4	0	0	0	0.38666	1	12386	12386		42.864	2.0861	1	673350			17362	3311	10787	10839	17632	17632					-0.0574150270113023
IEKDIAAHI	9	Unmodified	_IEKDIAAHI_					0	0	0		ENSG00000088986|ENST00000242577|DYNLL1	ENSG00000088986|ENST00000242577|DYNLL1	ENSG00000088986|ENST00000242577|DYNLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.28704833984375	2	505.287474	1008.5604	0.11715	5.9193E-05	-0.48452	-0.00024482	-0.36737	-0.00018563	505.28721101002753	27.824	0.2667	27.824	27.713	27.98	0					9	5	2	0	0	0	0.023928	1	10133	10133		115.49	27.798	1	255800			17363	1790	10788	10840	17633	17633					0.056457429602687625
IEKDINKLRK	10	Unmodified	_IEKDINKLRK_					0	0	0			REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.9290771484375	3	419.59435	1255.76122	0.11069	4.6443E-05	0.11509	4.8293E-05	0.22578	9.4736E-05	419.5943947287623	32.031	0.45619	32.031	31.847	32.303	0					23	13	3	0	0	0	0.46192	1	11047	11047		49.466	3.5577	1	169170	+		17364	22196	10789	10841	17634	17634					0.14357012276923342
IEKDINKLRK	10	Unmodified	_IEKDINKLRK_					0	0	0			REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.9287414550781	3	419.59435	1255.76122	-0.043274	-1.8157E-05	-0.044588	-1.8709E-05	-0.087862	-3.6866E-05	419.59437882159875	31.995	0.50401	31.995	31.862	32.366	0					35	14	3	0	0	0	0.58996	1	11221	11221		35.496	0.99476	1	413500	+		17365	22196	10789	10841	17635	17635					0.14357012276923342
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.277099609375	2	533.276772	1064.53899	1.7344	0.00092491	-2.4278	-0.0012947	-0.6934	-0.00036977	533.2752975997158	37.697	0.59089	37.697	37.49	38.081	0					31	18	2	0	0	0	0.056004	1	14762	14762		93.143	5.4468	1	762970			17366	6152	10790	10842	17636	17636					0.009303131409296839
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2765502929688	2	533.276772	1064.53899	1.1324	0.00060386	-0.088808	-4.7359E-05	1.0436	0.0005565	533.2765640098784	37.46	0.18406	37.46	37.371	37.555	0					15	9	2	0	0	0	0.12834	1	13420	13420		72.879	3.2516	1	75232			17367	6152	10790	10842	17637	17637					0.009303131409296839
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2771606445312	2	533.276772	1064.53899	-1.2973	-0.00069181	0.60715	0.00032378	-0.69014	-0.00036804	533.2771494186927	37.453	0.20029	37.453	37.384	37.584	0					16	10	2	0	0	0	0.12834	1	13410	13410		72.879	18.103	1	111620			17368	6152	10790	10842	17638	17638					0.009303131409296839
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.277099609375	2	533.276772	1064.53899	1.7846	0.0009517	-1.0179	-0.0005428	0.76676	0.00040889	533.2759501745184	37.633	0.53831	37.633	37.45	37.988	0					26	11	3	0	0	0	0.022525	1	14746	14746		117.81	19.182	1	974760			17369	6152	10790	10842	17639	17639					0.009303131409296839
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.27734375	2	533.276772	1064.53899	3.3961	0.001811	-3.6536	-0.0019484	-0.25753	-0.00013734	533.2750785683935	37.651	0.43932	37.651	37.535	37.974	0					17	9	2	0	0	0	0.095583	1	14738	14738		80.455	3.137	1	1302400			17370	6152	10790	10842	17640	17640					0.009303131409296839
IEKELDEKN	9	Unmodified	_IEKELDEKN_					0	0	0			REV__tr|U7SIN9|U7SIN9_FUSNUV-typeprotonATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpEPE=3SV=1	REV__tr|U7SIN9|U7SIN9_FUSNUV-typeprotonATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpEPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.2907104492188	2	559.290411	1116.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.795	1	22.795	22.295	23.295	0								0	0	0	0.1219	1	6500	6500		66.429	0.96389	1		+		17371	21714	10791	10843	17641	17641					0.012647966813119638
IEKELETVC	9	Unmodified	_IEKELETVC_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2711181640625	2	532.270632	1062.52671	2.3733	0.0012633	-0.63061	-0.00033566	1.7427	0.0009276	532.2696410459089	32.781	0.28638	32.781	32.668	32.954	0					18	7	4	0	0	0	0.19952	1	12066	12066		61.691	20.913	1	230000			17372	3531	10792	10844	17642	17642					-0.0020504659376001655
IEKELETVC	9	Unmodified	_IEKELETVC_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2708740234375	2	532.270632	1062.52671	1.7419	0.00092718	-0.11736	-6.247E-05	1.6246	0.00086471	532.2702087354911	32.724	0.36517	32.724	32.607	32.972	0					20	7	5	0	0	0	0.22823	1	12373	12373		58.246	3.4699	1	819670			17373	3531	10792	10844	17643	17643					-0.0020504659376001655
IEKELLVVC	9	Unmodified	_IEKELLVVC_					0	0	0			REV__tr|U7T2Z1|U7T2Z1_FUSNU2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispFPE=3SV=1	REV__tr|U7T2Z1|U7T2Z1_FUSNU2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispFPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.30517578125	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.496	1	49.496	48.996	49.996	0								0	0	0	0.27025	1	15494	15494		40.778	5.1599	1		+		17374	22123	10793	10845	17644	17644					0.06840724545236299
IEKFAATGPL	10	Unmodified	_IEKFAATGPL_					0	0	0			REV__nc|ENSG00000049323|Q14766-2|LTBP1	REV__nc|ENSG00000049323|Q14766-2|LTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7992553710938	2	523.797675	1045.5808	1.7574	0.0009205	-0.90354	-0.00047327	0.85382	0.00044723	523.7974167582853	26.738	0.26883	26.738	26.628	26.897	0					13	6	3	0	0	0	0.46215	1	9264	9264		49.442	0	1	300950	+		17375	13026	10794	10846	17645	17645					0.059829136200733046
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.3247680664062	2	554.324057	1106.63356	1.3122	0.00072737	-0.63764	-0.00035346	0.67454	0.00037391	554.323515930355	23	0.57005	23	22.907	23.477	0					47	17	5	0	0	0	0.017552	1	6569	6569		99.788	21.524	1	5164600			17376	5092	10795	10847	17646	17646					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.88507080078125	3	369.88513	1106.63356	0.45708	0.00016907	-0.1664	-6.1549E-05	0.29068	0.00010752	369.88493884408103	23.303	1.3265	23.303	23.123	24.45	0					87	30	4	0	0	0	0.15558	1	7680	7680		66.962	3.4281	1	24641000			17377	5092	10795	10847	17647	17647					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.324462890625	2	554.324057	1106.63356	0.60468	0.00033519	0.32455	0.00017991	0.92923	0.0005151	554.323953406153	23.303	0.7969	23.303	23.21	24.006	0					62	18	4	0	0	0	0.012127	1	7681	7681		109.83	24.669	1	18098000			17378	5092	10795	10847	17648	17648					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.3245239257812	2	554.324057	1106.63356	0.15864	8.7936E-05	0.3336	0.00018492	0.49224	0.00027286	554.3241331171768	23.068	0.57822	23.068	22.971	23.549	0					59	19	5	0	0	0	0.012127	1	6855	6855		109.83	31.566	1	5498500			17379	5092	10795	10847	17649	17649					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.3248291015625	2	554.324057	1106.63356	-0.42236	-0.00023413	1.0055	0.00055735	0.58309	0.00032322	554.3246357900234	23.063	0.19157	23.063	22.987	23.179	0					14	6	3	0	0	0	0.070127	1	6866	6866		63.426	12.234	1	388120			17380	5092	10795	10847	17650	17650					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.8851318359375	3	369.88513	1106.63356	1.0106	0.00037381	-1.3377	-0.00049481	-0.32714	-0.00012101	369.8846876332354	23.255	3.7333	23.255	23.044	26.778	0					162	73	5	0	0	0	0.27123	1	8146	8146		53.089	10.225	1	76888000			17381	5092	10795	10847	17651	17651					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.3244018554688	2	554.324057	1106.63356	-0.023812	-1.32E-05	0.73061	0.000405	0.7068	0.0003918	554.3243570953132	23.238	0.5173	23.238	23.128	23.646	0					22	10	4	0	0	0	0.0074977	1	7989	7989		120.27	21.691	1	2299800			17382	5092	10795	10847	17652	17652					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.3242797851562	2	554.324057	1106.63356	1.1374	0.00063048	-0.57119	-0.00031663	0.5662	0.00031386	554.3237712764416	23.085	0.23419	23.085	23.033	23.267	0					10	5	3	0	0	0	0.028446	1	6996	6996		84.817	21.283	1	458700			17383	5092	10795	10847	17653	17653					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.3245849609375	2	554.324057	1106.63356	1.8207	0.0010093	-0.73975	-0.00041006	1.0809	0.00059919	554.3235396918739	23.226	0.56644	23.226	23.117	23.683	0					32	11	5	0	0	0	0.0074977	1	7855	7855		120.27	32.096	1	5504900			17384	5092	10795	10847	17654	17654					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000205542|ENST00000451311|TMSB4X;ENSG00000154620|ENST00000284856|TMSB4Y;ENST00000323496.5_1_9:131104444-131104642:+|nuORF;TMSB4X|p.A8V|1|0.09|ENSG00000205542|chrX:12976284-12976284|C/T|missense_variant	ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000205542|ENST00000451311|TMSB4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.2218017578125	3	369.88513	1106.63356	3.1923	0.0011808	-3.668	-0.0013567	-0.47568	-0.00017595	369.8840625960488	23.209	1.6066	23.209	23.1	24.707	0					99	32	5	0	0	0	0.19952	1	8065	8065		61.691	10.499	1	89224000			17385	5092	10795	10847	17655	17655					0.08450871682907746
IEKHNYNK	8	Unmodified	_IEKHNYNK_					0	0	0			REV__ENSG00000141198|ENST00000575882|TOM1L1	REV__ENSG00000141198|ENST00000575882|TOM1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2750854492188	2	523.274898	1044.53524	0.47951	0.00025092	0.94795	0.00049604	1.4275	0.00074696	523.2756061173656	19.846	0.10169	19.846	19.779	19.881	0					5	3	2	0	0	0	0.7126	1	5454	5454		31.955	1.4512	1	57443	+		17386	15106	10796	10848	17656	17656					0.014756881576886371
IEKIHVRG	8	Unmodified	_IEKIHVRG_					0	0	0			REV__ENSG00000150269|ENST00000279791|OR5M9	REV__ENSG00000150269|ENST00000279791|OR5M9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.29046630859375	2	476.290351	950.566149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.614	1	21.614	21.114	22.114	0								0	0	0	1.7419	1	6233	6233		19.36	4.6959	1		+		17387	15441	10797	10849	17657	17657					0.08888886262616325
IEKKATATI	9	Unmodified	_IEKKATATI_					0	0	0		ENSG00000084463|ENST00000261167|WBP11;ENST00000412499.1_1_2:128007051-128007162:+|nuORF	ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.79736328125	2	487.797675	973.580796	-0.010508	-5.1258E-06	-0.71836	-0.00035041	-0.72886	-0.00035554	487.7974703399514	18.471	0.11047	18.471	18.392	18.503	0					9	4	3	0	0	0	0.19605	1	4603	4603		62.107	1.1355	1	180050			17388	1714	10798	10850	17658	17658					0.09294913620101397
IEKKATATI	9	Unmodified	_IEKKATATI_					0	0	0		ENSG00000084463|ENST00000261167|WBP11;ENST00000412499.1_1_2:128007051-128007162:+|nuORF	ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7977294921875	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.813	1	18.813	18.313	19.313	0								0	0	0	0.10319	1	5570	5570		70.816	7.5099	1				17389	1714	10798	10850	17659	17659					0.09294913620101397
IEKKATATI	9	Unmodified	_IEKKATATI_					0	0	0		ENSG00000084463|ENST00000261167|WBP11;ENST00000412499.1_1_2:128007051-128007162:+|nuORF	ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7973327636719	2	487.797675	973.580796	0.62638	0.00030555	-0.70326	-0.00034305	-0.076881	-3.7502E-05	487.7973550977691	18.702	0.11753	18.702	18.644	18.761	0					4	2	2	0	0	0	0.02429	1	5799	5799		114.89	47.401	1	660510			17390	1714	10798	10850	17660	17660					0.09294913620101397
IEKKATATI	9	Unmodified	_IEKKATATI_					0	0	0		ENSG00000084463|ENST00000261167|WBP11;ENST00000412499.1_1_2:128007051-128007162:+|nuORF	ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.79736328125	2	487.797675	973.580796	-2.9104	-0.0014197	2.4742	0.0012069	-0.43623	-0.00021279	487.79877383159436	18.535	0.11204	18.535	18.466	18.578	0					6	3	2	0	0	0	0.14578	1	4861	4861		68.846	10.064	1	168500			17391	1714	10798	10850	17661	17661					0.09294913620101397
IEKKLSLPS	9	Unmodified	_IEKKLSLPS_					0	0	0			REV__ENSG00000085465|ENST00000369732|OVGP1	REV__ENSG00000085465|ENST00000369732|OVGP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.81317138671875	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.063	1	40.063	39.563	40.563	0								0	0	0	0.29356	1	12974	12974		36.447	0.82846	1		+		17392	13356	10799	10851	17662	17662					0.10583486654206808
IEKKSGRLS	9	Unmodified	_IEKKSGRLS_					0	0	0		nc|ENSG00000211815|A0A075B6V5|TRAV36DV7	nc|ENSG00000211815|A0A075B6V5|TRAV36DV7	nc|ENSG00000211815|A0A075B6V5|TRAV36DV7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.3066101074219	2	509.306198	1016.59784	0.038984	1.9855E-05	0.2924	0.00014892	0.33138	0.00016878	509.30624076041425	52.375	0.2201	52.375	52.305	52.525	0					18	13	2	0	0	0	0.56424	1	15552	15552		25.574	3.8883	1	75337			17393	11745	10800	10852	17663	17663					0.09020834225918861
IEKKYDEEL	9	Unmodified	_IEKKYDEEL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.8008422851562	2	583.800611	1165.58667	0.46934	0.000274	0.093926	5.4834E-05	0.56327	0.00032884	583.8004510320854	24.612	0.3308	24.612	24.497	24.828	0					22	9	4	0	0	0	0.01077	1	7278	7278		101.46	2.8305	1	1551900			17394	4896	10801	10853	17664	17664					0.010499673411231925
IEKKYDEEL	9	Unmodified	_IEKKYDEEL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.800537109375	2	583.800611	1165.58667	0.014452	8.4371E-06	0.5099	0.00029768	0.52435	0.00030611	583.8008014705496	24.861	0.64242	24.861	24.773	25.415	0					33	15	3	0	0	0	0.0046931	1	8415	8415		120.31	7.895	1	7419600			17395	4896	10801	10853	17665	17665					0.010499673411231925
IEKKYDEEL	9	Unmodified	_IEKKYDEEL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.8008422851562	2	583.800611	1165.58667	-0.28335	-0.00016542	0.84625	0.00049404	0.56289	0.00032862	583.8009762037376	24.882	0.71525	24.882	24.677	25.392	0					31	14	5	0	0	0	0.0009224	1	8747	8747		143.37	19.294	1	5143600			17396	4896	10801	10853	17666	17666					0.010499673411231925
IEKLAVEA	8	Unmodified	_IEKLAVEA_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.7580261230469	2	436.758018	871.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.531	1	29.531	29.031	30.031	0								0	0	0	1.7419	1	10829	10829		62.107	5.3864	1				17397	5864	10802	10854	17667	17667					0.0605926666595451
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.3000793457031	2	493.30005	984.585547	0.7768	0.00038319	-1.325	-0.00065364	-0.54824	-0.00027045	493.2995163851253	39.873	0.17585	39.873	39.796	39.972	0					8	6	2	0	0	0	0.27891	1	15206	15206		53.089	5.4316	1	45113			17398	5864	10803	10855	17668	17668					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2998962402344	2	493.30005	984.585547	-0.49999	-0.00024664	0.89684	0.00044241	0.39686	0.00019577	493.3005134154807	39.878	0.25827	39.878	39.79	40.048	0					13	9	2	0	0	0	0.21222	1	15196	15196		61.691	12.155	1	151700			17399	5864	10803	10855	17669	17669					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.3006286621094	2	493.30005	984.585547	-1.2681	-0.00062553	0.44664	0.00022033	-0.82142	-0.00040521	493.3003280392641	39.628	0.19024	39.628	39.578	39.768	0					20	10	3	0	0	0	0.13907	1	13307	13307		54.722	8.7501	1	177730			17400	5864	10803	10855	17670	17670					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2998046875	2	493.30005	984.585547	0.6252	0.00030841	-0.78235	-0.00038593	-0.15714	-7.7519E-05	493.29961526157706	39.857	0.35504	39.857	39.763	40.118	0					27	12	3	0	0	0	0.031595	1	15671	15671		101.46	21.747	1	1013400			17401	5864	10803	10855	17671	17671					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.30059814453125	2	493.30005	984.585547	0.009397	4.6355E-06	-0.15157	-7.4772E-05	-0.14218	-7.0136E-05	493.30004843628035	39.658	0.18844	39.658	39.563	39.751	0					18	9	3	0	0	0	0.093587	1	14120	14120		83.647	37.19	1	126520			17402	5864	10803	10855	17672	17672					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2998046875	2	493.30005	984.585547	-2.5819	-0.0012737	2.1919	0.0010813	-0.39001	-0.00019239	493.30109805874815	39.65	0.15087	39.65	39.557	39.708	0					12	7	2	0	0	0	0.026656	1	14113	14113		106.68	29.365	1	141510			17403	5864	10803	10855	17673	17673					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2996826171875	2	493.30005	984.585547	2.7649	0.0013639	-2.967	-0.0014636	-0.20205	-9.9672E-05	493.29866926742295	39.822	0.3753	39.822	39.673	40.048	0					19	8	3	0	0	0	0.0040239	1	15753	15753		159.28	52.268	1	2312600			17404	5864	10803	10855	17674	17674					0.09263797762855575
IEKNLQLLGA	10	Unmodified	_IEKNLQLLGA_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.8295288085938	2	549.829506	1097.64446	0.33855	0.00018614	0.34581	0.00019014	0.68436	0.00037628	549.8296621467848	35.002	0.42057	35.002	34.872	35.293	0					51	18	4	0	0	0	0.065649	1	11798	11798		104.06	5.4274	1	1710200			17405	3370	10804	10856	17675	17675					0.09954274057213297
IEKPVKEAM	9	Unmodified	_IEKPVKEAM_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7918701171875	2	522.791535	1043.56852	1.5227	0.00079605	0.71057	0.00037148	2.2333	0.0011675	522.7911918464144	21.098	0.15579	21.098	20.99	21.145	0					8	4	3	0	0	0	0.15163	1	5769	5769		67.494	11.989	1	142700			17406	1058	10805	10857	17676	17676					0.048475538854063416
IEKPVKEAM	9	Unmodified	_IEKPVKEAM_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7921142578125	2	522.791535	1043.56852	1.6644	0.00087013	0.79077	0.00041341	2.4552	0.0012835	522.7912250999595	21.432	0.31359	21.432	21.311	21.624	0					18	7	4	0	0	0	0.11411	1	6825	6825		76.17	28.512	1	881940			17407	1058	10805	10857	17677	17677					0.048475538854063416
IEKPVKEAM	9	Unmodified	_IEKPVKEAM_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7921752929688	2	522.791535	1043.56852	0.45184	0.00023622	2.0292	0.0010609	2.481	0.0012971	522.7919580364097	21.342	0.21355	21.342	21.19	21.404	0					11	4	4	0	0	0	0.11898	1	6949	6949		75.043	18.322	1	711290			17408	1058	10805	10857	17678	17678					0.048475538854063416
IEKQKSVYI	9	Unmodified	_IEKQKSVYI_					0	0	0		SF3B3|p.L140S|1|0.13|ENSG00000189091|chr16:70530766-70530766|T/C|missense_variant	SF3B3|p.L140S|1|0.13|ENSG00000189091|chr16:70530766-70530766|T/C|missense_variant	SF3B3|p.L140S|1|0.13|ENSG00000189091|chr16:70530766-70530766|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.88494873046875	3	369.88513	1106.63356	3.1923	0.0011808	-3.668	-0.0013567	-0.47568	-0.00017595	369.8840625960488	23.209	1.6066	23.209	23.1	24.707	0					99	32	5	0	0	0	0.28897	1	8015	8015		51.193	10.415	1	89224000			17409	22388	10806	10858	17679	17679					0.08450871682907746
IEKQLTPAK	9	Unmodified	_IEKQLTPAK_					0	0	0			REV__ENSG00000031691|ENST00000335783|CENPQ	REV__ENSG00000031691|ENST00000335783|CENPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.310546875	2	514.310949	1026.60735	0.0017874	9.193E-07	-0.2418	-0.00012436	-0.24002	-0.00012344	514.3108784349018	25.034	0.3914	25.034	24.666	25.057	0					16	13	2	0	0	0	0.54267	1	7696	7696		27.882	2.3082	1	135040	+		17410	12967	10807	10859	17680	17680					0.09510602511409161
IEKQPPQVL	9	Unmodified	_IEKQPPQVL_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.3109741210938	2	526.310949	1050.60735	0.44898	0.0002363	0.42971	0.00022616	0.87869	0.00046247	526.3110664229987	29.191	0.63522	29.191	28.99	29.625	0					63	25	3	0	0	0	0.095583	2	9454	9454;9601		80.455	7.69	1	408820			17411	3480	10808	10860	17681;17682	17681					0.08406602511445271
IEKQPPQVL	9	Unmodified	_IEKQPPQVL_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.3111572265625	2	526.310949	1050.60735	1.2042	0.00063381	-0.45554	-0.00023976	0.7487	0.00039405	526.3107038954282	29.183	0.53345	29.183	29.054	29.587	0					35	14	3	0	0	0	0.11898	1	9788	9788		75.043	12.936	1	318840			17412	3480	10808	10860	17683	17683					0.08406602511445271
IEKRFHQF	8	Unmodified	_IEKRFHQF_					0	0	0			REV__ENST00000263791.9_1_15:40300307-40301836:+|nuORF	REV__ENST00000263791.9_1_15:40300307-40301836:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.800048828125	2	552.801083	1103.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.005	1	22.005	21.505	22.505	0								0	0	0	1.7419	1	7081	7081		55.504	2.1528	1		+		17413	18050	10809	10861	17684	17684					0.03996271291339326
IEKSVSEAL	9	Unmodified	_IEKSVSEAL_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2713317871094	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.111	1	28.111	27.611	28.611	0								0	0	0	0.03526	1	9029	9029		93.143	18.888	1				17414	8085	10810	10862	17685	17685					0.0401433048649551
IEKSVSEAL	9	Unmodified	_IEKSVSEAL_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.27142333984375	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.392	1	28.392	27.892	28.892	0								0	0	0	0.11963	1	10397	10397		66.962	4.8545	1				17415	8085	10810	10862	17686	17686					0.0401433048649551
IEKTELKV	8	Unmodified	_IEKTELKV_					0	0	0			REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2922058105469	2	480.292225	958.569897	-2.9251	-0.0014049	2.4999	0.0012007	-0.42521	-0.00020423	480.29336309732923	25.108	0.14163	25.108	25.029	25.171	0					8	3	3	0	0	0	0.49216	1	7927	7927		60.972	2.19	1	147460	+		17416	21847	10811	10863	17687	17687					0.08895511245816579
IEKVEHSDL	9	Unmodified	_IEKVEHSDL_					0	0	0		B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2802734375	2	535.279846	1068.54514	0.17703	9.4761E-05	0.77113	0.00041277	0.94817	0.00050753	535.2803325516877	21.906	0.22175	21.906	21.809	22.031	0					14	5	4	0	0	0	0.021015	1	7043	7043		120.31	40.367	1	1919200			17417	267	10812	10864	17688	17688					0.013608313724262189
IEKVEHSDL	9	Unmodified	_IEKVEHSDL_					0	0	0		B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2808227539062	2	535.279846	1068.54514	-0.6087	-0.00032583	0.98357	0.00052649	0.37487	0.00020066	535.2803413988617	21.603	0.13218	21.603	21.546	21.678	0					8	4	2	0	0	0	0.090954	1	6222	6222		81.525	15.096	1	378930			17418	267	10812	10864	17689	17689					0.013608313724262189
IEKVEHSDL	9	Unmodified	_IEKVEHSDL_					0	0	0		B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2802734375	2	535.279846	1068.54514	1.8058	0.00096662	-1.671	-0.00089446	0.13481	7.216E-05	535.2790105370907	21.816	0.11681	21.816	21.708	21.825	0					8	2	4	0	0	0	0.0055674	1	7277	7277		155.58	33.409	1	1513900			17419	267	10812	10864	17690	17690					0.013608313724262189
IEKVEHSDL	9	Unmodified	_IEKVEHSDL_					0	0	0		B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	B2M|p.Y98Lfs*5|1|0.08|ENSG00000166710|chr15:44715648-44715648|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.279541015625	2	535.279846	1068.54514	-1.3574	-0.00072656	1.4749	0.00078947	0.11752	6.2905E-05	535.2805489770969	21.666	0.16285	21.666	21.598	21.761	0					6	4	2	0	0	0	0.011389	1	6329	6329		138.06	34.006	1	344000			17420	267	10812	10864	17691	17691					0.013608313724262189
IELEEVDGTW	10	Unmodified	_IELEEVDGTW_					0	0	0			REV__CPSF3|p.L533W|1|0.11|ENSG00000119203|chr2:9455752-9455752|T/G|missense_variant	REV__CPSF3|p.L533W|1|0.11|ENSG00000119203|chr2:9455752-9455752|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.7800903320312	2	595.782418	1189.55028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.912	1	24.912	24.412	25.412	0								0	0	0	0.40862	1	8777	8777		27.882	0.83493	1		+		17421	12631	10813	10865	17692	17692					-0.036909095555984095
IELKSEKK	8	Unmodified	_IELKSEKK_					0	0	0			REV__RFC1|p.R505I|1|0.23|ENSG00000035928|chr4:39309007-39309007|C/A|missense_variant	REV__RFC1|p.R505I|1|0.23|ENSG00000035928|chr4:39309007-39309007|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7972717285156	2	487.797675	973.580796	-1.2466	-0.00060811	0.65522	0.00031961	-0.59143	-0.0002885	487.7978990125078	18.472	0.090324	18.472	18.413	18.503	0					7	3	3	0	0	0	0.46905	1	4835	4835		63.306	5.0763	1	126390	+		17422	21457	10814	10866	17693	17693					0.09294913620090028
IELLFPKLL	9	Unmodified	_IELLFPKLL_					0	0	0		ENST00000392455.7_2_3:191112649-191112850:+|nuORF	ENST00000392455.7_2_3:191112649-191112850:+|nuORF	ENST00000392455.7_2_3:191112649-191112850:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.5697326660156	3	362.570483	1084.68962	-2.0515	-0.0007438	-1.6906	-0.00061295	-3.742	-0.0013567	362.5699033325714	27.499	0.34042	27.499	27.403	27.743	0					14	8	2	0	0	0	0.56424	1	8991	8991		25.574	2.0514	1	75681			17423	9146	10815	10867	17694	17694					0.1506612459036205
IELLNETSF	9	Unmodified	_IELLNETSF_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7725219726562	2	533.276772	1064.53899	2.3234	0.001239	-1.0383	-0.00055367	1.2851	0.00068532	533.2760196481685	33.308	0.4879	33.308	33.182	33.67	0					24	12	3	0	0	0	0.41113	1	12427	12427		40.778	1.7567	1	275880			17424	4991	10816	10868	17695	17695					0.009303131409069465
IELNPLMLP	9	Unmodified	_IELNPLMLP_					0	0	0			REV__FAM186A|p.K681Nfs*7|1|0.11|ENSG00000185958|chr12:50354789-50354789|T/-|frameshift_variant	REV__FAM186A|p.K681Nfs*7|1|0.11|ENSG00000185958|chr12:50354789-50354789|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	347.1989440917969	3	347.200061	1038.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.831	1	48.831	48.331	49.331	0								0	0	0	0.3693	1	14808	14808		19.997	6.4888	1		+		17425	17058	10817	10869	17696	17696					0.0606074189076935
IELNQQNKL	9	Unmodified	_IELNQQNKL_					0	0	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.3095092773438	2	550.308938	1098.60332	1.2809	0.00070489	-0.57558	-0.00031675	0.70532	0.00038814	550.3086995664721	29.51	0.20754	29.51	29.413	29.62	0					12	6	3	0	0	0	0.015496	1	9318	9318		129.42	30.792	1	196260			17426	3955	10818	10870	17697	17697					0.05796513017708094
IELNQQNKL	9	Unmodified	_IELNQQNKL_					0	0	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3092651367188	2	550.308938	1098.60332	0.54533	0.0003001	0.33152	0.00018244	0.87685	0.00048254	550.3091221256193	29.77	0.44485	29.77	29.682	30.127	0					14	11	2	0	0	0	0.0097668	1	10671	10671		141.52	3.2782	1	1356300			17427	3955	10818	10870	17698	17698					0.05796513017708094
IELNQQNKL	9	Unmodified	_IELNQQNKL_					0	0	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.308837890625	2	550.308938	1098.60332	0.19612	0.00010793	0.49364	0.00027166	0.68976	0.00037958	550.3091645978069	29.792	0.16809	29.792	29.683	29.851	0					5	3	2	0	0	0	0.026538	1	11059	11059		112.41	16.596	1	130990			17428	3955	10818	10870	17699	17699					0.05796513017708094
IELNQQNKL	9	Unmodified	_IELNQQNKL_					0	0	0		OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3092651367188	2	550.308938	1098.60332	-1.4223	-0.0007827	2.4973	0.0013743	1.075	0.0005916	550.310063637306	29.536	0.12629	29.536	29.489	29.616	0					5	3	2	0	0	0	0.0071053	1	9954	9954		148.99	30.244	1	138800			17429	3955	10818	10870	17700	17700					0.05796513017708094
IELRITDS	8	Unmodified	_IELRITDS_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7637939453125	2	473.763832	945.513111	-0.48551	-0.00023002	-0.29373	-0.00013916	-0.77924	-0.00036918	473.763735688518	30.434	0.18141	30.434	30.335	30.517	0					7	4	2	0	0	0	0.46905	1	10357	10357		63.306	0	1	170180	+		17430	16154	10819	10871	17701	17701					0.03817463689279066
IELRVTSL	8	Unmodified	_IELRVTSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7840270996094	2	465.784567	929.554582	0.67128	0.00031267	-2.8403	-0.001323	-2.169	-0.0010103	465.7840613964631	41.423	0.41582	41.423	41.197	41.613	0					26	18	2	0	0	0	0.66095	1	16271	16271		39.253	0	1	115390			17431	5131	10820	10872	17702	17702					0.08698644448622872
IELRVTSL	8	Unmodified	_IELRVTSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.784423828125	2	465.784567	929.554582	0.67305	0.0003135	-2.1085	-0.00098212	-1.4355	-0.00066863	465.78403062049233	41.388	0.46144	41.388	41.227	41.689	0					17	11	2	0	0	0	0.30066	1	16440	16440		82.75	5.9763	1	122520			17432	5131	10820	10872	17703	17703					0.08698644448622872
IELSLKYD	8	Unmodified	_IELSLKYD_					0	0	0		tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.5152282714844	3	327.514814	979.522613	0.55157	0.00018065	0.52796	0.00017291	1.0795	0.00035356	327.51504865894816	33.292	0.27587	33.292	33.203	33.479	0					11	6	2	0	0	0	0.76283	1	12738	12738		35.618	14.671	1	483170			17433	23030	10821	10873	17704	17704					0.032032319747941074
IELTRAALY	9	Unmodified	_IELTRAALY_					0	0	0			REV__ENST00000480646.1_1_1:1324830-1326370:-|nuORF	REV__ENST00000480646.1_1_1:1324830-1326370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.5378112792969	3	350.537842	1048.5917	-0.045174	-1.5835E-05	-0.036989	-1.2966E-05	-0.082163	-2.8801E-05	350.5377485263676	26.159	0.21402	26.159	26.051	26.265	0					7	4	2	0	0	0	0.5654	1	9219	9219		19.104	0	1	348720	+		17434	17613	10822	10874	17705	17705					0.06934315994362805
IEMAILTAL	9	Unmodified	_IEMAILTAL_					0	0	0		TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;ENST00000558070.1_1_15:31352716-31354937:-|nuORF;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant	TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7837829589844	2	487.783179	973.551804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.123	1	19.123	18.623	19.623	0								0	0	0	0.31838	1	4888	4888		11.511	0	1				17435	23069	10823	10875	17706	17706					0.06397052999443531
IEMKVVSL	8	Unmodified	_IEMKVVSL_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;ENST00000591502.1_1_19:33481365-33482797:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.76971435546875	2	459.770071	917.52559	0.8133	0.00037393	-2.1035	-0.00096714	-1.2902	-0.00059321	459.7695431757877	40.981	0.19143	40.981	40.914	41.106	0					12	8	2	0	0	0	0.25873	1	15585	15585		96.19	16.251	1	98053			17436	3751	10824	10876	17707	17707					0.06352783827992425
IEMKVVSL	8	Unmodified	_IEMKVVSL_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;ENST00000591502.1_1_19:33481365-33482797:-|nuORF	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7697448730469	2	459.770071	917.52559	-0.44828	-0.00020611	-0.41583	-0.00019119	-0.86412	-0.00039729	459.76980004089273	40.9	0.19726	40.9	40.762	40.959	0					4	2	2	0	0	0	0.50061	1	16242	16242		60.118	1.3363	1	145150			17437	3751	10824	10876	17708	17708					0.06352783827992425
IEMLTVQN	8	Unmodified	_IEMLTVQN_					0	0	0		tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.25067138671875	2	474.24696	946.479368	0.70044	0.00033218	3.5296	0.0016739	4.23	0.0020061	474.24984024824295	29.062	0.41435	29.062	28.843	29.258	0					24	8	4	0	0	0	0.32815	1	10587	10587		79.451	2.6769	1	1804000			17438	22982	10825	10877	17709	17709					0.003987189258850776
IEMNINKM	8	Unmodified	_IEMNINKM_					0	0	0		GPRC6A|p.V453Lfs*6|1|0.08|ENSG00000173612|chr6:116800775-116800776|-/TAAG|frameshift_variant;GPRC6A|p.L564Vfs*14|1|0.08|ENSG00000173612|chr6:116793233-116793234|-/TATTTAC|frameshift_variant;nc|ENSG00000173612|Q5T6X5-3|GPRC6A;ENSG00000173612|ENST00000310357|GPRC6A	GPRC6A|p.V453Lfs*6|1|0.08|ENSG00000173612|chr6:116800775-116800776|-/TAAG|frameshift_variant	GPRC6A|p.V453Lfs*6|1|0.08|ENSG00000173612|chr6:116800775-116800776|-/TAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7474060058594	2	496.748813	991.483073	-0.69378	-0.00034464	-3.0717	-0.0015259	-3.7655	-0.0018705	496.747630050446	39.839	0.23592	39.839	39.752	39.987	0					10	5	3	0	0	0	0.43813	1	15785	15785		66.429	6.1353	1	106950			17439	6439	10826	10878	17710	17710					-0.013009345718955956
IEMRFIKQ	8	Unmodified	_IEMRFIKQ_					0	0	0			REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8009033203125	2	532.799694	1063.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.267	1	12.267	11.767	12.767	0								0	0	0	1.7419	1	2546	2546		44.117	1.7207	1		+		17440	13375	10827	10879	17711	17711					0.05558679842147285
IENGHIFTV	9	Unmodified	_IENGHIFTV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.271728515625	2	515.271824	1028.5291	-0.11386	-5.8669E-05	1.263	0.00065081	1.1492	0.00059214	515.2723624730778	37.705	0.23362	37.705	37.631	37.865	0					25	13	3	0	0	0	0.22823	1	12734	12734		60.118	5.3419	1	199610			17441	1172	10828	10880	17712	17712					0.01597169926208153
IENGHIFTV	9	Unmodified	_IENGHIFTV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2716674804688	2	515.271824	1028.5291	1.4069	0.00072496	-0.80629	-0.00041546	0.60065	0.0003095	515.2713266771833	37.937	0.54959	37.937	37.651	38.201	0					29	18	3	0	0	0	0.067603	1	14853	14853		93.143	31.036	1	713810			17442	1172	10828	10880	17713	17713					0.01597169926208153
IENGHIFTV	9	Unmodified	_IENGHIFTV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2714233398438	2	515.271824	1028.5291	-1.5642	-0.000806	1.951	0.0010053	0.38682	0.00019932	515.2729662573933	37.682	0.21747	37.682	37.623	37.841	0					15	10	2	0	0	0	0.12278	1	13483	13483		77.318	25.982	1	179760			17443	1172	10828	10880	17714	17714					0.01597169926208153
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7825012207031	2	479.782025	957.549496	0.028711	1.3775E-05	0.33512	0.00016079	0.36384	0.00017456	479.78210889606635	29.648	0.1952	29.648	29.55	29.745	0					13	7	3	0	0	0	0.032383	1	9365	9365		106.68	18.929	1	156650			17444	6618	10829	10881	17715	17715					0.06902340586009359
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7815246582031	2	479.782025	957.549496	0.48264	0.00023156	-0.98346	-0.00047185	-0.50083	-0.00024029	479.78143089305024	29.936	0.5718	29.936	29.527	30.098	0					28	14	4	0	0	0	0.015992	1	10733	10733		128.6	35.459	1	1196800			17445	6618	10829	10881	17716	17716					0.06902340586009359
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7817077636719	2	479.782025	957.549496	-1.4049	-0.00067406	0.9293	0.00044586	-0.47564	-0.0002282	479.78244836062726	29.657	0.22532	29.657	29.486	29.711	0					10	8	2	0	0	0	0.24334	1	9687	9687		56.434	1.6575	1	67785			17446	6618	10829	10881	17717	17717					0.06902340586009359
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7817077636719	2	479.782025	957.549496	-0.11278	-5.411E-05	-0.35867	-0.00017209	-0.47145	-0.0002262	479.78174583722614	29.924	0.20733	29.924	29.818	30.025	0					12	4	3	0	0	0	0.015992	1	11119	11119		128.6	35.407	1	570690			17447	6618	10829	10881	17718	17718					0.06902340586009359
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7822570800781	2	479.782025	957.549496	0.033006	1.5836E-05	0.44632	0.00021414	0.47933	0.00022997	479.7821014566415	29.674	0.12626	29.674	29.628	29.754	0					6	3	2	0	0	0	0.10506	1	10021	10021		78.264	4.0087	1	138080			17448	6618	10829	10881	17719	17719					0.06902340586009359
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7823181152344	2	479.782025	957.549496	-0.30953	-0.00014851	1.1596	0.00055636	0.85008	0.00040785	479.78243178922696	29.688	0.20269	29.688	29.575	29.778	0					8	5	2	0	0	0	0.095583	1	10015	10015		80.455	10.827	1	94065			17449	6618	10829	10881	17720	17720					0.06902340586009359
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7815856933594	2	479.782025	957.549496	-0.65244	-0.00031303	0.24003	0.00011516	-0.41241	-0.00019787	479.7821269622734	29.854	0.26591	29.854	29.748	30.014	0					13	5	3	0	0	0	0.010427	1	10974	10974		140.11	40.737	1	1110500			17450	6618	10829	10881	17721	17721					0.06902340586009359
IENGKVVSI	9	Unmodified	_IENGKVVSI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7818298339844	2	479.782025	957.549496	0.9223	0.0004425	-1.9073	-0.0009151	-0.98504	-0.0004726	479.7809844744613	29.838	0.41508	29.838	29.633	30.048	0					18	8	3	0	0	0	0.046074	1	10988	10988		96.665	19.347	1	913340			17451	6618	10829	10881	17722	17722					0.06902340586009359
IENILKIV	8	Unmodified	_IENILKIV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.3050842285156	2	471.305136	940.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.016	1	42.016	41.516	42.516	0								0	0	0	1.7419	1	16744	16744		79.939	3.0926	1		+		17452	17188	10830	10882	17723	17723					0.12304405488089287
IENKIAVVQDE	11	Unmodified	_IENKIAVVQDE_					0	0	0			REV__ENSG00000091128|ENST00000388781|LAMB4	REV__ENSG00000091128|ENST00000388781|LAMB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.894775390625	3	419.894354	1256.66123	1.0696	0.00044912	-0.18959	-7.9608E-05	0.88002	0.00036952	419.89434658211616	24.944	0.34555	24.944	24.864	25.209	0					17	8	3	0	0	0	0.20322	1	8474	8474		73.9	5.2747	1	539340	+		17453	13438	10831	10883	17724	17724					0.04316730152481796
IENLKFEK	8	Unmodified	_IENLKFEK_					0	0	0		tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7900695800781	2	510.78985	1019.56515	0.98335	0.00050229	-0.81442	-0.000416	0.16893	8.6289E-05	510.78954687493507	32.262	0.17123	32.262	32.181	32.353	0					10	4	3	0	0	0	0.55403	1	11843	11843		62.107	1.1355	1	172590			17454	22876	10832	10884	17725	17725					0.056146271030456774
IENNHLEY	8	Unmodified	_IENNHLEY_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4;LRRIQ4|p.V415I|1|0.26|ENSG00000188306|chr3:169830540-169830540|G/A|missense_variant	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.24365234375	2	516.243264	1030.47197	-1.5171	-0.00078319	1.4983	0.00077351	-0.018746	-9.6778E-06	516.2441849532305	24.946	0.24117	24.946	24.801	25.042	0					7	5	2	0	0	0	0.58597	1	7845	7845		51.335	3.4199	1	211240			17455	7245	10833	10885	17726	17726					-0.04204297350179331
IENNKAVVY	9	Unmodified	_IENNKAVVY_					0	0	0		tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2847900390625	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.951	1	32.951	32.451	33.451	0								0	0	0	0.10826	1	11032	11032		63.306	0	1				17456	22800	10834	10886	17727	17727					0.03297439097673305
IENNKAVVY	9	Unmodified	_IENNKAVVY_					0	0	0		tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2854614257812	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.94	1	32.94	32.44	33.44	0								0	0	0	0.12601	1	11510	11510		68.787	0	1				17457	22800	10834	10886	17728	17728					0.03297439097673305
IENNKAVVY	9	Unmodified	_IENNKAVVY_					0	0	0		tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2863159179688	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.172	1	33.172	32.672	33.672	0								0	0	0	0.088368	1	12583	12583		68.787	7.8149	1				17458	22800	10834	10886	17729	17729					0.03297439097673305
IENQRLQK	8	Unmodified	_IENQRLQK_					0	0	0		CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant;nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A;CCDC88A|p.I779Sfs*4|1|0.29|ENSG00000115355|chr2:55334486-55334486|T/-|frameshift_variant;CCDC88A|p.N1003Kfs*3|1|0.32|ENSG00000115355|chr2:55322681-55322682|-/T|frameshift_variant	CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant	CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7731323242188	2	514.795998	1027.57744	-0.49014	-0.00025232	0.83508	0.00042989	0.34493	0.00017757	514.796474873851	13.965	0.16682	13.965	13.857	14.024	0					6	3	2	0	0	0	0.76283	1	3511	3511		25.45	0	1	73462			17459	414	10835	10887	17730	17730					0.06475663566084222
IENTSHLL	8	Unmodified	_IENTSHLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.75030517578125	2	463.750724	925.486896	-0.47861	-0.00022196	-0.26827	-0.00012441	-0.74688	-0.00034637	463.7506249118999	30.688	0.16855	30.688	30.629	30.797	0					5	3	2	0	0	0	0.24806	1	11404	11404		104.75	10.74	1	111990			17460	1272	10836	10888	17731	17731					0.021171945178025453
IEPADAHVL	9	Unmodified	_IEPADAHVL_					0	0	0		nc|ENSG00000121579|Q9GZZ1-2|NAA50;ENSG00000121579|ENST00000240922|NAA50	nc|ENSG00000121579|Q9GZZ1-2|NAA50	nc|ENSG00000121579|Q9GZZ1-2|NAA50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.75823974609375	2	482.758549	963.502546	-0.60839	-0.00029371	0.38867	0.00018763	-0.21973	-0.00010607	482.7587147539164	32.92	0.54779	32.92	32.573	33.121	0					19	11	2	0	0	0	0.47038	1	12473	12473		35.618	4.0885	1	497940			17461	3228	10837	10889	17732	17732					0.01933481034848228
IEPASKASAV	10	Unmodified	_IEPASKASAV_					0	0	0			REV__ENSG00000143107|ENST00000370017|FNDC7	REV__ENSG00000143107|ENST00000370017|FNDC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7716979980469	2	486.771657	971.528761	-0.043199	-2.1028E-05	0.15504	7.5469E-05	0.11184	5.4441E-05	486.7717712589326	26.298	0.20525	26.298	26.193	26.398	0					10	6	2	0	0	0	0.26198	1	7983	7983		71.877	3.3928	1	185290	+		17462	15167	10838	10890	17733	17733					0.041857502063294305
IEPEAIIPKS	10	Unmodified	_IEPEAIIPKS_					0	0	0			REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant	REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.2132873535156	3	366.213135	1095.61758	0.47386	0.00017353	0.99468	0.00036427	1.4685	0.0005378	366.21331452251354	32.559	0.45649	32.559	32.369	32.826	0					26	11	3	0	0	0	0.70877	1	11961	11961		20.03	5.3368	1	382770	+		17463	13540	10839	10891	17734	17734					0.07359165445996041
IEPLYDILA	9	Unmodified	_IEPLYDILA_					0	0	0			REV__PPP4R4|p.H456Y|1|0.15|ENSG00000119698|chr14:94245608-94245608|C/T|missense_variant	REV__PPP4R4|p.H456Y|1|0.15|ENSG00000119698|chr14:94245608-94245608|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.5310363769531	3	349.530464	1045.56956	-0.073403	-2.5657E-05	0.61246	0.00021407	0.53906	0.00018842	349.5307069150864	19.281	0.096582	19.281	19.193	19.289	0					4	2	2	0	0	0	0.56424	1	5197	5197		25.574	1.0549	1	204150	+		17464	21408	10840	10892	17735	17735					0.04860091525961252
IEPNKIIV	8	Unmodified	_IEPNKIIV_					0	0	0			REV__VPS13A|p.E1553D|1|0.32|ENSG00000197969|chr9:77316202-77316202|A/T|missense_variant	REV__VPS13A|p.E1553D|1|0.32|ENSG00000197969|chr9:77316202-77316202|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.2891540527344	2	463.289485	924.564418	0.10515	4.8716E-05	-0.86947	-0.00040281	-0.76432	-0.0003541	463.2889585904499	34.516	0.12516	34.516	34.468	34.593	0					8	5	2	0	0	0	0.64144	1	11295	11295		42.396	1.8235	1	39005	+		17465	17372	10841	10893	17736	17736					0.09911832454008618
IEPRLFSNEGA	11	Unmodified	_IEPRLFSNEGA_					0	0	0			REV__ENSG00000167077|ENST00000401548|MEI1	REV__ENSG00000167077|ENST00000401548|MEI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.81689453125	2	616.817127	1231.6197	1.9561	0.0012066	-1.7537	-0.0010817	0.2024	0.00012484	616.8157846260583	33.52	0.23195	33.52	33.402	33.634	0					9	5	2	0	0	0	0.48922	1	12819	12819		45.022	1.3714	1	68364	+		17466	16163	10842	10894	17737	17737					0.013155941838249419
IEQAWVPSL	9	Unmodified	_IEQAWVPSL_					0	0	0			REV__ENST00000523752.5_1_8:22878943-22879036:-|nuORF	REV__ENST00000523752.5_1_8:22878943-22879036:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7805786132812	2	521.782025	1041.5495	-1.3175	-0.00068746	-1.5086	-0.00078717	-2.8262	-0.0014746	521.7811396608955	29.006	0.38734	29.006	28.91	29.297	0					22	10	3	0	0	0	0.090954	1	9710	9710		65.465	1.2581	1	318570	+		17467	19973	10843	10895	17738	17738					0.030383405859993218
IEQEEKILK	9	Unmodified	_IEQEEKILK_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.2200622558594	3	377.22029	1128.63904	-1.0929	-0.00041228	-0.16442	-6.2021E-05	-1.2573	-0.0004743	377.2202407478866	26.318	0.17816	26.318	26.238	26.416	0					13	5	3	0	0	0	0.36892	1	8256	8256		51.528	1.9917	1	354440			17468	6578	10844	10896	17739	17739					0.07986550474697651
IEQEHLYKL	9	Unmodified	_IEQEHLYKL_					0	0	0			REV__ENST00000515415.5_1_5:57754112-57754961:-|nuORF	REV__ENST00000515415.5_1_5:57754112-57754961:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.8174438476562	2	586.819138	1171.62372	-1.7412	-0.0010218	-1.1276	-0.00066169	-2.8688	-0.0016834	586.818540164616	19.315	0.13443	19.315	19.221	19.356	0					5	3	2	0	0	0	0.015992	1	5226	5226		101.25	0	1	263180	+		17469	15278	10845	10897	17740	17740					0.04477683677509958
IEQEIRIL	8	Unmodified	_IEQEIRIL_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.3030090332031	2	507.303124	1012.5917	1.2862	0.00065248	-1.3521	-0.00068593	-0.065932	-3.3448E-05	507.30249183758434	40.623	0.32624	40.623	40.392	40.718	0					13	7	3	0	0	0	0.59773	1	16151	16151		49.442	0	1	124930			17470	4106	10846	10898	17741	17741					0.08590315994376851
IEQEKRSEI	9	Unmodified	_IEQEKRSEI_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.303955078125	2	566.303852	1130.59315	1.7692	0.0010019	-1.21	-0.0006852	0.55921	0.00031668	566.303197743307	18.491	0.1407	18.491	18.431	18.571	0					8	3	3	0	0	0	0.037712	1	5422	5422		101.46	16.299	1	665570			17471	1161	10847	10899	17742	17742					0.03307905292490432
IEQEKRSEI	9	Unmodified	_IEQEKRSEI_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.3048706054688	2	566.303852	1130.59315	0.77772	0.00044042	1.5474	0.00087631	2.3251	0.0013167	566.3048487024176	18.307	0.078938	18.307	18.235	18.314	0					4	2	2	0	0	0	0.13907	1	4745	4745		70.399	10.468	1	82428			17472	1161	10847	10899	17743	17743					0.03307905292490432
IEQEKRSEI	9	Unmodified	_IEQEKRSEI_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3040771484375	2	566.303852	1130.59315	0.69466	0.00039339	-0.52625	-0.00029802	0.1684	9.5367E-05	566.3035910535593	18.43	0.11818	18.43	18.37	18.489	0					4	2	2	0	0	0	0.047855	1	5527	5527		96.034	5.4327	1	396180			17473	1161	10847	10899	17744	17744					0.03307905292490432
IEQEQKLAL	9	Unmodified	_IEQEQKLAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.3055419921875	2	536.305864	1070.59717	0.67056	0.00035962	0.1487	7.9747E-05	0.81925	0.00043937	536.3059430682534	32.274	0.19161	32.274	32.207	32.398	0					16	8	3	0	0	0	0.30841	1	10410	10410		49.536	3.0793	1	242680			17474	4222	10848	10900	17745	17745					0.06469994786198185
IEQEQKLAL	9	Unmodified	_IEQEQKLAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.30615234375	2	536.305864	1070.59717	0.19688	0.00010559	0.51832	0.00027798	0.71521	0.00038357	536.3061691085404	32.539	0.33265	32.539	32.454	32.786	0					21	8	4	0	0	0	0.017421	1	11941	11941		126.24	24.642	1	1577400			17475	4222	10848	10900	17746	17746					0.06469994786198185
IEQEQKLAL	9	Unmodified	_IEQEQKLAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.30615234375	2	536.305864	1070.59717	1.8415	0.00098761	-0.89734	-0.00048125	0.94417	0.00050636	536.3055246247795	32.528	0.61807	32.528	32.032	32.65	0					29	14	4	0	0	0	0.02429	1	12360	12360		114.89	2.4836	1	2885700			17476	4222	10848	10900	17747	17747					0.06469994786198185
IEQEQKLAL	9	Unmodified	_IEQEQKLAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.306396484375	2	536.305864	1070.59717	1.056	0.00056634	-0.2207	-0.00011836	0.83529	0.00044797	536.305858209905	32.319	0.22432	32.319	32.203	32.428	0					12	6	3	0	0	0	0.047855	1	11220	11220		96.034	20.99	1	305520			17477	4222	10848	10900	17748	17748					0.06469994786198185
IEQEQKLAL	9	Unmodified	_IEQEQKLAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.30615234375	2	536.305864	1070.59717	3.352	0.0017977	-2.8014	-0.0015024	0.55067	0.00029533	536.3041631993084	32.497	0.4193	32.497	32.287	32.706	0					23	8	5	0	0	0	0.0067848	1	12250	12250		150.36	10.391	1	4736500			17478	4222	10848	10900	17749	17749					0.06469994786198185
IEQGIKFSQE	10	Unmodified	_IEQGIKFSQE_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.8064575195312	2	589.806228	1177.5979	-0.13675	-8.0653E-05	0.97107	0.00057274	0.83432	0.00049209	589.8068089032861	28.215	0.16249	28.215	28.112	28.275	0					5	3	2	0	0	0	0.45669	1	10327	10327		37.812	7.4938	1	100740	+		17479	12884	10849	10901	17750	17750					0.016207894352419316
IEQGNTKAL	9	Unmodified	_IEQGNTKAL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2690124511719	2	487.269281	972.52401	-1.2446	-0.00060644	1.2922	0.00062965	0.047627	2.3207E-05	487.269712912344	20.932	0.14848	20.932	20.891	21.04	0					9	4	3	0	0	0	0.056004	1	5936	5936		93.143	16.369	1	255190			17480	6733	10850	10902	17751	17751					0.03664866063570571
IEQGNTKAL	9	Unmodified	_IEQGNTKAL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2690734863281	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.192	1	21.192	20.692	21.692	0								0	0	0	0.058887	1	6989	6989		83.647	1.4065	1				17481	6733	10850	10902	17752	17752					0.03664866063570571
IEQGNTKAL	9	Unmodified	_IEQGNTKAL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2690124511719	2	487.269281	972.52401	-2.9113	-0.0014186	2.503	0.0012196	-0.40834	-0.00019897	487.2703891954108	21.018	0.12846	21.018	20.936	21.064	0					8	3	3	0	0	0	0.13726	1	6022	6022		70.816	2.0294	1	357290			17482	6733	10850	10902	17753	17753					0.03664866063570571
IEQGNTKAL	9	Unmodified	_IEQGNTKAL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.26904296875	2	487.269281	972.52401	2.5532	0.0012441	-2.1862	-0.0010653	0.36699	0.00017882	487.26770400795357	21.165	0.41158	21.165	21.059	21.471	0					13	8	3	0	0	0	0.082776	1	6858	6858		83.647	14.86	1	1702600			17483	6733	10850	10902	17754	17754					0.03664866063570571
IEQGTPFTMFY	11	Unmodified	_IEQGTPFTMFY_					0	0	0			REV__tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	REV__tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2066345214844	3	445.209285	1332.60602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.453	1	28.453	27.953	28.953	0								0	0	0	0.41817	1	9176	9176		33.039	4.4627	1		+		17484	21848	10851	10903	17755	17755					-0.04697399639644573
IERAIGLKL	9	Unmodified	_IERAIGLKL_					0	0	0		ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.2217712402344	3	338.221965	1011.64407	0.53192	0.00017991	-0.83125	-0.00028115	-0.29933	-0.00010124	338.22171596112946	33.292	0.22924	33.292	33.203	33.433	0					10	5	3	0	0	0	0.38666	1	12740	12740		42.864	0	1	220910			17485	2474	10852	10904	17756	17756					0.1387089912798274
IERDHNRIR	9	Unmodified	_IERDHNRIR_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.8358154296875	2	604.833977	1207.6534	3.0157	0.001824	-0.069584	-4.2087E-05	2.9461	0.0017819	604.8339033372836	36.158	0.71672	36.158	35.996	36.713	0					20	14	2	0	0	0	0.24334	1	14013	14013		49.442	49.442	1	2906000	+		17486	15221	10853	10905	17757	17757					0.057880604662159385
IERPTYTNL	9	Unmodified	_IERPTYTNL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;TUBA4A|p.R229H|1|0.38|ENSG00000127824|chr2:219251013-219251013|C/T|missense_variant;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7962036132812	2	553.795663	1105.57677	1.6241	0.00089941	-2.1619	-0.0011972	-0.53778	-0.00029782	553.7949135406999	33.301	0.26342	33.301	33.138	33.402	0					16	6	3	0	0	0	0.082776	1	12751	12751		83.647	17.844	1	315420			17487	3319;10430;7961	10854	10906	17758	17758					0.028208241263882883
IERSKIVSI	9	Unmodified	_IERSKIVSI_					0	0	0		PPEF2|p.T315I|1|0.52|ENSG00000156194|chr4:75876663-75876663|G/A|missense_variant	PPEF2|p.T315I|1|0.52|ENSG00000156194|chr4:75876663-75876663|G/A|missense_variant	PPEF2|p.T315I|1|0.52|ENSG00000156194|chr4:75876663-75876663|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.82421875	2	522.824224	1043.63389	0.45427	0.0002375	0.52129	0.00027254	0.97556	0.00051005	522.8243337874154	33.965	0.30627	33.965	33.859	34.165	0					16	6	4	0	0	0	0.25761	1	12952	12952		54.722	0	1	1148200			17488	11954	10855	10907	17759	17759					0.11382291402765077
IERYKKEP	8	Unmodified	_IERYKKEP_					0	0	0		ARSH|p.R258K|1|0.49|ENSG00000205667|chrX:3018542-3018542|G/A|missense_variant	ARSH|p.R258K|1|0.49|ENSG00000205667|chrX:3018542-3018542|G/A|missense_variant	ARSH|p.R258K|1|0.49|ENSG00000205667|chrX:3018542-3018542|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.8013916015625	2	531.800749	1061.58694	0.36519	0.00019421	0.048557	2.5823E-05	0.41375	0.00022003	531.800994895699	40.149	0.16404	40.149	40.029	40.193	0					14	9	2	0	0	0	0.70598	1	12987	12987		32.812	0	1	71392			17489	229	10856	10908	17760	17760					0.058614318515992636
IERYPEETL	9	Unmodified	_IERYPEETL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2937622070312	2	575.292953	1148.57135	-0.099155	-5.7043E-05	0.57729	0.00033211	0.47813	0.00027507	575.2931731910271	33.196	0.26071	33.196	33.079	33.339	0					20	7	3	0	0	0	0.22823	1	12227	12227		58.246	8.7102	1	720440			17490	8001	10857	10909	17761	17761					0.003011005439020664
IERYPEETL	9	Unmodified	_IERYPEETL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.2933959960938	2	575.292953	1148.57135	-0.24213	-0.00013929	0.55936	0.00032179	0.31723	0.0001825	575.2932018618586	33.177	0.17993	33.177	33.079	33.259	0					8	4	3	0	0	0	0.30841	1	12685	12685		49.536	6.6718	1	143710			17491	8001	10857	10909	17762	17762					0.003011005439020664
IERYPEETL	9	Unmodified	_IERYPEETL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2940673828125	2	575.292953	1148.57135	3.3209	0.0019105	-2.1538	-0.001239	1.1671	0.00067143	575.2916152775089	33.176	0.39381	33.176	32.988	33.382	0					17	8	3	0	0	0	0.026848	1	12570	12570		112.11	27.192	1	1256800			17492	8001	10857	10909	17763	17763					0.003011005439020664
IESADLTSL	9	Unmodified	_IESADLTSL_					0	0	0		ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29	ENSG00000137473|ENST00000325106|TTC29	ENSG00000137473|ENST00000325106|TTC29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7481994628906	2	474.747847	947.481142	-0.60307	-0.0002863	-1.4399	-0.00068359	-2.043	-0.00096989	474.7485095900716	29.074	0.41418	29.074	28.86	29.274	0					22	8	4	0	0	0	0.071197	1	10617	10617		87.754	0	1	708440			17493	4167	10858	10910	17764	17764					0.005300512154803982
IESIVHAF	8	Unmodified	_IESIVHAF_					0	0	0		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.25079345703125	2	458.25036	914.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.44	1	40.44	39.94	40.94	0								0	0	0	1.7419	1	15936	15936		100.27	13.338	1				17494	5514	10859	10911	17765	17765					0.025503998687554486
IESIVHAF	8	Unmodified	_IESIVHAF_					0	0	0		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2500305175781	2	458.25036	914.486168	-0.43945	-0.00020138	-0.45557	-0.00020876	-0.89502	-0.00041014	458.25004222003827	40.4	0.2016	40.4	40.268	40.469	0					7	4	2	0	0	0	0.57802	1	16033	16033		52.299	7.7681	1	90761			17495	5514	10859	10911	17766	17766					0.025503998687554486
IESKEFMSSLQ	11	Unmodified	_IESKEFMSSLQ_					0	0	0		DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;DSCAML1|p.M1051Wfs*8|3|0.26|ENSG00000177103|chr11:117469970-117469970|C/-|frameshift_variant;DSCAML1|p.P778Hfs*36|1|0.26|ENSG00000177103|chr11:117504953-117504953|G/-|frameshift_variant	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant;DSCAML1|p.P778Hfs*36|1|0.26|ENSG00000177103|chr11:117504953-117504953|G/-|frameshift_variant	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	649.8179321289062	2	649.818478	1297.6224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.105	1	40.105	39.605	40.605	0								0	0	0	0.38672	1	14261	14261		40.058	0.80534	1				17496	848;849	10860	10912	17767	17767					-0.014503184735303876
IESKHEVTI	9	Unmodified	_IESKHEVTI_					0	0	0		ENST00000496698.5_1_7:129519475-129591134:-|nuORF;nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	ENST00000496698.5_1_7:129519475-129591134:-|nuORF	ENST00000496698.5_1_7:129519475-129591134:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2905883789062	2	528.290214	1054.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.393	1	22.393	21.893	22.893	0								0	0	0	0.16453	1	6662	6662		56.434	12.317	1				17497	7150	10861	10913	17768	17768					0.04077421752117516
IESKKELL	8	Unmodified	_IESKKELL_					0	0	0			REV__ENST00000586103.5_1_17:40880894-40880930:-|nuORF	REV__ENST00000586103.5_1_17:40880894-40880930:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2919616699219	2	480.292225	958.569897	-0.17997	-8.6437E-05	-0.44378	-0.00021315	-0.62375	-0.00029958	480.2920483774983	25.281	0.28285	25.281	25.132	25.415	0					14	6	4	0	0	0	0.24806	1	8629	8629		104.75	3.1458	1	1019300	+		17498	20480	10862	10914	17769	17769					0.08895511245816579
IESNHPIVL	9	Unmodified	_IESNHPIVL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000493122.1_1_13:98671845-98673393:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2864685058594	2	511.287474	1020.5604	-0.00243	-1.2424E-06	-0.17835	-9.1187E-05	-0.18078	-9.2429E-05	511.2874221811281	33.956	0.38583	33.956	33.833	34.219	0					24	10	3	0	0	0	0.13267	1	12578	12578		71.877	18.526	1	1705400			17499	1364	10863	10915	17770	17770					0.05093742960275449
IESNHPIVL	9	Unmodified	_IESNHPIVL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000493122.1_1_13:98671845-98673393:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.287353515625	2	511.287474	1020.5604	-0.43571	-0.00022277	0.21302	0.00010891	-0.22269	-0.00011386	511.28758637079903	33.943	0.22683	33.943	33.817	34.044	0					9	5	2	0	0	0	0.098791	1	13024	13024		79.713	8.4169	1	380470			17500	1364	10863	10915	17771	17771					0.05093742960275449
IESPADGPK	9	Unmodified	_IESPADGPK_					0	0	0			REV__nc|ENSG00000129566|Q99973-2|TEP1	REV__nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2348327636719	2	457.234907	912.455261	0.76575	0.00035013	-0.87387	-0.00039956	-0.10812	-4.9434E-05	457.2345337978178	23.184	0.18348	23.184	23.093	23.277	0					10	4	3	0	0	0	0.2873	1	7655	7655		51.335	7.2187	1	405800	+		17501	14551	10864	10916	17772	17772					-0.004467982361347822
IESSEETDQG	10	Unmodified	_IESSEETDQG_					0	0	0		PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant;PTPRS|p.P676Rfs*134|2|0.2|ENSG00000105426|chr19:5231438-5231438|G/-|frameshift_variant;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant	PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7288818359375	2	547.72784	1093.44113	1.8101	0.00099143	0.18204	9.9711E-05	1.9921	0.0010911	547.7279593506402	17.542	0.72082	17.542	17.435	18.156	0					37	14	4	0	0	0	0.16018	1	5238	5238		84.916	26.134	1	3902800			17502	2357	10865	10917	17773	17773					-0.10185540245743141
IESSPQYRL	9	Unmodified	_IESSPQYRL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000564284.1_1_16:28841101-28842119:+|nuORF;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ATXN2L|p.T504Hfs*33|1|0.12|ENSG00000168488|chr16:28832387-28832388|-/C|frameshift_variant;ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.787841796875	2	546.787838	1091.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.293	1	31.293	30.793	31.793	0								0	0	0	0.12732	1	10756	10756		67.494	14.405	1				17503	263	10866	10918	17774	17774					0.019005376093446102
IESSPQYRL	9	Unmodified	_IESSPQYRL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000564284.1_1_16:28841101-28842119:+|nuORF;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ATXN2L|p.T504Hfs*33|1|0.12|ENSG00000168488|chr16:28832387-28832388|-/C|frameshift_variant;ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7880249023438	2	546.787838	1091.56112	1.9072	0.0010428	-1.35	-0.00073817	0.5572	0.00030467	546.7869904929214	31.459	0.21735	31.459	31.353	31.571	0					11	4	3	0	0	0	0.19952	1	11778	11778		54.776	10.399	1	427130			17504	263	10866	10918	17775	17775					0.019005376093446102
IESSVGKSL	9	Unmodified	_IESSVGKSL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2580871582031	2	460.258382	918.502212	-0.43442	-0.00019994	0.11273	5.1886E-05	-0.32168	-0.00014806	460.2584121865822	25.645	0.16588	25.645	25.578	25.744	0					9	5	2	0	0	0	0.085655	1	7730	7730		82.75	22.632	1	120310			17505	4949	10867	10919	17776	17776					0.03970061315010298
IESSVGKSL	9	Unmodified	_IESSVGKSL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.258056640625	2	460.258382	918.502212	-0.68591	-0.00031569	-0.16637	-7.6571E-05	-0.85227	-0.00039227	460.25830861295213	25.954	0.35057	25.954	25.732	26.083	0					15	6	3	0	0	0	0.04067	1	8883	8883		98.582	16.341	1	568080			17506	4949	10867	10919	17777	17777					0.03970061315010298
IESSVGKSL	9	Unmodified	_IESSVGKSL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.258056640625	2	460.258382	918.502212	-0.89357	-0.00041127	0.77458	0.00035651	-0.11899	-5.4767E-05	460.2586325662969	25.66	0.18192	25.66	25.589	25.771	0					8	5	2	0	0	0	0.082776	1	8020	8020		83.647	21.54	1	136620			17507	4949	10867	10919	17778	17778					0.03970061315010298
IESSVGKSL	9	Unmodified	_IESSVGKSL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2579345703125	2	460.258382	918.502212	-2.5648	-0.0011805	2.1448	0.00098716	-0.42003	-0.00019332	460.2593236364545	25.729	0.10786	25.729	25.67	25.778	0					4	2	2	0	0	0	0.095583	1	8232	8232		80.455	8.5771	1	173470			17508	4949	10867	10919	17779	17779					0.03970061315010298
IESVNGKTV	9	Unmodified	_IESVNGKTV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7635498046875	2	473.763832	945.513111	-1.5804	-0.00074872	0.061785	2.9271E-05	-1.5186	-0.00071944	473.76445727148115	22.881	0.36911	22.881	22.818	23.187	0					14	12	2	0	0	0	0.04067	1	6794	6794		98.582	6.3914	1	229440			17509	1085	10868	10920	17780	17780					0.038174636892904346
IESVNGKTV	9	Unmodified	_IESVNGKTV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.76373291015625	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.942	1	22.942	22.442	23.442	0								0	0	0	0.10319	1	6920	6920		70.816	5.3508	1				17510	1085	10868	10920	17781	17781					0.038174636892904346
IESVNGKTV	9	Unmodified	_IESVNGKTV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.76348876953125	2	473.763832	945.513111	-2.55	-0.0012081	1.5693	0.00074347	-0.98067	-0.00046461	473.7646699585594	22.922	0.096916	22.922	22.855	22.952	0					4	2	2	0	0	0	0.27123	1	6912	6912		53.089	7.1167	1	122390			17511	1085	10868	10920	17782	17782					0.038174636892904346
IESVNGKTV	9	Unmodified	_IESVNGKTV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.763427734375	2	473.763832	945.513111	2.3852	0.00113	-4.1545	-0.0019682	-1.7692	-0.00083821	473.7622155144782	23.061	0.41313	23.061	22.956	23.369	0					13	8	2	0	0	0	0.11411	1	7778	7778		76.17	21.393	1	1162000			17512	1085	10868	10920	17783	17783					0.038174636892904346
IETAKITEY	9	Unmodified	_IETAKITEY_					0	0	0			REV__tr|U7SK63|U7SK63_FUSNUThiazolesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiGPE=3SV=1	REV__tr|U7SK63|U7SK63_FUSNUThiazolesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiGPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2852783203125	2	534.284597	1066.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.924	1	37.924	37.424	38.424	0								0	0	0	0.16453	1	14405	14405		49.442	0	1		+		17513	21749	10869	10921	17784	17784					0.02402599657943938
IETLTKTAL	9	Unmodified	_IETLTKTAL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2976379394531	2	495.297507	988.580462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.975	1	32.975	32.475	33.475	0								0	0	0	0.19847	1	10696	10696		51.193	20.875	1				17514	7501	10870	10922	17785	17785					0.08571493900228688
IETLTKTAL	9	Unmodified	_IETLTKTAL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2972717285156	2	495.297507	988.580462	-0.40316	-0.00019968	0.11027	5.4617E-05	-0.29288	-0.00014507	495.2975345526217	33.256	0.19869	33.256	33.141	33.339	0					11	5	3	0	0	0	0.28504	1	12268	12268		51.528	9.1316	1	639960			17515	7501	10870	10922	17786	17786					0.08571493900228688
IETLTKTAL	9	Unmodified	_IETLTKTAL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.29766845703125	2	495.297507	988.580462	0.70369	0.00034854	-0.47625	-0.00023588	0.22745	0.00011265	495.2972528448115	33.229	0.17096	33.229	33.138	33.309	0					11	4	3	0	0	0	0.085655	1	12710	12710		82.75	27.974	1	547200			17516	7501	10870	10922	17787	17787					0.08571493900228688
IETLTKTAL	9	Unmodified	_IETLTKTAL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2971496582031	2	495.297507	988.580462	-2.4358	-0.0012064	2.1903	0.0010849	-0.24544	-0.00012157	495.29840359618464	32.998	0.17437	32.998	32.916	33.09	0					10	5	3	0	0	0	0.15163	1	11542	11542		67.494	28.241	1	115250			17517	7501	10870	10922	17788	17788					0.08571493900228688
IETLVLAK	8	Unmodified	_IETLVLAK_					0	0	0			REV__ENST00000588167.1_1_18:12009921-12028151:+|nuORF	REV__ENST00000588167.1_1_18:12009921-12028151:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7833251953125	2	443.784036	885.553519	0.77015	0.00034178	-1.4946	-0.00066328	-0.72446	-0.0003215	443.78338129381365	42.956	0.14838	42.956	42.812	42.96	0					9	5	2	0	0	0	0.58597	1	17157	17157		51.335	0	1	59428	+		17518	15113	10871	10923	17789	17789					0.10616430079699057
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2617797851562	2	513.261122	1024.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.866	1	38.866	38.366	39.366	0								0	0	0	0.11736	1	12655	12655		67.494	11.989	1				17519	996	10872	10924	17790	17790					-0.0035825989318709617
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.260986328125	2	513.261122	1024.50769	1.1009	0.00056505	-0.53043	-0.00027225	0.57047	0.0002928	513.2609336025968	39.192	0.33078	39.192	39.111	39.442	0					21	11	3	0	0	0	0.048471	1	14904	14904		95.815	8.0609	1	474730			17520	996	10872	10924	17791	17791					-0.0035825989318709617
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2620239257812	2	513.261122	1024.50769	0.96408	0.00049482	0.92004	0.00047222	1.8841	0.00096705	513.2614794275846	38.935	0.081383	38.935	38.897	38.978	0					7	4	2	0	0	0	0.36892	1	13910	13910		44.377	10.205	1	32351			17521	996	10872	10924	17792	17792					-0.0035825989318709617
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.261962890625	2	513.261122	1024.50769	0.53243	0.00027327	0.32306	0.00016581	0.85549	0.00043909	513.261184078918	38.946	0.23345	38.946	38.867	39.101	0					22	12	3	0	0	0	0.0406	1	13903	13903		98.629	16.324	1	139440			17522	996	10872	10924	17793	17793					-0.0035825989318709617
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.262939453125	2	513.261122	1024.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.913	1	38.913	38.413	39.413	0								0	0	0	0.10826	1	13900	13900		69.628	12.907	1				17523	996	10872	10924	17794	17794					-0.0035825989318709617
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2621459960938	2	513.261122	1024.50769	0.087298	4.4807E-05	0.84738	0.00043492	0.93467	0.00047973	513.2614987659402	39.132	0.38024	39.132	38.937	39.317	0					15	8	3	0	0	0	0.048471	1	15430	15430		95.815	18.969	1	368600			17524	996	10872	10924	17795	17795					-0.0035825989318709617
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2614135742188	2	513.261122	1024.50769	1.4466	0.00074248	-0.59903	-0.00030746	0.84757	0.00043502	513.2608660814981	39.115	0.33242	39.115	39.015	39.348	0					18	7	3	0	0	0	0.04067	1	15442	15442		98.582	24.327	1	745090			17525	996	10872	10924	17796	17796					-0.0035825989318709617
IETTGTYQL	9	Unmodified	_IETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2614135742188	2	513.261122	1024.50769	3.1657	0.0016249	-2.1336	-0.0010951	1.0321	0.00052975	513.2599560212008	39.104	0.33383	39.104	38.998	39.332	0					16	7	3	0	0	0	0.04067	1	15435	15435		98.582	16.341	1	811430			17526	996	10872	10924	17797	17797					-0.0035825989318709617
IETTKVEML	9	Unmodified	_IETTKVEML_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000579900.5_1_17:73231554-73231771:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.29052734375	2	532.288825	1062.5631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.758	1	35.758	35.258	36.258	0								0	0	0	0.3119	1	11723	11723		32.812	1.2826	1				17527	3415	10873	10925	17798	17798					0.03431830302929484
IETTKVEML	9	Unmodified	_IETTKVEML_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000579900.5_1_17:73231554-73231771:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2898559570312	2	532.288825	1062.5631	2.3818	0.0012678	-1.4347	-0.00076368	0.9471	0.00050413	532.2878655053094	36.06	0.16402	36.06	35.98	36.144	0					7	4	2	0	0	0	0.3269	1	13567	13567		47.96	2.0076	1	128280			17528	3415	10873	10925	17799	17799					0.03431830302929484
IEVEDENDN	9	Unmodified	_IEVEDENDN_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;CELSR1|p.T1849Rfs*8|2|0.25|ENSG00000075275|chr22:46397831-46397831|C/-|frameshift_variant;CELSR1|p.R2275Qfs*18|1|0.18|ENSG00000075275|chr22:46384603-46384604|-/G|frameshift_variant;CELSR1|p.I2650Sfs*5|1|0.42|ENSG00000075275|chr22:46369187-46369187|T/-|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;CELSR1|p.G614Afs*54|3|0.27|ENSG00000075275|chr22:46535330-46535330|C/-|frameshift_variant	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7235107421875	2	538.722558	1075.43056	0.85402	0.00046008	1.1537	0.00062155	2.0078	0.0010816	538.7230647854732	18.132	0.22455	18.132	18.061	18.286	0					23	8	4	0	0	0	0.17854	1	4470	4470		64.207	5.4253	1	1248400			17529	467	10874	10926	17800	17800					-0.10413522900171301
IEVEHILN	8	Unmodified	_IEVEHILN_					0	0	0		RNF103|p.F203Lfs*4|2|0.25|ENSG00000239305|chr2:86605292-86605292|A/-|frameshift_variant	RNF103|p.F203Lfs*4|2|0.25|ENSG00000239305|chr2:86605292-86605292|A/-|frameshift_variant	RNF103|p.F203Lfs*4|2|0.25|ENSG00000239305|chr2:86605292-86605292|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.76580810546875	2	483.766374	965.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.676	1	35.676	35.176	36.176	0								0	0	0	1.7419	1	13793	13793		60.972	4.2509	1				17530	22348	10875	10927	17801	17801					0.03405767551919325
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7980346679688	2	536.797872	1071.58119	0.20376	0.00010938	-0.34267	-0.00018394	-0.13892	-7.457E-05	536.7976886694939	33.956	0.16766	33.956	33.869	34.037	0					7	4	2	0	0	0	0.037098	1	12613	12613		106.68	21.522	1	598500			17531	6411	10876	10928	17802	17802					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7984008789062	2	536.797872	1071.58119	-0.42349	-0.00022733	1.3023	0.00069908	0.87884	0.00047176	536.7985320616999	33.768	0.24725	33.768	33.698	33.945	0					14	9	3	0	0	0	0.061298	1	11343	11343		75.043	0	1	495100			17532	6411	10876	10928	17803	17803					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7984619140625	2	536.797872	1071.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.936	1	33.936	33.436	34.436	0								0	0	0	0.001677	1	13033	13033		96.034	31.826	1				17533	6411	10876	10928	17804	17804					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7987060546875	2	536.797872	1071.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.718	1	33.718	33.218	34.218	0								0	0	0	0.014733	1	11864	11864		88.177	20.683	1				17534	6411	10876	10928	17805	17805					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8085327148438	2	536.797872	1071.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.881	1	33.881	33.381	34.381	0								0	0	0	0.041296	1	12925	12925		74.165	12.058	1				17535	6411	10876	10928	17806	17806					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7987060546875	2	536.797872	1071.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.921	1	33.921	33.421	34.421	0								0	0	0	0.017282	1	12944	12944		85.862	0	1				17536	6411	10876	10928	17807	17807					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.79833984375	2	536.797872	1071.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.91	1	33.91	33.41	34.41	0								0	0	0	0.001677	1	12939	12939		106.68	24.443	1				17537	6411	10876	10928	17808	17808					0.04826288549293167
IEVENKNNL	9	Unmodified	_IEVENKNNL_					0	0	0		UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant;ENSG00000173960|ENST00000309033|UBXN2A	UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant	UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7855834960938	2	536.785296	1071.55604	1.9594	0.0010518	-2.0042	-0.0010758	-0.044778	-2.4036E-05	536.7844943680814	25.869	0.75213	25.869	25.498	26.25	0					31	13	5	0	0	0	0.047855	1	9091	9091		96.034	13.283	1	1524000			17538	6464	10877	10929	17809	17809					0.023122337467157195
IEVKDHQF	8	Unmodified	_IEVKDHQF_					0	0	0			REV__HSPA1B|p.G24D|1|0.31|ENSG00000204388|chr6:31828021-31828021|G/A|missense_variant	REV__HSPA1B|p.G24D|1|0.31|ENSG00000204388|chr6:31828021-31828021|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.26409912109375	2	508.263999	1014.51345	1.3155	0.00066863	-1.4554	-0.00073974	-0.1399	-7.1105E-05	508.2634201962532	34.237	0.35527	34.237	34.134	34.489	0					17	7	4	0	0	0	0.34592	1	13114	13114		66.429	7.6473	1	664970	+		17539	20753	10878	10930	17810	17810					0.006768834091417375
IEVNKSGTV	9	Unmodified	_IEVNKSGTV_					0	0	0		SERPINE1|p.E353K|1|0.29|ENSG00000106366|chr7:101135771-101135771|G/A|missense_variant	SERPINE1|p.E353K|1|0.29|ENSG00000106366|chr7:101135771-101135771|G/A|missense_variant	SERPINE1|p.E353K|1|0.29|ENSG00000106366|chr7:101135771-101135771|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.76361083984375	2	473.763832	945.513111	-0.12147	-5.7548E-05	-0.77278	-0.00036612	-0.89425	-0.00042366	473.7635536410936	30.656	0.41693	30.656	30.464	30.88	0					17	9	4	0	0	0	0.07136	1	11492	11492		87.696	13.441	1	687250			17540	22386	10879	10931	17811	17811					0.038174636892904346
IEVNKSGTV	9	Unmodified	_IEVNKSGTV_					0	0	0		SERPINE1|p.E353K|1|0.29|ENSG00000106366|chr7:101135771-101135771|G/A|missense_variant	SERPINE1|p.E353K|1|0.29|ENSG00000106366|chr7:101135771-101135771|G/A|missense_variant	SERPINE1|p.E353K|1|0.29|ENSG00000106366|chr7:101135771-101135771|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.76348876953125	2	473.763832	945.513111	-0.12715	-6.0237E-05	-0.47067	-0.00022299	-0.59782	-0.00028322	473.76354353925893	30.438	0.1413	30.438	30.352	30.494	0					5	3	2	0	0	0	0.19605	1	10362	10362		62.107	5.3864	1	86897			17541	22386	10879	10931	17812	17812					0.038174636892904346
IEVRRPHA	8	Unmodified	_IEVRRPHA_					0	0	0			REV__ENSG00000092470|ENST00000263795|WDR76	REV__ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.28125	2	489.2856	976.556647	-0.43113	-0.00021095	-4.3947	-0.0021503	-4.8259	-0.0023612	489.2827720157728	41.793	0.33149	41.793	41.653	41.984	0					36	16	3	0	0	0	0.76283	1	15879	15879		25.45	1.2474	1	190160	+		17542	13454	10880	10932	17813	17813					0.06743117977089241
IEVTKFDKK	9	Unmodified	_IEVTKFDKK_					0	0	0			REV__ENST00000530028.2_2_15:49171086-49171392:+|nuORF	REV__ENST00000530028.2_2_15:49171086-49171392:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.3245239257812	2	554.324057	1106.63356	1.3122	0.00072737	-0.63764	-0.00035346	0.67454	0.00037391	554.323515930355	23	0.57005	23	22.907	23.477	0					47	17	5	0	0	0	0.3269	1	6746	6746		32.812	0	1	5164600	+		17543	20039	10881	10933	17814	17814					0.08450871682885008
IEVTRESL	8	Unmodified	_IEVTRESL_					0	0	0			REV__PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant	REV__PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7635803222656	2	473.763832	945.513111	-1.5771	-0.00074717	0.92309	0.00043733	-0.65401	-0.00030984	473.7642188174021	30.419	0.13416	30.419	30.346	30.48	0					8	4	2	0	0	0	0.48092	1	9995	9995		62.107	1.9892	1	111900	+		17544	15022	10882	10934	17815	17815					0.03817463689279066
IEWILKEF	8	Unmodified	_IEWILKEF_					0	0	0			REV__ENST00000495527.5_2_1:203819629-203821524:+|nuORF	REV__ENST00000495527.5_2_1:203819629-203821524:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.3012084960938	2	539.302593	1076.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.814	1	40.814	40.314	41.314	0								0	0	0	1.7419	1	15556	15556		31.955	2.8053	1		+		17545	13074	10883	10935	17816	17816					0.0554010162547911
IEWTLEQL	8	Unmodified	_IEWTLEQL_					0	0	0		DRP2|p.R228W|1|0.14|ENSG00000102385|chrX:101241790-101241790|C/T|missense_variant	DRP2|p.R228W|1|0.14|ENSG00000102385|chrX:101241790-101241790|C/T|missense_variant	DRP2|p.R228W|1|0.14|ENSG00000102385|chrX:101241790-101241790|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2765502929688	2	516.274032	1030.53351	0.87558	0.00045204	4.3732	0.0022578	5.2488	0.0027098	516.2764704042404	35.199	0.22964	35.199	35.111	35.34	0					13	6	3	0	0	0	0.3049	1	13613	13613		82.241	5.4664	1	106110			17546	846	10884	10936	17817	17817					0.01946634349087617
IEYAKPTRL	9	Unmodified	_IEYAKPTRL_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.81640625	2	545.816399	1089.61824	1.864	0.0010174	-1.4298	-0.00078043	0.43413	0.00023695	545.81562418714	26.167	0.25574	26.167	26.042	26.298	0					14	6	3	0	0	0	0.21222	1	9005	9005		45.022	17.14	1	438840			17547	2308	10885	10937	17818	17818					0.07702004885709357
IEYAKPTRL	9	Unmodified	_IEYAKPTRL_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.81689453125	2	545.816399	1089.61824	0.88404	0.00048252	-0.27623	-0.00015077	0.6078	0.00033175	545.8163908705029	26.15	0.21433	26.15	26.034	26.249	0					10	4	3	0	0	0	0.13109	1	9333	9333		56.434	5.0983	1	223670			17548	2308	10885	10937	17819	17819					0.07702004885709357
IEYAKPTRL	9	Unmodified	_IEYAKPTRL_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.2132873535156	3	364.213358	1089.61824	0.48465	0.00017652	-0.70695	-0.00025748	-0.2223	-8.0965E-05	364.2130672479573	26.159	0.21175	26.159	26.051	26.263	0					8	4	2	0	0	0	0.46194	1	9343	9343		36.447	4.9169	1	198600			17549	2308	10885	10937	17820	17820					0.07702004885709357
IEYAKPTRL	9	Unmodified	_IEYAKPTRL_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.815673828125	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.001	1	26.001	25.501	26.501	0								0	0	0	0.32323	1	8308	8308		23.523	12.657	1				17550	2308	10885	10937	17821	17821					0.07702004885709357
IEYAKPTRL	9	Unmodified	_IEYAKPTRL_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8165283203125	2	545.816399	1089.61824	0.56167	0.00030657	-0.10541	-5.7534E-05	0.45626	0.00024904	545.8164556134259	26.11	0.26515	26.11	26	26.265	0					12	5	3	0	0	0	0.10821	1	9197	9197		61.691	17.314	1	458250			17551	2308	10885	10937	17822	17822					0.07702004885709357
IEYEKKQTL	9	Unmodified	_IEYEKKQTL_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.3197021484375	2	576.318971	1150.62339	-0.31447	-0.00018123	0.88617	0.00051072	0.5717	0.00032948	576.3195126341686	22.196	0.16541	22.196	22.136	22.302	0					7	3	3	0	0	0	0.026848	1	7489	7489		112.11	47.9	1	429730			17552	1355	10886	10938	17823	17823					0.05410263957674033
IEYHLLTY	8	Unmodified	_IEYHLLTY_					0	0	0			REV__tr|U7SE86|U7SE86_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	REV__tr|U7SE86|U7SE86_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2759399414062	2	526.276575	1050.5386	1.6275	0.00085652	-1.9062	-0.0010032	-0.2787	-0.00014667	526.2758841836554	37.936	0.20235	37.936	37.837	38.039	0					10	4	3	0	0	0	0.64096	1	14883	14883		42.474	3.6683	1	370800	+		17553	21664	10887	10939	17824	17824					0.015349382117165078
IFANQFFVAI	10	Unmodified	_IFANQFFVAI_					0	0	0			REV__ENST00000480937.5_1_1:25666968-25687193:+|nuORF	REV__ENST00000480937.5_1_1:25666968-25687193:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.319580078125	2	585.321317	1168.62808	-1.7283	-0.0010116	-0.72411	-0.00042384	-2.4524	-0.0014355	585.3209280323467	23.551	0.30011	23.551	23.373	23.673	0					12	7	2	0	0	0	0.59277	1	7219	7219		30.504	0	1	77040	+		17554	16947	10888	10940	17825	17825					0.05051192891096434
IFAWRYIQFLP	11	Unmodified	_IFAWRYIQFLP_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.27142333984375	3	485.271207	1452.79179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.855	1	45.855	45.355	46.355	0								0	0	0	0.42444	1	18371	18371		31.634	7.4025	1		+		17555	15143	10889	10941	17826	17826					0.08350790661961582
IFDGRVVAK	9	Unmodified	_IFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7976989746094	2	502.798009	1003.58147	1.6606	0.00083494	-1.709	-0.00085928	-0.048407	-2.4339E-05	502.7972570818829	30.792	0.13659	30.792	30.71	30.847	0					9	5	2	0	0	0	0.076532	1	9835	9835		69.628	20.186	1	126200			17556	4531	10890	10942	17827	17827					0.07981753059800667
IFDGRVVAK	9	Unmodified	_IFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.79754638671875	2	502.798009	1003.58147	0.6167	0.00031008	-1.2442	-0.0006256	-0.62753	-0.00031552	502.7974545447897	31.061	0.31426	31.061	30.928	31.242	0					11	7	2	0	0	0	0.022698	1	11241	11241		101.25	34.823	1	510280			17557	4531	10890	10942	17828	17828					0.07981753059800667
IFEKDSKFYL	10	Unmodified	_IFEKDSKFYL_					0	0	0		ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;ENST00000515737.5_1_4:2825262-2835558:+|nuORF	ENSG00000087266|ENST00000503393|SH3BP2	ENSG00000087266|ENST00000503393|SH3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	645.3440551757812	2	645.342446	1288.67034	2.9039	0.001874	-0.3471	-0.000224	2.5568	0.00165	645.3424470491533	12.217	0.072841	12.217	12.165	12.238	0					4	2	2	0	0	0	0.62149	1	2551	2551		31.634	5.5709	1	64525			17558	1764	10891	10943	17829	17829					0.03755123508813085
IFFLGAIMIF	10	Unmodified	_IFFLGAIMIF_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.22491455078125	3	391.224318	1170.65112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.814	1	45.814	45.314	46.314	0								0	0	0	0.41967	1	18355	18355		24.519	5.2565	1		+		17559	12914	10892	10944	17830	17830					0.07262495684199166
IFGKGAQG	8	Unmodified	_IFGKGAQG_					0	0	0		ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant;nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18	ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant	ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	389.21649169921875	2	389.216321	776.418088	-1.212	-0.00047172	1.305	0.00050793	0.093029	3.6208E-05	389.21677407236496	27.446	0.23669	27.446	27.383	27.62	0					14	8	2	0	0	0	0.70055	1	8737	8737		33.516	0	1	162450			17560	50	10893	10945	17831	17831					0.020935750087687666
IFGSVRALHK	10	Unmodified	_IFGSVRALHK_					0	0	0		nc|ENSG00000005187|Q53FZ2-2|ACSM3;ACSM3|p.T549Nfs*29|2|0.31|ENSG00000005187|chr16:20796453-20796454|-/A|frameshift_variant;ENSG00000005187|ENST00000289416|ACSM3	nc|ENSG00000005187|Q53FZ2-2|ACSM3	nc|ENSG00000005187|Q53FZ2-2|ACSM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.3377685546875	2	564.337833	1126.66111	-1.0734	-0.00060577	0.33918	0.00019141	-0.73423	-0.00041435	564.3379198676312	33.739	2.2056	33.739	33.628	35.834	0					232	72	5	0	0	0	0.68194	1	12461	12461		19.104	19.104	1	7060700			17561	39	10894	10946	17832	17832					0.10284819733783479
IFHWRKHRCRH	11	Unmodified	_IFHWRKHRCRH_					0	0	0			REV__ENSG00000181826|ENST00000454158|RELL1	REV__ENSG00000181826|ENST00000454158|RELL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	788.4193115234375	2	788.420562	1574.82657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.358	1	54.358	53.858	54.858	0								0	0	0	0.45674	1	19728	19728		9.7057	1.4706	1		+		17562	16858	10895	10947	17833	17833					0.062151480416559934
IFIIMIIAG	9	Unmodified	_IFIIMIIAG_					0	0	0			REV__tr|U7SGN0|U7SGN0_FUSNUDUF368domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02254PE=4SV=1	REV__tr|U7SGN0|U7SGN0_FUSNUDUF368domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02254PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.80810546875	2	495.806457	989.598361	2.8548	0.0014154	0.65355	0.00032404	3.5084	0.0017395	495.80679026904664	27.793	0.56623	27.793	27.628	28.194	0					25	11	4	0	0	0	0.31222	1	9996	9996		49.211	49.211	1	1683400	+		17563	21699	10896	10948	17834	17834					0.10314537621388808
IFIKDSNSL	9	Unmodified	_IFIKDSNSL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7877807617188	2	518.787307	1035.56006	0.056395	2.9257E-05	0.83128	0.00043126	0.88768	0.00046052	518.7874451753972	35.069	0.36207	35.069	34.943	35.305	0					20	9	3	0	0	0	0.02429	1	13107	13107		114.89	21.751	1	1641000			17564	1957	10897	10949	17835	17835					0.04370323240414109
IFIKDSNSL	9	Unmodified	_IFIKDSNSL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.78759765625	2	518.787307	1035.56006	-0.34881	-0.00018096	1.3935	0.00072293	1.0447	0.00054197	518.7877873754109	35.061	0.36964	35.061	34.912	35.281	0					24	10	3	0	0	0	0.02429	1	13548	13548		114.89	29.979	1	1829400			17565	1957	10897	10949	17836	17836					0.04370323240414109
IFKAELNEF	9	Unmodified	_IFKAELNEF_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7955932617188	2	555.795132	1109.57571	3.5527	0.0019746	-2.3381	-0.0012995	1.2146	0.00067509	555.7937801450481	42.857	0.26044	42.857	42.762	43.023	0					12	8	2	0	0	0	0.15558	1	17136	17136		66.962	15.769	1	129720			17566	4873	10898	10950	17837	17837					0.025306097574684827
IFKKEGLQ	8	Unmodified	_IFKKEGLQ_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7870788574219	2	481.78711	961.559667	0.080201	3.864E-05	-0.65697	-0.00031652	-0.57677	-0.00027788	481.7867525023433	25.673	0.13	25.673	25.578	25.708	0					9	4	3	0	0	0	0.2516	1	7743	7743		138.24	0	1	121750			17567	7027	10899	10951	17838	17838					0.07734948311224343
IFLAPGAGLL	10	Unmodified	_IFLAPGAGLL_					0	0	0		ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant;ALPK1|p.D1036Tfs*3|1|0.09|ENSG00000073331|chr4:112435215-112435215|G/-|frameshift_variant;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant	ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.30169677734375	2	486.299853	970.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.296	1	42.296	41.796	42.796	0								0	0	0	0.37129	1	16031	16031		54.765	22.81	1				17568	119	10900	10952	17839	17839					0.09868422833653767
IFLLNTFLA	9	Unmodified	_IFLLNTFLA_					0	0	0		tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.3113403320312	2	526.312961	1050.61137	-1.2226	-0.00064345	-1.4926	-0.00078556	-2.7151	-0.001429	526.31203661063	23.47	0.1852	23.47	23.373	23.558	0					9	4	3	0	0	0	0.15163	1	7174	7174		71.296	10.324	1	507970			17569	22863	10901	10953	17840	17840					0.08808692005140983
IFLMIGKTM	9	Unmodified	_IFLMIGKTM_					0	0	0			REV__ENST00000302243.11_1_16:70406767-70406821:+|nuORF	REV__ENST00000302243.11_1_16:70406767-70406821:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2947998046875	2	527.295399	1052.57624	0.58007	0.00030587	-1.0368	-0.00054668	-0.4567	-0.00024081	527.2948566716182	34.492	0.10953	34.492	34.435	34.544	0					7	4	2	0	0	0	0.26904	1	11277	11277		53.351	3.9099	1	67912	+		17570	18212	10902	10954	17841	17841					0.05205989881324058
IFLNVSTLV	9	Unmodified	_IFLNVSTLV_					0	0	0			REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.80035400390625	2	503.302593	1004.59063	1.1791	0.00059346	-3.8141	-0.0019197	-2.635	-0.0013262	503.8012563194563	41.415	0.46144	41.415	41.227	41.689	0					21	11	3	0	0	0	0.50461	1	16552	16552		31.955	9.995	1	117650	+		17571	12022	10903	10955	17842	17842					0.08852101625484465
IFLPAMSR	8	Unmodified	_IFLPAMSR_					0	0	0		L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|59|3|anti-sense	L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|59|3|anti-sense	L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|59|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.76361083984375	2	467.762581	933.510608	2.6389	0.0012344	-0.39388	-0.00018424	2.245	0.0010501	467.762423401746	22.858	0.4621	22.858	22.705	23.167	0					24	9	5	0	0	0	0.2423	1	7653	7653		114.59	9.8393	1	5625400			17572	11276	10904	10956	17843	17843					0.041193367506366485
IFLYANTTL	9	Unmodified	_IFLYANTTL_					0	0	0		L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|45|1|anti-sense	L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|45|1|anti-sense	L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|45|1|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.2904663085938	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.293	1	22.293	21.793	22.793	0								0	0	0	0.25587	1	6279	6279		42.864	1.4377	1				17573	11273	10905	10957	17844	17844					0.044795112457904906
IFNKYNKDK	9	Unmodified	_IFNKYNKDK_					0	0	0		ENST00000475237.5_1_7:81636985-81662181:-|nuORF;ENST00000492734.1_1_7:81641460-81667482:-|nuORF;CACNA2D1|p.Y629Tfs*3|1|0.3|ENSG00000153956|chr7:81984680-81984680|A/-|frameshift_variant;nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	ENST00000475237.5_1_7:81636985-81662181:-|nuORF	ENST00000475237.5_1_7:81636985-81662181:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	390.54876708984375	3	390.548629	1168.62406	0.87521	0.00034181	-0.9688	-0.00037836	-0.093591	-3.6552E-05	390.5482336359079	23.737	0.79203	23.737	23.309	24.101	0					46	18	4	0	0	0	0.43426	1	7892	7892		37.812	13.58	1	1013000			17574	352	10906	10958	17845	17845					0.046491033973552476
IFNLLPEVF	9	Unmodified	_IFNLLPEVF_					0	0	0			REV__ENST00000464468.1_1_7:931948-933548:+|nuORF	REV__ENST00000464468.1_1_7:931948-933548:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3091430664062	2	546.310418	1090.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.722	1	24.722	24.222	25.222	0								0	0	0	0.28666	1	7603	7603		23.042	0	1		+		17575	17675	10907	10959	17846	17846					0.06460388142522788
IFNPVAEEFI	10	Unmodified	_IFNPVAEEFI_					0	0	0			REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.8077392578125	2	589.808239	1177.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.109	1	12.109	11.609	12.609	0								0	0	0	0.4201	1	2501	2501		15.642	0.77694	1		+		17576	22135	10908	10960	17847	17847					0.020228789289376436
IFNPVSKNF	9	Unmodified	_IFNPVSKNF_					0	0	0		ENST00000589391.5_1_2:179401165-179403504:+|nuORF;ENST00000415561.1_1_2:179402212-179403504:+|nuORF;ENST00000588244.5_1_2:179402120-179403504:+|nuORF;ENST00000419746.5_1_2:179402219-179403504:+|nuORF;ENST00000589434.5_1_2:179388144-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2901611328125	2	533.290017	1064.56548	3.3959	0.001811	-2.3796	-0.001269	1.0164	0.00054201	533.2884457052904	39.167	0.41985	39.167	39.049	39.469	0					15	9	2	0	0	0	0.022698	1	15476	15476		112.41	46.608	1	930010			17577	9346	10909	10961	17848	17848					0.03578046822894976
IFNVVDAVN	9	Unmodified	_IFNVVDAVN_					0	0	0			REV__tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1	REV__tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7660827636719	2	495.766374	989.518196	-0.37829	-0.00018754	0.37358	0.00018521	-0.0047145	-2.3373E-06	495.76662197505453	27.745	0.72209	27.745	27.282	28.004	0					36	17	3	0	0	0	0.30951	1	9698	9698		49.442	1.5259	1	387780	+		17578	21705	10910	10962	17849	17849					0.023017675518985925
IFQNFLQQ	8	Unmodified	_IFQNFLQQ_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2772216796875	2	519.274367	1036.53418	3.3574	0.0017434	0.21767	0.00011303	3.5751	0.0018564	519.2747239661547	39.478	0.50426	39.478	39.23	39.734	0					35	11	5	0	0	0	0.30437	1	15587	15587		82.305	18.999	1	1754500			17579	3971	10911	10963	17850	17850					0.017374737888076197
IFRGMQIQ	8	Unmodified	_IFRGMQIQ_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7722473144531	2	496.770937	991.527321	2.8841	0.0014327	-0.21755	-0.00010807	2.6665	0.0013246	496.77074050643165	15.622	0.11933	15.622	15.562	15.681	0					4	2	2	0	0	0	0.41952	1	4173	4173		68.485	2.0554	1	306090	+		17580	14843	10912	10964	17851	17851					0.03121837636570035
IFRHDCQL	8	Carbamidomethyl (C)	_IFRHDC(Carbamidomethyl (C))QL_	IFRHDC(1)QL		IFRHDC(44)QL		0	1	0		GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant	GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant	GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.51715087890625	3	363.515043	1087.5233	1.1058	0.00040199	4.0395	0.0014684	5.1454	0.0018704	363.51634469935385	20.516	0.46564	20.516	20.328	20.793	0					21	9	4	0	0	0	0.63077	1	6548	6548		44.117	6.3053	1	2367500			17581	11176	10913	10965	17852	17852	446				-0.01696251857151765
IFRHDLSW	8	Unmodified	_IFRHDLSW_					0	0	0		SI|p.R248I|2|0.2|ENSG00000090402|chr3:165065325-165065325|C/A|missense_variant	SI|p.R248I|2|0.2|ENSG00000090402|chr3:165065325-165065325|C/A|missense_variant	SI|p.R248I|2|0.2|ENSG00000090402|chr3:165065325-165065325|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2805786132812	2	537.279983	1072.54541	-0.36234	-0.00019468	0.29216	0.00015697	-0.07018	-3.7706E-05	537.2799768747147	36.658	0.44814	36.658	36.522	36.97	0					55	24	4	0	0	0	0.49216	1	12388	12388		60.972	0.67798	1	1248900			17582	22394	10914	10966	17853	17853					0.012042958829397321
IFRHDLSW	8	Unmodified	_IFRHDLSW_					0	0	0		SI|p.R248I|2|0.2|ENSG00000090402|chr3:165065325-165065325|C/A|missense_variant	SI|p.R248I|2|0.2|ENSG00000090402|chr3:165065325-165065325|C/A|missense_variant	SI|p.R248I|2|0.2|ENSG00000090402|chr3:165065325-165065325|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2800903320312	2	537.279983	1072.54541	-1.423	-0.00076456	1.0447	0.00056127	-0.37837	-0.00020329	537.2804370220306	36.617	0.41051	36.617	36.511	36.921	0					40	19	3	0	0	0	0.5676	1	13091	13091		53.351	8.8204	1	677820			17583	22394	10914	10966	17854	17854					0.012042958829397321
IFSEHSCL	8	Carbamidomethyl (C)	_IFSEHSC(Carbamidomethyl (C))L_	IFSEHSC(1)L		IFSEHSC(77)L		0	1	0		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7285461425781	2	496.728935	991.443317	-0.32454	-0.00016121	-3.3253	-0.0016518	-3.6499	-0.001813	496.72884175867824	31.717	0.54171	31.717	31.518	32.059	0					28	13	4	0	0	0	0.34985	1	11550	11550		76.847	13.54	1	331330			17584	7513	10915	10967	17855	17855	320				-0.052747382509892304
IFSGGSSGGG	10	Unmodified	_IFSGGSSGGG_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000038253	REV__CON__ENSEMBL:ENSBTAP00000038253	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.6922607421875	2	413.1905	824.366446	-1.4517	-0.00059981	1.6805	0.00069435	0.22881	9.4542E-05	413.1910962111165	17.026	0.19136	17.026	16.896	17.087	0					12	7	3	0	0	0	0.64178	1	4169	4169		29.15	1.2673	1	350610	+	+	17585	12580	10916	10968	17856	17856					-0.052762134757927015
IFSNNQSTV	9	Unmodified	_IFSNNQSTV_					0	0	0			REV__AFF2|p.K542N|1|0.32|ENSG00000155966|chrX:148955671-148955671|G/T|missense_variant	REV__AFF2|p.K542N|1|0.32|ENSG00000155966|chrX:148955671-148955671|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.25115966796875	2	505.251089	1008.48762	0.80072	0.00040456	-0.49453	-0.00024986	0.30619	0.0001547	505.25087827543416	26.289	0.34289	26.289	26.204	26.547	0					12	8	2	0	0	0	0.17854	1	9059	9059		64.207	3.2353	1	1342800	+		17586	12098	10917	10969	17857	17857					-0.016280108331329757
IFSQANTPL	9	Unmodified	_IFSQANTPL_					0	0	0		nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;ENSG00000164398|ENST00000651883|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7660217285156	2	495.766374	989.518196	-0.38279	-0.00018977	0.64989	0.00032219	0.26711	0.00013242	495.766617786386	29.359	0.21189	29.359	29.273	29.485	0					9	5	2	0	0	0	0.12239	1	10484	10484		74.255	2.9593	1	214470			17587	11618	10918	10970	17858	17858					0.023017675519099612
IFSSTWDH	8	Unmodified	_IFSSTWDH_					0	0	0		ENST00000596842.5_1_19:18970283-18970517:+|nuORF	ENST00000596842.5_1_19:18970283-18970517:+|nuORF	ENST00000596842.5_1_19:18970283-18970517:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7289733886719	2	496.727249	991.439946	-0.059243	-2.9428E-05	0.88034	0.00043729	0.82109	0.00040786	496.7288784104972	31.434	0.21951	31.434	31.338	31.558	0					17	9	3	0	0	0	0.527	1	10095	10095		57.453	2.688	1	77383			17588	11007	10919	10971	17859	17859					-0.056116650333365214
IFTDLSSRF	9	Unmodified	_IFTDLSSRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2852783203125	2	543.284931	1084.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.43	1	44.43	43.93	44.93	0								0	0	0	0.23445	1	17298	17298		45.972	6.7194	1				17589	1615	10920	10972	17860	17860					0.016414390976706272
IFTLMFGLS	9	Unmodified	_IFTLMFGLS_					0	0	0			REV__ENST00000396051.2_1_4:71840973-71844946:+|nuORF	REV__ENST00000396051.2_1_4:71840973-71844946:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.780029296875	2	514.777896	1027.54124	0.036771	1.8929E-05	3.5475	0.0018262	3.5843	0.0018451	514.779782734105	27.381	0.15496	27.381	27.287	27.442	0					11	5	3	0	0	0	0.57706	1	8710	8710		24.203	1.1603	1	170980	+		17590	18891	10921	10973	17861	17861					0.02857070345021384
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.S919Pfs*33|1|0.11|ENSG00000023516|chr13:42301498-42301498|T/-|frameshift_variant;AKAP11|p.N964Mfs*17|1|0.38|ENSG00000023516|chr13:42301633-42301633|A/-|frameshift_variant;AKAP11|p.H747Tfs*7|1|0.07|ENSG00000023516|chr13:42300981-42300981|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.79638671875	2	534.795466	1067.57638	0.16767	8.9671E-05	0.77376	0.0004138	0.94144	0.00050348	534.7959063199738	39.22	0.33609	39.22	39.125	39.461	0					22	11	3	0	0	0	0.029571	1	14927	14927		109.44	24.278	1	420540			17591	107	10922	10974	17862	17862					0.045294491971844764
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.S919Pfs*33|1|0.11|ENSG00000023516|chr13:42301498-42301498|T/-|frameshift_variant;AKAP11|p.N964Mfs*17|1|0.38|ENSG00000023516|chr13:42301633-42301633|A/-|frameshift_variant;AKAP11|p.H747Tfs*7|1|0.07|ENSG00000023516|chr13:42300981-42300981|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7982788085938	2	534.795466	1067.57638	-0.5923	-0.00031676	2.6358	0.0014096	2.0435	0.0010928	534.7962867775038	39.016	0.11375	39.016	38.956	39.069	0					8	6	2	0	0	0	0.42902	1	13127	13127		39.253	19.893	1	45258			17592	107	10922	10974	17863	17863					0.045294491971844764
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.S919Pfs*33|1|0.11|ENSG00000023516|chr13:42301498-42301498|T/-|frameshift_variant;AKAP11|p.N964Mfs*17|1|0.38|ENSG00000023516|chr13:42301633-42301633|A/-|frameshift_variant;AKAP11|p.H747Tfs*7|1|0.07|ENSG00000023516|chr13:42300981-42300981|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7960205078125	2	534.795466	1067.57638	1.7893	0.0009569	-0.76912	-0.00041132	1.0202	0.00054558	534.795037811072	39.224	0.26333	39.224	39.107	39.37	0					21	9	3	0	0	0	0.037712	1	15402	15402		101.46	44.739	1	634550			17593	107	10922	10974	17864	17864					0.045294491971844764
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.S919Pfs*33|1|0.11|ENSG00000023516|chr13:42301498-42301498|T/-|frameshift_variant;AKAP11|p.N964Mfs*17|1|0.38|ENSG00000023516|chr13:42301633-42301633|A/-|frameshift_variant;AKAP11|p.H747Tfs*7|1|0.07|ENSG00000023516|chr13:42300981-42300981|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7972412109375	2	534.795466	1067.57638	-1.3427	-0.00071806	2.6617	0.0014235	1.3191	0.00070543	534.7967356724042	38.964	0.16998	38.964	38.902	39.072	0					14	9	2	0	0	0	0.36892	1	13913	13913		44.377	6.5657	1	70017			17594	107	10922	10974	17865	17865					0.045294491971844764
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.S919Pfs*33|1|0.11|ENSG00000023516|chr13:42301498-42301498|T/-|frameshift_variant;AKAP11|p.N964Mfs*17|1|0.38|ENSG00000023516|chr13:42301633-42301633|A/-|frameshift_variant;AKAP11|p.H747Tfs*7|1|0.07|ENSG00000023516|chr13:42300981-42300981|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7955322265625	2	534.795466	1067.57638	1.8547	0.00099189	-1.7276	-0.00092394	0.12705	6.7947E-05	534.7944693120049	39.15	0.23657	39.15	39.064	39.301	0					13	5	3	0	0	0	0.13267	1	15468	15468		71.877	6.0743	1	262850			17595	107	10922	10974	17866	17866					0.045294491971844764
IFVAFFSDTK	10	Unmodified	_IFVAFFSDTK_					0	0	0		PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant;ENSG00000144407|ENST00000272847|PTH2R	PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant	PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	587.8097534179688	2	587.810782	1173.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.699	1	27.699	27.199	28.199	0								0	0	0	0.4146	1	8570	8570		14.865	2.658	1				17596	4615	10923	10975	17867	17867					0.027151827915531612
IFVLSAIVPD	10	Unmodified	_IFVLSAIVPD_					0	0	0		nc|ENSG00000087995|Q96IZ6-2|METTL2A;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000087995|ENST00000311506|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7855834960938	2	537.3157	1072.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.658	1	23.658	23.158	24.158	0								0	0	0	0.38322	1	7258	7258		35.618	2.1027	1				17597	1770	10924	10976	17868	17868					0.08344370796953626
IFVWGLLQ	8	Unmodified	_IFVWGLLQ_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2875671386719	2	488.286746	974.558939	2.5849	0.0012621	2.3227	0.0011341	4.9075	0.0023963	488.2876292959688	41.223	0.18141	41.223	41.131	41.313	0					6	4	2	0	0	0	0.55361	1	16391	16391		54.765	1.828	1	96311	+		17598	17424	10925	10977	17869	17869					0.07064153662179251
IFWQFDMQ	8	Unmodified	_IFWQFDMQ_					0	0	0		nc|ENSG00000183166|Q9BXU9-1|CALN1;ENSG00000183166|ENST00000395275|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7528686523438	2	557.754953	1113.49535	0.11877	6.6243E-05	-2.4923	-0.0013901	-2.3736	-0.0013239	557.7535000514661	31.429	0.28169	31.429	31.248	31.529	0					13	11	2	0	0	0	0.68432	1	10398	10398		35.618	1.4457	1	74273			17599	6945	10926	10978	17870	17870					-0.056855748372299786
IGAAAGIAL	9	Unmodified	_IGAAAGIAL_					0	0	0		GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant;nc|ENSG00000130055|Q9HCC8-2|GDPD2;ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2	GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant	GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.7360534667969	2	378.734346	755.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.956	1	38.956	38.456	39.456	0								0	0	0	0.36353	1	15303	15303		21.702	0	1				17600	3619	10927	10979	17871	17871					0.06663032185610973
IGAAVAATVM	10	Unmodified	_IGAAVAATVM_					0	0	0			REV__nc|ENSG00000134216|Q9BZP6-3|CHIA	REV__nc|ENSG00000134216|Q9BZP6-3|CHIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2523193359375	2	452.252046	902.489538	-0.021786	-9.8529E-06	0.64542	0.00029189	0.62363	0.00028204	452.25216173461627	35.045	0.19317	35.045	34.969	35.162	0					14	8	2	0	0	0	0.72334	1	11469	11469		18.324	0.95945	1	66131	+		17601	14730	10928	10980	17872	17872					0.0343932665111879
IGADEILKI	9	Unmodified	_IGADEILKI_					0	0	0			REV__tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1	REV__tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2920837402344	2	486.292225	970.569897	0.828	0.00040265	-1.3732	-0.00066776	-0.54516	-0.00026511	486.2919352351793	34.487	0.79507	34.487	33.989	34.784	0					45	16	3	0	0	0	0.1115	1	13304	13304		76.774	0	1	690960	+		17602	21926	10929	10981	17873	17873					0.08343511245811897
IGAGEKFWS	9	Unmodified	_IGAGEKFWS_					0	0	0			REV__SIGLEC12|p.D196G|1|0.37|ENSG00000254521|chr19:51500141-51500141|T/C|missense_variant	REV__SIGLEC12|p.D196G|1|0.37|ENSG00000254521|chr19:51500141-51500141|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.75506591796875	2	497.753267	993.491981	2.9141	0.0014505	0.75959	0.00037809	3.6737	0.0018286	497.7536410934396	42.025	0.22695	42.025	41.906	42.133	0					14	6	3	0	0	0	0.36892	1	16733	16733		44.377	1.981	1	405880	+		17603	21516	10930	10982	17874	17874					-0.005025016195759235
IGAIVLGGIQ	10	Unmodified	_IGAIVLGGIQ_					0	0	0			REV__ENST00000592818.5_1_19:35629760-35632121:+|nuORF	REV__ENST00000592818.5_1_19:35629760-35632121:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7950134277344	2	470.794935	939.575317	-0.4306	-0.00020273	0.049518	2.3313E-05	-0.38108	-0.00017941	470.7948471220459	32.343	0.17624	32.343	32.271	32.447	0					10	7	2	0	0	0	0.56015	1	10438	10438		38.806	4.6336	1	94605	+		17604	17794	10931	10983	17875	17875					0.10311234828293436
IGALTGSTAL	10	Unmodified	_IGALTGSTAL_					0	0	0			REV__ENST00000466421.5_1_6:10723434-10730896:+|nuORF	REV__ENST00000466421.5_1_6:10723434-10730896:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2610168457031	2	452.260925	902.507297	-1.0988	-0.00049696	0.93146	0.00042126	-0.16737	-7.5695E-05	452.2613733488282	30.13	0.21099	30.13	30.036	30.247	0					15	8	3	0	0	0	0.357	1	9858	9858		60.972	4.2509	1	149220	+		17605	13982	10932	10984	17876	17876					0.052143651776077604
IGAMACRPL	9	Carbamidomethyl (C)	_IGAMAC(Carbamidomethyl (C))RPL_	IGAMAC(1)RPL		IGAMAC(46)RPL		0	1	0			REV__ENST00000512792.2_1_12:112191278-112193633:+|nuORF	REV__ENST00000512792.2_1_12:112191278-112193633:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.17474365234375	3	330.17374	987.499392	3.005	0.00099216	0.061566	2.0327E-05	3.0665	0.0010125	330.17378649221257	27.382	0.27095	27.382	27.17	27.441	0					9	5	3	0	0	0	0.35045	1	9809	9809		45.952	12.436	1	509250	+		17606	19888	10933	10985	17877	17877	699				0.005141913848433433
IGAPQSLVPG	10	Unmodified	_IGAPQSLVPG_					0	0	0			REV__ENSG00000141384|ENST00000269142|TAF4B	REV__ENSG00000141384|ENST00000269142|TAF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7686462402344	2	469.768917	937.523281	0.19879	9.3387E-05	-0.83007	-0.00038994	-0.63128	-0.00029656	469.76851878567857	20.706	0.47081	20.706	20.433	20.904	0					27	10	4	0	0	0	0.34667	1	6481	6481		62.107	12.571	1	799750	+		17607	15112	10934	10986	17878	17878					0.052020714145328384
IGAPQSLVPG	10	Unmodified	_IGAPQSLVPG_					0	0	0			REV__ENSG00000141384|ENST00000269142|TAF4B	REV__ENSG00000141384|ENST00000269142|TAF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7685546875	2	469.768917	937.523281	-0.53039	-0.00024916	-0.12156	-5.7104E-05	-0.65195	-0.00030627	469.76879445266394	20.6	0.41494	20.6	20.344	20.759	0					17	8	3	0	0	0	0.52707	1	6584	6584		42.396	1.618	1	603450	+		17608	15112	10934	10986	17879	17879					0.052020714145328384
IGAQDPRL	8	Unmodified	_IGAQDPRL_					0	0	0			REV__CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant	REV__CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2456970214844	2	435.245609	868.476666	-0.60968	-0.00026536	0.035118	1.5285E-05	-0.57457	-0.00025008	435.24574656097536	22.804	0.18863	22.804	22.694	22.883	0					7	4	2	0	0	0	0.60719	1	6860	6860		47.916	5.4411	1	100100	+		17609	12503	10935	10987	17880	17880					0.03716631583222352
IGASGVRERAL	11	Unmodified	_IGASGVRERAL_					0	0	0			REV__PTPRQ|p.G64R|1|0.25|ENSG00000139304|chr12:80445517-80445517|G/A|missense_variant	REV__PTPRQ|p.G64R|1|0.25|ENSG00000139304|chr12:80445517-80445517|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.8887939453125	3	376.887645	1127.64111	-0.12785	-4.8185E-05	2.6293	0.00099094	2.5014	0.00094276	376.8888999534821	26.562	0.19476	26.562	26.509	26.704	0					9	4	3	0	0	0	0.64626	1	8583	8583		32.751	1.2207	1	73872	+		17610	21430	10936	10988	17881	17881					0.08239024003160011
IGATPVQPLGV	11	Unmodified	_IGATPVQPLGV_					0	0	0		SLCO3A1|p.L323Wfs*13|1|0.29|ENSG00000176463|chr15:92104496-92104496|C/-|frameshift_variant;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;SLCO3A1-ATPBD4|2|fusion;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;SLCO3A1-ATPBD4|1|fusion	SLCO3A1|p.L323Wfs*13|1|0.29|ENSG00000176463|chr15:92104496-92104496|C/-|frameshift_variant	SLCO3A1|p.L323Wfs*13|1|0.29|ENSG00000176463|chr15:92104496-92104496|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.20953369140625	3	351.209725	1050.60735	-0.83198	-0.0002922	0.67472	0.00023697	-0.15726	-5.5231E-05	351.20992835810745	23.428	0.097544	23.428	23.395	23.493	0					5	3	2	0	0	0	0.75945	1	7043	7043		19.263	0.15916	1	136160			17611	6608	10937	10989	17882	17882					0.08406602511445271
IGAVSIKK	8	Unmodified	_IGAVSIKK_					0	0	0		TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant;TRDN|p.V538Cfs*8|1|0.28|ENSG00000186439|chr6:123273350-123273350|T/-|frameshift_variant;TRDN|p.T573Nfs*11|1|0.39|ENSG00000186439|chr6:123271141-123271142|-/T|frameshift_variant;TRDN|p.E606Sfs*14|1|0.05|ENSG00000186439|chr6:123260627-123260628|-/CCAAAAGGCT|frameshift_variant;ENSG00000186439|ENST00000334268|TRDN	TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant	TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	408.2710266113281	2	408.271096	814.527639	-0.096053	-3.9216E-05	-0.14121	-5.7651E-05	-0.23726	-9.6867E-05	408.27108893113626	22.119	0.096378	22.119	22.074	22.17	0					4	2	2	0	0	0	0.54629	1	6548	6548		55.504	7.5886	1	201550			17612	7137	10938	10990	17883	17883					0.11295580628075186
IGAWRNRL	8	Unmodified	_IGAWRNRL_					0	0	0		HIPK3|p.C434Afs*13|1|0.33|ENSG00000110422|chr11:33337147-33337147|T/-|frameshift_variant;nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	HIPK3|p.C434Afs*13|1|0.33|ENSG00000110422|chr11:33337147-33337147|T/-|frameshift_variant	HIPK3|p.C434Afs*13|1|0.33|ENSG00000110422|chr11:33337147-33337147|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.287353515625	2	493.288143	984.561733	-2.5793	-0.0012723	0.95312	0.00047017	-1.6261	-0.00080215	493.28872359758736	32.454	0.22667	32.454	32.378	32.605	0					14	7	3	0	0	0	0.55361	1	11288	11288		54.765	0.042324	1	139980			17613	2624	10939	10991	17884	17884					0.06883421839688708
IGCGHMIQP	9	Unmodified	_IGCGHMIQP_					0	0	0			REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2649230957031	2	478.228048	954.441542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.814	1	12.814	12.314	13.314	0								0	0	0	0.20652	1	2975	2975		50.025	2.3672	1		+		17614	15075	10940	10992	17885	17885					-0.03750070540570505
IGDAWSHL	8	Unmodified	_IGDAWSHL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;SPG11|p.P1180S|1|0.45|ENSG00000104133|chr15:44600615-44600615|G/A|missense_variant	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.7257995605469	2	449.72451	897.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.213	1	39.213	38.713	39.713	0								0	0	0	1.7419	1	15416	15416		42.474	1.9018	1				17615	2268	10941	10993	17886	17886					-0.018353438251438092
IGDESGAFLF	10	Unmodified	_IGDESGAFLF_					0	0	0			REV__nc|ENSG00000135541|Q8N157-2|AHI1	REV__nc|ENSG00000135541|Q8N157-2|AHI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2557373046875	2	528.25584	1054.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.043	1	31.043	30.543	31.543	0								0	0	0	0.38322	1	10644	10644		35.618	0	1		+		17616	14810	10942	10994	17887	17887					-0.02794242547633985
IGDISTSQI	9	Unmodified	_IGDISTSQI_					0	0	0			REV__ENST00000299045.7_1_12:106740315-106740474:+|nuORF	REV__ENST00000299045.7_1_12:106740315-106740474:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2478332519531	2	467.248015	932.481476	-1.1519	-0.00053822	0.82081	0.00038352	-0.33109	-0.0001547	467.24834353895136	33.087	0.18406	33.087	33.036	33.22	0					5	4	2	0	0	0	0.41113	1	12647	12647		40.778	1.5253	1	37610	+		17617	18194	10943	10995	17888	17888					0.01253470935353107
IGDKLINR	8	Unmodified	_IGDKLINR_					0	0	0			REV__ENST00000216268.5_1_22:50276984-50277221:+|nuORF	REV__ENST00000216268.5_1_22:50276984-50277221:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.78143310546875	2	464.782359	927.550165	-0.4404	-0.00020469	-2.4926	-0.0011585	-2.933	-0.0013632	464.78102738560375	35.997	0.26429	35.997	35.854	36.118	0					18	12	2	0	0	0	0.25873	1	11789	11789		96.19	11.275	1	272910	+		17618	17879	10944	10996	17889	17889					0.08349180025709302
IGDLRLPLLVS	11	Unmodified	_IGDLRLPLLVS_					0	0	0			REV__TMEM185B|p.P341Lfs*4|3|0.55|ENSG00000226479|chr2:120221955-120221955|G/-|frameshift_variant	REV__TMEM185B|p.P341Lfs*4|3|0.55|ENSG00000226479|chr2:120221955-120221955|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.2503356933594	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.045	1	23.045	22.545	23.545	0								0	0	0	0.45674	1	6610	6610		13.508	2.9211	1		+		17619	17630	10945	10997	17890	17890					0.14403109016711824
IGDRSLIV	8	Unmodified	_IGDRSLIV_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7637023925781	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.84	1	32.84	32.34	33.34	0								0	0	0	1.7419	1	11462	11462		31.955	0	1		+		17620	16775	10946	10998	17891	17891					0.07182088760100669
IGDTLCQKLQ	10	Unmodified	_IGDTLCQKLQ_					0	0	0		ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.7727661132812	2	559.797349	1117.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.082	1	30.082	29.582	30.582	0								0	0	0	0.37293	1	10201	10201		19.997	0	1				17621	1157	10947	10999	17892	17892					0.02605750908742266
IGEALGYPL	9	Unmodified	_IGEALGYPL_					0	0	0			REV__nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	REV__nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.25689697265625	2	466.758018	931.501483	0.39693	0.00018527	-1.518	-0.00070855	-1.1211	-0.00052328	466.7591265984262	34.686	0.28924	34.686	34.533	34.822	0					16	7	3	0	0	0	0.61124	1	12925	12925		20.482	2.1574	1	202830	+		17622	17357	10948	11000	17893	17893					0.032992666659424685
IGEEVAKK	8	Unmodified	_IGEEVAKK_					0	0	0			REV__tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	REV__tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2555847167969	2	437.255643	872.496732	0.62548	0.0002735	-1.2045	-0.00052669	-0.57906	-0.0002532	437.2550835738404	28.772	0.13234	28.772	28.686	28.818	0					6	3	2	0	0	0	0.44433	1	10217	10217		65.803	4.8312	1	172410	+		17623	21801	10949	11001	17894	17894					0.05538382523184282
IGELSNQKLK	10	Unmodified	_IGELSNQKLK_					0	0	0		ENST00000367866.6_1_1:167385133-167385376:+|nuORF	ENST00000367866.6_1_1:167385133-167385376:+|nuORF	ENST00000367866.6_1_1:167385133-167385376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.22393798828125	3	377.224034	1128.65027	0.6989	0.00026364	-3.0476	-0.0011496	-2.3487	-0.00088598	377.2225636891647	19.039	0.44322	19.039	18.702	19.145	0					11	9	2	0	0	0	0.3337	1	5823	5823		63.534	8.7575	1	1509800			17624	8918	10950	11002	17895	17895					0.09109372568832441
IGENRLVMGGP	11	Unmodified	_IGENRLVMGGP_					0	0	0		ENST00000595633.5_1_19:49949641-49950433:-|nuORF;PIH1D1|p.Q250Sfs*6|1|0.25|ENSG00000104872|chr19:49446634-49446634|G/-|frameshift_variant;ENSG00000104872|ENST00000262265|PIH1D1;ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5377502441406	3	381.537736	1141.59138	-0.51848	-0.00019782	0.2653	0.00010122	-0.25318	-9.6597E-05	381.5379513957954	25.217	0.17091	25.217	25.11	25.281	0					7	3	3	0	0	0	0.70609	1	8816	8816		27.047	0	1	307830			17625	11000	10951	11003	17896	17896					0.02624573002890429
IGEVEEGWLL	10	Unmodified	_IGEVEEGWLL_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.201416015625	3	382.201007	1143.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.282	1	30.282	29.782	30.782	0								0	0	0	0.37602	1	11193	11193		37.812	6.2817	1		+		17626	15955	10952	11004	17897	17897					0.015142885492878122
IGFCELLAP	9	Unmodified	_IGFCELLAP_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2601623535156	2	481.754421	961.494289	-0.28662	-0.00013808	1.1774	0.00056722	0.89077	0.00042913	481.75201116198775	28.807	0.30529	28.807	28.675	28.981	0					20	7	4	0	0	0	0.5654	1	9637	9637		25.45	0	1	472200	+		17627	15871	10953	11005	17898	17898					0.012002107938769768
IGFGDFVALQ	10	Unmodified	_IGFGDFVALQ_					0	0	0		ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7838134765625	2	533.782025	1065.5495	2.2953	0.0012252	1.3964	0.0007454	3.6917	0.0019706	533.7826895416478	39.12	0.22423	39.12	39.035	39.26	0					20	8	3	0	0	0	0.26198	1	14876	14876		71.877	7.6702	1	415680			17628	3361	10954	11006	17899	17899					0.01934340586012695
IGFLENKI	8	Unmodified	_IGFLENKI_					0	0	0		ENST00000502444.1_1_4:122782546-122791468:-|nuORF	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.27362060546875	2	467.273835	932.533118	0.64813	0.00030285	-2.4891	-0.0011631	-1.841	-0.00086023	467.2732101505837	35.151	0.93589	35.151	34.53	35.466	0					82	26	4	0	0	0	0.64096	1	13607	13607		42.474	1.9018	1	1241900			17629	10154	10955	11007	17900	17900					0.06415259419895847
IGFPSSAGKG	10	Unmodified	_IGFPSSAGKG_					0	0	0		ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.74676513671875	2	460.745442	919.476331	-0.093788	-4.3213E-05	2.2056	0.0010162	2.1118	0.000973	460.74671330682327	22.742	0.14474	22.742	22.65	22.795	0					5	3	2	0	0	0	0.50881	1	6840	6840		44.377	1.981	1	73655			17630	9810	10956	11008	17901	17901					0.013372118633924401
IGFVEKLQ	8	Unmodified	_IGFVEKLQ_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2732849121094	2	467.273835	932.533118	0.61428	0.00028704	-2.1481	-0.0010037	-1.5338	-0.0007167	467.27325270707763	35.065	1.0091	35.065	34.474	35.484	0					62	20	4	0	0	0	0.52345	1	13377	13377		57.811	7.7867	1	1909500			17631	9907	10957	11009	17902	17902					0.06415259419895847
IGGAWFDD	8	Unmodified	_IGGAWFDD_					0	0	0		ENST00000470499.1_1_3:131895005-131895206:+|nuORF	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.6952209472656	2	440.695418	879.376283	-0.28577	-0.00012594	-0.033716	-1.4858E-05	-0.31949	-0.0001408	440.6953594276553	27.678	0.48725	27.678	27.577	28.065	0					38	16	4	0	0	0	0.6282	1	8534	8534		44.531	3.9584	1	1492900			17632	9841	10958	11010	17903	17903					-0.06823025470430366
IGGHEGLEL	9	Unmodified	_IGGHEGLEL_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant;CHD1|p.A616Gfs*13|1|0.09|ENSG00000153922|chr5:98893560-98893561|-/GATATTATGTTTAGTGGGAATAAACC|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.74212646484375	2	462.742899	923.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.719	1	31.719	31.219	32.219	0								0	0	0	0.14807	1	10954	10954		60.294	2.4827	1				17633	5064	10959	11011	17904	17904					0.006449080007655539
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.7799377441406	2	434.778754	867.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.105	1	26.105	25.605	26.605	0								0	0	0	0.37146	1	8166	8166		19.36	4.6959	1		+		17634	12339	10960	11012	17905	17905					0.10388447425282266
IGGLVAGVIG	10	Unmodified	_IGGLVAGVIG_					0	0	0		tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.2685852050781	2	428.268553	854.522553	-0.53254	-0.00022807	-0.053207	-2.2787E-05	-0.58574	-0.00025086	428.26859996407853	33.01	0.47643	33.01	32.77	33.246	0					15	11	2	0	0	0	0.41345	1	12639	12639		54.765	0	1	53830			17635	23046	10961	11013	17906	17906					0.0894727676546836
IGGLVASIGAI	11	Unmodified	_IGGLVASIGAI_					0	0	0			REV__nc|ENSG00000100427|Q15049-2|MLC1	REV__nc|ENSG00000100427|Q15049-2|MLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.8000793457031	2	485.800217	969.585882	0.83519	0.00040574	-2.3641	-0.0011485	-1.5289	-0.00074274	485.7994759270736	40.709	0.76865	40.709	40.217	40.985	0					27	15	3	0	0	0	0.56817	1	16200	16200		39.253	3.6345	1	105680	+		17636	13553	10962	11014	17907	17907					0.09987217482705546
IGGNPTYIP	9	Unmodified	_IGGNPTYIP_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2494201660156	2	466.247818	930.481082	0.66343	0.00030932	3.6031	0.0016799	4.2665	0.0019893	466.24925094969325	26.87	0.21679	26.87	26.71	26.927	0					12	4	4	0	0	0	0.14603	1	9680	9680		68.787	1.2932	1	2945500	+		17637	17007	10963	11015	17908	17908					0.013060960061352489
IGGSIKTVPK	10	Unmodified	_IGGSIKTVPK_					0	0	0		ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.8784484863281	3	333.878087	998.612431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.244	1	22.244	21.744	22.744	0								0	0	0	0.34115	1	6258	6258		34.087	0	1				17638	1784	10964	11016	17909	17909					0.11306906374034043
IGHVAHGK	8	Unmodified	_IGHVAHGK_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.7350769042969	2	409.735212	817.455871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.569	1	14.569	14.069	15.069	0								0	0	0	1.7419	1	3577	3577		26.796	7.4361	1				17639	3666	10965	11017	17910	17910					0.03984085994227371
IGIAWGQSK	9	Unmodified	_IGIAWGQSK_					0	0	0		LTBP3|p.T309I|1|0.08|ENSG00000168056|chr11:65553469-65553469|G/A|missense_variant	LTBP3|p.T309I|1|0.08|ENSG00000168056|chr11:65553469-65553469|G/A|missense_variant	LTBP3|p.T309I|1|0.08|ENSG00000168056|chr11:65553469-65553469|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.26715087890625	2	480.269084	958.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.994	1	13.994	13.494	14.494	0								0	0	0	0.13522	1	2819	2819		63.306	1.615	1				17640	11336	10966	11018	17911	17911					0.04269491134380132
IGIDKYLY	8	Unmodified	_IGIDKYLY_					0	0	0		nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.8502197265625	3	328.851538	983.532783	-1.9071	-0.00062715	-1.6599	-0.00054585	-3.567	-0.001173	328.85090695411634	15.008	0.13273	15.008	14.94	15.073	0					14	5	4	0	0	0	0.75243	1	3275	3275		29.15	29.15	1	285030			17641	11597	10967	11019	17912	17912					0.04035839700031829
IGILPNHAP	9	Unmodified	_IGILPNHAP_					0	0	0		tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.27294921875	2	466.271627	930.528701	2.6301	0.0012263	0.53003	0.00024714	3.1601	0.0014735	466.2716886448825	37.878	0.20152	37.878	37.821	38.022	0					6	4	2	0	0	0	0.21116	1	14861	14861		60.294	1.512	1	344430			17642	22668	10968	11020	17913	17913					0.06065794996993645
IGINAISRY	9	Unmodified	_IGINAISRY_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.194091796875	3	336.194186	1005.56073	0.53513	0.00017991	-0.24105	-8.1039E-05	0.29408	9.8867E-05	336.19395670260946	22.986	2.3477	22.986	20.747	23.095	0					77	47	3	0	0	0	0.5879	1	7199	7199		17.468	1.4612	1	1115800			17643	7333	10969	11021	17914	17914					0.058171626801254206
IGIPGAAGAPG	11	Unmodified	_IGIPGAAGAPG_					0	0	0			REV__ENSG00000130635|ENST00000371817|COL5A1	REV__ENSG00000130635|ENST00000371817|COL5A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.748046875	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.516	1	36.516	36.016	37.016	0								0	0	0	0.45674	1	11977	11977		24.203	2.5004	1		+		17644	14586	10970	11022	17915	17915					0.036855157259992666
IGIRLLDEST	10	Unmodified	_IGIRLLDEST_					0	0	0			REV__nc|ENSG00000154928|P54762-5|EPHB1	REV__nc|ENSG00000154928|P54762-5|EPHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.88043212890625	3	372.880156	1115.61864	0.86093	0.00032102	0.026958	1.0052E-05	0.88789	0.00033108	372.88018357632154	20.322	0.5692	20.322	20.212	20.781	0					33	11	4	0	0	0	0.60076	1	6557	6557		31.634	0	1	3519000	+		17645	15582	10971	11023	17916	17916					0.0654537981492922
IGISNLVEK	9	Unmodified	_IGISNLVEK_					0	0	0			REV__ENSG00000166046|ENST00000299045|TCP11L2	REV__ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.78924560546875	2	486.78985	971.565146	-0.31461	-0.00015315	-0.097146	-4.7289E-05	-0.41176	-0.00020044	486.7897305901192	35.222	0.32236	35.222	35.022	35.344	0					18	8	3	0	0	0	0.35021	1	13181	13181		45.972	0	1	192590	+		17646	16088	10972	11024	17917	17917					0.07822627103053037
IGKAFGSVVT	10	Unmodified	_IGKAFGSVVT_					0	0	0			REV__tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	REV__tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.8587951660156	3	326.858804	977.554582	0.3721	0.00012162	-0.32283	-0.00010552	0.049264	1.6103E-05	326.8587372419304	21.004	0.12287	21.004	20.951	21.074	0					7	3	3	0	0	0	0.7005	1	5724	5724		33.922	6.0394	1	50743	+		17647	21880	10973	11025	17918	17918					0.06490644448626881
IGKAFGSVVT	10	Unmodified	_IGKAFGSVVT_					0	0	0			REV__tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	REV__tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.8587951660156	3	326.858804	977.554582	0.0076544	2.5019E-06	0.031098	1.0165E-05	0.038752	1.2667E-05	326.8587968433365	21.246	0.2617	21.246	21.142	21.404	0					12	5	3	0	0	0	0.54197	1	6896	6896		37.508	0	1	1783600	+		17648	21880	10973	11025	17919	17919					0.06490644448626881
IGKARSLATV	10	Unmodified	_IGKARSLATV_					0	0	0			REV__ENST00000551964.5_2_12:99039092-99039173:+|nuORF	REV__ENST00000551964.5_2_12:99039092-99039173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.2147521972656	3	339.213469	1014.61858	3.0184	0.0010239	0.75891	0.00025743	3.7773	0.0012813	339.2137355993486	34.077	0.69664	34.077	33.924	34.62	0					22	14	2	0	0	0	0.54861	1	13037	13037		40.058	0	1	1438100	+		17649	20205	10974	11026	17920	17920					0.1118542460557137
IGKCKSLSV	9	Unmodified	_IGKCKSLSV_					0	0	0		ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7729797363281	2	467.773145	933.531738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.973	1	34.973	34.473	35.473	0								0	0	0	0.2591	1	12422	12422		42.396	3.3746	1				17650	10265	10975	11027	17921	17921					0.06231302059495647
IGKECFQGK	9	Unmodified	_IGKECFQGK_					0	0	0			REV__ENST00000554512.1_1_14:50195724-50217770:+|nuORF	REV__ENST00000554512.1_1_14:50195724-50217770:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2605285644531	2	505.260402	1008.50625	3.6959	0.0018674	-3.9799	-0.0020109	-0.28405	-0.00014352	505.25860565826434	29.901	0.1044	29.901	29.812	29.916	0					7	4	2	0	0	0	0.28897	1	9765	9765		51.193	5.2204	1	49780	+		17651	20234	10976	11028	17922	17922					0.0023382753706755466
IGKGLNEKY	9	Unmodified	_IGKGLNEKY_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2873229980469	2	511.287474	1020.5604	-0.3788	-0.00019368	0.56779	0.00029031	0.18899	9.663E-05	511.28784543920506	36.132	0.39448	36.132	36.023	36.418	0					31	18	3	0	0	0	0.37197	1	12220	12220		44.117	7.67	1	261100	+		17652	16914	10977	11029	17923	17923					0.05093742960275449
IGKIVGSGTP	10	Unmodified	_IGKIVGSGTP_					0	0	0		ENST00000479298.5_1_X:100878865-100879887:+|nuORF	ENST00000479298.5_1_X:100878865-100879887:+|nuORF	ENST00000479298.5_1_X:100878865-100879887:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7763977050781	2	464.776742	927.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.067	1	27.067	26.567	27.567	0								0	0	0	0.27541	1	9643	9643		54.776	13.696	1				17653	9940	10978	11030	17924	17924					0.07226357931563143
IGKLVSPSQ	9	Unmodified	_IGKLVSPSQ_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2777099609375	2	464.776742	927.538931	-0.48443	-0.00022515	-0.12684	-5.8951E-05	-0.61127	-0.0002841	464.7766269872647	26.939	0.20566	26.939	26.82	27.026	0					11	5	3	0	0	0	0.48389	1	8729	8729		34.173	0	1	249280	+		17654	13392	10979	11031	17925	17925					0.07226357931563143
IGKQIVQQ	8	Unmodified	_IGKQIVQQ_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2767028808594	2	457.276909	912.539266	-0.62336	-0.00028505	0.023463	1.0729E-05	-0.5999	-0.00027432	457.27691556180525	16.57	0.22836	16.57	16.392	16.62	0					11	5	3	0	0	0	0.24714	1	4528	4528		106.42	3.6419	1	238240	+		17655	15124	10980	11032	17926	17926					0.07949777651435852
IGKSHQGLK	9	Unmodified	_IGKSHQGLK_					0	0	0		ENST00000368854.7_1_10:125528237-125699754:-|nuORF;CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant;CPXM2|p.A711Pfs*35|1|0.36|ENSG00000121898|chr10:123746904-123746904|C/-|frameshift_variant;ENSG00000121898|ENST00000241305|CPXM2	ENST00000368854.7_1_10:125528237-125699754:-|nuORF	ENST00000368854.7_1_10:125528237-125699754:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	323.1940612792969	3	323.194298	966.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.923	1	13.923	13.423	14.423	0								0	0	0	0.37146	1	2934	2934		26.693	8.4308	1				17656	685	10981	11033	17927	17927					0.07644582399996125
IGKSVKQQI	9	Unmodified	_IGKSVKQQI_					0	0	0			REV__nc|ENSG00000127527|Q9UBC2-4|EPS15L1	REV__nc|ENSG00000127527|Q9UBC2-4|EPS15L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.81103515625	2	500.811116	999.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.028	1	15.028	14.528	15.528	0								0	0	0	0.23445	1	3291	3291		45.972	0	1		+		17657	14491	10982	11034	17928	17928					0.10786022231286552
IGKVDACNKL	10	Unmodified	_IGKVDACNKL_					0	0	0			REV__nc|ENSG00000171053|Q8WXA2-2|PATE1	REV__nc|ENSG00000171053|Q8WXA2-2|PATE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7959594726562	2	530.794609	1059.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.22	1	21.22	20.72	21.72	0								0	0	0	0.30539	1	6113	6113		23.523	0	1		+		17658	16395	10983	11035	17929	17929					0.04726072116909563
IGKVDVSPNPL	11	Unmodified	_IGKVDVSPNPL_					0	0	0			REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.2202453613281	3	380.220401	1137.63937	0.45543	0.00017316	-0.88207	-0.00033538	-0.42663	-0.00016222	380.22004257945264	25.094	0.21444	25.094	24.974	25.188	0					8	4	2	0	0	0	0.57554	1	8870	8870		38.714	0.90257	1	160560	+		17659	12251	10984	11036	17930	17930					0.07605970194549627
IGLAAYVGL	9	Unmodified	_IGLAAYVGL_					0	0	0			REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.762939453125	2	438.763104	875.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.779	1	42.779	42.279	43.279	0								0	0	0	0.28056	1	16777	16777		39.021	0.21535	1		+		17660	13888	10985	11037	17931	17931					0.06891874391192232
IGLAELSIK	9	Unmodified	_IGLAELSIK_					0	0	0			REV__nc|ENSG00000119042|Q9UPW6-2|SATB2	REV__nc|ENSG00000119042|Q9UPW6-2|SATB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.29425048828125	2	472.294768	942.574983	0.58714	0.0002773	-1.2674	-0.00059857	-0.68022	-0.00032126	472.29427739493764	39.773	0.33553	39.773	39.6	39.936	0					21	12	3	0	0	0	0.16002	1	15619	15619		66.429	4.3219	1	242570	+		17661	14233	10986	11038	17932	17932					0.1013981510842541
IGLLSGTIAS	10	Unmodified	_IGLLSGTIAS_					0	0	0		nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2763366699219	2	466.276575	930.538597	-2.2578	-0.0010528	1.7257	0.00080464	-0.53213	-0.00024812	466.2773463883828	27.921	0.21537	27.921	27.816	28.032	0					11	5	3	0	0	0	0.44469	1	9197	9197		51.335	0	1	370340			17662	6935	10987	11039	17933	17933					0.07054938211729223
IGLTFWIPQ	9	Unmodified	_IGLTFWIPQ_					0	0	0			REV__ENST00000479939.1_1_7:30062251-30066124:-|nuORF	REV__ENST00000479939.1_1_7:30062251-30066124:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.8059692382812	2	537.80276	1073.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.895	1	18.895	18.395	19.395	0								0	0	0	0.39362	1	5021	5021		11.511	0	1		+		17663	13809	10988	11040	17934	17934					0.057115213453243996
IGLTIRNRG	9	Unmodified	_IGLTIRNRG_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.3045654296875	2	500.306532	998.598512	-2.1398	-0.0010706	-1.763	-0.00088203	-3.9028	-0.0019526	500.3057816125566	40.12	0.2607	40.12	40.035	40.295	0					16	13	2	0	0	0	0.39215	1	14260	14260		42.396	0	1	70256			17664	5506	10989	11041	17935	17935					0.09915673665614122
IGLVRIYSS	9	Unmodified	_IGLVRIYSS_					0	0	0			REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342102050781	3	336.53432	1006.58113	0.24144	8.1253E-05	-0.58312	-0.00019624	-0.34168	-0.00011499	336.5341856754467	32.883	0.45155	32.883	32.638	33.09	0					28	18	2	0	0	0	0.61124	1	10643	10643		5.5578	0	1	150080	+		17665	13537	10990	11042	17936	17936					0.07810333339944009
IGLVRSPLL	9	Unmodified	_IGLVRSPLL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	323.2148132324219	3	323.21481	966.622602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.58	1	33.58	33.08	34.08	0								0	0	0	0.40224	1	10935	10935		10.265	0	1				17666	2672	10991	11043	17937	17937					0.13795514099274442
IGLWSAFLC	9	Unmodified	_IGLWSAFLC_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;SLC4A4|p.N1031Sfs*30|1|0.06|ENSG00000080493|chr4:71560246-71560247|-/GCTAC|frameshift_variant;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7646179199219	2	505.262413	1008.51027	0.11063	5.5896E-05	-3.6684	-0.0018535	-3.5577	-0.0017976	505.26019610048553	29.903	0.31438	29.903	29.803	30.118	0					17	8	3	0	0	0	0.43426	1	10166	10166		38.806	8.9646	1	275840			17667	1638	10992	11044	17938	17938					0.006359170307632667
IGMLGRGAAL	10	Unmodified	_IGMLGRGAAL_					0	0	0			REV__ENSG00000146232|ENST00000619360|NFKBIE	REV__ENSG00000146232|ENST00000619360|NFKBIE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7817687988281	2	479.778762	957.542971	2.3019	0.0011044	2.8644	0.0013743	5.1662	0.0024787	479.78070569846983	32.346	0.42123	32.346	32.236	32.657	0					18	8	3	0	0	0	0.15764	1	12197	12197		85.359	13.482	1	813090	+		17668	15307	10993	11045	17939	17939					0.06250124153632441
IGNCDLIYQ	9	Unmodified	_IGNCDLIYQ_					0	0	0			REV__nc|ENSG00000157152|Q92777-2|SYN2	REV__nc|ENSG00000157152|Q92777-2|SYN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7520751953125	2	519.749867	1037.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.201	1	25.201	24.701	25.701	0								0	0	0	0.1633	1	7977	7977		56.721	12.604	1		+		17669	21077	10994	11046	17940	17940					-0.03206182562462345
IGNLSSPVSP	10	Unmodified	_IGNLSSPVSP_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7660217285156	2	485.763832	969.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.112	1	17.112	16.612	17.612	0								0	0	0	0.12773	1	4877	4877		74.255	10.949	1				17670	7376	10995	11047	17941	17941					0.02713463689292439
IGNLSSPVSP	10	Unmodified	_IGNLSSPVSP_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7660217285156	2	485.763832	969.513111	2.505	0.0012169	1.0148	0.00049297	3.5199	0.0017098	485.76463258302726	17.16	2.8142	17.16	16.859	19.673	0					138	57	5	0	0	0	0.41335	2	4864	4864;5342		54.776	3.4409	1	2613700			17671	7376	10995	11047	17942;17943	17942					0.02713463689292439
IGNPTSSGAL	10	Unmodified	_IGNPTSSGAL_					0	0	0			REV__ENST00000512214.1_1_4:164506888-164533886:-|nuORF	REV__ENST00000512214.1_1_4:164506888-164533886:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.73980712890625	2	458.740357	915.46616	-0.44177	-0.00020266	0.0028033	1.286E-06	-0.43896	-0.00020137	458.74033741900473	27.903	0.26285	27.903	27.763	28.026	0					10	5	2	0	0	0	0.12763	1	10040	10040		90.601	10.888	1	337080	+		17672	15274	10996	11048	17944	17944					0.005046041381433497
IGNTSKNIIQ	10	Unmodified	_IGNTSKNIIQ_					0	0	0			REV__ENST00000322602.9_1_5:153418645-153418858:+|nuORF	REV__ENST00000322602.9_1_5:153418645-153418858:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.20819091796875	3	363.208384	1086.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.923	1	26.923	26.423	27.423	0								0	0	0	0.41967	1	8521	8521		24.519	0.28737	1		+		17673	18337	10997	11049	17945	17945					0.06348513017701407
IGPAGKAGH	9	Unmodified	_IGPAGKAGH_					0	0	0			REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.2267761230469	2	404.22722	806.439886	-0.4774	-0.00019298	-0.12132	-4.9039E-05	-0.59872	-0.00024202	404.22709246226407	28.639	0.45302	28.639	28.515	28.968	0					19	11	3	0	0	0	0.43426	1	10132	10132		38.806	1.7777	1	521630	+		17674	17335	10998	11050	17946	17946					0.028923797573156662
IGPKGNSL	8	Unmodified	_IGPKGNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	393.2293395996094	2	393.229428	784.444303	-0.053071	-2.0869E-05	0.073872	2.9049E-05	0.0208	8.1793E-06	393.22944478208865	23.417	0.33564	23.417	23.21	23.546	0					18	10	2	0	0	0	0.54629	1	6763	6763		55.504	3.205	1	77768			17675	2930	10999	11051	17947	17947					0.043458441802386005
IGPKGNSL	8	Unmodified	_IGPKGNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.22930908203125	2	393.229428	784.444303	-0.17907	-7.0417E-05	0.17662	6.9451E-05	-0.0024571	-9.6621E-07	393.22945435666355	23.718	0.52765	23.718	23.433	23.961	0					21	12	2	0	0	0	0.54629	1	7888	7888		55.504	0.73953	1	417740			17676	2930	10999	11051	17948	17948					0.043458441802386005
IGPTTARAL	9	Unmodified	_IGPTTARAL_					0	0	0		ENSG00000188690|ENST00000368797|UROS;ENST00000470483.1_1_10:127477439-127483604:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF	ENSG00000188690|ENST00000368797|UROS	ENSG00000188690|ENST00000368797|UROS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2688903808594	2	450.269084	898.523616	-1.1855	-0.00053377	0.050415	2.27E-05	-1.135	-0.00051107	450.2692062122113	27.925	0.25736	27.925	27.735	27.992	0					17	9	2	0	0	0	0.46194	1	8928	8928		36.447	0.82846	1	87950			17677	7266	11000	11052	17949	17949					0.07029491134358068
IGQAAVYFQRL	11	Unmodified	_IGQAAVYFQRL_					0	0	0			REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.5714111328125	3	422.571545	1264.69281	0.86194	0.00036423	-1.2375	-0.00052291	-0.37552	-0.00015868	422.57097023452303	36.205	0.33047	36.205	36.141	36.472	0					22	9	3	0	0	0	0.60833	1	14093	14093		36.318	6.7669	1	527460	+		17678	17423	11001	11053	17950	17950					0.07104767697069292
IGQQWAQLTIG	11	Unmodified	_IGQQWAQLTIG_					0	0	0			REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.5542907714844	3	405.555784	1213.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.194	1	18.194	17.694	18.694	0								0	0	0	0.42444	1	5541	5541		31.634	3.5528	1		+		17679	17349	11002	11054	17951	17951					0.04724488426086282
IGQSLTIPI	9	Unmodified	_IGQSLTIPI_					0	0	0		ENST00000533581.1_1_1:31658018-31661124:-|nuORF	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2873840332031	2	471.286943	940.559333	-0.60529	-0.00028526	-0.38003	-0.0001791	-0.98532	-0.00046437	471.28685341034264	38.987	0.11898	38.987	38.916	39.035	0					7	4	2	0	0	0	0.2873	1	14829	14829		51.335	1.3109	1	63381			17680	10462	11003	11055	17952	17952					0.0866752859137705
IGRCELCEW	9	Unmodified	_IGRCELCEW_					0	0	0			REV__ENST00000544007.5_1_14:31028384-31077115:+|nuORF	REV__ENST00000544007.5_1_14:31028384-31077115:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.74853515625	2	554.749344	1107.48414	-1.1065	-0.00061382	-0.93511	-0.00051875	-2.0416	-0.0011326	554.7486812294217	35.005	0.76499	35.005	34.52	35.285	0					30	24	2	0	0	0	0.51817	1	12349	12349		30.504	2.6214	1	66705	+		17681	13451	11004	11056	17953	17953					-0.06530720203022611
IGRDEQPEGP	10	Unmodified	_IGRDEQPEGP_					0	0	0			REV__nc|ENSG00000112782|Q9NZA1|CLIC5	REV__nc|ENSG00000112782|Q9NZA1|CLIC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.266357421875	2	549.264727	1096.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.812	1	13.812	13.312	14.312	0								0	0	0	0.34115	1	2888	2888		44.377	5.1244	1		+		17682	20978	11005	11057	17954	17954					-0.029495272927533733
IGRERGGHI	9	Unmodified	_IGRERGGHI_					0	0	0			REV__ENST00000463052.5_1_1:29543281-29549713:-|nuORF	REV__ENST00000463052.5_1_1:29543281-29549713:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.19036865234375	3	332.189547	993.546811	0.26467	8.792E-05	2.3751	0.00078898	2.6397	0.00087689	332.19030536650547	23	0.14532	23	22.938	23.084	0					8	5	2	0	0	0	0.60749	1	6598	6598		20.947	0	1	155680	+		17683	19392	11006	11058	17955	17955					0.04977929971721551
IGRSLSGFGT	10	Unmodified	_IGRSLSGFGT_					0	0	0		tr|U7SQT5|U7SQT5_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01682PE=4SV=1	tr|U7SQT5|U7SQT5_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01682PE=4SV=1	tr|U7SQT5|U7SQT5_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01682PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.1818542480469	3	332.182058	993.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.768	1	18.768	18.268	19.268	0								0	0	0	0.4201	1	4726	4726		14.086	0	1				17684	22710	11007	11059	17956	17956					0.02732285783451971
IGSFLLWYFV	10	Unmodified	_IGSFLLWYFV_					0	0	0		SSMEM1|p.K67Rfs*11|1|0.13|ENSG00000165120|chr7:130213492-130213492|A/-|frameshift_variant;ENSG00000165120|ENST00000297819|SSMEM1	SSMEM1|p.K67Rfs*11|1|0.13|ENSG00000165120|chr7:130213492-130213492|A/-|frameshift_variant	SSMEM1|p.K67Rfs*11|1|0.13|ENSG00000165120|chr7:130213492-130213492|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.5635681152344	3	415.561987	1243.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.283	1	27.283	26.783	27.783	0								0	0	0	0.4044	1	8906	8906		29.17	1.0886	1				17685	5763	11008	11060	17957	17957					0.0520465006793529
IGSLRNMM	8	Oxidation (M)	_IGSLRNM(Oxidation (M))M_		IGSLRNM(0.896)M(0.104)		IGSLRNM(9.3)M(-9.3)	0	0	1		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant;ATM|p.K1170Nfs*11|1|0.26|ENSG00000149311|chr11:108281098-108281098|A/-|frameshift_variant;ATM|p.W1026Lfs*22|1|0.36|ENSG00000149311|chr11:108271401-108271402|-/T|frameshift_variant	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2342834472656	2	469.23333	936.452107	-0.12649	-5.9352E-05	2.6006	0.0012203	2.4741	0.0011609	469.2345572336673	18.805	0.18903	18.805	18.711	18.9	0					8	4	2	0	0	0	0.6282	1	5841	5841		44.531	8.9128	2	353840			17686	251	11009	11061	17958	17958		13			-0.018660878861510355
IGSTNFFK	8	Unmodified	_IGSTNFFK_					0	0	0			REV__tr|U7SZE0|U7SZE0_FUSNUArsenatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00789PE=3SV=1	REV__tr|U7SZE0|U7SZE0_FUSNUArsenatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00789PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.24188232421875	2	457.242535	912.470518	0.045385	2.0752E-05	-0.29421	-0.00013453	-0.24883	-0.00011378	457.24239637311143	36.177	0.24415	36.177	36.087	36.331	0					28	12	3	0	0	0	0.54629	1	11857	11857		55.504	55.504	1	233410	+		17687	22035	11010	11062	17959	17959					0.010781133517070884
IGTDPHVQK	9	Unmodified	_IGTDPHVQK_					0	0	0			REV__ENST00000436555.1_1_1:228651947-228652295:-|nuORF	REV__ENST00000436555.1_1_1:228651947-228652295:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.77410888671875	2	497.769448	993.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.852	1	15.852	15.352	16.352	0								0	0	0	0.14517	1	4417	4417		60.972	2.19	1		+		17688	14409	11011	11063	17960	17960					0.027322857834292336
IGTGGPGAIPL	11	Unmodified	_IGTGGPGAIPL_					0	0	0			REV__ENST00000476881.2_1_7:100174483-100174642:-|nuORF	REV__ENST00000476881.2_1_7:100174483-100174642:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.77606201171875	2	476.776742	951.538931	0.37303	0.00017785	-0.59069	-0.00028163	-0.21766	-0.00010377	476.7765428961236	38.59	0.47739	38.59	38.287	38.764	0					39	18	3	0	0	0	0.40284	1	14568	14568		51.335	12.529	1	402880	+		17689	19425	11012	11064	17961	17961					0.06122357931565148
IGTHFYNK	8	Unmodified	_IGTHFYNK_					0	0	0			REV__tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	REV__tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2528076171875	2	490.253434	978.492316	-0.12318	-6.0387E-05	-0.40993	-0.00020097	-0.53311	-0.00026136	490.25297302462945	28.651	0.40523	28.651	28.485	28.891	0					26	16	2	0	0	0	0.72381	1	8935	8935		30.504	0	1	67823	+		17690	22094	11013	11065	17962	17962					0.002209181002854166
IGTLICKNKK	10	Unmodified	_IGTLICKNKK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2317199707031	3	373.230243	1116.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.401	1	17.401	16.901	17.901	0								0	0	0	0.4201	1	5014	5014		23.523	1.8369	1				17691	314	11014	11066	17963	17963					0.11523210939049022
IGTNVISIE	9	Unmodified	_IGTNVISIE_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant;FAT4|p.E1642K|1|0.29|ENSG00000196159|chr4:125321335-125321335|G/A|missense_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2663879394531	2	473.266207	944.517862	0.25018	0.0001184	-0.7866	-0.00037227	-0.53642	-0.00025387	473.2660612974254	31.739	0.2579	31.739	31.613	31.871	0					14	6	3	0	0	0	0.26904	1	11579	11579		53.351	2.016	1	224740			17692	7333	11015	11067	17964	17964					0.04338347832060663
IGTREIRK	8	Unmodified	_IGTREIRK_					0	0	0			REV__ENSG00000167264|ENST00000565263|DUS2	REV__ENSG00000167264|ENST00000565263|DUS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.8698425292969	3	324.869814	971.587613	0.28856	9.3744E-05	-0.89934	-0.00029217	-0.61079	-0.00019843	324.8695932264516	18.974	0.13103	18.974	18.93	19.061	0					7	4	2	0	0	0	0.67394	1	4823	4823		37.159	0.71236	1	71142	+		17693	16178	11016	11068	17965	17965					0.10068271291333986
IGVARLNL	8	Unmodified	_IGVARLNL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000007350	REV__CON__ENSEMBL:ENSBTAP00000007350	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.2740173339844	2	428.27417	854.533787	0.23488	0.00010059	-0.27994	-0.00011989	-0.045065	-1.93E-05	428.2741216824299	31.366	0.083408	31.366	31.299	31.383	0					5	3	2	0	0	0	0.55361	1	10081	10081		54.765	4.7401	1	48597	+	+	17694	12574	11017	11069	17966	17966					0.1007009885960315
IGVFKVPLK	9	Unmodified	_IGVFKVPLK_					0	0	0		tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	tr|U7STN9|U7STN9_FUSNUGlucose-1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.8294677734375	2	500.83132	999.648088	-2.1217	-0.0010626	-1.2985	-0.00065034	-3.4202	-0.0017129	500.8306773534732	11.368	0.14859	11.368	11.312	11.46	0					19	9	3	0	0	0	0.61124	1	2143	2143		12.207	12.207	1	256500			17695	22791	11018	11070	17967	17967					0.14824988621694501
IGVPLNPLVN	10	Unmodified	_IGVPLNPLVN_					0	0	0		tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1	tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1	tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.8780517578125	3	345.878087	1034.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.581	1	26.581	26.081	27.081	0								0	0	0	0.39525	1	9531	9531		29.17	8.3329	1				17696	22963	11019	11071	17968	17968					0.09650906374031365
IGVSGGGKGLR	11	Unmodified	_IGVSGGGKGLR_					0	0	0			REV__ENST00000552478.5_1_12:56345656-56345980:+|nuORF	REV__ENST00000552478.5_1_12:56345656-56345980:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.20135498046875	3	334.201452	999.582528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.652	1	37.652	37.152	38.152	0								0	0	0	0.43372	1	14289	14289		29.551	14.218	1		+		17697	20213	11020	11072	17969	17969					0.08271967428720473
IGWVYGSN	8	Unmodified	_IGWVYGSN_					0	0	0		ENSG00000132164|ENST00000254488|SLC6A11	ENSG00000132164|ENST00000254488|SLC6A11	ENSG00000132164|ENST00000254488|SLC6A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2170715332031	2	448.21906	894.423567	-1.1758	-0.00052703	-3.2195	-0.0014431	-4.3954	-0.0019701	448.21749625096913	15.23	0.067826	15.23	15.178	15.246	0					4	2	2	0	0	0	0.77246	1	3421	3421		24.203	1.1603	1	121090			17698	3764	11021	11073	17970	17970					-0.027867461994333098
IGYEQPIVI	9	Unmodified	_IGYEQPIVI_					0	0	0			REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2909545898438	2	516.292225	1030.5699	-0.042102	-2.1737E-05	-2.4516	-0.0012658	-2.4937	-0.0012875	516.2912250936762	35.816	0.1088	35.816	35.755	35.864	0					8	5	2	0	0	0	0.39215	1	12117	12117		42.396	3.59	1	48524	+		17699	15283	11022	11074	17971	17971					0.05583511245799855
IGYKYVPEK	9	Unmodified	_IGYKYVPEK_					0	0	0		tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.8038940429688	2	548.8055	1095.59645	0.26976	0.00014804	-1.7244	-0.00094636	-1.4546	-0.00079832	548.8043888279507	26.551	0.66223	26.551	26.249	26.911	0					34	13	3	0	0	0	0.4966	1	9436	9436		32.812	0.85756	1	403690			17700	22562	11023	11075	17972	17972					0.05247200137114305
IGYLIFYII	9	Unmodified	_IGYLIFYII_					0	0	0		CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1	CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant	CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	371.88787841796875	3	372.223083	1113.64742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.236	1	21.236	20.736	21.736	0								0	0	0	0.3304	1	6120	6120		29.15	4.6304	1				17701	375	11024	11076	17973	17973					0.0951414918199589
IHARLDVD	8	Unmodified	_IHARLDVD_					0	0	0			REV__ENST00000520580.5_1_5:65460613-65466462:+|nuORF	REV__ENST00000520580.5_1_5:65460613-65466462:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7558898925781	2	469.756341	937.498129	-0.12584	-5.9114E-05	-1.2445	-0.00058463	-1.3704	-0.00064374	469.7558449511576	26.089	0.26529	26.089	25.983	26.249	0					11	5	3	0	0	0	0.64096	1	9312	9312		42.474	0	1	195330	+		17702	19948	11025	11077	17974	17974					0.02688016611944022
IHATLLEYG	9	Unmodified	_IHATLLEYG_					0	0	0		ENST00000460781.1_1_2:118709253-118753033:-|nuORF;ENSG00000125633|ENST00000376300|CCDC93	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7740783691406	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.035	1	50.035	49.535	50.535	0								0	0	0	0.09203	1	19770	19770		73.975	5.49	1				17703	3423	11026	11078	17975	17975					0.026700540689603258
IHCIVWAK	8	Unmodified	_IHCIVWAK_					0	0	0		ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2	ENSG00000126261|ENST00000246548|UBA2	ENSG00000126261|ENST00000246548|UBA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.270263671875	2	485.270573	968.526593	0.84626	0.00041067	-1.252	-0.00060755	-0.40571	-0.00019688	485.26996383183655	11.905	0.79854	11.905	11.784	12.582	0					47	23	3	0	0	0	0.78146	1	2557	2557		23.037	23.037	1	5786500			17704	3470	11027	11079	17976	17976					0.041070429875276204
IHCRPESSK	9	Unmodified	_IHCRPESSK_					0	0	0		LRRC7|p.L935*|1|0.36|ENSG00000033122|chr1:70038736-70038736|C/-|frameshift_variant;LRRC7|p.V1027Sfs*5|2|0.41|ENSG00000033122|chr1:70039009-70039010|-/A|frameshift_variant;LRRC7|p.V1027Sfs*16|1|0.28|ENSG00000033122|chr1:70039010-70039010|A/-|frameshift_variant;nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	LRRC7|p.L935*|1|0.36|ENSG00000033122|chr1:70038736-70038736|C/-|frameshift_variant	LRRC7|p.L935*|1|0.36|ENSG00000033122|chr1:70038736-70038736|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7642211914062	2	528.766383	1055.51821	-1.1743	-0.00062095	-1.3795	-0.00072941	-2.5538	-0.0013504	528.7655614470871	13.454	0.10196	13.454	13.396	13.498	0					16	5	4	0	0	0	0.17854	1	2695	2695		64.207	9.431	1	470720			17705	1156	11028	11080	17977	17977					-0.007325557197418675
IHFGGDSLVK	10	Unmodified	_IHFGGDSLVK_					0	0	0			REV__ABHD12B|p.V171I|1|0.13|ENSG00000131969|chr14:50885638-50885638|G/A|missense_variant	REV__ABHD12B|p.V171I|1|0.13|ENSG00000131969|chr14:50885638-50885638|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.1988220214844	3	358.197708	1071.57129	3.0838	0.0011046	-0.18989	-6.8017E-05	2.894	0.0010366	358.1977922958326	19.515	0.51838	19.515	19.409	19.927	0					19	10	3	0	0	0	0.47859	1	6059	6059		43.651	6.1426	1	2155700	+		17706	12043	11029	11081	17978	17978					0.03837145334568959
IHGGLPPQ	8	Unmodified	_IHGGLPPQ_					0	0	0			REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.72967529296875	2	409.729595	817.444637	-0.08895	-3.6445E-05	0.36461	0.00014939	0.27566	0.00011295	409.7297545167645	16.519	0.20452	16.519	16.442	16.646	0					10	5	3	0	0	0	0.61433	1	3946	3946		46.766	0	1	562000	+		17707	18854	11030	11082	17979	17979					0.02861263900092581
IHGTVYGL	8	Unmodified	_IHGTVYGL_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.23736572265625	2	430.237253	858.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.961	1	28.961	28.461	29.461	0								0	0	0	1.7419	1	10671	10671		21.702	0	1		+		17708	12636	11031	11083	17980	17980					0.025061306972816055
IHIHCTAKAAP	11	Unmodified	_IHIHCTAKAAP_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.3134155273438	2	581.3135	1160.61245	0.62989	0.00036617	-0.70925	-0.0004123	-0.079353	-4.6129E-05	581.3129192243995	34.864	0.14066	34.864	34.782	34.923	0					10	6	2	0	0	0	0.74306	1	11402	11402		23.523	2.5758	1	62484			17709	2136	11032	11084	17981	17981					0.03856583102378863
IHIHNPNLGL	10	Unmodified	_IHIHNPNLGL_					0	0	0			REV__FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant	REV__FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.55029296875	3	376.548852	1126.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.065	1	37.065	36.565	37.565	0								0	0	0	0.41967	1	14025	14025		24.519	1.9395	1		+		17710	15084	11033	11085	17982	17982					0.06647942837071241
IHKSGDKK	8	Unmodified	_IHKSGDKK_					0	0	0			REV__nc|ENSG00000170037|Q8N137-4|CNTROB	REV__nc|ENSG00000170037|Q8N137-4|CNTROB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.75201416015625	2	456.766709	911.518865	0.22812	0.0001042	-0.01303	-5.9518E-06	0.21508	9.8244E-05	456.766342001368	23.347	0.1496	23.347	23.251	23.401	0					5	3	2	0	0	0	0.46905	1	7081	7081		63.306	4.5243	1	29343	+		17711	12540	11034	11086	17983	17983					0.05956606991617264
IHLHHLKM	8	Unmodified	_IHLHHLKM_					0	0	0		ZNF304|p.H297R|1|0.12|ENSG00000131845|chr19:57356759-57356759|A/G|missense_variant;ENSG00000131845|ENST00000282286|ZNF304	ZNF304|p.H297R|1|0.12|ENSG00000131845|chr19:57356759-57356759|A/G|missense_variant	ZNF304|p.H297R|1|0.12|ENSG00000131845|chr19:57356759-57356759|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7945556640625	2	514.794746	1027.57494	0.12635	6.5045E-05	-0.87368	-0.00044977	-0.74733	-0.00038472	514.7942899480489	33.698	0.19648	33.698	33.612	33.808	0					13	8	2	0	0	0	0.66238	1	10975	10975		39.021	3.4032	1	139400			17712	3745	11035	11087	17984	17984					0.06225536627448491
IHLPEQDSL	9	Unmodified	_IHLPEQDSL_					0	0	0			REV__SERPINE1|p.V340I|1|0.31|ENSG00000106366|chr7:101135732-101135732|G/A|missense_variant	REV__SERPINE1|p.V340I|1|0.31|ENSG00000106366|chr7:101135732-101135732|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2762451171875	2	526.274564	1050.53457	0.4673	0.00024593	1.2837	0.00067558	1.751	0.00092151	526.2753243233145	40.673	0.17593	40.673	40.606	40.782	0					14	10	2	0	0	0	0.37197	1	13593	13593		44.117	4.864	1	75332	+		17713	21505	11036	11088	17985	17985					0.011328487180207958
IHLQPLKTQ	9	Unmodified	_IHLQPLKTQ_					0	0	0		ENST00000589420.1_1_18:32821016-32837899:+|nuORF;nc|ENSG00000186812|Q8NF99-3|ZNF397;nc|ENSG00000186812|Q8NF99-2|ZNF397;ENSG00000186812|ENST00000330501|ZNF397	ENST00000589420.1_1_18:32821016-32837899:+|nuORF	ENST00000589420.1_1_18:32821016-32837899:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3248901367188	2	539.324391	1076.63423	0.68361	0.00036869	0.31382	0.00016925	0.99742	0.00053793	539.3245667894073	35.441	0.27239	35.441	35.381	35.654	0					10	5	3	0	0	0	0.51757	1	13718	13718		37.812	0.65241	1	157440			17714	7160	11037	11089	17986	17986					0.09897711122607689
IHRCFIHL	8	Unmodified	_IHRCFIHL_					0	0	0			REV__ENST00000529652.1_1_17:80551717-80553973:+|nuORF	REV__ENST00000529652.1_1_17:80551717-80553973:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7885131835938	2	519.786921	1037.55929	1.4441	0.00075061	1.961	0.0010193	3.405	0.0017699	519.7879807446283	20.083	0.18173	20.083	19.997	20.179	0					12	5	3	0	0	0	0.49887	1	5307	5307		60.294	5.5293	1	265160	+		17715	20033	11038	11090	17987	17987					0.04201250110395449
IHRCFIHL	8	Unmodified	_IHRCFIHL_					0	0	0			REV__ENST00000529652.1_1_17:80551717-80553973:+|nuORF	REV__ENST00000529652.1_1_17:80551717-80553973:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7882080078125	2	519.786921	1037.55929	1.6555	0.00086051	0.8069	0.00041942	2.4624	0.0012799	519.7872952122775	20.372	0.16522	20.372	20.263	20.428	0					11	3	4	0	0	0	0.57802	1	6580	6580		52.299	52.299	1	3237300	+		17716	20033	11038	11090	17988	17988					0.04201250110395449
IHRCFIHL	8	Unmodified	_IHRCFIHL_					0	0	0			REV__ENST00000529652.1_1_17:80551717-80553973:+|nuORF	REV__ENST00000529652.1_1_17:80551717-80553973:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.788330078125	2	519.786921	1037.55929	1.6158	0.00083987	0.89962	0.00046761	2.5154	0.0013075	519.7873686797151	20.386	0.36506	20.386	20.277	20.642	0					12	7	3	0	0	0	0.49887	1	6454	6454		60.294	5.5293	1	3521200	+		17717	20033	11038	11090	17989	17989					0.04201250110395449
IHSDSNGLGIQ	11	Unmodified	_IHSDSNGLGIQ_					0	0	0		LIPI|p.L306Ffs*6|1|0.35|ENSG00000188992|chr21:14165269-14165270|-/A|frameshift_variant;nc|ENSG00000188992|Q6XZB0-8|LIPI;LIPI|p.L347Ffs*23|1|0.4|ENSG00000188992|chr21:14163447-14163448|-/A|frameshift_variant;nc|ENSG00000188992|Q6XZB0-7|LIPI;nc|ENSG00000188992|Q6XZB0-6|LIPI;nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-3|LIPI;ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-2|LIPI	LIPI|p.L306Ffs*6|1|0.35|ENSG00000188992|chr21:14165269-14165270|-/A|frameshift_variant	LIPI|p.L306Ffs*6|1|0.35|ENSG00000188992|chr21:14165269-14165270|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.7891235351562	2	570.785827	1139.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.853	1	33.853	33.353	34.353	0								0	0	0	0.3769	1	12994	12994		41.427	4.9799	1				17718	7287	11039	11091	17990	17990					-0.007095518843698301
IHSKQSIYKE	10	Unmodified	_IHSKQSIYKE_					0	0	0		EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant;EFCAB8|p.E1079Rfs*8|1|0.13|ENSG00000215529|chr20:32959919-32959920|-/G|frameshift_variant;ENSG00000215529|ENST00000400522|EFCAB8	EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant	EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	616.8357543945312	2	616.83532	1231.65609	0.17058	0.00010522	0.033755	2.0821E-05	0.20433	0.00012604	616.8353948083021	29.457	0.40107	29.457	29.354	29.756	0					34	14	4	0	0	0	0.60281	1	9271	9271		33.922	2.3918	1	2554300			17719	885	11040	11092	17991	17991					0.0495247108053718
IHSKQSIYKE	10	Unmodified	_IHSKQSIYKE_					0	0	0		EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant;EFCAB8|p.E1079Rfs*8|1|0.13|ENSG00000215529|chr20:32959919-32959920|-/G|frameshift_variant;ENSG00000215529|ENST00000400522|EFCAB8	EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant	EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.8358764648438	2	616.83532	1231.65609	-0.45307	-0.00027947	0.23284	0.00014363	-0.22022	-0.00013584	616.8355292222078	29.691	1.0088	29.691	29.557	30.566	0					68	25	6	0	0	0	0.60281	1	10784	10784		33.922	3.6039	1	16885000			17720	885	11040	11092	17992	17992					0.0495247108053718
IHSPFTTIL	9	Unmodified	_IHSPFTTIL_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2;nc|ENSG00000169402|B2RC85-2|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7942504882812	2	514.792392	1027.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.952	1	33.952	33.452	34.452	0								0	0	0	0.18645	1	12960	12960		55.504	5.4797	1				17721	5113	11041	11093	17993	17993					0.057549309656678815
IHVITNPY	8	Unmodified	_IHVITNPY_					0	0	0			REV__CACNA1B|p.D1073Y|1|0.31|ENSG00000148408|chr9:138025103-138025103|G/T|missense_variant	REV__CACNA1B|p.D1073Y|1|0.31|ENSG00000148408|chr9:138025103-138025103|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.76416015625	2	478.763635	955.512717	-0.65966	-0.00031582	-2.3301	-0.0011156	-2.9898	-0.0014314	478.7636239936919	33.974	0.61557	33.974	33.549	34.165	0					32	13	3	0	0	0	0.6282	1	12887	12887		44.531	2.0566	1	320090	+		17722	12312	11042	11094	17994	17994					0.03318088760090632
IHYMLGKV	8	Unmodified	_IHYMLGKV_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1;ENST00000496016.1_1_22:24483558-24487884:+|nuORF	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.771240234375	2	480.770406	959.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.758	1	17.758	17.258	18.258	0								0	0	0	1.7419	1	4298	4298		37.028	0.58173	1				17723	1956	11043	11095	17995	17995					0.04487623267687013
IIAFVLEGK	9	Unmodified	_IIAFVLEGK_					0	0	0		nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2;ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.3046875	2	495.305136	988.595718	0.93026	0.00046076	-1.6825	-0.00083334	-0.75221	-0.00037258	495.3040999352831	44.348	0.20214	44.348	44.289	44.491	0					13	8	2	0	0	0	0.22823	1	17777	17777		69.628	16.276	1	47292			17724	5009	11044	11096	17996	17996					0.10096405488081928
IIAKVTAKK	9	Unmodified	_IIAKVTAKK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.33355712890625	2	486.334227	970.653902	0.01215	5.909E-06	-0.95479	-0.00046435	-0.94264	-0.00045844	486.33368898556984	15.947	0.087863	15.947	15.891	15.979	0					9	4	3	0	0	0	0.048471	1	3547	3547		95.815	21.84	1	82906			17725	5112	11045	11097	17997	17997					0.16740087133371162
IIAKVTAKK	9	Unmodified	_IIAKVTAKK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.3341979980469	2	486.334227	970.653902	-0.2942	-0.00014308	0.0084661	4.1174E-06	-0.28574	-0.00013896	486.33425541327136	16.311	0.1371	16.311	16.225	16.362	0					8	3	3	0	0	0	0.02953	1	4382	4382		109.48	27.238	1	1282100			17726	5112	11045	11097	17998	17998					0.16740087133371162
IIAKVTAKK	9	Unmodified	_IIAKVTAKK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.3346862792969	2	486.334227	970.653902	-1.2404	-0.00060327	1.9649	0.0009556	0.72446	0.00035233	486.33532855508935	15.995	0.066635	15.995	15.953	16.02	0					4	2	2	0	0	0	0.037924	1	3748	3748		101.25	16.337	1	92092			17727	5112	11045	11097	17999	17999					0.16740087133371162
IIAKVTAKK	9	Unmodified	_IIAKVTAKK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.3338928222656	2	486.334227	970.653902	0.64276	0.00031259	-1.1452	-0.00055696	-0.50246	-0.00024436	486.3335663244893	16.271	0.16829	16.271	16.162	16.331	0					10	3	4	0	0	0	0.19605	1	4631	4631		62.107	8.756	1	1279900			17728	5112	11045	11097	18000	18000					0.16740087133371162
IIAKVTAKK	9	Unmodified	_IIAKVTAKK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.3340759277344	2	486.334227	970.653902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.033	1	16.033	15.533	16.533	0								0	0	0	0.0075199	1	3714	3714		112.41	19.215	1				17729	5112	11045	11097	18001	18001					0.16740087133371162
IIAKVTAKK	9	Unmodified	_IIAKVTAKK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.3343200683594	2	486.334227	970.653902	0.82879	0.00040307	-0.71938	-0.00034986	0.10941	5.321E-05	486.33383956126426	16.191	0.11927	16.191	16.131	16.251	0					4	2	2	0	0	0	0.056004	1	4446	4446		93.143	10.903	1	818040			17730	5112	11045	11097	18002	18002					0.16740087133371162
IICEHSRRGE	10	Unmodified	_IICEHSRRGE_					0	0	0			REV__ENSG00000050165|ENST00000683431|DKK3	REV__ENSG00000050165|ENST00000683431|DKK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	600.2981567382812	2	600.301121	1198.58769	-0.57723	-0.00034651	-2.5504	-0.001531	-3.1276	-0.0018775	600.2991459221493	29.169	0.20369	29.169	29.084	29.287	0					20	8	3	0	0	0	0.66185	1	9458	9458		26.693	1.1189	1	145930	+		17731	13030	11046	11098	18003	18003					-0.0036609677099477267
IIEPSLRQL	9	Unmodified	_IIEPSLRQL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.8245239257812	2	534.824224	1067.63389	1.7901	0.00095739	-0.96443	-0.0005158	0.82568	0.00044159	534.8236931443442	40.543	0.2857	40.543	40.391	40.676	0					25	11	3	0	0	0	0.028876	1	15950	15950		110.12	11.538	1	412150			17732	7854	11047	11099	18004	18004					0.10278291402732975
IIEPSLRQL	9	Unmodified	_IIEPSLRQL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8247680664062	2	534.824224	1067.63389	1.8588	0.00099411	-0.87756	-0.00046934	0.98121	0.00052477	534.8236829557563	40.495	0.2869	40.495	40.342	40.629	0					19	6	4	0	0	0	0.063823	1	16069	16069		90.37	16.395	1	584400			17733	7854	11047	11099	18005	18005					0.10278291402732975
IIERVTGLPA	10	Unmodified	_IIERVTGLPA_					0	0	0		ENST00000495399.1_1_9:72435845-72472969:+|nuORF;ENST00000466872.2_1_9:72435815-72501795:+|nuORF;nc|ENSG00000204711|Q5VTT2-2|CFAP95;ENST00000529131.5_1_9:72435824-72520897:+|nuORF;ENSG00000204711|ENST00000377197|CFAP95	ENST00000495399.1_1_9:72435845-72472969:+|nuORF	ENST00000495399.1_1_9:72435845-72472969:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.8251953125	2	534.824224	1067.63389	0.16736	8.9506E-05	0.57472	0.00030737	0.74207	0.00039688	534.82468131962	40.563	0.22498	40.563	40.442	40.667	0					17	8	3	0	0	0	0.39827	1	15448	15448		56.434	10.482	1	152310			17734	7721	11048	11100	18006	18006					0.10278291402755713
IIFEFFVQN	9	Unmodified	_IIFEFFVQN_					0	0	0		CELSR2-KIAA1324|1|fusion;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000490758.6_1_1:109656894-109730836:+|nuORF	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.8032836914062	2	578.8055	1155.59645	-1.6681	-0.00096549	-1.2941	-0.00074903	-2.9622	-0.0017145	578.8046687966295	31.589	0.31567	31.589	31.463	31.778	0					24	8	4	0	0	0	0.15163	1	10867	10867		51.335	23.453	1	744490			17735	469	11049	11101	18007	18007					0.02487200137147738
IIFFLCAGL	9	Unmodified	_IIFFLCAGL_					0	0	0			REV__ENST00000335793.3_1_17:71280809-71281388:-|nuORF	REV__ENST00000335793.3_1_17:71280809-71281388:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7825012207031	2	498.782982	995.55141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.181	1	13.181	12.681	13.681	0								0	0	0	0.21213	1	3148	3148		49.211	5.094	1		+		17736	18410	11050	11102	18008	18008					0.05345678070250415
IIFGLSTLK	9	Unmodified	_IIFGLSTLK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.3124084472656	2	496.312961	990.611368	-0.35792	-0.00017764	-0.33584	-0.00016668	-0.69376	-0.00034432	496.3126522903682	46.807	0.12232	46.807	46.731	46.854	0					12	7	2	0	0	0	0.2873	1	17239	17239		51.335	8.9393	1	119390	+		17737	15994	11051	11103	18009	18009					0.11568692005141656
IIGSQGRLTG	10	Unmodified	_IIGSQGRLTG_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2902526855469	2	501.290548	1000.56654	2.9248	0.0014662	-0.86347	-0.00043285	2.0613	0.0010333	501.2890016917355	48.15	0.75984	48.15	47.794	48.554	0					110	40	4	0	0	0	0.46989	1	19200	19200		36.447	4.9169	1	326500	+		17738	14320	11052	11104	18010	18010					0.06628261191804086
IIGSTNNEI	9	Unmodified	_IIGSTNNEI_					0	0	0			REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7530212402344	2	480.753464	959.492375	-2.9239	-0.0014057	2.1261	0.0010221	-0.79786	-0.00038357	480.7542047538439	22.33	0.14314	22.33	22.233	22.376	0					6	3	2	0	0	0	0.27249	1	6643	6643		52.937	1.744	1	113050	+		17739	21763	11053	11105	18011	18011					0.011008733096218748
IIGTIFIIK	9	Unmodified	_IIGTIFIIK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3404235839844	2	509.338978	1016.6634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.648	1	49.648	49.148	50.148	0								0	0	0	0.073265	1	18666	18666		79.451	16.145	1				17740	7689	11054	11106	18012	18012					0.1557385541890426
IIGTIFIIK	9	Unmodified	_IIGTIFIIK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.33953857421875	2	509.338978	1016.6634	-0.041292	-2.1032E-05	1.1223	0.00057163	1.081	0.0005506	509.33941979155674	49.582	0.28078	49.582	49.493	49.774	0					26	13	3	0	0	0	0.034359	1	19601	19601		104.75	19.831	1	247820			17741	7689	11054	11106	18013	18013					0.1557385541890426
IIHAVIQEY	9	Unmodified	_IIHAVIQEY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.3035888671875	2	543.303124	1084.5917	-1.4913	-0.00081022	-2.0759	-0.0011279	-3.5672	-0.0019381	543.3037017851282	35.837	0.11333	35.837	35.773	35.887	0					9	4	3	0	0	0	0.45358	1	12809	12809		37.159	2.9866	1	50921			17742	1402	11055	11107	18014	18014					0.05278315994382865
IIIAEVVNK	9	Unmodified	_IIIAEVVNK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.8156433105469	2	499.815867	997.617182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.557	1	35.557	35.057	36.057	0								0	0	0	0.00097936	1	13343	13343		127.46	42.546	1				17743	3556	11056	11108	18015	18015					0.11827790516804271
IIIAEVVNK	9	Unmodified	_IIIAEVVNK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8154602050781	2	499.815867	997.617182	0.88003	0.00043986	-1.1338	-0.00056668	-0.25375	-0.00012683	499.8151079004902	35.537	0.22506	35.537	35.459	35.684	0					12	6	2	0	0	0	0.07136	1	13789	13789		87.696	21.267	1	307410			17744	3556	11056	11108	18016	18016					0.11827790516804271
IIIAEVVNK	9	Unmodified	_IIIAEVVNK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.8159484863281	2	499.815867	997.617182	0.16132	8.0631E-05	0.90193	0.0004508	1.0633	0.00053143	499.8162391438964	35.344	0.10385	35.344	35.285	35.388	0					7	4	2	0	0	0	0.087861	1	12585	12585		82.241	24.788	1	35675			17745	3556	11056	11108	18017	18017					0.11827790516804271
IIIAEVVNK	9	Unmodified	_IIIAEVVNK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.8156433105469	2	499.815867	997.617182	-0.6967	-0.00034822	0.61052	0.00030515	-0.086183	-4.3075E-05	499.8161202671086	35.492	0.22132	35.492	35.381	35.603	0					10	4	3	0	0	0	0.063823	1	13697	13697		90.37	31.588	1	399060			17746	3556	11056	11108	18018	18018					0.11827790516804271
IIKKPDLR	8	Unmodified	_IIKKPDLR_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.8236389160156	2	491.824027	981.633501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.557	1	30.557	30.057	31.057	0								0	0	0	1.7419	1	9752	9752		20.482	2.1574	1				17747	6578	11057	11109	18019	18019					0.1419491647355926
IIKSCPLPS	9	Unmodified	_IIKSCPLPS_					0	0	0			REV__ENSG00000176485|ENST00000415826|PLAAT3	REV__ENSG00000176485|ENST00000415826|PLAAT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2773742675781	2	479.275521	956.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.67	1	48.67	48.17	49.17	0								0	0	0	0.32356	1	14776	14776		30.504	5.0535	1		+		17748	16658	11058	11110	18020	18020					0.05648186202256511
IILENHVAV	9	Unmodified	_IILENHVAV_					0	0	0			REV__GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	REV__GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.445	1	36.445	35.945	36.945	0								0	0	0	0.37496	1	14194	14194		13.454	0	1		+		17749	15464	11059	11111	18021	18021					0.07810333339944009
IILEPKSMA	9	Unmodified	_IILEPKSMA_					0	0	0			REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29010009765625	2	501.288628	1000.5627	2.9229	0.0014652	1.1287	0.00056579	4.0516	0.002031	501.2891031474993	48.693	0.47458	48.693	48.567	49.041	0					41	25	2	0	0	0	0.58342	1	19311	19311		23.042	11.531	1	94509	+		17750	17337	11060	11112	18022	18022					0.06244455373735036
IILHLSGATK	10	Unmodified	_IILHLSGATK_					0	0	0		nc|ENSG00000166342|Q8TDF5-1|NETO1;NETO1|p.F138Lfs*29|1|0.36|ENSG00000166342|chr18:72858881-72858881|A/-|frameshift_variant;nc|ENSG00000166342|Q8TDF5-2|NETO1;ENSG00000166342|ENST00000327305|NETO1	nc|ENSG00000166342|Q8TDF5-1|NETO1	nc|ENSG00000166342|Q8TDF5-1|NETO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	351.55322265625	3	351.553603	1051.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.371	1	13.371	12.871	13.871	0								0	0	0	0.4201	1	2617	2617		11.097	0	1				17751	5889	11061	11113	18023	18023					0.11522595265364544
IILMLMAVVF	10	Unmodified	_IILMLMAVVF_					0	0	0		tr|U7SNG9|U7SNG9_FUSNUS-adenosylmethionineuptaketransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01752PE=4SV=1	tr|U7SNG9|U7SNG9_FUSNUS-adenosylmethionineuptaketransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01752PE=4SV=1	tr|U7SNG9|U7SNG9_FUSNUS-adenosylmethionineuptaketransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01752PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.3463745117188	2	575.342349	1148.67015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.797	1	54.797	54.297	55.297	0								0	0	0	0.38459	1	16042	16042		35.201	16.876	1				17752	22682	11062	11114	18024	18024					0.10175708983592813
IIMGMATEL	9	Oxidation (M)	_IIMGM(Oxidation (M))ATEL_		IIM(0.016)GM(0.984)ATEL		IIM(-18)GM(18)ATEL	0	0	1			REV__ENSG00000163993|ENST00000296370|S100P	REV__ENSG00000163993|ENST00000296370|S100P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7512512207031	2	497.751021	993.48749	-0.055969	-2.7858E-05	1.0058	0.00050066	0.94987	0.0004728	497.7513483331017	28.51	0.39419	28.51	28.395	28.789	0					35	16	3	0	0	0	0.16524	1	8914	8914		65.803	17.888	2	253150	+		17753	15945	11063	11115	18025	18025		611			-0.009514701490047628
IINKSAQPL	9	Unmodified	_IINKSAQPL_					0	0	0			REV__ENST00000480134.5_2_1:33478679-33478739:-|nuORF	REV__ENST00000480134.5_2_1:33478679-33478739:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2948303222656	2	492.297842	982.581131	-0.55307	-0.00027228	-1.6801	-0.00082709	-2.2331	-0.0010994	492.2979227448375	35.314	0.51323	35.314	34.943	35.457	0					19	13	2	0	0	0	0.42902	1	13233	13233		39.253	0.44669	1	183970	+		17754	19584	11064	11116	18026	18026					0.08914333339930636
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7869567871094	2	488.787307	975.560061	-0.09164	-4.4793E-05	-0.34518	-0.00016872	-0.43682	-0.00021351	488.7870812760192	23.505	0.38193	23.505	23.406	23.788	0					36	13	4	0	0	0	0.067603	1	6799	6799		89.029	16.15	1	3069700			17755	5559	11065	11117	18027	18027					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7868957519531	2	488.787307	975.560061	0.76842	0.00037559	-1.0326	-0.00050473	-0.2642	-0.00012914	488.78686052663073	23.837	0.45276	23.837	23.691	24.144	0					32	10	6	0	0	0	0.0059342	1	7936	7936		154.01	57.821	1	20194000			17756	5559	11065	11117	18028	18028					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.78704833984375	2	488.787307	975.560061	-1.2507	-0.0006113	0.78859	0.00038545	-0.46206	-0.00022585	488.78765579018324	23.547	0.28938	23.547	23.454	23.743	0					28	10	4	0	0	0	0.099758	1	7082	7082		79.489	21.259	1	1801400			17757	5559	11065	11117	18029	18029					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7873840332031	2	488.787307	975.560061	-0.077065	-3.7668E-05	-0.29647	-0.00014491	-0.37354	-0.00018258	488.787162932238	23.771	0.36606	23.771	23.663	24.029	0					24	7	5	0	0	0	0.00014666	1	8220	8220		191.45	65.207	1	9861100			17758	5559	11065	11117	18030	18030					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7872009277344	2	488.787307	975.560061	0.52637	0.00025728	-1.0515	-0.00051397	-0.52515	-0.00025669	488.7867699147992	23.582	0.21524	23.582	23.486	23.701	0					16	5	4	0	0	0	0.0079272	1	7209	7209		145.46	44.001	1	2094800			17759	5559	11065	11117	18031	18031					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7870178222656	2	488.787307	975.560061	-0.17556	-8.581E-05	-0.29667	-0.00014501	-0.47223	-0.00023082	488.7871191033196	23.565	0.2862	23.565	23.474	23.76	0					20	7	4	0	0	0	0.0014418	1	7223	7223		178.55	74.534	1	2177800			17760	5559	11065	11117	18032	18032					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7874755859375	2	488.787307	975.560061	-0.51704	-0.00025272	0.57666	0.00028187	0.059621	2.9142E-05	488.7874827043665	23.739	0.5136	23.739	23.634	24.147	0					29	10	5	0	0	0	0.0034376	1	8078	8078		166.07	56.632	1	18137000			17761	5559	11065	11117	18033	18033					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.787353515625	2	488.787307	975.560061	0.78486	0.00038363	-1.1472	-0.00056075	-0.36237	-0.00017712	488.7868186826673	23.724	0.5118	23.724	23.619	24.13	0					27	10	5	0	0	0	0.0059342	1	8093	8093		154.01	69.096	1	18895000			17762	5559	11065	11117	18034	18034					0.07130323240414782
IIPHELIRT	9	Unmodified	_IIPHELIRT_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.55706787109375	3	364.557236	1090.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.839	1	32.839	32.339	33.339	0								0	0	0	0.30504	1	10985	10985		34.173	6.2903	1				17763	2502	11066	11118	18035	18035					0.10817997639651367
IIPKPFPW	8	Unmodified	_IIPKPFPW_					0	0	0		tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.20147705078125	3	333.200501	996.579674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.526	1	43.526	43.026	44.026	0								0	0	0	1.7419	1	15074	15074		19.36	0.25645	1				17764	22667	11067	11119	18036	18036					0.08124744041845133
IIPPADHPSGY	11	Unmodified	_IIPPADHPSGY_					0	0	0		nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-8|NFATC1	nc|ENSG00000131196|O95644-8|NFATC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.797119140625	2	583.795663	1165.57677	3.2215	0.0018807	-0.17269	-0.00010082	3.0488	0.0017799	583.7956607272545	43.019	0.81248	43.019	42.573	43.385	0					50	25	3	0	0	0	0.61618	1	17114	17114		35.618	1.6967	1	377650			17765	3708	11068	11120	18037	18037					0.0006082412637624657
IIPRPWSRP	9	Unmodified	_IIPRPWSRP_					0	0	0			REV__ENST00000483984.5_1_3:52440843-52441978:-|nuORF	REV__ENST00000483984.5_1_3:52440843-52441978:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.33349609375	2	561.33255	1120.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.961	1	18.961	18.461	19.461	0								0	0	0	0.32356	1	4815	4815		30.504	2.6214	1		+		17766	19371	11069	11121	18038	18038					0.09504837079362005
IIPVGKGG	8	Unmodified	_IIPVGKGG_					0	0	0		ENSG00000092295|ENST00000206765|TGM1;TGM1|p.S190T|1|0.51|ENSG00000092295|chr14:24260638-24260638|C/G|missense_variant	ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.73590087890625	2	370.736889	739.459225	-2.0952	-0.00077677	-1.1691	-0.00043341	-3.2643	-0.0012102	370.73631007741614	48.288	0.30128	48.288	48.188	48.489	0					34	18	3	0	0	0	0.7914	1	16039	16039		14.664	5.1935	1	220290			17767	1873	11070	11122	18039	18039					0.07907336048231173
IIQAKTRSL	9	Unmodified	_IIQAKTRSL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3245239257812	2	515.324391	1028.63423	0.18499	9.5329E-05	0.41175	0.00021218	0.59674	0.00030751	515.3246868487686	21.349	0.15123	21.349	21.263	21.414	0					9	4	3	0	0	0	0.1424	1	5872	5872		69.628	12.907	1	178700			17768	7502	11071	11123	18040	18040					0.1210571112260368
IIQAKTRSL	9	Unmodified	_IIQAKTRSL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3245239257812	2	515.324391	1028.63423	0.029002	1.4945E-05	0.18112	9.3335E-05	0.21012	0.00010828	515.3245285875239	21.69	0.14154	21.69	21.596	21.738	0					8	3	3	0	0	0	0.032383	1	6938	6938		106.68	24.443	1	1754000			17769	7502	11071	11123	18041	18041					0.1210571112260368
IIQAKTRSL	9	Unmodified	_IIQAKTRSL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.32470703125	2	515.324391	1028.63423	0.061137	3.1505E-05	0.41546	0.0002141	0.4766	0.0002456	515.3247791889191	21.388	0.11667	21.388	21.337	21.453	0					7	3	3	0	0	0	0.19605	1	6135	6135		62.107	14.192	1	196250			17770	7502	11071	11123	18042	18042					0.1210571112260368
IIQAKTRSL	9	Unmodified	_IIQAKTRSL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.324462890625	2	515.324391	1028.63423	-0.50092	-0.00025813	0.73917	0.00038091	0.23825	0.00012278	515.3247721648381	21.6	0.1667	21.6	21.492	21.658	0					8	3	3	0	0	0	0.063171	1	7197	7197		90.601	24.172	1	1409100			17771	7502	11071	11123	18043	18043					0.1210571112260368
IIQAKTRSL	9	Unmodified	_IIQAKTRSL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3240966796875	2	515.324391	1028.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.5	1	21.5	21	22	0								0	0	0	0.17378	1	6244	6244		54.776	12.38	1				17772	7502	11071	11123	18044	18044					0.1210571112260368
IIQPNYPA	8	Unmodified	_IIQPNYPA_					0	0	0		ENST00000473735.1_1_10:135216152-135233666:+|nuORF;ENST00000460848.5_1_10:135215574-135233666:+|nuORF;ENSG00000148824|ENST00000317502|MTG1	ENST00000473735.1_1_10:135216152-135233666:+|nuORF	ENST00000473735.1_1_10:135216152-135233666:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2501220703125	2	458.25036	914.486168	0.72201	0.00033086	-1.1422	-0.00052343	-0.42022	-0.00019257	458.2498526140432	35.54	0.33346	35.54	35.382	35.716	0					23	9	3	0	0	0	0.6282	1	13768	13768		44.531	2.0566	1	603880			17773	4852	11072	11124	18045	18045					0.0255039986874408
IISGMVKLEK	10	Unmodified	_IISGMVKLEK_					0	0	0		SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant;nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant	SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.3366088867188	2	559.33611	1116.65767	1.0901	0.00060971	-0.87655	-0.00049029	0.21351	0.00011942	559.3354149018528	24.601	0.15349	24.601	24.506	24.66	0					6	3	2	0	0	0	0.46128	1	7709	7709		49.536	8.1094	1	69636			17774	6347	11073	11125	18046	18046					0.10400388844914232
IISSALKN	8	Unmodified	_IISSALKN_					0	0	0		ENST00000489256.5_1_2:242051898-242052042:-|nuORF	ENST00000489256.5_1_2:242051898-242052042:-|nuORF	ENST00000489256.5_1_2:242051898-242052042:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.2580871582031	2	423.258185	844.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.858	1	21.858	21.358	22.358	0								0	0	0	1.7419	1	6412	6412		30.504	0	1				17775	10056	11074	11126	18047	18047					0.07334686385797795
IISTVEVLK	9	Unmodified	_IISTVEVLK_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000531486.1_1_17:45681241-45696545:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3155822753906	2	501.3157	1000.61685	0.67935	0.00034057	-0.68978	-0.0003458	-0.010426	-5.2268E-06	501.31525655700955	36.021	0.27998	36.021	35.942	36.222	0					19	7	4	0	0	0	0.095583	1	13548	13548		80.455	5.4113	1	768040			17776	4435	11075	11127	18048	18048					0.11656370796936244
IISTVEVLK	9	Unmodified	_IISTVEVLK_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000531486.1_1_17:45681241-45696545:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.3154602050781	2	501.3157	1000.61685	0.033924	1.7007E-05	0.79709	0.0003996	0.83102	0.0004166	501.3160632823882	35.995	0.26472	35.995	35.896	36.161	0					19	8	4	0	0	0	0.12834	1	13984	13984		72.879	5.3856	1	339590			17777	4435	11075	11127	18049	18049					0.11656370796936244
IITEGASILQ	10	Unmodified	_IITEGASILQ_					0	0	0		PPP3CA|p.R73Q|1|0.3|ENSG00000138814|chr4:101195957-101195957|C/T|missense_variant	PPP3CA|p.R73Q|1|0.3|ENSG00000138814|chr4:101195957-101195957|C/T|missense_variant	PPP3CA|p.R73Q|1|0.3|ENSG00000138814|chr4:101195957-101195957|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7734985351562	2	522.800414	1043.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.318	1	20.318	19.818	20.818	0								0	0	0	0.29716	1	6566	6566		51.335	12.083	1				17778	11964	11076	11128	18050	18050					0.06622592411918049
IITHNIAI	8	Unmodified	_IITHNIAI_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-3|SPG11	REV__nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.7733154296875	2	447.774003	893.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.788	1	37.788	37.288	38.288	0								0	0	0	1.7419	1	12764	12764		47.916	0	1		+		17779	13711	11077	11129	18051	18051					0.08242679139755182
IITVDPKPK	9	Unmodified	_IITVDPKPK_					0	0	0		tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.8154296875	2	505.815867	1009.61718	-0.74162	-0.00037512	0.54592	0.00027613	-0.1957	-9.899E-05	505.8161437349401	35.503	0.27807	35.503	35.367	35.645	0					25	13	2	0	0	0	0.54267	1	11992	11992		27.882	3.6795	1	156920			17780	22991	11078	11130	18052	18052					0.11275790516799589
IIVDPTTGK	9	Unmodified	_IIVDPTTGK_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;PLK2|p.E130*|1|0.03|ENSG00000145632|chr5:58458832-58458833|-/A|frameshift_variant;PLK2|p.E130Vfs*4|1|0.05|ENSG00000145632|chr5:58458831-58458832|-/GAGAA|frameshift_variant;ENST00000514306.1_1_5:57754443-57755636:-|nuORF;ENST00000504196.1_1_5:57754793-57755897:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2764587402344	2	472.276575	942.538597	0.61275	0.00028939	-1.3281	-0.00062724	-0.71537	-0.00033785	472.27588125241397	26.991	0.25611	26.991	26.858	27.114	0					10	6	2	0	0	0	0.36892	1	9369	9369		44.377	0	1	109650			17781	4680	11079	11131	18053	18053					0.06502938211713172
IIVGNPKAL	9	Unmodified	_IIVGNPKAL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.7963562011719	2	462.797478	923.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.308	1	32.308	31.808	32.808	0								0	0	0	0.23459	1	10436	10436		45.952	19.156	1				17782	950	11080	11132	18054	18054					0.11555538690890899
IIVGNPKAL	9	Unmodified	_IIVGNPKAL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7973327636719	2	462.797478	923.580402	-0.71394	-0.00033041	0.40598	0.00018788	-0.30796	-0.00014252	462.7975776619852	32.565	0.33992	32.565	32.369	32.709	0					13	8	2	0	0	0	0.16524	1	11982	11982		65.803	10.299	1	170360			17783	950	11080	11132	18055	18055					0.11555538690890899
IIVGNPKAL	9	Unmodified	_IIVGNPKAL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.79632568359375	2	462.797478	923.580402	-0.2932	-0.00013569	-0.53722	-0.00024862	-0.83042	-0.00038431	462.797402747956	32.319	0.22432	32.319	32.203	32.428	0					10	6	2	0	0	0	0.14734	1	11223	11223		68.485	23.954	1	84386			17784	950	11080	11132	18056	18056					0.11555538690890899
IIVGNPKAL	9	Unmodified	_IIVGNPKAL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7969970703125	2	462.797478	923.580402	-2.4379	-0.0011283	1.9926	0.00092217	-0.44531	-0.00020609	462.7982801346986	32.321	0.28725	32.321	32.188	32.476	0					12	8	2	0	0	0	0.1236	1	11229	11229		73.975	19.08	1	84802			17785	950	11080	11132	18057	18057					0.11555538690890899
IIVIVCVDK	9	Carbamidomethyl (C)	_IIVIVC(Carbamidomethyl (C))VDK_	IIVIVC(1)VDK		IIVIVC(44)VDK		0	1	0		ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8194580078125	2	529.817553	1057.62055	2.3409	0.0012402	1.6483	0.00087329	3.9892	0.0021135	529.8184763379966	27.547	0.38462	27.547	27.335	27.72	0					19	9	3	0	0	0	0.37197	1	9627	9627		44.117	9.9443	1	558620			17786	6769	11081	11133	18058	18058	289				0.0940471729913952
IIVVILSMAD	10	Unmodified	_IIVVILSMAD_					0	0	0			REV__ENST00000513762.2_1_4:2909397-2910421:+|nuORF	REV__ENST00000513762.2_1_4:2909397-2910421:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.220458984375	3	358.547349	1072.62022	3.0869	0.0011068	2.7474	0.00098508	5.8343	0.0020919	358.5483436636486	29.295	0.70435	29.295	29.126	29.83	0					17	6	3	0	0	0	0.63073	1	10651	10651		35.152	5.982	1	337520	+		17787	19894	11082	11134	18059	18059					0.08681297579300917
IIVVPLTD	8	Unmodified	_IIVVPLTD_					0	0	0			REV__ENST00000556539.5_1_12:56737175-56743495:-|nuORF	REV__ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.26904296875	2	435.270761	868.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.012	1	56.012	55.512	56.512	0								0	0	0	1.7419	1	16258	16258		15.636	0.97212	1		+		17788	16368	11083	11135	18060	18060					0.08744741188377247
IIWLNPDVK	9	Unmodified	_IIWLNPDVK_					0	0	0			REV__nc|ENSG00000142606|Q495T6-3|MMEL1	REV__nc|ENSG00000142606|Q495T6-3|MMEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.30078125	2	549.321317	1096.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.594	1	13.594	13.094	14.094	0								0	0	0	0.20989	1	3192	3192		26.693	0	1		+		17789	15154	11084	11136	18061	18061					0.08363192891079052
IIYEEDKEL	9	Unmodified	_IIYEEDKEL_					0	0	0			REV__tr|U7SUD3|U7SUD3_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01385PE=4SV=1	REV__tr|U7SUD3|U7SUD3_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01385PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2979125976562	2	576.295162	1150.57577	3.2986	0.001901	0.79756	0.00045963	4.0962	0.0023606	576.2958215360823	40.574	0.27905	40.574	40.469	40.748	0					25	6	5	0	0	0	0.098791	1	16106	16106		79.713	0.26157	1	2692700	+		17790	21971	11085	11137	18062	18062					0.006505649668270053
IIYNKDKED	9	Unmodified	_IIYNKDKED_					0	0	0		tr|U7T5F8|U7T5F8_FUSNUNADkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadKPE=3SV=1	tr|U7T5F8|U7T5F8_FUSNUNADkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadKPE=3SV=1	tr|U7T5F8|U7T5F8_FUSNUNADkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadKPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2940063476562	2	569.292953	1136.57135	3.4444	0.0019609	-1.3345	-0.00075975	2.1098	0.0012011	569.2921040075735	21.163	0.41158	21.163	21.059	21.471	0					24	8	5	0	0	0	0.07136	1	6833	6833		87.696	10.379	1	2608500			17791	23011	11086	11138	18063	18063					0.008531005438953798
IIYQGQYKK	9	Unmodified	_IIYQGQYKK_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.8247680664062	2	570.824224	1139.63389	-0.00099057	-5.6544E-07	0.82805	0.00047267	0.82706	0.00047211	570.824825160343	21.172	0.094076	21.172	21.123	21.217	0					6	2	3	0	0	0	0.087582	1	6695	6695		82.305	23.523	1	370140			17792	2296	11087	11139	18064	18064					0.06966291402750358
IKCWGLVL	8	Unmodified	_IKCWGLVL_					0	0	0			REV__ENST00000525154.1_1_11:9779377-9779509:-|nuORF	REV__ENST00000525154.1_1_11:9779377-9779509:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2763366699219	2	466.275324	930.536095	-0.91185	-0.00042517	2.2823	0.0010642	1.3705	0.00063902	466.27628301903025	36.302	0.16498	36.302	36.22	36.385	0					12	8	2	0	0	0	0.68754	1	12296	12296		35.201	4.6971	1	53562	+		17793	19984	11088	11140	18065	18065					0.06804811273036648
IKDKNSFPLF	10	Unmodified	_IKDKNSFPLF_					0	0	0		RICTOR|p.F1087L|1|0.37|ENSG00000164327|chr5:38950587-38950587|G/T|missense_variant	RICTOR|p.F1087L|1|0.37|ENSG00000164327|chr5:38950587-38950587|G/T|missense_variant	RICTOR|p.F1087L|1|0.37|ENSG00000164327|chr5:38950587-38950587|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	605.3383178710938	2	604.837331	1207.66011	-1.9142	-0.0011578	-1.2878	-0.0007789	-3.202	-0.0019367	604.836443279119	36.016	0.208	36.016	35.925	36.133	0					17	7	3	0	0	0	0.45669	1	12844	12844		30.318	1.1477	1	165690			17794	22347	11089	11141	18066	18066					0.06458560574219518
IKDYKSIR	8	Unmodified	_IKDYKSIR_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.8033447265625	2	511.803291	1021.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.536	1	24.536	24.036	25.036	0								0	0	0	1.7419	1	8273	8273		32.812	8.6097	1		+		17795	21888	11090	11142	18067	18067					0.08209735714240196
IKEISLCCY	9	Unmodified	_IKEISLCCY_					0	0	0			REV__ENST00000423432.6_1_X:71483217-71483493:+|nuORF	REV__ENST00000423432.6_1_X:71483217-71483493:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2254638671875	2	536.264296	1070.51404	1.8393	0.00098637	2.5867	0.0013872	4.4261	0.0023735	536.2659858501421	12.761	0.18331	12.761	12.671	12.854	0					9	4	3	0	0	0	0.5879	1	2982	2982		23.042	2.0956	1	745570	+		17796	19099	11091	11143	18068	18068					-0.018397812576722572
IKEKALIDMY	10	Unmodified	_IKEKALIDMY_					0	0	0		ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.3403930664062	2	612.338849	1222.66315	2.9658	0.0018161	-0.60982	-0.00037342	2.356	0.0014427	612.3385761763253	11.007	0.10259	11.007	10.981	11.084	0					9	6	2	0	0	0	0.51121	1	2100	2100		44.117	44.117	1	64766			17797	7964	11092	11144	18069	18069					0.06072067636728207
IKEQHTRQI	9	Unmodified	_IKEQHTRQI_					0	0	0			REV__nc|ENSG00000048991|Q15032-4|R3HDM1	REV__nc|ENSG00000048991|Q15032-4|R3HDM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.88751220703125	3	384.887645	1151.64111	0.8465	0.00032581	-0.91003	-0.00035026	-0.063525	-2.445E-05	384.88717822392687	18.673	0.25637	18.673	18.559	18.816	0					10	6	3	0	0	0	0.085655	1	5507	5507		82.75	0	1	247890	+		17798	20927	11093	11145	18070	18070					0.07135024003173385
IKEREQKTL	9	Unmodified	_IKEREQKTL_					0	0	0			REV__tr|U7T3F9|U7T3F9_FUSNUPACdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00261PE=4SV=1	REV__tr|U7T3F9|U7T3F9_FUSNUPACdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00261PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.2279357910156	3	382.227667	1143.66117	0.45171	0.00017266	0.16433	6.281E-05	0.61603	0.00023547	382.22769623455906	18.536	0.11837	18.536	18.476	18.595	0					6	2	3	0	0	0	0.40353	1	5719	5719		41.427	0.34655	1	219460	+		17799	22134	11094	11146	18071	18071					0.09508774943151366
IKETCMKY	8	Carbamidomethyl (C)	_IKETC(Carbamidomethyl (C))MKY_	IKETC(1)MKY		IKETC(42)MKY		0	1	0			REV__ENST00000483417.1_1_19:3575543-3576359:+|nuORF	REV__ENST00000483417.1_1_19:3575543-3576359:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7615356445312	2	536.76192	1071.50929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.669	1	29.669	29.169	30.169	0								0	0	0	1.7419	1	9680	9680		42.396	10.441	1		+		17800	13111	11095	11147	18072	18072	511				-0.023606654004424854
IKFKEKHQM	9	Unmodified	_IKFKEKHQM_					0	0	0			REV__ENST00000437043.7_1_5:96211855-96211888:+|nuORF	REV__ENST00000437043.7_1_5:96211855-96211888:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8328247070312	2	594.831526	1187.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.458	1	13.458	12.958	13.958	0								0	0	0	0.25587	1	3128	3128		14.865	3.9993	1		+		17801	19210	11096	11148	18073	18073					0.062180402792364475
IKFKKSSNQ	9	Unmodified	_IKFKKSSNQ_					0	0	0			REV__MAMDC2|p.F586Sfs*12|1|0.2|ENSG00000165072|chr9:70218438-70218438|T/-|frameshift_variant	REV__MAMDC2|p.F586Sfs*12|1|0.2|ENSG00000165072|chr9:70218438-70218438|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.5450439453125	3	360.545108	1078.61349	-0.92476	-0.00033342	1.1261	0.00040601	0.20134	7.2592E-05	360.5454762989473	22.172	0.073683	22.172	22.132	22.206	0					4	2	2	0	0	0	0.50858	1	6493	6493		25.126	4.2888	1	144510	+		17802	16018	11097	11149	18074	18074					0.07733120742932442
IKGDGEVLE	9	Unmodified	_IKGDGEVLE_					0	0	0		chr12:122982045-122982469|268|100.74|0.0|23.26|+|1|None,ARL6IP4|1;ENST00000540708.5_1_12:123466944-123467130:+|nuORF;ENST00000539576.5_1_12:123466944-123467220:+|nuORF;ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4	chr12:122982045-122982469|268|100.74|0.0|23.26|+|1|None,ARL6IP4|1	chr12:122982045-122982469|268|100.74|0.0|23.26|+|1|None,ARL6IP4|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2557678222656	2	480.25584	958.497126	-0.11108	-5.3346E-05	-0.4102	-0.000197	-0.52128	-0.00025035	480.255635282603	31.562	0.42885	31.562	31.398	31.827	0					17	9	2	0	0	0	0.15163	1	11873	11873		67.494	12.717	1	449330			17803	516	11098	11150	18075	18075					0.016217574523807343
IKGKESKPAK	10	Unmodified	_IKGKESKPAK_					0	0	0			REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3381958007812	2	543.337498	1084.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.244	1	13.244	12.744	13.744	0								0	0	0	0.4162	1	3026	3026		25.574	0	1		+		17804	12463	11099	11151	18076	18076					0.12149980294066154
IKGLELNKG	9	Unmodified	_IKGLELNKG_					0	0	0			REV__TACC3|p.H666R|1|0.09|ENSG00000013810|chr4:1739757-1739757|A/G|missense_variant	REV__TACC3|p.H666R|1|0.09|ENSG00000013810|chr4:1739757-1739757|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.5342102050781	3	324.53432	970.581131	0.28864	9.3673E-05	-0.28486	-9.2447E-05	0.0037763	1.2255E-06	324.5341940798109	19.461	0.20475	19.461	19.361	19.566	0					13	6	3	0	0	0	0.37197	1	5030	5030		35.152	0	1	1237600	+		17805	12919	11100	11152	18077	18077					0.09466333339946686
IKKEELQEL	9	Unmodified	_IKKEELQEL_					0	0	0		DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1;ENST00000479518.1_1_13:96236855-96239862:-|nuORF;ENST00000485031.5_1_13:96234490-96239991:-|nuORF	DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant	DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.3276977539062	2	565.326796	1128.63904	0.31132	0.000176	-0.031458	-1.7784E-05	0.27986	0.00015821	565.3270277237488	26.532	0.48645	26.532	26.44	26.927	0					38	11	5	0	0	0	0.0030642	1	9154	9154		168.26	5.1075	1	7591200			17806	864	11101	11153	18078	18078					0.07986550474697651
IKKLASSLPD	10	Unmodified	_IKKLASSLPD_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant;CEP350|p.N516Ifs*4|1|0.33|ENSG00000135837|chr1:180013997-180013997|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.3242797851562	2	536.324057	1070.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.494	1	40.494	39.994	40.994	0								0	0	0	0.24873	1	14379	14379		58.23	1.7961	1				17807	486	11102	11154	18079	18079					0.10106871682887686
IKKPADKN	8	Unmodified	_IKKPADKN_					0	0	0			REV__ENSG00000188282|ENST00000697321|RUFY4	REV__ENSG00000188282|ENST00000697321|RUFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2769470214844	2	457.276909	912.539266	0.22658	0.00010361	-0.49985	-0.00022857	-0.27327	-0.00012496	457.2768018094567	34.781	0.13843	34.781	34.717	34.855	0					7	5	2	0	0	0	0.54629	1	12340	12340		55.504	0	1	58903	+		17808	17163	11103	11155	18080	18080					0.07949777651413115
IKKRRAKS	8	Unmodified	_IKKRRAKS_					0	0	0			REV__ENSG00000106089|ENST00000222812|STX1A	REV__ENSG00000106089|ENST00000222812|STX1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.5584411621094	3	329.55757	985.650882	1.673	0.00055137	0.90499	0.00029825	2.578	0.00084961	329.55787721233753	27.854	0.31257	27.854	27.746	28.059	0					18	6	4	0	0	0	0.79719	1	10032	10032		14.865	0.72775	1	1601500	+		17809	13494	11104	11156	18081	18081					0.15748256799213323
IKLVCQMNL	9	Unmodified	_IKLVCQMNL_					0	0	0		ENST00000415659.2_1_5:122364834-122372365:-|nuORF	ENST00000415659.2_1_5:122364834-122372365:-|nuORF	ENST00000415659.2_1_5:122364834-122372365:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2970581054688	2	531.29593	1060.57731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.231	1	15.231	14.731	15.731	0								0	0	0	0.3693	1	3275	3275		12.959	0	1				17810	9347	11105	11157	18082	18082					0.04944204250227813
IKMHLAPGR	9	Unmodified	_IKMHLAPGR_					0	0	0		nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7980651855469	2	511.800029	1021.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.991	1	39.991	39.491	40.491	0								0	0	0	0.36266	1	15748	15748		21.96	1.4781	1				17811	5848	11106	11158	18083	18083					0.07557519281863279
IKMKKTCI	8	Unmodified	_IKMKKTCI_					0	0	0		ENST00000522378.5_1_8:27633943-27633997:+|nuORF	ENST00000522378.5_1_8:27633943-27633997:+|nuORF	ENST00000522378.5_1_8:27633943-27633997:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.1937561035156	3	322.194253	963.560929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.192	1	24.192	23.692	24.692	0								0	0	0	1.7419	1	7505	7505		23.042	0	1				17812	10329	11107	11159	18084	18084					0.07769123084108287
IKMWSHLY	8	Unmodified	_IKMWSHLY_					0	0	0			REV__PTPRB|p.P401Lfs*55|1|0.07|ENSG00000127329|chr12:70590158-70590158|G/-|frameshift_variant	REV__PTPRB|p.P401Lfs*55|1|0.07|ENSG00000127329|chr12:70590158-70590158|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2830810546875	2	539.281137	1076.54772	1.9929	0.0010748	1.7677	0.00095331	3.7607	0.0020281	539.2820022745535	33.808	0.23308	33.808	33.698	33.931	0					8	6	2	0	0	0	0.59411	1	12551	12551		50.025	2.1089	1	130970	+		17813	21428	11108	11160	18085	18085					0.012510082964126923
IKNGLVKL	8	Unmodified	_IKNGLVKL_					0	0	0		nc|ENSG00000150961|O94855-2|SEC24D;ENSG00000150961|ENST00000280551|SEC24D	nc|ENSG00000150961|O94855-2|SEC24D	nc|ENSG00000150961|O94855-2|SEC24D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7999572753906	2	442.80002	883.585488	0.50585	0.00022399	-0.9946	-0.00044041	-0.48875	-0.00021642	442.7995178099937	33.762	0.27433	33.762	33.646	33.92	0					11	7	2	0	0	0	0.24777	1	12960	12960		105.27	9.2211	1	1340300			17814	4939	11109	11161	18086	18086					0.13903842553509094
IKNGLVKL	8	Unmodified	_IKNGLVKL_					0	0	0		nc|ENSG00000150961|O94855-2|SEC24D;ENSG00000150961|ENST00000280551|SEC24D	nc|ENSG00000150961|O94855-2|SEC24D	nc|ENSG00000150961|O94855-2|SEC24D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7994079589844	2	442.80002	883.585488	2.6121	0.0011566	-3.1369	-0.001389	-0.5248	-0.00023238	442.7985050410062	33.744	0.42294	33.744	33.566	33.989	0					13	9	2	0	0	0	0.34985	1	12859	12859		76.847	11.043	1	1204900			17815	4939	11109	11161	18087	18087					0.13903842553509094
IKNGWAGAP	9	Unmodified	_IKNGWAGAP_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.248046875	2	457.248152	912.481751	-0.62302	-0.00028487	0.4357	0.00019922	-0.18732	-8.5651E-05	457.2483804635707	25.324	0.31458	25.324	25.226	25.541	0					13	7	3	0	0	0	0.47428	1	8647	8647		35.201	3.2459	1	453920	+		17816	14120	11110	11162	18088	18088					0.022009354458418784
IKNKVSGLVQ	10	Unmodified	_IKNKVSGLVQ_					0	0	0			REV__ENST00000529360.1_1_11:6232738-6236214:-|nuORF	REV__ENST00000529360.1_1_11:6232738-6236214:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.3386840820312	2	543.337498	1084.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.211	1	28.211	27.711	28.711	0								0	0	0	0.41137	1	9944	9944		27.047	0.3544	1		+		17817	13034	11111	11163	18089	18089					0.12149980294066154
IKNNNTIQGG	10	Unmodified	_IKNNNTIQGG_					0	0	0			REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.787109375	2	529.783087	1057.55162	3.4448	0.001825	3.1761	0.0016827	6.6209	0.0035076	529.7853722927895	26.375	0.81651	26.375	26.068	26.885	0					42	16	5	0	0	0	0.3337	1	9229	9229		63.534	4.7519	1	3050000	+		17818	22100	11112	11164	18090	18090					0.025147693238295687
IKNSRIEPK	9	Unmodified	_IKNSRIEPK_					0	0	0		HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|2|1|sense	HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|2|1|sense	HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|2|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.22210693359375	3	362.220624	1083.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.901	1	50.901	50.401	51.401	0								0	0	0	0.35899	1	18264	18264		17.468	2.7743	1				17819	11202	11113	11165	18091	18091					0.10156809634258934
IKPISQEPGPN	11	Unmodified	_IKPISQEPGPN_					0	0	0			REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	590.322021484375	2	590.322045	1178.62954	-1.7705	-0.0010452	3.2021	0.0018903	1.4316	0.0008451	590.3240123549232	39.996	0.2068	39.996	39.909	40.116	0					17	11	2	0	0	0	0.64626	1	14226	14226		32.751	0	1	92114	+		17820	14665	11114	11166	18092	18092					0.047367821892066786
IKPKPVTFQ	9	Unmodified	_IKPKPVTFQ_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8244018554688	2	529.32386	1056.63317	1.2285	0.00065025	-3.0015	-0.0015888	-1.7731	-0.00093853	529.3217134866076	27.938	0.17549	27.938	27.828	28.003	0					7	4	2	0	0	0	0.48623	1	9209	9209		26.693	0	1	35425			17821	5274	11115	11167	18093	18093					0.10711496753697247
IKPLCNPHK	9	Unmodified	_IKPLCNPHK_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.3020629882812	2	525.299862	1048.58517	3.4454	0.0018099	0.74199	0.00038977	4.1874	0.0021996	525.3003253600841	12.519	0.52357	12.519	12.439	12.963	0					23	12	4	0	0	0	0.51817	1	2691	2691		30.504	30.504	1	3207200	+		17822	12906	11116	11168	18094	18094					0.06282099562008625
IKPTNLEK	8	Unmodified	_IKPTNLEK_					0	0	0		nc|ENSG00000164542|Q8NCT3-5|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2;nc|ENSG00000164542|Q8NCT3-4|MATCAP2;ENST00000493327.1_1_7:36396426-36406798:-|nuORF;nc|ENSG00000164542|Q8NCT3-3|MATCAP2;nc|ENSG00000164542|Q8NCT3-2|MATCAP2;nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7835693359375	2	471.784567	941.554582	-0.39599	-0.00018682	0.21896	0.0001033	-0.17703	-8.352E-05	471.78475131297904	17.454	0.20116	17.454	17.323	17.524	0					13	7	2	0	0	0	0.78142	1	4144	4144		23.042	1.0826	1	122990			17823	5703	11117	11169	18095	18095					0.08146644448606821
IKQSIVEL	8	Unmodified	_IKQSIVEL_					0	0	0		DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.D2341Tfs*111|1|0.32|ENSG00000187775|chr17:78486305-78486305|G/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.28631591796875	2	465.286943	928.559333	-0.82488	-0.00038381	-0.18142	-8.4414E-05	-1.0063	-0.00046822	465.28676555758113	32.368	0.091557	32.368	32.298	32.39	0					8	4	2	0	0	0	0.74405	1	10784	10784		27.882	3.6795	1	54536			17824	814	11118	11170	18096	18096					0.09219528591370363
IKRRKNKRELS	11	Unmodified	_IKRRKNKRELS_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	714.4512329101562	2	714.449508	1426.88446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.686	1	42.686	42.186	43.186	0								0	0	0	0.45674	1	16743	16743		11.636	2.453	1		+		17825	13703	11119	11171	18097	18097					0.1880968844805011
IKRTPNNVVS	10	Unmodified	_IKRTPNNVVS_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.55572509765625	3	376.555895	1126.64586	0.26974	0.00010157	-0.60031	-0.00022605	-0.33057	-0.00012448	376.55569735801686	32.539	0.21418	32.539	32.454	32.668	0					9	5	2	0	0	0	0.57211	1	11964	11964		37.508	4.7576	1	337020			17826	4057	11120	11172	18098	18098					0.0875990814593024
IKSQNSQESTA	11	Unmodified	_IKSQNSQESTA_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.2932739257812	2	596.793849	1191.57314	-1.8324	-0.0010936	-0.99271	-0.00059244	-2.8251	-0.001686	596.7932801733501	37.481	0.36636	37.481	37.318	37.685	0					45	18	3	0	0	0	0.67983	1	13383	13383		29.551	6.9711	1	602340			17827	4622	11121	11173	18099	18099					-0.014978904381223401
IKTMSIMDF	9	Unmodified	_IKTMSIMDF_					0	0	0		ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.271728515625	2	543.272121	1084.52969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.206	1	33.206	32.706	33.706	0								0	0	0	0.32356	1	11127	11127		30.504	0	1				17828	5538	11122	11174	18100	18100					-0.009194947406285792
IKTQLAQHK	9	Unmodified	_IKTQLAQHK_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;ENST00000487754.2_1_6:56350034-56354383:-|nuORF	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.82275390625	2	533.822015	1065.62948	1.8038	0.00096293	-0.04678	-2.4972E-05	1.7571	0.00093796	533.8219224746899	13.054	0.10467	13.054	13.006	13.111	0					4	2	2	0	0	0	0.1424	1	2946	2946		69.628	0.78148	1	176400			17829	854	11123	11175	18101	18101					0.09928826979853511
IKTTDTYIE	9	Unmodified	_IKTTDTYIE_					0	0	0		tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2831420898438	2	542.282054	1082.54956	0.3157	0.0001712	1.5997	0.00086748	1.9154	0.0010387	542.282755627183	36.188	0.1413	36.188	36.101	36.242	0					7	4	2	0	0	0	0.2873	1	14086	14086		51.335	0	1	159890			17830	22949	11124	11176	18102	18102					0.01158295795335107
IKVFAHVT	8	Unmodified	_IKVFAHVT_					0	0	0		ENST00000229795.7_2_6:36078211-36078337:+|nuORF	ENST00000229795.7_2_6:36078211-36078337:+|nuORF	ENST00000229795.7_2_6:36078211-36078337:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7760314941406	2	457.776545	913.538538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.98	1	13.98	13.48	14.48	0								0	0	0	1.7419	1	2956	2956		20.482	3.1169	1				17831	8197	11125	11177	18103	18103					0.07830983002372705
IKVGNLEI	8	Unmodified	_IKVGNLEI_					0	0	0		tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.27374267578125	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.214	1	34.214	33.714	34.714	0								0	0	0	1.7419	1	13168	13168		53.351	2.016	1				17832	22587	11126	11178	18104	18104					0.08623259419891838
IKVWAVACF	9	Unmodified	_IKVWAVACF_					0	0	0		AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant;ENSG00000134698|ENST00000373210|AGO4	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.1938171386719	3	346.193129	1035.55756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.817	1	32.817	32.317	33.317	0								0	0	0	0.3693	1	12084	12084		19.997	1.6724	1				17833	95	11127	11179	18105	18105					0.04120196301755641
IKWEEVHCE	9	Unmodified	_IKWEEVHCE_					0	0	0			REV__ENST00000607391.5_1_6:159462930-159463077:+|nuORF	REV__ENST00000607391.5_1_6:159462930-159463077:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.2802124023438	2	586.773874	1171.53319	3.1989	0.001877	0.72923	0.0004279	3.9281	0.0023049	587.2767507418675	34.611	1.0497	34.611	34.212	35.262	0					71	21	5	0	0	0	0.41113	1	13203	13203		40.778	1.5253	1	892460	+		17834	20623	11128	11180	18106	18106					-0.04571108642426225
IKWSEAQST	9	Unmodified	_IKWSEAQST_					0	0	0			REV__nc|ENSG00000142784|Q8N5D0-6|WDTC1	REV__nc|ENSG00000142784|Q8N5D0-6|WDTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.26708984375	2	525.266739	1048.51892	0.56102	0.00029468	0.16468	8.6503E-05	0.7257	0.00038119	525.2668419248557	19.744	0.31829	19.744	19.541	19.859	0					12	6	3	0	0	0	0.27249	1	6172	6172		52.937	1.744	1	382680	+		17835	21048	11129	11181	18107	18107					-0.00339437799038933
ILAAIAGSVK	10	Unmodified	_ILAAIAGSVK_					0	0	0		RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant;RNASEL|p.F383Sfs*7|1|0.23|ENSG00000135828|chr1:182585661-182585661|C/-|frameshift_variant;RNASEL|p.M644*|2|0.18|ENSG00000135828|chr1:182576365-182576365|T/-|frameshift_variant;RNASEL|p.M644Nfs*3|2|0.29|ENSG00000135828|chr1:182576364-182576365|-/T|frameshift_variant;nc|ENSG00000135828|Q05823-2|RNASEL;RNASEL|p.R651Kfs*11|2|0.31|ENSG00000135828|chr1:182576343-182576344|-/T|frameshift_variant;ENSG00000135828|ENST00000367559|RNASEL	RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant	RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.802490234375	2	471.80276	941.590967	-0.55914	-0.0002638	-0.044256	-2.088E-05	-0.6034	-0.00028468	471.80271439509943	28.066	0.21795	28.066	27.959	28.177	0					8	4	2	0	0	0	0.24256	1	10138	10138		74.255	2.3776	1	315640			17836	4024	11130	11182	18108	18108					0.11783521345341796
ILAEKCGSY	9	Unmodified	_ILAEKCGSY_					0	0	0			REV__nc|ENSG00000145850|Q96H15-2|TIMD4	REV__nc|ENSG00000145850|Q96H15-2|TIMD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2486877441406	2	492.24696	982.479368	2.7278	0.0013428	0.45399	0.00022347	3.1818	0.0015662	492.24732945941446	22.813	0.21759	22.813	22.705	22.922	0					11	4	3	0	0	0	0.2873	1	7656	7656		51.335	3.4199	1	1125400	+		17837	15290	11131	11183	18109	18109					-0.012572810741289686
ILAEKLVSI	9	Unmodified	_ILAEKLVSI_					0	0	0			REV__tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1	REV__tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.3184814453125	2	493.318243	984.621933	-0.50167	-0.00024748	0.79925	0.00039428	0.29758	0.0001468	493.31873476742726	43.087	0.15129	43.087	42.984	43.135	0					12	7	2	0	0	0	0.30841	1	16267	16267		49.536	5.1589	1	67765	+		17838	21734	11132	11184	18110	18110					0.12900674659545075
ILAGDVKVK	9	Unmodified	_ILAGDVKVK_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000119669|ENST00000238647|IRF2BPL;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.8028564453125	2	471.80276	941.590967	-0.016184	-7.6356E-06	0.40068	0.00018904	0.3845	0.00018141	471.8028668298906	27.849	0.1333	27.849	27.782	27.915	0					6	4	2	0	0	0	0.16806	1	8641	8641		65.465	3.358	1	101630			17839	6075;3126	11133	11185	18111	18111					0.11783521345330428
ILAIPPPK	8	Unmodified	_ILAIPPPK_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.78375244140625	2	424.783839	847.553125	-0.37223	-0.00015812	-0.091549	-3.8889E-05	-0.46377	-0.000197	424.78380707088206	34.253	0.35815	34.253	34.101	34.46	0					14	7	3	0	0	0	0.527	1	13102	13102		57.453	10.686	1	320950	+		17840	21255	11134	11186	18112	18112					0.12325055150506614
ILATGITEI	9	Unmodified	_ILATGITEI_					0	0	0			REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.777587890625	2	465.778951	929.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.681	1	46.681	46.181	47.181	0								0	0	0	0.35507	1	18673	18673		24.203	2.5004	1		+		17841	21800	11135	11187	18113	18113					0.07575822354453976
ILCSRRHTN	9	Carbamidomethyl (C)	_ILC(Carbamidomethyl (C))SRRHTN_	ILC(1)SRRHTN		ILC(53)SRRHTN		0	1	0			REV__ENST00000442177.1_1_2:209073395-209073674:+|nuORF	REV__ENST00000442177.1_1_2:209073395-209073674:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.8043212890625	2	578.803831	1155.59311	-0.053597	-3.1022E-05	-0.010399	-6.0192E-06	-0.063996	-3.7041E-05	578.8037738785514	31.819	0.54086	31.819	31.64	32.181	0					37	13	5	0	0	0	0.27249	1	11586	11586		52.937	12.159	1	4662400	+		17842	19248	11136	11188	18114	18114	688				0.021536268114914492
ILDIRKNVK	9	Unmodified	_ILDIRKNVK_					0	0	0		GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000141404|P38405|GNAL;ENST00000590972.1_1_18:11752889-11825012:+|nuORF	GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant	GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.2327880859375	3	366.904636	1097.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.051	1	14.051	13.551	14.551	0								0	0	0	0.2591	1	3339	3339		33.922	0	1				17843	4442	11137	11189	18115	18115					0.14713973048037587
ILDKENLK	8	Unmodified	_ILDKENLK_					0	0	0			REV__tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	REV__tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.78936767578125	2	486.78985	971.565146	-0.085039	-4.1396E-05	-0.21705	-0.00010566	-0.30209	-0.00014706	486.7896834352724	31.636	0.25545	31.636	31.524	31.78	0					10	5	3	0	0	0	0.26534	1	11955	11955		94.006	0	1	207740	+		17844	22071	11138	11190	18116	18116					0.078226271030303
ILDQALSNAQ	10	Unmodified	_ILDQALSNAQ_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7874145507812	2	536.785296	1071.55604	-0.41545	-0.00022301	2.9636	0.0015908	2.5482	0.0013678	536.7867576861107	25.251	0.19391	25.251	25.127	25.321	0					10	6	3	0	0	0	0.58189	1	7843	7843		36.447	4.9169	1	74340			17845	5852	11139	11191	18117	18117					0.02312233746692982
ILDQNRIF	8	Unmodified	_ILDQNRIF_					0	0	0		ENST00000476321.5_1_1:110279982-110280760:-|nuORF;ENST00000488824.1_1_1:110279695-110282569:-|nuORF;ENSG00000134202|ENST00000361066|GSTM3	ENST00000476321.5_1_1:110279982-110280760:-|nuORF	ENST00000476321.5_1_1:110279982-110280760:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7878723144531	2	509.787641	1017.56073	-0.014807	-7.5486E-06	0.67529	0.00034425	0.66048	0.0003367	509.78777592103177	41.386	0.20649	41.386	41.284	41.491	0					16	10	2	0	0	0	0.58597	1	15713	15713		40.573	1.7665	1	138780			17846	3896	11140	11192	18118	18118					0.05265162680143476
ILDSKDVVI	9	Unmodified	_ILDSKDVVI_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2967224121094	2	501.297507	1000.58046	0.02912	1.4598E-05	-0.30634	-0.00015357	-0.27722	-0.00013897	501.29716173384475	36.122	0.20191	36.122	36.028	36.23	0					10	6	2	0	0	0	0.35021	1	14042	14042		45.972	1.4412	1	79183	+		17847	13474	11141	11193	18119	18119					0.08019493900224006
ILELFPKL	8	Unmodified	_ILELFPKL_					0	0	0		NXF3|p.S504Rfs*7|1|0.21|ENSG00000147206|chrX:103077686-103077687|-/AT|frameshift_variant;ENSG00000147206|ENST00000395065|NXF3	NXF3|p.S504Rfs*7|1|0.21|ENSG00000147206|chrX:103077686-103077687|-/AT|frameshift_variant	NXF3|p.S504Rfs*7|1|0.21|ENSG00000147206|chrX:103077686-103077687|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.8081970214844	2	486.810054	971.605554	-2.9126	-0.0014179	-1.5735	-0.000766	-4.4861	-0.0021839	486.8092859441374	21.383	0.15734	21.383	21.278	21.435	0					7	3	3	0	0	0	0.26534	1	6176	6176		94.006	0	1	280450			17848	4770	11142	11194	18120	18120					0.11861593493460987
ILEPQTVRI	9	Unmodified	_ILEPQTVRI_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.8246459960938	2	534.824224	1067.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.355	1	40.355	39.855	40.855	0								0	0	0	0.23445	1	14347	14347		45.972	0	1		+		17849	15935	11143	11195	18121	18121					0.10278291402755713
ILESHSFESA	10	Unmodified	_ILESHSFESA_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.2699584960938	2	560.269478	1118.5244	-0.056792	-3.1819E-05	0.7937	0.00044469	0.73691	0.00041287	560.2699508554587	30.538	0.24844	30.538	30.432	30.68	0					12	5	3	0	0	0	0.58896	1	11437	11437		35.618	3.6634	1	367980			17850	2050	11144	11196	18122	18122					-0.03011759007222281
ILEVFSCGR	9	Unmodified	_ILEVFSCGR_					0	0	0		ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7696533203125	2	512.268227	1022.5219	0.0056042	2.8709E-06	-0.32848	-0.00016827	-0.32287	-0.0001654	512.2681201366763	41.659	0.42972	41.659	41.555	41.984	0					47	21	3	0	0	0	0.30951	1	15885	15885		49.442	3.4896	1	304920			17851	10638	11145	11197	18123	18123					0.011541140541226014
ILFELCVGRK	10	Unmodified	_ILFELCVGRK_					0	0	0		nc|ENSG00000145348|Q8TEA7-3|TBCK;ENSG00000145348|ENST00000394708|TBCK	nc|ENSG00000145348|Q8TEA7-3|TBCK	nc|ENSG00000145348|Q8TEA7-3|TBCK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.3443603515625	2	589.341726	1176.6689	3.1847	0.0018769	-0.59354	-0.0003498	2.5911	0.0015271	589.3413871062734	51.845	0.5766	51.845	51.561	52.137	0					57	34	3	0	0	0	0.70877	1	20169	20169		20.947	0.95016	1	128740			17852	4667	11146	11198	18124	18124					0.08763210939059718
ILFLWSKKS	9	Unmodified	_ILFLWSKKS_					0	0	0			REV__tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	REV__tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.3380126953125	2	561.33951	1120.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.647	1	20.647	20.147	21.147	0								0	0	0	0.26578	1	5563	5563		42.396	1.8235	1		+		17853	21865	11147	11199	18125	18125					0.10896069787804663
ILFSLSQRK	9	Unmodified	_ILFSLSQRK_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3326416015625	2	546.332216	1090.64988	0.33592	0.00018353	0.25118	0.00013723	0.58711	0.00032076	546.3323985073721	33.046	0.27603	33.046	32.9	33.176	0					17	6	4	0	0	0	0.070005	1	12599	12599		71.877	2.2498	1	344730			17854	7741	11148	11200	18126	18126					0.10817997639651367
ILGGPFHV	8	Unmodified	_ILGGPFHV_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000165125|Q9H1D0-2|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.2410888671875	2	420.242338	838.470124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7138	1	6.7138	6.2138	7.2138	0								0	0	0	1.7419	1	1274	1274		5.0869	0.40514	1				17855	5765	11149	11201	18127	18127					0.04442738422517323
ILGGPVATVK	10	Unmodified	_ILGGPVATVK_					0	0	0			REV__ENSG00000178828|ENST00000375121|RNF186	REV__ENSG00000178828|ENST00000375121|RNF186	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.80157470703125	2	477.80276	953.590967	0.41325	0.00019745	-0.47046	-0.00022479	-0.057206	-2.7333E-05	477.8022137504159	37.671	0.29572	37.671	37.563	37.859	0					23	9	4	0	0	0	0.41335	1	14282	14282		54.776	4.7518	1	648160	+		17856	16748	11150	11202	18128	18128					0.11231521345325746
ILGLGDRR	8	Unmodified	_ILGLGDRR_					0	0	0		ATM|p.H2872R|1|0.36|ENSG00000149311|chr11:108347309-108347309|A/G|missense_variant	ATM|p.H2872R|1|0.36|ENSG00000149311|chr11:108347309-108347309|A/G|missense_variant	ATM|p.H2872R|1|0.36|ENSG00000149311|chr11:108347309-108347309|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.27435302734375	2	450.274701	898.534849	-0.52077	-0.00023449	0.11868	5.3437E-05	-0.4021	-0.00018105	450.27468650908753	52.951	0.35549	52.951	52.836	53.191	0					53	22	3	0	0	0	0.74117	1	18699	18699		28.254	2.8041	1	713370			17857	250	11151	11203	18129	18129					0.08152313228515595
ILGPAPAA	8	Unmodified	_ILGPAPAA_					0	0	0			REV__ENST00000596799.1_1_19:17622481-17623081:+|nuORF	REV__ENST00000596799.1_1_19:17622481-17623081:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	355.21484375	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.761	1	44.761	44.261	45.261	0								0	0	0	1.7419	1	15329	15329		16.705	0	1		+		17858	14573	11152	11204	18130	18130					0.051153606398429474
ILGPFVGEKGN	11	Unmodified	_ILGPFVGEKGN_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.5462341308594	3	377.544996	1129.61316	3.2554	0.0012291	0.5558	0.00020984	3.8112	0.0014389	377.54515556985757	35.906	0.51294	35.906	35.704	36.217	0					26	10	3	0	0	0	0.77007	1	13918	13918		13.508	0	1	710590	+		17859	12810	11153	11205	18131	18131					0.05353701023113899
ILGPPPPSF	9	Unmodified	_ILGPPPPSF_					0	0	0		ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENSG00000015479|ENST00000394805|MATR3	ENST00000511978.5_1_5:138651425-138655027:+|nuORF	ENST00000511978.5_1_5:138651425-138655027:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7626953125	2	462.763104	923.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.718	1	45.718	45.218	46.218	0								0	0	0	0.19085	1	18317	18317		52.299	21.796	1				17860	1080	11154	11206	18132	18132					0.046838743911848724
ILHGISETY	9	Unmodified	_ILHGISETY_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.H353Pfs*16|1|0.31|ENSG00000119285|chr1:236595572-236595573|-/G|frameshift_variant;HEATR1|p.M758Dfs*47|1|0.08|ENSG00000119285|chr1:236583167-236583168|-/G|frameshift_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7718505859375	2	516.771657	1031.52876	1.2687	0.0006556	-0.45281	-0.000234	0.81584	0.0004216	516.7712901781207	34.537	0.25032	34.537	34.413	34.663	0					12	6	3	0	0	0	0.35045	1	12885	12885		45.952	1.8352	1	340280			17861	3105	11155	11207	18133	18133					0.014257502063401262
ILIDHLRAP	9	Unmodified	_ILIDHLRAP_					0	0	0		ENST00000494174.5_1_20:32245637-32248074:-|nuORF;ENST00000485399.5_1_20:32245637-32248074:-|nuORF;ENST00000485976.5_1_20:32245637-32251387:-|nuORF;ENST00000606525.5_1_20:32245637-32250053:-|nuORF;ENST00000483813.5_1_20:32245637-32250053:-|nuORF;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3	ENST00000494174.5_1_20:32245637-32248074:-|nuORF	ENST00000494174.5_1_20:32245637-32248074:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.8817138671875	3	349.881831	1046.62366	1.4535	0.00050857	-2.4009	-0.00084004	-0.94738	-0.00033147	349.880962123645	29.327	0.52796	29.327	29.239	29.767	0					20	11	4	0	0	0	0.55379	1	10856	10856		26.693	4.1133	1	459070			17862	3452	11156	11208	18134	18134					0.10221728468172842
ILIFLYSILT	10	Unmodified	_ILIFLYSILT_					0	0	0			REV__ENSG00000197786|ENST00000357377|OR5B17	REV__ENSG00000197786|ENST00000357377|OR5B17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.2503662109375	3	399.249409	1194.7264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.138	1	10.138	9.6385	10.638	0								0	0	0	0.4201	1	1911	1911		4.6126	0.27374	1		+		17863	17356	11157	11209	18135	18135					0.13682376416272746
ILIKVAWKK	9	Unmodified	_ILIKVAWKK_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8716430664062	2	549.87352	1097.73249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.641	1	10.641	10.141	11.141	0								0	0	0	0.32356	1	2057	2057		30.504	0.18592	1				17864	5140	11158	11210	18136	18136					0.18752939438445537
ILINLADSY	9	Unmodified	_ILINLADSY_					0	0	0		tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2829284667969	2	511.281857	1020.54916	0.35241	0.00018018	1.1695	0.00059793	1.5219	0.00077811	511.2822186715452	29.691	0.19854	29.691	29.616	29.814	0					8	5	2	0	0	0	0.20551	1	10019	10019		60.972	7.6205	1	65006			17865	22736	11159	11211	18137	18137					0.039709208661292905
ILITGLTNK	9	Unmodified	_ILITGLTNK_					0	0	0		tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.80767822265625	2	486.808042	971.601532	-0.69744	-0.00033952	0.29792	0.00014503	-0.39953	-0.00019449	486.808157460278	21.5	0.26857	21.5	21.39	21.658	0					12	5	3	0	0	0	0.1115	1	7127	7127		76.774	5.4784	1	1552100			17866	22588	11160	11212	18138	18138					0.11459503999742537
ILKCRNVGPQ	10	Unmodified	_ILKCRNVGPQ_					0	0	0			REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant	REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5490417480469	3	376.549976	1126.6281	-0.39804	-0.00014988	-1.0057	-0.00037868	-1.4037	-0.00052857	376.5496757077873	17.209	0.89663	17.209	16.65	17.547	0					24	18	2	0	0	0	0.52275	1	5022	5022		42.864	0	1	250950	+		17867	12666	11161	11213	18139	18139					0.0698486961944127
ILKEHIQKSTG	11	Unmodified	_ILKEHIQKSTG_					0	0	0		CSTF2T|p.Q608H|1|0.16|ENSG00000177613|chr10:51697726-51697726|T/G|missense_variant	CSTF2T|p.Q608H|1|0.16|ENSG00000177613|chr10:51697726-51697726|T/G|missense_variant	CSTF2T|p.Q608H|1|0.16|ENSG00000177613|chr10:51697726-51697726|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.5784912109375	3	418.578588	1252.71394	-0.2872	-0.00012022	-0.0056736	-2.3749E-06	-0.29287	-0.00012259	418.578634903006	23.593	0.26296	23.593	23.484	23.747	0					13	5	3	0	0	0	0.46278	1	8034	8034		46.955	46.955	1	523860			17868	703	11162	11214	18140	18140					0.09768733005921604
ILKGEKDPQ	9	Unmodified	_ILKGEKDPQ_					0	0	0			REV__nc|ENSG00000025293|Q9BVI0-2|PHF20	REV__nc|ENSG00000025293|Q9BVI0-2|PHF20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1988525390625	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.266	1	28.266	27.766	28.766	0								0	0	0	0.35377	1	10220	10220		24.519	4.4887	1		+		17869	12952	11163	11215	18141	18141					0.05873725614696923
ILKLLICSH	9	Unmodified	_ILKLLICSH_					0	0	0		ENST00000371335.4_1_X:119571204-119571369:-|nuORF	ENST00000371335.4_1_X:119571204-119571369:-|nuORF	ENST00000371335.4_1_X:119571204-119571369:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.21685791015625	3	347.215934	1038.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.916	1	51.916	51.416	52.416	0								0	0	0	0.3119	1	20245	20245		32.812	3.6629	1				17870	8969	11164	11216	18142	18142					0.10820440881639115
ILKNAQSSGN	10	Unmodified	_ILKNAQSSGN_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	344.51971435546875	3	344.520851	1030.54072	-1.9574	-0.00067437	-0.47458	-0.0001635	-2.432	-0.00083787	344.5206274774758	18.65	0.15372	18.65	18.607	18.761	0					7	4	2	0	0	0	0.70877	1	4911	4911		26.063	9.5902	1	305090	+		17871	14769	11165	11217	18143	18143					0.02667366949526695
ILLPVIMER	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ILLPVIM(Oxidation (M))ER_		ILLPVIM(1)ER		ILLPVIM(71)ER	1	0	1		ENSG00000156398|ENST00000369893|SFXN2;SFXN2|p.P265Sfs*27|1|0.05|ENSG00000156398|chr10:102733574-102733575|-/T|frameshift_variant;SFXN2|p.E251D|1|0.19|ENSG00000156398|chr10:102732890-102732890|G/T|missense_variant	ENSG00000156398|ENST00000369893|SFXN2	ENSG00000156398|ENST00000369893|SFXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.3385620117188	2	571.33611	1140.65767	3.4025	0.001944	0.4963	0.00028355	3.8988	0.0022275	571.3364220747599	36.746	0.31784	36.746	36.596	36.914	0					11	6	3	0	0	0	0.13519	1	14301	14301		71.296	71.296	1	429010			17872	5169	11166	11218	18144	18144		209			0.09296388844904868
ILLSVNPAAL	10	Unmodified	_ILLSVNPAAL_					0	0	0		ENSG00000166926|ENST00000684409|MS4A6E	ENSG00000166926|ENST00000684409|MS4A6E	ENSG00000166926|ENST00000684409|MS4A6E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.3182067871094	2	505.815867	1009.61718	0.10548	5.3355E-05	0.62653	0.00031691	0.73201	0.00037026	506.3178611858115	35.44	0.20117	35.44	35.378	35.579	0					13	7	2	0	0	0	0.55603	1	12632	12632		39.253	1.4413	1	83527			17873	5949	11167	11219	18145	18145					0.11275790516799589
ILLTGRDEP	9	Unmodified	_ILLTGRDEP_					0	0	0		ENST00000318348.8_1_12:110288958-110289000:-|nuORF	ENST00000318348.8_1_12:110288958-110289000:-|nuORF	ENST00000318348.8_1_12:110288958-110289000:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2835388183594	2	507.284931	1012.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.724	1	31.724	31.224	32.224	0								0	0	0	0.29774	1	10957	10957		35.618	1.4457	1				17874	8592	11168	11220	18146	18146					0.04953439097664614
ILMIQANP	8	Unmodified	_ILMIQANP_					0	0	0			REV__ENST00000378588.4_1_X:37670194-37670278:+|nuORF	REV__ENST00000378588.4_1_X:37670194-37670278:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2542724609375	2	450.254588	898.494624	-0.10049	-4.5246E-05	-0.92672	-0.00041726	-1.0272	-0.00046251	450.2543234359177	26.416	0.30861	26.416	26.185	26.493	0					11	6	2	0	0	0	0.61433	1	9399	9399		46.766	2.2354	1	130830	+		17875	18746	11169	11221	18147	18147					0.04131630513722939
ILMWLLSY	8	Unmodified	_ILMWLLSY_					0	0	0			REV__ENST00000514430.5_1_4:103592514-103595082:-|nuORF	REV__ENST00000514430.5_1_4:103592514-103595082:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7882080078125	2	519.788264	1037.56198	0.30946	0.00016086	-0.48708	-0.00025318	-0.17762	-9.2324E-05	519.7879656398454	20.355	0.1663	20.355	20.294	20.46	0					7	3	3	0	0	0	0.65276	1	6463	6463		29.842	8.1558	1	233060	+		17876	19901	11170	11222	18148	18148					0.0446966072468058
ILNLMALLCAP	11	Unmodified	_ILNLMALLCAP_					0	0	0		nc|ENSG00000268235|B4DZS4-2|TCP11X1;ENSG00000268235|ENST00000622971|TCP11X1;ENSG00000215029|ENST00000642911|TCP11X2	nc|ENSG00000268235|B4DZS4-2|TCP11X1	nc|ENSG00000268235|B4DZS4-2|TCP11X1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2255859375	3	391.224101	1170.65047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.983	1	42.983	42.483	43.483	0								0	0	0	0.44926	1	16249	16249		26.063	4.3776	1				17877	7823	11171	11223	18149	18149					0.07197332972828008
ILNQGLIQELV	11	Unmodified	_ILNQGLIQELV_					0	0	0		ENST00000325110.10_1_5:43292976-43293042:-|nuORF	ENST00000325110.10_1_5:43292976-43293042:-|nuORF	ENST00000325110.10_1_5:43292976-43293042:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3694458007812	2	620.368995	1238.72344	0.17618	0.0001093	-0.013097	-8.125E-06	0.16308	0.00010117	620.3689560216098	26.109	3.0531	26.109	26	29.053	0					111	62	3	0	0	0	0.69983	1	10027	10027		24.519	8.8774	1	1251000			17878	8641	11172	11224	18150	18150					0.11362501291455374
ILNQIQIL	8	Unmodified	_ILNQIQIL_					0	0	0		ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.80255126953125	2	477.80276	953.590967	-0.32989	-0.00015762	0.10539	5.0354E-05	-0.2245	-0.00010727	477.8027369203305	37.426	0.19154	37.426	37.342	37.534	0					15	9	2	0	0	0	0.59411	1	13390	13390		50.025	2.3672	1	107400			17879	261	11173	11225	18151	18151					0.11231521345325746
ILNRLGPNFQ	10	Unmodified	_ILNRLGPNFQ_					0	0	0			REV__BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant	REV__BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.225830078125	3	391.224257	1170.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.477	1	42.477	41.977	42.977	0								0	0	0	0.4201	1	13998	13998		21.686	2.5822	1		+		17880	12274	11174	11226	18152	18152					0.07244212008549766
ILPEPVVY	8	Unmodified	_ILPEPVVY_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;ENST00000509719.1_1_4:17818900-17824753:+|nuORF;ENST00000514176.5_1_4:17816533-17825367:+|nuORF;NCAPG|p.I662Nfs*7|1|0.37|ENSG00000109805|chr4:17834391-17834392|-/A|frameshift_variant	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.267333984375	2	465.270761	928.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.481	1	38.481	37.981	38.981	0								0	0	0	1.7419	1	15098	15098		21.702	0.7554	1				17881	2592	11175	11227	18153	18153					0.059847411883765744
ILPEQGVSAL	10	Unmodified	_ILPEQGVSAL_					0	0	0		ENST00000536344.5_1_11:6479060-6495064:-|nuORF;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	ENST00000536344.5_1_11:6479060-6495064:-|nuORF	ENST00000536344.5_1_11:6479060-6495064:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7949829101562	2	513.795132	1025.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.717	1	43.717	43.217	44.217	0								0	0	0	0.3185	1	17504	17504		47.96	8.938	1				17882	2614	11176	11228	18154	18154					0.06394609757489889
ILPHNSSDL	9	Unmodified	_ILPHNSSDL_					0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2626953125	2	498.261456	994.50836	-0.21924	-0.00010924	1.3707	0.00068295	1.1514	0.00057372	498.2617605700303	32.009	0.24084	32.009	31.823	32.064	0					11	7	2	0	0	0	0.17854	1	11095	11095		64.207	3.9133	1	62831	+		17883	21987	11177	11229	18155	18155					0.010885795465128467
ILPIRAAFM	9	Unmodified	_ILPIRAAFM_					0	0	0		RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant;ENSG00000254656|ENST00000649591|RTL1	RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.5413818359375	3	344.540529	1030.59976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.235	1	19.235	18.735	19.735	0								0	0	0	0.36609	1	6045	6045		20.947	0.95016	1				17884	8010	11178	11230	18156	18156					0.08568171710135175
ILPKELQTW	9	Unmodified	_ILPKELQTW_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;nc|ENSG00000172466|P17028-2|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.3271484375	2	564.326599	1126.63865	3.4699	0.0019581	-1.7544	-0.00099004	1.7155	0.00096809	564.3254382694482	43.336	0.26365	43.336	43.257	43.521	0					15	10	2	0	0	0	0.27249	1	17350	17350		52.937	17.318	1	119590			17885	6365	11179	11231	18157	18157					0.08039175545513899
ILPQRCCL	8	Unmodified	_ILPQRCCL_					0	0	0			REV__ENSG00000131697|ENST00000378156|NPHP4	REV__ENSG00000131697|ENST00000378156|NPHP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2532043457031	2	473.254065	944.493578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.32	1	16.32	15.82	16.82	0								0	0	0	1.7419	1	4397	4397		23.037	2.1996	1		+		17886	14630	11180	11232	18158	18158					0.01911092873160669
ILQASLKLTL	10	Unmodified	_ILQASLKLTL_					0	0	0		ENST00000397195.9_1_17:2588550-2588628:+|nuORF	ENST00000397195.9_1_17:2588550-2588628:+|nuORF	ENST00000397195.9_1_17:2588550-2588628:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.240966796875	3	367.241025	1098.70125	-0.70274	-0.00025808	0.75289	0.00027649	0.050146	1.8416E-05	367.2413261440872	26.005	0.34425	26.005	25.832	26.177	0					20	9	3	0	0	0	0.74091	1	8111	8111		20.03	6.5225	1	323770			17887	9215	11181	11233	18159	18159					0.1558432161368728
ILQEVEDIYFP	11	Unmodified	_ILQEVEDIYFP_					0	0	0		tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	683.3488159179688	2	683.350468	1364.68638	-1.655	-0.001131	-0.57164	-0.00039063	-2.2267	-0.0015216	683.3497330658557	40.023	0.19462	40.023	39.946	40.141	0					8	6	2	0	0	0	0.68382	1	15776	15776		29.17	5.6474	1	39695			17888	22903	11182	11234	18160	18160					0.018627849550284736
ILQIMTLVV	9	Unmodified	_ILQIMTLVV_					0	0	0		ENST00000370513.9_2_1:89206944-89225970:+|nuORF	ENST00000370513.9_2_1:89206944-89225970:+|nuORF	ENST00000370513.9_2_1:89206944-89225970:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.324462890625	2	515.322471	1028.63039	3.2457	0.0016726	0.66243	0.00034136	3.9081	0.0020139	515.3228360505501	21.612	0.16527	21.612	21.505	21.67	0					9	3	4	0	0	0	0.24095	1	7074	7074		56.721	3.3696	1	893560			17889	8954	11183	11235	18161	18161					0.1172190530453463
ILQPPQSPK	9	Unmodified	_ILQPPQSPK_					0	0	0			REV__TOX|p.T345P|1|0.34|ENSG00000198846|chr8:58815697-58815697|T/G|missense_variant	REV__TOX|p.T345P|1|0.34|ENSG00000198846|chr8:58815697-58815697|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5342102050781	3	336.53432	1006.58113	-0.67431	-0.00022693	0.56005	0.00018848	-0.11426	-3.8454E-05	336.5344864086882	20.872	0.99027	20.872	20.243	21.233	0					45	31	2	0	0	0	0.55379	1	5663	5663		20.837	0	1	166900	+		17890	21660	11184	11236	18162	18162					0.07810333339944009
ILQSNIPPN	9	Unmodified	_ILQSNIPPN_					0	0	0			REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.77728271484375	2	498.279649	994.544745	0.82325	0.00041021	-0.62372	-0.00031079	0.19953	9.9422E-05	498.28134405407496	29.723	0.45956	29.723	29.599	30.059	0					28	9	4	0	0	0	0.46194	1	11117	11117		36.447	1.246	1	1269800	+		17891	22079	11185	11237	18163	18163					0.047254564432250845
ILRASTLLV	9	Unmodified	_ILRASTLLV_					0	0	0			REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.2182312011719	3	329.218332	984.633166	-0.6677	-0.00021982	0.43022	0.00014164	-0.23748	-7.8182E-05	329.2184958244357	33.541	0.60566	33.541	33.461	34.067	0					62	23	4	0	0	0	0.39123	1	11252	11252		58.782	3.2778	1	8420900	+		17892	18174	11186	11238	18164	18164					0.14023496753702602
ILRESPEPS	9	Unmodified	_ILRESPEPS_					0	0	0			REV__ENSG00000185610|ENST00000332700|DBX2	REV__ENSG00000185610|ENST00000332700|DBX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2765502929688	2	514.274564	1026.53457	3.1991	0.0016452	1.7663	0.00090834	4.9654	0.0025536	514.2751999580518	50.362	0.12245	50.362	50.277	50.4	0					9	7	2	0	0	0	0.51817	1	19872	19872		30.504	1.3541	1	67661	+		17893	17037	11187	11239	18165	18165					0.022368487179846852
ILRGPGRR	8	Unmodified	_ILRGPGRR_					0	0	0		MYOCD|p.Q636Sfs*59|1|0.39|ENSG00000141052|chr17:12753188-12753189|-/C|frameshift_variant	MYOCD|p.Q636Sfs*59|1|0.39|ENSG00000141052|chr17:12753188-12753189|-/C|frameshift_variant	MYOCD|p.Q636Sfs*59|1|0.39|ENSG00000141052|chr17:12753188-12753189|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7972106933594	2	462.796135	923.577717	2.5765	0.0011924	-0.25812	-0.00011945	2.3183	0.0010729	462.7959673219919	32.512	0.4193	32.512	32.287	32.706	0					21	8	4	0	0	0	0.59411	1	12271	12271		50.025	7.5501	1	802710			17894	11397	11188	11240	18166	18166					0.11287128076617137
ILRIRTSD	8	Unmodified	_ILRIRTSD_					0	0	0		ENSG00000254737|ENST00000641722|OR10G4	ENSG00000254737|ENST00000641722|OR10G4	ENSG00000254737|ENST00000641722|OR10G4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2928161621094	2	487.293091	972.571629	-0.37223	-0.00018139	0.24362	0.00011871	-0.12861	-6.2673E-05	487.2932041574392	51.482	0.23196	51.482	51.389	51.621	0					20	14	2	0	0	0	0.79719	1	15369	15369		18.324	18.324	1	61801			17895	8012	11189	11241	18167	18167					0.08424565054417599
ILRRKIDLR	9	Unmodified	_ILRRKIDLR_					0	0	0			REV__ENST00000457761.6_1_2:172821936-172844354:+|nuORF	REV__ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.9312438964844	3	394.931296	1181.77206	0.10944	4.322E-05	-0.17464	-6.897E-05	-0.0652	-2.5749E-05	394.9311980150682	19.783	0.36976	19.783	19.676	20.045	0					9	7	2	0	0	0	0.56424	1	6325	6325		25.574	1.0549	1	309040	+		17896	14523	11190	11242	18168	18168					0.18844459441879735
ILRRTESL	8	Unmodified	_ILRRTESL_					0	0	0		nc|ENSG00000162891|Q9NYY1-2|IL20;ENSG00000162891|ENST00000367098|IL20	nc|ENSG00000162891|Q9NYY1-2|IL20	nc|ENSG00000162891|Q9NYY1-2|IL20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.3008117675781	2	494.300916	986.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.781	1	54.781	54.281	55.281	0								0	0	0	1.7419	1	16038	16038		18.324	0.95945	1				17897	5507	11191	11243	18169	18169					0.09344851571461277
ILSNSLAIAI	10	Unmodified	_ILSNSLAIAI_					0	0	0		ENSG00000122420|ENST00000370757|PTGFR;PTGFR|p.V137Lfs*18|1|0.04|ENSG00000122420|chr1:78493151-78493152|-/CTTCT|frameshift_variant;nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR	ENSG00000122420|ENST00000370757|PTGFR	ENSG00000122420|ENST00000370757|PTGFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.81365966796875	2	507.813325	1013.6121	1.1284	0.00057303	-1.1077	-0.00056249	0.020757	1.0541E-05	507.81276596781834	40.379	0.27219	40.379	40.273	40.546	0					25	11	3	0	0	0	0.44469	1	15908	15908		51.335	5.3632	1	323450			17898	3264	11192	11244	18170	18170					0.10583486654161334
ILSQEECSST	10	Carbamidomethyl (C)	_ILSQEEC(Carbamidomethyl (C))SST_	ILSQEEC(1)SST		ILSQEEC(46)SST		0	1	0		ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.2578735351562	2	577.255711	1152.49687	1.5283	0.00088224	1.6857	0.00097311	3.2141	0.0018553	577.2567330033856	32.021	0.41669	32.021	31.779	32.195	0					18	10	2	0	0	0	0.49411	1	11710	11710		45.972	6.7194	1	131630			17899	6499	11193	11245	18171	18171	278				-0.07328030329767898
ILSSVSDVP	9	Unmodified	_ILSSVSDVP_					0	0	0		nc|ENSG00000185499|P15941-10|MUC1	nc|ENSG00000185499|P15941-10|MUC1	nc|ENSG00000185499|P15941-10|MUC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7527770996094	2	458.752933	915.491313	0.17252	7.9146E-05	-0.75541	-0.00034655	-0.58289	-0.0002674	458.7525690327767	30.679	0.28511	30.679	30.537	30.822	0					15	6	4	0	0	0	0.50461	1	11074	11074		31.955	1.4512	1	501610			17900	11684	11194	11246	18172	18172					0.030186589407207975
ILTELLRK	8	Unmodified	_ILTELLRK_					0	0	0			REV__ENST00000539332.2_1_11:61070596-61071371:-|nuORF	REV__ENST00000539332.2_1_11:61070596-61071371:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.21826171875	3	329.218332	984.633166	-0.6677	-0.00021982	0.43022	0.00014164	-0.23748	-7.8182E-05	329.2184958244357	33.541	0.60566	33.541	33.461	34.067	0					62	23	4	0	0	0	0.79176	1	11386	11386		24.203	1.1603	1	8420900	+		17901	20123	11195	11247	18173	18173					0.1402349675371397
ILTEPGPV	8	Unmodified	_ILTEPGPV_					0	0	0			REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant	REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.2383728027344	2	413.239461	824.46437	-1.372	-0.00056694	-1.5979	-0.00066031	-2.9698	-0.0012273	413.2388375924835	44.751	0.33652	44.751	44.514	44.851	0					31	21	2	0	0	0	0.79293	1	14474	14474		15.636	0.97212	1	81029	+		17902	13295	11196	11248	18174	18174					0.04511595120197853
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF	nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910-3|EZH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.3310546875	2	567.32987	1132.64519	1.862	0.0010564	-0.76081	-0.00043163	1.1012	0.00062476	567.3293328569408	52.236	0.88717	52.236	51.872	52.759	0					120	54	3	0	0	0	0.75295	1	19375	19375		22.58	22.58	1	270020			17903	2441	11197	11249	18175	18175					0.08417068706262398
ILVEEMAPLK	10	Unmodified	_ILVEEMAPLK_					0	0	0		nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;ZSCAN26|p.E207Tfs*44|1|0.08|ENSG00000197062|chr6:28276276-28276277|-/CACCAATTACT|frameshift_variant	nc|ENSG00000197062|Q16670|ZSCAN26;ZSCAN26|p.E207Tfs*44|1|0.08|ENSG00000197062|chr6:28276276-28276277|-/CACCAATTACT|frameshift_variant	nc|ENSG00000197062|Q16670|ZSCAN26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.8296508789062	2	571.828117	1141.64168	1.0958	0.0006266	0.41729	0.00023862	1.5131	0.00086521	571.8285234652759	27.012	0.19321	27.012	26.932	27.125	0					14	6	3	0	0	0	0.15878	1	8268	8268		53.351	0	1	310700			17904	7421;23178	11198	11250	18176	18176					0.0765268260799985
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7749938964844	2	436.776211	871.537869	-1.4338	-0.00062627	-0.99922	-0.00043644	-2.4331	-0.0010627	436.77565706764113	51.668	0.27947	51.668	51.586	51.865	0					31	17	3	0	0	0	0.66372	1	16756	16756		38.806	0	1	144830	+		17905	16588	11199	11251	18177	18177					0.0969614356265538
ILVTIQFEDV	10	Unmodified	_ILVTIQFEDV_					0	0	0		ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.888916015625	3	392.88854	1175.64379	0.42671	0.00016765	0.73563	0.00028902	1.1623	0.00045667	392.88881224851923	34.9	0.64233	34.9	34.686	35.328	0					36	18	3	0	0	0	0.69166	1	13469	13469		16.007	0	1	176790			17906	8865	11200	11252	18178	18178					0.06299434617471888
ILWEHTDE	8	Unmodified	_ILWEHTDE_					0	0	0		ENST00000396776.6_1_5:57787363-57789485:+|nuORF	ENST00000396776.6_1_5:57787363-57789485:+|nuORF	ENST00000396776.6_1_5:57787363-57789485:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7474975585938	2	521.745639	1041.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.563	1	27.563	27.063	28.063	0								0	0	0	1.7419	1	8795	8795		38.806	4.6336	1				17907	9208	11201	11253	18179	18179					-0.04235413207447891
ILWNVSSL	8	Unmodified	_ILWNVSSL_					0	0	0		APC|p.R640W|1|0.37|ENSG00000134982|chr5:112835125-112835125|C/T|missense_variant	APC|p.R640W|1|0.37|ENSG00000134982|chr5:112835125-112835125|C/T|missense_variant	APC|p.R640W|1|0.37|ENSG00000134982|chr5:112835125-112835125|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2678527832031	2	466.26601	930.517468	-0.13498	-6.2936E-05	4.2936	0.002002	4.1587	0.001939	466.2680192684551	39.391	0.082481	39.391	39.336	39.418	0					4	2	2	0	0	0	0.66372	1	15495	15495		38.806	1.647	1	36593			17908	183	11202	11254	18180	18180					0.049429729028588554
ILYDHAHVK	9	Unmodified	_ILYDHAHVK_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.3011474609375	2	548.300916	1094.58728	1.7818	0.00097695	-1.2527	-0.00068688	0.52904	0.00029008	548.3001937148052	20.322	0.36634	20.322	20.212	20.579	0					16	7	4	0	0	0	0.028876	1	6579	6579		110.12	35.865	1	2047300			17909	2934	11203	11255	18181	18181					0.04376851571464613
ILYDHAHVK	9	Unmodified	_ILYDHAHVK_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.3015747070312	2	548.300916	1094.58728	-1.5075	-0.00082657	2.4722	0.0013555	0.96466	0.00052892	548.3023755441632	20.173	0.10327	20.173	20.117	20.22	0					6	2	3	0	0	0	0.028876	1	5629	5629		110.12	30.669	1	161090			17910	2934	11203	11255	18182	18182					0.04376851571464613
ILYDHAHVK	9	Unmodified	_ILYDHAHVK_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.30126953125	2	548.300916	1094.58728	1.8665	0.0010234	-1.0129	-0.00055536	0.8536	0.00046803	548.3002980946405	20.336	0.16799	20.336	20.226	20.394	0					6	3	2	0	0	0	0.0406	1	6457	6457		98.629	24.374	1	1479500			17911	2934	11203	11255	18183	18183					0.04376851571464613
ILYHYPEL	8	Unmodified	_ILYHYPEL_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2788696289062	2	524.279118	1046.54368	1.6257	0.00085231	0.32626	0.00017105	1.9519	0.0010234	524.2788878214699	41.911	0.18779	41.911	41.848	42.036	0					8	5	2	0	0	0	0.55361	1	16721	16721		54.765	3.2369	1	87510			17912	3322	11204	11256	18184	18184					0.022272420743320254
ILYLVTPP	8	Unmodified	_ILYLVTPP_					0	0	0		nc|ENSG00000171885|P55087-2|AQP4;ENSG00000171885|ENST00000383168|AQP4	nc|ENSG00000171885|P55087-2|AQP4	nc|ENSG00000171885|P55087-2|AQP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2787170410156	2	458.281129	914.547705	0.17932	8.218E-05	-1.0695	-0.00049012	-0.89014	-0.00040794	458.279245514939	30.441	0.29753	30.441	30.256	30.553	0					21	7	4	0	0	0	0.61433	1	10923	10923		46.766	5.9883	1	124970			17913	6332	11205	11257	18185	18185					0.08701331568033766
ILYRHPPE	8	Unmodified	_ILYRHPPE_					0	0	0			REV__ENSG00000157330|ENST00000614859|CFAP107	REV__ENSG00000157330|ENST00000614859|CFAP107	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.786376953125	2	512.782359	1023.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.914	1	17.914	17.414	18.414	0								0	0	0	1.7419	1	4587	4587		68.485	0	1		+		17914	15654	11206	11258	18186	18186					0.039331800256945826
IMAHCRLE	8	Carbamidomethyl (C)	_IMAHC(Carbamidomethyl (C))RLE_	IMAHC(1)RLE		IMAHC(58)RLE		0	1	0		AluJo_dup65935|chr17:47951181-47951484:-|3.1232314964255035|0.4639684686261284|2.75|483.0|22|3|anti-sense	AluJo_dup65935|chr17:47951181-47951484:-|3.1232314964255035|0.4639684686261284|2.75|483.0|22|3|anti-sense	AluJo_dup65935|chr17:47951181-47951484:-|3.1232314964255035|0.4639684686261284|2.75|483.0|22|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2542724609375	2	515.252054	1028.48956	0.027977	1.4415E-05	3.9253	0.0020225	3.9533	0.0020369	515.2542651097574	39.329	0.15603	39.329	39.245	39.401	0					7	5	2	0	0	0	0.52345	1	14966	14966		57.811	10.154	1	66510			17915	125	11207	11259	18187	18187	6				-0.023549966205337114
IMAKDDRLD	9	Unmodified	_IMAKDDRLD_					0	0	0			REV__ENST00000578535.1_1_18:22265891-22265996:-|nuORF	REV__ENST00000578535.1_1_18:22265891-22265996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7747192382812	2	538.773874	1075.53319	-0.1897	-0.00010221	0.40932	0.00022053	0.21962	0.00011832	538.7743199482354	34.078	0.24829	34.078	34.003	34.251	0					22	10	3	0	0	0	0.25716	1	11463	11463		54.776	6.8168	1	142520	+		17916	20435	11208	11260	18188	18188					-0.0015510864241150557
IMAVILGIFGT	11	Unmodified	_IMAVILGIFGT_					0	0	0		ENST00000533581.1_1_1:31658018-31661124:-|nuORF;ENSG00000084628|ENST00000373736|NKAIN1	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.83251953125	2	567.833203	1133.65185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.997	1	50.997	50.497	51.497	0								0	0	0	0.45674	1	18285	18285		16.473	0.83134	1				17917	10462	11209	11261	18189	18189					0.09037290333253623
IMDQLRNL	8	Unmodified	_IMDQLRNL_					0	0	0		nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30;ENST00000519391.1_1_8:118542904-118552214:+|nuORF	nc|ENSG00000164758|Q96HR3-2|MED30	nc|ENSG00000164758|Q96HR3-2|MED30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.773193359375	2	501.773677	1001.5328	0.14252	7.1512E-05	-1.1145	-0.00055924	-0.97202	-0.00048773	501.77327404445685	19.288	0.53574	19.288	18.884	19.42	0					34	12	4	0	0	0	0.63077	1	5096	5096		44.117	1.6423	1	442880			17918	5729	11210	11262	18190	18190					0.032095164284100974
IMFSVRSYDLD	11	Unmodified	_IMFSVRSYDLD_					0	0	0			REV__nc|ENSG00000119508|Q92570-2|NR4A3	REV__nc|ENSG00000119508|Q92570-2|NR4A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.218994140625	3	449.220072	1344.63839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.189	1	16.189	15.689	16.689	0								0	0	0	0.44926	1	3785	3785		26.063	4.283	1		+		17919	20995	11211	11263	18191	18191					-0.020146122366440977
IMGLVCFSFL	10	Unmodified	_IMGLVCFSFL_					0	0	0			REV__tr|U7T5K3|U7T5K3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00087PE=4SV=1	REV__tr|U7T5K3|U7T5K3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00087PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.2960815429688	2	565.292856	1128.57116	0.31688	0.00017913	3.2899	0.0018598	3.6068	0.0020389	565.2941840020122	26.884	0.17664	26.884	26.792	26.969	0					11	4	3	0	0	0	0.47621	1	9335	9335		47.916	1.9434	1	387260	+		17920	22183	11212	11264	18192	18192					0.012016860187031853
IMGPSLNNQ	9	Unmodified	_IMGPSLNNQ_					0	0	0			REV__nc|ENSG00000013619|Q13495-3|MAMLD1	REV__nc|ENSG00000013619|Q13495-3|MAMLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.24090576171875	2	487.242209	972.469866	-0.054324	-2.6469E-05	-2.7526	-0.0013412	-2.8069	-0.0013676	487.24079586827855	29.462	0.25388	29.462	29.421	29.675	0					11	8	2	0	0	0	0.42902	1	9314	9314		39.253	2.0937	1	94484	+		17921	20924	11213	11265	18193	18193					-0.017470493596420056
IMGSHSAK	8	Unmodified	_IMGSHSAK_					0	0	0			REV__ENSG00000101384|ENST00000254958|JAG1	REV__ENSG00000101384|ENST00000254958|JAG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.7129211425781	2	415.713088	829.411622	2.7878	0.0011589	-3.5967	-0.0014952	-0.80893	-0.00033628	415.7117673343588	20.52	0.41591	20.52	20.36	20.776	0					19	8	5	0	0	0	0.41952	1	6541	6541		68.485	2.5872	1	5710600	+		17922	13603	11214	11266	18194	18194					-0.009906862142656792
IMHLVYGK	8	Oxidation (M)	_IM(Oxidation (M))HLVYGK_		IM(1)HLVYGK		IM(55)HLVYGK	0	0	1			REV__ENST00000477588.5_1_1:111661309-111663177:-|nuORF	REV__ENST00000477588.5_1_1:111661309-111663177:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7696533203125	2	488.767863	975.521173	2.603	0.0012722	0.89961	0.0004397	3.5026	0.0017119	488.76826514599406	14.483	0.77245	14.483	14.222	14.995	0					24	15	2	0	0	0	0.55361	1	3623	3623		54.765	6.8491	1	3196100	+		17923	15620	11215	11267	18195	18195		603			0.032433194050668135
IMISRQSNL	9	Unmodified	_IMISRQSNL_					0	0	0		tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2925415039062	2	531.292233	1060.56991	0.72431	0.00038482	-0.057482	-3.054E-05	0.66683	0.00035428	531.2923865218048	19.204	0.1649	19.204	19.096	19.26	0					7	3	3	0	0	0	0.25716	1	5905	5905		54.776	0	1	805690			17924	22797	11216	11268	18196	18196					0.042051879741620724
IMLFPQKL	8	Unmodified	_IMLFPQKL_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2973327636719	2	495.296256	988.57796	0.92996	0.00046061	1.1659	0.00057747	2.0959	0.0010381	495.29699497042526	40.009	0.19169	40.009	39.912	40.104	0					7	4	2	0	0	0	0.57802	1	15869	15869		52.299	2.2746	1	179110			17925	4990	11217	11269	18197	18197					0.08321366961581589
IMLVIFTEF	9	Oxidation (M)	_IM(Oxidation (M))LVIFTEF_		IM(1)LVIFTEF		IM(41)LVIFTEF	0	0	1			REV__SCN3A|p.F1214L|1|0.33|ENSG00000153253|chr2:165113843-165113843|G/T|missense_variant	REV__SCN3A|p.F1214L|1|0.33|ENSG00000153253|chr2:165113843-165113843|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8065795898438	2	564.804111	1127.59367	3.4707	0.0019603	1.0473	0.0005915	4.5179	0.0025517	564.8048021703187	39.552	0.27927	39.552	39.455	39.734	0					16	6	3	0	0	0	0.41354	1	15630	15630		40.573	40.573	1	513790	+		17926	21494	11218	11270	18198	18198		777			0.03497608687985121
IMPACLAV	8	Oxidation (M)	_IM(Oxidation (M))PACLAV_		IM(1)PACLAV		IM(44)PACLAV	0	0	1		ENST00000482953.5_1_21:42762201-42762450:+|nuORF	ENST00000482953.5_1_21:42762201-42762450:+|nuORF	ENST00000482953.5_1_21:42762201-42762450:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.1944885253906	2	417.216617	832.418682	1.0549	0.00044012	-0.70781	-0.00029531	0.34709	0.00014481	417.21623850655664	25.877	0.22491	25.877	25.744	25.969	0					5	3	2	0	0	0	0.63381	1	8852	8852		43.626	6.5976	1	85675			17927	9973	11219	11271	18199	18199		402			-0.004230896580452281
IMQMDLGE	8	Unmodified	_IMQMDLGE_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7137145996094	2	468.711896	935.409239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.089	1	38.089	37.589	38.589	0								0	0	0	1.7419	1	14464	14464		45.952	3.4775	1		+		17928	15011	11220	11272	18200	18200					-0.06104902734239204
IMSDGKIV	8	Unmodified	_IMSDGKIV_					0	0	0		tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.73876953125	2	431.738771	861.462989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.462	1	27.462	26.962	27.962	0								0	0	0	1.7419	1	9595	9595		47.916	5.4411	1				17929	22865	11221	11273	18201	18201					0.026716377597722385
IMSSEVTIAK	10	Unmodified	_IMSSEVTIAK_					0	0	0			REV__PSMF1|p.A161Cfs*26|1|0.07|ENSG00000125818|chr20:1135228-1135229|-/C|frameshift_variant	REV__PSMF1|p.A161Cfs*26|1|0.07|ENSG00000125818|chr20:1135228-1135229|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7941284179688	2	539.794275	1077.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.443	1	32.443	31.943	32.943	0								0	0	0	0.37602	1	10490	10490		37.812	7.4938	1		+		17930	14442	11222	11274	18202	18202					0.03831232677225671
IMTGSYNNF	9	Unmodified	_IMTGSYNNF_					0	0	0		ENST00000490777.2_10:133754324-133769464:+|nuORF;PPP2R2B|p.G397Afs*31|1|0.1|ENSG00000156475|chr5:146590089-146590089|C/-|frameshift_variant;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B	ENST00000490777.2_10:133754324-133769464:+|nuORF	ENST00000490777.2_10:133754324-133769464:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7344970703125	2	523.734217	1045.45388	1.7477	0.00091533	-1.6958	-0.00088814	0.051905	2.7184E-05	523.733885630628	40.321	0.095325	40.321	40.269	40.364	0					6	4	2	0	0	0	0.19605	1	15368	15368		62.107	10.915	1	55573			17931	5174	11223	11275	18203	18203					-0.06702755596552379
IMTGSYNNF	9	Unmodified	_IMTGSYNNF_					0	0	0		ENST00000490777.2_10:133754324-133769464:+|nuORF;PPP2R2B|p.G397Afs*31|1|0.1|ENSG00000156475|chr5:146590089-146590089|C/-|frameshift_variant;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B	ENST00000490777.2_10:133754324-133769464:+|nuORF	ENST00000490777.2_10:133754324-133769464:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7342529296875	2	523.734217	1045.45388	0.48876	0.00025598	-0.020059	-1.0506E-05	0.4687	0.00024547	523.7341705648251	40.251	0.0951	40.251	40.188	40.283	0					4	2	2	0	0	0	0.42902	1	15970	15970		39.253	2.0937	1	53988			17932	5174	11223	11275	18204	18204					-0.06702755596552379
IMTGSYNNF	9	Unmodified	_IMTGSYNNF_					0	0	0		ENST00000490777.2_10:133754324-133769464:+|nuORF;PPP2R2B|p.G397Afs*31|1|0.1|ENSG00000156475|chr5:146590089-146590089|C/-|frameshift_variant;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B	ENST00000490777.2_10:133754324-133769464:+|nuORF	ENST00000490777.2_10:133754324-133769464:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7340087890625	2	523.734217	1045.45388	1.6255	0.00085132	-1.0117	-0.00052985	0.6138	0.00032147	523.7335207371682	40.259	0.13202	40.259	40.176	40.308	0					6	3	2	0	0	0	0.07136	1	15967	15967		87.696	26.724	1	88106			17933	5174	11223	11275	18205	18205					-0.06702755596552379
IMTMLHPK	8	Unmodified	_IMTMLHPK_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.763916015625	2	485.764266	969.513979	-0.022227	-1.0797E-05	-0.5304	-0.00025765	-0.55263	-0.00026845	485.7640225413539	37.396	0.19073	37.396	37.269	37.459	0					16	10	2	0	0	0	0.66372	1	12232	12232		38.806	1.647	1	82070			17934	9510	11224	11276	18206	18206					0.02800263532981262
IMTMLYKI	8	Oxidation (M)	_IM(Oxidation (M))TMLYKI_		IM(0.919)TM(0.081)LYKI		IM(11)TM(-11)LYKI	0	0	1			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.77978515625	2	514.779582	1027.54461	0.12804	6.5913E-05	1.2432	0.00063999	1.3713	0.00070591	514.7799545668553	27.362	0.23194	27.362	27.267	27.499	0					17	8	3	0	0	0	0.64096	1	8427	8427		42.474	11.971	2	130790	+		17935	15608	11225	11277	18207	18207		600			0.03193997127368675
IMVGAQAKL	9	Oxidation (M)	_IM(Oxidation (M))VGAQAKL_		IM(1)VGAQAKL		IM(66)VGAQAKL	0	0	1			REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7709045410156	2	473.773145	945.531738	-2.5471	-0.0012067	-1.0314	-0.00048866	-3.5785	-0.0016954	473.7725279972398	25.638	0.18055	25.638	25.597	25.778	0					6	4	2	0	0	0	0.16524	1	8188	8188		65.803	7.0212	1	67247	+		17936	21724	11226	11278	18208	18208		789			0.056793020595023336
IMVSQNNVL	9	Unmodified	_IMVSQNNVL_					0	0	0			REV__ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	REV__ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.27227783203125	2	509.273509	1016.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.75	1	37.75	37.25	38.25	0								0	0	0	0.23445	1	14333	14333		45.972	1.8554	1		+		17937	12153	11227	11279	18209	18209					0.024860967085373886
IMVSQNNVL	9	Unmodified	_IMVSQNNVL_					0	0	0			REV__ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	REV__ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.27362060546875	2	509.273509	1016.53247	-1.8588	-0.00094664	1.2942	0.00065908	-0.56464	-0.00028756	509.2743685880322	37.489	0.18288	37.489	37.402	37.584	0					12	9	2	0	0	0	0.16002	1	13418	13418		66.429	24.033	1	66038	+		17938	12153	11227	11279	18210	18210					0.024860967085373886
IMWIQHVP	8	Unmodified	_IMWIQHVP_					0	0	0			REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2776489257812	2	512.275855	1022.53716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.926	1	34.926	34.426	35.426	0								0	0	0	1.7419	1	13498	13498		37.028	3.5129	1		+		17939	18351	11228	11280	18211	18211					0.02679025641964472
INADIRGI	8	Unmodified	_INADIRGI_					0	0	0		DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1;DZIP1|p.E777Kfs*6|2|0.22|ENSG00000134874|chr13:95586027-95586027|T/-|frameshift_variant	DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant	DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2533264160156	2	436.253434	870.492316	-0.41455	-0.00018085	0.20738	9.047E-05	-0.20717	-9.0377E-05	436.25348028193025	32.086	0.17633	32.086	32.005	32.181	0					6	4	2	0	0	0	0.66095	1	11759	11759		39.253	5.0803	1	75115			17940	864	11229	11281	18212	18212					0.051889181002820806
INARPEGVV	9	Unmodified	_INARPEGVV_					0	0	0			REV__ENSG00000179580|ENST00000569714|RNF151	REV__ENSG00000179580|ENST00000569714|RNF151	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.771728515625	2	477.771991	953.529429	0.012746	6.0897E-06	-0.61853	-0.00029552	-0.60578	-0.00028943	477.77178216733057	26.84	0.30061	26.84	26.687	26.987	0					14	10	2	0	0	0	0.4966	1	8204	8204		32.812	2.3088	1	64240	+		17941	16780	11230	11282	18213	18213					0.05080589646047429
INAVSIDMLL	10	Oxidation (M)	_INAVSIDM(Oxidation (M))LL_		INAVSIDM(1)LL		INAVSIDM(46)LL	0	0	1		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.8698425292969	3	368.870492	1103.58965	-1.0083	-0.00037192	1.8133	0.00066889	0.80508	0.00029697	368.87106313958594	21.684	0.2784	21.684	21.546	21.825	0					12	8	2	0	0	0	0.49411	1	6272	6272		45.972	9.5255	1	104130			17942	6504	11231	11283	18214	18214		269			0.04199519194253298
INDETVQTI	9	Unmodified	_INDETVQTI_					0	0	0			REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7642211914062	2	516.764029	1031.5135	-1.486	-0.00076791	2.5151	0.0012997	1.0291	0.0005318	516.7649188345355	23.713	0.16668	23.713	23.627	23.794	0					9	4	3	0	0	0	0.30841	1	7307	7307		49.536	0	1	99442	+		17943	15156	11232	11284	18215	18215					-0.0009916138149037579
INDNLVKLF	9	Unmodified	_INDNLVKLF_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.310546875	2	538.310949	1074.60735	0.29866	0.00016077	-0.00095302	-5.1302E-07	0.29771	0.00016026	538.3108743836309	33.233	0.56857	33.233	33.036	33.605	0					33	13	3	0	0	0	0.33044	1	12645	12645		47.657	1.6851	1	144560	+		17944	15683	11233	11285	18216	18216					0.0730260251141317
INDVRCCSS	9	Unmodified	_INDVRCCSS_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1	REV__nc|ENSG00000141458|O15118-2|NPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.71527099609375	2	498.715501	995.41645	-1.0875	-0.00054236	1.0066	0.00050198	-0.080967	-4.0379E-05	498.71592911608343	17.735	0.11304	17.735	17.657	17.77	0					6	3	2	0	0	0	0.53083	1	4497	4497		29.15	7.1897	1	65848	+		17945	15118	11234	11286	18217	18217					-0.08144170133812167
INEIAFPHK	9	Unmodified	_INEIAFPHK_					0	0	0			REV__ENSG00000171956|ENST00000396057|FOXB1	REV__ENSG00000171956|ENST00000396057|FOXB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.8660888671875	3	356.86607	1067.57638	0.48725	0.00017388	-0.61415	-0.00021917	-0.1269	-4.5285E-05	356.8658558970382	25.373	0.22076	25.373	25.275	25.496	0					13	5	3	0	0	0	0.57706	1	8671	8671		31.53	1.2121	1	367390	+		17946	16442	11235	11287	18218	18218					0.045294491971844764
INGAHWNTLGA	11	Unmodified	_INGAHWNTLGA_					0	0	0			REV__ENSG00000115593|ENST00000419482|SMYD1	REV__ENSG00000115593|ENST00000419482|SMYD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.19659423828125	3	385.196478	1152.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.786	1	13.786	13.286	14.286	0								0	0	0	0.24969	1	3283	3283		58.246	3.5239	1		+		17947	14118	11236	11288	18219	18219					-0.0025752443928013236
INGGRGYKI	9	Unmodified	_INGGRGYKI_					0	0	0			REV__TLR4|p.E671G|1|0.47|ENSG00000136869|chr9:117714140-117714140|A/G|missense_variant	REV__TLR4|p.E671G|1|0.47|ENSG00000136869|chr9:117714140-117714140|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2792663574219	2	489.279983	976.545414	-0.516	-0.00025247	-0.56882	-0.00027831	-1.0848	-0.00053078	489.2797666508292	27.007	0.16818	27.007	26.902	27.07	0					7	3	3	0	0	0	0.2873	1	9628	9628		51.335	0	1	189590	+		17948	21644	11237	11289	18220	18220					0.05620295882943083
INISSIIFLN	10	Unmodified	_INISSIIFLN_					0	0	0			REV__ENST00000273963.9_1_4:88081861-88081957:-|nuORF	REV__ENST00000273963.9_1_4:88081861-88081957:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.3312377929688	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.401	1	51.401	50.901	51.901	0								0	0	0	0.4201	1	16705	16705		20.837	0	1		+		17949	18109	11238	11290	18221	18221					0.0881915819995811
INKISYFTI	9	Unmodified	_INKISYFTI_					0	0	0			REV__tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	REV__tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.87677001953125	3	366.877975	1097.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.18	1	21.18	20.68	21.68	0								0	0	0	0.31838	1	6983	6983		31.53	4.4825	1		+		17950	21941	11239	11291	18222	18222					0.06719486654174034
INKYQATGPL	10	Unmodified	_INKYQATGPL_					0	0	0			REV__FBN2|p.K2435N|1|0.28|ENSG00000138829|chr5:128278675-128278675|C/A|missense_variant	REV__FBN2|p.K2435N|1|0.28|ENSG00000138829|chr5:128278675-128278675|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8742980957031	3	368.873113	1103.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.723	1	28.723	28.223	29.223	0								0	0	0	0.22047	1	10440	10440		61.691	3.4614	1		+		17951	20667	11240	11292	18223	18223					0.04985414506040797
INLASVTGPVL	11	Unmodified	_INLASVTGPVL_					0	0	0			REV__ENST00000531958.5_1_11:67184647-67184824:+|nuORF	REV__ENST00000531958.5_1_11:67184647-67184824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.3241577148438	2	542.324057	1082.63356	0.22357	0.00012125	0.71495	0.00038774	0.93852	0.00050898	542.3244221151389	34.003	0.35271	34.003	33.835	34.188	0					40	14	4	0	0	0	0.65907	1	11407	11407		31.53	2.3598	1	908880	+		17952	20068	11241	11293	18224	18224					0.0955487168291711
INLDKDNWM	9	Unmodified	_INLDKDNWM_					0	0	0			REV__tr|U7SNT5|U7SNT5_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01943PE=3SV=1	REV__tr|U7SNT5|U7SNT5_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01943PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.776611328125	2	574.773874	1147.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.481	1	44.481	43.981	44.981	0								0	0	0	0.3304	1	17310	17310		29.15	2.1022	1		+		17953	21817	11242	11294	18225	18225					-0.03467108642416861
INLFVSAILM	10	Unmodified	_INLFVSAILM_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8276977539062	2	560.825378	1119.6362	3.47	0.0019461	0.60641	0.00034009	4.0764	0.0022862	560.825661605698	31.345	0.66042	31.345	31.241	31.902	0					33	13	5	0	0	0	0.2538	1	11717	11717		60.972	13.315	1	5515900			17954	8118	11243	11295	18226	18226					0.08117003816209944
INLHELIST	9	Unmodified	_INLHELIST_					0	0	0		ENST00000378230.7_1_1:3730493-3730565:-|nuORF	ENST00000378230.7_1_1:3730493-3730565:-|nuORF	ENST00000378230.7_1_1:3730493-3730565:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.1986999511719	3	347.197596	1038.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.948	1	39.948	39.448	40.448	0								0	0	0	0.36266	1	15826	15826		16.717	5.0815	1				17955	9065	11244	11296	18227	18227					0.053217256147036096
INLVKQLDP	9	Unmodified	_INLVKQLDP_					0	0	0			REV__ENSG00000126947|ENST00000372829|ARMCX1	REV__ENSG00000126947|ENST00000372829|ARMCX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3109130859375	2	520.310949	1038.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.541	1	37.541	37.041	38.041	0								0	0	0	0.24724	1	14239	14239		44.117	4.864	1		+		17956	14478	11245	11297	18228	18228					0.08958602511415847
INMLNYNP	8	Unmodified	_INMLNYNP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.73846435546875	2	489.739302	977.464052	-0.03825	-1.8732E-05	-2.1695	-0.0010625	-2.2077	-0.0010812	489.73832903016296	16.501	0.10087	16.501	16.437	16.538	0					5	3	2	0	0	0	0.7887	1	3774	3774		12.959	2.6939	1	116560	+		17957	14938	11246	11298	18229	18229					-0.02558147871309302
INNFSKSVL	9	Unmodified	_INNFSKSVL_					0	0	0			REV__ENST00000604660.1_1_4:185428414-185430663:-|nuORF	REV__ENST00000604660.1_1_4:185428414-185430663:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.28680419921875	2	511.287474	1020.5604	-0.38005	-0.00019431	-0.21896	-0.00011195	-0.59901	-0.00030627	511.2874813392562	33.714	0.26015	33.714	33.629	33.889	0					21	10	3	0	0	0	0.24095	1	11319	11319		56.721	1.9447	1	237650	+		17958	20611	11247	11299	18230	18230					0.050937429602981865
INNQYPYIKQ	10	Unmodified	_INNQYPYIKQ_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	640.8370971679688	2	640.83532	1279.65609	2.9686	0.0019024	-0.44688	-0.00028638	2.5218	0.001616	640.8352558645654	24.504	0.21459	24.504	24.397	24.611	0					11	4	4	0	0	0	0.30737	1	8480	8480		66.429	2.8954	1	884790	+		17959	17188	11248	11300	18231	18231					0.02744471080495714
INNTCFYTKNG	11	Unmodified	_INNTCFYTKNG_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.5334777832031	3	425.53265	1273.57612	-0.38287	-0.00016292	2.1666	0.00092194	1.7837	0.00075902	425.53379546548405	28.714	0.21832	28.714	28.608	28.826	0					10	4	4	0	0	0	0.70921	1	10450	10450		26.75	2.5179	1	281610			17960	1030	11249	11301	18232	18232					-0.04972338584980207
INPDAGQE	8	Unmodified	_INPDAGQE_					0	0	0			REV__ENSG00000272031|ENST00000606888|ANKRD34A	REV__ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.19573974609375	2	422.195782	842.377011	-0.95689	-0.00040399	-2.9618	-0.0012505	-3.9187	-0.0016545	422.1958936633537	42.741	0.74523	42.741	42.377	43.122	0					89	45	3	0	0	0	0.79567	1	14126	14126		17.365	0.66	1	244660	+		17961	17810	11250	11302	18233	18233					-0.0504823082137591
INQKLQQI	8	Unmodified	_INQKLQQI_					0	0	0		ZNF354A|p.K188Nfs*75|1|0.07|ENSG00000169131|chr5:178713314-178713314|T/-|frameshift_variant	ZNF354A|p.K188Nfs*75|1|0.07|ENSG00000169131|chr5:178713314-178713314|T/-|frameshift_variant	ZNF354A|p.K188Nfs*75|1|0.07|ENSG00000169131|chr5:178713314-178713314|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7953796386719	2	492.795466	983.57638	-1.2662	-0.00062398	1.0627	0.00052371	-0.20348	-0.00010027	492.7958775013168	32.002	0.28274	32.002	31.909	32.191	0					24	11	3	0	0	0	0.29152	1	10638	10638		85.359	3.0545	1	296500			17962	23152	11251	11303	18234	18234					0.08393449197183145
INRIFHEH	8	Unmodified	_INRIFHEH_					0	0	0		DNM3|p.R369H|1|0.34|ENSG00000197959|chr1:172042122-172042122|G/A|missense_variant	DNM3|p.R369H|1|0.34|ENSG00000197959|chr1:172042122-172042122|G/A|missense_variant	DNM3|p.R369H|1|0.34|ENSG00000197959|chr1:172042122-172042122|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.28515625	2	533.283057	1064.55156	1.1321	0.00060374	3.1638	0.0016872	4.2959	0.0022909	533.2849653158225	25.742	0.14703	25.742	25.642	25.789	0					6	3	2	0	0	0	0.65276	1	8241	8241		40.573	7.7602	1	88918			17963	832	11252	11304	18235	18235					0.021868141144750552
INSSLKKSTA	10	Unmodified	_INSSLKKSTA_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8065185546875	2	524.803488	1047.59242	0.58694	0.00030803	3.0037	0.0015764	3.5907	0.0018844	524.8048542961762	42.44	0.090256	42.44	42.382	42.472	0					8	5	2	0	0	0	0.41384	1	13992	13992		54.722	12.326	1	33629	+		17964	14359	11253	11305	18236	18236					0.07053110643437321
INSVSLWNAQK	11	Unmodified	_INSVSLWNAQK_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF	REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	630.3417358398438	2	630.340769	1258.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.342	1	26.342	25.842	26.842	0								0	0	0	0.41424	1	7993	7993		33.922	2.2874	1		+		17965	15138	11254	11306	18237	18237					0.04799873454794579
INTIHACVK	9	Unmodified	_INTIHACVK_					0	0	0			REV__ENSG00000244462|ENST00000374114|RBM12	REV__ENSG00000244462|ENST00000374114|RBM12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2816467285156	2	499.776219	997.537886	0.16174	8.0832E-05	0.10786	5.3906E-05	0.2696	0.00013474	499.7760811247103	24.375	1.0095	24.375	24.172	25.182	0					42	23	2	0	0	0	0.54267	1	7707	7707		27.882	0	1	300740	+		17966	17709	11255	11307	18238	18238					0.03901820291014246
INVATPDL	8	Unmodified	_INVATPDL_					0	0	0			REV__ENST00000523243.5_1_8:135490727-135577256:-|nuORF	REV__ENST00000523243.5_1_8:135490727-135577256:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7339172363281	2	421.734543	841.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.658	1	39.658	39.158	40.158	0								0	0	0	1.7419	1	15108	15108		34.173	3.6689	1		+		17967	13130	11256	11308	18239	18239					0.027464071148074254
INVQDKLQQ	9	Unmodified	_INVQDKLQQ_					0	0	0			REV__MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant	REV__MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.3004760742188	2	543.301113	1084.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.945	1	46.945	46.445	47.445	0								0	0	0	0.32356	1	17986	17986		30.504	4.9296	1		+		17968	13846	11257	11309	18240	18240					0.048762265006644157
INYVLLRHC	9	Unmodified	_INYVLLRHC_					0	0	0		tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.8119506835938	2	565.810593	1129.60663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.487	1	23.487	22.987	23.987	0								0	0	0	0.35377	1	6807	6807		11.511	0.64546	1				17969	22998	11258	11310	18241	18241					0.04701484590759719
INYYDGGGFF	10	Unmodified	_INYYDGGGFF_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.75390625	2	576.753464	1151.49238	0.019889	1.1471E-05	-0.22728	-0.00013109	-0.20739	-0.00011962	576.7533281378398	35.512	0.35657	35.512	35.265	35.622	0					35	17	3	0	0	0	0.58896	1	11986	11986		35.618	7.5368	1	250550	+		17970	21809	11259	11311	18242	18242					-0.07731126690373458
IPAAVKLTY	9	Unmodified	_IPAAVKLTY_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.29730224609375	2	488.29731	974.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.668	1	37.668	37.168	38.168	0								0	0	0	0.024296	1	14297	14297		104.75	49.242	1				17971	2292;23086	11260	11312	18243	18243					0.09176118971026881
IPAAVKLTY	9	Unmodified	_IPAAVKLTY_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.297119140625	2	488.29731	974.580068	-0.079418	-3.878E-05	-0.7462	-0.00036437	-0.82562	-0.00040315	488.2969958080404	37.502	0.24582	37.502	37.428	37.673	0					12	7	2	0	0	0	0.17062	1	14683	14683		67.494	11.989	1	91155			17972	2292;23086	11260	11312	18244	18244					0.09176118971026881
IPAAVKLTY	9	Unmodified	_IPAAVKLTY_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.29638671875	2	488.29731	974.580068	-0.52204	-0.00025491	0.011476	5.6036E-06	-0.51057	-0.00024931	488.2972154149835	37.472	0.26099	37.472	37.366	37.627	0					14	5	3	0	0	0	0.082776	1	14644	14644		77.318	21.813	1	240480			17973	2292;23086	11260	11312	18245	18245					0.09176118971026881
IPAAVSTS	8	Unmodified	_IPAAVSTS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099914550781	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.93	1	51.93	51.43	52.43	0								0	0	0	1.7419	1	20249	20249		37.028	1.8278	1		+		17974	16839	11261	11313	18246	18246					0.019344490519983992
IPAGLHGT	8	Unmodified	_IPAGLHGT_					0	0	0		ENST00000534922.5_1_12:133201238-133201883:-|nuORF	ENST00000534922.5_1_12:133201238-133201883:-|nuORF	ENST00000534922.5_1_12:133201238-133201883:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.216064453125	2	383.216321	764.418088	-2.1607	-0.00082801	2.1476	0.00082299	-0.01311	-5.0241E-06	383.21717076071536	28.978	0.21967	28.978	28.867	29.086	0					7	5	2	0	0	0	0.79176	1	9715	9715		21.702	4.9974	1	55237			17975	10474	11262	11314	18247	18247					0.0264557500876208
IPAHCKVLIK	10	Unmodified	_IPAHCKVLIK_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.2326354980469	3	374.566967	1120.67907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.97	1	19.97	19.47	20.47	0								0	0	0	0.4201	1	5528	5528		21.686	0.8486	1				17976	2807	11263	11315	18248	18248					0.12355818664286744
IPALRLTGDY	10	Unmodified	_IPALRLTGDY_					0	0	0		tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8128662109375	2	559.813856	1117.61316	1.8251	0.0010217	-2.3475	-0.0013142	-0.52236	-0.00029242	559.8121842578056	38.926	0.39532	38.926	38.729	39.124	0					16	8	3	0	0	0	0.30252	1	15359	15359		45.972	0	1	127570			17977	23046	11264	11316	18249	18249					0.05905701023084475
IPALRVVEEK	10	Unmodified	_IPALRVVEEK_					0	0	0		LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7	LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant	LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.3531494140625	2	577.350606	1152.68666	3.2779	0.0018925	0.87604	0.00050578	4.154	0.0023983	577.3511718733413	34.368	0.65184	34.368	34.261	34.913	0					27	13	3	0	0	0	0.34979	1	13179	13179		58.23	20.418	1	2136200			17978	6508	11265	11317	18250	18250					0.11642249465558052
IPAPAEKTPV	10	Unmodified	_IPAPAEKTPV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7974548339844	2	511.797675	1021.5808	-0.34078	-0.00017441	-1.1169	-0.00057164	-1.4577	-0.00074605	511.7974863301995	26.989	0.15376	26.989	26.9	27.054	0					9	5	3	0	0	0	0.41335	1	8556	8556		54.776	25.627	1	93841			17979	3386	11266	11318	18251	18251					0.07086913620094037
IPARIVTNY	9	Unmodified	_IPARIVTNY_					0	0	0		ENSG00000124491|ENST00000264870|F13A1;F13A1|p.F340L|1|0.13|ENSG00000124491|chr6:6222125-6222125|G/T|missense_variant;F13A1|p.K505Sfs*9|1|0.34|ENSG00000124491|chr6:6174813-6174813|T/-|frameshift_variant;F13A1|p.V564Sfs*13|1|0.09|ENSG00000124491|chr6:6174637-6174637|C/-|frameshift_variant	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.8034057617188	2	523.803291	1045.59203	1.6258	0.00085162	-2.3761	-0.0012446	-0.75024	-0.00039298	523.801831767121	32.615	0.51991	32.615	32.355	32.875	0					20	10	3	0	0	0	0.14578	1	12326	12326		62.107	22.855	1	543240			17980	3377	11267	11319	18252	18252					0.07105735714230832
IPAVATKSVA	10	Unmodified	_IPAVATKSVA_					0	0	0			REV__SLC25A31|p.P217Afs*28|1|0.42|ENSG00000151475|chr4:127768762-127768763|-/A|frameshift_variant	REV__SLC25A31|p.P217Afs*28|1|0.42|ENSG00000151475|chr4:127768762-127768763|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7268981933594	2	478.792392	955.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.92	1	23.92	23.42	24.42	0								0	0	0	0.40002	1	7379	7379		30.504	2.2494	1		+		17981	15476	11268	11320	18253	18253					0.09066930965650499
IPCYWESQ	8	Unmodified	_IPCYWESQ_					0	0	0		ZC3H11A|p.N70S|1|0.71|ENSG00000058673|chr1:203828333-203828333|A/G|missense_variant	ZC3H11A|p.N70S|1|0.71|ENSG00000058673|chr1:203828333-203828333|A/G|missense_variant	ZC3H11A|p.N70S|1|0.71|ENSG00000058673|chr1:203828333-203828333|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.22314453125	2	513.223485	1024.43242	1.4469	0.00074257	-2.4066	-0.0012351	-0.9597	-0.00049254	513.2224507352271	14.651	0.52113	14.651	14.541	15.063	0					17	10	3	0	0	0	0.66372	1	3706	3706		38.806	3.6541	1	337470			17982	23130	11269	11321	18254	18254					-0.0788214062527004
IPDDLKQLY	9	Unmodified	_IPDDLKQLY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.801025390625	2	552.800414	1103.58628	1.8188	0.0010054	-1.9866	-0.0010982	-0.16781	-9.2767E-05	552.7990669089219	42.136	0.35321	42.136	42.065	42.418	0					16	9	3	0	0	0	0.078509	1	16807	16807		85.161	2.9203	1	313310			17983	5985	11270	11322	18255	18255					0.03862592411906007
IPDGHTKEM	9	Unmodified	_IPDGHTKEM_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2477416992188	2	514.247492	1026.48043	1.1489	0.00059081	-0.90756	-0.00046671	0.24132	0.0001241	514.2469902588051	19.448	0.43912	19.448	19.356	19.795	0					27	10	4	0	0	0	0.13726	1	5899	5899		70.816	21.375	1	508600			17984	4092	11271	11323	18256	18256					-0.03175066705216523
IPDKFVVGY	9	Unmodified	_IPDKFVVGY_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.287353515625	2	519.286943	1036.55933	0.29064	0.00015092	1.0566	0.00054868	1.3472	0.0006996	519.287649729729	41.139	0.35729	41.139	40.985	41.343	0					20	8	3	0	0	0	0.034359	1	16306	16306		104.75	30.772	1	412230			17985	5824	11272	11324	18257	18257					0.04251528591407805
IPDKFVVGY	9	Unmodified	_IPDKFVVGY_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2877197265625	2	519.286943	1036.55933	1.5988	0.00083026	1.0706	0.00055595	2.6694	0.0013862	519.2878277942083	41.1	0.14275	41.1	41.016	41.159	0					5	3	2	0	0	0	0.098791	1	16340	16340		79.713	35.596	1	126310			17986	5824	11272	11324	18258	18258					0.04251528591407805
IPDSKIALS	9	Unmodified	_IPDSKIALS_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.27789306640625	2	472.276575	942.538597	0.21154	9.9906E-05	-1.3046	-0.00061615	-1.0931	-0.00051625	472.2763282490172	35.519	0.53017	35.519	35.192	35.722	0					24	14	2	0	0	0	0.27249	1	13225	13225		52.937	1.6012	1	74034	+		17987	15204	11273	11325	18259	18259					0.06502938211713172
IPDTEDEI	8	Unmodified	_IPDTEDEI_					0	0	0		CRBN|p.T425M|1|0.39|ENSG00000113851|chr3:3150920-3150920|G/A|missense_variant;ENST00000459840.5_1_3:3192551-3196584:-|nuORF;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN	CRBN|p.T425M|1|0.39|ENSG00000113851|chr3:3150920-3150920|G/A|missense_variant	CRBN|p.T425M|1|0.39|ENSG00000113851|chr3:3150920-3150920|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.216796875	2	466.21638	930.418207	0.65611	0.00030589	0.14354	6.6923E-05	0.79966	0.00037281	466.216357209275	21.034	0.26464	21.034	20.926	21.19	0					10	5	3	0	0	0	0.68754	1	6796	6796		35.201	5.3592	1	391640			17988	688	11274	11326	18260	18260					-0.04978514572576387
IPDTIVVVAG	10	Unmodified	_IPDTIVVVAG_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2928161621094	2	492.292225	982.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.483	1	43.483	42.983	43.983	0								0	0	0	0.37816	1	13718	13718		37.159	2.9866	1				17989	3927	11275	11327	18261	18261					0.07791511245807214
IPDTREHS	8	Unmodified	_IPDTREHS_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7371826171875	2	477.735606	953.456658	0.41029	0.00019601	1.5056	0.0007193	1.9159	0.00091531	477.736663610655	34.527	0.32984	34.527	34.372	34.702	0					20	8	3	0	0	0	0.72381	1	12848	12848		30.504	0.6621	1	344180	+		17990	17278	11276	11328	18262	18262					-0.021931641473884156
IPEAAPIRL	9	Unmodified	_IPEAAPIRL_					0	0	0			REV__PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant	REV__PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.2017517089844	3	327.202682	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.923	1	34.923	34.423	35.423	0								0	0	0	0.38913	1	11796	11796		14.137	0.68308	1		+		17991	17054	11277	11329	18263	18263					0.09606637202557522
IPELVTER	8	Unmodified	_IPELVTER_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7743835449219	2	478.7742	955.533846	-0.26295	-0.00012589	-0.42229	-0.00020218	-0.68524	-0.00032808	478.7739792325451	24.061	0.28031	24.061	23.869	24.15	0					14	9	2	0	0	0	0.65276	1	7261	7261		40.573	4.9543	1	72315	+		17992	16632	11278	11330	18264	18264					0.054300540689382615
IPENRVVSY	9	Unmodified	_IPENRVVSY_					0	0	0		ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7918090820312	2	538.790381	1075.56621	1.5072	0.00081205	0.86302	0.00046498	2.3702	0.001277	538.7907880401032	29.588	0.22602	29.588	29.497	29.723	0					11	8	2	0	0	0	0.28897	1	9350	9350		51.193	15.574	1	59138			17993	2424	11279	11331	18265	18265					0.031448414719761786
IPENRVVSY	9	Unmodified	_IPENRVVSY_					0	0	0		ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7904052734375	2	538.790381	1075.56621	2.0096	0.0010827	-0.9667	-0.00052085	1.0429	0.0005619	538.7897208858436	29.862	0.44385	29.862	29.734	30.178	0					33	11	5	0	0	0	0.18416	1	10717	10717		63.534	12.198	1	430890			17994	2424	11279	11331	18266	18266					0.031448414719761786
IPENRVVSY	9	Unmodified	_IPENRVVSY_					0	0	0		ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7911987304688	2	538.790381	1075.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.671	1	29.671	29.171	30.171	0								0	0	0	0.22284	1	9681	9681		47.657	12.039	1				17995	2424	11279	11331	18267	18267					0.031448414719761786
IPENRVVSY	9	Unmodified	_IPENRVVSY_					0	0	0		ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.790771484375	2	538.790381	1075.56621	1.008	0.00054311	0.51712	0.00027862	1.5251	0.00082173	538.7903797529341	29.633	0.33715	29.633	29.539	29.876	0					14	9	3	0	0	0	0.40353	1	10000	10000		41.427	3.6151	1	69457			17996	2424	11279	11331	18268	18268					0.031448414719761786
IPENRVVSY	9	Unmodified	_IPENRVVSY_					0	0	0		ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7904052734375	2	538.790381	1075.56621	2.0459	0.0011023	-1.3265	-0.00071472	0.71936	0.00038758	538.7895665506826	29.79	0.46617	29.79	29.633	30.099	0					23	9	3	0	0	0	0.11411	1	10967	10967		76.17	41.018	1	653250			17997	2424	11279	11331	18269	18269					0.031448414719761786
IPGRARHPGL	10	Unmodified	_IPGRARHPGL_					0	0	0			REV__HSF4|p.S253G|1|0.14|ENSG00000102878|chr16:67167502-67167502|A/G|missense_variant	REV__HSF4|p.S253G|1|0.14|ENSG00000102878|chr16:67167502-67167502|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3212280273438	2	537.319974	1072.6254	2.0962	0.0011263	0.88305	0.00047448	2.9792	0.0016008	537.3204379101187	29.326	0.6579	29.326	29.087	29.745	0					38	16	4	0	0	0	0.43008	1	10418	10418		31.955	31.955	1	2091900	+		17998	20752	11280	11332	18270	18270					0.09198782276780548
IPHSNTSI	8	Unmodified	_IPHSNTSI_					0	0	0			REV__nc|ENSG00000138081|Q86XK2-6|FBXO11	REV__nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.7301330566406	2	434.729792	867.445031	0.23431	0.00010186	-0.58767	-0.00025548	-0.35336	-0.00015361	434.7295777191045	24.863	0.42001	24.863	24.609	25.029	0					22	9	3	0	0	0	0.26534	1	7757	7757		94.006	8.6469	1	299590	+		17999	14956	11281	11333	18271	18271					0.006006388292917109
IPHSTLEY	8	Unmodified	_IPHSTLEY_					0	0	0		nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2452392578125	2	480.245275	958.475997	-0.30467	-0.00014632	-0.10056	-4.8291E-05	-0.40522	-0.00019461	480.2450224723085	32.384	0.27702	32.384	32.277	32.554	0					12	8	2	0	0	0	0.57802	1	11257	11257		52.299	7.7681	1	53114			18000	11705	11282	11334	18272	18272					-0.004902078564668955
IPHVEHLAQ	9	Unmodified	_IPHVEHLAQ_					0	0	0			REV__CBL|p.R206Q|1|0.33|ENSG00000110395|chr11:119273894-119273894|G/A|missense_variant	REV__CBL|p.R206Q|1|0.33|ENSG00000110395|chr11:119273894-119273894|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2907104492188	2	522.285266	1042.55598	3.3985	0.001775	-0.8517	-0.00044483	2.5468	0.0013301	522.2847443341981	38.962	0.90284	38.962	38.61	39.513	0					26	19	2	0	0	0	0.18605	1	15259	15259		63.306	4.5243	1	936870	+		18001	12340	11283	11335	18273	18273					0.036402785373638835
IPIANTEKY	9	Unmodified	_IPIANTEKY_					0	0	0		nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7866821289062	2	524.787307	1047.56006	0.54749	0.00028732	-1.3667	-0.00071725	-0.81926	-0.00042993	524.7863369136774	29.554	0.1607	29.554	29.456	29.617	0					11	3	4	0	0	0	0.048471	1	10832	10832		95.815	10.9	1	172380			18002	1673	11284	11336	18274	18274					0.038183232404207956
IPIKNVEM	8	Unmodified	_IPIKNVEM_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2669677734375	2	472.267696	942.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.446	1	32.446	31.946	32.946	0								0	0	0	1.7419	1	10492	10492		47.657	7.0847	1				18003	1815	11285	11337	18275	18275					0.04727899685212833
IPIKNVEM	8	Unmodified	_IPIKNVEM_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.26824951171875	2	472.267696	942.520839	0.61799	0.00029186	-0.26658	-0.0001259	0.35141	0.00016596	472.2676921549991	32.763	0.33082	32.763	32.639	32.969	0					18	8	3	0	0	0	0.35045	1	12035	12035		76.774	2.7994	1	303060			18004	1815	11285	11337	18276	18276					0.04727899685212833
IPIKNVEM	8	Unmodified	_IPIKNVEM_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2678527832031	2	472.267696	942.520839	-0.12307	-5.8121E-05	-0.5871	-0.00027727	-0.71016	-0.00033539	472.26745957076804	32.716	0.4207	32.716	32.567	32.987	0					26	10	4	0	0	0	0.3049	1	12440	12440		82.241	23.459	1	692070			18005	1815	11285	11337	18277	18277					0.04727899685212833
IPIKNVEM	8	Unmodified	_IPIKNVEM_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2675476074219	2	472.267696	942.520839	-0.56688	-0.00026772	0.081083	3.8293E-05	-0.48579	-0.00022942	472.26776602444977	32.687	0.31858	32.687	32.573	32.892	0					16	6	3	0	0	0	0.37144	1	12354	12354		74.255	20.904	1	719440			18006	1815	11285	11337	18278	18278					0.04727899685212833
IPKDGSLASY	10	Unmodified	_IPKDGSLASY_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7776489257812	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.735	1	39.735	39.235	40.235	0								0	0	0	0.29594	1	15725	15725		39.253	0	1				18007	815	11286	11338	18279	18279					0.016537328607682866
IPKEKFQV	8	Unmodified	_IPKEKFQV_					0	0	0		TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant;ENSG00000135966|ENST00000393359|TGFBRAP1	TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant	TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7944030761719	2	494.794935	987.575317	0.68172	0.00033731	-1.3647	-0.00067522	-0.68294	-0.00033791	494.7946806049043	41.713	0.1336	41.713	41.656	41.789	0					8	5	2	0	0	0	0.58686	1	16409	16409		40.778	0	1	99663			18008	4041	11287	11339	18280	18280					0.08103234828274708
IPKSSDAPPGT	11	Unmodified	_IPKSSDAPPGT_					0	0	0			REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.27783203125	2	535.279846	1068.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.589	1	11.589	11.089	12.089	0								0	0	0	0.45674	1	2410	2410		16.717	2.9421	1		+		18009	12336	11288	11340	18281	18281					0.013608313724262189
IPLAMSSIM	9	Oxidation (M)	_IPLAM(Oxidation (M))SSIM_		IPLAM(0.998)SSIM(0.002)		IPLAM(27)SSIM(-27)	0	0	1			REV__GPR82|p.T48Hfs*11|1|0.4|ENSG00000171657|chrX:41727162-41727162|A/-|frameshift_variant	REV__GPR82|p.T48Hfs*11|1|0.4|ENSG00000171657|chrX:41727162-41727162|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7534484863281	2	489.753564	977.492575	0.6021	0.00029488	-0.89777	-0.00043969	-0.29567	-0.00014481	489.7532004493566	29.422	0.39544	29.422	29.321	29.717	0					31	8	6	0	0	0	0.41354	1	10880	10880		40.573	40.573	2	4358500	+		18010	16425	11289	11341	18282	18282		625			0.0029283371362680555
IPLPKAADLAR	11	Unmodified	_IPLPKAADLAR_					0	0	0			REV__ENSG00000135999|ENST00000258484|EPC2	REV__ENSG00000135999|ENST00000258484|EPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	582.8584594726562	2	582.858598	1163.70264	0.53611	0.00031248	-0.087002	-5.071E-05	0.44911	0.00026177	582.8585260020769	24.127	0.16218	24.127	24.052	24.215	0					9	5	2	0	0	0	0.77123	1	7110	7110		20.837	0.84038	1	47026	+		18011	14838	11290	11342	18283	18283					0.1273395570244702
IPLYRIKDIRM	11	Unmodified	_IPLYRIKDIRM_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	709.4215087890625	2	709.421039	1416.82753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.999	1	44.999	44.499	45.499	0								0	0	0	0.45674	1	17460	17460		9.1829	0	1				18012	29	11291	11343	18284	18284					0.1357850484730534
IPMMTPSDIT	10	Unmodified	_IPMMTPSDIT_					0	0	0		nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.2686157226562	2	553.267035	1104.51952	1.1419	0.00063176	-0.56194	-0.0003109	0.57992	0.00032085	553.266879739688	20.415	0.2264	20.415	20.265	20.492	0					8	5	2	0	0	0	0.51121	1	5722	5722		44.117	0	1	79542			18013	7520	11292	11344	18285	18285					-0.02856102465875665
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2982482910156	2	510.297842	1018.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.313	1	42.313	41.813	42.813	0								0	0	0	0.33029	1	13470	13470		29.17	2.374	1				18014	1937	11293	11345	18286	18286					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2981872558594	2	510.297842	1018.58113	0.96754	0.00049373	-0.32853	-0.00016765	0.63902	0.00032609	510.29770340403024	42.639	0.33269	42.639	42.521	42.853	0					40	16	4	0	0	0	0.1424	1	16114	16114		69.628	21.97	1	755470			18015	1937	11293	11345	18287	18287					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7995300292969	2	510.297842	1018.58113	0.32338	0.00016502	-0.11089	-5.6589E-05	0.21249	0.00010843	510.29777944478747	42.586	0.33869	42.586	42.465	42.804	0					40	16	4	0	0	0	0.12834	1	16680	16680		72.879	26.907	1	1505500			18016	1937	11293	11345	18288	18288					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2978210449219	2	510.297842	1018.58113	0.74095	0.0003781	0.83696	0.0004271	1.5779	0.0008052	510.2982211422773	42.409	0.14121	42.409	42.308	42.45	0					13	8	2	0	0	0	0.11898	1	14816	14816		75.043	27.386	1	61262			18017	1937	11293	11345	18289	18289					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.297607421875	2	510.297842	1018.58113	-0.008437	-4.3054E-06	0.22753	0.00011611	0.21909	0.0001118	510.2979344991597	42.53	0.4155	42.53	42.418	42.834	0					29	11	4	0	0	0	0.056004	1	16952	16952		93.143	38.367	1	2423000			18018	1937	11293	11345	18290	18290					0.07258333339939327
IPNENEAQF	9	Unmodified	_IPNENEAQF_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2495727539062	2	531.248546	1060.48254	0.72447	0.00038487	0.18964	0.00010075	0.91411	0.00048562	531.2486657506755	35.454	0.86853	35.454	35.179	36.047	0					36	17	3	0	0	0	0.22837	1	13624	13624		58.23	13.853	1	329650			18019	1994	11294	11346	18291	18291					-0.045283146957672216
IPNNLLQW	8	Unmodified	_IPNNLLQW_					0	0	0		PKDREJ|p.S297L|1|0.22|ENSG00000130943|chr22:46262433-46262433|G/A|missense_variant	PKDREJ|p.S297L|1|0.22|ENSG00000130943|chr22:46262433-46262433|G/A|missense_variant	PKDREJ|p.S297L|1|0.22|ENSG00000130943|chr22:46262433-46262433|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.1894226074219	3	333.187032	996.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.424	1	43.424	42.924	43.924	0								0	0	0	1.7419	1	16984	16984		23.042	0	1				18020	11941	11295	11347	18292	18292					0.04085777651414446
IPNPVDLWL	9	Unmodified	_IPNPVDLWL_					0	0	0		PKDREJ|p.R1173W|1|0.35|ENSG00000130943|chr22:46259806-46259806|G/A|missense_variant	PKDREJ|p.R1173W|1|0.35|ENSG00000130943|chr22:46259806-46259806|G/A|missense_variant	PKDREJ|p.R1173W|1|0.35|ENSG00000130943|chr22:46259806-46259806|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.8018798828125	2	533.800217	1065.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.474	1	43.474	42.974	43.974	0								0	0	0	0.3693	1	14218	14218		19.997	2.6318	1				18021	11940	11296	11348	18293	18293					0.055712174827021954
IPNQGEILV	9	Unmodified	_IPNQGEILV_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7819519042969	2	491.782025	981.549496	-0.73462	-0.00036127	0.28121	0.00013829	-0.45341	-0.00022298	491.7820737599245	35.526	0.2678	35.526	35.408	35.676	0					14	7	3	0	0	0	0.45358	1	13763	13763		37.159	0	1	277640			18022	831	11297	11349	18294	18294					0.057983405860113635
IPNSIELR	8	Unmodified	_IPNSIELR_					0	0	0			REV__MYO18A|p.T58M|1|0.35|ENSG00000196535|chr17:29166768-29166768|G/A|missense_variant	REV__MYO18A|p.T58M|1|0.35|ENSG00000196535|chr17:29166768-29166768|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.274169921875	2	471.274367	940.53418	-0.60381	-0.00028456	0.059562	2.807E-05	-0.54425	-0.00025649	471.2745312069207	30.764	0.57259	30.764	30.596	31.169	0					27	13	3	0	0	0	0.66372	1	11144	11144		38.806	1.647	1	645300	+		18023	17265	11298	11350	18295	18295					0.0615347378881097
IPPAFNNYA	9	Unmodified	_IPPAFNNYA_					0	0	0		ENST00000556408.5_1_14:71996071-72040486:+|nuORF	ENST00000556408.5_1_14:71996071-72040486:+|nuORF	ENST00000556408.5_1_14:71996071-72040486:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7532958984375	2	503.753267	1005.49198	1.1871	0.00059798	-0.63785	-0.00032132	0.5492	0.00027666	503.7530868378641	37.98	0.1524	37.98	37.886	38.039	0					6	3	2	0	0	0	0.32741	1	14909	14909		47.916	3.7988	1	110200			18024	10664	11299	11351	18296	18296					-0.010545016195806056
IPPGAPGEQPS	11	Unmodified	_IPPGAPGEQPS_					0	0	0			REV__ENST00000336314.8_2_5:154193974-154194505:+|nuORF	REV__ENST00000336314.8_2_5:154193974-154194505:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.26708984375	2	525.266739	1048.51892	0.66989	0.00035187	-1.1434	-0.00060057	-0.47348	-0.0002487	525.2660454222387	24.774	0.28021	24.774	24.677	24.957	0					15	8	3	0	0	0	0.60656	1	7409	7409		36.447	0	1	140890	+		18025	18413	11300	11352	18297	18297					-0.00339437799038933
IPPKATPEPAI	11	Unmodified	_IPPKATPEPAI_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.8331298828125	2	567.331882	1132.64921	-0.41484	-0.00023535	-0.65974	-0.00037429	-1.0746	-0.00060965	567.8330366529458	50.316	0.19766	50.316	50.186	50.384	0					13	12	2	0	0	0	0.74306	1	16486	16486		23.523	1.5628	1	37707			18026	7237	11301	11353	18298	18298					0.0881915819995811
IPPKQLHR	8	Unmodified	_IPPKQLHR_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|310|2|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|310|2|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|310|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	330.20574951171875	3	330.206538	987.597784	-0.70264	-0.00023202	-1.891	-0.00062441	-2.5936	-0.00085643	330.2055915605894	28.425	0.23729	28.425	28.337	28.574	0					11	8	2	0	0	0	0.75243	1	9169	9169		29.15	4.9468	1	187240			18027	11193	11302	11354	18299	18299					0.10348879016567025
IPPLIKSVV	9	Unmodified	_IPPLIKSVV_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.32281494140625	2	483.323328	964.632104	0.88052	0.00042557	-1.7643	-0.00085275	-0.88383	-0.00042718	483.3222112814207	44.509	0.055073	44.509	44.483	44.538	0					4	2	2	0	0	0	0.55282	1	17838	17838		26.796	1.3459	1	27026			18028	847	11303	11355	18300	18300					0.1483728238480353
IPQLPAPPK	9	Unmodified	_IPQLPAPPK_					0	0	0		ENST00000585605.1_1_19:5678827-5679734:-|nuORF;ENSG00000174917|ENST00000309324|MICOS13	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7971496582031	2	480.797478	959.580402	-0.63758	-0.00030655	0.25465	0.00012243	-0.38293	-0.00018411	480.79748886612487	34.139	1.0101	34.139	33.399	34.409	0					33	21	2	0	0	0	0.33044	1	13077	13077		47.657	3.5405	1	88291			18029	6521	11304	11356	18301	18301					0.09899538690888221
IPQNVAPN	8	Unmodified	_IPQNVAPN_					0	0	0		TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;TG|p.E2744Vfs*20|1|0.07|ENSG00000042832|chr8:133134716-133134717|GG/-|frameshift_variant;ENSG00000042832|ENST00000220616|TG	TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.732177734375	2	426.732335	851.450116	0.88594	0.00037806	-1.3478	-0.00057514	-0.46183	-0.00019708	426.7318157995117	27.549	0.30231	27.549	27.46	27.762	0					15	7	3	0	0	0	0.6282	1	9648	9648		44.531	0	1	442400			18030	1205	11305	11357	18302	18302					0.01844942691889173
IPQQSGALY	9	Unmodified	_IPQQSGALY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.759033203125	2	488.758549	975.502546	-0.077309	-3.7785E-05	0.33372	0.00016311	0.25641	0.00012532	488.758610897951	35.576	0.78314	35.576	35.224	36.007	0					46	22	3	0	0	0	0.25716	1	13678	13678		54.776	8.8041	1	224320			18031	1085	11306	11358	18303	18303					0.013814810348549145
IPRCCAQGVK	10	Unmodified	_IPRCCAQGVK_					0	0	0			REV__nc|ENSG00000168621|P39905-5|GDNF	REV__nc|ENSG00000168621|P39905-5|GDNF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7817993164062	2	537.780979	1073.5474	-0.30966	-0.00016653	0.45144	0.00024277	0.14177	7.6243E-05	537.7811988310614	22.265	0.1966	22.265	22.168	22.365	0					18	6	4	0	0	0	0.51121	1	6503	6503		44.117	3.5442	1	1299400	+		18032	16269	11307	11359	18304	18304					0.013572653048868233
IPRILALKQ	9	Unmodified	_IPRILALKQ_					0	0	0		ENSG00000169902|ENST00000304842|TPST1;TPST1|p.F162Lfs*3|1|0.44|ENSG00000169902|chr7:66240908-66240908|T/-|frameshift_variant	ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.2376708984375	3	351.237726	1050.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.9	1	43.9	43.4	44.4	0								0	0	0	0.40728	1	14312	14312		5.5578	0.65209	1				18033	6195	11308	11360	18305	18305					0.16803178398959062
IPRMMWKI	8	Unmodified	_IPRMMWKI_					0	0	0			REV__ENST00000588072.5_1_18:11884309-11884447:-|nuORF	REV__ENST00000588072.5_1_18:11884309-11884447:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.801025390625	2	537.801183	1073.58781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.185	1	45.185	44.685	45.685	0								0	0	0	1.7419	1	18100	18100		35.201	0	1		+		18034	20500	11309	11361	18306	18306					0.053962316953175105
IPSEHWNKT	9	Unmodified	_IPSEHWNKT_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|54|3|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|54|3|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|54|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2788696289062	2	556.28018	1110.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.691	1	15.691	15.191	16.191	0								0	0	0	0.3119	1	4341	4341		32.812	6.0163	1				18035	11305	11310	11362	18307	18307					-0.00504329187856456
IPSFPTYDY	9	Unmodified	_IPSFPTYDY_					0	0	0		PASD1|p.K76Nfs*3|1|0.1|ENSG00000166049|chrX:151620945-151620945|A/-|frameshift_variant;PASD1|p.N139Tfs*3|1|0.05|ENSG00000166049|chrX:151621589-151621590|-/CTTT|frameshift_variant;nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;PASD1|p.N589Tfs*62|1|0.39|ENSG00000166049|chrX:151672508-151672508|A/-|frameshift_variant;PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant;ENSG00000166049|ENST00000370357|PASD1	PASD1|p.K76Nfs*3|1|0.1|ENSG00000166049|chrX:151620945-151620945|A/-|frameshift_variant	PASD1|p.K76Nfs*3|1|0.1|ENSG00000166049|chrX:151620945-151620945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7568969726562	2	551.758215	1101.50188	-1.3102	-0.0007229	-0.66645	-0.00036772	-1.9766	-0.0010906	551.7576915124002	28.639	0.16391	28.639	28.586	28.75	0					9	4	3	0	0	0	0.2873	1	9537	9537		51.335	0	1	132810			18036	5856	11311	11363	18308	18308					-0.04481358404859748
IPSSVIHPAM	10	Unmodified	_IPSSVIHPAM_					0	0	0		nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	nc|ENSG00000115211|Q9UI10-3|EIF2B4	nc|ENSG00000115211|Q9UI10-3|EIF2B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2841186523438	2	526.283877	1050.5532	0.61091	0.00032151	-0.22027	-0.00011593	0.39063	0.00020558	526.2838088414679	34.709	0.21199	34.709	34.538	34.75	0					7	4	3	0	0	0	0.37692	1	13335	13335		58.782	12.83	1	93237			18037	2889	11312	11364	18309	18309					0.029946870881985888
IPSTRAAPHGP	11	Unmodified	_IPSTRAAPHGP_					0	0	0		nc|ENSG00000276070|Q8NHW4-3|CCL4L1;nc|ENSG00000276070|Q8NHW4-10|CCL4L1	nc|ENSG00000276070|Q8NHW4-3|CCL4L1	nc|ENSG00000276070|Q8NHW4-3|CCL4L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3076171875	2	552.301447	1102.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.886	1	30.886	30.386	31.386	0								0	0	0	0.14038	1	11485	11485		69.628	8.6557	1				18038	11804	11313	11365	18310	18310					0.041150659403683676
IPTHVRAQY	9	Unmodified	_IPTHVRAQY_					0	0	0		ENSG00000243709|ENST00000272134|LEFTY1	ENSG00000243709|ENST00000272134|LEFTY1	ENSG00000243709|ENST00000272134|LEFTY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7994995117188	2	542.79854	1083.58253	1.8841	0.0010227	-0.95432	-0.000518	0.9298	0.00050469	542.7983902231592	23.316	0.23445	23.316	23.134	23.369	0					10	5	3	0	0	0	0.070005	1	7717	7717		62.107	7.3427	1	340230			18039	7956	11314	11366	18311	18311					0.04407967428710435
IPTHVRAQY	9	Unmodified	_IPTHVRAQY_					0	0	0		ENSG00000243709|ENST00000272134|LEFTY1	ENSG00000243709|ENST00000272134|LEFTY1	ENSG00000243709|ENST00000272134|LEFTY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7993774414062	2	542.79854	1083.58253	0.61873	0.00033585	0.65291	0.0003544	1.2716	0.00069024	542.7990035302719	23.221	0.16787	23.221	23.133	23.301	0					8	3	3	0	0	0	0.28897	1	7867	7867		44.117	6.3053	1	233290			18040	7956	11314	11366	18312	18312					0.04407967428710435
IPTKQTQIF	9	Unmodified	_IPTKQTQIF_					0	0	0		ENSG00000204390|ENST00000375654|HSPA1L;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3106079101562	2	538.310949	1074.60735	0.29866	0.00016077	-0.00095302	-5.1302E-07	0.29771	0.00016026	538.3108743836309	33.233	0.56857	33.233	33.036	33.605	0					33	13	3	0	0	0	0.30951	1	12826	12826		49.442	5.0644	1	144560			18041	7697	11315	11367	18313	18313					0.0730260251141317
IPTKQTQTF	9	Unmodified	_IPTKQTQTF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2929077148438	2	532.292756	1062.57096	0.37499	0.00019961	0.41028	0.00021839	0.78527	0.00041799	532.2929389570955	24.791	0.75665	24.791	24.605	25.362	0					62	22	4	0	0	0	0.047855	2	7312	7312;7477		96.034	33.926	1	1022300			18042	2601;3488	11316	11368	18314;18315	18314					0.042177256146942455
IPTKQTQTF	9	Unmodified	_IPTKQTQTF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.293212890625	2	532.292756	1062.57096	0.12543	6.6764E-05	0.45206	0.00024063	0.57749	0.00030739	532.2929478864243	25.114	0.89169	25.114	24.852	25.744	0					76	21	5	0	0	0	0.013878	2	8464	8464;8626		132.76	50.517	1	5578000			18043	2601;3488	11316	11368	18316;18317	18316					0.042177256146942455
IPTKQTQTF	9	Unmodified	_IPTKQTQTF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2926635742188	2	532.292756	1062.57096	0.28812	0.00015336	0.17521	9.3264E-05	0.46333	0.00024663	532.2929047946916	24.82	0.64571	24.82	24.636	25.282	0					51	21	3	0	0	0	0.056004	2	7599	7599;7750		93.143	20.203	1	649490			18044	2601;3488	11316	11368	18318;18319	18318					0.042177256146942455
IPTKQTQTF	9	Unmodified	_IPTKQTQTF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2929077148438	2	532.292756	1062.57096	0.2888	0.00015373	0.17671	9.4059E-05	0.46551	0.00024779	532.2928003490499	25.073	0.91134	25.073	24.826	25.738	0					57	18	5	0	0	0	0.011389	2	8966	8795;8966		138.06	39.433	1	3118100			18045	2601;3488	11316	11368	18320;18321	18321					0.042177256146942455
IPTKQTQTF	9	Unmodified	_IPTKQTQTF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2933959960938	2	532.292756	1062.57096	-1.2707	-0.00067639	1.3061	0.00069521	0.03537	1.8827E-05	532.2938484308547	24.907	0.66986	24.907	24.626	25.296	0					47	15	4	0	0	0	0.017421	2	7780	7780;7949		126.24	54.365	1	911010			18046	2601;3488	11316	11368	18322;18323	18322					0.042177256146942455
IPTRVVTNY	9	Unmodified	_IPTRVVTNY_					0	0	0		ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF	ENSG00000198959|ENST00000361475|TGM2	ENSG00000198959|ENST00000361475|TGM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.8012084960938	2	531.800749	1061.58694	0.36591	0.00019459	0.34276	0.00018228	0.70868	0.00037687	531.8008520609128	30.455	0.0863	30.455	30.414	30.501	0					6	3	2	0	0	0	0.3269	1	9711	9711		47.96	10.148	1	75332			18047	7646	11317	11369	18324	18324					0.058614318515992636
IPTRVVTNY	9	Unmodified	_IPTRVVTNY_					0	0	0		ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF	ENSG00000198959|ENST00000361475|TGM2	ENSG00000198959|ENST00000361475|TGM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.801025390625	2	531.800749	1061.58694	0.12244	6.5113E-05	0.88365	0.00046993	1.0061	0.00053504	531.8010027942298	30.738	0.27482	30.738	30.641	30.916	0					14	6	4	0	0	0	0.16806	1	11104	11104		65.465	3.358	1	714890			18048	7646	11317	11369	18325	18325					0.058614318515992636
IPTRVVTNY	9	Unmodified	_IPTRVVTNY_					0	0	0		ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF	ENSG00000198959|ENST00000361475|TGM2	ENSG00000198959|ENST00000361475|TGM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.8013305664062	2	531.800749	1061.58694	1.1681	0.00062118	-0.47586	-0.00025307	0.6922	0.00036811	531.8006048833352	30.508	0.23582	30.508	30.431	30.667	0					11	6	2	0	0	0	0.067603	1	10390	10390		89.029	32.308	1	460950			18049	7646	11317	11369	18326	18326					0.058614318515992636
IPVDMKDNY	9	Unmodified	_IPVDMKDNY_					0	0	0		ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant;ENSG00000132623|ENST00000378392|ANKEF1	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.7626342773438	2	547.762975	1093.5114	1.8512	0.001014	-1.5613	-0.00085523	0.28988	0.00015879	547.7622341285045	32.672	0.37357	32.672	32.424	32.798	0					18	9	2	0	0	0	0.38666	1	11989	11989		42.864	0.46813	1	128130			18050	150	11318	11370	18327	18327					-0.031619133909771335
IPVDMKDNY	9	Unmodified	_IPVDMKDNY_					0	0	0		ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant;ENSG00000132623|ENST00000378392|ANKEF1	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7633056640625	2	547.762975	1093.5114	0.52651	0.0002884	0.2299	0.00012593	0.75641	0.00041433	547.7631937194851	32.534	0.52055	32.534	32.371	32.892	0					15	10	2	0	0	0	0.10915	1	12287	12287		77.318	11.514	1	170780			18051	150	11318	11370	18328	18328					-0.031619133909771335
IPVEEAAARY	10	Unmodified	_IPVEEAAARY_					0	0	0			REV__ENSG00000083123|ENST00000320393|BCKDHB	REV__ENSG00000083123|ENST00000320393|BCKDHB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2984008789062	2	559.795663	1117.57677	1.8256	0.001022	2.2204	0.001243	4.046	0.0022649	559.7971543272369	30.295	0.44653	30.295	30.131	30.578	0					20	9	3	0	0	0	0.41335	1	11253	11253		54.776	1.8396	1	1503800	+		18052	13328	11319	11371	18329	18329					0.022688241263722375
IPVEQKEGAF	10	Unmodified	_IPVEQKEGAF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.798828125	2	559.298039	1116.58152	1.5981	0.00089381	-0.99125	-0.0005544	0.60684	0.0003394	559.2983005967305	30.166	0.24678	30.166	30.031	30.278	0					9	6	2	0	0	0	0.44292	1	10231	10231		51.528	1.9917	1	29341			18053	5826	11320	11372	18330	18330					0.027897082691197284
IPVEQKEGAF	10	Unmodified	_IPVEQKEGAF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7982177734375	2	559.298039	1116.58152	1.3969	0.00078131	-1.7896	-0.0010009	-0.39265	-0.00021961	559.7982729423202	30.32	0.31048	30.32	30.147	30.458	0					19	6	4	0	0	0	0.31894	2	11191	11191;11211		65.157	17.198	1	608670			18054	5826	11320	11372	18331;18332	18331					0.027897082691197284
IPVGTHEF	8	Unmodified	_IPVGTHEF_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.23492431640625	2	450.23471	898.454868	-0.10031	-4.5162E-05	-0.16675	-7.5076E-05	-0.26706	-0.00012024	450.2348566983551	31.308	0.22584	31.308	31.228	31.454	0					9	5	2	0	0	0	0.59411	1	11808	11808		50.025	7.5501	1	76917			18055	8095	11321	11373	18333	18333					0.001578268346634104
IPVGTHEF	8	Unmodified	_IPVGTHEF_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2344970703125	2	450.23471	898.454868	-0.4015	-0.00018077	-0.15681	-7.0601E-05	-0.55831	-0.00025137	450.2346645240717	31.621	1.2119	31.621	31.126	32.338	0					53	24	4	0	0	0	0.4434	1	11668	11668		65.897	13.598	1	3544500			18056	8095	11321	11373	18334	18334					0.001578268346634104
IPVGTNEFTA	10	Unmodified	_IPVGTNEFTA_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENST00000524058.1_1_5:156810283-156816436:+|nuORF;ENST00000522884.5_1_5:156811334-156816436:+|nuORF	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7713012695312	2	524.769114	1047.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.605	1	29.605	29.105	30.105	0								0	0	0	0.062361	1	10592	10592		87.754	2.8388	1				18057	1279	11322	11374	18335	18335					0.001814463437312952
IPVTKGVVP	9	Unmodified	_IPVTKGVVP_					0	0	0		HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant;HCFC2|p.A339Hfs*2|1|0.43|ENSG00000111727|chr12:104082847-104082847|A/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2	HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.29180908203125	2	455.292028	908.569503	0.1244	5.664E-05	-0.52097	-0.0002372	-0.39657	-0.00018056	455.29173047256637	30.907	0.73581	30.907	30.793	31.529	0					30	19	2	0	0	0	0.47038	1	10572	10572		35.618	2.1027	1	198030			18058	2693	11323	11375	18336	18336					0.11156136316617449
IQAAGPAHAGL	11	Unmodified	_IQAAGPAHAGL_					0	0	0		ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1	ENST00000465149.1_1_2:220420747-220435459:-|nuORF	ENST00000465149.1_1_2:220420747-220435459:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2773132324219	2	503.277441	1004.54033	-0.052762	-2.6554E-05	-1.1377	-0.00057258	-1.1905	-0.00059913	503.2763301049725	32.292	0.30737	32.292	32.038	32.345	0					18	13	2	0	0	0	0.61618	1	10420	10420		35.618	1.4457	1	58410			18059	3341	11324	11376	18337	18337					0.03823992020318201
IQAKDMIG	8	Unmodified	_IQAKDMIG_					0	0	0		CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant;ENSG00000071991|ENST00000262150|CDH19;nc|ENSG00000071991|Q9H159-2|CDH19;CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant	CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant	CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.23614501953125	2	438.236396	874.458238	0.2558	0.0001121	-0.44637	-0.00019562	-0.19057	-8.3515E-05	438.2361241339319	32.297	0.12326	32.297	32.233	32.356	0					7	5	2	0	0	0	0.54629	1	10448	10448		55.504	2.1528	1	47245			18060	449	11325	11377	18338	18338					0.015987536170314343
IQALGPLSSAL	11	Unmodified	_IQALGPLSSAL_					0	0	0			REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF	REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.3161010742188	2	535.316232	1068.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.53	1	35.53	35.03	36.03	0								0	0	0	0.37939	1	12023	12023		24.519	4.5224	1		+		18061	14092	11326	11378	18339	18339					0.08634585165850694
IQDSNQYQF	9	Unmodified	_IQDSNQYQF_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.7609252929688	2	571.759278	1141.504	2.0158	0.0011526	-0.94666	-0.00054126	1.0692	0.0006113	572.2601584755622	38.016	0.2438	38.016	37.902	38.145	0					18	8	4	0	0	0	0.07136	1	14883	14883		87.696	21.893	1	222440			18062	3564	11327	11379	18340	18340					-0.06108929667038865
IQDSNQYQF	9	Unmodified	_IQDSNQYQF_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7593994140625	2	571.759278	1141.504	1.64	0.00093768	-0.62496	-0.00035733	1.015	0.00058035	571.7587042447894	37.932	0.20235	37.932	37.837	38.039	0					10	4	3	0	0	0	0.037569	1	14887	14887		101.6	24.827	1	109900			18063	3564	11327	11379	18341	18341					-0.06108929667038865
IQDSNQYQF	9	Unmodified	_IQDSNQYQF_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7593994140625	2	571.759278	1141.504	3.3933	0.0019401	-2.3865	-0.0013645	1.0068	0.00057566	571.7581119958345	37.949	0.24132	37.949	37.869	38.111	0					11	5	3	0	0	0	0.047855	1	14878	14878		96.034	42.682	1	228210			18064	3564	11327	11379	18342	18342					-0.06108929667038865
IQEPEIALK	9	Unmodified	_IQEPEIALK_					0	0	0		SPAG6|p.A403Pfs*2|1|0.33|ENSG00000077327|chr10:22401164-22401164|A/-|frameshift_variant;nc|ENSG00000077327|O75602-2|SPAG6;nc|ENSG00000077327|O75602-5|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6	SPAG6|p.A403Pfs*2|1|0.33|ENSG00000077327|chr10:22401164-22401164|A/-|frameshift_variant	SPAG6|p.A403Pfs*2|1|0.33|ENSG00000077327|chr10:22401164-22401164|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.8031616210938	2	520.802957	1039.59136	0.072929	3.7981E-05	0.13935	7.2574E-05	0.21228	0.00011056	520.8031156380815	27.126	0.25609	27.126	27.037	27.293	0					19	6	4	0	0	0	0.078509	1	9443	9443		85.161	2.4103	1	1946700			18065	1581	11328	11380	18343	18343					0.07314896274488092
IQEVVRELL	9	Unmodified	_IQEVVRELL_					0	0	0		ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.8294067382812	2	549.829506	1097.64446	1.273	0.00069995	-0.545	-0.00029966	0.72803	0.00040029	549.8291204459199	34.948	0.34813	34.948	34.831	35.179	0					44	15	4	0	0	0	0.15163	1	11415	11415		67.494	3.2864	1	1039700			18066	7068	11329	11381	18344	18344					0.0995427405719056
IQFNPPLSEK	10	Unmodified	_IQFNPPLSEK_					0	0	0		nc|ENSG00000165097|Q8NB78-2|KDM1B;KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant;ENSG00000165097|ENST00000650836|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.8190307617188	2	586.819138	1171.62372	0.10307	6.0481E-05	0.48419	0.00028413	0.58726	0.00034461	586.8194044313276	37.067	0.69646	37.067	36.522	37.219	0					33	19	2	0	0	0	0.44971	1	14045	14045		54.722	12.326	1	156140			18067	5757	11330	11382	18345	18345					0.04477683677509958
IQGHPFFRNV	10	Unmodified	_IQGHPFFRNV_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.55267333984375	3	405.552485	1213.63563	0.6527	0.00026471	-0.8156	-0.00033077	-0.1629	-6.6064E-05	405.5521564102389	21.851	2.3579	21.851	21.721	24.079	0					90	47	2	0	0	0	0.58896	1	7179	7179		32.751	0	1	5841700			18068	5575	11331	11383	18346	18346					0.03735345211362073
IQGLSFQLI	9	Unmodified	_IQGLSFQLI_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.80010986328125	2	509.800217	1017.58588	1.3608	0.00069375	-0.34523	-0.000176	1.0156	0.00051775	509.7995926762352	34.676	0.212	34.676	34.572	34.784	0					13	4	4	0	0	0	0.13726	1	13328	13328		45.972	3.5761	1	583660			18069	5161	11332	11384	18347	18347					0.07779217482709555
IQGQAVRK	8	Unmodified	_IQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2742919921875	2	450.274701	898.534849	-0.40118	-0.00018064	-0.38113	-0.00017162	-0.78231	-0.00035226	450.27461850751126	18.135	0.11458	18.135	18.076	18.19	0					6	2	3	0	0	0	0.24425	1	5383	5383		111.65	20.872	1	669590			18070	1941	11333	11385	18348	18348					0.08152313228515595
IQGSRKRR	8	Unmodified	_IQGSRKRR_					0	0	0		ENST00000256079.8_1_12:30848636-30848696:-|nuORF	ENST00000256079.8_1_12:30848636-30848696:-|nuORF	ENST00000256079.8_1_12:30848636-30848696:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.209716796875	3	334.208941	999.604994	1.6259	0.00054339	0.92607	0.0003095	2.552	0.00085288	334.20920891611337	19.533	0.36297	19.533	19.378	19.741	0					16	7	4	0	0	0	0.78142	1	6068	6068		25.574	25.574	1	1572800			18071	8263	11334	11386	18349	18349					0.10517611616990052
IQKFHTTSR	9	Unmodified	_IQKFHTTSR_					0	0	0		ENSG00000111886|ENST00000402938|GABRR2;nc|ENSG00000111886|P28476-2|GABRR2	ENSG00000111886|ENST00000402938|GABRR2	ENSG00000111886|ENST00000402938|GABRR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098083496094	3	373.208607	1116.60399	3.2218	0.0012024	-0.074132	-2.7667E-05	3.1477	0.0011748	373.2086375084223	27.771	4.6366	27.771	26.868	31.505	0					191	93	3	0	0	0	0.47038	1	9761	9761		28.081	0	1	693210			18072	2706	11335	11387	18350	18350					0.05035352457389308
IQLLGGVS	8	Unmodified	_IQLLGGVS_					0	0	0		ENST00000352410.8_1_15:75190564-75190915:+|nuORF	ENST00000352410.8_1_15:75190564-75190915:+|nuORF	ENST00000352410.8_1_15:75190564-75190915:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.73956298828125	2	393.739628	785.464704	-0.66188	-0.00026061	0.46384	0.00018263	-0.19803	-7.7974E-05	393.73986505417344	30.675	0.21956	30.675	30.578	30.797	0					7	4	2	0	0	0	0.60719	1	11405	11405		47.916	0	1	82219			18073	8775	11336	11388	18351	18351					0.0633901484004582
IQNCLILNQ	9	Unmodified	_IQNCLILNQ_					0	0	0			REV__MAST1|p.R413C|1|0.28|ENSG00000105613|chr19:12858610-12858610|C/T|missense_variant	REV__MAST1|p.R413C|1|0.28|ENSG00000105613|chr19:12858610-12858610|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2888793945312	2	529.786784	1057.55902	0.40659	0.00021541	-2.5346	-0.0013428	-2.128	-0.0011274	529.786853485029	26.163	0.24929	26.163	25.989	26.238	0					19	8	3	0	0	0	0.37197	1	8136	8136		44.117	0	1	135510	+		18074	20867	11337	11389	18352	18352					0.03253785599872572
IQNCLILNQ	9	Unmodified	_IQNCLILNQ_					0	0	0			REV__MAST1|p.R413C|1|0.28|ENSG00000105613|chr19:12858610-12858610|C/T|missense_variant	REV__MAST1|p.R413C|1|0.28|ENSG00000105613|chr19:12858610-12858610|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.78662109375	2	529.786784	1057.55902	-1.1939	-0.00063249	0.63116	0.00033438	-0.5627	-0.00029811	529.7877744808176	26.23	0.49314	26.23	25.933	26.426	0					31	11	4	0	0	0	0.099922	1	8351	8351		79.451	2.1334	1	578990	+		18075	20867	11337	11389	18353	18353					0.03253785599872572
IQNDRQLQY	9	Unmodified	_IQNDRQLQY_					0	0	0		TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant;ENSG00000100109|ENST00000407690|TFIP11	TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant	TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.3021850585938	2	589.301644	1176.58874	-0.43466	-0.00025614	0.23122	0.00013626	-0.20343	-0.00011988	589.3020139291089	26.85	0.20067	26.85	26.794	26.995	0					13	7	3	0	0	0	0.21263	1	8489	8489		60.118	7.8191	1	102110			18076	1974	11338	11390	18354	18354					0.0075044086956950196
IQNDRQLQY	9	Unmodified	_IQNDRQLQY_					0	0	0		TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant;ENSG00000100109|ENST00000407690|TFIP11	TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant	TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.3014526367188	2	589.301644	1176.58874	1.4719	0.00086739	-2.5976	-0.0015307	-1.1257	-0.00066335	589.300360767346	27.11	0.36466	27.11	27.008	27.372	0					15	7	3	0	0	0	0.1424	1	9799	9799		69.628	5.4204	1	652680			18077	1974	11338	11390	18355	18355					0.0075044086956950196
IQNDRQLQY	9	Unmodified	_IQNDRQLQY_					0	0	0		TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant;ENSG00000100109|ENST00000407690|TFIP11	TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant	TFIP11|p.N538Tfs*75|1|0.26|ENSG00000100109|chr22:26496309-26496309|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.3013916015625	2	589.301644	1176.58874	-1.7622	-0.0010385	1.3794	0.0008129	-0.38277	-0.00022557	589.3025570902943	26.933	0.1236	26.933	26.852	26.976	0					5	3	2	0	0	0	0.16806	1	8749	8749		65.465	32.653	1	144730			18078	1974	11338	11390	18356	18356					0.0075044086956950196
IQNGGLFIA	9	Unmodified	_IQNGGLFIA_					0	0	0		ENSG00000123453|ENST00000439388|SARDH	ENSG00000123453|ENST00000439388|SARDH	ENSG00000123453|ENST00000439388|SARDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.76336669921875	2	466.763635	931.512717	-0.66394	-0.0003099	0.28316	0.00013217	-0.38078	-0.00017773	466.7638155499941	27.705	0.18359	27.705	27.616	27.799	0					6	4	2	0	0	0	0.27781	1	9113	9113		52.299	5.5327	1	113490			18079	3321	11339	11391	18357	18357					0.044220887600772585
IQNGLILFQY	10	Unmodified	_IQNGLILFQY_					0	0	0		ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.835693359375	2	604.837331	1207.66011	-1.9142	-0.0011578	-1.2878	-0.0007789	-3.202	-0.0019367	604.836443279119	36.016	0.208	36.016	35.925	36.133	0					17	7	3	0	0	0	0.48965	1	12854	12854		42.396	7.2441	1	165690			18080	8894	11340	11392	18358	18358					0.06458560574242256
IQNGRQDV	8	Unmodified	_IQNGRQDV_					0	0	0			REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.24542236328125	2	465.243598	928.472643	2.6162	0.0012172	0.91702	0.00042664	3.5332	0.0016438	465.2441440432515	27.986	0.268	27.986	27.926	28.194	0					14	5	4	0	0	0	0.29152	1	10094	10094		85.359	19.556	1	2004800	+		18081	17005	11341	11393	18359	18359					0.0055454208951459805
IQNNHVAR	8	Unmodified	_IQNNHVAR_					0	0	0		ENST00000605357.5_1_7:20368428-20368995:-|nuORF	ENST00000605357.5_1_7:20368428-20368995:-|nuORF	ENST00000605357.5_1_7:20368428-20368995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.26068115234375	2	476.259582	950.504612	-0.11878	-5.6568E-05	2.9081	0.001385	2.7893	0.0013284	476.2608046748828	29.121	0.328	29.121	29.022	29.35	0					11	7	3	0	0	0	0.72381	1	10844	10844		30.504	1.3541	1	226650			18082	11071	11342	11394	18360	18360					0.027379545633152702
IQNNIALK	8	Unmodified	_IQNNIALK_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2770690917969	2	457.276909	912.539266	0.045001	2.0578E-05	-0.77924	-0.00035633	-0.73423	-0.00033575	457.2766690074119	34.73	0.087376	34.73	34.686	34.773	0					6	4	2	0	0	0	0.41952	1	11372	11372		68.485	8.1907	1	41884			18083	1008	11343	11395	18361	18361					0.07949777651413115
IQNPTMINK	9	Unmodified	_IQNPTMINK_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7875366210938	2	529.786784	1057.55902	0.11466	6.0746E-05	-0.8562	-0.0004536	-0.74153	-0.00039286	529.7871506339759	26.404	0.56155	26.404	26.154	26.715	0					50	13	5	0	0	0	0.02429	1	9051	9051		114.89	3.2463	1	3138000			18084	5976	11344	11396	18362	18362					0.03253785599872572
IQNTWSYTQQI	11	Unmodified	_IQNTWSYTQQI_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	691.34033203125	2	691.340966	1380.66738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.29	1	40.29	39.79	40.79	0								0	0	0	0.45674	1	14325	14325		14.865	5.682	1		+		18085	14863	11345	11397	18363	18363					-0.007727516160002779
IQNWTLGAVG	10	Unmodified	_IQNWTLGAVG_					0	0	0		nc|ENSG00000172500|O43427|FIBP;ENST00000525765.5_1_11:65652578-65653076:-|nuORF;ENST00000532679.5_1_11:65652935-65653190:-|nuORF	nc|ENSG00000172500|O43427|FIBP	nc|ENSG00000172500|O43427|FIBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7867431640625	2	529.785099	1057.55564	0.28679	0.00015194	0.65837	0.00034879	0.94516	0.00050073	530.2864509951253	26.431	0.45925	26.431	26.101	26.56	0					21	9	3	0	0	0	0.28036	1	9387	9387		69.628	0.8408	1	895660			18086	11647	11346	11398	18364	18364					0.029168588175252808
IQPINHTTLQ	10	Unmodified	_IQPINHTTLQ_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.8228149414062	2	582.822212	1163.62987	1.3801	0.00080433	-1.1663	-0.00067975	0.21376	0.00012458	582.8215548826678	32.559	0.39695	32.559	32.488	32.885	0					20	10	3	0	0	0	0.46128	1	12380	12380		49.536	1.5765	1	507610			18087	4690	11347	11399	18365	18365					0.054602019090452814
IQPPWAAPT	9	Unmodified	_IQPPWAAPT_					0	0	0			REV__ENST00000566889.5_1_16:89865039-89865339:-|nuORF	REV__ENST00000566889.5_1_16:89865039-89865339:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.76373291015625	2	490.763635	979.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.841	1	17.841	17.341	18.341	0								0	0	0	0.3304	1	5371	5371		29.15	0	1		+		18088	20350	11348	11400	18366	18366					0.02214088760069899
IQQPVKFRVYS	11	Unmodified	_IQQPVKFRVYS_					0	0	0			REV__ENSG00000163686|ENST00000478253|ABHD6	REV__ENSG00000163686|ENST00000478253|ABHD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	682.8858032226562	2	682.887887	1363.76122	1.4099	0.00096278	-3.4064	-0.0023262	-1.9965	-0.0013634	682.8845306014724	25.25	0.13209	25.25	25.18	25.312	0					7	4	2	0	0	0	0.36165	1	7835	7835		54.722	23.193	1	85816	+		18089	15906	11349	11401	18367	18367					0.09389012276938047
IQSFKLPAY	9	Unmodified	_IQSFKLPAY_					0	0	0		TLR4|p.E169A|1|0.41|ENSG00000136869|chr9:117712634-117712634|A/C|missense_variant	TLR4|p.E169A|1|0.41|ENSG00000136869|chr9:117712634-117712634|A/C|missense_variant	TLR4|p.E169A|1|0.41|ENSG00000136869|chr9:117712634-117712634|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.2037048339844	3	356.20257	1065.58588	3.0652	0.0010918	-0.14733	-5.248E-05	2.9178	0.0010393	356.202660148863	22.164	0.56719	22.164	22.054	22.622	0					23	11	3	0	0	0	0.56424	1	7343	7343		32.751	14.219	1	989430			18090	22537	11350	11402	18368	18368					0.055712174827021954
IQSGEQPYK	9	Unmodified	_IQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2666625976562	2	525.266739	1048.51892	1.8955	0.00099565	-1.4811	-0.00077796	0.41444	0.00021769	525.2659881053424	19.877	0.2316	19.877	19.706	19.937	0					11	5	3	0	0	0	0.22837	1	6065	6065		58.23	0.41864	1	408930			18091	6105	11351	11403	18369	18369					-0.00339437799038933
IQSTVMLDK	9	Unmodified	_IQSTVMLDK_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7806396484375	2	517.781167	1033.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.437	1	28.437	27.937	28.937	0								0	0	0	0.15687	1	8885	8885		58.23	5.2932	1				18092	2905	11352	11404	18370	18370					0.032349635057244086
IQSTVMLDK	9	Unmodified	_IQSTVMLDK_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7818603515625	2	517.781167	1033.54778	1.8721	0.00096936	-1.0457	-0.00054145	0.82643	0.00042791	517.780601164883	28.71	0.14344	28.71	28.614	28.758	0					6	3	2	0	0	0	0.22823	1	10165	10165		58.246	8.8047	1	107050			18093	2905	11352	11404	18371	18371					0.032349635057244086
IQSTVMLDK	9	Unmodified	_IQSTVMLDK_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7813110351562	2	517.781167	1033.54778	1.3141	0.0006804	-1.178	-0.00060994	0.13608	7.0459E-05	517.7808068026092	28.693	0.17725	28.693	28.603	28.78	0					11	4	3	0	0	0	0.037712	1	10159	10159		101.46	18.709	1	526750			18094	2905	11352	11404	18372	18372					0.032349635057244086
IQSTVMLDK	9	Unmodified	_IQSTVMLDK_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7810668945312	2	517.781167	1033.54778	1.0197	0.00052796	-0.95393	-0.00049392	0.065728	3.4033E-05	517.7808214040109	28.687	0.2141	28.687	28.581	28.795	0					10	4	3	0	0	0	0.15558	1	10553	10553		66.962	10.241	1	460870			18095	2905	11352	11404	18373	18373					0.032349635057244086
IQSTVMLDK	9	Unmodified	_IQSTVMLDK_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7810668945312	2	517.781167	1033.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.643	1	28.643	28.143	29.143	0								0	0	0	0.073134	1	10402	10402		79.489	7.6116	1				18096	2905	11352	11404	18374	18374					0.032349635057244086
IQTESTRK	8	Unmodified	_IQTESTRK_					0	0	0			REV__ENST00000394334.6_1_X:131203666-131205170:+|nuORF	REV__ENST00000394334.6_1_X:131203666-131205170:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7674560546875	2	481.766906	961.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.287	1	13.287	12.787	13.787	0								0	0	0	1.7419	1	3200	3200		42.396	5.237	1		+		18097	18862	11353	11405	18375	18375					0.03695981920805025
IQTFPNQL	8	Unmodified	_IQTFPNQL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7624206542969	2	480.761092	959.507631	2.3367	0.0011234	0.026866	1.2916E-05	2.3635	0.0011363	480.76139033786495	34.855	0.51236	34.855	34.7	35.213	0					35	10	6	0	0	0	0.37378	1	13387	13387		73.975	73.975	1	4705000			18098	3193	11354	11406	18376	18376					0.026257848974637454
IQTMGIKK	8	Unmodified	_IQTMGIKK_					0	0	0			REV__tr|U7T4Y3|U7T4Y3_FUSNULargeribosomalsubunitproteinuL3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplCPE=3SV=1	REV__tr|U7T4Y3|U7T4Y3_FUSNULargeribosomalsubunitproteinuL3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7747497558594	2	459.775688	917.536823	-0.67412	-0.00030994	-0.81471	-0.00037459	-1.4888	-0.00068453	459.77531264535907	20.967	0.50056	20.967	20.51	21.01	0					14	11	2	0	0	0	0.35045	1	6594	6594		76.774	0	1	748650	+		18099	22169	11355	11407	18377	18377					0.07475605922115847
IQTNELTPK	9	Unmodified	_IQTNELTPK_					0	0	0			REV__ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant	REV__ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7890014648438	2	522.290214	1042.56587	0.80846	0.00042225	-2.119	-0.0011067	-1.3106	-0.00068449	522.2901267237233	26.477	0.24299	26.477	26.38	26.623	0					19	8	3	0	0	0	0.085655	1	8078	8078		82.75	7.7072	1	157990	+		18100	20756	11356	11408	18378	18378					0.04629421752065355
IQYANISQI	9	Unmodified	_IQYANISQI_					0	0	0		ADAD1|p.K208N|1|0.34|ENSG00000164113|chr4:122396277-122396277|G/T|missense_variant	ADAD1|p.K208N|1|0.34|ENSG00000164113|chr4:122396277-122396277|G/T|missense_variant	ADAD1|p.K208N|1|0.34|ENSG00000164113|chr4:122396277-122396277|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2871704101562	2	525.284931	1048.55531	3.4428	0.0018084	0.30883	0.00016222	3.7516	0.0019707	525.2850858106082	26.578	0.2702	26.578	26.469	26.739	0					10	5	2	0	0	0	0.029571	1	9392	9392		104.06	10.861	1	2571000			18101	44	11357	11409	18379	18379					0.03297439097673305
IQYKPSIFDN	10	Unmodified	_IQYKPSIFDN_					0	0	0			REV__tr|U7SV33|U7SV33_FUSNUGlutathionereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01112PE=4SV=1	REV__tr|U7SV33|U7SV33_FUSNUGlutathionereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01112PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.8177490234375	2	612.816596	1223.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.584	1	43.584	43.084	44.084	0								0	0	0	0.41767	1	17445	17445		9.1829	0	1		+		18102	21986	11358	11410	18380	18380					0.01577379814921187
IRACITML	8	Carbamidomethyl (C)	_IRAC(Carbamidomethyl (C))ITML_	IRAC(1)ITML		IRAC(66)ITML		0	1	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.26837158203125	2	489.267173	976.519793	2.6206	0.0012822	0.24697	0.00012084	2.8676	0.001403	489.2672629148442	29.25	0.56403	29.25	28.877	29.441	0					21	11	2	0	0	0	0.44433	1	10698	10698		65.803	10.299	1	680850	+		18103	14901	11359	11411	18381	18381	551				0.03059362044655245
IRATRRGLR	9	Unmodified	_IRATRRGLR_					0	0	0		ENST00000389413.7_3_7:157332368-157332530:-|nuORF	ENST00000389413.7_3_7:157332368-157332530:-|nuORF	ENST00000389413.7_3_7:157332368-157332530:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.9046630859375	3	366.903741	1097.68939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.768	1	13.768	13.268	14.268	0								0	0	0	0.36609	1	2735	2735		21.686	0	1				18104	9134	11360	11412	18382	18382					0.1444556243372972
IRCKAAIL	8	Unmodified	_IRCKAAIL_					0	0	0		nc|ENSG00000172955|P28332|ADH6;ENSG00000172955|ENST00000394899|ADH6	nc|ENSG00000172955|P28332|ADH6	nc|ENSG00000172955|P28332|ADH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2767028808594	2	444.278398	886.542243	-1.1582	-0.00051457	-1.7097	-0.00075959	-2.8679	-0.0012742	444.27791867471325	24.122	0.36023	24.122	23.96	24.32	0					14	11	2	0	0	0	0.64096	1	7347	7347		42.474	0	1	238950			18105	6399	11361	11413	18383	18383					0.0944332950456328
IRDNSLKQL	9	Unmodified	_IRDNSLKQL_					0	0	0			REV__ENSG00000135744|ENST00000366667|AGT	REV__ENSG00000135744|ENST00000366667|AGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8189697265625	2	543.81693	1085.61931	3.6566	0.0019885	0.39438	0.00021447	4.051	0.002203	543.817131739307	27.484	0.56933	27.484	27.373	27.943	0					30	11	4	0	0	0	0.032383	1	9833	9833		90.37	5.4543	1	7196700	+		18106	14817	11362	11414	18384	18384					0.07992219254606425
IREPRTTAL	9	Unmodified	_IREPRTTAL_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP;TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant;ENSG00000182521|ENST00000247219|TBPL2	nc|ENSG00000112592|P20226-2|TBP;TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant	TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.8139038085938	2	528.811648	1055.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.202	1	28.202	27.702	28.702	0								0	0	0	0.28996	1	8783	8783		37.159	1.5408	1				18107	2750;6901	11363	11415	18385	18385					0.08316236600171578
IRESETKK	8	Unmodified	_IRESETKK_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.78387451171875	2	495.782556	989.550559	0.049639	2.461E-05	0.95372	0.00047284	1.0034	0.00049745	495.78319316451797	18.347	0.072397	18.347	18.311	18.383	0					6	3	2	0	0	0	0.77246	1	4552	4552		24.203	2.2429	1	35629			18108	5144	11364	11416	18386	18386					0.055365549549037496
IRGCDKSY	8	Unmodified	_IRGCDKSY_					0	0	0		ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2273254394531	2	471.229102	940.443651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.193	1	25.193	24.693	25.693	0								0	0	0	1.7419	1	8912	8912		42.396	3.59	1				18109	4354	11365	11417	18387	18387					-0.028953185311252128
IRHGGKGG	8	Unmodified	_IRHGGKGG_					0	0	0			REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2252502441406	2	391.225011	780.435469	0.87839	0.00034365	-0.41427	-0.00016207	0.46412	0.00018157	391.22479503018076	43.697	1.5441	43.697	43.319	44.863	0					126	89	3	0	0	0	0.7914	1	16653	16653		14.664	5.1935	1	305500	+		18110	22146	11366	11418	18388	18388					0.036469153344341976
IRHGGKGG	8	Unmodified	_IRHGGKGG_					0	0	0			REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2251281738281	2	391.225011	780.435469	0.33996	0.000133	-0.20136	-7.8776E-05	0.13861	5.4227E-05	391.2247871165222	42.351	1.3193	42.351	41.916	43.235	0					89	64	3	0	0	0	0.7914	1	16823	16823		14.664	14.664	1	207150	+		18111	22146	11366	11418	18389	18389					0.036469153344341976
IRIGSTPVL	9	Unmodified	_IRIGSTPVL_					0	0	0		ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.29937744140625	2	478.300384	954.586216	0.86189	0.00041224	-1.4498	-0.00069344	-0.58791	-0.0002812	478.29948047552404	42.528	0.19123	42.528	42.443	42.634	0					7	5	2	0	0	0	0.53083	1	16983	16983		29.15	1.2673	1	59835			18112	4388	11367	11419	18390	18390					0.10710637202555517
IRISLRNQ	8	Unmodified	_IRISLRNQ_					0	0	0		ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	ENSG00000157680|ENST00000614521|DGKI	ENSG00000157680|ENST00000614521|DGKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.3064270019531	2	500.306532	998.598512	0.65865	0.00032953	-1.1642	-0.00058245	-0.50554	-0.00025293	500.30619474791996	13.519	0.14029	13.519	13.456	13.596	0					5	4	2	0	0	0	0.68432	1	3104	3104		35.618	2.8059	1	129410			18113	5228	11368	11420	18391	18391					0.09915673665602753
IRKSDINQ	8	Unmodified	_IRKSDINQ_					0	0	0		tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.27471923828125	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.37	1	16.37	15.87	16.87	0								0	0	0	1.7419	1	4518	4518		66.429	5.4573	1				18114	22663	11369	11421	18392	18392					0.04787688157705361
IRKSSMGG	8	Unmodified	_IRKSSMGG_					0	0	0			REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF	REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.2272644042969	2	418.226362	834.438172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.828	1	50.828	50.328	51.328	0								0	0	0	1.7419	1	19981	19981		20.482	2.1574	1		+		18115	14178	11370	11422	18393	18393					0.014330026770721815
IRLSRDEA	8	Unmodified	_IRLSRDEA_					0	0	0			REV__ENSG00000137055|ENST00000397292|PLAA	REV__ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2669677734375	2	480.267073	958.519593	-0.49873	-0.00023952	0.52083	0.00025014	0.022096	1.0612E-05	480.2674216752622	27.447	0.16804	27.447	27.338	27.506	0					5	3	2	0	0	0	0.74405	1	9957	9957		27.882	1.0861	1	107130	+		18116	14899	11371	11423	18394	18394					0.03867401640661683
IRMMLLKK	8	Unmodified	_IRMMLLKK_					0	0	0			REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF	REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.8248901367188	2	516.824658	1031.63476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.644	1	11.644	11.144	12.144	0								0	0	0	1.7419	1	2303	2303		33.516	5.2613	1		+		18117	18473	11372	11424	18395	18395					0.12021091246447213
IRMSHVIC	8	Unmodified	_IRMSHVIC_					0	0	0			REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant	REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7528991699219	2	479.75169	957.488827	2.297	0.001102	0.2909	0.00013956	2.5879	0.0012416	479.75191830089153	36.305	0.21078	36.305	36.2	36.411	0					7	4	2	0	0	0	0.60719	1	14107	14107		47.916	5.0513	1	963030	+		18118	16118	11373	11425	18396	18396					0.008382087304084962
IRNLDENYY	9	Unmodified	_IRNLDENYY_					0	0	0		COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant;COL5A1|p.P870Qfs*204|1|0.5|ENSG00000130635|chr9:134786009-134786009|C/-|frameshift_variant;COL5A1|p.K933Rfs*141|1|0.32|ENSG00000130635|chr9:134795309-134795309|C/-|frameshift_variant;COL5A1|p.G997Afs*77|1|0.22|ENSG00000130635|chr9:134801983-134801983|C/-|frameshift_variant;COL5A1|p.G997Rfs*17|1|0.4|ENSG00000130635|chr9:134801982-134801983|-/C|frameshift_variant;COL5A1|p.D1172Tfs*104|1|0.22|ENSG00000130635|chr9:134810290-134810290|G/-|frameshift_variant;COL5A1|p.D418N|1|0.28|ENSG00000130635|chr9:134731583-134731583|G/A|missense_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;COL5A1|p.G1351Efs*137|2|0.4|ENSG00000130635|chr9:134815605-134815605|C/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2906494140625	2	600.288202	1198.56185	3.1211	0.0018736	0.435	0.00026113	3.5562	0.0021347	600.288388814637	42.762	0.95949	42.762	42.398	43.357	0					59	29	3	0	0	0	0.50858	1	17279	17279		31.53	2.3803	1	179530			18119	612;3654;611	11374	11426	18397	18397					-0.029486677416116436
IRPIRSGG	8	Unmodified	_IRPIRSGG_					0	0	0			REV__ENST00000237536.8_2_20:35410688-35410808:-|nuORF	REV__ENST00000237536.8_2_20:35410688-35410808:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.26153564453125	2	428.261594	854.508634	-0.6503	-0.0002785	0.29767	0.00012748	-0.35263	-0.00015102	428.26161508709373	51.969	0.39687	51.969	51.87	52.267	0					58	23	3	0	0	0	0.79882	1	18484	18484		19.36	5.5846	1	1188400	+		18120	17925	11375	11427	18398	18398					0.07556044057048439
IRPLIAEG	8	Unmodified	_IRPLIAEG_					0	0	0			REV__CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	REV__CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.76580810546875	2	434.766178	867.517802	-0.43508	-0.00018916	0.11843	5.149E-05	-0.31665	-0.00013767	434.76622077152183	40.582	0.17046	40.582	40.471	40.642	0					12	6	2	0	0	0	0.7126	1	15447	15447		31.955	1.4512	1	116930	+		18121	12448	11376	11428	18399	18399					0.07874392622704818
IRPWTEETF	9	Unmodified	_IRPWTEETF_					0	0	0			REV__ENTPD3|p.Q445R|1|0.33|ENSG00000168032|chr3:40423944-40423944|A/G|missense_variant	REV__ENTPD3|p.Q445R|1|0.33|ENSG00000168032|chr3:40423944-40423944|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.5328369140625	3	393.532868	1177.57677	0.89098	0.00035063	-0.81066	-0.00031902	0.080322	3.1609E-05	393.532608925947	28.213	0.33619	28.213	28.121	28.458	0					19	8	4	0	0	0	0.4966	1	9940	9940		32.812	1.2826	1	736260	+		18122	20638	11377	11429	18400	18400					-0.004911758736398042
IRRESYTK	8	Unmodified	_IRRESYTK_					0	0	0		ENST00000409170.3_3_X:100650353-100667050:+|nuORF	ENST00000409170.3_3_X:100650353-100667050:+|nuORF	ENST00000409170.3_3_X:100650353-100667050:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7969360351562	2	526.795998	1051.57744	0.10245	5.3972E-05	1.3949	0.00073482	1.4973	0.0007888	526.796718832885	31.432	0.41645	31.432	31.319	31.735	0					19	10	4	0	0	0	0.3961	1	11439	11439		71.296	2.5089	1	608140			18123	9293	11378	11430	18401	18401					0.05371663566074858
IRSCLTPRMS	10	Unmodified	_IRSCLTPRMS_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-3|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-3|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.3060302734375	2	582.304818	1162.59508	1.1464	0.00066755	0.57132	0.00033268	1.7177	0.0010002	582.3051947075547	30.832	0.22385	30.832	30.742	30.965	0					13	5	3	0	0	0	0.71938	1	11556	11556		19.104	2.6304	1	305200	+		18124	15083	11379	11431	18402	18402					0.020289195050736453
IRSQAHELKAL	11	Unmodified	_IRSQAHELKAL_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	633.369140625	2	633.369861	1264.72517	0.26432	0.00016741	-0.089577	-5.6735E-05	0.17474	0.00011068	633.3696594799795	54.365	0.33557	54.365	54.134	54.469	0					34	21	2	0	0	0	0.69524	1	16464	16464		28.081	3.5623	1	107420	+		18125	21045	11380	11432	18403	18403					0.1033955510006308
IRTNLQEK	8	Unmodified	_IRTNLQEK_					0	0	0			REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.73248291015625	2	501.290548	1000.56654	0.14702	7.37E-05	0.4494	0.00022528	0.59642	0.00029898	501.29090268936204	15.308	0.69102	15.308	15.13	15.821	0					61	24	5	0	0	0	0.66989	1	3400	3400		35.618	3.6634	1	39750000	+		18126	12063	11381	11433	18404	18404					0.06628261191792717
IRTTSSLSIIS	11	Unmodified	_IRTTSSLSIIS_					0	0	0		DMD|p.L823Pfs*27|1|0.06|ENSG00000198947|chrX:32491431-32491432|-/AAATTTGTAAG|frameshift_variant	DMD|p.L823Pfs*27|1|0.06|ENSG00000198947|chrX:32491431-32491432|-/AAATTTGTAAG|frameshift_variant	DMD|p.L823Pfs*27|1|0.06|ENSG00000198947|chrX:32491431-32491432|-/AAATTTGTAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.3436889648438	2	589.342978	1176.6714	0.54082	0.00031873	0.036494	2.1508E-05	0.57732	0.00034024	589.3428487752604	52.815	0.7683	52.815	52.471	53.24	0					88	47	3	0	0	0	0.74306	1	15729	15729		23.523	23.523	1	237120			18127	804	11382	11434	18405	18405					0.09013337877718186
IRVGHRAE	8	Unmodified	_IRVGHRAE_					0	0	0			REV__nc|ENSG00000129219|O14939-3|PLD2	REV__nc|ENSG00000129219|O14939-3|PLD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.27020263671875	2	469.26995	936.525347	0.020057	9.4124E-06	2.8528	0.0013387	2.8728	0.0013481	469.2712568222261	33.565	0.13234	33.565	33.493	33.625	0					7	4	2	0	0	0	0.68432	1	10926	10926		35.618	2.1027	1	85811	+		18128	14542	11383	11435	18406	18406					0.05454544942972461
IRWICQKEL	9	Unmodified	_IRWICQKEL_					0	0	0		ENSG00000111796|ENST00000229402|KLRB1	ENSG00000111796|ENST00000229402|KLRB1	ENSG00000111796|ENST00000229402|KLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.8331909179688	2	594.831526	1187.6485	-0.54924	-0.0003267	3.7845	0.0022512	3.2353	0.0019245	594.8341324578795	13.249	0.055269	13.249	13.202	13.258	0					4	2	2	0	0	0	0.36892	1	2714	2714		29.15	1.2673	1	46127			18129	2699	11384	11436	18407	18407					0.06218040279259185
IRYSVWEEI	9	Unmodified	_IRYSVWEEI_					0	0	0		PCDHGA2|p.R36W|1|0.27|ENSG00000081853|chr5:141339077-141339077|C/T|missense_variant	PCDHGA2|p.R36W|1|0.27|ENSG00000081853|chr5:141339077-141339077|C/T|missense_variant	PCDHGA2|p.R36W|1|0.27|ENSG00000081853|chr5:141339077-141339077|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.8778991699219	3	398.876634	1193.60807	3.1578	0.0012596	-0.77675	-0.00030983	2.381	0.00094974	398.876506433321	26.829	0.46519	26.829	26.722	27.187	0					27	9	4	0	0	0	0.41113	1	9542	9542		40.778	1.5253	1	1382100			18130	11909	11385	11437	18408	18408					0.0190139716048634
ISAAFNIV	8	Unmodified	_ISAAFNIV_					0	0	0		ENSG00000163393|ENST00000369503|SLC22A15	ENSG00000163393|ENST00000369503|SLC22A15	ENSG00000163393|ENST00000369503|SLC22A15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.7393798828125	2	417.739628	833.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.5	1	34.5	34	35	0								0	0	0	1.7419	1	13303	13303		38.806	0	1				18131	5551	11386	11438	18409	18409					0.041310148400384605
ISAAKEGQAL	10	Unmodified	_ISAAKEGQAL_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.27874755859375	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.663	1	40.663	40.163	41.163	0								0	0	0	0.2634	1	15506	15506		56.434	6.9922	1				18132	6942	11387	11439	18410	18410					0.04585152580614249
ISAASMTQTA	10	Unmodified	_ISAASMTQTA_					0	0	0			REV__ENST00000595618.5_2_19:17273217-17283270:+|nuORF	REV__ENST00000595618.5_2_19:17273217-17283270:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7375793457031	2	490.739499	979.464446	-2.7622	-0.0013555	-0.97687	-0.00047939	-3.7391	-0.0018349	490.73890129166006	21.754	0.24248	21.754	21.657	21.9	0					9	5	2	0	0	0	0.70877	1	6374	6374		20.947	0	1	169200	+		18133	20559	11388	11440	18411	18411					-0.0261077294212555
ISADGSKLD	9	Unmodified	_ISADGSKLD_					0	0	0			REV__nc|ENSG00000154639|P78310-4|CXADR	REV__nc|ENSG00000154639|P78310-4|CXADR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2324523925781	2	453.232364	904.450176	-0.42907	-0.00019447	-0.048533	-2.1997E-05	-0.47761	-0.00021647	453.23284999062696	19.551	0.36112	19.551	19.396	19.758	0					17	7	3	0	0	0	0.16002	1	6211	6211		66.429	0.96389	1	309820	+		18134	12655	11389	11441	18412	18412					-0.005871020987683551
ISADKKDL	8	Unmodified	_ISADKKDL_					0	0	0			REV__MPZL1|p.I122V|1|0.43|ENSG00000197965|chr1:167772380-167772380|A/G|missense_variant	REV__MPZL1|p.I122V|1|0.43|ENSG00000197965|chr1:167772380-167772380|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2529602050781	2	445.2531	888.491647	0.18912	8.4204E-05	-0.21004	-9.352E-05	-0.020922	-9.3158E-06	445.25293891287043	25.208	0.28868	25.208	25.023	25.312	0					13	8	2	0	0	0	0.53424	1	7563	7563		56.721	12.604	1	88842	+		18135	17371	11390	11442	18413	18413					0.04294078660575451
ISAETLNVI	9	Unmodified	_ISAETLNVI_					0	0	0			REV__PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	REV__PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2752990722656	2	480.274032	958.533512	0.67245	0.00032296	2.6355	0.0012658	3.308	0.0015887	480.2749823022348	35.068	0.18887	35.068	34.959	35.148	0					8	5	2	0	0	0	0.063823	1	13570	13570		90.37	8.1293	1	231380	+		18136	16389	11391	11443	18414	18414					0.052586343491157095
ISAGHQLLL	9	Unmodified	_ISAGHQLLL_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2844543457031	2	476.284734	950.554916	-1.5274	-0.00072747	0.88181	0.00041999	-0.64558	-0.00030748	476.2850993684312	25.592	0.2015	25.592	25.499	25.701	0					14	6	3	0	0	0	0.1115	1	7971	7971		76.774	0	1	289780	+		18137	13756	11392	11444	18415	18415					0.07766064168481535
ISAGIEKGQ	9	Unmodified	_ISAGIEKGQ_					0	0	0		ENST00000524043.1_1_2:190615306-190618806:-|nuORF	ENST00000524043.1_1_2:190615306-190618806:-|nuORF	ENST00000524043.1_1_2:190615306-190618806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7506103515625	2	451.750724	901.486896	-0.11081	-5.0059E-05	-0.42961	-0.00019408	-0.54043	-0.00024414	451.7505318808486	15.987	0.16673	15.987	15.88	16.047	0					6	3	2	0	0	0	0.28897	1	4471	4471		51.193	3.5354	1	591420			18138	10339	11393	11445	18416	18416					0.032211945178119095
ISAGYKRII	9	Unmodified	_ISAGYKRII_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.80792236328125	2	510.813659	1019.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.681	1	27.681	27.181	28.181	0								0	0	0	0.23111	1	10056	10056		39.253	5.0803	1		+		18139	22139	11394	11446	18417	18417					0.10374326093915442
ISAIIKSYS	9	Unmodified	_ISAIIKSYS_					0	0	0			REV__OR7A5|p.S223A|1|0.36|ENSG00000188269|chr19:14827575-14827575|A/C|missense_variant	REV__OR7A5|p.S223A|1|0.36|ENSG00000188269|chr19:14827575-14827575|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2830505371094	2	491.2844	980.554247	-2.7182	-0.0013354	-0.13113	-6.442E-05	-2.8493	-0.0013998	491.28437815374366	14.712	0.9402	14.712	14.595	15.535	0					67	36	3	0	0	0	0.20551	1	3139	3139		60.972	2.19	1	601790	+		18140	21324	11395	11447	18418	18418					0.06319224728758854
ISAKAATCFAE	11	Unmodified	_ISAKAATCFAE_					0	0	0		ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.1863098144531	3	371.186592	1110.53795	0.77742	0.00028857	-1.7187	-0.00063796	-0.9413	-0.0003494	371.18598016729123	18.993	0.18969	18.993	18.865	19.055	0					12	5	3	0	0	0	0.55968	1	5637	5637		39.873	3.5555	1	371750			18141	3085	11396	11448	18419	18419					-0.01290224499643955
ISAKVFIDK	9	Unmodified	_ISAKVFIDK_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000048740|O95319-5|CELF2	nc|ENSG00000048740|O95319-5|CELF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7403259277344	2	510.808042	1019.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.111	1	38.111	37.611	38.611	0								0	0	0	0.11736	1	14940	14940		67.494	5.8024	1				18142	1233	11397	11449	18420	18420					0.09251503999757915
ISALGDKSK	9	Unmodified	_ISALGDKSK_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant;KIF21A|p.S524Lfs*15|1|0.26|ENSG00000139116|chr12:39351880-39351880|A/-|frameshift_variant;KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant;KIF21A|p.N748Ifs*9|1|0.3|ENSG00000139116|chr12:39340232-39340232|T/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7662048339844	2	459.766374	917.518196	0.8815	0.00040528	0.087138	4.0063E-05	0.96864	0.00044535	459.7656953151723	15.055	0.21931	15.055	14.894	15.113	0					11	4	3	0	0	0	0.56424	1	3900	3900		25.574	1.0549	1	469490			18143	4303	11398	11450	18421	18421					0.056137675519039476
ISALGLVASA	10	Unmodified	_ISALGLVASA_					0	0	0			REV__ENST00000502474.5_1_4:155669525-155670285:+|nuORF	REV__ENST00000502474.5_1_4:155669525-155670285:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2704772949219	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.364	1	32.364	31.864	32.864	0								0	0	0	0.3639	1	12294	12294		40.778	2.9666	1		+		18144	14305	11399	11451	18422	18422					0.07378955557283007
ISARASVST	9	Unmodified	_ISARASVST_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.248291015625	2	446.248349	890.482145	-1.1671	-0.00052081	1.1828	0.00052781	0.015679	6.9967E-06	446.2487851056597	18.691	0.059628	18.691	18.653	18.713	0					4	2	2	0	0	0	0.50858	1	4933	4933		31.53	2.3803	1	57981	+		18145	14785	11400	11452	18423	18423					0.03252310375057732
ISASGGVVSI	10	Unmodified	_ISASGGVVSI_					0	0	0			REV__CON__P07744	REV__CON__P07744	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.25286865234375	2	445.2531	888.491647	-0.45994	-0.00020479	1.1917	0.00053062	0.73178	0.00032583	445.2531524884921	25.454	0.4715	25.454	25.162	25.633	0					27	9	4	0	0	0	0.39566	1	8863	8863		56.721	1.9447	1	730450	+	+	18146	12589	11401	11453	18424	18424					0.04294078660575451
ISAVEPRTSL	10	Unmodified	_ISAVEPRTSL_					0	0	0			REV__NUP210|p.L135Wfs*3|2|0.26|ENSG00000132182|chr3:13397390-13397390|G/-|frameshift_variant	REV__NUP210|p.L135Wfs*3|2|0.26|ENSG00000132182|chr3:13397390-13397390|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.20428466796875	3	358.204751	1071.59242	-2.029	-0.00072681	1.1487	0.00041147	-0.88033	-0.00031534	358.2050976760521	20.988	0.12846	20.988	20.936	21.064	0					5	3	2	0	0	0	0.56063	1	6028	6028		38.754	2.3069	1	86746	+		18147	14646	11402	11454	18425	18425					0.059491106434506946
ISAVKIIPV	9	Unmodified	_ISAVKIIPV_					0	0	0		nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1	nc|ENSG00000095637|Q9BX66-9|SORBS1	nc|ENSG00000095637|Q9BX66-9|SORBS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.3151550292969	2	470.315503	938.616454	-0.61866	-0.00029097	0.7744	0.00036421	0.15574	7.3245E-05	470.31560201716206	42.244	0.14462	42.244	42.178	42.322	0					9	7	2	0	0	0	0.39215	1	16010	16010		42.396	3.59	1	84698			18148	11456	11403	11455	18426	18426					0.14468995867764534
ISAWITKM	8	Unmodified	_ISAWITKM_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.263671875	2	475.262413	948.510274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.397	1	22.397	21.897	22.897	0								0	0	0	1.7419	1	6586	6586		31.955	5.1588	1				18149	6313	11404	11456	18427	18427					0.033959170307753084
ISCFDINVQ	9	Unmodified	_ISCFDINVQ_					0	0	0		nc|ENSG00000183844|P58499-2|FAM3B	nc|ENSG00000183844|P58499-2|FAM3B	nc|ENSG00000183844|P58499-2|FAM3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.75048828125	2	519.749867	1037.48518	1.6161	0.00083997	-1.2151	-0.00063154	0.40102	0.00020843	519.7494229668507	42.431	0.22579	42.431	42.296	42.522	0					17	6	4	0	0	0	0.1115	1	16918	16918		76.774	2.5191	1	148430			18150	11677	11405	11457	18428	18428					-0.03206182562462345
ISCRDSALA	9	Unmodified	_ISCRDSALA_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2341613769531	2	468.234384	934.454216	-0.12888	-6.0345E-05	-0.50649	-0.00023716	-0.63537	-0.0002975	468.23431713843297	20.415	0.21584	20.415	20.28	20.495	0					11	4	3	0	0	0	0.41113	1	6610	6610		40.778	0.71999	1	252410	+		18151	17481	11406	11458	18429	18429					-0.015633358767104255
ISCSDTPTRT	10	Unmodified	_ISCSDTPTRT_					0	0	0			REV__CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant	REV__CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7537231445312	2	540.753138	1079.49172	1.913	0.0010345	-0.51635	-0.00027922	1.3966	0.00075523	540.7527579391399	36.213	0.19587	36.213	36.134	36.329	0					10	5	2	0	0	0	0.58189	1	13652	13652		36.447	7.2972	1	97077	+		18152	12643	11407	11459	18430	18430					-0.04484289401739261
ISCTSRESD	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))TSRESD_	ISC(1)TSRESD		ISC(57)TSRESD		0	1	0			REV__nc|ENSG00000172059|O14901-2|KLF11	REV__nc|ENSG00000172059|O14901-2|KLF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7276000976562	2	527.72712	1053.43969	0.2848	0.0001503	0.65595	0.00034616	0.94075	0.00049646	527.7274486290365	29.291	0.14073	29.291	29.226	29.367	0					6	3	2	0	0	0	0.24095	1	10832	10832		56.721	12.604	1	85947	+		18153	16448	11408	11460	18431	18431	585				-0.08489452815501863
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(74)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7860717773438	2	526.283877	1050.5532	0.62436	0.00032859	-0.21373	-0.00011248	0.41063	0.00021611	526.2837949104121	36.937	0.27648	36.937	36.846	37.122	0					29	14	3	0	0	0	0.12239	1	12082	12082		74.255	22.92	1	460130			18154	8190	11409	11461	18432	18432	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(180)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2840576171875	2	526.283877	1050.5532	0.10045	5.2866E-05	0.084353	4.4394E-05	0.1848	9.7259E-05	526.2841639448939	37.216	0.52905	37.216	36.996	37.525	0					36	15	4	0	0	0	0.0012088	1	14079	14079		180.87	98.119	1	2544000			18155	8190	11409	11461	18433	18433	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(120)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2840576171875	2	526.283877	1050.5532	0.44411	0.00023373	-0.40483	-0.00021306	0.039284	2.0674E-05	526.2836341142329	36.985	0.5236	36.985	36.784	37.308	0					48	28	4	0	0	0	0.023928	1	12506	12506		115.49	48	1	532370			18156	8190	11409	11461	18434	18434	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(88)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2838745117188	2	526.283877	1050.5532	0.48017	0.00025271	0.94008	0.00049475	1.4203	0.00074746	526.2837830040808	37.002	0.14247	37.002	36.916	37.059	0					10	7	2	0	0	0	0.07136	1	12525	12525		87.696	18.069	1	51128			18157	8190	11409	11461	18435	18435	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(150)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2838745117188	2	526.283877	1050.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.132	1	37.132	36.632	37.632	0								0	0	0	0.0057146	1	14505	14505		154.12	76.801	1				18158	8190	11409	11461	18436	18436	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(120)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2843017578125	2	526.283877	1050.5532	0.22732	0.00011963	0.53876	0.00028354	0.76608	0.00040317	526.284156044406	37.184	0.31096	37.184	37.076	37.387	0					19	9	3	0	0	0	0.020674	1	14521	14521		120.87	67.517	1	333440			18159	8190	11409	11461	18437	18437	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(65)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2850952148438	2	526.283877	1050.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.943	1	36.943	36.443	37.443	0								0	0	0	0.12601	1	13226	13226		65.465	27.654	1				18160	8190	11409	11461	18438	18438	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(120)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.28466796875	2	526.283877	1050.5532	-1.2229	-0.00064361	2.233	0.0011752	1.01	0.00053156	526.2851995070765	36.97	0.28952	36.97	36.86	37.15	0					30	12	3	0	0	0	0.020674	1	13219	13219		120.87	59.896	1	660080			18161	8190	11409	11461	18439	18439	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(120)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2839965820312	2	526.283877	1050.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.134	1	37.134	36.634	37.634	0								0	0	0	0.0026431	1	14490	14490		117.81	54.505	1				18162	8190	11409	11461	18440	18440	358				0.029946870881985888
ISCVNLAFK	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))VNLAFK_	ISC(1)VNLAFK		ISC(200)VNLAFK		0	1	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2841796875	2	526.283877	1050.5532	3.4603	0.0018211	-3.4222	-0.0018011	0.038133	2.0069E-05	526.2821343198098	37.145	1.0405	37.145	36.846	37.886	0					47	21	5	0	0	0	1.3754E-05	1	14481	14481		204.62	114.25	1	6618900			18163	8190	11409	11461	18441	18441	358				0.029946870881985888
ISCVNLAFK	9	Unmodified	_ISCVNLAFK_					0	0	0		ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	ENST00000227758.6_3_11:102219989-102220022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.77313232421875	2	497.773145	993.531738	1.0089	0.00050219	-1.0525	-0.00052392	-0.043653	-2.1729E-05	497.77284631912363	40.754	0.4174	40.754	40.656	41.074	0					12	7	2	0	0	0	0.15163	1	16217	16217		67.494	19.836	1	205280			18164	8190	11409	11462	18442	18442					0.034713020594722366
ISCWGIKK	8	Unmodified	_ISCWGIKK_					0	0	0		ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENST00000321023.5_1_12:6204574-6232125:-|nuORF	ENST00000321023.5_1_12:6204574-6232125:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.76373291015625	2	467.762581	933.510608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.521	1	21.521	21.021	22.021	0								0	0	0	1.7419	1	6255	6255		30.504	1.3541	1				18165	8613	11410	11463	18443	18443					0.041193367506366485
ISDEFLVQF	9	Unmodified	_ISDEFLVQF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2783813476562	2	549.279315	1096.54408	-1.4881	-0.00081739	-1.3566	-0.00074515	-2.8447	-0.0015625	549.2784484377327	16.151	0.2844	16.151	16.093	16.377	0					21	8	4	0	0	0	0.05357	1	3757	3757		94.006	9.0909	1	1550300			18166	3556	11411	11464	18444	18444					-0.0003338299648021348
ISDIFRFLD	9	Unmodified	_ISDIFRFLD_					0	0	0		ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.301513671875	2	563.300581	1124.58661	0.42932	0.00024184	-0.25019	-0.00014093	0.17913	0.0001009	563.3008176723137	41.97	0.18645	41.97	41.875	42.062	0					16	9	3	0	0	0	0.47473	1	15914	15914		27.882	8.7787	1	109000			18167	6159	11412	11465	18445	18445					0.029300121317419325
ISDLLKKAQ	9	Unmodified	_ISDLLKKAQ_					0	0	0		ENSG00000205089|ENST00000378731|CCNI2;nc|ENSG00000205089|Q6ZMN8-3|CCNI2;nc|ENSG00000205089|Q6ZMN8-2|CCNI2	ENSG00000205089|ENST00000378731|CCNI2	ENSG00000205089|ENST00000378731|CCNI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.31072998046875	2	508.310949	1014.60735	-0.58111	-0.00029539	-0.26796	-0.0001362	-0.84907	-0.00043159	508.31082450666145	23.131	0.12115	23.131	23.066	23.187	0					6	4	2	0	0	0	0.2546	1	6922	6922		47.96	0	1	70962			18168	7733	11413	11466	18446	18446					0.10062602511425212
ISDLVRRR	8	Unmodified	_ISDLVRRR_					0	0	0		PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;nc|ENSG00000149090|Q6UXH9-3|PAMR1	PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant	PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8132629394531	2	507.811982	1013.60941	0.090404	4.5908E-05	3.0869	0.0015676	3.1773	0.0016135	507.8134635604281	25.004	0.10564	25.004	24.906	25.012	0					4	2	2	0	0	0	0.63077	1	7880	7880		44.117	2.6902	1	78085			18169	4859	11414	11467	18447	18447					0.1031507603989894
ISDTFPGKI	9	Unmodified	_ISDTFPGKI_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant;KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2683410644531	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.911	1	34.911	34.411	35.411	0								0	0	0	0.14211	1	13491	13491		54.776	0	1				18170	7423;10101	11415	11468	18448	18448					0.03374651694673503
ISEAKGIA	8	Unmodified	_ISEAKGIA_					0	0	0			REV__tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1	REV__tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.72943115234375	2	394.729261	787.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.167	1	25.167	24.667	25.667	0								0	0	0	1.7419	1	7538	7538		30.504	3.7075	1		+		18171	22127	11416	11469	18449	18449					0.041744244603819425
ISEALNTVY	9	Unmodified	_ISEALNTVY_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;ABCA13|p.H2188Ifs*3|1|0.11|ENSG00000179869|chr7:48276226-48276226|C/-|frameshift_variant;ABCA13|p.K1949Rfs*10|1|0.04|ENSG00000179869|chr7:48275509-48275510|-/TCGGG|frameshift_variant;ABCA13|p.N1764Tfs*18|1|0.33|ENSG00000179869|chr7:48274953-48274953|A/-|frameshift_variant;ABCA13|p.S1533Lfs*16|1|0.1|ENSG00000179869|chr7:48274262-48274263|-/CT|frameshift_variant;ABCA13|p.E1535Lfs*6|1|0.06|ENSG00000179869|chr7:48274267-48274268|-/TTTAGGTTTCTTCTCT|frameshift_variant;ABCA13|p.P1447Tfs*22|1|0.49|ENSG00000179869|chr7:48273997-48273998|-/A|frameshift_variant;ABCA13|p.L1248Tfs*2|1|0.16|ENSG00000179869|chr7:48273400-48273401|-/A|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.26422119140625	2	505.263665	1008.51278	0.11973	6.0496E-05	0.38893	0.00019651	0.50866	0.00025701	505.26372181975483	42.278	0.24207	42.278	42.194	42.437	0					23	11	3	0	0	0	0.0792	1	16593	16593		84.916	0	1	143100			18172	6783	11417	11470	18450	18450					0.008860439694331035
ISEATLAIKHA	11	Unmodified	_ISEATLAIKHA_					0	0	0			REV__tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	REV__tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	385.2239990234375	3	385.224034	1152.65027	-0.011316	-4.3592E-06	-0.29455	-0.00011347	-0.30587	-0.00011783	385.22402015701584	19.799	0.14195	19.799	19.759	19.901	0					6	4	2	0	0	0	0.71641	1	5195	5195		26.063	2.5407	1	89316	+		18173	21756	11418	11471	18451	18451					0.08005372568845814
ISEENFRVM	9	Unmodified	_ISEENFRVM_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.7745361328125	2	562.773874	1123.53319	1.7847	0.0010044	-1.0137	-0.00057047	0.771	0.0004339	562.7733952435314	38.588	0.18753	38.588	38.53	38.717	0					12	8	2	0	0	0	0.020674	1	14678	14678		120.87	69.533	1	104930			18174	4234	11419	11472	18452	18452					-0.02363108642384759
ISEENFRVM	9	Unmodified	_ISEENFRVM_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.7734375	2	562.773874	1123.53319	0.13096	7.3699E-05	1.0383	0.00058432	1.1692	0.00065802	562.7741076338067	38.416	0.1165	38.416	38.322	38.439	0					11	6	2	0	0	0	0.44593	1	12945	12945		37.812	6.2817	1	49138			18175	4234	11419	11472	18453	18453					-0.02363108642384759
ISEENFRVM	9	Unmodified	_ISEENFRVM_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7744750976562	2	562.773874	1123.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.583	1	38.583	38.083	39.083	0								0	0	0	0.029433	1	15143	15143		96.034	29.604	1				18176	4234	11419	11472	18454	18454					-0.02363108642384759
ISEENFRVM	9	Unmodified	_ISEENFRVM_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7743530273438	2	562.773874	1123.53319	1.7696	0.00099587	-0.79935	-0.00044985	0.97024	0.00054602	562.7734659571236	38.535	0.31079	38.535	38.435	38.746	0					16	6	3	0	0	0	0.0067848	1	15149	15149		150.36	93.641	1	788480			18177	4234	11419	11472	18455	18455					-0.02363108642384759
ISEENFRVM	9	Unmodified	_ISEENFRVM_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7739868164062	2	562.773874	1123.53319	3.4713	0.0019536	-3.3886	-0.001907	0.082747	4.6568E-05	562.7722383060013	38.557	0.44308	38.557	38.334	38.778	0					24	9	4	0	0	0	0.0067848	1	15162	15162		150.36	77.482	1	640060			18178	4234	11419	11472	18456	18456					-0.02363108642384759
ISEFTVIPA	9	Unmodified	_ISEFTVIPA_					0	0	0			REV__tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	REV__tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.76806640625	2	488.771126	975.527698	-2.8985	-0.0014167	-2.0022	-0.00097864	-4.9007	-0.0023953	488.77009087558855	23.837	0.29277	23.837	23.701	23.994	0					10	7	2	0	0	0	0.50858	1	7389	7389		31.955	0	1	114150	+		18179	21981	11420	11473	18457	18457					0.03895535837409625
ISEIEKRY	8	Unmodified	_ISEIEKRY_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7876586914062	2	519.284931	1036.55531	1.6043	0.00083307	-1.4126	-0.00073355	0.19165	9.952E-05	519.2844610805738	39.284	0.46222	39.284	39.064	39.526	0					23	9	3	0	0	0	0.48092	1	15467	15467		51.335	0	1	2179600			18180	5613	11421	11474	18458	18458					0.03849439097666618
ISEKKAISM	9	Oxidation (M)	_ISEKKAISM(Oxidation (M))_		ISEKKAISM(1)		ISEKKAISM(73)	0	0	1		nc|ENSG00000203757|Q8NGY3|OR6K3;ENSG00000203757|ENST00000368145|OR6K3	nc|ENSG00000203757|Q8NGY3|OR6K3	nc|ENSG00000203757|Q8NGY3|OR6K3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7849426269531	2	511.781167	1021.54778	3.1058	0.0015895	3.4936	0.0017879	6.5994	0.0033774	511.7830427550264	32.898	0.54321	32.898	32.64	33.183	0					23	9	4	0	0	0	0.12834	1	12411	12411		72.879	17.375	1	1158000			18181	7657	11422	11475	18459	18459		310			0.037869635057404594
ISEKRIGA	8	Unmodified	_ISEKRIGA_					0	0	0			REV__ENST00000477801.1_1_1:153363297-153363519:-|nuORF	REV__ENST00000477801.1_1_1:153363297-153363519:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2611083984375	2	437.261259	872.507966	0.72264	0.00031598	-1.3424	-0.00058699	-0.61978	-0.00027101	437.26084138594837	18.937	0.24715	18.937	18.8	19.047	0					8	5	2	0	0	0	0.66372	1	5779	5779		38.806	1.647	1	577290	+		18182	19555	11423	11476	18460	18460					0.06661204617319072
ISEMLRSR	8	Unmodified	_ISEMLRSR_					0	0	0		nc|ENSG00000163945|Q2YD98-2|UVSSA;ENSG00000163945|ENST00000389851|UVSSA	nc|ENSG00000163945|Q2YD98-2|UVSSA	nc|ENSG00000163945|Q2YD98-2|UVSSA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.1832275390625	3	331.183293	990.528049	0.54357	0.00018002	-0.73126	-0.00024218	-0.18769	-6.2159E-05	331.1830541833693	15.221	0.11026	15.221	15.164	15.274	0					4	2	2	0	0	0	0.79882	1	4129	4129		15.642	0	1	504760			18183	5631	11424	11477	18461	18461					0.03240632285644551
ISENSTTCRK	10	Unmodified	_ISENSTTCRK_					0	0	0		ENST00000499522.6_1_8:104258868-104279674:-|nuORF	ENST00000499522.6_1_8:104258868-104279674:-|nuORF	ENST00000499522.6_1_8:104258868-104279674:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.1889953613281	3	380.188884	1137.54482	0.49411	0.00018786	0.25199	9.5804E-05	0.7461	0.00028366	380.18896769302876	20.687	0.21838	20.687	20.612	20.83	0					12	4	4	0	0	0	0.54197	1	6748	6748		30.569	0.25114	1	703330			18184	10143	11425	11478	18462	18462					-0.018449116191050052
ISEQAAVL	8	Unmodified	_ISEQAAVL_					0	0	0		PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1;PER1|p.L380Cfs*73|1|0.18|ENSG00000179094|chr17:8148093-8148093|G/-|frameshift_variant;PER1|p.L466*|1|0.14|ENSG00000179094|chr17:8147571-8147571|G/-|frameshift_variant;ENST00000579065.1_1_17:8052750-8054072:-|nuORF	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.7344055175781	2	415.734543	829.454533	0.065579	2.7263E-05	-0.1616	-6.7181E-05	-0.096016	-3.9917E-05	415.73443701123244	23.471	0.16625	23.471	23.412	23.578	0					6	3	2	0	0	0	0.61925	1	8102	8102		45.972	0	1	148990			18185	6755	11426	11479	18463	18463					0.03298407114800739
ISERTAIVL	9	Unmodified	_ISERTAIVL_					0	0	0			REV__nc|ENSG00000159267|P50747|HLCS	REV__nc|ENSG00000159267|P50747|HLCS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3030090332031	2	501.303124	1000.5917	-0.10635	-5.3315E-05	-0.91532	-0.00045885	-1.0217	-0.00051217	501.30312743545915	21.131	0.13455	21.131	21.041	21.175	0					8	3	3	0	0	0	0.22377	1	6673	6673		58.782	19.529	1	326970	+		18186	15708	11427	11480	18464	18464					0.09142315994347427
ISFDASKAK	9	Unmodified	_ISFDASKAK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.76593017578125	2	483.766374	965.518196	0.051626	2.4975E-05	-0.59928	-0.00028991	-0.54765	-0.00026494	483.7661562542519	22.507	0.13358	22.507	22.46	22.594	0					7	4	2	0	0	0	0.076532	1	6373	6373		85.862	16.234	1	149050			18187	1543	11428	11481	18465	18465					0.03405767551896588
ISFDASKAK	9	Unmodified	_ISFDASKAK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7662048339844	2	483.766374	965.518196	-0.17617	-8.5223E-05	-0.011719	-5.6691E-06	-0.18789	-9.0893E-05	483.76633372521144	22.842	0.25165	22.842	22.756	23.007	0					13	6	4	0	0	0	0.02429	1	7470	7470		114.89	27.198	1	838650			18188	1543	11428	11481	18466	18466					0.03405767551896588
ISFDASKAK	9	Unmodified	_ISFDASKAK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7662353515625	2	483.766374	965.518196	-0.61056	-0.00029537	0.54662	0.00026443	-0.063941	-3.0933E-05	483.7665363464406	22.736	0.21713	22.736	22.628	22.845	0					10	4	3	0	0	0	0.011389	1	7749	7749		138.06	15.886	1	802210			18189	1543	11428	11481	18467	18467					0.03405767551896588
ISFGAFVAK	9	Unmodified	_ISFGAFVAK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2687683105469	2	470.268553	938.522553	0.17455	8.2087E-05	0.075841	3.5666E-05	0.25039	0.00011775	470.2685007510312	42.697	0.13861	42.697	42.627	42.766	0					10	6	2	0	0	0	0.19605	1	16152	16152		62.107	3.3255	1	125040			18190	4549	11429	11482	18468	18468					0.05083276765469691
ISFGAFVAK	9	Unmodified	_ISFGAFVAK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2684326171875	2	470.268553	938.522553	0.60912	0.00028645	-1.5644	-0.00073569	-0.95529	-0.00044924	470.26782227099744	42.637	0.21526	42.637	42.578	42.794	0					18	10	2	0	0	0	0.0792	1	16721	16721		84.916	16.129	1	189010			18191	4549	11429	11482	18469	18469					0.05083276765469691
ISFGAFVAK	9	Unmodified	_ISFGAFVAK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2682189941406	2	470.268553	938.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.618	1	42.618	42.118	43.118	0								0	0	0	0.0066162	1	17020	17020		113.41	19.405	1				18192	4549	11429	11482	18470	18470					0.05083276765469691
ISFGAFVAK	9	Unmodified	_ISFGAFVAK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.268310546875	2	470.268553	938.522553	0.53041	0.00024944	-1.2245	-0.00057584	-0.69407	-0.0003264	470.26795028504716	42.623	0.20013	42.623	42.545	42.746	0					12	5	3	0	0	0	0.055856	1	17013	17013		93.195	24.409	1	363560			18193	4549	11429	11482	18471	18471					0.05083276765469691
ISFGYGGY	8	Unmodified	_ISFGYGGY_					0	0	0			REV__ENSG00000186967|ENST00000334058|KRTAP19-4	REV__ENSG00000186967|ENST00000334058|KRTAP19-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.70269775390625	2	432.200336	862.386119	-0.25547	-0.00011041	1.5678	0.00067762	1.3124	0.00056721	432.2010306818198	13.83	0.15749	13.83	13.712	13.87	0					11	7	2	0	0	0	0.7764	1	2742	2742		4.6817	4.6817	1	105780	+		18194	17101	11430	11483	18472	18472					-0.05057837465039938
ISFIYYPWP	9	Unmodified	_ISFIYYPWP_					0	0	0			REV__tr|U7SU34|U7SU34_FUSNUTIGR02206familymembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01004PE=4SV=1	REV__tr|U7SU34|U7SU34_FUSNUTIGR02206familymembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01004PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.304443359375	2	593.302593	1184.59063	0.29178	0.00017312	2.022	0.0011997	2.3138	0.0013728	593.3040741523358	30.867	0.22857	30.867	30.771	30.999	0					12	5	3	0	0	0	0.41354	1	11188	11188		40.573	2.7611	1	304030	+		18195	21958	11431	11484	18473	18473					0.005721016254710776
ISFKDGKK	8	Unmodified	_ISFKDGKK_					0	0	0			REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.771240234375	2	461.77146	921.528367	-0.90594	-0.00041834	0.23108	0.0001067	-0.67486	-0.00031163	461.7717886536529	23.586	0.16535	23.586	23.529	23.695	0					5	3	2	0	0	0	0.58597	1	8159	8159		51.335	3.6781	1	125750	+		18196	22089	11432	11485	18474	18474					0.0644637527714167
ISFKDGKKK	9	Unmodified	_ISFKDGKKK_					0	0	0			REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.81982421875	2	525.818941	1049.62333	1.9535	0.0010272	-1.2086	-0.00063549	0.74488	0.00039167	525.8184010499973	19.382	0.14476	19.382	19.308	19.453	0					8	3	3	0	0	0	0.31937	1	5865	5865		33.922	3.6039	1	137060	+		18197	22089	11433	11486	18475	18475					0.10050308748327552
ISFLRDLSC	9	Unmodified	_ISFLRDLSC_					0	0	0			REV__ENST00000345732.8_1_11:60236054-60236291:+|nuORF	REV__ENST00000345732.8_1_11:60236054-60236291:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2723388671875	2	527.273509	1052.53247	0.33935	0.00017893	-3.0381	-0.0016019	-2.6987	-0.001423	527.2720312338361	30.953	0.11876	30.953	30.87	30.988	0					7	4	2	0	0	0	0.41958	1	10206	10206		32.812	9.7699	1	74627	+		18198	18481	11434	11487	18476	18476					0.008300967085460798
ISFPATGCQK	10	Carbamidomethyl (C)	_ISFPATGC(Carbamidomethyl (C))QK_	ISFPATGC(1)QK		ISFPATGC(58)QK		0	1	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7767944335938	2	554.776416	1107.53828	1.3099	0.00072672	-0.50027	-0.00027754	0.80965	0.00044918	554.7762693753812	29.779	0.38165	29.779	29.577	29.958	0					35	15	3	0	0	0	0.38194	1	9387	9387		58.23	17.452	1	216670			18199	4145	11435	11488	18477	18477	180				-0.01118804779821403
ISFPATGCQK	10	Carbamidomethyl (C)	_ISFPATGC(Carbamidomethyl (C))QK_	ISFPATGC(1)QK		ISFPATGC(110)QK		0	1	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7775268554688	2	554.776416	1107.53828	1.6506	0.00091571	-0.23349	-0.00012953	1.4171	0.00078618	554.7764919198098	30.027	0.51667	30.027	29.801	30.317	0					28	11	4	0	0	0	0.03454	1	11182	11182		114.89	32.144	1	720370			18200	4145	11435	11488	18478	18478	180				-0.01118804779821403
ISFYQLIF	8	Unmodified	_ISFYQLIF_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7830810546875	2	515.784036	1029.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.462	1	30.462	29.962	30.962	0								0	0	0	1.7419	1	10008	10008		50.025	3.2581	1				18201	5624	11436	11489	18479	18479					0.039924300797110845
ISGAVKPSLK	10	Unmodified	_ISGAVKPSLK_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.8780212402344	3	333.878087	998.612431	0.65233	0.0002178	-0.76308	-0.00025478	-0.11075	-3.6979E-05	333.8778311142831	22.608	0.66663	22.608	22.031	22.698	0					34	15	3	0	0	0	0.56931	1	7342	7342		35.178	0	1	675240			18202	22858	11437	11490	18480	18480					0.11306906374045411
ISGCACGL	8	Acetyl (Protein N-term),2 Carbamidomethyl (C)	_(Acetyl (Protein N-term))ISGC(Carbamidomethyl (C))AC(Carbamidomethyl (C))GL_	ISGC(1)AC(1)GL		ISGC(45)AC(45)GL		1	2	0			REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.1885681152344	2	440.188588	878.362623	0.28379	0.00012492	-1.457	-0.00064137	-1.1732	-0.00051644	440.18821624500333	25.71	0.59865	25.71	25.416	26.015	0					35	17	4	0	0	0	0.6282	1	7698	7698		44.531	12.576	1	454240	+		18203	18051	11438	11491	18481	18481	636;637				-0.08142342565543004
ISGDAFRLK	9	Unmodified	_ISGDAFRLK_					0	0	0			REV__nc|ENSG00000073578|P31040-3|SDHA	REV__nc|ENSG00000073578|P31040-3|SDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.787841796875	2	503.787641	1005.56073	-0.060936	-3.0699E-05	0.69257	0.00034891	0.63163	0.00031821	503.7876864889893	34.912	0.11641	34.912	34.838	34.954	0					5	3	2	0	0	0	0.42902	1	13056	13056		39.253	0.44669	1	169560	+		18204	13205	11439	11492	18482	18482					0.05817162680136789
ISGEPTSL	8	Unmodified	_ISGEPTSL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2104187011719	2	402.210901	802.407249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.966	1	15.966	15.466	16.466	0								0	0	0	1.7419	1	4325	4325		38.806	5.2906	1				18205	7741	11440	11493	18483	18483					-0.0018587215619163544
ISGERQLEE	9	Unmodified	_ISGERQLEE_					0	0	0			REV__ENST00000589222.5_2_17:59457929-59469483:+|nuORF	REV__ENST00000589222.5_2_17:59457929-59469483:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7695922851562	2	530.767103	1059.51965	3.4309	0.001821	0.90366	0.00047964	4.3346	0.0023006	530.7675374416707	38.667	0.40709	38.667	38.56	38.967	0					21	8	4	0	0	0	0.0792	1	15233	15233		84.916	2.675	1	1230500	+		18206	20508	11441	11494	18484	18484					-0.007726431500032049
ISGFYKLL	8	Unmodified	_ISGFYKLL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7801513671875	2	470.778754	939.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.409	1	42.409	41.909	42.909	0								0	0	0	1.7419	1	16069	16069		45.952	8.7928	1				18207	8001	11442	11495	18485	18485					0.07076447425288279
ISGGERLRE	9	Unmodified	_ISGGERLRE_					0	0	0			REV__nc|ENSG00000168137|Q9C0A6-2|SETD5	REV__nc|ENSG00000168137|Q9C0A6-2|SETD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7777404785156	2	508.777805	1015.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.439	1	19.439	18.939	19.939	0								0	0	0	0.17378	1	6008	6008		54.776	3.4409	1		+		18208	16243	11443	11496	18486	18486					0.03390786669365298
ISGKVSVTPC	10	Unmodified	_ISGKVSVTPC_					0	0	0		ENST00000473964.5_1_1:2429963-2431264:+|nuORF	ENST00000473964.5_1_1:2429963-2431264:+|nuORF	ENST00000473964.5_1_1:2429963-2431264:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7657165527344	2	495.76806	989.521567	-2.407	-0.0011933	-1.0194	-0.00050541	-3.4264	-0.0016987	495.76766380224865	27.611	0.29625	27.611	27.361	27.658	0					12	7	2	0	0	0	0.55603	1	9008	9008		39.253	0	1	78030			18209	9884	11444	11497	18487	18487					0.026386943342572522
ISGNPSLIK	9	Unmodified	_ISGNPSLIK_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7763977050781	2	464.776742	927.538931	0.13321	6.1915E-05	-0.17322	-8.0511E-05	-0.04001	-1.8596E-05	464.77654527396334	22.685	0.21868	22.685	22.575	22.793	0					11	5	3	0	0	0	0.056004	1	7388	7388		93.143	2.5424	1	128310			18210	11821	11445	11498	18488	18488					0.07226357931574512
ISGNVYILK	9	Unmodified	_ISGNVYILK_					0	0	0		MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.79998779296875	2	503.800217	1005.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.385	1	35.385	34.885	35.885	0								0	0	0	0.15687	1	13708	13708		58.23	12.278	1				18211	3602	11446	11499	18489	18489					0.08331217482714237
ISGNVYILK	9	Unmodified	_ISGNVYILK_					0	0	0		MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.800048828125	2	503.800217	1005.58588	-0.42027	-0.00021173	0.089795	4.5239E-05	-0.33047	-0.00016649	503.8004018367918	35.339	0.16941	35.339	35.229	35.398	0					6	3	2	0	0	0	0.21263	1	13625	13625		60.118	14.146	1	140940			18212	3602	11446	11499	18490	18490					0.08331217482714237
ISGQHLVAG	9	Unmodified	_ISGQHLVAG_					0	0	0		ENST00000427761.1_1_13:68406302-68406587:-|nuORF	ENST00000427761.1_1_13:68406302-68406587:-|nuORF	ENST00000427761.1_1_13:68406302-68406587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.2459411621094	2	441.245609	880.476666	-1.0816	-0.00047727	1.7277	0.00076232	0.646	0.00028505	441.2464409284601	28.615	0.12909	28.615	28.545	28.674	0					9	5	2	0	0	0	0.48389	1	9242	9242		34.173	1.3601	1	91854			18213	9458	11447	11500	18491	18491					0.031646315832290384
ISGRGKIDPL	10	Unmodified	_ISGRGKIDPL_					0	0	0			REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.5463562011719	3	352.545108	1054.61349	3.0402	0.0010718	0.56175	0.00019804	3.602	0.0012699	352.5453661098157	29.111	1.5485	29.111	28.877	30.425	0					70	31	5	0	0	0	0.54197	1	10577	10577		45.022	12.272	1	21318000	+		18214	19961	11448	11501	18492	18492					0.08837120742941806
ISGTEEPFDP	10	Unmodified	_ISGTEEPFDP_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1;nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENSG00000144596|ENST00000621039|GRIP2	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2450561523438	2	546.248212	1090.48187	-1.5	-0.00081936	-2.7547	-0.0015047	-4.2547	-0.0023241	546.2467050806702	37.682	0.11337	37.682	37.623	37.737	0					9	5	2	0	0	0	0.51121	1	13484	13484		44.117	12.162	1	75872			18215	5146	11449	11502	18493	18493					-0.05975154135444427
ISGTGKAL	8	Unmodified	_ISGTGKAL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.7239685058594	2	373.723978	745.433404	-0.33216	-0.00012413	0.38957	0.00014559	0.057411	2.1456E-05	373.7240814286364	20.402	0.11573	20.402	20.344	20.46	0					4	2	2	0	0	0	0.43813	1	6485	6485		66.429	0.6261	1	219060			18216	1277	11450	11503	18494	18494					0.050504418059517775
ISHFKKILA	9	Unmodified	_ISHFKKILA_					0	0	0		ENST00000574267.1_1_17:19463799-19467910:-|nuORF	ENST00000574267.1_1_17:19463799-19467910:-|nuORF	ENST00000574267.1_1_17:19463799-19467910:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.88885498046875	3	352.890327	1055.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.647	1	24.647	24.147	25.147	0								0	0	0	0.30504	1	7718	7718		34.173	11.593	1				18217	10818	11451	11504	18495	18495					0.12355202990602265
ISHITENSI	9	Unmodified	_ISHITENSI_					0	0	0			REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.513671875	3	338.513585	1012.51892	0.51352	0.00017383	-0.36948	-0.00012507	0.14404	4.8761E-05	338.5134601775585	20.742	0.11431	20.742	20.685	20.799	0					6	2	3	0	0	0	0.47038	1	6499	6499		42.864	0	1	352230	+		18218	12024	11452	11505	18496	18496					0.013165622009523759
ISHITENSI	9	Unmodified	_ISHITENSI_					0	0	0			REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2667236328125	2	507.266739	1012.51892	0.16168	8.2015E-05	-0.40426	-0.00020507	-0.24258	-0.00012305	507.2664097252881	20.687	0.16833	20.687	20.579	20.747	0					7	3	3	0	0	0	0.02953	1	6733	6733		109.48	2.7953	1	340860	+		18219	12024	11452	11505	18497	18497					0.013165622009523759
ISHLMSSQDK	10	Unmodified	_ISHLMSSQDK_					0	0	0		ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENST00000586898.1_1_17:49269519-49270175:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.2847900390625	2	573.284605	1144.55466	0.071475	4.0976E-05	0.50862	0.00029158	0.58009	0.00033256	573.284943193272	26.436	0.31345	26.436	26.238	26.551	0					22	10	3	0	0	0	0.50881	1	8322	8322		44.377	1.5129	1	78725			18220	10907	11453	11506	18498	18498					-0.011837236136898355
ISHNQPQGY	9	Unmodified	_ISHNQPQGY_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2486572265625	2	522.24888	1042.48321	0.42214	0.00022046	-0.0069412	-3.6251E-06	0.4152	0.00021684	522.2492784314411	33.288	0.16647	33.288	33.199	33.365	0					5	3	2	0	0	0	0.32741	1	12660	12660		47.916	1.9636	1	79748	+		18221	13350	11454	11507	18499	18499					-0.03633475256037855
ISHPAVWAK	9	Unmodified	_ISHPAVWAK_					0	0	0		ENST00000487062.1_1_1:38423860-38425872:-|nuORF	ENST00000487062.1_1_1:38423860-38425872:-|nuORF	ENST00000487062.1_1_1:38423860-38425872:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7861022949219	2	504.784902	1007.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.689	1	14.689	14.189	15.189	0								0	0	0	0.35899	1	3225	3225		23.042	1.0826	1				18222	10031	11455	11508	18500	18500					0.05177483888326151
ISHVLTKN	8	Unmodified	_ISHVLTKN_					0	0	0			REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.2690734863281	2	456.269084	910.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.389	1	36.389	35.889	36.889	0								0	0	0	1.7419	1	14168	14168		21.96	2.5999	1		+		18223	16090	11456	11509	18501	18501					0.06477491134353386
ISHYAMMKK	9	Oxidation (M)	_ISHYAM(Oxidation (M))MKK_		ISHYAM(0.868)M(0.132)KK		ISHYAM(8.2)M(-8.2)KK	0	0	1		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7868041992188	2	562.783187	1123.55182	1.7699	0.00099607	3.6108	0.0020321	5.3807	0.0030282	562.785415986469	42.622	0.16629	42.622	42.545	42.712	0					10	4	3	0	0	0	0.1236	1	17015	17015		73.975	7.5455	2	151770			18224	5463	11457	11510	18502	18502		220			-0.005012702722069662
ISIDGRLA	8	Unmodified	_ISIDGRLA_					0	0	0			REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.747802734375	2	422.747985	843.481417	-0.34482	-0.00014577	0.10945	4.6269E-05	-0.23537	-9.9502E-05	422.74801277051284	27.365	0.37291	27.365	27.204	27.577	0					11	7	3	0	0	0	0.29286	1	9797	9797		84.916	5.2029	1	586510	+		18225	22327	11458	11511	18503	18503					0.05341515725979207
ISIGGKLPV	9	Unmodified	_ISIGGKLPV_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2842102050781	2	442.284203	882.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.141	1	34.141	33.641	34.641	0								0	0	0	0.2591	1	13054	13054		42.396	8.2236	1				18226	7588	11459	11512	18504	18504					0.10787849799567084
ISIGQLVSL	9	Unmodified	_ISIGQLVSL_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant;nc|ENSG00000001626|P13569-3|CFTR	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2867736816406	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.319	1	39.319	38.819	39.819	0								0	0	0	0.072369	1	15529	15529		79.713	2.866	1				18227	500	11460	11513	18505	18505					0.09219528591370363
ISIGTFSFF	9	Unmodified	_ISIGTFSFF_					0	0	0			REV__tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	REV__tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7655029296875	2	509.765843	1017.51713	1.3575	0.00069202	-3.0339	-0.0015466	-1.6764	-0.00085457	509.7645691664678	24.024	0.41648	24.024	23.763	24.179	0					18	6	4	0	0	0	0.13519	1	8243	8243		71.296	20.103	1	301160	+		18228	21883	11461	11514	18506	18506					0.009075531830035288
ISIHVGQAG	9	Unmodified	_ISIHVGQAG_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000430114.1_1_1:202827276-202830656:-|nuORF;ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.2455139160156	2	441.245609	880.476666	0.52775	0.00023287	-0.66212	-0.00029216	-0.13437	-5.9291E-05	441.2454285910898	28.871	0.2641	28.871	28.712	28.976	0					11	5	3	0	0	0	0.17854	1	10638	10638		64.207	18.255	1	769310			18229	3319;9595	11462	11515	18507	18507					0.03164631583240407
ISIHVGQAG	9	Unmodified	_ISIHVGQAG_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000430114.1_1_1:202827276-202830656:-|nuORF;ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.2460021972656	2	441.245609	880.476666	-0.54967	-0.00024254	0.73949	0.0003263	0.18983	8.376E-05	441.2458772320222	28.679	0.16194	28.679	28.56	28.722	0					8	4	2	0	0	0	0.36892	1	9546	9546		44.377	7.2181	1	55339			18230	3319;9595	11462	11515	18508	18508					0.03164631583240407
ISIHVGQAG	9	Unmodified	_ISIHVGQAG_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000430114.1_1_1:202827276-202830656:-|nuORF;ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.24554443359375	2	441.245609	880.476666	0.7237	0.00031933	-1.0198	-0.00044998	-0.2961	-0.00013065	441.245246813288	28.801	0.21797	28.801	28.691	28.909	0					9	4	3	0	0	0	0.35021	1	10489	10489		45.972	0.020292	1	711120			18231	3319;9595	11462	11515	18509	18509					0.03164631583240407
ISIRGGKLM	9	Unmodified	_ISIRGGKLM_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;ROBO2|p.K1290Nfs*20|1|0.44|ENSG00000185008|chr3:77634974-77634974|A/-|frameshift_variant;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2;ROBO2|p.P740Tfs*14|1|0.27|ENSG00000185008|chr3:77577498-77577499|-/C|frameshift_variant;ROBO2|p.G821Wfs*7|1|0.37|ENSG00000185008|chr3:77580078-77580079|-/T|frameshift_variant;ROBO2|p.K260Rfs*19|1|0.46|ENSG00000185008|chr3:77493351-77493351|A/-|frameshift_variant;ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7931213378906	2	487.794412	973.574271	-1.246	-0.0006078	-1.8406	-0.00089784	-3.0866	-0.0015056	487.7935061195061	25.453	0.31716	25.453	25.312	25.629	0					19	11	2	0	0	0	0.41958	1	7922	7922		25.574	0	1	142040			18232	7053	11463	11516	18510	18510					0.08642697187747217
ISIYEFAQK	9	Unmodified	_ISIYEFAQK_					0	0	0			REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7940673828125	2	549.795132	1097.57571	-0.32235	-0.00017723	-2.0878	-0.0011479	-2.4102	-0.0013251	549.7938571314336	20.62	0.2716	20.62	20.543	20.814	0					12	8	2	0	0	0	0.22837	1	5780	5780		60.972	6.1956	1	332960	+		18233	12937	11464	11517	18511	18511					0.03082609757461796
ISKEEKIT	8	Unmodified	_ISKEEKIT_					0	0	0			REV__ENST00000556385.5_1_14:93022207-93081825:+|nuORF	REV__ENST00000556385.5_1_14:93022207-93081825:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.27410888671875	2	474.274032	946.533512	-1.6014	-0.00075951	1.7332	0.00082199	0.13173	6.2477E-05	474.27460396665793	35.151	0.16167	35.151	35.082	35.244	0					11	7	2	0	0	0	0.66095	1	11887	11887		39.253	1.4413	1	123100	+		18234	13563	11465	11518	18512	18512					0.058106343490862855
ISKEFVLGR	9	Unmodified	_ISKEFVLGR_					0	0	0		ENST00000524717.5_1_11:95826530-95826638:-|nuORF	ENST00000524717.5_1_11:95826530-95826638:-|nuORF	ENST00000524717.5_1_11:95826530-95826638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.209716796875	3	350.209836	1047.60768	-0.04464	-1.5633E-05	0.029264	1.0249E-05	-0.015375	-5.3846E-06	350.2097901787556	30.171	0.56176	30.171	29.896	30.458	0					26	11	4	0	0	0	0.4966	1	11120	11120		40.058	13.365	1	1316900			18235	10347	11466	11519	18513	18513					0.08578022231290561
ISKIDELKV	9	Unmodified	_ISKIDELKV_					0	0	0			REV__tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	REV__tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.88140869140625	3	348.881497	1043.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.825	1	26.825	26.325	27.325	0								0	0	0	0.11736	1	9647	9647		67.494	0.53175	1		+		18236	22129	11467	11520	18514	18514					0.10259469308630287
ISKLSQLV	8	Unmodified	_ISKLSQLV_					0	0	0		ENST00000497388.5_1_7:129933020-129939280:+|nuORF;ENST00000470542.5_1_7:129933020-129945674:+|nuORF;nc|ENSG00000128510|Q9UI42-2|CPA4;ENSG00000128510|ENST00000222482|CPA4	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2813720703125	2	444.28166	886.548768	-0.47859	-0.00021263	0.021384	9.5005E-06	-0.4572	-0.00020313	444.28160951657134	23.544	0.21508	23.544	23.435	23.65	0					9	4	3	0	0	0	0.59773	1	8007	8007		49.442	3.4693	1	969030			18237	3543	11468	11521	18515	18515					0.10095545936951567
ISKNITMFG	9	Unmodified	_ISKNITMFG_					0	0	0		tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.51751708984375	3	337.516161	1009.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.03	1	12.03	11.53	12.53	0								0	0	0	0.35507	1	2464	2464		18.262	0	1				18238	22583	11469	11522	18516	18516					0.022269981968747743
ISKPAFVVQ	9	Unmodified	_ISKPAFVVQ_					0	0	0			REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant	REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7964782714844	2	494.794935	987.575317	0.919	0.00045472	2.069	0.0010237	2.988	0.0014784	494.7961900366278	38.209	0.29354	38.209	38.111	38.404	0					11	6	3	0	0	0	0.095583	1	15014	15014		84.916	15.288	1	303270	+		18239	14806	11470	11523	18517	18517					0.08103234828274708
ISKRFDDE	8	Unmodified	_ISKRFDDE_					0	0	0			REV__ENST00000430524.5_1_22:20114727-20114784:+|nuORF	REV__ENST00000430524.5_1_22:20114727-20114784:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2509765625	2	505.251089	1008.48762	-0.78267	-0.00039545	0.42201	0.00021322	-0.36066	-0.00018223	505.25120040739364	26.059	0.18541	26.059	26	26.185	0					9	6	2	0	0	0	0.41952	1	8151	8151		68.485	15.396	1	156520	+		18240	19159	11471	11524	18518	18518					-0.016280108331443444
ISKSCRLKK	9	Unmodified	_ISKSCRLKK_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.8856506347656	3	354.886588	1061.63793	0.31339	0.00011122	-3.7594	-0.0013342	-3.446	-0.0012229	354.88492898124923	16.129	0.36686	16.129	15.88	16.247	0					11	7	3	0	0	0	0.1424	1	4541	4541		69.628	16.691	1	161630			18241	9907	11472	11525	18519	18519					0.1095805762481632
ISKSCRLKK	9	Unmodified	_ISKSCRLKK_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.8247680664062	2	531.826243	1061.63793	0.28834	0.00015335	-3.3426	-0.0017777	-3.0543	-0.0016244	531.8244334888559	16.105	0.36765	16.105	15.996	16.363	0					18	7	3	0	0	0	0.054723	1	4546	4546		87.696	0	1	1237600			18242	9907	11472	11525	18520	18520					0.1095805762481632
ISKSHVSTTY	10	Unmodified	_ISKSHVSTTY_					0	0	0			REV__ENST00000392981.6_1_3:142133056-142136003:-|nuORF	REV__ENST00000392981.6_1_3:142133056-142136003:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.793701171875	2	561.793121	1121.57169	0.47023	0.00026417	0.036391	2.0444E-05	0.50662	0.00028462	561.7931119585428	28.678	0.52666	28.678	28.319	28.846	0					44	13	4	0	0	0	0.21754	1	10041	10041		77.318	20.597	1	4865400	+		18243	18839	11473	11526	18521	18521					0.0157652026375672
ISKVVQVCCI	10	Carbamidomethyl (C)	_ISKVVQVCC(Carbamidomethyl (C))I_	ISKVVQVC(0.032)C(0.968)I		ISKVVQVC(-15)C(15)I		0	1	0			REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.87615966796875	3	383.543722	1147.60934	-2.162	-0.00082922	-2.754	-0.0010563	-4.916	-0.0018855	383.5426565635247	30.684	0.29247	30.684	30.572	30.864	0					12	8	2	0	0	0	0.52275	1	10458	10458		42.864	8.6917	2	124710	+		18244	20062	11474	11527	18522	18522	707				0.04143571933354906
ISKYLDALN	9	Unmodified	_ISKYLDALN_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.788330078125	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.973	1	38.973	38.473	39.473	0								0	0	0	0.22075	1	12683	12683		47.96	8.7067	1				18245	5894	11475	11528	18523	18523					0.04370323240414109
ISLAQNINI	9	Unmodified	_ISLAQNINI_					0	0	0			REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7890930175781	2	493.287474	984.560395	-0.50136	-0.00024732	0.80426	0.00039673	0.3029	0.00014942	493.28844934899934	41.548	0.10038	41.548	41.46	41.561	0					6	4	2	0	0	0	0.25716	1	15787	15787		54.776	7.119	1	31792	+		18246	16982	11476	11529	18524	18524					0.06749742960278127
ISLCHSSNDK	10	Carbamidomethyl (C)	_ISLC(Carbamidomethyl (C))HSSNDK_	ISLC(1)HSSNDK		ISLC(40)HSSNDK		0	1	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	387.5171203613281	3	387.517	1159.52917	0.55226	0.00021401	-0.057039	-2.2103E-05	0.49522	0.00019191	387.51695751860314	29.099	0.55583	29.099	29.005	29.561	0					47	20	5	0	0	0	0.54861	1	9133	9133		40.058	40.058	1	2114100			18247	1200	11477	11530	18525	18525	42				-0.04421198136151361
ISLDNAGKI	9	Unmodified	_ISLDNAGKI_					0	0	0		ZFX|p.D218N|1|0.63|ENSG00000005889|chrX:24207331-24207331|G/A|missense_variant	ZFX|p.D218N|1|0.63|ENSG00000005889|chrX:24207331-24207331|G/A|missense_variant	ZFX|p.D218N|1|0.63|ENSG00000005889|chrX:24207331-24207331|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7665100097656	2	465.766374	929.518196	-0.17447	-8.1263E-05	-0.56179	-0.00026166	-0.73626	-0.00034293	465.76626705895694	21.828	0.19303	21.828	21.736	21.929	0					9	4	3	0	0	0	0.15163	1	6388	6388		67.494	1.0644	1	769460			18248	23139	11478	11531	18526	18526					0.05061767551910634
ISLEHIFY	8	Unmodified	_ISLEHIFY_					0	0	0		PRSS16|p.R132I|1|0.38|ENSG00000112812|chr6:27249157-27249157|G/T|missense_variant	PRSS16|p.R132I|1|0.38|ENSG00000112812|chr6:27249157-27249157|G/T|missense_variant	PRSS16|p.R132I|1|0.38|ENSG00000112812|chr6:27249157-27249157|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.26947021484375	2	511.271293	1020.52803	-0.0032411	-1.6571E-06	-4.2134	-0.0021542	-4.2167	-0.0021559	511.26913946516686	35.266	0.24079	35.266	35.142	35.383	0					9	6	2	0	0	0	0.64096	1	13219	13219		42.474	1.6963	1	145940			18249	11979	11479	11532	18527	18527					0.01858955557270292
ISLFDVRCCCH	11	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))ISLFDVRC(Carbamidomethyl (C))CCH_	ISLFDVRC(0.998)C(0.001)C(0.001)H		ISLFDVRC(29)C(-29)C(-29)H		1	1	0			REV__ENST00000317881.8_1_X:118604375-118604432:+|nuORF	REV__ENST00000317881.8_1_X:118604375-118604432:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	697.805908203125	2	697.804325	1393.5941	2.2039	0.0015379	-0.14596	-0.00010185	2.0579	0.001436	697.8042843165773	16.965	0.75554	16.965	16.859	17.615	0					40	15	5	0	0	0	0.37008	1	4816	4816		54.776	20.855	3	5527500	+		18250	18312	11480	11533	18528	18528	645				-0.08695662926106706
ISLGHGHI	8	Unmodified	_ISLGHGHI_					0	0	0		ENST00000553281.5_1_14:89088194-89171927:-|nuORF;EML5|p.G1621Efs*19|1|0.2|ENSG00000165521|chr14:88624982-88624982|C/-|frameshift_variant;EML5|p.N1682Mfs*7|1|0.04|ENSG00000165521|chr14:88621246-88621246|T/-|frameshift_variant;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant;nc|ENSG00000165521|Q05BV3-2|EML5	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.2351379394531	2	417.235045	832.455536	-0.054512	-2.2744E-05	0.23606	9.8494E-05	0.18155	7.5749E-05	417.23514778491096	16.557	0.17058	16.557	16.476	16.646	0					7	4	2	0	0	0	0.79462	1	3963	3963		16.705	2.0409	1	281130			18251	912	11481	11534	18529	18529					0.03260666274366031
ISLGNVIGSA	10	Unmodified	_ISLGNVIGSA_					0	0	0			REV__tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	REV__tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.76605224609375	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.512	1	27.512	27.012	28.012	0								0	0	0	0.074065	1	9855	9855		85.161	0.34353	1		+		18252	21938	11482	11535	18530	18530					0.05061767551910634
ISLKEIQVL	9	Unmodified	_ISLKEIQVL_					0	0	0		nc|ENSG00000078699|O43439|CBFA2T2	nc|ENSG00000078699|O43439|CBFA2T2	nc|ENSG00000078699|O43439|CBFA2T2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.8296508789062	2	521.828975	1041.6434	1.0712	0.000559	-0.21819	-0.00011386	0.85305	0.00044515	521.828640942101	31.676	0.1135	31.676	31.622	31.736	0					4	2	2	0	0	0	0.13267	1	11983	11983		71.877	0	1	85426			18253	11441	11483	11536	18531	18531					0.12424059688282796
ISLKQAPLVH	10	Unmodified	_ISLKQAPLVH_					0	0	0		nc|ENSG00000122705|P09496-5|CLTA;ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	nc|ENSG00000122705|P09496-5|CLTA	nc|ENSG00000122705|P09496-5|CLTA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.22882080078125	3	369.229119	1104.66553	-0.2248	-8.3001E-05	0.3325	0.00012277	0.10771	3.9769E-05	369.22909667239395	30.351	0.21242	30.351	30.245	30.458	0					6	4	2	0	0	0	0.41384	1	11216	11216		54.722	23.088	1	195570			18254	3282	11484	11537	18532	18532					0.11738284156695045
ISLKQAPLVH	10	Unmodified	_ISLKQAPLVH_					0	0	0		nc|ENSG00000122705|P09496-5|CLTA;ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	nc|ENSG00000122705|P09496-5|CLTA	nc|ENSG00000122705|P09496-5|CLTA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3401489257812	2	553.340041	1104.66553	0.87199	0.0004825	-0.12197	-6.7493E-05	0.75001	0.00041501	553.3401047094076	30.301	0.2608	30.301	30.197	30.458	0					7	5	2	0	0	0	0.16075	1	11217	11217		72.879	43.709	1	96666			18255	3282	11484	11537	18533	18533					0.11738284156695045
ISLLNITEP	9	Unmodified	_ISLLNITEP_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;NOL9|p.S460Afs*5|1|0.22|ENSG00000162408|chr1:6532620-6532620|T/-|frameshift_variant	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2950439453125	2	500.289682	998.564812	2.92	0.0014608	4.336	0.0021692	7.256	0.0036301	500.2917980689333	36.992	0.85667	36.992	36.395	37.252	0					38	17	4	0	0	0	0.22837	1	14322	14322		58.23	12.258	1	1308600			18256	5459	11485	11538	18534	18534					0.06547207383175646
ISLLVGGIGV	10	Unmodified	_ISLLVGGIGV_					0	0	0		tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2972717285156	2	464.29731	926.580068	0.71466	0.00033181	2.2141	0.001028	2.9288	0.0013598	464.2966785666062	38.585	0.21488	38.585	38.48	38.695	0					11	4	4	0	0	0	0.57532	1	15196	15196		37.159	1.5408	1	218600			18257	22608	11486	11539	18535	18535					0.11384118971056978
ISLNFLHLT	9	Unmodified	_ISLNFLHLT_					0	0	0		ENST00000361523.8_1_17:40962415-40962475:-|nuORF	ENST00000361523.8_1_17:40962415-40962475:-|nuORF	ENST00000361523.8_1_17:40962415-40962475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.2060852050781	3	353.206203	1056.59678	1.4451	0.0005104	-1.5173	-0.00053592	-0.072252	-2.552E-05	353.20561222301956	31.302	0.26359	31.302	31.174	31.438	0					15	6	3	0	0	0	0.54267	1	11783	11783		42.864	20.904	1	403340			18258	8873	11487	11540	18536	18536					0.0707461985698501
ISLPLNREP	9	Unmodified	_ISLPLNREP_					0	0	0			REV__ENSG00000155465|ENST00000674313|SLC7A7	REV__ENSG00000155465|ENST00000674313|SLC7A7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.8007202148438	2	519.800749	1037.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.426	1	30.426	29.926	30.926	0								0	0	0	0.29774	1	10360	10360		35.618	1.4457	1		+		18259	15596	11488	11541	18537	18537					0.06965431851608628
ISLRTTALE	9	Unmodified	_ISLRTTALE_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.29302978515625	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.688	1	13.688	13.188	14.188	0								0	0	0	0.069826	1	3237	3237		45.972	0	1				18260	1931	11489	11542	18538	18538					0.06977725614706287
ISLYINNPL	9	Unmodified	_ISLYINNPL_					0	0	0		ENSG00000100271|ENST00000266254|TTLL1;nc|ENSG00000100271|O95922-4|TTLL1;TTLL1|p.V179M|1|0.32|ENSG00000100271|chr22:43064293-43064293|C/T|missense_variant	ENSG00000100271|ENST00000266254|TTLL1	ENSG00000100271|ENST00000266254|TTLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7994384765625	2	523.797675	1045.5808	3.4229	0.0017929	-0.38097	-0.00019955	3.0419	0.0015934	523.7974734586626	26.679	0.41474	26.679	26.57	26.985	0					18	8	3	0	0	0	0.1236	1	9441	9441		73.975	73.975	1	2815700			18261	1993	11490	11543	18539	18539					0.059829136200733046
ISMDLQLTNK	10	Unmodified	_ISMDLQLTNK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.810791015625	2	581.810456	1161.60636	0.60391	0.00035136	0.36814	0.00021419	0.97205	0.00056555	581.8106345168364	38.702	0.098919	38.702	38.661	38.76	0					9	5	2	0	0	0	0.46989	1	12614	12614		48.602	2.1448	1	90408			18262	1994	11491	11544	18540	18540					0.032020200801980536
ISMDLQLTNK	10	Unmodified	_ISMDLQLTNK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.81103515625	2	581.810456	1161.60636	-0.015459	-8.9944E-06	0.44609	0.00025954	0.43063	0.00025055	581.8106977607263	39.033	0.1904	39.033	38.941	39.131	0					16	7	3	0	0	0	0.0012279	1	14839	14839		180.09	67.983	1	439310			18263	1994	11491	11544	18541	18541					0.032020200801980536
ISMDLQLTNK	10	Unmodified	_ISMDLQLTNK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.8106689453125	2	581.810456	1161.60636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.99	1	38.99	38.49	39.49	0								0	0	0	0.0081344	1	15318	15318		139.38	48.781	1				18264	1994	11491	11544	18542	18542					0.032020200801980536
ISMDLQLTNK	10	Unmodified	_ISMDLQLTNK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.8110961914062	2	581.810456	1161.60636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.788	1	38.788	38.288	39.288	0								0	0	0	0.33147	1	13864	13864		45.908	5.8499	1				18265	1994	11491	11544	18543	18543					0.032020200801980536
ISMDLQLTNK	10	Unmodified	_ISMDLQLTNK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.8106689453125	2	581.810456	1161.60636	3.2362	0.0018829	-3.202	-0.0018629	0.034243	1.9923E-05	581.8086493546449	38.962	0.25364	38.962	38.856	39.11	0					13	5	3	0	0	0	0.019305	1	15370	15370		125.68	16.243	1	577450			18266	1994	11491	11544	18544	18544					0.032020200801980536
ISMEFVWLA	9	Unmodified	_ISMEFVWLA_					0	0	0			REV__ENST00000297107.10_1_5:153797146-153797353:+|nuORF	REV__ENST00000297107.10_1_5:153797146-153797353:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2821044921875	2	548.280803	1094.54705	0.40766	0.00022351	2.8974	0.0015886	3.305	0.0018121	548.2828820637351	38.025	0.093067	38.025	37.987	38.08	0					8	5	2	0	0	0	0.41354	1	12838	12838		40.573	1.7665	1	46545	+		18267	18186	11492	11545	18545	18545					0.003561688567060628
ISMHPIIRK	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ISM(Oxidation (M))HPIIRK_		ISM(1)HPIIRK		ISM(51)HPIIRK	1	0	1		ENST00000525473.1_1_11:71518673-71529252:-|nuORF;nc|ENSG00000214534|A8MWA4|ZNF705EP;ENSG00000215356|ENST00000400120|ZNF705B;ENSG00000215343|ENST00000400085|ZNF705D	ENST00000525473.1_1_11:71518673-71529252:-|nuORF	ENST00000525473.1_1_11:71518673-71529252:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.8292846679688	2	576.831526	1151.6485	0.023333	1.3459E-05	-4.4555	-0.0025701	-4.4322	-0.0025566	576.8290446149621	15.693	0.078476	15.693	15.646	15.725	0					5	3	2	0	0	0	0.2873	1	3629	3629		51.335	7.6847	1	60252			18268	7830	11493	11546	18546	18546		314			0.07874040279239125
ISMPDLAPLS	10	Unmodified	_ISMPDLAPLS_					0	0	0			REV__TSHZ3|p.M749I|1|0.3|ENSG00000121297|chr19:31277546-31277546|C/T|missense_variant	REV__TSHZ3|p.M749I|1|0.3|ENSG00000121297|chr19:31277546-31277546|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7767333984375	2	522.275718	1042.53688	-1.308	-0.00068314	1.2838	0.0006705	-0.0242	-1.2639E-05	522.2753876788878	32.368	0.18233	32.368	32.265	32.447	0					9	5	2	0	0	0	0.41335	1	11248	11248		54.776	0	1	99188	+		18269	22240	11494	11547	18547	18547					0.017315611314188573
ISMQHFKLQ	9	Unmodified	_ISMQHFKLQ_					0	0	0			REV__ENST00000465952.5_1_13:31192116-31195964:+|nuORF	REV__ENST00000465952.5_1_13:31192116-31195964:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3043212890625	2	566.302601	1130.59065	1.2006	0.00067988	1.362	0.00077128	2.5625	0.0014512	566.3035035824417	24.856	0.1063	24.856	24.783	24.889	0					5	3	2	0	0	0	0.35021	1	7407	7407		45.972	0	1	64075	+		18270	19414	11495	11548	18548	18548					0.030577783538092262
ISMVHQFRL	9	Unmodified	_ISMVHQFRL_					0	0	0			REV__nc|ENSG00000124532|Q9HD23-2|MRS2	REV__nc|ENSG00000124532|Q9HD23-2|MRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.5436096191406	3	377.542821	1129.60663	0.80902	0.00030544	1.9075	0.00072016	2.7165	0.0010256	377.5433608047005	23.794	0.4967	23.794	23.691	24.188	0					18	11	2	0	0	0	0.55379	1	7940	7940		26.693	1.1189	1	476130	+		18271	14402	11496	11549	18549	18549					0.04701484590736982
ISNANPVGFS	10	Unmodified	_ISNANPVGFS_					0	0	0			REV__ENST00000460658.5_1_22:31492537-31495228:+|nuORF	REV__ENST00000460658.5_1_22:31492537-31495228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2538757324219	2	503.253631	1004.49271	-0.052985	-2.6665E-05	0.74917	0.00037702	0.69618	0.00035036	503.25383253127166	26.446	0.15083	26.446	26.38	26.531	0					8	5	2	0	0	0	0.41384	1	8044	8044		54.722	3.5297	1	79730	+		18272	16960	11497	11550	18550	18550					-0.009357069705174581
ISNDDLLVV	9	Unmodified	_ISNDDLLVV_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2712707519531	2	494.27149	986.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.868	1	31.868	31.368	32.368	0								0	0	0	0.24544	1	10265	10265		44.377	10.205	1				18273	11546	11498	11551	18551	18551					0.03462330486490828
ISNEVLLSLPR	11	Unmodified	_ISNEVLLSLPR_					0	0	0		ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000553204.5_1_12:49497576-49504308:-|nuORF;LMBR1L|p.L118Sfs*39|1|0.36|ENSG00000139636|chr12:49104532-49104532|A/-|frameshift_variant	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2469177246094	3	414.246839	1239.71869	0.39321	0.00016289	-0.40913	-0.00016948	-0.015917	-6.5934E-06	414.24666140663993	27.447	0.41206	27.447	27.237	27.649	0					28	8	5	0	0	0	0.62791	1	9907	9907		34.501	4.3617	1	2092300			18274	4340	11499	11552	18552	18552					0.10841617148707883
ISNGHLYL	8	Unmodified	_ISNGHLYL_					0	0	0			REV__ENST00000539587.5_1_11:71791910-71806563:+|nuORF	REV__ENST00000539587.5_1_11:71791910-71806563:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7475280761719	2	458.747985	915.481417	0.88012	0.00040375	-1.8383	-0.00084331	-0.95816	-0.00043956	458.7470282907524	40.709	0.50059	40.709	40.392	40.892	0					17	9	3	0	0	0	0.29152	1	16172	16172		85.359	11.104	1	764280	+		18275	16967	11500	11553	18553	18553					0.020295157259852203
ISNGSALVV	9	Unmodified	_ISNGSALVV_					0	0	0		nc|ENSG00000133107|Q9UBN4-6|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2477722167969	2	430.247818	858.481082	0.18358	7.8985E-05	-0.45623	-0.00019629	-0.27265	-0.00011731	430.2477760253331	25.305	0.23564	25.305	25.186	25.422	0					11	7	2	0	0	0	0.25716	1	7608	7608		54.776	3.4409	1	146290			18276	3839	11501	11554	18554	18554					0.04618096006140604
ISNLDVGGEY	10	Unmodified	_ISNLDVGGEY_					0	0	0			REV__NSMAF|p.R751Dfs*16|1|0.2|ENSG00000035681|chr8:58587662-58587662|T/-|frameshift_variant	REV__NSMAF|p.R751Dfs*16|1|0.2|ENSG00000035681|chr8:58587662-58587662|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7545166015625	2	533.756204	1065.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.118	1	36.118	35.618	36.618	0								0	0	0	0.30913	1	12232	12232		49.442	3.4693	1		+		18277	12982	11502	11555	18555	18555					-0.03227447898552782
ISNLPTVKK	9	Unmodified	_ISNLPTVKK_					0	0	0		ENSG00000182793|ENST00000370989|GSTA5;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000174156|ENST00000211122|GSTA3;GSTA1|p.L198P|1|0.14|ENSG00000243955|chr6:52791934-52791934|A/G|missense_variant;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000182793|ENST00000370989|GSTA5;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.3135986328125	2	500.313492	998.612431	-0.15745	-7.8773E-05	0.38907	0.00019465	0.23162	0.00011588	500.3136302266831	22.591	0.52955	22.591	22.197	22.726	0					29	12	4	0	0	0	0.12278	1	7335	7335		74.165	12.058	1	867230			18278	6921;7964	11503	11556	18556	18556					0.11306906374045411
ISNLPTVKK	9	Unmodified	_ISNLPTVKK_					0	0	0		ENSG00000182793|ENST00000370989|GSTA5;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000174156|ENST00000211122|GSTA3;GSTA1|p.L198P|1|0.14|ENSG00000243955|chr6:52791934-52791934|A/G|missense_variant;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000182793|ENST00000370989|GSTA5;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.3133850097656	2	500.313492	998.612431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.303	1	22.303	21.803	22.803	0								0	0	0	0.27521	1	6543	6543		40.058	7.2458	1				18279	6921;7964	11503	11556	18557	18557					0.11306906374045411
ISNLPTVKK	9	Unmodified	_ISNLPTVKK_					0	0	0		ENSG00000182793|ENST00000370989|GSTA5;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000174156|ENST00000211122|GSTA3;GSTA1|p.L198P|1|0.14|ENSG00000243955|chr6:52791934-52791934|A/G|missense_variant;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000182793|ENST00000370989|GSTA5;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.3128356933594	2	500.313492	998.612431	-2.14	-0.0010707	1.8125	0.00090683	-0.32746	-0.00016383	500.3145009015855	22.343	0.35873	22.343	22.063	22.422	0					15	8	2	0	0	0	0.22823	1	6622	6622		58.246	7.0535	1	110450			18280	6921;7964	11503	11556	18558	18558					0.11306906374045411
ISNLPTVKK	9	Unmodified	_ISNLPTVKK_					0	0	0		ENSG00000182793|ENST00000370989|GSTA5;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000174156|ENST00000211122|GSTA3;GSTA1|p.L198P|1|0.14|ENSG00000243955|chr6:52791934-52791934|A/G|missense_variant;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000182793|ENST00000370989|GSTA5;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.8780517578125	3	333.878087	998.612431	-0.0094678	-3.1611E-06	-0.15218	-5.081E-05	-0.16165	-5.3971E-05	333.8780158312822	22.498	0.56783	22.498	22.037	22.605	0					28	11	3	0	0	0	0.16806	1	7455	7455		72.243	26.335	1	678110			18281	6921;7964	11503	11556	18559	18559					0.11306906374045411
ISNLQKLIA	9	Unmodified	_ISNLQKLIA_					0	0	0		LRRC49|p.S138A|1|0.23|ENSG00000137821|chr15:70904667-70904667|T/G|missense_variant	LRRC49|p.S138A|1|0.23|ENSG00000137821|chr15:70904667-70904667|T/G|missense_variant	LRRC49|p.S138A|1|0.23|ENSG00000137821|chr15:70904667-70904667|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.3132629394531	2	500.313492	998.612431	-0.61523	-0.00030781	0.52543	0.00026288	-0.089804	-4.493E-05	500.3136957103328	22.492	0.41384	22.492	22.136	22.55	0					20	8	3	0	0	0	0.1424	1	7585	7585		69.628	7.5202	1	314210			18282	11328	11504	11557	18560	18560					0.11306906374045411
ISNMDLSRS	9	Unmodified	_ISNMDLSRS_					0	0	0			REV__ENST00000396270.3_1_12:69099864-69100302:+|nuORF	REV__ENST00000396270.3_1_12:69099864-69100302:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.75042724609375	2	511.750398	1021.48624	1.0283	0.00052622	-1.2234	-0.00062608	-0.19515	-9.9867E-05	511.74990398639045	29.802	0.40396	29.802	29.694	30.098	0					20	10	3	0	0	0	0.16806	1	10695	10695		65.465	2.0389	1	565180	+		18283	18897	11505	11558	18561	18561					-0.023639681935492263
ISNPGWLCL	9	Unmodified	_ISNPGWLCL_					0	0	0			REV__ENST00000494873.1_1_1:51702296-51736909:+|nuORF	REV__ENST00000494873.1_1_1:51702296-51736909:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7586975097656	2	501.757495	1001.50044	2.9249	0.0014676	-0.92299	-0.00046312	2.002	0.0010045	501.7571204289984	30.755	0.36748	30.755	30.595	30.962	0					23	7	6	0	0	0	0.16002	1	11407	11407		66.429	66.429	1	4360400	+		18284	19756	11506	11559	18562	18562					-0.00025270974606428354
ISNQPIPE	8	Unmodified	_ISNQPIPE_					0	0	0			REV__ENSG00000174130|ENST00000508254|TLR6	REV__ENSG00000174130|ENST00000508254|TLR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2370910644531	2	449.23745	896.460347	-0.093465	-4.1988E-05	-0.24367	-0.00010947	-0.33713	-0.00015145	449.23734357907387	20.092	0.21796	20.092	20.028	20.246	0					9	4	3	0	0	0	0.46905	1	6467	6467		63.306	4.5243	1	339460	+		18285	16548	11507	11560	18563	18563					0.0079750562646268
ISNQVVSQKP	10	Unmodified	_ISNQVVSQKP_					0	0	0		nc|ENSG00000164074|Q0P651-4|ABHD18;nc|ENSG00000164074|Q0P651-3|ABHD18;nc|ENSG00000164074|Q0P651-2|ABHD18;ENST00000473040.6_1_4:128905516-128956965:+|nuORF;nc|ENSG00000164074|Q0P651|ABHD18;ENSG00000164074|ENST00000645843|ABHD18	nc|ENSG00000164074|Q0P651-4|ABHD18	nc|ENSG00000164074|Q0P651-4|ABHD18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3095703125	2	550.308938	1098.60332	0.54745	0.00030127	0.29821	0.00016411	0.84566	0.00046538	550.3090830092282	22.557	0.35529	22.557	22.371	22.726	0					23	8	4	0	0	0	0.20981	1	7330	7330		78.264	0.7305	1	1504300			18286	5647	11508	11561	18564	18564					0.05796513017708094
ISNSKGQKTK	10	Unmodified	_ISNSKGQKTK_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.2132263183594	3	364.212017	1089.61422	3.1397	0.0011435	0.31769	0.00011571	3.4574	0.0012592	364.2120938575618	17.218	0.40812	17.218	17.056	17.464	0					18	8	4	0	0	0	0.39647	1	4936	4936		56.632	10.175	1	2396300			18287	3447	11509	11562	18565	18565					0.07299915391990908
ISNSSTLGGQ	10	Unmodified	_ISNSSTLGGQ_					0	0	0		nc|ENSG00000137177|Q9H1H9-5|KIF13A	nc|ENSG00000137177|Q9H1H9-5|KIF13A	nc|ENSG00000137177|Q9H1H9-5|KIF13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2409973144531	2	482.240721	962.466889	-0.28438	-0.00013714	0.54835	0.00026444	0.26398	0.0001273	482.2411267187108	17.517	0.16802	17.517	17.441	17.609	0					9	5	2	0	0	0	0.39827	1	4386	4386		56.434	1.7114	1	89413			18288	11543	11510	11563	18566	18566					-0.015846012127894937
ISNSTLLKD	9	Unmodified	_ISNSTLLKD_					0	0	0		CD96|p.V223Efs*38|1|0.05|ENSG00000153283|chr3:111579102-111579103|-/AGGAAGAA|frameshift_variant;ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	CD96|p.V223Efs*38|1|0.05|ENSG00000153283|chr3:111579102-111579103|-/AGGAAGAA|frameshift_variant	CD96|p.V223Efs*38|1|0.05|ENSG00000153283|chr3:111579102-111579103|-/AGGAAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7750244140625	2	495.776939	989.539325	0.53844	0.00026695	-1.3701	-0.00067925	-0.83164	-0.00041231	495.77640913231915	25.27	0.58205	25.27	25.03	25.612	0					39	13	4	0	0	0	0.4966	1	8681	8681		32.812	1.2826	1	3860800			18289	432	11511	11564	18567	18567					0.0441373286076896
ISNVVLDHH	9	Unmodified	_ISNVVLDHH_					0	0	0			REV__tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	REV__tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2733154296875	2	517.274898	1032.53524	0.030381	1.5716E-05	-3.3061	-0.0017102	-3.2757	-0.0016944	517.2740041640927	32.345	0.11861	32.345	32.298	32.417	0					7	5	2	0	0	0	0.48389	1	10792	10792		34.173	1.3601	1	45993	+		18290	21928	11512	11565	18568	18568					0.02027688157704688
ISNWTSAI	8	Unmodified	_ISNWTSAI_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.2317810058594	2	446.232168	890.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.324	1	40.324	39.824	40.824	0								0	0	0	1.7419	1	14338	14338		63.306	0.32785	1		+		18291	16786	11513	11566	18569	18569					0.0001752297204120623
ISNWTVSY	8	Unmodified	_ISNWTVSY_					0	0	0		nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF;nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-2|TMEM63B	nc|ENSG00000137216|Q5T3F8-2|TMEM63B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2351379394531	2	485.23745	968.460347	-0.091189	-4.4248E-05	-2.2729	-0.0011029	-2.364	-0.0011471	485.2360281586917	32.163	0.57553	32.163	31.81	32.385	0					28	12	3	0	0	0	0.32815	1	12138	12138		79.451	2.6044	1	128180			18292	4151	11514	11567	18570	18570					-0.025144943735199377
ISPATPNMQ	9	Unmodified	_ISPATPNMQ_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7383728027344	2	479.73676	957.458967	2.3025	0.0011046	0.81318	0.00039011	3.1156	0.0014947	479.73718903359037	37.244	0.36456	37.244	37.137	37.501	0					18	7	4	0	0	0	0.22377	1	14555	14555		58.782	5.4305	1	1009200			18293	411;11664	11515	11568	18571	18571					-0.021464517339381928
ISPFFLPDP	9	Unmodified	_ISPFFLPDP_					0	0	0			REV__ENST00000609401.5_1_X:62647883-62647997:-|nuORF	REV__ENST00000609401.5_1_X:62647883-62647997:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2764892578125	2	516.773668	1031.53278	-0.0067712	-3.4992E-06	0.16322	8.435E-05	0.15645	8.0851E-05	516.7738561167123	31	0.31118	31	30.806	31.117	0					15	11	2	0	0	0	0.53083	1	10211	10211		29.15	2.4566	1	48384	+		18294	20633	11516	11569	18572	18572					0.018278397000358382
ISPHGNAL	8	Unmodified	_ISPHGNAL_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.7190856933594	2	404.719227	807.423902	-0.11298	-4.5727E-05	-0.18538	-7.5025E-05	-0.29836	-0.00012075	404.7191754214947	21.939	0.15664	21.939	21.867	22.023	0					7	4	2	0	0	0	0.26534	1	6116	6116		94.006	25.522	1	162320			18295	5938	11517	11570	18573	18573					0.01248673520410648
ISPHGNAL	8	Unmodified	_ISPHGNAL_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.71917724609375	2	404.719227	807.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.264	1	22.264	21.764	22.764	0								0	0	0	1.7419	1	7205	7205		108.09	44.781	1				18296	5938	11517	11570	18574	18574					0.01248673520410648
ISPHGNAL	8	Unmodified	_ISPHGNAL_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.71875	2	404.719227	807.423902	-0.87318	-0.00035339	-0.66704	-0.00026996	-1.5402	-0.00062336	404.71911252382495	21.976	0.097078	21.976	21.909	22.007	0					6	3	2	0	0	0	0.35045	1	6389	6389		76.774	24.475	1	54585			18297	5938	11517	11570	18575	18575					0.01248673520410648
ISPHGNAL	8	Unmodified	_ISPHGNAL_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.71923828125	2	404.719227	807.423902	0.41068	0.00016621	-0.42785	-0.00017316	-0.017169	-6.9487E-06	404.7191213880009	22.145	0.16665	22.145	22.086	22.253	0					5	3	2	0	0	0	0.25102	1	7462	7462		99.375	33.572	1	225500			18298	5938	11517	11570	18576	18576					0.01248673520410648
ISPHGNAL	8	Unmodified	_ISPHGNAL_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	404.718994140625	2	404.719227	807.423902	-2.2734	-0.00092007	1.7917	0.00072515	-0.48162	-0.00019492	404.71998990635876	22.029	0.14553	22.029	21.929	22.074	0					6	3	2	0	0	0	0.46905	1	6499	6499		63.306	5.495	1	147980			18299	5938	11517	11570	18577	18577					0.01248673520410648
ISPHGNAL	8	Unmodified	_ISPHGNAL_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.7190856933594	2	404.719227	807.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.191	1	22.191	21.691	22.691	0								0	0	0	1.7419	1	7341	7341		111.65	31.709	1				18300	5938	11517	11570	18578	18578					0.01248673520410648
ISPLPRPAQ	9	Unmodified	_ISPLPRPAQ_					0	0	0		ENST00000355472.9_1_5:176869404-176869623:+|nuORF	ENST00000355472.9_1_5:176869404-176869623:+|nuORF	ENST00000355472.9_1_5:176869404-176869623:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7900085449219	2	489.790184	977.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.63	1	21.63	21.13	22.13	0								0	0	0	0.27521	1	7202	7202		32.812	0	1				18301	8797	11518	11571	18579	18579					0.07613466542750302
ISPMNAQL	8	Unmodified	_ISPMNAQL_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2272644042969	2	437.228571	872.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.706	1	40.706	40.206	41.206	0								0	0	0	1.7419	1	16183	16183		45.952	1.8352	1		+		18302	14775	11519	11572	18580	18580					0.0012646709996033678
ISPNGNPL	8	Unmodified	_ISPNGNPL_					0	0	0			REV__RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant	REV__RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.2189025878906	2	406.21906	810.423567	-0.52965	-0.00021516	0.43428	0.00017641	-0.095372	-3.8742E-05	406.2191882592269	24.303	0.28882	24.303	24.161	24.45	0					13	6	3	0	0	0	0.49216	1	8172	8172		60.972	5.4677	1	1360900	+		18303	16859	11520	11573	18581	18581					0.0107725380055399
ISPPPTANL	9	Unmodified	_ISPPPTANL_					0	0	0		nc|ENSG00000169398|Q05397-6|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-6|PTK2	nc|ENSG00000169398|Q05397-6|PTK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2556457519531	2	455.255643	908.496732	0.72131	0.00032838	-1.2951	-0.00058961	-0.5738	-0.00026123	455.25504690382604	37.089	0.73855	37.089	36.532	37.271	0					32	22	2	0	0	0	0.44593	1	14383	14383		37.812	3.639	1	75368			18304	6161	11521	11574	18582	18582					0.03882382523170236
ISPSFDNIKYD	11	Unmodified	_ISPSFDNIKYD_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	649.8182373046875	2	649.816793	1297.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.119	1	29.119	28.619	29.619	0								0	0	0	0.43542	1	10747	10747		29.17	0.59333	1				18305	2621	11522	11575	18583	18583					-0.01787245255900416
ISPSRTEAL	9	Unmodified	_ISPSRTEAL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32629660-32630092:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2691955566406	2	487.269281	972.52401	-0.0031923	-1.5555E-06	-0.48961	-0.00023857	-0.4928	-0.00024013	487.2690598471382	25.183	0.49418	25.183	24.977	25.471	0					43	16	4	0	0	0	0.19952	1	7505	7505		61.691	10.499	1	3375900			18306	7898;11663	11523	11576	18584	18584					0.03664866063570571
ISPSRTEAL	9	Unmodified	_ISPSRTEAL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32629660-32630092:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2689514160156	2	487.269281	972.52401	-0.3391	-0.00016523	-0.41302	-0.00020125	-0.75212	-0.00036648	487.26910932104175	25.449	0.73454	25.449	25.181	25.916	0					46	15	5	0	0	0	0.070005	1	8683	8683		88.177	22.374	1	17551000			18307	7898;11663	11523	11576	18585	18585					0.03664866063570571
ISPSVSRG	8	Unmodified	_ISPSVSRG_					0	0	0		ENST00000452721.2_1_12:110815522-110815708:-|nuORF	ENST00000452721.2_1_12:110815522-110815708:-|nuORF	ENST00000452721.2_1_12:110815522-110815708:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.72442626953125	2	401.72451	801.434466	0.88334	0.00035486	-1.6019	-0.00064352	-0.71856	-0.00028866	401.72401464267824	19.621	0.21289	19.621	19.463	19.676	0					8	4	3	0	0	0	0.66095	1	6245	6245		39.253	5.0803	1	520810			18308	9660	11524	11577	18586	18586					0.025806561748595414
ISPTLGSH	8	Unmodified	_ISPTLGSH_					0	0	0		HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|10|3|sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|10|3|sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|10|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.21881103515625	2	406.21906	810.423567	-0.12127	-4.9262E-05	0.26997	0.00010967	0.1487	6.0406E-05	406.21916684691274	24.009	0.23949	24.009	23.89	24.129	0					13	7	3	0	0	0	0.52345	1	7017	7017		57.811	2.3071	1	176860			18309	11195	11525	11578	18587	18587					0.010772538005653587
ISPVRTTST	9	Unmodified	_ISPVRTTST_					0	0	0			REV__PLD1|p.M193Cfs*16|1|0.32|ENSG00000075651|chr3:171733473-171733473|T/-|frameshift_variant	REV__PLD1|p.M193Cfs*16|1|0.32|ENSG00000075651|chr3:171733473-171733473|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2712707519531	2	481.269281	960.52401	0.40259	0.00019375	-1.1085	-0.0005335	-0.70594	-0.00033975	481.2687368257775	24.04	0.22918	24.04	23.932	24.161	0					9	5	3	0	0	0	0.59802	1	8086	8086		21.96	0	1	295540	+		18310	13239	11526	11579	18588	18588					0.04216866063552516
ISPVSSVPTY	10	Unmodified	_ISPVSSVPTY_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7816772460938	2	525.279315	1048.54408	1.7745	0.00093213	-0.099734	-5.2388E-05	1.6748	0.00087974	525.278851082085	39.673	0.77856	39.673	39.219	39.998	0					66	27	3	0	0	0	0.52707	1	15533	15533		42.396	0	1	391620	+		18311	15048	11527	11580	18589	18589					0.02174617003538515
ISQAQLLFEN	10	Unmodified	_ISQAQLLFEN_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3;ENST00000583202.5_1_17:61898213-61899202:-|nuORF	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	388.2084045410156	3	388.208273	1161.60299	-0.027161	-1.0544E-05	0.14076	5.4645E-05	0.1136	4.4101E-05	388.20824333301965	23.212	0.37292	23.212	22.962	23.335	0					23	11	3	0	0	0	0.61238	1	6621	6621		32.751	2.1817	1	154220			18312	2539	11528	11581	18590	18590					0.028650932978507626
ISQELVQI	8	Unmodified	_ISQELVQI_					0	0	0			REV__ENSG00000099260|ENST00000263174|PALMD	REV__ENSG00000099260|ENST00000263174|PALMD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2685546875	2	465.26875	928.522947	0.67869	0.00031577	0.30327	0.0001411	0.98196	0.00045688	465.2690262470825	34.207	0.45996	34.207	34.044	34.504	0					19	11	2	0	0	0	0.37144	1	13145	13145		74.255	4.6274	1	363380	+		18313	13489	11529	11582	18591	18591					0.055826516946467564
ISQFNVSLI	9	Unmodified	_ISQFNVSLI_					0	0	0			REV__ENST00000420777.1_1_6:10415003-10415561:+|nuORF	REV__ENST00000420777.1_1_6:10415003-10415561:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.86199951171875	3	340.862325	1019.56515	0.51016	0.00017389	-1.1651	-0.00039714	-0.65493	-0.00022324	340.8620440543454	35.925	0.31606	35.925	35.779	36.095	0					12	8	2	0	0	0	0.38666	1	13522	13522		42.864	6.4175	1	185850	+		18314	19073	11530	11583	18592	18592					0.056146271030456774
ISQHGQLA	8	Unmodified	_ISQHGQLA_					0	0	0		NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.22998046875	2	427.229959	852.445365	-0.48392	-0.00020675	0.49904	0.0002132	0.015115	6.4576E-06	427.23016197811313	14.655	0.11024	14.655	14.553	14.663	0					4	2	2	0	0	0	0.58597	1	3838	3838		51.335	5.3632	1	139800			18315	1430	11531	11584	18593	18593					0.013240585491303136
ISQHNSVI	8	Unmodified	_ISQHNSVI_					0	0	0			REV__ENST00000470861.1_1_9:139571827-139581809:-|nuORF	REV__ENST00000470861.1_1_9:139571827-139581809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2427673339844	2	449.243067	896.47158	0.65495	0.00029423	-1.0884	-0.00048896	-0.43346	-0.00019473	449.2425073493997	31.757	0.35524	31.757	31.605	31.961	0					12	7	2	0	0	0	0.53424	1	12019	12019		56.721	5.3856	1	711730	+		18316	16330	11532	11585	18594	18594					0.019203277206202074
ISQIQKFFF	9	Unmodified	_ISQIQKFFF_					0	0	0		BTBD16|p.F302Lfs*15|1|0.32|ENSG00000138152|chr10:122307298-122307298|T/-|frameshift_variant;BTBD16|p.G367Afs*6|1|0.08|ENSG00000138152|chr10:122332445-122332445|G/-|frameshift_variant;ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	BTBD16|p.F302Lfs*15|1|0.32|ENSG00000138152|chr10:122307298-122307298|T/-|frameshift_variant	BTBD16|p.F302Lfs*15|1|0.32|ENSG00000138152|chr10:122307298-122307298|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.3236694335938	2	579.321317	1156.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.312	1	14.312	13.812	14.812	0								0	0	0	0.35377	1	3531	3531		11.511	0	1				18317	327	11533	11586	18595	18595					0.056031928910670104
ISQKESLKA	9	Unmodified	_ISQKESLKA_					0	0	0		ENSG00000182504|ENST00000341893|CEP97;nc|ENSG00000182504|Q8IW35-2|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF;CEP97|p.K618Nfs*15|1|0.41|ENSG00000182504|chr3:101762516-101762516|A/-|frameshift_variant	ENSG00000182504|ENST00000341893|CEP97	ENSG00000182504|ENST00000341893|CEP97	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2931823730469	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.541	1	13.541	13.041	14.041	0								0	0	0	0.23111	1	2737	2737		31.53	0	1				18318	6899	11534	11587	18596	18596					0.06977725614717656
ISQLGQSTF	9	Unmodified	_ISQLGQSTF_					0	0	0			REV__nc|ENSG00000078900|O15350-6|TP73	REV__nc|ENSG00000078900|O15350-6|TP73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7555236816406	2	490.756007	979.497461	-1.2575	-0.00061711	0.34995	0.00017174	-0.90751	-0.00044537	490.7560537546405	22.328	0.10316	22.328	22.261	22.365	0					5	3	2	0	0	0	0.30841	1	6561	6561		49.536	5.4192	1	58046	+		18319	13276	11535	11588	18597	18597					0.006891771722280282
ISQYLQNSK	9	Unmodified	_ISQYLQNSK_					0	0	0		KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant;ENSG00000128052|ENST00000263923|KDR	KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant	KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7890625	2	540.787838	1079.56112	1.9087	0.0010322	1.3692	0.00074043	3.2778	0.0017726	540.7888217529652	24.828	0.28912	24.828	24.741	25.03	0					20	7	4	0	0	0	0.032383	1	8418	8418		106.68	20.821	1	1176700			18320	3529	11536	11589	18598	18598					0.024525376093151863
ISRITMSAP	9	Unmodified	_ISRITMSAP_					0	0	0		ENSG00000156398|ENST00000369893|SFXN2;SFXN2|p.P265Sfs*27|1|0.05|ENSG00000156398|chr10:102733574-102733575|-/T|frameshift_variant	ENSG00000156398|ENST00000369893|SFXN2	ENSG00000156398|ENST00000369893|SFXN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2667236328125	2	488.268227	974.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.898	1	23.898	23.398	24.398	0								0	0	0	0.14211	1	7240	7240		45.972	5.1941	1				18321	5169	11537	11590	18599	18599					0.033621140541072236
ISRNFSKLL	9	Unmodified	_ISRNFSKLL_					0	0	0		TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant;TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant;TLR8|p.Y950Ifs*8|1|0.35|ENSG00000101916|chrX:12921881-12921882|-/A|frameshift_variant;ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant	TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.8858947753906	3	359.885353	1076.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.551	1	27.551	27.051	28.051	0								0	0	0	0.3368	1	8506	8506		27.882	1.8189	1				18322	2141	11538	11591	18600	18600					0.09897711122607689
ISRNGSTLGLK	11	Unmodified	_ISRNGSTLGLK_					0	0	0		ENSG00000055483|ENST00000449938|USP36;USP36|p.K688Nfs*35|1|0.21|ENSG00000055483|chr17:78806980-78806980|T/-|frameshift_variant	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.3383178710938	2	573.335487	1144.65642	3.3605	0.0019267	0.73681	0.00042244	4.0973	0.0023491	573.3358624760144	31.893	0.82184	31.893	31.633	32.455	0					49	16	5	0	0	0	0.27467	1	11932	11932		65.465	4.4934	1	7331200			18323	1281	11539	11592	18601	18601					0.08987890800381138
ISRPNNTL	8	Unmodified	_ISRPNNTL_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.75665283203125	2	457.756341	913.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.886	1	30.886	30.386	31.386	0								0	0	0	1.7419	1	11592	11592		51.335	0.14276	1		+		18324	14640	11540	11593	18602	18602					0.03792016611953386
ISRSHYSP	8	Unmodified	_ISRSHYSP_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.74029541015625	2	473.740691	945.466829	-0.12149	-5.7554E-05	-0.30404	-0.00014404	-0.42553	-0.00020159	473.7404632749426	21.001	0.31177	21.001	20.88	21.192	0					12	6	3	0	0	0	0.3961	1	6901	6901		71.296	15.791	1	421040			18325	1623	11541	11594	18603	18603					-0.008085564221460118
ISRTVALQ	8	Unmodified	_ISRTVALQ_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2690124511719	2	444.269084	886.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.509	1	19.509	19.009	20.009	0								0	0	0	1.7419	1	5898	5898		93.143	13.431	1		+		18326	15681	11542	11595	18604	18604					0.0758149113436275
ISRTVALQ	8	Unmodified	_ISRTVALQ_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2688903808594	2	444.269084	886.523616	0.78238	0.00034759	-1.6216	-0.00072045	-0.83927	-0.00037286	444.26833681133525	19.386	0.31465	19.386	19.276	19.591	0					11	6	3	0	0	0	0.36488	1	5994	5994		75.043	3.1658	1	978570	+		18327	15681	11542	11595	18605	18605					0.0758149113436275
ISRVDRPRP	9	Unmodified	_ISRVDRPRP_					0	0	0			REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	365.8847351074219	3	365.884235	1094.63087	-0.97859	-0.00035805	0.84736	0.00031004	-0.13124	-4.8017E-05	365.88484996318374	19.089	0.10055	19.089	19.026	19.126	0					5	3	2	0	0	0	0.53064	1	5105	5105		29.17	10.067	1	101000	+		18328	17789	11543	11596	18606	18606					0.08734461068593191
ISRVDRPRP	9	Unmodified	_ISRVDRPRP_					0	0	0			REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.2188415527344	3	365.884235	1094.63087	1.0161	0.00037178	-2.6781	-0.00097987	-1.662	-0.00060809	366.217348425972	19.284	0.56171	19.284	19.179	19.741	0					17	11	2	0	0	0	0.51991	1	5948	5948		30.318	8.632	1	634710	+		18329	17789	11543	11596	18607	18607					0.08734461068593191
ISRVYPTI	8	Unmodified	_ISRVYPTI_					0	0	0			REV__ENSG00000158286|ENST00000377939|RNF207	REV__ENSG00000158286|ENST00000377939|RNF207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.78070068359375	2	474.779285	947.544017	-0.23475	-0.00011146	3.4306	0.0016288	3.1959	0.0015173	474.78054636819326	19.86	0.07938	19.86	19.822	19.901	0					4	2	2	0	0	0	0.72381	1	5223	5223		30.504	1.3541	1	161910	+		18330	15680	11544	11597	18608	18608					0.06814661794192034
ISSCILAVK	9	Unmodified	_ISSCILAVK_					0	0	0			REV__nc|ENSG00000160856|Q96P31-4|FCRL3	REV__nc|ENSG00000160856|Q96P31-4|FCRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2754821777344	2	467.275521	932.536489	0.37516	0.0001753	-0.93561	-0.00043719	-0.56045	-0.00026188	467.2752924456724	39.883	0.17496	39.883	39.821	39.996	0					10	6	2	0	0	0	0.26904	1	15204	15204		53.351	9.2347	1	57295	+		18331	15766	11545	11598	18609	18609					0.06752186202243138
ISSDRSDSE	9	Unmodified	_ISSDRSDSE_					0	0	0		ADD3-MXI1|1|fusion;nc|ENSG00000119950|P50539-4|MXI1;nc|ENSG00000119950|P50539-2|MXI1;nc|ENSG00000119950|P50539|MXI1;ENSG00000119950|ENST00000332674|MXI1	ADD3-MXI1|1|fusion	ADD3-MXI1|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2182312011719	2	498.217443	994.420332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.759	1	39.759	39.259	40.259	0								0	0	0	0.27025	1	15648	15648		40.778	1.5253	1				18332	71	11546	11599	18610	18610					-0.077100858347535
ISSEFLPKG	9	Unmodified	_ISSEFLPKG_					0	0	0			REV__nc|ENSG00000109685|O96028-6|NSD2	REV__nc|ENSG00000109685|O96028-6|NSD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2699279785156	2	489.26875	976.522947	-0.43129	-0.00021102	2.1877	0.0010704	1.7564	0.00085934	489.26997849996474	30.596	0.30972	30.596	30.432	30.742	0					20	7	3	0	0	0	0.19952	1	11042	11042		54.776	0	1	281600	+		18333	13908	11547	11600	18611	18611					0.03374651694673503
ISSGTVSVPI	10	Unmodified	_ISSGTVSVPI_					0	0	0		ENST00000340001.8_1_17:67045563-67045629:-|nuORF	ENST00000340001.8_1_17:67045563-67045629:-|nuORF	ENST00000340001.8_1_17:67045563-67045629:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2748107910156	2	480.274032	958.533512	0.4458	0.0002141	0.12739	6.1181E-05	0.57318	0.00027529	480.2739752489347	31.802	0.34763	31.802	31.501	31.849	0					12	8	2	0	0	0	0.61187	1	11548	11548		32.812	6.1195	1	76978			18334	8724	11548	11601	18612	18612					0.05258634349092972
ISSILNSKI	9	Unmodified	_ISSILNSKI_					0	0	0			REV__ENST00000536163.5_2_7:141385350-141386413:-|nuORF	REV__ENST00000536163.5_2_7:141385350-141386413:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.5341491699219	3	325.534209	973.580796	0.53231	0.00017328	-0.55332	-0.00018012	-0.021011	-6.8397E-06	325.5340109258809	22.471	0.14553	22.471	22.371	22.516	0					7	3	3	0	0	0	0.59802	1	7312	7312		29.17	1.0886	1	476940	+		18335	20103	11549	11602	18613	18613					0.0929491362007866
ISSKSADGENA	11	Unmodified	_ISSKSADGENA_					0	0	0			REV__AKNAD1|p.K314Nfs*22|1|0.2|ENSG00000162641|chr1:108851723-108851723|T/-|frameshift_variant	REV__AKNAD1|p.K314Nfs*22|1|0.2|ENSG00000162641|chr1:108851723-108851723|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7564086914062	2	539.754192	1077.49383	3.4497	0.001862	0.90475	0.00048834	4.3544	0.0023503	539.7546801258363	21.263	0.36446	21.263	21.158	21.522	0					22	7	5	0	0	0	0.575	1	6904	6904		38.754	4.6671	1	5909500	+		18336	12131	11550	11603	18614	18614					-0.04181537392287282
ISSLFPTRA	9	Unmodified	_ISSLFPTRA_					0	0	0		NLRP8|p.E440A|1|0.21|ENSG00000179709|chr19:55955377-55955377|A/C|missense_variant;NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	NLRP8|p.E440A|1|0.21|ENSG00000179709|chr19:55955377-55955377|A/C|missense_variant	NLRP8|p.E440A|1|0.21|ENSG00000179709|chr19:55955377-55955377|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2818298339844	2	496.282192	990.549831	0.73955	0.00036703	-1.1431	-0.00056732	-0.40359	-0.0002003	496.2819372666438	36.205	0.18243	36.205	36.141	36.324	0					9	5	2	0	0	0	0.36892	1	14095	14095		44.377	1.981	1	326680			18337	6779	11551	11604	18615	18615					0.05417760305840602
ISSLKDLITK	10	Unmodified	_ISSLKDLITK_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	373.23321533203125	3	373.232418	1116.67542	0.49908	0.00018627	0.71559	0.00026708	1.2147	0.00045335	373.2327022634818	21.473	0.21283	21.473	21.414	21.627	0					13	8	2	0	0	0	0.68774	1	5914	5914		22.562	0	1	135480			18338	11515	11552	11605	18616	18616					0.12175427371403202
ISSLNENAAKR	11	Unmodified	_ISSLNENAAKR_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.5542297363281	3	401.554443	1201.6415	-0.60167	-0.0002416	1.0686	0.0004291	0.46694	0.0001875	401.5547435735668	20.402	0.21749	20.402	20.294	20.511	0					12	4	4	0	0	0	0.68382	1	6464	6464		32.034	3.9526	1	528650			18339	4240	11553	11606	18617	18617					0.04874398932361146
ISSLVGGNSN	10	Unmodified	_ISSLVGGNSN_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2432556152344	2	474.243264	946.471974	0.60792	0.0002883	0.14635	6.9405E-05	0.75427	0.00035771	474.24316148115884	29.514	0.40024	29.514	29.367	29.767	0					14	8	3	0	0	0	0.28036	1	10951	10951		69.628	1.1429	1	551900	+		18340	13708	11554	11607	18618	18618					-0.0034029735018066276
ISSLVGGNSN	10	Unmodified	_ISSLVGGNSN_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2433776855469	2	474.243264	946.471974	2.366	0.0011221	-1.8423	-0.00087369	0.52371	0.00024837	474.2423012642563	29.433	0.30911	29.433	29.324	29.633	0					12	6	2	0	0	0	0.36647	1	10815	10815		59.931	5.1545	1	548910	+		18341	13708	11554	11607	18619	18619					-0.0034029735018066276
ISSMSLVIQ	9	Unmodified	_ISSMSLVIQ_					0	0	0		ENST00000266771.9_1_12:129278384-129278573:-|nuORF	ENST00000266771.9_1_12:129278384-129278573:-|nuORF	ENST00000266771.9_1_12:129278384-129278573:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2727966308594	2	489.270435	976.526318	0.78555	0.00038435	3.1241	0.0015285	3.9097	0.0019129	489.2714384002572	30.252	0.29149	30.252	30.167	30.458	0					23	7	4	0	0	0	0.14603	1	10898	10898		68.787	7.8149	1	1221700			18342	8357	11555	11608	18620	18620					0.03711578477009425
ISSNWGNPG	9	Unmodified	_ISSNWGNPG_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.21685791015625	2	466.217049	930.419545	-0.49866	-0.00023248	-0.25993	-0.00012118	-0.75859	-0.00035367	466.2169458814345	21	0.36147	21	20.943	21.304	0					13	7	3	0	0	0	0.37197	1	6828	6828		44.117	3.3386	1	409800			18343	5967	11556	11609	18621	18621					-0.04844835693143068
ISSSFIFKQ	9	Unmodified	_ISSSFIFKQ_					0	0	0		ENST00000457976.1_1_9:93881489-93881789:-|nuORF	ENST00000457976.1_1_9:93881489-93881789:-|nuORF	ENST00000457976.1_1_9:93881489-93881789:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7899780273438	2	528.78985	1055.56515	0.28577	0.00015111	0.21414	0.00011324	0.49991	0.00026435	528.7898564294318	31.788	0.30554	31.788	31.685	31.99	0					15	6	3	0	0	0	0.12239	1	12030	12030		74.255	5.7703	1	737440			18344	9705	11557	11610	18622	18622					0.03958627103043
ISSSGVIAPG	10	Unmodified	_ISSSGVIAPG_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.M1189*|1|0.34|ENSG00000084674|chr2:21015204-21015204|T/-|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.24505615234375	2	444.245275	886.475997	0.58924	0.00026177	-0.68693	-0.00030516	-0.097693	-4.34E-05	444.2447861839106	21.243	0.51358	21.243	20.931	21.444	0					37	12	5	0	0	0	0.52707	1	6685	6685		42.396	1.618	1	538340			18345	187;186	11558	11611	18623	18623					0.028217921435157223
ISSSQVRDGG	10	Unmodified	_ISSSQVRDGG_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM;DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2535400390625	2	503.25162	1004.48869	2.9288	0.0014739	1.1587	0.0005831	4.0875	0.002057	503.2522856495555	34.083	0.74422	34.083	33.973	34.717	0					28	15	4	0	0	0	0.43008	1	13036	13036		52.937	52.937	1	1639900			18346	847	11559	11612	18624	18624					-0.013377964642245388
ISSTKRPY	8	Unmodified	_ISSTKRPY_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5;SERPINB5|p.N223Ifs*59|1|0.37|ENSG00000206075|chr18:63499217-63499217|A/-|frameshift_variant	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2662658691406	2	476.266542	950.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.36	1	32.36	31.86	32.86	0								0	0	0	1.7419	1	12291	12291		60.972	7.6205	1				18347	7765	11560	11613	18625	18625					0.041291872717465594
ISSVALRGK	9	Unmodified	_ISSVALRGK_					0	0	0		UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant;UNC80|p.N2032*|1|0.42|ENSG00000144406|chr2:209936855-209936856|-/T|frameshift_variant;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant	UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7899475097656	2	465.790184	929.565815	0.47137	0.00021956	-1.2038	-0.00056071	-0.73242	-0.00034115	465.78972304258787	24.493	0.22183	24.493	24.405	24.627	0					13	5	4	0	0	0	0.13267	1	8263	8263		71.877	2.2498	1	918720			18348	4614	11561	11614	18626	18626					0.09821466542757662
ISSVVYLRE	9	Unmodified	_ISSVVYLRE_					0	0	0		DSTYK|p.D485V|1|0.12|ENSG00000133059|chr1:205163826-205163826|T/A|missense_variant	DSTYK|p.D485V|1|0.12|ENSG00000133059|chr1:205163826-205163826|T/A|missense_variant	DSTYK|p.D485V|1|0.12|ENSG00000133059|chr1:205163826-205163826|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.3012084960938	2	533.300581	1064.58661	2.3283	0.0012417	-1.2512	-0.00066725	1.0771	0.00057444	533.2999112607505	39.235	0.19009	39.235	39.131	39.321	0					9	6	2	0	0	0	0.42902	1	14936	14936		39.253	7.723	1	67804			18349	855	11562	11615	18627	18627					0.05690012131753974
ISTCRFAQRV	10	Carbamidomethyl (C)	_ISTC(Carbamidomethyl (C))RFAQRV_	ISTC(1)RFAQRV		ISTC(62)RFAQRV		0	1	0		nc|ENSG00000164627|Q6ZMV9-3|KIF6;ENSG00000164627|ENST00000287152|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2205505371094	3	413.220518	1236.63972	1.0255	0.00042376	-1.3147	-0.00054325	-0.28916	-0.00011949	413.21998892200077	19.174	0.32875	19.174	19.124	19.453	0					13	7	4	0	0	0	0.34979	1	5754	5754		61.765	15.856	1	690610			18350	5712	11563	11616	18628	18628	238				0.03087066642751779
ISTEDAIR	8	Unmodified	_ISTEDAIR_					0	0	0			REV__R3HCC1L|p.L487Wfs*8|1|0.1|ENSG00000166024|chr10:98209569-98209569|T/-|frameshift_variant	REV__R3HCC1L|p.L487Wfs*8|1|0.1|ENSG00000166024|chr10:98209569-98209569|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7402648925781	2	452.740357	903.46616	0.341	0.00015439	-0.73205	-0.00033143	-0.39105	-0.00017704	452.7399976316503	14.956	0.10769	14.956	14.899	15.007	0					6	5	2	0	0	0	0.7126	1	3273	3273		31.955	0	1	34450	+		18351	16084	11564	11617	18629	18629					0.010566041381366631
ISTEDLVLK	9	Unmodified	_ISTEDLVLK_					0	0	0		ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.8661804199219	3	339.865735	1016.57538	3.02	0.0010264	-0.73454	-0.00024965	2.2855	0.00077676	339.86558520807404	23.61	0.46324	23.61	23.451	23.914	0					21	9	4	0	0	0	0.50461	1	8019	8019		39.253	7.723	1	802860			18352	4462	11565	11618	18630	18630					0.06775190037615175
ISTEVEEAI	9	Unmodified	_ISTEVEEAI_					0	0	0			REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.75384521484375	2	495.75313	989.491707	0.73374	0.00036375	0.29257	0.00014504	1.0263	0.0005088	495.75329506963436	30.131	0.52985	30.131	30.05	30.579	0					32	13	4	0	0	0	0.22377	1	10825	10825		58.782	14.665	1	2172200	+		18353	12239	11566	11619	18631	18631					-0.0034596613008943677
ISTFRTTL	8	Unmodified	_ISTFRTTL_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7688293457031	2	469.768917	937.523281	-0.62361	-0.00029295	1.4407	0.00067682	0.81713	0.00038386	469.7700090044552	32.705	0.56551	32.705	32.492	33.057	0					27	14	4	0	0	0	0.30437	1	12024	12024		82.305	0	1	632000	+		18354	12755	11567	11620	18632	18632					0.052020714145328384
ISTISSVRNL	10	Unmodified	_ISTISSVRNL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.316650390625	2	545.316763	1088.61897	0.84048	0.00045833	-0.091034	-4.9643E-05	0.74945	0.00040869	545.3166485177405	51.533	0.63542	51.533	51.275	51.911	0					56	39	2	0	0	0	0.72769	1	15398	15398		17.468	17.468	1	130720			18355	1919	11568	11621	18633	18633					0.07820799534761136
ISTLASLTAL	10	Unmodified	_ISTLASLTAL_					0	0	0			REV__ENST00000595686.5_1_2:145693006-145939807:+|nuORF	REV__ENST00000595686.5_1_2:145693006-145939807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2975158691406	2	495.297507	988.580462	-1.2392	-0.00061376	1.087	0.00053839	-0.15218	-7.5376E-05	495.29798154268656	33.044	0.14371	33.044	32.957	33.101	0					11	6	2	0	0	0	0.54197	1	11055	11055		40.778	2.9666	1	81593	+		18356	20560	11569	11622	18634	18634					0.08571493900228688
ISTLQNTN	8	Unmodified	_ISTLQNTN_					0	0	0			REV__COPS3|p.L315*|1|0.22|ENSG00000141030|chr17:17254938-17254938|A/-|frameshift_variant	REV__COPS3|p.L315*|1|0.22|ENSG00000141030|chr17:17254938-17254938|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.7315368652344	2	445.732532	889.45051	-0.39787	-0.00017734	-1.2585	-0.00056095	-1.6564	-0.0007383	445.73186658494484	39.867	0.36583	39.867	39.738	40.104	0					22	13	2	0	0	0	0.66989	1	15183	15183		37.812	2.1932	1	117540	+		18357	12623	11570	11623	18635	18635					0.0013631762109298506
ISTLQQAIL	9	Unmodified	_ISTLQQAIL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7973327636719	2	493.797675	985.580796	0.64117	0.00031661	-1.218	-0.00060143	-0.57679	-0.00028482	493.7970002838123	39.081	0.24391	39.081	38.952	39.196	0					14	8	2	0	0	0	0.22837	1	15351	15351		58.23	0	1	409940			18358	3649	11571	11624	18636	18636					0.08742913620085346
ISTLQQAIL	9	Unmodified	_ISTLQQAIL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.79754638671875	2	493.797675	985.580796	0.88482	0.00043692	-1.087	-0.00053675	-0.20216	-9.9828E-05	493.79706424923256	39.004	0.29348	39.004	38.92	39.214	0					10	6	3	0	0	0	0.21263	1	15400	15400		60.118	5.3959	1	265010			18359	3649	11571	11624	18637	18637					0.08742913620085346
ISTLWRCP	8	Unmodified	_ISTLWRCP_					0	0	0			REV__ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant	REV__ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.25872802734375	2	488.257662	974.500772	2.5842	0.0012618	-0.27394	-0.00013375	2.3103	0.001128	488.2575290822468	30.603	0.40719	30.603	30.458	30.865	0					13	8	2	0	0	0	0.30437	1	11335	11335		82.305	82.305	1	4263700	+		18360	12162	11572	11625	18638	18638					0.012501487452368565
ISTNLKIP	8	Unmodified	_ISTNLKIP_					0	0	0		nc|ENSG00000237621|Q8NGU1|OR9A1P	nc|ENSG00000237621|Q8NGU1|OR9A1P	nc|ENSG00000237621|Q8NGU1|OR9A1P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2735290527344	2	443.273835	884.533118	-0.35399	-0.00015691	-0.058307	-2.5846E-05	-0.41229	-0.00018276	443.2737721630788	34.281	0.40061	34.281	34.132	34.533	0					22	10	3	0	0	0	0.37144	1	12750	12750		74.255	2.3776	1	1008500			18361	11782	11573	11626	18639	18639					0.08623259419891838
ISTNLKIP	8	Unmodified	_ISTNLKIP_					0	0	0		nc|ENSG00000237621|Q8NGU1|OR9A1P	nc|ENSG00000237621|Q8NGU1|OR9A1P	nc|ENSG00000237621|Q8NGU1|OR9A1P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.27337646484375	2	443.273835	884.533118	0.51866	0.00022991	-0.69425	-0.00030774	-0.1756	-7.7837E-05	443.27351628589673	34.266	0.63688	34.266	34.134	34.771	0					28	16	4	0	0	0	0.2498	1	13183	13183		101.6	19.296	1	1404800			18362	11782	11573	11626	18640	18640					0.08623259419891838
ISTNNYVL	8	Unmodified	_ISTNNYVL_					0	0	0			REV__ENST00000481352.6_1_6:43484832-43487644:+|nuORF	REV__ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2457275390625	2	462.245275	922.475997	0.11119	5.1399E-05	-0.44878	-0.00020744	-0.33758	-0.00015605	462.24502444768433	32.125	0.24117	32.125	32.021	32.262	0					17	10	2	0	0	0	0.61938	1	10340	10340		45.952	1.8352	1	176700	+		18363	16409	11574	11627	18641	18641					0.011657921435130447
ISTNNYVLV	9	Unmodified	_ISTNNYVLV_					0	0	0			REV__ENST00000481352.6_1_6:43484832-43487644:+|nuORF	REV__ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7793884277344	2	511.779482	1021.54441	0.037717	1.9303E-05	-0.48409	-0.00024775	-0.44638	-0.00022845	511.77962461529404	38.831	0.40489	38.831	38.594	38.998	0					12	8	2	0	0	0	0.2873	1	15340	15340		51.335	0.14276	1	108840	+		18364	16409	11575	11628	18642	18642					0.03450036723370431
ISTNSHPIL	9	Unmodified	_ISTNSHPIL_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2720642089844	2	491.271824	980.529095	0.58542	0.0002876	1.0577	0.00051962	1.6431	0.00080722	491.2716519881758	30	0.2482	30	29.9	30.148	0					7	5	2	0	0	0	0.032052	1	11184	11184		107.01	16.638	1	541570			18365	4226	11576	11629	18643	18643					0.03805169926192775
ISTNSHPIL	9	Unmodified	_ISTNSHPIL_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2716979980469	2	491.271824	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.952	1	29.952	29.452	30.452	0								0	0	0	0.0095889	1	11032	11032		110.12	27.815	1				18366	4226	11576	11629	18644	18644					0.03805169926192775
ISTQIRESP	9	Unmodified	_ISTQIRESP_					0	0	0		ENSG00000168754|ENST00000490605|FAM178B;nc|ENSG00000168754|Q8IXR5-2|FAM178B;nc|ENSG00000168754|Q8IXR5-4|FAM178B;ENST00000494172.1_1_2:97543530-97560824:-|nuORF	ENSG00000168754|ENST00000490605|FAM178B	ENSG00000168754|ENST00000490605|FAM178B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7808227539062	2	515.780013	1029.54547	-1.5375	-0.00079303	1.7723	0.0009141	0.23473	0.00012107	515.7814073949584	32.235	0.11687	32.235	32.16	32.277	0					5	3	2	0	0	0	0.22837	1	11180	11180		58.23	0.41864	1	82153			18367	6116	11577	11630	18645	18645					0.03188251092274186
ISTQNVVGLN	10	Unmodified	_ISTQNVVGLN_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.78857421875	2	522.787838	1043.56112	1.5243	0.00079689	-0.52719	-0.00027561	0.99712	0.00052128	522.7875795714781	24.37	0.098082	24.37	24.309	24.407	0					5	3	2	0	0	0	0.44601	1	7190	7190		51.193	3.5354	1	102890			18368	3082	11578	11631	18646	18646					0.04108537609340601
ISTSGDMLFVL	11	Unmodified	_ISTSGDMLFVL_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	394.874755859375	3	394.874014	1181.60021	3.4793	0.0013739	-1.6798	-0.0006633	1.7995	0.00071058	394.87312419352924	23.579	0.20011	23.579	23.522	23.722	0					11	7	2	0	0	0	0.60833	1	7110	7110		36.318	3.5671	1	84966	+		18369	17542	11579	11632	18647	18647					0.016675018486921545
ISTSLGPKS	9	Unmodified	_ISTSLGPKS_					0	0	0			REV__ENSG00000170948|ENST00000595891|MBD3L1	REV__ENSG00000170948|ENST00000595891|MBD3L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.25286865234375	2	445.2531	888.491647	-0.46443	-0.00020679	-0.039007	-1.7368E-05	-0.50344	-0.00022416	445.2530178056785	22.505	0.54885	22.505	22.202	22.75	0					18	12	3	0	0	0	0.33044	1	6712	6712		47.657	1.6851	1	234340	+		18370	16390	11580	11633	18648	18648					0.04294078660575451
ISTSRPTSF	9	Unmodified	_ISTSRPTSF_					0	0	0			REV__ENST00000456894.5_1_22:39150683-39150851:-|nuORF	REV__ENST00000456894.5_1_22:39150683-39150851:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2611389160156	2	498.261456	994.50836	0.17573	8.756E-05	-0.93971	-0.00046822	-0.76398	-0.00038066	498.2610006829944	32.719	0.11572	32.719	32.659	32.774	0					6	3	2	0	0	0	0.16806	1	11407	11407		65.465	5.3471	1	51814	+		18371	19351	11581	11634	18649	18649					0.010885795465242154
ISTSRPTSF	9	Unmodified	_ISTSRPTSF_					0	0	0			REV__ENST00000456894.5_1_22:39150683-39150851:-|nuORF	REV__ENST00000456894.5_1_22:39150683-39150851:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2614440917969	2	498.261456	994.50836	1.0288	0.00051261	-0.69497	-0.00034628	0.33383	0.00016633	498.2611174197397	32.918	0.16629	32.918	32.806	32.972	0					7	3	3	0	0	0	0.16806	1	12468	12468		65.465	0	1	621820	+		18372	19351	11581	11634	18650	18650					0.010885795465242154
ISTSVTSTPP	10	Unmodified	_ISTSVTSTPP_					0	0	0		ENST00000524624.5_1_8:144674891-144675038:-|nuORF	ENST00000524624.5_1_8:144674891-144675038:-|nuORF	ENST00000524624.5_1_8:144674891-144675038:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.26263427734375	2	495.261122	988.507691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.343	1	33.343	32.843	33.843	0								0	0	0	0.32041	1	11692	11692		47.657	1.7054	1				18373	10345	11582	11635	18651	18651					0.012977401068042127
ISTSYLKAGF	10	Unmodified	_ISTSYLKAGF_					0	0	0			REV__nc|ENSG00000164885|Q00535-2|CDK5	REV__nc|ENSG00000164885|Q00535-2|CDK5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7957153320312	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.121	1	45.121	44.621	45.621	0								0	0	0	0.40063	1	18076	18076		30.318	3.6248	1		+		18374	16009	11583	11636	18652	18652					0.03634609757477847
ISVAFRRGSRL	11	Unmodified	_ISVAFRRGSRL_					0	0	0			REV__nc|ENSG00000205629|Q9UIC8-2|LCMT1	REV__nc|ENSG00000205629|Q9UIC8-2|LCMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.25439453125	3	421.254439	1260.74149	-0.32537	-0.00013706	0.31075	0.00013091	-0.014616	-6.157E-06	421.25464250323927	19.305	0.56071	19.305	19.096	19.656	0					24	11	4	0	0	0	0.78029	1	5954	5954		19.263	2.5453	1	342830	+		18375	21196	11584	11637	18653	18653					0.12154681056836125
ISVAITEKSGF	11	Unmodified	_ISVAITEKSGF_					0	0	0		ENST00000450180.5_1_7:37723423-37724800:+|nuORF;ENST00000461610.5_1_7:37723426-37725096:+|nuORF	ENST00000450180.5_1_7:37723423-37724800:+|nuORF	ENST00000450180.5_1_7:37723423-37724800:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.31982421875	2	576.318971	1150.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.657	1	34.657	34.157	35.157	0								0	0	0	0.2814	1	12287	12287		54.722	1.6334	1				18376	9645	11585	11638	18654	18654					0.05410263957674033
ISVASDSTF	9	Unmodified	_ISVASDSTF_					0	0	0			REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7264099121094	2	463.726915	925.439277	0.056653	2.6271E-05	-0.29946	-0.00013887	-0.24281	-0.0001126	463.7267853154779	30.295	0.17757	30.295	30.217	30.394	0					5	4	2	0	0	0	0.18605	1	10922	10922		63.306	7.8021	1	57684	+		18377	12399	11586	11639	18655	18655					-0.02642504473055851
ISVCEKLKM	9	Carbamidomethyl (C)	_ISVC(Carbamidomethyl (C))EKLKM_	ISVC(1)EKLKM		ISVC(51)EKLKM		0	1	0			REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.8681945800781	3	369.868205	1106.58279	3.1922	0.0011807	-3.6869	-0.0013637	-0.49476	-0.000183	369.8670713186615	19.22	0.36427	19.22	19.112	19.476	0					13	7	3	0	0	0	0.28897	1	5912	5912		51.193	6.8155	1	1279000	+		18378	13637	11587	11640	18656	18656	520				0.033758830420310915
ISVGEAKKK	9	Unmodified	_ISVGEAKKK_					0	0	0		tr|U7SQZ5|U7SQZ5_FUSNUTwo-componentsystem,NtrCfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01729PE=4SV=1	tr|U7SQZ5|U7SQZ5_FUSNUTwo-componentsystem,NtrCfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01729PE=4SV=1	tr|U7SQZ5|U7SQZ5_FUSNUTwo-componentsystem,NtrCfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01729PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.29736328125	2	480.297842	958.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.849	1	19.849	19.349	20.349	0								0	0	0	0.28996	1	5472	5472		37.159	5.2042	1				18379	22717	11588	11641	18657	18657					0.10018333339951369
ISVGIYSLVQ	10	Unmodified	_ISVGIYSLVQ_					0	0	0		ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENST00000435236.2_1_X:98974480-98975440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8101196289062	2	539.810782	1077.60701	1.9551	0.0010554	-0.37085	-0.00020019	1.5842	0.00085518	539.8106076214242	38.63	0.41282	38.63	38.388	38.801	0					28	14	3	0	0	0	0.39177	1	15106	15106		61.691	13.732	1	647780			18380	9522	11589	11642	18658	18658					0.0713118279156788
ISVIFNVALG	10	Unmodified	_ISVIFNVALG_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	344.8732604980469	3	344.874454	1031.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.873	1	24.873	24.373	25.373	0								0	0	0	0.40063	1	7823	7823		30.318	2.2362	1				18381	1051	11590	11643	18659	18659					0.08699503999741864
ISVKHPQADT	10	Unmodified	_ISVKHPQADT_					0	0	0			REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2954711914062	2	548.293288	1094.57202	1.1557	0.00063366	2.9351	0.0016093	4.0908	0.002243	548.2948696900463	40.242	0.14672	40.242	40.154	40.301	0					11	7	2	0	0	0	0.55603	1	14301	14301		39.253	3.6345	1	74822	+		18382	20268	11591	11644	18660	18660					0.028519399836113735
ISVLKANVM	9	Oxidation (M)	_ISVLKANVM(Oxidation (M))_		ISVLKANVM(1)		ISVLKANVM(44)	0	0	1			REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.78509521484375	2	495.786253	989.557952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.099	1	51.099	50.599	51.599	0								0	0	0	0.24544	1	20045	20045		44.377	7.9304	1		+		18383	21710	11592	11645	18661	18661		788			0.0627557123096949
ISVMCTLIK	9	Carbamidomethyl (C)	_ISVMC(Carbamidomethyl (C))TLIK_	ISVMC(1)TLIK		ISVMC(57)TLIK		0	1	0		ENST00000525506.1_1_1:33116898-33123241:+|nuORF	ENST00000525506.1_1_1:33116898-33123241:+|nuORF	ENST00000525506.1_1_1:33116898-33123241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7974853515625	2	532.795763	1063.57697	1.0689	0.00056952	1.049	0.00055888	2.1179	0.0011284	532.7965520041047	41.33	0.30093	41.33	41.225	41.526	0					23	13	3	0	0	0	0.24095	1	16225	16225		56.721	12.604	1	151310			18384	10362	11593	11646	18662	18662	418				0.047727845303825234
ISVPADELKR	10	Unmodified	_ISVPADELKR_					0	0	0			REV__ENSG00000225526|ENST00000564146|MKRN2OS	REV__ENSG00000225526|ENST00000564146|MKRN2OS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5536804199219	3	376.552151	1126.63462	3.254	0.0012253	0.13535	5.0966E-05	3.3894	0.0012763	376.5524602854924	17.508	1.3493	17.508	17.353	18.702	0					85	27	6	0	0	0	0.56931	1	5072	5072		42.338	5.8913	1	7079900	+		18385	17626	11594	11647	18663	18663					0.0763708605179545
ISVQSAMTKK	10	Unmodified	_ISVQSAMTKK_					0	0	0			REV__ENST00000425159.7_1_17:45534149-45567581:-|nuORF	REV__ENST00000425159.7_1_17:45534149-45567581:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.8741760253906	3	364.874236	1091.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.73	1	14.73	14.23	15.23	0								0	0	0	0.4201	1	3884	3884		19.263	5.7547	1		+		18386	17843	11595	11648	18664	18664					0.05874341288404139
ISVVSATK	8	Unmodified	_ISVVSATK_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.7447814941406	2	402.744911	803.475269	0.047543	1.9148E-05	-0.27119	-0.00010922	-0.22365	-9.0072E-05	402.74479244873555	23.971	0.16429	23.971	23.915	24.079	0					7	3	3	0	0	0	0.46905	1	8344	8344		63.306	4.5243	1	188320			18387	2066	11596	11649	18665	18665					0.0656699749447398
ISWARTKK	8	Unmodified	_ISWARTKK_					0	0	0		CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant;ENSG00000047230|ENST00000359276|CTPS2	CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant	CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.29974365234375	2	495.298176	988.581799	2.8328	0.0014031	0.17392	8.6143E-05	3.0067	0.0014892	495.2982971468373	15.722	0.26701	15.722	15.613	15.88	0					8	5	2	0	0	0	0.63077	1	4220	4220		44.117	1.6423	1	848500			18388	712	11597	11650	18666	18666					0.08705172779662007
ISWFPLPP	8	Unmodified	_ISWFPLPP_					0	0	0		ENST00000519860.3_2_5:172324967-172325219:+|nuORF	ENST00000519860.3_2_5:172324967-172325219:+|nuORF	ENST00000519860.3_2_5:172324967-172325219:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.767578125	2	478.765646	955.516739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.818	1	35.818	35.318	36.318	0								0	0	0	1.7419	1	13909	13909		29.842	0.69198	1				18389	10290	11598	11651	18667	18667					0.03720178253786344
ISWVPYHGA	9	Unmodified	_ISWVPYHGA_					0	0	0			REV__ENSG00000102575|ENST00000648477|ACP5	REV__ENSG00000102575|ENST00000648477|ACP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.264404296875	2	515.261259	1028.50797	1.4071	0.00072503	3.6915	0.0019021	5.0986	0.0026271	515.2636486990029	19.222	0.21444	19.222	19.066	19.281	0					11	4	3	0	0	0	0.083791	1	6050	6050		83.287	8.2439	1	1736100	+		18390	13641	11599	11652	18668	18668					-0.005147953826735829
ISYEILGNL	9	Unmodified	_ISYEILGNL_					0	0	0			REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2808837890625	2	511.281857	1020.54916	-0.36948	-0.00018891	1.0989	0.00056186	0.72944	0.00037295	511.2808365081059	20.081	0.22246	20.081	19.906	20.128	0					11	7	3	0	0	0	0.53083	1	5562	5562		29.15	1.2673	1	79818	+		18391	12676	11600	11653	18669	18669					0.03970920866152028
ISYFLDTVGVQ	11	Unmodified	_ISYFLDTVGVQ_					0	0	0		THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|65|2|anti-sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|65|2|anti-sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|65|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2152404785156	3	414.551928	1240.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.886	1	23.886	23.386	24.386	0								0	0	0	0.41351	1	6971	6971		34.087	3.5176	1				18392	22529	11601	11654	18670	18670					0.02326246612074101
ISYGATSIR	9	Unmodified	_ISYGATSIR_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.26361083984375	2	484.263999	966.513445	0.86186	0.00041737	-1.5939	-0.00077188	-0.73207	-0.00035451	484.2629319695875	34.335	0.2141	34.335	34.229	34.443	0					12	4	4	0	0	0	0.4966	1	13164	13164		32.812	1.2826	1	348110	+		18393	14835	11602	11655	18671	18671					0.02884883409149097
ISYLHPGTVD	10	Unmodified	_ISYLHPGTVD_					0	0	0			REV__ENSG00000136930|ENST00000259457|PSMB7	REV__ENSG00000136930|ENST00000259457|PSMB7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.2854614257812	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.86	1	27.86	27.36	28.36	0								0	0	0	0.4162	1	8639	8639		25.574	4.6271	1		+		18394	14892	11603	11656	18672	18672					0.003971352350845336
ISYLTGVLA	9	Unmodified	_ISYLTGVLA_					0	0	0			REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7732238769531	2	468.773668	935.532783	0.27216	0.00012758	-0.56345	-0.00026413	-0.29129	-0.00013655	468.77334856280925	36.462	0.22787	36.462	36.419	36.647	0					9	6	2	0	0	0	0.2873	1	13767	13767		51.335	12.083	1	99242	+		18395	21759	11604	11657	18673	18673					0.062438397000505574
ITADHLIEK	9	Unmodified	_ITADHLIEK_					0	0	0		ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2932739257812	2	520.292756	1038.57096	0.64928	0.00033782	-0.098466	-5.1231E-05	0.55081	0.00028658	520.292876749111	25.566	0.071424	25.566	25.514	25.586	0					4	2	2	0	0	0	0.3269	1	7705	7705		47.96	10.148	1	27364			18396	2708	11605	11658	18674	18674					0.053217256147036096
ITAKETAYQ	9	Unmodified	_ITAKETAYQ_					0	0	0		GRHL1|p.R75Efs*26|1|0.3|ENSG00000134317|chr2:9958791-9958792|-/AG|frameshift_variant	GRHL1|p.R75Efs*26|1|0.3|ENSG00000134317|chr2:9958791-9958792|-/AG|frameshift_variant	GRHL1|p.R75Efs*26|1|0.3|ENSG00000134317|chr2:9958791-9958792|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2759399414062	2	512.769114	1023.52368	1.4322	0.0007344	-0.98556	-0.00050537	0.44666	0.00022903	512.7684503572902	18.215	0.70816	18.215	18.06	18.768	0					27	14	2	0	0	0	0.33044	1	5615	5615		47.657	5.2612	1	87156000			18397	11167	11606	11659	18675	18675					0.012854463436951846
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2922668457031	2	477.292559	952.570566	0.0086937	4.1494E-06	0.21628	0.00010323	0.22497	0.00010738	477.2927596685822	30.504	0.83269	30.504	30.193	31.025	0					55	32	2	0	0	0	0.25716	1	9856	9856		54.776	12.38	1	248070			18398	2965	11607	11660	18676	18676					0.09238350685518526
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2924499511719	2	477.292559	952.570566	-0.10934	-5.2189E-05	-0.34081	-0.00016266	-0.45015	-0.00021485	477.29238353550033	30.426	0.1685	30.426	30.37	30.539	0					10	6	2	0	0	0	0.47038	1	9696	9696		35.618	6.4687	1	82034			18399	2965	11607	11660	18677	18677					0.09238350685518526
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2926025390625	2	477.292559	952.570566	0.3951	0.00018858	-0.19756	-9.4292E-05	0.19754	9.4285E-05	477.29247570432955	30.746	1.7055	30.746	30.445	32.151	0					101	41	4	0	0	0	0.14603	1	11093	11093		68.787	10.005	1	1277800			18400	2965	11607	11660	18678	18678					0.09238350685518526
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2928771972656	2	477.292559	952.570566	-0.34197	-0.00016322	-0.19723	-9.4135E-05	-0.53919	-0.00025735	477.2923902951291	30.519	1.0292	30.519	30.29	31.319	0					53	27	3	0	0	0	0.22377	1	10355	10355		58.782	7.4465	1	311810			18401	2965	11607	11660	18679	18679					0.09238350685518526
ITALAPSTMK	10	Unmodified	_ITALAPSTMK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7915649414062	2	516.791535	1031.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.509	1	29.509	29.009	30.009	0								0	0	0	0.097225	1	10934	10934		80.455	14.989	1				18402	1545;6995;2493	11608	11661	18680	18680					0.05399553885399655
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.29241943359375	2	477.292559	952.570566	-0.34197	-0.00016322	-0.19723	-9.4135E-05	-0.53919	-0.00025735	477.2923902951291	30.519	1.0292	30.519	30.29	31.319	0					53	27	3	0	0	0	0.33044	1	10591	10591		47.657	1.6851	1	311810			18403	1927	11609	11662	18681	18681					0.09238350685518526
ITARTTALQ	9	Unmodified	_ITARTTALQ_					0	0	0		NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant;ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant	NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7855224609375	2	487.785099	973.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.99	1	13.99	13.49	14.49	0								0	0	0	0.24724	1	2818	2818		44.117	3.3386	1				18404	1862	11610	11663	18682	18682					0.06780858817501212
ITARVNVD	8	Unmodified	_ITARVNVD_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2508850097656	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.702	1	25.702	25.202	26.202	0								0	0	0	1.7419	1	7762	7762		58.782	2.0609	1				18405	4616	11611	11664	18683	18683					0.03944614237661881
ITAVTVNQSL	10	Unmodified	_ITAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2976684570312	2	523.298039	1044.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.984	1	38.984	38.484	39.484	0								0	0	0	0.37702	1	12686	12686		37.508	3.5865	1			+	18406	11643	11612	11665	18684	18684					0.061017082691250835
ITAVTVNQSL	10	Unmodified	_ITAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2986450195312	2	523.298039	1044.58152	0.47913	0.00025073	1.0092	0.0005281	1.4883	0.00077883	523.2986152447678	39.067	0.187	39.067	39.01	39.197	0					17	10	2	0	0	0	0.1725	1	13142	13142		82.831	7.7872	1	223250		+	18407	11643	11612	11665	18685	18685					0.061017082691250835
ITAVTVNQSL	10	Unmodified	_ITAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.298095703125	2	523.298039	1044.58152	1.7925	0.00093802	-1.2386	-0.00064816	0.55392	0.00028986	523.2973293248095	39.281	0.29855	39.281	39.107	39.406	0					22	10	3	0	0	0	0.0049346	1	15437	15437		166.07	64.819	1	997980		+	18408	11643	11612	11665	18686	18686					0.061017082691250835
ITAVTVNQSL	10	Unmodified	_ITAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2984008789062	2	523.298039	1044.58152	-1.2876	-0.00067378	2.8381	0.0014852	1.5506	0.0008114	523.2995809156719	39.07	0.16721	39.07	38.996	39.163	0					14	8	2	0	0	0	0.5276	1	13938	13938		42.338	2.2799	1	278230		+	18409	11643	11612	11665	18687	18687					0.061017082691250835
ITAVTVNQSL	10	Unmodified	_ITAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2981567382812	2	523.298039	1044.58152	1.6252	0.00085049	-1.2485	-0.00065334	0.37675	0.00019715	523.2973498090491	39.248	0.374	39.248	39.064	39.438	0					14	8	2	0	0	0	0.010125	1	15484	15484		142.36	62.648	1	724370		+	18410	11643	11612	11665	18688	18688					0.061017082691250835
ITAVTVNQSL	10	Unmodified	_ITAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2979736328125	2	523.298039	1044.58152	3.4145	0.0017868	-4.0759	-0.0021329	-0.66139	-0.00034611	523.2955741915159	39.239	0.47591	39.239	38.856	39.332	0					20	10	3	0	0	0	0.0077833	1	15477	15477		154.01	22.98	1	1755900		+	18411	11643	11612	11665	18689	18689					0.061017082691250835
ITCTPHYAKK	10	Unmodified	_ITCTPHYAKK_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.3093872070312	2	581.307884	1160.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.934	1	25.934	25.434	26.434	0								0	0	0	0.28704	1	8884	8884		52.937	1.744	1				18412	7032	11613	11666	18690	18690					0.027337610082440733
ITDEFVKQK	9	Unmodified	_ITDEFVKQK_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.3060302734375	2	554.305864	1106.59717	1.3126	0.00072756	-0.78677	-0.00043611	0.52578	0.00029144	554.3051185235619	23.707	0.13535	23.707	23.615	23.751	0					6	4	2	0	0	0	0.021961	1	6898	6898		118.74	36.503	1	65833			18413	2166	11614	11667	18691	18691					0.04813994786195508
ITDEFVKQK	9	Unmodified	_ITDEFVKQK_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.3062744140625	2	554.305864	1106.59717	0.60564	0.00033571	0.14095	7.8127E-05	0.74658	0.00041384	554.3057942046287	23.998	0.14809	23.998	23.904	24.052	0					8	3	3	0	0	0	0.020674	1	8035	8035		120.87	43.551	1	788490			18414	2166	11614	11667	18692	18692					0.04813994786195508
ITDEFVKQK	9	Unmodified	_ITDEFVKQK_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.3068237304688	2	554.305864	1106.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.743	1	23.743	23.243	24.243	0								0	0	0	0.072369	1	7175	7175		79.713	32.055	1				18415	2166	11614	11667	18693	18693					0.04813994786195508
ITDEFVKQK	9	Unmodified	_ITDEFVKQK_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.306396484375	2	554.305864	1106.59717	-0.017635	-9.7753E-06	0.86134	0.00047745	0.84371	0.00046767	554.3064069326762	23.939	0.21556	23.939	23.83	24.045	0					9	4	3	0	0	0	0.0025054	1	8324	8324		171.53	69.931	1	387950			18416	2166	11614	11667	18694	18694					0.04813994786195508
ITDELVIIN	9	Unmodified	_ITDELVIIN_					0	0	0			REV__ENST00000489926.6_1_2:99725972-99757602:-|nuORF	REV__ENST00000489926.6_1_2:99725972-99757602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2962646484375	2	515.294965	1028.57538	0.78805	0.00040608	0.93061	0.00047954	1.7187	0.00088562	515.2954373188144	25.992	0.60879	25.992	25.885	26.493	0					33	12	4	0	0	0	0.25109	1	9235	9235		55.504	2.1528	1	3990000	+		18417	19559	11615	11668	18695	18695					0.06223190037621862
ITDFVELLG	9	Unmodified	_ITDFVELLG_					0	0	0		ENST00000450062.1_1_7:55832495-55840978:+|nuORF;ENST00000459834.5_1_7:56079457-56101834:-|nuORF;ENSG00000146733|ENST00000275605|PSPH	ENST00000450062.1_1_7:55832495-55840978:+|nuORF	ENST00000450062.1_1_7:55832495-55840978:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7940368652344	2	503.776408	1005.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.09	1	37.09	36.59	37.59	0								0	0	0	0.23459	1	13285	13285		45.952	6.6991	1				18418	4743	11616	11669	18696	18696					0.035715184918672094
ITDGEKLRGN	10	Unmodified	_ITDGEKLRGN_					0	0	0			REV__EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant	REV__EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7966918945312	2	551.796195	1101.57784	1.3065	0.00072091	-0.54719	-0.00030194	0.7593	0.00041898	551.7956901419262	27.059	0.12395	27.059	27.001	27.125	0					7	4	2	0	0	0	0.56931	1	8295	8295		37.812	2.1932	1	69887	+		18419	12788	11617	11670	18697	18697					0.03111038495308094
ITDHRIKLT	9	Unmodified	_ITDHRIKLT_					0	0	0		tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1	tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1	tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.220703125	3	366.220624	1095.64004	-2.0716	-0.00075866	1.9308	0.00070709	-0.14083	-5.1576E-05	366.2212603507036	16.507	0.41196	16.507	16.394	16.806	0					18	12	3	0	0	0	0.53064	1	3941	3941		29.17	0	1	140770			18420	22697	11618	11671	18698	18698					0.09604809634265621
ITDSKVKLK	9	Unmodified	_ITDSKVKLK_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.3262939453125	2	516.326599	1030.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.43	1	17.43	16.93	17.93	0								0	0	0	0.16453	1	4155	4155		56.434	19.987	1				18421	5878	11619	11672	18699	18699					0.12455175545505881
ITEADKAFK	9	Unmodified	_ITEADKAFK_					0	0	0		ENST00000373344.9_1_X:77041479-77041623:-|nuORF	ENST00000373344.9_1_X:77041479-77041623:-|nuORF	ENST00000373344.9_1_X:77041479-77041623:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.77984619140625	2	511.779482	1021.54441	-0.35572	-0.00018205	0.4126	0.00021116	0.056883	2.9112E-05	511.78011813330477	34.637	0.10904	34.637	34.593	34.702	0					9	5	2	0	0	0	0.42902	1	11690	11690		39.253	2.0937	1	37524			18422	8993	11620	11673	18700	18700					0.03450036723370431
ITEAMIKY	8	Oxidation (M)	_ITEAM(Oxidation (M))IKY_		ITEAM(1)IKY		ITEAM(41)IKY	0	0	1		tr|U7T406|U7T406_FUSNUCellshape-determiningproteinMreBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mreBPE=3SV=1	tr|U7T406|U7T406_FUSNUCellshape-determiningproteinMreBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mreBPE=3SV=1	tr|U7T406|U7T406_FUSNUCellshape-determiningproteinMreBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mreBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7593688964844	2	492.757161	983.499769	3.4558	0.0017028	0.14747	7.2667E-05	3.6032	0.0017755	492.7572816377836	15.701	0.1063	15.701	15.634	15.74	0					10	4	3	0	0	0	0.65276	1	3622	3622		40.573	40.573	1	242560			18423	22980	11621	11674	18701	18701		828			0.007358895856896197
ITECLMYIV	9	Unmodified	_ITECLMYIV_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.7752075195312	2	542.774496	1083.53444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.56	1	29.56	29.06	30.06	0								0	0	0	0.3119	1	9635	9635		18.324	0	1		+		18424	17549	11622	11675	18702	18702					-0.003986105978810883
ITEEETLLK	9	Unmodified	_ITEEETLLK_					0	0	0			REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2013244628906	3	359.200895	1074.58086	1.2707	0.00045642	-0.21564	-7.746E-05	1.055	0.00037897	359.2008429597998	33.603	0.21629	33.603	33.483	33.7	0					18	4	5	0	0	0	0.35045	1	12794	12794		44.377	0	1	1084400	+		18425	17451	11623	11676	18703	18703					0.046548688294251406
ITEEKVSL	8	Unmodified	_ITEEKVSL_					0	0	0			REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7596130371094	2	459.760758	917.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.629	1	30.629	30.129	31.129	0								0	0	0	1.7419	1	9779	9779		51.335	0	1		+		18426	16488	11624	11677	18704	18704					0.04490945457757789
ITEENALKL	9	Unmodified	_ITEENALKL_					0	0	0			REV__nc|ENSG00000149488|Q8TDI7-3|TMC2	REV__nc|ENSG00000149488|Q8TDI7-3|TMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7931518554688	2	515.792589	1029.57063	1.513	0.00078041	-0.61669	-0.00031809	0.89633	0.00046232	516.293383376215	39.316	0.23997	39.316	39.243	39.483	0					9	5	2	0	0	0	0.3269	1	15555	15555		47.96	1.1931	1	119470	+		18427	15424	11625	11678	18705	18705					0.05702305894828896
ITEGGVSIN	9	Unmodified	_ITEGGVSIN_					0	0	0		ENSG00000139131|ENST00000324868|YARS2;YARS2|p.R427L|1|0.1|ENSG00000139131|chr12:32747358-32747358|C/A|missense_variant	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.234619140625	2	445.234907	888.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.739	1	36.739	36.239	37.239	0								0	0	0	0.22284	1	14330	14330		47.657	4.7931	1				18428	4305	11626	11679	18706	18706					0.006572017638632133
ITEKFSGER	9	Unmodified	_ITEKFSGER_					0	0	0			REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7807006835938	2	533.780013	1065.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.153	1	24.153	23.653	24.653	0								0	0	0	0.27025	1	8417	8417		40.778	6.6056	1		+		18429	13099	11627	11680	18707	18707					0.015322510922715082
ITEKREQLG	9	Unmodified	_ITEKREQLG_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3021850585938	2	537.301113	1072.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.783	1	29.783	29.283	30.283	0								0	0	0	0.33579	1	10064	10064		28.081	1.0342	1		+		18430	13133	11628	11681	18708	18708					0.05428226500657729
ITEPHSQAL	9	Unmodified	_ITEPHSQAL_					0	0	0		FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant;FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant;FANCA|p.G972Afs*17|1|0.37|ENSG00000187741|chr16:89758643-89758643|C/-|frameshift_variant;nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2611389160156	2	498.261456	994.50836	-0.054312	-2.7061E-05	-0.58638	-0.00029217	-0.6407	-0.00031923	498.26118522413464	33.211	0.21274	33.211	33.125	33.338	0					20	9	3	0	0	0	0.44593	1	10770	10770		37.812	2.1932	1	122400			18431	7214	11629	11682	18709	18709					0.010885795465128467
ITEPKAVFA	9	Unmodified	_ITEPKAVFA_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7776794433594	2	488.279118	974.543683	-0.52103	-0.00025441	-1.3185	-0.00064379	-1.8395	-0.0008982	488.2808189632751	36.366	0.56587	36.366	36.132	36.698	0					35	11	4	0	0	0	0.30268	1	14147	14147		50.025	2.1089	1	931380			18432	11590	11630	11683	18710	18710					0.05539242074326012
ITEREAEP	8	Unmodified	_ITEREAEP_					0	0	0		ENSG00000057663|ENST00000369076|ATG5;ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant;ATG5|p.N236Efs*9|1|0.28|ENSG00000057663|chr6:106186663-106186664|-/T|frameshift_variant	ENSG00000057663|ENST00000369076|ATG5	ENSG00000057663|ENST00000369076|ATG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.73773193359375	2	472.737814	943.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.59	1	23.59	23.09	24.09	0								0	0	0	1.7419	1	8020	8020		73.975	10.668	1				18433	1297	11631	11684	18711	18711					-0.01291699724481532
ITETKRKNT	9	Unmodified	_ITETKRKNT_					0	0	0		ENST00000521853.2_1_11:111942369-111943787:-|nuORF	ENST00000521853.2_1_11:111942369-111943787:-|nuORF	ENST00000521853.2_1_11:111942369-111943787:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.21331787109375	3	364.212017	1089.61422	3.14	0.0011436	-0.071485	-2.6036E-05	3.0685	0.0011176	364.2118540321723	26.082	0.46818	26.082	25.966	26.434	0					19	9	4	0	0	0	0.36892	1	9201	9201		44.377	3.599	1	877990			18434	10322	11632	11685	18712	18712					0.07299915391990908
ITEVQLLVD	9	Unmodified	_ITEVQLLVD_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2962036132812	2	515.294965	1028.57538	1.0861	0.00055966	0.79301	0.00040864	1.8791	0.0009683	515.295410961076	25.924	0.27996	25.924	25.75	26.03	0					7	4	2	0	0	0	0.53083	1	8285	8285		29.15	1.0681	1	108990	+		18435	12745	11633	11686	18713	18713					0.06223190037621862
ITFFSSSSAK	10	Unmodified	_ITFFSSSSAK_					0	0	0		ENST00000609350.1_1_2:128644229-128644535:+|nuORF;ENST00000439559.2_1_10:89102840-89103146:+|nuORF;ENST00000605920.1_1_10:81586793-81587114:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7786865234375	2	537.776939	1073.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.362	1	35.362	34.862	35.862	0								0	0	0	0.28607	1	11593	11593		53.089	3.6474	1				18436	9564	11634	11687	18714	18714					0.005497328607589225
ITFFSSSSAK	10	Unmodified	_ITFFSSSSAK_					0	0	0		ENST00000609350.1_1_2:128644229-128644535:+|nuORF;ENST00000439559.2_1_10:89102840-89103146:+|nuORF;ENST00000605920.1_1_10:81586793-81587114:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7783813476562	2	537.776939	1073.53933	1.8869	0.0010147	0.32029	0.00017224	2.2071	0.001187	537.7765970122847	35.643	0.33657	35.643	35.459	35.796	0					13	9	2	0	0	0	0.44292	1	13820	13820		51.528	5.5555	1	359020			18437	9564	11634	11687	18715	18715					0.005497328607589225
ITFFSSSSAK	10	Unmodified	_ITFFSSSSAK_					0	0	0		ENST00000609350.1_1_2:128644229-128644535:+|nuORF;ENST00000439559.2_1_10:89102840-89103146:+|nuORF;ENST00000605920.1_1_10:81586793-81587114:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.77734375	2	537.776939	1073.53933	2.0005	0.0010758	-0.2741	-0.00014741	1.7264	0.00092842	537.776438157169	35.583	0.37261	35.583	35.364	35.737	0					15	7	4	0	0	0	0.38179	1	13759	13759		58.246	6.9108	1	666300			18438	9564	11634	11687	18716	18716					0.005497328607589225
ITGLLQEFD	9	Unmodified	_ITGLLQEFD_					0	0	0		ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	ENSG00000104419|ENST00000323851|NDRG1	ENSG00000104419|ENST00000323851|NDRG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2699584960938	2	518.27149	1034.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.537	1	31.537	31.037	32.037	0								0	0	0	0.22284	1	10458	10458		47.657	5.2612	1				18439	2286	11635	11688	18717	18717					0.012543304864948368
ITGLLQGQ	8	Unmodified	_ITGLLQGQ_					0	0	0			REV__ENSG00000095015|ENST00000399503|MAP3K1;REV__ENST00000469188.1_1_5:56183212-56183548:+|nuORF	REV__ENSG00000095015|ENST00000399503|MAP3K1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.2428283691406	2	415.242535	828.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.167	1	21.167	20.667	21.667	0								0	0	0	1.7419	1	5788	5788		37.159	0	1		+		18440	13465;19452	11636	11689	18718	18718					0.049421133517171256
ITGLSLAKP	9	Unmodified	_ITGLSLAKP_					0	0	0			REV__MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant	REV__MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2813415527344	2	450.28166	898.548768	0.63289	0.00028498	-1.3194	-0.00059411	-0.68653	-0.00030913	450.2811119978155	32.199	0.25634	32.199	32.018	32.274	0					12	6	2	0	0	0	0.16806	1	11808	11808		65.465	10.689	1	156050	+		18441	20858	11637	11690	18719	18719					0.09543545936935516
ITGLSLAKP	9	Unmodified	_ITGLSLAKP_					0	0	0			REV__MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant	REV__MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.28143310546875	2	450.28166	898.548768	-0.4016	-0.00018083	-0.14269	-6.4253E-05	-0.54429	-0.00024508	450.28154072744087	32.101	0.31752	32.101	31.918	32.236	0					13	6	3	0	0	0	0.1424	1	12096	12096		69.628	4.1622	1	153660	+		18442	20858	11637	11690	18720	18720					0.09543545936935516
ITGNMGLAMK	10	Unmodified	_ITGNMGLAMK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000488965.1_1_1:53516256-53516373:+|nuORF;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2708129882812	2	518.269912	1034.52527	1.3399	0.00069441	-1.0204	-0.00052883	0.31949	0.00016558	518.2696864248154	31.739	0.21623	31.739	31.654	31.871	0					12	5	3	0	0	0	0.14893	1	11581	11581		95.815	27.028	1	315230			18443	2967	11638	11691	18721	18721					0.009390408364652103
ITGNMGLAMK	10	Unmodified	_ITGNMGLAMK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000488965.1_1_1:53516256-53516373:+|nuORF;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2705688476562	2	518.269912	1034.52527	0.25066	0.00012991	-0.11733	-6.0807E-05	0.13333	6.9101E-05	518.2698741513523	31.707	0.16815	31.707	31.617	31.786	0					6	3	2	0	0	0	0.51765	1	11882	11882		54.722	12.326	1	142150			18444	2967	11638	11691	18722	18722					0.009390408364652103
ITGPNMGGK	9	Unmodified	_ITGPNMGGK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2;MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant;MSH3|p.N1020Ifs*40|1|0.46|ENSG00000113318|chr5:80864865-80864865|A/-|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7259521484375	2	437.726195	873.437837	-0.56768	-0.00024849	-0.30784	-0.00013475	-0.87552	-0.00038324	437.7262014593686	21.89	0.41812	21.89	21.636	22.054	0					24	8	4	0	0	0	0.42902	1	7188	7188		39.253	0.44669	1	544490			18445	1891;2793	11639	11692	18723	18723					-0.003944170427757854
ITGPNMGGK	9	Unmodified	_ITGPNMGGK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2;MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant;MSH3|p.N1020Ifs*40|1|0.46|ENSG00000113318|chr5:80864865-80864865|A/-|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.72601318359375	2	437.726195	873.437837	0.70005	0.00030643	-1.2955	-0.0005671	-0.5955	-0.00026067	437.7257603614076	21.879	0.41826	21.879	21.67	22.089	0					20	8	3	0	0	0	0.30951	1	7206	7206		49.442	0.23076	1	704200			18446	1891;2793	11639	11692	18724	18724					-0.003944170427757854
ITGQRLWVD	9	Unmodified	_ITGQRLWVD_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2982177734375	2	544.298373	1086.58219	0.43623	0.00023744	0.55973	0.00030466	0.99597	0.0005421	544.2986395531138	34.281	0.61213	34.281	33.913	34.525	0					40	26	2	0	0	0	0.45358	1	11537	11537		37.159	1.5408	1	141640			18447	8044;11109	11640	11693	18725	18725					0.04236547708865146
ITGSQIQL	8	Unmodified	_ITGSQIQL_					0	0	0		ENST00000502746.5_1_12:112143706-112153699:+|nuORF	ENST00000502746.5_1_12:112143706-112153699:+|nuORF	ENST00000502746.5_1_12:112143706-112153699:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2476806640625	2	430.247818	858.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.636	1	24.636	24.136	25.136	0								0	0	0	1.7419	1	7713	7713		68.787	0	1				18448	10160	11641	11694	18726	18726					0.046180960061633414
ITGTGNQIV	9	Unmodified	_ITGTGNQIV_					0	0	0			REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7512512207031	2	451.750724	901.486896	0.40739	0.00018404	0.18326	8.2789E-05	0.59065	0.00026683	451.75079134571894	26.519	0.36751	26.519	26.302	26.67	0					17	8	3	0	0	0	0.30951	1	8507	8507		49.442	0	1	223660	+		18449	15631	11642	11695	18727	18727					0.032211945178119095
ITGTNVVKK	9	Unmodified	_ITGTNVVKK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2975769042969	2	480.297842	958.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.633	1	17.633	17.133	18.133	0								0	0	0	0.024201	1	5123	5123		98.629	13.714	1				18450	1085	11643	11696	18728	18728					0.10018333339951369
ITGTTIAG	8	Unmodified	_ITGTTIAG_					0	0	0			REV__KANSL3|p.S774I|1|0.06|ENSG00000114982|chr2:96602277-96602277|C/A|missense_variant	REV__KANSL3|p.S774I|1|0.06|ENSG00000114982|chr2:96602277-96602277|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.2086486816406	2	367.208161	732.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.488	1	14.488	13.988	14.988	0								0	0	0	1.7419	1	3540	3540		26.796	6.3143	1		+		18451	20773	11644	11697	18729	18729					0.024864490520030813
ITGYIVEKK	9	Unmodified	_ITGYIVEKK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8135375976562	2	525.813325	1049.6121	0.18954	9.9665E-05	0.18514	9.7349E-05	0.37468	0.00019701	525.8134775767653	35.098	0.19841	35.098	35.015	35.214	0					8	5	2	0	0	0	0.49718	1	13582	13582		25.574	5.5773	1	152850			18452	5134;11594	11645	11698	18730	18730					0.08927486654192762
ITHAVVIKK	9	Unmodified	_ITHAVVIKK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.89007568359375	3	336.890327	1007.64915	0.37196	0.00012531	-1.0887	-0.00036676	-0.71671	-0.00024145	336.8899153849956	17.734	0.079441	17.734	17.662	17.741	0					4	2	2	0	0	0	0.22837	1	4283	4283		58.23	26.7	1	39811			18453	6998	11646	11699	18731	18731					0.14563202990609625
ITHAVVIKK	9	Unmodified	_ITHAVVIKK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.89031982421875	3	336.890327	1007.64915	0.66094	0.00022266	-0.49435	-0.00016654	0.16659	5.6123E-05	336.8901625795342	18.041	0.19973	18.041	17.942	18.142	0					8	4	3	0	0	0	0.27249	1	5218	5218		52.937	6.9645	1	495980			18454	6998	11646	11699	18732	18732					0.14563202990609625
ITHAVVIKK	9	Unmodified	_ITHAVVIKK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.8319091796875	2	504.831852	1007.64915	-0.053041	-2.6777E-05	0.068852	3.4759E-05	0.015812	7.9824E-06	504.8319375798371	18.033	0.15633	18.033	17.926	18.082	0					5	3	2	0	0	0	0.029571	1	5206	5206		104.06	56.399	1	1179600			18455	6998	11646	11699	18733	18733					0.14563202990609625
ITHEFQATY	9	Unmodified	_ITHEFQATY_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.267578125	2	555.266739	1108.51892	1.8135	0.001007	-0.76559	-0.00042511	1.0479	0.00058185	555.2661720384633	37.118	0.27013	37.118	37.032	37.302	0					16	7	3	0	0	0	0.33044	1	14037	14037		47.657	6.8792	1	205360	+		18456	13954	11647	11700	18734	18734					-0.030994377990509747
ITHFVTSVVF	10	Unmodified	_ITHFVTSVVF_					0	0	0			REV__nc|ENSG00000136297|Q8IY49-3|MMD2	REV__nc|ENSG00000136297|Q8IY49-3|MMD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.3207397460938	2	575.318774	1148.623	-0.098373	-5.6596E-05	2.6111	0.0015022	2.5127	0.0014456	575.3206651885595	24.9	1.6386	24.9	24.814	26.453	0					68	37	3	0	0	0	0.42631	1	8467	8467		53.351	0.41475	1	467340	+		18457	14857	11648	11701	18735	18735					0.054628890284675435
ITHLPSAPE	9	Unmodified	_ITHLPSAPE_					0	0	0			REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7579040527344	2	482.758549	963.502546	0.57815	0.00027911	-1.1134	-0.00053751	-0.53527	-0.00025841	482.75823730034955	32.986	0.52587	32.986	32.668	33.194	0					19	14	2	0	0	0	0.18605	1	12171	12171		63.306	6.5852	1	483790	+		18458	17235	11649	11702	18736	18736					0.01933481034848228
ITHSDKIY	8	Unmodified	_ITHSDKIY_					0	0	0		GRM1|p.A256T|1|0.62|ENSG00000152822|chr6:146159413-146159413|G/A|missense_variant	GRM1|p.A256T|1|0.62|ENSG00000152822|chr6:146159413-146159413|G/A|missense_variant	GRM1|p.A256T|1|0.62|ENSG00000152822|chr6:146159413-146159413|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.758544921875	2	488.758549	975.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.416	1	35.416	34.916	35.916	0								0	0	0	1.7419	1	13279	13279		31.955	0	1				18459	11170	11650	11703	18737	18737					0.013814810348549145
ITIDKATGK	9	Unmodified	_ITIDKATGK_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7816162109375	2	473.782025	945.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.362	1	19.362	18.862	19.862	0								0	0	0	0.12601	1	6107	6107		65.465	12.529	1				18460	6946	11651	11704	18738	18738					0.07454340586002672
ITIDKATGK	9	Unmodified	_ITIDKATGK_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.78179931640625	2	473.782025	945.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.191	1	19.191	18.691	19.691	0								0	0	0	0.12732	1	5163	5163		65.157	13.965	1				18461	6946	11651	11704	18739	18739					0.07454340586002672
ITIDKATGK	9	Unmodified	_ITIDKATGK_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.78192138671875	2	473.782025	945.549496	-0.58907	-0.00027909	0.34299	0.0001625	-0.24608	-0.00011659	473.78222272013437	19.301	0.1646	19.301	19.196	19.36	0					7	3	3	0	0	0	0.034688	1	5953	5953		104.42	34.796	1	378520			18462	6946	11651	11704	18740	18740					0.07454340586002672
ITIERIGA	8	Unmodified	_ITIERIGA_					0	0	0			REV__CON__Q9DCV7	REV__CON__Q9DCV7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.763427734375	2	436.763635	871.512717	0.757	0.00033063	-1.3101	-0.00057221	-0.55311	-0.00024158	436.76312015687284	17.845	0.2704	17.845	17.634	17.904	0					8	5	2	0	0	0	0.28427	1	5383	5383		87.754	8.3033	1	723600	+	+	18463	12619	11652	11705	18741	18741					0.071820887600893
ITIRRNICE	9	Unmodified	_ITIRRNICE_					0	0	0		ENST00000373304.3_1_X:77538973-77539003:-|nuORF;ENST00000373304.3_1_X:77529238-77539002:-|nuORF	ENST00000373304.3_1_X:77538973-77539003:-|nuORF	ENST00000373304.3_1_X:77538973-77539003:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.20989990234375	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.872	1	29.872	29.372	30.372	0								0	0	0	0.35377	1	9763	9763		24.519	8.5124	1				18464	8991	11653	11706	18742	18742					0.05372279239782074
ITITFVAHS	9	Unmodified	_ITITFVAHS_					0	0	0			REV__KIF15|p.D274Ifs*7|1|0.39|ENSG00000163808|chr3:44794392-44794392|A/-|frameshift_variant	REV__KIF15|p.D274Ifs*7|1|0.39|ENSG00000163808|chr3:44794392-44794392|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7750244140625	2	494.776742	987.538931	-0.042718	-2.1136E-05	-3.9438	-0.0019513	-3.9865	-0.0019724	494.774892133006	27.523	0.16414	27.523	27.422	27.586	0					7	3	3	0	0	0	0.37197	1	9995	9995		44.117	0	1	87762	+		18465	15919	11654	11707	18743	18743					0.0446635793156247
ITKEKLHTI	9	Unmodified	_ITKEKLHTI_					0	0	0		CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290;CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant;CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.M1079Cfs*9|1|0.24|ENSG00000198707|chr12:88093844-88093844|T/-|frameshift_variant;CEP290|p.E1553Kfs*4|1|0.52|ENSG00000198707|chr12:88084634-88084634|T/-|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.55712890625	3	361.557125	1081.64954	1.1812	0.00042707	-1.0317	-0.00037303	0.14945	5.4036E-05	361.55664966280153	27.195	0.57438	27.195	27.087	27.662	0					29	11	3	0	0	0	0.42902	1	9716	9716		39.253	1.7447	1	1112700			18466	484	11655	11708	18744	18744					0.1119857791979939
ITKMKMKKQ	9	Unmodified	_ITKMKMKKQ_					0	0	0		ENST00000343505.9_2_6:138768140-138794549:-|nuORF	ENST00000343505.9_2_6:138768140-138794549:-|nuORF	ENST00000343505.9_2_6:138768140-138794549:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2289123535156	3	379.227845	1134.66171	3.244	0.0012302	-0.17832	-6.7623E-05	3.0657	0.0011626	379.22778911316817	25.44	0.60695	25.44	25.23	25.837	0					22	10	4	0	0	0	0.41113	1	8893	8893		40.778	40.778	1	3940800			18467	8747	11656	11709	18745	18745					0.09976155066988213
ITKNLSALYL	10	Unmodified	_ITKNLSALYL_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|28|1|sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|28|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.2289123535156	3	379.228897	1134.66486	0.019675	7.4612E-06	0.32557	0.00012346	0.34524	0.00013093	379.2291532338272	25.222	0.22682	25.222	25.11	25.337	0					8	6	2	0	0	0	0.65895	1	7569	7569		27.047	1.4733	1	213400	+		18468	20831	11657	11710	18746	18746					0.10291444716972364
ITKNLSALYL	10	Unmodified	_ITKNLSALYL_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|28|1|sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|28|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.2288818359375	3	379.228897	1134.66486	0.5465	0.00020725	0.17912	6.7926E-05	0.72562	0.00027518	379.2288611638393	25.5	0.9967	25.5	25.188	26.185	0					24	18	2	0	0	0	0.536	1	9067	9067		41.427	6.2484	1	2927300	+		18469	20831	11657	11710	18747	18747					0.10291444716972364
ITKSYTTN	8	Unmodified	_ITKSYTTN_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.242431640625	2	464.242732	926.470912	-0.14127	-6.5583E-05	-0.47311	-0.00021964	-0.61438	-0.00028522	464.2425620750091	20.888	0.16448	20.888	20.83	20.995	0					5	3	2	0	0	0	0.46905	1	6854	6854		63.306	3.0123	1	200600	+		18470	14960	11658	11711	18748	18748					0.0047348828089752715
ITKVIVLAE	9	Unmodified	_ITKVIVLAE_					0	0	0		ENST00000604297.1_1_X:46421090-46422044:-|nuORF	ENST00000604297.1_1_X:46421090-46422044:-|nuORF	ENST00000604297.1_1_X:46421090-46422044:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.3189697265625	2	493.318243	984.621933	0.86773	0.00042807	-0.28368	-0.00013994	0.58405	0.00028812	493.31830455736184	42.956	0.13896	42.956	42.896	43.035	0					6	4	2	0	0	0	0.55379	1	17176	17176		26.693	0	1	133240			18471	11063	11659	11712	18749	18749					0.12900674659545075
ITLASESQHI	10	Unmodified	_ITLASESQHI_					0	0	0		nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;ENSG00000262209|ENST00000576222|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.7908935546875	2	549.793121	1097.57169	-1.459	-0.00080214	-2.8606	-0.0015727	-4.3196	-0.0023749	549.7916922729518	11.373	0.085631	11.373	11.343	11.429	0					9	5	2	0	0	0	0.6796	1	2153	2153		24.519	3.5723	1	61086			18472	8055	11660	11713	18750	18750					0.02680520263766084
ITLATVLS	8	Unmodified	_ITLATVLS_					0	0	0		HTR1D|p.P173Rfs*18|1|0.14|ENSG00000179546|chr1:23193702-23193702|G/-|frameshift_variant;ENSG00000179546|ENST00000374619|HTR1D	HTR1D|p.P173Rfs*18|1|0.14|ENSG00000179546|chr1:23193702-23193702|G/-|frameshift_variant	HTR1D|p.P173Rfs*18|1|0.14|ENSG00000179546|chr1:23193702-23193702|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.255615234375	2	409.255111	816.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.697	1	47.697	47.197	48.197	0								0	0	0	1.7419	1	14578	14578		52.299	7.7681	1				18473	6772	11661	11714	18751	18751					0.08008168154276518
ITLELQKQ	8	Unmodified	_ITLELQKQ_					0	0	0		ENST00000560591.5_1_15:67835673-67951132:+|nuORF;nc|ENSG00000137764|Q13163-4|MAP2K5;nc|ENSG00000137764|Q13163-2|MAP2K5;nc|ENSG00000137764|Q13163-3|MAP2K5;ENSG00000137764|ENST00000178640|MAP2K5	ENST00000560591.5_1_15:67835673-67951132:+|nuORF	ENST00000560591.5_1_15:67835673-67951132:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7895812988281	2	486.78985	971.565146	-2.9124	-0.0014177	1.8244	0.00088812	-1.0879	-0.00052959	486.79069814366005	23.71	0.25118	23.71	23.462	23.713	0					11	6	2	0	0	0	0.72381	1	7270	7270		30.504	3.7075	1	144720			18474	4191	11662	11715	18752	18752					0.07822627103053037
ITLIGLFFAGI	11	Unmodified	_ITLIGLFFAGI_					0	0	0		ENST00000566482.5_1_16:50060318-50068094:+|nuORF;ENSG00000205423|ENST00000427478|CNEP1R1;nc|ENSG00000205423|Q8N9A8-2|CNEP1R1	ENST00000566482.5_1_16:50060318-50068094:+|nuORF	ENST00000566482.5_1_16:50060318-50068094:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.9043884277344	3	388.905754	1163.69543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.281	1	17.281	16.781	17.781	0								0	0	0	0.39826	1	4957	4957		37.508	8.3381	1				18475	7751	11663	11716	18753	18753					0.12013223102030679
ITLKKEDMI	9	Unmodified	_ITLKKEDMI_					0	0	0		tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.8134765625	2	545.812467	1089.61038	1.9903	0.0010863	-0.04631	-2.5277E-05	1.944	0.0010611	545.812661679596	37.234	0.24631	37.234	37.119	37.365	0					26	12	3	0	0	0	0.21263	1	13313	13313		44.117	0	1	169440			18476	22936	11664	11717	18754	18754					0.06916109573921858
ITLQEVVSH	9	Unmodified	_ITLQEVVSH_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.28515625	2	513.284931	1024.55531	0.087485	4.4905E-05	0.792	0.00040652	0.87949	0.00045143	513.285338024642	22.398	0.16851	22.398	22.287	22.455	0					7	3	3	0	0	0	0.25109	1	7458	7458		55.504	2.1528	1	236560			18477	6989	11665	11718	18755	18755					0.04401439097682669
ITLTPVRP	8	Unmodified	_ITLTPVRP_					0	0	0		nc|ENSG00000164877|Q8IY33-2|MICALL2;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF	nc|ENSG00000164877|Q8IY33-2|MICALL2	nc|ENSG00000164877|Q8IY33-2|MICALL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.7816162109375	2	448.781828	895.549102	-0.45459	-0.00020401	0.19917	8.9385E-05	-0.25542	-0.00011463	448.781811396604	20.493	0.55976	20.493	20.05	20.61	0					27	12	3	0	0	0	0.65276	1	6390	6390		40.573	5.3719	1	254730			18478	5737	11666	11719	18756	18756					0.09714965656814911
ITLVDNTI	8	Unmodified	_ITLVDNTI_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.75494384765625	2	444.755475	887.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.623	1	28.623	28.123	29.123	0								0	0	0	1.7419	1	9525	9525		71.296	2.5089	1				18479	11644	11667	11720	18757	18757					0.04814962803345679
ITMKDPLGAP	10	Unmodified	_ITMKDPLGAP_					0	0	0			REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.78271484375	2	521.78371	1041.55287	0.078806	4.112E-05	-2.6261	-0.0013703	-2.5473	-0.0013292	521.7821941869157	39.38	0.17673	39.38	39.308	39.484	0					10	6	2	0	0	0	0.50881	1	15007	15007		44.377	0.26039	1	70651	+		18480	14112	11668	11721	18758	18758					0.03375267368346613
ITMLGLGCTV	10	Carbamidomethyl (C),Oxidation (M)	_ITM(Oxidation (M))LGLGC(Carbamidomethyl (C))TV_	ITMLGLGC(1)TV	ITM(1)LGLGCTV	ITMLGLGC(96)TV	ITM(96)LGLGCTV	0	1	1		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7756958007812	2	540.775028	1079.5355	3.5054	0.0018956	-3.0762	-0.0016635	0.42913	0.00023206	540.7734389169417	30.639	0.55362	30.639	30.261	30.814	0					29	11	5	0	0	0	0.095632	1	11385	11385		96.19	8.4361	1	2362600			18481	4663	11669	11722	18759	18759	196	194			-0.0010839622896128276
ITNDGATILK	10	Unmodified	_ITNDGATILK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;ENSG00000115484|ENST00000394440|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000120438|ENST00000321394|TCP1;ENSG00000115484|ENST00000394440|CCT4	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.8002319335938	2	523.298039	1044.58152	1.4929	0.00078125	-0.68878	-0.00036043	0.80417	0.00042082	523.2976395027154	28.067	0.17632	28.067	27.988	28.165	0					16	6	3	0	0	0	0.026945	1	8709	8709		120.27	19.02	1	342020			18482	3170;2913	11670	11723	18760	18760					0.06101708269147821
ITNDGATILK	10	Unmodified	_ITNDGATILK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;ENSG00000115484|ENST00000394440|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000120438|ENST00000321394|TCP1;ENSG00000115484|ENST00000394440|CCT4	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2984008789062	2	523.298039	1044.58152	1.7111	0.00089544	-1.384	-0.00072426	0.32711	0.00017118	523.2973760842996	28.333	0.28657	28.333	28.25	28.537	0					18	7	3	0	0	0	0.0036876	1	9995	9995		169.99	51.25	1	2339500			18483	3170;2913	11670	11723	18761	18761					0.06101708269147821
ITNDGATILK	10	Unmodified	_ITNDGATILK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;ENSG00000115484|ENST00000394440|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000120438|ENST00000321394|TCP1;ENSG00000115484|ENST00000394440|CCT4	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2986450195312	2	523.298039	1044.58152	0.48916	0.00025598	0.1839	9.6233E-05	0.67306	0.00035221	523.2983271590975	28.091	0.22394	28.091	27.987	28.211	0					22	8	4	0	0	0	0.34979	1	9038	9038		61.765	5.3308	1	310610			18484	3170;2913	11670	11723	18762	18762					0.06101708269147821
ITNDGATILK	10	Unmodified	_ITNDGATILK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;ENSG00000115484|ENST00000394440|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000120438|ENST00000321394|TCP1;ENSG00000115484|ENST00000394440|CCT4	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2981567382812	2	523.298039	1044.58152	1.5414	0.00080661	-1.7454	-0.00091338	-0.20403	-0.00010677	523.2972636676672	28.15	0.22749	28.15	28.043	28.27	0					8	5	3	0	0	0	0.06456	1	9302	9302		104.42	5.8416	1	118540			18485	3170;2913	11670	11723	18763	18763					0.06101708269147821
ITNDGATILK	10	Unmodified	_ITNDGATILK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;ENSG00000115484|ENST00000394440|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000120438|ENST00000321394|TCP1;ENSG00000115484|ENST00000394440|CCT4	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.29833984375	2	523.298039	1044.58152	1.106	0.00057879	-0.60285	-0.00031547	0.50319	0.00026332	523.2976719355572	28.151	0.30548	28.151	28.032	28.337	0					12	7	3	0	0	0	0.0074017	1	9293	9293		156.16	46.041	1	434300			18486	3170;2913	11670	11723	18764	18764					0.06101708269147821
ITNDGATILK	10	Unmodified	_ITNDGATILK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;ENSG00000115484|ENST00000394440|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant	ENSG00000120438|ENST00000321394|TCP1;ENSG00000115484|ENST00000394440|CCT4	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2984619140625	2	523.298039	1044.58152	0.4731	0.00024757	-0.79556	-0.00041631	-0.32245	-0.00016874	523.2979522476056	28.269	0.36583	28.269	28.16	28.526	0					17	7	4	0	0	0	0.0012279	1	10231	10231		180.09	39.978	1	1073400			18487	3170;2913	11670	11723	18765	18765					0.06101708269147821
ITNFALFCL	9	Unmodified	_ITNFALFCL_					0	0	0		ENST00000543796.5_2_12:131361250-131361346:+|nuORF	ENST00000543796.5_2_12:131361250-131361346:+|nuORF	ENST00000543796.5_2_12:131361250-131361346:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.8514099121094	3	347.852773	1040.53649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.267	1	23.267	22.767	23.767	0								0	0	0	0.3245	1	7993	7993		30.318	6.795	1				18488	10562	11671	11724	18766	18766					0.017841862022578425
ITNSRPPC	8	Unmodified	_ITNSRPPC_					0	0	0		ENSG00000141741|ENST00000394231|MIEN1;FBXL20-MIEN1|1|fusion	ENSG00000141741|ENST00000394231|MIEN1	ENSG00000141741|ENST00000394231|MIEN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2234802246094	2	444.22382	886.433086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.184	1	25.184	24.684	25.684	0								0	0	0	1.7419	1	7969	7969		44.117	1.7207	1				18489	4468	11672	11725	18767	18767					-0.014673011855620643
ITPLHDALN	9	Unmodified	_ITPLHDALN_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2708740234375	2	497.271824	992.529095	0.99515	0.00049486	-2.4797	-0.0012331	-1.4846	-0.00073823	497.2706936223011	39.962	0.19169	39.962	39.912	40.104	0					6	4	2	0	0	0	0.47038	1	15846	15846		35.618	2.1027	1	56333			18490	5393	11673	11726	18768	18768					0.03253169926165356
ITPRVAVPT	9	Unmodified	_ITPRVAVPT_					0	0	0		ENST00000427762.1_1_1:59096724-59097153:-|nuORF	ENST00000427762.1_1_1:59096724-59097153:-|nuORF	ENST00000427762.1_1_1:59096724-59097153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2957763671875	2	477.292559	952.570566	0.0086937	4.1494E-06	0.21628	0.00010323	0.22497	0.00010738	477.2927596685822	30.504	0.83269	30.504	30.193	31.025	0					55	32	2	0	0	0	0.42902	1	9662	9662		39.253	0.44669	1	248070			18491	9459	11674	11727	18769	18769					0.09238350685518526
ITPVLTFLK	9	Unmodified	_ITPVLTFLK_					0	0	0			REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.3269653320312	2	516.328611	1030.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.756	1	17.756	17.256	18.256	0								0	0	0	0.3428	1	5330	5330		26.693	1.2427	1		+		18492	22059	11675	11728	18770	18770					0.12857265039201593
ITQAVLGAHY	10	Unmodified	_ITQAVLGAHY_					0	0	0		EML2|p.D294Y|1|0.19|ENSG00000125746|chr19:45621599-45621599|C/A|missense_variant	EML2|p.D294Y|1|0.19|ENSG00000125746|chr19:45621599-45621599|C/A|missense_variant	EML2|p.D294Y|1|0.19|ENSG00000125746|chr19:45621599-45621599|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.1975402832031	3	358.197708	1071.57129	-2.0291	-0.00072682	1.315	0.00047102	-0.71413	-0.0002558	358.1979594870642	27.916	0.28701	27.916	27.816	28.103	0					11	7	2	0	0	0	0.70877	1	9198	9198		20.03	8.3945	1	92069			18493	911	11676	11729	18771	18771					0.03837145334568959
ITQEMQTLK	9	Unmodified	_ITQEMQTLK_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.292236328125	2	546.291899	1090.56925	1.8608	0.0010165	-1.4141	-0.00077249	0.44673	0.00024404	546.2911984651748	26.289	0.21465	26.289	26.164	26.379	0					14	5	4	0	0	0	0.014648	1	9044	9044		131.12	15.622	1	672790			18494	2268	11677	11730	18772	18772					0.027583485344621295
ITQEMQTLK	9	Unmodified	_ITQEMQTLK_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2926025390625	2	546.291899	1090.56925	1.9813	0.0010824	-1.781	-0.00097296	0.20024	0.00010939	546.2911254842329	26.108	0.097425	26.108	26.052	26.15	0					4	2	2	0	0	0	0.13109	1	8364	8364		72.243	2.6156	1	77639			18495	2268	11677	11730	18773	18773					0.027583485344621295
ITQEMQTLK	9	Unmodified	_ITQEMQTLK_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7943725585938	2	546.291899	1090.56925	1.1254	0.00061479	0.52616	0.00028744	1.6515	0.00090223	546.2922174072739	26.106	0.091747	26.106	26.041	26.133	0					4	2	2	0	0	0	0.12278	1	8360	8360		74.165	19.443	1	75833			18496	2268	11677	11730	18774	18774					0.027583485344621295
ITQEMQTLK	9	Unmodified	_ITQEMQTLK_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2923583984375	2	546.291899	1090.56925	0.55174	0.00030141	0.33087	0.00018075	0.88262	0.00048217	546.2920669953174	26.21	0.1643	26.21	26.151	26.315	0					8	3	3	0	0	0	0.0059342	1	9242	9242		154.01	36.2	1	450770			18497	2268	11677	11730	18775	18775					0.027583485344621295
ITQEMQTLK	9	Unmodified	_ITQEMQTLK_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.292236328125	2	546.291899	1090.56925	1.9222	0.0010501	-2.3082	-0.0012609	-0.38598	-0.00021086	546.2908648815903	26.242	0.2154	26.242	26.134	26.349	0					9	4	3	0	0	0	0.029172	1	9260	9260		109.83	13.796	1	781000			18498	2268	11677	11730	18776	18776					0.027583485344621295
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.3158569335938	2	559.31422	1116.61389	1.4297	0.00079963	0.061821	3.4578E-05	1.4915	0.00083421	559.3144432277589	14.74	0.08041	14.74	14.685	14.765	0					5	3	2	0	0	0	0.16013	1	3092	3092		79.07	12.108	1	30156			18499	4386	11678	11731	18777	18777					0.06024495672136254
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3145141601562	2	559.31422	1116.61389	1.7982	0.0010058	-1.2874	-0.00072008	0.51078	0.00028568	559.313472448054	15.028	0.10401	15.028	14.98	15.084	0					4	2	2	0	0	0	5.234E-05	1	3804	3804		160.91	54.23	1	902720			18500	4386	11678	11731	18778	18778					0.06024495672136254
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.31494140625	2	559.31422	1116.61389	0.12272	6.8637E-05	1.9787	0.0011067	2.1014	0.0011754	559.3151871095125	14.764	0.056331	14.764	14.745	14.801	0					6	3	2	0	0	0	0.11438	1	3254	3254		86.189	43.851	1	57842			18501	4386	11678	11731	18779	18779					0.06024495672136254
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3143920898438	2	559.31422	1116.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.012	1	15.012	14.512	15.512	0								0	0	0	4.6385E-05	1	4019	4019		139.31	51.13	1				18502	4386	11678	11731	18780	18780					0.06024495672136254
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.3152465820312	2	559.31422	1116.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.808	1	14.808	14.308	15.308	0								0	0	0	0.12082	1	3208	3208		72.096	8.5617	1				18503	4386	11678	11731	18781	18781					0.06024495672136254
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3145751953125	2	559.31422	1116.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.998	1	14.998	14.498	15.498	0								0	0	0	0.15	1	3858	3858		68.626	12.192	1				18504	4386	11678	11731	18782	18782					0.06024495672136254
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.314697265625	2	559.31422	1116.61389	1.8261	0.0010214	0.60273	0.00033712	2.4289	0.0013585	559.3134643387714	15.003	0.11838	15.003	14.894	15.012	0					4	2	2	0	0	0	0.00013565	1	3852	3852		144.7	54.097	1	339790			18505	4386	11678	11731	18783	18783					0.06024495672136254
ITQRGNVAK	9	Unmodified	_ITQRGNVAK_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7901611328125	2	493.790715	985.566878	-0.085589	-4.2263E-05	-0.47352	-0.00023382	-0.55911	-0.00027608	493.790455829407	13.648	0.13053	13.648	13.593	13.723	0					17	7	3	0	0	0	0.073657	1	2697	2697		80.455	32.797	1	635790			18506	3191	11679	11732	18784	18784					0.07351680911665426
ITQRGNVAK	9	Unmodified	_ITQRGNVAK_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.79119873046875	2	493.790715	985.566878	0.26151	0.00012913	-0.17514	-8.648E-05	0.086371	4.2649E-05	493.79065973278637	13.697	0.18877	13.697	13.64	13.828	0					18	10	3	0	0	0	0.015992	1	2784	2784		101.25	53.595	1	453520			18507	3191	11679	11732	18785	18785					0.07351680911665426
ITQRGNVAK	9	Unmodified	_ITQRGNVAK_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7902526855469	2	493.790715	985.566878	0.024559	1.2127E-05	0.048487	2.3942E-05	0.073045	3.6069E-05	493.790689880818	13.694	0.1521	13.694	13.634	13.786	0					13	8	2	0	0	0	0.090954	1	2782	2782		65.465	26.213	1	363460			18508	3191	11679	11732	18786	18786					0.07351680911665426
ITQRGNVAK	9	Unmodified	_ITQRGNVAK_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.5296630859375	3	329.529569	985.566878	-1.9068	-0.00062835	1.7621	0.00058068	-0.14465	-4.7667E-05	329.5301118066166	13.682	0.066194	13.682	13.663	13.729	0					5	3	2	0	0	0	0.36892	1	2787	2787		44.377	9.2252	1	71156			18509	3191	11679	11732	18787	18787					0.07351680911665426
ITQRGNVAK	9	Unmodified	_ITQRGNVAK_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.79046630859375	2	493.790715	985.566878	-0.62437	-0.00030831	0.019759	9.7569E-06	-0.60461	-0.00029855	493.79074640754595	13.872	0.35405	13.872	13.817	14.171	0					17	7	4	0	0	0	0.01942	1	3333	3333		106.68	37.896	1	2472700			18510	3191	11679	11732	18788	18788					0.07351680911665426
ITQRGNVAK	9	Unmodified	_ITQRGNVAK_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.5293884277344	3	329.529569	985.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.936	1	13.936	13.436	14.436	0								0	0	0	0.25587	1	3354	3354		42.864	7.246	1				18511	3191	11679	11732	18789	18789					0.07351680911665426
ITQTIKCSHE	10	Unmodified	_ITQTIKCSHE_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.1985168457031	3	387.197379	1158.57031	0.85752	0.00033203	2.4309	0.00094123	3.2884	0.0012733	387.19824777521103	16.862	0.13243	16.862	16.78	16.913	0					6	3	2	0	0	0	0.63851	1	4669	4669		29.551	2.5034	1	276050			18512	5853	11680	11733	18790	18790					-0.0026343709664615744
ITQYPHAVGK	10	Unmodified	_ITQYPHAVGK_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.3079223632812	2	557.306198	1112.59784	1.2971	0.00072289	-0.48317	-0.00026927	0.81395	0.00045362	557.3065034561537	20.488	0.09413	20.488	20.425	20.52	0					6	3	2	0	0	0	0.28675	1	5486	5486		68.846	7.1549	1	102420			18513	7963	11681	11734	18791	18791					0.04604834225892773
ITQYPHAVGK	10	Unmodified	_ITQYPHAVGK_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.3062744140625	2	557.306198	1112.59784	0.55108	0.00030712	-0.43444	-0.00024212	0.11664	6.5002E-05	557.3060513661875	20.79	0.16344	20.79	20.685	20.848	0					9	3	3	0	0	0	0.12383	1	6521	6521		91.265	27.058	1	730560			18514	7963	11681	11734	18792	18792					0.04604834225892773
ITQYPHAVGK	10	Unmodified	_ITQYPHAVGK_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.3065795898438	2	557.306198	1112.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.732	1	20.732	20.232	21.232	0								0	0	0	0.051595	1	6764	6764		90.601	10.888	1				18515	7963	11681	11734	18793	18793					0.04604834225892773
ITRISYEII	9	Unmodified	_ITRISYEII_					0	0	0		tr|U7SWS5|U7SWS5_FUSNUBifunctionalproteinPyrROS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrRPE=3SV=1	tr|U7SWS5|U7SWS5_FUSNUBifunctionalproteinPyrROS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrRPE=3SV=1	tr|U7SWS5|U7SWS5_FUSNUBifunctionalproteinPyrROS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrRPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.88519287109375	3	369.88513	1106.63356	3.1923	0.0011808	-3.668	-0.0013567	-0.47568	-0.00017595	369.8840625960488	23.209	1.6066	23.209	23.1	24.707	0					99	32	5	0	0	0	0.21263	1	7826	7826		60.118	1.872	1	89224000			18516	22860	11682	11735	18794	18794					0.08450871682885008
ITRMMGKQ	8	Unmodified	_ITRMMGKQ_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.75762939453125	2	482.756972	963.499392	3.476	0.0016781	-1.3597	-0.00065642	2.1163	0.0010216	482.7562948516271	32.758	0.22906	32.758	32.639	32.868	0					12	8	2	0	0	0	0.8006	1	10967	10967		20.482	1.1219	1	45540	+		18517	21074	11683	11736	18795	18795					0.016181913848527074
ITSALNQL	8	Unmodified	_ITSALNQL_					0	0	0		PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant;ENSG00000133056|ENST00000684373|PIK3C2B	PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.24786376953125	2	430.247818	858.481082	0.18113	7.7932E-05	0.063877	2.7483E-05	0.24501	0.00010542	430.2477686822702	24.534	0.22946	24.534	24.435	24.664	0					11	6	3	0	0	0	0.41701	1	7254	7254		68.787	4.5796	1	84083			18518	3833	11684	11737	18796	18796					0.04618096006140604
ITSALNQL	8	Unmodified	_ITSALNQL_					0	0	0		PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant;ENSG00000133056|ENST00000684373|PIK3C2B	PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.24755859375	2	430.247818	858.481082	0.79255	0.00034099	-1.2399	-0.00053348	-0.44739	-0.00019249	430.2473204877123	24.791	0.29356	24.791	24.698	24.992	0					13	7	2	0	0	0	0.35045	1	8403	8403		76.774	15.802	1	655340			18519	3833	11684	11737	18797	18797					0.04618096006140604
ITSDAAYVIQ	10	Unmodified	_ITSDAAYVIQ_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.782958984375	2	540.782222	1079.54989	0.031733	1.716E-05	2.0454	0.0011061	2.0771	0.0011233	540.7830465655547	36.143	0.13258	36.143	36.075	36.208	0					7	5	2	0	0	0	0.54197	1	12241	12241		40.778	0	1	62986			18520	3105	11685	11738	18798	18798					0.013297155151803963
ITSHHKKNEI	10	Unmodified	_ITSHHKKNEI_					0	0	0			REV__RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant	REV__RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.8897399902344	3	402.891166	1205.65167	-2.265	-0.00091256	-1.6415	-0.00066134	-3.9065	-0.0015739	402.8905941851677	22.56	0.32705	22.56	22.454	22.781	0					17	7	4	0	0	0	0.50287	1	6745	6745		45.022	1.3714	1	335880	+		18521	15862	11686	11739	18799	18799					0.057070066575988676
ITSLHTLPT	9	Unmodified	_ITSLHTLPT_					0	0	0		WDR6|p.N984T|1|0.12|ENSG00000178252|chr3:49014873-49014873|A/C|missense_variant	WDR6|p.N984T|1|0.12|ENSG00000178252|chr3:49014873-49014873|A/C|missense_variant	WDR6|p.N984T|1|0.12|ENSG00000178252|chr3:49014873-49014873|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.7823486328125	2	491.782025	981.549496	-0.052024	-2.5585E-05	-0.15878	-7.8086E-05	-0.21081	-0.00010367	491.7819050097118	25.301	0.50584	25.301	25.042	25.548	0					31	12	4	0	0	0	0.2873	1	8118	8118		51.335	5.3632	1	1486100			18522	23113	11687	11740	18800	18800					0.057983405859772574
ITSPVVTQK	9	Unmodified	_ITSPVVTQK_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7897033691406	2	486.78985	971.565146	0.63699	0.00031008	-1.3305	-0.00064768	-0.69353	-0.0003376	486.78915284189935	23.855	0.36952	23.855	23.545	23.915	0					23	7	4	0	0	0	0.085655	1	8286	8286		82.75	5.9763	1	1512800			18523	2780	11688	11741	18801	18801					0.07822627103053037
ITSREQGIRML	11	Unmodified	_ITSREQGIRML_					0	0	0		nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	652.3610229492188	2	652.361179	1302.7078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.173	1	38.173	37.673	38.673	0								0	0	0	0.45674	1	14493	14493		20.837	0.84038	1				18524	11490	11689	11742	18802	18802					0.06855891502777922
ITSSFQKSR	9	Unmodified	_ITSSFQKSR_					0	0	0		tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.290283203125	2	527.288005	1052.56146	5.257	0.002772	0.62429	0.00032918	5.8813	0.0031011	527.2883084478316	37.317	0.28749	37.317	37.231	37.519	0					25	15	2	0	0	0	0.33044	1	12611	12611		47.657	47.657	1	347920			18525	22669	11690	11743	18803	18803					0.03727957329192577
ITSTDNLIL	9	Unmodified	_ITSTDNLIL_					0	0	0			REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1	REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2799072265625	2	495.279315	988.544076	-0.65732	-0.00032556	2.1381	0.001059	1.4808	0.0007334	495.28066351627336	39.041	0.15926	39.041	38.937	39.096	0					6	3	2	0	0	0	0.48389	1	15388	15388		34.173	0	1	82202	+		18526	21859	11691	11744	18804	18804					0.04934617003527819
ITTAMQPKY	9	Unmodified	_ITTAMQPKY_					0	0	0			REV__tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	REV__tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7772216796875	2	526.775885	1051.53722	1.6283	0.00085775	-0.17836	-9.3957E-05	1.4499	0.00076379	526.7760968924648	43.844	0.29123	43.844	43.699	43.991	0					12	9	3	0	0	0	0.25716	1	17586	17586		54.776	7.119	1	83470	+		18527	21703	11692	11745	18805	18805					0.013509808512935706
ITTITSSQK	9	Unmodified	_ITTITSSQK_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7750244140625	2	489.776939	977.539325	-1.2537	-0.00061401	-1.4623	-0.00071619	-2.7159	-0.0013302	489.7761721222506	27.919	0.23036	27.919	27.762	27.992	0					11	8	2	0	0	0	0.48389	1	8940	8940		34.173	0.67956	1	60123			18528	6748	11693	11746	18806	18806					0.04965732860773642
ITTRQSIE	8	Unmodified	_ITTRQSIE_					0	0	0			REV__nc|ENSG00000082482|O95069-4|KCNK2	REV__nc|ENSG00000082482|O95069-4|KCNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2630310058594	2	474.261456	946.50836	2.3626	0.0011205	1.3971	0.0006626	3.7597	0.0017831	474.26208706995607	40.478	0.37228	40.478	40.376	40.748	0					15	8	3	0	0	0	0.46905	1	16063	16063		63.306	11.971	1	524390	+		18529	13317	11694	11747	18807	18807					0.032965795465202063
ITTVSILCP	9	Unmodified	_ITTVSILCP_					0	0	0		nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH;ENSG00000180902|ENST00000321264|D2HGDH;ENST00000436747.5_1_2:242681986-242688401:+|nuORF	nc|ENSG00000180902|Q8N465-2|D2HGDH	nc|ENSG00000180902|Q8N465-2|D2HGDH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	316.180419921875	3	316.180778	945.520504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.936	1	46.936	46.436	47.436	0								0	0	0	0.34845	1	17982	17982		25.574	8.8567	1				18530	6824	11695	11748	18808	18808					0.04556479965356175
ITTVVLTTNFL	11	Unmodified	_ITTVVLTTNFL_					0	0	0			REV__GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	REV__GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.3563842773438	2	611.358096	1220.70164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.878	1	52.878	52.378	53.378	0								0	0	0	0.45674	1	16188	16188		18.262	3.3972	1		+		18531	15417	11696	11749	18809	18809					0.1001169654291516
ITVEHDNI	8	Unmodified	_ITVEHDNI_					0	0	0			REV__ENSG00000143891|ENST00000272252|GALM	REV__ENSG00000143891|ENST00000272252|GALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.73992919921875	2	470.740357	939.46616	-1.3087	-0.00061604	0.29657	0.00013961	-1.0121	-0.00047644	470.7407039531597	27.905	0.19918	27.905	27.793	27.992	0					12	7	2	0	0	0	0.5535	1	8927	8927		54.776	1.6874	1	170110	+		18532	15215	11697	11750	18810	18810					-0.005993958618546458
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2635192871094	2	450.263468	898.512382	0.54018	0.00024322	-0.6921	-0.00031163	-0.15192	-6.8406E-05	450.2630776734217	31.564	0.15539	31.564	31.453	31.608	0					10	6	2	0	0	0	0.098791	1	10142	10142		79.713	22.992	1	59014			18533	5411	11698	11751	18811	18811					0.05906669040234647
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2633056640625	2	450.263468	898.512382	0.030074	1.3541E-05	-0.61114	-0.00027517	-0.58107	-0.00026163	450.26313495920493	31.561	0.34334	31.561	31.399	31.742	0					33	15	3	0	0	0	0.12834	1	10120	10120		72.879	11.907	1	811680			18534	5411	11698	11751	18812	18812					0.05906669040234647
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2630920410156	2	450.263468	898.512382	-0.10111	-4.5528E-05	-0.45894	-0.00020664	-0.56005	-0.00025217	450.2632344214009	31.772	0.5394	31.772	31.524	32.064	0					36	11	5	0	0	0	0.012231	1	11978	11978		136.27	43.125	1	3439200			18535	5411	11698	11751	18813	18813					0.05906669040234647
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.26318359375	2	450.263468	898.512382	-0.19294	-8.6875E-05	-0.18441	-8.3031E-05	-0.37735	-0.00016991	450.2634583348355	31.561	0.33054	31.561	31.388	31.718	0					17	8	3	0	0	0	0.078509	1	10872	10872		85.161	11.186	1	295770			18536	5411	11698	11751	18814	18814					0.05906669040234647
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2633361816406	2	450.263468	898.512382	-0.40159	-0.00018082	0.022645	1.0196E-05	-0.37894	-0.00017062	450.26344153659466	31.777	0.61556	31.777	31.571	32.186	0					32	12	4	0	0	0	0.02953	1	11877	11877		109.48	38.183	1	5526200			18537	5411	11698	11751	18815	18815					0.05906669040234647
ITVGPRGPL	9	Unmodified	_ITVGPRGPL_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2791748046875	2	455.279452	908.544351	0.72141	0.00032844	-1.3564	-0.00061752	-0.63495	-0.00028908	455.2788092190772	32.969	0.34982	32.969	32.759	33.109	0					20	8	3	0	0	0	0.13267	1	12546	12546		71.877	10.906	1	759750			18538	3231	11699	11752	18816	18816					0.08642081514040001
ITVSCHLKNV	10	Unmodified	_ITVSCHLKNV_					0	0	0			REV__nc|ENSG00000179915|Q9ULB1-3|NRXN1	REV__nc|ENSG00000179915|Q9ULB1-3|NRXN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.8731689453125	3	371.874348	1112.60121	0.91185	0.00033909	-4.1916	-0.0015587	-3.2797	-0.0012197	371.87287716672546	20.721	0.2678	20.721	20.612	20.88	0					12	5	3	0	0	0	0.60281	1	6774	6774		33.922	1.1711	1	674270	+		18539	21143	11700	11753	18817	18817					0.04941761008240064
ITVSERTL	8	Unmodified	_ITVSERTL_					0	0	0			REV__ENSG00000115825|ENST00000234179|PRKD3	REV__ENSG00000115825|ENST00000234179|PRKD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7662658691406	2	459.766374	917.518196	-0.91292	-0.00041973	0.58069	0.00026698	-0.33223	-0.00015275	459.76671909587566	26.239	0.20813	26.239	26.148	26.356	0					12	6	3	0	0	0	0.41701	1	8219	8219		68.787	15.435	1	240150	+		18540	14126	11701	11754	18818	18818					0.056137675519039476
ITVSPYLKA	9	Unmodified	_ITVSPYLKA_					0	0	0			REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.29339599609375	2	496.294768	990.574983	-1.1974	-0.00059425	-2.426	-0.001204	-3.6233	-0.0017982	496.2934925626594	15.205	0.067826	15.205	15.178	15.246	0					4	2	2	0	0	0	0.14603	1	3422	3422		68.787	2.3575	1	69208	+		18541	22210	11702	11755	18819	18819					0.0793181510841805
ITVTCRASSF	10	Unmodified	_ITVTCRASSF_					0	0	0		ENSG00000204520|ENST00000449934|MICA;nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB	ENSG00000204520|ENST00000449934|MICA	ENSG00000204520|ENST00000449934|MICA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.7767944335938	2	542.776416	1083.53828	0.27586	0.00014973	0.082933	4.5014E-05	0.3588	0.00019475	542.7765912527904	19.031	0.12782	19.031	18.965	19.093	0					9	4	3	0	0	0	0.63224	1	5086	5086		30.318	1.1477	1	147390			18542	7706	11703	11756	18820	18820					-0.00014804779789301392
ITVTSKTNK	9	Unmodified	_ITVTSKTNK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2926330566406	2	496.292756	990.57096	-0.060646	-3.0098E-05	-0.021054	-1.0449E-05	-0.0817	-4.0547E-05	496.29262815821403	15.202	0.06648	15.202	15.138	15.204	0					6	2	3	0	0	0	0.18416	1	3255	3255		63.534	7.1001	1	124890			18543	1085	11704	11757	18821	18821					0.07529725614710969
ITVVFALDL	9	Unmodified	_ITVVFALDL_					0	0	0			REV__ENST00000263238.6_1_2:114713257-114715078:+|nuORF	REV__ENST00000263238.6_1_2:114713257-114715078:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.79498291015625	2	495.797143	989.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.56	1	21.56	21.06	22.06	0								0	0	0	0.13522	1	6272	6272		63.306	7.8021	1		+		18544	18042	11705	11758	18822	18822					0.0845269925117691
ITWARTWW	8	Unmodified	_ITWARTWW_					0	0	0		chr7:150859048-150860943|112|16.58|1.0|4.06|+|1|AOC1,AOC1|1	chr7:150859048-150860943|112|16.58|1.0|4.06|+|1|AOC1,AOC1|1	chr7:150859048-150860943|112|16.58|1.0|4.06|+|1|AOC1,AOC1|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.2900390625	2	560.290351	1118.56615	1.2818	0.00071816	-1.2862	-0.00072066	-0.0044694	-2.5041E-06	560.2897671390451	30.81	0.14164	30.81	30.738	30.879	0					8	5	2	0	0	0	0.7126	1	9852	9852		31.955	1.6371	1	49432			18545	534	11706	11759	18823	18823					0.011608862625962502
ITYKPLDLQ	9	Unmodified	_ITYKPLDLQ_					0	0	0			REV__ENSG00000182568|ENST00000338745|SATB1	REV__ENSG00000182568|ENST00000338745|SATB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.814208984375	2	545.810782	1089.60701	0.88395	0.00048247	3.7757	0.0020608	4.6597	0.0025433	545.8128306406603	37.449	0.27414	37.449	37.335	37.61	0					18	8	3	0	0	0	0.017421	1	14632	14632		122.18	5.2724	1	211610	+		18546	16889	11707	11760	18824	18824					0.0657918279155183
ITYKPLDLQ	9	Unmodified	_ITYKPLDLQ_					0	0	0			REV__ENSG00000182568|ENST00000338745|SATB1	REV__ENSG00000182568|ENST00000338745|SATB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8123779296875	2	545.810782	1089.60701	1.9341	0.0010557	0.99326	0.00054213	2.9274	0.0015978	545.8116939898534	37.357	0.45571	37.357	37.252	37.708	0					26	9	4	0	0	0	0.014413	2	14586	14586;14685		127.46	5.2857	1	2377500	+		18547	16889	11707	11760	18825;18826	18825					0.0657918279155183
ITYLKDKDI	9	Unmodified	_ITYLKDKDI_					0	0	0		tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.21307373046875	3	370.213135	1107.61758	0.44917	0.00016629	-0.62987	-0.00023319	-0.1807	-6.6896E-05	370.2128688974562	31.25	0.34352	31.25	31.108	31.452	0					24	8	4	0	0	0	0.50858	1	11343	11343		38.754	16.174	1	2103600			18548	22703	11708	11761	18827	18827					0.06807165446002728
IVAAKGAG	8	Unmodified	_IVAAKGAG_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.714599609375	2	343.713414	685.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.333	1	20.333	19.833	20.833	0								0	0	0	1.7419	1	6573	6573		5.0869	0	1				18549	3640	11709	11762	18828	18828					0.05698476497093452
IVAGNESHEML	11	Unmodified	_IVAGNESHEML_					0	0	0			REV__CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant	REV__CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.792724609375	2	600.289888	1198.56522	0.99111	0.00059495	0.7438	0.0004465	1.7349	0.0010414	600.2902671880859	46.075	0.45567	46.075	45.641	46.097	0					43	26	2	0	0	0	0.63398	1	17646	17646		33.922	4.7721	1	62996	+		18550	12320	11710	11763	18829	18829					-0.026117409592416152
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2891845703125	2	451.289485	900.564418	-0.0011319	-5.1081E-07	-0.1347	-6.0791E-05	-0.13584	-6.1302E-05	451.28940772083	30.262	0.23655	30.262	30.193	30.429	0					17	8	3	0	0	0	0.037924	1	9619	9619		101.25	26.209	1	577570			18551	7371	11711	11764	18830	18830					0.11015832453983876
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.28924560546875	2	451.289485	900.564418	-1.1906	-0.00053729	0.87697	0.00039577	-0.31359	-0.00014152	451.2898534583357	30.312	0.29511	30.312	30.214	30.509	0					21	9	4	0	0	0	0.063823	1	9923	9923		90.37	5.4543	1	730680			18552	7371	11711	11764	18831	18831					0.11015832453983876
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.28924560546875	2	451.289485	900.564418	-0.10807	-4.877E-05	-0.61272	-0.00027651	-0.72079	-0.00032528	451.2891987793753	30.521	0.3424	30.521	30.416	30.758	0					16	7	3	0	0	0	0.048471	1	11405	11405		95.815	23.938	1	2714400			18553	7371	11711	11764	18832	18832					0.11015832453983876
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.28948974609375	2	451.289485	900.564418	0.4337	0.00019572	-0.83224	-0.00037558	-0.39854	-0.00017986	451.2890880234721	30.31	0.30339	30.31	30.229	30.533	0					12	7	3	0	0	0	0.19605	1	10296	10296		62.107	1.9892	1	571690			18554	7371	11711	11764	18833	18833					0.11015832453983876
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.28912353515625	2	451.289485	900.564418	-0.12663	-5.7147E-05	-0.5475	-0.00024708	-0.67414	-0.00030423	451.28923296071395	30.324	0.33709	30.324	30.218	30.555	0					17	8	3	0	0	0	0.21419	1	10306	10306		59.931	11.971	1	616860			18555	7371	11711	11764	18834	18834					0.11015832453983876
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2895202636719	2	451.289485	900.564418	-0.40633	-0.00018337	-0.0021651	-9.7708E-07	-0.40849	-0.00018435	451.28944515986035	30.537	0.40469	30.537	30.393	30.797	0					20	8	3	0	0	0	0.02953	1	11285	11285		109.48	29.766	1	2257500			18556	7371	11711	11764	18835	18835					0.11015832453983876
IVAGTIVVK	9	Unmodified	_IVAGTIVVK_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.300048828125	2	450.299853	898.585153	0.17344	7.8101E-05	0.012134	5.464E-06	0.18558	8.3565E-05	450.29969636222154	30.467	0.13622	30.467	30.378	30.514	0					5	3	2	0	0	0	0.063823	1	10997	10997		90.37	33.649	1	47936			18557	4164	11712	11765	18836	18836					0.1318042283367049
IVAGTIVVK	9	Unmodified	_IVAGTIVVK_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.300048828125	2	450.299853	898.585153	-0.10058	-4.5292E-05	0.38437	0.00017308	0.28379	0.00012779	450.29991691179924	30.423	0.21183	30.423	30.317	30.529	0					6	4	2	0	0	0	0.098791	1	11379	11379		79.713	15.505	1	210830			18558	4164	11712	11765	18837	18837					0.1318042283367049
IVAGTIVVK	9	Unmodified	_IVAGTIVVK_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.3002014160156	2	450.299853	898.585153	-0.40118	-0.00018065	0.7394	0.00033295	0.33822	0.0001523	450.30020634803526	30.4	0.16422	30.4	30.294	30.458	0					6	3	2	0	0	0	0.24095	1	11260	11260		56.721	7.2795	1	253350			18559	4164	11712	11765	18838	18838					0.1318042283367049
IVAGTLTNK	9	Unmodified	_IVAGTLTNK_					0	0	0		ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7770080566406	2	458.776742	915.538931	0.066368	3.0448E-05	-0.58778	-0.00026966	-0.52141	-0.00023921	458.7764902164744	23.086	0.22811	23.086	23.004	23.232	0					21	7	4	0	0	0	0.0080613	1	6612	6612		145.16	26.413	1	2024200			18560	740	11713	11766	18839	18839					0.07778357931567825
IVAGTLTNK	9	Unmodified	_IVAGTLTNK_					0	0	0		ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.77642822265625	2	458.776742	915.538931	-0.41669	-0.00019117	-0.33263	-0.0001526	-0.74932	-0.00034377	458.7765807150711	23.079	0.25902	23.079	22.962	23.221	0					22	8	4	0	0	0	0.016683	1	6608	6608		127.46	45.157	1	1598200			18561	740	11713	11766	18840	18840					0.07778357931567825
IVAGTLTNK	9	Unmodified	_IVAGTLTNK_					0	0	0		ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.77642822265625	2	458.776742	915.538931	-0.65563	-0.00030079	-0.0037334	-1.7128E-06	-0.65937	-0.0003025	458.7767387051896	23.394	0.44237	23.394	23.294	23.736	0					27	10	4	0	0	0	0.00324	1	7747	7747		167.23	51.735	1	6391600			18562	740	11713	11766	18841	18841					0.07778357931567825
IVAGTLTNK	9	Unmodified	_IVAGTLTNK_					0	0	0		ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.776611328125	2	458.776742	915.538931	-0.95786	-0.00043945	0.35421	0.0001625	-0.60366	-0.00027694	458.77690615556537	23.122	0.31774	23.122	23.029	23.346	0					31	10	5	0	0	0	0.01873	1	6884	6884		124.08	28.265	1	3015800			18563	740	11713	11766	18842	18842					0.07778357931567825
IVAGTLTNK	9	Unmodified	_IVAGTLTNK_					0	0	0		ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	ENST00000436115.6_1_19:1390815-1393403:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.77642822265625	2	458.776742	915.538931	0.07708	3.5363E-05	-0.50559	-0.00023196	-0.42851	-0.00019659	458.7764906597358	23.164	0.367	23.164	23.079	23.446	0					22	8	4	0	0	0	0.00024018	1	7016	7016		190.52	78.87	1	2279200			18564	740	11713	11766	18843	18843					0.07778357931567825
IVAGTNLGLL	10	Unmodified	_IVAGTNLGLL_					0	0	0			REV__SCPEP1|p.A25T|1|0.38|ENSG00000121064|chr17:56978232-56978232|G/A|missense_variant	REV__SCPEP1|p.A25T|1|0.38|ENSG00000121064|chr17:56978232-56978232|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.8003845214844	2	485.800217	969.585882	0.020625	1.002E-05	-0.42075	-0.0002044	-0.40012	-0.00019438	485.80008671216956	35.83	0.2732	35.83	35.645	35.918	0					19	13	2	0	0	0	0.32758	1	11731	11731		64.207	9.431	1	92728	+		18565	21497	11714	11767	18844	18844					0.09987217482705546
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.32049560546875	2	479.320786	956.627018	0.024667	1.1824E-05	0.44495	0.00021327	0.46962	0.0002251	479.32105999475965	40.505	0.25437	40.505	40.422	40.676	0					24	15	2	0	0	0	0.21263	1	13076	13076		60.118	12.461	1	87717			18566	7110	11715	11768	18845	18845					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.3208923339844	2	479.320786	956.627018	0.46821	0.00022442	-0.94071	-0.0004509	-0.4725	-0.00022648	479.320338753567	40.803	0.35817	40.803	40.686	41.045	0					32	12	4	0	0	0	0.056004	1	15533	15533		93.143	26.714	1	575390			18567	7110	11715	11768	18846	18846					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.32037353515625	2	479.320786	956.627018	-0.23269	-0.00011154	0.5401	0.00025888	0.30741	0.00014735	479.3205655781247	40.773	0.065128	40.773	40.735	40.8	0					6	3	2	0	0	0	0.16002	1	15540	15540		66.429	15.094	1	44736			18568	7110	11715	11768	18847	18847					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.3207092285156	2	479.320786	956.627018	-1.4216	-0.00068141	1.3089	0.00062738	-0.11271	-5.4025E-05	479.32148702600074	40.571	0.31763	40.571	40.464	40.782	0					29	18	2	0	0	0	0.16806	1	13559	13559		65.465	24.687	1	225520			18569	7110	11715	11768	18848	18848					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.3209228515625	2	479.320786	956.627018	-0.31411	-0.00015056	0.36753	0.00017617	0.05342	2.5605E-05	479.32123091325894	40.531	0.23707	40.531	40.454	40.691	0					24	13	2	0	0	0	0.078509	1	14381	14381		85.161	30.385	1	87775			18570	7110	11715	11768	18849	18849					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.3205261230469	2	479.320786	956.627018	-0.6592	-0.00031597	0.13224	6.3385E-05	-0.52697	-0.00025259	479.3209325601742	40.679	0.31934	40.679	40.59	40.909	0					13	5	3	0	0	0	0.15163	1	16179	16179		67.494	10.773	1	767860			18571	7110	11715	11768	18850	18850					0.14696978522181325
IVAPAQRI	8	Unmodified	_IVAPAQRI_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.27374267578125	2	434.27417	866.533787	-0.44202	-0.00019196	0.11204	4.8655E-05	-0.32998	-0.0001433	434.27391615661645	30.097	0.52676	30.097	29.839	30.366	0					23	13	2	0	0	0	0.6282	1	10820	10820		44.531	3.9584	1	145140	+		18572	17746	11716	11769	18851	18851					0.09518098859598467
IVCWAPFTTY	10	Unmodified	_IVCWAPFTTY_					0	0	0		ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.79150390625	2	600.791535	1199.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.169	1	50.169	49.669	50.669	0								0	0	0	0.40446	1	19814	19814		29.15	1.0681	1				18573	2722	11717	11770	18852	18852					-0.023284461146204194
IVDDPKALK	9	Unmodified	_IVDDPKALK_					0	0	0		ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000198648|ENST00000355999|STK39	ENST00000487143.5_1_2:168812008-168969496:-|nuORF	ENST00000487143.5_1_2:168812008-168969496:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.53411865234375	3	333.534209	997.580796	0.5394	0.00017991	-0.56668	-0.00018901	-0.027288	-9.1016E-06	333.53403102361415	22.294	0.26405	22.294	22.136	22.4	0					14	5	3	0	0	0	0.50461	1	7563	7563		31.53	8.9502	1	235640			18574	7582	11718	11771	18853	18853					0.08190913620092033
IVDPHLAGL	9	Unmodified	_IVDPHLAGL_					0	0	0			REV__FARSB|p.V563A|1|0.34|ENSG00000116120|chr2:222571953-222571953|A/G|missense_variant	REV__FARSB|p.V563A|1|0.34|ENSG00000116120|chr2:222571953-222571953|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.77069091796875	2	467.77146	933.528367	-0.72727	-0.0003402	0.37668	0.0001762	-0.35059	-0.000164	467.7715851673111	33.248	0.32876	33.248	33.032	33.361	0					16	10	2	0	0	0	0.50461	1	11600	11600		31.955	6.5047	1	93538	+		18575	20663	11719	11772	18854	18854					0.05894375277148356
IVDQSQQAY	9	Unmodified	_IVDQSQQAY_					0	0	0		ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000392459.3_1_6:127676988-127677414:+|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2561645507812	2	526.256371	1050.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.497	1	26.497	25.997	26.997	0								0	0	0	0.35507	1	8340	8340		24.203	0	1				18576	5741	11720	11773	18855	18855					-0.025040281787141794
IVDRGKHK	8	Unmodified	_IVDRGKHK_					0	0	0			REV__nc|ENSG00000149294|P13591-6|NCAM1	REV__nc|ENSG00000149294|P13591-6|NCAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.78753662109375	2	476.787976	951.561398	0.63519	0.00030285	-0.76506	-0.00036477	-0.12987	-6.1919E-05	476.7876749701601	15.187	0.55727	15.187	14.927	15.484	0					15	11	2	0	0	0	0.5676	1	4111	4111		53.351	2.016	1	1262500	+		18577	15413	11721	11774	18856	18856					0.08368002119857465
IVETERIS	8	Unmodified	_IVETERIS_					0	0	0			REV__nc|ENSG00000124145|P31431-2|SDC4	REV__nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7636413574219	2	473.763832	945.513111	0.26638	0.0001262	-0.61094	-0.00028944	-0.34456	-0.00016324	473.7636121481035	30.667	0.40214	30.667	30.487	30.889	0					18	9	3	0	0	0	0.2678	1	11068	11068		93.195	5.499	1	1056900	+		18578	14378	11722	11775	18857	18857					0.03817463689279066
IVFADPVKK	9	Unmodified	_IVFADPVKK_					0	0	0		ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.54278564453125	3	339.542816	1015.60662	-0.021649	-7.3506E-06	-0.089583	-3.0417E-05	-0.11123	-3.7768E-05	339.5427594565384	29.068	0.36514	29.068	28.909	29.274	0					14	7	3	0	0	0	0.57706	1	10592	10592		39.253	2.8061	1	386850			18579	6777	11723	11776	18858	18858					0.09943807862362064
IVFALRAAL	9	Unmodified	_IVFALRAAL_					0	0	0			REV__ENST00000525494.1_1_11:70016194-70034107:+|nuORF	REV__ENST00000525494.1_1_11:70016194-70034107:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.19390869140625	3	325.211289	972.612037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.116	1	22.116	21.616	22.616	0								0	0	0	0.29774	1	7438	7438		35.618	5.1146	1		+		18580	14628	11724	11777	18859	18859					0.1246353144481418
IVFEGNKMGIA	11	Unmodified	_IVFEGNKMGIA_					0	0	0			REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant	REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.8156127929688	2	589.815541	1177.61653	-0.45709	-0.0002696	0.90225	0.00053216	0.44516	0.00026256	589.8161308007868	31.684	0.46139	31.684	31.454	31.915	0					40	18	3	0	0	0	0.68382	1	10597	10597		29.17	1.2878	1	122210	+		18581	12797	11725	11778	18860	18860					0.03482627805465199
IVFLAPAGW	9	Unmodified	_IVFLAPAGW_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR	REV__nc|ENSG00000010310|P48546-2|GIPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.281982421875	2	487.278921	972.543289	3.5027	0.0017068	2.1178	0.001032	5.6205	0.0027387	487.280046680377	30.373	0.14656	30.373	30.316	30.463	0					7	4	2	0	0	0	0.53083	1	9974	9974		21.702	6.0661	1	54903	+		18582	12894	11726	11779	18861	18861					0.05591867145130891
IVFLKKNYK	9	Unmodified	_IVFLKKNYK_					0	0	0		tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	384.9107666015625	3	384.909498	1151.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.315	1	19.315	18.815	19.815	0								0	0	0	0.34845	1	4975	4975		25.574	2.0514	1				18583	22813	11727	11780	18862	18862					0.13688045196158782
IVFVTGNAK	9	Unmodified	_IVFVTGNAK_					0	0	0		ENST00000460550.5_1_20:3190197-3194650:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000460550.5_1_20:3190197-3194650:+|nuORF	ENST00000460550.5_1_20:3190197-3194650:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7795104980469	2	474.779285	947.544017	-0.12044	-5.7182E-05	0.60458	0.00028704	0.48414	0.00022986	474.7796319830164	30.375	0.20288	30.375	30.277	30.479	0					7	4	2	0	0	0	0.047412	1	11357	11357		96.19	46.166	1	235990			18584	3446	11728	11781	18863	18863					0.06814661794192034
IVFVTGNAK	9	Unmodified	_IVFVTGNAK_					0	0	0		ENST00000460550.5_1_20:3190197-3194650:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000460550.5_1_20:3190197-3194650:+|nuORF	ENST00000460550.5_1_20:3190197-3194650:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7791442871094	2	474.779285	947.544017	-0.60349	-0.00028653	0.57986	0.0002753	-0.023639	-1.1223E-05	474.779544529945	30.351	0.21242	30.351	30.245	30.458	0					11	4	3	0	0	0	0.27249	1	11236	11236		52.937	3.4952	1	498370			18585	3446	11728	11781	18864	18864					0.06814661794192034
IVGDPSTAK	9	Unmodified	_IVGDPSTAK_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2450256347656	2	444.245275	886.475997	-0.067058	-2.979E-05	-0.54316	-0.0002413	-0.61022	-0.00027109	444.2450306996413	19.496	0.50947	19.496	19.138	19.647	0					26	11	3	0	0	0	0.42902	1	5824	5824		39.253	3.6345	1	750140			18586	1553	11729	11782	18865	18865					0.028217921435157223
IVGGSSVYK	9	Unmodified	_IVGGSSVYK_					0	0	0		ENSG00000228716|ENST00000439211|DHFR;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000178700|ENST00000314636|DHFR2	ENSG00000228716|ENST00000439211|DHFR	ENSG00000228716|ENST00000439211|DHFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2558898925781	2	455.255643	908.496732	0.26544	0.00012084	-0.0017354	-7.9007E-07	0.2637	0.00012005	455.25564689675645	23.285	0.10686	23.285	23.234	23.34	0					4	2	2	0	0	0	0.25716	1	7697	7697		54.776	8.0099	1	142620			18587	7886	11730	11783	18866	18866					0.038823825231816045
IVGGSSVYK	9	Unmodified	_IVGGSSVYK_					0	0	0		ENSG00000228716|ENST00000439211|DHFR;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000178700|ENST00000314636|DHFR2	ENSG00000228716|ENST00000439211|DHFR	ENSG00000228716|ENST00000439211|DHFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.2552795410156	2	455.255643	908.496732	-0.42549	-0.00019371	0.31714	0.00014438	-0.10835	-4.9329E-05	455.25567340931553	23.192	0.16787	23.192	23.133	23.301	0					7	3	3	0	0	0	0.25716	1	7842	7842		54.776	8.8244	1	233070			18588	7886	11730	11783	18867	18867					0.038823825231816045
IVGKRRKT	8	Unmodified	_IVGKRRKT_					0	0	0		ENST00000425412.1_1_1:231663082-231664218:-|nuORF;ENST00000416221.5_1_1:231658373-231664296:-|nuORF;ENST00000454631.1_1_1:231660190-231664218:-|nuORF	ENST00000425412.1_1_1:231663082-231664218:-|nuORF	ENST00000425412.1_1_1:231663082-231664218:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.3204650878906	2	479.319443	956.624333	2.2855	0.0010955	-0.058949	-2.8255E-05	2.2265	0.0010672	479.319342711403	40.695	0.45025	40.695	40.566	41.016	0					18	8	4	0	0	0	0.61938	1	16163	16163		45.952	5.3793	1	917830			18589	9358	11731	11784	18868	18868					0.14428567907884826
IVGPGSSK	8	Unmodified	_IVGPGSSK_					0	0	0			REV__chr14:35294529-35307994|248|14.54|0.0|20.47|+|0|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|1	REV__chr14:35294529-35307994|248|14.54|0.0|20.47|+|0|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.71771240234375	2	372.716153	743.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.062	1	37.062	36.562	37.562	0								0	0	0	1.7419	1	12146	12146		13.775	1.5685	1		+		18590	12468	11732	11785	18869	18869					0.035781552889034174
IVGPNGVGK	9	Unmodified	_IVGPNGVGK_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1;ABCF1|p.S665R|1|0.46|ENSG00000204574|chr6:30586675-30586675|T/A|missense_variant	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.7502746582031	2	420.750527	839.486502	0.11898	5.0059E-05	-0.55088	-0.00023178	-0.43191	-0.00018172	420.7502516741044	21.934	0.33479	21.934	21.685	22.02	0					10	7	2	0	0	0	0.41354	1	6413	6413		40.573	3.4135	1	91223			18591	7709	11733	11786	18870	18870					0.06033819588617462
IVGPNGVGK	9	Unmodified	_IVGPNGVGK_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1;ABCF1|p.S665R|1|0.46|ENSG00000204574|chr6:30586675-30586675|T/A|missense_variant	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.75030517578125	2	420.750527	839.486502	-0.31844	-0.00013398	-0.026471	-1.1137E-05	-0.34491	-0.00014512	420.75045531136624	22.094	0.56684	22.094	21.687	22.254	0					29	11	4	0	0	0	0.18605	1	7260	7260		63.306	7.8021	1	847010			18592	7709	11733	11786	18871	18871					0.06033819588617462
IVGPRVTLL	9	Unmodified	_IVGPRVTLL_					0	0	0			REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	323.2146911621094	3	323.21481	966.622602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.746	1	33.746	33.246	34.246	0								0	0	0	0.3368	1	12860	12860		27.882	3.3631	1		+		18593	19083	11734	11787	18872	18872					0.13795514099274442
IVGSPDERL	9	Unmodified	_IVGSPDERL_					0	0	0			REV__CNKSR2|p.Y594Ifs*15|1|0.62|ENSG00000149970|chrX:21591137-21591138|-/A|frameshift_variant	REV__CNKSR2|p.Y594Ifs*15|1|0.62|ENSG00000149970|chrX:21591137-21591138|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2702941894531	2	493.269281	984.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.796	1	38.796	38.296	39.296	0								0	0	0	0.3245	1	15235	15235		23.042	0	1		+		18594	12527	11735	11788	18873	18873					0.031128660635772576
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.3302917480469	2	478.331153	954.647754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.034	1	40.034	39.534	40.534	0								0	0	0	0.0023244	1	12964	12964		118.74	17.142	1				18595	7892	11736	11789	18874	18874					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.8335876464844	2	478.331153	954.647754	0.016983	8.1234E-06	0.70871	0.000339	0.72569	0.00034712	478.3313847167965	40.076	0.16602	40.076	39.981	40.147	0					14	9	2	0	0	0	0.0792	1	12962	12962		84.916	8.1414	1	128600			18596	7892	11736	11789	18875	18875					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.3315734863281	2	478.331153	954.647754	0.51522	0.00024645	-0.33794	-0.00016165	0.17728	8.4799E-05	478.33099141508217	40.371	0.26138	40.371	40.295	40.556	0					24	10	3	0	0	0	0.0033339	1	15372	15372		166.68	18.636	1	899250			18597	7892	11736	11789	18876	18876					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.33123779296875	2	478.331153	954.647754	0.43096	0.00020614	-0.63713	-0.00030476	-0.20617	-9.8617E-05	478.33081193776405	40.384	0.28296	40.384	40.288	40.571	0					28	11	3	0	0	0	0.22377	1	15367	15367		58.782	5.4305	1	508910			18598	7892	11736	11789	18877	18877					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.3318176269531	2	478.331153	954.647754	-0.11642	-5.569E-05	-0.34551	-0.00016527	-0.46193	-0.00022096	478.330915089684	40.348	0.40858	40.348	40.226	40.635	0					44	16	4	0	0	0	0.034359	1	15868	15868		104.75	8.5561	1	1035800			18599	7892	11736	11789	18878	18878					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.3311462402344	2	478.331153	954.647754	-0.0053898	-2.5781E-06	0.46797	0.00022385	0.46258	0.00022127	478.3313377115239	40.107	0.22213	40.107	40.046	40.268	0					22	11	2	0	0	0	0.037569	1	14257	14257		101.6	16.685	1	181980			18600	7892	11736	11789	18879	18879					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.33062744140625	2	478.331153	954.647754	-0.65447	-0.00031305	0.35691	0.00017072	-0.29756	-0.00014233	478.3312232938097	40.316	0.45925	40.316	40.147	40.606	0					30	10	4	0	0	0	0.010494	1	15951	15951		139.97	17.794	1	2177200			18601	7892	11736	11789	18880	18880					0.16861568901845203
IVGVNRTN	8	Unmodified	_IVGVNRTN_					0	0	0			REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7495422363281	2	436.751059	871.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.742	1	33.742	33.242	34.242	0								0	0	0	1.7419	1	12505	12505		13.775	0.81615	1		+		18602	22160	11737	11790	18881	18881					0.04668033957523221
IVHDNVTL	8	Unmodified	_IVHDNVTL_					0	0	0			REV__ENST00000216489.7_1_14:78139965-78140151:-|nuORF	REV__ENST00000216489.7_1_14:78139965-78140151:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.75299072265625	2	455.753267	909.491981	0.87844	0.00040035	-1.9739	-0.0008996	-1.0954	-0.00049925	455.7525664331728	29.448	0.40723	29.448	29.341	29.748	0					16	8	4	0	0	0	0.54629	1	10804	10804		55.504	0.72789	1	636680	+		18603	17884	11738	11791	18882	18882					0.03361498380422745
IVIELGTNP	9	Unmodified	_IVIELGTNP_					0	0	0		ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2762451171875	2	478.276575	954.538597	0.86475	0.00041359	-2.1686	-0.0010372	-1.3038	-0.00062359	478.2755650321635	32.133	0.32109	32.133	32	32.321	0					18	6	4	0	0	0	0.39215	1	12111	12111		42.396	1.618	1	844450			18604	1052	11739	11792	18883	18883					0.059509382117198584
IVIETGPLK	9	Unmodified	_IVIETGPLK_					0	0	0		ENSG00000151657|ENST00000379562|KIN	ENSG00000151657|ENST00000379562|KIN	ENSG00000151657|ENST00000379562|KIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.3028564453125	2	485.302593	968.590633	0.34967	0.0001697	-0.64931	-0.00031511	-0.29964	-0.00014542	485.3022645755637	34.71	0.32633	34.71	34.545	34.871	0					19	8	3	0	0	0	0.010494	1	12927	12927		139.97	63.196	1	412590			18605	4977	11740	11793	18884	18884					0.10508101625464406
IVIETGPLK	9	Unmodified	_IVIETGPLK_					0	0	0		ENSG00000151657|ENST00000379562|KIN	ENSG00000151657|ENST00000379562|KIN	ENSG00000151657|ENST00000379562|KIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.3021545410156	2	485.302593	968.590633	-0.090467	-4.3904E-05	-1.7744	-0.00086113	-1.8649	-0.00090504	485.30241641029176	34.722	0.37687	34.722	34.504	34.881	0					32	10	4	0	0	0	0.10915	1	13357	13357		77.318	20.597	1	974130			18606	4977	11740	11793	18885	18885					0.10508101625464406
IVIETGPLK	9	Unmodified	_IVIETGPLK_					0	0	0		ENSG00000151657|ENST00000379562|KIN	ENSG00000151657|ENST00000379562|KIN	ENSG00000151657|ENST00000379562|KIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.30267333984375	2	485.302593	968.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.576	1	34.576	34.076	35.076	0								0	0	0	0.080575	1	13266	13266		77.318	25.982	1				18607	4977	11740	11793	18886	18886					0.10508101625464406
IVIHLLDGL	9	Unmodified	_IVIHLLDGL_					0	0	0			REV__EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant	REV__EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.81005859375	2	496.810585	991.606617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.982	1	26.982	26.482	27.482	0								0	0	0	0.29985	1	8546	8546		35.201	1.6851	1		+		18608	12767	11741	11794	18887	18887					0.1104780786236006
IVILYFKE	8	Unmodified	_IVILYFKE_					0	0	0			REV__ENST00000512281.1_1_5:118470015-118483170:+|nuORF	REV__ENST00000512281.1_1_5:118470015-118483170:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.8077392578125	2	512.807511	1023.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.386	1	11.386	10.886	11.886	0								0	0	0	1.7419	1	2157	2157		4.6817	0.36548	1		+		18609	12721	11742	11795	18888	18888					0.08961289630849478
IVIVNFLLK	9	Unmodified	_IVIVNFLLK_					0	0	0			REV__ENST00000451029.5_1_7:89905415-89916830:+|nuORF	REV__ENST00000451029.5_1_7:89905415-89916830:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8516845703125	2	529.852253	1057.68995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.834	1	39.834	39.334	40.334	0								0	0	0	0.27939	1	15680	15680		31.955	6.5047	1		+		18610	12444	11743	11796	18889	18889					0.16341544310216705
IVKEQLAAV	9	Unmodified	_IVKEQLAAV_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.79901123046875	2	485.800217	969.585882	-0.025003	-1.2147E-05	-0.22627	-0.00010992	-0.25128	-0.00012207	485.8002197805762	32.76	1.6217	32.76	32.398	34.02	0					190	65	6	0	0	0	0.0792	1	10910	10910		84.916	13.038	1	29853000			18611	854	11744	11797	18890	18890					0.09987217482694177
IVKSTEANVL	10	Unmodified	_IVKSTEANVL_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3134155273438	2	537.313689	1072.61282	1.031	0.000554	0.9937	0.00053393	2.0248	0.0010879	537.3140997284967	23.943	0.24938	23.943	23.844	24.093	0					15	6	3	0	0	0	0.27406	1	7375	7375		41.427	0	1	340800			18612	11866	11745	11798	18891	18891					0.07942281303235177
IVKTTTEFK	9	Unmodified	_IVKTTTEFK_					0	0	0			REV__nc|ENSG00000112339|Q9Y450-4|HBS1L	REV__nc|ENSG00000112339|Q9Y450-4|HBS1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.8125	2	533.810782	1065.60701	0.149	7.9536E-05	2.3453	0.0012519	2.4943	0.0013315	533.8125019099659	30.873	0.22857	30.873	30.771	30.999	0					10	5	3	0	0	0	0.27249	1	11184	11184		52.937	2.9122	1	439630	+		18613	14003	11746	11799	18892	18892					0.07683182791561194
IVKVSITKV	9	Unmodified	_IVKVSITKV_					0	0	0			REV__nc|ENSG00000183023|P32418-5|SLC8A1	REV__nc|ENSG00000183023|P32418-5|SLC8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.5584716796875	3	329.558466	985.653567	-0.66752	-0.00021999	0.71142	0.00023446	0.043905	1.4469E-05	329.5587140390744	27.679	0.21563	27.679	27.585	27.8	0					11	7	2	0	0	0	0.61124	1	8854	8854		22.58	22.58	1	247030	+		18614	16906	11747	11800	18893	18893					0.16016667413498453
IVLAAGRNR	9	Unmodified	_IVLAAGRNR_					0	0	0		ENST00000546525.5_1_6:169959876-170034596:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	ENST00000546525.5_1_6:169959876-170034596:-|nuORF	ENST00000546525.5_1_6:169959876-170034596:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.8039855957031	2	485.30125	968.587947	3.4916	0.0016945	-1.3916	-0.00067535	2.1	0.0010191	485.3009007092248	34.502	0.26232	34.502	34.365	34.627	0					20	11	2	0	0	0	0.30268	1	11620	11620		50.025	3.2581	1	164460			18615	7019	11748	11801	18894	18894					0.10239691011179275
IVLIDAHKDT	10	Unmodified	_IVLIDAHKDT_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8209838867188	2	562.819138	1123.62372	3.47	0.001953	0.76468	0.00043037	4.2347	0.0023834	563.3211651414779	43.852	0.21884	43.852	43.791	44.01	0					13	7	2	0	0	0	0.19797	1	17563	17563		79.713	20.931	1	147780			18616	2254	11749	11802	18895	18895					0.06685683677528687
IVLMAEALE	9	Unmodified	_IVLMAEALE_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7739562988281	2	494.772811	987.531069	-0.06591	-3.261E-05	3.1391	0.0015531	3.0731	0.0015205	494.7745033410043	30.801	0.10836	30.801	30.719	30.827	0					6	4	2	0	0	0	0.30268	1	9853	9853		50.025	7.5501	1	42605			18617	4473	11750	11803	18896	18896					0.03680462619774971
IVLNTKIL	8	Unmodified	_IVLNTKIL_					0	0	0		ENST00000368346.7_1_1:155305486-155305633:-|nuORF	ENST00000368346.7_1_1:155305486-155305633:-|nuORF	ENST00000368346.7_1_1:155305486-155305633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.30731201171875	2	457.307678	912.600803	-0.14922	-6.8238E-05	-0.41653	-0.00019048	-0.56575	-0.00025872	457.3074495204506	31.676	0.20808	31.676	31.572	31.78	0					7	4	2	0	0	0	0.60719	1	11957	11957		47.916	3.7988	1	192220			18618	8922	11751	11804	18897	18897					0.14100709350691432
IVLPGRFLK	9	Unmodified	_IVLPGRFLK_					0	0	0			REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.23040771484375	3	348.230572	1041.66989	1.4578	0.00050765	-1.2522	-0.00043605	0.20561	7.1599E-05	348.23007917553565	37.95	0.29969	37.95	37.846	38.145	0					28	10	4	0	0	0	0.54267	1	14856	14856		27.882	0	1	453980	+		18619	17397	11752	11805	18898	18898					0.15071793370248088
IVLSAVITK	9	Unmodified	_IVLSAVITK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.3133850097656	2	472.312961	942.611368	-0.12316	-5.8169E-05	-0.45778	-0.00021622	-0.58094	-0.00027439	472.3129992008912	37.442	0.14525	37.442	37.365	37.51	0					8	4	2	0	0	0	0.16806	1	14653	14653		65.465	12.529	1	50868			18620	6453	11753	11806	18899	18899					0.1377669200512628
IVLSAVITK	9	Unmodified	_IVLSAVITK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.31280517578125	2	472.312961	942.611368	-0.56641	-0.00026752	-0.17547	-8.2879E-05	-0.74188	-0.0003504	472.3129354752801	37.374	0.216	37.374	37.268	37.484	0					7	4	2	0	0	0	0.35021	1	14618	14618		45.972	8.1607	1	202520			18621	6453	11753	11806	18900	18900					0.1377669200512628
IVLTFKKPL	9	Unmodified	_IVLTFKKPL_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.57073974609375	3	353.570594	1057.68995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.854	1	39.854	39.354	40.354	0								0	0	0	0.2591	1	15690	15690		42.396	4.5846	1				18622	6465	11754	11807	18901	18901					0.16341544310216705
IVLTILSLSG	10	Unmodified	_IVLTILSLSG_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2;SLC9C2|p.K843Nfs*2|1|0.57|ENSG00000162753|chr1:173524080-173524080|T/-|frameshift_variant;SLC9C2|p.F247Lfs*5|1|0.1|ENSG00000162753|chr1:173581908-173581908|A/-|frameshift_variant	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.32354736328125	2	508.323525	1014.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.265	1	41.265	40.765	41.765	0								0	0	0	0.37816	1	15689	15689		37.159	1.5408	1				18623	5496	11755	11808	18902	18902					0.1257665731400266
IVLVATAKK	9	Unmodified	_IVLVATAKK_					0	0	0			REV__EIF2A|p.Y349Hfs*7|1|0.06|ENSG00000144895|chr3:150572190-150572191|-/CATA|frameshift_variant	REV__EIF2A|p.Y349Hfs*7|1|0.06|ENSG00000144895|chr3:150572190-150572191|-/CATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.8204650878906	2	471.820953	941.627353	-0.56556	-0.00026684	-0.64842	-0.00030594	-1.214	-0.00057278	471.8207324986626	22.119	0.13721	22.119	22.033	22.17	0					6	3	2	0	0	0	0.35045	1	6545	6545		45.952	3.5558	1	256670	+		18624	12779	11756	11809	18903	18903					0.15420398242042666
IVLVENFYK	9	Unmodified	_IVLVENFYK_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7742919921875	2	562.82115	1123.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.899	1	43.899	43.399	44.399	0								0	0	0	0.1219	1	17139	17139		66.429	20.477	1				18625	7262	11757	11810	18904	18904					0.07087773171224399
IVLVENFYK	9	Unmodified	_IVLVENFYK_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.822021484375	2	562.82115	1123.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.924	1	43.924	43.424	44.424	0								0	0	0	0.21054	1	17148	17148		49.442	3.4693	1				18626	7262	11757	11810	18905	18905					0.07087773171224399
IVMETGNTK	9	Unmodified	_IVMETGNTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7574462890625	2	496.757692	991.500831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.211	1	21.211	20.711	21.711	0								0	0	0	0.10826	1	5807	5807		69.628	16.276	1				18627	6308	11758	11811	18906	18906					0.004741039545933745
IVMETGNTK	9	Unmodified	_IVMETGNTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7575378417969	2	496.757692	991.500831	0.5497	0.00027307	-1.0911	-0.00054202	-0.54142	-0.00026895	496.75715336916	21.541	0.19627	21.541	21.444	21.641	0					11	4	4	0	0	0	0.0047071	1	6849	6849		159.28	63.085	1	464230			18628	6308	11758	11811	18907	18907					0.004741039545933745
IVMETGNTK	9	Unmodified	_IVMETGNTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7575988769531	2	496.757692	991.500831	-0.031454	-1.5625E-05	-1.0686	-0.00053086	-1.1001	-0.00054648	496.75734400350353	21.432	0.3179	21.432	21.324	21.642	0					16	6	3	0	0	0	0.021015	1	7097	7097		120.31	49.01	1	1623500			18629	6308	11758	11811	18908	18908					0.004741039545933745
IVMETGNTK	9	Unmodified	_IVMETGNTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.75738525390625	2	496.757692	991.500831	-0.062801	-3.1197E-05	-2.2977	-0.0011414	-2.3605	-0.0011726	496.75654242762926	21.457	0.38326	21.457	21.215	21.598	0					17	8	3	0	0	0	0.16806	1	6145	6145		65.465	2.1591	1	359770			18630	6308	11758	11811	18909	18909					0.004741039545933745
IVMETGNTK	9	Unmodified	_IVMETGNTK_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.757568359375	2	496.757692	991.500831	-0.69625	-0.00034587	-2.3561	-0.0011704	-3.0523	-0.0015163	496.7566827487903	21.578	0.56864	21.578	21.238	21.807	0					32	11	5	0	0	0	0.014413	1	6971	6971		131.62	41.246	1	2686100			18631	6308	11758	11811	18910	18910					0.004741039545933745
IVMLTNLK	8	Unmodified	_IVMLTNLK_					0	0	0		nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2846984863281	2	466.285889	930.557224	0.66459	0.00030989	-2.4663	-0.00115	-1.8017	-0.00084013	466.28463250003614	41.854	0.1769	41.854	41.783	41.96	0					10	8	2	0	0	0	0.27512	1	16455	16455		90.777	8.4716	1	71265			18632	3777	11759	11812	18911	18911					0.08916776581907015
IVMNLPNV	8	Unmodified	_IVMNLPNV_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant;ENST00000553437.1_1_14:91808648-91875041:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.25433349609375	2	450.254588	898.494624	-0.40233	-0.00018115	-2.7624	-0.0012438	-3.1647	-0.0014249	450.25444615745045	26.334	0.8008	26.334	25.718	26.519	0					28	14	3	0	0	0	0.6282	1	9268	9268		44.531	0.41427	1	242480			18633	1076	11760	11813	18912	18912					0.04131630513722939
IVMPTTKEK	9	Unmodified	_IVMPTTKEK_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7992553710938	2	523.79936	1045.58417	0.031586	1.6545E-05	0.72071	0.00037751	0.7523	0.00039405	523.8000465135551	21.947	0.36214	21.947	21.692	22.054	0					11	7	2	0	0	0	0.30841	1	7366	7366		49.536	1.8787	1	204830			18634	1412	11761	11814	18913	18913					0.06319840402420596
IVNASTTNK	9	Unmodified	_IVNASTTNK_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.26141357421875	2	474.261456	946.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.542	1	15.542	15.042	16.042	0								0	0	0	0.19847	1	3399	3399		51.193	1.7511	1				18635	1599	11762	11815	18914	18914					0.03296579546508838
IVNASTTNK	9	Unmodified	_IVNASTTNK_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2611389160156	2	474.261456	946.50836	0.28433	0.00013485	-0.96524	-0.00045777	-0.68091	-0.00032293	474.2610485653788	15.816	0.16926	15.816	15.739	15.909	0					11	4	3	0	0	0	0.02429	1	4173	4173		114.89	32.144	1	1011000			18636	1599	11762	11815	18915	18915					0.03296579546508838
IVNASTTNK	9	Unmodified	_IVNASTTNK_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.26116943359375	2	474.261456	946.50836	0.60823	0.00028846	-1.1897	-0.00056422	-0.58145	-0.00027576	474.2609375967082	15.777	0.16479	15.777	15.669	15.834	0					7	3	3	0	0	0	0.040209	1	4394	4394		99.013	36.906	1	2018000			18637	1599	11762	11815	18916	18916					0.03296579546508838
IVNASTTNK	9	Unmodified	_IVNASTTNK_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.26202392578125	2	474.261456	946.50836	-0.46403	-0.00022007	0.72448	0.00034359	0.26045	0.00012352	474.26183237225945	15.573	0.13214	15.573	15.471	15.603	0					7	4	2	0	0	0	0.10506	1	3519	3519		78.264	28.728	1	92938			18638	1599	11762	11815	18917	18917					0.03296579546508838
IVNASTTNK	9	Unmodified	_IVNASTTNK_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2610168457031	2	474.261456	946.50836	-2.5863	-0.0012266	2.1273	0.0010089	-0.45893	-0.00021765	474.26238764017353	15.567	0.10029	15.567	15.496	15.596	0					5	3	2	0	0	0	0.11411	1	3510	3510		76.17	24.834	1	128640			18639	1599	11762	11815	18918	18918					0.03296579546508838
IVNASTTNK	9	Unmodified	_IVNASTTNK_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.26129150390625	2	474.261456	946.50836	0.69897	0.00033149	-1.5212	-0.00072147	-0.82228	-0.00038997	474.2607775939893	15.789	0.31717	15.789	15.63	15.947	0					14	6	5	0	0	0	0.017421	1	4227	4227		126.24	54.947	1	1127900			18640	1599	11762	11815	18919	18919					0.03296579546508838
IVNASTTNK	9	Unmodified	_IVNASTTNK_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.26116943359375	2	474.261456	946.50836	2.3603	0.0011194	-3.2576	-0.001545	-0.89738	-0.00042559	474.2600808298226	15.772	0.26591	15.772	15.664	15.93	0					11	5	4	0	0	0	0.15558	1	4243	4243		66.962	3.6557	1	1146100			18641	1599	11762	11815	18920	18920					0.03296579546508838
IVNATEGYMV	10	Unmodified	_IVNATEGYMV_					0	0	0			REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1	REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7685546875	2	548.7708	1095.52705	0.50729	0.00027838	-2.7856	-0.0015286	-2.2783	-0.0012503	548.76903774064	30.958	0.21147	30.958	30.831	31.043	0					8	4	2	0	0	0	0.51121	1	11526	11526		44.117	4.0586	1	50175	+		18642	21687	11763	11816	18921	18921					-0.01689626873940142
IVNCCHVLF	9	Carbamidomethyl (C)	_IVNC(Carbamidomethyl (C))CHVLF_	IVNC(0.978)C(0.022)HVLF		IVNC(17)C(-17)HVLF		0	1	0			REV__nc|ENSG00000124568|Q14916-2|SLC17A1	REV__nc|ENSG00000124568|Q14916-2|SLC17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7752685546875	2	552.77008	1103.52561	3.6567	0.0020213	4.2196	0.0023325	7.8763	0.0043538	552.7715430412036	43.284	0.45364	43.284	43.171	43.625	0					28	16	3	0	0	0	0.30268	1	17312	17312		50.025	7.1603	2	133200	+		18643	14404	11764	11817	18922	18922	537				-0.022015394436948554
IVNDFAYMK	9	Unmodified	_IVNDFAYMK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.2783813476562	2	550.775885	1099.53722	1.5267	0.00084087	0.75237	0.00041439	2.2791	0.0012553	550.7761992359054	37.108	0.19133	37.108	37.032	37.223	0					22	10	3	0	0	0	0.12834	1	12151	12151		72.879	33.626	1	256070			18644	6229	11765	11818	18923	18923					-0.008570191487024204
IVNDFAYMK	9	Unmodified	_IVNDFAYMK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.7758178710938	2	550.775885	1099.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.11	1	37.11	36.61	37.61	0								0	0	0	0.19847	1	12161	12161		51.193	9.7661	1				18645	6229	11765	11818	18924	18924					-0.008570191487024204
IVNDFAYMK	9	Unmodified	_IVNDFAYMK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7764282226562	2	550.775885	1099.53722	0.56042	0.00030867	0.59298	0.0003266	1.1534	0.00063526	550.7761281514129	37.388	0.20898	37.388	37.316	37.525	0					9	6	2	0	0	0	0.082776	1	14173	14173		83.647	26.926	1	270890			18646	6229	11765	11818	18925	18925					-0.008570191487024204
IVNDFAYMK	9	Unmodified	_IVNDFAYMK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.7757568359375	2	550.775885	1099.53722	0.29894	0.00016465	0.48537	0.00026733	0.78431	0.00043198	550.7761324124483	37.186	0.38563	37.186	37.059	37.444	0					50	21	4	0	0	0	0.24169	1	12562	12562		56.632	18.821	1	904820			18647	6229	11765	11818	18926	18926					-0.008570191487024204
IVNDFAYMK	9	Unmodified	_IVNDFAYMK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.776123046875	2	550.775885	1099.53722	1.1517	0.00063435	-0.22801	-0.00012558	0.92372	0.00050877	550.7757407259749	37.151	0.37549	37.151	37.02	37.395	0					46	18	4	0	0	0	0.19952	1	13291	13291		61.691	21.119	1	858760			18648	6229	11765	11818	18927	18927					-0.008570191487024204
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(73)K	0	0	1		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7738647460938	2	558.773342	1115.53213	1.2892	0.00072038	-0.63862	-0.00035684	0.65059	0.00036353	558.7732547323985	30.497	0.26057	30.497	30.391	30.652	0					19	10	3	0	0	0	0.12834	1	9709	9709		72.879	35.72	1	144950			18649	6229	11765	11819	18928	18928		258			-0.021013230113112513
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(110)K	0	0	1		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7735595703125	2	558.773342	1115.53213	0.52475	0.00029322	0.0072515	4.052E-06	0.53201	0.00029727	558.7734689614553	30.738	0.3583	30.738	30.641	30.999	0					16	8	3	0	0	0	0.026848	1	11101	11101		112.11	59.171	1	1515000			18650	6229	11765	11819	18929	18929		258			-0.021013230113112513
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(71)K	0	0	1		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.7742919921875	2	558.773342	1115.53213	0.12179	6.8053E-05	0.96459	0.00053899	1.0864	0.00060704	558.773936793359	30.536	0.30411	30.536	30.415	30.719	0					18	11	3	0	0	0	0.13726	1	10034	10034		70.816	26.439	1	260390			18651	6229	11765	11819	18930	18930		258			-0.021013230113112513
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(120)K	0	0	1		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.77392578125	2	558.773342	1115.53213	1.7596	0.0009832	-1.2164	-0.0006797	0.54317	0.00030351	558.7727444036869	30.739	0.41049	30.739	30.633	31.044	0					17	9	3	0	0	0	0.019258	1	11531	11531		123.21	57.405	1	1550000			18652	6229	11765	11819	18931	18931		258			-0.021013230113112513
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(62)K	0	0	1		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7734985351562	2	558.773342	1115.53213	-0.81526	-0.00045555	1.0393	0.00058072	0.22402	0.00012518	558.7741075601238	30.541	0.30452	30.541	30.42	30.724	0					16	8	4	0	0	0	0.19952	1	10401	10401		61.691	26.073	1	301350			18653	6229	11765	11819	18932	18932		258			-0.021013230113112513
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(130)K	0	0	1		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7738037109375	2	558.773342	1115.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.728	1	30.728	30.228	31.228	0								0	0	0	0.00014293	1	11408	11408		134.77	55.053	1				18654	6229	11765	11819	18933	18933		258			-0.021013230113112513
IVNDFAYMKK	10	Unmodified	_IVNDFAYMKK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	410.2178649902344	3	410.218003	1227.63218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.277	1	30.277	29.777	30.777	0								0	0	0	0.35404	1	9926	9926		42.338	4.8299	1				18655	6229	11766	11820	18934	18934					0.027469143224834625
IVNDFAYMKK	10	Unmodified	_IVNDFAYMKK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.21783447265625	3	410.218003	1227.63218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.49	1	30.49	29.99	30.99	0								0	0	0	0.060926	1	11403	11403		88.134	29.887	1				18656	6229	11766	11820	18935	18935					0.027469143224834625
IVNDFAYMKK	10	Unmodified	_IVNDFAYMKK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.82421875	2	614.823366	1227.63218	0.34709	0.0002134	0.37382	0.00022984	0.72091	0.00044323	614.8234225600793	30.488	0.16267	30.488	30.384	30.546	0					6	3	2	0	0	0	0.071575	1	11390	11390		90.601	41.159	1	226440			18657	6229	11766	11820	18936	18936					0.027469143224834625
IVNDFAYMKK	10	Unmodified	_IVNDFAYMKK_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.5527038574219	3	410.218003	1227.63218	-0.48708	-0.00019981	0.7205	0.00029556	0.23342	9.5753E-05	410.2184244978816	30.449	0.11536	30.449	30.342	30.458	0					8	2	4	0	0	0	0.36432	1	11261	11261		60.167	16.516	1	728300			18658	6229	11766	11820	18937	18937					0.027469143224834625
IVNGHSEI	8	Unmodified	_IVNGHSEI_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7294616699219	2	434.729792	867.445031	-0.43445	-0.00018887	-0.018283	-7.9483E-06	-0.45273	-0.00019682	434.72969357164664	28.886	0.21038	28.886	28.796	29.007	0					11	5	3	0	0	0	0.41952	1	10266	10266		68.485	8.1907	1	182410			18659	6532	11767	11821	18938	18938					0.006006388292917109
IVNKKTKSN	9	Unmodified	_IVNKKTKSN_					0	0	0			REV__RANBP6|p.T977I|1|0.39|ENSG00000137040|chr9:6012678-6012678|G/A|missense_variant	REV__RANBP6|p.T977I|1|0.39|ENSG00000137040|chr9:6012678-6012678|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.3140258789062	2	516.314023	1030.61349	-0.30839	-0.00015923	0.78055	0.00040301	0.47216	0.00024378	516.3143585355673	55.589	0.2279	55.589	55.474	55.702	0					35	14	3	0	0	0	0.54081	1	19965	19965		20.947	0.95016	1	256960	+		18660	14898	11768	11822	18939	18939					0.09941120742928433
IVNNENKDVL	10	Unmodified	_IVNNENKDVL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.3123168945312	2	579.311677	1156.6088	3.2548	0.0018856	-1.9296	-0.0011178	1.3252	0.00076771	579.3104337473238	26.78	0.31489	26.78	26.57	26.885	0					11	6	2	0	0	0	0.15477	1	9517	9517		85.862	20.396	1	749880			18661	5960	11769	11823	18940	18940					0.036761918094953216
IVNPLSRK	8	Unmodified	_IVNPLSRK_					0	0	0			REV__ENST00000534277.5_1_16:31765895-31765964:+|nuORF	REV__ENST00000534277.5_1_16:31765895-31765964:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7925720214844	2	463.792727	925.5709	-2.3848	-0.001106	1.6944	0.00078584	-0.69038	-0.00032019	463.7936424863124	28.243	0.18652	28.243	28.176	28.363	0					11	4	3	0	0	0	0.65148	1	9353	9353		40.778	11.629	1	161220	+		18662	20089	11770	11824	18941	18941					0.1051377040537318
IVNQINLL	8	Unmodified	_IVNQINLL_					0	0	0			REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	REV__tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7867126464844	2	463.78711	925.559667	-0.72504	-0.00033626	0.45016	0.00020878	-0.27488	-0.00012749	463.78728650555263	30.57	0.30411	30.57	30.415	30.719	0					15	11	2	0	0	0	0.65276	1	10060	10060		40.573	4.9543	1	71399	+		18663	22119	11771	11825	18942	18942					0.09390948311227021
IVNRGITPK	9	Unmodified	_IVNRGITPK_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.2099609375	3	333.209948	996.608014	0.5211	0.00017364	-0.38338	-0.00012775	0.13773	4.5892E-05	333.2097814641684	18.65	0.17528	18.65	18.547	18.723	0					11	4	3	0	0	0	0.25761	1	5500	5500		54.722	9.7001	1	352240			18664	3975	11772	11826	18943	18943					0.10957441951131841
IVNRGITPK	9	Unmodified	_IVNRGITPK_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.3111267089844	2	499.311284	996.608014	0.86155	0.00043018	-1.1843	-0.00059134	-0.32277	-0.00016116	499.3107225599074	18.603	0.16748	18.603	18.493	18.661	0					9	3	3	0	0	0	0.070005	1	5752	5752		93.195	16.421	1	709720			18665	3975	11772	11826	18944	18944					0.10957441951131841
IVNSWGTPG	9	Unmodified	_IVNSWGTPG_					0	0	0		ENST00000338154.10_1_X:53965491-53965584:-|nuORF	ENST00000338154.10_1_X:53965491-53965584:-|nuORF	ENST00000338154.10_1_X:53965491-53965584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7376403808594	2	465.737617	929.460681	0.67247	0.0003132	-2.1728	-0.001012	-1.5003	-0.00069876	465.73666696534457	34.436	0.50179	34.436	34.303	34.805	0					18	13	2	0	0	0	0.23186	1	13296	13296		57.811	4.4598	1	230710			18666	8713	11773	11827	18945	18945					-0.0068707465366060205
IVPENTHR	8	Unmodified	_IVPENTHR_					0	0	0			REV__ENSG00000147246|ENST00000276198|HTR2C	REV__ENSG00000147246|ENST00000276198|HTR2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.5101623535156	3	322.510286	964.509028	-0.024321	-7.8438E-06	-0.22862	-7.3731E-05	-0.25294	-8.1575E-05	322.5101851485697	21.07	0.14062	21.07	20.979	21.12	0					8	3	3	0	0	0	0.61938	1	6053	6053		45.952	1.8352	1	279270	+		18667	15342	11774	11828	18946	18946					0.02535418986235527
IVPGNVKSL	9	Unmodified	_IVPGNVKSL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7867736816406	2	463.78711	925.559667	-0.442	-0.00020499	-0.7173	-0.00033267	-1.1593	-0.00053767	463.7868484306385	30.484	0.19587	30.484	30.414	30.61	0					10	7	2	0	0	0	0.36892	1	9721	9721		44.377	8.7589	1	54531			18668	2718	11775	11829	18947	18947					0.09390948311227021
IVPKEPPPE	9	Unmodified	_IVPKEPPPE_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2847595214844	2	503.2844	1004.55425	2.9279	0.0014736	-2.6511	-0.0013343	0.27679	0.00013931	503.28303262077077	37.928	0.29001	37.928	37.821	38.111	0					11	6	2	0	0	0	0.15163	1	14897	14897		67.494	0.16648	1	389560			18669	1957	11776	11830	18948	18948					0.0521522472874949
IVPSAVTTE	9	Unmodified	_IVPSAVTTE_					0	0	0			REV__PLCB2|p.F171Sfs*43|1|0.15|ENSG00000137841|chr15:40302027-40302027|A/-|frameshift_variant	REV__PLCB2|p.F171Sfs*43|1|0.15|ENSG00000137841|chr15:40302027-40302027|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7516784667969	2	458.752933	915.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.127	1	43.127	42.627	43.627	0								0	0	0	0.20652	1	16897	16897		50.025	12.865	1		+		18670	14941	11777	11831	18949	18949					0.03018658940709429
IVQASVSLK	9	Unmodified	_IVQASVSLK_					0	0	0		nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7922058105469	2	472.792392	943.570232	0.64866	0.00030668	0.13923	6.5825E-05	0.78788	0.0003725	472.7921495238002	28.101	0.17963	28.101	28.015	28.195	0					6	4	2	0	0	0	0.095583	1	9884	9884		80.455	14.025	1	59389			18671	2222	11778	11832	18950	18950					0.09618930965655181
IVQASVSLK	9	Unmodified	_IVQASVSLK_					0	0	0		nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.792236328125	2	472.792392	943.570232	-0.12262	-5.7972E-05	-0.060162	-2.8444E-05	-0.18278	-8.6416E-05	472.7924489731101	28.064	0.14857	28.064	27.964	28.112	0					6	3	2	0	0	0	0.22837	1	10230	10230		58.23	8.2054	1	182300			18672	2222	11778	11832	18951	18951					0.09618930965655181
IVQASVSLK	9	Unmodified	_IVQASVSLK_					0	0	0		nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.79193115234375	2	472.792392	943.570232	-0.57287	-0.00027085	-0.24902	-0.00011773	-0.82189	-0.00038858	472.79222828014554	28.018	0.21626	28.018	27.91	28.126	0					7	4	2	0	0	0	0.41958	1	10114	10114		40.058	2.2467	1	364760			18673	2222	11778	11832	18952	18952					0.09618930965655181
IVQDEILAH	9	Unmodified	_IVQDEILAH_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2849731445312	2	519.284931	1036.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.971	1	32.971	32.471	33.471	0								0	0	0	0.084509	1	12152	12152		79.713	44.094	1				18674	6296	11779	11833	18953	18953					0.03849439097643881
IVQDEILAH	9	Unmodified	_IVQDEILAH_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.786376953125	2	519.284931	1036.55531	1.1278	0.00058565	-1.2465	-0.00064727	-0.11865	-6.1615E-05	519.7856197610198	32.892	0.18524	32.892	32.802	32.987	0					7	4	2	0	0	0	0.18505	1	12552	12552		65.465	33.936	1	98889			18675	6296	11779	11833	18954	18954					0.03849439097643881
IVQDEILAH	9	Unmodified	_IVQDEILAH_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2850952148438	2	519.284931	1036.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.908	1	32.908	32.408	33.408	0								0	0	0	0.02816	1	12449	12449		90.601	27.622	1				18676	6296	11779	11833	18955	18955					0.03849439097643881
IVQGMFDTY	9	Unmodified	_IVQGMFDTY_					0	0	0			REV__SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	REV__SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2489013671875	2	537.252243	1072.48993	-0.38105	-0.00020472	-3.0508	-0.0016391	-3.4319	-0.0018438	537.2499835581126	28.35	0.32381	28.35	28.204	28.528	0					17	11	2	0	0	0	0.30951	1	9117	9117		49.442	1.7842	1	98626	+		18677	12942	11780	11834	18956	18956					-0.043412984196947946
IVQLEGYQK	9	Unmodified	_IVQLEGYQK_					0	0	0		ENST00000457147.1_1_10:75013703-75013874:+|nuORF	ENST00000457147.1_1_10:75013703-75013874:+|nuORF	ENST00000457147.1_1_10:75013703-75013874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7451171875	2	539.300581	1076.58661	1.0155	0.00054765	2.6584	0.0014337	3.6739	0.0019813	539.3020081617258	20.092	0.090425	20.092	20.01	20.1	0					6	2	3	0	0	0	0.61124	1	5562	5562		17.365	0.89182	1	186100			18678	9693	11781	11835	18957	18957					0.05138012131760661
IVQNGKHFK	9	Unmodified	_IVQNGKHFK_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.8094482421875	2	535.808908	1069.60326	0.63464	0.00034005	-0.1328	-7.1153E-05	0.50184	0.00026889	535.8089905764475	14.951	0.11083	14.951	14.918	15.029	0					9	4	3	0	0	0	0.036372	1	3167	3167		102.77	15.019	1	217670			18679	5581	11782	11836	18958	18958					0.07124557808378995
IVQNGKHFK	9	Unmodified	_IVQNGKHFK_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.8093872070312	2	535.808908	1069.60326	0.18769	0.00010057	0.1992	0.00010673	0.38689	0.0002073	535.8092901837132	15.242	0.21939	15.242	15.19	15.41	0					15	5	4	0	0	0	0.018419	1	3897	3897		124.59	19.848	1	1658700			18680	5581	11782	11836	18959	18959					0.07124557808378995
IVQNGKHFK	9	Unmodified	_IVQNGKHFK_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.8091430664062	2	535.808908	1069.60326	0.29161	0.00015625	0.11552	6.1899E-05	0.40713	0.00021814	535.8090147914136	15.221	0.15849	15.221	15.164	15.322	0					6	3	2	0	0	0	0.018419	1	4126	4126		124.59	19.848	1	1163400			18681	5581	11782	11836	18960	18960					0.07124557808378995
IVQNGKHFK	9	Unmodified	_IVQNGKHFK_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.810302734375	2	535.808908	1069.60326	-1.372	-0.00073513	3.1942	0.0017115	1.8222	0.00097633	535.8109544380732	15.068	0.087622	15.068	15.007	15.094	0					6	3	2	0	0	0	0.1236	1	3313	3313		73.975	2.5968	1	111770			18682	5581	11782	11836	18961	18961					0.07124557808378995
IVQNGKHFK	9	Unmodified	_IVQNGKHFK_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.8090209960938	2	535.808908	1069.60326	3.3578	0.0017991	-3.8008	-0.0020365	-0.44301	-0.00023737	535.8072876601766	15.2	0.16743	15.2	15.13	15.297	0					11	3	4	0	0	0	0.023949	1	3961	3961		115.46	16.084	1	1783400			18683	5581	11782	11836	18962	18962					0.07124557808378995
IVQSPSLLS	9	Unmodified	_IVQSPSLLS_					0	0	0		ENST00000588432.1_1_19:44438689-44439413:-|nuORF	ENST00000588432.1_1_19:44438689-44439413:-|nuORF	ENST00000588432.1_1_19:44438689-44439413:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2763366699219	2	472.276575	942.538597	-0.56717	-0.00026786	-0.50983	-0.00024078	-1.077	-0.00050864	472.2766513053364	35.296	0.52475	35.296	35.129	35.654	0					21	10	3	0	0	0	0.2873	1	13577	13577		51.335	0.14276	1	181610			18684	10923	11783	11837	18963	18963					0.06502938211713172
IVREFSQA	8	Unmodified	_IVREFSQA_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.25848388671875	2	475.258717	948.50288	-2.665	-0.0012666	1.8138	0.000862	-0.85128	-0.00040458	475.25942943188585	33.83	0.3254	33.83	33.702	34.027	0					14	9	2	0	0	0	0.5676	1	11909	11909		53.351	7.3995	1	123890			18685	5926	11784	11838	18964	18964					0.02656900754709568
IVRGQRHR	8	Unmodified	_IVRGQRHR_					0	0	0			REV__ENSG00000205269|ENST00000379426|TMEM170B	REV__ENSG00000205269|ENST00000379426|TMEM170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.31158447265625	2	511.309941	1020.60533	1.1242	0.00057483	-0.34375	-0.00017576	0.78048	0.00039907	511.3097365862126	30.941	0.22512	30.941	30.852	31.077	0					17	9	2	0	0	0	0.57802	1	9886	9886		52.299	4.3836	1	154270	+		18686	17518	11785	11839	18965	18965					0.09585031336837346
IVRGQRHR	8	Unmodified	_IVRGQRHR_					0	0	0			REV__ENSG00000205269|ENST00000379426|TMEM170B	REV__ENSG00000205269|ENST00000379426|TMEM170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.3105163574219	2	511.309941	1020.60533	1.0087	0.00051577	-0.18577	-9.4988E-05	0.82295	0.00042078	511.3098938528788	31.217	0.38257	31.217	31.08	31.463	0					24	9	4	0	0	0	0.65276	1	11331	11331		40.573	4.9543	1	1463900	+		18687	17518	11785	11839	18966	18966					0.09585031336837346
IVRGQRHR	8	Unmodified	_IVRGQRHR_					0	0	0			REV__ENSG00000205269|ENST00000379426|TMEM170B	REV__ENSG00000205269|ENST00000379426|TMEM170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.3101806640625	2	511.309941	1020.60533	-0.0020109	-1.0282E-06	0.57444	0.00029372	0.57243	0.00029269	511.31008893450087	31.289	0.42283	31.289	31.108	31.531	0					24	10	4	0	0	0	0.75243	1	11345	11345		26.796	0.10319	1	1127000	+		18688	17518	11785	11839	18967	18967					0.09585031336837346
IVRGQRHR	8	Unmodified	_IVRGQRHR_					0	0	0			REV__ENSG00000205269|ENST00000379426|TMEM170B	REV__ENSG00000205269|ENST00000379426|TMEM170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.31011962890625	2	511.309941	1020.60533	-0.3805	-0.00019455	1.0654	0.00054476	0.68492	0.00035021	511.31038534301905	31.061	0.33146	31.061	30.87	31.201	0					30	12	3	0	0	0	0.52345	1	10218	10218		57.811	8.3697	1	794500	+		18689	17518	11785	11839	18968	18968					0.09585031336837346
IVRGQRHR	8	Unmodified	_IVRGQRHR_					0	0	0			REV__ENSG00000205269|ENST00000379426|TMEM170B	REV__ENSG00000205269|ENST00000379426|TMEM170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.31036376953125	2	511.309941	1020.60533	0.36533	0.00018679	0.25972	0.00013279	0.62504	0.00031959	511.31008953576946	31.064	0.31121	31.064	30.864	31.175	0					21	8	3	0	0	0	0.65276	1	10611	10611		40.573	4.9543	1	374540	+		18690	17518	11785	11839	18969	18969					0.09585031336837346
IVRGQRHR	8	Unmodified	_IVRGQRHR_					0	0	0			REV__ENSG00000205269|ENST00000379426|TMEM170B	REV__ENSG00000205269|ENST00000379426|TMEM170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.3099060058594	2	511.309941	1020.60533	1.397	0.00071428	-1.1785	-0.00060257	0.21848	0.00011171	511.3093155312795	31.257	0.46175	31.257	31.059	31.521	0					28	9	4	0	0	0	0.60719	1	11613	11613		47.916	3.3845	1	2191900	+		18691	17518	11785	11839	18970	18970					0.09585031336837346
IVRPLGGLAG	10	Unmodified	_IVRPLGGLAG_					0	0	0			REV__nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	REV__nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.8003845214844	2	476.800552	951.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.312	1	16.312	15.812	16.812	0								0	0	0	0.40862	1	4636	4636		27.882	1.0861	1		+		18692	14429	11786	11840	18971	18971					0.10882056922434913
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.279541015625	2	504.279649	1006.54475	0.64338	0.00032444	-0.43346	-0.00021858	0.20993	0.00010586	504.27933442637874	36.151	0.25029	36.151	36.062	36.312	0					21	12	3	0	0	0	0.032052	1	11854	11854		107.01	38.221	1	196190			18693	2636	11787	11841	18972	18972					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.279541015625	2	504.279649	1006.54475	0.76964	0.00038811	-1.2689	-0.00063988	-0.49927	-0.00025177	504.2790075228641	36.422	0.47714	36.422	36.247	36.724	0					24	13	2	0	0	0	0.015496	1	13728	13728		129.42	49.97	1	1705600			18694	2636	11787	11841	18973	18973					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2803955078125	2	504.279649	1006.54475	3.6511	0.0018412	-2.8064	-0.0014152	0.84466	0.00042594	504.27826608623684	36.211	0.2179	36.211	36.134	36.352	0					18	10	3	0	0	0	0.037924	1	12266	12266		101.25	45.748	1	118100			18695	2636	11787	11841	18974	18974					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.279541015625	2	504.279649	1006.54475	0.097503	4.9169E-05	-0.15071	-7.5998E-05	-0.053204	-2.683E-05	504.27963514996395	36.398	0.37167	36.398	36.292	36.663	0					24	10	3	0	0	0	0.015496	1	14165	14165		129.42	60.634	1	964050			18696	2636	11787	11841	18975	18975					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2802429199219	2	504.279649	1006.54475	-0.016351	-8.2456E-06	0.85771	0.00043253	0.84136	0.00042428	504.28003263524323	36.222	0.2169	36.222	36.114	36.331	0					15	8	3	0	0	0	0.037924	1	12945	12945		101.25	44.532	1	167840			18697	2636	11787	11841	18976	18976					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2793273925781	2	504.279649	1006.54475	0.12027	6.0652E-05	-0.49291	-0.00024857	-0.37264	-0.00018791	504.27936714518313	36.215	0.31607	36.215	36.036	36.352	0					17	11	2	0	0	0	0.10915	1	12955	12955		77.318	27.876	1	122110			18698	2636	11787	11841	18977	18977					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2786560058594	2	504.279649	1006.54475	-0.36541	-0.00018427	-0.29402	-0.00014827	-0.65943	-0.00033254	504.2795972973078	36.41	0.76461	36.41	36.132	36.897	0					45	15	5	0	0	0	0.0097668	1	14104	14104		141.52	70.225	1	1500400			18699	2636	11787	11841	18978	18978					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2795104980469	2	504.279649	1006.54475	1.2005	0.00060539	-1.9043	-0.00096029	-0.70377	-0.00035489	504.27869091692617	36.371	0.86552	36.371	35.963	36.829	0					25	17	2	0	0	0	0.022525	1	14115	14115		117.81	49.024	1	1976300			18700	2636	11787	11841	18979	18979					0.04173456443231771
IVSGNTVLAAK	11	Unmodified	_IVSGNTVLAAK_					0	0	0		CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant;CHD8|p.V1538*|1|0.4|ENSG00000100888|chr14:21400267-21400267|T/-|frameshift_variant;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.I351Nfs*70|1|0.25|ENSG00000100888|chr14:21429127-21429128|-/T|frameshift_variant	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2702026367188	2	536.821681	1071.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.602	1	12.602	12.102	13.102	0								0	0	0	0.45614	1	2721	2721		24.519	13.008	1				18701	507	11788	11842	18980	18980					0.09585987540117458
IVSGSDVEH	9	Unmodified	_IVSGSDVEH_					0	0	0			REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.72967529296875	2	471.729989	941.445425	-1.4027	-0.00066169	0.37124	0.00017513	-1.0314	-0.00048657	471.730210579978	21.46	0.13372	21.46	21.386	21.52	0					11	4	3	0	0	0	0.43426	1	6156	6156		38.806	2.3594	1	218340	+		18702	22065	11789	11843	18981	18981					-0.02763986241529892
IVSGVVGCVI	10	Unmodified	_IVSGVVGCVI_					0	0	0		ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2754211425781	2	473.275521	944.536489	-0.57939	-0.00027421	0.62644	0.00029648	0.047055	2.227E-05	473.2756830496565	30.056	0.26728	30.056	29.896	30.163	0					8	5	2	0	0	0	0.47621	1	11073	11073		47.916	5.4411	1	168050			18703	7589	11790	11844	18982	18982					0.06200186202261193
IVSKHTYIC	9	Unmodified	_IVSKHTYIC_					0	0	0		ADGRG4|p.Q246Hfs*32|1|0.09|ENSG00000156920|chrX:136344443-136344450|AGATAGAT/-|frameshift_variant	ADGRG4|p.Q246Hfs*32|1|0.09|ENSG00000156920|chrX:136344443-136344450|AGATAGAT/-|frameshift_variant	ADGRG4|p.Q246Hfs*32|1|0.09|ENSG00000156920|chrX:136344443-136344450|AGATAGAT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2827758789062	2	532.283877	1062.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.242	1	36.242	35.742	36.742	0								0	0	0	0.2591	1	12966	12966		42.396	12.078	1				18704	79	11791	11845	18983	18983					0.024426870882052754
IVSLMHHF	8	Unmodified	_IVSLMHHF_					0	0	0			REV__NCAPD3|p.Q302H|1|0.25|ENSG00000151503|chr11:134206709-134206709|T/G|missense_variant	REV__NCAPD3|p.Q302H|1|0.25|ENSG00000151503|chr11:134206709-134206709|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.26116943359375	2	492.260205	982.505857	-1.2634	-0.00062191	3.2201	0.0015851	1.9567	0.00096322	492.2616670745851	29.488	0.059649	29.488	29.457	29.516	0					4	2	2	0	0	0	0.61433	1	9610	9610		46.766	5.3398	1	42810	+		18705	21275	11792	11846	18984	18984					0.013904526078590607
IVSRSILAP	9	Unmodified	_IVSRSILAP_					0	0	0			REV__ENSG00000153002|ENST00000282957|CPB1	REV__ENSG00000153002|ENST00000282957|CPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.300537109375	2	478.300384	954.586216	0.65197	0.00031184	-1.2696	-0.00060724	-0.61761	-0.0002954	478.29983049742196	42.574	0.22287	42.574	42.481	42.704	0					17	11	2	0	0	0	0.35045	1	16698	16698		45.952	3.4775	1	106150	+		18706	15526	11793	11847	18985	18985					0.10710637202566886
IVSTSQVPIP	10	Unmodified	_IVSTSQVPIP_					0	0	0		nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	347.53765869140625	3	347.53773	1039.59136	0.18413	6.3993E-05	-0.21754	-7.5602E-05	-0.033405	-1.1609E-05	347.5375556108512	26.876	0.13186	26.876	26.811	26.943	0					7	4	2	0	0	0	0.56015	1	8223	8223		35.152	6.0025	1	157310			18707	6193	11794	11848	18986	18986					0.07314896274510829
IVSTSQVPIP	10	Unmodified	_IVSTSQVPIP_					0	0	0		nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.53759765625	3	347.53773	1039.59136	0.50061	0.00017398	-1.2317	-0.00042806	-0.7311	-0.00025409	347.5374903230857	27.123	0.25609	27.123	27.037	27.293	0					22	6	6	0	0	0	0.63073	1	9444	9444		28.081	2.9555	1	1719400			18708	6193	11794	11848	18987	18987					0.07314896274510829
IVSTSQVPIP	10	Unmodified	_IVSTSQVPIP_					0	0	0		nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.53753662109375	3	347.53773	1039.59136	0.5151	0.00017901	-0.67898	-0.00023597	-0.16388	-5.6955E-05	347.53751530127704	27.144	0.26498	27.144	27.039	27.304	0					14	5	4	0	0	0	0.52707	1	9787	9787		38.754	15.231	1	1094700			18709	6193	11794	11848	18988	18988					0.07314896274510829
IVSVEVFDE	9	Unmodified	_IVSVEVFDE_					0	0	0		tr|U7T240|U7T240_FUSNUUDP-N-acetylenolpyruvoylglucosaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murBPE=3SV=1	tr|U7T240|U7T240_FUSNUUDP-N-acetylenolpyruvoylglucosaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murBPE=3SV=1	tr|U7T240|U7T240_FUSNUUDP-N-acetylenolpyruvoylglucosaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7642211914062	2	518.763497	1035.51244	-0.35791	-0.00018567	2.0415	0.0010591	1.6836	0.0008734	518.7645060868766	21.199	0.46272	21.199	20.995	21.458	0					16	9	2	0	0	0	0.35045	1	7007	7007		45.952	0	1	387300			18710	22929	11795	11849	18989	18989					-0.003893757504329187
IVTKLDDK	8	Unmodified	_IVTKLDDK_					0	0	0		TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6;TDRD6|p.N917Ifs*2|1|0.35|ENSG00000180113|chr6:46690872-46690872|A/-|frameshift_variant	TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant	TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.27618408203125	2	466.276575	930.538597	0.22301	0.00010399	0.15234	7.1033E-05	0.37536	0.00017502	466.27664966131806	31.688	0.26523	31.688	31.545	31.811	0					9	6	2	0	0	0	0.61925	1	11547	11547		45.972	0.020292	1	232710			18711	6793	11796	11850	18990	18990					0.07054938211706485
IVTKTIENK	9	Unmodified	_IVTKTIENK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.31689453125	2	523.316232	1044.61791	0.36369	0.00019033	0.62823	0.00032876	0.99192	0.00051909	523.316763339501	17.903	0.10055	17.903	17.855	17.955	0					4	2	2	0	0	0	0.30951	1	4594	4594		49.442	10.635	1	71807			18712	4594	11797	11851	18991	18991					0.09738585165860059
IVTLNWSYA	9	Unmodified	_IVTLNWSYA_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.78076171875	2	533.782025	1065.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.118	1	24.118	23.618	24.618	0								0	0	0	0.27025	1	8275	8275		40.778	2.9666	1		+		18713	17278	11798	11852	18992	18992					0.01934340586012695
IVTLTRITTE	10	Unmodified	_IVTLTRITTE_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.840087890625	2	573.840071	1145.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.615	1	24.615	24.115	25.115	0								0	0	0	0.40634	1	8637	8637		17.468	9.2329	1				18714	5669	11799	11853	18993	18993					0.0985823936603083
IVTSEVRQ	8	Unmodified	_IVTSEVRQ_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2638244628906	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.562	1	13.562	13.062	14.062	0								0	0	0	1.7419	1	3177	3177		24.203	0	1		+		18715	14500	11800	11854	18994	18994					0.04540883409151775
IVVAGELPH	9	Unmodified	_IVVAGELPH_					0	0	0			REV__ENST00000481337.5_1_3:105238990-105260608:+|nuORF	REV__ENST00000481337.5_1_3:105238990-105260608:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7710266113281	2	467.77146	933.528367	-0.51015	-0.00023863	0.59307	0.00027742	0.082928	3.8791E-05	467.77161379284286	33.48	0.60655	33.48	33.151	33.757	0					27	12	3	0	0	0	0.49003	1	12614	12614		33.516	1.5607	1	462740	+		18716	12135	11801	11855	18995	18995					0.058943752771256186
IVVAPAGRCEV	11	Unmodified	_IVVAPAGRCEV_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	371.8731994628906	3	371.874348	1112.60121	-1.0387	-0.00038628	-1.5979	-0.00059421	-2.6366	-0.00098049	371.8734715378217	20.5	0.12463	20.5	20.438	20.563	0					6	4	2	0	0	0	0.66915	1	5743	5743		30.569	2.4874	1	86239	+		18717	15484	11802	11856	18996	18996					0.04941761008240064
IVVEHIIMK	9	Oxidation (M)	_IVVEHIIM(Oxidation (M))K_		IVVEHIIM(1)K		IVVEHIIM(57)K	0	0	1		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.3232421875	2	549.323002	1096.63145	1.2615	0.00069297	-0.99793	-0.00054818	0.26357	0.00014478	549.322737920871	28.379	0.17085	28.379	28.296	28.467	0					7	5	2	0	0	0	0.24095	1	8859	8859		56.721	14.325	1	60038			18718	2569	11803	11857	18997	18997		111			0.08700119673426343
IVVEHIIMK	9	Oxidation (M)	_IVVEHIIM(Oxidation (M))K_		IVVEHIIM(1)K		IVVEHIIM(130)K	0	0	1		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.3233642578125	2	549.323002	1096.63145	0.51553	0.00028319	0.31364	0.00017229	0.82917	0.00045548	549.3232876901094	28.639	0.33123	28.639	28.515	28.846	0					14	8	2	0	0	0	0.014688	1	10130	10130		131.03	55.988	1	496640			18719	2569	11803	11857	18998	18998		111			0.08700119673426343
IVVEHIIMK	9	Oxidation (M)	_IVVEHIIM(Oxidation (M))K_		IVVEHIIM(1)K		IVVEHIIM(77)K	0	0	1		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.323486328125	2	549.323002	1096.63145	-1.4877	-0.00081721	0.88397	0.00048558	-0.6037	-0.00033162	549.8241832650197	28.472	0.2071	28.472	28.353	28.56	0					8	5	2	0	0	0	0.1115	1	9465	9465		76.774	34.3	1	98876			18720	2569	11803	11857	18999	18999		111			0.08700119673426343
IVVEHIIMK	9	Unmodified	_IVVEHIIMK_					0	0	0		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.3262329101562	2	541.325545	1080.63654	1.053	0.00057003	-0.558	-0.00030206	0.49502	0.00026797	541.3254102639099	32.284	0.19161	32.284	32.207	32.398	0					20	8	3	0	0	0	0.070005	1	10417	10417		82.241	45.081	1	256050			18721	2569	11803	11858	19000	19000					0.09944423536057911
IVVEHIIMK	9	Unmodified	_IVVEHIIMK_					0	0	0		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.3259887695312	2	541.325545	1080.63654	0.29172	0.00015792	0.089062	4.8211E-05	0.38079	0.00020613	541.325759126586	32.539	0.41571	32.539	32.41	32.826	0					27	10	4	0	0	0	0.019258	1	11940	11940		118.74	74.212	1	1878300			18722	2569	11803	11858	19001	19001					0.09944423536057911
IVVEHIIMK	9	Unmodified	_IVVEHIIMK_					0	0	0		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.5538330078125	3	361.219455	1080.63654	0.48102	0.00017375	-0.67403	-0.00024347	-0.19301	-6.9718E-05	361.21917167549475	32.535	0.21418	32.535	32.454	32.668	0					12	5	3	0	0	0	0.36892	1	11946	11946		44.377	15.207	1	687400			18723	2569	11803	11858	19002	19002					0.09944423536057911
IVVEHIIMK	9	Unmodified	_IVVEHIIMK_					0	0	0		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.3267211914062	2	541.325545	1080.63654	0.10198	5.5203E-05	0.64786	0.00035071	0.74984	0.00040591	541.3260885491055	32.323	0.2739	32.323	32.252	32.526	0					23	11	3	0	0	0	0.070005	1	10765	10765		71.877	25.926	1	233830			18724	2569	11803	11858	19003	19003					0.09944423536057911
IVVEHIIMK	9	Unmodified	_IVVEHIIMK_					0	0	0		TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant;ENSG00000109133|ENST00000504986|TMEM33	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	TMEM33|p.L211P|1|0.2|ENSG00000109133|chr4:41954087-41954087|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.3265991210938	2	541.325545	1080.63654	0.3115	0.00016862	0.78704	0.00042605	1.0985	0.00059467	541.3262262543715	32.484	0.16961	32.484	32.385	32.555	0					7	4	2	0	0	0	0.30841	1	12356	12356		42.396	20.694	1	118960			18725	2569	11803	11858	19004	19004					0.09944423536057911
IVVLHQADI	9	Unmodified	_IVVLHQADI_					0	0	0		ENST00000485801.1_1_3:132120486-132120636:+|nuORF	ENST00000485801.1_1_3:132120486-132120636:+|nuORF	ENST00000485801.1_1_3:132120486-132120636:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.827	1	41.827	41.327	42.327	0								0	0	0	0.34228	1	16439	16439		19.997	0	1				18726	10011	11804	11859	19005	19005					0.0781033333993264
IVVNKQGQ	8	Unmodified	_IVVNKQGQ_					0	0	0		ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000397467.2_1_3:1947466-1947595:+|nuORF	ENST00000397467.2_1_3:1947466-1947595:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.76129150390625	2	443.261259	884.507966	-0.49658	-0.00022011	0.1302	5.7714E-05	-0.36637	-0.0001624	443.2612720235387	22.145	0.41659	22.145	21.936	22.353	0					20	8	4	0	0	0	0.65276	1	7286	7286		40.573	1.7665	1	6605000			18727	9220	11805	11860	19006	19006					0.061092046173257586
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.5889587402344	3	379.588648	1135.74411	-1.1161	-0.00042368	0.78128	0.00029657	-0.33486	-0.00012711	379.588916215186	30.246	0.19845	30.246	30.118	30.316	0					18	7	3	0	0	0	0.44025	1	9897	9897		48.602	22.538	1	230080			18728	8070	11806	11861	19007	19007					0.18167136461761402
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.8797607421875	2	568.879333	1135.74411	0.83803	0.00047674	-0.33675	-0.00019157	0.50129	0.00028517	568.8790621086547	30.471	0.21183	30.471	30.317	30.529	0					7	4	2	0	0	0	0.42065	1	11383	11383		40.778	18.818	1	84582			18729	8070	11806	11861	19008	19008					0.18167136461761402
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.5887451171875	3	379.588648	1135.74411	0.52396	0.00019889	-0.60768	-0.00023067	-0.083723	-3.178E-05	379.5884398746398	30.456	0.56255	30.456	30.179	30.742	0					35	12	4	0	0	0	0.13966	1	11351	11351		81.525	52.948	1	2208400			18730	8070	11806	11861	19009	19009					0.18167136461761402
IVVQTSWVK	9	Unmodified	_IVVQTSWVK_					0	0	0		ENST00000399975.7_1_21:30408602-30409641:+|nuORF;ENST00000399976.6_1_21:30408602-30409641:+|nuORF	ENST00000399975.7_1_21:30408602-30409641:+|nuORF	ENST00000399975.7_1_21:30408602-30409641:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3132934570312	2	530.313492	1058.61243	0.72882	0.0003865	0.1376	7.2974E-05	0.86642	0.00045948	530.3134140038305	36.289	0.16265	36.289	36.233	36.395	0					5	3	2	0	0	0	0.013878	1	14103	14103		132.76	36.567	1	116500			18731	9242	11807	11862	19010	19010					0.08546906374044738
IVVRRDYF	8	Unmodified	_IVVRRDYF_					0	0	0			REV__ENSG00000157014|ENST00000448281|TATDN2	REV__ENSG00000157014|ENST00000448281|TATDN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.3040771484375	2	534.303458	1066.59236	1.7701	0.00094578	-0.25314	-0.00013525	1.517	0.00081053	534.3032589621024	33.72	0.58013	33.72	33.605	34.185	0					23	14	3	0	0	0	0.63077	1	12936	12936		44.117	0	1	1614100	+		18732	15646	11808	11863	19011	19011					0.061731554340894945
IVWNEKLEK	9	Unmodified	_IVWNEKLEK_					0	0	0			REV__ENST00000332843.2_1_8:120079524-120116116:+|nuORF	REV__ENST00000332843.2_1_8:120079524-120116116:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.8909606933594	3	386.888763	1157.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.198	1	20.198	19.698	20.698	0								0	0	0	0.27521	1	6377	6377		40.058	7.3076	1		+		18733	18392	11809	11864	19012	19012					0.07194274057178518
IVYGAAPSLL	10	Unmodified	_IVYGAAPSLL_					0	0	0			REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF	REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2943420410156	2	502.294768	1002.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.409	1	43.409	42.909	43.909	0								0	0	0	0.37816	1	17369	17369		37.159	1.5408	1		+		18734	16634	11810	11865	19013	19013					0.07379815108436105
IWDEQFSSV	9	Unmodified	_IWDEQFSSV_					0	0	0			REV__chr19:41727352-41769320|187|11.17|0.17|6.01|+|1|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|1	REV__chr19:41727352-41769320|187|11.17|0.17|6.01|+|1|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7606811523438	2	555.758746	1109.50294	1.8116	0.0010068	1.5997	0.00088907	3.4113	0.0018959	555.7595856617979	33.534	0.59403	33.534	33.415	34.009	0					28	15	3	0	0	0	0.17854	1	12406	12406		64.207	2.0999	1	207180	+		18735	12480	11811	11866	19014	19014					-0.047431440359332555
IWEEIQIK	8	Unmodified	_IWEEIQIK_					0	0	0		nc|ENSG00000152404|Q2TBE0-2|CWF19L2	nc|ENSG00000152404|Q2TBE0-2|CWF19L2	nc|ENSG00000152404|Q2TBE0-2|CWF19L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7965698242188	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.575	1	33.575	33.075	34.075	0								0	0	0	1.7419	1	11275	11275		53.351	0.41475	1				18736	11583	11812	11867	19015	19015					0.05430913620079991
IWEMARAS	8	Unmodified	_IWEMARAS_					0	0	0			REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.24041748046875	2	482.23947	962.464386	2.3832	0.0011493	-0.29054	-0.00014011	2.0927	0.0010092	482.2394204663898	17.507	0.61423	17.507	17.396	18.01	0					26	12	3	0	0	0	0.34985	1	5048	5048		76.847	2.8719	1	3022000	+		18737	13134	11813	11868	19016	19016					-0.018347281514593305
IWGQVGAA	8	Unmodified	_IWGQVGAA_					0	0	0		ENST00000219789.10_1_16:29874249-29874522:-|nuORF;nc|ENSG00000103502|O14735-2|CDIPT;ENST00000563893.5_1_16:29872371-29874522:-|nuORF	ENST00000219789.10_1_16:29874249-29874522:-|nuORF	ENST00000219789.10_1_16:29874249-29874522:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.2172546386719	2	401.216321	800.418088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.24	1	27.24	26.74	27.74	0								0	0	0	1.7419	1	8886	8886		26.796	2.2921	1				18738	8173	11814	11869	19017	19017					0.009895750087594024
IWGYSAVAAL	10	Unmodified	_IWGYSAVAAL_					0	0	0		ENSG00000186188|ENST00000371481|FFAR4;nc|ENSG00000186188|Q5NUL3-1|FFAR4	ENSG00000186188|ENST00000371481|FFAR4	ENSG00000186188|ENST00000371481|FFAR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.781494140625	2	525.784567	1049.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.432	1	41.432	40.932	41.932	0								0	0	0	0.37816	1	16481	16481		37.159	0	1				18739	7125	11815	11870	19018	19018					0.031786444485987886
IWIDKILTT	9	Unmodified	_IWIDKILTT_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.8306274414062	2	551.828975	1101.6434	1.1478	0.00063341	1.4406	0.00079499	2.5885	0.0014284	551.829693806029	15.996	0.14084	15.996	15.941	16.082	0					7	4	2	0	0	0	0.61124	1	3705	3705		17.365	0.89182	1	72045			18740	3407	11816	11871	19019	19019					0.09664059688270754
IWKDDCLL	8	Unmodified	_IWKDDCLL_					0	0	0		ENSG00000081014|ENST00000261842|AP4E1;nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENST00000561397.1_1_15:51289960-51293240:+|nuORF	ENSG00000081014|ENST00000261842|AP4E1;ENST00000561397.1_1_15:51289960-51293240:+|nuORF	ENST00000561397.1_1_15:51289960-51293240:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.25927734375	2	503.257328	1004.5001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.191	1	31.191	30.691	31.691	0								0	0	0	1.7419	1	10007	10007		68.485	8.1907	1				18741	1650;10709	11817	11872	19020	19020					-0.001966906944630864
IWKRLNDHGK	10	Unmodified	_IWKRLNDHGK_					0	0	0		nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	633.8555908203125	2	633.856921	1265.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.257	1	36.257	35.757	36.757	0								0	0	0	0.37602	1	14106	14106		37.812	3.639	1				18742	11432	11818	11873	19021	19021					0.07706705648433854
IWLRSVANL	9	Unmodified	_IWLRSVANL_					0	0	0		tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.3184814453125	2	536.319109	1070.62366	-0.48817	-0.00026182	-1.4799	-0.00079369	-1.9681	-0.0010555	536.3181871600713	17.392	0.082602	17.392	17.336	17.418	0					5	3	2	0	0	0	0.50858	1	4356	4356		6.7355	0	1	39713			18743	23003	11819	11874	19022	19022					0.09117728468186215
IWRRAGGRLH	10	Unmodified	_IWRRAGGRLH_					0	0	0		ENSG00000101213|ENST00000542869|PTK6	ENSG00000101213|ENST00000542869|PTK6	ENSG00000101213|ENST00000542869|PTK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.8577270507812	2	611.357422	1220.70029	-0.80796	-0.00049395	-1.3819	-0.00084482	-2.1898	-0.0013388	611.3566036015508	52.649	0.48621	52.649	52.467	52.953	0					48	30	2	0	0	0	0.7005	1	18654	18654		21.96	1.9631	1	76336			18744	2102	11820	11875	19023	19023					0.09876964808040611
IWSHPIDSY	9	Unmodified	_IWSHPIDSY_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.7695922851562	2	559.269281	1116.52401	1.7776	0.00099418	-1.1067	-0.00061892	0.67099	0.00037526	559.2706838469898	36.158	0.41938	36.158	36.052	36.472	0					32	12	4	0	0	0	0.32741	1	14048	14048		47.916	1.9636	1	482220	+		18745	12057	11821	11876	19024	19024					-0.029591339364287705
IWSKGSKSQ	9	Unmodified	_IWSKGSKSQ_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000489177.1_1_2:112630836-112638411:-|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.8538818359375	3	340.853941	1019.53999	0.67255	0.00022924	-1.1637	-0.00039666	-0.49119	-0.00016742	340.8535895124574	21.056	0.31108	21.056	20.97	21.281	0					18	7	4	0	0	0	0.16806	1	6643	6643		55.084	3.5562	1	2611600			18746	5037	11822	11877	19025	19025					0.03100572300490967
IWSKGSKSQ	9	Unmodified	_IWSKGSKSQ_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000489177.1_1_2:112630836-112638411:-|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.85394287109375	3	340.853941	1019.53999	-0.024522	-8.3586E-06	-0.18266	-6.226E-05	-0.20718	-7.0619E-05	340.85390461147	21	0.21819	21	20.891	21.11	0					11	4	4	0	0	0	0.24334	1	6754	6754		63.426	63.426	1	1876100			18747	5037	11822	11877	19026	19026					0.03100572300490967
IWTGAVVSR	9	Unmodified	_IWTGAVVSR_					0	0	0		ENST00000462826.1_1_7:150499254-150499470:+|nuORF	ENST00000462826.1_1_7:150499254-150499470:+|nuORF	ENST00000462826.1_1_7:150499254-150499470:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1912841796875	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.045	1	54.045	53.545	54.545	0								0	0	0	0.35377	1	18931	18931		24.519	0.99649	1				18748	9752	11823	11878	19027	19027					0.05589180025708629
IWVGPDNR	8	Unmodified	_IWVGPDNR_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7503356933594	2	478.751059	955.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.067	1	36.067	35.567	36.567	0								0	0	0	1.7419	1	12211	12211		35.201	7.3185	1				18749	4315	11824	11879	19028	19028					0.008040339575131839
IWVSATCVMPL	11	Unmodified	_IWVSATCVMPL_					0	0	0			REV__KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant	REV__KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	610.31494140625	2	610.31432	1218.61409	0.15887	9.6959E-05	0.25734	0.00015706	0.41621	0.00025402	610.3145386248787	25.065	0.31874	25.065	24.946	25.265	0					19	9	3	0	0	0	0.78699	1	7492	7492		14.137	3.8719	1	96125	+		18750	20794	11825	11880	19029	19029					0.013524560761652538
IYADNQVMHF	10	Unmodified	_IYADNQVMHF_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	619.286865234375	2	619.287148	1236.55974	1.1395	0.00070569	-1.5019	-0.00093013	-0.36242	-0.00022444	619.2864495592701	41.167	0.20611	41.167	41.079	41.285	0					12	8	2	0	0	0	0.17732	1	16181	16181		82.241	37.863	1	154000			18751	6644	11826	11881	19030	19030					-0.04907419751089037
IYADNQVMHF	10	Unmodified	_IYADNQVMHF_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.2869873046875	2	619.287148	1236.55974	0.80468	0.00049833	-0.92871	-0.00057514	-0.12403	-7.681E-05	619.2865984591062	41.106	0.30935	41.106	41.016	41.326	0					17	7	3	0	0	0	0.0077643	1	16337	16337		154.12	97.685	1	393740			18752	6644	11826	11881	19031	19031					-0.04907419751089037
IYAGGIKSI	9	Unmodified	_IYAGGIKSI_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2740478515625	2	461.273835	920.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.534	1	33.534	33.034	34.034	0								0	0	0	0.080575	1	12842	12842		77.318	17.024	1				18753	3342	11827	11882	19032	19032					0.06967259419900529
IYAGRGNL	8	Unmodified	_IYAGRGNL_					0	0	0		tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.239990234375	2	432.240327	862.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.945	1	19.945	19.445	20.445	0								0	0	0	1.7419	1	5491	5491		35.201	1.6851	1				18754	22714	11828	11883	19033	19033					0.02936648928800878
IYATEAHVF	9	Unmodified	_IYATEAHVF_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.766845703125	2	525.766374	1049.5182	0.09781	5.1425E-05	0.76961	0.00040464	0.86742	0.00045606	525.7668088125323	36.749	0.31556	36.749	36.625	36.941	0					11	8	2	0	0	0	0.068692	1	13873	13873		88.643	28.349	1	256360			18755	1308	11829	11884	19034	19034					-0.004582324481134492
IYATEAHVF	9	Unmodified	_IYATEAHVF_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7665405273438	2	525.766374	1049.5182	1.7707	0.000931	-1.2529	-0.00065871	0.5179	0.00027229	525.765807625611	36.696	0.1796	36.696	36.597	36.777	0					9	5	2	0	0	0	0.032656	1	14309	14309		106.42	53.064	1	307930			18756	1308	11829	11884	19035	19035					-0.004582324481134492
IYAVSKKK	8	Unmodified	_IYAVSKKK_					0	0	0		nc|ENSG00000138068|Q6IMI4-2|SULT6B1;ENSG00000138068|ENST00000535679|SULT6B1	nc|ENSG00000138068|Q6IMI4-2|SULT6B1	nc|ENSG00000138068|Q6IMI4-2|SULT6B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7967834472656	2	468.797478	935.580402	-2.1593	-0.0010123	1.7362	0.00081395	-0.4231	-0.00019835	468.7981953335991	36.449	0.17623	36.449	36.383	36.56	0					15	8	2	0	0	0	0.7126	1	13058	13058		31.955	0	1	52879			18757	4220	11830	11885	19036	19036					0.11003538690897585
IYDCAKKIL	9	Unmodified	_IYDCAKKIL_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.8010864257812	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.234	1	36.234	35.734	36.734	0								0	0	0	0.19749	1	12963	12963		51.335	6.9583	1				18758	1728	11831	11886	19037	19037					0.05908144265072224
IYEDRLAK	8	Unmodified	_IYEDRLAK_					0	0	0			REV__nc|ENSG00000183765|O96017-4|CHEK2	REV__nc|ENSG00000183765|O96017-4|CHEK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5222473144531	3	336.522192	1006.54475	0.53461	0.00017991	-0.12337	-4.1516E-05	0.41124	0.00013839	336.5220937817043	23.041	0.51828	23.041	22.978	23.496	0					31	10	6	0	0	0	0.61938	1	7891	7891		47.657	0	1	2731900	+		18759	16951	11832	11887	19038	19038					0.04173456443231771
IYFHGNEG	8	Unmodified	_IYFHGNEG_					0	0	0		RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant;RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7138366699219	2	468.714142	935.413731	0.56942	0.0002669	-1.2141	-0.00056905	-0.64464	-0.00030215	468.71349246222906	47.251	0.19219	47.251	47.122	47.315	0					11	8	2	0	0	0	0.7126	1	18886	18886		31.955	3.7006	1	43186			18760	7296	11833	11888	19039	19039					-0.05655934204798996
IYGFQFKA	8	Unmodified	_IYGFQFKA_					0	0	0		ART3|p.A238Lfs*10|1|0.23|ENSG00000156219|chr4:76082462-76082462|G/-|frameshift_variant;nc|ENSG00000156219|Q13508-2|ART3;ENST00000513494.5_1_4:76997042-77020397:+|nuORF;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3	ART3|p.A238Lfs*10|1|0.23|ENSG00000156219|chr4:76082462-76082462|G/-|frameshift_variant	ART3|p.A238Lfs*10|1|0.23|ENSG00000156219|chr4:76082462-76082462|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2586975097656	2	487.260728	972.506903	-2.9113	-0.0014185	-1.3457	-0.00065571	-4.257	-0.0020743	487.2600046406584	34.317	0.15559	34.317	34.221	34.376	0					9	5	2	0	0	0	0.39542	1	12113	12113		71.378	23.462	1	145170			18761	232	11834	11889	19040	19040					0.019549902484186532
IYGGIINLQV	10	Unmodified	_IYGGIINLQV_					0	0	0			REV__PEX3|p.S167Rfs*13|1|0.06|ENSG00000034693|chr6:143471426-143471427|-/ATCTGAAA|frameshift_variant	REV__PEX3|p.S167Rfs*13|1|0.06|ENSG00000034693|chr6:143471426-143471427|-/ATCTGAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3184814453125	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.805	1	13.805	13.305	14.305	0								0	0	0	0.4201	1	3293	3293		18.324	5.5127	1		+		18762	12977	11835	11890	19041	19041					0.08222889028456848
IYGSDRIL	8	Unmodified	_IYGSDRIL_					0	0	0		ENSG00000000419|ENST00000371588|DPM1;ENST00000466152.5_1_20:49557422-49575060:-|nuORF	ENSG00000000419|ENST00000371588|DPM1	ENSG00000000419|ENST00000371588|DPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7612609863281	2	468.761092	935.507631	-0.68538	-0.00032128	0.36479	0.000171	-0.3206	-0.00015028	468.7611501465495	29.579	0.20818	29.579	29.458	29.666	0					12	5	3	0	0	0	0.59411	1	9959	9959		50.025	2.1089	1	541560			18763	920	11836	11891	19042	19042					0.03729784897461741
IYGSGHYITF	10	Unmodified	_IYGSGHYITF_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.2857055664062	2	579.284931	1156.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.474	1	42.474	41.974	42.974	0								0	0	0	0.41253	1	16086	16086		26.693	2.1737	1				18764	11716	11837	11892	19043	19043					-0.016705609023802026
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7138671875	2	468.714142	935.413731	-0.43394	-0.00020339	-0.28501	-0.00013359	-0.71895	-0.00033698	468.7139885900059	28.948	0.31888	28.948	28.874	29.192	0					22	11	3	0	0	0	0.41952	1	9092	9092		68.485	23.954	1	323000			18765	4374;4202	11838	11893	19044	19044					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7138671875	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.32	1	31.32	30.82	31.82	0								0	0	0	1.7419	1	11389	11389		26.796	1.3459	1				18766	4374;4202	11838	11893	19045	19045					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7137756347656	2	468.714142	935.413731	-0.63522	-0.00029774	1.0962	0.00051382	0.46101	0.00021608	468.7141409643763	29.204	1.0538	29.204	29.073	30.127	0					65	26	6	0	0	0	0.25001	1	10408	10408		101.21	17.924	1	1805700			18767	4374;4202	11838	11893	19046	19046					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7138671875	2	468.714142	935.413731	-1.139	-0.00053386	0.42159	0.0001976	-0.7174	-0.00033625	468.71429476030147	28.963	1.8205	28.963	28.851	30.672	0					162	68	4	0	0	0	0.27084	4	9370	9370;9513;9665;10012		92.191	27.969	1	6569400			18768	4374;4202	11838	11893	19047;19048;19049;19050	19047					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.71392822265625	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.649	1	31.649	31.149	32.149	0								0	0	0	1.7419	1	10505	10505		37.028	0	1				18769	4374;4202	11838	11893	19051	19051					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7137145996094	2	468.714142	935.413731	0.63074	0.00029564	-1.2512	-0.00058646	-0.62047	-0.00029082	468.71359022719054	41.529	0.51081	41.529	41.411	41.921	0					33	21	2	0	0	0	0.66238	1	16340	16340		39.021	1.993	1	47308			18770	4374;4202	11838	11893	19052	19052					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.71343994140625	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.807	1	42.807	42.307	43.307	0								0	0	0	1.7419	1	16789	16789		52.299	11.727	1				18771	4374;4202	11838	11893	19053	19053					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7137451171875	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.178	1	43.178	42.678	43.678	0								0	0	0	1.7419	1	16911	16911		35.201	1.0282	1				18772	4374;4202	11838	11893	19054	19054					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7140808105469	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.641	1	44.641	44.141	45.141	0								0	0	0	1.7419	1	17361	17361		35.201	3.2459	1				18773	4374;4202	11838	11893	19055	19055					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7140808105469	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.62	1	47.62	47.12	48.12	0								0	0	0	1.7419	1	18156	18156		50.025	14.824	1				18774	4374;4202	11838	11893	19056	19056					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.71368408203125	2	468.714142	935.413731	-0.6851	-0.00032112	-0.043554	-2.0414E-05	-0.72865	-0.00034153	468.7140794811419	29.017	2.0789	29.017	28.88	30.958	0					107	54	4	0	0	0	0.22195	4	9697	9697;9867;10226;10494		128.82	41.881	1	4456300			18775	4374;4202	11838	11893	19057;19058;19059;19060	19057					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7140197753906	2	468.714142	935.413731	0.56598	0.00026528	-0.80785	-0.00037865	-0.24187	-0.00011337	468.7138731626829	40.709	1.2776	40.709	40.134	41.411	0					39	27	2	0	0	0	0.75243	1	15966	15966		26.796	26.796	1	76384			18776	4374;4202	11838	11893	19061	19061					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7142028808594	2	468.714142	935.413731	0.56686	0.0002657	-1.2491	-0.00058545	-0.6822	-0.00031975	468.71361450918613	42.501	1.0339	42.501	41.816	42.85	0					38	28	2	0	0	0	0.55361	1	16724	16724		54.765	12.29	1	52163			18777	4374;4202	11838	11893	19062	19062					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7140197753906	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.787	1	46.787	46.287	47.287	0								0	0	0	1.7419	1	18710	18710		42.474	5.446	1				18778	4374;4202	11838	11893	19063	19063					-0.056559342048103645
IYGSSHSW	8	Unmodified	_IYGSSHSW_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX1|p.S186N|1|0.29|ENSG00000137857|chr15:45135535-45135535|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7142333984375	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.901	1	48.901	48.401	49.401	0								0	0	0	1.7419	1	19400	19400		35.201	6.9464	1				18779	4374;4202	11838	11893	19064	19064					-0.056559342048103645
IYGSYQPTY	9	Unmodified	_IYGSYQPTY_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.2574462890625	2	546.25584	1090.49713	1.8614	0.0010168	1.7684	0.00096598	3.6298	0.0019828	546.2570896879688	41.661	0.18901	41.661	41.601	41.79	0					16	9	2	0	0	0	0.16524	1	15822	15822		65.803	2.4969	1	120340			18780	4990	11839	11894	19065	19065					-0.04450242547613925
IYGVFDEKK	9	Unmodified	_IYGVFDEKK_					0	0	0		nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7952880859375	2	549.795132	1097.57571	0.53056	0.0002917	-0.50252	-0.00027628	0.028046	1.542E-05	549.7949774949972	36.862	0.23468	36.862	36.74	36.975	0					10	6	2	0	0	0	0.19605	1	13941	13941		65.803	14.468	1	198390			18781	4931	11840	11895	19066	19066					0.03082609757461796
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2679443359375	2	545.266207	1088.51786	1.955	0.001066	-0.33166	-0.00018084	1.6233	0.00088514	545.2662242693815	48.001	0.1649	48.001	47.917	48.082	0					11	8	2	0	0	0	0.15163	1	19094	19094		67.494	11.989	1	91656			18782	2872	11841	11896	19067	19067					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.26708984375	2	545.266207	1088.51786	3.7237	0.0020304	-2.8735	-0.0015668	0.85026	0.00046362	545.2646154511548	47.996	0.12455	47.996	47.95	48.074	0					11	6	2	0	0	0	0.03984	1	19100	19100		99.375	33.572	1	101290			18783	2872	11841	11896	19068	19068					-0.022856521679386788
IYHHTGNNTF	10	Unmodified	_IYHHTGNNTF_					0	0	0		ENAH-TMEM63A|1|fusion;ENAH|p.Q196Dfs*57|1|0.22|ENSG00000154380|chr1:225519414-225519415|-/TC|frameshift_variant;nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7|ENAH	ENAH-TMEM63A|1|fusion	ENAH-TMEM63A|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.2811279296875	2	602.280712	1202.54687	0.1443	8.6908E-05	0.38972	0.00023472	0.53402	0.00032163	602.2809331380364	20.949	0.16022	20.949	20.868	21.028	0					8	4	2	0	0	0	0.63224	1	5698	5698		30.318	6.115	1	123640			18784	913	11842	11897	19069	19069					-0.04630114818974107
IYHLSCSN	8	Unmodified	_IYHLSCSN_					0	0	0			REV__ENSG00000178773|ENST00000319518|CPNE7;REV__ENSG00000196353|ENST00000429747|CPNE4	REV__ENSG00000178773|ENST00000319518|CPNE7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.71484375	2	468.715827	935.417102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.45	1	31.45	30.95	31.95	0								0	0	0	1.7419	1	10830	10830		45.952	7.1458	1		+		18785	16745;17244	11843	11898	19070	19070					-0.05319007422451705
IYHPNVDKL	9	Unmodified	_IYHPNVDKL_					0	0	0		nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N	nc|ENSG00000276380|Q5JXB2|UBE2NL	nc|ENSG00000276380|Q5JXB2|UBE2NL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8013916015625	2	549.800749	1097.58694	0.56932	0.00031301	0.27117	0.00014909	0.84049	0.0004621	549.8010568314694	29.416	0.30804	29.416	29.258	29.566	0					10	6	3	0	0	0	0.13267	1	10785	10785		71.877	13.096	1	208800			18786	11805	11844	11899	19071	19071					0.04205431851596586
IYHPQTDQ	8	Unmodified	_IYHPQTDQ_					0	0	0			REV__DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	REV__DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2367858886719	2	501.237981	1000.46141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.636	1	28.636	28.136	29.136	0								0	0	0	1.7419	1	8960	8960		35.618	5.7767	1		+		18787	12753	11845	11900	19072	19072					-0.03880280004625547
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.766357421875	2	494.766178	987.517802	-0.023065	-1.1412E-05	-0.51872	-0.00025664	-0.54178	-0.00026806	494.76588131333335	38.244	0.23045	38.244	38.148	38.379	0					19	13	2	0	0	0	0.076399	1	12471	12471		85.909	22.931	1	112340			18788	2308	11846	11901	19073	19073					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7655029296875	2	494.766178	987.517802	0.74947	0.00037081	-1.1752	-0.00058147	-0.42576	-0.00021065	494.76540132647006	38.549	0.51844	38.549	38.333	38.851	0					54	19	5	0	0	0	0.038834	1	14641	14641		100.36	25.844	1	983230			18789	2308	11846	11901	19074	19074					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7668151855469	2	494.766178	987.517802	-0.43191	-0.0002137	0.47675	0.00023588	0.044835	2.2183E-05	494.7662667800687	38.564	0.15582	38.564	38.455	38.61	0					8	5	2	0	0	0	0.076399	1	14651	14651		85.909	18.582	1	116090			18790	2308	11846	11901	19075	19075					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.76617431640625	2	494.766178	987.517802	0.68767	0.00034024	-1.4573	-0.00072101	-0.7696	-0.00038077	494.7657123164531	38.536	0.6273	38.536	38.333	38.96	0					76	22	5	0	0	0	0.038834	1	15102	15102		100.36	37.382	1	2243100			18791	2308	11846	11901	19076	19076					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7671203613281	2	494.766178	987.517802	0.064892	3.2106E-05	0.00097414	4.8197E-07	0.065866	3.2588E-05	494.76615507956416	38.281	0.2757	38.281	38.196	38.471	0					21	13	2	0	0	0	0.12946	1	13682	13682		72.62	17.855	1	332690			18792	2308	11846	11901	19077	19077					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7660217285156	2	494.766178	987.517802	0.91813	0.00045426	-1.7009	-0.00084155	-0.78278	-0.00038729	494.76540379900723	38.486	0.82539	38.486	38.156	38.981	0					45	17	5	0	0	0	0.023548	1	15103	15103		116.12	53.143	1	3346000			18793	2308	11846	11901	19078	19078					0.023543926227148404
IYIGAGICAG	10	Unmodified	_IYIGAGICAG_					0	0	0		ENSG00000135077|ENST00000307851|HAVCR2	ENSG00000135077|ENST00000307851|HAVCR2	ENSG00000135077|ENST00000307851|HAVCR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2434387207031	2	469.244221	936.473888	2.576	0.0012088	-3.5521	-0.0016668	-0.97613	-0.00045804	469.2427544466203	30.55	0.15397	30.55	30.458	30.612	0					9	3	3	0	0	0	0.21242	1	11316	11316		77.944	8.3162	1	572870			18794	3962	11847	11902	19079	19079					0.0031104013406775266
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2647705078125	2	532.263999	1062.51345	0.36882	0.00019631	0.52599	0.00027997	0.89482	0.00047628	532.264196153944	36.343	0.29961	36.343	36.246	36.546	0					35	15	3	0	0	0	0.26904	1	11900	11900		53.351	2.016	1	417600			18795	5246	11848	11903	19080	19080					-0.015311165908542534
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2638549804688	2	532.263999	1062.51345	0.12461	6.6326E-05	0.67223	0.0003578	0.79684	0.00042413	532.2642756846926	36.591	0.49018	36.591	36.485	36.975	0					32	13	3	0	0	0	0.12239	1	13802	13802		74.255	13.283	1	2396200			18796	5246	11848	11903	19081	19081					-0.015311165908542534
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2645263671875	2	532.263999	1062.51345	1.7158	0.00091326	-0.7582	-0.00040356	0.9576	0.0005097	532.2633741356839	36.57	1.0799	36.57	36.455	37.535	0					82	32	5	0	0	0	0.0061615	2	14239	14239;14407		153.04	46.621	1	12460000			18797	5246	11848	11903	19082;19083	19082					-0.015311165908542534
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2645263671875	2	532.263999	1062.51345	1.1547	0.0006146	-0.11204	-5.9635E-05	1.0426	0.00055496	532.2638646154708	36.371	0.37362	36.371	36.295	36.669	0					48	17	4	0	0	0	0.22377	1	13001	13001		58.782	5.4305	1	1619400			18798	5246	11848	11903	19084	19084					-0.015311165908542534
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2644653320312	2	532.263999	1062.51345	1.7392	0.00092573	-1.2283	-0.00065377	0.51095	0.00027196	532.2631204360961	36.521	0.95488	36.521	36.411	37.366	0					56	19	5	0	0	0	0.048471	1	14186	14186		95.815	23.938	1	14801000			18799	5246	11848	11903	19085	19085					-0.015311165908542534
IYIGRDVD	8	Unmodified	_IYIGRDVD_					0	0	0			REV__TBL1XR1|p.C434Y|1|0.23|ENSG00000177565|chr3:177033086-177033086|C/T|missense_variant	REV__TBL1XR1|p.C434Y|1|0.23|ENSG00000177565|chr3:177033086-177033086|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.25274658203125	2	475.750724	949.486896	0.62393	0.00029683	-0.89418	-0.0004254	-0.27025	-0.00012857	475.7502657488735	43.107	0.24596	43.107	43.023	43.269	0					21	12	2	0	0	0	0.59411	1	16876	16876		50.025	4.0726	1	383120	+		18800	21626	11849	11904	19086	19086					0.010131945178045498
IYIINVHSM	9	Unmodified	_IYIINVHSM_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2924194335938	2	545.291702	1088.56885	3.7297	0.0020338	-2.2598	-0.0012323	1.4698	0.0008015	545.290699124737	43.442	0.27772	43.442	43.347	43.625	0					18	9	3	0	0	0	0.015496	1	17375	17375		113.41	31.107	1	263340			18801	2345	11850	11905	19087	19087					0.0281097360525564
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.2375183105469	3	385.237504	1152.69068	0.032804	1.2637E-05	-0.23238	-8.9521E-05	-0.19957	-7.6884E-05	385.2374746265366	34.443	0.40812	34.443	34.323	34.731	0					23	10	4	0	0	0	0.28897	1	12825	12825		51.193	18.442	1	461090			18802	2242	11851	11906	19088	19088					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.3529052734375	2	577.352617	1152.69068	-0.072801	-4.2032E-05	0.73274	0.00042305	0.65994	0.00038102	577.3530735371291	34.451	0.48824	34.451	34.323	34.811	0					19	12	3	0	0	0	0.0011548	1	12826	12826		153.04	48.289	1	572330			18803	2242	11851	11906	19089	19089					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.5722351074219	3	385.237504	1152.69068	-1.1732	-0.00045196	1.1545	0.00044476	-0.018696	-7.2025E-06	385.2378787326835	34.288	0.16423	34.288	34.2	34.365	0					18	7	3	0	0	0	0.4966	1	11536	11536		32.812	4.9302	1	262140			18804	2242	11851	11906	19090	19090					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.23760986328125	3	385.237504	1152.69068	0.18958	7.3033E-05	-0.19565	-7.5373E-05	-0.0060742	-2.34E-06	385.2373759482737	34.461	0.59743	34.461	34.336	34.933	0					38	16	4	0	0	0	0.3269	1	13257	13257		47.96	14.038	1	2064500			18805	2242	11851	11906	19091	19091					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.352783203125	2	577.352617	1152.69068	-0.39071	-0.00022558	1.3213	0.00076283	0.93055	0.00053726	577.353029221278	34.448	0.21023	34.448	34.358	34.568	0					12	5	3	0	0	0	0.24169	1	13268	13268		49.536	10.283	1	258350			18806	2242	11851	11906	19092	19092					0.12044338959276502
IYINSRSVF	9	Unmodified	_IYINSRSVF_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5;CAPN5|p.S449T|1|0.39|ENSG00000149260|chr11:77120767-77120767|T/A|missense_variant;ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8004150390625	2	549.800749	1097.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.209	1	40.209	39.709	40.709	0								0	0	0	0.11736	1	15325	15325		67.494	8.7117	1				18807	4870	11852	11907	19093	19093					0.042054318516193234
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		nc|ENSG00000100591|O95433-2|AHSA1;ENSG00000100591|ENST00000216479|AHSA1	nc|ENSG00000100591|O95433-2|AHSA1	nc|ENSG00000100591|O95433-2|AHSA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.8363647460938	2	607.836997	1213.65944	2.945	0.0017901	-4.0089	-0.0024368	-1.0639	-0.00064668	607.8345949521924	45.125	0.095284	45.125	45.1	45.196	0					8	4	2	0	0	0	0.43008	1	18082	18082		52.937	6.9847	1	61262			18808	2045	11853	11908	19094	19094					0.061157211345062024
IYITHNPRT	9	Unmodified	_IYITHNPRT_					0	0	0			REV__ENST00000599570.5_1_19:41257313-41263396:+|nuORF	REV__ENST00000599570.5_1_19:41257313-41263396:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.3057250976562	2	557.803823	1113.59309	1.1231	0.00062648	-2.5033	-0.0013964	-1.3802	-0.00076987	558.3038547182456	45.292	0.12219	45.292	45.247	45.37	0					9	7	2	0	0	0	0.5741	1	15442	15442		11.511	0	1	36102	+		18809	13260	11854	11909	19095	19095					0.04083950083122545
IYKAPSENW	9	Unmodified	_IYKAPSENW_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2765502929688	2	554.277106	1106.53966	1.8203	0.001009	-2.5705	-0.0014248	-0.75018	-0.00041581	554.2755552178123	33.191	0.41422	33.191	33.135	33.549	0					13	8	3	0	0	0	0.1424	1	12608	12608		69.628	6.3214	1	291710			18810	3676	11855	11910	19096	19096					-0.009348474193984657
IYKCVNTTL	9	Carbamidomethyl (C)	_IYKC(Carbamidomethyl (C))VNTTL_	IYKC(1)VNTTL		IYKC(80)VNTTL		0	1	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.2950439453125	2	556.294442	1110.57433	1.3023	0.00072447	-0.3662	-0.00020371	0.93612	0.00052076	556.2942370070205	30.059	0.11623	30.059	29.993	30.109	0					7	4	2	0	0	0	0.095583	1	9547	9547		80.455	21.673	1	100940			18811	3710	11856	11911	19097	19097	160				0.023466523970455455
IYKCVNTTL	9	Carbamidomethyl (C)	_IYKC(Carbamidomethyl (C))VNTTL_	IYKC(1)VNTTL		IYKC(150)VNTTL		0	1	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.2947998046875	2	556.294442	1110.57433	0.56881	0.00031643	-0.14168	-7.8815E-05	0.42714	0.00023761	556.2944852321086	30.342	0.21172	30.342	30.234	30.445	0					14	5	4	0	0	0	0.0067848	1	10928	10928		150.36	65.201	1	447900			18812	3710	11856	11911	19098	19098	160				0.023466523970455455
IYKDNRNLF	9	Unmodified	_IYKDNRNLF_					0	0	0		ENST00000487413.1_1_3:50453473-50541058:-|nuORF;nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2	ENST00000487413.1_1_3:50453473-50541058:-|nuORF	ENST00000487413.1_1_3:50453473-50541058:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.880126953125	3	394.880379	1181.61931	0.90009	0.00035543	-1.2311	-0.00048614	-0.33102	-0.00013071	394.8799297696173	29.694	0.37399	29.694	29.57	29.944	0					19	9	3	0	0	0	0.25716	1	10627	10627		54.776	18.33	1	398870			18813	1005	11857	11912	19099	19099					0.03576219254614443
IYKDNRNLF	9	Unmodified	_IYKDNRNLF_					0	0	0		ENST00000487413.1_1_3:50453473-50541058:-|nuORF;nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2	ENST00000487413.1_1_3:50453473-50541058:-|nuORF	ENST00000487413.1_1_3:50453473-50541058:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.8802185058594	3	394.880379	1181.61931	0.41579	0.00016419	-1.028	-0.00040596	-0.61226	-0.00024177	394.8800747087428	29.64	0.61366	29.64	29.485	30.099	0					27	12	4	0	0	0	0.33044	1	10873	10873		47.657	4.7931	1	758040			18814	1005	11857	11912	19100	19100					0.03576219254614443
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2802124023438	2	537.279315	1072.54408	2.1054	0.0011312	-0.6856	-0.00036836	1.4198	0.00076285	537.2787971178388	36.897	0.23077	36.897	36.784	37.015	0					10	6	2	0	0	0	0.24095	1	13932	13932		56.721	17.915	1	88610			18815	4670	11858	11913	19101	19101					0.010706170035291507
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2796630859375	2	537.279315	1072.54408	1.8762	0.0010081	-0.43247	-0.00023236	1.4437	0.0007757	537.27854269195	36.834	0.79311	36.834	36.705	37.498	0					55	24	5	0	0	0	0.0049871	1	14342	14342		158.07	89.288	1	8187900			18816	4670	11858	11913	19102	19102					0.010706170035291507
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.28076171875	2	537.279315	1072.54408	1.0312	0.00055404	0.28135	0.00015116	1.3125	0.0007052	537.2793054258019	36.629	0.44049	36.629	36.516	36.957	0					51	20	4	0	0	0	0.30841	1	13087	13087		49.536	1.6204	1	925390			18817	4670	11858	11913	19103	19103					0.010706170035291507
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2796020507812	2	537.279315	1072.54408	1.9761	0.0010617	-0.85215	-0.00045785	1.124	0.00060389	537.2785032965277	36.776	1.0437	36.776	36.613	37.657	0					45	21	7	0	0	0	0.00324	2	14304	14304;14590		167.23	104.25	1	7964100			18818	4670	11858	11913	19104;19105	19104					0.010706170035291507
IYKKFSLEL	9	Unmodified	_IYKKFSLEL_					0	0	0			REV__ENST00000296220.5_1_3:125248682-125248751:-|nuORF	REV__ENST00000296220.5_1_3:125248682-125248751:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.8932189941406	3	380.893625	1139.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.868	1	36.868	36.368	37.368	0								0	0	0	0.24724	1	14366	14366		44.117	11.304	1		+		18819	18178	11859	11914	19106	19106					0.09480346205350543
IYKMAYMKK	9	Unmodified	_IYKMAYMKK_					0	0	0			REV__STK32A|p.M54I|1|0.3|ENSG00000169302|chr5:147279300-147279300|G/A|missense_variant	REV__STK32A|p.M54I|1|0.3|ENSG00000169302|chr5:147279300-147279300|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.5487365722656	3	392.548696	1174.62426	-0.15873	-6.2308E-05	0.35264	0.00013843	0.19391	7.6121E-05	392.5487795711783	30.092	0.17868	30.092	30.018	30.197	0					7	4	2	0	0	0	0.53083	1	10225	10225		29.15	3.6994	1	55977	+		18820	21612	11860	11915	19107	19107					0.04393063801353492
IYKNVLNA	8	Unmodified	_IYKNVLNA_					0	0	0			REV__nc|ENSG00000070159|P26045-3|PTPN3	REV__nc|ENSG00000070159|P26045-3|PTPN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.77154541015625	2	467.77146	933.528367	0.59985	0.00028059	-0.94354	-0.00044136	-0.34368	-0.00016077	467.7709509927802	37.844	0.39709	37.844	37.642	38.039	0					20	8	3	0	0	0	0.32408	1	14794	14794		79.939	14.136	1	1637800	+		18821	13169	11861	11916	19108	19108					0.058943752771256186
IYKSIMEQF	9	Unmodified	_IYKSIMEQF_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.7968139648438	2	579.796817	1157.57908	-0.042225	-2.4482E-05	0.22829	0.00013236	0.18606	0.00010788	579.7970068463662	43.61	0.18999	43.61	43.523	43.713	0					16	11	2	0	0	0	0.34452	1	16422	16422		46.457	4.0606	1	79206			18822	3537	11862	11917	19109	19109					0.006595365398197828
IYKSIMEQF	9	Unmodified	_IYKSIMEQF_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.7974243164062	2	579.796817	1157.57908	1.5813	0.00091685	-0.7335	-0.00042528	0.84784	0.00049157	580.2981097311036	43.582	0.17551	43.582	43.499	43.674	0					13	9	2	0	0	0	0.067603	1	17020	17020		89.029	22.6	1	81072			18823	3537	11862	11917	19110	19110					0.006595365398197828
IYKSMVQKF	9	Unmodified	_IYKSMVQKF_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.87921142578125	3	381.87921	1142.6158	0.62381	0.00023822	-0.86805	-0.00033149	-0.24424	-9.3272E-05	381.8789544591055	29	0.31367	29	28.893	29.207	0					16	6	3	0	0	0	0.13726	1	10588	10588		70.816	10.698	1	1341100			18824	5939	11863	11918	19111	19111					0.05019833156393361
IYKTSILVF	9	Unmodified	_IYKTSILVF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.8280029296875	2	542.326068	1082.63758	2.0369	0.0011047	-0.88074	-0.00047765	1.1562	0.00062703	542.3255707911038	48.835	0.1973	48.835	48.732	48.929	0					14	10	2	0	0	0	0.2873	2	19359	19359;19377		51.335	8.2236	1	44270			18825	3397	11864	11919	19112;19113	19112					0.09956961176635559
IYKVNSNGL	9	Unmodified	_IYKVNSNGL_					0	0	0			REV__tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	REV__tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5222473144531	3	336.522192	1006.54475	0.2411	8.1134E-05	-0.32751	-0.00011022	-0.086416	-2.9081E-05	336.5220729407501	22.81	0.46999	22.81	22.713	23.183	0					44	15	5	0	0	0	0.37197	1	6496	6496		51.193	15.574	1	4919500	+		18826	21677	11865	11920	19114	19114					0.04173456443231771
IYLAGTSTI	9	Unmodified	_IYLAGTSTI_					0	0	0			REV__nc|ENSG00000171587|O60469-2|DSCAM	REV__nc|ENSG00000171587|O60469-2|DSCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7630310058594	2	469.7633	937.512048	0.01177	5.529E-06	-0.58237	-0.00027358	-0.5706	-0.00026805	469.7628973445382	31.65	0.22369	31.65	31.558	31.782	0					20	10	3	0	0	0	0.5392	1	10173	10173		28.254	0.37203	1	102160	+		18827	12741	11866	11921	19115	19115					0.0407924932038668
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.2373352050781	3	374.237392	1119.69035	0.79184	0.00029634	-1.2543	-0.00046942	-0.4625	-0.00017309	374.2370203814879	36.745	0.32421	36.745	36.676	37	0					22	10	3	0	0	0	0.28897	1	14337	14337		51.193	16.041	1	930460			18828	6707	11867	11922	19116	19116					0.13528919239411152
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8526000976562	2	560.85245	1119.69035	1.8159	0.0010185	-1.0864	-0.00060929	0.72955	0.00040917	560.8516131682698	36.745	0.19305	36.745	36.676	36.869	0					13	6	3	0	0	0	0.076532	1	14341	14341		69.628	10.846	1	307040			18829	6707	11867	11922	19117	19117					0.13528919239411152
IYLFFVSY	8	Unmodified	_IYLFFVSY_					0	0	0		ENST00000399410.7_1_16:16236589-16236823:+|nuORF	ENST00000399410.7_1_16:16236589-16236823:+|nuORF	ENST00000399410.7_1_16:16236589-16236823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.28076171875	2	526.278586	1050.54262	0.46534	0.0002449	1.7542	0.00092318	2.2195	0.0011681	526.2796529159596	35.825	0.19979	35.825	35.712	35.912	0					12	9	2	0	0	0	0.67475	1	12132	12132		37.028	1.4102	1	44276			18830	9237	11868	11923	19118	19118					0.01937027705434957
IYLGMYLY	8	Oxidation (M)	_IYLGM(Oxidation (M))YLY_		IYLGM(1)YLY		IYLGM(55)YLY	0	0	1			REV__ENST00000301067.11_1_12:49414036-49414432:-|nuORF	REV__ENST00000301067.11_1_12:49414036-49414432:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2638549804688	2	526.262079	1050.50961	1.6798	0.00088402	2.612	0.0013746	4.2918	0.0022586	526.2635436850463	22.627	0.14748	22.627	22.575	22.723	0					6	3	2	0	0	0	0.55232	1	6782	6782		54.895	17.083	1	132060	+		18831	18203	11869	11924	19119	19119		683			-0.013629224089299896
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		CD53|p.F56Lfs*10|1|0.16|ENSG00000143119|chr1:110892447-110892447|T/-|frameshift_variant;ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	CD53|p.F56Lfs*10|1|0.16|ENSG00000143119|chr1:110892447-110892447|T/-|frameshift_variant	CD53|p.F56Lfs*10|1|0.16|ENSG00000143119|chr1:110892447-110892447|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8200073242188	2	573.818941	1145.62333	3.3513	0.001923	-2.4121	-0.0013841	0.93917	0.00053891	573.8173920586191	47.952	0.25253	47.952	47.859	48.112	0					24	13	3	0	0	0	0.087861	1	19083	19083		76.847	4.2267	1	135890			18832	430	11870	11925	19120	19120					0.05634308748312833
IYLMSYISN	9	Unmodified	_IYLMSYISN_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.2758178710938	2	552.275718	1102.53688	-1.2848	-0.00070957	1.6612	0.00091742	0.37636	0.00020785	552.2764064770377	19.739	0.091185	19.739	19.689	19.781	0					4	2	2	0	0	0	0.13519	1	5425	5425		71.296	11.365	1	127710			18833	10	11871	11926	19121	19121					-0.010284388685477097
IYLMTVQGF	9	Oxidation (M)	_IYLM(Oxidation (M))TVQGF_		IYLM(1)TVQGF		IYLM(46)TVQGF	0	0	1			REV__ENSG00000170967|ENST00000302259|DDI1	REV__ENSG00000170967|ENST00000302259|DDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.1891784667969	3	363.187932	1086.54197	3.1286	0.0011363	0.16773	6.0917E-05	3.2963	0.0011972	363.1880262015485	19.665	0.77066	19.665	19.557	20.328	0					20	15	2	0	0	0	0.35021	1	6130	6130		45.972	8.8131	1	2806500	+		18834	16392	11872	11927	19122	19122		624			0.0021586499406112125
IYLNGLEEGP	10	Unmodified	_IYLNGLEEGP_					0	0	0		tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7826538085938	2	552.782222	1103.54989	0.062107	3.4332E-05	0.62533	0.00034567	0.68744	0.00038001	552.7822457560034	35.279	0.11652	35.279	35.202	35.318	0					5	3	2	0	0	0	0.30737	1	13652	13652		66.429	2.222	1	102560			18835	22571	11873	11928	19123	19123					0.002257155152165069
IYLRSGDL	8	Unmodified	_IYLRSGDL_					0	0	0			REV__KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant	REV__KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.76129150390625	2	468.761092	935.507631	-0.68302	-0.00032017	0.78815	0.00036946	0.10513	4.9281E-05	468.76156882062696	38.159	0.24129	38.159	38.066	38.307	0					28	12	3	0	0	0	0.60719	1	13636	13636		47.916	1.9636	1	154470	+		18836	16272	11874	11929	19124	19124					0.03729784897461741
IYLSSTPR	8	Unmodified	_IYLSSTPR_					0	0	0		ENST00000486187.5_1_10:43078026-43078305:-|nuORF	ENST00000486187.5_1_10:43078026-43078305:-|nuORF	ENST00000486187.5_1_10:43078026-43078305:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7612609863281	2	468.761092	935.507631	-2.158	-0.0010116	2.8478	0.0013349	0.68983	0.00032336	468.7622439833792	38.174	0.20677	38.174	38.113	38.32	0					13	10	2	0	0	0	0.63077	1	13655	13655		44.117	3.5442	1	37228			18837	10017	11875	11930	19125	19125					0.037297848974731096
IYLTVQVQ	8	Unmodified	_IYLTVQVQ_					0	0	0			REV__ENST00000483260.5_1_1:110943891-110943993:-|nuORF	REV__ENST00000483260.5_1_1:110943891-110943993:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.277099609375	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.649	1	11.649	11.149	12.149	0								0	0	0	1.7419	1	2287	2287		44.117	1.7207	1		+		18838	19622	11876	11931	19126	19126					0.06091242074330694
IYLVIDLFP	9	Unmodified	_IYLVIDLFP_					0	0	0			REV__ENSG00000117528|ENST00000370214|ABCD3	REV__ENSG00000117528|ENST00000370214|ABCD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.88299560546875	3	364.882838	1091.62668	-0.12204	-4.4531E-05	-0.029864	-1.0897E-05	-0.15191	-5.5428E-05	364.8830106691526	31.377	0.26234	31.377	31.275	31.537	0					8	5	2	0	0	0	0.54267	1	11735	11735		27.882	0	1	105570	+		18839	14200	11877	11932	19127	19127					0.08453558802352745
IYLVSVDE	8	Unmodified	_IYLVSVDE_					0	0	0			REV__ENSG00000138002|ENST00000260570|IFT172	REV__ENSG00000138002|ENST00000260570|IFT172	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2484130859375	2	469.247483	936.480414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.486	1	30.486	29.986	30.986	0								0	0	0	1.7419	1	10388	10388		35.201	6.9464	1		+		18840	14951	11878	11933	19128	19128					0.009632565664333015
IYLWSLSL	8	Unmodified	_IYLWSLSL_					0	0	0			REV__GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant	REV__GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.781982421875	2	497.784036	993.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.544	1	29.544	29.044	30.044	0								0	0	0	1.7419	1	9952	9952		60.294	25.093	1		+		18841	14566	11879	11934	19129	19129					0.05648430079725131
IYLYHRSF	8	Unmodified	_IYLYHRSF_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.795166015625	2	549.790184	1097.56581	1.7137	0.00094218	3.8339	0.0021078	5.5476	0.00305	549.7921627822926	40.033	0.2328	40.033	39.886	40.118	0					15	8	3	0	0	0	0.34985	1	15765	15765		76.847	15.875	1	82122			18842	5035	11880	11935	19130	19130					0.02093466542760325
IYNASATSVF	10	Unmodified	_IYNASATSVF_					0	0	0		PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7687377929688	2	536.769114	1071.52368	0.20336	0.00010916	-0.026718	-1.4342E-05	0.17664	9.4817E-05	536.7688478978328	43.839	0.096817	43.839	43.809	43.905	0					8	5	2	0	0	0	0.36476	1	16496	16496		60.118	1.3363	1	29094			18843	3525	11881	11936	19131	19131					-0.00922553656278069
IYNASATSVF	10	Unmodified	_IYNASATSVF_					0	0	0		PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2716064453125	2	536.769114	1071.52368	1.8529	0.00099457	-1.2879	-0.00069131	0.56499	0.00030327	536.7684446784791	43.848	0.17524	43.848	43.758	43.933	0					15	8	2	0	0	0	0.28036	1	17112	17112		69.628	9.3337	1	95575			18844	3525	11881	11936	19132	19132					-0.00922553656278069
IYNASATSVF	10	Unmodified	_IYNASATSVF_					0	0	0		PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7693481445312	2	536.769114	1071.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.786	1	43.786	43.286	44.286	0								0	0	0	0.081515	1	17536	17536		83.647	22.675	1				18845	3525	11881	11936	19133	19133					-0.00922553656278069
IYNASATSVF	10	Unmodified	_IYNASATSVF_					0	0	0		PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7689819335938	2	536.769114	1071.52368	3.3455	0.0017958	-3.0556	-0.0016401	0.28993	0.00015563	536.7674650193072	43.797	0.32118	43.797	43.689	44.01	0					18	10	3	0	0	0	0.38194	1	17517	17517		58.23	2.7257	1	224690			18846	3525	11881	11936	19134	19134					-0.00922553656278069
IYNEDKVSFL	10	Unmodified	_IYNEDKVSFL_					0	0	0			REV__ENSG00000204361|ENST00000389586|NXPE2	REV__ENSG00000204361|ENST00000389586|NXPE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.8814392089844	3	409.880044	1226.6183	0.81787	0.00033523	2.3941	0.00098128	3.2119	0.0013165	409.88124125953397	38.973	0.30159	38.973	38.778	39.079	0					12	6	3	0	0	0	0.59277	1	15378	15378		35.152	4.8343	1	161660	+		18847	17479	11882	11937	19135	19135					0.014059600950531603
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.78192138671875	2	497.782025	993.549496	0.18843	9.3797E-05	-0.074808	-3.7238E-05	0.11362	5.6559E-05	497.78187208089986	29.471	0.17253	29.471	29.388	29.561	0					10	5	3	0	0	0	0.035062	1	9310	9310		104.06	37.628	1	183250			18848	1411	11883	11938	19136	19136					0.052463405860066814
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7820739746094	2	497.782025	993.549496	0.6992	0.00034805	-2.4641	-0.0012266	-1.7649	-0.00087853	497.7814891974515	29.74	0.32811	29.74	29.655	29.983	0					25	8	4	0	0	0	0.035062	1	10646	10646		104.06	37.628	1	1153900			18849	1411	11883	11938	19137	19137					0.052463405860066814
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7821350097656	2	497.782025	993.549496	-1.1208	-0.00055792	-2.0613	-0.0010261	-3.1821	-0.001584	497.7826527115806	29.515	0.35425	29.515	29.377	29.731	0					27	13	3	0	0	0	0.02953	1	9607	9607		109.48	30.027	1	344590			18850	1411	11883	11938	19138	19138					0.052463405860066814
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7819519042969	2	497.782025	993.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.733	1	29.733	29.233	30.233	0								0	0	0	0.0019965	1	11041	11041		120.87	33.114	1				18851	1411	11883	11938	19139	19139					0.052463405860066814
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.78173828125	2	497.782025	993.549496	0.17817	8.8691E-05	-3.1825	-0.0015842	-3.0044	-0.0014955	497.78203207522216	29.519	0.32378	29.519	29.415	29.739	0					16	8	3	0	0	0	0.18416	1	9943	9943		63.534	6.8128	1	216700			18852	1411	11883	11938	19140	19140					0.052463405860066814
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.781982421875	2	497.782025	993.549496	-0.71856	-0.00035769	0.39534	0.00019679	-0.32322	-0.00016089	497.78229773272267	29.657	0.11495	29.657	29.6	29.715	0					6	2	3	0	0	0	0.15163	1	10902	10902		67.494	21.542	1	239960			18853	1411	11883	11938	19141	19141					0.052463405860066814
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7817687988281	2	497.782025	993.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.717	1	29.717	29.217	30.217	0								0	0	0	0.095784	1	10919	10919		72.879	4.0924	1				18854	1411	11883	11938	19142	19142					0.052463405860066814
IYNHITTRV	9	Unmodified	_IYNHITTRV_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.8120727539062	2	558.811648	1115.60874	1.8001	0.0010059	-1.1823	-0.00066069	0.61776	0.00034521	558.810842406577	25.249	0.31767	25.249	25.148	25.466	0					11	7	3	0	0	0	0.40353	1	8615	8615		41.427	2.6205	1	452500			18855	11444	11884	11939	19143	19143					0.055562366001595365
IYNKTTIP	8	Unmodified	_IYNKTTIP_					0	0	0		ENST00000374012.7_1_20:34537059-34537140:+|nuORF	ENST00000374012.7_1_20:34537059-34537140:+|nuORF	ENST00000374012.7_1_20:34537059-34537140:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2720947265625	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.002	1	31.002	30.502	31.502	0								0	0	0	1.7419	1	11648	11648		55.504	2.1528	1				18856	9003	11885	11940	19144	19144					0.05170955557275647
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENSG00000153310|ENST00000694912|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.30419921875	2	531.303124	1060.5917	1.7212	0.0009145	0.091407	4.8565E-05	1.8126	0.00096307	531.3027706168755	47.026	0.13468	47.026	46.928	47.063	0					12	7	2	0	0	0	0.099922	1	18005	18005		79.451	15.917	1	71311			18857	5050	11886	11941	19145	19145					0.06382315994369492
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENSG00000153310|ENST00000694912|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.3040161132812	2	531.303124	1060.5917	3.4236	0.001819	-2.2557	-0.0011985	1.1679	0.00062051	531.3015463482984	46.985	0.35872	46.985	46.827	47.186	0					31	16	3	0	0	0	0.18605	1	18768	18768		63.306	17.334	1	293760			18858	5050	11886	11941	19146	19146					0.06382315994369492
IYNRSQPVL	9	Unmodified	_IYNRSQPVL_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.306396484375	2	545.306198	1088.59784	0.39725	0.00021662	0.3074	0.00016763	0.70465	0.00038425	545.3063228659091	29.281	0.32734	29.281	29.157	29.485	0					19	8	3	0	0	0	0.063823	1	10447	10447		90.37	16.115	1	433430			18859	7431	11887	11942	19147	19147					0.057088342259021374
IYNRSQPVL	9	Unmodified	_IYNRSQPVL_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3062744140625	2	545.306198	1088.59784	1.923	0.0010486	-1.3158	-0.00071749	0.60722	0.00033112	545.305281689511	29.302	0.32748	29.302	29.146	29.473	0					17	7	3	0	0	0	0.39215	1	10858	10858		42.396	0	1	383890			18860	7431	11887	11942	19148	19148					0.057088342259021374
IYNSQREHF	9	Unmodified	_IYNSQREHF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.2894897460938	2	597.288537	1192.56252	-0.56148	-0.00033537	0.34851	0.00020816	-0.21297	-0.0001272	597.2888718754999	22.599	0.06934	22.599	22.535	22.604	0					4	2	2	0	0	0	0.50858	1	6674	6674		31.53	1.2121	1	46573			18861	7471	11888	11943	19149	19149					-0.026058283018983275
IYPFFQNE	8	Unmodified	_IYPFFQNE_					0	0	0			REV__ENST00000553314.1_1_12:56814492-56814858:-|nuORF	REV__ENST00000553314.1_1_12:56814492-56814858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2513427734375	2	529.2531	1056.49165	-1.1751	-0.00062194	-1.2163	-0.0006437	-2.3914	-0.0012656	529.2522286215942	31.338	0.33212	31.338	31.222	31.555	0					19	8	4	0	0	0	0.30437	1	10766	10766		82.305	1.308	1	1610400	+		18862	20219	11889	11944	19150	19150					-0.034339213394332546
IYPKIGDKL	9	Unmodified	_IYPKIGDKL_					0	0	0		EFNB1|p.S236Cfs*80|1|0.38|ENSG00000090776|chrX:68840320-68840327|CCAAGGTG/-|frameshift_variant;EFNB1|p.G291Afs*30|1|0.41|ENSG00000090776|chrX:68840480-68840480|G/-|frameshift_variant;ENSG00000090776|ENST00000204961|EFNB1	EFNB1|p.S236Cfs*80|1|0.38|ENSG00000090776|chrX:68840320-68840327|CCAAGGTG/-|frameshift_variant	EFNB1|p.S236Cfs*80|1|0.38|ENSG00000090776|chrX:68840320-68840327|CCAAGGTG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8167724609375	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.721	1	31.721	31.221	32.221	0								0	0	0	0.1219	1	11990	11990		66.429	15.094	1				18863	887	11890	11945	19151	19151					0.0961979051680828
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.2911987304688	2	566.289682	1130.56481	3.4706	0.0019654	-1.2511	-0.00070847	2.2196	0.0012569	566.2888379891895	51.24	0.13988	51.24	51.17	51.31	0					11	8	2	0	0	0	0.076532	1	20078	20078		79.713	38.934	1	50479			18864	6781	11891	11946	19152	19152					0.004752073831923553
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;BBS4|p.E506Vfs*5|1|0.05|ENSG00000140463|chr15:72737544-72737545|AA/-|frameshift_variant;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.8087158203125	2	574.808574	1147.60259	-0.10534	-6.0549E-05	0.54846	0.00031526	0.44312	0.00025471	574.809202383876	30.83	0.18555	30.83	30.73	30.916	0					8	4	3	0	0	0	0.02429	1	11163	11163		98.629	10.933	1	688870			18865	283	11892	11947	19153	19153					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;BBS4|p.E506Vfs*5|1|0.05|ENSG00000140463|chr15:72737544-72737545|AA/-|frameshift_variant;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.8090209960938	2	574.808574	1147.60259	-0.17257	-9.9197E-05	1.2282	0.000706	1.0557	0.00060681	574.8093779267856	30.643	0.16553	30.643	30.577	30.742	0					10	6	2	0	0	0	0.16806	1	10079	10079		49.442	8.6634	1	73364			18866	283	11892	11947	19154	19154					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;BBS4|p.E506Vfs*5|1|0.05|ENSG00000140463|chr15:72737544-72737545|AA/-|frameshift_variant;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.5416259765625	3	383.541475	1147.60259	0.32021	0.00012281	-0.10432	-4.0011E-05	0.21589	8.2801E-05	383.5415601596836	30.86	0.36834	30.86	30.725	31.093	0					20	8	3	0	0	0	0.25716	1	11572	11572		54.776	3.2486	1	1049700			18867	283	11892	11947	19155	19155					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;BBS4|p.E506Vfs*5|1|0.05|ENSG00000140463|chr15:72737544-72737545|AA/-|frameshift_variant;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.808349609375	2	574.808574	1147.60259	-0.21223	-0.00012199	0.4827	0.00027746	0.27047	0.00015547	574.8087798598465	30.849	0.36749	30.849	30.758	31.126	0					18	8	4	0	0	0	0.0055674	1	11563	11563		139.97	57.73	1	720300			18868	283	11892	11947	19156	19156					0.03469718368660324
IYQKTLKIN	9	Unmodified	_IYQKTLKIN_					0	0	0		ENST00000431391.1_1_3:196042974-196043040:-|nuORF	ENST00000431391.1_1_3:196042974-196043040:-|nuORF	ENST00000431391.1_1_3:196042974-196043040:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.8401489257812	2	560.839874	1119.66519	-0.88776	-0.00049789	1.9775	0.001109	1.0897	0.00061115	560.8409156936067	26.146	0.13305	26.146	26.069	26.202	0					7	3	3	0	0	0	0.38666	1	8392	8392		27.882	0	1	140020			18869	9501	11893	11948	19157	19157					0.11014864436856442
IYQKYIARF	9	Unmodified	_IYQKYIARF_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2293701171875	3	401.229119	1200.66553	-0.60396	-0.00024232	0.63406	0.0002544	0.030103	1.2078E-05	401.22926278873445	33.119	0.34571	33.119	33.019	33.365	0					18	7	4	0	0	0	0.44593	1	12542	12542		37.812	1.3648	1	353090			18870	3684	11894	11949	19158	19158					0.07322284156703063
IYQLIFSSK	9	Unmodified	_IYQLIFSSK_					0	0	0			REV__tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	REV__tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.8139038085938	2	549.813325	1097.6121	0.33947	0.00018665	0.91006	0.00050036	1.2495	0.00068701	549.81356137361	28.194	0.35258	28.194	28.119	28.472	0					30	12	3	0	0	0	0.13726	1	9052	9052		54.776	1.6874	1	469910	+		18871	22097	11895	11950	19159	19159					0.06719486654196771
IYQLNIQI	8	Unmodified	_IYQLNIQI_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A;DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant;DENND5A|p.L896Vfs*14|1|0.2|ENSG00000184014|chr11:9150131-9150132|-/T|frameshift_variant	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.79339599609375	2	502.792392	1003.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.427	1	38.427	37.927	38.927	0								0	0	0	1.7419	1	12960	12960		26.796	0.10319	1				18872	6996	11896	11951	19160	19160					0.06858930965665877
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.3375244140625	2	573.337498	1144.66044	1.0665	0.00061144	-0.7093	-0.00040667	0.35716	0.00020477	573.3371759193758	31.711	0.31701	31.711	31.53	31.847	0					36	14	3	0	0	0	0.41113	1	10167	10167		40.778	1.5253	1	264370			18873	5941	11897	11952	19161	19161					0.0938998029407685
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.33837890625	2	573.337498	1144.66044	-0.11234	-6.4406E-05	0.90101	0.00051658	0.78867	0.00045218	573.3378933874877	31.937	0.58906	31.937	31.685	32.274	0					31	12	4	0	0	0	0.12834	1	12054	12054		72.879	18.103	1	851120			18874	5941	11897	11952	19162	19162					0.0938998029407685
IYQVQNQGLS	10	Unmodified	_IYQVQNQGLS_					0	0	0		ENST00000528986.1_1_11:121971359-121971719:-|nuORF	ENST00000528986.1_1_11:121971359-121971719:-|nuORF	ENST00000528986.1_1_11:121971359-121971719:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2988891601562	2	575.29857	1148.58259	-0.096985	-5.5796E-05	0.12257	7.0512E-05	0.025581	1.4717E-05	575.2985182712168	30.912	0.34713	30.912	30.822	31.169	0					28	8	6	0	0	0	0.44601	1	11182	11182		51.193	5.2407	1	4056000			18875	10405	11898	11953	19163	19163					0.014239226380595937
IYRELEKN	8	Unmodified	_IYRELEKN_					0	0	0		tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7908935546875	2	532.790381	1063.56621	1.7243	0.00091868	-1.62	-0.00086312	0.10428	5.556E-05	532.7897505497025	36.746	0.53282	36.746	36.532	37.065	0					48	16	4	0	0	0	0.32815	1	14336	14336		79.451	5.196	1	1014200			18876	22837	11899	11954	19164	19164					0.03696841471969492
IYRGEEDL	8	Unmodified	_IYRGEEDL_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7425537109375	2	497.745639	993.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.127	1	39.127	38.627	39.627	0								0	0	0	1.7419	1	13965	13965		49.442	1.7842	1				18877	1663	11900	11955	19165	19165					-0.020274132074405316
IYRMDGSYR	9	Oxidation (M)	_IYRM(Oxidation (M))DGSYR_		IYRM(1)DGSYR		IYRM(42)DGSYR	0	0	1		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7783203125	2	588.776948	1175.53934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.994	1	43.994	43.494	44.494	0								0	0	0	0.2591	1	17629	17629		42.396	11.892	1				18878	926	11901	11956	19166	19166		43			-0.041405904109069525
IYRNTYTV	8	Unmodified	_IYRNTYTV_					0	0	0			REV__ENSG00000087338|ENST00000282570|GMCL1	REV__ENSG00000087338|ENST00000282570|GMCL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.272216796875	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.694	1	37.694	37.194	38.194	0								0	0	0	1.7419	1	12333	12333		37.159	0	1		+		18879	13384	11902	11957	19167	19167					0.015971699261854155
IYRPGPNL	8	Unmodified	_IYRPGPNL_					0	0	0			REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2637939453125	2	465.263802	928.513051	-0.83034	-0.00038633	4.2519	0.0019783	3.4216	0.0015919	465.26587592307396	29.767	0.62035	29.767	29.404	30.024	0					64	23	4	0	0	0	0.68754	1	9602	9602		35.201	1.6851	1	577310	+		18880	15829	11903	11958	19168	19168					0.04593508479945285
IYRPGPNL	8	Unmodified	_IYRPGPNL_					0	0	0			REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2659606933594	2	465.263802	928.513051	0.67755	0.00031524	3.4262	0.0015941	4.1038	0.0019093	465.26545461242284	30	0.91074	30	29.553	30.464	0					59	19	4	0	0	0	0.65276	1	11246	11246		40.573	7.057	1	3432900	+		18881	15829	11903	11958	19169	19169					0.04593508479945285
IYRPGPNL	8	Unmodified	_IYRPGPNL_					0	0	0			REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.26751708984375	2	465.263802	928.513051	2.6166	0.0012174	0.41906	0.00019497	3.0357	0.0014124	465.2640299722074	29.911	0.85928	29.911	29.566	30.425	0					57	17	4	0	0	0	0.60719	1	11075	11075		47.916	1.9636	1	4173200	+		18882	15829	11903	11958	19170	19170					0.04593508479945285
IYSFQAFY	8	Unmodified	_IYSFQAFY_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7498779296875	2	519.750193	1037.48583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.41	1	42.41	41.91	42.91	0								0	0	0	1.7419	1	16645	16645		57.811	9.8957	1				18883	4584	11904	11959	19171	19171					-0.03141019851091187
IYSSLRYL	8	Unmodified	_IYSSLRYL_					0	0	0			REV__ENSG00000102802|ENST00000380482|MEDAG	REV__ENSG00000102802|ENST00000380482|MEDAG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.78289794921875	2	507.784567	1013.55458	-1.9104	-0.00097007	-1.5196	-0.00077163	-3.43	-0.0017417	507.78356665437565	28.672	0.12207	28.672	28.628	28.75	0					6	3	2	0	0	0	0.70055	1	9555	9555		33.516	6.7195	1	51534	+		18884	13646	11905	11960	19172	19172					0.048346444486242035
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.8331298828125	2	595.832049	1189.64954	1.708	0.0010177	-1.4757	-0.00087927	0.23234	0.00013843	595.8313073277906	34.836	0.36413	34.836	34.717	35.081	0					14	7	2	0	0	0	0.022525	1	13399	13399		90.37	39.177	1	307170			18885	4855	11906	11961	19173	19173					0.06230577919791358
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.5573425292969	3	397.557125	1189.64954	0.37208	0.00014792	-0.69669	-0.00027698	-0.32462	-0.00012905	397.55677978712083	34.872	0.51161	34.872	34.717	35.229	0					17	10	2	0	0	0	0.24334	1	13400	13400		56.434	8.4743	1	501760			18886	4855	11906	11961	19174	19174					0.06230577919791358
IYTISGDVYI	10	Unmodified	_IYTISGDVYI_					0	0	0		ENSG00000087842|ENST00000380420|PIR	ENSG00000087842|ENST00000380420|PIR	ENSG00000087842|ENST00000380420|PIR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.8706970214844	3	381.869257	1142.58594	3.2325	0.0012344	0.32334	0.00012347	3.5558	0.0013579	381.8694548156892	35.514	0.42048	35.514	35.347	35.768	0					22	8	4	0	0	0	0.64162	1	13705	13705		29.17	4.6509	1	816530			18887	1769	11907	11962	19175	19175					0.020351726920580404
IYTKGTPEI	9	Unmodified	_IYTKGTPEI_					0	0	0		PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;PSD3|p.F625Lfs*6|1|0.25|ENSG00000156011|chr8:18804557-18804557|A/-|frameshift_variant;PSD3|p.V655Efs*3|1|0.1|ENSG00000156011|chr8:18801329-18801330|-/CT|frameshift_variant;PSD3|p.L776Wfs*44|1|0.35|ENSG00000156011|chr8:18632699-18632699|A/-|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.28106689453125	2	511.281857	1020.54916	-0.13151	-6.7236E-05	2.795	0.001429	2.6635	0.0013618	511.78618848359554	29.654	0.082363	29.654	29.612	29.694	0					5	3	2	0	0	0	0.16806	1	9382	9382		65.465	3.358	1	44212			18888	5150	11908	11963	19176	19176					0.039709208661292905
IYTKGTPEI	9	Unmodified	_IYTKGTPEI_					0	0	0		PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;PSD3|p.F625Lfs*6|1|0.25|ENSG00000156011|chr8:18804557-18804557|A/-|frameshift_variant;PSD3|p.V655Efs*3|1|0.1|ENSG00000156011|chr8:18801329-18801330|-/CT|frameshift_variant;PSD3|p.L776Wfs*44|1|0.35|ENSG00000156011|chr8:18632699-18632699|A/-|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.28216552734375	2	511.281857	1020.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.93	1	29.93	29.43	30.43	0								0	0	0	0.040031	1	11135	11135		90.777	3.0224	1				18889	5150	11908	11963	19177	19177					0.039709208661292905
IYTKLNQKI	9	Unmodified	_IYTKLNQKI_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.8404541015625	2	560.839874	1119.66519	1.2785	0.00071705	-0.86697	-0.00048623	0.41156	0.00023082	560.8394929754206	26.072	0.13887	26.072	25.998	26.137	0					12	5	3	0	0	0	0.15558	1	7866	7866		51.193	11.94	1	161260			18890	4239	11909	11964	19178	19178					0.11014864436833705
IYTKLNQKI	9	Unmodified	_IYTKLNQKI_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.840576171875	2	560.839874	1119.66519	0.48737	0.00027334	0.54507	0.0003057	1.0324	0.00057904	560.8400898380821	26.322	0.25965	26.322	26.235	26.494	0					17	6	4	0	0	0	0.010427	1	9052	9052		124.08	15.993	1	1548000			18891	4239	11909	11964	19179	19179					0.11014864436833705
IYTKLNQKI	9	Unmodified	_IYTKLNQKI_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.22906494140625	3	374.229008	1119.66519	0.32481	0.00012155	-0.22824	-8.5413E-05	0.096578	3.6142E-05	374.22889501598223	26.322	0.25965	26.322	26.235	26.494	0					17	6	4	0	0	0	0.44593	1	9053	9053		37.812	8.662	1	2759500			18892	4239	11909	11964	19180	19180					0.11014864436833705
IYTKLNQKI	9	Unmodified	_IYTKLNQKI_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.8394775390625	2	560.839874	1119.66519	-0.43138	-0.00024193	0.034805	1.952E-05	-0.39657	-0.00022241	560.8399545597201	26.083	0.097446	26.083	26.015	26.113	0					5	3	2	0	0	0	0.082776	1	8147	8147		67.494	12.717	1	102330			18893	4239	11909	11964	19181	19181					0.11014864436833705
IYTKLNQKI	9	Unmodified	_IYTKLNQKI_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8401489257812	2	560.839874	1119.66519	-0.02693	-1.5103E-05	0.61934	0.00034735	0.59241	0.00033225	560.8402576657094	26.332	0.16096	26.332	26.249	26.41	0					8	3	3	0	0	0	0.017421	1	9406	9406		110.12	38.242	1	500500			18894	4239	11909	11964	19182	19182					0.11014864436833705
IYTNHLYVY	9	Unmodified	_IYTNHLYVY_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.2975463867188	2	593.300581	1184.58661	-0.54203	-0.00032158	-2.3814	-0.0014129	-2.9235	-0.0017345	593.2981518834154	36.458	0.11571	36.458	36.411	36.527	0					9	6	2	0	0	0	0.25109	1	12360	12360		55.504	4.3115	1	47580			18895	838	11910	11965	19183	19183					0.0017001213177536556
IYTNLNQKI	9	Unmodified	_IYTNLNQKI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.31494140625	2	553.813856	1105.61316	1.3149	0.00072823	-0.525	-0.00029075	0.78993	0.00043748	553.8135876109402	32.509	0.18877	32.509	32.416	32.604	0					13	8	3	0	0	0	0.078509	1	10505	10505		85.161	33.825	1	102540			18896	4597	11911	11966	19184	19184					0.06457701023077789
IYTNLNQKI	9	Unmodified	_IYTNLNQKI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.8140869140625	2	553.813856	1105.61316	0.6109	0.00033833	0.63624	0.00035236	1.2471	0.00069069	553.8137105057405	32.807	0.42871	32.807	32.656	33.084	0					32	11	4	0	0	0	0.0025054	1	12041	12041		171.53	32.706	1	686720			18897	4597	11911	11966	19185	19185					0.06457701023077789
IYTNLNQKI	9	Unmodified	_IYTNLNQKI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8134155273438	2	553.813856	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.552	1	32.552	32.052	33.052	0								0	0	0	0.3693	1	10869	10869		19.997	0	1				18898	4597	11911	11966	19186	19186					0.06457701023077789
IYTNLNQKI	9	Unmodified	_IYTNLNQKI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8145751953125	2	553.813856	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.73	1	32.73	32.23	33.23	0								0	0	0	0.04624	1	12464	12464		87.696	13.441	1				18899	4597	11911	11966	19187	19187					0.06457701023077789
IYTNLNQKI	9	Unmodified	_IYTNLNQKI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.8148193359375	2	553.813856	1105.61316	-1.1687	-0.00064724	2.5361	0.0014045	1.3674	0.00075728	553.8152618781057	32.515	0.13599	32.515	32.469	32.605	0					6	4	2	0	0	0	0.085655	1	11314	11314		82.75	0.44546	1	74553			18900	4597	11911	11966	19188	19188					0.06457701023077789
IYTNLNQKI	9	Unmodified	_IYTNLNQKI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.814208984375	2	553.813856	1105.61316	3.6107	0.0019997	-1.2045	-0.00066709	2.4062	0.0013326	553.812046842254	32.736	0.45652	32.736	32.59	33.046	0					34	9	5	0	0	0	0.00073892	1	12364	12364		185.55	59.736	1	1313600			18901	4597	11911	11966	19189	19189					0.06457701023077789
IYTQERDP	8	Unmodified	_IYTQERDP_					0	0	0		ENST00000381279.3_1_6:139981105-139981588:+|nuORF	ENST00000381279.3_1_6:139981105-139981588:+|nuORF	ENST00000381279.3_1_6:139981105-139981588:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.25079345703125	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.004	1	30.004	29.504	30.504	0								0	0	0	1.7419	1	10774	10774		47.916	0	1				18902	9110	11912	11967	19190	19190					-0.021800108331490264
IYTSSVLEK	9	Unmodified	_IYTSSVLEK_					0	0	0		SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2857666015625	2	520.28714	1038.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.335	1	13.335	12.835	13.835	0								0	0	0	0.21054	1	3224	3224		49.442	5.7908	1				18903	2476	11913	11968	19191	19191					0.0419890352056882
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.790771484375	2	526.790381	1051.56621	0.59713	0.00031456	-0.070621	-3.7202E-05	0.52651	0.00027736	526.7902134557163	29.585	0.57546	29.585	29.486	30.062	0					65	22	5	0	0	0	0.035062	2	9329	9329;9464		104.06	43.939	1	10463000			18904	7015	11914	11969	19192;19193	19192					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7906494140625	2	526.790381	1051.56621	0.10242	5.3951E-05	0.32961	0.00017364	0.43203	0.00022759	526.7904850056167	29.848	0.88713	29.848	29.723	30.61	0					69	22	5	0	0	0	0.0097668	1	10687	10687		141.52	69.643	1	41603000			18905	7015	11914	11969	19194	19194					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7909545898438	2	526.790381	1051.56621	0.3852	0.00020292	0.16429	8.6548E-05	0.54949	0.00028947	526.7904410133494	29.622	0.45111	29.622	29.511	29.962	0					50	17	5	0	0	0	0.0097668	1	9641	9641		141.52	69.643	1	7676600			18906	7015	11914	11969	19195	19195					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7905883789062	2	526.790381	1051.56621	0.50191	0.0002644	0.0090161	4.7496E-06	0.51093	0.00026915	526.7903594754448	29.616	0.487	29.616	29.527	30.014	0					49	18	5	0	0	0	0.037924	1	9638	9638		101.25	37.946	1	6736400			18907	7015	11914	11969	19196	19196					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7906494140625	2	526.790381	1051.56621	1.7611	0.00092774	-1.4155	-0.00074566	0.34563	0.00018208	526.7895251072292	29.86	0.6164	29.86	29.75	30.367	0					43	13	5	0	0	0	0.013878	1	11087	11087		132.76	66.955	1	35419000			18908	7015	11914	11969	19197	19197					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7907104492188	2	526.790381	1051.56621	0.2643	0.00013923	-0.20929	-0.00011025	0.055006	2.8977E-05	526.7903241832994	29.843	0.95007	29.843	29.683	30.633	0					55	20	5	0	0	0	0.020674	2	11079	11079;11261		120.87	51.241	1	31954000			18909	7015	11914	11969	19198;19199	19198					0.04248841471940068
IYVSEKGTGQQ	11	Unmodified	_IYVSEKGTGQQ_					0	0	0		ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000439124.1_1_6:64325734-64326112:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	605.3073120117188	2	605.309135	1208.60372	-1.9177	-0.0011608	-1.5315	-0.000927	-3.4491	-0.0020878	605.308265543472	15.967	0.093349	15.967	15.933	16.026	0					5	3	2	0	0	0	0.51875	1	3688	3688		42.864	2.8061	1	143260			18910	9555	11915	11970	19200	19200					0.007758879469065505
IYVTMEILS	9	Unmodified	_IYVTMEILS_					0	0	0		ENST00000573850.1_1_16:27709674-27761267:+|nuORF;ENSG00000047578|ENST00000261588|KATNIP	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7880249023438	2	534.785918	1067.55728	3.3742	0.0018045	0.21536	0.00011517	3.5895	0.0019196	534.7861660220248	23.158	0.16463	23.158	23.053	23.218	0					8	3	3	0	0	0	0.32741	1	7822	7822		47.916	1.9636	1	1508700			18911	1221	11916	11971	19201	19201					0.026207317912621875
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.8086547851562	2	582.808042	1163.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.747	1	47.747	47.247	48.247	0								0	0	0	0.15865	1	19032	19032		57.811	6.4758	1				18912	2654	11917	11972	19202	19202					0.02627503999747205
IYYVDVQKF	9	Unmodified	_IYYVDVQKF_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1;SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.3118286132812	2	587.810782	1173.60701	1.4443	0.00084899	-0.73815	-0.00043389	0.70618	0.0004151	587.8103447555861	43.931	0.1237	43.931	43.853	43.976	0					9	5	2	0	0	0	0.12834	1	17147	17147		56.721	0	1	49159			18913	5363	11918	11973	19203	19203					0.027151827915531612
KAAEGDLPR	9	Unmodified	_KAAEGDLPR_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7615966796875	2	478.761623	955.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.461	1	16.461	15.961	16.961	0								0	0	0	0.22284	1	3953	3953		47.657	1.7054	1		+		18914	17092	11919	11974	19204	19204					0.029159992663721823
KAAEPDRF	8	Unmodified	_KAAEPDRF_					0	0	0			REV__CON__A2I7N0	REV__CON__A2I7N0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2430725097656	2	467.243067	932.47158	0.37648	0.00017591	-0.33301	-0.0001556	0.043469	2.0311E-05	467.2428568085989	20.527	0.28081	20.527	20.433	20.714	0					9	6	2	0	0	0	0.44433	1	6392	6392		65.803	2.2693	1	773140	+	+	18915	12573	11920	11975	19205	19205					0.0026432772061752985
KAAEVLKVQK	10	Unmodified	_KAAEVLKVQK_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.353759765625	2	557.353148	1112.69174	1.2966	0.00072267	-0.30035	-0.0001674	0.99627	0.00055527	557.353128298164	17.953	0.13062	17.953	17.868	17.999	0					7	3	3	0	0	0	0.50639	1	4396	4396		47.96	24.917	1	144850			18916	2725	11921	11976	19206	19206					0.13990553328176247
KAAEVLKVQK	10	Unmodified	_KAAEVLKVQK_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.3533935546875	2	557.353148	1112.69174	0.55055	0.00030685	0.064664	3.604E-05	0.61521	0.00034289	557.3530656049351	18.287	0.14145	18.287	18.198	18.339	0					8	3	3	0	0	0	0.05301	1	5333	5333		96.665	25.287	1	875970			18917	2725	11921	11976	19207	19207					0.13990553328176247
KAAEVLKVQK	10	Unmodified	_KAAEVLKVQK_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.3534545898438	2	557.353148	1112.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.023	1	18.023	17.523	18.523	0								0	0	0	0.0016505	1	4620	4620		136.99	69.495	1				18918	2725	11921	11976	19208	19208					0.13990553328176247
KAAFSRLYQL	10	Unmodified	_KAAFSRLYQL_					0	0	0		nc|ENSG00000215193|Q7Z412-2|PEX26;ENSG00000215193|ENST00000399744|PEX26	nc|ENSG00000215193|Q7Z412-2|PEX26	nc|ENSG00000215193|Q7Z412-2|PEX26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.5643615722656	3	399.564391	1195.67134	0.9311	0.00037204	-1.1886	-0.0004749	-0.25745	-0.00010287	399.5639001883866	28.926	0.29458	28.926	28.846	29.141	0					16	7	3	0	0	0	0.61238	1	10274	10274		32.751	4.669	1	269580			18919	7826	11922	11977	19209	19209					0.08133382668370359
KAAGAGKVT	9	Unmodified	_KAAGAGKVT_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.7426452636719	2	401.742702	801.470852	0.056246	2.2596E-05	-0.41773	-0.00016782	-0.36148	-0.00014522	401.74243661579675	12.159	0.097622	12.159	12.11	12.208	0					4	2	2	0	0	0	0.048471	1	2677	2677		95.815	27.028	1	120000			18920	5177;8845	11923	11978	19210	19210					0.06217533071549042
KAAGAGKVTK	10	Unmodified	_KAAGAGKVTK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.78997802734375	2	465.790184	929.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.285	1	11.285	10.785	11.785	0								0	0	0	2.1664E-08	1	2162	2162		195.57	73.397	1				18921	5177;8845	11924	11979	19211	19211					0.09821466542734925
KAAGAGKVTK	10	Unmodified	_KAAGAGKVTK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7907409667969	2	465.790184	929.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.115	1	11.115	10.615	11.615	0								0	0	0	0.22047	1	2130	2130		61.691	0.71934	1				18922	5177;8845	11924	11979	19212	19212					0.09821466542734925
KAAGAGKVTK	10	Unmodified	_KAAGAGKVTK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7901916503906	2	465.790184	929.565815	-0.13659	-6.3624E-05	-0.5534	-0.00025777	-0.68999	-0.00032139	465.78989150775874	11.353	0.18102	11.353	11.272	11.453	0					11	6	2	0	0	0	0.012989	1	2287	2287		131.62	40.84	1	1605100			18923	5177;8845	11924	11979	19213	19213					0.09821466542734925
KAAGAGKVTK	10	Unmodified	_KAAGAGKVTK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7901611328125	2	465.790184	929.565815	0.67078	0.00031244	-1.2209	-0.00056866	-0.55008	-0.00025622	465.7896185584487	11.338	0.14934	11.338	11.288	11.438	0					10	5	3	0	0	0	0.010724	1	2293	2293		140.11	38.512	1	476560			18924	5177;8845	11924	11979	19214	19214					0.09821466542734925
KAAGAGKVTK	10	Unmodified	_KAAGAGKVTK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7901306152344	2	465.790184	929.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.302	1	11.302	10.802	11.802	0								0	0	0	0.012705	1	2178	2178		109.44	21.742	1				18925	5177;8845	11924	11979	19215	19215					0.09821466542734925
KAAGAGKVTK	10	Unmodified	_KAAGAGKVTK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7904357910156	2	465.790184	929.565815	0.67109	0.00031259	-0.78378	-0.00036508	-0.11269	-5.249E-05	465.789856927811	11.323	0.10995	11.323	11.27	11.38	0					12	6	3	0	0	0	1.6956E-06	1	2176	2176		204.79	55.801	1	493730			18926	5177;8845	11924	11979	19216	19216					0.09821466542734925
KAAGALSK	8	Unmodified	_KAAGALSK_					0	0	0			REV__ENSG00000135569|ENST00000258034|TAAR5	REV__ENSG00000135569|ENST00000258034|TAAR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.23175048828125	2	373.231971	744.449388	-1.0522	-0.00039273	0.89816	0.00033522	-0.15408	-5.7509E-05	373.23226327142413	17.151	0.07066	17.151	17.108	17.179	0					4	2	2	0	0	0	0.3961	1	4246	4246		71.296	0	1	267030	+		18927	14811	11925	11980	19217	19217					0.06694148042856796
KAAGALSK	8	Unmodified	_KAAGALSK_					0	0	0			REV__ENSG00000135569|ENST00000258034|TAAR5	REV__ENSG00000135569|ENST00000258034|TAAR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.2320556640625	2	373.231971	744.449388	-0.12046	-4.4961E-05	0.12589	4.6985E-05	0.0054224	2.0238E-06	373.23195263695175	17.169	0.095039	17.169	17.105	17.2	0					6	3	2	0	0	0	0.41701	1	4218	4218		68.787	7.8149	1	116930	+		18928	14811	11925	11980	19218	19218					0.06694148042856796
KAAGGATPK	9	Unmodified	_KAAGGATPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.73492431640625	2	400.734877	799.455202	0.063714	2.5532E-05	0.12515	5.0152E-05	0.18886	7.5685E-05	400.73489121144166	10.942	0.089832	10.942	10.889	10.979	0					7	5	2	0	0	0	0.085655	1	2138	2138		82.75	16.947	1	38836			18929	7222	11926	11981	19219	19219					0.04745246554523419
KAAGGATPKK	10	Unmodified	_KAAGGATPKK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.78271484375	2	464.782359	927.550165	-0.13956	-6.4863E-05	0.50502	0.00023472	0.36546	0.00016986	464.7826678030164	10.673	0.050987	10.673	10.625	10.676	0					4	2	2	0	0	0	0.034592	1	2067	2067		114.86	13.258	1	123130			18930	7222	11927	11982	19220	19220					0.08349180025709302
KAAGGATPKK	10	Unmodified	_KAAGGATPKK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7821960449219	2	464.782359	927.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.675	1	10.675	10.175	11.175	0								0	0	0	0.17743	1	2072	2072		66.962	12.186	1				18931	7222	11927	11982	19221	19221					0.08349180025709302
KAAGKVHKNR	10	Unmodified	_KAAGKVHKNR_					0	0	0			REV__nc|ENSG00000204700|O76002|OR2J2	REV__nc|ENSG00000204700|O76002|OR2J2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	370.2267150878906	3	370.228113	1107.66251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.018	1	18.018	17.518	18.518	0								0	0	0	0.4201	1	4636	4636		22.58	0.61977	1		+		18932	17497	11928	11983	19222	19222					0.11298453822564625
KAAHLSLKQ	9	Unmodified	_KAAHLSLKQ_					0	0	0		CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant	CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant	CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.3053894042969	2	498.303458	994.592364	0.22253	0.00011089	2.4044	0.0011981	2.6269	0.001309	498.30462084323443	20.56	0.21685	20.56	20.49	20.707	0					10	6	2	0	0	0	0.30257	1	5521	5521		42.864	0	1	140520			18933	577	11929	11984	19223	19223					0.0948515543409485
KAAHLSLKQ	9	Unmodified	_KAAHLSLKQ_					0	0	0		CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant	CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant	CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.5383605957031	3	332.538064	994.592364	1.4978	0.00049808	-0.038879	-1.2929E-05	1.4589	0.00048515	332.53802927780305	20.822	0.51629	20.822	20.562	21.078	0					23	10	4	0	0	0	0.42902	1	6795	6795		39.253	1.4413	1	2216100			18934	577	11929	11984	19224	19224					0.0948515543409485
KAAIRCTKNK	10	Unmodified	_KAAIRCTKNK_					0	0	0			REV__BCORL1|p.A1166Lfs*56|2|0.28|ENSG00000085185|chrX:130021034-130021034|G/-|frameshift_variant	REV__BCORL1|p.A1166Lfs*56|2|0.28|ENSG00000085185|chrX:130021034-130021034|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	378.2250671386719	3	378.225492	1131.65465	0.30008	0.0001135	-1.0732	-0.00040592	-0.77314	-0.00029242	378.22505412276985	18.092	0.11731	18.092	18.018	18.135	0					4	2	2	0	0	0	0.54861	1	4659	4659		40.058	0.18502	1	41208	+		18935	12283	11930	11985	19225	19225					0.09408558510745024
KAAKAEEGSFA	11	Unmodified	_KAAKAEEGSFA_					0	0	0			REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7870483398438	2	554.785296	1107.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.6	1	18.6	18.1	19.1	0								0	0	0	0.45674	1	5737	5737		23.523	0.94304	1		+		18936	14495	11931	11986	19226	19226					0.006562337467130419
KAAKDETAK	9	Unmodified	_KAAKDETAK_					0	0	0			REV__nc|ENSG00000100285|P12036-2|NEFH	REV__nc|ENSG00000100285|P12036-2|NEFH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.26910400390625	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.825	1	11.825	11.325	12.325	0								0	0	0	0.3693	1	2367	2367		19.997	0.6368	1		+		18937	13534	11932	11987	19227	19227					0.04216866063552516
KAAKELELR	9	Unmodified	_KAAKELELR_					0	0	0		tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.3224487304688	2	529.321848	1056.62914	0.072944	3.8611E-05	0.73454	0.00038881	0.80749	0.00042742	529.3223524052157	18.055	0.28723	18.055	17.869	18.156	0					12	8	3	0	0	0	0.056004	1	4651	4651		93.143	12.689	1	464980			18938	22573	11933	11988	19228	19228					0.10309407259978798
KAAKELELR	9	Unmodified	_KAAKELELR_					0	0	0		tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.322265625	2	529.321848	1056.62914	1.7392	0.00092058	-1.1125	-0.00058888	0.62665	0.0003317	529.3212907283538	18.301	0.46972	18.301	18.241	18.711	0					15	9	2	0	0	0	0.032383	1	5608	5608		106.68	10.649	1	2601300			18939	22573	11933	11988	19229	19229					0.10309407259978798
KAAKPSVPK	9	Unmodified	_KAAKPSVPK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.29486083984375	2	463.295102	924.575651	-0.47627	-0.00022066	0.048807	2.2612E-05	-0.42747	-0.00019804	463.2950788326822	14.769	0.27005	14.769	14.558	14.828	0					11	5	3	0	0	0	0.34452	1	3763	3763		46.457	0.50483	1	197550			18940	7041	11934	11989	19230	19230					0.11034654548132039
KAALKQLQ	8	Unmodified	_KAALKQLQ_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.28729248046875	2	450.287277	898.560001	-0.40093	-0.00018053	-0.22975	-0.00010346	-0.63068	-0.00028399	450.2872416249226	11.631	0.13509	11.631	11.524	11.659	0					6	4	2	0	0	0	0.37378	1	2289	2289		73.975	0	1	58908			18941	1219	11935	11990	19231	19231					0.10666368031081674
KAAMVKFNQ	9	Oxidation (M)	_KAAM(Oxidation (M))VKFNQ_		KAAM(1)VKFNQ		KAAM(91)VKFNQ	0	0	1			REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.780029296875	2	526.781502	1051.54845	-1.2126	-0.00063877	-0.66918	-0.00035251	-1.8818	-0.00099128	526.7811317903015	34.714	0.29522	34.714	34.595	34.89	0					19	10	3	0	0	0	0.062676	1	12304	12304		90.777	40.752	1	362190	+		18942	13151	11936	11991	19232	19232		509			0.024738029454283605
KAANPGCSL	9	Unmodified	_KAANPGCSL_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.71771240234375	2	430.71837	859.422187	-0.85509	-0.0003683	0.73718	0.00031752	-0.11791	-5.0786E-05	430.7187800388811	22.911	0.15946	22.911	22.818	22.977	0					7	5	2	0	0	0	0.56424	1	6819	6819		25.574	3.6142	1	54192			18943	2939	11937	11992	19233	19233					-0.013147035598535695
KAANRWKE	8	Unmodified	_KAANRWKE_					0	0	0		ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7772521972656	2	501.777608	1001.54066	-0.93542	-0.00046937	-4.2294	-0.0021222	-5.1648	-0.0025916	502.27609182583615	16.784	0.15741	16.784	16.699	16.856	0					13	6	3	0	0	0	0.61938	1	4102	4102		45.952	1.5748	1	281290			18944	4963	11938	11993	19234	19234					0.03995411740174859
KAANSSTIAV	10	Unmodified	_KAANSSTIAV_					0	0	0			REV__DPYSL5|p.V376I|1|0.43|ENSG00000157851|chr2:26941986-26941986|G/A|missense_variant	REV__DPYSL5|p.V376I|1|0.43|ENSG00000157851|chr2:26941986-26941986|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.26953125	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.356	1	13.356	12.856	13.856	0								0	0	0	0.26105	1	2613	2613		56.721	5.3856	1		+		18945	12737	11939	11994	19235	19235					0.04216866063575253
KAAPGQGR	8	Unmodified	_KAAPGQGR_					0	0	0		ENST00000518025.5_1_5:141017849-141019494:+|nuORF	ENST00000518025.5_1_5:141017849-141019494:+|nuORF	ENST00000518025.5_1_5:141017849-141019494:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.72509765625	2	392.724844	783.435135	0.12641	4.9645E-05	0.89212	0.00035036	1.0185	0.0004	392.72506317328185	45.824	0.26267	45.824	45.735	45.998	0					22	15	2	0	0	0	0.7887	1	17681	17681		12.959	0	1	82982			18946	10277	11940	11995	19236	19236					0.03475495614566171
KAAQQMLQ	8	Oxidation (M)	_KAAQQM(Oxidation (M))LQ_		KAAQQM(1)LQ		KAAQQM(48)LQ	0	0	1			REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2431945800781	2	467.244752	932.474951	0.04956	2.3157E-05	-3.0686	-0.0014338	-3.019	-0.0014106	467.2432151344166	20.164	0.14909	20.164	20.101	20.25	0					10	5	2	0	0	0	0.60719	1	5349	5349		47.916	7.343	1	65194	+		18947	15469	11941	11996	19237	19237		595			0.006012545029648209
KAAQSERLY	9	Unmodified	_KAAQSERLY_					0	0	0			REV__ENST00000555541.1_1_14:35044943-35055441:-|nuORF	REV__ENST00000555541.1_1_14:35044943-35055441:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.287841796875	2	533.288005	1064.56146	-1.2964	-0.00069137	1.5883	0.00084705	0.29192	0.00015568	533.2884374770573	19.651	0.095575	19.651	19.562	19.658	0					4	2	2	0	0	0	0.095583	1	5368	5368		84.916	2.165	1	146210	+		18948	14550	11942	11997	19238	19238					0.03175957329199264
KAARETKIL	9	Unmodified	_KAARETKIL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.325927734375	2	515.324391	1028.63423	0.77965	0.00040177	2.0291	0.0010456	2.8087	0.0014474	515.3256647559598	26.837	0.26708	26.837	26.677	26.944	0					9	5	2	0	0	0	0.33044	1	9664	9664		47.657	1.7054	1	249180			18949	2816	11943	11998	19239	19239					0.1210571112260368
KAARYSPLKF	10	Unmodified	_KAARYSPLKF_					0	0	0			REV__nc|ENSG00000159023|P11171-6|EPB41	REV__nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.8455810546875	2	590.84549	1179.67643	-0.48906	-0.00028896	0.69541	0.00041088	0.20635	0.00012192	590.8458351767096	22.043	0.2904	22.043	21.978	22.269	0					14	9	2	0	0	0	0.11278	1	6433	6433		93.195	16.421	1	216140	+		18950	15697	11944	11999	19240	19240					0.09377686530956453
KAAVIVSRDF	10	Unmodified	_KAAVIVSRDF_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.324462890625	2	553.321848	1104.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.375	1	24.375	23.875	24.875	0								0	0	0	0.37293	1	7185	7185		19.997	0	1		+		18951	17409	11945	12000	19241	19241					0.08101407259982807
KAAVTPGKK	9	Unmodified	_KAAVTPGKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2873229980469	2	450.287277	898.560001	0.63301	0.00028503	-0.55985	-0.00025209	0.073154	3.294E-05	450.2870903781218	11.633	0.11568	11.633	11.549	11.664	0					6	4	2	0	0	0	0.085655	1	2284	2284		82.75	11.455	1	66721			18952	2879	11946	12001	19242	19242					0.10666368031093043
KAAVTPGKK	9	Unmodified	_KAAVTPGKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2869567871094	2	450.287277	898.560001	-0.10062	-4.5307E-05	0.46654	0.00021008	0.36592	0.00016477	450.28744366461274	11.671	0.13456	11.671	11.588	11.722	0					8	3	3	0	0	0	0.047855	1	2438	2438		96.034	22.059	1	205080			18953	2879	11946	12001	19243	19243					0.10666368031093043
KACRGCREK	9	2 Carbamidomethyl (C)	_KAC(Carbamidomethyl (C))RGC(Carbamidomethyl (C))REK_	KAC(1)RGC(1)REK		KAC(53)RGC(53)REK		0	2	0		ENST00000530199.5_1_11:22848753-22850842:-|nuORF	ENST00000530199.5_1_11:22848753-22850842:-|nuORF	ENST00000530199.5_1_11:22848753-22850842:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.791259765625	2	582.789866	1163.56518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.648	1	35.648	35.148	36.148	0								0	0	0	0.18645	1	13829	13829		52.937	6.4799	1				18954	10422	11947	12002	19244	19244	421;422				-0.010060194402512934
KADAESGLWA	10	Unmodified	_KADAESGLWA_					0	0	0		ENST00000341511.10_1_9:139901839-139902202:-|nuORF	ENST00000341511.10_1_9:139901839-139902202:-|nuORF	ENST00000341511.10_1_9:139901839-139902202:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2621459960938	2	524.258914	1046.50327	3.426	0.0017961	2.3114	0.0012118	5.7374	0.0030079	524.2603874679776	14.534	0.27079	14.534	14.423	14.694	0					7	5	2	0	0	0	0.536	1	3649	3649		41.427	0.64845	1	1051400			18955	8736	11948	12003	19245	19245					-0.018117243160759244
KADDMSDDQ	9	Oxidation (M)	_KADDM(Oxidation (M))SDDQ_		KADDM(1)SDDQ		KADDM(58)SDDQ	0	0	1		ENSG00000167670|ENST00000301280|CHAF1A;CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant;CHAF1A|p.A486Lfs*24|1|0.09|ENSG00000167670|chr19:4428742-4428742|G/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.6976928710938	2	520.695486	1039.37642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.839	1	14.839	14.339	15.339	0								0	0	0	0.15687	1	3704	3704		58.23	8.7884	1				18956	6015	11949	12004	19246	19246		245			-0.1416943832339257
KADFRGQWVLM	11	Unmodified	_KADFRGQWVLM_					0	0	0		nc|ENSG00000284194|O43819|SCO2	nc|ENSG00000284194|O43819|SCO2	nc|ENSG00000284194|O43819|SCO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.9049377441406	3	450.904419	1349.69143	0.64502	0.00029084	0.51355	0.00023156	1.1586	0.00052241	450.90467394405937	15.816	0.16926	15.816	15.739	15.909	0					11	4	3	0	0	0	0.72624	1	4176	4176		25.126	1.7481	1	256880			18957	11815	11950	12005	19247	19247					0.030568103366704236
KADGGKEQLTY	11	Unmodified	_KADGGKEQLTY_					0	0	0		ENST00000489842.1_1_9:135931263-135933364:+|nuORF;nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	ENST00000489842.1_1_9:135931263-135933364:+|nuORF	ENST00000489842.1_1_9:135931263-135933364:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8103637695312	2	605.309135	1208.60372	0.4162	0.00025193	-1.0763	-0.00065148	-0.66008	-0.00039955	605.3084523076955	35.816	0.15427	35.816	35.73	35.884	0					7	4	2	0	0	0	0.66915	1	13914	13914		30.569	0.25114	1	62423			18958	4820	11951	12006	19248	19248					0.007758879469065505
KADKSKTKS	9	Unmodified	_KADKSKTKS_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7922668457031	2	496.790381	991.566209	3.4032	0.0016907	0.072804	3.6168E-05	3.4761	0.0017269	496.7903781913603	29.291	0.23212	29.291	29.19	29.422	0					22	9	3	0	0	0	0.30951	1	9508	9508		49.442	49.442	1	471100	+		18959	17589	11952	12007	19249	19249					0.0700884147195211
KADLNSNL	8	Unmodified	_KADLNSNL_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7351379394531	2	437.735074	873.455596	-0.27922	-0.00012222	-0.19233	-8.419E-05	-0.47155	-0.00020641	437.7349640663087	18.682	0.23623	18.682	18.589	18.826	0					10	7	2	0	0	0	0.39125	1	4681	4681		71.877	3.0906	1	229610	+		18960	16220	11953	12008	19250	19250					0.01380621483701816
KADLNSNL	8	Unmodified	_KADLNSNL_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7347412109375	2	437.735074	873.455596	-0.3938	-0.00017238	-0.048412	-2.1192E-05	-0.44221	-0.00019357	437.7350118523211	19.001	0.25585	19.001	18.913	19.169	0					9	6	2	0	0	0	0.34592	1	5660	5660		77.318	0.54344	1	1119100	+		18961	16220	11953	12008	19251	19251					0.01380621483701816
KADSGLKIL	9	Unmodified	_KADSGLKIL_					0	0	0		ENST00000425839.1_1_6:30437447-30438005:+|nuORF	ENST00000425839.1_1_6:30437447-30438005:+|nuORF	ENST00000425839.1_1_6:30437447-30438005:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7917785644531	2	472.792392	943.570232	-0.026949	-1.2741E-05	0.068889	3.257E-05	0.04194	1.9829E-05	472.7924442666759	21.101	0.18977	21.101	21.028	21.218	0					6	5	2	0	0	0	0.46194	1	5783	5783		36.447	3.6343	1	93806			18962	9440	11954	12009	19252	19252					0.0961893096566655
KAEAHFSLV	9	Unmodified	_KAEAHFSLV_					0	0	0		ENSG00000006788|ENST00000252172|MYH13;MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant	ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2745666503906	2	501.274367	1000.53418	-0.11148	-5.5882E-05	0.027387	1.3728E-05	-0.084092	-4.2153E-05	501.27434175656884	33.016	0.19127	33.016	32.893	33.084	0					17	5	4	0	0	0	0.14603	1	12161	12161		68.787	7.8149	1	1721500			18963	989	11955	12010	19253	19253					0.03393473788810297
KAEALYHRI	9	Unmodified	_KAEALYHRI_					0	0	0			REV__ENSG00000100288|ENST00000406938|CHKB	REV__ENSG00000100288|ENST00000406938|CHKB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8137817382812	2	550.81419	1099.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.139	1	21.139	20.639	21.639	0								0	0	0	0.27025	1	6074	6074		40.778	2.9666	1		+		18964	13535	11956	12011	19254	19254					0.06800540462791105
KAEDSARTL	9	Unmodified	_KAEDSARTL_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7641296386719	2	495.764363	989.514173	0.73483	0.0003643	-0.68669	-0.00034044	0.048133	2.3863E-05	495.76403403884916	17.306	0.13369	17.306	17.224	17.357	0					5	3	2	0	0	0	0.029571	1	4867	4867		109.44	8.1862	1	435710			18965	6525	11957	12012	19255	19255					0.01899678058180143
KAEDSARTL	9	Unmodified	_KAEDSARTL_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7639465332031	2	495.764363	989.514173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.094	1	17.094	16.594	17.594	0								0	0	0	0.241	1	4192	4192		45.022	8.5755	1				18966	6525	11957	12012	19256	19256					0.01899678058180143
KAEDVEKIS	9	Unmodified	_KAEDVEKIS_					0	0	0			REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.77471923828125	2	509.774396	1017.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.703	1	17.703	17.203	18.203	0								0	0	0	0.080575	1	4469	4469		77.318	4.4383	1		+		18967	12336	11958	12013	19257	19257					0.026174289981327092
KAEDVEKIS	9	Unmodified	_KAEDVEKIS_					0	0	0			REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7745056152344	2	509.774396	1017.53424	3.0276	0.0015434	-2.7999	-0.0014273	0.22767	0.00011606	509.7728778722592	17.861	0.11438	17.861	17.8	17.915	0					6	2	3	0	0	0	0.016683	1	5243	5243		127.46	6.5933	1	807340	+		18968	12336	11958	12013	19258	19258					0.026174289981327092
KAEEVDVTK	9	Unmodified	_KAEEVDVTK_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant;MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.77435302734375	2	509.774396	1017.53424	-0.48197	-0.00024569	0.20942	0.00010676	-0.27255	-0.00013894	509.7746422507293	17.631	0.10146	17.631	17.564	17.666	0					5	3	2	0	0	0	0.054723	1	4449	4449		93.598	5.4206	1	115370			18969	3733	11959	12014	19259	19259					0.02617428998144078
KAEEVDVTK	9	Unmodified	_KAEEVDVTK_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant;MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7743225097656	2	509.774396	1017.53424	1.1813	0.00060219	-1.576	-0.0008034	-0.39471	-0.00020121	509.77364656288717	17.852	0.27038	17.852	17.684	17.955	0					7	3	3	0	0	0	0.040209	1	5385	5385		99.013	0.38357	1	609280			18970	3733	11959	12014	19260	19260					0.02617428998144078
KAEFLKTLC	9	Unmodified	_KAEFLKTLC_					0	0	0			REV__ENST00000290650.8_1_15:43250282-43256162:-|nuORF	REV__ENST00000290650.8_1_15:43250282-43256162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2496337890625	2	526.794078	1051.5736	0.10231	5.3894E-05	-0.69211	-0.0003646	-0.5898	-0.0003107	526.7937421890421	13.301	0.48697	13.301	13.178	13.665	0					24	13	4	0	0	0	0.42902	1	3055	3055		39.253	3.6345	1	4396100	+		18971	18155	11960	12015	19261	19261					0.04987857748028546
KAEKWNIFA	9	Unmodified	_KAEKWNIFA_					0	0	0			REV__ENST00000471158.1_1_3:53137921-53154019:-|nuORF	REV__ENST00000471158.1_1_3:53137921-53154019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8019409179688	2	553.803291	1105.59203	-0.40842	-0.00022618	-0.86103	-0.00047684	-1.2694	-0.00070302	553.8024069529012	26.949	0.12707	26.949	26.89	27.017	0					6	4	2	0	0	0	0.61124	1	8530	8530		7.6903	0	1	57826	+		18972	15937	11961	12016	19262	19262					0.0434573571421879
KAELASEK	8	Unmodified	_KAELASEK_					0	0	0			REV__nc|ENSG00000113971|Q7Z494-5|NPHP3	REV__nc|ENSG00000113971|Q7Z494-5|NPHP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.2449951171875	2	438.245275	874.475997	0.25409	0.00011136	-0.69492	-0.00030454	-0.44082	-0.00019319	438.2449222331594	18.992	0.35623	18.992	18.807	19.164	0					14	7	3	0	0	0	0.43813	1	5900	5900		66.429	0	1	436220	+		18973	14060	11962	12017	19263	19263					0.033737921435204044
KAEQVSEVL	9	Unmodified	_KAEQVSEVL_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.77716064453125	2	501.776939	1001.53933	-0.9436	-0.00047348	-0.49783	-0.0002498	-1.4414	-0.00072328	501.7760019735774	32.445	0.34803	32.445	32.342	32.69	0					24	14	3	0	0	0	0.48389	1	10818	10818		34.173	1.3601	1	138930	+		18974	14323	11963	12018	19264	19264					0.038617328607642776
KAERYKPS	8	Unmodified	_KAERYKPS_					0	0	0		nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7747497558594	2	489.771991	977.529429	2.6482	0.001297	2.352	0.0011519	5.0002	0.0024489	489.774395885162	41.339	0.38217	41.339	41.175	41.557	0					18	9	3	0	0	0	0.74405	1	16414	16414		27.882	2.3082	1	222810			18975	3821	11964	12019	19265	19265					0.039765896460380645
KAETGEKLL	9	Unmodified	_KAETGEKLL_					0	0	0		nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	nc|ENSG00000120868|O14727-5|APAF1	nc|ENSG00000120868|O14727-5|APAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7871398925781	2	494.787307	987.560061	2.8136	0.0013921	-1.4641	-0.00072441	1.3496	0.00066774	494.7861347942469	41.308	0.1853	41.308	41.214	41.4	0					6	4	2	0	0	0	0.46194	1	16432	16432		36.447	2.2742	1	54978			18976	180	11965	12020	19266	19266					0.06578323240421469
KAFDKFKK	8	Unmodified	_KAFDKFKK_					0	0	0		ENST00000475065.5_1_7:102953018-102963086:-|nuORF;nc|ENSG00000105821|Q99543-2|DNAJC2;ENSG00000105821|ENST00000379263|DNAJC2	ENST00000475065.5_1_7:102953018-102963086:-|nuORF	ENST00000475065.5_1_7:102953018-102963086:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.30072021484375	2	506.302927	1010.5913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.938	1	14.938	14.438	15.438	0								0	0	0	1.7419	1	3830	3830		74.255	0	1				18977	2399	11966	12021	19267	19267					0.0864294106518173
KAFGLAQRVK	10	Unmodified	_KAFGLAQRVK_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.346923828125	2	559.345658	1116.67676	-0.79972	-0.00044732	2.5718	0.0014385	1.7721	0.0009912	559.3470860834416	21.567	0.15518	21.567	21.516	21.671	0					7	4	2	0	0	0	0.54197	1	6282	6282		40.778	3.6191	1	99936	+		18978	13697	11967	12022	19268	19268					0.12309106250836521
KAFKRSSL	8	Unmodified	_KAFKRSSL_					0	0	0		ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant;ENSG00000197483|ENST00000598519|ZNF628	ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant	ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7848815917969	2	468.784902	935.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.589	1	20.589	20.089	21.089	0								0	0	0	1.7419	1	5775	5775		34.173	0	1				18979	7465	11968	12023	19269	19269					0.08489483888331506
KAFLTSHKG	9	Unmodified	_KAFLTSHKG_					0	0	0		nc|ENSG00000166091|Q96DZ9-4|CMTM5;nc|ENSG00000166091|Q96DZ9-5|CMTM5;nc|ENSG00000166091|Q96DZ9-3|CMTM5;nc|ENSG00000166091|Q96DZ9-6|CMTM5;nc|ENSG00000166091|Q96DZ9-2|CMTM5;CMTM5|p.P126Rfs*55|1|0.17|ENSG00000166091|chr14:23378760-23378760|C/-|frameshift_variant;ENSG00000166091|ENST00000339180|CMTM5	nc|ENSG00000166091|Q96DZ9-4|CMTM5	nc|ENSG00000166091|Q96DZ9-4|CMTM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.1911315917969	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.84	1	20.84	20.34	21.34	0								0	0	0	0.37233	1	5642	5642		19.104	0	1				18980	565	11969	12024	19270	19270					0.05589180025708629
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.2332763671875	3	394.232752	1179.67643	0.57693	0.00022745	0.21212	8.3626E-05	0.78906	0.00031107	394.23299810438425	22.026	0.31	22.026	21.915	22.225	0					17	9	3	0	0	0	0.16018	1	6156	6156		106.68	41.218	1	202920			18981	8013	11970	12025	19271	19271					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.8453369140625	2	590.84549	1179.67643	0.12428	7.3431E-05	-0.049387	-2.918E-05	0.074894	4.4251E-05	590.8453165593567	22.021	0.22274	22.021	21.942	22.165	0					11	6	3	0	0	0	0.17732	1	6152	6152		82.241	27.464	1	130770			18982	8013	11970	12025	19272	19272					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.2327575683594	3	394.232752	1179.67643	0.89627	0.00035334	-0.69716	-0.00027484	0.19911	7.8496E-05	394.2326087798749	22.347	0.80961	22.347	22.209	23.018	0					55	19	6	0	0	0	0.11278	1	7230	7230		138.06	66.185	1	4491400			18983	8013	11970	12025	19273	19273					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.8455810546875	2	590.84549	1179.67643	0.22743	0.00013437	-0.044126	-2.6071E-05	0.1833	0.0001083	590.8453228490945	22.332	0.36622	22.332	22.237	22.604	0					18	8	3	0	0	0	0.0097178	1	7228	7228		143.89	68.843	1	1241200			18984	8013	11970	12025	19274	19274					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.8455200195312	2	590.84549	1179.67643	1.4985	0.00088539	-1.6855	-0.00099588	-0.18699	-0.00011048	590.8444248594416	22.213	0.55814	22.213	22.102	22.66	0					24	11	3	0	0	0	0.0071942	1	7497	7497		157.33	47.209	1	2036700			18985	8013	11970	12025	19275	19275					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.23284912109375	3	394.232752	1179.67643	-0.16173	-6.376E-05	-0.10816	-4.2639E-05	-0.26989	-0.0001064	394.2327971164807	22.119	0.27109	22.119	22.033	22.304	0					10	6	2	0	0	0	0.39566	1	6546	6546		78.264	39.011	1	260480			18986	8013	11970	12025	19276	19276					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	590.8456420898438	2	590.84549	1179.67643	-1.7762	-0.0010495	1.757	0.0010381	-0.019257	-1.1378E-05	590.8464156247765	22.126	0.27013	22.126	22.02	22.29	0					14	6	3	0	0	0	0.2978	1	6541	6541		67.494	17.958	1	155120			18987	8013	11970	12025	19277	19277					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.2328186035156	3	394.232752	1179.67643	-0.65745	-0.00025919	1.185	0.00046716	0.52752	0.00020797	394.23344317291077	22.2	0.71671	22.2	22.089	22.805	0					30	14	4	0	0	0	0.34667	1	7355	7355		93.598	35.351	1	1897800			18988	8013	11970	12025	19278	19278					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;NCEH1-EEF1G|1|fusion	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.2326354980469	3	394.232752	1179.67643	0.42703	0.00016835	-0.73897	-0.00029133	-0.31194	-0.00012298	394.23249951538884	22.231	0.86884	22.231	22.121	22.99	0					41	17	4	0	0	0	0.17732	1	7346	7346		114.89	58.461	1	5113800			18989	8013	11970	12025	19279	19279					0.09377686530956453
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.291015625	2	525.290548	1048.56654	0.67132	0.00035264	0.0086416	4.5393E-06	0.67996	0.00035718	525.2905642031676	14.821	0.14692	14.821	14.752	14.899	0					15	7	3	0	0	0	0.019258	1	3112	3112		123.21	7.7141	1	466730			18990	4671	11971	12026	19280	19280					0.044202611917853574
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2905883789062	2	525.290548	1048.56654	0.096453	5.0666E-05	0.26916	0.00014139	0.36561	0.00019205	525.2906317087718	15.11	0.47983	15.11	15.01	15.49	0					20	11	4	0	0	0	0.0067848	1	3841	3841		150.36	43.354	1	3508000			18991	4671	11971	12026	19281	19281					0.044202611917853574
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2913818359375	2	525.290548	1048.56654	0.57519	0.00030214	0.69854	0.00036694	1.2737	0.00066908	525.2908678690204	14.859	0.20023	14.859	14.778	14.978	0					15	8	3	0	0	0	0.00026591	1	3280	3280		190.26	46.375	1	1081400			18992	4671	11971	12026	19282	19282					0.044202611917853574
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2916870117188	2	525.290548	1048.56654	1.7746	0.00093218	-1.7768	-0.00093333	-0.0022033	-1.1574E-06	525.2894439713053	15.087	0.60742	15.087	14.927	15.534	0					28	12	4	0	0	0	5.5435E-08	1	4045	4045		209.19	81.733	1	13019000			18993	4671	11971	12026	19283	19283					0.044202611917853574
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2909545898438	2	525.290548	1048.56654	1.1719	0.00061561	0.17945	9.4264E-05	1.3514	0.00070988	525.2906338282015	14.895	0.18309	14.895	14.813	14.996	0					21	9	3	0	0	0	0.032383	1	3227	3227		106.68	23.933	1	616850			18994	4671	11971	12026	19284	19284					0.044202611917853574
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2921752929688	2	525.290548	1048.56654	1.627	0.00085467	-1.1152	-0.00058581	0.51185	0.00026887	525.289733565961	15.055	0.46907	15.055	14.945	15.414	0					23	9	4	0	0	0	3.4569E-05	1	3873	3873		199.7	55.818	1	11619000			18995	4671	11971	12026	19285	19285					0.044202611917853574
KAFQRRRR	8	Unmodified	_KAFQRRRR_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3460083007812	2	559.344315	1116.67408	3.4688	0.0019402	-0.41752	-0.00023354	3.0512	0.0017067	559.3440934029246	21.713	0.31602	21.713	21.603	21.919	0					9	6	2	0	0	0	0.41952	1	7120	7120		68.485	68.485	1	1405200			18996	7633	11972	12027	19286	19286					0.1204069563655139
KAFSVQLD	8	Unmodified	_KAFSVQLD_					0	0	0		ENST00000596105.2_1_19:18119032-18119587:+|nuORF;ENST00000593460.1_1_19:18119032-18119587:+|nuORF;ENSG00000105643|ENST00000222250|ARRDC2	ENST00000596105.2_1_19:18119032-18119587:+|nuORF	ENST00000596105.2_1_19:18119032-18119587:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.24749755859375	2	454.247818	906.481082	0.006371	2.894E-06	-0.4052	-0.00018406	-0.39883	-0.00018117	454.2474954098305	27.927	0.2496	27.927	27.847	28.096	0					17	9	3	0	0	0	0.5535	1	8666	8666		54.776	13.998	1	144680			18997	2380	11973	12028	19287	19287					0.024100960061332444
KAFTSSTTLTK	11	Unmodified	_KAFTSSTTLTK_					0	0	0		nc|ENSG00000182903|Q8TF20|ZNF721;ENSG00000182903|ENST00000511833|ZNF721	nc|ENSG00000182903|Q8TF20|ZNF721	nc|ENSG00000182903|Q8TF20|ZNF721	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.829833984375	2	592.829703	1183.64485	0.080991	4.8014E-05	0.0013566	8.0426E-07	0.082347	4.8818E-05	592.8296022409032	21.645	0.11735	21.645	21.587	21.704	0					6	2	3	0	0	0	0.16013	1	7094	7094		79.07	18.952	1	168340			18998	6925	11974	12029	19288	19288					0.06037648986352906
KAFVGAFKK	9	Unmodified	_KAFVGAFKK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.53955078125	3	332.539405	994.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.584	1	20.584	20.084	21.084	0								0	0	0	0.29356	1	5535	5535		36.447	9.3994	1				18999	5386	11975	12030	19289	19289					0.0988724492780193
KAFVGAFKK	9	Unmodified	_KAFVGAFKK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.5393981933594	3	332.539405	994.596387	0.64859	0.00021568	-0.62871	-0.00020907	0.019884	6.6121E-06	332.5391850362486	20.896	0.56332	20.896	20.799	21.362	0					24	13	4	0	0	0	0.037924	1	6567	6567		101.25	47.901	1	1455200			19000	5386	11975	12030	19290	19290					0.0988724492780193
KAFVGAFKK	9	Unmodified	_KAFVGAFKK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.53839111328125	3	332.539405	994.596387	-0.66753	-0.00022198	-1.9665	-0.00065393	-2.634	-0.00087591	332.53875160077985	20.59	0.3233	20.59	20.438	20.761	0					16	10	2	0	0	0	0.44593	1	5766	5766		37.812	2.1932	1	261980			19001	5386	11975	12030	19291	19291					0.0988724492780193
KAFVGAFKK	9	Unmodified	_KAFVGAFKK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.3056640625	2	498.30547	994.596387	-1.1012	-0.00054874	0.38507	0.00019188	-0.71614	-0.00035686	498.30563088348856	20.59	0.23252	20.59	20.498	20.73	0					12	7	3	0	0	0	0.48623	1	5789	5789		42.396	16.946	1	121810			19002	5386	11975	12030	19292	19292					0.0988724492780193
KAFVGAFKK	9	Unmodified	_KAFVGAFKK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.3053283691406	2	498.30547	994.596387	0.17441	8.6911E-05	-1.703	-0.00084862	-1.5286	-0.0007617	498.30464306543684	20.658	0.19267	20.658	20.599	20.792	0					9	4	3	0	0	0	0.40353	1	5859	5859		51.335	17.163	1	169180			19003	5386	11975	12030	19293	19293					0.0988724492780193
KAFVGAFKK	9	Unmodified	_KAFVGAFKK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.539306640625	3	332.539405	994.596387	-0.0066114	-2.1985E-06	-0.10594	-3.523E-05	-0.11256	-3.7429E-05	332.53933650433174	20.802	0.31624	20.802	20.692	21.008	0					13	6	3	0	0	0	0.12834	1	6679	6679		72.879	28.762	1	714170			19004	5386	11975	12030	19294	19294					0.0988724492780193
KAFVGAFKK	9	Unmodified	_KAFVGAFKK_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.5394287109375	3	332.539405	994.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.816	1	20.816	20.316	21.316	0								0	0	0	0.001501	1	6673	6673		124.08	60.774	1				19005	5386	11975	12030	19295	19295					0.0988724492780193
KAGAAARTP	9	Unmodified	_KAGAAARTP_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7456359863281	2	421.745776	841.477	1.054	0.0004445	-1.2018	-0.00050684	-0.14782	-6.2344E-05	421.7452063083829	13.612	0.33074	13.612	13.29	13.621	0					11	7	2	0	0	0	0.26904	1	3188	3188		53.351	9.2347	1	157310			19006	6948	11976	12031	19296	19296					0.04992051303077005
KAGAEVVKQ	9	Unmodified	_KAGAEVVKQ_					0	0	0		ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	ENST00000470377.1_1_1:33256708-33272178:-|nuORF	ENST00000470377.1_1_1:33256708-33272178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.27374267578125	2	465.274367	928.53418	-0.68143	-0.00031705	0.060213	2.8015E-05	-0.62122	-0.00028904	465.2743670960499	12.35	0.17539	12.35	12.265	12.44	0					17	6	4	0	0	0	0.063171	1	2561	2561		90.601	8.2958	1	932940			19007	3935	11977	12032	19297	19297					0.06705473788804284
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7980346679688	2	514.798009	1027.58147	1.1746	0.0006047	-1.0848	-0.00055845	0.089845	4.6252E-05	514.7973717031742	19.364	0.53314	19.364	19.262	19.795	0					34	12	4	0	0	0	0.0025398	1	5815	5815		168.26	72.068	1	11115000			19008	4768	11978	12033	19298	19298					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.798583984375	2	514.798009	1027.58147	-0.14766	-7.6014E-05	1.0686	0.00055013	0.92097	0.00047411	514.7984863913254	19.031	0.2559	19.031	18.965	19.221	0					16	8	3	0	0	0	0.040209	1	5085	5085		93.143	16.369	1	772670			19009	4768	11978	12033	19299	19299					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7982177734375	2	514.798009	1027.58147	0.74288	0.00038243	-0.27473	-0.00014143	0.46815	0.000241	514.7977945972737	19.289	0.71314	19.289	19.18	19.894	0					35	14	5	0	0	0	0.0025398	1	6056	6056		168.26	83.343	1	7515100			19010	4768	11978	12033	19300	19300					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.5344543457031	3	343.534431	1027.58147	1.4698	0.00050492	-1.593	-0.00054724	-0.12321	-4.2326E-05	343.5340605165558	19.272	0.81443	19.272	19.164	19.978	0					32	16	4	0	0	0	0.017741	1	6049	6049		125.71	40.797	1	28729000			19011	4768	11978	12033	19301	19301					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7979125976562	2	514.798009	1027.58147	1.3819	0.00071142	-1.4522	-0.00074762	-0.070302	-3.6191E-05	514.7972158194474	19.272	0.46163	19.272	19.164	19.625	0					18	9	3	0	0	0	0.011893	1	6074	6074		132.76	36.567	1	5889700			19012	4768	11978	12033	19302	19302					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7982177734375	2	514.798009	1027.58147	1.0635	0.00054749	-0.62988	-0.00032426	0.43363	0.00022323	514.7976468125145	19.129	0.35281	19.129	19.033	19.386	0					21	8	4	0	0	0	0.013298	1	5122	5122		117.81	61.09	1	1166600			19013	4768	11978	12033	19303	19303					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.79833984375	2	514.798009	1027.58147	0.67229	0.00034609	0.47214	0.00024306	1.1444	0.00058915	514.7978708678464	19.112	0.44135	19.112	19.021	19.463	0					27	10	5	0	0	0	0.013298	1	5135	5135		129.42	58.126	1	1441900			19014	4768	11978	12033	19304	19304					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.5343933105469	3	343.534431	1027.58147	-0.061699	-2.1196E-05	-0.042064	-1.445E-05	-0.10376	-3.5646E-05	343.5344091380955	19.112	0.34767	19.112	19.021	19.369	0					15	8	3	0	0	0	0.082776	1	5136	5136		83.647	24.865	1	803020			19015	4768	11978	12033	19305	19305					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7981567382812	2	514.798009	1027.58147	0.13863	7.1368E-05	0.27074	0.00013938	0.40937	0.00021074	514.7981409737381	19.253	0.71367	19.253	19.145	19.859	0					32	14	3	0	0	0	0.0046931	1	5902	5902		155.58	81.33	1	15680000			19016	4768	11978	12033	19306	19306					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.534423828125	3	343.534431	1027.58147	1.5342	0.00052706	-1.9445	-0.000668	-0.41027	-0.00014094	343.53389916713553	19.237	1.5633	19.237	19.129	20.692	0					66	31	4	0	0	0	0.0043467	1	5917	5917		160.82	75.906	1	24474000			19017	4768	11978	12033	19307	19307					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7978515625	2	514.798009	1027.58147	1.4897	0.00076688	-1.0135	-0.00052173	0.47621	0.00024515	514.7971909757279	19.236	0.5611	19.236	19.129	19.69	0					33	11	6	0	0	0	0.0046931	1	5918	5918		155.58	59.394	1	16213000			19018	4768	11978	12033	19308	19308					0.06877753059779934
KAGKCVDR	8	Unmodified	_KAGKCVDR_					0	0	0			REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.7391052246094	2	438.739637	875.464721	-0.28139	-0.00012346	-0.45858	-0.0002012	-0.73997	-0.00032465	438.7393287552458	14.555	0.061916	14.555	14.496	14.558	0					4	2	2	0	0	0	0.3961	1	3006	3006		71.296	16.519	1	170050	+		19019	12543	11979	12034	19309	19309					0.02200691568395996
KAGKGPPGR	9	Unmodified	_KAGKGPPGR_					0	0	0		ZDHHC19|p.V270Gfs*83|1|0.18|ENSG00000163958|chr3:196198416-196198416|A/-|frameshift_variant	ZDHHC19|p.V270Gfs*83|1|0.18|ENSG00000163958|chr3:196198416-196198416|A/-|frameshift_variant	ZDHHC19|p.V270Gfs*83|1|0.18|ENSG00000163958|chr3:196198416-196198416|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.2613830566406	2	434.261594	866.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.894	1	13.894	13.394	14.394	0								0	0	0	0.35507	1	3334	3334		24.203	0	1				19020	23134	11980	12035	19310	19310					0.07004044057043757
KAGPGVVRK	9	Unmodified	_KAGPGVVRK_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.29278564453125	2	456.292894	910.571235	0.74792	0.00034127	-0.89028	-0.00040623	-0.14236	-6.4959E-05	456.2923531713225	13.762	0.12787	13.762	13.665	13.793	0					5	3	2	0	0	0	0.30951	1	3211	3211		49.442	10.635	1	89635			19021	2115	11981	12036	19311	19311					0.11237190125223151
KAGPIGILF	9	Unmodified	_KAGPIGILF_					0	0	0		nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1	nc|ENSG00000007062|O43490-5|PROM1	nc|ENSG00000007062|O43490-5|PROM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2847900390625	2	458.286746	914.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.63	1	12.63	12.13	13.13	0								0	0	0	0.34228	1	2735	2735		26.796	3.7536	1				19022	993	11982	12037	19312	19312					0.09824153662191293
KAGPVAIMK	9	Unmodified	_KAGPVAIMK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7779541015625	2	457.778231	913.541908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.121	1	22.121	21.621	22.621	0								0	0	0	0.2591	1	7136	7136		42.396	7.1954	1				19023	6601	11983	12038	19313	19313					0.08167909784731364
KAGTTPSE	8	Unmodified	_KAGTTPSE_					0	0	0			REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF	REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.7012634277344	2	395.7007	789.386848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.191	1	16.191	15.691	16.691	0								0	0	0	1.7419	1	3836	3836		30.504	5.0535	1		+		19024	14701	11984	12039	19314	19314					-0.01627042815994173
KAGVPPVV	8	Unmodified	_KAGVPPVV_					0	0	0			REV__ENSG00000125844|ENST00000377813|RRBP1	REV__ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.7460021972656	2	383.744714	765.474875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.156	1	38.156	37.656	38.656	0								0	0	0	1.7419	1	14979	14979		10.185	0.71421	1		+		19025	14443	11985	12040	19315	19315					0.08275622565281537
KAGWRRVQ	8	Unmodified	_KAGWRRVQ_					0	0	0		ENST00000302472.3_1_5:40680399-40680531:+|nuORF	ENST00000302472.3_1_5:40680399-40680531:+|nuORF	ENST00000302472.3_1_5:40680399-40680531:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.1980285644531	3	334.198154	999.572632	0.37201	0.00012433	-1.019	-0.00034056	-0.64703	-0.00021623	334.19782672126917	15.118	0.073811	15.118	15.052	15.126	0					5	3	2	0	0	0	0.68754	1	3221	3221		45.952	0	1	75126			19026	8498	11986	12041	19316	19316					0.07282824213984895
KAHHQFHMHNW	11	Unmodified	_KAHHQFHMHNW_					0	0	0			REV__ENST00000496123.6_1_11:61571226-61578532:-|nuORF	REV__ENST00000496123.6_1_11:61571226-61578532:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	736.8404541015625	2	736.841279	1471.66801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.953	1	14.953	14.453	15.453	0								0	0	0	0.41312	1	3325	3325		34.173	15.069	1		+		19027	15423	11987	12042	19317	19317					-0.048961906572912994
KAHHVNGL	8	Unmodified	_KAHHVNGL_					0	0	0			REV__GPSM2|p.Y152H|1|0.26|ENSG00000121957|chr1:108897998-108897998|T/C|missense_variant	REV__GPSM2|p.Y152H|1|0.26|ENSG00000121957|chr1:108897998-108897998|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2448425292969	2	438.245944	874.477334	-1.0322	-0.00045237	-0.91176	-0.00039958	-1.944	-0.00085195	438.2455680964101	18.732	0.2119	18.732	18.615	18.827	0					13	7	2	0	0	0	0.64096	1	4927	4927		42.474	10.945	1	92676	+		19028	20704	11988	12043	19318	19318					0.03507471022953723
KAHIANPS	8	Unmodified	_KAHIANPS_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	419.2325134277344	2	419.232502	836.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.478	1	19.478	18.978	19.978	0								0	0	0	1.7419	1	5284	5284		37.159	3.6435	1				19029	4052	11989	12044	19319	19319					0.025683624117505133
KAHLGTAL	8	Unmodified	_KAHLGTAL_					0	0	0		RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant;ENSG00000186468|ENST00000296674|RPS23	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.7452087402344	2	405.745245	809.475937	-0.10739	-4.3575E-05	-0.1133	-4.5969E-05	-0.22069	-8.9544E-05	405.7451810895429	21.025	0.36746	21.025	20.944	21.311	0					22	8	4	0	0	0	0.074434	1	6015	6015		162.31	55.89	1	4030000			19030	7140	11990	12045	19320	19320					0.06357836934171246
KAHLGTAL	8	Unmodified	_KAHLGTAL_					0	0	0		RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant;ENSG00000186468|ENST00000296674|RPS23	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.7451171875	2	405.745245	809.475937	-0.56957	-0.0002311	0.36065	0.00014633	-0.20892	-8.4769E-05	405.7453635751338	21.198	0.21085	21.198	21.093	21.304	0					8	4	3	0	0	0	0.28427	1	6850	6850		87.754	34.403	1	622930			19031	7140	11990	12045	19321	19321					0.06357836934171246
KAHLGTAL	8	Unmodified	_KAHLGTAL_					0	0	0		RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant;ENSG00000186468|ENST00000296674|RPS23	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.74517822265625	2	405.745245	809.475937	3.1229	0.0012671	-3.5278	-0.0014314	-0.40494	-0.0001643	405.7439485409998	21.165	0.36152	21.165	21.059	21.421	0					13	7	2	0	0	0	0.1027	1	6857	6857		167.82	62.556	1	1701000			19032	7140	11990	12045	19322	19322					0.06357836934171246
KAHLGTALK	9	Unmodified	_KAHLGTALK_					0	0	0		RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant;ENSG00000186468|ENST00000296674|RPS23	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.793701171875	2	469.792727	937.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.902	1	16.902	16.402	17.402	0								0	0	0	0.16453	1	3934	3934		56.434	10.462	1				19033	7140	11991	12046	19323	19323					0.09961770405357129
KAHLGTALK	9	Unmodified	_KAHLGTALK_					0	0	0		RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant;ENSG00000186468|ENST00000296674|RPS23	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.79229736328125	2	469.792727	937.5709	0.1966	9.2362E-05	-0.98937	-0.0004648	-0.79277	-0.00037244	469.7922215281409	17.226	0.16959	17.226	17.145	17.314	0					11	4	3	0	0	0	0.035106	1	4816	4816		104.01	39.806	1	649130			19034	7140	11991	12046	19324	19324					0.09961770405357129
KAHLGTALK	9	Unmodified	_KAHLGTALK_					0	0	0		RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant;ENSG00000186468|ENST00000296674|RPS23	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	RPS23|p.N39T|1|0.25|ENSG00000186468|chr5:82277741-82277741|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7924499511719	2	469.792727	937.5709	-0.52981	-0.0002489	-0.18647	-8.7604E-05	-0.71628	-0.0003365	469.79265215541034	17.15	0.16911	17.15	17.09	17.259	0					5	3	2	0	0	0	0.076532	1	4903	4903		85.862	23.754	1	582110			19035	7140	11991	12046	19325	19325					0.09961770405357129
KAIELGYNPV	10	Unmodified	_KAIELGYNPV_					0	0	0		nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1;nc|ENSG00000124615|Q9NZB8-4|MOCS1;nc|ENSG00000124615|Q9NZB8-3|MOCS1;nc|ENSG00000124615|Q9NZB8-6|MOCS1;nc|ENSG00000124615|Q9NZB8-5|MOCS1;nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1	nc|ENSG00000124615|Q9NZB8-8|MOCS1	nc|ENSG00000124615|Q9NZB8-8|MOCS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3085327148438	2	552.308406	1102.60226	0.60858	0.00033613	-0.70489	-0.00038932	-0.096308	-5.3192E-05	552.3080816160582	27.567	0.59649	27.567	27.282	27.879	0					38	14	3	0	0	0	0.55603	1	9578	9578		39.253	3.6345	1	469710			19036	3389	11992	12047	19326	19326					0.055062986488110255
KAIFTVDAK	9	Unmodified	_KAIFTVDAK_					0	0	0		ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;PASK|p.G604Afs*4|1|0.43|ENSG00000115687|chr2:241127104-241127104|C/-|frameshift_variant;PASK|p.H679Pfs*57|1|0.41|ENSG00000115687|chr2:241126879-241126880|-/G|frameshift_variant;nc|ENSG00000115687|Q96RG2-4|PASK	ENSG00000115687|ENST00000234040|PASK	ENSG00000115687|ENST00000234040|PASK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.79742431640625	2	496.792392	991.570232	-0.69522	-0.00034538	2.1307	0.0010585	1.4355	0.00071312	496.79395806691775	29.502	0.7046	29.502	29.109	29.813	0					29	14	4	0	0	0	0.098791	1	10663	10663		79.713	0.26157	1	2084700			19037	2932	11993	12048	19327	19327					0.0741093096565919
KAILTVAAP	9	Unmodified	_KAILTVAAP_					0	0	0			REV__ENST00000360655.8_2_11:19372274-19372361:+|nuORF	REV__ENST00000360655.8_2_11:19372274-19372361:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.28399658203125	2	442.284203	882.553853	0.49501	0.00021894	-0.63031	-0.00027878	-0.1353	-5.9841E-05	442.2839043238909	37.966	0.73836	37.966	37.49	38.228	0					48	24	3	0	0	0	0.37197	1	14774	14774		44.117	4.864	1	253440	+		19038	18558	11994	12049	19328	19328					0.10787849799555715
KAIMGVIRKM	10	Unmodified	_KAIMGVIRKM_					0	0	0			REV__AP3B1|p.S141Kfs*3|1|0.56|ENSG00000132842|chr5:78227486-78227487|-/T|frameshift_variant	REV__AP3B1|p.S141Kfs*3|1|0.56|ENSG00000132842|chr5:78227486-78227487|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.9007568359375	3	382.89984	1145.67769	3.2279	0.001236	-0.74461	-0.00028511	2.4833	0.00095084	382.8995768505156	35.56	0.36716	35.56	35.449	35.817	0					17	7	4	0	0	0	0.65895	1	13752	13752		27.047	2.5281	1	894450	+		19039	12175	11995	12050	19329	19329					0.11067861303899917
KAIPNNKKTP	10	Unmodified	_KAIPNNKKTP_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.8358764648438	2	555.835123	1109.65569	1.7002	0.00094505	0.32127	0.00017857	2.0215	0.0011236	555.8350566222553	21.366	0.20782	21.366	21.215	21.422	0					8	4	2	0	0	0	0.62235	1	6148	6148		31.53	2.3598	1	90484	+		19040	16397	11996	12051	19330	19330					0.10525096151332036
KAIRKPNTV	9	Unmodified	_KAIRKPNTV_					0	0	0			REV__nc|ENSG00000074800|P06733-2|ENO1	REV__nc|ENSG00000074800|P06733-2|ENO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.8851013183594	3	342.885464	1025.63456	-1.9489	-0.00066827	2.7044	0.00092731	0.75548	0.00025904	342.8865018673687	14.655	0.15511	14.655	14.565	14.72	0					10	5	2	0	0	0	0.33044	1	3140	3140		47.657	9.8458	1	47513	+		19041	13221	11997	12052	19331	19331					0.12277130842448969
KAISKEGFK	9	Unmodified	_KAISKEGFK_					0	0	0		tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53424072265625	3	336.53432	1006.58113	-1.9131	-0.00064381	1.4318	0.00048184	-0.48129	-0.00016197	336.53487916533544	18.641	1.5857	18.641	18.501	20.087	0					104	38	5	0	0	0	0.59802	1	5366	5366		16.717	0	1	134120000			19042	22938	11998	12053	19332	19332					0.07810333339955378
KAISQEGLFV	10	Unmodified	_KAISQEGLFV_					0	0	0			REV__RAB6C|p.V24I|1|0.28|ENSG00000222014|chr2:129980185-129980185|G/A|missense_variant	REV__RAB6C|p.V24I|1|0.28|ENSG00000222014|chr2:129980185-129980185|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.30908203125	2	546.308406	1090.60226	0.43241	0.00023623	-2.14	-0.0011691	-1.7076	-0.00093288	546.8079661507444	25.139	0.64538	25.139	24.643	25.289	0					42	15	3	0	0	0	0.60281	1	8484	8484		33.922	1.9668	1	470040	+		19043	21438	11999	12054	19333	19333					0.06058298648804339
KAKDIYDALMT	11	Unmodified	_KAKDIYDALMT_					0	0	0		tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.5576477050781	3	423.556684	1267.64822	0.97047	0.00041105	1.6659	0.0007056	2.6364	0.0011167	423.5573223777901	15.454	0.38038	15.454	15.369	15.75	0					14	9	3	0	0	0	0.50799	1	4004	4004		43.651	7.3331	1	1144000			19044	22882	12000	12055	19334	19334					0.025105757687242658
KAKEKERDTQ	10	Unmodified	_KAKEKERDTQ_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	616.835205078125	2	616.833308	1231.65206	3.0419	0.0018763	-0.22879	-0.00014113	2.8131	0.0017352	616.833171109461	29.625	0.95279	29.625	29.472	30.425	0					56	19	6	0	0	0	0.2978	1	10859	10859		67.494	11.06	1	22024000	+		19045	14742	12001	12056	19335	19335					0.04550381586795993
KAKGVISG	8	Unmodified	_KAKGVISG_					0	0	0		VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000493587.1_1_8:100880383-100883116:+|nuORF	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	380.2401123046875	2	380.239796	758.465038	-2.1445	-0.00081543	2.2683	0.00086251	0.12383	4.7086E-05	380.2406505298742	30.694	0.11951	30.694	30.644	30.764	0					5	3	2	0	0	0	0.77246	1	10488	10488		24.203	2.5004	1	48824			19046	3797	12002	12057	19336	19336					0.07614434559889105
KAKKEHRR	8	Unmodified	_KAKKEHRR_					0	0	0		ENST00000592262.1_1_19:33604586-33621063:+|nuORF;ENSG00000076650|ENST00000170564|GPATCH1	ENST00000592262.1_1_19:33604586-33621063:+|nuORF	ENST00000592262.1_1_19:33604586-33621063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.8272094726562	2	526.825424	1051.63629	3.467	0.0018265	-0.55928	-0.00029464	2.9078	0.0015319	526.8252179766833	13.549	0.33048	13.549	13.275	13.605	0					15	7	3	0	0	0	0.49216	1	3180	3180		60.972	15.02	1	571400			19047	1566	12003	12058	19337	19337					0.11254184651079413
KAKKNANKPL	10	Unmodified	_KAKKNANKPL_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.3516845703125	2	556.35094	1110.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.468	1	11.468	10.968	11.968	0								0	0	0	0.4201	1	2354	2354		10.265	1.5716	1				19048	6922	12004	12059	19338	19338					0.13641088905251308
KAKKPAAAGVK	11	Unmodified	_KAKKPAAAGVK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3499145507812	2	534.848033	1067.68151	1.9311	0.0010328	-0.68374	-0.00036569	1.2473	0.00066713	535.3488258013729	12.459	0.1002	12.459	12.364	12.464	0					5	3	2	0	0	0	0.063642	1	2618	2618		98.582	26.705	1	61920			19049	7010	12005	12060	19339	19339					0.15037990393580003
KAKKPAAAGVK	11	Unmodified	_KAKKPAAAGVK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.8480224609375	2	534.848033	1067.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.471	1	12.471	11.971	12.971	0								0	0	0	0.2814	1	2814	2814		54.722	15.47	1				19050	7010	12005	12060	19340	19340					0.15037990393580003
KAKKPAAAGVK	11	Unmodified	_KAKKPAAAGVK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8486938476562	2	534.848033	1067.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.484	1	12.484	11.984	12.984	0								0	0	0	0.3769	1	2665	2665		41.427	11.109	1				19051	7010	12005	12060	19341	19341					0.15037990393580003
KAKLDKGLE	9	Unmodified	_KAKLDKGLE_					0	0	0		nc|ENSG00000145901|Q15025-3|TNIP1;nc|ENSG00000145901|Q15025-2|TNIP1;ENSG00000145901|ENST00000521591|TNIP1;nc|ENSG00000145901|Q15025-7|TNIP1;nc|ENSG00000145901|Q15025-8|TNIP1;nc|ENSG00000145901|Q15025-5|TNIP1;nc|ENSG00000145901|Q15025-6|TNIP1;nc|ENSG00000145901|Q15025-4|TNIP1	nc|ENSG00000145901|Q15025-3|TNIP1	nc|ENSG00000145901|Q15025-3|TNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3029479980469	2	501.303124	1000.5917	-0.59478	-0.00029817	1.012	0.00050734	0.41727	0.00020918	501.30350668050175	27.918	0.16304	27.918	27.813	27.976	0					5	3	2	0	0	0	0.20551	1	10066	10066		60.972	0	1	178440			19052	4700	12006	12061	19342	19342					0.09142315994381534
KAKLHAAEK	9	Unmodified	_KAKLHAAEK_					0	0	0		nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.3047180175781	2	498.303458	994.592364	0.69069	0.00034418	1.2087	0.0006023	1.8994	0.00094648	498.3039212675876	20.896	0.35806	20.896	20.748	21.106	0					19	8	4	0	0	0	0.15558	1	6566	6566		60.118	8.7828	1	1721700			19053	7453	12007	12062	19343	19343					0.09485155434083481
KAKLHAAEK	9	Unmodified	_KAKLHAAEK_					0	0	0		nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.30487060546875	2	498.303458	994.592364	1.0301	0.0005133	1.6496	0.00082201	2.6797	0.0013353	498.3041267898925	20.819	0.41684	20.819	20.626	21.042	0					21	8	4	0	0	0	0.15558	1	6669	6669		60.118	12.461	1	1258500			19054	7453	12007	12062	19344	19344					0.09485155434083481
KAKLSEPK	8	Unmodified	_KAKLSEPK_					0	0	0			REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7790222167969	2	450.779285	899.544017	-0.49024	-0.00022099	0.096111	4.3325E-05	-0.39413	-0.00017767	450.7793077163266	16.925	0.32741	16.925	16.691	17.018	0					18	8	3	0	0	0	0.62915	1	4659	4659		44.377	5.1244	1	449330	+		19055	13382	12008	12063	19345	19345					0.09022661794176656
KAKMAPGQQA	10	Unmodified	_KAKMAPGQQA_					0	0	0		ARSJ|p.N431Mfs*86|1|0.09|ENSG00000180801|chr4:113902782-113902782|T/-|frameshift_variant	ARSJ|p.N431Mfs*86|1|0.09|ENSG00000180801|chr4:113902782-113902782|T/-|frameshift_variant	ARSJ|p.N431Mfs*86|1|0.09|ENSG00000180801|chr4:113902782-113902782|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.8539733886719	3	343.855176	1028.5437	-1.955	-0.00067224	-1.2613	-0.00043371	-3.2163	-0.0011059	343.8546850272454	20.24	0.19489	20.24	20.158	20.353	0					9	4	3	0	0	0	0.44601	1	5652	5652		51.193	8.3284	1	333860			19056	230	12009	12064	19346	19346					0.03056918802690234
KAKPLFDTK	9	Unmodified	_KAKPLFDTK_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.3135986328125	2	524.313492	1046.61243	1.0102	0.00052965	-0.74026	-0.00038813	0.26992	0.00014152	524.3129346610787	24.222	1.3134	24.222	24.062	25.375	0					65	26	6	0	0	0	0.22837	1	8841	8841		58.23	24.308	1	33557000	+		19057	13293	12010	12065	19347	19347					0.09098906374038052
KAKPPAPLGE	10	Unmodified	_KAKPPAPLGE_					0	0	0			REV__ENSG00000268041|ENST00000597630|ERFL	REV__ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2976989746094	2	504.297842	1006.58113	-0.06266	-3.1599E-05	-0.080591	-4.0642E-05	-0.14325	-7.2241E-05	504.297797297535	27.75	0.4329	27.75	27.606	28.039	0					24	14	3	0	0	0	0.61187	1	8552	8552		32.812	3.6629	1	287250	+		19058	17797	12011	12066	19348	19348					0.0781033333993264
KAKPPAPLGE	10	Unmodified	_KAKPPAPLGE_					0	0	0			REV__ENSG00000268041|ENST00000597630|ERFL	REV__ENSG00000268041|ENST00000597630|ERFL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53448486328125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.812	1	45.812	45.312	46.312	0								0	0	0	0.4201	1	17688	17688		14.086	0	1		+		19059	17797	12011	12066	19349	19349					0.0781033333993264
KAKQLPSKL	9	Unmodified	_KAKQLPSKL_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.8025817871094	2	506.829309	1011.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.706	1	14.706	14.206	15.206	0								0	0	0	0.15687	1	3075	3075		42.396	0	1				19060	148	12012	12067	19350	19350					0.1387089912798274
KAKRERLQS	9	Unmodified	_KAKRERLQS_					0	0	0		nc|ENSG00000100034|P49593-2|PPM1F;ENSG00000100034|ENST00000263212|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.337646484375	2	558.335821	1114.65709	1.8254	0.0010192	1.4462	0.00080749	3.2717	0.0018267	558.3364827097128	18.413	0.36596	18.413	18.206	18.572	0					19	7	4	0	0	0	0.012231	1	5496	5496		136.27	2.4554	1	1884000			19061	1966	12013	12068	19351	19351					0.1043473024008108
KAKRHMEAK	9	Unmodified	_KAKRHMEAK_					0	0	0			REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.878173828125	3	366.878204	1097.61278	0.47291	0.0001735	-0.61238	-0.00022467	-0.13947	-5.1169E-05	366.87808252643737	14.531	0.4961	14.531	14.445	14.941	0					24	12	4	0	0	0	0.1424	1	3566	3566		69.628	21.668	1	1343900	+		19062	12191	12014	12069	19352	19352					0.06788002822236194
KAKRHMEAK	9	Unmodified	_KAKRHMEAK_					0	0	0			REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.21307373046875	3	366.878204	1097.61278	-0.989	-0.00036284	0.83606	0.00030673	-0.15293	-5.6108E-05	367.212805342636	14.254	0.057634	14.254	14.205	14.262	0					4	2	2	0	0	0	0.33044	1	3049	3049		47.657	7.5992	1	112680	+		19063	12191	12014	12069	19353	19353					0.06788002822236194
KAKRHMEAK	9	Unmodified	_KAKRHMEAK_					0	0	0			REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.8780517578125	3	366.878204	1097.61278	1.1605	0.00042574	-1.4027	-0.00051461	-0.24222	-8.8864E-05	366.8778947820802	14.531	0.44332	14.531	14.45	14.893	0					17	9	4	0	0	0	0.1424	1	3785	3785		69.628	9.5094	1	1380100	+		19064	12191	12014	12069	19354	19354					0.06788002822236194
KAKRHMEAK	9	Unmodified	_KAKRHMEAK_					0	0	0			REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	REV__ARCN1|p.R160H|1|0.39|ENSG00000095139|chr11:118583840-118583840|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8150024414062	2	549.813667	1097.61278	1.156	0.00063561	1.0355	0.00056931	2.1915	0.0012049	549.8139581889441	14.314	0.067782	14.314	14.255	14.323	0					4	2	2	0	0	0	0.22837	1	3007	3007		34.173	3.8548	1	63233	+		19065	12191	12014	12069	19355	19355					0.06788002822236194
KAKRQCRN	8	Unmodified	_KAKRQCRN_					0	0	0			REV__nc|nan|Q8WVX3-2|C4orf3	REV__nc|nan|Q8WVX3-2|C4orf3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2821044921875	2	502.282534	1002.55052	-0.92002	-0.00046211	-0.014987	-7.5279E-06	-0.93501	-0.00046964	502.2825270085739	30.78	0.44987	30.78	30.645	31.095	0					50	16	4	0	0	0	0.65276	1	10107	10107		40.573	0	1	2971600	+		19066	21274	12015	12070	19356	19356					0.04934276473909449
KALCALTNRQH	11	Unmodified	_KALCALTNRQH_					0	0	0			REV__TDRD6|p.N917Ifs*2|1|0.35|ENSG00000180113|chr6:46690872-46690872|A/-|frameshift_variant	REV__TDRD6|p.N917Ifs*2|1|0.35|ENSG00000180113|chr6:46690872-46690872|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	628.340576171875	2	627.840413	1253.66627	0.80595	0.00050601	-3.8152	-0.0023953	-3.0092	-0.0018893	628.3400580757582	33.648	0.33551	33.648	33.473	33.808	0					16	12	2	0	0	0	0.42746	1	11288	11288		49.536	1.8787	1	104300	+		19067	16798	12016	12071	19357	19357					0.049587555340849576
KALDFIASK	9	Unmodified	_KALDFIASK_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7923278808594	2	496.792392	991.570232	0.12407	6.1635E-05	-0.24033	-0.0001194	-0.11627	-5.7761E-05	496.79222227295725	29.271	0.27172	29.271	29.16	29.432	0					19	10	3	0	0	0	0.099758	1	9216	9216		79.489	31.573	1	276170			19068	3641;1482	12017	12072	19358	19358					0.07410930965670559
KALDFIASK	9	Unmodified	_KALDFIASK_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.79229736328125	2	496.792392	991.570232	0.71623	0.00035582	-0.83434	-0.00041449	-0.11811	-5.8676E-05	496.7919893130636	29.533	0.42008	29.533	29.364	29.784	0					26	10	4	0	0	0	0.01077	1	10548	10548		139.38	56.632	1	1864100			19069	3641;1482	12017	12072	19359	19359					0.07410930965670559
KALDFIASK	9	Unmodified	_KALDFIASK_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7923889160156	2	496.792392	991.570232	-0.031133	-1.5466E-05	0.77045	0.00038275	0.73932	0.00036729	496.792505232283	29.531	0.67247	29.531	29.162	29.835	0					28	14	4	0	0	0	0.0040239	1	10930	10930		162.64	55.629	1	2796500			19070	3641;1482	12017	12072	19360	19360					0.07410930965670559
KALDFIASK	9	Unmodified	_KALDFIASK_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.79266357421875	2	496.792392	991.570232	-0.073657	-3.6592E-05	-0.31855	-0.00015825	-0.39221	-0.00019485	496.792275077321	29.318	0.26618	29.318	29.223	29.489	0					17	6	4	0	0	0	0.029172	1	9837	9837		109.83	32.512	1	503890			19071	3641;1482	12017	12072	19361	19361					0.07410930965670559
KALDFIASK	9	Unmodified	_KALDFIASK_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7924499511719	2	496.792392	991.570232	-0.69522	-0.00034538	2.1307	0.0010585	1.4355	0.00071312	496.79395806691775	29.502	0.7046	29.502	29.109	29.813	0					29	14	4	0	0	0	0.0066803	1	10807	10807		150.81	52.181	1	2084700			19072	3641;1482	12017	12072	19362	19362					0.07410930965670559
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7870788574219	2	481.78711	961.559667	1.1059	0.0005328	-0.38463	-0.00018531	0.72126	0.0003475	481.7868913029016	28.62	0.17857	28.62	28.545	28.723	0					10	8	2	0	0	0	0.054723	1	8947	8947		93.598	38.821	1	38960			19073	4774	12018	12073	19363	19363					0.07734948311235712
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7882080078125	2	481.78711	961.559667	0.38364	0.00018484	-0.3024	-0.00014569	0.081245	3.9143E-05	481.7869035714779	28.865	0.21556	28.865	28.78	28.996	0					13	5	3	0	0	0	0.082776	1	10239	10239		83.647	28.871	1	336060			19074	4774	12018	12073	19364	19364					0.07734948311235712
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.78704833984375	2	481.78711	961.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.646	1	28.646	28.146	29.146	0								0	0	0	0.11159	1	9257	9257		68.846	19.405	1				19075	4774	12018	12073	19365	19365					0.07734948311235712
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.78656005859375	2	481.78711	961.559667	-0.10476	-5.0474E-05	-0.30444	-0.00014668	-0.40921	-0.00019715	481.7869598524482	28.885	0.25886	28.885	28.778	29.037	0					16	5	4	0	0	0	0.090954	1	10622	10622		81.525	18.219	1	876100			19076	4774	12018	12073	19366	19366					0.07734948311235712
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7867431640625	2	481.78711	961.559667	-0.62184	-0.0002996	-0.22863	-0.00011015	-0.85047	-0.00040975	481.7870564696277	28.817	0.21755	28.817	28.707	28.925	0					12	4	4	0	0	0	0.19952	1	10495	10495		61.691	15.719	1	588230			19077	4774	12018	12073	19367	19367					0.07734948311235712
KALEEEEME	9	Unmodified	_KALEEEEME_					0	0	0		ENSG00000173905|ENST00000470487|GOLIM4	ENSG00000173905|ENST00000470487|GOLIM4	ENSG00000173905|ENST00000470487|GOLIM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2479858398438	2	554.247354	1106.48016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.659	1	16.659	16.159	17.159	0								0	0	0	0.37496	1	3834	3834		18.324	0	1				19078	6459	12019	12074	19368	19368					-0.06882531215728704
KALEVRNKEN	10	Unmodified	_KALEVRNKEN_					0	0	0		ZNF131|p.R145Gfs*26|2|0.25|ENSG00000172262|chr5:43161304-43161304|A/-|frameshift_variant;ZNF131|p.G387Efs*26|2|0.24|ENSG00000172262|chr5:43173415-43173415|A/-|frameshift_variant;nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	ZNF131|p.R145Gfs*26|2|0.25|ENSG00000172262|chr5:43161304-43161304|A/-|frameshift_variant	ZNF131|p.R145Gfs*26|2|0.25|ENSG00000172262|chr5:43161304-43161304|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	600.8360595703125	2	600.838394	1199.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.192	1	36.192	35.692	36.692	0								0	0	0	0.41137	1	11873	11873		27.047	3.5246	1				19079	6354	12020	12075	19369	19369					0.07038989312036392
KALHSSRYF	9	Unmodified	_KALHSSRYF_					0	0	0			REV__ENST00000380882.5_4:85656-87337:+|nuORF	REV__ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.3019409179688	2	554.79854	1107.58253	0.13971	7.751E-05	0.48269	0.00026779	0.6224	0.0003453	555.3005099814617	27.724	0.43647	27.724	27.643	28.079	0					18	15	2	0	0	0	0.22377	1	8870	8870		58.782	4.0596	1	89399	+		19080	17813	12021	12076	19370	19370					0.03303967428701071
KALISKNEF	9	Unmodified	_KALISKNEF_					0	0	0			REV__tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	REV__tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.3067626953125	2	525.303124	1048.5917	3.4427	0.0018085	3.6244	0.0019039	7.0671	0.0037124	525.304912721652	11.19	0.17559	11.19	11.078	11.254	0					14	10	2	0	0	0	0.48389	1	2146	2146		34.173	3.6689	1	72558	+		19081	21895	12022	12077	19371	19371					0.06934315994362805
KALNYLKGGP	10	Unmodified	_KALNYLKGGP_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.2099304199219	3	354.209836	1059.60768	0.71039	0.00025163	-0.89528	-0.00031712	-0.18489	-6.5491E-05	354.20949414282103	30.839	0.18548	30.839	30.742	30.928	0					8	4	2	0	0	0	0.64162	1	11175	11175		29.17	2.4771	1	128270	+		19082	16600	12023	12078	19372	19372					0.0802602223127451
KALQHQIVT	9	Unmodified	_KALQHQIVT_					0	0	0			REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.3086547851562	2	519.308741	1036.60293	0.9791	0.00050846	0.487	0.0002529	1.4661	0.00076136	519.3088971107745	25.48	0.23327	25.48	25.386	25.619	0					12	6	3	0	0	0	0.1424	1	8100	8100		69.628	3.8245	1	339910	+		19083	21774	12024	12079	19373	19373					0.08609138088513646
KALQHQIVT	9	Unmodified	_KALQHQIVT_					0	0	0			REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.3093872070312	2	519.308741	1036.60293	-1.3697	-0.00071129	2.5463	0.0013223	1.1766	0.00061101	519.3101985244608	25.469	0.19418	25.469	25.414	25.608	0					10	5	3	0	0	0	0.48389	1	8109	8109		34.173	1.3601	1	358230	+		19084	21774	12024	12079	19374	19374					0.08609138088513646
KALRKARP	8	Unmodified	_KALRKARP_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;PTPRC|p.N1239Tfs*17|1|0.43|ENSG00000081237|chr1:198755972-198755972|A/-|frameshift_variant;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.3157043457031	2	470.314161	938.613768	2.531	0.0011903	0.077199	3.6308E-05	2.6082	0.0012267	470.3140726077824	42.165	0.20417	42.165	42.053	42.257	0					10	5	3	0	0	0	0.79719	1	16787	16787		18.324	0	1	165730			19085	1658	12025	12080	19375	19375					0.14200585253456666
KALSALFIWP	10	Unmodified	_KALSALFIWP_					0	0	0		ENST00000428239.5_1_1:91973461-91973863:+|nuORF	ENST00000428239.5_1_1:91973461-91973863:+|nuORF	ENST00000428239.5_1_1:91973461-91973863:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	382.8961486816406	3	382.562099	1144.66447	-1.1449	-0.000438	0.34397	0.00013159	-0.80094	-0.00030641	382.56223260113677	20.157	0.18131	20.157	20.085	20.266	0					9	6	2	0	0	0	0.6796	1	5577	5577		24.519	24.519	1	600580			19086	9462	12026	12081	19376	19376					0.09792069787795299
KALSLLAPA	9	Unmodified	_KALSLLAPA_					0	0	0		SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant;nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11;ENST00000520580.5_1_5:65455027-65458421:+|nuORF;SREK1|p.F87Lfs*7|1|0.42|ENSG00000153914|chr5:66162441-66162441|T/-|frameshift_variant;SREK1|p.K241Nfs*34|1|0.42|ENSG00000153914|chr5:66170115-66170115|A/-|frameshift_variant;SREK1|p.K360Nfs*40|1|0.31|ENSG00000153914|chr5:66170886-66170886|A/-|frameshift_variant;ENSG00000153914|ENST00000334121|SREK1	SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2840576171875	2	442.284203	882.553853	-1.122	-0.00049624	0.98353	0.000435	-0.13846	-6.1237E-05	442.2848015733702	37.698	0.44141	37.698	37.479	37.921	0					31	24	2	0	0	0	0.30951	1	12705	12705		49.442	8.6634	1	60639			19087	3003	12027	12082	19377	19377					0.10787849799555715
KALSMSDILA	10	Unmodified	_KALSMSDILA_					0	0	0			REV__XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	REV__XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7885131835938	2	524.788992	1047.56343	1.845	0.00096823	-1.1067	-0.00058079	0.73827	0.00038743	524.7879107017645	38.989	0.11808	38.989	38.897	39.015	0					7	4	2	0	0	0	0.65213	1	14825	14825		27.882	0	1	45192	+		19088	13280	12028	12083	19378	19378					0.041552500228135614
KALTLGIAP	9	Unmodified	_KALTLGIAP_					0	0	0		ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.283935546875	2	442.284203	882.553853	0.49501	0.00021894	-0.63031	-0.00027878	-0.1353	-5.9841E-05	442.2839043238909	37.966	0.73836	37.966	37.49	38.228	0					48	24	3	0	0	0	0.37197	1	14932	14932		44.117	5.3107	1	253440			19089	8671	12029	12084	19379	19379					0.10787849799567084
KALVLTCQQ	9	Unmodified	_KALVLTCQQ_					0	0	0		ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2829895019531	2	502.283877	1002.5532	-2.0749	-0.0010422	-1.6165	-0.00081193	-3.6914	-0.0018541	502.28318064835423	30.774	0.70525	30.774	30.494	31.199	0					55	19	5	0	0	0	0.33044	1	10646	10646		47.657	8.4045	1	2689700			19090	7676	12030	12085	19380	19380					0.052026870882059484
KALWNYLSQ	9	Unmodified	_KALWNYLSQ_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.8008422851562	2	561.800749	1121.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.168	1	21.168	20.668	21.668	0								0	0	0	0.13137	1	6687	6687		64.207	9.4849	1				19091	4032	12031	12086	19381	19381					0.031014318516099593
KALYILTW	8	Unmodified	_KALYILTW_					0	0	0			REV__ENST00000412278.2_3_11:66413513-66413711:+|nuORF	REV__ENST00000412278.2_3_11:66413513-66413711:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53436279296875	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.588	1	22.588	22.088	23.088	0								0	0	0	1.7419	1	6672	6672		26.693	5.0072	1		+		19092	19010	12032	12087	19382	19382					0.08212422833662458
KAMAIKTDVDV	11	Unmodified	_KAMAIKTDVDV_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.8264770507812	2	595.826106	1189.63766	1.3482	0.00080329	-1.1471	-0.00068348	0.20107	0.0001198	595.825285088418	35.444	0.22712	35.444	35.352	35.579	0					12	6	3	0	0	0	0.18431	1	13751	13751		76.17	6.5421	1	190410			19093	3847	12033	12088	19383	19383					0.05042593114308147
KAMEAASSL	9	Unmodified	_KAMEAASSL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2312927246094	2	454.23131	906.448068	-0.35441	-0.00016099	-0.54462	-0.00024739	-0.89904	-0.00040837	454.23093091155727	24.47	0.15292	24.47	24.388	24.541	0					7	4	2	0	0	0	0.063823	1	7218	7218		90.37	8.0648	1	105560			19094	2584	12034	12089	19384	19384					-0.008898541082203337
KAMEAASSL	9	Unmodified	_KAMEAASSL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2311706542969	2	454.23131	906.448068	-0.56034	-0.00025452	-0.13803	-6.2697E-05	-0.69837	-0.00031722	454.23140820912255	24.781	0.17677	24.781	24.687	24.864	0					10	4	3	0	0	0	0.02953	1	8392	8392		109.48	21.724	1	705000			19095	2584	12034	12089	19385	19385					-0.008898541082203337
KAMEAASSL	9	Unmodified	_KAMEAASSL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2315979003906	2	454.23131	906.448068	-2.6253	-0.0011925	2.2011	0.0009998	-0.4242	-0.00019268	454.2325787483268	24.584	0.19443	24.584	24.495	24.689	0					9	4	3	0	0	0	0.085655	1	7676	7676		82.75	17.285	1	266450			19096	2584	12034	12089	19386	19386					-0.008898541082203337
KAMEGIFMK	9	Unmodified	_KAMEGIFMK_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.775146484375	2	527.774831	1053.53511	2.1439	0.0011315	-1.5161	-0.00080014	0.62784	0.00033136	527.7743515236207	30.796	0.39935	30.796	30.566	30.966	0					18	9	3	0	0	0	0.085655	1	11131	11131		82.75	21.779	1	294740			19097	3799	12035	12090	19387	19387					0.01048228841841592
KAMEGIFMK	9	Unmodified	_KAMEGIFMK_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7755126953125	2	527.774831	1053.53511	1.6294	0.00085996	-1.7194	-0.00090745	-0.089995	-4.7497E-05	527.774648434007	30.715	0.45522	30.715	30.474	30.929	0					26	9	5	0	0	0	0.11411	1	11420	11420		76.17	17.388	1	741170			19098	3799	12035	12090	19388	19388					0.01048228841841592
KAMKTNAKA	9	Unmodified	_KAMKTNAKA_					0	0	0			REV__nc|ENSG00000157110|Q93062-4|RBPMS	REV__nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.77606201171875	2	481.776219	961.537886	0.54907	0.00026453	-1.0841	-0.0005223	-0.53505	-0.00025777	481.77581557332024	17.502	0.4062	17.502	17.421	17.828	0					21	10	4	0	0	0	0.30951	1	4944	4944		49.442	1.7842	1	1121000	+		19099	15649	12036	12091	19389	19389					0.05557820291005555
KAMPWALSL	9	Unmodified	_KAMPWALSL_					0	0	0		CST9|p.L17H|1|0.05|ENSG00000173335|chr20:23605815-23605815|A/T|missense_variant;CST9|p.L17_L18insE|1|0.07|ENSG00000173335|chr20:23605813-23605814|-/TTC|inframe_insertion;ENSG00000173335|ENST00000376971|CST9	CST9|p.L17H|1|0.05|ENSG00000173335|chr20:23605815-23605815|A/T|missense_variant	CST9|p.L17H|1|0.05|ENSG00000173335|chr20:23605815-23605815|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7847900390625	2	508.783513	1015.55247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.784	1	39.784	39.284	40.284	0								0	0	0	0.11184	1	15153	15153		68.787	12.066	1				19100	701	12037	12092	19390	19390					0.045318924391494875
KAMQRNKEL	9	Unmodified	_KAMQRNKEL_					0	0	0			REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF	REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.3115234375	2	559.310958	1116.60736	1.2865	0.00071955	-0.18252	-0.00010209	1.104	0.00061746	559.3108314333012	22.021	1.2787	22.021	21.942	23.221	0					90	39	3	0	0	0	0.30841	1	6487	6487		42.396	3.1433	1	1945700	+		19101	20175	12038	12093	19391	19391					0.05372279239782074
KAMTMLTIE	9	Unmodified	_KAMTMLTIE_					0	0	0		nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;ZMYND8|p.K635Sfs*14|1|0.17|ENSG00000101040|chr20:47246328-47246328|T/-|frameshift_variant;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant	nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2741088867188	2	519.272121	1036.52969	1.604	0.00083292	-1.0343	-0.0005371	0.56967	0.00029582	519.2715676975254	18.018	0.80396	18.018	17.915	18.719	0					36	16	5	0	0	0	0.11898	1	5346	5346		58.782	0	1	13063000			19102	2088	12039	12094	19392	19392					0.012885052593674118
KAMVPARSL	9	Unmodified	_KAMVPARSL_					0	0	0		ENST00000376673.7_1_13:98009748-98017404:+|nuORF	ENST00000376673.7_1_13:98009748-98017404:+|nuORF	ENST00000376673.7_1_13:98009748-98017404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7843322753906	2	486.786587	971.558621	-2.9126	-0.0014178	-0.97982	-0.00047696	-3.8924	-0.0018948	486.7860198284117	16.803	0.23289	16.803	16.734	16.967	0					16	6	3	0	0	0	0.12239	1	4047	4047		74.255	2.9593	1	1516600			19103	9043	12040	12095	19393	19393					0.0717041067067612
KAMVRPCVP	9	Unmodified	_KAMVRPCVP_					0	0	0		ENST00000469300.6_1_2:128396858-128397856:-|nuORF	ENST00000469300.6_1_2:128396858-128397856:-|nuORF	ENST00000469300.6_1_2:128396858-128397856:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7751159667969	2	500.775165	999.535777	-0.98994	-0.00049574	0.094162	4.7154E-05	-0.89578	-0.00044858	500.77522811163914	22.696	0.37585	22.696	22.63	23.006	0					31	13	3	0	0	0	0.16524	1	6842	6842		65.803	5.5092	1	315990			19104	9825	12041	12096	19394	19394					0.03599068281550899
KANHENWEEQL	11	Unmodified	_KANHENWEEQL_					0	0	0			REV__ENSG00000100941|ENST00000216832|PNN	REV__ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	699.3238525390625	2	699.325847	1396.63714	-2.2338	-0.0015622	-0.51548	-0.00036049	-2.7493	-0.0019227	699.3254554087613	19.207	0.41384	19.207	19.155	19.569	0					14	9	3	0	0	0	0.33569	1	5764	5764		49.536	6.6718	1	3236900	+		19105	13578	12042	12097	19395	19395					-0.04531110281186557
KANKRSVSSK	10	Unmodified	_KANKRSVSSK_					0	0	0			REV__nc|ENSG00000179776|P33151-2|CDH5	REV__nc|ENSG00000179776|P33151-2|CDH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8301391601562	2	552.827829	1103.64111	3.6547	0.0020204	0.70763	0.0003912	4.3623	0.0024116	552.8281309141964	27.229	0.42308	27.229	27.12	27.543	0					18	8	4	0	0	0	0.080628	1	9732	9732		98.629	98.629	1	1570800	+		19106	12401	12043	12098	19396	19396					0.09343024003192113
KANLTKSQN	9	Unmodified	_KANLTKSQN_					0	0	0		DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2822265625	2	502.28018	1002.54581	2.9267	0.00147	0.45465	0.00022836	3.3814	0.0016984	502.28063959122983	30.957	0.90868	30.957	30.646	31.554	0					71	18	6	0	0	0	0.22837	1	11504	11504		58.23	2.7257	1	13106000			19107	814	12044	12099	19397	19397					0.04463670812140208
KANLTWSVKH	10	Unmodified	_KANLTWSVKH_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.3308715820312	2	592.332747	1182.65094	0.15098	8.9431E-05	-3.1367	-0.001858	-2.9858	-0.0017686	592.3312144034879	16.545	0.14766	16.545	16.458	16.606	0					6	4	2	0	0	0	0.53919	1	3997	3997		44.377	12.847	1	466920			19108	2306	12045	12100	19398	19398					0.06692212008556453
KANNSLQSFY	10	Unmodified	_KANNSLQSFY_					0	0	0			REV__ENSG00000110244|ENST00000357780|APOA4	REV__ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.290771484375	2	586.290745	1170.56694	0.10843	6.3569E-05	0.57354	0.00033626	0.68197	0.00039983	586.2909526270452	33.558	0.2181	33.558	33.449	33.667	0					7	4	2	0	0	0	0.41384	1	12783	12783		54.722	6.8067	1	162210	+		19109	13930	12046	12101	19399	19399					-0.011523638790094992
KANPQVLKK	9	Unmodified	_KANPQVLKK_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.3272094726562	2	513.326934	1024.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.969	1	14.969	14.469	15.469	0								0	0	0	0.001501	1	3765	3765		96.19	48.533	1				19110	11440	12047	12102	19400	19400					0.12798014985219197
KAPAPKAS	8	Unmodified	_KAPAPKAS_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.2320556640625	2	385.231971	768.449388	0.035245	1.3577E-05	0.079505	3.0628E-05	0.11475	4.4205E-05	385.2320262951214	32.013	0.53822	32.013	31.601	32.139	0					23	13	2	0	0	0	0.70055	1	11699	11699		33.516	13.034	1	367770			19111	7279	12048	12103	19401	19401					0.055901480428474315
KAPAPKAS	8	Unmodified	_KAPAPKAS_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.2323303222656	2	385.231971	768.449388	-1.172	-0.00045151	1.525	0.00058748	0.35296	0.00013597	385.2324864304082	31.473	0.19054	31.473	31.4	31.591	0					12	7	2	0	0	0	0.77246	1	10433	10433		24.203	5.8783	1	58828			19112	7279	12048	12103	19402	19402					0.055901480428474315
KAPAPRPSL	9	Unmodified	_KAPAPRPSL_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.78448486328125	2	468.784902	935.55525	-0.12737	-5.9708E-05	-0.31402	-0.00014721	-0.44139	-0.00020692	468.7846647409146	20.839	0.21736	20.839	20.679	20.896	0					10	4	3	0	0	0	0.33044	1	6801	6801		47.657	10.498	1	807250			19113	785	12049	12104	19403	19403					0.08489483888308769
KAPAPRPSL	9	Unmodified	_KAPAPRPSL_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.78466796875	2	468.784902	935.55525	-0.20988	-9.8387E-05	-0.052866	-2.4783E-05	-0.26274	-0.00012317	468.78487428345073	20.669	0.19839	20.669	20.569	20.768	0					7	4	2	0	0	0	0.48389	1	5843	5843		34.173	0.65696	1	123050			19114	785	12049	12104	19404	19404					0.08489483888308769
KAPAPRPSL	9	Unmodified	_KAPAPRPSL_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.78460693359375	2	468.784902	935.55525	-0.51883	-0.00024322	0.065093	3.0515E-05	-0.45374	-0.00021271	468.7848879663208	20.803	0.31624	20.803	20.692	21.008	0					15	6	4	0	0	0	0.10915	1	6676	6676		77.318	18.536	1	1504600			19115	785	12049	12104	19405	19405					0.08489483888308769
KAPEPLSSL	9	Unmodified	_KAPEPLSSL_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7711181640625	2	471.26875	940.522947	-0.41912	-0.00019752	0.32143	0.00015148	-0.097684	-4.6035E-05	471.2687232860157	35.031	0.86126	35.031	34.58	35.442	0					47	39	2	0	0	0	0.11898	1	11487	11487		75.043	14.925	1	84201			19116	1772	12050	12105	19406	19406					0.0503065169467618
KAPEPLSSL	9	Unmodified	_KAPEPLSSL_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.26873779296875	2	471.26875	940.522947	-0.59678	-0.00028124	-0.3639	-0.00017149	-0.96068	-0.00045274	471.2688196234058	35.268	0.98992	35.268	34.8	35.79	0					68	26	5	0	0	0	0.21263	2	13092	13092;13251		60.118	14.146	1	417450			19117	1772	12050	12105	19407;19408	19407					0.0503065169467618
KAPGTNVAM	9	Unmodified	_KAPGTNVAM_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7339782714844	2	444.73402	887.453487	-0.38127	-0.00016957	-0.54534	-0.00024253	-0.92661	-0.0004121	444.73393018395876	22.763	0.25484	22.763	22.633	22.887	0					17	6	4	0	0	0	0.076532	1	7434	7434		85.862	22.883	1	1099000			19118	5044	12051	12106	19409	19409					0.005258694742451553
KAPGTNVAM	9	Unmodified	_KAPGTNVAM_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.733642578125	2	444.73402	887.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.535	1	22.535	22.035	23.035	0								0	0	0	0.095784	1	6729	6729		72.879	20.58	1				19119	5044	12051	12106	19410	19410					0.005258694742451553
KAPKASPAKK	10	Unmodified	_KAPKASPAKK_					0	0	0			REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.3279418945312	2	513.326934	1024.63931	0.091172	4.6801E-05	1.4138	0.00072572	1.5049	0.00077252	513.3277060367029	11.214	0.27219	11.214	11.008	11.281	0					30	16	3	0	0	0	0.11826	1	2123	2123		70.816	5.659	1	215170	+		19120	15609	12052	12107	19411	19411					0.12798014985219197
KAPKASPAKK	10	Unmodified	_KAPKASPAKK_					0	0	0			REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.5537414550781	3	342.553715	1024.63931	1.5443	0.000529	-1.687	-0.0005779	-0.14275	-4.8898E-05	342.55307514338335	11.207	0.20777	11.207	11.036	11.244	0					17	12	2	0	0	0	0.65895	1	2148	2148		27.047	2.8155	1	89636	+		19121	15609	12052	12107	19412	19412					0.12798014985219197
KAPKSPAKAK	10	Unmodified	_KAPKSPAKAK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.326904296875	2	513.326934	1024.63931	0.60545	0.00031079	0.18386	9.4379E-05	0.78931	0.00040517	513.3270420543523	11.212	0.38884	11.212	10.971	11.36	0					23	14	3	0	0	0	0.011683	1	2192	2192		93.598	7.7357	1	292840			19122	6080	12053	12108	19413	19413					0.12798014985219197
KAPKSPAKAK	10	Unmodified	_KAPKSPAKAK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.55419921875	3	342.553715	1024.63931	1.4721	0.00050426	-1.1787	-0.00040377	0.29338	0.0001005	342.5533751460372	11.196	0.17094	11.196	11.064	11.235	0					7	5	2	0	0	0	0.46989	1	2237	2237		48.602	8.7284	1	76593			19123	6080	12053	12108	19414	19414					0.12798014985219197
KAPLAAARAG	10	Unmodified	_KAPLAAARAG_					0	0	0			REV__ENSG00000182118|ENST00000366654|FAM89A	REV__ENSG00000182118|ENST00000366654|FAM89A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2830505371094	2	463.282526	924.550499	-0.70693	-0.00032751	0.10883	5.0419E-05	-0.5981	-0.00027709	463.282590639615	11.617	0.38913	11.617	11.322	11.712	0					40	16	4	0	0	0	0.51121	1	2213	2213		44.117	10.601	1	596120	+		19124	16867	12054	12109	19415	19415					0.08520599745554591
KAPRNLGTT	9	Unmodified	_KAPRNLGTT_					0	0	0		PRRT2|p.G259Vfs*54|1|0.25|ENSG00000167371|chr16:29813825-29813825|G/-|frameshift_variant	PRRT2|p.G259Vfs*54|1|0.25|ENSG00000167371|chr16:29813825-29813825|G/-|frameshift_variant	PRRT2|p.G259Vfs*54|1|0.25|ENSG00000167371|chr16:29813825-29813825|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.27752685546875	2	479.277441	956.540328	-0.26217	-0.00012565	-0.04145	-1.9866E-05	-0.30362	-0.00014552	479.2772236327924	55.6	0.1797	55.6	55.523	55.702	0					14	11	2	0	0	0	0.59802	1	19982	19982		21.96	1.013	1	63436			19125	11978	12055	12110	19416	19416					0.06031992020314192
KAPSAARSL	9	Unmodified	_KAPSAARSL_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7669372558594	2	450.766709	899.518865	0.54315	0.00024484	-0.67634	-0.00030487	-0.13319	-6.0037E-05	450.76640665570085	17.679	0.15511	17.679	17.602	17.757	0					11	4	3	0	0	0	0.37744	1	4254	4254		43.651	2.8726	1	979530			19126	1706	12056	12111	19417	19417					0.06508606991610577
KAPSAARSL	9	Unmodified	_KAPSAARSL_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7667236328125	2	450.766709	899.518865	0.014207	6.4039E-06	-0.50256	-0.00022654	-0.48836	-0.00022013	450.76644204428015	17.668	0.26195	17.668	17.59	17.852	0					19	7	4	0	0	0	0.18416	1	4249	4249		63.534	6.8128	1	2439600			19127	1706	12056	12111	19418	19418					0.06508606991610577
KAPSAARSL	9	Unmodified	_KAPSAARSL_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7664794921875	2	450.766709	899.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.985	1	17.985	17.485	18.485	0								0	0	0	0.14961	1	5177	5177		59.931	3.2097	1				19128	1706	12056	12111	19419	19419					0.06508606991610577
KAPSAARSL	9	Unmodified	_KAPSAARSL_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.766357421875	2	450.766709	899.518865	0.64378	0.0002902	-1.6487	-0.0007432	-1.005	-0.000453	450.7661314185884	18	0.2854	18	17.896	18.182	0					21	6	4	0	0	0	0.22837	1	5173	5173		58.23	6.8945	1	29150000			19129	1706	12056	12111	19420	19420					0.06508606991610577
KAPSAARSL	9	Unmodified	_KAPSAARSL_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7664794921875	2	450.766709	899.518865	-0.10451	-4.7109E-05	-0.92907	-0.00041879	-1.0336	-0.0004659	450.766413199822	17.962	0.67404	17.962	17.853	18.527	0					25	13	5	0	0	0	0.10506	1	5418	5418		78.264	1.4171	1	30162000			19130	1706	12056	12111	19421	19421					0.06508606991610577
KAPSAARSL	9	Unmodified	_KAPSAARSL_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.76617431640625	2	450.766709	899.518865	0.47502	0.00021412	-0.74952	-0.00033786	-0.2745	-0.00012374	450.76638501812755	17.76	0.28581	17.76	17.655	17.941	0					11	6	2	0	0	0	0.098791	1	4486	4486		79.713	5.7379	1	3102300			19131	1706	12056	12111	19422	19422					0.06508606991610577
KAPSAARSL	9	Unmodified	_KAPSAARSL_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7663879394531	2	450.766709	899.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.957	1	17.957	17.457	18.457	0								0	0	0	0.077333	1	5280	5280		78.264	1.4171	1				19132	1706	12056	12111	19423	19423					0.06508606991610577
KAPSRRRR	8	Unmodified	_KAPSRRRR_					0	0	0		ZCCHC2|p.P959Lfs*21|1|0.06|ENSG00000141664|chr18:62574947-62574948|-/CTGTTCCT|frameshift_variant;ENSG00000141664|ENST00000269499|ZCCHC2	ZCCHC2|p.P959Lfs*21|1|0.06|ENSG00000141664|chr18:62574947-62574948|-/CTGTTCCT|frameshift_variant	ZCCHC2|p.P959Lfs*21|1|0.06|ENSG00000141664|chr18:62574947-62574948|-/CTGTTCCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.8245239257812	2	513.823215	1025.63188	3.1933	0.0016408	-0.067701	-3.4786E-05	3.1256	0.001606	513.82322062839	14.861	0.42019	14.861	14.575	14.995	0					25	8	4	0	0	0	0.41701	1	3769	3769		47.916	18.766	1	1048000			19133	4464	12057	12112	19424	19424					0.12008720228163838
KAPVTKVAA	9	Unmodified	_KAPVTKVAA_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1;ENST00000604187.1_1_14:50517346-50518003:+|nuORF	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.7820739746094	2	442.781828	883.549102	0.26172	0.00011588	-0.017965	-7.9546E-06	0.24376	0.00010793	442.78159906158623	16.753	0.11722	16.753	16.69	16.808	0					10	4	3	0	0	0	0.24334	1	3870	3870		56.434	12.057	1	543140			19134	2481	12058	12113	19425	19425					0.10266965656785487
KAPVTKVAA	9	Unmodified	_KAPVTKVAA_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1;ENST00000604187.1_1_14:50517346-50518003:+|nuORF	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7816467285156	2	442.781828	883.549102	0.57847	0.00025614	-0.68843	-0.00030483	-0.10996	-4.8688E-05	442.78133359846174	17.063	0.25479	17.063	16.98	17.235	0					15	6	4	0	0	0	0.085655	1	4739	4739		82.75	22.632	1	3622500			19135	2481	12058	12113	19426	19426					0.10266965656785487
KAPVTKVAA	9	Unmodified	_KAPVTKVAA_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1;ENST00000604187.1_1_14:50517346-50518003:+|nuORF	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.78167724609375	2	442.781828	883.549102	0.40642	0.00017996	-0.20492	-9.0735E-05	0.2015	8.922E-05	442.781544888229	16.825	0.35061	16.825	16.607	16.957	0					15	10	3	0	0	0	0.12834	1	4060	4060		72.879	3.2516	1	278360			19136	2481	12058	12113	19427	19427					0.10266965656785487
KAPVTKVAA	9	Unmodified	_KAPVTKVAA_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1;ENST00000604187.1_1_14:50517346-50518003:+|nuORF	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.7816467285156	2	442.781828	883.549102	-0.51707	-0.00022895	-0.083009	-3.6755E-05	-0.60008	-0.00026571	442.7818397686154	16.809	0.15826	16.809	16.741	16.9	0					8	4	2	0	0	0	0.22837	1	4071	4071		58.23	15.834	1	135050			19137	2481	12058	12113	19428	19428					0.10266965656785487
KAPVTKVAA	9	Unmodified	_KAPVTKVAA_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1;ENST00000604187.1_1_14:50517346-50518003:+|nuORF	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.78155517578125	2	442.781828	883.549102	0.75623	0.00033484	0.41106	0.00018201	1.1673	0.00051685	442.7812669192031	16.98	0.2153	16.98	16.875	17.09	0					15	4	5	0	0	0	0.16806	1	4823	4823		65.465	12.529	1	2072600			19138	2481	12058	12113	19429	19429					0.10266965656785487
KAPVTVTSL	9	Unmodified	_KAPVTVTSL_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2781982421875	2	458.279118	914.543683	-0.41009	-0.00018793	0.085799	3.932E-05	-0.32429	-0.00014861	458.2790947891024	31.178	0.22927	31.178	31.086	31.316	0					20	9	3	0	0	0	0.11898	1	9982	9982		75.043	25.602	1	325930			19139	6369	12059	12114	19430	19430					0.08299242074338053
KAPVTVTSL	9	Unmodified	_KAPVTVTSL_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2788391113281	2	458.279118	914.543683	-0.64505	-0.00029561	0.14969	6.8598E-05	-0.49536	-0.00022701	458.2791543141697	31.487	0.33535	31.487	31.319	31.654	0					21	8	4	0	0	0	0.021961	1	11453	11453		118.74	27.966	1	1866200			19140	6369	12059	12114	19431	19431					0.08299242074338053
KAPVTVTSL	9	Unmodified	_KAPVTVTSL_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.27886962890625	2	458.279118	914.543683	-0.68409	-0.0003135	0.17875	8.1918E-05	-0.50534	-0.00023158	458.27918555961236	31.422	0.23911	31.422	31.316	31.555	0					12	5	3	0	0	0	0.021961	1	11851	11851		118.74	17.142	1	604830			19141	6369	12059	12114	19432	19432					0.08299242074338053
KAQAERDLPDA	11	Unmodified	_KAQAERDLPDA_					0	0	0			REV__ENSG00000170967|ENST00000302259|DDI1	REV__ENSG00000170967|ENST00000302259|DDI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.208984375	3	405.210565	1212.60986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.294	1	13.294	12.794	13.794	0								0	0	0	0.45674	1	3050	3050		19.263	0.73163	1		+		19142	16392	12060	12115	19433	19433					0.012064061784258229
KAQFLNGKAK	10	Unmodified	_KAQFLNGKAK_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.8890075683594	3	368.888986	1103.64513	0.073328	2.705E-05	0.061587	2.2719E-05	0.13492	4.9769E-05	368.88897814532385	17.2	0.069672	17.2	17.134	17.203	0					4	2	2	0	0	0	0.46128	1	4049	4049		49.536	1.8787	1	166190			19143	7593	12061	12116	19434	19434					0.09745113496887825
KAQKELEEQ	9	Unmodified	_KAQKELEEQ_					0	0	0		ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;nc|ENSG00000137710|P35241-4|RDX;nc|ENSG00000137710|P35241-2|RDX	ENSG00000137710|ENST00000645495|RDX	ENSG00000137710|ENST00000645495|RDX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7897338867188	2	551.790578	1101.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.759	1	16.759	16.259	17.259	0								0	0	0	0.11736	1	3877	3877		67.494	1.0644	1				19144	4186	12062	12117	19435	19435					0.01988216401127829
KAQLIYGKS	9	Unmodified	_KAQLIYGKS_					0	0	0			REV__nc|ENSG00000023909|P48507-2|GCLM	REV__nc|ENSG00000023909|P48507-2|GCLM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.939	1	25.939	25.439	26.439	0								0	0	0	0.35377	1	9224	9224		19.263	0	1		+		19145	12949	12063	12118	19436	19436					0.07810333339944009
KAQSLAITK	9	Unmodified	_KAQSLAITK_					0	0	0		nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF	nc|ENSG00000046651|O75665-3|OFD1	nc|ENSG00000046651|O75665-3|OFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2978515625	2	480.297842	958.581131	0.44141	0.00021201	-0.98054	-0.00047095	-0.53913	-0.00025894	480.29743259829047	19.382	0.15359	19.382	19.277	19.43	0					8	3	3	0	0	0	0.0028263	1	5827	5827		169.65	45.572	1	274740			19146	1213	12064	12119	19437	19437					0.10018333339928631
KAQSLAITK	9	Unmodified	_KAQSLAITK_					0	0	0		nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF	nc|ENSG00000046651|O75665-3|OFD1	nc|ENSG00000046651|O75665-3|OFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2976989746094	2	480.297842	958.581131	-0.11105	-5.3336E-05	-0.26449	-0.00012703	-0.37554	-0.00018037	480.29773546772	19.289	0.1665	19.289	19.18	19.347	0					5	3	2	0	0	0	0.13907	1	6081	6081		70.399	23.942	1	368420			19147	1213	12064	12119	19438	19438					0.10018333339928631
KAQTKAPPK	9	Unmodified	_KAQTKAPPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.79815673828125	2	484.798009	967.581465	0.64193	0.0003112	-0.52169	-0.00025291	0.12024	5.8292E-05	484.79743025000477	11.687	0.099629	11.687	11.653	11.753	0					5	3	2	0	0	0	0.33044	1	2311	2311		47.657	0	1	38898			19148	5871	12065	12120	19439	19439					0.09637753059791976
KAQTKAPPK	9	Unmodified	_KAQTKAPPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.79766845703125	2	484.798009	967.581465	0.66173	0.00032081	-1.3022	-0.00063128	-0.64043	-0.00031048	484.79735330339616	11.765	0.18003	11.765	11.65	11.83	0					9	5	2	0	0	0	0.40353	1	2501	2501		41.427	0	1	51227			19149	5871	12065	12120	19440	19440					0.09637753059791976
KAQTKAPPK	9	Unmodified	_KAQTKAPPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7985534667969	2	484.798009	967.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.714	1	11.714	11.214	12.214	0								0	0	0	0.18645	1	2328	2328		52.937	6.9645	1				19150	5871	12065	12120	19441	19441					0.09637753059791976
KAQTKAPPK	9	Unmodified	_KAQTKAPPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7981262207031	2	484.798009	967.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.731	1	11.731	11.231	12.231	0								0	0	0	0.27025	1	2333	2333		40.778	0	1				19151	5871	12065	12120	19442	19442					0.09637753059791976
KAQVYYRA	8	Unmodified	_KAQVYYRA_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7760009765625	2	499.774534	997.534515	1.0735	0.00053649	2.4681	0.0012335	3.5416	0.00177	499.7755072798583	24.471	1.7389	24.471	24.312	26.051	0					61	33	2	0	0	0	0.7126	1	8436	8436		31.955	2.8053	1	2775100			19152	3030	12066	12121	19443	19443					0.035648935086555866
KAQVYYRA	8	Unmodified	_KAQVYYRA_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7762451171875	2	499.774534	997.534515	2.9194	0.0014591	-0.0050318	-2.5148E-06	2.9144	0.0014565	499.77460114692116	24.504	2.0357	24.504	24.246	26.282	0					79	39	3	0	0	0	0.54629	1	8451	8451		55.504	23.549	1	1979200			19153	3030	12066	12121	19444	19444					0.035648935086555866
KAQYGTRIGS	10	Unmodified	_KAQYGTRIGS_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7918701171875	2	540.793455	1079.57236	0.6573	0.00035547	-2.165	-0.0011708	-1.5077	-0.00081535	540.7921202917453	35.767	0.11338	35.767	35.687	35.801	0					4	2	2	0	0	0	0.44292	1	13838	13838		51.528	9.1316	1	92065	+		19154	16331	12067	12122	19445	19445					0.035753597034727136
KARAKVEL	8	Unmodified	_KARAKVEL_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.79241943359375	2	457.792727	913.5709	-0.15299	-7.0037E-05	-0.51733	-0.00023683	-0.67032	-0.00030687	457.7924635278415	20.238	0.11835	20.238	20.178	20.297	0					4	2	2	0	0	0	0.41952	1	6539	6539		68.485	2.6815	1	184810	+		19155	13473	12068	12123	19446	19446					0.11065770405377862
KARCFPKS	8	Unmodified	_KARCFPKS_					0	0	0		ENST00000296509.10_1_4:120980928-120980979:-|nuORF	ENST00000296509.10_1_4:120980928-120980979:-|nuORF	ENST00000296509.10_1_4:120980928-120980979:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7587585449219	2	468.75783	935.501106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.907	1	13.907	13.407	14.407	0								0	0	0	1.7419	1	3492	3492		30.504	5.0535	1				19156	8459	12069	12124	19447	19447					0.030775684651075608
KARELNPIK	9	Unmodified	_KARELNPIK_					0	0	0			REV__nc|ENSG00000066135|O75164-2|KDM4A	REV__nc|ENSG00000066135|O75164-2|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.8308715820312	2	534.82984	1067.64513	2.2318	0.0011936	-1.0311	-0.00055147	1.2007	0.00064215	534.8288000058506	18.26	0.75247	18.26	17.942	18.695	0					54	17	5	0	0	0	0.27249	1	5215	5215		52.937	10.541	1	4778900	+		19157	13124	12070	12125	19448	19448					0.11401113496867765
KARELNPIK	9	Unmodified	_KARELNPIK_					0	0	0			REV__nc|ENSG00000066135|O75164-2|KDM4A	REV__nc|ENSG00000066135|O75164-2|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8304443359375	2	534.82984	1067.64513	0.70843	0.00037889	0.39912	0.00021346	1.1075	0.00059235	534.8300040990781	18.177	0.90094	18.177	17.883	18.784	0					46	18	5	0	0	0	0.07136	1	5331	5331		87.696	2.5356	1	3681300	+		19158	13124	12070	12125	19449	19449					0.11401113496867765
KARGAAATP	9	Unmodified	_KARGAAATP_					0	0	0			REV__HOXA6|p.A76Pfs*68|1|0.31|ENSG00000106006|chr7:27147524-27147524|C/-|frameshift_variant	REV__HOXA6|p.A76Pfs*68|1|0.31|ENSG00000106006|chr7:27147524-27147524|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7457580566406	2	421.745776	841.477	1.0212	0.00043069	-0.999	-0.00042132	0.02221	9.3669E-06	421.74531497441575	13.669	0.18744	13.669	13.49	13.677	0					9	5	2	0	0	0	0.37197	1	3138	3138		44.117	1.7207	1	118640	+		19159	19959	12071	12126	19450	19450					0.04992051303077005
KARIFEPLG	9	Unmodified	_KARIFEPLG_					0	0	0			REV__nc|ENSG00000197893|Q86VF7-4|NRAP	REV__nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.803955078125	2	515.805834	1029.59712	0.033254	1.7153E-05	-3.3127	-0.0017087	-3.2795	-0.0016916	515.8041758292879	20.518	0.37982	20.518	20.419	20.799	0					19	8	4	0	0	0	0.1236	1	6408	6408		73.975	7.5455	1	2288100	+		19160	17364	12072	12127	19451	19451					0.08350039576816926
KARKPVSTT	9	Unmodified	_KARKPVSTT_					0	0	0			REV__ENST00000561203.1_1_15:49308706-49309212:-|nuORF	REV__ENST00000561203.1_1_15:49308706-49309212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.30047607421875	2	494.300916	986.587279	-1.1857	-0.00058611	1.0845	0.00053609	-0.1012	-5.0026E-05	494.30134102260536	54.501	0.28689	54.501	54.41	54.697	0					50	18	4	0	0	0	0.55379	1	16509	16509		26.693	8.4308	1	669040	+		19161	14983	12073	12128	19452	19452					0.09344851571461277
KARKQKGAE	9	Unmodified	_KARKQKGAE_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000546053.1_1_12:6676973-6677084:-|nuORF;ENST00000542015.1_1_12:6669877-6677084:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.3044738769531	2	508.30399	1014.59343	0.10459	5.3164E-05	0.41837	0.00021266	0.52296	0.00026582	508.30418210557065	14.207	0.1407	14.207	14.149	14.29	0					13	7	2	0	0	0	0.43426	1	2968	2968		38.806	1.647	1	138630			19162	2679	12074	12129	19453	19453					0.08671369802993922
KARKQQARK	9	Unmodified	_KARKQQARK_					0	0	0			REV__ENST00000371160.5_1_X:123159712-123164898:+|nuORF	REV__ENST00000371160.5_1_X:123159712-123164898:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.90460205078125	3	371.903629	1112.68906	3.2104	0.0011939	-0.70024	-0.00026042	2.5101	0.00093352	371.9033901689075	18.198	0.26168	18.198	18.092	18.353	0					11	5	3	0	0	0	0.19605	1	5417	5417		62.107	2.1766	1	1532200	+		19163	18650	12075	12130	19454	19454					0.13722142713891117
KARLTPSLP	9	Unmodified	_KARLTPSLP_					0	0	0		nc|ENSG00000092345|Q92904-2|DAZL	nc|ENSG00000092345|Q92904-2|DAZL	nc|ENSG00000092345|Q92904-2|DAZL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	328.2062072753906	3	328.206315	981.597115	0.54988	0.00018047	-0.71295	-0.00023399	-0.16307	-5.352E-05	328.2060659426736	13.322	0.15812	13.322	13.218	13.376	0					5	3	2	0	0	0	0.59802	1	3228	3228		22.58	2.5829	1	456740			19164	11452	12076	12131	19455	19455					0.10558039576847023
KARRRRKM	8	Oxidation (M)	_KARRRRKM(Oxidation (M))_		KARRRRKM(1)		KARRRRKM(48)	0	0	1			REV__nc|ENSG00000109685|O96028-6|NSD2	REV__nc|ENSG00000109685|O96028-6|NSD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.23333740234375	3	373.233092	1116.67745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.607	1	21.607	21.107	22.107	0								0	0	0	1.7419	1	6295	6295		47.916	20.033	1		+		19165	13908	12077	12132	19456	19456		527			0.12377622418898682
KARTQTIL	8	Unmodified	_KARTQTIL_					0	0	0			REV__nc|ENSG00000167881|Q9UHB9-4|SRP68	REV__nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7906799316406	2	465.790184	929.565815	0.070392	3.2788E-05	0.85597	0.0003987	0.92637	0.00043149	465.7905217150083	24.213	0.094894	24.213	24.164	24.259	0					5	3	2	0	0	0	0.58597	1	7114	7114		51.335	10.557	1	73779	+		19166	16221	12078	12133	19457	19457					0.09821466542746293
KARVAFMKL	9	Oxidation (M)	_KARVAFM(Oxidation (M))KL_		KARVAFM(1)KL		KARVAFM(51)KL	0	0	1		tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.322265625	2	540.323337	1078.63212	0.66701	0.0003604	-2.5507	-0.0013782	-1.8837	-0.0010178	540.3216785129491	34.838	0.21347	34.838	34.734	34.947	0					7	4	2	0	0	0	0.2873	1	13405	13405		51.335	10.557	1	190350			19167	22891	12079	12134	19458	19458		824			0.09594959113132973
KARVWCSLVI	10	Unmodified	_KARVWCSLVI_					0	0	0		ENST00000455320.5_2_2:190445193-190446614:-|nuORF	ENST00000455320.5_2_2:190445193-190446614:-|nuORF	ENST00000455320.5_2_2:190445193-190446614:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.22906494140625	3	392.230355	1173.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.729	1	12.729	12.229	13.229	0								0	0	0	0.4146	1	2780	2780		26.063	6.8007	1				19168	9678	12080	12135	19459	19459					0.08934630658905007
KASAGSQAKDK	11	Unmodified	_KASAGSQAKDK_					0	0	0		ENSG00000108551|ENST00000225688|RASD1	ENSG00000108551|ENST00000225688|RASD1	ENSG00000108551|ENST00000225688|RASD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7965087890625	2	545.796195	1089.57784	0.33133	0.00018084	-0.18099	-9.8785E-05	0.15033	8.2052E-05	545.7959855663786	11.244	0.081014	11.244	11.184	11.265	0					6	3	2	0	0	0	0.70609	1	2257	2257		27.047	7.0505	1	107780			19169	2534	12081	12136	19460	19460					0.036630384952559325
KASAVSAIHK	10	Unmodified	_KASAVSAIHK_					0	0	0		ENST00000486107.5_1_3:49946449-49946602:-|nuORF;nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A	ENST00000486107.5_1_3:49946449-49946602:-|nuORF	ENST00000486107.5_1_3:49946449-49946602:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.3014831542969	2	506.300916	1010.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.753	1	14.753	14.253	15.253	0								0	0	0	0.12977	1	3189	3189		61.691	0	1				19170	5649	12082	12137	19461	19461					0.0824085157147465
KASAVSAIHK	10	Unmodified	_KASAVSAIHK_					0	0	0		ENST00000486107.5_1_3:49946449-49946602:-|nuORF;nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A	ENST00000486107.5_1_3:49946449-49946602:-|nuORF	ENST00000486107.5_1_3:49946449-49946602:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.3009033203125	2	506.300916	1010.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.741	1	14.741	14.241	15.241	0								0	0	0	0.17777	1	3183	3183		63.534	26.375	1				19171	5649	12082	12137	19462	19462					0.0824085157147465
KASCELFEVK	10	Unmodified	_KASCELFEVK_					0	0	0			REV__ENSG00000144867|ENST00000678299|SRPRB	REV__ENSG00000144867|ENST00000678299|SRPRB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.3015747070312	2	577.299724	1152.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.392	1	12.392	11.892	12.892	0								0	0	0	0.27346	1	2776	2776		55.084	0.36156	1		+		19172	15249	12083	12138	19463	19463					0.014706350514643418
KASEVFLQR	9	Unmodified	_KASEVFLQR_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.3067626953125	2	539.306198	1076.59784	1.5459	0.00083374	-0.82415	-0.00044447	0.7218	0.00038927	539.305873985885	24.62	0.11423	24.62	24.579	24.693	0					6	3	2	0	0	0	0.53064	1	7305	7305		29.17	2.4771	1	60428			19173	3988	12084	12139	19464	19464					0.06260834225895451
KASEVFLQR	9	Unmodified	_KASEVFLQR_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.3065185546875	2	539.306198	1076.59784	1.9857	0.0010709	-1.142	-0.00061586	0.84379	0.00045506	539.3054390388262	24.944	0.25189	24.944	24.864	25.115	0					12	6	3	0	0	0	0.11411	1	8475	8475		76.17	30.197	1	524350			19174	3988	12084	12139	19465	19465					0.06260834225895451
KASEVFLQR	9	Unmodified	_KASEVFLQR_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.306640625	2	539.306198	1076.59784	0.68512	0.00036949	0.1188	6.4071E-05	0.80392	0.00043356	539.3062800350024	24.845	0.20813	24.845	24.771	24.979	0					11	4	3	0	0	0	0.02429	1	8630	8630		114.89	45.267	1	298650			19175	3988	12084	12139	19466	19466					0.06260834225895451
KASKNLFVT	9	Unmodified	_KASKNLFVT_					0	0	0			REV__nc|ENSG00000211810|P04437|TRAV29DV5	REV__nc|ENSG00000211810|P04437|TRAV29DV5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53424072265625	3	336.53432	1006.58113	-1.9131	-0.00064381	1.4318	0.00048184	-0.48129	-0.00016197	336.53487916533544	18.641	1.5857	18.641	18.501	20.087	0					104	38	5	0	0	0	0.47038	1	5043	5043		35.152	4.8343	1	134120000	+		19176	21202	12085	12140	19467	19467					0.0781033333993264
KASLGIFSK	9	Unmodified	_KASLGIFSK_					0	0	0		OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant;ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1	OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant	OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.78656005859375	2	475.78711	949.559667	-0.11926	-5.6744E-05	-1.8354	-0.00087325	-1.9546	-0.00093	475.7861617537287	26.435	0.26801	26.435	26.326	26.594	0					11	5	3	0	0	0	0.022525	1	9472	9472		117.81	8.3723	1	518110			19177	7226	12086	12141	19468	19468					0.08286948311229025
KASMVSVATK	10	Unmodified	_KASMVSVATK_					0	0	0			REV__ENST00000235382.6_1_1:192781278-192781335:+|nuORF	REV__ENST00000235382.6_1_1:192781278-192781335:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.28900146484375	2	511.289159	1020.56377	0.41161	0.00021045	-0.64869	-0.00033167	-0.23708	-0.00012122	511.28894809723715	17.225	0.11897	17.225	17.166	17.285	0					6	2	3	0	0	0	0.4287	1	5090	5090		53.089	0.15226	1	270480	+		19178	17921	12087	12142	19469	19469					0.054306697426454775
KASSEMALYQK	11	Unmodified	_KASSEMALYQK_					0	0	0		ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L;OXA1L|p.N431Mfs*4|1|0.29|ENSG00000155463|chr14:22771273-22771273|A/-|frameshift_variant;nc|ENSG00000155463|Q15070-2|OXA1L;ENSG00000155463|ENST00000612549|OXA1L	ENST00000473744.5_1_14:23235910-23239613:+|nuORF	ENST00000473744.5_1_14:23235910-23239613:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	628.321044921875	2	628.321188	1254.62782	-0.71483	-0.00044914	0.3178	0.00019968	-0.39702	-0.00024946	628.3212087332811	23.031	0.1271	23.031	22.971	23.098	0					6	4	2	0	0	0	0.60833	1	6858	6858		36.318	3.5671	1	114540			19179	5125	12088	12143	19470	19470					0.010694051089103596
KASSEMALYQK	11	Unmodified	_KASSEMALYQK_					0	0	0		ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L;OXA1L|p.N431Mfs*4|1|0.29|ENSG00000155463|chr14:22771273-22771273|A/-|frameshift_variant;nc|ENSG00000155463|Q15070-2|OXA1L;ENSG00000155463|ENST00000612549|OXA1L	ENST00000473744.5_1_14:23235910-23239613:+|nuORF	ENST00000473744.5_1_14:23235910-23239613:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	628.3212890625	2	628.321188	1254.62782	1.4121	0.00088722	-2.1589	-0.0013565	-0.74687	-0.00046927	628.3202037956211	23.204	0.41837	23.204	23.095	23.513	0					9	8	2	0	0	0	0.004134	1	7977	7977		128.35	51.03	1	868130			19180	5125	12088	12143	19471	19471					0.010694051089103596
KASSEMALYQK	11	Unmodified	_KASSEMALYQK_					0	0	0		ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L;OXA1L|p.N431Mfs*4|1|0.29|ENSG00000155463|chr14:22771273-22771273|A/-|frameshift_variant;nc|ENSG00000155463|Q15070-2|OXA1L;ENSG00000155463|ENST00000612549|OXA1L	ENST00000473744.5_1_14:23235910-23239613:+|nuORF	ENST00000473744.5_1_14:23235910-23239613:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	628.822265625	2	628.321188	1254.62782	0.3248	0.00020408	-0.61958	-0.00038929	-0.29478	-0.00018522	628.8220416076811	23.038	0.10138	23.038	22.992	23.094	0					4	2	2	0	0	0	0.17294	1	6977	6977		77.533	20.901	1	67559			19181	5125	12088	12143	19472	19472					0.010694051089103596
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2894287109375	2	473.290017	944.565481	-0.022054	-1.0438E-05	-0.10034	-4.7489E-05	-0.12239	-5.7927E-05	473.2899968663251	13.052	0.080084	13.052	12.994	13.074	0					5	3	2	0	0	0	0.41958	1	2536	2536		40.058	2.2467	1	80592			19182	2324	12089	12144	19473	19473					0.09098046822896322
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2896423339844	2	473.290017	944.565481	0.2476	0.00011719	-0.8079	-0.00038237	-0.5603	-0.00026519	473.2895845133452	13.342	0.48185	13.342	13.046	13.527	0					23	13	3	0	0	0	0.022525	1	2992	2992		117.81	21.996	1	848070			19183	2324	12089	12144	19474	19474					0.09098046822896322
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2899169921875	2	473.290017	944.565481	-0.122	-5.7742E-05	-0.7286	-0.00034484	-0.8506	-0.00040258	473.28976443879145	13.305	0.24733	13.305	13.159	13.406	0					13	5	3	0	0	0	0.095583	1	3175	3175		80.455	16.247	1	306280			19184	2324	12089	12144	19475	19475					0.09098046822896322
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2899169921875	2	473.290017	944.565481	-0.50543	-0.00023922	-0.19229	-9.1008E-05	-0.69772	-0.00033022	473.29026334185323	13.092	0.11274	13.092	12.991	13.103	0					7	5	2	0	0	0	0.37744	1	2608	2608		43.651	0.78652	1	55227			19185	2324	12089	12144	19476	19476					0.09098046822896322
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2895202636719	2	473.290017	944.565481	-0.58174	-0.00027533	-0.14375	-6.8033E-05	-0.72548	-0.00034336	473.2898969002531	13.31	0.3477	13.31	13.018	13.366	0					17	7	3	0	0	0	0.19952	1	3005	3005		61.691	15.719	1	411820			19186	2324	12089	12144	19477	19477					0.09098046822896322
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.28973388671875	2	473.290017	944.565481	0.65145	0.00030832	-0.97685	-0.00046233	-0.32541	-0.00015401	473.28961033372474	13.297	0.43259	13.297	13.049	13.481	0					16	9	2	0	0	0	0.082776	1	3062	3062		83.647	19.44	1	530720			19187	2324	12089	12144	19478	19478					0.09098046822896322
KASVIEMF	8	Unmodified	_KASVIEMF_					0	0	0		nc|ENSG00000205221|Q6UXI7-3|VIT;nc|ENSG00000205221|Q6UXI7-2|VIT;nc|ENSG00000205221|Q6UXI7-5|VIT;nc|ENSG00000205221|Q6UXI7|VIT;ENSG00000205221|ENST00000379242|VIT	nc|ENSG00000205221|Q6UXI7-3|VIT	nc|ENSG00000205221|Q6UXI7-3|VIT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.745849609375	2	462.746596	923.478639	-0.96791	-0.0004479	-0.72912	-0.0003374	-1.697	-0.0007853	462.74617729268743	17.979	0.16815	17.979	17.87	18.038	0					7	3	3	0	0	0	0.68754	1	5447	5447		35.201	6.9464	1	558200			19188	7740	12090	12145	19479	19479					0.01383924276842663
KASVQYVVA	9	Unmodified	_KASVQYVVA_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7766418457031	2	482.776742	963.538931	-0.10118	-4.8845E-05	-0.77158	-0.0003725	-0.87275	-0.00042134	482.7765545344133	20.839	0.41639	20.839	20.579	20.995	0					13	8	2	0	0	0	0.098791	1	6829	6829		79.713	18.741	1	217550			19189	1904	12091	12146	19480	19480					0.05570357931560466
KASYSGVSL	9	Unmodified	_KASYSGVSL_					0	0	0		ENSG00000011465|ENST00000052754|DCN;nc|ENSG00000011465|P07585-4|DCN;nc|ENSG00000011465|P07585-3|DCN;nc|ENSG00000011465|P07585-2|DCN	ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.2448425292969	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.333	1	30.333	29.833	30.833	0								0	0	0	0.19847	1	9656	9656		51.193	17.02	1				19190	1052	12092	12147	19481	19481					0.01717792143540464
KATDSSDPLK	10	Unmodified	_KATDSSDPLK_					0	0	0		nc|ENSG00000072756|Q96Q11-2|TRNT1;TRNT1|p.S418Vfs*11|1|0.4|ENSG00000072756|chr3:3148095-3148095|A/-|frameshift_variant;ENSG00000072756|ENST00000251607|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2785034179688	2	531.277303	1060.54005	0.38986	0.00020712	1.348	0.00071616	1.7378	0.00092328	531.277960096987	16.26	0.082731	16.26	16.21	16.292	0					7	4	2	0	0	0	0.48965	1	3663	3663		46.457	0.48454	1	75493			19191	1499	12093	12148	19482	19482					0.012205275098040147
KATEHLSTL	9	Unmodified	_KATEHLSTL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.277099609375	2	500.277106	998.53966	-0.048207	-2.4117E-05	0.0054524	2.7277E-06	-0.042755	-2.1389E-05	500.2771330324128	21.711	0.13131	21.711	21.64	21.771	0					7	4	2	0	0	0	0.0406	1	6014	6014		98.629	37.657	1	245790			19192	3063	12094	12149	19483	19483					0.04033152580609567
KATEHLSTL	9	Unmodified	_KATEHLSTL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.27691650390625	2	500.277106	998.53966	-1.0157	-0.00050811	1.0277	0.00051415	0.012077	6.0421E-06	500.27769445873594	21.753	0.1895	21.753	21.635	21.825	0					8	5	2	0	0	0	0.048471	1	6285	6285		95.815	34.843	1	576340			19193	3063	12094	12149	19484	19484					0.04033152580609567
KATEPLRS	8	Unmodified	_KATEPLRS_					0	0	0		TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant;TSHZ2|p.M819*|2|0.51|ENSG00000182463|chr20:53255906-53255906|C/-|frameshift_variant;TSHZ2|p.M819Hfs*11|1|0.25|ENSG00000182463|chr20:53255905-53255906|-/C|frameshift_variant;nc|ENSG00000182463|Q9NRE2-2|TSHZ2;ENSG00000182463|ENST00000371497|TSHZ2	TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.25836181640625	2	451.258717	900.50288	-0.10742	-4.8473E-05	-1.0544	-0.0004758	-1.1618	-0.00052427	451.2584667469863	12.2	0.097622	12.2	12.11	12.208	0					4	2	2	0	0	0	0.5676	1	2678	2678		53.351	0	1	78043			19194	6896	12095	12150	19485	19485					0.04864900754705559
KATGAATPK	9	Unmodified	_KATGAATPK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.74822998046875	2	422.747985	843.481417	-0.21622	-9.1408E-05	-0.10636	-4.4964E-05	-0.32258	-0.00013637	422.7479969335003	11.752	0.45466	11.752	11.553	12.008	0					23	13	3	0	0	0	0.085655	1	2457	2457		82.75	11.455	1	513230			19195	6080	12096	12151	19486	19486					0.05341515726001944
KATGAATPKK	10	Unmodified	_KATGAATPKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7958679199219	2	486.795466	971.57638	0.70389	0.00034265	0.025981	1.2647E-05	0.72987	0.0003553	486.79555143468417	11.067	0.12928	11.067	10.974	11.103	0					13	7	2	0	0	0	0.21577	1	2093	2093		77.533	5.6558	1	101290			19196	6080	12097	12152	19487	19487					0.08945449197187827
KATGAATPKK	10	Unmodified	_KATGAATPKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7958984375	2	486.795466	971.57638	-0.085019	-4.1387E-05	0.39096	0.00019032	0.30594	0.00014893	486.79566181446097	11.11	0.27952	11.11	10.939	11.219	0					19	10	3	0	0	0	0.13663	1	2162	2162		89.029	4.1133	1	309330			19197	6080	12097	12152	19488	19488					0.08945449197187827
KATGAATPKK	10	Unmodified	_KATGAATPKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.79534912109375	2	486.795466	971.57638	0.63828	0.00031071	-0.94605	-0.00046053	-0.30777	-0.00014982	486.7950613860849	11.094	0.23813	11.094	10.966	11.204	0					13	8	2	0	0	0	0.049666	1	2168	2168		109.44	29.726	1	408420			19198	6080	12097	12152	19489	19489					0.08945449197187827
KATGAATPKK	10	Unmodified	_KATGAATPKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.86590576171875	3	324.86607	971.57638	1.5177	0.00049306	-1.5094	-0.00049035	0.0083333	2.7072E-06	324.8653889357823	11.066	0.11595	11.066	10.986	11.102	0					6	4	2	0	0	0	0.44292	1	2187	2187		63.694	1.9295	1	81916			19199	6080	12097	12152	19490	19490					0.08945449197187827
KATGAATPKK	10	Unmodified	_KATGAATPKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7965087890625	2	486.795466	971.57638	-0.54686	-0.00026621	1.151	0.00056029	0.60411	0.00029408	486.7960328586405	11.104	0.20733	11.104	10.976	11.183	0					14	12	2	0	0	0	0.18814	1	2119	2119		80.916	27.98	1	105280			19200	6080	12097	12152	19491	19491					0.08945449197187827
KATGAATPKK	10	Unmodified	_KATGAATPKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7957763671875	2	486.795466	971.57638	0.82077	0.00039955	-0.19176	-9.3349E-05	0.62901	0.0003062	486.795492170187	11.103	0.17149	11.103	10.97	11.142	0					15	10	2	0	0	0	0.4947	1	2106	2106		45.908	11.736	1	118870			19201	6080	12097	12152	19492	19492					0.08945449197187827
KATGGARLLSG	11	Unmodified	_KATGGARLLSG_					0	0	0			REV__ENST00000356387.6_1_7:102092453-102092639:+|nuORF	REV__ENST00000356387.6_1_7:102092453-102092639:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.803955078125	2	515.803823	1029.59309	0.23117	0.00011924	0.19812	0.00010219	0.42929	0.00022143	515.8039126934113	20.166	0.12186	20.166	20.092	20.214	0					10	4	3	0	0	0	0.17474	1	5356	5356		77.318	6.0219	1	356920	+		19202	18520	12098	12153	19493	19493					0.07947950083121214
KATGKLIAQG	10	Unmodified	_KATGKLIAQG_					0	0	0		nc|ENSG00000112304|Q9NPJ3-2|ACOT13;ENSG00000112304|ENST00000230048|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.80560302734375	2	493.803291	985.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.364	1	43.364	42.864	43.864	0								0	0	0	0.24873	1	16363	16363		58.23	8.7884	1				19203	2733	12099	12154	19494	19494					0.09865735714231505
KATKLIPN	8	Unmodified	_KATKLIPN_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7632141113281	2	442.781828	883.549102	-0.26279	-0.00011636	-0.56532	-0.00025032	-0.82812	-0.00036668	442.78165440505506	18.805	0.28873	18.805	18.611	18.9	0					11	6	2	0	0	0	0.63077	1	5808	5808		44.117	5.3107	1	110230			19204	5134;11594	12100	12155	19495	19495					0.10266965656796856
KATKSPAKPK	10	Unmodified	_KATKSPAKPK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.3314819335938	2	528.332216	1054.64988	2.1885	0.0011563	-0.72971	-0.00038553	1.4588	0.00077074	528.3315659100058	10.866	0.17683	10.866	10.724	10.9	0					9	5	2	0	0	0	0.4737	1	2056	2056		43.651	8.0325	1	77406			19205	7010	12101	12156	19496	19496					0.12473997639654044
KATKSPAKPK	10	Unmodified	_KATKSPAKPK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.8348388671875	2	528.332216	1054.64988	1.7482	0.00092363	-0.35137	-0.00018564	1.3968	0.00073799	528.3319601055753	10.891	0.24107	10.891	10.682	10.923	0					12	6	2	0	0	0	0.35956	1	2107	2107		48.602	4.4848	1	267410			19206	7010	12101	12156	19497	19497					0.12473997639654044
KATKSPAKPK	10	Unmodified	_KATKSPAKPK_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3319091796875	2	528.332216	1054.64988	1.6289	0.00086057	0.58929	0.00031134	2.2181	0.0011719	528.3324823376041	10.879	0.087383	10.879	10.809	10.897	0					10	5	2	0	0	0	0.34614	1	2066	2066		58.246	24.325	1	86535			19207	7010	12101	12156	19498	19498					0.12473997639654044
KATMLFFHFL	10	Unmodified	_KATMLFFHFL_					0	0	0		ENST00000556140.5_1_12:56748997-56753873:-|nuORF;ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2	ENST00000556140.5_1_12:56748997-56753873:-|nuORF;ENSG00000170581|ENST00000314128|STAT2	ENST00000556140.5_1_12:56748997-56753873:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	627.837158203125	2	627.83882	1253.66309	-2.1475	-0.0013483	1.0122	0.00063549	-1.1353	-0.00071278	627.8394117821831	33.541	0.44355	33.541	33.404	33.848	0					21	12	2	0	0	0	0.62235	1	11801	11801		31.53	3.4483	1	108290			19208	10663;6246	12102	12157	19499	19499					0.046401124273870664
KATRATFPVT	10	Unmodified	_KATRATFPVT_					0	0	0			REV__nc|ENSG00000157827|Q96PY5|FMNL2	REV__nc|ENSG00000157827|Q96PY5|FMNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.314208984375	2	546.314023	1090.61349	0.42786	0.00023375	-0.68921	-0.00037653	-0.26135	-0.00014278	546.3135707482389	31.041	2.2142	31.041	30.905	33.119	0					165	55	5	0	0	0	0.35046	1	11570	11570		61.691	1.573	1	92143000	+		19209	21081	12103	12158	19500	19500					0.07181120742939129
KATRATFPVT	10	Unmodified	_KATRATFPVT_					0	0	0			REV__nc|ENSG00000157827|Q96PY5|FMNL2	REV__nc|ENSG00000157827|Q96PY5|FMNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3140258789062	2	546.314023	1090.61349	0.33485	0.00018293	-0.40937	-0.00022365	-0.074523	-4.0713E-05	546.313703585964	31.02	1.8783	31.02	30.88	32.759	0					106	42	5	0	0	0	0.2538	1	11810	11810		72.879	0.63601	1	45109000	+		19210	21081	12103	12158	19501	19501					0.07181120742939129
KATRGLFEGTT	11	Unmodified	_KATRGLFEGTT_					0	0	0			REV__ATP1B3|p.Q63Wfs*7|1|0.04|ENSG00000069849|chr3:141903696-141903697|-/TGGC|frameshift_variant	REV__ATP1B3|p.Q63Wfs*7|1|0.04|ENSG00000069849|chr3:141903696-141903697|-/TGGC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.3236083984375	2	590.81967	1179.62479	3.1809	0.0018794	0.74843	0.00044219	3.9294	0.0023215	590.8201415889408	43.142	0.33378	43.142	43.051	43.385	0					29	11	4	0	0	0	0.38515	1	17246	17246		53.089	15.277	1	905130	+		19211	12254	12104	12159	19502	19502					0.042158980464364504
KATSIAAP	8	Unmodified	_KATSIAAP_					0	0	0			REV__ENSG00000052749|ENST00000370992|RRP12	REV__ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.72381591796875	2	379.723978	757.433404	0.22804	8.6591E-05	-0.48273	-0.0001833	-0.2547	-9.6714E-05	379.7237742914202	21.483	0.46793	21.483	21.374	21.842	0					18	9	2	0	0	0	0.60719	1	7119	7119		47.916	10.756	1	334110	+		19212	13040	12105	12160	19503	19503					0.044984418059470954
KATTAAPYL	9	Unmodified	_KATTAAPYL_					0	0	0			REV__nc|ENSG00000161649|Q6UXG3-5|CD300LG	REV__nc|ENSG00000161649|Q6UXG3-5|CD300LG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.26385498046875	2	468.263468	934.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.39	1	45.39	44.89	45.89	0								0	0	0	0.24724	1	16896	16896		44.117	5.3107	1		+		19213	15784	12106	12161	19504	19504					0.04250669040231969
KATTQNILNK	10	Unmodified	_KATTQNILNK_					0	0	0			REV__ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant	REV__ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.8305053710938	2	565.830037	1129.64552	1.9134	0.0010827	-1.3626	-0.00077098	0.55088	0.0003117	565.8292574003137	11.837	0.13462	11.837	11.734	11.868	0					5	4	2	0	0	0	0.73511	1	2527	2527		16.007	0.67366	1	64574	+		19214	12194	12107	12162	19505	19505					0.0858848842608495
KAVASLTPKG	10	Unmodified	_KAVASLTPKG_					0	0	0			REV__PCDH17|p.N765Mfs*16|1|0.55|ENSG00000118946|chr13:57634836-57634836|A/-|frameshift_variant	REV__PCDH17|p.N765Mfs*16|1|0.55|ENSG00000118946|chr13:57634836-57634836|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.5343322753906	3	324.53432	970.581131	0.55807	0.00018111	-0.51355	-0.00016666	0.04452	1.4448E-05	324.5341454990463	19.701	0.46594	19.701	19.495	19.961	0					17	9	4	0	0	0	0.49411	1	6282	6282		42.338	0	1	3955400	+		19215	14229	12108	12163	19506	19506					0.09466333339935318
KAVCCVPT	8	2 Carbamidomethyl (C)	_KAVC(Carbamidomethyl (C))C(Carbamidomethyl (C))VPT_	KAVC(1)C(1)VPT		KAVC(48)C(48)VPT		0	2	0		ENSG00000205445|ENST00000391621|KRTAP10-2	ENSG00000205445|ENST00000391621|KRTAP10-2	ENSG00000205445|ENST00000391621|KRTAP10-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.72772216796875	2	467.72788	933.441208	-0.64915	-0.00030362	-0.58885	-0.00027542	-1.238	-0.00057904	467.72803550060445	18.759	0.37684	18.759	18.588	18.965	0					22	10	5	0	0	0	0.60719	1	5532	5532		47.916	10.104	1	2597300			19216	7752	12109	12164	19507	19507	335;336				-0.02817490260440536
KAVDSLVKK	9	Unmodified	_KAVDSLVKK_					0	0	0		SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant;nc|ENSG00000120693|O15198-2|SMAD9;ENSG00000120693|ENST00000379826|SMAD9	SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.31280517578125	2	494.313492	986.612431	-0.05237	-2.5887E-05	-0.612	-0.00030252	-0.66437	-0.0003284	494.3132718522073	25.733	0.10805	25.733	25.648	25.756	0					5	3	2	0	0	0	0.2873	1	7776	7776		51.335	5.3835	1	39492			19217	3183	12110	12165	19508	19508					0.11858906374050093
KAVEKQQP	8	Unmodified	_KAVEKQQP_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2659606933594	2	464.266542	926.51853	0.69197	0.00032126	-1.012	-0.00046982	-0.32	-0.00014856	464.2658927704521	11.47	0.32695	11.47	11.336	11.663	0					13	9	2	0	0	0	0.68432	1	2366	2366		35.618	1.4457	1	189670			19218	5871	12111	12166	19509	19509					0.052331872717559236
KAVGAIGG	8	Unmodified	_KAVGAIGG_					0	0	0		tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.7052917480469	2	336.705589	671.396624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.684	1	16.684	16.184	17.184	0								0	0	0	1.7419	1	4050	4050		10.185	0	1				19219	22952	12112	12167	19510	19510					0.04778189980061143
KAVKKTPKKA	10	Unmodified	_KAVKKTPKKA_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8723754882812	2	549.871508	1097.72846	1.712	0.0009414	0.3415	0.00018778	2.0535	0.0011292	549.8714844702579	10.808	0.15577	10.808	10.682	10.838	0					4	2	2	0	0	0	0.13663	1	2095	2095		89.029	7.5038	1	119830			19220	7010	12113	12168	19511	19511					0.18350849944749825
KAVKKTPKKA	10	Unmodified	_KAVKKTPKKA_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8732299804688	2	549.871508	1097.72846	0.56291	0.00030953	1.1333	0.00062318	1.6962	0.00093271	549.8726212668173	10.806	0.12859	10.806	10.691	10.82	0					4	2	2	0	0	0	0.48965	1	2053	2053		46.457	11.305	1	33418			19221	7010	12113	12168	19512	19512					0.18350849944749825
KAVKKTPKKA	10	Unmodified	_KAVKKTPKKA_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3746337890625	2	549.871508	1097.72846	1.821	0.0010013	0.10348	5.6901E-05	1.9245	0.0010582	550.3734251636266	10.804	0.12863	10.804	10.686	10.815	0					4	2	2	0	0	0	0.14151	1	2051	2051		88.177	13.134	1	43087			19222	7010	12113	12168	19513	19513					0.18350849944749825
KAVKRPNE	8	Unmodified	_KAVKRPNE_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7779235839844	2	471.279983	940.545414	-0.12417	-5.8519E-05	-0.62762	-0.00029578	-0.75179	-0.0003543	471.27976329380004	19.042	0.51333	19.042	18.883	19.396	0					33	10	5	0	0	0	0.63077	1	5917	5917		44.117	1.2525	1	4225300			19223	6589	12114	12169	19514	19514					0.0727629588294576
KAVLAATSKF	10	Unmodified	_KAVLAATSKF_					0	0	0		GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant;GZF1|p.P462Tfs*5|1|0.18|ENSG00000125812|chr20:23367016-23367017|-/A|frameshift_variant;ENSG00000125812|ENST00000338121|GZF1	GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant	GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.3137817382812	2	518.313492	1034.61243	0.46463	0.00024082	-0.12811	-6.6401E-05	0.33652	0.00017442	518.31351305411	21.912	0.086966	21.912	21.867	21.954	0					4	2	2	0	0	0	0.41335	1	6117	6117		54.776	8.8244	1	94679			19224	3437	12115	12170	19515	19515					0.09650906374031365
KAVLTPAVT	9	Unmodified	_KAVLTPAVT_					0	0	0		ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	ENSG00000188162|ENST00000399397|OTOG	ENSG00000188162|ENST00000399397|OTOG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.28143310546875	2	450.28166	898.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.898	1	36.898	36.398	37.398	0								0	0	0	0.1836	1	13952	13952		53.351	0	1				19225	7240	12116	12171	19516	19516					0.09543545936935516
KAVMRRWLPA	10	Unmodified	_KAVMRRWLPA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	614.362548828125	2	614.360785	1226.70702	0.55636	0.00034181	1.3235	0.00081308	1.8798	0.0011549	614.3615318857729	20.62	0.11674	20.62	20.543	20.659	0					5	3	2	0	0	0	0.68774	1	5781	5781		3.41	0	1	109540			19226	6014	12117	12172	19517	19517					0.10273141644393036
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2799072265625	2	471.279983	940.545414	-0.0098224	-4.6291E-06	-1.1149	-0.00052542	-1.1247	-0.00053004	471.2797092748923	18.822	0.295	18.822	18.654	18.949	0					19	8	3	0	0	0	0.087861	1	4730	4730		82.241	21.947	1	559080			19227	2239	12118	12173	19518	19518					0.0727629588294576
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.77862548828125	2	471.279983	940.545414	0.1778	8.3796E-05	-1.3962	-0.000658	-1.2184	-0.0005742	471.27967430197526	19.133	0.5954	19.133	18.896	19.492	0					35	14	4	0	0	0	0.087861	1	5690	5690		82.241	16.343	1	4514100			19228	2239	12118	12173	19519	19519					0.0727629588294576
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2795715332031	2	471.279983	940.545414	-0.12417	-5.8519E-05	-0.62762	-0.00029578	-0.75179	-0.0003543	471.27976329380004	19.042	0.51333	19.042	18.883	19.396	0					33	10	5	0	0	0	0.07136	1	5938	5938		87.696	34.345	1	4225300			19229	2239	12118	12173	19520	19520					0.0727629588294576
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.27960205078125	2	471.279983	940.545414	-0.82237	-0.00038756	0.56293	0.0002653	-0.25944	-0.00012227	471.28007755499505	19.058	0.16385	19.058	18.951	19.115	0					6	3	2	0	0	0	0.28897	1	5974	5974		51.193	14.034	1	186260			19230	2239	12118	12173	19521	19521					0.0727629588294576
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2803955078125	2	471.279983	940.545414	-0.1904	-8.9732E-05	-0.24904	-0.00011737	-0.43944	-0.0002071	471.27994246313915	18.907	0.27899	18.907	18.73	19.009	0					14	6	3	0	0	0	0.25716	1	5000	5000		54.776	7.119	1	464640			19231	2239	12118	12173	19522	19522					0.0727629588294576
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2798767089844	2	471.279983	940.545414	-0.55228	-0.00026028	0.021342	1.0058E-05	-0.53094	-0.00025022	471.2800893735974	19.055	0.66153	19.055	18.846	19.508	0					29	13	3	0	0	0	0.021961	1	5784	5784		118.74	39.292	1	5597500			19232	2239	12118	12173	19523	19523					0.0727629588294576
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2798156738281	2	471.279983	940.545414	0.57448	0.00027074	-2.6284	-0.0012387	-2.0539	-0.00096798	471.27948222342576	19.025	0.36599	19.025	18.83	19.196	0					23	7	5	0	0	0	0.07136	2	5803	5778;5803		87.696	30.975	1	2092500			19233	2239	12118	12173	19524;19525	19525					0.0727629588294576
KAVNTDYLKK	10	Unmodified	_KAVNTDYLKK_					0	0	0			REV__ENST00000416139.1_1_1:212482446-212482779:-|nuORF	REV__ENST00000416139.1_1_1:212482446-212482779:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.3405151367188	2	590.340238	1178.66592	0.12323	7.2747E-05	-0.38561	-0.00022764	-0.26238	-0.0001549	590.3399079979616	21.004	0.27301	21.004	20.825	21.098	0					15	8	2	0	0	0	0.70274	1	5715	5715		21.686	0.8486	1	107530	+		19234	19031	12119	12174	19526	19526					0.08373659085873442
KAVPRPLTA	9	Unmodified	_KAVPRPLTA_					0	0	0			REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF	REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.8001708984375	2	476.800552	951.58655	0.37452	0.00017857	-0.92784	-0.0004424	-0.55332	-0.00026382	476.79999447737595	16.325	0.18569	16.325	16.236	16.422	0					8	4	3	0	0	0	0.25109	1	4414	4414		55.504	18.345	1	386000	+		19235	12076	12120	12175	19527	19527					0.10882056922400807
KAVSKSSR	8	Unmodified	_KAVSKSSR_					0	0	0			REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7606506347656	2	431.758884	861.503215	2.5571	0.001104	1.9508	0.00084227	4.5079	0.0019463	431.75957591669595	37.225	0.21222	37.225	37.137	37.349	0					9	4	3	0	0	0	0.73426	1	14557	14557		29.15	0	1	254080	+		19236	15286	12121	12176	19528	19528					0.06692320474576263
KAVTQLVP	8	Unmodified	_KAVTQLVP_					0	0	0			REV__MYL6|p.M73V|1|0.08|ENSG00000092841|chr12:56160016-56160016|A/G|missense_variant	REV__MYL6|p.M73V|1|0.08|ENSG00000092841|chr12:56160016-56160016|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.268310546875	2	428.268553	854.522553	0.23206	9.9383E-05	-0.73511	-0.00031482	-0.50305	-0.00021544	428.2681509504281	24.407	0.52614	24.407	24.064	24.59	0					34	16	3	0	0	0	0.63077	1	7270	7270		44.117	0	1	186710	+		19237	20908	12122	12177	19529	19529					0.0894727676546836
KAVTYLRQK	9	Unmodified	_KAVTYLRQK_					0	0	0		ENST00000461115.5_1_13:21189938-21205265:+|nuORF;ENST00000482172.5_1_13:21189938-21228047:+|nuORF;IFT88|p.K453Rfs*5|3|0.37|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant;IFT88|p.M728*|1|0.4|ENSG00000032742|chr13:20663579-20663579|A/-|frameshift_variant;IFT88|p.S746Lfs*10|1|0.3|ENSG00000032742|chr13:20670999-20671000|-/G|frameshift_variant;nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.838134765625	2	553.837665	1105.66078	0.61229	0.00033911	0.53691	0.00029736	1.1492	0.00063647	553.83765107593	16.016	0.34949	16.016	15.926	16.275	0					15	8	4	0	0	0	0.19952	1	4267	4267		45.972	1.5951	1	496020			19238	1154	12123	12178	19530	19530					0.11217400013947554
KAVVCLAFN	9	Unmodified	_KAVVCLAFN_					0	0	0		ENST00000301724.14_1_16:2258611-2258875:+|nuORF;ENST00000563067.5_1_16:2258286-2258875:+|nuORF;nc|ENSG00000167965|Q9BVC4-3|MLST8;ENST00000568542.5_1_16:2256445-2258875:+|nuORF;nc|ENSG00000167965|Q9BVC4-5|MLST8;ENSG00000167965|ENST00000569417|MLST8	ENST00000301724.14_1_16:2258611-2258875:+|nuORF	ENST00000301724.14_1_16:2258611-2258875:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.768798828125	2	482.767863	963.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.694	1	19.694	19.194	20.194	0								0	0	0	0.35507	1	5398	5398		24.203	3.2558	1				19239	6040	12124	12179	19531	19531					0.03795319405060127
KAVVRGDFIS	10	Unmodified	_KAVVRGDFIS_					0	0	0			REV__ENSG00000143183|ENST00000367881|TMCO1	REV__ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3141479492188	2	546.314023	1090.61349	0.42786	0.00023375	-0.68921	-0.00037653	-0.26135	-0.00014278	546.3135707482389	31.041	2.2142	31.041	30.905	33.119	0					165	55	5	0	0	0	0.12896	1	11815	11815		90.37	15.327	1	92143000	+		19240	15172	12125	12180	19532	19532					0.07181120742961866
KAWLTHML	8	Oxidation (M)	_KAWLTHM(Oxidation (M))L_		KAWLTHM(1)L		KAWLTHM(58)L	0	0	1			REV__NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	REV__NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7773132324219	2	508.273312	1014.53207	-0.11063	-5.6229E-05	3.8772	0.0019707	3.7665	0.0019144	508.2753879896617	36.475	0.31815	36.475	36.329	36.647	0					10	5	2	0	0	0	0.52345	1	14224	14224		57.811	6.4758	1	160300	+		19241	17536	12126	12181	19533	19533		662			0.02538721779330899
KAYKTVIKK	9	Unmodified	_KAYKTVIKK_					0	0	0		ENST00000593455.5_1_19:40486165-40487209:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4	ENST00000593455.5_1_19:40486165-40487209:+|nuORF	ENST00000593455.5_1_19:40486165-40487209:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8529663085938	2	539.852784	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.972	1	14.972	14.472	15.472	0								0	0	0	0.18645	1	3767	3767		52.937	15.125	1				19242	1061	12127	12182	19534	19534					0.15527758679127146
KAYKTVIKK	9	Unmodified	_KAYKTVIKK_					0	0	0		ENST00000593455.5_1_19:40486165-40487209:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4	ENST00000593455.5_1_19:40486165-40487209:+|nuORF	ENST00000593455.5_1_19:40486165-40487209:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.2375793457031	3	360.237615	1077.69102	-0.066049	-2.3793E-05	-0.46675	-0.00016814	-0.5328	-0.00019194	360.2374692439442	14.868	0.11685	14.868	14.811	14.928	0					6	2	3	0	0	0	0.33044	1	3807	3807		63.534	23.476	1	119660			19243	1061	12127	12182	19535	19535					0.15527758679127146
KAYQLHSRPV	10	Unmodified	_KAYQLHSRPV_					0	0	0		KIF15|p.K1251Nfs*11|1|0.08|ENSG00000163808|chr3:44848041-44848042|-/TTTCAAATTC|frameshift_variant;ENST00000493134.1_1_3:44840780-44854740:+|nuORF;nc|ENSG00000163808|Q9NS87-4|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15	KIF15|p.K1251Nfs*11|1|0.08|ENSG00000163808|chr3:44848041-44848042|-/TTTCAAATTC|frameshift_variant	KIF15|p.K1251Nfs*11|1|0.08|ENSG00000163808|chr3:44848041-44848042|-/TTTCAAATTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.838134765625	2	599.838197	1197.66184	-0.12089	-7.2515E-05	-0.69208	-0.00041513	-0.81297	-0.00048765	599.8377171575497	35.881	0.64971	35.881	35.484	36.134	0					38	17	3	0	0	0	0.67098	1	13400	13400		25.574	13.938	1	390900			19244	11253	12128	12183	19536	19536					0.0709161438285264
KCCLISVCR	9	2 Carbamidomethyl (C)	_KC(Carbamidomethyl (C))C(Carbamidomethyl (C))LISVCR_	KC(1)C(0.999)LISVC(0.001)R		KC(41)C(32)LISVC(-32)R		0	2	0			REV__FAM72A|p.F20L|1|0.24|ENSG00000196550|chr1:206201966-206201966|G/T|missense_variant	REV__FAM72A|p.F20L|1|0.24|ENSG00000196550|chr1:206201966-206201966|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.7807006835938	2	569.780121	1137.54569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.611	1	36.611	36.111	37.111	0								0	0	0	0.2591	1	14270	14270		42.396	8.2236	3		+		19245	17177	12129	12184	19537	19537	611;612				-0.017581117753707076
KCEEWLAMM	9	Unmodified	_KCEEWLAMM_					0	0	0			REV__nc|ENSG00000120885|P10909-4|CLU	REV__nc|ENSG00000120885|P10909-4|CLU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.74951171875	2	570.747956	1139.48136	1.75	0.00099883	0.47776	0.00027268	2.2278	0.0012715	570.7485122081599	32.006	0.33497	32.006	31.899	32.234	0					23	8	4	0	0	0	0.54081	1	11692	11692		27.882	0	1	997520	+		19246	14300	12130	12185	19538	19538					-0.0828031165219727
KCEEWLAMM	9	Unmodified	_KCEEWLAMM_					0	0	0			REV__nc|ENSG00000120885|P10909-4|CLU	REV__nc|ENSG00000120885|P10909-4|CLU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.749267578125	2	570.747956	1139.48136	1.6265	0.0009283	0.63329	0.00036145	2.2598	0.0012898	570.7484915525039	31.961	0.31752	31.961	31.852	32.17	0					23	6	4	0	0	0	0.38666	1	11991	11991		27.882	0	1	1651000	+		19247	14300	12130	12185	19539	19539					-0.0828031165219727
KCETPNQDKK	10	Unmodified	_KCETPNQDKK_					0	0	0			REV__ENST00000554165.1_1_14:91850766-91884010:-|nuORF	REV__ENST00000554165.1_1_14:91850766-91884010:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.7977294921875	2	595.795337	1189.57612	3.1683	0.0018877	0.58697	0.00034972	3.7553	0.0022374	595.795787240498	21.363	0.31549	21.363	21.304	21.62	0					13	6	4	0	0	0	0.31613	1	6953	6953		65.465	3.358	1	1057100	+		19248	20229	12131	12186	19540	19540					-0.01108338585004276
KCFLEREASD	10	Unmodified	_KCFLEREASD_					0	0	0		RPS6KA6|p.S516L|1|0.11|ENSG00000072133|chrX:84104566-84104566|G/A|missense_variant	RPS6KA6|p.S516L|1|0.11|ENSG00000072133|chrX:84104566-84104566|G/A|missense_variant	RPS6KA6|p.S516L|1|0.11|ENSG00000072133|chrX:84104566-84104566|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.2821655273438	2	599.282063	1196.54957	-0.074288	-4.452E-05	0.777	0.00046564	0.70271	0.00042112	599.2824350932044	30.319	0.3717	30.319	30.115	30.487	0					16	9	2	0	0	0	0.20981	1	10876	10876		78.264	11.302	1	196140			19249	22358	12132	12187	19541	19541					-0.040840274763240814
KCFSTIIAL	9	Unmodified	_KCFSTIIAL_					0	0	0			REV__nc|ENSG00000141068|Q8IVT5-4|KSR1	REV__nc|ENSG00000141068|Q8IVT5-4|KSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2853088378906	2	498.283346	994.552139	3.3838	0.0016861	0.91711	0.00045698	4.3009	0.0021431	498.2837721370356	30.455	0.27775	30.455	30.357	30.635	0					22	9	3	0	0	0	0.4966	1	10001	10001		32.812	2.3088	1	454960	+		19250	15101	12133	12188	19542	19542					0.05464472719290825
KCGDDKKR	8	Unmodified	_KCGDDKKR_					0	0	0			REV__ZNF674|p.A505Pfs*32|1|0.2|ENSG00000251192|chrX:46500077-46500077|T/-|frameshift_variant	REV__ZNF674|p.A505Pfs*32|1|0.2|ENSG00000251192|chrX:46500077-46500077|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2472839355469	2	475.247826	948.481099	-0.4345	-0.0002065	0.10902	5.181E-05	-0.32549	-0.00015469	475.24788396572285	12.657	0.12352	12.657	12.563	12.686	0					9	4	3	0	0	0	0.37144	1	2703	2703		74.255	0	1	715880	+		19251	17732	12134	12189	19543	19543					0.004797727344907798
KCGFFTHVY	9	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))GFFTHVY_	KC(1)GFFTHVY		KC(69)GFFTHVY		0	1	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.77490234375	2	579.773677	1157.5328	1.7413	0.0010095	0.72234	0.00041879	2.4636	0.0014283	579.7741027978877	26.428	0.81904	26.428	26.234	27.053	0					52	16	4	0	0	0	0.14603	1	9305	9305		68.787	68.787	1	2497200	+		19252	16058	12135	12190	19544	19544	576				-0.039664835716166635
KCGKLKAI	8	Unmodified	_KCGKLKAI_					0	0	0			REV__nc|ENSG00000106853|Q14914-2|PTGR1	REV__nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.77276611328125	2	430.772948	859.531344	-0.84947	-0.00036593	0.41396	0.00017832	-0.43551	-0.00018761	430.77311103152294	31.912	0.28009	31.912	31.818	32.098	0					23	11	3	0	0	0	0.79882	1	10593	10593		19.36	0	1	374890	+		19253	13839	12136	12191	19545	19545					0.09595927130294513
KCGLICYWSVK	11	Unmodified	_KCGLICYWSVK_					0	0	0			REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	650.332763671875	2	650.333044	1298.65154	1.2137	0.00078934	-3.2821	-0.0021344	-2.0683	-0.0013451	650.3307466598941	26.384	0.071726	26.384	26.337	26.409	0					4	2	2	0	0	0	0.70609	1	8292	8292		27.047	1.4733	1	32632	+		19254	12442	12137	12192	19546	19546					0.014155473417076792
KCGPPWLR	8	Unmodified	_KCGPPWLR_					0	0	0		ENST00000403796.6_1_11:124932967-124946675:+|nuORF	ENST00000403796.6_1_11:124932967-124946675:+|nuORF	ENST00000403796.6_1_11:124932967-124946675:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.76141357421875	2	478.760372	955.506192	2.2662	0.001085	-0.031883	-1.5264E-05	2.2343	0.0010697	478.7603308974313	29.034	0.66589	29.034	28.675	29.341	0					30	13	3	0	0	0	0.61938	1	10551	10551		45.952	45.952	1	2842200			19255	9266	12138	12193	19547	19547					0.02665872327725083
KCHRRWLP	8	Unmodified	_KCHRRWLP_					0	0	0			REV__ENST00000526952.1_2_11:33789164-33793404:-|nuORF	REV__ENST00000526952.1_2_11:33789164-33793404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.3045043945312	2	548.30327	1094.59199	1.7824	0.00097732	-0.39071	-0.00021423	1.3917	0.00076309	548.3036150062863	16.81	0.15026	16.81	16.712	16.863	0					10	3	4	0	0	0	0.61938	1	4894	4894		35.201	0	1	764550	+		19256	13935	12139	12194	19548	19548					0.04847457233222485
KCIECKFCTSH	11	2 Carbamidomethyl (C)	_KCIEC(Carbamidomethyl (C))KFC(Carbamidomethyl (C))TSH_	KC(0.409)IEC(0.591)KFC(1)TSH		KC(-1.6)IEC(1.6)KFC(33)TSH		0	2	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	706.81103515625	2	706.809607	1411.60466	2.2645	0.0016006	-0.13764	-9.7284E-05	2.1269	0.0015033	706.8096154612987	18.198	0.67345	18.198	17.887	18.561	0					36	13	4	0	0	0	0.47622	1	5457	5457		45.972	8.1607	3	7724700	+		19257	14853	12140	12195	19549	19549	548;549;550				-0.08467680271701283
KCIECKFCTSH	11	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))IECKFCTSH_	KC(0.5)IEC(0.5)KFCTSH		KC(0)IEC(0)KFC(-30)TSH		0	1	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	678.3003540039062	2	678.298875	1354.5832	2.2644	0.0015359	-0.073222	-4.9667E-05	2.1911	0.0014863	678.2987820210922	18.047	0.31952	18.047	17.836	18.156	0					16	6	3	0	0	0	0.42746	1	5482	5482		49.536	10.782	3	1582500	+		19258	14853	12140	12196	19550	19550	548;549;550				-0.07991065300439004
KCIGEFYSFV	10	Unmodified	_KCIGEFYSFV_					0	0	0			REV__ENST00000477248.1_1_1:33284219-33284375:+|nuORF	REV__ENST00000477248.1_1_1:33284219-33284375:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.7899169921875	2	596.788992	1191.56343	1.2843	0.00076646	-0.60561	-0.00036142	0.67869	0.00040504	596.7887437491769	38.719	0.51622	38.719	38.596	39.113	0					31	18	2	0	0	0	0.56931	1	15281	15281		37.812	7.4938	1	95421	+		19259	19549	12141	12197	19551	19551					-0.024687499772426236
KCKQCGKTI	9	Unmodified	_KCKQCGKTI_					0	0	0		ENST00000601957.5_1_19:35433558-35435739:+|nuORF;ZNF30|p.K600Nfs*16|4|0.2|ENSG00000168661|chr19:34944761-34944761|A/-|frameshift_variant;ENSG00000168661|ENST00000601142|ZNF30;nc|ENSG00000168661|P17039-2|ZNF30	ENST00000601957.5_1_19:35433558-35435739:+|nuORF	ENST00000601957.5_1_19:35433558-35435739:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7714538574219	2	504.77008	1007.52561	2.9329	0.0014804	0.35694	0.00018017	3.2898	0.0016606	504.77013618774714	46.263	0.32385	46.263	46.149	46.473	0					38	14	4	0	0	0	0.087861	1	18499	18499		82.241	5.4664	1	798540			19260	6107	12142	12198	19552	19552					0.022144605563312325
KCKRYLQE	8	Unmodified	_KCKRYLQE_					0	0	0			REV__ENST00000565298.5_1_16:1574507-1576156:-|nuORF	REV__ENST00000565298.5_1_16:1574507-1576156:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2871704101562	2	534.286951	1066.55935	0.71096	0.00037986	-0.38265	-0.00020444	0.32831	0.00017541	534.2867877094615	29.166	0.36479	29.166	29.059	29.424	0					15	7	3	0	0	0	0.5676	1	10644	10644		53.351	9.2347	1	606780	+		19261	17123	12143	12199	19553	19553					0.028732053197245477
KCKYSKER	8	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))KYSKER_	KC(1)KYSKER		KC(46)KYSKER		0	1	0			REV__nc|ENSG00000213096|O75437-2|ZNF254	REV__nc|ENSG00000213096|O75437-2|ZNF254	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7906494140625	2	549.789858	1097.56516	0.224	0.00012315	0.62272	0.00034236	0.84672	0.00046552	549.7902607211445	11.645	0.12471	11.645	11.568	11.693	0					5	3	2	0	0	0	0.61938	1	2426	2426		45.952	6.6991	1	447910	+		19262	17556	12144	12200	19554	19554	620				0.020283038313891666
KCLAAHYQKR	10	Unmodified	_KCLAAHYQKR_					0	0	0		ZNF462|p.G1711C|1|0.35|ENSG00000148143|chr9:106929043-106929043|G/T|missense_variant	ZNF462|p.G1711C|1|0.35|ENSG00000148143|chr9:106929043-106929043|G/T|missense_variant	ZNF462|p.G1711C|1|0.35|ENSG00000148143|chr9:106929043-106929043|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.3338012695312	2	609.332224	1216.6499	0.46417	0.00028283	1.134	0.00069099	1.5982	0.00097382	609.3324378765923	23.32	0.10514	23.32	23.263	23.368	0					5	3	2	0	0	0	0.41335	1	6986	6986		54.776	0	1	70499			19263	23155	12145	12201	19555	19555					0.050236743679761275
KCLEKINEIE	10	Unmodified	_KCLEKINEIE_					0	0	0			REV__nc|ENSG00000166352|Q86VG3-2|IFTAP	REV__nc|ENSG00000166352|Q86VG3-2|IFTAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.8197631835938	2	609.823563	1217.63257	0.49684	0.00030298	-4.1956	-0.0025586	-3.6988	-0.0022556	609.8214838431145	27.642	0.40865	27.642	27.338	27.747	0					18	8	3	0	0	0	0.5276	1	9960	9960		37.812	8.6415	1	238810	+		19264	16113	12146	12202	19556	19556					0.03246289251683265
KCLGLDITK	9	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))LGLDITK_	KC(1)LGLDITK		KC(62)LGLDITK		0	1	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF;LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant;LY75|p.K1412Rfs*2|4|0.39|ENSG00000054219|chr2:159816951-159816951|T/-|frameshift_variant;LY75|p.Q1410Tfs*6|1|0.07|ENSG00000054219|chr2:159816959-159816960|-/GGGTT|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2968139648438	2	524.296985	1046.57942	1.0144	0.00053187	-0.49691	-0.00026053	0.51753	0.00027134	524.2967656239629	25.511	0.51554	25.511	25.205	25.721	0					13	10	2	0	0	0	0.19605	1	9077	9077		62.107	9.1707	1	126320			19265	1267	12147	12203	19557	19557	47				0.05798956259673105
KCLINVSF	8	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))LINVSF_	KC(1)LINVSF		KC(61)LINVSF		0	1	0		nc|ENSG00000280055|Q8N9X5|LINC02912	nc|ENSG00000280055|Q8N9X5|LINC02912	nc|ENSG00000280055|Q8N9X5|LINC02912	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7672424316406	2	490.76532	979.516088	0.81727	0.00040109	2.4053	0.0011804	3.2225	0.0015815	490.7662840839686	23.653	0.24165	23.653	23.604	23.846	0					11	5	3	0	0	0	0.49216	1	7876	7876		60.972	8.0352	1	591810			19266	11810	12148	12204	19558	19558	473				0.02551015542451296
KCLNSTQR	8	Unmodified	_KCLNSTQR_					0	0	0		ENST00000594286.5_1_19:53619136-53625671:-|nuORF;ZNF415|p.I93Yfs*18|1|0.18|ENSG00000170954|chr19:53109768-53109768|T/-|frameshift_variant;nc|ENSG00000170954|Q09FC8-6|ZNF415;ENSG00000170954|ENST00000243643|ZNF415	ENST00000594286.5_1_19:53619136-53625671:-|nuORF	ENST00000594286.5_1_19:53619136-53625671:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2478332519531	2	475.247826	948.481099	-1.5666	-0.00074452	2.4551	0.0011668	0.88846	0.00042224	475.248788968613	12.411	0.070018	12.411	12.361	12.431	0					7	4	2	0	0	0	0.37378	1	2454	2454		73.975	2.0973	1	64538			19267	6269	12149	12205	19559	19559					0.004797727344907798
KCNACRKLF	9	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))NACRKLF_	KC(0.992)NAC(0.008)RKLF		KC(21)NAC(-21)RKLF		0	1	0		ENSG00000141946|ENST00000269834|ZIM3	ENSG00000141946|ENST00000269834|ZIM3	ENSG00000141946|ENST00000269834|ZIM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.295654296875	2	570.294253	1138.57395	1.9883	0.0011339	2.6277	0.0014985	4.6159	0.0026324	570.2957377621536	45.469	0.19757	45.469	45.401	45.599	0					14	10	2	0	0	0	0.2873	1	17581	17581		51.335	12.083	2	108080			19268	4475	12150	12206	19560	19560	188				0.010209541962012736
KCNNKRRR	8	Unmodified	_KCNNKRRR_					0	0	0			REV__ENST00000245441.9_2_14:51226857-51226965:-|nuORF	REV__ENST00000245441.9_2_14:51226857-51226965:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.8053588867188	2	537.806708	1073.59886	2.2299	0.0011993	-3.8739	-0.0020834	-1.644	-0.00088413	537.8044307348289	18.95	0.11024	18.95	18.899	19.009	0					4	2	2	0	0	0	0.58597	1	5064	5064		40.573	6.4001	1	37097	+		19269	17940	12151	12207	19561	19561					0.065007701138029
KCPLPGTAKE	10	Unmodified	_KCPLPGTAKE_					0	0	0		nc|ENSG00000049323|Q14766-3|LTBP1	nc|ENSG00000049323|Q14766-3|LTBP1	nc|ENSG00000049323|Q14766-3|LTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7825927734375	2	522.281334	1042.54812	0.084775	4.4276E-05	1.239	0.00064708	1.3237	0.00069136	522.7829011527493	32.227	0.89934	32.227	31.849	32.748	0					31	22	2	0	0	0	0.5155	1	11775	11775		43.651	4.398	1	569490			19270	11423	12152	12208	19562	19562					0.02854383225599122
KCQHQESLG	9	Unmodified	_KCQHQESLG_					0	0	0		nc|ENSG00000116691|Q5JXC2-2|MIIP;ENST00000466860.5_1_1:12082310-12089454:+|nuORF;ENSG00000116691|ENST00000235332|MIIP	nc|ENSG00000116691|Q5JXC2-2|MIIP	nc|ENSG00000116691|Q5JXC2-2|MIIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2444458007812	2	515.242741	1028.47093	1.3996	0.00072114	2.7528	0.0014184	4.1524	0.0021395	515.2441939710011	16.708	0.24999	16.708	16.613	16.863	0					9	5	2	0	0	0	0.26904	1	4850	4850		53.351	5.6941	1	675740			19271	11492	12153	12209	19563	19563					-0.04216834990734242
KCQKSGHQAK	10	Unmodified	_KCQKSGHQAK_					0	0	0		HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|40|2|sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|40|2|sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|40|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7927856445312	2	557.792932	1113.57131	0.11936	6.6576E-05	-0.14224	-7.9339E-05	-0.022881	-1.2763E-05	557.7928702075523	27.906	0.81915	27.906	27.762	28.581	0					76	29	5	0	0	0	0.536	1	9091	9091		41.427	2.673	1	4233700			19272	11201	12154	12210	19564	19564					0.019068220629151256
KCRIPLKM	8	Oxidation (M)	_KCRIPLKM(Oxidation (M))_		KCRIPLKM(1)		KCRIPLKM(52)	0	0	1			REV__tr|U7T2J6|U7T2J6_FUSNULargeribosomalsubunitproteinuL16OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplPPE=3SV=1	REV__tr|U7T2J6|U7T2J6_FUSNULargeribosomalsubunitproteinuL16OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplPPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7924499511719	2	502.790815	1003.56708	2.9273	0.0014718	0.12685	6.3779E-05	3.0541	0.0015356	502.7908304296634	46.7	0.18512	46.7	46.606	46.791	0					19	8	3	0	0	0	0.57802	1	18665	18665		52.299	52.299	1	300320	+		19273	22104	12155	12211	19565	19565		800			0.06543641315670357
KCSEPQSSK	9	Unmodified	_KCSEPQSSK_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2369384765625	2	497.237124	992.459695	0.77614	0.00038593	-1.5389	-0.00076521	-0.76279	-0.00037929	497.23653516542504	11.094	0.16545	11.094	11.039	11.204	0					9	5	2	0	0	0	0.21419	1	2188	2188		59.931	17.535	1	61280			19274	1019;11415	12156	12212	19566	19566					-0.03683657084877723
KCSKPNVQK	9	Unmodified	_KCSKPNVQK_					0	0	0		nc|ENSG00000113328|P51959-2|CCNG1;ENSG00000113328|ENST00000340828|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2870483398438	2	516.286951	1030.55935	1.2422	0.00064134	-1.5015	-0.0007752	-0.25926	-0.00013385	516.2863176570299	13.196	0.27272	13.196	13.078	13.351	0					13	7	3	0	0	0	0.04067	1	2945	2945		98.582	24.327	1	226030			19275	2795	12157	12213	19567	19567					0.04529205319727225
KCSKPNVQK	9	Unmodified	_KCSKPNVQK_					0	0	0		nc|ENSG00000113328|P51959-2|CCNG1;ENSG00000113328|ENST00000340828|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.287841796875	2	516.286951	1030.55935	0.86661	0.00044742	-0.86716	-0.0004477	-0.00054358	-2.8064E-07	516.2866025836261	13.211	0.15522	13.211	13.112	13.267	0					6	3	2	0	0	0	0.037924	1	3151	3151		101.25	29.957	1	137360			19276	2795	12157	12213	19568	19568					0.04529205319727225
KCSLKKELY	9	Unmodified	_KCSLKKELY_					0	0	0			REV__nc|ENSG00000162711|Q96P20-2|NLRP3	REV__nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.31689453125	2	556.312635	1110.61072	1.1447	0.00063681	-0.94025	-0.00052308	0.20445	0.00011374	556.3122407678852	32.278	0.31934	32.278	32.068	32.387	0					16	6	3	0	0	0	0.18416	1	12120	12120		66.429	25.857	1	894740	+		19277	15833	12158	12214	19569	19569					0.05983529293780521
KCSPGIHKKR	10	Unmodified	_KCSPGIHKKR_					0	0	0			REV__ETNPPL|p.E163Rfs*17|1|0.3|ENSG00000164089|chr4:108754634-108754635|-/T|frameshift_variant	REV__ETNPPL|p.E163Rfs*17|1|0.3|ENSG00000164089|chr4:108754634-108754635|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.3330688476562	2	577.334767	1152.65498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.882	1	19.882	19.382	20.382	0								0	0	0	0.40315	1	5462	5462		31.53	9.5699	1		+		19278	15962	12159	12215	19570	19570					0.08475978230626424
KCSRAEAEAWY	11	Unmodified	_KCSRAEAEAWY_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF	ENSG00000135480|ENST00000331817|KRT7;ENST00000551130.1_1_12:52635330-52637101:+|nuORF	ENST00000551130.1_1_12:52635330-52637101:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	657.3010864257812	2	657.300787	1312.58702	0.24187	0.00015898	-0.6023	-0.00039589	-0.36043	-0.00023691	657.3004973907669	25.744	0.36959	25.744	25.578	25.948	0					14	8	2	0	0	0	0.67178	1	7745	7745		30.318	0.76697	1	120560		+	19279	636;10622	12160	12216	19571	19571					-0.056769362107161214
KCTSNPAEI	9	Unmodified	_KCTSNPAEI_					0	0	0		SENP8|p.L88*|2|0.37|ENSG00000166192|chr15:72139882-72139882|T/-|frameshift_variant;SENP8|p.H117Ifs*16|1|0.21|ENSG00000166192|chr15:72139966-72139966|T/-|frameshift_variant;ENSG00000166192|ENST00000340912|SENP8	SENP8|p.L88*|2|0.37|ENSG00000166192|chr15:72139882-72139882|T/-|frameshift_variant	SENP8|p.L88*|2|0.37|ENSG00000166192|chr15:72139882-72139882|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.73394775390625	2	481.734217	961.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.956	1	38.956	38.456	39.456	0								0	0	0	0.18645	1	14815	14815		52.937	4.9772	1				19280	5870	12161	12217	19572	19572					-0.028387555965537103
KCVCLHFGLG	10	Unmodified	_KCVCLHFGLG_					0	0	0			REV__ENST00000544665.7_1_16:31343047-31343377:+|nuORF	REV__ENST00000544665.7_1_16:31343047-31343377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7726440429688	2	538.772622	1075.53069	2.04	0.0010991	1.4701	0.00079206	3.5101	0.0018911	538.7732146797275	43.628	0.18972	43.628	43.521	43.71	0					10	5	2	0	0	0	0.4943	1	17443	17443		45.952	8.1404	1	97071	+		19281	20157	12162	12218	19573	19573					-0.004052355810699737
KCVSDPQK	8	Unmodified	_KCVSDPQK_					0	0	0			REV__ATAD2B|p.K307Rfs*57|3|0.21|ENSG00000119778|chr2:23875886-23875886|T/-|frameshift_variant	REV__ATAD2B|p.K307Rfs*57|3|0.21|ENSG00000119778|chr2:23875886-23875886|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7311706542969	2	452.731477	903.448402	-0.3345	-0.00015144	-0.47683	-0.00021588	-0.81134	-0.00036732	452.73136300282783	19.461	0.39126	19.461	19.214	19.605	0					18	11	2	0	0	0	0.46013	1	5028	5028		64.207	0	1	567390	+		19282	12240	12163	12219	19574	19574					-0.007184343883636757
KCWGGGLS	8	Unmodified	_KCWGGGLS_					0	0	0			REV__ENST00000565396.5_1_16:2052877-2053195:-|nuORF	REV__ENST00000565396.5_1_16:2052877-2053195:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.19427490234375	2	404.194531	806.374509	-1.3616	-0.00055037	0.80548	0.00032557	-0.55616	-0.0002248	404.1948962527426	23.068	0.099928	23.068	22.998	23.098	0					5	3	2	0	0	0	0.8006	1	6886	6886		20.482	1.1219	1	115840	+		19283	20333	12164	12220	19575	19575					-0.036423577600317
KCYDCGKSFR	10	2 Carbamidomethyl (C)	_KC(Carbamidomethyl (C))YDC(Carbamidomethyl (C))GKSFR_	KC(1)YDC(1)GKSFR		KC(75)YDC(75)GKSFR		0	2	0		ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624;nc|ENSG00000197566|Q9P2J8-2|ZNF624;ENST00000579528.1_1_17:16525604-16527848:-|nuORF	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	660.794677734375	2	660.794814	1319.57508	-1.0505	-0.0006942	0.60046	0.00039678	-0.45009	-0.00029741	660.795216663127	27.547	0.69486	27.547	27.389	28.084	0					46	14	5	0	0	0	0.23612	1	9978	9978		75.043	9.5779	1	9079600			19284	7474	12165	12221	19576	19576	317;318				-0.07192876225531109
KCYEMTDLTNN	11	Unmodified	_KCYEMTDLTNN_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;PLK2|p.E130*|1|0.03|ENSG00000145632|chr5:58458832-58458833|-/A|frameshift_variant;PLK2|p.E130Vfs*4|1|0.05|ENSG00000145632|chr5:58458831-58458832|-/GAGAA|frameshift_variant;ENST00000514306.1_1_5:57754443-57755636:-|nuORF;ENST00000504196.1_1_5:57754793-57755897:-|nuORF;ENST00000515415.5_1_5:57754112-57754961:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	666.2843627929688	2	666.283945	1330.55334	-1.1992	-0.000799	0.97063	0.00064671	-0.22855	-0.00015228	666.2848866902445	26.35	0.26066	26.35	26.249	26.509	0					15	5	4	0	0	0	0.41029	1	9412	9412		33.922	13.925	1	777120			19285	4680	12166	12222	19577	19577					-0.0987172576476496
KCYEMTDLTNN	11	Unmodified	_KCYEMTDLTNN_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;PLK2|p.E130*|1|0.03|ENSG00000145632|chr5:58458832-58458833|-/A|frameshift_variant;PLK2|p.E130Vfs*4|1|0.05|ENSG00000145632|chr5:58458831-58458832|-/GAGAA|frameshift_variant;ENST00000514306.1_1_5:57754443-57755636:-|nuORF;ENST00000504196.1_1_5:57754793-57755897:-|nuORF;ENST00000515415.5_1_5:57754112-57754961:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	666.2843017578125	2	666.283945	1330.55334	2.5905	0.001726	-2.9438	-0.0019614	-0.35329	-0.00023539	666.2825091326396	26.32	0.31809	26.32	26.168	26.486	0					20	6	5	0	0	0	0.33569	1	9277	9277		41.427	7.2541	1	1490400			19286	4680	12166	12222	19578	19578					-0.0987172576476496
KCYHLVLK	8	Unmodified	_KCYHLVLK_					0	0	0			REV__ENSG00000145782|ENST00000509910|ATG12	REV__ENSG00000145782|ENST00000509910|ATG12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.29296875	2	502.291505	1002.56846	2.9261	0.0014697	-0.39797	-0.0001999	2.5281	0.0012698	502.2912367057884	17.507	0.45804	17.507	17.259	17.717	0					15	9	3	0	0	0	0.63077	1	5004	5004		44.117	44.117	1	8736900	+		19287	15287	12167	12223	19579	19579					0.06727598676047819
KDAAAAAALGP	11	Unmodified	_KDAAAAAALGP_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2652893066406	2	478.263999	954.513445	-0.28186	-0.0001348	-0.32803	-0.00015689	-0.60989	-0.00029169	478.2640398757218	12.4	0.4649	12.4	12.293	12.758	0					44	15	5	0	0	0	0.1937	1	2739	2739		75.043	17.232	1	3780200	+		19288	14921	12168	12224	19580	19580					0.03436883409119673
KDARKAIKE	9	Unmodified	_KDARKAIKE_					0	0	0		tr|U7T267|U7T267_FUSNUQueuinetRNA-ribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tgtPE=3SV=1	tr|U7T267|U7T267_FUSNUQueuinetRNA-ribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tgtPE=3SV=1	tr|U7T267|U7T267_FUSNUQueuinetRNA-ribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tgtPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.814453125	2	529.819473	1057.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.478	1	23.478	22.978	23.978	0								0	0	0	0.11736	1	7780	7780		67.494	3.2864	1				19289	22933	12169	12225	19581	19581					0.09788523117231307
KDASELKAE	9	Unmodified	_KDASELKAE_					0	0	0			REV__ENSG00000066654|ENST00000396083|THUMPD1	REV__ENSG00000066654|ENST00000396083|THUMPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7587585449219	2	495.758746	989.50294	-0.38105	-0.00018891	0.42996	0.00021315	0.048911	2.4248E-05	495.75906780883	23.912	0.18782	23.912	23.819	24.006	0					9	4	3	0	0	0	0.33548	1	7995	7995		47.228	2.2055	1	392080	+		19290	13127	12170	12226	19582	19582					0.007768559640453532
KDCLLTSVS	9	Unmodified	_KDCLLTSVS_					0	0	0		ENST00000528808.1_1_11:60150614-60157189:+|nuORF;nc|ENSG00000166927|Q9GZW8-2|MS4A7;ENSG00000166927|ENST00000300184|MS4A7	ENST00000528808.1_1_11:60150614-60157189:+|nuORF	ENST00000528808.1_1_11:60150614-60157189:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.25323486328125	2	483.252243	964.489932	-0.14624	-7.0673E-05	2.1403	0.0010343	1.9941	0.00096363	483.2532980159308	15.721	0.21239	15.721	15.601	15.813	0					7	5	2	0	0	0	0.2873	1	4114	4114		51.335	1.8939	1	684800			19291	5950	12171	12227	19583	19583					0.006267015803018694
KDCLLTSVS	9	Unmodified	_KDCLLTSVS_					0	0	0		ENST00000528808.1_1_11:60150614-60157189:+|nuORF;nc|ENSG00000166927|Q9GZW8-2|MS4A7;ENSG00000166927|ENST00000300184|MS4A7	ENST00000528808.1_1_11:60150614-60157189:+|nuORF	ENST00000528808.1_1_11:60150614-60157189:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2532653808594	2	483.252243	964.489932	2.4178	0.0011684	-0.39351	-0.00019016	2.0243	0.00097825	483.25205844663026	15.673	0.21831	15.673	15.513	15.731	0					9	4	3	0	0	0	0.4966	1	4199	4199		32.812	3.6424	1	910480			19292	5950	12171	12227	19584	19584					0.006267015803018694
KDDAKEVVA	9	Unmodified	_KDDAKEVVA_					0	0	0		tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7610168457031	2	487.761289	973.508025	0.80295	0.00039165	-1.3727	-0.00066956	-0.56977	-0.00027791	487.76055943281443	25.941	0.55153	25.941	25.599	26.151	0					18	9	3	0	0	0	0.30841	1	9136	9136		49.536	0	1	1999000			19293	22909	12172	12228	19585	19585					0.02021159826665553
KDDLHFQDV	9	Unmodified	_KDDLHFQDV_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.771484375	2	558.769645	1115.52474	3.4696	0.0019387	-0.11671	-6.5213E-05	3.3529	0.0018735	558.7697361368915	23.709	0.36232	23.709	23.552	23.914	0					18	7	4	0	0	0	0.07136	1	8087	8087		87.696	18.069	1	3214700	+		19294	17242	12173	12229	19586	19586					-0.028403392873769917
KDDRLDRK	8	Unmodified	_KDDRLDRK_					0	0	0			REV__ENST00000578535.1_1_18:22265891-22265996:-|nuORF	REV__ENST00000578535.1_1_18:22265891-22265996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.29248046875	2	523.291079	1044.56761	1.5359	0.0008037	0.42235	0.00022101	1.9582	0.0010247	523.2909286328531	13.448	0.061	13.448	13.407	13.468	0					6	3	2	0	0	0	0.48092	1	2700	2700		62.107	9.1707	1	77654	+		19295	20435	12174	12230	19587	19587					0.04710475560705163
KDEENGNRGD	10	Unmodified	_KDEENGNRGD_					0	0	0		ENST00000401578.2_1_6:80779646-80779811:-|nuORF	ENST00000401578.2_1_6:80779646-80779811:-|nuORF	ENST00000401578.2_1_6:80779646-80779811:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.2449340820312	2	567.244523	1132.47449	0.12372	7.0181E-05	-0.26955	-0.0001529	-0.14583	-8.2721E-05	567.2445388317499	19.914	0.20251	19.914	19.808	20.011	0					13	6	3	0	0	0	0.50881	1	5469	5469		44.377	1.981	1	218150			19296	9253	12175	12231	19588	19588					-0.08644493683164
KDEFAQIK	8	Unmodified	_KDEFAQIK_					0	0	0			REV__VEPH1|p.N441Tfs*42|1|0.28|ENSG00000197415|chr3:157364318-157364318|T/-|frameshift_variant	REV__VEPH1|p.N441Tfs*42|1|0.28|ENSG00000197415|chr3:157364318-157364318|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7659912109375	2	489.766374	977.518196	-0.071417	-3.4978E-05	-1.1166	-0.00054688	-1.188	-0.00058185	489.7670055763543	26.094	0.40802	26.094	25.885	26.293	0					20	8	4	0	0	0	0.52345	1	9262	9262		57.811	1.0902	1	471270	+		19297	17333	12176	12232	19589	19589					0.02853767551891906
KDEFESVS	8	Unmodified	_KDEFESVS_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7185363769531	2	470.716547	939.418542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.962	1	13.962	13.462	14.462	0								0	0	0	1.7419	1	3519	3519		29.15	4.9468	1		+		19298	14609	12177	12233	19590	19590					-0.053590948527016735
KDEIRHSR	8	Unmodified	_KDEIRHSR_					0	0	0		ADAMTS20|p.R246I|1|0.24|ENSG00000173157|chr12:43502282-43502282|C/A|missense_variant	ADAMTS20|p.R246I|1|0.24|ENSG00000173157|chr12:43502282-43502282|C/A|missense_variant	ADAMTS20|p.R246I|1|0.24|ENSG00000173157|chr12:43502282-43502282|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7858276367188	2	520.783422	1039.55229	3.3787	0.0017596	0.17278	8.9979E-05	3.5515	0.0018496	520.7827928188151	24.654	0.40878	24.654	24.347	24.756	0					14	8	3	0	0	0	0.37144	1	8543	8543		74.255	7.8258	1	638600			19299	59	12178	12234	19591	19591					0.03409608763513461
KDEKKGNKV	9	Unmodified	_KDEKKGNKV_					0	0	0			REV__tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1	REV__tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.30419921875	2	523.303655	1044.59276	1.6252	0.00085049	0.0013829	7.2367E-07	1.6266	0.00085121	523.3035187925872	49.141	0.64974	49.141	48.867	49.517	0					59	35	2	0	0	0	0.48389	1	19481	19481		34.173	5.023	1	98157	+		19300	21813	12179	12235	19592	19592					0.07224530363282611
KDEKNKTKK	9	Unmodified	_KDEKNKTKK_					0	0	0		MYOF|p.K33N|1|0.26|ENSG00000138119|chr10:93456927-93456927|C/A|missense_variant	MYOF|p.K33N|1|0.26|ENSG00000138119|chr10:93456927-93456927|C/A|missense_variant	MYOF|p.K33N|1|0.26|ENSG00000138119|chr10:93456927-93456927|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8326416015625	2	559.830037	1117.64552	3.4692	0.0019422	0.91426	0.00051183	4.3835	0.002454	559.8305474328369	36.803	0.31031	36.803	36.698	37.008	0					13	6	3	0	0	0	0.28504	1	14374	14374		51.528	0.1923	1	544080			19301	11398	12180	12236	19593	19593					0.09140488426078264
KDEKSLKR	8	Unmodified	_KDEKSLKR_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant;ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant;ANKRD11|p.D1104Mfs*214|1|0.28|ENSG00000167522|chr16:89283233-89283233|T/-|frameshift_variant	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2974548339844	2	502.298373	1002.58219	-0.072754	-3.6544E-05	-0.16958	-8.5181E-05	-0.24234	-0.00012173	502.29782700211155	12.601	0.10205	12.601	12.528	12.63	0					5	3	2	0	0	0	0.54629	1	2692	2692		55.504	0.72789	1	165520			19302	5996	12181	12237	19594	19594					0.08100547708852446
KDELELFV	8	Unmodified	_KDELELFV_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;CELSR1|p.T1849Rfs*8|2|0.25|ENSG00000075275|chr22:46397831-46397831|C/-|frameshift_variant;CELSR1|p.R2275Qfs*18|1|0.18|ENSG00000075275|chr22:46384603-46384604|-/G|frameshift_variant;CELSR1|p.I2650Sfs*5|1|0.42|ENSG00000075275|chr22:46369187-46369187|T/-|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000497509.1_1_22:46926386-46930076:-|nuORF	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7663269042969	2	496.768583	991.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.013	1	12.013	11.513	12.513	0								0	0	0	1.7419	1	2356	2356		30.504	2.2494	1				19303	467	12182	12238	19595	19595					0.026512319748235313
KDELKKKK	8	Unmodified	_KDELKKKK_					0	0	0		nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.82672119140625	2	508.826766	1015.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.534	1	15.534	15.034	16.034	0								0	0	0	1.7419	1	3396	3396		25.574	2.0514	1				19304	6869	12183	12239	19596	19596					0.1317859526536722
KDERKKVV	8	Unmodified	_KDERKKVV_					0	0	0			REV__tr|U7T2M7|U7T2M7_FUSNUGalactokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galKPE=3SV=1	REV__tr|U7T2M7|U7T2M7_FUSNUGalactokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galKPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.30841064453125	2	501.308741	1000.60293	-0.58976	-0.00029565	0.4144	0.00020774	-0.17536	-8.7912E-05	501.3091235659288	14.517	0.27029	14.517	14.407	14.677	0					11	5	3	0	0	0	0.2451	1	3615	3615		99.375	14.459	1	441470	+		19305	22111	12184	12240	19597	19597					0.10265138088516323
KDERKKVV	8	Unmodified	_KDERKKVV_					0	0	0			REV__tr|U7T2M7|U7T2M7_FUSNUGalactokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galKPE=3SV=1	REV__tr|U7T2M7|U7T2M7_FUSNUGalactokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galKPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3082275390625	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.53	1	14.53	14.03	15.03	0								0	0	0	1.7419	1	3636	3636		79.451	13.022	1		+		19306	22111	12184	12240	19598	19598					0.10265138088516323
KDESMRFLVA	10	Unmodified	_KDESMRFLVA_					0	0	0			REV__ENST00000465552.1_1_3:41277978-41278230:+|nuORF	REV__ENST00000465552.1_1_3:41277978-41278230:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	598.311767578125	2	598.310623	1194.60669	3.1605	0.001891	-1.4326	-0.00085716	1.7279	0.0010338	598.3100089217621	21.862	0.21514	21.862	21.755	21.97	0					12	4	4	0	0	0	0.23612	1	7195	7195		75.043	0.78827	1	1805400	+		19307	16234	12185	12241	19599	19599					0.017174398000634028
KDFEKTPNST	10	Unmodified	_KDFEKTPNST_					0	0	0		ENSG00000076641|ENST00000220597|PAG1	ENSG00000076641|ENST00000220597|PAG1	ENSG00000076641|ENST00000220597|PAG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	389.52764892578125	3	389.527782	1165.56152	-1.2148	-0.0004732	2.0329	0.00079186	0.81807	0.00031866	389.5284356824858	32.163	0.14519	32.163	32.091	32.236	0					10	6	2	0	0	0	0.63851	1	10706	10706		29.551	2.5034	1	78703			19308	1565	12186	12242	19600	19600					-0.014640874614769928
KDFETWLDNIS	11	Unmodified	_KDFETWLDNIS_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	684.3282470703125	2	684.327524	1366.6405	-0.85679	-0.00058633	0.5501	0.00037645	-0.30669	-0.00020988	684.3282558802943	32.318	0.34705	32.318	32.231	32.578	0					20	14	2	0	0	0	0.575	1	10841	10841		38.754	0	1	73744			19309	3111	12187	12243	19601	19601					-0.02815860227178746
KDFETWLDNIS	11	Unmodified	_KDFETWLDNIS_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	684.327880859375	2	684.327524	1366.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.835	1	33.835	33.335	34.335	0								0	0	0	0.37939	1	11917	11917		41.08	3.5719	1				19310	3111	12187	12243	19602	19602					-0.02815860227178746
KDFIRPKL	8	Unmodified	_KDFIRPKL_					0	0	0		nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.816162109375	2	508.816202	1015.61785	-0.10318	-5.25E-05	0.3059	0.00015565	0.20272	0.00010315	508.8162504405303	30.907	0.48559	30.907	30.719	31.204	0					43	19	3	0	0	0	0.63077	1	9902	9902		44.117	1.7207	1	187620			19311	3835	12188	12244	19603	19603					0.11066629956508223
KDFIRPKL	8	Unmodified	_KDFIRPKL_					0	0	0		nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8157958984375	2	508.816202	1015.61785	-0.5388	-0.00027415	0.55313	0.00028144	0.014331	7.292E-06	508.8164272895572	30.936	0.92066	30.936	30.742	31.663	0					87	34	4	0	0	0	0.49216	1	10161	10161		60.972	4.2509	1	1599100			19312	3835	12188	12244	19604	19604					0.11066629956508223
KDFIRPKL	8	Unmodified	_KDFIRPKL_					0	0	0		nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.8160400390625	2	508.816202	1015.61785	0.15744	8.0106E-05	-0.16469	-8.3796E-05	-0.0072513	-3.6896E-06	508.81607564479634	30.907	0.84114	30.907	30.724	31.566	0					51	22	3	0	0	0	0.63077	1	10538	10538		44.117	1.6423	1	2142600			19313	3835	12188	12244	19605	19605					0.11066629956508223
KDFMTYLSA	9	Unmodified	_KDFMTYLSA_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2608642578125	2	538.260068	1074.50558	0.22899	0.00012326	1.3216	0.00071136	1.5506	0.00083461	538.2608184544865	11.054	0.040776	11.054	11.034	11.075	0					4	2	2	0	0	0	0.35021	1	2104	2104		23.042	0	1	59716			19314	5037	12189	12245	19606	19606					-0.02869011902657803
KDFSEKHSTL	10	Unmodified	_KDFSEKHSTL_					0	0	0		ENST00000485599.5_1_22:29138272-29141477:+|nuORF;ENSG00000100209|ENST00000216027|HSCB	ENST00000485599.5_1_22:29138272-29141477:+|nuORF	ENST00000485599.5_1_22:29138272-29141477:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.3037109375	2	596.303852	1190.59315	0.1337	7.9726E-05	0.65705	0.0003918	0.79075	0.00047153	596.3041505815866	21.349	0.22106	21.349	21.263	21.484	0					10	7	2	0	0	0	0.52275	1	5860	5860		42.864	4.1107	1	111970			19315	1984	12190	12246	19607	19607					0.005479052925011274
KDFSSEVLE	9	Unmodified	_KDFSSEVLE_					0	0	0		DIS3L2|p.S345_D346insKSK|1|0.06|ENSG00000144535|chr2:232163543-232163544|-/AAAAGTAAA|inframe_insertion	DIS3L2|p.S345_D346insKSK|1|0.06|ENSG00000144535|chr2:232163543-232163544|-/AAAAGTAAA|inframe_insertion	DIS3L2|p.S345_D346insKSK|1|0.06|ENSG00000144535|chr2:232163543-232163544|-/AAAAGTAAA|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2615356445312	2	527.258579	1052.50261	1.7565	0.00092613	3.8685	0.0020397	5.625	0.0029658	527.2604293361726	17.693	0.31931	17.693	17.483	17.802	0					18	6	5	0	0	0	0.12239	1	5290	5290		74.255	3.8565	1	1936400			19316	794	12191	12247	19608	19608					-0.021545637557892405
KDFVVQSY	8	Unmodified	_KDFVVQSY_					0	0	0			REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|10|2|sense	REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|10|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.25396728515625	2	493.2531	984.491647	-1.2678	-0.00062536	2.6135	0.0012891	1.3457	0.00066375	493.2547368013952	11.674	0.12496	11.674	11.618	11.743	0					8	4	3	0	0	0	0.64096	1	2255	2255		42.474	1.9018	1	866820	+		19317	20810	12192	12248	19609	19609					-0.0012192133942789951
KDGAKMVAAV	10	Unmodified	_KDGAKMVAAV_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.776611328125	2	495.276052	988.537551	0.70455	0.00034894	-1.1863	-0.00058756	-0.48179	-0.00023862	495.2755384100641	30.392	0.28454	30.392	30.179	30.464	0					19	6	4	0	0	0	0.49411	1	11308	11308		45.972	0.020292	1	3452900			19318	3744	12193	12249	19610	19610					0.042824005711622704
KDGKEIVAK	9	Unmodified	_KDGKEIVAK_					0	0	0		tr|U7T3E6|U7T3E6_FUSNUATPaseBadF/BadG/BcrA/BcrDtypedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00402PE=4SV=1	tr|U7T3E6|U7T3E6_FUSNUATPaseBadF/BadG/BcrA/BcrDtypedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00402PE=4SV=1	tr|U7T3E6|U7T3E6_FUSNUATPaseBadF/BadG/BcrA/BcrDtypedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00402PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2950439453125	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.769	1	15.769	15.269	16.269	0								0	0	0	0.3063	1	4378	4378		33.922	1.1092	1				19319	22965	12194	12250	19611	19611					0.08222029477326487
KDGKRITFI	9	Unmodified	_KDGKRITFI_					0	0	0		tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3245239257812	2	539.324391	1076.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.703	1	10.703	10.203	11.203	0								0	0	0	0.31222	1	2084	2084		25.574	0	1				19320	22909	12195	12251	19612	19612					0.09897711122584951
KDGPAPSGLL	10	Unmodified	_KDGPAPSGLL_					0	0	0			REV__MNX1|p.P336S|1|0.24|ENSG00000130675|chr7:157005720-157005720|G/A|missense_variant	REV__MNX1|p.P336S|1|0.24|ENSG00000130675|chr7:157005720-157005720|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.76593017578125	2	477.766374	953.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.543	1	25.543	25.043	26.043	0								0	0	0	0.3805	1	8741	8741		36.447	4.9169	1		+		19321	20888	12196	12252	19613	19613					0.0395776755190127
KDGRGGLELP	10	Unmodified	_KDGRGGLELP_					0	0	0			REV__ENST00000372264.3_1_9:134165160-134165370:+|nuORF	REV__ENST00000372264.3_1_9:134165160-134165370:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.751953125	2	521.288005	1040.56146	1.0826	0.00056433	-0.52125	-0.00027172	0.56133	0.00029261	521.2876423426754	16.038	0.16718	16.038	15.93	16.097	0					7	3	3	0	0	0	0.71938	1	4470	4470		19.104	1.7386	1	370680	+		19322	18667	12197	12253	19614	19614					0.04279957329163153
KDGRQLLSI	9	Unmodified	_KDGRQLLSI_					0	0	0		SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG	SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant	SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.87445068359375	3	343.873224	1028.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.427	1	29.427	28.927	29.927	0								0	0	0	0.2591	1	10778	10778		49.536	0	1				19323	1485	12198	12254	19615	19615					0.08468834225891442
KDGSFITLR	9	Unmodified	_KDGSFITLR_					0	0	0		nc|ENSG00000133794|O00327-4|BMAL1;nc|ENSG00000133794|O00327-6|BMAL1;nc|ENSG00000133794|O00327-9|BMAL1;nc|ENSG00000133794|O00327-1|BMAL1;nc|ENSG00000133794|O00327-7|BMAL1;nc|ENSG00000133794|O00327-8|BMAL1;ENSG00000133794|ENST00000403290|BMAL1	nc|ENSG00000133794|O00327-4|BMAL1	nc|ENSG00000133794|O00327-4|BMAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7930908203125	2	518.792924	1035.57129	1.6089	0.00083469	0.25614	0.00013288	1.865	0.00096757	518.79212723722	15.389	0.30443	15.389	15.18	15.484	0					10	6	3	0	0	0	0.19952	1	4204	4204		61.691	6.915	1	532320			19324	3870	12199	12255	19616	19616					0.05493145334548899
KDHKEKSEF	9	Unmodified	_KDHKEKSEF_					0	0	0		PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.V1883Ffs*29|1|0.09|ENSG00000186472|chr7:82955307-82955307|T/-|frameshift_variant;PCLO|p.S1913Vfs*9|1|0.32|ENSG00000186472|chr7:82955216-82955216|T/-|frameshift_variant	PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant	PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.2905883789062	2	574.290745	1146.56694	1.0465	0.000601	-1.1224	-0.00064456	-0.075848	-4.3559E-05	574.290104786674	12.482	0.13088	12.482	12.419	12.55	0					14	7	3	0	0	0	0.27249	1	2369	2369		52.937	3.4007	1	156070			19325	7141	12200	12256	19617	19617					-0.00048363879000135057
KDHNRGRR	8	Unmodified	_KDHNRGRR_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.78857421875	2	519.78683	1037.55911	1.4431	0.0007501	1.8515	0.00096241	3.2946	0.0017125	519.787773821444	12.863	0.075632	12.863	12.796	12.872	0					6	4	2	0	0	0	0.59773	1	2470	2470		49.442	7.0454	1	49239			19326	2435	12201	12257	19618	19618					0.04182966434746049
KDHSSGNPGQQ	11	Unmodified	_KDHSSGNPGQQ_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.7620849609375	2	577.762883	1153.51121	0.84064	0.00048569	-1.5181	-0.00087713	-0.6775	-0.00039144	577.7620579550875	26.112	0.51953	26.112	25.699	26.219	0					27	14	3	0	0	0	0.78029	1	7857	7857		19.263	2.7895	1	86716			19327	11604	12202	12258	19619	19619					-0.05940197066615838
KDIDIHEV	8	Unmodified	_KDIDIHEV_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7558288574219	2	484.756007	967.497461	0.64135	0.0003109	-0.70767	-0.00034305	-0.066322	-3.215E-05	484.755574552347	26.767	0.10404	26.767	26.671	26.775	0					6	2	3	0	0	0	0.62915	1	9267	9267		44.377	7.2181	1	432480			19328	5043	12203	12259	19620	19620					0.01241177172244079
KDIDIHEV	8	Unmodified	_KDIDIHEV_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7555236816406	2	484.756007	967.497461	-0.092791	-4.4981E-05	-0.65023	-0.0003152	-0.74302	-0.00036019	484.7556325357098	26.767	0.11742	26.767	26.677	26.795	0					6	2	3	0	0	0	0.39125	1	9617	9617		71.877	24.22	1	198130			19329	5043	12203	12259	19621	19621					0.01241177172244079
KDIHNLEF	8	Unmodified	_KDIHNLEF_					0	0	0		ZNF813|p.C260Vfs*4|1|0.03|ENSG00000198346|chr19:53491008-53491009|-/G|frameshift_variant;ENSG00000198346|ENST00000396403|ZNF813	ZNF813|p.C260Vfs*4|1|0.03|ENSG00000198346|chr19:53491008-53491009|-/G|frameshift_variant	ZNF813|p.C260Vfs*4|1|0.03|ENSG00000198346|chr19:53491008-53491009|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2635803222656	2	508.263999	1014.51345	0.90044	0.00045766	-1.0979	-0.000558	-0.19742	-0.00010034	508.2635185566939	34.298	0.32154	34.298	34.143	34.465	0					15	8	3	0	0	0	0.53424	1	12761	12761		55.504	0	1	326020			19330	7550	12204	12260	19622	19622					0.006768834091303688
KDIIEPLTI	9	Unmodified	_KDIIEPLTI_					0	0	0		tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.8770446777344	3	347.877864	1040.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.178	1	12.178	11.678	12.678	0								0	0	0	0.35737	1	2509	2509		23.523	0.94304	1				19331	22709	12205	12261	19623	19623					0.09308066934318049
KDIILWTF	8	Unmodified	_KDIILWTF_					0	0	0			REV__ENST00000502980.1_1_3:98239917-98241743:-|nuORF	REV__ENST00000502980.1_1_3:98239917-98241743:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.295166015625	2	518.29731	1034.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.163	1	28.163	27.663	28.663	0								0	0	0	1.7419	1	9051	9051		40.573	0	1		+		19332	19814	12206	12262	19624	19624					0.06416118971014839
KDIKGISGTSL	11	Unmodified	_KDIKGISGTSL_					0	0	0		tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8256225585938	2	559.824421	1117.63429	3.4693	0.0019422	-1.5934	-0.00089202	1.8759	0.0010502	559.8235925742944	15.087	0.1684	15.087	14.978	15.146	0					7	3	3	0	0	0	0.63225	1	3916	3916		12.812	0	1	457050			19333	22618	12207	12263	19625	19625					0.08017666331966211
KDILLQQQQQL	11	Unmodified	_KDILLQQQQQL_					0	0	0		nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	677.88720703125	2	677.888084	1353.76161	-1.5904	-0.0010781	2.7859	0.0018885	1.1954	0.00081038	677.8892899865672	36.528	0.12504	36.528	36.439	36.564	0					5	3	2	0	0	0	0.51003	1	14237	14237		41.08	9.4458	1	66935			19334	6075	12208	12264	19626	19626					0.0988838720613785
KDIMDLKQ	8	Unmodified	_KDIMDLKQ_					0	0	0		ENST00000567550.1_1_16:15528510-15675189:+|nuORF;nc|ENSG00000166780|Q96MC5-2|BMERB1;ENSG00000166780|ENST00000300006|BMERB1	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7698669433594	2	495.76806	989.521567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.644	1	12.644	12.144	13.144	0								0	0	0	1.7419	1	2465	2465		62.107	4.2961	1				19335	5925	12209	12265	19627	19627					0.026386943342572522
KDIRKLLQ	8	Unmodified	_KDIRKLLQ_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.32708740234375	2	507.326934	1012.63931	0.16108	8.1719E-05	-0.43348	-0.00021992	-0.2724	-0.0001382	507.32690909456977	28.589	0.21319	28.589	28.482	28.695	0					6	4	2	0	0	0	0.49216	1	10503	10503		60.972	0.67798	1	75958			19336	10569	12210	12266	19628	19628					0.1335001498522388
KDIVKLID	8	Unmodified	_KDIVKLID_					0	0	0		tr|U7SLT6|U7SLT6_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01887PE=3SV=1	tr|U7SLT6|U7SLT6_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01887PE=3SV=1	tr|U7SLT6|U7SLT6_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01887PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2945251464844	2	472.294768	942.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.299	1	41.299	40.799	41.799	0								0	0	0	1.7419	1	14574	14574		49.442	1.482	1				19337	22649	12211	12267	19629	19629					0.10139815108414041
KDIVLNKEQ	9	Unmodified	_KDIVLNKEQ_					0	0	0		tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8115844726562	2	543.811313	1085.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.392	1	41.392	40.892	41.892	0								0	0	0	0.28191	1	16462	16462		38.754	1.2454	1				19338	22745	12212	12268	19630	19630					0.06869397160448898
KDKAELISGP	10	Unmodified	_KDKAELISGP_					0	0	0		ENST00000496962.1_1_2:85786016-85788551:-|nuORF;GGCX|p.P636Qfs*11|1|0.07|ENSG00000115486|chr2:85550732-85550732|G/-|frameshift_variant;ENSG00000115486|ENST00000233838|GGCX	ENST00000496962.1_1_2:85786016-85788551:-|nuORF	ENST00000496962.1_1_2:85786016-85788551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.298095703125	2	529.298039	1056.58152	0.73354	0.00038826	0.25747	0.00013628	0.99101	0.00052454	529.2979393268283	38.01	0.15517	38.01	37.944	38.099	0					5	3	2	0	0	0	0.24256	1	14914	14914		74.255	10.048	1	70947			19339	2914	12213	12269	19631	19631					0.0554970826913177
KDKDGQLVR	9	Unmodified	_KDKDGQLVR_					0	0	0		TRIM3|p.R353Q|1|0.32|ENSG00000110171|chr11:6456668-6456668|C/T|missense_variant	TRIM3|p.R353Q|1|0.32|ENSG00000110171|chr11:6456668-6456668|C/T|missense_variant	TRIM3|p.R353Q|1|0.32|ENSG00000110171|chr11:6456668-6456668|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8014526367188	2	529.80128	1057.58801	1.735	0.00091919	-0.45917	-0.00024327	1.2758	0.00067592	529.8011905423643	12.89	0.18326	12.89	12.801	12.984	0					6	4	2	0	0	0	0.12239	1	3025	3025		74.255	2.3776	1	119610			19340	23061	12214	12270	19632	19632					0.06151646220519069
KDKDMVVSA	9	Unmodified	_KDKDMVVSA_					0	0	0			REV__TUT1|p.A338Qfs*59|1|0.33|ENSG00000149016|chr11:62578709-62578709|C/-|frameshift_variant	REV__TUT1|p.A338Qfs*59|1|0.33|ENSG00000149016|chr11:62578709-62578709|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.75946044921875	2	496.757692	991.500831	-0.3305	-0.00016418	3.4739	0.0017257	3.1434	0.0015615	496.7593475760242	13.931	0.12816	13.931	13.848	13.976	0					7	3	3	0	0	0	0.36892	1	3293	3293		44.377	0.26039	1	110780	+		19341	15400	12215	12271	19633	19633					0.004741039545933745
KDKEACVHK	9	Unmodified	_KDKEACVHK_					0	0	0		nc|ENSG00000091513|P02787|TF;ENSG00000091513|ENST00000402696|TF;ENST00000467842.1_1_3:133494266-133496087:+|nuORF;ENST00000461695.1_1_3:133489395-133497461:+|nuORF	nc|ENSG00000091513|P02787|TF	nc|ENSG00000091513|P02787|TF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.276123046875	2	529.276583	1056.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.544	1	13.544	13.044	14.044	0								0	0	0	0.080575	1	2804	2804		77.318	5.4401	1				19342	1859	12216	12272	19634	19634					0.012606149400653521
KDKEGTPPL	9	Unmodified	_KDKEGTPPL_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant;KMT2A|p.Q384Ffs*6|1|0.04|ENSG00000118058|chr11:118472308-118472309|-/TTTC|frameshift_variant;KMT2A|p.Q554Sfs*13|1|0.43|ENSG00000118058|chr11:118472814-118472814|C/-|frameshift_variant;KMT2A|p.E1318Kfs*38|1|0.28|ENSG00000118058|chr11:118482028-118482028|A/-|frameshift_variant;KMT2A|p.P1289Ffs*68|1|0.17|ENSG00000118058|chr11:118481943-118481944|-/GT|frameshift_variant;KMT2A|p.K1773Sfs*47|1|0.26|ENSG00000118058|chr11:118494727-118494727|A/-|frameshift_variant;KMT2A|p.K1938Sfs*43|1|0.42|ENSG00000118058|chr11:118498386-118498386|A/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.77166748046875	2	492.771657	983.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.769	1	17.769	17.269	18.269	0								0	0	0	0.3693	1	4500	4500		19.997	0.6368	1				19343	3061	12217	12273	19635	19635					0.03633750206347486
KDKETIAKL	9	Unmodified	_KDKETIAKL_					0	0	0			REV__SCG3|p.E85D|1|0.19|ENSG00000104112|chr15:51683292-51683292|A/C|missense_variant	REV__SCG3|p.E85D|1|0.19|ENSG00000104112|chr15:51683292-51683292|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.31640625	2	523.316232	1044.61791	-0.005102	-2.67E-06	-0.1128	-5.9032E-05	-0.11791	-6.1702E-05	523.3159778179174	29.548	0.1533	29.548	29.446	29.599	0					5	3	2	0	0	0	0.19605	1	10964	10964		62.107	7.3311	1	88874	+		19344	21491	12218	12274	19636	19636					0.09738585165860059
KDKEYEEIL	9	Unmodified	_KDKEYEEIL_					0	0	0		tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.53607177734375	3	389.536166	1165.58667	0.24878	9.6909E-05	-0.27487	-0.00010707	-0.026089	-1.0163E-05	389.5360386740027	24.849	0.45928	24.849	24.746	25.205	0					16	9	2	0	0	0	0.032383	1	8755	8755		106.68	20.821	1	8188400			19345	22912	12219	12275	19637	19637					0.010499673411004551
KDKGSKRRPAP	11	Unmodified	_KDKGSKRRPAP_					0	0	0			REV__ENST00000513778.1_1_4:6695618-6698766:+|nuORF	REV__ENST00000513778.1_1_4:6695618-6698766:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.9147644042969	3	413.914194	1238.72075	1.0299	0.00042629	1.2851	0.0005319	2.315	0.0009582	413.91458329023317	29.079	1.8665	29.079	28.888	30.754	0					64	46	2	0	0	0	0.74458	1	10328	10328		23.378	3.3474	1	144230	+		19346	19895	12220	12276	19638	19638					0.11094090677170243
KDKIRVPE	8	Unmodified	_KDKIRVPE_					0	0	0		tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7952880859375	2	492.795466	983.57638	-0.054126	-2.6673E-05	-1.284	-0.00063274	-1.3381	-0.00065941	492.79531337143976	19.839	0.21853	19.839	19.726	19.944	0					11	4	4	0	0	0	0.49216	1	6348	6348		60.972	0.67798	1	329060			19347	22831	12221	12277	19639	19639					0.08393449197171776
KDKKGKNPT	9	Unmodified	_KDKKGKNPT_					0	0	0			REV__ENST00000428142.1_1_17:16880427-16880571:-|nuORF	REV__ENST00000428142.1_1_17:16880427-16880571:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2980041503906	2	508.298373	1014.58219	0.10781	5.4799E-05	-0.22302	-0.00011336	-0.11521	-5.8561E-05	508.2981116246313	19.497	0.09861	19.497	19.45	19.548	0					4	2	2	0	0	0	0.41113	1	5315	5315		40.778	2.9666	1	216380	+		19348	19129	12222	12278	19640	19640					0.07548547708859132
KDKLDQVII	9	Unmodified	_KDKLDQVII_					0	0	0		nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL;nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-3|NPL	nc|ENSG00000135838|Q9BXD5-3|NPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7619018554688	2	536.324057	1070.63356	1.8418	0.00098782	-0.77193	-0.00041401	1.0699	0.00057382	536.3234834941265	40.742	0.16406	40.742	40.645	40.809	0					18	7	3	0	0	0	0.41958	1	16035	16035		40.058	5.8856	1	218510			19349	4027	12223	12279	19641	19641					0.10106871682910423
KDKLWVTV	8	Unmodified	_KDKLWVTV_					0	0	0		tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7926940917969	2	494.794935	987.575317	-0.06566	-3.2488E-05	-4.2915	-0.0021234	-4.3571	-0.0021559	494.7929412860678	15.952	0.091522	15.952	15.912	16.003	0					7	4	2	0	0	0	0.67836	1	3555	3555		34.173	0	1	53664			19350	22804	12224	12280	19642	19642					0.08103234828274708
KDKMIMQR	8	Unmodified	_KDKMIMQR_					0	0	0			REV__nc|ENSG00000100342|O14791-3|APOL1	REV__nc|ENSG00000100342|O14791-3|APOL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2852783203125	2	525.283354	1048.55216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.178	1	32.178	31.678	32.678	0								0	0	0	1.7419	1	10723	10723		23.042	4.7804	1		+		19351	13542	12225	12281	19643	19643					0.029821494476664157
KDKPESKK	8	Unmodified	_KDKPESKK_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.27935791015625	2	480.279649	958.544745	0.054384	2.612E-05	-0.83418	-0.00040064	-0.7798	-0.00037452	480.27921290773685	14.568	0.20761	14.568	14.477	14.685	0					17	8	3	0	0	0	0.66989	1	3009	3009		37.812	2.6595	1	84900			19352	7088	12226	12282	19644	19644					0.06381456443239131
KDKSAMIN	8	Unmodified	_KDKSAMIN_					0	0	0		ENST00000442280.1_1_1:197108106-197108244:-|nuORF	ENST00000442280.1_1_1:197108106-197108244:-|nuORF	ENST00000442280.1_1_1:197108106-197108244:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.7390441894531	2	453.739302	905.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.368	1	25.368	24.868	25.868	0								0	0	0	1.7419	1	7884	7884		44.117	1.6423	1				19353	9588	12227	12283	19645	19645					0.0075385212867331575
KDKVGHKLI	9	Unmodified	_KDKVGHKLI_					0	0	0			REV__ENST00000569826.2_1_15:42864283-42864628:+|nuORF	REV__ENST00000569826.2_1_15:42864283-42864628:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.55401611328125	3	346.553715	1036.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.677	1	10.677	10.177	11.177	0								0	0	0	0.36609	1	2043	2043		20.947	0	1		+		19354	20371	12228	12284	19646	19646					0.12246014985248621
KDKVMCIE	8	Unmodified	_KDKVMCIE_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.24383544921875	2	483.243363	964.472174	-0.27197	-0.00013143	0.36444	0.00017611	0.092471	4.4686E-05	483.243737053082	15.624	0.10862	15.624	15.57	15.678	0					10	4	3	0	0	0	0.5676	1	3538	3538		53.351	5.6941	1	105620			19355	2905	12229	12285	19647	19647					-0.011483369461871007
KDLAGPSLVLV	11	Unmodified	_KDLAGPSLVLV_					0	0	0			REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3389282226562	2	556.339707	1110.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.919	1	13.919	13.419	14.419	0								0	0	0	0.45674	1	3347	3347		2.5243	0	1		+		19356	18751	12230	12286	19648	19648					0.11395444716981729
KDLDVALPI	9	Unmodified	_KDLDVALPI_					0	0	0		TATDN3|p.E96D|1|0.05|ENSG00000203705|chr1:212802730-212802730|G/T|missense_variant;nc|ENSG00000203705|Q17R31-5|TATDN3;nc|ENSG00000203705|Q17R31-2|TATDN3;ENSG00000203705|ENST00000366974|TATDN3;nc|ENSG00000203705|Q17R31-3|TATDN3	TATDN3|p.E96D|1|0.05|ENSG00000203705|chr1:212802730-212802730|G/T|missense_variant	TATDN3|p.E96D|1|0.05|ENSG00000203705|chr1:212802730-212802730|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2928161621094	2	492.292225	982.569897	-0.036202	-1.7822E-05	0.60595	0.0002983	0.56975	0.00028048	492.2925392589609	35.067	0.2493	35.067	34.952	35.201	0					13	7	2	0	0	0	0.4966	1	12441	12441		32.812	1.2826	1	133870			19357	7655	12231	12287	19649	19649					0.07791511245807214
KDLKKLEEI	9	Unmodified	_KDLKKLEEI_					0	0	0			REV__tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1	REV__tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.333984375	2	558.337164	1114.65977	1.4271	0.0007968	-0.62064	-0.00034653	0.80646	0.00045028	558.336450227627	18.131	0.22108	18.131	17.999	18.22	0					13	7	3	0	0	0	0.38666	1	4452	4452		35.618	0	1	116090	+		19358	21875	12232	12288	19650	19650					0.10703140854366211
KDLKSYFS	8	Unmodified	_KDLKSYFS_					0	0	0		tr|U7SIQ9|U7SIQ9_FUSNUYARHGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02142PE=4SV=1	tr|U7SIQ9|U7SIQ9_FUSNUYARHGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02142PE=4SV=1	tr|U7SIQ9|U7SIQ9_FUSNUYARHGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02142PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.259765625	2	494.260925	986.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.854	1	47.854	47.354	48.354	0								0	0	0	1.7419	1	18210	18210		25.45	0	1				19359	22602	12233	12289	19651	19651					0.01350365177609092
KDLLELEKK	9	Unmodified	_KDLLELEKK_					0	0	0			REV__tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	REV__tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.3380737304688	2	558.337164	1114.65977	1.7472	0.00097552	0.0064973	3.6277E-06	1.7537	0.00097915	558.3372107574831	18.403	0.46972	18.403	18.241	18.711	0					21	9	4	0	0	0	0.27123	1	5679	5679		37.812	11.119	1	1521700	+		19360	21667	12234	12290	19652	19652					0.10703140854366211
KDLLEVSK	8	Unmodified	_KDLLEVSK_					0	0	0		LMOD1|p.P499S|1|0.27|ENSG00000163431|chr1:201899518-201899518|G/A|missense_variant	LMOD1|p.P499S|1|0.27|ENSG00000163431|chr1:201899518-201899518|G/A|missense_variant	LMOD1|p.P499S|1|0.27|ENSG00000163431|chr1:201899518-201899518|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2760925292969	2	466.276575	930.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.433	1	31.433	30.933	31.933	0								0	0	0	1.7419	1	10822	10822		44.117	1.7207	1				19361	11317	12235	12291	19653	19653					0.07054938211717854
KDLLVKAVK	9	Unmodified	_KDLLVKAVK_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.3395080566406	2	507.33951	1012.66447	-0.033078	-1.6782E-05	0.24493	0.00012426	0.21185	0.00010748	507.3396505027355	22.543	0.18272	22.543	22.463	22.645	0					9	4	3	0	0	0	0.50858	1	7356	7356		31.53	4.8369	1	239710	+		19362	12155	12236	12292	19654	19654					0.15864069787801327
KDLMWHKP	8	Unmodified	_KDLMWHKP_					0	0	0			REV__ENST00000446897.1_1_10:32392029-32392209:-|nuORF	REV__ENST00000446897.1_1_10:32392029-32392209:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7804565429688	2	527.778762	1053.54297	1.2494	0.00065942	1.3456	0.0007102	2.5951	0.0013696	527.7797889857197	17.131	0.068106	17.131	17.071	17.139	0					4	2	2	0	0	0	0.73426	1	4204	4204		29.15	2.4566	1	64338	+		19363	14559	12237	12293	19655	19655					0.018341241536063535
KDLNETKI	8	Unmodified	_KDLNETKI_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7713928222656	2	480.771657	959.528761	0.67938	0.00032663	-1.277	-0.00061394	-0.59761	-0.00028732	480.7713458505961	19.074	0.21298	19.074	18.967	19.18	0					11	4	3	0	0	0	0.5535	1	5981	5981		54.776	1.6874	1	799910	+		19364	17242	12238	12294	19656	19656					0.04737750206322744
KDLNKAAIQ	9	Unmodified	_KDLNKAAIQ_					0	0	0			REV__ENST00000568368.1_1_16:58756047-58768190:-|nuORF	REV__ENST00000568368.1_1_16:58756047-58768190:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.792236328125	2	500.792924	999.571294	0.66131	0.00033118	-3.4357	-0.0017206	-2.7744	-0.0013894	500.79122696400634	27.135	1.1043	27.135	26.368	27.472	0					54	26	3	0	0	0	0.1424	1	9436	9436		69.628	12.907	1	396520	+		19365	14423	12239	12295	19657	19657					0.07149145334540208
KDLNKVIGE	9	Unmodified	_KDLNKVIGE_					0	0	0		tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2928466796875	2	508.292756	1014.57096	-0.098227	-4.9928E-05	-0.024298	-1.2351E-05	-0.12253	-6.2279E-05	508.2927171061441	19.336	0.18817	19.336	19.214	19.402	0					13	5	3	0	0	0	0.19605	1	4955	4955		62.107	1.1355	1	354380			19366	22841	12240	12296	19658	19658					0.06425725614712974
KDLPQSSLL	9	Unmodified	_KDLPQSSLL_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7868347167969	2	500.787307	999.560061	0.66044	0.00033074	-1.473	-0.00073768	-0.81259	-0.00040694	500.78685607183996	33.829	0.39247	33.829	33.538	33.931	0					19	10	2	0	0	0	0.22837	1	12552	12552		58.23	0	1	128550			19367	3545	12241	12297	19659	19659					0.060263232404167866
KDLPSLSPY	9	Unmodified	_KDLPSLSPY_					0	0	0		OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant;OAS2|p.D514Gfs*41|1|0.05|ENSG00000111335|chr12:113006482-113006483|-/G|frameshift_variant;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.272705078125	2	510.274032	1018.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.417	1	39.417	38.917	39.917	0								0	0	0	0.3119	1	15009	15009		32.812	3.6629	1				19368	2662	12242	12298	19660	19660					0.024986343490809304
KDLRTIVQI	9	Unmodified	_KDLRTIVQI_					0	0	0			REV__ENST00000557739.1_1_14:35227840-35228035:-|nuORF	REV__ENST00000557739.1_1_14:35227840-35228035:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.337646484375	2	543.337498	1084.66044	0.32025	0.000174	1.1626	0.0006317	1.4829	0.0008057	543.3381397770752	28.165	0.24575	28.165	28.029	28.275	0					8	5	2	0	0	0	0.46194	1	10277	10277		36.447	0	1	114700	+		19369	20261	12243	12299	19661	19661					0.12149980294066154
KDLRVKNQY	9	Unmodified	_KDLRVKNQY_					0	0	0		EIF5B|p.E912D|1|0.23|ENSG00000158417|chr2:99390693-99390693|A/C|missense_variant	EIF5B|p.E912D|1|0.23|ENSG00000158417|chr2:99390693-99390693|A/C|missense_variant	EIF5B|p.E912D|1|0.23|ENSG00000158417|chr2:99390693-99390693|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.3330078125	2	582.330205	1162.64586	3.2326	0.0018824	0.51442	0.00029956	3.747	0.002182	582.3306426554077	49.959	0.15592	49.959	49.913	50.069	0					12	7	2	0	0	0	0.54267	1	19738	19738		27.882	2.3082	1	131170			19370	902	12244	12300	19662	19662					0.07103908145927562
KDLRYLLA	8	Unmodified	_KDLRYLLA_					0	0	0			REV__nc|ENSG00000283378|Q9BZ76-2|CNTNAP3	REV__nc|ENSG00000283378|Q9BZ76-2|CNTNAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2989501953125	2	496.300384	990.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.192	1	13.192	12.692	13.692	0								0	0	0	1.7419	1	3001	3001		18.324	0	1		+		19371	13836	12245	12301	19663	19663					0.09054637202541471
KDLSAELH	8	Unmodified	_KDLSAELH_					0	0	0			REV__ENST00000573886.5_1_17:4620541-4621453:+|nuORF	REV__ENST00000573886.5_1_17:4620541-4621453:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.74285888671875	2	456.742899	911.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.434	1	18.434	17.934	18.934	0								0	0	0	1.7419	1	5392	5392		40.573	1.7665	1		+		19372	14922	12246	12302	19664	19664					0.011969080007474986
KDLSNFSGAI	10	Unmodified	_KDLSNFSGAI_					0	0	0		ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C;MGAT4C|p.G113Efs*20|1|0.2|ENSG00000182050|chr12:85980390-85980390|T/-|frameshift_variant;MGAT4C|p.L276Yfs*2|1|0.09|ENSG00000182050|chr12:85979899-85979899|A/-|frameshift_variant;MGAT4C|p.N300Mfs*2|1|0.24|ENSG00000182050|chr12:85979827-85979827|T/-|frameshift_variant	ENSG00000182050|ENST00000611864|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2755126953125	2	526.274564	1050.53457	-1.2208	-0.00064247	2.2346	0.001176	1.0138	0.00053352	526.2756526452356	41.312	0.19812	41.312	41.226	41.424	0					22	11	3	0	0	0	0.1998	1	14561	14561		79.489	7.2458	1	151660			19373	6875	12247	12303	19665	19665					0.011328487179980584
KDLSRPVIG	9	Unmodified	_KDLSRPVIG_					0	0	0			REV__ENST00000509659.5_1_4:88898870-88904045:+|nuORF	REV__ENST00000509659.5_1_4:88898870-88904045:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7955017089844	2	492.795466	983.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.687	1	19.687	19.187	20.187	0								0	0	0	0.10826	1	5394	5394		69.628	9.5094	1		+		19374	19860	12248	12304	19666	19666					0.08393449197171776
KDLYANTV	8	Unmodified	_KDLYANTV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000431536.1_1_1:78239597-78239909:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2452392578125	2	462.245275	922.475997	-0.92959	-0.0004297	1.1379	0.00052601	0.20835	9.6308E-05	462.2458026165529	27.547	0.16275	27.547	27.439	27.601	0					6	3	2	0	0	0	0.65595	1	10004	10004		40.058	2.2467	1	78456			19375	1545;6995	12249	12305	19667	19667					0.011657921435244134
KDMDRFHGWKQ	11	Unmodified	_KDMDRFHGWKQ_					0	0	0			REV__ENST00000429242.7_3_19:19567968-19576198:+|nuORF	REV__ENST00000429242.7_3_19:19567968-19576198:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2359313964844	3	483.234827	1446.68265	0.33088	0.00015989	1.5535	0.0007507	1.8844	0.00091059	483.23551845438806	14.181	0.096508	14.181	14.115	14.212	0					4	2	2	0	0	0	0.67983	1	3402	3402		29.551	0.97402	1	61382	+		19376	19146	12250	12306	19668	19668					-0.02282163299810236
KDMFDSFH	8	Unmodified	_KDMFDSFH_					0	0	0			REV__ENSG00000095464|ENST00000371447|PDE6C	REV__ENSG00000095464|ENST00000371447|PDE6C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7188720703125	2	513.72111	1025.42767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.18	1	20.18	19.68	20.68	0								0	0	0	1.7419	1	5595	5595		33.516	0.70317	1		+		19377	13471	12251	12307	19669	19669					-0.08403024768040268
KDMITWIL	8	Unmodified	_KDMITWIL_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;ENST00000564540.5_1_15:43313466-43317626:-|nuORF	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.284912109375	2	510.283346	1018.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.948	1	30.948	30.448	31.448	0								0	0	0	1.7419	1	11621	11621		33.516	0	1				19378	5318	12252	12308	19670	19670					0.043604727192928294
KDMSTSLL	8	Unmodified	_KDMSTSLL_					0	0	0			REV__WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	REV__WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7348327636719	2	447.733686	893.452819	2.5588	0.0011457	-0.19564	-8.7595E-05	2.3632	0.0010581	447.7336893673517	12.721	0.13345	12.721	12.64	12.773	0					7	3	3	0	0	0	0.7126	1	2787	2787		31.955	1.4512	1	366110	+		19379	16657	12253	12309	19671	19671					0.0018303003456594524
KDMVTQASL	9	Unmodified	_KDMVTQASL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7577209472656	2	496.757692	991.500831	-0.059385	-2.95E-05	3.0652	0.0015227	3.0059	0.0014932	496.75971517545094	29.925	0.27347	29.925	29.836	30.109	0					17	10	2	0	0	0	0.099758	1	9478	9478		79.489	11.995	1	336040			19380	1085	12254	12310	19672	19672					0.004741039545820058
KDMVTQASL	9	Unmodified	_KDMVTQASL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7575378417969	2	496.757692	991.500831	-0.32813	-0.000163	1.3315	0.00066142	1.0033	0.00049842	496.75795180445937	30.203	0.44825	30.203	30.038	30.487	0					23	11	4	0	0	0	0.11635	1	10854	10854		75.652	9.223	1	1709600			19381	1085	12254	12310	19673	19673					0.004741039545820058
KDMVTQASL	9	Unmodified	_KDMVTQASL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7574157714844	2	496.757692	991.500831	-0.76411	-0.00037958	0.86355	0.00042897	0.099437	4.9396E-05	496.7580210333143	30.201	0.14037	30.201	30.122	30.263	0					6	3	2	0	0	0	0.31937	1	11260	11260		48.602	4.2244	1	287150			19382	1085	12254	12310	19674	19674					0.004741039545820058
KDNEIRKNT	9	Unmodified	_KDNEIRKNT_					0	0	0		tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	373.53863525390625	3	373.203522	1116.58874	0.49878	0.00018615	3.0462	0.0011369	3.545	0.001323	373.2047984387479	16.861	0.074402	16.861	16.821	16.896	0					5	3	2	0	0	0	0.16806	1	3918	3918		63.426	1.7352	1	106080			19383	22925	12255	12311	19675	19675					0.03510440869581544
KDNKVYIK	8	Unmodified	_KDNKVYIK_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.29833984375	2	504.297842	1006.58113	0.11994	6.0484E-05	-0.18237	-9.197E-05	-0.062436	-3.1486E-05	504.297776680753	27.851	0.79926	27.851	27.454	28.253	0					26	19	2	0	0	0	0.74405	1	9246	9246		27.882	2.3082	1	136420			19384	3950	12256	12312	19676	19676					0.07810333339944009
KDPCYFAPI	9	Unmodified	_KDPCYFAPI_					0	0	0			REV__ENSG00000138439|ENST00000392238|FAM117B	REV__ENSG00000138439|ENST00000392238|FAM117B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2589721679688	2	527.257328	1052.5001	0.10366	5.4654E-05	2.2589	0.001191	2.3626	0.0012457	527.2584104732523	14.729	0.37512	14.729	14.605	14.98	0					17	9	2	0	0	0	0.26904	1	3621	3621		53.351	2.016	1	1557600	+		19385	14979	12257	12313	19677	19677					-0.02404690694470446
KDPCYFAPI	9	Unmodified	_KDPCYFAPI_					0	0	0			REV__ENSG00000138439|ENST00000392238|FAM117B	REV__ENSG00000138439|ENST00000392238|FAM117B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2586669921875	2	527.257328	1052.5001	3.4718	0.0018305	-1.1112	-0.00058588	2.3606	0.0012446	527.2565944121822	14.634	0.41949	14.634	14.474	14.894	0					18	8	3	0	0	0	0.26904	1	3674	3674		53.351	0.41475	1	1241600	+		19386	14979	12257	12313	19678	19678					-0.02404690694470446
KDPGLGLKVA	10	Unmodified	_KDPGLGLKVA_					0	0	0		ENST00000560877.5_1_14:103799973-103800743:+|nuORF	ENST00000560877.5_1_14:103799973-103800743:+|nuORF	ENST00000560877.5_1_14:103799973-103800743:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.3056335449219	2	499.305667	996.596781	0.29414	0.00014687	-0.31445	-0.00015701	-0.02031	-1.0141E-05	499.3054799340716	18.943	0.35685	18.943	18.685	19.042	0					17	10	2	0	0	0	0.67464	1	4767	4767		14.137	3.8719	1	117630			19387	10695	12258	12314	19679	19679					0.09834619856985682
KDPKQIIR	8	Unmodified	_KDPKQIIR_					0	0	0		ENSG00000084463|ENST00000261167|WBP11;ENST00000544764.5_1_12:14952512-14954317:-|nuORF	ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.31109619140625	2	499.311284	996.608014	-0.72837	-0.00036368	-0.74669	-0.00037283	-1.4751	-0.00073651	499.31058022019795	23.989	0.61697	23.989	23.78	24.397	0					19	12	3	0	0	0	0.34592	1	8223	8223		87.754	13.78	1	577000			19388	1714	12259	12315	19680	19680					0.10957441951131841
KDPLLSSSM	9	Unmodified	_KDPLLSSSM_					0	0	0			REV__ENST00000368811.7_1_1:151955557-151955632:-|nuORF	REV__ENST00000368811.7_1_1:151955557-151955632:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2521667480469	2	489.252243	976.489932	0.78285	0.00038301	-0.71874	-0.00035165	0.064113	3.1367E-05	489.25201543287193	27.628	0.2199	27.628	27.542	27.762	0					12	5	3	0	0	0	0.1115	1	9664	9664		76.774	10.345	1	455700	+		19389	18614	12260	12316	19681	19681					0.00074701580308556
KDPLTSVSY	9	Unmodified	_KDPLTSVSY_					0	0	0		MRC1|p.Q384Lfs*12|1|0.03|ENSG00000260314|chr10:17849663-17849664|-/TTTAAAAGATTTGATTAAAA|frameshift_variant;nc|ENSG00000260314|P22897-2|MRC1;ENSG00000260314|ENST00000569591|MRC1	MRC1|p.Q384Lfs*12|1|0.03|ENSG00000260314|chr10:17849663-17849664|-/TTTAAAAGATTTGATTAAAA|frameshift_variant	MRC1|p.Q384Lfs*12|1|0.03|ENSG00000260314|chr10:17849663-17849664|-/TTTAAAAGATTTGATTAAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2635498046875	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.601	1	35.601	35.101	36.101	0								0	0	0	0.13137	1	13809	13809		64.207	3.2353	1				19390	8042	12261	12317	19682	19682					0.008860439694331035
KDPNAIAFGV	10	Unmodified	_KDPNAIAFGV_					0	0	0			REV__tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	REV__tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2786865234375	2	516.279649	1030.54475	-0.047264	-2.4401E-05	-2.0303	-0.0010482	-2.0776	-0.0010726	516.2788582424078	14.254	0.079001	14.254	14.221	14.3	0					4	2	2	0	0	0	0.57532	1	3069	3069		37.159	5.2042	1	85878	+		19391	21949	12262	12318	19683	19683					0.030694564432451443
KDPQLPSVPG	10	Unmodified	_KDPQLPSVPG_					0	0	0			REV__sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1	REV__sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2869262695312	2	519.284931	1036.55531	1.6276	0.00084517	1.5714	0.00081602	3.199	0.0016612	519.2862139569984	12.324	0.29386	12.324	12.265	12.559	0					12	7	3	0	0	0	0.39647	1	2747	2747		62.107	21.329	1	200070	+		19392	21581	12263	12319	19684	19684					0.03849439097666618
KDPRLPIL	8	Unmodified	_KDPRLPIL_					0	0	0		nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.3013916015625	2	476.302927	950.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.195	1	13.195	12.695	13.695	0								0	0	0	1.7419	1	3003	3003		20.482	1.1219	1				19393	4602	12264	12320	19685	19685					0.11402941065182404
KDPTAAAAALN	11	Unmodified	_KDPTAAAAALN_					0	0	0		SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant;nc|ENSG00000165915|Q96H72-2|SLC39A13;ENSG00000165915|ENST00000362021|SLC39A13	SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7806396484375	2	521.780013	1041.54547	1.6244	0.00084759	-0.82383	-0.00042986	0.80059	0.00041773	521.7795760831268	12.381	0.69899	12.381	12.091	12.79	0					57	19	4	0	0	0	0.18431	1	2698	2698		76.17	8.676	1	3837800			19394	5841	12265	12321	19686	19686					0.026362510922808724
KDPVKLLK	8	Unmodified	_KDPVKLLK_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.81353759765625	2	470.813128	939.611703	-2.3185	-0.0010916	2.3796	0.0011203	0.061034	2.8735E-05	470.8141310621511	27.272	0.30176	27.272	27.152	27.454	0					12	7	2	0	0	0	0.65148	1	8894	8894		40.778	3.6191	1	91890			19395	4241	12266	12322	19687	19687					0.13948111724994305
KDQERKKN	8	Unmodified	_KDQERKKN_					0	0	0			REV__tr|U7SNB2|U7SNB2_FUSNUMobA/VirD2-likenucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01848PE=4SV=1	REV__tr|U7SNB2|U7SNB2_FUSNUMobA/VirD2-likenucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01848PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2930297851562	2	523.291079	1044.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.469	1	13.469	12.969	13.969	0								0	0	0	1.7419	1	2710	2710		44.117	0	1		+		19396	21802	12267	12323	19688	19688					0.047104755607279
KDQLSVQWP	9	Unmodified	_KDQLSVQWP_					0	0	0			REV__CON__P00766	REV__CON__P00766	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.7922973632812	2	550.790381	1099.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.289	1	23.289	22.789	23.789	0								0	0	0	0.29774	1	7084	7084		35.618	6.4687	1		+	+	19397	12585	12268	12324	19689	19689					0.02040841471944077
KDQSATLFR	9	Unmodified	_KDQSATLFR_					0	0	0			REV__nc|ENSG00000168404|Q8NB16-2|MLKL	REV__nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2882080078125	2	533.288005	1064.56146	0.7151	0.00038136	0.87215	0.00046511	1.5873	0.00084646	533.2876617409363	13.226	0.21179	13.226	13.111	13.323	0					9	4	3	0	0	0	0.34452	1	3025	3025		24.519	0	1	251400	+		19398	16256	12269	12325	19690	19690					0.03175957329199264
KDRDVKKLS	9	Unmodified	_KDRDVKKLS_					0	0	0		tr|U7SS58|U7SS58_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01553PE=4SV=1	tr|U7SS58|U7SS58_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01553PE=4SV=1	tr|U7SS58|U7SS58_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01553PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.824951171875	2	544.824755	1087.63496	-0.21684	-0.00011814	0.44845	0.00024433	0.23161	0.00012619	545.3265445533442	22.289	0.10607	22.289	22.249	22.355	0					5	3	2	0	0	0	0.36892	1	6541	6541		44.377	3.2971	1	96375			19399	22734	12270	12326	19691	19691					0.09464505771666154
KDRFRLVA	8	Unmodified	_KDRFRLVA_					0	0	0			REV__ENST00000460508.3_1_2:74730137-74730440:-|nuORF	REV__ENST00000460508.3_1_2:74730137-74730440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.8030090332031	2	502.803626	1003.5927	0.064176	3.2268E-05	-1.7953	-0.00090269	-1.7311	-0.00087042	502.802894202516	24.77	0.16542	24.77	24.661	24.826	0					5	3	2	0	0	0	0.58686	1	8723	8723		49.442	14.241	1	96734	+		19400	19370	12271	12327	19692	19692					0.09104575153935457
KDRLHLKEP	9	Unmodified	_KDRLHLKEP_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.335205078125	2	568.332747	1134.65094	3.4645	0.001969	0.95161	0.00054083	4.4161	0.0025098	568.3331469274764	38.243	0.29223	38.243	38.143	38.435	0					16	6	3	0	0	0	0.35021	1	15010	15010		45.972	6.7194	1	420360			19401	1270	12272	12328	19693	19693					0.08900212008552444
KDRLKENK	8	Unmodified	_KDRLKENK_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8038940429688	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.147	1	12.147	11.647	12.647	0								0	0	0	1.7419	1	2518	2518		82.305	5.5309	1		+		19402	15220	12273	12329	19694	19694					0.07947950083121214
KDRPGPPQLK	10	Unmodified	_KDRPGPPQLK_					0	0	0			REV__ENST00000565652.1_1_15:75660495-75660924:-|nuORF	REV__ENST00000565652.1_1_15:75660495-75660924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.3345336914062	2	568.332747	1134.65094	1.955	0.0011111	1.9614	0.0011147	3.9164	0.0022258	568.3335149245083	38.308	0.23137	38.308	38.248	38.48	0					14	8	2	0	0	0	0.69544	1	15043	15043		22.58	1.6327	1	97996	+		19403	20340	12274	12330	19695	19695					0.08900212008552444
KDRQLAKCL	9	Unmodified	_KDRQLAKCL_					0	0	0			REV__ENST00000485119.1_1_1:229584871-229586298:-|nuORF	REV__ENST00000485119.1_1_1:229584871-229586298:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.80810546875	2	537.808051	1073.60155	-1.4338	-0.0007711	1.2768	0.00068667	-0.15699	-8.4428E-05	537.8087936549505	25.038	0.2334	25.038	24.937	25.171	0					6	5	2	0	0	0	0.28897	1	7909	7909		35.618	0	1	93483	+		19404	19648	12275	12331	19696	19696					0.06769180728088031
KDRRLTLE	8	Unmodified	_KDRRLTLE_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1;TET1|p.N1409Tfs*2|1|0.24|ENSG00000138336|chr10:68646950-68646950|A/-|frameshift_variant	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8043212890625	2	515.803823	1029.59309	0.75228	0.00038803	0.11709	6.0397E-05	0.86937	0.00044842	515.8038548533448	18.162	0.10806	18.162	18.101	18.209	0					6	2	3	0	0	0	0.51384	1	4692	4692		58.782	2.3482	1	175140			19405	4246	12276	12332	19697	19697					0.07947950083121214
KDRSLSKKR	9	Unmodified	_KDRSLSKKR_					0	0	0			REV__ZNF2|p.F183Lfs*38|1|0.21|ENSG00000275111|chr2:95181372-95181372|T/-|frameshift_variant	REV__ZNF2|p.F183Lfs*38|1|0.21|ENSG00000275111|chr2:95181372-95181372|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3446044921875	2	559.343646	1116.67274	1.8262	0.0010215	-0.40773	-0.00022806	1.4185	0.00079344	559.3434959905084	11.576	0.082187	11.576	11.541	11.623	0					4	2	2	0	0	0	0.61124	1	2285	2285		10.866	10.866	1	139510	+		19406	17829	12277	12333	19698	19698					0.11907016757118072
KDSAHGFLK	9	Unmodified	_KDSAHGFLK_					0	0	0		nc|ENSG00000091513|P02787|TF;ENSG00000091513|ENST00000402696|TF;TF|p.R327Qfs*11|1|0.3|ENSG00000091513|chr3:133757869-133757870|-/C|frameshift_variant;TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	nc|ENSG00000091513|P02787|TF	nc|ENSG00000091513|P02787|TF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7725524902344	2	501.771991	1001.52943	1.1343	0.00056915	0.93953	0.00047143	2.0738	0.0010406	501.77255557230563	19.475	0.66143	19.475	18.929	19.591	0					40	12	4	0	0	0	0.19605	1	5922	5922		62.107	3.3255	1	3287700			19407	1859	12278	12334	19699	19699					0.02872589646040069
KDSGPSSWGTR	11	Unmodified	_KDSGPSSWGTR_					0	0	0		ENST00000413145.1_1_9:6645977-6669573:+|nuORF	ENST00000413145.1_1_9:6645977-6669573:+|nuORF	ENST00000413145.1_1_9:6645977-6669573:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.285400390625	2	589.283451	1176.55235	-0.43915	-0.00025878	2.9637	0.0017464	2.5245	0.0014877	589.2854984284793	17.762	0.10925	17.762	17.691	17.801	0					7	3	3	0	0	0	0.12478	1	4525	4525		83.647	12.831	1	129200			19408	9330	12279	12335	19700	19700					-0.02886436027142736
KDSKPTRE	8	Unmodified	_KDSKPTRE_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.76092529296875	2	480.759081	959.503609	0.67948	0.00032667	2.7436	0.001319	3.423	0.0016457	480.76056082922986	24.402	0.26723	24.402	24.294	24.561	0					11	5	3	0	0	0	0.64144	1	8554	8554		42.396	1.618	1	937750	+		19409	14438	12280	12336	19701	19701					0.022236954037680334
KDSKQILSI	9	Unmodified	_KDSKQILSI_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;ENST00000497247.1_1_4:154523305-154524605:+|nuORF	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.5412902832031	3	344.541363	1030.60226	0.50489	0.00017396	0.48929	0.00016858	0.99418	0.00034254	344.54155334335206	19.302	0.28232	19.302	19.198	19.481	0					11	6	2	0	0	0	0.40353	1	5812	5812		41.427	0	1	725690			19410	3216	12281	12337	19702	19702					0.0881829864881638
KDSLIKIAV	9	Unmodified	_KDSLIKIAV_					0	0	0			REV__ATG2B|p.V1175I|1|0.4|ENSG00000066739|chr14:96315422-96315422|C/T|missense_variant	REV__ATG2B|p.V1175I|1|0.4|ENSG00000066739|chr14:96315422-96315422|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8170166015625	2	493.815867	985.617182	0.025563	1.2623E-05	0.0015234	7.5229E-07	0.027086	1.3376E-05	493.81585812727116	27.734	0.91973	27.734	27.454	28.374	0					38	22	2	0	0	0	0.12834	1	9264	9264		76.774	14.667	1	125940	+		19411	12245	12282	12338	19703	19703					0.12379790516808953
KDSLQKYL	8	Unmodified	_KDSLQKYL_					0	0	0		nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000514847.5_1_12:112150343-112159544:+|nuORF;nc|ENSG00000111271|Q6JQN1-4|ACAD10;ENST00000507135.5_1_12:112130513-112159479:+|nuORF	nc|ENSG00000111271|Q6JQN1-2|ACAD10	nc|ENSG00000111271|Q6JQN1-2|ACAD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.78179931640625	2	497.782025	993.549496	-0.71792	-0.00035737	0.18712	9.3147E-05	-0.5308	-0.00026422	497.78208981929265	28.967	0.31369	28.967	28.86	29.174	0					13	6	3	0	0	0	0.46013	1	10568	10568		64.207	7.7735	1	605750			19412	2658	12283	12339	19704	19704					0.05246340585983944
KDSLSNGVPS	10	Unmodified	_KDSLSNGVPS_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.25665283203125	2	502.256371	1002.49819	-0.5339	-0.00026815	-0.44599	-0.000224	-0.97989	-0.00049215	502.25652687812504	21.744	0.46788	21.744	21.39	21.858	0					28	9	4	0	0	0	0.23612	1	7201	7201		75.043	7.5496	1	389130			19413	5527	12284	12340	19705	19705					-0.0029602817870681974
KDSPYNLF	8	Unmodified	_KDSPYNLF_					0	0	0			REV__CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant	REV__CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.24737548828125	2	492.245275	982.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.039	1	12.039	11.539	12.539	0								0	0	0	1.7419	1	2613	2613		37.159	0	1		+		19414	12356	12285	12341	19706	19706					-0.015942078564762596
KDSRKLKK	8	Unmodified	_KDSRKLKK_					0	0	0		ENST00000482232.1_1_7:74167428-74167473:+|nuORF	ENST00000482232.1_1_7:74167428-74167473:+|nuORF	ENST00000482232.1_1_7:74167428-74167473:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.82470703125	2	501.824558	1001.63456	0.95994	0.00048172	-1.1116	-0.00055784	-0.15168	-7.6118E-05	501.8239702990795	11.938	2.1211	11.938	11.819	13.94	0					88	50	3	0	0	0	0.27512	1	2730	2730		90.777	8.4716	1	8683300			19415	9966	12286	12342	19707	19707					0.13381130842469702
KDSSKEQAR	9	Unmodified	_KDSSKEQAR_					0	0	0		nc|ENSG00000164877|Q8IY33-2|MICALL2;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;MICALL2|p.P533Rfs*36|1|0.4|ENSG00000164877|chr7:1442305-1442305|G/-|frameshift_variant;nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF	nc|ENSG00000164877|Q8IY33-2|MICALL2	nc|ENSG00000164877|Q8IY33-2|MICALL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2857666015625	2	524.772719	1047.53089	1.1536	0.00060538	3.6967	0.0019399	4.8503	0.0025453	524.7747926602183	32.242	0.18727	32.242	32.14	32.327	0					8	5	2	0	0	0	0.33044	1	11168	11168		47.657	1.6851	1	101390			19416	5737	12287	12343	19708	19708					0.009021789441476358
KDSTLIMQL	9	Unmodified	_KDSTLIMQL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG;nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN;ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENSG00000134308|ENST00000238081|YWHAQ;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ	ENSG00000128245|ENST00000248975|YWHAH;nc|ENSG00000175793|P31947-2|SFN;ENSG00000166913|ENST00000353703|YWHAB;ENSG00000134308|ENST00000238081|YWHAQ;nc|ENSG00000108953|P62258-2|YWHAE;ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7896728515625	2	524.788992	1047.56343	0.42486	0.00022296	-0.059674	-3.1316E-05	0.36518	0.00019164	524.7889152244653	44.167	0.1789	44.167	44.1	44.279	0					22	11	3	0	0	0	0.21263	1	14360	14360		60.118	10.677	1	205120			19417	5946;5741;3531;3911;2558;6576	12288	12344	19709	19709					0.04155250022790824
KDSTPQSGAL	10	Unmodified	_KDSTPQSGAL_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2560119628906	2	502.256371	1002.49819	-0.072901	-3.6615E-05	-0.55999	-0.00028126	-0.63289	-0.00031787	502.2563097101259	21.818	0.56942	21.818	21.42	21.99	0					34	13	3	0	0	0	0.2538	1	6962	6962		72.879	0.63601	1	1019400	+		19418	14146	12289	12345	19710	19710					-0.0029602817870681974
KDSTVLLI	8	Unmodified	_KDSTVLLI_					0	0	0		nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7732238769531	2	444.773668	887.532783	-0.38093	-0.00016943	-0.30604	-0.00013612	-0.68697	-0.00030555	444.77352076203556	48.946	0.20158	48.946	48.827	49.029	0					19	12	2	0	0	0	0.68432	1	17718	17718		35.618	3.6634	1	90280			19419	4809	12290	12346	19711	19711					0.08451839700046548
KDSVKKLGTGT	11	Unmodified	_KDSVKKLGTGT_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.3306884765625	2	567.32987	1132.64519	0.62088	0.00035224	0.65899	0.00037386	1.2799	0.00072611	567.3301234315409	51.998	1.196	51.998	51.652	52.848	0					160	74	3	0	0	0	0.70609	1	16843	16843		27.047	7.0505	1	264620			19420	241	12291	12347	19712	19712					0.08417068706239661
KDSVKKSVE	9	Unmodified	_KDSVKKSVE_					0	0	0		ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2900695800781	2	510.290214	1018.56587	-0.010169	-5.1892E-06	0.43037	0.00021961	0.4202	0.00021442	510.29031232171036	13.152	0.1546	13.152	13.034	13.189	0					11	4	3	0	0	0	0.22837	1	2933	2933		58.23	0.41864	1	403140			19421	9348	12292	12348	19713	19713					0.05733421752097456
KDSYLDFIE	9	Unmodified	_KDSYLDFIE_					0	0	0		tr|U7SIN9|U7SIN9_FUSNUV-typeprotonATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpEPE=3SV=1	tr|U7SIN9|U7SIN9_FUSNUV-typeprotonATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpEPE=3SV=1	tr|U7SIN9|U7SIN9_FUSNUV-typeprotonATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpEPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2745971679688	2	565.274229	1128.53391	1.7173	0.00097076	-1.905	-0.0010769	-0.18768	-0.00010609	565.273093729001	23.675	0.46268	23.675	23.518	23.981	0					24	9	4	0	0	0	0.034359	1	8072	8072		104.75	11.551	1	1566000			19422	22601	12293	12349	19714	19714					-0.025219907217206128
KDTARVQGV	9	Unmodified	_KDTARVQGV_					0	0	0			REV__CDHR3|p.T478I|1|0.3|ENSG00000128536|chr7:106017852-106017852|C/T|missense_variant	REV__CDHR3|p.T478I|1|0.3|ENSG00000128536|chr7:106017852-106017852|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.275146484375	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.096	1	16.096	15.596	16.596	0								0	0	0	0.14517	1	3608	3608		60.972	5.4677	1		+		19423	12402	12294	12350	19715	19715					0.047876881577167296
KDTERLEGI	9	Unmodified	_KDTERLEGI_					0	0	0			REV__tr|U7SG99|U7SG99_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02230PE=3SV=1	REV__tr|U7SG99|U7SG99_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02230PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7864990234375	2	530.785296	1059.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.24	1	27.24	26.74	27.74	0								0	0	0	0.30504	1	8885	8885		34.173	1.3601	1		+		19424	21689	12295	12351	19716	19716					0.028642337467317702
KDTFLVGSERK	11	Unmodified	_KDTFLVGSERK_					0	0	0			REV__LEPR|p.L1094F|1|0.29|ENSG00000116678|chr1:65636799-65636799|G/T|missense_variant	REV__LEPR|p.L1094F|1|0.29|ENSG00000116678|chr1:65636799-65636799|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.2392272949219	3	427.238343	1278.6932	0.285	0.00012176	-0.18227	-7.7873E-05	0.10273	4.3888E-05	427.2384141187333	24.032	0.10893	24.032	23.932	24.041	0					4	2	2	0	0	0	0.75314	1	8030	8030		22.562	0	1	54383	+		19425	20838	12296	12352	19717	19717					0.0650014262625973
KDTGSLLLL	9	Unmodified	_KDTGSLLLL_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2921447753906	2	480.292225	958.569897	-0.64492	-0.00030975	0.35782	0.00017186	-0.2871	-0.00013789	480.29238324581615	24.636	0.20947	24.636	24.53	24.739	0					11	4	3	0	0	0	0.16002	1	8534	8534		66.429	5.4573	1	779300			19426	5663	12297	12353	19718	19718					0.08895511245816579
KDTIRAVLGP	10	Unmodified	_KDTIRAVLGP_					0	0	0			REV__ENSG00000129988|ENST00000217407|LBP	REV__ENSG00000129988|ENST00000217407|LBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.322021484375	2	535.321848	1068.62914	0.13707	7.3379E-05	0.46379	0.00024828	0.60087	0.00032166	535.321964254643	22.904	0.31927	22.904	22.709	23.029	0					25	11	3	0	0	0	0.46215	1	6764	6764		49.442	1.7842	1	667320	+		19427	14563	12298	12354	19719	19719					0.09757407259962747
KDTIRKIQ	8	Unmodified	_KDTIRKIQ_					0	0	0			REV__nc|ENSG00000092531|O00161-2|SNAP23	REV__nc|ENSG00000092531|O00161-2|SNAP23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3083801269531	2	501.308741	1000.60293	0.67601	0.00033889	-1.046	-0.00052436	-0.36997	-0.00018547	501.3081769324949	14.579	0.21004	14.579	14.456	14.666	0					11	5	3	0	0	0	0.24328	1	3576	3576		90.777	0	1	437830	+		19428	13455	12299	12355	19720	19720					0.10265138088516323
KDTIRKIQ	8	Unmodified	_KDTIRKIQ_					0	0	0			REV__nc|ENSG00000092531|O00161-2|SNAP23	REV__nc|ENSG00000092531|O00161-2|SNAP23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.30950927734375	2	501.308741	1000.60293	0.032168	1.6126E-05	-0.30533	-0.00015306	-0.27316	-0.00013694	501.308468509827	14.565	0.29343	14.565	14.42	14.714	0					11	6	3	0	0	0	0.27635	1	3790	3790		68.787	7.8149	1	343690	+		19429	13455	12299	12355	19721	19721					0.10265138088516323
KDTIRKIQ	8	Unmodified	_KDTIRKIQ_					0	0	0			REV__nc|ENSG00000092531|O00161-2|SNAP23	REV__nc|ENSG00000092531|O00161-2|SNAP23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.30914306640625	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.338	1	14.338	13.838	14.838	0								0	0	0	1.7419	1	3019	3019		73.975	0	1		+		19430	13455	12299	12355	19722	19722					0.10265138088516323
KDTKQILR	8	Unmodified	_KDTKQILR_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.3097839355469	2	501.308741	1000.60293	0.43121	0.00021617	-0.1524	-7.6398E-05	0.27882	0.00013977	501.30914419992126	14.257	0.11	14.257	14.183	14.293	0					6	4	2	0	0	0	0.41	1	2920	2920		58.782	5.4305	1	49475			19431	6946	12300	12356	19723	19723					0.10265138088504955
KDTLDKSING	10	Unmodified	_KDTLDKSING_					0	0	0			REV__RBBP6|p.K1666T|1|0.37|ENSG00000122257|chr16:24572063-24572063|A/C|missense_variant	REV__RBBP6|p.K1666T|1|0.37|ENSG00000122257|chr16:24572063-24572063|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7894897460938	2	545.790578	1089.5666	1.1967	0.00065313	-0.40994	-0.00022374	0.78672	0.00042939	545.7902784033032	14.422	0.18226	14.422	14.276	14.459	0					15	9	2	0	0	0	0.27065	1	2955	2955		70.816	1.1886	1	189570	+		19432	21447	12301	12357	19724	19724					0.0254021640114388
KDTLHWIPP	9	Unmodified	_KDTLHWIPP_					0	0	0			REV__nc|ENSG00000160710|P55265-3|ADAR	REV__nc|ENSG00000160710|P55265-3|ADAR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.5365295410156	3	369.537953	1105.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.956	1	26.956	26.456	27.456	0								0	0	0	0.3119	1	8536	8536		32.812	15.344	1		+		19433	15760	12302	12358	19725	19725					0.0434573571421879
KDTPWVGDL	9	Unmodified	_KDTPWVGDL_					0	0	0			REV__nc|ENSG00000110713|P52948-4|NUP98	REV__nc|ENSG00000110713|P52948-4|NUP98	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.765625	2	515.763832	1029.51311	3.2637	0.0016833	0.16905	8.7189E-05	3.4328	0.0017705	515.7640199323788	20.796	0.56505	20.796	20.511	21.076	0					28	11	4	0	0	0	0.19605	1	6661	6661		62.107	1.1355	1	2187100	+		19434	13943	12303	12359	19726	19726					-0.00046536310719602625
KDTRKSKGV	9	Unmodified	_KDTRKSKGV_					0	0	0		ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant;ZCRB1|p.W185Mfs*13|2|0.39|ENSG00000139168|chr12:42313168-42313169|-/T|frameshift_variant;ENSG00000139168|ENST00000266529|ZCRB1	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.8038330078125	2	509.803823	1017.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.716	1	12.716	12.216	13.216	0								0	0	0	0.31623	1	2774	2774		31.955	9.995	1				19435	4310	12304	12360	19727	19727					0.08499950083137264
KDTRLLKQ	8	Unmodified	_KDTRLLKQ_					0	0	0			REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2	REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3088684082031	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.289	1	14.289	13.789	14.789	0								0	0	0	1.7419	1	3071	3071		30.504	1.3541	1		+		19436	15049	12305	12361	19728	19728					0.10265138088504955
KDTSKIKQ	8	Unmodified	_KDTSKIKQ_					0	0	0		ENST00000449529.1_1_10:18944066-18948134:-|nuORF;ENST00000414939.1_1_10:18944066-18947184:-|nuORF	ENST00000449529.1_1_10:18944066-18948134:-|nuORF	ENST00000449529.1_1_10:18944066-18948134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2793884277344	2	474.279649	946.544745	0.60876	0.00028872	-1.3027	-0.00061784	-0.69392	-0.00032911	474.2791681359458	11.957	5.5556	11.957	11.762	17.318	0					339	121	5	0	0	0	0.37144	1	3235	3235		74.255	0	1	515490000			19437	9343	12306	12362	19729	19729					0.06933456443221075
KDTSKLKK	8	Unmodified	_KDTSKLKK_					0	0	0			REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.29742431640625	2	474.297842	946.581131	0.60882	0.00028876	-1.4893	-0.00070638	-0.88049	-0.00041762	474.29705770475294	12.39	0.13537	12.39	12.304	12.439	0					9	3	3	0	0	0	0.28444	1	2784	2784		87.696	4.0494	1	6462800	+		19438	22151	12307	12363	19730	19730					0.10570333339933313
KDTSPKQRI	9	Unmodified	_KDTSPKQRI_					0	0	0		nc|ENSG00000102385|Q13474-2|DRP2;ENSG00000102385|ENST00000395209|DRP2	nc|ENSG00000102385|Q13474-2|DRP2	nc|ENSG00000102385|Q13474-2|DRP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8096313476562	2	536.809105	1071.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.307	1	15.307	14.807	15.807	0								0	0	0	0.15687	1	4158	4158		58.23	0.41864	1				19439	2170	12308	12364	19731	19731					0.07071932737562747
KDTSQLKK	8	Unmodified	_KDTSQLKK_					0	0	0		ENST00000495426.1_1_7:33545212-33573811:+|nuORF;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9	ENST00000495426.1_1_7:33545212-33573811:+|nuORF	ENST00000495426.1_1_7:33545212-33573811:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.279541015625	2	474.279649	946.544745	-1.5989	-0.00075833	0.52585	0.0002494	-1.0731	-0.00050893	474.27988913859997	11.674	1.2733	11.674	11.587	12.86	0					137	74	4	0	0	0	0.30437	1	2238	2238		82.305	0	1	57885000			19440	3268	12309	12365	19732	19732					0.06933456443232444
KDVASGHKG	9	Unmodified	_KDVASGHKG_					0	0	0		ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.7404479980469	2	449.740691	897.466829	0.87539	0.0003937	-2.0921	-0.00094089	-1.2167	-0.00054719	449.73983608249466	12.97	0.15538	12.97	12.822	12.978	0					6	3	2	0	0	0	0.30841	1	2866	2866		49.536	3.5638	1	43390			19441	1522	12310	12366	19733	19733					0.013994435778613479
KDVAVMQL	8	Unmodified	_KDVAVMQL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.25201416015625	2	452.252046	902.489538	-0.52037	-0.00023534	1.0828	0.00048969	0.56242	0.00025435	452.25247389846817	36.169	0.20039	36.169	36.046	36.247	0					11	5	3	0	0	0	0.67836	1	13609	13609		36.447	7.2767	1	168660			19442	3256	12311	12367	19734	19734					0.0343932665111879
KDVCLNLK	8	Carbamidomethyl (C)	_KDVC(Carbamidomethyl (C))LNLK_	KDVC(1)LNLK		KDVC(55)LNLK		0	1	0			REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2757873535156	2	495.276052	988.537551	-0.65817	-0.00032598	-0.15774	-7.8125E-05	-0.81591	-0.0004041	495.2761272163771	30.351	0.21154	30.351	30.197	30.408	0					9	4	3	0	0	0	0.5535	1	11241	11241		54.776	8.8041	1	151290	+		19443	14978	12312	12368	19735	19735	555				0.042824005711622704
KDVEQRLI	8	Unmodified	_KDVEQRLI_					0	0	0		tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7929992675781	2	500.792924	999.571294	0.019541	9.7861E-06	-0.98232	-0.00049194	-0.96278	-0.00048215	500.79289067718474	23.221	0.26724	23.221	23.012	23.279	0					7	5	2	0	0	0	0.51384	1	7960	7960		58.782	5.4305	1	243270			19444	22579	12313	12369	19736	19736					0.07149145334562945
KDVEQRLI	8	Unmodified	_KDVEQRLI_					0	0	0		tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7933654785156	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.08	1	23.08	22.58	23.58	0								0	0	0	1.7419	1	6984	6984		74.255	2.3776	1				19445	22579	12313	12369	19737	19737					0.07149145334562945
KDVEQRLI	8	Unmodified	_KDVEQRLI_					0	0	0		tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.79290771484375	2	500.792924	999.571294	-0.62354	-0.00031227	-0.21483	-0.00010759	-0.83838	-0.00041985	500.79315067798774	23.192	0.46224	23.192	22.939	23.401	0					18	9	3	0	0	0	0.37144	1	7816	7816		74.255	8.7897	1	639270			19446	22579	12313	12369	19738	19738					0.07149145334562945
KDVGGNEQRL	10	Unmodified	_KDVGGNEQRL_					0	0	0			REV__LHX9|p.P345Rfs*18|1|0.21|ENSG00000143355|chr1:197929096-197929096|C/-|frameshift_variant	REV__LHX9|p.P345Rfs*18|1|0.21|ENSG00000143355|chr1:197929096-197929096|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.2941284179688	2	558.293819	1114.57309	-0.47657	-0.00026606	0.090624	5.0595E-05	-0.38594	-0.00021547	558.2938282598608	30.836	0.19215	30.836	30.731	30.923	0					9	6	2	0	0	0	0.61238	1	10157	10157		32.751	7.1765	1	76698	+		19447	15183	12314	12370	19739	19739					0.02038154352521815
KDVGGRLQVG	10	Unmodified	_KDVGGRLQVG_					0	0	0		CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;ENST00000467956.1_1_3:33731266-33759494:-|nuORF;CLASP2|p.N188Kfs*2|1|0.21|ENSG00000163539|chr3:33619657-33619658|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7958984375	2	514.795998	1027.57744	0.024433	1.2578E-05	0.60887	0.00031345	0.63331	0.00032602	514.7962233316293	14.492	0.17118	14.492	14.406	14.578	0					8	4	2	0	0	0	0.46215	1	3568	3568		49.442	0	1	1833600			19448	548	12315	12371	19740	19740					0.06475663566084222
KDVHWPSRE	9	Unmodified	_KDVHWPSRE_					0	0	0		ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.2914428710938	2	577.291079	1152.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.822	1	13.822	13.322	14.322	0								0	0	0	0.26578	1	3301	3301		26.693	0	1				19449	11013	12316	12372	19741	19741					-0.0025752443930286972
KDVKNGSVI	9	Unmodified	_KDVKNGSVI_					0	0	0			REV__tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1	REV__tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2800598144531	2	480.279649	958.544745	-1.3879	-0.00066659	-1.7134	-0.00082291	-3.1013	-0.0014895	480.27854328568395	29.934	0.30066	29.934	29.752	30.053	0					19	11	2	0	0	0	0.25716	1	9743	9743		54.776	6.8607	1	91659	+		19450	22078	12317	12373	19742	19742					0.06381456443239131
KDVKVQVM	8	Unmodified	_KDVKVQVM_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.77288818359375	2	473.773145	945.531738	-0.01811	-8.5799E-06	0.2593	0.00012285	0.24119	0.00011427	473.7729948578678	23.11	0.098888	23.11	23.058	23.157	0					5	3	2	0	0	0	0.59773	1	6649	6649		49.442	12.282	1	59691			19451	3710	12318	12374	19743	19743					0.056793020595023336
KDVKVQVM	8	Unmodified	_KDVKVQVM_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.77294921875	2	473.773145	945.531738	0.26635	0.00012619	-1.0205	-0.00048348	-0.75415	-0.0003573	473.7727281976284	23.447	0.4044	23.447	23.134	23.538	0					13	9	3	0	0	0	0.24806	1	7776	7776		104.75	30.772	1	550300			19452	3710	12318	12374	19744	19744					0.056793020595023336
KDVKVQVM	8	Unmodified	_KDVKVQVM_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7729187011719	2	473.773145	945.531738	-0.12147	-5.7548E-05	-0.55079	-0.00026095	-0.67226	-0.0003185	473.7730073887171	23.37	0.21645	23.37	23.263	23.479	0					9	4	3	0	0	0	0.2498	1	8053	8053		101.6	19.296	1	684040			19453	3710	12318	12374	19745	19745					0.056793020595023336
KDVKVQVM	8	Unmodified	_KDVKVQVM_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7728271484375	2	473.773145	945.531738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.37	1	23.37	22.87	23.87	0								0	0	0	1.7419	1	7914	7914		125.81	38.06	1				19454	3710	12318	12374	19746	19746					0.056793020595023336
KDVLARSH	8	Unmodified	_KDVLARSH_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2947998046875	2	463.264333	924.514114	-0.14389	-6.6661E-05	-0.7204	-0.00033374	-0.86429	-0.0004004	463.26434924727766	14.757	0.26614	14.757	14.596	14.862	0					11	5	3	0	0	0	0.48092	1	3931	3931		62.107	1.1355	1	209610	+		19455	16111	12319	12375	19747	19747					0.04883722848853722
KDVLARSH	8	Unmodified	_KDVLARSH_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7562255859375	2	463.264333	924.514114	-0.47465	-0.00021989	-0.82877	-0.00038394	-1.3034	-0.00060383	463.26430360184406	14.729	0.21901	14.729	14.609	14.828	0					6	4	2	0	0	0	0.51931	2	3737	3715;3737		58.23	5.3996	1	133740	+		19456	16111	12319	12375	19748;19749	19749					0.04883722848853722
KDVLIQGL	8	Unmodified	_KDVLIQGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2735290527344	2	443.273835	884.533118	-0.35508	-0.0001574	0.22792	0.00010103	-0.12716	-5.6366E-05	443.27379002664196	40.175	0.2659	40.175	40.068	40.334	0					24	11	3	0	0	0	0.32597	1	15302	15302		79.713	2.9384	1	195010			19457	8001	12320	12376	19750	19750					0.08623259419891838
KDVLSVAF	8	Unmodified	_KDVLSVAF_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.7525939941406	2	439.752736	877.490919	-0.36355	-0.00015987	0.28303	0.00012446	-0.080518	-3.5408E-05	439.7527389919372	43.946	0.21518	43.946	43.825	44.04	0					25	11	3	0	0	0	0.35045	1	16510	16510		76.774	17.992	1	212650			19458	7716	12321	12377	19751	19751					0.047272840115169856
KDVNQQEF	8	Unmodified	_KDVNQQEF_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2433166503906	2	504.243264	1006.47197	-0.057072	-2.8778E-05	0.2766	0.00013947	0.21952	0.00011069	504.24336547650745	23.39	0.40342	23.39	23.161	23.565	0					15	9	3	0	0	0	0.23879	1	7725	7725		134.77	44.396	1	745530			19459	2349	12322	12378	19752	19752					-0.031002973501813358
KDVNQQEF	8	Unmodified	_KDVNQQEF_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2433166503906	2	504.243264	1006.47197	1.029	0.00051885	-0.49256	-0.00024837	0.53641	0.00027048	504.2430550482771	23.304	0.21595	23.304	23.145	23.361	0					7	4	3	0	0	0	0.31979	1	8022	8022		80.455	18.347	1	862460			19460	2349	12322	12378	19753	19753					-0.031002973501813358
KDVNQQEF	8	Unmodified	_KDVNQQEF_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2436218261719	2	504.243264	1006.47197	2.9313	0.0014781	-1.1678	-0.00058885	1.7635	0.00088921	504.2425908056986	23.31	0.31818	23.31	23.1	23.418	0					15	6	3	0	0	0	0.2592	1	7896	7896		96.034	35.915	1	961820			19461	2349	12322	12378	19754	19754					-0.031002973501813358
KDVSAANRL	9	Unmodified	_KDVSAANRL_					0	0	0		MSC|p.E194D|1|0.33|ENSG00000178860|chr8:71842700-71842700|T/G|missense_variant	MSC|p.E194D|1|0.33|ENSG00000178860|chr8:71842700-71842700|T/G|missense_variant	MSC|p.E194D|1|0.33|ENSG00000178860|chr8:71842700-71842700|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.274658203125	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.327	1	16.327	15.827	16.827	0								0	0	0	0.040851	1	4497	4497		90.37	8.1293	1				19462	11377	12323	12379	19755	19755					0.04787688157693992
KDVVEIAVP	9	Unmodified	_KDVVEIAVP_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.28729248046875	2	485.2844	968.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.887	1	12.887	12.387	13.387	0								0	0	0	0.28996	1	2856	2856		37.159	1.5408	1				19463	4359	12324	12380	19756	19756					0.06871224728752168
KDWSKVVLAY	10	Unmodified	_KDWSKVVLAY_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1;ENST00000482209.1_1_12:6978793-6979262:+|nuORF	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.8352661132812	2	604.837331	1207.66011	-1.9143	-0.0011579	-1.1245	-0.00068014	-3.0388	-0.001838	604.8365740162055	20.761	0.28965	20.761	20.586	20.876	0					14	6	3	0	0	0	0.41055	1	5892	5892		60.118	19.34	1	324610			19464	2684	12325	12381	19757	19757					0.06458560574242256
KDYNVLVM	8	Unmodified	_KDYNVLVM_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2563171386719	2	491.257328	980.500103	-0.52067	-0.00025578	1.2197	0.00059919	0.69903	0.0003434	491.2573730570568	39.984	0.23141	39.984	39.844	40.075	0					13	8	2	0	0	0	0.63077	1	15221	15221		44.117	1.6423	1	96381			19465	2819	12326	12382	19758	19758					0.00907309305534909
KDYTKKLR	8	Unmodified	_KDYTKKLR_					0	0	0			REV__AKAP13|p.G2098D|1|0.26|ENSG00000170776|chr15:85722031-85722031|G/A|missense_variant	REV__AKAP13|p.G2098D|1|0.26|ENSG00000170776|chr15:85722031-85722031|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.3168334960938	2	526.316566	1050.61858	0.099987	5.2625E-05	0.78734	0.00041439	0.88733	0.00046702	526.3171634604992	17.891	0.18734	17.891	17.804	17.992	0					6	4	2	0	0	0	0.57171	1	5142	5142		51.335	1.7994	1	424350	+		19466	12126	12327	12383	19759	19759					0.09529424605557324
KDYWRNAR	8	Unmodified	_KDYWRNAR_					0	0	0			REV__CHAT|p.G417R|1|0.14|ENSG00000070748|chr10:49646642-49646642|G/A|missense_variant	REV__CHAT|p.G417R|1|0.14|ENSG00000070748|chr10:49646642-49646642|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7857666015625	2	554.785964	1107.55738	-1.0946	-0.00060724	0.23791	0.00013199	-0.85664	-0.00047525	554.7860798168675	27.697	0.38755	27.697	27.565	27.952	0					31	9	5	0	0	0	0.41952	1	9080	9080		68.485	68.485	1	7299700	+		19467	12451	12328	12384	19760	19760					0.00789912626100886
KEAAAEAKK	9	Unmodified	_KEAAAEAKK_					0	0	0		ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.27178955078125	2	473.271824	944.529095	-0.53352	-0.0002525	0.60516	0.00028641	0.071642	3.3906E-05	473.27213117178366	14.649	0.24878	14.649	14.445	14.693	0					12	6	3	0	0	0	0.056004	1	3603	3603		93.143	2.5424	1	1323500			19468	4719	12329	12385	19761	19761					0.054611699261727153
KEAATAATAVA	11	Unmodified	_KEAATAATAVA_					0	0	0			REV__nc|ENSG00000169057|P51608|MECP2	REV__nc|ENSG00000169057|P51608|MECP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2749938964844	2	502.274564	1002.53457	0.13867	6.965E-05	1.0675	0.00053617	1.2062	0.00060582	502.27565777800874	16.809	0.11717	16.809	16.741	16.859	0					5	3	2	0	0	0	0.3077	1	4072	4072		44.377	0	1	136210	+		19469	16290	12330	12386	19762	19762					0.03340848717982681
KEAEKSPQL	9	Unmodified	_KEAEKSPQL_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000471223.1_1_1:3549956-3550340:-|nuORF;ENST00000469643.1_1_1:3549956-3551942:-|nuORF;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7835693359375	2	515.282389	1028.55022	0.78386	0.00040391	-0.75432	-0.00038869	0.029532	1.5217E-05	515.2820929105225	18.451	0.42043	18.451	18.207	18.627	0					18	8	3	0	0	0	0.095583	1	5641	5641		80.455	6.1996	1	204200			19470	2972	12331	12387	19763	19763					0.03709135235044414
KEAEKSPQL	9	Unmodified	_KEAEKSPQL_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000471223.1_1_1:3549956-3550340:-|nuORF;ENST00000469643.1_1_1:3549956-3551942:-|nuORF;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2835693359375	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.408	1	18.408	17.908	18.908	0								0	0	0	0.241	1	4797	4797		45.022	7.2107	1				19471	2972	12331	12387	19764	19764					0.03709135235044414
KEAEKSPQL	9	Unmodified	_KEAEKSPQL_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000471223.1_1_1:3549956-3550340:-|nuORF;ENST00000469643.1_1_1:3549956-3551942:-|nuORF;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2822265625	2	515.282389	1028.55022	0.15435	7.9533E-05	-0.19026	-9.8037E-05	-0.035909	-1.8503E-05	515.2823042602502	18.559	0.41355	18.559	18.223	18.636	0					21	8	3	0	0	0	0.076532	1	5577	5577		85.862	18.368	1	298930			19472	2972	12331	12387	19765	19765					0.03709135235044414
KEAEKVLR	8	Unmodified	_KEAEKVLR_					0	0	0		ENST00000495641.5_1_9:95858537-95872895:+|nuORF;ENST00000466929.5_1_9:95858543-95872895:+|nuORF	ENST00000495641.5_1_9:95858537-95872895:+|nuORF	ENST00000495641.5_1_9:95858537-95872895:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7951965332031	2	486.795466	971.57638	-0.54478	-0.00026519	-0.5968	-0.00029052	-1.1416	-0.00055572	486.79519221936874	26.606	0.27051	26.606	26.4	26.671	0					11	5	3	0	0	0	0.66095	1	9437	9437		39.253	2.0937	1	220540			19473	9793	12332	12388	19766	19766					0.08945449197176458
KEAERTAEL	9	Unmodified	_KEAERTAEL_					0	0	0		CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290;CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant;CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.M1079Cfs*9|1|0.24|ENSG00000198707|chr12:88093844-88093844|T/-|frameshift_variant;CEP290|p.E1553Kfs*4|1|0.52|ENSG00000198707|chr12:88084634-88084634|T/-|frameshift_variant;CEP290|p.N882Ifs*10|1|0.2|ENSG00000198707|chr12:88106847-88106847|T/-|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.77783203125	2	523.77747	1045.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.82	1	31.82	31.32	32.32	0								0	0	0	0.0124	1	12037	12037		107.01	0	1				19474	484	12333	12389	19767	19767					0.019439472296653548
KEAERTAEL	9	Unmodified	_KEAERTAEL_					0	0	0		CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290;CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant;CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.M1079Cfs*9|1|0.24|ENSG00000198707|chr12:88093844-88093844|T/-|frameshift_variant;CEP290|p.E1553Kfs*4|1|0.52|ENSG00000198707|chr12:88084634-88084634|T/-|frameshift_variant;CEP290|p.N882Ifs*10|1|0.2|ENSG00000198707|chr12:88106847-88106847|T/-|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7778930664062	2	523.77747	1045.54039	1.6258	0.00085156	-1.1292	-0.00059146	0.4966	0.00026011	523.7769956872118	31.76	0.56979	31.76	31.65	32.219	0					15	11	3	0	0	0	0.10915	1	11918	11918		77.318	0	1	1134900			19475	484	12333	12389	19768	19768					0.019439472296653548
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7710571289062	2	540.769645	1079.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.672	1	19.672	19.172	20.172	0								0	0	0	0.058887	1	5134	5134		83.647	16.153	1			+	19476	11631;11552;11562;11715;8927	12334	12390	19769	19769					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7701416015625	2	540.769645	1079.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.661	1	19.661	19.161	20.161	0								0	0	0	0.077333	1	5128	5128		78.264	16.156	1			+	19477	11631;11552;11562;11715;8927	12334	12390	19770	19770					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7699584960938	2	540.769645	1079.52474	1.8656	0.0010089	-1.0328	-0.0005585	0.83281	0.00045036	540.7689199239041	19.997	0.15822	19.997	19.937	20.095	0					8	3	3	0	0	0	0.0088974	1	6141	6141		143.37	53.004	1	520210		+	19478	11631;11552;11562;11715;8927	12334	12390	19771	19771					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7702026367188	2	540.769645	1079.52474	1.9104	0.0010331	-0.76848	-0.00041557	1.1419	0.00061751	540.7691249662819	20.024	0.57342	20.024	19.92	20.493	0					27	12	4	0	0	0	1.8411E-08	1	6133	6133		218.73	101.83	1	3172000		+	19479	11631;11552;11562;11715;8927	12334	12390	19772	19772					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7703247070312	2	540.769645	1079.52474	2.1395	0.001157	0.059014	3.1913E-05	2.1985	0.0011889	540.7697541736903	19.763	0.18736	19.763	19.673	19.86	0					7	4	2	0	0	0	0.14578	1	5421	5421		68.846	20.931	1	322870		+	19480	11631;11552;11562;11715;8927	12334	12390	19773	19773					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7713012695312	2	540.769645	1079.52474	1.0378	0.00056121	0.54268	0.00029347	1.5805	0.00085467	540.769859026145	19.785	0.1856	19.785	19.703	19.889	0					8	4	3	0	0	0	0.04067	1	5433	5433		98.582	24.607	1	159230		+	19481	11631;11552;11562;11715;8927	12334	12390	19774	19774					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7701416015625	2	540.769645	1079.52474	0.65646	0.00035499	0.21151	0.00011438	0.86796	0.00046937	540.769615198131	19.952	0.46893	19.952	19.842	20.311	0					20	9	4	0	0	0	0.0030642	1	6241	6241		168.26	75.063	1	2659500		+	19482	11631;11552;11562;11715;8927	12334	12390	19775	19775					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;TPM3|p.A243T|1|0.29|ENSG00000143549|chr1:154170448-154170448|C/T|missense_variant;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000198467|P07951-3|TPM2	ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7701416015625	2	540.769645	1079.52474	2.0808	0.0011252	-1.1296	-0.00061088	0.95119	0.00051437	540.7689012877024	19.936	0.51952	19.936	19.825	20.344	0					19	10	3	0	0	0	0.02953	1	6259	6259		109.48	38.183	1	1799600		+	19483	11631;11552;11562;11715;8927	12334	12390	19776	19776					-0.011843392873743142
KEAGTKALQ	9	Unmodified	_KEAGTKALQ_					0	0	0		SYNC|p.T364A|1|0.23|ENSG00000162520|chr1:32695008-32695008|T/C|missense_variant;nc|ENSG00000162520|Q9H7C4-2|SYNC;ENSG00000162520|ENST00000409190|SYNC	SYNC|p.T364A|1|0.23|ENSG00000162520|chr1:32695008-32695008|T/C|missense_variant	SYNC|p.T364A|1|0.23|ENSG00000162520|chr1:32695008-32695008|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.27178955078125	2	473.271824	944.529095	-0.31775	-0.00015038	-0.072707	-3.441E-05	-0.39045	-0.00018479	473.27167014929313	14.308	0.14425	14.308	14.224	14.368	0					11	6	2	0	0	0	0.35021	1	2927	2927		45.972	0	1	265340			19484	5467	12335	12391	19777	19777					0.054611699261727153
KEAIETIVAA	10	Unmodified	_KEAIETIVAA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.801025390625	2	522.800414	1043.58628	0.79138	0.00041373	-0.26645	-0.0001393	0.52493	0.00027443	522.8003207727264	35.097	0.19422	35.097	34.984	35.179	0					10	8	2	0	0	0	0.63224	1	11486	11486		30.318	4.7437	1	114940			19485	1768	12336	12392	19778	19778					0.06622592411895312
KEAIETIVAA	10	Unmodified	_KEAIETIVAA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8005981445312	2	522.800414	1043.58628	0.086752	4.5354E-05	0.018232	9.5319E-06	0.10498	5.4886E-05	522.8003351088854	35.38	0.2738	35.38	35.257	35.531	0					17	7	4	0	0	0	0.38179	1	13250	13250		58.246	13.224	1	662710			19486	1768	12336	12392	19779	19779					0.06622592411895312
KEAINEATIGM	11	Unmodified	_KEAINEATIGM_					0	0	0			REV__tr|U7SGB4|U7SGB4_FUSNUAcetyl-CoAC-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02245PE=3SV=1	REV__tr|U7SGB4|U7SGB4_FUSNUAcetyl-CoAC-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02245PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7994384765625	2	588.800088	1175.58562	1.4635	0.00086173	-0.7879	-0.00046392	0.67563	0.00039781	588.7994085615343	43.697	0.2868	43.697	43.593	43.88	0					40	15	3	0	0	0	0.64626	1	17056	17056		32.751	32.751	1	309830	+		19487	21690	12337	12393	19780	19780					0.004854297005294939
KEAIRIIKG	9	Unmodified	_KEAIRIIKG_					0	0	0		ENST00000254958.9_1_20:10654289-10654499:-|nuORF	ENST00000254958.9_1_20:10654289-10654499:-|nuORF	ENST00000254958.9_1_20:10654289-10654499:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.3348999023438	2	514.334759	1026.65496	0.12065	6.2054E-05	0.075403	3.8782E-05	0.19605	0.00010084	514.3348734652947	18.48	0.21849	18.48	18.37	18.589	0					8	4	2	0	0	0	0.25716	1	5549	5549		54.776	5.2403	1	561370			19488	8255	12338	12394	19781	19781					0.14270301502278926
KEAKKPQKK	9	Unmodified	_KEAKKPQKK_					0	0	0			REV__AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant	REV__AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.8460693359375	2	542.84549	1083.67643	1.1425	0.0006202	0.051793	2.8116E-05	1.1943	0.00064832	542.8456246119933	18.752	0.14771	18.752	18.678	18.826	0					7	4	2	0	0	0	0.10506	1	4723	4723		71.877	0	1	264260	+		19489	12101	12339	12395	19782	19782					0.1379368653099391
KEALHKCAPP	10	Unmodified	_KEALHKCAPP_					0	0	0			REV__ENST00000482459.1_1_11:1756512-1769373:-|nuORF	REV__ENST00000482459.1_1_11:1756512-1769373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2968139648438	2	547.294776	1092.575	3.8274	0.0020947	-0.65236	-0.00035703	3.1751	0.0017377	547.2947896995112	22.361	0.26724	22.361	22.254	22.521	0					11	5	4	0	0	0	0.51121	1	7442	7442		44.117	1.6423	1	608430	+		19490	17708	12340	12396	19783	19783					0.032414918367749124
KEALQGLKL	9	Unmodified	_KEALQGLKL_					0	0	0			REV__ENST00000394518.6_1_15:86288946-86289057:+|nuORF	REV__ENST00000394518.6_1_15:86288946-86289057:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.3133544921875	2	500.313492	998.612431	-2.1397	-0.0010705	1.4161	0.00070851	-0.72356	-0.00036201	500.31414171714306	35.042	0.21189	35.042	34.942	35.153	0					11	6	2	0	0	0	0.035062	1	12447	12447		104.06	5.4274	1	125900	+		19491	18865	12341	12397	19784	19784					0.11306906374034043
KEANRFVKL	9	Unmodified	_KEANRFVKL_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.830322265625	2	552.82984	1103.64513	1.5986	0.00088375	-0.83194	-0.00045992	0.76665	0.00042383	552.8293889816302	17.492	0.24963	17.492	17.351	17.6	0					12	5	4	0	0	0	0.085655	1	5219	5219		66.429	15.094	1	961130	+		19492	14146	12342	12398	19785	19785					0.09745113496887825
KEANRKKT	8	Unmodified	_KEANRKKT_					0	0	0			REV__nc|ENSG00000175395|P17030-2|ZNF25	REV__nc|ENSG00000175395|P17030-2|ZNF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7904357910156	2	487.790715	973.566878	0.8037	0.00039204	-1.2075	-0.00058903	-0.40384	-0.00019699	487.79001199562276	48.319	0.39295	48.319	48.167	48.56	0					38	20	2	0	0	0	0.79567	1	19283	19283		17.365	0.66	1	103710	+		19493	16609	12343	12399	19786	19786					0.0790368091164737
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.7633972167969	2	454.763635	907.512717	0.27761	0.00012625	-0.12206	-5.5507E-05	0.15556	7.0742E-05	454.7633484962993	16.64	0.18612	16.64	16.504	16.691	0					6	4	2	0	0	0	0.13907	1	4559	4559		70.399	10.105	1	84104			19494	7544	12344	12400	19787	19787					0.05526088760075254
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.7633361816406	2	454.763635	907.512717	0.72012	0.00032749	-1.0575	-0.00048093	-0.33741	-0.00015344	454.76297496196685	16.666	0.18201	16.666	16.492	16.674	0					10	4	3	0	0	0	0.032383	1	4556	4556		106.68	10.868	1	307090			19495	7544	12344	12400	19788	19788					0.05526088760075254
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.7633361816406	2	454.763635	907.512717	-0.13227	-6.0152E-05	-0.31036	-0.00014114	-0.44263	-0.00020129	454.76343764473506	16.588	0.21657	16.588	16.43	16.647	0					9	4	3	0	0	0	0.054723	1	4780	4780		93.598	7.7357	1	327140			19496	7544	12344	12400	19789	19789					0.05526088760075254
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.76336669921875	2	454.763635	907.512717	-0.4228	-0.00019227	-0.025081	-1.1406E-05	-0.44788	-0.00020368	454.7637111476393	16.608	0.21615	16.608	16.401	16.617	0					9	4	3	0	0	0	0.035106	1	4621	4621		104.01	15.837	1	326280			19497	7544	12344	12400	19790	19790					0.05526088760075254
KEAPSAGAAKD	11	Unmodified	_KEAPSAGAAKD_					0	0	0			REV__ENSG00000169918|ENST00000307050|OTUD7A	REV__ENSG00000169918|ENST00000307050|OTUD7A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7706909179688	2	522.769645	1043.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.961	1	12.961	12.461	13.461	0								0	0	0	0.39271	1	3044	3044		38.754	6.7987	1		+		19498	16343	12345	12401	19791	19791					0.004716607126283634
KEAQAVPATL	10	Unmodified	_KEAQAVPATL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2922973632812	2	514.292756	1026.57096	-0.48235	-0.00024807	1.1538	0.00059341	0.67148	0.00034534	514.2927755142274	28.443	0.11707	28.443	28.348	28.465	0					4	2	2	0	0	0	0.55031	1	10418	10418		35.152	0	1	70502			19499	6707	12346	12402	19792	19792					0.058737256147196604
KEAQRIMTL	9	Unmodified	_KEAQRIMTL_					0	0	0		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3087158203125	2	545.307884	1088.60121	1.8671	0.0010182	-1.2241	-0.00066752	0.64301	0.00035064	545.3075903758956	27.708	0.3529	27.708	27.542	27.895	0					21	8	4	0	0	0	0.13726	1	9704	9704		70.816	19.624	1	448380			19500	5391	12347	12403	19793	19793					0.060457610082494284
KEARDKIL	8	Unmodified	_KEARDKIL_					0	0	0		tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7947082519531	2	486.795466	971.57638	-0.084989	-4.1372E-05	-1.4387	-0.00070036	-1.5237	-0.00074173	486.7947816379939	26.637	0.26754	26.637	26.426	26.694	0					10	5	3	0	0	0	0.6088	1	9571	9571		47.657	3.5405	1	105310			19501	22572	12348	12404	19794	19794					0.08945449197187827
KEARKVSR	8	Unmodified	_KEARKVSR_					0	0	0		GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant;ENSG00000141404|ENST00000334049|GNAL	GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant	GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2998962402344	2	487.298707	972.582862	2.554	0.0012446	-0.14024	-6.8339E-05	2.4138	0.0011762	487.29858724419836	27.686	0.26895	27.686	27.577	27.846	0					16	5	4	0	0	0	0.30437	1	9927	9927		82.305	0	1	1389300			19502	4442	12349	12405	19795	19795					0.09547387148563757
KEASTTVRV	9	Unmodified	_KEASTTVRV_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.78277587890625	2	495.782556	989.550559	0.73479	0.0003643	-0.75361	-0.00037363	-0.018813	-9.3273E-06	495.78207023502057	18.686	0.21564	18.686	18.6	18.816	0					8	5	2	0	0	0	0.047855	1	5521	5521		96.034	25.217	1	577150			19503	2223	12350	12406	19796	19796					0.05536554954892381
KEASTTVRV	9	Unmodified	_KEASTTVRV_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7820739746094	2	495.782556	989.550559	-0.037132	-1.841E-05	-0.62862	-0.00031166	-0.66576	-0.00033007	495.7820619853259	18.619	0.11662	18.619	18.561	18.677	0					6	2	3	0	0	0	0.022525	1	5755	5755		117.81	35.061	1	545280			19504	2223	12350	12406	19797	19797					0.05536554954892381
KEASTTVRV	9	Unmodified	_KEASTTVRV_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.78240966796875	2	495.782556	989.550559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.475	1	18.475	17.975	18.975	0								0	0	0	0.34101	1	4829	4829		27.047	0	1				19505	2223	12350	12406	19798	19798					0.05536554954892381
KEASTTVRV	9	Unmodified	_KEASTTVRV_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.782470703125	2	495.782556	989.550559	-0.66897	-0.00033166	-2.2224	-0.0011018	-2.8914	-0.0014335	495.78130203035704	18.629	0.3151	18.629	18.37	18.685	0					12	6	2	0	0	0	0.18416	1	5623	5623		63.534	10.182	1	874970			19506	2223	12350	12406	19799	19799					0.05536554954892381
KEATPRKK	8	Unmodified	_KEATPRKK_					0	0	0			REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant;REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2954406738281	2	479.295633	956.576714	-0.23215	-0.00011127	-0.21793	-0.00010445	-0.45009	-0.00021572	479.2955652445095	22.801	0.29356	22.801	22.714	23.007	0					15	7	3	0	0	0	0.28444	1	7449	7449		87.696	0	1	1977300	+		19507	16238;12911	12351	12407	19800	19800					0.0966886891702643
KEAVIKHSL	9	Unmodified	_KEAVIKHSL_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.81103515625	2	512.811116	1023.60768	0.0087584	4.4914E-06	0.11462	5.8776E-05	0.12337	6.3268E-05	512.8111055230538	19.08	0.13071	19.08	18.993	19.124	0					6	3	2	0	0	0	0.056004	1	5702	5702		93.143	15.826	1	320480			19508	1644	12352	12408	19801	19801					0.09682022231265819
KEAVILYAQ	9	Unmodified	_KEAVILYAQ_					0	0	0		nc|ENSG00000133466|Q9BXI9-3|C1QTNF6;ENST00000470655.5_1_22:37578230-37578845:-|nuORF;nc|ENSG00000133466|Q9BXI9-1|C1QTNF6;ENST00000493023.1_1_22:37578230-37581504:-|nuORF;ENSG00000133466|ENST00000337843|C1QTNF6	nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.79931640625	2	517.797675	1033.5808	1.3136	0.00068019	1.9231	0.00099577	3.2367	0.001676	517.7987846564622	29.657	0.29951	29.657	29.485	29.784	0					11	7	3	0	0	0	0.3269	1	10626	10626		40.778	9.2484	1	236230			19509	3858	12353	12409	19802	19802					0.06534913620089355
KEDAGWYTV	9	Unmodified	_KEDAGWYTV_					0	0	0		nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93-7|PALLD	nc|ENSG00000129116|Q8WX93-7|PALLD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7540893554688	2	534.753464	1067.49238	1.7889	0.00095663	0.7766	0.00041529	2.5655	0.0013719	534.7535600176959	38.057	0.27036	38.057	37.985	38.255	0					19	9	3	0	0	0	0.35021	1	14904	14904		45.972	6.7194	1	143380			19510	3579	12354	12410	19803	19803					-0.038671266903975265
KEDATKGKFAF	11	Unmodified	_KEDATKGKFAF_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.5555114746094	3	414.555672	1240.64519	-0.16434	-6.8127E-05	0.40443	0.00016766	0.24009	9.9532E-05	414.55576722593867	25.188	0.15471	25.188	25.11	25.265	0					11	4	3	0	0	0	0.54316	1	7533	7533		41.08	16.848	1	143880			19511	6229	12355	12411	19804	19804					0.03449068706231628
KEDATKGKFAF	11	Unmodified	_KEDATKGKFAF_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.5556335449219	3	414.555672	1240.64519	-0.75533	-0.00031313	0.67111	0.00027821	-0.084224	-3.4916E-05	414.5559624886146	25.45	0.72202	25.45	25.32	26.042	0					34	15	4	0	0	0	0.6208	1	8684	8684		35.178	2.1388	1	1179800			19512	6229	12355	12411	19805	19805					0.03449068706231628
KEDDPKAAL	9	Unmodified	_KEDDPKAAL_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2;ENST00000558545.1_1_15:49431640-49447775:-|nuORF;COPS2|p.H176Tfs*7|1|0.14|ENSG00000166200|chr15:49137164-49137165|-/T|frameshift_variant;COPS2|p.G191Rfs*21|1|0.11|ENSG00000166200|chr15:49134484-49134485|-/T|frameshift_variant;COPS2|p.F259Lfs*19|1|0.29|ENSG00000166200|chr15:49134047-49134047|A/-|frameshift_variant	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.760986328125	2	493.761289	985.508025	0.51164	0.00025263	-0.19006	-9.3843E-05	0.32158	0.00015879	493.7609357139582	20.419	0.20494	20.419	20.305	20.51	0					9	4	3	0	0	0	0.01873	1	6337	6337		124.08	38.919	1	125120			19513	5872	12356	12412	19806	19806					0.014691598266608707
KEDDPKAAL	9	Unmodified	_KEDDPKAAL_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2;ENST00000558545.1_1_15:49431640-49447775:-|nuORF;COPS2|p.H176Tfs*7|1|0.14|ENSG00000166200|chr15:49137164-49137165|-/T|frameshift_variant;COPS2|p.G191Rfs*21|1|0.11|ENSG00000166200|chr15:49134484-49134485|-/T|frameshift_variant;COPS2|p.F259Lfs*19|1|0.29|ENSG00000166200|chr15:49134047-49134047|A/-|frameshift_variant	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7608642578125	2	493.761289	985.508025	-0.048496	-2.3945E-05	-0.83669	-0.00041313	-0.88519	-0.00043707	493.76097651700655	20.342	0.31714	20.342	20.178	20.495	0					15	6	4	0	0	0	0.0097668	1	6565	6565		141.52	39.92	1	559460			19514	5872	12356	12412	19807	19807					0.014691598266608707
KEDEKKQEL	9	Unmodified	_KEDEKKQEL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.8043212890625	2	573.803685	1145.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.907	1	13.907	13.407	14.407	0								0	0	0	0.20989	1	2790	2790		49.536	1.8787	1				19515	4274	12357	12413	19808	19808					0.025844855726290916
KEDEKKQEL	9	Unmodified	_KEDEKKQEL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8038940429688	2	573.803685	1145.59282	-0.11865	-6.8083E-05	0.58743	0.00033707	0.46878	0.00026899	573.8037291346509	14.205	0.25335	14.205	14.046	14.3	0					10	6	3	0	0	0	0.029571	1	3424	3424		109.44	21.262	1	324090			19516	4274	12357	12413	19809	19809					0.025844855726290916
KEDEKKQEL	9	Unmodified	_KEDEKKQEL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.8038940429688	2	573.803685	1145.59282	1.9811	0.0011367	-0.93342	-0.0005356	1.0476	0.00060114	573.8029113829951	14.124	0.50331	14.124	13.873	14.376	0					20	10	3	0	0	0	9.1592E-14	1	3604	3604		237.92	38.22	1	2203500			19517	4274	12357	12413	19810	19810					0.025844855726290916
KEDEKKQEL	9	Unmodified	_KEDEKKQEL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.8050537109375	2	573.803685	1145.59282	0.60857	0.0003492	1.8597	0.0010671	2.4682	0.0014163	573.8047600044728	13.956	0.079565	13.956	13.918	13.997	0					7	3	3	0	0	0	0.0088974	1	2882	2882		143.37	31.266	1	106470			19518	4274	12357	12413	19811	19811					0.025844855726290916
KEDEKKQEL	9	Unmodified	_KEDEKKQEL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.80419921875	2	573.803685	1145.59282	-1.484	-0.00085151	3.0876	0.0017717	1.6036	0.00092015	573.8055194759751	13.969	0.20493	13.969	13.847	14.052	0					10	8	2	0	0	0	0.0037134	1	2874	2874		164.46	46.644	1	151030			19519	4274	12357	12413	19812	19812					0.025844855726290916
KEDEKKQEL	9	Unmodified	_KEDEKKQEL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8036499023438	2	573.803685	1145.59282	1.6658	0.00095587	-0.75082	-0.00043083	0.91502	0.00052504	573.8029852412743	14.146	0.51026	14.146	13.848	14.358	0					24	10	4	0	0	0	0.0043467	1	3444	3444		160.82	29.206	1	1818100			19520	4274	12357	12413	19813	19813					0.025844855726290916
KEDEKKQEL	9	Unmodified	_KEDEKKQEL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.803955078125	2	573.803685	1145.59282	3.3513	0.001923	-2.3914	-0.0013722	0.95992	0.00055081	573.8018845398085	14.177	0.51069	14.177	13.88	14.391	0					25	10	5	0	0	0	0.41113	1	3436	3436		40.778	0	1	1078200			19521	4274	12357	12413	19814	19814					0.025844855726290916
KEDFGFIKK	9	Unmodified	_KEDFGFIKK_					0	0	0			REV__tr|U7SQS1|U7SQS1_FUSNUDiaminopropionateammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01557PE=4SV=1	REV__tr|U7SQS1|U7SQS1_FUSNUDiaminopropionateammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01557PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3148803710938	2	556.310949	1110.60735	3.5288	0.0019631	3.8616	0.0021482	7.3904	0.0041114	556.3130324545772	16.372	0.31541	16.372	16.217	16.532	0					20	6	5	0	0	0	0.02953	1	4531	4531		82.241	0	1	1816900	+		19522	21841	12358	12414	19815	19815					0.0564660251143323
KEDGAISTIVL	11	Unmodified	_KEDGAISTIVL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.3245239257812	2	573.324254	1144.63395	3.3627	0.0019279	-3.0343	-0.0017396	0.32841	0.00018829	573.3227247992955	42.836	0.16611	42.836	42.762	42.928	0					9	5	2	0	0	0	0.45905	1	17122	17122		47.228	0.7709	1	141760			19523	5164	12359	12415	19816	19816					0.0674224661208882
KEDGARRR	8	Unmodified	_KEDGARRR_					0	0	0			REV__ENST00000426882.5_1_6:30294481-30294724:-|nuORF	REV__ENST00000426882.5_1_6:30294481-30294724:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2755432128906	2	494.275764	986.536974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.065	1	17.065	16.565	17.565	0								0	0	0	1.7419	1	3998	3998		35.618	2.8059	1		+		19524	19123	12360	12416	19817	19817					0.043167419663291184
KEDITQEFPG	10	Unmodified	_KEDITQEFPG_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.282958984375	2	582.282586	1162.55062	1.3152	0.0007658	-1.0196	-0.0005937	0.29556	0.0001721	582.2820559810671	28.371	0.28438	28.371	28.291	28.575	0					19	7	3	0	0	0	0.033694	1	10029	10029		115.49	14.241	1	778380			19525	2620	12361	12417	19818	19818					-0.024154898357664933
KEDLFIRDG	9	Unmodified	_KEDLFIRDG_					0	0	0			REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7885131835938	2	546.787838	1091.56112	1.8549	0.0010143	-1.5794	-0.00086359	0.27555	0.00015067	546.787021036073	32.449	0.50486	32.449	32.225	32.73	0					22	12	3	0	0	0	0.14578	1	12303	12303		71.877	17.101	1	615570	+		19526	21731	12362	12418	19819	19819					0.01900537609321873
KEDLFIRDG	9	Unmodified	_KEDLFIRDG_					0	0	0			REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7886352539062	2	546.787838	1091.56112	1.9081	0.0010433	-0.68366	-0.00037381	1.2245	0.00066953	546.7873605843964	32.394	0.56817	32.394	32.203	32.771	0					21	11	3	0	0	0	0.070005	1	12203	12203		82.241	0	1	693080	+		19527	21731	12362	12418	19820	19820					0.01900537609321873
KEDLQLWC	8	Unmodified	_KEDLQLWC_					0	0	0		ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.750732421875	2	517.75241	1033.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.165	1	11.165	10.665	11.665	0								0	0	0	1.7419	1	2134	2134		12.207	0.69583	1				19528	6398	12363	12419	19821	19821					-0.025138786998240903
KEDLRVLM	8	Unmodified	_KEDLRVLM_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2833251953125	2	502.283877	1002.5532	0.051961	2.6099E-05	-0.53348	-0.00026796	-0.48151	-0.00024186	502.2835796411813	33.537	0.23195	33.537	33.402	33.634	0					8	5	2	0	0	0	0.63077	1	12855	12855		44.117	5.3107	1	119560			19529	7494	12364	12420	19822	19822					0.052026870882059484
KEDLRVLM	8	Unmodified	_KEDLRVLM_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2837219238281	2	502.283877	1002.5532	-0.52427	-0.00026333	0.36179	0.00018172	-0.16248	-8.1611E-05	502.28407813344205	33.505	0.31647	33.505	33.3	33.616	0					11	6	3	0	0	0	0.66095	1	12756	12756		39.253	5.0803	1	295020			19530	7494	12364	12420	19823	19823					0.052026870882059484
KEDNKEKL	8	Unmodified	_KEDNKEKL_					0	0	0			REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2742004394531	2	502.274564	1002.53457	-0.043985	-2.2093E-05	-0.012803	-6.4308E-06	-0.056789	-2.8524E-05	502.27443500081085	16.717	0.094517	16.717	16.656	16.75	0					6	3	2	0	0	0	0.50061	1	3850	3850		58.782	0	1	148290	+		19531	22212	12365	12421	19824	19824					0.033408487179940494
KEDPKALAV	9	Unmodified	_KEDPKALAV_					0	0	0		ENSG00000160049|ENST00000377038|DFFA	ENSG00000160049|ENST00000377038|DFFA	ENSG00000160049|ENST00000377038|DFFA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7819519042969	2	485.782025	969.549496	-0.5608	-0.00027243	0.31534	0.00015319	-0.24546	-0.00011924	485.78213560565746	23.035	0.21089	23.035	22.939	23.15	0					9	4	3	0	0	0	0.16806	1	7745	7745		65.465	12.114	1	255960			19532	5336	12366	12422	19825	19825					0.0635034058598194
KEDRDSVK	8	Unmodified	_KEDRDSVK_					0	0	0		ZNF671|p.G225D|1|0.18|ENSG00000083814|chr19:57721412-57721412|C/T|missense_variant	ZNF671|p.G225D|1|0.18|ENSG00000083814|chr19:57721412-57721412|C/T|missense_variant	ZNF671|p.G225D|1|0.18|ENSG00000083814|chr19:57721412-57721412|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.75628662109375	2	488.756538	975.498523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.537	1	13.537	13.037	14.037	0								0	0	0	1.7419	1	3103	3103		101.25	16.337	1				19533	23171	12367	12423	19826	19826					0.009793915411478338
KEDREKEQL	9	Unmodified	_KEDREKEQL_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.8069458007812	2	587.806759	1173.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.366	1	15.366	14.866	15.866	0								0	0	0	0.20646	1	3489	3489		50.034	7.1692	1				19534	6735	12368	12424	19827	19827					0.01911003804139
KEDREKEQL	9	Unmodified	_KEDREKEQL_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.8071899414062	2	587.806759	1173.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.388	1	15.388	14.888	15.888	0								0	0	0	0.28191	1	3441	3441		38.754	3.6016	1				19535	6735	12368	12424	19828	19828					0.01911003804139
KEDREKEQL	9	Unmodified	_KEDREKEQL_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.807373046875	2	587.806759	1173.59897	1.4048	0.00082572	-0.72819	-0.00042803	0.67657	0.00039769	587.8065955844833	15.588	0.16647	15.588	15.481	15.647	0					7	3	3	0	0	0	0.095583	1	4157	4157		80.455	7.5754	1	421740			19536	6735	12368	12424	19829	19829					0.01911003804139
KEDSKKTK	8	Unmodified	_KEDSKKTK_					0	0	0		TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant;TRDN|p.V538Cfs*8|1|0.28|ENSG00000186439|chr6:123273350-123273350|T/-|frameshift_variant;TRDN|p.T573Nfs*11|1|0.39|ENSG00000186439|chr6:123271141-123271142|-/T|frameshift_variant;TRDN|p.E606Sfs*14|1|0.05|ENSG00000186439|chr6:123260627-123260628|-/CCAAAAGGCT|frameshift_variant;ENSG00000186439|ENST00000334268|TRDN;TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant	TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant	TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2769775390625	2	482.277106	962.53966	0.69156	0.00033353	-1.3161	-0.00063473	-0.62455	-0.00030121	482.27659299662207	11.509	0.34464	11.509	11.427	11.771	0					15	9	2	0	0	0	0.66095	1	2473	2473		39.253	1.4413	1	170240			19537	7137	12369	12425	19830	19830					0.05689152580623613
KEDSKLIAL	9	Unmodified	_KEDSKLIAL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8028869628906	2	508.802957	1015.59136	0.20285	0.00010321	-0.31526	-0.0001604	-0.11241	-5.7192E-05	508.8028697039266	31.193	0.36131	31.193	31.093	31.454	0					19	8	4	0	0	0	0.076532	1	11730	11730		85.862	23.754	1	837510			19538	1841	12370	12426	19831	19831					0.08418896274520193
KEDSKLIAL	9	Unmodified	_KEDSKLIAL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.8037414550781	2	508.802957	1015.59136	0.54698	0.00027831	0.21361	0.00010868	0.76059	0.00038699	508.8030286072818	30.966	0.17939	30.966	30.915	31.095	0					6	4	2	0	0	0	0.11898	1	10618	10618		75.043	16.813	1	84559			19539	1841	12370	12426	19832	19832					0.08418896274520193
KEDSKLIAL	9	Unmodified	_KEDSKLIAL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.80291748046875	2	508.802957	1015.59136	-0.067863	-3.4529E-05	0.49436	0.00025153	0.4265	0.00021701	508.8031349972474	31.182	0.30979	31.182	31.076	31.386	0					15	6	4	0	0	0	0.032383	1	11617	11617		106.68	31.64	1	1087200			19540	1841	12370	12426	19833	19833					0.08418896274520193
KEDSNSLTL	9	Unmodified	_KEDSNSLTL_					0	0	0		nc|ENSG00000136933|Q7Z6M1-2|RABEPK;ENSG00000136933|ENST00000373538|RABEPK	nc|ENSG00000136933|Q7Z6M1-2|RABEPK	nc|ENSG00000136933|Q7Z6M1-2|RABEPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7560119628906	2	503.756204	1005.49785	-0.059756	-3.0103E-05	-0.92698	-0.00046697	-0.98674	-0.00049707	503.75605915002035	30.052	0.36099	30.052	29.884	30.245	0					21	9	3	0	0	0	0.24334	1	10801	10801		56.434	3.4971	1	486900			19541	4129	12371	12427	19834	19834					-0.004674478985634778
KEEAVKLA	8	Unmodified	_KEEAVKLA_					0	0	0			REV__tr|U7SXX3|U7SXX3_FUSNUUridinephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00947PE=3SV=1	REV__tr|U7SXX3|U7SXX3_FUSNUUridinephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00947PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2635498046875	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.538	1	17.538	17.038	18.038	0								0	0	0	1.7419	1	5226	5226		31.955	1.4512	1		+		19542	22022	12372	12428	19835	19835					0.0645866904022796
KEECVIHTV	9	Unmodified	_KEECVIHTV_					0	0	0			REV__nc|ENSG00000198022|A6NJ88|SAGE2P	REV__nc|ENSG00000198022|A6NJ88|SAGE2P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2708740234375	2	529.270967	1056.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.71	1	26.71	26.21	27.21	0								0	0	0	0.035155	1	9592	9592		93.195	0	1		+		19543	21184	12373	12429	19836	19836					0.0013779284590782481
KEEDILDL	8	Unmodified	_KEEDILDL_					0	0	0		TTLL7|p.T522Lfs*19|1|0.33|ENSG00000137941|chr1:83917627-83917627|T/-|frameshift_variant;nc|ENSG00000137941|Q6ZT98-2|TTLL7;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7;ENST00000488014.5_1_1:84352960-84383379:-|nuORF	TTLL7|p.T522Lfs*19|1|0.33|ENSG00000137941|chr1:83917627-83917627|T/-|frameshift_variant	TTLL7|p.T522Lfs*19|1|0.33|ENSG00000137941|chr1:83917627-83917627|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.75750732421875	2	487.755672	973.496792	3.5057	0.0017099	0.42415	0.00020688	3.9298	0.0019168	487.7558889998253	18.066	0.20278	18.066	17.965	18.168	0					15	6	3	0	0	0	0.66372	1	4657	4657		38.806	1.647	1	100410			19544	4209	12374	12430	19837	19837					0.008983377325421316
KEEEETRFV	9	Unmodified	_KEEEETRFV_					0	0	0			REV__ENST00000563635.5_1_13:76123956-76287321:+|nuORF	REV__ENST00000563635.5_1_13:76123956-76287321:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.787841796875	2	583.788035	1165.56152	-1.7169	-0.0010023	2.4347	0.0014213	0.71773	0.000419	583.7894383131113	32.151	0.21256	32.151	32.064	32.277	0					14	6	3	0	0	0	0.43488	1	11136	11136		31.53	0	1	115340	+		19545	14228	12375	12431	19838	19838					-0.014640874614769928
KEEEKAKLE	9	Unmodified	_KEEEKAKLE_					0	0	0			REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.301025390625	2	552.300778	1102.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.329	1	25.329	24.829	25.829	0								0	0	0	0.11736	1	8976	8976		67.494	2.0283	1		+		19546	16158	12376	12432	19839	19839					0.03981387060935049
KEEELQAAL	9	Unmodified	_KEEELQAAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7745971679688	2	515.774396	1029.53424	-0.50772	-0.00026187	0.75134	0.00038752	0.24362	0.00012565	515.7747520197296	32.636	0.45123	32.636	32.511	32.962	0					26	11	3	0	0	0	0.15558	1	12406	12406		66.962	14.025	1	1714500			19547	2007;2348;3852	12377	12433	19840	19840					0.02065428998139396
KEEELVELLAR	11	Unmodified	_KEEELVELLAR_					0	0	0		nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF;nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6|MYO7B	nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.58575439453125	3	443.58552	1327.73473	0.58392	0.00025902	-0.18235	-8.0887E-05	0.40157	0.00017813	443.5854891880444	16.367	0.55483	16.367	16.275	16.83	0					31	13	4	0	0	0	0.7767	1	4430	4430		13.73	13.73	1	7066500			19548	6203	12378	12434	19841	19841					0.08397278594952695
KEEETEIPL	9	Unmodified	_KEEETEIPL_					0	0	0			REV__ENST00000266085.6_1_22:33257141-33257363:+|nuORF	REV__ENST00000266085.6_1_22:33257141-33257363:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.28076171875	2	544.279512	1086.54447	0.44634	0.00024293	2.1014	0.0011437	2.5477	0.0013867	544.2805522868175	22.607	0.22457	22.607	22.505	22.729	0					12	7	3	0	0	0	0.27249	1	6686	6686		37.159	1.5408	1	109150	+		19549	18082	12379	12435	19842	19842					0.004659919327195894
KEEETEIPL	9	Unmodified	_KEEETEIPL_					0	0	0			REV__ENST00000266085.6_1_22:33257141-33257363:+|nuORF	REV__ENST00000266085.6_1_22:33257141-33257363:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2805786132812	2	544.279512	1086.54447	1.9794	0.0010773	0.028813	1.5682E-05	2.0082	0.001093	544.2794908804607	33.642	0.16666	33.642	33.533	33.7	0					11	3	4	0	0	0	0.037712	1	12817	12817		95.815	29.386	1	1598700	+		19550	18082	12379	12435	19843	19843					0.004659919327195894
KEEEVKKNQ	9	Unmodified	_KEEEVKKNQ_					0	0	0			REV__GIGYF2|p.E1119K|1|0.19|ENSG00000204120|chr2:232845781-232845781|G/A|missense_variant	REV__GIGYF2|p.E1119K|1|0.19|ENSG00000204120|chr2:232845781-232845781|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3038940429688	2	566.303852	1130.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.361	1	15.361	14.861	15.861	0								0	0	0	0.12601	1	3950	3950		65.465	9.0316	1		+		19551	20690	12380	12436	19844	19844					0.033079052924676944
KEEFVEEIK	9	Unmodified	_KEEFVEEIK_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.8034057617188	2	575.803154	1149.59175	0.96874	0.0005578	0.27046	0.00015573	1.2392	0.00071353	575.8032360356385	35.069	0.10802	35.069	35.011	35.119	0					7	4	2	0	0	0	0.16806	1	11495	11495		65.465	5.5346	1	50771			19552	1077	12381	12437	19845	19845					0.02294271203709286
KEEHEVAVL	9	Unmodified	_KEEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.28271484375	2	527.282389	1052.55022	0.57569	0.00030355	0.11624	6.1294E-05	0.69193	0.00036484	527.282375715618	24.55	0.29481	24.55	24.424	24.719	0					19	8	3	0	0	0	0.17854	1	7246	7246		64.207	20.09	1	542620			19553	4482	12382	12438	19846	19846					0.026051352350577872
KEEHEVAVL	9	Unmodified	_KEEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2824096679688	2	527.282389	1052.55022	0.10419	5.4936E-05	0.37268	0.00019651	0.47687	0.00025144	527.2824918702996	24.861	0.46924	24.861	24.726	25.195	0					28	11	4	0	0	0	0.1424	1	8411	8411		69.628	26.763	1	4882600			19554	4482	12382	12438	19847	19847					0.026051352350577872
KEEHEVAVL	9	Unmodified	_KEEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2827758789062	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.823	1	24.823	24.323	25.323	0								0	0	0	0.25587	1	8733	8733		42.864	3.6114	1				19555	4482	12382	12438	19848	19848					0.026051352350577872
KEEHEVAVL	9	Unmodified	_KEEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2824096679688	2	527.282389	1052.55022	0.2845	0.00015001	-0.091536	-4.8265E-05	0.19296	0.00010175	527.28226139501	24.834	0.31091	24.834	24.729	25.04	0					12	6	3	0	0	0	0.19605	1	8725	8725		62.107	12.666	1	752670			19556	4482	12382	12438	19849	19849					0.026051352350577872
KEEIIKTL	8	Unmodified	_KEEIIKTL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000423330.1_1_9:133527641-133527767:+|nuORF;ENST00000433839.1_1_10:122892628-122892781:-|nuORF;ENST00000577759.1_1_17:37360679-37360898:+|nuORF;ENST00000424919.1_1_X:150162237-150162561:+|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2996826171875	2	487.30005	972.585547	-0.33995	-0.00016566	-0.13227	-6.4456E-05	-0.47222	-0.00023011	487.2999777632123	27.744	0.31394	27.744	27.61	27.924	0					16	7	4	0	0	0	0.24681	1	9716	9716		107.01	5.4068	1	1846600			19557	2522	12383	12439	19850	19850					0.09815797762871625
KEEIIKTL	8	Unmodified	_KEEIIKTL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000423330.1_1_9:133527641-133527767:+|nuORF;ENST00000433839.1_1_10:122892628-122892781:-|nuORF;ENST00000577759.1_1_17:37360679-37360898:+|nuORF;ENST00000424919.1_1_X:150162237-150162561:+|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2998962402344	2	487.30005	972.585547	-0.96722	-0.00047133	0.73162	0.00035652	-0.2356	-0.00011481	487.30029577211366	27.493	0.18319	27.493	27.402	27.585	0					13	6	3	0	0	0	0.61925	1	8748	8748		45.972	0	1	186400			19558	2522	12383	12439	19851	19851					0.09815797762871625
KEEIIKTL	8	Unmodified	_KEEIIKTL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000423330.1_1_9:133527641-133527767:+|nuORF;ENST00000433839.1_1_10:122892628-122892781:-|nuORF;ENST00000577759.1_1_17:37360679-37360898:+|nuORF;ENST00000424919.1_1_X:150162237-150162561:+|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2997131347656	2	487.30005	972.585547	0.63174	0.00030785	-0.96328	-0.00046941	-0.33154	-0.00016156	487.2995089161415	27.704	0.26183	27.704	27.601	27.863	0					11	5	3	0	0	0	0.23768	1	10081	10081		117.81	5.4001	1	663750			19559	2522	12383	12439	19852	19852					0.09815797762871625
KEEIIKTL	8	Unmodified	_KEEIIKTL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000423330.1_1_9:133527641-133527767:+|nuORF;ENST00000433839.1_1_10:122892628-122892781:-|nuORF;ENST00000577759.1_1_17:37360679-37360898:+|nuORF;ENST00000424919.1_1_X:150162237-150162561:+|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2999572753906	2	487.30005	972.585547	-0.70108	-0.00034163	0.34384	0.00016755	-0.35723	-0.00017408	487.30018956779094	27.739	0.31139	27.739	27.586	27.897	0					13	6	3	0	0	0	0.27242	1	10071	10071		143.89	18.073	1	888460			19560	2522	12383	12439	19853	19853					0.09815797762871625
KEEIVHQL	8	Unmodified	_KEEIVHQL_					0	0	0		nc|ENSG00000085231|Q9Y3D8-2|AK6;ENSG00000085231|ENST00000380822|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.27960205078125	2	498.279649	994.544745	0.69165	0.00034463	-0.69448	-0.00034604	-0.0028333	-1.4118E-06	498.27914978303306	24.454	0.57985	24.454	24.09	24.67	0					21	13	3	0	0	0	0.24751	1	8227	8227		147.69	23.099	1	945090			19561	1723	12384	12440	19854	19854					0.04725456443236453
KEEIVHQL	8	Unmodified	_KEEIVHQL_					0	0	0		nc|ENSG00000085231|Q9Y3D8-2|AK6;ENSG00000085231|ENST00000380822|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.279541015625	2	498.279649	994.544745	-0.023305	-1.1613E-05	-0.28331	-0.00014117	-0.30661	-0.00015278	498.27945349388455	24.419	0.26595	24.419	24.262	24.528	0					9	5	2	0	0	0	0.24328	1	8533	8533		113.41	8.665	1	464420			19562	1723	12384	12440	19855	19855					0.04725456443236453
KEEIVHQL	8	Unmodified	_KEEIVHQL_					0	0	0		nc|ENSG00000085231|Q9Y3D8-2|AK6;ENSG00000085231|ENST00000380822|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2795104980469	2	498.279649	994.544745	-0.22926	-0.00011424	0.53188	0.00026502	0.30262	0.00015079	498.2797281447996	24.216	0.11241	24.216	24.138	24.251	0					4	2	2	0	0	0	0.24622	1	7519	7519		108.09	14.892	1	52696			19563	1723	12384	12440	19856	19856					0.04725456443236453
KEEIVHQL	8	Unmodified	_KEEIVHQL_					0	0	0		nc|ENSG00000085231|Q9Y3D8-2|AK6;ENSG00000085231|ENST00000380822|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.27960205078125	2	498.279649	994.544745	-0.72777	-0.00036263	0.70094	0.00034926	-0.02683	-1.3369E-05	498.28002218574824	24.388	0.36784	24.388	24.179	24.547	0					11	7	2	0	0	0	0.23367	1	8394	8394		120.62	3.7174	1	611110			19564	1723	12384	12440	19857	19857					0.04725456443236453
KEEIVHQL	8	Unmodified	_KEEIVHQL_					0	0	0		nc|ENSG00000085231|Q9Y3D8-2|AK6;ENSG00000085231|ENST00000380822|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	nc|ENSG00000085231|Q9Y3D8-2|AK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2795104980469	2	498.279649	994.544745	1.0287	0.00051257	-2.5501	-0.0012707	-1.5214	-0.00075809	498.27801576139876	24.372	0.46354	24.372	24.213	24.676	0					16	9	3	0	0	0	0.25873	1	8411	8411		96.19	8.4361	1	891630			19565	1723	12384	12440	19858	19858					0.04725456443236453
KEEKGRQEL	9	Unmodified	_KEEKGRQEL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8076171875	2	558.80402	1115.59349	1.8254	0.00102	3.6101	0.0020173	5.4355	0.0030374	558.8063625971953	14.35	0.16671	14.35	14.29	14.457	0					5	3	2	0	0	0	0.085655	1	3562	3562		82.75	0.44546	1	227710			19566	2348	12385	12441	19859	19859					0.04031325012351772
KEEKKLKEVM	10	Unmodified	_KEEKKLKEVM_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;SMC4|p.D465Efs*32|1|0.12|ENSG00000113810|chr3:160416372-160416373|-/GCATACATCTT|frameshift_variant;ENST00000493695.1_1_3:160132272-160134257:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.3619995117188	2	631.362856	1260.71116	-0.73071	-0.00046134	-1.04	-0.00065663	-1.7707	-0.001118	631.3620181368917	16.275	0.77142	16.275	16.13	16.901	0					47	28	3	0	0	0	0.46215	1	3844	3844		49.442	3.4693	1	211540			19567	2826	12386	12442	19860	19860					0.09123141556756309
KEEKLEPYH	9	Unmodified	_KEEKLEPYH_					0	0	0			REV__nc|ENSG00000123472|Q5TC12-2|ATPAF1	REV__nc|ENSG00000123472|Q5TC12-2|ATPAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.798828125	2	586.800946	1171.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.928	1	28.928	28.428	29.428	0								0	0	0	0.30504	1	9374	9374		34.173	2.6427	1		+		19568	14362	12387	12443	19861	19861					0.008408067807977204
KEEKLQLQP	9	Unmodified	_KEEKLQLQP_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2;nc|ENSG00000119471|Q6YN16-2|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.8190307617188	2	556.819138	1111.62372	0.11683	6.5054E-05	1.3479	0.00075054	1.4647	0.00081559	556.8197735999498	37.605	0.32538	37.605	37.439	37.764	0					27	17	2	0	0	0	0.4966	1	12679	12679		32.812	2.4947	1	45821			19569	3117	12388	12444	19862	19862					0.07237683677522
KEEKVLHE	8	Unmodified	_KEEKVLHE_					0	0	0		ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3	ENSG00000122025|ENST00000241453|FLT3	ENSG00000122025|ENST00000241453|FLT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.2771301269531	2	506.277106	1010.53966	-0.713	-0.00036097	1.9453	0.00098486	1.2323	0.00062389	506.2780863013368	39.408	0.25488	39.408	39.345	39.6	0					20	14	2	0	0	0	0.65148	1	13243	13243		40.778	5.6261	1	146400			19570	3247	12389	12445	19863	19863					0.03481152580627622
KEELGSEVY	9	Unmodified	_KEELGSEVY_					0	0	0			REV__tr|U7STE1|U7STE1_FUSNUDUF4304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01378PE=4SV=1	REV__tr|U7STE1|U7STE1_FUSNUDUF4304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01378PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.26123046875	2	527.258579	1052.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.11	1	12.11	11.61	12.61	0								0	0	0	0.3304	1	2502	2502		29.15	2.4566	1		+		19571	21911	12390	12446	19864	19864					-0.021545637557892405
KEELLKLT	8	Unmodified	_KEELLKLT_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.3002014160156	2	487.30005	972.585547	-0.0033458	-1.6304E-06	-0.52279	-0.00025476	-0.52614	-0.00025639	487.2998025614182	27.462	0.16718	27.462	27.366	27.533	0					13	5	3	0	0	0	0.24999	1	8454	8454		101.25	0	1	376270			19572	2620	12391	12447	19865	19865					0.09815797762848888
KEELMERLK	9	Unmodified	_KEELMERLK_					0	0	0		ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;nc|ENSG00000137710|P35241-4|RDX;RDX|p.R342C|1|0.2|ENSG00000137710|chr11:110247769-110247769|G/A|missense_variant;ENSG00000147065|ENST00000360270|MSN	ENSG00000137710|ENST00000645495|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.5534362792969	3	392.553274	1174.63799	0.41027	0.00016105	0.86728	0.00034045	1.2775	0.00050151	392.55363823803674	18.976	0.31362	18.976	18.818	19.132	0					13	6	4	0	0	0	0.38666	1	5934	5934		42.864	0	1	931760			19573	4764;4186	12392	12448	19866	19866					0.0576601283414675
KEELMERLK	9	Unmodified	_KEELMERLK_					0	0	0		ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;nc|ENSG00000137710|P35241-4|RDX;RDX|p.R342C|1|0.2|ENSG00000137710|chr11:110247769-110247769|G/A|missense_variant;ENSG00000147065|ENST00000360270|MSN	ENSG00000137710|ENST00000645495|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.5536804199219	3	392.553274	1174.63799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.876	1	18.876	18.376	19.376	0								0	0	0	0.33579	1	5014	5014		28.081	0	1				19574	4764;4186	12392	12448	19867	19867					0.0576601283414675
KEELTVLLQ	9	Unmodified	_KEELTVLLQ_					0	0	0			REV__ENST00000471771.5_1_13:28014269-28014434:-|nuORF	REV__ENST00000471771.5_1_13:28014269-28014434:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.2146301269531	3	358.213135	1071.61758	3.0842	0.0011048	0.8903	0.00031892	3.9745	0.0014237	358.21353936084495	15.473	0.30126	15.473	15.38	15.681	0					19	6	4	0	0	0	0.18416	1	4082	4082		63.534	2.5619	1	6057700	+		19575	19485	12393	12449	19868	19868					0.08463165446005405
KEELYKLL	8	Unmodified	_KEELYKLL_					0	0	0		ENST00000568971.5_1_16:19075311-19078921:-|nuORF	ENST00000568971.5_1_16:19075311-19078921:-|nuORF	ENST00000568971.5_1_16:19075311-19078921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.306640625	2	518.307875	1034.6012	1.5753	0.00081649	-4.4639	-0.0023137	-2.8886	-0.0014972	518.3054557304632	14.499	0.52995	14.499	14.267	14.797	0					21	11	4	0	0	0	0.3049	1	3763	3763		60.972	0	1	1803600			19576	10778	12394	12450	19869	19869					0.08528084279919312
KEELYNLLQK	10	Unmodified	_KEELYNLLQK_					0	0	0		tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	639.8619995117188	2	639.358628	1276.7027	1.0178	0.00065077	1.4182	0.00090674	2.4361	0.0015575	639.3593080486512	21.19	0.080164	21.19	21.112	21.193	0					4	2	2	0	0	0	0.57126	1	6035	6035		47.96	17.642	1	49050			19577	22969	12395	12451	19870	19870					0.07541910911800187
KEEMKSCGVSN	11	Unmodified	_KEEMKSCGVSN_					0	0	0		ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	606.273681640625	2	606.27338	1210.53221	1.5723	0.00095327	-0.80079	-0.0004855	0.77155	0.00046777	606.2727590440923	18.657	0.07346	18.657	18.622	18.695	0					4	2	2	0	0	0	0.78029	1	4687	4687		2.7184	0	1	124260			19578	3012	12396	12452	19871	19871					-0.06463691073599875
KEENHIIK	8	Unmodified	_KEENHIIK_					0	0	0			REV__ENST00000534277.5_1_16:31724760-31767037:+|nuORF	REV__ENST00000534277.5_1_16:31724760-31767037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7850036621094	2	505.785099	1009.55564	-0.045564	-2.3046E-05	0.48699	0.00024631	0.44143	0.00022327	505.7854135116585	27.83	0.31226	27.83	27.692	28.004	0					9	7	2	0	0	0	0.53424	1	9774	9774		56.721	0.28726	1	515670	+		19579	20088	12397	12453	19872	19872					0.05124858817521272
KEENRQLK	8	Unmodified	_KEENRQLK_					0	0	0		ENST00000399417.3_1_X:106595227-106595875:-|nuORF	ENST00000399417.3_1_X:106595227-106595875:-|nuORF	ENST00000399417.3_1_X:106595227-106595875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7940673828125	2	522.793455	1043.57236	0.44756	0.00023398	0.30986	0.00016199	0.75742	0.00039597	522.793558484503	17.795	0.26852	17.795	17.729	17.998	0					21	7	5	0	0	0	0.48092	1	4602	4602		62.107	0.34285	1	3405700			19580	9238	12398	12454	19873	19873					0.05231359703475391
KEEPPQPQL	9	Unmodified	_KEEPPQPQL_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.282958984375	2	533.282389	1064.55022	0.44682	0.00023828	0.48135	0.0002567	0.92817	0.00049498	533.2826898552469	27.24	0.53176	27.24	27.001	27.533	0					39	19	3	0	0	0	0.24095	1	8340	8340		56.721	14.325	1	95213			19581	2090	12399	12455	19874	19874					0.020531352350417365
KEEPPQPQL	9	Unmodified	_KEEPPQPQL_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2824096679688	2	533.282389	1064.55022	0.14034	7.484E-05	0.27425	0.00014625	0.41459	0.00022109	533.2824964682222	27.495	0.80795	27.495	27.196	28.004	0					50	19	4	0	0	0	0.18416	1	9579	9579		63.534	8.7575	1	703040			19582	2090	12399	12455	19875	19875					0.020531352350417365
KEEPPQPQL	9	Unmodified	_KEEPPQPQL_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2825317382812	2	533.282389	1064.55022	-0.41397	-0.00022076	1.1731	0.00062557	0.75908	0.00040481	533.2829406351917	27.256	0.66569	27.256	27.017	27.682	0					48	23	3	0	0	0	0.28897	1	8799	8799		51.193	9.7661	1	257230			19583	2090	12399	12455	19876	19876					0.020531352350417365
KEEQFKQVF	9	Unmodified	_KEEQFKQVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.8118896484375	2	591.811313	1181.60807	0.25252	0.00014945	0.75351	0.00044593	1.006	0.00059538	591.8118702488937	29.907	0.17132	29.907	29.839	30.011	0					8	4	2	0	0	0	0.067603	1	10730	10730		93.143	38.367	1	289560			19584	6061	12400	12456	19877	19877					0.02453397160456916
KEEQFKQVF	9	Unmodified	_KEEQFKQVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.8126220703125	2	591.811313	1181.60807	1.5129	0.00089535	1.536	0.000909	3.0489	0.0018044	591.8118949826859	29.912	0.59262	29.912	29.599	30.192	0					19	12	2	0	0	0	0.024312	1	11139	11139		109.48	24.563	1	521090			19585	6061	12400	12456	19878	19878					0.02453397160456916
KEEQFKQVF	9	Unmodified	_KEEQFKQVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.8115234375	2	591.811313	1181.60807	3.1784	0.001881	-1.7547	-0.0010385	1.4237	0.00084254	591.8108868696562	29.855	0.66436	29.855	29.515	30.18	0					28	13	4	0	0	0	0.31937	1	11007	11007		49.536	3.0793	1	509610			19586	6061	12400	12456	19879	19879					0.02453397160456916
KEEQWKKI	8	Unmodified	_KEEQWKKI_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.8085327148438	2	544.808574	1087.60259	1.9643	0.0010702	-1.7737	-0.00096633	0.19062	0.00010385	544.807353810171	31.755	0.36718	31.755	31.65	32.017	0					15	7	3	0	0	0	0.38291	1	11899	11899		62.107	1.9892	1	594760	+		19587	18933	12401	12457	19880	19880					0.062297183686723656
KEERTQLQ	8	Unmodified	_KEERTQLQ_					0	0	0		TBC1D15|p.L440Ffs*8|1|0.12|ENSG00000121749|chr12:71907102-71907103|-/T|frameshift_variant;ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	TBC1D15|p.L440Ffs*8|1|0.12|ENSG00000121749|chr12:71907102-71907103|-/T|frameshift_variant	TBC1D15|p.L440Ffs*8|1|0.12|ENSG00000121749|chr12:71907102-71907103|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2766723632812	2	516.277638	1030.54072	-0.51122	-0.00026393	-0.5916	-0.00030543	-1.1028	-0.00056936	516.2772670133799	18.81	0.48636	18.81	18.677	19.164	0					25	10	3	0	0	0	0.43813	1	5817	5817		66.429	5.4573	1	1545000			19588	3232	12402	12458	19881	19881					0.02667366949526695
KEESIVSSL	9	Unmodified	_KEESIVSSL_					0	0	0		ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.26873779296875	2	496.268947	990.523341	-0.35924	-0.00017828	0.15138	7.5126E-05	-0.20786	-0.00010315	496.2689336499836	35.774	0.27735	35.774	35.664	35.942	0					13	7	2	0	0	0	0.037924	1	13433	13433		101.25	21.54	1	717270			19589	7945	12403	12459	19882	19882					0.027700266238639415
KEESIVSSL	9	Unmodified	_KEESIVSSL_					0	0	0		ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2685852050781	2	496.268947	990.523341	-1.4503	-0.00071976	0.87544	0.00043445	-0.57491	-0.00028531	496.2690278870469	35.535	0.17602	35.535	35.464	35.64	0					14	8	2	0	0	0	0.16806	1	12020	12020		65.465	1.2581	1	137170			19590	7945	12403	12459	19883	19883					0.027700266238639415
KEESIVSSL	9	Unmodified	_KEESIVSSL_					0	0	0		ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.268798828125	2	496.268947	990.523341	-0.7669	-0.00038059	0.69223	0.00034353	-0.07467	-3.7056E-05	496.26920865357545	35.784	0.32275	35.784	35.662	35.985	0					16	9	2	0	0	0	0.032383	1	13878	13878		106.68	15.906	1	574830			19591	7945	12403	12459	19884	19884					0.027700266238639415
KEESQQMVL	9	Unmodified	_KEESQQMVL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2744750976562	2	546.273706	1090.53286	-1.5007	-0.00081979	2.3825	0.0013015	0.88183	0.00048172	546.2752266287027	29.456	0.29878	29.456	29.24	29.539	0					13	7	3	0	0	0	0.36892	1	9895	9895		44.377	5.1244	1	139030			19592	2488	12404	12460	19885	19885					-0.008785283622501083
KEESSNKLQ	9	Unmodified	_KEESSNKLQ_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.8514709472656	3	354.852377	1061.5353	0.49013	0.00017393	-3.0109	-0.0010684	-2.5208	-0.0008945	354.85136495513757	25.871	0.59253	25.871	25.612	26.204	0					29	12	3	0	0	0	0.46194	1	8840	8840		36.447	1.2947	1	823880	+		19593	15499	12405	12461	19886	19886					0.006996433670565239
KEESSNKLQ	9	Unmodified	_KEESSNKLQ_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.8514709472656	3	354.852377	1061.5353	-2.0127	-0.00071421	-0.81169	-0.00028803	-2.8244	-0.0010022	354.8521075318684	25.637	0.41638	25.637	25.533	25.95	0					18	8	4	0	0	0	0.22837	1	8168	8168		58.23	1.7961	1	836140	+		19594	15499	12405	12461	19887	19887					0.006996433670565239
KEETFALYR	9	Unmodified	_KEETFALYR_					0	0	0			REV__ENSG00000117713|ENST00000324856|ARID1A	REV__ENSG00000117713|ENST00000324856|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.20465087890625	3	386.204751	1155.59242	0.54715	0.00021131	-0.84965	-0.00032814	-0.3025	-0.00011683	386.2043080134269	31.897	0.17502	31.897	31.818	31.993	0					14	6	3	0	0	0	0.53083	1	10267	10267		29.17	0	1	107800	+		19595	12219	12406	12462	19888	19888					0.020851106434292888
KEETKIIV	8	Unmodified	_KEETKIIV_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ADGRG4|p.D2874Rfs*16|1|0.45|ENSG00000156920|chrX:136403281-136403282|-/A|frameshift_variant;ADGRG4|p.F2955Vfs*21|1|0.32|ENSG00000156920|chrX:136405894-136405895|-/G|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;ADGRG4|p.G2486D|1|0.06|ENSG00000156920|chrX:136371388-136371388|G/A|missense_variant	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2922668457031	2	480.292225	958.569897	0.50185	0.00024104	-0.68884	-0.00033084	-0.18699	-8.9808E-05	480.29194961869166	24.747	0.29889	24.747	24.615	24.914	0					15	7	4	0	0	0	0.46013	1	8360	8360		64.207	0	1	942940			19596	78	12407	12463	19889	19889					0.0889551124580521
KEETVSKKL	9	Unmodified	_KEETVSKKL_					0	0	0			REV__TDRD5|p.K412Nfs*17|1|0.14|ENSG00000162782|chr1:179634560-179634560|A/-|frameshift_variant	REV__TDRD5|p.K412Nfs*17|1|0.14|ENSG00000162782|chr1:179634560-179634560|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	354.5447998046875	3	354.544885	1060.61282	-0.86505	-0.0003067	0.23806	8.4402E-05	-0.627	-0.0002223	354.5452307000004	19.008	0.1902	19.008	18.936	19.126	0					9	6	2	0	0	0	0.25716	1	5073	5073		61.691	8.7546	1	166050	+		19597	15842	12408	12464	19890	19890					0.0849428130322849
KEETVSKKL	9	Unmodified	_KEETVSKKL_					0	0	0			REV__TDRD5|p.K412Nfs*17|1|0.14|ENSG00000162782|chr1:179634560-179634560|A/-|frameshift_variant	REV__TDRD5|p.K412Nfs*17|1|0.14|ENSG00000162782|chr1:179634560-179634560|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.5447998046875	3	354.544885	1060.61282	1.4306	0.00050722	-2.4017	-0.0008515	-0.97103	-0.00034427	354.5442536500674	19.237	0.36294	19.237	19.031	19.394	0					10	7	2	0	0	0	0.078509	1	5920	5920		91.265	34.116	1	1703800	+		19598	15842	12408	12464	19891	19891					0.0849428130322849
KEEVKSLK	8	Unmodified	_KEEVKSLK_					0	0	0			REV__ENSG00000271321|ENST00000470691|CTAGE6	REV__ENSG00000271321|ENST00000470691|CTAGE6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7896728515625	2	480.78985	959.565146	-0.15807	-7.5998E-05	-0.48753	-0.0002344	-0.6456	-0.0003104	480.78956957197596	21.172	0.18364	21.172	21.08	21.264	0					9	4	3	0	0	0	0.25798	1	6676	6676		139.97	5.1597	1	715550	+		19599	17809	12409	12465	19892	19892					0.08374627103057719
KEEVKSLK	8	Unmodified	_KEEVKSLK_					0	0	0			REV__ENSG00000271321|ENST00000470691|CTAGE6	REV__ENSG00000271321|ENST00000470691|CTAGE6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.78912353515625	2	480.78985	959.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.867	1	20.867	20.367	21.367	0								0	0	0	1.7419	1	5898	5898		70.816	5.3508	1		+		19600	17809	12409	12465	19893	19893					0.08374627103057719
KEEVKSLK	8	Unmodified	_KEEVKSLK_					0	0	0			REV__ENSG00000271321|ENST00000470691|CTAGE6	REV__ENSG00000271321|ENST00000470691|CTAGE6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.78948974609375	2	480.78985	959.565146	-0.51688	-0.00024851	-0.065171	-3.1334E-05	-0.58205	-0.00027984	480.7898138347746	21.101	0.11727	21.101	20.995	21.112	0					6	2	3	0	0	0	0.2428	1	6931	6931		148.04	22.229	1	241710	+		19601	17809	12409	12465	19894	19894					0.08374627103057719
KEEVPVYL	8	Unmodified	_KEEVPVYL_					0	0	0			REV__ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	REV__ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7713317871094	2	488.771126	975.527698	2.6053	0.0012734	-2.3727	-0.0011597	0.23258	0.00011368	488.7700632553194	12.173	0.14662	12.173	12.122	12.269	0					9	4	3	0	0	0	0.70055	1	2540	2540		15.636	0	1	177110	+		19602	12209	12410	12466	19895	19895					0.038955358374209936
KEFDGKSL	8	Unmodified	_KEFDGKSL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2455139160156	2	462.245275	922.475997	0.11116	5.1382E-05	-0.14558	-6.7294E-05	-0.034422	-1.5911E-05	462.2451416886972	22.663	0.19723	22.663	22.594	22.791	0					13	6	3	0	0	0	0.2301	1	6451	6451		148.99	30.244	1	215200			19603	1916;11812	12411	12467	19896	19896					0.011657921435357821
KEFDGKSL	8	Unmodified	_KEFDGKSL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2449645996094	2	462.245275	922.475997	0.7103	0.00032833	-0.85505	-0.00039524	-0.14474	-6.6907E-05	462.2448675416988	23.01	0.39417	23.01	22.93	23.324	0					23	9	4	0	0	0	0.2301	1	7566	7566		148.99	30.244	1	2497700			19604	1916;11812	12411	12467	19897	19897					0.011657921435357821
KEFDGKSL	8	Unmodified	_KEFDGKSL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2451171875	2	462.245275	922.475997	-0.14718	-6.8035E-05	0.86203	0.00039847	0.71485	0.00033043	462.2456693746859	22.919	0.51765	22.919	22.811	23.329	0					25	10	3	0	0	0	0.23635	1	7813	7813		118.74	28.373	1	1380000			19605	1916;11812	12411	12467	19898	19898					0.011657921435357821
KEFDGKSL	8	Unmodified	_KEFDGKSL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2449645996094	2	462.245275	922.475997	0.71976	0.0003327	-1.6871	-0.00077984	-0.96731	-0.00044714	462.244754736027	22.903	0.31757	22.903	22.794	23.111	0					13	6	3	0	0	0	0.23768	1	7830	7830		117.81	32.65	1	756260			19606	1916;11812	12411	12467	19899	19899					0.011657921435357821
KEFDGKSL	8	Unmodified	_KEFDGKSL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.24493408203125	2	462.245275	922.475997	-0.1321	-6.1063E-05	-0.15021	-6.9432E-05	-0.28231	-0.00013049	462.245244483968	22.803	0.14872	22.803	22.706	22.855	0					5	3	2	0	0	0	0.24699	1	6864	6864		106.68	35.867	1	145530			19607	1916;11812	12411	12467	19900	19900					0.011657921435357821
KEFDGKSL	8	Unmodified	_KEFDGKSL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2449035644531	2	462.245275	922.475997	-0.46818	-0.00021641	0.73592	0.00034017	0.26774	0.00012376	462.24560737127956	22.901	0.61251	22.901	22.789	23.401	0					22	12	3	0	0	0	0.22872	1	7694	7694		124.08	28.265	1	1460900			19608	1916;11812	12411	12467	19901	19901					0.011657921435357821
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7800598144531	2	511.779482	1021.54441	1.1546	0.00059092	-0.25597	-0.000131	0.89866	0.00045992	511.77940713263996	27.686	0.27285	27.686	27.583	27.856	0					14	8	2	0	0	0	0.076532	1	8554	8554		85.862	17.016	1	357380			19609	1916	12412	12468	19902	19902					0.034500367233931684
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7793884277344	2	511.779482	1021.54441	-0.35051	-0.00017938	0.44213	0.00022627	0.091627	4.6893E-05	511.7798254842	27.679	0.35258	27.679	27.614	27.966	0					21	12	2	0	0	0	0.27249	1	8843	8843		52.937	13.684	1	383830			19610	1916	12412	12468	19903	19903					0.034500367233931684
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7796325683594	2	511.779482	1021.54441	0.46095	0.00023591	-0.40552	-0.00020753	0.055436	2.8371E-05	511.7792140540223	27.924	0.34225	27.924	27.815	28.157	0					21	7	4	0	0	0	0.015992	1	10160	10160		128.6	40.425	1	2123500			19611	1916	12412	12468	19904	19904					0.034500367233931684
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7799377441406	2	511.779482	1021.54441	0.87903	0.00044987	-0.085589	-4.3803E-05	0.79344	0.00040607	511.7793886101714	27.765	0.22062	27.765	27.671	27.892	0					11	5	3	0	0	0	0.037712	1	9115	9115		101.46	39.352	1	327050			19612	1916	12412	12468	19905	19905					0.034500367233931684
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7796325683594	2	511.779482	1021.54441	0.40992	0.00020979	-0.18772	-9.6073E-05	0.2222	0.00011372	511.77934591133527	27.748	0.34546	27.748	27.658	28.003	0					14	8	3	0	0	0	0.063171	1	9108	9108		90.601	24.172	1	494730			19613	1916	12412	12468	19906	19906					0.034500367233931684
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.779541015625	2	511.779482	1021.54441	0.039775	2.0356E-05	0.068494	3.5054E-05	0.10827	5.541E-05	511.7794860028635	27.87	0.46519	27.87	27.763	28.228	0					24	9	4	0	0	0	0.022698	1	10014	10014		117.53	18.944	1	3456000			19614	1916	12412	12468	19907	19907					0.034500367233931684
KEFDGKSLVS	10	Unmodified	_KEFDGKSLVS_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2958984375	2	555.295496	1108.57644	1.8134	0.001007	-0.77049	-0.00042785	1.0429	0.00057911	555.2949704623685	26.371	0.1785	26.371	26.287	26.465	0					11	4	3	0	0	0	0.20322	1	9098	9098		79.07	10.224	1	518310			19615	1916	12413	12469	19908	19908					0.026494044065202615
KEFDGKSLVS	10	Unmodified	_KEFDGKSLVS_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.2957763671875	2	555.295496	1108.57644	0.53162	0.00029521	0.040026	2.2226E-05	0.57165	0.00031743	555.2956890715114	26.385	0.16758	26.385	26.326	26.493	0					5	3	2	0	0	0	0.33468	1	9446	9446		63.426	8.7041	1	214270			19616	1916	12413	12469	19909	19909					0.026494044065202615
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.829833984375	2	604.829703	1207.64485	0.37086	0.00022431	0.00021086	1.2754E-07	0.37107	0.00022443	604.8297293770884	33.223	0.24302	33.223	33.147	33.39	0					17	6	4	0	0	0	0.00078532	1	12264	12264		136.52	58.251	1	626460			19617	1916	12414	12470	19910	19910					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.8295288085938	2	604.829703	1207.64485	-0.44405	-0.00026857	0.64449	0.0003898	0.20044	0.00012123	604.8300409750176	33.217	0.23849	33.217	33.141	33.379	0					14	6	3	0	0	0	0.001214	1	12252	12252		131.12	64.154	1	734780			19618	1916	12414	12470	19911	19911					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.555419921875	3	403.555561	1207.64485	-0.45759	-0.00018466	0.26813	0.00010821	-0.18946	-7.6457E-05	403.5556616112181	33.256	0.27467	33.256	33.141	33.415	0					15	7	3	0	0	0	0.63398	1	12267	12267		50.791	23.147	1	919600			19619	1916	12414	12470	19912	19912					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.8299560546875	2	604.829703	1207.64485	-0.59976	-0.00036275	0.99664	0.0006028	0.39688	0.00024005	604.8303552057064	33.04	0.23709	33.04	32.957	33.194	0					19	10	3	0	0	0	0.12878	1	11063	11063		82.831	26.397	1	251060			19620	1916	12414	12470	19913	19913					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.8307495117188	2	604.829703	1207.64485	0.70957	0.00042917	-0.083563	-5.0542E-05	0.626	0.00037862	604.8296618004254	33.232	0.39915	33.232	33.094	33.493	0					24	9	4	0	0	0	7.4289E-05	1	12677	12677		147.73	61.87	1	1578300			19621	1916	12414	12470	19914	19914					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.8300170898438	2	604.829703	1207.64485	0.44703	0.00027038	0.049711	3.0066E-05	0.49674	0.00030045	604.8298897079555	33.008	0.19932	33.008	32.927	33.127	0					13	6	3	0	0	0	0.31729	1	11533	11533		60.691	25.539	1	181520			19622	1916	12414	12470	19915	19915					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.8306274414062	2	604.829703	1207.64485	1.8681	0.0011299	-1.2463	-0.0007538	0.62181	0.00037609	604.8289592163181	33.192	0.40892	33.192	33.091	33.5	0					22	8	4	0	0	0	6.937E-06	1	12579	12579		181.87	99.633	1	2795800			19623	1916	12414	12470	19916	19916					0.04933648986366279
KEFDKEVKS	9	Unmodified	_KEFDKEVKS_					0	0	0		ENSG00000163689|ENST00000482387|CFAP20DC;ENST00000491845.5_2_3:58978268-59035690:-|nuORF;ENST00000472469.5_2_3:58870372-59035390:-|nuORF	ENSG00000163689|ENST00000482387|CFAP20DC	ENSG00000163689|ENST00000482387|CFAP20DC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.2958984375	2	555.295496	1108.57644	1.0547	0.00058567	-0.21067	-0.00011698	0.84404	0.00046869	555.2954863993795	26.349	0.16749	26.349	26.25	26.417	0					8	3	3	0	0	0	0.10506	1	9293	9293		78.264	2.6115	1	333070			19624	5594	12415	12471	19917	19917					0.026494044065202615
KEFEDKKVEL	10	Unmodified	_KEFEDKKVEL_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	632.8429565429688	2	632.84281	1263.67107	1.0775	0.00068186	-0.74324	-0.00047035	0.33422	0.00021151	632.8421328019543	24.9	0.20731	24.9	24.852	25.06	0					11	5	3	0	0	0	0.010251	1	8450	8450		120.27	13.589	1	556490			19625	2689	12416	12472	19918	19918					0.04977918157851491
KEFEDKKVEL	10	Unmodified	_KEFEDKKVEL_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	632.8427734375	2	632.84281	1263.67107	-0.20251	-0.00012816	0.33491	0.00021194	0.1324	8.3786E-05	632.8429079578168	24.882	0.21334	24.882	24.826	25.04	0					8	4	3	0	0	0	0.17524	1	8773	8773		79.489	3.3194	1	270160			19626	2689	12416	12472	19919	19919					0.04977918157851491
KEFEELKKS	9	Unmodified	_KEFEELKKS_					0	0	0			REV__ENSG00000269964|ENST00000684080|MEI4	REV__ENSG00000269964|ENST00000684080|MEI4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.311279296875	2	569.311146	1136.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.649	1	24.649	24.149	25.149	0								0	0	0	0.26817	1	8652	8652		41.427	2.673	1		+		19627	17806	12417	12473	19920	19920					0.04489977440630355
KEFEGKTL	8	Unmodified	_KEFEGKTL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2605285644531	2	476.260925	950.507297	0.0012724	6.0599E-07	0.16435	7.8275E-05	0.16563	7.8881E-05	476.2608934995609	21.747	0.24266	21.747	21.648	21.891	0					13	7	3	0	0	0	0.41	1	6033	6033		69.628	21.712	1	391720			19628	1647	12418	12474	19921	19921					0.03006365177634507
KEFEGKTL	8	Unmodified	_KEFEGKTL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2606201171875	2	476.260925	950.507297	0.35668	0.00016987	-0.86999	-0.00041434	-0.5133	-0.00024447	476.26046256130996	22.08	0.23093	22.08	21.99	22.221	0					16	5	4	0	0	0	0.24681	1	7108	7108		107.01	10.817	1	2979200			19629	1647	12418	12474	19922	19922					0.03006365177634507
KEFEGKTL	8	Unmodified	_KEFEGKTL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2608337402344	2	476.260925	950.507297	-1.5299	-0.00072861	0.94414	0.00044966	-0.58572	-0.00027896	476.2615241305743	21.753	0.19254	21.753	21.706	21.899	0					11	5	3	0	0	0	0.25987	1	6300	6300		95.815	10.9	1	356590			19630	1647	12418	12474	19923	19923					0.03006365177634507
KEFEGKTL	8	Unmodified	_KEFEGKTL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.26055908203125	2	476.260925	950.507297	-0.060508	-2.8818E-05	-0.56589	-0.00026951	-0.6264	-0.00029833	476.2606155461392	21.828	0.15224	21.828	21.736	21.888	0					5	3	2	0	0	0	0.29212	1	6407	6407		85.161	5.7098	1	481300			19631	1647	12418	12474	19924	19924					0.03006365177634507
KEFEGKTL	8	Unmodified	_KEFEGKTL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2606506347656	2	476.260925	950.507297	-0.38395	-0.00018286	-0.0074655	-3.5555E-06	-0.39141	-0.00018641	476.2608795087835	21.814	0.19577	21.814	21.761	21.957	0					9	4	3	0	0	0	0.27635	1	6400	6400		90.37	27.064	1	439530			19632	1647	12418	12474	19925	19925					0.03006365177634507
KEFEGKTL	8	Unmodified	_KEFEGKTL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.260986328125	2	476.260925	950.507297	-0.62478	-0.00029756	0.46509	0.0002215	-0.15969	-7.6054E-05	476.2612261300038	21.996	0.36712	21.996	21.887	22.254	0					20	7	4	0	0	0	0.22872	1	7238	7238		124.08	22.479	1	1776500			19633	1647	12418	12474	19926	19926					0.03006365177634507
KEFEGKTL	8	Unmodified	_KEFEGKTL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2606506347656	2	476.260925	950.507297	0.77901	0.00037101	-1.4813	-0.00070548	-0.70228	-0.00033447	476.26037750374246	21.979	0.36744	21.979	21.871	22.239	0					17	7	3	0	0	0	0.24433	1	7253	7253		136.27	22.857	1	3222800			19634	1647	12418	12474	19927	19927					0.03006365177634507
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.795166015625	2	525.795132	1049.57571	1.3586	0.00071434	-1.406	-0.00073926	-0.047387	-2.4916E-05	525.7941873852023	25.617	0.28658	25.617	25.433	25.719	0					18	10	3	0	0	0	0.029571	1	7719	7719		109.44	37.561	1	228760			19635	1647	12419	12475	19928	19928					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.795166015625	2	525.795132	1049.57571	1.9594	0.0010303	-1.0924	-0.0005744	0.86701	0.00045587	525.7945766484523	25.92	0.63491	25.92	25.624	26.259	0					35	13	5	0	0	0	0.032181	1	8868	8868		106.88	16.279	1	1727500			19636	1647	12419	12475	19929	19929					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7952270507812	2	525.795132	1049.57571	0.97663	0.00051351	-1.2768	-0.00067133	-0.30016	-0.00015782	525.7943718358972	25.881	0.59498	25.881	25.506	26.101	0					17	10	3	0	0	0	0.010427	1	9213	9213		140.11	38.86	1	1476000			19637	1647	12419	12475	19930	19930					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7955322265625	2	525.795132	1049.57571	1.1859	0.00062356	-0.75003	-0.00039436	0.43591	0.0002292	525.794778359638	25.742	0.14703	25.742	25.642	25.789	0					8	3	3	0	0	0	0.076532	1	8220	8220		85.862	24.89	1	150190			19638	1647	12419	12475	19931	19931					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7952880859375	2	525.795132	1049.57571	0.5868	0.00030853	-0.97792	-0.00051419	-0.39113	-0.00020565	525.7943321290923	25.833	0.70337	25.833	25.414	26.117	0					26	11	4	0	0	0	0.12278	1	9073	9073		74.165	12.058	1	1568800			19639	1647	12419	12475	19932	19932					0.052906097574805244
KEFEQLQK	8	Unmodified	_KEFEQLQK_					0	0	0		ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.287841796875	2	525.284931	1048.55531	5.31	0.0027893	-1.1841	-0.00062201	4.1259	0.0021673	525.2844171379513	18.634	0.16634	18.634	18.503	18.669	0					9	5	3	0	0	0	0.25143	1	4901	4901		99.375	11.621	1	273580			19640	8003	12420	12476	19933	19933					0.032974390976505674
KEFGDDKVQL	10	Unmodified	_KEFGDDKVQL_					0	0	0		nc|ENSG00000111653|Q9UNL4-5|ING4;ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4	nc|ENSG00000111653|Q9UNL4-5|ING4	nc|ENSG00000111653|Q9UNL4-5|ING4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.8065185546875	2	589.806228	1177.5979	1.3081	0.00077154	-1.205	-0.00071071	0.10313	6.0829E-05	589.8054014301416	30.52	0.25657	30.52	30.474	30.731	0					11	5	3	0	0	0	0.081397	1	11323	11323		86.882	17.254	1	335480			19641	11483	12421	12477	19934	19934					0.016207894352419316
KEFHANLIE	9	Unmodified	_KEFHANLIE_					0	0	0			REV__ENSG00000106536|ENST00000518318|POU6F2	REV__ENSG00000106536|ENST00000518318|POU6F2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3638916015625	2	550.790381	1099.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.599	1	16.599	16.099	17.099	0								0	0	0	0.10319	1	4626	4626		70.816	0.41764	1		+		19642	13826	12422	12478	19935	19935					0.02040841471944077
KEFIKIVEA	9	Unmodified	_KEFIKIVEA_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8218994140625	2	538.82115	1075.62775	2.0204	0.0010886	-0.84912	-0.00045753	1.1713	0.0006311	538.8206674249058	32.546	0.33314	32.546	32.464	32.798	0					13	8	2	0	0	0	0.052435	1	11972	11972		98.582	26.705	1	306050			19643	7635	12423	12479	19936	19936					0.09295773171243127
KEFIKIVEA	9	Unmodified	_KEFIKIVEA_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.822509765625	2	538.82115	1075.62775	1.3907	0.00074933	-0.12032	-6.4828E-05	1.2704	0.0006845	538.8211175901347	32.534	0.28516	32.534	32.416	32.701	0					12	7	2	0	0	0	0.037098	1	12369	12369		96.034	34.342	1	231550			19644	7635	12423	12479	19937	19937					0.09295773171243127
KEFIKIVEA	9	Unmodified	_KEFIKIVEA_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.8222045898438	2	538.82115	1075.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.356	1	32.356	31.856	32.856	0								0	0	0	0.29996	1	11245	11245		35.152	1.6364	1				19645	7635	12423	12479	19938	19938					0.09295773171243127
KEFIKIVEA	9	Unmodified	_KEFIKIVEA_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8214111328125	2	538.82115	1075.62775	0.68991	0.00037174	0.28157	0.00015172	0.97148	0.00052345	538.8210826156619	32.526	0.41713	32.526	32.371	32.789	0					13	8	3	0	0	0	0.01776	1	12264	12264		120.31	46.051	1	373200			19646	7635	12423	12479	19939	19939					0.09295773171243127
KEFKAKEA	8	Unmodified	_KEFKAKEA_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.76861572265625	2	475.768917	949.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.045	1	14.045	13.545	14.545	0								0	0	0	1.7419	1	3336	3336		49.536	0.094497	1				19647	4125	12424	12480	19940	19940					0.046500714145167876
KEFLTRAK	8	Unmodified	_KEFLTRAK_					0	0	0			REV__ENST00000465241.5_1_7:141255266-141315366:+|nuORF	REV__ENST00000465241.5_1_7:141255266-141315366:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.79803466796875	2	496.798009	991.581465	0.54853	0.00027251	0.22386	0.00011121	0.77239	0.00038372	496.7980836146647	29.293	0.25466	29.293	29.18	29.434	0					9	6	2	0	0	0	0.63077	1	10442	10442		44.117	1.7207	1	66634	+		19648	12853	12425	12481	19941	19941					0.08533753059805349
KEFMRQVL	8	Unmodified	_KEFMRQVL_					0	0	0		ENSG00000204560|ENST00000376442|DHX16;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7951049804688	2	525.791869	1049.56919	5.2981	0.0027857	1.6677	0.00087684	6.9657	0.0036625	525.7927928764343	25.646	0.11604	25.646	25.596	25.712	0					5	3	2	0	0	0	0.58597	1	8026	8026		51.335	7.2187	1	131330			19649	782	12426	12482	19942	19942					0.04638393325103607
KEFMRQVL	8	Unmodified	_KEFMRQVL_					0	0	0		ENSG00000204560|ENST00000376442|DHX16;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7955322265625	2	525.791869	1049.56919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.734	1	25.734	25.234	26.234	0								0	0	0	1.7419	1	8225	8225		60.972	0.85368	1				19650	782	12426	12482	19943	19943					0.04638393325103607
KEFNFPETM	9	Oxidation (M)	_KEFNFPETM(Oxidation (M))_		KEFNFPETM(1)		KEFNFPETM(62)	0	0	1			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7611694335938	2	579.760432	1157.50631	0.13508	7.8314E-05	0.57188	0.00033156	0.70696	0.00040987	579.7606670248414	33.817	0.37357	33.817	33.6	33.973	0					14	8	2	0	0	0	0.19605	1	12908	12908		62.107	9.1707	1	122870	+		19651	13474	12427	12483	19944	19944		515			-0.06614217253604693
KEFNPTKP	8	Unmodified	_KEFNPTKP_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.76068115234375	2	480.761092	959.507631	-1.3672	-0.00065728	0.52351	0.00025168	-0.84365	-0.00040559	480.7615630402887	24.143	0.16877	24.143	24.089	24.258	0					10	5	3	0	0	0	0.58597	1	7349	7349		51.335	3.4199	1	120180			19652	263	12428	12484	19945	19945					0.02625784897475114
KEFPYIKN	8	Unmodified	_KEFPYIKN_					0	0	0		tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7883911132812	2	519.784567	1037.55458	3.3611	0.001747	3.9553	0.0020559	7.3164	0.003803	519.7865278413599	13.054	0.19866	13.054	12.994	13.193	0					6	4	2	0	0	0	0.37144	1	2938	2938		63.306	4.5243	1	361670			19653	22972	12429	12485	19946	19946					0.037306444486148393
KEFQEASAL	9	Unmodified	_KEFQEASAL_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.76214599609375	2	511.761289	1021.50803	-0.13679	-7.0002E-05	1.1795	0.00060361	1.0427	0.00053361	511.7617792378978	29.865	0.148	29.865	29.81	29.958	0					9	5	2	0	0	0	0.16806	1	9455	9455		65.465	14.273	1	143700			19654	6722	12430	12486	19947	19947					-0.001868401733418068
KEFQEASAL	9	Unmodified	_KEFQEASAL_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7610778808594	2	511.761289	1021.50803	0.0014755	7.5508E-07	-0.20084	-0.00010278	-0.19937	-0.00010203	511.7611247443446	30.164	0.24511	30.164	30.038	30.284	0					18	6	4	0	0	0	0.047855	1	10834	10834		96.034	7.8567	1	759710			19655	6722	12430	12486	19948	19948					-0.001868401733418068
KEFQEASAL	9	Unmodified	_KEFQEASAL_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7611389160156	2	511.761289	1021.50803	-1.7349	-0.00088786	1.9317	0.00098859	0.19684	0.00010074	511.76217785073345	29.926	0.15999	29.926	29.858	30.018	0					9	4	3	0	0	0	0.19952	1	10133	10133		61.691	5.2575	1	185070			19656	6722	12430	12486	19949	19949					-0.001868401733418068
KEFQEASAL	9	Unmodified	_KEFQEASAL_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7614440917969	2	511.761289	1021.50803	3.1062	0.0015897	-2.4786	-0.0012684	0.62764	0.0003212	511.7602026126687	30.073	0.46336	30.073	29.862	30.325	0					14	9	3	0	0	0	0.11411	1	11102	11102		76.17	9.7404	1	984300			19657	6722	12430	12486	19950	19950					-0.001868401733418068
KEFTPPVQ	8	Unmodified	_KEFTPPVQ_					0	0	0		ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2555847167969	2	473.255643	944.496732	-0.65639	-0.00031064	0.18418	8.7166E-05	-0.47221	-0.00022348	473.25576319050515	27.758	0.50829	27.758	27.389	27.897	0					17	10	2	0	0	0	0.57171	1	10029	10029		52.937	3.4952	1	206100			19658	7970	12431	12487	19951	19951					0.022263825231902956
KEGEEQPVL	9	Unmodified	_KEGEEQPVL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7667846679688	2	514.766571	1027.51859	0.12405	6.3859E-05	0.68215	0.00035115	0.8062	0.00041501	514.7666713168655	26.119	0.25604	26.119	25.998	26.254	0					16	9	2	0	0	0	0.24334	1	7885	7885		56.434	6.8977	1	313840			19659	2292	12432	12488	19952	19952					0.005931424811024044
KEGEFSTCF	9	Unmodified	_KEGEFSTCF_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2265014648438	2	524.226225	1046.4379	0.092222	4.8345E-05	-0.060431	-3.168E-05	0.03179	1.6665E-05	524.2263524493397	38.945	0.22639	38.945	38.863	39.09	0					17	8	3	0	0	0	0.42902	1	14806	14806		39.253	3.6345	1	103120			19660	1801	12433	12489	19953	19953					-0.08346461833457397
KEGEIIHLI	9	Unmodified	_KEGEIIHLI_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP;ENST00000463175.1_1_6:47544277-47547315:+|nuORF	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.3123168945312	2	526.310949	1050.60735	0.96459	0.00050767	0.81339	0.0004281	1.778	0.00093577	526.3113771925281	37.862	0.18962	37.862	37.785	37.974	0					12	6	3	0	0	0	0.16002	1	14824	14824		66.429	6.311	1	116110			19661	7528	12434	12490	19954	19954					0.08406602511445271
KEGEIIHLI	9	Unmodified	_KEGEIIHLI_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP;ENST00000463175.1_1_6:47544277-47547315:+|nuORF	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.3118286132812	2	526.310949	1050.60735	0.61019	0.00032115	0.13432	7.0693E-05	0.74451	0.00039184	526.3109336905632	37.806	0.29777	37.806	37.708	38.005	0					13	6	3	0	0	0	0.087861	1	14801	14801		82.241	30.905	1	280960			19662	7528	12434	12490	19955	19955					0.08406602511445271
KEGFKKCR	8	Unmodified	_KEGFKKCR_					0	0	0		nc|ENSG00000154678|Q14123-3|PDE1C	nc|ENSG00000154678|Q14123-3|PDE1C	nc|ENSG00000154678|Q14123-3|PDE1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2768859863281	2	498.276386	994.53822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.53	1	19.53	19.03	20.03	0								0	0	0	1.7419	1	5306	5306		18.324	0	1				19663	11591	12435	12491	19956	19956					0.04073240010859536
KEGFVELGI	9	Unmodified	_KEGFVELGI_					0	0	0			REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2781982421875	2	496.276575	990.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.862	1	26.862	26.362	27.362	0								0	0	0	0.14517	1	8213	8213		60.972	2.19	1		+		19664	22017	12436	12492	19957	19957					0.04294938211717181
KEGGLEGLSV	10	Unmodified	_KEGGLEGLSV_					0	0	0			REV__nc|ENSG00000179528|Q6XYB7-2|LBX2	REV__nc|ENSG00000179528|Q6XYB7-2|LBX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.76849365234375	2	494.769114	987.523675	1.4486	0.00071671	-1.7121	-0.00084708	-0.26349	-0.00013037	494.76805275316804	33.377	0.15352	33.377	33.301	33.454	0					7	5	2	0	0	0	0.536	1	10870	10870		41.427	4.2675	1	42798	+		19665	21141	12437	12493	19958	19958					0.02941446343709231
KEGIHIRKHK	10	Unmodified	_KEGIHIRKHK_					0	0	0			REV__nc|ENSG00000196172|Q96N22-2|ZNF681	REV__nc|ENSG00000196172|Q96N22-2|ZNF681	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.8941955566406	3	415.922801	1244.74657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.008	1	22.008	21.508	22.508	0								0	0	0	0.4146	1	6411	6411		26.063	0	1		+		19666	17229	12438	12494	19959	19959					0.13398984919444956
KEGKIVPV	8	Unmodified	_KEGKIVPV_					0	0	0		ENST00000371870.3_1_1:47799617-47838812:+|nuORF;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.27606201171875	2	435.276378	868.538203	0.086061	3.7461E-05	-0.41789	-0.0001819	-0.33183	-0.00014444	435.2761312001422	22.357	0.14899	22.357	22.265	22.414	0					7	3	3	0	0	0	0.34985	1	7263	7263		76.847	15.875	1	79858			19667	5455	12439	12495	19960	19960					0.09867563282523406
KEGKPPISV	9	Unmodified	_KEGKPPISV_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7841796875	2	477.784567	953.554582	-0.30645	-0.00014642	-0.14562	-6.9576E-05	-0.45208	-0.00021599	477.78444209448577	23.17	0.22843	23.17	23.035	23.263	0					12	5	3	0	0	0	0.063171	1	7622	7622		90.601	5.6853	1	1059600			19668	1505	12440	12496	19961	19961					0.07594644448613508
KEGLHILQH	9	Unmodified	_KEGLHILQH_					0	0	0			REV__ENSG00000196417|ENST00000396408|ZNF765	REV__ENSG00000196417|ENST00000396408|ZNF765	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8069458007812	2	537.806365	1073.59818	1.3425	0.00072201	-0.23801	-0.000128	1.1045	0.00059401	537.8062477948059	19.091	0.26312	19.091	19.034	19.297	0					10	5	3	0	0	0	0.11411	1	5986	5986		79.713	0	1	719100	+		19669	17248	12441	12497	19962	19962					0.0643225394574074
KEGNQRNIV	9	Unmodified	_KEGNQRNIV_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1	REV__nc|ENSG00000196218|P21817-2|RYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2911376953125	2	529.291079	1056.56761	1.7395	0.00092071	-1.9975	-0.0010573	-0.25802	-0.00013657	529.2899222320724	17.44	0.2999	17.44	17.251	17.55	0					8	6	2	0	0	0	0.30951	1	5195	5195		49.442	3.4693	1	1028600	+		19670	17234	12442	12498	19963	19963					0.04158475560689112
KEGPEGANL	9	Unmodified	_KEGPEGANL_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.73260498046875	2	457.732532	913.45051	-2.6433	-0.0012099	1.8723	0.00085702	-0.77102	-0.00035292	457.73317716899174	22.415	0.28411	22.415	22.276	22.56	0					9	6	2	0	0	0	0.37744	1	6686	6686		43.651	5.8393	1	101330			19671	4866;1233	12443	12499	19964	19964					-0.009676823789163791
KEGTHKRQ	8	Unmodified	_KEGTHKRQ_					0	0	0			REV__nc|ENSG00000175395|P17030-2|ZNF25	REV__nc|ENSG00000175395|P17030-2|ZNF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2726745605469	2	492.27269	982.530826	0.83557	0.00041133	-1.0268	-0.00050547	-0.19124	-9.4142E-05	492.27225261023466	12.097	0.20007	12.097	12.049	12.249	0					10	5	3	0	0	0	0.50061	1	2504	2504		40.778	5.1599	1	491830	+		19672	16609	12444	12500	19965	19965					0.038862237347984774
KEGTHNRVHE	10	Unmodified	_KEGTHNRVHE_					0	0	0			REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	603.8014526367188	2	603.802343	1205.59013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.493	1	12.493	11.993	12.993	0								0	0	0	0.19992	1	2669	2669		64.207	2.0999	1		+		19673	14597	12445	12501	19966	19966					-0.004439250416680807
KEGVFAKEV	9	Unmodified	_KEGVFAKEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.781494140625	2	503.782025	1005.5495	-0.057336	-2.8885E-05	-0.78228	-0.0003941	-0.83962	-0.00042298	503.78172995553	23.893	0.20529	23.893	23.82	24.025	0					13	7	2	0	0	0	0.11898	1	6977	6977		75.043	0.78827	1	104920			19674	6178	12446	12502	19967	19967					0.046943405859906306
KEGVFAKEV	9	Unmodified	_KEGVFAKEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.781982421875	2	503.782025	1005.5495	-0.060455	-3.0456E-05	-0.31852	-0.00016047	-0.37898	-0.00019092	503.78200687166174	24.212	0.32583	24.212	24.079	24.405	0					18	7	3	0	0	0	0.13109	1	8130	8130		72.243	8.036	1	676320			19675	6178	12446	12502	19968	19968					0.046943405859906306
KEGVFAKEV	9	Unmodified	_KEGVFAKEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.78271484375	2	503.782025	1005.5495	-2.03	-0.0010227	1.202	0.00060553	-0.82801	-0.00041714	503.78319961935597	23.995	0.30505	23.995	23.915	24.22	0					13	7	3	0	0	0	0.24334	1	7416	7416		56.434	3.0823	1	111760			19676	6178	12446	12502	19969	19969					0.046943405859906306
KEGVIELQR	9	Unmodified	_KEGVIELQR_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.3116455078125	2	536.31148	1070.60841	1.2609	0.00067626	-0.6763	-0.00036271	0.58465	0.00031356	536.3111447601282	30.538	0.37697	30.538	30.464	30.841	0					19	8	3	0	0	0	0.015496	1	11427	11427		129.42	0.81912	1	1320500	+		19677	14595	12447	12503	19970	19970					0.07592816880310238
KEGVKDTPQ	9	Unmodified	_KEGVKDTPQ_					0	0	0		ENSG00000144161|ENST00000409573|ZC3H8	ENSG00000144161|ENST00000409573|ZC3H8	ENSG00000144161|ENST00000409573|ZC3H8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.26654052734375	2	501.266739	1000.51892	-0.11115	-5.5718E-05	0.20953	0.00010503	0.098375	4.9312E-05	501.2666537608175	19.609	0.5475	19.609	19.198	19.746	0					32	12	4	0	0	0	0.19952	1	5892	5892		61.691	1.7605	1	605770			19678	4603	12448	12504	19971	19971					0.01868562200957058
KEGVMVAAL	9	Unmodified	_KEGVMVAAL_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2615051269531	2	459.259871	916.505189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.017	1	14.017	13.517	14.517	0								0	0	0	0.13522	1	3545	3545		63.306	4.5243	1		+		19679	17428	12449	12505	19972	19972					0.043596131681624684
KEGVTVTK	8	Unmodified	_KEGVTVTK_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.25555419921875	2	431.255643	860.496732	1.0384	0.0004478	-1.1372	-0.00049041	-0.098791	-4.2604E-05	431.25505415722296	18.888	0.1208	18.888	18.839	18.959	0					6	3	2	0	0	0	0.22872	1	4791	4791		124.08	10.669	1	143290	+		19680	13133	12450	12506	19973	19973					0.06090382523188964
KEGVTVTK	8	Unmodified	_KEGVTVTK_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2554016113281	2	431.255643	860.496732	0.19065	8.2217E-05	-0.48096	-0.00020741	-0.29031	-0.0001252	431.25538327665475	19.24	0.20103	19.24	19.138	19.339	0					10	4	3	0	0	0	0.24999	1	5757	5757		101.25	2.6706	1	1304300	+		19681	13133	12450	12506	19974	19974					0.06090382523188964
KEGVTVTK	8	Unmodified	_KEGVTVTK_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.25543212890625	2	431.255643	860.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.969	1	18.969	18.469	19.469	0								0	0	0	1.7419	1	5058	5058		101.25	10.652	1		+		19682	13133	12450	12506	19975	19975					0.06090382523188964
KEHHHQSSVN	10	Unmodified	_KEHHHQSSVN_					0	0	0		ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.7877807617188	2	601.786693	1201.55883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.129	1	12.129	11.629	12.629	0								0	0	0	0.21707	1	2487	2487		62.107	0	1				19683	6874	12451	12507	19976	19976					-0.033884980757420635
KEHININL	8	Unmodified	_KEHININL_					0	0	0		LRRK1|p.K1406N|1|0.13|ENSG00000154237|chr15:101055109-101055109|G/T|missense_variant	LRRK1|p.K1406N|1|0.13|ENSG00000154237|chr15:101055109-101055109|G/T|missense_variant	LRRK1|p.K1406N|1|0.13|ENSG00000154237|chr15:101055109-101055109|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7796630859375	2	490.779816	979.545079	-0.55241	-0.00027111	-0.063489	-3.1159E-05	-0.6159	-0.00030227	490.7797561753558	18.727	0.1485	18.727	18.669	18.818	0					7	3	3	0	0	0	0.41701	1	5674	5674		68.787	0	1	291700			19684	11332	12452	12508	19977	19977					0.05448876163063687
KEHISKFAQG	10	Unmodified	_KEHISKFAQG_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.81103515625	2	572.809105	1143.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.834	1	15.834	15.334	16.334	0								0	0	0	0.35404	1	4408	4408		45.972	0	1		+		19685	15602	12453	12509	19978	19978					0.03759932737534655
KEHQQQQRQQQ	11	Unmodified	_KEHQQQQRQQQ_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2474060058594	3	489.246672	1464.71819	-0.075244	-3.6813E-05	2.2934	0.001122	2.2181	0.0010852	489.2476548765056	30.326	0.14901	30.326	30.235	30.384	0					8	3	3	0	0	0	0.77537	1	11332	11332		20.315	1.0523	1	279050			19686	7702	12454	12510	19979	19979					0.0044159048156870995
KEHVIEAL	8	Unmodified	_KEHVIEAL_					0	0	0		RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant;ENST00000444036.1_1_21:34213912-34214044:-|nuORF;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000147403|ENST00000369817|RPL10	RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant	RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7687683105469	2	469.768917	937.523281	0.61504	0.00028892	0.00038425	1.8051E-07	0.61542	0.0002891	469.76854126026547	26.127	0.91074	26.127	25.917	26.828	0					43	18	4	0	0	0	0.27242	1	9327	9327		143.89	32.238	1	1811400			19687	4778	12455	12511	19980	19980					0.052020714145328384
KEHVIEAL	8	Unmodified	_KEHVIEAL_					0	0	0		RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant;ENST00000444036.1_1_21:34213912-34214044:-|nuORF;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000147403|ENST00000369817|RPL10	RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant	RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7688903808594	2	469.768917	937.523281	-2.236	-0.0010504	1.7753	0.00083398	-0.46074	-0.00021644	469.7698340509763	25.992	0.27157	25.992	25.85	26.121	0					8	5	2	0	0	0	0.37144	1	8292	8292		74.255	13.961	1	142370			19688	4778	12455	12511	19981	19981					0.052020714145328384
KEHVIEAL	8	Unmodified	_KEHVIEAL_					0	0	0		RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant;ENST00000444036.1_1_21:34213912-34214044:-|nuORF;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000147403|ENST00000369817|RPL10	RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant	RPL10L|p.E145K|1|0.08|ENSG00000165496|chr14:46651304-46651304|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7685241699219	2	469.768917	937.523281	0.53202	0.00024993	-0.4915	-0.00023089	0.040516	1.9033E-05	469.76859869088014	26.09	0.41712	26.09	25.983	26.4	0					18	8	3	0	0	0	0.29212	1	9166	9166		85.161	13.865	1	1074700			19689	4778	12455	12511	19982	19982					0.052020714145328384
KEIDKEEHL	9	Unmodified	_KEIDKEEHL_					0	0	0		nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	570.7976684570312	2	570.798403	1139.58225	1.4643	0.00083584	-1.6178	-0.00092343	-0.15346	-8.7593E-05	570.7975256476324	18.657	0.10011	18.657	18.595	18.695	0					6	3	2	0	0	0	0.10506	1	4674	4674		78.264	10.77	1	123320			19690	6760;5090	12456	12512	19983	19983					0.018045029182076178
KEIDKEEHL	9	Unmodified	_KEIDKEEHL_					0	0	0		nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.7991333007812	2	570.798403	1139.58225	1.7499	0.00099883	-0.30548	-0.00017437	1.4444	0.00082446	570.7980588761374	18.969	0.19761	18.969	18.896	19.094	0					11	5	3	0	0	0	0.012936	1	5651	5651		134.77	41.622	1	926150			19691	6760;5090	12456	12512	19984	19984					0.018045029182076178
KEIDKEEHL	9	Unmodified	_KEIDKEEHL_					0	0	0		nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.7984008789062	2	570.798403	1139.58225	0.093694	5.348E-05	0.18071	0.00010315	0.27441	0.00015663	570.7985162190855	18.644	0.098045	18.644	18.588	18.686	0					6	3	2	0	0	0	0.30841	1	4920	4920		49.536	8.7579	1	153700			19692	6760;5090	12456	12512	19985	19985					0.018045029182076178
KEIDKEEHL	9	Unmodified	_KEIDKEEHL_					0	0	0		nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.7992553710938	2	570.798403	1139.58225	1.9955	0.001139	-0.57787	-0.00032985	1.4177	0.0008092	570.7981852236528	18.875	0.16593	18.875	18.818	18.984	0					5	3	2	0	0	0	0.00022968	1	5884	5884		190.62	57.865	1	981580			19693	6760;5090	12456	12512	19986	19986					0.018045029182076178
KEIDKEEHL	9	Unmodified	_KEIDKEEHL_					0	0	0		nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.7987060546875	2	570.798403	1139.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.751	1	18.751	18.251	19.251	0								0	0	0	0.12601	1	4956	4956		65.465	16.024	1				19694	6760;5090	12456	12512	19987	19987					0.018045029182076178
KEIDTSTKV	9	Unmodified	_KEIDTSTKV_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7822570800781	2	510.782222	1019.54989	0.99052	0.00050594	-2.106	-0.0010757	-1.1155	-0.00056979	510.7819335053884	19.444	0.18122	19.444	19.356	19.537	0					9	4	3	0	0	0	0.047855	1	5879	5879		96.034	16.583	1	550830			19695	4346	12457	12513	19988	19988					0.04089715515203807
KEIDTSTKV	9	Unmodified	_KEIDTSTKV_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7827453613281	2	510.782222	1019.54989	0.002905	1.4838E-06	0.99819	0.00050986	1.0011	0.00051134	510.78269486313127	19.352	0.21415	19.352	19.245	19.459	0					7	4	2	0	0	0	0.14673	1	5979	5979		68.626	9.8438	1	440920			19696	4346	12457	12513	19989	19989					0.04089715515203807
KEIDTSTKV	9	Unmodified	_KEIDTSTKV_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7825012207031	2	510.782222	1019.54989	1.3805	0.00070512	-0.63256	-0.0003231	0.7479	0.00038201	510.7819141567953	19.335	0.21341	19.335	19.229	19.442	0					7	4	2	0	0	0	0.013298	1	5973	5973		133.99	37.803	1	534350			19697	4346	12457	12513	19990	19990					0.04089715515203807
KEIEAMHSL	9	Unmodified	_KEIEAMHSL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.271728515625	2	529.270967	1056.52738	2.2819	0.0012077	-1.2314	-0.00065172	1.0505	0.00055602	529.2704151325034	26.677	0.19445	26.677	26.581	26.775	0					7	4	2	0	0	0	0.41113	1	9246	9246		40.778	1.5253	1	187440			19698	1514	12458	12514	19991	19991					0.0013779284593056218
KEIEGIFHA	9	Unmodified	_KEIEGIFHA_					0	0	0		SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2794799804688	2	522.279649	1042.54475	1.0587	0.00055294	0.79211	0.0004137	1.8508	0.00096665	522.7823503017142	31.869	0.25116	31.869	31.764	32.015	0					7	5	2	0	0	0	0.47038	1	12050	12050		35.618	3.6634	1	62177			19699	5124	12459	12515	19992	19992					0.025174564432290936
KEIEGVTKT	9	Unmodified	_KEIEGVTKT_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.78448486328125	2	502.784764	1003.55498	0.5388	0.0002709	-0.97684	-0.00049114	-0.43804	-0.00022024	502.7841962920237	17.498	0.091717	17.498	17.442	17.534	0					8	3	3	0	0	0	0.017421	1	4179	4179		126.24	27.613	1	169100			19700	3727	12460	12516	19993	19993					0.053340193778240064
KEIEGVTKT	9	Unmodified	_KEIEGVTKT_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7848205566406	2	502.784764	1003.55498	0.72713	0.00036559	-0.60205	-0.0003027	0.12508	6.2888E-05	502.7843883646508	17.82	0.17537	17.82	17.735	17.91	0					12	4	4	0	0	0	0.0030642	1	5106	5106		168.26	30.196	1	1480700			19701	3727	12460	12516	19994	19994					0.053340193778240064
KEIEGVTKT	9	Unmodified	_KEIEGVTKT_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.78515625	2	502.784764	1003.55498	-0.90339	-0.00045421	1.9564	0.00098363	1.053	0.00052942	502.7855822968864	17.531	0.10936	17.531	17.469	17.578	0					6	3	2	0	0	0	0.02953	1	4415	4415		109.48	26.728	1	291260			19702	3727	12460	12516	19995	19995					0.053340193778240064
KEIEGVTKT	9	Unmodified	_KEIEGVTKT_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7844543457031	2	502.784764	1003.55498	0.13333	6.7035E-05	-0.77038	-0.00038734	-0.63705	-0.0003203	502.7842042286442	17.598	0.10777	17.598	17.501	17.609	0					8	3	3	0	0	0	0.035062	1	4414	4414		104.06	38.254	1	188040			19703	3727	12460	12516	19996	19996					0.053340193778240064
KEIEGVTKT	9	Unmodified	_KEIEGVTKT_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7846374511719	2	502.784764	1003.55498	1.1586	0.00058253	-1.3924	-0.00070008	-0.2338	-0.00011755	502.7840403742653	17.776	0.21726	17.776	17.666	17.883	0					7	4	2	0	0	0	0.011389	1	5201	5201		138.06	23.168	1	1364700			19704	3727	12460	12516	19997	19997					0.053340193778240064
KEIEQLSIL	9	Unmodified	_KEIEQLSIL_					0	0	0			REV__ENST00000525040.5_1_11:9801967-9809483:-|nuORF	REV__ENST00000525040.5_1_11:9801967-9809483:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.819091796875	2	536.816064	1071.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.512	1	15.512	15.012	16.012	0								0	0	0	0.14961	1	4106	4106		52.937	10.072	1		+		19705	19983	12461	12517	19998	19998					0.08463165446028142
KEIETTGTYQL	11	Unmodified	_KEIETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	641.8300170898438	2	641.8299	1281.64525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.213	1	33.213	32.713	33.713	0								0	0	0	0.27395	1	10781	10781		55.721	16.468	1				19706	996	12462	12518	19999	19999					0.01569023915590151
KEIETTGTYQL	11	Unmodified	_KEIETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	641.8301391601562	2	641.8299	1281.64525	0.64015	0.00041086	-0.58345	-0.00037448	0.056693	3.6387E-05	641.8295319079168	33.451	0.25242	33.451	33.368	33.62	0					14	6	3	0	0	0	0.047958	1	12381	12381		106.16	21.242	1	532910			19707	996	12462	12518	20000	20000					0.01569023915590151
KEIETTGTYQL	11	Unmodified	_KEIETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	641.830322265625	2	641.8299	1281.64525	-0.78078	-0.00050113	0.58293	0.00037414	-0.19785	-0.00012699	641.8300136762668	33.283	0.086899	33.283	33.232	33.319	0					5	3	2	0	0	0	0.51117	1	11160	11160		43.419	13.101	1	35534			19708	996	12462	12518	20001	20001					0.01569023915590151
KEIETTGTYQL	11	Unmodified	_KEIETTGTYQL_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	641.8295288085938	2	641.8299	1281.64525	-2.2918	-0.001471	2.4286	0.0015588	0.13679	8.7798E-05	641.8311810903245	33.253	0.12119	33.253	33.171	33.292	0					9	3	3	0	0	0	0.058993	1	11653	11653		100.82	38.712	1	138360			19709	996	12462	12518	20002	20002					0.01569023915590151
KEIFEKKL	8	Unmodified	_KEIFEKKL_					0	0	0			REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.5462646484375	3	345.546337	1033.61718	0.68571	0.00023694	-0.71636	-0.00024754	-0.030658	-1.0594E-05	345.54606144893376	32.441	0.17233	32.441	32.342	32.514	0					10	4	3	0	0	0	0.77246	1	11920	11920		26.693	0	1	221020	+		19710	12770	12463	12519	20003	20003					0.10171790516801593
KEIGDIAGV	9	Unmodified	_KEIGDIAGV_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2529296875	2	451.2531	900.491647	-0.3145	-0.00014192	-0.2113	-9.5349E-05	-0.5258	-0.00023727	451.2530404195225	33.334	0.1373	33.334	33.267	33.404	0					10	5	2	0	0	0	0.24334	1	10822	10822		56.434	5.2411	1	190970			19711	4211	12464	12520	20004	20004					0.037420786605594
KEIGDIAGV	9	Unmodified	_KEIGDIAGV_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2527160644531	2	451.2531	900.491647	-0.50122	-0.00022618	-0.39849	-0.00017982	-0.89971	-0.000406	451.2530558668381	33.577	0.21138	33.577	33.486	33.698	0					12	5	3	0	0	0	0.063171	1	12433	12433		90.601	16.346	1	765140			19712	4211	12464	12520	20005	20005					0.037420786605594
KEIGDIAGV	9	Unmodified	_KEIGDIAGV_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.25286865234375	2	451.2531	900.491647	-0.33412	-0.00015077	-0.29637	-0.00013374	-0.63049	-0.00028451	451.2529328942034	33.599	0.24879	33.599	33.465	33.713	0					9	6	2	0	0	0	0.18416	1	12860	12860		63.534	10.597	1	263640			19713	4211	12464	12520	20006	20006					0.037420786605594
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.79296875	2	515.792589	1029.57063	0.23373	0.00012055	1.0038	0.00051775	1.2375	0.0006383	515.7928469954112	36.995	0.27629	36.995	36.885	37.162	0					23	14	3	0	0	0	0.33548	1	12114	12114		47.228	2.8505	1	221710			19714	4836	12465	12521	20007	20007					0.057023058948516336
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.79296875	2	515.792589	1029.57063	0.032931	1.6985E-05	0.96505	0.00049776	0.99798	0.00051475	515.7927255830459	37.321	0.28658	37.321	37.207	37.494	0					21	8	4	0	0	0	0.061298	1	14116	14116		91.265	16.222	1	1304800			19715	4836	12465	12521	20008	20008					0.057023058948516336
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7931518554688	2	515.792589	1029.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.236	1	37.236	36.736	37.736	0								0	0	0	0.0076242	1	14553	14553		112.3	27.135	1				19716	4836	12465	12521	20009	20009					0.057023058948516336
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7941284179688	2	515.792589	1029.57063	-1.5306	-0.00078949	1.6966	0.00087512	0.166	8.5622E-05	515.7935235905625	37.049	0.20267	37.049	36.989	37.192	0					19	9	3	0	0	0	0.27123	1	13259	13259		53.089	5.1294	1	198410			19717	4836	12465	12521	20010	20010					0.057023058948516336
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7930297851562	2	515.792589	1029.57063	3.2675	0.0016854	-1.9171	-0.0009888	1.3505	0.00069656	515.7917651854701	37.224	0.51035	37.224	37.086	37.596	0					23	10	4	0	0	0	0.061298	1	14530	14530		91.265	18.386	1	1331700			19718	4836	12465	12521	20011	20011					0.057023058948516336
KEIKDSSGHT	10	Unmodified	_KEIKDSSGHT_					0	0	0		nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;ENST00000473056.1_1_3:124207140-124210289:+|nuORF	nc|ENSG00000160145|O60229-2|KALRN	nc|ENSG00000160145|O60229-2|KALRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.280517578125	2	551.280377	1100.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.563	1	28.563	28.063	29.063	0								0	0	0	0.27575	1	9223	9223		54.722	6.7628	1				19719	5341	12466	12522	20012	20012					-4.9542586793904775E-05
KEIKGLQNY	9	Unmodified	_KEIKGLQNY_					0	0	0		ENST00000503404.5_1_4:159156813-159174676:+|nuORF;ENSG00000164124|ENST00000296529|TMEM144	ENST00000503404.5_1_4:159156813-159174676:+|nuORF	ENST00000503404.5_1_4:159156813-159174676:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.80615234375	2	546.806031	1091.59751	1.8492	0.0010112	-0.95462	-0.00052199	0.89462	0.00048918	546.8053972537256	20.822	0.16711	20.822	20.713	20.88	0					12	3	5	0	0	0	0.1115	1	6821	6821		76.774	0.60445	1	1271700			19720	5660	12467	12523	20013	20013					0.05537414506034111
KEILDTAL	8	Unmodified	_KEILDTAL_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.763671875	2	451.7633	901.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.542	1	37.542	37.042	38.042	0								0	0	0	1.7419	1	14240	14240		71.877	7.6702	1				19721	2047	12468	12524	20014	20014					0.05735249320355251
KEILEEKYKGK	11	Unmodified	_KEILEEKYKGK_					0	0	0			REV__ENST00000415623.1_1_10:70184604-70184751:+|nuORF	REV__ENST00000415623.1_1_10:70184604-70184751:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	682.8978881835938	2	682.892835	1363.77112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.599	1	39.599	39.099	40.099	0								0	0	0	0.44488	1	13302	13302		27.047	4.4677	1		+		19722	12986	12469	12525	20015	20015					0.10378155491639518
KEILGTAQSV	10	Unmodified	_KEILGTAQSV_					0	0	0		nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12;ENST00000460355.1_1_2:204055847-204055997:+|nuORF	nc|ENSG00000197958|P30050-2|RPL12	nc|ENSG00000197958|P30050-2|RPL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.298828125	2	523.298039	1044.58152	0.76534	0.0004005	0.26294	0.0001376	1.0283	0.0005381	523.2981893703894	29.065	0.18849	29.065	28.971	29.16	0					15	7	3	0	0	0	0.41729	1	9129	9129		54.343	6.3838	1	222630			19723	7512	12470	12526	20016	20016					0.06101708269147821
KEILGTAQSV	10	Unmodified	_KEILGTAQSV_					0	0	0		nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12;ENST00000460355.1_1_2:204055847-204055997:+|nuORF	nc|ENSG00000197958|P30050-2|RPL12	nc|ENSG00000197958|P30050-2|RPL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2982177734375	2	523.298039	1044.58152	0.088509	4.6317E-05	0.57	0.00029828	0.65851	0.0003446	523.2983428685874	29.359	0.29219	29.359	29.234	29.527	0					17	7	4	0	0	0	0.13359	1	10462	10462		89.561	24.404	1	1050600			19724	7512	12470	12526	20017	20017					0.06101708269147821
KEILGTAQSV	10	Unmodified	_KEILGTAQSV_					0	0	0		nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12;ENST00000460355.1_1_2:204055847-204055997:+|nuORF	nc|ENSG00000197958|P30050-2|RPL12	nc|ENSG00000197958|P30050-2|RPL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2986450195312	2	523.298039	1044.58152	0.3662	0.00019163	0.6192	0.00032403	0.9854	0.00051566	523.2981338107493	29.104	0.10642	29.104	29.05	29.157	0					7	4	2	0	0	0	0.39177	1	9441	9441		57.149	22.976	1	92860			19725	7512	12470	12526	20018	20018					0.06101708269147821
KEILGTAQSV	10	Unmodified	_KEILGTAQSV_					0	0	0		nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12;ENST00000460355.1_1_2:204055847-204055997:+|nuORF	nc|ENSG00000197958|P30050-2|RPL12	nc|ENSG00000197958|P30050-2|RPL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2980346679688	2	523.298039	1044.58152	0.00080879	4.2324E-07	0.43239	0.00022627	0.4332	0.00022669	523.2982687653005	29.358	0.2335	29.358	29.226	29.459	0					11	5	3	0	0	0	0.0084686	1	10848	10848		150.15	54.118	1	525860			19726	7512	12470	12526	20019	20019					0.06101708269147821
KEILKEIGV	9	Unmodified	_KEILKEIGV_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.821044921875	2	514.82115	1027.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.047	1	34.047	33.547	34.547	0								0	0	0	0.14961	1	13088	13088		59.931	8.403	1				19727	7247	12471	12527	20020	20020					0.11503773171239118
KEILRCEQI	9	Unmodified	_KEILRCEQI_					0	0	0		ENSG00000143669|ENST00000389793|LYST;LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3157958984375	2	566.313166	1130.61178	3.4708	0.0019656	0.87799	0.00049722	4.3488	0.0024628	566.3137909455219	36.158	0.26521	36.158	36.047	36.313	0					9	5	3	0	0	0	0.095583	1	14040	14040		80.455	3.6805	1	354870			19728	4576	12472	12528	20021	20021					0.05169743662668225
KEINTNQEAL	10	Unmodified	_KEINTNQEAL_					0	0	0		ENST00000588629.1_1_17:40610935-40622311:+|nuORF;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENST00000588629.1_1_17:40610935-40622311:+|nuORF	ENST00000588629.1_1_17:40610935-40622311:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.3015747070312	2	580.30131	1158.58807	-0.37492	-0.00021757	0.93633	0.00054336	0.56141	0.00032579	580.3018586580554	25.231	0.11894	25.231	25.171	25.29	0					4	2	2	0	0	0	0.38179	1	8943	8943		58.246	5.3095	1	144200			19729	1158	12473	12529	20022	20022					0.0151160142986555
KEIRDIMF	8	Unmodified	_KEIRDIMF_					0	0	0		tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2852783203125	2	526.283877	1050.5532	1.766	0.00092943	1.2454	0.00065545	3.0115	0.0015849	526.2844806368604	14.498	0.18983	14.498	14.406	14.596	0					9	4	3	0	0	0	0.59411	1	3783	3783		50.025	0	1	1479200			19730	22846	12474	12530	20023	20023					0.029946870881985888
KEISGSNVGI	10	Unmodified	_KEISGSNVGI_					0	0	0			REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2751770019531	2	502.274564	1002.53457	1.1472	0.00057619	0.47354	0.00023785	1.6207	0.00081403	502.27492046889535	16.98	0.2153	16.98	16.875	17.09	0					10	4	3	0	0	0	0.3029	1	4824	4824		54.722	15.47	1	1322700	+		19731	21700	12475	12531	20024	20024					0.03340848718016787
KEISSITVGAA	11	Unmodified	_KEISSITVGAA_					0	0	0			REV__chr17:81933376-81934926|451|10.96|0.66|4.06|-|ENST00000584848|PYCR1,PYCR1	REV__chr17:81933376-81934926|451|10.96|0.66|4.06|-|ENST00000584848|PYCR1,PYCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3037719726562	2	538.303321	1074.59209	0.29797	0.0001604	0.29472	0.00015865	0.59269	0.00031905	538.3035109350743	27.673	0.16131	27.673	27.586	27.747	0					5	3	2	0	0	0	0.67366	1	10075	10075		33.922	7.2287	1	79957	+		19732	12477	12476	12532	20025	20025					0.057776909235599305
KEITAEQY	8	Unmodified	_KEITAEQY_					0	0	0			REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.248291015625	2	491.248015	980.481476	0.56008	0.00027514	-0.15313	-7.5226E-05	0.40695	0.00019991	491.2480362411275	35.174	0.32261	35.174	34.997	35.32	0					16	10	2	0	0	0	0.32815	1	12470	12470		79.451	6.5718	1	131190	+		19733	18751	12477	12533	20026	20026					-0.009545290646656213
KEITALAPST	10	Unmodified	_KEITALAPST_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7926635742188	2	515.792589	1029.57063	0.22575	0.00011644	0.19945	0.00010288	0.4252	0.00021932	515.7925806198666	28.658	0.28691	28.658	28.503	28.789	0					24	12	3	0	0	0	0.54861	1	8970	8970		40.058	1.3046	1	129990			19734	1545;6995;2493	12478	12534	20027	20027					0.057023058948516336
KEITALAPST	10	Unmodified	_KEITALAPST_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.79296875	2	515.792589	1029.57063	0.032654	1.6843E-05	0.29977	0.00015462	0.33243	0.00017146	515.7926640662187	28.942	0.52685	28.942	28.758	29.285	0					22	13	3	0	0	0	0.15477	1	10282	10282		85.862	12.983	1	747420			19735	1545;6995;2493	12478	12534	20028	20028					0.057023058948516336
KEITALAPSTM	11	Unmodified	_KEITALAPSTM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.3135986328125	2	581.312832	1160.61111	-0.021479	-1.2486E-05	0.56594	0.00032899	0.54446	0.0003165	581.3134466747762	35.146	0.40118	35.146	34.904	35.305	0					20	10	4	0	0	0	0.35352	1	13132	13132		56.632	28.75	1	353260			19736	1545;6995;2493	12479	12535	20029	20029					0.03722904222968282
KEITALAPSTM	11	Unmodified	_KEITALAPSTM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.3140258789062	2	581.312832	1160.61111	-0.3472	-0.00020183	1.4219	0.00082655	1.0747	0.00062471	581.3137847152599	35.102	0.40052	35.102	34.881	35.281	0					17	11	3	0	0	0	0.50799	1	13567	13567		43.651	10.838	1	197450			19737	1545;6995;2493	12479	12535	20030	20030					0.03722904222968282
KEITALAPSTM	11	Unmodified	_KEITALAPSTM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.3125610351562	2	581.312832	1160.61111	-1.6942	-0.00098489	1.7802	0.0010349	0.085967	4.9974E-05	581.3142938560763	34.913	0.11374	34.913	34.838	34.952	0					6	4	2	0	0	0	0.6208	1	12399	12399		35.178	6.0082	1	57051			19738	1545;6995;2493	12479	12535	20031	20031					0.03722904222968282
KEITALAPSTM	11	Unmodified	_KEITALAPSTM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.31298828125	2	581.312832	1160.61111	3.2399	0.0018834	-2.1861	-0.0012708	1.0537	0.00061254	581.3118372205982	35.083	0.66383	35.083	34.7	35.364	0					22	13	3	0	0	0	0.061126	1	13511	13511		99.788	56.924	1	701840			19739	1545;6995;2493	12479	12535	20032	20032					0.03722904222968282
KEITEGKTV	9	Unmodified	_KEITEGKTV_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7843322753906	2	502.784764	1003.55498	-0.51859	-0.00026074	-1.0011	-0.00050335	-1.5197	-0.00076409	502.7845047153812	17.834	0.27075	17.834	17.668	17.939	0					7	5	2	0	0	0	0.21263	1	5376	5376		60.118	2.307	1	305810			19740	4530	12480	12536	20033	20033					0.05334019377812638
KEITQEMQTL	10	Unmodified	_KEITQEMQTL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.8136596679688	2	610.813196	1219.61184	-0.74597	-0.00045565	1.4437	0.00088185	0.69776	0.0004262	610.8140601777529	35.266	0.3503	35.266	35.181	35.531	0					14	9	2	0	0	0	0.1725	1	13218	13218		82.831	26.397	1	218220			19741	2268	12481	12537	20034	20034					0.010816988720307563
KEITQEMQTL	10	Unmodified	_KEITQEMQTL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.8135986328125	2	610.813196	1219.61184	0.46559	0.00028439	-0.76265	-0.00046583	-0.29705	-0.00018144	610.8131425669283	35.268	0.11652	35.268	35.202	35.318	0					8	3	3	0	0	0	0.41055	1	13651	13651		55.084	2.9167	1	141210			19742	2268	12481	12537	20035	20035					0.010816988720307563
KEKAEKERL	9	Unmodified	_KEKAEKERL_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.8304443359375	2	565.830037	1129.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.801	1	13.801	13.301	14.301	0								0	0	0	0.35737	1	3290	3290		23.523	0	1				19743	3725	12482	12538	20036	20036					0.0858848842608495
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.3019714355469	2	509.300581	1016.58661	0.98948	0.00050394	0.24671	0.00012565	1.2362	0.00062959	509.3007250834675	14.313	0.10238	14.313	14.255	14.357	0					11	4	3	0	0	0	0.026538	1	2931	2931		112.41	27.25	1	319980			19744	6155	12483	12539	20037	20037					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.30078125	2	509.300581	1016.58661	0.93344	0.0004754	-0.82624	-0.0004208	0.1072	5.4599E-05	509.30007360570875	14.657	0.25641	14.657	14.578	14.834	0					18	6	4	0	0	0	0.026848	1	3611	3611		112.11	31.653	1	4560300			19745	6155	12483	12539	20038	20038					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3001708984375	2	509.300581	1016.58661	-0.51422	-0.00026189	-0.076589	-3.9007E-05	-0.59081	-0.0003009	509.30041280379186	14.293	0.081929	14.293	14.252	14.333	0					4	2	2	0	0	0	0.27249	1	3080	3080		52.937	8.5595	1	166010			19746	6155	12483	12539	20039	20039					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3006591796875	2	509.300581	1016.58661	0.22456	0.00011437	0.23441	0.00011938	0.45897	0.00023376	509.3006777845222	14.655	0.21165	14.655	14.553	14.764	0					10	4	3	0	0	0	0.10506	1	3858	3858		78.264	12.798	1	2082900			19747	6155	12483	12539	20040	20040					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3003234863281	2	509.300581	1016.58661	1.1656	0.00059364	-1.5686	-0.00079887	-0.40297	-0.00020523	509.2997291242486	14.638	0.15794	14.638	14.539	14.697	0					5	3	2	0	0	0	0.082776	1	3853	3853		83.647	3.1924	1	2018800			19748	6155	12483	12539	20041	20041					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.3013610839844	2	509.300581	1016.58661	0.6114	0.00031138	0.54623	0.0002782	1.1576	0.00058958	509.30098456396473	14.391	0.1072	14.391	14.323	14.43	0					6	3	2	0	0	0	0.24334	1	3032	3032		56.434	3.4971	1	276630			19749	6155	12483	12539	20042	20042					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.3013610839844	2	509.300581	1016.58661	0.18976	9.6643E-05	1.0599	0.00053981	1.2497	0.00063645	509.3012125917868	14.375	0.11782	14.375	14.34	14.457	0					6	4	2	0	0	0	0.037924	1	3045	3045		101.25	24.478	1	251870			19750	6155	12483	12539	20043	20043					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.3006896972656	2	509.300581	1016.58661	-0.043718	-2.2265E-05	0.28472	0.00014501	0.241	0.00012274	509.300699022252	14.566	0.3196	14.566	14.508	14.828	0					10	6	3	0	0	0	0.026848	1	3662	3662		112.11	31.653	1	2729800			19751	6155	12483	12539	20044	20044					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.3006591796875	2	509.300581	1016.58661	1.3441	0.00068454	-1.2874	-0.00065566	0.056709	2.8882E-05	509.2998280191964	14.6	0.21994	14.6	14.491	14.711	0					12	4	4	0	0	0	0.019258	1	3655	3655		123.21	32.607	1	2828400			19752	6155	12483	12539	20045	20045					0.07898012131749965
KEKATEMTR	9	Unmodified	_KEKATEMTR_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2882080078125	2	547.287148	1092.55974	1.8543	0.0010149	0.20548	0.00011246	2.0598	0.0011273	547.2873040544245	12.577	0.076047	12.577	12.538	12.614	0					6	2	3	0	0	0	0.0080613	1	2684	2684		145.16	5.1852	1	222210	+		19753	16146	12484	12540	20046	20046					0.01716580248921673
KEKAVSTDL	9	Unmodified	_KEKAVSTDL_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.77667236328125	2	495.776939	989.539325	0.73391	0.00036386	-1.0859	-0.00053836	-0.35197	-0.0001745	495.7764495257205	23.268	0.23993	23.268	23.177	23.417	0					10	5	3	0	0	0	0.087861	1	7694	7694		82.241	7.9855	1	499810	+		19754	16578	12485	12541	20047	20047					0.04413732860757591
KEKDKDSKL	9	Unmodified	_KEKDKDSKL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;PARP1|p.K352Nfs*29|1|0.12|ENSG00000143799|chr1:226383139-226383139|T/-|frameshift_variant;PARP1|p.E360Rfs*29|1|0.22|ENSG00000143799|chr1:226383118-226383119|-/G|frameshift_variant;PARP1|p.S507Afs*17|2|0.28|ENSG00000143799|chr1:226379946-226379946|T/-|frameshift_variant	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.8093872070312	2	545.808771	1089.60299	1.8645	0.0010177	-1.0986	-0.00059963	0.7659	0.00041803	545.8081529241055	12.034	0.094865	12.034	11.975	12.07	0					6	3	2	0	0	0	0.25761	1	2456	2456		54.722	3.5297	1	71081			19755	4582	12486	12542	20048	20048					0.06177093297856118
KEKDKDSKL	9	Unmodified	_KEKDKDSKL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;PARP1|p.K352Nfs*29|1|0.12|ENSG00000143799|chr1:226383139-226383139|T/-|frameshift_variant;PARP1|p.E360Rfs*29|1|0.22|ENSG00000143799|chr1:226383118-226383119|-/G|frameshift_variant;PARP1|p.S507Afs*17|2|0.28|ENSG00000143799|chr1:226379946-226379946|T/-|frameshift_variant	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8091430664062	2	545.808771	1089.60299	1.9046	0.0010396	-1.3374	-0.00072994	0.56726	0.00030961	545.8081767135973	12.059	0.092054	12.059	12.018	12.11	0					4	2	2	0	0	0	0.037712	1	2630	2630		101.46	15.598	1	279120			19756	4582	12486	12542	20049	20049					0.06177093297856118
KEKDSKGTRL	10	Unmodified	_KEKDSKGTRL_					0	0	0		nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;PPP1R12A|p.N540Ifs*23|1|0.49|ENSG00000058272|chr12:79807262-79807262|T/-|frameshift_variant;ENST00000550001.1_1_12:80201004-80203592:-|nuORF	nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.3333740234375	2	581.332944	1160.65134	1.7101	0.00099413	-1.8667	-0.0010852	-0.15659	-9.1031E-05	581.3322648816661	12.97	0.10778	12.97	12.87	12.978	0					6	2	3	0	0	0	0.46989	1	2887	2887		48.602	4.9508	1	122160			19757	1301	12487	12543	20050	20050					0.07743586937749569
KEKDSKGTRL	10	Unmodified	_KEKDSKGTRL_					0	0	0		nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;PPP1R12A|p.N540Ifs*23|1|0.49|ENSG00000058272|chr12:79807262-79807262|T/-|frameshift_variant;ENST00000550001.1_1_12:80201004-80203592:-|nuORF	nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.3330688476562	2	581.332944	1160.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.982	1	12.982	12.482	13.482	0								0	0	0	0.3963	1	2901	2901		31.634	1.3165	1				19758	1301	12487	12543	20051	20051					0.07743586937749569
KEKEAENERL	10	Unmodified	_KEKEAENERL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	623.3272094726562	2	623.325316	1244.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.832	1	15.832	15.332	16.332	0								0	0	0	0.070616	1	3686	3686		85.862	27.632	1				19759	6707	12488	12544	20052	20052					0.023546753498976614
KEKEAENERL	10	Unmodified	_KEKEAENERL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	623.3256225585938	2	623.325316	1244.63608	-2.1007	-0.0013094	3.2046	0.0019975	1.1039	0.00068812	623.327199466095	15.866	0.061424	15.866	15.831	15.893	0					4	2	2	0	0	0	0.36432	1	3646	3646		60.167	13.71	1	71824			19760	6707	12488	12544	20053	20053					0.023546753498976614
KEKEFEETM	9	Unmodified	_KEKEFEETM_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.771484375	2	585.770997	1169.52744	0.074065	4.3385E-05	0.96625	0.000566	1.0403	0.00060939	585.7718212006712	24.049	0.40756	24.049	23.949	24.356	0					20	9	3	0	0	0	0.022525	1	8053	8053		117.81	43.556	1	499890			19761	7726	12489	12545	20054	20054					-0.05054251944739008
KEKEFEETM	9	Unmodified	_KEKEFEETM_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.7711791992188	2	585.770997	1169.52744	-0.30544	-0.00017892	1.1706	0.0006857	0.86516	0.00050679	585.7715409548105	23.801	0.15851	23.801	23.701	23.86	0					8	5	2	0	0	0	0.13726	1	7210	7210		70.816	16.04	1	86064			19762	7726	12489	12545	20055	20055					-0.05054251944739008
KEKEFEETM	9	Unmodified	_KEKEFEETM_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.7711791992188	2	585.770997	1169.52744	1.4117	0.00082695	-0.82884	-0.00048551	0.58288	0.00034144	585.7707694256565	24.002	0.41239	24.002	23.898	24.31	0					19	8	4	0	0	0	0.095583	1	8361	8361		80.455	29.262	1	665520			19763	7726	12489	12545	20056	20056					-0.05054251944739008
KEKEFEETM	9	Unmodified	_KEKEFEETM_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.7708740234375	2	585.770997	1169.52744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.859	1	23.859	23.359	24.359	0								0	0	0	0.18541	1	7350	7350		53.089	16.642	1				19764	7726	12489	12545	20057	20057					-0.05054251944739008
KEKEFEETM	9	Unmodified	_KEKEFEETM_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.7713012695312	2	585.770997	1169.52744	3.2068	0.0018785	-2.1533	-0.0012614	1.0535	0.00061712	585.7698942642617	23.955	0.41611	23.955	23.846	24.262	0					21	8	4	0	0	0	0.021015	1	8209	8209		120.31	45.263	1	1013400			19765	7726	12489	12545	20058	20058					-0.05054251944739008
KEKEGILQL	9	Unmodified	_KEKEGILQL_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3161010742188	2	529.316232	1056.61791	0.11185	5.9204E-05	0.27657	0.00014639	0.38842	0.00020559	529.3162597965172	32.705	0.17531	32.705	32.611	32.786	0					7	4	2	0	0	0	0.25761	1	12043	12043		54.722	0	1	283250			19766	3458	12490	12546	20059	20059					0.09186585165866745
KEKEKAERL	9	Unmodified	_KEKEKAERL_					0	0	0			REV__FAM114A1|p.L320Ffs*5|1|0.25|ENSG00000197712|chr4:38922778-38922779|-/T|frameshift_variant	REV__FAM114A1|p.L320Ffs*5|1|0.25|ENSG00000197712|chr4:38922778-38922779|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.8309936523438	2	565.830037	1129.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.853	1	13.853	13.353	14.353	0								0	0	0	0.34598	1	3248	3248		26.063	1.8606	1		+		19767	17353	12491	12547	20060	20060					0.0858848842608495
KEKENKKE	8	Unmodified	_KEKENKKE_					0	0	0		ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENST00000508756.2_1_5:98204705-98207835:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7879028320312	2	516.787838	1031.56112	-0.50901	-0.00026305	0.68635	0.0003547	0.17734	9.1647E-05	516.7881735150746	12.545	0.1329	12.545	12.455	12.588	0					5	3	2	0	0	0	0.3961	1	2853	2853		71.296	2.5089	1	114330			19768	10212	12492	12548	20061	20061					0.046605376093339146
KEKEPEEEL	9	Unmodified	_KEKEPEEEL_					0	0	0		FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.783935546875	2	565.782418	1129.55028	0.13646	7.7208E-05	0.65649	0.00037143	0.79295	0.00044864	565.7829399926843	21.33	0.26763	21.33	21.223	21.491	0					16	8	2	0	0	0	0.28897	1	6079	6079		51.193	1.6567	1	102810			19769	4905	12493	12549	20062	20062					-0.009309095556091052
KEKEPEEEL	9	Unmodified	_KEKEPEEEL_					0	0	0		FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.7827758789062	2	565.782418	1129.55028	1.9152	0.0010836	-0.66156	-0.0003743	1.2536	0.00070927	565.7818516936883	21.517	0.41829	21.517	21.357	21.776	0					20	8	3	0	0	0	0.022525	1	7162	7162		117.81	13.754	1	652480			19770	4905	12493	12549	20063	20063					-0.009309095556091052
KEKEPEEEL	9	Unmodified	_KEKEPEEEL_					0	0	0		FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.7822875976562	2	565.782418	1129.55028	-1.1366	-0.00064309	1.6159	0.00091426	0.47928	0.00027117	565.783277619385	21.383	0.25133	21.383	21.278	21.529	0					9	5	2	0	0	0	0.25761	1	6223	6223		54.722	11.858	1	113510			19771	4905	12493	12549	20064	20064					-0.009309095556091052
KEKEQAKQL	9	Unmodified	_KEKEQAKQL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.3164672851562	2	551.316763	1100.61897	1.2988	0.00071606	-0.78815	-0.00043452	0.51067	0.00028154	551.3166316999333	13.469	0.10456	13.469	13.41	13.514	0					9	5	2	0	0	0	0.037098	1	2642	2642		96.034	13.283	1	158650			19772	7371	12494	12550	20065	20065					0.07268799534745085
KEKEQAKQL	9	Unmodified	_KEKEQAKQL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.3173217773438	2	551.316763	1100.61897	0.57866	0.00031903	0.21471	0.00011837	0.79337	0.0004374	551.3169763202634	13.738	0.3231	13.738	13.653	13.976	0					15	8	4	0	0	0	0.001056	1	3184	3184		180.87	40.899	1	1086200			19773	7371	12494	12550	20066	20066					0.07268799534745085
KEKEQAKQL	9	Unmodified	_KEKEQAKQL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.317138671875	2	551.316763	1100.61897	-0.35608	-0.00019631	1.5253	0.00084094	1.1692	0.00064463	551.3173565106491	13.508	0.10101	13.508	13.433	13.534	0					10	5	3	0	0	0	0.0037134	1	2790	2790		136.27	3.5102	1	164400			19774	7371	12494	12550	20067	20067					0.07268799534745085
KEKEQAKQL	9	Unmodified	_KEKEQAKQL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.3170776367188	2	551.316763	1100.61897	0.13984	7.7096E-05	0.37896	0.00020893	0.5188	0.00028602	551.3169376413052	13.729	0.24789	13.729	13.625	13.873	0					11	5	3	0	0	0	0.0093724	1	3415	3415		138.06	13.982	1	1031900			19775	7371	12494	12550	20068	20068					0.07268799534745085
KEKEQAKQL	9	Unmodified	_KEKEQAKQL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.8182983398438	2	551.316763	1100.61897	-1.3488	-0.00074364	3.0705	0.0016928	1.7217	0.0009492	551.3186090159618	13.508	0.071328	13.508	13.468	13.539	0					5	3	2	0	0	0	0.012936	1	2725	2725		118.74	14.686	1	96598			19776	7371	12494	12550	20069	20069					0.07268799534745085
KEKERRVA	8	Unmodified	_KEKERRVA_					0	0	0		nc|ENSG00000125741|Q9H6K4-2|OPA3	nc|ENSG00000125741|Q9H6K4-2|OPA3	nc|ENSG00000125741|Q9H6K4-2|OPA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3036804199219	2	508.30399	1014.59343	-0.10258	-5.2142E-05	-0.87405	-0.00044428	-0.97663	-0.00049643	508.3035688280653	14.415	0.26719	14.415	14.308	14.575	0					11	5	3	0	0	0	0.68432	1	3590	3590		35.618	2.8059	1	170560			19777	11510	12495	12551	20070	20070					0.08671369802993922
KEKEYEIERL	10	Unmodified	_KEKEYEIERL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.24139404296875	3	446.241753	1335.70343	-0.44572	-0.0001989	0.097503	4.351E-05	-0.34822	-0.00015539	446.2418156653053	26.611	0.31864	26.611	26.502	26.821	0					10	6	2	0	0	0	0.62612	1	9438	9438		31.068	10.036	1	249090			19778	1919	12496	12552	20071	20071					0.04900705560839924
KEKGAIRL	8	Unmodified	_KEKGAIRL_					0	0	0		nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1;ENST00000435265.5_1_22:20106640-20110140:+|nuORF;ENST00000488484.1_1_22:20105172-20110015:+|nuORF	nc|ENSG00000099901|P43487-2|RANBP1	nc|ENSG00000099901|P43487-2|RANBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7923278808594	2	457.792727	913.5709	-0.15262	-6.9868E-05	-0.60076	-0.00027502	-0.75337	-0.00034489	457.7924539785283	18.569	0.11697	18.569	18.51	18.627	0					4	2	2	0	0	0	0.65148	1	5734	5734		40.778	0	1	104070			19779	1946	12497	12553	20072	20072					0.11065770405377862
KEKGKISSL	9	Unmodified	_KEKGKISSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.30328369140625	2	495.303124	988.591695	0.74165	0.00036734	-0.51067	-0.00025294	0.23097	0.0001144	495.30274168707024	16.944	0.25843	16.944	16.858	17.117	0					17	6	4	0	0	0	0.082776	1	4687	4687		83.647	8.6037	1	1525000			19780	3727	12498	12554	20073	20073					0.09694315994374847
KEKGKISSL	9	Unmodified	_KEKGKISSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.3029479980469	2	495.303124	988.591695	3.4234	0.0016956	-2.8572	-0.0014152	0.56614	0.00028041	495.3017430869752	16.651	0.070297	16.651	16.593	16.664	0					5	3	2	0	0	0	0.15163	1	4035	4035		67.494	2.0283	1	55293			19781	3727	12498	12554	20074	20074					0.09694315994374847
KEKGKISSL	9	Unmodified	_KEKGKISSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.3033142089844	2	495.303124	988.591695	-1.2388	-0.00061356	1.0958	0.00054274	-0.14297	-7.0814E-05	495.30355176032293	16.638	0.074615	16.638	16.606	16.681	0					5	3	2	0	0	0	0.24334	1	4032	4032		56.434	12.057	1	34505			19782	3727	12498	12554	20075	20075					0.09694315994374847
KEKGKISSL	9	Unmodified	_KEKGKISSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.3038330078125	2	495.303124	988.591695	0.10678	5.2891E-05	-0.67778	-0.0003357	-0.57099	-0.00028281	495.30273542815235	16.699	0.0877	16.699	16.646	16.734	0					6	3	2	0	0	0	0.063171	1	4008	4008		90.601	13.283	1	103290			19783	3727	12498	12554	20076	20076					0.09694315994374847
KEKGKISSL	9	Unmodified	_KEKGKISSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.3029479980469	2	495.303124	988.591695	0.085394	4.2296E-05	-0.33024	-0.00016357	-0.24485	-0.00012127	495.303161158144	16.706	0.056252	16.706	16.666	16.722	0					4	2	2	0	0	0	0.054723	1	4016	4016		93.598	22.781	1	80287			19784	3727	12498	12554	20077	20077					0.09694315994374847
KEKGKISSL	9	Unmodified	_KEKGKISSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.30291748046875	2	495.303124	988.591695	0.93251	0.00046187	-1.1683	-0.00057865	-0.23576	-0.00011677	495.30249318969754	16.883	0.4085	16.883	16.681	17.09	0					12	8	3	0	0	0	0.035106	1	4777	4777		104.01	10.87	1	1299900			19785	3727	12498	12554	20078	20078					0.09694315994374847
KEKGNKSGAQ	10	Unmodified	_KEKGNKSGAQ_					0	0	0		CCDC153|p.K10N|1|0.43|ENSG00000248712|chr11:119195458-119195458|C/A|missense_variant	CCDC153|p.K10N|1|0.43|ENSG00000248712|chr11:119195458-119195458|C/A|missense_variant	CCDC153|p.K10N|1|0.43|ENSG00000248712|chr11:119195458-119195458|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.52581787109375	3	349.524484	1045.55162	3.0356	0.001061	0.99555	0.00034797	4.0311	0.001409	349.5248099231852	23.804	0.61231	23.804	23.7	24.312	0					31	12	5	0	0	0	0.52707	1	8133	8133		31.634	2.0835	1	7720900			19786	399	12499	12555	20079	20079					0.030667693238001448
KEKGSTLDL	9	Unmodified	_KEKGSTLDL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7767639160156	2	495.776939	989.539325	0.72293	0.00035841	-1.108	-0.00054931	-0.38504	-0.0001909	495.77640203640266	23.184	0.16801	23.184	23.044	23.212	0					8	3	3	0	0	0	0.13726	1	7953	7953		70.816	1.1886	1	437700			19787	1927	12500	12556	20080	20080					0.04413732860757591
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.8087768554688	2	544.808574	1087.60259	1.1804	0.00064311	-0.8061	-0.00043917	0.37433	0.00020394	544.8081078036458	31.526	0.29258	31.526	31.421	31.713	0					26	13	3	0	0	0	0.099758	1	10125	10125		72.879	6.45	1	158110			19788	3248	12501	12557	20081	20081					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8087158203125	2	544.808574	1087.60259	0.3825	0.00020839	0.054937	2.993E-05	0.43744	0.00023832	544.8086750032003	31.794	0.5384	31.794	31.685	32.223	0					32	13	3	0	0	0	0.039418	1	11609	11609		93.598	8.4368	1	1028200			19789	3248	12501	12557	20082	20082					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.80859375	2	544.808574	1087.60259	0.49743	0.00027101	0.27809	0.00015151	0.77552	0.00042251	544.8086838149093	31.556	0.41176	31.556	31.477	31.889	0					32	16	3	0	0	0	0.14578	1	10448	10448		71.877	8.5712	1	529530			19790	3248	12501	12557	20083	20083					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.8758239746094	3	363.541475	1087.60259	-0.955	-0.00034718	0.36062	0.0001311	-0.59438	-0.00021608	363.5415072006367	31.545	0.26172	31.545	31.477	31.739	0					16	10	2	0	0	0	0.41113	1	10461	10461		40.778	3.6191	1	111230			19791	3248	12501	12557	20084	20084					0.062297183686723656
KEKGWHFLLRR	11	Unmodified	_KEKGWHFLLRR_					0	0	0		HHLA1|p.V60Wfs*21|1|0.14|ENSG00000132297|chr8:132100096-132100096|C/-|frameshift_variant	HHLA1|p.V60Wfs*21|1|0.14|ENSG00000132297|chr8:132100096-132100096|C/-|frameshift_variant	HHLA1|p.V60Wfs*21|1|0.14|ENSG00000132297|chr8:132100096-132100096|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	735.9270629882812	2	735.428045	1468.84154	-1.6554	-0.0012174	-1.428	-0.0010502	-3.0835	-0.0022677	735.9283174308857	21.997	0.36282	21.997	21.842	22.204	0					13	7	3	0	0	0	0.7887	1	7370	7370		17.468	2.6031	1	187540			19792	11208	12502	12558	20085	20085					0.1258691839061612
KEKHGFQR	8	Unmodified	_KEKHGFQR_					0	0	0			REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2835083007812	2	515.283057	1028.55156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.773	1	16.773	16.273	17.273	0								0	0	0	1.7419	1	3884	3884		23.042	0	1		+		19793	20000	12503	12559	20086	20086					0.038428141144549954
KEKHGFQR	8	Unmodified	_KEKHGFQR_					0	0	0			REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2831420898438	2	515.283057	1028.55156	-0.11152	-5.7464E-05	1.4304	0.00073704	1.3188	0.00067958	515.2832717691045	16.794	0.15713	16.794	16.72	16.877	0					10	6	3	0	0	0	0.68432	1	4105	4105		35.618	4.0885	1	45681	+		19794	20000	12503	12559	20087	20087					0.038428141144549954
KEKHYYIGI	9	Unmodified	_KEKHYYIGI_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CP|p.K282Nfs*23|1|0.33|ENSG00000047457|chr3:149207553-149207553|T/-|frameshift_variant	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.8165283203125	2	575.816399	1149.61824	-0.27093	-0.00015601	0.51874	0.0002987	0.24781	0.00014269	575.8166655906186	22.542	0.1661	22.542	22.434	22.6	0					5	3	2	0	0	0	0.13519	1	7654	7654		71.296	7.0884	1	458140			19795	1220	12504	12560	20088	20088					0.04942004885697315
KEKIQALPT	9	Unmodified	_KEKIQALPT_					0	0	0		ENSG00000070423|ENST00000292363|RNF126	ENSG00000070423|ENST00000292363|RNF126	ENSG00000070423|ENST00000292363|RNF126	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3112182617188	2	514.310949	1026.60735	-0.48269	-0.00024825	0.62066	0.00031921	0.13797	7.0962E-05	514.3112795235404	25.231	0.61254	25.231	24.729	25.341	0					23	12	2	0	0	0	0.42902	1	8776	8776		39.253	13.679	1	571210			19796	1448	12505	12561	20089	20089					0.09510602511409161
KEKIQTGL	8	Unmodified	_KEKIQTGL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000561132.5_1_15:91029339-91034840:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7762145996094	2	458.776742	915.538931	-0.15766	-7.2333E-05	-0.53933	-0.00024743	-0.697	-0.00031977	458.77659513041533	20.836	0.21736	20.836	20.679	20.896	0					8	4	3	0	0	0	0.23635	1	6802	6802		118.74	17.142	1	263690			19797	4398	12506	12562	20090	20090					0.07778357931567825
KEKIQTGL	8	Unmodified	_KEKIQTGL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000561132.5_1_15:91029339-91034840:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7762756347656	2	458.776742	915.538931	-0.44287	-0.00020318	-0.12956	-5.944E-05	-0.57244	-0.00026262	458.7767324464101	20.802	0.21648	20.802	20.692	20.909	0					10	4	4	0	0	0	0.2498	1	6680	6680		101.6	2.9713	1	433180			19798	4398	12506	12562	20091	20091					0.07778357931567825
KEKISDTQ	8	Unmodified	_KEKISDTQ_					0	0	0		ENSG00000165807|ENST00000298705|PPP1R36	ENSG00000165807|ENST00000298705|PPP1R36	ENSG00000165807|ENST00000298705|PPP1R36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.753173828125	2	474.753464	947.492375	0.61538	0.00029215	-1.5644	-0.00074272	-0.94904	-0.00045056	474.75284458248814	17.327	0.85744	17.327	16.996	17.853	0					44	17	6	0	0	0	0.29286	1	5082	5082		84.916	5.2029	1	2931000			19799	5831	12507	12563	20092	20092					0.01652873309626557
KEKITFIT	8	Unmodified	_KEKITFIT_					0	0	0		CLASRP|p.E323K|1|0.5|ENSG00000104859|chr19:45064073-45064073|G/A|missense_variant	CLASRP|p.E323K|1|0.5|ENSG00000104859|chr19:45064073-45064073|G/A|missense_variant	CLASRP|p.E323K|1|0.5|ENSG00000104859|chr19:45064073-45064073|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.29266357421875	2	490.294768	978.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.5	1	11.5	11	12	0								0	0	0	1.7419	1	2370	2370		26.796	6.3143	1				19800	549	12508	12564	20093	20093					0.08483815108411363
KEKITPLTL	9	Unmodified	_KEKITPLTL_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.8294677734375	2	521.828975	1041.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.288	1	32.288	31.788	32.788	0								0	0	0	0.001501	1	12158	12158		124.08	13.96	1				19801	2760	12509	12565	20094	20094					0.12424059688282796
KEKKDILVL	9	Unmodified	_KEKKDILVL_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.5691833496094	3	362.569142	1084.6856	0.47908	0.0001737	-0.69571	-0.00025224	-0.21663	-7.8543E-05	362.5689034916387	27.702	0.67858	27.702	27.529	28.208	0					33	16	4	0	0	0	0.46194	1	9693	9693		36.447	0	1	549280			19802	8085	12510	12566	20095	20095					0.14664035096643602
KEKKEEEKM	9	Unmodified	_KEKKEEEKM_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.8082275390625	2	589.807913	1177.60127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.138	1	12.138	11.638	12.638	0								0	0	0	0.012333	1	2491	2491		152.06	34.25	1				19803	6444	12511	12567	20096	20096					0.019577162175664853
KEKKEEEKM	9	Unmodified	_KEKKEEEKM_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.8084106445312	2	589.807913	1177.60127	1.4784	0.00087199	-0.79276	-0.00046758	0.68567	0.00040441	589.8076029424594	12.142	0.13519	12.142	12.057	12.192	0					6	3	2	0	0	0	0.058553	1	2669	2669		96.034	37.252	1	612100			19804	6444	12511	12567	20097	20097					0.019577162175664853
KEKKEEEKM	9	Unmodified	_KEKKEEEKM_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.8081665039062	2	589.807913	1177.60127	1.3096	0.00077243	-0.37586	-0.00022168	0.93377	0.00055074	589.8074140857061	12.052	0.13407	12.052	12.014	12.148	0					5	3	2	0	0	0	0.0054332	1	2484	2484		140.11	51.935	1	289440			19805	6444	12511	12567	20098	20098					0.019577162175664853
KEKKEEEKM	9	Oxidation (M)	_KEKKEEEKM(Oxidation (M))_		KEKKEEEKM(1)		KEKKEEEKM(100)	0	0	1		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.806396484375	2	597.805371	1193.59619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.324	1	10.324	9.8244	10.824	0								0	0	0	0.018495	1	1967	1967		101.46	32.614	1				19806	6444	12511	12568	20099	20099		266			0.007134123549576543
KEKKEEEKM	9	Oxidation (M)	_KEKKEEEKM(Oxidation (M))_		KEKKEEEKM(1)		KEKKEEEKM(58)	0	0	1		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.8054809570312	2	597.805371	1193.59619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.271	1	10.271	9.7714	10.771	0								0	0	0	0.1568	1	1954	1954		58.246	16.82	1				19807	6444	12511	12568	20100	20100		266			0.007134123549576543
KEKKEEQVI	9	Unmodified	_KEKKEEQVI_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.824951171875	2	565.824421	1129.63429	0.13518	7.6488E-05	0.1744	9.8679E-05	0.30958	0.00017517	565.824464773755	16.552	0.87236	16.552	16.471	17.343	0					79	31	4	0	0	0	0.00054273	2	3986	3986;4133		159.28	35.196	1	9025000			19808	5707	12512	12569	20101;20102	20101					0.0746566633195016
KEKKEEQVI	9	Unmodified	_KEKKEEQVI_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.8251953125	2	565.824421	1129.63429	0.79314	0.00044878	-0.12551	-7.1014E-05	0.66763	0.00037776	565.8242426616122	16.598	0.62304	16.598	16.516	17.139	0					49	18	5	0	0	0	0.0040239	1	3961	3961		134.77	10.685	1	7335600			19809	5707	12512	12569	20103	20103					0.0746566633195016
KEKKEEQVI	9	Unmodified	_KEKKEEQVI_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.8248291015625	2	565.824421	1129.63429	1.7055	0.000965	-2.0477	-0.0011586	-0.34221	-0.00019363	565.8236051186376	16.788	1.3941	16.788	16.681	18.076	0					74	28	4	0	0	0	0.022589	1	4708	4708		112.11	0	1	69738000			19810	5707	12512	12569	20104	20104					0.0746566633195016
KEKKFYPE	8	Unmodified	_KEKKFYPE_					0	0	0			REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.78857421875	2	534.78985	1067.56515	-1.3435	-0.00071848	-1.9987	-0.0010689	-3.3422	-0.0017874	534.7888943453402	23.027	0.13923	23.027	22.939	23.079	0					6	3	2	0	0	0	0.51384	1	6966	6966		58.782	9.2459	1	227100	+		19811	17423	12513	12570	20105	20105					0.034066271030496864
KEKKKSAAL	9	Unmodified	_KEKKKSAAL_					0	0	0		nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25;ENSG00000163219|ENST00000409202|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8189392089844	2	501.818941	1001.62333	2.9243	0.0014675	-1.909	-0.00095799	1.0153	0.00050949	501.8180996758289	12.444	0.18305	12.444	12.343	12.526	0					7	5	2	0	0	0	0.07136	1	2653	2653		87.696	10.922	1	150760			19812	5539	12514	12571	20106	20106					0.12258308748323543
KEKKLTSDL	9	Unmodified	_KEKKLTSDL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.3140258789062	2	531.313689	1060.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.01	1	19.01	18.51	19.51	0								0	0	0	0.095784	1	4836	4836		72.879	18.157	1				19813	3441	12515	12572	20107	20107					0.0849428130322849
KEKKLTSDL	9	Unmodified	_KEKKLTSDL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3143310546875	2	531.313689	1060.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.01	1	19.01	18.51	19.51	0								0	0	0	0.061959	1	5072	5072		82.75	20.643	1				19814	3441	12515	12572	20108	20108					0.0849428130322849
KEKKLTSDL	9	Unmodified	_KEKKLTSDL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.314208984375	2	531.313689	1060.61282	1.1784	0.00062613	-0.63653	-0.0003382	0.54192	0.00028793	531.3135105016913	19.155	0.14351	19.155	19.061	19.205	0					7	3	3	0	0	0	0.34452	1	5156	5156		46.457	3.9823	1	168460			19815	3441	12515	12572	20109	20109					0.0849428130322849
KEKKLTSDL	9	Unmodified	_KEKKLTSDL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.3137817382812	2	531.313689	1060.61282	-1.2354	-0.00065639	0.24877	0.00013217	-0.98664	-0.00052421	531.3146005790804	19.146	0.1869	19.146	19.048	19.234	0					7	4	2	0	0	0	0.11411	1	5149	5149		76.17	19.736	1	463740			19816	3441	12515	12572	20110	20110					0.0849428130322849
KEKKLTSDL	9	Unmodified	_KEKKLTSDL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.3136596679688	2	531.313689	1060.61282	1.6927	0.00089936	-1.4533	-0.00077217	0.23938	0.00012719	531.3128582985549	19.237	0.21468	19.237	19.129	19.343	0					12	4	4	0	0	0	0.015992	1	5921	5921		128.6	40.425	1	1468900			19817	3441	12515	12572	20111	20111					0.0849428130322849
KEKKLTSDL	9	Unmodified	_KEKKLTSDL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.31396484375	2	531.313689	1060.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.29	1	19.29	18.79	19.79	0								0	0	0	0.0077941	1	5936	5936		112.11	40.23	1				19818	3441	12515	12572	20112	20112					0.0849428130322849
KEKKRDSSL	9	Unmodified	_KEKKRDSSL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8145751953125	2	545.814387	1089.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.442	1	12.442	11.942	12.942	0								0	0	0	0.2595	1	2647	2647		35.152	12.572	1				19819	5298	12516	12573	20113	20113					0.07299915392013645
KEKKRTVE	8	Unmodified	_KEKKRTVE_					0	0	0		ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000196313|Q96HA1-2|POM121;nc|ENSG00000196313|Q96HA1-3|POM121	ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000196313|Q96HA1-3|POM121	nc|ENSG00000196313|Q96HA1-3|POM121	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.3070068359375	2	509.306198	1016.59784	-1.8578	-0.0009462	2.2819	0.0011622	0.42404	0.00021597	509.30749544271254	13.018	0.078789	13.018	12.965	13.044	0					7	4	2	0	0	0	0.42778	1	2582	2582		67.494	2.0283	1	107390			19820	7348;11707	12517	12574	20114	20114					0.09020834225896124
KEKKVINKL	9	Unmodified	_KEKKVINKL_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.2446594238281	3	367.24477	1098.71248	0.75791	0.00027834	-0.81012	-0.00029751	-0.052209	-1.9173E-05	367.24448806035366	16.581	0.33741	16.581	16.492	16.83	0					17	8	3	0	0	0	0.3269	1	4535	4535		47.96	2.9373	1	599740			19821	2417	12518	12575	20115	20115					0.16707143707867544
KEKKVINKL	9	Unmodified	_KEKKVINKL_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.36376953125	2	550.363516	1098.71248	0.54896	0.00030213	0.13774	7.5807E-05	0.6867	0.00037794	550.3635786966862	16.57	0.18114	16.57	16.481	16.662	0					10	4	3	0	0	0	0.022698	1	4526	4526		124.08	46.763	1	595290			19822	2417	12518	12575	20116	20116					0.16707143707867544
KEKKVINKL	9	Unmodified	_KEKKVINKL_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3639526367188	2	550.363516	1098.71248	1.6886	0.00092934	-0.5999	-0.00033016	1.0887	0.00059918	550.3630900849121	16.524	0.21652	16.524	16.413	16.63	0					11	4	3	0	0	0	0.082776	1	4752	4752		67.494	16.301	1	941810			19823	2417	12518	12575	20117	20117					0.16707143707867544
KEKLCYVAL	9	Carbamidomethyl (C)	_KEKLC(Carbamidomethyl (C))YVAL_	KEKLC(1)YVAL		KEKLC(71)YVAL		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.313232421875	2	562.312635	1122.61072	0.46	0.00025866	-0.086296	-4.8525E-05	0.3737	0.00021014	562.3126959409461	32.419	0.37831	32.419	32.331	32.709	0					25	9	4	0	0	0	0.13726	1	11889	11889		70.816	12.586	1	925140			19824	1545;6995;2493;7397;7857	12519	12576	20118	20118	62				0.0543152929376447
KEKLCYVAL	9	Carbamidomethyl (C)	_KEKLC(Carbamidomethyl (C))YVAL_	KEKLC(1)YVAL		KEKLC(85)YVAL		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.3135986328125	2	562.312635	1122.61072	1.8551	0.0010431	-1.4473	-0.00081384	0.4078	0.00022931	562.3119788858618	32.409	0.37655	32.409	32.274	32.65	0					27	9	4	0	0	0	0.078509	1	12300	12300		85.161	32.224	1	1148100			19825	1545;6995;2493;7397;7857	12519	12576	20119	20119	62				0.0543152929376447
KEKLEAEM	8	Unmodified	_KEKLEAEM_					0	0	0		ENSG00000136824|ENST00000374793|SMC2;SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant;nc|ENSG00000136824|O95347-2|SMC2	ENSG00000136824|ENST00000374793|SMC2	ENSG00000136824|ENST00000374793|SMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2520751953125	2	489.252243	976.489932	0.77863	0.00038094	-1.0403	-0.00050898	-0.2617	-0.00012804	489.25175838236333	21.829	0.10134	21.829	21.779	21.881	0					4	2	2	0	0	0	0.2498	1	7012	7012		101.6	19.296	1	255320			19826	4112	12520	12577	20120	20120					0.00074701580308556
KEKLEAEM	8	Unmodified	_KEKLEAEM_					0	0	0		ENSG00000136824|ENST00000374793|SMC2;SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant;nc|ENSG00000136824|O95347-2|SMC2	ENSG00000136824|ENST00000374793|SMC2	ENSG00000136824|ENST00000374793|SMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.251953125	2	489.252243	976.489932	-0.075695	-3.7034E-05	-0.79427	-0.0003886	-0.86997	-0.00042563	489.25190618133774	21.734	0.11799	21.734	21.675	21.793	0					4	2	2	0	0	0	0.27635	1	7262	7262		90.37	19.074	1	192610			19827	4112	12520	12577	20121	20121					0.00074701580308556
KEKLEITTR	9	Unmodified	_KEKLEITTR_					0	0	0		CCDC171|p.K55R|1|0.16|ENSG00000164989|chr9:15571746-15571746|A/G|missense_variant	CCDC171|p.K55R|1|0.16|ENSG00000164989|chr9:15571746-15571746|A/G|missense_variant	CCDC171|p.K55R|1|0.16|ENSG00000164989|chr9:15571746-15571746|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3326416015625	2	559.332413	1116.65027	0.51686	0.0002891	0.14077	7.874E-05	0.65764	0.00036784	559.3324799218686	13.779	0.12655	13.779	13.694	13.82	0					5	3	2	0	0	0	0.22837	1	3221	3221		58.23	1.5977	1	283230			19828	402	12521	12578	20122	20122					0.09661372568825755
KEKLKNKH	8	Unmodified	_KEKLKNKH_					0	0	0		ENST00000359028.6_1_7:91671982-91672039:+|nuORF	ENST00000359028.6_1_7:91671982-91672039:+|nuORF	ENST00000359028.6_1_7:91671982-91672039:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.8168334960938	2	512.816733	1023.61891	0.0096655	4.9566E-06	0.18579	9.5276E-05	0.19545	0.00010023	512.8168242086192	17.054	0.13375	17.054	16.969	17.102	0					7	3	3	0	0	0	0.59411	1	4751	4751		50.025	0	1	646760			19829	8842	12522	12579	20123	20123					0.10804844325423346
KEKLLVKQQ	9	Unmodified	_KEKLLVKQQ_					0	0	0			REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.90460205078125	3	371.904524	1112.69174	0.39316	0.00014622	-0.35469	-0.00013191	0.038474	1.4309E-05	371.90444076033305	18.287	0.14145	18.287	18.198	18.339	0					10	3	4	0	0	0	0.21263	1	5332	5332		60.118	15.096	1	1350500	+		19830	15869	12523	12580	20124	20124					0.13990553328198985
KEKLQIVEM	9	Unmodified	_KEKLQIVEM_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1;SERPINH1|p.E249K|1|0.25|ENSG00000149257|chr11:75568962-75568962|G/A|missense_variant;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3184204101562	2	559.317917	1116.62128	1.8263	0.0010215	-1.1825	-0.00066142	0.6438	0.00036009	559.3172764069119	31.709	0.21608	31.709	31.602	31.818	0					11	4	3	0	0	0	0.12834	1	11895	11895		72.879	14.097	1	737370			19831	4869	12524	12581	20125	20125					0.06763511948201995
KEKLRGLGL	9	Unmodified	_KEKLRGLGL_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.3268737792969	2	507.326934	1012.63931	-0.089248	-4.5278E-05	-0.15756	-7.9935E-05	-0.24681	-0.00012521	507.3269079413964	18.861	0.34995	18.861	18.589	18.939	0					19	10	3	0	0	0	0.30951	1	4714	4714		49.442	5.0644	1	148730	+		19832	14468	12525	12582	20126	20126					0.13350014985246617
KEKLSKSE	8	Unmodified	_KEKLSKSE_					0	0	0		CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.77142333984375	2	474.771657	947.528761	0.30325	0.00014398	-0.84595	-0.00040163	-0.54269	-0.00025766	474.77122549645895	17.543	0.24748	17.543	17.46	17.708	0					13	6	4	0	0	0	0.2451	1	4959	4959		110.12	8.5192	1	2821500			19833	380	12526	12583	20127	20127					0.05289750206338795
KEKLSKSE	8	Unmodified	_KEKLSKSE_					0	0	0		CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7712707519531	2	474.771657	947.528761	0.61417	0.00029159	-1.3468	-0.00063941	-0.73261	-0.00034782	474.77106355467237	17.492	0.26251	17.492	17.388	17.651	0					10	5	4	0	0	0	0.22502	1	5213	5213		131.03	12.288	1	3163400			19834	380	12526	12583	20128	20128					0.05289750206338795
KEKLSKSE	8	Unmodified	_KEKLSKSE_					0	0	0		CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7713317871094	2	474.771657	947.528761	-0.44383	-0.00021072	-0.053536	-2.5417E-05	-0.49737	-0.00023614	474.7716705553888	17.273	0.12091	17.273	17.227	17.348	0					7	3	3	0	0	0	0.25102	1	4281	4281		99.375	6.1795	1	287370			19835	380	12526	12583	20129	20129					0.05289750206338795
KEKLSKSE	8	Unmodified	_KEKLSKSE_					0	0	0		CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7711486816406	2	474.771657	947.528761	-0.60315	-0.00028636	-0.2981	-0.00014153	-0.90125	-0.00042789	474.77141210780064	17.484	0.16776	17.484	17.379	17.547	0					10	3	4	0	0	0	0.23898	1	5041	5041		116.9	12.157	1	695620			19836	380	12526	12583	20130	20130					0.05289750206338795
KEKMEREK	8	Oxidation (M)	_KEKM(Oxidation (M))EREK_		KEKM(1)EREK		KEKM(100)EREK	0	0	1		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant;nc|ENSG00000166947|P16452-3|EPB42;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.287841796875	2	547.287148	1092.55974	0.53566	0.00029316	1.1579	0.0006337	1.6936	0.00092686	547.287701652313	12.591	0.13436	12.591	12.542	12.676	0					5	3	2	0	0	0	0.24806	1	2725	2725		104.75	11.551	1	311710			19837	5954	12527	12584	20131	20131		242			0.01716580248921673
KEKNEKGAL	9	Unmodified	_KEKNEKGAL_					0	0	0		ENST00000477306.1_1_1:156713442-156714029:-|nuORF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000477306.1_1_1:156713442-156714029:-|nuORF	ENST00000477306.1_1_1:156713442-156714029:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.79022216796875	2	508.790381	1015.56621	0.19888	0.00010119	-0.69797	-0.00035512	-0.49909	-0.00025393	508.79019299238905	13.259	0.11031	13.259	13.203	13.313	0					6	2	3	0	0	0	0.022589	1	3197	3197		91.265	13.001	1	197180			19838	4537	12528	12585	20132	20132					0.059048414719427456
KEKNEKGAL	9	Unmodified	_KEKNEKGAL_					0	0	0		ENST00000477306.1_1_1:156713442-156714029:-|nuORF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000477306.1_1_1:156713442-156714029:-|nuORF	ENST00000477306.1_1_1:156713442-156714029:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.79010009765625	2	508.790381	1015.56621	-0.075845	-3.8589E-05	-0.48989	-0.00024925	-0.56573	-0.00028784	508.7901762344192	13.266	0.16349	13.266	13.159	13.323	0					5	3	2	0	0	0	0.090954	1	3046	3046		56.434	12.057	1	284420			19839	4537	12528	12585	20133	20133					0.059048414719427456
KEKNETKLK	9	Unmodified	_KEKNETKLK_					0	0	0			REV__ENST00000589803.5_1_17:67102167-67114054:-|nuORF	REV__ENST00000589803.5_1_17:67102167-67114054:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3328247070312	2	559.332413	1116.65027	3.4685	0.0019401	-2.3576	-0.0013187	1.1109	0.00062137	559.3309758175467	13.741	0.2104	13.741	13.638	13.848	0					7	4	2	0	0	0	0.36892	1	3277	3277		44.377	0	1	274840	+		19840	12028	12529	12586	20134	20134					0.09661372568825755
KEKNIEKLE	9	Unmodified	_KEKNIEKLE_					0	0	0		tr|U7T3F6|U7T3F6_FUSNURNAmethyltransferase,TrmHfamily,group3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00624PE=4SV=1	tr|U7T3F6|U7T3F6_FUSNURNAmethyltransferase,TrmHfamily,group3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00624PE=4SV=1	tr|U7T3F6|U7T3F6_FUSNURNAmethyltransferase,TrmHfamily,group3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00624PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.8246459960938	2	565.824421	1129.63429	0.13518	7.6488E-05	0.1744	9.8679E-05	0.30958	0.00017517	565.824464773755	16.552	0.87236	16.552	16.471	17.343	0					79	31	4	0	0	0	0.15593	1	4154	4154		78.264	18.146	1	9025000			19841	22967	12530	12587	20135	20135					0.0746566633195016
KEKPAAQVE	9	Unmodified	_KEKPAAQVE_					0	0	0			REV__ENSG00000185298|ENST00000329214|CCDC137	REV__ENSG00000185298|ENST00000329214|CCDC137	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.27734375	2	500.277106	998.53966	0.65917	0.00032977	-0.55158	-0.00027594	0.10759	5.3826E-05	500.2767015151104	16.822	0.28902	16.822	16.74	17.029	0					9	7	2	0	0	0	0.12834	1	4650	4650		72.879	3.2516	1	388860	+		19842	17018	12531	12588	20136	20136					0.04033152580609567
KEKPEEESL	9	Unmodified	_KEKPEEESL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.7774047851562	2	544.777136	1087.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.743	1	18.743	18.243	19.243	0								0	0	0	0.0537	1	4716	4716		85.161	5.4482	1				19843	4828	12532	12589	20137	20137					-0.0005489221005063882
KEKPEEESL	9	Unmodified	_KEKPEEESL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.777587890625	2	544.777136	1087.53972	1.8708	0.0010192	-1.0043	-0.00054713	0.86649	0.00047204	544.7764267491718	19.047	0.173	19.047	18.965	19.138	0					12	4	4	0	0	0	0.04067	1	5688	5688		98.582	13.421	1	954620			19844	4828	12532	12589	20138	20138					-0.0005489221005063882
KEKPEEESL	9	Unmodified	_KEKPEEESL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.7785034179688	2	544.777136	1087.53972	0.48774	0.00026571	0.73443	0.0004001	1.2222	0.00066581	544.7776899053532	18.736	0.14942	18.736	18.653	18.802	0					10	5	2	0	0	0	0.085655	1	4935	4935		82.75	17.285	1	214870			19845	4828	12532	12589	20139	20139					-0.0005489221005063882
KEKPEEESL	9	Unmodified	_KEKPEEESL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7774047851562	2	544.777136	1087.53972	1.9498	0.0010622	-1.6067	-0.00087532	0.34308	0.0001869	544.7762307732808	18.976	0.41394	18.976	18.867	19.281	0					14	8	3	0	0	0	0.035062	1	5930	5930		104.06	13.687	1	1922700			19846	4828	12532	12589	20140	20140					-0.0005489221005063882
KEKPEEESL	9	Unmodified	_KEKPEEESL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.7772827148438	2	544.777136	1087.53972	1.1017	0.00060019	-0.65471	-0.00035667	0.44701	0.00024352	544.7767066945185	18.81	0.18181	18.81	18.717	18.899	0					8	4	3	0	0	0	0.02953	1	4991	4991		109.48	27.238	1	138420			19847	4828	12532	12589	20141	20141					-0.0005489221005063882
KEKPEEESL	9	Unmodified	_KEKPEEESL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.7777709960938	2	544.777136	1087.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.857	1	18.857	18.357	19.357	0								0	0	0	0.0537	1	5005	5005		85.161	13.283	1				19848	4828	12532	12589	20142	20142					-0.0005489221005063882
KEKPPITVV	9	Unmodified	_KEKPPITVV_					0	0	0		nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;ENST00000592474.1_1_17:74309820-74309979:-|nuORF;ENST00000472686.1_1_17:74309820-74324990:-|nuORF;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-4|PRPSAP2;ENST00000472686.1_1_17:74309820-74324990:-|nuORF	ENST00000472686.1_1_17:74309820-74324990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.8153381347656	2	505.815867	1009.61718	-0.076019	-3.8452E-05	-0.057171	-2.8918E-05	-0.13319	-6.737E-05	505.8155760394589	25.659	0.19422	25.659	25.514	25.708	0					8	6	2	0	0	0	0.50858	1	7744	7744		31.53	3.6476	1	48069			19849	4430;5412	12533	12590	20143	20143					0.11275790516799589
KEKPPITVV	9	Unmodified	_KEKPPITVV_					0	0	0		nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;ENST00000592474.1_1_17:74309820-74309979:-|nuORF;ENST00000472686.1_1_17:74309820-74324990:-|nuORF;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-4|PRPSAP2;ENST00000472686.1_1_17:74309820-74324990:-|nuORF	ENST00000472686.1_1_17:74309820-74324990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.8157653808594	2	505.815867	1009.61718	-0.044421	-2.2469E-05	0.0097564	4.9349E-06	-0.034664	-1.7534E-05	505.81592326473265	25.954	0.35057	25.954	25.732	26.083	0					15	6	3	0	0	0	0.21419	1	8901	8901		59.931	19.153	1	348380			19850	4430;5412	12533	12590	20144	20144					0.11275790516799589
KEKPPITVV	9	Unmodified	_KEKPPITVV_					0	0	0		nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;ENST00000592474.1_1_17:74309820-74309979:-|nuORF;ENST00000472686.1_1_17:74309820-74324990:-|nuORF;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-4|PRPSAP2;ENST00000472686.1_1_17:74309820-74324990:-|nuORF	ENST00000472686.1_1_17:74309820-74324990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.8155212402344	2	505.815867	1009.61718	-0.73423	-0.00037138	1.0828	0.00054771	0.3486	0.00017632	505.8163162477872	25.681	0.27206	25.681	25.499	25.771	0					15	8	3	0	0	0	0.12834	1	8021	8021		72.879	28.762	1	119590			19851	4430;5412	12533	12590	20145	20145					0.11275790516799589
KEKPPITVV	9	Unmodified	_KEKPPITVV_					0	0	0		nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;ENST00000592474.1_1_17:74309820-74309979:-|nuORF;ENST00000472686.1_1_17:74309820-74324990:-|nuORF;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-4|PRPSAP2;ENST00000472686.1_1_17:74309820-74324990:-|nuORF	ENST00000472686.1_1_17:74309820-74324990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.8159484863281	2	505.815867	1009.61718	1.074	0.00054325	-1.0588	-0.00053556	0.015207	7.6919E-06	505.81529577570063	25.926	0.39681	25.926	25.687	26.084	0					16	6	4	0	0	0	0.12834	1	9232	9232		72.879	26.907	1	1194700			19852	4430;5412	12533	12590	20146	20146					0.11275790516799589
KEKPPITVV	9	Unmodified	_KEKPPITVV_					0	0	0		nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;ENST00000592474.1_1_17:74309820-74309979:-|nuORF;ENST00000472686.1_1_17:74309820-74324990:-|nuORF;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-4|PRPSAP2;ENST00000472686.1_1_17:74309820-74324990:-|nuORF	ENST00000472686.1_1_17:74309820-74324990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.8157653808594	2	505.815867	1009.61718	-1.9701	-0.00099649	2.2441	0.0011351	0.27401	0.0001386	505.81702177051284	25.759	0.18055	25.759	25.597	25.778	0					7	4	2	0	0	0	0.3269	1	8234	8234		47.96	13.787	1	143200			19853	4430;5412	12533	12590	20147	20147					0.11275790516799589
KEKPTGPPA	9	Unmodified	_KEKPTGPPA_					0	0	0		nc|ENSG00000204472|P55008-2|AIF1;ENSG00000204472|ENST00000376059|AIF1	nc|ENSG00000204472|P55008-2|AIF1	nc|ENSG00000204472|P55008-2|AIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.76055908203125	2	462.761092	923.507631	0.68211	0.00031565	-1.5032	-0.00069561	-0.82108	-0.00037996	462.7603426071374	14.497	0.32719	14.497	14.262	14.589	0					13	8	2	0	0	0	0.078509	1	3537	3537		85.161	20.954	1	183380			19854	7705	12534	12591	20148	20148					0.04281784897466423
KEKPTGPPA	9	Unmodified	_KEKPTGPPA_					0	0	0		nc|ENSG00000204472|P55008-2|AIF1;ENSG00000204472|ENST00000376059|AIF1	nc|ENSG00000204472|P55008-2|AIF1	nc|ENSG00000204472|P55008-2|AIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.76092529296875	2	462.761092	923.507631	-0.47159	-0.00021823	-0.060785	-2.8129E-05	-0.53238	-0.00024636	462.7611224341595	14.384	0.21762	14.384	14.308	14.525	0					6	4	2	0	0	0	0.023928	1	3596	3596		115.49	49.065	1	67325			19855	7705	12534	12591	20149	20149					0.04281784897466423
KEKPTGPPA	9	Unmodified	_KEKPTGPPA_					0	0	0		nc|ENSG00000204472|P55008-2|AIF1;ENSG00000204472|ENST00000376059|AIF1	nc|ENSG00000204472|P55008-2|AIF1	nc|ENSG00000204472|P55008-2|AIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.76068115234375	2	462.761092	923.507631	0.78051	0.00036119	-1.4664	-0.0006786	-0.68591	-0.00031741	462.76037812024896	14.399	0.46666	14.399	14.042	14.508	0					17	9	3	0	0	0	0.078509	1	3585	3585		85.161	13.283	1	180250			19856	7705	12534	12591	20150	20150					0.04281784897466423
KEKPTTAL	8	Unmodified	_KEKPTTAL_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2635803222656	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.538	1	17.538	17.038	18.038	0								0	0	0	1.7419	1	4967	4967		76.774	8.2894	1				19857	3594	12535	12592	20151	20151					0.06458669040216591
KEKQAAAEK	9	Unmodified	_KEKQAAAEK_					0	0	0		ENST00000416785.1_1_6:28699967-28700618:+|nuORF	ENST00000416785.1_1_6:28699967-28700618:+|nuORF	ENST00000416785.1_1_6:28699967-28700618:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7823791503906	2	501.782556	1001.55056	-0.088032	-4.4173E-05	-0.18742	-9.4046E-05	-0.27546	-0.00013822	501.7825438535544	16.188	0.10145	16.188	16.135	16.236	0					6	2	3	0	0	0	0.11898	1	4346	4346		75.043	5.4157	1	316830			19858	9366	12536	12593	20152	20152					0.049845549548990675
KEKQDKVVL	9	Unmodified	_KEKQDKVVL_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;ENST00000596403.1_1_19:38694578-38696877:+|nuORF	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8300170898438	2	543.829506	1085.64446	1.9918	0.0010832	-1.7723	-0.00096383	0.21948	0.00011936	543.828687113359	18.45	0.52131	18.45	18.19	18.711	0					20	10	4	0	0	0	0.026848	1	5657	5657		112.11	29.357	1	959610			19859	2394	12537	12594	20153	20153					0.10506274057183873
KEKQLFKK	8	Unmodified	_KEKQLFKK_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8297729492188	2	524.829309	1047.64407	0.1166	6.1197E-05	0.62605	0.00032857	0.74265	0.00038977	524.8296899331287	23.889	0.26599	23.889	23.779	24.045	0					12	5	3	0	0	0	0.25873	1	8278	8278		96.19	0.37527	1	572590			19860	5030	12538	12595	20154	20154					0.12214899127980061
KEKRAARVK	9	Unmodified	_KEKRAARVK_					0	0	0		ENST00000479713.1_1_Y:15591430-15591511:-|nuORF	ENST00000479713.1_1_Y:15591430-15591511:-|nuORF	ENST00000479713.1_1_Y:15591430-15591511:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.5690612792969	3	362.568247	1084.68291	3.123	0.0011323	-0.68854	-0.00024964	2.4345	0.00088268	362.567995277492	27.585	0.96786	27.585	27.424	28.392	0					37	19	2	0	0	0	0.3269	1	9880	9880		47.96	7.1814	1	2055000			19861	9943	12539	12596	20155	20155					0.1439562448235847
KEKRIFYL	8	Unmodified	_KEKRIFYL_					0	0	0		CON__Q58D62	CON__Q58D62	CON__Q58D62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.8277587890625	2	548.829309	1095.64407	-1.5072	-0.00082721	-1.2913	-0.00070871	-2.7985	-0.0015359	548.8285510073582	16.468	0.71109	16.468	16.394	17.105	0					32	20	2	0	0	0	0.61938	1	3921	3921		45.952	45.952	1	128710		+	19862	661	12540	12597	20156	20156					0.1000689912798407
KEKRPPQTL	9	Unmodified	_KEKRPPQTL_					0	0	0		ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.8278198242188	2	548.827298	1095.64004	0.37994	0.00020852	0.47024	0.00025808	0.85018	0.0004666	548.8275845874175	16.462	0.60446	16.462	16.368	16.972	0					38	22	3	0	0	0	0.085309	2	3933	3933;4093		58.246	13.869	1	130720			19863	6427	12541	12598	20157;20158	20157					0.09604809634288358
KEKRPPQTL	9	Unmodified	_KEKRPPQTL_					0	0	0		ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	366.2204895019531	3	366.220624	1095.64004	-0.98259	-0.00035984	0.73049	0.00026752	-0.25209	-9.2322E-05	366.2208932768824	16.491	0.19265	16.491	16.368	16.56	0					11	5	3	0	0	0	0.41113	1	3955	3955		40.778	10.46	1	100610			19864	6427	12541	12598	20159	20159					0.09604809634288358
KEKRPPQTL	9	Unmodified	_KEKRPPQTL_					0	0	0		ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.827392578125	2	548.827298	1095.64004	1.7593	0.00096558	-1.2204	-0.00066977	0.53897	0.0002958	548.8266651800066	16.656	0.80309	16.656	16.515	17.318	0					43	16	3	0	0	0	0.019316	1	4798	4798		96.665	31.2	1	960430			19865	6427	12541	12598	20160	20160					0.09604809634288358
KEKRPPQTL	9	Unmodified	_KEKRPPQTL_					0	0	0		ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.8268432617188	2	548.827298	1095.64004	1.1599	0.00063659	-0.35598	-0.00019537	0.80393	0.00044122	548.8273483218838	16.535	0.5404	16.535	16.403	16.943	0					21	15	2	0	0	0	0.30257	1	3910	3910		35.152	3.6222	1	98131			19866	6427	12541	12598	20161	20161					0.09604809634288358
KEKRPPQTL	9	Unmodified	_KEKRPPQTL_					0	0	0		ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8284912109375	2	548.827298	1095.64004	1.8489	0.0010147	-1.0632	-0.00058353	0.78572	0.00043122	548.8267985760824	16.738	0.71076	16.738	16.583	17.293	0					39	14	3	0	0	0	0.01942	1	4685	4685		96.034	27.247	1	896420			19867	6427	12541	12598	20162	20162					0.09604809634288358
KEKRQEQIA	9	Unmodified	_KEKRQEQIA_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.3202514648438	2	565.319837	1128.62512	1.7735	0.0010026	-1.209	-0.00068348	0.56448	0.00031911	565.3191096177515	13.94	0.17879	13.94	13.897	14.076	0					8	4	3	0	0	0	0.095583	1	3299	3299		80.455	4.2849	1	416470			19868	4145	12542	12599	20163	20163					0.06595317766300468
KEKRQEQIA	9	Unmodified	_KEKRQEQIA_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.820556640625	2	565.319837	1128.62512	0.82033	0.00046375	0.64993	0.00036742	1.4703	0.00083117	565.3204120005819	13.708	0.082627	13.708	13.669	13.751	0					6	4	2	0	0	0	0.14578	1	2790	2790		68.846	34.674	1	148890			19869	4145	12542	12599	20164	20164					0.06595317766300468
KEKRQEQIA	9	Unmodified	_KEKRQEQIA_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.3204956054688	2	565.319837	1128.62512	1.7159	0.00097002	-0.9996	-0.00056509	0.71628	0.00040493	565.3193487232835	13.906	0.40515	13.906	13.8	14.205	0					19	8	4	0	0	0	0.047855	1	3328	3328		96.034	15.579	1	1049400			19870	4145	12542	12599	20165	20165					0.06595317766300468
KEKRSHRR	8	Unmodified	_KEKRSHRR_					0	0	0		nc|ENSG00000070882|Q9H4L5-3|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;OSBPL3|p.S626Qfs*26|1|0.12|ENSG00000070882|chr7:24830776-24830776|A/-|frameshift_variant	nc|ENSG00000070882|Q9H4L5-3|OSBPL3	nc|ENSG00000070882|Q9H4L5-3|OSBPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.827880859375	2	548.825955	1095.63736	3.799	0.002085	-0.57471	-0.00031541	3.2243	0.0017696	548.8256452746004	16.722	0.99803	16.722	16.565	17.563	0					41	20	3	0	0	0	0.38291	1	4676	4676		62.107	0	1	927250			19871	1460	12543	12600	20166	20166					0.0933639901998049
KEKRYNRNT	9	Unmodified	_KEKRYNRNT_					0	0	0			REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	604.830078125	2	604.82836	1207.64217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.993	1	32.993	32.493	33.493	0								0	0	0	0.24544	1	10703	10703		44.377	6.869	1		+		19872	19087	12544	12601	20167	20167					0.046652383720811486
KEKSIDSLS	9	Unmodified	_KEKSIDSLS_					0	0	0			REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.77471923828125	2	503.774396	1005.53424	0.75382	0.00037975	0.35217	0.00017741	1.106	0.00055717	503.77428844571494	18.522	0.1407	18.522	18.431	18.571	0					5	3	2	0	0	0	0.27249	1	5449	5449		52.937	1.744	1	260610	+		19873	22047	12545	12602	20168	20168					0.03169428998160129
KEKTEQETL	9	Unmodified	_KEKTEQETL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5;ENSG00000258472|ENST00000531839|unknown;ENST00000577259.1_1_17:26907024-26910624:-|nuORF	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.291015625	2	553.290411	1104.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.145	1	17.145	16.645	17.645	0								0	0	0	0.051298	1	4214	4214		85.862	17.016	1				19874	1562	12546	12603	20169	20169					0.01816796681305277
KEKTWREI	8	Unmodified	_KEKTWREI_					0	0	0			REV__PROCA1|p.I159Sfs*14|1|0.48|ENSG00000167525|chr17:28704095-28704095|G/-|frameshift_variant	REV__PROCA1|p.I159Sfs*14|1|0.48|ENSG00000167525|chr17:28704095-28704095|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3079223632812	2	545.306198	1088.59784	0.52061	0.00028389	1.8496	0.0010086	2.3702	0.0012925	545.3076002299337	27.465	0.14897	27.465	27.412	27.561	0					10	5	3	0	0	0	0.64144	1	8753	8753		42.396	1.618	1	85691	+		19875	16195	12547	12604	20170	20170					0.057088342259021374
KEKVSLLQ	8	Unmodified	_KEKVSLLQ_					0	0	0		nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENST00000536573.6_1_12:1213918-1353789:+|nuORF;ERC1|p.L811Yfs*3|1|0.08|ENSG00000082805|chr12:1236848-1236849|-/ATGTA|frameshift_variant;ERC1|p.K806Efs*29|1|0.44|ENSG00000082805|chr12:1236824-1236825|-/A|frameshift_variant	nc|ENSG00000082805|Q8IUD2-5|ERC1	nc|ENSG00000082805|Q8IUD2-5|ERC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7922058105469	2	472.792392	943.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.962	1	23.962	23.462	24.462	0								0	0	0	1.7419	1	8006	8006		64.207	0	1				19876	1684	12548	12605	20171	20171					0.0961893096566655
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7957763671875	2	523.795663	1045.57677	0.089964	4.7123E-05	0.27041	0.00014164	0.36037	0.00018876	523.7956529258425	19.118	0.13787	19.118	19.031	19.169	0					6	3	2	0	0	0	0.035106	1	5718	5718		104.01	15.837	1	2029100			19877	2006	12549	12606	20172	20172					0.055808241263775926
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7958374023438	2	523.795663	1045.57677	0.52165	0.00027324	0.54969	0.00028792	1.0713	0.00056116	523.7958186829391	18.799	0.20852	18.799	18.734	18.943	0					12	6	4	0	0	0	0.014413	1	4967	4967		131.62	10.748	1	878850			19878	2006	12549	12606	20173	20173					0.055808241263775926
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7957763671875	2	523.795663	1045.57677	1.7885	0.00093683	-1.2902	-0.0006758	0.49835	0.00026103	523.794951887559	19.025	0.31324	19.025	18.967	19.281	0					11	6	2	0	0	0	0.0030642	1	5952	5952		168.26	17.897	1	5005800			19879	2006	12549	12606	20174	20174					0.055808241263775926
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.795654296875	2	523.795663	1045.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.909	1	18.909	18.409	19.409	0								0	0	0	0.023427	1	5030	5030		99.013	10.836	1				19880	2006	12549	12606	20175	20175					0.055808241263775926
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7958374023438	2	523.795663	1045.57677	1.6255	0.00085143	-0.97588	-0.00051116	0.64963	0.00034027	523.7950871524391	19.039	0.26645	19.039	18.929	19.196	0					8	5	2	0	0	0	0.029571	1	5822	5822		109.44	39.811	1	1952400			19881	2006	12549	12606	20176	20176					0.055808241263775926
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7959594726562	2	523.795663	1045.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.041	1	19.041	18.541	19.541	0								0	0	0	0.00049573	1	5813	5813		138.06	5.3045	1				19882	2006	12549	12606	20177	20177					0.055808241263775926
KEKVTQKF	8	Unmodified	_KEKVTQKF_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5340576171875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.846	1	50.846	50.346	51.346	0								0	0	0	1.7419	1	15250	15250		16.473	2.336	1				19883	3562	12550	12607	20178	20178					0.07810333339955378
KEKWDDAQQ	9	Unmodified	_KEKWDDAQQ_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.274658203125	2	574.272552	1146.53055	3.3412	0.0019188	-0.52542	-0.00030173	2.8158	0.001617	574.2724233472325	19.069	0.2655	19.069	18.863	19.129	0					17	5	4	0	0	0	0.10506	1	5819	5819		82.241	20.133	1	749900			19884	3233	12551	12608	20179	20179					-0.0368524077573511
KEKYEKDIAA	10	Unmodified	_KEKYEKDIAA_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENST00000502313.1_1_5:77940194-77940227:-|nuORF;ENST00000522557.1_1_20:56063450-56063633:-|nuORF;ENSG00000164104|ENST00000296503|HMGB2	ENSG00000189403|ENST00000341423|HMGB1;ENSG00000164104|ENST00000296503|HMGB2	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	597.8219604492188	2	597.821878	1193.6292	0.13684	8.1806E-05	0.12914	7.72E-05	0.26598	0.00015901	597.8219125795497	18.042	0.081326	18.042	17.988	18.069	0					6	2	3	0	0	0	0.67464	1	4434	4434		25.126	1.6033	1	51509			19885	7319;5654	12552	12609	20180	20180					0.040133624693453385
KEKYEKDIAA	10	Unmodified	_KEKYEKDIAA_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENST00000502313.1_1_5:77940194-77940227:-|nuORF;ENST00000522557.1_1_20:56063450-56063633:-|nuORF;ENSG00000164104|ENST00000296503|HMGB2	ENSG00000189403|ENST00000341423|HMGB1;ENSG00000164104|ENST00000296503|HMGB2	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.822509765625	2	597.821878	1193.6292	-0.56432	-0.00033736	1.091	0.00065225	0.52673	0.00031489	597.8226783380737	18.069	0.14408	18.069	17.989	18.133	0					8	4	2	0	0	0	0.42408	1	4667	4667		53.597	7.1401	1	167070			19886	7319;5654	12552	12609	20181	20181					0.040133624693453385
KEKYEKDIAA	10	Unmodified	_KEKYEKDIAA_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENST00000502313.1_1_5:77940194-77940227:-|nuORF;ENST00000522557.1_1_20:56063450-56063633:-|nuORF;ENSG00000164104|ENST00000296503|HMGB2	ENSG00000189403|ENST00000341423|HMGB1;ENSG00000164104|ENST00000296503|HMGB2	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.88372802734375	3	398.883677	1193.6292	0.73531	0.0002933	-0.69056	-0.00027545	0.044754	1.7852E-05	398.88343943837907	18.301	0.26906	18.301	18.241	18.51	0					12	5	3	0	0	0	0.58189	1	5609	5609		48.602	20.958	1	1633700			19887	7319;5654	12552	12609	20182	20182					0.040133624693453385
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	647.8302001953125	2	647.8299	1293.64525	1.6694	0.0010815	-1.7791	-0.0011526	-0.10976	-7.1108E-05	647.8288449493334	28.122	0.13269	28.122	28.065	28.197	0					7	4	2	0	0	0	0.3029	1	8760	8760		66.92	20.463	1	42765			19888	1647;1916	12553	12610	20183	20183					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	647.82958984375	2	647.8299	1293.64525	0.22567	0.0001462	-0.24166	-0.00015656	-0.01599	-1.0359E-05	647.8296283830671	28.121	0.33676	28.121	28.031	28.368	0					30	11	4	0	0	0	0.055558	1	8735	8735		107.45	5.9951	1	975030			19889	1647;1916	12553	12610	20184	20184					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	647.8297729492188	2	647.8299	1293.64525	0.34461	0.00022325	-0.37966	-0.00024596	-0.035051	-2.2707E-05	647.8295732832851	28.371	0.8492	28.371	28.238	29.087	0					53	21	5	0	0	0	0.00034343	1	10002	10002		188.91	62.67	1	7300900			19890	1647;1916	12553	12610	20185	20185					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	647.8300170898438	2	647.8299	1293.64525	-0.81181	-0.00052592	0.74301	0.00048134	-0.068802	-4.4572E-05	647.8302379383205	28.155	0.2266	28.155	28.074	28.3	0					18	8	3	0	0	0	0.03057	1	9030	9030		117.71	41.536	1	303680			19891	1647;1916	12553	12610	20186	20186					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	647.8292236328125	2	647.8299	1293.64525	1.1736	0.00076032	-0.69383	-0.00044948	0.47981	0.00031083	647.8292226868941	28.147	0.14358	28.147	28.09	28.234	0					10	5	2	0	0	0	0.24329	1	9034	9034		74.165	10.631	1	267380			19892	1647;1916	12553	12610	20187	20187					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	647.8300170898438	2	647.8299	1293.64525	-0.66055	-0.00042792	0.91126	0.00059034	0.25071	0.00016242	647.8304359282714	28.407	0.45369	28.407	28.308	28.762	0					21	9	4	0	0	0	0.0015876	1	10390	10390		176.6	31.443	1	1478900			19893	1647;1916	12553	12610	20188	20188					0.010170239155968375
KEKYIIIE	8	Unmodified	_KEKYIIIE_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.3086547851562	2	518.307875	1034.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.38	1	17.38	16.88	17.88	0								0	0	0	1.7419	1	4321	4321		1.4648	0	1				19894	22900	12554	12611	20189	20189					0.08528084279919312
KEKYTAMMKK	10	Unmodified	_KEKYTAMMKK_					0	0	0			REV__ENST00000485092.5_1_1:17345378-17349237:-|nuORF	REV__ENST00000485092.5_1_1:17345378-17349237:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	629.33837890625	2	629.338326	1256.6621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.831	1	24.831	24.331	25.331	0								0	0	0	0.40315	1	7804	7804		18.262	0	1		+		19895	14179	12555	12612	20190	20190					0.04403529996170619
KELAERVAV	9	Unmodified	_KELAERVAV_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8008117675781	2	507.800749	1013.58694	0.88638	0.0004501	-1.0098	-0.00051278	-0.12342	-6.2672E-05	507.80026056189695	30.953	0.18182	30.953	30.835	31.017	0					8	4	3	0	0	0	0.27249	1	11233	11233		52.937	1.744	1	165210	+		19896	21018	12556	12613	20191	20191					0.08069431851617992
KELAFFANAL	10	Unmodified	_KELAFFANAL_					0	0	0		ENST00000484575.1_1_2:209101805-209104899:-|nuORF;ENSG00000138413|ENST00000345146|IDH1	ENST00000484575.1_1_2:209101805-209104899:-|nuORF	ENST00000484575.1_1_2:209101805-209104899:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.3128662109375	2	562.310949	1122.60735	3.4703	0.0019514	-0.29084	-0.00016354	3.1795	0.0017879	562.310923848998	32.395	0.62191	32.395	32.236	32.858	0					27	12	4	0	0	0	0.41055	1	12196	12196		51.193	14.746	1	2341600			19897	4257	12557	12614	20192	20192					0.05094602511417179
KELDEFNKK	9	Unmodified	_KELDEFNKK_					0	0	0			REV__NEXN|p.N590Tfs*5|1|0.2|ENSG00000162614|chr1:77942566-77942566|A/-|frameshift_variant	REV__NEXN|p.N590Tfs*5|1|0.2|ENSG00000162614|chr1:77942566-77942566|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.8092651367188	2	575.808771	1149.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.407	1	30.407	29.907	30.907	0								0	0	0	0.338	1	11362	11362		27.047	2.5281	1		+		19898	15824	12558	12615	20193	20193					0.034170932978668134
KELEFLKK	8	Unmodified	_KELEFLKK_					0	0	0		ENST00000463634.6_1_6:4041126-4056780:+|nuORF;PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant;PRPF4B|p.K780Nfs*13|4|0.31|ENSG00000112739|chr6:4052741-4052741|A/-|frameshift_variant;ENSG00000112739|ENST00000337659|PRPF4B	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.8160400390625	2	517.815867	1033.61718	0.048824	2.5282E-05	0.1598	8.2746E-05	0.20862	0.00010803	517.8158514146593	32.418	0.21191	32.418	32.331	32.543	0					13	5	3	0	0	0	0.29	1	11907	11907		85.862	0	1	358290			19899	2758	12559	12616	20194	20194					0.10171790516801593
KELEGKINSL	10	Unmodified	_KELEGKINSL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;GCC2|p.L712Cfs*16|1|0.49|ENSG00000135968|chr2:108471458-108471458|T/-|frameshift_variant	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.8251342773438	2	565.824421	1129.63429	1.7712	0.0010022	-0.6476	-0.00036643	1.1236	0.00063578	565.8241716599654	26.589	0.23418	26.589	26.494	26.729	0					10	5	3	0	0	0	0.24545	1	9205	9205		70.399	0	1	280480			19900	4042	12560	12617	20195	20195					0.0746566633195016
KELEGKINSL	10	Unmodified	_KELEGKINSL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;GCC2|p.L712Cfs*16|1|0.49|ENSG00000135968|chr2:108471458-108471458|T/-|frameshift_variant	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.8250122070312	2	565.824421	1129.63429	0.13623	7.7085E-05	0.85211	0.00048214	0.98834	0.00055923	565.8248134506961	26.331	0.17816	26.331	26.238	26.416	0					8	5	2	0	0	0	0.16365	1	8271	8271		91.265	18.386	1	165020			19901	4042	12560	12617	20196	20196					0.0746566633195016
KELEITKM	8	Unmodified	_KELEITKM_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant;GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant;GOLGB1|p.E1174Gfs*19|1|0.24|ENSG00000173230|chr3:121696989-121696990|-/T|frameshift_variant;GOLGB1|p.E1375Vfs*20|1|0.02|ENSG00000173230|chr3:121696386-121696387|-/AACTTAGTGAGAAAGAAGCAGCTCTCACT|frameshift_variant;GOLGB1|p.E1375Sfs*20|1|0.04|ENSG00000173230|chr3:121696385-121696386|-/TGGA|frameshift_variant;GOLGB1|p.S1501Vfs*38|1|0.2|ENSG00000173230|chr3:121696007-121696007|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2782287597656	2	496.27826	990.541968	0.12448	6.1779E-05	-0.89409	-0.00044372	-0.76961	-0.00038194	496.2781439052447	26.939	0.15982	26.939	26.866	27.026	0					5	4	2	0	0	0	0.51384	1	8760	8760		58.782	14.665	1	75265			19902	6416	12561	12618	20197	20197					0.046318649940758405
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7830200195312	2	534.782222	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.675	1	18.675	18.175	19.175	0								0	0	0	0.043554	1	4686	4686		89.029	23.563	1				19903	5385	12562	12619	20198	20198					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7824096679688	2	534.782222	1067.54989	2.2392	0.0011975	-1.2136	-0.00064901	1.0256	0.00054848	534.7816629532883	18.969	0.2859	18.969	18.896	19.182	0					18	7	4	0	0	0	0.24169	1	5671	5671		56.632	7.0962	1	3980000			19904	5385	12562	12619	20199	20199					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7826538085938	2	534.782222	1067.54989	2.09	0.0011177	-1.3549	-0.00072456	0.7351	0.00039312	534.7816920722312	18.739	0.10423	18.739	18.687	18.792	0					4	2	2	0	0	0	0.19891	1	4960	4960		61.765	12.229	1	122310			19905	5385	12562	12619	20200	20200					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7830200195312	2	534.782222	1067.54989	0.70859	0.00037894	-0.0086172	-4.6083E-06	0.69998	0.00037434	534.7825371747358	18.906	0.25256	18.906	18.811	19.063	0					12	5	4	0	0	0	0.070005	1	5758	5758		88.177	36.841	1	1461400			19906	5385	12562	12619	20201	20201					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7825317382812	2	534.782222	1067.54989	1.8561	0.00099263	-1.2052	-0.00064451	0.65094	0.00034811	534.7816279067762	18.889	0.24715	18.889	18.8	19.047	0					12	5	4	0	0	0	0.035106	1	5749	5749		104.01	18.853	1	4812000			19907	5385	12562	12619	20202	20202					0.01881715515196447
KELELVHR	8	Unmodified	_KELELVHR_					0	0	0			REV__RAB11FIP3|p.R472H|1|0.13|ENSG00000090565|chr16:505543-505543|G/A|missense_variant	REV__RAB11FIP3|p.R472H|1|0.13|ENSG00000090565|chr16:505543-505543|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.3004760742188	2	512.300916	1022.58728	-0.12185	-6.2422E-05	-0.85687	-0.00043898	-0.97872	-0.0005014	512.3007535550443	14.248	0.10542	14.248	14.177	14.282	0					6	4	2	0	0	0	0.53424	1	2917	2917		37.159	14.117	1	79682	+		19908	21437	12563	12620	20203	20203					0.07688851571481337
KELESVSSF	9	Unmodified	_KELESVSSF_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3;MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant;MTMR3|p.L605*|2|0.34|ENSG00000100330|chr22:30018059-30018059|C/-|frameshift_variant	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2613525390625	2	513.261122	1024.50769	-0.46699	-0.00023969	0.29648	0.00015217	-0.17051	-8.7515E-05	513.2614194798642	33.212	0.21925	33.212	33.124	33.344	0					8	5	2	0	0	0	0.085655	1	12705	12705		82.75	26.029	1	121540			19909	2005	12564	12621	20204	20204					-0.003582598931643588
KELGITAL	8	Unmodified	_KELGITAL_					0	0	0		ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.7603454589844	2	422.760561	843.506569	-0.20681	-8.743E-05	-0.2946	-0.00012454	-0.5014	-0.00021197	422.7604163249626	37.342	0.26714	37.342	37.229	37.496	0					29	14	3	0	0	0	0.32597	1	12220	12220		79.713	0.26157	1	442510			19910	5707	12565	12622	20205	20205					0.07855570528545286
KELGITAL	8	Unmodified	_KELGITAL_					0	0	0		ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7603454589844	2	422.760561	843.506569	-0.85552	-0.00036168	0.52999	0.00022406	-0.32553	-0.00013762	422.7607422869364	37.636	0.36556	37.636	37.517	37.882	0					31	11	4	0	0	0	0.24328	1	14270	14270		113.41	10.638	1	1816300			19911	5707	12565	12622	20206	20206					0.07855570528545286
KELGITAL	8	Unmodified	_KELGITAL_					0	0	0		ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.7602844238281	2	422.760561	843.506569	-0.95891	-0.00040539	0.49168	0.00020786	-0.46723	-0.00019753	422.7607311497848	37.373	0.24762	37.373	37.277	37.524	0					29	13	3	0	0	0	0.53424	1	12638	12638		56.721	5.3856	1	512490			19912	5707	12565	12622	20207	20207					0.07855570528545286
KELGLQVPA	9	Unmodified	_KELGLQVPA_					0	0	0		AluSx1_dup108546|chr19:48960184-48960360:-|1.1583690759143794|0.0026454172374457|8.77|474.0|10|1|anti-sense	AluSx1_dup108546|chr19:48960184-48960360:-|1.1583690759143794|0.0026454172374457|8.77|474.0|10|1|anti-sense	AluSx1_dup108546|chr19:48960184-48960360:-|1.1583690759143794|0.0026454172374457|8.77|474.0|10|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.78436279296875	2	477.784567	953.554582	0.64702	0.00030914	-0.85634	-0.00040915	-0.20932	-0.00010001	477.7841480071153	23.053	0.36824	23.053	22.944	23.312	0					16	7	3	0	0	0	0.099922	1	7876	7876		79.451	6.5718	1	6463500			19913	133	12566	12623	20208	20208					0.07594644448602139
KELGPHSSKT	10	Unmodified	_KELGPHSSKT_					0	0	0		CAPN2|p.Y66H|1|0.1|ENSG00000162909|chr1:223712836-223712836|T/C|missense_variant	CAPN2|p.Y66H|1|0.1|ENSG00000162909|chr1:223712836-223712836|T/C|missense_variant	CAPN2|p.Y66H|1|0.1|ENSG00000162909|chr1:223712836-223712836|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.296142578125	2	542.293288	1082.57202	4.8475	0.0026287	0.46957	0.00025464	5.317	0.0028834	542.2934815282143	36.457	0.18316	36.457	36.401	36.584	0					18	10	2	0	0	0	0.46128	1	12343	12343		49.536	0.094497	1	101420			19914	368	12567	12624	20209	20209					0.03403939983604687
KELGRRNK	8	Unmodified	_KELGRRNK_					0	0	0			REV__ENST00000499203.6_1_5:139486000-139486039:-|nuORF	REV__ENST00000499203.6_1_5:139486000-139486039:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.80548095703125	2	500.804157	999.593761	2.9228	0.0014637	-2.4382	-0.001221	0.48459	0.00024268	500.8040372430443	25.674	0.80095	25.674	25.481	26.282	0					37	14	4	0	0	0	0.24622	1	8991	8991		108.09	14.081	1	4702400	+		19915	19803	12568	12625	20210	20210					0.09394789522843894
KELGSSTNAL	10	Unmodified	_KELGSSTNAL_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2720947265625	2	510.272021	1018.52949	-0.010216	-5.2132E-06	-0.034911	-1.7814E-05	-0.045127	-2.3027E-05	510.2721138326374	24.967	0.12763	24.967	24.891	25.019	0					8	3	3	0	0	0	0.55031	1	8481	8481		39.873	4.2549	1	345550			19916	3444	12569	12626	20211	20211					0.020965448553852184
KELGSSTNAL	10	Unmodified	_KELGSSTNAL_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2720642089844	2	510.272021	1018.52949	-0.41965	-0.00021413	0.39816	0.00020317	-0.021487	-1.0964E-05	510.2722478757487	24.932	0.16436	24.932	24.826	24.991	0					6	3	2	0	0	0	0.1998	1	8796	8796		79.489	22.857	1	483630			19917	3444	12569	12626	20212	20212					0.020965448553852184
KELGVGIAL	9	Unmodified	_KELGVGIAL_					0	0	0		ENSG00000164687|ENST00000297258|FABP5;ENST00000477993.1_1_7:152139663-152139723:+|nuORF	ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2820129394531	2	450.28166	898.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.377	1	41.377	40.877	41.877	0								0	0	0	0.099216	1	16267	16267		71.877	18.526	1				19918	5718	12570	12627	20213	20213					0.09543545936935516
KELHIQGNRL	10	Unmodified	_KELHIQGNRL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.2351379394531	3	403.235045	1206.6833	-0.44741	-0.00018041	0.48978	0.0001975	0.04237	1.7085E-05	403.23523830816583	22.51	0.31169	22.51	22.414	22.726	0					13	7	2	0	0	0	0.35046	1	7332	7332		61.691	16.669	1	721640			19919	4836	12571	12628	20214	20214					0.08822999411563615
KELHPFDL	8	Unmodified	_KELHPFDL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7691650390625	2	499.768917	997.523281	0.66845	0.00033407	-0.33798	-0.00016891	0.33047	0.00016516	499.76879408142264	31.266	0.26111	31.266	31.124	31.385	0					11	6	2	0	0	0	0.68432	1	11371	11371		35.618	1.4457	1	240960			19920	1272	12572	12629	20215	20215					0.02442071414509428
KELIDHQL	8	Unmodified	_KELIDHQL_					0	0	0		ENST00000493152.6_1_13:48510839-48517485:-|nuORF	ENST00000493152.6_1_13:48510839-48517485:-|nuORF	ENST00000493152.6_1_13:48510839-48517485:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2793884277344	2	498.279649	994.544745	0.21974	0.00010949	-0.96518	-0.00048093	-0.74544	-0.00037144	498.2791988729959	24.157	0.13553	24.157	24.064	24.199	0					7	4	2	0	0	0	0.24806	1	7090	7090		104.75	0	1	82627			19921	10087	12573	12630	20216	20216					0.04725456443236453
KELIDHQL	8	Unmodified	_KELIDHQL_					0	0	0		ENST00000493152.6_1_13:48510839-48517485:-|nuORF	ENST00000493152.6_1_13:48510839-48517485:-|nuORF	ENST00000493152.6_1_13:48510839-48517485:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.28094482421875	2	498.279649	994.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.183	1	24.183	23.683	24.683	0								0	0	0	1.7419	1	7367	7367		47.96	3.5823	1				19922	10087	12573	12630	20217	20217					0.04725456443236453
KELIEKELL	9	Unmodified	_KELIEKELL_					0	0	0			REV__ENSG00000114124|ENST00000682958|GRK7	REV__ENSG00000114124|ENST00000682958|GRK7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.22760009765625	3	372.228785	1113.66453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.372	1	13.372	12.872	13.872	0								0	0	0	0.33029	1	3030	3030		29.17	3.596	1		+		19923	14066	12574	12631	20218	20218					0.11224024997136439
KELILECQ	8	Unmodified	_KELILECQ_					0	0	0			REV__MCM9|p.R822Gfs*2|1|0.5|ENSG00000111877|chr6:118815792-118815792|T/-|frameshift_variant	REV__MCM9|p.R822Gfs*2|1|0.5|ENSG00000111877|chr6:118815792-118815792|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.26422119140625	2	488.26261	974.510668	2.5843	0.0012618	0.69928	0.00034143	3.2836	0.0016032	488.2629258910772	12.765	0.37224	12.765	12.676	13.049	0					13	8	2	0	0	0	0.41701	1	2808	2808		68.787	0	1	3798500	+		19924	13983	12575	12632	20219	20219					0.022392919599724337
KELITEKM	8	Unmodified	_KELITEKM_					0	0	0		ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.277587890625	2	496.27826	990.541968	-1.197	-0.00059402	0.3712	0.00018422	-0.82576	-0.00040981	496.27858175174697	26.869	0.14655	26.869	26.794	26.941	0					8	5	2	0	0	0	0.5535	1	8507	8507		54.776	5.3348	1	77208			19925	6648	12576	12633	20220	20220					0.04631864994064472
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	REV__DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.3463134765625	2	575.347532	1148.68051	0.27127	0.00015607	-2.4102	-0.0013867	-2.1389	-0.0012306	575.3464463386833	54.74	0.067116	54.74	54.707	54.774	0					6	4	2	0	0	0	0.74461	1	16569	16569		14.137	0.68308	1	35514	+		19926	12709	12577	12634	20221	20221					0.11211731234061517
KELKVENP	8	Unmodified	_KELKVENP_					0	0	0		tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7735900878906	2	478.7742	955.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.855	1	16.855	16.355	17.355	0								0	0	0	1.7419	1	4119	4119		23.042	0	1				19927	22691	12578	12635	20222	20222					0.054300540689382615
KELLQKEL	8	Unmodified	_KELLQKEL_					0	0	0		ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.8053283691406	2	500.8055	999.596446	-0.58925	-0.0002951	-2.1799	-0.0010917	-2.7691	-0.0013868	500.80565787955277	25.783	0.49767	25.783	25.569	26.067	0					22	8	4	0	0	0	0.091607	1	9153	9153		185.72	0	1	2168100			19928	7229	12579	12636	20223	20223					0.09663200137140393
KELNGVIAKE	10	Unmodified	_KELNGVIAKE_					0	0	0			REV__ENSG00000155749|ENST00000392257|FLACC1	REV__ENSG00000155749|ENST00000392257|FLACC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3461303710938	2	550.819138	1099.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.051	1	14.051	13.551	14.551	0								0	0	0	0.37293	1	3340	3340		38.754	0	1		+		19929	15606	12580	12637	20224	20224					0.07789683677492576
KELPAYNLLK	10	Unmodified	_KELPAYNLLK_					0	0	0			REV__ENSG00000177700|ENST00000322028|POLR2L	REV__ENSG00000177700|ENST00000322028|POLR2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	595.3536987304688	2	594.852981	1187.69141	1.5378	0.00091477	-4.1552	-0.0024717	-2.6173	-0.0015569	594.8499440537767	27.949	0.084932	27.949	27.882	27.967	0					5	3	2	0	0	0	0.58189	1	8676	8676		36.447	1.2685	1	40077	+		19930	16708	12581	12638	20225	20225					0.10507133608325603
KELPKFHG	8	Unmodified	_KELPKFHG_					0	0	0			REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2713928222656	2	478.271627	954.528701	2.2475	0.0010749	-1.834	-0.00087713	0.4135	0.00019776	478.270926601877	32.728	1.0202	32.728	31.984	33.004	0					32	20	2	0	0	0	0.66372	1	12274	12274		38.806	1.647	1	769960	+		19931	15626	12582	12639	20226	20226					0.0496179499699565
KELQQLQEL	9	Unmodified	_KELQQLQEL_					0	0	0			REV__GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant	REV__GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.817138671875	2	564.816596	1127.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.51	1	30.51	30.01	31.01	0								0	0	0	0.10319	1	9729	9729		70.816	7.2824	1		+		19932	17468	12583	12640	20227	20227					0.059933798148904316
KELQTLHNL	9	Unmodified	_KELQTLHNL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.3125610351562	2	548.31148	1094.60841	0.5152	0.00028249	0.80405	0.00044087	1.3192	0.00072335	548.3120771890515	26.86	0.2126	26.86	26.756	26.968	0					8	4	3	0	0	0	0.34452	1	9559	9559		46.457	11.305	1	175090			19933	6256	12584	12641	20228	20228					0.06488816880323611
KELRKKSYEIA	11	Unmodified	_KELRKKSYEIA_					0	0	0			REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	682.8963012695312	2	682.898451	1363.78235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.892	1	38.892	38.392	39.392	0								0	0	0	0.41946	1	13095	13095		32.751	2.4328	1		+		19934	21789	12585	12642	20229	20229					0.11500977585819783
KELRTELE	8	Unmodified	_KELRTELE_					0	0	0			REV__ENST00000576628.1_1_17:7240053-7245794:+|nuORF	REV__ENST00000576628.1_1_17:7240053-7245794:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2825012207031	2	509.282389	1016.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.996	1	15.996	15.496	16.496	0								0	0	0	1.7419	1	4486	4486		66.429	0	1		+		19935	13199	12586	12643	20230	20230					0.042611352350377274
KELRYPGVY	9	Unmodified	_KELRYPGVY_					0	0	0			REV__BRSK2|p.T24M|1|0.43|ENSG00000174672|chr11:1390355-1390355|C/T|missense_variant	REV__BRSK2|p.T24M|1|0.43|ENSG00000174672|chr11:1390355-1390355|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.8089599609375	2	562.808574	1123.60259	0.13103	7.3744E-05	0.64637	0.00036378	0.7774	0.00043752	562.8088584543807	29.408	0.13304	29.408	29.33	29.463	0					9	5	2	0	0	0	0.3269	1	9577	9577		58.782	10.866	1	69234	+		19936	12300	12587	12644	20231	20231					0.04573718368669688
KELSDAVNVR	10	Unmodified	_KELSDAVNVR_					0	0	0		nc|ENSG00000106052|Q86VP1-3|TAX1BP1;nc|ENSG00000106052|Q86VP1-4|TAX1BP1;nc|ENSG00000106052|Q86VP1-2|TAX1BP1;ENSG00000106052|ENST00000396319|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.8091430664062	2	565.811845	1129.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.884	1	17.884	17.384	18.384	0								0	0	0	0.18965	1	4573	4573		65.465	4.4934	1				19937	2419	12588	12645	20232	20232					0.04951611529349975
KELSSIGLL	9	Unmodified	_KELSSIGLL_					0	0	0			REV__ENST00000582429.5_3_17:80398119-80400257:+|nuORF	REV__ENST00000582429.5_3_17:80398119-80400257:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.29193115234375	2	480.292225	958.569897	0.032308	1.5517E-05	-0.49065	-0.00023566	-0.45835	-0.00022014	480.2919952047766	24.387	0.17382	24.387	24.309	24.483	0					9	5	2	0	0	0	0.39215	1	7205	7205		42.396	0	1	85209	+		19938	16327	12589	12646	20233	20233					0.08895511245816579
KELTEVHRC	9	Unmodified	_KELTEVHRC_					0	0	0			REV__ENSG00000136694|ENST00000259211|IL36A	REV__ENSG00000136694|ENST00000259211|IL36A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.78857421875	2	557.787315	1113.56008	1.2945	0.00072206	0.54068	0.00030158	1.8352	0.0010236	557.7877018363093	15.438	0.14288	15.438	15.374	15.517	0					15	6	3	0	0	0	0.61124	1	3349	3349		13.454	0	1	838640	+		19939	14873	12590	12647	20234	20234					0.007839999687803356
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.80523681640625	2	494.8055	987.596446	-0.017675	-8.7455E-06	0.04708	2.3296E-05	0.029406	1.455E-05	494.8054370587336	27.502	0.16196	27.502	27.432	27.594	0					13	5	3	0	0	0	0.11411	1	8491	8491		76.17	23.233	1	250900			19940	7511	12591	12648	20235	20235					0.10215200137145075
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.8055419921875	2	494.8055	987.596446	0.74955	0.00037088	-0.77857	-0.00038524	-0.029014	-1.4356E-05	494.80507742957656	27.797	0.18958	27.797	27.706	27.895	0					14	4	4	0	0	0	0.085309	1	9761	9761		82.831	15.869	1	1945700			19941	7511	12591	12648	20236	20236					0.10215200137145075
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.80560302734375	2	494.8055	987.596446	-1.2512	-0.00061911	0.97255	0.00048122	-0.27867	-0.00013789	494.80588966785575	27.573	0.2985	27.573	27.442	27.74	0					34	10	5	0	0	0	0.015992	1	8770	8770		128.6	32.787	1	684500			19942	7511	12591	12648	20237	20237					0.10215200137145075
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.8046875	2	494.8055	987.596446	0.070512	3.489E-05	0.098797	4.8885E-05	0.16931	8.3775E-05	494.8054834714291	27.597	0.21867	27.597	27.494	27.713	0					14	5	3	0	0	0	0.12278	1	9036	9036		74.165	19.389	1	270300			19943	7511	12591	12648	20238	20238					0.10215200137145075
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.80517578125	2	494.8055	987.596446	-2.4763	-0.0012253	2.5453	0.0012594	0.069005	3.4144E-05	494.806803323822	27.598	0.26021	27.598	27.483	27.743	0					10	6	2	0	0	0	0.026656	1	9043	9043		112.3	37.252	1	248720			19944	7511	12591	12648	20239	20239					0.10215200137145075
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.80535888671875	2	494.8055	987.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.717	1	27.717	27.217	28.217	0								0	0	0	0.0016267	1	9953	9953		187.5	64.565	1				19945	7511	12591	12648	20240	20240					0.10215200137145075
KELTLVKQ	8	Unmodified	_KELTLVKQ_					0	0	0			REV__ENST00000552049.5_1_12:52404317-52404936:+|nuORF	REV__ENST00000552049.5_1_12:52404317-52404936:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7999572753906	2	479.800217	957.585882	-0.20613	-9.89E-05	-0.11672	-5.6004E-05	-0.32285	-0.0001549	479.8001693478104	35.414	0.49534	35.414	35.295	35.79	0					33	13	4	0	0	0	0.22071	1	13266	13266		129.68	0	1	2915700	+		19946	20206	12592	12649	20241	20241					0.1053921748269886
KELTLVKQ	8	Unmodified	_KELTLVKQ_					0	0	0			REV__ENST00000552049.5_1_12:52404317-52404936:+|nuORF	REV__ENST00000552049.5_1_12:52404317-52404936:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.79962158203125	2	479.800217	957.585882	-0.30884	-0.00014818	0.28379	0.00013616	-0.025052	-1.202E-05	479.80042550058454	35.157	0.30656	35.157	35.082	35.388	0					19	10	2	0	0	0	0.23898	1	12513	12513		116.9	8.8161	1	577630	+		19947	20206	12592	12649	20242	20242					0.1053921748269886
KELVLQTV	8	Unmodified	_KELVLQTV_					0	0	0		nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2869567871094	2	465.286943	928.559333	-0.1379	-6.4165E-05	-0.27649	-0.00012865	-0.41439	-0.00019281	465.28678269220643	32.534	0.66383	32.534	32.372	33.036	0					25	16	3	0	0	0	0.46013	1	12353	12353		64.207	0	1	1265900			19948	11664	12593	12650	20243	20243					0.09219528591358994
KELVTKLS	8	Unmodified	_KELVTKLS_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2871398925781	2	459.286943	916.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.924	1	26.924	26.424	27.424	0								0	0	0	1.7419	1	9347	9347		49.442	0	1		+		19949	15479	12594	12651	20244	20244					0.09771528591375045
KELVTQQL	8	Unmodified	_KELVTQQL_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.78131103515625	2	479.782025	957.549496	0.023879	1.1456E-05	-0.50254	-0.00024111	-0.47867	-0.00022966	479.78181742195477	29.374	0.2113	29.374	29.286	29.497	0					10	7	2	0	0	0	0.25987	1	9260	9260		95.815	2.6197	1	60830			19950	7307	12595	12652	20245	20245					0.06902340586009359
KELWMALIKK	10	Unmodified	_KELWMALIKK_					0	0	0		ENST00000466992.1_1_6:109871214-109940313:-|nuORF;nc|ENSG00000155085|Q5TCS8-1|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;AK9|p.R1209Gfs*39|2|0.33|ENSG00000155085|chr6:109529019-109529019|T/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-6|AK9;ENSG00000155085|ENST00000424296|AK9	ENST00000466992.1_1_6:109871214-109940313:-|nuORF	ENST00000466992.1_1_6:109871214-109940313:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	630.3819580078125	2	630.380852	1258.74715	1.1933	0.00075225	0.71019	0.00044769	1.9035	0.0011999	630.3812518044435	23.521	0.2188	23.521	23.386	23.604	0					14	5	4	0	0	0	0.01554	1	7791	7791		129.42	129.42	1	622240			19951	106	12596	12653	20246	20246					0.12812643524262057
KELYDLRQ	8	Unmodified	_KELYDLRQ_					0	0	0		CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant;ENSG00000140743|ENST00000268383|CDR2	CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant	CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7923583984375	2	532.790381	1063.56621	3.4002	0.0018116	-3.6565	-0.0019482	-0.25636	-0.00013659	532.7905423600637	13.283	0.29673	13.283	13.127	13.424	0					14	6	4	0	0	0	0.46905	1	3054	3054		63.306	2.3343	1	1585200			19952	463	12597	12654	20247	20247					0.036968414719467546
KEMAVRIDN	9	Unmodified	_KEMAVRIDN_					0	0	0			REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1	REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.283203125	2	538.281866	1074.54918	0.69319	0.00037313	-0.10511	-5.6579E-05	0.58808	0.00031655	538.2817594190522	13.639	0.35577	13.639	13.524	13.88	0					18	7	3	0	0	0	0.33044	1	3198	3198		47.657	3.1263	1	404840	+		19953	22173	12598	12655	20248	20248					0.014885975944935126
KEMDLASVN	9	Oxidation (M)	_KEM(Oxidation (M))DLASVN_		KEM(1)DLASVN		KEM(110)DLASVN	0	0	1			REV__ENSG00000100941|ENST00000216832|PNN	REV__ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.745361328125	2	511.744782	1021.47501	0.0013274	6.7931E-07	1.1035	0.00056471	1.1048	0.00056539	511.7454621834027	17.536	0.68023	17.536	17.448	18.128	0					34	16	3	0	0	0	0.025517	1	4970	4970		113.41	12.159	1	5352500	+		19954	13578	12599	12656	20249	20249		519			-0.03486790287684016
KEMFIMVQE	9	Unmodified	_KEMFIMVQE_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000481369.1_1_X:53230656-53231176:-|nuORF;ENST00000469599.6_1_Y:21877495-21878275:-|nuORF;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000497100.5_1_X:53227940-53240837:-|nuORF	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.7849731445312	2	577.782853	1153.55115	3.2695	0.0018891	0.074195	4.2869E-05	3.3437	0.0019319	577.7830939494162	18.497	0.51198	18.497	18.19	18.702	0					18	10	4	0	0	0	0.27249	1	5560	5560		52.937	1.744	1	2461200			19955	3458	12600	12657	20250	20250					-0.019481097119296464
KEMHTKLN	8	Unmodified	_KEMHTKLN_					0	0	0			REV__ENSG00000230453|ENST00000684830|ANKRD18B	REV__ENSG00000230453|ENST00000684830|ANKRD18B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.765625	2	500.765852	999.51715	-0.13466	-6.7431E-05	-0.67138	-0.0003362	-0.80603	-0.00040363	500.7657032123079	20.65	0.55832	20.65	20.373	20.931	0					26	12	4	0	0	0	0.26534	1	6427	6427		94.006	0.81096	1	8332600	+		19956	17642	12601	12658	20251	20251					0.01737229911339
KEMHTKLN	8	Unmodified	_KEMHTKLN_					0	0	0			REV__ENSG00000230453|ENST00000684830|ANKRD18B	REV__ENSG00000230453|ENST00000684830|ANKRD18B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7657775878906	2	500.765852	999.51715	-0.5946	-0.00029775	-0.072952	-3.6532E-05	-0.66755	-0.00033428	500.76612445366123	20.553	0.46779	20.553	20.445	20.913	0					24	9	5	0	0	0	0.30437	1	6664	6664		82.305	0	1	10585000	+		19957	17642	12601	12658	20252	20252					0.01737229911339
KEMKQLAETTS	11	Unmodified	_KEMKQLAETTS_					0	0	0			REV__ENST00000578618.5_1_18:5398595-5399237:-|nuORF	REV__ENST00000578618.5_1_18:5398595-5399237:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	633.3245849609375	2	633.323928	1264.6333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.462	1	40.462	39.962	40.962	0								0	0	0	0.44926	1	15945	15945		26.063	4.3776	1		+		19958	20436	12602	12659	20253	20253					0.011570839007163158
KEMKSLKKK	9	Oxidation (M)	_KEM(Oxidation (M))KSLKKK_		KEM(1)KSLKKK		KEM(70)KSLKKK	0	0	1		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.345703125	2	568.347009	1134.67946	-1.2775	-0.00072608	-1.1288	-0.00064155	-2.4063	-0.0013676	568.3462641523937	16.708	0.22275	16.708	16.624	16.846	0					21	7	4	0	0	0	0.1424	1	4011	4011		69.628	69.628	1	1487400			19959	3145	12603	12660	20254	20254		137			0.11751193593477183
KEMQPTHPI	9	Unmodified	_KEMQPTHPI_					0	0	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.779296875	2	540.778959	1079.54336	0.65968	0.00035674	-0.076357	-4.1292E-05	0.58332	0.00031545	540.7789159105247	20.701	0.16784	20.701	20.591	20.759	0					6	3	2	0	0	0	0.12239	1	6632	6632		74.255	24.813	1	131050			19960	5946;5741;3911	12604	12661	20255	20255					0.006774990828262162
KEMTALRRK	9	Unmodified	_KEMTALRRK_					0	0	0		nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.2253723144531	3	378.225492	1131.65465	0.81296	0.00030748	-1.3969	-0.00052835	-0.58396	-0.00022087	378.2250991564374	18.345	0.231	18.345	18.254	18.485	0					12	5	4	0	0	0	0.090954	1	5342	5342		81.525	17.991	1	1412400			19961	5193	12605	12662	20256	20256					0.09408558510767762
KEMTALRRK	9	Unmodified	_KEMTALRRK_					0	0	0		nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.22540283203125	3	378.225492	1131.65465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.298	1	18.298	17.798	18.798	0								0	0	0	0.10319	1	5451	5451		70.816	15.732	1				19962	5193	12605	12662	20257	20257					0.09408558510767762
KEMTALRRK	9	Unmodified	_KEMTALRRK_					0	0	0		nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.2254333496094	3	378.225492	1131.65465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.287	1	18.287	17.787	18.787	0								0	0	0	0.039046	1	5445	5445		91.265	17.424	1				19963	5193	12605	12662	20258	20258					0.09408558510767762
KEMVRNLMVVG	11	Oxidation (M)	_KEM(Oxidation (M))VRNLMVVG_		KEM(0.999)VRNLM(0.001)VVG		KEM(32)VRNLM(-32)VVG	0	0	1			REV__PTPN1|p.G377Efs*27|2|0.27|ENSG00000196396|chr20:50581301-50581301|G/-|frameshift_variant	REV__PTPN1|p.G377Efs*27|2|0.27|ENSG00000196396|chr20:50581301-50581301|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2347717285156	3	431.233547	1290.67881	-0.4656	-0.00020078	2.5395	0.0010951	2.0739	0.00089433	431.23535949222867	19.164	0.91327	19.164	18.946	19.859	0					47	18	4	0	0	0	0.54316	1	5906	5906		41.08	8.0407	2	2628700	+		19964	17247	12606	12663	20259	20259		659			0.04510030882102001
KENAARLKDV	10	Unmodified	_KENAARLKDV_					0	0	0			REV__ENSG00000106665|ENST00000223398|CLIP2	REV__ENSG00000106665|ENST00000223398|CLIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.3284912109375	2	572.327662	1142.64077	0.6165	0.00035284	0.23011	0.0001317	0.84661	0.00048454	572.3277479645323	18.126	0.22615	18.126	18.05	18.277	0					10	5	3	0	0	0	0.39647	1	4670	4670		29.17	0	1	439740	+		19965	13833	12607	12664	20260	20260					0.07515604283321409
KENDMAQSL	9	Unmodified	_KENDMAQSL_					0	0	0		ENSG00000163545|ENST00000367157|NUAK2	ENSG00000163545|ENST00000367157|NUAK2	ENSG00000163545|ENST00000367157|NUAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2424926757812	2	518.242406	1034.47026	0.052147	2.7025E-05	0.2241	0.00011614	0.27624	0.00014316	518.2423769291629	26.711	0.24152	26.711	26.564	26.805	0					11	5	3	0	0	0	0.27123	1	9257	9257		53.089	3.0644	1	422190			19966	5573	12608	12665	20261	20261					-0.04559674430447558
KENDVTAVL	9	Unmodified	_KENDVTAVL_					0	0	0		ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.274658203125	2	494.769114	987.523675	-0.04233	-2.0944E-05	1.5463	0.00076508	1.504	0.00074414	494.7689775269478	33.64	0.4589	33.64	33.358	33.817	0					24	11	3	0	0	0	0.47038	1	12856	12856		35.618	3.6634	1	295270			19967	7901	12609	12666	20262	20262					0.029414463437205995
KENDYSITF	9	Unmodified	_KENDYSITF_					0	0	0			REV__nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	REV__nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7640991210938	2	558.764029	1115.5135	1.4278	0.00079782	-0.0039657	-2.2159E-06	1.4239	0.0007956	558.7639610481729	26.442	0.30742	26.442	26.361	26.668	0					14	10	2	0	0	0	0.098791	1	8025	8025		79.713	16.179	1	187880	+		19968	15989	12610	12667	20263	20263					-0.039631613815572564
KENDYSITF	9	Unmodified	_KENDYSITF_					0	0	0			REV__nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	REV__nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.764892578125	2	558.764029	1115.5135	1.8003	0.0010059	-0.016189	-9.0457E-06	1.7841	0.00099689	558.7639077288904	26.677	0.60501	26.677	26.535	27.14	0					24	14	2	0	0	0	0.16806	1	9221	9221		65.465	10.689	1	1522500	+		19969	15989	12610	12667	20264	20264					-0.039631613815572564
KENGGARL	8	Unmodified	_KENGGARL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7357177734375	2	422.735409	843.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.115	1	15.115	14.615	15.615	0								0	0	0	1.7419	1	3834	3834		94.006	28.203	1				19970	3063	12611	12668	20265	20265					0.028274609234131276
KENGGARL	8	Unmodified	_KENGGARL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7351989746094	2	422.735409	843.456264	-0.21126	-8.9309E-05	-0.15909	-6.7251E-05	-0.37035	-0.00015656	422.73525242143415	15.105	0.16751	15.105	15.045	15.212	0					5	3	2	0	0	0	0.41701	1	4073	4073		68.787	5.4806	1	504050			19971	3063	12611	12668	20266	20266					0.028274609234131276
KENGGARL	8	Unmodified	_KENGGARL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7352600097656	2	422.735409	843.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.097	1	15.097	14.597	15.597	0								0	0	0	1.7419	1	3905	3905		20.947	2.6225	1				19972	3063	12611	12668	20267	20267					0.028274609234131276
KENIKPQIL	9	Unmodified	_KENIKPQIL_					0	0	0		DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;ENSG00000115423|ENST00000389394|DNAH6	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.55780029296875	3	361.557125	1081.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.154	1	27.154	26.654	27.654	0								0	0	0	0.2591	1	8847	8847		42.396	0	1				19973	819	12612	12669	20268	20268					0.1119857791979939
KENKCGNGS	9	Unmodified	_KENKCGNGS_					0	0	0			REV__ENSG00000109929|ENST00000264027|SC5D	REV__ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7142028808594	2	468.713816	935.413079	0.27213	0.00012755	-0.3829	-0.00017947	-0.11077	-5.1918E-05	468.71363188613697	29.209	2.1764	29.209	29.087	31.264	0					146	53	3	0	0	0	0.46194	1	10991	10991		36.447	3.6343	1	21974000	+		19974	13920	12613	12670	20269	20269					-0.057210969161587855
KENKIAKKK	9	Unmodified	_KENKIAKKK_					0	0	0		tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8538818359375	2	543.853316	1085.69208	0.34913	0.00018988	0.26459	0.0001439	0.61372	0.00033377	543.8533666775462	16.002	0.39249	16.002	15.926	16.318	0					16	9	2	0	0	0	0.013878	1	4245	4245		116.9	0	1	1078700			19975	23040	12614	12671	20270	20270					0.152659730480309
KENLEKTRHTL	11	Unmodified	_KENLEKTRHTL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.9248962402344	3	456.924647	1367.75211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.898	1	17.898	17.398	18.398	0								0	0	0	0.45674	1	5134	5134		15.921	1.227	1				19976	6669	12615	12672	20271	20271					0.08294618920626817
KENLRKDMER	10	Unmodified	_KENLRKDMER_					0	0	0		ENSG00000188315|ENST00000343010|C3orf62	ENSG00000188315|ENST00000343010|C3orf62	ENSG00000188315|ENST00000343010|C3orf62	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	659.8497924804688	2	659.848435	1317.68232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.725	1	11.725	11.225	12.225	0								0	0	0	0.4201	1	2318	2318		8.2351	0	1				19977	7246	12616	12673	20272	20272					0.03618416980339134
KENLRPMI	8	Unmodified	_KENLRPMI_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7837829589844	2	500.784044	999.553536	-0.59903	-0.00029999	0.10349	5.1825E-05	-0.49554	-0.00024816	500.7841044666468	24.138	0.1678	24.138	24.029	24.196	0					6	3	2	0	0	0	0.51384	1	8419	8419		47.916	10.756	1	558760			19978	2469	12617	12674	20273	20273					0.05374106808051238
KENPVKLK	8	Unmodified	_KENPVKLK_					0	0	0		CCDC30|p.L74P|1|0.26|ENSG00000186409|chr1:42539276-42539276|T/C|missense_variant	CCDC30|p.L74P|1|0.26|ENSG00000186409|chr1:42539276-42539276|T/C|missense_variant	CCDC30|p.L74P|1|0.26|ENSG00000186409|chr1:42539276-42539276|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.3000183105469	2	478.300384	954.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.098	1	12.098	11.598	12.598	0								0	0	0	1.7419	1	2496	2496		133.81	4.13	1				19979	406	12618	12675	20274	20274					0.10710637202566886
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.8137817382812	2	558.813333	1115.61211	1.4287	0.0007984	-0.76987	-0.00043022	0.65888	0.00036819	558.8128799124803	25.34	0.15685	25.34	25.265	25.422	0					12	5	3	0	0	0	0.070005	1	7633	7633		88.177	47.399	1	294580			19980	2285	12619	12676	20275	20275					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.8135375976562	2	558.813333	1115.61211	1.8	0.0010059	-1.7868	-0.00099851	0.013162	7.3551E-06	558.8125254573838	25.647	0.38804	25.647	25.541	25.929	0					23	7	5	0	0	0	3.2654E-05	1	8790	8790		200.16	109.79	1	1685400			19981	2285	12619	12676	20276	20276					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.8135375976562	2	558.813333	1115.61211	0.12168	6.7998E-05	0.6631	0.00037055	0.78479	0.00043855	558.8138481862181	25.397	0.25592	25.397	25.312	25.568	0					20	9	3	0	0	0	0.27249	1	7879	7879		52.937	19.421	1	329530			19982	2285	12619	12676	20277	20277					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.8135986328125	2	558.813333	1115.61211	1.761	0.0009841	-1.6093	-0.00089932	0.1517	8.4773E-05	558.812702547801	25.595	0.26254	25.595	25.492	25.755	0					19	5	5	0	0	0	0.00073892	1	9113	9113		185.55	86.92	1	2233100			19983	2285	12619	12676	20278	20278					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.8145751953125	2	558.813333	1115.61211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.47	1	25.47	24.97	25.97	0								0	0	0	0.04624	1	8104	8104		87.696	34.345	1				19984	2285	12619	12676	20279	20279					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.8135986328125	2	558.813333	1115.61211	1.1116	0.0006212	0.094417	5.2762E-05	1.2061	0.00067396	558.8135004451134	25.435	0.31195	25.435	25.342	25.654	0					10	8	2	0	0	0	0.035062	1	8096	8096		104.06	49.28	1	270040			19985	2285	12619	12676	20280	20280					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8136596679688	2	558.813333	1115.61211	1.3698	0.00076545	-0.77179	-0.00043128	0.598	0.00033417	558.8131282504431	25.573	0.31568	25.573	25.464	25.78	0					15	5	4	0	0	0	0.00073892	1	8957	8957		185.55	92.354	1	1406200			19986	2285	12619	12676	20281	20281					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8137817382812	2	558.813333	1115.61211	1.826	0.0010204	-1.3067	-0.00073023	0.51928	0.00029018	558.8128265716069	25.556	0.40043	25.556	25.448	25.849	0					16	6	4	0	0	0	3.2654E-05	1	8973	8973		200.16	112.4	1	2752500			19987	2285	12619	12676	20282	20282					0.05893163382529565
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8136596679688	2	558.813333	1115.61211	3.4694	0.0019387	-4.1806	-0.0023361	-0.71119	-0.00039743	558.8117050526719	25.539	0.77197	25.539	24.929	25.701	0					32	15	3	0	0	0	0.0025054	1	8968	8968		171.53	75.341	1	1038100			19988	2285	12619	12676	20283	20283					0.05893163382529565
KENSLITQF	9	Unmodified	_KENSLITQF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.2908935546875	2	540.290214	1078.56587	0.96583	0.00052183	-1.855	-0.0010023	-0.88921	-0.00048043	540.289311272029	39.297	0.1413	39.297	39.214	39.355	0					14	8	2	0	0	0	0.28504	1	12759	12759		51.528	0.1923	1	65813			19989	2182	12620	12677	20284	20284					0.029734217520854145
KENSLITQF	9	Unmodified	_KENSLITQF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.290771484375	2	540.290214	1078.56587	-0.022371	-1.2087E-05	-0.35478	-0.00019168	-0.37715	-0.00020377	540.2901409719293	39.375	0.18118	39.375	39.278	39.459	0					15	10	2	0	0	0	0.22823	1	13227	13227		58.246	1.5252	1	71378			19990	2182	12620	12677	20285	20285					0.029734217520854145
KENSLITQF	9	Unmodified	_KENSLITQF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2904052734375	2	540.290214	1078.56587	1.9774	0.0010684	-3.5017	-0.0018919	-1.5243	-0.00082358	540.288576015989	39.582	0.34492	39.582	39.487	39.832	0					25	12	3	0	0	0	0.16806	1	15564	15564		65.465	4.4934	1	576000			19991	2182	12620	12677	20286	20286					0.029734217520854145
KENSPEKFAL	10	Unmodified	_KENSPEKFAL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.809326171875	2	581.808771	1161.60299	0.59415	0.00034568	0.055714	3.2415E-05	0.64986	0.00037809	581.8088222511384	28.58	0.1838	28.58	28.459	28.643	0					15	8	3	0	0	0	0.63851	1	8927	8927		24.519	0	1	69930			19992	1952	12621	12678	20287	20287					0.028650932978507626
KENSPEKFAL	10	Unmodified	_KENSPEKFAL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.8092651367188	2	581.808771	1161.60299	-0.015811	-9.1988E-06	1.2166	0.00070785	1.2008	0.00069865	581.8095328253745	28.843	0.29724	28.843	28.671	28.968	0					16	7	3	0	0	0	0.046394	1	10242	10242		99.013	20.749	1	465250			19993	1952	12621	12678	20288	20288					0.028650932978507626
KENSPEKFAL	10	Unmodified	_KENSPEKFAL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.8090209960938	2	581.808771	1161.60299	-0.33515	-0.00019499	1.0795	0.00062806	0.74434	0.00043307	581.8094144975798	28.833	0.26481	28.833	28.695	28.96	0					12	5	3	0	0	0	0.034064	1	10606	10606		114.89	43.017	1	300800			19994	1952	12621	12678	20289	20289					0.028650932978507626
KEPEINTTL	9	Unmodified	_KEPEINTTL_					0	0	0		ENSG00000165487|ENST00000382374|MICU2;ENST00000480341.5_1_13:22077016-22089705:-|nuORF	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.782958984375	2	522.782222	1043.54989	0.78985	0.00041292	-0.12049	-6.2988E-05	0.66937	0.00034993	522.7822712486327	31.971	0.765	31.971	31.708	32.473	0					56	32	3	0	0	0	0.25761	1	10277	10277		54.722	13.296	1	181230			19995	5803	12622	12679	20290	20290					0.029857155152058112
KEPEINTTL	9	Unmodified	_KEPEINTTL_					0	0	0		ENSG00000165487|ENST00000382374|MICU2;ENST00000480341.5_1_13:22077016-22089705:-|nuORF	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7824096679688	2	522.782222	1043.54989	-0.040183	-2.1007E-05	0.22619	0.00011825	0.18601	9.7241E-05	522.7825981263434	32.171	0.93221	32.171	31.827	32.759	0					59	21	3	0	0	0	0.035106	2	12166	12166;12337		104.01	31.134	1	544140			19996	5803	12622	12679	20291;20292	20291					0.029857155152058112
KEPEINTTL	9	Unmodified	_KEPEINTTL_					0	0	0		ENSG00000165487|ENST00000382374|MICU2;ENST00000480341.5_1_13:22077016-22089705:-|nuORF	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7833862304688	2	522.782222	1043.54989	-1.298	-0.00067856	1.8476	0.00096588	0.54961	0.00028732	522.7833992144145	31.977	0.61497	31.977	31.771	32.386	0					29	18	2	0	0	0	0.18416	1	11050	11050		63.534	12.341	1	93996			19997	5803	12622	12679	20293	20293					0.029857155152058112
KEPEQVNAA	9	Unmodified	_KEPEQVNAA_					0	0	0			REV__ENSG00000160214|ENST00000497547|RRP1	REV__ENSG00000160214|ENST00000497547|RRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.25335693359375	2	493.251089	984.487624	2.7638	0.0013632	2.215	0.0010926	4.9788	0.0024558	493.25211492117273	11.903	0.72963	11.903	11.797	12.526	0					38	21	3	0	0	0	0.25716	1	2374	2374		54.776	1.4249	1	6669000	+		19998	15740	12623	12680	20294	20294					-0.005240108331463489
KEPKEPKT	8	Unmodified	_KEPKEPKT_					0	0	0		CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.L1020*|1|0.09|ENSG00000171316|chr8:60822599-60822599|T/-|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.77386474609375	2	478.7742	955.533846	-0.25784	-0.00012345	-0.79074	-0.00037859	-1.0486	-0.00050203	478.7736339336597	14.256	1.4439	14.256	14.046	15.49	0					68	35	4	0	0	0	0.3049	1	3421	3421		82.241	8.2658	1	1224200			19999	506	12624	12681	20295	20295					0.054300540689382615
KEPLIPIQE	9	Unmodified	_KEPLIPIQE_					0	0	0		nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-2|DYSF	nc|ENSG00000135636|O75923-3|DYSF	nc|ENSG00000135636|O75923-3|DYSF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8094482421875	2	533.810782	1065.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.547	1	13.547	13.047	14.047	0								0	0	0	0.29356	1	3170	3170		36.447	4.9169	1				20000	11537	12625	12682	20296	20296					0.07683182791561194
KEPLMIGGK	9	Unmodified	_KEPLMIGGK_					0	0	0			REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.782958984375	2	486.78097	971.547388	3.4996	0.0017035	0.49971	0.00024325	3.9993	0.0019468	486.7811410942546	12.88	0.073105	12.88	12.842	12.915	0					7	4	2	0	0	0	0.047412	1	2585	2585		96.19	96.19	1	139780	+		20001	14114	12626	12683	20297	20297					0.060475885765413295
KEPMETLK	8	Unmodified	_KEPMETLK_					0	0	0			REV__LRRN3|p.L131M|1|0.19|ENSG00000173114|chr7:111123163-111123163|C/A|missense_variant	REV__LRRN3|p.L131M|1|0.19|ENSG00000173114|chr7:111123163-111123163|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2641296386719	2	488.26261	974.510668	-0.19843	-9.6885E-05	4.0459	0.0019755	3.8475	0.0018786	488.2640722454764	12.496	0.058372	12.496	12.467	12.525	0					6	3	2	0	0	0	0.5676	1	2432	2432		53.351	0.26249	1	66422	+		20002	20849	12627	12684	20298	20298					0.022392919599838024
KEPNQSLLA	9	Unmodified	_KEPNQSLLA_					0	0	0			REV__nc|ENSG00000130830|Q00013-2|MPP1	REV__nc|ENSG00000130830|Q00013-2|MPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.27728271484375	2	500.277106	998.53966	0.15667	7.8377E-05	-0.35763	-0.00017892	-0.20097	-0.00010054	500.2770357048307	16.598	0.23576	16.598	16.516	16.752	0					10	7	2	0	0	0	0.16002	1	3984	3984		66.429	5.4573	1	100160	+		20003	14602	12628	12685	20299	20299					0.040331525806209356
KEPPAPAQ	8	Unmodified	_KEPPAPAQ_					0	0	0		TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant;ENSG00000134851|ENST00000381334|TMEM165;ENST00000514070.1_1_4:56262425-56263321:+|nuORF;TMEM165|p.G171Wfs*3|1|0.09|ENSG00000134851|chr4:55417143-55417144|-/T|frameshift_variant	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	TMEM165|p.L309Wfs*10|1|0.25|ENSG00000134851|chr4:55425397-55425397|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	419.2265930175781	2	419.226885	836.439217	-1.3222	-0.00055432	1.1896	0.00049872	-0.13261	-5.5594E-05	419.2273875736827	24.808	0.23876	24.808	24.734	24.973	0					13	8	3	0	0	0	0.46013	1	7635	7635		64.207	4.089	1	127060			20004	3945	12629	12686	20300	20300					0.014455403176043546
KEPVGFSAIG	10	Unmodified	_KEPVGFSAIG_					0	0	0			REV__nc|ENSG00000002745|Q9UBV4-2|WNT16	REV__nc|ENSG00000002745|Q9UBV4-2|WNT16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7720947265625	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.145	1	16.145	15.645	16.645	0								0	0	0	0.070616	1	4317	4317		74.255	0	1		+		20005	12816	12630	12687	20301	20301					0.03222054068953639
KEPVISNIK	9	Unmodified	_KEPVISNIK_					0	0	0			REV__tr|U7STZ0|U7STZ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01250PE=4SV=1	REV__tr|U7STZ0|U7STZ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01250PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3108520507812	2	514.310949	1026.60735	1.3581	0.00069851	-0.43679	-0.00022465	0.92134	0.00047386	514.31086204087	31.34	0.46142	31.34	31.257	31.719	0					18	10	4	0	0	0	0.41958	1	11800	11800		40.058	7.2458	1	453040	+		20006	21947	12631	12688	20302	20302					0.09510602511409161
KEPVSGPNNR	10	Unmodified	_KEPVSGPNNR_					0	0	0			REV__ENSG00000158286|ENST00000377939|RNF207	REV__ENSG00000158286|ENST00000377939|RNF207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2887573242188	2	549.288537	1096.56252	1.7388	0.00095512	-1.266	-0.00069541	0.47282	0.00025971	549.2877009493113	19.372	0.31479	19.372	19.115	19.43	0					14	6	3	0	0	0	0.50881	1	6125	6125		44.377	2.9506	1	1221400	+		20007	15680	12632	12689	20303	20303					0.018101716980936544
KEPVTPSAL	9	Unmodified	_KEPVTPSAL_					0	0	0		AURKB|p.R30Q|1|0.33|ENSG00000178999|chr17:8207800-8207800|C/T|missense_variant;nc|ENSG00000178999|Q96GD4-3|AURKB;ENST00000584561.1_1_17:8110402-8113858:-|nuORF;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	AURKB|p.R30Q|1|0.33|ENSG00000178999|chr17:8207800-8207800|C/T|missense_variant	AURKB|p.R30Q|1|0.33|ENSG00000178999|chr17:8207800-8207800|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2682800292969	2	471.26875	940.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.338	1	28.338	27.838	28.838	0								0	0	0	0.19847	1	9392	9392		51.193	3.5354	1				20008	264	12633	12690	20304	20304					0.05030651694653443
KEPYDLRV	8	Unmodified	_KEPYDLRV_					0	0	0		ENST00000555098.5_1_14:23468454-23479348:-|nuORF;ENST00000556419.5_1_14:23468454-23479348:-|nuORF	ENST00000555098.5_1_14:23468454-23479348:-|nuORF	ENST00000555098.5_1_14:23468454-23479348:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2777404785156	2	510.279649	1018.54475	-1.8067	-0.00092192	-1.6507	-0.00084233	-3.4574	-0.0017642	510.27891340080447	15.866	0.18153	15.866	15.788	15.97	0					16	7	4	0	0	0	0.41	1	3632	3632		68.787	15.85	1	1200300			20009	10654	12634	12691	20305	20305					0.03621456443238458
KEQCPPLPRS	10	Unmodified	_KEQCPPLPRS_					0	0	0			REV__ENSG00000164659|ENST00000450689|ELAPOR2	REV__ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.8046264648438	2	577.802965	1153.59138	0.84763	0.00048976	1.5725	0.00090862	2.4202	0.0013984	577.8039967083821	16.573	0.13453	16.573	16.498	16.632	0					7	4	2	0	0	0	0.16745	1	3789	3789		83.647	5.3832	1	633770	+		20010	15998	12635	12692	20306	20306					0.020725730028743783
KEQDIYTHL	9	Unmodified	_KEQDIYTHL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant;CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.7929077148438	2	573.793121	1145.57169	0.95158	0.00054601	-0.36221	-0.00020783	0.58938	0.00033818	573.7932888745426	29.257	0.18756	29.257	29.162	29.35	0					6	4	2	0	0	0	0.048471	1	10827	10827		95.815	37.585	1	70736			20011	4119	12636	12693	20307	20307					0.0047252026377009315
KEQDIYTHL	9	Unmodified	_KEQDIYTHL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant;CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.7927856445312	2	573.793121	1145.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.246	1	29.246	28.746	29.746	0								0	0	0	0.27025	1	10692	10692		40.778	6.6056	1				20012	4119	12636	12693	20308	20308					0.0047252026377009315
KEQDVEKEL	9	Unmodified	_KEQDVEKEL_					0	0	0		NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.2906494140625	2	559.290411	1116.56627	-0.45994	-0.00025724	0.16227	9.0758E-05	-0.29766	-0.00016648	559.2905842781213	22.855	0.12383	22.855	22.784	22.908	0					7	4	2	0	0	0	0.10506	1	6788	6788		78.264	14.73	1	67304			20013	1681	12637	12694	20309	20309					0.012647966812892264
KEQELQQTL	9	Unmodified	_KEQELQQTL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.798583984375	2	558.798403	1115.58225	1.2891	0.00072034	-1.0451	-0.000584	0.24399	0.00013634	558.7976021430278	27.844	0.24657	27.844	27.742	27.988	0					20	8	4	0	0	0	0.090954	1	8608	8608		81.525	15.096	1	522350			20014	6707	12638	12695	20310	20310					0.029085029181942446
KEQELQQTL	9	Unmodified	_KEQELQQTL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7985229492188	2	558.798403	1115.58225	0.52458	0.00029314	-0.51247	-0.00028637	0.01211	6.7668E-06	558.7979765124427	28.117	0.57411	28.117	27.912	28.486	0					25	11	4	0	0	0	0.0079272	1	9870	9870		145.46	13.844	1	2746600			20015	6707	12638	12695	20311	20311					0.029085029181942446
KEQELQQTL	9	Unmodified	_KEQELQQTL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.7990112304688	2	558.798403	1115.58225	-0.46937	-0.00026229	1.0524	0.00058808	0.58302	0.00032579	558.7990079817374	27.846	0.1513	27.846	27.751	27.903	0					10	5	2	0	0	0	0.36135	1	8899	8899		45.022	9.8702	1	160630			20016	6707	12638	12695	20312	20312					0.029085029181942446
KEQEQAQKL	9	Unmodified	_KEQEQAQKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.2996215820312	2	551.29857	1100.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.823	1	15.823	15.323	16.323	0								0	0	0	0.051298	1	3509	3509		85.862	0.94631	1				20017	4047	12639	12696	20313	20313					0.03631922638055585
KEQEQAQKL	9	Unmodified	_KEQEQAQKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2994995117188	2	551.29857	1100.58259	0.5806	0.00032008	1.4943	0.0008238	2.0749	0.0011439	551.2994316216359	16.142	0.1446	16.142	16.049	16.194	0					10	3	4	0	0	0	5.4275E-05	1	4306	4306		195.05	40.928	1	404390			20018	4047	12639	12696	20314	20314					0.03631922638055585
KEQEQAQKL	9	Unmodified	_KEQEQAQKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.3003540039062	2	551.29857	1100.58259	0.28718	0.00015832	2.6804	0.0014777	2.9676	0.001636	551.3000582911318	15.833	0.086853	15.833	15.786	15.872	0					5	3	2	0	0	0	0.014413	1	3683	3683		131.62	5.3736	1	58455			20019	4047	12639	12696	20315	20315					0.03631922638055585
KEQEQAQKL	9	Unmodified	_KEQEQAQKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2989501953125	2	551.29857	1100.58259	1.644	0.00090633	-0.98798	-0.00054467	0.65602	0.00036166	551.2982141390667	16.072	0.16627	16.072	15.962	16.128	0					7	3	3	0	0	0	0.0011548	1	4534	4534		181.41	27.289	1	771570			20020	4047	12639	12696	20316	20316					0.03631922638055585
KEQEQAQKL	9	Unmodified	_KEQEQAQKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2994384765625	2	551.29857	1100.58259	-1.3521	-0.00074543	4.017	0.0022146	2.6648	0.0014691	551.301149070462	15.89	0.085216	15.89	15.831	15.916	0					6	3	2	0	0	0	0.02953	1	3648	3648		109.48	5.4215	1	69227			20021	4047	12639	12696	20317	20317					0.03631922638055585
KEQEQAQKL	9	Unmodified	_KEQEQAQKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2998046875	2	551.29857	1100.58259	3.7096	0.0020451	-2.3186	-0.0012782	1.391	0.00076687	551.2977202736873	16.072	0.36819	16.072	15.763	16.131	0					11	7	3	0	0	0	0.10915	1	4388	4388		77.318	5.0743	1	711650			20022	4047	12639	12696	20318	20318					0.03631922638055585
KEQEVLKK	8	Unmodified	_KEQEVLKK_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.30279541015625	2	501.303124	1000.5917	-2.1055	-0.0010555	3.2488	0.0016286	1.1433	0.00057312	501.3053246562007	25.641	0.31758	25.641	25.46	25.778	0					22	8	4	0	0	0	0.2498	1	8184	8184		101.6	13.846	1	984960	+		20023	12863	12640	12697	20319	20319					0.09142315994370165
KEQFIKGDI	9	Unmodified	_KEQFIKGDI_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7691040039062	2	539.300581	1076.58661	0.89975	0.00048524	-0.34729	-0.00018729	0.55246	0.00029794	539.300384833342	33.56	0.35545	33.56	33.424	33.779	0					34	13	4	0	0	0	0.4966	1	10890	10890		32.812	6.1195	1	1942100	+		20024	15204	12641	12698	20320	20320					0.05138012131783398
KEQLEIWH	8	Unmodified	_KEQLEIWH_					0	0	0		APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.52691650390625	3	361.525825	1081.55564	3.1157	0.0011264	-0.52723	-0.00019061	2.5884	0.00093578	361.525802597651	25.974	0.41573	25.974	25.866	26.282	0					25	8	5	0	0	0	0.74117	1	9128	9128		23.042	0	1	1958700			20025	185	12642	12699	20321	20321					0.018128588175159166
KEQLHTKE	8	Unmodified	_KEQLHTKE_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-10|NIN	REV__nc|ENSG00000100503|Q8N4C6-10|NIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7746887207031	2	506.774731	1011.53491	-0.36694	-0.00018595	0.2328	0.00011798	-0.13414	-6.7977E-05	506.77488940245206	19.009	0.16618	19.009	18.9	19.066	0					8	3	3	0	0	0	0.43813	1	5945	5945		66.429	2.222	1	1900800	+		20026	13560	12643	12700	20322	20322					0.029602684378460253
KEQLTRYNS	9	Unmodified	_KEQLTRYNS_					0	0	0			REV__SLITRK3|p.L812Q|1|0.27|ENSG00000121871|chr3:165188396-165188396|A/T|missense_variant	REV__SLITRK3|p.L812Q|1|0.27|ENSG00000121871|chr3:165188396-165188396|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7964477539062	2	569.796195	1137.57784	0.056599	3.225E-05	0.66725	0.0003802	0.72385	0.00041245	569.7965614462988	15.934	0.13756	15.934	15.841	15.979	0					8	3	3	0	0	0	0.13267	1	4222	4222		71.877	6.4121	1	1057700	+		20027	21541	12644	12701	20323	20323					0.01455038495282679
KEQQKGKGEH	10	Unmodified	_KEQQKGKGEH_					0	0	0			REV__ENST00000510871.5_1_4:40427923-40438677:-|nuORF	REV__ENST00000510871.5_1_4:40427923-40438677:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	584.8050537109375	2	584.807094	1167.59963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.003	1	37.003	36.503	37.503	0								0	0	0	0.37129	1	14447	14447		39.253	3.6345	1		+		20028	15907	12645	12702	20324	20324					0.022538432438750533
KEQVIAVYP	9	Unmodified	_KEQVIAVYP_					0	0	0			REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.79638671875	2	523.797675	1045.5808	-1.2757	-0.00066823	-1.5657	-0.00082013	-2.8415	-0.0014884	523.7969237528633	18.878	0.18359	18.878	18.792	18.975	0					10	4	3	0	0	0	0.036372	1	5022	5022		102.77	102.77	1	710070	+		20029	15869	12646	12703	20325	20325					0.059829136200733046
KEQVQLKRT	9	Unmodified	_KEQVQLKRT_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3385009765625	2	565.33803	1128.66151	-0.34676	-0.00019604	0.85351	0.00048252	0.50675	0.00028649	565.3384186279332	16.289	0.16139	16.289	16.206	16.368	0					13	6	3	0	0	0	0.012115	1	3867	3867		131.62	16.122	1	650770	+		20030	16458	12647	12704	20326	20326					0.10232194662989968
KERCALLER	9	Unmodified	_KERCALLER_					0	0	0			REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3121948242188	2	559.310958	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.064	1	22.064	21.564	22.564	0								0	0	0	0.22075	1	6436	6436		25.574	0	1		+		20031	19043	12648	12705	20327	20327					0.05372279239782074
KERDLSKKL	9	Unmodified	_KERDLSKKL_					0	0	0			REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.8412475585938	2	558.840405	1115.66626	0.12145	6.7872E-05	1.7125	0.00095702	1.834	0.0010249	558.8413041784167	14.513	0.098495	14.513	14.463	14.561	0					7	4	2	0	0	0	0.22837	1	3150	3150		58.23	0	1	82605	+		20032	17719	12649	12706	20328	20328					0.11305078805776247
KERDLSKKL	9	Unmodified	_KERDLSKKL_					0	0	0			REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.8406372070312	2	558.840405	1115.66626	1.76	0.00098357	-1.1628	-0.00064984	0.59717	0.00033372	558.8396971155942	14.739	0.31438	14.739	14.68	14.994	0					12	6	4	0	0	0	0.020674	1	3903	3903		120.87	16.855	1	832680	+		20033	17719	12649	12706	20329	20329					0.11305078805776247
KEREKELEK	9	Unmodified	_KEREKELEK_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.8326416015625	2	594.832777	1187.651	0.2202	0.00013098	-0.10808	-6.429E-05	0.11212	6.6691E-05	594.8325264585453	13.453	0.25718	13.453	13.367	13.624	0					12	7	3	0	0	0	0.070005	1	3072	3072		88.177	0	1	572060	+		20034	13480	12650	12707	20330	20330					0.06468167217872178
KERELELK	8	Unmodified	_KERELELK_					0	0	0		ENST00000469071.1_1_1:156767061-156770249:+|nuORF;ENSG00000143294|ENST00000271526|PRCC	ENST00000469071.1_1_1:156767061-156770249:+|nuORF	ENST00000469071.1_1_1:156767061-156770249:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8067016601562	2	522.806031	1043.59751	1.6654	0.00087068	-0.84204	-0.00044022	0.82337	0.00043046	522.8057068243729	26.596	0.24008	26.596	26.535	26.775	0					9	5	3	0	0	0	0.32597	1	9206	9206		79.713	0	1	211480			20035	4536	12651	12708	20331	20331					0.07745414506030102
KEREQFGKP	9	Unmodified	_KEREQFGKP_					0	0	0		tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1	tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1	tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.80322265625	2	559.80128	1117.58801	3.4696	0.0019423	-0.26941	-0.00015081	3.2002	0.0017915	559.8012332557487	16.225	0.21821	16.225	16.166	16.384	0					10	4	4	0	0	0	0.098791	1	4461	4461		79.713	8.8964	1	700530			20036	23031	12652	12709	20332	20332					0.03391646220529765
KEREVIIS	8	Unmodified	_KEREVIIS_					0	0	0			REV__tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	REV__tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7848205566406	2	487.287474	972.560395	-0.53743	-0.00026188	0.31359	0.00015281	-0.22384	-0.00010908	487.28763395129636	14.517	0.42052	14.517	14.257	14.677	0					21	8	4	0	0	0	0.64144	1	3520	3520		42.396	0	1	1224800	+		20037	21760	12653	12710	20333	20333					0.07301742960294177
KERGQAVEV	9	Unmodified	_KERGQAVEV_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2806396484375	2	508.28018	1014.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.306	1	17.306	16.806	17.806	0								0	0	0	0.38404	1	4287	4287		15.642	0	1				20038	7027	12654	12711	20334	20334					0.03911670812135526
KERIGNLK	8	Unmodified	_KERIGNLK_					0	0	0		tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2955322265625	2	479.295633	956.576714	-0.47143	-0.00022595	0.091223	4.3723E-05	-0.3802	-0.00018223	479.29568561993784	22.685	0.20983	22.685	22.584	22.794	0					8	4	3	0	0	0	0.25143	1	7724	7724		98.629	0	1	1039000			20039	23028	12655	12712	20335	20335					0.09668868917049167
KERIHVEQ	8	Unmodified	_KERIHVEQ_					0	0	0			REV__ENSG00000197385|ENST00000360311|ZNF860	REV__ENSG00000197385|ENST00000360311|ZNF860	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2860717773438	2	519.788173	1037.56179	1.6545	0.00086	-2.6787	-0.0013924	-1.0242	-0.00053238	519.7873552450392	13.086	0.37691	13.086	13.012	13.389	0					20	8	3	0	0	0	0.6088	1	3238	3238		29.15	4.9468	1	833840	+		20040	17331	12656	12713	20336	20336					0.04451377049053917
KERKGQRKM	9	Unmodified	_KERKGQRKM_					0	0	0			REV__ENST00000361549.2_1_12:108912031-108913249:+|nuORF	REV__ENST00000361549.2_1_12:108912031-108913249:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.8391723632812	2	580.837674	1159.66079	1.5154	0.00088019	1.5384	0.00089358	3.0538	0.0017738	580.8387696929847	38.59	0.43315	38.59	38.333	38.766	0					24	15	2	0	0	0	0.54081	1	15132	15132		20.947	8.1352	1	86942	+		20041	17442	12657	12714	20337	20337					0.08735076742300407
KERNLKVK	8	Unmodified	_KERNLKVK_					0	0	0		ENST00000438503.1_1_2:149627595-149627934:-|nuORF	ENST00000438503.1_1_2:149627595-149627934:-|nuORF	ENST00000438503.1_1_2:149627595-149627934:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8240661621094	2	507.824558	1013.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.566	1	12.566	12.066	13.066	0								0	0	0	1.7419	1	2673	2673		21.96	0	1				20042	9551	12658	12715	20338	20338					0.1282913084246502
KERNPISVKN	10	Unmodified	_KERNPISVKN_					0	0	0		ENST00000358582.8_1_19:38159870-38160044:-|nuORF	ENST00000358582.8_1_19:38159870-38160044:-|nuORF	ENST00000358582.8_1_19:38159870-38160044:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.5631408691406	3	395.56305	1183.66732	0.90545	0.00035816	-0.7778	-0.00030767	0.12765	5.0494E-05	395.5627252825415	18.677	0.21815	18.677	18.516	18.734	0					14	5	4	0	0	0	0.56063	1	5525	5525		38.754	1.2454	1	341440			20043	8834	12659	12716	20339	20339					0.0828329317466796
KERNSPKP	8	Unmodified	_KERNSPKP_					0	0	0			REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF	REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.26995849609375	2	478.269616	954.524678	1.0143	0.00048512	-0.62458	-0.00029872	0.38975	0.00018641	478.26939465366263	13.998	0.24808	13.998	13.838	14.086	0					25	12	3	0	0	0	0.57171	1	2785	2785		52.937	1.6012	1	123260	+		20044	12076	12660	12717	20340	20340					0.045597055032772005
KERQEDLE	8	Unmodified	_KERQEDLE_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7578125	2	523.759278	1045.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.976	1	17.976	17.476	18.476	0								0	0	0	1.7419	1	4398	4398		37.159	0	1		+		20045	15764	12661	12718	20341	20341					-0.01692929667046883
KERQFDQI	8	Unmodified	_KERQFDQI_					0	0	0			REV__nc|ENSG00000108312|P17480-2|UBTF	REV__nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2819213867188	2	532.28018	1062.54581	0.28861	0.00015362	2.4141	0.001285	2.7027	0.0014386	532.2817949130745	22.986	0.11702	22.986	22.927	23.044	0					4	2	2	0	0	0	0.58597	1	7873	7873		51.335	5.3835	1	113160	+		20046	13871	12662	12719	20342	20342					0.01703670812139535
KERSGVSL	8	Unmodified	_KERSGVSL_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.25079345703125	2	438.250892	874.48723	-0.57463	-0.00025183	-0.033727	-1.4781E-05	-0.60836	-0.00026661	438.2509651630016	19.204	0.31312	19.204	19.047	19.36	0					11	6	3	0	0	0	0.5535	1	5903	5903		54.776	3.4409	1	1539100			20047	7222;6080;3386	12663	12720	20343	20343					0.04496614237677932
KERSLLKR	8	Unmodified	_KERSLLKR_					0	0	0			REV__ENSG00000182481|ENST00000330459|KPNA2	REV__ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3300170898438	2	515.330008	1028.64546	-0.50052	-0.00025793	0.47761	0.00024613	-0.022908	-1.1805E-05	515.3303148106005	17.93	0.42193	17.93	17.819	18.241	0					15	8	3	0	0	0	0.50061	1	5423	5423		49.442	5.3247	1	4590600	+		20048	16885	12664	12721	20344	20344					0.13228533216761207
KERSREVK	8	Unmodified	_KERSREVK_					0	0	0			REV__nc|ENSG00000017260|P98194-4|ATP2C1	REV__nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.3035278320312	2	516.301447	1030.58834	3.2829	0.001695	0.78934	0.00040754	4.0722	0.0021025	516.3018504276333	24.304	0.65935	24.304	24.096	24.756	0					35	13	5	0	0	0	0.25143	1	8351	8351		98.629	10.875	1	4601200	+		20049	12928	12665	12722	20345	20345					0.07427065940373723
KERTVTQL	8	Unmodified	_KERTVTQL_					0	0	0			REV__ENSG00000179071|ENST00000316398|CCDC89	REV__ENSG00000179071|ENST00000316398|CCDC89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7848205566406	2	487.785099	973.555644	-0.081624	-3.9815E-05	-1.2457	-0.00060764	-1.3273	-0.00064746	487.78484936512274	14.242	0.31021	14.242	13.991	14.301	0					8	6	2	0	0	0	0.49216	1	3661	3661		60.972	2.742	1	385670	+		20050	16762	12666	12723	20346	20346					0.06780858817523949
KESAEFQTQL	10	Unmodified	_KESAEFQTQL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.796142578125	2	590.79586	1179.57717	0.12412	7.333E-05	0.074322	4.3909E-05	0.19844	0.00011724	590.795784320962	32.206	0.23123	32.206	32.114	32.345	0					17	10	3	0	0	0	0.13359	1	10389	10389		89.561	35.964	1	93615			20051	1219	12667	12724	20347	20347					-0.005438009444333147
KESAEFQTQL	10	Unmodified	_KESAEFQTQL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.796142578125	2	590.79586	1179.57717	0.2253	0.00013311	-0.059154	-3.4948E-05	0.16615	9.816E-05	590.7958175960456	32.462	0.25537	32.462	32.369	32.625	0					17	6	4	0	0	0	0.022935	1	11911	11911		123.11	52.295	1	675990			20052	1219	12667	12724	20348	20348					-0.005438009444333147
KESAEFQTQL	10	Unmodified	_KESAEFQTQL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.7958374023438	2	590.79586	1179.57717	-0.099781	-5.895E-05	0.23242	0.00013731	0.13264	7.8364E-05	590.7961306407551	32.455	0.2121	32.455	32.343	32.555	0					10	5	3	0	0	0	0.44971	1	12339	12339		50.791	7.927	1	98051			20053	1219	12667	12724	20349	20349					-0.005438009444333147
KESAEFQTQL	10	Unmodified	_KESAEFQTQL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	590.7958984375	2	590.79586	1179.57717	-1.7765	-0.0010496	2.3806	0.0014065	0.60408	0.00035689	590.7975561687472	32.262	0.19392	32.262	32.16	32.354	0					9	5	3	0	0	0	0.41729	1	11194	11194		54.343	16.835	1	77287			20054	1219	12667	12724	20350	20350					-0.005438009444333147
KESCFVQN	8	Unmodified	_KESCFVQN_					0	0	0			REV__ENSG00000185963|ENST00000356884|BICD2	REV__ENSG00000185963|ENST00000356884|BICD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.72271728515625	2	477.72111	953.427666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.978	1	18.978	18.478	19.478	0								0	0	0	1.7419	1	5645	5645		44.117	3.3386	1		+		20055	17060	12668	12725	20351	20351					-0.05091024768023544
KESDESIK	8	Unmodified	_KESDESIK_					0	0	0		tr|U7SSQ6|U7SSQ6_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01454PE=4SV=1	tr|U7SSQ6|U7SSQ6_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01454PE=4SV=1	tr|U7SSQ6|U7SSQ6_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01454PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.23822021484375	2	468.237647	934.460741	0.63667	0.00029811	0.11611	5.4368E-05	0.75278	0.00035248	468.2377198454051	12.307	0.63097	12.307	12.223	12.854	0					29	15	4	0	0	0	0.25102	1	2728	2728		99.375	11.621	1	3552400			20056	22749	12669	12726	20352	20352					-0.009111194443221393
KESEIKKLV	9	Unmodified	_KESEIKKLV_					0	0	0		tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3322143554688	2	537.331882	1072.64921	0.21547	0.00011578	0.54627	0.00029353	0.76174	0.00040931	537.3320994481664	22.721	0.29715	22.721	22.633	22.93	0					18	7	4	0	0	0	0.10915	1	7430	7430		77.318	1.1479	1	1369400			20057	23050	12670	12727	20353	20353					0.11579158199947415
KESEIKKLV	9	Unmodified	_KESEIKKLV_					0	0	0		tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.332763671875	2	537.331882	1072.64921	1.0332	0.00055519	0.40041	0.00021515	1.4336	0.00077034	537.3320012795833	22.52	0.28408	22.52	22.422	22.706	0					8	6	2	0	0	0	0.28897	1	6736	6736		51.193	6.8155	1	139810			20058	23050	12670	12727	20354	20354					0.11579158199947415
KESEVYKML	9	Unmodified	_KESEVYKML_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1;PDLIM1|p.D191N|1|0.47|ENSG00000107438|chr10:95247329-95247329|C/T|missense_variant	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7947387695312	2	563.794275	1125.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.546	1	31.546	31.046	32.046	0								0	0	0	0.10319	1	11495	11495		70.816	0	1				20059	2481	12671	12728	20355	20355					0.0162323267722968
KESHEMGQAL	10	Unmodified	_KESHEMGQAL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5;SPAG5|p.N715Tfs*4|1|0.09|ENSG00000076382|chr17:28584669-28584669|T/-|frameshift_variant	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.268798828125	2	565.268955	1128.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.461	1	20.461	19.961	20.961	0								0	0	0	0.40941	1	5718	5718		22.58	0	1				20060	1562	12672	12729	20356	20356					-0.03576296647793242
KESHEMGQAL	10	Unmodified	_KESHEMGQAL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5;SPAG5|p.N715Tfs*4|1|0.09|ENSG00000076382|chr17:28584669-28584669|T/-|frameshift_variant	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.26904296875	2	565.268955	1128.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.539	1	20.539	20.039	21.039	0								0	0	0	0.37306	1	5794	5794		33.922	8.3476	1				20061	1562	12672	12729	20357	20357					-0.03576296647793242
KESKDTKK	8	Unmodified	_KESKDTKK_					0	0	0		nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.259033203125	2	482.277106	962.53966	0.69156	0.00033353	-1.3161	-0.00063473	-0.62455	-0.00030121	482.27659299662207	11.509	0.34464	11.509	11.427	11.771	0					15	9	2	0	0	0	0.6088	1	2487	2487		47.657	1.6851	1	170240			20062	4195	12673	12730	20358	20358					0.056891525806122445
KESKEAAQL	9	Unmodified	_KESKEAAQL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;AP1G2|p.L755Cfs*3|1|0.18|ENSG00000213983|chr14:23559844-23559844|G/-|frameshift_variant;ENSG00000213983|ENST00000397120|AP1G2;AP1G2|p.N690Tfs*6|1|0.41|ENSG00000213983|chr14:23560343-23560343|T/-|frameshift_variant	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2745056152344	2	502.274564	1002.53457	-0.072741	-3.6536E-05	0.0093733	4.7079E-06	-0.063368	-3.1828E-05	502.27443290863835	17.015	0.21592	17.015	16.929	17.145	0					10	5	3	0	0	0	0.029172	1	4734	4734		114.89	24.294	1	937960			20063	173	12674	12731	20359	20359					0.033408487179940494
KESKEAAQL	9	Unmodified	_KESKEAAQL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;AP1G2|p.L755Cfs*3|1|0.18|ENSG00000213983|chr14:23559844-23559844|G/-|frameshift_variant;ENSG00000213983|ENST00000397120|AP1G2;AP1G2|p.N690Tfs*6|1|0.41|ENSG00000213983|chr14:23560343-23560343|T/-|frameshift_variant	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2742919921875	2	502.274564	1002.53457	-2.0785	-0.001044	2.2942	0.0011523	0.21579	0.00010839	502.2758329600084	16.806	0.15155	16.806	16.734	16.885	0					9	4	3	0	0	0	0.42175	1	4049	4049		40.058	0	1	288980			20064	173	12674	12731	20360	20360					0.033408487179940494
KESKTVAEKA	10	Unmodified	_KESKTVAEKA_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8093872070312	2	545.808771	1089.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.041	1	12.041	11.541	12.541	0								0	0	0	0.41137	1	2469	2469		27.047	2.5281	1		+		20065	14609	12675	12732	20361	20361					0.06177093297856118
KESLATKE	8	Unmodified	_KESLATKE_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2502136230469	2	453.250557	904.486562	0.87713	0.00039756	-0.98641	-0.00044709	-0.10928	-4.9531E-05	453.2499016455993	25.053	0.26847	25.053	24.996	25.264	0					8	5	2	0	0	0	0.27565	1	8738	8738		90.601	0	1	494940	+		20066	13072	12676	12733	20362	20362					0.030497747979552514
KESLKELSL	9	Unmodified	_KESLKELSL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.8084716796875	2	523.808239	1045.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.846	1	31.846	31.346	32.346	0								0	0	0	0.20646	1	11634	11634		50.034	0.49747	1				20067	1117	12677	12734	20363	20363					0.0809487892895504
KESLKELSL	9	Unmodified	_KESLKELSL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.310546875	2	523.808239	1045.60193	0.039494	2.0687E-05	1.3453	0.00070468	1.3848	0.00072537	524.3106279476126	34.208	0.21475	34.208	34.121	34.336	0					8	5	2	0	0	0	0.38666	1	13177	13177		42.864	0.46813	1	102490			20068	1117	12677	12734	20364	20364					0.0809487892895504
KESLTTREI	9	Unmodified	_KESLTTREI_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF;ENST00000465087.1_1_10:5494419-5494892:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.8009033203125	2	538.800946	1075.58734	-1.464	-0.00078881	0.8049	0.00043368	-0.65911	-0.00035513	538.8011083484676	23.159	0.13887	23.159	23.064	23.203	0					6	3	2	0	0	0	0.34452	1	7030	7030		46.457	2.0796	1	61062			20069	6454	12678	12735	20365	20365					0.0525680678081244
KESMCSVCKN	10	Carbamidomethyl (C)	_KESMC(Carbamidomethyl (C))SVCKN_	KESMC(0.962)SVC(0.038)KN		KESMC(14)SVC(-14)KN		0	1	0			REV__NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	REV__NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.2569580078125	2	593.256676	1184.4988	3.1749	0.0018836	-3.6906	-0.0021894	-0.51562	-0.0003059	593.2551056597474	19.268	0.3142	19.268	19.162	19.476	0					14	6	5	0	0	0	0.41335	1	5937	5937		54.776	15.523	2	1047700	+		20070	14416	12679	12736	20366	20366	538				-0.08607016117161947
KESQVLLTL	9	Unmodified	_KESQVLLTL_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.3104248046875	2	515.810782	1029.60701	0.033937	1.7505E-05	-1.3746	-0.00070905	-1.3407	-0.00069154	515.810705581552	42.397	0.22517	42.397	42.295	42.521	0					26	12	3	0	0	0	0.46345	1	16054	16054		29.17	0	1	212630			20071	3824	12680	12737	20367	20367					0.09339182791586609
KESSKRRW	8	Unmodified	_KESSKRRW_					0	0	0			REV__ENST00000495183.5_1_6:29910749-29913287:+|nuORF	REV__ENST00000495183.5_1_6:29910749-29913287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8013305664062	2	538.801614	1075.58868	0.24238	0.00013059	-1.457	-0.00078506	-1.2147	-0.00065446	538.8007300622003	23.394	0.15079	23.394	23.294	23.444	0					8	3	3	0	0	0	0.32815	1	7750	7750		79.451	1.1872	1	563240	+		20072	19759	12681	12738	20368	20368					0.05390485660223021
KESSTVFEL	9	Unmodified	_KESSTVFEL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2689208984375	2	520.268947	1038.52334	0.068194	3.5479E-05	0.34773	0.00018091	0.41592	0.00021639	520.2690221779499	40.403	0.31881	40.403	40.301	40.62	0					39	12	4	0	0	0	0.098791	1	15381	15381		79.713	19.419	1	1338500			20073	2234	12682	12739	20369	20369					0.005620266238793192
KESSTVFEL	9	Unmodified	_KESSTVFEL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2691040039062	2	520.268947	1038.52334	1.6812	0.00087466	-1.0182	-0.00052972	0.66302	0.00034495	520.2682895521024	40.39	0.40292	40.39	40.273	40.676	0					43	16	4	0	0	0	0.095583	1	15897	15897		80.455	20.051	1	1213100			20074	2234	12682	12739	20370	20370					0.005620266238793192
KESSVRLK	8	Unmodified	_KESSVRLK_					0	0	0			REV__PCDHGB5|p.R64Q|1|0.1|ENSG00000276547|chr5:141398318-141398318|G/A|missense_variant	REV__PCDHGB5|p.R64Q|1|0.1|ENSG00000276547|chr5:141398318-141398318|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.78741455078125	2	473.787641	945.56073	-0.12147	-5.7551E-05	-0.59754	-0.00028311	-0.71901	-0.00034066	473.78744632215506	20.638	0.16833	20.638	20.579	20.747	0					7	3	3	0	0	0	0.46013	1	6728	6728		64.207	2.0999	1	380680	+		20075	17740	12683	12740	20371	20371					0.08577162680137462
KESTITRKL	9	Unmodified	_KESTITRKL_					0	0	0		ENSG00000164687|ENST00000297258|FABP5;nc|ENSG00000293165|A8MUU1|FABP5P3;ENST00000477993.1_1_7:152139729-152140032:+|nuORF	ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3275756835938	2	538.327131	1074.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.813	1	17.813	17.313	18.313	0								0	0	0	0.16453	1	4322	4322		56.434	12.057	1				20076	5718	12684	12741	20372	20372					0.10537389914429696
KESTITRKL	9	Unmodified	_KESTITRKL_					0	0	0		ENSG00000164687|ENST00000297258|FABP5;nc|ENSG00000293165|A8MUU1|FABP5P3;ENST00000477993.1_1_7:152139729-152140032:+|nuORF	ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.32763671875	2	538.327131	1074.63971	0.23258	0.0001252	1.0198	0.00054901	1.2524	0.00067421	538.3276182200465	18.123	0.22873	18.123	18.025	18.254	0					6	5	2	0	0	0	0.095583	1	5253	5253		80.455	5.4113	1	771730			20077	5718	12684	12741	20373	20373					0.10537389914429696
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.3114624023438	2	520.310949	1038.60735	0.66476	0.00034588	-0.07522	-3.9138E-05	0.58954	0.00030674	520.3108397363765	35.649	0.66942	35.649	35.51	36.18	0					90	32	5	0	0	0	0.12834	2	11653	11653;11770		72.879	30.483	1	10780000			20078	7854	12685	12742	20374;20375	20374					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.310791015625	2	520.310949	1038.60735	0.068472	3.5627E-05	0.22141	0.0001152	0.28989	0.00015083	520.3110921822414	35.939	1.1961	35.939	35.779	36.975	0					87	32	5	0	0	0	0.048471	2	13641	13473;13641		95.815	53.419	1	35878000			20079	7854	12685	12742	20376;20377	20377					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.311279296875	2	520.310949	1038.60735	0.26342	0.00013706	0.3816	0.00019855	0.64502	0.00033561	520.3109996564391	35.678	0.91825	35.678	35.557	36.476	0					125	44	5	0	0	0	0.0406	1	12056	12056		98.629	36.522	1	11294000			20080	7854	12685	12742	20378	20378					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.31103515625	2	520.310949	1038.60735	-0.22663	-0.00011792	0.48344	0.00025154	0.25681	0.00013362	520.3113016957582	35.923	0.3638	35.923	35.808	36.172	0					30	11	4	0	0	0	0.078509	1	13943	13943		85.161	44.383	1	710640			20081	7854	12685	12742	20379	20379					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.3119506835938	2	520.310949	1038.60735	1.0137	0.00052744	-0.57594	-0.00029967	0.43777	0.00022778	520.3104862645815	35.716	0.89845	35.716	35.57	36.469	0					97	34	5	0	0	0	0.15163	1	12846	12846		67.494	19.836	1	19303000			20082	7854	12685	12742	20380	20380					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.3114624023438	2	520.310949	1038.60735	-1.348	-0.00070139	1.5381	0.00080031	0.19011	9.8914E-05	520.3115613389849	35.708	0.99655	35.708	35.563	36.56	0					104	39	5	0	0	0	0.36892	2	12695	12695;12841		44.377	5.8856	1	20478000			20083	7854	12685	12742	20381;20382	20381					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3112182617188	2	520.310949	1038.60735	1.6235	0.00084472	-1.4194	-0.00073853	0.20409	0.00010619	520.3101290290779	35.825	1.5	35.825	35.671	37.171	0					89	30	5	0	0	0	0.0086566	3	13851	13851;14019;14191		143.89	75.1	1	53894000			20084	7854	12685	12742	20383;20384;20385	20383					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3109130859375	2	520.310949	1038.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.489	1	37.489	36.989	37.989	0								0	0	0	0.29356	1	14663	14663		36.447	7.2767	1				20085	7854	12685	12742	20386	20386					0.08958602511415847
KESTVSTTK	9	Unmodified	_KESTVSTTK_					0	0	0			REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7638854980469	2	490.766571	979.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.594	1	17.594	17.094	18.094	0								0	0	0	0.18645	1	4439	4439		52.937	10.541	1		+		20086	21730	12686	12743	20387	20387					0.028011424810870267
KESVKKEAA	9	Unmodified	_KESVKKEAA_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2846984863281	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.93	1	11.93	11.43	12.43	0								0	0	0	0.15687	1	2405	2405		58.23	0	1				20087	4374	12687	12744	20388	20388					0.06057439097662609
KESVMDKV	8	Oxidation (M)	_KESVM(Oxidation (M))DKV_		KESVM(1)DKV		KESVM(74)DKV	0	0	1			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2426452636719	2	476.244418	950.474282	2.2764	0.0010841	0.9751	0.00046439	3.2515	0.0015485	476.24497378751255	26.198	0.56966	26.198	25.966	26.536	0					23	11	3	0	0	0	0.37144	1	9202	9202		74.255	19.479	1	925110	+		20088	16914	12688	12745	20389	20389		648			-0.0029358493673043995
KETAGLEEGAL	11	Unmodified	_KETAGLEEGAL_					0	0	0			REV__ENST00000458669.1_1_16:16422307-16422873:+|nuORF	REV__ENST00000458669.1_1_16:16422307-16422873:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.29150390625	2	559.290411	1116.56627	-0.79962	-0.00044722	1.3096	0.00073244	0.50997	0.00028522	559.2913083379733	30.684	0.19218	30.684	30.572	30.764	0					9	5	2	0	0	0	0.063642	1	10470	10470		98.582	2.7668	1	162940	+		20089	19357	12689	12746	20390	20390					0.012647966812892264
KETAPAAPPL	10	Unmodified	_KETAPAAPPL_					0	0	0			REV__ENST00000338560.11_1_17:16319012-16320986:+|nuORF	REV__ENST00000338560.11_1_17:16319012-16320986:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7773132324219	2	497.782025	993.549496	0.17817	8.8691E-05	-3.1825	-0.0015842	-3.0044	-0.0014955	497.78203207522216	29.519	0.32378	29.519	29.415	29.739	0					16	8	3	0	0	0	0.67098	1	10017	10017		25.574	9.9322	1	216700	+		20090	18433	12690	12747	20391	20391					0.05246340585983944
KETEGIHFY	9	Unmodified	_KETEGIHFY_					0	0	0			REV__ENST00000477639.5_1_7:44621634-44621805:-|nuORF	REV__ENST00000477639.5_1_7:44621634-44621805:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.274169921875	2	562.274564	1122.53457	0.96221	0.00054103	-0.89373	-0.00050252	0.068483	3.8506E-05	562.2738581856189	29.464	0.13476	29.464	29.379	29.513	0					5	3	2	0	0	0	0.39215	1	9930	9930		42.396	5.3677	1	86775	+		20091	15686	12691	12748	20392	20392					-0.021791512820072967
KETEGKLR	8	Unmodified	_KETEGKLR_					0	0	0		CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant;CEP152|p.E966Ffs*23|1|0.03|ENSG00000103995|chr15:48756352-48756353|-/AGAAGGAGACAGAA|frameshift_variant;nc|ENSG00000103995|O94986-1|CEP152;CEP152|p.I1277Lfs*20|1|0.2|ENSG00000103995|chr15:48744246-48744246|T/-|frameshift_variant;nc|ENSG00000103995|O94986-2|CEP152;CEP152|p.E1488Ifs*9|1|0.07|ENSG00000103995|chr15:48738920-48738921|-/TAATGAAAGACTTGGTTTAAAAGTAT|frameshift_variant;nc|ENSG00000103995|O94986-3|CEP152;CEP152|p.L1674Tfs*23|1|0.09|ENSG00000103995|chr15:48738362-48738363|-/T|frameshift_variant;ENSG00000103995|ENST00000380950|CEP152	CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant	CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7769470214844	2	480.777274	959.539994	0.92313	0.00044382	-2.1026	-0.0010109	-1.1795	-0.00056708	480.7765376057001	12.692	0.090954	12.692	12.649	12.74	0					4	2	2	0	0	0	0.46013	1	2776	2776		64.207	0	1	33289			20092	479	12692	12749	20393	20393					0.05860572300480271
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.3405151367188	2	544.339707	1086.66486	1.1712	0.00063752	-0.13402	-7.2953E-05	1.0372	0.00056457	544.3396874692322	20.765	0.14151	20.765	20.69	20.832	0					12	5	3	0	0	0	0.021015	1	5619	5619		127.46	44.711	1	216890			20093	2937	12693	12750	20394	20394					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.22882080078125	3	363.228897	1086.66486	0.47814	0.00017367	-0.38215	-0.00013881	0.095986	3.4865E-05	363.22867863617364	21.088	0.17873	21.088	20.997	21.175	0					14	4	4	0	0	0	0.032181	1	6635	6635		106.88	7.8673	1	2411600			20094	2937	12693	12750	20395	20395					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.3402099609375	2	544.339707	1086.66486	0.3687	0.0002007	0.68124	0.00037082	1.0499	0.00057152	544.3400564071377	21.088	0.21996	21.088	20.997	21.217	0					14	5	4	0	0	0	0.0021879	1	6638	6638		171.53	61.412	1	1643200			20095	2937	12693	12750	20396	20396					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.3404541015625	2	544.339707	1086.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.821	1	20.821	20.321	21.321	0								0	0	0	0.097963	1	5880	5880		65.465	9.9612	1				20096	2937	12693	12750	20397	20397					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.3400268554688	2	544.339707	1086.66486	0.32541	0.00017713	0.10369	5.6444E-05	0.4291	0.00023358	544.3398032222872	21.002	0.21594	21.002	20.896	21.112	0					9	4	3	0	0	0	1.7587E-08	1	6907	6907		218.73	108.61	1	623740			20097	2937	12693	12750	20398	20398					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.3397827148438	2	544.339707	1086.66486	-1.4939	-0.00081321	1.9765	0.0010759	0.48259	0.00026269	544.3402848804484	20.867	0.17066	20.867	20.808	20.979	0					6	4	2	0	0	0	0.021035	1	5960	5960		126.24	30.052	1	112350			20098	2937	12693	12750	20399	20399					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.3402709960938	2	544.339707	1086.66486	3.6825	0.0020045	-2.0253	-0.0011024	1.6572	0.00090209	544.3385778950701	21.011	0.16776	21.011	20.909	21.076	0					8	3	3	0	0	0	0.022698	1	6783	6783		124.08	38.218	1	867670			20099	2937	12693	12750	20400	20400					0.12499444716991093
KETEQPPK	8	Unmodified	_KETEQPPK_					0	0	0			REV__ENST00000563055.1_1_16:69783106-69788691:-|nuORF	REV__ENST00000563055.1_1_16:69783106-69788691:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7553405761719	2	478.756007	955.497461	-0.11581	-5.5443E-05	0.016413	7.8579E-06	-0.099392	-4.7585E-05	478.75540069524226	22.576	0.11011	22.576	22.518	22.628	0					6	2	3	0	0	0	0.43813	1	7676	7676		66.429	13.078	1	211140	+		20100	15103	12694	12751	20401	20401					0.017931771722373924
KETFAFQV	8	Unmodified	_KETFAFQV_					0	0	0		SYT16|p.V578A|1|0.23|ENSG00000139973|chr14:62100502-62100502|T/C|missense_variant	SYT16|p.V578A|1|0.23|ENSG00000139973|chr14:62100502-62100502|T/C|missense_variant	SYT16|p.V578A|1|0.23|ENSG00000139973|chr14:62100502-62100502|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.25714111328125	2	485.255643	968.496732	2.4859	0.0012063	0.56397	0.00027367	3.0499	0.00148	485.25599050148514	27.275	0.42308	27.275	27.12	27.543	0					15	8	3	0	0	0	0.42778	1	9733	9733		67.494	3.2864	1	1174700			20101	22511	12695	12752	20402	20402					0.011223825231809315
KETGGVEKL	9	Unmodified	_KETGGVEKL_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.77130126953125	2	480.771657	959.528761	0.51785	0.00024897	-1.7938	-0.00086242	-1.276	-0.00061346	480.7710351781063	19.159	0.19416	19.159	19.083	19.277	0					12	4	3	0	0	0	0.010427	1	5731	5731		140.11	21.369	1	422290			20102	5728	12696	12753	20403	20403					0.04737750206322744
KETGGVEKL	9	Unmodified	_KETGGVEKL_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.77178955078125	2	480.771657	959.528761	-1.3709	-0.0006591	1.1746	0.00056473	-0.19629	-9.437E-05	480.77244380001594	18.822	0.14798	18.822	18.762	18.91	0					7	4	2	0	0	0	0.3269	1	4982	4982		47.96	2.0076	1	106400			20103	5728	12696	12753	20404	20404					0.04737750206322744
KETGGVEKL	9	Unmodified	_KETGGVEKL_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.771484375	2	480.771657	959.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.963	1	18.963	18.463	19.463	0								0	0	0	0.29356	1	5056	5056		36.447	2.5251	1				20104	5728	12696	12753	20405	20405					0.04737750206322744
KETGGVEKL	9	Unmodified	_KETGGVEKL_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7715148925781	2	480.771657	959.528761	-0.63878	-0.00030711	-0.1866	-8.9714E-05	-0.82539	-0.00039682	480.771778011548	19.055	0.26644	19.055	18.946	19.212	0					9	5	2	0	0	0	0.022525	1	5832	5832		117.81	21.621	1	430700			20105	5728	12696	12753	20406	20406					0.04737750206322744
KETGQIVAI	9	Unmodified	_KETGQIVAI_					0	0	0		nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4	nc|ENSG00000101109|Q13043-2|STK4	nc|ENSG00000101109|Q13043-2|STK4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7814025878906	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.083	1	32.083	31.583	32.583	0								0	0	0	0.11184	1	10349	10349		68.787	0	1				20106	2091	12697	12754	20407	20407					0.06902340586009359
KETGQKIN	8	Unmodified	_KETGQKIN_					0	0	0		ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;nc|ENSG00000068912|Q96DZ1-2|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2579650878906	2	459.256174	916.497795	2.5191	0.0011569	0.82095	0.00037703	3.34	0.0015339	459.25683466051515	38.912	0.58266	38.912	38.661	39.243	0					22	12	2	0	0	0	0.6088	1	15326	15326		47.657	6.8792	1	200870			20107	1429	12698	12755	20408	20408					0.03620596892085359
KETITKTEY	9	Unmodified	_KETITKTEY_					0	0	0		tr|U7SUG0|U7SUG0_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01410PE=4SV=1	tr|U7SUG0|U7SUG0_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01410PE=4SV=1	tr|U7SUG0|U7SUG0_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01410PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.7967529296875	2	556.795329	1111.5761	0.11683	6.5049E-05	1.1468	0.00063852	1.2636	0.00070357	556.7960841591492	19.873	0.14308	19.873	19.808	19.951	0					8	4	3	0	0	0	0.39215	1	5455	5455		42.396	3.1433	1	114420			20108	22822	12699	12756	20409	20409					0.024779846866749722
KETKEKVE	8	Unmodified	_KETKEKVE_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7764892578125	2	495.776939	989.539325	0.94725	0.00046962	-1.5958	-0.00079115	-0.64852	-0.00032152	495.7760327595324	23.175	0.2668	23.175	23.069	23.335	0					10	5	3	0	0	0	0.61925	1	7834	7834		45.972	0	1	561820			20109	22853	12700	12757	20410	20410					0.04413732860757591
KETLKIDIL	9	Unmodified	_KETLKIDIL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8346557617188	2	536.834257	1071.65396	0.70001	0.00037579	0.39424	0.00021164	1.0942	0.00058743	536.8343827175004	39.535	0.15337	39.535	39.438	39.592	0					5	3	2	0	0	0	0.34452	1	15623	15623		46.457	0.48454	1	81706			20110	5578	12701	12758	20411	20411					0.12100042342717643
KETLKTLE	8	Unmodified	_KETLKTLE_					0	0	0			REV__tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	REV__tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.28131103515625	2	481.281857	960.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.673	1	22.673	22.173	23.173	0								0	0	0	1.7419	1	6446	6446		51.335	7.2187	1		+		20111	22080	12702	12759	20412	20412					0.06730920866141332
KETLPPPAAPP	11	Unmodified	_KETLPPPAAPP_					0	0	0		RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.317626953125	2	559.316232	1116.61791	-0.10631	-5.9461E-05	2.5052	0.0014012	2.3989	0.0013417	559.3178336068588	31.744	0.20541	31.744	31.638	31.844	0					6	4	2	0	0	0	0.63135	1	12011	12011		34.173	1.3601	1	68386			20112	6408	12703	12760	20413	20413					0.06426585165854704
KETNKAKR	8	Unmodified	_KETNKAKR_					0	0	0		RPGRIP1L|p.N1213T|1|0.05|ENSG00000103494|chr16:53611030-53611030|T/G|missense_variant	RPGRIP1L|p.N1213T|1|0.05|ENSG00000103494|chr16:53611030-53611030|T/G|missense_variant	RPGRIP1L|p.N1213T|1|0.05|ENSG00000103494|chr16:53611030-53611030|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7907409667969	2	487.790715	973.566878	0.8037	0.00039204	-1.2075	-0.00058903	-0.40384	-0.00019699	487.79001199562276	48.319	0.39295	48.319	48.167	48.56	0					38	20	2	0	0	0	0.79719	1	19173	19173		18.324	18.324	1	103710			20113	22355	12704	12761	20414	20414					0.0790368091164737
KETNLSLLS	9	Unmodified	_KETNLSLLS_					0	0	0			REV__TTC13|p.R627Nfs*8|1|0.19|ENSG00000143643|chr1:230921438-230921439|TC/-|frameshift_variant	REV__TTC13|p.R627Nfs*8|1|0.19|ENSG00000143643|chr1:230921438-230921439|TC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7845153808594	2	502.784764	1003.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.539	1	17.539	17.039	18.039	0								0	0	0	0.14033	1	4201	4201		62.107	9.1707	1		+		20114	15203	12705	12762	20415	20415					0.053340193778240064
KETPDKVEL	9	Unmodified	_KETPDKVEL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1;PWP1|p.R140Lfs*5|1|0.31|ENSG00000136045|chr12:107693013-107693013|G/-|frameshift_variant;nc|ENSG00000136045|Q13610-2|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7918701171875	2	529.790047	1057.56554	2.3475	0.0012437	4.2747	0.0022647	6.6222	0.0035084	529.7924847056888	24.317	0.2904	24.317	24.131	24.421	0					17	6	4	0	0	0	0.021015	1	8141	8141		120.31	7.895	1	777750			20115	4049	12706	12763	20416	20416					0.03906002032226752
KETPDKVEL	9	Unmodified	_KETPDKVEL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1;PWP1|p.R140Lfs*5|1|0.31|ENSG00000136045|chr12:107693013-107693013|G/-|frameshift_variant;nc|ENSG00000136045|Q13610-2|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7919921875	2	529.790047	1057.56554	0.73091	0.00038723	0.75577	0.0004004	1.4867	0.00078763	529.7905365636144	24.139	0.31863	24.139	24.028	24.347	0					14	6	3	0	0	0	0.11411	1	8296	8296		76.17	1.1264	1	506800			20116	4049	12706	12763	20417	20417					0.03906002032226752
KETQRTGK	8	Unmodified	_KETQRTGK_					0	0	0		ENST00000427167.5_1_7:80548183-80548351:-|nuORF	ENST00000427167.5_1_7:80548183-80548351:-|nuORF	ENST00000427167.5_1_7:80548183-80548351:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.26678466796875	2	474.267073	946.519593	-0.12095	-5.7363E-05	-0.16782	-7.9591E-05	-0.28877	-0.00013695	474.267068125189	14.516	0.10451	14.516	14.42	14.525	0					6	2	3	0	0	0	0.43813	1	3769	3769		66.429	8.1994	1	114110			20117	9454	12707	12764	20418	20418					0.04419401640654996
KETRKVEK	8	Unmodified	_KETRKVEK_					0	0	0			REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.30731201171875	2	509.306198	1016.59784	1.8352	0.00093465	-0.60336	-0.0003073	1.2318	0.00062736	509.30590521245085	13.711	0.1161	13.711	13.65	13.766	0					13	6	3	0	0	0	0.32597	1	2715	2715		79.713	3.5429	1	293730	+		20118	18122	12708	12765	20419	20419					0.09020834225896124
KETRKVEK	8	Unmodified	_KETRKVEK_					0	0	0			REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.306396484375	2	509.306198	1016.59784	0.98548	0.00050191	-0.029253	-1.4899E-05	0.95622	0.00048701	509.30617926140246	13.721	0.094016	13.721	13.664	13.758	0					9	5	2	0	0	0	0.27565	1	2713	2713		90.601	13.283	1	154250	+		20119	18122	12708	12765	20420	20420					0.09020834225896124
KETRKVEK	8	Unmodified	_KETRKVEK_					0	0	0			REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3061828613281	2	509.306198	1016.59784	0.2283	0.00011628	-0.34238	-0.00017437	-0.11407	-5.8098E-05	509.3060184855756	13.948	0.36176	13.948	13.889	14.251	0					17	7	4	0	0	0	0.24328	1	3521	3521		113.41	1.3044	1	2227600	+		20120	18122	12708	12765	20421	20421					0.09020834225896124
KETSENRQL	9	Unmodified	_KETSENRQL_					0	0	0			REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7876586914062	2	552.785827	1103.5571	1.8228	0.0010076	1.9807	0.0010949	3.8035	0.0021025	552.7862941105581	23.923	0.14084	23.923	23.832	23.973	0					7	3	3	0	0	0	0.37744	1	8003	8003		44.377	14.059	1	302820	+		20121	15887	12709	12766	20422	20422					0.009464481156101101
KETSYEEAL	9	Unmodified	_KETSYEEAL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant;RRBP1|p.N91Mfs*2|1|0.04|ENSG00000125844|chr20:17660238-17660238|G/-|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2564697265625	2	535.256037	1068.49752	0.58839	0.00031494	0.20525	0.00010986	0.79364	0.0004248	535.2561328718937	29.468	0.17087	29.468	29.379	29.55	0					9	5	3	0	0	0	0.22837	1	9301	9301		58.23	12.278	1	105510			20122	3441	12710	12767	20423	20423					-0.03398867618443546
KETSYEEAL	9	Unmodified	_KETSYEEAL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant;RRBP1|p.N91Mfs*2|1|0.04|ENSG00000125844|chr20:17660238-17660238|G/-|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2562866210938	2	535.256037	1068.49752	0.17623	9.433E-05	0.027806	1.4883E-05	0.20404	0.00010921	535.2561349063801	29.731	0.33297	29.731	29.6	29.933	0					15	8	3	0	0	0	0.047855	1	10653	10653		96.034	21.779	1	579300			20123	3441	12710	12767	20424	20424					-0.03398867618443546
KETSYEEAL	9	Unmodified	_KETSYEEAL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant;RRBP1|p.N91Mfs*2|1|0.04|ENSG00000125844|chr20:17660238-17660238|G/-|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2564697265625	2	535.256037	1068.49752	-1.3567	-0.00072618	1.7441	0.00093352	0.38736	0.00020734	535.2569877853853	29.498	0.13234	29.498	29.443	29.575	0					5	3	2	0	0	0	0.21263	1	9940	9940		60.118	5.3419	1	122350			20124	3441	12710	12767	20425	20425					-0.03398867618443546
KETTGIVSM	9	Unmodified	_KETTGIVSM_					0	0	0		ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENSG00000136631|ENST00000644510|VPS45	ENST00000497638.2_1_1:150039914-150048408:+|nuORF	ENST00000497638.2_1_1:150039914-150048408:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.25250244140625	2	483.252243	964.489932	0.67862	0.00032794	0.6414	0.00030996	1.32	0.0006379	483.2527077707325	29.907	0.40769	29.907	29.7	30.107	0					20	8	4	0	0	0	0.1424	1	11136	11136		69.628	18.292	1	659520			20125	4093	12711	12768	20426	20426					0.006267015803132381
KETTGIVSM	9	Unmodified	_KETTGIVSM_					0	0	0		ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENSG00000136631|ENST00000644510|VPS45	ENST00000497638.2_1_1:150039914-150048408:+|nuORF	ENST00000497638.2_1_1:150039914-150048408:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2520751953125	2	483.252243	964.489932	2.4156	0.0011673	-0.70582	-0.00034109	1.7098	0.00082626	483.2514949339761	29.87	0.85928	29.87	29.566	30.425	0					25	17	2	0	0	0	0.11898	1	10984	10984		75.043	21.692	1	656520			20126	4093	12711	12768	20427	20427					0.006267015803132381
KETTLRELK	9	Unmodified	_KETTLRELK_					0	0	0		ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000008086|O76039-1|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3329467773438	2	559.332413	1116.65027	1.771	0.0009906	-1.3136	-0.00073476	0.45741	0.00025584	559.3317627420142	13.784	0.25563	13.784	13.735	13.991	0					7	5	2	0	0	0	0.16806	1	3448	3448		65.465	0.30814	1	293530			20127	1013	12712	12769	20428	20428					0.09661372568848492
KETTYYDVL	9	Unmodified	_KETTYYDVL_					0	0	0		DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant	DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.2825317382812	2	566.282054	1130.54956	0.26089	0.00014774	0.57299	0.00032447	0.83388	0.00047221	566.7839946324154	39.973	0.23141	39.973	39.844	40.075	0					13	8	2	0	0	0	0.38666	1	15230	15230		42.864	0.46813	1	120970			20128	823	12713	12770	20429	20429					-0.010497042046836214
KETVEPVKRKQ	11	Unmodified	_KETVEPVKRKQ_					0	0	0			REV__ENSG00000146540|ENST00000397098|C7orf50	REV__ENSG00000146540|ENST00000397098|C7orf50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.26800537109375	3	447.933143	1340.7776	-0.10733	-4.8075E-05	0.62823	0.00028141	0.52091	0.00023333	448.2678376210252	12.73	0.14447	12.73	12.642	12.787	0					5	3	2	0	0	0	0.64323	1	2946	2946		33.039	1.4051	1	85471	+		20129	15317	12714	12771	20430	20430					0.12084093443036181
KETVNQTR	8	Unmodified	_KETVNQTR_					0	0	0			REV__nc|ENSG00000173826|Q9H252-3|KCNH6	REV__nc|ENSG00000173826|Q9H252-3|KCNH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2642517089844	2	488.26453	974.514508	-0.3786	-0.00018486	-0.091109	-4.4485E-05	-0.46971	-0.00022934	488.2643156758067	12.794	0.15674	12.794	12.711	12.868	0					6	4	2	0	0	0	0.2498	1	2776	2776		101.6	5.7855	1	270260	+		20130	16535	12715	12772	20431	20431					0.02623097778052852
KETYGLYLQ	9	Unmodified	_KETYGLYLQ_					0	0	0			REV__ENST00000357847.8_1_6:143654424-143660800:+|nuORF	REV__ENST00000357847.8_1_6:143654424-143660800:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.7933349609375	2	557.792589	1113.57063	1.2947	0.00072215	-0.70057	-0.00039078	0.59408	0.00033137	557.7921545360491	27.879	0.31199	27.879	27.807	28.119	0					19	11	2	0	0	0	0.3269	1	8671	8671		47.96	3.5823	1	556590	+		20131	18117	12716	12773	20432	20432					0.01838305894852965
KEVADAIRL	9	Unmodified	_KEVADAIRL_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;nc|ENSG00000078808|Q9BRK5-4|SDF4;nc|ENSG00000078808|Q9BRK5-3|SDF4;nc|ENSG00000078808|Q9BRK5-6|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.80120849609375	2	507.800749	1013.58694	0.93572	0.00047516	-0.6507	-0.00033043	0.28502	0.00014473	507.80022698501125	30.974	0.13437	30.974	30.848	30.982	0					5	3	2	0	0	0	0.12834	1	11217	11217		72.879	14.097	1	82856			20132	1608	12717	12774	20433	20433					0.08069431851606623
KEVADAIRL	9	Unmodified	_KEVADAIRL_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;nc|ENSG00000078808|Q9BRK5-4|SDF4;nc|ENSG00000078808|Q9BRK5-3|SDF4;nc|ENSG00000078808|Q9BRK5-6|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.80078125	2	507.800749	1013.58694	0.17265	8.7673E-05	-0.35715	-0.00018136	-0.1845	-9.369E-05	507.80082828892404	30.942	0.13797	30.942	30.827	30.965	0					5	3	2	0	0	0	0.10506	1	11614	11614		78.264	20.034	1	108360			20133	1608	12717	12774	20434	20434					0.08069431851606623
KEVADAIRL	9	Unmodified	_KEVADAIRL_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;nc|ENSG00000078808|Q9BRK5-4|SDF4;nc|ENSG00000078808|Q9BRK5-3|SDF4;nc|ENSG00000078808|Q9BRK5-6|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.8007507324219	2	507.800749	1013.58694	-0.14114	-7.1671E-05	0.44099	0.00022394	0.29985	0.00015227	507.80077053765365	30.89	0.26262	30.89	30.78	31.043	0					8	5	2	0	0	0	0.19952	1	11499	11499		61.691	4.9702	1	204160			20134	1608	12717	12774	20435	20435					0.08069431851606623
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.8140869140625	2	529.813856	1057.61316	1.1528	0.00061077	-0.43527	-0.00023061	0.71753	0.00038016	529.8136569914523	29.07	0.19125	29.07	28.978	29.169	0					12	7	2	0	0	0	0.25761	1	9125	9125		54.722	10.345	1	169420			20135	2899	12718	12775	20436	20436					0.0866570102307378
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8154296875	2	529.813856	1057.61316	5.1882	0.0027488	-3.4303	-0.0018174	1.7579	0.00093138	529.8118526267483	29.085	0.20543	29.085	28.996	29.202	0					12	8	2	0	0	0	0.14673	1	9438	9438		68.626	10.38	1	57435			20136	2899	12718	12775	20437	20437					0.0866570102307378
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8135986328125	2	529.813856	1057.61316	0.9073	0.0004807	-0.024351	-1.2901E-05	0.88295	0.0004678	529.8138230784459	29.3	0.37101	29.3	29.211	29.582	0					16	8	3	0	0	0	0.061298	1	10826	10826		91.265	6.1044	1	610640			20137	2899	12718	12775	20438	20438					0.0866570102307378
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8148803710938	2	529.813856	1057.61316	1.8521	0.00098129	0.22944	0.00012156	2.0816	0.0011028	529.8140568329136	29.124	0.17093	29.124	29.026	29.196	0					8	5	2	0	0	0	0.13109	1	9750	9750		72.243	15.809	1	103160			20138	2899	12718	12775	20439	20439					0.0866570102307378
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8141479492188	2	529.813856	1057.61316	0.7308	0.00038719	0.29861	0.00015821	1.0294	0.00054539	529.8140154536634	29.266	0.4071	29.266	29.159	29.566	0					16	8	3	0	0	0	0.0079272	1	10687	10687		145.46	35.982	1	1471600			20139	2899	12718	12775	20440	20440					0.0866570102307378
KEVAVGTRKA	10	Unmodified	_KEVAVGTRKA_					0	0	0			REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B	REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8197021484375	2	529.819473	1057.62439	1.6336	0.00086552	-1.1688	-0.00061923	0.46485	0.00024629	529.8190479295915	27.45	0.37241	27.45	27.289	27.662	0					20	7	4	0	0	0	0.56931	1	9838	9838		37.812	2.6595	1	857600	+		20140	16365	12719	12776	20441	20441					0.09788523117254044
KEVDILRM	8	Unmodified	_KEVDILRM_					0	0	0		nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;ENSG00000151065|ENST00000280665|DCP1B;ENST00000537725.1_1_12:2070525-2113588:-|nuORF	nc|ENSG00000151065|Q8IZD4-2|DCP1B	nc|ENSG00000151065|Q8IZD4-2|DCP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2839660644531	2	502.283877	1002.5532	0.70759	0.00035541	-0.92587	-0.00046505	-0.21828	-0.00010964	502.2835457507878	33.584	0.29589	33.584	33.456	33.752	0					13	7	3	0	0	0	0.37144	1	12423	12423		74.255	15.473	1	212690			20141	4945	12720	12777	20442	20442					0.05202687088217317
KEVDIYTV	8	Unmodified	_KEVDIYTV_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.760498046875	2	483.760758	965.506963	0.049489	2.3941E-05	-0.90201	-0.00043636	-0.85252	-0.00041241	483.76049513868367	34.831	0.20237	34.831	34.739	34.941	0					19	9	3	0	0	0	0.53424	1	11392	11392		56.721	3.3696	1	182520			20142	3474	12721	12778	20443	20443					0.022829454577731667
KEVDLIPKV	9	Unmodified	_KEVDLIPKV_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;ENST00000492914.1_1_10:51829372-51845265:+|nuORF	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.821533203125	2	520.82115	1039.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.723	1	35.723	35.223	36.223	0								0	0	0	0.088368	1	13815	13815		75.043	27.084	1				20143	1930	12722	12779	20444	20444					0.10951773171245804
KEVDVSKQL	9	Unmodified	_KEVDVSKQL_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN;ENST00000560673.1_1_15:40675453-40678696:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.298095703125	2	523.298039	1044.58152	0.088099	4.6102E-05	0.76608	0.00040089	0.85417	0.00044699	523.2983084189674	23.442	0.22443	23.442	23.34	23.565	0					9	5	2	0	0	0	0.017421	1	7768	7768		126.24	13.832	1	776840			20144	3573	12723	12780	20445	20445					0.06101708269147821
KEVDVSKQL	9	Unmodified	_KEVDVSKQL_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN;ENST00000560673.1_1_15:40675453-40678696:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2979125976562	2	523.298039	1044.58152	-1.2877	-0.00067386	1.7944	0.00093901	0.50669	0.00026515	523.2989672810832	23.195	0.14536	23.195	23.152	23.297	0					6	3	2	0	0	0	0.19952	1	7051	7051		61.691	5.2575	1	85929			20145	3573	12723	12780	20446	20446					0.06101708269147821
KEVDVSKQL	9	Unmodified	_KEVDVSKQL_					0	0	0		ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN;ENST00000560673.1_1_15:40675453-40678696:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2982788085938	2	523.298039	1044.58152	3.4132	0.0017861	-1.7796	-0.00093126	1.6336	0.00085486	523.2968864976207	23.361	0.26622	23.361	23.252	23.518	0					9	5	2	0	0	0	0.076532	1	7925	7925		85.862	3.1113	1	764810			20146	3573	12723	12780	20447	20447					0.06101708269147821
KEVEERPAP	9	Unmodified	_KEVEERPAP_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7803344726562	2	527.780013	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.101	1	17.101	16.601	17.601	0								0	0	0	0.36056	1	4014	4014		22.58	1.6327	1				20147	3642	12724	12781	20448	20448					0.02084251092287559
KEVEERPAP	9	Unmodified	_KEVEERPAP_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7808837890625	2	527.780013	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.379	1	17.379	16.879	17.879	0								0	0	0	0.015103	1	4892	4892		104.01	28.97	1				20148	3642	12724	12781	20449	20449					0.02084251092287559
KEVEERPAP	9	Unmodified	_KEVEERPAP_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.780517578125	2	527.780013	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.133	1	17.133	16.633	17.633	0								0	0	0	0.34101	1	4235	4235		27.047	0.25122	1				20149	3642	12724	12781	20450	20450					0.02084251092287559
KEVEERPAP	9	Unmodified	_KEVEERPAP_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7800903320312	2	527.780013	1053.54547	0.674	0.00035572	0.081803	4.3174E-05	0.7558	0.0003989	527.7800152369094	17.302	0.16036	17.302	17.192	17.353	0					5	3	2	0	0	0	0.19952	1	4981	4981		61.691	17.314	1	189010			20150	3642	12724	12781	20451	20451					0.02084251092287559
KEVEERPAP	9	Unmodified	_KEVEERPAP_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7808227539062	2	527.780013	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.316	1	17.316	16.816	17.816	0								0	0	0	0.0016356	1	4973	4973		123.21	38.047	1				20151	3642	12724	12781	20452	20452					0.02084251092287559
KEVEKKPP	8	Unmodified	_KEVEKKPP_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant;DNAJC13|p.W1286C|1|0.47|ENSG00000138246|chr3:132494176-132494176|G/T|missense_variant	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.78497314453125	2	477.784567	953.554582	-0.081987	-3.9172E-05	-0.19959	-9.5361E-05	-0.28158	-0.00013453	477.7843648536221	22.809	0.16668	22.809	22.713	22.879	0					9	5	2	0	0	0	0.65276	1	6498	6498		40.573	1.3198	1	186870			20152	4241	12725	12782	20453	20453					0.07594644448613508
KEVENVRK	8	Unmodified	_KEVENVRK_					0	0	0		tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.29119873046875	2	501.290548	1000.56654	-0.38852	-0.00019476	0.2203	0.00011043	-0.16822	-8.4326E-05	501.29075492613384	15.286	0.21625	15.286	15.213	15.429	0					17	6	4	0	0	0	0.24699	1	3385	3385		95.815	2.6197	1	3180000			20153	22716	12726	12783	20454	20454					0.06628261191804086
KEVEQFTQV	9	Unmodified	_KEVEQFTQV_					0	0	0		ENST00000565031.1_1_16:2011477-2011732:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	ENST00000565031.1_1_16:2011477-2011732:+|nuORF	ENST00000565031.1_1_16:2011477-2011732:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.287841796875	2	554.287671	1106.56079	0.60505	0.00033537	-2.5393	-0.0014075	-1.9342	-0.0010721	554.2871893976549	30.873	0.22392	30.873	30.692	30.916	0					11	5	3	0	0	0	0.10821	1	11186	11186		77.533	17.603	1	338580			20154	4418	12727	12784	20455	20455					0.011771178894605328
KEVFDFIQ	8	Unmodified	_KEVFDFIQ_					0	0	0		tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2698974609375	2	513.26875	1024.52295	-0.013687	-7.0249E-06	2.2569	0.0011584	2.2432	0.0011514	513.2700105349004	15.24	0.17353	15.24	15.161	15.335	0					11	5	3	0	0	0	0.66095	1	3283	3283		39.253	2.0937	1	1610800			20155	22641	12728	12785	20456	20456					0.011666516946661432
KEVFLAQPV	9	Unmodified	_KEVFLAQPV_					0	0	0		ENST00000376007.8_1_6:31588511-31590634:+|nuORF	ENST00000376007.8_1_6:31588511-31590634:+|nuORF	ENST00000376007.8_1_6:31588511-31590634:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.8009643554688	2	515.800217	1029.58588	0.22821	0.00011771	0.62762	0.00032373	0.85583	0.00044144	515.8008797435218	36.143	0.59461	36.143	35.891	36.486	0					46	29	2	0	0	0	0.24334	1	11877	11877		56.434	20.816	1	305050			20156	9038	12729	12786	20457	20457					0.07227217482704873
KEVFNILQ	8	Unmodified	_KEVFNILQ_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2841491699219	2	495.784567	989.554582	-0.36626	-0.00018159	-1.1818	-0.00058594	-1.5481	-0.00076752	495.7845423716963	34.553	0.86109	34.553	34.132	34.993	0					63	22	7	0	0	0	0.64746	1	12838	12838		24.519	1.4767	1	4455100			20157	2411	12730	12787	20458	20458					0.05938644448622199
KEVIIHRL	8	Unmodified	_KEVIIHRL_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.3215637207031	2	504.321651	1006.62875	0.77087	0.00038877	-1.1992	-0.00060478	-0.42833	-0.00021602	504.32113717719653	30.312	0.53683	30.312	30.087	30.624	0					23	13	2	0	0	0	0.59773	1	10995	10995		49.442	1.5259	1	158640			20158	5462	12731	12788	20459	20459					0.12570032330802405
KEVKREVK	8	Unmodified	_KEVKREVK_					0	0	0		tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2860412597656	2	508.316566	1014.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.811	1	12.811	12.311	13.311	0								0	0	0	1.7419	1	2820	2820		27.882	0	1				20159	22581	12732	12789	20460	20460					0.1118542460557137
KEVKYDSSL	9	Unmodified	_KEVKYDSSL_					0	0	0		CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant;ENSG00000185015|ENST00000321764|CA13;CA13|p.R46Q|1|0.09|ENSG00000185015|chr8:85250839-85250839|G/A|missense_variant	CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant	CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7832641601562	2	534.782222	1067.54989	1.0916	0.00058376	0.047044	2.5158E-05	1.1386	0.00060892	534.782423308933	18.766	0.2648	18.766	18.676	18.941	0					12	6	4	0	0	0	0.35021	1	4973	4973		45.972	1.8554	1	362600			20160	340	12733	12790	20461	20461					0.01881715515196447
KEVLIKAE	8	Unmodified	_KEVLIKAE_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2864685058594	2	465.286943	928.559333	0.076579	3.5631E-05	-0.45367	-0.00021108	-0.37709	-0.00017545	465.28665754866154	32.308	0.15172	32.308	32.233	32.385	0					12	6	2	0	0	0	0.41	1	10429	10429		69.628	0	1	254930	+		20161	21717	12734	12791	20462	20462					0.09219528591370363
KEVLIKAE	8	Unmodified	_KEVLIKAE_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2865295410156	2	465.286943	928.559333	-0.52375	-0.0002437	-0.014667	-6.8245E-06	-0.53842	-0.00025052	465.2868521770758	32.358	0.15061	32.358	32.277	32.428	0					7	4	2	0	0	0	0.36488	1	11238	11238		75.043	0	1	189120	+		20162	21717	12734	12791	20463	20463					0.09219528591370363
KEVLLFPA	8	Unmodified	_KEVLLFPA_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.77691650390625	2	458.778754	915.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.589	1	20.589	20.089	21.089	0								0	0	0	1.7419	1	5538	5538		42.474	8.9589	1				20163	1371	12735	12792	20464	20464					0.08180447425274906
KEVLQQAVGLR	11	Unmodified	_KEVLQQAVGLR_					0	0	0			REV__nc|ENSG00000165138|Q68DC2-4|ANKS6	REV__nc|ENSG00000165138|Q68DC2-4|ANKS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.8711547851562	2	620.872237	1239.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.932	1	28.932	28.432	29.432	0								0	0	0	0.44488	1	10658	10658		27.047	4.4677	1		+		20164	16024	12736	12793	20465	20465					0.11964439242842673
KEVNMHISL	9	Oxidation (M)	_KEVNM(Oxidation (M))HISL_		KEVNM(1)HISL		KEVNM(56)HISL	0	0	1		ENST00000490635.1_1_X:54026257-54040884:-|nuORF	ENST00000490635.1_1_X:54026257-54040884:-|nuORF	ENST00000490635.1_1_X:54026257-54040884:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8585510253906	3	362.858586	1085.55393	0.73626	0.00026716	-0.6181	-0.00022428	0.11816	4.2876E-05	362.85838048545014	16.983	0.1293	16.983	16.9	17.029	0					9	3	4	0	0	0	0.24334	1	4708	4708		56.434	15.007	1	421270			20165	10063	12737	12794	20466	20466		403			0.014574817372704274
KEVSSATNAL	10	Unmodified	_KEVSSATNAL_					0	0	0		SNRPA|p.V133Wfs*15|1|0.34|ENSG00000077312|chr19:40759576-40759576|C/-|frameshift_variant;ENST00000598923.1_1_19:41257313-41268988:+|nuORF;ENSG00000077312|ENST00000243563|SNRPA	SNRPA|p.V133Wfs*15|1|0.34|ENSG00000077312|chr19:40759576-40759576|C/-|frameshift_variant	SNRPA|p.V133Wfs*15|1|0.34|ENSG00000077312|chr19:40759576-40759576|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.27215576171875	2	510.272021	1018.52949	-0.31921	-0.00016289	-0.23537	-0.0001201	-0.55458	-0.00028299	510.2719613098701	24.695	0.097639	24.695	24.636	24.734	0					5	3	2	0	0	0	0.62149	1	7587	7587		31.634	6.5083	1	90494			20166	1580	12738	12795	20467	20467					0.020965448553852184
KEVTEYLG	8	Unmodified	_KEVTEYLG_					0	0	0		ENST00000555263.1_1_14:96755932-96756910:-|nuORF	ENST00000555263.1_1_14:96755932-96756910:-|nuORF	ENST00000555263.1_1_14:96755932-96756910:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.263427734375	2	469.745108	937.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.893	1	24.893	24.393	25.393	0								0	0	0	1.7419	1	8767	8767		37.159	1.5408	1				20167	10656	12739	12796	20468	20468					0.00442372423674442
KEVVEDTSL	9	Unmodified	_KEVVEDTSL_					0	0	0			REV__ENST00000580997.1_1_17:7468099-7469096:+|nuORF	REV__ENST00000580997.1_1_17:7468099-7469096:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2669982910156	2	510.266404	1018.51826	1.0462	0.00053382	-0.61031	-0.00031142	0.43584	0.00022239	510.266408799592	13.052	0.080084	13.052	12.994	13.074	0					5	3	2	0	0	0	0.14603	1	2535	2535		68.787	2.3575	1	78743	+		20168	15793	12740	12797	20469	20469					0.009737227612504284
KEVVHTVSL	9	Unmodified	_KEVVHTVSL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.295166015625	2	506.295299	1010.57605	0.83721	0.00042387	-0.71169	-0.00036032	0.12552	6.355E-05	506.29492080489575	26.371	0.22012	26.371	26.287	26.507	0					12	5	3	0	0	0	0.18416	1	9099	9099		63.534	8.7575	1	480920			20169	6946	12741	12798	20470	20470					0.0711802947733986
KEVVHTVSL	9	Unmodified	_KEVVHTVSL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.295166015625	2	506.295299	1010.57605	-0.24476	-0.00012392	0.20429	0.00010343	-0.040475	-2.0493E-05	506.2954054464642	26.306	0.26681	26.306	26.151	26.417	0					9	5	3	0	0	0	0.048471	1	9292	9292		95.815	21.56	1	388340			20170	6946	12741	12798	20471	20471					0.0711802947733986
KEVWTRLK	8	Unmodified	_KEVWTRLK_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3180541992188	2	530.319109	1058.62366	1.6454	0.00087261	-3.0903	-0.0016388	-1.4448	-0.00076621	530.3173928549272	16.039	0.4681	16.039	15.832	16.3	0					22	9	4	0	0	0	0.59773	1	4348	4348		49.442	1.5259	1	1170600			20171	7594	12742	12799	20472	20472					0.09669728468156791
KEWLLSDI	8	Unmodified	_KEWLLSDI_					0	0	0		SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant;ENSG00000091138|ENST00000340010|SLC26A3	SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant	SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.27874755859375	2	502.276575	1002.5386	2.9252	0.0014693	0.55776	0.00028015	3.483	0.0017494	502.27683731975515	40.574	0.45673	40.574	40.469	40.926	0					12	8	2	0	0	0	0.68432	1	16107	16107		35.618	35.618	1	595360			20172	1854	12743	12800	20473	20473					0.03742938211712499
KEWNDSTSV	9	Unmodified	_KEWNDSTSV_					0	0	0		ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2540893554688	2	533.246003	1064.47745	0.28935	0.00015429	1.1519	0.00061424	1.4412	0.00076854	533.2466476700259	26.602	0.11756	26.602	26.543	26.661	0					4	2	2	0	0	0	0.13726	2	9530	9530;9551		70.816	16.094	1	445570			20173	2111	12744	12801	20474;20475	20474					-0.05220618558382739
KEYAVNEV	8	Unmodified	_KEYAVNEV_					0	0	0		ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000185787|ENST00000426013|MORF4L1	ENSG00000185787|ENST00000426013|MORF4L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2422180175781	2	476.242732	950.470912	0.62936	0.00029973	-1.4386	-0.00068513	-0.80925	-0.0003854	476.24201482517316	26.176	0.20964	26.176	26.067	26.277	0					8	4	2	0	0	0	0.2592	1	9352	9352		96.034	0.21844	1	660640			20174	7105	12745	12802	20476	20476					-0.006305117191004683
KEYESELAN	9	Unmodified	_KEYESELAN_					0	0	0			REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7523803710938	2	541.753661	1081.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.293	1	20.293	19.793	20.793	0								0	0	0	0.27939	1	5678	5678		39.253	2.8061	1		+		20175	21788	12746	12803	20477	20477					-0.044717517611843505
KEYFKKAD	8	Unmodified	_KEYFKKAD_					0	0	0			REV__tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	REV__tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7740478515625	2	514.7742	1027.53385	3.2372	0.0016665	-1.6996	-0.00087489	1.5377	0.00079157	514.7721485933768	21.942	0.46349	21.942	21.807	22.27	0					19	9	4	0	0	0	0.14501	1	7243	7243		176.09	15.265	1	1918100	+		20176	21952	12747	12804	20478	20478					0.021180540689329064
KEYGQTMTV	9	Unmodified	_KEYGQTMTV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7553100585938	2	528.755149	1055.49575	0.51163	0.00027053	0.85142	0.00045019	1.363	0.00072072	528.7554477197929	27.049	0.12661	27.049	26.969	27.096	0					8	4	2	0	0	0	0.44949	1	8302	8302		37.508	1.8899	1	108050			20177	3046	12748	12805	20479	20479					-0.029781999080341848
KEYGQTMTV	9	Unmodified	_KEYGQTMTV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7554931640625	2	528.755149	1055.49575	0.11004	5.8182E-05	0.18601	9.8351E-05	0.29604	0.00015653	528.7553460449947	27.291	0.30443	27.291	27.196	27.501	0					14	7	3	0	0	0	0.090954	1	9522	9522		81.525	35.553	1	969670			20178	3046	12748	12805	20480	20480					-0.029781999080341848
KEYGQTMTV	9	Unmodified	_KEYGQTMTV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.755859375	2	528.755149	1055.49575	0.47371	0.00025048	-0.22502	-0.00011898	0.24869	0.0001315	528.7552297038753	27.066	0.1518	27.066	26.979	27.131	0					9	5	2	0	0	0	0.50761	1	8578	8578		31.634	3.5528	1	94359			20179	3046	12748	12805	20481	20481					-0.029781999080341848
KEYGQTMTV	9	Unmodified	_KEYGQTMTV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.75537109375	2	528.755149	1055.49575	0.28588	0.00015116	-0.22404	-0.00011846	0.061839	3.2698E-05	528.7551373023567	27.296	0.21854	27.296	27.186	27.405	0					12	4	4	0	0	0	0.063171	1	9882	9882		90.601	13.283	1	511630			20180	3046	12748	12805	20482	20482					-0.029781999080341848
KEYKQLAK	8	Unmodified	_KEYKQLAK_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.669	1	31.669	31.169	32.169	0								0	0	0	1.7419	1	11865	11865		23.523	0	1		+		20181	15450	12749	12806	20483	20483					0.0781033333993264
KEYLFYLN	8	Unmodified	_KEYLFYLN_					0	0	0		IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2847290039062	2	545.2844	1088.55425	1.9228	0.0010485	-1.3802	-0.00075261	0.54256	0.00029585	545.2833210267102	13.786	0.15302	13.786	13.687	13.84	0					10	3	4	0	0	0	0.51384	1	3447	3447		58.782	4.0056	1	306500			20182	7424	12750	12807	20484	20484					0.01351224728773559
KEYPTNAGGL	10	Unmodified	_KEYPTNAGGL_					0	0	0			REV__UBE2T|p.F51Lfs*3|1|0.15|ENSG00000077152|chr1:202335015-202335015|A/-|frameshift_variant	REV__UBE2T|p.F51Lfs*3|1|0.15|ENSG00000077152|chr1:202335015-202335015|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2669677734375	2	525.266739	1048.51892	0.58825	0.00030899	-0.28208	-0.00014816	0.30618	0.00016082	525.266546232988	24.781	0.23581	24.781	24.677	24.913	0					13	8	2	0	0	0	0.32758	1	7629	7629		64.207	12.872	1	283030	+		20183	13256	12751	12808	20485	20485					-0.00339437799038933
KEYQKAIK	8	Unmodified	_KEYQKAIK_					0	0	0		tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2988586425781	2	504.297842	1006.58113	0.6404	0.00032295	-0.078578	-3.9627E-05	0.56182	0.00028332	504.29782190172676	23.873	1.0539	23.873	23.298	24.352	0					41	35	2	0	0	0	0.57171	1	6848	6848		52.937	0	1	139510			20184	22851	12752	12809	20486	20486					0.07810333339944009
KEYQKAIK	8	Unmodified	_KEYQKAIK_					0	0	0		tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.29791259765625	2	504.297842	1006.58113	0.77525	0.00039096	-0.17136	-8.6415E-05	0.6039	0.00030454	504.2979915256678	18.869	3.2491	18.869	18.683	21.932	0					248	75	5	0	0	0	0.25987	1	6846	6846		95.815	0	1	528220000			20185	22851	12752	12809	20487	20487					0.07810333339944009
KEYQKAIK	8	Unmodified	_KEYQKAIK_					0	0	0		tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	0.53459	0.00017991	-1.4096	-0.00047438	-0.87502	-0.00029448	336.53446196098747	18.81	2.0865	18.81	18.677	20.764	0					123	42	5	0	0	0	0.78142	1	5992	5992		19.104	0	1	149780000			20186	22851	12752	12809	20488	20488					0.07810333339944009
KEYQKAIK	8	Unmodified	_KEYQKAIK_					0	0	0		tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.297607421875	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.817	1	22.817	22.317	23.317	0								0	0	0	1.7419	1	6862	6862		49.442	0	1				20187	22851	12752	12809	20489	20489					0.07810333339944009
KEYQKAIK	8	Unmodified	_KEYQKAIK_					0	0	0		tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.204	1	26.204	25.704	26.704	0								0	0	0	1.7419	1	9228	9228		34.173	0	1				20188	22851	12752	12809	20490	20490					0.07810333339944009
KEYSWPKK	8	Unmodified	_KEYSWPKK_					0	0	0		SUFU|p.E466K|1|0.5|ENSG00000107882|chr10:102630096-102630096|G/A|missense_variant	SUFU|p.E466K|1|0.5|ENSG00000107882|chr10:102630096-102630096|G/A|missense_variant	SUFU|p.E466K|1|0.5|ENSG00000107882|chr10:102630096-102630096|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2908935546875	2	533.290017	1064.56548	0.28967	0.00015448	3.2879	0.0017534	3.5775	0.0019079	533.2909351068988	11.645	0.12471	11.645	11.568	11.693	0					8	3	3	0	0	0	0.79709	1	2443	2443		15.642	0.77694	1	379470			20189	22499	12753	12810	20491	20491					0.03578046822894976
KEYVGIVRL	9	Unmodified	_KEYVGIVRL_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8271484375	2	538.826766	1075.63898	2.0203	0.0010886	-0.35957	-0.00019375	1.6607	0.00089485	538.8260185498401	34.997	0.13268	34.997	34.954	35.087	0					5	3	2	0	0	0	0.27249	1	13100	13100		52.937	6.9847	1	239080			20190	3678	12754	12811	20492	20492					0.10418595265377917
KEYVGIVRL	9	Unmodified	_KEYVGIVRL_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.827392578125	2	538.826766	1075.63898	1.9248	0.0010371	-0.64502	-0.00034755	1.2798	0.00068958	538.8262930519514	35.02	0.33436	35.02	34.924	35.258	0					14	9	2	0	0	0	0.21263	1	13556	13556		60.118	24.5	1	197180			20191	3678	12754	12811	20493	20493					0.10418595265377917
KEYVGIVRL	9	Unmodified	_KEYVGIVRL_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8272094726562	2	538.826766	1075.63898	2.041	0.0010997	0.79482	0.00042827	2.8358	0.001528	538.8261636691153	34.939	0.314	34.939	34.815	35.129	0					10	6	2	0	0	0	0.12834	1	13448	13448		72.879	23.438	1	292640			20192	3678	12754	12811	20494	20494					0.10418595265377917
KFARYYLA	8	Unmodified	_KFARYYLA_					0	0	0		nc|ENSG00000174669|Q14542-3|SLC29A2;nc|ENSG00000174669|Q14542-4|SLC29A2;ENSG00000174669|ENST00000357440|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2899169921875	2	516.287277	1030.56	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.54	1	26.54	26.04	27.04	0								0	0	0	1.7419	1	8560	8560		28.254	1.4582	1				20193	6505	12755	12812	20495	20495					0.04594368031075646
KFCAEKKKH	9	Unmodified	_KFCAEKKKH_					0	0	0			REV__ACVR2A|p.R438Efs*19|1|0.34|ENSG00000121989|chr2:147926116-147926117|-/A|frameshift_variant	REV__ACVR2A|p.R438Efs*19|1|0.34|ENSG00000121989|chr2:147926116-147926117|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.3123779296875	2	559.810593	1117.60663	1.063	0.00059509	-1.5974	-0.00089423	-0.53435	-0.00029913	560.3113553806877	22.038	0.18479	22.038	21.943	22.127	0					8	4	2	0	0	0	0.30951	1	6506	6506		49.442	3.4896	1	71487	+		20194	12060	12756	12813	20496	20496					0.05253484590730295
KFCILINRSV	10	Unmodified	_KFCILINRSV_					0	0	0			REV__ENST00000546044.1_1_12:122372233-122387003:+|nuORF	REV__ENST00000546044.1_1_12:122372233-122387003:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.8468627929688	2	596.847176	1191.6798	0.13469	8.0387E-05	0.044419	2.6511E-05	0.17911	0.0001069	596.8472433393038	32.541	0.18174	32.541	32.465	32.646	0					15	8	2	0	0	0	0.60147	1	10519	10519		44.377	20.854	1	129160	+		20195	20167	12757	12814	20497	20497					0.09162613313333168
KFDDVAQGSA	10	Unmodified	_KFDDVAQGSA_					0	0	0			REV__ENST00000486444.1_1_3:101568430-101571632:+|nuORF	REV__ENST00000486444.1_1_3:101568430-101571632:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2518920898438	2	519.248546	1036.48254	3.3559	0.0017426	2.417	0.001255	5.7729	0.0029976	519.2499411758948	13.185	0.25593	13.185	13.08	13.336	0					10	5	3	0	0	0	0.48965	1	3013	3013		46.457	7.2039	1	1321600	+		20196	15245	12758	12815	20498	20498					-0.034243146957578574
KFDPMVVR	8	Unmodified	_KFDPMVVR_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2746887207031	2	496.273312	990.532072	0.73872	0.00036661	1.878	0.00093199	2.6167	0.0012986	496.27418712399196	16.621	0.26723	16.621	16.413	16.68	0					10	5	2	0	0	0	0.25143	1	4796	4796		98.629	0.047388	1	2581800	+		20197	16725	12759	12816	20499	20499					0.03642721779351632
KFEDAKLAA	9	Unmodified	_KFEDAKLAA_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.774658203125	2	496.7742	991.533846	0.54818	0.00027232	-0.20225	-0.00010047	0.34593	0.00017185	496.7743025658568	24.511	0.14081	24.511	24.462	24.602	0					5	3	2	0	0	0	0.25761	1	8271	8271		54.722	7.065	1	144320			20198	5038	12760	12817	20500	20500					0.037740540689469526
KFEDAKLAA	9	Unmodified	_KFEDAKLAA_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.77410888671875	2	496.7742	991.533846	-0.031325	-1.5562E-05	-0.54473	-0.00027061	-0.57605	-0.00028617	496.7739119644461	24.469	0.16648	24.469	24.41	24.577	0					7	3	3	0	0	0	0.056004	1	8579	8579		93.143	43.702	1	252250			20199	5038	12760	12817	20501	20501					0.037740540689469526
KFEQAAQL	8	Unmodified	_KFEQAAQL_					0	0	0			REV__ENST00000377710.9_1_20:17950486-17950636:+|nuORF	REV__ENST00000377710.9_1_20:17950486-17950636:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7528381347656	2	467.753267	933.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.338	1	25.338	24.838	25.838	0								0	0	0	1.7419	1	8980	8980		64.207	0	1		+		20200	18737	12761	12818	20502	20502					0.022574983804247495
KFEQLTYT	8	Unmodified	_KFEQLTYT_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2644653320312	2	515.266207	1028.51786	-0.1185	-6.1058E-05	-3.7718	-0.0019435	-3.8903	-0.0020045	515.2646613504834	18.997	0.20522	18.997	18.859	19.065	0					13	6	3	0	0	0	0.37378	1	5058	5058		73.975	13.003	1	270390	+		20201	12727	12762	12819	20503	20503					0.004743478320506256
KFESVAAAI	9	Unmodified	_KFESVAAAI_					0	0	0			REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1	REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.26318359375	2	468.263468	934.512382	-0.51379	-0.00024059	0.11746	5.5001E-05	-0.39633	-0.00018559	468.2634790649972	31.926	0.31849	31.926	31.818	32.136	0					13	6	3	0	0	0	0.087582	1	11998	11998		82.305	7.2617	1	519990	+		20202	22072	12763	12820	20504	20504					0.04250669040231969
KFFGGRGGY	9	Unmodified	_KFFGGRGGY_					0	0	0			REV__ENST00000519948.3_1_12:74934905-74935118:+|nuORF	REV__ENST00000519948.3_1_12:74934905-74935118:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.75299072265625	2	494.753601	987.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.857	1	39.857	39.357	40.357	0								0	0	0	0.35507	1	15691	15691		24.203	3.7209	1		+		20203	19946	12764	12821	20505	20505					-0.0015966217985123876
KFFIDPNEV	9	Unmodified	_KFFIDPNEV_					0	0	0		CREB3L4|p.L71F|1|0.17|ENSG00000143578|chr1:153968966-153968966|C/T|missense_variant	CREB3L4|p.L71F|1|0.17|ENSG00000143578|chr1:153968966-153968966|C/T|missense_variant	CREB3L4|p.L71F|1|0.17|ENSG00000143578|chr1:153968966-153968966|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.786376953125	2	554.787307	1107.56006	0.13894	7.7084E-05	0.18035	0.00010005	0.31929	0.00017714	554.7874608787865	35.074	0.95041	35.074	34.612	35.563	0					92	43	3	0	0	0	0.50858	1	11981	11981		31.53	2.3803	1	131440			20204	689	12765	12822	20506	20506					0.010583232404314913
KFFKRFYM	8	Unmodified	_KFFKRFYM_					0	0	0			REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.8112182617188	2	583.812605	1165.61066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.51	1	19.51	19.01	20.01	0								0	0	0	1.7419	1	5313	5313		20.482	1.3783	1		+		20205	14048	12766	12823	20507	20507					0.03447574084430016
KFGASAILGV	10	Unmodified	_KFGASAILGV_					0	0	0		ENO1|p.N109S|1|0.22|ENSG00000074800|chr1:8867235-8867235|T/C|missense_variant	ENO1|p.N109S|1|0.22|ENSG00000074800|chr1:8867235-8867235|T/C|missense_variant	ENO1|p.N109S|1|0.22|ENSG00000074800|chr1:8867235-8867235|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.78680419921875	2	481.78711	961.559667	0.081821	3.942E-05	-0.59301	-0.0002857	-0.51119	-0.00024628	481.7869210062123	26.94	0.10746	26.94	26.872	26.979	0					5	3	2	0	0	0	0.65213	1	8238	8238		27.882	1.0861	1	39673			20206	918	12767	12824	20508	20508					0.07734948311247081
KFGISQHAG	9	Unmodified	_KFGISQHAG_					0	0	0			REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7525634765625	2	472.751059	943.487565	2.4278	0.0011477	0.75139	0.00035522	3.1792	0.001503	472.7513873967773	12.815	0.15948	12.815	12.756	12.916	0					5	3	2	0	0	0	0.30951	1	2830	2830		49.442	10.635	1	609330	+		20207	12049	12768	12825	20509	20509					0.01356033957517866
KFGQTDFKK	9	Unmodified	_KFGQTDFKK_					0	0	0		ENST00000466764.5_1_X:48436119-48436305:+|nuORF	ENST00000466764.5_1_X:48436119-48436305:+|nuORF	ENST00000466764.5_1_X:48436119-48436305:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8024291992188	2	549.800749	1097.58694	3.7611	0.0020679	-0.84806	-0.00046627	2.913	0.0016016	549.8003425304744	15.389	0.45055	15.389	15.28	15.731	0					20	9	5	0	0	0	0.12239	1	4054	4054		74.255	6.7614	1	9061700			20208	9790	12769	12826	20510	20510					0.04205431851596586
KFGSSVSEGA	10	Unmodified	_KFGSSVSEGA_					0	0	0			REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7392578125	2	484.737814	967.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.721	1	17.721	17.221	18.221	0								0	0	0	0.11266	1	5050	5050		77.318	0.54344	1		+		20209	15155	12770	12827	20511	20511					-0.023956997244681588
KFHSLFKPN	9	Unmodified	_KFHSLFKPN_					0	0	0			REV__ENST00000580966.1_1_17:18149569-18150009:-|nuORF	REV__ENST00000580966.1_1_17:18149569-18150009:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.311767578125	2	559.311284	1116.60801	0.51496	0.00028802	0.10061	5.6273E-05	0.61557	0.0003443	559.3112914817307	22.332	1.4945	22.332	22.197	23.691	0					88	35	3	0	0	0	0.26904	1	7562	7562		53.351	7.3792	1	14981000	+		20210	16711	12771	12828	20512	20512					0.05437441951130495
KFIDATVQ	8	Unmodified	_KFIDATVQ_					0	0	0			REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.25701904296875	2	461.255643	920.496732	2.5519	0.0011771	0.1666	7.6844E-05	2.7185	0.0012539	461.25580705133706	27.128	0.32144	27.128	27.019	27.34	0					12	6	3	0	0	0	0.2678	1	9688	9688		93.195	2.8256	1	870310	+		20211	20414	12772	12829	20513	20513					0.03330382523188291
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.7955932617188	2	543.795132	1085.57571	1.162	0.0006319	-0.53416	-0.00029047	0.62786	0.00034143	543.7948520838895	30.257	0.51989	30.257	30.132	30.652	0					43	19	3	0	0	0	0.010427	2	9588	9588;9747		140.11	60.4	1	3035800			20212	2002	12773	12830	20514;20515	20514					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8658447265625	3	362.865847	1085.57571	0.10458	3.7949E-05	-0.25968	-9.4227E-05	-0.1551	-5.6279E-05	362.8656501976398	30.234	0.22002	30.234	30.132	30.352	0					11	7	2	0	0	0	0.25716	1	9614	9614		61.691	13.09	1	140760			20213	2002	12773	12830	20516	20516					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.79541015625	2	543.795132	1085.57571	0.35225	0.00019155	-0.37178	-0.00020217	-0.019527	-1.0619E-05	543.7948195148855	30.523	0.56193	30.523	30.354	30.916	0					41	13	4	0	0	0	0.0037134	2	10981	10981;11168		164.46	68.265	1	19393000			20214	2002	12773	12830	20517;20518	20517					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.86572265625	3	362.865847	1085.57571	0.47866	0.00017369	-0.46321	-0.00016808	0.015456	5.6085E-06	362.865655346431	30.522	0.48244	30.522	30.394	30.877	0					26	11	4	0	0	0	0.46194	1	11005	11005		43.651	10.611	1	772810			20215	2002	12773	12830	20519	20519					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.795654296875	2	543.795132	1085.57571	0.39541	0.00021502	-0.21536	-0.00011711	0.18005	9.791E-05	543.7949142356628	30.284	0.55342	30.284	30.166	30.719	0					73	19	5	0	0	0	0.0063888	2	9906	9906;10055		152.06	61.691	1	17662000			20216	2002	12773	12830	20520;20521	20520					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7952270507812	2	543.795132	1085.57571	0.38351	0.00020855	-0.15332	-8.3377E-05	0.23019	0.00012518	543.7953826681138	30.861	0.74686	30.861	30.713	31.46	0					40	27	2	0	0	0	0.49718	1	10359	10359		32.751	4.4963	1	82480			20217	2002	12773	12830	20522	20522					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.796630859375	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.271	1	38.271	37.771	38.771	0								0	0	0	0.3245	1	15008	15008		30.318	0	1				20218	2002	12773	12830	20523	20523					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7954711914062	2	543.795132	1085.57571	1.0876	0.00059142	-0.80963	-0.00044027	0.27796	0.00015115	543.7945193650552	30.294	1.0303	30.294	30.145	31.175	0					77	27	5	0	0	0	0.0037134	4	10272	10272;10287;10444;10633		164.46	68.265	1	11996000			20219	2002	12773	12830	20524;20525;20526;20527	20524					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.795654296875	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.622	1	31.622	31.122	32.122	0								0	0	0	0.22075	1	10910	10910		47.96	13.787	1				20220	2002	12773	12830	20528	20528					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7957153320312	2	543.795132	1085.57571	-1.4925	-0.00081163	1.7466	0.00094979	0.25406	0.00013816	543.7959556519726	30.286	0.54955	30.286	30.175	30.724	0					52	14	5	0	0	0	0.010427	2	10264	10264;10437		140.11	60.4	1	14354000			20221	2002	12773	12830	20529;20530	20529					0.03634609757477847
KFIVDIEALT	10	Unmodified	_KFIVDIEALT_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.8302612304688	2	574.831714	1147.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.864	1	21.864	21.364	22.364	0								0	0	0	0.32041	1	6347	6347		47.657	14.845	1		+		20222	16534	12774	12831	20531	20531					0.08095738480074033
KFKAGGGVAAG	11	Unmodified	_KFKAGGGVAAG_					0	0	0			REV__ENST00000574735.1_1_17:5012529-5015337:-|nuORF	REV__ENST00000574735.1_1_17:5012529-5015337:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.77587890625	2	481.774534	961.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.449	1	17.449	16.949	17.949	0								0	0	0	0.31933	1	5036	5036		49.442	1.482	1		+		20223	20407	12775	12832	20532	20532					0.05220893508669633
KFKDNLWQS	9	Unmodified	_KFKDNLWQS_					0	0	0			REV__GSTM4|p.E49D|1|0.1|ENSG00000168765|chr1:109657249-109657249|A/C|missense_variant	REV__GSTM4|p.E49D|1|0.1|ENSG00000168765|chr1:109657249-109657249|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.3042602539062	2	583.303655	1164.59276	0.55958	0.0003264	0.23275	0.00013576	0.79233	0.00046217	583.3038595381682	31.478	0.1329	31.478	31.433	31.566	0					5	3	2	0	0	0	0.41958	1	10852	10852		25.574	0	1	82771	+		20224	20711	12776	12833	20533	20533					0.017045303632812647
KFKNMADMFS	10	Oxidation (M)	_KFKNMADM(Oxidation (M))FS_		KFKNM(0.01)ADM(0.99)FS		KFKNM(-20)ADM(20)FS	0	0	1			REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.1898498535156	3	412.191348	1233.55222	-0.43905	-0.00018097	-3.6294	-0.001496	-4.0684	-0.001677	412.19011673971653	24.876	0.30532	24.876	24.771	25.076	0					14	6	4	0	0	0	0.31894	1	8625	8625		65.157	12.068	2	1877500	+		20225	13289	12777	12834	20534	20534		513			-0.055218953430085094
KFKPIAYDSN	10	Unmodified	_KFKPIAYDSN_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.8088989257812	2	591.811313	1181.60807	-0.059257	-3.5069E-05	-1.4436	-0.00085437	-1.5029	-0.00088943	591.8088757957802	23.788	0.26863	23.788	23.679	23.947	0					10	5	3	0	0	0	0.63851	1	8254	8254		18.262	0	1	209230	+		20226	13149	12778	12835	20535	20535					0.024533971604796534
KFKQELNHQ	9	Unmodified	_KFKQELNHQ_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.3106079101562	2	586.314554	1170.61456	0.091078	5.34E-05	-3.5767	-0.0020971	-3.4856	-0.0020437	586.3128156722923	13.003	0.82428	13.003	12.92	13.744	0					49	22	5	0	0	0	0.048471	1	2847	2847		68.787	6.6794	1	35762000			20227	5613	12779	12836	20536	20536					0.036073351118375285
KFKQELNHQ	9	Unmodified	_KFKQELNHQ_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.3128662109375	2	586.314554	1170.61456	-1.738	-0.001019	-1.3943	-0.00081749	-3.1323	-0.0018365	586.3137691098262	12.769	0.13441	12.769	12.711	12.845	0					17	7	3	0	0	0	0.11898	1	2493	2493		49.442	5.0644	1	672720			20228	5613	12779	12836	20537	20537					0.036073351118375285
KFKSPSVAVVQ	11	Unmodified	_KFKSPSVAVVQ_					0	0	0		ENSG00000115840|ENST00000422440|SLC25A12;nc|ENSG00000115840|O75746-2|SLC25A12;ENST00000472070.1_1_2:172641786-172644464:-|nuORF	ENSG00000115840|ENST00000422440|SLC25A12	ENSG00000115840|ENST00000422440|SLC25A12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.3543090820312	2	595.350606	1188.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.215	1	15.215	14.715	15.715	0								0	0	0	0.36259	1	3962	3962		33.922	4.3709	1				20229	2940	12780	12837	20538	20538					0.09986249465578112
KFKYTVVGK	9	Unmodified	_KFKYTVVGK_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3223876953125	2	535.32386	1068.63317	0.29115	0.00015586	-2.203	-0.0011793	-1.9118	-0.0010234	535.3223425469096	24.087	0.11778	24.087	24.029	24.146	0					4	2	2	0	0	0	0.38666	1	8399	8399		42.864	3.6114	1	122580	+		20230	15866	12781	12838	20539	20539					0.10159496753726671
KFLDEPLQP	9	Unmodified	_KFLDEPLQP_					0	0	0			REV__ENSG00000132953|ENST00000255305|XPO4	REV__ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.794677734375	2	543.795132	1085.57571	-1.4919	-0.00081131	1.603	0.00087172	0.1111	6.0413E-05	543.7958192800658	30.928	1.3544	30.928	30.786	32.14	0					50	37	2	0	0	0	0.21263	1	10828	10828		60.118	1.8883	1	77933	+		20231	14687	12782	12839	20540	20540					0.03634609757477847
KFLFGLVI	8	Unmodified	_KFLFGLVI_					0	0	0			REV__nc|ENSG00000292357|P15509-8|CSF2RA	REV__nc|ENSG00000292357|P15509-8|CSF2RA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.79705810546875	2	468.799489	935.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.418	1	36.418	35.918	36.918	0								0	0	0	1.7419	1	11944	11944		26.796	2.5934	1		+		20232	17390	12783	12840	20541	20541					0.11405628184616035
KFLGHKQNR	9	Unmodified	_KFLGHKQNR_					0	0	0			REV__nc|ENSG00000165973|Q92832-2|NELL1	REV__nc|ENSG00000165973|Q92832-2|NELL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.3265991210938	2	564.325257	1126.63596	1.2357	0.00069735	1.9121	0.0010791	3.1479	0.0017764	564.3263744271792	17.298	0.46407	17.298	17.229	17.693	0					30	15	3	0	0	0	0.61124	1	4088	4088		7.1934	3.7833	1	153550	+		20233	16080	12784	12841	20542	20542					0.07770764931228769
KFLKVPAPK	9	Unmodified	_KFLKVPAPK_					0	0	0		ENST00000527368.5_1_11:66512338-66529578:+|nuORF	ENST00000527368.5_1_11:66512338-66529578:+|nuORF	ENST00000527368.5_1_11:66512338-66529578:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.3355712890625	2	514.33677	1026.65899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.334	1	18.334	17.834	18.834	0								0	0	0	0.31838	1	4764	4764		11.511	0	1				20234	10389	12785	12842	20543	20543					0.14672390995974638
KFLNPRVVQ	9	Unmodified	_KFLNPRVVQ_					0	0	0			REV__ENST00000281146.9_1_4:130014860-130014995:+|nuORF	REV__ENST00000281146.9_1_4:130014860-130014995:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.5586242675781	3	367.557348	1099.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.941	1	11.941	11.441	12.441	0								0	0	0	0.3119	1	2410	2410		32.812	7.2384	1		+		20235	18128	12786	12843	20544	20544					0.10437417359503343
KFLQTFLSQ	9	Unmodified	_KFLQTFLSQ_					0	0	0		nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;ENSG00000103599|ENST00000335894|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	371.21209716796875	3	371.209725	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.127	1	16.127	15.627	16.627	0								0	0	0	0.15687	1	3621	3621		58.23	0	1				20236	2253	12787	12844	20545	20545					0.05646602511410492
KFMANIKK	8	Unmodified	_KFMANIKK_					0	0	0		tr|U7SWT0|U7SWT0_FUSNUDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrKPE=3SV=1	tr|U7SWT0|U7SWT0_FUSNUDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrKPE=3SV=1	tr|U7SWT0|U7SWT0_FUSNUDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrKPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.29241943359375	2	490.291505	978.568457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.12	1	12.12	11.62	12.62	0								0	0	0	1.7419	1	2650	2650		40.573	0	1				20237	22861	12788	12845	20546	20546					0.07831598676068552
KFNGTKHTLDE	11	Unmodified	_KFNGTKHTLDE_					0	0	0			REV__CCDC61|p.R103Pfs*27|1|0.29|ENSG00000104983|chr19:46006626-46006627|-/G|frameshift_variant	REV__CCDC61|p.R103Pfs*27|1|0.29|ENSG00000104983|chr19:46006626-46006627|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	645.3267822265625	2	645.327859	1288.64116	-0.57973	-0.00037411	-0.61377	-0.00039608	-1.1935	-0.0007702	645.3272900073277	29.641	0.16822	29.641	29.582	29.75	0					5	3	2	0	0	0	0.35529	1	11013	11013		56.434	5.2411	1	59874	+		20238	12365	12789	12846	20547	20547					0.008389792125399254
KFNKINYTL	9	Unmodified	_KFNKINYTL_					0	0	0		tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.8245239257812	2	570.824224	1139.63389	0.066616	3.8026E-05	0.2234	0.00012752	0.29001	0.00016555	570.8245244876673	21.104	0.31217	21.104	20.995	21.307	0					12	6	3	0	0	0	0.33044	1	6956	6956		47.657	5.2612	1	387390			20239	22666	12790	12847	20548	20548					0.06966291402750358
KFNNARHSL	9	Unmodified	_KFNNARHSL_					0	0	0			REV__ENSG00000162426|ENST00000471889|SLC45A1	REV__ENSG00000162426|ENST00000471889|SLC45A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7958374023438	2	543.793789	1085.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.708	1	41.708	41.208	42.208	0								0	0	0	0.27939	1	16607	16607		39.253	5.0803	1		+		20240	15812	12791	12848	20549	20549					0.03366199143169979
KFNQTEEVSVE	11	Unmodified	_KFNQTEEVSVE_					0	0	0		ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000502937.5_1_6:43174127-43181466:+|nuORF;ENST00000505172.5_1_6:43174127-43181391:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2129821777344	3	437.213863	1308.61976	-0.55908	-0.00024444	-1.9436	-0.00084978	-2.5027	-0.0010942	437.21316116358935	14.703	0.42034	14.703	14.609	15.029	0					13	8	3	0	0	0	0.62108	1	3714	3714		31.068	0	1	225940			20241	2753	12792	12849	20550	20550					-0.022204506068874252
KFPSLAGK	8	Unmodified	_KFPSLAGK_					0	0	0		CASP8|p.C345F|1|0.39|ENSG00000064012|chr2:201285047-201285047|G/T|missense_variant	CASP8|p.C345F|1|0.39|ENSG00000064012|chr2:201285047-201285047|G/T|missense_variant	CASP8|p.C345F|1|0.39|ENSG00000064012|chr2:201285047-201285047|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.2552795410156	2	424.255446	846.496338	-0.021472	-9.1096E-06	-0.42663	-0.000181	-0.4481	-0.00019011	424.2552406992062	24.038	0.30821	24.038	23.926	24.234	0					16	7	3	0	0	0	0.24714	1	7423	7423		106.42	1.1464	1	1129300			20242	379	12793	12850	20551	20551					0.06695007593987157
KFQGSVTLK	9	Unmodified	_KFQGSVTLK_					0	0	0		ZNF25|p.P7S|1|0.12|ENSG00000175395|chr10:37957543-37957543|G/A|missense_variant	ZNF25|p.P7S|1|0.12|ENSG00000175395|chr10:37957543-37957543|G/A|missense_variant	ZNF25|p.P7S|1|0.12|ENSG00000175395|chr10:37957543-37957543|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.29779052734375	2	504.297842	1006.58113	0.11934	6.0182E-05	-0.61591	-0.0003106	-0.49657	-0.00025042	504.29768567812005	18.645	3.1466	18.645	18.539	21.685	0					180	74	4	0	0	0	0.17854	1	5946	5946		64.207	5.4253	1	157190000			20243	23147	12794	12851	20552	20552					0.07810333339944009
KFQIVDDTI	9	Unmodified	_KFQIVDDTI_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;ADGRV1|p.Y1610Tfs*36|1|0.42|ENSG00000164199|chr5:90672616-90672616|T/-|frameshift_variant;ADGRV1|p.A1698Nfs*28|1|0.13|ENSG00000164199|chr5:90674214-90674215|-/GAACATATATATTC|frameshift_variant;ADGRV1|p.S1982Ffs*2|1|0.3|ENSG00000164199|chr5:90683859-90683860|-/T|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ADGRV1|p.S2670Rfs*9|1|0.05|ENSG00000164199|chr5:90697000-90697001|-/GCCCAAAATAATT|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.790771484375	2	539.792589	1077.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.613	1	11.613	11.113	12.113	0								0	0	0	0.35899	1	2273	2273		23.042	2.0956	1				20244	5669	12795	12852	20553	20553					0.03494305894855643
KFQKKGLE	8	Unmodified	_KFQKKGLE_					0	0	0			REV__ENST00000463722.5_1_7:99697202-99698956:-|nuORF	REV__ENST00000463722.5_1_7:99697202-99698956:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2924499511719	2	489.292559	976.570566	0.78367	0.00038344	-1.3811	-0.00067578	-0.59747	-0.00029234	489.29181702657974	21.701	0.13944	21.701	21.653	21.792	0					8	3	3	0	0	0	0.44433	1	6969	6969		65.803	1.5959	1	417110	+		20245	16128	12796	12853	20554	20554					0.08134350685531899
KFQQSEQVL	9	Unmodified	_KFQQSEQVL_					0	0	0			REV__nc|ENSG00000149639|O94964-1|MTCL2	REV__nc|ENSG00000149639|O94964-1|MTCL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7935791015625	2	553.795663	1105.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.847	1	11.847	11.347	12.347	0								0	0	0	0.30504	1	2525	2525		34.173	1.3601	1		+		20246	15431	12797	12854	20555	20555					0.028208241263882883
KFQVTMRGL	9	Oxidation (M)	_KFQVTM(Oxidation (M))RGL_		KFQVTM(1)RGL		KFQVTM(40)RGL	0	0	1		FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant;ENSG00000177294|ENST00000321535|FBXO39	FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant	FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.871826171875	3	365.870826	1094.59065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.834	1	16.834	16.334	17.334	0								0	0	0	0.27521	1	4891	4891		40.058	15.826	1				20247	6656	12798	12855	20556	20556		274			0.04713778353811904
KFQVTMRGL	9	Oxidation (M)	_KFQVTM(Oxidation (M))RGL_		KFQVTM(1)RGL		KFQVTM(48)RGL	0	0	1		FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant;ENSG00000177294|ENST00000321535|FBXO39	FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant	FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.8719787597656	3	365.870826	1094.59065	1.0183	0.00037256	2.1056	0.00077036	3.1238	0.0011429	365.87164353879916	16.788	0.20978	16.788	16.73	16.94	0					6	4	2	0	0	0	0.3269	1	4731	4731		47.96	12.807	1	2120200			20248	6656	12798	12855	20557	20557		274			0.04713778353811904
KFRCAGCAKGF	11	Unmodified	_KFRCAGCAKGF_					0	0	0		ENST00000493497.1_1_20:32376535-32379320:+|nuORF;nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000131061|ENST00000375200|ZNF341	ENST00000493497.1_1_20:32376535-32379320:+|nuORF	ENST00000493497.1_1_20:32376535-32379320:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.291015625	2	594.294253	1186.57395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.939	1	33.939	33.439	34.439	0								0	0	0	0.4249	1	11965	11965		31.53	1.2121	1				20249	3697	12799	12856	20558	20558					-0.011870458037947174
KFRIITTE	8	Unmodified	_KFRIITTE_					0	0	0			REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2975158691406	2	504.297842	1006.58113	1.0276	0.0005182	-0.77591	-0.00039129	0.25166	0.00012691	504.29740073466377	39.992	0.354	39.992	39.732	40.086	0					21	12	2	0	0	0	0.7126	1	15701	15701		31.955	1.4512	1	75471	+		20250	21588	12800	12857	20559	20559					0.07810333339944009
KFRKYILQ	8	Unmodified	_KFRKYILQ_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.336669921875	2	548.337301	1094.66005	1.6332	0.00089552	-3.8076	-0.0020878	-2.1744	-0.0011923	548.3350159728117	19.751	0.13335	19.751	19.704	19.837	0					6	4	2	0	0	0	0.63077	1	5174	5174		25.45	6.0902	1	93410			20251	6986	12801	12858	20560	20560					0.11650605364911826
KFRNTLAEI	9	Unmodified	_KFRNTLAEI_					0	0	0			REV__UACA|p.K370T|1|0.18|ENSG00000137831|chr15:70676515-70676515|T/G|missense_variant	REV__UACA|p.K370T|1|0.18|ENSG00000137831|chr15:70676515-70676515|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3140869140625	2	546.314023	1090.61349	-1.5011	-0.00082009	1.6145	0.00088203	0.11337	6.1936E-05	546.3147265645201	30.829	1.0986	30.829	30.68	31.778	0					83	29	5	0	0	0	0.37197	1	10849	10849		44.117	3.3386	1	16027000	+		20252	22251	12802	12859	20561	20561					0.07181120742961866
KFRTRLISSSA	11	Unmodified	_KFRTRLISSSA_					0	0	0			REV__ENST00000262982.2_1_20:47706183-47706276:+|nuORF	REV__ENST00000262982.2_1_20:47706183-47706276:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	633.3689575195312	2	633.369861	1264.72517	0.78911	0.0004998	-1.5418	-0.00097653	-0.7527	-0.00047673	633.368647053528	53.059	0.42904	53.059	52.942	53.371	0					41	26	2	0	0	0	0.79221	1	15706	15706		16.717	1.3843	1	103060	+		20253	18037	12803	12860	20562	20562					0.10339555100085818
KFSAINGL	8	Unmodified	_KFSAINGL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH11|p.C1849Sfs*8|1|0.05|ENSG00000105877|chr7:21683868-21683869|-/CTAAAATTCTCATAAATAG|frameshift_variant;DNAH11|p.K1250Nfs*43|1|0.63|ENSG00000105877|chr7:21606522-21606522|A/-|frameshift_variant;DNAH11|p.C1251Mfs*5|1|0.41|ENSG00000105877|chr7:21606521-21606522|-/A|frameshift_variant;DNAH11|p.Q945Kfs*4|1|0.32|ENSG00000105877|chr7:21599946-21599946|T/-|frameshift_variant;DNAH11|p.K873Nfs*4|1|0.31|ENSG00000105877|chr7:21591523-21591523|A/-|frameshift_variant;DNAH11|p.N833Tfs*2|1|0.17|ENSG00000105877|chr7:21591404-21591404|A/-|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2448425292969	2	425.245078	848.475603	-0.22004	-9.3572E-05	-0.1784	-7.5866E-05	-0.39845	-0.00016944	425.2449656667233	25.673	0.29131	25.673	25.578	25.87	0					18	6	4	0	0	0	0.39542	1	7729	7729		71.378	12.596	1	1121200			20254	812	12804	12861	20563	20563					0.045304172143460164
KFSPNTSQF	9	Unmodified	_KFSPNTSQF_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.2620239257812	2	528.261456	1054.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.486	1	30.486	29.986	30.986	0								0	0	0	0.084509	1	9720	9720		76.17	15.198	1				20255	5089	12805	12862	20564	20564					-0.016714204534764576
KFSPNTSQF	9	Unmodified	_KFSPNTSQF_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2617797851562	2	528.261456	1054.50836	0.10836	5.7242E-05	0.54491	0.00028785	0.65327	0.0003451	528.2616345149119	30.734	0.3196	30.734	30.596	30.916	0					15	7	4	0	0	0	0.035106	1	11123	11123		104.01	26.696	1	585930			20256	5089	12805	12862	20565	20565					-0.016714204534764576
KFSPNTSQF	9	Unmodified	_KFSPNTSQF_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.2617797851562	2	528.261456	1054.50836	0.49543	0.00026172	-0.90358	-0.00047733	-0.40815	-0.00021561	528.2612002600355	30.51	0.1281	30.51	30.432	30.561	0					7	4	2	0	0	0	0.095583	1	10029	10029		80.455	11.668	1	75447			20257	5089	12805	12862	20566	20566					-0.016714204534764576
KFSSTSTASY	10	Unmodified	_KFSSTSTASY_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7560424804688	2	539.756204	1077.49785	0.93507	0.00050471	-0.93996	-0.00050735	-0.0048893	-2.639E-06	539.7556781859442	21.026	0.26397	21.026	20.945	21.209	0					18	7	4	0	0	0	0.58189	1	5727	5727		36.447	1.246	1	1431500			20258	14025	12806	12863	20567	20567					-0.03779447898568833
KFSSTSTASY	10	Unmodified	_KFSSTSTASY_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7566528320312	2	539.756204	1077.49785	0.26135	0.00014106	1.085	0.00058565	1.3464	0.00072671	539.7567148056546	21.348	0.36355	21.348	21.247	21.61	0					23	8	4	0	0	0	0.36476	1	6774	6774		60.118	15.587	1	8316500			20259	14025	12806	12863	20568	20568					-0.03779447898568833
KFSSTSTASY	10	Unmodified	_KFSSTSTASY_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7562866210938	2	539.756204	1077.49785	0.30503	0.00016464	0.40432	0.00021823	0.70935	0.00038288	539.7563551011518	21.248	0.2135	21.248	21.144	21.357	0					13	4	4	0	0	0	0.44601	1	7029	7029		51.193	5.2204	1	2832600			20260	14025	12806	12863	20569	20569					-0.03779447898568833
KFSTEHRTK	9	Unmodified	_KFSTEHRTK_					0	0	0		DNAJC13|p.E92K|1|0.4|ENSG00000138246|chr3:132447450-132447450|G/A|missense_variant	DNAJC13|p.E92K|1|0.4|ENSG00000138246|chr3:132447450-132447450|G/A|missense_variant	DNAJC13|p.E92K|1|0.4|ENSG00000138246|chr3:132447450-132447450|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.3087158203125	2	567.306729	1132.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.54	1	12.54	12.04	13.04	0								0	0	0	0.31222	1	2847	2847		25.574	0	1				20261	827	12807	12864	20570	20570					0.03791048594803215
KFTFLSMQPS	10	Unmodified	_KFTFLSMQPS_					0	0	0		ENST00000480178.1_1_X:9716007-9727427:-|nuORF	ENST00000480178.1_1_X:9716007-9727427:-|nuORF	ENST00000480178.1_1_X:9716007-9727427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.3042602539062	2	593.302267	1184.58998	1.5459	0.00091717	1.7005	0.0010089	3.2464	0.0019261	593.3033850539676	30.845	0.22714	30.845	30.77	30.997	0					10	5	2	0	0	0	0.46128	1	11573	11573		49.536	5.1589	1	411330			20262	9948	12808	12865	20571	20571					0.005069389141226566
KFTIFVFGQ	9	Unmodified	_KFTIFVFGQ_					0	0	0			REV__ENST00000406003.2_1_12:10264431-10264902:+|nuORF	REV__ENST00000406003.2_1_12:10264431-10264902:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.8720703125	3	362.870932	1085.59097	3.1271	0.0011347	-0.51478	-0.0001868	2.6123	0.00094792	362.8707983341347	33.625	0.52264	33.625	33.466	33.989	0					23	11	3	0	0	0	0.43488	1	12788	12788		38.754	0.039523	1	1824400	+		20263	18973	12809	12866	20572	20572					0.05159521345331086
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.794921875	2	512.794935	1023.57532	1.08	0.00055384	-0.82051	-0.00042075	0.25953	0.00013309	512.7944443400571	28.007	0.21267	28.007	27.965	28.178	0					13	5	3	0	0	0	0.14578	1	9877	9877		68.846	13.342	1	529290			20264	5332	12810	12867	20573	20573					0.0644723482827203
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.794677734375	2	512.794935	1023.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.776	1	27.776	27.276	28.276	0								0	0	0	0.12732	1	8890	8890		65.157	21.04	1				20265	5332	12810	12867	20574	20574					0.0644723482827203
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7948608398438	2	512.794935	1023.57532	1.275	0.00065383	-1.0295	-0.00052791	0.24555	0.00012592	512.7943280736376	28.004	0.48434	28.004	27.897	28.381	0					18	10	3	0	0	0	0.021015	1	10223	10223		120.31	32.552	1	802180			20266	5332	12810	12867	20575	20575					0.0644723482827203
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.794921875	2	512.794935	1023.57532	1.4356	0.00073617	-1.1834	-0.00060682	0.25225	0.00012935	512.7942225010958	27.951	0.46467	27.951	27.846	28.311	0					18	9	3	0	0	0	0.061298	1	10081	10081		91.265	9.0247	1	1201900			20267	5332	12810	12867	20576	20576					0.0644723482827203
KFTSLGYLR	9	Unmodified	_KFTSLGYLR_					0	0	0			REV__EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	REV__EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.2109375	3	362.209836	1083.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.359	1	19.359	18.859	19.859	0								0	0	0	0.37517	1	5228	5228		18.262	0	1		+		20268	14964	12811	12868	20577	20577					0.06922022231265146
KFTSWSQHR	9	Unmodified	_KFTSWSQHR_					0	0	0			REV__nc|ENSG00000121753|O60241-4|ADGRB2	REV__nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	588.7990112304688	2	588.799072	1175.58359	0.16663	9.8112E-05	0.24342	0.00014333	0.41005	0.00024144	588.7992189987337	16.837	0.42919	16.837	16.743	17.172	0					37	16	3	0	0	0	0.30841	1	3888	3888		42.396	6.7778	1	488430	+		20269	14316	12812	12869	20578	20578					0.0028218179761552165
KFTVQTKVR	9	Unmodified	_KFTVQTKVR_					0	0	0		ENST00000531503.5_1_11:65603108-65617212:+|nuORF;ENST00000524729.1_1_11:65601488-65617212:+|nuORF	ENST00000531503.5_1_11:65603108-65617212:+|nuORF	ENST00000531503.5_1_11:65603108-65617212:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8381958007812	2	553.837665	1105.66078	1.6258	0.00090043	-0.51497	-0.00028521	1.1108	0.00061522	553.8371608266995	15.97	0.36549	15.97	15.864	16.23	0					16	7	4	0	0	0	0.14578	1	4485	4485		71.877	22.436	1	555950			20270	10349	12813	12870	20579	20579					0.11217400013924816
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__nc|ENSG00000163564|Q6K0P9-4|PYHIN1	REV__nc|ENSG00000163564|Q6K0P9-4|PYHIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.3571166992188	2	611.354834	1220.69511	2.9496	0.0018033	-0.6003	-0.000367	2.3493	0.0014363	611.3543856768288	52.667	0.55114	52.667	52.382	52.933	0					57	33	2	0	0	0	0.74306	1	20381	20381		23.523	0.48021	1	99870	+		20271	15895	12814	12871	20580	20580					0.0935948011056098
KFVNKSYLL	9	Unmodified	_KFVNKSYLL_					0	0	0		nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1	nc|ENSG00000144736|Q6PI26-2|SHQ1	nc|ENSG00000144736|Q6PI26-2|SHQ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.3297729492188	2	556.329142	1110.64373	1.8095	0.0010067	-1.1937	-0.0006641	0.61577	0.00034257	556.3284583676667	32.506	0.25639	32.506	32.424	32.68	0					11	6	2	0	0	0	0.28897	1	11935	11935		51.193	18.38	1	164860			20272	4636	12815	12872	20581	20581					0.09283479408145467
KFVNKSYLL	9	Unmodified	_KFVNKSYLL_					0	0	0		nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1	nc|ENSG00000144736|Q6PI26-2|SHQ1	nc|ENSG00000144736|Q6PI26-2|SHQ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3297119140625	2	556.329142	1110.64373	1.1444	0.00063667	-0.06362	-3.5394E-05	1.0808	0.00060128	556.3288852751298	32.43	0.31909	32.43	32.321	32.64	0					13	6	3	0	0	0	0.27123	1	12236	12236		53.089	12.311	1	420690			20273	4636	12815	12872	20582	20582					0.09283479408145467
KFVTEPDVA	9	Unmodified	_KFVTEPDVA_					0	0	0			REV__ENSG00000278289|ENST00000620654|CT45A6	REV__ENSG00000278289|ENST00000620654|CT45A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2663879394531	2	503.266207	1004.51786	-0.052985	-2.6665E-05	1.2465	0.00062735	1.1936	0.00060068	503.26657099626846	15.976	0.074354	15.976	15.929	16.003	0					5	3	2	0	0	0	0.39215	1	3565	3565		42.396	3.1433	1	78631	+		20274	17638	12816	12873	20583	20583					0.01578347832048621
KFWFSYVYPYQ	11	Unmodified	_KFWFSYVYPYQ_					0	0	0		tr|U7T3F7|U7T3F7_FUSNUDUF234domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00369PE=4SV=1	tr|U7T3F7|U7T3F7_FUSNUDUF234domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00369PE=4SV=1	tr|U7T3F7|U7T3F7_FUSNUDUF234domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00369PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	764.36767578125	2	764.368995	1526.72344	-1.655	-0.001265	-0.18843	-0.00014403	-1.8434	-0.0014091	764.368504745077	19.902	0.11851	19.902	19.843	19.961	0					4	2	2	0	0	0	0.75295	1	6383	6383		22.58	0	1	119210			20275	22968	12817	12874	20584	20584					-0.01885498708520572
KFWNFVEASQ	10	Unmodified	_KFWNFVEASQ_					0	0	0		UGGT1|p.D546Mfs*27|1|0.03|ENSG00000136731|chr2:128138768-128138769|-/AT|frameshift_variant;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1	UGGT1|p.D546Mfs*27|1|0.03|ENSG00000136731|chr2:128138768-128138769|-/AT|frameshift_variant	UGGT1|p.D546Mfs*27|1|0.03|ENSG00000136731|chr2:128138768-128138769|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	628.8121337890625	2	628.308938	1254.60332	3.154	0.0019817	-0.56712	-0.00035632	2.5869	0.0016254	628.3087554976131	42.578	0.40553	42.578	42.463	42.868	0					34	11	5	0	0	0	0.31613	1	16978	16978		65.465	5.5346	1	1134700			20276	4103	12818	12875	20585	20585					-0.0137948698229593
KFYFRKGTA	9	Unmodified	_KFYFRKGTA_					0	0	0			REV__ENSG00000016490|ENST00000394711|CLCA1	REV__ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3113403320312	2	559.311284	1116.60801	-0.1015	-5.6769E-05	0.58277	0.00032595	0.48128	0.00026918	559.3115557058519	22.245	1.5092	22.245	22.136	23.646	0					74	30	3	0	0	0	0.22377	1	7656	7656		58.782	11.125	1	7320200	+		20277	12926	12819	12876	20586	20586					0.05437441951130495
KFYHCINT	8	Carbamidomethyl (C)	_KFYHC(Carbamidomethyl (C))INT_	KFYHC(1)INT		KFYHC(79)INT		0	1	0		nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7593994140625	2	541.758027	1081.5015	2.0281	0.0010988	0.45833	0.0002483	2.4865	0.0013471	541.7583160819995	24.302	0.3145	24.302	24.196	24.511	0					19	6	4	0	0	0	0.32815	1	8504	8504		79.451	79.451	1	1952500			20278	4607	12820	12877	20587	20587	194				-0.03599056605708029
KGAAERGPRR	10	Unmodified	_KGAAERGPRR_					0	0	0		ENST00000561100.1_3_15:40212954-40213002:-|nuORF	ENST00000561100.1_3_15:40212954-40213002:-|nuORF	ENST00000561100.1_3_15:40212954-40213002:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.3164672851562	2	549.317963	1096.62137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.349	1	19.349	18.849	19.849	0								0	0	0	0.37129	1	4989	4989		39.253	6.4404	1				20279	10703	12821	12878	20588	20588					0.0769269278309821
KGAAGFSIGK	10	Unmodified	_KGAAGFSIGK_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.26885986328125	2	468.269084	934.523616	-1.0959	-0.00051318	0.72352	0.0003388	-0.3724	-0.00017438	468.2693927976109	32.552	0.28131	32.552	32.464	32.745	0					25	11	3	0	0	0	0.46128	1	10860	10860		49.536	1.6204	1	359030			20280	4595	12822	12879	20589	20589					0.05373491134378128
KGAAIHISK	9	Unmodified	_KGAAIHISK_					0	0	0		MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-2|MIA3;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant;MIA3|p.N746Kfs*10|1|0.35|ENSG00000154305|chr1:222629450-222629451|-/A|frameshift_variant;MIA3|p.V974Sfs*4|1|0.36|ENSG00000154305|chr1:222630134-222630135|-/A|frameshift_variant;MIA3|p.M993Nfs*3|1|0.25|ENSG00000154305|chr1:222630191-222630192|-/A|frameshift_variant;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.D527V|1|0.27|ENSG00000154305|chr1:222628800-222628800|A/T|missense_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7848205566406	2	462.784902	923.55525	-0.14567	-6.7415E-05	-0.14116	-6.5327E-05	-0.28683	-0.00013274	462.7848458403263	16.871	0.16184	16.871	16.818	16.98	0					5	3	2	0	0	0	0.047855	1	4920	4920		96.034	21.779	1	257440			20281	5083	12823	12880	20590	20590					0.0904148388832482
KGAAIHISK	9	Unmodified	_KGAAIHISK_					0	0	0		MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-2|MIA3;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant;MIA3|p.N746Kfs*10|1|0.35|ENSG00000154305|chr1:222629450-222629451|-/A|frameshift_variant;MIA3|p.V974Sfs*4|1|0.36|ENSG00000154305|chr1:222630134-222630135|-/A|frameshift_variant;MIA3|p.M993Nfs*3|1|0.25|ENSG00000154305|chr1:222630191-222630192|-/A|frameshift_variant;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.D527V|1|0.27|ENSG00000154305|chr1:222628800-222628800|A/T|missense_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.78485107421875	2	462.784902	923.55525	-0.47146	-0.00021818	0.14702	6.8037E-05	-0.32444	-0.00015015	462.78503773201055	16.852	0.11078	16.852	16.796	16.907	0					4	2	2	0	0	0	0.010427	1	4760	4760		140.11	54.951	1	460800			20282	5083	12823	12880	20591	20591					0.0904148388832482
KGAAKKTAFP	10	Unmodified	_KGAAKKTAFP_					0	0	0			REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.2060241699219	3	340.206315	1017.59712	0.222	7.5525E-05	-0.51646	-0.0001757	-0.29447	-0.00010018	340.20613973728877	28.93	0.13469	28.93	28.814	28.949	0					7	4	2	0	0	0	0.65895	1	9078	9078		27.047	1.4733	1	63962	+		20283	21868	12824	12881	20592	20592					0.08902039576844345
KGACLQCLK	9	Unmodified	_KGACLQCLK_					0	0	0			REV__CON__Q29443	REV__CON__Q29443	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2599792480469	2	482.259348	962.504143	0.56033	0.00027022	-0.050833	-2.4515E-05	0.50949	0.00024571	482.2594584958373	11.421	0.14933	11.421	11.328	11.477	0					11	7	2	0	0	0	0.51817	1	2205	2205		30.504	0	1	63278	+	+	20284	12601	12825	12882	20593	20593					0.021390755275888296
KGAESVTER	9	Unmodified	_KGAESVTER_					0	0	0		ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN	ENSG00000038427|ENST00000265077|VCAN	ENSG00000038427|ENST00000265077|VCAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.75811767578125	2	488.756538	975.498523	-0.092928	-4.5419E-05	2.1006	0.0010267	2.0077	0.00098128	488.75885375196924	35.066	0.58162	35.066	34.941	35.523	0					38	27	3	0	0	0	0.36892	1	11482	11482		44.377	1.5129	1	53096			20285	1183	12826	12883	20594	20594					0.009793915411478338
KGAFAKVKE	9	Unmodified	_KGAFAKVKE_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2925109863281	2	489.292559	976.570566	-0.51636	-0.00025265	-0.11164	-5.4624E-05	-0.628	-0.00030727	489.29253684844434	21.641	0.16511	21.641	21.539	21.704	0					8	3	3	0	0	0	0.22377	1	7092	7092		58.782	2.0609	1	226270			20286	6434	12827	12884	20595	20595					0.0813435068552053
KGAFQERKG	9	Unmodified	_KGAFQERKG_					0	0	0		nc|ENSG00000008128|Q9UQ88-8|CDK11A;ENST00000357760.6_2_1:1643857-1647838:-|nuORF	nc|ENSG00000008128|Q9UQ88-8|CDK11A	nc|ENSG00000008128|Q9UQ88-8|CDK11A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7846374511719	2	510.78289	1019.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.651	1	12.651	12.151	13.151	0								0	0	0	0.2591	1	2708	2708		42.396	6.7778	1				20287	11414	12828	12885	20596	20596					0.04223394394625757
KGAFQERKGP	10	Unmodified	_KGAFQERKGP_					0	0	0		nc|ENSG00000008128|Q9UQ88-8|CDK11A	nc|ENSG00000008128|Q9UQ88-8|CDK11A	nc|ENSG00000008128|Q9UQ88-8|CDK11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3115844726562	2	559.309272	1116.60399	3.4698	0.0019407	0.51833	0.0002899	3.9882	0.0022306	559.3095297297707	22.215	1.1633	22.215	22.054	23.218	0					70	23	4	0	0	0	0.32758	1	7363	7363		64.207	64.207	1	15164000			20288	11414	12829	12886	20597	20597					0.050353524574120456
KGAGPLRGK	9	Unmodified	_KGAGPLRGK_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2770690917969	2	442.277244	882.539935	0.57415	0.00025394	-1.6087	-0.00071149	-1.0345	-0.00045755	442.2767237095314	13.823	0.28193	13.823	13.705	13.987	0					13	7	2	0	0	0	0.24095	1	3245	3245		56.721	16.148	1	142420			20289	1408	12830	12887	20598	20598					0.09396617091135795
KGAGPLRGK	9	Unmodified	_KGAGPLRGK_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.2769775390625	2	442.277244	882.539935	-0.27758	-0.00012277	-0.15891	-7.0282E-05	-0.43649	-0.00019305	442.27702273510897	13.849	0.20155	13.849	13.704	13.906	0					6	4	2	0	0	0	0.047412	1	3453	3453		96.19	35.896	1	152730			20290	1408	12830	12887	20599	20599					0.09396617091135795
KGAGPLRGK	9	Unmodified	_KGAGPLRGK_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2770690917969	2	442.277244	882.539935	-0.51565	-0.00022806	0.060238	2.6642E-05	-0.45542	-0.00020142	442.27736311368886	13.79	0.2091	13.79	13.671	13.88	0					7	4	2	0	0	0	0.1115	1	3288	3288		76.774	8.2894	1	103830			20291	1408	12830	12887	20600	20600					0.09396617091135795
KGAKIVGFTS	10	Unmodified	_KGAKIVGFTS_					0	0	0		tr|U7SGE1|U7SGE1_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02270PE=3SV=1	tr|U7SGE1|U7SGE1_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02270PE=3SV=1	tr|U7SGE1|U7SGE1_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02270PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2973327636719	2	504.297842	1006.58113	-0.82759	-0.00041735	1.234	0.00062232	0.40643	0.00020496	504.29869541347847	18.564	3.5432	18.564	18.441	21.984	0					271	112	5	0	0	0	0.54197	1	6020	6020		40.778	1.5253	1	147700000			20292	22580	12831	12888	20601	20601					0.07810333339955378
KGANRVLFAL	10	Unmodified	_KGANRVLFAL_					0	0	0		ENST00000360089.8_1_1:158065157-158065664:+|nuORF	ENST00000360089.8_1_1:158065157-158065664:+|nuORF	ENST00000360089.8_1_1:158065157-158065664:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.833251953125	2	544.832383	1087.65021	0.38232	0.0002083	0.76762	0.00041822	1.1499	0.00062652	544.8327740745408	17.497	0.16396	17.497	17.415	17.579	0					9	4	3	0	0	0	0.4758	1	4955	4955		44.117	17.424	1	609990			20293	8857	12832	12889	20602	20602					0.10989417359519393
KGAPTPKR	8	Unmodified	_KGAPTPKR_					0	0	0		ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.7635192871094	2	427.763969	853.513385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.628	1	11.628	11.128	12.128	0								0	0	0	1.7419	1	2296	2296		38.806	0	1				20294	5860	12833	12890	20603	20603					0.0807692819979593
KGASFNDNII	10	Unmodified	_KGASFNDNII_					0	0	0		PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant;ENSG00000154864|ENST00000674853|PIEZO2	PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7811889648438	2	539.780013	1077.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.483	1	26.483	25.983	26.983	0								0	0	0	0.4201	1	8533	8533		20.837	0.80668	1				20295	5108	12834	12891	20604	20604					0.009802510922781948
KGAVSRRR	8	Unmodified	_KGAVSRRR_					0	0	0			REV__ENST00000261776.9_1_16:70834832-70834985:-|nuORF	REV__ENST00000261776.9_1_16:70834832-70834985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2926940917969	2	465.291217	928.567881	4.0762	0.0018966	-0.60418	-0.00028112	3.472	0.0016155	465.2908523690534	11.327	0.070948	11.327	11.276	11.347	0					11	4	3	0	0	0	0.5676	1	2172	2172		53.351	53.351	1	294220	+		20296	18020	12835	12892	20605	20605					0.10073940071231391
KGCHHCKLAMK	11	Unmodified	_KGCHHCKLAMK_					0	0	0			REV__ZNF512|p.T286A|1|0.27|ENSG00000243943|chr2:27603227-27603227|A/G|missense_variant	REV__ZNF512|p.T286A|1|0.27|ENSG00000243943|chr2:27603227-27603227|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.2102966308594	3	419.212201	1254.61477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.929	1	17.929	17.429	18.429	0								0	0	0	0.45674	1	4576	4576		23.378	5.1158	1		+		20297	22323	12836	12893	20606	20606					-0.002350277558207381
KGCRQCPAQF	10	2 Carbamidomethyl (C)	_KGC(Carbamidomethyl (C))RQC(Carbamidomethyl (C))PAQF_	KGC(1)RQC(1)PAQF		KGC(51)RQC(51)PAQF		0	2	0			REV__nc|ENSG00000160563|Q6P2C8-2|MED27	REV__nc|ENSG00000160563|Q6P2C8-2|MED27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.2913818359375	2	626.289699	1250.56485	1.0499	0.00065751	1.1552	0.00072346	2.205	0.001381	626.2905904187811	29.652	0.25443	29.652	29.557	29.812	0					19	6	4	0	0	0	0.44469	1	10605	10605		51.335	6.9583	1	601100	+		20298	15757	12837	12894	20607	20607	572;573				-0.050414391601179886
KGCSEKSSM	9	Oxidation (M)	_KGCSEKSSM(Oxidation (M))_		KGCSEKSSM(1)		KGCSEKSSM(51)	0	0	1			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7065124511719	2	486.709885	971.405216	-2.9122	-0.0014174	-3.0462	-0.0014826	-5.9584	-0.0029	486.7087279036647	30.785	0.14995	30.785	30.714	30.864	0					7	4	2	0	0	0	0.28897	1	10533	10533		51.193	7.0759	1	50130	+		20299	14152	12838	12895	20608	20608		538			-0.08162992227948962
KGDADRVPDSE	11	Unmodified	_KGDADRVPDSE_					0	0	0			REV__nc|ENSG00000133710|Q9NQ38-2|SPINK5	REV__nc|ENSG00000133710|Q9NQ38-2|SPINK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.7796630859375	2	594.778199	1187.54184	0.13115	7.8005E-05	3.6316	0.00216	3.7628	0.002238	594.7798822221658	24.576	0.15666	24.576	24.497	24.653	0					6	4	2	0	0	0	0.71641	1	7282	7282		26.063	1.8316	1	97278	+		20300	14718	12839	12896	20609	20609					-0.044424634722190603
KGDELVCLK	9	Unmodified	_KGDELVCLK_					0	0	0			REV__KIF2C|p.R420C|1|0.36|ENSG00000142945|chr1:44759239-44759239|C/T|missense_variant	REV__KIF2C|p.R420C|1|0.36|ENSG00000142945|chr1:44759239-44759239|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.772216796875	2	502.775885	1003.53722	-2.0639	-0.0010377	-4.261	-0.0021423	-6.3248	-0.00318	502.77351703826463	13.231	0.07676	13.231	13.194	13.271	0					6	4	2	0	0	0	0.0406	1	2649	2649		98.629	2.8142	1	106480	+		20301	20786	12840	12897	20610	20610					0.03558980851312299
KGDFTVSLGK	10	Unmodified	_KGDFTVSLGK_					0	0	0			REV__nc|ENSG00000183576|Q86TU7-3|SETD3	REV__nc|ENSG00000183576|Q86TU7-3|SETD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	351.1966857910156	3	351.197596	1050.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.005	1	27.005	26.505	27.505	0								0	0	0	0.4201	1	8276	8276		16.717	0	1		+		20302	16940	12841	12898	20611	20611					0.04769725614710296
KGDGKTCDPS	10	Unmodified	_KGDGKTCDPS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2247314453125	2	504.226756	1006.43896	-0.83829	-0.00042269	-2.5478	-0.0012846	-3.3861	-0.0017073	504.2254805693217	24.153	0.16925	24.153	24.053	24.223	0					9	5	2	0	0	0	0.58308	1	7361	7361		36.318	3.5052	1	147090			20303	3926	12842	12899	20612	20612					-0.06400247464557651
KGDHPLQV	8	Unmodified	_KGDHPLQV_					0	0	0		ENST00000377365.3_1_5:169311764-169407338:-|nuORF	ENST00000377365.3_1_5:169311764-169407338:-|nuORF	ENST00000377365.3_1_5:169311764-169407338:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.2452392578125	2	447.245609	892.476666	0.6079	0.00027188	-2.1131	-0.00094507	-1.5052	-0.00067319	447.2447402416619	29.291	0.66328	29.291	29.053	29.717	0					23	14	2	0	0	0	0.59773	1	10857	10857		49.442	3.4896	1	410540			20304	9050	12843	12900	20613	20613					0.02612631583235725
KGDKEFNYTT	10	Unmodified	_KGDKEFNYTT_					0	0	0			REV__MMP2|p.C349Vfs*72|1|0.45|ENSG00000087245|chr16:55489684-55489684|C/-|frameshift_variant	REV__MMP2|p.C349Vfs*72|1|0.45|ENSG00000087245|chr16:55489684-55489684|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.7877197265625	2	601.788035	1201.56152	-1.8817	-0.0011324	1.8151	0.0010923	-0.066624	-4.0094E-05	601.7888228389538	29.292	0.097303	29.292	29.24	29.337	0					4	2	2	0	0	0	0.21754	1	9846	9846		77.318	9.8239	1	102090	+		20305	13381	12844	12901	20614	20614					-0.031200874614796703
KGDKIKIGL	9	Unmodified	_KGDKIKIGL_					0	0	0			REV__tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	REV__tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.3150634765625	2	486.316035	970.617516	-2.9132	-0.0014167	1.5222	0.00074025	-1.391	-0.00067647	486.3167307492591	17.805	0.15017	17.805	17.672	17.823	0					5	3	2	0	0	0	0.24334	1	4515	4515		40.778	0	1	65975	+		20306	22202	12845	12902	20615	20615					0.13103210236658924
KGDTIQLYL	9	Unmodified	_KGDTIQLYL_					0	0	0		nc|ENSG00000125999|Q8TDL5-2|BPIFB1;ENST00000464032.1_1_20:31886647-31890426:+|nuORF;ENSG00000125999|ENST00000253354|BPIFB1	nc|ENSG00000125999|Q8TDL5-2|BPIFB1	nc|ENSG00000125999|Q8TDL5-2|BPIFB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7962036132812	2	525.795132	1049.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.531	1	42.531	42.031	43.031	0								0	0	0	0.35377	1	16102	16102		24.519	0	1				20307	3456	12846	12903	20616	20616					0.05290609757457787
KGEHLPKSLE	10	Unmodified	_KGEHLPKSLE_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.8789978027344	3	379.880267	1136.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.373	1	12.373	11.873	12.873	0								0	0	0	0.40797	1	2767	2767		28.081	2.5074	1				20308	5515	12847	12904	20617	20617					0.05612799534765145
KGEITSNLK	9	Unmodified	_KGEITSNLK_					0	0	0		tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.28448486328125	2	495.284931	988.55531	0.93133	0.00046127	-2.0566	-0.0010186	-1.1252	-0.00055731	495.2842043513314	24.519	0.26238	24.519	24.414	24.676	0					9	5	3	0	0	0	0.13726	1	8482	8482		70.816	5.659	1	1287700			20309	22945	12848	12905	20618	20618					0.06057439097662609
KGEKGDQGIP	10	Unmodified	_KGEKGDQGIP_					0	0	0		ENST00000479100.1_1_1:32136193-32138672:-|nuORF;nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.77197265625	2	514.772188	1027.52982	0.66753	0.00034362	-0.11178	-5.7543E-05	0.55574	0.00028608	514.7720216725687	26.902	0.4254	26.902	26.639	27.064	0					29	10	4	0	0	0	0.50881	1	8666	8666		44.377	1.5129	1	1789000			20310	1716	12849	12906	20619	20619					0.017159645752371944
KGEKTKAR	8	Unmodified	_KGEKTKAR_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3;REV__CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant	REV__nc|ENSG00000170004|Q12873-2|CHD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2042541503906	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.376	1	48.376	47.876	48.876	0								0	0	0	1.7419	1	19230	19230		17.365	0.66	1		+		20311	16346;12453	12850	12907	20620	20620					0.08380295882932387
KGEQPLLL	8	Unmodified	_KGEQPLLL_					0	0	0		nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF;ENSG00000137266|ENST00000406686|SLC22A23	nc|ENSG00000137266|A1A5C7-3|SLC22A23	nc|ENSG00000137266|A1A5C7-3|SLC22A23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2734375	2	449.273835	896.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.69	1	30.69	30.19	31.19	0								0	0	0	1.7419	1	10481	10481		44.117	0	1				20312	4154	12851	12908	20621	20621					0.08071259419898524
KGESGILGKD	10	Unmodified	_KGESGILGKD_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.79986572265625	2	502.274564	1002.53457	-0.044663	-2.2433E-05	-0.41733	-0.00020962	-0.462	-0.00023205	502.27435220123925	14.682	0.15487	14.682	14.621	14.776	0					15	6	3	0	0	0	0.44292	1	3046	3046		31.53	0	1	3478100			20313	4123	12852	12909	20622	20622					0.033408487179940494
KGEVSARRL	9	Unmodified	_KGEVSARRL_					0	0	0		ENST00000472880.1_1_20:61464332-61467329:+|nuORF;ENST00000469852.5_1_20:61463352-61467329:+|nuORF;ENST00000481800.1_1_20:61463177-61467329:+|nuORF	ENST00000472880.1_1_20:61464332-61467329:+|nuORF	ENST00000472880.1_1_20:61464332-61467329:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3039245605469	2	508.30399	1014.59343	1.1406	0.00057977	-1.2555	-0.00063816	-0.11487	-5.8389E-05	508.3033022741024	14.412	0.43156	14.412	14.317	14.748	0					20	9	4	0	0	0	0.35021	1	3742	3742		45.972	45.972	1	1604200			20314	9833	12853	12910	20623	20623					0.08671369802982554
KGFKKSSHLK	10	Unmodified	_KGFKKSSHLK_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.E1775Sfs*19|1|0.31|ENSG00000130856|chr18:76960761-76960761|G/-|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236;ZNF236|p.G1607Rfs*13|1|0.1|ENSG00000130856|chr18:76947552-76947553|-/CT|frameshift_variant	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.23486328125	3	387.236385	1158.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.869	1	15.869	15.369	16.369	0								0	0	0	0.34115	1	4425	4425		44.377	1.5129	1				20315	3680	12854	12911	20624	20624					0.11433088905255318
KGFPVFDKC	9	Unmodified	_KGFPVFDKC_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7633666992188	2	520.76532	1039.51609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.762	1	19.762	19.262	20.262	0								0	0	0	0.23445	1	6302	6302		45.972	9.5255	1		+		20316	13398	12855	12912	20625	20625					-0.002089844575493771
KGFQRPVY	8	Unmodified	_KGFQRPVY_					0	0	0		nc|ENSG00000289690|Q7L2J0-2|MEPCE;ENSG00000146834|ENST00000310512|MEPCE	nc|ENSG00000289690|Q7L2J0-2|MEPCE	nc|ENSG00000289690|Q7L2J0-2|MEPCE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.77923583984375	2	497.777077	993.5396	-0.28075	-0.00013975	2.6154	0.0013019	2.3347	0.0011622	497.77951935422254	32.99	0.56399	32.99	32.775	33.339	0					41	15	3	0	0	0	0.64096	1	12144	12144		42.474	14.592	1	852250			20317	4749	12856	12913	20626	20626					0.04257197371271104
KGFSSNSQS	9	Unmodified	_KGFSSNSQS_					0	0	0			REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF	REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2203063964844	2	471.219788	940.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.032	1	20.032	19.532	20.532	0								0	0	0	0.24724	1	6294	6294		44.117	1.7207	1		+		20318	18624	12857	12914	20627	20627					-0.04757156901325743
KGFVSTIIR	9	Unmodified	_KGFVSTIIR_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.8142395019531	2	510.813659	1019.61277	1.0932	0.00055842	0.53796	0.0002748	1.6312	0.00083322	510.81358370836733	19.466	0.10104	19.466	19.402	19.503	0					5	3	2	0	0	0	0.38666	1	5050	5050		27.882	0	1	124980			20319	6050	12858	12915	20628	20628					0.10374326093904074
KGGAHRSPPK	10	Unmodified	_KGGAHRSPPK_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7966918945312	2	517.796332	1033.57811	0.91839	0.00047554	-0.084658	-4.3836E-05	0.83373	0.0004317	517.7962585957989	13.88	0.15063	13.88	13.814	13.965	0					14	7	3	0	0	0	0.31613	1	2844	2844		65.465	65.465	1	377790	+		20320	15664	12859	12916	20629	20629					0.06266503005804225
KGGDDEGVIR	10	Unmodified	_KGGDDEGVIR_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2698364257812	2	523.26727	1044.51999	-0.0066228	-3.4655E-06	1.2949	0.00067759	1.2883	0.00067412	523.26786921152	24.382	0.31545	24.382	24.23	24.545	0					13	6	3	0	0	0	0.21754	1	8520	8520		77.318	4.4383	1	261230	+		20321	17187	12860	12917	20630	20630					-0.0004922343014186481
KGGGHIKEHI	10	Unmodified	_KGGGHIKEHI_					0	0	0			REV__ENSG00000167384|ENST00000592529|ZNF180	REV__ENSG00000167384|ENST00000592529|ZNF180	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3034057617188	2	538.30399	1074.59343	0.8181	0.00044039	-1.1438	-0.00061573	-0.32573	-0.00017534	538.3032205304729	18.131	0.099558	18.131	18.061	18.161	0					6	3	2	0	0	0	0.25899	1	4463	4463		60.118	0	1	98766	+		20322	16188	12861	12918	20631	20631					0.05911369802970512
KGGGTEEAKAE	11	Unmodified	_KGGGTEEAKAE_					0	0	0			REV__CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	REV__CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7654418945312	2	538.76456	1075.51457	2.0378	0.0010979	-0.13974	-7.5288E-05	1.8981	0.0010226	538.7645569327614	32.514	0.42038	32.514	32.203	32.623	0					15	8	2	0	0	0	0.30836	1	12279	12279		61.691	2.9093	1	491520	+		20323	12652	12862	12919	20632	20632					-0.020169470126347733
KGGHAGWAVML	11	Unmodified	_KGGHAGWAVML_					0	0	0		ENST00000377710.9_1_20:17970970-17971042:+|nuORF	ENST00000377710.9_1_20:17970970-17971042:+|nuORF	ENST00000377710.9_1_20:17970970-17971042:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7941284179688	2	563.794943	1125.57533	0.11093	6.2539E-05	-1.1928	-0.0006725	-1.0819	-0.00060996	563.7941363807836	31.547	0.10541	31.547	31.5	31.605	0					4	2	2	0	0	0	0.3828	1	11919	11919		53.351	5.6941	1	83890			20324	9055	12863	12920	20633	20633					0.017569115566402616
KGGHEVDIDV	10	Unmodified	_KGGHEVDIDV_					0	0	0			REV__ENST00000466342.1_1_5:179250916-179260288:+|nuORF	REV__ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7730102539062	2	534.769645	1067.52474	2.2456	0.0012009	2.6121	0.0013969	4.8578	0.0025978	534.7703026112813	34.184	0.23936	34.184	34.067	34.306	0					8	6	2	0	0	0	0.49411	1	12725	12725		45.972	3.5761	1	91732	+		20325	15774	12864	12921	20634	20634					-0.006323392874037381
KGGKAFQHFD	10	Unmodified	_KGGKAFQHFD_					0	0	0			REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.7905883789062	2	567.788173	1133.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.487	1	15.487	14.987	15.987	0								0	0	0	0.4044	1	3541	3541		29.17	6.1276	1		+		20326	13271	12865	12922	20635	20635					0.0003537704903919803
KGGNIGAK	8	Unmodified	_KGGNIGAK_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.721435546875	2	372.72177	743.428987	2.6144	0.00097443	-2.4601	-0.00091693	0.15428	5.7505E-05	372.7207155490815	30.766	0.15978	30.766	30.687	30.847	0					10	6	2	0	0	0	0.65276	1	9850	9850		40.573	0	1	87118			20327	3874	12866	12923	20636	20636					0.04700977383038207
KGGNIGAK	8	Unmodified	_KGGNIGAK_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.7212829589844	2	372.72177	743.428987	0.25142	9.3709E-05	-0.26313	-9.8073E-05	-0.011709	-4.3642E-06	372.7215162536714	31.004	0.24868	31.004	30.909	31.157	0					8	5	2	0	0	0	0.34985	1	11664	11664		76.847	2.33	1	149310			20328	3874	12866	12923	20637	20637					0.04700977383038207
KGGTERPSK	9	Unmodified	_KGGTERPSK_					0	0	0			REV__FLG|p.E160Rfs*10|1|0.4|ENSG00000143631|chr1:152314408-152314409|-/T|frameshift_variant	REV__FLG|p.E160Rfs*10|1|0.4|ENSG00000143631|chr1:152314408-152314409|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2670593261719	2	480.267073	958.519593	0.49946	0.00023987	-1.1677	-0.00056081	-0.66825	-0.00032094	480.26656703989556	14.341	0.20494	14.341	14.262	14.467	0					12	5	3	0	0	0	0.063823	1	3463	3463		90.37	0	1	655990	+	+	20329	12594	12867	12924	20638	20638					0.03867401640661683
KGGTLQRSTS	10	Unmodified	_KGGTLQRSTS_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7850952148438	2	517.783087	1033.55162	3.3343	0.0017265	1.3664	0.00070748	4.7007	0.0024339	517.7838227828648	20.65	0.66506	20.65	20.311	20.976	0					36	13	4	0	0	0	0.31613	1	6565	6565		65.465	3.7741	1	2041800			20330	7377	12868	12925	20639	20639					0.036187693238161955
KGHENIVCIH	10	Unmodified	_KGHENIVCIH_					0	0	0			REV__ENSG00000099256|ENST00000320152|PRTFDC1	REV__ENSG00000099256|ENST00000320152|PRTFDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2981567382812	2	575.295307	1148.57606	3.3189	0.0019093	1.6897	0.00097207	5.0086	0.0028814	575.2960512211366	30.857	0.51018	30.857	30.697	31.207	0					34	10	6	0	0	0	0.6796	1	11456	11456		24.519	0	1	9268100	+		20331	13488	12869	12926	20640	20640					0.007717062056826762
KGHFRRSP	8	Unmodified	_KGHFRRSP_					0	0	0		ENST00000594572.1_1_1:203045188-203045954:+|nuORF;ENST00000367240.6_1_1:203045582-203045954:+|nuORF	ENST00000594572.1_1_1:203045188-203045954:+|nuORF	ENST00000594572.1_1_1:203045188-203045954:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	328.85516357421875	3	328.854387	983.541332	1.5097	0.00049647	1.0301	0.00033876	2.5398	0.00083522	328.8546831070806	35.002	0.25626	35.002	34.892	35.148	0					15	7	3	0	0	0	0.7914	1	13542	13542		11.511	11.511	1	252980			20332	8911	12870	12927	20641	20641					0.04890251179892857
KGHGGARPSP	10	Unmodified	_KGHGGARPSP_					0	0	0		ENST00000427323.5_1_3:38388271-38390057:+|nuORF	ENST00000427323.5_1_3:38388271-38390057:+|nuORF	ENST00000427323.5_1_3:38388271-38390057:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.26092529296875	2	482.259582	962.504612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.433	1	11.433	10.933	11.933	0								0	0	0	0.35072	1	2219	2219		42.864	0.46813	1				20333	9455	12871	12928	20642	20642					0.021859545633219568
KGHGPGPQ	8	Unmodified	_KGHGPGPQ_					0	0	0			REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.2037353515625	2	389.203744	776.392936	0.86798	0.00033782	-1.1201	-0.00043595	-0.25212	-9.8127E-05	389.203311254709	12.245	0.067247	12.245	12.215	12.282	0					4	2	2	0	0	0	0.65276	1	2545	2545		40.573	5.3719	1	64229	+		20334	17068	12872	12929	20643	20643					-0.004204797938086813
KGHHPLNPQ	9	Unmodified	_KGHHPLNPQ_					0	0	0		ENSG00000237412|ENST00000617714|PRSS56	ENSG00000237412|ENST00000617714|PRSS56	ENSG00000237412|ENST00000617714|PRSS56	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2765502929688	2	514.275232	1026.53591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.683	1	12.683	12.183	13.183	0								0	0	0	0.35899	1	2759	2759		23.042	5.5745	1				20335	7914	12873	12930	20644	20644					0.023705275973952666
KGHSQVLQ	8	Unmodified	_KGHSQVLQ_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ;ENST00000465476.1_1_3:101573497-101574322:+|nuORF	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.75079345703125	2	448.751059	895.487565	-0.40135	-0.00018011	-0.29497	-0.00013237	-0.69632	-0.00031247	448.7509691530934	20.985	0.21533	20.985	20.844	21.059	0					6	4	2	0	0	0	0.6088	1	6778	6778		47.657	0	1	1096200			20336	4639	12874	12931	20645	20645					0.03564033957513857
KGIFLLRNQ	9	Unmodified	_KGIFLLRNQ_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.8325805664062	2	544.832383	1087.65021	0.49893	0.00027184	-0.45779	-0.00024942	0.041148	2.2419E-05	544.8323888450021	17.249	0.11657	17.249	17.168	17.284	0					5	3	2	0	0	0	0.56424	1	4298	4298		12.207	0	1	100960			20337	5471	12875	12932	20646	20646					0.10989417359519393
KGINTHTHKI	10	Unmodified	_KGINTHTHKI_					0	0	0			REV__ENST00000371146.5_1_1:62916657-62916786:+|nuORF	REV__ENST00000371146.5_1_1:62916657-62916786:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.8301391601562	2	574.830372	1147.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.164	1	25.164	24.664	25.664	0								0	0	0	0.38093	1	7961	7961		18.262	0	1		+		20338	18648	12876	12933	20647	20647					0.07827327865788902
KGIVGNSRSSS	11	Unmodified	_KGIVGNSRSSS_					0	0	0			REV__DMRTA1|p.E381Vfs*25|1|0.05|ENSG00000176399|chr9:22451537-22451538|-/TCTTGATATCCTTACTAAGATTTTCCCAAATTAC|frameshift_variant	REV__DMRTA1|p.E381Vfs*25|1|0.05|ENSG00000176399|chr9:22451537-22451538|-/TCTTGATATCCTTACTAAGATTTTCCCAAATTAC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2918701171875	2	546.293819	1090.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.275	1	41.275	40.775	41.775	0								0	0	0	0.41424	1	16231	16231		33.922	3.418	1		+		20339	12718	12877	12934	20648	20648					0.03142154352531179
KGKHNLLGPD	10	Unmodified	_KGKHNLLGPD_					0	0	0		FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant;FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant;FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant;FRMPD4|p.S1105Vfs*3|1|0.29|ENSG00000169933|chrX:12718134-12718134|A/-|frameshift_variant;FRMPD4|p.L1210Pfs*39|1|0.05|ENSG00000169933|chrX:12718454-12718455|-/CT|frameshift_variant;nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4	FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant	FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8056640625	2	539.803823	1077.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.013	1	30.013	29.513	30.513	0								0	0	0	0.32041	1	11175	11175		47.657	3.5405	1				20340	6198	12878	12935	20649	20649					0.0573995008314796
KGKKCFSSF	9	Unmodified	_KGKKCFSSF_					0	0	0		ENST00000393784.7_1_5:172379611-172379665:+|nuORF	ENST00000393784.7_1_5:172379611-172379665:+|nuORF	ENST00000393784.7_1_5:172379611-172379665:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.27197265625	2	516.27077	1030.52699	-0.50881	-0.00026269	-0.050805	-2.6229E-05	-0.55962	-0.00028892	516.2716980243705	28.275	0.30805	28.275	28.157	28.465	0					12	6	3	0	0	0	0.48389	1	10350	10350		34.173	0.65696	1	120990			20341	9164	12879	12936	20650	20650					0.012944179167106995
KGKKINSTY	9	Unmodified	_KGKKINSTY_					0	0	0			REV__nc|ENSG00000129657|Q92503-3|SEC14L1	REV__nc|ENSG00000129657|Q92503-3|SEC14L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.759033203125	2	519.800749	1037.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.323	1	30.323	29.823	30.823	0								0	0	0	0.28666	1	10312	10312		37.812	1.3648	1		+		20342	14555	12880	12937	20651	20651					0.06965431851631365
KGKKYQTVK	9	Unmodified	_KGKKYQTVK_					0	0	0			REV__ENSG00000241343|ENST00000553110|RPL36A	REV__ENSG00000241343|ENST00000553110|RPL36A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.332763671875	2	540.332216	1078.64988	1.4329	0.00077425	-0.54698	-0.00029555	0.88593	0.0004787	540.3320213268931	18.892	0.11668	18.892	18.834	18.951	0					6	2	3	0	0	0	0.13726	1	5889	5889		54.776	3.5836	1	257310	+		20343	16044	12881	12938	20652	20652					0.11369997639667417
KGKMRIFK	8	Unmodified	_KGKMRIFK_					0	0	0			REV__ENST00000229812.7_1_6:36463177-36463339:-|nuORF	REV__ENST00000229812.7_1_6:36463177-36463339:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.3111267089844	2	504.312772	1006.61099	-2.0152	-0.0010163	-1.8237	-0.00091969	-3.8388	-0.001936	504.3118151862947	45.084	0.33205	45.084	44.981	45.313	0					39	20	3	0	0	0	0.68754	1	15388	15388		35.201	0	1	426660	+		20344	17912	12882	12939	20653	20653					0.10794993804290698
KGKNTPYINE	10	Unmodified	_KGKNTPYINE_					0	0	0		tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.53997802734375	3	388.540022	1162.59824	0.20269	7.8753E-05	-0.4081	-0.00015856	-0.20541	-7.9812E-05	388.53990074994505	28.373	0.20726	28.373	28.275	28.482	0					11	4	3	0	0	0	0.54197	1	10401	10401		37.508	0	1	766140			20345	22867	12883	12940	20654	20654					0.02344209155057797
KGKNWLFM	8	Unmodified	_KGKNWLFM_					0	0	0			REV__ENST00000568924.1_1_16:89367231-89379861:-|nuORF	REV__ENST00000568924.1_1_16:89367231-89379861:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2771606445312	2	512.275855	1022.53716	1.0541	0.00054	0.74228	0.00038025	1.7964	0.00092025	512.2763221636482	35.983	0.39274	35.983	35.865	36.257	0					22	10	3	0	0	0	0.68754	1	13615	13615		35.201	1.7077	1	1346900	+		20346	20364	12884	12941	20655	20655					0.02679025641964472
KGKQIVEY	8	Unmodified	_KGKQIVEY_					0	0	0		ENST00000403687.7_1_2:33701482-33701566:+|nuORF	ENST00000403687.7_1_2:33701482-33701566:+|nuORF	ENST00000403687.7_1_2:33701482-33701566:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7764892578125	2	482.776742	963.538931	0.57759	0.00027885	-1.4685	-0.00070897	-0.89094	-0.00043013	482.77619548252665	23.837	0.23673	23.837	23.736	23.973	0					8	5	2	0	0	0	0.67394	1	7962	7962		37.159	1.5408	1	218490			20347	9265	12885	12942	20656	20656					0.05570357931549097
KGKQIVEY	8	Unmodified	_KGKQIVEY_					0	0	0		ENST00000403687.7_1_2:33701482-33701566:+|nuORF	ENST00000403687.7_1_2:33701482-33701566:+|nuORF	ENST00000403687.7_1_2:33701482-33701566:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7766418457031	2	482.776742	963.538931	-0.60648	-0.00029279	-0.68071	-0.00032863	-1.2872	-0.00062143	482.7770029804668	23.734	0.36255	23.734	23.634	23.996	0					12	7	3	0	0	0	0.41952	1	8105	8105		68.485	7.5128	1	222840			20348	9265	12885	12942	20657	20657					0.05570357931549097
KGKRDLIVP	9	Unmodified	_KGKRDLIVP_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11;PRDM11|p.P127Rfs*40|2|0.26|ENSG00000019485|chr11:45182910-45182910|C/-|frameshift_variant;PRDM11|p.D398Tfs*54|1|0.08|ENSG00000019485|chr11:45224560-45224560|G/-|frameshift_variant;nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.326416015625	2	513.326934	1024.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.722	1	14.722	14.222	15.222	0								0	0	0	0.33029	1	3239	3239		21.96	0	1				20349	1095	12886	12943	20658	20658					0.12798014985219197
KGKRVVKYGGA	11	Unmodified	_KGKRVVKYGGA_					0	0	0			REV__ENST00000487682.5_1_1:156909295-156909928:-|nuORF	REV__ENST00000487682.5_1_1:156909295-156909928:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.2400817871094	3	388.240018	1161.69823	0.162	6.2894E-05	-0.45391	-0.00017623	-0.29191	-0.00011333	388.23993309927744	25.214	0.26931	25.214	25.106	25.375	0					7	5	2	0	0	0	0.71641	1	8913	8913		26.063	0.48933	1	87361	+		20350	19681	12887	12944	20659	20659					0.12384491279544818
KGKSIVDVGL	10	Unmodified	_KGKSIVDVGL_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3118896484375	2	508.310949	1014.60735	-0.57623	-0.00029291	2.0796	0.0010571	1.5033	0.00076416	508.312055704724	25.496	0.10917	25.496	25.429	25.538	0					9	4	3	0	0	0	0.44292	1	7933	7933		39.253	0	1	84192			20351	6027	12888	12945	20660	20660					0.10062602511413843
KGKSREGGTK	10	Unmodified	_KGKSREGGTK_					0	0	0		ENST00000380605.2_1_20:2774757-2774832:-|nuORF	ENST00000380605.2_1_20:2774757-2774832:-|nuORF	ENST00000380605.2_1_20:2774757-2774832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.775390625	2	524.298904	1046.58326	1.6263	0.00085267	-1.7409	-0.00091277	-0.11463	-6.0101E-05	524.2980437350237	14.21	0.52051	14.21	14.088	14.609	0					20	10	3	0	0	0	0.58308	1	3660	3660		18.262	0	1	1315800			20352	9096	12889	12946	20661	20661					0.06182762077764892
KGKTSNLV	8	Unmodified	_KGKTSNLV_					0	0	0			REV__tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	REV__tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.75567626953125	2	423.75581	845.497067	-0.81543	-0.00034554	0.58021	0.00024587	-0.23522	-9.9675E-05	423.7560293416401	18.245	0.1809	18.245	18.159	18.339	0					9	4	3	0	0	0	0.43813	1	5311	5311		66.429	3.123	1	979880	+		20353	22128	12890	12947	20662	20662					0.06813802243038936
KGKTVKFVDIM	11	Unmodified	_KGKTVKFVDIM_					0	0	0			REV__ENST00000441645.1_1_2:237317014-237317317:-|nuORF	REV__ENST00000441645.1_1_2:237317014-237317317:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	633.3690795898438	2	633.367941	1264.72133	3.0808	0.0019513	-0.84539	-0.00053544	2.2354	0.0014159	633.3673404002566	54.303	0.25378	54.303	54.161	54.415	0					26	15	2	0	0	0	0.79221	1	20740	20740		16.717	1.0756	1	94356	+		20354	19242	12891	12948	20663	20663					0.09955749281994031
KGKYGVNIG	9	Unmodified	_KGKYGVNIG_					0	0	0		tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2691650390625	2	468.269084	934.523616	-1.0381	-0.00048613	1.1491	0.00053809	0.11096	5.1957E-05	468.2696356121282	32.581	0.20396	32.581	32.48	32.683	0					11	8	2	0	0	0	0.5879	1	10870	10870		23.042	1.0826	1	54157			20355	22825	12892	12949	20664	20664					0.05373491134366759
KGKYGVNIGK	10	Unmodified	_KGKYGVNIGK_					0	0	0		tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8179931640625	2	532.316566	1062.61858	-1.2691	-0.00067557	1.8918	0.0010071	0.62273	0.00033149	532.8183972185689	20.082	0.1338	20.082	20.04	20.173	0					5	3	2	0	0	0	0.52275	1	5588	5588		16.473	4.2663	1	78368			20356	22825	12893	12950	20665	20665					0.0897742460556401
KGLLPHPT	8	Unmodified	_KGLLPHPT_					0	0	0		ENST00000310942.8_1_17:77758954-77759245:+|nuORF	ENST00000310942.8_1_17:77758954-77759245:+|nuORF	ENST00000310942.8_1_17:77758954-77759245:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7605895996094	2	431.760895	861.507237	0.93191	0.00040236	-1.9709	-0.00085096	-1.039	-0.0004486	431.76013945941855	37.211	0.26336	37.211	37.103	37.366	0					7	5	2	0	0	0	0.66372	1	14541	14541		38.806	6.8513	1	166420			20357	8552	12894	12951	20666	20666					0.07094409968271975
KGLLQLEEF	9	Unmodified	_KGLLQLEEF_					0	0	0			REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.802001953125	2	538.802957	1075.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.836	1	10.836	10.336	11.336	0								0	0	0	0.19749	1	2102	2102		51.335	0	1		+		20358	14528	12895	12952	20667	20667					0.05658896274508152
KGLPAGPLSPG	11	Unmodified	_KGLPAGPLSPG_					0	0	0			REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2907409667969	2	497.290017	992.565481	0.16098	8.0052E-05	-0.65667	-0.00032656	-0.4957	-0.0002465	497.28964510322976	24.33	0.15813	24.33	24.249	24.407	0					12	5	3	0	0	0	0.23884	1	7155	7155		69.628	5.4204	1	154600	+		20359	19041	12896	12953	20668	20668					0.068900468229117
KGLSTQLLEG	10	Unmodified	_KGLSTQLLEG_					0	0	0		nc|ENSG00000188878|Q8TES7-4|FBF1	nc|ENSG00000188878|Q8TES7-4|FBF1	nc|ENSG00000188878|Q8TES7-4|FBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2986450195312	2	523.298039	1044.58152	-1.2873	-0.00067365	2.5015	0.001309	1.2141	0.00063536	523.2993257157713	29.148	0.16681	29.148	29.042	29.209	0					9	5	2	0	0	0	0.44601	1	9767	9767		51.193	1.7511	1	109580			20360	11699	12897	12954	20669	20669					0.06101708269147821
KGLVDYMVK	9	Unmodified	_KGLVDYMVK_					0	0	0		tr|U7SNS0|U7SNS0_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01923PE=4SV=1	tr|U7SNS0|U7SNS0_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01923PE=4SV=1	tr|U7SNS0|U7SNS0_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01923PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7939453125	2	526.794078	1051.5736	0.59997	0.00031606	-1.0503	-0.00055331	-0.45036	-0.00023725	526.7935687662157	13.014	0.15893	13.014	12.96	13.119	0					12	7	3	0	0	0	0.61124	1	2525	2525		16.473	1.6083	1	788890			20361	22687	12898	12955	20670	20670					0.049878577480058084
KGLYEKGR	8	Unmodified	_KGLYEKGR_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000553230.1_1_12:56711395-56712273:-|nuORF;ENST00000551359.5_1_12:56711395-56713019:-|nuORF;ENST00000547226.5_1_12:56711395-56716647:-|nuORF	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.77410888671875	2	475.774534	949.534515	0.3385	0.00016105	-0.9073	-0.00043167	-0.5688	-0.00027062	475.7740520916596	22.39	0.14504	22.39	22.34	22.485	0					8	3	3	0	0	0	0.43813	1	7281	7281		66.429	5.4573	1	361710			20362	3997	12899	12956	20671	20671					0.05772893508662946
KGLYEKGR	8	Unmodified	_KGLYEKGR_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000553230.1_1_12:56711395-56712273:-|nuORF;ENST00000551359.5_1_12:56711395-56713019:-|nuORF;ENST00000547226.5_1_12:56711395-56716647:-|nuORF	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7742004394531	2	475.774534	949.534515	-0.61633	-0.00029323	-0.10421	-4.9581E-05	-0.72054	-0.00034281	475.77450001770154	22.295	0.26528	22.295	22.19	22.455	0					8	5	2	0	0	0	0.51384	1	7404	7404		58.782	3.2778	1	812710			20363	3997	12899	12956	20672	20672					0.05772893508662946
KGMGGAGF	8	Unmodified	_KGMGGAGF_					0	0	0			REV__DIRAS1|p.V18M|1|0.44|ENSG00000176490|chr19:2717755-2717755|C/T|missense_variant	REV__DIRAS1|p.V18M|1|0.44|ENSG00000176490|chr19:2717755-2717755|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.6745910644531	2	362.675974	723.337395	0.48742	0.00017677	-4.0123	-0.0014552	-3.5249	-0.0012784	362.67429330800513	32.216	0.16492	32.216	32.109	32.274	0					6	3	2	0	0	0	0.79293	1	12239	12239		15.636	6.1657	1	51311	+		20364	12708	12900	12957	20673	20673					-0.035340293057970484
KGMTAKDSK	9	Unmodified	_KGMTAKDSK_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2579345703125	2	483.257859	964.501166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.183	1	15.183	14.683	15.683	0								0	0	0	0.3119	1	3410	3410		32.812	0	1				20365	7088	12901	12958	20674	20674					0.01749523674448028
KGNKELLQ	8	Unmodified	_KGNKELLQ_					0	0	0		ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2745056152344	2	465.274367	928.53418	-0.16902	-7.8641E-05	-0.13668	-6.3596E-05	-0.30571	-0.00014224	465.2742202300439	15.538	0.19128	15.538	15.419	15.61	0					13	6	3	0	0	0	0.28427	1	3496	3496		87.754	5.4493	1	268170			20366	2785	12902	12959	20675	20675					0.06705473788792915
KGNLQEILEL	10	Unmodified	_KGNLQEILEL_					0	0	0			REV__tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	REV__tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.8323364257812	2	578.832246	1155.64994	3.2584	0.001886	-2.4015	-0.0013901	0.85685	0.00049597	578.8307941093244	39.681	0.23896	39.681	39.543	39.782	0					9	5	2	0	0	0	0.49411	1	15688	15688		45.972	3.108	1	212090	+		20367	22198	12903	12960	20676	20676					0.07833952849023262
KGNLREYLQ	9	Unmodified	_KGNLREYLQ_					0	0	0		nc|ENSG00000077782|P11362-13|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-13|FGFR1	nc|ENSG00000077782|P11362-13|FGFR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8094482421875	2	560.809105	1119.60366	0.65866	0.00036939	-0.14151	-7.9359E-05	0.51716	0.00029003	560.8088925254494	23.872	0.36765	23.872	23.711	24.079	0					19	7	4	0	0	0	0.24095	1	8274	8274		56.721	3.7844	1	1085000			20368	1589	12904	12961	20677	20677					0.04863932737566756
KGNLVAVGAG	10	Unmodified	_KGNLVAVGAG_					0	0	0			REV__ENST00000480769.5_1_1:185267169-185274781:-|nuORF	REV__ENST00000480769.5_1_1:185267169-185274781:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2624816894531	2	443.261259	884.507966	0.24933	0.00011052	0.54293	0.00024066	0.79225	0.00035118	443.2615220098852	22.563	0.13449	22.563	22.47	22.605	0					7	4	2	0	0	0	0.069461	1	6394	6394		102.77	1.1726	1	88858	+		20369	14155	12905	12962	20678	20678					0.061092046173257586
KGNMVVETEP	10	Unmodified	_KGNMVVETEP_					0	0	0		nc|ENSG00000088876|Q6P1L6-2|ZNF343;ENSG00000088876|ENST00000278772|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.2764282226562	2	552.273706	1102.53286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.098	1	17.098	16.598	17.598	0								0	0	0	0.27541	1	4193	4193		54.776	3.4409	1				20370	1786	12906	12963	20679	20679					-0.014305283622434217
KGNSFQVTL	9	Unmodified	_KGNSFQVTL_					0	0	0			REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2719421386719	2	497.271824	992.529095	-2.3083	-0.0011478	2.3131	0.0011502	0.0048012	2.3875E-06	497.2730031138002	24.501	0.3411	24.501	24.206	24.547	0					14	8	2	0	0	0	0.51991	1	7623	7623		30.318	1.1477	1	141790	+		20371	21035	12907	12964	20680	20680					0.03253169926199462
KGNSPLLQK	9	Unmodified	_KGNSPLLQK_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;ENSG00000100325|ENST00000307790|ASCC2;ENST00000465667.6_1_22:30218318-30228314:-|nuORF;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7955017089844	2	492.795466	983.57638	-0.016884	-8.3204E-06	-0.4001	-0.00019717	-0.41699	-0.00020549	492.7950987381397	18.517	0.14484	18.517	18.406	18.551	0					6	4	2	0	0	0	0.18416	1	4853	4853		63.534	2.5619	1	45471			20372	240	12908	12965	20681	20681					0.08393449197171776
KGPAERSKQ	9	Unmodified	_KGPAERSKQ_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7804870605469	2	500.780348	999.546142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.42	1	23.42	22.92	23.92	0								0	0	0	0.31838	1	6777	6777		31.53	1.0262	1		+		20373	15011	12909	12966	20682	20682					0.04635090531996866
KGPDGTPGK	9	Unmodified	_KGPDGTPGK_					0	0	0			REV__COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	REV__COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.7293395996094	2	428.729792	855.445031	-0.23731	-0.00010174	-0.82342	-0.00035302	-1.0607	-0.00045476	428.72943579639076	21.481	0.074661	21.481	21.431	21.506	0					5	3	2	0	0	0	0.4966	1	5929	5929		32.812	0.85756	1	40930	+		20374	12549	12910	12967	20683	20683					0.011526388292850243
KGPERAAL	8	Unmodified	_KGPERAAL_					0	0	0			REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2477111816406	2	421.248152	840.481751	-0.1988	-8.3745E-05	-0.35244	-0.00014847	-0.55125	-0.00023221	421.2479406912363	30.348	0.25943	30.348	30.217	30.476	0					16	9	2	0	0	0	0.78978	1	9630	9630		21.96	0	1	121570	+		20375	22157	12911	12968	20684	20684					0.055129354458472335
KGPGAARAL	9	Unmodified	_KGPGAARAL_					0	0	0		ENST00000483273.2_1_1:16133986-16134037:-|nuORF	ENST00000483273.2_1_1:16133986-16134037:-|nuORF	ENST00000483273.2_1_1:16133986-16134037:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.7563781738281	2	420.756144	839.497735	1.3161	0.00055374	-0.86494	-0.00036393	0.45113	0.00018981	420.75583929600396	17.491	0.18055	17.491	17.368	17.548	0					10	6	2	0	0	0	0.13519	1	4171	4171		71.296	17.944	1	156320			20376	9977	12912	12969	20685	20685					0.07156641682729514
KGPGAARAL	9	Unmodified	_KGPGAARAL_					0	0	0		ENST00000483273.2_1_1:16133986-16134037:-|nuORF	ENST00000483273.2_1_1:16133986-16134037:-|nuORF	ENST00000483273.2_1_1:16133986-16134037:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.7563781738281	2	420.756144	839.497735	0.4087	0.00017196	-0.62673	-0.0002637	-0.21803	-9.1738E-05	420.75587983247306	17.836	0.26737	17.836	17.708	17.975	0					14	6	3	0	0	0	0.14603	1	5075	5075		68.787	17.451	1	922510			20377	9977	12912	12969	20686	20686					0.07156641682729514
KGPGAARAL	9	Unmodified	_KGPGAARAL_					0	0	0		ENST00000483273.2_1_1:16133986-16134037:-|nuORF	ENST00000483273.2_1_1:16133986-16134037:-|nuORF	ENST00000483273.2_1_1:16133986-16134037:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.7560729980469	2	420.756144	839.497735	-0.094714	-3.9851E-05	-0.33241	-0.00013986	-0.42712	-0.00017971	420.75599560295757	17.76	0.32005	17.76	17.651	17.971	0					14	6	3	0	0	0	0.2873	1	5319	5319		51.335	7.2187	1	1124500			20378	9977	12912	12969	20687	20687					0.07156641682729514
KGPGAGSAL	9	Unmodified	_KGPGAGSAL_					0	0	0		ENST00000600466.1_1_19:50304984-50305399:+|nuORF;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENST00000600466.1_1_19:50304984-50305399:+|nuORF	ENST00000600466.1_1_19:50304984-50305399:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.2137145996094	2	379.213778	756.413003	0.19653	7.4528E-05	-0.39282	-0.00014896	-0.19629	-7.4435E-05	379.21362185639816	20.059	0.19863	20.059	19.954	20.153	0					11	4	3	0	0	0	0.17854	1	6167	6167		64.207	8.7031	1	1229000			20379	174	12913	12970	20688	20688					0.025052711461171384
KGPGAGSAL	9	Unmodified	_KGPGAGSAL_					0	0	0		ENST00000600466.1_1_19:50304984-50305399:+|nuORF;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENST00000600466.1_1_19:50304984-50305399:+|nuORF	ENST00000600466.1_1_19:50304984-50305399:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.2138671875	2	379.213778	756.413003	-1.1125	-0.00042186	0.88984	0.00033744	-0.22262	-8.4422E-05	379.2140756402773	19.76	0.26655	19.76	19.65	19.917	0					18	9	3	0	0	0	0.25716	1	5400	5400		54.776	2.4771	1	325990			20380	174	12913	12970	20689	20689					0.025052711461171384
KGPGAGSAL	9	Unmodified	_KGPGAGSAL_					0	0	0		ENST00000600466.1_1_19:50304984-50305399:+|nuORF;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENST00000600466.1_1_19:50304984-50305399:+|nuORF	ENST00000600466.1_1_19:50304984-50305399:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.21380615234375	2	379.213778	756.413003	0.66657	0.00025277	-0.6635	-0.00025161	0.0030747	1.166E-06	379.21356118279436	19.986	0.26921	19.986	19.825	20.094	0					10	5	3	0	0	0	0.13267	1	6286	6286		71.877	10.906	1	1100700			20381	174	12913	12970	20690	20690					0.025052711461171384
KGPGSTKEL	9	Unmodified	_KGPGSTKEL_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515015.1_1_5:140038902-140040409:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7583923339844	2	458.758549	915.502546	0.090437	4.1489E-05	-0.19424	-8.9108E-05	-0.1038	-4.7619E-05	458.75837729872796	16.434	0.19329	16.434	16.334	16.527	0					6	5	2	0	0	0	0.25761	1	3896	3896		54.722	4.6978	1	57150			20382	2779	12914	12971	20691	20691					0.04141481034866956
KGPGSTKEL	9	Unmodified	_KGPGSTKEL_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515015.1_1_5:140038902-140040409:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7582702636719	2	458.758549	915.502546	-0.44176	-0.00020266	0.051885	2.3803E-05	-0.38987	-0.00017886	458.7584610924541	16.648	0.21482	16.648	16.499	16.714	0					8	4	3	0	0	0	0.10506	1	4642	4642		78.264	6.3863	1	634180			20383	2779	12914	12971	20692	20692					0.04141481034866956
KGPNKYTL	8	Unmodified	_KGPNKYTL_					0	0	0		ENST00000507234.1_1_5:14639922-14640066:-|nuORF	ENST00000507234.1_1_5:14639922-14640066:-|nuORF	ENST00000507234.1_1_5:14639922-14640066:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7632141113281	2	460.763635	919.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.694	1	32.694	32.194	33.194	0								0	0	0	1.7419	1	10583	10583		31.955	1.4512	1				20384	10200	12915	12972	20693	20693					0.04974088760093309
KGPPRRSK	8	Unmodified	_KGPPRRSK_					0	0	0			REV__ENSG00000074181|ENST00000263388|NOTCH3	REV__ENSG00000074181|ENST00000263388|NOTCH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2866516113281	2	463.288143	924.561733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.942	1	16.942	16.442	17.442	0								0	0	0	1.7419	1	4692	4692		40.778	8.8233	1		+		20385	13214	12916	12973	20694	20694					0.0964342183970075
KGPPVVML	8	Unmodified	_KGPPVVML_					0	0	0			REV__LTR16B2_dup1420|chr19:41726501-41726771:-|2.1926953284573405|0.1104633581990186|4.31|479.0|5|2|sense	REV__LTR16B2_dup1420|chr19:41726501-41726771:-|2.1926953284573405|0.1104633581990186|4.31|479.0|5|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.75555419921875	2	420.754224	839.493896	3.3993	0.0014303	0.9407	0.00039581	4.34	0.0018261	420.75452633854513	17.54	0.10051	17.54	17.448	17.549	0					7	3	3	0	0	0	0.72892	1	4408	4408		29.842	3.0454	1	219590	+		20386	20854	12917	12974	20695	20695					0.06772835864671833
KGPQVSSAL	9	Unmodified	_KGPQVSSAL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.753173828125	2	443.753267	885.491981	-0.29203	-0.00012959	-0.16303	-7.2346E-05	-0.45507	-0.00020194	443.75325321784004	25.297	0.29028	25.297	25.143	25.433	0					19	9	3	0	0	0	0.1424	1	7570	7570		69.628	21.712	1	314110			20387	3401	12918	12975	20696	20696					0.04465498380432109
KGPQVSSAL	9	Unmodified	_KGPQVSSAL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.75311279296875	2	443.753267	885.491981	-0.3629	-0.00016104	-0.15734	-6.9822E-05	-0.52024	-0.00023086	443.7531913931191	25.62	0.59567	25.62	25.32	25.916	0					28	12	4	0	0	0	0.15163	1	8749	8749		67.494	6.5217	1	2458500			20388	3401	12918	12975	20697	20697					0.04465498380432109
KGPQVSSAL	9	Unmodified	_KGPQVSSAL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.75335693359375	2	443.753267	885.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.359	1	25.359	24.859	25.859	0								0	0	0	0.19847	1	8051	8051		51.193	8.7966	1				20389	3401	12918	12975	20698	20698					0.04465498380432109
KGQENLKM	8	Unmodified	_KGQENLKM_					0	0	0		STRN4|p.T112M|1|0.18|ENSG00000090372|chr19:46738836-46738836|G/A|missense_variant	STRN4|p.T112M|1|0.18|ENSG00000090372|chr19:46738836-46738836|G/A|missense_variant	STRN4|p.T112M|1|0.18|ENSG00000090372|chr19:46738836-46738836|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.25299072265625	2	474.252577	946.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.645	1	17.645	17.145	18.145	0								0	0	0	1.7419	1	4442	4442		44.117	4.864	1				20390	22497	12919	12976	20699	20699					0.015215410200198676
KGQESFKKQE	10	Unmodified	_KGQESFKKQE_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;nc|ENSG00000181163|P06748-3|NPM1;ENST00000521088.1_1_8:62115470-62115605:+|nuORF	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.8176879882812	2	604.817127	1207.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.607	1	13.607	13.107	14.107	0								0	0	0	0.28607	1	3350	3350		53.089	3.5529	1				20391	6841	12920	12977	20700	20700					0.024195941838115687
KGQHARQRP	9	Unmodified	_KGQHARQRP_					0	0	0		ENST00000595633.5_1_19:49949641-49950433:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	ENST00000595633.5_1_19:49949641-49950433:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3037109375	2	539.304855	1076.59516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.157	1	23.157	22.657	23.657	0								0	0	0	0.39145	1	6918	6918		7.1934	4.0341	1				20392	11000	12921	12978	20701	20701					0.05992423611587583
KGQIMKILK	9	Unmodified	_KGQIMKILK_					0	0	0		ENST00000434009.5_1_6:111696256-111696382:-|nuORF;REV3L|p.T1059Lfs*43|1|0.19|ENSG00000009413|chr6:111375180-111375180|T/-|frameshift_variant	ENST00000434009.5_1_6:111696256-111696382:-|nuORF	ENST00000434009.5_1_6:111696256-111696382:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.841796875	2	529.841362	1057.66817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.754	1	19.754	19.254	20.254	0								0	0	0	0.36266	1	5171	5171		21.96	0	1				20393	9514	12922	12979	20702	20702					0.14164416289986548
KGQSRAVPK	9	Unmodified	_KGQSRAVPK_					0	0	0			REV__TTLL9|p.M166T|1|0.3|ENSG00000131044|chr20:31909915-31909915|T/C|missense_variant	REV__TTLL9|p.M166T|1|0.3|ENSG00000131044|chr20:31909915-31909915|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.792724609375	2	485.793258	969.571963	-0.08943	-4.3444E-05	-1.2838	-0.00062367	-1.3732	-0.00066711	485.7927925817154	12.089	0.13186	12.089	11.994	12.126	0					5	3	2	0	0	0	0.35021	1	2640	2640		45.972	0.020292	1	37797	+		20394	14611	12923	12980	20703	20703					0.08595984774274257
KGQTLETIYQL	11	Unmodified	_KGQTLETIYQL_					0	0	0			REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	647.3563842773438	2	647.356085	1292.69762	-0.64657	-0.00041856	0.8537	0.00055265	0.20713	0.00013409	647.3565139960389	32.873	0.26989	32.873	32.782	33.052	0					16	6	4	0	0	0	0.46278	1	12521	12521		53.089	1.8963	1	533990	+		20395	19562	12924	12981	20704	20704					0.06297607049214093
KGRCLVATKD	10	Unmodified	_KGRCLVATKD_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.8040161132812	2	545.805508	1089.59646	0.40784	0.0002226	-2.8217	-0.0015401	-2.4138	-0.0013175	545.8039821548546	21.558	0.10598	21.558	21.504	21.61	0					4	2	2	0	0	0	0.34667	1	6880	6880		62.107	0	1	347140			20396	7147	12925	12982	20705	20705					0.055248768654792
KGRGSKHLL	9	Unmodified	_KGRGSKHLL_					0	0	0		KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.308837890625	2	498.309075	994.603597	1.0292	0.00051284	-1.6681	-0.00083122	-0.63892	-0.00031838	498.30820213345635	13.758	0.35486	13.758	13.655	14.01	0					15	7	3	0	0	0	0.21263	1	3279	3279		53.351	9.2347	1	2858900			20397	8088	12926	12983	20706	20706					0.1060797752822964
KGRKSKRR	8	Unmodified	_KGRKSKRR_					0	0	0			REV__ENST00000590558.5_1_19:5692045-5712033:-|nuORF	REV__ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.33453369140625	2	508.333416	1014.65228	1.1389	0.00057893	1.1702	0.00059486	2.3091	0.0011738	508.3340050433016	19.766	0.16693	19.766	19.71	19.877	0					5	3	2	0	0	0	0.39125	1	6318	6318		60.972	13.315	1	1013800	+		20398	17245	12927	12984	20707	20707					0.1455389088798711
KGRLCKVSLC	10	Unmodified	_KGRLCKVSLC_					0	0	0		ENST00000523879.5_3_14:91580571-91625235:+|nuORF	ENST00000523879.5_3_14:91580571-91625235:+|nuORF	ENST00000523879.5_3_14:91580571-91625235:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.8141479492188	2	553.812279	1105.61	3.6202	0.0020049	-0.5826	-0.00032265	3.0376	0.0016822	553.8119827284387	20.369	0.26857	20.369	20.26	20.528	0					10	5	3	0	0	0	0.37692	1	6470	6470		58.782	7.4465	1	1260300			20399	10338	12928	12985	20708	20708					0.06142411373093637
KGRLKLPD	8	Unmodified	_KGRLKLPD_					0	0	0		EPHB1|p.G642D|1|0.24|ENSG00000154928|chr3:135192618-135192618|G/A|missense_variant	EPHB1|p.G642D|1|0.24|ENSG00000154928|chr3:135192618-135192618|G/A|missense_variant	EPHB1|p.G642D|1|0.24|ENSG00000154928|chr3:135192618-135192618|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7928466796875	2	463.792727	925.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.02	1	39.02	38.52	39.52	0								0	0	0	1.7419	1	14842	14842		29.15	6.1071	1				20400	11108	12929	12986	20709	20709					0.10513770405350442
KGRQAPTTVR	10	Unmodified	_KGRQAPTTVR_					0	0	0			REV__nc|ENSG00000162894|O60667-2|FCMR	REV__nc|ENSG00000162894|O60667-2|FCMR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3294067382812	2	557.327996	1112.64144	1.224	0.00068215	1.628	0.00090732	2.8519	0.0015895	557.3286794900974	35.441	0.22141	35.441	35.33	35.552	0					7	4	2	0	0	0	0.17315	1	13696	13696		82.75	8.4954	1	288680	+		20401	15845	12930	12987	20710	20710					0.08962443723021352
KGRRRLGQ	8	Unmodified	_KGRRRLGQ_					0	0	0		ENST00000562407.1_1_16:23695226-23699079:+|nuORF	ENST00000562407.1_1_16:23695226-23699079:+|nuORF	ENST00000562407.1_1_16:23695226-23699079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.805419921875	2	485.804491	969.59443	0.83642	0.00040634	1.587	0.00077099	2.4235	0.0011773	485.80515819504956	24.422	0.21745	24.422	24.312	24.53	0					9	4	3	0	0	0	0.46905	1	8413	8413		63.306	1.1989	1	722730			20402	10720	12931	12988	20711	20711					0.10841628962555205
KGRVKKGHAH	10	Unmodified	_KGRVKKGHAH_					0	0	0		HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2293701171875	3	373.228224	1116.66284	0.84382	0.00031494	1.7209	0.0006423	2.5647	0.00095724	373.22889428648267	16.854	0.16249	16.854	16.801	16.964	0					7	3	3	0	0	0	0.65895	1	4915	4915		27.047	5.3616	1	980050			20403	5216	12932	12989	20712	20712					0.109178735424166
KGRYRRKG	8	Unmodified	_KGRYRRKG_					0	0	0			REV__ENSG00000157916|ENST00000605895|RER1	REV__ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.81365966796875	2	510.812316	1019.61008	1.3844	0.00070717	1.1561	0.00059053	2.5405	0.0012977	510.8130010313731	19.682	0.16788	19.682	19.623	19.791	0					7	3	3	0	0	0	0.74405	1	6138	6138		25.45	25.45	1	1214000	+		20404	15671	12933	12990	20713	20713					0.10105915479596206
KGSAAKGT	8	Unmodified	_KGSAAKGT_					0	0	0		nc|ENSG00000164867|P29474-3|NOS3;nc|ENSG00000164867|P29474-2|NOS3;NOS3|p.A641Pfs*97|1|0.11|ENSG00000164867|chr7:151006986-151006986|G/-|frameshift_variant;NOS3|p.G843Afs*115|1|0.27|ENSG00000164867|chr7:151010123-151010123|C/-|frameshift_variant;ENSG00000164867|ENST00000297494|NOS3	nc|ENSG00000164867|P29474-3|NOS3	nc|ENSG00000164867|P29474-3|NOS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.20709228515625	2	360.205953	718.397353	1.4281	0.00051441	0.5785	0.00020838	2.0066	0.00072278	360.20608961160116	46.948	0.52269	46.948	46.698	47.221	0					53	29	2	0	0	0	0.79426	1	18025	18025		16.473	5.6076	1	552120			20405	5736	12934	12991	20714	20714					0.026889846290828245
KGSKEDELVA	10	Unmodified	_KGSKEDELVA_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.285888671875	2	538.285128	1074.5557	0.23376	0.00012583	1.7877	0.00096228	2.0214	0.0010881	538.2860471365901	17.935	0.23278	17.935	17.804	18.037	0					14	5	4	0	0	0	0.12896	1	5141	5141		90.37	5.4543	1	875100	+		20406	14666	12935	12992	20715	20715					0.021408140268476927
KGSKEDELVA	10	Unmodified	_KGSKEDELVA_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2870483398438	2	538.285128	1074.5557	-1.4505	-0.00078076	4.0577	0.0021842	2.6072	0.0014034	538.2873008585036	17.732	0.19378	17.732	17.588	17.781	0					7	4	2	0	0	0	0.097781	1	4474	4474		95.815	2.6197	1	150240	+		20407	14666	12935	12992	20716	20716					0.021408140268476927
KGSKEDELVA	10	Unmodified	_KGSKEDELVA_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2860717773438	2	538.285128	1074.5557	3.3759	0.0018172	-1.6405	-0.00088306	1.7354	0.00093415	538.2843791612418	17.906	0.411	17.906	17.649	18.06	0					21	8	4	0	0	0	0.011749	1	5268	5268		136.27	20.774	1	1040000	+		20408	14666	12935	12992	20717	20717					0.021408140268476927
KGSLLTDIKL	10	Unmodified	_KGSLLTDIKL_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.22882080078125	3	363.228897	1086.66486	0.48639	0.00017667	-0.51934	-0.00018864	-0.032946	-1.1967E-05	363.2286920884852	21.002	0.26365	21.002	20.896	21.16	0					13	5	4	0	0	0	0.45669	1	6906	6906		50.034	7.6954	1	866180			20409	4289	12936	12993	20718	20718					0.12499444716991093
KGSQKLVATI	10	Unmodified	_KGSQKLVATI_					0	0	0		tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8243408203125	2	522.824224	1043.63389	1.6654	0.00087071	-1.2967	-0.00067792	0.36873	0.00019278	522.8236576204522	27.341	0.22077	27.341	27.251	27.472	0					11	5	3	0	0	0	0.62235	1	9553	9553		31.53	0.96095	1	189050			20410	22996	12937	12994	20719	20719					0.1138229140274234
KGSSFKSAL	9	Unmodified	_KGSSFKSAL_					0	0	0			REV__ENST00000493892.5_1_1:26310515-26324519:-|nuORF	REV__ENST00000493892.5_1_1:26310515-26324519:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.760498046875	2	462.761092	923.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.917	1	34.917	34.417	35.417	0								0	0	0	0.33029	1	13495	13495		29.17	0.020503	1		+		20411	19742	12938	12995	20720	20720					0.04281784897466423
KGSSIRRREL	10	Unmodified	_KGSSIRRREL_					0	0	0			REV__ENSG00000140543|ENST00000268148|DET1	REV__ENSG00000140543|ENST00000268148|DET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.3609619140625	2	601.359828	1200.7051	3.0945	0.0018609	-0.45539	-0.00027385	2.6391	0.001587	601.3594861803446	27.886	0.36299	27.886	27.78	28.143	0					21	7	4	0	0	0	0.1725	1	10045	10045		101.25	33.759	1	7297000	+		20412	15082	12939	12996	20721	20721					0.11277804160135929
KGSSKSKNKE	10	Unmodified	_KGSSKSKNKE_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.80810546875	2	546.80402	1091.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.716	1	14.716	14.216	15.216	0								0	0	0	0.37602	1	3723	3723		37.812	2.1932	1		+		20413	14438	12940	12997	20722	20722					0.05135325012338399
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.827880859375	2	591.827495	1181.64044	0.91622	0.00054225	-0.41379	-0.00024489	0.50243	0.00029735	591.8272882293185	15.076	0.1506	15.076	15.023	15.174	0					8	3	3	0	0	0	0.00028927	1	3826	3826		147.3	21.061	1	1272000			20414	1704	12941	12998	20723	20723					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.88739013671875	3	394.887422	1181.64044	0.89956	0.00035522	-0.97972	-0.00038688	-0.08016	-3.1654E-05	394.8870365512273	15.076	0.10949	15.076	15.023	15.133	0					4	2	2	0	0	0	0.00076217	1	3827	3827		136.81	73.38	1	1117800			20415	1704	12941	12998	20724	20724					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	394.8872985839844	3	394.887422	1181.64044	3.4791	0.0013739	-3.5223	-0.0013909	-0.04319	-1.7055E-05	394.8860099120576	14.835	0.070516	14.835	14.801	14.872	0					4	2	2	0	0	0	0.28575	1	3288	3288		64.224	19.202	1	53104			20416	1704	12941	12998	20725	20725					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.8873596191406	3	394.887422	1181.64044	0.10961	4.3285E-05	-0.3568	-0.00014089	-0.24718	-9.7609E-05	394.8873115870901	15.105	0.16994	15.105	14.994	15.164	0					8	3	3	0	0	0	6.6028E-05	1	4051	4051		152.69	89.266	1	223920			20417	1704	12941	12998	20726	20726					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	591.8292236328125	2	591.827495	1181.64044	0.6512	0.0003854	2.0377	0.001206	2.6889	0.0015914	591.8281410496903	14.902	0.088623	14.902	14.835	14.923	0					7	4	2	0	0	0	0.14512	1	3246	3246		80.916	24.482	1	66546			20418	1704	12941	12998	20727	20727					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.8275756835938	2	591.827495	1181.64044	0.085116	5.0374E-05	0.33267	0.00019688	0.41779	0.00024726	591.8276178495788	15.07	0.16874	15.07	14.961	15.13	0					8	3	3	0	0	0	6.2438E-06	1	3879	3879		167.93	74.336	1	546530			20419	1704	12941	12998	20728	20728					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.8871154785156	3	394.887422	1181.64044	-0.65276	-0.00025777	0.43951	0.00017356	-0.21325	-8.421E-05	394.8875347053064	15.07	0.2167	15.07	14.961	15.178	0					13	4	4	0	0	0	3.4317E-06	1	3880	3880		187.16	103.51	1	481110			20420	1704	12941	12998	20729	20729					0.05688184563427967
KGTDIMYTG	9	Unmodified	_KGTDIMYTG_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000463551.1_1_X:118604271-118605018:+|nuORF	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.23541259765625	2	493.236593	984.458632	-0.50456	-0.00024887	-2.1284	-0.0010498	-2.6329	-0.0012987	493.2356658737063	11.945	0.097865	11.945	11.877	11.975	0					7	3	3	0	0	0	0.5879	1	2415	2415		23.042	4.7181	1	445360			20421	952	12942	12999	20730	20730					-0.03421871453792846
KGTGTAGLIVV	11	Unmodified	_KGTGTAGLIVV_					0	0	0			REV__TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	REV__TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.81475830078125	2	508.310949	1014.60735	1.3166	0.00066926	-1.5674	-0.00079673	-0.25077	-0.00012747	508.31022183984027	41.56	0.41267	41.56	41.477	41.889	0					23	11	4	0	0	0	0.6208	1	16652	16652		40.778	14.085	1	1449500	+		20422	13004	12943	13000	20731	20731					0.1006260251143658
KGTHVGIRL	9	Unmodified	_KGTHVGIRL_					0	0	0			REV__nc|ENSG00000159899|P20594-2|NPR2	REV__nc|ENSG00000159899|P20594-2|NPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.8031311035156	2	490.803626	979.592698	-1.3009	-0.00063849	0.40692	0.00019972	-0.89399	-0.00043877	490.80376618257776	17.475	0.069315	17.475	17.429	17.498	0					4	2	2	0	0	0	0.30951	1	4384	4384		49.442	3.4896	1	96406	+		20423	21088	12944	13001	20732	20732					0.10208575153933452
KGTITFSTTR	10	Unmodified	_KGTITFSTTR_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	371.20947265625	3	371.208384	1110.60332	2.6642	0.00098899	1.0578	0.00039267	3.7221	0.0013817	371.2086175863401	32.106	0.1371	32.106	32.028	32.165	0					11	5	3	0	0	0	0.53919	1	10356	10356		41.08	8.3295	1	106750			20424	5768	12945	13002	20733	20733					0.05244513017692043
KGTKESRSPG	10	Unmodified	_KGTKESRSPG_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.78369140625	2	523.783087	1045.55162	0.089963	4.7121E-05	0.69537	0.00036422	0.78533	0.00041134	523.7833949475	12.925	0.10632	12.925	12.86	12.967	0					6	3	2	0	0	0	0.21754	1	2819	2819		77.318	4.4383	1	382520	+		20425	21237	12946	13003	20734	20734					0.030667693238001448
KGTKKDPNAP	10	Unmodified	_KGTKKDPNAP_					0	0	0		HMGB2|p.K88T|1|0.3|ENSG00000164104|chr4:173333102-173333102|T/G|missense_variant	HMGB2|p.K88T|1|0.3|ENSG00000164104|chr4:173333102-173333102|T/G|missense_variant	HMGB2|p.K88T|1|0.3|ENSG00000164104|chr4:173333102-173333102|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2963256835938	2	528.29583	1054.57711	2.1808	0.0011521	-1.6097	-0.00085041	0.57109	0.0003017	528.2950333309449	14.021	0.17879	14.021	13.897	14.076	0					6	4	2	0	0	0	0.14151	1	3337	3337		88.177	15.934	1	166750			20426	11212	12947	13004	20735	20735					0.052002438462295686
KGTKKDPNAP	10	Unmodified	_KGTKKDPNAP_					0	0	0		HMGB2|p.K88T|1|0.3|ENSG00000164104|chr4:173333102-173333102|T/G|missense_variant	HMGB2|p.K88T|1|0.3|ENSG00000164104|chr4:173333102-173333102|T/G|missense_variant	HMGB2|p.K88T|1|0.3|ENSG00000164104|chr4:173333102-173333102|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.295654296875	2	528.29583	1054.57711	1.6294	0.00086078	-1.0872	-0.00057434	0.5422	0.00028644	528.2954513855875	13.953	0.16148	13.953	13.848	14.01	0					8	3	3	0	0	0	0.36476	1	3376	3376		60.118	12.461	1	99020			20427	11212	12947	13004	20736	20736					0.052002438462295686
KGTSAKIF	8	Unmodified	_KGTSAKIF_					0	0	0			REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.2526550292969	2	426.252903	850.491253	-0.22512	-9.5958E-05	0.15359	6.5468E-05	-0.071532	-3.0491E-05	426.2529783942044	14.279	0.10683	14.279	14.224	14.331	0					9	4	3	0	0	0	0.5676	1	2914	2914		53.351	7.3995	1	500810	+		20428	21889	12948	13005	20737	20737					0.06002703731371639
KGTSAKIF	8	Unmodified	_KGTSAKIF_					0	0	0			REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.252685546875	2	426.252903	850.491253	-1.035	-0.00044116	0.51363	0.00021893	-0.52134	-0.00022222	426.25308812067135	14.257	0.11241	14.257	14.221	14.333	0					7	3	3	0	0	0	0.46905	1	3066	3066		63.306	9.9548	1	209560	+		20429	21889	12948	13005	20738	20738					0.06002703731371639
KGTSAKIF	8	Unmodified	_KGTSAKIF_					0	0	0			REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.25286865234375	2	426.252903	850.491253	0.37137	0.0001583	-0.49871	-0.00021258	-0.12734	-5.4279E-05	426.25269304113766	14.533	0.10196	14.533	14.48	14.582	0					4	2	2	0	0	0	0.5676	1	3801	3801		53.351	2.016	1	460550	+		20430	21889	12948	13005	20739	20739					0.06002703731371639
KGTSARRLTV	10	Unmodified	_KGTSARRLTV_					0	0	0			REV__SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant	REV__SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.33447265625	2	544.830372	1087.64619	1.103	0.00060093	3.7322	0.0020334	4.8352	0.0026343	545.3339384801693	17.232	0.092247	17.232	17.189	17.281	0					4	2	2	0	0	0	0.61823	1	4268	4268		20.837	5.9723	1	53913	+		20431	16166	12949	13006	20740	20740					0.10587327865778207
KGTTKGLG	8	Unmodified	_KGTTKGLG_					0	0	0			REV__ENST00000487466.5_1_3:42642209-42661208:+|nuORF	REV__ENST00000487466.5_1_3:42642209-42661208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.2293701171875	2	381.229428	760.444303	0.0086713	3.3057E-06	-0.10543	-4.0192E-05	-0.096757	-3.6887E-05	381.2293523945575	13.486	0.10472	13.486	13.428	13.533	0					11	5	4	0	0	0	0.44433	1	2648	2648		65.803	10.299	1	318220	+		20432	14086	12950	13007	20741	20741					0.05449844180236596
KGTVKPERIGE	11	Unmodified	_KGTVKPERIGE_					0	0	0			REV__nc|ENSG00000111641|P46087-2|NOP2	REV__nc|ENSG00000111641|P46087-2|NOP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.3485107421875	2	607.348594	1212.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.573	1	13.573	13.073	14.073	0								0	0	0	0.3769	1	3182	3182		41.427	2.673	1		+		20433	13973	12951	13008	20742	20742					0.08480159971850298
KGVAGLLQRF	10	Unmodified	_KGVAGLLQRF_					0	0	0		ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.8323974609375	2	544.832383	1087.65021	1.1799	0.00064286	-0.57897	-0.00031544	0.60096	0.00032742	544.8325071643851	17.186	0.10405	17.186	17.134	17.238	0					5	3	2	0	0	0	0.66699	1	4063	4063		14.865	7.6715	1	53051			20434	5961	12952	13009	20743	20743					0.10989417359519393
KGVEVQLVPDQ	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KGVEVQLVPDQ_					1	0	0			REV__BBS9|p.R75Q|1|0.11|ENSG00000122507|chr7:33152812-33152812|G/A|missense_variant	REV__BBS9|p.R75Q|1|0.11|ENSG00000122507|chr7:33152812-33152812|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.3403930664062	2	627.340435	1252.66632	-0.035775	-2.2443E-05	0.52276	0.00032795	0.48699	0.00030551	627.340505987346	25.13	0.11552	25.13	25.073	25.188	0					6	2	3	0	0	0	0.38515	1	8893	8893		53.089	7.1167	1	280560	+		20435	12277	12953	13010	20744	20744					0.050090340150973134
KGVGVHAG	8	Unmodified	_KGVGVHAG_					0	0	0			REV__ENSG00000108826|ENST00000225969|MRPL27	REV__ENSG00000108826|ENST00000225969|MRPL27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.7087097167969	2	362.708663	723.402772	0.10541	3.8235E-05	-0.1609	-5.8359E-05	-0.055483	-2.0124E-05	362.708613596636	19.254	0.083433	19.254	19.214	19.297	0					4	2	2	0	0	0	0.67475	1	4950	4950		37.028	0	1	312390	+		20436	13887	12954	13011	20745	20745					0.030007082115616868
KGVKAVDPK	9	Unmodified	_KGVKAVDPK_					0	0	0		SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant;ENST00000554467.5_1_12:57626939-57627538:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2922668457031	2	471.292559	940.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.203	1	17.203	16.703	17.703	0								0	0	0	0.27025	1	4239	4239		40.778	1.972	1				20437	22393	12955	13012	20746	20746					0.0979035068551184
KGVPASSSLPL	11	Unmodified	_KGVPASSSLPL_					0	0	0			REV__ENSG00000131864|ENST00000254181|USP29	REV__ENSG00000131864|ENST00000254181|USP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.3080444335938	2	528.308406	1054.60226	0.10837	5.7253E-05	0.58771	0.00031049	0.69608	0.00036775	528.3086296180186	40.088	0.35658	40.088	39.932	40.288	0					32	14	3	0	0	0	0.70609	1	15248	15248		27.047	1.5971	1	464890	+		20438	14637	12956	13013	20747	20747					0.07714298648807016
KGVPGRAAGG	10	Unmodified	_KGVPGRAAGG_					0	0	0			REV__chr20:45814470-45815854|444|10.08|0.42|4.6|+|ENST00000405520|UBE2C,UBE2C	REV__chr20:45814470-45815854|444|10.08|0.42|4.6|+|ENST00000405520|UBE2C,UBE2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.25164794921875	2	435.251226	868.487899	0.83091	0.00036166	-0.63891	-0.00027809	0.192	8.3567E-05	435.2508543198939	44.938	1.1598	44.938	44.628	45.787	0					101	66	2	0	0	0	0.64178	1	17490	17490		29.15	2.4566	1	228920	+		20439	12485	12957	13014	20748	20748					0.048394536773685104
KGWKPRRK	8	Unmodified	_KGWKPRRK_					0	0	0		ADAM9|p.Y678Wfs*15|1|0.05|ENSG00000168615|chr8:39083037-39083038|-/GGAAACC|frameshift_variant	ADAM9|p.Y678Wfs*15|1|0.05|ENSG00000168615|chr8:39083037-39083038|-/GGAAACC|frameshift_variant	ADAM9|p.Y678Wfs*15|1|0.05|ENSG00000168615|chr8:39083037-39083038|-/GGAAACC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	352.5572814941406	3	352.557682	1054.65122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.071	1	18.071	17.571	18.571	0								0	0	0	1.7419	1	4441	4441		51.335	2.7339	1				20440	55	12958	13015	20749	20749					0.12607676519064626
KGWQLPPR	8	Unmodified	_KGWQLPPR_					0	0	0			REV__ENSG00000144843|ENST00000357003|ADPRH	REV__ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.283447265625	2	491.285069	980.555585	-2.7182	-0.0013354	-1.4923	-0.00073312	-4.2104	-0.0020685	491.28437815374366	14.712	0.9402	14.712	14.595	15.535	0					67	36	3	0	0	0	0.70055	1	3276	3276		33.516	1.5607	1	601790	+		20441	15248	12959	13016	20750	20750					0.06452903608180804
KGWWVSHHY	9	Unmodified	_KGWWVSHHY_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	600.2926635742188	2	600.290882	1198.56721	-0.57743	-0.00034663	-0.25077	-0.00015054	-0.8282	-0.00049716	600.2906815016722	37.953	1.1177	37.953	37.843	38.961	0					139	61	5	0	0	0	0.50461	1	13098	13098		31.955	6.5047	1	3317600			20442	7268	12960	13017	20751	20751					-0.024128993684826128
KGYATGLIGK	10	Unmodified	_KGYATGLIGK_					0	0	0		ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2976379394531	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.258	1	44.258	43.758	44.758	0								0	0	0	0.4201	1	17734	17734		22.58	1.6327	1				20443	5215	12961	13018	20752	20752					0.07810333339955378
KGYEGKTHKG	10	Unmodified	_KGYEGKTHKG_					0	0	0		LYAR|p.K286Rfs*2|1|0.4|ENSG00000145220|chr4:4273645-4273645|T/-|frameshift_variant;LYAR|p.L319Vfs*10|1|0.04|ENSG00000145220|chr4:4268580-4268581|-/AATGTAC|frameshift_variant;ENSG00000145220|ENST00000343470|LYAR	LYAR|p.K286Rfs*2|1|0.4|ENSG00000145220|chr4:4273645-4273645|T/-|frameshift_variant	LYAR|p.K286Rfs*2|1|0.4|ENSG00000145220|chr4:4273645-4273645|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.7957763671875	2	552.793455	1103.57236	1.3206	0.00073004	0.1846	0.00010205	1.5052	0.00083208	552.7932265517017	19.428	0.10213	19.428	19.361	19.463	0					6	3	2	0	0	0	0.63224	1	5031	5031		30.318	0	1	84091			20444	4661	12962	13019	20753	20753					0.024713597034633494
KGYGVATPK	9	Unmodified	_KGYGVATPK_					0	0	0		ENSG00000152578|ENST00000282499|GRIA4;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3	ENSG00000152578|ENST00000282499|GRIA4	ENSG00000152578|ENST00000282499|GRIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.763671875	2	460.763635	919.512717	-0.84333	-0.00038858	0.4325	0.00019928	-0.41084	-0.0001893	460.76385708990085	21.062	0.5625	21.062	20.645	21.208	0					22	11	3	0	0	0	0.13267	1	6909	6909		71.877	9.7701	1	217400			20445	5018	12963	13020	20754	20754					0.049740887600819406
KGYTEVLKL	9	Unmodified	_KGYTEVLKL_					0	0	0		nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;PPP1R12A|p.N540Ifs*23|1|0.49|ENSG00000058272|chr12:79807262-79807262|T/-|frameshift_variant;ENST00000551191.1_1_12:80222078-80226230:-|nuORF	nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.81396484375	2	525.813325	1049.6121	1.6275	0.00085577	-0.95666	-0.00050303	0.67086	0.00035275	525.81273865217	34.433	0.74696	34.433	34.037	34.784	0					38	15	6	0	0	0	0.18505	1	13185	13185		65.465	1.2581	1	5930300			20446	1301	12964	13021	20755	20755					0.08927486654192762
KGYTPYPG	8	Unmodified	_KGYTPYPG_					0	0	0		RYR1|p.E689K|1|0.2|ENSG00000196218|chr19:38458190-38458190|G/A|missense_variant	RYR1|p.E689K|1|0.2|ENSG00000196218|chr19:38458190-38458190|G/A|missense_variant	RYR1|p.E689K|1|0.2|ENSG00000196218|chr19:38458190-38458190|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.72137451171875	2	441.721436	881.428318	0.09645	4.2604E-05	-0.10031	-4.4311E-05	-0.0038645	-1.7071E-06	441.72137273219994	11.748	0.15799	11.748	11.637	11.795	0					6	4	2	0	0	0	0.78122	1	2494	2494		8.2313	0	1	30755			20447	22369	12965	13022	20756	20756					-0.017138620566697682
KHANIVTLH	9	Unmodified	_KHANIVTLH_					0	0	0		nc|ENSG00000117266|Q07002-3|CDK18;ENST00000476153.6_1_1:205492708-205496295:+|nuORF;ENST00000428400.5_1_X:47082893-47085639:+|nuORF;CDK18|p.T391Qfs*8|1|0.36|ENSG00000117266|chr1:205529327-205529327|C/-|frameshift_variant;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;ENST00000522234.5_1_X:47078210-47085639:+|nuORF;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	nc|ENSG00000117266|Q07002-3|CDK18;ENSG00000102225|ENST00000357227|CDK16	ENSG00000102225|ENST00000357227|CDK16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.8013916015625	2	516.801083	1031.58761	1.5413	0.00079654	-0.91097	-0.00047079	0.63031	0.00032575	516.8004257277464	25.992	0.4492	25.992	25.701	26.151	0					22	7	4	0	0	0	0.37197	1	9113	9113		44.117	1.7207	1	1462600			20448	11495;2159	12966	13023	20757	20757					0.07308271291344681
KHDIRQPR	8	Unmodified	_KHDIRQPR_					0	0	0		sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1;sp|F5HB40|UL84_HCMVMProteinUL84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL84PE=3SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.30224609375	2	525.301781	1048.58901	1.6269	0.00085463	-0.6033	-0.00031691	1.0236	0.00053771	525.301580020277	12.534	0.90237	12.534	12.446	13.349	0					29	20	3	0	0	0	0.58597	1	2681	2681		31.955	0	1	2930700			20449	22439	12967	13024	20758	20758					0.06665905380054937
KHECFRIEA	9	Unmodified	_KHECFRIEA_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9;REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7835083007812	2	566.782033	1131.54951	1.9314	0.0010947	0.77072	0.00043683	2.7021	0.0015315	566.7825260389526	19.373	0.16565	19.373	19.313	19.479	0					9	3	4	0	0	0	0.15558	1	6127	6127		69.628	14.851	1	942490	+		20450	14823;12704	12968	13025	20759	20759					-0.010999826856505024
KHEKGHYE	8	Unmodified	_KHEKGHYE_					0	0	0			REV__ENSG00000137822|ENST00000564079|TUBGCP4	REV__ENSG00000137822|ENST00000564079|TUBGCP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2513427734375	2	514.251423	1026.48829	0.68991	0.00035479	-0.32352	-0.00016637	0.36639	0.00018842	514.2511014654546	25.115	0.80953	25.115	25.008	25.817	0					31	15	3	0	0	0	0.5676	1	8885	8885		53.351	9.2347	1	497840	+		20451	14940	12969	13026	20760	20760					-0.02389171393451761
KHIEVRQVV	9	Unmodified	_KHIEVRQVV_					0	0	0			REV__ENSG00000213977|ENST00000225525|TAX1BP3	REV__ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.3359375	2	554.33529	1106.65603	1.3123	0.00072744	-0.41722	-0.00023128	0.89505	0.00049616	554.3350610851982	18.035	0.16087	18.035	17.945	18.106	0					9	4	3	0	0	0	0.17854	1	4416	4416		64.207	2.0999	1	647360	+		20452	17574	12970	13027	20761	20761					0.10696515871177326
KHIPRFQQST	10	Unmodified	_KHIPRFQQST_					0	0	0		ENST00000337304.2_1_22:39917262-39917451:+|nuORF	ENST00000337304.2_1_22:39917262-39917451:+|nuORF	ENST00000337304.2_1_22:39917262-39917451:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.5641174316406	3	414.563161	1240.66765	3.4153	0.0014159	-2.8255	-0.0011713	0.58984	0.00024453	414.5623324128973	17.846	0.20816	17.846	17.77	17.978	0					7	5	2	0	0	0	0.66699	1	4565	4565		26.063	0.9374	1	51196			20453	8702	12971	13028	20762	20762					0.05694712894501208
KHKKLPEEL	9	Unmodified	_KHKKLPEEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.3380126953125	2	561.337498	1120.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.948	1	16.948	16.448	17.448	0								0	0	0	0.29774	1	4125	4125		35.618	3.6634	1				20454	2899	12972	13029	20763	20763					0.10493980294086214
KHKKPLSA	8	Unmodified	_KHKKPLSA_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.7869873046875	2	454.787444	907.560336	-0.57191	-0.0002601	0.097503	4.4343E-05	-0.47441	-0.00021575	454.78741367432633	28.117	0.83371	28.117	27.692	28.526	0					36	20	3	0	0	0	0.64096	1	9836	9836		42.474	7.2737	1	707170			20455	11455	12973	13030	20764	20764					0.10285787750945019
KHKKQSGG	8	Unmodified	_KHKKQSGG_					0	0	0		tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.251220703125	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.697	1	47.697	47.197	48.197	0								0	0	0	1.7419	1	19018	19018		24.203	1.1603	1				20456	23014	12974	13031	20765	20765					0.04839453677391248
KHKTKHKK	8	Unmodified	_KHKTKHKK_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.8341064453125	2	517.832717	1033.65088	3.3356	0.0017273	-0.4779	-0.00024747	2.8577	0.0014798	517.8323676300075	34.268	1.9445	34.268	34.069	36.013	0					96	39	5	0	0	0	0.51931	1	13081	13081		56.721	14.247	1	29626000	+		20457	16193	12975	13032	20766	20766					0.13540256799205963
KHLATQTP	8	Unmodified	_KHLATQTP_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.25347900390625	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.121	1	12.121	11.621	12.621	0								0	0	0	1.7419	1	2506	2506		57.811	2.3071	1				20458	22500	12976	13033	20767	20767					0.04084918100284085
KHLCFVSL	8	Unmodified	_KHLCFVSL_					0	0	0			REV__nc|ENSG00000168398|P30411-2|BDKRB2	REV__nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.763427734375	2	473.762581	945.510608	0.67489	0.00031974	1.1624	0.00055068	1.8373	0.00087042	473.763052279618	30.62	0.26358	30.62	30.517	30.78	0					13	5	3	0	0	0	0.41952	1	11369	11369		68.485	68.485	1	1313100	+		20459	16255	12977	13034	20768	20768					0.035673367506319664
KHLNELPEL	9	Unmodified	_KHLNELPEL_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.3087768554688	2	546.806031	1091.59751	3.8082	0.0020823	-0.56373	-0.00030825	3.2445	0.0017741	546.8059997935432	25.095	1.1059	25.095	24.595	25.701	0					48	18	4	0	0	0	0.20551	1	8655	8655		60.972	9.6365	1	2864800	+		20460	16387	12978	13035	20769	20769					0.05537414506034111
KHQANIRRQ	9	Unmodified	_KHQANIRRQ_					0	0	0			REV__PCCB|p.D56N|1|0.63|ENSG00000114054|chr3:136250541-136250541|G/A|missense_variant	REV__PCCB|p.D56N|1|0.63|ENSG00000114054|chr3:136250541-136250541|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.2240905761719	3	384.22325	1149.64792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.341	1	17.341	16.841	17.841	0								0	0	0	0.3119	1	4875	4875		32.812	1.1781	1		+		20461	21340	12979	13036	20770	20770					0.0790838167442871
KHRLGVRSS	9	Unmodified	_KHRLGVRSS_					0	0	0			REV__ENSG00000141429|ENST00000269195|GALNT1	REV__ENSG00000141429|ENST00000269195|GALNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3118896484375	2	520.309606	1038.60466	1.6801	0.00087416	0.49242	0.00025621	2.1725	0.0011304	520.309918906733	37.39	1.2156	37.39	36.93	38.145	0					60	38	2	0	0	0	0.39215	1	14468	14468		42.396	1.8235	1	323820	+		20462	15114	12980	13037	20771	20771					0.08690191897130717
KHRQPKITI	9	Unmodified	_KHRQPKITI_					0	0	0			REV__tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	REV__tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.2372131347656	3	374.236497	1119.68766	3.2324	0.0012097	-1.0494	-0.00039272	2.183	0.00081698	374.23612446824603	36.707	0.51271	36.707	36.496	37.008	0					22	10	4	0	0	0	0.46194	1	14278	14278		36.447	3.6343	1	994990	+		20463	21983	12981	13038	20772	20772					0.13260508625126022
KHRTAAEAR	9	Unmodified	_KHRTAAEAR_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7942504882812	2	520.291414	1038.56827	3.3709	0.0017538	-0.54363	-0.00028284	2.8272	0.001471	520.2909283724775	36.856	0.45547	36.856	36.698	37.154	0					22	9	4	0	0	0	0.42902	2	14394	14392;14394		39.253	10.997	1	3006300	+		20464	13192	12982	13039	20773;20774	20774					0.05053315000395742
KHSLASRHR	9	Unmodified	_KHSLASRHR_					0	0	0		ENST00000343605.4_1_22:31032071-31032353:+|nuORF	ENST00000343605.4_1_22:31032071-31032353:+|nuORF	ENST00000343605.4_1_22:31032071-31032353:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.54498291015625	3	364.544212	1090.61081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.323	1	25.323	24.823	25.823	0								0	0	0	0.3428	1	7864	7864		20.837	0	1				20465	8749	12983	13040	20775	20775					0.06912710128653998
KHTEATDHSH	10	Unmodified	_KHTEATDHSH_					0	0	0		ENST00000498097.5_1_2:99770790-99770877:-|nuORF	ENST00000498097.5_1_2:99770790-99770877:-|nuORF	ENST00000498097.5_1_2:99770790-99770877:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.7666015625	2	581.765426	1161.5163	-0.016469	-9.5813E-06	2.0237	0.0011773	2.0072	0.0011677	581.7662039773179	29.969	0.16581	29.969	29.884	30.05	0					10	4	3	0	0	0	0.56931	1	10767	10767		37.812	7.3079	1	216170			20466	10134	12984	13041	20776	20776					-0.057998932039936335
KHVHRLLMS	9	Unmodified	_KHVHRLLMS_					0	0	0		ENST00000540670.6_1_19:5720433-5720526:-|nuORF	ENST00000540670.6_1_19:5720433-5720526:-|nuORF	ENST00000540670.6_1_19:5720433-5720526:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8236083984375	2	560.824035	1119.63352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.592	1	13.592	13.092	14.092	0								0	0	0	0.36266	1	3191	3191		21.96	2.5999	1				20467	10540	12985	13042	20777	20777					0.07848593201924814
KHVMKNVS	8	Unmodified	_KHVMKNVS_					0	0	0			REV__ENST00000602537.5_1_17:11984679-12043167:+|nuORF	REV__ENST00000602537.5_1_17:11984679-12043167:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7630310058594	2	471.763112	941.511671	-0.59934	-0.00028275	1.3449	0.00063446	0.74552	0.00035171	471.7636285261774	19.207	0.15179	19.207	19.11	19.262	0					5	3	2	0	0	0	0.7126	1	5745	5745		31.955	4.0726	1	707750	+		20468	13117	12986	13043	20778	20778					0.03857551119540403
KHVRSRPGA	9	Unmodified	_KHVRSRPGA_					0	0	0		ENST00000373425.7_1_9:129871009-129884789:-|nuORF	ENST00000373425.7_1_9:129871009-129884789:-|nuORF	ENST00000373425.7_1_9:129871009-129884789:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2969055175781	2	504.296499	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.069	1	40.069	39.569	40.569	0								0	0	0	0.29774	1	15271	15271		35.618	6.4687	1				20469	8995	12987	13044	20779	20779					0.07541922725658878
KHYSKNDLL	9	Unmodified	_KHYSKNDLL_					0	0	0			REV__VPS13D|p.S3410Y|1|0.04|ENSG00000048707|chr1:12362807-12362807|C/A|missense_variant	REV__VPS13D|p.S3410Y|1|0.04|ENSG00000048707|chr1:12362807-12362807|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.3052368164062	2	559.303655	1116.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.509	1	16.509	16.009	17.009	0								0	0	0	0.28996	1	3930	3930		37.159	3.6435	1		+		20470	22278	12988	13045	20780	20780					0.03912530363277256
KIADLMQF	8	Unmodified	_KIADLMQF_					0	0	0		nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19;nc|ENSG00000213390|Q14CB8-5|ARHGAP19	nc|ENSG00000213390|Q14CB8-6|ARHGAP19	nc|ENSG00000213390|Q14CB8-6|ARHGAP19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.51019287109375	3	322.509006	964.505189	2.9939	0.00096557	0.85357	0.00027528	3.8475	0.0012409	322.50923586646275	21.214	0.16175	21.214	21.11	21.271	0					6	3	2	0	0	0	0.5676	1	6885	6885		45.972	0	1	1436100			20471	7786	12989	13046	20781	20781					0.021516131681551087
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.7846984863281	2	506.784044	1011.55354	0.81647	0.00041377	-0.64657	-0.00032767	0.1699	8.6103E-05	506.78387246527615	20.886	0.14883	20.886	20.814	20.962	0					11	5	3	0	0	0	0.14578	1	5645	5645		68.846	14.07	1	152650			20472	3804	12990	13047	20782	20782					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.1917419433594	3	338.191788	1011.55354	0.66473	0.0002248	-0.84564	-0.00028599	-0.18091	-6.1182E-05	338.19156044763093	21.18	0.23064	21.18	21.093	21.323	0					17	5	4	0	0	0	0.11898	1	6683	6683		91.265	44.808	1	2277600			20473	3804	12990	13047	20783	20783					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7842712402344	2	506.784044	1011.55354	0.85352	0.00043255	-0.89535	-0.00045375	-0.041823	-2.1195E-05	506.78365699532054	21.179	0.26942	21.179	21.093	21.362	0					14	6	4	0	0	0	0.022525	1	6686	6686		117.81	18.436	1	1936700			20474	3804	12990	13047	20784	20784					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.78338623046875	2	506.784044	1011.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.882	1	20.882	20.382	21.382	0								0	0	0	0.11159	1	5904	5904		68.846	8.7279	1				20475	3804	12990	13047	20785	20785					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7839660644531	2	506.784044	1011.55354	1.0971	0.00055598	-1.0625	-0.00053848	0.034544	1.7506E-05	506.78347988985166	21.265	0.31337	21.265	21.011	21.324	0					12	6	2	0	0	0	0.014413	1	6942	6942		131.62	46.701	1	1460800			20476	3804	12990	13047	20786	20786					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.1916809082031	3	338.191788	1011.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.096	1	21.096	20.596	21.596	0								0	0	0	0.19847	1	6941	6941		66.962	24.098	1				20477	3804	12990	13047	20787	20787					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7843322753906	2	506.784044	1011.55354	0.29096	0.00014746	-0.6071	-0.00030767	-0.31614	-0.00016022	506.78393719392585	20.958	0.11662	20.958	20.893	21.009	0					5	3	2	0	0	0	0.12278	1	6001	6001		74.165	10.859	1	76085			20478	3804	12990	13047	20788	20788					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7840576171875	2	506.784044	1011.55354	0.097475	4.9399E-05	-0.31198	-0.00015811	-0.2145	-0.00010871	506.7839664226402	20.984	0.24879	20.984	20.919	21.168	0					10	6	2	0	0	0	0.02429	1	5994	5994		114.89	29.734	1	352570			20479	3804	12990	13047	20789	20789					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.52593994140625	3	338.191788	1011.55354	-0.048986	-1.6567E-05	-0.18496	-6.2553E-05	-0.23395	-7.912E-05	338.1917411089512	20.984	0.1591	20.984	20.919	21.078	0					10	4	3	0	0	0	0.40353	1	5996	5996		56.632	25.102	1	446640			20480	3804	12990	13047	20790	20790					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7839660644531	2	506.784044	1011.55354	-0.2133	-0.0001081	0.035278	1.7878E-05	-0.17802	-9.0217E-05	506.7840103949648	21.102	0.2143	21.102	20.992	21.206	0					8	4	2	0	0	0	0.019258	1	6824	6824		123.21	43.269	1	1177100			20481	3804	12990	13047	20791	20791					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.19171142578125	3	338.191788	1011.55354	1.5869	0.00053668	-2.0439	-0.00069123	-0.45699	-0.00015455	338.1911055625267	21.085	0.4109	21.085	20.976	21.387	0					15	8	3	0	0	0	0.095583	1	6818	6818		106.88	44.773	1	2785200			20482	3804	12990	13047	20792	20792					0.048221068080579244
KIADMGHLK	9	Unmodified	_KIADMGHLK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7839660644531	2	506.784044	1011.55354	1.2705	0.00064389	-1.0926	-0.00055371	0.17794	9.0178E-05	506.78347895361316	21.085	0.36243	21.085	20.976	21.338	0					13	7	2	0	0	0	0.021015	1	6819	6819		120.31	34.946	1	2212500			20483	3804	12990	13047	20793	20793					0.048221068080579244
KIAIGLGK	8	Unmodified	_KIAIGLGK_					0	0	0			REV__NIPAL1|p.S365Nfs*17|1|0.05|ENSG00000163293|chr4:48036032-48036033|-/ATAAGATG|frameshift_variant	REV__NIPAL1|p.S365Nfs*17|1|0.05|ENSG00000163293|chr4:48036032-48036033|-/ATAAGATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.2733154296875	2	400.273638	798.532724	0.06692	2.6786E-05	-0.16603	-6.6456E-05	-0.099105	-3.9669E-05	400.2735265812318	33.822	0.20049	33.822	33.69	33.891	0					9	5	2	0	0	0	0.59411	1	12970	12970		50.025	7.5501	1	77120	+		20484	15868	12991	13048	20794	20794					0.12539884490706754
KIAINISVE	9	Unmodified	_KIAINISVE_					0	0	0			REV__ENSG00000082212|ENST00000321341|ME2	REV__ENSG00000082212|ENST00000321341|ME2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7973327636719	2	493.797675	985.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.476	1	34.476	33.976	34.976	0								0	0	0	0.21054	1	13218	13218		49.442	3.4896	1		+		20485	13314	12992	13049	20795	20795					0.08742913620108084
KIAKDSNEI	9	Unmodified	_KIAKDSNEI_					0	0	0			REV__nc|ENSG00000112208|O95816-2|BAG2	REV__nc|ENSG00000112208|O95816-2|BAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28204345703125	2	509.282389	1016.55022	1.0732	0.00054656	-1.5435	-0.0007861	-0.47036	-0.00023954	509.2815869699451	20.364	0.11423	20.364	20.305	20.419	0					4	2	2	0	0	0	0.023928	1	6316	6316		115.49	33.254	1	66157	+		20486	13993	12993	13050	20796	20796					0.04261135235049096
KIAKQIVQK	9	Unmodified	_KIAKQIVQK_					0	0	0		ENST00000477954.5_1_21:46191294-46194726:-|nuORF;ENST00000481546.1_1_21:46191294-46193735:-|nuORF;ENST00000491513.5_1_21:46191294-46199096:-|nuORF;nc|ENSG00000184787|P60604-2|UBE2G2;ENST00000497630.5_1_21:46191294-46221727:-|nuORF;ENSG00000184787|ENST00000345496|UBE2G2	ENST00000477954.5_1_21:46191294-46194726:-|nuORF	ENST00000477954.5_1_21:46191294-46194726:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.3507080078125	2	528.350409	1054.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.115	1	16.115	15.615	16.615	0								0	0	0	0.2591	1	3801	3801		42.396	0.96952	1				20487	7036	12994	13051	20797	20797					0.1611087453638902
KIAKQIVQK	9	Unmodified	_KIAKQIVQK_					0	0	0		ENST00000477954.5_1_21:46191294-46194726:-|nuORF;ENST00000481546.1_1_21:46191294-46193735:-|nuORF;ENST00000491513.5_1_21:46191294-46199096:-|nuORF;nc|ENSG00000184787|P60604-2|UBE2G2;ENST00000497630.5_1_21:46191294-46221727:-|nuORF;ENSG00000184787|ENST00000345496|UBE2G2	ENST00000477954.5_1_21:46191294-46194726:-|nuORF	ENST00000477954.5_1_21:46191294-46194726:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.35107421875	2	528.350409	1054.68626	-1.1814	-0.00062419	2.2245	0.0011753	1.0431	0.00055114	528.3515649490209	16.121	0.097843	16.121	16.056	16.154	0					6	3	2	0	0	0	0.17854	1	3759	3759		64.207	5.4253	1	100940			20488	7036	12994	13051	20798	20798					0.1611087453638902
KIAKQIVQK	9	Unmodified	_KIAKQIVQK_					0	0	0		ENST00000477954.5_1_21:46191294-46194726:-|nuORF;ENST00000481546.1_1_21:46191294-46193735:-|nuORF;ENST00000491513.5_1_21:46191294-46199096:-|nuORF;nc|ENSG00000184787|P60604-2|UBE2G2;ENST00000497630.5_1_21:46191294-46221727:-|nuORF;ENSG00000184787|ENST00000345496|UBE2G2	ENST00000477954.5_1_21:46191294-46194726:-|nuORF	ENST00000477954.5_1_21:46191294-46194726:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3507690429688	2	528.350409	1054.68626	1.6292	0.00086079	-0.86143	-0.00045514	0.76778	0.00040566	528.3499088306575	16.325	0.16713	16.325	16.234	16.401	0					7	3	3	0	0	0	0.00012896	1	4493	4493		191.63	43.583	1	512730			20489	7036	12994	13051	20799	20799					0.1611087453638902
KIAPLHAG	8	Unmodified	_KIAPLHAG_					0	0	0			REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.7476806640625	2	403.747788	805.481023	0.58695	0.00023698	-0.81847	-0.00033046	-0.23152	-9.3477E-05	403.74746390731116	27.806	0.51635	27.806	27.695	28.211	0					15	10	3	0	0	0	0.61433	1	10008	10008		46.766	0	1	847950	+		20490	20555	12995	13052	20800	20800					0.07050140796798132
KIASCSVARE	10	Unmodified	_KIASCSVARE_					0	0	0			REV__ENST00000405486.5_2_22:41642303-41642387:-|nuORF	REV__ENST00000405486.5_2_22:41642303-41642387:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2817993164062	2	532.281866	1062.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.042	1	23.042	22.542	23.542	0								0	0	0	0.1345	1	7754	7754		72.879	8.672	1		+		20491	18969	12996	13053	20801	20801					0.02040597594486826
KIDLPIFN	8	Unmodified	_KIDLPIFN_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2832336425781	2	480.28166	958.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.444	1	43.444	42.944	43.944	0								0	0	0	1.7419	1	16386	16386		40.778	3.6191	1		+		20492	14323	12997	13054	20802	20802					0.0678354593695758
KIDQKTPL	8	Unmodified	_KIDQKTPL_					0	0	0		ENSG00000162927|ENST00000316752|PUS10	ENSG00000162927|ENST00000316752|PUS10	ENSG00000162927|ENST00000316752|PUS10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7845458984375	2	471.784567	941.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.864	1	33.864	33.364	34.364	0								0	0	0	1.7419	1	11931	11931		49.536	1.8787	1				20493	5513	12998	13055	20803	20803					0.08146644448629559
KIEAQMKLKQQ	11	Unmodified	_KIEAQMKLKQQ_					0	0	0			REV__ENST00000475911.2_1_1:159846344-159850487:-|nuORF	REV__ENST00000475911.2_1_1:159846344-159850487:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.9275207519531	3	448.927112	1343.75951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.172	1	18.172	17.672	18.672	0								0	0	0	0.29975	1	5266	5266		52.167	3.5656	1		+		20494	17555	12999	13056	20804	20804					0.10137635196679184
KIEDKIEKL	9	Unmodified	_KIEDKIEKL_					0	0	0		tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.33837890625	2	558.337164	1114.65977	0.12058	6.7325E-05	1.9464	0.0010868	2.067	0.0011541	558.3381367825505	18.168	0.21265	18.168	18.026	18.239	0					16	7	3	0	0	0	0.12834	1	4691	4691		66.429	0	1	143090			20495	22977	13000	13057	20805	20805					0.10703140854388948
KIEIFNND	8	Unmodified	_KIEIFNND_					0	0	0			REV__tr|U7STN0|U7STN0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01547PE=4SV=1	REV__tr|U7STN0|U7STN0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01547PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.756591796875	2	496.756007	991.497461	0.76	0.00037754	0.33949	0.00016864	1.0995	0.00054618	496.7567251046395	37.495	0.2692	37.495	37.36	37.629	0					13	8	2	0	0	0	0.36488	1	14679	14679		75.043	13.352	1	147160	+		20496	21930	13001	13058	20806	20806					0.0013717717223471482
KIELELQKE	9	Unmodified	_KIELELQKE_					0	0	0			REV__ENSG00000083937|ENST00000263780|CHMP2B	REV__ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.3308715820312	2	565.326796	1128.63904	0.31132	0.000176	-0.031458	-1.7784E-05	0.27986	0.00015821	565.3270277237488	26.532	0.48645	26.532	26.44	26.927	0					38	11	5	0	0	0	0.026538	1	9276	9276		112.41	5.4034	1	7591200	+		20497	13341	13002	13059	20807	20807					0.07986550474697651
KIELSSSH	8	Unmodified	_KIELSSSH_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2745361328125	2	450.742899	899.471246	0.64313	0.00028989	-1.3349	-0.00060169	-0.69176	-0.00031181	450.74238518758307	18.437	0.57521	18.437	18.037	18.612	0					29	13	3	0	0	0	0.34985	1	5298	5298		76.847	8.0598	1	534610	+		20498	21074	13003	13060	20808	20808					0.017489080007635494
KIELSYNKI	9	Unmodified	_KIELSYNKI_					0	0	0		ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.88494873046875	3	369.88513	1106.63356	-1.0196	-0.00037713	0.53208	0.00019681	-0.48751	-0.00018032	369.88536071205806	23.068	0.86182	23.068	22.971	23.833	0					75	29	6	0	0	0	0.063171	1	6856	6856		90.601	13.283	1	23977000			20499	7933	13004	13061	20809	20809					0.08450871682885008
KIEMIITPKY	10	Oxidation (M)	_KIEM(Oxidation (M))IITPKY_		KIEM(1)IITPKY		KIEM(64)IITPKY	0	0	1			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	626.35693359375	2	626.354499	1250.69445	3.1819	0.001993	0.4524	0.00028336	3.6343	0.0022764	626.3548289447804	22.614	0.2665	22.614	22.505	22.772	0					15	5	4	0	0	0	0.32758	1	7558	7558		64.207	16.55	1	2254500	+		20500	21809	13005	13062	20810	20810		792			0.07912640670815563
KIETENEE	8	Unmodified	_KIETENEE_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2330017089844	2	496.232561	990.45057	0.7358	0.00036513	0.12578	6.2416E-05	0.86158	0.00042754	496.23261825104356	15.036	0.11915	15.036	14.977	15.096	0					4	2	2	0	0	0	0.64144	1	4046	4046		42.396	3.1433	1	613020	+		20501	12221	13006	13063	20811	20811					-0.04503727169560534
KIEVETRSL	9	Unmodified	_KIEVETRSL_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.8131103515625	2	537.811313	1073.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.089	1	27.089	26.589	27.589	0								0	0	0	0.19847	1	8310	8310		51.193	1.6567	1				20502	1579	13007	13064	20812	20812					0.07421397160464949
KIFEDQLKQ	9	Unmodified	_KIFEDQLKQ_					0	0	0		ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.82470703125	2	574.819138	1147.62372	3.3301	0.0019142	4.4542	0.0025604	7.7843	0.0044746	574.8207532219913	33.223	0.51221	33.223	33.121	33.633	0					18	10	4	0	0	0	0.17854	1	12619	12619		64.207	0.67341	1	1015900			20503	7666	13008	13065	20813	20813					0.05581683677496585
KIFERVDF	8	Unmodified	_KIFERVDF_					0	0	0			REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2907104492188	2	527.290017	1052.56548	1.7398	0.00091739	-0.23716	-0.00012505	1.5026	0.00079233	527.2898993874974	37.305	0.34753	37.305	37.215	37.563	0					40	17	4	0	0	0	0.67394	1	13337	13337		37.159	5.2042	1	522080	+		20504	21984	13009	13066	20814	20814					0.04130046822888289
KIFIDKIY	8	Unmodified	_KIFIDKIY_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586;KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3108520507812	2	520.312961	1038.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.195	1	37.195	36.695	37.695	0								0	0	0	1.7419	1	14084	14084		27.882	0	1				20505	6064	13010	13067	20815	20815					0.09360692005134297
KIFIESRP	8	Unmodified	_KIFIESRP_					0	0	0			REV__ENST00000475582.5_1_2:27590663-27590978:-|nuORF	REV__ENST00000475582.5_1_2:27590663-27590978:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.292236328125	2	495.292559	988.570566	-0.40282	-0.00019951	-0.40046	-0.00019835	-0.80328	-0.00039786	495.29245042543704	19.655	0.10562	19.655	19.6	19.706	0					6	2	3	0	0	0	0.58597	1	5983	5983		51.335	1.3109	1	544440	+		20506	19528	13011	13068	20816	20816					0.07582350685515848
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.8134765625	2	512.813128	1023.6117	1.2232	0.00062726	-0.93819	-0.00048111	0.285	0.00014615	512.8126263688999	33.714	0.40016	33.714	33.62	34.02	0					35	16	3	0	0	0	0.46194	1	10962	10962		36.447	4.4919	1	383010			20507	4718	13012	13069	20817	20817					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.8131713867188	2	512.813128	1023.6117	-0.28056	-0.00014387	0.36662	0.00018801	0.086059	4.4132E-05	512.813240515483	33.78	0.42518	33.78	33.673	34.098	0					36	16	3	0	0	0	0.022525	1	11349	11349		117.81	51.382	1	457490			20508	4718	13012	13069	20818	20818					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.813232421875	2	512.813128	1023.6117	1.2774	0.00065509	-0.77377	-0.0003968	0.50368	0.00025829	512.8126883080535	33.956	0.86953	33.956	33.829	34.699	0					57	21	4	0	0	0	0.035106	1	13052	13052		104.01	37.584	1	3357700			20509	4718	13012	13069	20819	20819					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.8134155273438	2	512.813128	1023.6117	0.94157	0.00048285	0.01832	9.395E-06	0.95989	0.00049224	512.8129027743671	33.728	0.33105	33.728	33.651	33.982	0					18	9	3	0	0	0	0.076532	1	11862	11862		85.862	37.946	1	191650			20510	4718	13012	13069	20820	20820					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.8131103515625	2	512.813128	1023.6117	0.49958	0.00025619	-0.41766	-0.00021418	0.081921	4.201E-05	512.8129336214973	33.744	0.59727	33.744	33.638	34.235	0					36	17	4	0	0	0	0.029571	1	11869	11869		109.44	47.331	1	571850			20511	4718	13012	13069	20821	20821					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.813232421875	2	512.813128	1023.6117	0.074087	3.7993E-05	0.4546	0.00023312	0.52868	0.00027112	512.813322190121	33.915	1.2662	33.915	33.782	35.048	0					48	26	3	0	0	0	0.012936	1	12928	12928		134.77	70.558	1	5307300			20512	4718	13012	13069	20822	20822					0.10084111724995637
KIFSGYLLV	9	Unmodified	_KIFSGYLLV_					0	0	0		ENST00000380752.9_1_13:30084114-30084255:-|nuORF	ENST00000380752.9_1_13:30084114-30084255:-|nuORF	ENST00000380752.9_1_13:30084114-30084255:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.3115844726562	2	520.312961	1038.61137	0.65208	0.00033929	-3.7774	-0.0019654	-3.1254	-0.0016262	520.3113664668516	36.425	0.071209	36.425	36.375	36.446	0					5	3	2	0	0	0	0.48389	1	11949	11949		34.173	2.2177	1	60952			20513	9102	13013	13070	20823	20823					0.09360692005134297
KIFYNSGPK	9	Unmodified	_KIFYNSGPK_					0	0	0		nc|ENSG00000083544|Q9H7E2-2|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;ENSG00000083544|ENST00000377881|TDRD3;ENST00000471710.2_1_13:61103135-61109406:+|nuORF	nc|ENSG00000083544|Q9H7E2-2|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2910766601562	2	527.290017	1052.56548	1.2793	0.00067458	-0.18683	-9.8511E-05	1.0925	0.00057607	527.2898219168637	37.271	0.3232	37.271	37.162	37.485	0					48	17	4	0	0	0	0.41113	1	12190	12190		40.778	3.6191	1	935620			20514	1697	13014	13071	20824	20824					0.04130046822888289
KIFYNSGPK	9	Unmodified	_KIFYNSGPK_					0	0	0		nc|ENSG00000083544|Q9H7E2-2|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;ENSG00000083544|ENST00000377881|TDRD3;ENST00000471710.2_1_13:61103135-61109406:+|nuORF	nc|ENSG00000083544|Q9H7E2-2|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2903442382812	2	527.290017	1052.56548	0.93954	0.00049541	-0.090454	-4.7696E-05	0.84909	0.00044771	527.2898603900416	37.502	0.44061	37.502	37.392	37.833	0					38	13	5	0	0	0	0.047412	1	14667	14667		96.19	2.184	1	2960300			20515	1697	13014	13071	20825	20825					0.04130046822888289
KIFYNSGPK	9	Unmodified	_KIFYNSGPK_					0	0	0		nc|ENSG00000083544|Q9H7E2-2|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;ENSG00000083544|ENST00000377881|TDRD3;ENST00000471710.2_1_13:61103135-61109406:+|nuORF	nc|ENSG00000083544|Q9H7E2-2|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2904663085938	2	527.290017	1052.56548	1.6286	0.00085874	-0.5554	-0.00029286	1.0732	0.00056588	527.2896292428541	37.459	0.59498	37.459	37.349	37.944	0					37	12	4	0	0	0	0.087861	1	14633	14633		82.241	2.3013	1	8769100			20516	1697	13014	13071	20826	20826					0.04130046822888289
KIGGRGAVI	9	Unmodified	_KIGGRGAVI_					0	0	0		tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.77874755859375	2	435.779619	869.544686	0.072606	3.164E-05	-0.81108	-0.00035345	-0.73848	-0.00032181	435.77917928961597	26.002	0.14106	26.002	25.929	26.07	0					5	3	2	0	0	0	0.30268	1	8934	8934		50.025	5.4935	1	35824			20517	22708	13015	13072	20827	20827					0.10469501233899337
KIGKKSFQ	8	Unmodified	_KIGKKSFQ_					0	0	0		tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.28717041015625	2	468.287277	934.560001	-1.0402	-0.00048712	1.7768	0.00083207	0.73662	0.00034495	468.2879761314123	14.371	0.091652	14.371	14.315	14.407	0					7	4	2	0	0	0	0.43813	1	3107	3107		66.429	3.123	1	121210			20518	22943	13016	13073	20828	20828					0.09010368031090366
KIGNQLISV	9	Unmodified	_KIGNQLISV_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.5343933105469	3	324.53432	970.581131	0.53413	0.00017334	-0.37089	-0.00012037	0.16323	5.2975E-05	324.53422089644636	21.775	0.18251	21.775	21.641	21.823	0					11	4	4	0	0	0	0.51817	1	6982	6982		23.523	0.94304	1	555320	+		20519	15683	13017	13074	20829	20829					0.09466333339946686
KIGRDKLTT	9	Unmodified	_KIGRDKLTT_					0	0	0			REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.3139038085938	2	516.314023	1030.61349	0.98462	0.00050837	-0.38614	-0.00019937	0.59847	0.000309	516.3136472207588	55.302	0.35022	55.302	55.195	55.545	0					44	21	3	0	0	0	0.60058	1	16127	16127		14.865	0	1	260830	+		20520	22177	13018	13075	20830	20830					0.09941120742928433
KIGRLSAF	8	Unmodified	_KIGRLSAF_					0	0	0			REV__KIAA0195|p.S196P|1|0.05|ENSG00000177728|chr17:75488108-75488108|T/C|missense_variant	REV__KIAA0195|p.S196P|1|0.05|ENSG00000177728|chr17:75488108-75488108|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.27423095703125	2	446.27417	890.533787	-0.40956	-0.00018277	-0.11155	-4.9781E-05	-0.5211	-0.00023256	446.2742764502261	33.657	0.12932	33.657	33.568	33.698	0					7	3	3	0	0	0	0.75243	1	12475	12475		26.796	2.5934	1	225850	+		20521	16710	13019	13076	20831	20831					0.08414098859600472
KIGVSGPLIT	10	Unmodified	_KIGVSGPLIT_					0	0	0			REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.8075256347656	2	492.808042	983.601532	-0.74233	-0.00036582	0.39843	0.00019635	-0.34389	-0.00016947	492.8081791511273	30.338	0.34169	30.338	30.205	30.546	0					17	7	3	0	0	0	0.43008	1	11319	11319		52.937	6.9645	1	230400	+		20522	15108	13020	13077	20832	20832					0.10907503999760593
KIHEIPFI	8	Unmodified	_KIHEIPFI_					0	0	0			REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7961730957031	2	498.797478	995.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.194	1	25.194	24.694	25.694	0								0	0	0	1.7419	1	7806	7806		28.254	0	1		+		20523	22224	13021	13078	20833	20833					0.08243538690885543
KIIAPPERK	9	Unmodified	_KIIAPPERK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ACTA1|p.S340P|1|0.27|ENSG00000143632|chr1:229431615-229431615|A/G|missense_variant;ACTG1|p.Y337C|1|0.38|ENSG00000184009|chr17:81510808-81510808|T/C|missense_variant;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.3352661132812	2	526.334759	1050.65496	-1.2249	-0.00064469	1.5726	0.00082769	0.34769	0.000183	526.3357511736175	17.859	0.1389	17.859	17.768	17.907	0					5	3	2	0	0	0	0.35096	1	4553	4553		38.754	12.061	1	59969			20524	1545;6995;2493	13022	13079	20834	20834					0.13166301502246824
KIIDTAGLS	9	Unmodified	_KIIDTAGLS_					0	0	0		TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant;ENSG00000119401|ENST00000450136|TRIM32	TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant	TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2688293457031	2	459.26875	916.522947	-0.42206	-0.00019384	0.60922	0.00027979	0.18715	8.5952E-05	459.26883056048723	32.857	0.16503	32.857	32.773	32.938	0					10	6	2	0	0	0	0.53083	1	10647	10647		29.15	0	1	69390			20525	3110	13023	13080	20835	20835					0.06134651694674176
KIIEEKTL	8	Unmodified	_KIIEEKTL_					0	0	0			REV__COL28A1|p.V898Wfs*18|1|0.41|ENSG00000215018|chr7:7373215-7373215|T/-|frameshift_variant	REV__COL28A1|p.V898Wfs*18|1|0.41|ENSG00000215018|chr7:7373215-7373215|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.29986572265625	2	487.30005	972.585547	-1.2442	-0.00060632	1.2087	0.00058901	-0.035535	-1.7316E-05	487.30046938336216	27.498	0.17899	27.498	27.412	27.591	0					10	6	2	0	0	0	0.53424	1	8764	8764		56.721	0	1	111880	+		20526	12557	13024	13081	20836	20836					0.09815797762848888
KIIETRKI	8	Unmodified	_KIIETRKI_					0	0	0			REV__tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1	REV__tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.8291320800781	2	500.829309	999.644065	-1.0732	-0.00053748	1.3308	0.00066649	0.25759	0.00012901	500.8296855830787	27.45	0.093685	27.45	27.402	27.495	0					5	3	2	0	0	0	0.59773	1	8747	8747		38.806	0	1	44847	+		20527	21692	13025	13082	20837	20837					0.1442289912798742
KIIEVHVEK	9	Unmodified	_KIIEVHVEK_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.8326416015625	2	547.832049	1093.64954	1.8506	0.0010138	-0.7364	-0.00040342	1.1142	0.00061042	547.8317002465143	22.298	0.18927	22.298	22.209	22.398	0					9	4	3	0	0	0	0.034688	1	7232	7232		104.42	20.777	1	597810			20528	4384	13026	13083	20838	20838					0.10646577919806077
KIIEVHVEK	9	Unmodified	_KIIEVHVEK_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	365.5569152832031	3	365.557125	1093.64954	-0.97649	-0.00035696	0.6525	0.00023853	-0.32399	-0.00011844	365.89163066895753	21.997	0.15858	21.997	21.949	22.108	0					13	5	3	0	0	0	0.27123	1	6407	6407		60.167	7.9998	1	108070			20529	4384	13026	13083	20839	20839					0.10646577919806077
KIIEVHVEK	9	Unmodified	_KIIEVHVEK_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8323974609375	2	547.832049	1093.64954	1.8091	0.0009911	-0.96702	-0.00052976	0.84212	0.00046134	547.8314861529833	22.162	0.11815	22.162	22.102	22.22	0					4	2	2	0	0	0	0.085309	1	7475	7475		82.831	19.404	1	630620			20530	4384	13026	13083	20840	20840					0.10646577919806077
KIIEVHVEK	9	Unmodified	_KIIEVHVEK_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.83251953125	2	547.832049	1093.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.062	1	22.062	21.562	22.562	0								0	0	0	0.066158	1	6507	6507		81.525	19.834	1				20531	4384	13026	13083	20841	20841					0.10646577919806077
KIIGGKFGTS	10	Unmodified	_KIIGGKFGTS_					0	0	0		nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2978210449219	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.752	1	24.752	24.252	25.252	0								0	0	0	0.3639	1	7353	7353		40.778	1.972	1				20532	2249	13027	13084	20842	20842					0.07810333339955378
KIIQVGNR	8	Unmodified	_KIIQVGNR_					0	0	0		ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.28997802734375	2	464.290351	926.566149	-2.36	-0.0010957	1.7819	0.0008273	-0.57812	-0.00026841	464.2910772859671	22.54	0.15138	22.54	22.454	22.605	0					7	3	3	0	0	0	0.7126	1	6750	6750		31.955	2.8053	1	149960			20533	8059	13028	13085	20843	20843					0.0999288626261432
KIKDSAKK	8	Unmodified	_KIKDSAKK_					0	0	0			REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.29229736328125	2	459.292559	916.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.174	1	12.174	11.674	12.674	0								0	0	0	1.7419	1	2507	2507		35.618	3.6634	1		+		20534	22060	13029	13086	20844	20844					0.10894350685509835
KIKDVTEY	8	Unmodified	_KIKDVTEY_					0	0	0			REV__tr|U7SJV6|U7SJV6_FUSNUShikimatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroKPE=3SV=1	REV__tr|U7SJV6|U7SJV6_FUSNUShikimatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroKPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.771728515625	2	498.274032	994.533512	0.69147	0.00034454	-1.366	-0.00068065	-0.67454	-0.00033611	498.2734757858269	35.944	0.42883	35.944	35.829	36.257	0					20	11	3	0	0	0	0.67394	1	13616	13616		37.159	0	1	741720	+		20535	21747	13030	13087	20845	20845					0.036026343490902946
KIKIDSTVF	9	Unmodified	_KIKIDSTVF_					0	0	0			REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.8137817382812	2	525.813325	1049.6121	0.098092	5.1578E-05	0.48306	0.000254	0.58115	0.00030558	525.8135268391437	35.108	0.20637	35.108	35.022	35.228	0					13	5	3	0	0	0	0.25716	1	13128	13128		30.504	0	1	137840	+		20536	12442	13031	13088	20846	20846					0.08927486654192762
KIKLATIEE	9	Unmodified	_KIKLATIEE_					0	0	0			REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8192138671875	2	522.818607	1043.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.641	1	40.641	40.141	41.141	0								0	0	0	0.34101	1	15497	15497		26.693	1.1189	1		+		20537	15171	13032	13089	20847	20847					0.10259469308630287
KIKRKKRVL	9	Unmodified	_KIKRKKRVL_					0	0	0			REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF	REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	584.9229125976562	2	584.921867	1167.82918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.431	1	20.431	19.931	20.931	0								0	0	0	0.40728	1	5467	5467		7.6903	3.705	1		+		20538	13089	13033	13090	20848	20848					0.2519792671826053
KILCMFSK	8	Unmodified	_KILCMFSK_					0	0	0		ENST00000557373.1_1_14:35344887-35344989:+|nuORF	ENST00000557373.1_1_14:35344887-35344989:+|nuORF	ENST00000557373.1_1_14:35344887-35344989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2686767578125	2	485.266642	968.51873	2.4835	0.0012051	0.4181	0.00020289	2.9016	0.001408	485.2670508376987	11.916	1.0442	11.916	11.778	12.822	0					52	29	2	0	0	0	0.65276	1	2541	2541		40.573	5.3719	1	12886000			20539	10673	13034	13091	20849	20849					0.0332114767575149
KILGNLQQ	8	Unmodified	_KILGNLQQ_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.27593994140625	2	457.276909	912.539266	-0.43489	-0.00019886	-0.813	-0.00037176	-1.2479	-0.00057063	457.27670984982177	13.923	0.11483	13.923	13.863	13.978	0					4	2	2	0	0	0	0.60719	1	3361	3361		47.916	0	1	40535			20540	1153	13035	13092	20850	20850					0.07949777651424483
KILGQCVPIK	10	Unmodified	_KILGQCVPIK_					0	0	0			REV__tr|U7SYI2|U7SYI2_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00889PE=4SV=1	REV__tr|U7SYI2|U7SYI2_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00889PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.8402709960938	2	549.83882	1097.66309	1.2716	0.00069916	2.8081	0.001544	4.0797	0.0022432	549.8403881035374	16.957	0.063242	16.957	16.923	16.986	0					4	2	2	0	0	0	0.70877	1	3960	3960		20.947	0	1	33671	+		20541	22027	13036	13093	20851	20851					0.11816112427368353
KILNGAGEP	9	Unmodified	_KILNGAGEP_					0	0	0		nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.7528381347656	2	449.753267	897.491981	-0.39833	-0.00017915	-0.33798	-0.00015201	-0.73632	-0.00033116	449.7530130893033	19.85	0.16969	19.85	19.741	19.91	0					5	3	2	0	0	0	0.13519	1	6221	6221		71.296	11.177	1	232420			20542	5197	13037	13094	20852	20852					0.03913498380427427
KILRDWMYK	9	Unmodified	_KILRDWMYK_					0	0	0		ENSG00000176679|ENST00000321217|TGIF2LY;ENSG00000153779|ENST00000283891|TGIF2LX	ENSG00000176679|ENST00000321217|TGIF2LY	ENSG00000176679|ENST00000321217|TGIF2LY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	626.84765625	2	626.847176	1251.6798	0.79101	0.00049584	0.85295	0.00053467	1.644	0.0010305	626.8477995621413	26.953	0.099966	26.953	26.89	26.99	0					8	3	3	0	0	0	0.55379	1	8529	8529		26.693	2.1737	1	100490			20543	5059	13038	13095	20853	20853					0.06402613313321126
KILRDWMYK	9	Unmodified	_KILRDWMYK_					0	0	0		ENSG00000176679|ENST00000321217|TGIF2LY;ENSG00000153779|ENST00000283891|TGIF2LX	ENSG00000176679|ENST00000321217|TGIF2LY	ENSG00000176679|ENST00000321217|TGIF2LY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	626.8483276367188	2	626.847176	1251.6798	3.1731	0.001989	-1.2471	-0.00078175	1.926	0.0012073	626.8463496553047	27.128	0.2702	27.128	27.019	27.289	0					14	5	4	0	0	0	0.1115	1	9685	9685		76.774	13.24	1	1896400			20544	5059	13038	13095	20854	20854					0.06402613313321126
KILRNNLG	8	Unmodified	_KILRNNLG_					0	0	0			REV__ENST00000485407.1_1_13:39616195-39618420:+|nuORF	REV__ENST00000485407.1_1_13:39616195-39618420:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2900695800781	2	464.290351	926.566149	-0.69443	-0.00032242	0.17562	8.1537E-05	-0.51881	-0.00024088	464.29048474014365	22.763	0.1706	22.763	22.676	22.846	0					10	4	3	0	0	0	0.25485	1	7451	7451		97.473	0	1	557750	+		20545	17194	13039	13096	20855	20855					0.0999288626261432
KILSRVYE	8	Unmodified	_KILSRVYE_					0	0	0		ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2974853515625	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.788	1	49.788	49.288	50.288	0								0	0	0	1.7419	1	18724	18724		53.351	7.3995	1				20546	7918	13040	13097	20856	20856					0.07810333339944009
KILSVLMN	8	Unmodified	_KILSVLMN_					0	0	0			REV__ENST00000338051.4_1_5:134192491-134192722:+|nuORF	REV__ENST00000338051.4_1_5:134192491-134192722:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2793884277344	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.2	1	55.2	54.7	55.7	0								0	0	0	1.7419	1	19161	19161		26.693	4.733	1		+		20547	18423	13041	13098	20857	20857					0.07996490064874706
KILYNDLLS	9	Unmodified	_KILYNDLLS_					0	0	0			REV__ENSG00000170027|ENST00000307630|YWHAG	REV__ENSG00000170027|ENST00000307630|YWHAG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.2082824707031	3	360.209613	1077.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.462	1	12.462	11.962	12.962	0								0	0	0	0.37517	1	2810	2810		18.262	3.5684	1		+		20548	16347	13042	13099	20858	20858					0.0713118279156788
KIMEQFDE	8	Unmodified	_KIMEQFDE_					0	0	0			REV__ENST00000496637.6_1_10:28342996-28348461:-|nuORF	REV__ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2415771484375	2	520.241875	1038.4692	0.06745	3.509E-05	-0.57242	-0.0002978	-0.50497	-0.00026271	520.2416273556705	13.224	0.31424	13.224	13.142	13.456	0					19	8	3	0	0	0	0.5676	1	2948	2948		53.351	7.3995	1	6948200	+		20549	15438	13044	13100	20859	20859					-0.048498887993673634
KIMKDILEK	9	Unmodified	_KIMKDILEK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.33642578125	2	559.33611	1116.65767	0.51533	0.00028824	0.048321	2.7027E-05	0.56365	0.00031527	559.3361533302781	24.719	0.33912	24.719	24.602	24.941	0					15	8	3	0	0	0	0.13109	1	8377	8377		72.243	1.427	1	326110			20550	1647	13045	13101	20860	20860					0.10400388844914232
KIMKDILEK	9	Unmodified	_KIMKDILEK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2262268066406	3	373.226499	1116.65767	0.2496	9.3158E-05	-0.86123	-0.00032143	-0.61163	-0.00022828	373.2262672670022	24.668	0.56085	24.668	24.561	25.122	0					26	11	4	0	0	0	0.047855	1	8653	8653		122.94	34.762	1	1594800			20551	1647	13045	13101	20861	20861					0.10400388844914232
KIMKDILEK	9	Unmodified	_KIMKDILEK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3365478515625	2	559.33611	1116.65767	1.775	0.0009928	-1.2959	-0.00072482	0.4791	0.00026798	559.3355044942003	24.682	0.51078	24.682	24.545	25.056	0					23	10	4	0	0	0	5.2046E-05	1	8665	8665		195.57	46.586	1	799720			20552	1647	13045	13101	20862	20862					0.10400388844914232
KIMKDILEK	9	Unmodified	_KIMKDILEK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2264709472656	3	373.226499	1116.65767	-0.32214	-0.00012023	0.30655	0.00011441	-0.015593	-5.8199E-06	373.22661281721344	24.636	0.64878	24.636	24.53	25.179	0					28	13	4	0	0	0	0.078509	1	8510	8510		101.46	19.935	1	1534800			20553	1647	13045	13101	20863	20863					0.10400388844914232
KIMKDILEK	9	Unmodified	_KIMKDILEK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3363037109375	2	559.33611	1116.65767	1.8264	0.0010216	-1.5206	-0.00085051	0.30587	0.00017108	559.3352829724569	24.619	0.35594	24.619	24.513	24.869	0					18	7	3	0	0	0	0.013298	1	8526	8526		133.99	35.411	1	893050			20554	1647	13045	13101	20864	20864					0.10400388844914232
KIMKDILEKK	10	Unmodified	_KIMKDILEKK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.9251403808594	3	415.92482	1244.75263	0.50361	0.00020946	-0.72309	-0.00030075	-0.21948	-9.1286E-05	415.92453309508795	22.113	0.46201	22.113	22.001	22.463	0					19	10	2	0	0	0	0.029825	2	7113	7113;7287		118.23	31.352	1	262650			20555	1647	13046	13102	20865;20866	20865					0.14004322316077378
KIMKDILEKK	10	Unmodified	_KIMKDILEKK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.9243469238281	3	415.92482	1244.75263	0.066238	2.755E-05	-1.0392	-0.00043225	-0.97301	-0.0004047	415.9244813521677	21.971	0.60886	21.971	21.825	22.434	0					35	12	4	0	0	0	0.20322	1	7382	7382		79.07	5.2289	1	781580			20556	1647	13046	13102	20867	20867					0.14004322316077378
KIMKDILEKK	10	Unmodified	_KIMKDILEKK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.92425537109375	3	415.92482	1244.75263	-0.34514	-0.00014355	-0.81965	-0.00034091	-1.1648	-0.00048446	415.9244886296016	21.945	0.81474	21.945	21.84	22.655	0					42	16	4	0	0	0	0.35956	1	7239	7239		60.691	4.0584	1	1765600			20557	1647	13046	13102	20868	20868					0.14004322316077378
KIMQMFEL	8	Unmodified	_KIMQMFEL_					0	0	0			REV__MTBP|p.V306M|1|0.08|ENSG00000172167|chr8:120461194-120461194|G/A|missense_variant	REV__MTBP|p.V306M|1|0.08|ENSG00000172167|chr8:120461194-120461194|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2694091796875	2	520.269381	1038.52421	0.65575	0.00034117	-1.0436	-0.00054296	-0.38786	-0.00020179	520.2687714585218	40.05	0.28679	40.05	39.975	40.262	0					35	16	3	0	0	0	0.67394	1	12959	12959		37.159	8.9048	1	323560	+		20558	20899	13047	13103	20869	20869					0.006488264675454047
KIMSSPLSK	9	Unmodified	_KIMSSPLSK_					0	0	0		ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.78619384765625	2	495.786253	989.557952	0.73394	0.00036388	-0.75737	-0.00037549	-0.023431	-1.1617E-05	495.7858087310109	23.653	0.25983	23.653	23.444	23.704	0					16	6	3	0	0	0	0.026848	1	7852	7852		112.11	21.737	1	838900			20559	1176	13048	13104	20870	20870					0.06275571230980859
KIMSSPLSK	9	Unmodified	_KIMSSPLSK_					0	0	0		ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.78594970703125	2	495.786253	989.557952	-0.67038	-0.00033236	0.14353	7.116E-05	-0.52685	-0.0002612	495.78638462804196	23.593	0.31426	23.593	23.335	23.65	0					14	6	3	0	0	0	0.015992	1	8008	8008		128.6	4.5221	1	635340			20560	1176	13048	13104	20871	20871					0.06275571230980859
KINAYMQNK	9	Unmodified	_KINAYMQNK_					0	0	0			REV__tr|U7SXZ0|U7SXZ0_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00887PE=4SV=1	REV__tr|U7SXZ0|U7SXZ0_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00887PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.2929077148438	2	555.292233	1108.56991	0.53425	0.00029667	0.050844	2.8233E-05	0.5851	0.0003249	555.2924204538838	28.191	0.34354	28.191	28.055	28.399	0					17	7	3	0	0	0	0.30951	1	10291	10291		49.442	1.7842	1	482450	+		20561	22023	13049	13105	20872	20872					0.019971879741660814
KINKAIVSK	9	Unmodified	_KINKAIVSK_					0	0	0		SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant;ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2	SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant	SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.8293151855469	2	500.829309	999.644065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.316	1	16.316	15.816	16.816	0								0	0	0	0.034344	1	4638	4638		98.629	26.752	1				20562	4034	13050	13106	20873	20873					0.1442289912798742
KINKIDEKL	9	Unmodified	_KINKIDEKL_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8384399414062	2	550.837331	1099.66011	1.1517	0.00063438	0.61961	0.0003413	1.7713	0.00097568	550.8377494795036	37.685	0.20288	37.685	37.584	37.787	0					19	9	3	0	0	0	0.17854	1	13464	13464		64.207	4.089	1	220770	+		20563	21950	13051	13107	20874	20874					0.11426560574227551
KINLILSK	8	Unmodified	_KINLILSK_					0	0	0			REV__NPHS1|p.V437I|1|0.53|ENSG00000161270|chr19:35848259-35848259|C/T|missense_variant	REV__NPHS1|p.V437I|1|0.53|ENSG00000161270|chr19:35848259-35848259|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.8128662109375	2	464.813128	927.611703	-0.48805	-0.00022685	-0.02675	-1.2434E-05	-0.5148	-0.00023929	464.8131101364474	24.971	0.20753	24.971	24.869	25.076	0					9	4	3	0	0	0	0.26795	1	8698	8698		93.143	7.9824	1	552030	+		20564	21305	13052	13108	20875	20875					0.14500111724998987
KINSSAIKLQ	10	Unmodified	_KINSSAIKLQ_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.5574645996094	3	367.892396	1100.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.98	1	45.98	45.48	46.48	0								0	0	0	0.3998	1	18415	18415		30.569	0.25114	1				20565	3880	13053	13109	20876	20876					0.10905676431457323
KINYSFITL	9	Unmodified	_KINYSFITL_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|117|2|sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|117|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.8768615722656	3	366.877975	1097.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.232	1	21.232	20.732	21.732	0								0	0	0	0.27939	1	6716	6716		39.253	0	1		+		20566	20732	13054	13110	20877	20877					0.06719486654174034
KINYSFITL	9	Unmodified	_KINYSFITL_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|117|2|sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|117|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	366.8777770996094	3	366.877975	1097.6121	-0.98853	-0.00036267	0.67285	0.00024685	-0.31568	-0.00011582	366.878154678665	28.208	0.17516	28.208	28.15	28.325	0					10	6	2	0	0	0	0.30841	1	9066	9066		49.536	14.384	1	111670	+		20567	20732	13054	13110	20878	20878					0.06719486654174034
KIPGWTQW	8	Unmodified	_KIPGWTQW_					0	0	0			REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.27459716796875	2	508.271627	1014.5287	1.3151	0.00066844	2.7116	0.0013782	4.0268	0.0020467	508.27268965140337	23.576	0.46313	23.576	23.467	23.931	0					14	9	3	0	0	0	0.5676	1	8024	8024		53.351	7.3995	1	687910	+		20568	20886	13055	13111	20879	20879					0.02201794996983608
KIPRNPTY	8	Unmodified	_KIPRNPTY_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|39|2|sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|115|2|sense;L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|48|2|sense;L1PA3_dup1115|chr2:110017555-110020014:+|1.763195504976095|0.4680770941019235|1.91|454.0|42|2|sense;L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|19|1|sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|39|2|sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|39|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.5252990722656	3	330.190665	987.550165	0.5455	0.00018012	-0.50817	-0.00016779	0.037333	1.2327E-05	330.1903775589058	20.15	0.9199	20.15	19.894	20.813	0					29	18	2	0	0	0	0.73426	1	6527	6527		29.15	6.1071	1	149440			20569	11286	13056	13112	20880	20880					0.0558918002569726
KIQDLAKAPN	10	Unmodified	_KIQDLAKAPN_					0	0	0		ENST00000439895.1_1_2:39038138-39038510:-|nuORF	ENST00000439895.1_1_2:39038138-39038510:-|nuORF	ENST00000439895.1_1_2:39038138-39038510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.317138671875	2	549.319306	1096.62406	0.2436	0.00013382	-3.8787	-0.0021306	-3.6351	-0.0019968	549.3173708575553	19.551	0.31103	19.551	19.447	19.758	0					11	6	3	0	0	0	0.46128	1	6210	6210		49.536	0	1	555660			20570	9568	13057	13113	20881	20881					0.07961103397360603
KIQEEERKA	9	Unmodified	_KIQEEERKA_					0	0	0		ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;ITSN2|p.A1240Pfs*15|1|0.05|ENSG00000198399|chr2:24217995-24217996|-/AAGGG|frameshift_variant;ITSN2|p.F1478Qfs*12|1|0.3|ENSG00000198399|chr2:24209858-24209859|AA/-|frameshift_variant;ITSN2|p.A1583Pfs*86|1|0.25|ENSG00000198399|chr2:24205230-24205230|T/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.8115844726562	2	565.811845	1129.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.9	1	17.9	17.4	18.4	0								0	0	0	0.19847	1	4581	4581		51.193	3.2332	1				20571	7555	13058	13114	20882	20882					0.049516115293727125
KIQESTQPG	9	Unmodified	_KIQESTQPG_					0	0	0		PCDHB5|p.P143Q|1|0.17|ENSG00000113209|chr5:141135862-141135862|C/A|missense_variant	PCDHB5|p.P143Q|1|0.17|ENSG00000113209|chr5:141135862-141135862|C/A|missense_variant	PCDHB5|p.P143Q|1|0.17|ENSG00000113209|chr5:141135862-141135862|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2586975097656	2	494.258914	986.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.066	1	18.066	17.566	18.566	0								0	0	0	0.27025	1	5334	5334		40.778	1.972	1				20572	11908	13059	13115	20883	20883					0.009482756839020112
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.8071899414062	2	546.806031	1091.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.582	1	20.582	20.082	21.082	0								0	0	0	0.03526	1	5534	5534		93.143	13.431	1				20573	10292	13060	13116	20884	20884					0.05537414506011373
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.8062744140625	2	546.806031	1091.59751	1.8574	0.0010156	-0.89162	-0.00048754	0.9658	0.0005281	546.8055484206992	20.855	0.14308	20.855	20.799	20.942	0					8	3	3	0	0	0	1.4602E-05	1	6550	6550		204.42	97.417	1	606160			20574	10292	13060	13116	20885	20885					0.05537414506011373
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.806640625	2	546.806031	1091.59751	0.46136	0.00025227	0.91896	0.00050249	1.3803	0.00075476	546.806576232711	20.59	0.14202	20.59	20.525	20.667	0					10	4	3	0	0	0	0.040209	1	5768	5768		99.013	22.166	1	299280			20575	10292	13060	13116	20886	20886					0.05537414506011373
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.8062744140625	2	546.806031	1091.59751	1.1328	0.00061943	-0.21042	-0.00011506	0.92239	0.00050437	546.8058958373584	20.652	0.14928	20.652	20.558	20.708	0					5	3	2	0	0	0	0.037712	1	5858	5858		101.46	26.417	1	189620			20576	10292	13060	13116	20887	20887					0.05537414506011373
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.806640625	2	546.806031	1091.59751	-1.5025	-0.00082158	1.8658	0.0010202	0.36325	0.00019863	546.8072012983891	20.642	0.14257	20.642	20.549	20.692	0					7	3	3	0	0	0	0.012936	1	5852	5852		134.77	55.053	1	137550			20577	10292	13060	13116	20888	20888					0.05537414506011373
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.8069458007812	2	546.806031	1091.59751	1.9093	0.001044	-0.32101	-0.00017553	1.5883	0.00086847	546.8058499973613	20.785	0.21655	20.785	20.726	20.943	0					7	4	2	0	0	0	0.0015666	1	6668	6668		177.3	65.656	1	1468700			20578	10292	13060	13116	20889	20889					0.05537414506011373
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.80615234375	2	546.806031	1091.59751	3.807	0.0020817	-2.8143	-0.0015389	0.99268	0.0005428	546.8044384725114	20.819	0.21653	20.819	20.709	20.926	0					8	4	3	0	0	0	0.00022968	1	6664	6664		190.62	71.879	1	1072900			20579	10292	13060	13116	20890	20890					0.05537414506011373
KIQKTFLF	8	Unmodified	_KIQKTFLF_					0	0	0			REV__sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	REV__sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.8133544921875	2	512.813128	1023.6117	0.074087	3.7993E-05	0.4546	0.00023312	0.52868	0.00027112	512.813322190121	33.915	1.2662	33.915	33.782	35.048	0					48	26	3	0	0	0	0.65276	1	13121	13121		40.573	1.7665	1	5307300	+		20580	21562	13061	13117	20891	20891					0.100841117249729
KIQLYVPQ	8	Unmodified	_KIQLYVPQ_					0	0	0		TIAM1|p.M817I|1|0.38|ENSG00000156299|chr21:31202950-31202950|C/T|missense_variant	TIAM1|p.M817I|1|0.38|ENSG00000156299|chr21:31202950-31202950|C/T|missense_variant	TIAM1|p.M817I|1|0.38|ENSG00000156299|chr21:31202950-31202950|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.79290771484375	2	494.794935	987.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.036	1	16.036	15.536	16.536	0								0	0	0	1.7419	1	3715	3715		62.978	0	1				20581	22532	13062	13118	20892	20892					0.08103234828274708
KIQPRTWM	8	Unmodified	_KIQPRTWM_					0	0	0			REV__ENSG00000182827|ENST00000366812|ACBD3	REV__ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.293701171875	2	530.292037	1058.56952	2.3775	0.0012608	0.48469	0.00025703	2.8622	0.0015178	530.2922345017315	20.972	0.56332	20.972	20.799	21.362	0					21	13	2	0	0	0	0.34985	1	6587	6587		76.847	76.847	1	2200500	+		20582	16897	13063	13119	20893	20893					0.042578130449328455
KIQQLMKAS	9	Unmodified	_KIQQLMKAS_					0	0	0		nc|ENSG00000139436|Q14161-11|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.8060302734375	2	523.804977	1045.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.866	1	48.866	48.366	49.366	0								0	0	0	0.34598	1	16172	16172		25.574	2.5316	1				20583	11548	13064	13120	20894	20894					0.07442662496555386
KIQTQTPR	8	Unmodified	_KIQTQTPR_					0	0	0		ENSG00000165929|ENST00000435962|TC2N	ENSG00000165929|ENST00000435962|TC2N	ENSG00000165929|ENST00000435962|TC2N	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2851867675781	2	486.285266	970.555979	-0.29277	-0.00014237	0.13963	6.7902E-05	-0.15314	-7.4468E-05	486.28531465303297	15.565	0.33833	15.565	15.358	15.697	0					26	8	4	0	0	0	0.37144	1	4001	4001		74.255	2.9593	1	2857900			20584	5843	13065	13121	20895	20895					0.06952278537369239
KIQWLEKL	8	Unmodified	_KIQWLEKL_					0	0	0		TXLNA|p.R466W|1|0.08|ENSG00000084652|chr1:32194950-32194950|C/T|missense_variant	TXLNA|p.R466W|1|0.08|ENSG00000084652|chr1:32194950-32194950|C/T|missense_variant	TXLNA|p.R466W|1|0.08|ENSG00000084652|chr1:32194950-32194950|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3215942382812	2	529.32386	1056.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.428	1	22.428	21.928	22.928	0								0	0	0	1.7419	1	6341	6341		34.173	1.3601	1				20585	23081	13066	13122	20896	20896					0.10711496753697247
KIRAWQIA	8	Unmodified	_KIRAWQIA_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2996520996094	2	493.300719	984.586885	-2.5821	-0.0012738	-0.3802	-0.00018755	-2.9623	-0.0014613	493.30045045693436	36.736	0.1168	36.736	36.677	36.794	0					8	5	2	0	0	0	0.75243	1	13143	13143		26.796	0	1	39189			20586	5265	13067	13123	20897	20897					0.09397476642254787
KIRLKIRRLDD	11	Unmodified	_KIRLKIRRLDD_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000575207.5_1_17:560762-617949:-|nuORF;VPS53|p.I194Dfs*17|1|0.4|ENSG00000141252|chr17:653319-653320|-/C|frameshift_variant	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.9715270996094	3	475.971932	1424.89397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.639	1	42.639	42.139	43.139	0								0	0	0	0.45674	1	16726	16726		6.3209	0.31984	1				20587	4434	13068	13124	20898	20898					0.19851456733590567
KIRRGKKKQ	9	Unmodified	_KIRRGKKKQ_					0	0	0			REV__ATRX|p.R1425G|1|0.44|ENSG00000085224|chrX:77654142-77654142|T/C|missense_variant	REV__ATRX|p.R1425G|1|0.44|ENSG00000085224|chrX:77654142-77654142|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.2602844238281	3	381.259524	1140.75674	0.82761	0.00031553	1.2403	0.00047287	2.0679	0.0007884	381.2599323467379	18.437	0.19096	18.437	18.339	18.53	0					6	4	2	0	0	0	0.16002	1	5406	5406		66.429	9.7082	1	218580	+		20588	12260	13069	13125	20899	20899					0.1919959264469071
KISAALVPVAA	11	Unmodified	_KISAALVPVAA_					0	0	0		ENST00000554015.5_1_14:64971609-64988262:+|nuORF;ENST00000358738.3_1_14:64971354-64988209:+|nuORF;ENST00000555321.1_3_14:64971444-64983366:+|nuORF	ENST00000554015.5_1_14:64971609-64988262:+|nuORF	ENST00000554015.5_1_14:64971609-64988262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3294677734375	2	520.329142	1038.64373	0.33564	0.00017464	0.30021	0.00015621	0.63586	0.00033085	520.3290042667476	36.09	0.21859	36.09	36.03	36.249	0					6	4	2	0	0	0	0.56817	1	14007	14007		39.253	2.8061	1	76791			20589	8839	13070	13126	20900	20900					0.12595479408105348
KISSIPTRL	9	Unmodified	_KISSIPTRL_					0	0	0			REV__ENST00000392325.8_1_17:80573596-80573788:-|nuORF	REV__ENST00000392325.8_1_17:80573596-80573788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.8189697265625	2	507.818941	1013.62333	-0.61275	-0.00031117	0.38023	0.00019309	-0.23252	-0.00011808	507.8191669824304	14.673	0.062569	14.673	14.642	14.704	0					4	2	2	0	0	0	0.31937	1	3224	3224		41.427	0	1	109160	+		20590	18823	13071	13127	20901	20901					0.11706308748307492
KISTGMMMKE	10	2 Oxidation (M)	_KISTGM(Oxidation (M))MM(Oxidation (M))KE_		KISTGM(0.923)M(0.077)M(1)KE		KISTGM(11)M(-11)M(37)KE	0	0	2		USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.2796630859375	2	594.277077	1186.5396	3.1721	0.0018851	0.72857	0.00043297	3.9007	0.0023181	594.2776332226305	38.962	0.52273	38.962	38.81	39.332	0					30	11	4	0	0	0	0.20981	1	15352	15352		78.264	12.798	3	1679800			20591	1203	13072	13128	20902	20902		55;56			-0.04620674797547508
KISTSCSVIP	10	Unmodified	_KISTSCSVIP_					0	0	0		ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant;ANKRD12|p.K652Nfs*4|1|0.09|ENSG00000101745|chr18:9255217-9255217|A/-|frameshift_variant;ANKRD12|p.L711Kfs*5|1|0.41|ENSG00000101745|chr18:9255395-9255396|TT/-|frameshift_variant;ANKRD12|p.K983Nfs*4|1|0.36|ENSG00000101745|chr18:9256209-9256209|A/-|frameshift_variant;ANKRD12|p.S984Ifs*7|1|0.2|ENSG00000101745|chr18:9256208-9256209|-/A|frameshift_variant;ANKRD12|p.D1018Rfs*2|1|0.34|ENSG00000101745|chr18:9256313-9256314|-/A|frameshift_variant;ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant;ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant	ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7808227539062	2	517.781167	1033.54778	1.2303	0.00063702	-0.12189	-6.3114E-05	1.1084	0.00057391	517.7810578483725	28.489	0.16967	28.489	28.416	28.586	0					5	4	2	0	0	0	0.63224	1	9457	9457		30.318	2.4355	1	67012			20592	152	13073	13129	20903	20903					0.032349635057244086
KISVPPKQH	9	Unmodified	_KISVPPKQH_					0	0	0			REV__ZBTB25|p.E245Gfs*4|1|0.2|ENSG00000089775|chr14:64487497-64487498|-/C|frameshift_variant	REV__ZBTB25|p.E245Gfs*4|1|0.2|ENSG00000089775|chr14:64487497-64487498|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.3129272460938	2	517.311284	1032.60801	1.368	0.00070769	0.53296	0.00027571	1.901	0.00098339	517.3115384290288	15.133	0.29115	15.133	14.924	15.215	0					27	11	3	0	0	0	0.47038	1	3186	3186		35.618	0.41757	1	357480	+		20593	13414	13074	13130	20904	20904					0.09301441951151901
KISWQKSQ	8	Unmodified	_KISWQKSQ_					0	0	0		L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|93|2|sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|93|2|sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|93|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7822265625	2	502.779816	1003.54508	2.9279	0.0014721	0.41838	0.00021035	3.3463	0.0016824	502.7802423536063	14.082	0.35929	14.082	13.88	14.239	0					17	7	4	0	0	0	0.27565	1	3414	3414		90.601	8.3603	1	1553400			20594	11301	13075	13131	20905	20905					0.04344876163088429
KISYVISIK	9	Unmodified	_KISYVISIK_					0	0	0		SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant;nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1	SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant	SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.2247314453125	3	350.890104	1049.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.452	1	25.452	24.952	25.952	0								0	0	0	0.28666	1	8699	8699		37.508	1.8899	1				20595	2465	13076	13132	20906	20906					0.12564363550882263
KITDFLQTK	9	Unmodified	_KITDFLQTK_					0	0	0		ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.3167724609375	2	547.316232	1092.61791	0.74705	0.00040887	-0.13098	-7.1686E-05	0.61607	0.00033719	547.3163092632773	34.543	0.24685	34.543	34.424	34.67	0					9	6	2	0	0	0	0.025253	1	13332	13332		117.71	45.828	1	204850			20596	5676	13077	13133	20907	20907					0.07530585165818593
KITDVALEK	9	Unmodified	_KITDVALEK_					0	0	0		FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant;nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.80303955078125	2	508.802957	1015.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.393	1	25.393	24.893	25.893	0								0	0	0	0.11963	1	9006	9006		66.962	4.8545	1				20597	3080	13078	13134	20908	20908					0.08418896274520193
KITFCMGI	8	Carbamidomethyl (C)	_KITFC(Carbamidomethyl (C))MGI_	KITFC(1)MGI		KITFC(55)MGI		0	1	0		ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL	ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENST00000480546.1_1_10:95718567-95721153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.24761962890625	2	485.248449	968.482345	-0.25275	-0.00012265	-2.6443	-0.0012832	-2.8971	-0.0014058	485.2471114401912	27.867	0.17549	27.867	27.828	28.003	0					6	4	2	0	0	0	0.55361	1	9184	9184		54.765	10.234	1	66223			20598	9952	13079	13135	20909	20909	405				-0.0031572922094937894
KITLLHRTQ	9	Unmodified	_KITLLHRTQ_					0	0	0		MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	370.8984069824219	3	370.564502	1108.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.713	1	18.713	18.213	19.213	0								0	0	0	0.22075	1	4703	4703		47.96	4.3087	1				20599	11384	13080	13136	20910	20910					0.12168802388214317
KITLLHRTQ	9	Unmodified	_KITLLHRTQ_					0	0	0		MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.5645751953125	3	370.564502	1108.67168	0.77479	0.00028711	-0.98704	-0.00036576	-0.21225	-7.8654E-05	370.564096791076	19.006	0.2859	19.006	18.896	19.182	0					16	7	4	0	0	0	0.27123	1	5653	5653		53.089	1.5612	1	1210700			20600	11384	13080	13136	20911	20911					0.12168802388214317
KITNHPSNK	9	Unmodified	_KITNHPSNK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.78857421875	2	519.788173	1037.56179	0.99285	0.00051607	0.8962	0.00046584	1.889	0.00098191	519.7886332924869	12.848	0.059958	12.848	12.81	12.87	0					6	3	2	0	0	0	0.14578	1	2526	2526		62.107	0	1	71244			20601	1477	13081	13137	20912	20912					0.0445137704903118
KITNHPSNK	9	Unmodified	_KITNHPSNK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.78857421875	2	519.788173	1037.56179	1.6141	0.000839	-1.0087	-0.00052431	0.60542	0.00031469	519.7877477496061	13.054	0.24646	13.054	12.963	13.209	0					8	5	2	0	0	0	0.095583	1	2944	2944		64.207	20.09	1	901440			20602	1477	13081	13137	20913	20913					0.0445137704903118
KITQELSDLQQ	11	Unmodified	_KITQELSDLQQ_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant;CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant;CDK5RAP2|p.E454Kfs*11|2|0.31|ENSG00000136861|chr9:120491430-120491433|TCTT/-|frameshift_variant	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	651.8485107421875	2	651.848624	1301.6827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.346	1	31.346	30.846	31.846	0								0	0	0	0.068771	1	11811	11811		82.75	0	1				20603	4119	13082	13138	20914	20914					0.04392115181190093
KITSELSTA	9	Unmodified	_KITSELSTA_					0	0	0		ENST00000519358.5_1_8:71520990-71543348:+|nuORF;ENST00000499227.6_1_8:71520990-71564086:+|nuORF	ENST00000519358.5_1_8:71520990-71543348:+|nuORF	ENST00000519358.5_1_8:71520990-71543348:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2637023925781	2	475.263665	948.512776	3.6027	0.0017122	-4.0179	-0.0019096	-0.41524	-0.00019735	475.26216906997865	19.016	0.074192	19.016	18.97	19.045	0					4	2	2	0	0	0	0.5879	1	5081	5081		23.042	1.3402	1	35666			20604	10141	13083	13139	20915	20915					0.03646043969422408
KIVDRVNHP	9	Unmodified	_KIVDRVNHP_					0	0	0			REV__ENST00000481515.1_1_5:175723242-175749429:+|nuORF	REV__ENST00000481515.1_1_5:175723242-175749429:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3124389648438	2	539.311815	1076.60908	2.0692	0.0011159	-0.65073	-0.00035095	1.4185	0.000765	539.3113648073138	17.674	0.22062	17.674	17.563	17.784	0					9	4	3	0	0	0	0.40353	1	5157	5157		34.173	6.2903	1	450110	+		20605	16348	13084	13140	20916	20916					0.07383656320030241
KIVECIPN	8	Unmodified	_KIVECIPN_					0	0	0		tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2533264160156	2	458.252046	914.489538	0.78457	0.00035953	1.6345	0.00074903	2.4191	0.0011086	458.25285067956094	14.866	0.13651	14.866	14.777	14.913	0					5	3	2	0	0	0	0.35045	1	3728	3728		76.774	7.9873	1	398940			20606	22748	13085	13141	20917	20917					0.028873266511027396
KIVGPLANCE	10	Unmodified	_KIVGPLANCE_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7831420898438	2	522.281334	1042.54812	1.0553	0.00055119	-3.9962	-0.0020871	-2.9409	-0.001536	522.2765616468974	27.433	0.21766	27.433	27.321	27.539	0					12	4	4	0	0	0	0.65895	1	9974	9974		27.047	0.3544	1	656030	+		20607	16749	13086	13142	20918	20918					0.028543832255763846
KIVKGLFPA	9	Unmodified	_KIVKGLFPA_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.816650390625	2	486.81567	971.616788	-0.045925	-2.2357E-05	2.792	0.0013592	2.7461	0.0013368	486.81703794645847	31.806	0.12465	31.806	31.757	31.881	0					9	5	2	0	0	0	0.35045	1	10252	10252		45.952	7.1458	1	60804	+		20608	16732	13087	13143	20919	20919					0.12984415587607145
KIWNKSLVS	9	Unmodified	_KIWNKSLVS_					0	0	0		ENST00000439158.5_1_6:28295255-28297120:-|nuORF	ENST00000439158.5_1_6:28295255-28297120:-|nuORF	ENST00000439158.5_1_6:28295255-28297120:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.818115234375	2	537.818941	1073.62333	-0.31948	-0.00017182	-0.92862	-0.00049943	-1.2481	-0.00067125	537.8184191383008	16.22	0.090015	16.22	16.158	16.248	0					6	3	2	0	0	0	0.28897	1	3841	3841		35.618	2.8059	1	150770			20609	9556	13088	13144	20920	20920					0.08946308748318188
KIYDEKDF	8	Unmodified	_KIYDEKDF_					0	0	0		tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1	tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1	tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2642211914062	2	529.263665	1056.51278	1.7396	0.00092072	-1.5359	-0.00081289	0.20374	0.00010783	529.2630180276643	37.78	0.27901	37.78	37.685	37.964	0					14	9	2	0	0	0	0.6088	1	14786	14786		47.657	3.5405	1	330750			20610	22974	13089	13145	20921	20921					-0.013219560305742561
KIYDRQVTK	9	Unmodified	_KIYDRQVTK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.8328857421875	2	575.83258	1149.65061	1.5845	0.00091241	-0.26283	-0.00015135	1.3217	0.00076106	575.8324208497628	17.33	0.094862	17.33	17.262	17.357	0					6	2	3	0	0	0	0.049407	1	4870	4870		79.489	10.643	1	141720			20611	1722	13090	13146	20922	20922					0.08176792288713841
KIYGSKGGA	9	Unmodified	_KIYGSKGGA_					0	0	0			REV__ENST00000285013.10_2_17:33774297-33775769:-|nuORF	REV__ENST00000285013.10_2_17:33774297-33775769:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7478942871094	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.834	1	19.834	19.334	20.334	0								0	0	0	0.2591	1	5440	5440		42.396	1.8235	1		+		20612	18142	13091	13147	20923	20923					0.036855157259992666
KIYYVFER	8	Unmodified	_KIYYVFER_					0	0	0		FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1;FREM1|p.Q1320K|1|0.44|ENSG00000164946|chr9:14792766-14792766|G/T|missense_variant;ENST00000497634.2_1_9:14784366-14792866:-|nuORF	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3031616210938	2	559.305667	1116.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.463	1	16.463	15.963	16.963	0								0	0	0	1.7419	1	3954	3954		16.473	2.336	1				20613	5747	13092	13148	20924	20924					0.04314619856995705
KKAAEDKCKQ	10	Carbamidomethyl (C)	_KKAAEDKC(Carbamidomethyl (C))KQ_	KKAAEDKC(1)KQ		KKAAEDKC(62)KQ		0	1	0		nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	nc|ENSG00000167460|P67936-2|TPM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	603.31982421875	2	603.31898	1204.62341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.976	1	20.976	20.476	21.476	0								0	0	0	0.21707	1	5947	5947		62.107	9.1707	1				20614	11631	13093	13149	20925	20925	459				0.029279406859814117
KKAAKAGL	8	Unmodified	_KKAAKAGL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.76324462890625	2	393.763438	785.512323	-0.19452	-7.6594E-05	-0.24532	-9.66E-05	-0.43984	-0.00017319	393.7632649466655	23.523	0.17119	23.523	23.433	23.604	0					9	4	3	0	0	0	0.8006	1	7811	7811		20.482	0	1	312140			20615	950	13094	13150	20926	20926					0.11098713830892848
KKAAVAAK	8	Unmodified	_KKAAVAAK_					0	0	0			REV__ENSG00000278053|ENST00000617633|DDX52	REV__ENSG00000278053|ENST00000617633|DDX52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	393.76318359375	2	393.763438	785.512323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.191	1	23.191	22.691	23.691	0								0	0	0	1.7419	1	6672	6672		19.36	0	1		+		20616	17838	13095	13151	20927	20927					0.11098713830881479
KKAFKVTE	8	Unmodified	_KKAFKVTE_					0	0	0			REV__tr|U7SUS5|U7SUS5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00987PE=4SV=1	REV__tr|U7SUS5|U7SUS5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00987PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.787109375	2	475.78711	949.559667	-0.44428	-0.00021138	0.15264	7.2625E-05	-0.29164	-0.00013876	475.78717376375744	34.211	0.29082	34.211	34.121	34.412	0					12	7	3	0	0	0	0.60719	1	13174	13174		47.916	0	1	181870	+		20617	21980	13096	13152	20928	20928					0.08286948311240394
KKAGLAEML	9	Unmodified	_KKAGLAEML_					0	0	0			REV__nc|ENSG00000143839|P00797-2|REN	REV__nc|ENSG00000143839|P00797-2|REN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7804260253906	2	480.78097	959.547388	0.67952	0.0003267	-2.0588	-0.00098983	-1.3793	-0.00066314	480.78000389493695	38.87	0.25616	38.87	38.734	38.99	0					18	9	4	0	0	0	0.077948	1	15250	15250		85.359	11.385	1	237390	+		20618	15211	13097	13153	20929	20929					0.06599588576523274
KKAKGDVKK	9	Unmodified	_KKAKGDVKK_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000491313.5_1_10:99116853-99127090:-|nuORF;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.55364990234375	3	334.553715	1000.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.52	1	17.52	17.02	18.02	0								0	0	0	0.27521	1	5070	5070		40.058	7.3076	1				20619	1257	13098	13154	20930	20930					0.1390201498522856
KKAKYKPNI	9	Unmodified	_KKAKYKPNI_					0	0	0			REV__ENSG00000196353|ENST00000429747|CPNE4	REV__ENSG00000196353|ENST00000429747|CPNE4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3426513671875	2	545.342584	1088.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.699	1	27.699	27.199	28.199	0								0	0	0	0.28666	1	10065	10065		30.504	0	1		+		20620	17244	13099	13155	20931	20931					0.12982588019326613
KKALNLQK	8	Unmodified	_KKALNLQK_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.F1094Lfs*4|2|0.18|ENSG00000183495|chr12:132006849-132006849|T/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.8082275390625	2	471.808377	941.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.756	1	15.756	15.256	16.256	0								0	0	0	1.7419	1	4372	4372		55.504	0	1				20621	6963	13100	13156	20932	20932					0.12906343439465218
KKAMGQVAFH	10	Unmodified	_KKAMGQVAFH_					0	0	0		ENST00000500779.2_1_5:111005234-111063675:+|nuORF	ENST00000500779.2_1_5:111005234-111063675:+|nuORF	ENST00000500779.2_1_5:111005234-111063675:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8009033203125	2	558.802768	1115.59098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.932	1	14.932	14.432	15.432	0								0	0	0	0.29716	1	3827	3827		51.335	3.6781	1				20622	10146	13101	13157	20933	20933					0.037811980736705664
KKANPNNLQ	9	Unmodified	_KKANPNNLQ_					0	0	0		ENST00000354675.10_1_6:151670136-151670256:+|nuORF	ENST00000354675.10_1_6:151670136-151670256:+|nuORF	ENST00000354675.10_1_6:151670136-151670256:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.8612060546875	3	342.861207	1025.56179	0.5073	0.00017393	-0.91208	-0.00031272	-0.40477	-0.00013878	342.8608787260956	17.715	0.20861	17.715	17.647	17.855	0					13	5	4	0	0	0	0.42902	1	5064	5064		39.253	7.723	1	449520			20623	8788	13102	13158	20934	20934					0.05003377049024493
KKAPPPSSV	9	Unmodified	_KKAPPPSSV_					0	0	0		ENST00000508256.5_1_4:89205591-89205732:-|nuORF	ENST00000508256.5_1_4:89205591-89205732:-|nuORF	ENST00000508256.5_1_4:89205591-89205732:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.7710266113281	2	455.77146	909.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.244	1	28.244	27.744	28.744	0								0	0	0	0.3428	1	8801	8801		26.693	4.733	1				20624	10210	13103	13159	20935	20935					0.06998375277134983
KKARRISK	8	Unmodified	_KKARRISK_					0	0	0		PDIA3|p.Q502Rfs*46|1|0.48|ENSG00000167004|chr15:43771204-43771204|C/-|frameshift_variant	PDIA3|p.Q502Rfs*46|1|0.48|ENSG00000167004|chr15:43771204-43771204|C/-|frameshift_variant	PDIA3|p.Q502Rfs*46|1|0.48|ENSG00000167004|chr15:43771204-43771204|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.8338928222656	2	493.832717	985.650882	2.7853	0.0013755	-0.13728	-6.7796E-05	2.648	0.0013077	493.83269435480787	27.838	0.31332	27.838	27.729	28.042	0					14	6	4	0	0	0	0.59773	1	10048	10048		49.442	3.4896	1	1600600			20625	11918	13104	13160	20936	20936					0.1574825679922469
KKASTQINT	9	Unmodified	_KKASTQINT_					0	0	0			REV__ENSG00000100442|ENST00000396062|FKBP3	REV__ENSG00000100442|ENST00000396062|FKBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.78253173828125	2	495.782556	989.550559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.639	1	20.639	20.139	21.139	0								0	0	0	0.1633	1	5841	5841		56.721	7.185	1		+		20626	13556	13105	13161	20937	20937					0.055365549549037496
KKAVAVGHSQ	10	Unmodified	_KKAVAVGHSQ_					0	0	0		MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.798583984375	2	512.79854	1023.58253	1.0722	0.00054984	-0.49766	-0.0002552	0.57457	0.00029464	512.7981287914139	15.861	0.13383	15.861	15.775	15.909	0					5	3	2	0	0	0	0.43708	1	4198	4198		40.058	7.2458	1	137680			20627	3856	13106	13162	20938	20938					0.07167967428711108
KKAVPSAS	8	Unmodified	_KKAVPSAS_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant;CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.2371520996094	2	394.237253	786.459953	0.49497	0.00019514	-0.92066	-0.00036296	-0.42569	-0.00016782	394.2369534651828	32.923	0.46893	32.923	32.596	33.065	0					26	11	3	0	0	0	0.52345	1	12452	12452		57.811	7.7867	1	667600			20628	9029	13107	13163	20939	20939					0.05818130697275592
KKAVPSAS	8	Unmodified	_KKAVPSAS_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant;CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.2370300292969	2	394.237253	786.459953	-2.2184	-0.00087457	1.2089	0.00047659	-1.0095	-0.00039798	394.2381048141835	32.499	0.12958	32.499	32.41	32.539	0					6	4	2	0	0	0	0.67394	1	11302	11302		37.159	6.6555	1	60913			20629	9029	13107	13163	20940	20940					0.05818130697275592
KKAYEQAKGK	10	Unmodified	_KKAYEQAKGK_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.833251953125	2	575.83258	1149.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.341	1	17.341	16.841	17.841	0								0	0	0	0.2063	1	5133	5133		51.193	0	1				20630	6942	13108	13164	20941	20941					0.08176792288713841
KKCCVFSCGKK	11	3 Carbamidomethyl (C)	_KKC(Carbamidomethyl (C))C(Carbamidomethyl (C))VFSC(Carbamidomethyl (C))GKK_	KKC(1)C(1)VFSC(1)GKK		KKC(56)C(56)VFSC(56)GKK		0	3	0		nc|ENSG00000249139|O95925-2|EPPIN;ENSG00000101448|ENST00000354280|EPPIN;nc|ENSG00000249139|O95925-3|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	701.3413696289062	2	701.343617	1400.67268	-2.3625	-0.0016569	-0.56095	-0.00039342	-2.9234	-0.0020503	701.3431685873876	16.55	0.42014	16.55	16.438	16.858	0					23	10	3	0	0	0	0.35529	1	4508	4508		56.434	16.376	1	400020			20631	11788	13109	13165	20942	20942	470;471;472				-0.011628106210537226
KKCIGLIYVN	10	Carbamidomethyl (C)	_KKC(Carbamidomethyl (C))IGLIYVN_	KKC(1)IGLIYVN		KKC(55)IGLIYVN		0	1	0		ZEB2|p.S339Y|1|0.33|ENSG00000169554|chr2:144400171-144400171|G/T|missense_variant	ZEB2|p.S339Y|1|0.33|ENSG00000169554|chr2:144400171-144400171|G/T|missense_variant	ZEB2|p.S339Y|1|0.33|ENSG00000169554|chr2:144400171-144400171|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.2348937988281	3	403.233765	1206.67946	3.1374	0.0012651	-0.21822	-8.7993E-05	2.9192	0.0011771	403.2336940454792	22.412	0.21781	22.412	22.304	22.521	0					9	4	3	0	0	0	0.41384	1	7465	7465		54.722	11.072	1	858040			20632	23135	13110	13166	20943	20943	759				0.08439193593494565
KKCISCVIT	9	Unmodified	_KKCISCVIT_					0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.18463134765625	3	332.185646	993.535108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.579	1	33.579	33.079	34.079	0								0	0	0	0.31623	1	12863	12863		24.519	1.4767	1		+		20633	14759	13111	13167	20944	20944					0.03808228841830896
KKCPRESIR	9	Unmodified	_KKCPRESIR_					0	0	0		NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.81689453125	2	558.81895	1115.62335	-0.8169	-0.0004565	-2.2239	-0.0012428	-3.0408	-0.0016993	558.8175925333118	20.18	0.18903	20.18	20.076	20.265	0					10	4	3	0	0	0	0.41958	1	5630	5630		19.104	0	1	94171			20634	11405	13112	13168	20945	20945					0.07015985476664355
KKCVTLEK	8	Unmodified	_KKCVTLEK_					0	0	0		ENSG00000215277|ENST00000430154|RNF212B	ENSG00000215277|ENST00000430154|RNF212B	ENSG00000215277|ENST00000430154|RNF212B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7809753417969	2	474.78097	947.547388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.305	1	12.305	11.805	12.805	0								0	0	0	1.7419	1	2426	2426		74.255	5.4682	1				20635	7829	13113	13169	20946	20946					0.07151588576550694
KKDAVIFIVDG	11	Unmodified	_KKDAVIFIVDG_					0	0	0			REV__tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1	REV__tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.8495483398438	2	602.850438	1203.68632	0.14543	8.767E-05	-0.35903	-0.00021644	-0.2136	-0.00012877	602.8502476706572	33.279	0.21286	33.279	33.164	33.377	0					15	8	2	0	0	0	0.75314	1	10782	10782		19.104	0	1	67866	+		20636	22024	13114	13170	20947	20947					0.09262829745671297
KKDERLKQ	8	Unmodified	_KKDERLKQ_					0	0	0			REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|22|1|sense	REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|22|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8125	2	522.811648	1043.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.257	1	18.257	17.757	18.757	0								0	0	0	1.7419	1	5431	5431		60.118	7.1816	1		+		20637	20825	13115	13171	20948	20948					0.08868236600164892
KKDHAKFKE	9	Unmodified	_KKDHAKFKE_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.88079833984375	3	377.548741	1129.62439	0.69033	0.00026063	-4.3943	-0.0016591	-3.704	-0.0013984	377.8807814069779	23.496	0.70991	23.496	23.318	24.028	0					40	14	4	0	0	0	0.40353	1	7977	7977		41.427	9.8968	1	2483600	+		20638	14016	13116	13172	20949	20949					0.06476523117225952
KKDKDKVS	8	Unmodified	_KKDKDKVS_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant;ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant;ANKRD11|p.D1104Mfs*214|1|0.28|ENSG00000167522|chr16:89283233-89283233|T/-|frameshift_variant;ENST00000567699.1_1_16:89368006-89383442:-|nuORF;ANKRD11|p.N452Ifs*3|1|0.39|ENSG00000167522|chr16:89285187-89285187|T/-|frameshift_variant	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2798156738281	2	474.279649	946.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.911	1	47.911	47.411	48.411	0								0	0	0	1.7419	1	18223	18223		18.324	2.6826	1				20639	5996	13117	13173	20950	20950					0.06933456443232444
KKDKSYWSVK	10	Unmodified	_KKDKSYWSVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.5738220214844	3	423.571434	1267.69247	2.5295	0.0010714	2.8992	0.001228	5.4287	0.0022994	423.57269329638694	14.634	0.11933	14.634	14.575	14.694	0					4	2	2	0	0	0	0.41384	1	3699	3699		54.722	0.37901	1	762830	+		20640	15602;22247;21074	13118	13174	20951	20951					0.06933347977201265
KKDLSILLG	9	Unmodified	_KKDLSILLG_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.8158874511719	2	493.815867	985.617182	-0.081206	-4.0101E-05	0.35585	0.00017573	0.27465	0.00013562	493.81600556810815	27.605	1.0456	27.605	27.372	28.417	0					64	34	3	0	0	0	0.24334	1	8462	8462		49.442	1.7842	1	164750	+		20641	17776	13119	13175	20952	20952					0.12379790516820321
KKDLSLDLL	9	Unmodified	_KKDLSLDLL_					0	0	0		nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.88031005859375	3	348.881497	1043.62266	0.49868	0.00017398	-1.5121	-0.00052753	-1.0134	-0.00035355	348.88087197308073	29.194	0.41126	29.194	29.073	29.485	0					22	10	4	0	0	0	0.30951	1	10376	10376		49.442	5.0644	1	721600			20642	11578	13120	13176	20953	20953					0.10259469308630287
KKDNVKKE	8	Unmodified	_KKDNVKKE_					0	0	0			REV__tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1	REV__tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.79229736328125	2	494.792924	987.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.698	1	15.698	15.198	16.198	0								0	0	0	1.7419	1	4109	4109		24.519	5.4157	1		+		20643	21838	13121	13177	20954	20954					0.07701145334567627
KKDPSRQAA	9	Unmodified	_KKDPSRQAA_					0	0	0			REV__nc|ENSG00000101346|Q9H488-2|POFUT1	REV__nc|ENSG00000101346|Q9H488-2|POFUT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7801818847656	2	500.780348	999.546142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.544	1	20.544	20.044	21.044	0								0	0	0	0.28666	1	5517	5517		37.812	0.65241	1		+		20644	13600	13122	13178	20955	20955					0.046350905319854974
KKDQTLRYLSL	11	Unmodified	_KKDQTLRYLSL_					0	0	0			REV__ENST00000476479.1_1_7:55479080-55499010:+|nuORF	REV__ENST00000476479.1_1_7:55479080-55499010:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	682.8971557617188	2	682.898451	1363.78235	-1.6551	-0.0011303	-0.74497	-0.00050874	-2.4001	-0.001639	682.8978890554383	41.565	1.2617	41.565	40.769	42.031	0					79	48	2	0	0	0	0.65797	1	16119	16119		31.634	6.0602	1	105290	+		20645	14656	13123	13179	20956	20956					0.11500977585819783
KKDYQYPKS	9	Unmodified	_KKDYQYPKS_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7;ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.803955078125	2	578.803488	1155.59242	0.78245	0.00045288	-0.35341	-0.00020456	0.42904	0.00024833	578.8032426351572	31.883	0.28509	31.883	31.788	32.073	0					20	11	3	0	0	0	0.25716	1	10258	10258		54.776	3.4409	1	145910			20646	4641	13124	13180	20957	20957					0.020851106434292888
KKEAITYRE	9	Unmodified	_KKEAITYRE_					0	0	0		ENSG00000168779|ENST00000483851|SHOX2;nc|ENSG00000168779|O60902|SHOX2;nc|ENSG00000168779|O60902-3|SHOX2	ENSG00000168779|ENST00000483851|SHOX2	ENSG00000168779|ENST00000483851|SHOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.3157958984375	2	569.316763	1136.61897	0.092347	5.2575E-05	-2.9784	-0.0016957	-2.8861	-0.0016431	569.3150375530053	12.35	0.14644	12.35	12.265	12.411	0					9	5	2	0	0	0	0.22823	1	2573	2573		60.118	8.7828	1	119190			20647	6122	13125	13181	20958	20958					0.0561279953471967
KKEDIVNGAL	10	Unmodified	_KKEDIVNGAL_					0	0	0		tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1	tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1	tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8134155273438	2	543.811313	1085.60807	1.8219	0.00099078	0.55265	0.00030054	2.3746	0.0012913	544.312916228765	29.54	0.063263	29.54	29.497	29.561	0					4	2	2	0	0	0	0.55603	1	9335	9335		39.253	0	1	53007			20648	22610	13126	13182	20959	20959					0.06869397160471635
KKEEEELVA	9	Unmodified	_KKEEEELVA_					0	0	0		ENST00000592920.5_1_19:55652034-55658489:-|nuORF;nc|ENSG00000130595|P45378-5|TNNT3;nc|ENSG00000130595|P45378-7|TNNT3;nc|ENSG00000130595|P45378-4|TNNT3;nc|ENSG00000105048|P13805-2|TNNT1;nc|ENSG00000130595|P45378-6|TNNT3;ENSG00000130595|ENST00000278317|TNNT3;nc|ENSG00000130595|P45378-3|TNNT3;nc|ENSG00000105048|P13805-3|TNNT1;nc|ENSG00000130595|P45378|TNNT3;ENSG00000105048|ENST00000588981|TNNT1	ENST00000592920.5_1_19:55652034-55658489:-|nuORF	ENST00000592920.5_1_19:55652034-55658489:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.788330078125	2	537.787504	1073.56045	1.8931	0.0010181	-0.39475	-0.00021229	1.4984	0.00080581	537.7872005196573	20.322	0.97096	20.322	19.859	20.83	0					66	19	5	0	0	0	0.17854	1	6649	6649		64.207	64.207	1	14080000			20649	2325	13127	13183	20960	20960					0.02661698169617921
KKEETGKK	8	Unmodified	_KKEETGKK_					0	0	0			REV__ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant	REV__ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2793884277344	2	474.279649	946.544745	0.69788	0.00033099	-1.4851	-0.00070436	-0.78723	-0.00037337	474.27903366938347	11.893	3.6471	11.893	11.767	15.414	0					202	83	5	0	0	0	0.50061	1	3633	3633		60.118	5.3419	1	247480000	+		20650	12259	13128	13184	20961	20961					0.06933456443243813
KKEEVLKRGQ	10	Unmodified	_KKEEVLKRGQ_					0	0	0			REV__CCDC127|p.C174*|1|0.12|ENSG00000164366|chr5:205558-205558|G/-|frameshift_variant	REV__CCDC127|p.C174*|1|0.12|ENSG00000164366|chr5:205558-205558|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.5799560546875	3	405.5787	1213.71427	3.1243	0.0012672	-0.024273	-9.8448E-06	3.1001	0.0012573	405.5786472374309	20.12	0.46634	20.12	20.011	20.477	0					23	9	4	0	0	0	0.41384	1	6350	6350		54.722	9.7001	1	2385200	+		20651	12352	13129	13185	20962	20962					0.11596152725815045
KKEGEKIR	8	Unmodified	_KKEGEKIR_					0	0	0		nc|ENSG00000279980|Q9BY60|GABARAPL3;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	nc|ENSG00000279980|Q9BY60|GABARAPL3	nc|ENSG00000279980|Q9BY60|GABARAPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.3009338378906	2	494.300916	986.587279	0.048746	2.4095E-05	-0.38819	-0.00019188	-0.33944	-0.00016779	494.3007194462053	16.598	0.15724	16.598	16.516	16.673	0					8	4	3	0	0	0	0.53424	1	3966	3966		56.721	12.604	1	255840			20652	4302	13130	13186	20963	20963					0.09344851571472645
KKEGEKIR	8	Unmodified	_KKEGEKIR_					0	0	0		nc|ENSG00000279980|Q9BY60|GABARAPL3;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	nc|ENSG00000279980|Q9BY60|GABARAPL3	nc|ENSG00000279980|Q9BY60|GABARAPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.3009338378906	2	494.300916	986.587279	-2.5105	-0.0012409	1.9902	0.00098377	-0.52026	-0.00025717	494.30191734033224	16.591	0.15909	16.591	16.506	16.666	0					7	4	2	0	0	0	0.29286	1	3958	3958		84.916	8.1414	1	431180			20653	4302	13130	13186	20964	20964					0.09344851571472645
KKEGNQFYQ	9	Unmodified	_KKEGNQFYQ_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.2861328125	2	571.285463	1140.55637	1.7482	0.00099874	-0.82898	-0.00047359	0.91925	0.00052515	571.2850733298275	27.628	0.2199	27.628	27.542	27.762	0					10	5	3	0	0	0	0.17854	1	9666	9666		64.207	5.4253	1	347090	+		20654	13402	13131	13187	20965	20965					-0.008283465334216089
KKEIEAAI	8	Unmodified	_KKEIEAAI_					0	0	0		ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2711181640625	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.766	1	32.766	32.266	33.266	0								0	0	0	1.7419	1	12061	12061		50.025	4.0726	1				20655	2311	13132	13188	20966	20966					0.07378955557271638
KKEIEELQ	8	Unmodified	_KKEIEELQ_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.288330078125	2	508.784764	1015.55498	2.9926	0.0015226	4.0768	0.0020742	7.0694	0.0035968	509.28736138490297	17.69	0.56205	17.69	17.353	17.915	0					22	11	4	0	0	0	0.49216	1	5198	5198		60.972	0	1	1446900			20656	2899	13133	13189	20967	20967					0.04782019377819324
KKEIKNVP	8	Unmodified	_KKEIKNVP_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.30035400390625	2	478.300384	954.586216	0.43115	0.00020622	-0.90536	-0.00043303	-0.47421	-0.00022681	478.29989015673857	12.116	0.18536	12.116	11.975	12.16	0					13	6	3	0	0	0	0.46905	1	2457	2457		63.306	7.8021	1	294840			20657	22640	13134	13190	20968	20968					0.10710637202566886
KKEISPGVMI	10	Oxidation (M)	_KKEISPGVM(Oxidation (M))I_		KKEISPGVM(1)I		KKEISPGVM(100)I	0	0	1		CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;CHD9|p.F760Lfs*16|3|0.47|ENSG00000177200|chr16:53229088-53229088|T/-|frameshift_variant;CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3184814453125	2	559.317917	1116.62128	1.7729	0.00099163	-1.2076	-0.00067543	0.56533	0.0003162	559.3172620923226	31.757	0.20774	31.757	31.653	31.861	0					11	4	3	0	0	0	0.065649	1	11999	11999		104.06	24.568	1	660930			20658	508	13135	13191	20969	20969		26			0.06763511948201995
KKEKHVEP	8	Unmodified	_KKEKHVEP_					0	0	0		TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant;TRDN|p.V538Cfs*8|1|0.28|ENSG00000186439|chr6:123273350-123273350|T/-|frameshift_variant;TRDN|p.T573Nfs*11|1|0.39|ENSG00000186439|chr6:123271141-123271142|-/T|frameshift_variant;TRDN|p.E606Sfs*14|1|0.05|ENSG00000186439|chr6:123260627-123260628|-/CCAAAAGGCT|frameshift_variant;ENSG00000186439|ENST00000334268|TRDN	TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant	TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7873840332031	2	497.787641	993.56073	-0.71654	-0.00035669	0.2966	0.00014764	-0.41994	-0.00020904	497.78776420412964	29.591	0.55199	29.591	29.49	30.042	0					28	11	4	0	0	0	0.77246	1	11130	11130		24.203	0	1	4951600			20659	7137	13136	13192	20970	20970					0.06369162680141471
KKENIVVYL	9	Unmodified	_KKENIVVYL_					0	0	0		tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.3348999023438	2	553.334424	1104.6543	1.3175	0.00072899	-0.3915	-0.00021663	0.92595	0.00051236	553.3340059843207	29.457	0.16812	29.457	29.354	29.523	0					11	5	3	0	0	0	0.42902	1	9287	9287		39.253	0	1	198030			20660	22898	13137	13193	20971	20971					0.10615462062560255
KKENNGVLKK	10	Unmodified	_KKENNGVLKK_					0	0	0		DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant;ENSG00000226372|ENST00000441525|DCAF8L1;DCAF8L2|p.F411L|1|0.37|ENSG00000189186|chrX:27748128-27748128|C/A|missense_variant;ENSG00000189186|ENST00000451261|DCAF8L2;DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant	DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant;ENSG00000189186|ENST00000451261|DCAF8L2	DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.3543090820312	2	579.35368	1156.69281	1.4412	0.00083499	-0.33923	-0.00019653	1.102	0.00063845	579.3534588275048	17.902	0.1428	17.902	17.816	17.959	0					5	3	2	0	0	0	0.04084	1	5150	5150		112.41	13.398	1	655820			20661	745;746	13138	13194	20972	20972					0.12072767697077325
KKEPPGKLKE	10	Unmodified	_KKEPPGKLKE_					0	0	0			REV__TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant	REV__TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.23748779296875	3	385.236163	1152.68666	3.2177	0.0012396	0.18897	7.28E-05	3.4067	0.0013124	385.2362234553154	34.368	1.3584	34.368	34.261	35.62	0					67	27	5	0	0	0	0.60281	1	13176	13176		33.922	1.1711	1	9968100	+		20662	14341	13139	13195	20973	20973					0.1164224946558079
KKEPSMYV	8	Unmodified	_KKEPSMYV_					0	0	0			REV__nc|ENSG00000152595|Q9NQ76-2|MEPE	REV__nc|ENSG00000152595|Q9NQ76-2|MEPE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2596130371094	2	491.257328	980.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.164	1	21.164	20.664	21.664	0								0	0	0	1.7419	1	6975	6975		37.159	1.5408	1		+		20663	21067	13140	13196	20974	20974					0.009073093055462778
KKERVLVT	8	Unmodified	_KKERVLVT_					0	0	0		tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.8134460449219	2	486.813659	971.612765	0.81881	0.00039861	-1.2237	-0.00059573	-0.40492	-0.00019712	486.8129520099245	22.029	0.16927	22.029	21.919	22.089	0					7	3	3	0	0	0	0.59411	1	7279	7279		50.025	0	1	1646500			20664	22949	13141	13197	20975	20975					0.12582326093911433
KKESPRPS	8	Unmodified	_KKESPRPS_					0	0	0			REV__SLC16A6|p.P282L|1|0.28|ENSG00000108932|chr17:68271315-68271315|G/A|missense_variant	REV__SLC16A6|p.P282L|1|0.28|ENSG00000108932|chr17:68271315-68271315|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7640075683594	2	464.764166	927.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.225	1	12.225	11.725	12.725	0								0	0	0	1.7419	1	2699	2699		68.787	2.9837	1		+		20665	13890	13142	13198	20976	20976					0.04712303128997064
KKFEEPKK	8	Unmodified	_KKFEEPKK_					0	0	0			REV__DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant	REV__DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.3045654296875	2	517.305667	1032.59678	1.2901	0.00066739	-2.3993	-0.0012412	-1.1092	-0.0005738	517.3045142870433	15.576	0.25265	15.576	15.533	15.786	0					11	6	3	0	0	0	0.2678	1	4062	4062		82.305	2.5924	1	1686000	+		20666	12728	13143	13199	20977	20977					0.08178619856994374
KKFEIVIAE	9	Unmodified	_KKFEIVIAE_					0	0	0			REV__tr|U7SV81|U7SV81_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01551PE=4SV=1	REV__tr|U7SV81|U7SV81_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01551PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.820556640625	2	538.82115	1075.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.341	1	32.341	31.841	32.841	0								0	0	0	0.34598	1	10449	10449		32.812	12.816	1		+		20667	21990	13144	13200	20978	20978					0.0929577317122039
KKFFPTLEE	9	Unmodified	_KKFFPTLEE_					0	0	0			REV__CON__P81644	REV__CON__P81644	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.20819091796875	3	380.209613	1137.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.094	1	25.094	24.594	25.594	0								0	0	0	0.1633	1	8743	8743		56.721	5.3856	1		+	+	20668	12599	13145	13201	20979	20979					0.04371182791578576
KKFGLHFIAL	10	Unmodified	_KKFGLHFIAL_					0	0	0			REV__GJA9|p.E229A|1|0.23|ENSG00000131233|chr1:38875413-38875413|T/G|missense_variant	REV__GJA9|p.E229A|1|0.23|ENSG00000131233|chr1:38875413-38875413|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.3634033203125	2	587.360776	1172.707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.304	1	20.304	19.804	20.804	0								0	0	0	0.38475	1	5645	5645		16.473	0	1		+		20669	20691	13146	13202	20980	20980					0.12755464916040182
KKFGRQAPK	9	Unmodified	_KKFGRQAPK_					0	0	0			REV__ENST00000265087.8_1_5:172743950-172744151:-|nuORF	REV__ENST00000265087.8_1_5:172743950-172744151:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	353.88525390625	3	353.885576	1058.6349	0.42817	0.00015152	-1.6513	-0.00058436	-1.2231	-0.00043284	353.88501494072233	16.385	0.10183	16.385	16.32	16.422	0					7	4	2	0	0	0	0.51817	1	3725	3725		37.812	7.3079	1	91549	+		20670	18071	13147	13203	20981	20981					0.10792550562291581
KKFHFLKGA	9	Unmodified	_KKFHFLKGA_					0	0	0		ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-4|GREB1	ENSG00000196208|ENST00000381486|GREB1	ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3256225585938	2	538.324194	1074.63383	1.0097	0.00054353	0.36161	0.00019466	1.3713	0.00073819	538.324619999695	12.854	0.077427	12.854	12.81	12.887	0					7	4	2	0	0	0	0.13267	1	2519	2519		45.952	0	1	49349			20671	7339	13148	13204	20982	20982					0.09950336193423936
KKFKELQK	8	Unmodified	_KKFKELQK_					0	0	0		SYNE1|p.L8485F|1|0.32|ENSG00000131018|chr6:152139955-152139955|G/A|missense_variant	SYNE1|p.L8485F|1|0.32|ENSG00000131018|chr6:152139955-152139955|G/A|missense_variant	SYNE1|p.L8485F|1|0.32|ENSG00000131018|chr6:152139955-152139955|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.82958984375	2	524.829309	1047.64407	0.094509	4.9601E-05	0.50797	0.0002666	0.60248	0.0003162	524.829574612887	23.912	0.35541	23.912	23.819	24.174	0					18	8	3	0	0	0	0.2451	1	7990	7990		110.12	0	1	915560			20672	22506	13149	13205	20983	20983					0.12214899127980061
KKFLEKTND	9	Unmodified	_KKFLEKTND_					0	0	0		tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.8102416992188	2	561.811313	1121.60807	-0.41193	-0.00023143	-1.3363	-0.00075077	-1.7483	-0.00098219	561.8106817491669	15.176	0.093292	15.176	15.109	15.202	0					10	4	3	0	0	0	0.33044	1	3401	3401		47.657	3.2801	1	573070			20673	22676	13150	13206	20984	20984					0.05213397160491695
KKFNNLAQ	8	Unmodified	_KKFNNLAQ_					0	0	0			REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.77593994140625	2	481.774534	961.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.471	1	17.471	16.971	17.971	0								0	0	0	1.7419	1	5194	5194		55.504	0	1		+		20674	21843	13151	13207	20985	20985					0.05220893508658264
KKFNPTTIA	9	Unmodified	_KKFNPTTIA_					0	0	0			REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2962951660156	2	510.297842	1018.58113	-1.8073	-0.00092226	-1.469	-0.00074962	-3.2763	-0.0016719	510.2970237797315	19.081	0.097548	19.081	19.009	19.107	0					4	2	2	0	0	0	0.25716	1	5108	5108		54.776	5.2403	1	126340	+		20675	14937	13152	13208	20986	20986					0.07258333339950696
KKFQKNEQQ	9	Unmodified	_KKFQKNEQQ_					0	0	0		ENST00000578730.1_1_4:1243983-1244322:+|nuORF	ENST00000578730.1_1_4:1243983-1244322:+|nuORF	ENST00000578730.1_1_4:1243983-1244322:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.3209228515625	2	589.319837	1176.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.059	1	15.059	14.559	15.559	0								0	0	0	0.22075	1	3304	3304		32.812	0	1				20676	10853	13153	13209	20987	20987					0.0438731776628174
KKFSKILSK	9	Unmodified	_KKFSKILSK_					0	0	0		ENST00000269214.9_1_18:19155183-19155270:-|nuORF	ENST00000269214.9_1_18:19155183-19155270:-|nuORF	ENST00000269214.9_1_18:19155183-19155270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.2377014160156	3	360.237615	1077.69102	0.29507	0.00010629	-0.40232	-0.00014493	-0.10726	-3.8638E-05	360.2374482361468	14.951	0.11379	14.951	14.846	14.96	0					4	2	2	0	0	0	0.44593	1	3979	3979		45.022	11.101	1	90205			20677	8373	13154	13210	20988	20988					0.15527758679127146
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	316.6819152832031	2	316.179738	630.344923	1.5178	0.00047988	0.76311	0.00024128	2.2809	0.00072116	316.1799458943251	44.007	0.34813	44.007	43.928	44.276	0					32	19	2	0	0	0	0.7764	1	17163	17163		4.6817	0	1	199030			20678	7625	13155	13211	20989	20989					0.014964462861485117
KKGAGHGG	8	Unmodified	_KKGAGHGG_					0	0	0		ENST00000517637.2_1_11:67010562-67011027:+|nuORF	ENST00000517637.2_1_11:67010562-67011027:+|nuORF	ENST00000517637.2_1_11:67010562-67011027:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.200927734375	2	356.198462	710.382371	0.4882	0.0001739	4.4671	0.0015912	4.9553	0.0017651	356.20068312101125	25.614	0.13873	25.614	25.525	25.664	0					7	3	3	0	0	0	0.78142	1	8788	8788		1.4648	1.4648	1	156940			20679	10273	13156	13212	20990	20990					0.015595375517705179
KKGEFGQK	8	Unmodified	_KKGEFGQK_					0	0	0		ENST00000417154.5_1_2:191777940-191778024:+|nuORF	ENST00000417154.5_1_2:191777940-191778024:+|nuORF	ENST00000417154.5_1_2:191777940-191778024:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2611083984375	2	461.261259	920.507966	-0.44613	-0.00020578	0.37368	0.00017236	-0.072455	-3.3421E-05	461.2614911348095	17.2	0.13834	17.2	17.099	17.238	0					8	4	3	0	0	0	0.37144	1	4046	4046		74.255	5.4682	1	226270			20680	9371	13157	13213	20991	20991					0.0445320461733445
KKGGGAAS	8	Unmodified	_KKGGGAAS_					0	0	0		ENSG00000183864|ENST00000327492|TOB2;nc|ENSG00000183864|Q14106-2|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.1934509277344	2	338.192845	674.371138	1.4833	0.00050163	0.46822	0.00015835	1.9515	0.00065998	338.1929842351625	46.04	0.22356	46.04	45.938	46.162	0					16	13	2	0	0	0	0.78999	1	17750	17750		13.775	0	1	62202			20681	6990	13158	13214	20992	20992					0.02092715457615668
KKGIDLIR	8	Unmodified	_KKGIDLIR_					0	0	0			REV__ENSG00000141384|ENST00000269142|TAF4B	REV__ENSG00000141384|ENST00000269142|TAF4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.8086242675781	2	471.808377	941.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.513	1	15.513	15.013	16.013	0								0	0	0	1.7419	1	3553	3553		45.952	8.7928	1		+		20682	15112	13159	13215	20993	20993					0.12906343439465218
KKGKADTGKK	10	Unmodified	_KKGKADTGKK_					0	0	0		ENST00000398005.3_1_13:59584546-59584735:+|nuORF	ENST00000398005.3_1_13:59584546-59584735:+|nuORF	ENST00000398005.3_1_13:59584546-59584735:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8280029296875	2	530.827298	1059.64004	1.7252	0.00091581	-0.9143	-0.00048533	0.81094	0.00043047	530.8267810633545	14.175	0.21233	14.175	14.12	14.332	0					10	4	3	0	0	0	0.041742	1	3628	3628		90.37	8.1293	1	3285900			20683	9226	13160	13216	20994	20994					0.11260809634268298
KKGKADTGKK	10	Unmodified	_KKGKADTGKK_					0	0	0		ENST00000398005.3_1_13:59584546-59584735:+|nuORF	ENST00000398005.3_1_13:59584546-59584735:+|nuORF	ENST00000398005.3_1_13:59584546-59584735:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.8275146484375	2	530.827298	1059.64004	0.72656	0.00038568	-0.42397	-0.00022505	0.30259	0.00016062	530.8269997546411	14.214	0.17027	14.214	14.103	14.273	0					7	3	3	0	0	0	0.092915	1	3473	3473		85.161	4.7062	1	308600			20684	9226	13160	13216	20995	20995					0.11260809634268298
KKGKADTGKK	10	Unmodified	_KKGKADTGKK_					0	0	0		ENST00000398005.3_1_13:59584546-59584735:+|nuORF	ENST00000398005.3_1_13:59584546-59584735:+|nuORF	ENST00000398005.3_1_13:59584546-59584735:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.8275146484375	2	530.827298	1059.64004	1.6644	0.00088352	-1.2544	-0.00066587	0.41002	0.00021765	530.8266333441325	14.197	0.2702	14.197	14.088	14.358	0					8	5	2	0	0	0	0.071575	1	3486	3486		80.455	0	1	4842900			20685	9226	13160	13216	20996	20996					0.11260809634268298
KKGKVQQAIT	10	Unmodified	_KKGKVQQAIT_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8423461914062	2	550.842948	1099.67134	1.2887	0.00070985	-1.3544	-0.00074604	-0.065694	-3.6187E-05	550.8416972657058	19.71	0.073927	19.71	19.662	19.736	0					4	2	2	0	0	0	0.26198	1	5154	5154		71.877	2.2498	1	60958	+		20686	13211	13161	13217	20997	20997					0.1254938266836234
KKGMIKSSR	9	Oxidation (M)	_KKGM(Oxidation (M))IKSSR_		KKGM(1)IKSSR		KKGM(49)IKSSR	0	0	1		FPR2|p.K276Nfs*40|1|0.04|ENSG00000171049|chr19:51769485-51769486|-/CAATG|frameshift_variant;ENSG00000171049|ENST00000340023|FPR2	FPR2|p.K276Nfs*40|1|0.04|ENSG00000171049|chr19:51769485-51769486|-/CAATG|frameshift_variant	FPR2|p.K276Nfs*40|1|0.04|ENSG00000171049|chr19:51769485-51769486|-/CAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8073120117188	2	525.808051	1049.60155	-1.2334	-0.00064854	-1.2375	-0.00065069	-2.4709	-0.0012992	525.8073732829231	15.404	0.14087	15.404	15.33	15.471	0					9	4	3	0	0	0	0.30951	1	3442	3442		49.442	49.442	1	329650			20687	11148	13162	13218	20998	20998		434			0.07873180728120133
KKGPIIQPML	10	Unmodified	_KKGPIIQPML_					0	0	0			REV__ENSG00000139324|ENST00000266712|TMTC3	REV__ENSG00000139324|ENST00000266712|TMTC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8489990234375	2	562.846645	1123.67874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.918	1	15.918	15.418	16.418	0								0	0	0	0.40797	1	4303	4303		16.473	0	1		+		20688	15023	13163	13219	20999	20999					0.12184398944418717
KKGREEEDM	9	Unmodified	_KKGREEEDM_					0	0	0		RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant;nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28;ENST00000488249.1_1_7:127975899-127977248:-|nuORF	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.266357421875	2	561.266413	1120.51827	1.822	0.0010226	2.5594	0.0014365	4.3813	0.0024591	561.2675790372746	38.456	0.75407	38.456	37.902	38.656	0					32	26	2	0	0	0	0.45358	1	14974	14974		37.159	2.9866	1	203970			20689	2434	13164	13220	21000	21000					-0.037166005104154465
KKGRQKDK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KKGRQKDK_					1	0	0			REV__tr|U7SPR2|U7SPR2_FUSNUHotDogACOT-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01870PE=4SV=1	REV__tr|U7SPR2|U7SPR2_FUSNUHotDogACOT-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01870PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3129272460938	2	515.311815	1028.60908	0.055181	2.8435E-05	2.4361	0.0012554	2.4913	0.0012838	515.312706430837	28.849	0.17832	28.849	28.758	28.936	0					10	6	2	0	0	0	0.65148	1	9343	9343		40.778	18.818	1	52984	+		20690	21827	13165	13221	21001	21001					0.09591656320048969
KKGRQLGP	8	Unmodified	_KKGRQLGP_					0	0	0		ENST00000438378.2_1_2:132278034-132278601:+|nuORF	ENST00000438378.2_1_2:132278034-132278601:+|nuORF	ENST00000438378.2_1_2:132278034-132278601:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.27667236328125	2	442.277244	882.539935	0.74116	0.0003278	-1.9432	-0.00085945	-1.2021	-0.00053165	442.27642406131105	13.809	0.20831	13.809	13.655	13.863	0					6	4	2	0	0	0	0.60719	1	3308	3308		47.916	9.1095	1	120840			20691	9548	13166	13222	21002	21002					0.09396617091135795
KKGRRVTQ	8	Unmodified	_KKGRRVTQ_					0	0	0		COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant;COL5A1|p.P870Qfs*204|1|0.5|ENSG00000130635|chr9:134786009-134786009|C/-|frameshift_variant;COL5A1|p.K933Rfs*141|1|0.32|ENSG00000130635|chr9:134795309-134795309|C/-|frameshift_variant;COL5A1|p.G997Afs*77|1|0.22|ENSG00000130635|chr9:134801983-134801983|C/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.8077697753906	2	486.8067	971.598846	1.2384	0.00060287	0.92617	0.00045086	2.1646	0.0010537	486.80720209978193	20.898	0.17898	20.898	20.838	21.017	0					9	5	2	0	0	0	0.29286	1	5676	5676		84.916	15.288	1	596350			20692	612	13167	13223	21003	21003					0.11191093385457407
KKGSDEKK	8	Unmodified	_KKGSDEKK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF;ENST00000515160.5_1_5:95998126-96031662:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.5841369628906	2	460.263999	918.513445	-0.15315	-7.0491E-05	-0.45314	-0.00020856	-0.60629	-0.00027905	460.26381990001175	12.119	0.30262	12.119	12.068	12.37	0					11	7	3	0	0	0	0.66372	1	2639	2639		38.806	0	1	2010500			20693	5038	13168	13224	21004	21004					0.050928834091337194
KKGTAYQVL	9	Unmodified	_KKGTAYQVL_					0	0	0			REV__ENST00000513089.5_1_4:76886972-76894529:-|nuORF	REV__ENST00000513089.5_1_4:76886972-76894529:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.298095703125	2	504.297842	1006.58113	0.6476	0.00032659	-0.48581	-0.00024499	0.16179	8.1592E-05	504.2976121005385	20.73	1.0363	20.73	20.433	21.469	0					58	32	3	0	0	0	0.39215	1	5881	5881		42.396	5.237	1	122570	+		20694	17391	13169	13225	21005	21005					0.0781033333993264
KKGTAYQVL	9	Unmodified	_KKGTAYQVL_					0	0	0			REV__ENST00000513089.5_1_4:76886972-76894529:-|nuORF	REV__ENST00000513089.5_1_4:76886972-76894529:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.29766845703125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.257	1	21.257	20.757	21.757	0								0	0	0	0.21054	1	6892	6892		49.442	3.4693	1		+		20695	17391	13169	13225	21006	21006					0.0781033333993264
KKGTEEKKK	9	Unmodified	_KKGTEEKKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.32763671875	2	538.327131	1074.63971	0.23352	0.00012571	0.61787	0.00033262	0.85139	0.00045833	538.3274129631083	11.093	0.064707	11.093	11.051	11.116	0					8	3	3	0	0	0	0.1424	1	2109	2109		69.628	0.78148	1	299900			20696	1722;261	13170	13226	21007	21007					0.10537389914406958
KKGTNPNLL	9	Unmodified	_KKGTNPNLL_					0	0	0		RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant	RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant	RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7955017089844	2	492.795466	983.57638	0.85152	0.00041962	-0.78372	-0.00038621	0.067795	3.3409E-05	492.7950580071314	14.953	0.11838	14.953	14.894	15.012	0					4	2	2	0	0	0	0.034359	1	3850	3850		104.75	13.97	1	409380			20697	22363	13171	13227	21008	21008					0.08393449197183145
KKGTQDGL	8	Unmodified	_KKGTQDGL_					0	0	0			REV__COLEC12|p.K92Q|1|0.4|ENSG00000158270|chr18:348071-348071|T/G|missense_variant	REV__COLEC12|p.K92Q|1|0.4|ENSG00000158270|chr18:348071-348071|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.73736572265625	2	423.737617	845.460681	-0.8154	-0.00034552	0.56873	0.00024099	-0.24668	-0.00010453	423.7378123420803	33.043	0.29341	33.043	32.854	33.147	0					15	8	3	0	0	0	0.54629	1	12179	12179		55.504	2.1528	1	286940	+		20698	12569	13172	13228	21009	21009					0.03176925346326698
KKGTTGCTDV	10	Unmodified	_KKGTTGCTDV_					0	0	0		nc|ENSG00000138829|P35556-2|FBN2;FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant;FBN2|p.Y2717Lfs*24|1|0.17|ENSG00000138829|chr5:128263469-128263470|-/C|frameshift_variant;FBN2|p.I2832Sfs*65|1|0.4|ENSG00000138829|chr5:128259700-128259700|T/-|frameshift_variant;ENSG00000138829|ENST00000262464|FBN2	nc|ENSG00000138829|P35556-2|FBN2	nc|ENSG00000138829|P35556-2|FBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2533874511719	2	505.252774	1008.491	0.11633	5.8778E-05	1.1651	0.00058868	1.2815	0.00064746	505.25350112145475	38.832	0.25834	38.832	38.713	38.971	0					11	9	2	0	0	0	0.50287	1	15252	15252		32.812	0	1	74998			20699	4297	13173	13229	21010	21010					-0.012910840507970534
KKHAAEVTK	9	Unmodified	_KKHAAEVTK_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.30108642578125	2	506.300916	1010.58728	0.83626	0.0004234	-0.9451	-0.0004785	-0.10884	-5.5104E-05	506.3004589145795	14.985	0.39458	14.985	14.902	15.297	0					12	9	3	0	0	0	0.032383	1	3764	3764		101.6	13.904	1	1700500			20700	7315	13174	13230	21011	21011					0.0824085157147465
KKHIAQLA	8	Unmodified	_KKHIAQLA_					0	0	0			REV__VCP|p.R424H|1|0.37|ENSG00000165280|chr9:35061103-35061103|C/T|missense_variant	REV__VCP|p.R424H|1|0.37|ENSG00000165280|chr9:35061103-35061103|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.787353515625	2	454.787444	907.560336	-0.36181	-0.00016455	-0.028429	-1.2929E-05	-0.39024	-0.00017748	454.7874346933698	27.844	0.38205	27.844	27.606	27.988	0					19	12	2	0	0	0	0.75243	1	8568	8568		26.796	3.7536	1	164550	+		20701	22273	13175	13231	21012	21012					0.10285787750922282
KKHLITTQ	8	Unmodified	_KKHLITTQ_					0	0	0		ENSG00000244005|ENST00000374092|NFS1;nc|ENSG00000244005|Q9Y697-2|NFS1	ENSG00000244005|ENST00000374092|NFS1	ENSG00000244005|ENST00000374092|NFS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7977600097656	2	484.798009	967.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.054	1	14.054	13.554	14.554	0								0	0	0	1.7419	1	2981	2981		29.15	1.0681	1				20702	7962	13176	13232	21013	21013					0.09637753059791976
KKIDGHMY	8	Unmodified	_KKIDGHMY_					0	0	0		ENST00000429272.1_1_2:131051524-131051887:+|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2580871582031	2	496.25512	990.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.769	1	44.769	44.269	45.269	0								0	0	0	1.7419	1	16745	16745		29.15	1.0681	1				20703	9473	13177	13233	21014	21014					5.8448826393942E-05
KKIEEAWE	8	Unmodified	_KKIEEAWE_					0	0	0			REV__UBAP1|p.P256Lfs*5|1|0.39|ENSG00000165006|chr9:34241787-34241787|C/-|frameshift_variant	REV__UBAP1|p.P256Lfs*5|1|0.39|ENSG00000165006|chr9:34241787-34241787|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.771240234375	2	516.771657	1031.52876	0.826	0.00042686	-0.7452	-0.0003851	0.080804	4.1757E-05	516.7713900733487	36.388	0.21317	36.388	36.273	36.487	0					17	9	2	0	0	0	0.65276	1	13016	13016		40.573	0	1	75294	+		20704	16015	13178	13234	21015	21015					0.014257502063401262
KKIFMLAAS	9	Unmodified	_KKIFMLAAS_					0	0	0		nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.86883544921875	3	336.868534	1007.58377	1.4866	0.00050079	-1.2107	-0.00040785	0.27592	9.2949E-05	336.8680826565981	33.245	1.094	33.245	32.596	33.69	0					38	26	2	0	0	0	0.60749	1	12675	12675		20.947	3.582	1	282850			20705	7738	13179	13235	21016	21016					0.0802846547325089
KKIGDEYFT	9	Unmodified	_KKIGDEYFT_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7849731445312	2	550.784764	1099.55498	0.5594	0.00030811	0.51561	0.00028399	1.075	0.0005921	550.7851091593195	11.869	0.59195	11.869	11.706	12.298	0					35	20	2	0	0	0	0.47038	1	2375	2375		35.618	0	1	1290000			20706	5559	13180	13236	21017	21017					0.009180193778092871
KKIGLLTTM	9	Unmodified	_KKIGLLTTM_					0	0	0		SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant;nc|ENSG00000165915|Q96H72-2|SLC39A13;ENSG00000165915|ENST00000362021|SLC39A13	SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.8134765625	2	502.81227	1003.60999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.784	1	54.784	54.284	55.284	0								0	0	0	0.36609	1	19080	19080		20.947	3.582	1				20707	5841	13181	13237	21018	21018					0.10832734644714037
KKINAPSIQ	9	Unmodified	_KKINAPSIQ_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.8030700683594	2	499.803291	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.079	1	30.079	29.579	30.579	0								0	0	0	0.17378	1	10199	10199		54.776	3.4409	1		+		20708	14799	13182	13238	21019	21019					0.09313735714226823
KKINNEQK	8	Unmodified	_KKINNEQK_					0	0	0			REV__tr|U7SSZ1|U7SSZ1_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01554PE=4SV=1	REV__tr|U7SSZ1|U7SSZ1_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01554PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.29022216796875	2	501.290548	1000.56654	0.67836	0.00034006	-0.048789	-2.4458E-05	0.62957	0.0003156	501.2911070338343	15.537	2.0296	15.537	15.328	17.357	0					116	49	5	0	0	0	0.39125	1	4353	4353		51.335	0	1	171490000	+		20709	21887	13183	13239	21020	21020					0.06628261191804086
KKIQFADQ	8	Unmodified	_KKIQFADQ_					0	0	0		nc|ENSG00000158467|Q96HN2-2|AHCYL2	nc|ENSG00000158467|Q96HN2-2|AHCYL2	nc|ENSG00000158467|Q96HN2-2|AHCYL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.27459716796875	2	489.274367	976.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.39	1	20.39	19.89	20.89	0								0	0	0	1.7419	1	6318	6318		31.53	1.2121	1				20710	11607	13184	13240	21021	21021					0.04497473788796924
KKISMNLPL	9	Unmodified	_KKISMNLPL_					0	0	0			REV__RGSL1|p.C239G|1|0.28|ENSG00000121446|chr1:182473826-182473826|T/G|missense_variant	REV__RGSL1|p.C239G|1|0.28|ENSG00000121446|chr1:182473826-182473826|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.3161010742188	2	522.31772	1042.62089	0.084027	4.3889E-05	-0.81753	-0.00042701	-0.7335	-0.00038312	522.3162690346182	32.799	0.47338	32.799	32.611	33.084	0					28	12	3	0	0	0	0.35021	1	12059	12059		45.972	6.7194	1	312050	+		20711	21461	13185	13241	21022	21022					0.10128137019023598
KKITMDPGS	9	Unmodified	_KKITMDPGS_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.760009765625	2	488.760235	975.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.863	1	21.863	21.363	22.363	0								0	0	0	0.21054	1	7315	7315		49.442	8.6634	1		+		20712	21080	13186	13242	21023	21023					0.01718407817213574
KKKAAERKE	9	Unmodified	_KKKAAERKE_					0	0	0			REV__ENSG00000130921|ENST00000253233|MTRFR	REV__ENSG00000130921|ENST00000253233|MTRFR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.3334350585938	2	544.332747	1086.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.571	1	14.571	14.071	15.071	0								0	0	0	0.16453	1	3578	3578		56.434	5.0983	1		+		20713	14603	13187	13243	21024	21024					0.11108212008548435
KKKAGPGSL	9	Unmodified	_KKKAGPGSL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.27899169921875	2	443.279452	884.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.613	1	36.613	36.113	37.113	0								0	0	0	0.23459	1	13822	13822		45.952	8.7928	1				20714	5346	13188	13244	21025	21025					0.09746081514037996
KKKEEVQELIQ	11	Unmodified	_KKKEEVQELIQ_					0	0	0			REV__nc|ENSG00000149488|Q8TDI7-3|TMC2	REV__nc|ENSG00000149488|Q8TDI7-3|TMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.6000671386719	3	457.93292	1370.77693	-0.15334	-7.0218E-05	3.4495	0.0015797	3.2962	0.0015094	457.9345655742161	15.053	0.11901	15.053	14.994	15.113	0					4	2	2	0	0	0	0.60833	1	4049	4049		36.318	2.2311	1	57213	+		20715	15424	13189	13245	21026	21026					0.10637254003336238
KKKEGSLY	8	Unmodified	_KKKEGSLY_					0	0	0			REV__ENST00000482948.5_1_5:137536747-137548896:-|nuORF	REV__ENST00000482948.5_1_5:137536747-137548896:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.776123046875	2	476.776742	951.538931	-0.63264	-0.00030163	0.28509	0.00013593	-0.34755	-0.0001657	476.77684326705605	38.501	0.4938	38.501	38.218	38.712	0					24	10	3	0	0	0	0.68754	1	15050	15050		35.201	2.3883	1	428840	+		20716	12387	13190	13246	21027	21027					0.061223579315765164
KKKGCRLVS	9	Carbamidomethyl (C)	_KKKGC(Carbamidomethyl (C))RLVS_	KKKGC(1)RLVS		KKKGC(120)RLVS		0	1	0			REV__ENST00000580333.1_1_17:37356597-37358721:+|nuORF	REV__ENST00000580333.1_1_17:37356597-37358721:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3241577148438	2	538.323868	1074.63318	1.9109	0.0010287	-1.4584	-0.0007851	0.4525	0.00024359	538.3232623024003	13.058	0.32597	13.058	12.971	13.297	0					17	7	4	0	0	0	0.023074	1	3081	3081		116.9	6.7837	1	1107600	+		20717	12475	13191	13247	21028	21028	489				0.09885173482052778
KKKGLNSELLF	11	Unmodified	_KKKGLNSELLF_					0	0	0			REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.2598571777344	3	426.258967	1275.75507	0.91236	0.0003889	0.98574	0.00042018	1.8981	0.00080908	426.25949370903214	21.019	0.1654	21.019	20.913	21.078	0					9	3	4	0	0	0	0.67983	1	6917	6917		29.551	1.4693	1	650970	+		20718	14736	13192	13248	21029	21029					0.12822494045417443
KKKGWREK	8	Unmodified	_KKKGWREK_					0	0	0		ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.324951171875	2	530.324725	1058.6349	1.2056	0.00063937	-1.0126	-0.00053703	0.19298	0.00010234	530.324382730892	16.407	0.11729	16.407	16.334	16.451	0					5	3	2	0	0	0	0.46905	1	3891	3891		63.306	8.5839	1	158010			20719	8861	13193	13249	21030	21030					0.10792550562291581
KKKHFLPH	8	Unmodified	_KKKHFLPH_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.5463562011719	3	345.546783	1033.61852	-0.034608	-1.1959E-05	-0.86302	-0.00029821	-0.89762	-0.00031017	345.5463787973603	32.385	0.26988	32.385	32.27	32.54	0					10	5	3	0	0	0	0.79719	1	12216	12216		18.324	7.2277	1	216640	+		20720	12458	13194	13250	21031	21031					0.10305469396212175
KKKIMGVG	8	Unmodified	_KKKIMGVG_					0	0	0		ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7727966308594	2	430.772948	859.531344	-0.34824	-0.00015001	0.76243	0.00032844	0.41419	0.00017842	430.77324201640437	31.951	0.16233	31.951	31.84	32.002	0					8	5	2	0	0	0	0.79176	1	11058	11058		21.702	12.232	1	49330			20721	8388	13195	13251	21032	21032					0.0959592713031725
KKKKEQLQQ	9	Unmodified	_KKKKEQLQQ_					0	0	0		MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.353759765625	2	579.35368	1156.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.892	1	17.892	17.392	18.392	0								0	0	0	0.3119	1	5394	5394		32.812	4.9302	1				20722	5083	13196	13252	21033	21033					0.12072767697100062
KKKKKFSF	8	Unmodified	_KKKKKFSF_					0	0	0		ENSG00000175130|ENST00000329421|MARCKSL1	ENSG00000175130|ENST00000329421|MARCKSL1	ENSG00000175130|ENST00000329421|MARCKSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.8330688476562	2	520.834394	1039.65424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.827	1	10.827	10.327	11.327	0								0	0	0	1.7419	1	2098	2098		65.803	0	1				20723	6534	13197	13253	21034	21034					0.13599506853233834
KKKKKGGGGP	10	Unmodified	_KKKKKGGGGP_					0	0	0		nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	328.8818359375	3	328.881943	983.623999	0.28544	9.3876E-05	-0.8186	-0.00026922	-0.53316	-0.00017535	328.88168999515466	11.635	0.062067	11.635	11.603	11.665	0					4	2	2	0	0	0	0.65895	1	2193	2193		27.047	1.4733	1	115110			20724	11459	13198	13254	21035	21035					0.1315314818805291
KKKKKKKRGR	10	Unmodified	_KKKKKKKRGR_					0	0	0		ENST00000549136.1_1_12:95869884-95877058:+|nuORF;nc|ENSG00000111142|P50579-3|METAP2	ENST00000549136.1_1_12:95869884-95877058:+|nuORF	ENST00000549136.1_1_12:95869884-95877058:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	642.9558715820312	2	642.956772	1283.89899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.849	1	20.849	20.349	21.349	0								0	0	0	0.4201	1	6535	6535		0.99688	0.99688	1				20725	10606	13199	13255	21036	21036					0.2683980538686228
KKKNKTKW	8	Unmodified	_KKKNKTKW_					0	0	0		ENST00000420058.1_2_7:102628891-102629017:+|nuORF	ENST00000420058.1_2_7:102628891-102629017:+|nuORF	ENST00000420058.1_2_7:102628891-102629017:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.8369750976562	2	530.834926	1059.6553	0.11781	6.2537E-05	3.2281	0.0017136	3.3459	0.0017761	530.8368852448691	16.399	0.14842	16.399	16.303	16.451	0					5	3	2	0	0	0	0.58597	1	4449	4449		50.025	19.521	1	461630			20726	9391	13200	13256	21037	21037					0.12785721222121538
KKKNPTPES	9	Unmodified	_KKKNPTPES_					0	0	0		nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19;nc|ENSG00000213390|Q14CB8-4|ARHGAP19;ENST00000487035.1_1_10:98985881-99016222:-|nuORF;ENST00000492211.5_1_10:98985881-99018422:-|nuORF	nc|ENSG00000213390|Q14CB8-6|ARHGAP19	nc|ENSG00000213390|Q14CB8-6|ARHGAP19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.79052734375	2	514.790381	1027.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.381	1	19.381	18.881	19.881	0								0	0	0	0.3304	1	6116	6116		29.15	3.6994	1				20727	7786	13201	13257	21038	21038					0.05352841471949432
KKKQAGSKK	9	Unmodified	_KKKQAGSKK_					0	0	0			REV__ENSG00000248712|ENST00000503566|CCDC153	REV__ENSG00000248712|ENST00000503566|CCDC153	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8250427246094	2	501.824558	1001.63456	-0.55823	-0.00028013	1.472	0.00073866	0.91373	0.00045853	501.82548563847365	11.879	2.6337	11.879	11.789	14.423	0					104	62	2	0	0	0	0.0059092	1	2370	2370		154.12	1.6478	1	35868000	+		20728	17715	13202	13258	21039	21039					0.13381130842469702
KKKQHSTT	8	Unmodified	_KKKQHSTT_					0	0	0			REV__nc|ENSG00000067141|Q92859-3|NEO1	REV__nc|ENSG00000067141|Q92859-3|NEO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2768859863281	2	479.277441	956.540328	0.026098	1.2508E-05	-0.38139	-0.00018279	-0.35529	-0.00017028	479.27687838168254	55.611	0.19846	55.611	55.513	55.712	0					17	12	2	0	0	0	0.78142	1	19244	19244		23.042	1.3402	1	54103	+		20729	13136	13203	13259	21040	21040					0.06031992020314192
KKKQITPS	8	Unmodified	_KKKQITPS_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.292724609375	2	465.292559	928.570566	-0.16808	-7.8208E-05	0.48587	0.00022607	0.31778	0.00014786	465.292690135155	11.283	0.11565	11.283	11.228	11.343	0					10	7	2	0	0	0	0.58597	1	2132	2132		51.335	1.8939	1	105000			20730	4290	13204	13260	21041	21041					0.10342350685516521
KKKQTNKK	8	Unmodified	_KKKQTNKK_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.82421875	2	501.824558	1001.63456	0.47799	0.00023987	-0.6551	-0.00032875	-0.17711	-8.8877E-05	501.8242677707969	11.641	0.45534	11.641	11.577	12.032	0					44	26	4	0	0	0	0.2428	1	2185	2185		148.04	0	1	3371200	+		20731	18877	13205	13261	21042	21042					0.13381130842458333
KKKRCAPKK	9	Unmodified	_KKKRCAPKK_					0	0	0			REV__ENSG00000188620|ENST00000357878|HMX3	REV__ENSG00000188620|ENST00000357878|HMX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.9009704589844	3	362.902461	1085.68555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.899	1	14.899	14.399	15.399	0								0	0	0	0.3693	1	3811	3811		19.997	1.7347	1		+		20732	17178	13206	13262	21043	21043					0.14613756615653983
KKKREMQK	8	Unmodified	_KKKREMQK_					0	0	0			REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|66|2|sense	REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|66|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3252563476562	2	538.323868	1074.63318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.849	1	12.849	12.349	13.349	0								0	0	0	1.7419	1	2579	2579		51.335	1.3109	1		+		20733	20829	13207	13263	21044	21044					0.09885173482052778
KKKRESMTD	9	Oxidation (M)	_KKKRESM(Oxidation (M))TD_		KKKRESM(1)TD		KKKRESM(82)TD	0	0	1			REV__tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	REV__tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.7962036132812	2	569.79788	1137.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.634	1	15.634	15.134	16.134	0								0	0	0	0.063485	1	3436	3436		82.305	8.05	1		+		20734	21680	13208	13264	21045	21045		787			0.017919652776527073
KKKRKCRK	8	Unmodified	_KKKRKCRK_					0	0	0			REV__BTC|p.R149C|1|0.28|ENSG00000174808|chr4:74748133-74748133|G/A|missense_variant	REV__BTC|p.R149C|1|0.28|ENSG00000174808|chr4:74748133-74748133|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.8579711914062	2	537.85567	1073.69679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.34	1	15.34	14.84	15.84	0								0	0	0	1.7419	1	3478	3478		33.516	6.8227	1		+		20735	12304	13209	13265	21046	21046					0.16288578709804824
KKKRSSASV	9	Unmodified	_KKKRSSASV_					0	0	0		ENSG00000163935|ENST00000394752|SFMBT1;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant	ENSG00000163935|ENST00000394752|SFMBT1	ENSG00000163935|ENST00000394752|SFMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.8075866699219	2	495.806365	989.598178	-0.38058	-0.00018869	3.9311	0.0019491	3.5505	0.0017604	495.80809774899717	40.009	0.14597	40.009	39.958	40.104	0					6	5	2	0	0	0	0.4966	1	15249	15249		32.812	0.85756	1	45195			20736	5629	13210	13266	21047	21047					0.10296253945762146
KKKSKDATEK	10	Unmodified	_KKKSKDATEK_					0	0	0		ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.2315979003906	3	388.231189	1161.67174	0.16129	6.2619E-05	0.58326	0.00022644	0.74456	0.00028906	388.23136355533194	16.787	0.25116	16.787	16.729	16.98	0					9	5	3	0	0	0	0.70274	1	4876	4876		21.686	2.5822	1	106810			20737	11052	13211	13267	21048	21048					0.09736757597534051
KKKSNIIQQ	9	Unmodified	_KKKSNIIQQ_					0	0	0			REV__ENSG00000186017|ENST00000452939|ZNF566	REV__ENSG00000186017|ENST00000452939|ZNF566	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8353881835938	2	543.835123	1085.65569	0.39578	0.00021524	0.34574	0.00018803	0.74152	0.00040326	543.8353830680186	22.472	0.14977	22.472	22.393	22.542	0					9	4	3	0	0	0	0.1424	1	6631	6631		69.628	7.5202	1	356470	+		20738	17062	13212	13268	21049	21049					0.11629096151318663
KKKSNIIQQ	9	Unmodified	_KKKSNIIQQ_					0	0	0			REV__ENSG00000186017|ENST00000452939|ZNF566	REV__ENSG00000186017|ENST00000452939|ZNF566	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8358764648438	2	543.835123	1085.65569	1.0886	0.00059203	0.082933	4.5102E-05	1.1715	0.00063713	543.8350903629013	22.536	0.15328	22.536	22.422	22.575	0					8	3	3	0	0	0	0.085655	1	6735	6735		82.75	16.321	1	179390	+		20739	17062	13212	13268	21050	21050					0.11629096151318663
KKKSSKQAE	9	Unmodified	_KKKSSKQAE_					0	0	0		L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|15|1|sense	L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|15|1|sense	L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|15|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.3046264648438	2	517.303655	1032.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.297	1	15.297	14.797	15.797	0								0	0	0	0.29356	1	3306	3306		36.447	0.82846	1				20740	11283	13213	13269	21051	21051					0.07776530363298662
KKKSTNNLK	9	Unmodified	_KKKSTNNLK_					0	0	0		nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.82763671875	2	530.827298	1059.64004	1.0936	0.00058051	0.012754	6.7701E-06	1.1063	0.00058728	530.8273949606094	13.923	0.096282	13.923	13.87	13.966	0					9	4	3	0	0	0	0.14578	1	2794	2794		52.937	12.159	1	272410			20741	11796	13214	13270	21052	21052					0.11260809634268298
KKKSTNNLK	9	Unmodified	_KKKSTNNLK_					0	0	0		nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.8284301757812	2	530.827298	1059.64004	1.192	0.00063272	0.94709	0.00050274	2.139	0.0011355	530.827639131311	13.989	0.081319	13.989	13.953	14.035	0					4	2	2	0	0	0	0.25761	1	2897	2897		47.657	1.6851	1	194510			20742	11796	13214	13270	21053	21053					0.11260809634268298
KKKTNSSTP	9	Unmodified	_KKKTNSSTP_					0	0	0		ENSG00000239642|ENST00000442687|MEIKIN	ENSG00000239642|ENST00000442687|MEIKIN	ENSG00000239642|ENST00000442687|MEIKIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7828063964844	2	495.782556	989.550559	3.4166	0.0016939	-3.7172	-0.0018429	-0.30055	-0.00014901	495.7807637331326	18.394	0.091782	18.394	18.337	18.429	0					5	3	2	0	0	0	0.39215	1	4793	4793		42.396	1.618	1	79592			20743	7922	13215	13271	21054	21054					0.055365549549037496
KKKWRKDS	8	Unmodified	_KKKWRKDS_					0	0	0		EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant	EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.324462890625	2	538.322183	1074.62981	3.374	0.0018163	0.5258	0.00028305	3.8998	0.0020994	538.3225455216768	13.038	0.29497	13.038	12.947	13.242	0					11	6	3	0	0	0	0.44433	1	2918	2918		65.803	7.0212	1	746140			20744	895	13216	13272	21055	21055					0.09548246699705487
KKLAKWTD	8	Unmodified	_KKLAKWTD_					0	0	0			REV__CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant	REV__CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2922668457031	2	495.292559	988.570566	0.74326	0.00036813	-2.9407	-0.0014565	-2.1975	-0.0010884	495.29062830458435	18.878	0.4312	18.878	18.846	19.277	0					18	11	3	0	0	0	0.49216	1	5615	5615		60.972	6.1956	1	1724500	+		20745	12361	13217	13273	21056	21056					0.07582350685515848
KKLAVHVDK	9	Unmodified	_KKLAVHVDK_					0	0	0			REV__ENSG00000255298|ENST00000641992|OR8G5	REV__ENSG00000255298|ENST00000641992|OR8G5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.55377197265625	3	346.553715	1036.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.697	1	10.697	10.197	11.197	0								0	0	0	0.37786	1	2081	2081		17.468	0.75062	1		+		20746	17754	13218	13274	21057	21057					0.12246014985225884
KKLDDIQK	8	Unmodified	_KKLDDIQK_					0	0	0			REV__nc|ENSG00000204842|Q99700-2|ATXN2	REV__nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2958679199219	2	494.295299	986.576045	-0.066988	-3.3112E-05	-0.3032	-0.00014987	-0.37019	-0.00018298	494.2951117097742	26.346	0.20554	26.346	26.243	26.448	0					14	6	3	0	0	0	0.22799	1	7979	7979		124.59	0	1	329820	+		20747	21192	13219	13275	21058	21058					0.08222029477326487
KKLEASSK	8	Unmodified	_KKLEASSK_					0	0	0			REV__ENST00000560591.5_1_15:67835673-67951132:+|nuORF	REV__ENST00000560591.5_1_15:67835673-67951132:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.7684020996094	2	445.768917	889.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.412	1	15.412	14.912	15.912	0								0	0	0	1.7419	1	3974	3974		21.96	4.5949	1		+		20748	14933	13220	13276	21059	21059					0.0741007141452883
KKLEDEAAR	9	Unmodified	_KKLEDEAAR_					0	0	0		ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;ITSN2|p.A1240Pfs*15|1|0.05|ENSG00000198399|chr2:24217995-24217996|-/AAGGG|frameshift_variant;ITSN2|p.F1478Qfs*12|1|0.3|ENSG00000198399|chr2:24209858-24209859|AA/-|frameshift_variant;ITSN2|p.A1583Pfs*86|1|0.25|ENSG00000198399|chr2:24205230-24205230|T/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2940063476562	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.68	1	20.68	20.18	21.18	0								0	0	0	0.051298	1	5816	5816		85.862	0.94631	1				20749	7555	13221	13277	21060	21060					0.04507939983614051
KKLEDMRRYS	10	Unmodified	_KKLEDMRRYS_					0	0	0		tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.239013671875	3	442.571328	1324.69215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.207	1	26.207	25.707	26.707	0								0	0	0	0.4201	1	9012	9012		16.007	0.67366	1				20750	22835	13222	13278	21061	21061					0.042796049857315666
KKLFAPTQK	9	Unmodified	_KKLFAPTQK_					0	0	0			REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.8282470703125	2	530.829309	1059.64407	-0.10775	-5.7195E-05	-2.1823	-0.0011584	-2.2901	-0.0012156	530.8282334880863	13.952	0.096619	13.952	13.899	13.995	0					10	4	3	0	0	0	0.19952	1	2939	2939		45.972	8.1607	1	302040	+		20751	16549	13223	13279	21062	21062					0.1166289912796401
KKLFDPNSK	9	Unmodified	_KKLFDPNSK_					0	0	0			REV__nc|ENSG00000133030|Q6WCQ1-3|MPRIP	REV__nc|ENSG00000133030|Q6WCQ1-3|MPRIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.5401611328125	3	359.541475	1075.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.169	1	12.169	11.669	12.669	0								0	0	0	0.31222	1	2529	2529		32.751	5.7032	1		+		20752	14691	13224	13280	21063	21063					0.06781718368642942
KKLFSAGV	8	Unmodified	_KKLFSAGV_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2630920410156	2	425.263271	848.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.825	1	18.825	18.325	19.325	0								0	0	0	1.7419	1	5846	5846		38.806	3.6054	1		+		20753	17233	13225	13281	21064	21064					0.08167294111046886
KKLICLLDE	9	Unmodified	_KKLICLLDE_					0	0	0			REV__TNFSF8|p.R92K|1|0.23|ENSG00000106952|chr9:114905863-114905863|C/T|missense_variant	REV__TNFSF8|p.R92K|1|0.23|ENSG00000106952|chr9:114905863-114905863|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.8804016113281	3	358.879099	1073.61547	1.4309	0.0005135	2.6946	0.00096705	4.1255	0.0014806	358.87998717182444	16.442	0.26643	16.442	16.363	16.63	0					12	5	3	0	0	0	0.5879	1	4728	4728		17.468	0	1	846820	+		20754	21656	13226	13282	21065	21065					0.08160413436530689
KKLIEDYEGK	10	Unmodified	_KKLIEDYEGK_					0	0	0		nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;FAM184A|p.L424Ffs*10|1|0.45|ENSG00000111879|chr6:119020038-119020039|-/A|frameshift_variant;nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.8390502929688	2	611.837528	1221.6605	-0.63322	-0.00038743	3.8398	0.0023493	3.2066	0.0019619	611.8400439038976	19.417	0.10687	19.417	19.349	19.456	0					5	3	2	0	0	0	0.71857	1	5264	5264		19.997	4.355	1	54295			20755	2704	13227	13283	21066	21066					0.05853935503409957
KKLKSGLTK	9	Unmodified	_KKLKSGLTK_					0	0	0			REV__OTUD7B|p.G523Afs*2|1|0.07|ENSG00000264522|chr1:149944821-149944821|C/-|frameshift_variant	REV__OTUD7B|p.G523Afs*2|1|0.07|ENSG00000264522|chr1:149944821-149944821|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.8368835449219	2	501.837134	1001.65972	-2.0909	-0.0010493	1.683	0.0008446	-0.40792	-0.00020471	501.8381163357047	14.263	0.046418	14.263	14.232	14.279	0					4	2	2	0	0	0	0.58342	1	2991	2991		16.473	0	1	25284	+		20756	17786	13228	13284	21067	21067					0.1589518564503578
KKLLIQMK	8	Unmodified	_KKLLIQMK_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.33026123046875	2	501.33063	1000.64671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.359	1	11.359	10.859	11.859	0								0	0	0	1.7419	1	2126	2126		4.3163	0	1				20757	7813	13229	13285	21068	21068					0.1464103126130567
KKLNHSAK	8	Unmodified	_KKLNHSAK_					0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2821350097656	2	463.282526	924.550499	0.76265	0.00035332	-1.6839	-0.00078013	-0.92128	-0.00042681	463.28191390799157	12.017	0.10653	12.017	11.921	12.028	0					6	2	3	0	0	0	0.49216	1	2451	2451		60.972	10.947	1	147550	+		20758	16053	13230	13286	21069	21069					0.0852059974556596
KKLNNKTKK	9	Unmodified	_KKLNNKTKK_					0	0	0			REV__ARHGAP12|p.K628N|1|0.15|ENSG00000165322|chr10:31812774-31812774|T/G|missense_variant	REV__ARHGAP12|p.K628N|1|0.15|ENSG00000165322|chr10:31812774-31812774|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.3612670898438	2	551.358765	1100.70298	4.5999	0.0025362	0.10464	5.7693E-05	4.7046	0.0025939	551.358366403967	25.389	0.23068	25.389	25.259	25.489	0					10	8	2	0	0	0	0.33044	1	7899	7899		47.657	1.7054	1	44897	+		20759	12200	13231	13287	21070	21070					0.15665375422327088
KKLNPIRGPS	10	Unmodified	_KKLNPIRGPS_					0	0	0			REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF	REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.3438110351562	2	555.343115	1108.67168	1.0506	0.00058346	0.24989	0.00013877	1.3005	0.00072223	555.343172720515	18.906	0.16749	18.906	18.846	19.014	0					5	3	2	0	0	0	0.41384	1	5761	5761		42.396	10.866	1	600150	+		20760	18277	13232	13288	21071	21071					0.12168802388237054
KKLQFAPQ	8	Unmodified	_KKLQFAPQ_					0	0	0			REV__ENSG00000132017|ENST00000254337|DCAF15	REV__ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2852478027344	2	480.287277	958.560001	-1.3853	-0.00066532	-2.5544	-0.0012269	-3.9397	-0.0018922	480.28601031536886	13.247	0.055269	13.247	13.202	13.258	0					6	2	3	0	0	0	0.68754	1	2713	2713		35.201	4.6971	1	90639	+		20761	14642	13233	13289	21072	21072					0.07906368031081001
KKLQIVQQE	9	Unmodified	_KKLQIVQQE_					0	0	0		nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;ENSG00000151065|ENST00000280665|DCP1B	nc|ENSG00000151065|Q8IZD4-2|DCP1B	nc|ENSG00000151065|Q8IZD4-2|DCP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.33544921875	2	557.334956	1112.65536	1.2251	0.00068279	-0.20402	-0.00011371	1.0211	0.00056908	557.3348734508085	32.076	0.16764	32.076	31.969	32.136	0					6	3	2	0	0	0	0.15163	1	12070	12070		60.972	0	1	248220			20762	4945	13234	13290	21073	21073					0.1035367643146401
KKLRVELE	8	Unmodified	_KKLRVELE_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8190612792969	2	507.818941	1013.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.326	1	13.326	12.826	13.826	0								0	0	0	1.7419	1	3219	3219		45.952	0	1		+		20763	14706	13235	13291	21074	21074					0.11706308748318861
KKLSDGTF	8	Unmodified	_KKLSDGTF_					0	0	0		ENSG00000204104|ENST00000373327|TRAF3IP1;nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	ENSG00000204104|ENST00000373327|TRAF3IP1	ENSG00000204104|ENST00000373327|TRAF3IP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.2476501464844	2	448.247818	894.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.911	1	22.911	22.411	23.411	0								0	0	0	1.7419	1	6553	6553		33.516	1.9858	1				20764	7672	13236	13292	21075	21075					0.02962096006149295
KKLTQSKFV	9	Unmodified	_KKLTQSKFV_					0	0	0		ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8343505859375	2	539.834591	1077.65463	0.26262	0.00014177	-0.82897	-0.00044751	-0.56635	-0.00030574	539.8338686659583	35.599	0.3046	35.599	35.406	35.711	0					17	8	3	0	0	0	0.46194	1	13336	13336		21.96	0	1	254330			20765	2910	13237	13293	21076	21076					0.11890881782437646
KKLWAYLTI	9	Unmodified	_KKLWAYLTI_					0	0	0		CON__Q9TRI1	CON__Q9TRI1	CON__Q9TRI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.2325744628906	3	379.233982	1134.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.098	1	39.098	38.598	39.598	0								0	0	0	0.3428	1	14873	14873		26.693	0.62953	1			+	20766	673	13238	13294	21077	21077					0.11816356304825604
KKMILMIGS	9	Unmodified	_KKMILMIGS_					0	0	0		ENST00000372771.4_1_1:40705712-40705763:+|nuORF	ENST00000372771.4_1_1:40705712-40705763:+|nuORF	ENST00000372771.4_1_1:40705712-40705763:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.8011169433594	2	510.800848	1019.58714	-0.0051084	-2.6094E-06	-1.9046	-0.00097285	-1.9097	-0.00097546	510.80023157672383	35.854	0.20293	35.854	35.7	35.903	0					11	5	3	0	0	0	0.51991	1	13455	13455		30.504	11.4	1	80936			20767	8983	13239	13295	21078	21078					0.07813392255616236
KKMKMVTGA	9	Oxidation (M)	_KKM(Oxidation (M))KMVTGA_		KKM(0.5)KM(0.5)VTGA		KKM(0)KM(0)VTGA	0	0	1		ENST00000491428.1_1_1:218458703-218475928:+|nuORF;ENSG00000067533|ENST00000366932|RRP15	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.281494140625	2	505.28028	1008.54601	2.9343	0.0014826	0.13153	6.6462E-05	3.0658	0.0015491	505.2802397948368	36.553	0.31786	36.553	36.395	36.713	0					15	6	3	0	0	0	0.1236	1	14226	14226		73.975	9.7675	2	1760900			20768	1409	13240	13296	21079	21079		64;65			0.04207631216149821
KKMKRGYF	8	Unmodified	_KKMKRGYF_					0	0	0		ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.3031616210938	2	529.302404	1056.59026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.479	1	32.479	31.979	32.979	0								0	0	0	1.7419	1	10838	10838		28.254	0	1				20769	4161	13241	13297	21080	21080					0.06422403424630829
KKMLGLKGNGG	11	Unmodified	_KKMLGLKGNGG_					0	0	0		nc|ENSG00000121964|Q4AE62-3|GTDC1;GTDC1|p.K303*|1|0.26|ENSG00000121964|chr2:143970731-143970732|-/A|frameshift_variant;GTDC1|p.F302Lfs*4|2|0.29|ENSG00000121964|chr2:143970732-143970732|A/-|frameshift_variant;ENST00000491448.5_1_2:144764747-144969145:-|nuORF;nc|ENSG00000121964|Q4AE62-6|GTDC1;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-4|GTDC1;GTDC1|p.R414Gfs*12|1|0.41|ENSG00000121964|chr2:143952035-143952035|T/-|frameshift_variant;nc|ENSG00000121964|Q4AE62-5|GTDC1;ENSG00000121964|ENST00000682281|GTDC1	nc|ENSG00000121964|Q4AE62-3|GTDC1	nc|ENSG00000121964|Q4AE62-3|GTDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.8248291015625	2	551.823701	1101.63285	1.4791	0.00081618	-0.40435	-0.00022313	1.0747	0.00059305	551.8235567143902	22.947	0.13593	22.947	22.879	23.015	0					9	4	3	0	0	0	0.30464	1	6574	6574		62.107	7.3311	1	110920			20770	3244	13242	13298	21081	21081					0.08609753762220862
KKMPVFKQ	8	Unmodified	_KKMPVFKQ_					0	0	0			REV__tr|U7SH81|U7SH81_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02192PE=4SV=1	REV__tr|U7SH81|U7SH81_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02192PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.3004150390625	2	503.29933	1004.58411	2.928	0.0014737	-0.72426	-0.00036452	2.2038	0.0011092	503.29898644306684	19.919	0.21795	19.919	19.859	20.077	0					6	4	2	0	0	0	0.52345	1	6249	6249		57.811	7.7867	1	3412400	+		20771	21701	13243	13299	21082	21082					0.08199885193118917
KKNIDLEKI	9	Unmodified	_KKNIDLEKI_					0	0	0			REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8375244140625	2	550.837331	1099.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.89	1	37.89	37.39	38.39	0								0	0	0	0.10319	1	14392	14392		70.816	1.1886	1		+		20772	22208	13244	13300	21083	21083					0.11426560574250288
KKNLAQEKK	9	Unmodified	_KKNLAQEKK_					0	0	0		WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;nc|ENSG00000171804|Q6ZQQ6|WDR87	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.835205078125	2	543.835123	1085.65569	-0.19391	-0.00010546	0.50103	0.00027248	0.30712	0.00016702	543.8352277887205	16.066	0.064877	16.066	16.031	16.096	0					4	2	2	0	0	0	0.13267	1	3784	3784		71.877	3.0313	1	141040			20773	6321	13245	13301	21084	21084					0.11629096151318663
KKNNIVQN	8	Unmodified	_KKNNIVQN_					0	0	0			REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2769775390625	2	479.277441	956.540328	0.076026	3.6437E-05	0.10101	4.8413E-05	0.17704	8.485E-05	479.2774606671298	48.767	0.58304	48.767	48.556	49.139	0					54	37	2	0	0	0	0.65276	1	15385	15385		40.573	10.069	1	75204	+		20774	22161	13246	13302	21085	21085					0.06031992020314192
KKNRGLYR	8	Unmodified	_KKNRGLYR_					0	0	0		ENST00000474481.1_1_1:1421456-1424590:+|nuORF;ENST00000485748.5_1_1:1420203-1425183:+|nuORF;ENSG00000215915|ENST00000378785|ATAD3C;nc|ENSG00000160072|Q5T9A4-3|ATAD3B;ENST00000472194.6_1_1:1413873-1431194:+|nuORF;ENSG00000160072|ENST00000673477|ATAD3B	ENST00000474481.1_1_1:1421456-1424590:+|nuORF	ENST00000474481.1_1_1:1421456-1424590:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.815673828125	2	517.814525	1033.6145	0.42253	0.00021879	2.1853	0.0011316	2.6078	0.0013504	518.3170337095627	32.182	0.14259	32.182	32.09	32.233	0					8	6	2	0	0	0	0.76283	1	10391	10391		25.45	2.4077	1	80281			20775	5338	13247	13303	21086	21086					0.09903379902516463
KKNTTGPASQ	10	Unmodified	_KKNTTGPASQ_					0	0	0			REV__ENST00000508970.1_1_2:79924974-80004158:+|nuORF	REV__ENST00000508970.1_1_2:79924974-80004158:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2785034179688	2	516.277638	1030.54072	1.4616	0.0007546	0.2605	0.00013449	1.7221	0.00088909	516.2776462233028	14.544	0.44332	14.544	14.45	14.893	0					14	9	3	0	0	0	0.14151	1	3808	3808		88.177	8.4643	1	2050200	+		20776	19857	13248	13304	21087	21087					0.026673669495039576
KKNWFTVR	8	Unmodified	_KKNWFTVR_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.809814453125	2	539.811451	1077.60835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.944	1	18.944	18.444	19.444	0								0	0	0	1.7419	1	5043	5043		24.203	4.206	1		+		20777	14640	13249	13305	21088	21088					0.07264861671001199
KKPDAPCTIYT	11	Carbamidomethyl (C)	_KKPDAPC(Carbamidomethyl (C))TIYT_	KKPDAPC(1)TIYT		KKPDAPC(55)TIYT		0	1	0			REV__ENST00000567092.1_1_16:58149929-58163019:-|nuORF	REV__ENST00000567092.1_1_16:58149929-58163019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	647.3308715820312	2	647.329013	1292.64347	2.8725	0.0018594	0.012299	7.9616E-06	2.8848	0.0018674	647.3290029946376	22.813	0.46664	22.813	22.555	23.022	0					34	9	5	0	0	0	0.37057	1	7605	7605		54.722	54.722	1	7014900	+		20778	13179	13250	13306	21089	21089	513				0.008856916259674108
KKPEDKKQ	8	Unmodified	_KKPEDKKQ_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515015.1_1_5:140038902-140040409:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2911376953125	2	500.792924	999.571294	-2.1176	-0.0010605	-0.56819	-0.00028455	-2.6858	-0.001345	501.29349074228736	15.261	0.21632	15.261	15.124	15.341	0					21	7	3	0	0	0	0.60719	1	3408	3408		47.916	5.5195	1	1121000			20779	2779	13251	13307	21090	21090					0.07149145334562945
KKPEDRPN	8	Unmodified	_KKPEDRPN_					0	0	0		ENSG00000055332|ENST00000233057|EIF2AK2;nc|ENSG00000055332|P19525-2|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2669677734375	2	492.267073	982.519593	-0.058038	-2.857E-05	0.553	0.00027222	0.49496	0.00024365	492.2669609124643	18.369	0.11734	18.369	18.309	18.427	0					4	2	2	0	0	0	0.66372	1	5637	5637		38.806	1.647	1	196440			20780	1280	13252	13308	21091	21091					0.027634016406636874
KKPKHCRQ	8	Unmodified	_KKPKHCRQ_					0	0	0			REV__ENSG00000145536|ENST00000274181|ADAMTS16	REV__ENSG00000145536|ENST00000274181|ADAMTS16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7948608398438	2	512.795278	1023.576	-0.106	-5.4358E-05	-0.47428	-0.00024321	-0.58028	-0.00029757	512.7950992956563	25.186	0.2997	25.186	25.046	25.346	0					22	9	3	0	0	0	0.75243	1	7778	7778		26.796	0.10319	1	489190	+		20781	15277	13253	13309	21092	21092					0.06515750996334191
KKPKKKEKKHK	11	Unmodified	_KKPKKKEKKHK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;ENST00000592488.2_1_19:2113067-2114219:-|nuORF	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	703.966064453125	2	703.969545	1405.92454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.784	1	42.784	42.284	43.284	0								0	0	0	0.45674	1	16187	16187		7.8045	2.2467	1				20782	1361	13254	13310	21093	21093					0.23781235118622135
KKPQKYKP	8	Unmodified	_KKPQKYKP_					0	0	0		GRIA2|p.S531Y|1|0.24|ENSG00000120251|chr4:157336495-157336495|C/A|missense_variant	GRIA2|p.S531Y|1|0.24|ENSG00000120251|chr4:157336495-157336495|C/A|missense_variant	GRIA2|p.S531Y|1|0.24|ENSG00000120251|chr4:157336495-157336495|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8166809082031	2	508.816202	1015.61785	-0.5388	-0.00027415	0.55313	0.00028144	0.014331	7.292E-06	508.8164272895572	30.936	0.92066	30.936	30.742	31.663	0					87	34	4	0	0	0	0.65276	1	10310	10310		40.573	6.4001	1	1599100			20783	11169	13255	13311	21094	21094					0.11066629956508223
KKPQRHSLP	9	Unmodified	_KKPQRHSLP_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;FGD6|p.S531Vfs*6|1|0.33|ENSG00000180263|chr12:95209693-95209693|T/-|frameshift_variant	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.8274536132812	2	545.827632	1089.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.276	1	41.276	40.776	41.776	0								0	0	0	0.37821	1	14566	14566		17.365	1.7232	1				20784	6797	13256	13312	21095	21095					0.09947649074001674
KKPRKCSLCH	10	Unmodified	_KKPRKCSLCH_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.3303833007812	2	600.328627	1198.6427	3.118	0.0018718	-0.23779	-0.00014275	2.8802	0.0017291	600.3283959538124	32.949	0.64289	32.949	32.84	33.483	0					33	13	5	0	0	0	0.41335	1	12480	12480		54.776	0	1	2688700			20785	6657	13257	13313	21096	21096					0.05132618495940733
KKPTLGFPLV	10	Unmodified	_KKPTLGFPLV_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.3460083007812	2	550.347335	1098.68012	1.283	0.00070611	-3.4863	-0.0019187	-2.2033	-0.0012126	550.3452248838213	17.216	0.10321	17.216	17.165	17.268	0					7	3	3	0	0	0	0.4287	1	4077	4077		25.574	0	1	105940	+		20786	14626	13258	13314	21097	21097					0.1347235630482828
KKQKNKSE	8	Unmodified	_KKQKNKSE_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.266845703125	2	495.290548	988.566543	3.4234	0.0016956	1.4202	0.00070341	4.8436	0.002399	495.2913881078098	20.671	0.1443	20.671	20.597	20.741	0					7	4	2	0	0	0	0.61938	1	5792	5792		45.952	0	1	113690			20787	5261	13259	13315	21098	21098					0.07180261191808768
KKQKSIIIK	9	Unmodified	_KKQKSIIIK_					0	0	0			REV__tr|U7STS9|U7STS9_FUSNURNApolymerasesigmafactor54DNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01555PE=4SV=1	REV__tr|U7STS9|U7STS9_FUSNURNApolymerasesigmafactor54DNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01555PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.5851135253906	3	362.585015	1084.73321	0.85018	0.00030826	-0.41614	-0.00015089	0.43404	0.00015737	362.5846844295183	15.141	0.10584	15.141	15.084	15.19	0					4	2	2	0	0	0	0.21263	1	3856	3856		60.118	1.872	1	63697	+		20788	21937	13260	13316	21099	21099					0.19423734087513367
KKQRTERE	8	Unmodified	_KKQRTERE_					0	0	0			REV__ENSG00000211455|ENST00000389032|STK38L	REV__ENSG00000211455|ENST00000389032|STK38L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.80419921875	2	537.804354	1073.59415	1.8916	0.0010173	-1.162	-0.0006249	0.72961	0.00039239	537.8037644292715	11.821	0.17559	11.821	11.693	11.868	0					14	5	3	0	0	0	0.6088	1	2496	2496		37.159	0	1	1158600	+		20789	17546	13261	13317	21100	21100					0.06030164452045028
KKQTNKKK	8	Unmodified	_KKQTNKKK_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.8247985839844	2	501.824558	1001.63456	-0.94183	-0.00047263	0.49083	0.00024631	-0.451	-0.00022632	501.824845220246	11.674	0.30097	11.674	11.618	11.919	0					25	15	3	0	0	0	0.241	1	2257	2257		115.49	2.0825	1	3513700	+		20790	18877	13262	13318	21101	21101					0.13381130842469702
KKQTNKKK	8	Unmodified	_KKQTNKKK_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8250732421875	2	501.824558	1001.63456	0.043938	2.2049E-05	0.41118	0.00020634	0.45512	0.00022839	501.8248670827492	11.914	2.102	11.914	11.804	13.906	0					93	50	5	0	0	0	0.23367	2	2530	2530;2697		120.62	0	1	17484000	+		20791	18877	13262	13318	21102;21103	21102					0.13381130842469702
KKQTNKKK	8	Unmodified	_KKQTNKKK_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8249206542969	2	501.824558	1001.63456	0.95994	0.00048172	-1.1116	-0.00055784	-0.15168	-7.6118E-05	501.8239702990795	11.938	2.1211	11.938	11.819	13.94	0					88	50	3	0	0	0	0.27242	1	2542	2542		143.89	0.77985	1	8683300	+		20792	18877	13262	13318	21104	21104					0.13381130842469702
KKQTNKKK	8	Unmodified	_KKQTNKKK_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.8243103027344	2	501.824558	1001.63456	0.14313	7.1826E-05	-0.20121	-0.00010097	-0.058077	-2.9145E-05	501.8244778406308	11.628	0.49098	11.628	11.586	12.077	0					38	28	2	0	0	0	0.25873	1	2207	2207		96.19	0	1	2799000	+		20793	18877	13262	13318	21105	21105					0.13381130842469702
KKQTNKKK	8	Unmodified	_KKQTNKKK_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8243713378906	2	501.824558	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.852	1	11.852	11.352	12.352	0								0	0	0	1.4132	1	2380	2380		152.47	0	1		+		20794	18877	13262	13318	21106	21106					0.13381130842469702
KKQVTQHKL	9	Unmodified	_KKQVTQHKL_					0	0	0			REV__ENST00000370801.7_1_1:78098627-78098666:-|nuORF	REV__ENST00000370801.7_1_1:78098627-78098666:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.3427734375	2	555.343115	1108.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.97	1	18.97	18.47	19.47	0								0	0	0	0.30009	1	5916	5916		27.882	12.24	1		+		20795	18640	13263	13319	21107	21107					0.12168802388214317
KKRDEYYK	8	Unmodified	_KKRDEYYK_					0	0	0		tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3038330078125	2	565.303655	1128.59276	0.13699	7.7441E-05	-0.1796	-0.00010153	-0.042615	-2.4091E-05	565.3035214447045	19.521	0.11193	19.521	19.484	19.596	0					5	3	2	0	0	0	0.59773	1	5315	5315		38.806	0	1	111000			20796	22772	13264	13320	21108	21108					0.03360530363283942
KKRDRDRV	8	Unmodified	_KKRDRDRV_					0	0	0		ENST00000466133.1_1_3:159818637-159819075:+|nuORF;BRD7|p.H472Afs*14|1|0.32|ENSG00000166164|chr16:50323616-50323617|-/C|frameshift_variant;ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENST00000466133.1_1_3:159818637-159819075:+|nuORF	ENST00000466133.1_1_3:159818637-159819075:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8218994140625	2	536.820338	1071.62612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.462	1	19.462	18.962	19.962	0								0	0	0	1.7419	1	5289	5289		34.173	16.808	1				20797	320	13265	13321	21109	21109					0.09317576925832327
KKREELKGN	9	Unmodified	_KKREELKGN_					0	0	0		tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.3244018554688	2	551.32238	1100.63021	3.7121	0.0020466	0.36878	0.00020332	4.0809	0.0022499	551.3226988266723	44.334	0.22274	44.334	44.206	44.429	0					16	9	2	0	0	0	0.54267	1	17791	17791		27.882	1.1893	1	125460			20798	22711	13266	13322	21110	21110					0.0839162162892535
KKRGFVQVS	9	Unmodified	_KKRGFVQVS_					0	0	0			REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8169555664062	2	524.816733	1047.61891	0.094172	4.9423E-05	-0.062647	-3.2878E-05	0.031524	1.6545E-05	524.816717863083	18.378	0.44046	18.378	18.282	18.723	0					15	10	2	0	0	0	0.056004	1	5353	5353		76.774	0	1	2898300	+		20799	13757	13267	13323	21111	21111					0.09700844325402613
KKRGFVQVS	9	Unmodified	_KKRGFVQVS_					0	0	0			REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8169555664062	2	524.816733	1047.61891	0.42245	0.00022171	-1.0062	-0.00052807	-0.58376	-0.00030637	524.8164079298574	18.06	0.17199	18.06	17.978	18.15	0					8	5	2	0	0	0	0.18416	1	4660	4660		47.657	0	1	185770	+		20800	13757	13267	13323	21112	21112					0.09700844325402613
KKRGFVQVS	9	Unmodified	_KKRGFVQVS_					0	0	0			REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.2135314941406	3	350.213581	1047.61891	-0.074699	-2.6161E-05	-0.10434	-3.6541E-05	-0.17904	-6.2702E-05	350.21355246640053	18.11	0.2073	18.11	18.002	18.209	0					7	4	2	0	0	0	0.46194	1	4673	4673		36.447	4.9169	1	212250	+		20801	13757	13267	13323	21113	21113					0.09700844325402613
KKRGFVQVS	9	Unmodified	_KKRGFVQVS_					0	0	0			REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	REV__ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.8167114257812	2	524.816733	1047.61891	-1.2557	-0.00065902	1.9966	0.0010479	0.74092	0.00038885	524.8176635590313	18.144	0.15942	18.144	18.034	18.194	0					6	3	2	0	0	0	0.04067	1	4665	4665		82.241	18.934	1	286130	+		20802	13757	13267	13323	21114	21114					0.09700844325402613
KKRKHISGHL	10	Unmodified	_KKRKHISGHL_					0	0	0		ENST00000393791.7_1_12:57866252-57866303:-|nuORF	ENST00000393791.7_1_12:57866252-57866303:-|nuORF	ENST00000393791.7_1_12:57866252-57866303:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.3767700195312	2	602.375281	1202.73601	3.0706	0.0018496	-0.71542	-0.00043095	2.3551	0.0014187	602.3748429030309	32.648	0.50682	32.648	32.54	33.046	0					24	10	4	0	0	0	0.44292	1	12322	12322		47.657	0	1	2889000			20803	9165	13268	13324	21115	21115					0.14275002265048897
KKRKRCIW	8	Unmodified	_KKRKRCIW_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;ENST00000490880.5_1_2:231065532-231076254:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110;nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3446044921875	2	559.342395	1116.67024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.615	1	11.615	11.115	12.115	0								0	0	0	1.7419	1	2274	2274		1.4648	0	1				20804	4030	13269	13325	21116	21116					0.11656889818459604
KKRTTKEK	8	Unmodified	_KKRTTKEK_					0	0	0			REV__ENSG00000224389|ENST00000435363|C4B	REV__ENSG00000224389|ENST00000435363|C4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7987365722656	2	509.822015	1017.62948	1.1793	0.00060122	-1.0517	-0.00053619	0.12755	6.5028E-05	509.8214321561482	11.52	0.088432	11.52	11.465	11.553	0					4	2	2	0	0	0	0.78142	1	2387	2387		23.042	0	1	23916	+		20805	17623	13270	13326	21117	21117					0.12136826979838133
KKRVFGYRM	9	Unmodified	_KKRVFGYRM_					0	0	0			REV__nc|ENSG00000256040|Q5QFB9|PAPPA-AS1	REV__nc|ENSG00000256040|Q5QFB9|PAPPA-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.5628356933594	3	395.562216	1183.66482	-1.275	-0.00050434	2.6089	0.001032	1.3339	0.00052764	395.56325798582304	18.389	0.086166	18.389	18.332	18.418	0					5	3	2	0	0	0	0.60749	1	4800	4800		20.947	0.10978	1	90908	+		20806	21235	13271	13327	21118	21118					0.08033166235986755
KKSCQLCTEDK	11	Unmodified	_KKSCQLCTEDK_					0	0	0		ENSG00000251154|ENST00000509356|PTTG1IP2	ENSG00000251154|ENST00000509356|PTTG1IP2	ENSG00000251154|ENST00000509356|PTTG1IP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	641.8084716796875	2	641.81013	1281.60571	-0.47234	-0.00030316	-2.1187	-0.0013598	-2.591	-0.0016629	641.808912442628	29.358	0.146	29.358	29.266	29.412	0					5	3	2	0	0	0	0.72624	1	10874	10874		25.126	2.5463	1	50408			20807	7992	13272	13328	21119	21119					-0.023831426311517134
KKSDIIRD	8	Unmodified	_KKSDIIRD_					0	0	0			REV__ENSG00000154734|ENST00000284984|ADAMTS1	REV__ENSG00000154734|ENST00000284984|ADAMTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.78509521484375	2	487.785099	973.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.743	1	15.743	15.243	16.243	0								0	0	0	1.7419	1	4130	4130		24.203	3.2558	1		+		20808	15573	13273	13329	21120	21120					0.0678085881751258
KKSFSIKK	8	Unmodified	_KKSFSIKK_					0	0	0			REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.3109436035156	2	483.310752	964.606951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.336	1	33.336	32.836	33.836	0								0	0	0	1.7419	1	10829	10829		56.721	15.943	1		+		20809	15901	13274	13330	21121	21121					0.1232322758223745
KKSFSIKK	8	Unmodified	_KKSFSIKK_					0	0	0			REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.310546875	2	483.310752	964.606951	0.32653	0.00015782	0.012482	6.0325E-06	0.33901	0.00016385	483.3112141679042	33.601	0.21668	33.601	33.508	33.725	0					10	5	3	0	0	0	0.42778	1	12430	12430		67.494	10.773	1	357610	+		20810	15901	13274	13330	21122	21122					0.1232322758223745
KKSFSIKK	8	Unmodified	_KKSFSIKK_					0	0	0			REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.3103942871094	2	483.310752	964.606951	-0.099103	-4.7898E-05	0.017182	8.3042E-06	-0.081921	-3.9594E-05	483.3107919762356	33.582	0.28972	33.582	33.448	33.738	0					11	7	2	0	0	0	0.6088	1	12853	12853		47.657	1.7054	1	557360	+		20811	15901	13274	13330	21123	21123					0.1232322758223745
KKSFSIKK	8	Unmodified	_KKSFSIKK_					0	0	0			REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.31085205078125	2	483.310752	964.606951	-0.59955	-0.00028977	0.13617	6.5814E-05	-0.46337	-0.00022395	483.31103933729474	33.558	0.26688	33.558	33.449	33.716	0					9	5	2	0	0	0	0.66095	1	12780	12780		39.253	8.7492	1	482430	+		20812	15901	13274	13330	21124	21124					0.1232322758223745
KKSGAQKKK	9	Unmodified	_KKSGAQKKK_					0	0	0		ENSG00000248712|ENST00000503566|CCDC153;ENST00000375140.7_1_11:119064239-119066706:-|nuORF	ENSG00000248712|ENST00000503566|CCDC153	ENSG00000248712|ENST00000503566|CCDC153	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8244323730469	2	501.824558	1001.63456	-0.55823	-0.00028013	1.472	0.00073866	0.91373	0.00045853	501.82548563847365	11.879	2.6337	11.879	11.789	14.423	0					104	62	2	0	0	0	0.13267	2	2685	2685;3292		71.877	3.3972	1	35868000			20813	7978	13275	13331	21125;21126	21125					0.13381130842469702
KKSKEKYIDQ	10	Unmodified	_KKSKEKYIDQ_					0	0	0		nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	633.8573608398438	2	633.856252	1265.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.807	1	32.807	32.307	33.307	0								0	0	0	0.4201	1	12500	12500		22.58	1.7425	1				20814	11726	13276	13332	21127	21127					0.0757302676904601
KKSKFAEA	8	Unmodified	_KKSKFAEA_					0	0	0			REV__TNMD|p.A61Sfs*3|1|0.3|ENSG00000000005|chrX:100585356-100585357|-/A|frameshift_variant	REV__TNMD|p.A61Sfs*3|1|0.3|ENSG00000000005|chrX:100585356-100585357|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.76336669921875	2	454.763635	907.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.933	1	35.933	35.433	36.433	0								0	0	0	1.7419	1	13514	13514		40.778	5.1599	1		+		20815	12807	13277	13333	21128	21128					0.055260887600866226
KKSKKNSRCWH	11	Unmodified	_KKSKKNSRCWH_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	701.3832397460938	2	701.380237	1400.74592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.463	1	25.463	24.963	25.963	0								0	0	0	0.45674	1	9040	9040		19.263	3.9296	1				20816	11304	13278	13334	21129	21129					0.061578222080925116
KKSLMLVKK	9	Unmodified	_KKSLMLVKK_					0	0	0		ENST00000361924.6_1_3:37370567-37376559:+|nuORF	ENST00000361924.6_1_3:37370567-37376559:+|nuORF	ENST00000361924.6_1_3:37370567-37376559:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.9070129394531	3	358.9071	1073.69947	0.29967	0.00010755	-0.51552	-0.00018502	-0.21586	-7.7472E-05	358.9069538984638	15.543	0.16614	15.543	15.434	15.6	0					5	3	2	0	0	0	0.54267	1	4281	4281		35.152	8.4591	1	390110			20817	8885	13279	13335	21130	21130					0.16556989324089955
KKSLQHNEK	9	Unmodified	_KKSLQHNEK_					0	0	0			REV__CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant	REV__CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.315185546875	2	556.314554	1110.61456	1.4204	0.00079018	-1.0062	-0.00055975	0.4142	0.00023042	556.3141040290437	16.105	0.079578	16.105	16.057	16.136	0					5	3	2	0	0	0	0.22837	1	3617	3617		58.23	21.071	1	87317	+		20818	12370	13280	13336	21131	21131					0.06367335111826833
KKSLQHNEK	9	Unmodified	_KKSLQHNEK_					0	0	0			REV__CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant	REV__CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.314697265625	2	556.314554	1110.61456	1.1296	0.00062843	-0.69775	-0.00038817	0.43188	0.00024026	556.3141709487617	16.158	0.11684	16.158	16.124	16.241	0					5	3	2	0	0	0	0.17854	1	3783	3783		64.207	0	1	158160	+		20819	12370	13280	13336	21132	21132					0.06367335111826833
KKSMRSIY	8	Unmodified	_KKSMRSIY_					0	0	0			REV__ENST00000368654.7_1_10:129914037-129921160:-|nuORF	REV__ENST00000368654.7_1_10:129914037-129921160:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.19183349609375	3	338.191788	1011.55354	0.51399	0.00017383	-0.86911	-0.00029392	-0.35512	-0.0001201	338.19164475337357	21.388	0.22063	21.388	21.298	21.518	0					11	5	3	0	0	0	0.8006	1	6797	6797		16.473	0	1	364450	+		20820	18609	13281	13337	21133	21133					0.048221068080579244
KKSQKKKQ	8	Unmodified	_KKSQKKKQ_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8244934082031	2	501.824558	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.199	1	12.199	11.699	12.699	0								0	0	0	1.7419	1	2543	2543		101.6	0	1				20821	6597	13282	13338	21134	21134					0.13381130842469702
KKSRSTIQNP	10	Unmodified	_KKSRSTIQNP_					0	0	0		ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.8338623046875	2	579.833111	1157.65167	3.2508	0.0018849	-0.96795	-0.00056125	2.2829	0.0013237	579.8324867856259	10.841	0.056599	10.841	10.804	10.86	0					9	3	3	0	0	0	0.030824	1	2058	2058		75.043	0	1	407400			20822	5458	13283	13339	21135	21135					0.07915006657617596
KKSSHSVKK	9	Unmodified	_KKSSHSVKK_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.814697265625	2	514.81419	1027.61383	1.6003	0.00082383	-0.41603	-0.00021418	1.1842	0.00060965	514.8139362385689	13.323	0.20629	13.323	13.2	13.406	0					7	5	2	0	0	0	0.07136	1	2999	2999		87.696	8.2454	1	213410	+		20823	14163	13284	13340	21136	21136					0.10112540462819197
KKSSHSVKK	9	Unmodified	_KKSSHSVKK_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.814453125	2	514.81419	1027.61383	1.1752	0.00060503	-1.1915	-0.00061343	-0.016316	-8.3999E-06	514.8136736929181	13.306	1.7236	13.306	13.151	14.875	0					86	44	5	0	0	0	0.28897	1	3135	3135		51.193	3.5354	1	37230000	+		20824	14163	13284	13340	21137	21137					0.10112540462819197
KKSSHSVKK	9	Unmodified	_KKSSHSVKK_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.8141479492188	2	514.81419	1027.61383	0.74268	0.00038234	-0.96894	-0.00049882	-0.22626	-0.00011648	514.8137774186528	13.305	1.2805	13.305	13.112	14.393	0					49	27	5	0	0	0	0.07136	1	3173	3173		87.696	10.922	1	35394000	+		20825	14163	13284	13340	21138	21138					0.10112540462819197
KKSSHSVKK	9	Unmodified	_KKSSHSVKK_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.8143310546875	2	514.81419	1027.61383	1.4889	0.0007665	-0.57094	-0.00029393	0.91794	0.00047257	514.8138401017101	13.249	0.91424	13.249	13.095	14.01	0					40	19	5	0	0	0	0.10915	1	3016	3016		77.318	6.919	1	9846600	+		20826	14163	13284	13340	21139	21139					0.10112540462819197
KKSYKSFEK	9	Unmodified	_KKSYKSFEK_					0	0	0		ENST00000493756.1_1_1:40997452-41013129:+|nuORF;ENSG00000117010|ENST00000372699|ZNF684	ENST00000493756.1_1_1:40997452-41013129:+|nuORF	ENST00000493756.1_1_1:40997452-41013129:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	382.2163391113281	3	382.21688	1143.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.081	1	34.081	33.581	34.581	0								0	0	0	0.30009	1	11479	11479		35.152	2.3396	1				20827	3017	13285	13341	21140	21140					0.0627398754013484
KKTAGEEKR	9	Unmodified	_KKTAGEEKR_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.8016357421875	2	523.80128	1045.58801	0.091302	4.7824E-05	0.20837	0.00010915	0.29967	0.00015697	523.8016136038739	12.54	0.25242	12.54	12.434	12.686	0					18	8	4	0	0	0	0.1115	1	2647	2647		76.774	4.8967	1	399850	+		20828	17156	13286	13342	21141	21141					0.06703646220512383
KKTAHNSEA	9	Unmodified	_KKTAHNSEA_					0	0	0		nc|ENSG00000156531|Q8IWS0-2|PHF6;nc|ENSG00000156531|Q8IWS0-5|PHF6;ENSG00000156531|ENST00000370803|PHF6	nc|ENSG00000156531|Q8IWS0-2|PHF6	nc|ENSG00000156531|Q8IWS0-2|PHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2572021484375	2	493.256705	984.498858	0.77702	0.00038327	0.43748	0.00021579	1.2145	0.00059906	493.25704212492417	11.885	0.12872	11.885	11.791	11.92	0					8	4	3	0	0	0	0.56424	1	2367	2367		25.574	2.0514	1	507020			20829	5180	13287	13343	21142	21142					0.0059881126099980975
KKTCGNKSSV	10	Unmodified	_KKTCGNKSSV_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2805786132812	2	526.281866	1050.54918	0.22328	0.00011751	-2.412	-0.0012694	-2.1887	-0.0011519	526.2808026112375	18.81	0.63593	18.81	18.677	19.313	0					19	13	2	0	0	0	0.64162	1	5852	5852		29.17	0.91578	1	492960			20830	5373	13288	13344	21143	21143					0.025925975945028767
KKTDRNGKT	9	Unmodified	_KKTDRNGKT_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|74|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|74|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3010864257812	2	524.298904	1046.58326	1.6263	0.00085267	-1.7409	-0.00091277	-0.11463	-6.0101E-05	524.2980437350237	14.21	0.52051	14.21	14.088	14.609	0					20	10	3	0	0	0	0.27123	1	3491	3491		37.812	0	1	1315800	+		20831	20823	13289	13345	21144	21144					0.06182762077764892
KKTGKLISK	9	Unmodified	_KKTGKLISK_					0	0	0			REV__TMEM72|p.P196H|1|0.09|ENSG00000187783|chr10:44934893-44934893|C/A|missense_variant	REV__TMEM72|p.P196H|1|0.09|ENSG00000187783|chr10:44934893-44934893|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.89349365234375	3	334.893848	1001.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.229	1	14.229	13.729	14.729	0								0	0	0	0.37517	1	3042	3042		18.262	8.5564	1		+		20832	17137	13290	13346	21145	21145					0.1589518564503578
KKTGNSSPSQ	10	Unmodified	_KKTGNSSPSQ_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2666625976562	2	517.26727	1032.51999	-0.46697	-0.00024155	-0.48186	-0.00024925	-0.94882	-0.0004908	517.266967530458	14.533	0.24244	14.533	14.437	14.68	0					10	5	3	0	0	0	0.44601	1	3797	3797		51.193	1.7511	1	3255100	+		20833	14152	13291	13347	21146	21146					0.005027765698514486
KKTGVQWP	8	Unmodified	_KKTGVQWP_					0	0	0		ENST00000589829.5_1_18:11905221-11905871:-|nuORF	ENST00000589829.5_1_18:11905221-11905871:-|nuORF	ENST00000589829.5_1_18:11905221-11905871:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2730712890625	2	472.271627	942.528701	2.4451	0.0011548	0.48089	0.00022711	2.926	0.0013819	472.27188361567534	18.052	0.45402	18.052	17.8	18.254	0					21	9	3	0	0	0	0.44433	1	5338	5338		65.803	5.5092	1	6062000			20834	10940	13292	13348	21147	21147					0.05513794996988963
KKTISYQG	8	Unmodified	_KKTISYQG_					0	0	0		ENSG00000255713|ENST00000545221|OR4D2	ENSG00000255713|ENST00000545221|OR4D2	ENSG00000255713|ENST00000545221|OR4D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.7608642578125	2	462.761092	923.507631	0.11275	5.2175E-05	-1.0464	-0.00048422	-0.93362	-0.00043204	462.76055701417476	16.579	0.11234	16.579	16.503	16.616	0					5	3	2	0	0	0	0.60719	1	3795	3795		47.916	0	1	179690			20835	8022	13293	13349	21148	21148					0.04281784897477792
KKTKNSDIKV	10	Unmodified	_KKTKNSDIKV_					0	0	0		tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.853271484375	2	580.853512	1159.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.871	1	15.871	15.371	16.371	0								0	0	0	0.30854	1	4279	4279		49.536	0	1				20836	23004	13294	13350	21149	21149					0.1190134797718656
KKTKTKQQQ	9	Unmodified	_KKTKTKQQQ_					0	0	0		ENST00000455332.6_1_11:119227426-119227513:-|nuORF	ENST00000455332.6_1_11:119227426-119227513:-|nuORF	ENST00000455332.6_1_11:119227426-119227513:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3381958007812	2	559.33803	1116.66151	1.7739	0.0009922	-0.74566	-0.00041707	1.0282	0.00057512	559.3376992429254	11.821	0.137	11.821	11.693	11.83	0					9	4	3	0	0	0	0.085655	1	2510	2510		82.75	7.7072	1	182250			20837	9679	13295	13351	21150	21150					0.10784194662983282
KKTLSWAGPG	10	Unmodified	_KKTLSWAGPG_					0	0	0		ENST00000257940.6_1_12:56512934-56514437:+|nuORF	ENST00000257940.6_1_12:56512934-56514437:+|nuORF	ENST00000257940.6_1_12:56512934-56514437:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7935791015625	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.339	1	15.339	14.839	15.839	0								0	0	0	0.19992	1	3939	3939		64.207	3.9133	1				20838	8272	13296	13352	21151	21151					0.056334491971938405
KKTPWGKRG	9	Unmodified	_KKTPWGKRG_					0	0	0		ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000487574.1_1_2:113953766-113955491:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.317626953125	2	529.3169	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.521	1	32.521	32.021	33.021	0								0	0	0	0.3119	1	11318	11318		32.812	0	1				20839	3424	13297	13353	21152	21152					0.09320264045277327
KKTSLEKN	8	Unmodified	_KKTSLEKN_					0	0	0			REV__ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant	REV__ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.28057861328125	2	474.279649	946.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.856	1	38.856	38.356	39.356	0								0	0	0	1.7419	1	15260	15260		37.159	1.9584	1		+		20840	13410	13298	13354	21153	21153					0.06933456443221075
KKTVESKE	8	Unmodified	_KKTVESKE_					0	0	0		ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant;ARMC2|p.L815*|1|0.05|ENSG00000118690|chr6:108965134-108965134|T/-|frameshift_variant;ENSG00000118690|ENST00000392644|ARMC2	ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant	ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7713623046875	2	474.771657	947.528761	-1.5822	-0.00075121	1.0118	0.00048038	-0.57042	-0.00027082	474.77217308285117	17.249	0.11657	17.249	17.168	17.284	0					8	3	3	0	0	0	0.39125	1	4293	4293		71.877	3.0906	1	388090			20841	225	13299	13355	21154	21154					0.05289750206327426
KKTVESKE	8	Unmodified	_KKTVESKE_					0	0	0		ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant;ARMC2|p.L815*|1|0.05|ENSG00000118690|chr6:108965134-108965134|T/-|frameshift_variant;ENSG00000118690|ENST00000392644|ARMC2	ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant	ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7713623046875	2	474.771657	947.528761	0.71746	0.00034063	-1.1842	-0.00056224	-0.46678	-0.00022161	474.7710959010341	17.472	0.16814	17.472	17.363	17.531	0					10	3	4	0	0	0	0.24328	1	5056	5056		113.41	14.782	1	3618000			20842	225	13299	13355	21155	21155					0.05289750206327426
KKTVSKALA	9	Unmodified	_KKTVSKALA_					0	0	0		FAM133A|p.G54V|1|0.12|ENSG00000179083|chrX:93709580-93709580|G/T|missense_variant	FAM133A|p.G54V|1|0.12|ENSG00000179083|chrX:93709580-93709580|G/T|missense_variant	FAM133A|p.G54V|1|0.12|ENSG00000179083|chrX:93709580-93709580|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.3079528808594	2	473.30821	944.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.576	1	16.576	16.076	17.076	0								0	0	0	0.1836	1	4007	4007		53.351	8.9743	1				20843	11126	13300	13356	21156	21156					0.1273492371960856
KKVEIEKLI	9	Unmodified	_KKVEIEKLI_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3585815429688	2	550.357899	1098.70125	1.1534	0.0006348	0.36873	0.00020293	1.5222	0.00083773	550.3580027164533	26.044	0.22947	26.044	25.95	26.179	0					9	5	3	0	0	0	0.50858	1	8322	8322		31.53	2.3598	1	82363	+		20844	13536	13301	13357	21157	21157					0.15584321613710017
KKVGAKAAQQ	10	Unmodified	_KKVGAKAAQQ_					0	0	0		ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6;ENST00000432853.1_1_2:132592224-132593771:-|nuORF;RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant	ENSG00000196642|ENST00000311502|RABL6	ENSG00000196642|ENST00000311502|RABL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.8143920898438	2	514.81419	1027.61383	-0.15338	-7.896E-05	0.78908	0.00040623	0.6357	0.00032727	514.8145488383827	13.112	0.11527	13.112	13.019	13.135	0					10	6	2	0	0	0	0.44469	1	2665	2665		51.335	5.3632	1	52506			20845	7388	13302	13358	21158	21158					0.1011254046279646
KKVHSTIQK	9	Unmodified	_KKVHSTIQK_					0	0	0		ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	ENSG00000068784|ENST00000263736|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.8298950195312	2	534.82984	1067.64513	1.1819	0.0006321	-0.59256	-0.00031692	0.58931	0.00031518	534.8295266482712	18.216	0.47206	18.216	17.955	18.427	0					25	9	4	0	0	0	0.085655	1	5494	5494		82.75	0.50997	1	2345200			20846	1426	13303	13359	21159	21159					0.11401113496890503
KKVHSTIQK	9	Unmodified	_KKVHSTIQK_					0	0	0		ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	ENSG00000068784|ENST00000263736|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.8310546875	2	534.82984	1067.64513	2.0986	0.0011224	-0.70358	-0.0003763	1.3951	0.00074612	534.8294539126133	18.026	0.38379	18.026	17.751	18.135	0					20	8	3	0	0	0	0.056004	1	4586	4586		93.143	7.9824	1	502280			20847	1426	13303	13359	21160	21160					0.11401113496890503
KKVKCRKAD	9	Unmodified	_KKVKCRKAD_					0	0	0		ENSG00000221946|ENST00000270310|FXYD7	ENSG00000221946|ENST00000270310|FXYD7	ENSG00000221946|ENST00000270310|FXYD7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3246459960938	2	538.323868	1074.63318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.85	1	12.85	12.35	13.35	0								0	0	0	0.10121	1	2523	2523		71.296	17.944	1				20848	7850	13304	13360	21161	21161					0.09885173482052778
KKVKLISMK	9	Unmodified	_KKVKLISMK_					0	0	0			REV__ENST00000550125.5_1_12:49399131-49412528:-|nuORF	REV__ENST00000550125.5_1_12:49399131-49412528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.90728759765625	3	358.9071	1073.69947	-0.063282	-2.2712E-05	0.49866	0.00017897	0.43537	0.00015626	358.9072419899559	15.468	0.098962	15.468	15.414	15.513	0					6	2	3	0	0	0	0.18605	1	4091	4091		69.628	0	1	466800	+		20849	20192	13305	13361	21162	21162					0.16556989324112692
KKVKSREK	8	Unmodified	_KKVKSREK_					0	0	0		nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8247375488281	2	501.824558	1001.63456	0.043938	2.2049E-05	0.41118	0.00020634	0.45512	0.00022839	501.8248670827492	11.914	2.102	11.914	11.804	13.906	0					93	50	5	0	0	0	0.49216	1	3049	3049		60.972	4.2509	1	17484000			20850	2849	13306	13362	21163	21163					0.13381130842469702
KKVLSVEGP	9	Unmodified	_KKVLSVEGP_					0	0	0		CON__Q2HJF0	CON__Q2HJF0	CON__Q2HJF0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.79010009765625	2	478.792392	955.570232	-0.022484	-1.0765E-05	-1.2445	-0.00059587	-1.267	-0.00060663	478.791414732191	17.69	0.63025	17.69	17.579	18.209	0					30	18	4	0	0	0	0.39215	1	4415	4415		42.396	8.2236	1	291060		+	20851	653	13307	13363	21164	21164					0.09066930965661868
KKVPDVKE	8	Unmodified	_KKVPDVKE_					0	0	0		nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	nc|ENSG00000102387|Q5H9L4-3|TAF7L	nc|ENSG00000102387|Q5H9L4-3|TAF7L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7845764160156	2	471.784567	941.554582	-0.77242	-0.00036442	1.1159	0.00052648	0.34351	0.00016206	471.78510966317674	17.727	0.37012	17.727	17.466	17.836	0					15	7	3	0	0	0	0.54629	1	5302	5302		55.504	0.72789	1	626280			20852	2171	13308	13364	21165	21165					0.0814664444861819
KKVPVTKSQP	10	Unmodified	_KKVPVTKSQP_					0	0	0		ENST00000436970.5_1_16:87993584-88008722:+|nuORF	ENST00000436970.5_1_16:87993584-88008722:+|nuORF	ENST00000436970.5_1_16:87993584-88008722:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.3453369140625	2	556.345323	1110.67609	0.11581	6.443E-05	1.289	0.00071713	1.4048	0.00078156	556.3458400526717	14.356	0.16101	14.356	14.252	14.413	0					13	6	3	0	0	0	0.19797	1	3095	3095		79.713	1.4488	1	147220			20853	9536	13309	13365	21166	21166					0.12518266811161993
KKVSAMFHLGA	11	Unmodified	_KKVSAMFHLGA_					0	0	0			REV__nc|ENSG00000197603|Q9H799|CPLANE1	REV__nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.8289794921875	2	594.831526	1187.6485	-1.8104	-0.0010769	-2.6309	-0.0015649	-4.4413	-0.0026418	594.8299249057383	13.984	0.14352	13.984	13.929	14.072	0					7	5	2	0	0	0	0.3077	1	2889	2889		52.937	0	1	190190	+		20854	17347	13310	13366	21167	21167					0.06218040279259185
KKVSHSSKK	9	Unmodified	_KKVSHSSKK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.8145751953125	2	514.81419	1027.61383	1.0626	0.00054705	-0.58695	-0.00030217	0.47567	0.00024488	514.8138706203732	13.058	0.37543	13.058	12.906	13.282	0					44	19	4	0	0	0	0.17854	1	2567	2567		64.207	2.0999	1	2786300			20855	2999	13311	13367	21168	21168					0.10112540462819197
KKVSVLAN	8	Unmodified	_KKVSVLAN_					0	0	0			REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.77386474609375	2	429.774003	857.533452	0.80348	0.00034532	-0.98135	-0.00042176	-0.17787	-7.6442E-05	429.77356776546736	18.646	0.1742	18.646	18.559	18.734	0					9	4	3	0	0	0	0.27512	1	5504	5504		90.777	3.0224	1	1100900	+		20856	12024	13312	13368	21169	21169					0.09898679139746491
KKVTGHLL	8	Unmodified	_KKVTGHLL_					0	0	0		PNLIP|p.I372L|1|0.21|ENSG00000175535|chr10:116560469-116560469|A/T|missense_variant	PNLIP|p.I372L|1|0.21|ENSG00000175535|chr10:116560469-116560469|A/T|missense_variant	PNLIP|p.I372L|1|0.21|ENSG00000175535|chr10:116560469-116560469|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2897644042969	2	448.28982	894.565087	-2.6109	-0.0011705	1.8517	0.00083008	-0.75928	-0.00034038	448.29077783882013	37.375	0.21267	37.375	37.298	37.511	0					17	10	2	0	0	0	0.79567	1	13382	13382		17.365	0	1	121110			20857	11947	13313	13369	21170	21170					0.1135867189370856
KKVTNAAKK	9	Unmodified	_KKVTNAAKK_					0	0	0			REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.3188171386719	2	494.319109	986.623664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.536	1	14.536	14.036	15.036	0								0	0	0	0.37517	1	3561	3561		18.262	0.89712	1		+		20858	22087	13314	13370	21171	21171					0.12981728468184883
KKVVEKVQ	8	Unmodified	_KKVVEKVQ_					0	0	0		CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290;CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant;CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.3083190917969	2	479.30821	956.601866	0.025159	1.2059E-05	0.45848	0.00021975	0.48364	0.00023181	479.30845770490936	13.579	0.098824	13.579	13.533	13.632	0					10	5	3	0	0	0	0.28427	1	2684	2684		87.754	2.8388	1	362190			20859	484	13315	13371	21172	21172					0.12182923719615246
KKWGDRVR	8	Unmodified	_KKWGDRVR_					0	0	0			REV__COL15A1|p.L1176Ifs*39|1|0.32|ENSG00000204291|chr9:99062087-99062088|-/A|frameshift_variant	REV__COL15A1|p.L1176Ifs*39|1|0.32|ENSG00000204291|chr9:99062087-99062088|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8067016601562	2	522.8067	1043.59885	1.5265	0.00079809	-1.6154	-0.00084454	-0.088856	-4.6455E-05	522.8059453812169	15.982	0.11595	15.982	15.898	16.014	0					8	5	2	0	0	0	0.5535	1	3559	3559		53.351	21.397	1	52783	+		20860	12545	13316	13372	21173	21173					0.0787909338546342
KKWKFKPI	8	Unmodified	_KKWKFKPI_					0	0	0		tr|U7SRD6|U7SRD6_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01719PE=3SV=1	tr|U7SRD6|U7SRD6_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01719PE=3SV=1	tr|U7SRD6|U7SRD6_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01719PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.8435668945312	2	537.844762	1073.67497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.651	1	22.651	22.151	23.151	0								0	0	0	1.7419	1	6437	6437		35.201	0	1				20861	22720	13317	13373	21174	21174					0.14108097232883665
KKWMDFNT	8	Oxidation (M)	_KKWM(Oxidation (M))DFNT_		KKWM(1)DFNT		KKWM(42)DFNT	0	0	1			REV__ENST00000261070.6_1_3:119388418-119388478:-|nuORF	REV__ENST00000261070.6_1_3:119388418-119388478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.2593994140625	2	543.257859	1084.50117	1.881	0.0010219	0.8289	0.00045031	2.7099	0.0014722	543.2583346454051	20.934	0.17645	20.934	20.848	21.025	0					10	4	3	0	0	0	0.64144	1	6590	6590		42.396	42.396	1	434950	+		20862	18010	13318	13374	21175	21175		675			-0.037704763255760554
KKWNVQIE	8	Unmodified	_KKWNVQIE_					0	0	0			REV__ENST00000526269.2_1_11:128561691-128562836:-|nuORF	REV__ENST00000526269.2_1_11:128561691-128562836:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7881469726562	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.067	1	22.067	21.567	22.567	0								0	0	0	1.7419	1	7111	7111		84.916	10.66	1		+		20863	19995	13319	13375	21176	21176					0.056334491971938405
KKWYLFMK	8	Unmodified	_KKWYLFMK_					0	0	0			REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.3248901367188	2	572.322805	1142.63106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.864	1	14.864	14.364	15.364	0								0	0	0	1.7419	1	3794	3794		28.254	7.3073	1		+		20864	18682	13320	13376	21177	21177					0.065447447442466
KKYADVII	8	Unmodified	_KKYADVII_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;ENST00000491309.5_1_9:134400429-134401843:-|nuORF;ENST00000463772.5_1_1:165867222-165877057:+|nuORF;ENST00000479872.5_1_1:165872390-165877057:+|nuORF;nc|ENSG00000143179|Q9BZX2-2|UCK2;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2899169921875	2	475.289485	948.564418	2.3202	0.0011028	-3.0278	-0.0014391	-0.70762	-0.00033632	475.2881958033623	43.258	0.18596	43.258	43.171	43.357	0					10	7	2	0	0	0	0.70055	1	17331	17331		33.516	1.5607	1	49418			20865	4530	13321	13377	21178	21178					0.08807832453999254
KKYEQLKA	8	Unmodified	_KKYEQLKA_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2;ENST00000483432.1_1_9:140070142-140074912:-|nuORF	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5345458984375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.307	1	25.307	24.807	25.807	0								0	0	0	1.7419	1	7857	7857		14.865	0	1				20866	6599	13322	13378	21179	21179					0.0781033333993264
KKYKYIKK	8	Unmodified	_KKYKYIKK_					0	0	0			REV__nc|ENSG00000153815|Q8IY22-3|CMIP	REV__nc|ENSG00000153815|Q8IY22-3|CMIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.8534545898438	2	549.855327	1097.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.792	1	13.792	13.292	14.292	0								0	0	0	1.7419	1	2881	2881		38.806	2.3594	1		+		20867	15548	13323	13379	21180	21180					0.15116062541756037
KKYVTQIQ	8	Unmodified	_KKYVTQIQ_					0	0	0			REV__tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	REV__tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2976989746094	2	504.297842	1006.58113	0.64879	0.00032718	0.044165	2.2272E-05	0.69295	0.00034946	504.2979750972944	18.57	1.9968	18.57	18.473	20.47	0					169	62	5	0	0	0	0.51384	1	5426	5426		58.782	0	1	122650000	+		20868	21907	13324	13380	21181	21181					0.07810333339955378
KLAISSLMQ	9	Unmodified	_KLAISSLMQ_					0	0	0		ENST00000440114.1_1_2:198359415-198360034:-|nuORF	ENST00000440114.1_1_2:198359415-198360034:-|nuORF	ENST00000440114.1_1_2:198359415-198360034:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7856750488281	2	495.786253	989.557952	-0.037545	-1.8614E-05	-0.18266	-9.0559E-05	-0.2202	-0.00010917	495.7860790014076	23.572	0.31658	23.572	23.312	23.629	0					12	6	3	0	0	0	0.40353	1	8104	8104		41.427	2.1738	1	442160			20869	9570	13325	13381	21182	21182					0.06275571230980859
KLANMMPYL	9	Unmodified	_KLANMMPYL_					0	0	0			REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7818603515625	2	540.782656	1079.55076	1.997	0.0010799	-1.317	-0.00071219	0.68	0.00036773	540.7820114164977	24.803	0.65993	24.803	24.545	25.205	0					34	13	4	0	0	0	0.35045	1	8688	8688		45.952	3.5558	1	2776800	+		20870	14180	13326	13382	21183	21183					0.014165153588919566
KLARHSTGLQ	10	Unmodified	_KLARHSTGLQ_					0	0	0		ENSG00000182674|ENST00000523207|KCNB2;KCNB1|p.V402Lfs*6|1|0.32|ENSG00000158445|chr20:49374356-49374357|-/TCCTGCAA|frameshift_variant;ENSG00000158445|ENST00000371741|KCNB1	ENSG00000182674|ENST00000523207|KCNB2	ENSG00000182674|ENST00000523207|KCNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.8204956054688	2	555.822547	1109.63054	-1.0221	-0.00056809	0.072253	4.016E-05	-0.94981	-0.00052793	555.8225846813123	21.525	0.20652	21.525	21.422	21.629	0					9	5	3	0	0	0	0.4287	1	6247	6247		40.778	10.46	1	435370			20871	6912	13327	13383	21184	21184					0.08011041348754588
KLASSGHSHF	10	Unmodified	_KLASSGHSHF_					0	0	0			REV__ENST00000437289.1_1_10:2544043-2579735:+|nuORF	REV__ENST00000437289.1_1_10:2544043-2579735:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7699584960938	2	535.772522	1069.53049	-1.3725	-0.00073534	-2.755	-0.001476	-4.1275	-0.0022114	535.7706737382848	26.901	0.1236	26.901	26.852	26.976	0					5	3	2	0	0	0	0.41335	1	8738	8738		54.776	10.66	1	85637	+		20872	19213	13328	13384	21185	21185					-0.0014919598504548048
KLASSIAFTYN	11	Unmodified	_KLASSIAFTYN_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;ENST00000497540.1_1_13:35644101-35644990:+|nuORF;NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.5523681640625	3	405.552039	1213.63429	0.97064	0.00039364	-0.089515	-3.6303E-05	0.88112	0.00035734	405.55202577542104	21.922	1.6375	21.922	21.779	23.417	0					75	38	4	0	0	0	0.50799	1	7030	7030		32.616	0.98149	1	2337700			20873	6393	13329	13385	21186	21186					0.03601666331951492
KLASSIAFTYN	11	Unmodified	_KLASSIAFTYN_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;ENST00000497540.1_1_13:35644101-35644990:+|nuORF;NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.5524597167969	3	405.552039	1213.63429	1.0788	0.00043751	-0.0002394	-9.7089E-08	1.0786	0.00043741	405.55206648611744	21.817	1.5039	21.817	21.708	23.212	0					55	30	2	0	0	0	0.66915	1	7281	7281		27.554	0	1	2516700			20874	6393	13329	13385	21187	21187					0.03601666331951492
KLASSIAFTYN	11	Unmodified	_KLASSIAFTYN_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;ENST00000497540.1_1_13:35644101-35644990:+|nuORF;NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.8251342773438	2	607.824421	1213.63429	2.9427	0.0017886	-1.7184	-0.0010445	1.2243	0.00074416	607.8235672794793	21.863	1.3178	21.863	21.704	23.022	0					56	26	4	0	0	0	0.11572	1	7175	7175		85.862	10.819	1	1744400			20875	6393	13329	13385	21188	21188					0.03601666331951492
KLATEYKH	8	Unmodified	_KLATEYKH_					0	0	0			REV__ENSG00000143816|ENST00000272164|WNT9A	REV__ENSG00000143816|ENST00000272164|WNT9A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.27252197265625	2	495.274367	988.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.86	1	16.86	16.36	17.36	0								0	0	0	1.7419	1	4653	4653		38.806	3.1879	1		+		20876	15209	13330	13386	21189	21189					0.03945473788792242
KLAVNMVPFPH	11	Unmodified	_KLAVNMVPFPH_					0	0	0		ENST00000405234.1_1_6:39967351-39967723:+|nuORF	ENST00000405234.1_1_6:39967351-39967723:+|nuORF	ENST00000405234.1_1_6:39967351-39967723:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.8485107421875	2	626.847176	1251.6798	1.1331	0.00071028	0.8125	0.00050932	1.9456	0.0012196	626.8477911299029	27.166	0.30325	27.166	27.075	27.378	0					20	7	4	0	0	0	0.24585	1	9463	9463		68.787	2.3575	1	1544700			20877	9275	13331	13387	21190	21190					0.06402613313343863
KLCGRYIRIY	10	Unmodified	_KLCGRYIRIY_					0	0	0		ENST00000267294.4_1_13:100617617-100617761:-|nuORF	ENST00000267294.4_1_13:100617617-100617761:-|nuORF	ENST00000267294.4_1_13:100617617-100617761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	642.8671875	2	642.8659	1283.71725	0.21714	0.00013959	1.8904	0.0012153	2.1075	0.0013549	642.8672035897496	24.379	0.32115	24.379	24.187	24.508	0					23	10	3	0	0	0	0.64178	1	7148	7148		29.15	4.6304	1	190070			20878	8360	13332	13388	21191	21191					0.08673704578950492
KLCLEVSR	8	Unmodified	_KLCLEVSR_					0	0	0		TRMT12|p.N369Kfs*12|1|0.36|ENSG00000183665|chr8:124452031-124452032|-/A|frameshift_variant;TRMT12|p.N373Mfs*53|1|0.47|ENSG00000183665|chr8:124452041-124452041|A/-|frameshift_variant;ENSG00000183665|ENST00000328599|TRMT12	TRMT12|p.N369Kfs*12|1|0.36|ENSG00000183665|chr8:124452031-124452032|-/A|frameshift_variant	TRMT12|p.N369Kfs*12|1|0.36|ENSG00000183665|chr8:124452031-124452032|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2691650390625	2	474.27077	946.526987	-0.59692	-0.0002831	-3.7311	-0.0017695	-4.328	-0.0020526	474.2689916080217	20.921	0.14621	20.921	20.854	21	0					8	4	2	0	0	0	0.64144	1	5913	5913		42.396	1.618	1	204960			20879	6976	13333	13389	21192	21192					0.051584179167321054
KLCYEKVRE	9	Unmodified	_KLCYEKVRE_					0	0	0			REV__ENSG00000133985|ENST00000256367|TTC9	REV__ENSG00000133985|ENST00000256367|TTC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.3161010742188	2	584.313166	1166.61178	1.2343	0.00072121	3.2516	0.0018999	4.4859	0.0026211	584.315211043092	36.287	0.22328	36.287	36.134	36.357	0					10	6	2	0	0	0	0.27123	1	13667	13667		45.972	19.279	1	88229	+		20880	14726	13334	13390	21193	21193					0.03513743662665547
KLDAILGR	8	Unmodified	_KLDAILGR_					0	0	0		nc|ENSG00000166546|Q3B7T3-3|BEAN1	nc|ENSG00000166546|Q3B7T3-3|BEAN1	nc|ENSG00000166546|Q3B7T3-3|BEAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2792053222656	2	443.279452	884.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.869	1	20.869	20.369	21.369	0								0	0	0	1.7419	1	6831	6831		34.173	0	1				20881	11629	13335	13391	21194	21194					0.09746081514037996
KLDAKSWIYK	10	Unmodified	_KLDAKSWIYK_					0	0	0			REV__ENSG00000134321|ENST00000382040|RSAD2	REV__ENSG00000134321|ENST00000382040|RSAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.3565673828125	2	626.358431	1250.70231	0.18748	0.00011743	-3.5559	-0.0022273	-3.3685	-0.0021099	626.3565277651616	22.393	0.088346	22.393	22.346	22.434	0					6	2	3	0	0	0	0.38179	1	6331	6331		37.812	0	1	217710	+		20882	14739	13336	13392	21195	21195					0.08698535982603062
KLDKKIAKS	9	Unmodified	_KLDKKIAKS_					0	0	0			REV__tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	REV__tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.22491455078125	3	344.225486	1029.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.402	1	25.402	24.902	25.902	0								0	0	0	0.3804	1	8889	8889		16.717	1.8525	1		+		20883	22143	13337	13393	21196	21196					0.14098881782433637
KLDKNKLK	8	Unmodified	_KLDKNKLK_					0	0	0		tr|U7SYG6|U7SYG6_FUSNUGyrI-likesmallmoleculebindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00854PE=4SV=1	tr|U7SYG6|U7SYG6_FUSNUGyrI-likesmallmoleculebindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00854PE=4SV=1	tr|U7SYG6|U7SYG6_FUSNUGyrI-likesmallmoleculebindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00854PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.8211975097656	2	493.821484	985.628415	2.7803	0.001373	-3.3757	-0.001667	-0.59541	-0.00029403	493.8198161228306	16.375	0.26873	16.375	16.166	16.434	0					6	5	2	0	0	0	0.50061	1	4536	4536		60.118	5.3419	1	590410			20884	22873	13338	13394	21197	21197					0.13502612610932374
KLDKYELAV	9	Unmodified	_KLDKYELAV_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.8095703125	2	539.810782	1077.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.228	1	12.228	11.728	12.728	0								0	0	0	0.24544	1	2314	2314		45.952	0	1				20885	3616	13339	13395	21198	21198					0.0713118279156788
KLDRGKVNK	9	Unmodified	_KLDRGKVNK_					0	0	0			REV__ENST00000485889.1_1_3:37035756-37038145:+|nuORF	REV__ENST00000485889.1_1_3:37035756-37038145:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.3268432617188	2	529.327465	1056.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.399	1	22.399	21.899	22.899	0								0	0	0	0.24544	1	6587	6587		44.377	0.26039	1		+		20886	19659	13340	13396	21199	21199					0.11432229354136325
KLEDGPKFLK	10	Unmodified	_KLEDGPKFLK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.2326354980469	3	392.23253	1173.67576	-0.047944	-1.8805E-05	0.15519	6.0871E-05	0.10725	4.2066E-05	392.2325568094886	25.684	0.42701	25.684	25.578	26.006	0					13	10	2	0	0	0	0.65895	1	7755	7755		27.047	2.5281	1	64388			20887	5177	13341	13397	21200	21200					0.09586847091281925
KLEDGPKFLK	10	Unmodified	_KLEDGPKFLK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.2324523925781	3	392.23253	1173.67576	-0.15462	-6.0648E-05	0.17646	6.9212E-05	0.021835	8.5643E-06	392.2325663030466	26.039	0.80297	26.039	25.732	26.535	0					44	17	4	0	0	0	0.2602	1	8900	8900		72.096	15.463	1	1520600			20888	5177	13341	13397	21201	21201					0.09586847091281925
KLEDGPKFLK	10	Unmodified	_KLEDGPKFLK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2327575683594	3	392.23253	1173.67576	0.39325	0.00015424	-0.19331	-7.5822E-05	0.19994	7.8422E-05	392.2324842607676	26.024	1.2404	26.024	25.687	26.927	0					55	23	4	0	0	0	0.11826	1	9231	9231		92.239	19.996	1	2839800			20889	5177	13341	13397	21202	21202					0.09586847091281925
KLEGKSLPCL	10	Unmodified	_KLEGKSLPCL_					0	0	0		KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant	KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant	KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.312255859375	2	544.312635	1086.61072	-1.4936	-0.00081296	-0.83924	-0.00045681	-2.3328	-0.0012698	544.3120273314676	37.264	0.28466	37.264	37.143	37.428	0					18	14	2	0	0	0	0.68774	1	13334	13334		23.523	1.5628	1	81053			20890	11239	13342	13398	21203	21203					0.07087529293767147
KLEKKENK	8	Unmodified	_KLEKKENK_					0	0	0		tr|U7T3E8|U7T3E8_FUSNUriboflavinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00614PE=4SV=1	tr|U7T3E8|U7T3E8_FUSNUriboflavinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00614PE=4SV=1	tr|U7T3E8|U7T3E8_FUSNUriboflavinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00614PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.8087463378906	2	508.808574	1015.60259	-0.10237	-5.2089E-05	0.15548	7.911E-05	0.053106	2.7021E-05	508.80846456420676	21.838	0.11537	21.838	21.762	21.878	0					6	3	2	0	0	0	0.71588	1	6087	6087		31.53	3.6476	1	83264			20891	22966	13343	13399	21204	21204					0.09541718368654983
KLEQIAPK	8	Unmodified	_KLEQIAPK_					0	0	0			REV__ENST00000486705.1_1_3:139062973-139067190:+|nuORF	REV__ENST00000486705.1_1_3:139062973-139067190:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2889709472656	2	463.78711	925.559667	-0.44203	-0.00020501	0.0054323	2.5194E-06	-0.43659	-0.00020249	463.7869619513322	19.058	0.31483	19.058	18.78	19.095	0					15	9	2	0	0	0	0.73426	1	4809	4809		29.15	2.4566	1	128460	+		20892	16602	13344	13400	21205	21205					0.09390948311227021
KLFDFVNAK	9	Unmodified	_KLFDFVNAK_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.306396484375	2	541.305667	1080.59678	1.8938	0.0010251	-1.1897	-0.00064399	0.70412	0.00038115	541.3047257211067	38.159	0.22284	38.159	38.072	38.295	0					19	9	3	0	0	0	0.19952	1	14485	14485		61.691	8.7546	1	175350			20893	4863	13345	13401	21206	21206					0.05970619856975645
KLFDFVNAK	9	Unmodified	_KLFDFVNAK_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.3054809570312	2	541.305667	1080.59678	1.3444	0.00072771	-0.65608	-0.00035514	0.68828	0.00037257	541.30537190865	38.127	0.16798	38.127	38.045	38.213	0					7	5	2	0	0	0	0.51991	1	14939	14939		30.318	4.8675	1	75041			20894	4863	13345	13401	21207	21207					0.05970619856975645
KLFDFVNAK	9	Unmodified	_KLFDFVNAK_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.3063354492188	2	541.305667	1080.59678	0.64595	0.00034966	0.14018	7.5881E-05	0.78613	0.00042554	541.3055681027716	38.095	0.24639	38.095	37.988	38.235	0					11	5	3	0	0	0	0.15558	1	14937	14937		66.962	32.789	1	207410			20895	4863	13345	13401	21208	21208					0.05970619856975645
KLFEVMRP	8	Unmodified	_KLFEVMRP_					0	0	0			REV__KPNA7|p.I322*|1|0.03|ENSG00000185467|chr7:99185098-99185099|AT/-|frameshift_variant	REV__KPNA7|p.I322*|1|0.03|ENSG00000185467|chr7:99185098-99185099|AT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.28662109375	2	510.288963	1018.56337	-0.31226	-0.00015934	-3.3247	-0.0016966	-3.637	-0.0018559	510.28720710075606	22.844	0.12383	22.844	22.784	22.908	0					9	4	3	0	0	0	0.3961	1	6774	6774		71.296	15.791	1	198310	+		20896	17027	13346	13402	21209	21209					0.05483294813438988
KLFHGSLEEL	10	Unmodified	_KLFHGSLEEL_					0	0	0		ENST00000552420.5_1_12:57870791-57873587:-|nuORF;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ARHGAP9|p.H688Pfs*20|1|0.35|ENSG00000123329|chr12:57472650-57472651|-/G|frameshift_variant;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9	ENST00000552420.5_1_12:57870791-57873587:-|nuORF	ENST00000552420.5_1_12:57870791-57873587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.81982421875	2	586.819138	1171.62372	0.10307	6.0481E-05	0.48419	0.00028413	0.58726	0.00034461	586.8194044313276	37.067	0.69646	37.067	36.522	37.219	0					33	19	2	0	0	0	0.53919	1	13889	13889		44.377	3.599	1	156140			20897	211	13347	13403	21210	21210					0.04477683677509958
KLFHGSLEEL	10	Unmodified	_KLFHGSLEEL_					0	0	0		ENST00000552420.5_1_12:57870791-57873587:-|nuORF;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ARHGAP9|p.H688Pfs*20|1|0.35|ENSG00000123329|chr12:57472650-57472651|-/G|frameshift_variant;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9	ENST00000552420.5_1_12:57870791-57873587:-|nuORF	ENST00000552420.5_1_12:57870791-57873587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.8192138671875	2	586.819138	1171.62372	1.4264	0.00083707	-0.94499	-0.00055454	0.48146	0.00028253	586.8186372123138	37.071	0.8842	37.071	36.42	37.304	0					41	26	2	0	0	0	0.38179	1	14494	14494		54.776	20.855	1	204800			20898	211	13347	13403	21211	21211					0.04477683677509958
KLFLGNSNK	9	Unmodified	_KLFLGNSNK_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.79583740234375	2	510.795466	1019.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.59	1	21.59	21.09	22.09	0								0	0	0	0.23445	1	5967	5967		45.972	1.8554	1		+		20899	22138	13348	13404	21212	21212					0.06737449197191836
KLFNTSGKI	9	Unmodified	_KLFNTSGKI_					0	0	0		tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.29864501953125	2	504.297842	1006.58113	-0.83573	-0.00042146	2.8893	0.0014571	2.0536	0.0010356	504.29891047576757	23.49	0.95164	23.49	22.908	23.86	0					42	32	2	0	0	0	0.44593	1	7126	7126		37.812	2.1932	1	184440			20900	22595	13349	13405	21213	21213					0.07810333339955378
KLFPPKTNV	9	Unmodified	_KLFPPKTNV_					0	0	0			REV__ENST00000577307.1_1_17:33266566-33269658:-|nuORF	REV__ENST00000577307.1_1_17:33266566-33269658:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.3182983398438	2	522.316035	1042.61752	0.4054	0.00021175	0.91832	0.00047966	1.3237	0.0006914	522.3163405591471	32.606	0.28131	32.606	32.464	32.745	0					18	11	2	0	0	0	0.40353	1	10876	10876		19.997	0	1	70953	+		20901	20425	13350	13406	21214	21214					0.09791210236653569
KLFQKRGR	8	Unmodified	_KLFQKRGR_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1;ENST00000467220.1_1_7:158683991-158695375:+|nuORF	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.8243408203125	2	516.824892	1031.63523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.633	1	11.633	11.133	12.133	0								0	0	0	1.7419	1	2299	2299		50.025	7.5501	1				20902	3493	13351	13407	21215	21215					0.12067970282168972
KLFTLHRGS	9	Unmodified	_KLFTLHRGS_					0	0	0			REV__ENST00000359365.8_1_3:50369488-50378094:-|nuORF	REV__ENST00000359365.8_1_3:50369488-50378094:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.27490234375	2	529.808908	1057.60326	-1.1934	-0.00063225	0.86086	0.00045609	-0.3325	-0.00017616	529.8094143865883	26.933	0.31203	26.933	26.852	27.164	0					25	8	5	0	0	0	0.3269	1	8720	8720		40.778	40.778	1	1522300	+		20903	18527	13352	13408	21216	21216					0.07676557808372309
KLFTTSKPA	9	Unmodified	_KLFTTSKPA_					0	0	0			REV__KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7902526855469	2	496.792392	991.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.881	1	19.881	19.381	20.381	0								0	0	0	0.27939	1	6358	6358		39.253	1.4413	1		+		20904	17811;20794	13353	13409	21217	21217					0.0741093096565919
KLFVNYDVA	9	Unmodified	_KLFVNYDVA_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7888793945312	2	534.78985	1067.56515	2.0961	0.001121	-3.2086	-0.0017159	-1.1125	-0.00059496	534.7880001480605	21.439	0.10811	21.439	21.357	21.465	0					4	2	2	0	0	0	0.22377	1	6215	6215		58.782	9.2459	1	42945	+		20905	17102	13354	13410	21218	21218					0.034066271030496864
KLGARTELY	9	Unmodified	_KLGARTELY_					0	0	0			REV__ENST00000272444.7_1_2:73989718-73989775:-|nuORF	REV__ENST00000272444.7_1_2:73989718-73989775:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8016357421875	2	525.800749	1049.58694	1.1823	0.00062163	0.23665	0.00012443	1.4189	0.00074606	525.8010385562493	30.229	0.11699	30.229	30.145	30.262	0					5	3	2	0	0	0	0.44593	1	10274	10274		37.812	4.9991	1	35087	+		20906	18105	13355	13411	21219	21219					0.06413431851615314
KLGDLNRLT	9	Unmodified	_KLGDLNRLT_					0	0	0			REV__ENST00000315872.10_1_2:11334463-11335121:-|nuORF	REV__ENST00000315872.10_1_2:11334463-11335121:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.306396484375	2	515.306198	1028.59784	3.2396	0.0016694	-2.2982	-0.0011843	0.94145	0.00048513	515.3050613070816	25.29	0.26942	25.29	25.179	25.448	0					7	5	2	0	0	0	0.1424	1	8850	8850		69.628	0.78148	1	1075200	+		20907	18300	13356	13412	21220	21220					0.08468834225891442
KLGFTNKK	8	Unmodified	_KLGFTNKK_					0	0	0			REV__ENST00000414423.6_1_1:224575719-224575878:-|nuORF	REV__ENST00000414423.6_1_1:224575719-224575878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2872619628906	2	468.287277	934.560001	-0.64272	-0.00030098	0.51072	0.00023916	-0.132	-6.1815E-05	468.2875016254368	14.691	0.21927	14.691	14.643	14.863	0					8	5	3	0	0	0	0.2498	1	3638	3638		101.6	2.2258	1	725180	+		20908	19020	13357	13413	21221	21221					0.09010368031090366
KLGFTNKK	8	Unmodified	_KLGFTNKK_					0	0	0			REV__ENST00000414423.6_1_1:224575719-224575878:-|nuORF	REV__ENST00000414423.6_1_1:224575719-224575878:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2868347167969	2	468.287277	934.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.69	1	14.69	14.19	15.19	0								0	0	0	1.7419	1	3866	3866		69.628	0.8408	1		+		20909	19020	13357	13413	21222	21222					0.09010368031090366
KLGGAAVL	8	Unmodified	_KLGGAAVL_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.73822021484375	2	364.736889	727.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.937	1	21.937	21.437	22.437	0								0	0	0	1.7419	1	7221	7221		21.702	1.2205	1				20910	1665	13358	13414	21223	21223					0.08459336048235855
KLGLALAV	8	Unmodified	_KLGLALAV_					0	0	0		nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.7692565917969	2	392.768189	783.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.218	1	21.218	20.718	21.718	0								0	0	0	1.7419	1	5810	5810		29.842	6.8048	1				20911	11503	13359	13415	21224	21224					0.12140482116410567
KLGVHCVTCQ	10	Unmodified	_KLGVHCVTCQ_					0	0	0		BRSK2|p.R355Gfs*4|2|0.39|ENSG00000174672|chr11:1445650-1445650|C/-|frameshift_variant;BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2	BRSK2|p.R355Gfs*4|2|0.39|ENSG00000174672|chr11:1445650-1445650|C/-|frameshift_variant	BRSK2|p.R355Gfs*4|2|0.39|ENSG00000174672|chr11:1445650-1445650|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2750854492188	2	544.272986	1086.53142	3.6779	0.0020018	0.020896	1.1373E-05	3.6988	0.0020131	544.272985151883	26.077	0.61972	26.077	25.866	26.486	0					25	12	3	0	0	0	0.2978	1	9158	9158		67.494	3.2864	1	9357900			20912	324	13360	13416	21225	21225					-0.008384409320115083
KLHPHSTI	8	Unmodified	_KLHPHSTI_					0	0	0		WDR7|p.P1192H|1|0.26|ENSG00000091157|chr18:56923970-56923970|C/A|missense_variant	WDR7|p.P1192H|1|0.26|ENSG00000091157|chr18:56923970-56923970|C/A|missense_variant	WDR7|p.P1192H|1|0.26|ENSG00000091157|chr18:56923970-56923970|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.76849365234375	2	466.769252	931.52395	-1.185	-0.00055314	-0.33746	-0.00015752	-1.5225	-0.00071066	466.76920485434	37.222	0.15717	37.222	37.138	37.296	0					7	4	2	0	0	0	0.66372	1	14556	14556		38.806	0	1	71525			20913	23114	13361	13417	21226	21226					0.05544910854234786
KLHTTDVLL	9	Unmodified	_KLHTTDVLL_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.3123168945312	2	520.310949	1038.60735	1.0137	0.00052744	-0.57594	-0.00029967	0.43777	0.00022778	520.3104862645815	35.716	0.89845	35.716	35.57	36.469	0					97	34	5	0	0	0	0.55379	1	12993	12993		26.693	3.6504	1	19303000	+		20914	14980	13362	13418	21227	21227					0.08958602511415847
KLHVNYLT	8	Unmodified	_KLHVNYLT_					0	0	0		ENSG00000150347|ENST00000279873|ARID5B;nc|ENSG00000150347|Q14865-2|ARID5B	ENSG00000150347|ENST00000279873|ARID5B	ENSG00000150347|ENST00000279873|ARID5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.85992431640625	3	329.858915	986.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.69	1	18.69	18.19	19.19	0								0	0	0	1.7419	1	4692	4692		37.812	4.9991	1				20915	4922	13363	13419	21228	21228					0.0611006416845612
KLIDRTESL	9	Unmodified	_KLIDRTESL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.8121337890625	2	537.811313	1073.60807	-0.31451	-0.00016915	2.5784	0.0013867	2.2639	0.0012175	537.8123393239141	27.079	0.35231	27.079	26.9	27.253	0					19	12	2	0	0	0	0.22823	1	8591	8591		58.246	1.614	1	380240			20916	3653	13364	13420	21229	21229					0.07421397160464949
KLIDRTESL	9	Unmodified	_KLIDRTESL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8117065429688	2	537.811313	1073.60807	1.8928	0.001018	0.13543	7.2838E-05	2.0282	0.0010908	537.8107680019	27.294	1.0045	27.294	26.661	27.665	0					30	15	3	0	0	0	0.0097668	1	9890	9890		141.52	23.709	1	2471000			20917	3653	13364	13420	21230	21230					0.07421397160464949
KLIDRTESL	9	Unmodified	_KLIDRTESL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.8129272460938	2	537.811313	1073.60807	1.0191	0.00054809	2.9397	0.001581	3.9588	0.0021291	537.8121642247829	27.155	0.32633	27.155	26.936	27.262	0					19	8	3	0	0	0	0.14578	1	8844	8844		68.846	7.1549	1	336820			20918	3653	13364	13420	21231	21231					0.07421397160464949
KLIDRTESL	9	Unmodified	_KLIDRTESL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.8115844726562	2	537.811313	1073.60807	-1.4388	-0.00077383	2.4337	0.0013089	0.99488	0.00053506	537.8125825719103	27.147	0.3307	27.147	26.964	27.294	0					10	5	3	0	0	0	0.19952	1	8857	8857		61.691	5.2575	1	257220			20919	3653	13364	13420	21232	21232					0.07421397160464949
KLIDRTESL	9	Unmodified	_KLIDRTESL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8118896484375	2	537.811313	1073.60807	2.0036	0.0010775	1.0329	0.00055551	3.0365	0.001633	537.8108509958768	27.276	0.57504	27.276	27.036	27.611	0					35	11	5	0	0	0	0.022525	1	9740	9740		117.81	5.4001	1	2488300			20920	3653	13364	13420	21233	21233					0.07421397160464949
KLIGAGQCAE	10	Unmodified	_KLIGAGQCAE_					0	0	0			REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.25799560546875	2	495.257859	988.501166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.702	1	40.702	40.202	41.202	0								0	0	0	0.38797	1	13606	13606		34.173	2.2177	1		+		20921	21985	13365	13421	21234	21234					0.006455236744500326
KLIKLDFCK	9	Unmodified	_KLIKLDFCK_					0	0	0			REV__nc|ENSG00000086827|O43264-2|ZW10	REV__nc|ENSG00000086827|O43264-2|ZW10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.3356323242188	2	554.33337	1106.65219	3.6011	0.0019962	0.57243	0.00031731	4.1735	0.0023135	554.3337040322745	18.296	0.36505	18.296	18.19	18.555	0					14	7	3	0	0	0	0.25761	1	5462	5462		47.657	1.6851	1	4524100	+		20922	13372	13366	13422	21235	21235					0.10312710053085539
KLIKLDFCK	9	Unmodified	_KLIKLDFCK_					0	0	0			REV__nc|ENSG00000086827|O43264-2|ZW10	REV__nc|ENSG00000086827|O43264-2|ZW10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.892578125	3	369.891339	1106.65219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.317	1	18.317	17.817	18.817	0								0	0	0	0.20989	1	5460	5460		49.536	0	1		+		20923	13372	13366	13422	21236	21236					0.10312710053085539
KLILAMTEK	9	Unmodified	_KLILAMTEK_					0	0	0			REV__ENSG00000071242|ENST00000265678|RPS6KA2	REV__ENSG00000071242|ENST00000265678|RPS6KA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.8184814453125	2	523.817553	1045.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.361	1	35.361	34.861	35.861	0								0	0	0	0.05454	1	13644	13644		84.916	0	1		+		20924	13186	13367	13423	21237	21237					0.09956717299155571
KLIRQKKETV	10	Unmodified	_KLIRQKKETV_					0	0	0		ENSG00000118492|ENST00000397944|ADGB;ADGB|p.K1379Rfs*12|1|0.29|ENSG00000118492|chr6:146784714-146784714|A/-|frameshift_variant	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	621.8988647460938	2	621.898254	1241.78196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.591	1	52.591	52.091	53.091	0								0	0	0	0.4201	1	16131	16131		13.454	0.64233	1				20925	72	13368	13424	21238	21238					0.17073602656591902
KLITETKL	8	Unmodified	_KLITETKL_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.3023986816406	2	473.302593	944.590633	-0.31729	-0.00015017	0.12629	5.9773E-05	-0.191	-9.0402E-05	473.30256877955105	38.37	0.19493	38.37	38.299	38.494	0					18	11	2	0	0	0	0.78142	1	12513	12513		23.042	1.3402	1	155000	+		20926	14584	13369	13425	21239	21239					0.11612101625451032
KLKATNIQ	8	Unmodified	_KLKATNIQ_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.28497314453125	2	458.284734	914.554916	0.18753	8.5941E-05	0.15482	7.0953E-05	0.34235	0.00015689	458.2848310943623	13.135	0.20053	13.135	12.978	13.178	0					9	5	2	0	0	0	0.30437	1	2895	2895		82.305	5.5309	1	104730	+		20927	14084	13370	13426	21240	21240					0.09422064168461475
KLKERSSK	8	Unmodified	_KLKERSSK_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;TRIP11|p.N841Mfs*4|1|0.27|ENSG00000100815|chr14:92005454-92005454|T/-|frameshift_variant;TRIP11|p.T971Qfs*34|1|0.43|ENSG00000100815|chr14:92005065-92005065|T/-|frameshift_variant;TRIP11|p.K1010Sfs*12|1|0.15|ENSG00000100815|chr14:92004947-92004947|T/-|frameshift_variant	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.3027648925781	2	488.300916	974.587279	3.509	0.0017134	-0.16234	-7.9269E-05	3.3466	0.0016342	488.30103614290124	25.742	0.20327	25.742	25.629	25.832	0					9	4	3	0	0	0	0.35045	1	8038	8038		76.774	5.4784	1	201000			20928	2067	13371	13427	21241	21241					0.09896851571465959
KLKESMTK	8	Unmodified	_KLKESMTK_					0	0	0			REV__FILIP1L|p.L673Yfs*5|1|0.1|ENSG00000168386|chr3:99849658-99849658|A/-|frameshift_variant	REV__FILIP1L|p.L673Yfs*5|1|0.1|ENSG00000168386|chr3:99849658-99849658|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.77642822265625	2	482.778428	963.542302	-2.9204	-0.0014099	-0.73207	-0.00035343	-3.6525	-0.0017633	482.7779268688355	33.488	0.19502	33.488	33.374	33.569	0					12	5	3	0	0	0	0.59773	1	11744	11744		49.442	0	1	335130	+		20929	16254	13372	13428	21242	21242					0.059072847139191254
KLKEYNKL	8	Unmodified	_KLKEYNKL_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.3137817382812	2	518.313492	1034.61243	0.25561	0.00013249	0.15744	8.1601E-05	0.41305	0.00021409	518.3135068472134	24.388	0.16838	24.388	24.278	24.447	0					9	3	3	0	0	0	0.63077	1	8417	8417		44.117	1.7207	1	429580			20930	22818	13373	13429	21243	21243					0.09650906374031365
KLKFIPLNT	9	Unmodified	_KLKFIPLNT_					0	0	0			REV__nc|ENSG00000112335|O60493-3|SNX3	REV__nc|ENSG00000112335|O60493-3|SNX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.5620422363281	3	358.562099	1072.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.785	1	30.785	30.285	31.285	0								0	0	0	0.3063	1	11436	11436		33.922	2.3918	1		+		20931	14002	13374	13430	21244	21244					0.13104069787800654
KLKKFDPN	8	Unmodified	_KLKKFDPN_					0	0	0			REV__ENST00000405166.1_1_6:111368073-111368568:-|nuORF	REV__ENST00000405166.1_1_6:111368073-111368568:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.29217529296875	2	495.292559	988.570566	-0.6569	-0.00032536	-0.17118	-8.4784E-05	-0.82808	-0.00041014	495.2925666620357	18.776	0.098789	18.776	18.719	18.818	0					4	2	2	0	0	0	0.67394	1	5699	5699		37.159	1.5408	1	401580	+		20932	18968	13375	13431	21245	21245					0.0758235068550448
KLKKTSVNT	9	Unmodified	_KLKKTSVNT_					0	0	0		tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1	tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1	tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.816162109375	2	509.816399	1017.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.011	1	24.011	23.511	24.511	0								0	0	0	0.35377	1	8029	8029		24.519	1.9395	1				20933	22811	13376	13432	21246	21246					0.11014004885703343
KLKQLCARA	9	Unmodified	_KLKQLCARA_					0	0	0			REV__POLG|p.H659Qfs*24|1|0.2|ENSG00000140521|chr15:89324199-89324200|AG/-|frameshift_variant	REV__POLG|p.H659Qfs*24|1|0.2|ENSG00000140521|chr15:89324199-89324200|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8109130859375	2	515.813136	1029.61172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.772	1	38.772	38.272	39.272	0								0	0	0	0.35507	1	13858	13858		24.203	4.8428	1		+		20934	15078	13377	13433	21247	21247					0.09809788453321744
KLKQLNLEQ	9	Unmodified	_KLKQLNLEQ_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-2|KIF27	REV__nc|ENSG00000165115|Q86VH2-2|KIF27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.3352661132812	2	557.334956	1112.65536	0.57621	0.00032114	0.080879	4.5077E-05	0.65709	0.00036622	557.3350473130506	32.086	0.15619	32.086	32.001	32.157	0					5	3	2	0	0	0	0.13726	1	12163	12163		84.916	8.1414	1	87501	+		20935	16022	13378	13434	21248	21248					0.10353676431441272
KLKTCSRAN	9	Unmodified	_KLKTCSRAN_					0	0	0		KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF	KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7846374511719	2	510.784576	1019.5546	1.3814	0.00070562	-1.2866	-0.00065717	0.094847	4.8446E-05	510.7839035838038	12.617	0.089555	12.617	12.571	12.66	0					4	2	2	0	0	0	0.17854	1	2739	2739		64.207	2.0999	1	102790			20936	5183	13379	13435	21249	21249					0.04560321176961679
KLKYELCR	8	Unmodified	_KLKYELCR_					0	0	0		nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.8007202148438	2	526.799694	1051.58484	0.95468	0.00050292	0.16194	8.5312E-05	1.1166	0.00058824	526.7996001893648	28.232	0.1669	28.232	28.141	28.308	0					5	3	2	0	0	0	0.6088	1	10318	10318		47.657	5.2612	1	70963			20937	11446	13380	13436	21250	21250					0.06110679842140598
KLLAAMLSQ	9	Oxidation (M)	_KLLAAM(Oxidation (M))LSQ_		KLLAAM(1)LSQ		KLLAAM(75)LSQ	0	0	1		ENST00000521406.5_1_8:69442879-69730478:+|nuORF;nc|nan|Q49A92-3|C8orf34;nc|nan|Q49A92-2|C8orf34;ENSG00000165084|ENST00000518698|C8orf34	ENST00000521406.5_1_8:69442879-69730478:+|nuORF	ENST00000521406.5_1_8:69442879-69730478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7861633300781	2	495.786253	989.557952	0.054507	2.7024E-05	0.013537	6.7116E-06	0.068045	3.3736E-05	495.78653844992914	23.338	0.23636	23.338	23.146	23.383	0					13	6	3	0	0	0	0.11898	1	6733	6733		75.043	13.352	1	100690			20938	5755	13381	13437	21251	21251		235			0.06275571230980859
KLLARAPPVS	10	Unmodified	_KLLARAPPVS_					0	0	0			REV__SENP2|p.E257Kfs*29|1|0.19|ENSG00000163904|chr3:185611692-185611692|G/-|frameshift_variant	REV__SENP2|p.E257Kfs*29|1|0.19|ENSG00000163904|chr3:185611692-185611692|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.3353271484375	2	526.334759	1050.65496	0.45113	0.00023745	0.6455	0.00033975	1.0966	0.00057719	526.3349262690666	17.795	0.11357	17.795	17.729	17.843	0					5	3	2	0	0	0	0.3029	1	4539	4539		46.457	0	1	80320	+		20939	15932	13382	13438	21252	21252					0.13166301502246824
KLLCIEQL	8	Unmodified	_KLLCIEQL_					0	0	0			REV__CDK5|p.R50Q|1|0.35|ENSG00000164885|chr7:151056953-151056953|C/T|missense_variant	REV__CDK5|p.R50Q|1|0.35|ENSG00000164885|chr7:151056953-151056953|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2828674316406	2	480.283346	958.552139	2.3173	0.001113	-1.432	-0.00068778	0.88531	0.0004252	480.28262178284325	13.418	0.33049	13.418	13.226	13.557	0					11	7	3	0	0	0	0.60719	1	3141	3141		47.916	1.9636	1	868210	+		20940	12406	13383	13439	21253	21253					0.07120472719293502
KLLEDHIQ	8	Unmodified	_KLLEDHIQ_					0	0	0			REV__ENSG00000107719|ENST00000263563|PALD1	REV__ENSG00000107719|ENST00000263563|PALD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2795104980469	2	498.279649	994.544745	-1.108	-0.0005521	1.1604	0.00057821	0.052391	2.6106E-05	498.2802235317423	24.177	0.10377	24.177	24.119	24.223	0					5	3	2	0	0	0	0.41701	1	7374	7374		68.787	10.005	1	87904	+		20941	13860	13384	13440	21254	21254					0.04725456443236453
KLLGHRFH	8	Unmodified	_KLLGHRFH_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2978515625	2	504.29851	1006.58247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.829	1	47.829	47.329	48.329	0								0	0	0	1.7419	1	18204	18204		31.955	5.1588	1				20942	3670	13385	13441	21255	21255					0.07944012219365959
KLLHITSHI	9	Unmodified	_KLLHITSHI_					0	0	0			REV__ENST00000534562.1_1_11:9749605-9771962:+|nuORF	REV__ENST00000534562.1_1_11:9749605-9771962:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3272094726562	2	531.326934	1060.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.003	1	17.003	16.503	17.503	0								0	0	0	0.34907	1	4176	4176		25.45	4.5032	1		+		20943	14720	13386	13442	21256	21256					0.1114201498521652
KLLKVFHN	8	Unmodified	_KLLKVFHN_					0	0	0			REV__THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant	REV__THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.54339599609375	3	333.543038	997.607286	-1.9068	-0.000636	1.9703	0.00065716	0.063442	2.1161E-05	333.5437787064284	30.916	0.37879	30.916	30.786	31.164	0					15	10	2	0	0	0	0.64144	1	10583	10583		42.396	6.7778	1	102500	+		20944	16244	13387	13443	21257	21257					0.10838647302080062
KLLLNHTN	8	Unmodified	_KLLLNHTN_					0	0	0		nc|ENSG00000165555|Q6NXP6-2|NOXRED1;ENSG00000165555|ENST00000380835|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.781982421875	2	476.782359	951.550165	-0.13079	-6.2361E-05	-0.53369	-0.00025446	-0.66449	-0.00031682	476.7820769950823	23.712	0.23331	23.712	23.615	23.849	0					13	8	3	0	0	0	0.46905	1	6894	6894		63.306	2.3343	1	158600			20945	5810	13388	13444	21258	21258					0.07245180025699938
KLLLNHTN	8	Unmodified	_KLLLNHTN_					0	0	0		nc|ENSG00000165555|Q6NXP6-2|NOXRED1;ENSG00000165555|ENST00000380835|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.782470703125	2	476.782359	951.550165	-1.5124	-0.00072108	0.9483	0.00045213	-0.56409	-0.00026895	476.78277544440016	23.738	0.1908	23.738	23.669	23.86	0					10	6	2	0	0	0	0.54629	1	7168	7168		55.504	4.1688	1	221520			20946	5810	13388	13444	21259	21259					0.07245180025699938
KLLPENNVL	9	Unmodified	_KLLPENNVL_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;TP53|p.C124Afs*46|1|0.51|ENSG00000141510|chr17:7675999-7675999|A/-|frameshift_variant;TP53|p.V73Wfs*50|1|0.78|ENSG00000141510|chr17:7676153-7676153|G/-|frameshift_variant;TP53|p.Q38Kfs*6|1|0.56|ENSG00000141510|chr17:7676257-7676257|G/-|frameshift_variant;TP53|p.L35Ffs*8|1|0.64|ENSG00000141510|chr17:7676264-7676265|-/A|frameshift_variant;TP53|p.P60Qfs*63|1|0.38|ENSG00000141510|chr17:7676190-7676190|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.P60Qfs*63|1|0.38|ENSG00000141510|chr17:7676190-7676190|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.3118286132812	2	520.310949	1038.60735	0.26342	0.00013706	0.3816	0.00019855	0.64502	0.00033561	520.3109996564391	35.678	0.91825	35.678	35.557	36.476	0					125	44	5	0	0	0	0.56424	1	12312	12312		25.574	2.5316	1	11294000			20947	4452;22558	13389	13445	21260	21260					0.08958602511415847
KLLPFGSRV	9	Unmodified	_KLLPFGSRV_					0	0	0			REV__nc|ENSG00000163359|P12111-4|COL6A3	REV__nc|ENSG00000163359|P12111-4|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.8161315917969	2	508.816202	1015.61785	0.95914	0.00048802	-0.4028	-0.00020495	0.55634	0.00028307	508.8157693887532	30.89	0.43586	30.89	30.725	31.161	0					43	17	3	0	0	0	0.42902	1	9846	9846		39.253	3.6345	1	195770	+		20948	12565	13390	13446	21261	21261					0.11066629956519591
KLMLFDGRKK	10	Oxidation (M)	_KLM(Oxidation (M))LFDGRKK_		KLM(1)LFDGRKK		KLM(44)LFDGRKK	0	0	1			REV__SPATA31D1|p.W428L|1|0.36|ENSG00000214929|chr9:81991753-81991753|G/T|missense_variant	REV__SPATA31D1|p.W428L|1|0.36|ENSG00000214929|chr9:81991753-81991753|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.9156494140625	3	417.912914	1250.71691	3.4043	0.0014227	2.5746	0.001076	5.979	0.0024987	417.9140982232591	22.348	0.25303	22.348	22.206	22.459	0					11	7	2	0	0	0	0.5155	1	6566	6566		43.651	6.0509	1	81988	+		20949	21594	13391	13447	21262	21262		782			0.10158284859062405
KLMPFLLE	8	Unmodified	_KLMPFLLE_					0	0	0			REV__ENST00000481102.5_1_1:85124114-85127897:-|nuORF	REV__ENST00000481102.5_1_1:85124114-85127897:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7865905761719	2	495.788264	989.561975	0.042724	2.1182E-05	-3.3719	-0.0016717	-3.3291	-0.0016505	495.78658026242545	23.409	0.23544	23.409	23.267	23.502	0					10	5	2	0	0	0	0.7126	1	7131	7131		31.955	1.4512	1	58066	+		20950	19596	13392	13448	21263	21263					0.0667766072467657
KLNAKLPD	8	Unmodified	_KLNAKLPD_					0	0	0			REV__nc|ENSG00000253309|A8MV23|SERPINE3	REV__nc|ENSG00000253309|A8MV23|SERPINE3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.77130126953125	2	449.77146	897.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.696	1	34.696	34.196	35.196	0								0	0	0	1.7419	1	11712	11712		42.474	0	1		+		20951	21231	13393	13449	21264	21264					0.07550375277128296
KLNEVIVNK	9	Unmodified	_KLNEVIVNK_					0	0	0		nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.8244018554688	2	528.824224	1055.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.343	1	22.343	21.843	22.843	0								0	0	0	0.0011674	1	6302	6302		126.24	34.977	1				20952	4369	13394	13450	21265	21265					0.10830291402749026
KLNEVIVNK	9	Unmodified	_KLNEVIVNK_					0	0	0		nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.824462890625	2	528.824224	1055.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.676	1	22.676	22.176	23.176	0								0	0	0	0.0091041	1	7401	7401		172.25	39.491	1				20953	4369	13394	13450	21266	21266					0.10830291402749026
KLNEVIVNK	9	Unmodified	_KLNEVIVNK_					0	0	0		nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.8245239257812	2	528.824224	1055.63389	0.90562	0.00047892	-0.52319	-0.00027668	0.38243	0.00020224	528.8238060943717	22.576	0.25941	22.576	22.468	22.728	0					9	5	3	0	0	0	0.047855	1	7675	7675		96.034	27.187	1	211990			20954	4369	13394	13450	21267	21267					0.10830291402749026
KLNEVIVNK	9	Unmodified	_KLNEVIVNK_					0	0	0		nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.8251342773438	2	528.824224	1055.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.475	1	22.475	21.975	22.975	0								0	0	0	0.14033	1	6701	6701		62.107	10.915	1				20955	4369	13394	13450	21268	21268					0.10830291402749026
KLNEVIVNK	9	Unmodified	_KLNEVIVNK_					0	0	0		nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.8245239257812	2	528.824224	1055.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.451	1	22.451	21.951	22.951	0								0	0	0	0.069826	1	6689	6689		80.455	8.5771	1				20956	4369	13394	13450	21269	21269					0.10830291402749026
KLNEVIVNK	9	Unmodified	_KLNEVIVNK_					0	0	0		nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.824462890625	2	528.824224	1055.63389	0.71999	0.00038075	-0.3415	-0.00018059	0.37849	0.00020016	528.8240002151575	22.547	0.26641	22.547	22.438	22.705	0					7	5	2	0	0	0	5.4275E-05	1	7528	7528		195.05	35.77	1	1100700			20957	4369	13394	13450	21270	21270					0.10830291402749026
KLNGSKFDL	9	Unmodified	_KLNGSKFDL_					0	0	0			REV__tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	REV__tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2877197265625	2	511.287474	1020.5604	0.35691	0.00018249	0.2576	0.00013171	0.61451	0.00031419	511.28774753471475	36.115	0.34182	36.115	36.01	36.352	0					17	12	2	0	0	0	0.48389	1	12916	12916		34.173	2.6427	1	214450	+		20958	21904	13395	13451	21271	21271					0.05093742960275449
KLNQQKRHRET	11	Unmodified	_KLNQQKRHRET_					0	0	0		ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	719.4044799804688	2	719.405298	1436.79604	0.24379	0.00017538	-0.7594	-0.00054632	-0.51562	-0.00037094	719.9062608259776	31.503	0.27837	31.503	31.31	31.589	0					24	11	3	0	0	0	0.82978	1	10096	10096		8.6937	1.294	1	113910			20959	7033	13396	13452	21272	21272					0.09511648137572593
KLNTDLYHTK	10	Unmodified	_KLNTDLYHTK_					0	0	0		nc|ENSG00000181984|A6NN73|GOLGA8CP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000261739|ENST00000562295|GOLGA8S;ENSG00000183629|ENST00000525590|GOLGA8G	nc|ENSG00000181984|A6NN73|GOLGA8CP	nc|ENSG00000181984|A6NN73|GOLGA8CP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.83544921875	2	616.83532	1231.65609	-0.45307	-0.00027947	0.23284	0.00014363	-0.22022	-0.00013584	616.8355292222078	29.691	1.0088	29.691	29.557	30.566	0					68	25	6	0	0	0	0.38194	1	10616	10616		58.23	5.141	1	16885000			20960	5056	13397	13453	21273	21273					0.04952471080491705
KLNTDLYHTK	10	Unmodified	_KLNTDLYHTK_					0	0	0		nc|ENSG00000181984|A6NN73|GOLGA8CP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000261739|ENST00000562295|GOLGA8S;ENSG00000183629|ENST00000525590|GOLGA8G	nc|ENSG00000181984|A6NN73|GOLGA8CP	nc|ENSG00000181984|A6NN73|GOLGA8CP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.8353881835938	2	616.83532	1231.65609	0.28228	0.00017412	-0.053066	-3.2733E-05	0.22922	0.00014139	616.8352513445085	29.691	0.45973	29.691	29.582	30.042	0					26	9	4	0	0	0	0.23612	1	11007	11007		75.043	6.1972	1	4648500			20961	5056	13397	13453	21274	21274					0.04952471080491705
KLNVEVKK	8	Unmodified	_KLNVEVKK_					0	0	0		TSHZ3|p.A877Pfs*28|1|0.2|ENSG00000121297|chr19:31277164-31277164|C/-|frameshift_variant;TSHZ3|p.M1028Nfs*30|1|0.15|ENSG00000121297|chr19:31276710-31276711|-/T|frameshift_variant;TSHZ3|p.E1034Rfs*45|1|0.07|ENSG00000121297|chr19:31276694-31276694|G/-|frameshift_variant;ENSG00000121297|ENST00000240587|TSHZ3;TSHZ3|p.D475N|1|0.27|ENSG00000121297|chr19:31278370-31278370|C/T|missense_variant;TSHZ3|p.D489Tfs*19|1|0.23|ENSG00000121297|chr19:31278329-31278329|T/-|frameshift_variant;TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant	TSHZ3|p.A877Pfs*28|1|0.2|ENSG00000121297|chr19:31277164-31277164|C/-|frameshift_variant	TSHZ3|p.A877Pfs*28|1|0.2|ENSG00000121297|chr19:31277164-31277164|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.3085021972656	2	479.30821	956.601866	-1.4194	-0.00068034	1.7732	0.00084989	0.35374	0.00016955	479.30898527414354	13.605	0.07801	13.605	13.566	13.644	0					8	4	3	0	0	0	0.29286	1	2828	2828		84.916	5.4645	1	190340			20962	3219	13398	13454	21275	21275					0.12182923719603878
KLNYTSRARL	10	Unmodified	_KLNYTSRARL_					0	0	0			REV__FSHR|p.T555Wfs*89|1|0.07|ENSG00000170820|chr2:48963159-48963160|-/TCCAA|frameshift_variant	REV__FSHR|p.T555Wfs*89|1|0.07|ENSG00000170820|chr2:48963159-48963160|-/TCCAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.3562622070312	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.375	1	53.375	52.875	53.875	0								0	0	0	0.4201	1	16291	16291		23.523	0.94304	1		+		20963	16378	13399	13455	21276	21276					0.09743285928584555
KLPEKSSK	8	Unmodified	_KLPEKSSK_					0	0	0		RNF141|p.V20Sfs*17|1|0.17|ENSG00000110315|chr11:10534101-10534102|-/T|frameshift_variant	RNF141|p.V20Sfs*17|1|0.17|ENSG00000110315|chr11:10534101-10534102|-/T|frameshift_variant	RNF141|p.V20Sfs*17|1|0.17|ENSG00000110315|chr11:10534101-10534102|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7765197753906	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.12	1	19.12	18.62	19.62	0								0	0	0	1.7419	1	5122	5122		45.952	3.5558	1				20964	22349	13400	13456	21277	21277					0.07778357931567825
KLPIVTSTEL	10	Unmodified	_KLPIVTSTEL_					0	0	0			REV__BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant	REV__BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.831298828125	2	550.831714	1099.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.658	1	13.658	13.158	14.158	0								0	0	0	0.4146	1	3158	3158		14.865	0	1		+		20965	12282	13401	13457	21278	21278					0.10303738480070024
KLPQTVESF	9	Unmodified	_KLPQTVESF_					0	0	0			REV__GALNT11|p.K54Nfs*26|1|0.38|ENSG00000178234|chr7:152094383-152094383|A/-|frameshift_variant	REV__GALNT11|p.K54Nfs*26|1|0.38|ENSG00000178234|chr7:152094383-152094383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7879638671875	2	524.787307	1047.56006	1.6178	0.00084901	0.087757	4.6054E-05	1.7056	0.00089506	524.7872733690308	40.245	0.2024	40.245	40.159	40.362	0					22	10	3	0	0	0	0.51817	1	14294	14294		30.504	0	1	225160	+		20966	16728	13402	13458	21279	21279					0.038183232404207956
KLPSFAVN	8	Unmodified	_KLPSFAVN_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2526550292969	2	438.252903	874.491253	-0.61252	-0.00026844	0.059364	2.6016E-05	-0.55315	-0.00024242	438.2528981917188	29.946	0.51365	29.946	29.839	30.352	0					19	13	2	0	0	0	0.70598	1	10160	10160		32.812	0.85756	1	423000	+		20967	17181	13403	13459	21280	21280					0.04898703731373644
KLQDSHKA	8	Unmodified	_KLQDSHKA_					0	0	0		nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1	nc|ENSG00000059728|Q05195-2|MXD1	nc|ENSG00000059728|Q05195-2|MXD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7565612792969	2	463.756341	925.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.633	1	20.633	20.133	21.133	0								0	0	0	1.7419	1	5796	5796		30.504	2.6214	1				20968	1313	13404	13460	21281	21281					0.03240016611937335
KLQKAVSEE	9	Unmodified	_KLQKAVSEE_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2900390625	2	516.290214	1030.56587	0.87975	0.00045421	-0.55513	-0.00028661	0.32462	0.0001676	516.2898833672016	26.685	0.31831	26.685	26.577	26.895	0					17	6	4	0	0	0	0.14603	1	9569	9569		68.787	7.8149	1	1018900			20969	11515	13405	13461	21282	21282					0.051814217520814054
KLQKNFLTQ	9	Unmodified	_KLQKNFLTQ_					0	0	0		ENSG00000203942|ENST00000370640|C10orf62	ENSG00000203942|ENST00000370640|C10orf62	ENSG00000203942|ENST00000370640|C10orf62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.3302612304688	2	560.329673	1118.64479	0.64725	0.00036267	0.17429	9.7661E-05	0.82154	0.00046033	560.3296187469037	31.67	0.29449	31.67	31.485	31.78	0					13	6	3	0	0	0	0.3269	1	11937	11937		49.442	0	1	120440			20970	7662	13406	13462	21283	21283					0.09021693777026485
KLQKQKLE	8	Unmodified	_KLQKQKLE_					0	0	0			REV__CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	REV__CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.8188781738281	2	507.818941	1013.62333	1.3008	0.00066056	-0.99625	-0.00050591	0.30453	0.00015465	507.8182148734958	14.902	0.16716	14.902	14.794	14.961	0					9	3	3	0	0	0	0.3049	1	3822	3822		71.296	0	1	858190	+		20971	12422	13407	13463	21284	21284					0.11706308748318861
KLQLIQNKTQQ	11	Unmodified	_KLQLIQNKTQQ_					0	0	0			REV__tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	REV__tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.9325256347656	3	447.933143	1340.7776	0.61449	0.00027525	-1.6347	-0.00073223	-1.0202	-0.00045697	447.93247323731117	12.76	0.14979	12.76	12.659	12.809	0					9	4	3	0	0	0	0.59204	1	2750	2750		37.508	2.33	1	159520	+		20972	21878	13408	13464	21285	21285					0.12084093443036181
KLQLSPPN	8	Unmodified	_KLQLSPPN_					0	0	0			REV__ENST00000570165.1_1_1:25662951-25663592:-|nuORF	REV__ENST00000570165.1_1_1:25662951-25663592:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.7633056640625	2	448.763635	895.512717	0.11252	5.0496E-05	-0.52938	-0.00023757	-0.41686	-0.00018707	448.7632180919281	20.313	0.11449	20.313	20.258	20.373	0					4	2	2	0	0	0	0.73426	1	6295	6295		29.15	2.3535	1	54013	+		20973	19502	13409	13465	21286	21286					0.06078088760079936
KLQVSKCI	8	Unmodified	_KLQVSKCI_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.77392578125	2	459.775688	917.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.93	1	20.93	20.43	21.43	0								0	0	0	1.7419	1	6860	6860		51.335	3.4199	1				20974	11494	13410	13466	21287	21287					0.07475605922115847
KLRALKEETGS	11	Unmodified	_KLRALKEETGS_					0	0	0			REV__ENST00000377954.3_1_11:62437223-62438723:-|nuORF	REV__ENST00000377954.3_1_11:62437223-62438723:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.23828125	3	411.238343	1230.6932	0.87479	0.00035975	-1.1884	-0.0004887	-0.31357	-0.00012895	411.2377476985607	18.988	0.24715	18.988	18.8	19.047	0					9	5	3	0	0	0	0.75314	1	5802	5802		22.562	0.87584	1	916930	+		20975	18500	13411	13467	21288	21288					0.08708142626255722
KLRDGEAKIK	10	Unmodified	_KLRDGEAKIK_					0	0	0			REV__KIF4A|p.T250I|1|0.15|ENSG00000090889|chrX:70302369-70302369|C/T|missense_variant	REV__KIF4A|p.T250I|1|0.15|ENSG00000090889|chrX:70302369-70302369|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.3534545898438	2	579.35368	1156.69281	1.4904	0.00086349	-1.5	-0.00086904	-0.009595	-5.5589E-06	579.3527807462546	17.561	0.077873	17.561	17.524	17.602	0					4	2	2	0	0	0	0.4758	1	4220	4220		47.96	2.9373	1	77383	+		20976	20788	13412	13468	21289	21289					0.12072767697077325
KLRELDQK	8	Unmodified	_KLRELDQK_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3060913085938	2	515.306198	1028.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.563	1	12.563	12.063	13.063	0								0	0	0	1.7419	1	2703	2703		27.882	3.3631	1		+		20977	14170	13413	13469	21290	21290					0.08468834225868704
KLRPHVPP	8	Unmodified	_KLRPHVPP_					0	0	0		ENST00000531005.5_1_11:65638277-65638940:-|nuORF	ENST00000531005.5_1_11:65638277-65638940:-|nuORF	ENST00000531005.5_1_11:65638277-65638940:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2947082519531	2	472.295436	942.57632	-0.12317	-5.8171E-05	-2.0761	-0.00098055	-2.1993	-0.0010387	472.29456796020526	31.052	0.2083	31.052	30.949	31.157	0					7	4	2	0	0	0	0.74117	1	11686	11686		28.254	1.4582	1	146470			20978	10432	13414	13470	21291	21291					0.10273493987835991
KLRRGEAHK	9	Unmodified	_KLRRGEAHK_					0	0	0			REV__ENST00000416295.1_1_3:50312110-50312520:+|nuORF	REV__ENST00000416295.1_1_3:50312110-50312520:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.55706787109375	3	365.55623	1093.64686	1.2312	0.00045007	1.0484	0.00038325	2.2796	0.00083332	365.5565941236755	22.162	0.36325	22.162	22.054	22.417	0					12	7	2	0	0	0	0.22377	1	7469	7469		65.465	65.465	1	1362700	+		20979	19032	13415	13471	21292	21292					0.1037816730549821
KLRRGEAHK	9	Unmodified	_KLRRGEAHK_					0	0	0			REV__ENST00000416295.1_1_3:50312110-50312520:+|nuORF	REV__ENST00000416295.1_1_3:50312110-50312520:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.55694580078125	3	365.55623	1093.64686	1.0305	0.00037669	1.033	0.00037761	2.0634	0.0007543	365.556585398096	22.181	0.46701	22.181	22.071	22.538	0					15	9	2	0	0	0	0.30951	1	7347	7347		65.465	31.544	1	2456500	+		20980	19032	13415	13471	21293	21293					0.1037816730549821
KLRRGEAHK	9	Unmodified	_KLRRGEAHK_					0	0	0			REV__ENST00000416295.1_1_3:50312110-50312520:+|nuORF	REV__ENST00000416295.1_1_3:50312110-50312520:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.83203125	2	547.830706	1093.64686	1.8774	0.0010285	0.64266	0.00035207	2.52	0.0013806	547.8309792726915	22.181	0.26534	22.181	22.071	22.337	0					10	5	3	0	0	0	0.17854	1	7348	7348		64.207	3.2353	1	1086800	+		20981	19032	13415	13471	21294	21294					0.1037816730549821
KLRWITIALT	10	Unmodified	_KLRWITIALT_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	607.88671875	2	607.884616	1213.75468	0.15435	9.3829E-05	3.3485	0.0020355	3.5029	0.0021294	607.8859922712235	17.329	0.07152	17.329	17.289	17.361	0					4	2	2	0	0	0	0.62149	1	4120	4120		26.693	7.5894	1	52603	+		20982	13685	13416	13472	21295	21295					0.15635119116200258
KLRYQQAPTL	10	Unmodified	_KLRYQQAPTL_					0	0	0			REV__GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	REV__GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.3557739257812	2	609.35368	1216.69281	2.9207	0.0017798	0.018879	1.1504E-05	2.9396	0.0017913	609.353938660343	19.484	0.21399	19.484	19.409	19.623	0					11	4	4	0	0	0	0.30737	1	6036	6036		66.429	2.8954	1	2202400	+		20983	13829	13417	13473	21296	21296					0.09312767697065283
KLSAETLRP	9	Unmodified	_KLSAETLRP_					0	0	0		ENST00000456943.6_1_6:2272473-2272845:+|nuORF	ENST00000456943.6_1_6:2272473-2272845:+|nuORF	ENST00000456943.6_1_6:2272473-2272845:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.80078125	2	507.800749	1013.58694	-0.029185	-1.482E-05	-0.29255	-0.00014856	-0.32174	-0.00016338	507.80060029219317	17.694	0.32802	17.694	17.527	17.855	0					16	8	4	0	0	0	0.0406	1	5026	5026		98.629	11.748	1	1034700			20984	9691	13418	13474	21297	21297					0.08069431851617992
KLSATPNIKK	10	Unmodified	_KLSATPNIKK_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.2323913574219	3	367.232641	1098.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.039	1	13.039	12.539	13.539	0								0	0	0	0.4201	1	2928	2928		21.78	5.2506	1		+		20985	17717	13419	13475	21298	21298					0.13070266811109832
KLSEIEKSL	9	Unmodified	_KLSEIEKSL_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8088989257812	2	523.808239	1045.60193	0.03231	1.6924E-05	1.0085	0.00052824	1.0408	0.00054517	523.8087430084971	30.716	0.15059	30.716	30.664	30.815	0					7	3	3	0	0	0	0.22837	1	11523	11523		58.23	3.4536	1	160580	+		20986	16499	13420	13476	21299	21299					0.0809487892895504
KLSGIETRI	9	Unmodified	_KLSGIETRI_					0	0	0		tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8075866699219	2	508.808574	1015.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.753	1	16.753	16.253	17.253	0								0	0	0	0.33029	1	4076	4076		29.17	1.2878	1				20987	22725	13421	13477	21300	21300					0.09541718368643615
KLSLDDVQ	8	Unmodified	_KLSLDDVQ_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2502136230469	2	459.250557	916.486562	0.87841	0.00040341	1.0897	0.00050044	1.9681	0.00090384	459.2499820095659	22.278	0.3155	22.278	22.071	22.387	0					20	6	6	0	0	0	0.41	1	7398	7398		69.628	6.0938	1	1631200			20988	5668	13422	13478	21301	21301					0.024977747979505693
KLSLNPKN	8	Unmodified	_KLSLNPKN_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;ENST00000471061.1_1_10:105163006-105164949:+|nuORF	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2768859863281	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.722	1	14.722	14.222	15.222	0								0	0	0	1.7419	1	3174	3174		49.442	0.23076	1				20989	4854	13423	13479	21302	21302					0.07949777651424483
KLSNVTLK	8	Unmodified	_KLSNVTLK_					0	0	0			REV__CHL1|p.E1008Vfs*9|1|0.09|ENSG00000134121|chr3:394848-394849|-/TGTCATTTACT|frameshift_variant	REV__CHL1|p.E1008Vfs*9|1|0.09|ENSG00000134121|chr3:394848-394849|-/TGTCATTTACT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.78668212890625	2	451.78711	901.559667	0.24019	0.00010852	-0.54811	-0.00024763	-0.30791	-0.00013911	451.78677637271346	23.377	0.19655	23.377	23.277	23.473	0					12	4	4	0	0	0	0.27512	1	7719	7719		90.777	3.0802	1	797790	+		20990	12460	13424	13480	21303	21303					0.10494948311236385
KLSPQGESL	9	Unmodified	_KLSPQGESL_					0	0	0			REV__ENSG00000120211|ENST00000239316|INSL4	REV__ENSG00000120211|ENST00000239316|INSL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7630615234375	2	479.763832	957.513111	-0.11306	-5.4244E-05	-0.38203	-0.00018329	-0.4951	-0.00023753	479.7634781786961	38.847	0.17188	38.847	38.683	38.855	0					8	6	2	0	0	0	0.37197	1	15234	15234		44.117	0	1	40819	+		20991	14271	13425	13481	21304	21304					0.032654636892857525
KLSQDDQTT	9	Unmodified	_KLSQDDQTT_					0	0	0		ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2520141601562	2	518.251286	1034.48802	1.572	0.00081471	-0.87423	-0.00045307	0.69781	0.00036164	518.2509846463665	21.866	0.36198	21.866	21.708	22.07	0					15	7	3	0	0	0	0.0792	1	7305	7305		84.916	0	1	913990			20992	3156	13426	13482	21305	21305					-0.027846359039585877
KLSRDSLSVS	10	Unmodified	_KLSRDSLSVS_					0	0	0			REV__ENST00000473529.5_1_9:34647835-34648133:+|nuORF	REV__ENST00000473529.5_1_9:34647835-34648133:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.3086547851562	2	546.306395	1090.59824	3.7839	0.0020672	0.41969	0.00022928	4.2036	0.0022965	546.3065278217373	24.355	0.31882	24.355	24.246	24.565	0					26	6	5	0	0	0	0.011749	1	8375	8375		136.27	37.639	1	16740000	+		20993	19506	13427	13483	21306	21306					0.056562091550858895
KLSSIFGQK	9	Unmodified	_KLSSIFGQK_					0	0	0			REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2977294921875	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.885	1	42.885	42.385	43.385	0								0	0	0	0.21054	1	16815	16815		49.442	0	1		+		20994	13858	13428	13484	21307	21307					0.07810333339944009
KLSSTYGKI	9	Unmodified	_KLSSTYGKI_					0	0	0		ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9;SLC26A9|p.V695M|1|0.26|ENSG00000174502|chr1:205920203-205920203|C/T|missense_variant	ENSG00000174502|ENST00000367135|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.78997802734375	2	498.78985	995.565146	0.84112	0.00041954	-1.3518	-0.00067428	-0.51072	-0.00025474	498.7893543275604	44.955	0.22612	44.955	44.845	45.071	0					22	12	3	0	0	0	0.28897	1	17444	17444		51.193	1.7511	1	106730			20995	6493	13429	13485	21308	21308					0.06718627103043673
KLSTFDLAL	9	Unmodified	_KLSTFDLAL_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.29315185546875	2	504.292225	1006.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.43	1	46.43	45.93	46.93	0								0	0	0	0.23445	1	18580	18580		45.972	3.5761	1		+		20996	17833	13430	13486	21309	21309					0.06687511245786482
KLSTHHPR	8	Unmodified	_KLSTHHPR_					0	0	0		ENST00000268058.7_1_15:74337464-74337578:+|nuORF	ENST00000268058.7_1_15:74337464-74337578:+|nuORF	ENST00000268058.7_1_15:74337464-74337578:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2771301269531	2	488.277775	974.540997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.975	1	17.975	17.475	18.475	0								0	0	0	1.7419	1	4397	4397		25.45	2.8705	1				20997	8366	13431	13487	21310	21310					0.05270831460040881
KLSVEQAFI	9	Unmodified	_KLSVEQAFI_					0	0	0			REV__ENSG00000182836|ENST00000377801|PLCXD3	REV__ENSG00000182836|ENST00000377801|PLCXD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7998046875	2	517.797675	1033.5808	1.3785	0.00071378	2.3015	0.0011917	3.68	0.0019055	517.7989113389333	29.374	0.059875	29.374	29.339	29.399	0					4	2	2	0	0	0	0.44593	1	9265	9265		30.504	0	1	37124	+		20998	16899	13432	13488	21311	21311					0.06534913620089355
KLSYSLKK	8	Unmodified	_KLSYSLKK_					0	0	0		ENST00000377689.2_1_9:38527126-38527906:+|nuORF;nc|ENSG00000176007|B1ANY3|FAM220BP	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.802734375	2	483.80276	965.590967	-0.60797	-0.00029414	0.46442	0.00022469	-0.14355	-6.9448E-05	483.8029308287951	47.297	0.23795	47.297	47.191	47.429	0					24	14	2	0	0	0	0.74405	1	18077	18077		27.882	4.8398	1	189090			20999	9054	13433	13489	21312	21312					0.10679521345332432
KLTAKRNE	8	Unmodified	_KLTAKRNE_					0	0	0			REV__ENST00000505627.2_1_8:62673655-62673919:-|nuORF	REV__ENST00000505627.2_1_8:62673655-62673919:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2850341796875	2	480.285266	958.555979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.13	1	13.13	12.63	13.63	0								0	0	0	1.7419	1	2919	2919		102.77	6.9582	1		+		21000	19835	13434	13490	21313	21313					0.07504278537373921
KLTEIPHPK	9	Unmodified	_KLTEIPHPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.8817138671875	3	354.88172	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.749	1	26.749	26.249	27.249	0								0	0	0	0.32356	1	9611	9611		23.523	0	1		+		21001	15602;22247	13435	13491	21314	21314					0.09498308748311501
KLTEQLVEQ	9	Unmodified	_KLTEQLVEQ_					0	0	0			REV__PNMA2|p.G87Vfs*5|1|0.13|ENSG00000240694|chr8:26508496-26508496|C/-|frameshift_variant	REV__PNMA2|p.G87Vfs*5|1|0.13|ENSG00000240694|chr8:26508496-26508496|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.303955078125	2	544.303321	1086.59209	1.874	0.00102	-0.34008	-0.00018511	1.534	0.00083494	544.3028821360932	30.706	0.31754	30.706	30.61	30.928	0					15	7	3	0	0	0	0.19952	1	11111	11111		61.691	1.7605	1	342440	+		21002	17682	13436	13492	21315	21315					0.05225690923566617
KLTEVLNR	8	Unmodified	_KLTEVLNR_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7958984375	2	486.795466	971.57638	-0.046581	-2.2675E-05	-0.31848	-0.00015504	-0.36506	-0.00017771	486.7953893469743	15.7	0.16708	15.7	15.624	15.791	0					17	7	3	0	0	0	0.6088	1	3480	3480		47.657	3.2801	1	758960			21003	2950	13437	13493	21316	21316					0.08945449197187827
KLTGLLSGQ	9	Unmodified	_KLTGLLSGQ_					0	0	0			REV__ENSG00000186871|ENST00000334463|ERCC6L	REV__ENSG00000186871|ENST00000334463|ERCC6L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.77667236328125	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.694	1	16.694	16.194	17.194	0								0	0	0	0.3245	1	4054	4054		30.318	0.47618	1		+		21004	17094	13438	13494	21317	21317					0.07778357931579194
KLTGVIVENE	10	Unmodified	_KLTGVIVENE_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.8760070800781	3	367.876523	1100.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.495	1	25.495	24.995	25.995	0								0	0	0	0.3963	1	7936	7936		31.634	1.3165	1				21005	1179	13439	13495	21318	21318					0.06145977440610295
KLTGVVVRWR	10	Unmodified	_KLTGVVVRWR_					0	0	0			REV__ENST00000582275.5_1_17:46048501-46048661:+|nuORF	REV__ENST00000582275.5_1_17:46048501-46048661:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.3799438476562	2	607.380032	1212.74551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.936	1	32.936	32.436	33.436	0								0	0	0	0.38475	1	12560	12560		35.152	4.5832	1		+		21006	20462	13440	13496	21319	21319					0.14764770550550566
KLTIGNALH	9	Unmodified	_KLTIGNALH_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.86273193359375	3	322.862548	965.565815	-0.66746	-0.0002155	0.77461	0.00025009	0.10715	3.4595E-05	322.8628592619574	19.083	0.16651	19.083	19.026	19.192	0					7	5	2	0	0	0	0.53064	1	5117	5117		29.17	6.5904	1	89701			21007	11353	13441	13497	21320	21320					0.08165466542754984
KLTLRLHSQ	9	Unmodified	_KLTLRLHSQ_					0	0	0			REV__ENSG00000131864|ENST00000254181|USP29	REV__ENSG00000131864|ENST00000254181|USP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.3360595703125	2	548.33529	1094.65603	1.8472	0.0010129	-0.37526	-0.00020577	1.4719	0.0008071	548.3350067850957	20.07	0.2857	20.07	20.019	20.305	0					13	6	3	0	0	0	0.1424	1	6177	6177		69.628	9.5094	1	858370	+		21008	14637	13442	13498	21321	21321					0.11248515871170639
KLTNESKK	8	Unmodified	_KLTNESKK_					0	0	0			REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.278564453125	2	474.279649	946.544745	0.60876	0.00028872	-1.3027	-0.00061784	-0.69392	-0.00032911	474.2791681359458	11.957	5.5556	11.957	11.762	17.318	0					339	121	5	0	0	0	0.37144	1	4489	4489		74.255	9.0978	1	515490000	+		21009	21778	13443	13499	21322	21322					0.06933456443232444
KLTNKLNT	8	Unmodified	_KLTNKLNT_					0	0	0			REV__nc|ENSG00000156384|Q86XK3-3|SFR1	REV__nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2816467285156	2	466.282192	930.549831	-0.6243	-0.0002911	-0.3716	-0.00017327	-0.9959	-0.00046437	466.28200968731755	17.169	1.1387	17.169	17.071	18.209	0					76	29	5	0	0	0	0.6088	1	4558	4558		47.657	0	1	46212000	+		21010	15627	13444	13500	21323	21323					0.08177760305852644
KLTNTASNHS	10	Unmodified	_KLTNTASNHS_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7732543945312	2	536.772719	1071.53089	0.20484	0.00010995	1.8497	0.00099289	2.0546	0.0011028	536.7736104030798	26.157	0.46714	26.157	25.986	26.453	0					17	11	3	0	0	0	0.24329	1	8999	8999		74.165	4.5374	1	535030			21011	6806	13445	13501	21324	21324					-0.002018210558617284
KLTQPVDKQI	10	Unmodified	_KLTQPVDKQI_					0	0	0			REV__ENSG00000167139|ENST00000300504|TBC1D21	REV__ENSG00000167139|ENST00000300504|TBC1D21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3505249023438	2	585.348063	1168.68157	3.21	0.0018789	0.85512	0.00050054	4.0651	0.0023795	585.3485404675067	31.149	0.3599	31.149	31.043	31.403	0					19	7	3	0	0	0	0.16745	1	11628	11628		83.647	16.685	1	1029700	+		21012	16171	13446	13502	21325	21325					0.10397945602949221
KLTSKFFPG	9	Unmodified	_KLTSKFFPG_					0	0	0		ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7947998046875	2	512.794935	1023.57532	-0.46146	-0.00023663	0.55683	0.00028554	0.095365	4.8903E-05	512.7951517084573	25.405	0.65166	25.405	25.222	25.874	0					28	11	4	0	0	0	0.22377	1	8987	8987		58.782	0.55203	1	2725200			21013	9696	13447	13503	21326	21326					0.06447234828283399
KLTSLNKYIEE	11	Unmodified	_KLTSLNKYIEE_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant;GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant;GOLGB1|p.E1174Gfs*19|1|0.24|ENSG00000173230|chr3:121696989-121696990|-/T|frameshift_variant;GOLGB1|p.E1375Vfs*20|1|0.02|ENSG00000173230|chr3:121696386-121696387|-/AACTTAGTGAGAAAGAAGCAGCTCTCACT|frameshift_variant;GOLGB1|p.E1375Sfs*20|1|0.04|ENSG00000173230|chr3:121696385-121696386|-/TGGA|frameshift_variant;GOLGB1|p.S1501Vfs*38|1|0.2|ENSG00000173230|chr3:121696007-121696007|T/-|frameshift_variant;ENST00000472829.1_1_3:121448028-121448843:-|nuORF;GOLGB1|p.H151Rfs*5|1|0.02|ENSG00000173230|chr3:121726981-121726993|CCTGGAGCTTATG/-|frameshift_variant;GOLGB1|p.N731Mfs*23|1|0.39|ENSG00000173230|chr3:121698316-121698316|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	669.366943359375	2	669.369192	1336.72383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.632	1	33.632	33.132	34.132	0								0	0	0	0.45344	1	11824	11824		25.126	6.8639	1				21014	6416	13448	13504	21327	21327					0.06893876220692619
KLTTELVTK	9	Unmodified	_KLTTELVTK_					0	0	0		tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8189086914062	2	516.818607	1031.62266	1.2689	0.00065578	-0.93295	-0.00048216	0.33594	0.00017362	516.8181944405641	33.845	0.27074	33.845	33.739	34.009	0					21	7	4	0	0	0	0.47473	1	12603	12603		35.152	4.8343	1	679200			21015	22801	13449	13505	21328	21328					0.108114693086236
KLTVSGQFK	9	Unmodified	_KLTVSGQFK_					0	0	0			REV__ZNF25|p.P7S|1|0.12|ENSG00000175395|chr10:37957543-37957543|G/A|missense_variant	REV__ZNF25|p.P7S|1|0.12|ENSG00000175395|chr10:37957543-37957543|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.3	1	29.3	28.8	29.8	0								0	0	0	0.35899	1	9233	9233		23.523	3.5259	1		+		21016	22316	13450	13506	21329	21329					0.07810333339955378
KLTVSGQFK	9	Unmodified	_KLTVSGQFK_					0	0	0			REV__ZNF25|p.P7S|1|0.12|ENSG00000175395|chr10:37957543-37957543|G/A|missense_variant	REV__ZNF25|p.P7S|1|0.12|ENSG00000175395|chr10:37957543-37957543|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2980651855469	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.265	1	44.265	43.765	44.765	0								0	0	0	0.29356	1	17247	17247		36.447	1.2947	1		+		21017	22316	13450	13506	21330	21330					0.07810333339955378
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.3489990234375	2	585.350074	1168.6856	1.5087	0.00088311	-2.561	-0.0014991	-1.0523	-0.00061599	585.3491231164109	30.942	0.094135	30.942	30.879	30.973	0					6	4	2	0	0	0	0.46194	1	9904	9904		36.447	0	1	51259			21018	9131	13451	13507	21331	21331					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.3501586914062	2	585.350074	1168.6856	1.1853	0.00069381	-0.29626	-0.00017341	0.88903	0.0005204	585.3498861269571	31.178	0.42081	31.178	31.08	31.501	0					17	10	3	0	0	0	0.003936	1	11316	11316		163.15	0	1	506400			21019	9131	13451	13507	21332	21332					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.3505859375	2	585.350074	1168.6856	-0.29394	-0.00017206	0.89226	0.00052228	0.59832	0.00035023	585.3505817189945	30.957	0.22229	30.957	30.895	31.117	0					16	8	3	0	0	0	0.27123	1	10219	10219		53.089	0	1	124200			21020	9131	13451	13507	21333	21333					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.3502807617188	2	585.350074	1168.6856	1.4021	0.00082069	-0.45081	-0.00026388	0.95124	0.00055681	585.3497215390294	31.154	0.41014	31.154	31.027	31.438	0					17	9	2	0	0	0	0.0030642	1	11723	11723		168.26	0	1	643140			21021	9131	13451	13507	21334	21334					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.3505249023438	2	585.350074	1168.6856	0.54908	0.0003214	0.069604	4.0743E-05	0.61868	0.00036214	585.35001888895	30.951	0.17901	30.951	30.864	31.043	0					7	4	2	0	0	0	0.076532	1	10612	10612		85.862	0	1	127570			21022	9131	13451	13507	21335	21335					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3501586914062	2	585.350074	1168.6856	1.5195	0.00088943	-1.322	-0.00077381	0.19753	0.00011562	585.3492995632885	31.118	0.45994	31.118	31.011	31.471	0					22	9	3	0	0	0	0.0011548	1	11610	11610		181.41	0	1	1281200			21023	9131	13451	13507	21336	21336					0.10800035096622196
KLVKAAGFSS	10	Unmodified	_KLVKAAGFSS_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	1.4876	0.00050062	-1.3915	-0.00046828	0.096077	3.2333E-05	336.5337967162917	25.098	6.4193	25.098	24.447	30.866	0					183	131	2	0	0	0	0.70877	1	8645	8645		20.03	0	1	646530			21024	1407	13452	13508	21337	21337					0.07810333339944009
KLVPALPGSAP	11	Unmodified	_KLVPALPGSAP_					0	0	0		ENST00000216780.8_1_14:24563387-24566117:+|nuORF	ENST00000216780.8_1_14:24563387-24566117:+|nuORF	ENST00000216780.8_1_14:24563387-24566117:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.3212280273438	2	525.321317	1048.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.811	1	31.811	31.311	32.311	0								0	0	0	0.4303	1	10241	10241		30.318	2.4355	1				21025	8165	13453	13509	21338	21338					0.10571192891075043
KLVRQPNIQ	9	Unmodified	_KLVRQPNIQ_					0	0	0		HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.3352661132812	2	548.33529	1094.65603	1.7808	0.00097649	-1.5013	-0.00082321	0.27955	0.00015329	548.3343550881051	19.97	0.42007	19.97	19.859	20.28	0					21	8	4	0	0	0	0.087582	1	6409	6409		82.305	4.9875	1	5449200			21026	3499	13454	13510	21339	21339					0.11248515871170639
KLVRSKEL	8	Unmodified	_KLVRSKEL_					0	0	0			REV__nc|ENSG00000136286|B0I1T2-2|MYO1G	REV__nc|ENSG00000136286|B0I1T2-2|MYO1G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.8132019042969	2	486.813659	971.612765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.585	1	15.585	15.085	16.085	0								0	0	0	1.7419	1	3528	3528		39.253	0	1		+		21027	14856	13455	13511	21340	21340					0.12582326093888696
KLWEEDRLAKE	11	Unmodified	_KLWEEDRLAKE_					0	0	0		ENSG00000172361|ENST00000398545|CFAP53	ENSG00000172361|ENST00000398545|CFAP53	ENSG00000172361|ENST00000398545|CFAP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.9206848144531	3	472.920903	1415.74088	-0.5767	-0.00027273	-0.12842	-6.0732E-05	-0.70512	-0.00033346	472.9208399858175	33.509	1.4403	33.509	33.019	34.46	0					86	30	6	0	0	0	0.69207	1	12801	12801		28.384	0	1	21627000			21028	6359	13456	13512	21341	21341					0.049637968264505616
KLWMKFIIE	9	Unmodified	_KLWMKFIIE_					0	0	0		ENST00000278616.8_1_11:108151731-108151785:+|nuORF	ENST00000278616.8_1_11:108151731-108151785:+|nuORF	ENST00000278616.8_1_11:108151731-108151785:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.34912109375	2	604.34902	1206.68349	0.69326	0.00041897	-0.61669	-0.0003727	0.076567	4.6273E-05	604.3486128221053	17.592	0.1677	17.592	17.483	17.651	0					8	3	3	0	0	0	0.13267	1	5265	5265		45.952	0	1	696540			21029	8402	13457	13513	21342	21342					0.08841283087190277
KLWQYTGQ	8	Unmodified	_KLWQYTGQ_					0	0	0			REV__ENST00000372492.8_2_1:43649473-43650825:+|nuORF	REV__ENST00000372492.8_2_1:43649473-43650825:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2650756835938	2	512.266542	1022.51853	-0.31823	-0.00016302	-1.8819	-0.00096405	-2.2002	-0.0011271	512.2660503899474	19.19	0.10369	19.19	19.117	19.221	0					5	3	2	0	0	0	0.72381	1	5158	5158		30.504	4.9296	1	117140	+		21030	18670	13458	13514	21343	21343					0.008171872717412043
KLWSIDLI	8	Unmodified	_KLWSIDLI_					0	0	0			REV__ENST00000420967.5_1_12:118454632-118456902:+|nuORF	REV__ENST00000420967.5_1_12:118454632-118456902:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2994079589844	2	494.29731	986.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.651	1	32.651	32.151	33.151	0								0	0	0	1.7419	1	11374	11374		44.117	5.3107	1		+		21031	19077	13459	13515	21344	21344					0.08624118971033568
KLYEKGSVE	9	Unmodified	_KLYEKGSVE_					0	0	0			REV__tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1	REV__tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7844848632812	2	526.784764	1051.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.572	1	26.572	26.072	27.072	0								0	0	0	0.14033	1	8372	8372		62.107	7.3311	1		+		21032	21867	13460	13516	21345	21345					0.031260193778280154
KLYINNQY	8	Unmodified	_KLYINNQY_					0	0	0			REV__ENST00000480838.1_1_2:163066458-163099837:-|nuORF	REV__ENST00000480838.1_1_2:163066458-163099837:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2807006835938	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.677	1	11.677	11.177	12.177	0								0	0	0	1.7419	1	2232	2232		4.3163	3.1111	1		+		21033	13270	13461	13517	21346	21346					0.0196545644323578
KLYLDMLE	8	Unmodified	_KLYLDMLE_					0	0	0			REV__nc|ENSG00000166349|P15918-2|RAG1	REV__nc|ENSG00000166349|P15918-2|RAG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.284912109375	2	512.772811	1023.53107	0.55318	0.00028366	-2.4634	-0.0012631	-1.9102	-0.00097949	513.2718612123107	22.547	0.21708	22.547	22.367	22.584	0					7	4	2	0	0	0	0.59411	1	7599	7599		50.025	7.5501	1	45815	+		21034	16112	13462	13518	21347	21347					0.020244626197722937
KLYMYTYY	8	Unmodified	_KLYMYTYY_					0	0	0		ENST00000394205.7_2_4:141303286-141303394:+|nuORF	ENST00000394205.7_2_4:141303286-141303394:+|nuORF	ENST00000394205.7_2_4:141303286-141303394:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.7722778320312	2	572.772811	1143.53107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.06	1	31.06	30.56	31.56	0								0	0	0	1.7419	1	11267	11267		40.573	3.4135	1				21035	9171	13463	13519	21348	21348					-0.03495537380217684
KLYQVISTP	9	Unmodified	_KLYQVISTP_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;PRKAA2|p.F90Lfs*3|4|0.22|ENSG00000162409|chr1:56691421-56691421|T/-|frameshift_variant;PRKAA2|p.F540Lfs*7|1|0.23|ENSG00000162409|chr1:56707668-56707668|T/-|frameshift_variant;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.80615234375	2	524.8055	1047.59645	1.4193	0.00074486	-0.437	-0.00022934	0.9823	0.00051552	524.8052306510142	36.094	0.20708	36.094	35.981	36.188	0					14	9	2	0	0	0	0.4966	1	11833	11833		32.812	3.6629	1	47339			21036	3779	13464	13520	21349	21349					0.07455200137133033
KLYVNDIQ	8	Unmodified	_KLYVNDIQ_					0	0	0			REV__tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1	REV__tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7721862792969	2	496.7742	991.533846	-1.1756	-0.00058402	-3.1928	-0.0015861	-4.3685	-0.0021701	496.77273522830455	15.425	0.084887	15.425	15.374	15.459	0					6	3	2	0	0	0	0.58597	1	3508	3508		51.335	0	1	71202	+		21037	22093	13465	13521	21350	21350					0.037740540689469526
KLYYFYKCK	9	Unmodified	_KLYYFYKCK_					0	0	0			REV__ENST00000589761.1_1_17:58378837-58469252:-|nuORF	REV__ENST00000589761.1_1_17:58378837-58469252:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.22369384765625	3	419.222977	1254.6471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.826	1	41.826	41.326	42.326	0								0	0	0	0.31623	1	15880	15880		24.519	0	1		+		21038	20511	13466	13522	21351	21351					0.029964061904820483
KMAACQLLL	9	Unmodified	_KMAACQLLL_					0	0	0		UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant;UNC80|p.N2032*|1|0.42|ENSG00000144406|chr2:209936855-209936856|-/T|frameshift_variant;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant	UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7767333984375	2	495.777373	989.540194	-0.037853	-1.8767E-05	-1.1602	-0.00057518	-1.198	-0.00059395	495.7767580320443	18.468	0.16711	18.468	18.411	18.578	0					6	3	2	0	0	0	0.18605	1	5686	5686		63.306	3.188	1	337310			21039	4614	13467	13523	21352	21352					0.04500532704469151
KMAFWMSL	8	Unmodified	_KMAFWMSL_					0	0	0		nc|ENSG00000172824|Q5XG92-4|CES4A;ENST00000535543.5_1_16:67034893-67043042:+|nuORF;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A;ENST00000544478.1_1_16:67040601-67043042:+|nuORF;ENST00000543561.1_1_16:67040205-67043042:+|nuORF	nc|ENSG00000172824|Q5XG92-4|CES4A	nc|ENSG00000172824|Q5XG92-4|CES4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.25201416015625	2	507.250991	1012.48743	2.9434	0.001493	-0.81958	-0.00041573	2.1238	0.0010773	507.25063934822737	35.76	0.56366	35.76	35.552	36.115	0					33	11	4	0	0	0	0.25485	1	13820	13820		97.473	9.7184	1	4700900			21040	6387	13468	13524	21353	21353					-0.01831425358341221
KMAGNEYVG	9	Unmodified	_KMAGNEYVG_					0	0	0		ENST00000495444.1_1_2:191785873-191789325:+|nuORF;ENST00000461965.5_1_2:191775005-191792247:+|nuORF;nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS	ENST00000495444.1_1_2:191785873-191789325:+|nuORF	ENST00000495444.1_1_2:191785873-191789325:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7301940917969	2	484.728935	967.443317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.316	1	19.316	18.816	19.816	0								0	0	0	0.22284	1	6085	6085		47.657	5.2612	1				21041	2906	13469	13525	21354	21354					-0.041707382509684976
KMAKELQR	8	Unmodified	_KMAKELQR_					0	0	0		MCPH1|p.T468Pfs*32|2|0.36|ENSG00000147316|chr8:6445118-6445118|A/-|frameshift_variant;nc|ENSG00000147316|Q8NEM0-2|MCPH1;nc|ENSG00000147316|Q8NEM0-3|MCPH1;MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant;ENSG00000147316|ENST00000344683|MCPH1	MCPH1|p.T468Pfs*32|2|0.36|ENSG00000147316|chr8:6445118-6445118|A/-|frameshift_variant	MCPH1|p.T468Pfs*32|2|0.36|ENSG00000147316|chr8:6445118-6445118|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2894287109375	2	502.289494	1002.56443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.672	1	21.672	21.172	22.172	0								0	0	0	1.7419	1	7221	7221		66.429	5.4573	1				21042	4775	13470	13526	21355	21355					0.06325509182352107
KMAKTTKK	8	Unmodified	_KMAKTTKK_					0	0	0			REV__ENST00000427859.5_1_1:239870879-239871044:-|nuORF	REV__ENST00000427859.5_1_1:239870879-239871044:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2880859375	2	468.288963	934.563372	-2.1611	-0.001012	-0.081383	-3.8111E-05	-2.2425	-0.0010501	468.28897058055685	14.453	0.088497	14.453	14.399	14.487	0					8	4	2	0	0	0	0.69548	1	3064	3064		34.173	0.65696	1	37684	+		21043	19128	13471	13527	21356	21356					0.09347294813437657
KMALELDEKQ	10	Unmodified	_KMALELDEKQ_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.81640625	2	602.815738	1203.61692	-1.8925	-0.0011408	1.6233	0.00097857	-0.2692	-0.00016228	602.816423545018	18.8	0.27119	18.8	18.704	18.975	0					9	6	2	0	0	0	0.51765	1	4987	4987		25.126	6.8639	1	98416	+		21044	13198	13472	13528	21357	21357					0.023260027346395873
KMAMRKLTS	9	Oxidation (M)	_KM(Oxidation (M))AMRKLTS_		KM(0.978)AM(0.022)RKLTS		KM(17)AM(-17)RKLTS	0	0	1		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2985229492188	2	541.296462	1080.57837	3.5286	0.00191	-0.06526	-3.5325E-05	3.4633	0.0018747	541.2962821737881	21.324	0.31608	21.324	21.206	21.522	0					15	5	4	0	0	0	0.17854	1	6952	6952		64.207	16.248	2	1121600			21045	3287	13473	13529	21358	21358		141			0.04130418619115517
KMAPPLPL	8	Unmodified	_KMAPPLPL_					0	0	0			REV__ENSG00000111671|ENST00000524270|SPSB2	REV__ENSG00000111671|ENST00000524270|SPSB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.7617492675781	2	433.762049	865.509546	0.70688	0.00030662	-1.7396	-0.00075458	-1.0327	-0.00044796	433.76124125898394	32.249	0.25467	32.249	32.139	32.393	0					16	6	3	0	0	0	0.72892	1	11824	11824		29.842	0	1	205780	+		21046	13975	13474	13530	21359	21359					0.07141122381733567
KMAQGQLKE	9	Unmodified	_KMAQGQLKE_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7791748046875	2	516.778959	1031.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.96	1	14.96	14.46	15.46	0								0	0	0	0.17378	1	3840	3840		54.776	6.8168	1				21047	7579	13475	13531	21360	21360					0.02885499082822207
KMASIWLRLA	10	Unmodified	_KMASIWLRLA_					0	0	0			REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF	REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.85107421875	2	594.849719	1187.68488	1.4277	0.00084924	0.34183	0.00020334	1.7695	0.0010526	594.8499879719852	28.199	0.21157	28.199	28.096	28.308	0					6	4	2	0	0	0	0.46215	1	10293	10293		49.442	49.442	1	295940	+		21048	13121	13476	13532	21361	21361					0.09854917175971423
KMAVKNLTR	9	Unmodified	_KMAVKNLTR_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1;REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__ENSG00000181789|ENST00000314797|COPG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.8184814453125	2	530.818418	1059.62228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.165	1	17.165	16.665	17.665	0								0	0	0	0.2591	1	4224	4224		42.396	0.96952	1		+		21049	16856;15688	13477	13533	21362	21362					0.09485771107756591
KMCTSTCSLK	10	Carbamidomethyl (C),Oxidation (M)	_KM(Oxidation (M))CTSTC(Carbamidomethyl (C))SLK_	KMC(0.003)TSTC(0.997)SLK	KM(1)CTSTCSLK	KMC(-26)TSTC(26)SLK	KM(40)CTSTCSLK	0	1	1		ENST00000416202.5_1_22:46452795-46453064:+|nuORF	ENST00000416202.5_1_22:46452795-46453064:+|nuORF	ENST00000416202.5_1_22:46452795-46453064:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	587.765380859375	2	587.766877	1173.5192	0.24203	0.00014226	-3.835	-0.0022541	-3.593	-0.0021118	587.7645580880231	26.134	0.11394	26.134	26.079	26.193	0					5	4	2	0	0	0	0.54861	1	7907	7907		40.058	8.4239	2	36533			21050	9357	13478	13534	21363	21363	388	377			-0.06061845457384152
KMDRVNTVVY	10	Unmodified	_KMDRVNTVVY_					0	0	0			REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.8233032226562	2	612.823898	1223.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.747	1	35.747	35.247	36.247	0								0	0	0	0.33107	1	12754	12754		45.972	0.95004	1		+		21051	21993	13479	13535	21364	21364					0.03037128691403268
KMEARREEQ	9	Unmodified	_KMEARREEQ_					0	0	0			REV__ENSG00000183255|ENST00000330938|PTTG1IP	REV__ENSG00000183255|ENST00000330938|PTTG1IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7958984375	2	588.793129	1175.5717	1.4643	0.00086216	0.71325	0.00041996	2.1775	0.0012821	588.7937433772564	41.51	0.62259	41.51	41.317	41.94	0					85	26	6	0	0	0	0.56424	1	16269	16269		25.574	0.44807	1	8767900	+		21052	16923	13480	13536	21365	21365					-0.009058030078904267
KMEKTGISL	9	Unmodified	_KMEKTGISL_					0	0	0			REV__ENST00000304004.7_1_6:43487543-43487827:+|nuORF	REV__ENST00000304004.7_1_6:43487543-43487827:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.78350830078125	2	503.78371	1005.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.871	1	27.871	27.371	28.371	0								0	0	0	0.17378	1	8644	8644		54.776	10.399	1		+		21053	18227	13481	13537	21366	21366					0.05031267368360659
KMEPNNTIGL	10	Unmodified	_KMEPNNTIGL_					0	0	0			REV__ENSG00000187612|ENST00000344514|OR5W2	REV__ENSG00000187612|ENST00000344514|OR5W2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7898559570312	2	558.789524	1115.56449	1.2892	0.0007204	-0.63302	-0.00035372	0.6562	0.00036668	558.7890901008179	18.389	0.2234	18.389	18.279	18.503	0					21	9	3	0	0	0	0.52275	1	4547	4547		42.864	5.0528	1	262020	+		21054	17127	13482	13538	21367	21367					0.011334643916825371
KMEPNNTIGL	10	Unmodified	_KMEPNNTIGL_					0	0	0			REV__ENSG00000187612|ENST00000344514|OR5W2	REV__ENSG00000187612|ENST00000344514|OR5W2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7899780273438	2	558.789524	1115.56449	1.7583	0.0009825	-1.0711	-0.00059852	0.68717	0.00038398	558.7889647274528	18.603	0.21774	18.603	18.493	18.711	0					12	4	4	0	0	0	0.3337	1	5751	5751		63.534	7.1001	1	795010	+		21055	17127	13482	13538	21368	21368					0.011334643916825371
KMEPNNTIGL	10	Unmodified	_KMEPNNTIGL_					0	0	0			REV__ENSG00000187612|ENST00000344514|OR5W2	REV__ENSG00000187612|ENST00000344514|OR5W2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7898559570312	2	558.789524	1115.56449	-0.81792	-0.00045705	1.3012	0.00072712	0.48331	0.00027007	558.7903469668541	18.448	0.21521	18.448	18.363	18.578	0					17	6	4	0	0	0	0.2978	1	4801	4801		67.494	17.958	1	292360	+		21056	17127	13482	13538	21369	21369					0.011334643916825371
KMERPGRR	8	Unmodified	_KMERPGRR_					0	0	0		ENST00000431844.6_1_2:113993137-113993445:+|nuORF	ENST00000431844.6_1_2:113993137-113993445:+|nuORF	ENST00000431844.6_1_2:113993137-113993445:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2882690429688	2	515.290359	1028.56617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.667	1	18.667	18.167	19.167	0								0	0	0	1.7419	1	4916	4916		47.657	8.4045	1				21057	9504	13483	13539	21370	21370					0.05302562990959814
KMFLGTGLL	9	Unmodified	_KMFLGTGLL_					0	0	0			REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.285400390625	2	490.285889	978.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.414	1	32.414	31.914	32.914	0								0	0	0	0.28996	1	12317	12317		37.159	1.5408	1		+		21058	12681	13484	13540	21371	21371					0.0670877658194513
KMFQDFLL	8	Unmodified	_KMFQDFLL_					0	0	0			REV__ENSG00000159445|ENST00000368814|THEM4	REV__ENSG00000159445|ENST00000368814|THEM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.276611328125	2	521.275521	1040.53649	1.0393	0.00054174	0.083981	4.3777E-05	1.1232	0.00058552	521.2755325165101	36.18	0.16348	36.18	36.067	36.231	0					7	5	2	0	0	0	0.66989	1	12943	12943		27.882	0	1	67310	+		21059	15716	13485	13541	21372	21372					0.017841862022578425
KMFQSKCVK	9	Oxidation (M)	_KM(Oxidation (M))FQSKCVK_		KM(1)FQSKCVK		KM(75)FQSKCVK	0	0	1			REV__ENST00000479727.1_1_1:224585697-224586694:-|nuORF	REV__ENST00000479727.1_1_1:224585697-224586694:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.1973571777344	3	372.196434	1113.56747	3.2132	0.0011959	-0.40317	-0.00015006	2.81	0.0010459	372.1962616209528	28.083	1.0151	28.083	27.926	28.941	0					32	20	3	0	0	0	0.11898	1	10121	10121		75.043	6.2565	1	3420800	+		21060	19577	13486	13542	21373	21373		717			0.01523016244846076
KMGRGKHFIG	10	Unmodified	_KMGRGKHFIG_					0	0	0		ENST00000592188.1_1_19:19387459-19391209:-|nuORF;ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1	ENST00000592188.1_1_19:19387459-19391209:-|nuORF	ENST00000592188.1_1_19:19387459-19391209:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.54620361328125	3	377.546566	1129.61787	0.2419	9.1327E-05	-1.2302	-0.00046446	-0.98831	-0.00037313	377.5460073339582	35.982	0.39304	35.982	35.818	36.211	0					22	10	3	0	0	0	0.70274	1	13505	13505		21.686	0.8486	1	257020			21061	2389	13487	13543	21374	21374					0.058243066848490344
KMGRPFPVEGT	11	Unmodified	_KMGRPFPVEGT_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.8204345703125	2	609.818615	1217.62268	2.9292	0.0017863	-0.44156	-0.00026927	2.4877	0.001517	609.8187528510549	27.566	0.77427	27.566	27.12	27.894	0					43	15	5	0	0	0	0.11858	1	9832	9832		85.161	8.3867	1	2229900	+		21062	12696	13488	13544	21375	21375					0.022571460369590568
KMIGGLLEL	9	Unmodified	_KMIGGLLEL_					0	0	0			REV__ENST00000527564.1_1_4:102269974-102270022:+|nuORF	REV__ENST00000527564.1_1_4:102269974-102270022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.29156494140625	2	487.291171	972.567789	0.81107	0.00039523	-1.6172	-0.00078802	-0.80608	-0.0003928	487.29048750287535	45.752	0.10206	45.752	45.726	45.828	0					7	4	2	0	0	0	0.12239	1	18339	18339		74.255	12.148	1	37087	+		21063	20012	13489	13545	21376	21376					0.0804075923633718
KMILSPHYL	9	Unmodified	_KMILSPHYL_					0	0	0		ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.3114013671875	2	551.309895	1100.60524	0.13838	7.6293E-05	0.43664	0.00024073	0.57503	0.00031702	551.8104896249072	35.131	0.22922	35.131	35.052	35.281	0					9	6	2	0	0	0	0.54081	1	13601	13601		27.882	9.5578	1	56788			21064	9776	13490	13546	21377	21377					0.05895850501951827
KMISEYFK	8	Unmodified	_KMISEYFK_					0	0	0			REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF	REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2756958007812	2	523.272978	1044.5314	1.7051	0.00089222	3.638	0.0019037	5.3431	0.0027959	523.2749419827292	20.156	0.19378	20.156	20.064	20.258	0					10	4	3	0	0	0	0.46905	1	6216	6216		63.306	2.3343	1	390230	+		21065	12735	13491	13547	21378	21378					0.01091882339642325
KMITSVMSR	9	Unmodified	_KMITSVMSR_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7832641601562	2	526.783187	1051.55182	0.63407	0.00033402	-0.44894	-0.00023649	0.18513	9.7526E-05	526.7830794710886	26.713	0.26499	26.713	26.603	26.868	0					11	5	3	0	0	0	0.35021	1	9482	9482		45.972	0	1	337370	+		21066	14122	13492	13548	21379	21379					0.028107297278211263
KMKEEVKAVK	10	Unmodified	_KMKEEVKAVK_					0	0	0			REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant	REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.2386169433594	3	397.237286	1188.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.275	1	15.275	14.775	15.775	0								0	0	0	0.38879	1	4143	4143		33.922	1.1711	1		+		21067	14309	13493	13549	21380	21380					0.10323176247902666
KMKKRLRPT	9	Oxidation (M)	_KM(Oxidation (M))KKRLRPT_		KM(1)KKRLRPT		KM(59)KKRLRPT	0	0	1			REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.3646240234375	2	587.366067	1172.71758	0.11693	6.8678E-05	-3.3866	-0.0019892	-3.2697	-0.0019205	587.3641430118089	31.847	0.13544	31.847	31.764	31.899	0					5	3	2	0	0	0	0.22377	1	11648	11648		58.782	30.9	1	81502	+		21068	19381	13494	13550	21381	21381		712			0.13813124298803814
KMKKTMTSI	9	Unmodified	_KMKKTMTSI_					0	0	0			REV__ENST00000428729.1_1_6:3045620-3046031:+|nuORF	REV__ENST00000428729.1_1_6:3045620-3046031:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.3030395507812	2	534.301213	1066.58787	0.51006	0.00027252	3.0677	0.0016391	3.5777	0.0019116	534.3029221109799	21.096	0.15615	21.096	21.017	21.173	0					6	4	2	0	0	0	0.37197	1	5761	5761		44.117	3.3386	1	81277	+		21069	19138	13495	13551	21382	21382					0.05724186904672024
KMKMLGPFT	9	Unmodified	_KMKMLGPFT_					0	0	0		TMEM200A|p.F288Lfs*5|1|0.36|ENSG00000164484|chr6:130441283-130441283|T/-|frameshift_variant;ENSG00000164484|ENST00000296978|TMEM200A	TMEM200A|p.F288Lfs*5|1|0.36|ENSG00000164484|chr6:130441283-130441283|T/-|frameshift_variant	TMEM200A|p.F288Lfs*5|1|0.36|ENSG00000164484|chr6:130441283-130441283|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7847900390625	2	526.785198	1051.55584	2.0203	0.0010642	-4.3421	-0.0022873	-2.3218	-0.0012231	526.7830379019068	26.766	0.18997	26.766	26.685	26.875	0					10	4	3	0	0	0	0.20551	1	9269	9269		60.972	4.3397	1	265830			21070	5695	13496	13552	21383	21383					0.03212819221516838
KMKNKRFP	8	Unmodified	_KMKNKRFP_					0	0	0			REV__NEK5|p.E460K|2|0.21|ENSG00000197168|chr13:52087352-52087352|C/T|missense_variant	REV__NEK5|p.E460K|2|0.21|ENSG00000197168|chr13:52087352-52087352|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8085327148438	2	524.807854	1047.60115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.313	1	42.313	41.813	42.813	0								0	0	0	1.7419	1	16037	16037		28.254	0.37203	1		+		21071	21282	13497	13553	21384	21384					0.07925805798913643
KMKPFPVK	8	Unmodified	_KMKPFPVK_					0	0	0			REV__AHNAK|p.T5657P|1|0.15|ENSG00000124942|chr11:62517448-62517448|T/G|missense_variant	REV__AHNAK|p.T5657P|1|0.15|ENSG00000124942|chr11:62517448-62517448|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7974853515625	2	487.796423	973.578294	3.5071	0.0017107	-1.2071	-0.00058883	2.2999	0.0011219	487.79585130262313	20.905	0.20653	20.905	20.846	21.053	0					11	6	3	0	0	0	0.41952	1	5924	5924		68.485	68.485	1	390330	+		21072	12118	13498	13554	21385	21385					0.09044786681442929
KMKVFCEVL	9	Unmodified	_KMKVFCEVL_					0	0	0		ENST00000561073.1_1_15:101116892-101121059:-|nuORF;ENST00000559149.5_1_15:101113500-101121059:-|nuORF	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7986450195312	2	548.798306	1095.58206	-1.5049	-0.00082587	1.9953	0.001095	0.49042	0.00026914	548.7994968080441	25.121	0.18136	25.121	25.029	25.21	0					10	4	3	0	0	0	0.2873	1	7950	7950		51.335	1.8939	1	196590			21073	10677	13499	13555	21386	21386					0.038090883929953634
KMLEVLVVK	9	Unmodified	_KMLEVLVVK_					0	0	0		nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8358154296875	2	529.835746	1057.65694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.573	1	34.573	34.073	35.073	0								0	0	0	0.084509	1	13337	13337		76.17	17.94	1				21074	4486	13500	13556	21387	21387					0.13041594195874495
KMLIIQYIS	9	Unmodified	_KMLIIQYIS_					0	0	0			REV__ENST00000556551.2_1_14:74325599-74340738:+|nuORF	REV__ENST00000556551.2_1_14:74325599-74340738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8275756835938	2	554.825378	1107.6362	3.5829	0.0019879	0.30321	0.00016823	3.8862	0.0021561	554.825648534256	27.399	0.4739	27.399	27.272	27.746	0					25	9	4	0	0	0	0.47038	1	9805	9805		35.618	1.4457	1	870550	+		21075	20254	13501	13557	21388	21388					0.08669003816203258
KMLINFLSKN	10	Unmodified	_KMLINFLSKN_					0	0	0		nc|ENSG00000213439|P0C628|OR5AC1	nc|ENSG00000213439|P0C628|OR5AC1	nc|ENSG00000213439|P0C628|OR5AC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.3489379882812	2	604.347009	1206.67946	3.0253	0.0018283	0.2679	0.0001619	3.2932	0.0019902	604.3471107327717	17.555	0.16782	17.555	17.447	17.615	0					7	3	3	0	0	0	0.1998	1	5096	5096		49.536	17.581	1	960570			21076	11758	13502	13558	21389	21389					0.08439193593494565
KMLKEKMQ	8	Unmodified	_KMLKEKMQ_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2871704101562	2	518.288105	1034.56166	1.5762	0.00081692	-4.129	-0.00214	-2.5528	-0.0013231	518.2865660069066	42.479	0.26148	42.479	42.372	42.634	0					10	7	2	0	0	0	0.48092	1	16965	16965		62.107	7.3311	1	86000			21077	6707	13503	13559	21390	21390					0.04575917733177448
KMLQAFADKN	10	Unmodified	_KMLQAFADKN_					0	0	0			REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant	REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.3047485351562	2	583.305341	1164.59613	1.2717	0.0007418	-3.5609	-0.0020771	-2.2892	-0.0013353	583.3034155136339	31.698	0.29856	31.698	31.613	31.911	0					12	7	3	0	0	0	0.46128	1	11580	11580		49.536	1.5765	1	135770	+		21078	12438	13504	13560	21391	21391					0.020414571456285557
KMLQAFADKN	10	Unmodified	_KMLQAFADKN_					0	0	0			REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant	REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.30322265625	2	583.305341	1164.59613	-0.21525	-0.00012556	-1.8975	-0.0011068	-2.1127	-0.0012324	583.3041887655462	31.489	0.16456	31.489	31.426	31.591	0					10	6	2	0	0	0	0.48965	1	10439	10439		46.457	17.287	1	58751	+		21079	12438	13504	13560	21392	21392					0.020414571456285557
KMLTKRSI	8	Oxidation (M)	_KM(Oxidation (M))LTKRSI_		KM(1)LTKRSI		KM(48)LTKRSI	0	0	1			REV__ATAD5|p.K421Sfs*17|1|0.35|ENSG00000176208|chr17:30835339-30835339|A/-|frameshift_variant	REV__ATAD5|p.K421Sfs*17|1|0.35|ENSG00000176208|chr17:30835339-30835339|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7981262207031	2	496.799694	991.584836	-2.3266	-0.0011559	-1.1351	-0.00056393	-3.4617	-0.0017198	496.7992230299193	28.961	0.27431	28.961	28.867	29.141	0					16	7	4	0	0	0	0.60719	1	9690	9690		47.916	9.1095	1	406190	+		21080	12241	13505	13561	21393	21393		473			0.08870679842164009
KMLVMRERK	9	Unmodified	_KMLVMRERK_					0	0	0			REV__KIF22|p.E491Nfs*36|1|0.17|ENSG00000079616|chr16:29803465-29803465|A/-|frameshift_variant	REV__KIF22|p.E491Nfs*36|1|0.17|ENSG00000079616|chr16:29803465-29803465|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.8486328125	2	595.846653	1189.67875	3.1681	0.0018877	0.32397	0.00019304	3.4921	0.0020807	595.8468803318289	14.432	0.21667	14.432	14.375	14.592	0					7	4	3	0	0	0	0.19605	1	3601	3601		62.107	62.107	1	648230	+		21081	13285	13506	13562	21394	21394					0.09150075672778257
KMMKRLKE	8	Unmodified	_KMMKRLKE_					0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.3111572265625	2	532.309372	1062.60419	3.409	0.0018146	0.18819	0.00010017	3.5972	0.0019148	532.30945450133	24.654	0.25751	24.654	24.547	24.805	0					15	5	4	0	0	0	0.27512	1	8539	8539		90.777	8.5361	1	2973200	+		21082	14329	13507	13563	21395	21395					0.07539312861422331
KMMLEWRM	8	Oxidation (M)	_KMM(Oxidation (M))LEWRM_		KMM(1)LEWRM		KM(-35)M(35)LEWRM(-84)	0	0	1			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7755126953125	2	570.771765	1139.52898	3.4126	0.0019478	2.1653	0.0012359	5.5779	0.0031837	570.7733865390825	38.424	0.54266	38.424	38.235	38.778	0					32	11	5	0	0	0	0.25873	1	15082	15082		96.19	19.416	3	1116000	+		21083	17543	13508	13564	21396	21396		663			-0.035206126613275046
KMMLQHPGQ	9	Oxidation (M)	_KMM(Oxidation (M))LQHPGQ_		KM(0.006)M(0.994)LQHPGQ		KM(-22)M(22)LQHPGQ	0	0	1		ENST00000465155.5_1_1:212782186-212791588:+|nuORF	ENST00000465155.5_1_1:212782186-212791588:+|nuORF	ENST00000465155.5_1_1:212782186-212791588:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.267333984375	2	543.265161	1084.51577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.637	1	23.637	23.137	24.137	0								0	0	0	0.24724	1	6868	6868		44.117	8.9161	2				21084	9772	13509	13565	21397	21397		392			-0.023107274490484997
KMMSSSPPPR	10	Unmodified	_KMMSSSPPPR_					0	0	0			REV__ENST00000453491.2_1_10:118594744-118609115:-|nuORF	REV__ENST00000453491.2_1_10:118594744-118609115:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2809448242188	2	559.278269	1116.54198	1.4077	0.00078727	2.6268	0.0014691	4.0345	0.0022564	559.2802090615422	33.948	0.25902	33.948	33.859	34.118	0					6	5	2	0	0	0	0.39827	1	12981	12981		56.434	6.8977	1	68153	+		21085	19331	13510	13566	21398	21398					-0.011624582775766612
KMMYENTTTG	10	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))YENTTTG_		KM(1)M(1)YENTTTG		KM(80)M(80)YENTTTG	0	0	2		ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENST00000538600.1_1_12:6631091-6632090:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.25439453125	2	604.252114	1206.48967	3.0265	0.0018288	0.76147	0.00046012	3.788	0.0022889	604.2525019665885	42.809	0.45918	42.809	42.687	43.146	0					32	13	4	0	0	0	0.19191	1	17095	17095		80.455	19.483	1	1611300			21086	10513	13511	13567	21399	21399		420;421			-0.10531086201854123
KMNKMKFK	8	2 Oxidation (M)	_KM(Oxidation (M))NKM(Oxidation (M))KFK_		KM(1)NKM(1)KFK		KM(92)NKM(92)KFK	0	0	2		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.79541015625	2	543.793555	1085.57256	1.9927	0.0010836	0.71415	0.00038835	2.7069	0.001472	543.7939775487625	30.482	2.7945	30.482	30.131	32.926	0					126	56	5	0	0	0	0.27084	1	11636	11636		92.191	9.8856	1	97565000			21087	5571	13512	13568	21400	21400		224;225			0.03319320107470958
KMNMLLKN	8	Unmodified	_KMNMLLKN_					0	0	0			REV__MAP9|p.D594Ifs*82|1|0.15|ENSG00000164114|chr4:155352638-155352638|T/-|frameshift_variant	REV__MAP9|p.D594Ifs*82|1|0.15|ENSG00000164114|chr4:155352638-155352638|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.273681640625	2	496.274998	990.535443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.889	1	13.889	13.389	14.389	0								0	0	0	1.7419	1	2920	2920		42.474	1.6963	1		+		21088	20863	13513	13569	21401	21401					0.03979648561698923
KMNTVRAK	8	Oxidation (M)	_KM(Oxidation (M))NTVRAK_		KM(1)NTVRAK		KM(44)NTVRAK	0	0	1			REV__LRRC37A3|p.K1304Nfs*11|2|0.36|ENSG00000176809|chr17:64860234-64860234|T/-|frameshift_variant	REV__LRRC37A3|p.K1304Nfs*11|2|0.36|ENSG00000176809|chr17:64860234-64860234|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2745056152344	2	482.273844	962.533135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.626	1	13.626	13.126	14.126	0								0	0	0	1.7419	1	3142	3142		44.117	6.9577	1		+		21089	16671	13514	13570	21402	21402		635			0.050369361482580643
KMPIIGCKIQ	10	Carbamidomethyl (C),Oxidation (M)	_KM(Oxidation (M))PIIGC(Carbamidomethyl (C))KIQ_	KMPIIGC(1)KIQ	KM(1)PIIGCKIQ	KMPIIGC(48)KIQ	KM(48)PIIGCKIQ	0	1	1		SGPL1|p.R86C|1|0.28|ENSG00000166224|chr10:70851205-70851205|C/T|missense_variant	SGPL1|p.R86C|1|0.28|ENSG00000166224|chr10:70851205-70851205|C/T|missense_variant	SGPL1|p.R86C|1|0.28|ENSG00000166224|chr10:70851205-70851205|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.33251953125	2	602.333044	1202.65154	-0.58742	-0.00035382	0.295	0.00017769	-0.29242	-0.00017614	602.3331346997655	31.426	0.29178	31.426	31.324	31.616	0					31	11	4	0	0	0	0.47859	1	10385	10385		47.657	47.657	1	1058000			21090	22390	13515	13571	21403	21403	751	810			0.05831547341745136
KMPKINMSGPK	11	Unmodified	_KMPKINMSGPK_					0	0	0		AHNAK|p.H5029N|1|0.21|ENSG00000124942|chr11:62519332-62519332|G/T|missense_variant	AHNAK|p.H5029N|1|0.21|ENSG00000124942|chr11:62519332-62519332|G/T|missense_variant	AHNAK|p.H5029N|1|0.21|ENSG00000124942|chr11:62519332-62519332|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	615.8381958007812	2	615.838494	1229.66243	0.16844	0.00010373	-0.87841	-0.00054096	-0.70997	-0.00043723	615.8378099356975	22.354	0.12514	22.354	22.27	22.396	0					6	3	2	0	0	0	0.42065	1	6314	6314		50.034	0.59196	1	163700			21091	100	13516	13572	21404	21404					0.05678949716025272
KMPKPKPPPN	10	Unmodified	_KMPKPKPPPN_					0	0	0		ENSG00000112237|ENST00000520429|CCNC;ENST00000326298.8_1_6:99991433-99997239:-|nuORF;nc|ENSG00000112237|P24863-2|CCNC	ENSG00000112237|ENST00000520429|CCNC	ENSG00000112237|ENST00000520429|CCNC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3306884765625	2	567.328619	1132.64269	3.4706	0.001969	0.32637	0.00018516	3.797	0.0021541	567.3287130829972	50.964	0.70397	50.964	50.657	51.361	0					71	41	2	0	0	0	0.60076	1	20069	20069		34.173	13.691	1	185580			21092	2724	13517	13573	21405	21405					0.08166941767581193
KMQAQKSR	8	Unmodified	_KMQAQKSR_					0	0	0			REV__ENSG00000165182|ENST00000379211|CXorf58	REV__ENSG00000165182|ENST00000379211|CXorf58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7710876464844	2	488.771468	975.528384	0.61516	0.00030067	-1.1941	-0.00058364	-0.57895	-0.00028297	488.7708442555864	12.23	0.25937	12.23	12.18	12.439	0					9	6	2	0	0	0	0.32815	1	2716	2716		79.451	10.664	1	280250	+		21093	16028	13518	13574	21406	21406					0.03964052005494523
KMQCQKGI	8	Carbamidomethyl (C)	_KMQC(Carbamidomethyl (C))QKGI_	KMQC(1)QKGI		KMQC(52)QKGI		0	1	0		TBC1D10C|p.R90Q|1|0.22|ENSG00000175463|chr11:67405415-67405415|G/A|missense_variant	TBC1D10C|p.R90Q|1|0.22|ENSG00000175463|chr11:67405415-67405415|G/A|missense_variant	TBC1D10C|p.R90Q|1|0.22|ENSG00000175463|chr11:67405415-67405415|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.75701904296875	2	496.75443	991.494306	0.75618	0.00037564	3.1382	0.0015589	3.8944	0.0019345	496.7560820617369	44.917	0.1563	44.917	44.861	45.018	0					11	8	2	0	0	0	0.57802	1	17429	17429		52.299	6.3472	1	49376			21094	22514	13519	13575	21407	21407	755				-0.0017811247776080563
KMRALEEEKGK	11	Oxidation (M)	_KM(Oxidation (M))RALEEEKGK_		KM(1)RALEEEKGK		KM(47)RALEEEKGK	0	0	1		CCDC73|p.C99R|1|0.1|ENSG00000186714|chr11:32700811-32700811|A/G|missense_variant	CCDC73|p.C99R|1|0.1|ENSG00000186714|chr11:32700811-32700811|A/G|missense_variant	CCDC73|p.C99R|1|0.1|ENSG00000186714|chr11:32700811-32700811|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.57476806640625	3	445.574738	1333.70238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.696	1	19.696	19.196	20.196	0								0	0	0	0.33523	1	5989	5989		47.228	10.7	1				21095	412	13520	13576	21408	21408		22			0.04888167920285014
KMRMAKKK	8	Oxidation (M)	_KMRM(Oxidation (M))AKKK_		KM(0.04)RM(0.96)AKKK		KM(-14)RM(14)AKKK	0	0	1		TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant	TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant	TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.873291015625	3	346.208785	1035.60453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.366	1	17.366	16.866	17.866	0								0	0	0	1.7419	1	4314	4314		49.442	11.933	2				21096	23069	13521	13577	21409	21409		830			0.08814732581276985
KMRQMWNNK	9	Oxidation (M)	_KMRQM(Oxidation (M))WNNK_		KM(0.002)RQM(0.998)WNNK		KM(-28)RQM(28)WNNK	0	0	1		ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant;ADAMTSL3|p.F1172Yfs*20|1|0.12|ENSG00000156218|chr15:83983142-83983143|-/A|frameshift_variant;ADAMTSL3|p.R1207Gfs*32|1|0.3|ENSG00000156218|chr15:83983243-83983243|A/-|frameshift_variant;ADAMTSL3|p.H1300Ifs*18|1|0.33|ENSG00000156218|chr15:83991138-83991138|C/-|frameshift_variant;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.3074951171875	2	626.307892	1250.60123	-0.52545	-0.00032909	0.060171	3.7685E-05	-0.46528	-0.00029141	626.3079609130428	16.149	0.26978	16.149	16.064	16.334	0					14	6	4	0	0	0	0.05357	1	4310	4310		94.006	13.552	2	1218700			21097	63	13522	13578	21410	21410		3			-0.014045622634057509
KMRRRCFPL	9	Unmodified	_KMRRRCFPL_					0	0	0			REV__nc|ENSG00000109670|Q969H0-4|FBXW7	REV__nc|ENSG00000109670|Q969H0-4|FBXW7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	603.8389282226562	2	603.839162	1205.66377	-0.38463	-0.00023226	-0.40278	-0.00024322	-0.78742	-0.00047547	603.838878658571	28.147	0.17611	28.147	28.032	28.208	0					8	4	2	0	0	0	0.46194	1	9932	9932		37.159	16.212	1	194580	+		21098	20971	13523	13579	21411	21411					0.06916628595467955
KMRSDLLLE	9	Unmodified	_KMRSDLLLE_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.830810546875	2	552.807716	1103.60088	1.1438	0.00063233	-0.0033365	-1.8444E-06	1.1405	0.00063048	552.8076860522135	17.273	0.08902	17.273	17.227	17.316	0					4	2	2	0	0	0	0.22377	1	4283	4283		58.782	9.3404	1	31885			21099	3852	13524	13580	21412	21412					0.05322341288433563
KMRVCISK	8	Carbamidomethyl (C),Oxidation (M)	_KM(Oxidation (M))RVC(Carbamidomethyl (C))ISK_	KMRVC(1)ISK	KM(1)RVCISK	KMRVC(69)ISK	KM(69)RVCISK	0	1	1		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2848510742188	2	519.283354	1036.55216	3.3541	0.0017417	-0.22321	-0.00011591	3.1309	0.0016258	519.2831940030526	22.663	0.26624	22.663	22.555	22.822	0					9	5	2	0	0	0	0.41701	1	7580	7580		68.787	68.787	1	5568900			21100	7842	13525	13581	21413	21413	338	316			0.03534149447659729
KMSEIQEK	8	Unmodified	_KMSEIQEK_					0	0	0			REV__NLRP10|p.M552I|1|0.39|ENSG00000182261|chr11:7959956-7959956|C/A|missense_variant	REV__NLRP10|p.M552I|1|0.39|ENSG00000182261|chr11:7959956-7959956|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2557373046875	2	496.757692	991.500831	-0.69675	-0.00034612	0.59542	0.00029578	-0.10133	-5.0337E-05	496.7586891411825	34.833	1.019	34.833	34.635	35.654	0					71	20	8	0	0	0	0.58597	1	13355	13355		51.335	5.3632	1	30752000	+		21101	21293	13526	13582	21414	21414					0.004741039546047432
KMSLKGTTVT	10	Oxidation (M)	_KM(Oxidation (M))SLKGTTVT_		KM(1)SLKGTTVT		KM(55)SLKGTTVT	0	0	1		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.29833984375	2	541.299724	1080.5849	0.31171	0.00016873	-2.6238	-0.0014203	-2.3121	-0.0012515	541.298399100491	21.349	0.1665	21.349	21.24	21.407	0					8	3	3	0	0	0	0.41384	1	7078	7078		54.722	9.7001	1	433360			21102	3659	13527	13583	21415	21415		153			0.04782635051492434
KMSRICINI	9	Unmodified	_KMSRICINI_					0	0	0		ENST00000414386.5_1_6:41491709-41491922:-|nuORF	ENST00000414386.5_1_6:41491709-41491922:-|nuORF	ENST00000414386.5_1_6:41491709-41491922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3006591796875	2	539.299004	1076.58346	3.4269	0.0018481	0.13411	7.2325E-05	3.561	0.0019204	539.2990042508673	33.761	0.56821	33.761	33.566	34.134	0					37	12	4	0	0	0	0.02953	1	12858	12858		82.241	82.241	1	15121000			21103	9339	13528	13584	21416	21416					0.048227224817310343
KMTARPGDR	9	Unmodified	_KMTARPGDR_					0	0	0			REV__ENSG00000239713|ENST00000407997|APOBEC3G	REV__ENSG00000239713|ENST00000407997|APOBEC3G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2720947265625	2	516.274375	1030.5342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.009	1	25.009	24.509	25.509	0								0	0	0	0.1633	1	8822	8822		56.721	1.9447	1		+		21104	17674	13529	13585	21417	21417					0.020151505171725148
KMTMNDIIM	9	Oxidation (M)	_KMTMNDIIM(Oxidation (M))_		KMTMNDIIM(1)		KM(-50)TM(-40)NDIIM(40)	0	0	1			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.7642211914062	2	556.761063	1111.50757	3.5162	0.0019577	1.4594	0.00081252	4.9756	0.0027702	556.7621611582302	38.72	0.45503	38.72	38.56	39.015	0					13	9	3	0	0	0	0.28897	1	15260	15260		51.193	8.7182	3	196830	+		21105	15839	13530	13586	21418	21418		605			-0.043720424807133895
KMTVERPSR	9	Unmodified	_KMTVERPSR_					0	0	0			REV__nc|ENSG00000163554|P02549-2|SPTA1	REV__nc|ENSG00000163554|P02549-2|SPTA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.3015747070312	2	552.303133	1102.59171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.119	1	25.119	24.619	25.619	0								0	0	0	0.18645	1	7773	7773		52.937	6.9645	1		+		21106	15893	13531	13587	21419	21419					0.044519927227156586
KMTVMEAVD	9	Unmodified	_KMTVMEAVD_					0	0	0		nc|ENSG00000100253|Q9UGB7-2|MIOX;ENSG00000100253|ENST00000216075|MIOX	nc|ENSG00000100253|Q9UGB7-2|MIOX	nc|ENSG00000100253|Q9UGB7-2|MIOX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2463989257812	2	512.246103	1022.47765	1.2511	0.00064085	-0.66152	-0.00033886	0.58955	0.000302	512.2457543852153	14.738	0.26382	14.738	14.63	14.893	0					15	5	4	0	0	0	0.36892	1	3874	3874		44.377	5.571	1	1316900			21107	1990	13532	13588	21420	21420					-0.03268658154388504
KMVKEDKIE	9	Unmodified	_KMVKEDKIE_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.3121337890625	2	560.307549	1118.60055	1.8003	0.0010087	3.29	0.0018434	5.0903	0.0028521	560.3107350426025	39.839	0.46818	39.839	39.65	40.118	0					30	16	3	0	0	0	0.25761	1	15697	15697		39.253	0	1	239490			21108	2660	13533	13589	21421	21421					0.045989215685494855
KMVKHIRI	8	Unmodified	_KMVKHIRI_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.823974609375	2	512.826047	1023.63754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.105	1	42.105	41.605	42.605	0								0	0	0	1.7419	1	16783	16783		50.025	2.3672	1		+		21109	12995	13534	13590	21422	21422					0.12666682695612508
KMVRFRIVVR	10	Unmodified	_KMVRFRIVVR_					0	0	0		ENST00000533778.6_1_11:125496395-125496497:+|nuORF	ENST00000533778.6_1_11:125496395-125496497:+|nuORF	ENST00000533778.6_1_11:125496395-125496497:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	652.4111328125	2	652.410809	1302.80707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.424	1	46.424	45.924	46.924	0								0	0	0	0.4201	1	17844	17844		15.642	0.77694	1				21110	10465	13535	13591	21423	21423					0.1677737897816769
KMVSMMEGVI	10	Unmodified	_KMVSMMEGVI_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.780029296875	2	562.779256	1123.54396	3.4696	0.0019526	-1.768	-0.000995	1.7016	0.0009576	562.7775956199291	44.876	0.1825	44.876	44.807	44.989	0					11	7	2	0	0	0	0.60076	1	18008	18008		34.173	3.6689	1	44244			21111	3640	13536	13592	21424	21424					-0.012871655839717278
KMVTLHRM	8	Unmodified	_KMVTLHRM_					0	0	0		ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	ENST00000562200.5_1_16:70543798-70557434:-|nuORF	ENST00000562200.5_1_16:70543798-70557434:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.28033447265625	2	508.280615	1014.54668	-0.10552	-5.3635E-05	-0.37574	-0.00019098	-0.48127	-0.00024462	508.280502703709	18.954	0.16749	18.954	18.846	19.014	0					7	3	3	0	0	0	0.63077	1	5783	5783		44.117	2.6902	1	350260			21112	2210	13537	13593	21425	21425					0.03998470655847086
KMWLGYIY	8	Unmodified	_KMWLGYIY_					0	0	0			REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2794799804688	2	537.278063	1072.54157	3.3437	0.0017965	-0.62978	-0.00033836	2.714	0.0014581	537.2777510971847	41.351	0.33898	41.351	41.256	41.595	0					19	8	4	0	0	0	0.4434	1	16449	16449		65.897	5.6035	1	773630	+		21113	13103	13538	13594	21426	21426					0.008204900648706825
KMYGGDTSSI	10	Unmodified	_KMYGGDTSSI_					0	0	0			REV__ENSG00000255274|ENST00000689828|SMIM35	REV__ENSG00000255274|ENST00000689828|SMIM35	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7476196289062	2	529.744782	1057.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.258	1	28.258	27.758	28.758	0								0	0	0	0.10088	1	10215	10215		79.713	0.26157	1		+		21114	17753	13539	13595	21427	21427					-0.05142790287686694
KMYLVCMFV	9	Carbamidomethyl (C)	_KMYLVC(Carbamidomethyl (C))MFV_	KMYLVC(1)MFV		KMYLVC(41)MFV		0	1	0			REV__ENST00000370435.4_1_6:72014589-72014727:+|nuORF	REV__ENST00000370435.4_1_6:72014589-72014727:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.2931518554688	2	595.792166	1189.56978	0.13287	7.9163E-05	-0.65247	-0.00038874	-0.5196	-0.00030957	595.7914902132644	37.095	0.15459	37.095	36.951	37.106	0					11	8	2	0	0	0	0.41354	1	12156	12156		40.573	7.7602	1	62220	+		21115	18635	13540	13596	21428	21428	662				-0.017422713417090563
KMYSKAQK	8	Unmodified	_KMYSKAQK_					0	0	0			REV__ENST00000592840.1_1_16:4749591-4751599:-|nuORF	REV__ENST00000592840.1_1_16:4749591-4751599:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2727355957031	2	492.27077	982.526987	0.79312	0.00039043	2.5769	0.0012685	3.37	0.001659	492.2722086450368	12.152	0.14154	12.152	12.084	12.226	0					10	4	3	0	0	0	0.23898	1	2492	2492		94.006	18.963	1	204950	+		21116	16242	13541	13597	21429	21429					0.03502417916729428
KNAAICCEA	9	Carbamidomethyl (C)	_KNAAIC(Carbamidomethyl (C))CEA_	KNAAIC(0.5)C(0.5)EA		KNAAIC(0)C(0)EA		0	1	0			REV__nc|ENSG00000182973|Q9H9A5-5|CNOT10	REV__nc|ENSG00000182973|Q9H9A5-5|CNOT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2200012207031	2	490.22042	978.426286	-0.5399	-0.00026467	-0.61394	-0.00030097	-1.1538	-0.00056564	490.2203221017517	19.401	0.31197	19.401	19.196	19.508	0					11	6	3	0	0	0	0.1236	1	6003	6003		73.975	20.623	2	304820	+		21117	12531	13542	13598	21430	21430	494;495				-0.06378982128455846
KNADFLRR	8	Unmodified	_KNADFLRR_					0	0	0			REV__nc|ENSG00000105220|P06744-2|GPI	REV__nc|ENSG00000105220|P06744-2|GPI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.29034423828125	2	510.290882	1018.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.503	1	13.503	13.003	14.003	0								0	0	0	1.7419	1	3302	3302		18.324	0.95945	1		+	+	21118	20961	13543	13599	21431	21431					0.058671006315080376
KNAISLPV	8	Unmodified	_KNAISLPV_					0	0	0		ENSG00000149798|ENST00000279249|CDC42EP2	ENSG00000149798|ENST00000279249|CDC42EP2	ENSG00000149798|ENST00000279249|CDC42EP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.2606201171875	2	421.260728	840.506903	-0.12291	-5.1777E-05	-1.495	-0.00062979	-1.6179	-0.00068157	421.2605887284073	23.07	0.36801	23.07	22.811	23.179	0					12	7	2	0	0	0	0.65276	1	7886	7886		40.573	0	1	227540			21119	4907	13544	13600	21432	21432					0.08026990248413313
KNALKDAKN	9	Unmodified	_KNALKDAKN_					0	0	0		KRT1|p.E434K|1|0.29|ENSG00000167768|chr12:52676450-52676450|C/T|missense_variant	KRT1|p.E434K|1|0.29|ENSG00000167768|chr12:52676450-52676450|C/T|missense_variant	KRT1|p.E434K|1|0.29|ENSG00000167768|chr12:52676450-52676450|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2904052734375	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.784	1	17.784	17.284	18.284	0								0	0	0	0.045272	1	5343	5343		93.195	26.766	1				21120	11265	13545	13601	21433	21433					0.06628261191781348
KNASRPMVI	9	Unmodified	_KNASRPMVI_					0	0	0		nc|ENSG00000092853|Q9HAW4-3|CLSPN;nc|ENSG00000092853|Q9HAW4-2|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-3|CLSPN	nc|ENSG00000092853|Q9HAW4-3|CLSPN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2895202636719	2	508.289494	1014.56443	0.10264	5.2172E-05	-1.258	-0.00063945	-1.1554	-0.00058728	508.2891655416319	33.99	0.11011	33.99	33.929	34.039	0					5	3	2	0	0	0	0.33044	1	11999	11999		47.657	5.2612	1	86098			21121	11454	13546	13602	21434	21434					0.05773509182336056
KNATDQVETLW	11	Unmodified	_KNATDQVETLW_					0	0	0			REV__nc|ENSG00000151067|Q13936-15|CACNA1C	REV__nc|ENSG00000151067|Q13936-15|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	652.8280029296875	2	652.827692	1303.64083	0.23319	0.00015223	-0.47354	-0.00030914	-0.24035	-0.00015691	652.8274158589933	32	0.31278	32	31.839	32.151	0					23	12	3	0	0	0	0.69524	1	10304	10304		28.081	1.0342	1	74002	+		21122	21063	13547	13603	21435	21435					0.0011555949267858523
KNATREIGGV	10	Unmodified	_KNATREIGGV_					0	0	0			REV__ENST00000552285.5_1_12:58087830-58087884:+|nuORF	REV__ENST00000552285.5_1_12:58087830-58087884:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7991333007812	2	522.793455	1043.57236	-1.2965	-0.00067781	2.1442	0.001121	0.84766	0.00044315	522.7945569875113	17.862	0.18693	17.862	17.768	17.955	0					9	4	3	0	0	0	0.63224	1	4513	4513		30.318	2.4355	1	430150	+		21123	20211	13548	13604	21436	21436					0.05231359703475391
KNAVLEHME	9	Unmodified	_KNAVLEHME_					0	0	0		ENST00000587856.1_1_17:43311355-43318139:+|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.76904296875	2	535.768591	1069.52263	1.9034	0.0010198	-1.696	-0.00090864	0.20744	0.00011114	535.7677755755359	32.714	0.26794	32.714	32.607	32.875	0					15	5	4	0	0	0	0.24095	1	12372	12372		56.721	3.3696	1	945210			21124	7043	13549	13605	21437	21437					-0.009350912968329794
KNAVNGVPEL	10	Unmodified	_KNAVNGVPEL_					0	0	0			REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7896118164062	2	520.790381	1039.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.788	1	12.788	12.288	13.288	0								0	0	0	0.3639	1	2765	2765		40.778	3.6191	1		+		21125	14519	13550	13606	21438	21438					0.048008414719333814
KNCEFLVNR	9	Unmodified	_KNCEFLVNR_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;ENST00000471546.5_1_2:197504460-197531652:+|nuORF;CCDC150|p.E447Sfs*3|1|0.16|ENSG00000144395|chr2:196676625-196676625|A/-|frameshift_variant;ENST00000471033.5_1_2:197521363-197521654:+|nuORF	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7923583984375	2	561.789858	1121.56516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.485	1	28.485	27.985	28.985	0								0	0	0	0.31838	1	10441	10441		31.53	7.0106	1				21126	4613	13551	13607	21439	21439					0.009243038313798024
KNCIIVSPDA	10	Carbamidomethyl (C)	_KNC(Carbamidomethyl (C))IIVSPDA_	KNC(1)IIVSPDA		KNC(57)IIVSPDA		0	1	0		ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.789794921875	2	558.789524	1115.56449	-0.13255	-7.4066E-05	0.33598	0.00018774	0.20343	0.00011368	558.7898954582962	18.635	0.21754	18.635	18.527	18.745	0					6	4	2	0	0	0	0.39566	1	5765	5765		56.721	7.2795	1	208830			21127	2140	13552	13608	21440	21440	80				0.011334643916825371
KNCMIPFL	8	Unmodified	_KNCMIPFL_					0	0	0		ENST00000549884.5_1_12:57008998-57009103:-|nuORF;ENST00000379441.7_1_12:57008905-57009103:-|nuORF	ENST00000549884.5_1_12:57008998-57009103:-|nuORF	ENST00000549884.5_1_12:57008998-57009103:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.25054931640625	2	483.250991	964.48743	0.68021	0.00032871	-1.3422	-0.00064863	-0.66201	-0.00031992	483.25029743212735	44.68	0.09404	44.68	44.606	44.7	0					6	5	2	0	0	0	0.67475	1	17360	17360		37.028	3.5129	1	66214			21128	9080	13553	13609	21441	21441					0.0037657464164340126
KNDFAFLL	8	Unmodified	_KNDFAFLL_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.265625	2	484.26601	966.517468	-0.1937	-9.3803E-05	-0.67813	-0.0003284	-0.87184	-0.0004222	484.2658234585564	11.546	0.06209	11.546	11.487	11.549	0					4	2	2	0	0	0	0.78318	1	2239	2239		9.4706	0	1	122970			21129	6300	13554	13610	21442	21442					0.03286972902856178
KNDIRVEIV	9	Unmodified	_KNDIRVEIV_					0	0	0		ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.3200073242188	2	543.319306	1084.62406	1.1407	0.00061976	-0.58074	-0.00031553	0.55995	0.00030423	543.3192639147828	26.837	0.16666	26.837	26.778	26.944	0					6	3	2	0	0	0	0.1424	1	9665	9665		69.628	7.5202	1	190170			21130	4895	13555	13611	21443	21443					0.08513103397353916
KNDKIYLL	8	Unmodified	_KNDKIYLL_					0	0	0			REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1	REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.8004455566406	2	503.800217	1005.58588	1.1936	0.00060135	-4.3434	-0.0021882	-3.1498	-0.0015869	503.79980000227437	27.205	1.3297	27.205	26.332	27.662	0					46	26	4	0	0	0	0.49216	1	9719	9719		60.972	0.67798	1	690260	+		21131	22061	13556	13612	21444	21444					0.08331217482702868
KNDKKKINN	9	Unmodified	_KNDKKKINN_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.32275390625	2	551.32238	1100.63021	1.8165	0.0010015	-1.8626	-0.0010269	-0.046094	-2.5413E-05	551.3215921133277	18.71	0.11533	18.71	18.653	18.768	0					4	2	2	0	0	0	0.12239	1	5667	5667		74.255	4.6274	1	502370	+		21132	13475	13557	13613	21445	21445					0.08391621628902612
KNEERLSK	8	Unmodified	_KNEERLSK_					0	0	0			REV__nc|ENSG00000174015|Q8NA61-2|CBY2	REV__nc|ENSG00000174015|Q8NA61-2|CBY2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.27972412109375	2	502.28018	1002.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.348	1	15.348	14.848	15.848	0								0	0	0	1.7419	1	4025	4025		85.161	0	1		+		21133	16542	13558	13614	21446	21446					0.04463670812151577
KNEFSIMI	8	Unmodified	_KNEFSIMI_					0	0	0			REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2576599121094	2	491.257328	980.500103	0.54776	0.00026909	0.54807	0.00026925	1.0958	0.00053833	491.25715422810475	36.015	0.13136	36.015	35.962	36.093	0					6	4	2	0	0	0	0.65276	1	12874	12874		40.573	0	1	30364	+		21134	22101	13559	13615	21447	21447					0.00907309305534909
KNEKLCEI	8	Carbamidomethyl (C)	_KNEKLC(Carbamidomethyl (C))EI_	KNEKLC(1)EI		KNEKLC(88)EI		0	1	0			REV__ENSG00000090863|ENST00000422840|GLG1	REV__ENSG00000090863|ENST00000422840|GLG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2732543945312	2	517.270967	1032.52738	1.5112	0.0007817	2.8037	0.0014503	4.3149	0.002232	517.2724983597257	12.761	0.10425	12.761	12.71	12.815	0					4	2	2	0	0	0	0.28427	1	2962	2962		87.754	8.3033	1	745390	+		21135	13430	13560	13616	21448	21448	515				0.01241792845917189
KNEQERVL	8	Unmodified	_KNEQERVL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.280029296875	2	508.28018	1014.54581	0.90083	0.00045787	-0.73844	-0.00037534	0.16238	8.2536E-05	508.27937582477546	19.046	0.21348	19.046	18.924	19.138	0					10	5	3	0	0	0	0.5676	1	5689	5689		53.351	2.1588	1	491670			21136	6578	13561	13617	21449	21449					0.03911670812135526
KNETAEKVL	9	Unmodified	_KNETAEKVL_					0	0	0			REV__CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant	REV__CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2905883789062	2	516.290214	1030.56587	0.035434	1.8294E-05	-1.5987	-0.00082541	-1.5633	-0.00080712	516.2892508918261	36.047	0.12583	36.047	35.969	36.095	0					6	3	2	0	0	0	0.25716	1	13559	13559		54.776	1.8396	1	123840	+		21137	12429	13562	13618	21450	21450					0.051814217520814054
KNFHTSPAE	9	Unmodified	_KNFHTSPAE_					0	0	0		ENST00000534964.6_1_15:52970223-52970710:-|nuORF	ENST00000534964.6_1_15:52970223-52970710:-|nuORF	ENST00000534964.6_1_15:52970223-52970710:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7518920898438	2	515.751256	1029.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.696	1	27.696	27.196	28.196	0								0	0	0	0.1219	1	8855	8855		66.429	7.6473	1				21138	10475	13563	13619	21451	21451					-0.025605911132970505
KNFKAQIEL	9	Unmodified	_KNFKAQIEL_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.21246337890625	3	364.213358	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.945	1	25.945	25.445	26.445	0								0	0	0	0.3368	1	8098	8098		27.882	1.1893	1		+		21139	13686	13564	13620	21452	21452					0.07702004885709357
KNFKSFQF	8	Unmodified	_KNFKSFQF_					0	0	0		ENST00000602402.5_1_13:96443355-96443493:+|nuORF	ENST00000602402.5_1_13:96443355-96443493:+|nuORF	ENST00000602402.5_1_13:96443355-96443493:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2754516601562	2	523.276909	1044.53927	0.46578	0.00024373	-3.2089	-0.0016791	-2.7431	-0.0014354	523.2750572427086	20.051	0.16739	20.051	19.944	20.111	0					5	3	2	0	0	0	0.64144	1	6319	6319		42.396	3.59	1	150420			21140	11045	13565	13621	21453	21453					0.01877777651429824
KNFNQVGGK	9	Unmodified	_KNFNQVGGK_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.27093505859375	2	496.269616	990.524678	2.8697	0.0014242	-0.29139	-0.00014461	2.5783	0.0012795	496.26958757264043	15.186	0.16743	15.186	15.13	15.297	0					7	3	3	0	0	0	0.062676	1	3960	3960		90.777	2.1338	1	1840300	+		21141	14065	13566	13622	21454	21454					0.029037055032972603
KNFNRALE	8	Unmodified	_KNFNRALE_					0	0	0		TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant;TMTC3|p.K758Nfs*31|1|0.16|ENSG00000139324|chr12:88195172-88195172|A/-|frameshift_variant;ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant	TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.76318359375	2	496.269616	990.524678	2.8759	0.0014272	3.6424	0.0018076	6.5183	0.0032348	496.27275125459045	14.054	0.20599	14.054	13.931	14.137	0					8	4	3	0	0	0	0.30437	1	3432	3432		82.305	2.854	1	600930			21142	4320	13567	13623	21455	21455					0.02903705503274523
KNFVTDDY	8	Unmodified	_KNFVTDDY_					0	0	0		tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.23291015625	2	501.232364	1000.45018	1.1187	0.00056073	-0.068523	-3.4346E-05	1.0502	0.00052639	501.2323353745919	24.861	0.60796	24.861	24.756	25.364	0					28	12	3	0	0	0	0.60719	1	8641	8641		47.916	7.1374	1	2006900			21143	22856	13568	13624	21456	21456					-0.05003102098760337
KNGDAEER	8	Unmodified	_KNGDAEER_					0	0	0			REV__ENSG00000052749|ENST00000370992|RRP12	REV__ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7168273925781	2	459.717413	917.420273	-0.44843	-0.00020615	-0.57421	-0.00026397	-1.0226	-0.00047013	459.71704736741043	15.272	0.1681	15.272	15.212	15.38	0					5	3	2	0	0	0	0.5535	1	4002	4002		54.776	3.4409	1	208320	+		21144	13040	13569	13625	21457	21457					-0.04174041044097976
KNGDINKFT	9	Unmodified	_KNGDINKFT_					0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.774658203125	2	518.774731	1035.53491	0.96263	0.00049939	-0.42188	-0.00021886	0.54075	0.00028053	518.7742202915118	21.921	0.27909	21.921	21.806	22.085	0					12	6	3	0	0	0	0.41113	1	6442	6442		40.778	1.5253	1	118570	+		21145	21906	13570	13626	21458	21458					0.018562684378593985
KNGERPSHEV	10	Unmodified	_KNGERPSHEV_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.7931518554688	2	576.791444	1151.56833	3.291	0.0018982	-0.77046	-0.00044439	2.5206	0.0014538	576.7911124951846	40.326	0.27484	40.326	40.164	40.439	0					11	6	2	0	0	0	0.32758	1	16017	16017		64.207	5.4253	1	165690			21146	1107	13571	13627	21459	21459					-0.001387297902510909
KNGESLSM	8	Unmodified	_KNGESLSM_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.20867919921875	2	433.207835	864.401117	-0.46402	-0.00020102	0.05403	2.3406E-05	-0.40999	-0.00017761	433.20795896222734	31.446	0.24065	31.446	31.348	31.589	0					10	5	2	0	0	0	0.37378	1	11849	11849		73.975	6.4811	1	142210			21147	7514	13572	13628	21460	21460					-0.03650713659351368
KNGGSSRVR	9	Unmodified	_KNGGSSRVR_					0	0	0		nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000559816.1_1_15:50534459-50545113:-|nuORF	nc|ENSG00000140287|P19113-2|HDC	nc|ENSG00000140287|P19113-2|HDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.77142333984375	2	480.770314	959.526075	-0.29893	-0.00014372	2.3744	0.0011416	2.0755	0.00099784	480.7713861256223	17.825	0.13848	17.825	17.737	17.876	0					5	3	2	0	0	0	0.51991	1	4539	4539		30.318	2.0634	1	113650			21148	4376	13573	13629	21461	21461					0.04469339592048982
KNGINDIKY	9	Unmodified	_KNGINDIKY_					0	0	0		PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant	PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant	PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7900390625	2	532.790381	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.767	1	31.767	31.267	32.267	0								0	0	0	0.14033	1	10226	10226		62.107	1.1355	1				21149	11974	13574	13630	21462	21462					0.036968414719467546
KNGKDTFYRRK	11	Unmodified	_KNGKDTFYRRK_					0	0	0		ENST00000583454.1_1_17:73512940-73513526:+|nuORF	ENST00000583454.1_1_17:73512940-73513526:+|nuORF	ENST00000583454.1_1_17:73512940-73513526:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	706.8902587890625	2	706.891492	1411.76843	-2.7156	-0.0019196	-0.48312	-0.00034151	-3.1987	-0.0022611	706.8909783978778	37.1	1.0151	37.1	36.408	37.423	0					44	28	2	0	0	0	0.64626	1	13792	13792		32.751	3.5805	1	110580			21150	10884	13575	13631	21463	21463					0.07901744877312922
KNGKIIDHL	9	Unmodified	_KNGKIIDHL_					0	0	0			REV__ENSG00000094975|ENST00000263688|SUCO	REV__ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.3097534179688	2	519.308741	1036.60293	0.059514	3.0906E-05	1.1398	0.00059193	1.1994	0.00062283	519.3093937350635	20.967	0.2966	20.967	20.92	21.217	0					11	7	2	0	0	0	0.14603	1	6598	6598		68.787	8.6686	1	304700	+		21151	13464	13576	13632	21464	21464					0.08609138088513646
KNGKTSPASK	10	Unmodified	_KNGKTSPASK_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.78900146484375	2	509.288005	1016.56146	1.1708	0.00059626	1.2771	0.00065044	2.4479	0.0012467	509.78896584040547	41.957	0.10907	41.957	41.851	41.96	0					7	5	2	0	0	0	0.50639	1	16462	16462		32.751	0	1	51363			21152	4284	13577	13633	21465	21465					0.053839573291725173
KNGLWESL	8	Unmodified	_KNGLWESL_					0	0	0			REV__ENSG00000007216|ENST00000314669|SLC13A2	REV__ENSG00000007216|ENST00000314669|SLC13A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.753173828125	2	473.753267	945.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.239	1	32.239	31.739	32.739	0								0	0	0	1.7419	1	11816	11816		47.916	0.25827	1		+		21153	12869	13578	13634	21466	21466					0.01705498380431436
KNGNSRRPKA	10	Unmodified	_KNGNSRRPKA_					0	0	0		nc|ENSG00000135525|Q14244-4|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	nc|ENSG00000135525|Q14244-4|MAP7	nc|ENSG00000135525|Q14244-4|MAP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.8259887695312	2	564.323245	1126.63194	0.13488	7.6116E-05	1.4145	0.00079823	1.5494	0.00087435	564.3240335763522	12.729	0.51895	12.729	12.508	13.027	0					58	28	3	0	0	0	0.73854	1	2507	2507		5.9211	0.36328	1	456360			21154	11536	13579	13635	21467	21467					0.07368675437510319
KNGNSRRPKA	10	Unmodified	_KNGNSRRPKA_					0	0	0		nc|ENSG00000135525|Q14244-4|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	nc|ENSG00000135525|Q14244-4|MAP7	nc|ENSG00000135525|Q14244-4|MAP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.55169677734375	3	376.551256	1126.63194	0.23792	8.959E-05	-0.34767	-0.00013092	-0.10975	-4.1325E-05	376.55115522035663	12.932	0.14351	12.932	12.815	12.958	0					6	3	2	0	0	0	0.65895	1	3010	3010		27.047	5.2669	1	81104			21155	11536	13579	13635	21468	21468					0.07368675437510319
KNGQKACL	8	Unmodified	_KNGQKACL_					0	0	0		ENSG00000081041|ENST00000508487|CXCL2	ENSG00000081041|ENST00000508487|CXCL2	ENSG00000081041|ENST00000508487|CXCL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.2320861816406	2	431.234187	860.453822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.855	1	26.855	26.355	27.355	0								0	0	0	1.7419	1	8708	8708		37.028	0	1				21156	1652	13580	13636	21469	21469					0.018012891940998088
KNGSGWDAD	9	Unmodified	_KNGSGWDAD_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;TNRC6C|p.E657Rfs*3|1|0.32|ENSG00000078687|chr17:78051026-78051026|G/-|frameshift_variant;TNRC6C|p.K926Rfs*3|1|0.18|ENSG00000078687|chr17:78067919-78067919|A/-|frameshift_variant;TNRC6C|p.G923Dfs*6|2|0.46|ENSG00000078687|chr17:78067906-78067906|A/-|frameshift_variant;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.20367431640625	2	475.204138	948.393724	-0.43706	-0.00020769	-0.46249	-0.00021978	-0.89955	-0.00042747	475.2039120494153	42.11	0.22744	42.11	42.037	42.265	0					15	11	2	0	0	0	0.59223	1	15976	15976		22.58	0.61977	1	57951			21157	1605	13581	13637	21470	21470					-0.08253729935438514
KNGTFIIE	8	Unmodified	_KNGTFIIE_					0	0	0			REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2545471191406	2	461.255643	920.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.768	1	28.768	28.268	29.268	0								0	0	0	1.7419	1	9593	9593		34.173	4.331	1		+		21158	22055	13582	13638	21471	21471					0.03330382523188291
KNGTTQDRY	9	Unmodified	_KNGTTQDRY_					0	0	0		FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant;ENSG00000102302|ENST00000375135|FGD1	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7667236328125	2	541.764894	1081.51524	0.31325	0.00016971	1.7861	0.00096763	2.0993	0.0011373	541.7664573264766	31.835	0.25464	31.835	31.736	31.99	0					8	5	2	0	0	0	0.39215	1	12058	12058		42.396	1.618	1	51067			21159	2163	13583	13639	21472	21472					-0.022261075729147706
KNHPLYAL	8	Unmodified	_KNHPLYAL_					0	0	0		nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	nc|ENSG00000154767|Q01831-2|XPC	nc|ENSG00000154767|Q01831-2|XPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2711486816406	2	478.271627	954.528701	-0.28412	-0.00013589	-0.18042	-8.6288E-05	-0.46453	-0.00022217	478.2714176113788	32.767	0.68789	32.767	32.331	33.019	0					31	17	2	0	0	0	0.75243	1	12058	12058		26.796	0	1	218270			21160	5102	13584	13640	21473	21473					0.04961794996984281
KNHRKKNL	8	Unmodified	_KNHRKKNL_					0	0	0		ENST00000460752.1_1_10:95429548-95430539:-|nuORF	ENST00000460752.1_1_10:95429548-95430539:-|nuORF	ENST00000460752.1_1_10:95429548-95430539:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.55010986328125	3	346.549075	1036.6254	3.0301	0.0010501	-0.068731	-2.3819E-05	2.9614	0.0010263	346.54901656003307	20.819	0.21653	20.819	20.709	20.926	0					5	4	2	0	0	0	0.78142	1	6688	6688		23.042	1.0826	1	1667000			21161	9722	13585	13641	21474	21474					0.10854782276783226
KNIDTTIII	9	Unmodified	_KNIDTTIII_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;CFAP47|p.F1567Vfs*4|1|0.31|ENSG00000165164|chrX:36098829-36098830|-/G|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-6|CFAP47;CFAP47|p.K734Nfs*6|1|0.13|ENSG00000165164|chrX:35971909-35971909|A/-|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;CFAP47|p.G416Efs*26|1|0.04|ENSG00000165164|chrX:35956032-35956033|-/AATATATTTGCTTA|frameshift_variant	ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.G416Efs*26|1|0.04|ENSG00000165164|chrX:35956032-35956033|-/AATATATTTGCTTA|frameshift_variant	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	344.2093200683594	3	344.209613	1029.60701	-1.9565	-0.00067344	1.2194	0.00041973	-0.73709	-0.00025371	344.21010635682853	24.946	0.19804	24.946	24.844	25.042	0					10	4	3	0	0	0	0.17854	1	7848	7848		64.207	0.67341	1	609170			21162	5768;494	13586	13642	21475	21475					0.09339182791586609
KNIKDLRAQ	9	Unmodified	_KNIKDLRAQ_					0	0	0		ENST00000555540.1_1_14:35981656-35982271:-|nuORF	ENST00000555540.1_1_14:35981656-35982271:-|nuORF	ENST00000555540.1_1_14:35981656-35982271:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.3253784179688	2	543.324922	1084.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.71	1	17.71	17.21	18.21	0								0	0	0	0.241	1	4277	4277		37.812	0	1				21163	10660	13587	13643	21476	21476					0.09635925491488706
KNIKELYSL	9	Unmodified	_KNIKELYSL_					0	0	0		tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.88519287109375	3	369.88513	1106.63356	-1.0196	-0.00037713	0.53208	0.00019681	-0.48751	-0.00018032	369.88536071205806	23.068	0.86182	23.068	22.971	23.833	0					75	29	6	0	0	0	0.33044	1	7008	7008		47.657	1.6851	1	23977000			21164	22575	13588	13644	21477	21477					0.08450871682885008
KNILVIGAGK	10	Unmodified	_KNILVIGAGK_					0	0	0		tr|U7SH88|U7SH88_FUSNUprecorrin-2dehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02366PE=4SV=1	tr|U7SH88|U7SH88_FUSNUprecorrin-2dehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02366PE=4SV=1	tr|U7SH88|U7SH88_FUSNUprecorrin-2dehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02366PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.2220458984375	3	338.221965	1011.64407	0.66473	0.00022483	-0.57269	-0.00019369	0.092045	3.1132E-05	338.22178725126196	15.076	0.23344	15.076	14.941	15.174	0					13	5	3	0	0	0	0.4758	1	3831	3831		47.96	2.0514	1	444640			21165	22592	13589	13645	21478	21478					0.1387089912798274
KNIPIVTG	8	Unmodified	_KNIPIVTG_					0	0	0			REV__ENST00000585812.5_1_17:59431721-59456358:+|nuORF	REV__ENST00000585812.5_1_17:59431721-59456358:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2605895996094	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.866	1	22.866	22.366	23.366	0								0	0	0	1.7419	1	6531	6531		76.847	4.9692	1		+		21166	20474	13590	13646	21479	21479					0.0802699024843605
KNISGLII	8	Unmodified	_KNISGLII_					0	0	0		ZNF248|p.R196Kfs*5|1|0.13|ENSG00000198105|chr10:37832768-37832769|-/T|frameshift_variant;ENSG00000198105|ENST00000395867|ZNF248	ZNF248|p.R196Kfs*5|1|0.13|ENSG00000198105|chr10:37832768-37832769|-/T|frameshift_variant	ZNF248|p.R196Kfs*5|1|0.13|ENSG00000198105|chr10:37832768-37832769|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2762145996094	2	429.276378	856.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.692	1	25.692	25.192	26.192	0								0	0	0	1.7419	1	8206	8206		44.117	3.3386	1				21167	7531	13591	13647	21480	21480					0.1041956328251672
KNIYRLMGS	9	Unmodified	_KNIYRLMGS_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.7977905273438	2	541.294776	1080.575	1.7167	0.00092923	1.3773	0.00074554	3.094	0.0016748	541.7975472330429	16.275	0.11295	16.275	16.216	16.329	0					7	5	2	0	0	0	0.5879	1	3691	3691		23.042	0	1	36930	+		21168	14334	13592	13648	21481	21481					0.03793491836790963
KNKDKVSLK	9	Unmodified	_KNKDKVSLK_					0	0	0		tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.8886413574219	3	353.888874	1058.64479	-0.052217	-1.8479E-05	-0.40148	-0.00014208	-0.4537	-0.00016056	353.88859700026757	17.302	0.16036	17.302	17.192	17.353	0					5	3	2	0	0	0	0.51991	1	4977	4977		30.318	2.2362	1	358070			21169	22859	13593	13649	21482	21482					0.11781693777038527
KNKGSEKRQ	9	Unmodified	_KNKGSEKRQ_					0	0	0			REV__ENST00000486848.1_1_7:65579949-65599362:+|nuORF	REV__ENST00000486848.1_1_7:65579949-65599362:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.87335205078125	3	358.871995	1073.59415	3.09	0.0011089	0.54155	0.00019435	3.6316	0.0013033	358.8722093722279	19.12	0.2624	19.12	19.014	19.276	0					15	5	4	0	0	0	0.25716	1	5843	5843		54.776	14.718	1	1791300	+		21170	17686	13594	13650	21483	21483					0.06030164452022291
KNKKDFIQK	9	Unmodified	_KNKKDFIQK_					0	0	0		nc|ENSG00000153237|Q8NFR7-2|CCDC148;nc|ENSG00000153237|Q8NFR7-4|CCDC148;ENST00000451554.1_1_2:159145303-159312956:-|nuORF;CCDC148|p.K420Nfs*15|2|0.39|ENSG00000153237|chr2:158220705-158220705|T/-|frameshift_variant;ENSG00000153237|ENST00000283233|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.8433837890625	2	574.842948	1147.67134	-0.20468	-0.00011766	0.78734	0.0004526	0.58266	0.00033494	574.8434296985729	18.181	0.16942	18.181	18.072	18.241	0					5	3	2	0	0	0	0.032383	1	5549	5549		79.713	12.219	1	532030			21171	11587	13595	13651	21484	21484					0.1034138266836635
KNKKKEPID	9	Unmodified	_KNKKKEPID_					0	0	0			REV__FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant	REV__FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.32666015625	2	550.327131	1098.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.613	1	21.613	21.113	22.113	0								0	0	0	0.36609	1	6232	6232		20.947	1.8434	1		+		21172	15294	13596	13652	21485	21485					0.09433389914420331
KNKKKKEYLNE	11	Unmodified	_KNKKKKEYLNE_					0	0	0		ENSG00000131732|ENST00000407610|ZCCHC9	ENSG00000131732|ENST00000407610|ZCCHC9	ENSG00000131732|ENST00000407610|ZCCHC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	711.4056396484375	2	711.409183	1420.80381	-1.6551	-0.0011775	-0.46478	-0.00033065	-2.1199	-0.0015081	711.4077238174973	35.926	0.4286	35.926	35.624	36.052	0					15	12	2	0	0	0	0.67178	1	13884	13884		30.318	0	1	65678			21173	3736	13597	13653	21486	21486					0.11024362614534766
KNKKTLEF	8	Unmodified	_KNKKTLEF_					0	0	0		APTX|p.H292Tfs*25|1|0.18|ENSG00000137074|chr9:32974500-32974501|-/T|frameshift_variant	APTX|p.H292Tfs*25|1|0.18|ENSG00000137074|chr9:32974500-32974501|-/T|frameshift_variant	APTX|p.H292Tfs*25|1|0.18|ENSG00000137074|chr9:32974500-32974501|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.29779052734375	2	504.297842	1006.58113	0.77045	0.00038854	-0.27745	-0.00013992	0.49301	0.00024862	504.29767206599877	29.25	2.1723	29.25	28.165	30.337	0					92	54	2	0	0	0	0.63077	1	10106	10106		44.117	3.3386	1	203210			21174	190	13598	13654	21487	21487					0.07810333339955378
KNKLPNRYI	9	Unmodified	_KNKLPNRYI_					0	0	0			REV__OR5T3|p.K120Sfs*36|1|0.04|ENSG00000172489|chr11:56252557-56252558|-/GT|frameshift_variant	REV__OR5T3|p.K120Sfs*36|1|0.04|ENSG00000172489|chr11:56252557-56252558|-/GT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.3446655273438	2	573.343115	1144.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.36	1	17.36	16.86	17.86	0								0	0	0	0.34845	1	4338	4338		7.1934	0	1		+		21175	16469	13599	13655	21488	21488					0.10512802388234377
KNKPQVPV	8	Unmodified	_KNKPQVPV_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.27880859375	2	455.279452	908.544351	-1.1229	-0.00051126	0.2871	0.00013071	-0.83585	-0.00038055	455.27962506203266	32.769	0.27344	32.769	32.61	32.883	0					18	10	2	0	0	0	0.7126	1	10918	10918		31.955	4.0726	1	149250			21176	8006	13600	13656	21489	21489					0.08642081514040001
KNKPSKSNK	9	Unmodified	_KNKPSKSNK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.8037109375	2	515.803823	1029.59309	1.4388	0.00074215	-1.5065	-0.00077703	-0.067625	-3.4881E-05	515.8028009078716	18.367	0.37101	18.367	18.19	18.561	0					16	5	4	0	0	0	0.16806	1	5630	5630		65.465	4.4934	1	1353900			21177	5668	13601	13657	21490	21490					0.07947950083121214
KNKSAPKV	8	Unmodified	_KNKSAPKV_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.2659606933594	2	436.271627	870.528701	-0.42071	-0.00018354	-0.80668	-0.00035193	-1.2274	-0.00053548	436.2710271087921	31.58	0.44303	31.58	31.485	31.928	0					17	9	3	0	0	0	0.67394	1	12047	12047		37.159	0	1	776410			21178	5527	13602	13658	21491	21491					0.08825794996994318
KNKSIKGIP	9	Unmodified	_KNKSIKGIP_					0	0	0			REV__SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant	REV__SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	328.8779602050781	3	328.878198	983.612765	0.28504	9.3744E-05	-0.74799	-0.000246	-0.46294	-0.00015225	328.87801188721255	13.713	0.2158	13.713	13.587	13.803	0					21	11	3	0	0	0	0.61124	1	2701	2701		8.6937	0	1	138490	+		21179	14790	13603	13659	21492	21492					0.12030326093906751
KNKSLSIFR	9	Unmodified	_KNKSLSIFR_					0	0	0			REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.831298828125	2	546.82984	1091.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.686	1	19.686	19.186	20.186	0								0	0	0	0.28666	1	5140	5140		16.473	0	1		+		21180	22122	13604	13660	21493	21493					0.10297113496903876
KNKVNPTEAV	10	Unmodified	_KNKVNPTEAV_					0	0	0			REV__nc|ENSG00000143379|Q15047-2|SETDB1	REV__nc|ENSG00000143379|Q15047-2|SETDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3086547851562	2	550.308938	1098.60332	1.8154	0.00099902	-1.6718	-0.00091999	0.1436	7.9023E-05	550.3079078718268	31.861	0.26553	31.861	31.751	32.017	0					9	5	3	0	0	0	0.15477	1	11970	11970		85.862	22.328	1	462180	+		21181	15188	13605	13661	21494	21494					0.05796513017685356
KNLCHPCLS	9	Unmodified	_KNLCHPCLS_					0	0	0		ENST00000441493.6_1_22:18271402-18271729:-|nuORF	ENST00000441493.6_1_22:18271402-18271729:-|nuORF	ENST00000441493.6_1_22:18271402-18271729:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7447204589844	2	507.746605	1013.47866	-0.14195	-7.2075E-05	-4.3856	-0.0022268	-4.5276	-0.0022989	507.7447294531847	35.793	0.16111	35.793	35.737	35.898	0					8	3	3	0	0	0	0.45358	1	13865	13865		37.159	1.9584	1	93684			21182	9579	13606	13662	21495	21495					-0.027543989948298986
KNLDKLEIK	9	Unmodified	_KNLDKLEIK_					0	0	0			REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.837646484375	2	550.837331	1099.66011	3.7275	0.0020532	-3.4552	-0.0019033	0.27224	0.00014996	550.8356354746671	37.778	0.30078	37.778	37.674	37.974	0					13	6	3	0	0	0	0.15163	1	14812	14812		67.494	5.3863	1	340790	+		21183	22114	13607	13663	21496	21496					0.11426560574227551
KNLFSVDMI	9	Unmodified	_KNLFSVDMI_					0	0	0		tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7857055664062	2	533.78371	1065.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.297	1	20.297	19.797	20.797	0								0	0	0	0.21054	1	6556	6556		49.442	3.4693	1				21184	22794	13608	13664	21497	21497					0.022712673683372486
KNLGKEAKP	9	Unmodified	_KNLGKEAKP_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1;BCAS1|p.E250Kfs*31|1|0.06|ENSG00000064787|chr20:53996027-53996027|T/-|frameshift_variant;BCAS1|p.G267Afs*16|1|0.05|ENSG00000064787|chr20:53995974-53995975|-/TATTG|frameshift_variant;BCAS1|p.K304Rfs*49|1|0.32|ENSG00000064787|chr20:53995028-53995028|T/-|frameshift_variant	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.796142578125	2	492.795466	983.57638	-0.15418	-7.5978E-05	0.5242	0.00025832	0.37002	0.00018234	492.79564890623925	19.611	0.15712	19.611	19.525	19.682	0					10	4	3	0	0	0	0.28897	1	5099	5099		51.193	5.2407	1	162860			21185	1356	13609	13665	21498	21498					0.08393449197171776
KNLISGNI	8	Unmodified	_KNLISGNI_					0	0	0		tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.755615234375	2	429.75581	857.497067	-0.89147	-0.00038312	0.31736	0.00013639	-0.57411	-0.00024673	429.7559477828227	33.874	0.33622	33.874	33.673	34.009	0					26	13	3	0	0	0	0.41701	1	11375	11375		68.787	5.4806	1	170530			21186	22776	13610	13666	21499	21499					0.06261802243045622
KNLKSVEI	8	Unmodified	_KNLKSVEI_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7843017578125	2	465.784567	929.554582	-0.67563	-0.0003147	-0.63979	-0.00029801	-1.3154	-0.0006127	465.78480986920573	41.488	0.29293	41.488	41.284	41.577	0					20	14	2	0	0	0	0.75323	1	15742	15742		26.693	0	1	169200			21187	6366	13611	13667	21500	21500					0.08698644448600135
KNLKVNIDKK	10	Unmodified	_KNLKVNIDKK_					0	0	0		tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.3772583007812	2	600.377155	1198.73976	0.55625	0.00033396	-0.4845	-0.00029088	0.071747	4.3075E-05	600.376897997239	12.898	0.25253	12.898	12.686	12.939	0					16	7	3	0	0	0	0.52275	1	2785	2785		42.864	1.4377	1	172720			21188	22676	13612	13668	21501	21501					0.1483362724818562
KNLNKQLEK	9	Unmodified	_KNLNKQLEK_					0	0	0		ARHGAP29|p.K371Sfs*12|1|0.32|ENSG00000137962|chr1:94202575-94202575|T/-|frameshift_variant;nc|ENSG00000137962|Q52LW3-2|ARHGAP29;ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29	ARHGAP29|p.K371Sfs*12|1|0.32|ENSG00000137962|chr1:94202575-94202575|T/-|frameshift_variant	ARHGAP29|p.K371Sfs*12|1|0.32|ENSG00000137962|chr1:94202575-94202575|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.3342895507812	2	557.83258	1113.65061	1.1227	0.00062629	-0.24553	-0.00013696	0.8772	0.00048933	558.334147298726	21.253	0.11159	21.253	21.2	21.311	0					6	2	3	0	0	0	0.095583	1	6143	6143		84.916	5.4645	1	96516			21189	206	13613	13669	21502	21502					0.09832792288693781
KNLRLRKD	8	Unmodified	_KNLRLRKD_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729;ENSG00000213973|ENST00000596209|ZNF99	ENSG00000196350|ENST00000601693|ZNF729;ENSG00000213973|ENST00000596209|ZNF99	ENSG00000213973|ENST00000596209|ZNF99	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.8263549804688	2	521.827632	1041.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.615	1	27.615	27.115	28.115	0								0	0	0	1.7419	1	8819	8819		40.573	0	1				21190	7802;7352	13614	13670	21503	21503					0.12155649073974928
KNLRQMGRQL	10	Unmodified	_KNLRQMGRQL_					0	0	0		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	622.3543701171875	2	622.356231	1242.69791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.387	1	30.387	29.887	30.887	0								0	0	0	0.4146	1	10341	10341		20.947	0	1				21191	4349	13615	13671	21504	21504					0.08626748288065755
KNLSRSKRKT	10	Unmodified	_KNLSRSKRKT_					0	0	0			REV__RP1|p.L1493Vfs*4|1|0.09|ENSG00000104237|chr8:54628358-54628359|-/GTCCGTGG|frameshift_variant	REV__RP1|p.L1493Vfs*4|1|0.09|ENSG00000104237|chr8:54628358-54628359|-/GTCCGTGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.3768310546875	2	609.375478	1216.7364	2.9208	0.0017799	-0.44268	-0.00026976	2.4781	0.0015101	609.375189936622	19.816	0.37055	19.816	19.706	20.077	0					14	7	4	0	0	0	0.44292	1	6202	6202		56.721	56.721	1	3255300	+		21192	13716	13616	13672	21505	21505					0.13670377194216599
KNLVKVAL	8	Unmodified	_KNLVKVAL_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7999267578125	2	442.80002	883.585488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.758	1	33.758	33.258	34.258	0								0	0	0	1.7419	1	12514	12514		60.294	0	1				21193	7076	13617	13673	21506	21506					0.13903842553509094
KNMEKAKA	8	Oxidation (M)	_KNM(Oxidation (M))EKAKA_		KNM(1)EKAKA		KNM(69)EKAKA	0	0	1		ENST00000426801.1_1_2:210045165-210045405:+|nuORF	ENST00000426801.1_1_2:210045165-210045405:+|nuORF	ENST00000426801.1_1_2:210045165-210045405:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2528381347656	2	468.252577	934.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.138	1	14.138	13.638	14.638	0								0	0	0	1.7419	1	3449	3449		68.787	8.856	1				21194	9451	13618	13674	21507	21507		380			0.020735410200245497
KNMFVAKV	8	Unmodified	_KNMFVAKV_					0	0	0			REV__ENSG00000138604|ENST00000261858|GLCE	REV__ENSG00000138604|ENST00000261858|GLCE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7713623046875	2	468.770406	935.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.963	1	12.963	12.463	13.463	0								0	0	0	1.7419	1	3045	3045		26.796	0	1		+		21195	14985	13619	13675	21508	21508					0.055916232676850086
KNMRTTPK	8	Oxidation (M)	_KNM(Oxidation (M))RTTPK_		KNM(1)RTTPK		KNM(120)RTTPK	0	0	1		ENSG00000164743|ENST00000297324|C8orf48	ENSG00000164743|ENST00000297324|C8orf48	ENSG00000164743|ENST00000297324|C8orf48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2710876464844	2	496.271301	990.528049	0.74383	0.00036914	-1.6334	-0.00081063	-0.88962	-0.00044149	496.2706947105316	15.234	0.20508	15.234	15.18	15.385	0					7	4	3	0	0	0	0.23635	1	4133	4133		118.74	9.2647	1	1824900			21196	5724	13620	13676	21509	21509		233			0.03240632285644551
KNNIEIKKK	9	Unmodified	_KNNIEIKKK_					0	0	0			REV__tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	REV__tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8510131835938	2	557.850773	1113.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.785	1	20.785	20.285	21.285	0								0	0	0	0.2882	1	6789	6789		30.318	0	1		+		21197	21831	13621	13677	21510	21510					0.1346966918540602
KNNKKHVAR	9	Unmodified	_KNNKKHVAR_					0	0	0			REV__ENSG00000166268|ENST00000552032|MYRFL	REV__ENSG00000166268|ENST00000552032|MYRFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	365.55743408203125	3	365.55623	1093.64686	-0.10514	-3.8436E-05	2.6642	0.00097392	2.5591	0.00093548	365.55730548222596	22.065	0.13897	22.065	21.988	22.127	0					6	3	2	0	0	0	0.57706	1	6525	6525		24.519	0	1	46070	+		21198	16103	13622	13678	21511	21511					0.1037816730549821
KNNPCYSRRDC	11	Unmodified	_KNNPCYSRRDC_					0	0	0		tr|U7SH97|U7SH97_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02207PE=4SV=1	tr|U7SH97|U7SH97_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02207PE=4SV=1	tr|U7SH97|U7SH97_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02207PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	678.3025512695312	2	678.300795	1354.58704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.957	1	17.957	17.457	18.457	0								0	0	0	0.45674	1	4588	4588		12.812	2.5465	1				21199	22593	13623	13679	21512	21512					-0.07607259482347217
KNNVLTVTR	9	Unmodified	_KNNVLTVTR_					0	0	0			REV__ENST00000393085.3_1_7:135613116-135613200:-|nuORF	REV__ENST00000393085.3_1_7:135613116-135613200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8138427734375	2	522.811648	1043.60874	3.4077	0.0017816	0.89449	0.00046765	4.3022	0.0022492	522.8119617597297	44.835	0.48677	44.835	44.55	45.036	0					34	20	3	0	0	0	0.48623	1	17914	17914		33.922	1.1092	1	139370	+		21200	18842	13624	13680	21513	21513					0.08868236600164892
KNNYDVKN	8	Unmodified	_KNNYDVKN_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.75140380859375	2	497.751256	993.487959	-2.2701	-0.0011299	3.0219	0.0015041	0.75179	0.0003742	497.75267539052805	28.569	0.32657	28.569	28.467	28.793	0					14	8	2	0	0	0	0.63077	1	9498	9498		44.117	1.7207	1	299480			21201	1679	13625	13681	21514	21514					-0.00904591113294373
KNPQVQER	8	Unmodified	_KNPQVQER_					0	0	0			REV__UBE2E2|p.K39N|1|0.32|ENSG00000182247|chr3:23208816-23208816|G/T|missense_variant	REV__UBE2E2|p.K39N|1|0.32|ENSG00000182247|chr3:23208816-23208816|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7726135253906	2	499.772522	997.530492	0.66775	0.00033372	-1.4811	-0.00074021	-0.81334	-0.00040648	499.77235102552123	13.669	0.20687	13.669	13.624	13.831	0					6	5	2	0	0	0	0.63077	1	3174	3174		44.117	0	1	295320	+		21202	22253	13626	13682	21515	21515					0.03162804014948506
KNPSVTIKF	9	Unmodified	_KNPSVTIKF_					0	0	0			REV__ENSG00000055208|ENST00000637181|TAB2	REV__ENSG00000055208|ENST00000637181|TAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.3062133789062	2	517.305667	1032.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.669	1	46.669	46.169	47.169	0								0	0	0	0.27521	1	18667	18667		40.778	5.1599	1		+		21203	13053	13627	13683	21516	21516					0.08178619856994374
KNQEDLLIA	9	Unmodified	_KNQEDLLIA_					0	0	0			REV__ENSG00000100319|ENST00000344318|ZMAT5	REV__ENSG00000100319|ENST00000344318|ZMAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2909545898438	2	522.290214	1042.56587	1.0714	0.00055958	-0.25676	-0.0001341	0.81464	0.00042548	522.290435861622	26.545	0.14062	26.545	26.467	26.608	0					6	3	2	0	0	0	0.3269	1	8580	8580		47.96	1.9873	1	117120	+		21204	13539	13628	13684	21517	21517					0.046294217521108294
KNQHTKIHK	9	Unmodified	_KNQHTKIHK_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.3305053710938	2	567.330539	1132.64652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.343	1	51.343	50.843	51.843	0								0	0	0	0.3428	1	15875	15875		26.693	4.1133	1		+		21205	17036	13629	13685	21518	21518					0.08550747585650242
KNQIGNSELP	10	Unmodified	_KNQIGNSELP_					0	0	0		nc|ENSG00000122432|Q5VX52|SPATA1;nc|ENSG00000122432|Q5VX52-2|SPATA1;nc|ENSG00000122432|Q5VX52-4|SPATA1;ENSG00000122432|ENST00000699524|SPATA1	nc|ENSG00000122432|Q5VX52|SPATA1	nc|ENSG00000122432|Q5VX52|SPATA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2940063476562	2	550.290745	1098.56694	3.749	0.002063	0.68665	0.00037786	4.4356	0.0024409	550.2911432026108	40.574	0.59635	40.574	40.376	40.972	0					21	11	2	0	0	0	0.43008	1	16088	16088		52.937	3.4952	1	884570			21206	11504	13630	13686	21519	21519					0.02159636120995856
KNQPPPVPL	9	Unmodified	_KNQPPPVPL_					0	0	0			REV__DZIP1|p.P700L|1|0.07|ENSG00000134874|chr13:95587658-95587658|G/A|missense_variant	REV__DZIP1|p.P700L|1|0.07|ENSG00000134874|chr13:95587658-95587658|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2925109863281	2	495.292559	988.570566	0.74224	0.00036763	-1.2742	-0.0006311	-0.53195	-0.00026347	495.2919011970434	30.571	0.22739	30.571	30.487	30.714	0					11	5	3	0	0	0	0.45358	1	11048	11048		37.159	1.5408	1	144390	+		21207	12758	13631	13687	21520	21520					0.07582350685515848
KNQRELQQR	9	Unmodified	_KNQRELQQR_					0	0	0			REV__SYNDIG1-MYH9|1|fusion;REV__nc|ENSG00000133026|P35580|MYH10;REV__nc|ENSG00000100345|P35579-2|MYH9;REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133026|P35580|MYH10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.336181640625	2	600.33381	1198.65307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.587	1	15.587	15.087	16.087	0								0	0	0	0.091069	1	4057	4057		74.255	8.7897	1		+		21208	14690;13544;14706;21616	13632	13688	21521	21521					0.061686407463639625
KNQSTLRLID	10	Unmodified	_KNQSTLRLID_					0	0	0			REV__ZNF280B|p.S266R|1|0.14|ENSG00000275004|chr22:22488601-22488601|A/C|missense_variant	REV__ZNF280B|p.S266R|1|0.14|ENSG00000275004|chr22:22488601-22488601|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.3411865234375	2	594.340769	1186.66699	0.26113	0.0001552	0.39679	0.00023583	0.65792	0.00039103	594.3409433718808	17.577	0.092037	17.577	17.527	17.619	0					4	2	2	0	0	0	0.36647	1	4993	4993		56.721	0	1	349580	+		21209	22317	13633	13689	21522	21522					0.08111873454822671
KNRLQTAPVPM	11	Unmodified	_KNRLQTAPVPM_					0	0	0		MAPT|p.S633N|1|0.18|ENSG00000186868|chr17:46014274-46014274|G/A|missense_variant	MAPT|p.S633N|1|0.18|ENSG00000186868|chr17:46014274-46014274|G/A|missense_variant	MAPT|p.S633N|1|0.18|ENSG00000186868|chr17:46014274-46014274|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	627.8556518554688	2	627.85299	1253.69143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.688	1	41.688	41.188	42.188	0								0	0	0	0.29313	1	15834	15834		53.089	22.52	1				21210	11348	13634	13690	21523	21523					0.07472810336662405
KNRSQIDAL	9	Unmodified	_KNRSQIDAL_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.795654296875	2	522.793455	1043.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.478	1	40.478	39.978	40.978	0								0	0	0	0.3368	1	13546	13546		27.882	9.5578	1		+		21211	13474	13635	13691	21524	21524					0.05231359703475391
KNSGPKAAKK	10	Unmodified	_KNSGPKAAKK_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;ENST00000399449.3_1_10:75487125-75488312:-|nuORF;BMS1|p.L617Afs*20|1|0.26|ENSG00000165733|chr10:42797085-42797086|-/A|frameshift_variant	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.81494140625	2	514.81419	1027.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.048	1	13.048	12.548	13.548	0								0	0	0	0.4201	1	2538	2538		23.523	0.48021	1				21212	5827	13636	13692	21525	21525					0.1011254046279646
KNSHQKQLK	9	Unmodified	_KNSHQKQLK_					0	0	0			REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.3248901367188	2	555.822547	1109.63054	0.11437	6.3569E-05	0.66472	0.00036946	0.77909	0.00043303	555.8228149550413	19.699	0.11224	19.699	19.65	19.763	0					7	4	2	0	0	0	0.095583	1	5382	5382		54.776	0	1	46588	+		21213	19822	13637	13693	21526	21526					0.08011041348754588
KNSKIIHR	8	Unmodified	_KNSKIIHR_					0	0	0		ENST00000397620.6_1_15:37391393-37391546:-|nuORF	ENST00000397620.6_1_15:37391393-37391546:-|nuORF	ENST00000397620.6_1_15:37391393-37391546:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.30926513671875	2	498.309075	994.603597	-1.1064	-0.00055134	1.8982	0.00094591	0.79182	0.00039457	498.31018897035733	13.573	0.0746	13.573	13.534	13.609	0					8	4	2	0	0	0	0.78978	1	2814	2814		12.959	1.4482	1	91971			21214	9221	13638	13694	21527	21527					0.10607977528241008
KNSKMTQII	9	Unmodified	_KNSKMTQII_					0	0	0		ENST00000481981.1_1_1:229422256-229424499:+|nuORF	ENST00000481981.1_1_1:229422256-229424499:+|nuORF	ENST00000481981.1_1_1:229422256-229424499:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.3016357421875	2	531.802434	1061.59032	-0.23241	-0.0001236	-2.7323	-0.0014531	-2.9648	-0.0015767	532.3022579440427	40.214	0.18704	40.214	40.161	40.348	0					14	10	2	0	0	0	0.38666	1	13466	13466		42.864	2.0861	1	84931			21215	9965	13639	13695	21528	21528					0.061983586339920294
KNSKSPKNK	9	Unmodified	_KNSKSPKNK_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.8043212890625	2	515.803823	1029.59309	1.3177	0.00067966	-0.33346	-0.000172	0.98421	0.00050766	515.8035049211253	18.073	0.10611	18.073	18.037	18.143	0					7	3	3	0	0	0	0.048471	1	4450	4450		95.815	28.321	1	195190	+		21216	15972	13640	13696	21529	21529					0.07947950083121214
KNSKSPKNK	9	Unmodified	_KNSKSPKNK_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8038940429688	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.188	1	18.188	17.688	18.688	0								0	0	0	0.063706	1	4698	4698		82.241	18.934	1		+		21217	15972	13640	13696	21530	21530					0.07947950083121214
KNSKVSSGK	9	Unmodified	_KNSKVSSGK_					0	0	0			REV__MLF1|p.K268Nfs*3|1|0.3|ENSG00000178053|chr3:158605194-158605194|A/-|frameshift_variant	REV__MLF1|p.K268Nfs*3|1|0.3|ENSG00000178053|chr3:158605194-158605194|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.76922607421875	2	467.769448	933.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.316	1	16.316	15.816	16.816	0								0	0	0	0.11736	1	4395	4395		67.494	11.06	1		+		21218	16721	13641	13697	21531	21531					0.05492285783441275
KNSLGLAP	8	Unmodified	_KNSLGLAP_					0	0	0			REV__nc|ENSG00000134759|Q6IA86-4|ELP2	REV__nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.2374267578125	2	400.237253	798.459953	-1.3216	-0.00052894	1.2313	0.00049282	-0.090242	-3.6118E-05	400.2377213296538	20.04	0.25605	20.04	19.872	20.128	0					14	8	2	0	0	0	0.65276	1	5525	5525		40.573	8.6178	1	85533	+		21219	14760	13642	13698	21532	21532					0.0526613069727091
KNSLKVAAIS	10	Unmodified	_KNSLKVAAIS_					0	0	0		ENSG00000122420|ENST00000370757|PTGFR	ENSG00000122420|ENST00000370757|PTGFR	ENSG00000122420|ENST00000370757|PTGFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.8167724609375	2	515.816399	1029.61824	0.22778	0.00011749	0.1966	0.00010141	0.42438	0.0002189	515.8165638235434	27.75	0.14557	27.75	27.67	27.816	0					7	4	2	0	0	0	0.46128	1	8595	8595		49.536	5.1589	1	94052			21220	3264	13643	13699	21533	21533					0.10462004885698661
KNSMCRAR	8	Unmodified	_KNSMCRAR_					0	0	0		TRIM45|p.K472Rfs*24|1|0.12|ENSG00000134253|chr1:117115629-117115629|G/-|frameshift_variant	TRIM45|p.K472Rfs*24|1|0.12|ENSG00000134253|chr1:117115629-117115629|G/-|frameshift_variant	TRIM45|p.K472Rfs*24|1|0.12|ENSG00000134253|chr1:117115629-117115629|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.243408203125	2	483.242021	964.469488	2.4145	0.0011668	0.39746	0.00019207	2.812	0.0013589	483.2421818342482	15.823	0.21632	15.823	15.763	15.98	0					7	4	2	0	0	0	0.46905	1	4269	4269		63.306	3.0123	1	811330			21221	23062	13644	13700	21534	21534					-0.014167475604949686
KNSQSVVFL	9	Unmodified	_KNSQSVVFL_					0	0	0		ENST00000490096.5_1_10:126100696-126102934:-|nuORF	ENST00000490096.5_1_10:126100696-126102934:-|nuORF	ENST00000490096.5_1_10:126100696-126102934:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2870178222656	2	511.287474	1020.5604	0.35701	0.00018253	-0.99791	-0.00051022	-0.6409	-0.00032769	511.2869572854987	26.871	0.24996	26.871	26.776	27.026	0					10	6	2	0	0	0	0.50858	1	8725	8725		31.53	2.3598	1	105690			21222	10061	13645	13701	21535	21535					0.050937429602981865
KNSRASLRKC	10	Unmodified	_KNSRASLRKC_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.8259887695312	2	581.827306	1161.64006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.768	1	40.768	40.268	41.268	0								0	0	0	0.41137	1	14461	14461		27.047	1.4733	1				21223	7007	13646	13702	21536	21536					0.06570486362625161
KNSSKAAQ	8	Unmodified	_KNSSKAAQ_					0	0	0		ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3	ENSG00000144218|ENST00000672756|AFF3	ENSG00000144218|ENST00000672756|AFF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.2275390625	2	417.227417	832.44028	0.51139	0.00021337	-0.2369	-9.8841E-05	0.27449	0.00011452	417.22730395469466	15.782	0.061181	15.782	15.759	15.82	0					4	2	2	0	0	0	0.64144	1	3502	3502		42.396	5.237	1	51366			21224	4604	13647	13703	21537	21537					0.017357546865241602
KNSSLLAKF	9	Unmodified	_KNSSLLAKF_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342712402344	3	336.53432	1006.58113	-0.34486	-0.00011606	0.066206	2.2281E-05	-0.27866	-9.3778E-05	336.5343146361847	49.23	0.48598	49.23	49.062	49.548	0					41	28	2	0	0	0	0.5879	1	14886	14886		17.468	0	1	68933			21225	22852	13648	13704	21538	21538					0.07810333339944009
KNSSLLAKF	9	Unmodified	_KNSSLLAKF_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53448486328125	3	336.53432	1006.58113	-0.6741	-0.00022686	0.41209	0.00013868	-0.26201	-8.8175E-05	336.534466120691	24.021	1.191	24.021	23.593	24.784	0					73	40	2	0	0	0	0.5879	1	7377	7377		17.468	0	1	154080			21226	22852	13648	13704	21539	21539					0.07810333339944009
KNSSLLAKF	9	Unmodified	_KNSSLLAKF_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341491699219	3	336.53432	1006.58113	1.4876	0.00050062	-1.3915	-0.00046828	0.096077	3.2333E-05	336.5337967162917	25.098	6.4193	25.098	24.447	30.866	0					183	131	2	0	0	0	0.59802	1	11310	11310		16.717	3.2633	1	646530			21227	22852	13648	13704	21540	21540					0.07810333339944009
KNSSLLAKF	9	Unmodified	_KNSSLLAKF_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.252	1	52.252	51.752	52.752	0								0	0	0	0.36266	1	19290	19290		16.717	0	1				21228	22852	13648	13704	21541	21541					0.07810333339944009
KNSTLDLINL	10	Unmodified	_KNSTLDLINL_					0	0	0		nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-8|CERKL;nc|ENSG00000188452|Q49MI3-7|CERKL	nc|ENSG00000188452|Q49MI3-5|CERKL	nc|ENSG00000188452|Q49MI3-5|CERKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.3038330078125	2	565.824421	1129.63429	1.9134	0.0010826	0.012565	7.1095E-06	1.926	0.0010898	565.8243082896391	18.474	0.52208	18.474	18.139	18.661	0					16	10	2	0	0	0	0.38179	1	5681	5681		30.318	1.1477	1	129070			21229	7252	13649	13705	21542	21542					0.07465666331927423
KNSVGSESKHG	11	Unmodified	_KNSVGSESKHG_					0	0	0		nc|ENSG00000266302|A2RUR9-3|CCDC144A;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A;ENST00000450277.2_1_17:18523453-18528799:-|nuORF;nc|ENSG00000291074|Q6NUI1|CCDC144NL;ENST00000340196.8_1_17:20224590-20239407:+|nuORF;ENST00000399264.1_1_17:16593591-16608727:+|nuORF;ENST00000445752.5_1_17:18506915-18528649:-|nuORF;nc|ENSG00000291090|Q3MJ40-2|CCDC144BP;nc|ENSG00000291090|Q3MJ40|CCDC144BP;nc|ENSG00000154898|Q8IYA2|CCDC144CP	nc|ENSG00000266302|A2RUR9-3|CCDC144A	nc|ENSG00000266302|A2RUR9-3|CCDC144A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2858276367188	2	565.283451	1128.55235	3.4709	0.0019621	0.8126	0.00045935	4.2836	0.0024214	565.2839493549963	26.78	0.16879	26.78	26.62	26.788	0					9	3	4	0	0	0	0.14858	1	9488	9488		80.455	18.347	1	2243000			21230	6213	13650	13706	21543	21543					-0.006784360271467449
KNTGSKVLK	9	Unmodified	_KNTGSKVLK_					0	0	0		ENST00000503463.5_1_17:46908399-46925578:+|nuORF	ENST00000503463.5_1_17:46908399-46925578:+|nuORF	ENST00000503463.5_1_17:46908399-46925578:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.802734375	2	487.803291	973.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.533	1	15.533	15.033	16.033	0								0	0	0	0.39362	1	3395	3395		11.511	3.2797	1				21231	10166	13651	13707	21544	21544					0.10417735714236187
KNTHSLFV	8	Unmodified	_KNTHSLFV_					0	0	0		nc|ENSG00000120669|Q9NX45-3|SOHLH2;SOHLH2|p.K134Nfs*48|1|0.07|ENSG00000120669|chr13:36193649-36193649|T/-|frameshift_variant;nc|ENSG00000120669|Q9NX45-2|SOHLH2;ENSG00000120669|ENST00000379881|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2589416503906	2	473.261259	944.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.1	1	32.1	31.6	32.6	0								0	0	0	1.7419	1	10691	10691		24.203	0	1				21232	11498	13652	13708	21545	21545					0.033492046173250856
KNTKLALNF	9	Unmodified	_KNTKLALNF_					0	0	0			REV__tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	REV__tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.312744140625	2	524.811116	1047.60768	2.042	0.0010717	-0.67713	-0.00035536	1.3649	0.00071629	524.81042659884	34.331	0.25147	34.331	34.23	34.481	0					11	6	3	0	0	0	0.10915	1	12763	12763		77.318	9.8239	1	127620	+		21233	21831	13653	13709	21546	21546					0.08578022231267823
KNTKTRKN	8	Unmodified	_KNTKTRKN_					0	0	0			REV__ENST00000519204.5_1_5:167690101-167690218:+|nuORF	REV__ENST00000519204.5_1_5:167690101-167690218:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2976379394531	2	495.296165	988.577777	2.8354	0.0014044	0.012421	6.1519E-06	2.8478	0.0014105	495.296066543086	33.176	0.16178	33.176	33.121	33.283	0					8	3	3	0	0	0	0.60692	1	12598	12598		37.812	37.812	1	773630	+		21234	19934	13654	13710	21547	21547					0.08303083285932189
KNTLTLMK	8	Unmodified	_KNTLTLMK_					0	0	0		tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.78076171875	2	474.78097	947.547388	0.6518	0.00030946	-0.97	-0.00046054	-0.3182	-0.00015107	474.78056184897576	22.866	0.18059	22.866	22.777	22.958	0					9	4	3	0	0	0	0.2678	1	7499	7499		93.195	7.3336	1	573640			21235	22684	13655	13711	21548	21548					0.07151588576550694
KNTQVLKK	8	Unmodified	_KNTQVLKK_					0	0	0		ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.80596923828125	2	479.805834	957.597115	-1.4045	-0.00067389	1.823	0.00087467	0.41847	0.00020078	479.80657148053206	12.645	0.072061	12.645	12.611	12.683	0					6	4	2	0	0	0	0.42778	1	2520	2520		67.494	5.8024	1	135300			21236	6689;23161	13656	13712	21549	21549					0.11662039576845018
KNTRDTINV	9	Unmodified	_KNTRDTINV_					0	0	0			REV__TBC1D15|p.R400I|1|0.26|ENSG00000121749|chr12:71897906-71897906|G/T|missense_variant	REV__TBC1D15|p.R400I|1|0.26|ENSG00000121749|chr12:71897906-71897906|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7952880859375	2	530.790912	1059.56727	3.4291	0.0018201	1.4912	0.00079153	4.9203	0.0026117	531.2929361768545	17.342	0.45918	17.342	17.005	17.464	0					28	9	5	0	0	0	0.087861	1	4960	4960		82.241	4.9229	1	5351100	+		21237	21625	13657	13713	21550	21550					0.03987055840843823
KNVAICTIGR	10	Unmodified	_KNVAICTIGR_					0	0	0			REV__tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	REV__tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.8094482421875	2	537.808051	1073.60155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.006	1	25.006	24.506	25.506	0								0	0	0	0.41767	1	7723	7723		14.137	0	1		+		21238	21939	13658	13714	21551	21551					0.06769180728110769
KNVEEQVNI	9	Unmodified	_KNVEEQVNI_					0	0	0			REV__tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	REV__tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7855834960938	2	536.785296	1071.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.802	1	25.802	25.302	26.302	0								0	0	0	0.12601	1	8257	8257		65.465	1.9315	1		+		21239	21806	13659	13715	21552	21552					0.023122337467157195
KNVKAEIPLN	10	Unmodified	_KNVKAEIPLN_					0	0	0		nc|ENSG00000143970|Q76L83-2|ASXL2;ENSG00000143970|ENST00000435504|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.3350219726562	2	563.334956	1124.65536	1.8731	0.0010552	-1.5245	-0.00085879	0.34859	0.00019637	563.334161785016	23.154	0.16801	23.154	23.044	23.212	0					7	3	3	0	0	0	0.34979	1	7952	7952		41.427	0	1	457750			21240	4592	13660	13716	21553	21553					0.09801676431470696
KNVPIPHCLL	10	Unmodified	_KNVPIPHCLL_					0	0	0			REV__ENST00000580828.1_1_17:62223339-62223660:+|nuORF	REV__ENST00000580828.1_1_17:62223339-62223660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3302001953125	2	567.328619	1132.64269	3.4714	0.0019694	-0.2761	-0.00015664	3.1953	0.0018128	567.3282896192472	52.105	1.2348	52.105	51.799	53.034	0					176	74	3	0	0	0	0.7005	1	20323	20323		21.96	1.9631	1	343240	+		21241	20450	13661	13717	21554	21554					0.08166941767581193
KNVVDQPP	8	Unmodified	_KNVVDQPP_					0	0	0			REV__ENSG00000063169|ENST00000594866|BICRA	REV__ENSG00000063169|ENST00000594866|BICRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.74542236328125	2	448.745442	895.476331	-0.45458	-0.00020399	-0.57293	-0.0002571	-1.0275	-0.00046109	448.7457470680601	14.815	1.9796	14.815	14.682	16.662	0					81	47	5	0	0	0	0.66372	1	3864	3864		38.806	0.052534	1	72580000	+		21242	13095	13662	13718	21555	21555					0.02441211863379067
KNWCLRLL	8	Unmodified	_KNWCLRLL_					0	0	0			REV__ENSG00000136485|ENST00000614556|DCAF7	REV__ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3032836914062	2	523.302404	1044.59026	3.4165	0.0017879	0.05542	2.9002E-05	3.4719	0.0018169	523.3023111187575	50.321	1.2139	50.321	50.063	51.277	0					198	69	4	0	0	0	0.70055	1	19794	19794		33.516	6.7195	1	736650	+		21243	14862	13663	13719	21556	21556					0.06974403424624143
KNWKGQVDD	9	Unmodified	_KNWKGQVDD_					0	0	0			REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2727661132812	2	545.269813	1088.52507	1.7597	0.00095953	2.2777	0.001242	4.0375	0.0022015	545.271518642035	30.354	0.2005	30.354	30.259	30.46	0					11	7	3	0	0	0	0.41113	1	9650	9650		40.778	2.9666	1	109120	+		21244	15520	13664	13720	21557	21557					-0.015649195675223382
KNYNDKIY	8	Unmodified	_KNYNDKIY_					0	0	0			REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.27001953125	2	529.269281	1056.52401	1.7391	0.00092045	-0.90201	-0.0004774	0.83708	0.00044304	529.268862057723	32.822	0.30273	32.822	32.717	33.02	0					15	7	3	0	0	0	0.5676	1	12530	12530		53.351	1.0523	1	424320	+		21245	21860	13665	13721	21558	21558					-0.0019913393641672883
KNYNFGYQ	8	Unmodified	_KNYNFGYQ_					0	0	0			REV__nc|ENSG00000146453|Q8NA58|PNLDC1	REV__nc|ENSG00000146453|Q8NA58|PNLDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2391357421875	2	517.240524	1032.46649	-1.4671	-0.00075882	-1.9977	-0.0010333	-3.4648	-0.0017921	517.2394294290949	21.32	0.62134	21.32	21.05	21.671	0					20	14	2	0	0	0	0.70055	1	6086	6086		33.516	1.9858	1	222100	+		21246	15314	13666	13722	21559	21559					-0.04843976142001338
KNYPELLL	8	Unmodified	_KNYPELLL_					0	0	0			REV__nc|ENSG00000100345|P35579-2|MYH9	REV__nc|ENSG00000100345|P35579-2|MYH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2852783203125	2	495.286943	988.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.966	1	11.966	11.466	12.466	0								0	0	0	1.7419	1	2433	2433		19.36	1.0979	1		+		21247	13544	13667	13723	21560	21560					0.0645952859136969
KNYQGRPWS	9	Unmodified	_KNYQGRPWS_					0	0	0		nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.52703857421875	3	379.192957	1134.55704	0.019494	7.392E-06	0.36249	0.00013745	0.38199	0.00014485	379.5273228427545	22.609	0.13932	22.609	22.554	22.694	0					7	4	2	0	0	0	0.60749	1	6431	6431		20.947	0.91646	1	48519			21248	5480	13668	13724	21561	21561					-0.004855070937082928
KPAILTHER	9	Unmodified	_KPAILTHER_					0	0	0		ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENST00000593745.1_1_19:59021097-59021388:-|nuORF	ENSG00000083807|ENST00000263093|SLC27A5	ENSG00000083807|ENST00000263093|SLC27A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.81494140625	2	532.81419	1063.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.97	1	16.97	16.47	17.47	0								0	0	0	0.3119	1	4163	4163		32.812	2.3088	1				21249	1701	13669	13725	21562	21562					0.08456540462793782
KPCIKYTGHY	10	Unmodified	_KPCIKYTGHY_					0	0	0		nc|ENSG00000169490|Q9BX73-2|TM2D2;ENSG00000169490|ENST00000456397|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.80712890625	2	605.307884	1208.60121	0.14991	9.0745E-05	-3.6472	-0.0022077	-3.4973	-0.002117	605.8070479675994	15.895	0.10455	15.895	15.85	15.955	0					7	5	2	0	0	0	0.57211	1	3537	3537		32.812	0	1	88443			21250	6166	13670	13726	21563	21563					0.005257610082480824
KPCLVVSIQ	9	Unmodified	_KPCLVVSIQ_					0	0	0			REV__ENST00000310271.6_1_3:52232228-52233451:+|nuORF	REV__ENST00000310271.6_1_3:52232228-52233451:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7889404296875	2	493.788795	985.563038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.331	1	21.331	20.831	21.831	0								0	0	0	0.30504	1	5861	5861		34.173	23.307	1		+		21251	18265	13671	13727	21564	21564					0.06967875093585008
KPDFLRDIQS	10	Unmodified	_KPDFLRDIQS_					0	0	0		ENSG00000115556|ENST00000450993|PLCD4	ENSG00000115556|ENST00000450993|PLCD4	ENSG00000115556|ENST00000450993|PLCD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.8291015625	2	609.827495	1217.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.335	1	27.335	26.835	27.835	0								0	0	0	0.3598	1	8698	8698		41.427	5.109	1				21252	2920	13672	13728	21565	21565					0.04032184563448027
KPDVGPKN	8	Unmodified	_KPDVGPKN_					0	0	0			REV__PIAS4|p.E235D|1|0.27|ENSG00000105229|chr19:4028752-4028752|G/T|missense_variant	REV__PIAS4|p.E235D|1|0.27|ENSG00000105229|chr19:4028752-4028752|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.73980712890625	2	427.74016	853.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.403	1	12.403	11.903	12.903	0								0	0	0	1.7419	1	2629	2629		51.335	1.8939	1		+		21253	21370	13673	13729	21566	21566					0.03317229208948902
KPEALNKKAI	10	Unmodified	_KPEALNKKAI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;ENST00000490931.1_1_1:11167544-11171580:-|nuORF	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.3468627929688	2	556.345323	1110.67609	1.1294	0.00062832	1.6497	0.0009178	2.7791	0.0015461	556.3462787198439	14.415	0.11782	14.415	14.34	14.457	0					8	4	2	0	0	0	0.34667	1	3046	3046		62.107	1.9892	1	114910			21254	7609	13674	13730	21567	21567					0.12518266811139256
KPEALNKKAI	10	Unmodified	_KPEALNKKAI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;ENST00000490931.1_1_1:11167544-11171580:-|nuORF	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.3466796875	2	556.345323	1110.67609	-0.98802	-0.00054968	2.8688	0.0015961	1.8808	0.0010464	556.3470865644802	14.408	0.11889	14.408	14.333	14.452	0					10	4	3	0	0	0	0.28036	1	3056	3056		69.628	2.6657	1	129920			21255	7609	13674	13730	21568	21568					0.12518266811139256
KPEEPVKP	8	Unmodified	_KPEEPVKP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.26605224609375	2	462.263468	922.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.983	1	11.983	11.483	12.483	0								0	0	0	1.7419	1	2441	2441		56.721	9.0637	1		+		21256	15602;22247	13675	13731	21569	21569					0.04802669040236651
KPELPKKPN	9	Unmodified	_KPELPKKPN_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8198852539062	2	525.818941	1049.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.97	1	28.97	28.47	29.47	0								0	0	0	0.18541	1	9687	9687		54.776	11.126	1				21257	2585	13676	13732	21570	21570					0.10050308748327552
KPEPSFSEY	9	Unmodified	_KPEPSFSEY_					0	0	0		nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2522583007812	2	542.253297	1082.49204	-1.4868	-0.00080624	-0.7407	-0.00040164	-2.2275	-0.0012079	542.2529481898077	17.266	0.22034	17.266	17.156	17.376	0					12	6	3	0	0	0	0.18605	1	4256	4256		63.306	9.9548	1	417070			21258	7524	13677	13733	21571	21571					-0.04590546410236129
KPFKIIVT	8	Unmodified	_KPFKIIVT_					0	0	0		nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000174600|ENST00000550402|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.3081359863281	2	473.310221	944.605889	-2.5156	-0.0011906	-1.5893	-0.00075221	-4.1048	-0.0019429	473.30950667033056	12.648	0.090884	12.648	12.594	12.685	0					10	5	3	0	0	0	0.65276	1	2463	2463		40.573	0	1	229630			21259	6502	13678	13734	21572	21572					0.13137013213338378
KPFNSRIE	8	Unmodified	_KPFNSRIE_					0	0	0			REV__THEMIS|p.V407Wfs*2|1|0.33|ENSG00000172673|chr6:127813423-127813423|T/-|frameshift_variant	REV__THEMIS|p.V407Wfs*2|1|0.33|ENSG00000172673|chr6:127813423-127813423|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7706298828125	2	495.771991	989.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.91	1	11.91	11.41	12.41	0								0	0	0	1.7419	1	2330	2330		73.975	5.1879	1		+		21260	16474	13679	13735	21573	21573					0.034245896460333825
KPFPAEFPSQ	10	Unmodified	_KPFPAEFPSQ_					0	0	0		ENST00000336034.8_1_19:42703119-42703434:-|nuORF	ENST00000336034.8_1_19:42703119-42703434:-|nuORF	ENST00000336034.8_1_19:42703119-42703434:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.2922973632812	2	574.292756	1146.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.484	1	12.484	11.984	12.984	0								0	0	0	0.4201	1	2472	2472		5.5578	0	1				21261	8697	13680	13736	21574	21574					0.003537256147183143
KPFSNTEKI	9	Unmodified	_KPFSNTEKI_					0	0	0		ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7906494140625	2	532.292756	1062.57096	-1.2707	-0.00067639	1.3061	0.00069521	0.03537	1.8827E-05	532.2938484308547	24.907	0.66986	24.907	24.626	25.296	0					47	15	4	0	0	0	0.17854	1	7744	7744		64.207	3.2353	1	911010			21262	4930	13681	13737	21575	21575					0.04217725614716983
KPFSYPNDN	9	Unmodified	_KPFSYPNDN_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2518310546875	2	541.251089	1080.48762	0.28823	0.00015601	1.5554	0.00084186	1.8436	0.00099787	541.2514455985556	37.001	0.28737	37.001	36.892	37.179	0					11	8	2	0	0	0	0.48389	1	13990	13990		34.173	0	1	91533	+		21263	14868	13682	13738	21576	21576					-0.04940010833138331
KPGDSLPTSQ	10	Unmodified	_KPGDSLPTSQ_					0	0	0		ENSG00000009709|ENST00000420770|PAX7;nc|ENSG00000009709|P23759-2|PAX7;nc|ENSG00000009709|P23759-1|PAX7	ENSG00000009709|ENST00000420770|PAX7	ENSG00000009709|ENST00000420770|PAX7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2645874023438	2	515.264196	1028.51384	0.71061	0.00036615	-1.0016	-0.0005161	-0.29102	-0.00014995	515.2642004881145	19.068	0.14543	19.068	18.975	19.121	0					8	3	3	0	0	0	0.31613	1	5115	5115		65.465	0	1	214770			21264	1027	13683	13739	21577	21577					0.0007225833833217621
KPGEPLGEDG	10	Unmodified	_KPGEPLGEDG_					0	0	0		ENST00000258443.6_2_2:109546654-109605500:-|nuORF	ENST00000258443.6_2_2:109546654-109605500:-|nuORF	ENST00000258443.6_2_2:109546654-109605500:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.28436279296875	2	499.743096	997.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.611	1	13.611	13.111	14.111	0								0	0	0	0.4201	1	3352	3352		19.104	3.4617	1				21265	8277	13684	13740	21578	21578					-0.027197170700333118
KPGKEDKLF	9	Unmodified	_KPGKEDKLF_					0	0	0		KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.8056030273438	2	531.303124	1060.5917	3.4234	0.0018189	-1.4943	-0.00079393	1.9291	0.0010249	531.3020995081282	45.51	0.50692	45.51	45.412	45.919	0					38	20	3	0	0	0	0.48389	1	18313	18313		34.173	5.0025	1	1191100			21266	1799	13685	13741	21579	21579					0.06382315994346754
KPGQEYWAL	9	Unmodified	_KPGQEYWAL_					0	0	0			REV__nc|ENSG00000167815|P32119-2|PRDX2	REV__nc|ENSG00000167815|P32119-2|PRDX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2796630859375	2	546.279649	1090.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.205	1	40.205	39.705	40.705	0								0	0	0	0.35507	1	14292	14292		24.203	5.0992	1		+		21267	19420	13686	13742	21580	21580					0.0030945644321036525
KPGQFPVLV	9	Unmodified	_KPGQFPVLV_					0	0	0		nc|ENSG00000211665|A0A075B6K0|IGLV3-16	nc|ENSG00000211665|A0A075B6K0|IGLV3-16	nc|ENSG00000211665|A0A075B6K0|IGLV3-16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.79534912109375	2	492.797478	983.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.143	1	25.143	24.643	25.643	0								0	0	0	0.32356	1	8889	8889		30.504	2.6214	1				21268	11734	13687	13743	21581	21581					0.08795538690901594
KPGTVSQQAL	10	Unmodified	_KPGTVSQQAL_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7881469726562	2	514.790381	1027.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.538	1	12.538	12.038	13.038	0								0	0	0	0.4201	1	2392	2392		12.812	3.1061	1				21269	2019	13688	13744	21582	21582					0.05352841471949432
KPHNRISP	8	Unmodified	_KPHNRISP_					0	0	0			REV__nc|nan|A0A1B0GVB3-2|C7orf78	REV__nc|nan|A0A1B0GVB3-2|C7orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7713928222656	2	474.772326	947.530098	0.30006	0.00014246	-2.2445	-0.0010656	-1.9444	-0.00092315	474.7713365959197	17.063	0.13679	17.063	16.98	17.117	0					5	3	2	0	0	0	0.65276	1	4759	4759		40.573	1.3198	1	426220	+		21270	17633	13689	13745	21583	21583					0.05423429085760745
KPHPSPTSLS	10	Unmodified	_KPHPSPTSLS_					0	0	0		ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7846069335938	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.036	1	19.036	18.536	19.536	0								0	0	0	0.37129	1	5089	5089		39.253	5.0803	1				21271	3272	13690	13746	21584	21584					0.027765549549030766
KPHTAAYKP	9	Unmodified	_KPHTAAYKP_					0	0	0			REV__nc|ENSG00000185267|Q49AH0-2|CDNF	REV__nc|ENSG00000185267|Q49AH0-2|CDNF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7828063964844	2	506.782359	1011.55016	0.83739	0.00042437	-0.76371	-0.00038704	0.073673	3.7336E-05	506.7819817072541	30.506	0.22495	30.506	30.416	30.641	0					8	5	2	0	0	0	0.36892	1	11015	11015		44.377	0.26039	1	43033	+		21272	17016	13691	13747	21585	21585					0.04485180025699265
KPIDKKAP	8	Unmodified	_KPIDKKAP_					0	0	0		ENSG00000092820|ENST00000367075|EZR;MSN|p.P297Afs*2|1|0.34|ENSG00000147065|chrX:65735356-65735357|-/A|frameshift_variant;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;nc|ENSG00000137710|P35241-4|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.781494140625	2	448.781828	895.549102	-0.3025	-0.00013576	-0.54559	-0.00024485	-0.84809	-0.00038061	448.78159868376554	20.113	0.22221	20.113	19.992	20.214	0					10	7	2	0	0	0	0.7914	1	5361	5361		14.664	0.88877	1	48752			21273	1878;4764;4186	13692	13748	21586	21586					0.09714965656803543
KPIESFNEY	9	Unmodified	_KPIESFNEY_					0	0	0		nc|ENSG00000085788|O94830-2|DDHD2;ENSG00000085788|ENST00000397166|DDHD2;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000085788|O94830-2|DDHD2	nc|ENSG00000085788|O94830-2|DDHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.77490234375	2	563.774396	1125.53424	0.40312	0.00022727	0.33338	0.00018795	0.7365	0.00041522	563.7748257118078	33.408	0.44983	33.408	33.21	33.659	0					27	11	3	0	0	0	0.24334	1	12327	12327		56.434	13.959	1	349610			21274	1735	13693	13749	21587	21587					-0.02350571001852586
KPIESFNEY	9	Unmodified	_KPIESFNEY_					0	0	0		nc|ENSG00000085788|O94830-2|DDHD2;ENSG00000085788|ENST00000397166|DDHD2;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000085788|O94830-2|DDHD2	nc|ENSG00000085788|O94830-2|DDHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.774658203125	2	563.774396	1125.53424	-1.0369	-0.00058455	2.5356	0.0014295	1.4987	0.00084493	563.7759230107125	33.191	0.3317	33.191	33.083	33.414	0					16	10	2	0	0	0	0.16806	1	11621	11621		65.465	16.024	1	68641			21275	1735	13693	13749	21588	21588					-0.02350571001852586
KPILQFTVI	9	Unmodified	_KPILQFTVI_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.5572509765625	3	353.558466	1057.65357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.459	1	17.459	16.959	17.959	0								0	0	0	0.3119	1	4378	4378		32.812	3.6424	1		+		21276	14732	13694	13750	21589	21589					0.12704667413504467
KPITTGGVTY	10	Unmodified	_KPITTGGVTY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7877807617188	2	518.787307	1035.56006	0.056612	2.937E-05	3.8467	0.0019956	3.9034	0.002025	518.789923288767	28.287	0.37415	28.287	28.152	28.526	0					31	9	4	0	0	0	0.13663	1	9966	9966		89.029	22.6	1	1849600			21277	2926	13695	13751	21590	21590					0.043703232404368464
KPITTGGVTY	10	Unmodified	_KPITTGGVTY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.78759765625	2	518.787307	1035.56006	0.14405	7.4729E-05	1.1613	0.00060244	1.3053	0.00067717	518.7879998315693	28.062	0.2508	28.062	27.931	28.182	0					24	9	3	0	0	0	0.12383	1	8996	8996		91.265	27.959	1	584620			21278	2926	13695	13751	21591	21591					0.043703232404368464
KPITTGGVTY	10	Unmodified	_KPITTGGVTY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7874755859375	2	518.787307	1035.56006	1.6019	0.00083104	-0.6527	-0.00033861	0.9492	0.00049243	518.7870074329967	28.323	0.3063	28.323	28.126	28.432	0					19	6	4	0	0	0	0.12383	1	10356	10356		91.265	40.073	1	3314700			21279	2926	13695	13751	21592	21592					0.043703232404368464
KPITTGGVTY	10	Unmodified	_KPITTGGVTY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7871704101562	2	518.787307	1035.56006	-1.3857	-0.00071889	2.9006	0.0015048	1.5149	0.0007859	518.7891003580918	28.14	0.34453	28.14	27.981	28.325	0					21	8	4	0	0	0	0.49411	1	9254	9254		45.972	5.1941	1	768770			21280	2926	13695	13751	21593	21593					0.043703232404368464
KPITTGGVTY	10	Unmodified	_KPITTGGVTY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7874755859375	2	518.787307	1035.56006	3.3491	0.0017375	-1.7154	-0.00088992	1.6337	0.00084754	518.7866099892605	28.237	0.3685	28.237	28.126	28.495	0					22	7	4	0	0	0	0.12383	1	10193	10193		91.265	45.293	1	4266000			21281	2926	13695	13751	21594	21594					0.043703232404368464
KPIVCFVQ	8	Unmodified	_KPIVCFVQ_					0	0	0			REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.266845703125	2	467.264956	932.515359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.652	1	19.652	19.152	20.152	0								0	0	0	1.7419	1	5124	5124		24.203	3.7209	1		+		21282	15875	13696	13752	21595	21595					0.04640220893395508
KPKANSEHNG	10	Unmodified	_KPKANSEHNG_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2740478515625	2	541.272887	1080.53122	1.3341	0.00072214	0.93877	0.00050813	2.2729	0.0012303	541.2734852744575	17.933	0.26948	17.933	17.802	18.072	0					12	5	3	0	0	0	0.52275	1	5416	5416		42.864	2.2917	1	400840			21283	5646	13697	13753	21596	21596					-0.005824013360097524
KPKATEEPK	9	Unmodified	_KPKATEEPK_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.1976013183594	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.367	1	36.367	35.867	36.867	0								0	0	0	0.36609	1	11923	11923		20.947	0	1		+		21284	14158	13698	13754	21597	21597					0.05873725614696923
KPKEKKKGP	9	Unmodified	_KPKEKKKGP_					0	0	0		ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.2257995605469	3	347.225598	1038.65496	3.0311	0.0010525	-2.4658	-0.0008562	0.56525	0.00019627	347.2248124524663	11.341	0.039937	11.341	11.316	11.356	0					4	2	2	0	0	0	0.4966	1	2191	2191		32.812	4.7309	1	31224			21285	7915	13699	13755	21598	21598					0.13718301502285613
KPKKGPAKN	9	Unmodified	_KPKKGPAKN_					0	0	0		ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.3059387207031	2	484.306001	966.597449	0.62492	0.00030265	-1.0107	-0.0004895	-0.3858	-0.00018685	484.30543051195923	23.53	0.1719	23.53	23.444	23.616	0					8	4	2	0	0	0	0.38666	1	7819	7819		44.117	12.162	1	348850			21286	10410	13700	13756	21599	21599					0.11281459296708363
KPKKVPGEKP	10	Unmodified	_KPKKVPGEKP_					0	0	0		nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.3483276367188	2	554.347866	1106.68118	0.95976	0.00053204	0.15051	8.3435E-05	1.1103	0.00061547	554.3477410275813	35.745	0.36234	35.745	35.586	35.948	0					13	7	2	0	0	0	0.54197	1	13841	13841		40.778	2.9666	1	73449			21287	2867	13701	13757	21600	21600					0.13210570673754773
KPKMHLTP	8	Unmodified	_KPKMHLTP_					0	0	0			REV__MPHOSPH9|p.T1047Nfs*4|1|0.3|ENSG00000051825|chr12:123161377-123161378|-/T|frameshift_variant	REV__MPHOSPH9|p.T1047Nfs*4|1|0.3|ENSG00000051825|chr12:123161377-123161378|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.277099609375	2	476.275855	950.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.527	1	11.527	11.027	12.027	0								0	0	0	1.7419	1	2251	2251		18.324	2.6882	1		+		21288	13036	13702	13758	21601	21601					0.059910256419584584
KPKNEFAE	8	Unmodified	_KPKNEFAE_					0	0	0		nc|ENSG00000113597|A5PLN9-7|TRAPPC13;ENST00000512009.5_1_5:64920875-64956772:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	nc|ENSG00000113597|A5PLN9-7|TRAPPC13	nc|ENSG00000113597|A5PLN9-7|TRAPPC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7521057128906	2	481.750724	961.486896	-0.11349	-5.4674E-05	1.1019	0.00053082	0.98837	0.00047615	481.75236876379716	23.065	0.21923	23.065	22.958	23.177	0					12	5	3	0	0	0	0.58597	1	7585	7585		51.335	5.3835	1	276200			21289	2814	13703	13759	21602	21602					0.0046119451779986775
KPKNPHALRST	11	Unmodified	_KPKNPHALRST_					0	0	0			REV__nc|ENSG00000206053|Q9H910-2|JPT2	REV__nc|ENSG00000206053|Q9H910-2|JPT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	624.8611450195312	2	624.862203	1247.70985	0.75032	0.00046885	-3.3776	-0.0021105	-2.6273	-0.0016417	624.859903869299	21.569	0.097773	21.569	21.502	21.6	0					5	3	2	0	0	0	0.53842	1	6216	6216		41.427	0	1	100760	+		21290	17538	13704	13760	21603	21603					0.09590688302864692
KPLAALACSPC	11	Unmodified	_KPLAALACSPC_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.27978515625	2	537.277738	1072.54092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.131	1	31.131	30.631	31.631	0								0	0	0	0.40299	1	10684	10684		36.447	6.129	1		+		21291	14338	13705	13761	21604	21604					0.0075532735352226155
KPLLESVPYE	10	Unmodified	_KPLLESVPYE_					0	0	0		nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;PPP1R21|p.Y693Mfs*21|1|0.22|ENSG00000162869|chr2:48507373-48507373|T/-|frameshift_variant;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2149658203125	3	392.216657	1173.62814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.932	1	14.932	14.432	15.432	0								0	0	0	0.4146	1	3982	3982		26.063	4.3776	1				21292	5505	13706	13762	21605	21605					0.04827148100434897
KPLQPLPNT	9	Unmodified	_KPLQPLPNT_					0	0	0		ENST00000436442.2_2_6:30314274-30314587:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000436442.2_2_6:30314274-30314587:+|nuORF	ENST00000436442.2_2_6:30314274-30314587:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.448	1	24.448	23.948	24.948	0								0	0	0	0.3428	1	7217	7217		20.837	0	1				21293	7939	13707	13763	21606	21606					0.0781033333993264
KPMGKVVTY	9	Unmodified	_KPMGKVVTY_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7893371582031	2	511.788795	1021.56304	0.46139	0.00023614	-0.73495	-0.00037614	-0.27356	-0.00014	511.7886063956247	22.747	0.31714	22.747	22.66	22.978	0					14	6	3	0	0	0	0.13267	1	7744	7744		71.877	31.305	1	256390			21294	2550	13708	13764	21607	21607					0.05311875093570961
KPMGKVVTY	9	Unmodified	_KPMGKVVTY_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7889404296875	2	511.788795	1021.56304	0.038853	1.9884E-05	0.2066	0.00010573	0.24545	0.00012562	511.78876788999725	22.797	0.3181	22.797	22.638	22.956	0					16	6	3	0	0	0	0.07136	1	7625	7625		87.696	45.222	1	336060			21295	2550	13708	13764	21608	21608					0.05311875093570961
KPMKIKSKK	9	Unmodified	_KPMKIKSKK_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.23876953125	3	363.23885	1086.69472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.894	1	24.894	24.394	25.394	0								0	0	0	0.37233	1	8768	8768		19.104	1.6355	1		+		21296	14419	13709	13765	21609	21609					0.1548410518134915
KPMNQLAQHS	10	Unmodified	_KPMNQLAQHS_					0	0	0			REV__ENSG00000168434|ENST00000307149|COG7	REV__ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.2925415039062	2	577.292765	1152.57098	-0.074884	-4.323E-05	0.47167	0.00027229	0.39678	0.00022906	577.292968495008	10.688	0.043792	10.688	10.647	10.691	0					4	2	2	0	0	0	0.56931	1	2037	2037		37.812	0.65241	1	100180	+		21297	16259	13710	13766	21610	21610					0.0007940234308989602
KPNDVIKL	8	Unmodified	_KPNDVIKL_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.78753662109375	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.071	1	35.071	34.571	35.571	0								0	0	0	1.7419	1	12465	12465		42.396	2.338	1		+		21298	16278	13711	13767	21611	21611					0.09390948311227021
KPNGLILQY	9	Unmodified	_KPNGLILQY_					0	0	0		ENST00000515333.1_1_6:83900509-83900731:-|nuORF;ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENST00000515333.1_1_6:83900509-83900731:-|nuORF	ENST00000515333.1_1_6:83900509-83900731:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3071899414062	2	523.305667	1044.59678	0.76937	0.00040262	0.015391	8.0542E-06	0.78476	0.00041067	523.3057571900025	39.254	0.3096	39.254	39.112	39.421	0					29	18	2	0	0	0	0.45358	1	12755	12755		37.159	2.9866	1	86963			21299	1065	13712	13768	21612	21612					0.0762661985700106
KPNGLILQY	9	Unmodified	_KPNGLILQY_					0	0	0		ENST00000515333.1_1_6:83900509-83900731:-|nuORF;ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENST00000515333.1_1_6:83900509-83900731:-|nuORF	ENST00000515333.1_1_6:83900509-83900731:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3060302734375	2	523.305667	1044.59678	1.7921	0.00093781	-1.3593	-0.00071132	0.43281	0.00022649	523.3049856702933	39.569	0.76604	39.569	39.127	39.893	0					56	26	4	0	0	0	0.30951	1	15547	15547		49.442	5.0644	1	397480			21300	1065	13712	13768	21613	21613					0.0762661985700106
KPNKPLILAN	10	Unmodified	_KPNKPLILAN_					0	0	0		ENSG00000172586|ENST00000372833|CHCHD1	ENSG00000172586|ENST00000372833|CHCHD1	ENSG00000172586|ENST00000372833|CHCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.348876953125	2	554.347866	1106.68118	0.5081	0.00028166	1.1893	0.00065928	1.6974	0.00094094	554.348703430945	35.853	0.32494	35.853	35.648	35.973	0					15	9	2	0	0	0	0.61187	1	13895	13895		32.812	4.7309	1	96726			21301	6373	13713	13769	21614	21614					0.13210570673754773
KPNPGSNKP	9	Unmodified	_KPNPGSNKP_					0	0	0		MRPL15|p.K34N|1|0.16|ENSG00000137547|chr8:54135385-54135385|G/T|missense_variant	MRPL15|p.K34N|1|0.16|ENSG00000137547|chr8:54135385-54135385|G/T|missense_variant	MRPL15|p.K34N|1|0.16|ENSG00000137547|chr8:54135385-54135385|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7562561035156	2	469.756341	937.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.996	1	15.996	15.496	16.496	0								0	0	0	0.2591	1	3749	3749		42.396	0	1				21302	11374	13714	13770	21615	21615					0.02688016611944022
KPNRFNSK	8	Unmodified	_KPNRFNSK_					0	0	0			REV__ENST00000425888.1_1_3:196294085-196295387:-|nuORF	REV__ENST00000425888.1_1_3:196294085-196295387:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.77752685546875	2	495.777608	989.540663	0.53715	0.00026631	-1.0408	-0.00051603	-0.5037	-0.00024972	495.77705394585695	18.539	0.18341	18.539	18.445	18.629	0					7	4	2	0	0	0	0.51384	1	5430	5430		58.782	2.0609	1	133390	+		21303	18389	13715	13771	21616	21616					0.04547411740179541
KPNSQDGGEV	10	Unmodified	_KPNSQDGGEV_					0	0	0			REV__nc|ENSG00000070814|Q13428-2|TCOF1	REV__nc|ENSG00000070814|Q13428-2|TCOF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7432861328125	2	515.743628	1029.4727	0.22087	0.00011391	4.351	0.002244	4.5718	0.0023579	515.7453653422937	17.164	0.1699	17.164	17.033	17.203	0					6	5	2	0	0	0	0.7315	1	4009	4009		16.717	1.0756	1	135650	+		21304	13180	13716	13772	21617	21617					-0.0408550270115029
KPPKTEYD	8	Unmodified	_KPPKTEYD_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8|KAT14	REV__nc|ENSG00000149474|Q9H8E8|KAT14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.25054931640625	2	489.250557	976.486562	-2.8657	-0.001402	2.6586	0.0013007	-0.2071	-0.00010132	489.25214475776335	17.164	0.068699	17.164	17.12	17.189	0					4	2	2	0	0	0	0.61938	1	4228	4228		45.952	1.8352	1	196880	+		21305	15421	13717	13773	21618	21618					-0.002622252020501037
KPPTPKAAA	9	Unmodified	_KPPTPKAAA_					0	0	0			REV__nc|ENSG00000159140|P18583-2|SON	REV__nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.7662353515625	2	440.766178	879.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.321	1	14.321	13.821	14.821	0								0	0	0	0.30504	1	2937	2937		34.173	3.6689	1		+		21306	15702	13718	13774	21619	21619					0.07322392622688767
KPQLALSDQI	10	Unmodified	_KPQLALSDQI_					0	0	0			REV__PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant	REV__PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.8193359375	2	556.819138	1111.62372	-0.14867	-8.278E-05	0.75896	0.00042261	0.6103	0.00033983	556.8194136091996	27.347	0.16768	27.347	27.237	27.405	0					6	3	2	0	0	0	0.47859	1	9911	9911		47.657	0	1	201660	+		21307	21368	13719	13775	21620	21620					0.07237683677522
KPQLEKPR	8	Unmodified	_KPQLEKPR_					0	0	0			REV__ENSG00000006194|ENST00000219069|ZNF263	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.3046569824219	2	498.303458	994.592364	0.82155	0.00040938	1.4362	0.00071567	2.2578	0.001125	498.30412483081915	20.822	0.41585	20.822	20.612	21.028	0					15	8	3	0	0	0	0.49216	1	6822	6822		50.025	11.218	1	1048500	+		21308	12848	13720	13776	21621	21621					0.09485155434083481
KPQQYSKPL	9	Unmodified	_KPQQYSKPL_					0	0	0			REV__SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	REV__SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.54205322265625	3	363.541475	1087.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.153	1	23.153	22.653	23.653	0								0	0	0	0.35737	1	6917	6917		23.523	4.4192	1		+		21309	16310	13721	13777	21622	21622					0.062297183686723656
KPRALVCH	8	Unmodified	_KPRALVCH_					0	0	0			REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2665710449219	2	462.265822	922.517091	-0.72008	-0.00033287	1.2849	0.00059399	0.56487	0.00026112	462.2665244900698	11.945	0.16337	11.945	11.844	12.007	0					12	5	3	0	0	0	0.64096	1	2399	2399		42.474	5.446	1	640350	+		21310	15844	13722	13778	21623	21623					0.05273274702005892
KPRGRKKK	8	Unmodified	_KPRGRKKK_					0	0	0			REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.3420715332031	2	499.34071	996.666866	3.3901	0.0016928	-0.087106	-4.3496E-05	3.303	0.0016493	499.3406729586168	26.29	0.14938	26.29	26.216	26.366	0					9	4	3	0	0	0	0.59773	1	8241	8241		47.916	0	1	298280	+		21311	15500	13723	13779	21624	21624					0.16839963036125027
KPRLNQLY	8	Unmodified	_KPRLNQLY_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;XAB2|p.A48T|1|0.2|ENSG00000076924|chr19:7628208-7628208|C/T|missense_variant;ENST00000595288.5_1_19:7692923-7693151:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.3014526367188	2	516.303458	1030.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.538	1	11.538	11.038	12.038	0								0	0	0	1.7419	1	2256	2256		19.36	2.655	1				21312	1569	13724	13780	21625	21625					0.07829155434069435
KPRPAAAAPS	10	Unmodified	_KPRPAAAAPS_					0	0	0		nc|ENSG00000148057|Q5T6J7-2|IDNK	nc|ENSG00000148057|Q5T6J7-2|IDNK	nc|ENSG00000148057|Q5T6J7-2|IDNK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.52239990234375	3	322.522414	964.545414	-1.9067	-0.00061495	1.558	0.00050248	-0.34873	-0.00011247	322.5230087880248	15.3	0.08602	15.3	15.255	15.341	0					4	2	2	0	0	0	0.65895	1	3411	3411		27.047	0.98393	1	781310			21313	11576	13725	13781	21626	21626					0.061722958829250274
KPRPALSTVF	10	Unmodified	_KPRPALSTVF_					0	0	0			REV__ENST00000376030.6_1_1:14925446-14925491:+|nuORF	REV__ENST00000376030.6_1_1:14925446-14925491:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.3330688476562	2	558.332216	1114.64988	3.468	0.0019363	-2.8603	-0.001597	0.60778	0.00033934	558.3307918475123	45.374	0.14058	45.374	45.279	45.42	0					12	6	2	0	0	0	0.59277	1	18172	18172		35.152	7.2698	1	56992	+		21314	18713	13726	13782	21627	21627					0.0971399763966474
KPRRSFTPY	9	Unmodified	_KPRRSFTPY_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.3185424804688	2	576.31964	1150.62473	-0.31589	-0.00018205	-3.1142	-0.0017948	-3.4301	-0.0019768	576.3179933467434	33.989	0.28217	33.989	33.891	34.173	0					13	6	3	0	0	0	0.33044	1	13067	13067		47.657	6.8792	1	107400	+		21315	15446	13727	13783	21628	21628					0.05543942837107352
KPRSPRDSGP	10	Unmodified	_KPRSPRDSGP_					0	0	0		nc|ENSG00000166220|Q96M53-2|TBATA;nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7971801757812	2	548.796529	1095.5785	1.8499	0.0010152	-0.45591	-0.0002502	1.394	0.00076503	548.7961106064662	13.473	0.19255	13.473	13.38	13.572	0					11	4	4	0	0	0	0.56931	1	3148	3148		37.812	0	1	429250			21316	5873	13728	13784	21629	21629					0.034538779349986726
KPSAAGGRE	9	Unmodified	_KPSAAGGRE_					0	0	0			REV__ENST00000444836.5_1_1:12071645-12071879:+|nuORF	REV__ENST00000444836.5_1_1:12071645-12071879:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.73223876953125	2	436.732866	871.451179	-0.40731	-0.00017788	-0.11914	-5.203E-05	-0.52644	-0.00022992	436.73277200524234	11.381	0.20551	11.381	11.236	11.442	0					18	11	2	0	0	0	0.48389	1	2171	2171		34.173	3.6689	1	103670	+		21317	19268	13729	13785	21630	21630					0.010311570608109832
KPSADPDN	8	Unmodified	_KPSADPDN_					0	0	0		PCDHGA4|p.D717N|1|0.33|ENSG00000262576|chr5:141357256-141357256|G/A|missense_variant	PCDHGA4|p.D717N|1|0.33|ENSG00000262576|chr5:141357256-141357256|G/A|missense_variant	PCDHGA4|p.D717N|1|0.33|ENSG00000262576|chr5:141357256-141357256|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.1955261230469	2	422.195782	842.377011	-0.95689	-0.00040399	-2.9618	-0.0012505	-3.9187	-0.0016545	422.1958936633537	42.741	0.74523	42.741	42.377	43.122	0					89	45	3	0	0	0	0.7126	1	14037	14037		31.955	1.4512	1	244660			21318	11910	13730	13786	21631	21631					-0.050482308213872784
KPSIQATMC	9	Carbamidomethyl (C)	_KPSIQATMC(Carbamidomethyl (C))_	KPSIQATMC(1)		KPSIQATMC(71)		0	1	0			REV__ENST00000397002.6_1_14:24550209-24550419:-|nuORF	REV__ENST00000397002.6_1_14:24550209-24550419:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2527465820312	2	518.25172	1034.48889	3.3402	0.001731	-1.061	-0.00054986	2.2792	0.0011812	518.2510912175711	14.583	1.0131	14.583	13.732	14.745	0					32	20	3	0	0	0	0.13519	1	3670	3670		71.296	19.96	1	2434800	+		21319	18906	13731	13787	21632	21632	677				-0.02697836060269765
KPSITPVPAK	10	Unmodified	_KPSITPVPAK_					0	0	0		TCTE1|p.S38A|1|0.21|ENSG00000146221|chr6:44287714-44287714|A/C|missense_variant;TCTE1|p.P114Lfs*7|1|0.21|ENSG00000146221|chr6:44286469-44286469|G/-|frameshift_variant;ENSG00000146221|ENST00000371505|TCTE1	TCTE1|p.S38A|1|0.21|ENSG00000146221|chr6:44287714-44287714|A/C|missense_variant	TCTE1|p.S38A|1|0.21|ENSG00000146221|chr6:44287714-44287714|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.3204956054688	2	519.321317	1036.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.332	1	14.332	13.832	14.832	0								0	0	0	0.4201	1	3468	3468		12.812	0	1				21320	4717	13732	13788	21633	21633					0.11123192891068356
KPSLISQLEQ	10	Unmodified	_KPSLISQLEQ_					0	0	0		nc|ENSG00000167785|Q96NG5-2|ZNF558;ENST00000597304.5_1_19:8921959-8932201:-|nuORF;ENSG00000167785|ENST00000601372|ZNF558	nc|ENSG00000167785|Q96NG5-2|ZNF558	nc|ENSG00000167785|Q96NG5-2|ZNF558	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.8248901367188	2	571.824421	1141.63429	-0.059953	-3.4282E-05	0.59117	0.00033804	0.53122	0.00030376	571.8249975267239	13.931	0.17481	13.931	13.886	14.061	0					7	4	3	0	0	0	0.54861	1	3292	3292		40.058	0.80534	1	126450			21321	6028	13733	13789	21634	21634					0.0691366633193411
KPSLKGSKSSA	11	Unmodified	_KPSLKGSKSSA_					0	0	0		ENST00000424768.1_1_7:105926115-105926304:-|nuORF	ENST00000424768.1_1_7:105926115-105926304:-|nuORF	ENST00000424768.1_1_7:105926115-105926304:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3172607421875	2	545.316763	1088.61897	2.3505	0.0012818	-0.16529	-9.0134E-05	2.1852	0.0011916	545.3165565870584	51.035	1.0997	51.035	50.832	51.932	0					96	70	3	0	0	0	0.71641	1	15780	15780		26.063	4.3776	1	141560			21322	9423	13734	13790	21635	21635					0.07820799534783873
KPSLKGSKSSA	11	Unmodified	_KPSLKGSKSSA_					0	0	0		ENST00000424768.1_1_7:105926115-105926304:-|nuORF	ENST00000424768.1_1_7:105926115-105926304:-|nuORF	ENST00000424768.1_1_7:105926115-105926304:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3182373046875	2	545.316763	1088.61897	1.9515	0.0010642	0.58801	0.00032065	2.5395	0.0013849	545.3169132646261	51.466	1.0895	51.466	51.021	52.11	0					94	64	2	0	0	0	0.73562	1	20035	20035		24.232	1.6522	1	146840			21323	9423	13734	13790	21636	21636					0.07820799534783873
KPSSSSRKN	9	Unmodified	_KPSSSSRKN_					0	0	0		ENSG00000174469|ENST00000361727|CNTNAP2;CNTNAP2|p.H1113Pfs*52|1|0.35|ENSG00000174469|chr7:148229731-148229732|-/C|frameshift_variant;CNTNAP2|p.W833Gfs*18|1|0.41|ENSG00000174469|chr7:148118226-148118226|C/-|frameshift_variant	ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.77008056640625	2	495.76998	989.525407	0.9476	0.00046979	-1.3442	-0.00066642	-0.39662	-0.00019663	495.76937921713517	12.14	0.099449	12.14	12.049	12.148	0					6	2	3	0	0	0	0.14603	1	2505	2505		68.787	2.3575	1	508080			21324	581	13735	13791	21637	21637					0.030225001523376704
KPSVIFGQASH	11	Unmodified	_KPSVIFGQASH_					0	0	0		ENST00000341154.10_1_1:24304473-24304647:-|nuORF	ENST00000341154.10_1_1:24304473-24304647:-|nuORF	ENST00000341154.10_1_1:24304473-24304647:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.81494140625	2	585.81693	1169.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.245	1	44.245	43.745	44.745	0								0	0	0	0.42444	1	17728	17728		31.634	1.3165	1				21325	8733	13736	13792	21638	21638					0.04128219254607757
KPTELCAGHL	10	Unmodified	_KPTELCAGHL_					0	0	0		CON__P06868	CON__P06868	CON__P06868	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2804565429688	2	534.778959	1067.54336	0.57617	0.00030813	2.0609	0.0011021	2.6371	0.0014103	535.2802204053861	30.886	0.34725	30.886	30.697	31.044	0					34	14	4	0	0	0	0.54197	1	9841	9841		40.778	1.5253	1	172100		+	21326	632	13737	13793	21639	21639					0.012294990828195296
KPTEQHCR	8	Unmodified	_KPTEQHCR_					0	0	0			REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.4993896484375	3	333.499392	997.476348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.509	1	12.509	12.009	13.009	0								0	0	0	1.7419	1	2677	2677		21.96	1.013	1		+		21327	16896	13738	13794	21640	21640					-0.022491114082754393
KPTFKDLQ	8	Unmodified	_KPTFKDLQ_					0	0	0			REV__ENSG00000206113|ENST00000635017|CFAP99	REV__ENSG00000206113|ENST00000635017|CFAP99	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2792663574219	2	488.776742	975.538931	0.76606	0.00037443	-0.42985	-0.0002101	0.33621	0.00016433	488.77628070563276	31.375	0.62551	31.375	31.043	31.668	0					20	15	2	0	0	0	0.6088	1	11503	11503		47.657	1.7054	1	328990	+		21328	17540	13739	13795	21641	21641					0.05018357931567152
KPTKSFTISEM	11	Unmodified	_KPTKSFTISEM_					0	0	0			REV__GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant	REV__GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	634.8331909179688	2	634.831388	1267.64822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.28	1	15.28	14.78	15.78	0								0	0	0	0.45674	1	3391	3391		16.717	1.8525	1		+		21329	17014	13740	13796	21642	21642					0.025105757687242658
KPTLWAPWPGQ	11	Unmodified	_KPTLWAPWPGQ_					0	0	0		chr2:218430878-218432798|98|23.71|0.17|7.11|+|0|VIL1,None|2	chr2:218430878-218432798|98|23.71|0.17|7.11|+|0|VIL1,None|2	chr2:218430878-218432798|98|23.71|0.17|7.11|+|0|VIL1,None|2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	640.84423828125	2	640.842948	1279.67134	1.0469	0.00067087	1.1924	0.00076413	2.2392	0.001435	640.8437020623612	13.492	0.10109	13.492	13.449	13.55	0					11	5	3	0	0	0	0.27635	1	2784	2784		47.96	5.0953	1	348210			21330	529	13741	13797	21643	21643					0.04269382668348953
KPTPRSGFS	9	Unmodified	_KPTPRSGFS_					0	0	0		KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7641906738281	2	488.764166	975.513779	0.52049	0.0002544	-1.2434	-0.00060775	-0.72295	-0.00035335	488.76360602403923	16.212	0.12068	16.212	16.132	16.253	0					5	3	2	0	0	0	0.37197	1	3804	3804		44.117	6.3053	1	67292			21331	11259	13742	13798	21644	21644					0.02504303129001073
KPTTRMNK	8	Oxidation (M)	_KPTTRM(Oxidation (M))NK_		KPTTRM(1)NK		KPTTRM(100)NK	0	0	1			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.271240234375	2	496.271301	990.528049	-0.061074	-3.0309E-05	-0.066247	-3.2877E-05	-0.12732	-6.3186E-05	496.2713217063622	14.951	0.11828	14.951	14.893	15.012	0					7	4	2	0	0	0	0.24915	1	3166	3166		102.77	15.019	1	239990	+		21332	16001	13743	13799	21645	21645		613			0.03240632285644551
KPTTRMNK	8	Oxidation (M)	_KPTTRM(Oxidation (M))NK_		KPTTRM(1)NK		KPTTRM(71)NK	0	0	1			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2715148925781	2	496.271301	990.528049	-1.1965	-0.00059381	1.1114	0.00055158	-0.085099	-4.2232E-05	496.27183340323336	14.998	0.094643	14.998	14.945	15.039	0					6	4	2	0	0	0	0.3961	1	3348	3348		71.296	7.0884	1	111020	+		21333	16001	13743	13799	21646	21646		613			0.03240632285644551
KPTVDLAHT	9	Unmodified	_KPTVDLAHT_					0	0	0		ZC3H6|p.K443T|2|0.25|ENSG00000188177|chr2:112322890-112322890|A/C|missense_variant	ZC3H6|p.K443T|2|0.25|ENSG00000188177|chr2:112322890-112322890|A/C|missense_variant	ZC3H6|p.K443T|2|0.25|ENSG00000188177|chr2:112322890-112322890|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2717590332031	2	491.271824	980.529095	-0.56421	-0.00027718	0.4777	0.00023468	-0.086514	-4.2502E-05	491.27197174289074	21.492	0.46643	21.492	21.238	21.704	0					22	9	4	0	0	0	0.2873	1	6994	6994		51.335	3.6781	1	686930			21334	23132	13744	13800	21647	21647					0.03805169926170038
KPVDPIVGY	9	Unmodified	_KPVDPIVGY_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.T1046Qfs*7|2|0.22|ENSG00000111799|chr6:75156372-75156372|G/-|frameshift_variant;COL12A1|p.R56I|1|0.31|ENSG00000111799|chr6:75194854-75194854|C/A|missense_variant;COL12A1|p.I57T|1|0.14|ENSG00000111799|chr6:75194851-75194851|A/G|missense_variant;COL12A1|p.I210Nfs*4|1|0.18|ENSG00000111799|chr6:75189581-75189582|-/T|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.27880859375	2	494.279118	986.543683	-0.067053	-3.3143E-05	-0.27451	-0.00013568	-0.34156	-0.00016883	494.2789722280549	35.679	0.545	35.679	35.454	35.999	0					62	27	3	0	0	0	0.24095	2	11654	11654;11771		56.721	27.571	1	478910			21335	594	13745	13801	21648;21649	21648					0.0498724207432133
KPVDPIVGY	9	Unmodified	_KPVDPIVGY_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.T1046Qfs*7|2|0.22|ENSG00000111799|chr6:75156372-75156372|G/-|frameshift_variant;COL12A1|p.R56I|1|0.31|ENSG00000111799|chr6:75194854-75194854|C/A|missense_variant;COL12A1|p.I57T|1|0.14|ENSG00000111799|chr6:75194851-75194851|A/G|missense_variant;COL12A1|p.I210Nfs*4|1|0.18|ENSG00000111799|chr6:75189581-75189582|-/T|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2788391113281	2	494.279118	986.543683	-0.45166	-0.00022325	-0.26523	-0.0001311	-0.71689	-0.00035434	494.2790961014156	35.974	0.7264	35.974	35.558	36.285	0					44	19	3	0	0	0	0.17854	2	13468	13468;13624		64.207	35.058	1	2333300			21336	594	13745	13801	21650;21651	21650					0.0498724207432133
KPVDPIVGY	9	Unmodified	_KPVDPIVGY_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.T1046Qfs*7|2|0.22|ENSG00000111799|chr6:75156372-75156372|G/-|frameshift_variant;COL12A1|p.R56I|1|0.31|ENSG00000111799|chr6:75194854-75194854|C/A|missense_variant;COL12A1|p.I57T|1|0.14|ENSG00000111799|chr6:75194851-75194851|A/G|missense_variant;COL12A1|p.I210Nfs*4|1|0.18|ENSG00000111799|chr6:75189581-75189582|-/T|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2790832519531	2	494.279118	986.543683	0.66684	0.0003296	-1.8016	-0.00089052	-1.1348	-0.00056091	494.2785684236571	35.968	0.93523	35.968	35.459	36.394	0					67	27	4	0	0	0	0.25716	2	13917	13917;14076		54.776	25.627	1	1568300			21337	594	13745	13801	21652;21653	21652					0.0498724207432133
KPVHTPGNLP	10	Unmodified	_KPVHTPGNLP_					0	0	0		ENST00000304032.12_1_2:237036554-237036818:+|nuORF	ENST00000304032.12_1_2:237036554-237036818:+|nuORF	ENST00000304032.12_1_2:237036554-237036818:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.3013916015625	2	530.300916	1058.58728	-1.2028	-0.00063785	1.4121	0.00074882	0.20925	0.00011097	530.3018418800393	22.587	0.32009	22.587	22.505	22.825	0					10	7	2	0	0	0	0.49411	1	6792	6792		45.972	3.5761	1	65253			21338	8509	13746	13802	21654	21654					0.06032851571490028
KPVLNSLARS	10	Unmodified	_KPVLNSLARS_					0	0	0			REV__ARFGEF2-SULF2|2|fusion	REV__ARFGEF2-SULF2|2|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.8275756835938	2	542.827298	1083.64004	0.31859	0.00017294	0.19245	0.00010447	0.51103	0.0002774	542.8273446337162	24.485	0.21632	24.485	24.377	24.593	0					9	4	3	0	0	0	0.17315	1	8588	8588		82.75	8.4954	1	531110	+		21339	12195	13747	13803	21655	21655					0.10156809634281672
KPVLSLKTSL	10	Unmodified	_KPVLSLKTSL_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.350830078125	2	543.350074	1084.6856	0.32319	0.00017561	0.98266	0.00053393	1.3058	0.00070953	543.3503985004851	27.446	0.26392	27.446	27.356	27.62	0					12	9	2	0	0	0	0.64646	1	8751	8751		30.318	16.181	1	73779			21340	2723	13748	13804	21656	21656					0.1466403509666634
KPVRKQLE	8	Unmodified	_KPVRKQLE_					0	0	0			REV__ENSG00000162702|ENST00000367353|ZNF281	REV__ENSG00000162702|ENST00000367353|ZNF281	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.3111572265625	2	499.311284	996.608014	0.67521	0.00033714	-1.2876	-0.0006429	-0.61236	-0.00030576	499.31065926272026	24.078	0.36056	24.078	23.875	24.236	0					14	8	2	0	0	0	0.53424	1	8061	8061		55.504	0	1	622780	+		21341	15831	13749	13805	21657	21657					0.10957441951131841
KPYECMECGK	10	Unmodified	_KPYECMECGK_					0	0	0		ENSG00000180479|ENST00000451802|ZNF571;nc|ENSG00000196418|Q15973-2|ZNF124;ZNF124|p.A214Dfs*12|1|0.07|ENSG00000196418|chr1:247156981-247156982|-/T|frameshift_variant;nc|ENSG00000196418|Q15973-4|ZNF124;nc|ENSG00000196418|Q15973-1|ZNF124;ENSG00000196418|ENST00000543802|ZNF124;nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000204524|ENST00000414468|ZNF805	ENSG00000180479|ENST00000451802|ZNF571	ENSG00000180479|ENST00000451802|ZNF571	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.2501831054688	2	594.24832	1186.48209	0.023545	1.3992E-05	3.283	0.0019509	3.3065	0.0019649	594.2504869337796	18.335	0.22082	18.335	18.173	18.394	0					9	4	3	0	0	0	0.58189	1	5624	5624		36.447	4.9169	1	259230			21342	6805	13750	13806	21658	21658					-0.10369517003141482
KPYKKMHK	8	Unmodified	_KPYKKMHK_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3118896484375	2	530.310229	1058.60591	3.4383	0.0018234	-0.2382	-0.00012632	3.2001	0.0016971	530.3100174464208	12.567	0.13864	12.567	12.51	12.649	0					7	3	3	0	0	0	0.57802	1	2715	2715		52.299	2.2746	1	191860	+		21343	16808	13751	13807	21659	21659					0.0789468994166782
KPYLCKMC	8	Unmodified	_KPYLCKMC_					0	0	0		ENSG00000152977|ENST00000282928|ZIC1;ENSG00000043355|ENST00000376335|ZIC2	ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2357177734375	2	493.237027	984.459501	-1.5425	-0.00076081	-1.0899	-0.00053756	-2.6324	-0.0012984	493.2366618137089	11.736	0.09148	11.736	11.662	11.754	0					6	3	2	0	0	0	0.78999	1	2280	2280		13.775	0	1	231940			21344	1206	13752	13808	21660	21660					-0.03335071610092655
KPYLVKMK	8	Oxidation (M)	_KPYLVKM(Oxidation (M))K_		KPYLVKM(1)K		KPYLVKM(58)K	0	0	1			REV__NUP35|p.D312Mfs*26|1|0.48|ENSG00000163002|chr2:183161077-183161077|A/-|frameshift_variant	REV__NUP35|p.D312Mfs*26|1|0.48|ENSG00000163002|chr2:183161077-183161077|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.8090515136719	2	511.806988	1021.59942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.531	1	16.531	16.031	17.031	0								0	0	0	1.7419	1	4741	4741		57.811	11.859	1		+		21345	21315	13753	13809	21661	21661		768			0.08948751990294568
KQADPPVIN	9	Unmodified	_KQADPPVIN_					0	0	0			REV__ENSG00000203995|ENST00000371528|ZYG11A	REV__ENSG00000203995|ENST00000371528|ZYG11A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2727966308594	2	491.271824	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.268	1	21.268	20.768	21.768	0								0	0	0	0.3245	1	5833	5833		30.318	2.0634	1		+		21346	17463	13754	13810	21662	21662					0.038051699261814065
KQAEKLMKQ	9	Unmodified	_KQAEKLMKQ_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1;ATAD1|p.N66Mfs*2|1|0.25|ENSG00000138138|chr10:87792721-87792721|T/-|frameshift_variant;ATAD1|p.G63E|1|0.25|ENSG00000138138|chr10:87792730-87792730|C/T|missense_variant	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3160400390625	2	552.315709	1102.61686	1.8247	0.0010078	-1.716	-0.00094777	0.1087	6.0039E-05	552.3146269553458	28.893	0.21055	28.893	28.807	29.018	0					7	5	2	0	0	0	0.21263	1	10276	10276		60.118	10.677	1	152410			21347	4233	13755	13811	21663	21663					0.06966047525293106
KQAELVTVGV	10	Unmodified	_KQAELVTVGV_					0	0	0			REV__ENST00000325076.9_1_20:34190424-34191756:-|nuORF	REV__ENST00000325076.9_1_20:34190424-34191756:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.31103515625	2	522.308406	1042.60226	0.42399	0.00022146	1.8221	0.00095171	2.2461	0.0011732	522.3097043144487	14.669	0.26788	14.669	14.609	14.877	0					7	5	2	0	0	0	0.52707	1	3787	3787		42.396	3.1433	1	66015	+		21348	18350	13756	13812	21664	21664					0.08266298648823067
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.8275146484375	2	562.826766	1123.63898	1.7843	0.0010042	-0.99575	-0.00056044	0.78854	0.00044381	562.8261881132664	37.072	0.39765	37.072	37.004	37.402	0					18	11	3	0	0	0	0.062676	1	14023	14023		90.777	31.995	1	178370			21349	1475	13757	13813	21665	21665					0.08210595265359188
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.8275756835938	2	562.826766	1123.63898	1.8655	0.00105	-1.1688	-0.00065785	0.6967	0.00039212	562.8261525981208	37.065	0.34151	37.065	36.962	37.304	0					23	10	3	0	0	0	0.13519	1	14467	14467		71.296	7.9894	1	421110			21350	1475	13757	13813	21666	21666					0.08210595265359188
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8271484375	2	562.826766	1123.63898	1.0688	0.00060154	-0.67036	-0.0003773	0.39842	0.00022424	562.8263375491417	37.032	0.25609	37.032	36.931	37.187	0					6	5	2	0	0	0	0.47038	1	14432	14432		35.618	1.6967	1	115550			21351	1475	13757	13813	21667	21667					0.08210595265359188
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8269653320312	2	562.826766	1123.63898	1.7674	0.00099476	-1.1911	-0.00067036	0.57637	0.0003244	562.8259108428309	37.022	0.55402	37.022	36.863	37.417	0					28	11	4	0	0	0	0.0062933	1	14422	14422		152.47	54.998	1	993540			21352	1475	13757	13813	21668	21668					0.08210595265359188
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8267822265625	2	562.826766	1123.63898	3.4706	0.0019534	-2.2481	-0.0012653	1.2226	0.00068808	562.825263656166	37.002	0.55394	37.002	36.846	37.4	0					22	11	4	0	0	0	0.034359	1	14441	14441		104.75	37.253	1	384750			21353	1475	13757	13813	21669	21669					0.08210595265359188
KQALRKEH	8	Unmodified	_KQALRKEH_					0	0	0		ENST00000522293.5_1_5:179225178-179226553:-|nuORF;nc|ENSG00000161013|Q9UQ53-2|MGAT4B;ENSG00000161013|ENST00000292591|MGAT4B;nc|ENSG00000161013|Q9UQ53-3|MGAT4B	ENST00000522293.5_1_5:179225178-179226553:-|nuORF	ENST00000522293.5_1_5:179225178-179226553:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2983703613281	2	505.298707	1008.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.135	1	15.135	14.635	15.635	0								0	0	0	1.7419	1	3924	3924		40.573	3.4135	1				21354	5398	13758	13814	21670	21670					0.07891387148549711
KQAPAAEGSGL	11	Unmodified	_KQAPAAEGSGL_					0	0	0			REV__nc|ENSG00000139890|Q8IYK8-2|REM2	REV__nc|ENSG00000139890|Q8IYK8-2|REM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.7731323242188	2	514.772188	1027.52982	-0.14979	-7.7106E-05	0.55468	0.00028553	0.40489	0.00020843	514.7724297186536	26.842	0.50938	26.842	26.629	27.139	0					50	18	4	0	0	0	0.68382	1	8426	8426		29.17	1.2878	1	2070100	+		21355	15051	13759	13815	21671	21671					0.017159645752371944
KQAPNLQQ	8	Unmodified	_KQAPNLQQ_					0	0	0			REV__ENSG00000221994|ENST00000276054|ZNF630	REV__ENSG00000221994|ENST00000276054|ZNF630	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7564392089844	2	463.756341	925.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.527	1	14.527	14.027	15.027	0								0	0	0	1.7419	1	3091	3091		65.803	7.9919	1		+		21356	17614	13760	13816	21672	21672					0.03240016611948704
KQAVIQGLT	9	Unmodified	_KQAVIQGLT_					0	0	0			REV__ENSG00000178773|ENST00000319518|CPNE7	REV__ENSG00000178773|ENST00000319518|CPNE7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7914733886719	2	479.290017	956.565481	-0.23315	-0.00011174	0.86237	0.00041333	0.62923	0.00030158	479.2904765407481	40.491	0.13773	40.491	40.399	40.537	0					7	5	2	0	0	0	0.41113	1	15432	15432		40.778	0.20554	1	53769	+		21357	16745	13761	13817	21673	21673					0.0854604682289164
KQAWLIKN	8	Unmodified	_KQAWLIKN_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7988586425781	2	500.800552	999.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.864	1	19.864	19.364	20.364	0								0	0	0	1.7419	1	5478	5478		68.485	4.9508	1				21358	1531	13762	13818	21674	21674					0.08674056922416185
KQCQDLKTQ	9	Unmodified	_KQCQDLKTQ_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.2794189453125	2	546.279323	1090.54409	1.8609	0.0010166	-1.1127	-0.00060787	0.7482	0.00040873	546.2785626272341	15.747	0.088816	15.747	15.697	15.786	0					6	2	3	0	0	0	0.10915	1	4140	4140		77.318	3.1526	1	161770	+		21359	14494;21013	13763	13819	21675	21675					0.002442937318846816
KQDRNFKEL	9	Unmodified	_KQDRNFKEL_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.3200073242188	2	589.319837	1176.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.063	1	15.063	14.563	15.563	0								0	0	0	0.23111	1	3306	3306		31.53	0	1		+		21360	13195	13764	13820	21676	21676					0.04387317766304477
KQDSNNKK	8	Unmodified	_KQDSNNKK_					0	0	0		ENSG00000174948|ENST00000389740|GPR149;GPR149|p.I582Nfs*6|1|0.33|ENSG00000174948|chr3:154338150-154338151|-/T|frameshift_variant	ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2567138671875	2	481.256705	960.498858	-0.13412	-6.4546E-05	-0.55231	-0.0002658	-0.68643	-0.00033035	481.25659747202764	11.91	0.097865	11.91	11.877	11.975	0					8	3	3	0	0	0	0.24915	1	2397	2397		102.77	11.997	1	622510			21361	6524	13765	13821	21677	21677					0.017028112609978052
KQDSNNKK	8	Unmodified	_KQDSNNKK_					0	0	0		ENSG00000174948|ENST00000389740|GPR149;GPR149|p.I582Nfs*6|1|0.33|ENSG00000174948|chr3:154338150-154338151|-/T|frameshift_variant	ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.25665283203125	2	481.256705	960.498858	-1.3512	-0.00065025	0.93951	0.00045215	-0.41164	-0.00019811	481.25723577236283	11.73	0.10214	11.73	11.672	11.774	0					9	4	3	0	0	0	0.24915	1	2288	2288		102.77	8.7669	1	315600			21362	6524	13765	13821	21678	21678					0.017028112609978052
KQDSNNKK	8	Unmodified	_KQDSNNKK_					0	0	0		ENSG00000174948|ENST00000389740|GPR149;GPR149|p.I582Nfs*6|1|0.33|ENSG00000174948|chr3:154338150-154338151|-/T|frameshift_variant	ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.25628662109375	2	481.256705	960.498858	0.68466	0.0003295	-1.5542	-0.00074795	-0.86949	-0.00041845	481.25615187540575	12.021	1.3424	12.021	11.954	13.297	0					69	32	5	0	0	0	0.27635	1	2765	2765		90.37	8.1293	1	42988000			21363	6524	13765	13821	21679	21679					0.017028112609978052
KQEELARK	8	Unmodified	_KQEELARK_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2904357910156	2	501.290548	1000.56654	1.1206	0.00056174	-0.82371	-0.00041292	0.29688	0.00014882	501.2905346901857	15.453	1.4553	15.453	15.195	16.65	0					90	29	5	0	0	0	0.29212	1	4249	4249		84.916	13.62	1	136240000			21364	4991	13766	13822	21680	21680					0.06628261191804086
KQEHFLKSL	9	Unmodified	_KQEHFLKSL_					0	0	0		ENSG00000171763|ENST00000305560|SPATA5L1;ENST00000533841.1_1_15:45709932-45713405:+|nuORF	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.3201293945312	2	565.321848	1128.62914	-1.1137	-0.00062959	-1.3655	-0.00077193	-2.4791	-0.0014015	565.3211325052393	13.726	0.099854	13.726	13.663	13.763	0					8	5	2	0	0	0	0.27123	1	2794	2794		30.318	0	1	87943			21365	6317	13767	13823	21681	21681					0.0699740725999618
KQEHIADKL	9	Unmodified	_KQEHIADKL_					0	0	0		BCL11A|p.C121S|1|0.32|ENSG00000119866|chr2:60545995-60545995|A/T|missense_variant;nc|ENSG00000119866|Q9H165-3|BCL11A;BCL11A|p.L265Cfs*15|1|0.34|ENSG00000119866|chr2:60462119-60462119|G/-|frameshift_variant;BCL11A|p.L360Sfs*61|3|0.26|ENSG00000119866|chr2:60461834-60461834|G/-|frameshift_variant;BCL11A|p.S554Vfs*18|1|0.05|ENSG00000119866|chr2:60461252-60461253|-/C|frameshift_variant;nc|ENSG00000119866|Q9H165-2|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	BCL11A|p.C121S|1|0.32|ENSG00000119866|chr2:60545995-60545995|A/T|missense_variant	BCL11A|p.C121S|1|0.32|ENSG00000119866|chr2:60545995-60545995|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.3059692382812	2	541.303655	1080.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.941	1	41.941	41.441	42.441	0								0	0	0	0.18645	1	16710	16710		52.937	10.541	1				21366	288	13768	13824	21682	21682					0.05568530363279933
KQEHSITL	8	Unmodified	_KQEHSITL_					0	0	0			REV__ENST00000596960.1_1:149575518-149575569:+|nuORF	REV__ENST00000596960.1_1:149575518-149575569:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2623596191406	2	478.263999	954.513445	0.652	0.00031183	-4.0053	-0.0019156	-3.3533	-0.0016038	478.2620350126473	13.059	0.18807	13.059	12.971	13.159	0					7	4	3	0	0	0	0.70055	1	3103	3103		33.516	0	1	160500	+		21367	20570	13769	13825	21683	21683					0.03436883409131042
KQEIQFRL	8	Unmodified	_KQEIQFRL_					0	0	0			REV__CSPP1|p.E750Q|1|0.05|ENSG00000104218|chr8:67158468-67158468|G/C|missense_variant	REV__CSPP1|p.E750Q|1|0.05|ENSG00000104218|chr8:67158468-67158468|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.31396484375	2	531.308741	1060.60293	1.7213	0.00091454	4.4327	0.0023551	6.154	0.0032697	531.3131387514427	19.272	0.26581	19.272	19.164	19.43	0					9	5	2	0	0	0	0.35045	1	6075	6075		76.774	2.5191	1	2995400	+		21368	12641	13770	13826	21684	21684					0.07505138088527019
KQEISSLVR	9	Unmodified	_KQEISSLVR_					0	0	0			REV__nc|ENSG00000175793|P31947-2|SFN	REV__nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3119506835938	2	530.31148	1058.60841	0.11617	6.1608E-05	0.8704	0.00046158	0.98658	0.00052319	530.3119431335502	20.381	0.24736	20.381	20.275	20.522	0					10	5	3	0	0	0	0.019882	1	6321	6321		122.18	0	1	2042800	+		21369	16631	13771	13827	21685	21685					0.08144816880326289
KQEKEIQTL	9	Unmodified	_KQEKEIQTL_					0	0	0		ENSG00000176714|ENST00000324364|CCDC121;nc|ENSG00000176714|Q6ZUS5-2|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.8164672851562	2	558.816596	1115.61864	-0.467	-0.00026097	1.0388	0.00058051	0.57181	0.00031954	558.817181569355	20.921	0.11101	20.921	20.854	20.965	0					7	3	3	0	0	0	0.51991	1	5928	5928		30.318	2.2362	1	147470			21370	6619	13772	13828	21686	21686					0.06545379814906482
KQEKEIQTL	9	Unmodified	_KQEKEIQTL_					0	0	0		ENSG00000176714|ENST00000324364|CCDC121;nc|ENSG00000176714|Q6ZUS5-2|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.8170776367188	2	558.816596	1115.61864	1.1115	0.00062112	-0.39553	-0.00022103	0.71595	0.00040009	558.8164071262537	20.984	0.20051	20.984	20.919	21.12	0					7	5	2	0	0	0	0.17854	1	6011	6011		64.207	0	1	618260			21371	6619	13772	13828	21687	21687					0.06545379814906482
KQELLRANM	9	Unmodified	_KQELLRANM_					0	0	0		ENST00000526500.5_1_11:111859671-111889757:+|nuORF;nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENSG00000150764|ENST00000440460|DIXDC1	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8054809570312	2	551.805508	1101.59646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.882	1	26.882	26.382	27.382	0								0	0	0	0.34101	1	9674	9674		14.137	0	1				21372	4935	13773	13829	21688	21688					0.04972876865485887
KQELVEKP	8	Unmodified	_KQELVEKP_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;CACNA1C|p.E1194Gfs*8|1|0.17|ENSG00000151067|chr12:2608669-2608670|-/G|frameshift_variant	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7815246582031	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.909	1	22.909	22.409	23.409	0								0	0	0	1.7419	1	6905	6905		39.253	2.0937	1				21373	346	13774	13830	21689	21689					0.06350340585993308
KQENPNMR	8	Unmodified	_KQENPNMR_					0	0	0		ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.75054931640625	2	508.750733	1015.48691	-0.021722	-1.1051E-05	-0.7863	-0.00040003	-0.80803	-0.00041108	508.75052667349297	12.469	0.2829	12.469	12.347	12.63	0					19	9	4	0	0	0	0.29286	1	2620	2620		63.306	10.37	1	1105800			21374	994	13775	13831	21690	21690					-0.020211287538359102
KQENPNMR	8	Unmodified	_KQENPNMR_					0	0	0		ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.75103759765625	2	508.750733	1015.48691	-0.54238	-0.00027594	0.7137	0.00036309	0.17132	8.7158E-05	508.75132626935135	12.233	0.23161	12.233	12.166	12.398	0					26	14	4	0	0	0	0.49216	1	2400	2400		40.573	4.1259	1	901500			21375	994	13775	13831	21691	21691					-0.020211287538359102
KQEPQLTLLLG	11	Unmodified	_KQEPQLTLLLG_					0	0	0			REV__nc|ENSG00000177628|P04062-4|GBA1	REV__nc|ENSG00000177628|P04062-4|GBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3690795898438	2	620.368995	1238.72344	0.17618	0.0001093	-0.013097	-8.125E-06	0.16308	0.00010117	620.3689560216098	26.109	3.0531	26.109	26	29.053	0					111	62	3	0	0	0	0.72685	1	9676	9676		16.007	16.007	1	1251000	+		21376	16702	13776	13832	21692	21692					0.11362501291455374
KQFENPIIK	9	Unmodified	_KQFENPIIK_					0	0	0		ENSG00000075975|ENST00000170447|MKRN2;nc|ENSG00000075975|Q9H000-2|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8251953125	2	558.824224	1115.63389	1.3754	0.00076858	-0.18997	-0.00010616	1.1854	0.00066242	558.8239774840777	27.957	0.31281	27.957	27.813	28.126	0					13	6	3	0	0	0	0.35096	1	10091	10091		46.457	5.0302	1	154470			21377	1552	13777	13833	21693	21693					0.08070291402736984
KQFHHGKK	8	Unmodified	_KQFHHGKK_					0	0	0			REV__RGSL1|p.C239G|1|0.28|ENSG00000121446|chr1:182473826-182473826|T/G|missense_variant	REV__RGSL1|p.C239G|1|0.28|ENSG00000121446|chr1:182473826-182473826|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2879943847656	2	505.288143	1008.56173	-1.9831	-0.001002	1.1226	0.00056725	-0.8605	-0.0004348	505.2887334198483	14.336	0.62805	14.336	14.249	14.877	0					57	25	5	0	0	0	0.41952	1	2998	2998		68.485	0	1	13226000	+		21378	21461	13778	13834	21694	21694					0.0577942183971345
KQFLDYIKQ	9	Unmodified	_KQFLDYIKQ_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	591.8284912109375	2	591.829506	1181.64446	1.5285	0.00090459	-3.3717	-0.0019955	-1.8432	-0.0010909	591.8272408209541	14.806	0.087644	14.806	14.76	14.847	0					6	4	2	0	0	0	0.12278	1	3114	3114		77.318	22.541	1	79370	+		21379	14971	13779	13835	21695	21695					0.06090274057169154
KQFRIRQN	8	Unmodified	_KQFRIRQN_					0	0	0		ENST00000466202.5_1_7:123152389-123172522:-|nuORF;ENST00000414857.5_2_2:203776999-203782638:+|nuORF	ENST00000466202.5_1_7:123152389-123172522:-|nuORF	ENST00000466202.5_1_7:123152389-123172522:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.3170776367188	2	545.317432	1088.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.907	1	50.907	50.407	51.407	0								0	0	0	1.7419	1	16605	16605		19.36	1.0356	1				21380	9342	13780	13836	21696	21696					0.07954478414194455
KQFYLLIGE	9	Unmodified	_KQFYLLIGE_					0	0	0			REV__ENST00000607540.1_1_2:56612843-56612933:+|nuORF	REV__ENST00000607540.1_1_2:56612843-56612933:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.8133544921875	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.347	1	45.347	44.847	45.847	0								0	0	0	0.22106	1	17552	17552		47.916	3.5384	1		+		21381	20625	13781	13837	21697	21697					0.06167486654203458
KQFYSLLVT	9	Unmodified	_KQFYSLLVT_					0	0	0		MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant;MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant;MON2|p.V1435Afs*17|1|0.03|ENSG00000061987|chr12:62566430-62566431|-/CATCT|frameshift_variant;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;MON2|p.E989Nfs*2|1|0.16|ENSG00000061987|chr12:62552924-62552924|A/-|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.8151245117188	2	549.813325	1097.6121	0.34641	0.00019046	1.9781	0.0010876	2.3245	0.001278	549.814666909049	14.232	0.095325	14.232	14.205	14.3	0					5	3	2	0	0	0	0.070005	1	3045	3045		71.877	32.625	1	156860			21382	1327	13782	13838	21698	21698					0.06719486654196771
KQFYSLLVT	9	Unmodified	_KQFYSLLVT_					0	0	0		MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant;MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant;MON2|p.V1435Afs*17|1|0.03|ENSG00000061987|chr12:62566430-62566431|-/CATCT|frameshift_variant;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;MON2|p.E989Nfs*2|1|0.16|ENSG00000061987|chr12:62552924-62552924|A/-|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8139038085938	2	549.813325	1097.6121	1.7124	0.00094151	-0.79197	-0.00043544	0.92044	0.00050607	549.8130975665268	14.501	0.24653	14.501	14.45	14.697	0					14	5	4	0	0	0	0.047855	1	3784	3784		69.628	5.4204	1	1182100			21383	1327	13782	13838	21699	21699					0.06719486654196771
KQGTSKKCI	9	Unmodified	_KQGTSKKCI_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;ENST00000459786.1_1_2:231368968-231371166:+|nuORF	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.78076171875	2	496.781502	991.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.05	1	33.05	32.55	33.55	0								0	0	0	0.3368	1	12190	12190		27.882	0	1				21384	11433	13783	13839	21700	21700					0.05233802945451771
KQHCYQVAS	9	Unmodified	_KQHCYQVAS_					0	0	0			REV__nc|ENSG00000075413|P27448-8|MARK3	REV__nc|ENSG00000075413|P27448-8|MARK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.253662109375	2	532.253108	1062.49166	0.12339	6.5676E-05	0.27593	0.00014687	0.39933	0.00021254	532.2533375294942	17.299	0.17695	17.299	17.213	17.39	0					7	4	2	0	0	0	0.071197	1	4844	4844		87.754	20.261	1	590330	+		21385	13233	13784	13840	21701	21701					-0.0370824461108441
KQHEQKVE	8	Unmodified	_KQHEQKVE_					0	0	0			REV__nc|ENSG00000103051|Q9H9E3-3|COG4	REV__nc|ENSG00000103051|Q9H9E3-3|COG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2742919921875	2	513.272355	1024.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.476	1	36.476	35.976	36.976	0								0	0	0	1.7419	1	11964	11964		38.806	0.99462	1		+		21386	13661	13785	13841	21702	21702					0.01887384295105221
KQHQYVTK	8	Unmodified	_KQHQYVTK_					0	0	0			REV__CON__P02663	REV__CON__P02663	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2877197265625	2	516.285266	1030.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.246	1	19.246	18.746	19.746	0								0	0	0	1.7419	1	4942	4942		40.778	1.5253	1		+	+	21387	12586	13786	13842	21703	21703					0.04192278537357197
KQHYPCTTW	9	Unmodified	_KQHYPCTTW_					0	0	0		ENST00000548869.1_1_12:110906313-110924532:+|nuORF;ENST00000548449.1_1_12:110906663-110924532:+|nuORF;ENST00000538285.6_1_12:110906680-110924532:+|nuORF;FAM216A|p.K249Rfs*6|1|0.44|ENSG00000204856|chr12:110490055-110490055|A/-|frameshift_variant;ENSG00000204856|ENST00000377673|FAM216A	ENST00000548869.1_1_12:110906313-110924532:+|nuORF	ENST00000548869.1_1_12:110906313-110924532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.26708984375	2	582.268758	1162.52296	-0.32256	-0.00018782	-1.7604	-0.0010251	-2.083	-0.0012129	582.2682244602273	20.613	0.66514	20.613	20.396	21.062	0					25	13	3	0	0	0	0.47038	1	6742	6742		35.618	0.46626	1	189630			21388	7728	13787	13843	21704	21704					-0.05179671577002409
KQIDDLKK	8	Unmodified	_KQIDDLKK_					0	0	0		nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-2|ATXN2	nc|ENSG00000204842|Q99700-5|ATXN2	nc|ENSG00000204842|Q99700-5|ATXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2953186035156	2	494.295299	986.576045	-0.75329	-0.00037235	0.41476	0.00020501	-0.33853	-0.00016733	494.29540475567785	26.602	0.26741	26.602	26.493	26.761	0					17	5	4	0	0	0	0.23895	1	9529	9529		134.81	0	1	2608800			21389	7725	13788	13844	21705	21705					0.08222029477337855
KQIDVKNNLQ	10	Unmodified	_KQIDVKNNLQ_					0	0	0		nc|ENSG00000131115|Q86WZ6-2|ZNF227;ENSG00000131115|ENST00000313040|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	600.3408203125	2	600.340769	1198.66699	0.29707	0.00017834	-0.19385	-0.00011637	0.10322	6.1967E-05	600.3404477224774	22.627	0.10821	22.627	22.585	22.693	0					5	3	2	0	0	0	0.46128	1	6694	6694		49.536	5.8853	1	69726			21390	3700	13789	13845	21706	21706					0.0755987345480662
KQIEARCD	8	Unmodified	_KQIEARCD_					0	0	0			REV__ENST00000562226.5_1_16:981695-984108:-|nuORF	REV__ENST00000562226.5_1_16:981695-984108:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7380676269531	2	481.739834	961.465115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.616	1	15.616	15.116	16.116	0								0	0	0	1.7419	1	4305	4305		37.159	3.6435	1		+		21391	20304	13790	13846	21707	21707					-0.017159335024189204
KQIKTLNNK	9	Unmodified	_KQIKTLNNK_					0	0	0		ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8355102539062	2	543.835123	1085.65569	1.1606	0.00063115	-0.29987	-0.00016308	0.86068	0.00046807	543.8352804427708	16.076	0.10627	16.076	15.996	16.102	0					6	4	2	0	0	0	0.25716	1	3596	3596		54.776	5.3348	1	70905			21392	10716	13791	13847	21708	21708					0.11629096151295926
KQILSRAN	8	Unmodified	_KQILSRAN_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.27978515625	2	465.279983	928.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.586	1	50.586	50.086	51.086	0								0	0	0	1.7419	1	15720	15720		18.324	3.6603	1				21393	4274	13792	13848	21709	21709					0.07828295882939074
KQIRHKPE	8	Unmodified	_KQIRHKPE_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232;KIAA0232|p.S351*|1|0.05|ENSG00000170871|chr4:6861432-6861433|-/TG|frameshift_variant;KIAA0232|p.T785Nfs*3|1|0.28|ENSG00000170871|chr4:6862728-6862729|-/A|frameshift_variant	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.306640625	2	518.306532	1034.59851	1.5761	0.00081689	-1.1633	-0.00060297	0.41273	0.00021392	518.3057999454511	17.524	0.32155	17.524	17.413	17.734	0					11	6	2	0	0	0	0.69548	1	5086	5086		34.173	2.2177	1	1195600			21394	6263	13793	13849	21710	21710					0.08259673665611444
KQITSHVKK	9	Unmodified	_KQITSHVKK_					0	0	0			REV__SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	REV__SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.8307495117188	2	534.82984	1067.64513	-0.58333	-0.00031198	2.9963	0.0016025	2.413	0.0012905	534.8307702021536	17.927	0.33719	17.927	17.763	18.101	0					26	9	4	0	0	0	0.19605	1	4601	4601		62.107	5.3864	1	368380	+		21395	13152	13794	13850	21711	21711					0.11401113496890503
KQITSHVKK	9	Unmodified	_KQITSHVKK_					0	0	0			REV__SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	REV__SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.8301391601562	2	534.82984	1067.64513	1.7931	0.00095898	-0.05548	-2.9673E-05	1.7376	0.00092931	534.8292689131478	18.195	0.62309	18.195	17.887	18.51	0					27	12	3	0	0	0	0.11898	1	5534	5534		75.043	8.0814	1	2041700	+		21396	13152	13794	13850	21712	21712					0.11401113496890503
KQITSHVKK	9	Unmodified	_KQITSHVKK_					0	0	0			REV__SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	REV__SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.8306274414062	2	534.82984	1067.64513	1.0914	0.0005837	0.18455	9.8703E-05	1.2759	0.0006824	534.829811589831	18.009	0.53257	18.009	17.781	18.314	0					24	12	3	0	0	0	0.13267	1	4600	4600		71.877	6.4121	1	669630	+		21397	13152	13794	13850	21713	21713					0.11401113496890503
KQKEQAKAE	9	Unmodified	_KQKEQAKAE_					0	0	0		ENST00000501897.1_1_8:22925813-22938545:+|nuORF	ENST00000501897.1_1_8:22925813-22938545:+|nuORF	ENST00000501897.1_1_8:22925813-22938545:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2938232421875	2	530.293288	1058.57202	3.4375	0.0018229	-2.9346	-0.0015562	0.50288	0.00026668	530.2918905490114	18.872	0.34478	18.872	18.784	19.129	0					20	7	4	0	0	0	0.034359	1	5742	5742		104.75	8.5561	1	1179700			21398	10149	13795	13851	21714	21714					0.04507939983614051
KQKGRQQK	8	Unmodified	_KQKGRQQK_					0	0	0			REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3031311035156	2	500.804157	999.593761	2.9228	0.0014637	-2.4382	-0.001221	0.48459	0.00024268	500.8040372430443	25.674	0.80095	25.674	25.481	26.282	0					37	14	4	0	0	0	0.52345	1	9061	9061		57.811	0	1	4702400	+		21399	17296	13796	13852	21715	21715					0.09394789522843894
KQKKPLVGK	9	Unmodified	_KQKKPLVGK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.34375	2	513.345126	1024.6757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.004	1	13.004	12.504	13.504	0								0	0	0	0.3368	1	2519	2519		27.882	2.3082	1				21400	6489	13797	13853	21716	21716					0.16434891881931435
KQKKPLVGK	9	Unmodified	_KQKKPLVGK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.5655517578125	3	342.565843	1024.6757	0.67701	0.00023192	-0.93042	-0.00031873	-0.25341	-8.6811E-05	342.5655647017379	13.23	0.19972	13.23	13.151	13.351	0					9	5	2	0	0	0	0.22377	1	2960	2960		85.161	32.224	1	563180			21401	6489	13797	13853	21717	21717					0.16434891881931435
KQKKPLVGK	9	Unmodified	_KQKKPLVGK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.345458984375	2	513.345126	1024.6757	-0.2487	-0.00012767	0.065221	3.3481E-05	-0.18348	-9.4186E-05	513.3455455561888	12.963	0.063	12.963	12.938	13.001	0					4	2	2	0	0	0	0.20551	1	2624	2624		60.972	7.6205	1	62246			21402	6489	13797	13853	21718	21718					0.16434891881931435
KQKKPLVGK	9	Unmodified	_KQKKPLVGK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.5657958984375	3	342.565843	1024.6757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.233	1	13.233	12.733	13.733	0								0	0	0	0.19749	1	3174	3174		67.494	38.324	1				21403	6489	13797	13853	21719	21719					0.16434891881931435
KQKKPLVGK	9	Unmodified	_KQKKPLVGK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.5657043457031	3	342.565843	1024.6757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.19	1	13.19	12.69	13.69	0								0	0	0	0.30504	1	3000	3000		49.536	14.384	1				21404	6489	13797	13853	21720	21720					0.16434891881931435
KQKLIDTMAKQ	11	Oxidation (M)	_KQKLIDTM(Oxidation (M))AKQ_		KQKLIDTM(1)AKQ		KQKLIDTM(58)AKQ	0	0	1		EXOC6B|p.V798M|1|0.21|ENSG00000144036|chr2:72179379-72179379|C/T|missense_variant	EXOC6B|p.V798M|1|0.21|ENSG00000144036|chr2:72179379-72179379|C/T|missense_variant	EXOC6B|p.V798M|1|0.21|ENSG00000144036|chr2:72179379-72179379|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.5833740234375	3	440.583234	1318.72787	0.71112	0.00031331	-0.36855	-0.00016238	0.34257	0.00015093	440.5831309014159	23.821	1.7481	23.821	23.716	25.464	0					70	35	4	0	0	0	0.33911	1	8141	8141		58.246	11.019	1	2095200			21405	11122	13798	13854	21721	21721		433			0.08125642442701064
KQKPQCLQT	9	Unmodified	_KQKPQCLQT_					0	0	0			REV__SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant	REV__SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3274536132812	2	537.292233	1072.56991	-0.35681	-0.00019171	0.91997	0.00049429	0.56316	0.00030258	537.2927806354672	18.061	0.59886	18.061	17.792	18.391	0					58	19	5	0	0	0	0.30841	1	4560	4560		42.396	19.354	1	3320200	+		21406	12946	13799	13855	21722	21722					0.03653187974168759
KQKSDIYTI	9	Unmodified	_KQKSDIYTI_					0	0	0			REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant	REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.3050537109375	2	548.305864	1094.59717	0.40095	0.00021984	-2.5156	-0.0013793	-2.1146	-0.0011595	548.3050225494513	16.552	0.10318	16.552	16.509	16.613	0					7	3	3	0	0	0	0.2873	1	4008	4008		51.335	3.6781	1	188120	+		21407	20680	13800	13856	21723	21723					0.05365994786188821
KQKVGEGKQ	9	Unmodified	_KQKVGEGKQ_					0	0	0		nc|ENSG00000145087|Q9Y2K9|STXBP5L;ENSG00000145087|ENST00000471454|STXBP5L	nc|ENSG00000145087|Q9Y2K9|STXBP5L	nc|ENSG00000145087|Q9Y2K9|STXBP5L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.291259765625	2	501.290548	1000.56654	0.67836	0.00034006	-0.048789	-2.4458E-05	0.62957	0.0003156	501.2911070338343	15.537	2.0296	15.537	15.328	17.357	0					116	49	5	0	0	0	0.10506	1	4557	4557		71.877	25.905	1	171490000			21408	4654	13801	13857	21724	21724					0.06628261191815454
KQLEDGRTL	9	Unmodified	_KQLEDGRTL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2941284179688	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.663	1	20.663	20.163	21.163	0								0	0	0	0.015103	1	5571	5571		104.01	13.644	1				21409	7854	13802	13858	21725	21725					0.04507939983614051
KQLEDGRTL	9	Unmodified	_KQLEDGRTL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2937622070312	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.901	1	20.901	20.401	21.401	0								0	0	0	0.040385	1	6847	6847		90.601	2.8466	1				21410	7854	13802	13858	21726	21726					0.04507939983614051
KQLEDGRTL	9	Unmodified	_KQLEDGRTL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2940673828125	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.782	1	20.782	20.282	21.282	0								0	0	0	0.20989	1	5908	5908		49.536	1.8787	1				21411	7854	13802	13858	21727	21727					0.04507939983614051
KQLEDGRTL	9	Unmodified	_KQLEDGRTL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2939453125	2	530.293288	1058.57202	1.2057	0.00063935	0.055066	2.9201E-05	1.2607	0.00066855	530.2932211339331	20.756	0.29348	20.756	20.599	20.893	0					10	6	2	0	0	0	0.085655	1	5900	5900		82.75	0	1	197000			21412	7854	13802	13858	21728	21728					0.04507939983614051
KQLEDGRTL	9	Unmodified	_KQLEDGRTL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2936401367188	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.908	1	20.908	20.408	21.408	0								0	0	0	0.029433	1	6719	6719		96.034	5.4327	1				21413	7854	13802	13858	21729	21729					0.04507939983614051
KQLELEKQ	8	Unmodified	_KQLELEKQ_					0	0	0		nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.29241943359375	2	508.292756	1014.57096	-0.38972	-0.00019809	0.013842	7.0357E-06	-0.37587	-0.00019105	508.29264884319133	16.555	0.21648	16.555	16.396	16.613	0					10	4	3	0	0	0	0.32597	1	4763	4763		79.713	2.395	1	249240			21414	2088	13803	13859	21730	21730					0.06425725614712974
KQLFRGVVK	9	Unmodified	_KQLFRGVVK_					0	0	0			REV__tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	REV__tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.84326171875	2	537.842751	1073.67095	0.69512	0.00037386	0.28403	0.00015276	0.97914	0.00052663	537.842873837877	22.847	0.26796	22.847	22.739	23.007	0					14	5	3	0	0	0	0.14603	1	7670	7670		68.787	15.85	1	606310	+		21415	21727	13804	13860	21731	21731					0.13706007739165216
KQLIEEKI	8	Unmodified	_KQLIEEKI_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;KHSRP|p.Q699Sfs*24|1|0.35|ENSG00000088247|chr19:6415173-6415173|G/-|frameshift_variant;KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant;ENSG00000088247|ENST00000600480|KHSRP;KHSRP|p.A487T|1|0.24|ENSG00000088247|chr19:6416519-6416519|C/T|missense_variant	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.805908203125	2	500.8055	999.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.374	1	25.374	24.874	25.874	0								0	0	0	1.7419	1	7629	7629		66.429	4.3219	1				21416	1774	13805	13861	21732	21732					0.09663200137140393
KQLNCVAVA	9	Carbamidomethyl (C)	_KQLNC(Carbamidomethyl (C))VAVA_	KQLNC(1)VAVA		KQLNC(48)VAVA		0	1	0			REV__nc|ENSG00000185621|Q96KR4-2|LMLN	REV__nc|ENSG00000185621|Q96KR4-2|LMLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.27447509765625	2	501.773677	1001.5328	-0.93543	-0.00046937	3.6054	0.0018091	2.6699	0.0013397	502.27609182583615	16.784	0.15741	16.784	16.699	16.856	0					13	6	3	0	0	0	0.32741	1	4078	4078		47.916	7.343	1	281290	+		21417	17038	13806	13862	21733	21733	604				0.03209516428398729
KQLNEIQQ	8	Unmodified	_KQLNEIQQ_					0	0	0			REV__CEP128|p.R543Q|1|0.42|ENSG00000100629|chr14:80785478-80785478|C/T|missense_variant	REV__CEP128|p.R543Q|1|0.42|ENSG00000100629|chr14:80785478-80785478|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7772521972656	2	500.774731	999.534909	-0.59776	-0.00029934	2.2337	0.0011186	1.6359	0.00081924	500.7756750109098	15.756	0.26805	15.756	15.55	15.818	0					13	5	3	0	0	0	0.39125	1	4340	4340		71.877	5.4482	1	598700	+		21418	12424	13807	13863	21734	21734					0.03512268437862076
KQLNVAVL	8	Unmodified	_KQLNVAVL_					0	0	0			REV__ENST00000407472.5_1_22:19839540-19839579:-|nuORF	REV__ENST00000407472.5_1_22:19839540-19839579:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7820129394531	2	442.781828	883.549102	-0.34392	-0.00015228	-0.41885	-0.00018546	-0.76276	-0.00033774	442.78158311700724	43.265	0.17191	43.265	43.181	43.353	0					15	10	2	0	0	0	0.6282	1	16339	16339		44.531	7.372	1	90157	+		21419	18980	13808	13864	21735	21735					0.10266965656785487
KQLPMKEMI	9	Oxidation (M)	_KQLPM(Oxidation (M))KEMI_		KQLPM(1)KEMI		KQLPM(34)KEM(-34)I	0	0	1			REV__SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant	REV__SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.8118286132812	2	567.306495	1132.59844	1.9396	0.0011003	2.3008	0.0013052	4.2403	0.0024056	567.8105196609257	41.351	0.12036	41.351	41.296	41.416	0					7	5	2	0	0	0	0.30951	1	16260	16260		49.442	20.271	2	91963	+		21420	15492	13809	13865	21736	21736		596			0.03744169559081456
KQLQLSYV	8	Unmodified	_KQLQLSYV_					0	0	0		nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.78436279296875	2	489.784567	977.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.443	1	22.443	21.943	22.943	0								0	0	0	1.7419	1	7466	7466		63.306	0	1				21421	1788	13810	13866	21737	21737					0.06490644448604144
KQLVEPLQL	9	Unmodified	_KQLVEPLQL_					0	0	0		ENST00000311127.8_1_3:124688512-124688782:-|nuORF	ENST00000311127.8_1_3:124688512-124688782:-|nuORF	ENST00000311127.8_1_3:124688512-124688782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.3271484375	2	534.326599	1066.63865	2.2709	0.0012134	-1.1313	-0.0006045	1.1396	0.0006089	534.3256420178362	28.785	0.21441	28.785	28.643	28.857	0					8	5	2	0	0	0	0.20551	1	10218	10218		60.972	2.19	1	146450			21422	8554	13811	13867	21738	21738					0.10799175545503203
KQLVHIQPF	9	Unmodified	_KQLVHIQPF_					0	0	0		EPC1|p.I101V|1|0.17|ENSG00000120616|chr10:32305784-32305784|T/C|missense_variant	EPC1|p.I101V|1|0.17|ENSG00000120616|chr10:32305784-32305784|T/C|missense_variant	EPC1|p.I101V|1|0.17|ENSG00000120616|chr10:32305784-32305784|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.3277587890625	2	555.326934	1108.63931	1.8211	0.0010113	-0.44517	-0.00024722	1.376	0.00076411	555.3267113774632	42.05	0.18832	42.05	41.918	42.106	0					9	5	2	0	0	0	0.35045	1	16745	16745		45.952	4.5253	1	84089			21423	11107	13812	13868	21739	21739					0.08934014985220529
KQMIKEGSI	9	Oxidation (M)	_KQM(Oxidation (M))IKEGSI_		KQM(1)IKEGSI		KQM(49)IKEGSI	0	0	1		tr|U7T622|U7T622_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00347PE=4SV=1	tr|U7T622|U7T622_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00347PE=4SV=1	tr|U7T622|U7T622_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00347PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.78662109375	2	525.286617	1048.55868	3.449	0.0018117	-4.1223	-0.0021654	-0.67324	-0.00035364	525.2862691874632	40.566	1.3252	40.566	39.987	41.313	0					55	28	5	0	0	0	0.30951	1	16084	16084		49.442	10.189	1	1860500			21424	23023	13813	13869	21740	21740		829			0.03634365880020596
KQMKCNKK	8	Carbamidomethyl (C)	_KQMKC(Carbamidomethyl (C))NKK_	KQMKC(1)NKK		KQMKC(58)NKK		0	1	0			REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7874145507812	2	532.788804	1063.56305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.383	1	22.383	21.883	22.883	0								0	0	0	1.7419	1	6320	6320		57.811	23.639	1		+		21425	12535	13814	13870	21741	21741	496				0.033815518219398655
KQMKCNKK	8	Carbamidomethyl (C)	_KQMKC(Carbamidomethyl (C))NKK_	KQMKC(1)NKK		KQMKC(68)NKK		0	1	0			REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7874755859375	2	532.788804	1063.56305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.518	1	22.518	22.018	23.018	0								0	0	0	1.7419	1	6721	6721		68.485	11.764	1		+		21426	12535	13814	13870	21742	21742	496				0.033815518219398655
KQMKCNKKQ	9	Carbamidomethyl (C),Oxidation (M)	_KQM(Oxidation (M))KC(Carbamidomethyl (C))NKKQ_	KQMKC(1)NKKQ	KQM(1)KCNKKQ	KQMKC(88)NKKQ	KQM(88)KCNKKQ	0	1	1			REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.8175048828125	2	604.81555	1207.61655	-0.4446	-0.0002689	4.0927	0.0024754	3.6481	0.0022065	604.8178754783434	13.583	0.11341	13.583	13.511	13.624	0					7	3	3	0	0	0	0.071197	1	3130	3130		87.754	18.908	1	192880	+		21427	12535	13815	13871	21743	21743	496	482			0.021043045338046795
KQMKLEAAGGP	11	Unmodified	_KQMKLEAAGGP_					0	0	0		nc|ENSG00000170854|Q8IUF8-2|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.30419921875	2	565.305341	1128.59613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.635	1	19.635	19.135	20.135	0								0	0	0	0.31916	1	5370	5370		65.465	24.687	1				21428	6262	13816	13872	21744	21744					0.03697457145631233
KQNEKEKK	8	Unmodified	_KQNEKEKK_					0	0	0			REV__ROCK1|p.R1035Q|1|0.21|ENSG00000067900|chr18:20967840-20967840|C/T|missense_variant	REV__ROCK1|p.R1035Q|1|0.21|ENSG00000067900|chr18:20967840-20967840|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2981567382812	2	516.29583	1030.57711	3.2784	0.0016926	1.2488	0.00064476	4.5272	0.0023374	516.2964834963589	31.795	0.41762	31.795	31.633	32.051	0					15	8	2	0	0	0	0.35045	1	11912	11912		76.774	10.345	1	907580	+		21429	21472	13817	13873	21745	21745					0.06304243846238933
KQNEKVAQ	8	Unmodified	_KQNEKVAQ_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7617492675781	2	472.761623	943.508694	-0.52777	-0.00024951	-0.0013026	-6.1582E-07	-0.52907	-0.00025013	472.76191963697073	16.109	0.096647	16.109	16.069	16.166	0					6	3	2	0	0	0	0.41	1	3749	3749		69.628	3.1983	1	82166	+		21430	14626	13818	13874	21746	21746					0.034679992663768644
KQNETTAMK	9	Unmodified	_KQNETTAMK_					0	0	0		ENST00000509112.1_1_17:46928975-46930413:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2	ENST00000509112.1_1_17:46928975-46930413:+|nuORF	ENST00000509112.1_1_17:46928975-46930413:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.766845703125	2	525.766049	1049.51754	0.97849	0.00051446	-0.23974	-0.00012605	0.73875	0.00038841	525.7660707226582	13.662	0.11304	13.662	13.608	13.721	0					4	2	2	0	0	0	0.10506	1	3386	3386		78.264	12.461	1	117390			21431	4078	13819	13875	21747	21747					-0.005233951594846076
KQNETTAMK	9	Unmodified	_KQNETTAMK_					0	0	0		ENST00000509112.1_1_17:46928975-46930413:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2	ENST00000509112.1_1_17:46928975-46930413:+|nuORF	ENST00000509112.1_1_17:46928975-46930413:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7664184570312	2	525.766049	1049.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.654	1	13.654	13.154	14.154	0								0	0	0	0.23445	1	3220	3220		45.972	6.7194	1				21432	4078	13819	13875	21748	21748					-0.005233951594846076
KQNLVIMGK	9	Unmodified	_KQNLVIMGK_					0	0	0		ENSG00000228716|ENST00000439211|DHFR;ENST00000513314.1_1_5:79945206-79949851:-|nuORF	ENSG00000228716|ENST00000439211|DHFR	ENSG00000228716|ENST00000439211|DHFR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8072509765625	2	515.807519	1029.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.862	1	24.862	24.362	25.362	0								0	0	0	0.11184	1	8425	8425		68.787	0	1				21433	7886	13820	13876	21749	21749					0.08686966359186954
KQNSQMIVK	9	Unmodified	_KQNSQMIVK_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2997436523438	2	538.300059	1074.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.79	1	17.79	17.29	18.29	0								0	0	0	0.14179	1	5346	5346		63.534	1.4264	1				21434	7377	13821	13877	21750	21750					0.05125474491228488
KQPGLETNILK	11	Unmodified	_KQPGLETNILK_					0	0	0		ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	620.86669921875	2	620.86662	1239.71869	-0.29774	-0.00018485	0.50086	0.00031097	0.20313	0.00012611	620.8668784150589	27.423	0.26208	27.423	27.293	27.556	0					18	6	3	0	0	0	0.42842	1	9572	9572		47.96	5.6214	1	538760			21435	10158	13822	13878	21751	21751					0.10841617148707883
KQPGLETNILK	11	Unmodified	_KQPGLETNILK_					0	0	0		ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	620.8663940429688	2	620.86662	1239.71869	0.68826	0.00042732	-0.59549	-0.00036972	0.092771	5.7598E-05	620.866204860395	27.399	0.373	27.399	27.187	27.56	0					22	7	4	0	0	0	0.21827	1	9793	9793		72.879	0	1	1200700			21436	10158	13822	13878	21752	21752					0.10841617148707883
KQPKSSLR	8	Unmodified	_KQPKSSLR_					0	0	0		PSIP1|p.K229Sfs*36|1|0.45|ENSG00000164985|chr9:15474181-15474181|T/-|frameshift_variant	PSIP1|p.K229Sfs*36|1|0.45|ENSG00000164985|chr9:15474181-15474181|T/-|frameshift_variant	PSIP1|p.K229Sfs*36|1|0.45|ENSG00000164985|chr9:15474181-15474181|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.23370361328125	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.102	1	13.102	12.602	13.602	0								0	0	0	1.7419	1	3110	3110		40.778	5.1599	1				21437	11982	13823	13879	21753	21753					0.0874858239999412
KQPPALGP	8	Unmodified	_KQPPALGP_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	404.2396240234375	2	404.239796	806.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.002	1	20.002	19.502	20.502	0								0	0	0	1.7419	1	5543	5543		28.254	0	1		+		21438	16796	13824	13880	21754	21754					0.05406434559893114
KQPYAQHQ	8	Unmodified	_KQPYAQHQ_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.254638671875	2	500.253966	998.493378	2.92	0.0014607	-1.489	-0.00074487	1.431	0.00071587	500.252932826163	13.043	0.24042	13.043	12.855	13.095	0					7	5	2	0	0	0	0.44433	1	2936	2936		65.803	7.0212	1	659280			21439	7919	13825	13881	21755	21755					-0.005928675308155107
KQQAALSAL	9	Unmodified	_KQQAALSAL_					0	0	0		ADAD2|p.L200*|1|0.19|ENSG00000140955|chr16:84194966-84194966|C/-|frameshift_variant;ADAD2|p.T355Pfs*22|1|0.26|ENSG00000140955|chr16:84195819-84195819|C/-|frameshift_variant;ENSG00000140955|ENST00000315906|ADAD2;nc|ENSG00000140955|Q8NCV1-2|ADAD2	ADAD2|p.L200*|1|0.19|ENSG00000140955|chr16:84194966-84194966|C/-|frameshift_variant	ADAD2|p.L200*|1|0.19|ENSG00000140955|chr16:84194966-84194966|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2729187011719	2	465.274367	928.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.704	1	11.704	11.204	12.204	0								0	0	0	0.36266	1	2277	2277		21.96	0	1				21440	46	13826	13882	21756	21756					0.06705473788792915
KQQDVRFH	8	Unmodified	_KQQDVRFH_					0	0	0		CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant;CDCA7L|p.L231Yfs*24|1|0.06|ENSG00000164649|chr7:21906629-21906630|-/CTGATAT|frameshift_variant;nc|ENSG00000164649|Q96GN5-4|CDCA7L;CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant;ENSG00000164649|ENST00000406877|CDCA7L	CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant	CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2824096679688	2	529.280515	1056.54648	3.4521	0.0018271	-0.19823	-0.00010492	3.2539	0.0017222	529.2805324305472	16.845	0.30822	16.845	16.714	17.022	0					14	6	3	0	0	0	0.54629	1	4747	4747		55.504	2.1528	1	1261300			21441	442	13827	13883	21757	21757					0.020465102518755884
KQQGPILTK	9	Unmodified	_KQQGPILTK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.8113098144531	2	506.811116	1011.60768	0.85168	0.00043164	-0.85088	-0.00043123	0.00079826	4.0457E-07	506.81078942034276	18.476	0.14552	18.476	18.385	18.53	0					6	3	2	0	0	0	0.034688	1	5426	5426		98.582	16.341	1	261150			21442	3594	13828	13884	21758	21758					0.1023402223128187
KQQGPILTK	9	Unmodified	_KQQGPILTK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.8111572265625	2	506.811116	1011.60768	0.15125	7.6655E-05	-0.0094269	-4.7776E-06	0.14182	7.1877E-05	506.8109513571645	18.419	0.11544	18.419	18.361	18.476	0					4	2	2	0	0	0	0.013298	1	5661	5661		141.52	39.92	1	222760			21443	3594	13828	13884	21759	21759					0.1023402223128187
KQQGPILTK	9	Unmodified	_KQQGPILTK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.8105773925781	2	506.811116	1011.60768	-0.21293	-0.00010791	0.35846	0.00018167	0.14553	7.3756E-05	506.8111911538344	18.43	0.11673	18.43	18.321	18.438	0					4	2	2	0	0	0	0.0034376	1	5506	5506		150.36	54.171	1	157690			21444	3594	13828	13884	21760	21760					0.1023402223128187
KQQKASPK	8	Unmodified	_KQQKASPK_					0	0	0			REV__nc|ENSG00000163374|Q9H869-5|YY1AP1	REV__nc|ENSG00000163374|Q9H869-5|YY1AP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7744140625	2	457.774534	913.534515	-0.63493	-0.00029066	0.13476	6.1691E-05	-0.50017	-0.00022897	457.774582177257	15.531	0.25783	15.531	15.439	15.697	0					20	6	4	0	0	0	0.2498	1	4038	4038		101.6	11.231	1	1797800	+		21445	15877	13829	13885	21761	21761					0.07428893508665624
KQQQQRIE	8	Unmodified	_KQQQQRIE_					0	0	0			REV__STX8|p.K196Nfs*9|1|0.36|ENSG00000170310|chr17:9378607-9378607|T/-|frameshift_variant	REV__STX8|p.K196Nfs*9|1|0.36|ENSG00000170310|chr17:9378607-9378607|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.291259765625	2	529.291079	1056.56761	0.28611	0.00015143	-1.1886	-0.00062909	-0.90245	-0.00047766	529.2907968973109	15.408	0.25274	15.408	15.164	15.417	0					8	5	2	0	0	0	0.74117	1	4177	4177		28.254	0	1	274140	+		21446	16360	13830	13886	21762	21762					0.04158475560689112
KQQRGKQK	8	Unmodified	_KQQRGKQK_					0	0	0		nc|ENSG00000196950|Q9ULF5-2|SLC39A10;ENST00000430412.5_1_2:196521853-196599762:+|nuORF;ENSG00000196950|ENST00000359634|SLC39A10;ENST00000465851.1_1_2:196545249-196581758:+|nuORF	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.3031005859375	2	500.804157	999.593761	-0.58925	-0.0002951	0.50115	0.00025098	-0.088097	-4.4119E-05	500.80565787955277	25.783	0.49767	25.783	25.569	26.067	0					22	8	4	0	0	0	0.41952	1	9198	9198		68.485	0	1	2168100			21447	7407	13831	13887	21763	21763					0.09394789522855262
KQQRQRKK	8	Unmodified	_KQQRQRKK_					0	0	0			REV__ENST00000468115.1_1_7:1523234-1533501:-|nuORF	REV__ENST00000468115.1_1_7:1523234-1533501:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3460083007812	2	550.343981	1098.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.368	1	13.368	12.868	13.868	0								0	0	0	1.7419	1	3085	3085		8.2313	0	1		+		21448	16008	13832	13888	21764	21764					0.1280185619684744
KQQTIPLK	8	Unmodified	_KQQTIPLK_					0	0	0		ENSG00000152240|ENST00000282058|HAUS1;nc|ENSG00000152240|Q96CS2-2|HAUS1;ENST00000439908.1_1_X:18884431-18884560:+|nuORF	ENSG00000152240|ENST00000282058|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.3001403808594	2	478.300384	954.586216	-0.28015	-0.00013399	-0.10714	-5.1244E-05	-0.38728	-0.00018524	478.3003338269139	12.111	0.21778	12.111	12.053	12.271	0					26	7	5	0	0	0	0.29286	1	2470	2470		84.916	2.6105	1	2533700			21449	5004	13833	13889	21765	21765					0.10710637202566886
KQQTIPLK	8	Unmodified	_KQQTIPLK_					0	0	0		ENSG00000152240|ENST00000282058|HAUS1;nc|ENSG00000152240|Q96CS2-2|HAUS1;ENST00000439908.1_1_X:18884431-18884560:+|nuORF	ENSG00000152240|ENST00000282058|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.3001403808594	2	478.300384	954.586216	0.65268	0.00031218	-0.93593	-0.00044766	-0.28325	-0.00013548	478.2997461985555	12.184	0.1816	12.184	12.057	12.238	0					8	4	3	0	0	0	0.39125	1	2673	2673		71.877	13.096	1	429590			21450	5004	13833	13889	21766	21766					0.10710637202566886
KQQVYRDTT	9	Unmodified	_KQQVYRDTT_					0	0	0			REV__ENST00000472767.5_1_2:42922919-42924972:+|nuORF	REV__ENST00000472767.5_1_2:42922919-42924972:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.7965087890625	2	569.796195	1137.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.897	1	15.897	15.397	16.397	0								0	0	0	0.022698	1	4438	4438		99.375	0	1		+		21451	13068	13834	13890	21767	21767					0.01455038495282679
KQRERASE	8	Unmodified	_KQRERASE_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1	REV__nc|ENSG00000171100|Q13496-2|MTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2669982910156	2	502.267604	1002.52066	-0.53955	-0.000271	-0.66756	-0.0003353	-1.2071	-0.00060629	502.267144773048	22.261	0.21344	22.261	22.136	22.35	0					7	4	2	0	0	0	0.72381	1	7514	7514		30.504	2.2494	1	169840	+		21452	16399	13835	13891	21768	21768					0.01949616009574129
KQRPQNPASV	10	Unmodified	_KQRPQNPASV_					0	0	0			REV__ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant	REV__ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.8119506835938	2	562.812179	1123.60981	0.44815	0.00025223	-0.77432	-0.0004358	-0.32617	-0.00018357	562.8118355239272	14.938	0.3502	14.938	14.851	15.201	0					16	8	4	0	0	0	0.30737	1	3754	3754		66.429	11.653	1	1536300	+		21453	12249	13836	13892	21769	21769					0.05294450969063291
KQSAPVSSK	9	Unmodified	_KQSAPVSSK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.26458740234375	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.297	1	12.297	11.797	12.797	0								0	0	0	0.25045	1	2558	2558		43.651	7.204	1				21454	5546	13837	13893	21770	21770					0.04540883409151775
KQSAPVSSK	9	Unmodified	_KQSAPVSSK_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.26483154296875	2	466.263999	930.513445	-0.13503	-6.2958E-05	0.67848	0.00031635	0.54345	0.00025339	466.26452436140175	12.346	0.094062	12.346	12.276	12.37	0					4	2	2	0	0	0	0.22823	1	2753	2753		58.246	10.589	1	44463			21455	5546	13837	13893	21771	21771					0.04540883409151775
KQSFAKGCQI	10	Unmodified	_KQSFAKGCQI_					0	0	0			REV__ENSG00000198040|ENST00000539354|ZNF84	REV__ENSG00000198040|ENST00000539354|ZNF84	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7939453125	2	555.292233	1108.56991	1.8133	0.0010069	-0.061907	-3.4376E-05	1.7514	0.00097253	555.2921644170882	28.169	0.5398	28.169	27.879	28.419	0					30	13	4	0	0	0	0.50881	1	9917	9917		44.377	1.5129	1	726040	+		21456	17378	13838	13894	21772	21772					0.019971879741660814
KQSLTLAK	8	Unmodified	_KQSLTLAK_					0	0	0			REV__nc|ENSG00000171056|Q9BT81-2|SOX7	REV__nc|ENSG00000171056|Q9BT81-2|SOX7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7789001464844	2	444.779285	887.544017	-0.044664	-1.9866E-05	-0.57866	-0.00025738	-0.62333	-0.00027724	444.77903811309557	18.361	0.14601	18.361	18.27	18.416	0					9	3	4	0	0	0	0.25376	1	5366	5366		138.83	7.7941	1	1234800	+		21457	21118	13839	13895	21773	21773					0.09574661794192707
KQSMAGAGP	9	Unmodified	_KQSMAGAGP_					0	0	0		ENST00000522841.6_1_16:21495824-21531728:-|nuORF	ENST00000522841.6_1_16:21495824-21531728:-|nuORF	ENST00000522841.6_1_16:21495824-21531728:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.7102355957031	2	423.710545	845.406537	-0.26371	-0.00011174	-0.46075	-0.00019522	-0.72446	-0.00030696	423.710414268902	15.436	0.16109	15.436	15.339	15.5	0					5	3	2	0	0	0	0.25109	1	4236	4236		55.504	6.0627	1	67516			21458	10332	13840	13896	21774	21774					-0.0223499007687451
KQSRRRIE	8	Unmodified	_KQSRRRIE_					0	0	0			REV__TBC1D4|p.F159Sfs*16|1|0.14|ENSG00000136111|chr13:75481292-75481292|A/-|frameshift_variant	REV__TBC1D4|p.F159Sfs*16|1|0.14|ENSG00000136111|chr13:75481292-75481292|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8187866210938	2	536.820338	1071.62612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.338	1	15.338	14.838	15.838	0								0	0	0	1.7419	1	3419	3419		42.396	5.237	1		+		21459	14848	13841	13897	21775	21775					0.09317576925832327
KQSSEVKVV	9	Unmodified	_KQSSEVKVV_					0	0	0			REV__ENST00000025301.3_1_13:42876393-42876444:+|nuORF	REV__ENST00000025301.3_1_13:42876393-42876444:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2926330566406	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.159	1	21.159	20.659	21.659	0								0	0	0	0.22075	1	6972	6972		49.442	21.36	1		+		21460	17858	13842	13898	21776	21776					0.06977725614729025
KQSYPGGEAP	10	Unmodified	_KQSYPGGEAP_					0	0	0			REV__ENST00000460006.5_1_20:5174924-5175254:+|nuORF	REV__ENST00000460006.5_1_20:5174924-5175254:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2781372070312	2	517.251089	1032.48762	-0.45387	-0.00023477	-3.7929	-0.0019619	-4.2468	-0.0021966	517.7515016365016	11.197	0.13065	11.197	11.116	11.247	0					10	4	3	0	0	0	0.50881	1	2215	2215		44.377	0	1	186610	+		21461	19361	13843	13899	21777	21777					-0.0273201083314234
KQTEATMTFK	10	Unmodified	_KQTEATMTFK_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.M1189*|1|0.34|ENSG00000084674|chr2:21015204-21015204|T/-|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.8014526367188	2	592.802631	1183.59071	-0.53957	-0.00031986	-1.4415	-0.00085452	-1.9811	-0.0011744	592.8016100492475	35.909	0.29699	35.909	35.837	36.134	0					17	13	2	0	0	0	0.57211	1	12163	12163		37.508	8.3381	1	138660			21462	187;186	13844	13900	21778	21778					0.00625733563151698
KQTEGKKEQ	9	Unmodified	_KQTEGKKEQ_					0	0	0			REV__PIK3CA|p.D725G|1|0.53|ENSG00000121879|chr3:179221144-179221144|A/G|missense_variant	REV__PIK3CA|p.D725G|1|0.53|ENSG00000121879|chr3:179221144-179221144|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2930908203125	2	538.290745	1074.56694	2.0472	0.001102	1.2844	0.00069138	3.3316	0.0017934	538.2914517884701	37.02	0.51664	37.02	36.751	37.268	0					21	14	2	0	0	0	0.30841	1	13995	13995		49.536	0.93449	1	69729	+		21463	21372	13845	13901	21779	21779					0.03263636120982483
KQTENNYLE	9	Unmodified	_KQTENNYLE_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;LRBA-SH3D19|2|fusion;LRBA-SH3D19|3|fusion	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.7720947265625	2	569.772385	1137.53022	0.14738	8.397E-05	-0.35167	-0.00020037	-0.20429	-0.0001164	569.7721128809554	28.165	0.24813	28.165	28.071	28.319	0					7	5	2	0	0	0	0.59223	1	10276	10276		22.58	0.61977	1	210640			21464	2585	13846	13902	21780	21780					-0.03304660495564349
KQTGDLLTQQK	11	Unmodified	_KQTGDLLTQQK_					0	0	0			REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	630.3509521484375	2	630.351334	1258.68811	0.84973	0.00053563	-1.1325	-0.00071386	-0.28275	-0.00017823	630.3505418025503	16.26	0.088932	16.26	16.206	16.295	0					5	3	2	0	0	0	0.33911	1	3860	3860		58.246	8.7102	1	143130	+		21465	12347	13847	13903	21781	21781					0.06911838763653577
KQTKSAINT	9	Unmodified	_KQTKSAINT_					0	0	0			REV__nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	REV__nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7823181152344	2	495.782556	989.550559	-0.67103	-0.00033269	0.21626	0.00010722	-0.45477	-0.00022547	495.78263570434564	20.751	0.16877	20.751	20.642	20.811	0					10	3	4	0	0	0	0.15163	1	6652	6652		67.494	2.0283	1	1183800	+		21466	13804	13848	13904	21782	21782					0.055365549549037496
KQTKTNEQ	8	Unmodified	_KQTKTNEQ_					0	0	0			REV__nc|ENSG00000114487|Q86VD1-2|MORC1	REV__nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7561950683594	2	488.756538	975.498523	0.78745	0.00038487	-1.4123	-0.00069027	-0.62485	-0.0003054	488.75578912775615	13.473	0.10043	13.473	13.424	13.524	0					4	2	2	0	0	0	0.35045	1	3147	3147		76.774	0	1	479330	+		21467	20982	13849	13905	21783	21783					0.009793915411478338
KQTQGKQI	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KQTQGKQI_					1	0	0			REV__ENSG00000151229|ENST00000280871|SLC2A13	REV__ENSG00000151229|ENST00000280871|SLC2A13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7768859863281	2	486.777274	971.539994	-0.30976	-0.00015079	-0.95287	-0.00046383	-1.2626	-0.00061462	486.77715088554186	32.095	0.25748	32.095	32.005	32.262	0					9	6	2	0	0	0	0.5535	1	11739	11739		54.776	8.3195	1	642370	+		21468	15468	13850	13906	21784	21784					0.05308572300475589
KQTRDLNSAAI	11	Unmodified	_KQTRDLNSAAI_					0	0	0			REV__ENST00000482270.5_1_22:31668491-31671520:+|nuORF	REV__ENST00000482270.5_1_22:31668491-31671520:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	608.8358154296875	2	608.835851	1215.65715	-0.61885	-0.00037678	0.47208	0.00028742	-0.14677	-8.9356E-05	608.8364534200653	29.514	0.11142	29.514	29.486	29.597	0					6	4	2	0	0	0	0.72685	1	9623	9623		11.097	6.191	1	70687	+		21469	19610	13851	13907	21785	21785					0.05794685449427561
KQTVISENYL	10	Unmodified	_KQTVISENYL_					0	0	0		DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;DOCK2|p.M1388Gfs*7|1|0.05|ENSG00000134516|chr5:170050344-170050345|-/AGGATGCTCATTAGAGATTT|frameshift_variant;ENSG00000134516|ENST00000520908|DOCK2	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.821533203125	2	597.821878	1193.6292	-1.8414	-0.0011008	1.5368	0.00091873	-0.30456	-0.00018208	597.8226444501263	18.144	0.15072	18.144	18.084	18.235	0					5	3	2	0	0	0	0.71484	1	4710	4710		19.997	0.89325	1	157310			21470	836	13852	13908	21786	21786					0.040133624693453385
KQVAKRLID	9	Unmodified	_KQVAKRLID_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.8388061523438	2	535.837665	1069.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.749	1	26.749	26.249	27.249	0								0	0	0	0.17378	1	8658	8658		54.776	0.053964	1		+		21471	13166	13853	13909	21787	21787					0.1287340001395023
KQVCEIIE	8	Unmodified	_KQVCEIIE_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.75762939453125	2	481.254785	960.495018	0.68466	0.0003295	2.4352	0.001172	3.1199	0.0015015	481.25615187540575	12.021	1.3424	12.021	11.954	13.297	0					69	32	5	0	0	0	0.54629	1	2864	2864		55.504	7.5886	1	42988000			21472	6061	13854	13910	21788	21788					0.013190054429287557
KQVCFDIYLLI	11	Unmodified	_KQVCFDIYLLI_					0	0	0		ENST00000370982.3_1_1:68168948-68169056:-|nuORF	ENST00000370982.3_1_1:68168948-68169056:-|nuORF	ENST00000370982.3_1_1:68168948-68169056:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	677.8734130859375	2	677.875599	1353.73665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.083	1	21.083	20.583	21.583	0								0	0	0	0.28948	1	6936	6936		52.937	4.9772	1				21473	8963	13855	13911	21789	21789					0.07392616079187064
KQVIFMPQ	8	Unmodified	_KQVIFMPQ_					0	0	0		CDH10|p.T108Qfs*30|1|0.4|ENSG00000040731|chr5:24537584-24537584|T/-|frameshift_variant;CDH10|p.F102Lfs*36|1|0.41|ENSG00000040731|chr5:24537600-24537600|A/-|frameshift_variant	CDH10|p.T108Qfs*30|1|0.4|ENSG00000040731|chr5:24537584-24537584|T/-|frameshift_variant	CDH10|p.T108Qfs*30|1|0.4|ENSG00000040731|chr5:24537584-24537584|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7769470214844	2	495.775688	989.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.349	1	19.349	18.849	19.849	0								0	0	0	1.7419	1	5237	5237		45.952	0	1				21474	446	13856	13912	21790	21790					0.041636059221104915
KQVISVSLVL	10	Unmodified	_KQVISVSLVL_					0	0	0		tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.5689392089844	3	362.569142	1084.6856	-0.94551	-0.00034281	0.35501	0.00012871	-0.5905	-0.0002141	362.56929731257287	27.5	0.38425	27.5	27.356	27.74	0					22	13	2	0	0	0	0.64162	1	8739	8739		29.17	1.2878	1	112430			21475	22952	13857	13913	21791	21791					0.14664035096643602
KQVKTQVR	8	Unmodified	_KQVKTQVR_					0	0	0			REV__nc|ENSG00000228970|P0CB48|UBTFL6	REV__nc|ENSG00000228970|P0CB48|UBTFL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.80859375	2	493.808908	985.603263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.268	1	15.268	14.768	15.768	0								0	0	0	1.7419	1	3292	3292		15.642	2.1878	1		+		21476	21221	13858	13914	21792	21792					0.10988557808377664
KQVPENVAN	9	Unmodified	_KQVPENVAN_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.76910400390625	2	499.766906	997.519259	3.4111	0.0017048	1.4284	0.00071384	4.8395	0.0024186	499.76761616855583	39.054	0.20706	39.054	38.979	39.186	0					21	11	2	0	0	0	0.25716	1	13139	13139		54.776	3.4409	1	211110	+		21477	13022	13859	13915	21793	21793					0.020399819208023473
KQVQFPVIQ	9	Unmodified	_KQVQFPVIQ_					0	0	0		ENSG00000130348|ENST00000369046|QRSL1	ENSG00000130348|ENST00000369046|QRSL1	ENSG00000130348|ENST00000369046|QRSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8165893554688	2	543.818941	1085.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.824	1	26.824	26.324	27.324	0								0	0	0	0.29774	1	8197	8197		35.618	6.4687	1				21478	3637	13860	13916	21794	21794					0.08394308748324875
KQVQSILKKQ	10	Unmodified	_KQVQSILKKQ_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.3775024414062	2	600.377155	1198.73976	0.97851	0.00058747	-0.63388	-0.00038057	0.34463	0.00020691	600.376628175205	12.846	0.31135	12.846	12.63	12.942	0					14	7	3	0	0	0	0.23612	1	2985	2985		75.043	8.0814	1	206100	+		21479	15479	13861	13917	21795	21795					0.14833627248231096
KQWELVEGH	9	Unmodified	_KQWELVEGH_					0	0	0			REV__SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	REV__SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7962646484375	2	563.288005	1124.56146	1.7823	0.0010039	2.1242	0.0011965	3.9065	0.0022005	563.288577815028	28.971	0.48942	28.971	28.807	29.296	0					33	12	4	0	0	0	0.30951	1	10275	10275		49.442	5.0644	1	1175700	+		21480	13378	13862	13918	21796	21796					0.004159573291644847
KQWFDMSF	8	Unmodified	_KQWFDMSF_					0	0	0			REV__ENST00000525244.5_1_11:85956313-85988207:+|nuORF	REV__ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7491455078125	2	544.747127	1087.4797	1.8713	0.0010194	1.4381	0.00078343	3.3095	0.0018028	544.7480927212573	40.567	0.16762	40.567	40.506	40.674	0					10	6	2	0	0	0	0.57802	1	15473	15473		52.299	2.2746	1	88851	+		21481	13216	13863	13919	21797	21797					-0.06053861354280343
KQWKKSPR	8	Unmodified	_KQWKKSPR_					0	0	0			REV__ENST00000552270.1_1_12:105464468-105467659:-|nuORF	REV__ENST00000552270.1_1_12:105464468-105467659:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.3184204101562	2	529.3169	1056.61925	-1.1729	-0.00062083	2.0504	0.0010853	0.87754	0.0004645	529.3184587426264	24.003	0.16315	24.003	23.915	24.078	0					6	4	2	0	0	0	0.63077	1	7418	7418		44.117	4.864	1	44728	+		21482	20210	13864	13920	21798	21798					0.09320264045254589
KQWKLQQI	8	Unmodified	_KQWKLQQI_					0	0	0		ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7855834960938	2	536.319109	1070.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.292	1	19.292	18.792	19.792	0								0	0	0	1.7419	1	5210	5210		35.201	6.9464	1				21483	1415	13865	13921	21799	21799					0.09117728468186215
KQYEGGIFK	9	Unmodified	_KQYEGGIFK_					0	0	0		ENSG00000114491|ENST00000232607|UMPS;nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS	ENSG00000114491|ENST00000232607|UMPS	ENSG00000114491|ENST00000232607|UMPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2872314453125	2	535.287474	1068.5604	1.1987	0.00064166	0.06415	3.4339E-05	1.2629	0.000676	535.2872343641815	24.965	0.16702	24.965	24.857	25.024	0					5	3	2	0	0	0	0.50858	1	8817	8817		31.53	12.426	1	38914			21484	2853	13866	13922	21800	21800					0.028857429603021956
KQYKAIKE	8	Unmodified	_KQYKAIKE_					0	0	0			REV__ENSG00000134697|ENST00000373062|GNL2	REV__ENSG00000134697|ENST00000373062|GNL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.607	1	34.607	34.107	35.107	0								0	0	0	1.7419	1	13354	13354		14.865	1.4108	1		+		21485	14757	13867	13923	21801	21801					0.0781033333993264
KQYTVSAQK	9	Unmodified	_KQYTVSAQK_					0	0	0			REV__ENSG00000162512|ENST00000339394|SDC3	REV__ENSG00000162512|ENST00000339394|SDC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7915649414062	2	526.790381	1051.56621	3.4667	0.0018262	-1.3286	-0.00069989	2.1381	0.0011263	526.7896610495467	11.283	0.053965	11.283	11.249	11.303	0					8	3	3	0	0	0	0.037569	1	2170	2170		101.6	2.9713	1	134920	+		21486	15817	13868	13924	21802	21802					0.04248841471940068
KRAAASQGPL	10	Unmodified	_KRAAASQGPL_					0	0	0			REV__ENST00000543661.1_1_11:67231974-67232409:-|nuORF	REV__ENST00000543661.1_1_11:67231974-67232409:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7905578613281	2	499.790715	997.566878	0.8803	0.00043996	-0.97336	-0.00048647	-0.093061	-4.6511E-05	499.7903311103234	10.542	0.1696	10.542	10.523	10.693	0					15	8	3	0	0	0	0.30252	1	2026	2026		45.972	0.020292	1	595680	+		21487	20152	13869	13925	21803	21803					0.06799680911649375
KRAEMAKML	9	Unmodified	_KRAEMAKML_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.3002319335938	2	539.299004	1076.58346	1.5608	0.00084172	-1.3042	-0.00070334	0.25659	0.00013838	539.2989401502163	27.22	0.41964	27.22	27.125	27.545	0					37	15	3	0	0	0	0.19952	1	8357	8357		54.776	0	1	388310	+		21488	14367	13870	13926	21804	21804					0.048227224817310343
KRAMSKPI	8	Unmodified	_KRAMSKPI_					0	0	0		ENST00000338785.7_1_21:38884979-38885171:+|nuORF	ENST00000338785.7_1_21:38884979-38885171:+|nuORF	ENST00000338785.7_1_21:38884979-38885171:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.78009033203125	2	465.781305	929.548056	0.069256	3.2258E-05	-1.083	-0.00050442	-1.0137	-0.00047216	465.78052460168817	22.719	0.10537	22.719	22.657	22.763	0					5	3	2	0	0	0	0.59773	1	6463	6463		49.442	1.5259	1	44695			21489	8717	13871	13927	21805	21805					0.08046428016257323
KRAREVAASI	10	Unmodified	_KRAREVAASI_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.5567321777344	3	367.556007	1099.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.391	1	47.391	46.891	47.891	0								0	0	0	0.39264	1	18925	18925		32.751	1.2207	1		+		21490	14199	13872	13928	21806	21806					0.10035327865784893
KRAVEITGA	9	Unmodified	_KRAVEITGA_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5;HDAC5|p.E566Gfs*15|1|0.29|ENSG00000108840|chr17:44087599-44087600|-/C|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7978515625	2	472.779816	943.545079	-0.55765	-0.00026365	-0.2253	-0.00010652	-0.78295	-0.00037016	472.7797381979575	20.014	0.4644	20.014	19.6	20.064	0					22	10	3	0	0	0	0.44593	1	6001	6001		37.812	1.3648	1	497450			21491	2553	13873	13929	21807	21807					0.07104876163089102
KRAVIMMV	8	Unmodified	_KRAVIMMV_					0	0	0		QRFPR|p.K375Vfs*18|1|0.4|ENSG00000186867|chr4:121329486-121329487|TT/-|frameshift_variant;ENSG00000186867|ENST00000394427|QRFPR	QRFPR|p.K375Vfs*18|1|0.4|ENSG00000186867|chr4:121329486-121329487|TT/-|frameshift_variant	QRFPR|p.K375Vfs*18|1|0.4|ENSG00000186867|chr4:121329486-121329487|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2793273925781	2	474.280083	946.545614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.98	1	49.98	49.48	50.48	0								0	0	0	1.7419	1	18798	18798		33.516	1.5607	1				21492	7166	13874	13930	21808	21808					0.07020256286932636
KRCKAKRLQK	10	Unmodified	_KRCKAKRLQK_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;ENST00000493339.1_1_6:43111066-43112355:+|nuORF	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.26849365234375	3	420.267803	1257.78158	1.0571	0.00044428	0.37297	0.00015675	1.4301	0.00060102	420.267958682589	19.364	0.32875	19.364	19.124	19.453	0					19	7	4	0	0	0	0.4758	1	5820	5820		47.96	15.925	1	533010			21493	2751	13875	13931	21809	21809					0.1629990445576368
KRCSLCIGKK	10	Unmodified	_KRCSLCIGKK_					0	0	0			REV__nc|ENSG00000101670|Q9Y5X9-2|LIPG	REV__nc|ENSG00000101670|Q9Y5X9-2|LIPG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.2209167480469	3	379.219461	1134.63655	0.52101	0.00019758	2.4611	0.00093328	2.9821	0.0011309	379.220594875233	24.95	0.10992	24.95	24.889	24.999	0					5	3	2	0	0	0	0.57211	1	7442	7442		37.508	1.0614	1	39531	+		21494	13611	13876	13932	21810	21810					0.07462100264410765
KRDGEKSRGR	10	Unmodified	_KRDGEKSRGR_					0	0	0			REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	396.87548828125	3	396.890048	1187.64832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.132	1	14.132	13.632	14.632	0								0	0	0	0.4201	1	2948	2948		20.837	1.7336	1		+		21495	21182	13877	13933	21811	21811					0.06199756603587048
KRDKGETIQ	9	Unmodified	_KRDKGETIQ_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1;nc|ENSG00000111361|Q14232-2|EIF2B1;ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.799072265625	2	537.798737	1073.58292	0.22222	0.00011951	0.22478	0.00012089	0.447	0.0002404	537.7989273934928	14.453	0.17005	14.453	14.366	14.536	0					7	4	2	0	0	0	0.50858	1	3528	3528		31.53	1.0262	1	861140			21496	2664	13878	13934	21812	21812					0.04907342357910238
KRDKVALN	8	Unmodified	_KRDKVALN_					0	0	0			REV__ENSG00000125931|ENST00000651998|CITED1	REV__ENSG00000125931|ENST00000651998|CITED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2880554199219	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.273	1	13.273	12.773	13.773	0								0	0	0	1.7419	1	2727	2727		42.396	5.3677	1		+		21497	14449	13879	13935	21813	21813					0.0874858239999412
KRDSLRKRSVR	11	Unmodified	_KRDSLRKRSVR_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.625	3	467.623414	1399.84841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.506	1	13.506	13.006	14.006	0								0	0	0	0.45674	1	3303	3303		21.78	7.5372	1				21498	1373;22485	13880	13936	21814	21814					0.16448231271192526
KRDVTEAIQ	9	Unmodified	_KRDVTEAIQ_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1;SPTA1|p.N501Tfs*33|1|0.11|ENSG00000163554|chr1:158671440-158671440|T/-|frameshift_variant;SPTA1|p.D609Vfs*11|1|0.27|ENSG00000163554|chr1:158669415-158669416|-/CTTCATCA|frameshift_variant	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2937622070312	2	530.293288	1058.57202	2.3809	0.0012626	-1.3515	-0.00071668	1.0294	0.0005459	530.2925421386658	16.068	0.22917	16.068	15.979	16.208	0					11	5	3	0	0	0	0.48623	1	4294	4294		33.922	1.1711	1	231580			21499	5574	13881	13937	21815	21815					0.04507939983614051
KREDFGFKA	9	Unmodified	_KREDFGFKA_					0	0	0		PIGN|p.G167_A168insFK|1|0.1|ENSG00000197563|chr18:62154592-62154593|-/TTTGAA|inframe_insertion	PIGN|p.G167_A168insFK|1|0.1|ENSG00000197563|chr18:62154592-62154593|-/TTTGAA|inframe_insertion	PIGN|p.G167_A168insFK|1|0.1|ENSG00000197563|chr18:62154592-62154593|-/TTTGAA|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2910766601562	2	549.290548	1096.56654	1.8917	0.0010391	-0.76382	-0.00041956	1.1279	0.00061952	549.290115724391	34.365	0.10752	34.365	34.293	34.4	0					5	3	2	0	0	0	0.33044	1	12151	12151		47.657	4.7931	1	81913			21500	11932	13882	13938	21816	21816					0.022122611918121038
KREEAKKI	8	Unmodified	_KREEAKKI_					0	0	0		ENST00000466974.5_1_20:5922633-5923195:-|nuORF;TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant	ENST00000466974.5_1_20:5922633-5923195:-|nuORF	ENST00000466974.5_1_20:5922633-5923195:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.308837890625	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.242	1	20.242	19.742	20.742	0								0	0	0	1.7419	1	6248	6248		45.952	0	1				21501	9795	13883	13939	21817	21817					0.10265138088516323
KREGDGVRINR	11	Unmodified	_KREGDGVRINR_					0	0	0			REV__ENST00000430771.2_1_12:6712170-6712293:-|nuORF	REV__ENST00000430771.2_1_12:6712170-6712293:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	650.3672485351562	2	650.365641	1298.71673	2.8279	0.0018391	-0.82601	-0.00053721	2.0019	0.0013019	650.3651177259142	41.056	0.22629	41.056	40.959	41.186	0					12	5	3	0	0	0	0.1937	1	16293	16293		75.043	2.1641	1	312380	+		21502	19162	13884	13940	21818	21818					0.07932001183485227
KREKKKHQ	8	Unmodified	_KREKKKHQ_					0	0	0		ENST00000496972.6_1_2:25600096-25600174:-|nuORF	ENST00000496972.6_1_2:25600096-25600174:-|nuORF	ENST00000496972.6_1_2:25600096-25600174:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.2252502441406	3	361.22448	1080.65161	3.1108	0.0011237	-0.85543	-0.000309	2.2554	0.00081469	361.2241306662101	16.474	0.21622	16.474	16.418	16.634	0					5	4	2	0	0	0	0.65148	1	4582	4582		40.778	2.9666	1	724240			21503	10120	13885	13941	21819	21819					0.11451051448261751
KRELNTAEI	9	Unmodified	_KRELNTAEI_					0	0	0		ENST00000517562.2_1_8:91973043-91983329:-|nuORF	ENST00000517562.2_1_8:91973043-91983329:-|nuORF	ENST00000517562.2_1_8:91973043-91983329:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3021850585938	2	537.301113	1072.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.118	1	36.118	35.618	36.618	0								0	0	0	0.3119	1	14006	14006		32.812	0	1				21504	10272	13886	13942	21820	21820					0.054282265006804664
KREPCLAH	8	Unmodified	_KREPCLAH_					0	0	0			REV__ENSG00000188315|ENST00000343010|C3orf62	REV__ENSG00000188315|ENST00000343010|C3orf62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2555847167969	2	477.252911	952.49127	3.4976	0.0016692	2.123	0.0010132	5.6206	0.0026824	477.25412724131974	31.127	0.11563	31.127	31.065	31.181	0					7	4	2	0	0	0	0.41952	1	10290	10290		68.485	21.718	1	102860	+		21505	17166	13887	13943	21821	21821					0.013123804597171329
KRETKAKN	8	Unmodified	_KRETKAKN_					0	0	0		ENST00000492798.1_1_9:136217794-136218218:+|nuORF	ENST00000492798.1_1_9:136217794-136218218:+|nuORF	ENST00000492798.1_1_9:136217794-136218218:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.79119873046875	2	487.790715	973.566878	0.80373	0.00039205	-0.67163	-0.00032761	0.1321	6.4439E-05	487.7902516468752	48.658	0.69513	48.658	48.554	49.249	0					43	38	2	0	0	0	0.78978	1	19407	19407		21.96	3.6355	1	58981			21506	10084	13888	13944	21822	21822					0.0790368091164737
KRETTGAGQK	10	Unmodified	_KRETTGAGQK_					0	0	0			REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.297119140625	2	538.296362	1074.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.191	1	14.191	13.691	14.691	0								0	0	0	0.38475	1	3474	3474		35.152	0.97948	1		+		21507	15326	13889	13945	21823	21823					0.0438645821514001
KRETVLRK	8	Unmodified	_KRETVLRK_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3301391601562	2	515.330008	1028.64546	0.18437	9.5011E-05	-0.11584	-5.9698E-05	0.068526	3.5314E-05	515.3301157890704	17.655	0.15217	17.655	17.579	17.731	0					10	4	3	0	0	0	0.50061	1	4242	4242		49.442	0	1	590360			21508	5317	13890	13946	21824	21824					0.1322853321673847
KREVDPVAE	9	Unmodified	_KREVDPVAE_					0	0	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7802734375	2	521.780013	1041.54547	0.079888	4.1684E-05	0.35268	0.00018402	0.43257	0.00022571	521.7801827271103	12.397	0.49092	12.397	12.139	12.63	0					64	16	5	0	0	0	0.44593	1	2691	2691		37.812	5.061	1	4607900	+		21509	16638	13891	13947	21825	21825					0.026362510922808724
KRFEELQK	8	Unmodified	_KRFEELQK_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.306640625	2	539.306198	1076.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.871	1	13.871	13.371	14.371	0								0	0	0	1.7419	1	3255	3255		60.972	0	1				21510	6843	13892	13948	21826	21826					0.06260834225895451
KRFEVFPGK	9	Unmodified	_KRFEVFPGK_					0	0	0			REV__ALG10B|p.A228V|1|0.15|ENSG00000175548|chr12:38320474-38320474|C/T|missense_variant	REV__ALG10B|p.A228V|1|0.15|ENSG00000175548|chr12:38320474-38320474|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.3194580078125	2	554.319109	1106.62366	1.817	0.0010072	-0.70999	-0.00039356	1.107	0.00061365	554.3187442788494	37.999	0.34638	37.999	37.848	38.194	0					28	15	3	0	0	0	0.28897	1	14416	14416		51.193	6.8155	1	218700	+		21511	12139	13893	13949	21827	21827					0.07461728468183537
KRFEVFPGK	9	Unmodified	_KRFEVFPGK_					0	0	0			REV__ALG10B|p.A228V|1|0.15|ENSG00000175548|chr12:38320474-38320474|C/T|missense_variant	REV__ALG10B|p.A228V|1|0.15|ENSG00000175548|chr12:38320474-38320474|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.3197631835938	2	554.319109	1106.62366	1.8204	0.0010091	-0.51135	-0.00028345	1.3091	0.00072563	554.3188111405551	37.844	0.29947	37.844	37.739	38.039	0					17	6	3	0	0	0	0.27249	1	14844	14844		52.937	5.0211	1	366880	+		21512	12139	13893	13949	21828	21828					0.07461728468183537
KRFLGATL	8	Unmodified	_KRFLGATL_					0	0	0			REV__ENST00000225724.9_1_17:28849705-28849786:+|nuORF	REV__ENST00000225724.9_1_17:28849705-28849786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.28204345703125	2	453.281995	904.549437	0.72098	0.00032681	-0.92352	-0.00041861	-0.20254	-9.1806E-05	453.2815883232916	26.317	0.15932	26.317	26.217	26.376	0					8	3	3	0	0	0	0.66372	1	9420	9420		38.806	3.1879	1	554820	+		21513	17897	13894	13950	21829	21829					0.09334385376666887
KRGCQASCI	9	Unmodified	_KRGCQASCI_					0	0	0		ENST00000463145.2_3_20:2730128-2740700:+|nuORF;ENST00000449079.7_1_20:2740250-2740700:+|nuORF	ENST00000463145.2_3_20:2730128-2740700:+|nuORF	ENST00000463145.2_3_20:2730128-2740700:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.23724365234375	2	483.236404	964.458255	2.4167	0.0011678	-0.13708	-6.6242E-05	2.2796	0.0011016	483.23598110447153	22.863	0.21787	22.863	22.755	22.973	0					10	4	3	0	0	0	0.51817	1	7682	7682		30.504	2.2494	1	924490			21514	9635	13895	13951	21830	21830					-0.025395696546411273
KRGGAPCFPGV	11	Unmodified	_KRGGAPCFPGV_					0	0	0		ENST00000309117.10_1_21:38639566-38639725:-|nuORF	ENST00000309117.10_1_21:38639566-38639725:-|nuORF	ENST00000309117.10_1_21:38639566-38639725:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7884521484375	2	544.787118	1087.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.481	1	10.481	9.981	10.981	0								0	0	0	0.45674	1	1995	1995		14.865	3.3539	1				21515	8536	13896	13952	21831	21831					0.01940625039560473
KRGGGPRP	8	Unmodified	_KRGGGPRP_					0	0	0			REV__ENST00000433510.2_1_17:46724166-46724286:-|nuORF	REV__ENST00000433510.2_1_17:46724166-46724286:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.7464599609375	2	412.746111	823.477669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.095	1	51.095	50.595	51.595	0								0	0	0	1.7419	1	20043	20043		13.775	0	1		+		21516	19186	13897	13953	21832	21832					0.058868907427950035
KRGGSLPV	8	Unmodified	_KRGGSLPV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.C2696Sfs*49|1|0.18|ENSG00000142798|chr1:21847425-21847431|GCCCGGC/-|frameshift_variant;HSPG2|p.P3112Lfs*13|1|0.47|ENSG00000142798|chr1:21841279-21841279|G/-|frameshift_variant;HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant;HSPG2|p.A2287V|1|0.21|ENSG00000142798|chr1:21852098-21852098|G/A|missense_variant;ENST00000493940.2_1_1:22177888-22181121:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.2505187988281	2	407.250695	812.486836	-1.3915	-0.0005667	0.77088	0.00031394	-0.62066	-0.00025276	407.25105217707005	15.275	0.20065	15.275	15.178	15.379	0					8	6	2	0	0	0	0.73426	1	3462	3462		29.15	0	1	70915			21517	4513	13898	13954	21833	21833					0.07309239308472115
KRGIGTSH	8	Unmodified	_KRGIGTSH_					0	0	0			REV__ENSG00000172031|ENST00000370383|EPHX4	REV__ENSG00000172031|ENST00000370383|EPHX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.2431945800781	2	428.243401	854.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.363	1	15.363	14.863	15.863	0								0	0	0	1.7419	1	3951	3951		65.803	23.329	1		+		21518	16445	13899	13955	21834	21834					0.039191671603248324
KRGIGTSH	8	Unmodified	_KRGIGTSH_					0	0	0			REV__ENSG00000172031|ENST00000370383|EPHX4	REV__ENSG00000172031|ENST00000370383|EPHX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.24310302734375	2	428.243401	854.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.302	1	15.302	14.802	15.802	0								0	0	0	1.7419	1	4004	4004		51.335	10.763	1		+		21519	16445	13899	13955	21835	21835					0.039191671603248324
KRGIILGAK	9	Unmodified	_KRGIILGAK_					0	0	0			REV__tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	REV__tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.323974609375	2	478.324194	954.633835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.78	1	19.78	19.28	20.28	0								0	0	0	0.29774	1	6311	6311		35.618	5.1146	1		+		21520	22094	13900	13956	21836	21836					0.15470336193413914
KRGKAEKPLEE	11	Unmodified	_KRGKAEKPLEE_					0	0	0			REV__nc|ENSG00000215187|A8MTA8-2|CIMIP2B	REV__nc|ENSG00000215187|A8MTA8-2|CIMIP2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	642.867431640625	2	642.867151	1283.71975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.559	1	24.559	24.059	25.059	0								0	0	0	0.34077	1	8609	8609		46.457	7.7032	1		+		21521	17596	13901	13957	21837	21837					0.0892383151760896
KRGMAIQK	8	Oxidation (M)	_KRGM(Oxidation (M))AIQK_		KRGM(1)AIQK		KRGM(85)AIQK	0	0	1			REV__ENSG00000008256|ENST00000350796|CYTH3	REV__ENSG00000008256|ENST00000350796|CYTH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2794189453125	2	474.276386	946.53822	2.36	0.0011193	4.3262	0.0020518	6.6863	0.0031711	474.27881268743926	11.916	2.5814	11.916	11.76	14.341	0					176	62	6	0	0	0	0.29152	1	2874	2874		85.359	8.5128	1	259270000	+		21522	12878	13902	13958	21838	21838		496			0.06281240010866895
KRGMSEAISK	10	Oxidation (M)	_KRGM(Oxidation (M))SEAISK_		KRGM(1)SEAISK		KRGM(65)SEAISK	0	0	1			REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.8004760742188	2	561.800423	1121.58629	0.6784	0.00038112	-0.22068	-0.00012398	0.45771	0.00025714	561.8001431950967	21.036	0.11555	21.036	20.98	21.095	0					4	2	2	0	0	0	0.31894	1	6924	6924		65.157	6.9273	1	130610	+		21523	22099	13903	13959	21839	21839		799			0.03036269140238801
KRGQAAIKD	9	Unmodified	_KRGQAAIKD_					0	0	0			REV__nc|ENSG00000184486|P20265-3|POU3F2	REV__nc|ENSG00000184486|P20265-3|POU3F2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.19384765625	3	329.529569	985.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.586	1	17.586	17.086	18.086	0								0	0	0	0.3245	1	5249	5249		30.318	1.1477	1		+		21524	16984	13904	13960	21840	21840					0.07351680911642688
KRGRNIIKK	9	Unmodified	_KRGRNIIKK_					0	0	0		NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	NANOGNB|p.C151Vfs*21|1|0.43|ENSG00000205857|chr12:7770451-7770451|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.8740844726562	2	556.872374	1111.73019	3.5102	0.0019547	-0.2159	-0.00012023	3.2943	0.0018345	556.872244415219	37.59	0.30244	37.59	37.484	37.787	0					16	6	3	0	0	0	0.44593	1	14717	14717		47.916	9.1095	1	829400			21525	11405	13905	13961	21841	21841					0.17879903753350845
KRGVGKDKHK	10	Unmodified	_KRGVGKDKHK_					0	0	0		ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.2377624511719	3	384.903518	1151.68872	-0.59905	-0.00023058	0.52662	0.0002027	-0.072429	-2.7878E-05	385.2380035762245	13.047	0.14952	13.047	12.978	13.127	0					5	3	2	0	0	0	0.71467	1	2933	2933		20.03	0.92695	1	79912			21526	7197	13906	13962	21842	21842					0.1189472299404315
KRHDVAEI	8	Unmodified	_KRHDVAEI_					0	0	0			REV__ENST00000445654.2_1_11:70417416-70506001:-|nuORF	REV__ENST00000445654.2_1_11:70417416-70506001:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2696533203125	2	484.269616	966.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.587	1	12.587	12.087	13.087	0								0	0	0	1.7419	1	2714	2714		76.847	0.072494	1		+		21527	19275	13907	13963	21843	21843					0.04007705503283887
KRHELWQE	8	Unmodified	_KRHELWQE_					0	0	0		KIFAP3|p.E347Gfs*10|1|0.14|ENSG00000075945|chr1:170016605-170016606|-/C|frameshift_variant;nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	KIFAP3|p.E347Gfs*10|1|0.14|ENSG00000075945|chr1:170016605-170016606|-/C|frameshift_variant	KIFAP3|p.E347Gfs*10|1|0.14|ENSG00000075945|chr1:170016605-170016606|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.2938232421875	2	563.293622	1124.57269	0.43179	0.00024322	-0.11711	-6.5969E-05	0.31467	0.00017725	563.2935372505221	15.061	0.36027	15.061	14.967	15.328	0					12	8	3	0	0	0	0.46905	1	3818	3818		63.306	5.0763	1	1126900			21528	1551	13908	13964	21844	21844					0.015387794233447494
KRIAFRSK	8	Unmodified	_KRIAFRSK_					0	0	0			REV__AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	REV__AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.3208312988281	2	503.319443	1004.62433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.103	1	51.103	50.603	51.603	0								0	0	0	1.7419	1	20046	20046		20.947	0	1		+		21529	12189	13909	13965	21845	21845					0.12220567907900204
KRIAHGSA	8	Unmodified	_KRIAHGSA_					0	0	0			REV__AIFM3|p.R578H|1|0.15|ENSG00000183773|chr22:20980100-20980100|G/A|missense_variant	REV__AIFM3|p.R578H|1|0.15|ENSG00000183773|chr22:20980100-20980100|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.24554443359375	2	420.245944	838.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.217	1	48.217	47.717	48.717	0								0	0	0	1.7419	1	19176	19176		37.159	10.363	1		+		21530	12122	13910	13966	21846	21846					0.05163471022945032
KRILAVVD	8	Unmodified	_KRILAVVD_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.29486083984375	2	457.295102	912.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.759	1	13.759	13.259	14.259	0								0	0	0	1.7419	1	2871	2871		18.324	0.95945	1		+		21531	15714	13911	13967	21847	21847					0.11586654548125352
KRIVTKVEE	9	Unmodified	_KRIVTKVEE_					0	0	0			REV__CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	REV__CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.55755615234375	3	367.892396	1100.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.718	1	44.718	44.218	45.218	0								0	0	0	0.3245	1	17917	17917		30.318	3.6248	1		+		21532	12319	13912	13968	21848	21848					0.1090567643148006
KRIWAMKK	8	Unmodified	_KRIWAMKK_					0	0	0			REV__ENST00000576084.5_1_17:53029422-53031174:-|nuORF	REV__ENST00000576084.5_1_17:53029422-53031174:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.8278198242188	2	530.826047	1059.63754	2.4248	0.0012871	0.71876	0.00038154	3.1436	0.0016687	530.8264590128962	14.264	0.32176	14.264	14.184	14.505	0					18	8	4	0	0	0	0.4723	1	3432	3432		62.978	62.978	1	2222500	+		21533	20416	13913	13969	21849	21849					0.1101068269560983
KRKAELEK	8	Unmodified	_KRKAELEK_					0	0	0		tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.30859375	2	501.308741	1000.60293	-2.1076	-0.0010566	1.6346	0.00081946	-0.47296	-0.0002371	501.30961141870523	15.468	0.13598	15.468	15.399	15.535	0					9	4	3	0	0	0	0.38291	1	3481	3481		52.937	0	1	400300			21534	22650	13914	13970	21850	21850					0.10265138088516323
KRKAVPKSAV	10	Unmodified	_KRKAVPKSAV_					0	0	0		ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.35302734375	2	542.353483	1082.69241	0.31637	0.00017158	0.50081	0.00027162	0.81718	0.0004432	542.3531807657329	23.788	0.16779	23.788	23.679	23.847	0					5	3	2	0	0	0	0.5276	1	8258	8258		37.812	0.65241	1	81384			21535	1393	13915	13971	21851	21851					0.1543739276787619
KRKEQTEKH	9	Unmodified	_KRKEQTEKH_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant;ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant;ANKRD11|p.D1104Mfs*214|1|0.28|ENSG00000167522|chr16:89283233-89283233|T/-|frameshift_variant	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.3307495117188	2	592.330736	1182.64692	0.27087	0.00016045	0.005995	3.551E-06	0.27687	0.000164	592.3306558131078	16.817	0.17191	16.817	16.728	16.9	0					13	4	4	0	0	0	0.20551	1	4637	4637		60.972	2.19	1	3641800			21536	5996	13916	13972	21852	21852					0.06290122514860741
KRKKLPKDK	9	Unmodified	_KRKKLPKDK_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.9239196777344	3	380.92403	1139.75026	0.76544	0.00029157	-1.2185	-0.00046415	-0.45304	-0.00017257	380.92355121500566	19.931	0.30031	19.931	19.795	20.095	0					11	6	2	0	0	0	0.60749	1	6122	6122		20.947	4.2295	1	163510	+		21537	15972	13917	13973	21853	21853					0.18597654693303411
KRKLEENGI	9	Unmodified	_KRKLEENGI_					0	0	0		FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant;ENSG00000100376|ENST00000441876|FAM118A;ENST00000483102.5_1_22:45731056-45736283:+|nuORF;ENST00000462361.1_1_22:45731157-45736283:+|nuORF;nc|ENSG00000100376|Q9NWS6-2|FAM118A	FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant	FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8172607421875	2	543.81693	1085.61931	0.34814	0.00018932	-0.26787	-0.00014567	0.080271	4.3653E-05	543.8170748819529	27.084	0.16962	27.084	26.999	27.169	0					6	4	2	0	0	0	0.28504	1	9429	9429		44.377	3.599	1	406820			21538	2015	13918	13974	21854	21854					0.07992219254629163
KRKLPCDTPG	10	Unmodified	_KRKLPCDTPG_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;NCOA3|p.P467Hfs*15|1|0.2|ENSG00000124151|chr20:47635604-47635604|C/-|frameshift_variant;NCOA3|p.S287Ifs*8|1|0.19|ENSG00000124151|chr20:47633529-47633530|-/A|frameshift_variant	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.8058471679688	2	557.805508	1113.59646	3.4792	0.0019407	-2.9143	-0.0016256	0.56494	0.00031513	557.8038201734016	14.936	0.21832	14.936	14.828	15.046	0					6	4	2	0	0	0	0.5276	1	3843	3843		30.318	0	1	781800			21539	3347	13919	13975	21855	21855					0.044208768654925734
KRKMEFDK	8	Unmodified	_KRKMEFDK_					0	0	0			REV__ENSG00000214842|ENST00000399080|RAD51AP2	REV__ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.29541015625	2	541.294776	1080.575	0.64625	0.00034981	0.31355	0.00016972	0.95979	0.00051953	541.2950133171728	16.506	0.65499	16.506	16.401	17.056	0					17	13	3	0	0	0	0.49216	1	4592	4592		60.972	0	1	753900	+		21540	17587	13920	13976	21856	21856					0.03793491836790963
KRKNHQGKD	9	Unmodified	_KRKNHQGKD_					0	0	0		nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.8117065429688	2	555.809971	1109.60539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.974	1	41.974	41.474	42.474	0								0	0	0	0.27939	1	15927	15927		39.253	5.7599	1				21541	5759	13921	13977	21857	21857					0.05496986546199878
KRKRQATY	8	Unmodified	_KRKRQATY_					0	0	0		ENST00000321341.10_2_18:48405602-48434530:+|nuORF	ENST00000321341.10_2_18:48405602-48434530:+|nuORF	ENST00000321341.10_2_18:48405602-48434530:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8135375976562	2	525.811982	1049.60941	3.4529	0.0018156	-0.3135	-0.00016484	3.1394	0.0016507	525.8118050278226	34.417	0.35802	34.417	34.31	34.668	0					21	7	4	0	0	0	0.6088	1	13200	13200		45.952	19.259	1	1665600			21542	8614	13922	13978	21858	21858					0.08659076039884894
KRKSTKALA	9	Unmodified	_KRKSTKALA_					0	0	0			REV__SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant	REV__SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.82470703125	2	501.824558	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.32	1	14.32	13.82	14.82	0								0	0	0	0.36266	1	3688	3688		21.96	1.013	1		+		21543	13851	13923	13979	21859	21859					0.13381130842458333
KRLDEVSKQH	10	Unmodified	_KRLDEVSKQH_					0	0	0			REV__tr|U7SP75|U7SP75_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01755PE=4SV=1	REV__tr|U7SP75|U7SP75_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01755PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3441772460938	2	620.343843	1238.67313	0.17466	0.00010835	0.011104	6.8884E-06	0.18577	0.00011524	620.3440299447487	17.626	0.11696	17.626	17.517	17.634	0					6	2	3	0	0	0	0.62235	1	5256	5256		31.53	0.96095	1	204090	+		21544	21819	13924	13980	21860	21860					0.06334391686345953
KRLEEEKK	8	Unmodified	_KRLEEEKK_					0	0	0			REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.3118286132812	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.33	1	20.33	19.83	20.83	0								0	0	0	1.7419	1	6571	6571		56.721	1.9447	1		+		21545	14056	13925	13981	21861	21861					0.08144816880326289
KRLETVAL	8	Unmodified	_KRLETVAL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2924499511719	2	465.292559	928.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.542	1	11.542	11.042	12.042	0								0	0	0	1.7419	1	2389	2389		106.42	10.6	1				21546	11514	13926	13982	21862	21862					0.10342350685516521
KRLIKDLQQ	9	Unmodified	_KRLIKDLQQ_					0	0	0		NAV3|p.K498Rfs*8|1|0.38|ENSG00000067798|chr12:78007026-78007026|A/-|frameshift_variant;NAV3|p.K1098Nfs*81|1|0.22|ENSG00000067798|chr12:78119487-78119487|A/-|frameshift_variant;NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	NAV3|p.K498Rfs*8|1|0.38|ENSG00000067798|chr12:78007026-78007026|A/-|frameshift_variant	NAV3|p.K498Rfs*8|1|0.38|ENSG00000067798|chr12:78007026-78007026|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.3562622070312	2	571.356222	1140.69789	-0.031556	-1.803E-05	0.82553	0.00047167	0.79398	0.00045364	571.3566377721277	26.2	0.21408	26.2	26.112	26.326	0					11	5	3	0	0	0	0.12239	1	9017	9017		74.255	7.2931	1	438180			21547	1414	13927	13983	21863	21863					0.13317071559686156
KRLLDSLKNL	10	Unmodified	_KRLLDSLKNL_					0	0	0			REV__nc|ENSG00000196116|Q8NHU6-3|TDRD7	REV__nc|ENSG00000196116|Q8NHU6-3|TDRD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.58734130859375	3	400.587195	1198.73976	0.065062	2.6063E-05	0.48617	0.00019475	0.55123	0.00022082	400.58737432617926	12.862	0.23291	12.862	12.683	12.915	0					8	5	2	0	0	0	0.73697	1	2971	2971		15.333	0	1	125920	+		21548	17225	13928	13984	21864	21864					0.14833627248231096
KRLLQLTKQ	9	Unmodified	_KRLLQLTKQ_					0	0	0			REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.5800476074219	3	376.580152	1126.71863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.178	1	15.178	14.678	15.678	0								0	0	0	0.24544	1	4097	4097		44.377	1.5129	1		+		21549	14471	13929	13985	21865	21865					0.16033661939354715
KRLLSDSIA	9	Unmodified	_KRLLSDSIA_					0	0	0			REV__ENSG00000005100|ENST00000225296|DHX33	REV__ENSG00000005100|ENST00000225296|DHX33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.80059814453125	2	501.800749	1001.58694	-0.99641	-0.0005	0.76507	0.00038391	-0.23135	-0.00011609	501.80140816022356	21.26	0.13391	21.26	21.182	21.316	0					7	4	2	0	0	0	0.35045	1	6075	6075		45.952	8.7928	1	154410	+		21550	12833	13930	13986	21866	21866					0.08621431851611305
KRLPLFYTL	9	Unmodified	_KRLPLFYTL_					0	0	0		ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.2359619140625	3	384.237615	1149.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.393	1	36.393	35.893	36.893	0								0	0	0	0.3428	1	13722	13722		26.693	4.733	1				21551	6175	13931	13987	21867	21867					0.12215758679121791
KRLTKTQK	8	Unmodified	_KRLTKTQK_					0	0	0		ENST00000360003.7_1_10:121618406-121618611:-|nuORF	ENST00000360003.7_1_10:121618406-121618611:-|nuORF	ENST00000360003.7_1_10:121618406-121618611:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8238830566406	2	501.824558	1001.63456	-0.55823	-0.00028013	1.472	0.00073866	0.91373	0.00045853	501.82548563847365	11.879	2.6337	11.879	11.789	14.423	0					104	62	2	0	0	0	0.72381	1	3047	3047		30.504	0	1	35868000			21552	8856	13932	13988	21868	21868					0.13381130842458333
KRLTKTQK	8	Unmodified	_KRLTKTQK_					0	0	0		ENST00000360003.7_1_10:121618406-121618611:-|nuORF	ENST00000360003.7_1_10:121618406-121618611:-|nuORF	ENST00000360003.7_1_10:121618406-121618611:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.824462890625	2	501.824558	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.951	1	12.951	12.451	13.451	0								0	0	0	1.7419	1	2886	2886		63.306	0	1				21553	8856	13932	13988	21869	21869					0.13381130842458333
KRLYRAPID	9	Unmodified	_KRLYRAPID_					0	0	0		nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3358764648438	2	566.33529	1130.65603	1.2005	0.00067987	-2.3757	-0.0013455	-1.1753	-0.00066559	566.3340363362391	28.186	0.16538	28.186	28.108	28.273	0					9	5	2	0	0	0	0.24095	1	8770	8770		56.721	3.3696	1	132300			21554	3120	13933	13989	21870	21870					0.09592515871190699
KRMAQKTQ	8	Unmodified	_KRMAQKTQ_					0	0	0		ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7773742675781	2	495.779293	989.544034	0.10898	5.4032E-05	-3.9887	-0.0019775	-3.8797	-0.0019235	495.77716619995346	17.444	0.13702	17.444	17.376	17.513	0					9	4	3	0	0	0	0.28427	1	4343	4343		87.754	1.8925	1	255560			21555	4292	13934	13990	21871	21871					0.04884338522538201
KRMEELKK	8	Unmodified	_KRMEELKK_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.8119506835938	2	531.310426	1060.6063	1.0655	0.00056613	0.88754	0.00047156	1.9531	0.0010377	531.3111034973558	22.18	0.16198	22.18	22.097	22.259	0					13	5	3	0	0	0	0.37144	1	6223	6223		74.255	12.564	1	228110	+		21556	15493	13935	13991	21872	21872					0.0784206487087431
KRMGETLPK	9	Unmodified	_KRMGETLPK_					0	0	0			REV__ENSG00000148399|ENST00000277540|DPH7	REV__ENSG00000148399|ENST00000277540|DPH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3052978515625	2	530.302601	1058.59065	2.3849	0.0012647	3.3349	0.0017685	5.7198	0.0030332	530.3049538390319	12.01	0.066597	12.01	11.975	12.041	0					4	2	2	0	0	0	0.61124	1	2445	2445		10.866	0	1	42353	+		21557	15385	13936	13992	21873	21873					0.06369778353814581
KRMIRMAK	8	Unmodified	_KRMIRMAK_					0	0	0		ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF	ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.3115844726562	2	517.309706	1032.60486	4.6916	0.002427	-0.52992	-0.00027413	4.1617	0.0021529	517.309351915639	15.185	0.28331	15.185	14.978	15.262	0					30	12	3	0	0	0	0.49887	1	3361	3361		60.294	60.294	1	401190			21558	1901	13937	13993	21874	21874					0.08986152301122274
KRMRTSFK	8	Unmodified	_KRMRTSFK_					0	0	0		ENSG00000106689|ENST00000373615|LHX2;nc|ENSG00000143355|Q9NQ69-3|LHX9;nc|ENSG00000143355|Q9NQ69-4|LHX9;LHX9|p.P345Rfs*18|1|0.21|ENSG00000143355|chr1:197929096-197929096|C/-|frameshift_variant;nc|ENSG00000143355|Q9NQ69-2|LHX9;ENSG00000143355|ENST00000367387|LHX9	ENSG00000106689|ENST00000373615|LHX2	ENSG00000106689|ENST00000373615|LHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.3062744140625	2	527.302936	1052.59132	2.0149	0.0010625	4.001	0.0021097	6.0159	0.0031722	527.3054414473429	30.186	0.13522	30.186	30.098	30.234	0					5	3	2	0	0	0	0.51384	1	10850	10850		58.782	2.3482	1	62254			21559	2454	13938	13994	21875	21875					0.06712617793550635
KRMYEEPTL	9	Unmodified	_KRMYEEPTL_					0	0	0			REV__tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1	REV__tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.7974853515625	2	583.797349	1165.58014	1.3688	0.00079907	-0.61906	-0.00036141	0.74969	0.00043767	583.7969068610946	43.107	0.69412	43.107	42.657	43.351	0					53	35	2	0	0	0	0.33044	1	16778	16778		47.657	1.7054	1	181510	+		21560	21712	13939	13995	21876	21876					0.0039775090874627494
KRNETRIR	8	Unmodified	_KRNETRIR_					0	0	0		ENST00000463074.1_1_2:233421184-233421241:+|nuORF	ENST00000463074.1_1_2:233421184-233421241:+|nuORF	ENST00000463074.1_1_2:233421184-233421241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8217163085938	2	536.820338	1071.62612	3.3458	0.0017961	-0.89353	-0.00047967	2.4523	0.0013164	536.8202191497674	19.552	0.31449	19.552	19.409	19.723	0					12	6	4	0	0	0	0.62915	1	6110	6110		51.335	8.4712	1	479280			21561	9755	13940	13996	21877	21877					0.09317576925832327
KRNRLVSL	8	Unmodified	_KRNRLVSL_					0	0	0			REV__ENSG00000134640|ENST00000257068|MTNR1B	REV__ENSG00000134640|ENST00000257068|MTNR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.3182067871094	2	493.3169	984.619247	2.7655	0.0013643	0.28533	0.00014076	3.0509	0.001505	493.3170483112256	42.98	0.24533	42.98	42.862	43.107	0					15	7	3	0	0	0	0.61938	1	17185	17185		45.952	0	1	188590	+		21562	14756	13941	13997	21878	21878					0.12632264045259944
KRNRRTKK	8	Unmodified	_KRNRRTKK_					0	0	0			REV__CHD7|p.D652Tfs*59|2|0.28|ENSG00000171316|chr8:60781281-60781281|A/-|frameshift_variant	REV__CHD7|p.D652Tfs*59|2|0.28|ENSG00000171316|chr8:60781281-60781281|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.853759765625	2	543.851973	1085.68939	3.6521	0.0019862	-0.37164	-0.00020212	3.2805	0.0017841	543.8518497629403	15.971	0.41808	15.971	15.865	16.283	0					14	8	2	0	0	0	0.41701	1	4338	4338		57.811	57.811	1	2149100	+		21563	12456	13942	13998	21879	21879					0.1499756243374577
KRPELINK	8	Unmodified	_KRPELINK_					0	0	0			REV__ENST00000473739.5_1_X:18912213-18919671:-|nuORF	REV__ENST00000473739.5_1_X:18912213-18919671:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.31097412109375	2	499.311284	996.608014	-0.013574	-6.7776E-06	-0.47462	-0.00023698	-0.48819	-0.00024376	499.31119724771014	24.02	0.3172	24.02	23.813	24.13	0					10	6	2	0	0	0	0.25987	1	8342	8342		84.916	4.9763	1	401560	+		21564	19509	13943	13999	21880	21880					0.1095744195114321
KRPLKESHAIW	11	Unmodified	_KRPLKESHAIW_					0	0	0			REV__nc|ENSG00000165698|Q96E40-2|SPACA9	REV__nc|ENSG00000165698|Q96E40-2|SPACA9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	682.8970336914062	2	682.893503	1363.77245	0.24372	0.00016644	3.6913	0.0025208	3.9351	0.0026872	682.8958898772258	39.297	0.1429	39.297	39.263	39.406	0					10	8	2	0	0	0	0.69524	1	12797	12797		28.081	5.5018	1	46540	+		21565	16061	13944	14000	21881	21881					0.10511834371095574
KRPLKESHAIW	11	Unmodified	_KRPLKESHAIW_					0	0	0			REV__nc|ENSG00000165698|Q96E40-2|SPACA9	REV__nc|ENSG00000165698|Q96E40-2|SPACA9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	682.8969116210938	2	682.893503	1363.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.805	1	39.805	39.305	40.305	0								0	0	0	0.43542	1	12906	12906		29.17	4.6509	1		+		21566	16061	13944	14000	21882	21882					0.10511834371095574
KRPLKESHAIW	11	Unmodified	_KRPLKESHAIW_					0	0	0			REV__nc|ENSG00000165698|Q96E40-2|SPACA9	REV__nc|ENSG00000165698|Q96E40-2|SPACA9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	682.8956909179688	2	682.893503	1363.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.146	1	40.146	39.646	40.646	0								0	0	0	0.31865	1	12998	12998		49.536	16.786	1		+		21567	16061	13944	14000	21883	21883					0.10511834371095574
KRPLKESHAIW	11	Unmodified	_KRPLKESHAIW_					0	0	0			REV__nc|ENSG00000165698|Q96E40-2|SPACA9	REV__nc|ENSG00000165698|Q96E40-2|SPACA9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	682.8963623046875	2	682.893503	1363.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.49	1	40.49	39.99	40.99	0								0	0	0	0.41946	1	13079	13079		32.751	9.2278	1		+		21568	16061	13944	14000	21884	21884					0.10511834371095574
KRPNMEIKI	9	Unmodified	_KRPNMEIKI_					0	0	0		ENST00000547013.1_1_12:50153049-50155509:+|nuORF	ENST00000547013.1_1_12:50153049-50155509:+|nuORF	ENST00000547013.1_1_12:50153049-50155509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8352661132812	2	564.831526	1127.6485	3.4705	0.0019602	2.1343	0.0012055	5.6048	0.0031658	564.8332013996823	43.481	0.18716	43.481	43.404	43.591	0					11	6	3	0	0	0	0.43488	1	17421	17421		24.519	0	1	74520			21569	10585	13945	14001	21885	21885					0.08978040279248489
KRPQGGPAELL	11	Unmodified	_KRPQGGPAELL_					0	0	0			REV__nc|ENSG00000169635|Q96JB3-2|HIC2	REV__nc|ENSG00000169635|Q96JB3-2|HIC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.22772216796875	3	389.227779	1164.66151	-0.1521	-5.92E-05	-0.5928	-0.00023073	-0.74489	-0.00028993	389.2275635753634	22.742	0.18863	22.742	22.694	22.883	0					7	4	2	0	0	0	0.69004	1	6881	6881		28.577	4.3449	1	86078	+		21570	16325	13946	14002	21886	21886					0.08576194662987291
KRPRVKLSD	9	Unmodified	_KRPRVKLSD_					0	0	0		DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8406982421875	2	549.840739	1097.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.247	1	17.247	16.747	17.747	0								0	0	0	0.3428	1	4940	4940		26.693	2.1737	1				21571	750	13947	14003	21887	21887					0.12199918245482877
KRPSCGSW	8	Unmodified	_KRPSCGSW_					0	0	0			REV__ENST00000252506.10_1_9:92221055-92221238:+|nuORF	REV__ENST00000252506.10_1_9:92221055-92221238:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.724365234375	2	460.723987	919.433421	-0.44221	-0.00020374	1.4043	0.00064701	0.96213	0.00044328	460.7245730814475	14.555	0.17499	14.555	14.477	14.652	0					13	7	3	0	0	0	0.63077	1	3003	3003		44.117	13.613	1	420600	+		21572	17969	13948	14004	21888	21888					-0.02951881465696715
KRPSSLHK	8	Unmodified	_KRPSSLHK_					0	0	0		VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant;VWA8|p.G1575Efs*53|1|0.25|ENSG00000102763|chr13:41611729-41611729|C/-|frameshift_variant;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7875671386719	2	476.787976	951.561398	0.79723	0.00038011	-0.70697	-0.00033708	0.09026	4.3035E-05	476.7877130787255	15.154	0.47009	15.154	14.894	15.364	0					15	9	2	0	0	0	0.59773	1	3943	3943		49.442	1.7842	1	981720			21573	2188	13949	14005	21889	21889					0.08368002119846096
KRQICVRQ	8	Carbamidomethyl (C)	_KRQIC(Carbamidomethyl (C))VRQ_	KRQIC(1)VRQ		KRQIC(50)VRQ		0	1	0			REV__ENSG00000104884|ENST00000391945|ERCC2	REV__ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.3097534179688	2	544.311292	1086.60803	1.1721	0.00063797	1.5138	0.00082399	2.6859	0.001462	544.308816572876	26.905	0.16799	26.905	26.811	26.979	0					11	5	3	0	0	0	0.59411	1	8226	8226		50.025	7.6284	1	141800	+		21574	13742	13950	14006	21890	21890	522				0.0681911867945928
KRQTSILIQK	10	Unmodified	_KRQTSILIQK_					0	0	0		ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.8861694335938	2	607.882604	1213.75066	2.9406	0.0017875	2.8342	0.0017229	5.7748	0.0035104	607.8843902509212	17.555	0.11647	17.555	17.498	17.615	0					6	2	3	0	0	0	0.31894	1	5102	5102		52.937	0	1	401610			21575	5673	13951	14007	21891	21891					0.15233029622527283
KRQWTTSK	8	Unmodified	_KRQWTTSK_					0	0	0			REV__ENST00000473587.1_1_3:39172463-39175709:+|nuORF	REV__ENST00000473587.1_1_3:39172463-39175709:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7889404296875	2	517.790715	1033.56688	0.079809	4.1325E-05	0.38549	0.0001996	0.4653	0.00024093	517.7899670442707	16.65	0.074615	16.65	16.606	16.681	0					7	3	3	0	0	0	0.63854	1	4033	4033		40.778	5.1599	1	60483	+		21576	19507	13952	14008	21892	21892					0.051436809116466975
KRRAVPCWR	9	Unmodified	_KRRAVPCWR_					0	0	0			REV__ENST00000534280.5_1_19:50183451-50183795:+|nuORF	REV__ENST00000534280.5_1_19:50183451-50183795:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.2256164550781	3	391.225826	1170.65565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.886	1	44.886	44.386	45.386	0								0	0	0	0.37517	1	17981	17981		18.262	0	1		+		21577	20090	13953	14009	21893	21893					0.07714817670330376
KRRGRLGQ	8	Unmodified	_KRRGRLGQ_					0	0	0			REV__ENST00000514738.5_1_5:31193947-31267460:+|nuORF	REV__ENST00000514738.5_1_5:31193947-31267460:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.8056640625	2	485.804491	969.59443	-0.021771	-1.0577E-05	2.7528	0.0013373	2.731	0.0013267	485.80584645681415	24.167	0.095987	24.167	24.129	24.225	0					6	3	2	0	0	0	0.60719	1	7105	7105		47.916	1.9434	1	110360	+		21578	19906	13954	14010	21894	21894					0.10841628962577943
KRRIRAKQ	8	Unmodified	_KRRIRAKQ_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.3507690429688	2	528.349066	1054.68358	1.2533	0.0006622	2.7343	0.0014447	3.9877	0.0021069	528.3503605869835	16.127	0.096647	16.127	16.069	16.166	0					5	3	2	0	0	0	0.44433	1	3766	3766		65.803	14.468	1	71311			21579	6041	13955	14011	21895	21895					0.15842463922081151
KRRKALPA	8	Unmodified	_KRRKALPA_					0	0	0			REV__nc|ENSG00000162302|O75676-2|RPS6KA4	REV__nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.3151550292969	2	470.314161	938.613768	2.5311	0.0011904	-0.077488	-3.6443E-05	2.4536	0.001154	470.3140753943146	43.334	0.417	43.334	43.134	43.551	0					30	15	3	0	0	0	0.8006	1	17337	17337		20.482	5.8177	1	250370	+		21580	15806	13956	14012	21896	21896					0.14200585253456666
KRRKQAKE	8	Unmodified	_KRRKQAKE_					0	0	0			REV__ENST00000335090.6_1_19:52803665-52819104:+|nuORF	REV__ENST00000335090.6_1_19:52803665-52819104:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.3268432617188	2	522.325257	1042.63596	1.0706	0.0005592	3.9192	0.0020471	4.9897	0.0026063	522.3271480453891	31.989	0.1652	31.989	31.923	32.088	0					5	4	2	0	0	0	0.63077	1	11087	11087		44.117	3.3386	1	85352	+		21581	17401	13957	14013	21897	21897					0.11634764931227437
KRRLPNQQ	8	Unmodified	_KRRLPNQQ_					0	0	0			REV__ENST00000593093.5_1_19:1273631-1273697:+|nuORF	REV__ENST00000593093.5_1_19:1273631-1273697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3106689453125	2	520.309606	1038.60466	1.6801	0.00087416	0.49242	0.00025621	2.1725	0.0011304	520.309918906733	37.39	1.2156	37.39	36.93	38.145	0					60	38	2	0	0	0	0.72381	1	14664	14664		30.504	4.4403	1	323820	+		21582	20544	13958	14014	21898	21898					0.08690191897130717
KRRQIAKR	8	Unmodified	_KRRQIAKR_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3507080078125	2	528.349066	1054.68358	3.4659	0.0018312	-0.24541	-0.00012966	3.2205	0.0017016	528.3488543444731	16.325	0.16711	16.325	16.217	16.384	0					8	3	3	0	0	0	0.41952	1	4511	4511		68.485	8.1907	1	965560	+		21583	16572	13959	14015	21899	21899					0.15842463922081151
KRRRLMES	8	Unmodified	_KRRRLMES_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.311279296875	2	538.311292	1074.60803	1.3649	0.00073475	-0.95963	-0.00051658	0.40528	0.00021817	538.3104555945125	29.776	0.16791	29.776	29.667	29.835	0					5	3	2	0	0	0	0.77246	1	11075	11075		24.203	0.68005	1	56255			21584	6631	13960	14016	21900	21900					0.0737111867947533
KRSEFGAPIK	10	Unmodified	_KRSEFGAPIK_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.8282470703125	2	566.827298	1131.64004	0.63389	0.00035931	1.3632	0.00077269	1.9971	0.001132	566.8280858571585	30.42	0.11536	30.42	30.342	30.458	0					4	2	2	0	0	0	0.5155	1	11264	11264		43.651	4.8972	1	64983			21585	5482	13961	14017	21901	21901					0.07948809634262943
KRSGRSNVL	9	Unmodified	_KRSGRSNVL_					0	0	0		ENST00000487138.5_1_2:95944180-95944300:+|nuORF	ENST00000487138.5_1_2:95944180-95944300:+|nuORF	ENST00000487138.5_1_2:95944180-95944300:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.80303955078125	2	508.801614	1015.58868	1.3293	0.00067634	1.1043	0.00056189	2.4336	0.0012382	508.80224789582303	41.485	0.13033	41.485	41.4	41.53	0					8	3	3	0	0	0	0.13267	1	16513	16513		71.877	7.6702	1	312490			21586	10034	13962	14018	21902	21902					0.08150485660235063
KRSIPLESC	9	Unmodified	_KRSIPLESC_					0	0	0		ENSG00000169047|ENST00000305123|IRS1;IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant;IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7781372070312	2	516.778959	1031.54336	1.1731	0.00060623	-3.4604	-0.0017883	-2.2873	-0.001182	516.7769814961381	24.198	0.23576	24.198	24.093	24.329	0					6	5	2	0	0	0	0.24095	1	7518	7518		56.721	7.2795	1	125130			21587	6143	13963	14019	21903	21903					0.02885499082822207
KRSISELVA	9	Unmodified	_KRSISELVA_					0	0	0		ENST00000560671.5_1_15:34440831-34455877:-|nuORF;ENST00000540594.5_1_15:34439399-34502250:-|nuORF;ENSG00000134152|ENST00000256544|KATNBL1	ENST00000560671.5_1_15:34440831-34455877:-|nuORF	ENST00000560671.5_1_15:34440831-34455877:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.8006591796875	2	501.800749	1001.58694	-0.087553	-4.3934E-05	0.083109	4.1704E-05	-0.0044445	-2.2303E-06	501.800885179858	21.562	0.23266	21.562	21.42	21.653	0					9	4	3	0	0	0	0.17854	1	6876	6876		64.207	2.0999	1	1212100			21588	3894	13964	14020	21904	21904					0.08621431851599937
KRSMLLAQ	8	Oxidation (M)	_KRSM(Oxidation (M))LLAQ_		KRSM(1)LLAQ		KRSM(48)LLAQ	0	0	1			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.77606201171875	2	481.776219	961.537886	0.043287	2.0855E-05	-3.4991E-05	-1.6858E-08	0.043252	2.0838E-05	481.77624225744074	17.175	0.1384	17.175	17.109	17.248	0					7	4	2	0	0	0	0.6088	1	4043	4043		47.657	7.0847	1	85398	+		21589	16232	13965	14021	21905	21905		622			0.055578202910282926
KRSPRKCAPG	10	Unmodified	_KRSPRKCAPG_					0	0	0		ENST00000393913.7_1_2:75749606-75787936:-|nuORF;ENST00000410113.5_1_2:75753312-75787936:-|nuORF;ENST00000485891.1_1_2:75745306-75787936:-|nuORF	ENST00000393913.7_1_2:75749606-75787936:-|nuORF	ENST00000393913.7_1_2:75749606-75787936:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.2082214355469	3	367.209953	1098.60803	-2.0766	-0.00076256	-3.7055	-0.0013607	-5.7821	-0.0021233	367.2085993550335	22.33	0.27733	22.33	22.099	22.376	0					11	6	2	0	0	0	0.69166	1	6642	6642		21.686	0	1	162020			21590	9168	13966	14022	21906	21906					0.06267118679488703
KRSRAVKQ	8	Unmodified	_KRSRAVKQ_					0	0	0			REV__ENST00000490239.5_1_9:35616323-35616377:-|nuORF	REV__ENST00000490239.5_1_9:35616323-35616377:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.80780029296875	2	486.8067	971.598846	2.5391	0.001236	-0.13195	-6.4232E-05	2.4071	0.0011718	486.8066355580229	20.768	0.21695	20.768	20.658	20.875	0					11	4	4	0	0	0	0.35045	1	6659	6659		76.774	2.5191	1	2972600	+		21591	19708	13967	14023	21907	21907					0.11191093385468776
KRSSHHLSLL	10	Unmodified	_KRSSHHLSLL_					0	0	0		ENST00000591166.1_1_17:42259005-42263988:-|nuORF;ENST00000585457.5_1_17:42259005-42264009:-|nuORF	ENST00000591166.1_1_17:42259005-42263988:-|nuORF	ENST00000591166.1_1_17:42259005-42263988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.8440551757812	2	589.343646	1176.67274	0.14207	8.3728E-05	-0.92806	-0.00054695	-0.78599	-0.00046322	589.3429118604408	53.053	0.84975	53.053	52.742	53.591	0					92	53	3	0	0	0	0.72365	1	18747	18747		18.262	0.79408	1	128280			21592	10896	13968	14024	21908	21908					0.09147016757151505
KRSSHRQA	8	Unmodified	_KRSSHRQA_					0	0	0		CHD1|p.R233H|1|0.29|ENSG00000153922|chr5:98900972-98900972|C/T|missense_variant	CHD1|p.R233H|1|0.29|ENSG00000153922|chr5:98900972-98900972|C/T|missense_variant	CHD1|p.R233H|1|0.29|ENSG00000153922|chr5:98900972-98900972|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.27032470703125	2	485.270481	968.52641	0.65542	0.00031806	-0.6435	-0.00031227	0.011925	5.7871E-06	485.2701226709024	11.959	1.147	11.959	11.795	12.942	0					73	29	3	0	0	0	0.67394	1	2714	2714		37.159	1.5408	1	6030200			21593	504	13969	14025	21909	21909					0.04088759311900958
KRSSSIAST	9	Unmodified	_KRSSSIAST_					0	0	0		nc|ENSG00000135835|Q5VZ46-2|KIAA1614;ENSG00000135835|ENST00000367588|KIAA1614	nc|ENSG00000135835|Q5VZ46-2|KIAA1614	nc|ENSG00000135835|Q5VZ46-2|KIAA1614	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7591552734375	2	468.759081	935.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.655	1	13.655	13.155	14.155	0								0	0	0	0.34845	1	2775	2775		25.574	0	1				21594	4026	13970	14026	21910	21910					0.03327695403766029
KRSSTLSTPL	10	Unmodified	_KRSSTLSTPL_					0	0	0		GFI1|p.H330P|1|0.13|ENSG00000162676|chr1:92478689-92478689|T/G|missense_variant	GFI1|p.H330P|1|0.13|ENSG00000162676|chr1:92478689-92478689|T/G|missense_variant	GFI1|p.H330P|1|0.13|ENSG00000162676|chr1:92478689-92478689|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3180541992188	2	545.316763	1088.61897	1.9221	0.0010482	0.27062	0.00014757	2.1928	0.0011957	545.316743068158	51.257	1.015	51.257	51.026	52.041	0					124	62	3	0	0	0	0.72769	1	19187	19187		17.468	0.10304	1	158310			21595	11153	13971	14027	21911	21911					0.07820799534783873
KRSVTSTQ	8	Unmodified	_KRSVTSTQ_					0	0	0			REV__ENST00000492897.3_1_17:46669706-46679621:+|nuORF	REV__ENST00000492897.3_1_17:46669706-46679621:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.75360107421875	2	453.753798	905.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.469	1	13.469	12.969	13.969	0								0	0	0	1.7419	1	3133	3133		82.241	0	1		+		21596	19152	13972	14028	21912	21912					0.03651712749331182
KRSYKKEL	8	Unmodified	_KRSYKKEL_					0	0	0			REV__ENST00000552090.1_1_12:49167835-49170266:-|nuORF	REV__ENST00000552090.1_1_12:49167835-49170266:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.231689453125	2	526.316566	1050.61858	0.6206	0.00032663	0.33385	0.00017571	0.95446	0.00050235	526.3167423252015	17.17	0.19818	17.17	17.099	17.297	0					10	6	3	0	0	0	0.78499	1	4024	4024		26.693	6.6961	1	270990	+		21597	16557	13973	14029	21913	21913					0.09529424605557324
KRTEGNKSK	9	Unmodified	_KRTEGNKSK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.86944580078125	3	349.868362	1046.58326	0.51077	0.0001787	2.8107	0.00098337	3.3214	0.0011621	349.8692660313726	24.982	0.16536	24.982	24.924	25.089	0					5	3	2	0	0	0	0.48623	1	8821	8821		33.922	7.2287	1	140850			21598	5668	13974	14030	21914	21914					0.06182762077764892
KRTHRINL	8	Unmodified	_KRTHRINL_					0	0	0		L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|9|3|sense	L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|9|3|sense	L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|9|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.5498046875	3	346.549075	1036.6254	0.18919	6.5564E-05	2.185	0.0007572	2.3742	0.00082277	346.54990743308105	20.555	0.1863	20.555	20.483	20.669	0					8	5	2	0	0	0	0.78978	1	5510	5510		21.96	1.013	1	250930			21599	11275	13975	14031	21915	21915					0.10854782276783226
KRTKAGIY	8	Unmodified	_KRTKAGIY_					0	0	0		ENST00000561440.1_1_15:83207600-83207885:-|nuORF	ENST00000561440.1_1_15:83207600-83207885:-|nuORF	ENST00000561440.1_1_15:83207600-83207885:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7849426269531	2	468.784902	935.55525	0.025703	1.2049E-05	-0.094735	-4.441E-05	-0.069032	-3.2361E-05	468.78491023968144	20.56	0.15729	20.56	20.49	20.648	0					9	4	3	0	0	0	0.75243	1	5519	5519		26.796	1.3459	1	163110			21600	10710	13976	14032	21916	21916					0.08489483888320137
KRTTDKLQ	8	Unmodified	_KRTTDKLQ_					0	0	0		ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2930908203125	2	495.290548	988.566543	3.4234	0.0016956	1.4202	0.00070341	4.8436	0.002399	495.2913881078098	20.671	0.1443	20.671	20.597	20.741	0					7	4	2	0	0	0	0.53424	1	5821	5821		56.721	5.3856	1	113690			21601	9740	13977	14033	21917	21917					0.07180261191797399
KRTTGQAG	8	Unmodified	_KRTTGQAG_					0	0	0		RECQL4|p.H81Ifs*2|1|0.12|ENSG00000160957|chr8:144517167-144517167|C/-|frameshift_variant;ENST00000534270.1_1_8:145742403-145742869:-|nuORF;ENST00000534538.1_2_8:145741967-145742869:-|nuORF;RECQL4|p.Q880Sfs*4|1|0.25|ENSG00000160957|chr8:144512965-144512966|-/G|frameshift_variant;ENSG00000160957|ENST00000617875|RECQL4	RECQL4|p.H81Ifs*2|1|0.12|ENSG00000160957|chr8:144517167-144517167|C/-|frameshift_variant	RECQL4|p.H81Ifs*2|1|0.12|ENSG00000160957|chr8:144517167-144517167|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.72967529296875	2	409.727584	817.440614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.695	1	16.695	16.195	17.195	0								0	0	0	1.7419	1	4822	4822		45.952	0	1				21602	5394	13978	14034	21918	21918					0.024591744063855003
KRTTGQAG	8	Unmodified	_KRTTGQAG_					0	0	0		RECQL4|p.H81Ifs*2|1|0.12|ENSG00000160957|chr8:144517167-144517167|C/-|frameshift_variant;ENST00000534270.1_1_8:145742403-145742869:-|nuORF;ENST00000534538.1_2_8:145741967-145742869:-|nuORF;RECQL4|p.Q880Sfs*4|1|0.25|ENSG00000160957|chr8:144512965-144512966|-/G|frameshift_variant;ENSG00000160957|ENST00000617875|RECQL4	RECQL4|p.H81Ifs*2|1|0.12|ENSG00000160957|chr8:144517167-144517167|C/-|frameshift_variant	RECQL4|p.H81Ifs*2|1|0.12|ENSG00000160957|chr8:144517167-144517167|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.7297058105469	2	409.727584	817.440614	0.81334	0.00033325	2.8583	0.0011711	3.6716	0.0015044	409.72858863734126	16.724	0.50701	16.724	16.634	17.141	0					17	10	3	0	0	0	0.49216	1	4683	4683		60.972	5.4677	1	1408700			21603	5394	13978	14034	21919	21919					0.024591744063855003
KRTTKSTVS	9	Unmodified	_KRTTKSTVS_					0	0	0			REV__ADGB|p.S1313Y|1|0.15|ENSG00000118492|chr6:146782095-146782095|C/A|missense_variant	REV__ADGB|p.S1313Y|1|0.15|ENSG00000118492|chr6:146782095-146782095|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2979736328125	2	504.29583	1006.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.31	1	52.31	51.81	52.81	0								0	0	0	0.24724	1	19303	19303		44.117	5.3107	1		+		21604	12085	13979	14035	21920	21920					0.07408243846248297
KRTTKSTVS	9	Unmodified	_KRTTKSTVS_					0	0	0			REV__ADGB|p.S1313Y|1|0.15|ENSG00000118492|chr6:146782095-146782095|C/A|missense_variant	REV__ADGB|p.S1313Y|1|0.15|ENSG00000118492|chr6:146782095-146782095|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2967529296875	2	504.29583	1006.57711	2.9316	0.0014784	0.94508	0.0004766	3.8767	0.001955	504.2964107854567	18.795	1.7917	18.795	18.685	20.477	0					94	36	3	0	0	0	0.41113	1	6086	6086		40.778	0.20554	1	143420000	+		21605	12085	13979	14035	21921	21921					0.07408243846248297
KRTVSCLE	8	Unmodified	_KRTVSCLE_					0	0	0			REV__ENST00000462055.5_1_7:132990739-133002048:+|nuORF	REV__ENST00000462055.5_1_7:132990739-133002048:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2520751953125	2	468.252577	934.490601	0.31023	0.00014527	-1.6297	-0.00076311	-1.3195	-0.00061785	468.2517432298406	14.147	0.09129	14.147	14.104	14.196	0					4	2	2	0	0	0	0.67394	1	3399	3399		37.159	0	1	42921	+		21606	19385	13980	14036	21922	21922					0.02073541020013181
KRVAFSATR	9	Unmodified	_KRVAFSATR_					0	0	0			REV__ENSG00000100347|ENST00000350028|SAMM50	REV__ENSG00000100347|ENST00000350028|SAMM50	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.3064575195312	2	518.306532	1034.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.534	1	17.534	17.034	18.034	0								0	0	0	0.17378	1	5076	5076		54.776	3.4409	1		+		21607	13546	13981	14037	21923	21923					0.08259673665611444
KRVDKNTIVA	10	Unmodified	_KRVDKNTIVA_					0	0	0			REV__ENSG00000104408|ENST00000220849|EIF3E	REV__ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.3467407226562	2	572.345855	1142.67716	1.0869	0.00062208	-0.29926	-0.00017128	0.78763	0.0004508	572.3455545001954	16.29	0.045519	16.29	16.247	16.292	0					4	2	2	0	0	0	0.56063	1	3676	3676		26.693	0	1	56443	+		21608	13725	13982	14038	21924	21924					0.11152481180033647
KRVHAMTY	8	Unmodified	_KRVHAMTY_					0	0	0			REV__ENSG00000198740|ENST00000430262|ZNF652	REV__ENSG00000198740|ENST00000430262|ZNF652	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7715148925781	2	503.268561	1004.52257	0.075986	3.8241E-05	3.4283	0.0017254	3.5043	0.0017636	503.7712396753426	30.491	0.16266	30.491	30.367	30.529	0					6	3	2	0	0	0	0.64144	1	11408	11408		40.573	1.3198	1	170060	+		21609	14085	13983	14039	21925	21925					0.020489534938178622
KRVQLNGPSG	10	Unmodified	_KRVQLNGPSG_					0	0	0			REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL	REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.30224609375	2	528.301447	1054.58834	0.70009	0.00036986	1.8963	0.0010018	2.5964	0.0013717	528.302653890877	15.322	0.21837	15.322	15.162	15.38	0					8	4	2	0	0	0	0.66185	1	4028	4028		26.693	3.6504	1	79531	+		21610	12910	13984	14040	21926	21926					0.06323065940387096
KRVQPAQNH	9	Unmodified	_KRVQPAQNH_					0	0	0		LRRC8C|p.W509Lfs*20|1|0.33|ENSG00000171488|chr1:89714087-89714088|-/C|frameshift_variant;ENSG00000171488|ENST00000370454|LRRC8C	LRRC8C|p.W509Lfs*20|1|0.33|ENSG00000171488|chr1:89714087-89714088|-/C|frameshift_variant	LRRC8C|p.W509Lfs*20|1|0.33|ENSG00000171488|chr1:89714087-89714088|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8683776855469	3	359.868585	1076.58392	-0.065193	-2.3461E-05	-0.79643	-0.00028661	-0.86162	-0.00031007	359.86839326912053	27.365	0.52493	27.365	27.255	27.78	0					23	10	4	0	0	0	0.48389	1	9772	9772		34.173	0.25091	1	1111700			21611	6298	13985	14041	21927	21927					0.0486960151747553
KRVRMCISC	9	Unmodified	_KRVRMCISC_					0	0	0			REV__ENST00000392557.8_1_14:105713416-105713644:-|nuORF	REV__ENST00000392557.8_1_14:105713416-105713644:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2846069335938	2	548.282831	1094.55111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.558	1	21.558	21.058	22.058	0								0	0	0	0.30009	1	6271	6271		27.882	0	1		+		21612	18830	13986	14042	21928	21928					0.007616118071155142
KRYEQLVA	8	Unmodified	_KRYEQLVA_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7873840332031	2	503.787641	1005.56073	1.0181	0.0005129	-0.81166	-0.0004089	0.20642	0.00010399	503.7872194298078	17.592	3.7412	17.592	17.435	21.176	0					130	75	4	0	0	0	0.46905	1	5581	5581		63.306	1.1989	1	2854500	+		21613	16599	13987	14043	21929	21929					0.058171626801254206
KRYKSAAVAA	10	Unmodified	_KRYKSAAVAA_					0	0	0		nc|ENSG00000168671|Q3SY77-2|UGT3A2;ENSG00000168671|ENST00000282507|UGT3A2	nc|ENSG00000168671|Q3SY77-2|UGT3A2	nc|ENSG00000168671|Q3SY77-2|UGT3A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8134155273438	2	532.81419	1063.61383	-1.2835	-0.00068387	-0.023932	-1.2751E-05	-1.3074	-0.00069662	532.8140738478824	43.211	0.1825	43.211	43.119	43.301	0					18	11	2	0	0	0	0.60076	1	14995	14995		34.173	3.8548	1	66202			21614	6108	13988	14044	21930	21930					0.08456540462793782
KRYLEMLLE	9	Unmodified	_KRYLEMLLE_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3471092-3471287:-|nuORF;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.8323364257812	2	597.831191	1193.64783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.811	1	43.811	43.311	44.311	0								0	0	0	0.3428	1	17108	17108		26.693	2.4902	1				21615	6959	13989	14045	21931	21931					0.05875200839568606
KSAASLHSNL	10	Unmodified	_KSAASLHSNL_					0	0	0			REV__nc|ENSG00000180336|A2RUB1-1|MEIOC	REV__nc|ENSG00000180336|A2RUB1-1|MEIOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.18914794921875	3	343.189212	1026.54581	-0.75244	-0.00025823	0.18637	6.3962E-05	-0.56606	-0.00019427	343.1892334106688	17.875	0.13194	17.875	17.792	17.924	0					12	3	4	0	0	0	0.54197	1	4557	4557		45.022	6.2686	1	983510	+		21616	16806	13990	14046	21932	21932					0.033596708121422125
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.287841796875	2	487.287474	972.560395	-0.058105	-2.8314E-05	0.728	0.00035474	0.66989	0.00032643	487.2877125088997	14.257	0.26522	14.257	14.092	14.357	0					22	11	3	0	0	0	0.15558	1	2882	2882		66.962	15.769	1	193750			21617	3715	13991	14047	21933	21933					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.194091796875	3	325.194075	972.560395	0.28855	9.3836E-05	-0.30509	-9.9215E-05	-0.016542	-5.3793E-06	325.19397563819626	14.279	0.1536	14.279	14.157	14.311	0					11	6	2	0	0	0	0.5741	1	2894	2894		25.126	11.672	1	170170			21618	3715	13991	14047	21934	21934					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.28741455078125	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.482	1	14.482	13.982	14.982	0								0	0	0	0.0052769	1	3536	3536		114.89	15.52	1				21619	3715	13991	14047	21935	21935					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.1940612792969	3	325.194075	972.560395	0.53296	0.00017332	-0.43415	-0.00014118	0.09881	3.2132E-05	325.19392143814326	14.578	0.32731	14.578	14.327	14.655	0					21	8	3	0	0	0	0.30841	1	3550	3550		56.632	17.879	1	898000			21620	3715	13991	14047	21936	21936					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.28759765625	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.25	1	14.25	13.75	14.75	0								0	0	0	0.084509	1	3053	3053		76.17	4.2922	1				21621	3715	13991	14047	21937	21937					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.28753662109375	2	487.287474	972.560395	-0.08315	-4.0518E-05	0.27574	0.00013436	0.19259	9.3846E-05	487.28763261545913	14.557	0.38174	14.557	14.332	14.714	0					19	8	3	0	0	0	0.30257	1	3730	3730		50.034	4.0613	1	499180			21622	3715	13991	14047	21938	21938					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.194091796875	3	325.194075	972.560395	0.55706	0.00018115	-0.5595	-0.00018195	-0.0024457	-7.9532E-07	325.1938953437248	14.576	0.47932	14.576	14.301	14.78	0					28	10	4	0	0	0	0.44949	1	3753	3753		37.6	4.8494	1	1170400			21623	3715	13991	14047	21939	21939					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.28729248046875	2	487.287474	972.560395	0.43668	0.00021279	-0.065867	-3.2096E-05	0.37081	0.00018069	487.28748393318847	14.29	0.22583	14.29	14.173	14.399	0					13	9	2	0	0	0	0.21419	1	2985	2985		59.931	6.5793	1	118870			21624	3715	13991	14047	21940	21940					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2878723144531	2	487.287474	972.560395	-0.23095	-0.00011254	0.43355	0.00021126	0.2026	9.8724E-05	487.2876415764755	14.314	0.17837	14.314	14.205	14.383	0					14	7	2	0	0	0	0.30841	1	2978	2978		49.536	13.918	1	130260			21625	3715	13991	14047	21941	21941					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2873229980469	2	487.287474	972.560395	-0.53743	-0.00026188	0.31359	0.00015281	-0.22384	-0.00010908	487.28763395129636	14.517	0.42052	14.517	14.257	14.677	0					21	8	4	0	0	0	0.037712	1	3570	3570		101.46	29.582	1	1224800			21626	3715	13991	14047	21942	21942					0.0730174296027144
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2869873046875	2	487.287474	972.560395	0.81063	0.00039501	-1.624	-0.00079137	-0.81341	-0.00039636	487.28692511386527	14.5	0.52276	14.5	14.188	14.711	0					25	10	4	0	0	0	0.037712	1	3583	3583		101.46	13.763	1	1235500			21627	3715	13991	14047	21943	21943					0.0730174296027144
KSAEKALGK	9	Unmodified	_KSAEKALGK_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2823791503906	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.008	1	13.008	12.508	13.508	0								0	0	0	0.19847	1	2913	2913		51.193	10.415	1				21628	1110	13992	14048	21944	21944					0.08177760305852644
KSAELKQQK	9	Unmodified	_KSAELKQQK_					0	0	0			REV__ENSG00000100665|ENST00000557004|SERPINA4	REV__ENSG00000100665|ENST00000557004|SERPINA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3114624023438	2	530.31148	1058.60841	0.11579	6.1404E-05	-0.091544	-4.8547E-05	0.024244	1.2857E-05	530.3114354228796	12.568	0.15797	12.568	12.528	12.686	0					9	5	3	0	0	0	0.063171	1	2682	2682		90.601	4.739	1	232610	+		21629	13570	13993	14049	21945	21945					0.08144816880326289
KSAELKQQK	9	Unmodified	_KSAELKQQK_					0	0	0			REV__ENSG00000100665|ENST00000557004|SERPINA4	REV__ENSG00000100665|ENST00000557004|SERPINA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.3120727539062	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.623	1	12.623	12.123	13.123	0								0	0	0	0.20989	1	2886	2886		49.536	4.5138	1		+		21630	13570	13993	14049	21946	21946					0.08144816880326289
KSAFLCGVMK	10	Carbamidomethyl (C)	_KSAFLC(Carbamidomethyl (C))GVMK_	KSAFLC(1)GVMK		KSAFLC(59)GVMK		0	1	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7991943359375	2	570.798837	1139.58312	1.6274	0.0009289	-1.4319	-0.00081733	0.19546	0.00011157	570.7984711997647	31.658	0.31285	31.658	31.505	31.818	0					15	6	3	0	0	0	0.3783	1	11872	11872		58.63	15.765	1	680150			21631	3449	13994	14050	21947	21947	143				0.018913027618964406
KSAIKKGEF	9	Unmodified	_KSAIKKGEF_					0	0	0			REV__ENST00000302472.3_1_5:40680251-40680356:+|nuORF	REV__ENST00000302472.3_1_5:40680251-40680356:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.24	1	54.24	53.74	54.74	0								0	0	0	0.40021	1	15931	15931		7.8045	0	1		+		21632	18213	13995	14051	21948	21948					0.07810333339944009
KSAKKQLAGT	10	Unmodified	_KSAKKQLAGT_					0	0	0			REV__FAM71B|p.L538*|2|0.27|ENSG00000170613|chr5:157162652-157162652|A/-|frameshift_variant	REV__FAM71B|p.L538*|2|0.27|ENSG00000170613|chr5:157162652-157162652|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.314697265625	2	516.314023	1030.61349	0.31197	0.00016107	0.25095	0.00012957	0.56292	0.00029064	516.3140221516279	55.575	0.26152	55.575	55.482	55.743	0					30	16	3	0	0	0	0.72229	1	19226	19226		13.454	3.1888	1	164990	+		21633	16370	13996	14052	21949	21949					0.09941120742928433
KSAKTATAGPG	11	Unmodified	_KSAKTATAGPG_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.77459716796875	2	494.774731	987.534909	-0.75663	-0.00037436	0.63063	0.00031202	-0.126	-6.2341E-05	494.77509544944223	11.503	0.28274	11.503	11.26	11.542	0					22	9	3	0	0	0	0.27467	1	2312	2312		65.465	12.114	1	1170500			21634	3733	13997	14053	21950	21950					0.040642684378553895
KSAMWGSPRP	10	Oxidation (M)	_KSAM(Oxidation (M))WGSPRP_		KSAM(1)WGSPRP		KSAM(85)WGSPRP	0	0	1			REV__ENST00000496953.1_1_3:60676058-60676130:-|nuORF	REV__ENST00000496953.1_1_3:60676058-60676130:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7841186523438	2	566.782033	1131.54951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.601	1	13.601	13.101	14.101	0								0	0	0	0.074065	1	3348	3348		85.161	21.627	1		+		21635	19779	13998	14054	21951	21951		721			-0.010999826856505024
KSANRTPI	8	Unmodified	_KSANRTPI_					0	0	0			REV__ENSG00000188694|ENST00000340345|KRTAP24-1	REV__ENSG00000188694|ENST00000340345|KRTAP24-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.758544921875	2	443.758884	885.503215	-0.48921	-0.00021709	0.98196	0.00043575	0.49275	0.00021866	443.75939759027426	26.51	0.42093	26.51	26.25	26.671	0					13	8	2	0	0	0	0.70055	1	9387	9387		33.516	1.5607	1	274670	+		21636	17183	13999	14055	21952	21952					0.05588320474578268
KSAPAPKKGSK	11	Unmodified	_KSAPAPKKGSK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENST00000609585.1_1_1:149399050-149399179:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.83544921875	2	549.835123	1097.65569	1.7119	0.00094128	-0.86597	-0.00047614	0.84596	0.00046514	549.8345810431395	10.564	0.067168	10.564	10.523	10.59	0					7	3	3	0	0	0	6.6028E-05	1	2036	2036		152.69	64.996	1	600040			21637	5257;7505	14000	14056	21953	21953					0.1107709615132535
KSAPATGGVKK	11	Unmodified	_KSAPATGGVKK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.5450439453125	3	348.545108	1042.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.515	1	12.515	12.015	13.015	0								0	0	0	0.31916	1	2680	2680		49.466	10.712	1				21638	6067	14001	14057	21954	21954					0.0938912074293512
KSAPDRMVV	9	Unmodified	_KSAPDRMVV_					0	0	0			REV__ENSG00000122566|ENST00000618183|HNRNPA2B1	REV__ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.77349853515625	2	501.773677	1001.5328	0.69472	0.00034859	-1.0883	-0.0005461	-0.39362	-0.00019751	501.77325853242183	19.575	0.63344	19.575	19.043	19.676	0					60	14	5	0	0	0	0.055856	1	5795	5795		93.195	2.8256	1	12397000	+		21639	14335	14002	14058	21955	21955					0.03209516428398729
KSAVNKVVA	9	Unmodified	_KSAVNKVVA_					0	0	0			REV__AP3B1|p.S141Kfs*3|1|0.56|ENSG00000132842|chr5:78227486-78227487|-/T|frameshift_variant	REV__AP3B1|p.S141Kfs*3|1|0.56|ENSG00000132842|chr5:78227486-78227487|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2845458984375	2	458.284734	914.554916	-0.15627	-7.1615E-05	0.17473	8.0078E-05	0.018465	8.4624E-06	458.2846652070773	11.123	0.079218	11.123	11.071	11.15	0					4	2	2	0	0	0	0.33044	1	2209	2209		47.657	3.5405	1	51241	+		21640	12175	14003	14059	21956	21956					0.09422064168472843
KSAVSALR	8	Unmodified	_KSAVSALR_					0	0	0			REV__PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	REV__PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.25592041015625	2	416.255977	830.497401	1.056	0.00043955	-1.2725	-0.00052967	-0.21651	-9.0125E-05	416.2554524153438	15.69	0.16815	15.69	15.579	15.747	0					6	3	2	0	0	0	0.69548	1	4203	4203		34.173	0	1	558010	+		21641	15580	14004	14060	21957	21957					0.07537221962888907
KSAWRAFK	8	Unmodified	_KSAWRAFK_					0	0	0		ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2840270996094	2	497.285069	992.555585	-0.028245	-1.4046E-05	-1.4833	-0.00073761	-1.5115	-0.00075165	497.2841898015088	39.972	0.34883	39.972	39.863	40.212	0					31	12	4	0	0	0	0.61938	1	15720	15720		45.952	3.5558	1	952340			21642	5107	14005	14061	21958	21958					0.059009036081761224
KSAYEQFI	8	Unmodified	_KSAYEQFI_					0	0	0		COG3|p.C697Y|1|0.26|ENSG00000136152|chr13:45519030-45519030|G/A|missense_variant	COG3|p.C697Y|1|0.26|ENSG00000136152|chr13:45519030-45519030|G/A|missense_variant	COG3|p.C697Y|1|0.26|ENSG00000136152|chr13:45519030-45519030|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2533874511719	2	493.2531	984.491647	-0.74463	-0.00036729	0.6928	0.00034172	-0.051834	-2.5567E-05	493.2535182806941	11.952	0.30063	11.952	11.756	12.057	0					13	9	2	0	0	0	0.67394	1	2569	2569		37.159	0	1	425130			21643	588	14006	14062	21959	21959					-0.0012192133942789951
KSCDAAAAVAK	11	Carbamidomethyl (C)	_KSC(Carbamidomethyl (C))DAAAAVAK_	KSC(1)DAAAAVAK		KSC(70)DAAAAVAK		0	1	0		CACUL1|p.K186Rfs*2|1|0.24|ENSG00000151893|chr10:118729335-118729335|T/-|frameshift_variant;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	CACUL1|p.K186Rfs*2|1|0.24|ENSG00000151893|chr10:118729335-118729335|T/-|frameshift_variant	CACUL1|p.K186Rfs*2|1|0.24|ENSG00000151893|chr10:118729335-118729335|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2797241210938	2	546.279323	1090.54409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.212	1	16.212	15.712	16.712	0								0	0	0	0.13297	1	4588	4588		70.399	22.741	1				21644	353	14007	14063	21960	21960	13				0.0024429373186194425
KSCFPESLK	9	Unmodified	_KSCFPESLK_					0	0	0		ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7698974609375	2	519.76806	1037.52157	1.4038	0.00072966	1.9469	0.0010119	3.3507	0.0017416	519.7689695700799	22.619	0.18139	22.619	22.516	22.698	0					7	4	2	0	0	0	0.27123	1	7383	7383		53.089	7.137	1	349280			21645	7665	14008	14064	21961	21961					0.004306943342498926
KSDHKYRR	8	Unmodified	_KSDHKYRR_					0	0	0		ENST00000470889.5_1_3:138341046-138341142:+|nuORF	ENST00000470889.5_1_3:138341046-138341142:+|nuORF	ENST00000470889.5_1_3:138341046-138341142:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.8685302734375	3	363.868585	1088.58392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.581	1	13.581	13.081	14.081	0								0	0	0	1.7419	1	3122	3122		12.959	0.75233	1				21646	9845	14009	14065	21962	21962					0.043176015174594795
KSDHPGISI	9	Unmodified	_KSDHPGISI_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57094898-57095944:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2560119628906	2	477.256174	952.497795	-0.34386	-0.00016411	1.7114	0.00081677	1.3675	0.00065266	477.2566402476745	27.415	0.21626	27.415	27.333	27.549	0					10	5	3	0	0	0	0.21263	1	8959	8959		60.118	3.3972	1	149960			21647	4863	14010	14066	21963	21963					0.019645968920940504
KSDKASYDT	9	Unmodified	_KSDKASYDT_					0	0	0			REV__ENST00000443950.6_1_10:43881425-43881470:-|nuORF	REV__ENST00000443950.6_1_10:43881425-43881470:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.74102783203125	2	507.740554	1013.46655	0.17144	8.7048E-05	0.80393	0.00040819	0.97537	0.00049524	507.74083756254424	21.734	0.16684	21.734	21.675	21.842	0					6	3	2	0	0	0	0.25716	1	7265	7265		54.776	1.6874	1	146820	+		21648	19264	14011	14067	21964	21964					-0.0396402093266488
KSDLKTQK	8	Unmodified	_KSDLKTQK_					0	0	0		ENST00000415694.1_1_9:109932192-109932378:-|nuORF	ENST00000415694.1_1_9:109932192-109932378:-|nuORF	ENST00000415694.1_1_9:109932192-109932378:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2792053222656	2	474.279649	946.544745	0.60876	0.00028872	-1.3027	-0.00061784	-0.69392	-0.00032911	474.2791681359458	11.957	5.5556	11.957	11.762	17.318	0					339	121	5	0	0	0	0.3049	2	3951	3951;4137		82.241	4.9229	1	515490000			21649	9349	14012	14068	21965;21966	21965					0.06933456443221075
KSDLKTQK	8	Unmodified	_KSDLKTQK_					0	0	0		ENST00000415694.1_1_9:109932192-109932378:-|nuORF	ENST00000415694.1_1_9:109932192-109932378:-|nuORF	ENST00000415694.1_1_9:109932192-109932378:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2793273925781	2	474.279649	946.544745	0.69788	0.00033099	-1.4851	-0.00070436	-0.78723	-0.00037337	474.27903366938347	11.893	3.6471	11.893	11.767	15.414	0					202	83	5	0	0	0	0.43813	1	2881	2881		66.429	0.6261	1	247480000			21650	9349	14012	14068	21967	21967					0.06933456443221075
KSDLWSLGITA	11	Unmodified	_KSDLWSLGITA_					0	0	0		TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant;TNIK|p.E1253Kfs*13|1|0.04|ENSG00000154310|chr3:171066678-171066678|C/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.K261Nfs*11|1|0.25|ENSG00000154310|chr3:171167261-171167261|T/-|frameshift_variant;TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	595.8265991210938	2	595.824421	1189.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.306	1	35.306	34.806	35.806	0								0	0	0	0.43542	1	11940	11940		29.17	2.1227	1				21651	5084	14013	14069	21968	21968					0.04705666331960856
KSDPVDPDK	9	Unmodified	_KSDPVDPDK_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.75091552734375	2	500.750921	999.48729	0.91913	0.00046025	-0.75993	-0.00038054	0.15919	7.9716E-05	500.7505296750793	14.412	0.19117	14.412	14.317	14.508	0					9	4	3	0	0	0	0.13726	1	3744	3744		70.816	6.6089	1	1132100			21652	1373	14014	14070	21969	21969					-0.012474305529963203
KSDRGGGAPR	10	Unmodified	_KSDRGGGAPR_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.76873779296875	2	500.767771	999.52099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.413	1	14.413	13.913	14.913	0								0	0	0	0.055528	1	3505	3505		68.626	9.8438	1				21653	4670	14015	14071	21970	21970					0.02121035729430787
KSDRILYI	8	Unmodified	_KSDRILYI_					0	0	0		ENST00000441359.1_2_7:112757550-112758579:-|nuORF	ENST00000441359.1_2_7:112757550-112758579:-|nuORF	ENST00000441359.1_2_7:112757550-112758579:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.337	1	35.337	34.837	35.837	0								0	0	0	1.7419	1	11583	11583		17.365	0	1				21654	9577	14016	14072	21971	21971					0.0781033333993264
KSEAASVKK	9	Unmodified	_KSEAASVKK_					0	0	0		nc|ENSG00000171174|Q9H477-2|RBKS	nc|ENSG00000171174|Q9H477-2|RBKS	nc|ENSG00000171174|Q9H477-2|RBKS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.279296875	2	474.279649	946.544745	2.36	0.0011193	-2.5528	-0.0012107	-0.19278	-9.1433E-05	474.27881268743926	11.916	2.5814	11.916	11.76	14.341	0					176	62	6	0	0	0	0.055856	1	2692	2692		93.195	1.9302	1	259270000			21655	11645	14017	14073	21972	21972					0.06933456443232444
KSEINQQIS	9	Unmodified	_KSEINQQIS_					0	0	0			REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7779541015625	2	523.77747	1045.54039	1.1201	0.00058667	0.08095	4.24E-05	1.201	0.00062907	523.777378225958	31.572	0.1706	31.572	31.475	31.645	0					6	4	2	0	0	0	0.35021	1	10889	10889		45.972	0.95004	1	118240	+		21656	22114	14018	14074	21973	21973					0.019439472296880922
KSEKKKRRRGQ	11	Unmodified	_KSEKKKRRRGQ_					0	0	0		KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.62451171875	3	467.623414	1399.84841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.463	1	13.463	12.963	13.963	0								0	0	0	0.45344	1	3131	3131		25.126	4.811	1				21657	11259	14019	14075	21974	21974					0.16448231271215263
KSEKLFKQ	8	Unmodified	_KSEKLFKQ_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2980651855469	2	504.297842	1006.58113	-0.057442	-2.8968E-05	0.18117	9.1362E-05	0.12373	6.2394E-05	504.2980919134503	17.419	0.085798	17.419	17.374	17.46	0					4	2	2	0	0	0	0.61925	1	4920	4920		45.972	0.020292	1	193450	+		21658	22067	14020	14076	21975	21975					0.07810333339955378
KSELAKTK	8	Unmodified	_KSELAKTK_					0	0	0			REV__ENST00000589950.1_1_17:43228245-43238834:-|nuORF	REV__ENST00000589950.1_1_17:43228245-43238834:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7763977050781	2	452.776742	903.538931	-1.1954	-0.00054123	0.81587	0.00036941	-0.3795	-0.00017183	452.7767916191579	14.532	0.075757	14.532	14.486	14.561	0					5	3	2	0	0	0	0.53424	1	3166	3166		56.721	1.2168	1	61812	+		21659	20515	14021	14077	21976	21976					0.08330357931572507
KSELAKTKK	9	Unmodified	_KSELAKTKK_					0	0	0			REV__ENST00000589950.1_1_17:43228245-43238834:-|nuORF	REV__ENST00000589950.1_1_17:43228245-43238834:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8244018554688	2	516.824224	1031.63389	0.040677	2.1023E-05	0.46914	0.00024246	0.50982	0.00026348	516.8244017567434	13.583	0.11341	13.583	13.511	13.624	0					8	3	3	0	0	0	0.34452	1	3127	3127		46.457	5.0302	1	405550	+		21660	20515	14022	14078	21977	21977					0.1193429140275839
KSELPMELK	9	Unmodified	_KSELPMELK_					0	0	0			REV__ENSG00000132952|ENST00000255304|USPL1	REV__ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.79443359375	2	537.796817	1073.57908	1.4221	0.0007648	2.8144	0.0015136	4.2365	0.0022784	537.7978103224401	15.551	0.1155	15.551	15.517	15.633	0					6	4	2	0	0	0	0.35021	1	3430	3430		45.972	1.8554	1	141380	+		21661	14686	14023	14079	21978	21978					0.04523536539818451
KSEMGRAK	8	Unmodified	_KSEMGRAK_					0	0	0			REV__nc|ENSG00000012779|P09917-5|ALOX5	REV__nc|ENSG00000012779|P09917-5|ALOX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7467956542969	2	453.744919	905.475285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.387	1	27.387	26.887	27.887	0								0	0	0	1.7419	1	8432	8432		33.516	3.0119	1		+		21662	12912	14024	14080	21979	21979					0.01876674222830843
KSEPSLKRP	9	Unmodified	_KSEPSLKRP_					0	0	0			REV__ENST00000417689.5_1_16:66968938-66969016:+|nuORF	REV__ENST00000417689.5_1_16:66968938-66969016:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.3065185546875	2	521.306198	1040.59784	1.0415	0.00054296	-0.54929	-0.00028635	0.49224	0.00025661	521.3057816007448	23.392	0.14875	23.392	23.297	23.446	0					5	3	2	0	0	0	0.35021	1	7144	7144		45.972	5.1941	1	155540	+		21663	19044	14025	14081	21980	21980					0.07916834225898128
KSEPSLKRP	9	Unmodified	_KSEPSLKRP_					0	0	0			REV__ENST00000417689.5_1_16:66968938-66969016:+|nuORF	REV__ENST00000417689.5_1_16:66968938-66969016:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.8071899414062	2	521.306198	1040.59784	-1.3273	-0.00069193	1.9654	0.0010246	0.63805	0.00033262	521.8081359087105	23.381	0.10569	23.381	23.326	23.432	0					4	2	2	0	0	0	0.44593	1	7139	7139		37.812	4.9991	1	79581	+		21664	19044	14025	14081	21981	21981					0.07916834225898128
KSEQFKKTL	9	Unmodified	_KSEQFKKTL_					0	0	0		nc|ENSG00000138780|Q8NEC7-3|GSTCD;GSTCD|p.N625Kfs*2|1|0.33|ENSG00000138780|chr4:105845544-105845545|-/A|frameshift_variant;ENSG00000138780|ENST00000515279|GSTCD	nc|ENSG00000138780|Q8NEC7-3|GSTCD	nc|ENSG00000138780|Q8NEC7-3|GSTCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8218383789062	2	554.821681	1107.62881	0.59596	0.00033065	0.18271	0.00010137	0.77867	0.00043202	554.8217795772043	40.288	0.34297	40.288	40.194	40.537	0					24	14	3	0	0	0	0.44593	1	15349	15349		37.812	2.6595	1	177570			21665	4291	14026	14082	21982	21982					0.07929987540137517
KSEQSKLLG	9	Unmodified	_KSEQSKLLG_					0	0	0			REV__ENST00000452732.1_1_2:106002969-106013114:-|nuORF	REV__ENST00000452732.1_1_2:106002969-106013114:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.28472900390625	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.957	1	16.957	16.457	17.457	0								0	0	0	0.046123	1	4951	4951		87.754	5.4493	1		+		21666	18991	14027	14083	21983	21983					0.060574390976853465
KSERDLVKLTR	11	Unmodified	_KSERDLVKLTR_					0	0	0			REV__DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant	REV__DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	672.9013671875	2	672.901525	1343.7885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.259	1	12.259	11.759	12.759	0								0	0	0	0.45674	1	2543	2543		11.636	0.12491	1		+		21667	12740	14028	14084	21984	21984					0.13035495817325682
KSFAESSSLTK	11	Unmodified	_KSFAESSSLTK_					0	0	0		ZNF552|p.F389Ifs*2|1|0.31|ENSG00000178935|chr19:57808099-57808100|-/T|frameshift_variant;ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552;ENSG00000204514|ENST00000435989|ZNF814	ZNF552|p.F389Ifs*2|1|0.31|ENSG00000178935|chr19:57808099-57808100|-/T|frameshift_variant	ZNF552|p.F389Ifs*2|1|0.31|ENSG00000178935|chr19:57808099-57808100|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.8115234375	2	592.81151	1183.60847	1.3844	0.0008207	-1.1443	-0.00067833	0.24017	0.00014238	592.8105725054212	21.842	0.11465	21.842	21.776	21.89	0					6	2	3	0	0	0	0.053596	1	7310	7310		125.68	48.364	1	179730			21668	6740	14029	14085	21985	21985					0.024007720896634055
KSFAKSRQI	9	Unmodified	_KSFAKSRQI_					0	0	0		C8B|p.M53I|1|0.1|ENSG00000021852|chr1:56960110-56960110|C/T|missense_variant	C8B|p.M53I|1|0.1|ENSG00000021852|chr1:56960110-56960110|C/T|missense_variant	C8B|p.M53I|1|0.1|ENSG00000021852|chr1:56960110-56960110|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8145141601562	2	532.81419	1063.61383	0.12961	6.9058E-05	0.38285	0.00020399	0.51246	0.00027304	532.8144112247718	17.181	0.21395	17.181	17.088	17.302	0					11	5	3	0	0	0	0.41113	1	4807	4807		40.778	1.5253	1	870820			21669	337	14030	14086	21986	21986					0.0845654046281652
KSFDEQNVPK	10	Unmodified	_KSFDEQNVPK_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.3040771484375	2	596.303852	1190.59315	0.12023	7.1694E-05	0.38101	0.0002272	0.50124	0.00029889	596.3041272888436	21.649	0.31782	21.649	21.55	21.867	0					20	7	4	0	0	0	0.0068379	1	6918	6918		159.34	58.083	1	871920			21670	7449	14031	14087	21987	21987					0.0054790529247839
KSFDEQNVPK	10	Unmodified	_KSFDEQNVPK_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.3038330078125	2	596.303852	1190.59315	0.09414	5.6136E-05	0.36841	0.00021968	0.46255	0.00027582	596.3039756402011	21.55	0.1667	21.55	21.492	21.658	0					5	3	2	0	0	0	0.28855	1	7177	7177		68.626	2.1965	1	217880			21671	7449	14031	14087	21988	21988					0.0054790529247839
KSFDEQNVPK	10	Unmodified	_KSFDEQNVPK_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.3032836914062	2	596.303852	1190.59315	-1.8253	-0.0010884	1.9388	0.0011561	0.11345	6.7653E-05	596.3047203026483	21.474	0.25466	21.474	21.374	21.629	0					9	6	2	0	0	0	0.44292	1	6242	6242		51.528	1.9917	1	153010			21672	7449	14031	14087	21989	21989					0.0054790529247839
KSFDEQNVPK	10	Unmodified	_KSFDEQNVPK_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.3040161132812	2	596.303852	1190.59315	3.1671	0.0018886	-2.7731	-0.0016536	0.394	0.00023494	596.3025128612798	21.612	0.26732	21.612	21.505	21.772	0					18	5	4	0	0	0	0.25899	1	7075	7075		72.243	8.7094	1	1003300			21673	7449	14031	14087	21990	21990					0.0054790529247839
KSFDTSLIRK	10	Unmodified	_KSFDTSLIRK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	398.89990234375	3	398.89955	1193.67682	0.5936	0.00023679	-0.21292	-8.4932E-05	0.38068	0.00015185	398.89949350193984	24.925	0.14278	24.925	24.889	25.032	0					6	4	2	0	0	0	0.36647	1	7439	7439		59.931	18.851	1	86984			21674	6886	14032	14088	21991	21991					0.08773061460192366
KSFDTSLIRK	10	Unmodified	_KSFDTSLIRK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	398.89947509765625	3	398.89955	1193.67682	-1.3088	-0.00052208	1.0334	0.00041221	-0.27543	-0.00010987	398.90000760872266	24.996	0.32326	24.996	24.873	25.196	0					18	10	3	0	0	0	0.34979	1	7699	7699		61.765	18.114	1	301050			21675	6886	14032	14088	21992	21992					0.08773061460192366
KSFDTSLIRK	10	Unmodified	_KSFDTSLIRK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	398.8992919921875	3	398.89955	1193.67682	-0.13941	-5.5609E-05	-0.32104	-0.00012806	-0.46044	-0.00018367	398.899483939276	25.047	0.14516	25.047	24.953	25.098	0					6	3	2	0	0	0	0.27406	1	7899	7899		70.399	34.081	1	298180			21676	6886	14032	14088	21993	21993					0.08773061460192366
KSFDTSLIRK	10	Unmodified	_KSFDTSLIRK_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	398.8996276855469	3	398.89955	1193.67682	-2.2422	-0.0008944	2.0106	0.00080204	-0.23152	-9.2352E-05	398.90039008766746	25.038	0.22455	25.038	24.986	25.21	0					6	5	2	0	0	0	0.60147	1	7910	7910		34.087	9.8547	1	114090			21677	6886	14032	14088	21994	21994					0.08773061460192366
KSFFDVALK	9	Unmodified	_KSFFDVALK_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.8004150390625	2	527.800217	1053.58588	0.67337	0.0003554	-0.0037503	-1.9794E-06	0.66962	0.00035343	527.8002677580683	39.979	0.15444	39.979	39.926	40.08	0					6	3	2	0	0	0	0.48469	1	15849	15849		41.427	3.6151	1	107590			21678	2446	14033	14089	21995	21995					0.061232174826727714
KSFGELVHK	9	Unmodified	_KSFGELVHK_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.8658752441406	3	348.86607	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.834	1	21.834	21.334	22.334	0								0	0	0	0.3428	1	6076	6076		33.922	2.3918	1				21679	1466	14034	14090	21996	21996					0.056334491971938405
KSFGELVHK	9	Unmodified	_KSFGELVHK_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.865966796875	3	348.86607	1043.57638	0.69544	0.00024262	-0.76801	-0.00026793	-0.072566	-2.5316E-05	348.8657912852076	22.125	0.32409	22.125	22.031	22.355	0					15	7	4	0	0	0	0.27249	1	7131	7131		68.846	19.31	1	1779700			21680	1466	14034	14090	21997	21997					0.056334491971938405
KSFGELVHK	9	Unmodified	_KSFGELVHK_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.8658752441406	3	348.86607	1043.57638	-0.80778	-0.00028181	0.09498	3.3135E-05	-0.7128	-0.00024867	348.8661569456813	21.81	0.11485	21.81	21.746	21.86	0					6	3	2	0	0	0	0.35021	1	6340	6340		53.089	7.1167	1	74330			21681	1466	14034	14090	21998	21998					0.056334491971938405
KSFIFGKMS	9	Unmodified	_KSFIFGKMS_					0	0	0			REV__ENST00000517845.5_2_8:126094662-126094701:-|nuORF	REV__ENST00000517845.5_2_8:126094662-126094701:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7833862304688	2	522.78097	1043.54739	3.4075	0.0017814	0.68288	0.000357	4.0904	0.0021384	522.7812370658569	16.573	0.41387	16.573	16.316	16.73	0					16	8	4	0	0	0	0.38666	1	4630	4630		42.864	7.6636	1	297660	+		21682	19922	14035	14091	21999	21999					0.02735588576547343
KSFMCLIK	8	Unmodified	_KSFMCLIK_					0	0	0			REV__ENST00000557373.1_1_14:35344887-35344989:+|nuORF	REV__ENST00000557373.1_1_14:35344887-35344989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.26824951171875	2	485.266642	968.51873	2.4835	0.0012051	0.4181	0.00020289	2.9016	0.001408	485.2670508376987	11.916	1.0442	11.916	11.778	12.822	0					52	29	2	0	0	0	0.49216	1	2373	2373		60.972	60.972	1	12886000	+		21683	20258	14036	14092	22000	22000					0.0332114767575149
KSFNSHCHL	9	Unmodified	_KSFNSHCHL_					0	0	0			REV__nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	REV__nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.754150390625	2	536.753276	1071.492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.084	1	18.084	17.584	18.584	0								0	0	0	0.3693	1	4447	4447		19.997	1.6724	1		+		21684	13500	14037	14093	22001	22001					-0.04088824891232434
KSFSLINKI	9	Unmodified	_KSFSLINKI_					0	0	0			REV__ENST00000442366.5_1_4:107269181-107269355:+|nuORF	REV__ENST00000442366.5_1_4:107269181-107269355:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.3217163085938	2	525.321317	1048.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.878	1	31.878	31.378	32.378	0								0	0	0	0.28666	1	11025	11025		37.812	0	1		+		21685	19251	14038	14094	22002	22002					0.1057119289109778
KSFSTVTNT	9	Unmodified	_KSFSTVTNT_					0	0	0		ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.75274658203125	2	492.753464	983.492375	0.78585	0.00038723	-2.6789	-0.00132	-1.8931	-0.00093281	492.75189382453357	26.767	0.18672	26.767	26.671	26.858	0					7	4	2	0	0	0	0.14578	1	9287	9287		68.846	10.6	1	430380			21686	8113	14039	14095	22003	22003					-3.126690376120678E-05
KSFSTVTNT	9	Unmodified	_KSFSTVTNT_					0	0	0		ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7529602050781	2	492.753464	983.492375	-0.016332	-8.0477E-06	-1.1136	-0.00054873	-1.1299	-0.00055678	492.75319041077404	26.557	0.098944	26.557	26.509	26.608	0					4	2	2	0	0	0	0.24169	1	8582	8582		56.632	0	1	99999			21687	8113	14039	14095	22004	22004					-3.126690376120678E-05
KSFYEKSK	8	Unmodified	_KSFYEKSK_					0	0	0			REV__ENSG00000117450|ENST00000319248|PRDX1	REV__ENSG00000117450|ENST00000319248|PRDX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7742614746094	2	508.7742	1015.53385	1.3282	0.00067578	-0.97322	-0.00049515	0.35502	0.00018063	508.7735842368131	27.195	0.77079	27.195	26.688	27.459	0					25	15	3	0	0	0	0.24844	1	9715	9715		104.06	0.043199	1	1385900	+		21688	14193	14040	14096	22005	22005					0.026700540689603258
KSGACNLAHK	10	Unmodified	_KSGACNLAHK_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8;KCNJ8|p.T122*|3|0.35|ENSG00000121361|chr12:21773253-21773254|-/CA|frameshift_variant	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7677001953125	2	514.768926	1027.5233	0.13338	6.8662E-05	-2.1622	-0.001113	-2.0288	-0.0010444	514.7676727171819	12.859	0.2039	12.859	12.79	12.994	0					6	4	2	0	0	0	0.39827	1	2849	2849		56.434	1.6575	1	60592			21689	3222	14041	14097	22006	22006					0.010637481428830142
KSGAQKKKK	9	Unmodified	_KSGAQKKKK_					0	0	0		ENSG00000248712|ENST00000503566|CCDC153;ENST00000375140.7_1_11:119064239-119066706:-|nuORF;CCDC153|p.K10N|1|0.43|ENSG00000248712|chr11:119195458-119195458|C/A|missense_variant	ENSG00000248712|ENST00000503566|CCDC153;CCDC153|p.K10N|1|0.43|ENSG00000248712|chr11:119195458-119195458|C/A|missense_variant	ENSG00000248712|ENST00000503566|CCDC153	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.8246154785156	2	501.824558	1001.63456	-0.55823	-0.00028013	1.472	0.00073866	0.91373	0.00045853	501.82548563847365	11.879	2.6337	11.879	11.789	14.423	0					104	62	2	0	0	0	0.38666	3	3572	2868;3547;3572		42.864	3.639	1	35868000			21690	7978;399	14042	14098	22007;22008;22009	22009					0.13381130842469702
KSGAQKKKK	9	Unmodified	_KSGAQKKKK_					0	0	0		ENSG00000248712|ENST00000503566|CCDC153;ENST00000375140.7_1_11:119064239-119066706:-|nuORF;CCDC153|p.K10N|1|0.43|ENSG00000248712|chr11:119195458-119195458|C/A|missense_variant	ENSG00000248712|ENST00000503566|CCDC153;CCDC153|p.K10N|1|0.43|ENSG00000248712|chr11:119195458-119195458|C/A|missense_variant	ENSG00000248712|ENST00000503566|CCDC153	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.82421875	2	501.824558	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.56	1	12.56	12.06	13.06	0								0	0	0	0.080575	1	2701	2701		77.318	3.0625	1				21691	7978;399	14042	14098	22010	22010					0.13381130842469702
KSGEFGVR	8	Unmodified	_KSGEFGVR_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.2377014160156	2	440.237784	878.461016	-0.35674	-0.00015705	0.22551	9.9279E-05	-0.13123	-5.7771E-05	440.2378886031015	15.81	0.21139	15.81	15.726	15.937	0					12	5	3	0	0	0	0.51384	1	4169	4169		58.782	0.97068	1	490370			21692	11724	14043	14099	22011	22011					0.01692345066192047
KSGEVAVLK	9	Unmodified	_KSGEVAVLK_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7843322753906	2	465.784567	929.554582	0.19803	9.2238E-05	-0.73266	-0.00034126	-0.53463	-0.00024902	465.7842513379973	19.946	0.11935	19.946	19.886	20.005	0					6	2	3	0	0	0	0.076532	1	6116	6116		85.862	13.984	1	1036700			21693	3388	14044	14100	22012	22012					0.08698644448611503
KSGFDEETQ	9	Unmodified	_KSGFDEETQ_					0	0	0		ENSG00000185792|ENST00000332836|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7298583984375	2	520.730186	1039.44582	-0.20472	-0.0001066	-0.67442	-0.00035119	-0.87913	-0.00045779	520.7299961500382	12.463	0.60063	12.463	12.37	12.971	0					19	14	2	0	0	0	0.36892	1	2817	2817		44.377	3.599	1	2112700			21694	7106	14045	14101	22013	22013					-0.07232611312315385
KSGNGYTQS	9	Unmodified	_KSGNGYTQS_					0	0	0			REV__ENST00000552787.5_1_12:58089581-58109758:+|nuORF	REV__ENST00000552787.5_1_12:58089581-58109758:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2218933105469	2	471.219788	940.425024	-0.19347	-9.1165E-05	1.8529	0.00087312	1.6594	0.00078195	471.2207821046909	19.763	0.22983	19.763	19.63	19.86	0					7	5	2	0	0	0	0.40353	1	5440	5440		41.427	5.8083	1	30552	+		21695	14805	14046	14102	22014	22014					-0.04757156901325743
KSGPFGKK	8	Unmodified	_KSGPFGKK_					0	0	0		nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.7530212402344	2	424.75307	847.491587	-0.33385	-0.00014181	-0.16877	-7.1687E-05	-0.50263	-0.00021349	424.75307198908513	30.202	0.47124	30.202	30.008	30.479	0					20	10	3	0	0	0	0.44433	1	11254	11254		65.803	0	1	340200			21696	2773	14047	14103	22015	22015					0.06174123451239666
KSGPLAPDG	9	Unmodified	_KSGPLAPDG_					0	0	0			REV__ENST00000474017.5_1_22:32017296-32017569:-|nuORF	REV__ENST00000474017.5_1_22:32017296-32017569:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.2245178222656	2	421.224342	840.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.363	1	20.363	19.863	20.863	0								0	0	0	0.1633	1	5673	5673		56.721	12.344	1		+		21697	19372	14048	14104	22016	22016					0.0075323645500020575
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant;FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.3062744140625	2	478.306001	954.597449	0.016747	8.0102E-06	0.49181	0.00023524	0.50856	0.00024325	478.30623262409813	14.232	0.082761	14.232	14.183	14.266	0					8	3	3	0	0	0	0.019258	1	2907	2907		123.21	46.361	1	249640			21698	2598	14049	14105	22017	22017					0.11833459296690307
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant;FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.30645751953125	2	478.306001	954.597449	-1.4587	-0.00069768	1.0969	0.00052467	-0.36172	-0.00017301	478.306598547986	14.254	0.095325	14.254	14.205	14.3	0					5	3	2	0	0	0	0.054723	1	3046	3046		93.598	30.291	1	501340			21699	2598	14049	14105	22018	22018					0.11833459296690307
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant;FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.3060607910156	2	478.306001	954.597449	-0.32413	-0.00015503	0.41754	0.00019971	0.093406	4.4677E-05	478.30626896632134	14.292	0.096657	14.292	14.255	14.351	0					8	3	3	0	0	0	0.0047071	1	3004	3004		159.28	68.499	1	212800			21700	2598	14049	14105	22019	22019					0.11833459296690307
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant;FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.3060607910156	2	478.306001	954.597449	-2.9001	-0.0013871	1.9925	0.00095301	-0.90759	-0.00043411	478.3070101397859	14.309	0.090464	14.309	14.249	14.34	0					5	3	2	0	0	0	0.070005	1	2997	2997		88.177	16.881	1	280540			21701	2598	14049	14105	22020	22020					0.11833459296690307
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant;FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.3056335449219	2	478.306001	954.597449	-0.65329	-0.00031247	0.11997	5.7384E-05	-0.53331	-0.00025509	478.30600330910573	14.498	0.11839	14.498	14.407	14.525	0					4	2	2	0	0	0	0.026538	1	3616	3616		112.41	50.304	1	170030			21702	2598	14049	14105	22021	22021					0.11833459296690307
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant;FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.3057861328125	2	478.306001	954.597449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.509	1	14.509	14.009	15.009	0								0	0	0	0.00067705	1	3625	3625		129.42	44.062	1				21703	2598	14049	14105	22022	22022					0.11833459296690307
KSGSKKKAPA	10	Unmodified	_KSGSKKKAPA_					0	0	0			REV__ENSG00000125844|ENST00000377813|RRBP1	REV__ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7771301269531	2	501.308741	1000.60293	-2.1074	-0.0010565	2.1906	0.0010982	0.083213	4.1715E-05	501.3095839447813	16.843	0.090946	16.843	16.794	16.885	0					4	2	2	0	0	0	0.44292	1	4084	4084		39.253	0	1	50955	+		21704	14443	14050	14106	22023	22023					0.10265138088504955
KSGTTIALK	9	Unmodified	_KSGTTIALK_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1;DIAPH1|p.P703Hfs*65|2|0.51|ENSG00000131504|chr5:141573742-141573742|G/-|frameshift_variant;DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7841796875	2	459.784567	917.554582	0.14804	6.8065E-05	-0.9673	-0.00044475	-0.81926	-0.00037668	459.7841813154221	19.64	0.15563	19.64	19.537	19.693	0					7	3	3	0	0	0	0.24334	1	5952	5952		56.434	1.6575	1	217300			21705	3725	14051	14107	22024	22024					0.09250644448616185
KSHEETLEDLA	11	Unmodified	_KSHEETLEDLA_					0	0	0			REV__NUMA1|p.N342D|1|0.31|ENSG00000137497|chr11:72017782-72017782|T/C|missense_variant	REV__NUMA1|p.N342D|1|0.31|ENSG00000137497|chr11:72017782-72017782|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	636.3084716796875	2	636.309332	1270.60411	-0.75395	-0.00047975	-1.8878	-0.0012012	-2.6417	-0.001681	636.308480264704	36.141	0.11292	36.141	36.075	36.188	0					6	4	2	0	0	0	0.75295	1	12243	12243		22.58	0.89391	1	46532	+		21706	21313	14052	14108	22025	22025					-0.020367371238762644
KSHLFDSQI	9	Unmodified	_KSHLFDSQI_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.857421875	3	358.857463	1073.55056	0.125	4.4857E-05	-0.30763	-0.0001104	-0.18263	-6.5539E-05	358.8573127881849	23.105	0.1196	23.105	23.027	23.146	0					11	4	3	0	0	0	0.61124	1	6637	6637		15.333	0	1	322540	+		21707	13016	14053	14109	22026	22026					0.016725549548937124
KSHRSLMP	8	Unmodified	_KSHRSLMP_					0	0	0			REV__PLOD3|p.G422S|1|0.3|ENSG00000106397|chr7:101211685-101211685|C/T|missense_variant	REV__PLOD3|p.G422S|1|0.3|ENSG00000106397|chr7:101211685-101211685|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2608947753906	2	478.260736	954.50692	-0.29411	-0.00014066	1.0013	0.00047889	0.7072	0.00033823	478.26113498542264	17.138	0.14775	17.138	17.099	17.247	0					11	4	4	0	0	0	0.61938	1	4240	4240		45.952	3.5558	1	1047300	+		21708	21393	14054	14110	22027	22027					0.027846669767768617
KSHTGQRR	8	Unmodified	_KSHTGQRR_					0	0	0		ENST00000391694.4_1_19:58989172-58992090:+|nuORF;ENSG00000083838|ENST00000594369|ZNF446	ENST00000391694.4_1_19:58989172-58992090:+|nuORF	ENST00000391694.4_1_19:58989172-58992090:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.28851318359375	2	485.270481	968.52641	0.84626	0.00041067	-1.0635	-0.00051608	-0.21724	-0.00010542	485.26996383183655	11.905	0.79854	11.905	11.784	12.582	0					47	23	3	0	0	0	0.78142	1	2630	2630		23.042	23.042	1	5786500			21709	1703	14055	14111	22028	22028					0.04088759311900958
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8055419921875	2	524.8055	1047.59645	1.4103	0.00074013	-0.23935	-0.00012561	1.1709	0.00061451	524.8053794286628	31.359	0.31648	31.359	31.204	31.521	0					27	13	3	0	0	0	0.17062	1	10040	10040		65.157	5.039	1	173010			21710	1708	14056	14112	22029	22029					0.07455200137110296
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.805908203125	2	524.8055	1047.59645	1.8557	0.0009739	-0.94737	-0.00049719	0.90837	0.00047672	524.8049998639331	31.647	0.61612	31.647	31.372	31.988	0					36	15	3	0	0	0	0.13907	1	11482	11482		70.399	11.617	1	1182500			21711	1708	14056	14112	22030	22030					0.07455200137110296
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8064575195312	2	524.8055	1047.59645	5.3373	0.002801	-3.4461	-0.0018085	1.8912	0.00099251	524.8034952688549	31.373	0.28643	31.373	31.254	31.54	0					16	11	2	0	0	0	0.15593	1	10389	10389		66.92	3.3864	1	54413			21712	1708	14056	14112	22031	22031					0.07455200137110296
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8057250976562	2	524.8055	1047.59645	0.9992	0.00052438	-0.32356	-0.00016981	0.67563	0.00035458	524.805276869338	31.581	0.47847	31.581	31.348	31.827	0					28	10	4	0	0	0	0.35096	1	11870	11870		45.908	6.6553	1	766820			21713	1708	14056	14112	22032	22032					0.07455200137110296
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.30712890625	2	524.8055	1047.59645	1.6122	0.00084607	-0.30051	-0.00015771	1.3116	0.00068836	524.8053423410944	31.436	0.37561	31.436	31.243	31.619	0					13	9	2	0	0	0	0.34452	1	10779	10779		46.457	5.6786	1	141730			21714	1708	14056	14112	22033	22033					0.07455200137110296
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.805908203125	2	524.8055	1047.59645	0.54381	0.0002854	0.19945	0.00010467	0.74326	0.00039007	524.8055904824371	31.578	0.66438	31.578	31.319	31.984	0					36	13	4	0	0	0	0.014648	1	11783	11783		131.12	29.863	1	1803800			21715	1708	14056	14112	22034	22034					0.07455200137110296
KSIDTIRV	8	Unmodified	_KSIDTIRV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.28179931640625	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.837	1	12.837	12.337	13.337	0								0	0	0	1.7419	1	2832	2832		39.253	2.0937	1		+		21716	15602;22247	14057	14113	22035	22035					0.08177760305852644
KSIEVEIMQQ	10	Unmodified	_KSIEVEIMQQ_					0	0	0			REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.81494140625	2	602.815738	1203.61692	-1.8942	-0.0011418	0.43671	0.00026326	-1.4575	-0.00087858	602.8159914529656	17.594	0.32995	17.594	17.493	17.823	0					24	8	4	0	0	0	0.34979	1	4398	4398		49.536	0	1	1084600	+		21717	16264	14058	14114	22036	22036					0.023260027346395873
KSIFIGLQS	9	Unmodified	_KSIFIGLQS_					0	0	0			REV__ENSG00000120509|ENST00000239666|PDZD11	REV__ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.79278564453125	2	496.792392	991.570232	0.15029	7.4663E-05	-0.25447	-0.00012642	-0.10418	-5.1755E-05	496.79221613221046	40.236	0.22057	40.236	40.135	40.356	0					28	11	3	0	0	0	0.34452	1	14285	14285		46.457	2.34	1	342660	+		21718	14284	14059	14115	22037	22037					0.07410930965670559
KSIGRMTPE	9	Unmodified	_KSIGRMTPE_					0	0	0			REV__ENST00000309170.7_1_3:150996115-150996145:-|nuORF	REV__ENST00000309170.7_1_3:150996115-150996145:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.77130126953125	2	509.771134	1017.52771	-0.02702	-1.3774E-05	-0.11596	-5.9112E-05	-0.14298	-7.2886E-05	509.7711929742029	14.617	0.97264	14.617	14.257	15.229	0					31	19	3	0	0	0	0.067603	1	3638	3638		82.75	5.4329	1	617530	+		21719	18258	14060	14116	22038	22038					0.01965212565778529
KSIKAKSLH	9	Unmodified	_KSIKAKSLH_					0	0	0			REV__ENSG00000123131|ENST00000379341|PRDX4	REV__ENSG00000123131|ENST00000379341|PRDX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.3186950683594	2	506.319109	1010.62366	0.83825	0.00042442	-1.0924	-0.00055311	-0.25416	-0.00012868	506.3185410656278	21.8	0.14268	21.8	21.738	21.881	0					8	3	3	0	0	0	0.50858	1	7009	7009		31.53	1.2121	1	379070	+		21720	14352	14061	14117	22039	22039					0.11877728468175519
KSIPALSMETQ	11	Unmodified	_KSIPALSMETQ_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.3|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant;ENSG00000198824|ENST00000361283|CHAMP1	CHAMP1|p.F485Lfs*100|1|0.3|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.3|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2131652832031	3	402.212918	1203.61692	-0.59714	-0.00024018	-0.34645	-0.00013935	-0.94358	-0.00037952	402.21288816975624	18.906	1.7399	18.906	18.621	20.36	0					51	35	2	0	0	0	0.42065	1	5762	5762		50.034	7.1692	1	554840			21721	503	14062	14118	22040	22040					0.023260027346395873
KSIPLTYAR	9	Unmodified	_KSIPLTYAR_					0	0	0			REV__ENSG00000166262|ENST00000299338|FAM227B	REV__ENSG00000166262|ENST00000299338|FAM227B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8114624023438	2	524.811116	1047.60768	1.8567	0.00097442	-1.408	-0.00073895	0.44868	0.00023547	524.810347133253	30.286	0.4871	30.286	30.05	30.537	0					23	12	3	0	0	0	0.10915	1	10864	10864		77.318	3.0625	1	828350	+		21722	16102	14063	14119	22041	22041					0.08578022231245086
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.28936767578125	2	479.290017	956.565481	0.024051	1.1527E-05	-1.1176	-0.00053567	-1.0936	-0.00052415	479.28946978803157	18.136	0.15487	18.136	18.037	18.192	0					10	5	2	0	0	0	0.22837	1	4451	4451		58.23	6.8945	1	232930			21723	3774	14064	14120	22042	22042					0.08546046822903008
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2901611328125	2	479.290017	956.565481	0.47073	0.00022562	-1.6077	-0.00077055	-1.137	-0.00054493	479.28960146781293	18.442	0.31822	18.442	18.294	18.612	0					27	7	6	0	0	0	0.010427	1	5383	5383		140.11	35.366	1	1825500			21724	3774	14064	14120	22043	22043					0.08546046822903008
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.28948974609375	2	479.290017	956.565481	-1.4202	-0.00068069	0.65985	0.00031626	-0.76036	-0.00036443	479.29039483291206	18.142	0.18267	18.142	18.026	18.209	0					12	6	3	0	0	0	0.15558	1	4690	4690		66.962	3.6557	1	139930			21725	3774	14064	14120	22044	22044					0.08546046822903008
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.28985595703125	2	479.290017	956.565481	0.66348	0.000318	-1.5416	-0.00073886	-0.87809	-0.00042086	479.2895486571785	18.402	0.37101	18.402	18.19	18.561	0					19	7	3	0	0	0	0.14578	1	5654	5654		68.846	12.125	1	1111500			21726	3774	14064	14120	22045	22045					0.08546046822903008
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2896728515625	2	479.290017	956.565481	0.019443	9.3187E-06	-0.94738	-0.00045407	-0.92793	-0.00044475	479.2895163140222	18.205	0.14033	18.205	18.118	18.259	0					6	3	2	0	0	0	0.24334	1	4699	4699		56.434	1.6575	1	107700			21727	3774	14064	14120	22046	22046					0.08546046822903008
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2900085449219	2	479.290017	956.565481	-0.66018	-0.00031642	0.2635	0.00012629	-0.39668	-0.00019012	479.29013283184355	18.379	0.36603	18.379	18.223	18.589	0					13	7	3	0	0	0	0.029571	1	5479	5479		109.44	19.069	1	1216000			21728	3774	14064	14120	22047	22047					0.08546046822903008
KSISDWRV	8	Unmodified	_KSISDWRV_					0	0	0		ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;TMTC4|p.N491Tfs*19|1|0.36|ENSG00000125247|chr13:100626128-100626128|T/-|frameshift_variant;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000489713.5_1_13:101277731-101290025:-|nuORF	ENST00000489713.5_1_13:101277731-101290025:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2743225097656	2	495.771991	989.529429	0.95314	0.00047254	1.3737	0.00068106	2.3269	0.0011536	495.77285287230615	22.183	0.41771	22.183	22.02	22.438	0					23	8	4	0	0	0	0.64144	1	7376	7376		42.396	8.2236	1	1521100			21729	3406	14065	14121	22048	22048					0.034245896460333825
KSIVKFDGK	9	Unmodified	_KSIVKFDGK_					0	0	0			REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.3056945800781	2	511.305667	1020.59678	-0.0029618	-1.5144E-06	0.88168	0.00045081	0.87872	0.00044929	511.30582034576537	17.419	0.12921	17.419	17.331	17.46	0					5	3	2	0	0	0	0.47473	1	4919	4919		35.152	3.1972	1	238900	+		21730	21697	14066	14122	22049	22049					0.08730619856999056
KSIVNGPLT	9	Unmodified	_KSIVNGPLT_					0	0	0			REV__nc|ENSG00000135298|O60242-2|ADGRB3	REV__nc|ENSG00000135298|O60242-2|ADGRB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7760314941406	2	464.776742	927.538931	0.12453	5.7881E-05	-1.2934	-0.00060113	-1.1688	-0.00054325	464.77627976820776	25.113	0.2345	25.113	24.992	25.226	0					7	5	2	0	0	0	0.1424	1	8515	8515		69.628	2.134	1	883640	+		21731	14792	14067	14123	22050	22050					0.07226357931563143
KSIWLCMMKT	10	Unmodified	_KSIWLCMMKT_					0	0	0		ENST00000590519.2_1_19:33149896-33166702:-|nuORF	ENST00000590519.2_1_19:33149896-33166702:-|nuORF	ENST00000590519.2_1_19:33149896-33166702:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.21112060546875	3	414.213207	1239.61779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.832	1	23.832	23.332	24.332	0								0	0	0	0.37672	1	8137	8137		37.6	0.091722	1				21732	10950	14068	14124	22051	22051					0.007568025783257326
KSKAGRPIK	9	Unmodified	_KSKAGRPIK_					0	0	0		ENST00000462537.3_1_6:36646575-36648628:+|nuORF	ENST00000462537.3_1_6:36646575-36648628:+|nuORF	ENST00000462537.3_1_6:36646575-36648628:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.88189697265625	3	328.881943	983.623999	0.52738	0.00017345	-0.87241	-0.00028692	-0.34503	-0.00011347	328.8817939272462	11.852	0.1618	11.852	11.786	11.948	0					10	5	3	0	0	0	0.15558	1	2379	2379		66.962	4.8545	1	569810			21733	9741	14069	14125	22052	22052					0.13153148188018804
KSKAGRPIK	9	Unmodified	_KSKAGRPIK_					0	0	0		ENST00000462537.3_1_6:36646575-36648628:+|nuORF	ENST00000462537.3_1_6:36646575-36648628:+|nuORF	ENST00000462537.3_1_6:36646575-36648628:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.8819580078125	3	328.881943	983.623999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.905	1	11.905	11.405	12.405	0								0	0	0	0.11963	1	2404	2404		66.962	14.025	1				21734	9741	14069	14125	22053	22053					0.13153148188018804
KSKELSKQ	8	Unmodified	_KSKELSKQ_					0	0	0		ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.27911376953125	2	474.279649	946.544745	0.69788	0.00033099	-1.4851	-0.00070436	-0.78723	-0.00037337	474.27903366938347	11.893	3.6471	11.893	11.767	15.414	0					202	83	5	0	0	0	0.2678	1	3465	3465		93.195	5.4412	1	247480000			21735	8914	14070	14126	22054	22054					0.06933456443232444
KSKERKPE	8	Unmodified	_KSKERKPE_					0	0	0		nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2;DLGAP2|p.T341Hfs*6|1|0.11|ENSG00000198010|chr8:1565708-1565709|-/C|frameshift_variant	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.32696533203125	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.516	1	17.516	17.016	18.016	0								0	0	0	1.7419	1	5067	5067		56.721	3.7844	1				21736	7520	14071	14127	22055	22055					0.06628261191792717
KSKFFEDSE	9	Unmodified	_KSKFFEDSE_					0	0	0		ENST00000472077.1_1_2:27604468-27607956:-|nuORF;PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant;PPM1G|p.G393Afs*25|1|0.08|ENSG00000115241|chr2:27383389-27383389|C/-|frameshift_variant;ENSG00000115241|ENST00000344034|PPM1G	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.7645263671875	2	558.764029	1115.5135	0.12128	6.7769E-05	1.2816	0.00071613	1.4029	0.0007839	558.7648060603865	26.414	0.20207	26.414	26.349	26.551	0					13	7	2	0	0	0	0.48389	1	8299	8299		34.173	0	1	197880			21737	2892	14072	14128	22056	22056					-0.03963161381534519
KSKGASAGRE	10	Unmodified	_KSKGASAGRE_					0	0	0		SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000483847.1_1_3:47712102-47719818:-|nuORF	SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant	SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.8503723144531	3	330.849079	989.525407	3.0057	0.00099443	1.0693	0.00035377	4.075	0.0013482	330.849396839742	16.914	0.26113	16.914	16.812	17.073	0					11	5	3	0	0	0	0.58189	1	4792	4792		48.602	18.033	1	1962200			21738	6428	14073	14129	22057	22057					0.030225001523263018
KSKKKGKGSK	10	Unmodified	_KSKKKGKGSK_					0	0	0			REV__nc|ENSG00000125743|P62316-2|SNRPD2	REV__nc|ENSG00000125743|P62316-2|SNRPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2376403808594	3	359.236385	1074.68733	3.0933	0.0011112	0.65545	0.00023546	3.7487	0.0013467	359.2365717365826	27.867	0.86191	27.867	27.729	28.591	0					39	17	3	0	0	0	0.72229	1	10024	10024		18.531	0.26896	1	1228300	+		21739	14439	14074	14130	22058	22058					0.15297088905276723
KSKLGNQK	8	Unmodified	_KSKLGNQK_					0	0	0			REV__ENSG00000169330|ENST00000305428|MINAR1	REV__ENSG00000169330|ENST00000305428|MINAR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7740783691406	2	451.774534	901.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.841	1	17.841	17.341	18.341	0								0	0	0	1.7419	1	5370	5370		60.972	7.6205	1		+		21740	16308	14075	14131	22059	22059					0.07980893508658937
KSKNHKKTA	9	Unmodified	_KSKNHKKTA_					0	0	0		ENST00000565120.1_1_17:42015742-42016079:+|nuORF	ENST00000565120.1_1_17:42015742-42016079:+|nuORF	ENST00000565120.1_1_17:42015742-42016079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.3121337890625	2	521.311815	1040.60908	1.7333	0.00090358	-1.3228	-0.00068957	0.41053	0.00021401	521.3110301372885	12.158	0.46433	12.158	12.057	12.521	0					15	11	2	0	0	0	0.12834	1	2671	2671		66.429	0.96389	1	453100			21741	10745	14076	14132	22060	22060					0.09039656320032918
KSKRARVAQ	9	Unmodified	_KSKRARVAQ_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.3246459960938	2	522.325257	1042.63596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.952	1	30.952	30.452	31.452	0								0	0	0	0.3063	1	11623	11623		33.922	0	1				21742	4940	14077	14133	22061	22061					0.116347649312047
KSKREKKD	8	Unmodified	_KSKREKKD_					0	0	0		ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.8033447265625	2	509.803823	1017.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.714	1	12.714	12.214	13.214	0								0	0	0	1.7419	1	2733	2733		24.519	0	1				21743	2792	14078	14134	22062	22062					0.08499950083125896
KSKRRKRE	8	Unmodified	_KSKRRKRE_					0	0	0		ZC3H6|p.R99Efs*23|1|0.44|ENSG00000188177|chr2:112303304-112303304|A/-|frameshift_variant;ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant;ZC3H6|p.Q197Tfs*11|1|0.21|ENSG00000188177|chr2:112310129-112310130|-/A|frameshift_variant;ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant;ZC3H6|p.S1077Vfs*4|1|0.35|ENSG00000188177|chr2:112332141-112332141|A/-|frameshift_variant;ENSG00000188177|ENST00000409871|ZC3H6	ZC3H6|p.R99Efs*23|1|0.44|ENSG00000188177|chr2:112303304-112303304|A/-|frameshift_variant	ZC3H6|p.R99Efs*23|1|0.44|ENSG00000188177|chr2:112303304-112303304|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.3455200195312	2	544.343981	1086.67341	1.9778	0.0010766	0.84885	0.00046207	2.8267	0.0015387	544.3442980914958	20.036	0.26564	20.036	19.927	20.193	0					12	5	3	0	0	0	0.43813	1	6306	6306		66.429	5.4573	1	2424800			21744	7242	14079	14135	22063	22063					0.13353856196840752
KSKSETKNK	9	Unmodified	_KSKSETKNK_					0	0	0		PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant;PKD2L2|p.F477Lfs*7|1|0.39|ENSG00000078795|chr5:137921733-137921733|T/-|frameshift_variant;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant	PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.5367126464844	3	350.536501	1048.58767	1.4518	0.00050891	-0.66502	-0.00023311	0.78677	0.00027579	350.5362678278624	12.513	0.77637	12.513	12.427	13.203	0					33	18	3	0	0	0	0.51991	1	2831	2831		37.508	5.8739	1	2361100			21745	1607	14080	14136	22064	22064					0.06532226500644356
KSKSFLKK	8	Unmodified	_KSKSFLKK_					0	0	0			REV__ENST00000496726.5_1_3:25777437-25777596:-|nuORF	REV__ENST00000496726.5_1_3:25777437-25777596:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.3105163574219	2	483.310752	964.606951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.384	1	33.384	32.884	33.884	0								0	0	0	1.7419	1	11199	11199		40.778	0	1		+		21746	19778	14081	14137	22065	22065					0.12323227582214713
KSKTKWTK	8	Unmodified	_KSKTKWTK_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.8066711425781	2	503.805834	1005.59712	1.6881	0.00085047	-1.6064	-0.00080931	0.08171	4.1166E-05	503.8052032333533	23.277	0.13063	23.277	23.193	23.324	0					5	3	2	0	0	0	0.61925	1	6722	6722		45.972	1.5951	1	30053			21747	11444	14082	14138	22066	22066					0.09454039576837658
KSKTMIFMQK	10	Unmodified	_KSKTMIFMQK_					0	0	0		CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant	CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant	CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.56298828125	3	414.563005	1240.66719	0.99661	0.00041316	-0.95454	-0.00039572	0.042063	1.7438E-05	414.5626742485024	18.068	0.93474	18.068	17.963	18.897	0					29	19	2	0	0	0	0.63019	1	5345	5345		30.569	30.569	1	1670200			21748	403	14083	14139	22067	22067					0.05647833858802187
KSKVEYKL	8	Unmodified	_KSKVEYKL_					0	0	0		RYK|p.N182Ifs*5|1|0.28|ENSG00000163785|chr3:134209739-134209739|T/-|frameshift_variant;ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	RYK|p.N182Ifs*5|1|0.28|ENSG00000163785|chr3:134209739-134209739|T/-|frameshift_variant	RYK|p.N182Ifs*5|1|0.28|ENSG00000163785|chr3:134209739-134209739|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.8005065917969	2	497.800217	993.585882	0.17999	8.96E-05	-0.74569	-0.0003712	-0.56569	-0.0002816	497.7998012092754	28.927	0.14413	28.927	28.836	28.981	0					5	3	2	0	0	0	0.65148	1	9662	9662		40.778	1.972	1	76393			21749	5608	14084	14140	22068	22068					0.0888321748270755
KSKVLVKSP	9	Unmodified	_KSKVLVKSP_					0	0	0		BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.2181091308594	3	329.218332	984.633166	0.5269	0.00017347	-0.56996	-0.00018764	-0.043057	-1.4175E-05	329.21815424937336	33.777	1.9224	33.777	33.609	35.531	0					103	50	4	0	0	0	0.54267	1	12647	12647		28.081	0	1	20855000			21750	316	14085	14141	22069	22069					0.14023496753691234
KSLDFVQIV	9	Unmodified	_KSLDFVQIV_					0	0	0			REV__ENST00000579124.5_1_18:20495424-20516752:+|nuORF	REV__ENST00000579124.5_1_18:20495424-20516752:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.8060302734375	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.467	1	31.467	30.967	31.967	0								0	0	0	0.24724	1	10838	10838		44.117	3.3386	1		+		21751	20441	14086	14142	22070	22070					0.07455200137110296
KSLDLVTMK	9	Unmodified	_KSLDLVTMK_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000164402|Q92599-3|SEPTIN8	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7994995117188	2	517.79936	1033.58417	1.0084	0.00052213	-0.90254	-0.00046733	0.10582	5.4795E-05	517.7988225215707	29.625	0.21131	29.625	29.522	29.734	0					6	4	2	0	0	0	0.019258	1	11001	11001		123.21	48.953	1	156810			21752	3411;5688	14087	14143	22071	22071					0.06871840402436646
KSLDLVTMK	9	Unmodified	_KSLDLVTMK_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000164402|Q92599-3|SEPTIN8	ENSG00000125354|ENST00000394610|SEPTIN6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.799560546875	2	517.79936	1033.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.58	1	29.58	29.08	30.08	0								0	0	0	0.054877	1	10852	10852		84.817	23.845	1				21753	3411;5688	14087	14143	22072	22072					0.06871840402436646
KSLDSELGVP	10	Unmodified	_KSLDSELGVP_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7858276367188	2	522.782222	1043.54989	1.6686	0.00087232	2.5753	0.0013463	4.2439	0.0022186	522.784358590533	18.928	0.14955	18.928	18.865	19.015	0					12	4	4	0	0	0	0.16018	1	5618	5618		84.916	13.038	1	762510	+		21754	15710	14088	14144	22073	22073					0.029857155152058112
KSLDSELGVP	10	Unmodified	_KSLDSELGVP_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7855224609375	2	522.782222	1043.54989	1.0901	0.00056991	3.7087	0.0019389	4.7989	0.0025088	522.7841956427844	18.679	0.086905	18.679	18.643	18.73	0					6	2	3	0	0	0	0.26198	1	4932	4932		71.877	2.2498	1	164530	+		21755	15710	14088	14144	22074	22074					0.029857155152058112
KSLELPHF	8	Unmodified	_KSLELPHF_					0	0	0		ENST00000308377.8_1_17:33679129-33679345:-|nuORF	ENST00000308377.8_1_17:33679129-33679345:-|nuORF	ENST00000308377.8_1_17:33679129-33679345:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.76885986328125	2	485.77146	969.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.841	1	23.841	23.341	24.341	0								0	0	0	1.7419	1	7217	7217		51.335	7.2187	1				21756	8532	14089	14145	22075	22075					0.0423837527713431
KSLELRKCE	9	Unmodified	_KSLELRKCE_					0	0	0		ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3057861328125	2	553.305341	1104.59613	3.6407	0.0020144	-3.5603	-0.0019699	0.080446	4.4511E-05	553.303316551627	21.662	0.41733	21.662	21.454	21.871	0					15	8	2	0	0	0	0.1424	1	7097	7097		69.628	9.5094	1	1817800			21757	4330	14090	14146	22076	22076					0.048014571456405974
KSLENHLAK	9	Unmodified	_KSLENHLAK_					0	0	0		ZBTB41|p.D754Tfs*3|1|0.04|ENSG00000177888|chr1:197159829-197159830|-/AGAATGT|frameshift_variant;ZBTB41|p.D754Vfs*8|1|0.04|ENSG00000177888|chr1:197159828-197159829|-/GTTA|frameshift_variant;ENSG00000177888|ENST00000367405|ZBTB41;ZBTB41|p.K238Nfs*4|2|0.33|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant;ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF;ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant;ZBTB41|p.H239Tfs*24|2|0.36|ENSG00000177888|chr1:197199759-197199760|-/T|frameshift_variant	ZBTB41|p.D754Tfs*3|1|0.04|ENSG00000177888|chr1:197159829-197159830|-/AGAATGT|frameshift_variant;ZBTB41|p.H239Tfs*24|2|0.36|ENSG00000177888|chr1:197199759-197199760|-/T|frameshift_variant	ZBTB41|p.D754Tfs*3|1|0.04|ENSG00000177888|chr1:197159829-197159830|-/AGAATGT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.3001098632812	2	520.298373	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.014	1	17.014	16.514	17.514	0								0	0	0	0.069826	1	4181	4181		80.455	23.734	1				21758	6691;23128	14091	14147	22077	22077					0.064445477088384
KSLENILTL	9	Unmodified	_KSLENILTL_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000470353.1_1_10:5967388-5971349:+|nuORF;ENST00000479433.5_1_10:5967388-5970349:+|nuORF	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	344.2093505859375	3	344.209613	1029.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.874	1	24.874	24.374	25.374	0								0	0	0	0.3245	1	7408	7408		30.318	0	1				21759	3920	14092	14148	22078	22078					0.09339182791563871
KSLKMKRKA	9	Oxidation (M)	_KSLKM(Oxidation (M))KRKA_		KSLKM(1)KRKA		KSLKM(77)KRKA	0	0	1			REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3466796875	2	553.347343	1104.68013	0.62367	0.00034511	-2.1577	-0.001194	-1.5341	-0.00084887	553.3461512578652	15.81	0.25317	15.81	15.726	15.979	0					9	6	2	0	0	0	0.1115	1	4170	4170		76.774	16.656	1	479110	+		21760	19203	14093	14149	22079	22079		706			0.13198033033199863
KSLKYAIQ	8	Unmodified	_KSLKYAIQ_					0	0	0		tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7867736816406	2	475.78711	949.559667	0.33883	0.00016121	-0.9875	-0.00046984	-0.64867	-0.00030863	475.78657483233786	26.457	0.3176	26.457	26.368	26.685	0					14	7	3	0	0	0	0.5676	1	9139	9139		53.351	2.016	1	541360			21761	22767	14094	14150	22080	22080					0.08286948311229025
KSLLEVHDN	9	Unmodified	_KSLLEVHDN_					0	0	0			REV__tr|U7T5N9|U7T5N9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00122PE=4SV=1	REV__tr|U7T5N9|U7T5N9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00122PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7777099609375	2	527.780013	1053.54547	0.28484	0.00015034	-3.8991	-0.0020578	-3.6142	-0.0019075	527.7779210801232	14.446	0.14538	14.446	14.348	14.494	0					5	3	2	0	0	0	0.53064	1	3756	3756		29.17	2.4771	1	230410	+		21762	22188	14095	14151	22081	22081					0.02084251092287559
KSLNLEMQEL	10	Unmodified	_KSLNLEMQEL_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2122497558594	3	402.212918	1203.61692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.967	1	36.967	36.467	37.467	0								0	0	0	0.3998	1	14412	14412		30.569	1.0181	1				21763	4286	14096	14152	22082	22082					0.023260027346623247
KSLQFVVGR	9	Unmodified	_KSLQFVVGR_					0	0	0		nc|ENSG00000070748|P28329-3|CHAT;nc|ENSG00000070748|P28329-2|CHAT;ENSG00000070748|ENST00000337653|CHAT	nc|ENSG00000070748|P28329-3|CHAT	nc|ENSG00000070748|P28329-3|CHAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.3121337890625	2	517.311284	1032.60801	0.96478	0.00049909	0.96032	0.00049679	1.9251	0.00099588	517.3117174285924	25.661	0.16853	25.661	25.552	25.721	0					5	3	2	0	0	0	0.56424	1	9148	9148		25.574	0.44807	1	83446			21764	1455	14097	14153	22083	22083					0.09301441951151901
KSLRAQEE	8	Unmodified	_KSLRAQEE_					0	0	0			REV__SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant	REV__SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.76104736328125	2	480.759081	959.503609	-0.52368	-0.00025177	2.8543	0.0013722	2.3306	0.0011205	480.7611731553578	24.4	0.21556	24.4	24.278	24.494	0					11	4	4	0	0	0	0.61925	1	8542	8542		45.972	4.5456	1	264610	+		21765	14749	14098	14154	22084	22084					0.022236954037566647
KSLRAVEAKL	10	Unmodified	_KSLRAVEAKL_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8517456054688	2	557.850773	1113.68699	-0.1762	-9.8295E-05	1.5746	0.00087842	1.3984	0.00078012	557.8518638523246	21.299	0.21505	21.299	21.192	21.407	0					6	4	2	0	0	0	0.48965	1	7057	7057		34.173	3.6689	1	176150	+		21766	14529	14099	14155	22085	22085					0.1346966918540602
KSLSKVGIY	9	Unmodified	_KSLSKVGIY_					0	0	0			REV__tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	REV__tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.8002014160156	2	497.800217	993.585882	0.70034	0.00034863	-0.71999	-0.00035841	-0.019648	-9.7809E-06	497.79981391451116	29.132	0.37047	29.132	29.007	29.377	0					18	9	3	0	0	0	0.1115	1	10364	10364		76.774	2.7994	1	433680	+		21767	22187	14100	14156	22086	22086					0.08883217482718919
KSLTSWLTQ	9	Unmodified	_KSLTSWLTQ_					0	0	0		FPR2|p.K276Nfs*40|1|0.04|ENSG00000171049|chr19:51769485-51769486|-/CAATG|frameshift_variant	FPR2|p.K276Nfs*40|1|0.04|ENSG00000171049|chr19:51769485-51769486|-/CAATG|frameshift_variant	FPR2|p.K276Nfs*40|1|0.04|ENSG00000171049|chr19:51769485-51769486|-/CAATG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2947387695312	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.043	1	12.043	11.543	12.543	0								0	0	0	0.34101	1	2470	2470		27.047	3.5246	1				21768	11148	14101	14157	22087	22087					0.042177256146942455
KSLVEKPQ	8	Unmodified	_KSLVEKPQ_					0	0	0			REV__ENST00000394295.5_1_2:70008659-70015252:+|nuORF	REV__ENST00000394295.5_1_2:70008659-70015252:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7766418457031	2	464.776742	927.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.796	1	24.796	24.296	25.296	0								0	0	0	1.7419	1	7373	7373		74.255	2.3776	1		+		21769	18861	14102	14158	22088	22088					0.07226357931563143
KSLWTKSS	8	Unmodified	_KSLWTKSS_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.76031494140625	2	468.761092	935.507631	-0.21008	-9.8475E-05	0.13017	6.1019E-05	-0.079905	-3.7457E-05	468.7612420399049	29.58	0.17141	29.58	29.472	29.644	0					10	4	3	0	0	0	0.72381	1	9950	9950		30.504	1.3541	1	76332			21770	5112	14103	14159	22089	22089					0.037297848974731096
KSMAWRVL	8	Unmodified	_KSMAWRVL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7830505371094	2	495.781305	989.548056	3.4169	0.001694	0.19774	9.8035E-05	3.6146	0.0017921	495.78133914400274	20.535	0.098169	20.535	20.475	20.573	0					6	3	2	0	0	0	0.49216	1	5746	5746		60.972	2.19	1	157070			21771	7426	14104	14160	22090	22090					0.0528642801625665
KSMESVMVK	9	Unmodified	_KSMESVMVK_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;ENST00000576114.1_1_17:7405853-7406021:+|nuORF	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7695922851562	2	519.769745	1037.52494	1.1184	0.00058133	-1.8	-0.00093558	-0.68155	-0.00035425	519.7690329486362	22.495	0.21051	22.495	22.417	22.628	0					8	4	3	0	0	0	0.052435	1	7622	7622		94.409	20.154	1	222810			21772	6845	14105	14161	22091	22091					0.007676211165971836
KSMFLTVKI	9	Unmodified	_KSMFLTVKI_					0	0	0		DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;DSCAML1|p.M1051Wfs*8|3|0.26|ENSG00000177103|chr11:117469970-117469970|C/-|frameshift_variant	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.8206176757812	2	533.820095	1065.62564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.529	1	41.529	41.029	42.029	0								0	0	0	0.10826	1	15780	15780		69.628	14.851	1				21773	848	14106	14162	22092	22092					0.09545021161761724
KSMFLTVKI	9	Unmodified	_KSMFLTVKI_					0	0	0		DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;DSCAML1|p.M1051Wfs*8|3|0.26|ENSG00000177103|chr11:117469970-117469970|C/-|frameshift_variant	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.82080078125	2	533.820095	1065.62564	0.71343	0.00038084	-0.093779	-5.0061E-05	0.61965	0.00033078	533.8200400172849	41.487	0.2205	41.487	41.326	41.546	0					9	5	2	0	0	0	0.0406	1	16500	16500		98.629	21.312	1	112730			21774	848	14106	14162	22093	22093					0.09545021161761724
KSMLLINL	8	Unmodified	_KSMLLINL_					0	0	0			REV__ENST00000342992.10_3_2:179391348-179391462:-|nuORF	REV__ENST00000342992.10_3_2:179391348-179391462:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.28564453125	2	466.285889	930.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.886	1	41.886	41.386	42.386	0								0	0	0	1.7419	1	15898	15898		77.318	13.11	1		+		21775	18462	14107	14163	22094	22094					0.08916776581918384
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2958984375	2	554.294973	1106.57539	1.415	0.00078432	-0.28825	-0.00015978	1.1267	0.00062454	554.2948850159806	17.271	0.13603	17.271	17.172	17.308	0					10	4	3	0	0	0	0.01169	1	4082	4082		136.49	37.907	1	482080			21776	6559	14108	14164	22095	22095					0.026368667659426137
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.29541015625	2	554.294973	1106.57539	1.8171	0.0010072	-1.5691	-0.00086972	0.24807	0.0001375	554.294239772207	17.582	0.20816	17.582	17.499	17.708	0					15	5	4	0	0	0	0.0010491	1	4983	4983		181.87	58.666	1	6657700			21777	6559	14108	14164	22096	22096					0.026368667659426137
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.2958374023438	2	554.294973	1106.57539	4.5181	0.0025044	-2.6641	-0.0014767	1.854	0.0010277	554.2936056993142	17.315	0.10016	17.315	17.254	17.354	0					8	3	3	0	0	0	0.011683	1	4314	4314		136.52	43.372	1	244400			21778	6559	14108	14164	22097	22097					0.026368667659426137
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2955322265625	2	554.294973	1106.57539	0.51108	0.00028329	-0.16891	-9.3627E-05	0.34217	0.00018966	554.2951039480043	17.559	0.21869	17.559	17.449	17.668	0					12	4	4	0	0	0	0.0005196	1	5222	5222		187.16	77.677	1	2760800			21779	6559	14108	14164	22098	22098					0.026368667659426137
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.2964477539062	2	554.294973	1106.57539	1.7438	0.00096659	0.68888	0.00038184	2.4327	0.0013484	554.2952947672164	17.357	0.1199	17.357	17.281	17.401	0					7	3	3	0	0	0	0.0069915	1	4299	4299		158.47	37.602	1	374230			21780	6559	14108	14164	22099	22099					0.026368667659426137
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.2962036132812	2	554.294973	1106.57539	1.1377	0.00063061	1.079	0.00059807	2.2167	0.0012287	554.295622517965	17.34	0.11904	17.34	17.27	17.389	0					5	3	2	0	0	0	0.099683	1	4311	4311		95.483	19.313	1	321870			21781	6559	14108	14164	22100	22100					0.026368667659426137
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.29541015625	2	554.294973	1106.57539	0.9674	0.00053623	-0.51902	-0.00028769	0.44838	0.00024854	554.2948509808587	17.537	0.27022	17.537	17.43	17.7	0					15	5	5	0	0	0	9.8856E-10	1	5064	5064		211.86	66.708	1	2771400			21782	6559	14108	14164	22101	22101					0.026368667659426137
KSMNANTITK	10	Unmodified	_KSMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2950439453125	2	554.294973	1106.57539	1.8204	0.001009	-1.618	-0.00089687	0.20238	0.00011218	554.2941743154054	17.524	0.21912	17.524	17.413	17.632	0					9	4	3	0	0	0	0.0089743	1	5081	5081		147.3	26.435	1	3643800			21783	6559	14108	14164	22102	22102					0.026368667659426137
KSMTLLNTM	9	Oxidation (M)	_KSMTLLNTM(Oxidation (M))_		KSMTLLNTM(1)		KSM(-44)TLLNTM(44)	0	0	1		nc|ENSG00000248098|P12694-2|BCKDHA;ENSG00000248098|ENST00000269980|BCKDHA	nc|ENSG00000248098|P12694-2|BCKDHA	nc|ENSG00000248098|P12694-2|BCKDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7697143554688	2	527.767203	1053.51985	3.4737	0.0018333	1.4266	0.00075293	4.9003	0.0025862	527.7679455972976	35.357	0.1704	35.357	35.296	35.466	0					11	3	4	0	0	0	0.17854	1	13654	13654		64.207	8.7031	2	1225800			21784	7973	14109	14165	22103	22103		326			-0.004766827460116474
KSNCSSLSMGF	11	Unmodified	_KSNCSSLSMGF_					0	0	0			REV__ENST00000580335.1_1_18:67624287-67624371:-|nuORF	REV__ENST00000580335.1_1_18:67624287-67624371:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.7587890625	2	580.757366	1159.50018	-0.12905	-7.4948E-05	-0.12215	-7.0942E-05	-0.25121	-0.00014589	580.7575847562886	29.46	0.35404	29.46	29.357	29.711	0					45	13	5	0	0	0	0.40479	1	9563	9563		51.193	8.3284	1	1665100	+		21785	20448	14110	14166	22104	22104					-0.07319058756752383
KSNCSSLSMGF	11	Unmodified	_KSNCSSLSMGF_					0	0	0			REV__ENST00000580335.1_1_18:67624287-67624371:-|nuORF	REV__ENST00000580335.1_1_18:67624287-67624371:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.757568359375	2	580.757366	1159.50018	1.5101	0.00087698	-2.3357	-0.0013565	-0.82564	-0.0004795	580.756312328219	29.708	1.1827	29.708	29.599	30.782	0					68	25	6	0	0	0	0.37057	1	11016	11016		54.722	5.2808	1	16643000	+		21786	20448	14110	14166	22105	22105					-0.07319058756752383
KSNCSSLSMGF	11	Unmodified	_KSNCSSLSMGF_					0	0	0			REV__ENST00000580335.1_1_18:67624287-67624371:-|nuORF	REV__ENST00000580335.1_1_18:67624287-67624371:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.259765625	2	580.757366	1159.50018	-1.692	-0.00098267	1.2814	0.00074417	-0.41067	-0.0002385	580.7585068588678	29.498	0.32644	29.498	29.367	29.694	0					24	8	4	0	0	0	0.29191	1	9896	9896		63.534	15.618	1	1954100	+		21787	20448	14110	14166	22106	22106					-0.07319058756752383
KSNEGSLLI	9	Unmodified	_KSNEGSLLI_					0	0	0		nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7712707519531	2	480.771657	959.528761	-0.63768	-0.00030658	-0.24252	-0.0001166	-0.8802	-0.00042317	480.77156236454726	18.036	0.2103	18.036	17.931	18.142	0					8	4	3	0	0	0	0.47038	1	5332	5332		35.618	2.8059	1	332980			21788	11636	14111	14167	22107	22107					0.04737750206345481
KSNEWQRRT	9	Unmodified	_KSNEWQRRT_					0	0	0			REV__ENST00000468758.1_1_2:134877617-135010711:+|nuORF	REV__ENST00000468758.1_1_2:134877617-135010711:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.81494140625	2	602.81271	1203.61087	3.0603	0.0018448	0.22975	0.0001385	3.29	0.0019833	602.8127888003139	17.759	1.1036	17.759	17.649	18.752	0					58	22	4	0	0	0	0.1115	1	5172	5172		76.774	1.7308	1	11411000	+		21789	19445	14112	14168	22108	22108					0.017206653379844283
KSNHEKRVV	9	Unmodified	_KSNHEKRVV_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.8155517578125	2	548.814722	1095.61489	1.8443	0.0010122	-1.4663	-0.00080474	0.37793	0.00020741	548.8145272230154	11.978	0.068917	11.978	11.948	12.016	0					4	2	2	0	0	0	0.25716	1	2435	2435		54.776	3.5836	1	70584	+		21790	13150	14113	14169	22109	22109					0.0709075483171091
KSNISVFTPPD	11	Unmodified	_KSNISVFTPPD_					0	0	0		PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant;PTPRQ|p.Y1402Lfs*5|1|0.3|ENSG00000139304|chr12:80549654-80549654|A/-|frameshift_variant;PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant;PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant;ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ;PTPRQ|p.Q791Kfs*18|1|0.3|ENSG00000139304|chr12:80506122-80506122|C/-|frameshift_variant	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.2120666503906	3	402.211794	1203.61355	0.16314	6.5615E-05	0.61177	0.00024606	0.77491	0.00031168	402.21202281001433	17.613	0.77868	17.613	17.48	18.259	0					38	18	4	0	0	0	0.39337	1	4406	4406		52.167	5.7104	1	2212000			21791	4319	14114	14170	22110	22110					0.01989075952269559
KSNISVFTPPD	11	Unmodified	_KSNISVFTPPD_					0	0	0		PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant;PTPRQ|p.Y1402Lfs*5|1|0.3|ENSG00000139304|chr12:80549654-80549654|A/-|frameshift_variant;PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant;PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant;ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ;PTPRQ|p.Q791Kfs*18|1|0.3|ENSG00000139304|chr12:80506122-80506122|C/-|frameshift_variant	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2121276855469	3	402.211794	1203.61355	-0.59654	-0.00023994	1.2268	0.00049342	0.63023	0.00025348	402.2123813054489	17.743	1.0537	17.743	17.632	18.685	0					71	21	6	0	0	0	0.38061	1	5165	5165		53.597	7.1401	1	26680000			21792	4319	14114	14170	22111	22111					0.01989075952269559
KSNISVFTPPD	11	Unmodified	_KSNISVFTPPD_					0	0	0		PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant;PTPRQ|p.Y1402Lfs*5|1|0.3|ENSG00000139304|chr12:80549654-80549654|A/-|frameshift_variant;PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant;PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant;ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ;PTPRQ|p.Q791Kfs*18|1|0.3|ENSG00000139304|chr12:80506122-80506122|C/-|frameshift_variant	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	PTPRQ|p.K1365Rfs*5|1|0.42|ENSG00000139304|chr12:80549539-80549539|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2120666503906	3	402.211794	1203.61355	0.52905	0.00021279	0.27436	0.00011035	0.80341	0.00032314	402.2118933286311	17.776	1.0544	17.776	17.615	18.669	0					67	21	6	0	0	0	0.36734	1	5176	5176		55.084	5.5479	1	13274000			21793	4319	14114	14170	22112	22112					0.01989075952269559
KSNLKPLKN	9	Unmodified	_KSNLKPLKN_					0	0	0			REV__TNFAIP3|p.Q415K|1|0.11|ENSG00000118503|chr6:137878688-137878688|C/A|missense_variant	REV__TNFAIP3|p.Q415K|1|0.11|ENSG00000118503|chr6:137878688-137878688|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3248291015625	2	521.324391	1040.63423	0.37941	0.00019779	0.25855	0.00013479	0.63796	0.00033258	521.3245073101746	27.772	0.21668	27.772	27.662	27.878	0					7	4	2	0	0	0	0.13267	1	9990	9990		71.877	2.2498	1	343090	+		21794	14221	14115	14171	22113	22113					0.11553711122587629
KSNLPPRPMM	10	Oxidation (M)	_KSNLPPRPM(Oxidation (M))M_		KSNLPPRPM(0.5)M(0.5)		KSNLPPRPM(0)M(0)	0	0	1		ENST00000374601.7_1_1:23730426-23730582:-|nuORF	ENST00000374601.7_1_1:23730426-23730582:-|nuORF	ENST00000374601.7_1_1:23730426-23730582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.2087097167969	3	396.207221	1185.59983	-0.64276	-0.00025467	3.4466	0.0013656	2.8039	0.0011109	396.2089427068726	17.743	0.36071	17.743	17.683	18.044	0					16	7	3	0	0	0	0.39827	1	5185	5185		56.434	8.7765	2	543090			21795	9014	14116	14172	22114	22114		360;361			0.014458036478345093
KSNNTAYLIY	10	Unmodified	_KSNNTAYLIY_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.2085266113281	3	396.208273	1185.60299	0.099347	3.9362E-05	0.064027	2.5368E-05	0.16337	6.473E-05	396.2085261862942	17.76	0.32005	17.76	17.651	17.971	0					10	6	2	0	0	0	0.46128	1	5342	5342		49.536	1.5765	1	862610			21796	4213	14117	14173	22115	22115					0.017610932978641358
KSNPTFYL	8	Unmodified	_KSNPTFYL_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;ACAD11|p.W537Mfs*57|1|0.25|ENSG00000240303|chr3:132603241-132603242|-/T|frameshift_variant;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.25396728515625	2	485.255643	968.496732	-0.091561	-4.4431E-05	-4.3165	-0.0020946	-4.4081	-0.0021391	485.25318011753905	26.335	0.30861	26.335	26.185	26.493	0					10	6	2	0	0	0	0.68754	1	9401	9401		35.201	8.5078	1	136810			21797	31	14118	14174	22116	22116					0.011223825231923001
KSNSFLKAL	9	Unmodified	_KSNSFLKAL_					0	0	0		STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.062	1	51.062	50.562	51.562	0								0	0	0	0.37821	1	19039	19039		12.812	1.7149	1				21798	22496	14119	14175	22117	22117					0.07810333339955378
KSNSFLKAL	9	Unmodified	_KSNSFLKAL_					0	0	0		STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5340576171875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.978	1	53.978	53.478	54.478	0								0	0	0	0.35899	1	19650	19650		17.468	0.75062	1				21799	22496	14119	14175	22118	22118					0.07810333339955378
KSNSFLKAL	9	Unmodified	_KSNSFLKAL_					0	0	0		STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.848	1	29.848	29.348	30.348	0								0	0	0	0.3428	1	10983	10983		20.837	0	1				21800	22496	14119	14175	22119	22119					0.07810333339955378
KSNSFLKAL	9	Unmodified	_KSNSFLKAL_					0	0	0		STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.534423828125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.759	1	52.759	52.259	53.259	0								0	0	0	0.3119	1	20436	20436		26.063	0	1				21801	22496	14119	14175	22120	22120					0.07810333339955378
KSNSLPCIRSS	11	Unmodified	_KSNSLPCIRSS_					0	0	0			REV__sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1	REV__sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	397.874755859375	3	397.876529	1190.60776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.231	1	17.231	16.731	17.731	0								0	0	0	0.43372	1	4071	4071		29.551	2.5034	1		+		21802	21558	14120	14176	22121	22121					0.02007654168960471
KSNSYRHRE	9	Unmodified	_KSNSYRHRE_					0	0	0		ENSG00000196427|ENST00000415641|NBPF4;ENSG00000186086|ENST00000495380|NBPF6;nc|ENSG00000186086|Q5VWK0-2|NBPF6;nc|ENSG00000243967|Q86XG9|NBPF5P	ENSG00000196427|ENST00000415641|NBPF4	ENSG00000196427|ENST00000415641|NBPF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	588.79931640625	2	588.79706	1175.57957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.929	1	16.929	16.429	17.429	0								0	0	0	0.22284	1	4148	4148		47.657	11.211	1				21803	7122	14121	14177	22122	22122					-0.0011990769608019036
KSNSYRHRE	9	Unmodified	_KSNSYRHRE_					0	0	0		ENSG00000196427|ENST00000415641|NBPF4;ENSG00000186086|ENST00000495380|NBPF6;nc|ENSG00000186086|Q5VWK0-2|NBPF6;nc|ENSG00000243967|Q86XG9|NBPF5P	ENSG00000196427|ENST00000415641|NBPF4	ENSG00000196427|ENST00000415641|NBPF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7992553710938	2	588.79706	1175.57957	3.1861	0.001876	0.52952	0.00031178	3.7157	0.0021878	588.7973988469281	17.115	1.4978	17.115	16.957	18.454	0					65	30	5	0	0	0	0.028876	1	4863	4863		110.12	110.12	1	5180800			21804	7122	14121	14177	22123	22123					-0.0011990769608019036
KSNWRMVR	8	Unmodified	_KSNWRMVR_					0	0	0			REV__ENSG00000153012|ENST00000382114|LGI2	REV__ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7943725585938	2	538.792735	1075.57092	0.30057	0.00016195	3.943	0.0021245	4.2436	0.0022864	539.2959850413026	25.484	0.36354	25.484	25.222	25.586	0					14	7	2	0	0	0	0.54629	1	9039	9039		55.504	2.1528	1	310530	+		21805	15527	14122	14178	22124	22124					0.03615447133711314
KSPEIQRAL	9	Unmodified	_KSPEIQRAL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.3064575195312	2	521.306198	1040.59784	1.5228	0.00079382	-1.1361	-0.00059224	0.38669	0.00020158	521.3057739828255	23.607	0.3066	23.607	23.444	23.751	0					16	7	4	0	0	0	0.098791	1	7849	7849		79.713	17.605	1	1334600			21806	6489	14123	14179	22125	22125					0.07916834225898128
KSPEIQRAL	9	Unmodified	_KSPEIQRAL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.3064575195312	2	521.306198	1040.59784	1.7372	0.00090559	-1.6864	-0.00087913	0.050755	2.6459E-05	521.3055984108418	23.553	0.26645	23.553	23.445	23.711	0					11	5	3	0	0	0	0.032052	1	8144	8144		107.01	21.847	1	1267600			21807	6489	14123	14179	22126	22126					0.07916834225898128
KSPEIQRAL	9	Unmodified	_KSPEIQRAL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3063354492188	2	521.306198	1040.59784	0.37795	0.00019703	0.33981	0.00017715	0.71776	0.00037417	521.3062489045009	23.544	0.1677	23.544	23.435	23.602	0					6	3	2	0	0	0	0.28897	1	8012	8012		51.193	6.8155	1	292760			21808	6489	14123	14179	22127	22127					0.07916834225898128
KSPEIQRAL	9	Unmodified	_KSPEIQRAL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.306396484375	2	521.306198	1040.59784	1.6241	0.00084663	-1.7242	-0.00089882	-0.10011	-5.2189E-05	521.3056407942975	23.526	0.26483	23.526	23.418	23.683	0					12	5	3	0	0	0	0.063823	1	8004	8004		90.37	8.1293	1	1304600			21809	6489	14123	14179	22128	22128					0.07916834225898128
KSPEKDVPM	9	Unmodified	_KSPEKDVPM_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.765625	2	515.765517	1029.51648	0.2226	0.00011481	0.074805	3.8582E-05	0.2974	0.00015339	515.7653990324497	20.555	0.21029	20.555	20.425	20.636	0					10	6	2	0	0	0	0.40353	1	5547	5547		41.427	0.64845	1	134600			21810	1361	14124	14180	22129	22129					0.0029039047165042575
KSPEKDVPM	9	Unmodified	_KSPEKDVPM_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7655639648438	2	515.765517	1029.51648	-0.078955	-4.0722E-05	0.51411	0.00026516	0.43516	0.00022444	515.7658084350529	20.59	0.3233	20.59	20.438	20.761	0					23	10	3	0	0	0	0.14578	1	5765	5765		68.846	17.511	1	388540			21811	1361	14124	14180	22130	22130					0.0029039047165042575
KSPEKDVPM	9	Unmodified	_KSPEKDVPM_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.765869140625	2	515.765517	1029.51648	1.4389	0.00074215	-1.8647	-0.00096174	-0.42575	-0.00021959	515.7648914333134	20.767	0.56625	20.767	20.462	21.028	0					28	11	4	0	0	0	0.02953	1	6793	6793		109.48	43.049	1	2845100			21812	1361	14124	14180	22131	22131					0.0029039047165042575
KSPEKDVPM	9	Unmodified	_KSPEKDVPM_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7657470703125	2	515.765517	1029.51648	0.74516	0.00038433	-0.46833	-0.00024155	0.27684	0.00014278	515.7651761112019	20.655	0.32059	20.655	20.521	20.842	0					14	7	3	0	0	0	0.035062	1	5819	5819		104.06	34.429	1	229170			21813	1361	14124	14180	22132	22132					0.0029039047165042575
KSPEKDVPM	9	Unmodified	_KSPEKDVPM_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7659912109375	2	515.765517	1029.51648	1.5135	0.00078063	-1.0137	-0.00052282	0.49986	0.00025781	515.7651553439588	20.785	0.36746	20.785	20.575	20.943	0					19	7	4	0	0	0	0.056004	1	6645	6645		93.143	35.332	1	1774100			21814	1361	14124	14180	22133	22133					0.0029039047165042575
KSPFTTHV	8	Unmodified	_KSPFTTHV_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7478332519531	2	458.747985	915.481417	-0.96331	-0.00044192	0.95271	0.00043705	-0.010602	-4.8636E-06	458.748218108622	25.062	0.41623	25.062	24.873	25.289	0					18	13	2	0	0	0	0.66372	1	7756	7756		38.806	6.8513	1	100750			21815	5546	14125	14181	22134	22134					0.02029515725996589
KSPKEQLEQ	9	Unmodified	_KSPKEQLEQ_					0	0	0			REV__ENSG00000177511|ENST00000324000|ST8SIA3	REV__ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7954711914062	2	543.793121	1085.57169	1.9927	0.0010836	1.5126	0.00082255	3.5054	0.0019062	543.7939775487625	30.482	2.7945	30.482	30.131	32.926	0					126	56	5	0	0	0	0.056004	1	11251	11251		93.143	5.4468	1	97565000	+		21816	16697	14126	14182	22135	22135					0.032325202637593975
KSPPFLAQN	9	Unmodified	_KSPPFLAQN_					0	0	0			REV__nc|ENSG00000006757|P41247-2|PNPLA4	REV__nc|ENSG00000006757|P41247-2|PNPLA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2744445800781	2	501.274367	1000.53418	0.6757	0.00033871	-1.0169	-0.00050976	-0.34122	-0.00017105	501.2738021523731	36.338	0.18459	36.338	36.285	36.469	0					8	5	2	0	0	0	0.42902	1	13700	13700		39.253	0.44669	1	73797	+		21817	12862	14127	14183	22136	22136					0.033934737887989286
KSPRSPQL	8	Unmodified	_KSPRSPQL_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7666931152344	2	456.766709	911.518865	-0.38871	-0.00017755	-0.49512	-0.00022616	-0.88383	-0.0004037	456.76652781055446	18.045	0.26504	18.045	17.868	18.133	0					10	7	2	0	0	0	0.67394	1	4430	4430		37.159	1.5408	1	73720			21818	5802	14128	14184	22137	22137					0.05956606991605895
KSPVSKSPV	9	Unmodified	_KSPVSKSPV_					0	0	0		nc|ENSG00000104722|P07197-2|NEFM;NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM	nc|ENSG00000104722|P07197-2|NEFM	nc|ENSG00000104722|P07197-2|NEFM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7762756347656	2	464.776742	927.538931	-0.44033	-0.00020466	-0.056576	-2.6295E-05	-0.49691	-0.00023095	464.77674633470144	26.867	0.30474	26.867	26.742	27.046	0					21	10	3	0	0	0	0.53064	1	8187	8187		29.17	1.2878	1	496960			21819	2303	14129	14185	22138	22138					0.07226357931574512
KSQAKDGL	8	Unmodified	_KSQAKDGL_					0	0	0			REV__ENST00000431775.1_1_20:1141365-1141542:+|nuORF	REV__ENST00000431775.1_1_20:1141365-1141542:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.7377014160156	2	423.737617	845.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.736	1	32.736	32.236	33.236	0								0	0	0	1.7419	1	10600	10600		35.618	5.1146	1		+		21820	19170	14130	14186	22139	22139					0.03176925346326698
KSQEAIKK	8	Unmodified	_KSQEAIKK_					0	0	0		nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43	nc|ENSG00000197748|Q8NDM7-3|CFAP43	nc|ENSG00000197748|Q8NDM7-3|CFAP43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.28192138671875	2	466.282192	930.549831	-0.1349	-6.29E-05	-0.26793	-0.00012493	-0.40283	-0.00018783	466.28206354618897	17.659	0.26893	17.659	17.55	17.819	0					10	5	3	0	0	0	0.23895	1	5274	5274		134.81	5.3895	1	4020600			21821	493	14131	14187	22140	22140					0.08177760305852644
KSQKEITK	8	Unmodified	_KSQKEITK_					0	0	0		tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2872009277344	2	481.287474	960.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.939	1	18.939	18.439	19.439	0								0	0	0	1.7419	1	5902	5902		47.657	0	1				21822	23045	14132	14188	22141	22141					0.07853742960264753
KSQPPNQSR	9	Unmodified	_KSQPPNQSR_					0	0	0			REV__CELF2|p.A423Gfs*31|1|0.4|ENSG00000048740|chr10:11325842-11325843|-/G|frameshift_variant	REV__CELF2|p.A423Gfs*31|1|0.4|ENSG00000048740|chr10:11325842-11325843|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2760620117188	2	521.275429	1040.53631	1.5041	0.00078406	-0.5907	-0.00030792	0.91342	0.00047614	521.2752327693297	14.866	0.093016	14.866	14.82	14.913	0					4	2	2	0	0	0	0.27249	1	3731	3731		55.504	2.1528	1	318140	+		21823	12414	14133	14189	22142	22142					0.0176590252663118
KSQQALVQK	9	Unmodified	_KSQQALVQK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000567372.1_1_18:65945123-65945423:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3071899414062	2	515.306198	1028.59784	-0.11984	-6.1755E-05	0.61124	0.00031498	0.4914	0.00025322	515.3065021312104	15.239	0.1423	15.239	15.178	15.321	0					7	4	2	0	0	0	0.063171	1	3425	3425		90.601	8.2958	1	843920			21824	2982	14134	14190	22143	22143					0.08468834225891442
KSQQALVQK	9	Unmodified	_KSQQALVQK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000567372.1_1_18:65945123-65945423:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3065185546875	2	515.306198	1028.59784	1.4107	0.00072693	-0.87327	-0.00045	0.53741	0.00027693	515.305671323998	15.475	0.31951	15.475	15.417	15.736	0					14	6	4	0	0	0	0.026848	1	4247	4247		112.11	37.852	1	5659500			21825	2982	14134	14190	22144	22144					0.08468834225891442
KSQRSATKGRV	11	Unmodified	_KSQRSATKGRV_					0	0	0			REV__AVPR1A|p.F351Lfs*19|4|0.28|ENSG00000166148|chr12:63147563-63147563|A/-|frameshift_variant	REV__AVPR1A|p.F351Lfs*19|4|0.28|ENSG00000166148|chr12:63147563-63147563|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	609.3557739257812	2	609.357285	1216.70002	-1.9604	-0.0011946	-1.1622	-0.00070822	-3.1226	-0.0019028	609.3567067001542	19.351	0.14103	19.351	19.262	19.403	0					7	3	3	0	0	0	0.33002	1	5227	5227		42.338	1.5599	1	460040	+		21826	12264	14135	14191	22145	22145					0.10033500297504361
KSQTDSPD	8	Unmodified	_KSQTDSPD_					0	0	0		ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.19879150390625	2	439.198522	876.38249	-0.36576	-0.00016064	-0.069445	-3.05E-05	-0.4352	-0.00019114	439.19891952061187	21.07	1.1624	21.07	20.529	21.692	0					50	23	4	0	0	0	0.52345	1	6827	6827		57.811	8.3697	1	878480			21827	3819	14136	14192	22146	22146					-0.06064552029567949
KSQTLLGK	8	Unmodified	_KSQTLLGK_					0	0	0		ULK1|p.H274Ifs*109|2|0.29|ENSG00000177169|chr12:131910259-131910259|T/-|frameshift_variant;ULK1|p.T575Rfs*72|1|0.43|ENSG00000177169|chr12:131915998-131915998|C/-|frameshift_variant;ULK1|p.S638Afs*9|1|0.32|ENSG00000177169|chr12:131916426-131916426|C/-|frameshift_variant;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant;ENSG00000177169|ENST00000321867|ULK1	ULK1|p.H274Ifs*109|2|0.29|ENSG00000177169|chr12:131910259-131910259|T/-|frameshift_variant	ULK1|p.H274Ifs*109|2|0.29|ENSG00000177169|chr12:131910259-131910259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7716369628906	2	437.77146	873.528367	0.86506	0.0003787	-1.1207	-0.00049061	-0.25564	-0.00011191	437.77094460650693	17.61	0.11509	17.61	17.534	17.649	0					8	3	3	0	0	0	0.2451	1	4223	4223		110.12	2.0324	1	393810			21828	6650	14137	14193	22147	22147					0.08654375277149029
KSQTLLGK	8	Unmodified	_KSQTLLGK_					0	0	0		ULK1|p.H274Ifs*109|2|0.29|ENSG00000177169|chr12:131910259-131910259|T/-|frameshift_variant;ULK1|p.T575Rfs*72|1|0.43|ENSG00000177169|chr12:131915998-131915998|C/-|frameshift_variant;ULK1|p.S638Afs*9|1|0.32|ENSG00000177169|chr12:131916426-131916426|C/-|frameshift_variant;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant;ENSG00000177169|ENST00000321867|ULK1	ULK1|p.H274Ifs*109|2|0.29|ENSG00000177169|chr12:131910259-131910259|T/-|frameshift_variant	ULK1|p.H274Ifs*109|2|0.29|ENSG00000177169|chr12:131910259-131910259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7713623046875	2	437.77146	873.528367	0.29758	0.00013027	-0.48938	-0.00021424	-0.1918	-8.3966E-05	437.77119398228353	17.664	0.15963	17.664	17.609	17.768	0					5	3	2	0	0	0	0.25798	1	4461	4461		139.97	7.2126	1	385680			21829	6650	14137	14193	22148	22148					0.08654375277149029
KSRAWVLE	8	Unmodified	_KSRAWVLE_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000471215.1_1_7:73111917-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.8299255371094	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.931	1	12.931	12.431	13.431	0								0	0	0	1.7419	1	2876	2876		37.159	1.5408	1				21830	1474	14138	14194	22149	22149					0.0558918002569726
KSRCTELEK	9	Unmodified	_KSRCTELEK_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;GCC2|p.L712Cfs*16|1|0.49|ENSG00000135968|chr2:108471458-108471458|T/-|frameshift_variant;GCC2|p.E105Dfs*5|1|0.08|ENSG00000135968|chr2:108469077-108469078|-/TTTATTT|frameshift_variant;GCC2|p.N174Ifs*10|1|0.04|ENSG00000135968|chr2:108469849-108469850|-/TTTTCAATTTCTTTCACAT|frameshift_variant	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.1939392089844	3	365.193858	1092.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.628	1	12.628	12.128	13.128	0								0	0	0	0.22075	1	2733	2733		63.426	18.404	1				21831	4042	14139	14195	22150	22150					0.01716580248921673
KSRDTALK	8	Unmodified	_KSRDTALK_					0	0	0		BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant;BLM|p.G1220Pfs*25|1|0.09|ENSG00000197299|chr15:90804264-90804265|-/ACCTTTA|frameshift_variant;ENSG00000197299|ENST00000355112|BLM;BLM|p.N515Mfs*16|2|0.38|ENSG00000197299|chr15:90760909-90760909|A/-|frameshift_variant	BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7722473144531	2	459.771991	917.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.62	1	19.62	19.12	20.12	0								0	0	0	1.7419	1	5363	5363		64.207	0	1				21832	303	14140	14196	22151	22151					0.06736589646038738
KSRGRERG	8	Unmodified	_KSRGRERG_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2716064453125	2	473.270481	944.52641	2.4066	0.001139	-0.2395	-0.00011335	2.1671	0.0010256	473.27039277194245	14.583	0.21962	14.583	14.423	14.643	0					6	4	2	0	0	0	0.64144	1	3673	3673		42.396	42.396	1	1309700	+		21833	17388	14141	14197	22152	22152					0.051927593118989535
KSRLRNTY	8	Unmodified	_KSRLRNTY_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2974853515625	2	519.296165	1036.57778	4.8833	0.0025359	-0.73467	-0.00038151	4.1486	0.0021543	519.2955963084366	40.769	0.18938	40.769	40.682	40.871	0					13	8	2	0	0	0	0.37378	1	13613	13613		73.975	0	1	69178	+		21834	14122	14142	14198	22153	22153					0.06095083285936198
KSRMAVCNTL	10	Oxidation (M)	_KSRM(Oxidation (M))AVCNTL_		KSRM(1)AVCNTL		KSRM(80)AVCNTL	0	0	1			REV__ENST00000420836.2_1_12:68429646-68429838:+|nuORF	REV__ENST00000420836.2_1_12:68429646-68429838:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7908325195312	2	569.789001	1137.56345	3.4344	0.0019569	-0.26123	-0.00014885	3.1732	0.0018081	569.7888661215769	33.424	0.367	33.424	33.317	33.684	0					23	7	4	0	0	0	0.19191	1	12691	12691		80.455	80.455	1	6514400	+		21835	19074	14143	14199	22154	22154		699			0.00016926751118262473
KSRNCIVDGR	10	Carbamidomethyl (C)	_KSRNC(Carbamidomethyl (C))IVDGR_	KSRNC(1)IVDGR		KSRNC(52)IVDGR		0	1	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.21234130859375	3	402.212023	1203.61424	0.94846	0.00038148	-0.67152	-0.00027009	0.27694	0.00011139	402.21187053330004	17.78	1.1194	17.78	17.696	18.816	0					82	26	4	0	0	0	0.44292	1	5242	5242		51.528	13.928	1	27551000			21836	3795	14144	14200	22155	22155	165				0.020575921203317193
KSRPLKSQ	8	Unmodified	_KSRPLKSQ_					0	0	0		CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant;CYLC1|p.N291Efs*7|1|0.24|ENSG00000183035|chrX:83873571-83873572|-/A|frameshift_variant;CYLC1|p.D425Gfs*2|1|0.26|ENSG00000183035|chrX:83873972-83873973|-/A|frameshift_variant;CYLC1|p.K424Rfs*69|2|0.17|ENSG00000183035|chrX:83873973-83873973|A/-|frameshift_variant;ENSG00000183035|ENST00000329312|CYLC1	CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant	CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2873840332031	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.147	1	13.147	12.647	13.647	0								0	0	0	1.7419	1	2979	2979		19.104	0	1				21837	725	14145	14201	22156	22156					0.0874858239999412
KSRQAVSR	8	Unmodified	_KSRQAVSR_					0	0	0		RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L;RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant	RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant	RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2769775390625	2	466.275232	930.535912	4.0456	0.0018864	-1.4211	-0.00066261	2.6246	0.0012238	466.27462389552727	31.444	0.18773	31.444	31.352	31.54	0					10	7	2	0	0	0	0.65148	1	10413	10413		40.778	1.5253	1	101210			21838	2245	14146	14202	22157	22157					0.06786527597409986
KSRRALKW	8	Unmodified	_KSRRALKW_					0	0	0		ENSG00000196169|ENST00000389916|KIF19;nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8248901367188	2	522.824892	1043.63523	1.0466	0.00054719	-1.4185	-0.00074161	-0.37186	-0.00019442	522.8239469812461	27.33	0.26929	27.33	27.22	27.49	0					9	5	3	0	0	0	0.6088	1	9900	9900		47.657	1.2006	1	164600			21839	7334	14147	14203	22158	22158					0.11515970282152921
KSRTVMPH	8	Unmodified	_KSRTVMPH_					0	0	0			REV__sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	REV__sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2611999511719	2	478.260736	954.50692	-0.051698	-2.4725E-05	0.91439	0.00043732	0.86269	0.00041259	478.26124965805434	17.07	0.16614	17.07	17.006	17.172	0					15	5	4	0	0	0	0.66372	1	3991	3991		38.806	38.806	1	979710	+		21840	21561	14148	14204	22159	22159					0.027846669767768617
KSSAEVTPDL	10	Unmodified	_KSSAEVTPDL_					0	0	0		ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000511830.2_1_5:69390488-69422514:-|nuORF	ENST00000511830.2_1_5:69390488-69422514:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7688598632812	2	523.771854	1045.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.937	1	23.937	23.437	24.437	0								0	0	0	0.24873	1	8314	8314		58.23	7.0372	1				21841	7982	14149	14205	22160	22160					0.008211251355305649
KSSAILKAPD	10	Unmodified	_KSSAILKAPD_					0	0	0			REV__tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	REV__tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.300537109375	2	515.300581	1028.58661	1.4103	0.00072671	-0.89961	-0.00046357	0.51066	0.00026314	515.300079055458	36.451	0.36481	36.451	36.35	36.714	0					24	10	3	0	0	0	0.36647	1	14189	14189		59.931	5.2084	1	1242400	+		21842	22054	14150	14206	22161	22161					0.07346012131756652
KSSARVVEK	9	Unmodified	_KSSARVVEK_					0	0	0		ENST00000426367.1_1_X:123093242-123095163:-|nuORF	ENST00000426367.1_1_X:123093242-123095163:-|nuORF	ENST00000426367.1_1_X:123093242-123095163:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2979431152344	2	502.298373	1002.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.619	1	12.619	12.119	13.119	0								0	0	0	0.13425	1	2729	2729		63.534	8.0296	1				21843	9445	14151	14207	22162	22162					0.08100547708852446
KSSDFAVLK	9	Unmodified	_KSSDFAVLK_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.78240966796875	2	497.782025	993.549496	1.5287	0.00076094	-0.55404	-0.00027579	0.97461	0.00048514	497.7815925704335	26.191	0.1223	26.191	26.12	26.243	0					6	4	2	0	0	0	0.13726	1	7928	7928		70.816	1.1886	1	53366			21844	2209	14152	14208	22163	22163					0.05246340585995313
KSSDFAVLK	9	Unmodified	_KSSDFAVLK_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7820129394531	2	497.782025	993.549496	0.561	0.00027926	-0.85757	-0.00042688	-0.29657	-0.00014763	497.78162498527666	26.472	0.2362	26.472	26.379	26.615	0					13	5	4	0	0	0	0.02429	1	9125	9125		114.89	38.12	1	731560			21845	2209	14152	14208	22164	22164					0.05246340585995313
KSSDFAVLK	9	Unmodified	_KSSDFAVLK_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.78173828125	2	497.782025	993.549496	-0.026113	-1.2998E-05	-0.53854	-0.00026808	-0.56465	-0.00028107	497.7817985024009	26.435	0.31842	26.435	26.326	26.644	0					9	6	2	0	0	0	0.021015	1	9470	9470		120.31	24.491	1	976200			21846	2209	14152	14208	22165	22165					0.05246340585995313
KSSDVFSSK	9	Unmodified	_KSSDVFSSK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7533264160156	2	492.753464	983.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.026	1	18.026	17.526	18.526	0								0	0	0	0.29356	1	4639	4639		36.447	2.2742	1				21847	6165	14153	14209	22166	22166					-3.126690364751994E-05
KSSDVFSSK	9	Unmodified	_KSSDVFSSK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7530822753906	2	492.753464	983.492375	-0.05511	-2.7155E-05	-0.66684	-0.00032859	-0.72195	-0.00035574	492.75307037915053	18.267	0.17088	18.267	18.156	18.327	0					6	3	2	0	0	0	0.0082431	1	5589	5589		144.77	37.888	1	606860			21848	6165	14153	14209	22167	22167					-3.126690364751994E-05
KSSDVFSSK	9	Unmodified	_KSSDVFSSK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7530517578125	2	492.753464	983.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.1	1	18.1	17.6	18.6	0								0	0	0	0.19616	1	4656	4656		51.528	5.5555	1				21849	6165	14153	14209	22168	22168					-3.126690364751994E-05
KSSENIGKVL	10	Unmodified	_KSSENIGKVL_					0	0	0		nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3169555664062	2	537.811313	1073.60807	-0.31451	-0.00016915	2.5784	0.0013867	2.2639	0.0012175	537.8123393239141	27.079	0.35231	27.079	26.9	27.253	0					19	12	2	0	0	0	0.64162	1	8544	8544		29.17	0	1	380240			21850	3173	14154	14210	22169	22169					0.07421397160487686
KSSGGLLK	8	Unmodified	_KSSGGLLK_					0	0	0		nc|ENSG00000124780|Q96T54-4|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2452392578125	2	395.245078	788.475603	0.41242	0.00016301	-1.0224	-0.00040411	-0.61001	-0.0002411	395.24474303016166	11.893	0.17948	11.893	11.804	11.983	0					8	5	2	0	0	0	0.28427	1	2385	2385		87.754	8.3033	1	1467200			21851	11507	14155	14211	22170	22170					0.07290417214335321
KSSIFPRT	8	Unmodified	_KSSIFPRT_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2;REV__nc|ENSG00000140299|Q12982-2|BNIP2	REV__nc|ENSG00000140299|Q12982-2|BNIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.27130126953125	2	468.269084	934.523616	-0.64313	-0.00030116	0.11501	5.3856E-05	-0.52812	-0.0002473	468.26916184329997	32.841	0.46334	32.841	32.656	33.119	0					27	12	3	0	0	0	0.69548	1	12162	12162		34.173	0.65696	1	2483600	+		21852	13837;21044	14156	14212	22171	22171					0.05373491134378128
KSSKIGKRV	9	Unmodified	_KSSKIGKRV_					0	0	0		PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant;nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL	PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant	PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2979431152344	2	501.824558	1001.63456	0.95994	0.00048172	-1.1116	-0.00055784	-0.15168	-7.6118E-05	501.8239702990795	11.938	2.1211	11.938	11.819	13.94	0					88	50	3	0	0	0	0.42902	1	2901	2901		39.253	3.6345	1	8683300			21853	5680	14157	14213	22172	22172					0.13381130842469702
KSSKPIMEK	9	Unmodified	_KSSKPIMEK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.L54Efs*15|1|0.25|ENSG00000114315|chr3:194136667-194136668|TC/-|frameshift_variant;ENST00000476918.1_1_3:193854169-193854699:+|nuORF	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.2977294921875	2	524.296985	1046.57942	1.4451	0.00075764	0.080809	4.2368E-05	1.5259	0.00080001	524.2970036843295	14.046	0.10012	14.046	13.998	14.099	0					7	5	2	0	0	0	0.082776	1	2836	2836		83.647	15.162	1	80970			21854	2841	14158	14214	22173	22173					0.05798956259673105
KSSKPIMEK	9	Unmodified	_KSSKPIMEK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.L54Efs*15|1|0.25|ENSG00000114315|chr3:194136667-194136668|TC/-|frameshift_variant;ENST00000476918.1_1_3:193854169-193854699:+|nuORF	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2978515625	2	524.296985	1046.57942	0.51927	0.00027225	-0.14137	-7.4121E-05	0.37789	0.00019813	524.2968866307234	14.316	0.16673	14.316	14.257	14.423	0					7	3	3	0	0	0	0.099758	1	3543	3543		79.489	17.382	1	344140			21855	2841	14158	14214	22174	22174					0.05798956259673105
KSSKSKSQL	9	Unmodified	_KSSKSKSQL_					0	0	0		ENSG00000204172|ENST00000452145|AGAP9;nc|ENSG00000204172|Q5VTM2|AGAP9	ENSG00000204172|ENST00000452145|AGAP9	ENSG00000204172|ENST00000452145|AGAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.79217529296875	2	496.790381	991.566209	2.8883	0.0014349	0.67378	0.00033473	3.5621	0.0017696	496.790745690379	40.384	0.46515	40.384	40.283	40.748	0					28	10	4	0	0	0	0.0792	1	16038	16038		84.916	84.916	1	3323400			21856	7675	14159	14215	22175	22175					0.07008841471940741
KSSLENIISK	10	Unmodified	_KSSLENIISK_					0	0	0		EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant;nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7	EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant	EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.825439453125	2	559.824421	1117.63429	1.8253	0.0010219	-0.29255	-0.00016378	1.5328	0.0008581	559.8243311297989	15.055	0.16834	15.055	14.945	15.113	0					8	3	3	0	0	0	0.44971	1	3898	3898		38.754	4.5811	1	697700			21857	884	14160	14216	22176	22176					0.08017666331943474
KSSNPNDGET	10	Unmodified	_KSSNPNDGET_					0	0	0			REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2322998046875	2	524.730717	1047.44688	0.11016	5.7802E-05	-0.95079	-0.00049891	-0.84064	-0.00044111	525.2322659997595	15.175	0.20942	15.175	15.113	15.322	0					6	4	2	0	0	0	0.60281	1	4106	4106		33.922	6.0394	1	650070	+		21858	21742	14161	14217	22177	22177					-0.0749439694341163
KSSQPLASKQE	11	Unmodified	_KSSQPLASKQE_					0	0	0		ENSG00000137309|ENST00000311487|HMGA1;nc|ENSG00000137309|P17096-3|HMGA1;nc|ENSG00000137309|P17096-2|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.3246459960938	2	601.822409	1201.63027	0.32744	0.00019706	-0.21503	-0.00012941	0.11242	6.7656E-05	601.822300589125	14.584	0.1942	14.584	14.503	14.697	0					19	8	4	0	0	0	0.16685	1	3174	3174		78.264	6.1682	1	1109100			21859	4158	14162	14218	22178	22178					0.03751576838226356
KSSSHQDLLFK	11	Unmodified	_KSSSHQDLLFK_					0	0	0		ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	645.344482421875	2	645.346052	1288.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.297	1	12.297	11.797	12.797	0								0	0	0	0.45674	1	2733	2733		17.468	0	1				21860	8463	14163	14219	22179	22179					0.044758561092066884
KSSSLFATI	9	Unmodified	_KSSSLFATI_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2684326171875	2	477.26875	952.522947	-2.8262	-0.0013489	4.1292	0.0019707	1.303	0.00062187	477.2706663991257	17.164	0.13057	17.164	17.097	17.227	0					7	4	2	0	0	0	0.45358	1	4227	4227		37.159	1.5408	1	226780	+		21861	14819	14164	14220	22180	22180					0.04478651694648761
KSSSLSAYGRT	11	Unmodified	_KSSSLSAYGRT_					0	0	0		DMTN|p.P291S|1|0.49|ENSG00000158856|chr8:22080215-22080215|C/T|missense_variant	DMTN|p.P291S|1|0.49|ENSG00000158856|chr8:22080215-22080215|C/T|missense_variant	DMTN|p.P291S|1|0.49|ENSG00000158856|chr8:22080215-22080215|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.802734375	2	578.801477	1155.5884	-0.097191	-5.6255E-05	3.1317	0.0018126	3.0345	0.0017564	578.8032373115619	31.617	0.21635	31.617	31.515	31.732	0					15	8	3	0	0	0	0.38061	1	10468	10468		53.597	0.50791	1	104470			21862	806	14165	14221	22181	22181					0.01683021149688102
KSSSVTKIQ	9	Unmodified	_KSSSVTKIQ_					0	0	0			REV__nc|ENSG00000172159|A2A2Y4-3|FRMD3	REV__nc|ENSG00000172159|A2A2Y4-3|FRMD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.28472900390625	2	489.284931	976.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.739	1	12.739	12.239	13.239	0								0	0	0	0.30504	1	2940	2940		34.173	0	1		+		21863	16452	14166	14222	22182	22182					0.06609439097655923
KSSTAMADYC	10	Unmodified	_KSSTAMADYC_					0	0	0			REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3	REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7235717773438	2	538.722992	1075.43143	-0.20131	-0.00010845	1.1654	0.00062781	0.96405	0.00051936	538.7237353867416	19.561	0.31848	19.561	19.444	19.763	0					23	10	3	0	0	0	0.60076	1	5312	5312		34.173	0.65696	1	648540	+		21864	14117	14167	14223	22183	22183					-0.10326723056482479
KSSTPVPSK	9	Unmodified	_KSSTPVPSK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.76641845703125	2	465.766374	929.518196	0.47751	0.00022241	-0.78633	-0.00036625	-0.30882	-0.00014384	465.7658646453739	14.738	0.33448	14.738	14.456	14.79	0					12	8	2	0	0	0	0.31937	1	3650	3650		48.602	0.94422	1	198580			21865	877	14168	14224	22184	22184					0.05061767551910634
KSSTPVPSK	9	Unmodified	_KSSTPVPSK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7666015625	2	465.766374	929.518196	-0.49425	-0.0002302	0.41509	0.00019334	-0.079156	-3.6868E-05	465.76654310383566	14.617	0.16885	14.617	14.508	14.677	0					6	3	2	0	0	0	0.061298	1	3691	3691		91.265	19.97	1	246330			21866	877	14168	14224	22185	22185					0.05061767551910634
KSSVNSAVLK	10	Unmodified	_KSSVNSAVLK_					0	0	0		CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.T618Lfs*3|1|0.37|ENSG00000169607|chr2:112740978-112740978|T/-|frameshift_variant;ENSG00000169607|ENST00000302450|CKAP2L	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.806396484375	2	516.806031	1031.59751	1.2673	0.00065493	-0.33835	-0.00017486	0.92892	0.00048007	516.805908634374	25.065	0.13499	25.065	24.98	25.115	0					9	3	3	0	0	0	0.13022	1	8528	8528		88.177	0	1	2062100			21867	546	14169	14225	22186	22186					0.08297414506023415
KSSVNSAVLK	10	Unmodified	_KSSVNSAVLK_					0	0	0		CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.T618Lfs*3|1|0.37|ENSG00000169607|chr2:112740978-112740978|T/-|frameshift_variant;ENSG00000169607|ENST00000302450|CKAP2L	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.8064575195312	2	516.806031	1031.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.906	1	24.906	24.406	25.406	0								0	0	0	0.27346	1	7839	7839		51.193	8.7182	1				21868	546	14169	14225	22187	22187					0.08297414506023415
KSSVPRMTP	9	Unmodified	_KSSVPRMTP_					0	0	0		ENST00000338272.8_1_1:109637211-109637328:+|nuORF	ENST00000338272.8_1_1:109637211-109637328:+|nuORF	ENST00000338272.8_1_1:109637211-109637328:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7732238769531	2	501.773677	1001.5328	-0.32516	-0.00016316	-0.32912	-0.00016514	-0.65428	-0.0003283	501.7736695988884	19.26	0.52771	19.26	18.858	19.386	0					39	12	4	0	0	0	0.21263	1	5040	5040		60.118	12.461	1	1594400			21869	8714	14170	14226	22188	22188					0.0320951642838736
KSTAFPRTQ	9	Unmodified	_KSTAFPRTQ_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2830200195312	2	518.282723	1034.55089	0.2495	0.00012931	-2.2174	-0.0011492	-1.9679	-0.0010199	518.2815287836357	16.322	0.26688	16.322	16.2	16.466	0					7	5	2	0	0	0	0.41958	1	4498	4498		40.058	0.80534	1	118220			21870	7333	14171	14227	22189	22189					0.03499974674764417
KSTEEEHK	8	Unmodified	_KSTEEEHK_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.829833984375	3	329.829573	986.466889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.984	1	12.984	12.484	13.484	0								0	0	0	1.7419	1	2852	2852		26.693	2.1737	1				21871	4039	14172	14228	22190	22190					-0.026886012128102266
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.2325744628906	3	363.232641	1086.67609	0.46243	0.00016797	-0.58162	-0.00021126	-0.11919	-4.3294E-05	363.2325493163029	19.821	0.13774	19.821	19.736	19.873	0					9	4	3	0	0	0	0.1424	1	5188	5188		96.034	0	1	140680			21872	6067	14173	14229	22191	22191					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.3455810546875	2	544.345323	1086.67609	1.7988	0.00097918	-0.50462	-0.00027469	1.2942	0.00070449	544.3449360279149	19.805	0.13774	19.805	19.736	19.873	0					9	4	3	0	0	0	0.10506	1	5190	5190		78.264	0	1	142600			21873	6067	14173	14229	22192	22192					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.2325439453125	3	363.232641	1086.67609	0.73787	0.00026802	-0.85246	-0.00030964	-0.1146	-4.1626E-05	363.2322731152929	20.156	0.33785	20.156	20.064	20.402	0					21	7	4	0	0	0	0.078509	1	6197	6197		101.46	0	1	2696500			21874	6067	14173	14229	22193	22193					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.3458862304688	2	544.345323	1086.67609	1.8737	0.00102	-0.98481	-0.00053608	0.88891	0.00048387	544.3447928700338	20.156	0.19378	20.156	20.064	20.258	0					12	4	4	0	0	0	0.020674	1	6200	6200		120.87	0	1	1567400			21875	6067	14173	14229	22194	22194					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.3455810546875	2	544.345323	1086.67609	0.45593	0.00024818	0.64827	0.00035288	1.1042	0.00060107	544.3456053207908	19.846	0.13802	19.846	19.779	19.917	0					9	4	3	0	0	0	0.22823	1	5436	5436		58.246	0	1	185190			21876	6067	14173	14229	22195	22195					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.2325439453125	3	363.232641	1086.67609	0.28442	0.00010331	-0.59279	-0.00021532	-0.30838	-0.00011201	363.2324246529237	20.037	0.2176	20.037	19.927	20.145	0					9	4	3	0	0	0	0.25716	1	6442	6442		70.816	0	1	1005400			21877	6067	14173	14229	22196	22196					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.345703125	2	544.345323	1086.67609	1.967	0.0010707	-1.4104	-0.00076776	0.55653	0.00030295	544.344462682854	20.02	0.31902	20.02	19.91	20.229	0					13	6	4	0	0	0	0.02429	1	6434	6434		114.89	0	1	1726900			21878	6067	14173	14229	22197	22197					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.3447875976562	2	544.345323	1086.67609	1.0937	0.00059535	0.14722	8.0141E-05	1.2409	0.00067549	544.3450149254081	19.88	0.15119	19.88	19.781	19.932	0					6	3	2	0	0	0	0.035106	1	5479	5479		104.01	0	1	172780			21879	6067	14173	14229	22198	22198					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.232666015625	3	363.232641	1086.67609	-0.10062	-3.6549E-05	0.18875	6.8559E-05	0.088124	3.201E-05	363.2326993865321	19.88	0.15119	19.88	19.781	19.932	0					5	3	2	0	0	0	0.4966	1	5496	5496		40.058	0	1	149910			21880	6067	14173	14229	22199	22199					0.13622266811125883
KSTELLIRK	9	Unmodified	_KSTELLIRK_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.2325439453125	3	363.232641	1086.67609	-0.084012	-3.0516E-05	0.087381	3.1739E-05	0.0033689	1.2237E-06	363.2326369050248	20.051	0.31586	20.051	19.944	20.26	0					14	6	3	0	0	0	0.063171	1	6293	6293		96.665	0	1	1544200			21881	6067	14173	14229	22200	22200					0.13622266811125883
KSTFVNILK	9	Unmodified	_KSTFVNILK_					0	0	0		ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.3216552734375	2	525.321317	1048.62808	1.9109	0.0010038	-0.78703	-0.00041345	1.1238	0.00059038	525.3207001224592	32.102	0.17737	32.102	32.018	32.195	0					11	4	3	0	0	0	0.18416	1	11768	11768		63.534	10.597	1	244730			21882	5158	14174	14230	22201	22201					0.10571192891075043
KSTIGVEFATR	11	Unmodified	_KSTIGVEFATR_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	604.835693359375	2	604.83532	1207.65609	0.14914	9.0205E-05	-0.19903	-0.00012038	-0.049891	-3.0176E-05	604.8351777181763	20.667	0.22175	20.667	20.547	20.769	0					16	6	3	0	0	0	0.55715	1	5546	5546		40.058	1.3046	1	436060			21883	2260	14175	14231	22202	22202					0.06056471080501069
KSTKDRYDK	9	Unmodified	_KSTKDRYDK_					0	0	0		ENSG00000196345|ENST00000426540|ZKSCAN7	ENSG00000196345|ENST00000426540|ZKSCAN7	ENSG00000196345|ENST00000426540|ZKSCAN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.8057250976562	2	570.80402	1139.59349	3.4151	0.0019494	0.27116	0.00015478	3.6863	0.0021042	570.8040600433519	41.875	0.29727	41.875	41.768	42.065	0					13	8	2	0	0	0	0.39215	1	16661	16661		42.396	0.96952	1	290420			21884	7351	14176	14232	22203	22203					0.029273250123196703
KSTLVQHQ	8	Unmodified	_KSTLVQHQ_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.76397705078125	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.517	1	16.517	16.017	17.017	0								0	0	0	1.7419	1	3979	3979		47.657	3.5405	1				21885	6823	14177	14233	22204	22204					0.04160303128992382
KSTQGRSK	8	Unmodified	_KSTQGRSK_					0	0	0		nc|ENSG00000284680|Q96RD0|OR8B2;nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284680|Q96RD0|OR8B2	nc|ENSG00000284680|Q96RD0|OR8B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.2562561035156	2	446.253966	890.493378	3.3717	0.0015046	0.79324	0.00035399	4.165	0.0018586	446.254339229192	30.82	0.40486	30.82	30.719	31.124	0					25	14	3	0	0	0	0.60719	1	10140	10140		47.916	0	1	767090			21886	11816	14178	14234	22205	22205					0.04375132469192522
KSTQKPGL	8	Unmodified	_KSTQKPGL_					0	0	0		ENST00000449260.6_1_12:56355419-56359775:-|nuORF	ENST00000449260.6_1_12:56355419-56359775:-|nuORF	ENST00000449260.6_1_12:56355419-56359775:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.75579833984375	2	429.75581	857.497067	0.95901	0.00041214	-1.155	-0.00049639	-0.19604	-8.4248E-05	429.75529651660247	32.261	0.3346	32.261	32.126	32.46	0					13	7	3	0	0	0	0.59773	1	12268	12268		49.442	5.3247	1	260480			21887	9636	14179	14235	22206	22206					0.06261802243045622
KSTSFRPG	8	Unmodified	_KSTSFRPG_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.23748779296875	2	440.237784	878.461016	0.70414	0.00030999	-1.2475	-0.00054918	-0.54332	-0.00023919	440.23717064658115	15.789	0.3664	15.789	15.63	15.997	0					15	7	3	0	0	0	0.61938	1	4252	4252		45.952	0	1	656260			21888	4548	14180	14236	22207	22207					0.01692345066192047
KSTSKLKKR	9	Unmodified	_KSTSKLKKR_					0	0	0			REV__ENSG00000087338|ENST00000282570|GMCL1	REV__ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3533935546875	2	538.35094	1074.68733	3.3774	0.0018182	1.1794	0.00063496	4.5568	0.0024532	538.3515384375058	27.838	1.3138	27.838	27.729	29.043	0					53	26	4	0	0	0	0.47449	1	10021	10021		35.152	19.819	1	2238300	+		21889	13384	14181	14237	22208	22208					0.15297088905253986
KSTSSKLVRN	10	Unmodified	_KSTSSKLVRN_					0	0	0		ENST00000435581.7_1_X:2573089-2573287:+|nuORF	ENST00000435581.7_1_X:2573089-2573287:+|nuORF	ENST00000435581.7_1_X:2573089-2573287:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.330322265625	2	560.327662	1118.64077	3.4696	0.0019441	1.1529	0.00064598	4.6224	0.0025901	560.328321970858	25.187	0.42151	25.187	25.076	25.498	0					12	8	3	0	0	0	0.16745	1	8799	8799		52.937	52.937	1	1417300			21890	9524	14182	14238	22209	22209					0.08619604283330773
KSTSTGKRK	9	Unmodified	_KSTSTGKRK_					0	0	0		ENST00000541207.1_1_12:12674099-12674270:-|nuORF	ENST00000541207.1_1_12:12674099-12674270:-|nuORF	ENST00000541207.1_1_12:12674099-12674270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7979431152344	2	496.795998	991.577442	2.8882	0.0014349	0.97211	0.00048294	3.8604	0.0019178	496.7965050813932	29.134	0.46414	29.134	28.877	29.341	0					25	9	4	0	0	0	0.15163	1	10627	10627		67.494	67.494	1	2223500			21891	10542	14183	14239	22210	22210					0.081316635660869
KSTTTGHLIYK	11	Unmodified	_KSTTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.90289306640625	3	416.903072	1247.68739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.26	1	19.26	18.76	19.76	0								0	0	0	0.21204	1	6057	6057		62.166	18.515	1				21892	5177	14184	14240	22211	22211					0.07345044114617849
KSTVVKAG	8	Unmodified	_KSTVVKAG_					0	0	0			REV__ENST00000569494.5_3_16:57679871-57684200:+|nuORF	REV__ENST00000569494.5_3_16:57679871-57684200:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.24517822265625	2	395.245078	788.475603	0.90194	0.00035649	-0.093105	-3.6799E-05	0.80883	0.00031969	395.24498837469304	11.885	0.19456	11.885	11.791	11.986	0					9	6	2	0	0	0	0.24915	1	2369	2369		102.77	6.5829	1	360000	+		21893	20367	14185	14241	22212	22212					0.07290417214335321
KSTVVKAG	8	Unmodified	_KSTVVKAG_					0	0	0			REV__ENST00000569494.5_3_16:57679871-57684200:+|nuORF	REV__ENST00000569494.5_3_16:57679871-57684200:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.2449035644531	2	395.245078	788.475603	0.54831	0.00021672	-0.25631	-0.00010131	0.292	0.00011541	395.24491741598007	11.957	0.53501	11.957	11.819	12.354	0					18	14	2	0	0	0	0.24915	1	2585	2585		102.77	14.13	1	2099500	+		21894	20367	14185	14241	22213	22213					0.07290417214335321
KSTVVKAG	8	Unmodified	_KSTVVKAG_					0	0	0			REV__ENST00000569494.5_3_16:57679871-57684200:+|nuORF	REV__ENST00000569494.5_3_16:57679871-57684200:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2453918457031	2	395.245078	788.475603	3.1734	0.0012543	-3.0572	-0.0012083	0.11624	4.5945E-05	395.24407703173114	11.916	0.1705	11.916	11.797	11.967	0					6	5	2	0	0	0	0.41701	1	2417	2417		68.787	2.9837	1	408330	+		21895	20367	14185	14241	22214	22214					0.07290417214335321
KSVARPAAVK	10	Unmodified	_KSVARPAAVK_					0	0	0			REV__nc|ENSG00000240303|Q709F0-3|ACAD11	REV__nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.8258666992188	2	513.824558	1025.63456	1.4628	0.00075164	-1.0225	-0.00052539	0.44031	0.00022624	513.8240863879164	14.857	0.42036	14.857	14.592	15.012	0					24	8	4	0	0	0	0.53919	1	3828	3828		22.58	0	1	1572000	+		21896	17680	14186	14242	22215	22215					0.12277130842448969
KSVDPTLAL	9	Unmodified	_KSVDPTLAL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2762756347656	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.685	1	36.685	36.185	37.185	0								0	0	0	0.15687	1	13854	13854		58.23	5.2932	1				21897	4438	14187	14243	22216	22216					0.06502938211713172
KSVDPTLAL	9	Unmodified	_KSVDPTLAL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2762451171875	2	472.276575	942.538597	-2.4415	-0.0011531	1.5042	0.0007104	-0.93729	-0.00044266	472.2773994522317	36.46	0.23563	36.46	36.361	36.597	0					20	11	3	0	0	0	0.25716	1	13041	13041		54.776	1.8396	1	138130			21898	4438	14187	14243	22217	22217					0.06502938211713172
KSVDSKAR	8	Unmodified	_KSVDSKAR_					0	0	0			REV__CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	REV__CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.75616455078125	2	445.756341	889.498129	-0.29597	-0.00013193	-0.043311	-1.9306E-05	-0.33928	-0.00015124	445.75630278184065	15.545	0.091826	15.545	15.483	15.575	0					6	3	2	0	0	0	0.72381	1	3394	3394		30.504	30.504	1	109220	+		21899	12333	14188	14244	22218	22218					0.048960166119513815
KSVKGLTYTP	10	Unmodified	_KSVKGLTYTP_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.3173217773438	2	547.316232	1092.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.32	1	34.32	33.82	34.82	0								0	0	0	0.3963	1	11215	11215		19.997	0	1				21900	23043	14189	14245	22219	22219					0.0753058516584133
KSVPFAALL	9	Unmodified	_KSVPFAALL_					0	0	0			REV__PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	REV__PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.29412841796875	2	473.292028	944.569503	-0.57976	-0.00027439	3.6964	0.0017495	3.1167	0.0014751	473.29383648981093	34.793	0.21236	34.793	34.684	34.897	0					7	4	2	0	0	0	0.26904	1	13385	13385		53.351	5.4358	1	74282	+		21901	14274	14190	14246	22220	22220					0.09500136316592034
KSVRKESEA	9	Unmodified	_KSVRKESEA_					0	0	0			REV__LTR7Y_dup128|chrX:4540474-4540914:-|2.433378595797467|0.000861881152375|11.46|443.0|28|3|anti-sense	REV__LTR7Y_dup128|chrX:4540474-4540914:-|2.433378595797467|0.000861881152375|11.46|443.0|28|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2864990234375	2	517.285463	1032.55637	0.044806	2.3177E-05	2.1638	0.0011193	2.2087	0.0011425	517.2858934686943	34.063	0.45061	34.063	33.768	34.219	0					23	12	3	0	0	0	0.3269	1	12649	12649		47.96	2.9373	1	282410	+		21902	20856	14191	14247	22221	22221					0.041396534665636864
KSVSTGKG	8	Unmodified	_KSVSTGKG_					0	0	0			REV__ENST00000597219.1_3_19:58095687-58095951:+|nuORF	REV__ENST00000597219.1_3_19:58095687-58095951:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.2190246582031	2	382.21906	762.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.023	1	13.023	12.523	13.523	0								0	0	0	1.7419	1	2920	2920		58.782	7.4465	1		+		21903	20572	14192	14248	22222	22222					0.03285253800572718
KSVSTYRK	8	Unmodified	_KSVSTYRK_					0	0	0		tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1	tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1	tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	323.5223388671875	3	323.522303	967.545079	0.53508	0.00017311	-0.51325	-0.00016605	0.021831	7.0628E-06	323.52206718470796	13.931	0.16822	13.931	13.848	14.016	0					7	4	2	0	0	0	0.7126	1	3290	3290		34.173	1.3601	1	139730			21904	22787	14193	14249	22223	22223					0.06000876163079738
KSVVHRCQ	8	Unmodified	_KSVVHRCQ_					0	0	0			REV__ENSG00000061492|ENST00000506684|WNT8A	REV__ENSG00000061492|ENST00000506684|WNT8A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7579040527344	2	478.758361	955.502169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.437	1	14.437	13.937	14.937	0								0	0	0	1.7419	1	3591	3591		44.117	1.6423	1		+		21905	13086	14194	14250	22224	22224					0.022637828340066335
KSVVLAAP	8	Unmodified	_KSVVLAAP_					0	0	0			REV__ENSG00000084444|ENST00000197268|FAM234B	REV__ENSG00000084444|ENST00000197268|FAM234B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.74835205078125	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.754	1	49.754	49.254	50.254	0								0	0	0	1.7419	1	18710	18710		19.36	0	1		+		21906	13345	14195	14251	22225	22225					0.0850360521968696
KSVYWENTL	9	Unmodified	_KSVYWENTL_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.2930297851562	2	570.290214	1138.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.954	1	41.954	41.454	42.454	0								0	0	0	0.19847	1	16715	16715		51.193	1.7511	1				21907	2674	14196	14252	22226	22226					0.0021342175209611014
KSWVLDGVNY	10	Unmodified	_KSWVLDGVNY_					0	0	0			REV__nc|ENSG00000109685|O96028-6|NSD2	REV__nc|ENSG00000109685|O96028-6|NSD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.803955078125	2	590.803488	1179.59242	1.3044	0.00077062	-0.84044	-0.00049653	0.46392	0.00027409	590.8031412169832	39.512	0.28057	39.512	39.376	39.656	0					11	6	3	0	0	0	0.43008	1	15638	15638		52.937	10.541	1	147960	+		21908	13908	14197	14253	22227	22227					0.009811106434199246
KSYDQVHSGK	10	Unmodified	_KSYDQVHSGK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.789306640625	2	574.78837	1147.56219	1.0278	0.00059078	-0.46942	-0.00026982	0.5584	0.00032096	574.7878700820679	13.511	0.085464	13.511	13.466	13.552	0					9	4	3	0	0	0	0.1725	1	2657	2657		82.831	29.742	1	145380			21909	5411	14198	14254	22228	22228					-0.005692480217476259
KSYDQVHSGK	10	Unmodified	_KSYDQVHSGK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.7883911132812	2	574.78837	1147.56219	-0.10547	-6.0623E-05	0.5753	0.00033068	0.46983	0.00027005	574.7886612704598	13.779	0.28343	13.779	13.733	14.016	0					15	7	3	0	0	0	0.0063842	1	3216	3216		161.51	73.335	1	1142900			21910	5411	14198	14254	22229	22229					-0.005692480217476259
KSYDQVHSGK	10	Unmodified	_KSYDQVHSGK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.5278015136719	3	383.528005	1147.56219	0.19863	7.6179E-05	-0.50749	-0.00019464	-0.30886	-0.00011846	383.527807564005	13.756	0.20155	13.756	13.704	13.906	0					7	4	3	0	0	0	0.034064	1	3430	3430		136.81	61.019	1	178290			21911	5411	14198	14254	22230	22230					-0.005692480217476259
KSYDQVHSGK	10	Unmodified	_KSYDQVHSGK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.8626708984375	3	383.528005	1147.56219	0.2696	0.0001034	0.98491	0.00037774	1.2545	0.00048114	383.8628151884003	13.563	0.050325	13.563	13.525	13.575	0					4	2	2	0	0	0	0.5155	1	2745	2745		63.694	39.462	1	41745			21912	5411	14198	14254	22231	22231					-0.005692480217476259
KSYDQVHSGK	10	Unmodified	_KSYDQVHSGK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.789794921875	2	574.78837	1147.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.566	1	13.566	13.066	14.066	0								0	0	0	0.060926	1	2747	2747		88.134	28.015	1				21913	5411	14198	14254	22232	22232					-0.005692480217476259
KSYDQVHSGK	10	Unmodified	_KSYDQVHSGK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.5278015136719	3	383.528005	1147.56219	-0.56576	-0.00021699	0.31338	0.00012019	-0.25239	-9.6797E-05	383.52804280153646	13.724	0.2091	13.724	13.671	13.88	0					5	4	2	0	0	0	0.38179	1	3263	3263		88.134	29.504	1	287860			21914	5411	14198	14254	22233	22233					-0.005692480217476259
KSYFEKSK	8	Unmodified	_KSYFEKSK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7740783691406	2	508.7742	1015.53385	-0.069439	-3.5329E-05	0.31955	0.00016258	0.25011	0.00012725	508.7741546744119	27.213	0.21985	27.213	27.103	27.323	0					9	4	3	0	0	0	0.48504	1	9725	9725		61.691	0	1	508000			21915	5289	14199	14255	22234	22234					0.026700540689603258
KSYFSGLSK	9	Unmodified	_KSYFSGLSK_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7744445800781	2	508.7742	1015.53385	0.91707	0.00046658	-0.52913	-0.00026921	0.38794	0.00019737	508.77374453814207	27.257	0.26266	27.257	27.169	27.431	0					18	6	4	0	0	0	0.18505	1	9493	9493		63.426	1.7352	1	1364400			21916	1120	14200	14256	22235	22235					0.026700540689603258
KSYFSGLSK	9	Unmodified	_KSYFSGLSK_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.77398681640625	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.288	1	27.288	26.788	27.788	0								0	0	0	0.097963	1	9869	9869		72.243	4.7496	1				21917	1120	14200	14256	22236	22236					0.026700540689603258
KSYKLVVSR	9	Unmodified	_KSYKLVVSR_					0	0	0			REV__ENST00000438378.2_1_2:132278647-132279013:+|nuORF	REV__ENST00000438378.2_1_2:132278647-132279013:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.3323364257812	2	540.332216	1078.64988	0.66466	0.00035914	0.42377	0.00022898	1.0884	0.00058811	540.3321658876843	18.899	0.20327	18.899	18.811	19.014	0					8	4	3	0	0	0	0.22837	1	5738	5738		34.173	0	1	262160	+		21918	19222	14201	14257	22237	22237					0.11369997639667417
KSYRPLCTL	9	Unmodified	_KSYRPLCTL_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2;TMTC2|p.L239Wfs*90|1|0.34|ENSG00000179104|chr12:82895876-82895876|T/-|frameshift_variant;TMTC2|p.Y457Mfs*6|1|0.29|ENSG00000179104|chr12:82896527-82896527|T/-|frameshift_variant	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7963256835938	2	540.797152	1079.57975	1.9924	0.0010775	-3.4877	-0.0018862	-1.4954	-0.0008087	540.7950754241986	40.339	0.20447	40.339	40.221	40.425	0					12	8	2	0	0	0	0.3269	1	15911	15911		49.442	1.7842	1	62763			21919	6756	14202	14258	22238	22238					0.04314375979538454
KTAEDAKDFFK	11	Unmodified	_KTAEDAKDFFK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	650.3324584960938	2	650.33261	1298.65067	-0.7324	-0.0004763	0.75898	0.00049359	0.026582	1.7287E-05	650.3329582703984	26.632	0.21793	26.632	26.543	26.761	0					7	4	2	0	0	0	0.20372	1	9580	9580		73.841	27.384	1	156670			21920	3312	14203	14259	22239	22239					0.013287474980188563
KTAEDAKDFFK	11	Unmodified	_KTAEDAKDFFK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.8907470703125	3	433.890832	1298.65067	-0.52967	-0.00022982	0.43124	0.00018711	-0.098436	-4.271E-05	433.89096667266136	26.47	0.22494	26.47	26.383	26.608	0					10	5	3	0	0	0	0.42746	1	8537	8537		66.92	28.167	1	113980			21921	3312	14203	14259	22240	22240					0.013287474980188563
KTAEDAKDFFK	11	Unmodified	_KTAEDAKDFFK_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.89068603515625	3	433.890832	1298.65067	0.84846	0.00036814	-0.94206	-0.00040875	-0.093604	-4.0614E-05	433.890341859138	26.544	0.61869	26.544	26.434	27.053	0					26	12	3	0	0	0	0.12878	1	9401	9401		100.09	36.552	1	1348400			21922	3312	14203	14259	22241	22241					0.013287474980188563
KTAETGYIQR	10	Unmodified	_KTAETGYIQR_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.811279296875	2	583.811845	1165.60914	-0.23181	-0.00013533	0.070289	4.1036E-05	-0.16152	-9.4298E-05	583.8115836328711	19.426	0.074265	19.426	19.382	19.456	0					4	2	2	0	0	0	0.52848	1	5263	5263		53.089	16.642	1	51180			21923	6845	14204	14260	22242	22242					0.032956115293927724
KTAGINVRK	9	Unmodified	_KTAGINVRK_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.8092346191406	2	493.808908	985.603263	-0.049045	-2.4219E-05	0.69653	0.00034395	0.64749	0.00031973	493.80922822844974	15.493	0.11603	15.493	15.434	15.55	0					4	2	2	0	0	0	0.085655	1	4255	4255		82.75	5.9763	1	276350			21924	2913	14205	14261	22243	22243					0.10988557808377664
KTAKAQRSAQ	10	Unmodified	_KTAKAQRSAQ_					0	0	0			REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.8123779296875	2	544.812179	1087.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.352	1	14.352	13.852	14.852	0								0	0	0	0.4201	1	3025	3025		2.7184	1.623	1		+		21925	14432	14206	14262	22244	22244					0.06950450969088706
KTALACSGHQV	11	Unmodified	_KTALACSGHQV_					0	0	0			REV__ENST00000523028.5_1_16:21912870-21927266:-|nuORF	REV__ENST00000523028.5_1_16:21912870-21927266:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7880859375	2	557.787315	1113.56008	0.5427	0.00030271	0.96194	0.00053656	1.5046	0.00083927	557.7878704581946	15.734	0.25084	15.734	15.646	15.897	0					16	6	4	0	0	0	0.54277	1	4133	4133		38.754	0	1	5381200	+		21926	19967	14207	14263	22245	22245					0.007839999687803356
KTALILGGDR	10	Unmodified	_KTALILGGDR_					0	0	0		DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant;DDX54|p.R734Lfs*97|1|0.27|ENSG00000123064|chr12:113161992-113161992|C/-|frameshift_variant;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54;DDX54|p.G271Afs*41|1|0.25|ENSG00000123064|chr12:113175098-113175098|C/-|frameshift_variant	DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant	DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.3161010742188	2	522.314023	1042.61349	3.4015	0.0017766	2.585	0.0013502	5.9865	0.0031268	522.3144561104502	32.772	0.70855	32.772	32.338	33.046	0					30	14	3	0	0	0	0.25862	1	12385	12385		68.626	15.689	1	700250			21927	764	14208	14264	22246	22246					0.0938912074293512
KTALKACKTPQ	11	Unmodified	_KTALKACKTPQ_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.842041015625	2	594.842091	1187.66963	0.7908	0.0004704	-0.34554	-0.00020554	0.44527	0.00026486	594.8417813269705	15.861	0.21186	15.861	15.697	15.909	0					14	5	3	0	0	0	0.056454	1	4177	4177		84.817	11.938	1	252050			21928	6453	14209	14265	22247	22247					0.08330005588095446
KTALKACKTPQ	11	Unmodified	_KTALKACKTPQ_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.89715576171875	3	396.897152	1187.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.851	1	15.851	15.351	16.351	0								0	0	0	0.4462	1	4416	4416		26.75	4.1881	1				21929	6453	14209	14265	22248	22248					0.08330005588095446
KTALQRLCM	9	Carbamidomethyl (C)	_KTALQRLC(Carbamidomethyl (C))M_	KTALQRLC(1)M		KTALQRLC(56)M		0	1	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;ENST00000581682.1_1_17:11787806-11828539:+|nuORF;nc|ENSG00000007174|Q9NYC9-3|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.8045043945312	2	560.801911	1119.58927	4.3401	0.002434	-0.79354	-0.00044502	3.5466	0.0019889	560.8014528848512	22.082	0.33113	22.082	21.984	22.315	0					24	10	4	0	0	0	0.25109	1	6425	6425		55.504	55.504	1	1708800			21930	997	14210	14266	22249	22249	31				0.0342582099340234
KTALSLGR	8	Unmodified	_KTALSLGR_					0	0	0		nc|ENSG00000249139|O95925-2|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2637634277344	2	423.263802	844.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.913	1	15.913	15.413	16.413	0								0	0	0	1.7419	1	4209	4209		62.107	5.3864	1				21931	11788	14211	14267	22250	22250					0.08457508479943954
KTALSWVKK	9	Unmodified	_KTALSWVKK_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.8284912109375	2	530.829309	1059.64407	-1.2202	-0.0006477	-1.1955	-0.00063462	-2.4157	-0.0012823	530.8284322328359	13.996	0.078778	13.996	13.947	14.026	0					4	2	2	0	0	0	0.19952	1	2891	2891		54.776	1.4249	1	87399			21932	42	14212	14268	22251	22251					0.11662899127986748
KTAMENMPKVP	11	Oxidation (M)	_KTAM(Oxidation (M))ENMPKVP_		KTAM(0.5)ENM(0.5)PKVP		KTAM(0)ENM(0)PKVP	0	0	1			REV__RAB11FIP1|p.A1184E|1|0.17|ENSG00000156675|chr8:37870502-37870502|G/T|missense_variant	REV__RAB11FIP1|p.A1184E|1|0.17|ENSG00000156675|chr8:37870502-37870502|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	631.31787109375	2	631.317591	1260.62063	1.1489	0.0007253	-0.88539	-0.00055896	0.26347	0.00016634	631.3171277235032	25.601	0.26166	25.601	25.482	25.744	0					22	6	4	0	0	0	0.38515	1	8766	8766		53.089	53.089	2	1499800	+		21933	21435	14213	14269	22252	22252		772;773			0.0007434923682012595
KTANEGGLVKS	11	Unmodified	_KTANEGGLVKS_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.30810546875	2	552.306395	1102.59824	1.3178	0.00072781	2.5648	0.0014166	3.8826	0.0021444	552.3081993694855	27.16	0.3998	27.16	27.001	27.401	0					27	15	2	0	0	0	0.70609	1	8330	8330		27.047	0.3544	1	78646			21934	4874	14214	14270	22253	22253					0.051042091551153135
KTAQVSIFENY	11	Unmodified	_KTAQVSIFENY_					0	0	0			REV__ENST00000491263.1_1_1:163042508-163043577:+|nuORF	REV__ENST00000491263.1_1_1:163042508-163043577:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.89093017578125	3	433.890832	1298.65067	-0.79216	-0.00034371	0.48797	0.00021172	-0.3042	-0.00013199	433.89114758033327	26.379	0.19473	26.379	26.274	26.469	0					13	6	3	0	0	0	0.40021	1	8294	8294		53.013	0	1	216350	+		21935	14182	14215	14271	22254	22254					0.01328747498064331
KTASDFITK	9	Unmodified	_KTASDFITK_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.77935791015625	2	505.779482	1009.54441	0.12868	6.5086E-05	-0.3025	-0.000153	-0.17381	-8.7911E-05	505.7792913136253	23.02	0.16725	23.02	22.911	23.078	0					6	3	2	0	0	0	0.12834	1	7885	7885		72.879	10.772	1	313560			21936	4813	14216	14272	22255	22255					0.04002036723375113
KTASFTTKI	9	Unmodified	_KTASFTTKI_					0	0	0		ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8	ENSG00000138892|ENST00000433387|TTLL8	ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7907409667969	2	498.78985	995.565146	-0.739	-0.00036861	1.4875	0.00074194	0.74847	0.00037333	498.7904634826501	44.924	0.23499	44.924	44.796	45.031	0					16	9	2	0	0	0	0.35021	1	17980	17980		45.972	0	1	52491			21937	4299	14217	14273	22256	22256					0.06718627103043673
KTASGGKMQS	10	Oxidation (M)	_KTASGGKM(Oxidation (M))QS_		KTASGGKM(1)QS		KTASGGKM(65)QS	0	0	1			REV__GCKR|p.R259Q|1|0.38|ENSG00000084734|chr2:27505743-27505743|G/A|missense_variant	REV__GCKR|p.R259Q|1|0.38|ENSG00000084734|chr2:27505743-27505743|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.74896240234375	2	505.750398	1009.48624	-0.7466	-0.00037759	-1.4856	-0.00075133	-2.2322	-0.0011289	505.7497044089824	15.995	0.14634	15.995	15.928	16.074	0					9	5	2	0	0	0	0.31894	1	3744	3744		65.157	6.9273	1	164850	+		21938	20688	14218	14274	22257	22257		739			-0.018119681935331755
KTATAVAHCK	10	Carbamidomethyl (C)	_KTATAVAHC(Carbamidomethyl (C))K_	KTATAVAHC(1)K		KTATAVAHC(110)K		0	1	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7900390625	2	543.789858	1085.56516	0.35097	0.00019085	0.3101	0.00016863	0.66106	0.00035948	543.7899869623722	12.892	0.1022	12.892	12.826	12.928	0					7	3	3	0	0	0	0.041742	1	2803	2803		112.11	57.331	1	301420			21939	2334	14219	14275	22258	22258	94				0.0258030383138248
KTATAVAHCK	10	Carbamidomethyl (C)	_KTATAVAHC(Carbamidomethyl (C))K_	KTATAVAHC(1)K		KTATAVAHC(120)K		0	1	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7902221679688	2	543.789858	1085.56516	1.9933	0.0010839	-1.0785	-0.00058649	0.9148	0.00049746	543.7890400398943	12.846	0.23002	12.846	12.754	12.984	0					8	5	3	0	0	0	0.022935	1	3001	3001		123.11	29.968	1	286790			21940	2334	14219	14275	22259	22259	94				0.0258030383138248
KTATAVAHCK	10	Carbamidomethyl (C)	_KTATAVAHC(Carbamidomethyl (C))K_	KTATAVAHC(1)K		KTATAVAHC(70)K		0	1	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7904663085938	2	543.789858	1085.56516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.835	1	12.835	12.335	13.335	0								0	0	0	0.14936	1	2831	2831		70.399	23.942	1				21941	2334	14219	14275	22260	22260	94				0.0258030383138248
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.279052734375	2	515.279126	1028.5437	0.028958	1.4922E-05	-0.17303	-8.9158E-05	-0.14407	-7.4237E-05	515.2791380181066	13.698	0.092449	13.698	13.613	13.705	0					6	2	3	0	0	0	0.17524	1	3166	3166		79.489	52.796	1	237220			21942	2334	14219	14276	22261	22261					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2797241210938	2	515.279126	1028.5437	-0.12348	-6.3629E-05	2.2923	0.0011812	2.1688	0.0011175	515.2801325196508	13.452	0.076521	13.452	13.406	13.482	0					6	4	2	0	0	0	0.30023	1	2771	2771		63.426	29.505	1	55512			21943	2334	14219	14276	22262	22262					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.279296875	2	515.279126	1028.5437	1.4101	0.00072659	-1.6757	-0.00086344	-0.26559	-0.00013685	515.2785312712446	13.644	0.15726	13.644	13.591	13.748	0					8	3	3	0	0	0	0.013042	1	3378	3378		120.27	59.301	1	491520			21944	2334	14219	14276	22263	22263					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.85504150390625	3	343.855176	1028.5437	1.4688	0.00050506	-2.0227	-0.00069553	-0.5539	-0.00019046	343.85458315744745	13.644	0.15726	13.644	13.591	13.748	0					5	3	2	0	0	0	0.27396	1	3382	3382		70.412	18.884	1	159220			21945	2334	14219	14276	22264	22264					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.28076171875	2	515.279126	1028.5437	0.69551	0.00035838	1.3249	0.00068269	2.0204	0.0010411	515.2801566228947	13.472	0.086702	13.472	13.438	13.525	0					6	4	2	0	0	0	0.33224	1	2709	2709		51.528	28.485	1	50715			21946	2334	14219	14276	22265	22265					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2804565429688	2	515.279126	1028.5437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.479	1	13.479	12.979	13.979	0								0	0	0	0.13836	1	2714	2714		59.931	29.427	1				21947	2334	14219	14276	22266	22266					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2796630859375	2	515.279126	1028.5437	1.4987	0.00077227	-1.4	-0.00072141	0.098703	5.086E-05	515.27854087335	13.612	0.20389	13.612	13.511	13.715	0					11	4	3	0	0	0	0.046394	1	3189	3189		99.013	65.497	1	409390			21948	2334	14219	14276	22267	22267					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8550720214844	3	343.855176	1028.5437	1.5315	0.00052663	-1.5047	-0.00051738	0.026877	9.2416E-06	343.8545577053653	13.612	0.15975	13.612	13.511	13.671	0					5	3	2	0	0	0	0.48255	1	3214	3214		47.228	13.306	1	189640			21949	2334	14219	14276	22268	22268					0.03056918802690234
KTATAVAHCK	10	Unmodified	_KTATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2792358398438	2	515.279126	1028.5437	3.2374	0.0016682	-3.4154	-0.0017599	-0.17798	-9.1711E-05	515.2773475797441	13.598	0.25094	13.598	13.498	13.749	0					8	5	2	0	0	0	0.049815	1	3202	3202		97.597	37.478	1	678180			21950	2334	14219	14276	22269	22269					0.03056918802690234
KTATLHCTVT	10	Unmodified	_KTATLHCTVT_					0	0	0		SIRPG|p.V150Wfs*15|1|0.31|ENSG00000089012|chr20:1636489-1636489|G/-|frameshift_variant;nc|ENSG00000089012|Q9P1W8-3|SIRPG;nc|ENSG00000089012|Q9P1W8-4|SIRPG;nc|ENSG00000089012|Q9P1W8-2|SIRPG;ENSG00000089012|ENST00000303415|SIRPG	SIRPG|p.V150Wfs*15|1|0.31|ENSG00000089012|chr20:1636489-1636489|G/-|frameshift_variant	SIRPG|p.V150Wfs*15|1|0.31|ENSG00000089012|chr20:1636489-1636489|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7839965820312	2	537.784241	1073.55393	0.22319	0.00012003	-1.4089	-0.00075766	-1.1857	-0.00063763	537.7832080534865	13.301	0.30048	13.301	13.216	13.516	0					12	8	3	0	0	0	0.47859	1	3004	3004		47.657	3.2801	1	630040			21951	1793	14220	14277	22270	22270					0.020094817372637408
KTATNIIKK	9	Unmodified	_KTATNIIKK_					0	0	0		ENST00000472054.2_1_6:142738255-142764649:+|nuORF;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000497898.2_1_6:142759254-142764649:+|nuORF	ENST00000472054.2_1_6:142738255-142764649:+|nuORF	ENST00000472054.2_1_6:142738255-142764649:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.55377197265625	3	339.553603	1015.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.859	1	15.859	15.359	16.359	0								0	0	0	0.29356	1	4184	4184		43.651	9.7292	1				21952	2742	14221	14278	22271	22271					0.13178595265389959
KTATQPLLKK	10	Unmodified	_KTATQPLLKK_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.57611083984375	3	376.576408	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.951	1	16.951	16.451	17.451	0								0	0	0	0.3963	1	4948	4948		31.634	3.0575	1				21953	1351	14222	14279	22272	22272					0.14910839845242663
KTAVNVLLK	9	Unmodified	_KTAVNVLLK_					0	0	0		ENSG00000068784|ENST00000263736|SRBD1;nc|ENSG00000068784|Q8N5C6-2|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.2196044921875	3	329.218332	984.633166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.135	1	29.135	28.635	29.635	0								0	0	0	0.39802	1	9761	9761		12.812	4.5766	1				21954	1426	14223	14280	22273	22273					0.14023496753702602
KTCEMESR	8	Unmodified	_KTCEMESR_					0	0	0		nc|ENSG00000240344|Q9H2H8-2|PPIL3	nc|ENSG00000240344|Q9H2H8-2|PPIL3	nc|ENSG00000240344|Q9H2H8-2|PPIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2194519042969	2	492.217877	982.421201	2.7256	0.0013416	0.21272	0.0001047	2.9383	0.0014463	492.21787511543806	33.325	0.46616	33.325	33.167	33.633	0					21	9	3	0	0	0	0.27635	1	12670	12670		90.37	18.492	1	571270			21955	11784	14224	14281	22274	22274					-0.07071285991048626
KTCEQAGKSI	10	Unmodified	_KTCEQAGKSI_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7725830078125	2	532.773874	1063.53319	-1.285	-0.00068464	-1.2005	-0.00063961	-2.4856	-0.0013242	532.7731477219533	33.294	0.40003	33.294	33.208	33.608	0					23	11	4	0	0	0	0.12763	1	11672	11672		90.601	0.23104	1	549370	+		21956	14318	14225	14282	22275	22275					0.003968913575818078
KTCGILCCK	9	Unmodified	_KTCGILCCK_					0	0	0			REV__ENST00000487557.2_1_9:5335253-5339295:-|nuORF	REV__ENST00000487557.2_1_9:5335253-5339295:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7397766113281	2	484.739934	967.465314	0.29503	0.00014301	-0.60883	-0.00029512	-0.3138	-0.00015211	484.7396478807558	17.488	0.16986	17.488	17.389	17.558	0					9	5	2	0	0	0	0.22377	1	4361	4361		58.782	4.0056	1	246000	+		21957	13843	14226	14283	22276	22276					-0.019719730984206763
KTCLIVVEKK	10	Unmodified	_KTCLIVVEKK_					0	0	0			REV__ENST00000533050.5_2_11:126081479-126104922:+|nuORF	REV__ENST00000533050.5_2_11:126081479-126104922:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.855224609375	2	580.857209	1159.69987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.633	1	15.633	15.133	16.133	0								0	0	0	0.41137	1	3548	3548		27.047	1.4733	1		+		21958	20077	14227	14284	22277	22277					0.12640364253275038
KTCLLWAR	8	Unmodified	_KTCLLWAR_					0	0	0		ENST00000590513.2_1_17:40706533-40706686:-|nuORF	ENST00000590513.2_1_17:40706533-40706686:-|nuORF	ENST00000590513.2_1_17:40706533-40706686:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7765808105469	2	495.781305	989.548056	-0.66897	-0.00033166	0.30131	0.00014938	-0.36766	-0.00018228	495.78130203035704	18.629	0.3151	18.629	18.37	18.685	0					12	6	2	0	0	0	0.67394	1	5555	5555		37.159	3.2375	1	874970			21959	10949	14228	14285	22278	22278					0.05286428016233913
KTCSRRVKIN	10	Carbamidomethyl (C)	_KTC(Carbamidomethyl (C))SRRVKIN_	KTC(1)SRRVKIN		KTC(40)SRRVKIN		0	1	0		ENSG00000182674|ENST00000523207|KCNB2;KCNB2|p.L44Pfs*38|1|0.35|ENSG00000182674|chr8:72567856-72567857|-/G|frameshift_variant;KCNB2|p.E146Nfs*3|1|0.34|ENSG00000182674|chr8:72568162-72568162|A/-|frameshift_variant;KCNB2|p.E146Rfs*23|1|0.24|ENSG00000182674|chr8:72568161-72568162|-/A|frameshift_variant	ENSG00000182674|ENST00000523207|KCNB2	ENSG00000182674|ENST00000523207|KCNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.2433166503906	3	421.243434	1260.70847	-0.91854	-0.00038693	0.10661	4.4908E-05	-0.81193	-0.00034202	421.24347372551296	16.53	2.453	16.53	16.35	18.803	0					112	59	5	0	0	0	0.54861	1	4467	4467		40.058	40.058	1	6659300			21960	6912	14229	14286	22279	22279	294				0.08854730942471178
KTDALGMHNEG	11	Oxidation (M)	_KTDALGM(Oxidation (M))HNEG_		KTDALGM(1)HNEG		KTDALGM(74)HNEG	0	0	1			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.7694702148438	2	594.769319	1187.52409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.755	1	15.755	15.255	16.255	0								0	0	0	0.11071	1	4371	4371		74.165	19.443	1		+		21961	13001	14230	14287	22280	22280		501			-0.06217501998730768
KTDCKIQL	8	Unmodified	_KTDCKIQL_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.762939453125	2	474.762778	947.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.383	1	19.383	18.883	19.883	0								0	0	0	1.7419	1	6117	6117		40.778	1.5253	1		+		21962	13643	14231	14288	22281	22281					0.03514711679827087
KTDDKRAAI	9	Unmodified	_KTDDKRAAI_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2;REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000145362|ENST00000357077|ANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2878723144531	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.152	1	20.152	19.652	20.652	0								0	0	0	0.11159	1	6355	6355		52.937	1.744	1		+		21963	15268;12155	14232	14289	22282	22282					0.053839573291725173
KTDEKALK	8	Unmodified	_KTDEKALK_					0	0	0		RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant;ENSG00000175718|ENST00000424776|RBMXL3;RBMXL3|p.G265Afs*11|1|0.38|ENSG00000175718|chrX:115190234-115190234|G/-|frameshift_variant;RBMXL3|p.G100Afs*176|1|0.32|ENSG00000175718|chrX:115189734-115189734|C/-|frameshift_variant	RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant	RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7737121582031	2	466.7742	931.533846	-0.50254	-0.00023457	-0.18437	-8.6061E-05	-0.68691	-0.00032063	466.77401741408596	18.083	0.30705	18.083	17.883	18.19	0					11	6	3	0	0	0	0.25873	1	5352	5352		96.19	0.37527	1	2687500			21964	6571	14233	14290	22283	22283					0.06534054068958994
KTDFSISKGL	10	Unmodified	_KTDFSISKGL_					0	0	0			REV__nc|ENSG00000167377|P17027-2|ZNF23	REV__nc|ENSG00000167377|P17027-2|ZNF23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.304443359375	2	548.305864	1094.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.812	1	16.812	16.312	17.312	0								0	0	0	0.1345	1	4733	4733		72.879	6.45	1		+		21965	16187	14234	14291	22284	22284					0.05365994786211559
KTDKQPLQK	9	Unmodified	_KTDKQPLQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.320556640625	2	543.319306	1084.62406	1.8808	0.0010219	-0.65592	-0.00035637	1.2249	0.0006655	543.3195969025622	13.154	0.15979	13.154	13.078	13.238	0					6	4	2	0	0	0	0.048471	1	2942	2942		95.815	22.936	1	68131			21966	3867	14235	14292	22285	22285					0.08513103397376653
KTDKQPLQK	9	Unmodified	_KTDKQPLQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3197021484375	2	543.319306	1084.62406	2.0037	0.0010886	-1.2237	-0.00066487	0.77995	0.00042376	543.3186177948863	13.129	0.15298	13.129	13.006	13.159	0					7	3	3	0	0	0	0.037924	1	2971	2971		101.25	26.209	1	126100			21967	3867	14235	14292	22286	22286					0.08513103397376653
KTDLFKKEFPK	11	Unmodified	_KTDLFKKEFPK_					0	0	0		tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	690.898193359375	2	690.89792	1379.78129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.654	1	30.654	30.154	31.154	0								0	0	0	0.44027	1	11481	11481		28.081	2.0181	1				21968	22866	14236	14293	22287	22287					0.10658763216883926
KTDNRPLKK	9	Unmodified	_KTDNRPLKK_					0	0	0		BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;ENST00000549763.1_1_12:57000128-57003565:-|nuORF	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3333740234375	2	550.332747	1098.65094	1.6939	0.00093221	-0.60493	-0.00033291	1.089	0.0005993	550.3323790183005	11.988	0.074574	11.988	11.954	12.029	0					4	2	2	0	0	0	0.17062	1	2599	2599		58.23	3.4536	1	467740			21969	278	14237	14294	22288	22288					0.10556212008555121
KTDPSAAGRKK	11	Unmodified	_KTDPSAAGRKK_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.8331909179688	2	579.833111	1157.65167	-0.041274	-2.3932E-05	0.70679	0.00040982	0.66551	0.00038589	579.8334605865148	10.843	0.12903	10.843	10.718	10.847	0					6	2	3	0	0	0	0.03692	1	2054	2054		94.409	14.697	1	191610			21970	6963	14238	14295	22289	22289					0.07915006657594859
KTDPSAAGRKK	11	Unmodified	_KTDPSAAGRKK_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.8345336914062	2	579.833111	1157.65167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.663	1	10.663	10.163	11.163	0								0	0	0	0.39785	1	2058	2058		28.081	0	1				21971	6963	14238	14295	22290	22290					0.07915006657594859
KTDPSAAGRKK	11	Unmodified	_KTDPSAAGRKK_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.834228515625	2	579.833111	1157.65167	1.5779	0.00091493	-1.2906	-0.00074832	0.28732	0.0001666	579.832433250421	10.856	0.09941	10.856	10.805	10.905	0					9	4	3	0	0	0	4.564E-05	1	2105	2105		147.73	40.725	1	1629800			21972	6963	14238	14295	22291	22291					0.07915006657594859
KTDPSAAGRKK	11	Unmodified	_KTDPSAAGRKK_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.8352661132812	2	579.833111	1157.65167	1.7411	0.0010095	0.36129	0.00020949	2.1024	0.001219	579.8333741269764	10.846	0.056074	10.846	10.809	10.865	0					6	3	2	0	0	0	0.047958	1	2060	2060		89.029	49.776	1	92950			21973	6963	14238	14295	22292	22292					0.07915006657594859
KTDPSAAGRKK	11	Unmodified	_KTDPSAAGRKK_					0	0	0		EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.8911437988281	3	386.891166	1157.65167	0.54522	0.00021094	-0.33016	-0.00012773	0.21506	8.3204E-05	386.8909912401993	10.84	0.056074	10.84	10.809	10.865	0					5	3	2	0	0	0	0.54316	1	2061	2061		41.08	7.1584	1	50342			21974	6963	14238	14295	22293	22293					0.07915006657594859
KTDSDIISK	9	Unmodified	_KTDSDIISK_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.77447509765625	2	503.774396	1005.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.498	1	18.498	17.998	18.998	0								0	0	0	0.039046	1	5688	5688		91.265	10.811	1				21975	3444	14239	14296	22294	22294					0.0316942899814876
KTDTTGAGL	9	Unmodified	_KTDTTGAGL_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A;MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2278137207031	2	432.227082	862.439611	-0.79199	-0.00034232	0.69682	0.00030118	-0.095168	-4.1134E-05	432.2272814851946	17.281	0.20504	17.281	17.168	17.373	0					9	6	2	0	0	0	0.53083	1	4321	4321		29.15	1.2673	1	160810			21976	7058	14240	14297	22295	22295					0.0028891524681284864
KTDVDPLDE	9	Unmodified	_KTDVDPLDE_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2489013671875	2	516.248212	1030.48187	1.4605	0.00075395	0.12518	6.4626E-05	1.5856	0.00081858	516.2482007659295	22.358	0.70642	22.358	22.204	22.911	0					31	14	3	0	0	0	0.11898	1	7542	7542		58.782	9.3404	1	9235600			21977	772	14241	14298	22296	22296					-0.03215154135455123
KTDVDPLDE	9	Unmodified	_KTDVDPLDE_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.5015869140625	3	344.501233	1030.48187	1.4673	0.00050549	-0.28329	-9.7595E-05	1.184	0.00040789	344.5011126826947	22.358	0.50617	22.358	22.204	22.711	0					27	10	5	0	0	0	0.50858	1	7544	7544		31.53	31.53	1	4180800			21978	772	14241	14298	22297	22297					-0.03215154135455123
KTEEPVLPEI	10	Unmodified	_KTEEPVLPEI_					0	0	0			REV__EPB41L3|p.L792Afs*6|1|0.52|ENSG00000082397|chr18:5398120-5398121|-/T|frameshift_variant	REV__EPB41L3|p.L792Afs*6|1|0.52|ENSG00000082397|chr18:5398120-5398121|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.5484619140625	3	385.548295	1153.62306	0.18244	7.0341E-05	0.70475	0.00027172	0.8872	0.00034206	385.5484547784611	26.429	0.11741	26.429	26.326	26.443	0					6	2	3	0	0	0	0.63019	1	9447	9447		30.569	3.5215	1	164820	+		21979	13316	14242	14299	22298	22298					0.05238844237783269
KTEGWTAKG	9	Unmodified	_KTEGWTAKG_					0	0	0			REV__ENSG00000269058|ENST00000269881|CALR3	REV__ENSG00000269058|ENST00000269881|CALR3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2548522949219	2	489.256174	976.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.436	1	12.436	11.936	12.936	0								0	0	0	0.16453	1	2645	2645		56.434	0.92959	1		+		21980	17801	14243	14300	22299	22299					0.008605968920846863
KTEKTEKK	8	Unmodified	_KTEKTEKK_					0	0	0			REV__ENSG00000124380|ENST00000244227|SNRNP27	REV__ENSG00000124380|ENST00000244227|SNRNP27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2922668457031	2	496.292756	990.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.831	1	17.831	17.331	18.331	0								0	0	0	1.7419	1	4331	4331		62.107	5.3864	1		+		21981	14394	14244	14301	22300	22300					0.075297256146996
KTENKKVK	8	Unmodified	_KTENKKVK_					0	0	0			REV__ENSG00000172661|ENST00000623400|WASHC2C	REV__ENSG00000172661|ENST00000623400|WASHC2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	325.5376892089844	3	325.537953	973.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.785	1	15.785	15.285	16.285	0								0	0	0	1.7419	1	4239	4239		34.173	0.25091	1		+		21982	13490	14245	14302	22301	22301					0.10417735714224818
KTEPPLTSW	9	Unmodified	_KTEPPLTSW_					0	0	0			REV__ENSG00000224389|ENST00000435363|C4B	REV__ENSG00000224389|ENST00000435363|C4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7798461914062	2	529.779482	1057.54441	0.46055	0.00024399	0.63763	0.0003378	1.0982	0.00058179	529.7797191379414	22.626	0.10318	22.626	22.554	22.657	0					6	3	2	0	0	0	0.44593	1	6417	6417		37.812	0	1	106190	+		21983	17623	14246	14303	22302	22302					0.017940367233904908
KTEQLNRF	8	Unmodified	_KTEQLNRF_					0	0	0		ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2850952148438	2	518.282723	1034.55089	1.3368	0.00069285	2.7777	0.0014397	4.1146	0.0021325	518.2839308790716	34.606	0.25131	34.606	34.493	34.744	0					12	6	3	0	0	0	0.68432	1	12923	12923		35.618	1.4457	1	113270			21984	10213	14247	14304	22303	22303					0.03499974674741679
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.79583740234375	2	501.795132	1001.57571	1.6368	0.00082133	-1.0581	-0.00053094	0.57871	0.00029039	501.7946647828452	17.715	0.18973	17.715	17.602	17.792	0					12	5	3	0	0	0	0.21419	1	4257	4257		59.931	1.7009	1	170420			21985	3350	14248	14305	22304	22304					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.79498291015625	2	501.795132	1001.57571	0.47517	0.00023844	-1.0321	-0.00051791	-0.55694	-0.00027947	501.79480919577725	17.698	0.22056	17.698	17.558	17.779	0					12	6	3	0	0	0	0.082776	1	4280	4280		83.647	35.99	1	210910			21986	3350	14248	14305	22305	22305					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.86566162109375	3	334.865847	1001.57571	0.24988	8.3677E-05	-0.57311	-0.00019192	-0.32323	-0.00010824	334.865580568956	17.729	0.189	17.729	17.579	17.768	0					8	5	2	0	0	0	0.28897	1	4289	4289		50.034	13.716	1	115230			21987	3350	14248	14305	22306	22306					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.79486083984375	2	501.795132	1001.57571	0.69549	0.00034899	-1.5266	-0.00076604	-0.83111	-0.00041705	501.79429197744525	18	0.56323	18	17.658	18.221	0					25	13	4	0	0	0	0.013298	1	5194	5194		133.99	48.833	1	1953600			21988	3350	14248	14305	22307	22307					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.86572265625	3	334.865847	1001.57571	0.51875	0.00017371	-0.82009	-0.00027462	-0.30134	-0.00010091	334.86547128491367	18.003	0.44992	18.003	17.844	18.294	0					17	10	3	0	0	0	0.13726	1	5189	5189		68.626	23.604	1	435060			21989	3350	14248	14305	22308	22308					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.794921875	2	501.795132	1001.57571	0.043315	2.1735E-05	-0.52486	-0.00026337	-0.48155	-0.00024164	501.7948704312639	17.963	0.57432	17.963	17.701	18.275	0					36	11	5	0	0	0	0.0028263	1	5393	5393		169.65	68.4	1	7722500			21990	3350	14248	14305	22309	22309					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7951354980469	2	501.795132	1001.57571	-0.32122	-0.00016118	0.25635	0.00012864	-0.064861	-3.2547E-05	501.7952222124985	17.76	0.3147	17.76	17.577	17.891	0					21	7	4	0	0	0	0.021015	1	4464	4464		120.31	38.001	1	786650			21991	3350	14248	14305	22310	22310					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.79498291015625	2	501.795132	1001.57571	-0.55235	-0.00027717	-0.0048489	-2.4331E-06	-0.5572	-0.0002796	501.7951017097192	17.939	0.50722	17.939	17.683	18.19	0					30	10	5	0	0	0	0.0051572	1	5238	5238		157.34	72.184	1	6818000			21992	3350	14248	14305	22311	22311					0.07498609757476515
KTEWLRIT	8	Unmodified	_KTEWLRIT_					0	0	0			REV__nc|ENSG00000120868|O14727-5|APAF1	REV__nc|ENSG00000120868|O14727-5|APAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.3030395507812	2	523.803291	1045.59203	0.091301	4.7824E-05	-3.6316	-0.0019022	-3.5403	-0.0018544	523.8016136038739	12.54	0.25242	12.54	12.434	12.686	0					18	8	4	0	0	0	0.71588	1	2678	2678		37.159	6.6555	1	399850	+		21993	12179	14249	14306	22312	22312					0.07105735714230832
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.8092041015625	2	569.808771	1137.60299	0.10125	5.7696E-05	0.23376	0.0001332	0.33501	0.00019089	569.809025747988	21.787	0.19254	21.787	21.706	21.899	0					16	5	4	0	0	0	6.2538E-06	1	6301	6301		196.52	70.275	1	1265300			21994	6476	14250	14307	22313	22313					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	380.20831298828125	3	380.208273	1137.60299	-1.122	-0.0004266	0.73958	0.00028119	-0.38244	-0.00014541	380.2086843637308	21.787	0.15446	21.787	21.706	21.86	0					9	4	3	0	0	0	0.36432	1	6318	6318		89.561	38.033	1	180620			21995	6476	14250	14307	22314	22314					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.20819091796875	3	380.208273	1137.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.99	1	21.99	21.49	22.49	0								0	0	0	0.045399	1	7376	7376		113.67	43.272	1				21996	6476	14250	14307	22315	22315					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.8090209960938	2	569.808771	1137.60299	0.6295	0.00035869	-0.34813	-0.00019837	0.28137	0.00016033	569.8087161218814	21.861	0.19577	21.861	21.761	21.957	0					12	4	4	0	0	0	0.0089743	1	6402	6402		147.3	37.183	1	622850			21997	6476	14250	14307	22316	22316					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.8087768554688	2	569.808771	1137.60299	-1.3407	-0.00076392	1.5033	0.00085657	0.16261	9.2657E-05	569.8096925237531	21.845	0.19366	21.845	21.749	21.943	0					11	4	3	0	0	0	0.0077833	1	6415	6415		154.01	55.429	1	802760			21998	6476	14250	14307	22317	22317					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.2082214355469	3	380.208273	1137.60299	0.6503	0.00024725	-0.63331	-0.00024079	0.016991	6.4603E-06	380.2079835745456	21.979	0.16927	21.979	21.919	22.089	0					9	3	4	0	0	0	0.28855	1	7254	7254		89.561	31.315	1	1410300			21999	6476	14250	14307	22318	22318					0.039690932978373894
KTFEKELSGD	10	Unmodified	_KTFEKELSGD_					0	0	0		ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.2889404296875	2	577.290411	1152.56627	-0.12439	-7.1808E-05	-2.6975	-0.0015572	-2.8219	-0.001629	577.2891406550649	17.686	0.14919	17.686	17.614	17.763	0					12	4	4	0	0	0	0.10583	1	4471	4471		104.06	32.179	1	2204900			22000	1618	14251	14308	22319	22319					-0.0039120331871345115
KTFEKLKN	8	Unmodified	_KTFEKLKN_					0	0	0			REV__tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1	REV__tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.29803466796875	2	504.297842	1006.58113	-0.83444	-0.00042081	1.3257	0.00066853	0.49123	0.00024772	504.29877397001434	27.097	0.63456	27.097	26.866	27.501	0					31	22	2	0	0	0	0.61938	1	8717	8717		45.952	1.8352	1	70326	+		22001	21766	14252	14309	22320	22320					0.0781033333993264
KTFKQRRT	8	Unmodified	_KTFKQRRT_					0	0	0		ENST00000564638.1_1_16:87426033-87432506:+|nuORF;ENSG00000258102|ENST00000556529|MAP1LC3B2;ENSG00000140941|ENST00000268607|MAP1LC3B	ENST00000564638.1_1_16:87426033-87432506:+|nuORF	ENST00000564638.1_1_16:87426033-87432506:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8213500976562	2	532.819807	1063.62506	3.4019	0.0018126	-0.23201	-0.00012362	3.1699	0.001689	532.8195975905318	26.876	0.31503	26.876	26.772	27.087	0					13	6	3	0	0	0	0.30437	1	9562	9562		82.305	15.876	1	1130400			22002	4413	14253	14310	22321	22321					0.09579362556928572
KTFQTLVGT	9	Unmodified	_KTFQTLVGT_					0	0	0			REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.77703857421875	2	497.782025	993.549496	-1.1208	-0.00055792	-2.0613	-0.0010261	-3.1821	-0.001584	497.7826527115806	29.515	0.35425	29.515	29.377	29.731	0					27	13	3	0	0	0	0.54267	1	9654	9654		27.882	1.1893	1	344590	+		22003	13366	14254	14311	22322	22322					0.052463405860066814
KTFSEVLAEK	10	Unmodified	_KTFSEVLAEK_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A;ZC3H11A|p.H415Tfs*23|1|0.41|ENSG00000058673|chr1:203847375-203847376|-/A|frameshift_variant;ZC3H11A|p.T443Qfs*2|1|0.39|ENSG00000058673|chr1:203847462-203847462|A/-|frameshift_variant	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.31884765625	2	576.318971	1150.62339	1.5635	0.00090105	-1.8394	-0.0010601	-0.2759	-0.00015901	576.317789564447	29.657	0.13587	29.657	29.57	29.706	0					9	3	3	0	0	0	0.33224	1	10611	10611		63.694	16.037	1	362720			22004	1306	14255	14312	22323	22323					0.054102639576512956
KTFSEVLAEK	10	Unmodified	_KTFSEVLAEK_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A;ZC3H11A|p.H415Tfs*23|1|0.41|ENSG00000058673|chr1:203847375-203847376|-/A|frameshift_variant;ZC3H11A|p.T443Qfs*2|1|0.39|ENSG00000058673|chr1:203847462-203847462|A/-|frameshift_variant	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.31884765625	2	576.318971	1150.62339	0.14887	8.5798E-05	0.39427	0.00022723	0.54315	0.00031303	576.319285937543	29.608	0.16595	29.608	29.498	29.664	0					7	3	3	0	0	0	0.034064	1	10854	10854		115.23	42.353	1	588500			22005	1306	14255	14312	22324	22324					0.054102639576512956
KTFSLVTMI	9	Unmodified	_KTFSLVTMI_					0	0	0		MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant	MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant	MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.2010803222656	3	347.200061	1038.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.235	1	16.235	15.735	16.735	0								0	0	0	0.25587	1	4600	4600		42.864	7.246	1				22006	11378	14256	14313	22325	22325					0.0606074189076935
KTFSQSTHLVQ	11	Unmodified	_KTFSQSTHLVQ_					0	0	0		nc|ENSG00000290687|P0CG31|ZNF286B;ENST00000395894.6_1_17:15619323-15620601:+|nuORF;nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A	nc|ENSG00000290687|P0CG31|ZNF286B	nc|ENSG00000290687|P0CG31|ZNF286B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	638.3395385742188	2	638.338227	1274.6619	1.6697	0.0010659	0.72893	0.0004653	2.3987	0.0015312	638.3388456546943	28.092	0.42912	28.092	27.988	28.417	0					38	14	5	0	0	0	0.15663	2	8711	8711;8868		79.489	21.259	1	2001600			22007	11830	14257	14314	22326;22327	22326					0.03555569592185748
KTFSVALAEQ	10	Unmodified	_KTFSVALAEQ_					0	0	0		ENST00000522069.5_1_8:42249392-42251334:+|nuORF;ENST00000520115.5_1_8:42249392-42251757:+|nuORF;ENST00000518563.5_3_8:42249167-42251383:+|nuORF	ENST00000522069.5_1_8:42249392-42251334:+|nuORF	ENST00000522069.5_1_8:42249392-42251334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2967529296875	2	547.298039	1092.58152	0.45657	0.00024988	-3.0888	-0.0016905	-2.6322	-0.0014406	547.2965405036781	22.471	0.14553	22.471	22.371	22.516	0					9	3	3	0	0	0	0.41384	1	7311	7311		54.722	7.065	1	648100			22008	10280	14258	14315	22328	22328					0.038937082691290925
KTFTVQTTK	9	Unmodified	_KTFTVQTTK_					0	0	0		ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.300537109375	2	527.300581	1052.58661	1.2824	0.00067622	-0.46885	-0.00024722	0.81357	0.000429	527.3002601668541	19.302	0.12749	19.302	19.222	19.349	0					8	3	3	0	0	0	0.0093724	1	4963	4963		142.36	32.883	1	409100			22009	9187	14259	14316	22329	22329					0.0624201213172455
KTFTVQTTK	9	Unmodified	_KTFTVQTTK_					0	0	0		ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.3008422851562	2	527.300581	1052.58661	0.32707	0.00017247	0.81366	0.00042905	1.1407	0.00060151	527.3006597461758	19.317	0.11478	19.317	19.243	19.357	0					8	3	3	0	0	0	0.011893	1	5202	5202		136.99	58.725	1	788240			22010	9187	14259	14316	22330	22330					0.0624201213172455
KTFTVQTTK	9	Unmodified	_KTFTVQTTK_					0	0	0		ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.301025390625	2	527.300581	1052.58661	1.7567	0.00092631	-0.25282	-0.00013331	1.5039	0.000793	527.3001429983528	19.518	0.21294	19.518	19.412	19.625	0					11	4	3	0	0	0	0.099758	1	6196	6196		79.489	17.382	1	4744400			22011	9187	14259	14316	22331	22331					0.0624201213172455
KTFTVQTTK	9	Unmodified	_KTFTVQTTK_					0	0	0		ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.3008422851562	2	527.300581	1052.58661	1.235	0.00065119	-0.12042	-6.3499E-05	1.1145	0.00058769	527.3003231349976	19.36	0.18801	19.36	19.274	19.463	0					9	4	3	0	0	0	0.034688	1	5236	5236		104.42	42.316	1	517830			22012	9187	14259	14316	22332	22332					0.0624201213172455
KTFTVQTTK	9	Unmodified	_KTFTVQTTK_					0	0	0		ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	ENST00000395002.6_1_4:89744147-89744438:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.3008422851562	2	527.300581	1052.58661	1.6284	0.00085866	-0.72501	-0.0003823	0.90339	0.00047636	527.2999618047413	19.533	0.21439	19.533	19.425	19.639	0					10	4	3	0	0	0	0.0014418	1	6045	6045		178.55	57.679	1	2606000			22013	9187	14259	14316	22333	22333					0.0624201213172455
KTGAAGSSAR	10	Unmodified	_KTGAAGSSAR_					0	0	0			REV__ENST00000561933.1_1_16:68344571-68344829:-|nuORF	REV__ENST00000561933.1_1_16:68344571-68344829:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2426452636719	2	453.243598	904.472643	-0.53941	-0.00024448	-1.4951	-0.00067763	-2.0345	-0.00092211	453.2430130989856	18.596	0.18172	18.596	18.501	18.683	0					9	4	3	0	0	0	0.68194	1	5478	5478		24.232	24.232	1	360920	+		22014	20301	14260	14317	22334	22334					0.016585420895125935
KTGAAGSSAR	10	Unmodified	_KTGAAGSSAR_					0	0	0			REV__ENST00000561933.1_1_16:68344571-68344829:-|nuORF	REV__ENST00000561933.1_1_16:68344571-68344829:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2427978515625	2	453.243598	904.472643	-0.42477	-0.00019252	-1.3988	-0.000634	-1.8236	-0.00082652	453.2429592310364	18.536	0.21743	18.536	18.377	18.595	0					6	4	2	0	0	0	0.4287	1	5716	5716		53.089	53.089	1	454570	+		22015	20301	14260	14317	22335	22335					0.016585420895125935
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7774658203125	2	495.776939	989.539325	0.049523	2.4552E-05	0.67651	0.0003354	0.72604	0.00035995	495.77719743023744	17.363	0.09935	17.363	17.297	17.397	0					9	3	3	0	0	0	0.095583	1	4124	4124		80.455	5.4113	1	155940			22016	7405	14261	14318	22336	22336					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.776611328125	2	495.776939	989.539325	0.73497	0.00036438	-0.95703	-0.00047448	-0.22207	-0.0001101	495.7763338560519	17.699	0.24703	17.699	17.619	17.866	0					9	6	2	0	0	0	0.01942	1	5033	5033		122.94	21.687	1	2143900			22017	7405	14261	14318	22337	22337					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7769470214844	2	495.776939	989.539325	0.72323	0.00035856	-0.5006	-0.00024819	0.22262	0.00011037	495.77660556688755	17.642	0.11764	17.642	17.583	17.701	0					6	2	3	0	0	0	0.037712	1	5285	5285		101.46	0.20722	1	2577300			22018	7405	14261	14318	22338	22338					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7777099609375	2	495.776939	989.539325	0.032092	1.591E-05	0.5217	0.00025865	0.55379	0.00027456	495.7775883082105	17.433	0.07213	17.433	17.389	17.461	0					6	2	3	0	0	0	0.047855	1	4349	4349		96.034	10.873	1	72792			22019	7405	14261	14318	22339	22339					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.77679443359375	2	495.776939	989.539325	-0.67093	-0.00033263	0.59564	0.0002953	-0.075287	-3.7326E-05	495.77710314936445	17.64	0.16853	17.64	17.531	17.7	0					7	3	3	0	0	0	0.099758	1	5137	5137		79.489	20.707	1	693050			22020	7405	14261	14318	22340	22340					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7765808105469	2	495.776939	989.539325	0.94846	0.00047022	-1.5161	-0.00075165	-0.56764	-0.00028142	495.7758799907447	17.623	0.3192	17.623	17.515	17.834	0					12	6	3	0	0	0	0.016146	1	5128	5128		128.35	27.095	1	2344300			22021	7405	14261	14318	22341	22341					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.77679443359375	2	495.776939	989.539325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.631	1	17.631	17.131	18.131	0								0	0	0	0.018495	1	5122	5122		101.46	16.299	1				22022	7405	14261	14318	22342	22342					0.04413732860746222
KTGHVIAVK	9	Unmodified	_KTGHVIAVK_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7;ENST00000494348.1_1_19:7974966-7975513:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.8002014160156	2	476.800552	951.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.015	1	16.015	15.515	16.515	0								0	0	0	0.12601	1	3759	3759		65.465	19.513	1				22023	1572	14262	14319	22343	22343					0.10882056922423544
KTGHVIAVK	9	Unmodified	_KTGHVIAVK_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7;ENST00000494348.1_1_19:7974966-7975513:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.8001403808594	2	476.800552	951.58655	-0.63116	-0.00030094	-0.33942	-0.00016183	-0.97057	-0.00046277	476.8004667686031	16.208	0.11834	16.208	16.149	16.267	0					4	2	2	0	0	0	0.076532	1	4451	4451		85.862	27.08	1	422070			22024	1572	14262	14319	22344	22344					0.10882056922423544
KTGIRVYYS	9	Unmodified	_KTGIRVYYS_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;SOGA1|p.P1257L|1|0.31|ENSG00000149639|chr20:36794312-36794312|G/A|missense_variant;nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.804443359375	2	543.800749	1085.58694	3.6559	0.0019881	2.0081	0.001092	5.664	0.0030801	543.8018721854337	33.601	0.37547	33.601	33.466	33.842	0					12	8	3	0	0	0	0.19605	1	12790	12790		62.107	17.73	1	983130			22025	4901;11579	14263	14320	22345	22345					0.04757431851612637
KTGKALNLGYT	11	Unmodified	_KTGKALNLGYT_					0	0	0		COL6A3|p.A919T|1|0.27|ENSG00000163359|chr2:237377087-237377087|C/T|missense_variant	COL6A3|p.A919T|1|0.27|ENSG00000163359|chr2:237377087-237377087|C/T|missense_variant	COL6A3|p.A919T|1|0.27|ENSG00000163359|chr2:237377087-237377087|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.332763671875	2	583.332413	1164.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.485	1	16.485	15.985	16.985	0								0	0	0	0.38703	1	3964	3964		45.022	3.5956	1				22026	614	14264	14321	22346	22346					0.07453372568829764
KTGPGTLA	8	Unmodified	_KTGPGTLA_					0	0	0		ENST00000452284.1_1_22:21356738-21362956:+|nuORF;ENST00000436079.1_1_22:21356738-21363657:+|nuORF;ENST00000429962.1_1_22:21356738-21357321:+|nuORF	ENST00000452284.1_1_22:21356738-21362956:+|nuORF	ENST00000452284.1_1_22:21356738-21362956:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.7174072265625	2	372.716153	743.417754	3.2176	0.0011992	0.8413	0.00031357	4.0589	0.0015128	372.71630286512794	39.241	0.37238	39.241	39.141	39.513	0					15	8	3	0	0	0	0.72381	1	15501	15501		30.504	3.7075	1	312910			22027	9481	14265	14322	22347	22347					0.035781552889034174
KTGPVLAK	8	Unmodified	_KTGPVLAK_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.2634582519531	2	407.263271	812.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.448	1	16.448	15.948	16.948	0								0	0	0	1.7419	1	4460	4460		64.207	12.872	1				22028	4780	14266	14323	22348	22348					0.09823294111038194
KTGQSPTQII	10	Unmodified	_KTGQSPTQII_					0	0	0			REV__ADAM9|p.R596Q|1|0.42|ENSG00000168615|chr8:39077317-39077317|G/A|missense_variant	REV__ADAM9|p.R596Q|1|0.42|ENSG00000168615|chr8:39077317-39077317|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8037109375	2	536.803488	1071.59242	2.1324	0.0011447	-0.63561	-0.0003412	1.4968	0.00080348	536.8030838834595	15.984	0.18094	15.984	15.937	16.118	0					5	4	2	0	0	0	0.55031	1	4275	4275		28.081	0	1	345330	+		22029	12067	14267	14324	22349	22349					0.059491106434506946
KTGRPLSQP	9	Unmodified	_KTGRPLSQP_					0	0	0			REV__ENSG00000167580|ENST00000199280|AQP2	REV__ENSG00000167580|ENST00000199280|AQP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2849426269531	2	492.285266	982.555979	-2.6552	-0.0013071	1.6019	0.00078859	-1.0533	-0.00051851	492.2862997577074	18.573	0.11204	18.573	18.466	18.578	0					6	3	2	0	0	0	0.3269	1	4865	4865		32.812	12.816	1	82841	+		22030	16197	14268	14325	22350	22350					0.06400278537375925
KTGTKNTY	8	Unmodified	_KTGTKNTY_					0	0	0			REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7430419921875	2	456.742899	911.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.419	1	14.419	13.919	14.919	0								0	0	0	1.7419	1	2968	2968		42.396	1.618	1		+		22031	19921	14269	14326	22351	22351					0.011969080007588673
KTGTKNTY	8	Unmodified	_KTGTKNTY_					0	0	0			REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.74298095703125	2	456.742899	911.471246	0.75685	0.00034569	-0.32485	-0.00014837	0.432	0.00019731	456.74272024208847	14.7	0.25876	14.7	14.655	14.913	0					10	6	3	0	0	0	0.2678	1	3648	3648		93.195	7.3336	1	275460	+		22032	19921	14269	14326	22352	22352					0.011969080007588673
KTGTKNTY	8	Unmodified	_KTGTKNTY_					0	0	0			REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7426452636719	2	456.742899	911.471246	0.72159	0.00032958	-1.0909	-0.00049825	-0.3693	-0.00016867	456.7423987376015	14.688	0.21524	14.688	14.582	14.797	0					6	4	2	0	0	0	0.6088	1	3876	3876		47.657	3.2801	1	730240	+		22033	19921	14269	14326	22353	22353					0.011969080007588673
KTGTKNTY	8	Unmodified	_KTGTKNTY_					0	0	0			REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.74285888671875	2	456.742899	911.471246	-0.43231	-0.00019745	0.14408	6.5807E-05	-0.28823	-0.00013165	456.7428548445962	14.669	0.17047	14.669	14.558	14.728	0					5	3	2	0	0	0	0.66095	1	3713	3713		39.253	3.6345	1	164570	+		22034	19921	14269	14326	22354	22354					0.011969080007588673
KTGTLIEKR	9	Unmodified	_KTGTLIEKR_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3219604492188	2	523.321848	1044.62914	0.088581	4.6356E-05	0.74617	0.00039049	0.83475	0.00043684	523.3222339197738	17.484	0.12398	17.484	17.415	17.539	0					7	3	3	0	0	0	0.035106	1	4937	4937		104.01	10.87	1	574000	+		22035	17228	14270	14327	22355	22355					0.10861407259972111
KTGTLIEKR	9	Unmodified	_KTGTLIEKR_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3221435546875	2	523.321848	1044.62914	1.7924	0.00093799	-1.361	-0.00071224	0.43138	0.00022575	523.3211753850999	17.44	0.24963	17.44	17.351	17.6	0					10	5	3	0	0	0	0.070005	1	5192	5192		88.177	17.361	1	1202700	+		22036	17228	14270	14327	22356	22356					0.10861407259972111
KTGTLTENK	9	Unmodified	_KTGTLTENK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant;ENSG00000206190|ENST00000555815|ATP10A;nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D;ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant;ATP10D|p.L863*|1|0.21|ENSG00000145246|chr4:47560990-47560990|T/-|frameshift_variant;ATP10D|p.L863Ffs*3|1|0.28|ENSG00000145246|chr4:47560989-47560990|-/T|frameshift_variant;ATP10D|p.L1148*|1|0.28|ENSG00000145246|chr4:47576846-47576846|T/-|frameshift_variant	ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000145246|Q9P241-2|ATP10D	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2740478515625	2	496.274564	990.534574	0.72541	0.00036	-1.0668	-0.00052943	-0.3414	-0.00016943	496.2739594256922	14.147	0.13442	14.147	14.061	14.196	0					9	3	3	0	0	0	0.054723	1	3380	3380		93.598	13.885	1	431720			22037	3069;4662	14271	14328	22357	22357					0.038928487179987314
KTGTLTENK	9	Unmodified	_KTGTLTENK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant;ENSG00000206190|ENST00000555815|ATP10A;nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D;ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant;ATP10D|p.L863*|1|0.21|ENSG00000145246|chr4:47560990-47560990|T/-|frameshift_variant;ATP10D|p.L863Ffs*3|1|0.28|ENSG00000145246|chr4:47560989-47560990|-/T|frameshift_variant;ATP10D|p.L1148*|1|0.28|ENSG00000145246|chr4:47576846-47576846|T/-|frameshift_variant	ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000145246|Q9P241-2|ATP10D	ENSG00000118322|ENST00000327245|ATP10B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.76312255859375	2	496.274564	990.534574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.063	1	14.063	13.563	14.563	0								0	0	0	0.0011674	1	3567	3567		126.24	33.099	1				22038	3069;4662	14271	14328	22358	22358					0.038928487179987314
KTGTLTENK	9	Unmodified	_KTGTLTENK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant;ENSG00000206190|ENST00000555815|ATP10A;nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D;ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant;ATP10D|p.L863*|1|0.21|ENSG00000145246|chr4:47560990-47560990|T/-|frameshift_variant;ATP10D|p.L863Ffs*3|1|0.28|ENSG00000145246|chr4:47560989-47560990|-/T|frameshift_variant;ATP10D|p.L1148*|1|0.28|ENSG00000145246|chr4:47576846-47576846|T/-|frameshift_variant	ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000145246|Q9P241-2|ATP10D	ENSG00000118322|ENST00000327245|ATP10B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2743225097656	2	496.274564	990.534574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.103	1	14.103	13.603	14.603	0								0	0	0	0.080575	1	3585	3585		77.318	21.813	1				22039	3069;4662	14271	14328	22359	22359					0.038928487179987314
KTGTLTENK	9	Unmodified	_KTGTLTENK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant;ENSG00000206190|ENST00000555815|ATP10A;nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D;ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant;ATP10D|p.L863*|1|0.21|ENSG00000145246|chr4:47560990-47560990|T/-|frameshift_variant;ATP10D|p.L863Ffs*3|1|0.28|ENSG00000145246|chr4:47560989-47560990|-/T|frameshift_variant;ATP10D|p.L1148*|1|0.28|ENSG00000145246|chr4:47576846-47576846|T/-|frameshift_variant	ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000145246|Q9P241-2|ATP10D	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2745056152344	2	496.274564	990.534574	0.96137	0.00047711	-1.1225	-0.00055709	-0.16117	-7.9984E-05	496.27406074281737	14.095	0.1128	14.095	14.042	14.154	0					4	2	2	0	0	0	0.020674	1	3438	3438		120.87	12.781	1	791040			22040	3069;4662	14271	14328	22360	22360					0.038928487179987314
KTGVVRCCVGQ	11	Unmodified	_KTGVVRCCVGQ_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2977905273438	2	575.296993	1148.57943	1.6074	0.00092473	0.98596	0.00056722	2.5934	0.001492	575.2974884411487	30.919	0.25739	30.919	30.835	31.092	0					12	6	3	0	0	0	0.7767	1	11196	11196		20.03	0.92695	1	305580			22041	3920	14272	14329	22361	22361					0.011086329880299672
KTHGKSTLK	9	Unmodified	_KTHGKSTLK_					0	0	0		PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant;ENSG00000197724|ENST00000359246|PHF2;PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant;PHF2|p.K492Dfs*21|1|0.2|ENSG00000197724|chr9:93660330-93660331|AA/-|frameshift_variant	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.30059814453125	2	500.300916	998.587279	0.89844	0.00044949	-1.3538	-0.0006773	-0.45534	-0.00022781	500.3001757688654	11.196	0.076338	11.196	11.158	11.235	0					4	2	2	0	0	0	0.28504	1	2250	2250		51.528	2.0862	1	283220			22042	7491	14273	14330	22362	22362					0.08792851571467963
KTHKRSPQH	9	Unmodified	_KTHKRSPQH_					0	0	0			REV__ZSCAN1|p.L265R|1|0.23|ENSG00000152467|chr19:58053618-58053618|T/G|missense_variant	REV__ZSCAN1|p.L265R|1|0.23|ENSG00000152467|chr19:58053618-58053618|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.8106689453125	2	559.812513	1117.61047	0.12373	6.9264E-05	-1.3505	-0.00075605	-1.2268	-0.00068679	559.81171775107	22.074	0.37945	22.074	21.889	22.269	0					20	12	2	0	0	0	0.41113	1	6422	6422		40.778	23.413	1	179430	+		22043	22337	14274	14331	22363	22363					0.05637290408799345
KTIDASVSK	9	Unmodified	_KTIDASVSK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7719421386719	2	474.771657	947.528761	0.95105	0.00045153	-0.41177	-0.0001955	0.53928	0.00025604	474.771482921127	16.745	0.094702	16.745	16.7	16.795	0					5	3	2	0	0	0	0.054723	1	3874	3874		93.598	5.9011	1	105350			22044	6311	14275	14332	22364	22364					0.05289750206327426
KTIDASVSK	9	Unmodified	_KTIDASVSK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7712707519531	2	474.771657	947.528761	0.65417	0.00031058	-1.3288	-0.00063086	-0.67459	-0.00032028	474.7710476754309	17.077	0.22208	17.077	16.991	17.213	0					9	5	3	0	0	0	0.0054332	1	4745	4745		156.16	57.579	1	636490			22045	6311	14275	14332	22365	22365					0.05289750206327426
KTIDASVSK	9	Unmodified	_KTIDASVSK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7710876464844	2	474.771657	947.528761	-0.12039	-5.716E-05	-0.58307	-0.00027682	-0.70346	-0.00033398	474.7713599443968	17.021	0.16787	17.021	16.913	17.081	0					8	3	3	0	0	0	0.01077	1	4969	4969		139.38	46.187	1	2108100			22046	6311	14275	14332	22366	22366					0.05289750206327426
KTIDASVSK	9	Unmodified	_KTIDASVSK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7713317871094	2	474.771657	947.528761	-0.10085	-4.7883E-05	-0.11056	-5.2492E-05	-0.21142	-0.00010037	474.7714488712564	16.825	0.093842	16.825	16.779	16.873	0					4	2	2	0	0	0	0.13907	1	4078	4078		70.399	17.462	1	164720			22047	6311	14275	14332	22367	22367					0.05289750206327426
KTIDASVSK	9	Unmodified	_KTIDASVSK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7713317871094	2	474.771657	947.528761	-0.603	-0.00028629	0.27014	0.00012826	-0.33286	-0.00015803	474.7717856849484	16.996	0.21582	16.996	16.891	17.107	0					9	4	3	0	0	0	0.0066803	1	4811	4811		150.81	43.803	1	2154600			22048	6311	14275	14332	22368	22368					0.05289750206327426
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.5481262207031	3	359.548518	1075.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.795	1	14.795	14.295	15.295	0								0	0	0	0.060926	1	3108	3108		88.134	40.906	1				22049	6311	14276	14333	22369	22369					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.8196411132812	2	538.819138	1075.62372	0.85331	0.00045978	-0.77681	-0.00041856	0.076503	4.1221E-05	538.8185939872836	14.792	0.091268	14.792	14.732	14.823	0					8	4	2	0	0	0	0.24271	1	3101	3101		79.07	2.9003	1	89015			22050	6311	14276	14333	22370	22370					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.5484313964844	3	359.548518	1075.62372	0.72569	0.00026092	-0.80729	-0.00029026	-0.081595	-2.9337E-05	359.5481745246375	15.076	0.10949	15.076	15.023	15.133	0					4	2	2	0	0	0	0.0331	1	3825	3825		115.91	43.819	1	1644800			22051	6311	14276	14333	22371	22371					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8192749023438	2	538.819138	1075.62372	0.24442	0.0001317	0.67264	0.00036243	0.91706	0.00049413	538.8191151476401	15.061	0.14962	15.061	14.967	15.117	0					7	3	3	0	0	0	0.0075484	1	3820	3820		156.16	49.478	1	1005000			22052	6311	14276	14333	22372	22372					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.5484619140625	3	359.548518	1075.62372	-0.91467	-0.00032887	0.35116	0.00012626	-0.56352	-0.00020261	359.54874356982475	14.82	0.053678	14.82	14.778	14.832	0					4	2	2	0	0	0	0.33468	1	3272	3272		63.426	21.03	1	59807			22053	6311	14276	14333	22373	22373					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.8200073242188	2	538.819138	1075.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.841	1	14.841	14.341	15.341	0								0	0	0	0.16253	1	3281	3281		74.165	19.389	1				22054	6311	14276	14333	22374	22374					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.882568359375	3	359.548518	1075.62372	-0.093821	-3.3733E-05	0.50445	0.00018138	0.41063	0.00014764	360.218182343441	14.839	0.042635	14.839	14.813	14.855	0					6	2	3	0	0	0	0.3029	1	3220	3220		66.92	25.84	1	37693			22055	6311	14276	14333	22375	22375					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.8197021484375	2	538.819138	1075.62372	-1.4636	-0.00078859	2.7256	0.0014686	1.262	0.00067999	538.8206160188272	14.845	0.087425	14.845	14.806	14.894	0					8	4	2	0	0	0	0.15289	1	3217	3217		83.647	30.71	1	118610			22056	6311	14276	14333	22376	22376					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.5484313964844	3	359.548518	1075.62372	1.2573	0.00045206	-1.245	-0.00044762	0.012347	4.4395E-06	359.54794347531043	15.003	0.16834	15.003	14.945	15.113	0					7	3	3	0	0	0	0.010251	1	3872	3872		141.89	48.444	1	975810			22057	6311	14276	14333	22377	22377					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8194580078125	2	538.819138	1075.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.061	1	15.061	14.561	15.561	0								0	0	0	0.087136	1	3888	3888		88.134	7.6791	1				22058	6311	14276	14333	22378	22378					0.08893683677524677
KTIDRLAGK	9	Unmodified	_KTIDRLAGK_					0	0	0		nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3088073730469	2	501.308741	1000.60293	-0.9701	-0.00048632	0.74144	0.00037169	-0.22866	-0.00011463	501.3092976924005	16.847	0.10522	16.847	16.772	16.877	0					8	4	2	0	0	0	0.16962	1	4113	4113		66.962	10.241	1	129360			22059	11749	14277	14334	22379	22379					0.10265138088504955
KTIDRLAGK	9	Unmodified	_KTIDRLAGK_					0	0	0		nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.54150390625	3	334.541586	1000.60293	0.38433	0.00012858	-0.5449	-0.00018229	-0.16057	-5.3717E-05	334.54135754672666	17.021	0.2189	17.021	16.913	17.132	0					6	4	2	0	0	0	0.085655	1	4991	4991		82.75	23.969	1	547600			22060	11749	14277	14334	22380	22380					0.10265138088504955
KTIDRLAGK	9	Unmodified	_KTIDRLAGK_					0	0	0		nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.54156494140625	3	334.541586	1000.60293	-0.010877	-3.6388E-06	-0.084377	-2.8228E-05	-0.095254	-3.1866E-05	334.5415686188787	16.996	0.11584	16.996	16.94	17.056	0					6	2	3	0	0	0	0.04067	1	4833	4833		98.582	28.954	1	394800			22061	11749	14277	14334	22381	22381					0.10265138088504955
KTIEAGIGK	9	Unmodified	_KTIEAGIGK_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55004007-55004829:+|nuORF	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.77642822265625	2	458.776742	915.538931	0.79322	0.00036391	-1.5905	-0.00072968	-0.79727	-0.00036577	458.77613039533065	19.406	0.10645	19.406	19.308	19.414	0					4	2	2	0	0	0	0.12278	1	5844	5844		74.165	7.7357	1	500940			22062	2069	14278	14335	22382	22382					0.07778357931567825
KTIEAGIGK	9	Unmodified	_KTIEAGIGK_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55004007-55004829:+|nuORF	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7763671875	2	458.776742	915.538931	-0.15788	-7.2432E-05	-1.792	-0.00082213	-1.9499	-0.00089456	458.77584596759544	19.289	0.11625	19.289	19.231	19.347	0					4	2	2	0	0	0	0.11411	1	6082	6082		76.17	3.2904	1	269030			22063	2069	14278	14335	22383	22383					0.07778357931567825
KTIEQSLLE	9	Unmodified	_KTIEQSLLE_					0	0	0		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3018798828125	2	530.797872	1059.58119	1.725	0.0009156	4.2511	0.0022565	5.9761	0.0031721	531.3007396373188	18.502	0.36722	18.502	18.344	18.711	0					10	7	2	0	0	0	0.11411	1	5704	5704		69.628	27.231	1	660020			22064	3638	14279	14336	22384	22384					0.05378288549309218
KTIGIHAKY	9	Unmodified	_KTIGIHAKY_					0	0	0		ENST00000538658.5_1_11:95546665-95550979:+|nuORF	ENST00000538658.5_1_11:95546665-95550979:+|nuORF	ENST00000538658.5_1_11:95546665-95550979:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.8056030273438	2	515.805834	1029.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.794	1	41.794	41.294	42.294	0								0	0	0	0.24724	1	16427	16427		44.117	1.7207	1				22065	10514	14280	14337	22385	22385					0.08350039576839663
KTIGLMRMQ	9	Unmodified	_KTIGLMRMQ_					0	0	0		ENST00000520632.5_1_8:96044323-96048661:+|nuORF;ENST00000518608.5_1_8:96037415-96056782:+|nuORF;nc|ENSG00000156170|Q330K2-2|NDUFAF6;ENSG00000156170|ENST00000396124|NDUFAF6	ENST00000520632.5_1_8:96044323-96048661:+|nuORF	ENST00000520632.5_1_8:96044323-96048661:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7992553710938	2	539.299004	1076.58346	1.9855	0.0010708	-1.5395	-0.00083026	0.44594	0.00024049	539.2983919168838	27.505	0.88377	27.505	27.378	28.262	0					69	21	4	0	0	0	0.49718	1	9683	9683		19.104	0	1	3452400			22066	5159	14281	14338	22386	22386					0.048227224817310343
KTIGNVPI	8	Unmodified	_KTIGNVPI_					0	0	0		ENSG00000112333|ENST00000368986|NR2E1;nc|ENSG00000112333|Q9Y466-2|NR2E1	ENSG00000112333|ENST00000368986|NR2E1	ENSG00000112333|ENST00000368986|NR2E1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.2610168457031	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.211	1	16.211	15.711	16.711	0								0	0	0	1.7419	1	3845	3845		42.474	1.9018	1				22067	2736	14282	14339	22387	22387					0.08026990248424681
KTIGVACIK	9	Unmodified	_KTIGVACIK_					0	0	0			REV__ENST00000469700.1_1_20:47707305-47712721:+|nuORF	REV__ENST00000469700.1_1_20:47707305-47712721:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.779296875	2	466.783513	931.552473	-0.50173	-0.0002342	-2.9334	-0.0013693	-3.4351	-0.0016035	466.78221608739915	17.615	0.32107	17.615	17.43	17.751	0					10	6	2	0	0	0	0.11898	1	5091	5091		75.043	14.071	1	1179000	+		22068	14384	14283	14340	22388	22388					0.08395892439136787
KTIIFVETK	9	Unmodified	_KTIIFVETK_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8291015625	2	539.828975	1077.6434	0.26243	0.00014167	0.33603	0.0001814	0.59845	0.00032306	539.8290861669238	29.281	0.28815	29.281	29.157	29.445	0					19	7	3	0	0	0	0.0093724	1	10426	10426		142.36	49.218	1	643060			22069	1982	14284	14341	22389	22389					0.10768059688257381
KTIIFVETK	9	Unmodified	_KTIIFVETK_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.8292846679688	2	539.828975	1077.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.995	1	28.995	28.495	29.495	0								0	0	0	0.10497	1	9403	9403		70.399	20.863	1				22070	1982	14284	14341	22390	22390					0.10768059688257381
KTIIFVETK	9	Unmodified	_KTIIFVETK_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8292236328125	2	539.828975	1077.6434	0.30527	0.00016479	0.45608	0.0002462	0.76135	0.000411	539.8291272321841	29.237	0.23727	29.237	29.129	29.367	0					12	5	3	0	0	0	0.01776	1	10810	10810		125.68	40.521	1	442850			22071	1982	14284	14341	22391	22391					0.10768059688257381
KTIIFVETK	9	Unmodified	_KTIIFVETK_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.8291625976562	2	539.828975	1077.6434	-1.4781	-0.00079793	2.7627	0.0014914	1.2846	0.00069347	539.8306293986786	29.051	0.15913	29.051	28.953	29.112	0					8	4	2	0	0	0	0.24169	1	9733	9733		56.632	3.6955	1	92082			22072	1982	14284	14341	22392	22392					0.10768059688257381
KTIIFVETK	9	Unmodified	_KTIIFVETK_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8296508789062	2	539.828975	1077.6434	3.4503	0.0018626	-2.3359	-0.001261	1.1145	0.00060162	539.8274612354661	29.181	0.26455	29.181	29.076	29.341	0					12	5	3	0	0	0	0.07561	1	10674	10674		99.013	24.848	1	702690			22073	1982	14284	14341	22393	22393					0.10768059688257381
KTIKKTARREQ	11	Unmodified	_KTIKKTARREQ_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.277099609375	3	453.612404	1357.81538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.933	1	13.933	13.433	14.433	0								0	0	0	0.42265	1	3285	3285		32.034	4.3902	1				22074	3989	14285	14342	22394	22394					0.15078604428481412
KTILMRPEG	9	Oxidation (M)	_KTILM(Oxidation (M))RPEG_		KTILM(1)RPEG		KTILM(64)RPEG	0	0	1			REV__ENSG00000189023|ENST00000399988|MAGEB16	REV__ENSG00000189023|ENST00000399988|MAGEB16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7935180664062	2	530.794609	1059.57467	-1.2241	-0.00064976	-0.71833	-0.00038129	-1.9425	-0.001031	530.7940846407131	20.517	0.21603	20.517	20.383	20.599	0					9	5	3	0	0	0	0.17854	1	5790	5790		64.207	64.207	1	327840	+		22075	17205	14286	14343	22395	22395		656			0.04726072116909563
KTINGFSSI	9	Unmodified	_KTINGFSSI_					0	0	0			REV__ENST00000263239.6_1_2:118589017-118589167:+|nuORF	REV__ENST00000263239.6_1_2:118589017-118589167:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7662048339844	2	483.766374	965.518196	-0.60774	-0.000294	0.39805	0.00019256	-0.20969	-0.00010144	483.76650911862237	17.14	0.11888	17.14	17.081	17.2	0					4	2	2	0	0	0	0.19605	1	5050	5050		62.107	3.8775	1	272140	+		22076	18043	14287	14344	22396	22396					0.03405767551907957
KTINQVKKK	9	Unmodified	_KTINQVKKK_					0	0	0			REV__SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant	REV__SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8536987304688	2	543.853316	1085.69208	1.9924	0.0010836	-1.3838	-0.00075258	0.6086	0.00033099	543.852572061415	15.939	0.16673	15.939	15.88	16.047	0					8	3	3	0	0	0	0.067603	1	4326	4326		72.879	14.097	1	563900	+		22077	13279	14288	14345	22397	22397					0.152659730480309
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF;NCKAP1|p.M725Kfs*19|1|0.04|ENSG00000061676|chr2:182953311-182953312|-/AGAGTATT|frameshift_variant	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7933044433594	2	494.792924	987.571294	-0.02151	-1.0643E-05	0.33606	0.00016628	0.31455	0.00015564	494.79317515264694	15.958	0.088619	15.958	15.898	15.987	0					7	4	2	0	0	0	0.046074	1	3550	3550		101.25	8.0572	1	118380			22078	1325	14289	14346	22398	22398					0.07701145334567627
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF;NCKAP1|p.M725Kfs*19|1|0.04|ENSG00000061676|chr2:182953311-182953312|-/AGAGTATT|frameshift_variant	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7926025390625	2	494.792924	987.571294	0.75033	0.00037126	-1.1182	-0.00055327	-0.36785	-0.00018201	494.7923322530476	16.278	0.18143	16.278	16.194	16.375	0					8	4	3	0	0	0	0.01942	1	4387	4387		129.42	25.364	1	1464400			22079	1325	14289	14346	22399	22399					0.07701145334567627
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF;NCKAP1|p.M725Kfs*19|1|0.04|ENSG00000061676|chr2:182953311-182953312|-/AGAGTATT|frameshift_variant	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.79278564453125	2	494.792924	987.571294	-0.43199	-0.00021375	0.08634	4.272E-05	-0.34565	-0.00017103	494.79297500714944	16.272	0.1381	16.272	16.18	16.318	0					5	3	2	0	0	0	0.064446	1	4379	4379		74.165	9.9577	1	779950			22080	1325	14289	14346	22400	22400					0.07701145334567627
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF;NCKAP1|p.M725Kfs*19|1|0.04|ENSG00000061676|chr2:182953311-182953312|-/AGAGTATT|frameshift_variant	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7926940917969	2	494.792924	987.571294	-1.2605	-0.0006237	1.6589	0.00082083	0.39842	0.00019714	494.79375878967716	15.984	0.092173	15.984	15.928	16.02	0					7	3	3	0	0	0	0.022269	1	3738	3738		112.3	48.088	1	250220			22081	1325	14289	14346	22401	22401					0.07701145334567627
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF;NCKAP1|p.M725Kfs*19|1|0.04|ENSG00000061676|chr2:182953311-182953312|-/AGAGTATT|frameshift_variant	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7931213378906	2	494.792924	987.571294	0.91604	0.00045325	-0.61978	-0.00030666	0.29626	0.00014659	494.7926785017279	16.191	0.16825	16.191	16.131	16.3	0					7	3	3	0	0	0	0.00076124	1	4441	4441		195.57	62.815	1	2112800			22082	1325	14289	14346	22402	22402					0.07701145334567627
KTISTNLLR	9	Unmodified	_KTISTNLLR_					0	0	0		ENST00000540418.5_1_12:68690747-68696570:-|nuORF	ENST00000540418.5_1_12:68690747-68696570:-|nuORF	ENST00000540418.5_1_12:68690747-68696570:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.322265625	2	523.321848	1044.62914	0.76593	0.00040083	0.5608	0.00029348	1.3267	0.0006943	523.322431825129	17.17	0.10396	17.17	17.099	17.203	0					5	3	2	0	0	0	0.19605	1	4037	4037		62.107	0.41614	1	91223			22083	10532	14290	14347	22403	22403					0.10861407259972111
KTIVFVETK	9	Unmodified	_KTIVFVETK_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8214721679688	2	532.82115	1063.62775	0.40808	0.00021743	0.34054	0.00018145	0.74862	0.00039888	532.8213766143363	26.662	0.19105	26.662	26.581	26.772	0					11	6	3	0	0	0	0.067603	1	8131	8131		89.029	17.151	1	280060			22084	763	14291	14348	22404	22404					0.09847773171213703
KTIVFVETK	9	Unmodified	_KTIVFVETK_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8216552734375	2	532.82115	1063.62775	0.13063	6.9603E-05	0.31034	0.00016535	0.44097	0.00023496	532.8212652342271	26.922	0.25097	26.922	26.835	27.086	0					12	6	3	0	0	0	0.0046931	1	9336	9336		159.34	71.639	1	1500400			22085	763	14291	14348	22405	22405					0.09847773171213703
KTIVFVETK	9	Unmodified	_KTIVFVETK_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.8209838867188	2	532.82115	1063.62775	0.26286	0.00014006	0.32708	0.00017427	0.58994	0.00031433	532.8211542289783	26.656	0.14005	26.656	26.594	26.734	0					11	5	3	0	0	0	0.19891	1	8400	8400		61.765	5.1323	1	175540			22086	763	14291	14348	22406	22406					0.09847773171213703
KTIVFVETK	9	Unmodified	_KTIVFVETK_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.8214111328125	2	532.82115	1063.62775	0.28922	0.0001541	0.045165	2.4065E-05	0.33438	0.00017817	532.8212191861512	26.903	0.36342	26.903	26.644	27.008	0					15	7	3	0	0	0	0.0009224	1	9694	9694		183.72	62.854	1	828760			22087	763	14291	14348	22407	22407					0.09847773171213703
KTIVFVETK	9	Unmodified	_KTIVFVETK_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.822265625	2	532.82115	1063.62775	-1.2854	-0.0006849	2.5277	0.0013468	1.2422	0.00066188	532.8226712677806	26.729	0.15117	26.729	26.625	26.776	0					8	3	3	0	0	0	0.11635	1	8655	8655		75.652	17.422	1	165540			22088	763	14291	14348	22408	22408					0.09847773171213703
KTKDNILAK	9	Unmodified	_KTKDNILAK_					0	0	0		tr|U7SZ64|U7SZ64_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00860PE=4SV=1	tr|U7SZ64|U7SZ64_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00860PE=4SV=1	tr|U7SZ64|U7SZ64_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00860PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.816650390625	2	515.816399	1029.61824	1.4386	0.00074205	-0.84908	-0.00043797	0.58952	0.00030408	515.8159301399677	18.826	0.090702	18.826	18.792	18.883	0					6	2	3	0	0	0	0.095583	1	5856	5856		80.455	7.5754	1	2393800			22089	22889	14292	14349	22409	22409					0.10462004885698661
KTKFVDGVSTV	11	Unmodified	_KTKFVDGVSTV_					0	0	0		ENSG00000136824|ENST00000374793|SMC2	ENSG00000136824|ENST00000374793|SMC2	ENSG00000136824|ENST00000374793|SMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.2255859375	3	394.223923	1179.64994	0.115	4.5337E-05	3.103	0.0012233	3.218	0.0012686	394.2255583349682	19.487	0.21283	19.487	19.33	19.543	0					5	4	2	0	0	0	0.69004	1	6183	6183		28.577	0.93281	1	225050			22090	4112	14293	14350	22410	22410					0.06729952848991161
KTKGPLKQK	9	Unmodified	_KTKGPLKQK_					0	0	0		ENST00000524244.5_1_5:159849319-159849927:+|nuORF;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000524244.5_1_5:159849319-159849927:+|nuORF	ENST00000524244.5_1_5:159849319-159849927:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.3344116210938	2	514.334759	1026.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.934	1	11.934	11.434	12.434	0								0	0	0	0.040385	1	2406	2406		90.601	32.371	1				22091	5710	14294	14351	22411	22411					0.14270301502278926
KTKKIYNE	8	Unmodified	_KTKKIYNE_					0	0	0		RGS4|p.A111T|1|0.13|ENSG00000117152|chr1:163073575-163073575|G/A|missense_variant	RGS4|p.A111T|1|0.13|ENSG00000117152|chr1:163073575-163073575|G/A|missense_variant	RGS4|p.A111T|1|0.13|ENSG00000117152|chr1:163073575-163073575|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2954711914062	2	512.295299	1022.57605	-0.45152	-0.00023131	0.26749	0.00013704	-0.18403	-9.4277E-05	512.2954963552842	22.294	0.26416	22.294	22.237	22.501	0					8	5	2	0	0	0	0.62915	1	7562	7562		42.396	18.873	1	298090			22092	22340	14295	14352	22412	22412					0.06566029477323809
KTKKQNLE	8	Unmodified	_KTKKQNLE_					0	0	0		ENSG00000187889|ENST00000343433|FYB2	ENSG00000187889|ENST00000343433|FYB2	ENSG00000187889|ENST00000343433|FYB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7926940917969	2	494.792924	987.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.053	1	16.053	15.553	16.553	0								0	0	0	1.7419	1	3723	3723		29.15	7.1897	1				22093	7224	14296	14353	22413	22413					0.07701145334556259
KTKKSTDRT	9	Unmodified	_KTKKSTDRT_					0	0	0			REV__nc|ENSG00000171320|Q56NI9-2|ESCO2	REV__nc|ENSG00000171320|Q56NI9-2|ESCO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8104858398438	2	532.806562	1063.59857	2.4607	0.0013111	2.9072	0.0015489	5.3678	0.00286	532.8076929277415	27.118	0.14707	27.118	27.054	27.201	0					12	5	3	0	0	0	0.42902	1	8326	8326		39.253	0.44669	1	72780	+		22094	16408	14297	14354	22414	22414					0.06931628874940543
KTKKVVESK	9	Unmodified	_KTKKVVESK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.5570068359375	3	349.557125	1045.64954	1.4543	0.00050836	-1.5394	-0.00053812	-0.085137	-2.976E-05	349.55657795458217	17.157	0.11903	17.157	17.098	17.217	0					6	2	3	0	0	0	0.38666	1	5060	5060		42.864	2.8061	1	749200			22095	7636	14298	14355	22415	22415					0.12854577919802068
KTKLGKFTQ	9	Unmodified	_KTKLGKFTQ_					0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.819091796875	2	525.818941	1049.62333	1.9554	0.0010282	-1.3203	-0.00069424	0.63511	0.00033395	525.8181906171667	29.171	0.25087	29.171	29.046	29.296	0					14	6	3	0	0	0	0.040209	1	10381	10381		82.75	17.285	1	618800	+		22096	17826	14299	14356	22416	22416					0.10050308748327552
KTKLGKFTQ	9	Unmodified	_KTKLGKFTQ_					0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8190307617188	2	525.818941	1049.62333	0.97614	0.00051327	-0.0034978	-1.8392E-06	0.97264	0.00051143	525.8189263810324	29.171	0.286	29.171	29.022	29.308	0					14	6	3	0	0	0	0.15593	1	10761	10761		68.846	15.757	1	440550	+		22097	17826	14299	14356	22417	22417					0.10050308748327552
KTKLGKFTQ	9	Unmodified	_KTKLGKFTQ_					0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8185424804688	2	525.818941	1049.62333	0.58658	0.00030843	-0.61293	-0.00032229	-0.026349	-1.3855E-05	525.8185694341942	29.068	0.31562	29.068	28.959	29.274	0					14	6	3	0	0	0	0.099758	1	10616	10616		72.879	2.063	1	895470	+		22098	17826	14299	14356	22418	22418					0.10050308748327552
KTKMKQMTL	9	Unmodified	_KTKMKQMTL_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.213134765625	3	370.212084	1107.61442	3.1952	0.0011829	-0.48209	-0.00017848	2.7131	0.0010044	370.21191741833417	31.199	0.50867	31.199	31.093	31.602	0					25	10	4	0	0	0	0.33044	1	11627	11627		46.457	46.457	1	5358900			22099	277	14300	14357	22419	22419					0.06491875795995838
KTKNADVL	8	Unmodified	_KTKNADVL_					0	0	0		tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.76080322265625	2	444.761092	887.507631	-2.7933	-0.0012424	2.0577	0.00091521	-0.73558	-0.00032716	444.76210019467646	32.52	0.069931	32.52	32.469	32.539	0					4	2	2	0	0	0	0.58597	1	11317	11317		51.335	5.3835	1	34628			22100	22960	14301	14358	22420	22420					0.059377848974691005
KTKNKLSSDQL	11	Unmodified	_KTKNKLSSDQL_					0	0	0			REV__ENST00000323571.8_1_17:38438263-38438389:+|nuORF	REV__ENST00000323571.8_1_17:38438263-38438389:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	631.3611450195312	2	631.359159	1260.70376	3.1094	0.0019631	-0.0076236	-4.8133E-06	3.1017	0.0019583	631.3591995019391	16.523	2.4361	16.523	16.316	18.752	0					96	49	3	0	0	0	0.058993	1	4559	4559		93.598	5.4206	1	3242100	+		22101	18341	14302	14359	22421	22421					0.08384125280713306
KTKRMSLSD	9	Unmodified	_KTKRMSLSD_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.293701171875	2	533.289691	1064.56483	3.3931	0.0018095	-2.0598	-0.0010985	1.3333	0.00071102	533.2884947831545	42.719	0.44746	42.719	42.535	42.983	0					32	13	4	0	0	0	0.4966	1	17027	17027		32.812	3.6424	1	370780			22102	3503	14303	14360	22422	22422					0.035128841115238174
KTKTHAPLI	9	Unmodified	_KTKTHAPLI_					0	0	0			REV__ENSG00000079841|ENST00000521978|RIMS1	REV__ENSG00000079841|ENST00000521978|RIMS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.8133850097656	2	504.813659	1007.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.82	1	16.82	16.32	17.32	0								0	0	0	0.35507	1	3903	3903		24.203	1.1603	1		+		22103	13288	14304	14361	22423	22423					0.10926326093886018
KTKVDARVQ	9	Unmodified	_KTKVDARVQ_					0	0	0			REV__ENST00000520626.5_1_8:22059101-22069238:+|nuORF	REV__ENST00000520626.5_1_8:22059101-22069238:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8118286132812	2	522.811648	1043.60874	1.6541	0.0008648	-1.612	-0.00084275	0.042179	2.2052E-05	522.8110783855816	29.106	0.17205	29.106	29.046	29.218	0					6	4	2	0	0	0	0.41113	1	10367	10367		40.778	11.629	1	122300	+		22104	16262	14305	14362	22424	22424					0.08868236600164892
KTKYVQQI	8	Unmodified	_KTKYVQQI_					0	0	0			REV__ENSG00000178279|ENST00000312693|TNP2	REV__ENSG00000178279|ENST00000312693|TNP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2970275878906	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.401	1	26.401	25.901	26.901	0								0	0	0	1.7419	1	8300	8300		55.504	4.1688	1		+		22105	16730	14306	14363	22425	22425					0.0781033333993264
KTLAEHQQ	8	Unmodified	_KTLAEHQQ_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7536315917969	2	477.753798	953.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.794	1	14.794	14.294	15.294	0								0	0	0	1.7419	1	3682	3682		85.161	7.8432	1				22106	3001	14307	14364	22426	22426					0.014437127493238222
KTLAGLVVQL	10	Unmodified	_KTLAGLVVQL_					0	0	0		SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;ENSG00000173473|ENST00000254480|SMARCC1	SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant	SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.337158203125	2	521.336967	1040.65938	1.0451	0.00054486	0.10795	5.6278E-05	1.1531	0.00060114	521.3370609519015	33.065	0.22929	33.065	32.963	33.192	0					18	7	3	0	0	0	0.25899	1	11562	11562		72.243	2.6156	1	252610			22107	6428	14308	14365	22427	22427					0.14067765925165077
KTLDAEVVEK	10	Unmodified	_KTLDAEVVEK_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.P411Rfs*67|1|0.23|ENSG00000185049|chr4:1983918-1983918|G/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3178100585938	2	566.316428	1130.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.989	1	22.989	22.489	23.489	0								0	0	0	0.13836	1	6586	6586		72.096	19.159	1				22108	7060	14309	14366	22428	22428					0.05821960095045142
KTLDAEVVEK	10	Unmodified	_KTLDAEVVEK_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.P411Rfs*67|1|0.23|ENSG00000185049|chr4:1983918-1983918|G/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3170776367188	2	566.316428	1130.6183	1.7691	0.0010019	-0.67089	-0.00037994	1.0982	0.00062193	566.3160310750205	23.316	0.19508	23.316	23.222	23.417	0					13	4	4	0	0	0	0.0089743	1	7711	7711		147.3	58.274	1	987430			22109	7060	14309	14366	22429	22429					0.05821960095045142
KTLDAEVVEK	10	Unmodified	_KTLDAEVVEK_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.P411Rfs*67|1|0.23|ENSG00000185049|chr4:1983918-1983918|G/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.316650390625	2	566.316428	1130.6183	0.13209	7.4804E-05	0.73014	0.00041349	0.86223	0.00048829	566.3168300651178	23.031	0.16026	23.031	22.938	23.098	0					9	5	2	0	0	0	0.099683	1	6873	6873		95.483	33.376	1	161680			22110	7060	14309	14366	22430	22430					0.05821960095045142
KTLDAEVVEK	10	Unmodified	_KTLDAEVVEK_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.P411Rfs*67|1|0.23|ENSG00000185049|chr4:1983918-1983918|G/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.3167724609375	2	566.316428	1130.6183	0.77844	0.00044084	-0.34658	-0.00019627	0.43186	0.00024457	566.3163011727355	23.085	0.18039	23.085	22.992	23.173	0					6	4	2	0	0	0	0.28724	1	6978	6978		68.786	23.763	1	184550			22111	7060	14309	14366	22431	22431					0.05821960095045142
KTLDAEVVEK	10	Unmodified	_KTLDAEVVEK_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.P411Rfs*67|1|0.23|ENSG00000185049|chr4:1983918-1983918|G/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3171997070312	2	566.316428	1130.6183	1.6958	0.00096036	-0.5374	-0.00030434	1.1584	0.00065602	566.3161701995189	23.226	0.16759	23.226	23.117	23.284	0					9	3	3	0	0	0	0.018819	1	7857	7857		126.03	53.146	1	1331900			22112	7060	14309	14366	22432	22432					0.05821960095045142
KTLDPLGKVV	10	Unmodified	_KTLDPLGKVV_					0	0	0			REV__AACS|p.K234T|1|0.35|ENSG00000081760|chr12:125103015-125103015|A/C|missense_variant	REV__AACS|p.K234T|1|0.35|ENSG00000081760|chr12:125103015-125103015|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3345947265625	2	535.334424	1068.6543	1.2039	0.00064447	-0.86406	-0.00046256	0.3398	0.00018191	535.3341777806912	27.972	0.16574	27.972	27.863	28.029	0					5	3	2	0	0	0	0.65051	1	10208	10208		28.081	0	1	118600	+		22113	12017	14310	14367	22433	22433					0.12271462062562932
KTLDPLVI	8	Unmodified	_KTLDPLVI_					0	0	0		MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B;MROH2B|p.S691Lfs*6|1|0.45|ENSG00000171495|chr5:41038879-41038879|A/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.78387451171875	2	449.784036	897.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.594	1	39.594	39.094	40.094	0								0	0	0	1.7419	1	15580	15580		44.117	0	1				22114	6301	14311	14368	22434	22434					0.10064430079705744
KTLDQAIMK	9	Unmodified	_KTLDQAIMK_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2974243164062	2	524.296985	1046.57942	1.8084	0.00094813	-0.95186	-0.00049905	0.85653	0.00044907	524.2971545604363	24.866	0.37641	24.866	24.698	25.074	0					15	9	3	0	0	0	0.37744	1	8440	8440		43.651	0.78652	1	461560			22115	2806	14312	14369	22435	22435					0.05798956259673105
KTLDQAKAVLK	11	Unmodified	_KTLDQAKAVLK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.5868225097656	3	405.587084	1213.73942	0.61865	0.00025091	-0.73046	-0.00029627	-0.11182	-4.5352E-05	405.586695342764	22.523	0.13476	22.523	22.434	22.569	0					11	4	3	0	0	0	0.37395	1	6380	6380		54.343	10.925	1	171330			22116	3988	14313	14370	22436	22436					0.14110207528347019
KTLDQAKAVLK	11	Unmodified	_KTLDQAKAVLK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.3793334960938	2	607.876988	1213.73942	0.15488	9.4146E-05	0.023068	1.4023E-05	0.17795	0.00010817	608.378952704788	22.522	0.1681	22.522	22.46	22.628	0					9	5	3	0	0	0	0.18749	1	6390	6390		66.92	13.831	1	72159			22117	3988	14313	14370	22437	22437					0.14110207528347019
KTLDQAKAVLK	11	Unmodified	_KTLDQAKAVLK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.5870056152344	3	405.587084	1213.73942	0.045486	1.8449E-05	-0.26671	-0.00010817	-0.22122	-8.9725E-05	405.58695030759844	22.719	0.2142	22.719	22.614	22.828	0					11	4	4	0	0	0	0.043502	1	7740	7740		108.31	35.433	1	2077100			22118	3988	14313	14370	22438	22438					0.14110207528347019
KTLDQAKAVLK	11	Unmodified	_KTLDQAKAVLK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.58709716796875	3	405.587084	1213.73942	0.14403	5.8418E-05	-0.21215	-8.6045E-05	-0.068116	-2.7627E-05	405.5869896798181	22.627	0.15318	22.627	22.529	22.682	0					7	3	3	0	0	0	0.4771	1	6781	6781		45.908	0.88592	1	157100			22119	3988	14313	14370	22439	22439					0.14110207528347019
KTLDQAKAVLK	11	Unmodified	_KTLDQAKAVLK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.58697509765625	3	405.587084	1213.73942	-0.57096	-0.00023157	0.32218	0.00013067	-0.24878	-0.0001009	405.587219637764	22.747	0.41775	22.747	22.589	23.007	0					18	8	4	0	0	0	0.0038156	1	7599	7599		128.51	64.98	1	1763400			22120	3988	14313	14370	22440	22440					0.14110207528347019
KTLDSALFY	9	Unmodified	_KTLDSALFY_					0	0	0		ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2821044921875	2	529.281857	1056.54916	3.4525	0.0018273	-2.1892	-0.0011587	1.2632	0.00066859	529.2800155050024	43.33	0.56494	43.33	43.134	43.699	0					26	19	3	0	0	0	0.38666	1	17328	17328		42.864	9.3713	1	132170			22121	5457	14314	14371	22441	22441					0.023149208661379816
KTLDSYCR	8	Carbamidomethyl (C)	_KTLDSYC(Carbamidomethyl (C))R_	KTLDSYC(1)R		KTLDSYC(42)R		0	1	0			REV__ZNF727|p.C268Y|1|0.17|ENSG00000214652|chr7:64077852-64077852|G/A|missense_variant	REV__ZNF727|p.C268Y|1|0.17|ENSG00000214652|chr7:64077852-64077852|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.7537841796875	2	521.752941	1041.49133	0.78646	0.00041034	-0.42108	-0.0002197	0.36538	0.00019064	521.7527548406534	14.624	0.10441	14.624	14.58	14.685	0					6	4	2	0	0	0	0.64144	1	3037	3037		42.396	6.7778	1	78247	+		22122	22335	14315	14372	22442	22442	749				-0.02775664330943073
KTLDVFNI	8	Unmodified	_KTLDVFNI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.D1169Ifs*15|1|0.38|ENSG00000129003|chr15:61962469-61962469|C/-|frameshift_variant;VPS13C|p.S463Vfs*3|1|0.39|ENSG00000129003|chr15:61991770-61991771|-/T|frameshift_variant;VPS13C|p.S1021Hfs*3|1|0.08|ENSG00000129003|chr15:61964852-61964852|A/-|frameshift_variant;VPS13C|p.N1066Ifs*25|2|0.27|ENSG00000129003|chr15:61964716-61964716|T/-|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant;VPS13A|p.K1113Rfs*30|1|0.13|ENSG00000197969|chr9:77283645-77283645|A/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000129003|Q709C8-4|VPS13C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2713317871094	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.457	1	44.457	43.957	44.957	0								0	0	0	1.7419	1	17811	17811		39.253	2.2244	1				22123	3575;7514	14316	14373	22443	22443					0.05170955557275647
KTLEDFRVK	9	Unmodified	_KTLEDFRVK_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.22052001953125	3	379.220513	1134.63971	0.81743	0.00030999	-0.99438	-0.00037709	-0.17695	-6.7103E-05	379.220037785702	25.201	0.49289	25.201	25.102	25.595	0					16	11	2	0	0	0	0.30841	1	8592	8592		49.536	9.4779	1	603370			22124	3455	14317	14374	22444	22444					0.07777389914417654
KTLEDFRVK	9	Unmodified	_KTLEDFRVK_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2204895019531	3	379.220513	1134.63971	-0.46422	-0.00017604	0.47126	0.00017871	0.0070432	2.6709E-06	379.22062756219594	25.119	0.46889	25.119	25.012	25.481	0					18	9	3	0	0	0	0.15163	1	8766	8766		67.494	14.405	1	891610			22125	3455	14317	14374	22445	22445					0.07777389914417654
KTLEIQGK	8	Unmodified	_KTLEIQGK_					0	0	0		nc|ENSG00000172780|Q86YS6-2|RAB43;ENST00000561790.1_1_16:46660318-46660894:-|nuORF;ENSG00000172780|ENST00000315150|RAB43	nc|ENSG00000172780|Q86YS6-2|RAB43	nc|ENSG00000172780|Q86YS6-2|RAB43	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.77630615234375	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.081	1	19.081	18.581	19.581	0								0	0	0	1.7419	1	4869	4869		52.937	4.9772	1				22126	6382	14318	14375	22446	22446					0.07778357931567825
KTLELLNNIR	10	Unmodified	_KTLELLNNIR_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant;nc|ENSG00000081913|O60346-2|PHLPP1;PHLPP1|p.T1236Nfs*38|2|0.39|ENSG00000081913|chr18:62972653-62972654|-/A|frameshift_variant	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.3668823242188	2	607.366787	1212.71902	-0.57385	-0.00034854	0.79005	0.00047985	0.2162	0.00013131	607.3673098113694	17.852	0.36581	17.852	17.762	18.128	0					16	8	3	0	0	0	0.55031	1	5121	5121		28.081	0	1	680350			22127	1665	14319	14376	22447	22447					0.12117036868539799
KTLESAVVK	9	Unmodified	_KTLESAVVK_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;ENST00000492157.5_1_9:79438526-79520879:-|nuORF	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.79754638671875	2	487.797675	973.580796	1.2638	0.00061649	-1.7622	-0.00085961	-0.4984	-0.00024312	487.7967117146007	20.898	0.14064	20.898	20.838	20.979	0					8	4	2	0	0	0	0.12418	1	5658	5658		73.841	10.307	1	489560			22128	2459	14320	14377	22448	22448					0.09294913620090028
KTLESAVVK	9	Unmodified	_KTLESAVVK_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;ENST00000492157.5_1_9:79438526-79520879:-|nuORF	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7973937988281	2	487.797675	973.580796	-0.081104	-3.9563E-05	-0.54326	-0.000265	-0.62436	-0.00030456	487.797361085733	21.136	0.21228	21.136	21.028	21.24	0					12	4	4	0	0	0	0.01942	1	6947	6947		122.94	29.744	1	3913100			22129	2459	14320	14377	22449	22449					0.09294913620090028
KTLESAVVK	9	Unmodified	_KTLESAVVK_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;ENST00000492157.5_1_9:79438526-79520879:-|nuORF	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7972717285156	2	487.797675	973.580796	0.46564	0.00022714	-1.5454	-0.00075385	-1.0798	-0.00052671	487.7970166236129	21.001	0.1235	21.001	20.927	21.05	0					5	3	2	0	0	0	0.24334	1	6019	6019		56.434	10.462	1	159310			22130	2459	14320	14377	22450	22450					0.09294913620090028
KTLESAVVK	9	Unmodified	_KTLESAVVK_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;ENST00000492157.5_1_9:79438526-79520879:-|nuORF	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.79742431640625	2	487.797675	973.580796	-0.52916	-0.00025812	0.17287	8.4327E-05	-0.35629	-0.0001738	487.797693110285	21.135	0.16368	21.135	21.042	21.206	0					9	3	4	0	0	0	0.015496	1	6825	6825		129.42	41.667	1	1006600			22131	2459	14320	14377	22451	22451					0.09294913620090028
KTLESQVKY	9	Unmodified	_KTLESQVKY_					0	0	0		nc|ENSG00000120669|Q9NX45-3|SOHLH2;nc|ENSG00000242715|A6NNP5-5|CCDC169;nc|ENSG00000242715|A6NNP5-3|CCDC169;nc|ENSG00000242715|A6NNP5-6|CCDC169;CCDC169|p.A130Dfs*22|1|0.27|ENSG00000242715|chr13:36254070-36254070|G/-|frameshift_variant;ENSG00000242715|ENST00000239859|CCDC169;nc|ENSG00000242715|A6NNP5-4|CCDC169	nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.3068237304688	2	548.305864	1094.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.369	1	35.369	34.869	35.869	0								0	0	0	0.3119	1	13648	13648		32.812	0.061884	1				22132	11498	14321	14378	22452	22452					0.05365994786188821
KTLFFGLCK	9	Carbamidomethyl (C)	_KTLFFGLC(Carbamidomethyl (C))K_	KTLFFGLC(1)K		KTLFFGLC(80)K		0	1	0		ENST00000298139.5_1_8:30891382-30915948:+|nuORF	ENST00000298139.5_1_8:30891382-30915948:+|nuORF	ENST00000298139.5_1_8:30891382-30915948:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.310791015625	2	557.309895	1112.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.16	1	38.16	37.66	38.66	0								0	0	0	0.069826	1	14488	14488		80.455	25.678	1				22133	8471	14322	14379	22453	22453	369				0.053438505019585136
KTLFFGLCK	9	Carbamidomethyl (C)	_KTLFFGLC(Carbamidomethyl (C))K_	KTLFFGLC(1)K		KTLFFGLC(99)K		0	1	0		ENST00000298139.5_1_8:30891382-30915948:+|nuORF	ENST00000298139.5_1_8:30891382-30915948:+|nuORF	ENST00000298139.5_1_8:30891382-30915948:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.310791015625	2	557.309895	1112.60524	3.4919	0.0019461	0.052951	2.951E-05	3.5449	0.0019756	557.3090099233581	38.165	0.55952	38.165	37.92	38.48	0					33	12	3	0	0	0	0.04067	1	14922	14922		98.582	64.66	1	557300			22134	8471	14322	14379	22454	22454	369				0.053438505019585136
KTLGPILKK	9	Unmodified	_KTLGPILKK_					0	0	0		ENST00000466459.5_1_7:112097053-112108063:+|nuORF;nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1	ENST00000466459.5_1_7:112097053-112108063:+|nuORF	ENST00000466459.5_1_7:112097053-112108063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.2304382324219	3	333.23046	996.669552	0.98647	0.00032872	-0.91322	-0.00030431	0.07325	2.4409E-05	333.2301117896803	20.218	0.11121	20.218	20.164	20.275	0					4	2	2	0	0	0	0.037924	1	6246	6246		101.25	31.625	1	478200			22135	982	14323	14380	22455	22455					0.17108373650421527
KTLGPILKK	9	Unmodified	_KTLGPILKK_					0	0	0		ENST00000466459.5_1_7:112097053-112108063:+|nuORF;nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1	ENST00000466459.5_1_7:112097053-112108063:+|nuORF	ENST00000466459.5_1_7:112097053-112108063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.2304382324219	3	333.23046	996.669552	0.38872	0.00012953	-0.33612	-0.000112	0.052601	1.7528E-05	333.2302684238173	20.137	0.21796	20.137	20.028	20.246	0					8	4	3	0	0	0	0.04067	1	6490	6490		98.582	43.86	1	315940			22136	982	14323	14380	22456	22456					0.17108373650421527
KTLHSQVK	8	Unmodified	_KTLHSQVK_					0	0	0		ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7821044921875	2	470.782359	939.550165	0.15602	7.345E-05	-0.63469	-0.0002988	-0.47868	-0.00022535	470.78205457321985	19.929	0.34101	19.929	19.823	20.164	0					12	7	2	0	0	0	0.39125	1	6110	6110		71.877	1.0613	1	1914900			22137	4587	14324	14381	22457	22457					0.07797180025715988
KTLKYREAC	9	Unmodified	_KTLKYREAC_					0	0	0		BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.A1564T|1|0.1|ENSG00000139618|chr13:32339045-32339045|G/A|missense_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.3021240234375	2	556.300059	1110.58556	1.8095	0.0010066	1.4137	0.00078646	3.2233	0.0017931	556.301053440132	13.957	0.089549	13.957	13.897	13.987	0					8	2	4	0	0	0	0.27249	1	3302	3302		52.937	15.125	1	197120			22138	315	14325	14382	22458	22458					0.03469474491203073
KTLLRPER	8	Unmodified	_KTLLRPER_					0	0	0		nc|ENSG00000196104|Q9BQ16-9|SPOCK3;nc|ENSG00000196104|Q9BQ16-7|SPOCK3;nc|ENSG00000196104|Q9BQ16-2|SPOCK3;nc|ENSG00000196104|Q9BQ16-5|SPOCK3;nc|ENSG00000196104|Q9BQ16-6|SPOCK3;nc|ENSG00000196104|Q9BQ16-4|SPOCK3;ENSG00000196104|ENST00000357545|SPOCK3;nc|ENSG00000196104|Q9BQ16|SPOCK3	nc|ENSG00000196104|Q9BQ16-9|SPOCK3	nc|ENSG00000196104|Q9BQ16-9|SPOCK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.8163757324219	2	506.816733	1011.61891	0.85509	0.00043337	-0.8889	-0.00045051	-0.033813	-1.7137E-05	506.81594224694743	14.248	0.20572	14.248	14.144	14.349	0					12	5	3	0	0	0	0.78978	1	3415	3415		21.96	0	1	63694			22139	7323	14326	14383	22459	22459					0.11356844325405291
KTLNDSLKK	9	Unmodified	_KTLNDSLKK_					0	0	0		nc|ENSG00000135205|Q8IYE0-2|CCDC146;CCDC146|p.E671Qfs*21|1|0.06|ENSG00000135205|chr7:77282647-77282648|-/CAGAGGCAGA|frameshift_variant;CCDC146|p.F933Lfs*10|1|0.43|ENSG00000135205|chr7:77294794-77294794|T/-|frameshift_variant;ENSG00000135205|ENST00000285871|CCDC146	nc|ENSG00000135205|Q8IYE0-2|CCDC146	nc|ENSG00000135205|Q8IYE0-2|CCDC146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.8143920898438	2	523.813856	1045.61316	0.52372	0.00027433	0.074958	3.9264E-05	0.59868	0.0003136	523.8139035319056	19.317	0.21353	19.317	19.243	19.456	0					16	6	4	0	0	0	0.016683	1	5201	5201		127.46	5.2857	1	2223200			22140	397	14327	14384	22460	22460					0.0921770102308983
KTLNDSLKK	9	Unmodified	_KTLNDSLKK_					0	0	0		nc|ENSG00000135205|Q8IYE0-2|CCDC146;CCDC146|p.E671Qfs*21|1|0.06|ENSG00000135205|chr7:77282647-77282648|-/CAGAGGCAGA|frameshift_variant;CCDC146|p.F933Lfs*10|1|0.43|ENSG00000135205|chr7:77294794-77294794|T/-|frameshift_variant;ENSG00000135205|ENST00000285871|CCDC146	nc|ENSG00000135205|Q8IYE0-2|CCDC146	nc|ENSG00000135205|Q8IYE0-2|CCDC146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.814208984375	2	523.813856	1045.61316	1.1243	0.00058892	-0.55012	-0.00028816	0.57418	0.00030076	523.8135898421132	19.36	0.18801	19.36	19.274	19.463	0					10	4	4	0	0	0	0.0071053	1	5251	5251		148.99	5.1	1	1104000			22141	397	14327	14384	22461	22461					0.0921770102308983
KTLPMLGMIS	10	Oxidation (M)	_KTLPM(Oxidation (M))LGMIS_		KTLPM(0.996)LGM(0.004)IS		KTLPM(24)LGM(-24)IS	0	0	1			REV__ENSG00000136928|ENST00000259455|GABBR2	REV__ENSG00000136928|ENST00000259455|GABBR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.8014526367188	2	553.801045	1105.58754	1.3151	0.00072833	-0.5461	-0.00030243	0.76904	0.00042589	553.800796192895	26.94	0.17492	26.94	26.872	27.046	0					6	5	2	0	0	0	0.36476	1	8254	8254		60.118	16.001	2	94304	+		22142	14891	14328	14385	22462	22462		561			0.0389676718480132
KTLSPRTLQ	9	Unmodified	_KTLSPRTLQ_					0	0	0		nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF	nc|ENSG00000148120|Q8N6M6-4|AOPEP	nc|ENSG00000148120|Q8N6M6-4|AOPEP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.54498291015625	3	348.545108	1042.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.545	1	13.545	13.045	14.045	0								0	0	0	0.14211	1	3106	3106		61.691	10.499	1				22143	4810	14329	14386	22463	22463					0.09389120742957857
KTLSPRTLQ	9	Unmodified	_KTLSPRTLQ_					0	0	0		nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF	nc|ENSG00000148120|Q8N6M6-4|AOPEP	nc|ENSG00000148120|Q8N6M6-4|AOPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.314453125	2	522.314023	1042.61349	1.7857	0.00093269	-1.1928	-0.00062302	0.59288	0.00030967	522.3133520481647	13.549	0.27688	13.549	13.376	13.653	0					14	6	3	0	0	0	0.12278	1	3313	3313		58.23	0	1	828030			22144	4810	14329	14386	22464	22464					0.09389120742957857
KTLSPRTLQ	9	Unmodified	_KTLSPRTLQ_					0	0	0		nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF	nc|ENSG00000148120|Q8N6M6-4|AOPEP	nc|ENSG00000148120|Q8N6M6-4|AOPEP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5450744628906	3	348.545108	1042.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.575	1	13.575	13.075	14.075	0								0	0	0	0.30009	1	3335	3335		35.152	4.5832	1				22145	4810	14329	14386	22465	22465					0.09389120742957857
KTLSPRTLQ	9	Unmodified	_KTLSPRTLQ_					0	0	0		nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF	nc|ENSG00000148120|Q8N6M6-4|AOPEP	nc|ENSG00000148120|Q8N6M6-4|AOPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.314208984375	2	522.314023	1042.61349	1.6245	0.00084849	-1.2414	-0.0006484	0.38308	0.00020009	522.3133176963553	13.473	0.18882	13.473	13.336	13.524	0					7	4	2	0	0	0	0.070005	1	3145	3145		62.107	0	1	869650			22146	4810	14329	14386	22466	22466					0.09389120742957857
KTLSPRTLQ	9	Unmodified	_KTLSPRTLQ_					0	0	0		nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF	nc|ENSG00000148120|Q8N6M6-4|AOPEP	nc|ENSG00000148120|Q8N6M6-4|AOPEP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.54498291015625	3	348.545108	1042.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.492	1	13.492	12.992	13.992	0								0	0	0	0.241	1	3144	3144		45.022	0	1				22147	4810	14329	14386	22467	22467					0.09389120742957857
KTLVSASHGK	10	Unmodified	_KTLVSASHGK_					0	0	0			REV__ENST00000533409.1_1_11:59951353-59951413:-|nuORF	REV__ENST00000533409.1_1_11:59951353-59951413:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2985229492188	2	514.298373	1026.58219	3.2045	0.0016481	-3.6634	-0.0018841	-0.45881	-0.00023596	514.2968113849657	19.912	0.21931	19.912	19.808	20.027	0					9	4	3	0	0	0	0.27065	1	6231	6231		70.816	6.6089	1	657030	+		22148	20082	14330	14387	22468	22468					0.0699654770885445
KTMAPHNSPL	10	Unmodified	_KTMAPHNSPL_					0	0	0			REV__ENSG00000141198|ENST00000575882|TOM1L1	REV__ENSG00000141198|ENST00000575882|TOM1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2853393554688	2	548.284408	1094.55426	1.6335	0.00089561	-0.54094	-0.00029659	1.0925	0.00059902	548.2843021498304	21.417	0.083267	21.417	21.386	21.469	0					6	3	2	0	0	0	0.60281	1	5906	5906		33.922	1.9668	1	56922	+		22149	15106	14331	14388	22469	22469					0.01076901457099666
KTMDVSKVKLK	11	Unmodified	_KTMDVSKVKLK_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST;REST|p.S578Vfs*7|3|0.26|ENSG00000084093|chr4:56930584-56930584|A/-|frameshift_variant;REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.26007080078125	3	426.260091	1275.75844	1.0537	0.00044914	-1.4224	-0.00060633	-0.36877	-0.00015719	426.2595709349725	21.034	0.1677	21.034	20.926	21.093	0					10	3	4	0	0	0	0.36579	1	6793	6793		55.258	20.757	1	622730			22150	1711	14332	14389	22470	22470					0.13159420827764734
KTMKMRGQ	8	Oxidation (M)	_KTMKM(Oxidation (M))RGQ_		KTM(0.026)KM(0.974)RGQ		KTM(-16)KM(16)RGQ	0	0	1		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.26129150390625	2	498.259879	994.505205	2.9151	0.0014525	0.2126	0.00010593	3.1277	0.0015584	498.25993259465815	22.564	0.41891	22.564	22.353	22.772	0					15	8	3	0	0	0	0.3961	1	7534	7534		71.296	7.9894	2	2988900			22151	3444	14333	14390	22471	22471		149			0.0077328989652869495
KTMMKNAQK	9	Unmodified	_KTMMKNAQK_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2886962890625	2	540.288637	1078.56272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.826	1	12.826	12.326	13.326	0								0	0	0	0.28666	1	2783	2783		37.812	0.65241	1				22152	2504	14334	14391	22472	22472					0.026581321020785253
KTMPTTFNR	9	Unmodified	_KTMPTTFNR_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.284912109375	2	548.284408	1094.55426	1.8479	0.0010132	-0.74628	-0.00040917	1.1016	0.00060401	548.2840780633037	21.742	0.18434	21.742	21.653	21.837	0					7	4	2	0	0	0	0.020674	1	6966	6966		120.87	43.551	1	706460			22153	4252	14335	14392	22473	22473					0.01076901457099666
KTMPTTFNR	9	Unmodified	_KTMPTTFNR_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2848510742188	2	548.284408	1094.55426	1.8646	0.0010223	-1.1747	-0.00064407	0.68989	0.00037825	548.2838049859979	21.679	0.16732	21.679	21.571	21.738	0					8	3	3	0	0	0	0.24334	1	7109	7109		56.434	6.8977	1	745170			22154	4252	14335	14392	22474	22474					0.01076901457099666
KTMSKRKNSI	10	Oxidation (M)	_KTM(Oxidation (M))SKRKNSI_		KTM(1)SKRKNSI		KTM(46)SKRKNSI	0	0	1			REV__nc|ENSG00000108312|P17480-2|UBTF	REV__nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.8447875976562	2	604.842622	1207.67069	3.0122	0.0018219	0.29461	0.0001782	3.3068	0.0020001	604.8429090533045	28.186	1.1166	28.186	27.926	29.043	0					52	22	5	0	0	0	0.49411	1	10190	10190		45.972	12.051	1	3879000	+		22155	13871	14336	14393	22475	22475		524			0.07516219957005887
KTMYEVFQR	9	Unmodified	_KTMYEVFQR_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2056884765625	3	401.205986	1200.59613	0.94079	0.00037745	-2.051	-0.00082288	-1.1102	-0.00044543	401.20507165467257	31.884	0.20965	31.884	31.779	31.988	0					8	5	2	0	0	0	0.40353	1	11653	11653		41.427	2.673	1	127930			22156	7431	14337	14394	22476	22476					0.003854571456031408
KTNAGPRDLC	10	Unmodified	_KTNAGPRDLC_					0	0	0		ENST00000482672.1_1_1:161123787-161126762:+|nuORF	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7694091796875	2	537.771665	1073.52878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.229	1	41.229	40.729	41.729	0								0	0	0	0.35072	1	16215	16215		42.864	6.4175	1				22157	9971	14338	14395	22477	22477					-0.0050457306531370705
KTNAIISLK	9	Unmodified	_KTNAIISLK_					0	0	0		ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.3133850097656	2	494.313492	986.612431	0.75851	0.00037494	-1.0475	-0.00051781	-0.28903	-0.00014287	494.3130133095352	26.045	0.30148	26.045	25.957	26.259	0					15	7	3	0	0	0	0.024312	1	8946	8946		114.86	32.108	1	741950			22158	10519	14339	14396	22478	22478					0.11858906374050093
KTNAIISLK	9	Unmodified	_KTNAIISLK_					0	0	0		ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.3133239746094	2	494.313492	986.612431	-0.045724	-2.2602E-05	-0.75545	-0.00037343	-0.80117	-0.00039603	494.3132045859211	25.996	0.11652	25.996	25.934	26.051	0					6	2	3	0	0	0	0.0059342	1	9263	9263		154.01	15.949	1	345710			22159	10519	14339	14396	22479	22479					0.11858906374050093
KTNAIISLK	9	Unmodified	_KTNAIISLK_					0	0	0		ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.3132019042969	2	494.313492	986.612431	-0.63591	-0.00031434	0.16925	8.3663E-05	-0.46666	-0.00023068	494.3135544912677	25.958	0.26886	25.958	25.849	26.117	0					9	5	3	0	0	0	0.13109	1	9123	9123		72.243	10.552	1	560350			22160	10519	14339	14396	22480	22480					0.11858906374050093
KTNAIISLK	9	Unmodified	_KTNAIISLK_					0	0	0		ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	ENST00000539028.1_1_12:10010098-10010200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.3133850097656	2	494.313492	986.612431	0.90128	0.00044551	-0.96667	-0.00047784	-0.065391	-3.2324E-05	494.31298746258113	25.992	0.2192	25.992	25.882	26.101	0					9	4	3	0	0	0	0.18505	1	9140	9140		63.426	15.467	1	535640			22161	10519	14339	14396	22481	22481					0.11858906374050093
KTNDKEDQEQ	10	Unmodified	_KTNDKEDQEQ_					0	0	0			REV__ENST00000515325.5_1_4:56465315-56502750:-|nuORF	REV__ENST00000515325.5_1_4:56465315-56502750:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	617.7815551757812	2	617.780938	1233.54732	-0.29624	-0.00018301	0.55659	0.00034385	0.26036	0.00016084	617.7817590860559	24.939	0.20731	24.939	24.852	25.06	0					17	5	5	0	0	0	0.03454	1	8463	8463		114.89	10.838	1	1391300	+		22162	13898	14340	14397	22482	22482					-0.060107846804157816
KTNDKEDQEQ	10	Unmodified	_KTNDKEDQEQ_					0	0	0			REV__ENST00000515325.5_1_4:56465315-56502750:-|nuORF	REV__ENST00000515325.5_1_4:56465315-56502750:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	617.7816162109375	2	617.780938	1233.54732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.874	1	24.874	24.374	25.374	0								0	0	0	0.01889	1	8637	8637		120.31	10.476	1		+		22163	13898	14340	14397	22483	22483					-0.060107846804157816
KTNEFAPLLR	10	Unmodified	_KTNEFAPLLR_					0	0	0			REV__nc|ENSG00000134109|Q92611-2|EDEM1	REV__nc|ENSG00000134109|Q92611-2|EDEM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8419799804688	2	594.840405	1187.66626	1.6348	0.00097243	0.86527	0.0005147	2.5001	0.0014871	594.8409262040034	15.789	0.21841	15.789	15.63	15.849	0					9	4	3	0	0	0	0.30252	1	4254	4254		54.776	3.5836	1	402960	+		22164	14729	14341	14398	22484	22484					0.07993078805748155
KTNFTSIP	8	Unmodified	_KTNFTSIP_					0	0	0		ENSG00000102057|ENST00000218176|KCND1	ENSG00000102057|ENST00000218176|KCND1	ENSG00000102057|ENST00000218176|KCND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.24700927734375	2	454.247818	906.481082	-0.12912	-5.8653E-05	-0.26558	-0.00012064	-0.3947	-0.00017929	454.24764929825903	24.286	0.71281	24.286	23.915	24.628	0					39	14	4	0	0	0	0.69548	1	8367	8367		34.173	0	1	1422100			22165	2152	14342	14399	22485	22485					0.024100960061332444
KTNGAFAKY	9	Unmodified	_KTNGAFAKY_					0	0	0			REV__EPHA6|p.S388Y|1|0.19|ENSG00000080224|chr3:97226312-97226312|C/A|missense_variant	REV__EPHA6|p.S388Y|1|0.19|ENSG00000080224|chr3:97226312-97226312|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2661437988281	2	500.266542	998.51853	-0.048087	-2.4056E-05	-0.30812	-0.00015414	-0.35621	-0.0001782	500.2661517109219	34.484	0.12925	34.484	34.415	34.544	0					6	5	2	0	0	0	0.45358	1	11280	11280		37.159	6.6555	1	32997	+		22166	13292	14343	14400	22486	22486					0.019211872717505685
KTNGAFAKY	9	Unmodified	_KTNGAFAKY_					0	0	0			REV__EPHA6|p.S388Y|1|0.19|ENSG00000080224|chr3:97226312-97226312|C/A|missense_variant	REV__EPHA6|p.S388Y|1|0.19|ENSG00000080224|chr3:97226312-97226312|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.26654052734375	2	500.266542	998.51853	-0.16483	-8.2459E-05	0.41656	0.00020839	0.25173	0.00012593	500.26673112630215	34.74	0.327	34.74	34.521	34.848	0					12	8	2	0	0	0	0.33044	1	12972	12972		47.657	5.2612	1	196850	+		22167	13292	14343	14400	22487	22487					0.019211872717505685
KTNLTSVTK	9	Unmodified	_KTNLTSVTK_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;HTT|p.R1412H|1|0.18|ENSG00000197386|chr4:3174789-3174789|G/A|missense_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2925720214844	2	496.292756	990.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.864	1	17.864	17.364	18.364	0								0	0	0	0.0537	1	4564	4564		85.161	0.2453	1				22168	11216	14344	14401	22488	22488					0.07529725614722338
KTNLTSVTK	9	Unmodified	_KTNLTSVTK_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;HTT|p.R1412H|1|0.18|ENSG00000197386|chr4:3174789-3174789|G/A|missense_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.29254150390625	2	496.292756	990.57096	-0.034708	-1.7225E-05	-0.38979	-0.00019345	-0.4245	-0.00021068	496.2923766276427	18.114	0.16806	18.114	18.005	18.173	0					6	3	2	0	0	0	0.14578	1	5512	5512		68.846	10.616	1	550120			22169	11216	14344	14401	22489	22489					0.07529725614722338
KTNLTSVTK	9	Unmodified	_KTNLTSVTK_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;HTT|p.R1412H|1|0.18|ENSG00000197386|chr4:3174789-3174789|G/A|missense_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.29248046875	2	496.292756	990.57096	-0.68034	-0.00033765	-0.09481	-4.7054E-05	-0.77515	-0.0003847	496.2928230361269	18.083	0.30952	18.083	17.978	18.288	0					8	6	2	0	0	0	0.090954	1	5355	5355		81.525	6.4817	1	935660			22170	11216	14344	14401	22490	22490					0.07529725614722338
KTNNFETDLLF	11	Unmodified	_KTNNFETDLLF_					0	0	0		tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.8948974609375	3	447.894354	1340.66123	0.85176	0.0003815	0.36194	0.00016211	1.2137	0.00054361	447.89448252461824	23.475	0.26454	23.475	23.369	23.634	0					10	5	3	0	0	0	0.67983	1	7981	7981		29.551	1.9068	1	876560			22171	22804	14345	14402	22491	22491					0.0045273015246038995
KTNPNSIKK	9	Unmodified	_KTNPNSIKK_					0	0	0		MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;ENST00000481292.1_1_10:13237140-13243699:+|nuORF	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.306640625	2	515.306198	1028.59784	1.196	0.00061631	-0.28371	-0.0001462	0.9123	0.00047012	515.3061605638437	12.541	0.14303	12.541	12.471	12.614	0					5	4	2	0	0	0	0.0097668	1	2656	2656		141.52	56.605	1	136370			22172	1369	14346	14403	22492	22492					0.08468834225891442
KTNPNSIKK	9	Unmodified	_KTNPNSIKK_					0	0	0		MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;ENST00000481292.1_1_10:13237140-13243699:+|nuORF	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3060913085938	2	515.306198	1028.59784	1.4068	0.00072491	-1.478	-0.0007616	-0.071211	-3.6695E-05	515.3055542119516	12.513	0.21554	12.513	12.427	12.642	0					7	5	2	0	0	0	0.063171	1	2844	2844		90.601	13.283	1	483650			22173	1369	14346	14403	22493	22493					0.08468834225891442
KTNPTHSATR	10	Unmodified	_KTNPTHSATR_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.7957763671875	2	556.793986	1111.57342	3.516	0.0019577	-0.51036	-0.00028417	3.0056	0.0016735	556.7937665851148	20.068	0.16495	20.068	20.011	20.176	0					6	3	2	0	0	0	0.44601	1	6326	6326		51.193	6.8155	1	605050			22174	3324	14347	14404	22494	22494					0.022095740723671042
KTNPTIGPAP	10	Unmodified	_KTNPTIGPAP_					0	0	0		ENSG00000196935|ENST00000355086|SRGAP1;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	ENSG00000196935|ENST00000355086|SRGAP1	ENSG00000196935|ENST00000355086|SRGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2776184082031	2	498.279649	994.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.508	1	19.508	19.008	20.008	0								0	0	0	0.41137	1	5058	5058		27.047	2.8446	1				22175	7404	14348	14405	22495	22495					0.04725456443236453
KTNPWVGKELL	11	Unmodified	_KTNPWVGKELL_					0	0	0			REV__ASB15|p.W524Lfs*15|1|0.12|ENSG00000146809|chr7:123630095-123630096|-/TGATAAAATTTAATTTAGTA|frameshift_variant	REV__ASB15|p.W524Lfs*15|1|0.12|ENSG00000146809|chr7:123630095-123630096|-/TGATAAAATTTAATTTAGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	643.3687744140625	2	642.869163	1283.72377	-2.3026	-0.0014803	-0.85718	-0.00055105	-3.1598	-0.0020313	642.8685768991994	24.442	0.30367	24.442	24.29	24.594	0					15	7	3	0	0	0	0.62791	1	7618	7618		19.263	0	1	142840	+		22176	12231	14349	14406	22496	22496					0.09325921011350147
KTNTLPSLPG	10	Unmodified	_KTNTLPSLPG_					0	0	0		ENST00000531006.1_1_8:144698125-144698617:-|nuORF	ENST00000531006.1_1_8:144698125-144698617:-|nuORF	ENST00000531006.1_1_8:144698125-144698617:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.19757080078125	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.531	1	41.531	41.031	42.031	0								0	0	0	0.41137	1	16526	16526		27.047	0.3544	1				22177	10433	14350	14407	22497	22497					0.058737256147196604
KTNVVDKK	8	Unmodified	_KTNVVDKK_					0	0	0			REV__ENSG00000163815|ENST00000296130|CLEC3B	REV__ENSG00000163815|ENST00000296130|CLEC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.77972412109375	2	466.282192	930.549831	-0.18008	-8.3967E-05	-0.60778	-0.0002834	-0.78786	-0.00036736	466.2823105431467	17.455	0.17632	17.455	17.316	17.493	0					11	5	3	0	0	0	0.61925	1	4319	4319		45.972	5.3996	1	316200	+		22178	15921	14351	14408	22498	22498					0.08177760305841275
KTPDVTPLVDK	11	Unmodified	_KTPDVTPLVDK_					0	0	0			REV__nc|ENSG00000151327|Q8N128|FAM177A1	REV__nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	606.8455200195312	2	606.845353	1211.67615	0.77093	0.00046784	-0.23783	-0.00014433	0.5331	0.00032351	606.845156538245	36.425	0.72929	36.425	36.019	36.748	0					49	21	3	0	0	0	0.60833	1	14161	14161		36.318	3.5671	1	467340	+		22179	15471	14352	14409	22499	22499					0.07878222020485737
KTPEPGAQQ	9	Unmodified	_KTPEPGAQQ_					0	0	0		ENSG00000175213|ENST00000311764|ZNF408	ENSG00000175213|ENST00000311764|ZNF408	ENSG00000175213|ENST00000311764|ZNF408	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.24566650390625	2	478.245806	954.47706	-0.43548	-0.00020826	0.45676	0.00021844	0.021285	1.0179E-05	478.2460625968735	13.633	0.49053	13.633	13.533	14.024	0					17	10	2	0	0	0	0.28504	1	3371	3371		51.528	0	1	159510			22180	6539	14353	14410	22500	22500					-0.001999934875584586
KTPINRNQ	8	Unmodified	_KTPINRNQ_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7748718261719	2	485.775065	969.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.643	1	13.643	13.143	14.143	0								0	0	0	1.7419	1	3367	3367		19.997	0	1				22181	4886	14354	14411	22501	22501					0.04959107877562019
KTPIQPRAE	9	Unmodified	_KTPIQPRAE_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.2008056640625	3	347.201341	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.871	1	26.871	26.371	27.371	0								0	0	0	0.32356	1	8498	8498		30.318	4.2543	1		+		22182	13518	14355	14412	22502	22502					0.064445477088384
KTPKLNEPI	9	Unmodified	_KTPKLNEPI_					0	0	0			REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.3108520507812	2	520.310949	1038.60735	0.26342	0.00013706	0.3816	0.00019855	0.64502	0.00033561	520.3109996564391	35.678	0.91825	35.678	35.557	36.476	0					125	44	5	0	0	0	0.27249	1	12178	12178		52.937	3.4007	1	11294000	+		22183	12676	14356	14413	22503	22503					0.08958602511415847
KTPLKPPLL	9	Unmodified	_KTPLKPPLL_					0	0	0		SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.2274169921875	3	336.226827	1005.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.87	1	31.87	31.37	32.37	0								0	0	0	0.40728	1	10266	10266		5.2201	0	1				22184	22485	14357	14414	22504	22504					0.15604971276127344
KTPPLATQEA	10	Unmodified	_KTPPLATQEA_					0	0	0		ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000254206|ENST00000698511|NPIPB11;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000169246|Q92617|NPIPB3;nc|ENSG00000169246|Q92617-6|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-5|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;ENSG00000169246|ENST00000542817|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3;ENSG00000255524|ENST00000683297|NPIPB8;ENSG00000234719|ENST00000399147|NPIPB2;ENSG00000198156|ENST00000695563|NPIPB6;ENSG00000196993|ENST00000357796|NPIPB9;ENSG00000196436|ENST00000692376|NPIPB15;ENSG00000233232|ENST00000452313|NPIPB7;ENST00000547442.5_1_18:11619510-11619729:-|nuORF	ENSG00000198064|ENST00000697092|NPIPB13	ENSG00000198064|ENST00000697092|NPIPB13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2916870117188	2	528.290214	1054.56587	0.69497	0.00036715	3.3584	0.0017742	4.0534	0.0021414	528.2917353958177	40.951	0.36899	40.951	40.762	41.131	0					11	6	2	0	0	0	0.62235	1	16265	16265		31.53	1.0262	1	111830			22185	7526	14358	14415	22505	22505					0.040774217520947786
KTPTTVVPL	9	Unmodified	_KTPTTVVPL_					0	0	0		ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.294677734375	2	478.294768	954.574983	0.65243	0.00031205	-0.74956	-0.00035851	-0.097132	-4.6458E-05	478.2942395542073	39.793	0.29461	39.793	39.703	39.998	0					26	10	3	0	0	0	0.11898	1	15645	15645		75.043	3.1658	1	888320			22186	4081	14359	14416	22506	22506					0.09587815108432096
KTQAISISK	9	Unmodified	_KTQAISISK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.29547119140625	2	488.295299	974.576045	1.281	0.00062551	-1.0968	-0.00053554	0.18425	8.997E-05	488.2947799538513	18.963	0.10729	18.963	18.917	19.025	0					7	3	3	0	0	0	0.026095	1	4817	4817		112.85	19.248	1	69575			22187	3672	14360	14417	22507	22507					0.087740294773198
KTQAISISK	9	Unmodified	_KTQAISISK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.29486083984375	2	488.295299	974.576045	-0.078205	-3.8187E-05	-0.66508	-0.00032476	-0.74329	-0.00036294	488.2950067450048	18.97	0.13463	18.97	18.907	19.042	0					7	4	2	0	0	0	0.079477	1	4828	4828		84.817	1.1703	1	358730			22188	3672	14360	14417	22508	22508					0.087740294773198
KTQAISISK	9	Unmodified	_KTQAISISK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.295166015625	2	488.295299	974.576045	0.40836	0.0001994	-0.83378	-0.00040713	-0.42542	-0.00020773	488.2949542741723	19.33	0.15795	19.33	19.231	19.389	0					8	3	3	0	0	0	0.0079272	1	5802	5802		145.46	27.65	1	721010			22189	3672	14360	14417	22509	22509					0.087740294773198
KTQAISISK	9	Unmodified	_KTQAISISK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2952880859375	2	488.295299	974.576045	0.74977	0.00036611	-0.70255	-0.00034305	0.047215	2.3055E-05	488.2950180024967	19.313	0.2768	19.313	19.215	19.492	0					12	6	2	0	0	0	0.01077	1	5797	5797		139.38	18.514	1	3027400			22190	3672	14360	14417	22510	22510					0.087740294773198
KTQAISISK	9	Unmodified	_KTQAISISK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2950744628906	2	488.295299	974.576045	-0.079183	-3.8665E-05	-0.56505	-0.00027591	-0.64424	-0.00031458	488.29497807339004	19.239	0.16523	19.239	19.132	19.297	0					11	3	4	0	0	0	0.0031197	1	6032	6032		167.93	36.317	1	2824800			22191	3672	14360	14417	22511	22511					0.087740294773198
KTQAISISK	9	Unmodified	_KTQAISISK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2956848144531	2	488.295299	974.576045	0.49964	0.00024397	-0.054271	-2.65E-05	0.44537	0.00021747	488.29526478163916	19.041	0.14542	19.041	18.992	19.138	0					7	3	3	0	0	0	0.01942	1	5099	5099		122.94	18.926	1	238990			22192	3672	14360	14417	22512	22512					0.087740294773198
KTQAISISK	9	Unmodified	_KTQAISISK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.29510498046875	2	488.295299	974.576045	-0.52213	-0.00025495	-0.054592	-2.6657E-05	-0.57672	-0.00028161	488.2953156053901	19.204	0.2139	19.204	19.096	19.309	0					11	4	3	0	0	0	0.0066803	1	5901	5901		150.81	24.568	1	4132800			22193	3672	14360	14417	22513	22513					0.087740294773198
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.3036499023438	2	559.303655	1116.59276	1.4303	0.0008	0.10381	5.8059E-05	1.5342	0.00085806	559.3040221112816	16.868	0.094357	16.868	16.801	16.896	0					8	4	3	0	0	0	0.17062	1	3917	3917		65.157	25.904	1	80352			22194	2535	14361	14418	22514	22514					0.03912530363277256
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3038940429688	2	559.303655	1116.59276	1.7982	0.0010057	-1.1714	-0.00065517	0.62678	0.00035056	559.3029602109051	17.187	0.25493	17.187	17.102	17.357	0					17	6	4	0	0	0	1.9006E-08	1	4800	4800		218.58	119.95	1	940130			22195	2535	14361	14418	22515	22515					0.03912530363277256
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.8070678710938	2	559.303655	1116.59276	0.12284	6.8707E-05	1.9403	0.0010852	2.0631	0.0011539	559.8064754726682	16.942	0.13229	16.942	16.869	17.001	0					9	5	2	0	0	0	0.18416	1	4156	4156		63.534	19.157	1	96423			22196	2535	14361	14418	22516	22516					0.03912530363277256
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.204833984375	3	373.204862	1116.59276	0.24997	9.329E-05	-0.54055	-0.00020174	-0.29058	-0.00010845	373.20465246805105	17.174	0.22088	17.174	17.064	17.285	0					7	4	2	0	0	0	0.037924	1	5040	5040		106.88	53.791	1	228200			22197	2535	14361	14418	22517	22517					0.03912530363277256
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.205078125	3	373.204862	1116.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.965	1	16.965	16.465	17.465	0								0	0	0	0.13425	1	4133	4133		79.489	38.062	1				22198	2535	14361	14418	22518	22518					0.03912530363277256
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.3051147460938	2	559.303655	1116.59276	1.0869	0.0006079	1.192	0.00066668	2.2789	0.0012746	559.3047158322339	16.94	0.12453	16.94	16.885	17.01	0					7	3	3	0	0	0	0.067603	1	4129	4129		89.029	17.151	1	101540			22199	2535	14361	14418	22519	22519					0.03912530363277256
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.204833984375	3	373.204862	1116.59276	-0.32255	-0.00012038	0.032136	1.1993E-05	-0.29041	-0.00010838	373.2049373636485	17.132	0.2709	17.132	17.039	17.31	0					14	5	4	0	0	0	0.063171	1	4881	4881		86.882	26.951	1	795750			22200	2535	14361	14418	22520	22520					0.03912530363277256
KTQEIFHSK	9	Unmodified	_KTQEIFHSK_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3040161132812	2	559.303655	1116.59276	1.826	0.0010213	-1.0578	-0.00059162	0.76823	0.00042967	559.3031020625177	17.133	0.22099	17.133	17.022	17.243	0					7	4	2	0	0	0	0.021035	1	4896	4896		120.27	56.065	1	1205100			22201	2535	14361	14418	22521	22521					0.03912530363277256
KTQFPQLK	8	Unmodified	_KTQFPQLK_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2929382324219	2	495.292559	988.570566	0.020171	9.9908E-06	-0.18173	-9.0009E-05	-0.16156	-8.0018E-05	495.2925439945888	20.639	0.18313	20.639	20.558	20.741	0					12	5	3	0	0	0	0.32815	1	5570	5570		79.451	0	1	217840			22202	1590	14362	14419	22522	22522					0.0758235068550448
KTQIGMTE	8	Oxidation (M)	_KTQIGM(Oxidation (M))TE_		KTQIGM(1)TE		KTQIGM(46)TE	0	0	1		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.22637939453125	2	462.228768	922.442982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.86	1	23.86	23.36	24.36	0								0	0	0	1.7419	1	7351	7351		45.952	7.1458	1				22203	1272	14363	14420	22523	22523		60			-0.021341579708291647
KTQKIVIKK	9	Unmodified	_KTQKIVIKK_					0	0	0		ENSG00000147654|ENST00000337573|EBAG9;nc|ENSG00000147654|O00559-2|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.5369567871094	3	362.585015	1084.73321	0.85018	0.00030826	-0.41614	-0.00015089	0.43404	0.00015737	362.5846844295183	15.141	0.10584	15.141	15.084	15.19	0					4	2	2	0	0	0	0.11411	1	3836	3836		76.17	0	1	63697			22204	4793	14364	14421	22524	22524					0.1942373408749063
KTQKIVIKK	9	Unmodified	_KTQKIVIKK_					0	0	0		ENSG00000147654|ENST00000337573|EBAG9;nc|ENSG00000147654|O00559-2|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.5850830078125	3	362.585015	1084.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.174	1	15.174	14.674	15.674	0								0	0	0	0.077333	1	4096	4096		78.264	21.83	1				22205	4793	14364	14421	22525	22525					0.1942373408749063
KTQKIVIKK	9	Unmodified	_KTQKIVIKK_					0	0	0		ENSG00000147654|ENST00000337573|EBAG9;nc|ENSG00000147654|O00559-2|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.5849304199219	3	362.585015	1084.73321	-0.069609	-2.5239E-05	-0.10032	-3.6375E-05	-0.16993	-6.1614E-05	362.5849967777845	15.07	0.2171	15.07	15.012	15.229	0					5	4	2	0	0	0	0.22823	1	3906	3906		58.246	6.7185	1	230950			22206	4793	14364	14421	22526	22526					0.1942373408749063
KTQKPFLQ	8	Unmodified	_KTQKPFLQ_					0	0	0		DCDC1|p.N526Mfs*10|1|0.2|ENSG00000170959|chr11:30905013-30905013|T/-|frameshift_variant;nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	DCDC1|p.N526Mfs*10|1|0.2|ENSG00000170959|chr11:30905013-30905013|T/-|frameshift_variant	DCDC1|p.N526Mfs*10|1|0.2|ENSG00000170959|chr11:30905013-30905013|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.26666259765625	2	495.292559	988.570566	-0.039908	-1.9766E-05	-0.20962	-0.00010382	-0.24953	-0.00012359	495.2925007306431	20.888	0.45879	20.888	20.781	21.24	0					14	9	3	0	0	0	0.27512	1	6828	6828		90.777	8.4716	1	2463600			22207	748	14365	14422	22527	22527					0.07582350685515848
KTQNFLIQK	9	Unmodified	_KTQNFLIQK_					0	0	0		BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant;ENSG00000142867|ENST00000648566|BCL10	BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant	BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.3305053710938	2	560.329673	1118.64479	0.12529	7.0206E-05	0.93639	0.00052469	1.0617	0.00059489	560.3302740993673	25.045	0.23083	25.045	24.937	25.168	0					14	7	3	0	0	0	0.017741	1	7726	7726		120.87	35.953	1	162110			22208	287	14366	14423	22528	22528					0.09021693777026485
KTQNFLIQK	9	Unmodified	_KTQNFLIQK_					0	0	0		BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant;ENSG00000142867|ENST00000648566|BCL10	BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant	BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.3295288085938	2	560.329673	1118.64479	1.0451	0.00058559	-0.78453	-0.0004396	0.26055	0.000146	560.3290837950789	25.09	0.18277	25.09	24.999	25.182	0					8	4	2	0	0	0	0.034688	1	7934	7934		98.582	24.327	1	127110			22209	287	14366	14423	22529	22529					0.09021693777026485
KTQNFLIQK	9	Unmodified	_KTQNFLIQK_					0	0	0		BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant;ENSG00000142867|ENST00000648566|BCL10	BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant	BCL10|p.S167Lfs*6|2|0.31|ENSG00000142867|chr1:85267830-85267830|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.3300170898438	2	560.329673	1118.64479	1.8201	0.0010199	-0.94922	-0.00053187	0.87091	0.000488	560.3290396395769	25.204	0.27034	25.204	25.093	25.364	0					14	5	4	0	0	0	0.014648	1	8807	8807		126.24	35.873	1	1408800			22210	287	14366	14423	22530	22530					0.09021693777026485
KTQNVFLTR	9	Unmodified	_KTQNVFLTR_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;NEK4|p.E836*|1|0.21|ENSG00000114904|chr3:52711797-52711798|-/A|frameshift_variant;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.818359375	2	553.819473	1105.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.957	1	24.957	24.457	25.457	0								0	0	0	0.21037	1	7702	7702		50.034	15.861	1				22211	2873	14367	14424	22531	22531					0.07580523117212579
KTQPVRNTE	9	Unmodified	_KTQPVRNTE_					0	0	0		LYN|p.E110Kfs*15|2|0.14|ENSG00000254087|chr8:55950495-55950495|A/-|frameshift_variant;ENSG00000254087|ENST00000519728|LYN	LYN|p.E110Kfs*15|2|0.14|ENSG00000254087|chr8:55950495-55950495|A/-|frameshift_variant	LYN|p.E110Kfs*15|2|0.14|ENSG00000254087|chr8:55950495-55950495|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7921142578125	2	536.790912	1071.56727	0.20546	0.00011029	1.6405	0.00088058	1.8459	0.00099087	536.791835929574	11.439	0.09604	11.439	11.397	11.493	0					11	4	3	0	0	0	0.58342	1	2200	2200		23.523	0.48021	1	475020			22212	8005	14368	14425	22532	22532					0.03435055840873247
KTQTIFLKY	9	Unmodified	_KTQTIFLKY_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.3346557617188	2	571.334424	1140.6543	-0.032294	-1.8451E-05	0.54455	0.00031112	0.51226	0.00029267	571.3346059433885	33.662	0.21138	33.662	33.486	33.698	0					11	5	3	0	0	0	0.10915	1	12473	12473		77.318	5.4401	1	255150			22213	11546	14369	14426	22533	22533					0.08959462062557577
KTRDRTCPVHE	11	Unmodified	_KTRDRTCPVHE_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENST00000473267.1_1_1:155721749-155721992:-|nuORF;ENST00000500626.2_1_1:155585459-155586181:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.8948059082031	3	447.894582	1340.66192	0.62534	0.00028009	-0.1626	-7.2828E-05	0.46274	0.00020726	447.89452511327966	23.504	0.26754	23.504	23.395	23.663	0					11	5	3	0	0	0	0.69004	1	8122	8122		28.577	0.93281	1	908200			22214	2988	14370	14427	22534	22534					0.0052124632054528774
KTRFYKFQ	8	Unmodified	_KTRFYKFQ_					0	0	0			REV__ENST00000380026.7_2_4:104037830-104041339:-|nuORF	REV__ENST00000380026.7_2_4:104037830-104041339:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3119506835938	2	559.311284	1116.60801	-0.1015	-5.6769E-05	0.58277	0.00032595	0.48128	0.00026918	559.3115557058519	22.245	1.5092	22.245	22.136	23.646	0					74	30	3	0	0	0	0.64144	1	7847	7847		42.396	1.618	1	7320200	+		22215	18766	14371	14428	22535	22535					0.054374419511077576
KTRGLGDF	8	Unmodified	_KTRGLGDF_					0	0	0			REV__ENSG00000100347|ENST00000350028|SAMM50	REV__ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2452392578125	2	447.245609	892.476666	0.12442	5.5647E-05	-0.2666	-0.00011923	-0.14218	-6.3588E-05	447.24552011993023	23.301	0.12487	23.301	23.221	23.346	0					5	3	2	0	0	0	0.5676	1	6736	6736		53.351	2.016	1	47523	+		22216	13546	14372	14429	22536	22536					0.02612631583235725
KTRICWKY	8	Unmodified	_KTRICWKY_					0	0	0		ENST00000535589.3_1_2:114648352-114674470:+|nuORF;ENST00000263238.6_1_2:114647705-114674470:+|nuORF;ENST00000415792.5_1_2:114647705-114688890:+|nuORF;ENST00000446821.5_1_2:114647705-114684940:+|nuORF	ENST00000535589.3_1_2:114648352-114674470:+|nuORF	ENST00000535589.3_1_2:114648352-114674470:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.3013305664062	2	549.299862	1096.58517	1.7711	0.00097284	0.96033	0.00052751	2.7314	0.0015004	549.3004394728717	19.546	0.19479	19.546	19.453	19.647	0					13	4	4	0	0	0	0.60719	1	5903	5903		47.916	0	1	1557800			22217	8316	14373	14430	22537	22537					0.04074099562012634
KTRIDPPLN	9	Unmodified	_KTRIDPPLN_					0	0	0			REV__ENST00000578430.1_1_17:56083680-56084618:-|nuORF	REV__ENST00000578430.1_1_17:56083680-56084618:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.3009643554688	2	527.306198	1052.59784	-1.1985	-0.00063197	-3.9548	-0.0020854	-5.1533	-0.0027174	527.3018795976633	19.351	0.096443	19.351	19.306	19.403	0					8	2	4	0	0	0	0.16002	1	5244	5244		66.429	4.3219	1	536370	+		22218	20434	14374	14431	22538	22538					0.07364834225904815
KTRITQMH	8	Oxidation (M)	_KTRITQM(Oxidation (M))H_		KTRITQM(1)H		KTRITQM(66)H	0	0	1		ENST00000537515.5_1_2:183583003-183584764:+|nuORF	ENST00000537515.5_1_2:183583003-183584764:+|nuORF	ENST00000537515.5_1_2:183583003-183584764:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7762451171875	2	515.776751	1029.53895	0.74995	0.0003868	-0.55522	-0.00028637	0.19473	0.00010044	515.7765163796488	15.456	0.071801	15.456	15.41	15.482	0					6	2	3	0	0	0	0.43813	1	3476	3476		66.429	11.653	1	53006			22219	10503	14375	14432	22539	22539		419			0.025360346599200057
KTRKTMMVQ	9	Oxidation (M)	_KTRKTM(Oxidation (M))MVQ_		KTRKTM(0.998)M(0.002)VQ		KTRKTM(28)M(-28)VQ	0	0	1			REV__ENST00000469448.1_1_X:118673692-118676584:-|nuORF	REV__ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.8092041015625	2	569.807193	1137.59983	3.4335	0.0019564	-0.19307	-0.00011002	3.2404	0.0018464	569.807252190691	21.962	0.1686	21.962	21.903	22.071	0					13	3	5	0	0	0	0.056004	1	7242	7242		93.143	10.393	2	3349200	+		22220	19454	14376	14433	22540	22540		714			0.036538036478305
KTRNARKV	8	Unmodified	_KTRNARKV_					0	0	0			REV__STRN3|p.N599Ifs*42|1|0.35|ENSG00000196792|chr14:30906969-30906969|T/-|frameshift_variant	REV__STRN3|p.N599Ifs*42|1|0.35|ENSG00000196792|chr14:30906969-30906969|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.8079833984375	2	486.8067	971.598846	-1.2422	-0.00060472	3.0855	0.001502	1.8433	0.00089733	486.8082578847873	20.56	0.11102	20.56	20.525	20.636	0					5	3	2	0	0	0	0.68432	1	5770	5770		35.618	2.8059	1	85092	+		22221	17288	14377	14434	22541	22541					0.11191093385457407
KTRRCGVGFA	10	Unmodified	_KTRRCGVGFA_					0	0	0			REV__ENST00000578861.5_1_17:46184933-46189448:+|nuORF	REV__ENST00000578861.5_1_17:46184933-46189448:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2990112304688	2	547.798017	1093.58148	1.811	0.00099207	-2.3653	-0.0012957	-0.55426	-0.00030362	547.7966928879729	40.955	0.33183	40.955	40.804	41.136	0					15	9	2	0	0	0	0.56931	1	16161	16161		37.812	1.3648	1	260730	+		22222	18545	14378	14435	22542	22542					0.038434297881622115
KTRRCIVI	8	Unmodified	_KTRRCIVI_					0	0	0			REV__ENST00000267068.5_2_13:33110836-33110986:-|nuORF	REV__ENST00000267068.5_2_13:33110836-33110986:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.8057556152344	2	494.807854	987.601155	-2.4733	-0.0012238	-2.1139	-0.001046	-4.5871	-0.0022698	494.8068026946123	28.449	0.2071	28.449	28.353	28.56	0					12	5	3	0	0	0	0.46905	1	9443	9443		63.306	0.32785	1	212740	+		22223	18084	14379	14436	22543	22543					0.10685805798891579
KTRRPRPH	8	Unmodified	_KTRRPRPH_					0	0	0			REV__nc|ENSG00000197503|Q96M19|LINC00477	REV__nc|ENSG00000197503|Q96M19|LINC00477	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.3195190429688	2	524.317766	1046.62098	1.443	0.00075659	1.0145	0.00053191	2.4575	0.0012885	524.3189459989966	34.769	0.096008	34.769	34.727	34.823	0					6	4	2	0	0	0	0.75323	1	11388	11388		24.203	5.0992	1	34321	+		22224	21178	14380	14437	22544	22544					0.09953317853887711
KTRSAAVRRST	11	Unmodified	_KTRSAAVRRST_					0	0	0			REV__ENSG00000187808|ENST00000343905|SOWAHD	REV__ENSG00000187808|ENST00000343905|SOWAHD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.8621215820312	2	616.862734	1231.71092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.823	1	10.823	10.323	11.323	0								0	0	0	0.3769	1	2096	2096		41.427	0	1		+		22225	17141	14381	14438	22545	22545					0.1043290267177781
KTRSCAGGLA	10	Unmodified	_KTRSCAGGLA_					0	0	0		ENST00000436575.5_1_7:6485721-6523688:-|nuORF	ENST00000436575.5_1_7:6485721-6523688:-|nuORF	ENST00000436575.5_1_7:6485721-6523688:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2558898925781	2	482.255651	962.496749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.297	1	17.297	16.797	17.797	0								0	0	0	0.28704	1	4099	4099		52.937	0	1				22226	9532	14382	14439	22546	22546					0.014000592515344579
KTRSCAGGLA	10	Unmodified	_KTRSCAGGLA_					0	0	0		ENST00000436575.5_1_7:6485721-6523688:-|nuORF	ENST00000436575.5_1_7:6485721-6523688:-|nuORF	ENST00000436575.5_1_7:6485721-6523688:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2556457519531	2	482.255651	962.496749	-0.10328	-4.9806E-05	0.61302	0.00029563	0.50974	0.00024583	482.25600054825924	17.559	0.16763	17.559	17.5	17.668	0					5	3	2	0	0	0	0.17315	1	5248	5248		82.75	20.643	1	339780			22227	9532	14382	14439	22547	22547					0.014000592515344579
KTRSTTSSM	9	Oxidation (M)	_KTRSTTSSM(Oxidation (M))_		KTRSTTSSM(1)		KTRSTTSSM(42)	0	0	1		ENST00000511526.5_1_3:128616515-128622914:+|nuORF	ENST00000511526.5_1_3:128616515-128622914:+|nuORF	ENST00000511526.5_1_3:128616515-128622914:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7484130859375	2	507.747856	1013.48116	1.1261	0.0005718	-0.44435	-0.00022562	0.68179	0.00034618	507.7476850828323	39.951	0.74021	39.951	39.539	40.279	0					58	26	3	0	0	0	0.39215	1	15657	15657		42.396	42.396	1	427790			22228	10236	14383	14440	22548	22548		406			-0.025042720561600618
KTRTLKKQ	8	Unmodified	_KTRTLKKQ_					0	0	0		ABL2|p.K836Nfs*34|2|0.23|ENSG00000143322|chr1:179108759-179108759|T/-|frameshift_variant;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	ABL2|p.K836Nfs*34|2|0.23|ENSG00000143322|chr1:179108759-179108759|T/-|frameshift_variant	ABL2|p.K836Nfs*34|2|0.23|ENSG00000143322|chr1:179108759-179108759|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8239440917969	2	501.824558	1001.63456	0.043938	2.2049E-05	0.41118	0.00020634	0.45512	0.00022839	501.8248670827492	11.914	2.102	11.914	11.804	13.906	0					93	50	5	0	0	0	0.65148	1	3222	3222		40.778	3.6191	1	17484000			22229	23	14384	14441	22549	22549					0.13381130842458333
KTRVEKIE	8	Unmodified	_KTRVEKIE_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.80035400390625	2	501.800749	1001.58694	-0.08886	-4.459E-05	0.10522	5.2797E-05	0.016355	8.207E-06	501.8007016768913	15.897	0.13756	15.897	15.841	15.979	0					7	3	3	0	0	0	0.71588	1	4226	4226		31.53	0	1	426630			22230	6311	14385	14442	22550	22550					0.08621431851611305
KTRVPTSVL	9	Unmodified	_KTRVPTSVL_					0	0	0			REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.81146240234375	2	500.811116	999.60768	-0.59605	-0.00029851	0.72797	0.00036457	0.13192	6.6066E-05	500.81159314087876	19.551	0.21201	19.551	19.447	19.659	0					10	4	3	0	0	0	0.30951	1	6209	6209		49.442	6.5773	1	548020	+		22231	15098	14386	14443	22551	22551					0.10786022231263814
KTSAHSQRAL	10	Unmodified	_KTSAHSQRAL_					0	0	0		nc|ENSG00000155719|Q7RTW8-4|OTOA;ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA	nc|ENSG00000155719|Q7RTW8-4|OTOA	nc|ENSG00000155719|Q7RTW8-4|OTOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8047485351562	2	549.804354	1097.59415	0.53243	0.00029273	0.14228	7.8224E-05	0.67471	0.00037096	549.8043411509908	24.938	0.20461	24.938	24.814	25.019	0					14	5	4	0	0	0	0.41384	1	8449	8449		54.722	22.767	1	859740			22232	5136	14387	14444	22552	22552					0.04926164452035664
KTSEAKKK	8	Unmodified	_KTSEAKKK_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2819519042969	2	460.282192	918.549831	-0.81183	-0.00037367	0.33828	0.0001557	-0.47355	-0.00021797	460.2822970873105	12.133	0.13429	12.133	12.046	12.18	0					8	3	3	0	0	0	0.2678	1	2661	2661		93.195	10.955	1	726110			22233	11866	14388	14445	22553	22553					0.08729760305845957
KTSGRRSLRL	10	Unmodified	_KTSGRRSLRL_					0	0	0		ENST00000485396.5_1_3:137963948-137982602:+|nuORF	ENST00000485396.5_1_3:137963948-137982602:+|nuORF	ENST00000485396.5_1_3:137963948-137982602:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.3638916015625	2	587.36237	1172.71019	3.1951	0.0018767	-0.57769	-0.00033931	2.6174	0.0015374	587.362097819016	20.469	0.165	20.469	20.41	20.575	0					8	3	3	0	0	0	0.39647	1	6518	6518		62.107	7.3851	1	1700400			22234	10007	14389	14446	22554	22554					0.13074108022738073
KTSGRVLQ	8	Unmodified	_KTSGRVLQ_					0	0	0			REV__nc|ENSG00000121417|Q13398-3|ZNF211	REV__nc|ENSG00000121417|Q13398-3|ZNF211	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7668762207031	2	444.766709	887.518865	-0.048768	-2.1691E-05	0.41743	0.00018566	0.36867	0.00016397	444.76690984886267	16.217	0.107	16.217	16.118	16.225	0					4	2	2	0	0	0	0.29286	1	4341	4341		84.916	9.8722	1	154950	+		22235	20999	14390	14447	22555	22555					0.07060606991615259
KTSGSNVKIVK	11	Unmodified	_KTSGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.5712585449219	3	387.571434	1159.69247	0.85996	0.0003333	-2.2335	-0.00086564	-1.3735	-0.00053234	387.57038628586804	15.882	0.13383	15.882	15.775	15.909	0					8	3	3	0	0	0	0.035657	1	4175	4175		128.51	0	1	243800			22236	3351	14391	14448	22556	22556					0.1190134797718656
KTSGSNVKIVK	11	Unmodified	_KTSGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.8546142578125	2	580.853512	1159.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.622	1	15.622	15.122	16.122	0								0	0	0	0.24969	1	3599	3599		58.246	0	1				22237	3351	14391	14448	22557	22557					0.1190134797718656
KTSGSNVKIVK	11	Unmodified	_KTSGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.8534545898438	2	580.853512	1159.69247	1.5161	0.00088062	-2.3635	-0.0013729	-0.84744	-0.00049224	580.8517107708465	15.826	0.11138	15.826	15.769	15.88	0					4	2	2	0	0	0	0.0091991	1	4414	4414		125.71	0	1	623650			22238	3351	14391	14448	22558	22558					0.1190134797718656
KTSKSAVKK	9	Unmodified	_KTSKSAVKK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.8110046386719	2	488.811116	975.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.5	1	10.5	10	11	0								0	0	0	0.2882	1	2011	2011		37.508	3.9926	1				22239	5871	14392	14449	22559	22559					0.11890022231273178
KTSKVAPGT	9	Unmodified	_KTSKVAPGT_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.76123046875	2	444.761092	887.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.467	1	13.467	12.967	13.967	0								0	0	0	0.27939	1	3132	3132		39.253	3.6345	1				22240	5562	14393	14450	22560	22560					0.059377848974691005
KTSLENIW	8	Unmodified	_KTSLENIW_					0	0	0		nc|ENSG00000185985|Q9H156-2|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7655029296875	2	495.766374	989.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.746	1	15.746	15.246	16.246	0								0	0	0	1.7419	1	3648	3648		21.96	0	1				22241	11687	14394	14451	22561	22561					0.023017675518872238
KTSLLPNNILQ	11	Unmodified	_KTSLLPNNILQ_					0	0	0			REV__ENST00000555168.1_1_X:119270955-119378696:-|nuORF	REV__ENST00000555168.1_1_X:119270955-119378696:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	620.8672485351562	2	620.86662	1239.71869	0.3638	0.00022587	1.0127	0.00062877	1.3765	0.00085464	620.8670609295453	27.21	0.21579	27.21	27.09	27.306	0					9	5	2	0	0	0	0.55773	1	8866	8866		30.569	0	1	93251	+		22242	20241	14395	14452	22562	22562					0.10841617148707883
KTSNGSLGV	9	Unmodified	_KTSNGSLGV_					0	0	0		ENST00000418978.5_1_16:258158-278359:-|nuORF	ENST00000418978.5_1_16:258158-278359:-|nuORF	ENST00000418978.5_1_16:258158-278359:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.7346496582031	2	431.735074	861.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.069	1	16.069	15.569	16.569	0								0	0	0	0.3119	1	4521	4521		32.812	1.2826	1				22243	9383	14396	14453	22563	22563					0.01932621483706498
KTSNLENVKF	10	Unmodified	_KTSNLENVKF_					0	0	0		ENST00000467390.5_1_2:138722061-138759907:+|nuORF;HNMT|p.Q192Pfs*3|1|0.33|ENSG00000150540|chr2:138013821-138013822|-/C|frameshift_variant;ENSG00000150540|ENST00000280097|HNMT	ENST00000467390.5_1_2:138722061-138759907:+|nuORF	ENST00000467390.5_1_2:138722061-138759907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.8230590820312	2	590.322045	1178.62954	-0.46985	-0.00027737	1.6175	0.00095483	1.1476	0.00067747	590.3229542961961	39.985	0.096817	39.985	39.933	40.029	0					10	5	2	0	0	0	0.68774	1	13409	13409		23.523	0.94304	1	56418			22244	4927	14397	14454	22564	22564					0.04736782189161204
KTSNLLLSH	9	Unmodified	_KTSNLLLSH_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;nc|ENSG00000008128|Q9UQ88-9|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.79278564453125	2	506.792924	1011.57129	0.81302	0.00041203	-0.75043	-0.00038031	0.062585	3.1718E-05	506.79255426609836	24.687	0.15135	24.687	24.616	24.768	0					6	4	2	0	0	0	0.19952	1	7334	7334		61.691	12.25	1	70095			22245	1014	14398	14455	22565	22565					0.06597145334569632
KTSNLLLSH	9	Unmodified	_KTSNLLLSH_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;nc|ENSG00000008128|Q9UQ88-9|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7929382324219	2	506.792924	1011.57129	0.85246	0.00043202	-0.68139	-0.00034532	0.17107	8.6697E-05	506.7926457702048	25.022	0.22256	25.022	24.941	25.164	0					11	5	3	0	0	0	0.02429	1	8505	8505		114.89	16.265	1	525960			22246	1014	14398	14455	22566	22566					0.06597145334569632
KTSNLLLSH	9	Unmodified	_KTSNLLLSH_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;nc|ENSG00000008128|Q9UQ88-9|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7923889160156	2	506.792924	1011.57129	0.097066	4.9192E-05	-0.0080857	-4.0978E-06	0.08898	4.5094E-05	506.79243865148123	24.819	0.14646	24.819	24.729	24.876	0					5	3	2	0	0	0	0.12834	1	7813	7813		72.879	14.097	1	62028			22247	1014	14398	14455	22567	22567					0.06597145334569632
KTSNLLLSH	9	Unmodified	_KTSNLLLSH_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;nc|ENSG00000008128|Q9UQ88-9|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7929382324219	2	506.792924	1011.57129	-0.20663	-0.00010472	0.14081	7.1364E-05	-0.065817	-3.3356E-05	506.79296330186304	24.921	0.25518	24.921	24.821	25.076	0					8	5	3	0	0	0	0.076532	1	8674	8674		85.862	9.0152	1	402040			22248	1014	14398	14455	22568	22568					0.06597145334569632
KTSPHVSSLQS	11	Unmodified	_KTSPHVSSLQS_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.8121337890625	2	585.809302	1169.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.348	1	34.348	33.848	34.848	0								0	0	0	0.40356	1	13232	13232		36.318	2.396	1		+		22249	15442	14399	14456	22569	22569					0.026033076667545174
KTSRCGLWA	9	Unmodified	_KTSRCGLWA_					0	0	0		USP6|p.H470Ifs*36|1|0.24|ENSG00000129204|chr17:5139580-5139580|C/-|frameshift_variant;USP6|p.G465Afs*41|1|0.33|ENSG00000129204|chr17:5139566-5139566|G/-|frameshift_variant;nc|ENSG00000129204|P35125-3|USP6;USP6|p.L931Pfs*6|1|0.06|ENSG00000129204|chr17:5155567-5155568|CA/-|frameshift_variant;USP6|p.E983Gfs*34|1|0.12|ENSG00000129204|chr17:5162911-5162912|-/G|frameshift_variant;USP6|p.R1206Gfs*38|1|0.11|ENSG00000129204|chr17:5170574-5170574|G/-|frameshift_variant;ENSG00000129204|ENST00000574788|USP6	USP6|p.H470Ifs*36|1|0.24|ENSG00000129204|chr17:5139580-5139580|C/-|frameshift_variant	USP6|p.H470Ifs*36|1|0.24|ENSG00000129204|chr17:5139580-5139580|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2646179199219	2	511.266019	1020.51748	-0.0030794	-1.5744E-06	-4.1928	-0.0021437	-4.1959	-0.0021452	511.26418806787575	11.72	0.11411	11.72	11.677	11.791	0					8	4	2	0	0	0	0.53083	1	2315	2315		29.15	0	1	69132			22250	3583	14400	14457	22570	22570					0.008046496311862938
KTSRRRGGA	9	Unmodified	_KTSRRRGGA_					0	0	0			REV__ENST00000519591.5_1_8:144413480-144414663:-|nuORF	REV__ENST00000519591.5_1_8:144413480-144414663:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.79296875	2	494.791581	987.568609	2.8171	0.0013939	-0.30798	-0.00015239	2.5091	0.0012415	494.79154241150155	16.225	0.21898	16.225	16.114	16.333	0					8	4	3	0	0	0	0.047855	1	4436	4436		101.6	101.6	1	1419400	+		22251	19938	14401	14458	22571	22571					0.07432734720282497
KTSSAFVGK	9	Unmodified	_KTSSAFVGK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7613830566406	2	462.761092	923.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.856	1	16.856	16.356	17.356	0								0	0	0	0.00067705	1	4652	4652		129.42	52.575	1				22252	6444	14402	14459	22572	22572					0.04281784897477792
KTSSAFVGK	9	Unmodified	_KTSSAFVGK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.76104736328125	2	462.761092	923.507631	0.67684	0.00031321	-1.0878	-0.00050339	-0.41096	-0.00019018	462.76062523676745	16.862	0.24902	16.862	16.78	17.029	0					15	6	3	0	0	0	0.022525	1	4648	4648		117.81	49.024	1	1726500			22253	6444	14402	14459	22573	22573					0.04281784897477792
KTSSAFVGK	9	Unmodified	_KTSSAFVGK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7607421875	2	462.761092	923.507631	-0.14549	-6.7328E-05	-0.48066	-0.00022243	-0.62615	-0.00028976	462.76080387100774	16.826	0.40029	16.826	16.68	17.081	0					16	8	4	0	0	0	0.0047071	1	4873	4873		159.28	68.499	1	1393000			22254	6444	14402	14459	22574	22574					0.04281784897477792
KTSSAFVGK	9	Unmodified	_KTSSAFVGK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7613220214844	2	462.761092	923.507631	-0.13868	-6.4177E-05	0.51202	0.00023694	0.37334	0.00017277	462.7614374462294	16.615	0.17667	16.615	16.527	16.703	0					8	5	3	0	0	0	0.047855	1	3988	3988		96.034	30.23	1	172950			22255	6444	14402	14459	22575	22575					0.04281784897477792
KTSSAFVGK	9	Unmodified	_KTSSAFVGK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7608947753906	2	462.761092	923.507631	-0.47193	-0.00021839	-0.13227	-6.1209E-05	-0.6042	-0.0002796	462.7609806666939	16.804	0.25943	16.804	16.697	16.957	0					12	5	3	0	0	0	0.015496	1	4716	4716		129.42	52.104	1	3013800			22256	6444	14402	14459	22576	22576					0.04281784897477792
KTSSGFLAK	9	Unmodified	_KTSSGFLAK_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.76861572265625	2	469.768917	937.523281	0.20615	9.6843E-05	-0.68304	-0.00032087	-0.47689	-0.00022403	469.7685312011874	19.624	0.31274	19.624	19.522	19.835	0					9	7	2	0	0	0	0.082776	1	5969	5969		83.647	19.44	1	636950			22257	1187	14403	14460	22577	22577					0.05202071414510101
KTSSGFLAK	9	Unmodified	_KTSSGFLAK_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7685852050781	2	469.768917	937.523281	-0.52996	-0.00024896	-0.76801	-0.00036079	-1.298	-0.00060975	469.76900126747205	19.549	0.26445	19.549	19.442	19.706	0					7	5	2	0	0	0	0.28504	1	6074	6074		51.528	0.33506	1	681290			22258	1187	14403	14460	22578	22578					0.05202071414510101
KTSTKVKQ	8	Unmodified	_KTSTKVKQ_					0	0	0			REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2828369140625	2	460.282192	918.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.405	1	12.405	11.905	12.905	0								0	0	0	1.7419	1	2604	2604		63.306	4.5243	1		+		22259	14722	14404	14461	22579	22579					0.08729760305845957
KTSTQRLLP	9	Unmodified	_KTSTQRLLP_					0	0	0			REV__nc|ENSG00000196482|P62508-4|ESRRG	REV__nc|ENSG00000196482|P62508-4|ESRRG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.3140258789062	2	522.314023	1042.61349	0.40695	0.00021256	-0.072111	-3.7664E-05	0.33484	0.00017489	522.3141312513371	13.291	0.1133	13.291	13.202	13.316	0					9	5	2	0	0	0	0.13726	1	2732	2732		54.776	1.8396	1	46802	+		22260	17259	14405	14462	22580	22580					0.0938912074293512
KTSTTRLGSF	10	Unmodified	_KTSTTRLGSF_					0	0	0			REV__nc|ENSG00000168077|Q6AZY7-2|SCARA3	REV__nc|ENSG00000168077|Q6AZY7-2|SCARA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.3021240234375	2	549.301113	1096.58767	2.9239	0.0016061	-0.40504	-0.00022249	2.5189	0.0013836	549.3009846285133	19.208	0.099569	19.208	19.146	19.245	0					9	3	3	0	0	0	0.44292	1	4920	4920		56.721	8.8055	1	260460	+		22261	16239	14406	14463	22581	22581					0.04324226500671102
KTSTVFSSK	9	Unmodified	_KTSTVFSSK_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7713623046875	2	492.771657	983.528761	-0.15595	-7.6846E-05	0.060249	2.9689E-05	-0.095698	-4.7157E-05	492.77169113050917	17.63	0.18288	17.63	17.558	17.741	0					11	5	3	0	0	0	0.090954	1	4238	4238		81.525	21.407	1	327360			22262	11706	14407	14464	22582	22582					0.03633750206336117
KTSTVFSSK	9	Unmodified	_KTSTVFSSK_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7714538574219	2	492.771657	983.528761	0.78462	0.00038664	-1.1839	-0.00058341	-0.39932	-0.00019677	492.7710757400898	17.951	0.20079	17.951	17.896	18.097	0					9	4	3	0	0	0	0.0066803	1	5170	5170		150.81	71.098	1	2134200			22263	11706	14407	14464	22583	22583					0.03633750206336117
KTSTVFSSK	9	Unmodified	_KTSTVFSSK_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.771484375	2	492.771657	983.528761	-0.054651	-2.6931E-05	-0.36126	-0.00017802	-0.41591	-0.00020495	492.7714683841131	17.913	0.26874	17.913	17.853	18.122	0					10	5	3	0	0	0	0.013298	1	5414	5414		133.99	58.95	1	1242900			22264	11706	14407	14464	22584	22584					0.03633750206336117
KTSTVFSSK	9	Unmodified	_KTSTVFSSK_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7713623046875	2	492.771657	983.528761	0.38548	0.00018995	-0.92912	-0.00045784	-0.54364	-0.00026789	492.77112285053806	17.715	0.11292	17.715	17.655	17.768	0					4	2	2	0	0	0	0.31937	1	4484	4484		48.602	12.983	1	228210			22265	11706	14407	14464	22585	22585					0.03633750206336117
KTSTVFSSK	9	Unmodified	_KTSTVFSSK_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.77130126953125	2	492.771657	983.528761	-0.59913	-0.00029523	0.51806	0.00025528	-0.081072	-3.995E-05	492.7717493556799	17.939	0.50383	17.939	17.784	18.288	0					18	10	3	0	0	0	0.037098	1	5259	5259		102.06	45.628	1	2058000			22266	11706	14407	14464	22586	22586					0.03633750206336117
KTSTVFSSK	9	Unmodified	_KTSTVFSSK_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7714538574219	2	492.771657	983.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.948	1	17.948	17.448	18.448	0								0	0	0	0.0029749	1	5275	5275		150.81	60.209	1				22267	11706	14407	14464	22587	22587					0.03633750206336117
KTSTVPPSLRK	11	Unmodified	_KTSTVPPSLRK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.5813293457031	3	405.24695	1212.71902	0.14619	5.9243E-05	-0.43272	-0.00017536	-0.28653	-0.00011612	405.2467325846654	17.62	0.12858	17.62	17.544	17.672	0					9	3	3	0	0	0	0.59078	1	4420	4420		37.6	1.2823	1	145350			22268	7794	14408	14465	22588	22588					0.12117036868517062
KTSTVPPSLRK	11	Unmodified	_KTSTVPPSLRK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	607.3670043945312	2	607.366787	1212.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.612	1	17.612	17.112	18.112	0								0	0	0	0.29368	1	4426	4426		43.651	0	1				22269	7794	14408	14465	22589	22589					0.12117036868517062
KTSTVPPSLRK	11	Unmodified	_KTSTVPPSLRK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.2467041015625	3	405.24695	1212.71902	-0.57355	-0.00023243	0.27717	0.00011232	-0.29637	-0.0001201	405.2470356160276	17.792	1.0529	17.792	17.683	18.736	0					37	21	3	0	0	0	0.20322	2	5210	5210;5505		73.9	23.867	1	1602900			22270	7794	14408	14465	22590;22591	22590					0.12117036868517062
KTSTVPPSLRK	11	Unmodified	_KTSTVPPSLRK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.24676513671875	3	405.24695	1212.71902	0.64171	0.00026005	-0.85924	-0.0003482	-0.21752	-8.8151E-05	405.2464913128297	17.776	0.45781	17.776	17.717	18.175	0					25	9	3	0	0	0	0.18934	1	5204	5204		75.566	32.147	1	753440			22271	7794	14408	14465	22592	22592					0.12117036868517062
KTSVFQALA	9	Unmodified	_KTSVFQALA_					0	0	0		ENST00000492333.5_1_3:45879526-45957062:-|nuORF	ENST00000492333.5_1_3:45879526-45957062:-|nuORF	ENST00000492333.5_1_3:45879526-45957062:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.77691650390625	2	482.776742	963.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.873	1	37.873	37.373	38.373	0								0	0	0	0.23445	1	14838	14838		45.972	0	1				22272	10080	14409	14466	22593	22593					0.05570357931549097
KTTAKELQK	9	Unmodified	_KTTAKELQK_					0	0	0			REV__tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	REV__tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.8139038085938	2	523.813856	1045.61316	1.464	0.00076686	-0.89415	-0.00046837	0.56985	0.00029849	523.8133526359198	19.302	0.19097	19.302	19.222	19.413	0					15	5	4	0	0	0	0.0073253	1	4962	4962		148.04	0	1	1649400	+		22273	21790	14410	14467	22594	22594					0.0921770102308983
KTTAKELQK	9	Unmodified	_KTTAKELQK_					0	0	0			REV__tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	REV__tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.8141479492188	2	523.813856	1045.61316	1.6259	0.00085168	-1.6319	-0.00085482	-0.0059898	-3.1376E-06	523.8128086312271	19.533	0.36589	19.533	19.425	19.791	0					21	7	5	0	0	0	0.014688	1	6047	6047		131.03	0	1	12078000	+		22274	21790	14410	14467	22595	22595					0.0921770102308983
KTTFRLAN	8	Unmodified	_KTTFRLAN_					0	0	0			REV__ENSG00000197872|ENST00000381323|CYRIA	REV__ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.77435302734375	2	475.774534	949.534515	-0.11925	-5.6735E-05	-0.56576	-0.00026918	-0.68501	-0.00032591	475.7742338629114	22.308	0.21366	22.308	22.22	22.434	0					11	4	4	0	0	0	0.43813	1	7530	7530		66.429	7.6473	1	392980	+		22275	17361	14411	14468	22596	22596					0.057728935086515776
KTTGLIETQ	9	Unmodified	_KTTGLIETQ_					0	0	0		GNAT3|p.I184L|1|0.44|ENSG00000214415|chr7:80474291-80474291|T/G|missense_variant	GNAT3|p.I184L|1|0.44|ENSG00000214415|chr7:80474291-80474291|T/G|missense_variant	GNAT3|p.I184L|1|0.44|ENSG00000214415|chr7:80474291-80474291|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7786560058594	2	495.776939	989.539325	-1.2148	-0.00060228	1.2694	0.00062933	0.054554	2.7046E-05	495.7774198353211	17.408	0.1125	17.408	17.336	17.448	0					10	4	3	0	0	0	0.078509	1	4347	4347		85.161	0	1	299780			22276	11159	14412	14469	22597	22597					0.04413732860757591
KTTGSAYTYS	10	Unmodified	_KTTGSAYTYS_					0	0	0		ENSG00000013293|ENST00000231706|SLC7A14	ENSG00000013293|ENST00000231706|SLC7A14	ENSG00000013293|ENST00000231706|SLC7A14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7569580078125	2	539.756204	1077.49785	-0.085986	-4.6411E-05	1.1427	0.00061679	1.0567	0.00057038	539.7567687986653	21.061	0.20345	21.061	20.953	21.157	0					15	6	3	0	0	0	0.6796	1	5963	5963		24.519	0.31644	1	560290			22277	1062	14413	14470	22598	22598					-0.0377944789859157
KTTGTMIHK	9	Unmodified	_KTTGTMIHK_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7814025878906	2	508.781502	1015.54845	0.91687	0.00046649	-1.3915	-0.00070797	-0.47463	-0.00024148	508.78093417480653	14.826	0.097659	14.826	14.777	14.875	0					6	2	3	0	0	0	0.01873	1	3710	3710		124.08	30.885	1	493510			22278	2182	14414	14471	22599	22599					0.04129802945442407
KTTGTMIHK	9	Unmodified	_KTTGTMIHK_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.78143310546875	2	508.781502	1015.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.776	1	14.776	14.276	15.276	0								0	0	0	0.018912	1	3752	3752		101.25	18.948	1				22279	2182	14414	14471	22600	22600					0.04129802945442407
KTTHPLIQH	9	Unmodified	_KTTHPLIQH_					0	0	0		KIF24|p.P662Afs*10|1|0.31|ENSG00000186638|chr9:34257624-34257625|-/T|frameshift_variant;KIF24|p.K661Sfs*34|1|0.74|ENSG00000186638|chr9:34257625-34257625|T/-|frameshift_variant;KIF24|p.G740Rfs*43|1|0.1|ENSG00000186638|chr9:34257390-34257391|-/TT|frameshift_variant;nc|ENSG00000186638|Q5T7B8-4|KIF24;ENSG00000186638|ENST00000402558|KIF24	KIF24|p.P662Afs*10|1|0.31|ENSG00000186638|chr9:34257624-34257625|-/T|frameshift_variant	KIF24|p.P662Afs*10|1|0.31|ENSG00000186638|chr9:34257624-34257625|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.806640625	2	537.806365	1073.59818	1.8991	0.0010214	-0.92356	-0.00049669	0.97555	0.00052466	537.8056914225675	19.19	0.15596	19.19	19.138	19.294	0					5	3	2	0	0	0	0.19952	1	5758	5758		64.207	2.0999	1	183060			22280	7153	14415	14472	22601	22601					0.0643225394574074
KTTKKSLYK	9	Unmodified	_KTTKKSLYK_					0	0	0			REV__ENSG00000163527|ENST00000295770|STT3B	REV__ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.22894287109375	3	366.229008	1095.66519	1.0016	0.0003668	-1.0419	-0.00038158	-0.040365	-1.4783E-05	366.2286256140269	28.077	0.36781	28.077	27.943	28.311	0					11	7	3	0	0	0	0.36892	1	10153	10153		44.377	15.8	1	425940	+		22281	15890	14416	14473	22602	22602					0.12118864436843069
KTTKLQLSK	9	Unmodified	_KTTKLQLSK_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.8321533203125	2	523.832049	1045.64954	1.7595	0.00092169	-1.3203	-0.00069161	0.43922	0.00023008	523.8312862256201	17.188	0.089895	17.188	17.145	17.235	0					6	2	3	0	0	0	0.18282	1	4815	4815		56.632	0.19845	1	281290			22282	1433	14417	14474	22603	22603					0.12854577919802068
KTTKNQPMQ	9	Unmodified	_KTTKNQPMQ_					0	0	0			REV__IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	REV__IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2830200195312	2	538.281866	1074.54918	2.0462	0.0011014	-1.5681	-0.00084408	0.47806	0.00025733	538.2813719046069	13.762	0.61024	13.762	13.585	14.196	0					34	15	3	0	0	0	0.0792	1	3173	3173		84.916	2.675	1	663430	+		22283	16957	14418	14475	22604	22604					0.014885975944935126
KTTKQAAFL	9	Unmodified	_KTTKQAAFL_					0	0	0			REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.29705810546875	2	504.297842	1006.58113	-0.83511	-0.00042115	-2.2429	-0.0011311	-3.078	-0.0015522	504.2963797010977	21.866	1.4149	21.866	21.386	22.801	0					65	44	2	0	0	0	0.37197	1	6182	6182		44.117	8.4985	1	156310	+		22284	22011	14419	14476	22605	22605					0.0781033333993264
KTTKQAAFL	9	Unmodified	_KTTKQAAFL_					0	0	0			REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53460693359375	3	336.53432	1006.58113	1.4875	0.0005006	-1.1926	-0.00040133	0.29496	9.9265E-05	336.5338957336989	47.698	0.42836	47.698	47.527	47.956	0					31	25	2	0	0	0	0.41113	1	18219	18219		32.751	0	1	76674	+		22285	22011	14419	14476	22606	22606					0.0781033333993264
KTTKQAAFL	9	Unmodified	_KTTKQAAFL_					0	0	0			REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342102050781	3	336.53432	1006.58113	1.4875	0.00050059	-1.5366	-0.00051712	-0.049122	-1.6531E-05	336.5338660158685	50.822	0.32794	50.822	50.703	51.031	0					32	20	2	0	0	0	0.57706	1	18972	18972		18.262	2.6203	1	55801	+		22286	22011	14419	14476	22607	22607					0.0781033333993264
KTTKQAAFL	9	Unmodified	_KTTKQAAFL_					0	0	0			REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5345153808594	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.17	1	46.17	45.67	46.67	0								0	0	0	0.3368	1	17779	17779		21.686	0	1		+		22287	22011	14419	14476	22608	22608					0.0781033333993264
KTTKQAAFL	9	Unmodified	_KTTKQAAFL_					0	0	0			REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2979431152344	2	504.297842	1006.58113	0.12024	6.0636E-05	0.67147	0.00033862	0.79171	0.00039926	504.29814123753306	23.951	1.5687	23.951	22.911	24.48	0					51	37	2	0	0	0	0.47038	1	7036	7036		35.618	2.8059	1	127490	+		22288	22011	14419	14476	22609	22609					0.0781033333993264
KTTKQAAFL	9	Unmodified	_KTTKQAAFL_					0	0	0			REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.774	1	32.774	32.274	33.274	0								0	0	0	0.3368	1	12387	12387		21.686	0	1		+		22289	22011	14419	14476	22610	22610					0.0781033333993264
KTTQDVKK	8	Unmodified	_KTTQDVKK_					0	0	0		ENST00000517487.5_1_8:95906073-95906449:-|nuORF;CCNE2|p.R42Efs*38|1|0.07|ENSG00000175305|chr8:94893932-94893932|T/-|frameshift_variant;nc|ENSG00000175305|O96020-2|CCNE2;ENSG00000175305|ENST00000308108|CCNE2	ENST00000517487.5_1_8:95906073-95906449:-|nuORF	ENST00000517487.5_1_8:95906073-95906449:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.27911376953125	2	474.279649	946.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.63	1	11.63	11.13	12.13	0								0	0	0	1.7419	1	2184	2184		107.01	10.342	1				22290	417	14420	14477	22611	22611					0.06933456443232444
KTTQDVKK	8	Unmodified	_KTTQDVKK_					0	0	0		ENST00000517487.5_1_8:95906073-95906449:-|nuORF;CCNE2|p.R42Efs*38|1|0.07|ENSG00000175305|chr8:94893932-94893932|T/-|frameshift_variant;nc|ENSG00000175305|O96020-2|CCNE2;ENSG00000175305|ENST00000308108|CCNE2	ENST00000517487.5_1_8:95906073-95906449:-|nuORF	ENST00000517487.5_1_8:95906073-95906449:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.27935791015625	2	474.279649	946.544745	0.69788	0.00033099	-1.4851	-0.00070436	-0.78723	-0.00037337	474.27903366938347	11.893	3.6471	11.893	11.767	15.414	0					202	83	5	0	0	0	0.22872	3	2525	2525;3083;3259		124.08	14.641	1	247480000			22291	417	14420	14477	22612;22613;22614	22612					0.06933456443232444
KTTQDVKK	8	Unmodified	_KTTQDVKK_					0	0	0		ENST00000517487.5_1_8:95906073-95906449:-|nuORF;CCNE2|p.R42Efs*38|1|0.07|ENSG00000175305|chr8:94893932-94893932|T/-|frameshift_variant;nc|ENSG00000175305|O96020-2|CCNE2;ENSG00000175305|ENST00000308108|CCNE2	ENST00000517487.5_1_8:95906073-95906449:-|nuORF	ENST00000517487.5_1_8:95906073-95906449:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2797546386719	2	474.279649	946.544745	2.36	0.0011193	-2.5528	-0.0012107	-0.19278	-9.1433E-05	474.27881268743926	11.916	2.5814	11.916	11.76	14.341	0					176	62	6	0	0	0	0.42778	2	3532	3058;3532		67.494	3.9598	1	259270000			22292	417	14420	14477	22615;22616	22616					0.06933456443232444
KTTQQRES	8	Unmodified	_KTTQQRES_					0	0	0		NUAK1|p.K470T|1|0.31|ENSG00000074590|chr12:106067379-106067379|T/G|missense_variant	NUAK1|p.K470T|1|0.31|ENSG00000074590|chr12:106067379-106067379|T/G|missense_variant	NUAK1|p.K470T|1|0.31|ENSG00000074590|chr12:106067379-106067379|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.25469970703125	2	489.254163	976.493772	0.60932	0.00029811	0.60964	0.00029827	1.219	0.00059638	489.2543782270122	12.431	0.37893	12.431	12.343	12.721	0					16	9	2	0	0	0	0.6088	1	2807	2807		47.657	1.6851	1	593690			22293	11865	14421	14478	22617	22617					0.0045850739838897425
KTTSKKPK	8	Unmodified	_KTTSKKPK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.292236328125	2	459.292559	916.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.826	1	12.826	12.326	13.326	0								0	0	0	1.7419	1	2827	2827		3.9852	0	1				22294	1574	14422	14479	22618	22618					0.10894350685521204
KTTTANLMI	9	Unmodified	_KTTTANLMI_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7737121582031	2	496.775885	991.537217	-2.3348	-0.0011599	-1.5552	-0.00077258	-3.89	-0.0019325	496.7751589500115	40.808	0.2935	40.808	40.697	40.991	0					20	11	3	0	0	0	0.19605	1	14460	14460		62.107	14.45	1	318290			22295	11686	14423	14480	22619	22619					0.04110980851305612
KTTTATATPK	10	Unmodified	_KTTTATATPK_					0	0	0		ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2903137207031	2	510.290214	1018.56587	1.1953	0.00060995	-0.99637	-0.00050844	0.19893	0.00010151	510.2896922417167	13.15	0.19627	13.15	13.054	13.25	0					10	4	3	0	0	0	0.048505	1	3143	3143		109.83	32.512	1	944840			22296	8304	14424	14481	22620	22620					0.05733421752097456
KTTTATATPK	10	Unmodified	_KTTTATATPK_					0	0	0		ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.29010009765625	2	510.290214	1018.56587	1.3696	0.00069887	-1.0468	-0.00053418	0.32273	0.00016469	510.28957174955616	13.103	0.203	13.103	13.006	13.209	0					8	4	3	0	0	0	0.034064	1	2967	2967		115.23	51.698	1	396420			22297	8304	14424	14481	22621	22621					0.05733421752097456
KTTTATATPK	10	Unmodified	_KTTTATATPK_					0	0	0		ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2904357910156	2	510.290214	1018.56587	3.044	0.0015533	-2.3252	-0.0011865	0.71879	0.00036679	510.2891053100815	13.136	0.24784	13.136	12.994	13.242	0					8	5	2	0	0	0	0.030824	1	2963	2963		117.53	44.646	1	874390			22298	8304	14424	14481	22622	22622					0.05733421752097456
KTVARLFQF	9	Unmodified	_KTVARLFQF_					0	0	0			REV__nc|ENSG00000173452|Q5HYL7-3|TMEM196	REV__nc|ENSG00000173452|Q5HYL7-3|TMEM196	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.327392578125	2	555.326934	1108.63931	1.0499	0.00058303	0.14506	8.0555E-05	1.1949	0.00066359	555.327188295602	42.027	0.23298	42.027	41.926	42.159	0					8	6	2	0	0	0	0.33044	1	16748	16748		47.657	6.8792	1	48307	+		22299	16510	14425	14482	22623	22623					0.08934014985220529
KTVDGALVAAK	11	Unmodified	_KTVDGALVAAK_					0	0	0		ENST00000461436.1_1_3:152017982-152019737:+|nuORF	ENST00000461436.1_1_3:152017982-152019737:+|nuORF	ENST00000461436.1_1_3:152017982-152019737:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8232421875	2	536.821681	1071.62881	1.3539	0.00072678	-0.10697	-5.7425E-05	1.2469	0.00066936	537.3230309151431	21.464	0.07803	21.464	21.414	21.492	0					6	3	2	0	0	0	0.35352	1	5915	5915		56.632	12.255	1	77082			22300	9733	14426	14483	22624	22624					0.09585987540117458
KTVDGALVAAK	11	Unmodified	_KTVDGALVAAK_					0	0	0		ENST00000461436.1_1_3:152017982-152019737:+|nuORF	ENST00000461436.1_1_3:152017982-152019737:+|nuORF	ENST00000461436.1_1_3:152017982-152019737:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8220825195312	2	536.821681	1071.62881	2.1282	0.0011425	-1.1157	-0.00059892	1.0125	0.00054353	536.8208104839887	21.784	0.14166	21.784	21.696	21.837	0					8	3	3	0	0	0	0.10057	1	6988	6988		89.561	31.315	1	615140			22301	9733	14426	14483	22625	22625					0.09585987540117458
KTVDGALVAAK	11	Unmodified	_KTVDGALVAAK_					0	0	0		ENST00000461436.1_1_3:152017982-152019737:+|nuORF	ENST00000461436.1_1_3:152017982-152019737:+|nuORF	ENST00000461436.1_1_3:152017982-152019737:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.822265625	2	536.821681	1071.62881	0.70013	0.00037585	0.30374	0.00016306	1.0039	0.0005389	536.8218394865546	21.696	0.16837	21.696	21.587	21.755	0					6	3	2	0	0	0	0.41029	1	7115	7115		50.791	5.769	1	457850			22302	9733	14426	14483	22626	22626					0.09585987540117458
KTVDLLDRI	9	Unmodified	_KTVDLLDRI_					0	0	0			REV__ENSG00000155980|ENST00000455537|KIF5A	REV__ENSG00000155980|ENST00000455537|KIF5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.821533203125	2	536.821681	1071.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.572	1	21.572	21.072	22.072	0								0	0	0	0.33029	1	6278	6278		29.17	0.020503	1		+		22303	15616	14427	14484	22627	22627					0.09585987540117458
KTVELINYL	9	Unmodified	_KTVELINYL_					0	0	0			REV__L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|9|1|sense	REV__L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|9|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.8179321289062	2	546.818607	1091.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.672	1	12.672	12.172	13.172	0								0	0	0	0.34845	1	2909	2909		25.574	0.44807	1		+		22304	20813	14428	14485	22628	22628					0.08051469308611559
KTVIEPLKK	9	Unmodified	_KTVIEPLKK_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.345947265625	2	528.344792	1054.67503	0.20506	0.00010834	0.82637	0.00043661	1.0314	0.00054495	528.3452637040573	19.031	0.099812	19.031	18.993	19.093	0					6	3	2	0	0	0	0.22504	1	5090	5090		51.528	14.369	1	68292			22305	4780	14429	14486	22629	22629					0.14988052442231492
KTVIEPLKK	9	Unmodified	_KTVIEPLKK_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.5655822753906	3	352.56562	1054.67503	-0.04965	-1.7505E-05	0.11953	4.2141E-05	0.069877	2.4636E-05	352.5656316937417	19.253	0.21518	19.253	19.145	19.36	0					11	4	3	0	0	0	0.022698	1	5927	5927		117.53	42.482	1	1048600			22306	4780	14429	14486	22630	22630					0.14988052442231492
KTVKDAVQK	9	Unmodified	_KTVKDAVQK_					0	0	0		ENST00000539683.2_1_16:31129164-31131922:+|nuORF;KAT8|p.Y323Tfs*48|1|0.44|ENSG00000103510|chr16:31130315-31130315|C/-|frameshift_variant;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.8098449707031	2	508.808574	1015.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.843	1	13.843	13.343	14.343	0								0	0	0	0.23111	1	2766	2766		46.457	11.305	1				22307	2247	14430	14487	22631	22631					0.09541718368654983
KTVKDAVQK	9	Unmodified	_KTVKDAVQK_					0	0	0		ENST00000539683.2_1_16:31129164-31131922:+|nuORF;KAT8|p.Y323Tfs*48|1|0.44|ENSG00000103510|chr16:31130315-31130315|C/-|frameshift_variant;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8085632324219	2	508.808574	1015.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.169	1	14.169	13.669	14.669	0								0	0	0	0.015103	1	3394	3394		104.01	10.87	1				22308	2247	14430	14487	22632	22632					0.09541718368654983
KTVKDAVQK	9	Unmodified	_KTVKDAVQK_					0	0	0		ENST00000539683.2_1_16:31129164-31131922:+|nuORF;KAT8|p.Y323Tfs*48|1|0.44|ENSG00000103510|chr16:31130315-31130315|C/-|frameshift_variant;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8087158203125	2	508.808574	1015.60259	-0.54899	-0.00027933	0.83914	0.00042696	0.29015	0.00014763	508.8088125719097	13.859	0.076683	13.859	13.829	13.906	0					5	3	2	0	0	0	0.27123	1	2914	2914		53.089	12.311	1	66523			22309	2247	14430	14487	22633	22633					0.09541718368654983
KTVKDAVQK	9	Unmodified	_KTVKDAVQK_					0	0	0		ENST00000539683.2_1_16:31129164-31131922:+|nuORF;KAT8|p.Y323Tfs*48|1|0.44|ENSG00000103510|chr16:31130315-31130315|C/-|frameshift_variant;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.8085021972656	2	508.808574	1015.60259	1.327	0.00067521	-1.7617	-0.00089636	-0.43465	-0.00022115	508.8077530268094	14.095	0.1128	14.095	14.042	14.154	0					4	2	2	0	0	0	0.011389	1	3439	3439		138.06	34.006	1	536250			22310	2247	14430	14487	22634	22634					0.09541718368654983
KTVKDVQKA	9	Unmodified	_KTVKDVQKA_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-4|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF;CCDC14|p.E558Vfs*7|1|0.04|ENSG00000175455|chr3:123931228-123931229|-/TTGAATAA|frameshift_variant;CCDC14|p.E558Rfs*13|1|0.03|ENSG00000175455|chr3:123931229-123931230|-/T|frameshift_variant;CCDC14|p.V615Afs*13|1|0.05|ENSG00000175455|chr3:123915674-123915675|-/TAATGAG|frameshift_variant;CCDC14|p.D363V|1|0.13|ENSG00000175455|chr3:123946937-123946937|T/A|missense_variant;CCDC14|p.N382Mfs*2|1|0.33|ENSG00000175455|chr3:123946880-123946880|T/-|frameshift_variant	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8082580566406	2	508.808574	1015.60259	1.1538	0.00058706	-2.038	-0.0010369	-0.88419	-0.00044989	508.8076858736609	14.081	0.21012	14.081	13.923	14.133	0					9	4	3	0	0	0	0.12278	1	3586	3586		74.165	5.5392	1	679550			22311	6558	14431	14488	22635	22635					0.09541718368654983
KTVKHPKS	8	Unmodified	_KTVKHPKS_					0	0	0			REV__ENSG00000130382|ENST00000252674|MLLT1	REV__ENSG00000130382|ENST00000252674|MLLT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.78472900390625	2	462.784902	923.55525	0.68236	0.00031578	-1.0074	-0.00046621	-0.32505	-0.00015043	462.7844224946596	16.944	0.13257	16.944	16.858	16.991	0					6	3	2	0	0	0	0.71588	1	4703	4703		31.53	1.0262	1	412380	+		22312	14576	14432	14489	22636	22636					0.0904148388832482
KTVKLIAGEEA	11	Unmodified	_KTVKLIAGEEA_					0	0	0			REV__ENSG00000188282|ENST00000697321|RUFY4	REV__ENSG00000188282|ENST00000697321|RUFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.8405151367188	2	579.840071	1157.66559	1.4158	0.00082094	-0.42497	-0.00024641	0.99083	0.00057452	579.8398307953523	21.214	0.18792	21.214	21.093	21.281	0					10	4	3	0	0	0	0.27742	1	6726	6726		65.157	3.3927	1	329730	+		22313	17163	14433	14490	22637	22637					0.09306239366060254
KTVKPSGWSQE	11	Unmodified	_KTVKPSGWSQE_					0	0	0			REV__ENST00000476746.5_1_2:198360008-198364584:-|nuORF	REV__ENST00000476746.5_1_2:198360008-198364584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	623.8261108398438	2	623.824952	1245.63535	1.2776	0.00079701	1.5015	0.00093669	2.7791	0.0017337	623.8256243310414	36.936	0.23368	36.936	36.831	37.065	0					12	7	2	0	0	0	0.72624	1	14455	14455		25.126	2.5463	1	92362	+		22314	19542	14434	14491	22638	22638					0.022358807008458825
KTVNLATAG	9	Unmodified	_KTVNLATAG_					0	0	0		ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7530822753906	2	437.753267	873.491981	0.61463	0.00026905	-0.90239	-0.00039503	-0.28777	-0.00012597	437.7527733627594	18.725	0.13136	18.725	18.641	18.773	0					5	3	2	0	0	0	0.1424	1	5544	5544		69.628	2.6657	1	320930			22315	1981	14435	14492	22639	22639					0.050174983804254225
KTVPVEAVTSK	11	Unmodified	_KTVPVEAVTSK_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.8402709960938	2	579.840071	1157.66559	0.13501	7.8282E-05	0.023867	1.3839E-05	0.15887	9.2121E-05	579.8402040004207	21.102	0.16592	21.102	20.992	21.158	0					5	3	2	0	0	0	0.67983	1	6829	6829		29.551	2.5034	1	150650			22316	1733	14436	14493	22640	22640					0.09306239366037516
KTVRDSVPT	9	Unmodified	_KTVRDSVPT_					0	0	0			REV__nc|ENSG00000163631|P02768-3|ALB	REV__nc|ENSG00000163631|P02768-3|ALB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.78240966796875	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.48	1	19.48	18.98	19.98	0								0	0	0	0.29356	1	5298	5298		36.447	2.2742	1		+	+	22317	12588	14437	14494	22641	22641					0.04984554954910436
KTVRYAQM	8	Oxidation (M)	_KTVRYAQM(Oxidation (M))_		KTVRYAQM(1)		KTVRYAQM(42)	0	0	1		ENST00000578846.5_1_17:80019305-80021015:-|nuORF;ENST00000578264.1_1_17:80019305-80022125:-|nuORF;ENSG00000169718|ENST00000306796|DUS1L	ENST00000578846.5_1_17:80019305-80021015:-|nuORF	ENST00000578846.5_1_17:80019305-80021015:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7687683105469	2	506.765852	1011.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.621	1	18.621	18.121	19.121	0								0	0	0	1.7419	1	5608	5608		42.396	9.5837	1				22318	6180	14438	14495	22642	22642		254			0.011852299113456866
KTVTFARKL	9	Unmodified	_KTVTFARKL_					0	0	0		SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant;nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1;SLC9C1|p.S672Hfs*9|3|0.24|ENSG00000172139|chr3:112204376-112204376|A/-|frameshift_variant;SLC9C1|p.F702Lfs*6|1|0.31|ENSG00000172139|chr3:112204284-112204284|A/-|frameshift_variant	SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant	SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.3351440429688	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.632	1	18.632	18.132	19.132	0								0	0	0	0.3063	1	4666	4666		34.173	1.3601	1				22319	6347	14439	14496	22643	22643					0.1261430150225351
KTVTMLPPG	9	Unmodified	_KTVTMLPPG_					0	0	0		ENST00000471578.5_1_1:224734560-224753960:+|nuORF	ENST00000471578.5_1_1:224734560-224753960:+|nuORF	ENST00000471578.5_1_1:224734560-224753960:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.26922607421875	2	472.267696	942.520839	2.4462	0.0011552	1.163	0.00054925	3.6092	0.0017045	472.268141271451	13.507	0.28914	13.507	13.366	13.655	0					12	6	3	0	0	0	0.35045	1	3162	3162		45.952	45.952	1	406340			22320	9854	14440	14497	22644	22644					0.04727899685212833
KTVTQSLKK	9	Unmodified	_KTVTQSLKK_					0	0	0		ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8253784179688	2	516.824224	1031.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.647	1	11.647	11.147	12.147	0								0	0	0	0.19847	1	2286	2286		51.193	8.7966	1				22321	5730	14441	14498	22645	22645					0.11934291402735653
KTVYNPAAL	9	Unmodified	_KTVYNPAAL_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;RBM26|p.N783Ifs*5|1|0.11|ENSG00000139746|chr13:79342743-79342743|T/-|frameshift_variant;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7767028808594	2	488.776742	975.538931	-0.089233	-4.3615E-05	-0.37637	-0.00018396	-0.46561	-0.00022758	488.7765510509015	27.969	0.11591	27.969	27.907	28.023	0					7	4	2	0	0	0	0.55379	1	8688	8688		26.693	2.1737	1	99716			22322	4351	14442	14499	22646	22646					0.05018357931544415
KTWLSLKVA	9	Unmodified	_KTWLSLKVA_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000479285.5_1_1:114437689-114438127:-|nuORF	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3223876953125	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.233	1	17.233	16.733	17.733	0								0	0	0	0.18541	1	4281	4281		45.972	0	1				22323	3906	14443	14500	22647	22647					0.11263496753713298
KTYASTKLG	9	Unmodified	_KTYASTKLG_					0	0	0			REV__CEP164|p.A247Gfs*5|1|0.23|ENSG00000110274|chr11:117363476-117363477|-/G|frameshift_variant	REV__CEP164|p.A247Gfs*5|1|0.23|ENSG00000110274|chr11:117363476-117363477|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	323.5184631347656	3	323.518559	967.533846	0.2886	9.3368E-05	-0.50921	-0.00016474	-0.22061	-7.1372E-05	323.5183365066876	15.686	0.11764	15.686	15.617	15.735	0					14	5	4	0	0	0	0.56424	1	3450	3450		26.063	6.9599	1	925580	+		22324	12427	14444	14501	22648	22648					0.04878054068956317
KTYDTVHRR	9	Unmodified	_KTYDTVHRR_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.5473327636719	3	392.547511	1174.6207	0.88447	0.0003472	-1.028	-0.00040354	-0.14354	-5.6345E-05	392.5470881123431	13.862	0.088153	13.862	13.82	13.908	0					4	2	2	0	0	0	0.38666	1	3264	3264		42.864	5.0528	1	50317			22325	1663	14445	14502	22649	22649					0.04037853343356801
KTYETTLEK	9	Unmodified	_KTYETTLEK_					0	0	0		nc|ENSG00000163631|P02768-2|ALB;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-2|ALB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.7968139648438	2	556.795329	1111.5761	-0.9581	-0.00053347	2.647	0.0014738	1.6889	0.00094035	556.796875582484	19.914	0.1044	19.914	19.86	19.964	0					4	2	2	0	0	0	0.34452	1	5511	5511		46.457	7.2039	1	71418		+	22326	110	14446	14503	22650	22650					0.024779846866749722
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7932739257812	2	557.792589	1113.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.171	1	28.171	27.671	28.671	0								0	0	0	0.00095576	1	9926	9926		142.36	51.991	1				22327	4958	14447	14504	22651	22651					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.19744873046875	3	372.197485	1113.57063	-1.0424	-0.00038798	0.91345	0.00033998	-0.12895	-4.7995E-05	372.1977569758476	27.905	0.36201	27.905	27.793	28.155	0					24	13	3	0	0	0	0.19952	1	8926	8926		68.626	28.568	1	708470			22328	4958	14447	14504	22652	22652					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7929077148438	2	557.792589	1113.57063	0.11936	6.6576E-05	0.47222	0.0002634	0.59157	0.00032998	557.7928702075523	27.906	0.81915	27.906	27.762	28.581	0					76	29	5	0	0	0	0.0043467	1	8935	8935		160.82	50.702	1	4233700			22329	4958	14447	14504	22653	22653					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7928466796875	2	557.792589	1113.57063	1.7332	0.00096675	-1.1494	-0.00064111	0.58381	0.00032564	557.7918314239344	28.133	1.2242	28.133	27.798	29.022	0					69	25	5	0	0	0	0.0025398	1	10282	10282		171.33	72.701	1	21995000			22330	4958	14447	14504	22654	22654					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.1976623535156	3	372.197485	1113.57063	0.89544	0.00033328	-0.72375	-0.00026938	0.17169	6.3902E-05	372.19719859241815	28.16	1.0282	28.16	28.042	29.07	0					31	21	3	0	0	0	0.022525	1	10283	10283		133.99	43.393	1	3071000			22331	4958	14447	14504	22655	22655					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7929077148438	2	557.792589	1113.57063	1.1227	0.00062624	-0.28994	-0.00016173	0.83276	0.00046451	557.7924092977814	27.956	0.46878	27.956	27.828	28.296	0					29	11	4	0	0	0	0.029172	1	9223	9223		109.83	42.336	1	1501300			22332	4958	14447	14504	22656	22656					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7925415039062	2	557.792589	1113.57063	-0.87477	-0.00048794	1.8203	0.0010153	0.94553	0.00052741	557.7933024381509	27.948	1.0646	27.948	27.645	28.71	0					53	26	5	0	0	0	0.0059342	1	9215	9215		154.01	52.411	1	3600500			22333	4958	14447	14504	22657	22657					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7926635742188	2	557.792589	1113.57063	1.8248	0.0010179	-1.0678	-0.00059563	0.75699	0.00042225	557.7918964717959	28.099	1.2639	28.099	27.943	29.207	0					67	25	5	0	0	0	0.0093724	1	10125	10125		142.36	38.304	1	9060600			22334	4958	14447	14504	22658	22658					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7926025390625	2	557.792589	1113.57063	3.4793	0.0019407	-2.7206	-0.0015175	0.75872	0.00042321	557.7908858684699	28.078	1.4174	28.078	27.476	28.893	0					89	28	7	0	0	0	0.0043467	1	10117	10117		160.82	47.41	1	24231000			22335	4958	14447	14504	22659	22659					0.01838305894852965
KTYHALSNLP	10	Unmodified	_KTYHALSNLP_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;PSMD11|p.P204Lfs*48|2|0.42|ENSG00000108671|chr17:32469156-32469156|C/-|frameshift_variant	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.88751220703125	3	381.876746	1142.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.092	1	25.092	24.592	25.592	0								0	0	0	0.34115	1	8863	8863		44.377	1.981	1				22336	2544	14448	14505	22660	22660					0.04280816880304883
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1	ENSG00000189403|ENST00000341423|HMGB1	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.3613891601562	2	631.36117	1260.70779	0.19633	0.00012396	-0.47583	-0.00030042	-0.2795	-0.00017646	631.3608366564346	16.272	0.4278	16.272	16.148	16.576	0					40	17	3	0	0	0	0.51117	1	3650	3650		43.419	1.9919	1	188110			22337	7319	14449	14506	22661	22661					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1	ENSG00000189403|ENST00000341423|HMGB1	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2435607910156	3	421.243206	1260.70779	-0.19902	-8.3834E-05	-0.16697	-7.0337E-05	-0.36599	-0.00015417	421.24312518433516	16.287	0.68161	16.287	16.12	16.801	0					61	26	3	0	0	0	0.80453	1	3807	3807		28.384	28.384	1	654970			22338	7319	14449	14506	22662	22662					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1	ENSG00000189403|ENST00000341423|HMGB1	ENSG00000189403|ENST00000341423|HMGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.2432556152344	3	421.243206	1260.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.284	1	16.284	15.784	16.784	0								0	0	0	0.23125	1	3874	3874		69.216	26.973	1				22339	7319	14449	14506	22663	22663					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1	ENSG00000189403|ENST00000341423|HMGB1	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.2430114746094	3	421.243206	1260.70779	0.3804	0.00016024	-1.1787	-0.00049652	-0.79829	-0.00033628	421.242684511249	16.506	0.5017	16.506	16.347	16.849	0					17	10	3	0	0	0	0.63225	1	4721	4721		65.695	31.773	1	252520			22340	7319	14449	14506	22664	22664					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1	ENSG00000189403|ENST00000341423|HMGB1	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	631.3623657226562	2	631.36117	1260.70779	0.30885	0.00019499	0.99205	0.00062634	1.3009	0.00082134	631.3616752601525	16.317	0.15688	16.317	16.228	16.385	0					6	4	2	0	0	0	0.29048	1	3845	3845		63.694	24.94	1	58263			22341	7319	14449	14506	22665	22665					0.08786214774431755
KTYQDIQNTIK	11	Unmodified	_KTYQDIQNTIK_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	676.3650512695312	2	676.364441	1350.71433	-1.0371	-0.00070145	1.5408	0.0010422	0.50372	0.0003407	676.365584230957	26.754	0.14811	26.754	26.657	26.805	0					8	3	3	0	0	0	0.26698	1	9279	9279		82.831	19.297	1	197420			22342	6845	14450	14507	22666	22666					0.05300107935136111
KTYQDIQNTIK	11	Unmodified	_KTYQDIQNTIK_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	676.364501953125	2	676.364441	1350.71433	-1.5299	-0.0010347	1.8379	0.0012431	0.30803	0.00020834	676.3657305379023	26.803	0.16802	26.803	26.694	26.862	0					8	3	3	0	0	0	0.061372	1	9626	9626		100.09	38.395	1	232000			22343	6845	14450	14507	22667	22667					0.05300107935136111
KTYRGGRR	8	Unmodified	_KTYRGGRR_					0	0	0			REV__nc|ENSG00000100100|Q96FE7-2|PIK3IP1	REV__nc|ENSG00000100100|Q96FE7-2|PIK3IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.289794921875	2	497.288674	992.562795	2.902	0.0014431	-0.55433	-0.00027566	2.3476	0.0011675	497.288416586596	22.113	0.1687	22.113	22.004	22.173	0					5	3	2	0	0	0	0.67394	1	7318	7318		37.159	4.3467	1	1086700	+		22344	20954	14451	14508	22668	22668					0.06621636208626569
KTYTGHKNEK	10	Unmodified	_KTYTGHKNEK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	603.3173217773438	2	603.317294	1204.62004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.915	1	10.915	10.415	11.415	0								0	0	0	0.33238	1	2072	2072		34.087	0.16487	1				22345	7411;7353	14452	14509	22669	22669					0.02591013903656858
KTYTGHKNEK	10	Unmodified	_KTYTGHKNEK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	603.318359375	2	603.317294	1204.62004	0.74354	0.00044859	1.0727	0.0006472	1.8163	0.0010958	603.3180344622812	10.902	0.039177	10.902	10.884	10.923	0					4	2	2	0	0	0	0.0039382	1	2128	2128		159.34	87.458	1	120060			22346	7411;7353	14452	14509	22670	22670					0.02591013903656858
KTYTGHKNEK	10	Unmodified	_KTYTGHKNEK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	603.8197021484375	2	603.317294	1204.62004	3.0499	0.00184	-1.8049	-0.0010889	1.245	0.0007511	603.8173809716372	10.905	0.036797	10.905	10.886	10.923	0					4	2	2	0	0	0	0.2035	1	2078	2078		75.652	18.931	1	46669			22347	7411;7353	14452	14509	22671	22671					0.02591013903656858
KTYTKNEI	8	Unmodified	_KTYTKNEI_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.84906005859375	3	332.850197	995.528761	0.372	0.00012382	-3.1572	-0.0010509	-2.7852	-0.00092704	332.8493219909822	28.225	0.3529	28.225	28.065	28.417	0					13	11	2	0	0	0	0.79294	1	8744	8744		15.642	0	1	56630	+		22348	17589	14453	14510	22672	22672					0.030817502063200664
KTYTKSSHLK	10	Unmodified	_KTYTKSSHLK_					0	0	0		ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	ENSG00000127528|ENST00000248071|KLF2;KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.837646484375	2	596.837862	1191.66117	0.090708	5.4138E-05	-0.23461	-0.00014002	-0.1439	-8.5886E-05	596.8376872578423	13.552	0.11341	13.552	13.511	13.624	0					5	3	2	0	0	0	0.099683	1	3115	3115		74.165	15.935	1	233800			22349	3510;4113	14454	14511	22673	22673					0.073007749431099
KVACIGAWHPA	11	Unmodified	_KVACIGAWHPA_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000481985.5_1_22:39710087-39711482:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	384.8718566894531	3	384.870938	1151.59098	-0.14357	-5.5257E-05	2.4483	0.0009423	2.3048	0.00088704	384.87189753101217	18.934	0.18872	18.934	18.803	18.992	0					9	4	3	0	0	0	0.70609	1	5034	5034		27.047	1.9213	1	104620			22350	2002	14455	14512	22674	22674					0.021251980736678888
KVADFGLAR	9	Unmodified	_KVADFGLAR_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;ENST00000493775.1_1_20:36030831-36031351:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;nc|ENSG00000111816|P42685-2|FRK;ENST00000411578.6_1_3:49924742-49933170:-|nuORF;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENSG00000111816|ENST00000606080|FRK;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000105976|ENST00000397752|MET;nc|ENSG00000164078|Q04912-7|MST1R;ENSG00000111816|ENST00000606080|FRK;ENSG00000197122|ENST00000373578|SRC	ENSG00000105976|ENST00000397752|MET	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.78204345703125	2	488.782359	975.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.115	1	28.115	27.615	28.615	0								0	0	0	0.14179	1	9900	9900		72.879	21.687	1				22351	2411;5650;2700;7430	14456	14513	22675	22675					0.06141180025713311
KVADFGLAR	9	Unmodified	_KVADFGLAR_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;ENST00000493775.1_1_20:36030831-36031351:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;nc|ENSG00000111816|P42685-2|FRK;ENST00000411578.6_1_3:49924742-49933170:-|nuORF;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENSG00000111816|ENST00000606080|FRK;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000105976|ENST00000397752|MET;nc|ENSG00000164078|Q04912-7|MST1R;ENSG00000111816|ENST00000606080|FRK;ENSG00000197122|ENST00000373578|SRC	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.78277587890625	2	488.782359	975.550165	-0.07771	-3.7983E-05	0.0037278	1.8221E-06	-0.073983	-3.6161E-05	488.78223365169896	28.105	0.19469	28.105	28.012	28.207	0					7	4	2	0	0	0	0.10157	1	10248	10248		81.525	20.553	1	189830			22352	2411;5650;2700;7430	14456	14513	22676	22676					0.06141180025713311
KVADFGLVR	9	Unmodified	_KVADFGLVR_					0	0	0		ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7980651855469	2	502.798009	1003.58147	0.7252	0.00036463	0.1151	5.7871E-05	0.8403	0.0004225	502.7976795203298	31.258	0.17844	31.258	31.124	31.302	0					8	4	3	0	0	0	0.33548	1	11373	11373		56.434	10.482	1	211860			22353	6481	14457	14514	22677	22677					0.07981753059812036
KVADFGLVR	9	Unmodified	_KVADFGLVR_					0	0	0		ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7984313964844	2	502.798009	1003.58147	-0.48278	-0.00024274	1.1036	0.00055491	0.62087	0.00031217	502.79850373110196	31.196	0.21023	31.196	31.126	31.336	0					10	4	3	0	0	0	0.30923	1	11644	11644		58.246	27.929	1	120770			22354	6481	14457	14514	22678	22678					0.07981753059812036
KVADHSGQVK	10	Unmodified	_KVADHSGQVK_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF;ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7943115234375	2	534.793455	1067.57236	0.16589	8.8714E-05	0.70072	0.00037474	0.86661	0.00046346	534.7938592240133	12.684	0.23453	12.684	12.563	12.797	0					10	7	2	0	0	0	0.023179	1	2716	2716		122.94	10.528	1	738120			22355	9922	14458	14515	22679	22679					0.04127359703466027
KVADHSGQVK	10	Unmodified	_KVADHSGQVK_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF;ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7937622070312	2	534.793455	1067.57236	-0.58304	-0.00031181	2.498	0.0013359	1.9149	0.0010241	534.7944983335394	12.445	0.070666	12.445	12.392	12.463	0					7	4	2	0	0	0	0.0060268	1	2459	2459		162.64	61.035	1	77854			22356	9922	14458	14515	22680	22680					0.04127359703466027
KVADHSGQVK	10	Unmodified	_KVADHSGQVK_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF;ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7938842773438	2	534.793455	1067.57236	1.7857	0.000955	-1.116	-0.00059684	0.66972	0.00035816	534.7929403136297	12.674	0.22646	12.674	12.588	12.815	0					9	5	2	0	0	0	0.013123	1	2920	2920		131.12	24.108	1	2510500			22357	9922	14458	14515	22681	22681					0.04127359703466027
KVADHSGQVK	10	Unmodified	_KVADHSGQVK_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF;ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7948608398438	2	534.793455	1067.57236	1.0953	0.00058578	2.0515	0.0010971	3.1469	0.0016829	534.7945853539097	12.396	0.037632	12.396	12.367	12.404	0					4	2	2	0	0	0	0.25899	1	2399	2399		72.243	6.7779	1	49142			22358	9922	14458	14515	22682	22682					0.04127359703466027
KVADHSGQVK	10	Unmodified	_KVADHSGQVK_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF;ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7942504882812	2	534.793455	1067.57236	-1.3436	-0.00071857	3.0089	0.0016091	1.6652	0.00089055	534.7948848627103	12.387	0.068948	12.387	12.346	12.415	0					8	4	2	0	0	0	0.16075	1	2397	2397		84.817	26.587	1	57629			22359	9922	14458	14515	22683	22683					0.04127359703466027
KVADHSGQVK	10	Unmodified	_KVADHSGQVK_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF;ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7940063476562	2	534.793455	1067.57236	1.854	0.00099149	-0.69385	-0.00037107	1.1601	0.00062042	534.7931184743695	12.652	0.27277	12.652	12.612	12.885	0					10	6	3	0	0	0	0.011683	1	2753	2753		136.52	35.055	1	493770			22360	9922	14458	14515	22684	22684					0.04127359703466027
KVADHSGQVK	10	Unmodified	_KVADHSGQVK_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF;ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.86474609375	3	356.864729	1067.57236	1.3659	0.00048743	-1.6008	-0.00057127	-0.23495	-8.3844E-05	356.8641527727134	12.652	0.226	12.652	12.612	12.838	0					7	5	2	0	0	0	0.48965	1	2755	2755		84.817	38.845	1	72655			22361	9922	14458	14515	22685	22685					0.04127359703466027
KVADSKTLL	9	Unmodified	_KVADSKTLL_					0	0	0		ENST00000590279.1_1_19:12917826-12918144:+|nuORF;ENST00000590121.1_1_19:12917502-12918326:+|nuORF;ENSG00000104889|ENST00000221486|RNASEH2A	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.79815673828125	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.177	1	19.177	18.677	19.677	0								0	0	0	0.37233	1	5148	5148		19.104	2.6304	1				22362	2318	14459	14516	22686	22686					0.09294913620101397
KVAGAATPK	9	Unmodified	_KVAGAATPK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.7587585449219	2	421.758352	841.502152	0.39528	0.00016671	-0.53091	-0.00022392	-0.13563	-5.7204E-05	421.7581170263033	13.647	0.26799	13.647	13.472	13.74	0					35	14	4	0	0	0	0.095583	1	2677	2677		80.455	6.1996	1	545530			22363	3386	14460	14517	22687	22687					0.07506106105665822
KVAGAATPKK	10	Unmodified	_KVAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.806396484375	2	485.805834	969.597115	-0.022635	-1.0996E-05	1.0521	0.0005111	1.0294	0.0005001	485.80640471573764	12.574	0.16305	12.574	12.474	12.637	0					14	9	2	0	0	0	0.28675	1	2389	2389		68.846	22.874	1	78932			22364	3386	14461	14518	22688	22688					0.11110039576851705
KVAGAATPKK	10	Unmodified	_KVAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.8059997558594	2	485.805834	969.597115	-0.089098	-4.3284E-05	0.028442	1.3817E-05	-0.060656	-2.9467E-05	485.80584630794266	12.796	0.316	12.796	12.642	12.958	0					14	7	3	0	0	0	0.0077833	1	2989	2989		154.01	63.235	1	271260			22365	3386	14461	14518	22689	22689					0.11110039576851705
KVAGAATPKK	10	Unmodified	_KVAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.8052062988281	2	485.805834	969.597115	0.64989	0.00031572	-1.3528	-0.0006572	-0.70291	-0.00034148	485.8052109380183	12.832	0.2712	12.832	12.671	12.942	0					9	6	2	0	0	0	0.22691	1	2983	2983		76.17	24.977	1	163720			22366	3386	14461	14518	22690	22690					0.11110039576851705
KVAGAATPKK	10	Unmodified	_KVAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.805908203125	2	485.805834	969.597115	0.35886	0.00017434	0.18032	8.7599E-05	0.53918	0.00026194	485.805965660774	12.552	0.12497	12.552	12.453	12.578	0					12	7	2	0	0	0	0.44292	1	2426	2426		51.528	7.411	1	49601			22367	3386	14461	14518	22691	22691					0.11110039576851705
KVAGAATPKK	10	Unmodified	_KVAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.80584716796875	2	485.805834	969.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.561	1	12.561	12.061	13.061	0								0	0	0	0.22047	1	2442	2442		61.691	24.532	1				22368	3386	14461	14518	22692	22692					0.11110039576851705
KVAGAATPKK	10	Unmodified	_KVAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.8056640625	2	485.805834	969.597115	-0.56018	-0.00027214	-0.13829	-6.7184E-05	-0.69847	-0.00033932	485.80572965421686	12.798	0.40474	12.798	12.542	12.947	0					16	9	3	0	0	0	0.23612	1	2761	2761		75.043	16.261	1	664370			22369	3386	14461	14518	22693	22693					0.11110039576851705
KVAGRIHAK	9	Unmodified	_KVAGRIHAK_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.3112487792969	2	490.311618	978.608683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.538	1	13.538	13.038	14.038	0								0	0	0	0.2591	1	3165	3165		42.396	5.237	1				22370	1371;9655	14462	14519	22694	22694					0.11852281390827102
KVAIKIISK	9	Unmodified	_KVAIKIISK_					0	0	0		ENST00000439346.5_1_22:29095780-29107983:-|nuORF;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.9021911621094	3	333.902344	998.685202	0.38657	0.00012908	-0.60824	-0.00020309	-0.22167	-7.4016E-05	333.902117964755	22.228	0.11481	22.228	22.17	22.285	0					4	2	2	0	0	0	0.12834	1	7507	7507		72.879	16.445	1	214060			22371	6982	14463	14520	22695	22695					0.18580660167469887
KVAIKVIDKK	10	Unmodified	_KVAIKVIDKK_					0	0	0		HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant;ENSG00000142149|ENST00000270112|HUNK	HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant	HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.2607421875	3	381.26042	1140.75943	0.76361	0.00029113	-0.69964	-0.00026674	0.063967	2.4388E-05	381.26054957272635	18.422	0.14813	18.422	18.353	18.501	0					7	3	3	0	0	0	0.25899	1	5390	5390		72.243	27.221	1	67527			22372	4483	14464	14521	22696	22696					0.1946800325897584
KVAIKVIDKK	10	Unmodified	_KVAIKVIDKK_					0	0	0		HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant;ENSG00000142149|ENST00000270112|HUNK	HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant	HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.26031494140625	3	381.26042	1140.75943	0.21652	8.2552E-05	-0.19708	-7.5138E-05	0.019448	7.4147E-06	381.2602426810544	18.369	0.21788	18.369	18.309	18.527	0					7	4	3	0	0	0	0.25899	2	5635	5616;5635		72.243	19.154	1	315070			22373	4483	14464	14521	22697;22698	22698					0.1946800325897584
KVAIKVIDKK	10	Unmodified	_KVAIKVIDKK_					0	0	0		HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant;ENSG00000142149|ENST00000270112|HUNK	HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant	HUNK|p.K100Rfs*18|1|0.51|ENSG00000142149|chr21:31924501-31924501|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.2607421875	3	381.26042	1140.75943	-0.51267	-0.00019546	1.0837	0.00041317	0.57102	0.00021771	381.26074309209264	18.379	0.16702	18.379	18.271	18.438	0					7	3	3	0	0	0	0.11048	1	5481	5481		93.598	31.906	1	316750			22374	4483	14464	14521	22699	22699					0.1946800325897584
KVAISFMKE	9	Oxidation (M)	_KVAISFM(Oxidation (M))KE_		KVAISFM(1)KE		KVAISFM(96)KE	0	0	1		PPP5C|p.T187A|1|0.4|ENSG00000011485|chr19:46376500-46376500|A/G|missense_variant	PPP5C|p.T187A|1|0.4|ENSG00000011485|chr19:46376500-46376500|A/G|missense_variant	PPP5C|p.T187A|1|0.4|ENSG00000011485|chr19:46376500-46376500|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7943725585938	2	534.791535	1067.56852	3.3738	0.0018043	1.1954	0.00063927	4.5691	0.0024435	534.7922496908424	12.685	0.22325	12.685	12.599	12.822	0					14	5	4	0	0	0	0.047412	1	2747	2747		96.19	96.19	1	1102100			22375	11966	14465	14522	22700	22700		469			0.037435538853969774
KVAITRLEQ	9	Unmodified	_KVAITRLEQ_					0	0	0		ENST00000490844.1_1_10:50943276-50946169:-|nuORF;nc|ENSG00000197444|Q9ULD0-3|OGDHL;nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL	ENST00000490844.1_1_10:50943276-50946169:-|nuORF	ENST00000490844.1_1_10:50943276-50946169:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.322265625	2	529.321848	1056.62914	0.071473	3.7832E-05	-0.23244	-0.00012303	-0.16096	-8.5201E-05	529.321650431238	21.638	1.368	21.638	21.546	22.914	0					102	43	5	0	0	0	0.15163	1	6378	6378		67.494	1.0644	1	39724000			22376	7460	14466	14523	22701	22701					0.10309407259978798
KVAKSPKKA	9	Unmodified	_KVAKSPKKA_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.8154296875	2	478.816202	955.617851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.01	1	11.01	10.51	11.51	0								0	0	0	0.18645	1	2160	2160		52.937	12.159	1				22377	7222;7010	14467	14524	22702	22702					0.13826629956508896
KVAKSPKKAK	10	Unmodified	_KVAKSPKKAK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.8649291992188	2	542.863683	1083.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.653	1	10.653	10.153	11.153	0								0	0	0	0.328	1	2062	2062		46.457	17.307	1				22378	7222;7010	14468	14525	22703	22703					0.1743056342768341
KVAMLRQI	8	Oxidation (M)	_KVAM(Oxidation (M))LRQI_		KVAM(1)LRQI		KVAM(56)LRQI	0	0	1		NSMAF|p.T555R|1|0.31|ENSG00000035681|chr8:58597515-58597515|G/C|missense_variant	NSMAF|p.T555R|1|0.31|ENSG00000035681|chr8:58597515-58597515|G/C|missense_variant	NSMAF|p.T555R|1|0.31|ENSG00000035681|chr8:58597515-58597515|G/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.53094482421875	3	325.532034	973.574271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.682	1	25.682	25.182	26.182	0								0	0	0	1.7419	1	8806	8806		55.504	7.8469	1				22379	11864	14469	14526	22704	22704		465			0.0864269718772448
KVANGRVFTL	10	Unmodified	_KVANGRVFTL_					0	0	0		VWCE|p.Q698R|1|0.28|ENSG00000167992|chr11:61265002-61265002|T/C|missense_variant	VWCE|p.Q698R|1|0.28|ENSG00000167992|chr11:61265002-61265002|T/C|missense_variant	VWCE|p.Q698R|1|0.28|ENSG00000167992|chr11:61265002-61265002|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.8301391601562	2	552.82984	1103.64513	0.22497	0.00012437	-0.05603	-3.0975E-05	0.16894	9.3397E-05	552.8300621733208	21.923	0.10361	21.923	21.852	21.956	0					5	3	2	0	0	0	0.33468	1	6371	6371		51.193	30.246	1	56714			22380	23108	14470	14527	22705	22705					0.09745113496887825
KVANGRVFTL	10	Unmodified	_KVANGRVFTL_					0	0	0		VWCE|p.Q698R|1|0.28|ENSG00000167992|chr11:61265002-61265002|T/C|missense_variant	VWCE|p.Q698R|1|0.28|ENSG00000167992|chr11:61265002-61265002|T/C|missense_variant	VWCE|p.Q698R|1|0.28|ENSG00000167992|chr11:61265002-61265002|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.830322265625	2	552.82984	1103.64513	-1.2431	-0.00068725	1.5066	0.00083292	0.26349	0.00014567	552.8309172678354	21.982	0.14549	21.982	21.888	22.033	0					5	3	2	0	0	0	0.59255	1	6482	6482		30.318	0	1	80030			22381	23108	14470	14527	22706	22706					0.09745113496887825
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.3182678222656	2	490.318577	978.622602	-1.2563	-0.00061598	0.80376	0.0003941	-0.45252	-0.00022188	490.31889649354565	19.317	0.14756	19.317	19.243	19.39	0					9	4	3	0	0	0	0.029105	1	5216	5216		118.74	59.961	1	434100			22382	4819	14471	14528	22707	22707					0.1324351409926976
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.31842041015625	2	490.318577	978.622602	0.59597	0.00029221	-0.98818	-0.00048452	-0.39222	-0.00019231	490.3180683348993	19.518	0.21294	19.518	19.412	19.625	0					13	4	4	0	0	0	0.033694	1	6199	6199		115.49	57.683	1	2356800			22383	4819	14471	14528	22708	22708					0.1324351409926976
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.3183288574219	2	490.318577	978.622602	-0.11513	-5.6452E-05	-0.50082	-0.00024556	-0.61596	-0.00030202	490.3183168356961	19.36	0.094341	19.36	19.274	19.369	0					4	2	2	0	0	0	0.12896	1	5234	5234		90.37	27.064	1	409110			22384	4819	14471	14528	22709	22709					0.1324351409926976
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.3668212890625	2	554.366059	1106.71756	1.4148	0.00078429	0.32449	0.00017989	1.7392	0.00096418	554.3660672995902	16.753	0.095661	16.753	16.69	16.786	0					5	3	2	0	0	0	0.4771	1	3883	3883		44.377	23.43	1	71718			22385	4819	14472	14529	22710	22710					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.3665771484375	2	554.366059	1106.71756	1.8169	0.0010072	-0.96456	-0.00053472	0.85231	0.00047249	554.3654413803714	17.058	0.09166	17.058	16.98	17.071	0					6	2	3	0	0	0	0.029346	1	4741	4741		98.582	47.389	1	458500			22386	4819	14472	14529	22711	22711					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.9130554199219	3	369.913131	1106.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.068	1	17.068	16.568	17.568	0								0	0	0	0.047502	1	4750	4750		88.134	59.557	1				22387	4819	14472	14529	22712	22712					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.36669921875	2	554.366059	1106.71756	0.15734	8.7221E-05	0.60442	0.00033507	0.76176	0.00042229	554.3664204697199	16.77	0.10948	16.77	16.699	16.808	0					10	4	3	0	0	0	0.26168	1	4071	4071		58.23	21.783	1	113250			22388	4819	14472	14529	22713	22713					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.9130859375	3	369.913131	1106.71756	-1.0197	-0.00037721	1.1884	0.00043961	0.16869	6.24E-05	369.913601142675	16.77	0.10948	16.77	16.699	16.808	0					9	4	3	0	0	0	0.035268	1	4083	4083		112.3	45.333	1	105350			22389	4819	14472	14529	22714	22714					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.9130859375	3	369.913131	1106.71756	1.008	0.00037288	-0.95391	-0.00035287	0.054098	2.0011E-05	369.9127262575173	17.004	0.2189	17.004	16.896	17.115	0					10	4	4	0	0	0	5.7103E-06	1	4984	4984		183.72	128.64	1	1722600			22390	4819	14472	14529	22715	22715					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.24737548828125	3	369.913131	1106.71756	-2.0913	-0.0007736	1.5276	0.00056508	-0.56369	-0.00020852	369.9137183890934	16.826	0.084641	16.826	16.762	16.846	0					6	2	3	0	0	0	0.035268	1	4066	4066		112.3	54.049	1	109720			22391	4819	14472	14529	22716	22716					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.36669921875	2	554.366059	1106.71756	-1.1287	-0.00062572	1.661	0.00092078	0.53225	0.00029506	554.3671711745053	16.808	0.084641	16.808	16.762	16.846	0					6	2	3	0	0	0	0.34891	1	4068	4068		56.434	1.7114	1	61007			22392	4819	14472	14529	22717	22717					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.91302490234375	3	369.913131	1106.71756	0.86065	0.00031837	-1.1632	-0.0004303	-0.30259	-0.00011193	369.9126868425192	16.979	0.16421	16.979	16.875	17.039	0					10	3	4	0	0	0	0.080725	1	4825	4825		94.409	52.071	1	856560			22393	4819	14472	14529	22718	22718					0.1684744757046701
KVAQATKP	8	Unmodified	_KVAQATKP_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7582702636719	2	421.758352	841.502152	-0.15605	-6.5815E-05	-0.26951	-0.00011367	-0.42556	-0.00017948	421.7582399030432	13.897	0.30969	13.897	13.748	14.058	0					15	6	4	0	0	0	0.22071	1	3455	3455		129.68	17.272	1	2074800			22394	6255	14473	14530	22719	22719					0.07506106105665822
KVAQATKP	8	Unmodified	_KVAQATKP_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7580871582031	2	421.758352	841.502152	-0.33185	-0.00013996	-0.043793	-1.847E-05	-0.37565	-0.00015843	421.7583360272226	13.872	0.60243	13.872	13.671	14.273	0					27	12	4	0	0	0	0.2678	1	3266	3266		93.195	14.932	1	5656400			22395	6255	14473	14530	22720	22720					0.07506106105665822
KVASALGIG	9	Unmodified	_KVASALGIG_					0	0	0		ENSG00000174529|ENST00000367167|TMEM81	ENSG00000174529|ENST00000367167|TMEM81	ENSG00000174529|ENST00000367167|TMEM81	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.25250244140625	2	408.252903	814.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.735	1	13.735	13.235	14.235	0								0	0	0	0.3693	1	3410	3410		19.997	0	1				22396	6496	14474	14531	22721	22721					0.07658703731374317
KVATKLGVRK	10	Unmodified	_KVATKLGVRK_					0	0	0		nc|ENSG00000169016|O75461-2|E2F6;ENST00000468775.1_1_2:11591697-11606038:-|nuORF;nc|ENSG00000169016|O75461-3|E2F6;ENSG00000169016|ENST00000381525|E2F6	nc|ENSG00000169016|O75461-2|E2F6	nc|ENSG00000169016|O75461-2|E2F6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.248291015625	3	367.248514	1098.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.82	1	15.82	15.32	16.32	0								0	0	0	0.4201	1	4402	4402		20.837	2.5751	1				22397	6140	14475	14532	22722	22722					0.17829965801979597
KVAVATPAK	9	Unmodified	_KVAVATPAK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.78167724609375	2	442.781828	883.549102	0.73119	0.00032376	-0.20185	-8.9376E-05	0.52933	0.00023438	442.7816471437905	16.764	0.30735	16.764	16.616	16.923	0					26	12	3	0	0	0	0.022525	1	3847	3847		117.81	29.168	1	319740			22398	2879	14476	14533	22723	22723					0.10266965656785487
KVAVATPAK	9	Unmodified	_KVAVATPAK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7817077636719	2	442.781828	883.549102	-0.10652	-4.7166E-05	-0.31734	-0.00014051	-0.42386	-0.00018768	442.7816626111649	17.08	0.42138	17.08	16.83	17.251	0					31	10	4	0	0	0	0.19952	1	4672	4672		61.691	6.1871	1	2225300			22399	2879	14476	14533	22724	22724					0.10266965656785487
KVAVATPAKK	10	Unmodified	_KVAVATPAKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.8287353515625	2	506.829309	1011.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.77	1	14.77	14.27	15.27	0								0	0	0	0.14926	1	3098	3098		85.862	20.059	1				22400	2879	14477	14534	22725	22725					0.1387089912797137
KVAVATPAKK	10	Unmodified	_KVAVATPAKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.8288879394531	2	506.829309	1011.64407	0.85486	0.00043327	-1.0672	-0.00054089	-0.21234	-0.00010762	506.8285923166334	15.076	0.27179	15.076	14.902	15.174	0					17	6	4	0	0	0	0.01169	1	3808	3808		136.99	72.782	1	683710			22401	2879	14477	14534	22726	22726					0.1387089912797137
KVAVATPAKK	10	Unmodified	_KVAVATPAKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.8294372558594	2	506.829309	1011.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.828	1	14.828	14.328	15.328	0								0	0	0	0.30898	1	3215	3215		45.022	14.519	1				22402	2879	14477	14534	22727	22727					0.1387089912797137
KVAVATPAKK	10	Unmodified	_KVAVATPAKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.8292236328125	2	506.829309	1011.64407	-0.20482	-0.00010381	0.29919	0.00015164	0.094366	4.7827E-05	506.8293577439979	15.021	0.31919	15.021	14.811	15.13	0					16	6	3	0	0	0	0.071617	1	3859	3859		109.83	56.478	1	470470			22403	2879	14477	14534	22728	22728					0.1387089912797137
KVAVGVAVAA	10	Unmodified	_KVAVGVAVAA_					0	0	0		ENST00000555412.1_1_14:70234559-70234658:+|nuORF	ENST00000555412.1_1_14:70234559-70234658:+|nuORF	ENST00000555412.1_1_14:70234559-70234658:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.78155517578125	2	442.781828	883.549102	-0.50502	-0.00022361	0.19178	8.4916E-05	-0.31324	-0.0001387	442.78190105797063	16.996	0.41321	16.996	16.796	17.209	0					23	8	4	0	0	0	0.26673	1	4807	4807		71.296	0.47949	1	4260900			22404	10659	14478	14535	22729	22729					0.10266965656785487
KVAVSDMKK	9	Unmodified	_KVAVSDMKK_					0	0	0		ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant	ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2915954589844	2	503.291702	1004.56885	-0.49877	-0.00025103	0.28052	0.00014118	-0.21825	-0.00010984	503.29188303364344	16.004	0.11794	16.004	15.946	16.064	0					4	2	2	0	0	0	0.25716	1	4500	4500		54.776	8.8244	1	246280			22405	36	14479	14536	22730	22730					0.06674973605254308
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.3427734375	2	499.342052	996.669552	0.29734	0.00014847	0.66665	0.00033289	0.96399	0.00048136	499.34248096159905	26.282	0.17959	26.282	26.219	26.398	0					8	5	2	0	0	0	0.34452	1	7964	7964		56.721	6.6965	1	137970			22406	6101	14480	14537	22731	22731					0.17108373650432895
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.2301330566406	3	333.23046	996.669552	0.25829	8.6071E-05	-0.88486	-0.00029486	-0.62656	-0.00020879	333.2301123172336	26.302	0.14761	26.302	26.213	26.361	0					6	4	2	0	0	0	0.36892	1	7981	7981		44.377	7.9304	1	66351			22407	6101	14480	14537	22732	22732					0.17108373650432895
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.3419189453125	2	499.342052	996.669552	0.57731	0.00028827	-1.0237	-0.00051116	-0.44635	-0.00022288	499.3414853692059	26.555	0.19213	26.555	26.465	26.657	0					6	4	2	0	0	0	0.022525	1	9185	9185		138.83	59.374	1	146510			22408	6101	14480	14537	22733	22733					0.17108373650432895
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.341796875	2	499.342052	996.669552	0.67303	0.00033607	-0.96452	-0.00048162	-0.29149	-0.00014555	499.34150856214046	26.539	0.32248	26.539	26.453	26.775	0					16	7	4	0	0	0	0.0097668	1	9178	9178		152.47	73.02	1	1360500			22409	6101	14480	14537	22734	22734					0.17108373650432895
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.23040771484375	3	333.23046	996.669552	0.52108	0.00017364	-0.60223	-0.00020068	-0.081152	-2.7042E-05	333.23021584803257	26.572	0.18991	26.572	26.481	26.671	0					13	4	4	0	0	0	0.28897	1	9194	9194		51.193	12.439	1	743120			22410	6101	14480	14537	22735	22735					0.17108373650432895
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.3417053222656	2	499.342052	996.669552	-0.010793	-5.3895E-06	-0.60699	-0.0003031	-0.61779	-0.00030849	499.34169563139017	26.533	0.318	26.533	26.426	26.744	0					18	6	4	0	0	0	0.0097668	1	9495	9495		152.47	61.694	1	2314000			22411	6101	14480	14537	22736	22736					0.17108373650432895
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.34246826171875	2	499.342052	996.669552	-0.34966	-0.0001746	1.0355	0.00051707	0.68584	0.00034247	499.3425368070571	26.361	0.19678	26.361	26.259	26.456	0					9	4	3	0	0	0	0.0080613	1	8462	8462		143.11	71.811	1	206230			22412	6101	14480	14537	22737	22737					0.17108373650432895
KVAVVLIQK	9	Unmodified	_KVAVVLIQK_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.3417053222656	2	499.342052	996.669552	-0.72364	-0.00036134	0.3926	0.00019604	-0.33104	-0.0001653	499.34224384942803	26.51	0.37187	26.51	26.4	26.772	0					19	7	4	0	0	0	0.015496	1	9363	9363		152.47	73.02	1	3215400			22413	6101	14480	14537	22738	22738					0.17108373650432895
KVCEKVQRK	9	Carbamidomethyl (C)	_KVC(Carbamidomethyl (C))EKVQRK_	KVC(1)EKVQRK		KVC(91)EKVQRK		0	1	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENSG00000198176|ENST00000375370|TFDP1;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-3|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;nc|ENSG00000114126|Q14188-5|TFDP2;nc|ENSG00000114126|Q14188-8|TFDP2;ENSG00000114126|ENST00000489671|TFDP2	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.8400268554688	2	587.839882	1173.66521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.727	1	12.727	12.227	13.227	0								0	0	0	0.040385	1	2737	2737		90.601	20.973	1				22414	10569	14481	14538	22739	22739	427				0.08532541165186558
KVCEKVQRK	9	Carbamidomethyl (C)	_KVC(Carbamidomethyl (C))EKVQRK_	KVC(1)EKVQRK		KVC(51)EKVQRK		0	1	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENSG00000198176|ENST00000375370|TFDP1;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-3|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;nc|ENSG00000114126|Q14188-5|TFDP2;nc|ENSG00000114126|Q14188-8|TFDP2;ENSG00000114126|ENST00000489671|TFDP2	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2287902832031	3	392.229014	1173.66521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.709	1	12.709	12.209	13.209	0								0	0	0	0.19847	1	2927	2927		51.193	22.023	1				22415	10569	14481	14538	22740	22740	427				0.08532541165186558
KVCMLCSVGYH	11	Carbamidomethyl (C),Oxidation (M)	_KVC(Carbamidomethyl (C))M(Oxidation (M))LCSVGYH_	KVC(0.959)MLC(0.041)SVGYH	KVCM(1)LCSVGYH	KVC(14)MLC(-14)SVGYH	KVCM(53)LCSVGYH	0	1	1		ENST00000512760.5_1_4:79841695-79860421:-|nuORF	ENST00000512760.5_1_4:79841695-79860421:-|nuORF	ENST00000512760.5_1_4:79841695-79860421:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	656.7976684570312	2	656.795968	1311.57738	2.264	0.001487	0.26032	0.00017098	2.5243	0.0016579	656.7962016183232	15.575	0.36677	15.575	15.467	15.834	0					9	7	2	0	0	0	0.3865	1	4298	4298		52.937	7.9145	2	1780700			22416	10241	14482	14539	22741	22741	413	407			-0.06594163812064835
KVCNPIITK	9	Unmodified	_KVCNPIITK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.3033752441406	2	508.30207	1014.58959	1.8084	0.00091923	-0.76306	-0.00038786	1.0454	0.00053136	508.3017060736417	22.646	0.23371	22.646	22.511	22.745	0					10	7	2	0	0	0	0.032181	1	6427	6427		101.25	44.532	1	45079			22417	2601	14483	14540	22742	22742					0.08287563984902135
KVCNPIITK	9	Unmodified	_KVCNPIITK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.3019714355469	2	508.30207	1014.58959	0.99266	0.00050457	-0.1716	-8.7226E-05	0.82106	0.00041735	508.3020349561539	22.959	0.34424	22.959	22.817	23.161	0					20	8	3	0	0	0	0.01942	1	7501	7501		141.52	81.402	1	340060			22418	2601	14483	14540	22743	22743					0.08287563984902135
KVCNPIITK	9	Unmodified	_KVCNPIITK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.30206298828125	2	508.30207	1014.58959	0.18553	9.4303E-05	0.017841	9.0684E-06	0.20337	0.00010337	508.3020180106081	22.871	0.3675	22.871	22.711	23.078	0					16	7	3	0	0	0	0.021015	1	7814	7814		115.49	69.522	1	234040			22419	2601	14483	14540	22744	22744					0.08287563984902135
KVCSLLEP	8	Unmodified	_KVCSLLEP_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7484130859375	2	444.746596	887.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.831	1	12.831	12.331	13.331	0								0	0	0	1.7419	1	2786	2786		12.959	0	1				22420	5309	14484	14541	22745	22745					0.030399242768339718
KVCTGPKSAV	10	Carbamidomethyl (C)	_KVC(Carbamidomethyl (C))TGPKSAV_	KVC(1)TGPKSAV		KVC(55)TGPKSAV		0	1	0			REV__ABTB1|p.P318Qfs*36|2|0.4|ENSG00000114626|chr3:127677762-127677762|C/-|frameshift_variant	REV__ABTB1|p.P318Qfs*36|2|0.4|ENSG00000114626|chr3:127677762-127677762|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7868041992188	2	523.786784	1045.55902	1.4706	0.00077027	-2.5225	-0.0013212	-1.0519	-0.00055096	523.7859260674787	15.52	0.14219	15.52	15.468	15.61	0					6	5	2	0	0	0	0.41335	1	3398	3398		54.776	8.3195	1	112410	+		22421	12047	14485	14542	22746	22746	478				0.03805785599865885
KVDAGGKVK	9	Unmodified	_KVDAGGKVK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2769470214844	2	451.276909	900.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.674	1	12.674	12.174	13.174	0								0	0	0	0.018912	1	2754	2754		101.25	1.8777	1				22422	1792	14486	14543	22747	22747					0.08501777651417797
KVDGAYVAV	9	Unmodified	_KVDGAYVAV_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.256103515625	2	461.255643	920.496732	-0.84357	-0.0003891	0.26803	0.00012363	-0.57554	-0.00026547	461.2557638310587	34.248	0.68056	34.248	34.092	34.772	0					70	30	5	0	0	0	0.48389	1	11641	11641		34.173	3.6689	1	5154900			22423	2292;23086	14487	14544	22748	22748					0.03330382523188291
KVDKSDTPS	9	Unmodified	_KVDKSDTPS_					0	0	0			REV__ENSG00000117501|ENST00000367759|MROH9	REV__ENSG00000117501|ENST00000367759|MROH9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7528991699219	2	488.750921	975.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.387	1	12.387	11.887	12.887	0								0	0	0	0.24544	1	2621	2621		44.377	0.26039	1		+		22424	14197	14488	14545	22749	22749					-0.0014343055299832486
KVDPEMLEH	9	Unmodified	_KVDPEMLEH_					0	0	0			REV__CPZ|p.E240D|1|0.36|ENSG00000109625|chr4:8605999-8605999|G/T|missense_variant	REV__CPZ|p.E240D|1|0.36|ENSG00000109625|chr4:8605999-8605999|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2669677734375	2	549.268424	1096.5223	0.36564	0.00020084	-2.5815	-0.0014179	-2.2158	-0.0012171	549.2668429869518	29.131	0.10453	29.131	29.058	29.162	0					8	4	2	0	0	0	0.41113	1	9456	9456		40.778	7.9657	1	96420	+		22425	12633	14489	14546	22750	22750					-0.022105110167103703
KVDSPSKKK	9	Unmodified	_KVDSPSKKK_					0	0	0		LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant;ENSG00000101577|ENST00000677752|LPIN2	LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant	LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8089294433594	2	508.808574	1015.60259	1.1535	0.00058692	-0.31247	-0.00015899	0.84104	0.00042793	508.808426778727	10.685	0.15343	10.685	10.539	10.693	0					11	7	3	0	0	0	0.070005	1	2063	2063		88.177	13.134	1	384790			22426	2130	14490	14547	22751	22751					0.09541718368666352
KVDWISPS	8	Unmodified	_KVDWISPS_					0	0	0			REV__TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant	REV__TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2451477050781	2	466.247818	930.481082	-0.6705	-0.00031262	-4.4667	-0.0020826	-5.1372	-0.0023952	466.245778736407	12.886	0.1022	12.886	12.826	12.928	0					5	3	2	0	0	0	0.60719	1	2818	2818		47.916	1.9636	1	87729	+		22427	15495	14491	14548	22752	22752					0.013060960061352489
KVEAGWPSLI	10	Unmodified	_KVEAGWPSLI_					0	0	0			REV__ENST00000413631.1_1_13:111590511-111591024:+|nuORF	REV__ENST00000413631.1_1_13:111590511-111591024:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.3098754882812	2	550.310949	1098.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.718	1	39.718	39.218	40.218	0								0	0	0	0.33707	1	12884	12884		45.022	12.21	1		+		22428	15207	14492	14549	22753	22753					0.06198602511426543
KVEAQLVRL	9	Unmodified	_KVEAQLVRL_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3331298828125	2	528.332216	1054.64988	0.70395	0.00037192	0.71165	0.00037599	1.4156	0.00074791	528.3324522665388	18.303	0.21501	18.303	18.223	18.438	0					7	4	3	0	0	0	0.40353	1	5482	5482		42.396	3.59	1	270490	+		22429	13250	14493	14550	22754	22754					0.12473997639654044
KVEDKLKT	8	Unmodified	_KVEDKLKT_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	REV__nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7899169921875	2	480.78985	959.565146	-0.10886	-5.234E-05	0.15491	7.4479E-05	0.046048	2.2139E-05	480.7899897598071	18.419	0.26827	18.419	18.309	18.578	0					11	5	3	0	0	0	0.5535	1	5660	5660		54.776	3.5836	1	237690	+		22430	15048	14494	14551	22755	22755					0.0837462710304635
KVEEAPALKL	10	Unmodified	_KVEEAPALKL_					0	0	0			REV__ENSG00000070444|ENST00000174618|MNT	REV__ENSG00000070444|ENST00000174618|MNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.331787109375	2	549.331882	1096.64921	0.54761	0.00030082	-0.022851	-1.2553E-05	0.52476	0.00028826	549.3317765574454	27.308	0.71273	27.308	27.118	27.831	0					22	14	2	0	0	0	0.56931	1	9879	9879		37.812	4.9991	1	96170	+		22431	13174	14495	14552	22756	22756					0.1047515819993805
KVEEIAASK	9	Unmodified	_KVEEIAASK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000401937.3_1_1:33445851-33446070:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.77984619140625	2	487.779482	973.544411	0.39614	0.00019323	0.79905	0.00038976	1.1952	0.00058299	487.77941905285223	17.177	0.096226	17.177	17.117	17.213	0					4	2	2	0	0	0	0.36135	1	4804	4804		45.022	3.5956	1	40945			22432	2377	14496	14553	22757	22757					0.05658036723366422
KVEMGGKNQP	10	Unmodified	_KVEMGGKNQP_					0	0	0			REV__ENSG00000148399|ENST00000277540|DPH7	REV__ENSG00000148399|ENST00000277540|DPH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2824096679688	2	544.281866	1086.54918	1.9807	0.001078	-0.71005	-0.00038647	1.2706	0.00069157	544.2809346296543	24.157	0.61751	24.157	23.763	24.38	0					28	12	3	0	0	0	0.056886	1	8291	8291		107.01	0.32444	1	464360	+		22433	15385	14497	14554	22758	22758					0.009365975945229366
KVENQQKK	8	Unmodified	_KVENQQKK_					0	0	0		ENSG00000196670|ENST00000502412|ZFP62;nc|ENSG00000278970|Q8NB50-3|ZFP62;nc|ENSG00000278970|Q8NB50-2|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.29071044921875	2	501.290548	1000.56654	-0.9658	-0.00048415	1.0195	0.00051108	0.053722	2.693E-05	501.29111267266074	15.274	0.51291	15.274	15.097	15.61	0					37	18	5	0	0	0	0.2678	1	3441	3441		82.305	0	1	9513400			22434	7392	14498	14555	22759	22759					0.06628261191804086
KVERSTDQ	8	Unmodified	_KVERSTDQ_					0	0	0		ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.74920654296875	2	481.748713	961.482873	3.4699	0.0016716	-3.204	-0.0015435	0.26595	0.00012812	481.7471749295067	14.595	0.10118	14.595	14.535	14.636	0					8	4	2	0	0	0	0.64144	1	3186	3186		42.396	1.8235	1	82572			22435	6195	14499	14556	22760	22760					0.0005910502410415575
KVESAIIP	8	Unmodified	_KVESAIIP_					0	0	0			REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.7605285644531	2	428.760561	855.506569	-0.93627	-0.00040143	0.47388	0.00020318	-0.46239	-0.00019825	428.76075650148397	30.986	0.19548	30.986	30.87	31.065	0					12	7	2	0	0	0	0.57802	1	10208	10208		52.299	2.2746	1	79314	+		22436	16983	14500	14557	22761	22761					0.07303570528563341
KVESKQVSI	9	Unmodified	_KVESKQVSI_					0	0	0			REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.3006591796875	2	509.300581	1016.58661	1.3407	0.00068283	-1.3244	-0.00067452	0.016309	8.3062E-06	509.3000294961051	16.442	0.11496	16.442	16.384	16.499	0					4	2	2	0	0	0	0.21263	1	4563	4563		60.118	4.6141	1	696740	+		22437	12725	14501	14558	22762	22762					0.07898012131772703
KVEYKLGFQ	9	Unmodified	_KVEYKLGFQ_					0	0	0		RYK|p.N182Ifs*5|1|0.28|ENSG00000163785|chr3:134209739-134209739|T/-|frameshift_variant;ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	RYK|p.N182Ifs*5|1|0.28|ENSG00000163785|chr3:134209739-134209739|T/-|frameshift_variant	RYK|p.N182Ifs*5|1|0.28|ENSG00000163785|chr3:134209739-134209739|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.3112182617188	2	556.310949	1110.60735	1.6925	0.00094154	-0.78869	-0.00043876	0.90378	0.00050278	556.3104103815049	32.327	0.27191	32.327	32.225	32.497	0					16	6	4	0	0	0	0.27123	1	12283	12283		54.776	12.38	1	583110			22438	5608	14502	14559	22763	22763					0.0564660251143323
KVFAENKEIQK	11	Unmodified	_KVFAENKEIQK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2538757324219	3	445.253993	1332.74015	-0.46221	-0.0002058	0.12173	5.4202E-05	-0.34048	-0.0001516	445.2540105239712	19.301	0.1646	19.301	19.196	19.36	0					9	3	3	0	0	0	0.27262	1	5952	5952		65.695	19.787	1	434620			22439	2445	14503	14560	22764	22764					0.08709002177397451
KVFAGYYTK	9	Unmodified	_KVFAGYYTK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N725Mfs*11|1|0.12|ENSG00000152952|chr3:146070757-146070757|T/-|frameshift_variant;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7925415039062	2	538.792392	1075.57023	0.86084	0.00046382	-0.47714	-0.00025708	0.38371	0.00020674	538.7922984787782	25.203	0.22682	25.203	25.11	25.337	0					11	6	3	0	0	0	0.047855	1	7550	7550		96.034	23.79	1	132000			22440	5028	14504	14561	22765	22765					0.03546930965649153
KVFAGYYTK	9	Unmodified	_KVFAGYYTK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N725Mfs*11|1|0.12|ENSG00000152952|chr3:146070757-146070757|T/-|frameshift_variant;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7928466796875	2	538.792392	1075.57023	0.24351	0.0001312	0.8193	0.00044143	1.0628	0.00057264	538.7926907714576	25.451	0.55399	25.451	25.362	25.916	0					24	11	4	0	0	0	0.019258	1	8703	8703		123.21	123.21	1	843630			22441	5028	14504	14561	22766	22766					0.03546930965649153
KVFAGYYTK	9	Unmodified	_KVFAGYYTK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N725Mfs*11|1|0.12|ENSG00000152952|chr3:146070757-146070757|T/-|frameshift_variant;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7925415039062	2	538.792392	1075.57023	-1.4699	-0.00079198	2.7826	0.0014992	1.3126	0.00070724	538.7935662076768	25.327	0.23009	25.327	25.198	25.428	0					9	5	3	0	0	0	0.36892	1	8031	8031		44.377	6.869	1	102330			22442	5028	14504	14561	22767	22767					0.03546930965649153
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.8174438476562	2	545.816399	1089.61824	1.7389	0.00094911	0.388	0.00021178	2.1269	0.0011609	545.8164608043202	16.989	0.17529	16.989	16.909	17.084	0					13	6	3	0	0	0	0.0065579	1	3953	3953		150.81	40.69	1	220040			22443	4589	14505	14562	22768	22768					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.2131042480469	3	364.213358	1089.61824	0.097145	3.5382E-05	-0.2461	-8.9633E-05	-0.14895	-5.4251E-05	364.2131904093856	17.009	0.19077	17.009	16.882	17.073	0					16	7	3	0	0	0	0.22691	1	3948	3948		76.17	31.792	1	197180			22444	4589	14505	14562	22769	22769					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.8168334960938	2	545.816399	1089.61824	1.8637	0.0010172	-1.0979	-0.00059927	0.76575	0.00041796	545.8156679440606	17.302	0.21263	17.302	17.145	17.357	0					23	5	6	0	0	0	7.3759E-06	1	4849	4849		185.33	63.151	1	2010000			22445	4589	14505	14562	22770	22770					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.21337890625	3	364.213358	1089.61824	0.47673	0.00017363	-0.46606	-0.00016975	0.010673	3.8872E-06	364.21313812609895	17.299	0.32654	17.299	17.134	17.46	0					18	8	3	0	0	0	0.14893	1	4842	4842		86.882	41.859	1	1721500			22446	4589	14505	14562	22771	22771					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.8179321289062	2	545.816399	1089.61824	4.751	0.0025932	-3.4013	-0.0018565	1.3497	0.0007367	545.8146419374866	17.064	0.1265	17.064	16.972	17.099	0					7	4	2	0	0	0	0.0046828	1	4199	4199		169.65	73.462	1	128880			22447	4589	14505	14562	22772	22772					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.21337890625	3	364.213358	1089.61824	-0.96258	-0.00035059	0.82035	0.00029878	-0.14224	-5.1804E-05	364.5479476340758	17.057	0.12229	17.057	16.993	17.115	0					6	4	2	0	0	0	0.57211	1	4195	4195		37.508	10.815	1	140060			22448	4589	14505	14562	22773	22773					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.8173217773438	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.066	1	17.066	16.566	17.566	0								0	0	0	0.33147	1	4205	4205		41.427	2.6205	1				22449	4589	14505	14562	22774	22774					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8167114257812	2	545.816399	1089.61824	0.88273	0.00048181	-0.036383	-1.9859E-05	0.84635	0.00046195	545.8163064643411	17.255	0.2197	17.255	17.115	17.334	0					14	4	4	0	0	0	0.012377	1	5065	5065		133.99	17.09	1	915560			22450	4589	14505	14562	22775	22775					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8169555664062	2	545.816399	1089.61824	1.9001	0.0010371	-1.2187	-0.0006652	0.68139	0.00037192	545.8156780613041	17.259	0.16931	17.259	17.149	17.318	0					8	3	3	0	0	0	0.31405	1	5107	5107		53.597	12.819	1	513300			22451	4589	14505	14562	22776	22776					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.8175048828125	2	545.816399	1089.61824	1.989	0.0010856	-0.65387	-0.0003569	1.3351	0.00072871	545.8161654439596	17.049	0.14262	17.049	16.978	17.12	0					9	4	3	0	0	0	0.029825	1	4163	4163		117.53	29.771	1	177610			22452	4589	14505	14562	22777	22777					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.8176879882812	2	545.816399	1089.61824	1.1169	0.00060962	0.37753	0.00020606	1.4944	0.00081568	545.8166412570909	17.075	0.17207	17.075	16.967	17.139	0					8	5	2	0	0	0	0.029825	1	4173	4173		117.53	21.335	1	189130			22453	4589	14505	14562	22778	22778					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.21319580078125	3	364.213358	1089.61824	-2.0604	-0.00075042	2.044	0.00074446	-0.016356	-5.9569E-06	364.2140704665809	17.066	0.13713	17.066	16.991	17.128	0					7	4	2	0	0	0	0.30252	1	4169	4169		66.962	15.769	1	396750			22454	4589	14505	14562	22779	22779					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.81689453125	2	545.816399	1089.61824	1.9347	0.001056	-0.9446	-0.00051558	0.99006	0.00054039	545.8158794809252	17.235	0.22048	17.235	17.073	17.293	0					14	4	4	0	0	0	0.0014809	1	4944	4944		167.93	19.89	1	2178800			22455	4589	14505	14562	22780	22780					0.07702004885709357
KVFDVRDLV	9	Unmodified	_KVFDVRDLV_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-11|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-11|TRPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8167724609375	2	545.816399	1089.61824	0.56093	0.00030617	0.24936	0.00013611	0.8103	0.00044227	545.8165343095886	17.249	0.26285	17.249	17.09	17.353	0					15	5	4	0	0	0	0.0059092	1	4909	4909		152.47	12.358	1	1500400	+		22456	13324	14506	14563	22781	22781					0.07702004885709357
KVFEKSRNK	9	Unmodified	_KVFEKSRNK_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.332763671875	2	568.332747	1134.65094	0.1475	8.3828E-05	0.25904	0.00014722	0.40653	0.00023105	568.3328241134349	12.925	0.15616	12.925	12.889	13.046	0					5	4	2	0	0	0	0.17062	1	2830	2830		65.157	11.806	1	299280			22457	5699	14507	14564	22782	22782					0.08900212008552444
KVFEKSRNK	9	Unmodified	_KVFEKSRNK_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.33349609375	2	568.332747	1134.65094	1.9563	0.0011118	-0.7137	-0.00040562	1.2426	0.00070623	568.3322679052932	12.89	0.18156	12.89	12.843	13.024	0					8	4	3	0	0	0	0.18505	1	3021	3021		63.426	6.7054	1	473060			22458	5699	14507	14564	22783	22783					0.08900212008552444
KVFFKPLE	8	Unmodified	_KVFFKPLE_					0	0	0			REV__tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1	REV__tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2982177734375	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.213	1	21.213	20.713	21.713	0								0	0	0	1.7419	1	7000	7000		31.955	0	1		+		22459	21665	14508	14565	22784	22784					0.0821242283365109
KVFFPEKDN	9	Unmodified	_KVFFPEKDN_					0	0	0			REV__TOPBP1|p.F24Lfs*7|2|0.24|ENSG00000163781|chr3:133661056-133661056|A/-|frameshift_variant	REV__TOPBP1|p.F24Lfs*7|2|0.24|ENSG00000163781|chr3:133661056-133661056|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2924194335938	2	562.292756	1122.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.091	1	14.091	13.591	14.591	0								0	0	0	0.34845	1	3427	3427		25.574	0	1		+		22460	15918	14509	14566	22785	22785					0.014577256147049411
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7848205566406	2	486.784902	971.55525	0.0061471	2.9923E-06	-0.19088	-9.2917E-05	-0.18473	-8.9925E-05	486.7848359145369	16.717	0.094517	16.717	16.656	16.75	0					5	3	2	0	0	0	0.19605	1	3862	3862		62.107	6.6032	1	154320			22461	5588	14510	14567	22786	22786					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7845764160156	2	486.784902	971.55525	0.7057	0.00034353	-1.429	-0.00069562	-0.72331	-0.0003521	486.7842532268147	17.021	0.2975	17.021	16.858	17.156	0					13	7	3	0	0	0	0.012231	1	4737	4737		136.27	51.353	1	1169600			22462	5588	14510	14567	22787	22787					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.8590393066406	3	324.859027	971.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.026	1	17.026	16.526	17.526	0								0	0	0	0.16453	1	4730	4730		72.243	16.739	1				22463	5588	14510	14567	22788	22788					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7847900390625	2	486.784902	971.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.03	1	17.03	16.53	17.53	0								0	0	0	0.010168	1	4732	4732		109.48	15.472	1				22464	5588	14510	14567	22789	22789					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.784423828125	2	486.784902	971.55525	-1.243	-0.00060509	0.84203	0.00040989	-0.40101	-0.00019521	486.7853083873008	16.774	0.2456	16.774	16.699	16.944	0					25	10	4	0	0	0	0.056004	1	4067	4067		93.143	7.7838	1	1615100			22465	5588	14510	14567	22790	22790					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.85888671875	3	324.859027	971.55525	-0.66767	-0.0002169	0.50771	0.00016494	-0.15995	-5.1963E-05	324.8592180756274	16.774	0.13736	16.774	16.699	16.836	0					13	5	3	0	0	0	0.16806	1	4068	4068		72.243	24.586	1	720010			22466	5588	14510	14567	22791	22791					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7848205566406	2	486.784902	971.55525	-0.23523	-0.00011451	-0.14635	-7.1239E-05	-0.38158	-0.00018575	486.7848101426843	16.809	0.23239	16.809	16.711	16.943	0					13	6	3	0	0	0	0.0061615	1	4053	4053		153.04	42.699	1	1148000			22467	5588	14510	14567	22792	22792					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	324.8591003417969	3	324.859027	971.55525	-0.024336	-7.9059E-06	0.057185	1.8577E-05	0.032849	1.0671E-05	324.8590917910179	16.809	0.11717	16.809	16.741	16.859	0					8	3	3	0	0	0	0.11898	1	4055	4055		91.265	58.453	1	472260			22468	5588	14510	14567	22793	22793					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.8590087890625	3	324.859027	971.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.984	1	16.984	16.484	17.484	0								0	0	0	0.061959	1	4815	4815		99.013	62.566	1				22469	5588	14510	14567	22794	22794					0.0683348388831746
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.55712890625	3	367.557348	1099.65021	0.47848	0.00017587	-0.73972	-0.00027189	-0.26124	-9.6021E-05	367.5570073405661	14.688	0.20272	14.688	14.627	14.83	0					16	8	3	0	0	0	0.078327	1	3060	3060		99.788	27.91	1	834150			22470	5588	14511	14568	22795	22795					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.83349609375	2	550.832383	1099.65021	1.525	0.00084	-0.39383	-0.00021693	1.1311	0.00062307	550.8322559233013	14.686	0.15926	14.686	14.627	14.786	0					14	6	3	0	0	0	0.007513	1	3061	3061		133.99	73.022	1	369510			22471	5588	14511	14568	22796	22796					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8328857421875	2	550.832383	1099.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.952	1	14.952	14.452	15.452	0								0	0	0	0.0060645	1	3757	3757		120.31	18.705	1				22472	5588	14511	14568	22797	22797					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.8327026367188	2	550.832383	1099.65021	0.30042	0.00016548	0.77028	0.0004243	1.0707	0.00058978	550.832853418012	14.673	0.37822	14.673	14.624	15.002	0					39	16	3	0	0	0	0.01169	1	3211	3211		104.42	104.42	1	1479000			22473	5588	14511	14568	22798	22798					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.8916320800781	3	367.557348	1099.65021	-0.99599	-0.00036608	0.83393	0.00030652	-0.16206	-5.9566E-05	367.55762444313206	14.7	0.30873	14.7	14.624	14.933	0					32	13	3	0	0	0	0.1725	1	3216	3216		82.831	26.109	1	883250			22474	5588	14511	14568	22799	22799					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8324584960938	2	550.832383	1099.65021	1.664	0.0009166	-1.6125	-0.00088819	0.051573	2.8408E-05	550.8313496903585	14.935	1.8001	14.935	14.83	16.63	0					79	36	4	0	0	0	0.0019924	1	3971	3971		154.01	45.924	1	23093000			22475	5588	14511	14568	22800	22800					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.5574951171875	3	367.557348	1099.65021	-0.10924	-4.0152E-05	0.19535	7.1803E-05	0.086111	3.1651E-05	367.5573881379247	14.724	0.31512	14.724	14.656	14.971	0					26	14	3	0	0	0	0.034592	1	3166	3166		114.86	49.393	1	840370			22476	5588	14511	14568	22801	22801					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8338012695312	2	550.832383	1099.65021	1.1516	0.00063434	0.50943	0.00028061	1.661	0.00091495	550.8326657053258	14.724	0.39785	14.724	14.656	15.054	0					31	17	3	0	0	0	0.0069915	1	3167	3167		136.99	80.268	1	1451500			22477	5588	14511	14568	22802	22802					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8336181640625	2	550.832383	1099.65021	-1.3765	-0.00075823	2.3784	0.0013101	1.0019	0.00055188	550.833749696654	14.715	0.26121	14.715	14.649	14.91	0					25	11	4	0	0	0	0.022219	1	3163	3163		102.06	70.532	1	1311000			22478	5588	14511	14568	22803	22803					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.5574645996094	3	367.557348	1099.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.908	1	14.908	14.408	15.408	0								0	0	0	0.075756	1	3815	3815		84.817	26.035	1				22479	5588	14511	14568	22804	22804					0.10437417359503343
KVFGNEIKLEK	11	Unmodified	_KVFGNEIKLEK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.59033203125	3	435.590605	1303.74999	-0.53404	-0.00023262	0.33753	0.00014703	-0.19651	-8.5597E-05	435.5905712041398	27.111	0.2192	27.111	27.002	27.221	0					10	4	3	0	0	0	0.52726	1	9680	9680		42.243	5.9249	1	267710			22480	2879	14512	14569	22805	22805					0.11026190182792561
KVFGVSTPLP	10	Unmodified	_KVFGVSTPLP_					0	0	0		ENST00000543701.5_1_12:3600779-3659332:+|nuORF	ENST00000543701.5_1_12:3600779-3659332:+|nuORF	ENST00000543701.5_1_12:3600779-3659332:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8060302734375	2	522.808042	1043.60153	1.5265	0.00079809	-4.1836	-0.0021872	-2.657	-0.0013891	522.8059453812169	15.982	0.11595	15.982	15.898	16.014	0					8	5	2	0	0	0	0.22198	1	3568	3568		76.774	14.667	1	52783			22481	10561	14513	14570	22806	22806					0.08147503999771288
KVFIDRAKK	9	Unmodified	_KVFIDRAKK_					0	0	0		nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145451|ENST00000274093|GLRA3	nc|ENSG00000145451|O75311-2|GLRA3	nc|ENSG00000145451|O75311-2|GLRA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.9011535644531	3	368.901114	1103.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.334	1	24.334	23.834	24.834	0								0	0	0	0.18645	1	8380	8380		52.937	1.4089	1				22482	4673	14514	14571	22807	22807					0.13381990393577325
KVFKDLCVL	9	Unmodified	_KVFKDLCVL_					0	0	0			REV__ENSG00000012983|ENST00000682126|MAP4K5	REV__ENSG00000012983|ENST00000682126|MAP4K5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.8114013671875	2	532.81227	1063.60999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.474	1	10.474	9.9742	10.974	0								0	0	0	0.22284	1	2002	2002		47.657	3.2801	1		+		22483	12913	14515	14572	22808	22808					0.08072734644724733
KVFKQIFSK	9	Unmodified	_KVFKQIFSK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.56561279296875	3	375.565732	1123.67537	0.72403	0.00027192	-0.784	-0.00029444	-0.059972	-2.2523E-05	375.56528985550136	24.574	0.40552	24.574	24.463	24.869	0					21	8	3	0	0	0	0.13726	1	8505	8505		70.816	29.39	1	651140			22484	3013	14516	14573	22809	22809					0.11847472162094164
KVFLEVQP	8	Unmodified	_KVFLEVQP_					0	0	0			REV__ENSG00000213719|ENST00000375784|CLIC1	REV__ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2976989746094	2	480.28166	958.548768	2.3173	0.001113	2.0772	0.00099763	4.3945	0.0021106	480.28262178284325	13.418	0.33049	13.418	13.226	13.557	0					11	7	3	0	0	0	0.60719	1	3099	3099		47.916	1.9636	1	868210	+		22485	17566	14517	14574	22810	22810					0.06783545936946211
KVFLGKVNV	9	Unmodified	_KVFLGKVNV_					0	0	0			REV__nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	REV__nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.31890869140625	2	502.318577	1002.6226	0.13886	6.9749E-05	-0.51236	-0.00025737	-0.37351	-0.00018762	502.3185347395362	31.837	0.15651	31.837	31.778	31.935	0					9	5	2	0	0	0	0.44593	1	11005	11005		30.504	0.18592	1	77149	+		22486	15524	14518	14575	22811	22811					0.12139514099283133
KVFMENLMKK	10	2 Oxidation (M)	_KVFM(Oxidation (M))ENLM(Oxidation (M))KK_		KVFM(1)ENLM(1)KK		KVFM(46)ENLM(46)KK	0	0	2		CBL|p.R116K|1|0.59|ENSG00000110395|chr11:119232599-119232599|G/A|missense_variant	CBL|p.R116K|1|0.59|ENSG00000110395|chr11:119232599-119232599|G/A|missense_variant	CBL|p.R116K|1|0.59|ENSG00000110395|chr11:119232599-119232599|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.8980407714844	3	433.898165	1298.67266	0.12199	5.2931E-05	-0.21571	-9.3597E-05	-0.093723	-4.0666E-05	433.898062179276	16.384	0.40443	16.384	16.286	16.691	0					19	9	3	0	0	0	0.48965	1	4418	4418		46.457	6.3986	1	875310			22487	387	14519	14576	22812	22812		20;21			0.035275126506121524
KVFNKVPS	8	Unmodified	_KVFNKVPS_					0	0	0			REV__ENST00000544861.5_1_12:104376657-104376945:+|nuORF	REV__ENST00000544861.5_1_12:104376657-104376945:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7736511230469	2	459.774003	917.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.056	1	18.056	17.556	18.556	0								0	0	0	1.7419	1	4636	4636		29.15	0	1		+		22488	20159	14520	14577	22813	22813					0.07138679139745818
KVFNNGTRAQ	10	Unmodified	_KVFNNGTRAQ_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.8020629882812	2	567.804354	1133.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.386	1	25.386	24.886	25.886	0								0	0	0	0.40797	1	7635	7635		28.081	1.3318	1		+		22489	14146	14521	14578	22814	22814					0.03270164452055724
KVFNQPKAK	9	Unmodified	_KVFNQPKAK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.88189697265625	3	353.881831	1058.62366	0.3169	0.00011214	-0.46496	-0.00016454	-0.14806	-5.2397E-05	353.8817299881014	15.937	0.31183	15.937	15.834	16.145	0					14	6	3	0	0	0	0.17854	1	4444	4444		90.601	37.664	1	827290			22490	6541	14522	14579	22815	22815					0.09669728468156791
KVFNQPKAK	9	Unmodified	_KVFNQPKAK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.8817443847656	3	353.881831	1058.62366	-0.052346	-1.8524E-05	0.13035	4.613E-05	0.078007	2.7605E-05	353.8818598056858	15.905	0.26567	15.905	15.849	16.114	0					8	5	2	0	0	0	0.13519	1	4309	4309		87.696	41.24	1	426960			22491	6541	14522	14579	22816	22816					0.09669728468156791
KVFPERSGSG	10	Unmodified	_KVFPERSGSG_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8;ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2822875976562	2	532.28018	1062.54581	0.37304	0.00019856	3.9547	0.002105	4.3278	0.0023036	532.2824089196217	22.767	0.09741	22.767	22.684	22.781	0					7	3	3	0	0	0	0.59277	1	6484	6484		35.152	0.97948	1	87176			22492	5142	14523	14580	22817	22817					0.01703670812139535
KVFRGNKVK	9	Unmodified	_KVFRGNKVK_					0	0	0		nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;ENST00000526226.1_1_11:49207215-49208312:-|nuORF;FOLH1|p.S338Yfs*13|1|0.37|ENSG00000086205|chr11:49175866-49175867|AA/-|frameshift_variant;FOLH1|p.S501Vfs*12|1|0.15|ENSG00000086205|chr11:49157983-49157983|T/-|frameshift_variant;FOLH1|p.K499Ifs*16|1|0.06|ENSG00000086205|chr11:49157988-49157989|-/GAAAA|frameshift_variant;FOLH1|p.S501Kfs*20|1|0.27|ENSG00000086205|chr11:49157982-49157983|-/T|frameshift_variant;nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;FOLH1|p.N216Mfs*24|1|0.25|ENSG00000086205|chr11:49185848-49185848|T/-|frameshift_variant	nc|ENSG00000086205|Q04609-9|FOLH1	nc|ENSG00000086205|Q04609-9|FOLH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.89703369140625	3	359.229342	1074.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.692	1	22.692	22.192	23.192	0								0	0	0	0.30009	1	6720	6720		35.152	1.2304	1				22493	11443	14524	14581	22818	22818					0.13185123596394988
KVFRRNTK	8	Unmodified	_KVFRRNTK_					0	0	0			REV__ENST00000468692.1_1_1:111730229-111731929:-|nuORF	REV__ENST00000468692.1_1_1:111730229-111731929:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.82421875	2	524.82235	1047.63015	3.4384	0.0018046	-0.42644	-0.00022381	3.012	0.0015808	524.8220872865284	38.518	0.39505	38.518	38.382	38.778	0					26	8	4	0	0	0	0.51384	1	15137	15137		58.782	58.782	1	6142800	+		22494	15841	14525	14582	22819	22819					0.10823666419537403
KVFSDLQA	8	Unmodified	_KVFSDLQA_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2480773925781	2	454.247818	906.481082	4.0112	0.0018221	-2.1766	-0.0009887	1.8346	0.00083336	454.246929821201	27.995	0.20735	27.995	27.883	28.09	0					11	7	2	0	0	0	0.51931	1	8977	8977		58.23	10.27	1	103970	+		22495	16499	14526	14583	22820	22820					0.024100960061218757
KVFTVSNIK	9	Unmodified	_KVFTVSNIK_					0	0	0		nc|ENSG00000185518|Q7L1I2-2|SV2B;SV2B|p.G586Wfs*4|2|0.27|ENSG00000185518|chr15:91289561-91289562|-/T|frameshift_variant;ENSG00000185518|ENST00000394232|SV2B;SV2B|p.E332D|1|0.22|ENSG00000185518|chr15:91260397-91260397|G/T|missense_variant	nc|ENSG00000185518|Q7L1I2-2|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.3138427734375	2	518.313492	1034.61243	1.0672	0.00055316	-0.2411	-0.00012497	0.82612	0.00042819	518.313371010049	24.419	0.16709	24.419	24.31	24.477	0					8	3	3	0	0	0	0.38666	1	8558	8558		42.864	2.0861	1	261450			22496	7085	14527	14584	22821	22821					0.09650906374031365
KVFTYAKNK	9	Unmodified	_KVFTYAKNK_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.8814697265625	3	366.88172	1097.62333	0.27176	9.9705E-05	0.15451	5.6689E-05	0.42628	0.00015639	367.21628699415186	17.413	0.14992	17.413	17.367	17.517	0					5	3	2	0	0	0	0.14578	1	5178	5178		68.846	32.528	1	92322			22497	3338	14528	14585	22822	22822					0.07842308748308824
KVGAHIIQ	8	Unmodified	_KVGAHIIQ_					0	0	0			REV__ENSG00000147789|ENST00000532777|ZNF7	REV__ENSG00000147789|ENST00000532777|ZNF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.26611328125	2	433.266345	864.518136	-0.76754	-0.00033255	0.10925	4.7333E-05	-0.65829	-0.00028522	433.26641003274284	23.83	0.23293	23.83	23.734	23.967	0					18	8	3	0	0	0	0.49887	1	7205	7205		60.294	7.9948	1	639390	+		22498	15364	14529	14586	22823	22823					0.08045812342561476
KVGDNLRR	8	Unmodified	_KVGDNLRR_					0	0	0		tr|U7STW2|U7STW2_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01213PE=3SV=1	tr|U7STW2|U7STW2_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01213PE=3SV=1	tr|U7STW2|U7STW2_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01213PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2829284667969	2	479.283057	956.551562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.91	1	18.91	18.41	19.41	0								0	0	0	1.7419	1	5027	5027		55.504	6.0627	1				22499	22796	14530	14587	22824	22824					0.0715481411446035
KVGEFSGANK	10	Unmodified	_KVGEFSGANK_					0	0	0		nc|ENSG00000136810|P10599-2|TXN;ENST00000487892.1_1_9:113006439-113007258:-|nuORF;ENST00000510190.1_1_4:77880016-77880280:-|nuORF;ENSG00000136810|ENST00000374517|TXN	nc|ENSG00000136810|P10599-2|TXN	nc|ENSG00000136810|P10599-2|TXN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.774658203125	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.163	1	18.163	17.663	18.663	0								0	0	0	0.23484	1	5262	5262		59.931	10.489	1				22500	4107	14531	14588	22825	22825					0.018562684378366612
KVGEFSGANK	10	Unmodified	_KVGEFSGANK_					0	0	0		nc|ENSG00000136810|P10599-2|TXN;ENST00000487892.1_1_9:113006439-113007258:-|nuORF;ENST00000510190.1_1_4:77880016-77880280:-|nuORF;ENSG00000136810|ENST00000374517|TXN	nc|ENSG00000136810|P10599-2|TXN	nc|ENSG00000136810|P10599-2|TXN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7747802734375	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.856	1	17.856	17.356	18.356	0								0	0	0	0.18965	1	4559	4559		65.465	14.13	1				22501	4107	14531	14588	22826	22826					0.018562684378366612
KVGEVIVTK	9	Unmodified	_KVGEVIVTK_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;ENST00000420325.1_1_13:38567761-38567950:-|nuORF;ENST00000388967.3_1_3:36809128-36809431:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.8079833984375	2	486.808042	971.601532	0.3777	0.00018387	-0.63442	-0.00030884	-0.25672	-0.00012497	486.80781842982174	21.238	0.23298	21.238	21.147	21.38	0					9	5	2	0	0	0	0.0040239	1	6728	6728		162.64	61.383	1	7364700			22502	4612	14532	14589	22827	22827					0.11459503999753906
KVGEVIVTK	9	Unmodified	_KVGEVIVTK_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;ENST00000420325.1_1_13:38567761-38567950:-|nuORF;ENST00000388967.3_1_3:36809128-36809431:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.8076171875	2	486.808042	971.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.997	1	20.997	20.497	21.497	0								0	0	0	0.3063	1	5957	5957		33.922	2.3918	1				22503	4612	14532	14589	22828	22828					0.11459503999753906
KVGFSPAGL	9	Unmodified	_KVGFSPAGL_					0	0	0		ENST00000569862.5_1_16:67865068-67866179:-|nuORF	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2520446777344	2	438.252903	874.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.127	1	36.127	35.627	36.627	0								0	0	0	0.3304	1	13602	13602		29.15	0	1				22504	10787	14533	14590	22829	22829					0.048987037313850124
KVGKLTDIT	9	Unmodified	_KVGKLTDIT_					0	0	0			REV__nc|ENSG00000163975|P08582-2|MELTF	REV__nc|ENSG00000163975|P08582-2|MELTF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7975769042969	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.218	1	19.218	18.718	19.718	0								0	0	0	0.29774	1	5175	5175		35.618	0.41757	1		+		22505	15944	14534	14591	22830	22830					0.0929491362007866
KVGNEILTK	9	Unmodified	_KVGNEILTK_					0	0	0			REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.3025817871094	2	501.303124	1000.5917	-0.57815	-0.00028983	-0.2164	-0.00010848	-0.79455	-0.00039831	501.3030933199215	23.586	0.16663	23.586	23.479	23.646	0					5	3	2	0	0	0	0.5879	1	8162	8162		23.042	3.0457	1	72256	+		22506	22106	14535	14592	22831	22831					0.09142315994381534
KVGQPPPPPMA	11	Unmodified	_KVGQPPPPPMA_					0	0	0			REV__ENST00000523986.5_1_8:117864120-117864294:-|nuORF	REV__ENST00000523986.5_1_8:117864120-117864294:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.8037109375	2	559.804977	1117.5954	1.0639	0.00059556	-3.0204	-0.0016908	-1.9565	-0.0010953	560.3047929284386	31.167	0.25062	31.167	31.105	31.356	0					10	7	2	0	0	0	0.64562	1	10696	10696		32.812	2.3088	1	88706	+		22507	16002	14536	14593	22832	22832					0.04130662496595505
KVGRDVVQK	9	Unmodified	_KVGRDVVQK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.81396484375	2	514.81419	1027.61383	1.1752	0.00060503	-1.1915	-0.00061343	-0.016316	-8.3999E-06	514.8136736929181	13.306	1.7236	13.306	13.151	14.875	0					86	44	5	0	0	0	0.063171	1	2975	2975		90.601	1.572	1	37230000			22508	3852	14537	14594	22833	22833					0.1011254046279646
KVGRDVVQK	9	Unmodified	_KVGRDVVQK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.8150024414062	2	514.81419	1027.61383	0.74268	0.00038234	-0.96894	-0.00049882	-0.22626	-0.00011648	514.8137774186528	13.305	1.2805	13.305	13.112	14.393	0					49	27	5	0	0	0	0.22837	1	3342	3342		58.23	4.8785	1	35394000			22509	3852	14537	14594	22834	22834					0.1011254046279646
KVGRDVVQK	9	Unmodified	_KVGRDVVQK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.8137817382812	2	514.81419	1027.61383	0.13994	7.2045E-05	-0.66295	-0.0003413	-0.52301	-0.00026925	514.8139567405223	13.266	1.9097	13.266	13.018	14.928	0					82	39	5	0	0	0	0.21263	1	3176	3176		60.118	0	1	36257000			22510	3852	14537	14594	22835	22835					0.1011254046279646
KVHGSLAR	8	Unmodified	_KVHGSLAR_					0	0	0		ENSG00000149806|ENST00000529639|FAU;ENST00000531357.1_1_11:64888296-64888581:-|nuORF	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2613830566406	2	434.261594	866.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.972	1	13.972	13.472	14.472	0								0	0	0	1.7419	1	3303	3303		49.442	3.4896	1				22511	4908	14538	14595	22836	22836					0.0700404405702102
KVHNYCNMKK	10	Unmodified	_KVHNYCNMKK_					0	0	0		nc|ENSG00000183242|Q06250|WT1-AS;ENST00000395900.1_1_11:32460427-32460703:+|nuORF	nc|ENSG00000183242|Q06250|WT1-AS	nc|ENSG00000183242|Q06250|WT1-AS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	632.8196411132812	2	632.818092	1263.62163	1.0761	0.00068097	1.1714	0.00074126	2.2475	0.0014222	632.8188858756156	37.685	0.29486	37.685	37.588	37.882	0					24	9	3	0	0	0	0.60281	1	14287	14287		21.96	0	1	332290			22512	9197	14539	14596	22837	22837					0.0003660839638541802
KVHVEPKKRP	10	Unmodified	_KVHVEPKKRP_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|20|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|20|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|20|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	609.377197265625	2	609.377489	1216.74043	-1.9604	-0.0011946	0.90139	0.00054929	-1.059	-0.00064533	609.3780317113609	19.698	0.1764	19.698	19.604	19.781	0					10	4	3	0	0	0	0.34667	1	5388	5388		62.107	62.107	1	459770			22513	11295	14540	14597	22838	22838					0.14072466687935048
KVICPILKI	9	Unmodified	_KVICPILKI_					0	0	0			REV__tr|U7SRQ3|U7SRQ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01623PE=4SV=1	REV__tr|U7SRQ3|U7SRQ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01623PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.8429565429688	2	513.840831	1025.66711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.835	1	18.835	18.335	19.335	0								0	0	0	0.11736	1	5581	5581		42.396	0	1		+		22514	21857	14541	14598	22839	22839					0.15530201921092157
KVIDPVTGK	9	Unmodified	_KVIDPVTGK_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7932434082031	2	478.792392	955.570232	1.0258	0.00049114	-0.47748	-0.00022862	0.5483	0.00026252	478.79228699121313	21.611	0.26801	21.611	21.469	21.737	0					12	9	2	0	0	0	0.39283	1	5963	5963		42.338	4.8299	1	49845			22515	7924	14542	14599	22840	22840					0.09066930965661868
KVIDPVTGK	9	Unmodified	_KVIDPVTGK_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.79254150390625	2	478.792392	955.570232	0.49644	0.00023769	-0.62599	-0.00029972	-0.12955	-6.2027E-05	478.7920585403689	21.918	0.31169	21.918	21.75	22.061	0					20	7	4	0	0	0	0.040209	1	7015	7015		99.013	11.259	1	398310			22516	7924	14542	14599	22841	22841					0.09066930965661868
KVIEDATAM	9	Unmodified	_KVIEDATAM_					0	0	0			REV__ENST00000524953.1_1_11:61110045-61110363:+|nuORF	REV__ENST00000524953.1_1_11:61110045-61110363:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2521057128906	2	489.252243	976.489932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.452	1	27.452	26.952	27.952	0								0	0	0	0.23459	1	8983	8983		45.952	7.1458	1		+		22517	15422	14543	14600	22842	22842					0.0007470158028581864
KVIEPKDIHAK	11	Unmodified	_KVIEPKDIHAK_					0	0	0		nc|ENSG00000143416|Q13228-2|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000474352.5_1_1:151338696-151341653:-|nuORF;ENST00000492643.5_1_1:151339689-151341653:-|nuORF;ENST00000455839.5_1_1:151339298-151341653:-|nuORF	nc|ENSG00000143416|Q13228-2|SELENBP1	nc|ENSG00000143416|Q13228-2|SELENBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.5906066894531	3	426.590717	1276.75032	-0.69624	-0.00029701	0.31456	0.00013419	-0.38169	-0.00016282	426.59097109176224	18.637	0.43349	18.637	18.369	18.803	0					29	10	4	0	0	0	0.076329	1	5479	5479		95.483	41.886	1	647840			22518	4553	14544	14601	22843	22843					0.12301609902647215
KVIGIAIMK	9	Unmodified	_KVIGIAIMK_					0	0	0		ENST00000460072.5_1_2:39984490-39995716:-|nuORF;nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENSG00000138050|ENST00000505747|THUMPD2	ENST00000460072.5_1_2:39984490-39995716:-|nuORF	ENST00000460072.5_1_2:39984490-39995716:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.8170471191406	2	486.817356	971.620159	-0.08505	-4.1404E-05	-0.93431	-0.00045484	-1.0194	-0.00049624	486.8170701625086	32.055	0.19688	32.055	31.961	32.157	0					9	4	3	0	0	0	0.16002	1	12158	12158		66.429	0.6261	1	227890			22519	4219	14545	14602	22844	22844					0.13321342369943068
KVIGIAIMK	9	Unmodified	_KVIGIAIMK_					0	0	0		ENST00000460072.5_1_2:39984490-39995716:-|nuORF;nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENSG00000138050|ENST00000505747|THUMPD2	ENST00000460072.5_1_2:39984490-39995716:-|nuORF	ENST00000460072.5_1_2:39984490-39995716:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.8172912597656	2	486.817356	971.620159	-0.54455	-0.0002651	-0.0037044	-1.8034E-06	-0.54825	-0.0002669	486.81756690677776	32.025	0.26788	32.025	31.918	32.186	0					12	5	3	0	0	0	0.055856	1	12044	12044		93.195	21.9	1	403390			22520	4219	14545	14602	22845	22845					0.13321342369943068
KVIGVNLIQ	9	Unmodified	_KVIGVNLIQ_					0	0	0		ENST00000526677.1_1_11:59948933-59950490:-|nuORF	ENST00000526677.1_1_11:59948933-59950490:-|nuORF	ENST00000526677.1_1_11:59948933-59950490:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.31591796875	2	492.316035	982.617516	-0.057097	-2.811E-05	0.06876	3.3852E-05	0.011664	5.7421E-06	492.31617523503996	33.582	0.79304	33.582	33.448	34.241	0					62	19	6	0	0	0	0.26904	1	13038	13038		53.351	0	1	28633000			22521	10380	14546	14603	22846	22846					0.12551210236654242
KVIHHHGACV	10	Unmodified	_KVIHHHGACV_					0	0	0			REV__ENST00000554432.1_1_14:104205014-104205387:-|nuORF	REV__ENST00000554432.1_1_14:104205014-104205387:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.7925415039062	2	550.792735	1099.57092	1.152	0.0006345	-1.4011	-0.00077171	-0.24911	-0.00013721	550.7919082145308	26.979	0.19901	26.979	26.903	27.102	0					7	5	2	0	0	0	0.40673	1	8777	8777		55.504	14.932	1	100760	+		22522	13395	14547	14604	22847	22847					0.02511447133724687
KVIKDLLNC	9	Unmodified	_KVIKDLLNC_					0	0	0			REV__ASB17|p.N177Tfs*7|1|0.18|ENSG00000154007|chr1:75922231-75922231|T/-|frameshift_variant	REV__ASB17|p.N177Tfs*7|1|0.18|ENSG00000154007|chr1:75922231-75922231|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.306396484375	2	523.307352	1044.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.732	1	26.732	26.232	27.232	0								0	0	0	0.27025	1	9604	9604		40.778	0	1		+		22523	12232	14548	14605	22848	22848					0.07963546639325614
KVIKKMEAE	9	Unmodified	_KVIKKMEAE_					0	0	0			REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3126220703125	2	538.312635	1074.61072	-1.4503	-0.0007807	-0.32829	-0.00017672	-1.7786	-0.00095743	538.3124063791477	39.1	0.093239	39.1	39.049	39.143	0					7	4	2	0	0	0	0.2873	1	13949	13949		51.335	3.6781	1	63823	+		22524	21991	14549	14606	22849	22849					0.07639529293783198
KVIKMLGAI	9	Unmodified	_KVIKMLGAI_					0	0	0			REV__nc|ENSG00000151500|Q9P016-2|THYN1	REV__nc|ENSG00000151500|Q9P016-2|THYN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.81707763671875	2	486.817356	971.620159	0.81888	0.00039864	-1.3323	-0.00064858	-0.51342	-0.00024994	486.8167118104312	32.008	0.36817	32.008	31.902	32.27	0					15	7	3	0	0	0	0.37197	1	12063	12063		44.117	10.601	1	504000	+		22525	15478	14550	14607	22850	22850					0.13321342369965805
KVINALSTD	9	Unmodified	_KVINALSTD_					0	0	0			REV__chr17:81953267-81953858|204|15.17|0.24|5.96|-|1|TE_info:AluSq2,AluSq2_dup53237,Alu,SINE,donor,-,81953858,81954077|NOTUM,None|3	REV__chr17:81953267-81953858|204|15.17|0.24|5.96|-|1|TE_info:AluSq2,AluSq2_dup53237,Alu,SINE,donor,-,81953858,81954077|NOTUM,None|3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7713623046875	2	480.771657	959.528761	0.42508	0.00020437	-1.049	-0.00050434	-0.62394	-0.00029997	480.7711993687646	25.311	0.23277	25.311	25.209	25.442	0					11	5	3	0	0	0	0.16002	1	8642	8642		66.429	7.6473	1	311430	+		22526	12478	14551	14608	22851	22851					0.04737750206322744
KVINKKEE	8	Unmodified	_KVINKKEE_					0	0	0			REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.295166015625	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.566	1	20.566	20.066	21.066	0								0	0	0	1.7419	1	6685	6685		76.774	7.9873	1		+		22527	14715	14552	14609	22852	22852					0.08222029477326487
KVIRNMKIIFC	11	Unmodified	_KVIRNMKIIFC_					0	0	0			REV__ATP4B|p.Y241Lfs*18|1|0.07|ENSG00000186009|chr13:113649530-113649531|-/A|frameshift_variant	REV__ATP4B|p.Y241Lfs*18|1|0.07|ENSG00000186009|chr13:113649530-113649531|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	682.8967895507812	2	682.898885	1363.78322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.608	1	41.608	41.108	42.108	0								0	0	0	0.45674	1	13320	13320		19.997	3.2794	1		+		22528	12257	14553	14610	22853	22853					0.11587777429508606
KVKDGAKP	8	Unmodified	_KVKDGAKP_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.L1048*|1|0.18|ENSG00000133858|chr12:71632189-71632189|A/-|frameshift_variant;ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant;ZFC3H1|p.K385Nfs*9|5|0.36|ENSG00000133858|chr12:71645001-71645001|T/-|frameshift_variant;ZFC3H1|p.E390Nfs*4|1|0.39|ENSG00000133858|chr12:71644989-71644989|T/-|frameshift_variant;ZFC3H1|p.V423Sfs*2|1|0.32|ENSG00000133858|chr12:71644889-71644890|-/T|frameshift_variant;nc|ENSG00000133858|O60293-4|ZFC3H1	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.7585144042969	2	421.758352	841.502152	-0.033142	-1.3978E-05	-0.095635	-4.0335E-05	-0.12878	-5.4313E-05	421.7583488861653	13.675	0.26655	13.675	13.52	13.786	0					29	14	3	0	0	0	0.3961	1	2758	2758		71.296	7.0884	1	410410			22529	3875	14554	14611	22854	22854					0.07506106105665822
KVKDTTFR	8	Unmodified	_KVKDTTFR_					0	0	0		ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7875061035156	2	497.787641	993.56073	-1.3201	-0.00065711	0.80983	0.00040312	-0.51024	-0.00025399	497.7880743641592	29.354	0.40467	29.354	29.27	29.675	0					30	15	3	0	0	0	0.5676	1	9534	9534		53.351	7.3995	1	882940			22530	5222	14555	14612	22855	22855					0.06369162680130103
KVKEERTAG	9	Unmodified	_KVKEERTAG_					0	0	0			REV__nc|ENSG00000007174|Q9NYC9-3|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-3|DNAH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2894592285156	2	509.288005	1016.56146	0.98491	0.0005016	-0.22788	-0.00011606	0.75703	0.00038554	509.287984674922	15.1	0.20371	15.1	15.012	15.215	0					13	8	2	0	0	0	0.25761	1	3220	3220		66.429	5.4573	1	68333	+		22531	12868	14556	14613	22856	22856					0.05383957329195255
KVKFINEQ	8	Unmodified	_KVKFINEQ_					0	0	0		DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant;DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant	DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant	DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2918701171875	2	503.290017	1004.56548	3.5973	0.0018105	-0.80849	-0.0004069	2.7889	0.0014036	503.289698136503	18.688	0.18649	18.688	18.598	18.785	0					14	6	3	0	0	0	0.24915	1	4925	4925		102.77	1.1726	1	909800			22532	821	14557	14614	22857	22857					0.06338046822895649
KVKGWLLPE	9	Unmodified	_KVKGWLLPE_					0	0	0		nc|ENSG00000143416|Q13228-2|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000427977.6_1_1:151337413-151341586:-|nuORF;ENST00000455397.5_1_1:151337021-151341586:-|nuORF;ENST00000443708.5_1_1:151337021-151341586:-|nuORF;nc|ENSG00000143416|Q13228-3|SELENBP1;ENST00000474352.5_1_1:151337855-151338307:-|nuORF	nc|ENSG00000143416|Q13228-2|SELENBP1	nc|ENSG00000143416|Q13228-2|SELENBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.328125	2	535.32386	1068.63317	3.3668	0.0018023	4.1208	0.002206	7.4877	0.0040083	535.3259738060082	13.002	0.24125	13.002	12.902	13.143	0					9	5	2	0	0	0	0.03984	1	2921	2921		99.375	6.2317	1	552280			22533	4553	14558	14615	22858	22858					0.10159496753703934
KVKHFMKQH	9	Oxidation (M)	_KVKHFM(Oxidation (M))KQH_		KVKHFM(1)KQH		KVKHFM(57)KQH	0	0	1		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;ACAD11|p.W537Mfs*57|1|0.25|ENSG00000240303|chr3:132603241-132603242|-/T|frameshift_variant;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.2226257324219	3	400.22197	1197.64408	0.80607	0.00032261	0.86132	0.00034472	1.6674	0.00066733	400.2222458129093	16.761	0.24892	16.761	16.664	16.913	0					10	5	3	0	0	0	0.24095	1	4867	4867		56.721	18.91	1	1524100			22534	31	14559	14616	22859	22859		0			0.05316575856340933
KVKKEAAP	8	Unmodified	_KVKKEAAP_					0	0	0			REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.7735900878906	2	435.774003	869.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.29	1	15.29	14.79	15.79	0								0	0	0	1.7419	1	4150	4150		60.294	12.378	1		+		22535	22076	14560	14617	22860	22860					0.09346679139741809
KVKKHETQ	8	Unmodified	_KVKKHETQ_					0	0	0		nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF	nc|ENSG00000147526|O75410-5|TACC1	nc|ENSG00000147526|O75410-5|TACC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.29266357421875	2	499.293091	996.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.554	1	12.554	12.054	13.054	0								0	0	0	1.7419	1	2667	2667		53.351	2.016	1				22536	4787	14561	14618	22861	22861					0.07320565054419603
KVKLDRSQ	8	Unmodified	_KVKLDRSQ_					0	0	0			REV__ENST00000472789.1_1_7:150936247-150937287:-|nuORF	REV__ENST00000472789.1_1_7:150936247-150937287:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.29278564453125	2	487.293091	972.571629	2.5519	0.0012435	-3.0446	-0.0014836	-0.49273	-0.0002401	487.29152999324043	16.174	0.17048	16.174	16.063	16.234	0					5	3	2	0	0	0	0.46013	1	4439	4439		64.207	2.516	1	397320	+		22537	19497	14562	14619	22862	22862					0.08424565054417599
KVKLYKDN	8	Unmodified	_KVKLYKDN_					0	0	0		HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1;HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.53432	1006.58113	0.24141	8.1243E-05	-0.34792	-0.00011709	-0.10651	-3.5843E-05	336.53416805376844	24.988	1.1898	24.988	24.334	25.524	0					60	37	2	0	0	0	0.75243	1	7676	7676		21.96	0	1	155190			22538	2161	14563	14620	22863	22863					0.0781033333993264
KVKSKLDAE	9	Unmodified	_KVKSKLDAE_					0	0	0		CTNNA3|p.K856Nfs*3|1|0.09|ENSG00000183230|chr10:65920450-65920450|T/-|frameshift_variant;CTNNA3|p.P857Tfs*4|2|0.35|ENSG00000183230|chr10:65920449-65920450|-/T|frameshift_variant;ENSG00000183230|ENST00000433211|CTNNA3;ENST00000373735.1_1_10:67680090-67838726:-|nuORF	CTNNA3|p.K856Nfs*3|1|0.09|ENSG00000183230|chr10:65920450-65920450|T/-|frameshift_variant	CTNNA3|p.K856Nfs*3|1|0.09|ENSG00000183230|chr10:65920450-65920450|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.8694763183594	3	339.86948	1016.58661	0.51158	0.00017387	-0.5494	-0.00018672	-0.037824	-1.2855E-05	339.8692836563396	16.489	0.13794	16.489	16.438	16.576	0					5	3	2	0	0	0	0.5654	1	4488	4488		25.574	1.0549	1	474120			22539	708	14564	14621	22864	22864					0.07898012131749965
KVKTLLLNAA	10	Unmodified	_KVKTLLLNAA_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.849853515625	2	535.850242	1069.68593	0.29161	0.00015626	-0.86911	-0.00046571	-0.5775	-0.00030945	535.8498845026098	27.838	0.16703	27.838	27.73	27.897	0					5	3	2	0	0	0	0.60147	1	10144	10144		36.447	9.7538	1	132510			22540	1576	14565	14622	22865	22865					0.1538745481652768
KVKTPSFGIS	10	Unmodified	_KVKTPSFGIS_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.3120727539062	2	532.310949	1062.60735	1.1558	0.00061523	0.42631	0.00022693	1.5821	0.00084216	532.3110586744466	24.538	0.14234	24.538	24.467	24.609	0					6	3	2	0	0	0	0.41335	1	7665	7665		54.776	1.4249	1	76159			22541	3401	14566	14623	22866	22866					0.0785460251142922
KVKVSDPR	8	Unmodified	_KVKVSDPR_					0	0	0		ENST00000473822.5_1_1:111746941-111747067:-|nuORF	ENST00000473822.5_1_1:111746941-111747067:-|nuORF	ENST00000473822.5_1_1:111746941-111747067:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7820739746094	2	464.782359	927.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.17	1	17.17	16.67	17.67	0								0	0	0	1.7419	1	5052	5052		71.296	10.324	1				22542	9881	14567	14624	22867	22867					0.08349180025697933
KVKYLSGDI	9	Unmodified	_KVKYLSGDI_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.79754638671875	2	511.797675	1021.5808	0.46518	0.00023808	-0.65907	-0.00033731	-0.19389	-9.9233E-05	511.7972687134538	22.619	0.35911	22.619	22.318	22.677	0					18	7	3	0	0	0	0.30951	1	7626	7626		49.442	1.7842	1	223490			22543	3331	14568	14625	22868	22868					0.07086913620082669
KVLALQARK	9	Unmodified	_KVLALQARK_					0	0	0		ENST00000513367.1_1_6:35855779-35888866:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;ENSG00000096063|ENST00000373825|SRPK1;ENST00000507909.1_1_6:35888243-35888866:-|nuORF;ENST00000510290.5_1_6:35838717-35888866:-|nuORF;ENST00000423325.6_1_6:35858793-35888866:-|nuORF	ENST00000513367.1_1_6:35855779-35888866:-|nuORF	ENST00000513367.1_1_6:35855779-35888866:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.8975830078125	3	342.897593	1025.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.783	1	18.783	18.283	19.283	0								0	0	0	0.30009	1	5688	5688		35.152	0	1				22544	1914	14569	14626	22869	22869					0.1591400773913847
KVLDAIIQEK	10	Unmodified	_KVLDAIIQEK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8499145507812	2	578.850438	1155.68632	-0.40807	-0.00023621	-0.029378	-1.7006E-05	-0.43744	-0.00025321	578.8501785142705	31.788	0.26037	31.788	31.685	31.945	0					13	5	4	0	0	0	0.21778	1	12009	12009		77.288	21.567	1	540310			22545	2826	14570	14627	22870	22870					0.11470829745667288
KVLDKLSQ	8	Unmodified	_KVLDKLSQ_					0	0	0			REV__HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant	REV__HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.78411865234375	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.852	1	19.852	19.352	20.352	0								0	0	0	1.7419	1	6063	6063		65.465	5.3471	1		+		22546	13497	14571	14628	22871	22871					0.08698644448600135
KVLDTPHHSK	10	Unmodified	_KVLDTPHHSK_					0	0	0		ENST00000540664.5_1_10:98714714-98714867:+|nuORF	ENST00000540664.5_1_10:98714714-98714867:+|nuORF	ENST00000540664.5_1_10:98714714-98714867:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.88409423828125	3	387.884012	1160.63021	0.86078	0.00033388	-0.71563	-0.00027758	0.14515	5.6301E-05	387.8838050524192	14.738	0.17406	14.738	14.616	14.79	0					7	4	2	0	0	0	0.61002	1	3668	3668		33.039	5.1572	1	98704			22547	10539	14572	14629	22872	22872					0.056316216288678334
KVLDTPHHSK	10	Unmodified	_KVLDTPHHSK_					0	0	0		ENST00000540664.5_1_10:98714714-98714867:+|nuORF	ENST00000540664.5_1_10:98714714-98714867:+|nuORF	ENST00000540664.5_1_10:98714714-98714867:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.8843994140625	3	387.884012	1160.63021	0.16413	6.3663E-05	0.15031	5.8302E-05	0.31444	0.00012197	387.884119514562	14.655	0.16841	14.655	14.596	14.764	0					7	3	3	0	0	0	0.4947	1	3863	3863		45.908	8.3999	1	176480			22548	10539	14572	14629	22873	22873					0.056316216288678334
KVLDTPHHSK	10	Unmodified	_KVLDTPHHSK_					0	0	0		ENST00000540664.5_1_10:98714714-98714867:+|nuORF	ENST00000540664.5_1_10:98714714-98714867:+|nuORF	ENST00000540664.5_1_10:98714714-98714867:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.8837890625	3	387.884012	1160.63021	-0.66922	-0.00025958	0.37995	0.00014737	-0.28927	-0.0001122	387.88410540357165	14.651	0.17047	14.651	14.558	14.728	0					7	3	3	0	0	0	0.40476	1	3711	3711		55.721	20.543	1	167070			22549	10539	14572	14629	22874	22874					0.056316216288678334
KVLETFLAK	9	Unmodified	_KVLETFLAK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8239135742188	2	524.823692	1047.63283	1.0008	0.00052525	0.4811	0.00025249	1.4819	0.00077775	524.8236630876411	31.785	0.15847	31.785	31.668	31.827	0					6	3	2	0	0	0	0.24334	1	12025	12025		56.434	6.9922	1	52719			22550	3210	14573	14630	22875	22875					0.11092077033845271
KVLFEDPL	8	Unmodified	_KVLFEDPL_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7720947265625	2	480.773668	959.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.781	1	17.781	17.281	18.281	0								0	0	0	1.7419	1	4524	4524		47.916	5.5195	1				22551	4870	14574	14631	22876	22876					0.05139839700041193
KVLGDEPDEP	10	Unmodified	_KVLGDEPDEP_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.76806640625	2	549.769311	1097.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.407	1	20.407	19.907	20.907	0								0	0	0	0.37602	1	6326	6326		37.812	1.3648	1		+		22552	13350	14575	14632	22877	22877					-0.020791787270809436
KVLGKDPGQK	10	Unmodified	_KVLGKDPGQK_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.3228759765625	2	535.321848	1068.62914	0.5999	0.00032114	0.24135	0.0001292	0.84124	0.00045034	535.3220261969274	22.848	0.35356	22.848	22.65	23.004	0					30	11	3	0	0	0	0.68774	1	6461	6461		23.523	0.48021	1	1091500	+		22553	15660	14576	14633	22878	22878					0.09757407259962747
KVLGPGPVSGP	11	Unmodified	_KVLGPGPVSGP_					0	0	0			REV__ENSG00000204843|ENST00000628224|DCTN1	REV__ENSG00000204843|ENST00000628224|DCTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2976989746094	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.029	1	28.029	27.529	28.529	0								0	0	0	0.39048	1	10105	10105		39.253	2.0937	1		+		22554	17503	14577	14634	22879	22879					0.07810333339944009
KVLIGDYTL	9	Unmodified	_KVLIGDYTL_					0	0	0			REV__ENST00000337872.8_1_4:4304620-4317556:+|nuORF	REV__ENST00000337872.8_1_4:4304620-4317556:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.30084228515625	2	511.30005	1020.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.175	1	43.175	42.675	43.675	0								0	0	0	0.28164	1	13653	13653		38.806	0	1		+		22555	18422	14578	14635	22880	22880					0.07607797762852897
KVLKILEEE	9	Unmodified	_KVLKILEEE_					0	0	0		tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	tr|U7SUI2|U7SUI2_FUSNUUPF0597proteinHMPREF1766_01169OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01169PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8121948242188	2	550.831714	1099.64888	1.8164	0.0010005	-0.08156	-4.4926E-05	1.7348	0.0009556	550.8316070787357	14.902	1.3544	14.902	14.794	16.149	0					66	27	4	0	0	0	0.34452	1	4068	4068		56.721	1.9447	1	14856000			22556	22825	14579	14636	22881	22881					0.10303738480092761
KVLLDRLF	8	Unmodified	_KVLLDRLF_					0	0	0		BNC2|p.I188V|1|0.4|ENSG00000173068|chr9:16552637-16552637|T/C|missense_variant	BNC2|p.I188V|1|0.4|ENSG00000173068|chr9:16552637-16552637|T/C|missense_variant	BNC2|p.I188V|1|0.4|ENSG00000173068|chr9:16552637-16552637|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.3183898925781	2	502.318577	1002.6226	0.97644	0.00049048	-1.1189	-0.00056206	-0.14249	-7.1578E-05	502.3180031189843	32.041	0.14974	32.041	31.945	32.095	0					9	3	3	0	0	0	0.58597	1	12150	12150		40.573	0	1	1021000			22557	306	14580	14637	22882	22882					0.12139514099271764
KVLLGRKVN	9	Unmodified	_KVLLGRKVN_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	342.8975830078125	3	342.897593	1025.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.517	1	18.517	18.017	19.017	0								0	0	0	0.3693	1	4850	4850		19.997	0	1				22558	2292	14581	14638	22883	22883					0.15914007739161207
KVLLSAATQ	9	Unmodified	_KVLLSAATQ_					0	0	0			REV__CFAP69|p.I662V|1|0.37|ENSG00000105792|chr7:90299993-90299993|A/G|missense_variant	REV__CFAP69|p.I662V|1|0.37|ENSG00000105792|chr7:90299993-90299993|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7842102050781	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.724	1	19.724	19.224	20.224	0								0	0	0	0.051298	1	6148	6148		85.862	5.4072	1		+		22559	12443	14582	14639	22884	22884					0.08698644448600135
KVLLSIHPLMD	11	Unmodified	_KVLLSIHPLMD_					0	0	0			REV__NOS1AP|p.Q347P|1|0.12|ENSG00000198929|chr1:162365504-162365504|A/C|missense_variant	REV__NOS1AP|p.Q347P|1|0.12|ENSG00000198929|chr1:162365504-162365504|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	633.36865234375	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.915	1	54.915	54.415	55.415	0								0	0	0	0.45674	1	20881	20881		22.58	1.7425	1		+		22560	21296	14583	14640	22885	22885					0.09955749281994031
KVLQLDQH	8	Unmodified	_KVLQLDQH_					0	0	0			REV__nc|ENSG00000117676|Q15418-3|RPS6KA1	REV__nc|ENSG00000117676|Q15418-3|RPS6KA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7798767089844	2	490.779816	979.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.622	1	18.622	18.122	19.122	0								0	0	0	1.7419	1	4897	4897		65.803	4.8312	1		+		22561	14205	14584	14641	22886	22886					0.054488761630864246
KVLREQEK	8	Unmodified	_KVLREQEK_					0	0	0		nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10	nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6-6|PRDM10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3080444335938	2	515.306198	1028.59784	3.247	0.0016732	0.56862	0.00029302	3.8156	0.0019662	515.3064494555501	34.029	0.55075	34.029	33.924	34.474	0					32	11	4	0	0	0	0.24681	1	13009	13009		107.01	2.261	1	3580200			22562	11642	14585	14642	22887	22887					0.08468834225891442
KVLSFICI	8	Unmodified	_KVLSFICI_					0	0	0			REV__ENST00000541507.1_12:9094188-9094401:-|nuORF	REV__ENST00000541507.1_12:9094188-9094401:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.7767333984375	2	461.775157	921.53576	2.5604	0.0011823	0.82005	0.00037868	3.3805	0.001561	461.77550492021226	18.497	0.31477	18.497	18.387	18.702	0					12	6	3	0	0	0	0.36926	1	5558	5558		74.517	3.1387	1	3341600	+		22563	20137	14586	14643	22888	22888					0.07185391553184672
KVLSTKGIGP	10	Unmodified	_KVLSTKGIGP_					0	0	0			REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.8778381347656	3	333.878087	998.612431	0.55573	0.00018555	-0.77013	-0.00025713	-0.2144	-7.1585E-05	334.2122854713901	22.378	0.23649	22.378	22.17	22.407	0					9	5	2	0	0	0	0.69166	1	6656	6656		21.686	0	1	43838	+		22564	22099	14587	14644	22889	22889					0.11306906374045411
KVLVADKSG	9	Unmodified	_KVLVADKSG_					0	0	0		nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4	nc|ENSG00000160193|P57081-2|WDR4	nc|ENSG00000160193|P57081-2|WDR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7816162109375	2	458.776742	915.538931	-0.71883	-0.00032978	0.21467	9.8487E-05	-0.50416	-0.0002313	458.77696133538757	16.927	0.11196	16.927	16.835	16.947	0					6	2	3	0	0	0	0.51817	1	4906	4906		30.504	1.3541	1	235410			22565	5343	14588	14645	22890	22890					0.07778357931567825
KVLVPDVPTL	10	Unmodified	_KVLVPDVPTL_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.8387451171875	2	540.8368	1079.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.072	1	17.072	16.572	17.572	0								0	0	0	0.4201	1	4207	4207		20.947	4.4738	1		+		22566	15398	14589	14646	22891	22891					0.1224034620531711
KVLVPVTTK	9	Unmodified	_KVLVPVTTK_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.82623291015625	2	492.826235	983.637917	-0.054542	-2.688E-05	-0.3411	-0.0001681	-0.39564	-0.00019498	492.826045637364	22.919	0.11574	22.919	22.862	22.978	0					4	2	2	0	0	0	0.19952	1	7841	7841		61.691	6.915	1	139870			22567	2697	14590	14647	22892	22892					0.14544380896450093
KVMGILINR	9	Unmodified	_KVMGILINR_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.3234252929688	2	522.323337	1042.63212	1.6249	0.0008487	-2.0772	-0.001085	-0.45235	-0.00023627	522.3226513247397	30.921	0.51032	30.921	30.714	31.224	0					22	10	3	0	0	0	0.13109	1	11490	11490		85.161	26.379	1	1550000			22568	2328	14591	14648	22893	22893					0.11250959113158387
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.2111511230469	3	350.21096	1047.61105	0.69888	0.00024475	-0.47816	-0.00016746	0.22072	7.7298E-05	350.2108043566409	11.421	0.10127	11.421	11.402	11.504	0					6	4	2	0	0	0	0.029571	1	2204	2204		136.52	60.345	1	212380			22569	7636	14592	14649	22894	22894					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8129272460938	2	524.812802	1047.61105	0.094604	4.965E-05	0.10675	5.6023E-05	0.20135	0.00010567	524.8129896494384	11.439	0.17043	11.439	11.378	11.549	0					14	7	3	0	0	0	0.001056	2	2199	2199;2232		182.39	80.791	1	1612800			22570	7636	14592	14649	22895;22896	22895					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.3155517578125	2	524.812802	1047.61105	0.59125	0.0003103	1.2768	0.0006701	1.8681	0.0009804	524.8134281845548	11.273	0.036589	11.273	11.239	11.276	0					4	2	2	0	0	0	0.017741	1	2160	2160		125.71	35.343	1	63075			22571	7636	14592	14649	22897	22897					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8133544921875	2	524.812802	1047.61105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.275	1	11.275	10.775	11.775	0								0	0	0	0.34101	1	2163	2163		27.047	5.0874	1				22572	7636	14592	14649	22898	22898					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.21112060546875	3	350.21096	1047.61105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.505	1	11.505	11.005	12.005	0								0	0	0	0.029874	1	2372	2372		123.21	51.331	1				22573	7636	14592	14649	22899	22899					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8131103515625	2	524.812802	1047.61105	1.7786	0.00093343	-1.3761	-0.00072221	0.40247	0.00021122	524.8122309366428	11.47	0.19378	11.47	11.427	11.62	0					12	5	4	0	0	0	1.4602E-05	1	2364	2364		204.42	60.538	1	1096500			22574	7636	14592	14649	22900	22900					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8131713867188	2	524.812802	1047.61105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.514	1	11.514	11.014	12.014	0								0	0	0	0.18541	1	2375	2375		53.089	7.1167	1				22575	7636	14592	14649	22901	22901					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.2111511230469	3	350.21096	1047.61105	-0.044637	-1.5632E-05	0.37312	0.00013067	0.32848	0.00011504	350.2112013869337	11.43	0.11304	11.43	11.38	11.493	0					9	5	3	0	0	0	0.12834	1	2218	2218		99.013	42.579	1	192990			22576	7636	14592	14649	22902	22902					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.81396484375	2	524.812802	1047.61105	1.6267	0.0008537	0.50359	0.00026429	2.1303	0.001118	524.8132940446311	11.435	0.13296	11.435	11.391	11.524	0					10	6	3	0	0	0	0.0079272	1	2215	2215		145.46	35.341	1	293320			22577	7636	14592	14649	22903	22903					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.2111511230469	3	350.21096	1047.61105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.453	1	11.453	10.953	11.953	0								0	0	0	0.3368	1	2229	2229		42.864	16.171	1				22578	7636	14592	14649	22904	22904					0.08914949013592377
KVMKDAKTK	9	Unmodified	_KVMKDAKTK_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8140258789062	2	524.812802	1047.61105	3.4384	0.0018045	-2.7635	-0.0014503	0.67483	0.00035416	524.8114104933386	11.428	0.15578	11.428	11.385	11.541	0					17	7	4	0	0	0	0.0071744	1	2212	2212		148.69	63.529	1	1974700			22579	7636	14592	14649	22905	22905					0.08914949013592377
KVMKDAKTK	9	Oxidation (M)	_KVM(Oxidation (M))KDAKTK_		KVM(1)KDAKTK		KVM(62)KDAKTK	0	0	1		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8106689453125	2	532.810259	1063.60597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.477	1	10.477	9.9774	10.977	0								0	0	0	0.14211	1	1994	1994		61.691	14.034	1				22580	7636	14592	14650	22906	22906		309			0.07670645150983546
KVMKDAKTK	9	Oxidation (M)	_KVM(Oxidation (M))KDAKTK_		KVM(1)KDAKTK		KVM(100)KDAKTK	0	0	1		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8118896484375	2	532.810259	1063.60597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.427	1	10.427	9.9272	10.927	0								0	0	0	0.018495	1	1986	1986		101.46	37.253	1				22581	7636	14592	14650	22907	22907		309			0.07670645150983546
KVMTKVIKK	9	Unmodified	_KVMTKVIKK_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.8577270507812	2	537.857012	1073.69947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.292	1	15.292	14.792	15.792	0								0	0	0	0.22075	1	3303	3303		47.96	13.787	1				22582	6046	14593	14651	22908	22908					0.16556989324112692
KVMTKVIKK	9	Unmodified	_KVMTKVIKK_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.907470703125	3	358.9071	1073.69947	0.86725	0.00031126	0.022239	7.9819E-06	0.88949	0.00031924	358.9070403799355	15.554	0.13896	15.554	15.462	15.601	0					5	3	2	0	0	0	0.50858	1	4050	4050		46.457	8.9486	1	50538			22583	6046	14593	14651	22909	22909					0.16556989324112692
KVMTKVIKK	9	Unmodified	_KVMTKVIKK_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8576049804688	2	537.857012	1073.69947	3.3544	0.0018042	-2.7216	-0.0014638	0.63282	0.00034037	537.855781197894	15.473	0.19884	15.473	15.38	15.579	0					9	4	3	0	0	0	0.18416	1	4101	4101		63.534	6.8128	1	1222400			22584	6046	14593	14651	22910	22910					0.16556989324112692
KVNEIAKHK	9	Unmodified	_KVNEIAKHK_					0	0	0		ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8224487304688	2	533.822015	1065.62948	1.7523	0.00093544	-0.99705	-0.00053225	0.75529	0.00040319	533.8215270672691	13.104	0.19067	13.104	13.012	13.203	0					6	4	2	0	0	0	0.28897	1	3122	3122		51.193	6.8155	1	511510			22585	6538	14594	14652	22911	22911					0.09928826979830774
KVNIENVALIQ	11	Unmodified	_KVNIENVALIQ_					0	0	0			REV__RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant	REV__RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.246826171875	3	414.246839	1239.71869	-0.74664	-0.00030929	0.48427	0.00020061	-0.26237	-0.00010869	414.24702689009644	27.455	0.59581	27.455	27.237	27.833	0					37	14	4	0	0	0	0.42842	1	9562	9562		49.466	6.0473	1	3194300	+		22586	15727	14595	14653	22912	22912					0.10841617148707883
KVNSGNKYN	9	Unmodified	_KVNSGNKYN_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2648315429688	2	512.26453	1022.51451	1.2509	0.00064081	-0.98325	-0.00050368	0.26769	0.00013713	512.2643393488368	19.421	0.31289	19.421	19.214	19.527	0					14	6	3	0	0	0	0.38666	1	6147	6147		42.864	2.2917	1	1011500			22587	1059	14596	14654	22913	22913					0.004150977780454923
KVNWLQLS	8	Unmodified	_KVNWLQLS_					0	0	0			REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF	REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2862854003906	2	494.284734	986.554916	2.8032	0.0013856	-0.034471	-1.7038E-05	2.7687	0.0013685	494.2848834420119	19.969	0.27001	19.969	19.757	20.027	0					15	5	4	0	0	0	0.54629	1	6276	6276		55.504	2.1528	1	821810	+		22588	14777	14597	14655	22914	22914					0.06110064168478857
KVPDQKGTPK	10	Unmodified	_KVPDQKGTPK_					0	0	0		ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.3199462890625	2	549.319306	1096.62406	0.51781	0.00028445	0.55782	0.00030642	1.0756	0.00059087	549.3196583414132	13.552	0.29925	13.552	13.445	13.744	0					17	8	3	0	0	0	0.46128	1	3117	3117		49.536	1.8787	1	162310			22589	6673	14598	14656	22915	22915					0.0796110339738334
KVPDQKGTPK	10	Unmodified	_KVPDQKGTPK_					0	0	0		ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.3199462890625	2	549.319306	1096.62406	1.7377	0.00095454	-0.60197	-0.00033067	1.1357	0.00062387	549.3189203984148	13.549	0.42078	13.549	13.419	13.84	0					18	9	3	0	0	0	0.3337	1	3317	3317		63.534	8.7575	1	258330			22590	6673	14598	14656	22916	22916					0.0796110339738334
KVPDSDYGR	9	Unmodified	_KVPDSDYGR_					0	0	0			REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7562866210938	2	518.756538	1035.49852	-1.389	-0.00072054	0.34573	0.00017935	-1.0432	-0.00054119	518.7565993932338	23.244	0.18913	23.244	23.152	23.341	0					6	4	2	0	0	0	0.56424	1	7076	7076		25.574	2.5316	1	181800	+		22591	14632	14599	14657	22917	22917					-0.017806084588528392
KVPESLVR	8	Unmodified	_KVPESLVR_					0	0	0		ENST00000489107.1_1_9:12775714-12777225:+|nuORF;ENSG00000153714|ENST00000319264|LURAP1L	ENST00000489107.1_1_9:12775714-12777225:+|nuORF	ENST00000489107.1_1_9:12775714-12777225:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.28460693359375	2	464.284734	926.554916	-0.42778	-0.00019861	0.30079	0.00013965	-0.12699	-5.8958E-05	464.28483138985905	39.398	0.14676	39.398	39.333	39.479	0					11	8	2	0	0	0	0.73426	1	14039	14039		29.15	1.2673	1	80822			22592	5058	14600	14658	22918	22918					0.0887006416847953
KVPNEDIY	8	Unmodified	_KVPNEDIY_					0	0	0		tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.25262451171875	2	489.250557	976.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.396	1	27.396	26.896	27.896	0								0	0	0	1.7419	1	8436	8436		23.042	3.6825	1				22593	22801	14601	14659	22919	22919					-0.0026222520206147237
KVPQLVSAT	9	Unmodified	_KVPQLVSAT_					0	0	0			REV__QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	REV__QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7845764160156	2	471.784567	941.554582	-0.59644	-0.00028139	0.87693	0.00041372	0.28049	0.00013233	471.7850014455955	17.771	0.3669	17.771	17.488	17.855	0					21	9	3	0	0	0	0.2873	1	5061	5061		51.335	1.8939	1	942610	+		22594	17389	14602	14660	22920	22920					0.08146644448606821
KVPQVSTPT	9	Unmodified	_KVPQVSTPT_					0	0	0		nc|ENSG00000163631|P02768-2|ALB;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;CON__P02769	nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-2|ALB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.773193359375	2	478.7742	955.533846	-0.033251	-1.592E-05	-0.88682	-0.00042459	-0.92008	-0.00044051	478.7738221866377	24.032	0.27502	24.032	23.82	24.095	0					16	9	2	0	0	0	0.36892	1	6962	6962		44.377	3.599	1	149740		+	22595	110	14603	14661	22921	22921					0.054300540689382615
KVPQVSTPT	9	Unmodified	_KVPQVSTPT_					0	0	0		nc|ENSG00000163631|P02768-2|ALB;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;CON__P02769	nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-2|ALB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7737731933594	2	478.7742	955.533846	-0.25743	-0.00012325	-0.38945	-0.00018646	-0.64688	-0.00030971	478.7740360501346	24.266	0.32583	24.266	24.079	24.405	0					18	7	3	0	0	0	0.12834	1	8134	8134		72.879	1.0018	1	790340		+	22596	110	14603	14661	22922	22922					0.054300540689382615
KVPQVSTPT	9	Unmodified	_KVPQVSTPT_					0	0	0		nc|ENSG00000163631|P02768-2|ALB;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;CON__P02769	nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-2|ALB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7738342285156	2	478.7742	955.533846	-0.45231	-0.00021655	-0.16507	-7.903E-05	-0.61738	-0.00029558	478.7741152268654	24.238	0.3645	24.238	24.029	24.393	0					14	7	2	0	0	0	0.15163	1	8445	8445		67.494	21.521	1	437170		+	22597	110	14603	14661	22923	22923					0.054300540689382615
KVPSDTLPLK	10	Unmodified	_KVPSDTLPLK_					0	0	0		ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.33203125	2	549.331882	1096.64921	0.53195	0.00029222	0.11273	6.1924E-05	0.64467	0.00035414	549.3318674735003	27.254	0.9244	27.254	27.002	27.926	0					38	18	3	0	0	0	0.56063	1	9776	9776		38.754	4.832	1	140330			22598	1260	14604	14662	22924	22924					0.10475158199960788
KVQDSVLIK	9	Unmodified	_KVQDSVLIK_					0	0	0		SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.31884765625	2	515.318774	1028.623	0.77607	0.00039993	-0.54453	-0.00028061	0.23154	0.00011932	515.3184573578975	24.071	0.11822	24.071	24.012	24.13	0					4	2	2	0	0	0	0.040209	1	8388	8388		99.013	29.385	1	171970			22599	2476	14605	14663	22925	22925					0.1098288902846889
KVQDSVLIK	9	Unmodified	_KVQDSVLIK_					0	0	0		SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3187255859375	2	515.318774	1028.623	0.15606	8.0419E-05	-0.13064	-6.7319E-05	0.025422	1.3101E-05	515.3186368495309	24.088	0.16688	24.088	23.981	24.147	0					8	3	3	0	0	0	0.090954	1	8249	8249		81.525	14.031	1	208880			22600	2476	14605	14663	22926	22926					0.1098288902846889
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.94189453125	3	438.941638	1313.80309	0.26629	0.00011689	0.057015	2.5026E-05	0.32331	0.00014191	438.9415901303956	15.882	0.13021	15.882	15.811	15.941	0					13	6	3	0	0	0	0.33911	1	3526	3526		84.31	27.678	1	285120			22601	3867	14606	14664	22927	22927					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	657.9088745117188	2	657.908819	1313.80309	0.24329	0.00016007	-0.53263	-0.00035042	-0.28934	-0.00019036	657.9083613588907	15.888	0.08833	15.888	15.829	15.918	0					10	4	3	0	0	0	0.00014743	1	3524	3524		144.55	85.92	1	89850			22602	3867	14606	14664	22928	22928					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	657.9089965820312	2	657.908819	1313.80309	-0.14154	-9.3119E-05	0.52782	0.00034726	0.38628	0.00025414	657.9091603953977	16.188	0.17939	16.188	16.096	16.275	0					10	4	3	0	0	0	5.5454E-18	1	4343	4343		229.82	114.96	1	1618400			22603	3867	14606	14664	22929	22929					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	657.9080810546875	2	657.908819	1313.80309	1.3651	0.00089812	-1.8884	-0.0012424	-0.52325	-0.00034425	657.9076043641379	15.905	0.073058	15.905	15.855	15.928	0					8	3	3	0	0	0	0.2472	1	3709	3709		68.626	11.994	1	122410			22604	3867	14606	14664	22930	22930					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	657.9089965820312	2	657.908819	1313.80309	-0.96315	-0.00063366	1.2607	0.00082942	0.29754	0.00019576	657.9097222432747	16.154	0.16627	16.154	16.047	16.213	0					6	3	2	0	0	0	3.6553E-05	1	4570	4570		166.86	85.338	1	862600			22605	3867	14606	14664	22931	22931					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.9419860839844	3	438.941638	1313.80309	0.32378	0.00014212	0.28922	0.00012695	0.613	0.00026907	438.9417377839086	15.956	0.086955	15.956	15.898	15.985	0					8	3	3	0	0	0	0.22894	1	3672	3672		117.71	52.548	1	230440			22606	3867	14606	14664	22932	22932					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2760314941406	3	438.941638	1313.80309	-0.59616	-0.00026168	1.1327	0.00049717	0.5365	0.00023549	439.276300957377	15.947	0.10913	15.947	15.893	16.002	0					10	4	3	0	0	0	0.20102	1	3681	3681		120.63	41.141	1	187870			22607	3867	14606	14664	22933	22933					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.94140625	3	438.941638	1313.80309	-0.57467	-0.00025225	0.087395	3.8361E-05	-0.48728	-0.00021389	438.9416453996957	16.106	0.3709	16.106	16.047	16.418	0					12	7	2	0	0	0	0.051542	1	4401	4401		141.89	10.799	1	2104300			22608	3867	14606	14664	22934	22934					0.15873567965468283
KVQEMNYIQK	10	Unmodified	_KVQEMNYIQK_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.5602111816406	3	427.560429	1279.65946	0.27904	0.0001193	-0.058314	-2.4933E-05	0.22072	9.4372E-05	427.56036358478116	24.553	0.14081	24.553	24.462	24.602	0					6	3	2	0	0	0	0.08194	1	8272	8272		131.12	18.82	1	232050			22609	1420	14607	14665	22935	22935					0.030813978628657424
KVQEMNYIQK	10	Unmodified	_KVQEMNYIQK_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	640.8373413085938	2	640.837005	1279.65946	-0.77639	-0.00049754	1.3558	0.00086882	0.57937	0.00037128	640.8379255878524	24.317	0.13316	24.317	24.249	24.382	0					7	4	2	0	0	0	0.15477	1	7435	7435		85.862	15.046	1	101790			22610	1420	14607	14665	22936	22936					0.030813978628657424
KVQEMNYIQK	10	Unmodified	_KVQEMNYIQK_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.5601501464844	3	427.560429	1279.65946	-0.5049	-0.00021588	0.00034244	1.4641E-07	-0.50456	-0.00021573	427.56045673089926	24.52	0.11328	24.52	24.463	24.577	0					6	2	3	0	0	0	0.22691	1	8604	8604		107.45	20.573	1	319900			22611	1420	14607	14665	22937	22937					0.030813978628657424
KVQEMNYIQK	10	Unmodified	_KVQEMNYIQK_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	640.8373413085938	2	640.837005	1279.65946	1.7921	0.0011484	-1.2025	-0.00077063	0.58958	0.00037782	640.8363355416999	24.554	0.21429	24.554	24.447	24.661	0					10	4	3	0	0	0	0.026898	1	8619	8619		120.31	24.272	1	594370			22612	1420	14607	14665	22938	22938					0.030813978628657424
KVQEPQGKAK	10	Unmodified	_KVQEPQGKAK_					0	0	0		ENST00000394974.2_1_1:58694357-58694534:-|nuORF;ENST00000394971.7_1_16:31102457-31105584:-|nuORF;ENSG00000167397|ENST00000394975|VKORC1	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.82568359375	2	556.824755	1111.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.445	1	12.445	11.945	12.945	0								0	0	0	0.3598	1	2365	2365		41.427	2.1738	1				22613	5988	14608	14666	22939	22939					0.0836050577165679
KVQEPQGKAK	10	Unmodified	_KVQEPQGKAK_					0	0	0		ENST00000394974.2_1_1:58694357-58694534:-|nuORF;ENST00000394971.7_1_16:31102457-31105584:-|nuORF;ENSG00000167397|ENST00000394975|VKORC1	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.5522766113281	3	371.552262	1111.63496	0.77876	0.00028935	-0.89792	-0.00033363	-0.11916	-4.4276E-05	371.55189243657316	12.668	0.2709	12.668	12.538	12.809	0					11	8	2	0	0	0	0.46128	1	2731	2731		61.765	19.426	1	61921			22614	5988	14608	14666	22940	22940					0.0836050577165679
KVQEPQGKAK	10	Unmodified	_KVQEPQGKAK_					0	0	0		ENST00000394974.2_1_1:58694357-58694534:-|nuORF;ENST00000394971.7_1_16:31102457-31105584:-|nuORF;ENSG00000167397|ENST00000394975|VKORC1	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.8253173828125	2	556.824755	1111.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.615	1	12.615	12.115	13.115	0								0	0	0	0.051595	1	2693	2693		90.601	20.973	1				22615	5988	14608	14666	22941	22941					0.0836050577165679
KVQEPQGKAK	10	Unmodified	_KVQEPQGKAK_					0	0	0		ENST00000394974.2_1_1:58694357-58694534:-|nuORF;ENST00000394971.7_1_16:31102457-31105584:-|nuORF;ENSG00000167397|ENST00000394975|VKORC1	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.55279541015625	3	371.552262	1111.63496	-0.27985	-0.00010398	0.92857	0.00034501	0.64873	0.00024104	371.552816525058	12.657	0.17389	12.657	12.582	12.756	0					5	4	2	0	0	0	0.46128	1	2762	2762		61.765	10.237	1	38543			22616	5988	14608	14666	22942	22942					0.0836050577165679
KVQEPQGKAK	10	Unmodified	_KVQEPQGKAK_					0	0	0		ENST00000394974.2_1_1:58694357-58694534:-|nuORF;ENST00000394971.7_1_16:31102457-31105584:-|nuORF;ENSG00000167397|ENST00000394975|VKORC1	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.5519714355469	3	371.552262	1111.63496	0.79811	0.00029654	-0.81056	-0.00030116	-0.012448	-4.6249E-06	371.551786686719	12.652	0.21377	12.652	12.526	12.74	0					11	5	3	0	0	0	0.39827	1	2757	2757		77.533	24.444	1	64986			22617	5988	14608	14666	22943	22943					0.0836050577165679
KVQGSCEGAH	10	Unmodified	_KVQGSCEGAH_					0	0	0		nc|ENSG00000129226|P34810-3|CD68;ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF;nc|ENSG00000129226|P34810-2|CD68	nc|ENSG00000129226|P34810-3|CD68	nc|ENSG00000129226|P34810-3|CD68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2349853515625	2	508.234916	1014.45528	-0.026101	-1.3266E-05	0.0073068	3.7136E-06	-0.018794	-9.552E-06	508.23511977418764	13.741	0.12655	13.741	13.694	13.82	0					7	3	3	0	0	0	0.37692	1	3202	3202		58.782	10.866	1	1133200			22618	3586	14609	14667	22944	22944					-0.051371215077892884
KVQQQQPQ	8	Unmodified	_KVQQQQPQ_					0	0	0			REV__ENSG00000169474|ENST00000368762|SPRR1A	REV__ENSG00000169474|ENST00000368762|SPRR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2677001953125	2	492.267073	982.519593	-0.058039	-2.857E-05	2.3277	0.0011458	2.2696	0.0011173	492.2681584534608	32.423	0.32893	32.423	32.372	32.701	0					10	8	2	0	0	0	0.41952	1	12333	12333		68.485	4.2774	1	79805	+		22619	16315	14610	14668	22945	22945					0.027634016406636874
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.55706787109375	3	348.557236	1042.64988	0.17874	6.2302E-05	-0.80103	-0.00027921	-0.62229	-0.0002169	348.55701348372384	16.037	0.08593	16.037	15.971	16.057	0					8	3	3	0	0	0	0.30951	1	3573	3573		65.465	9.0316	1	243160			22620	7426	14611	14669	22946	22946					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.3323974609375	2	522.332216	1042.64988	1.6195	0.00084591	-1.229	-0.00064194	0.39049	0.00020396	522.3315260333404	16.367	0.3525	16.367	16.194	16.546	0					16	8	4	0	0	0	0.0037134	1	4411	4411		164.46	35.034	1	3373100			22621	7426	14611	14669	22947	22947					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.5572509765625	3	348.557236	1042.64988	0.49915	0.00017398	-0.4518	-0.00015748	0.04735	1.6504E-05	348.55709303915495	16.358	0.35422	16.358	16.18	16.534	0					18	8	3	0	0	0	0.0406	1	4421	4421		114.89	24.294	1	5119100			22622	7426	14611	14669	22948	22948					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.33251953125	2	522.332216	1042.64988	1.0578	0.0005525	-0.57627	-0.000301	0.48149	0.0002515	522.3319230020493	16.289	0.16646	16.289	16.23	16.396	0					8	3	3	0	0	0	0.0016668	1	4635	4635		176.44	14.192	1	864150			22623	7426	14611	14669	22949	22949					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5572204589844	3	348.557236	1042.64988	0.51322	0.00017889	-0.59788	-0.0002084	-0.084663	-2.951E-05	348.5570754177004	16.305	0.21654	16.305	16.247	16.463	0					5	4	2	0	0	0	0.33044	1	4643	4643		54.722	15.969	1	523970			22624	7426	14611	14669	22950	22950					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.3322143554688	2	522.332216	1042.64988	1.4938	0.00078028	-0.92108	-0.00048111	0.57276	0.00029917	522.3318320913412	16.09	0.11322	16.09	16.002	16.115	0					7	3	3	0	0	0	0.0097668	1	3745	3745		141.52	22.777	1	200820			22625	7426	14611	14669	22951	22951					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.3327026367188	2	522.332216	1042.64988	1.0765	0.00056232	-0.17864	-9.3312E-05	0.8979	0.000469	522.3321442277534	16.074	0.10599	16.074	16.026	16.132	0					7	3	3	0	0	0	0.0049871	1	3742	3742		158.07	18.104	1	262400			22626	7426	14611	14669	22952	22952					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.3324584960938	2	522.332216	1042.64988	0.42946	0.00022432	0.13984	7.304E-05	0.5693	0.00029736	522.3322522147944	16.259	0.26688	16.259	16.2	16.466	0					10	5	3	0	0	0	0.0047071	1	4473	4473		159.28	29.855	1	3525300			22627	7426	14611	14669	22953	22953					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.3326416015625	2	522.332216	1042.64988	1.6248	0.00084868	-1.199	-0.00062629	0.42576	0.00022239	522.331600926535	16.292	0.32058	16.292	16.08	16.401	0					11	6	3	0	0	0	0.0055674	1	4468	4468		155.58	24.553	1	1720900			22628	7426	14611	14669	22954	22954					0.1302599763962462
KVQSVSQNK	9	Unmodified	_KVQSVSQNK_					0	0	0		NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28814697265625	2	509.288005	1016.56146	-0.017948	-9.1408E-06	-0.33044	-0.00016829	-0.34838	-0.00017743	509.2877818190943	12.684	0.16226	12.684	12.595	12.758	0					9	5	3	0	0	0	0.0025398	1	2713	2713		155.58	28.123	1	959090			22629	7874	14612	14670	22955	22955					0.05383957329183886
KVQSVSQNK	9	Unmodified	_KVQSVSQNK_					0	0	0		NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2878723144531	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.698	1	12.698	12.198	13.198	0								0	0	0	0.0020332	1	2921	2921		125.71	42.962	1				22630	7874	14612	14670	22956	22956					0.05383957329183886
KVQTAVTMK	9	Unmodified	_KVQTAVTMK_					0	0	0		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.292236328125	2	503.291702	1004.56885	1.6747	0.00084285	-0.43563	-0.00021925	1.239	0.0006236	503.29132215563544	18.673	0.078411	18.673	18.633	18.711	0					4	2	2	0	0	0	0.035106	1	4690	4690		104.01	45.232	1	55930			22631	3704	14613	14671	22957	22957					0.06674973605254308
KVQTAVTMK	9	Unmodified	_KVQTAVTMK_					0	0	0		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2921142578125	2	503.291702	1004.56885	0.62365	0.00031388	0.082024	4.1282E-05	0.70567	0.00035516	503.29177535192554	18.996	0.12839	18.996	18.903	19.031	0					7	3	3	0	0	0	0.0055674	1	5658	5658		155.58	62.389	1	389720			22632	3704	14613	14671	22958	22958					0.06674973605254308
KVQTAVTMK	9	Unmodified	_KVQTAVTMK_					0	0	0		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2915344238281	2	503.291702	1004.56885	0.076765	3.8635E-05	-0.63853	-0.00032136	-0.56176	-0.00028273	503.291608889474	18.942	0.31378	18.942	18.834	19.148	0					18	6	5	0	0	0	0.0014418	1	5888	5888		178.55	75.774	1	8801900			22633	3704	14613	14671	22959	22959					0.06674973605254308
KVQTAVTMK	9	Unmodified	_KVQTAVTMK_					0	0	0		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.29144287109375	2	503.291702	1004.56885	-0.15102	-7.6006E-05	-0.08245	-4.1496E-05	-0.23347	-0.0001175	503.29163297505875	18.739	0.13918	18.739	18.652	18.792	0					6	3	2	0	0	0	0.0030642	1	4959	4959		168.26	63.512	1	1085500			22634	3704	14613	14671	22960	22960					0.06674973605254308
KVQTAVTMK	9	Unmodified	_KVQTAVTMK_					0	0	0		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2922668457031	2	503.291702	1004.56885	-0.45636	-0.00022968	1.3984	0.0007038	0.94202	0.00047411	503.29244274009176	18.906	0.40162	18.906	18.811	19.212	0					14	8	2	0	0	0	0.00014666	1	5757	5757		191.45	79.801	1	12796000			22635	3704	14613	14671	22961	22961					0.06674973605254308
KVQTEVLQK	9	Unmodified	_KVQTEVLQK_					0	0	0		ENST00000463906.1_1_1:43630116-43636618:-|nuORF;ENSG00000117395|ENST00000236051|EBNA1BP2	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8226928710938	2	536.821681	1071.62881	0.70513	0.00037853	0.51235	0.00027504	1.2175	0.00065357	536.8218635323326	19.365	0.11779	19.365	19.284	19.402	0					5	3	2	0	0	0	0.020674	1	5000	5000		120.87	48.991	1	100130			22636	3034	14614	14672	22962	22962					0.09585987540117458
KVQTEVLQK	9	Unmodified	_KVQTEVLQK_					0	0	0		ENST00000463906.1_1_1:43630116-43636618:-|nuORF;ENSG00000117395|ENST00000236051|EBNA1BP2	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8220825195312	2	536.821681	1071.62881	0.20433	0.00010969	-0.12566	-6.7457E-05	0.078673	4.2233E-05	536.8218763483319	19.701	0.27677	19.701	19.508	19.784	0					9	6	2	0	0	0	0.026848	1	6000	6000		112.11	26.946	1	617260			22637	3034	14614	14672	22963	22963					0.09585987540117458
KVQTEVLQK	9	Unmodified	_KVQTEVLQK_					0	0	0		ENST00000463906.1_1_1:43630116-43636618:-|nuORF;ENSG00000117395|ENST00000236051|EBNA1BP2	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8211669921875	2	536.821681	1071.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.392	1	19.392	18.892	19.892	0								0	0	0	0.25587	1	5243	5243		42.864	3.6114	1				22638	3034	14614	14672	22964	22964					0.09585987540117458
KVQTEVLQK	9	Unmodified	_KVQTEVLQK_					0	0	0		ENST00000463906.1_1_1:43630116-43636618:-|nuORF;ENSG00000117395|ENST00000236051|EBNA1BP2	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8218383789062	2	536.821681	1071.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.619	1	19.619	19.119	20.119	0								0	0	0	0.034344	1	6233	6233		93.598	29.39	1				22639	3034	14614	14672	22965	22965					0.09585987540117458
KVQYVIQG	8	Unmodified	_KVQYVIQG_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.77099609375	2	467.77146	933.528367	-0.71959	-0.00033661	0.37319	0.00017457	-0.34641	-0.00016204	467.7716862787094	37.647	0.24027	37.647	37.568	37.808	0					25	11	4	0	0	0	0.49887	1	13462	13462		60.294	3.5729	1	262320			22640	5243	14615	14673	22966	22966					0.05894375277136987
KVRAHRGPS	9	Unmodified	_KVRAHRGPS_					0	0	0		ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENST00000565205.5_1_16:88925858-88927364:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.29803466796875	2	504.296499	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.158	1	26.158	25.658	26.658	0								0	0	0	0.24724	1	7913	7913		44.117	3.3386	1				22641	10749	14616	14674	22967	22967					0.07541922725658878
KVRAHRGPS	9	Unmodified	_KVRAHRGPS_					0	0	0		ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENST00000565205.5_1_16:88925858-88927364:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2972106933594	2	504.296499	1006.57845	-0.83512	-0.00042115	0.41959	0.0002116	-0.41552	-0.00020955	504.2963797010977	21.866	1.4149	21.866	21.386	22.801	0					65	44	2	0	0	0	0.30951	1	6392	6392		49.442	5.0644	1	156310			22642	10749	14616	14674	22968	22968					0.07541922725658878
KVRAHRGPS	9	Unmodified	_KVRAHRGPS_					0	0	0		ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENST00000565205.5_1_16:88925858-88927364:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2987365722656	2	504.296499	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.676	1	49.676	49.176	50.176	0								0	0	0	0.24724	1	19639	19639		44.117	1.7207	1				22643	10749	14616	14674	22969	22969					0.07541922725658878
KVRALLVEP	9	Unmodified	_KVRALLVEP_					0	0	0		ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF	ENSG00000198959|ENST00000361475|TGM2	ENSG00000198959|ENST00000361475|TGM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.82958984375	2	512.829309	1023.64407	0.069698	3.5743E-05	2.7998	0.0014358	2.8695	0.0014715	512.8298902766539	34.643	0.21199	34.643	34.538	34.75	0					7	4	2	0	0	0	0.18605	1	13313	13313		63.306	8.53	1	74933			22644	7646	14617	14675	22970	22970					0.13318899127989425
KVRAQVRA	8	Unmodified	_KVRAQVRA_					0	0	0		ENST00000359541.6_1_2:27564849-27564936:-|nuORF	ENST00000359541.6_1_2:27564849-27564936:-|nuORF	ENST00000359541.6_1_2:27564849-27564936:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2972717285156	2	464.295968	926.577383	2.6006	0.0012074	-0.017064	-7.9226E-06	2.5835	0.0011995	464.29594495340393	43.834	0.29533	43.834	43.756	44.052	0					18	10	3	0	0	0	0.65276	1	17549	17549		40.573	40.573	1	418320			22645	8851	14618	14676	22971	22971					0.1111570835674911
KVRDGDFLKL	10	Unmodified	_KVRDGDFLKL_					0	0	0		ENST00000599736.5_1_19:4342437-4342713:-|nuORF	ENST00000599736.5_1_19:4342437-4342713:-|nuORF	ENST00000599736.5_1_19:4342437-4342713:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.8486328125	2	595.84823	1189.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.265	1	14.265	13.765	14.765	0								0	0	0	0.2634	1	2989	2989		56.434	5.2411	1				22646	11029	14619	14677	22972	22972					0.09465365322807884
KVREVEIEK	9	Unmodified	_KVREVEIEK_					0	0	0			REV__ENSG00000117228|ENST00000370473|GBP1	REV__ENSG00000117228|ENST00000370473|GBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.223876953125	3	377.224034	1128.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.051	1	19.051	18.551	19.551	0								0	0	0	0.15687	1	5955	5955		58.23	0	1		+		22647	14185	14620	14678	22973	22973					0.09109372568855179
KVRHKSAS	8	Unmodified	_KVRHKSAS_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7721252441406	2	456.772326	911.530098	-0.63179	-0.00028858	-0.027129	-1.2392E-05	-0.65892	-0.00030097	456.77225871180474	51.725	0.25297	51.725	51.64	51.893	0					21	15	2	0	0	0	0.78978	1	18433	18433		21.96	4.5949	1	112740			22648	1983	14621	14679	22974	22974					0.07079429085752054
KVRHQCKK	8	Unmodified	_KVRHQCKK_					0	0	0			REV__PHRF1|p.R371C|1|0.15|ENSG00000070047|chr11:601660-601660|C/T|missense_variant	REV__PHRF1|p.R371C|1|0.15|ENSG00000070047|chr11:601660-601660|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.803955078125	2	513.803103	1025.59165	0.017502	8.9927E-06	1.1758	0.00060413	1.1933	0.00061312	513.8037791421001	11.852	1.4033	11.852	11.786	13.189	0					88	44	4	0	0	0	0.75243	1	2553	2553		26.796	0	1	4648100	+		22649	21369	14622	14680	22975	22975					0.07988037513382551
KVRKDLAN	8	Unmodified	_KVRKDLAN_					0	0	0			REV__SF3B1|p.G922D|1|0.35|ENSG00000115524|chr2:197400388-197400388|C/T|missense_variant	REV__SF3B1|p.G922D|1|0.35|ENSG00000115524|chr2:197400388-197400388|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.28729248046875	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.457	1	21.457	20.957	21.957	0								0	0	0	1.7419	1	7118	7118		65.803	1.5959	1		+		22650	21508	14623	14681	22976	22976					0.08748582399982752
KVRKGDFR	8	Unmodified	_KVRKGDFR_					0	0	0		ENST00000301244.11_1_19:38755282-38755522:+|nuORF	ENST00000301244.11_1_19:38755282-38755522:+|nuORF	ENST00000301244.11_1_19:38755282-38755522:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.300537109375	2	503.30125	1004.58795	-2.0471	-0.0010303	0.66879	0.00033661	-1.3783	-0.00069372	503.3015101080513	19.776	0.13811	19.776	19.689	19.827	0					6	3	2	0	0	0	0.62915	1	5424	5424		42.396	1.3161	1	430570			22651	8491	14624	14682	22977	22977					0.08583691011176597
KVRKSRQP	8	Unmodified	_KVRKSRQP_					0	0	0			REV__ENSG00000064393|ENST00000406875|HIPK2	REV__ENSG00000064393|ENST00000406875|HIPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.81561279296875	2	499.814525	997.614496	1.076	0.00053782	1.1187	0.00055913	2.1947	0.001097	499.81499821807455	35.475	0.27247	35.475	35.364	35.637	0					12	5	3	0	0	0	0.46905	1	13711	13711		63.306	8.5416	1	582090	+		22652	13104	14625	14683	22978	22978					0.11559379902507771
KVRSRLKQ	8	Unmodified	_KVRSRLKQ_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5;HDAC5|p.E566Gfs*15|1|0.29|ENSG00000108840|chr17:44087599-44087600|-/C|frameshift_variant;nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;HDAC9|p.D553Mfs*46|1|0.4|ENSG00000048052|chr7:18666406-18666412|CAGTGGA/-|frameshift_variant;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;nc|ENSG00000048052|Q9UKV0-10|HDAC9	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.8316650390625	2	507.830175	1013.6458	2.9504	0.0014983	-0.25292	-0.00012844	2.6974	0.0013698	507.83003869483576	38.151	0.24506	38.151	38.055	38.3	0					13	5	3	0	0	0	0.59773	1	14985	14985		49.442	0	1	512370			22653	2553;1226	14626	14684	22979	22979					0.13951952936611178
KVRTLIEQ	8	Unmodified	_KVRTLIEQ_					0	0	0		nc|ENSG00000136152|Q96JB2-2|COG3;ENSG00000136152|ENST00000349995|COG3	nc|ENSG00000136152|Q96JB2-2|COG3	nc|ENSG00000136152|Q96JB2-2|COG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.80255126953125	2	493.803291	985.59203	-0.084777	-4.1863E-05	-0.36454	-0.00018001	-0.44932	-0.00022188	493.8029975763893	21.619	0.14932	21.619	21.544	21.694	0					12	4	3	0	0	0	0.27364	1	5975	5975		91.265	16.222	1	494370			22654	4056	14627	14685	22980	22980					0.09865735714242874
KVRTLIEQ	8	Unmodified	_KVRTLIEQ_					0	0	0		nc|ENSG00000136152|Q96JB2-2|COG3;ENSG00000136152|ENST00000349995|COG3	nc|ENSG00000136152|Q96JB2-2|COG3	nc|ENSG00000136152|Q96JB2-2|COG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.8031921386719	2	493.803291	985.59203	0.76704	0.00037877	-1.5676	-0.00077407	-0.80052	-0.0003953	493.80261032531996	21.963	0.26506	21.963	21.867	22.132	0					10	6	2	0	0	0	0.12535	1	7054	7054		172.25	28.362	1	1378200			22655	4056	14627	14685	22981	22981					0.09865735714242874
KVRTLIEQ	8	Unmodified	_KVRTLIEQ_					0	0	0		nc|ENSG00000136152|Q96JB2-2|COG3;ENSG00000136152|ENST00000349995|COG3	nc|ENSG00000136152|Q96JB2-2|COG3	nc|ENSG00000136152|Q96JB2-2|COG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.80364990234375	2	493.803291	985.59203	0.88839	0.00043869	-1.3105	-0.00064711	-0.42208	-0.00020842	493.8028462416739	21.832	0.26731	21.832	21.62	21.887	0					13	5	4	0	0	0	0.22997	1	7182	7182		123.21	13.73	1	1172700			22656	4056	14627	14685	22982	22982					0.09865735714242874
KVRVYEFR	8	Unmodified	_KVRVYEFR_					0	0	0		ENST00000460870.1_1_1:208383501-208390355:-|nuORF;nc|ENSG00000076356|O75051-2|PLXNA2	ENST00000460870.1_1_1:208383501-208390355:-|nuORF	ENST00000460870.1_1_1:208383501-208390355:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.2135925292969	3	366.213581	1095.61891	0.48095	0.00017613	-0.28612	-0.00010478	0.19483	7.135E-05	366.21339186261105	32.554	0.4895	32.554	32.385	32.875	0					23	12	3	0	0	0	0.77246	1	12387	12387		24.203	0	1	342890			22657	9726	14628	14686	22983	22983					0.07492844325406622
KVSAQGKQY	9	Unmodified	_KVSAQGKQY_					0	0	0			REV__ENSG00000010219|ENST00000543431|DYRK4	REV__ENSG00000010219|ENST00000543431|DYRK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7772216796875	2	504.777274	1007.53999	0.11526	5.8181E-05	-0.17889	-9.0302E-05	-0.063634	-3.2121E-05	504.7772896451874	26.264	0.18831	26.264	26.165	26.353	0					9	4	3	0	0	0	0.13267	1	8435	8435		71.877	11.947	1	213070	+		22658	12890	14629	14687	22984	22984					0.036525723004729116
KVSDGELVKK	10	Unmodified	_KVSDGELVKK_					0	0	0			REV__ENSG00000120729|ENST00000239926|MYOT	REV__ENSG00000120729|ENST00000239926|MYOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.8272705078125	2	551.826963	1101.63937	0.73469	0.00040542	0.097381	5.3738E-05	0.83207	0.00045916	551.826953164953	17.387	0.3057	17.387	17.141	17.447	0					10	6	2	0	0	0	0.1998	1	5021	5021		79.489	1.9558	1	146860	+		22659	14295	14630	14688	22985	22985					0.09261970194552305
KVSDINISK	9	Unmodified	_KVSDINISK_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;PLCE1|p.P70Dfs*7|1|0.06|ENSG00000138193|chr10:94031253-94031254|-/GA|frameshift_variant;PLCE1|p.P70Lfs*8|1|0.04|ENSG00000138193|chr10:94031254-94031255|-/TAACA|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2926025390625	2	502.292756	1002.57096	1.6482	0.00082786	-0.84372	-0.00042379	0.80444	0.00040406	502.2922285538993	21.282	0.15878	21.282	21.218	21.377	0					5	4	2	0	0	0	0.016046	1	5836	5836		145.46	38.778	1	85665			22660	4240	14631	14689	22986	22986					0.06977725614706287
KVSDINISK	9	Unmodified	_KVSDINISK_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;PLCE1|p.P70Dfs*7|1|0.06|ENSG00000138193|chr10:94031253-94031254|-/GA|frameshift_variant;PLCE1|p.P70Lfs*8|1|0.04|ENSG00000138193|chr10:94031254-94031255|-/TAACA|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.29248046875	2	502.292756	1002.57096	0.61248	0.00030764	-1.125	-0.00056507	-0.51249	-0.00025742	502.29221935422646	21.614	0.19425	21.614	21.487	21.682	0					12	4	4	0	0	0	0.0095952	1	6892	6892		147.73	32.874	1	556640			22661	4240	14631	14689	22987	22987					0.06977725614706287
KVSDINISK	9	Unmodified	_KVSDINISK_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;PLCE1|p.P70Dfs*7|1|0.06|ENSG00000138193|chr10:94031253-94031254|-/GA|frameshift_variant;PLCE1|p.P70Lfs*8|1|0.04|ENSG00000138193|chr10:94031254-94031255|-/TAACA|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2934875488281	2	502.292756	1002.57096	3.5476	0.0017819	-3.1709	-0.0015927	0.37671	0.00018922	502.29121955476637	21.325	0.114	21.325	21.261	21.375	0					7	3	3	0	0	0	0.019316	1	6099	6099		117.53	16.066	1	165660			22662	4240	14631	14689	22988	22988					0.06977725614706287
KVSDINISK	9	Unmodified	_KVSDINISK_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;PLCE1|p.P70Dfs*7|1|0.06|ENSG00000138193|chr10:94031253-94031254|-/GA|frameshift_variant;PLCE1|p.P70Lfs*8|1|0.04|ENSG00000138193|chr10:94031254-94031255|-/TAACA|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.292724609375	2	502.292756	1002.57096	0.05356	2.6903E-05	-0.067808	-3.406E-05	-0.014248	-7.1569E-06	502.2925662086663	21.534	0.21849	21.534	21.424	21.642	0					10	4	3	0	0	0	0.0038186	1	7140	7140		171.33	22.64	1	1260500			22663	4240	14631	14689	22989	22989					0.06977725614706287
KVSDINISK	9	Unmodified	_KVSDINISK_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;PLCE1|p.P70Dfs*7|1|0.06|ENSG00000138193|chr10:94031253-94031254|-/GA|frameshift_variant;PLCE1|p.P70Lfs*8|1|0.04|ENSG00000138193|chr10:94031254-94031255|-/TAACA|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2932434082031	2	502.292756	1002.57096	-0.2826	-0.00014195	1.4143	0.00071041	1.1317	0.00056846	502.2933847861856	21.366	0.20482	21.366	21.311	21.516	0					5	4	2	0	0	0	0.066104	1	6190	6190		102.06	30.766	1	162530			22664	4240	14631	14689	22990	22990					0.06977725614706287
KVSDINISK	9	Unmodified	_KVSDINISK_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;PLCE1|p.P70Dfs*7|1|0.06|ENSG00000138193|chr10:94031253-94031254|-/GA|frameshift_variant;PLCE1|p.P70Lfs*8|1|0.04|ENSG00000138193|chr10:94031254-94031255|-/TAACA|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.29254150390625	2	502.292756	1002.57096	-0.51839	-0.00026039	0.52852	0.00026547	0.010127	5.0868E-06	502.29281555556355	21.497	0.11786	21.497	21.437	21.555	0					8	2	4	0	0	0	0.02042	1	7016	7016		136.52	37.502	1	1462900			22665	4240	14631	14689	22991	22991					0.06977725614706287
KVSDPTKLSK	10	Unmodified	_KVSDPTKLSK_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.8286743164062	2	551.826963	1101.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.453	1	17.453	16.953	17.953	0								0	0	0	0.028659	1	4928	4928		96.665	29.171	1				22666	1411	14632	14690	22992	22992					0.09261970194552305
KVSDSFSKE	9	Unmodified	_KVSDSFSKE_					0	0	0		ENST00000583270.1_1_18:46623573-46623861:-|nuORF	ENST00000583270.1_1_18:46623573-46623861:-|nuORF	ENST00000583270.1_1_18:46623573-46623861:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.7592163085938	2	513.758746	1025.50294	-1.6315	-0.00083818	1.8894	0.00097071	0.25796	0.00013253	513.7600010187941	25.234	0.22763	25.234	25.114	25.342	0					10	5	3	0	0	0	0.47038	1	8030	8030		35.618	0	1	73852			22667	10882	14633	14691	22993	22993					-0.00879144035934587
KVSDYILQH	9	Unmodified	_KVSDYILQH_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7989501953125	2	551.798206	1101.58186	1.3071	0.00072127	-0.3752	-0.00020703	0.93194	0.00051424	551.7980382685482	30.247	0.24472	30.247	30.132	30.377	0					11	8	2	0	0	0	0.24169	1	9615	9615		56.632	7.0962	1	113520			22668	4814	14634	14692	22994	22994					0.03513127989003806
KVSDYILQH	9	Unmodified	_KVSDYILQH_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7985229492188	2	551.798206	1101.58186	0.5927	0.00032705	-0.0028408	-1.5676E-06	0.58986	0.00032548	551.7981143856854	30.523	0.60509	30.523	30.311	30.916	0					33	14	3	0	0	0	0.02429	1	11020	11020		114.89	48.465	1	798250			22669	4814	14634	14692	22995	22995					0.03513127989003806
KVSDYILQH	9	Unmodified	_KVSDYILQH_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7982788085938	2	551.798206	1101.58186	1.6242	0.00089624	-1.1361	-0.00062688	0.48814	0.00026935	551.7971113873173	30.505	0.47607	30.505	30.306	30.782	0					15	10	2	0	0	0	0.037712	1	11425	11425		101.46	44.739	1	874760			22670	4814	14634	14692	22996	22996					0.03513127989003806
KVSDYILQH	9	Unmodified	_KVSDYILQH_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7992553710938	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.351	1	30.351	29.851	30.851	0								0	0	0	0.19847	1	10324	10324		51.193	5.2204	1				22671	4814	14634	14692	22997	22997					0.03513127989003806
KVSDYILQH	9	Unmodified	_KVSDYILQH_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.798583984375	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.489	1	30.489	29.989	30.989	0								0	0	0	0.010204	1	11293	11293		109.44	47.331	1				22672	4814	14634	14692	22998	22998					0.03513127989003806
KVSEFVASK	9	Unmodified	_KVSEFVASK_					0	0	0		nc|ENSG00000114626|Q969K4-2|ABTB1;ABTB1|p.P318Qfs*36|2|0.4|ENSG00000114626|chr3:127677762-127677762|C/-|frameshift_variant;ABTB1|p.E252Sfs*102|1|0.29|ENSG00000114626|chr3:127677272-127677272|C/-|frameshift_variant;nc|ENSG00000114626|Q969K4-4|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1	nc|ENSG00000114626|Q969K4-2|ABTB1	nc|ENSG00000114626|Q969K4-2|ABTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.78277587890625	2	497.782025	993.549496	3.3911	0.001688	-1.3858	-0.00068982	2.0053	0.00099823	497.78120774122226	20.158	0.11201	20.158	20.093	20.205	0					5	3	2	0	0	0	0.43488	1	5599	5599		38.754	4.832	1	69286			22673	26	14635	14693	22999	22999					0.05246340585995313
KVSEFVASK	9	Unmodified	_KVSEFVASK_					0	0	0		nc|ENSG00000114626|Q969K4-2|ABTB1;ABTB1|p.P318Qfs*36|2|0.4|ENSG00000114626|chr3:127677762-127677762|C/-|frameshift_variant;ABTB1|p.E252Sfs*102|1|0.29|ENSG00000114626|chr3:127677272-127677272|C/-|frameshift_variant;nc|ENSG00000114626|Q969K4-4|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1	nc|ENSG00000114626|Q969K4-2|ABTB1	nc|ENSG00000114626|Q969K4-2|ABTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7818298339844	2	497.782025	993.549496	-0.025918	-1.2901E-05	-0.29558	-0.00014714	-0.3215	-0.00016004	497.78184132005265	20.389	0.11681	20.389	20.28	20.396	0					6	2	3	0	0	0	0.11411	1	6589	6589		76.17	21.393	1	482480			22674	26	14635	14693	23000	23000					0.05246340585995313
KVSEFVASK	9	Unmodified	_KVSEFVASK_					0	0	0		nc|ENSG00000114626|Q969K4-2|ABTB1;ABTB1|p.P318Qfs*36|2|0.4|ENSG00000114626|chr3:127677762-127677762|C/-|frameshift_variant;ABTB1|p.E252Sfs*102|1|0.29|ENSG00000114626|chr3:127677272-127677272|C/-|frameshift_variant;nc|ENSG00000114626|Q969K4-4|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1	nc|ENSG00000114626|Q969K4-2|ABTB1	nc|ENSG00000114626|Q969K4-2|ABTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7817077636719	2	497.782025	993.549496	-0.71637	-0.0003566	0.42535	0.00021173	-0.29102	-0.00014487	497.7821355318515	20.352	0.1663	20.352	20.294	20.46	0					5	3	2	0	0	0	0.039418	1	6462	6462		99.788	31.001	1	320530			22675	26	14635	14693	23001	23001					0.05246340585995313
KVSGDIFSR	9	Unmodified	_KVSGDIFSR_					0	0	0		ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000488147.1_1_1:18362-24778:-|nuORF;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.77703857421875	2	504.777274	1007.53999	0.68401	0.00034527	-0.36689	-0.0001852	0.31711	0.00016007	504.7769728259817	26.196	0.19291	26.196	26.113	26.306	0					15	6	3	0	0	0	0.18416	1	7937	7937		63.534	10.597	1	159330			22676	6852	14636	14694	23002	23002					0.03652572300461543
KVSGDIFSR	9	Unmodified	_KVSGDIFSR_					0	0	0		ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000488147.1_1_1:18362-24778:-|nuORF;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7773742675781	2	504.777274	1007.53999	-0.34778	-0.00017555	-0.10646	-5.374E-05	-0.45424	-0.00022929	504.77711760212725	26.409	0.42353	26.409	26.298	26.722	0					15	8	3	0	0	0	0.12278	1	9338	9338		74.165	29.634	1	531560			22677	6852	14636	14694	23003	23003					0.03652572300461543
KVSGDIFSR	9	Unmodified	_KVSGDIFSR_					0	0	0		ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000488147.1_1_1:18362-24778:-|nuORF;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.77716064453125	2	504.777274	1007.53999	1.2166	0.00061413	-1.3362	-0.00067448	-0.11956	-6.0351E-05	504.7764717447417	26.392	0.42317	26.392	26.282	26.705	0					16	8	3	0	0	0	0.067603	1	9330	9330		89.029	30.799	1	1655200			22678	6852	14636	14694	23004	23004					0.03652572300461543
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.324951171875	2	530.324057	1058.63356	0.43334	0.00022981	0.31933	0.00016935	0.75267	0.00039916	530.3239494715956	16.379	0.10011	16.379	16.311	16.411	0					7	4	2	0	0	0	0.38016	1	3721	3721		51.528	12.275	1	68748			22679	3441	14637	14695	23005	23005					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.885009765625	3	353.88513	1058.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.642	1	16.642	16.142	17.142	0								0	0	0	0.045272	1	4551	4551		88.177	28.246	1				22680	3441	14637	14695	23006	23006					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.8851013183594	3	353.88513	1058.63356	3.6121	0.0012783	-3.2898	-0.0011642	0.32227	0.00011405	353.88387555988373	16.376	0.082808	16.376	16.334	16.417	0					5	3	2	0	0	0	0.21222	1	3922	3922		60.167	15.79	1	80078			22681	3441	14637	14695	23007	23007					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3245239257812	2	530.324057	1058.63356	-0.050457	-2.6759E-05	0.72233	0.00038307	0.67188	0.00035631	530.3243866315187	16.371	0.14742	16.371	16.295	16.443	0					10	5	3	0	0	0	0.0054332	1	3914	3914		164.46	74.085	1	324030			22682	3441	14637	14695	23008	23008					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.885009765625	3	353.88513	1058.63356	0.31715	0.00011224	-1.0048	-0.00035558	-0.68764	-0.00024335	353.884852360069	16.588	0.21578	16.588	16.48	16.696	0					5	4	2	0	0	0	0.15593	1	4779	4779		66.92	16.887	1	411830			22683	3441	14637	14695	23009	23009					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.3243408203125	2	530.324057	1058.63356	1.7296	0.00091726	-0.95935	-0.00050876	0.77028	0.0004085	530.3233630501885	16.571	0.16555	16.571	16.515	16.68	0					9	3	4	0	0	0	0.0068337	1	4770	4770		145.46	66.01	1	3138000			22684	3441	14637	14695	23010	23010					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.8853759765625	3	353.88513	1058.63356	0.43975	0.00015562	0.12924	4.5737E-05	0.56899	0.00020136	353.8850570139498	16.389	0.081076	16.389	16.349	16.43	0					4	2	2	0	0	0	0.19952	1	3881	3881		61.691	15.719	1	88165			22685	3441	14637	14695	23011	23011					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.3243408203125	2	530.324057	1058.63356	-1.2059	-0.0006395	1.9496	0.0010339	0.74372	0.00039441	530.3248499731601	16.399	0.15391	16.399	16.322	16.476	0					7	4	2	0	0	0	0.085309	1	3884	3884		76.17	11.962	1	243880			22686	3441	14637	14695	23012	23012					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.88507080078125	3	353.88513	1058.63356	-0.052517	-1.8585E-05	-0.28282	-0.00010009	-0.33534	-0.00011867	353.88507370044323	16.608	0.21482	16.608	16.499	16.714	0					9	4	3	0	0	0	0.099758	1	4640	4640		79.489	24.767	1	935280			22687	3441	14637	14695	23013	23013					0.10658871682880999
KVSLDFSQ	8	Unmodified	_KVSLDFSQ_					0	0	0			REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2451171875	2	462.245275	922.475997	0.7087	0.00032759	-0.86248	-0.00039868	-0.15377	-7.1081E-05	462.24457447417956	31.317	0.17373	31.317	31.211	31.385	0					8	4	3	0	0	0	0.65148	1	11411	11411		40.778	5.1599	1	107760	+		22688	12186	14638	14696	23014	23014					0.011657921435244134
KVSLLASCRQI	11	Unmodified	_KVSLLASCRQI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.23712158203125	3	406.572669	1216.69618	0.04739	1.9268E-05	-0.93694	-0.00038093	-0.88955	-0.00036167	406.5724515275038	19.487	0.757	19.487	18.984	19.741	0					21	10	3	0	0	0	0.73562	1	6038	6038		24.232	1.6522	1	16125000	+		22689	15602;22247	14639	14697	23015	23015					0.09649694479435311
KVSNKLRQQ	9	Unmodified	_KVSNKLRQQ_					0	0	0			REV__ENST00000487087.5_1_3:99569231-99569838:-|nuORF	REV__ENST00000487087.5_1_3:99569231-99569838:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8324584960938	2	550.830372	1099.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.7	1	14.7	14.2	15.2	0								0	0	0	0.31222	1	3072	3072		25.574	0	1		+		22690	19675	14640	14698	23016	23016					0.10035327865784893
KVSQNKMLK	9	Unmodified	_KVSQNKMLK_					0	0	0			REV__ENST00000551520.1_1_12:57108141-57108210:-|nuORF	REV__ENST00000551520.1_1_12:57108141-57108210:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3173217773438	2	538.318251	1074.62195	1.4642	0.00078821	-4.3706	-0.0023528	-2.9064	-0.0015646	538.3158723097475	26.982	0.22808	26.982	26.908	27.136	0					12	7	2	0	0	0	0.12239	1	8261	8261		74.255	0	1	133970	+		22691	20203	14641	14699	23017	23017					0.08762351387895251
KVSQVIMEK	9	Unmodified	_KVSQVIMEK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3051147460938	2	531.30481	1060.59507	-0.17321	-9.2029E-05	1.0807	0.0005742	0.90752	0.00048217	531.3052743577433	21.23	0.13384	21.23	21.157	21.291	0					10	4	3	0	0	0	0.095583	1	6049	6049		80.455	9.1589	1	243110			22692	5750	14642	14700	23018	23018					0.06719242776716783
KVSQVIMEK	9	Unmodified	_KVSQVIMEK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3049926757812	2	531.30481	1060.59507	1.7211	0.00091443	-1.6352	-0.00086879	0.085891	4.5634E-05	531.3040700795729	21.417	0.2179	21.417	21.357	21.575	0					14	4	5	0	0	0	0.0079272	1	7111	7111		145.46	49.427	1	1044100			22693	5750	14642	14700	23019	23019					0.06719242776716783
KVSQVIMEK	9	Unmodified	_KVSQVIMEK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.30517578125	2	531.30481	1060.59507	1.1794	0.0006266	-0.54148	-0.00028769	0.63788	0.00033891	531.3044117323416	21.303	0.11089	21.303	21.246	21.357	0					6	2	3	0	0	0	0.14578	1	6164	6164		68.846	2.4169	1	139740			22694	5750	14642	14700	23020	23020					0.06719242776716783
KVSQVIMEK	9	Unmodified	_KVSQVIMEK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.3050537109375	2	531.30481	1060.59507	-1.2332	-0.00065518	1.443	0.00076668	0.20985	0.0001115	531.3059252770526	21.286	0.11172	21.286	21.232	21.343	0					4	2	2	0	0	0	0.24169	1	6155	6155		56.632	5.2968	1	78412			22695	5750	14642	14700	23021	23021					0.06719242776716783
KVSQVIMEK	9	Unmodified	_KVSQVIMEK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.30517578125	2	531.30481	1060.59507	1.6944	0.00090026	-1.527	-0.00081128	0.16748	8.8985E-05	531.3042047708398	21.429	0.2179	21.429	21.321	21.539	0					10	4	4	0	0	0	0.031595	1	6987	6987		107.45	29.191	1	1233000			22696	5750	14642	14700	23022	23022					0.06719242776716783
KVSRDKDGSK	10	Unmodified	_KVSRDKDGSK_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.3111572265625	2	560.309469	1118.60439	1.2815	0.00071804	2.473	0.0013857	3.7545	0.0021037	560.3106839370856	26.94	0.22576	26.94	26.841	27.067	0					16	7	3	0	0	0	0.23612	1	8250	8250		75.043	6.2565	1	371340			22697	1682	14643	14701	23023	23023					0.04982727386618535
KVSRIIDE	8	Unmodified	_KVSRIIDE_					0	0	0			REV__ENSG00000099260|ENST00000263174|PALMD	REV__ENSG00000099260|ENST00000263174|PALMD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2791748046875	2	480.279649	958.544745	0.49945	0.00023988	-1.5006	-0.00072069	-1.0011	-0.00048082	480.27884100386586	15.368	0.18169	15.368	15.241	15.423	0					9	4	3	0	0	0	0.41701	1	3952	3952		68.787	3.3214	1	129550	+		22698	13489	14644	14702	23024	23024					0.06381456443227762
KVSRLECRGG	10	Unmodified	_KVSRLECRGG_					0	0	0		ENST00000508541.1_1_4:20618510-20620629:+|nuORF;nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2	ENST00000508541.1_1_4:20618510-20620629:+|nuORF	ENST00000508541.1_1_4:20618510-20620629:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8698425292969	3	368.869597	1103.58696	1.0643	0.00039258	-0.78421	-0.00028927	0.28008	0.00010331	368.86936736278085	39.638	0.9626	39.638	39.156	40.118	0					58	33	2	0	0	0	0.65895	1	15700	15700		27.047	1.4733	1	75916			22699	4656	14645	14703	23025	23025					0.039311085799454304
KVSSDLPQI	9	Unmodified	_KVSSDLPQI_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;NYNRIN|p.L483*|1|0.05|ENSG00000205978|chr14:24409238-24409238|C/-|frameshift_variant;NYNRIN|p.Q626Rfs*7|1|0.37|ENSG00000205978|chr14:24409667-24409667|C/-|frameshift_variant;NYNRIN|p.A1060Qfs*55|1|0.28|ENSG00000205978|chr14:24414924-24414924|G/-|frameshift_variant;NYNRIN|p.G1206Vfs*50|1|0.1|ENSG00000205978|chr14:24415362-24415362|G/-|frameshift_variant;NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7792663574219	2	493.779482	985.544411	0.88325	0.00043613	-1.4802	-0.00073087	-0.59691	-0.00029474	493.7788082784818	27.017	0.92363	27.017	26.788	27.712	0					45	18	3	0	0	0	0.21419	1	9573	9573		59.931	5.1545	1	691740			22700	7761	14646	14704	23026	23026					0.05106036723384477
KVSSKGRS	8	Unmodified	_KVSSKGRS_					0	0	0			REV__ZBED9|p.V1067Sfs*7|1|0.08|ENSG00000232040|chr6:28572690-28572691|-/T|frameshift_variant	REV__ZBED9|p.V1067Sfs*7|1|0.08|ENSG00000232040|chr6:28572690-28572691|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.75299072265625	2	424.751059	847.487565	3.3508	0.0014233	1.35	0.00057342	4.7008	0.0019967	424.75165403463495	30.002	0.25014	30.002	29.932	30.182	0					12	9	2	0	0	0	0.69548	1	9822	9822		34.173	0	1	55897	+		22701	22300	14647	14705	23027	23027					0.057720339575212165
KVSSVALCK	9	Unmodified	_KVSSVALCK_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7728271484375	2	467.773145	933.531738	0.31815	0.00014882	-0.96373	-0.00045081	-0.64559	-0.00030199	467.7725350651748	20.723	0.11385	20.723	20.668	20.782	0					4	2	2	0	0	0	0.25761	1	6487	6487		54.722	1.3709	1	114860			22702	7590	14648	14706	23028	23028					0.06231302059484278
KVSSVLLAK	9	Unmodified	_KVSSVLLAK_					0	0	0		ENST00000434558.5_1_1:156708347-156710981:-|nuORF;ENST00000420938.1_1_1:156708347-156710183:-|nuORF;ENST00000361531.6_1_1:156708347-156710822:-|nuORF;ENST00000368211.8_1_1:156708347-156710908:-|nuORF;ENST00000412846.5_3_1:156708347-156710822:-|nuORF	ENST00000434558.5_1_1:156708347-156710981:-|nuORF	ENST00000434558.5_1_1:156708347-156710981:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.810546875	2	472.810585	943.606617	0.64896	0.00030684	-0.99632	-0.00047107	-0.34736	-0.00016424	472.8100944476745	23.811	0.15873	23.811	23.704	23.863	0					5	3	2	0	0	0	0.085655	1	7922	7922		82.75	3.2995	1	207650			22703	8875	14649	14707	23029	23029					0.1325580786236742
KVSVGSESLV	10	Unmodified	_KVSVGSESLV_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2	REV__ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.77960205078125	2	502.784764	1003.55498	-0.89974	-0.00045237	-0.70306	-0.00035349	-1.6028	-0.00080586	502.7842738150159	27.248	0.43059	27.248	27.131	27.561	0					34	15	3	0	0	0	0.52707	1	8762	8762		42.396	11.892	1	476650	+		22704	13102	14650	14708	23030	23030					0.05334019377812638
KVSVQLGK	8	Unmodified	_KVSVQLGK_					0	0	0		nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1;nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.773681640625	2	429.774003	857.533452	1.0061	0.00043241	-1.1128	-0.00047826	-0.10669	-4.5854E-05	429.773460364085	18.609	0.16348	18.609	18.506	18.669	0					7	3	3	0	0	0	0.43813	1	5594	5594		66.429	0	1	623650			22705	4900	14651	14709	23031	23031					0.09898679139746491
KVSVSTQTK	9	Unmodified	_KVSVSTQTK_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2845764160156	2	489.284931	976.55531	0.77808	0.0003807	-1.4481	-0.00070855	-0.67005	-0.00032784	489.28429504803825	15.288	0.1008	15.288	15.241	15.342	0					4	2	2	0	0	0	0.41958	1	3931	3931		40.058	8.1033	1	61509			22706	1077	14652	14710	23032	23032					0.06609439097667291
KVSYKGSPA	9	Unmodified	_KVSYKGSPA_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7625427246094	2	468.761092	935.507631	0.26792	0.00012559	2.5393	0.0011903	2.8073	0.0013159	468.7624605694909	16.904	0.20956	16.904	16.82	17.029	0					10	5	3	0	0	0	0.071197	1	4683	4683		87.754	16.376	1	552890			22707	3515	14653	14711	23033	23033					0.037297848974731096
KVSYSHIQSK	10	Unmodified	_KVSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.8839416503906	3	392.8839	1175.62987	0.88732	0.00034862	-0.86873	-0.00034131	0.018593	7.3048E-06	392.8835534348806	16.541	0.18201	16.541	16.492	16.674	0					12	4	4	0	0	0	0.1998	1	4511	4511		100.82	42.573	1	660340			22708	1224	14654	14712	23034	23034					0.04908201909051968
KVSYSHIQSK	10	Unmodified	_KVSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	588.8235473632812	2	588.822212	1175.62987	-0.41703	-0.00024555	2.3045	0.001357	1.8875	0.0011114	588.8234511025446	16.302	0.071051	16.302	16.263	16.334	0					4	2	2	0	0	0	0.055558	1	3890	3890		107.45	30.137	1	122390			22709	1224	14654	14712	23035	23035					0.04908201909051968
KVSYSHIQSK	10	Unmodified	_KVSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.822509765625	2	588.822212	1175.62987	-1.7582	-0.0010353	2.1859	0.0012871	0.42767	0.00025182	588.8234700804709	16.326	0.092806	16.326	16.285	16.377	0					4	2	2	0	0	0	0.27396	1	3859	3859		70.412	22.452	1	121970			22710	1224	14654	14712	23036	23036					0.04908201909051968
KVSYSHIQSK	10	Unmodified	_KVSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.8837890625	3	392.8839	1175.62987	0.4485	0.00017621	-0.83975	-0.00032992	-0.39125	-0.00015372	392.8836340450042	16.541	0.21607	16.541	16.434	16.65	0					11	4	3	0	0	0	0.46989	1	4610	4610		60.691	26.19	1	1719300			22711	1224	14654	14712	23037	23037					0.04908201909051968
KVSYSHIQSK	10	Unmodified	_KVSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.8222045898438	2	588.822212	1175.62987	1.3612	0.00080152	-1.336	-0.00078665	0.025261	1.4874E-05	588.8214207362853	16.541	0.16552	16.541	16.434	16.6	0					6	3	2	0	0	0	0.24594	1	4614	4614		73.841	41.029	1	935310			22712	1224	14654	14712	23038	23038					0.04908201909051968
KVSYVAKG	8	Unmodified	_KVSYVAKG_					0	0	0			REV__MER65-int_dup829|chr19:41730434-41731149:+|4.724704930580082|0.0139534672083954|8.4|482.0|36|2|anti-sense	REV__MER65-int_dup829|chr19:41730434-41731149:+|4.724704930580082|0.0139534672083954|8.4|482.0|36|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.25299072265625	2	426.252903	850.491253	-0.71409	-0.00030438	0.70441	0.00030026	-0.0096806	-4.1264E-06	426.25317198217243	14.575	0.25477	14.575	14.522	14.777	0					11	6	2	0	0	0	0.37378	1	3588	3588		73.975	5.49	1	1158100	+		22713	20879	14655	14713	23039	23039					0.06002703731383008
KVTAAYLVGGA	11	Unmodified	_KVTAAYLVGGA_					0	0	0			REV__ENSG00000135622|ENST00000357877|SEMA4F	REV__ENSG00000135622|ENST00000357877|SEMA4F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.8046875	2	525.303124	1048.5917	1.9084	0.0010025	-3.5	-0.0018385	-1.5916	-0.00083607	525.8017698718073	38.666	0.23823	38.666	38.557	38.795	0					17	10	2	0	0	0	0.60656	1	14710	14710		36.447	2.2742	1	175290	+		22714	14814	14656	14714	23040	23040					0.06934315994362805
KVTDISGTK	9	Unmodified	_KVTDISGTK_					0	0	0		nc|ENSG00000163170|Q53S33-2|BOLA3;ENST00000469676.1_1_2:74362651-74373491:-|nuORF;ENST00000484655.1_1_2:74362651-74372610:-|nuORF	nc|ENSG00000163170|Q53S33-2|BOLA3	nc|ENSG00000163170|Q53S33-2|BOLA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7718200683594	2	474.771657	947.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.304	1	17.304	16.804	17.804	0								0	0	0	0.22284	1	4286	4286		47.657	1.7054	1				22715	9830	14657	14715	23041	23041					0.05289750206327426
KVTDPSVAK	9	Unmodified	_KVTDPSVAK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.77471923828125	2	472.7742	943.533846	0.64789	0.0003063	-0.90137	-0.00042615	-0.25348	-0.00011984	472.7737426444668	16.675	0.26379	16.675	16.464	16.728	0					15	6	3	0	0	0	0.15163	1	4522	4522		67.494	1.0644	1	226080			22716	7557	14658	14716	23042	23042					0.059820540689429436
KVTDPSVAK	9	Unmodified	_KVTDPSVAK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7739562988281	2	472.7742	943.533846	3.7376	0.0017671	-3.429	-0.0016211	0.30867	0.00014593	472.77263982270415	16.384	0.14666	16.384	16.27	16.417	0					8	5	2	0	0	0	0.48623	1	3910	3910		33.922	1.9668	1	86082			22717	7557	14658	14716	23043	23043					0.059820540689429436
KVTDPSVAK	9	Unmodified	_KVTDPSVAK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.77362060546875	2	472.7742	943.533846	-0.12257	-5.7947E-05	-0.59312	-0.00028041	-0.71569	-0.00033836	472.77391799699143	16.584	0.31639	16.584	16.38	16.696	0					15	6	3	0	0	0	0.02953	1	4737	4737		109.48	19.109	1	471830			22718	7557	14658	14716	23044	23044					0.059820540689429436
KVTDTASMK	9	Unmodified	_KVTDTASMK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7574768066406	2	490.757692	979.500831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.537	1	16.537	16.037	17.037	0								0	0	0	0.27521	1	4501	4501		40.058	5.8856	1				22719	3220	14659	14717	23045	23045					0.010261039545980566
KVTDTASMK	9	Unmodified	_KVTDTASMK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.75726318359375	2	490.757692	979.500831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.464	1	16.464	15.964	16.964	0								0	0	0	0.25045	1	4710	4710		43.651	1.2547	1				22720	3220	14659	14717	23046	23046					0.010261039545980566
KVTDVKKN	8	Unmodified	_KVTDVKKN_					0	0	0			REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2819519042969	2	466.282192	930.549831	-0.66887	-0.00031188	0.072216	3.3673E-05	-0.59666	-0.00027821	466.28224329584503	12.836	0.25587	12.836	12.711	12.967	0					13	7	3	0	0	0	0.3961	1	2789	2789		71.296	3.802	1	481060	+		22721	14400	14660	14718	23047	23047					0.08177760305841275
KVTDVKKN	8	Unmodified	_KVTDVKKN_					0	0	0			REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2826843261719	2	466.282192	930.549831	-0.91251	-0.00042549	1.3035	0.00060782	0.39103	0.00018233	466.2828059253714	12.582	0.052751	12.582	12.547	12.6	0					5	3	2	0	0	0	0.35045	1	2503	2503		76.774	7.1465	1	51274	+		22722	14400	14660	14718	23048	23048					0.08177760305841275
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.8148193359375	2	579.313689	1156.61282	1.4909	0.0008637	-1.4676	-0.00085017	0.02335	1.3527E-05	579.8136513027866	25.588	0.13354	25.588	25.524	25.658	0					7	4	2	0	0	0	0.5155	1	7720	7720		43.651	9.7292	1	72412			22723	1296	14661	14719	23049	23049					0.040782813032365084
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.313720703125	2	579.313689	1156.61282	0.74853	0.00043364	-0.59712	-0.00034592	0.15142	8.7719E-05	579.3133601483074	25.587	0.19422	25.587	25.514	25.708	0					15	6	3	0	0	0	0.019261	1	7703	7703		125.71	19.03	1	288360			22724	1296	14661	14719	23050	23050					0.040782813032365084
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.3141479492188	2	579.313689	1156.61282	-0.048937	-2.835E-05	0.55037	0.00031884	0.50144	0.00029049	579.3140383551536	25.871	0.43184	25.871	25.732	26.164	0					15	8	2	0	0	0	0.01518	1	8860	8860		128.6	11.076	1	1692300			22725	1296	14661	14719	23051	23051					0.040782813032365084
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.3138427734375	2	579.313689	1156.61282	-0.074241	-4.3009E-05	0.50704	0.00029374	0.4328	0.00025073	579.3139758086577	25.625	0.47378	25.625	25.531	26.005	0					28	11	4	0	0	0	0.00086381	1	7982	7982		183.72	70.31	1	1747600			22726	1296	14661	14719	23052	23052					0.040782813032365084
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.3137817382812	2	579.313689	1156.61282	1.609	0.00093214	-1.3356	-0.00077374	0.27343	0.0001584	579.3128760057143	25.877	0.7401	25.877	25.586	26.326	0					34	13	4	0	0	0	9.1369E-12	1	9203	9203		223.36	88.599	1	5248000			22727	1296	14661	14719	23053	23053					0.040782813032365084
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.314697265625	2	579.313689	1156.61282	0.57996	0.00033598	-0.081837	-4.7409E-05	0.49812	0.00028857	579.3136040069704	25.695	0.34613	25.695	25.57	25.916	0					16	6	4	0	0	0	0.0049346	1	8192	8192		166.07	34.455	1	1801900			22728	1296	14661	14719	23054	23054					0.040782813032365084
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.3140869140625	2	579.313689	1156.61282	1.7343	0.0010047	-1.4508	-0.00084046	0.28356	0.00016427	579.3128541395962	25.84	0.80053	25.84	25.498	26.298	0					34	14	3	0	0	0	0.0077833	1	9065	9065		154.01	24.59	1	2676300			22729	1296	14661	14719	23055	23055					0.040782813032365084
KVTEKVEK	8	Unmodified	_KVTEKVEK_					0	0	0			REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.78936767578125	2	480.78985	959.565146	-0.29847	-0.0001435	-0.27095	-0.00013027	-0.56941	-0.00027377	480.78957962630165	18.138	0.15893	18.138	18.05	18.209	0					6	3	2	0	0	0	0.69548	1	4693	4693		34.173	2.6427	1	149220	+		22730	21698	14662	14720	23056	23056					0.0837462710304635
KVTEQTQY	8	Unmodified	_KVTEQTQY_					0	0	0			REV__POLQ|p.K1535Nfs*4|1|0.38|ENSG00000051341|chr3:121488326-121488326|T/-|frameshift_variant	REV__POLQ|p.K1535Nfs*4|1|0.38|ENSG00000051341|chr3:121488326-121488326|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7532043457031	2	498.753464	995.492375	-1.0803	-0.00053879	-0.49414	-0.00024645	-1.5744	-0.00078524	498.7539130015103	25.892	0.30894	25.892	25.724	26.033	0					14	6	3	0	0	0	0.26534	1	8081	8081		94.006	11.701	1	770190	+		22731	13035	14663	14721	23057	23057					-0.005551266903921714
KVTERWKL	8	Unmodified	_KVTERWKL_					0	0	0			REV__ENST00000396472.5_1_14:35550357-35550390:+|nuORF	REV__ENST00000396472.5_1_14:35550357-35550390:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3206176757812	2	530.319109	1058.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.149	1	15.149	14.649	15.649	0								0	0	0	1.7419	1	3930	3930		30.504	1.3541	1		+		22732	18899	14664	14722	23058	23058					0.09669728468179528
KVTEWAKAR	9	Unmodified	_KVTEWAKAR_					0	0	0			REV__ENST00000378097.5_1_1:6160202-6160340:+|nuORF	REV__ENST00000378097.5_1_1:6160202-6160340:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.8163452148438	2	544.81419	1087.61383	1.9658	0.001071	1.3359	0.00072781	3.3017	0.0017988	544.8152540461773	13.758	0.30928	13.758	13.605	13.914	0					14	6	3	0	0	0	0.44593	1	3284	3284		37.812	3.639	1	162630	+		22733	18741	14665	14723	23059	23059					0.07352540462784418
KVTGKVADL	9	Unmodified	_KVTGKVADL_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.78466796875	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.577	1	19.577	19.077	20.077	0								0	0	0	0.33029	1	5343	5343		29.17	1.2878	1		+		22734	13398	14666	14724	23060	23060					0.08698644448600135
KVTKDKSNK	9	Unmodified	_KVTKDKSNK_					0	0	0		nc|ENSG00000288460|A0A5F9ZH02|SMIM42	nc|ENSG00000288460|A0A5F9ZH02|SMIM42	nc|ENSG00000288460|A0A5F9ZH02|SMIM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.3139038085938	2	524.31148	1046.60841	5.3414	0.0028006	-0.60437	-0.00031688	4.7371	0.0024837	524.311092938515	24.028	0.41639	24.028	23.884	24.301	0					41	13	5	0	0	0	0.0406	1	7257	7257		98.629	10.875	1	3730800			22735	11825	14667	14725	23061	23061					0.08696816880319602
KVTLAEQDP	9	Unmodified	_KVTLAEQDP_					0	0	0		ENSG00000146707|ENST00000310842|POMZP3;nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENSG00000146707|ENST00000310842|POMZP3	ENSG00000146707|ENST00000310842|POMZP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7769775390625	2	500.769114	999.523675	1.1109	0.0005563	0.93444	0.00046794	2.0453	0.0010242	500.76847476048533	32.76	0.46623	32.76	32.506	32.972	0					25	9	4	0	0	0	0.25716	1	12304	12304		54.776	12.302	1	2123700			22736	4742	14668	14726	23062	23062					0.023894463437045488
KVTLASKGAG	10	Unmodified	_KVTLASKGAG_					0	0	0			REV__ENSG00000103710|ENST00000220062|RASL12	REV__ENSG00000103710|ENST00000220062|RASL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.281982421875	2	466.282192	930.549831	0.65583	0.0003058	-0.81758	-0.00038122	-0.16175	-7.542E-05	466.2817600816532	12.782	0.28943	12.782	12.688	12.978	0					10	6	2	0	0	0	0.11308	1	2815	2815		93.143	5.3889	1	377850	+		22737	13695	14669	14727	23063	23063					0.08177760305852644
KVTLRRYD	8	Unmodified	_KVTLRRYD_					0	0	0		ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant;ENSG00000197013|ENST00000358491|ZNF429	ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant	ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8059692382812	2	525.806365	1049.59818	1.6273	0.00085563	-2.632	-0.0013839	-1.0047	-0.00052829	525.804876214176	13.249	0.34169	13.249	13.095	13.437	0					14	7	3	0	0	0	0.70598	1	3038	3038		32.812	3.6629	1	708240			22738	7414	14670	14728	23064	23064					0.07536253945750104
KVTPNTVLENF	11	Unmodified	_KVTPNTVLENF_					0	0	0		ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.342529296875	2	631.342978	1260.6714	0.19644	0.00012402	-0.22332	-0.00014099	-0.026882	-1.6972E-05	631.3429642950758	31.994	0.31278	31.994	31.839	32.151	0					27	12	3	0	0	0	0.77123	1	10280	10280		20.837	0.84038	1	140260			22739	5079	14671	14729	23065	23065					0.05149337877674043
KVTSGLLIRG	10	Unmodified	_KVTSGLLIRG_					0	0	0		ENST00000586719.5_1_19:12883476-12885666:-|nuORF;ENST00000589965.5_1_19:12876298-12886263:-|nuORF;ENST00000589134.5_1_19:12885194-12886263:-|nuORF;ENST00000590839.5_1_19:12883046-12889158:-|nuORF	ENST00000586719.5_1_19:12883476-12885666:-|nuORF	ENST00000586719.5_1_19:12883476-12885666:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.55718994140625	3	348.557236	1042.64988	-0.70268	-0.00024492	0.56891	0.0001983	-0.13377	-4.6626E-05	348.55736942442604	16.039	0.098329	16.039	15.997	16.096	0					5	3	2	0	0	0	0.63224	1	3778	3778		22.562	0	1	129980			22740	10905	14672	14730	23066	23066					0.13025997639647358
KVTSPNRLK	9	Unmodified	_KVTSPNRLK_					0	0	0			REV__ENST00000381918.3_1_5:36686318-36686381:+|nuORF	REV__ENST00000381918.3_1_5:36686318-36686381:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.3233032226562	2	521.822015	1041.62948	0.79908	0.00041698	-0.35466	-0.00018507	0.44442	0.00023191	521.8219431769736	20.259	0.069019	20.259	20.208	20.277	0					4	2	2	0	0	0	0.30257	1	5388	5388		51.193	3.5354	1	59559	+		22741	18790	14673	14731	23067	23067					0.110328269798174
KVTSVLVAK	9	Unmodified	_KVTSVLVAK_					0	0	0			REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.8105163574219	2	472.810585	943.606617	-0.12254	-5.7937E-05	-0.21928	-0.00010368	-0.34182	-0.00016161	472.810406875642	23.72	0.1676	23.72	23.612	23.779	0					6	3	2	0	0	0	0.38666	1	8224	8224		42.864	6.4175	1	128760	+		22742	21740	14674	14732	23068	23068					0.13255807862378788
KVTSVQKK	8	Unmodified	_KVTSVQKK_					0	0	0		ENST00000502083.2_1_8:22865326-22865587:-|nuORF	ENST00000502083.2_1_8:22865326-22865587:-|nuORF	ENST00000502083.2_1_8:22865326-22865587:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2921447753906	2	459.292559	916.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.37	1	12.37	11.87	12.87	0								0	0	0	1.7419	1	2588	2588		74.255	0	1				22743	10150	14675	14733	23069	23069					0.10894350685521204
KVTTSITSK	9	Unmodified	_KVTTSITSK_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.78729248046875	2	482.787307	963.560061	0.57796	0.00027903	-1.0245	-0.00049461	-0.44653	-0.00021558	482.78688971121977	16.983	0.32445	16.983	16.705	17.029	0					10	8	2	0	0	0	0.19556	1	4721	4721		72.243	24.328	1	502400			22744	1670	14676	14734	23070	23070					0.07682323240408095
KVTTSITSK	9	Unmodified	_KVTTSITSK_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.78692626953125	2	482.787307	963.560061	-0.10113	-4.8824E-05	-0.48986	-0.0002365	-0.59099	-0.00028532	482.78712579298906	16.921	0.11726	16.921	16.863	16.98	0					4	2	2	0	0	0	0.23738	1	4945	4945		66.962	11.458	1	141310			22745	1670	14676	14734	23071	23071					0.07682323240408095
KVTTSITSK	9	Unmodified	_KVTTSITSK_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7870178222656	2	482.787307	963.560061	-0.60681	-0.00029296	0.18046	8.7122E-05	-0.42635	-0.00020584	482.78736128104646	16.9	0.20976	16.9	16.747	16.957	0					7	4	3	0	0	0	0.093587	1	4784	4784		83.647	20.113	1	341860			22746	1670	14676	14734	23072	23072					0.07682323240408095
KVTTVLATK	9	Unmodified	_KVTTVLATK_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.80743408203125	2	480.808042	959.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.433	1	20.433	19.933	20.933	0								0	0	0	0.27521	1	6338	6338		40.058	14.484	1				22747	1232	14677	14735	23073	23073					0.12011503999758588
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.8815612792969	3	338.88172	1013.62333	0.3721	0.0001261	-0.047209	-1.5998E-05	0.32489	0.0001101	338.88162361711477	16.781	0.10818	16.781	16.719	16.828	0					9	4	3	0	0	0	0.14578	1	3882	3882		68.846	10.616	1	309180			22748	2285	14678	14736	23074	23074					0.1170630874833023
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.8193359375	2	507.818941	1013.62333	-0.094197	-4.7835E-05	-0.12194	-6.1925E-05	-0.21614	-0.00010976	507.81887463336267	16.776	0.15284	16.776	16.712	16.865	0					16	6	4	0	0	0	0.033932	1	3876	3876		109.44	26.688	1	665160			22749	2285	14678	14736	23075	23075					0.1170630874833023
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8188171386719	2	507.818941	1013.62333	-0.028973	-1.4713E-05	-0.15133	-7.6849E-05	-0.1803	-9.1562E-05	507.81882500043923	17.097	0.25542	17.097	17.007	17.262	0					17	6	4	0	0	0	6.4458E-05	1	4752	4752		204.42	50.306	1	6438400			22750	2285	14678	14736	23076	23076					0.1170630874833023
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.8189697265625	2	507.818941	1013.62333	-0.50797	-0.00025796	0.55384	0.00028125	0.04587	2.3294E-05	507.81920466071665	16.847	0.10709	16.847	16.762	16.869	0					9	4	3	0	0	0	0.14673	1	4111	4111		61.691	5.2575	1	357730			22751	2285	14678	14736	23077	23077					0.1170630874833023
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8187255859375	2	507.818941	1013.62333	-0.38278	-0.00019438	-0.10444	-5.3039E-05	-0.48722	-0.00024742	507.81887339980864	17.038	0.16869	17.038	16.98	17.149	0					10	3	4	0	0	0	9.6874E-06	1	4999	4999		204.42	50.306	1	1425800			22752	2285	14678	14736	23078	23078					0.1170630874833023
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.8818359375	3	338.88172	1013.62333	0.52352	0.00017741	-0.18699	-6.3366E-05	0.33654	0.00011405	338.88164867387826	16.867	0.099781	16.867	16.817	16.917	0					4	2	2	0	0	0	0.02429	1	4095	4095		114.89	36.631	1	334820			22753	2285	14678	14736	23079	23079					0.1170630874833023
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.88140869140625	3	338.88172	1013.62333	-0.050607	-1.715E-05	-0.3457	-0.00011715	-0.39631	-0.0001343	338.88157073412424	16.891	0.093758	16.891	16.806	16.9	0					4	2	2	0	0	0	0.19952	1	4093	4093		61.691	6.9689	1	87166			22754	2285	14678	14736	23080	23080					0.1170630874833023
KVVDLANKK	9	Unmodified	_KVVDLANKK_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.88165283203125	3	338.88172	1013.62333	-0.020295	-6.8777E-06	-0.13906	-4.7124E-05	-0.15935	-5.4002E-05	338.8816643724983	17.047	0.21823	17.047	16.94	17.158	0					13	4	4	0	0	0	0.021015	1	4831	4831		120.31	39.851	1	3414500			22755	2285	14678	14736	23081	23081					0.1170630874833023
KVVDPFSK	8	Unmodified	_KVVDPFSK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2657165527344	2	460.26601	918.517468	0.1337	6.1539E-05	-0.65131	-0.00029978	-0.51761	-0.00023824	460.2657888432643	26.439	0.26427	26.439	26.259	26.523	0					13	6	3	0	0	0	0.50061	1	9105	9105		60.118	2.307	1	88312			22756	4672	14679	14737	23082	23082					0.054949729028635375
KVVDPFSK	8	Unmodified	_KVVDPFSK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2658996582031	2	460.26601	918.517468	-0.15348	-7.0642E-05	-0.08491	-3.9081E-05	-0.23839	-0.00010972	460.2660481309409	26.435	0.26645	26.435	26.277	26.543	0					8	5	2	0	0	0	0.59714	1	9450	9450		49.536	7.1399	1	155150			22757	4672	14679	14737	23083	23083					0.054949729028635375
KVVDRWNEK	9	Unmodified	_KVVDRWNEK_					0	0	0		ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.3251342773438	2	587.32238	1172.63021	-0.36199	-0.00021261	2.7989	0.0016439	2.437	0.0014313	587.3244362786261	18.779	0.068333	18.779	18.734	18.802	0					4	2	2	0	0	0	0.28897	1	4972	4972		51.193	10.415	1	41029			22758	2678	14680	14738	23084	23084					0.0507962162887452
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.3019409179688	2	533.300581	1064.58661	1.0689	0.00057003	-0.008205	-4.3758E-06	1.0607	0.00056566	533.3004769744191	22.696	0.29915	22.696	22.628	22.928	0					19	9	4	0	0	0	3.4569E-05	1	6449	6449		199.7	50.718	1	924140			22759	2544	14681	14739	23085	23085					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.3008422851562	2	533.300581	1064.58661	2.3211	0.0012379	-1.7336	-0.00092451	0.58756	0.00031334	533.2994804806353	23.01	0.77017	23.01	22.846	23.616	0					41	18	5	0	0	0	3.5882E-08	1	7549	7549		214.23	65.244	1	9533400			22760	2544	14681	14739	23086	23086					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.3008422851562	2	533.300581	1064.58661	-0.42031	-0.00022415	1.5063	0.0008033	1.086	0.00057915	533.3013251775609	22.727	0.25305	22.727	22.661	22.914	0					20	9	3	0	0	0	0.035106	1	6724	6724		104.01	18.152	1	457340			22761	2544	14681	14739	23087	23087					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.30078125	2	533.300581	1064.58661	1.0995	0.00058636	-0.55349	-0.00029517	0.54602	0.00029119	533.3002546666902	22.919	0.16675	22.919	22.811	22.978	0					8	3	3	0	0	0	0.0067848	1	7836	7836		150.36	43.354	1	485450			22762	2544	14681	14739	23088	23088					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.3009033203125	2	533.300581	1064.58661	1.739	0.00092743	-0.89089	-0.00047511	0.84816	0.00045232	533.3000356846758	22.903	0.51885	22.903	22.693	23.212	0					24	10	4	0	0	0	0.00026591	1	7827	7827		190.26	41.275	1	2695800			22763	2544	14681	14739	23089	23089					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.3016967773438	2	533.300581	1064.58661	2.0252	0.00108	-0.69649	-0.00037144	1.3287	0.00070858	533.3001073889321	22.803	0.19334	22.803	22.706	22.899	0					9	4	3	0	0	0	0.0023831	1	6843	6843		172.25	48.168	1	642180			22764	2544	14681	14739	23090	23090					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.3015747070312	2	533.300581	1064.58661	1.1287	0.00060194	-0.059888	-3.1938E-05	1.0688	0.00057	533.3005185480175	22.786	0.2289	22.786	22.694	22.923	0					16	5	4	0	0	0	0.017421	1	6839	6839		126.24	30.427	1	867680			22765	2544	14681	14739	23091	23091					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.30078125	2	533.300581	1064.58661	0.71521	0.00038142	-0.094512	-5.0403E-05	0.6207	0.00033102	533.3004192954056	22.898	0.41185	22.898	22.789	23.201	0					22	8	4	0	0	0	7.7249E-13	1	7693	7693		229.33	53.24	1	4594800			22766	2544	14681	14739	23092	23092					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.3009033203125	2	533.300581	1064.58661	1.7869	0.00095294	-1.1081	-0.00059095	0.67878	0.00036199	533.2998423446049	22.931	0.91382	22.931	22.622	23.535	0					38	18	5	0	0	0	3.5882E-08	1	7686	7686		214.23	65.244	1	8771500			22767	2544	14681	14739	23093	23093					0.05690012131753974
KVVDVIGTK	9	Unmodified	_KVVDVIGTK_					0	0	0		ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7996826171875	2	479.800217	957.585882	-0.1128	-5.412E-05	-1.0265	-0.00049252	-1.1393	-0.00054664	479.79981715961986	23.174	0.11794	23.174	23.111	23.229	0					6	2	3	0	0	0	0.12834	1	7957	7957		72.879	9.3454	1	217740			22768	958	14682	14740	23094	23094					0.10539217482710228
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.3248291015625	2	578.324057	1154.63356	1.4873	0.00086011	-0.45503	-0.00026315	1.0322	0.00059696	578.3236585235152	26.788	0.13962	26.788	26.75	26.89	0					9	5	2	0	0	0	0.15441	1	8192	8192		102.06	24.744	1	84240			22769	7661	14683	14741	23095	23095					0.062428716828890174
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.3248901367188	2	578.324057	1154.63356	1.4786	0.0008551	-0.66533	-0.00038478	0.81325	0.00047032	578.3235648097221	27.013	0.29409	27.013	26.927	27.221	0					19	7	4	0	0	0	0.031797	1	9397	9397		125.68	65.564	1	846250			22770	7661	14683	14741	23096	23096					0.062428716828890174
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.32421875	2	578.324057	1154.63356	-0.036849	-2.1311E-05	0.57364	0.00033175	0.53679	0.00031044	578.3243432325661	26.799	0.20671	26.799	26.734	26.941	0					16	7	3	0	0	0	0.37253	1	8460	8460		72.243	17.467	1	241800			22771	7661	14683	14741	23097	23097					0.062428716828890174
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.8259887695312	2	578.324057	1154.63356	0.58526	0.00033847	-0.10378	-6.0017E-05	0.48148	0.00027845	578.3240326384393	26.868	0.17104	26.868	26.776	26.947	0					10	4	3	0	0	0	0.40897	1	8704	8704		66.92	26.142	1	250470			22772	7661	14683	14741	23098	23098					0.062428716828890174
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.32421875	2	578.324057	1154.63356	-1.6468	-0.0009524	2.5698	0.0014862	0.92298	0.00053378	578.3255337484096	26.861	0.17237	26.861	26.764	26.936	0					7	4	2	0	0	0	0.27396	1	8717	8717		66.962	24.098	1	173940			22773	7661	14683	14741	23099	23099					0.062428716828890174
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.3248291015625	2	578.324057	1154.63356	1.7218	0.00099579	-0.72792	-0.00042097	0.99393	0.00057482	578.3235560980655	26.994	0.37025	26.994	26.885	27.255	0					20	7	4	0	0	0	0.0085055	1	9618	9618		174.86	73.612	1	2114900			22774	7661	14683	14741	23100	23100					0.062428716828890174
KVVEREEAVP	10	Unmodified	_KVVEREEAVP_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.3243408203125	2	578.322045	1154.62954	3.2621	0.0018865	0.76091	0.00044005	4.023	0.0023266	578.3224383980498	26.976	0.37007	26.976	26.919	27.289	0					14	7	2	0	0	0	0.080628	1	9611	9611		122.18	12.056	1	1278200			22775	1630	14684	14742	23101	23101					0.05840782189170568
KVVFPRVAQ	9	Unmodified	_KVVFPRVAQ_					0	0	0		SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A;ENST00000510024.5_1_5:115822443-115824680:-|nuORF	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.3228149414062	2	522.321651	1042.62875	0.81345	0.00042488	3.0775	0.0016074	3.891	0.0020323	522.323449463919	30.675	0.22188	30.675	30.605	30.827	0					15	9	2	0	0	0	0.38666	1	9818	9818		44.117	0	1	93719			22776	1874	14685	14743	23102	23102					0.10914032330788359
KVVGIFPIFK	10	Unmodified	_KVVGIFPIFK_					0	0	0			REV__ENSG00000175115|ENST00000320580|PACS1	REV__ENSG00000175115|ENST00000320580|PACS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.2449951171875	3	383.24611	1146.7165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.585	1	26.585	26.085	27.085	0								0	0	0	0.38475	1	9189	9189		35.152	5.6013	1		+		22777	16603	14686	14744	23103	23103					0.14901233201567265
KVVKLHTKL	9	Unmodified	_KVVKLHTKL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.3623046875	2	533.360776	1064.707	0.71524	0.00038148	0.70264	0.00037476	1.4179	0.00075624	533.3608475933524	12.886	0.15677	12.886	12.79	12.947	0					6	3	2	0	0	0	0.48623	1	2848	2848		26.693	0	1	58034			22778	1288	14687	14745	23104	23104					0.17723464916025478
KVVKSNKP	8	Unmodified	_KVVKSNKP_					0	0	0			REV__SLC6A15|p.F116Sfs*21|3|0.16|ENSG00000072041|chr12:84886011-84886011|A/-|frameshift_variant	REV__SLC6A15|p.F116Sfs*21|3|0.16|ENSG00000072041|chr12:84886011-84886011|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2868957519531	2	450.287277	898.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.981	1	11.981	11.481	12.481	0								0	0	0	1.7419	1	2440	2440		51.335	1.3109	1		+		22779	13188	14688	14746	23105	23105					0.10666368031081674
KVVKVTIMK	9	Unmodified	_KVVKVTIMK_					0	0	0		ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant;ZCRB1|p.W185Mfs*13|2|0.39|ENSG00000139168|chr12:42313168-42313169|-/T|frameshift_variant;ENSG00000139168|ENST00000266529|ZCRB1	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.34423828125	2	523.343738	1044.67292	1.7162	0.00089815	-1.2132	-0.00063492	0.50297	0.00026323	523.3431651353463	21.784	0.18491	21.784	21.696	21.881	0					10	4	3	0	0	0	0.13109	1	6989	6989		75.043	14.925	1	577480			22780	4310	14689	14747	23106	23106					0.15237300432772827
KVVKVTIMK	9	Unmodified	_KVVKVTIMK_					0	0	0		ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant;ZCRB1|p.W185Mfs*13|2|0.39|ENSG00000139168|chr12:42313168-42313169|-/T|frameshift_variant;ENSG00000139168|ENST00000266529|ZCRB1	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.2315673828125	3	349.231584	1044.67292	0.49818	0.00017398	-0.80575	-0.00028139	-0.30757	-0.00010741	349.2314275536501	21.776	0.14156	21.776	21.682	21.823	0					10	3	4	0	0	0	0.48623	1	6981	6981		33.922	5.8401	1	545240			22781	4310	14689	14747	23107	23107					0.15237300432772827
KVVKVTIMK	9	Unmodified	_KVVKVTIMK_					0	0	0		ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant;ZCRB1|p.W185Mfs*13|2|0.39|ENSG00000139168|chr12:42313168-42313169|-/T|frameshift_variant;ENSG00000139168|ENST00000266529|ZCRB1	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3438110351562	2	523.343738	1044.67292	1.0359	0.00054213	-0.72695	-0.00038045	0.30894	0.00016168	523.3433551467677	21.683	0.2174	21.683	21.575	21.793	0					6	4	2	0	0	0	0.017741	1	7237	7237		120.87	30.499	1	371870			22782	4310	14689	14747	23108	23108					0.15237300432772827
KVVKVTIMK	9	Unmodified	_KVVKVTIMK_					0	0	0		ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant;ZCRB1|p.W185Mfs*13|2|0.39|ENSG00000139168|chr12:42313168-42313169|-/T|frameshift_variant;ENSG00000139168|ENST00000266529|ZCRB1	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.2315368652344	3	349.231584	1044.67292	1.4552	0.00050819	-1.4612	-0.00051031	-0.006048	-2.1121E-06	349.2310711144135	21.666	0.16718	21.666	21.558	21.725	0					7	3	3	0	0	0	0.13109	1	7234	7234		72.243	20.715	1	517870			22783	4310	14689	14747	23109	23109					0.15237300432772827
KVVKVTIMK	9	Unmodified	_KVVKVTIMK_					0	0	0		ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant;ZCRB1|p.W185Mfs*13|2|0.39|ENSG00000139168|chr12:42313168-42313169|-/T|frameshift_variant;ENSG00000139168|ENST00000266529|ZCRB1	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3440551757812	2	523.343738	1044.67292	0.47682	0.00024954	0.012174	6.3711E-06	0.48899	0.00025591	523.3439302433823	21.645	0.16837	21.645	21.587	21.755	0					8	3	3	0	0	0	0.039418	1	7091	7091		93.598	28.132	1	365890			22784	4310	14689	14747	23110	23110					0.15237300432772827
KVVNLPFEK	9	Unmodified	_KVVNLPFEK_					0	0	0		ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.3214111328125	2	537.321317	1072.62808	0.042939	2.3072E-05	-0.13426	-7.2138E-05	-0.091317	-4.9066E-05	537.3212290087314	29.086	0.12919	29.086	28.978	29.107	0					6	5	2	0	0	0	0.5924	1	9442	9442		28.081	13.944	1	43915			22785	11067	14690	14748	23111	23111					0.09467192891065679
KVVNLPFEK	9	Unmodified	_KVVNLPFEK_					0	0	0		ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3218383789062	2	537.321317	1072.62808	0.29371	0.00015782	-0.022306	-1.1985E-05	0.27141	0.00014583	537.3215386730959	29.326	0.33004	29.326	29.129	29.459	0					12	7	2	0	0	0	0.19891	1	10813	10813		72.879	5.3856	1	107930			22786	11067	14690	14748	23112	23112					0.09467192891065679
KVVNLPFEK	9	Unmodified	_KVVNLPFEK_					0	0	0		ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3218994140625	2	537.321317	1072.62808	1.0305	0.0005537	-0.11118	-5.9738E-05	0.91931	0.00049396	537.3212337838914	29.133	0.42797	29.133	28.923	29.351	0					28	11	3	0	0	0	0.039418	1	9719	9719		114.89	16.313	1	546670			22787	11067	14690	14748	23113	23113					0.09467192891065679
KVVNPLFEK	9	Unmodified	_KVVNPLFEK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3214111328125	2	537.321317	1072.62808	1.3971	0.00075067	-0.40336	-0.00021674	0.9937	0.00053394	537.3210506547993	29.067	0.39706	29.067	28.88	29.277	0					31	14	3	0	0	0	0.034688	1	9100	9100		98.582	0	1	255030			22788	4819;9354	14691	14749	23114	23114					0.09467192891065679
KVVNPLFEK	9	Unmodified	_KVVNPLFEK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3218383789062	2	537.321317	1072.62808	0.21493	0.00011549	0.666	0.00035785	0.88093	0.00047334	537.3216999754973	29.35	0.45628	29.35	29.157	29.614	0					21	11	3	0	0	0	0.24169	1	10465	10465		67.494	0	1	202900			22789	4819;9354	14691	14749	23115	23115					0.09467192891065679
KVVPFGLVGK	10	Unmodified	_KVVPFGLVGK_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.55731201171875	3	348.558577	1042.6539	-1.9789	-0.00068977	-1.466	-0.00051098	-3.4449	-0.0012008	348.5580786709357	16.065	0.13971	16.065	16.014	16.154	0					5	4	2	0	0	0	0.41384	1	3735	3735		54.722	7.065	1	190760	+		22790	15204	14692	14750	23116	23116					0.13428087133365807
KVVRNRSR	8	Unmodified	_KVVRNRSR_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000479856.1_1_17:8464744-8464891:+|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.81878662109375	2	507.817599	1013.62064	2.9534	0.0014998	-0.42904	-0.00021788	2.5244	0.0012819	507.8174563592626	17.013	0.31954	17.013	16.957	17.276	0					16	6	5	0	0	0	0.25873	1	4839	4839		85.359	85.359	1	3718000			22791	7492	14693	14751	23117	23117					0.1143789813403373
KVVTEQGA	8	Unmodified	_KVVTEQGA_					0	0	0		YWHAQ|p.A28V|1|0.45|ENSG00000134308|chr2:9630370-9630370|G/A|missense_variant	YWHAQ|p.A28V|1|0.45|ENSG00000134308|chr2:9630370-9630370|G/A|missense_variant	YWHAQ|p.A28V|1|0.45|ENSG00000134308|chr2:9630370-9630370|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.2317810058594	2	416.232168	830.449782	0.49644	0.00020663	-1.0047	-0.00041817	-0.50823	-0.00021154	416.2316751567286	18.278	0.27924	18.278	18.182	18.461	0					11	6	2	0	0	0	0.43813	1	5325	5325		66.429	7.6473	1	450450			22792	23122	14694	14752	23118	23118					0.027775229720418793
KVVTVHLEK	9	Unmodified	_KVVTVHLEK_					0	0	0		ENSG00000090273|ENST00000321265|NUDC;ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENSG00000090273|ENST00000321265|NUDC;ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.5533447265625	3	351.553603	1051.63898	0.49486	0.00017397	-0.57194	-0.00020107	-0.07708	-2.7098E-05	351.55338515136356	13.621	0.4142	13.621	13.33	13.744	0					20	11	3	0	0	0	0.5879	1	3118	3118		23.523	2.6855	1	692240			22793	1831;9537	14695	14753	23119	23119					0.11522595265364544
KVVVGIPDF	9	Unmodified	_KVVVGIPDF_					0	0	0		ENST00000430024.5_1_19:12251056-12253521:-|nuORF	ENST00000430024.5_1_19:12251056-12253521:-|nuORF	ENST00000430024.5_1_19:12251056-12253521:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2904968261719	2	487.289485	972.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.672	1	42.672	42.172	43.172	0								0	0	0	0.28996	1	16738	16738		37.159	1.5408	1				22794	9482	14696	14754	23120	23120					0.0770383245398989
KVVVSPTK	8	Unmodified	_KVVVSPTK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2760314941406	2	429.276378	856.538203	0.20799	8.9287E-05	-0.87231	-0.00037446	-0.66432	-0.00028518	429.275935635511	16.15	0.18387	16.15	16.057	16.241	0					13	8	2	0	0	0	0.41	1	3628	3628		69.628	0.8408	1	160520			22795	2879	14697	14755	23121	23121					0.10419563282505351
KVVVSPTK	8	Unmodified	_KVVVSPTK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2767028808594	2	429.276378	856.538203	0.24385	0.00010468	0.40438	0.00017359	0.64824	0.00027827	429.27650249581944	16.473	0.18686	16.473	16.375	16.562	0					7	4	2	0	0	0	0.32597	1	4480	4480		79.713	5.7379	1	91454			22796	2879	14697	14755	23122	23122					0.10419563282505351
KVVVSPTK	8	Unmodified	_KVVVSPTK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.27606201171875	2	429.276378	856.538203	-0.51743	-0.00022212	-0.021303	-9.145E-06	-0.53874	-0.00023127	429.2763465580166	16.439	0.26633	16.439	16.28	16.547	0					14	5	4	0	0	0	0.26369	1	4684	4684		141.52	26.061	1	2148800			22797	2879	14697	14755	23123	23123					0.10419563282505351
KVVVSPTK	8	Unmodified	_KVVVSPTK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.27618408203125	2	429.276378	856.538203	0.18246	7.8326E-05	-0.56946	-0.00024446	-0.387	-0.00016613	429.27614175589696	16.212	0.17877	16.212	16.106	16.285	0					11	5	3	0	0	0	0.22872	1	3787	3787		124.08	24.705	1	190500			22798	2879	14697	14755	23124	23124					0.10419563282505351
KVVVSPTK	8	Unmodified	_KVVVSPTK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.276123046875	2	429.276378	856.538203	-0.43481	-0.00018665	-0.024325	-1.0442E-05	-0.45914	-0.0001971	429.27634227653715	16.409	0.31459	16.409	16.251	16.565	0					16	6	4	0	0	0	0.24433	1	4523	4523		136.27	24.62	1	2139800			22799	2879	14697	14755	23125	23125					0.10419563282505351
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.3244934082031	2	493.32386	984.633166	-0.11995	-5.9175E-05	0.4676	0.00023068	0.34765	0.00017151	493.3242134296868	14.333	0.16554	14.333	14.229	14.395	0					15	7	3	0	0	0	0.012231	1	2932	2932		136.27	22.857	1	219490			22800	2879	14698	14756	23126	23126					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.21844482421875	3	329.218332	984.633166	0.37203	0.00012248	-0.10947	-3.6039E-05	0.26256	8.6439E-05	329.2182755077223	14.313	0.12121	14.313	14.255	14.376	0					10	5	2	0	0	0	0.21263	1	2939	2939		66.962	22.585	1	73151			22801	2879	14698	14756	23127	23127					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.3238525390625	2	493.32386	984.633166	0.77433	0.00038199	-0.89265	-0.00044037	-0.11833	-5.8373E-05	493.32343331650287	14.657	0.25393	14.657	14.536	14.79	0					17	6	4	0	0	0	0.0063888	1	3612	3612		152.06	45.053	1	2865900			22802	2879	14698	14756	23128	23128					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.21826171875	3	329.218332	984.633166	0.63865	0.00021026	-0.7604	-0.00025034	-0.12175	-4.0082E-05	329.218091870558	14.657	0.16932	14.657	14.578	14.747	0					12	4	4	0	0	0	0.032052	1	3630	3630		123.21	61.101	1	2121400			22803	2879	14698	14756	23129	23129					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.3228454589844	2	493.32386	984.633166	3.4486	0.0017013	-3.9188	-0.0019332	-0.47024	-0.00023198	493.32174276118036	14.307	0.10567	14.307	14.262	14.368	0					5	3	2	0	0	0	0.15558	1	3089	3089		66.962	2.7547	1	38198			22804	2879	14698	14756	23130	23130					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.3235778808594	2	493.32386	984.633166	-1.2682	-0.00062566	0.7915	0.00039046	-0.47675	-0.00023519	493.32432917086436	14.318	0.11101	14.318	14.252	14.363	0					7	3	3	0	0	0	0.04067	1	3083	3083		98.582	13.421	1	130980			22805	2879	14698	14756	23131	23131					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.32452392578125	2	493.32386	984.633166	-0.051816	-2.5562E-05	-0.048067	-2.3713E-05	-0.099884	-4.9275E-05	493.3238753118999	14.655	0.16091	14.655	14.553	14.714	0					5	3	2	0	0	0	0.017421	1	3836	3836		126.24	35.873	1	925510			22806	2879	14698	14756	23132	23132					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.5528869628906	3	329.218332	984.633166	0.38957	0.00012825	-0.26259	-8.645E-05	0.12698	4.1804E-05	329.21823215343323	14.655	0.16091	14.655	14.553	14.714	0					7	3	3	0	0	0	0.21263	1	3837	3837		66.962	30.515	1	1280000			22807	2879	14698	14756	23133	23133					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.3235168457031	2	493.32386	984.633166	0.62665	0.00030914	-1.1555	-0.00057002	-0.52882	-0.00026088	493.3231938273107	14.638	0.15794	14.638	14.539	14.697	0					9	3	3	0	0	0	0.0076184	1	3852	3852		146.79	50.97	1	2369000			22808	2879	14698	14756	23134	23134					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.32464599609375	2	493.32386	984.633166	0.31198	0.0001539	0.60384	0.00029789	0.91581	0.00045179	493.32414422714896	14.382	0.13978	14.382	14.29	14.43	0					10	4	3	0	0	0	0.048471	1	3020	3020		95.815	5.4453	1	144950			22809	2879	14698	14756	23135	23135					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.5525207519531	3	329.218332	984.633166	0.55698	0.00018337	-0.12506	-4.1171E-05	0.43192	0.0001422	329.21819996614744	14.375	0.1072	14.375	14.323	14.43	0					5	3	2	0	0	0	0.36892	1	3033	3033		51.528	24.835	1	48826			22810	2879	14698	14756	23136	23136					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.3240661621094	2	493.32386	984.633166	0.0052881	2.6087E-06	0.95525	0.00047125	0.96054	0.00047386	493.3243224066353	14.375	0.12978	14.375	14.312	14.442	0					7	4	2	0	0	0	0.019258	1	3030	3030		123.21	43.496	1	237730			22811	2879	14698	14756	23137	23137					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.3236389160156	2	493.32386	984.633166	-0.61319	-0.0003025	0.50286	0.00024807	-0.11033	-5.4429E-05	493.32405866484305	14.617	0.271	14.617	14.457	14.728	0					14	5	4	0	0	0	0.015496	1	3643	3643		129.42	33.606	1	1475800			22812	2879	14698	14756	23138	23138					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.21826171875	3	329.218332	984.633166	0.002482	8.1711E-07	0.12356	4.0679E-05	0.12604	4.1496E-05	329.21834341402536	14.617	0.16863	14.617	14.457	14.626	0					8	3	3	0	0	0	0.27123	1	3663	3663		68.626	34.704	1	723010			22813	2879	14698	14756	23139	23139					0.14023496753691234
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.3237609863281	2	493.32386	984.633166	0.87047	0.00042942	-1.3356	-0.00065889	-0.46515	-0.00022947	493.3231472534449	14.6	0.21979	14.6	14.44	14.66	0					13	4	4	0	0	0	0.010427	1	3654	3654		140.11	33.105	1	3602600			22814	2879	14698	14756	23140	23140					0.14023496753691234
KVWEDFQE	8	Unmodified	_KVWEDFQE_					0	0	0			REV__ENSG00000091483|ENST00000366560|FH	REV__ENSG00000091483|ENST00000366560|FH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7537231445312	2	540.753464	1079.49238	0.30895	0.00016706	0.2273	0.00012291	0.53624	0.00028998	540.7535470347676	12.422	0.30222	12.422	12.208	12.51	0					12	7	2	0	0	0	0.61938	1	2781	2781		45.952	5.8938	1	202730	+		22815	13444	14699	14757	23141	23141					-0.044191266903681026
KVWIAVLSD	9	Unmodified	_KVWIAVLSD_					0	0	0		LRRC4C|p.R402W|1|0.34|ENSG00000148948|chr11:40115089-40115089|G/A|missense_variant	LRRC4C|p.R402W|1|0.34|ENSG00000148948|chr11:40115089-40115089|G/A|missense_variant	LRRC4C|p.R402W|1|0.34|ENSG00000148948|chr11:40115089-40115089|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.8013916015625	2	515.800217	1029.58588	1.3141	0.00067783	-0.36475	-0.00018814	0.94939	0.0004897	515.8002161889688	37.905	0.12849	37.905	37.825	37.954	0					11	7	2	0	0	0	0.53083	1	12396	12396		29.15	1.2673	1	75679			22816	11329	14700	14758	23142	23142					0.07227217482704873
KVWLIDVS	8	Unmodified	_KVWLIDVS_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2796325683594	2	480.28166	958.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.35	1	15.35	14.85	15.85	0								0	0	0	1.7419	1	4026	4026		42.474	0	1				22817	2135	14701	14759	23143	23143					0.06783545936946211
KVWTSQLK	8	Unmodified	_KVWTSQLK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2926025390625	2	495.292559	988.570566	-0.65928	-0.00032654	1.0216	0.00050601	0.36235	0.00017947	495.29310920251777	20.9	0.41253	20.9	20.793	21.206	0					19	8	3	0	0	0	0.26534	1	6702	6702		94.006	0	1	3708900			22818	3336	14702	14760	23144	23144					0.07582350685527217
KVYAKNDE	8	Unmodified	_KVYAKNDE_					0	0	0			REV__tr|U7SS58|U7SS58_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01553PE=4SV=1	REV__tr|U7SS58|U7SS58_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01553PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7494201660156	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.981	1	12.981	12.481	13.481	0								0	0	0	1.7419	1	2850	2850		35.618	2.8059	1		+		22819	21864	14703	14761	23145	23145					-0.002311093448156498
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.8201904296875	2	553.819473	1105.62439	1.3147	0.0007281	-0.51281	-0.000284	0.80188	0.0004441	553.8192478909439	17.556	0.13957	17.556	17.488	17.627	0					11	4	4	0	0	0	0.024086	1	4197	4197		120.31	45.263	1	273820			22820	5668	14704	14762	23146	23146					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.8197631835938	2	553.819473	1105.62439	0.61335	0.00033968	-0.27926	-0.00015466	0.33409	0.00018502	553.8193770694176	17.852	0.2291	17.852	17.762	17.992	0					17	5	4	0	0	0	9.6874E-06	1	5116	5116		190.62	83.615	1	2682000			22821	5668	14704	14762	23147	23147					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8197021484375	2	553.819473	1105.62439	-0.41057	-0.00022738	0.49325	0.00027317	0.082677	4.5788E-05	553.819643414621	17.557	0.14089	17.557	17.516	17.657	0					8	4	3	0	0	0	0.01077	1	4430	4430		134.77	60.511	1	200810			22822	5668	14704	14762	23148	23148					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.548583984375	3	369.548741	1105.62439	0.26251	9.7009E-05	-0.56534	-0.00020892	-0.30283	-0.00011191	369.54852119712086	17.811	0.26976	17.811	17.701	17.971	0					13	5	3	0	0	0	0.082776	1	5365	5365		83.647	28.563	1	1910500			22823	5668	14704	14762	23149	23149					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8197631835938	2	553.819473	1105.62439	0.0042026	2.3275E-06	0.36063	0.00019973	0.36484	0.00020205	553.8196770274436	17.828	0.22046	17.828	17.718	17.939	0					12	4	4	0	0	0	0.070127	1	5373	5373		81.525	33.565	1	1392400			22824	5668	14704	14762	23150	23150					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.8823547363281	3	369.548741	1105.62439	0.34875	0.00012888	-0.14909	-5.5095E-05	0.19967	7.3787E-05	369.5488428403753	17.654	0.09573	17.654	17.577	17.672	0					6	2	3	0	0	0	0.41958	1	4440	4440		40.058	9.5545	1	80760			22825	5668	14704	14762	23151	23151					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.8195190429688	2	553.819473	1105.62439	-1.1727	-0.00064946	1.8112	0.0010031	0.63849	0.00035361	553.8205196955736	17.632	0.10176	17.632	17.588	17.689	0					4	2	2	0	0	0	0.013411	1	4445	4445		117.53	59.296	1	123880			22826	5668	14704	14762	23152	23152					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.548583984375	3	369.548741	1105.62439	-0.23453	-8.6669E-05	-0.19485	-7.2007E-05	-0.42938	-0.00015868	369.5486382451414	17.792	0.25959	17.792	17.734	17.994	0					12	5	3	0	0	0	0.19952	1	5208	5208		61.691	24.183	1	1774100			22827	5668	14704	14762	23153	23153					0.07580523117235316
KVYDSVNVKK	10	Unmodified	_KVYDSVNVKK_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.3403930664062	2	590.340238	1178.66592	0.21226	0.00012531	0.28839	0.00017025	0.50066	0.00029556	590.3405893156233	21.327	0.65154	21.327	20.959	21.61	0					44	15	4	0	0	0	0.4758	1	6742	6742		47.96	5.0953	1	635780	+		22828	22162	14705	14763	23154	23154					0.08373659085896179
KVYGHNVI	8	Unmodified	_KVYGHNVI_					0	0	0		KLHL41|p.R586Qfs*9|1|0.09|ENSG00000239474|chr2:169525631-169525632|-/AAATGTG|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.R586Qfs*9|1|0.09|ENSG00000239474|chr2:169525631-169525632|-/AAATGTG|frameshift_variant	KLHL41|p.R586Qfs*9|1|0.09|ENSG00000239474|chr2:169525631-169525632|-/AAATGTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2669982910156	2	465.263802	928.513051	-0.83034	-0.00038633	4.2519	0.0019783	3.4216	0.0015919	465.26587592307396	29.767	0.62035	29.767	29.404	30.024	0					64	23	4	0	0	0	0.65276	1	9741	9741		40.573	0	1	577310			22829	7921	14706	14764	23155	23155					0.04593508479945285
KVYGPGVAK	9	Unmodified	_KVYGPGVAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.77410888671875	2	459.774003	917.533452	-0.44929	-0.00020657	-0.22511	-0.0001035	-0.67439	-0.00031007	459.7737843593624	18.133	0.35644	18.133	17.931	18.288	0					13	7	3	0	0	0	0.1115	1	5407	5407		76.774	25.439	1	409310			22830	7403	14707	14765	23156	23156					0.07138679139745818
KVYGPGVAK	9	Unmodified	_KVYGPGVAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7736511230469	2	459.774003	917.533452	0.883	0.00040598	-0.95054	-0.00043703	-0.067544	-3.1055E-05	459.7734177550884	18.167	1.053	18.167	17.666	18.719	0					32	21	2	0	0	0	0.16002	1	5399	5399		66.429	8.618	1	436700			22831	7403	14707	14765	23157	23157					0.07138679139745818
KVYKVKAEI	9	Unmodified	_KVYKVKAEI_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.336181640625	2	539.336967	1076.65938	1.9925	0.0010746	-2.302	-0.0012415	-0.30948	-0.00016691	539.3354411984759	35.078	0.20958	35.078	34.993	35.203	0					8	5	2	0	0	0	0.55048	1	13155	13155		26.693	1.2427	1	128440	+		22832	16441	14708	14766	23158	23158					0.12411765925162399
KVYLIPIT	8	Unmodified	_KVYLIPIT_					0	0	0			REV__GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant	REV__GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.8006896972656	2	473.802229	945.589904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.684	1	18.684	18.184	19.184	0								0	0	0	1.7419	1	5511	5511		25.45	0	1		+		22833	13795	14709	14767	23159	23159					0.11493306976421991
KVYNGILEK	9	Unmodified	_KVYNGILEK_					0	0	0		ENST00000467011.5_1_4:27022655-27024615:+|nuORF;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.3108520507812	2	532.310949	1062.60735	0.36107	0.0001922	-0.023653	-1.2591E-05	0.33742	0.00017961	532.3110664142375	24.432	0.11299	24.432	24.361	24.474	0					5	3	2	0	0	0	0.12834	1	7214	7214		72.879	11.907	1	111780			22834	2586	14710	14768	23160	23160					0.0785460251142922
KVYNGILEK	9	Unmodified	_KVYNGILEK_					0	0	0		ENST00000467011.5_1_4:27022655-27024615:+|nuORF;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.311279296875	2	532.310949	1062.60735	0.12515	6.662E-05	0.54146	0.00028823	0.66661	0.00035485	532.3113009816938	24.734	0.18202	24.734	24.643	24.825	0					11	4	3	0	0	0	0.037924	1	8372	8372		101.25	34.823	1	1098500			22835	2586	14710	14768	23161	23161					0.0785460251142922
KVYNGILEK	9	Unmodified	_KVYNGILEK_					0	0	0		ENST00000467011.5_1_4:27022655-27024615:+|nuORF;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.3118286132812	2	532.310949	1062.60735	-0.29844	-0.00015886	1.5742	0.00083799	1.2758	0.00067912	532.3116970188727	24.488	0.18775	24.488	24.407	24.594	0					14	6	3	0	0	0	0.078509	1	7486	7486		85.161	5.4482	1	272010			22836	2586	14710	14768	23162	23162					0.0785460251142922
KVYNGILEK	9	Unmodified	_KVYNGILEK_					0	0	0		ENST00000467011.5_1_4:27022655-27024615:+|nuORF;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.3113403320312	2	532.310949	1062.60735	1.7157	0.00091331	-0.63794	-0.00033958	1.0778	0.00057372	532.3105569142879	24.703	0.26392	24.703	24.593	24.857	0					15	5	4	0	0	0	0.020674	1	8663	8663		120.87	45.825	1	2212900			22837	2586	14710	14768	23163	23163					0.0785460251142922
KVYNGILEK	9	Unmodified	_KVYNGILEK_					0	0	0		ENST00000467011.5_1_4:27022655-27024615:+|nuORF;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	ENST00000467011.5_1_4:27022655-27024615:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.3116455078125	2	532.310949	1062.60735	-1.2698	-0.00067593	1.891	0.0010066	0.62122	0.00033068	532.3121009991678	24.541	0.18812	24.541	24.455	24.643	0					11	4	3	0	0	0	0.035106	1	7675	7675		104.01	34.386	1	296420			22838	2586	14710	14768	23164	23164					0.0785460251142922
KVYRIVPE	8	Unmodified	_KVYRIVPE_					0	0	0		ENST00000495137.5_1_6:394829-397293:+|nuORF;ENSG00000137265|ENST00000380956|IRF4;ENSG00000140968|ENST00000268638|IRF8;nc|ENSG00000137265|Q15306-2|IRF4	ENST00000495137.5_1_6:394829-397293:+|nuORF	ENST00000495137.5_1_6:394829-397293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.3023681640625	2	502.300384	1002.58622	3.5417	0.001779	0.31842	0.00015994	3.8601	0.0019389	502.3005151173712	23.403	0.067614	23.403	23.374	23.442	0					4	2	2	0	0	0	0.68432	1	7035	7035		35.618	0.46626	1	80915			22839	4153	14711	14769	23165	23165					0.08502637202559526
KVYTKSSHLK	10	Unmodified	_KVYTKSSHLK_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;ENSG00000102349|ENST00000468660|KLF8;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000109787|ENST00000261438|KLF3	nc|ENSG00000067082|Q99612-3|KLF6;ENSG00000102554|ENST00000377687|KLF5;ENSG00000109787|ENST00000261438|KLF3	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.8485107421875	2	595.84823	1189.68191	0.15167	9.037E-05	0.35918	0.00021401	0.51084	0.00030438	595.8484516722934	14.492	0.091526	14.492	14.445	14.536	0					6	2	3	0	0	0	0.010125	1	3548	3548		142.36	11.33	1	486480			22840	2177;1399;2591	14712	14770	23166	23166					0.09465365322785146
KVYTKSSHLK	10	Unmodified	_KVYTKSSHLK_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;ENSG00000102349|ENST00000468660|KLF8;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000109787|ENST00000261438|KLF3	nc|ENSG00000067082|Q99612-3|KLF6;ENSG00000102554|ENST00000377687|KLF5;ENSG00000109787|ENST00000261438|KLF3	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.8485107421875	2	595.84823	1189.68191	1.3502	0.00080452	-1.1035	-0.00065752	0.24671	0.000147	595.8475703687869	14.46	0.24025	14.46	14.406	14.646	0					10	5	3	0	0	0	0.011557	1	3767	3767		136.99	26.869	1	278860			22841	2177;1399;2591	14712	14770	23167	23167					0.09465365322785146
KVYTKSSHLK	10	Unmodified	_KVYTKSSHLK_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;ENSG00000102349|ENST00000468660|KLF8;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000109787|ENST00000261438|KLF3	nc|ENSG00000067082|Q99612-3|KLF6;ENSG00000102554|ENST00000377687|KLF5;ENSG00000109787|ENST00000261438|KLF3	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.8485717773438	2	595.84823	1189.68191	0.083204	4.9577E-05	0.56949	0.00033933	0.6527	0.00038891	595.8484482197787	14.488	0.14604	14.488	14.393	14.539	0					7	3	3	0	0	0	0.27065	1	3758	3758		70.816	0	1	222530			22842	2177;1399;2591	14712	14770	23168	23168					0.09465365322785146
KVYTKSSHLK	10	Unmodified	_KVYTKSSHLK_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;ENSG00000102349|ENST00000468660|KLF8;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000109787|ENST00000261438|KLF3	nc|ENSG00000067082|Q99612-3|KLF6;ENSG00000102554|ENST00000377687|KLF5;ENSG00000109787|ENST00000261438|KLF3	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.5677795410156	3	397.567912	1189.68191	0.37238	0.00014805	-0.71221	-0.00028315	-0.33983	-0.00013511	397.56758864518764	14.449	0.21792	14.449	14.391	14.609	0					7	4	2	0	0	0	0.65051	1	3609	3609		39.873	12.826	1	775310			22843	2177;1399;2591	14712	14770	23169	23169					0.09465365322785146
KVYTPSISK	9	Unmodified	_KVYTPSISK_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7987365722656	2	511.797675	1021.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.727	1	22.727	22.227	23.227	0								0	0	0	0.14961	1	7425	7425		59.931	1.1488	1				22844	4705	14713	14771	23170	23170					0.07086913620094037
KWALVQHQQ	9	Unmodified	_KWALVQHQQ_					0	0	0		ZNF599|p.R216Q|1|0.27|ENSG00000153896|chr19:34760154-34760154|C/T|missense_variant	ZNF599|p.R216Q|1|0.27|ENSG00000153896|chr19:34760154-34760154|C/T|missense_variant	ZNF599|p.R216Q|1|0.27|ENSG00000153896|chr19:34760154-34760154|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.3152465820312	2	569.311815	1136.60908	3.4443	0.0019609	2.2037	0.0012546	5.648	0.0032155	569.3132166706519	12.334	0.18489	12.334	12.261	12.446	0					13	6	3	0	0	0	0.27249	1	2597	2597		37.159	16.212	1	148250			22845	23167	14714	14772	23171	23171					0.04623656320018199
KWEKVARE	8	Unmodified	_KWEKVARE_					0	0	0		WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;nc|ENSG00000171804|Q6ZQQ6|WDR87	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.293212890625	2	523.293091	1044.57163	0.76774	0.00040175	1.5348	0.00080313	2.3025	0.0012049	523.2940584259857	14.735	0.049277	14.735	14.71	14.76	0					4	2	2	0	0	0	0.7126	1	3089	3089		31.955	0	1	32025			22846	6321	14715	14773	23172	23172					0.05112565054423612
KWGLNMKH	8	Unmodified	_KWGLNMKH_					0	0	0		ENST00000489193.1_1_3:86062505-86063063:+|nuORF	ENST00000489193.1_1_3:86062505-86063063:+|nuORF	ENST00000489193.1_1_3:86062505-86063063:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.269287109375	2	507.271104	1012.52766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.359	1	13.359	12.859	13.859	0								0	0	0	1.7419	1	3081	3081		26.796	0	1				22847	10054	14716	14774	23173	23173					0.021892573564400664
KWKLDCVLA	9	Unmodified	_KWKLDCVLA_					0	0	0			REV__ENSG00000174840|ENST00000311180|PDE12	REV__ENSG00000174840|ENST00000311180|PDE12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3008422851562	2	538.30207	1074.58959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.86	1	12.86	12.36	13.36	0								0	0	0	0.28996	1	2844	2844		37.159	12.64	1		+		22848	16586	14717	14775	23174	23174					0.055275639849242
KWKPSIKN	8	Unmodified	_KWKPSIKN_					0	0	0		ENST00000441719.5_1_2:86683622-86683685:+|nuORF	ENST00000441719.5_1_2:86683622-86683685:+|nuORF	ENST00000441719.5_1_2:86683622-86683685:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7987060546875	2	500.800552	999.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.794	1	19.794	19.294	20.294	0								0	0	0	1.7419	1	5189	5189		63.306	0	1				22849	9581	14718	14776	23175	23175					0.08674056922416185
KWKTVVAIF	9	Unmodified	_KWKTVVAIF_					0	0	0		KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant;KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant;nc|ENSG00000100433|P57789|KCNK10;nc|ENSG00000100433|P57789-4|KCNK10;ENSG00000100433|ENST00000319231|KCNK10	KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant	KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3330688476562	2	546.334227	1090.6539	-1.5011	-0.00082008	-0.9332	-0.00050984	-2.4343	-0.0013299	546.3336800960507	26.117	0.21585	26.117	26.03	26.246	0					12	5	3	0	0	0	0.25109	1	8349	8349		55.504	3.205	1	591700			22850	2028	14719	14777	23176	23176					0.11220087133347079
KWLPRYRK	8	Unmodified	_KWLPRYRK_					0	0	0			REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8472290039062	2	573.848368	1145.68218	-0.11699	-6.7136E-05	-0.84759	-0.00048639	-0.96458	-0.00055353	573.8478822090849	35.653	0.15705	35.653	35.594	35.751	0					9	4	3	0	0	0	0.73426	1	13399	13399		26.796	5.8492	1	93410	+		22851	12722	14720	14778	23177	23177					0.11516829833317388
KWLSRTSCL	9	Unmodified	_KWLSRTSCL_					0	0	0			REV__PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant	REV__PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.2965698242188	2	547.294776	1092.575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.141	1	22.141	21.641	22.641	0								0	0	0	0.31838	1	6214	6214		31.53	1.0262	1		+		22852	21404	14721	14779	23178	23178					0.03241491836752175
KWMEVAILE	9	Unmodified	_KWMEVAILE_					0	0	0			REV__ENST00000478269.5_1_3:50380731-50381380:-|nuORF	REV__ENST00000478269.5_1_3:50380731-50381380:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.7998046875	2	559.79936	1117.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.946	1	12.946	12.446	13.446	0								0	0	0	0.082437	1	2608	2608		76.774	5.4784	1		+		22853	12828	14722	14780	23179	23179					0.03007840402437978
KWMRTILK	8	Unmodified	_KWMRTILK_					0	0	0			REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3272705078125	2	538.325879	1074.63721	1.9067	0.0010264	0.80854	0.00043526	2.7153	0.0014617	538.3262846776336	18.097	0.16801	18.097	17.988	18.156	0					5	3	2	0	0	0	0.51384	1	5507	5507		58.782	16.386	1	1234700	+		22854	21104	14723	14781	23180	23180					0.10287262975771228
KWNDLCGYN	9	Unmodified	_KWNDLCGYN_					0	0	0			REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.7473754882812	2	556.745116	1111.47568	0.55933	0.00031141	2.4629	0.0013712	3.0223	0.0016826	556.7469658164446	17.163	0.49148	17.163	16.969	17.46	0					37	12	4	0	0	0	0.30841	1	4792	4792		42.396	0	1	469610	+		22855	16406	14724	14782	23181	23181					-0.0755995084798542
KWNGKFYIA	9	Unmodified	_KWNGKFYIA_					0	0	0			REV__ENST00000468511.5_1_6:2833828-2838227:-|nuORF	REV__ENST00000468511.5_1_6:2833828-2838227:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.8067626953125	2	563.805834	1125.59712	0.40151	0.00022637	0.79496	0.00044821	1.1965	0.00067458	563.8065476284397	21.649	0.14611	21.649	21.55	21.696	0					7	3	3	0	0	0	0.43426	1	6922	6922		38.806	12.113	1	766790	+		22856	12936	14725	14783	23182	23182					0.03934039576847681
KWNPTAGVAF	10	Unmodified	_KWNPTAGVAF_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7879638671875	2	545.787641	1089.56073	1.1966	0.00065311	-0.98713	-0.00053876	0.2095	0.00011434	545.7874228504429	41.788	0.10186	41.788	41.709	41.811	0					8	6	2	0	0	0	0.54861	1	13358	13358		40.058	8.1033	1	40482			22857	2203	14726	14784	23183	23183					0.019531626801381208
KWPWFTSHIPC	11	Unmodified	_KWPWFTSHIPC_					0	0	0			REV__ENST00000587705.5_1_17:40937392-40940185:+|nuORF	REV__ENST00000587705.5_1_17:40937392-40940185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	701.3419189453125	2	701.342258	1400.66996	-1.6554	-0.001161	0.81351	0.00057055	-0.84193	-0.00059048	701.3427882729193	16.484	0.45443	16.484	16.347	16.801	0					22	9	3	0	0	0	0.40479	1	4719	4719		51.193	14.746	1	449330	+		22858	20498	14727	14785	23184	23184					-0.014345746920298552
KWQVSALF	8	Unmodified	_KWQVSALF_					0	0	0			REV__ENST00000469423.1_1_19:12757436-12758173:-|nuORF	REV__ENST00000469423.1_1_19:12757436-12758173:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7718811035156	2	489.774003	977.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.689	1	17.689	17.189	18.189	0								0	0	0	1.7419	1	5298	5298		29.15	0	1		+		22859	13735	14728	14786	23185	23185					0.04378679139756514
KWRCKQNQ	8	Unmodified	_KWRCKQNQ_					0	0	0			REV__nc|ENSG00000167208|Q7Z614-4|SNX20	REV__nc|ENSG00000167208|Q7Z614-4|SNX20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7837524414062	2	545.782367	1089.55018	0.41067	0.00022414	1.9556	0.0010673	2.3662	0.0012914	545.7835982590485	21.049	0.17571	21.049	20.959	21.135	0					8	4	3	0	0	0	0.46905	1	6639	6639		42.474	0	1	593250	+		22860	16174	14729	14787	23186	23186					0.008988567540654913
KWRGSIYKL	9	Unmodified	_KWRGSIYKL_					0	0	0		BEST3|p.L258Wfs*33|1|0.3|ENSG00000127325|chr12:69677010-69677010|A/-|frameshift_variant;nc|ENSG00000127325|Q8N1M1-1|BEST3;ENSG00000127325|ENST00000330891|BEST3	BEST3|p.L258Wfs*33|1|0.3|ENSG00000127325|chr12:69677010-69677010|A/-|frameshift_variant	BEST3|p.L258Wfs*33|1|0.3|ENSG00000127325|chr12:69677010-69677010|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	384.2278747558594	3	384.229231	1149.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.572	1	21.572	21.072	22.072	0								0	0	0	0.28666	1	5960	5960		37.812	1.4939	1				22861	295	14730	14788	23187	23187					0.0970170387656708
KWSLFGWND	9	Unmodified	_KWSLFGWND_					0	0	0		MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|5|1|sense	MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|5|1|sense	MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|5|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.7767333984375	2	576.777274	1151.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.104	1	20.104	19.604	20.604	0								0	0	0	0.20989	1	5590	5590		34.173	5.023	1				22862	11361	14731	14789	23188	23188					-0.029714276995036926
KWSLHPSLPA	10	Unmodified	_KWSLHPSLPA_					0	0	0		ENST00000456101.6_1_6:109766698-109772967:-|nuORF;MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2120361328125	3	379.213469	1134.61858	0.66714	0.00025299	-4.3237	-0.0016396	-3.6566	-0.0013866	379.2118499145412	17.726	0.16857	17.726	17.666	17.834	0					5	3	2	0	0	0	0.50881	1	5178	5178		44.377	11.565	1	1551600			22863	9684	14732	14790	23189	23189					0.05665424605581393
KWSPHGELL	9	Unmodified	_KWSPHGELL_					0	0	0			REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34	REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.788330078125	2	533.787641	1065.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.637	1	39.637	39.137	40.137	0								0	0	0	0.3304	1	13317	13317		29.15	1.2673	1		+		22864	15655	14733	14791	23190	23190					0.03057162680147485
KWSRCGTAK	9	Unmodified	_KWSRCGTAK_					0	0	0			REV__ENST00000450834.2_1_10:31597037-31607903:-|nuORF	REV__ENST00000450834.2_1_10:31597037-31607903:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7734985351562	2	518.771468	1035.52838	1.5895	0.00082456	2.2331	0.0011585	3.8226	0.001983	518.7725620839926	12.486	0.17882	12.486	12.446	12.625	0					7	4	2	0	0	0	0.53064	1	2704	2704		29.17	4.6509	1	160730	+		22865	19236	14734	14792	23191	23191					0.012040520055052184
KWTLLQEQG	9	Unmodified	_KWTLLQEQG_					0	0	0		ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.7969360351562	2	551.798206	1101.58186	0.26709	0.00014738	-2.4791	-0.0013679	-2.212	-0.0012206	551.7970154993736	27.07	0.11828	27.07	26.99	27.108	0					6	4	2	0	0	0	0.44593	1	8581	8581		37.812	0.65241	1	91561		+	22866	640	14735	14793	23192	23192					0.035131279889810685
KWVTEKLA	8	Unmodified	_KWVTEKLA_					0	0	0			REV__nc|ENSG00000115419|O94925-3|GLS	REV__nc|ENSG00000115419|O94925-3|GLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.78472900390625	2	487.78711	973.559667	0.73874	0.00036035	1.1584	0.00056504	1.8971	0.00092539	487.7874720601354	14.485	0.44264	14.485	14.262	14.704	0					30	11	5	0	0	0	0.30437	1	3482	3482		82.305	8.05	1	782370	+		22867	20984	14736	14794	23193	23193					0.07182948311242399
KWYQIMKK	8	Unmodified	_KWYQIMKK_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.8157958984375	2	562.817887	1123.62122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.031	1	20.031	19.531	20.531	0								0	0	0	1.7419	1	6429	6429		33.516	4.366	1				22868	2933	14737	14795	23194	23194					0.06435556738847481
KYAALFSQM	9	Unmodified	_KYAALFSQM_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B	nc|ENSG00000020577|Q9UPU9-2|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7704467773438	2	529.770603	1057.52665	0.11388	6.033E-05	0.39595	0.00020976	0.50983	0.00027009	529.7709643993045	42.573	0.14901	42.573	42.498	42.647	0					15	8	2	0	0	0	0.30841	1	16118	16118		49.536	7.1399	1	113970			22869	1101;6759	14738	14796	23195	23195					0.0001899819685604598
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.2187194824219	3	406.219283	1215.63602	0.62086	0.0002522	2.2554	0.00091619	2.8763	0.0011684	406.2190626667765	23.301	0.19998	23.301	23.183	23.383	0					8	5	2	0	0	0	0.63019	1	6735	6735		30.569	0	1	59825			22870	2816	14739	14797	23196	23196					0.03682720140568563
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.2193298339844	3	406.219283	1215.63602	0.97547	0.00039626	2.2032	0.00089499	3.1787	0.0012912	406.5548804617829	23.566	0.57681	23.566	23.486	24.063	0					31	13	4	0	0	0	0.28724	2	7833	7816;7833		68.786	16.618	1	1213000			22871	2816	14739	14797	23197;23198	23198					0.03682720140568563
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.5564880371094	3	406.219283	1215.63602	0.68623	0.00027876	2.8937	0.0011755	3.5799	0.0014542	406.21899486435063	23.494	0.51076	23.494	23.369	23.88	0					27	10	4	0	0	0	0.33224	1	7980	7980		63.694	13.661	1	1176800			22872	2816	14739	14797	23199	23199					0.03682720140568563
KYADVLLKH	9	Unmodified	_KYADVLLKH_					0	0	0		tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8184814453125	2	543.818941	1085.62333	1.0852	0.00059013	0.14002	7.6148E-05	1.2252	0.00066628	543.8190315073978	32.557	0.6939	32.557	32.168	32.862	0					36	20	2	0	0	0	0.35021	1	11206	11206		45.972	11.8	1	129490			22873	22691	14740	14798	23200	23200					0.08394308748324875
KYAEFETL	8	Unmodified	_KYAEFETL_					0	0	0			REV__FAM184A|p.D182Tfs*21|1|0.26|ENSG00000111879|chr6:119024430-119024430|T/-|frameshift_variant	REV__FAM184A|p.D182Tfs*21|1|0.26|ENSG00000111879|chr6:119024430-119024430|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7550354003906	2	500.752933	999.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.243	1	35.243	34.743	35.743	0								0	0	0	1.7419	1	12542	12542		53.351	8.9743	1		+		22874	13984	14741	14799	23201	23201					-0.00845341059277871
KYAGQDIVF	9	Unmodified	_KYAGQDIVF_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7747802734375	2	520.7742	1039.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.753	1	22.753	22.253	23.253	0								0	0	0	0.27025	1	6831	6831		40.778	1.972	1				22875	7502	14742	14800	23202	23202					0.01566054068939593
KYANQSAGK	9	Unmodified	_KYANQSAGK_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.75372314453125	2	483.753798	965.493044	-0.59244	-0.00028659	0.71497	0.00034587	0.12253	5.9276E-05	483.7539610665427	18.379	0.11673	18.379	18.321	18.438	0					4	2	2	0	0	0	0.25716	1	5502	5502		54.776	3.4409	1	272200			22876	4662	14743	14801	23203	23203					0.008917127493305088
KYARLVAE	8	Unmodified	_KYARLVAE_					0	0	0			REV__UNC13C|p.A976V|1|0.38|ENSG00000137766|chr15:54015830-54015830|C/T|missense_variant	REV__UNC13C|p.A976V|1|0.38|ENSG00000137766|chr15:54015830-54015830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2765197753906	2	475.276909	948.539266	0.62003	0.00029469	-0.7944	-0.00037756	-0.17437	-8.2876E-05	475.27656585060896	37.712	0.42422	37.712	37.62	38.045	0					28	14	4	0	0	0	0.52345	1	14750	14750		57.811	1.3775	1	431860	+		22877	22260	14744	14802	23204	23204					0.06293777651410437
KYDEFIHKI	9	Unmodified	_KYDEFIHKI_					0	0	0		ENSG00000129007|ENST00000467889|CALML4;nc|ENSG00000129007|Q96GE6|CALML4;nc|ENSG00000129007|Q96GE6-3|CALML4;nc|ENSG00000129007|Q96GE6-2|CALML4;ENST00000562767.2_3_15:68486355-68521975:-|nuORF;nc|ENSG00000129007|Q96GE6-4|CALML4	ENSG00000129007|ENST00000467889|CALML4	ENSG00000129007|ENST00000467889|CALML4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.216796875	3	398.21688	1191.62881	0.37249	0.00014833	-0.35776	-0.00014247	0.014729	5.8655E-06	398.2168083379832	30.772	0.45995	30.772	30.714	31.174	0					15	9	2	0	0	0	0.31937	1	11445	11445		48.602	17.533	1	508560			22878	3576	14745	14803	23205	23205					0.040659875401161116
KYESKIQEPEK	11	Unmodified	_KYESKIQEPEK_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	689.8612670898438	2	689.864274	1377.714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.044	1	34.044	33.544	34.544	0								0	0	0	0.45674	1	12012	12012		15.333	4.4676	1		+		22879	13837	14746	14804	23206	23206					0.04024688215281458
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2645263671875	2	551.264196	1100.51384	0.57488	0.00031691	-0.00034804	-1.9186E-07	0.57453	0.00031672	551.2643330976279	32.178	0.25495	32.178	32.087	32.342	0					14	6	3	0	0	0	0.047855	1	11797	11797		96.034	41.257	1	235040			22880	11428	14747	14805	23207	23207					-0.03239741661673179
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2649536132812	2	551.264196	1100.51384	0.14297	7.8816E-05	0.86798	0.00047849	1.011	0.0005573	551.2646262596471	32.186	0.25045	32.186	32.109	32.359	0					9	5	3	0	0	0	0.078509	1	12212	12212		85.161	17.667	1	147520			22881	11428	14747	14805	23208	23208					-0.03239741661673179
KYFGFSMKQ	9	Unmodified	_KYFGFSMKQ_					0	0	0			REV__KIAA0930|p.T293Hfs*26|1|0.3|ENSG00000100364|chr22:45200011-45200012|-/G|frameshift_variant	REV__KIAA0930|p.T293Hfs*26|1|0.3|ENSG00000100364|chr22:45200011-45200012|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.2862548828125	2	568.283877	1134.5532	3.465	0.0019691	0.92693	0.00052676	4.392	0.0024959	568.2843338286282	22.863	0.26682	22.863	22.755	23.022	0					16	5	4	0	0	0	0.12278	1	7679	7679		67.494	12.717	1	1463500	+		22882	13549	14748	14806	23209	23209					-0.008693129117773424
KYFSDGSSNTF	11	Unmodified	_KYFSDGSSNTF_					0	0	0		nc|ENSG00000132640|Q9Y2F9-2|BTBD3;ENSG00000132640|ENST00000378226|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.7777099609375	2	626.777667	1251.54078	1.1133	0.0006978	-0.82893	-0.00051955	0.28438	0.00017824	626.7770645485962	34.147	0.15893	34.147	34.06	34.219	0					11	4	3	0	0	0	0.4771	1	12697	12697		45.908	3.0438	1	215860			22883	3803	14749	14807	23210	23210					-0.07492677841150908
KYGAILSQK	9	Unmodified	_KYGAILSQK_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2983703613281	2	504.297842	1006.58113	1.0294	0.0005191	-3.0088	-0.0015174	-1.9795	-0.00099825	504.2962711616897	40.47	0.79633	40.47	40.317	41.113	0					53	28	2	0	0	0	0.35021	1	16088	16088		45.972	1.8554	1	121610			22884	5904	14750	14808	23211	23211					0.07810333339944009
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.274658203125	2	513.274367	1024.53418	0.013139	6.7437E-06	-0.041233	-2.1164E-05	-0.028094	-1.442E-05	513.2742287304737	36.781	0.31169	36.781	36.663	36.975	0					15	8	3	0	0	0	0.023074	1	13888	13888		116.9	47.276	1	342870			22885	3042	14751	14809	23212	23212					0.02289473788800933
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2735595703125	2	513.274367	1024.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.558	1	36.558	36.058	37.058	0								0	0	0	0.30504	1	12380	12380		34.173	3.6689	1				22886	3042	14751	14809	23213	23213					0.02289473788800933
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2764892578125	2	513.274367	1024.53418	-0.46852	-0.00024048	4.2243	0.0021682	3.7558	0.0019277	513.2768552921649	36.738	0.1987	36.738	36.663	36.862	0					15	6	3	0	0	0	0.12239	1	14317	14317		74.255	17.821	1	205380			22887	3042	14751	14809	23214	23214					0.02289473788800933
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2501525878906	2	488.25036	974.486168	2.5904	0.0012647	-1.7259	-0.00084266	0.86449	0.00042209	488.2489753473737	40.494	0.33599	40.494	40.283	40.619	0					13	7	3	0	0	0	0.27512	1	16089	16089		90.777	43.119	1	158560			22888	4680	14752	14810	23215	23215					-0.0020960013124522447
KYGHALLPG	9	Unmodified	_KYGHALLPG_					0	0	0		ENSG00000189134|ENST00000343684|NKAPL	ENSG00000189134|ENST00000343684|NKAPL	ENSG00000189134|ENST00000343684|NKAPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2714538574219	2	478.271627	954.528701	0.4299	0.00020561	-0.81069	-0.00038773	-0.38079	-0.00018212	478.27117764312595	32.702	0.49134	32.702	32.424	32.915	0					31	12	3	0	0	0	0.55282	1	11988	11988		26.796	1.3459	1	168400			22889	7303	14753	14811	23216	23216					0.0496179499699565
KYGKDKAK	8	Unmodified	_KYGKDKAK_					0	0	0		tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.27691650390625	2	469.276909	936.539266	-1.1787	-0.00055315	1.8043	0.00084673	0.62561	0.00029359	469.27766758328795	19.089	0.13645	19.089	19.026	19.162	0					7	4	2	0	0	0	0.68432	1	5114	5114		35.618	0.41757	1	128940			22890	22750	14754	14812	23217	23217					0.0684577765140375
KYGKLTLKK	9	Unmodified	_KYGKLTLKK_					0	0	0			REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.2373352050781	3	360.237615	1077.69102	0.7278	0.00026218	-1.1768	-0.00042394	-0.44903	-0.00016176	360.23709350637677	14.943	0.22151	14.943	14.863	15.084	0					9	5	2	0	0	0	0.61124	1	3766	3766		17.468	2.1349	1	302770	+		22891	13207	14755	14813	23218	23218					0.15527758679127146
KYGMVTYLL	9	Unmodified	_KYGMVTYLL_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2971801757812	2	544.296453	1086.57835	3.6755	0.0020005	-3.1059	-0.0016905	0.56957	0.00031001	544.2952792353219	48.486	0.2797	48.486	48.328	48.608	0					22	15	2	0	0	0	0.35021	1	19258	19258		45.972	8.1607	1	70529			22892	5276	14756	14814	23219	23219					0.03852741890773359
KYGNANVW	8	Unmodified	_KYGNANVW_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.237548828125	2	476.237784	950.461016	-0.38328	-0.00018253	0.18744	8.9266E-05	-0.19584	-9.3264E-05	476.23804923565154	30.7	0.35843	30.7	30.596	30.955	0					17	8	3	0	0	0	0.39542	1	11086	11086		71.378	13.567	1	273590			22893	2302	14757	14815	23220	23220					-0.01619654933813308
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7925109863281	2	487.792727	973.5709	-0.52953	-0.0002583	0.15149	7.3897E-05	-0.37804	-0.0001844	487.7928061445145	25.588	0.40152	25.588	25.464	25.866	0					19	6	4	0	0	0	0.60719	1	8961	8961		47.916	9.1095	1	692460			22894	2883	14758	14816	23221	23221					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7925720214844	2	487.792727	973.5709	0.80154	0.00039099	-1.3849	-0.00067552	-0.58331	-0.00028453	487.7920947454477	25.607	0.85472	25.607	25.347	26.202	0					36	15	5	0	0	0	0.5676	1	8974	8974		53.351	16.192	1	3817700			22895	2883	14758	14816	23222	23222					0.08305770405377189
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.74761962890625	2	472.747453	943.480354	-0.55878	-0.00026416	0.087006	4.1132E-05	-0.47178	-0.00022303	472.7474724470745	45.729	0.30748	45.729	45.62	45.928	0					35	18	3	0	0	0	0.46905	1	16975	16975		63.306	7.8021	1	166230			22896	925	14759	14817	23223	23223					0.006353013570901567
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2495422363281	2	472.747453	943.480354	0.59141	0.00027959	-0.6874	-0.00032497	-0.095992	-4.538E-05	472.74700378227004	45.71	0.17818	45.71	45.625	45.803	0					14	10	2	0	0	0	0.30437	1	17651	17651		82.305	8.3303	1	87850			22897	925	14759	14817	23224	23224					0.006353013570901567
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7466735839844	2	472.747453	943.480354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.522	1	45.522	45.022	46.022	0								0	0	0	1.7419	1	15489	15489		27.882	3.6795	1				22898	925	14759	14817	23225	23225					0.006353013570901567
KYGPVFTI	8	Unmodified	_KYGPVFTI_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.762939453125	2	462.763104	923.511654	-0.71363	-0.00033024	0.26218	0.00012133	-0.45145	-0.00020891	462.7631503348514	43.2	0.37773	43.2	43.062	43.44	0					43	21	3	0	0	0	0.61938	1	16296	16296		45.952	7.1458	1	611290			22899	6004	14760	14818	23226	23226					0.046838743911848724
KYGPVFTI	8	Unmodified	_KYGPVFTI_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.76300048828125	2	462.763104	923.511654	0.71221	0.00032959	-0.8192	-0.00037909	-0.10698	-4.9508E-05	462.76269806992104	43.174	0.36086	43.174	43.041	43.402	0					43	19	3	0	0	0	0.49216	1	16915	16915		60.972	13.056	1	385730			22900	6004	14760	14818	23227	23227					0.046838743911848724
KYGPVFTI	8	Unmodified	_KYGPVFTI_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7626953125	2	462.763104	923.511654	-0.96682	-0.00044741	0.42626	0.00019726	-0.54056	-0.00025015	462.7631488036466	43.16	0.20593	43.16	43.074	43.28	0					16	10	2	0	0	0	0.41701	1	16900	16900		68.787	24.67	1	78410			22901	6004	14760	14818	23228	23228					0.046838743911848724
KYGSVTVW	8	Unmodified	_KYGSVTVW_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2501220703125	2	470.25036	938.486168	-0.61754	-0.0002904	0.6896	0.00032428	0.072059	3.3886E-05	470.2504106482788	37.225	0.43206	37.225	37.131	37.563	0					23	12	3	0	0	0	0.64144	1	14098	14098		42.396	5.237	1	237870			22902	4911	14761	14819	23229	23229					0.014463998687460844
KYGSVTVW	8	Unmodified	_KYGSVTVW_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.24981689453125	2	470.25036	938.486168	0.60747	0.00028566	0.33148	0.00015588	0.93895	0.00044154	470.24983702315717	37.197	0.51107	37.197	37.087	37.598	0					35	15	4	0	0	0	0.53424	1	14527	14527		56.721	1.2168	1	477370			22903	4911	14761	14819	23230	23230					0.014463998687460844
KYGSVTVW	8	Unmodified	_KYGSVTVW_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.25018310546875	2	470.25036	938.486168	2.5307	0.00119	-1.9885	-0.00093511	0.54212	0.00025493	470.249025664988	37.146	0.60136	37.146	37.04	37.642	0					27	12	4	0	0	0	0.5676	1	14509	14509		53.351	12.779	1	717720			22904	4911	14761	14819	23231	23231					0.014463998687460844
KYIASAISSF	10	Unmodified	_KYIASAISSF_					0	0	0		tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7645874023438	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.244	1	38.244	37.744	38.744	0								0	0	0	0.37602	1	14997	14997		37.812	3.8899	1				22905	22755	14762	14820	23232	23232					0.036346097574551095
KYICENQDSI	10	Carbamidomethyl (C)	_KYIC(Carbamidomethyl (C))ENQDSI_	KYIC(1)ENQDSI		KYIC(60)ENQDSI		0	1	0		nc|ENSG00000163631|P02768-2|ALB;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-2|ALB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	635.2929077148438	2	635.292627	1268.5707	-0.27058	-0.0001719	1.1812	0.00075041	0.91062	0.00057851	635.293406082997	28.704	0.16436	28.704	28.597	28.762	0					5	3	2	0	0	0	0.36647	1	10560	10560		59.931	6.5793	1	92641		+	22906	110	14763	14821	23233	23233	5				-0.052840621674477006
KYIDKTIRV	9	Unmodified	_KYIDKTIRV_					0	0	0		ENST00000591745.1_1_19:2328269-2328565:-|nuORF;ENSG00000130332|ENST00000252622|LSM7	ENST00000591745.1_1_19:2328269-2328565:-|nuORF	ENST00000591745.1_1_19:2328269-2328565:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2325439453125	3	379.232641	1134.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.792	1	24.792	24.292	25.292	0								0	0	0	0.25045	1	8598	8598		43.651	12.017	1				22907	3634	14764	14822	23234	23234					0.11414266811107154
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-3|PPP2R5E;PPP2R5E|p.K449Nfs*7|1|0.22|ENSG00000154001|chr14:63376066-63376066|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000078304|Q13362-2|PPP2R5C;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.33447265625	2	577.334424	1152.6543	-0.073813	-4.2615E-05	0.78496	0.00045319	0.71115	0.00041057	577.3346551967504	36.634	0.22948	36.634	36.555	36.784	0					8	6	2	0	0	0	0.070005	1	13821	13821		88.177	26.07	1	120560			22908	11440;11962;5070	14765	14823	23235	23235					0.08407462062564264
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-3|PPP2R5E;PPP2R5E|p.K449Nfs*7|1|0.22|ENSG00000154001|chr14:63376066-63376066|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000078304|Q13362-2|PPP2R5C;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.3348388671875	2	577.334424	1152.6543	1.7417	0.0010055	-0.74497	-0.0004301	0.99668	0.00057542	577.3339437534688	36.598	0.27518	36.598	36.502	36.777	0					17	8	3	0	0	0	0.070005	1	14257	14257		88.177	33.401	1	343970			22909	11440;11962;5070	14765	14823	23236	23236					0.08407462062564264
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-3|PPP2R5E;PPP2R5E|p.K449Nfs*7|1|0.22|ENSG00000154001|chr14:63376066-63376066|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000078304|Q13362-2|PPP2R5C;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.3346557617188	2	577.334424	1152.6543	1.7083	0.00098627	0.023496	1.3565E-05	1.7318	0.00099983	577.3350469401875	36.521	0.6627	36.521	36.115	36.778	0					19	13	2	0	0	0	0.01873	1	14213	14213		124.08	44.368	1	511950			22910	11440;11962;5070	14765	14823	23237	23237					0.08407462062564264
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2642822265625	2	529.263665	1056.51278	0.11236	5.9468E-05	0.89534	0.00047387	1.0077	0.00053334	529.2638995384301	37.819	0.15383	37.819	37.729	37.882	0					24	5	6	0	0	0	0.24334	1	14352	14352		56.434	1.6575	1	918340			22911	7458	14766	14824	23238	23238					-0.013219560305742561
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2637329101562	2	529.263665	1056.51278	-1.1716	-0.00062007	2.5423	0.0013455	1.3707	0.00072546	529.2650703556023	37.582	0.17883	37.582	37.506	37.685	0					15	9	2	0	0	0	0.19605	1	13440	13440		62.107	5.3864	1	117870			22912	7458	14766	14824	23239	23239					-0.013219560305742561
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2642822265625	2	529.263665	1056.51278	3.4517	0.0018268	-2.0162	-0.0010671	1.4355	0.00075977	529.2625762489768	37.733	0.39535	37.733	37.627	38.022	0					23	8	5	0	0	0	0.037924	1	14764	14764		101.25	34.823	1	1951800			22913	7458	14766	14824	23240	23240					-0.013219560305742561
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000141639|ENST00000400384|MAPK4;MAPK6|p.P206*|1|0.03|ENSG00000069956|chr15:52050053-52050054|CC/-|frameshift_variant;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.79638671875	2	522.795466	1043.57638	0.78869	0.00041232	0.12827	6.7061E-05	0.91696	0.00047938	522.7955458672853	25.049	0.39086	25.049	24.946	25.337	0					26	11	3	0	0	0	0.085655	1	7465	7465		82.75	31.415	1	1023200			22914	4462;2196	14767	14825	23241	23241					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000141639|ENST00000400384|MAPK4;MAPK6|p.P206*|1|0.03|ENSG00000069956|chr15:52050053-52050054|CC/-|frameshift_variant;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7957153320312	2	522.795466	1043.57638	0.08663	4.529E-05	0.45211	0.00023636	0.53874	0.00028165	522.795581903837	25.328	0.77358	25.328	25.226	26	0					46	16	5	0	0	0	0.035106	1	8625	8625		104.01	39.806	1	7549200			22915	4462;2196	14767	14825	23242	23242					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000141639|ENST00000400384|MAPK4;MAPK6|p.P206*|1|0.03|ENSG00000069956|chr15:52050053-52050054|CC/-|frameshift_variant;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7952880859375	2	522.795466	1043.57638	0.44711	0.00023375	0.33232	0.00017374	0.77943	0.00040748	522.7955233815342	25.097	0.41196	25.097	24.995	25.407	0					32	13	4	0	0	0	0.15558	1	7742	7742		66.962	19.046	1	1370200			22916	4462;2196	14767	14825	23243	23243					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000141639|ENST00000400384|MAPK4;MAPK6|p.P206*|1|0.03|ENSG00000069956|chr15:52050053-52050054|CC/-|frameshift_variant;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7958374023438	2	522.795466	1043.57638	0.34611	0.00018094	-0.22721	-0.00011879	0.11889	6.2155E-05	522.7950335194984	25.092	0.20506	25.092	25.018	25.223	0					10	6	2	0	0	0	0.12278	1	7765	7765		74.165	35.359	1	211520			22917	4462;2196	14767	14825	23244	23244					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000141639|ENST00000400384|MAPK4;MAPK6|p.P206*|1|0.03|ENSG00000069956|chr15:52050053-52050054|CC/-|frameshift_variant;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7954711914062	2	522.795466	1043.57638	1.7968	0.00093934	-1.2512	-0.0006541	0.54561	0.00028524	522.7946614462301	25.299	0.74606	25.299	25.188	25.934	0					33	13	4	0	0	0	0.02429	1	8953	8953		114.89	49.091	1	8928200			22918	4462;2196	14767	14825	23245	23245					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000141639|ENST00000400384|MAPK4;MAPK6|p.P206*|1|0.03|ENSG00000069956|chr15:52050053-52050054|CC/-|frameshift_variant;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7957153320312	2	522.795466	1043.57638	-0.036712	-1.9193E-05	0.60111	0.00031426	0.5644	0.00029506	522.7958163787312	25.282	0.2705	25.282	25.171	25.442	0					14	5	4	0	0	0	0.082776	1	8967	8967		83.647	30.296	1	847450			22919	4462;2196	14767	14825	23246	23246					0.05633449197171103
KYIKEAVRL	9	Unmodified	_KYIKEAVRL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.9009704589844	3	373.901003	1118.68118	-0.33808	-0.00012641	0.13492	5.0447E-05	-0.20316	-7.5963E-05	373.90114671540215	24.43	0.21756	24.43	24.33	24.547	0					11	4	3	0	0	0	0.34452	1	8445	8445		46.457	14.823	1	259560			22920	4360	14768	14826	23247	23247					0.12658570673738723
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.2938232421875	2	550.292756	1098.57096	1.5494	0.00085264	0.66732	0.00036722	2.2168	0.0012199	550.2930546878256	27.302	0.20003	27.302	27.211	27.411	0					17	8	3	0	0	0	0.04067	1	8385	8385		98.582	43.806	1	254120			22921	2083	14769	14827	23248	23248					0.02561725614691568
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.293212890625	2	550.292756	1098.57096	1.8341	0.0010093	-0.93413	-0.00051404	0.89999	0.00049526	550.2922208198365	27.51	0.6369	27.51	27.378	28.015	0					38	15	4	0	0	0	0.0015666	1	9624	9624		177.3	78.675	1	1988000			22922	2083	14769	14827	23249	23249					0.02561725614691568
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.293701171875	2	550.292756	1098.57096	1.1537	0.00063486	-0.037493	-2.0632E-05	1.1162	0.00061422	550.2928463445562	27.362	0.21119	27.362	27.294	27.505	0					14	5	4	0	0	0	0.035106	1	8938	8938		104.01	41.906	1	367260			22923	2083	14769	14827	23250	23250					0.02561725614691568
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant;MX1|p.M372Cfs*4|1|0.37|ENSG00000157601|chr21:41445548-41445548|A/-|frameshift_variant;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.830078125	2	589.830037	1177.64552	-0.45077	-0.00026588	0.93357	0.00055065	0.4828	0.00028477	589.8303656408141	22.135	0.13516	22.135	22.071	22.206	0					7	4	2	0	0	0	0.023928	1	6476	6476		115.49	35.781	1	159970			22924	5223	14770	14828	23251	23251					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant;MX1|p.M372Cfs*4|1|0.37|ENSG00000157601|chr21:41445548-41445548|A/-|frameshift_variant;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.8301391601562	2	589.830037	1177.64552	1.4789	0.00087228	-0.98453	-0.00058071	0.49435	0.00029158	589.8293081733766	22.31	0.31319	22.31	22.204	22.518	0					10	6	2	0	0	0	0.0033339	1	7545	7545		166.68	47.935	1	1109200			22925	5223	14770	14828	23252	23252					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant;MX1|p.M372Cfs*4|1|0.37|ENSG00000157601|chr21:41445548-41445548|A/-|frameshift_variant;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.8300170898438	2	589.830037	1177.64552	-1.7659	-0.0010416	1.3987	0.00082499	-0.36717	-0.00021657	589.8309719822753	22.195	0.10168	22.195	22.144	22.246	0					4	2	2	0	0	0	0.01873	1	6581	6581		124.08	19.334	1	165340			22926	5223	14770	14828	23253	23253					0.0638048842608896
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.3087768554688	2	546.308406	1090.60226	1.2091	0.00066054	-0.56825	-0.00031044	0.64084	0.0003501	546.3080623962159	24.146	0.38238	24.146	24.014	24.396	0					31	12	4	0	0	0	0.026848	1	7065	7065		112.11	24.411	1	1483300			22927	2176;4038	14771	14829	23254	23254					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.308349609375	2	546.308406	1090.60226	0.4283	0.00023398	-0.15623	-8.5349E-05	0.27207	0.00014863	546.3082490878728	24.396	0.40392	24.396	24.294	24.698	0					28	9	5	0	0	0	0.019258	1	8217	8217		123.21	27.018	1	10358000			22928	2176;4038	14771	14829	23255	23255					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3089599609375	2	546.308406	1090.60226	0.47915	0.00026177	0.57493	0.00031409	1.0541	0.00057586	546.3086481391462	24.153	0.35956	24.153	24.053	24.413	0					34	11	5	0	0	0	0.0097668	1	7344	7344		141.52	31.401	1	1760000			22929	2176;4038	14771	14829	23256	23256					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.30859375	2	546.308406	1090.60226	1.8767	0.0010253	-1.3853	-0.00075681	0.49138	0.00026845	546.3075424167191	24.402	0.41744	24.402	24.294	24.712	0					18	8	3	0	0	0	0.0047071	1	8523	8523		159.28	19.305	1	12345000			22930	2176;4038	14771	14829	23257	23257					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3084716796875	2	546.308406	1090.60226	0.33475	0.00018287	0.22855	0.00012486	0.56329	0.00030773	546.3085012163081	24.385	0.31498	24.385	24.278	24.593	0					14	6	4	0	0	0	0.063171	1	8518	8518		90.601	5.6853	1	1299100			22931	2176;4038	14771	14829	23258	23258					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3090209960938	2	546.308406	1090.60226	1.1254	0.00061479	0.40603	0.00022182	1.5314	0.00083661	546.30845665116	24.226	0.18801	24.226	24.124	24.312	0					8	4	2	0	0	0	0.047855	1	7509	7509		96.034	11.118	1	326040			22932	2176;4038	14771	14829	23259	23259					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.30859375	2	546.308406	1090.60226	1.9236	0.0010509	-0.91405	-0.00049935	1.0096	0.00055153	546.3077812198508	24.372	0.41496	24.372	24.213	24.628	0					15	8	2	0	0	0	0.0071053	1	8383	8383		148.99	26.811	1	3342600			22933	2176;4038	14771	14829	23260	23260					0.060582986487816015
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8291625976562	2	539.828975	1077.6434	2.0882	0.0011273	-0.62577	-0.00033781	1.4624	0.00078947	539.8285724418797	37.746	0.39258	37.746	37.596	37.988	0					18	8	4	0	0	0	0.27891	1	14816	14816		53.089	12.311	1	619200			22934	3193	14772	14830	23261	23261					0.10768059688280118
KYIWCLDY	8	Carbamidomethyl (C)	_KYIWC(Carbamidomethyl (C))LDY_	KYIWC(1)LDY		KYIWC(58)LDY		0	1	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.777587890625	2	580.775885	1159.53722	3.2437	0.0018838	-0.35016	-0.00020336	2.8935	0.0016805	580.7759307733556	44.26	0.87833	44.26	43.652	44.53	0					84	33	3	0	0	0	0.52345	1	17769	17769		57.811	15.337	1	126980			22935	7391	14773	14831	23262	23262	312				-0.03617019148714462
KYIYKDGVT	9	Unmodified	_KYIYKDGVT_					0	0	0		tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7957763671875	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.983	1	39.983	39.483	40.483	0								0	0	0	0.27025	1	15744	15744		40.778	4.3314	1				22936	22764	14774	14832	23263	23263					0.03634609757477847
KYKASITAL	9	Unmodified	_KYKASITAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.78204345703125	2	497.800217	993.585882	0.18938	9.4272E-05	0.16308	8.1181E-05	0.35246	0.00017545	497.80037049749313	28.825	0.13734	28.825	28.753	28.891	0					6	4	2	0	0	0	0.42902	1	9032	9032		39.253	2.0937	1	59634			22937	2007	14775	14833	23264	23264					0.08883217482684813
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.295654296875	2	518.295299	1034.57605	0.46335	0.00024015	-2.3841	-0.0012357	-1.9208	-0.00099552	518.2953218157538	28.136	0.30935	28.136	28.031	28.34	0					14	10	2	0	0	0	0.095583	1	8748	8748		80.455	12.961	1	338260			22938	3463	14776	14834	23265	23265					0.06014029477319127
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2954711914062	2	518.295299	1034.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.412	1	28.412	27.912	28.912	0								0	0	0	0.069826	1	10037	10037		80.455	11.97	1				22939	3463	14776	14834	23266	23266					0.06014029477319127
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF;SLC25A3|p.A215Hfs*11|1|0.42|ENSG00000075415|chr12:98598698-98598698|A/-|frameshift_variant	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2918701171875	2	537.292559	1072.57057	1.8777	0.0010089	-1.3842	-0.00074374	0.49344	0.00026512	537.2915711233558	38.418	0.59522	38.418	38.248	38.843	0					47	21	3	0	0	0	0.087582	1	15078	15078		82.305	56.731	1	271320			22940	1540	14777	14835	23267	23267					0.0371835068551718
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF;SLC25A3|p.A215Hfs*11|1|0.42|ENSG00000075415|chr12:98598698-98598698|A/-|frameshift_variant	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2928466796875	2	537.292559	1072.57057	1.9756	0.0010614	-1.2033	-0.00064654	0.77222	0.00041491	537.2916796630229	38.357	0.59043	38.357	38.202	38.792	0					30	12	3	0	0	0	0.071197	1	15061	15061		87.754	52.136	1	437820			22941	1540	14777	14835	23268	23268					0.0371835068551718
KYKHNNFDL	9	Unmodified	_KYKHNNFDL_					0	0	0			REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.8026123046875	2	589.80128	1177.58801	0.19217	0.00011334	1.9988	0.0011789	2.191	0.0012923	589.8030132509416	36.71	0.19796	36.71	36.586	36.784	0					9	5	2	0	0	0	0.35021	1	13857	13857		30.504	0	1	115270	+		22942	22201	14778	14836	23269	23269					0.006316462205177231
KYKLIYSY	8	Unmodified	_KYKLIYSY_					0	0	0			REV__nc|ENSG00000174611|Q8NBH2-3|KY	REV__nc|ENSG00000174611|Q8NBH2-3|KY	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3024291992188	2	539.302593	1076.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.439	1	38.439	37.939	38.939	0								0	0	0	1.7419	1	15113	15113		47.916	9.1095	1		+		22943	16575	14779	14837	23270	23270					0.0554010162547911
KYKLSKGP	8	Unmodified	_KYKLSKGP_					0	0	0			REV__ENSG00000069020|ENST00000403625|MAST4;REV__MAST4|p.S1880Afs*59|1|0.41|ENSG00000069020|chr5:67164811-67164811|C/-|frameshift_variant	REV__ENSG00000069020|ENST00000403625|MAST4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.78167724609375	2	460.781828	919.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.915	1	21.915	21.415	22.415	0								0	0	0	1.7419	1	6438	6438		49.442	1.5259	1		+		22944	13159;20868	14780	14838	23271	23271					0.08610965656805547
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2776489257812	2	524.277106	1046.53966	0.092617	4.8557E-05	0.5829	0.0003056	0.67551	0.00035416	524.2774497641954	32.028	0.45443	32.028	31.887	32.342	0					40	11	5	0	0	0	0.12834	1	11697	11697		72.879	30.483	1	3233300			22945	7441	14781	14839	23272	23272					0.01825152580613576
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7803344726562	2	548.779679	1095.5448	1.2512	0.00068665	-0.47993	-0.00026338	0.7713	0.00042327	548.7794259523733	31.194	0.18443	31.194	31.115	31.299	0					12	7	2	0	0	0	0.22504	1	10005	10005		58.63	22.312	1	160090			22946	7644	14782	14840	23273	23273					0.0008541165257156536
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7799682617188	2	548.779679	1095.5448	0.49906	0.00027387	0.10363	5.6868E-05	0.60268	0.00033074	548.7798093599254	31.449	0.25333	31.449	31.359	31.613	0					11	6	2	0	0	0	0.010427	1	11454	11454		140.11	43.922	1	1093400			22947	7644	14782	14840	23274	23274					0.0008541165257156536
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7799682617188	2	548.779679	1095.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.23	1	31.23	30.73	31.73	0								0	0	0	0.16368	1	10333	10333		56.632	10.66	1				22948	7644	14782	14840	23275	23275					0.0008541165257156536
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7798461914062	2	548.779679	1095.5448	0.27652	0.00015175	0.34709	0.00019048	0.62362	0.00034223	548.7797664722473	31.463	0.24137	31.463	31.364	31.605	0					9	5	2	0	0	0	0.022698	1	11875	11875		117.53	37.071	1	848320			22949	7644	14782	14840	23276	23276					0.0008541165257156536
KYLESVKPF	9	Unmodified	_KYLESVKPF_					0	0	0		nc|ENSG00000005469|Q9UKG9-2|CROT;CROT|p.R78Kfs*34|1|0.31|ENSG00000005469|chr7:87359317-87359318|-/A|frameshift_variant;ENSG00000005469|ENST00000331536|CROT	nc|ENSG00000005469|Q9UKG9-2|CROT	nc|ENSG00000005469|Q9UKG9-2|CROT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3152465820312	2	555.813325	1109.6121	1.0995	0.00061114	-0.37368	-0.00020769	0.72587	0.00040345	555.8135369459786	33.178	0.2066	33.178	33.059	33.266	0					10	4	3	0	0	0	0.30841	1	12612	12612		49.536	7.1399	1	129970			22950	695	14783	14841	23277	23277					0.061674866541807205
KYLGKNSK	8	Unmodified	_KYLGKNSK_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.276611328125	2	469.276909	936.539266	0.018683	8.7674E-06	-1.1679	-0.00054808	-1.1492	-0.00053931	469.27668844345976	19.065	0.11473	19.065	19.031	19.146	0					5	3	2	0	0	0	0.61938	1	4870	4870		45.952	3.4775	1	71918			22951	3929	14784	14842	23278	23278					0.06845777651415119
KYLGKNSK	8	Unmodified	_KYLGKNSK_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.27606201171875	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.181	1	19.181	18.681	19.681	0								0	0	0	1.7419	1	5158	5158		29.15	2.3535	1				22952	3929	14784	14842	23279	23279					0.06845777651415119
KYLGKNSK	8	Unmodified	_KYLGKNSK_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2765197753906	2	469.276909	936.539266	-0.52381	-0.00024581	-0.40122	-0.00018828	-0.92503	-0.00043409	469.27676315897963	19.267	0.21303	19.267	19.196	19.409	0					9	4	3	0	0	0	0.61938	1	5931	5931		45.952	1.8352	1	325850			22953	3929	14784	14842	23280	23280					0.06845777651415119
KYLGKNSK	8	Unmodified	_KYLGKNSK_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2766418457031	2	469.276909	936.539266	0.54753	0.00025694	-1.032	-0.0004843	-0.48449	-0.00022736	469.27651060824076	19.284	0.26312	19.284	19.179	19.442	0					9	5	2	0	0	0	0.67394	1	5945	5945		37.159	1.5408	1	764860			22954	3929	14784	14842	23281	23281					0.06845777651415119
KYLRRVNK	8	Unmodified	_KYLRRVNK_					0	0	0			REV__ENST00000409339.3_1_7:158486161-158494616:-|nuORF	REV__ENST00000409339.3_1_7:158486161-158494616:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.839111328125	2	538.838	1075.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.353	1	37.353	36.853	37.853	0								0	0	0	1.7419	1	14597	14597		24.203	0.68005	1		+		22955	18997	14785	14843	23282	23282					0.1266423945362476
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF;PMPCA|p.E101D|1|0.05|ENSG00000165688|chr9:136412518-136412518|A/C|missense_variant	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2839965820312	2	518.284734	1034.55492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.441	1	34.441	33.941	34.941	0								0	0	0	0.1633	1	11616	11616		56.721	18.91	1				22956	5821	14786	14844	23283	23283					0.03902064168460129
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF;PMPCA|p.E101D|1|0.05|ENSG00000165688|chr9:136412518-136412518|A/C|missense_variant	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2850952148438	2	518.284734	1034.55492	1.5708	0.00081412	-0.84966	-0.00044036	0.72115	0.00037376	518.2843039602803	34.64	0.43817	34.64	34.495	34.933	0					25	11	3	0	0	0	0.034359	1	13364	13364		104.75	31.867	1	802370			22957	5821	14786	14844	23284	23284					0.03902064168460129
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF;PMPCA|p.E101D|1|0.05|ENSG00000165688|chr9:136412518-136412518|A/C|missense_variant	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2848510742188	2	518.284734	1034.55492	1.5772	0.00081745	-1.152	-0.00059708	0.42519	0.00022037	518.2841860288906	34.53	0.3583	34.53	34.426	34.784	0					17	7	3	0	0	0	0.071197	1	13279	13279		87.754	43.377	1	1722500			22958	5821	14786	14844	23285	23285					0.03902064168460129
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	ENST00000471737.1_1_6:36936681-36938521:-|nuORF	ENST00000471737.1_1_6:36936681-36938521:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.8297729492188	2	591.829506	1181.64446	0.25783	0.00015259	0.20148	0.00011924	0.45932	0.00027184	591.8295344841907	43.653	0.29871	43.653	43.573	43.871	0					44	16	4	0	0	0	0.27396	1	16430	16430		76.17	21.393	1	438120			22959	4163	14787	14845	23286	23286					0.06090274057191891
KYLWETLF	8	Unmodified	_KYLWETLF_					0	0	0			REV__ENST00000568126.5_1_16:19729746-19775223:+|nuORF	REV__ENST00000568126.5_1_16:19729746-19775223:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.293212890625	2	550.294768	1098.57498	-1.4176	-0.00078009	-1.3873	-0.00076344	-2.8049	-0.0015435	550.2939678236978	27.37	0.25683	27.37	27.279	27.536	0					13	6	3	0	0	0	0.35045	1	8935	8935		76.847	12.639	1	380810	+		22960	20358	14788	14846	23287	23287					0.029638151084100173
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.3162841796875	2	595.316232	1188.61791	0.062675	3.7311E-05	0.4243	0.00025259	0.48698	0.0002899	595.3164466656091	32.822	0.35066	32.822	32.743	33.094	0					17	8	3	0	0	0	0.11411	1	12496	12496		76.17	30.197	1	336560			22961	2007	14789	14847	23288	23288					0.031145851658493484
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.317138671875	2	595.316232	1188.61791	-1.8159	-0.001081	2.517	0.0014984	0.70108	0.00041736	595.3175119584072	32.655	0.23641	32.655	32.569	32.805	0					10	7	2	0	0	0	0.28504	1	11370	11370		51.528	12.774	1	63802			22962	2007	14789	14847	23289	23289					0.031145851658493484
KYMLKANLI	9	Unmodified	_KYMLKANLI_					0	0	0		ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.12|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.3258666992188	2	547.325545	1092.63654	1.8544	0.0010149	-1.5264	-0.00083544	0.32795	0.00017949	547.3247013381491	35.078	0.24662	35.078	34.993	35.24	0					11	6	2	0	0	0	0.2873	1	13139	13139		51.335	15.717	1	146990			22963	5661	14790	14848	23290	23290					0.09392423536064598
KYMQKSLEL	9	Unmodified	_KYMQKSLEL_					0	0	0		TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant	TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.3097534179688	2	570.310092	1138.60563	1.7518	0.00099908	-1.2799	-0.00072993	0.47194	0.00026915	570.3090915757688	28.849	0.17124	28.849	28.769	28.94	0					8	4	2	0	0	0	0.076532	1	10253	10253		85.862	6.1492	1	133080			22964	5602	14791	14849	23291	23291					0.04187225431155639
KYMQKSLEL	9	Unmodified	_KYMQKSLEL_					0	0	0		TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant	TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.3102416992188	2	570.310092	1138.60563	0.24193	0.00013797	0.7139	0.00040714	0.95583	0.00054512	570.3102885189259	28.806	0.21755	28.806	28.707	28.925	0					9	4	3	0	0	0	0.0406	1	10472	10472		98.629	15.879	1	181540			22965	5602	14791	14849	23292	23292					0.04187225431155639
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF;KDM2A|p.L300Cfs*10|1|0.4|ENSG00000173120|chr11:67219340-67219340|T/-|frameshift_variant	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.2805786132812	2	552.279649	1102.54475	1.3169	0.00072728	0.13881	7.666E-05	1.4557	0.00080394	552.2795611972299	41.502	0.13202	41.502	41.424	41.556	0					11	8	2	0	0	0	0.45358	1	13294	13294		37.159	4.3467	1	58467			22966	6406	14792	14850	23293	23293					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF;KDM2A|p.L300Cfs*10|1|0.4|ENSG00000173120|chr11:67219340-67219340|T/-|frameshift_variant	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.2798461914062	2	552.279649	1102.54475	0.60784	0.0003357	0.63838	0.00035256	1.2462	0.00068826	552.2800882664164	41.806	0.39237	41.806	41.713	42.105	0					36	19	3	0	0	0	0.047412	1	15858	15858		96.19	19.344	1	429580			22967	6406	14792	14850	23294	23294					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF;KDM2A|p.L300Cfs*10|1|0.4|ENSG00000173120|chr11:67219340-67219340|T/-|frameshift_variant	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2796020507812	2	552.279649	1102.54475	0.085386	4.7157E-05	0.7787	0.00043006	0.86409	0.00047722	552.2799617344939	41.772	0.30788	41.772	41.672	41.98	0					30	13	3	0	0	0	0.4966	1	16403	16403		32.812	7.2384	1	343200			22968	6406	14792	14850	23295	23295					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF;KDM2A|p.L300Cfs*10|1|0.4|ENSG00000173120|chr11:67219340-67219340|T/-|frameshift_variant	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.2791748046875	2	552.279649	1102.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.533	1	41.533	41.033	42.033	0								0	0	0	0.30504	1	14629	14629		34.173	0	1				22969	6406	14792	14850	23296	23296					-0.0024254355678294814
KYNDFGNSF	9	Unmodified	_KYNDFGNSF_					0	0	0		ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	ENSG00000166526|ENST00000299667|ZNF3	ENSG00000166526|ENST00000299667|ZNF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.2439575195312	2	546.243264	1090.47197	0.42466	0.00023197	0.56013	0.00030597	0.98479	0.00053794	546.243457246884	35.634	0.38084	35.634	35.484	35.865	0					19	10	3	0	0	0	0.13726	1	13354	13354		70.816	23.159	1	305730			22970	5912	14793	14851	23297	23297					-0.06964297350191373
KYNDFGNSF	9	Unmodified	_KYNDFGNSF_					0	0	0		ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	ENSG00000166526|ENST00000299667|ZNF3	ENSG00000166526|ENST00000299667|ZNF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2445068359375	2	546.243264	1090.47197	1.8781	0.0010259	-0.87684	-0.00047897	1.0012	0.0005469	546.2429361631678	35.606	0.40625	35.606	35.49	35.896	0					20	11	3	0	0	0	0.047855	1	13806	13806		96.034	32.727	1	325380			22971	5912	14793	14851	23298	23298					-0.06964297350191373
KYNDFGNSF	9	Unmodified	_KYNDFGNSF_					0	0	0		ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	ENSG00000166526|ENST00000299667|ZNF3	ENSG00000166526|ENST00000299667|ZNF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2433471679688	2	546.243264	1090.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.39	1	35.39	34.89	35.89	0								0	0	0	0.17415	1	12604	12604		54.722	5.2808	1				22972	5912	14793	14851	23299	23299					-0.06964297350191373
KYNGEPVQI	9	Unmodified	_KYNGEPVQI_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.27685546875	2	524.277106	1046.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.408	1	30.408	29.908	30.908	0								0	0	0	0.18645	1	9688	9688		52.937	3.4952	1				22973	3517	14794	14852	23300	23300					0.01825152580613576
KYNPTRNSN	9	Unmodified	_KYNPTRNSN_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2732543945312	2	547.272887	1092.53122	3.8278	0.0020948	-4.4553	-0.0024383	-0.62754	-0.00034343	547.2710849600954	35.007	0.56424	35.007	34.8	35.364	0					20	11	3	0	0	0	0.13726	1	13489	13489		70.816	12.57	1	545550			22974	5959	14795	14853	23301	23301					-0.011344013360030658
KYPAAHGT	8	Unmodified	_KYPAAHGT_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.71905517578125	2	422.719227	843.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.428	1	14.428	13.928	14.928	0								0	0	0	1.7419	1	3587	3587		26.796	0	1		+		22975	14588	14796	14854	23302	23302					-0.004073264795920295
KYPLGRQI	8	Unmodified	_KYPLGRQI_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3;ENST00000528393.1_1_11:79699709-79699943:+|nuORF	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7923583984375	2	487.792727	973.5709	0.46423	0.00022645	-1.133	-0.00055267	-0.66877	-0.00032622	487.7919919329677	25.531	0.11749	25.531	25.443	25.561	0					5	3	2	0	0	0	0.77246	1	8135	8135		24.203	1.1603	1	38159			22976	3983	14797	14855	23303	23303					0.08305770405377189
KYPNLLNQ	8	Unmodified	_KYPNLLNQ_					0	0	0		ENST00000530657.1_1_11:85906626-85907241:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000528400.1_1_8:42939784-42940422:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.77691650390625	2	495.274367	988.53418	2.8351	0.0014042	-0.31611	-0.00015656	2.519	0.0012476	495.27427762552486	30.368	0.30965	30.368	30.115	30.425	0					16	6	4	0	0	0	0.60719	1	11176	11176		47.916	5.4411	1	4001000			22977	6100	14798	14856	23304	23304					0.03945473788803611
KYPNMFKKI	9	Unmodified	_KYPNMFKKI_					0	0	0		nc|ENSG00000158467|Q96HN2-2|AHCYL2;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;TNPO3-AHCYL2|1|fusion;ENSG00000158467|ENST00000325006|AHCYL2;ENST00000492628.1_1_7:129040195-129045055:+|nuORF	nc|ENSG00000158467|Q96HN2-2|AHCYL2	nc|ENSG00000158467|Q96HN2-2|AHCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	390.2230529785156	3	390.223088	1167.64744	0.48737	0.00019018	-0.69947	-0.00027295	-0.21211	-8.277E-05	390.5575749648122	28.096	2.7043	28.096	27.493	30.197	0					144	54	5	0	0	0	0.13267	3	10345	10082;10155;10345		71.877	14.671	1	1272300			22978	11607	14799	14857	23305;23306;23307	23307					0.07031825910348743
KYPREEHL	8	Unmodified	_KYPREEHL_					0	0	0			REV__ENSG00000160908|ENST00000337673|ZNF394	REV__ENSG00000160908|ENST00000337673|ZNF394	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.2831420898438	2	536.282723	1070.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.103	1	25.103	24.603	25.603	0								0	0	0	1.7419	1	7932	7932		29.15	0	1		+		22979	15770	14800	14858	23308	23308					0.01843974674761739
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7818298339844	2	497.782025	993.549496	-0.055887	-2.782E-05	-0.24647	-0.00012269	-0.30236	-0.00015051	497.7818463112765	30.22	0.29771	30.22	30.102	30.4	0					25	10	3	0	0	0	0.012915	1	9585	9585		134.81	55.098	1	769660			22980	4497	14801	14859	23309	23309					0.052463405860066814
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7816467285156	2	497.782025	993.549496	-0.28513	-0.00014193	-0.077433	-3.8545E-05	-0.36256	-0.00018048	497.7819289718734	30.523	0.43138	30.523	30.311	30.742	0					18	10	2	0	0	0	0.0059092	1	10999	10999		154.12	69.203	1	4274500			22981	4497	14801	14859	23310	23310					0.052463405860066814
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7830505371094	2	497.782025	993.549496	-1.3207	-0.00065742	1.3822	0.00068802	0.061484	3.0606E-05	497.7827194714318	30.261	0.23318	30.261	30.182	30.415	0					16	7	3	0	0	0	0.078509	1	9903	9903		85.161	10.906	1	436250			22982	4497	14801	14859	23311	23311					0.052463405860066814
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7819519042969	2	497.782025	993.549496	-0.71823	-0.00035752	0.68787	0.00034241	-0.030358	-1.5112E-05	497.7823364585389	30.488	0.39081	30.488	30.334	30.725	0					19	8	3	0	0	0	0.012231	1	11387	11387		136.27	51.353	1	2669500			22983	4497	14801	14859	23312	23312					0.052463405860066814
KYQDILNEI	9	Unmodified	_KYQDILNEI_					0	0	0		IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.3049926757812	2	568.303321	1134.59209	3.4647	0.001969	-1.1535	-0.00065554	2.3112	0.0013134	568.3027675690986	46.301	0.18409	46.301	46.232	46.416	0					18	8	3	0	0	0	0.10506	1	18525	18525		78.264	12.798	1	104850			22984	4684	14802	14860	23313	23313					0.030176909235706262
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7857055664062	2	554.785296	1107.55604	1.3098	0.00072666	-0.79048	-0.00043855	0.51933	0.00028812	554.7848254900109	27.638	0.41124	27.638	27.523	27.934	0					41	13	5	0	0	0	0.21419	1	8513	8513		59.931	5.1545	1	8160100			22985	3989	14803	14861	23314	23314					0.006562337467130419
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7850952148438	2	554.785296	1107.55604	0.59602	0.00033066	-0.58916	-0.00032686	0.0068554	3.8033E-06	554.7850316569546	27.871	0.90622	27.871	27.736	28.643	0					58	22	6	0	0	0	5.4275E-05	1	9771	9771		195.05	36.971	1	34872000			22986	3989	14803	14861	23315	23315					0.006562337467130419
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7855224609375	2	554.785296	1107.55604	-0.047708	-2.6468E-05	0.17036	9.4512E-05	0.12265	6.8044E-05	554.7854200839711	27.889	0.78349	27.889	27.781	28.565	0					39	16	5	0	0	0	0.0016668	1	10140	10140		176.44	31.289	1	14500000			22987	3989	14803	14861	23316	23316					0.006562337467130419
KYQEVTNNLEF	11	Unmodified	_KYQEVTNNLEF_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	692.8406372070312	2	692.840799	1383.66705	-1.8393	-0.0012744	2.0052	0.0013893	0.16583	0.0001149	692.8416905752711	39.26	0.16209	39.26	39.18	39.342	0					10	5	2	0	0	0	0.2545	1	14941	14941		58.63	5.5406	1	66548			22988	3989	14804	14862	23317	23317					-0.009441713358683046
KYQGVTQGF	9	Unmodified	_KYQGVTQGF_					0	0	0		ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26	ENST00000479727.1_1_1:224585697-224586694:-|nuORF	ENST00000479727.1_1_1:224585697-224586694:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2643432617188	2	514.263999	1026.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.771	1	29.771	29.271	30.271	0								0	0	0	0.22075	1	11060	11060		47.96	16.005	1				22989	5511	14805	14863	23318	23318					0.0012488340912568674
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		HPS3|p.N332Kfs*31|1|0.34|ENSG00000163755|chr3:149145372-149145373|-/A|frameshift_variant;ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3	HPS3|p.N332Kfs*31|1|0.34|ENSG00000163755|chr3:149145372-149145373|-/A|frameshift_variant	HPS3|p.N332Kfs*31|1|0.34|ENSG00000163755|chr3:149145372-149145373|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.3036499023438	2	592.303321	1182.59209	0.26842	0.00015899	0.14789	8.7595E-05	0.41631	0.00024658	592.3033562073259	41.04	0.24716	41.04	40.96	41.207	0					25	11	3	0	0	0	0.035062	1	15597	15597		104.06	36.563	1	388240			22990	5605	14806	14864	23319	23319					0.008096909235518979
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.8112182617188	2	578.811116	1155.60768	1.7285	0.0010005	-1.6057	-0.00092942	0.12275	7.1048E-05	578.8101893484546	39.037	1.3635	39.037	38.824	40.188	0					48	30	3	0	0	0	0.019882	1	15376	15376		122.18	31.806	1	279590			22991	1402	14807	14865	23320	23320					0.03610022231282528
KYRDNQKE	8	Unmodified	_KYRDNQKE_					0	0	0		tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7771606445312	2	540.775262	1079.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.536	1	24.536	24.036	25.036	0								0	0	0	1.7419	1	7523	7523		30.504	1.3541	1				22992	22642	14808	14866	23321	23321					-0.0006151719326226157
KYRLDDQTNQS	11	Unmodified	_KYRLDDQTNQS_					0	0	0			REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	684.328125	2	684.33113	1366.64771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.513	1	32.513	32.013	33.013	0								0	0	0	0.35107	1	10516	10516		45.022	6.2686	1		+		22993	21181	14809	14867	23322	23322					-0.020951276267624053
KYRLDDQTNQS	11	Unmodified	_KYRLDDQTNQS_					0	0	0			REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	684.3291015625	2	684.33113	1366.64771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.587	1	31.587	31.087	32.087	0								0	0	0	0.31865	1	10895	10895		49.536	9.4779	1		+		22994	21181	14809	14867	23323	23323					-0.020951276267624053
KYRSTKIQI	9	Unmodified	_KYRSTKIQI_					0	0	0		DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant	DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant	DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.56561279296875	3	379.564391	1135.67134	3.2427	0.0012308	0.41176	0.00015629	3.6544	0.0013871	379.56449204329647	28.6	3.6042	28.6	26.772	30.376	0					180	72	4	0	0	0	0.24334	1	10411	10411		56.434	14.096	1	871650			22995	809	14810	14868	23324	23324					0.10893382668359664
KYRVEKAARG	10	Unmodified	_KYRVEKAARG_					0	0	0		ENSG00000171773|ENST00000301944|NXNL1	ENSG00000171773|ENST00000301944|NXNL1	ENSG00000171773|ENST00000301944|NXNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.3430786132812	2	589.343646	1176.67274	0.16364	9.6438E-05	-0.68028	-0.00040092	-0.51664	-0.00030448	589.3430874599201	51.896	0.72102	51.896	51.593	52.314	0					61	43	3	0	0	0	0.68774	1	18434	18434		23.523	4.4192	1	88982			22996	6318	14811	14869	23325	23325					0.09147016757128767
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.305908203125	2	535.305667	1068.59678	1.2312	0.00065905	0.22021	0.00011788	1.4514	0.00077693	535.3057180417884	31.897	0.21583	31.897	31.794	32.01	0					19	8	3	0	0	0	0.17854	1	10261	10261		64.207	12.872	1	132430			22997	4564	14812	14870	23326	23326					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3062133789062	2	535.305667	1068.59678	1.8041	0.00096574	-1.735	-0.00092876	0.069083	3.698E-05	535.3050102666705	32.134	0.66007	32.134	31.99	32.65	0					24	15	2	0	0	0	0.076532	1	12170	12170		85.862	45.084	1	1386500			22998	4564	14812	14870	23327	23327					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.3076782226562	2	535.305667	1068.59678	2.1201	0.0011349	-0.066269	-3.5474E-05	2.0538	0.0010994	535.3057969982499	31.961	0.21718	31.961	31.847	32.064	0					10	6	2	0	0	0	0.30841	1	11029	11029		49.536	13.918	1	69857			22999	4564	14812	14870	23328	23328					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.3060302734375	2	535.305667	1068.59678	1.0802	0.00057826	0.62725	0.00033577	1.7075	0.00091403	535.3059462418867	31.931	0.27922	31.931	31.84	32.119	0					17	8	3	0	0	0	0.42902	1	11024	11024		39.253	5.0803	1	116450			23000	4564	14812	14870	23329	23329					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.305908203125	2	535.305667	1068.59678	0.70672	0.00037831	0.10793	5.7773E-05	0.81465	0.00043609	535.3056445361614	32.076	0.62134	32.076	31.969	32.59	0					20	12	2	0	0	0	0.020674	1	12045	12045		120.87	63.057	1	2007500			23001	4564	14812	14870	23330	23330					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.3060302734375	2	535.305667	1068.59678	1.8821	0.0010075	-1.2149	-0.00065032	0.66722	0.00035717	535.3050372930179	32.111	0.87076	32.111	31.952	32.823	0					37	17	4	0	0	0	0.0097668	1	12059	12059		141.52	75.717	1	2996600			23002	4564	14812	14870	23331	23331					0.06522619856991696
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.8427124023438	2	546.842416	1091.67028	0.45755	0.00025021	0.48778	0.00026674	0.94533	0.00051695	546.8428289912601	21.873	0.2972	21.873	21.781	22.078	0					15	9	3	0	0	0	0.16806	1	6355	6355		65.465	16.024	1	153740			23003	7262	14813	14871	23332	23332					0.12811168299458586
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.8428344726562	2	546.842416	1091.67028	1.8505	0.0010119	-1.2586	-0.00068828	0.59182	0.00032363	546.8418333929724	22.014	0.31327	22.014	21.907	22.22	0					17	6	4	0	0	0	0.0080613	1	7403	7403		145.16	48.965	1	2042100			23004	7262	14813	14871	23333	23333					0.12811168299458586
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.8973693847656	3	364.89737	1091.67028	0.48334	0.00017637	-0.44554	-0.00016258	0.037797	1.3792E-05	364.8971714400686	21.997	0.70993	21.997	21.89	22.6	0					37	14	4	0	0	0	0.098791	1	7390	7390		85.862	24.171	1	3331200			23005	7262	14813	14871	23334	23334					0.12811168299458586
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.8432006835938	2	546.842416	1091.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.927	1	21.927	21.427	22.427	0								0	0	0	0.12601	1	6444	6444		65.465	21.349	1				23006	7262	14813	14871	23335	23335					0.12811168299458586
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.843017578125	2	546.842416	1091.67028	-1.5027	-0.00082172	2.4062	0.0013158	0.90355	0.0004941	546.8436087699064	21.896	0.27456	21.896	21.837	22.111	0					13	6	3	0	0	0	0.24334	1	6437	6437		56.434	33.391	1	215040			23007	7262	14813	14871	23336	23336					0.12811168299458586
KYSNMEQSLF	10	Unmodified	_KYSNMEQSLF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	623.7915649414062	2	623.792263	1245.56997	0.63996	0.0003992	-1.77	-0.0011041	-1.13	-0.0007049	623.7916377390632	40.798	0.17924	40.798	40.735	40.914	0					8	4	3	0	0	0	0.44601	1	15547	15547		51.193	8.3284	1	148350			23008	1107	14814	14872	23337	23337					-0.04298856816512853
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7892456054688	2	537.286943	1072.55933	3.3427	0.001796	-2.047	-0.0010998	1.2957	0.00069617	537.285648687826	48.951	0.26686	48.951	48.878	49.145	0					25	15	3	0	0	0	0.44593	1	19404	19404		37.812	2.1932	1	121730			23009	1747	14815	14873	23338	23338					0.0259552859138239
KYSRKALPF	9	Unmodified	_KYSRKALPF_					0	0	0			REV__ENST00000567004.1_1_16:22086865-22087021:+|nuORF	REV__ENST00000567004.1_1_16:22086865-22087021:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.3284301757812	2	555.326934	1108.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.159	1	42.159	41.659	42.659	0								0	0	0	0.28996	1	15987	15987		37.159	4.3467	1		+		23010	20146	14816	14874	23339	23339					0.08934014985220529
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.76904296875	2	512.769114	1023.52368	-0.058648	-3.0073E-05	0.48327	0.00024781	0.42462	0.00021773	512.769332750114	28.703	0.18666	28.703	28.635	28.822	0					14	7	3	0	0	0	0.19952	1	8972	8972		61.691	17.574	1	140490			23011	1870	14817	14875	23340	23340					0.01285446343717922
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.769287109375	2	512.769114	1023.52368	0.0093194	4.7787E-06	0.38936	0.00019965	0.39868	0.00020443	512.7692529261302	28.965	0.25582	28.965	28.874	29.129	0					16	6	3	0	0	0	0.082776	1	10284	10284		83.647	26.194	1	787020			23012	1870	14817	14875	23341	23341					0.01285446343717922
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7695922851562	2	512.769114	1023.52368	-0.12099	-6.2038E-05	0.8463	0.00043395	0.72531	0.00037192	512.7696216075136	28.696	0.161	28.696	28.637	28.798	0					9	6	2	0	0	0	0.17062	1	9277	9277		65.157	27.998	1	65108			23013	1870	14817	14875	23342	23342					0.01285446343717922
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.769287109375	2	512.769114	1023.52368	-0.46045	-0.0002361	0.55679	0.0002855	0.096341	4.9401E-05	512.7694032542953	28.999	0.20966	28.999	28.894	29.104	0					11	4	3	0	0	0	0.061298	1	10677	10677		91.265	35.761	1	396280			23014	1870	14817	14875	23343	23343					0.01285446343717922
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7684326171875	2	512.769114	1023.52368	-1.6894	-0.00086626	1.5081	0.00077331	-0.18126	-9.2946E-05	512.7697899266454	28.756	0.09436	28.756	28.699	28.793	0					4	2	2	0	0	0	0.17062	1	9590	9590		65.157	8.4362	1	112800			23015	1870	14817	14875	23344	23344					0.01285446343717922
KYTIKEARK	9	Unmodified	_KYTIKEARK_					0	0	0			REV__tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	REV__tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.5656433105469	3	379.564391	1135.67134	3.2427	0.0012308	0.41176	0.00015629	3.6544	0.0013871	379.56449204329647	28.6	3.6042	28.6	26.772	30.376	0					180	72	4	0	0	0	0.28897	1	10172	10172		51.193	1.6567	1	871650	+		23016	21691	14818	14876	23345	23345					0.10893382668359664
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.308349609375	2	588.308406	1174.60226	0.14866	8.746E-05	0.30683	0.00018051	0.4555	0.00026797	588.308808391242	37.047	0.3275	37.047	36.93	37.257	0					15	9	2	0	0	0	0.18282	1	14002	14002		65.157	20.78	1	173530			23017	1077	14819	14877	23346	23346					0.02194298648782933
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.3082275390625	2	588.308406	1174.60226	1.455	0.00085601	-0.99636	-0.00058617	0.45867	0.00026984	588.3079104829026	37.001	0.5717	37.001	36.894	37.466	0					31	17	3	0	0	0	0.15593	1	14423	14423		68.846	22.894	1	260940			23018	1077	14819	14877	23347	23347					0.02194298648782933
KYTNLFNKL	9	Unmodified	_KYTNLFNKL_					0	0	0			REV__tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	REV__tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.8851318359375	3	380.885241	1139.63389	0.82637	0.00031475	-0.74148	-0.00028242	0.084892	3.2334E-05	380.8848396446688	21.179	0.18792	21.179	21.093	21.281	0					9	4	3	0	0	0	0.51817	1	6706	6706		23.523	0	1	507740	+		23019	22195	14820	14878	23348	23348					0.06966291402750358
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2959594726562	2	545.295633	1088.57671	1.1898	0.00064879	-0.96914	-0.00052847	0.22066	0.00012032	545.2951417292451	18.428	0.15667	18.428	18.346	18.503	0					17	6	3	0	0	0	0.032052	1	4573	4573		90.777	44.825	1	365280			23020	6105	14821	14879	23349	23349					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.8659362792969	3	363.866181	1088.57671	0.098944	3.6002E-05	-0.22948	-8.3499E-05	-0.13053	-4.7496E-05	363.8660417042331	18.445	0.15667	18.445	18.346	18.503	0					16	6	3	0	0	0	0.19605	1	4576	4576		62.107	9.1707	1	396200			23021	6105	14821	14879	23350	23350					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2958374023438	2	545.295633	1088.57671	0.39705	0.00021651	0.39937	0.00021778	0.79642	0.00043429	545.2956736670218	18.72	1.1175	18.72	18.588	19.706	0					50	27	3	0	0	0	0.032052	1	5513	5513		102.77	25.927	1	2505700			23022	6105	14821	14879	23351	23351					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.8662109375	3	363.866181	1088.57671	0.47724	0.00017365	-0.40257	-0.00014648	0.074669	2.717E-05	363.86605863548056	18.759	1.1578	18.759	18.588	19.746	0					39	28	2	0	0	0	0.0406	1	5531	5531		98.629	57.203	1	2310100			23023	6105	14821	14879	23352	23352					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.2963256835938	2	545.295633	1088.57671	0.5257	0.00028666	-0.61778	-0.00033687	-0.092081	-5.0211E-05	545.2952604006472	18.435	0.13954	18.435	18.308	18.448	0					7	5	2	0	0	0	0.11898	1	4814	4814		68.787	13.283	1	70024			23024	6105	14821	14879	23353	23353					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.296142578125	2	545.295633	1088.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.417	1	18.417	17.917	18.917	0								0	0	0	0.17378	1	4806	4806		38.806	6.8513	1				23025	6105	14821	14879	23354	23354					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.8663635253906	3	363.866181	1088.57671	-0.102	-3.7113E-05	-0.40549	-0.00014754	-0.50749	-0.00018466	364.2003829172845	18.618	0.33638	18.618	18.439	18.775	0					11	9	2	0	0	0	0.13267	1	4855	4855		71.877	20.685	1	143170			23026	6105	14821	14879	23355	23355					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.2958984375	2	545.295633	1088.57671	-1.4974	-0.00081651	1.6231	0.00088509	0.12576	6.8577E-05	545.2964207097119	18.511	0.18032	18.511	18.398	18.578	0					12	5	3	0	0	0	0.025517	1	4833	4833		97.473	41.968	1	345050			23027	6105	14821	14879	23356	23356					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.8660888671875	3	363.866181	1088.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.48	1	18.48	17.98	18.98	0								0	0	0	0.024201	1	4831	4831		98.629	47.437	1				23028	6105	14821	14879	23357	23357					0.03596868917043139
KYTQDLSLVT	10	Unmodified	_KYTQDLSLVT_					0	0	0		RDH16|p.C257Y|1|0.3|ENSG00000139547|chr12:56952213-56952213|C/T|missense_variant	RDH16|p.C257Y|1|0.3|ENSG00000139547|chr12:56952213-56952213|C/T|missense_variant	RDH16|p.C257Y|1|0.3|ENSG00000139547|chr12:56952213-56952213|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.3146362304688	2	584.316428	1166.6183	0.11604	6.7802E-05	-1.4942	-0.00087309	-1.3782	-0.00080529	584.3152299201975	36.192	0.31381	36.192	36.081	36.395	0					12	6	3	0	0	0	0.36647	1	14031	14031		47.657	0	1	109900			23029	12013	14822	14880	23358	23358					0.04165960095019727
KYTRSLSSVL	10	Unmodified	_KYTRSLSSVL_					0	0	0			REV__ENSG00000196549|ENST00000360490|MME	REV__ENSG00000196549|ENST00000360490|MME	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.3348388671875	2	577.332413	1152.65027	3.2778	0.0018924	0.57651	0.00033284	3.8543	0.0022252	577.3328085315901	36.538	0.4677	36.538	36.395	36.863	0					24	9	4	0	0	0	0.049666	1	14207	14207		98.629	45.693	1	1021100	+		23030	17268	14823	14881	23359	23359					0.08005372568845814
KYTYWKLILPP	11	Unmodified	_KYTYWKLILPP_					0	0	0		ENST00000467753.1_1_6:127838847-127838898:-|nuORF	ENST00000467753.1_1_6:127838847-127838898:-|nuORF	ENST00000467753.1_1_6:127838847-127838898:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	711.4103393554688	2	711.413206	1420.81186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.292	1	35.292	34.792	35.792	0								0	0	0	0.45674	1	11566	11566		17.468	0.75062	1				23031	9802	14824	14882	23360	23360					0.11828541601948928
KYVDTNVVG	9	Unmodified	_KYVDTNVVG_					0	0	0			REV__ENSG00000169084|ENST00000334651|DHRSX	REV__ENSG00000169084|ENST00000334651|DHRSX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.765869140625	2	497.763832	993.513111	2.915	0.001451	1.0703	0.00053277	3.9853	0.0019838	497.7646791056173	14.001	0.4567	14.001	13.834	14.29	0					29	9	5	0	0	0	0.17854	1	3387	3387		64.207	0	1	694020	+		23032	16292	14825	14883	23361	23361					0.01609463689283075
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		WDR35|p.R782*|1|0.2|ENSG00000118965|chr2:19936322-19936323|-/A|frameshift_variant;ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	WDR35|p.R782*|1|0.2|ENSG00000118965|chr2:19936322-19936323|-/A|frameshift_variant	WDR35|p.R782*|1|0.2|ENSG00000118965|chr2:19936322-19936323|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.8263244628906	2	510.826235	1019.63792	1.2096	0.00061787	-1.1973	-0.00061159	0.012305	6.2858E-06	510.8255160194248	34.382	0.28249	34.382	34.303	34.585	0					14	7	3	0	0	0	0.28897	1	13259	13259		51.193	3.5354	1	167230			23033	3090	14826	14884	23362	23362					0.1288838089649289
KYVPRAILVD	10	Unmodified	_KYVPRAILVD_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.9036560058594	3	391.904524	1172.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.575	1	11.575	11.075	12.075	0								0	0	0	0.4201	1	2259	2259		16.007	1.1419	1				23034	7342	14827	14885	23363	23363					0.11230553328164206
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2835083007812	2	515.2844	1028.55425	0.029521	1.5212E-05	-0.090849	-4.6813E-05	-0.061327	-3.1601E-05	515.2843417737913	43.128	0.24426	43.128	43.041	43.286	0					22	13	3	0	0	0	0.16806	1	16288	16288		65.465	31.293	1	134230			23035	7626	14828	14886	23364	23364					0.04111224728740126
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2844848632812	2	515.2844	1028.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.028	1	43.028	42.528	43.528	0								0	0	0	0.029433	1	17204	17204		96.034	38.222	1				23036	7626	14828	14886	23365	23365					0.04111224728740126
KYVTVYNLI	9	Unmodified	_KYVTVYNLI_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;USP8|p.R138Kfs*14|1|0.27|ENSG00000138592|chr15:50459070-50459071|-/A|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant;USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.8212890625	2	556.82115	1111.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.195	1	48.195	47.695	48.695	0								0	0	0	0.10826	1	19168	19168		69.628	20.186	1				23037	4266	14829	14887	23366	23366					0.07639773171217712
KYVYVVTEL	9	Unmodified	_KYVYVVTEL_					0	0	0		RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant;ENSG00000177189|ENST00000379565|RPS6KA3	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.3134155273438	2	557.313158	1112.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.677	1	42.677	42.177	43.177	0								0	0	0	0.14033	1	16148	16148		62.107	7.3311	1				23038	6652	14830	14888	23367	23367					0.05996066934335431
KYYAPMLND	9	Unmodified	_KYYAPMLND_					0	0	0			REV__CYP21A2|p.V306Afs*8|1|0.05|ENSG00000231852|chr6:32040182-32040183|-/C|frameshift_variant	REV__CYP21A2|p.V306Afs*8|1|0.05|ENSG00000231852|chr6:32040182-32040183|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7644653320312	2	557.765517	1113.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.712	1	27.712	27.212	28.212	0								0	0	0	0.3368	1	8863	8863		27.882	1.1893	1		+		23039	12658	14831	14889	23368	23368					-0.03573609528348243
KYYKGSLS	8	Unmodified	_KYYKGSLS_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2530822753906	2	473.255643	944.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.194	1	22.194	21.694	22.694	0								0	0	0	1.7419	1	6496	6496		30.504	2.2494	1				23040	3058	14832	14890	23369	23369					0.022263825232016643
KYYKGSLSY	9	Unmodified	_KYYKGSLSY_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.7874145507812	2	554.787307	1107.56006	0.13894	7.7084E-05	0.18035	0.00010005	0.31929	0.00017714	554.7874608787865	35.074	0.95041	35.074	34.612	35.563	0					92	43	3	0	0	0	0.47038	1	11719	11719		35.618	0	1	131440			23041	3058	14833	14891	23370	23370					0.010583232404542287
KYYNKCQY	8	Unmodified	_KYYNKCQY_					0	0	0			REV__HP|p.R59C|1|0.18|ENSG00000257017|chr16:72056616-72056616|C/T|missense_variant	REV__HP|p.R59C|1|0.18|ENSG00000257017|chr16:72056616-72056616|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.2514038085938	2	555.257859	1108.50117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.095	1	35.095	34.595	35.595	0								0	0	0	1.7419	1	12475	12475		47.916	12.297	1		+		23042	17764	14834	14892	23371	23371					-0.04874476325562682
LAAAPAPLGPQ	11	Unmodified	_LAAAPAPLGPQ_					0	0	0		ENST00000354309.4_1_19:57752145-57759996:+|nuORF	ENST00000354309.4_1_19:57752145-57759996:+|nuORF	ENST00000354309.4_1_19:57752145-57759996:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.28936767578125	2	503.290017	1004.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.55	1	18.55	18.05	19.05	0								0	0	0	0.44116	1	5713	5713		27.882	3.6795	1				23043	8783	14835	14893	23372	23372					0.0633804682288428
LAADCAHEL	9	Unmodified	_LAADCAHEL_					0	0	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.72100830078125	2	471.72111	941.427666	-0.017724	-8.3607E-06	-0.61798	-0.00029152	-0.63571	-0.00029988	471.7210453823125	30.262	0.5508	30.262	30.109	30.66	0					29	20	3	0	0	0	0.05357	1	9605	9605		94.006	17.16	1	222430			23044	5214	14836	14894	23373	23373					-0.04539024768030231
LAADCAHEL	9	Unmodified	_LAADCAHEL_					0	0	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.72076416015625	2	471.72111	941.427666	0.19637	9.2631E-05	-0.34239	-0.00016151	-0.14602	-6.8881E-05	471.7207466175129	30.521	0.3489	30.521	30.405	30.754	0					27	8	4	0	0	0	0.027316	1	11007	11007		111.65	43.164	1	1710000			23045	5214	14836	14894	23374	23374					-0.04539024768030231
LAADCAHEL	9	Unmodified	_LAADCAHEL_					0	0	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7207946777344	2	471.72111	941.427666	-0.12364	-5.8323E-05	-0.17269	-8.1461E-05	-0.29633	-0.00013978	471.72080136948443	30.521	0.54967	30.521	30.416	30.965	0					24	12	4	0	0	0	0.062676	1	11404	11404		90.777	32.965	1	1223200			23046	5214	14836	14894	23375	23375					-0.04539024768030231
LAADCAHEL	9	Unmodified	_LAADCAHEL_					0	0	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7215270996094	2	471.72111	941.427666	-0.1762	-8.3117E-05	0.12973	6.1199E-05	-0.046464	-2.1918E-05	471.7210742695092	30.307	0.2607	30.307	30.197	30.457	0					16	6	4	0	0	0	0.20551	1	10295	10295		60.972	13.056	1	210140			23047	5214	14836	14894	23376	23376					-0.04539024768030231
LAADCAHEL	9	Unmodified	_LAADCAHEL_					0	0	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7207336425781	2	471.72111	941.427666	-0.55989	-0.00026411	0.21987	0.00010372	-0.34002	-0.0001604	471.7210013964631	30.294	0.40799	30.294	30.186	30.594	0					24	10	4	0	0	0	0.14603	1	10307	10307		68.787	13.283	1	310540			23048	5214	14836	14894	23377	23377					-0.04539024768030231
LAADCAHEL	9	Unmodified	_LAADCAHEL_					0	0	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7210998535156	2	471.72111	941.427666	-0.55755	-0.00026301	0.12215	5.7623E-05	-0.4354	-0.00020539	471.7211639220581	30.449	0.74937	30.449	30.294	31.043	0					22	15	2	0	0	0	0.018419	1	11283	11283		124.59	55.807	1	1321800			23049	5214	14836	14894	23378	23378					-0.04539024768030231
LAADCAHEL	9	Unmodified	_LAADCAHEL_					0	0	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7207946777344	2	471.72111	941.427666	0.59184	0.00027918	-1.0737	-0.00050647	-0.48183	-0.00022729	471.72056375494225	30.482	0.89678	30.482	30.277	31.174	0					32	18	3	0	0	0	0.14603	1	11301	11301		68.787	13.283	1	2142500			23050	5214	14836	14894	23379	23379					-0.04539024768030231
LAADCAHEL	9	Carbamidomethyl (C)	_LAADC(Carbamidomethyl (C))AHEL_	LAADC(1)AHEL		LAADC(120)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2319030761719	2	500.231842	998.44913	0.66076	0.00033053	-0.82719	-0.00041379	-0.16643	-8.3254E-05	500.2314727295492	27.382	0.17852	27.382	27.293	27.472	0					8	4	2	0	0	0	0.020824	1	9569	9569		120.62	58.514	1	425700			23051	5214	14836	14895	23380	23380	212				-0.050156397393152474
LAADCAHEL	9	Carbamidomethyl (C)	_LAADC(Carbamidomethyl (C))AHEL_	LAADC(1)AHEL		LAADC(66)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2320556640625	2	500.231842	998.44913	-1.0126	-0.00050655	1.1873	0.00059391	0.17465	8.7366E-05	500.23241546896855	27.162	0.15732	27.162	27.048	27.205	0					11	5	3	0	0	0	0.16002	1	8620	8620		66.429	30.811	1	121500			23052	5214	14836	14895	23381	23381	212				-0.050156397393152474
LAADCAHEL	9	Carbamidomethyl (C)	_LAADC(Carbamidomethyl (C))AHEL_	LAADC(1)AHEL		LAADC(93)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2316589355469	2	500.231842	998.44913	0.89858	0.0004495	0.26386	0.00013199	1.1624	0.00058149	500.2323764258595	27.394	0.51158	27.394	26.961	27.473	0					16	10	3	0	0	0	0.055856	1	9919	9919		93.195	43.985	1	756180			23053	5214	14836	14895	23382	23382	212				-0.050156397393152474
LAADCAHEL	9	Carbamidomethyl (C)	_LAADC(Carbamidomethyl (C))AHEL_	LAADC(1)AHEL		LAADC(51)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.23223876953125	2	500.231842	998.44913	0.15758	7.8824E-05	0.050833	2.5428E-05	0.20841	0.00010425	500.23196556249013	27.21	0.17761	27.21	27.129	27.306	0					6	4	2	0	0	0	0.2873	1	8882	8882		51.335	12.314	1	133730			23054	5214	14836	14895	23383	23383	212				-0.050156397393152474
LAADCAHEL	9	Carbamidomethyl (C)	_LAADC(Carbamidomethyl (C))AHEL_	LAADC(1)AHEL		LAADC(46)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.23187255859375	2	500.231842	998.44913	-2.1411	-0.0010711	2.0251	0.001013	-0.11607	-5.8064E-05	500.23278106706584	27.205	0.13175	27.205	27.118	27.249	0					5	3	2	0	0	0	0.35045	1	8874	8874		45.952	8.7928	1	118300			23055	5214	14836	14895	23384	23384	212				-0.050156397393152474
LAADCAHEL	9	Carbamidomethyl (C)	_LAADC(Carbamidomethyl (C))AHEL_	LAADC(1)AHEL		LAADC(96)AHEL		0	1	0		ENST00000561137.5_1_14:24760413-24761527:-|nuORF;ENST00000561273.5_1_14:24760714-24761569:-|nuORF;ENST00000558340.1_1_14:24760067-24761569:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	ENST00000561137.5_1_14:24760413-24761527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2315368652344	2	500.231842	998.44913	1.0867	0.00054363	-1.4335	-0.00071709	-0.34678	-0.00017347	500.23115241731375	27.349	0.2205	27.349	27.238	27.459	0					7	4	2	0	0	0	0.047412	1	9790	9790		96.19	38.379	1	929980			23056	5214	14836	14895	23385	23385	212				-0.050156397393152474
LAADMDLHC	9	Carbamidomethyl (C),Oxidation (M)	_LAADM(Oxidation (M))DLHC(Carbamidomethyl (C))_	LAADMDLHC(1)	LAADM(1)DLHC	LAADMDLHC(66)	LAADM(66)DLHC	0	1	1		AMER2|p.S94Afs*8|1|0.33|ENSG00000165566|chr13:25171344-25171344|C/-|frameshift_variant;nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2	AMER2|p.S94Afs*8|1|0.33|ENSG00000165566|chr13:25171344-25171344|C/-|frameshift_variant	AMER2|p.S94Afs*8|1|0.33|ENSG00000165566|chr13:25171344-25171344|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2235107421875	2	531.223159	1060.43177	1.7213	0.0009144	-1.8292	-0.0009717	-0.10788	-5.7307E-05	531.2225622652553	25.297	0.22114	25.297	25.188	25.409	0					13	4	4	0	0	0	0.16524	1	8952	8952		65.803	21.686	1	1214800			23057	141	14837	14896	23386	23386	8	10			-0.09603303336621138
LAADMDLHC	9	Carbamidomethyl (C),Oxidation (M)	_LAADM(Oxidation (M))DLHC(Carbamidomethyl (C))_	LAADMDLHC(1)	LAADM(1)DLHC	LAADMDLHC(77)	LAADM(77)DLHC	0	1	1		AMER2|p.S94Afs*8|1|0.33|ENSG00000165566|chr13:25171344-25171344|C/-|frameshift_variant;nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2	AMER2|p.S94Afs*8|1|0.33|ENSG00000165566|chr13:25171344-25171344|C/-|frameshift_variant	AMER2|p.S94Afs*8|1|0.33|ENSG00000165566|chr13:25171344-25171344|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2235107421875	2	531.223159	1060.43177	1.6904	0.00089797	-1.5095	-0.00080187	0.18089	9.6095E-05	531.2226535005314	25.204	0.22207	25.204	25.093	25.315	0					12	4	4	0	0	0	0.11118	1	8808	8808		76.847	27.311	1	1149000			23058	141	14837	14896	23387	23387	8	10			-0.09603303336621138
LAAEGAGAGVS	11	Unmodified	_LAAEGAGAGVS_					0	0	0			REV__ENSG00000159958|ENST00000291232|TNFRSF13C	REV__ENSG00000159958|ENST00000291232|TNFRSF13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7314758300781	2	451.732532	901.45051	-1.1923	-0.00053861	0.68531	0.00030958	-0.50701	-0.00022903	451.732871563283	25.892	0.4989	25.892	25.655	26.154	0					27	12	3	0	0	0	0.63135	1	8167	8167		34.173	2.2177	1	338700	+		23059	15732	14838	14897	23388	23388					-0.0041568237888895965
LAAEREKLGM	10	Oxidation (M)	_LAAEREKLGM(Oxidation (M))_		LAAEREKLGM(1)		LAAEREKLGM(41)	0	0	1			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.5389709472656	3	378.537624	1132.59104	3.2485	0.0012297	0.32618	0.00012347	3.5746	0.0013531	378.53783734588364	27.316	1.1751	27.316	26.671	27.846	0					50	23	4	0	0	0	0.536	1	9758	9758		41.427	16.907	1	727740	+		23060	16807	14839	14898	23389	23389		642			0.030051532830157157
LAAFASFLSHA	11	Unmodified	_LAAFASFLSHA_					0	0	0		nc|ENSG00000175701|Q8NCU8-1|MTLN	nc|ENSG00000175701|Q8NCU8-1|MTLN	nc|ENSG00000175701|Q8NCU8-1|MTLN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.53643798828125	3	378.869591	1133.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.397	1	25.397	24.897	25.897	0								0	0	0	0.44926	1	7639	7639		26.063	2.5407	1				23061	11654	14840	14899	23390	23390					0.02549431851616646
LAAFASGNWL	10	Unmodified	_LAAFASGNWL_					0	0	0			REV__ENST00000478415.1_1_X:79999455-80064970:-|nuORF	REV__ENST00000478415.1_1_X:79999455-80064970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2723999023438	2	525.274367	1048.53418	1.1724	0.00061583	-4.1761	-0.0021936	-3.0037	-0.0015778	525.2719800542704	27.74	0.25915	27.74	27.616	27.875	0					9	6	3	0	0	0	0.2538	1	9133	9133		60.972	9.6365	1	109580	+		23062	12301	14841	14900	23391	23391					0.01185473788791569
LAAFHPIEVI	10	Unmodified	_LAAFHPIEVI_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.5497741699219	3	370.54997	1108.62808	0.77452	0.000287	-0.62727	-0.00023243	0.14726	5.4566E-05	370.54969578766173	34.298	0.3634	34.298	34.181	34.545	0					20	9	3	0	0	0	0.60613	1	12757	12757		37.812	0.30334	1	549950	+		23063	15268	14842	14901	23392	23392					0.07811192891085739
LAAFLTAGLA	10	Unmodified	_LAAFLTAGLA_					0	0	0			REV__nc|ENSG00000173349|Q587I9|SFT2D3	REV__nc|ENSG00000173349|Q587I9|SFT2D3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.28118896484375	2	474.28166	946.548768	0.29254	0.00013874	-3.0655	-0.0014539	-2.773	-0.0013152	474.28127448849335	38.744	0.32073	38.744	38.586	38.906	0					34	13	4	0	0	0	0.357	1	14721	14721		60.972	9.6365	1	271340	+		23064	21122	14843	14902	23393	23393					0.07335545936950894
LAAFLTAGLA	10	Unmodified	_LAAFLTAGLA_					0	0	0			REV__nc|ENSG00000173349|Q587I9|SFT2D3	REV__nc|ENSG00000173349|Q587I9|SFT2D3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7796630859375	2	474.28166	946.548768	0.70422	0.000334	-4.3895	-0.0020819	-3.6853	-0.0017479	474.2809369537098	38.628	0.69277	38.628	38.48	39.173	0					28	14	4	0	0	0	0.33577	1	15194	15194		63.306	2.3343	1	759000	+		23065	21122	14843	14902	23394	23394					0.07335545936950894
LAAGLGYGLL	10	Unmodified	_LAAGLGYGLL_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8;ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2816467285156	2	474.28166	946.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.5	1	38.5	38	39	0								0	0	0	0.38459	1	13773	13773		35.201	0	1				23066	5142	14844	14903	23395	23395					0.07335545936962262
LAAGSFHSIV	10	Unmodified	_LAAGSFHSIV_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.27447509765625	2	501.274367	1000.53418	-0.5772	-0.00028933	0.53571	0.00026854	-0.041483	-2.0794E-05	501.27467146405394	32.995	0.3199	32.995	32.9	33.22	0					15	7	3	0	0	0	0.40673	1	12577	12577		55.504	5.4797	1	691530	+		23067	21012	14845	14904	23396	23396					0.03393473788810297
LAAGTDFRS	9	Unmodified	_LAAGTDFRS_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;ENST00000554429.5_1_14:45565874-45579180:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2399597167969	2	469.240524	936.466495	0.019759	9.2718E-06	-0.97435	-0.00045721	-0.95459	-0.00044793	469.2399997902447	21.32	0.18591	21.32	21.209	21.395	0					7	5	2	0	0	0	0.47038	1	5850	5850		35.618	7.736	1	87193			23068	7066	14846	14905	23397	23397					-0.004279761419979877
LAAHQLINY	9	Unmodified	_LAAHQLINY_					0	0	0		ENST00000382031.5_1_15:43812898-43813209:+|nuORF	ENST00000382031.5_1_15:43812898-43813209:+|nuORF	ENST00000382031.5_1_15:43812898-43813209:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.790283203125	2	521.787641	1041.56073	5.1182	0.0026706	-2.7731	-0.001447	2.3451	0.0012236	521.7862271394156	39.838	0.19211	39.838	39.736	39.928	0					16	11	2	0	0	0	0.32741	1	13358	13358		47.916	0	1	81610			23069	9119	14847	14906	23398	23398					0.04161162680134112
LAAKMPWK	8	Unmodified	_LAAKMPWK_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7741394042969	2	472.772948	943.531344	-0.5284	-0.00024981	2.6806	0.0012673	2.1522	0.0010175	472.7740986347956	28.408	0.12773	28.408	28.325	28.453	0					5	3	2	0	0	0	0.68754	1	9417	9417		35.201	0	1	78027	+		23070	12733	14848	14907	23399	23399					0.05731927130295844
LAALFFYH	8	Unmodified	_LAALFFYH_					0	0	0			REV__ADGRL4|p.F505L|1|0.29|ENSG00000162618|chr1:78917999-78917999|A/G|missense_variant	REV__ADGRL4|p.F505L|1|0.29|ENSG00000162618|chr1:78917999-78917999|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2621154785156	2	491.263271	980.511988	-0.52975	-0.00026025	0.28321	0.00013913	-0.24654	-0.00012112	491.2627313285077	34.75	0.51234	34.75	34.481	34.993	0					45	13	5	0	0	0	0.42924	1	12949	12949		67.327	0.89792	1	1079200	+		23071	12093	14849	14908	23400	23400					0.020952941110294887
LAALPHSCL	9	Carbamidomethyl (C)	_LAALPHSC(Carbamidomethyl (C))L_	LAALPHSC(1)L		LAALPHSC(58)L		0	1	0		RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant;RGS5|p.P30Ffs*54|1|0.05|ENSG00000143248|chr1:163168325-163168326|-/AA|frameshift_variant;RGS5|p.N90Tfs*40|1|0.22|ENSG00000143248|chr1:163152665-163152665|T/-|frameshift_variant;ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2632751464844	2	491.262945	980.511337	-1.2596	-0.00061881	0.65283	0.00032071	-0.60679	-0.00029809	491.2632911439821	34.578	0.28207	34.578	34.379	34.661	0					16	12	2	0	0	0	0.23186	1	11661	11661		57.811	14.185	1	84095			23072	22341	14850	14909	23401	23401	750				0.02030131399669699
LAALPHSCL	9	Carbamidomethyl (C)	_LAALPHSC(Carbamidomethyl (C))L_	LAALPHSC(1)L		LAALPHSC(97)L		0	1	0		RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant;RGS5|p.P30Ffs*54|1|0.05|ENSG00000143248|chr1:163168325-163168326|-/AA|frameshift_variant;RGS5|p.N90Tfs*40|1|0.22|ENSG00000143248|chr1:163152665-163152665|T/-|frameshift_variant;ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2627868652344	2	491.262945	980.511337	2.7051	0.0013289	-1.8683	-0.00091781	0.83684	0.00041111	491.2613305984201	34.71	0.55545	34.71	34.409	34.964	0					40	11	5	0	0	0	0.043797	1	13319	13319		97.473	26.177	1	2145800			23073	22341	14850	14909	23402	23402	750				0.02030131399669699
LAALRPDPA	9	Unmodified	_LAALRPDPA_					0	0	0			REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.26824951171875	2	462.269084	922.523616	-0.80161	-0.00037056	-0.074485	-3.4432E-05	-0.87609	-0.00040499	462.2689980863215	19.398	0.1795	19.398	19.312	19.492	0					9	5	2	0	0	0	0.41354	1	5249	5249		40.573	1.3198	1	49113	+		23074	14740	14851	14910	23403	23403					0.059254911343600725
LAALSLLRQ	9	Unmodified	_LAALSLLRQ_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.81427001953125	2	492.813659	983.612765	-2.6156	-0.001289	2.4865	0.0012254	-0.12908	-6.3612E-05	492.8150156914637	27.45	0.17423	27.45	27.361	27.536	0					7	4	2	0	0	0	0.1115	1	8989	8989		76.774	10.345	1	94287			23075	7674	14852	14911	23404	23404					0.12030326093895383
LAALTWTSL	9	Unmodified	_LAALTWTSL_					0	0	0		DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.F4486Lfs*7|2|0.23|ENSG00000039139|chr5:13701317-13701317|A/-|frameshift_variant;ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.L1467Wfs*3|1|0.23|ENSG00000039139|chr5:13864593-13864593|A/-|frameshift_variant;DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant;DNAH5|p.G1976Efs*78|3|0.44|ENSG00000039139|chr5:13830731-13830731|C/-|frameshift_variant;DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant;DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2757873535156	2	488.279118	974.543683	-0.37936	-0.00018524	-4.4506	-0.0021731	-4.83	-0.0023584	488.2768688956263	34.102	0.19397	34.102	33.987	34.181	0					9	5	2	0	0	0	0.25109	1	12664	12664		55.504	2.5675	1	155540			23076	817;818	14853	14912	23405	23405					0.055392420743373805
LAALVQGTQ	9	Unmodified	_LAALVQGTQ_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7606506347656	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.873	1	13.873	13.373	14.373	0								0	0	0	0.1836	1	3476	3476		53.351	0	1				23077	8048	14854	14913	23406	23406					0.053857848974644185
LAANGADLSI	10	Unmodified	_LAANGADLSI_					0	0	0		MIB1-MYO5B|1|fusion;ENSG00000101752|ENST00000261537|MIB1	MIB1-MYO5B|1|fusion	MIB1-MYO5B|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7549743652344	2	472.756007	943.497461	-1.4874	-0.00070317	0.75474	0.00035681	-0.73264	-0.00034636	472.7560815357082	38.537	0.17134	38.537	38.433	38.605	0					13	9	2	0	0	0	0.31613	1	12996	12996		65.465	12.529	1	60124			23078	11366	14855	14914	23407	23407					0.023451771722420744
LAAPAPPAAPA	11	Unmodified	_LAAPAPPAAPA_					0	0	0			REV__NYAP1|p.V572Cfs*2|2|0.43|ENSG00000166924|chr7:100489429-100489429|G/-|frameshift_variant	REV__NYAP1|p.V572Cfs*2|2|0.43|ENSG00000166924|chr7:100489429-100489429|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7715148925781	2	473.77146	945.528367	-0.12573	-5.9567E-05	-0.27122	-0.00012849	-0.39695	-0.00018806	473.7712562916891	31.815	0.15804	31.815	31.718	31.876	0					7	5	2	0	0	0	0.55011	1	11010	11010		40.573	0	1	42510	+		23079	16153	14856	14915	23408	23408					0.053423752771209365
LAAPGAFQAQ	10	Unmodified	_LAAPGAFQAQ_					0	0	0		ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2585754394531	2	487.258717	972.50288	0.63174	0.00030782	-0.93922	-0.00045765	-0.30748	-0.00014982	487.25826122242484	34.536	0.36331	34.536	34.336	34.699	0					21	9	3	0	0	0	0.44469	1	13308	13308		51.335	1.8939	1	1112300			23080	10184	14857	14916	23409	23409					0.015529007547115725
LAAPGAFQAQ	10	Unmodified	_LAAPGAFQAQ_					0	0	0		ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2584228515625	2	487.258717	972.50288	2.5534	0.0012442	-2.5053	-0.0012207	0.048104	2.3439E-05	487.25734384569245	34.472	0.40804	34.472	34.212	34.62	0					23	8	4	0	0	0	0.44469	1	13223	13223		51.335	1.8939	1	1162700			23081	10184	14857	14916	23410	23410					0.015529007547115725
LAARAMRNNF	10	Unmodified	_LAARAMRNNF_					0	0	0		ENSG00000143797|ENST00000305997|MBOAT2	ENSG00000143797|ENST00000305997|MBOAT2	ENSG00000143797|ENST00000305997|MBOAT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.3059692382812	2	582.308749	1162.60295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.725	1	35.725	35.225	36.225	0								0	0	0	0.41137	1	13418	13418		21.96	0	1				23082	4581	14858	14917	23411	23411					0.028148148168611442
LAARDLVQ	8	Unmodified	_LAARDLVQ_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2613525390625	2	443.261259	884.507966	-0.24771	-0.0001098	0.36874	0.00016345	0.12103	5.3647E-05	443.26131426810383	27.626	0.20732	27.626	27.523	27.73	0					6	4	2	0	0	0	0.61938	1	10040	10040		45.952	0	1	119400	+		23083	16345	14859	14918	23412	23412					0.061092046173257586
LAARREGH	8	Unmodified	_LAARREGH_					0	0	0			REV__ENST00000264198.4_1_1:20829797-20834584:-|nuORF	REV__ENST00000264198.4_1_1:20829797-20834584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.25537109375	2	455.2543	908.494047	-0.13501	-6.1464E-05	3.1659	0.0014413	3.0309	0.0013798	455.2554435000047	23.221	0.26724	23.221	23.012	23.279	0					8	5	2	0	0	0	0.58597	1	7980	7980		51.335	7.2187	1	360040	+		23084	18058	14860	14919	23413	23413					0.03613971908896474
LAASLARLGL	10	Unmodified	_LAASLARLGL_					0	0	0			REV__COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant	REV__COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.878173828125	3	328.878198	983.612765	1.6798	0.00055246	-1.5474	-0.00050891	0.13243	4.3554E-05	328.8776035938879	27.602	0.27046	27.602	27.493	27.763	0					10	5	3	0	0	0	0.72821	1	9910	9910		22.58	10.373	1	522440	+		23085	12546	14861	14920	23414	23414					0.12030326093884014
LAASTLLQQ	9	Unmodified	_LAASTLLQQ_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.77374267578125	2	472.7742	943.533846	-0.027178	-1.2849E-05	-0.28653	-0.00013547	-0.31371	-0.00014831	472.7740237061293	28.309	0.16945	28.309	28.248	28.417	0					8	5	2	0	0	0	0.13519	1	8823	8823		71.296	10.324	1	103350			23086	6742	14862	14921	23415	23415					0.059820540689429436
LAATWLLD	8	Unmodified	_LAATWLLD_					0	0	0		ENST00000301463.8_1_12:53469542-53469590:-|nuORF	ENST00000301463.8_1_12:53469542-53469590:-|nuORF	ENST00000301463.8_1_12:53469542-53469590:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.25836181640625	2	451.752736	901.490919	-0.087157	-3.9374E-05	1.8449	0.00083346	1.7578	0.00079408	451.75211175720636	26.392	0.62254	26.392	26.081	26.704	0					31	14	3	0	0	0	0.68754	1	8438	8438		35.201	6.9464	1	156920			23087	8492	14863	14922	23416	23416					0.03623284011530359
LACFWSPI	8	Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))FWSPI_	LAC(1)FWSPI		LAC(66)FWSPI		0	1	0		ENST00000454360.1_1_22:17054334-17055434:+|nuORF	ENST00000454360.1_1_22:17054334-17055434:+|nuORF	ENST00000454360.1_1_22:17054334-17055434:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.24603271484375	2	497.246763	992.478974	0.70923	0.00035266	-1.718	-0.00085425	-1.0087	-0.00050159	497.24600600560524	32.935	0.16793	32.935	32.826	32.994	0					10	4	3	0	0	0	0.4434	1	12136	12136		65.897	9.4637	1	211110			23088	9675	14864	14923	23417	23417	399				-0.01756656003306034
LACGVAKVL	9	Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))GVAKVL_	LAC(1)GVAKVL		LAC(110)GVAKVL		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7754821777344	2	465.775688	929.536823	-0.43869	-0.00020433	-0.30581	-0.00014244	-0.7445	-0.00034677	465.77563872875373	33.199	0.21274	33.199	33.125	33.338	0					20	9	3	0	0	0	0.032656	1	10767	10767		106.42	29.569	1	190400			23089	8070	14865	14924	23418	23418	353				0.06923605922099796
LACGVAKVL	9	Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))GVAKVL_	LAC(1)GVAKVL		LAC(110)GVAKVL		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7754211425781	2	465.775688	929.536823	-0.67484	-0.00031432	-0.088958	-4.1434E-05	-0.7638	-0.00035576	465.77572856436035	33.451	0.33221	33.451	33.327	33.659	0					22	8	4	0	0	0	0.028654	1	12358	12358		110.34	24.978	1	1331800			23090	8070	14865	14924	23419	23419	353				0.06923605922099796
LACGVAKVL	9	Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))GVAKVL_	LAC(1)GVAKVL		LAC(97)GVAKVL		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7742919921875	2	465.775688	929.536823	-0.87709	-0.00040853	-0.16764	-7.8083E-05	-1.0447	-0.00048661	465.775456174256	33.259	0.22861	33.259	33.189	33.418	0					19	9	3	0	0	0	0.043797	1	11133	11133		97.473	31.67	1	284010			23091	8070	14865	14924	23420	23420	353				0.06923605922099796
LACGVAKVL	9	Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))GVAKVL_	LAC(1)GVAKVL		LAC(120)GVAKVL		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7751159667969	2	465.775688	929.536823	0.6702	0.00031216	-2.0108	-0.00093659	-1.3406	-0.00062442	465.7747249770647	33.439	0.32151	33.439	33.296	33.618	0					21	7	4	0	0	0	0.021468	1	12809	12809		119.56	30.914	1	1386700			23092	8070	14865	14924	23421	23421	353				0.06923605922099796
LACGVAKVL	9	Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))GVAKVL_	LAC(1)GVAKVL		LAC(63)GVAKVL		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7760314941406	2	465.775688	929.536823	-1.1539	-0.00053744	0.57371	0.00026722	-0.58015	-0.00027022	465.7761372489565	33.472	0.23184	33.472	33.373	33.605	0					7	5	2	0	0	0	0.18605	1	12806	12806		63.306	17.354	1	107690			23093	8070	14865	14924	23422	23422	353				0.06923605922099796
LACGVAKVL	9	Unmodified	_LACGVAKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2648620605469	2	437.264956	872.515359	0.62701	0.00027417	-1.3543	-0.00059218	-0.72727	-0.00031801	437.264292146899	36.874	0.36327	36.874	36.751	37.115	0					14	10	2	0	0	0	0.077948	1	13933	13933		85.359	37.444	1	113930			23094	8070	14865	14925	23423	23423					0.07400220893384812
LACGVAKVL	9	Unmodified	_LACGVAKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.263916015625	2	437.264956	872.515359	-0.92605	-0.00040493	0.66968	0.00029283	-0.25638	-0.0001121	437.26480406157833	36.671	0.16165	36.671	36.553	36.715	0					11	8	2	0	0	0	0.25109	1	12404	12404		55.504	10.973	1	37345			23095	8070	14865	14925	23424	23424					0.07400220893384812
LACGVAKVL	9	Unmodified	_LACGVAKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.26458740234375	2	437.264956	872.515359	0.7251	0.00031706	-1.5101	-0.00066031	-0.78499	-0.00034325	437.2642988043892	36.834	0.3538	36.834	36.741	37.095	0					26	11	3	0	0	0	0.032656	1	14365	14365		106.42	17.772	1	234770			23096	8070	14865	14925	23425	23425					0.07400220893384812
LACLALFTH	9	Unmodified	_LACLALFTH_					0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7655029296875	2	494.767863	987.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.089	1	40.089	39.589	40.589	0								0	0	0	0.25856	1	15279	15279		42.474	8.9589	1		+		23097	17826	14866	14926	23426	23426					0.026913194050735
LACLKRPL	8	Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))LKRPL_	LAC(1)LKRPL		LAC(83)LKRPL		0	1	0			REV__ENST00000361887.5_2_X:152157706-152158048:-|nuORF	REV__ENST00000361887.5_2_X:152157706-152158048:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7999572753906	2	485.796955	969.579357	2.5028	0.0012159	3.2154	0.001562	5.7182	0.0027779	485.7987187813661	38.195	0.56539	38.195	37.869	38.435	0					24	12	3	0	0	0	0.29779	1	14988	14988		83.287	8.7706	1	508260	+		23098	18575	14867	14927	23427	23427	658				0.09335001050339997
LADAIILLTE	10	Unmodified	_LADAIILLTE_					0	0	0		ENST00000565010.1_1_16:602435-603513:+|nuORF;ENSG00000103326|ENST00000219611|CAPN15	ENST00000565010.1_1_16:602435-603513:+|nuORF	ENST00000565010.1_1_16:602435-603513:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.8806457519531	3	357.881385	1070.62233	-0.060922	-2.1803E-05	-2.0038	-0.00071712	-2.0647	-0.00073893	357.88074717179654	17.589	0.21938	17.589	17.531	17.751	0					6	4	2	0	0	0	0.68774	1	5116	5116		23.523	23.523	1	224510			23099	10743	14868	14928	23428	23428					0.08984049588752896
LADAPPGALE	10	Unmodified	_LADAPPGALE_					0	0	0			REV__ENSG00000139438|ENST00000538780|FAM222A	REV__ENSG00000139438|ENST00000538780|FAM222A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2508850097656	2	477.250557	952.486562	0.6405	0.00030568	-1.2349	-0.00058938	-0.59445	-0.0002837	477.25028780877426	41.702	0.11189	41.702	41.607	41.719	0					6	4	2	0	0	0	0.46215	1	16395	16395		49.442	5.3247	1	66812	+		23100	15029	14869	14929	23429	23429					0.008417747979365231
LADAVVKIV	9	Unmodified	_LADAVVKIV_					0	0	0		ENST00000462646.5_1_1:19923518-19941047:+|nuORF	ENST00000462646.5_1_1:19923518-19941047:+|nuORF	ENST00000462646.5_1_1:19923518-19941047:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2959899902344	2	464.29731	926.580068	-0.694	-0.00032222	0.2952	0.00013706	-0.3988	-0.00018516	464.29739839563103	42.826	0.27538	42.826	42.752	43.027	0					30	14	3	0	0	0	0.13267	1	16190	16190		71.877	11.759	1	1087100			23101	9743	14870	14930	23430	23430					0.11384118971045609
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2588195800781	2	488.258914	974.503274	-0.016461	-8.0372E-06	-0.21196	-0.00010349	-0.22842	-0.00011153	488.25873969892007	30.348	0.25943	30.348	30.217	30.476	0					14	9	2	0	0	0	0.14578	1	9655	9655		68.846	20.887	1	225090			23102	4225	14871	14931	23431	23431					0.01500275683918062
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2590026855469	2	488.258914	974.503274	-0.37917	-0.00018513	0.10475	5.1145E-05	-0.27442	-0.00013399	488.2589505574778	30.649	0.35534	30.649	30.432	30.788	0					14	8	2	0	0	0	0.082776	1	11058	11058		83.647	11.77	1	929400			23103	4225	14871	14931	23432	23432					0.01500275683918062
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.258544921875	2	488.258914	974.503274	-1.2484	-0.00060953	1.1045	0.00053928	-0.14388	-7.0251E-05	488.25935947182467	30.417	0.31688	30.417	30.278	30.595	0					24	10	3	0	0	0	0.019258	1	9981	9981		123.21	16.525	1	963810			23104	4225	14871	14931	23433	23433					0.01500275683918062
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2587585449219	2	488.258914	974.503274	0.6201	0.00030277	-0.62551	-0.00030541	-0.0054104	-2.6417E-06	488.25850366730214	30.641	0.36949	30.641	30.496	30.866	0					24	8	4	0	0	0	0.037712	1	11461	11461		101.46	10.859	1	4875300			23105	4225	14871	14931	23434	23434					0.01500275683918062
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.25885009765625	2	488.258914	974.503274	-0.19696	-9.6167E-05	0.099577	4.8619E-05	-0.097382	-4.7547E-05	488.25897502111525	30.434	0.36431	30.434	30.335	30.7	0					14	9	3	0	0	0	0.026848	1	10354	10354		112.11	18.964	1	495220			23106	4225	14871	14931	23435	23435					0.01500275683918062
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.258544921875	2	488.258914	974.503274	-2.9066	-0.0014192	2.961	0.0014457	0.054329	2.6527E-05	488.26016596238077	30.428	0.34255	30.428	30.278	30.621	0					19	8	3	0	0	0	0.026848	1	10347	10347		112.11	18.964	1	811480			23107	4225	14871	14931	23436	23436					0.01500275683918062
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.25872802734375	2	488.258914	974.503274	0.79434	0.00038784	-0.68836	-0.0003361	0.10598	5.1743E-05	488.2586861173094	30.62	0.35747	30.62	30.474	30.831	0					20	7	4	0	0	0	0.012936	1	11342	11342		134.77	19.272	1	4066300			23108	4225	14871	14931	23437	23437					0.01500275683918062
LADENKAISN	10	Unmodified	_LADENKAISN_					0	0	0			REV__CHRNB3|p.E27K|1|0.3|ENSG00000147432|chr8:42708743-42708743|G/A|missense_variant	REV__CHRNB3|p.E27K|1|0.3|ENSG00000147432|chr8:42708743-42708743|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2767333984375	2	537.774928	1073.5353	-0.31525	-0.00016953	2.0832	0.0011203	1.768	0.00095078	537.7766791636693	36.976	0.17603	36.976	36.888	37.064	0					14	9	2	0	0	0	0.39827	1	12520	12520		56.434	3.3448	1	70023	+		23109	12495	14872	14932	23438	23438					0.0014764336706321046
LADFPGLPWK	10	Unmodified	_LADFPGLPWK_					0	0	0		ENST00000409161.5_1_11:70508092-70508251:-|nuORF	ENST00000409161.5_1_11:70508092-70508251:-|nuORF	ENST00000409161.5_1_11:70508092-70508251:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.3156127929688	2	572.313492	1142.61243	2.0202	0.0011562	1.801	0.0010307	3.8212	0.0021869	572.3145704621139	12.989	0.27451	12.989	12.929	13.203	0					8	6	2	0	0	0	0.65895	1	3066	3066		15.642	10.422	1	163320			23110	9292	14873	14933	23439	23439					0.04682906374023332
LADHTVHVL	9	Unmodified	_LADHTVHVL_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;ENST00000568574.1_1_15:30926543-30927454:+|nuORF;ENST00000566362.1_1_15:30922935-30927517:+|nuORF;ENST00000564902.5_1_15:30917016-30927830:+|nuORF;nc|ENSG00000285077|Q3KRB8|ARHGAP11B;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.779541015625	2	502.779816	1003.54508	0.13477	6.7762E-05	0.00037378	1.8793E-07	0.13515	6.7949E-05	502.779647525959	27.497	0.21547	27.497	27.414	27.629	0					8	5	2	0	0	0	0.13519	1	9013	9013		71.296	7.9894	1	115330			23111	199	14874	14934	23440	23440					0.04344876163088429
LADKKAPG	8	Unmodified	_LADKKAPG_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2373046875	2	400.237253	798.459953	-0.36837	-0.00014743	0.37171	0.00014877	0.0033461	1.3392E-06	400.2373625191503	20.33	0.24539	20.33	20.142	20.387	0					11	5	3	0	0	0	0.5676	1	6303	6303		53.351	0	1	361360			23112	3290	14875	14935	23441	23441					0.052661306972822786
LADLMPLL	8	Unmodified	_LADLMPLL_					0	0	0			REV__ENST00000570484.1_1_17:7147506-7148078:-|nuORF	REV__ENST00000570484.1_1_17:7147506-7148078:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.26104736328125	2	443.259339	884.504126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.638	1	27.638	27.138	28.138	0								0	0	0	1.7419	1	10036	10036		65.897	5.6035	1		+		23113	16633	14876	14936	23442	23442					0.05725398799256709
LADPENRQL	9	Unmodified	_LADPENRQL_					0	0	0		ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.27783203125	2	528.277638	1054.54072	0.10797	5.7038E-05	0.27679	0.00014622	0.38476	0.00020326	528.2777985195318	27.205	0.54441	27.205	26.956	27.501	0					28	13	3	0	0	0	0.15163	1	9481	9481		67.494	9.2637	1	1618800			23114	6348	14877	14937	23443	23443					0.015633669495173308
LADPENRQL	9	Unmodified	_LADPENRQL_					0	0	0		ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.2781372070312	2	528.277638	1054.54072	0.20167	0.00010654	1.122	0.00059272	1.3237	0.00069926	528.2780857215624	26.992	0.377	26.992	26.794	27.171	0					31	13	4	0	0	0	0.35021	1	8505	8505		45.972	3.108	1	539360			23115	6348	14877	14937	23444	23444					0.015633669495173308
LADPENRQL	9	Unmodified	_LADPENRQL_					0	0	0		ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2780151367188	2	528.277638	1054.54072	1.7479	0.00092337	-0.84256	-0.00044511	0.90532	0.00047826	528.2771078746497	27.212	0.56182	27.212	26.961	27.523	0					33	11	5	0	0	0	0.037924	1	9842	9842		101.25	23.935	1	2973700			23116	6348	14877	14937	23445	23445					0.015633669495173308
LADPENRQL	9	Unmodified	_LADPENRQL_					0	0	0		ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2777709960938	2	528.277638	1054.54072	1.629	0.00086057	-1.4296	-0.00075521	0.19944	0.00010536	528.2769344560924	27.145	0.61909	27.145	26.788	27.407	0					25	12	3	0	0	0	0.15163	1	9696	9696		67.494	9.2637	1	646370			23117	6348	14877	14937	23446	23446					0.015633669495173308
LADPSAKAV	9	Unmodified	_LADPSAKAV_					0	0	0		TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant;ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.M193*|1|0.31|ENSG00000107854|chr10:91819496-91819496|A/-|frameshift_variant;TNKS2|p.K349Nfs*8|1|0.47|ENSG00000107854|chr10:91828344-91828344|A/-|frameshift_variant;TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant;nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.2477111816406	2	436.247818	870.481082	-0.65225	-0.00028454	0.038266	1.6693E-05	-0.61398	-0.00026785	436.2478064601129	23.599	0.51205	23.599	23.387	23.899	0					27	12	3	0	0	0	0.063171	1	7183	7183		90.601	13.827	1	406740			23118	2498	14878	14938	23447	23447					0.04066096006135922
LADPSAKAV	9	Unmodified	_LADPSAKAV_					0	0	0		TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant;ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.M193*|1|0.31|ENSG00000107854|chr10:91819496-91819496|A/-|frameshift_variant;TNKS2|p.K349Nfs*8|1|0.47|ENSG00000107854|chr10:91828344-91828344|A/-|frameshift_variant;TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant;nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2478332519531	2	436.247818	870.481082	-0.5447	-0.00023762	0.78415	0.00034208	0.23945	0.00010446	436.2481025324874	23.739	0.76085	23.739	23.284	24.045	0					25	15	3	0	0	0	0.16806	1	8106	8106		65.465	19.513	1	228560			23119	2498	14878	14938	23448	23448					0.04066096006135922
LADPSAKAV	9	Unmodified	_LADPSAKAV_					0	0	0		TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant;ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.M193*|1|0.31|ENSG00000107854|chr10:91819496-91819496|A/-|frameshift_variant;TNKS2|p.K349Nfs*8|1|0.47|ENSG00000107854|chr10:91828344-91828344|A/-|frameshift_variant;TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant;nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2474060058594	2	436.247818	870.481082	0.75312	0.00032855	-0.89401	-0.00039001	-0.14089	-6.1462E-05	436.2472856779322	23.755	0.76192	23.755	23.467	24.229	0					45	15	4	0	0	0	0.056004	1	8050	8050		93.143	5.3889	1	2814700			23120	2498	14878	14938	23449	23449					0.04066096006135922
LADSFSRLF	9	Unmodified	_LADSFSRLF_					0	0	0			REV__ENSG00000179044|ENST00000314586|EXOC3L1	REV__ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2780151367188	2	528.279649	1054.54475	-1.1814	-0.0006241	-1.497	-0.00079085	-2.6784	-0.001415	528.2788636142459	27.021	0.40311	27.021	26.804	27.208	0					22	10	3	0	0	0	0.07136	1	8784	8784		71.296	12.514	1	467560	+		23121	16761	14879	14939	23450	23450					0.0196545644323578
LADVEKKE	8	Unmodified	_LADVEKKE_					0	0	0		EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant;ENSG00000072840|ENST00000264956|EVC	EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.25799560546875	2	466.258382	930.502212	-2.2574	-0.0010525	1.1581	0.00053999	-1.0993	-0.00051256	466.2591721175413	25.223	0.22763	25.223	25.114	25.342	0					12	5	3	0	0	0	0.5676	1	7989	7989		53.351	5.6941	1	117970			23122	1504	14880	14940	23451	23451					0.03418061315005616
LAEAFARGI	9	Unmodified	_LAEAFARGI_					0	0	0			REV__HPGD|p.W37Lfs*4|1|0.11|ENSG00000164120|chr4:174522051-174522052|-/A|frameshift_variant	REV__HPGD|p.W37Lfs*4|1|0.11|ENSG00000164120|chr4:174522051-174522052|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.268798828125	2	474.269084	946.523616	-0.26167	-0.0001241	-0.33232	-0.00015761	-0.59399	-0.00028171	474.2687874748949	20.915	0.12607	20.915	20.825	20.951	0					7	4	2	0	0	0	0.45358	1	5686	5686		37.159	1.5408	1	132560	+		23123	15966	14881	14941	23452	23452					0.048214911343848144
LAEAGGRAL	9	Unmodified	_LAEAGGRAL_					0	0	0		ENSG00000197912|ENST00000645818|SPG7;nc|ENSG00000197912|Q9UQ90-2|SPG7	ENSG00000197912|ENST00000645818|SPG7	ENSG00000197912|ENST00000645818|SPG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2453918457031	2	429.245609	856.476666	-0.24103	-0.00010346	0.24204	0.0001039	0.0010117	4.3429E-07	429.2456106333377	24.065	0.15143	24.065	23.978	24.129	0					10	4	3	0	0	0	0.055856	1	7036	7036		93.195	24.409	1	255840			23124	7507	14882	14942	23453	23453					0.04268631583215665
LAEAGGRAL	9	Unmodified	_LAEAGGRAL_					0	0	0		ENSG00000197912|ENST00000645818|SPG7;nc|ENSG00000197912|Q9UQ90-2|SPG7	ENSG00000197912|ENST00000645818|SPG7	ENSG00000197912|ENST00000645818|SPG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2453918457031	2	429.245609	856.476666	-0.58833	-0.00025254	-0.10296	-4.4195E-05	-0.69129	-0.00029673	429.2456707161207	24.352	0.23668	24.352	24.253	24.49	0					11	5	3	0	0	0	0.07136	1	8196	8196		87.696	13.441	1	1361500			23125	7507	14882	14942	23454	23454					0.04268631583215665
LAEAHSNPL	9	Unmodified	_LAEAHSNPL_					0	0	0		ENST00000378339.6_1_5:137781719-137782058:+|nuORF	ENST00000378339.6_1_5:137781719-137782058:+|nuORF	ENST00000378339.6_1_5:137781719-137782058:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2480163574219	2	476.248349	950.482145	-0.4508	-0.00021469	0.0012985	6.184E-07	-0.4495	-0.00021407	476.24835331934327	26.033	0.15723	26.033	25.955	26.113	0					8	5	2	0	0	0	0.44593	1	8134	8134		37.812	0.65241	1	90932			23126	9067	14883	14943	23455	23455					0.004923103750343216
LAEEKAAVL	9	Unmodified	_LAEEKAAVL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2763366699219	2	472.276575	942.538597	0.21082	9.9566E-05	-0.84575	-0.00039943	-0.63492	-0.00029986	472.2762864536873	29.369	0.33809	29.369	29.245	29.584	0					12	8	2	0	0	0	0.16806	1	10475	10475		65.465	3.358	1	240920			23127	2348	14884	14944	23456	23456					0.06502938211713172
LAEEKAAVL	9	Unmodified	_LAEEKAAVL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2768249511719	2	472.276575	942.538597	-0.12318	-5.8175E-05	0.21055	9.9438E-05	0.087371	4.1263E-05	472.2767079309404	29.341	0.19472	29.341	29.251	29.446	0					7	4	2	0	0	0	0.12834	1	10865	10865		72.879	10.772	1	144710			23128	2348	14884	14944	23457	23457					0.06502938211713172
LAEEKAAVL	9	Unmodified	_LAEEKAAVL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2765197753906	2	472.276575	942.538597	-0.5673	-0.00026792	0.35672	0.00016847	-0.21059	-9.9454E-05	472.2766188443542	29.31	0.21763	29.31	29.207	29.424	0					10	4	3	0	0	0	0.056004	1	10714	10714		93.143	13.431	1	279320			23129	2348	14884	14944	23458	23458					0.06502938211713172
LAEELGGPVHA	11	Unmodified	_LAEELGGPVHA_					0	0	0		ENST00000476344.1_1_1:149871204-149872023:+|nuORF;ENSG00000178096|ENST00000369152|BOLA1	ENST00000476344.1_1_1:149871204-149872023:+|nuORF	ENST00000476344.1_1_1:149871204-149872023:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.86090087890625	3	364.860984	1091.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.566	1	24.566	24.066	25.066	0								0	0	0	0.42444	1	7269	7269		31.634	1.3165	1				23130	6700	14885	14945	23459	23459					0.019005376093446102
LAEELGRIR	9	Unmodified	_LAEELGRIR_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.87701416015625	3	352.876857	1055.60874	1.4432	0.00050927	-1.5504	-0.00054711	-0.10723	-3.784E-05	352.8763241823949	14.01	0.20825	14.01	13.848	14.056	0					7	4	2	0	0	0	0.5654	1	3399	3399		25.574	1.0549	1	86085	+		23131	13416	14886	14946	23460	23460					0.08316236600194316
LAEFFPQN	8	Unmodified	_LAEFFPQN_					0	0	0		ENSG00000100726|ENST00000262319|TELO2;TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2363586425781	2	483.239993	964.465432	-1.2808	-0.00061892	-4.0653	-0.0019645	-5.3461	-0.0025834	483.2376934671216	30.05	0.06934	30.05	29.984	30.053	0					4	2	2	0	0	0	0.64096	1	9833	9833		42.474	1.6963	1	63576			23132	2060	14887	14947	23461	23461					-0.0182219051090442
LAEGRVQL	8	Unmodified	_LAEGRVQL_					0	0	0			REV__nc|ENSG00000170324|Q68DX3-3|FRMPD2	REV__nc|ENSG00000170324|Q68DX3-3|FRMPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2611999511719	2	443.261259	884.507966	0.58098	0.00025753	-0.72498	-0.00032136	-0.144	-6.3829E-05	443.26096908976376	27.628	0.26305	27.628	27.542	27.805	0					12	6	3	0	0	0	0.5676	1	9663	9663		53.351	2.016	1	753820	+		23133	16361	14888	14948	23462	23462					0.0610920461731439
LAEGWLLQ	8	Unmodified	_LAEGWLLQ_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2571105957031	2	465.258185	928.501818	0.076963	3.5808E-05	-3.7988	-0.0017674	-3.7218	-0.0017316	465.25631314715145	16.753	0.12108	16.753	16.665	16.786	0					7	4	2	0	0	0	0.59411	1	3871	3871		50.025	2.3672	1	62265	+		23134	16405	14889	14949	23463	23463					0.03470686385821864
LAEHETAL	8	Unmodified	_LAEHETAL_					0	0	0			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2294616699219	2	442.229625	882.444697	0.74154	0.00032793	-1.0569	-0.00046738	-0.31534	-0.00013945	442.22916818888893	31.362	0.26315	31.362	31.258	31.521	0					13	5	3	0	0	0	0.64096	1	11729	11729		42.474	0	1	543530	+		23135	13071	14890	14950	23464	23464					-0.0012278089058099795
LAEKESQI	8	Unmodified	_LAEKESQI_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2503356933594	2	459.250557	916.486562	-0.93656	-0.00043011	0.48696	0.00022363	-0.4496	-0.00020648	459.2507408869076	23.548	0.43351	23.548	23.276	23.709	0					33	15	4	0	0	0	0.7126	1	7072	7072		31.955	0	1	854900	+		23136	14836	14891	14951	23465	23465					0.024977747979505693
LAEKSVLP	8	Unmodified	_LAEKSVLP_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	REV__nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.765625	2	428.760561	855.506569	-0.92302	-0.00039576	3.5469	0.0015208	2.6239	0.001125	428.7612318622367	34.289	0.71658	34.289	33.808	34.525	0					77	30	5	0	0	0	0.41952	1	11419	11419		68.485	8.1907	1	957600	+		23137	13133	14892	14952	23466	23466					0.07303570528563341
LAELGLLEQ	9	Unmodified	_LAELGLLEQ_					0	0	0		ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2818603515625	2	493.281857	984.549162	0.62544	0.00030852	-0.59824	-0.0002951	0.027203	1.3419E-05	493.28148472587355	34.416	0.4324	34.416	34.303	34.735	0					23	11	3	0	0	0	0.05357	1	13253	13253		94.006	3.6366	1	2132000			23138	11019	14893	14953	23467	23467					0.05626920866143337
LAELGLLEQ	9	Unmodified	_LAELGLLEQ_					0	0	0		ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2817077636719	2	493.281857	984.549162	0.0073221	3.6119E-06	-0.3713	-0.00018315	-0.36397	-0.00017954	493.2817097400706	34.219	0.23031	34.219	34.13	34.36	0					15	7	3	0	0	0	0.20551	1	12093	12093		60.972	2.19	1	236920			23139	11019	14893	14953	23468	23468					0.05626920866143337
LAELPLPSPR	10	Unmodified	_LAELPLPSPR_					0	0	0		ENST00000469172.5_1_10:70091245-70091596:+|nuORF	ENST00000469172.5_1_10:70091245-70091596:+|nuORF	ENST00000469172.5_1_10:70091245-70091596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.82373046875	2	546.824224	1091.63389	-0.25861	-0.00014142	1.696	0.00092742	1.4374	0.000786	546.8252826932331	26.187	0.10751	26.187	26.103	26.21	0					5	3	2	0	0	0	0.5155	1	8202	8202		39.253	2.9352	1	38196			23140	9822	14894	14954	23469	23469					0.09174291402746348
LAEQLTENSAL	11	Unmodified	_LAEQLTENSAL_					0	0	0			REV__ENSG00000177694|ENST00000454872|NAALADL2	REV__ENSG00000177694|ENST00000454872|NAALADL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8065795898438	2	594.808968	1187.60338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.976	1	44.976	44.476	45.476	0								0	0	0	0.44488	1	18018	18018		27.047	2.8446	1		+		23141	16707	14895	14955	23470	23470					0.01708468227047888
LAERRRGL	8	Unmodified	_LAERRRGL_					0	0	0		TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.8000793457031	2	485.798875	969.583196	0.64944	0.00031549	1.3248	0.00064357	1.9742	0.00095906	485.7996301088945	38.295	0.7279	38.295	37.985	38.713	0					51	25	3	0	0	0	0.5676	1	14980	14980		53.351	53.351	1	478880			23142	3391	14896	14956	23471	23471					0.09718806868420415
LAESIKPA	8	Unmodified	_LAESIKPA_					0	0	0		IL21R|p.P123Lfs*4|1|0.23|ENSG00000103522|chr16:27442973-27442973|C/-|frameshift_variant;IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant;ENSG00000103522|ENST00000337929|IL21R	IL21R|p.P123Lfs*4|1|0.23|ENSG00000103522|chr16:27442973-27442973|C/-|frameshift_variant	IL21R|p.P123Lfs*4|1|0.23|ENSG00000103522|chr16:27442973-27442973|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.7448425292969	2	414.744911	827.475269	-0.37507	-0.00015556	-0.10346	-4.2911E-05	-0.47853	-0.00019847	414.7451481743093	33.159	0.24668	33.159	33.019	33.266	0					9	5	3	0	0	0	0.30437	1	12564	12564		82.305	10.428	1	208450			23143	2248	14897	14957	23472	23472					0.054629974944646165
LAETARAI	8	Unmodified	_LAETARAI_					0	0	0			REV__TRIM46|p.H455Ifs*32|1|0.26|ENSG00000163462|chr1:155179703-155179703|C/-|frameshift_variant	REV__TRIM46|p.H455Ifs*32|1|0.26|ENSG00000163462|chr1:155179703-155179703|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.74798583984375	2	422.747985	843.481417	-1.1812	-0.00049935	1.7405	0.00073579	0.55928	0.00023643	422.7486929921599	27.157	0.15111	27.157	27.102	27.253	0					7	5	2	0	0	0	0.58597	1	8637	8637		51.335	0	1	53134	+		23144	15882	14898	14958	23473	23473					0.053415157259905754
LAEVGRVL	8	Unmodified	_LAEVGRVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.L636Pfs*8|1|0.12|ENSG00000010165|chr1:171796557-171796558|-/C|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.7659912109375	2	428.766178	855.517802	0.22013	9.4382E-05	-0.93591	-0.00040129	-0.71579	-0.00030691	428.7657373644961	33.833	0.18361	33.833	33.738	33.922	0					15	7	3	0	0	0	0.3049	1	11027	11027		82.241	24.429	1	327700			23145	1031	14899	14959	23474	23474					0.084263926227095
LAEVGRVL	8	Unmodified	_LAEVGRVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.L636Pfs*8|1|0.12|ENSG00000010165|chr1:171796557-171796558|-/C|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.765869140625	2	428.766178	855.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.091	1	34.091	33.591	34.591	0								0	0	0	1.7419	1	12667	12667		76.774	18.963	1				23146	1031	14899	14959	23475	23475					0.084263926227095
LAEVGRVL	8	Unmodified	_LAEVGRVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.L636Pfs*8|1|0.12|ENSG00000010165|chr1:171796557-171796558|-/C|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.7664489746094	2	428.766178	855.517802	3.2973	0.0014138	-2.7706	-0.0011879	0.52675	0.00022585	428.76502410255074	33.921	0.13612	33.921	33.842	33.978	0					9	5	2	0	0	0	0.43813	1	11398	11398		66.429	10.925	1	82752			23147	1031	14899	14959	23476	23476					0.084263926227095
LAEVGRVL	8	Unmodified	_LAEVGRVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.L636Pfs*8|1|0.12|ENSG00000010165|chr1:171796557-171796558|-/C|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.7657775878906	2	428.766178	855.517802	-0.52539	-0.00022527	-0.034358	-1.4732E-05	-0.55975	-0.00024	428.7661727956826	34.113	0.35873	34.113	33.964	34.323	0					17	8	3	0	0	0	0.24806	1	13108	13108		104.75	30.772	1	663570			23148	1031	14899	14959	23477	23477					0.084263926227095
LAEVGRVL	8	Unmodified	_LAEVGRVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.L636Pfs*8|1|0.12|ENSG00000010165|chr1:171796557-171796558|-/C|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.76654052734375	2	428.766178	855.517802	0.17867	7.6607E-05	0.34762	0.00014905	0.52629	0.00022566	428.76629082031775	33.87	0.16434	33.87	33.785	33.949	0					9	4	3	0	0	0	0.24622	1	11923	11923		108.09	31.241	1	194600			23149	1031	14899	14959	23478	23478					0.084263926227095
LAEVGRVL	8	Unmodified	_LAEVGRVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.L636Pfs*8|1|0.12|ENSG00000010165|chr1:171796557-171796558|-/C|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.7659912109375	2	428.766178	855.517802	-0.42708	-0.00018312	-0.04247	-1.821E-05	-0.46955	-0.00020133	428.7661835700859	34.061	0.40227	34.061	33.908	34.31	0					18	8	4	0	0	0	0.25873	1	13001	13001		96.19	30.387	1	2011100			23150	1031	14899	14959	23479	23479					0.084263926227095
LAEWSVPLK	9	Unmodified	_LAEWSVPLK_					0	0	0			REV__ENST00000464994.5_1_2:102608489-102626165:+|nuORF	REV__ENST00000464994.5_1_2:102608489-102626165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.803955078125	2	521.800217	1041.58588	3.3929	0.0017704	3.1519	0.0016447	6.5448	0.0034151	521.8020411376028	20.268	0.31717	20.268	20.06	20.377	0					12	6	3	0	0	0	0.16002	1	6419	6419		66.429	16.893	1	1659800	+		23151	18388	14900	14960	23480	23480					0.0667521748271156
LAFERNRL	8	Unmodified	_LAFERNRL_					0	0	0			REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.1978759765625	3	340.197931	1017.57196	0.51111	0.00017388	-0.70091	-0.00023845	-0.18979	-6.4568E-05	340.19766946174326	24.607	0.40026	24.607	24.34	24.741	0					23	9	3	0	0	0	0.75243	1	8317	8317		37.159	12.927	1	325370	+		23152	16326	14901	14961	23481	23481					0.06387984774266897
LAFGGKMVM	9	Unmodified	_LAFGGKMVM_					0	0	0		ENST00000361763.8_1_11:118175656-118183365:+|nuORF	ENST00000361763.8_1_11:118175656-118183365:+|nuORF	ENST00000361763.8_1_11:118175656-118183365:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2507019042969	2	477.250991	952.48743	0.81596	0.00038942	-1.3983	-0.00066733	-0.58232	-0.00027791	477.25017035572637	41.638	0.17068	41.638	41.557	41.728	0					6	4	2	0	0	0	0.32741	1	16589	16589		47.916	8.6628	1	73497			23153	8879	14902	14962	23482	23482					0.00928574641659452
LAFGGKMVM	9	Unmodified	_LAFGGKMVM_					0	0	0		ENST00000361763.8_1_11:118175656-118183365:+|nuORF	ENST00000361763.8_1_11:118175656-118183365:+|nuORF	ENST00000361763.8_1_11:118175656-118183365:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2503356933594	2	477.250991	952.48743	2.237	0.0010676	-3.7983	-0.0018127	-1.5613	-0.00074514	477.24952784679897	41.673	0.16832	41.673	41.546	41.715	0					8	4	3	0	0	0	0.30268	1	16600	16600		50.025	6.3985	1	85657			23154	8879	14902	14962	23483	23483					0.00928574641659452
LAFLLTPGAGT	11	Unmodified	_LAFLLTPGAGT_					0	0	0		nc|ENSG00000100450|P20718-3|GZMH;nc|ENSG00000100450|P20718-2|GZMH;ENSG00000100450|ENST00000216338|GZMH	nc|ENSG00000100450|P20718-3|GZMH	nc|ENSG00000100450|P20718-3|GZMH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.20660400390625	3	354.206092	1059.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.392	1	44.392	43.892	44.892	0								0	0	0	0.45674	1	17785	17785		13.508	0.69623	1				23155	2032	14903	14963	23484	23484					0.0690320013713972
LAFLVGSHIS	10	Unmodified	_LAFLVGSHIS_					0	0	0		ENSG00000086159|ENST00000315520|AQP6	ENSG00000086159|ENST00000315520|AQP6	ENSG00000086159|ENST00000315520|AQP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5343017578125	3	348.53432	1042.58113	0.51326	0.00017889	-0.28077	-9.7858E-05	0.2325	8.1033E-05	348.5341386433202	30.084	0.24255	30.084	29.978	30.221	0					8	5	2	0	0	0	0.72334	1	11218	11218		17.468	17.468	1	248280			23156	1744	14904	14964	23485	23485					0.06154333339964069
LAFNTSQLR	9	Unmodified	_LAFNTSQLR_					0	0	0			REV__ENST00000379707.7_1_9:33255219-33262163:-|nuORF	REV__ENST00000379707.7_1_9:33255219-33262163:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2918701171875	2	525.290548	1048.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.23	1	15.23	14.73	15.73	0								0	0	0	0.37233	1	3370	3370		19.104	0.77911	1		+		23157	13849	14905	14965	23486	23486					0.044202611917853574
LAFPCCSSSL	10	Unmodified	_LAFPCCSSSL_					0	0	0			REV__ENST00000380243.8_2_14:99979836-99979959:-|nuORF	REV__ENST00000380243.8_2_14:99979836-99979959:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2334594726562	2	514.232996	1026.45144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.638	1	45.638	45.138	46.138	0								0	0	0	0.29716	1	18283	18283		51.335	0	1		+		23158	18768	14906	14966	23487	23487					-0.0607292732586302
LAFPLLAAPA	10	Unmodified	_LAFPLLAAPA_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.29791259765625	2	492.299853	982.585153	-2.6453	-0.0013023	-1.9495	-0.00095973	-4.5948	-0.002262	492.2990931889273	37.559	0.38054	37.559	37.336	37.717	0					40	18	3	0	0	0	0.661	1	13402	13402		26.796	1.3459	1	112460			23159	4324	14907	14967	23488	23488					0.09316422833649085
LAFPPESL	8	Unmodified	_LAFPPESL_					0	0	0			REV__ENST00000421980.5_1_7:99716680-99716935:-|nuORF	REV__ENST00000421980.5_1_7:99716680-99716935:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.23797607421875	2	437.239461	872.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.84	1	22.84	22.34	23.34	0								0	0	0	1.7419	1	6781	6781		39.021	0	1		+		23160	19085	14908	14968	23489	23489					0.023035951202018623
LAFSGLAGPP	10	Unmodified	_LAFSGLAGPP_					0	0	0			REV__ENSG00000104967|ENST00000263257|NOVA2	REV__ENSG00000104967|ENST00000263257|NOVA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2559814453125	2	465.258185	928.501818	-2.3145	-0.0010769	-2.2316	-0.0010382	-4.5461	-0.0021151	465.2571660674341	16.803	0.084641	16.803	16.762	16.846	0					4	2	2	0	0	0	0.61887	1	4065	4065		31.955	2.8053	1	99702	+		23161	13749	14909	14969	23490	23490					0.03470686385810495
LAGAHSSL	8	Unmodified	_LAGAHSSL_					0	0	0		ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.2058410644531	2	378.205953	754.397353	0.22351	8.4533E-05	-0.28306	-0.00010705	-0.059549	-2.2522E-05	378.20582420505815	21.255	0.31101	21.255	21.163	21.474	0					13	7	3	0	0	0	0.57802	1	6739	6739		52.299	2.2746	1	647830			23162	2338	14910	14970	23491	23491					0.010329846291028844
LAGAHSSL	8	Unmodified	_LAGAHSSL_					0	0	0		ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	378.2057800292969	2	378.205953	754.397353	-2.1336	-0.00080695	1.8556	0.00070179	-0.27804	-0.00010515	378.206568470787	21.018	0.098063	21.018	20.966	21.064	0					4	2	2	0	0	0	0.6282	1	6027	6027		44.531	0	1	122770			23163	2338	14910	14970	23492	23492					0.010329846291028844
LAGDAAASLL	10	Unmodified	_LAGDAAASLL_					0	0	0		ENST00000252675.6_1_19:5866654-5867368:-|nuORF	ENST00000252675.6_1_19:5866654-5867368:-|nuORF	ENST00000252675.6_1_19:5866654-5867368:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2604064941406	2	451.2531	900.491647	0.65755	0.00029672	-3.6403	-0.0016427	-2.9827	-0.001346	451.25281152005215	26.73	1.1378	26.73	26.042	27.18	0					69	27	4	0	0	0	0.58896	1	9122	9122		35.618	2.8059	1	2042500			23164	8247	14911	14971	23493	23493					0.03742078660570769
LAGDCGADSLE	11	Unmodified	_LAGDCGADSLE_					0	0	0			REV__REPS2|p.D330G|1|0.59|ENSG00000169891|chrX:17054825-17054825|A/G|missense_variant	REV__REPS2|p.D330G|1|0.59|ENSG00000169891|chrX:17054825-17054825|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7228393554688	2	525.724046	1049.43354	-1.23	-0.00064666	-1.4982	-0.00078765	-2.7283	-0.0014343	525.723216303047	29.376	0.1301	29.376	29.285	29.415	0					10	3	4	0	0	0	0.47622	1	9879	9879		45.972	5.1941	1	115010	+		23165	21455	14912	14972	23494	23494					-0.08919971046998398
LAGGGVARSR	10	Unmodified	_LAGGGVARSR_					0	0	0			REV__ENST00000526995.5_1_11:36531604-36531790:-|nuORF	REV__ENST00000526995.5_1_11:36531604-36531790:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2762451171875	2	472.275232	942.535912	-0.54896	-0.00025926	3.3769	0.0015948	2.828	0.0013356	472.27664828327914	29.15	0.11147	29.15	29.112	29.223	0					5	3	2	0	0	0	0.39566	1	9775	9775		56.721	3.3696	1	50198	+		23166	20005	14913	14973	23495	23495					0.062345275974166725
LAGGPSWSPLA	11	Unmodified	_LAGGPSWSPLA_					0	0	0			REV__ENST00000563517.5_1_15:43663421-43663523:+|nuORF	REV__ENST00000563517.5_1_15:43663421-43663523:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.27783203125	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.045	1	27.045	26.545	27.545	0								0	0	0	0.40864	1	8796	8796		25.574	10.709	1		+		23167	20318	14914	14974	23496	23496					0.0196545644323578
LAGGVAAATLL	11	Unmodified	_LAGGVAAATLL_					0	0	0			REV__ENSG00000104870|ENST00000221466|FCGRT	REV__ENSG00000104870|ENST00000221466|FCGRT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7922058105469	2	478.792392	955.570232	0.6573	0.00031471	-1.3398	-0.00064147	-0.68247	-0.00032676	478.7917988783091	42.836	0.1741	42.836	42.736	42.91	0					14	8	2	0	0	0	0.69733	1	16790	16790		27.882	2.3082	1	188330	+		23168	13739	14915	14975	23497	23497					0.09066930965661868
LAGHGHRL	8	Unmodified	_LAGHGHRL_					0	0	0		ENST00000429681.1_1_3:49017674-49021180:-|nuORF	ENST00000429681.1_1_3:49017674-49021180:-|nuORF	ENST00000429681.1_1_3:49017674-49021180:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7455139160156	2	430.746111	859.477669	-0.45779	-0.00019719	-1.2768	-0.00054996	-1.7346	-0.00074716	430.7455486100668	29.068	0.31562	29.068	28.959	29.274	0					16	6	4	0	0	0	0.55361	1	10591	10591		54.765	3.4292	1	1092000			23169	9475	14916	14976	23498	23498					0.042308907428036946
LAGLAVHQI	9	Unmodified	_LAGLAVHQI_					0	0	0		ENST00000425327.6_2_3:118619838-118620162:-|nuORF	ENST00000425327.6_2_3:118619838-118620162:-|nuORF	ENST00000425327.6_2_3:118619838-118620162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.27960205078125	2	461.279452	920.544351	0.72253	0.00033329	0.51512	0.00023761	1.2376	0.0005709	461.2799178387636	32.28	0.56242	32.28	32.126	32.688	0					23	13	2	0	0	0	0.41354	1	12264	12264		40.573	5.3719	1	396840			23170	9431	14917	14977	23499	23499					0.08090081514046688
LAGLAVHQI	9	Unmodified	_LAGLAVHQI_					0	0	0		ENST00000425327.6_2_3:118619838-118620162:-|nuORF	ENST00000425327.6_2_3:118619838-118620162:-|nuORF	ENST00000425327.6_2_3:118619838-118620162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2792663574219	2	461.279452	920.544351	-2.5107	-0.0011581	2.3189	0.0010697	-0.19173	-8.8439E-05	461.2808513951173	32.108	0.46829	32.108	31.948	32.417	0					17	13	2	0	0	0	0.5654	1	11124	11124		25.45	6.0902	1	71780			23171	9431	14917	14977	23500	23500					0.08090081514046688
LAGLPAQLR	9	Unmodified	_LAGLPAQLR_					0	0	0		MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant;MYO15A|p.E2245Kfs*8|1|0.44|ENSG00000091536|chr17:18148533-18148533|G/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A	MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant	MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7924499511719	2	469.792727	937.5709	0.5314	0.00024965	-0.9406	-0.00044189	-0.4092	-0.00019224	469.7921852282408	17.168	0.22048	17.168	17.073	17.293	0					9	4	3	0	0	0	0.47428	1	4925	4925		35.201	3.2459	1	436920			23172	1861	14918	14978	23501	23501					0.09961770405357129
LAGLSAALLR	10	Unmodified	_LAGLSAALLR_					0	0	0		ENSG00000112294|ENST00000357578|ALDH5A1;nc|ENSG00000112294|P51649-2|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	328.8784484863281	3	328.878198	983.612765	-0.66761	-0.00021956	0.16036	5.2739E-05	-0.50725	-0.00016682	328.8783640583434	27.415	0.11742	27.415	27.356	27.474	0					7	4	2	0	0	0	0.68218	1	8729	8729		22.58	0	1	181360			23173	2731	14919	14979	23502	23502					0.12030326093895383
LAGLVSGE	8	Unmodified	_LAGLVSGE_					0	0	0		nc|ENSG00000090612|Q14587-8|ZNF268;ENST00000484380.2_1_14:74755361-74755529:-|nuORF;ENST00000588312.2_1_12:133758227-133778745:+|nuORF;ENST00000534953.1_1_12:133768360-133778745:+|nuORF	nc|ENSG00000090612|Q14587-8|ZNF268	nc|ENSG00000090612|Q14587-8|ZNF268	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.21002197265625	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.945	1	51.945	51.445	52.445	0								0	0	0	1.7419	1	18493	18493		28.254	0	1				23174	11448	14920	14980	23503	23503					0.01934449052009768
LAGPARDAVEE	11	Unmodified	_LAGPARDAVEE_					0	0	0		ENST00000345617.7_1_2:239974412-239974691:-|nuORF	ENST00000345617.7_1_2:239974412-239974691:-|nuORF	ENST00000345617.7_1_2:239974412-239974691:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2901611328125	2	564.288202	1126.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.541	1	34.541	34.041	35.041	0								0	0	0	0.40876	1	13322	13322		35.152	0.97948	1				23175	8762	14921	14981	23504	23504					0.0036333225839371153
LAGQATTAY	9	Unmodified	_LAGQATTAY_					0	0	0		ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF;nc|ENSG00000019582|P04233-2|CD74;ENSG00000019582|ENST00000009530|CD74;nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-4|CD74	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2292175292969	2	448.229625	894.444697	-0.41044	-0.00018397	-0.50647	-0.00022702	-0.91692	-0.00041099	448.2293829639398	28.169	0.11924	28.169	28.109	28.228	0					4	2	2	0	0	0	0.078509	1	10188	10188		85.161	24.189	1	407950			23176	1097	14922	14982	23505	23505					-0.0067478089058568
LAGTRVNGVY	10	Unmodified	_LAGTRVNGVY_					0	0	0			REV__ENST00000556809.1_1_14:23791392-23792332:+|nuORF	REV__ENST00000556809.1_1_14:23791392-23792332:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2922973632812	2	525.290548	1048.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.372	1	43.372	42.872	43.872	0								0	0	0	0.41253	1	17354	17354		26.693	14.486	1		+		23177	20256	14923	14983	23506	23506					0.04420261191808095
LAGTTVTIV	9	Unmodified	_LAGTTVTIV_					0	0	0		nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;LRRC43|p.I561Sfs*10|2|0.27|ENSG00000158113|chr12:122200799-122200799|C/-|frameshift_variant;ENSG00000158113|ENST00000339777|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.765625	2	437.765843	873.517133	-0.40101	-0.00017555	-0.043953	-1.9241E-05	-0.44496	-0.00019479	437.76582167412107	35.332	0.1888	35.332	35.258	35.447	0					10	5	2	0	0	0	0.25109	1	13693	13693		55.504	4.1688	1	126580			23178	5245	14924	14984	23507	23507					0.07531553182991502
LAGTVTPAR	9	Unmodified	_LAGTVTPAR_					0	0	0		ENST00000374597.3_3_X:67913533-67935165:+|nuORF	ENST00000374597.3_3_X:67913533-67935165:+|nuORF	ENST00000374597.3_3_X:67913533-67935165:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.261474609375	2	443.261259	884.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.456	1	27.456	26.956	27.956	0								0	0	0	0.27025	1	8984	8984		40.778	0.20554	1				23179	9013	14925	14985	23508	23508					0.0610920461731439
LAGWLEGEK	9	Unmodified	_LAGWLEGEK_					0	0	0			REV__ENST00000257934.8_2_12:53662091-53662609:+|nuORF	REV__ENST00000257934.8_2_12:53662091-53662609:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7670593261719	2	501.766374	1001.5182	0.69574	0.0003491	1.9505	0.00097868	2.6462	0.0013278	501.7675274098962	29.472	0.49974	29.472	29.207	29.706	0					28	12	4	0	0	0	0.17854	1	10476	10476		64.207	5.9773	1	250500	+		23180	17991	14926	14986	23509	23509					0.01749767551905279
LAGWVAVGLE	10	Unmodified	_LAGWVAVGLE_					0	0	0		VSIG10|p.T110Pfs*14|1|0.13|ENSG00000176834|chr12:118095557-118095567|ACCACTGAGTC/-|frameshift_variant;nc|ENSG00000176834|Q8N0Z9-2|VSIG10;ENSG00000176834|ENST00000359236|VSIG10	VSIG10|p.T110Pfs*14|1|0.13|ENSG00000176834|chr12:118095557-118095567|ACCACTGAGTC/-|frameshift_variant	VSIG10|p.T110Pfs*14|1|0.13|ENSG00000176834|chr12:118095557-118095567|ACCACTGAGTC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.78436279296875	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.755	1	38.755	38.255	39.255	0								0	0	0	0.37276	1	15217	15217		38.806	7.2763	1				23181	6625	14927	14987	23510	23510					0.04834644448612835
LAHAGVAL	8	Unmodified	_LAHAGVAL_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.2267150878906	2	376.226688	750.438824	0.2768	0.00010414	-0.34879	-0.00013122	-0.071988	-2.7084E-05	376.2264784003706	28.483	0.24639	28.483	28.396	28.643	0					11	6	2	0	0	0	0.70073	1	10077	10077		33.493	0	1	370540			23182	974	14928	14988	23511	23511					0.053621653884079024
LAHAGVAL	8	Unmodified	_LAHAGVAL_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.2265930175781	2	376.226688	750.438824	0.69548	0.00026166	-1.0478	-0.00039423	-0.35236	-0.00013257	376.2263624532414	28.473	0.26353	28.473	28.365	28.628	0					8	5	2	0	0	0	0.42924	1	10451	10451		67.327	12.433	1	576350			23183	974	14928	14988	23512	23512					0.053621653884079024
LAHAIAGA	8	Unmodified	_LAHAIAGA_					0	0	0		nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-4|NVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.2110290527344	2	362.211038	722.407523	0.48817	0.00017682	-3.066	-0.0011105	-2.5779	-0.00093373	362.2109264582074	19.546	0.2621	19.546	19.396	19.659	0					14	5	3	0	0	0	0.77013	1	6235	6235		24.504	0	1	174650			23184	11563	14929	14989	23513	23513					0.03521592354320546
LAHIGTCL	8	Carbamidomethyl (C)	_LAHIGTC(Carbamidomethyl (C))L_	LAHIGTC(1)L		LAHIGTC(96)L		0	1	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7366943359375	2	442.736563	883.458573	-0.34459	-0.00015256	-0.41121	-0.00018206	-0.75579	-0.00033462	442.73651493458965	32.584	0.21723	32.584	32.492	32.709	0					10	5	3	0	0	0	0.25916	1	11981	11981		96.048	33.069	1	239870			23185	1627	14930	14990	23514	23514	68				0.012181733368606729
LAHKYKEI	8	Unmodified	_LAHKYKEI_					0	0	0			REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2926330566406	2	501.292559	1000.57057	0.94008	0.00047126	-1.6563	-0.00083029	-0.71622	-0.00035904	501.29176752086926	38.019	0.24301	38.019	37.931	38.174	0					19	8	3	0	0	0	0.63077	1	14879	14879		44.117	44.117	1	376550	+		23186	22222	14931	14991	23515	23515					0.07030350685522535
LAHLGSTL	8	Unmodified	_LAHLGSTL_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.23712158203125	2	406.237253	810.459953	-0.12116	-4.9218E-05	0.28816	0.00011706	0.167	6.7843E-05	406.23732504304604	31.118	0.22082	31.118	31.036	31.257	0					15	8	3	0	0	0	0.36926	1	9971	9971		74.517	0	1	203720			23187	6003	14932	14992	23516	23516					0.047141306972775965
LAHLGSTL	8	Unmodified	_LAHLGSTL_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.2370910644531	2	406.237253	810.459953	-0.53017	-0.00021537	0.38222	0.00015527	-0.14795	-6.0101E-05	406.23736501559233	31.41	0.29266	31.41	31.28	31.573	0					15	7	3	0	0	0	0.22837	1	11435	11435		124.32	28.276	1	896830			23188	6003	14932	14992	23517	23517					0.047141306972775965
LAHLGSTL	8	Unmodified	_LAHLGSTL_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.2370300292969	2	406.237253	810.459953	-0.88022	-0.00035758	0.2537	0.00010306	-0.62652	-0.00025452	406.23742970371245	31.156	0.12175	31.156	31.103	31.225	0					8	4	2	0	0	0	0.4434	1	10304	10304		65.897	11.133	1	233470			23189	6003	14932	14992	23518	23518					0.047141306972775965
LAHLHVSR	8	Unmodified	_LAHLHVSR_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.77410888671875	2	466.774868	931.535184	-0.50272	-0.00023465	-0.99914	-0.00046637	-1.5019	-0.00070103	466.7743657395347	22.547	0.21652	22.547	22.438	22.655	0					9	4	3	0	0	0	0.41952	1	7525	7525		68.485	5.1784	1	1575400			23190	4241	14933	14993	23519	23519					0.06667732948380944
LAHMPLDK	8	Unmodified	_LAHMPLDK_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7517395019531	2	462.752213	923.489873	-0.71348	-0.00033016	-0.58924	-0.00027267	-1.3027	-0.00060283	462.7522157325513	37.602	0.4316	37.602	37.451	37.882	0					33	13	3	0	0	0	0.49887	1	14299	14299		60.294	0	1	257730			23191	1518	14934	14994	23520	23520					0.025067463709660842
LAHSGSDL	8	Unmodified	_LAHSGSDL_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.2008972167969	2	400.200867	798.387182	-0.089798	-3.5937E-05	-0.052329	-2.0942E-05	-0.14213	-5.6879E-05	400.20080290907407	20.099	0.24763	20.099	19.992	20.239	0					16	8	3	0	0	0	0.54629	1	5297	5297		55.504	3.205	1	750590			23192	7559	14935	14995	23521	23521					-0.02007623096142197
LAHSGSDL	8	Unmodified	_LAHSGSDL_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2007141113281	2	400.200867	798.387182	-0.36787	-0.00014722	0.10311	4.1266E-05	-0.26476	-0.00010596	400.20088108458805	20.428	0.52625	20.428	20.322	20.848	0					22	11	4	0	0	0	0.11544	1	6342	6342		170.31	81.671	1	4550900			23193	7559	14935	14995	23522	23522					-0.02007623096142197
LAHSGSDL	8	Unmodified	_LAHSGSDL_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.2009582519531	2	400.200867	798.387182	-0.85224	-0.00034107	0.7961	0.0003186	-0.056138	-2.2467E-05	400.20117104172056	20.116	0.1955	20.116	20.048	20.243	0					12	6	3	0	0	0	0.34985	1	5553	5553		76.847	8.3619	1	703560			23194	7559	14935	14995	23523	23523					-0.02007623096142197
LAHTYLKSL	9	Unmodified	_LAHTYLKSL_					0	0	0		LRRC74B|p.D192Y|1|0.06|ENSG00000187905|chr22:21049109-21049109|G/T|missense_variant	LRRC74B|p.D192Y|1|0.06|ENSG00000187905|chr22:21049109-21049109|G/T|missense_variant	LRRC74B|p.D192Y|1|0.06|ENSG00000187905|chr22:21049109-21049109|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3035278320312	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.842	1	48.842	48.342	49.342	0								0	0	0	0.36266	1	19383	19383		21.96	1.013	1				23195	11331	14936	14996	23524	23524					0.0762661985700106
LAHVEGPHVAC	11	Unmodified	_LAHVEGPHVAC_					0	0	0		PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant;PLXNB3|p.G1176Afs*22|1|0.15|ENSG00000198753|chrX:153774191-153774191|G/-|frameshift_variant;PLXNB3|p.V1655Cfs*7|1|0.56|ENSG00000198753|chrX:153777236-153777236|G/-|frameshift_variant;ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant	PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.7835083007812	2	566.782033	1131.54951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.43	1	19.43	18.93	19.93	0								0	0	0	0.45674	1	6005	6005		10.866	0	1				23196	7602	14937	14997	23525	23525					-0.01099982685627765
LAHVGPRL	8	Unmodified	_LAHVGPRL_					0	0	0		ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF	ENSG00000132207|ENST00000251303|SLX1A	ENSG00000132207|ENST00000251303|SLX1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.7666931152344	2	431.766512	861.518471	1.0226	0.00044153	-1.7208	-0.00074297	-0.69816	-0.00030144	431.76596268060916	24.598	0.16108	24.598	24.516	24.677	0					7	4	2	0	0	0	0.6282	1	7293	7293		44.531	16.277	1	71234			23197	3769	14938	14998	23526	23526					0.08217232062418134
LAHVGPRL	8	Unmodified	_LAHVGPRL_					0	0	0		ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF	ENSG00000132207|ENST00000251303|SLX1A	ENSG00000132207|ENST00000251303|SLX1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.7666015625	2	431.766512	861.518471	0.17677	7.6325E-05	0.099385	4.2911E-05	0.27616	0.00011924	431.76657650112986	24.922	0.37663	24.922	24.756	25.132	0					19	9	3	0	0	0	0.6282	1	8407	8407		44.531	16.277	1	423230			23198	3769	14938	14998	23527	23527					0.08217232062418134
LAHVGPRL	8	Unmodified	_LAHVGPRL_					0	0	0		ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF	ENSG00000132207|ENST00000251303|SLX1A	ENSG00000132207|ENST00000251303|SLX1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.7664794921875	2	431.766512	861.518471	3.2573	0.0014064	-2.0993	-0.00090639	1.1581	0.00050001	431.7654080362807	24.658	0.23566	24.658	24.534	24.769	0					9	8	2	0	0	0	0.74117	1	7572	7572		28.254	0	1	48015			23199	3769	14938	14998	23528	23528					0.08217232062418134
LAIAAYWAL	9	Unmodified	_LAIAAYWAL_					0	0	0		nc|ENSG00000005981|Q9Y574-2|ASB4;ASB4|p.Y370Lfs*10|1|0.31|ENSG00000005981|chr7:95537581-95537582|-/T|frameshift_variant;ENSG00000005981|ENST00000325885|ASB4	nc|ENSG00000005981|Q9Y574-2|ASB4	nc|ENSG00000005981|Q9Y574-2|ASB4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.28228759765625	2	496.284203	990.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.623	1	35.623	35.123	36.123	0								0	0	0	0.28056	1	11673	11673		39.021	4.849	1				23200	238	14939	14999	23529	23529					0.058198497995590515
LAIAKCLA	8	Unmodified	_LAIAKCLA_					0	0	0			REV__ENST00000598497.1_1_19:58600016-58601841:-|nuORF	REV__ENST00000598497.1_1_19:58600016-58601841:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.74639892578125	2	401.746399	801.478245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.581	1	32.581	32.081	33.081	0								0	0	0	1.7419	1	11345	11345		37.028	0	1		+		23201	20582	14940	15000	23530	23530					0.06956549347626151
LAIGIVIKA	9	Unmodified	_LAIGIVIKA_					0	0	0			REV__ENSG00000101292|ENST00000678254|PROKR2	REV__ENSG00000101292|ENST00000678254|PROKR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.8110656738281	2	449.310221	896.605889	-0.30338	-0.00013631	-0.17247	-7.7492E-05	-0.47585	-0.00021381	449.3100991686228	42.882	0.16757	42.882	42.799	42.966	0					15	10	2	0	0	0	0.41354	1	13589	13589		40.573	0	1	114790	+		23202	13596	14941	15001	23531	23531					0.15345013213323
LAIGQKKY	8	Unmodified	_LAIGQKKY_					0	0	0			REV__ENSG00000148158|ENST00000374232|SNX30	REV__ENSG00000148158|ENST00000374232|SNX30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7810974121094	2	460.781828	919.549102	-0.44233	-0.00020382	-0.11962	-5.5118E-05	-0.56195	-0.00025893	460.7817627510848	32.839	0.7716	32.839	32.318	33.09	0					49	32	2	0	0	0	0.70055	1	10534	10534		33.516	3.0119	1	68131	+		23203	15372	14942	15002	23532	23532					0.08610965656794178
LAIILGISSK	10	Unmodified	_LAIILGISSK_					0	0	0		nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8324279785156	2	507.831517	1013.64848	-0.029887	-1.5178E-05	0.066445	3.3743E-05	0.036558	1.8565E-05	507.8316056582128	39.368	0.1533	39.368	39.308	39.461	0					7	5	2	0	0	0	0.52275	1	14983	14983		42.864	1.4377	1	61624			23204	3958	14943	15003	23533	23533					0.1422036355089631
LAIKPGTSV	9	Unmodified	_LAIKPGTSV_					0	0	0		nc|ENSG00000197713|Q96AT9-5|RPE;nc|ENSG00000197713|Q96AT9-3|RPE;nc|ENSG00000197713|Q96AT9-4|RPE;nc|ENSG00000197713|Q96AT9-2|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2735900878906	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.25	1	36.25	35.75	36.75	0								0	0	0	0.15451	1	12281	12281		58.782	2.0609	1				23205	7489	14944	15004	23534	23534					0.08623259419903206
LAIQGSAPLL	10	Unmodified	_LAIQGSAPLL_					0	0	0			REV__ENSG00000178896|ENST00000316052|EXOSC4	REV__ENSG00000178896|ENST00000316052|EXOSC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.7999267578125	2	491.800217	981.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.194	1	40.194	39.694	40.694	0								0	0	0	0.38797	1	13467	13467		34.173	0	1		+		23206	16750	14945	15005	23535	23535					0.09435217482700864
LAIQNPKF	8	Unmodified	_LAIQNPKF_					0	0	0			REV__ENSG00000283434|ENST00000637986|CSNKA2IP	REV__ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7753601074219	2	465.774003	929.533452	2.6248	0.0012226	0.20376	9.4905E-05	2.8286	0.0013175	465.7741087221291	33.424	0.3167	33.424	33.317	33.633	0					19	6	4	0	0	0	0.55361	1	12715	12715		54.765	1.4132	1	2515700	+		23207	17853	14946	15006	23536	23536					0.06586679139752505
LAIVHGDVLA	10	Unmodified	_LAIVHGDVLA_					0	0	0			REV__ENST00000373465.2_1_X:46278845-46279157:-|nuORF	REV__ENST00000373465.2_1_X:46278845-46279157:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5339050292969	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.111	1	25.111	24.611	25.611	0								0	0	0	0.4201	1	8872	8872		16.717	3.2633	1		+		23208	18683	14947	15007	23537	23537					0.07810333339944009
LAKALISGA	9	Unmodified	_LAKALISGA_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2680358886719	2	422.268553	842.522553	-1.2038	-0.00050833	0.25349	0.00010704	-0.95031	-0.00040128	422.2686007827804	29.626	0.088547	29.626	29.565	29.653	0					5	3	2	0	0	0	0.5879	1	9666	9666		23.042	0	1	70270	+		23209	15558	14948	15008	23538	23538					0.0949927676548441
LAKAYKTSI	9	Unmodified	_LAKAYKTSI_					0	0	0		SEMA6D|p.E377K|1|0.1|ENSG00000137872|chr15:47764669-47764669|G/A|missense_variant	SEMA6D|p.E377K|1|0.1|ENSG00000137872|chr15:47764669-47764669|G/A|missense_variant	SEMA6D|p.E377K|1|0.1|ENSG00000137872|chr15:47764669-47764669|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.8001403808594	2	497.800217	993.585882	-0.28367	-0.00014121	0.26489	0.00013186	-0.018782	-9.3497E-06	497.8004285703155	23.394	0.15079	23.394	23.294	23.444	0					6	3	2	0	0	0	0.35021	1	7751	7751		45.972	3.5761	1	428980			23210	22383	14949	15009	23539	23539					0.0888321748270755
LAKDNEGLAL	10	Unmodified	_LAKDNEGLAL_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2896728515625	2	522.290214	1042.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.813	1	38.813	38.313	39.313	0								0	0	0	0.37602	1	12643	12643		37.812	3.8899	1		+		23211	12081	14950	15010	23540	23540					0.04629421752088092
LAKGGLLL	8	Unmodified	_LAKGGLLL_					0	0	0		ENST00000310454.10_1_2:157426665-157427646:+|nuORF	ENST00000310454.10_1_2:157426665-157427646:+|nuORF	ENST00000310454.10_1_2:157426665-157427646:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.7681579589844	2	392.768189	783.521825	0.21727	8.5338E-05	0.16758	6.5821E-05	0.38486	0.00015116	392.7682244318889	37.24	0.22316	37.24	37.178	37.402	0					15	11	2	0	0	0	0.25916	1	13332	13332		96.048	0	1	175440			23212	8547	14951	15011	23541	23541					0.12140482116433304
LAKGTKDKE	9	Unmodified	_LAKGTKDKE_					0	0	0			REV__ADGB|p.S76Afs*20|1|0.49|ENSG00000118492|chr6:146635522-146635522|A/-|frameshift_variant	REV__ADGB|p.S76Afs*20|1|0.49|ENSG00000118492|chr6:146635522-146635522|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2831115722656	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.624	1	47.624	47.124	48.124	0								0	0	0	0.3368	1	15082	15082		27.882	1.0861	1		+		23213	12086	14952	15012	23542	23542					0.06057439097662609
LAKLLFLCS	9	Unmodified	_LAKLLFLCS_					0	0	0			REV__ENSG00000124116|ENST00000243938|WFDC3	REV__ENSG00000124116|ENST00000243938|WFDC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5342712402344	3	336.536785	1006.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.878	1	26.878	26.378	27.378	0								0	0	0	0.32356	1	8501	8501		30.318	0	1		+		23214	14376	14953	15013	23543	23543					0.08549349616009749
LAKPAPQTL	9	Unmodified	_LAKPAPQTL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7870178222656	2	469.78711	937.559667	-0.52982	-0.0002489	-0.08483	-3.9852E-05	-0.61465	-0.00028875	469.7869815289411	27.518	0.72588	27.518	26.952	27.678	0					24	14	2	0	0	0	0.4966	1	9870	9870		32.812	6.1195	1	172560			23215	1373	14954	15014	23544	23544					0.08838948311222339
LAKRNRRA	8	Unmodified	_LAKRNRRA_					0	0	0		ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27	ENST00000471144.1_1_20:47852884-47860241:+|nuORF	ENST00000471144.1_1_20:47852884-47860241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.8782043457031	3	328.877303	983.61008	3.0027	0.0009875	-0.28904	-9.506E-05	2.7136	0.00089244	328.87726845805594	27.585	0.27046	27.585	27.476	27.746	0					11	5	3	0	0	0	0.74117	1	9904	9904		30.504	9.5567	1	548630			23216	3360	14955	15015	23545	23545					0.11761915479598883
LAKSAVSLPA	10	Unmodified	_LAKSAVSLPA_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.79229736328125	2	478.792392	955.570232	0.0067085	3.212E-06	-0.016201	-7.757E-06	-0.0094928	-4.5451E-06	478.79219218217435	34.753	0.31881	34.753	34.623	34.942	0					18	11	2	0	0	0	0.60076	1	12330	12330		34.173	1.3601	1	42541	+		23217	14103	14956	15016	23546	23546					0.09066930965650499
LAKSSGSAL	9	Unmodified	_LAKSSGSAL_					0	0	0		ENSG00000104522|ENST00000425753|GFUS;ENST00000531473.5_1_8:144695082-144696778:-|nuORF	ENSG00000104522|ENST00000425753|GFUS;ENST00000531473.5_1_8:144695082-144696778:-|nuORF	ENST00000531473.5_1_8:144695082-144696778:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.2397155761719	2	417.239993	832.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.398	1	19.398	18.898	19.898	0								0	0	0	0.17378	1	5011	5011		54.776	2.4771	1				23218	2293;10437	14957	15017	23547	23547					0.04249809489101608
LAKTEKER	8	Unmodified	_LAKTEKER_					0	0	0			REV__SYNDIG1-MYH9|1|fusion;REV__nc|ENSG00000133026|P35580|MYH10;REV__nc|ENSG00000100345|P35579-2|MYH9;REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7847595214844	2	487.785099	973.555644	0.46652	0.00022756	-1.1305	-0.00055145	-0.664	-0.00032389	487.7845682650016	14.064	0.069366	14.064	13.997	14.067	0					4	2	2	0	0	0	0.74405	1	2918	2918		27.882	2.3082	1	39800	+		23219	14690;13544;14706;21616	14958	15018	23548	23548					0.0678085881751258
LAKTLEAAL	9	Unmodified	_LAKTLEAAL_					0	0	0			REV__ENST00000411625.2_1_9:127730575-127731109:-|nuORF	REV__ENST00000411625.2_1_9:127730575-127731109:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.78814697265625	2	465.286943	928.559333	-0.68216	-0.0003174	-0.10477	-4.8748E-05	-0.78693	-0.00036615	465.286849303144	39.431	0.27477	39.431	39.333	39.608	0					16	10	2	0	0	0	0.30951	1	15006	15006		49.442	3.4693	1	245540	+		23220	19005	14959	15019	23549	23549					0.09219528591370363
LAKVGIAL	8	Unmodified	_LAKVGIAL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.7679138183594	2	392.768189	783.521825	0.57155	0.00022449	-0.57068	-0.00022414	0.00086904	3.4133E-07	392.7679676816277	37.211	0.13425	37.211	37.14	37.274	0					11	7	2	0	0	0	0.36926	1	12200	12200		74.517	11.538	1	47914			23221	1802	14960	15020	23550	23550					0.12140482116410567
LAKVGIAL	8	Unmodified	_LAKVGIAL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.7679443359375	2	392.768189	783.521825	0.71047	0.00027905	-0.85707	-0.00033663	-0.1466	-5.7581E-05	392.7676095555884	37.511	0.11782	37.511	37.434	37.552	0					6	3	2	0	0	0	0.24533	1	14232	14232		109.7	18.765	1	66146			23222	1802	14960	15020	23551	23551					0.12140482116410567
LAKVGIAL	8	Unmodified	_LAKVGIAL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.7682189941406	2	392.768189	783.521825	0.88618	0.00034806	-0.95104	-0.00037354	-0.064855	-2.5473E-05	392.7677432970269	37.528	0.25631	37.528	37.423	37.68	0					16	7	3	0	0	0	0.28675	1	14211	14211		86.935	0	1	384790			23223	1802	14960	15020	23552	23552					0.12140482116410567
LAKVGIAL	8	Unmodified	_LAKVGIAL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.76837158203125	2	392.768189	783.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.241	1	37.241	36.741	37.741	0								0	0	0	1.7419	1	12597	12597		119.22	23.173	1				23224	1802	14960	15020	23553	23553					0.12140482116410567
LAKVGIAL	8	Unmodified	_LAKVGIAL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.7684020996094	2	392.768189	783.521825	0.12586	4.9432E-05	-0.24535	-9.6366E-05	-0.11949	-4.6934E-05	392.7680399484079	37.502	0.37067	37.502	37.392	37.763	0					19	11	3	0	0	0	0.2364	1	14651	14651		134.12	24.415	1	778000			23225	1802	14960	15020	23554	23554					0.12140482116410567
LAKVGIAL	8	Unmodified	_LAKVGIAL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.76812744140625	2	392.768189	783.521825	-0.66882	-0.00026269	0.62481	0.00024541	-0.044007	-1.7285E-05	392.7683839893848	37.425	0.35867	37.425	37.315	37.674	0					19	7	4	0	0	0	0.2364	1	14617	14617		134.12	24.415	1	1383800			23226	1802	14960	15020	23555	23555					0.12140482116410567
LALAIGAKTYK	11	Unmodified	_LALAIGAKTYK_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.8570556640625	2	574.855524	1147.69649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.841	1	33.841	33.341	34.341	0								0	0	0	0.45674	1	11920	11920		17.468	3.3309	1				23227	1720	14961	15021	23556	23556					0.12855437470943798
LALAVNVPPGG	11	Unmodified	_LALAVNVPPGG_					0	0	0			REV__GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant	REV__GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53424072265625	3	336.53432	1006.58113	0.24149	8.127E-05	-0.3718	-0.00012512	-0.13031	-4.3853E-05	336.5341933834859	27.518	1.163	27.518	27.244	28.407	0					62	39	2	0	0	0	0.78918	1	8455	8455		10.587	0	1	131520	+		23228	17131	14962	15022	23557	23557					0.07810333339955378
LALCNSSRK	9	Unmodified	_LALCNSSRK_					0	0	0			REV__nc|ENSG00000153303|Q8N878-2|FRMD1	REV__nc|ENSG00000153303|Q8N878-2|FRMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.27008056640625	2	496.271301	990.528049	-0.68005	-0.00033749	-1.6353	-0.00081158	-2.3154	-0.0011491	496.2703618701567	40.598	0.23378	40.598	40.453	40.687	0					7	5	2	0	0	0	0.35021	1	16161	16161		45.972	5.3996	1	41984	+		23229	15539	14963	15023	23558	23558					0.03240632285644551
LALCVRILTTY	11	Unmodified	_LALCVRILTTY_					0	0	0		nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1;ENST00000504216.5_1_4:103822276-103853306:-|nuORF;ENSG00000164037|ENST00000296422|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	633.369384765625	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.773	1	52.773	52.273	53.273	0								0	0	0	0.45614	1	15639	15639		24.519	1.9395	1				23230	11617	14964	15024	23559	23559					0.09955749282016768
LALDASQHSSL	11	Unmodified	_LALDASQHSSL_					0	0	0		nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.296142578125	2	571.296027	1140.5775	-0.030852	-1.7626E-05	0.92792	0.00053011	0.89706	0.00051249	571.2961610537297	33.19	0.22085	33.19	33.079	33.3	0					16	6	3	0	0	0	0.11154	1	12251	12251		86.882	35.546	1	284690			23231	2815	14965	15025	23560	23560					0.012836187754373896
LALDASQHSSL	11	Unmodified	_LALDASQHSSL_					0	0	0		nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.2965087890625	2	571.296027	1140.5775	0.030605	1.7484E-05	-0.4951	-0.00028285	-0.46449	-0.00026536	571.2959055576604	33.174	0.14082	33.174	33.079	33.22	0					8	3	3	0	0	0	0.6208	1	12666	12666		35.178	3.2234	1	192810			23232	2815	14965	15025	23561	23561					0.012836187754373896
LALDASQHSSL	11	Unmodified	_LALDASQHSSL_					0	0	0		nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2964477539062	2	571.296027	1140.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.152	1	33.152	32.652	33.652	0								0	0	0	0.00056294	1	12573	12573		122.94	42.485	1				23233	2815	14965	15025	23562	23562					0.012836187754373896
LALFLLLP	8	Unmodified	_LALFLLLP_					0	0	0			REV__ENST00000469694.5_1_2:241404001-241405704:+|nuORF	REV__ENST00000469694.5_1_2:241404001-241405704:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.3005676269531	2	450.301865	898.589176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.911	1	41.911	41.411	42.411	0								0	0	0	1.7419	1	16472	16472		43.626	0	1		+		23234	13098	14966	15026	23563	23563					0.13582512327377572
LALFSTKK	8	Unmodified	_LALFSTKK_					0	0	0			REV__ENST00000484368.1_1_1:172362920-172362983:-|nuORF	REV__ENST00000484368.1_1_1:172362920-172362983:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2837829589844	2	454.284203	906.553853	-0.35606	-0.00016175	-0.14973	-6.8019E-05	-0.50579	-0.00022977	454.28412139016154	26.024	1.2947	26.024	25.214	26.508	0					88	40	3	0	0	0	0.60719	1	7940	7940		47.916	1.9636	1	347430	+		23235	19633	14967	15027	23564	23564					0.0968384979955772
LALGPGEGR	9	Unmodified	_LALGPGEGR_					0	0	0			REV__ENST00000356731.9_1_5:179050060-179050201:-|nuORF	REV__ENST00000356731.9_1_5:179050060-179050201:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2455139160156	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.079	1	16.079	15.579	16.579	0								0	0	0	0.19749	1	4525	4525		51.335	3.6781	1		+		23236	18525	14968	15028	23565	23565					0.03716631583245089
LALGQNKPHT	10	Unmodified	_LALGQNKPHT_					0	0	0		KIF2B|p.K542Nfs*2|2|0.38|ENSG00000141200|chr17:53824653-53824653|A/-|frameshift_variant;ENSG00000141200|ENST00000268919|KIF2B	KIF2B|p.K542Nfs*2|2|0.38|ENSG00000141200|chr17:53824653-53824653|A/-|frameshift_variant	KIF2B|p.K542Nfs*2|2|0.38|ENSG00000141200|chr17:53824653-53824653|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.2058410644531	3	360.204974	1077.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.32	1	49.32	48.82	49.82	0								0	0	0	0.4201	1	19511	19511		10.587	0	1				23237	4432	14969	15029	23566	23566					0.057399500831252226
LALHPDTLL	9	Unmodified	_LALHPDTLL_					0	0	0			REV__ENSG00000010932|ENST00000617670|FMO1	REV__ENSG00000010932|ENST00000617670|FMO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7922668457031	2	496.792392	991.570232	0.75776	0.00037645	-0.21187	-0.00010525	0.54589	0.00027119	496.7922332831069	37.355	0.20302	37.355	37.262	37.466	0					9	6	2	0	0	0	0.41354	1	14605	14605		40.573	7.057	1	79344	+		23238	12901	14970	15030	23567	23567					0.07410930965670559
LALIIVGFGT	10	Unmodified	_LALIIVGFGT_					0	0	0		MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant;MS4A14|p.D504Vfs*50|1|0.11|ENSG00000166928|chr11:60416476-60416477|-/GGTCTCTTCC|frameshift_variant;nc|ENSG00000166928|Q96JA4-2|MS4A14;ENSG00000166928|ENST00000300187|MS4A14;nc|ENSG00000166928|Q96JA4-5|MS4A14	MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant	MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.2095947265625	3	335.211066	1002.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.149	1	14.149	13.649	14.649	0								0	0	0	0.4201	1	2870	2870		17.468	3.3309	1				23239	5951	14971	15031	23568	23568					0.11016692005136974
LALLEVIH	8	Unmodified	_LALLEVIH_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2840576171875	2	454.284203	906.553853	-0.35606	-0.00016175	-0.14973	-6.8019E-05	-0.50579	-0.00022977	454.28412139016154	26.024	1.2947	26.024	25.214	26.508	0					88	40	3	0	0	0	0.66238	1	7798	7798		39.021	0	1	347430	+		23240	15258	14972	15032	23569	23569					0.0968384979955772
LALLGAPPPK	10	Unmodified	_LALLGAPPPK_					0	0	0		ENST00000595973.2_1_19:18493140-18496906:+|nuORF	ENST00000595973.2_1_19:18493140-18496906:+|nuORF	ENST00000595973.2_1_19:18493140-18496906:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.8132629394531	2	488.813128	975.611703	0.61338	0.00029983	-0.89176	-0.0004359	-0.27838	-0.00013608	488.81266242597286	36.536	1.407	36.536	35.532	36.939	0					86	41	3	0	0	0	0.33577	1	14226	14226		63.306	0	1	581750			23241	11002	14973	15033	23570	23570					0.12292111724991628
LALLGAPPPK	10	Unmodified	_LALLGAPPPK_					0	0	0		ENST00000595973.2_1_19:18493140-18496906:+|nuORF	ENST00000595973.2_1_19:18493140-18496906:+|nuORF	ENST00000595973.2_1_19:18493140-18496906:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.8130798339844	2	488.813128	975.611703	-0.71236	-0.00034821	0.2009	9.8204E-05	-0.51146	-0.00025001	488.81320934830495	36.588	1.4828	36.588	35.447	36.93	0					68	43	3	0	0	0	0.4943	1	13915	13915		45.952	7.1458	1	579990			23242	11002	14973	15033	23571	23571					0.12292111724991628
LALLNNKAL	9	Unmodified	_LALLNNKAL_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.3077392578125	2	485.30821	968.601866	0.026242	1.2735E-05	-0.48313	-0.00023447	-0.45688	-0.00022173	485.30790013504634	36.695	0.27264	36.695	36.559	36.831	0					35	15	3	0	0	0	0.30268	1	12008	12008		50.025	4.0726	1	205010	+		23243	17233	14974	15034	23572	23572					0.11630923719599195
LALLPGQHE	9	Unmodified	_LALLPGQHE_					0	0	0		ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.27264404296875	2	489.274367	976.53418	0.60805	0.0002975	-1.3033	-0.00063768	-0.69526	-0.00034017	489.27377838965396	36.897	0.82705	36.897	36.638	37.466	0					69	25	5	0	0	0	0.32741	1	14363	14363		47.916	7.343	1	12743000			23244	10836	14975	15035	23573	23573					0.04497473788808293
LALLSTGVGL	10	Unmodified	_LALLSTGVGL_					0	0	0			REV__nc|ENSG00000164050|O43157-2|PLXNB1	REV__nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2950134277344	2	472.294768	942.574983	-0.024232	-1.1445E-05	0.24642	0.00011638	0.22219	0.00010494	472.2949094467205	37.49	0.18926	37.49	37.434	37.623	0					15	10	2	0	0	0	0.69166	1	12272	12272		23.042	1.0826	1	48500	+		23245	15951	14976	15036	23574	23574					0.10139815108436778
LALNYQFCIQ	10	Unmodified	_LALNYQFCIQ_					0	0	0		nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL;ENST00000463899.5_1_1:182781291-182795122:+|nuORF;nc|ENSG00000135838|Q9BXD5-2|NPL	nc|ENSG00000135838|Q9BXD5-3|NPL	nc|ENSG00000135838|Q9BXD5-3|NPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	606.8078002929688	2	606.807716	1211.60088	0.46417	0.00028166	-1.2657	-0.00076802	-0.80151	-0.00048636	606.8072441140879	14.115	0.15907	14.115	14.058	14.217	0					5	3	2	0	0	0	0.69166	1	3601	3601		23.042	1.3567	1	281610			23246	4027	14977	15037	23575	23575					0.00354341288402793
LALPHGLSE	9	Unmodified	_LALPHGLSE_					0	0	0			REV__ENST00000474488.1_1_2:234343429-234350860:+|nuORF	REV__ENST00000474488.1_1_2:234343429-234350860:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.760986328125	2	468.761092	935.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.373	1	26.373	25.873	26.873	0								0	0	0	0.20652	1	8007	8007		50.025	5.4935	1		+		23247	19518	14978	15038	23576	23576					0.037297848974731096
LALPLYQQKE	10	Unmodified	_LALPLYQQKE_					0	0	0			REV__nc|ENSG00000121892|Q29RF7-3|PDS5A	REV__nc|ENSG00000121892|Q29RF7-3|PDS5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.5626220703125	3	401.564168	1201.67067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.938	1	22.938	22.438	23.438	0								0	0	0	0.4044	1	6823	6823		29.17	1.0886	1		+		23248	14319	14979	15039	23577	23577					0.07790543228634306
LALPPLNNG	9	Unmodified	_LALPPLNNG_					0	0	0			REV__DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant	REV__DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.76312255859375	2	454.763635	907.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.185	1	33.185	32.685	33.685	0								0	0	0	0.25856	1	11120	11120		42.474	0	1		+		23249	12743	14980	15040	23578	23578					0.055260887600866226
LALQLGAAGPP	11	Unmodified	_LALQLGAAGPP_					0	0	0			REV__ENST00000405692.2_3_7:558637-559858:-|nuORF	REV__ENST00000405692.2_3_7:558637-559858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341491699219	3	336.53432	1006.58113	0.094621	3.1843E-05	-0.32526	-0.00010946	-0.23064	-7.7619E-05	336.5340999491677	51.854	0.2168	51.854	51.742	51.959	0					17	13	2	0	0	0	0.79725	1	15452	15452		9.6461	0	1	44899	+		23250	18972	14981	15041	23579	23579					0.0781033333993264
LALRGKVTGGQ	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LALRGKVTGGQ_					1	0	0		ENST00000602243.5_1_19:39847430-39847586:+|nuORF	ENST00000602243.5_1_19:39847430-39847586:+|nuORF	ENST00000602243.5_1_19:39847430-39847586:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.3389892578125	2	571.33803	1140.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.338	1	26.338	25.838	26.838	0								0	0	0	0.38672	1	7991	7991		40.058	7.3076	1				23251	11042	14982	15042	23580	23580					0.09680194663019392
LALRSMRP	8	Unmodified	_LALRSMRP_					0	0	0		ENST00000288235.8_1_15:59664913-59665042:-|nuORF	ENST00000288235.8_1_15:59664913-59665042:-|nuORF	ENST00000288235.8_1_15:59664913-59665042:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2799072265625	2	472.278929	942.543305	0.58596	0.00027674	-0.058879	-2.7807E-05	0.52708	0.00024893	472.27890076890566	32.368	0.29285	32.368	32.274	32.567	0					9	7	2	0	0	0	0.52345	1	12306	12306		57.811	0	1	308310			23252	8429	14983	15043	23581	23581					0.06973543873482413
LALSKLRRR	9	Unmodified	_LALSKLRRR_					0	0	0			REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.58489990234375	3	371.584008	1111.73019	3.2082	0.0011921	-0.54592	-0.00020286	2.6622	0.00098925	371.5837901233305	37.59	0.40213	37.59	37.484	37.886	0					24	8	4	0	0	0	0.51991	1	14700	14700		30.318	1.1477	1	1608200	+		23253	13461	14984	15044	23582	23582					0.17879903753350845
LALTMVKVF	9	Unmodified	_LALTMVKVF_					0	0	0		ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.31011962890625	2	511.309364	1020.60417	1.2232	0.00062543	0.2205	0.00011274	1.4437	0.00073817	511.3094548715698	31.262	0.59468	31.262	31.027	31.622	0					30	13	4	0	0	0	0.35045	1	11722	11722		45.952	1.4209	1	3301500			23254	6421	14985	15045	23583	23583					0.09469636133064796
LALVLHEL	8	Unmodified	_LALVLHEL_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2840270996094	2	454.284203	906.553853	-0.56181	-0.00025522	0.29009	0.00013178	-0.27172	-0.00012344	454.28428997991364	26.334	1.5246	26.334	25.362	26.886	0					100	34	4	0	0	0	0.55361	1	8977	8977		54.765	3.4292	1	1970200			23255	1127	14986	15046	23584	23584					0.0968384979955772
LALVLLHE	8	Unmodified	_LALVLLHE_					0	0	0			REV__ENST00000512908.2_1_5:70398727-70422449:-|nuORF	REV__ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.28411865234375	2	454.284203	906.553853	-1.1087	-0.00050368	0.22158	0.00010066	-0.88716	-0.00040302	454.28447230294375	26.056	1.1063	26.056	25.27	26.376	0					52	32	3	0	0	0	0.6282	1	8227	8227		44.531	7.5026	1	197170	+		23256	17722	14987	15047	23585	23585					0.09683849799569089
LALVRDEF	8	Unmodified	_LALVRDEF_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.80572509765625	2	481.768917	961.523281	0.077922	3.754E-05	-1.3747	-0.0006623	-1.2968	-0.00062476	481.76855217338846	32.399	0.51053	32.399	32.114	32.625	0					54	22	4	0	0	0	0.7126	1	10545	10545		31.955	0	1	351230	+		23257	17087	14988	15048	23586	23586					0.040980714145121055
LALVSDYMK	9	Oxidation (M)	_LALVSDYM(Oxidation (M))K_		LALVSDYM(1)K		LALVSDYM(66)K	0	0	1			REV__nc|ENSG00000181885|O95471-2|CLDN7	REV__nc|ENSG00000181885|O95471-2|CLDN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2779541015625	2	528.275718	1054.53688	3.4667	0.0018314	0.53572	0.00028301	4.0024	0.0021144	528.2761131341566	27.133	0.57312	27.133	26.868	27.441	0					33	11	4	0	0	0	0.16002	1	9707	9707		66.429	66.429	1	3462700	+		23258	16860	14989	15049	23587	23587		646			0.011795611314255439
LALVTIVKT	9	Unmodified	_LALVTIVKT_					0	0	0		ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant;ITGA1|p.N687Kfs*19|1|0.18|ENSG00000213949|chr5:52918798-52918799|-/A|frameshift_variant;ENSG00000213949|ENST00000282588|ITGA1	ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant	ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.3209228515625	2	479.320786	956.627018	0.021383	1.0249E-05	-0.16182	-7.7564E-05	-0.14044	-6.7315E-05	479.32056291690037	40.566	0.23698	40.566	40.46	40.697	0					15	13	2	0	0	0	0.24095	1	14388	14388		56.721	10.749	1	42451			23259	7801	14990	15050	23588	23588					0.14696978522169957
LAMPGEDLK	9	Oxidation (M)	_LAM(Oxidation (M))PGEDLK_		LAM(1)PGEDLK		LAM(68)PGEDLK	0	0	1		ENSG00000178952|ENST00000313511|TUFM;ENST00000569217.1_1_16:28854298-28855510:-|nuORF	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2506103515625	2	495.252243	988.489932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.81	1	25.81	25.31	26.31	0								0	0	0	0.11313	1	8261	8261		68.485	13.708	1				23260	6743	14991	15051	23589	23589		277			-0.004772984196847574
LAMQQPHSL	9	Unmodified	_LAMQQPHSL_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7694091796875	2	512.765852	1023.51715	1.294	0.00066353	-1.0475	-0.00053711	0.24654	0.00012642	513.2668097258494	35.269	0.36507	35.269	35.028	35.393	0					44	10	6	0	0	0	0.27249	1	13644	13644		52.937	3.4952	1	1161600	+		23261	14901	14992	15052	23590	23590					0.006332299113523732
LAMRPLASL	9	Unmodified	_LAMRPLASL_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000480539.1_1_3:183910945-183911023:+|nuORF;ENST00000468892.5_1_3:183910449-183911483:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2889099121094	2	486.288963	970.563372	0.64428	0.00031331	0.18526	9.0088E-05	0.82954	0.0004034	486.2889843545863	42.111	0.13915	42.111	42.055	42.194	0					12	7	2	0	0	0	0.15163	1	16538	16538		67.494	4.1874	1	121420			23262	5406	14993	15053	23591	23591					0.07691294813446348
LAMSPIGTF	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))LAM(Oxidation (M))SPIGTF_		LAM(1)SPIGTF		LAM(77)SPIGTF	1	0	1			REV__ENSG00000166152|ENST00000299191|C16orf78	REV__ENSG00000166152|ENST00000299191|C16orf78	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.751220703125	2	497.749336	993.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.924	1	31.924	31.424	32.424	0								0	0	0	0.082189	1	11046	11046		76.847	11.043	1		+		23263	16095	14994	15054	23592	23592		616			-0.012883969313406851
LANEHNVAL	9	Unmodified	_LANEHNVAL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7614440917969	2	490.761623	979.508694	-0.72618	-0.00035638	0.60225	0.00029556	-0.12393	-6.082E-05	490.7619109034967	27.838	0.21684	27.838	27.73	27.947	0					6	4	2	0	0	0	0.22377	1	10142	10142		58.782	7.4465	1	249840			23264	1364	14995	15055	23593	23593					0.01811999266362818
LANGQTKVL	9	Unmodified	_LANGQTKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2818603515625	2	472.282192	942.549831	-0.36499	-0.00017238	-0.17046	-8.0506E-05	-0.53546	-0.00025289	472.2820364781157	24.661	0.25937	24.661	24.568	24.828	0					16	7	3	0	0	0	0.020674	1	7311	7311		120.87	40.414	1	1138100			23265	8070	14996	15056	23594	23594					0.0762576030585933
LANGQTKVL	9	Unmodified	_LANGQTKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2818908691406	2	472.282192	942.549831	-0.5818	-0.00027477	0.1233	5.8231E-05	-0.4585	-0.00021654	472.28222125688745	24.978	0.29567	24.978	24.852	25.148	0					19	7	4	0	0	0	0.020674	1	8462	8462		120.87	33.114	1	5910900			23266	8070	14996	15056	23595	23595					0.0762576030585933
LANGQTKVL	9	Unmodified	_LANGQTKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2818298339844	2	472.282192	942.549831	-1.4471	-0.00068343	0.90795	0.00042881	-0.53913	-0.00025462	472.2825691730474	24.709	0.26323	24.709	24.618	24.881	0					16	9	2	0	0	0	0.21419	1	7589	7589		59.931	8.5953	1	1419300			23267	8070	14996	15056	23596	23596					0.0762576030585933
LANGQTKVL	9	Unmodified	_LANGQTKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.28204345703125	2	472.282192	942.549831	0.58659	0.00027704	-1.0182	-0.0004809	-0.43165	-0.00020386	472.28165895790687	24.948	0.61303	24.948	24.694	25.307	0					20	12	4	0	0	0	0.037924	1	8779	8779		101.25	26.998	1	6931500			23268	8070	14996	15056	23597	23597					0.0762576030585933
LANKKDLEEA	10	Unmodified	_LANKKDLEEA_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.8050537109375	2	565.806228	1129.5979	1.2094	0.00068428	-2.1724	-0.0012291	-0.96298	-0.00054486	565.8051493510541	17.482	0.085472	17.482	17.41	17.495	0					5	3	2	0	0	0	0.58189	1	4176	4176		36.447	0	1	41188			23269	1311	14997	15057	23598	23598					0.038287894352379226
LANKLITVY	9	Unmodified	_LANKLITVY_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.81640625	2	517.815867	1033.61718	1.543	0.00079901	-0.97788	-0.00050636	0.56515	0.00029264	517.8154889149688	39.129	0.14619	39.129	39.05	39.196	0					8	5	2	0	0	0	0.39215	1	15383	15383		42.396	11.892	1	109570			23270	2937	14998	15058	23599	23599					0.10171790516801593
LANLTPDGLQ	10	Unmodified	_LANLTPDGLQ_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2825317382812	2	521.282389	1040.55022	0.75482	0.00039347	-0.13605	-7.092E-05	0.61877	0.00032255	521.2822865441669	30.526	0.58261	30.526	30.344	30.927	0					61	23	3	0	0	0	0.55603	1	9827	9827		39.253	1.4413	1	678630	+		23271	16751	14999	15059	23600	23600					0.031571352350511006
LANPHELSL	9	Unmodified	_LANPHELSL_					0	0	0		nc|ENSG00000197312|Q5TDH0-2|DDI2;ENST00000486680.1_1_1:15944165-15960061:+|nuORF;ENSG00000197312|ENST00000480945|DDI2;nc|ENSG00000197312|Q5TDH0-3|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2716369628906	2	497.271824	992.529095	-0.30675	-0.00015254	0.63342	0.00031498	0.32667	0.00016245	497.27203704543814	35.626	0.45732	35.626	35.445	35.903	0					25	12	3	0	0	0	0.048471	1	13352	13352		95.815	1.8087	1	348720			23272	7448	15000	15060	23601	23601					0.03253169926199462
LANPHELSL	9	Unmodified	_LANPHELSL_					0	0	0		nc|ENSG00000197312|Q5TDH0-2|DDI2;ENST00000486680.1_1_1:15944165-15960061:+|nuORF;ENSG00000197312|ENST00000480945|DDI2;nc|ENSG00000197312|Q5TDH0-3|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.27178955078125	2	497.271824	992.529095	-0.74218	-0.00036906	0.70234	0.00034926	-0.039834	-1.9808E-05	497.27222227388853	35.566	0.40591	35.566	35.447	35.853	0					20	11	2	0	0	0	0.032052	1	13798	13798		107.01	33.033	1	363380			23273	7448	15000	15060	23602	23602					0.03253169926199462
LANPHELSL	9	Unmodified	_LANPHELSL_					0	0	0		nc|ENSG00000197312|Q5TDH0-2|DDI2;ENST00000486680.1_1_1:15944165-15960061:+|nuORF;ENSG00000197312|ENST00000480945|DDI2;nc|ENSG00000197312|Q5TDH0-3|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2713928222656	2	497.271824	992.529095	-2.3095	-0.0011485	2.0999	0.0010442	-0.20965	-0.00010425	497.2725474553201	35.353	0.0588	35.353	35.32	35.378	0					4	2	2	0	0	0	0.16002	1	12590	12590		66.429	7.6473	1	63604			23274	7448	15000	15060	23603	23603					0.03253169926199462
LANPHELSL	9	Unmodified	_LANPHELSL_					0	0	0		nc|ENSG00000197312|Q5TDH0-2|DDI2;ENST00000486680.1_1_1:15944165-15960061:+|nuORF;ENSG00000197312|ENST00000480945|DDI2;nc|ENSG00000197312|Q5TDH0-3|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2716064453125	2	497.271824	992.529095	2.9026	0.0014434	-2.7667	-0.0013758	0.13587	6.7564E-05	497.2703373818974	35.509	0.52477	35.509	35.196	35.721	0					20	10	3	0	0	0	0.012231	1	13724	13724		136.27	38.795	1	846440			23275	7448	15000	15060	23604	23604					0.03253169926199462
LANREFHTK	9	Unmodified	_LANREFHTK_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-3|MICAL2	nc|ENSG00000133816|O94851-3|MICAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.5365905761719	3	372.536724	1114.58834	3.2152	0.0011978	-3.3225	-0.0012377	-0.10731	-3.9976E-05	372.53550342839077	24.796	0.40017	24.796	24.595	24.996	0					14	8	2	0	0	0	0.44593	1	8613	8613		37.812	2.6595	1	1333100			23276	3873	15001	15061	23605	23605					0.03563065940352317
LANSLISNSPI	11	Unmodified	_LANSLISNSPI_					0	0	0			REV__nc|ENSG00000006634|Q9UBU7-2|DBF4	REV__nc|ENSG00000006634|Q9UBU7-2|DBF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8170166015625	2	564.816596	1127.61864	0.16888	9.5388E-05	0.45199	0.00025529	0.62088	0.00035068	564.8168309607851	28.952	0.72194	28.952	28.645	29.367	0					46	15	5	0	0	0	0.33911	1	10766	10766		58.246	8.7102	1	5762400	+		23277	12670	15002	15062	23606	23606					0.059933798148904316
LANVEGLSV	9	Unmodified	_LANVEGLSV_					0	0	0		nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN1A|p.G913Wfs*2|1|0.25|ENSG00000144285|chr2:166037985-166037986|-/A|frameshift_variant;SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant;ENST00000480032.4_1_2:166152333-166226884:+|nuORF	nc|ENSG00000144285|P35498-3|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7506408691406	2	451.2531	900.491647	0.87684	0.00039567	-2.347	-0.0010591	-1.4701	-0.0006634	451.2524420624943	26.683	0.96829	26.683	26.085	27.053	0					55	19	4	0	0	0	0.14603	1	9450	9450		68.787	6.6794	1	2214000			23278	4607	15003	15063	23607	23607					0.03742078660582138
LANVKPLWAA	10	Unmodified	_LANVKPLWAA_					0	0	0		ENST00000530869.1_1_8:42614249-42623609:-|nuORF	ENST00000530869.1_1_8:42614249-42623609:-|nuORF	ENST00000530869.1_1_8:42614249-42623609:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.55010986328125	3	361.550082	1081.62842	0.48054	0.00017374	-0.27625	-9.9877E-05	0.2043	7.3863E-05	361.5500480975359	29.892	0.24788	29.892	29.839	30.087	0					11	6	3	0	0	0	0.44601	1	10727	10727		51.193	9.7661	1	425880			23279	10431	15004	15064	23608	23608					0.09086612610917655
LAPDGGEGALR	11	Unmodified	_LAPDGGEGALR_					0	0	0			REV__nc|ENSG00000213999|Q02080|MEF2B	REV__nc|ENSG00000213999|Q02080|MEF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.2781372070312	2	528.277638	1054.54072	0.52903	0.00027947	0.30347	0.00016031	0.83249	0.00043979	528.2777509777186	26.943	0.28471	26.943	26.811	27.096	0					20	9	3	0	0	0	0.25663	1	8266	8266		67.494	1.0644	1	295980	+		23280	17575	15005	15065	23609	23609					0.015633669495173308
LAPGLVSPSAN	11	Unmodified	_LAPGLVSPSAN_					0	0	0		ENST00000409293.5_2_19:1277295-1279069:+|nuORF	ENST00000409293.5_2_19:1277295-1279069:+|nuORF	ENST00000409293.5_2_19:1277295-1279069:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2855834960938	2	513.284931	1024.55531	0.53792	0.00027611	0.97723	0.0005016	1.5151	0.0007777	513.2854443777276	39.31	0.33749	39.31	39.197	39.535	0					30	18	3	0	0	0	0.51875	1	14012	14012		42.864	6.4175	1	232270			23281	9296	15006	15066	23610	23610					0.04401439097682669
LAPGQVPN	8	Unmodified	_LAPGQVPN_					0	0	0		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1;ENST00000512983.5_1_4:156617950-156632415:+|nuORF	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	398.22186279296875	2	398.221603	794.428653	0.18575	7.3971E-05	-0.45705	-0.00018201	-0.2713	-0.00010804	398.2213577335767	23.318	0.32403	23.318	23.218	23.542	0					18	7	4	0	0	0	0.4434	1	7087	7087		65.897	0.094285	1	2238300			23282	5658	15007	15067	23611	23611					0.023215576631855583
LAPHSSKRR	9	Unmodified	_LAPHSSKRR_					0	0	0		ENST00000426250.3_1_12:72665898-72666905:-|nuORF	ENST00000426250.3_1_12:72665898-72666905:-|nuORF	ENST00000426250.3_1_12:72665898-72666905:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.2095947265625	3	351.20883	1050.60466	1.4588	0.00051236	0.86804	0.00030486	2.3269	0.00081722	351.209129308473	23.626	0.26419	23.626	23.467	23.732	0					10	5	3	0	0	0	0.50461	1	8048	8048		24.519	0	1	1949100			23283	9444	15008	15068	23612	23612					0.08138191897114666
LAPKGLARAA	10	Unmodified	_LAPKGLARAA_					0	0	0			REV__ENST00000259883.3_1_6:28249363-28249588:+|nuORF	REV__ENST00000259883.3_1_6:28249363-28249588:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	323.20587158203125	3	323.206426	966.597449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.262	1	54.262	53.762	54.762	0								0	0	0	0.4201	1	19707	19707		12.207	1.9414	1		+		23284	18007	15009	15069	23613	23613					0.11281459296696994
LAPLRGVSSAP	11	Unmodified	_LAPLRGVSSAP_					0	0	0		ENST00000569248.5_1_16:730510-731029:+|nuORF	ENST00000569248.5_1_16:730510-731029:+|nuORF	ENST00000569248.5_1_16:730510-731029:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.3164672851562	2	534.314023	1066.61349	3.3812	0.0018066	1.4463	0.00077276	4.8275	0.0025794	534.314754749494	44.747	0.11074	44.747	44.677	44.788	0					7	5	2	0	0	0	0.70609	1	17927	17927		27.047	0.3544	1	33150			23285	10780	15010	15070	23614	23614					0.08285120742948493
LAPLSWLCS	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LAPLSWLCS_					1	0	0		ENST00000264638.8_1_17:40851006-40851270:+|nuORF	ENST00000264638.8_1_17:40851006-40851270:+|nuORF	ENST00000264638.8_1_17:40851006-40851270:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2669677734375	2	516.265153	1030.51575	4.5909	0.0023701	0.12369	6.3857E-05	4.7146	0.002434	516.2651434215054	23.681	0.18607	23.681	23.598	23.784	0					11	6	3	0	0	0	0.35045	1	7142	7142		45.952	45.952	1	191120			23286	8331	15011	15071	23615	23615					0.0017159582257590955
LAPNFEQFH	9	Unmodified	_LAPNFEQFH_					0	0	0			REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7689819335938	2	551.769448	1101.52434	0.58775	0.0003243	-2.2455	-0.001239	-1.6577	-0.00091469	551.7680490501265	12.794	0.12603	12.794	12.711	12.837	0					5	3	2	0	0	0	0.53083	1	2777	2777		29.15	3.6994	1	288900	+		23287	12973	15012	15072	23616	23616					-0.022357142165674304
LAPPGAGVAVH	11	Unmodified	_LAPPGAGVAVH_					0	0	0		nc|ENSG00000125813|P15863-2|PAX1;ENSG00000125813|ENST00000613128|PAX1;nc|ENSG00000125813|P15863-3|PAX1;nc|ENSG00000125813|P15863|PAX1	nc|ENSG00000125813|P15863-2|PAX1	nc|ENSG00000125813|P15863-2|PAX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.19073486328125	3	330.190665	987.550165	0.54553	0.00018013	-0.91318	-0.00030152	-0.36765	-0.00012139	330.1905185449788	22.022	0.80872	22.022	21.592	22.4	0					27	16	2	0	0	0	0.70609	1	7223	7223		27.047	0.3544	1	163860			23288	3438	15013	15073	23617	23617					0.05589180025708629
LAPSRGSMTTY	11	Oxidation (M)	_LAPSRGSM(Oxidation (M))TTY_		LAPSRGSM(1)TTY		LAPSRGSM(96)TTY	0	0	1			REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2900390625	2	600.289888	1198.56522	0.97964	0.00058807	-0.57973	-0.000348	0.39991	0.00024006	600.2894805472325	38.143	3.2289	38.143	38.012	41.241	0					305	114	6	0	0	0	0.074075	6	15673	14911;15212;15363;15673;16014;16126		96.034	31.826	1	32392000	+		23289	16928	15014	15074	23618;23619;23620;23621;23622;23623	23621		649			-0.026117409592416152
LAPSRGSMTTY	11	Oxidation (M)	_LAPSRGSM(Oxidation (M))TTY_		LAPSRGSM(1)TTY		LAPSRGSM(49)TTY	0	0	1			REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2905883789062	2	600.289888	1198.56522	2.1069	0.0012648	-1.0705	-0.00064262	1.0364	0.00062213	600.2892169197556	47.079	0.96036	47.079	46.496	47.456	0					92	46	3	0	0	0	0.44025	1	18909	18909		48.602	21.554	1	134680	+		23290	16928	15014	15074	23624	23624		649			-0.026117409592416152
LAPTHLGS	8	Unmodified	_LAPTHLGS_					0	0	0		ENST00000533676.5_1_11:61644904-61645258:-|nuORF	ENST00000533676.5_1_11:61644904-61645258:-|nuORF	ENST00000533676.5_1_11:61644904-61645258:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	398.2216491699219	2	398.221603	794.428653	-0.14286	-5.6891E-05	-0.17929	-7.1399E-05	-0.32216	-0.00012829	398.2215213588928	23.347	0.37108	23.347	23.203	23.574	0					22	8	4	0	0	0	0.64096	1	7080	7080		42.474	3.453	1	6037800			23291	10463	15015	15075	23625	23625					0.02321557663196927
LAPVRQQEL	9	Unmodified	_LAPVRQQEL_					0	0	0		nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1	nc|ENSG00000163346|Q96AQ6-2|PBXIP1	nc|ENSG00000163346|Q96AQ6-2|PBXIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.3067626953125	2	527.306198	1052.59784	1.7568	0.00092635	-1.4366	-0.00075751	0.32019	0.00016884	527.3053351327347	27.756	0.31324	27.756	27.601	27.915	0					13	6	3	0	0	0	0.28897	1	10106	10106		51.193	1.7511	1	640610			23292	5545	15016	15076	23626	23626					0.07364834225904815
LAQAQNFTL	9	Unmodified	_LAQAQNFTL_					0	0	0		nc|ENSG00000099957|O15547-2|P2RX6;ENSG00000099957|ENST00000413302|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2733154296875	2	503.271824	1004.5291	-0.45195	-0.00022745	3.2689	0.0016451	2.8169	0.0014177	503.27350809076546	23.789	0.16279	23.789	23.683	23.846	0					7	3	3	0	0	0	0.33044	1	8131	8131		47.657	1.6851	1	195240			23293	1953	15017	15077	23627	23627					0.027011699261947797
LAQELQAV	8	Unmodified	_LAQELQAV_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.2476501464844	2	436.247818	870.481082	0.23111	0.00010082	-0.62677	-0.00027343	-0.39565	-0.0001726	436.24755951413	23.505	0.38917	23.505	23.372	23.761	0					27	13	3	0	0	0	0.28427	1	6781	6781		87.754	10.437	1	358030	+		23294	14609	15018	15078	23628	23628					0.04066096006135922
LAQFKGNG	8	Unmodified	_LAQFKGNG_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3|VWA5B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.7286682128906	2	417.727052	833.439552	-1.3705	-0.00057248	3.8038	0.001589	2.4334	0.0010165	417.729225919387	24.34	0.13316	24.34	24.249	24.382	0					11	4	4	0	0	0	0.57802	1	7445	7445		52.299	0	1	278220	+		23295	21085	15019	15079	23629	23629					0.0161696003748375
LAQKLAEAG	9	Unmodified	_LAQKLAEAG_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7608642578125	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.884	1	13.884	13.384	14.384	0								0	0	0	0.19749	1	3261	3261		51.335	3.6781	1				23296	1720	15020	15080	23630	23630					0.053857848974644185
LAQKNREEL	9	Unmodified	_LAQKNREEL_					0	0	0		CON__P05784;ENST00000515347.2_1_5:79584647-79585058:+|nuORF	CON__P05784	CON__P05784	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8069458007812	2	550.806562	1099.59857	1.5248	0.00083985	-0.57006	-0.00031399	0.9547	0.00052586	550.8062889412782	22.36	0.26303	22.36	22.279	22.542	0					17	7	4	0	0	0	0.17854	1	6303	6303		64.207	4.2765	1	884290		+	23297	631	15021	15081	23631	23631					0.052756288749378655
LAQKPDLI	8	Unmodified	_LAQKPDLI_					0	0	0			REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.27386474609375	2	449.273835	896.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.656	1	33.656	33.156	34.156	0								0	0	0	1.7419	1	11835	11835		40.573	0	1		+		23298	15530	15022	15082	23632	23632					0.08071259419898524
LAQKREEA	8	Unmodified	_LAQKREEA_					0	0	0			REV__nc|ENSG00000129195|Q9BSJ6|PIMREG	REV__nc|ENSG00000129195|Q9BSJ6|PIMREG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7611389160156	2	472.761623	943.508694	-2.4692	-0.0011674	2.0387	0.00096382	-0.43052	-0.00020353	472.762211398695	22.37	0.14574	22.37	22.276	22.422	0					5	3	2	0	0	0	0.51384	1	6664	6664		58.782	5.4305	1	79756	+		23299	21014	15023	15083	23633	23633					0.034679992663768644
LAQKREEA	8	Unmodified	_LAQKREEA_					0	0	0			REV__nc|ENSG00000129195|Q9BSJ6|PIMREG	REV__nc|ENSG00000129195|Q9BSJ6|PIMREG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7613525390625	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.543	1	22.543	22.043	23.043	0								0	0	0	1.7419	1	7513	7513		51.335	0	1		+		23300	21014	15023	15083	23634	23634					0.034679992663768644
LAQLYMWL	8	Oxidation (M)	_LAQLYM(Oxidation (M))WL_		LAQLYM(1)WL		LAQLYM(75)WL	0	0	1			REV__HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant	REV__HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2758178710938	2	527.275521	1052.53649	0.10411	5.4895E-05	0.28401	0.00014975	0.38812	0.00020465	527.2756851087574	18.206	0.17968	18.206	18.114	18.294	0					9	4	3	0	0	0	0.36926	1	5289	5289		74.517	12.409	1	935650	+		23301	15368	15024	15084	23635	23635		591			0.012321862022645291
LAQMVPNDTI	10	Unmodified	_LAQMVPNDTI_					0	0	0		tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2840576171875	2	551.284074	1100.5536	0.14258	7.8601E-05	0.35553	0.000196	0.49811	0.0002746	551.2841995360242	28.079	0.24425	28.079	27.98	28.224	0					9	5	2	0	0	0	0.58114	1	10237	10237		38.754	8.25	1	116640			23302	23044	15025	15085	23636	23636					0.007340620174090873
LAQNFNEVM	9	Unmodified	_LAQNFNEVM_					0	0	0			REV__nc|ENSG00000135441|P78537-2|BLOC1S1	REV__nc|ENSG00000135441|P78537-2|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.255615234375	2	533.255317	1064.49608	0.71579	0.0003817	-0.0039453	-2.1038E-06	0.71184	0.00037959	533.2551177252251	38.521	0.25633	38.521	38.404	38.661	0					9	5	2	0	0	0	0.39215	1	15152	15152		42.396	8.2236	1	162480	+		23303	14800	15026	15086	23637	23637					-0.033587801881594714
LAQPTACGP	9	Unmodified	_LAQPTACGP_					0	0	0			REV__ENST00000485901.1_1_6:32974617-32975137:-|nuORF	REV__ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2125244140625	2	429.212921	856.411288	-0.43261	-0.00018568	-0.087425	-3.7524E-05	-0.52003	-0.0002232	429.2127756469256	36.487	0.21703	36.487	36.379	36.596	0					7	4	2	0	0	0	0.53083	1	14195	14195		29.15	2.3535	1	168650	+		23304	19660	15027	15087	23638	23638					-0.022661059341317014
LAQQKVEK	8	Unmodified	_LAQQKVEK_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;ENST00000494389.5_1_2:197559796-197594150:+|nuORF	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2829284667969	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.677	1	14.677	14.177	15.177	0								0	0	0	1.7419	1	3153	3153		104.75	8.5561	1				23305	4613	15028	15088	23639	23639					0.0762576030585933
LAQRSLYK	8	Unmodified	_LAQRSLYK_					0	0	0		nc|ENSG00000197016|Q6ECI4-2|ZNF470;ENSG00000197016|ENST00000330619|ZNF470	nc|ENSG00000197016|Q6ECI4-2|ZNF470	nc|ENSG00000197016|Q6ECI4-2|ZNF470	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	326.8625183105469	3	326.862548	977.565815	1.5153	0.0004953	-0.96527	-0.00031551	0.55004	0.00017979	326.86242725205216	23.804	0.26861	23.804	23.695	23.963	0					11	5	3	0	0	0	0.63077	1	8264	8264		44.117	6.9577	1	566960			23306	7415	15029	15089	23640	23640					0.07613466542750302
LAREVTSTD	9	Unmodified	_LAREVTSTD_					0	0	0			REV__ENST00000265245.9_1_3:194362482-194362794:-|nuORF	REV__ENST00000265245.9_1_3:194362482-194362794:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	331.17242431640625	3	331.173339	990.498189	-0.66761	-0.00022109	-2.3675	-0.00078404	-3.0351	-0.0010051	331.1726520639875	23.068	0.25409	23.068	22.998	23.252	0					11	8	3	0	0	0	0.56424	1	6882	6882		25.574	0.12388	1	265810	+		23307	18074	15030	15090	23641	23641					0.0025597182128649365
LARFREAP	8	Unmodified	_LARFREAP_					0	0	0			REV__ENST00000379287.3_1_6:13487499-13487736:-|nuORF	REV__ENST00000379287.3_1_6:13487499-13487736:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.273681640625	2	480.274701	958.534849	-1.3851	-0.00066524	-0.54887	-0.00026361	-1.934	-0.00092885	480.27438744676505	31.794	0.52528	31.794	31.552	32.077	0					48	20	3	0	0	0	0.58597	1	10545	10545		51.335	1.8939	1	523290	+		23308	18756	15031	15091	23642	23642					0.05392313228514922
LARGEVGGTE	10	Unmodified	_LARGEVGGTE_					0	0	0		ENST00000264661.3_1_17:40332898-40333183:-|nuORF	ENST00000264661.3_1_17:40332898-40333183:-|nuORF	ENST00000264661.3_1_17:40332898-40333183:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7582702636719	2	494.756538	987.498523	0.064448	3.1886E-05	2.3243	0.00115	2.3888	0.0011819	494.7575202089628	29.056	0.42797	29.056	28.923	29.351	0					18	11	2	0	0	0	0.52707	1	9718	9718		42.396	3.59	1	202300			23309	8333	15032	15092	23643	23643					0.004273915411545204
LARHHPINP	9	Unmodified	_LARHHPINP_					0	0	0			REV__ENST00000558619.5_1_15:91073804-91136884:+|nuORF	REV__ENST00000558619.5_1_15:91073804-91136884:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.201171875	3	352.201675	1053.5832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.961	1	16.961	16.461	17.461	0								0	0	0	0.35377	1	4952	4952		24.519	0.99649	1		+		23310	20270	15033	15093	23644	23644					0.05854806868410378
LARILTAY	8	Unmodified	_LARILTAY_					0	0	0		GDPD4|p.N396Tfs*5|2|0.24|ENSG00000178795|chr11:77243748-77243748|T/-|frameshift_variant;ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4	GDPD4|p.N396Tfs*5|2|0.24|ENSG00000178795|chr11:77243748-77243748|T/-|frameshift_variant	GDPD4|p.N396Tfs*5|2|0.24|ENSG00000178795|chr11:77243748-77243748|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.78131103515625	2	460.781828	919.549102	-0.44233	-0.00020382	-0.11962	-5.5118E-05	-0.56195	-0.00025893	460.7817627510848	32.839	0.7716	32.839	32.318	33.09	0					49	32	2	0	0	0	0.65276	1	10686	10686		40.573	0	1	68131			23311	6729	15034	15094	23645	23645					0.0861096565678281
LARKPQVQA	9	Unmodified	_LARKPQVQA_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.3115539550781	2	505.808908	1009.60326	-0.044007	-2.2259E-05	-0.56289	-0.00028472	-0.6069	-0.00030698	506.31144158066496	38.871	0.19712	38.871	38.751	38.948	0					13	7	2	0	0	0	0.53083	1	14766	14766		29.15	1.0681	1	59874	+		23312	14132	15035	15095	23646	23646					0.098845578083683
LARLLENK	8	Unmodified	_LARLLENK_					0	0	0		ZBED9|p.D658*|1|0.02|ENSG00000232040|chr6:28574734-28574735|-/G|frameshift_variant;ZBED9|p.D658Vfs*16|1|0.04|ENSG00000232040|chr6:28574732-28574733|-/TA|frameshift_variant;ZBED9|p.V698Cfs*9|1|0.24|ENSG00000232040|chr6:28573797-28573798|-/A|frameshift_variant;ZBED9|p.S934Qfs*17|1|0.4|ENSG00000232040|chr6:28573089-28573089|A/-|frameshift_variant;ZBED9|p.V1067Sfs*7|1|0.08|ENSG00000232040|chr6:28572690-28572691|-/T|frameshift_variant;ZBED9|p.F1112Lfs*29|1|0.25|ENSG00000232040|chr6:28572553-28572553|A/-|frameshift_variant;ENSG00000232040|ENST00000452236|SCAND3	ZBED9|p.D658*|1|0.02|ENSG00000232040|chr6:28574734-28574735|-/G|frameshift_variant	ZBED9|p.D658*|1|0.02|ENSG00000232040|chr6:28574734-28574735|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7978515625	2	478.798009	955.581465	-0.029367	-1.4061E-05	-1.3021	-0.00062346	-1.3315	-0.00063753	478.7976370762266	20.987	0.19891	20.987	20.868	21.067	0					9	5	2	0	0	0	0.77246	1	5733	5733		24.203	0	1	59387			23313	7895	15036	15096	23647	23647					0.10189753059796658
LARLRSVF	8	Unmodified	_LARLRSVF_					0	0	0		ENSG00000165105|ENST00000376447|RASEF;nc|ENSG00000165105|Q8IZ41-2|RASEF	ENSG00000165105|ENST00000376447|RASEF;nc|ENSG00000165105|Q8IZ41-2|RASEF	ENSG00000165105|ENST00000376447|RASEF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2986145019531	2	481.300719	960.586885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.263	1	34.263	33.763	34.763	0								0	0	0	1.7419	1	13193	13193		35.618	2.1027	1				23314	5758;11621	15037	15097	23648	23648					0.1050147664227552
LARLTRRG	8	Unmodified	_LARLTRRG_					0	0	0			REV__ENST00000314222.4_1_11:2949785-2950526:-|nuORF	REV__ENST00000314222.4_1_11:2949785-2950526:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.802490234375	2	471.801417	941.588282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.218	1	24.218	23.718	24.718	0								0	0	0	1.7419	1	8449	8449		24.519	1.4767	1		+		23315	18287	15038	15098	23649	23649					0.11515110731045297
LARLTSLF	8	Unmodified	_LARLTSLF_					0	0	0			REV__MED1|p.N146Ifs*24|1|0.3|ENSG00000125686|chr17:39434312-39434312|T/-|frameshift_variant	REV__MED1|p.N146Ifs*24|1|0.3|ENSG00000125686|chr17:39434312-39434312|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.7812194824219	2	460.781828	919.549102	-0.87071	-0.00040121	0.18657	8.5966E-05	-0.68414	-0.00031524	460.78189025586295	32.933	0.98491	32.933	32.231	33.216	0					54	40	2	0	0	0	0.64096	1	10853	10853		42.474	1.9018	1	100150	+		23316	20873	15039	15099	23650	23650					0.08610965656794178
LARPNIQLE	9	Unmodified	_LARPNIQLE_					0	0	0			REV__WDR7|p.L1146Hfs*7|1|0.04|ENSG00000091157|chr18:56880075-56880076|-/ATAGAATCTCAACT|frameshift_variant	REV__WDR7|p.L1146Hfs*7|1|0.04|ENSG00000091157|chr18:56880075-56880076|-/ATAGAATCTCAACT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.306640625	2	527.306198	1052.59784	0.33519	0.00017675	0.33361	0.00017591	0.6688	0.00035266	527.3064627953967	27.538	0.14924	27.538	27.442	27.591	0					8	5	2	0	0	0	0.61124	1	8785	8785		16.473	0.83134	1	106900	+		23317	13441	15040	15100	23651	23651					0.07364834225904815
LARPWPGG	8	Unmodified	_LARPWPGG_					0	0	0			REV__ENST00000524270.5_1_12:6981776-6982483:-|nuORF	REV__ENST00000524270.5_1_12:6981776-6982483:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	285.162109375	3	285.160817	852.460622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.701	1	43.701	43.201	44.201	0								0	0	0	1.7419	1	16455	16455		7.6903	0	1		+		23318	19976	15041	15101	23652	23652					0.028489701369949216
LARQLSYI	8	Unmodified	_LARQLSYI_					0	0	0			REV__UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	REV__UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.28448486328125	2	482.284734	962.554916	-0.47062	-0.00022697	-0.059684	-2.8785E-05	-0.5303	-0.00025576	482.2847296589493	35.096	0.23851	35.096	34.952	35.19	0					25	10	3	0	0	0	0.52345	1	11824	11824		57.811	0	1	605100	+		23319	15718	15042	15102	23653	23653					0.07214064168454115
LARRAQATA	9	Unmodified	_LARRAQATA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2846374511719	2	479.283057	956.551562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.933	1	35.933	35.433	36.433	0								0	0	0	0.27025	1	12831	12831		40.778	3.6191	1				23320	7354	15043	15103	23654	23654					0.07154814114448982
LARRGREAP	9	Unmodified	_LARRGREAP_					0	0	0			REV__nc|ENSG00000106003|Q8NES3-3|LFNG	REV__nc|ENSG00000106003|Q8NES3-3|LFNG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.3026733398438	2	513.301781	1024.58901	3.162	0.001623	0.028363	1.4559E-05	3.1903	0.0016376	513.3017804481431	42.781	0.71381	42.781	42.433	43.146	0					31	20	2	0	0	0	0.53083	1	17026	17026		29.15	2.4566	1	126780	+		23321	13807	15044	15104	23655	23655					0.07769905380087039
LARRLRDP	8	Unmodified	_LARRLRDP_					0	0	0		ENST00000573965.1_3_16:2933286-2946490:+|nuORF;ENST00000396958.7_2_16:2933286-2946389:+|nuORF	ENST00000573965.1_3_16:2933286-2946490:+|nuORF	ENST00000573965.1_3_16:2933286-2946490:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.80828857421875	2	498.8067	995.598846	2.9165	0.0014548	-0.36138	-0.00018026	2.5551	0.0012745	498.8066254199405	40.042	0.71766	40.042	39.768	40.486	0					26	16	2	0	0	0	0.6282	1	15921	15921		44.531	44.531	1	134210			23322	9211	15045	15105	23656	23656					0.1008709338547078
LARRVRSD	8	Unmodified	_LARRVRSD_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENSG00000176624|ENST00000406189|MEX3C	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7896728515625	2	486.788507	971.562461	2.5379	0.0012354	-0.80768	-0.00039317	1.7303	0.00084227	486.78817809747494	37.442	0.55545	37.442	37.04	37.596	0					32	11	4	0	0	0	0.60719	1	14511	14511		47.916	1.9434	1	3703700			23323	6616	15046	15106	23657	23657					0.07554216488756538
LARVCPQRP	9	Unmodified	_LARVCPQRP_					0	0	0		ENST00000423084.1_1_7:76178841-76180825:+|nuORF;ENST00000418663.5_1_7:76178841-76179072:+|nuORF	ENST00000423084.1_1_7:76178841-76180825:+|nuORF	ENST00000423084.1_1_7:76178841-76180825:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.1986389160156	3	347.199166	1038.57567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.291	1	41.291	40.791	41.791	0								0	0	0	0.37821	1	13730	13730		12.812	1.1758	1				23324	9382	15047	15107	23658	23658					0.057923312764842194
LARVLRPR	8	Unmodified	_LARVLRPR_					0	0	0		ENST00000380191.8_1_10:5855216-5855492:-|nuORF	ENST00000380191.8_1_10:5855216-5855492:-|nuORF	ENST00000380191.8_1_10:5855216-5855492:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.8283996582031	2	490.827435	979.640317	2.678	0.0013144	0.14611	7.1713E-05	2.8241	0.0013861	490.8272458029349	45.917	0.17751	45.917	45.811	45.988	0					15	8	3	0	0	0	0.54629	1	18385	18385		55.504	55.504	1	198250			23325	9092	15048	15108	23659	23659					0.14968274144803217
LARWPGTE	8	Unmodified	_LARWPGTE_					0	0	0			REV__ENST00000564063.1_1_1:108742725-108743325:+|nuORF	REV__ENST00000564063.1_1_1:108742725-108743325:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2455749511719	2	465.245609	928.476666	0.69109	0.00032153	-1.3636	-0.0006344	-0.67249	-0.00031287	465.2449797175732	30.569	0.20593	30.569	30.474	30.68	0					10	4	3	0	0	0	0.49887	1	11321	11321		60.294	2.4827	1	544220	+		23326	20321	15049	15109	23660	23660					0.009566315832330474
LARYAGPCR	9	Unmodified	_LARYAGPCR_					0	0	0			REV__ENSG00000174939|ENST00000308748|ASPHD1	REV__ENSG00000174939|ENST00000308748|ASPHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.76605224609375	2	503.766186	1005.51782	-0.85896	-0.00043272	1.5128	0.0007621	0.65385	0.00032939	503.7669280376988	27.158	0.15111	27.158	27.102	27.253	0					7	5	2	0	0	0	0.24095	1	8633	8633		50.025	3.2581	1	78789	+		23327	16591	15050	15110	23661	23661					0.015280693510590027
LASALGIKA	9	Unmodified	_LASALGIKA_					0	0	0			REV__ENSG00000145113|ENST00000463781|MUC4	REV__ENSG00000145113|ENST00000463781|MUC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.26873779296875	2	422.268553	842.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.647	1	29.647	29.147	30.147	0								0	0	0	0.13522	1	9671	9671		63.306	0	1		+		23328	15257	15051	15111	23662	23662					0.09499276765461673
LASEYSKR	8	Unmodified	_LASEYSKR_					0	0	0			REV__CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant	REV__CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.25592041015625	2	477.256174	952.497795	-0.40513	-0.00019335	0.33753	0.00016109	-0.0676	-3.2262E-05	477.25612333685416	24.737	0.16686	24.737	24.628	24.794	0					5	3	2	0	0	0	0.72381	1	8706	8706		30.504	0	1	150600	+		23329	12361	15052	15112	23663	23663					0.019645968920940504
LASGELLVR	9	Unmodified	_LASGELLVR_					0	0	0			REV__sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	REV__sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2892150878906	2	479.290017	956.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.256	1	19.256	18.756	19.756	0								0	0	0	0.27025	1	5181	5181		40.778	7.9657	1		+		23330	21576	15053	15113	23664	23664					0.0854604682289164
LASIKEQYR	9	Unmodified	_LASIKEQYR_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.3118896484375	2	554.31148	1106.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.066	1	23.066	22.566	23.566	0								0	0	0	0.1836	1	7897	7897		53.351	9.2347	1		+		23331	16499	15054	15114	23665	23665					0.059368168803075605
LASIWCYQ	8	Unmodified	_LASIWCYQ_					0	0	0		ENST00000589917.1_1_18:44483500-44500057:-|nuORF	ENST00000589917.1_1_18:44483500-44500057:-|nuORF	ENST00000589917.1_1_18:44483500-44500057:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.23699951171875	2	492.236396	982.458238	-0.073132	-3.5998E-05	2.6005	0.0012801	2.5274	0.0012441	492.2382231130306	32.921	0.1621	32.921	32.827	32.989	0					12	6	3	0	0	0	0.60719	1	10674	10674		47.916	3.7988	1	79107			23332	10943	15055	15115	23666	23666					-0.033692463829765984
LASKCLTQIS	10	Unmodified	_LASKCLTQIS_					0	0	0			REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2987670898438	2	532.294442	1062.57433	3.4083	0.0018142	0.17005	9.0518E-05	3.5783	0.0019047	532.296944900906	32.562	0.26468	32.562	32.489	32.754	0					13	5	4	0	0	0	0.09653	1	12297	12297		96.034	2.8904	1	788280	+		23333	17467	15056	15116	23667	23667					0.04554652397064274
LASKEIHQF	9	Unmodified	_LASKEIHQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7941284179688	2	536.792924	1071.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.607	1	24.607	24.107	25.107	0								0	0	0	0.22075	1	7288	7288		47.96	1.1931	1				23334	2899	15057	15117	23668	23668					0.03837145334568959
LASKEIHQF	9	Unmodified	_LASKEIHQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7935180664062	2	536.792924	1071.57129	1.281	0.00068763	-0.016783	-9.009E-06	1.2642	0.00067862	536.7929550228768	24.865	0.16164	24.865	24.762	24.924	0					5	3	2	0	0	0	0.12834	1	8743	8743		72.879	6.9818	1	303370			23335	2899	15057	15117	23669	23669					0.03837145334568959
LASKEIHQF	9	Unmodified	_LASKEIHQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7930908203125	2	536.792924	1071.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.801	1	24.801	24.301	25.301	0								0	0	0	0.0019965	1	8601	8601		120.87	41.156	1				23336	2899	15057	15117	23670	23670					0.03837145334568959
LASKMAFR	8	Unmodified	_LASKMAFR_					0	0	0			REV__ENST00000382874.6_1_13:20579374-20580544:+|nuORF	REV__ENST00000382874.6_1_13:20579374-20580544:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.26025390625	2	462.260205	922.505857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.343	1	28.343	27.843	28.843	0								0	0	0	1.7419	1	9129	9129		37.159	3.6435	1		+		23337	18799	15058	15118	23671	23671					0.041504526078711024
LASKNQSLS	9	Unmodified	_LASKNQSLS_					0	0	0			REV__ENSG00000160613|ENST00000320934|PCSK7	REV__ENSG00000160613|ENST00000320934|PCSK7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2615051269531	2	474.261456	946.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.914	1	26.914	26.414	27.414	0								0	0	0	0.1633	1	9342	9342		56.721	1.9447	1		+		23338	15758	15059	15119	23672	23672					0.03296579546531575
LASKYPDFKQ	10	Unmodified	_LASKYPDFKQ_					0	0	0		ENST00000577148.1_1_17:2380968-2405559:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16;METTL16|p.R241Kfs*6|1|0.45|ENSG00000127804|chr17:2464214-2464215|-/T|frameshift_variant;METTL16|p.I349Ffs*5|1|0.13|ENSG00000127804|chr17:2420748-2420748|T/-|frameshift_variant;ENSG00000127804|ENST00000263092|METTL16	ENST00000577148.1_1_17:2380968-2405559:-|nuORF	ENST00000577148.1_1_17:2380968-2405559:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.88311767578125	3	399.548518	1195.62372	-0.61724	-0.00024662	1.3024	0.00052038	0.68519	0.00027376	399.88323567635086	21.848	0.56527	21.848	21.738	22.304	0					21	11	2	0	0	0	0.61238	1	7192	7192		32.751	0	1	334660			23339	3516	15060	15120	23673	23673					0.033736836775233314
LASLGLQLE	9	Unmodified	_LASLGLQLE_					0	0	0		nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1;ENST00000486060.1_1_6:31112443-31112875:-|nuORF;ENST00000509552.5_1_6:31112443-31124902:-|nuORF	nc|ENSG00000204536|Q8TD31|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2755432128906	2	472.276575	942.538597	-0.022895	-1.0813E-05	-1.1526	-0.00054434	-1.1755	-0.00055515	472.27611305146786	32.118	0.084515	32.118	32.046	32.13	0					6	3	2	0	0	0	0.17854	1	10352	10352		64.207	3.2353	1	78921			23340	7708	15061	15121	23674	23674					0.0650293821172454
LASLLFSGQ	9	Unmodified	_LASLLFSGQ_					0	0	0		nc|ENSG00000185739|Q86TD4-1|SRL;ENSG00000185739|ENST00000399609|SRL	nc|ENSG00000185739|Q86TD4-1|SRL	nc|ENSG00000185739|Q86TD4-1|SRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2630310058594	2	468.263468	934.512382	-2.1625	-0.0010126	1.8146	0.0008497	-0.34792	-0.00016292	468.2641779775886	37.2	0.23632	37.2	37.088	37.324	0					17	12	2	0	0	0	0.41113	1	13307	13307		40.778	0	1	121760			23341	7102	15062	15122	23675	23675					0.04250669040243338
LASLLSPGSV	10	Unmodified	_LASLLSPGSV_					0	0	0		ENST00000498749.1_1_2:73114531-73115553:+|nuORF;ENSG00000116096|ENST00000234454|SPR	ENST00000498749.1_1_2:73114531-73115553:+|nuORF	ENST00000498749.1_1_2:73114531-73115553:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.27642822265625	2	472.276575	942.538597	-0.1231	-5.8139E-05	-0.59647	-0.0002817	-0.71957	-0.00033984	472.2763878654167	26.24	0.3597	26.24	26.084	26.443	0					13	7	3	0	0	0	0.46215	1	9378	9378		49.442	7.0454	1	150080			23342	2960	15063	15123	23676	23676					0.0650293821172454
LASLLSPGSV	10	Unmodified	_LASLLSPGSV_					0	0	0		ENST00000498749.1_1_2:73114531-73115553:+|nuORF;ENSG00000116096|ENST00000234454|SPR	ENST00000498749.1_1_2:73114531-73115553:+|nuORF	ENST00000498749.1_1_2:73114531-73115553:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.27593994140625	2	472.276575	942.538597	-0.1622	-7.6602E-05	-0.24916	-0.00011767	-0.41136	-0.00019427	472.2765168934433	26.075	0.58105	26.075	25.789	26.37	0					23	11	3	0	0	0	0.54197	1	8306	8306		40.778	3.6191	1	101280			23343	2960	15063	15123	23677	23677					0.0650293821172454
LASLLSPGSV	10	Unmodified	_LASLLSPGSV_					0	0	0		ENST00000498749.1_1_2:73114531-73115553:+|nuORF;ENSG00000116096|ENST00000234454|SPR	ENST00000498749.1_1_2:73114531-73115553:+|nuORF	ENST00000498749.1_1_2:73114531-73115553:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2762145996094	2	472.276575	942.538597	-0.56733	-0.00026794	-0.27678	-0.00013072	-0.84411	-0.00039865	472.27643689308314	26.165	0.82363	26.165	25.898	26.722	0					48	16	4	0	0	0	0.28723	1	9194	9194		68.787	6.6794	1	1527700			23344	2960	15063	15123	23678	23678					0.0650293821172454
LASLLTLTTK	10	Unmodified	_LASLLTLTTK_					0	0	0			REV__ENST00000360057.7_1_7:144320275-144380050:-|nuORF	REV__ENST00000360057.7_1_7:144320275-144380050:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.2267150878906	3	354.225264	1059.65396	1.4425	0.00051098	2.3208	0.0008221	3.7634	0.0013331	354.2261934583295	16.372	0.36623	16.372	16.263	16.63	0					14	7	4	0	0	0	0.61238	1	4680	4680		32.751	4.669	1	658460	+		23345	18553	15064	15124	23679	23679					0.1265204234268822
LASMLRTNASD	11	Unmodified	_LASMLRTNASD_					0	0	0			REV__ENST00000433130.2_1_1:178439834-178442371:+|nuORF	REV__ENST00000433130.2_1_1:178439834-178442371:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	393.867919921875	3	393.53265	1177.57612	-0.16104	-6.3376E-05	1.1423	0.00044954	0.98128	0.00038617	393.5328492241194	28.057	0.20702	28.057	27.952	28.159	0					8	5	2	0	0	0	0.69004	1	9263	9263		28.577	4.0575	1	64695	+		23346	13230	15065	15125	23680	23680					-0.005563385849882252
LASRAVDSLMK	11	Unmodified	_LASRAVDSLMK_					0	0	0		ENST00000340648.5_1_21:45114371-45114962:+|nuORF	ENST00000340648.5_1_21:45114371-45114962:+|nuORF	ENST00000340648.5_1_21:45114371-45114962:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.5570068359375	3	397.556907	1189.64889	0.91716	0.00036462	-0.48275	-0.00019192	0.43441	0.0001727	397.55669410956074	34.919	0.35487	34.919	34.848	35.203	0					12	9	2	0	0	0	0.69983	1	13043	13043		27.644	0.95101	1	270470			23347	8731	15066	15126	23681	23681					0.061654152084201996
LASRVLVPG	9	Unmodified	_LASRVLVPG_					0	0	0			REV__ENST00000566749.5_1_16:30094185-30096380:+|nuORF	REV__ENST00000566749.5_1_16:30094185-30096380:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.28692626953125	2	456.287277	910.560001	0.72159	0.00032925	-1.5294	-0.00069782	-0.80777	-0.00036857	456.2865566239655	32.409	0.54506	32.409	32.225	32.77	0					23	13	3	0	0	0	0.16002	1	12328	12328		66.429	3.123	1	398390	+		23348	20349	15067	15127	23682	23682					0.1011436803109973
LASSFARR	8	Unmodified	_LASSFARR_					0	0	0		ENST00000563117.5_1_16:20817227-20817782:-|nuORF;ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	ENST00000563117.5_1_16:20817227-20817782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.25775146484375	2	454.259051	906.503549	-2.6241	-0.001192	-0.0043305	-1.9672E-06	-2.6284	-0.001194	454.258928228449	18.479	0.11114	18.479	18.428	18.539	0					5	3	2	0	0	0	0.64096	1	4835	4835		42.474	1.9018	1	61225			23349	10731	15068	15128	23683	23683					0.046557401944255616
LASSGRSLKA	10	Unmodified	_LASSGRSLKA_					0	0	0			REV__ENST00000473006.1_1_6:3231803-3231938:-|nuORF	REV__ENST00000473006.1_1_6:3231803-3231938:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.29278564453125	2	495.290548	988.566543	2.8351	0.0014042	1.8746	0.00092846	4.7096	0.0023326	495.29159609174724	19.566	0.1639	19.566	19.459	19.623	0					7	3	3	0	0	0	0.41335	1	6085	6085		54.776	3.5836	1	779340	+		23350	19499	15069	15129	23684	23684					0.07180261191797399
LASSLKTQ	8	Unmodified	_LASSLKTQ_					0	0	0		tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1	tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1	tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.2481689453125	2	424.247818	846.481082	1.2243	0.00051942	-0.95935	-0.000407	0.26498	0.00011242	424.24746234484627	19.05	0.10724	19.05	18.979	19.086	0					6	3	2	0	0	0	0.64144	1	4846	4846		42.396	0	1	73136			23351	22598	15070	15130	23685	23685					0.051700960061339174
LASSQARP	8	Unmodified	_LASSQARP_					0	0	0			REV__ENST00000215829.7_1_22:24951687-24951834:+|nuORF	REV__ENST00000215829.7_1_22:24951687-24951834:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.2297058105469	2	415.229959	828.445365	1.0396	0.00043168	-1.3647	-0.00056665	-0.32503	-0.00013496	415.229329139206	28.606	0.29364	28.606	28.486	28.78	0					11	7	2	0	0	0	0.59773	1	10140	10140		49.442	0	1	276630	+		23352	17875	15071	15131	23686	23686					0.024280585491396778
LASSTGSVL	9	Unmodified	_LASSTGSVL_					0	0	0			REV__ENSG00000177673|ENST00000313965|TEX44	REV__ENSG00000177673|ENST00000313965|TEX44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.7316589355469	2	417.732	833.449448	0.068029	2.8418E-05	-0.38926	-0.00016261	-0.32123	-0.00013419	417.7317801788523	27.722	0.2631	27.722	27.617	27.88	0					12	5	3	0	0	0	0.11118	1	10063	10063		76.847	2.8719	1	784390	+		23353	16705	15072	15132	23687	23687					0.026061032522079586
LASVDTDES	9	Unmodified	_LASVDTDES_					0	0	0			REV__ENST00000393077.2_1_10:114575125-114575158:+|nuORF	REV__ENST00000393077.2_1_10:114575125-114575158:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7140808105469	2	468.711462	935.408371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.853	1	46.853	46.353	47.353	0								0	0	0	0.35899	1	17959	17959		23.042	0	1		+		23354	18841	15073	15133	23688	23688					-0.06191702577939395
LASVSPSVAL	10	Unmodified	_LASVSPSVAL_					0	0	0		nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENSG00000134686|ENST00000683057|PHC2;PHC2|p.F605Lfs*128|1|0.21|ENSG00000134686|chr1:33332348-33332349|-/AACCC|frameshift_variant	nc|ENSG00000134686|Q8IXK0-4|PHC2	nc|ENSG00000134686|Q8IXK0-4|PHC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.27685546875	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.361	1	36.361	35.861	36.861	0								0	0	0	0.16252	1	12322	12322		68.787	17.451	1				23355	3936	15074	15134	23689	23689					0.06502938211713172
LASVSRGPS	9	Unmodified	_LASVSRGPS_					0	0	0		ENST00000234040.8_1_2:242082343-242082406:-|nuORF	ENST00000234040.8_1_2:242082343-242082406:-|nuORF	ENST00000234040.8_1_2:242082343-242082406:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.24310302734375	2	437.243067	872.47158	0.72779	0.00031822	-1.2765	-0.00055815	-0.54872	-0.00023993	437.24251315120966	21.366	0.61312	21.366	21.112	21.725	0					27	12	5	0	0	0	0.1115	1	7061	7061		76.774	2.7994	1	6617300			23356	8208	15075	15135	23690	23690					0.030243277206295716
LASYHKRG	8	Unmodified	_LASYHKRG_					0	0	0			REV__ENST00000316407.8_2_3:113379152-113379233:-|nuORF	REV__ENST00000316407.8_2_3:113379152-113379233:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.25848388671875	2	466.259051	930.503549	-0.17907	-8.3492E-05	-1.9641	-0.00091578	-2.1432	-0.00099927	466.25847396988365	22.445	0.32913	22.445	22.216	22.545	0					11	7	2	0	0	0	0.49887	1	6654	6654		60.294	1.512	1	112570	+		23357	18306	15076	15136	23691	23691					0.03551740194427566
LATCSCLGL	9	Carbamidomethyl (C)	_LATC(Carbamidomethyl (C))SCLGL_	LATC(0.863)SC(0.137)LGL		LATC(8)SC(-8)LGL		0	1	0		ENST00000464265.5_1_21:38439600-38439633:-|nuORF	ENST00000464265.5_1_21:38439600-38439633:-|nuORF	ENST00000464265.5_1_21:38439600-38439633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2275390625	2	469.227713	936.440874	0.62299	0.00029233	-1.4967	-0.00070231	-0.87375	-0.00040999	469.2271288120455	40.115	0.18217	40.115	40.021	40.203	0					11	6	3	0	0	0	0.16524	1	15795	15795		65.803	7.0212	2	194200			23358	9768	15077	15137	23692	23692	403				-0.02988909980297194
LATDGPVVY	9	Unmodified	_LATDGPVVY_					0	0	0			REV__ENST00000489116.1_1_6:28415047-28415581:+|nuORF	REV__ENST00000489116.1_1_6:28415047-28415581:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.74774169921875	2	467.74765	933.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.16	1	41.16	40.66	41.66	0								0	0	0	0.30835	1	16186	16186		33.516	0	1		+		23359	19697	15078	15138	23693	23693					0.011346762862899595
LATDNAIDILG	11	Unmodified	_LATDNAIDILG_					0	0	0		ENSG00000006788|ENST00000252172|MYH13;MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant	ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.5366516113281	3	372.536278	1114.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.706	1	24.706	24.206	25.206	0								0	0	0	0.43372	1	7745	7745		29.551	0.38069	1				23360	989	15079	15139	23694	23694					0.034293870609417354
LATGWHPSEL	10	Unmodified	_LATGWHPSEL_					0	0	0			REV__ENST00000306910.8_1_19:58928865-58928946:+|nuORF	REV__ENST00000306910.8_1_19:58928865-58928946:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.7822875976562	2	555.782556	1109.55056	-1.03	-0.00057247	1.047	0.00058192	0.017005	9.4509E-06	555.7828104164722	23.597	0.17043	23.597	23.502	23.673	0					6	4	2	0	0	0	0.65051	1	7238	7238		16.473	0	1	111240	+		23361	18246	15080	15140	23695	23695					0.00016554954913772235
LATIEEEHNK	10	Unmodified	_LATIEEEHNK_					0	0	0			REV__CON__P19001	REV__CON__P19001	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.3019409179688	2	592.30131	1182.58807	1.5273	0.00090459	-1.3838	-0.0008196	0.14349	8.4992E-05	592.3005679352771	34.822	0.89305	34.822	34.686	35.579	0					80	25	5	0	0	0	0.56931	1	13591	13591		37.812	4.9991	1	1927700	+	+	23362	12593	15081	15141	23696	23696					0.004076014298561859
LATKAKEA	8	Unmodified	_LATKAKEA_					0	0	0			REV__ENSG00000153292|ENST00000371253|ADGRF1	REV__ENSG00000153292|ENST00000371253|ADGRF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.25030517578125	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.918	1	25.918	25.418	26.418	0								0	0	0	1.7419	1	8875	8875		35.618	0	1		+		23363	15537	15082	15142	23697	23697					0.06414399868742748
LATKDPPSM	9	Unmodified	_LATKDPPSM_					0	0	0		ENSG00000164530|ENST00000373674|PI16	ENSG00000164530|ENST00000373674|PI16	ENSG00000164530|ENST00000373674|PI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2465515136719	2	480.24696	958.479368	-0.64611	-0.00031029	-0.27916	-0.00013407	-0.92527	-0.00044436	480.24682060076884	36.888	0.31293	36.888	36.727	37.04	0					11	6	2	0	0	0	0.45358	1	14386	14386		37.159	0	1	178740			23364	5701	15083	15143	23698	23698					-0.0015328107413097314
LATLEEAL	8	Unmodified	_LATLEEAL_					0	0	0		ENSG00000187672|ENST00000288221|ERC2;ERC2|p.D867Mfs*31|1|0.61|ENSG00000187672|chr3:55734885-55734885|T/-|frameshift_variant	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.24261474609375	2	430.242201	858.469849	0.79148	0.00034053	0.27297	0.00011744	1.0645	0.00045797	430.2422836613649	35.487	0.4951	35.487	35.344	35.839	0					28	13	3	0	0	0	0.4723	1	13293	13293		62.978	2.6845	1	577590			23365	7208	15084	15144	23699	23699					0.034952739119944454
LATLFIMI	8	Unmodified	_LATLFIMI_					0	0	0			REV__nc|ENSG00000140254|Q1HG43-3|DUOXA1	REV__nc|ENSG00000140254|Q1HG43-3|DUOXA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2796630859375	2	461.277532	920.540511	2.5516	0.001177	2.736	0.001262	5.2875	0.002439	461.2789154027545	32.295	0.62307	32.295	32.034	32.657	0					23	12	2	0	0	0	0.6282	1	12175	12175		44.531	0	1	570950	+		23366	15064	15085	15145	23700	23700					0.077062756959549
LATLLLLHAA	10	Unmodified	_LATLLLLHAA_					0	0	0			REV__PCDHGA11|p.N380Kfs*10|1|0.29|ENSG00000253873|chr5:141422362-141422363|-/A|frameshift_variant	REV__PCDHGA11|p.N380Kfs*10|1|0.29|ENSG00000253873|chr5:141422362-141422363|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.8898010253906	3	345.890215	1034.64882	-0.77964	-0.00026967	0.89574	0.00030983	0.1161	4.0158E-05	345.89031392321795	21.326	0.33751	21.326	21.124	21.462	0					18	10	3	0	0	0	0.56931	1	6068	6068		37.812	0	1	65156	+		23367	17739	15086	15146	23701	23701					0.1328778327076634
LATQGLTVQ	9	Unmodified	_LATQGLTVQ_					0	0	0			REV__ENST00000494437.1_1_1:11805926-11806319:+|nuORF	REV__ENST00000494437.1_1_1:11805926-11806319:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7669677734375	2	465.766374	929.518196	-2.2839	-0.0010638	1.8351	0.00085474	-0.44877	-0.00020902	465.7672286087435	27.329	0.25887	27.329	27.235	27.494	0					10	6	3	0	0	0	0.18416	1	8917	8917		63.534	2.5619	1	282670	+		23368	19751	15087	15147	23702	23702					0.050617675518992655
LATQWPVQK	9	Unmodified	_LATQWPVQK_					0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.53802490234375	3	357.537953	1069.59203	-0.060359	-2.1581E-05	0.89897	0.00032142	0.83861	0.00029983	357.538248226078	23.344	0.41588	23.344	23.284	23.7	0					18	8	3	0	0	0	0.44593	1	7911	7911		37.812	2.6595	1	1663100	+		23369	21975	15088	15148	23703	23703					0.06001735714221468
LATVNSQLK	9	Unmodified	_LATVNSQLK_					0	0	0		nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;ENST00000596900.5_1_19:41036434-41060733:+|nuORF;nc|ENSG00000160460|Q9H254-5|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2872619628906	2	487.287474	972.560395	-0.53881	-0.00026255	0.23572	0.00011486	-0.30309	-0.00014769	487.28748570390314	26.06	0.1682	26.06	25.949	26.117	0					5	3	2	0	0	0	0.28897	1	9174	9174		51.193	6.8155	1	302710			23370	5367	15089	15149	23704	23704					0.07301742960282809
LATWIDKN	8	Unmodified	_LATWIDKN_					0	0	0		tr|U7T8D3|U7T8D3_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00014PE=3SV=1	tr|U7T8D3|U7T8D3_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00014PE=3SV=1	tr|U7T8D3|U7T8D3_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00014PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.76116943359375	2	480.761092	959.507631	0.67908	0.00032647	-0.64439	-0.0003098	0.034682	1.6674E-05	480.7608792612313	47.698	0.060112	47.698	47.679	47.739	0					6	3	2	0	0	0	0.68432	1	18177	18177		35.618	1.4457	1	78895			23371	23051	15090	15150	23705	23705					0.026257848974637454
LAVAADGRL	9	Unmodified	_LAVAADGRL_					0	0	0			REV__nc|ENSG00000124839|Q9H0T7-2|RAB17	REV__nc|ENSG00000124839|Q9H0T7-2|RAB17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2615051269531	2	443.261259	884.507966	-0.50859	-0.00022544	0.94285	0.00041793	0.43426	0.00019249	443.26166101050416	27.458	0.17284	27.458	27.333	27.505	0					7	4	2	0	0	0	0.45358	1	8977	8977		37.159	4.3467	1	104180	+		23372	14418	15091	15151	23706	23706					0.0610920461731439
LAVAHETSVA	10	Unmodified	_LAVAHETSVA_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.27056884765625	2	499.269281	996.52401	-0.20682	-0.00010326	0.9956	0.00049707	0.78878	0.00039382	499.2699511575791	37.175	0.33131	37.175	37.059	37.391	0					18	9	3	0	0	0	0.4758	1	14163	14163		44.117	16.235	1	123950	+		23373	12871	15092	15152	23707	23707					0.025608660635725755
LAVALGFF	8	Unmodified	_LAVALGFF_					0	0	0		nc|ENSG00000164161|Q96QV1-2|HHIP;ENSG00000164161|ENST00000296575|HHIP	nc|ENSG00000164161|Q96QV1-2|HHIP	nc|ENSG00000164161|Q96QV1-2|HHIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.2472839355469	2	419.247089	836.479626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.517	1	36.517	36.017	37.017	0								0	0	0	1.7419	1	11978	11978		24.504	0	1				23374	5664	15093	15153	23708	23708					0.054845067080464105
LAVCPLWAL	9	Unmodified	_LAVCPLWAL_					0	0	0			REV__F2|p.L15Wfs*106|1|0.16|ENSG00000180210|chr11:46719276-46719276|C/-|frameshift_variant	REV__F2|p.L15Wfs*106|1|0.16|ENSG00000180210|chr11:46719276-46719276|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2817687988281	2	493.280606	984.546659	2.7614	0.0013622	-0.16552	-8.1649E-05	2.5959	0.0012805	493.28046074400834	34.368	0.40672	34.368	34.261	34.668	0					15	8	2	0	0	0	0.12946	1	13178	13178		72.62	72.62	1	3074000	+		23375	20652	15094	15154	23709	23709					0.053767939274848686
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2606201171875	2	452.260925	902.507297	-0.021468	-9.7093E-06	-0.52916	-0.00023932	-0.55063	-0.00024903	452.26061643728553	28.779	0.21537	28.779	28.708	28.923	0					16	7	3	0	0	0	0.056004	1	9015	9015		93.143	5.3889	1	689670			23376	1373	15095	15155	23710	23710					0.052143651776077604
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2608642578125	2	452.260925	902.507297	0.67224	0.00030403	-1.0155	-0.00045925	-0.34322	-0.00015522	452.26047758321556	29.048	0.24989	29.048	28.968	29.218	0					20	6	4	0	0	0	0.032383	1	10341	10341		106.68	40.254	1	3752800			23377	1373	15095	15155	23711	23711					0.052143651776077604
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2607727050781	2	452.260925	902.507297	-1.1944	-0.00054018	0.52463	0.00023727	-0.66978	-0.00030291	452.2612177894159	28.8	0.22563	28.8	28.741	28.966	0					15	8	3	0	0	0	0.12834	1	9322	9322		72.879	14.097	1	381730			23378	1373	15095	15155	23712	23712					0.052143651776077604
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2608947753906	2	452.260925	902.507297	-0.11489	-5.1962E-05	-1.0314	-0.00046647	-1.1463	-0.00051843	452.2602299900277	29.074	0.65477	29.074	28.927	29.582	0					25	14	4	0	0	0	0.011389	1	10737	10737		138.06	38.687	1	1716700			23379	1373	15095	15155	23713	23713					0.052143651776077604
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2607727050781	2	452.260925	902.507297	0.72073	0.00032596	-1.2864	-0.00058178	-0.56564	-0.00025582	452.2603647246759	29.062	0.291	29.062	28.96	29.251	0					18	6	4	0	0	0	0.054723	1	10731	10731		93.598	30.064	1	1816600			23380	1373	15095	15155	23714	23714					0.052143651776077604
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2607116699219	2	452.260925	902.507297	0.37577	0.00016994	-0.5007	-0.00022645	-0.12493	-5.6502E-05	452.26059765517084	28.856	0.23393	28.856	28.764	28.998	0					11	5	3	0	0	0	0.056004	1	9624	9624		93.143	10.903	1	350910			23381	1373	15095	15155	23715	23715					0.052143651776077604
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.26068115234375	2	452.260925	902.507297	-0.065134	-2.9458E-05	-0.50193	-0.000227	-0.56706	-0.00025646	452.26065890105497	28.841	0.2306	28.841	28.75	28.981	0					12	5	3	0	0	0	0.022525	1	9636	9636		117.81	32.896	1	644550			23382	1373	15095	15155	23716	23716					0.052143651776077604
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2607727050781	2	452.260925	902.507297	-0.41114	-0.00018594	-0.3745	-0.00016937	-0.78564	-0.00035531	452.2605449085572	29.017	0.56429	29.017	28.86	29.424	0					23	11	4	0	0	0	0.011389	1	10566	10566		138.06	44.867	1	2708500			23383	1373	15095	15155	23717	23717					0.052143651776077604
LAVEGGQSL	9	Unmodified	_LAVEGGQSL_					0	0	0		nc|ENSG00000104691|O00124-2|UBXN8;nc|ENSG00000104691|O00124-3|UBXN8;nc|ENSG00000104691|O00124|UBXN8;ENSG00000104691|ENST00000265616|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.23724365234375	2	437.23745	872.460347	-0.92531	-0.00040458	0.41634	0.00018204	-0.50897	-0.00022254	437.2375967098418	35.214	0.14714	35.214	35.19	35.337	0					13	6	3	0	0	0	0.1424	1	11908	11908		69.628	2.134	1	200080			23384	2301	15096	15156	23718	23718					0.019015056264720442
LAVEGGQSL	9	Unmodified	_LAVEGGQSL_					0	0	0		nc|ENSG00000104691|O00124-2|UBXN8;nc|ENSG00000104691|O00124-3|UBXN8;nc|ENSG00000104691|O00124|UBXN8;ENSG00000104691|ENST00000265616|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.23724365234375	2	437.23745	872.460347	0.7289	0.0003187	-0.85913	-0.00037564	-0.13023	-5.694E-05	437.23693053463217	35.463	0.29617	35.463	35.352	35.648	0					12	8	2	0	0	0	0.16806	1	13753	13753		65.465	1.9315	1	173960			23385	2301	15096	15156	23719	23719					0.019015056264720442
LAVEGGQSL	9	Unmodified	_LAVEGGQSL_					0	0	0		nc|ENSG00000104691|O00124-2|UBXN8;nc|ENSG00000104691|O00124-3|UBXN8;nc|ENSG00000104691|O00124|UBXN8;ENSG00000104691|ENST00000265616|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2372741699219	2	437.23745	872.460347	0.72071	0.00031512	-0.95149	-0.00041603	-0.23078	-0.0001009	437.2370180225802	35.424	0.27258	35.424	35.313	35.586	0					13	5	3	0	0	0	0.0080613	1	13684	13684		145.16	17.694	1	1346700			23386	2301	15096	15156	23720	23720					0.019015056264720442
LAVEKAAEL	9	Unmodified	_LAVEKAAEL_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2760925292969	2	472.276575	942.538597	0.21361	0.00010088	-1.2088	-0.00057088	-0.99517	-0.00047	472.27597743075694	32.385	0.45467	32.385	32.059	32.514	0					17	11	3	0	0	0	0.056004	1	11895	11895		93.143	5.3889	1	487650			23387	7574	15097	15157	23721	23721					0.06502938211713172
LAVEKAAEL	9	Unmodified	_LAVEKAAEL_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2762756347656	2	472.276575	942.538597	-0.56547	-0.00026706	-0.27305	-0.00012896	-0.83852	-0.00039601	472.27639033539657	32.329	0.42118	32.329	32.017	32.438	0					11	8	2	0	0	0	0.11411	1	12190	12190		76.17	11.962	1	336860			23388	7574	15097	15157	23722	23722					0.06502938211713172
LAVEPPGI	8	Unmodified	_LAVEPPGI_					0	0	0			REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA	REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	398.2342224121094	2	398.234179	794.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.457	1	39.457	38.957	39.957	0								0	0	0	1.7419	1	15026	15026		21.702	0	1		+		23389	12925	15098	15158	23723	23723					0.04835612465763006
LAVESQAP	8	Unmodified	_LAVESQAP_					0	0	0		ENST00000489226.5_1_9:130485405-130489873:+|nuORF	ENST00000489226.5_1_9:130485405-130489873:+|nuORF	ENST00000489226.5_1_9:130485405-130489873:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.71868896484375	2	407.718893	813.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.598	1	28.598	28.098	29.098	0								0	0	0	1.7419	1	8946	8946		50.025	0	1				23390	10055	15099	15159	23724	23724					0.009058340807200693
LAVFLPAL	8	Unmodified	_LAVFLPAL_					0	0	0		ENST00000486538.1_1_3:121213416-121213641:+|nuORF	ENST00000486538.1_1_3:121213416-121213641:+|nuORF	ENST00000486538.1_1_3:121213416-121213641:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2688293457031	2	422.270564	842.526576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.696	1	29.696	29.196	30.196	0								0	0	0	1.7419	1	10023	10023		24.504	0	1				23391	10026	15100	15160	23725	23725					0.09901366259180122
LAVHLPDAK	9	Unmodified	_LAVHLPDAK_					0	0	0			REV__ENST00000528810.1_1_8:145769259-145771014:-|nuORF	REV__ENST00000528810.1_1_8:145769259-145771014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.28460693359375	2	482.284734	962.554916	-0.56525	-0.00027261	0.28745	0.00013863	-0.2778	-0.00013398	482.28483314365656	35.275	0.36757	35.275	35.123	35.49	0					32	10	4	0	0	0	0.099922	1	13633	13633		79.451	2.6044	1	2429700	+		23392	15365	15101	15161	23726	23726					0.07214064168454115
LAVHLPQGA	9	Unmodified	_LAVHLPQGA_					0	0	0		ENST00000592462.5_1_17:42452826-42458421:-|nuORF;nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B	ENST00000592462.5_1_17:42452826-42458421:-|nuORF	ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2635803222656	2	453.263802	904.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.368	1	18.368	17.868	18.868	0								0	0	0	0.29985	1	4780	4780		35.201	1.7077	1				23393	969	15102	15162	23727	23727					0.05697508479943281
LAVISQSLT	9	Unmodified	_LAVISQSLT_					0	0	0			REV__nc|ENSG00000116774|Q9NRN5-3|OLFML3	REV__nc|ENSG00000116774|Q9NRN5-3|OLFML3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2762756347656	2	466.276575	930.538597	-0.66854	-0.00031173	0.17397	8.112E-05	-0.49457	-0.00023061	466.2766138638903	28.134	0.33667	28.134	27.993	28.33	0					21	8	4	0	0	0	0.25716	1	9906	9906		54.776	0.053964	1	1990400	+		23394	20986	15103	15163	23728	23728					0.07054938211717854
LAVPVVLSCP	10	Unmodified	_LAVPVVLSCP_					0	0	0			REV__ENST00000338144.7_1_X:129843302-129917646:-|nuORF	REV__ENST00000338144.7_1_X:129843302-129917646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.28887939453125	2	499.291171	996.567789	-2.1683	-0.0010826	-1.4067	-0.00070237	-3.5751	-0.001785	499.29044884239426	36.821	0.33269	36.821	36.719	37.052	0					38	14	4	0	0	0	0.63073	1	13166	13166		30.504	0.6621	1	745450	+		23395	18424	15104	15164	23729	23729					0.06936759236350554
LAVRAPYVHG	10	Unmodified	_LAVRAPYVHG_					0	0	0			REV__nc|ENSG00000157193|Q14114-2|LRP8	REV__nc|ENSG00000157193|Q14114-2|LRP8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.8099975585938	2	541.808908	1081.60326	2.0294	0.0010996	-0.34434	-0.00018657	1.6851	0.000913	541.8087793500264	29.658	0.265	29.658	29.553	29.818	0					11	5	3	0	0	0	0.58896	1	11021	11021		35.618	0	1	646780	+		23396	21079	15105	15165	23730	23730					0.06572557808362944
LAWAASAK	8	Unmodified	_LAWAASAK_					0	0	0			REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.2317810058594	2	409.231971	816.449388	-0.1362	-5.5738E-05	0.15629	6.3957E-05	0.020084	8.2189E-06	409.23199409938275	22.067	0.11748	22.067	21.979	22.097	0					5	3	2	0	0	0	0.58597	1	6184	6184		51.335	5.3835	1	116320	+		23397	16295	15106	15166	23731	23731					0.03382148042840072
LAWPAWLL	8	Unmodified	_LAWPAWLL_					0	0	0		nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH;ENSG00000180902|ENST00000321264|D2HGDH;ENST00000463932.1_1_2:242674639-242675412:+|nuORF	nc|ENSG00000180902|Q8N465-2|D2HGDH	nc|ENSG00000180902|Q8N465-2|D2HGDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.28973388671875	2	485.281463	968.548374	0.84472	0.00040993	-2.5817	-0.0012529	-1.737	-0.00084295	485.2798365719029	32.162	0.6237	32.162	32	32.623	0					25	12	4	0	0	0	0.63381	1	12039	12039		43.626	4.3732	1	4561100			23398	6824	15107	15167	23732	23732					0.06284171007746409
LAWSASQK	8	Unmodified	_LAWSASQK_					0	0	0			REV__ENST00000465065.5_1_3:180323515-180323665:+|nuORF	REV__ENST00000465065.5_1_3:180323515-180323665:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.739990234375	2	445.74016	889.465767	-2.7414	-0.001222	1.6004	0.00071334	-1.1411	-0.00050863	445.7411725711906	29.652	0.16497	29.652	29.529	29.694	0					7	4	2	0	0	0	0.67394	1	9994	9994		37.159	0	1	79822	+		23399	15913	15108	15168	23733	23733					0.016612292089462244
LAWTILLM	8	Unmodified	_LAWTILLM_					0	0	0			REV__ENST00000600053.5_1_19:58095114-58095255:+|nuORF	REV__ENST00000600053.5_1_19:58095114-58095255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.78106689453125	2	480.782982	959.55141	-1.3698	-0.00065857	-1.7719	-0.00085189	-3.1417	-0.0015105	480.78206054762086	38.629	0.1144	38.629	38.582	38.696	0					8	6	2	0	0	0	0.61433	1	13020	13020		46.766	9.738	1	46261	+		23400	20592	15109	15169	23734	23734					0.07001678070264461
LAWVADKRL	9	Unmodified	_LAWVADKRL_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.8807678222656	3	357.881831	1070.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.356	1	17.356	16.856	17.856	0								0	0	0	0.3304	1	4125	4125		29.15	0	1				23401	2056	15110	15170	23735	23735					0.09117728468186215
LAWVSVAK	8	Unmodified	_LAWVSVAK_					0	0	0		ENST00000354410.9_2_15:100253456-100253522:+|nuORF	ENST00000354410.9_2_15:100253456-100253522:+|nuORF	ENST00000354410.9_2_15:100253456-100253522:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2630920410156	2	437.263271	872.511988	-0.39876	-0.00017436	-0.036836	-1.6107E-05	-0.4356	-0.00019047	437.26322219267104	34.102	0.26934	34.102	34.026	34.295	0					13	7	3	0	0	0	0.3961	1	12681	12681		71.296	0	1	399020			23402	8785	15111	15171	23736	23736					0.07063294111037521
LAYIAHPKL	9	Unmodified	_LAYIAHPKL_					0	0	0		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.3112182617188	2	513.310752	1024.60695	-0.4692	-0.00024084	1.1954	0.00061364	0.72625	0.00037279	513.3112435375655	30.974	0.33341	30.974	30.841	31.174	0					14	7	3	0	0	0	0.14734	1	11620	11620		68.485	13.72	1	361850			23403	5449	15112	15172	23737	23737					0.09563227582225409
LAYIAHPKLG	10	Unmodified	_LAYIAHPKLG_					0	0	0		ENST00000480306.5_1_3:52027767-52028806:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.54998779296875	3	361.550082	1081.62842	0.48945	0.00017696	-0.60686	-0.00021941	-0.11741	-4.245E-05	361.54976039735703	29.867	0.21539	29.867	29.734	29.949	0					9	4	3	0	0	0	0.58189	1	11127	11127		36.447	2.2742	1	219980			23404	5449	15113	15173	23738	23738					0.09086612610917655
LAYNLLKR	8	Unmodified	_LAYNLLKR_					0	0	0		ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	330.8748779296875	3	330.874677	989.6022	-0.030926	-1.0233E-05	-0.35983	-0.00011906	-0.39076	-0.00012929	330.87454784731545	27.718	0.22261	27.718	27.616	27.838	0					8	5	2	0	0	0	0.74117	1	9093	9093		30.504	6.3009	1	93070			23405	1287	15114	15174	23739	23739					0.10698343439469227
LAYYNFEDL	9	Unmodified	_LAYYNFEDL_					0	0	0		ENSG00000177465|ENST00000326303|ACOT4	ENSG00000177465|ENST00000326303|ACOT4	ENSG00000177465|ENST00000326303|ACOT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.181640625	3	383.181723	1146.52334	-0.55966	-0.00021445	-0.24272	-9.3005E-05	-0.80238	-0.00030746	383.1819132245599	24.684	0.20719	24.684	24.58	24.787	0					15	4	4	0	0	0	0.50461	1	8555	8555		31.53	0	1	1798800			23406	6668	15115	15175	23740	23740					-0.044059733761287134
LCALAMVRL	9	Unmodified	_LCALAMVRL_					0	0	0			REV__ENST00000316292.13_1_6:74230568-74230718:-|nuORF	REV__ENST00000316292.13_1_6:74230568-74230718:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2841491699219	2	495.285366	988.556178	0.70158	0.00034748	-2.196	-0.0010876	-1.4944	-0.00074016	495.28441738416575	40.658	0.21791	40.658	40.565	40.783	0					15	9	2	0	0	0	0.1236	1	16023	16023		73.975	11.867	1	136160	+		23407	18304	15116	15176	23741	23741					0.06144238941362801
LCALCVSAL	9	Carbamidomethyl (C)	_LCALC(Carbamidomethyl (C))VSAL_	LCALC(1)VSAL		LC(-34)ALC(34)VSAL		0	1	0		ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.244873046875	2	475.245906	948.477259	-0.42031	-0.00019975	-1.0416	-0.00049502	-1.4619	-0.00069477	475.2452630711181	24.13	0.27751	24.13	24.035	24.312	0					14	6	4	0	0	0	0.23186	1	7467	7467		57.811	7.7867	2	404510			23408	7147	15117	15177	23742	23742	302				0.0009596691643309896
LCALDLEL	8	Unmodified	_LCALDLEL_					0	0	0		ENST00000454079.5_1_3:50099151-50099352:+|nuORF	ENST00000454079.5_1_3:50099151-50099352:+|nuORF	ENST00000454079.5_1_3:50099151-50099352:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.239990234375	2	445.238604	888.462655	0.59512	0.00026497	2.3	0.0010241	2.8952	0.001289	445.2396590412867	25.599	0.17954	25.599	25.496	25.675	0					9	4	3	0	0	0	0.527	1	8796	8796		57.453	2.5581	1	224170			23409	9672	15118	15178	23743	23743					0.01396218039917585
LCALLGDVRCP	11	Unmodified	_LCALLGDVRCP_					0	0	0			REV__ENST00000445498.5_1_10:11936211-11936358:-|nuORF	REV__ENST00000445498.5_1_10:11936211-11936358:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.3035888671875	2	580.301744	1158.58893	3.2472	0.0018844	0.36045	0.00020917	3.6077	0.0020935	580.3019581245231	29.134	0.45948	29.134	29.026	29.485	0					22	9	4	0	0	0	0.10797	1	10649	10649		87.754	9.4905	1	1120600	+		23410	19274	15119	15179	23744	23744					0.01598401273554373
LCALSWAKK	9	Unmodified	_LCALSWAKK_					0	0	0		nc|ENSG00000165105|Q8IZ41-2|RASEF	nc|ENSG00000165105|Q8IZ41-2|RASEF	nc|ENSG00000165105|Q8IZ41-2|RASEF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.29095458984375	2	510.288963	1018.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.59	1	13.59	13.09	14.09	0								0	0	0	0.3304	1	2756	2756		29.15	3.5755	1				23411	11621	15120	15180	23745	23745					0.054832948134276194
LCALSWAKK	9	Unmodified	_LCALSWAKK_					0	0	0		nc|ENSG00000165105|Q8IZ41-2|RASEF	nc|ENSG00000165105|Q8IZ41-2|RASEF	nc|ENSG00000165105|Q8IZ41-2|RASEF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.290283203125	2	510.288963	1018.56337	3.0535	0.0015581	-1.7912	-0.00091405	1.2622	0.00064409	510.28873883856147	13.757	0.30831	13.757	13.638	13.946	0					15	6	4	0	0	0	0.30951	1	3274	3274		49.442	5.0644	1	343990			23412	11621	15120	15180	23746	23746					0.054832948134276194
LCARSPLVL	9	Unmodified	_LCARSPLVL_					0	0	0			REV__ENST00000493195.5_1_1:159902482-159902782:-|nuORF	REV__ENST00000493195.5_1_1:159902482-159902782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2889099121094	2	486.288963	970.563372	-0.29044	-0.00014124	1.4466	0.00070347	1.1562	0.00056224	486.28912365902886	42.149	0.12357	42.149	42.1	42.224	0					9	6	2	0	0	0	0.41354	1	15996	15996		40.573	10.069	1	45577	+		23413	19736	15121	15181	23747	23747					0.07691294813446348
LCAWAVFR	8	Unmodified	_LCAWAVFR_					0	0	0			REV__ENST00000544275.1_1_16:19659174-19663786:+|nuORF	REV__ENST00000544275.1_1_16:19659174-19663786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.25531005859375	2	483.254923	964.495293	-1.2803	-0.00061872	2.4633	0.0011904	1.183	0.00057169	483.25607015408843	19.812	0.14956	19.812	19.731	19.881	0					7	5	2	0	0	0	0.7155	1	5425	5425		31.579	0.049078	1	116520	+		23414	20155	15122	15182	23748	23748					0.011624699534422689
LCAWKGIV	8	Unmodified	_LCAWKGIV_					0	0	0		ENST00000568363.5_1_17:75089350-75089416:+|nuORF	ENST00000568363.5_1_17:75089350-75089416:+|nuORF	ENST00000568363.5_1_17:75089350-75089416:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2402648925781	2	445.251849	888.489145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.626	1	25.626	25.126	26.126	0								0	0	0	1.7419	1	8780	8780		50.025	2.065	1				23415	10773	15123	15183	23749	23749					0.04043951721916983
LCAYGAASSAL	11	Unmodified	_LCAYGAASSAL_					0	0	0			REV__ENST00000568709.5_1_16:88722865-88725108:-|nuORF	REV__ENST00000568709.5_1_16:88722865-88725108:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.750244140625	2	513.749867	1025.48518	0.024043	1.2352E-05	0.01358	6.9767E-06	0.037622	1.9329E-05	513.7498937068882	35.191	0.23739	35.191	35.113	35.35	0					20	11	2	0	0	0	0.61618	1	11522	11522		35.618	1.4457	1	155370	+		23416	16192	15124	15184	23750	23750					-0.026541825624462945
LCCHLRSL	8	Unmodified	_LCCHLRSL_					0	0	0		COG1|p.H154R|1|0.35|ENSG00000166685|chr17:73196652-73196652|A/G|missense_variant	COG1|p.H154R|1|0.35|ENSG00000166685|chr17:73196652-73196652|A/G|missense_variant	COG1|p.H154R|1|0.35|ENSG00000166685|chr17:73196652-73196652|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7450866699219	2	472.743865	943.473177	2.4262	0.001147	0.3035	0.00014348	2.7297	0.0012904	472.74412233886954	33.695	0.52011	33.695	33.517	34.037	0					24	11	3	0	0	0	0.28158	1	12837	12837		88.643	27.671	1	1274700			23417	587	15125	15185	23751	23751					-0.0008207778664655052
LCCKAWAF	8	Carbamidomethyl (C)	_LCC(Carbamidomethyl (C))KAWAF_	LCC(1)KAWAF		LC(-38)C(38)KAWAF		0	1	0			REV__ENST00000303296.8_1_11:33375519-33375660:+|nuORF	REV__ENST00000303296.8_1_11:33375519-33375660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.73419189453125	2	499.732966	997.451379	1.0746	0.00053701	0.88753	0.00044353	1.9621	0.00098054	499.7334513673533	33.011	0.64031	33.011	32.909	33.549	0					28	13	3	0	0	0	0.4434	1	12487	12487		65.897	65.897	2	4511500	+		23418	18219	15126	15186	23752	23752	643				-0.047448825352034874
LCCLLGGAIV	10	Unmodified	_LCCLLGGAIV_					0	0	0			REV__SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant	REV__SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2632141113281	2	481.264099	960.513645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.857	1	22.857	22.357	23.357	0								0	0	0	0.27548	1	6880	6880		54.765	7.1073	1		+		23419	21525	15127	15187	23753	23753					0.03180843813129286
LCCSSLGL	8	Unmodified	_LCCSSLGL_					0	0	0		ENST00000333319.6_1_7:156432207-156432471:-|nuORF	ENST00000333319.6_1_7:156432207-156432471:-|nuORF	ENST00000333319.6_1_7:156432207-156432471:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	398.1903991699219	2	398.1906	794.366646	-0.31218	-0.00012431	-0.59053	-0.00023514	-0.90271	-0.00035945	398.19036942178207	19.782	0.17598	19.782	19.693	19.869	0					7	4	2	0	0	0	0.68754	1	6039	6039		35.201	1.6851	1	497070			23420	8688	15128	15188	23754	23754					-0.03876253071814517
LCCWLGMAKWV	11	Unmodified	_LCCWLGMAKWV_					0	0	0			REV__MKS1|p.F377Lfs*53|1|0.3|ENSG00000011143|chr17:58208139-58208139|A/-|frameshift_variant	REV__MKS1|p.F377Lfs*53|1|0.3|ENSG00000011143|chr17:58208139-58208139|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.21258544921875	3	437.213319	1308.61813	-0.40899	-0.00017882	-0.47373	-0.00020712	-0.88273	-0.00038594	437.2135394941817	14.705	0.26369	14.705	14.646	14.91	0					7	5	2	0	0	0	0.68404	1	3887	3887		19.263	0	1	146380	+		23421	20885	15129	15189	23755	23755					-0.023837777018115958
LCDDYDEDS	9	Unmodified	_LCDDYDEDS_					0	0	0		nc|ENSG00000168418|Q8TDN1-2|KCNG4;ENSG00000168418|ENST00000308251|KCNG4	nc|ENSG00000168418|Q8TDN1-2|KCNG4	nc|ENSG00000168418|Q8TDN1-2|KCNG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.680908203125	2	537.682044	1073.34954	-0.30269	-0.00016275	-2.4201	-0.0013012	-2.7228	-0.001464	537.6815513947644	25.703	0.94544	25.703	25.03	25.976	0					78	27	4	0	0	0	0.5654	1	7801	7801		25.45	0	1	356640			23422	6091	15130	15190	23756	23756					-0.18420546934589765
LCFGSHKPY	9	Unmodified	_LCFGSHKPY_					0	0	0			REV__ENSG00000143891|ENST00000272252|GALM	REV__ENSG00000143891|ENST00000272252|GALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2570190429688	2	526.25512	1050.49569	0.22368	0.00011771	2.7978	0.0014724	3.0215	0.0015901	526.2567001515152	26.702	0.26794	26.702	26.594	26.862	0					9	5	2	0	0	0	0.22377	1	9625	9625		58.782	5.4305	1	195670	+		23423	15215	15131	15191	23757	23757					-0.0275415511734991
LCFHSITTL	9	Unmodified	_LCFHSITTL_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7677001953125	2	517.770603	1033.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.438	1	29.438	28.938	29.938	0								0	0	0	0.16876	1	9290	9290		55.504	0.72789	1		+		23424	15143	15132	15192	23758	23758					0.011229981968654101
LCFLSVLIF	9	Unmodified	_LCFLSVLIF_					0	0	0			REV__ENST00000576693.1_1_17:7506199-7507356:-|nuORF	REV__ENST00000576693.1_1_17:7506199-7507356:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.8043823242188	2	527.803914	1053.59328	0.93089	0.00049133	-0.72641	-0.0003834	0.20448	0.00010793	527.8036176287832	28.105	0.19469	28.105	28.012	28.207	0					7	4	2	0	0	0	0.49003	1	10294	10294		33.516	0.70317	1	94857	+		23425	20418	15133	15193	23759	23759					0.06862233758761249
LCGEQPMCWE	10	Oxidation (M)	_LCGEQPM(Oxidation (M))CWE_		LCGEQPM(1)CWE		LCGEQPM(42)CWE	0	0	1		ENST00000461141.5_1_3:183952309-183959823:+|nuORF;VWA5B2|p.V1061Gfs*60|1|0.12|ENSG00000145198|chr3:184241398-184241399|-/C|frameshift_variant;ENSG00000145198|ENST00000691901|VWA5B2	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	606.2296752929688	2	606.230127	1210.4457	0.44228	0.00026813	-0.7962	-0.00048268	-0.35391	-0.00021455	606.2299213097499	18.332	0.42273	18.332	17.971	18.394	0					12	8	3	0	0	0	0.52707	1	5623	5623		42.396	7.2441	1	326080			23426	4658	15134	15194	23760	23760		193			-0.1511039389981761
LCGGLCVTAL	10	Unmodified	_LCGGLCVTAL_					0	0	0			REV__nc|ENSG00000129566|Q99973-2|TEP1	REV__nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2453308105469	2	475.245906	948.477259	-0.0067238	-3.1955E-06	-1.194	-0.00056743	-1.2007	-0.00057062	475.24521412820593	24.028	0.24563	24.028	23.954	24.199	0					14	7	3	0	0	0	0.42631	1	7042	7042		53.351	0.26249	1	223780	+		23427	14551	15135	15195	23761	23761					0.0009596691642173028
LCGLRVAIS	9	Unmodified	_LCGLRVAIS_					0	0	0		ENST00000307564.8_1_9:117129889-117130765:-|nuORF	ENST00000307564.8_1_9:117129889-117130765:-|nuORF	ENST00000307564.8_1_9:117129889-117130765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7774963378906	2	466.273312	930.532072	4.0452	0.0018862	2.7364	0.0012759	6.7816	0.0031621	466.2745453250185	29.984	0.15617	29.984	29.932	30.088	0					8	5	2	0	0	0	0.32741	1	9809	9809		47.916	1.9636	1	81109			23428	8530	15136	15196	23762	23762					0.06402721779340936
LCGNERSKHQ	10	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))GNERSKHQ_	LC(1)GNERSKHQ		LC(41)GNERSKHQ		0	1	0		ENST00000503999.2_1_15:66109611-66109743:-|nuORF;ENST00000444945.1_1_19:11777510-11777738:-|nuORF	ENST00000503999.2_1_15:66109611-66109743:-|nuORF	ENST00000503999.2_1_15:66109611-66109743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.7948608398438	2	614.796203	1227.57785	0.34375	0.00021134	-3.7103	-0.0022811	-3.3666	-0.0020698	614.7944326267053	17.777	0.27075	17.777	17.668	17.939	0					11	5	3	0	0	0	0.536	1	5353	5353		41.427	7.505	1	397950			23429	9609	15137	15197	23763	23763	395				-0.026832847763671452
LCGQPFWI	8	Unmodified	_LCGQPFWI_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2403869628906	2	482.241481	962.468409	-2.9215	-0.0014089	0.9714	0.00046845	-1.9501	-0.00094041	482.2419934753014	17.299	0.31742	17.299	17.215	17.533	0					17	9	4	0	0	0	0.527	1	4274	4274		57.453	57.453	1	505640			23430	9457	15138	15198	23764	23764					-0.014326386577636185
LCGSIVWW	8	Unmodified	_LCGSIVWW_					0	0	0			REV__SLC14A2|p.A615V|1|0.33|ENSG00000132874|chr18:45667959-45667959|C/T|missense_variant	REV__SLC14A2|p.A615V|1|0.33|ENSG00000132874|chr18:45667959-45667959|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2408447265625	2	482.241481	962.468409	-0.56053	-0.00027031	-0.58218	-0.00028075	-1.1427	-0.00055106	482.2410712769307	17.525	0.16238	17.525	17.421	17.583	0					5	3	2	0	0	0	0.75243	1	5233	5233		26.796	2.2921	1	167740	+		23431	21523	15139	15199	23765	23765					-0.014326386577636185
LCGTLSRLAI	10	Unmodified	_LCGTLSRLAI_					0	0	0		nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.80419921875	2	523.804977	1045.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.536	1	32.536	32.036	33.036	0								0	0	0	0.3598	1	10862	10862		15.642	0	1				23432	2384	15140	15200	23766	23766					0.07442662496555386
LCGVSHSSI	9	Unmodified	_LCGVSHSSI_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|176|2|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|176|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.72369384765625	2	451.723652	901.432752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.219	1	19.219	18.719	19.719	0								0	0	0	0.13522	1	6037	6037		63.306	4.5243	1		+		23433	20821	15141	15201	23767	23767					-0.021907209054120358
LCHGPPGAGGL	11	Unmodified	_LCHGPPGAGGL_					0	0	0			REV__NUTM1|p.M697Wfs*28|1|0.12|ENSG00000184507|chr15:34356176-34356176|C/-|frameshift_variant	REV__NUTM1|p.M697Wfs*28|1|0.12|ENSG00000184507|chr15:34356176-34356176|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.74700927734375	2	489.744919	977.475285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.284	1	31.284	30.784	31.784	0								0	0	0	0.38303	1	11782	11782		40.573	6.4001	1		+		23434	16987	15142	15202	23768	23768					-0.014353257771631434
LCHVCCMKK	9	Unmodified	_LCHVCCMKK_					0	0	0		ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant;ENSG00000137845|ENST00000260408|ADAM10;ENST00000462061.1_1_15:58903171-58913692:-|nuORF;ENST00000470269.5_1_15:58902390-58913692:-|nuORF;nc|ENSG00000137845|O14672-2|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7459716796875	2	532.747236	1063.47992	0.28885	0.00015389	-2.2349	-0.0011906	-1.946	-0.0010367	532.7459515607202	28.12	0.14417	28.12	28.029	28.173	0					5	3	2	0	0	0	0.47428	1	10275	10275		35.201	1.0282	1	95003			23435	47	15143	15203	23769	23769					-0.04928224221930577
LCHWEELS	8	Unmodified	_LCHWEELS_					0	0	0			REV__ENSG00000256771|ENST00000589717|ZNF253	REV__ENSG00000256771|ENST00000589717|ZNF253	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7306213378906	2	508.728935	1015.44332	-0.396	-0.00020146	3.3543	0.0017064	2.9583	0.001505	508.73058021937175	30.131	0.23737	30.131	30.025	30.263	0					12	5	3	0	0	0	0.23567	1	11219	11219		119.22	7.5729	1	422420	+		23436	17761	15144	15204	23770	23770					-0.06378738250975857
LCIGWKLM	8	Unmodified	_LCIGWKLM_					0	0	0			REV__ENST00000608354.1_1_22:30642479-30642794:+|nuORF	REV__ENST00000608354.1_1_22:30642479-30642794:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.26171875	2	482.261359	962.508165	0.56137	0.00027073	-0.09593	-4.6263E-05	0.46544	0.00022446	482.26127416530875	33.61	0.17034	33.61	33.538	33.708	0					6	4	2	0	0	0	0.67475	1	12465	12465		37.028	1.8278	1	108310	+		23437	20631	15145	15205	23771	23771					0.025411650213186476
LCKECPKI	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))KECPKI_	LC(0.997)KEC(0.003)PKI		LC(25)KEC(-25)PKI		0	1	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7579345703125	2	495.759181	989.503808	-0.062687	-3.1077E-05	-2.6838	-0.0013305	-2.7464	-0.0013616	495.7578743579673	25.195	0.11563	25.195	25.11	25.226	0					6	3	2	0	0	0	0.49216	1	7553	7553		60.972	8.6728	2	58619			23438	5119	15146	15206	23772	23772	208				0.008636558077569134
LCKHRVAPG	9	Unmodified	_LCKHRVAPG_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7742614746094	2	490.776554	979.538554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.881	1	27.881	27.381	28.381	0								0	0	0	0.22106	1	9179	9179		47.916	0.25827	1		+		23439	15549	15147	15207	23773	23773					0.047966597307322445
LCKVSVVK	8	Unmodified	_LCKVSVVK_					0	0	0			REV__ENST00000460291.1_1_3:11383675-11389548:+|nuORF	REV__ENST00000460291.1_1_3:11383675-11389548:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.27099609375	2	438.272781	874.531009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.428	1	26.428	25.928	26.928	0								0	0	0	1.7419	1	8310	8310		23.042	1.3402	1		+		23440	17342	15148	15208	23774	23774					0.0887250741045591
LCLAWIAK	8	Unmodified	_LCLAWIAK_					0	0	0			REV__ENST00000394808.2_1_6:53072259-53072454:-|nuORF	REV__ENST00000394808.2_1_6:53072259-53072454:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.26806640625	2	459.267499	916.520445	0.7222	0.00033169	0.39464	0.00018125	1.1168	0.00051293	459.26736070253355	30.732	0.59643	30.732	30.496	31.093	0					22	13	4	0	0	0	0.24795	1	11507	11507		104.94	26.68	1	1258900	+		23441	18870	15149	15209	23775	23775					0.05884524756004339
LCLCQICCLM	10	Unmodified	_LCLCQICCLM_					0	0	0			REV__ENSG00000061492|ENST00000506684|WNT8A	REV__ENSG00000061492|ENST00000506684|WNT8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5037841796875	3	381.501483	1141.48262	3.234	0.0012338	2.327	0.00088775	5.561	0.0021215	381.5025553353868	29.625	0.51531	29.625	29.515	30.031	0					23	10	3	0	0	0	0.54387	1	10883	10883		36.447	4.8125	1	4449500	+		23442	13086	15150	15210	23776	23776					-0.08246136879301957
LCLGRALL	8	Unmodified	_LCLGRALL_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.76446533203125	2	429.765123	857.515694	-0.24286	-0.00010437	0.086373	3.712E-05	-0.15648	-6.7251E-05	429.7650582320941	28.414	0.21276	28.414	28.296	28.509	0					12	7	2	0	0	0	0.78999	1	8908	8908		13.775	0	1	145060			23443	1123	15151	15211	23777	23777					0.08123640613257521
LCLKWLPS	8	Unmodified	_LCLKWLPS_					0	0	0		ENST00000297578.8_1_8:104412404-104412587:-|nuORF	ENST00000297578.8_1_8:104412404-104412587:-|nuORF	ENST00000297578.8_1_8:104412404-104412587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2735900878906	2	480.272781	958.531009	0.93059	0.00044694	0.5482	0.00026329	1.4788	0.00071022	480.2731131114664	32.008	0.6712	32.008	31.65	32.321	0					41	13	4	0	0	0	0.54629	1	12012	12012		55.504	0	1	2623800			23444	8466	15152	15212	23778	23778					0.05008507410445873
LCLKWLPS	8	Unmodified	_LCLKWLPS_					0	0	0		ENST00000297578.8_1_8:104412404-104412587:-|nuORF	ENST00000297578.8_1_8:104412404-104412587:-|nuORF	ENST00000297578.8_1_8:104412404-104412587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2738952636719	2	480.272781	958.531009	2.318	0.0011133	0.20308	9.7534E-05	2.5211	0.0012108	480.2726400361066	33.981	1.0082	33.981	33.466	34.474	0					41	21	4	0	0	0	0.5676	1	13061	13061		53.351	0	1	9296600			23445	8466	15152	15212	23779	23779					0.05008507410445873
LCLLAWAGL	9	Unmodified	_LCLLAWAGL_					0	0	0		CON__Q3SZH5;ENSG00000135744|ENST00000366667|AGT	CON__Q3SZH5	CON__Q3SZH5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.27386474609375	2	480.272781	958.531009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.299	1	37.299	36.799	37.799	0								0	0	0	0.28056	1	13354	13354		39.021	0	1			+	23446	658	15153	15213	23780	23780					0.05008507410445873
LCLLGNCLP	9	Unmodified	_LCLLGNCLP_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|274|2|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|274|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.24835205078125	2	473.248449	944.482345	-2.507	-0.0011864	2.2396	0.0010599	-0.26735	-0.00012652	473.24938669811326	26.077	0.13761	26.077	25.984	26.121	0					5	3	2	0	0	0	0.39123	1	8353	8353		42.474	1.9018	1	71461	+		23447	12472	15154	15214	23781	23781					0.007882707790372478
LCLLNKCEDV	10	Unmodified	_LCLLNKCEDV_					0	0	0			REV__ZNF486|p.K133_L134insNLLC|1|0.04|ENSG00000256229|chr19:20197109-20197110|-/AATCTTTTATGC|inframe_insertion	REV__ZNF486|p.K133_L134insNLLC|1|0.04|ENSG00000256229|chr19:20197109-20197110|-/AATCTTTTATGC|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.285888671875	2	575.28576	1148.55697	0.99615	0.00057307	-1.1385	-0.00065497	-0.14237	-8.1901E-05	575.28490477193	29.157	0.12842	29.157	29.089	29.218	0					10	4	3	0	0	0	0.21754	1	9164	9164		77.318	8.6918	1	112160	+		23448	22322	15155	15215	23782	23782					-0.011370112002396127
LCLLNKLNGI	10	Unmodified	_LCLLNKLNGI_					0	0	0			REV__ENST00000487251.5_1_6:53762124-53769284:+|nuORF	REV__ENST00000487251.5_1_6:53762124-53769284:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.55596923828125	3	367.554727	1099.64235	3.1692	0.0011649	0.031785	1.1683E-05	3.201	0.0011765	367.55480555479136	16.771	0.20959	16.771	16.714	16.923	0					5	4	2	0	0	0	0.60281	1	4728	4728		33.922	33.922	1	1037900	+		23449	14916	15156	15216	23783	23783					0.09651522047715844
LCLLWAAL	8	Unmodified	_LCLLWAAL_					0	0	0		GPR137|p.R73C|1|0.31|ENSG00000173264|chr11:64286741-64286741|C/T|missense_variant;ENST00000536017.1_1_11:64053906-64055433:+|nuORF;GPR137|p.Q245Rfs*21|1|0.42|ENSG00000173264|chr11:64288159-64288159|C/-|frameshift_variant;nc|ENSG00000173264|Q96N19-5|GPR137;nc|ENSG00000173264|Q96N19-3|GPR137;ENSG00000173264|ENST00000438980|GPR137;nc|ENSG00000173264|Q96N19|GPR137;ENSG00000180998|ENST00000321662|GPR137C;nc|ENSG00000173264|Q96N19-4|GPR137	GPR137|p.R73C|1|0.31|ENSG00000173264|chr11:64286741-64286741|C/T|missense_variant	GPR137|p.R73C|1|0.31|ENSG00000173264|chr11:64286741-64286741|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7632751464844	2	451.762049	901.509546	-0.3582	-0.00016182	2.7725	0.0012525	2.4143	0.0010907	451.7633705233111	37.486	0.14793	37.486	37.376	37.524	0					7	4	2	0	0	0	0.63381	1	14657	14657		43.626	3.0534	1	74470			23450	6418	15157	15217	23784	23784					0.05485122381708152
LCLPESLP	8	Unmodified	_LCLPESLP_					0	0	0		nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7;ENST00000264276.10_1_2:202566016-202566163:-|nuORF	nc|ENSG00000197548|O95352-2|ATG7	nc|ENSG00000197548|O95352-2|ATG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2348327636719	2	436.233322	870.45209	2.6585	0.0011597	1.0469	0.00045667	3.7054	0.0016164	436.2337871635329	34.029	0.21045	34.029	33.924	34.134	0					11	4	3	0	0	0	0.61433	1	13014	13014		46.766	2.2354	1	931910			23451	7470	15158	15218	23785	23785					0.011682353855007932
LCLQGRPFDSG	11	Unmodified	_LCLQGRPFDSG_					0	0	0			REV__WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant	REV__WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.7918701171875	2	596.792598	1191.57064	-0.56022	-0.00033433	-0.0038942	-2.324E-06	-0.56411	-0.00033666	596.7926321532515	37.482	0.33286	37.482	37.34	37.673	0					55	18	4	0	0	0	0.67178	1	12644	12644		30.318	1.1477	1	628430	+		23452	22296	15159	15219	23786	23786					-0.017480173768035456
LCLRGPHS	8	Unmodified	_LCLRGPHS_					0	0	0			REV__ENST00000569028.2_1_16:34712339-34712507:-|nuORF	REV__ENST00000569028.2_1_16:34712339-34712507:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.7323913574219	2	441.734354	881.454156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.212	1	25.212	24.712	25.712	0								0	0	0	1.7419	1	7982	7982		33.516	0.70317	1		+		23453	16963	15160	15220	23787	23787					0.0086870891396984
LCLSEIHKM	9	Unmodified	_LCLSEIHKM_					0	0	0		INSR|p.G1342Afs*23|1|0.12|ENSG00000171105|chr19:7117180-7117180|C/-|frameshift_variant;nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	INSR|p.G1342Afs*23|1|0.12|ENSG00000171105|chr19:7117180-7117180|C/-|frameshift_variant	INSR|p.G1342Afs*23|1|0.12|ENSG00000171105|chr19:7117180-7117180|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.27880859375	2	537.277738	1072.54092	0.69785	0.00037494	2.3751	0.0012761	3.0729	0.001651	537.27874974023	31.284	0.21206	31.284	31.174	31.386	0					8	4	2	0	0	0	0.26904	1	11691	11691		53.351	3.8154	1	237580			23454	6277	15161	15221	23788	23788					0.0075532735352226155
LCLSKWVS	8	Unmodified	_LCLSKWVS_					0	0	0		ENST00000447399.6_1_11:9771951-9772089:+|nuORF	ENST00000447399.6_1_11:9771951-9772089:+|nuORF	ENST00000447399.6_1_11:9771951-9772089:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2552490234375	2	468.254588	934.494624	0.58367	0.0002733	0.42221	0.0001977	1.0059	0.00047101	468.25471533935183	28.299	0.2662	28.299	28.194	28.46	0					10	5	3	0	0	0	0.61938	1	10227	10227		45.952	5.3793	1	737630			23455	9628	15162	15222	23789	23789					0.024756305137316303
LCLSRVIDE	9	Unmodified	_LCLSRVIDE_					0	0	0			REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2794189453125	2	524.278792	1046.54303	1.5821	0.00082944	-0.74222	-0.00038913	0.83984	0.00044031	524.2787986220022	29.278	0.18644	29.278	29.181	29.367	0					6	4	2	0	0	0	0.37197	1	9838	9838		44.117	0	1	64374	+		23456	14369	15163	15223	23790	23790					0.02162079362960867
LCLSTEFTV	9	Unmodified	_LCLSTEFTV_					0	0	0		ENST00000400181.8_1_1:23381567-23381600:+|nuORF	ENST00000400181.8_1_1:23381567-23381600:+|nuORF	ENST00000400181.8_1_1:23381567-23381600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.75396728515625	2	506.754618	1011.49468	-0.36757	-0.00018627	-0.79815	-0.00040447	-1.1657	-0.00059073	506.7541861705298	34.058	0.19214	34.058	33.981	34.173	0					10	4	3	0	0	0	0.56424	1	13095	13095		12.207	0	1	226830			23457	9244	15164	15224	23791	23791					-0.010604142769238933
LCLSTFKQ	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LSTFKQ_	LC(1)LSTFKQ		LC(63)LSTFKQ		0	1	0			REV__nc|ENSG00000108641|Q9UPM9-2|B9D1	REV__nc|ENSG00000108641|Q9UPM9-2|B9D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.76397705078125	2	498.762778	995.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.032	1	17.032	16.532	17.532	0								0	0	0	1.7419	1	4733	4733		63.306	7.8021	1		+		23458	20968	15165	15225	23792	23792	722				0.01306711679842465
LCLVLIRW	8	Unmodified	_LCLVLIRW_					0	0	0			REV__ENST00000303531.11_2_16:24231131-24231431:+|nuORF	REV__ENST00000303531.11_2_16:24231131-24231431:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3108825683594	2	508.309698	1014.60484	2.9729	0.0015112	-0.80481	-0.00040909	2.1681	0.0011021	508.3092312405735	24.355	0.26685	24.355	24.246	24.513	0					13	5	4	0	0	0	0.32408	1	8403	8403		57.453	0	1	1540500	+		23459	18223	15166	15226	23793	23793					0.09812475572778112
LCLWGIAL	8	Unmodified	_LCLWGIAL_					0	0	0		ENST00000482771.1_1_1:33360408-33361058:-|nuORF;nc|ENSG00000121900|Q969K7-3|TMEM54;nc|ENSG00000121900|Q969K7-2|TMEM54;ENSG00000121900|ENST00000373463|TMEM54	ENST00000482771.1_1_1:33360408-33361058:-|nuORF	ENST00000482771.1_1_1:33360408-33361058:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.75518798828125	2	444.754224	887.493896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.132	1	34.132	33.632	34.632	0								0	0	0	1.7419	1	12686	12686		43.626	0	1				23460	3240	15167	15227	23794	23794					0.045648358646758425
LCLWGIAL	8	Unmodified	_LCLWGIAL_					0	0	0		ENST00000482771.1_1_1:33360408-33361058:-|nuORF;nc|ENSG00000121900|Q969K7-3|TMEM54;nc|ENSG00000121900|Q969K7-2|TMEM54;ENSG00000121900|ENST00000373463|TMEM54	ENST00000482771.1_1_1:33360408-33361058:-|nuORF	ENST00000482771.1_1_1:33360408-33361058:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7543640136719	2	444.754224	887.493896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.131	1	34.131	33.631	34.631	0								0	0	0	1.7419	1	13129	13129		43.626	0	1				23461	3240	15167	15227	23795	23795					0.045648358646758425
LCLWGIAL	8	Unmodified	_LCLWGIAL_					0	0	0		ENST00000482771.1_1_1:33360408-33361058:-|nuORF;nc|ENSG00000121900|Q969K7-3|TMEM54;nc|ENSG00000121900|Q969K7-2|TMEM54;ENSG00000121900|ENST00000373463|TMEM54	ENST00000482771.1_1_1:33360408-33361058:-|nuORF	ENST00000482771.1_1_1:33360408-33361058:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.75543212890625	2	444.754224	887.493896	-0.47071	-0.00020935	2.7426	0.0012198	2.2718	0.0010104	444.7555891779912	34.061	0.16096	34.061	33.957	34.118	0					6	3	2	0	0	0	0.42924	1	13027	13027		67.327	0	1	141300			23462	3240	15167	15227	23796	23796					0.045648358646758425
LCMLFQRL	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))MLFQRL_	LC(1)MLFQRL		LC(45)MLFQRL		0	1	0			REV__CALU|p.S11T|1|0.35|ENSG00000128595|chr7:128748614-128748614|T/A|missense_variant	REV__CALU|p.S11T|1|0.35|ENSG00000128595|chr7:128748614-128748614|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7908325195312	2	540.788272	1079.56199	3.4966	0.0018909	1.7732	0.00095894	5.2699	0.0028499	540.7888743525926	10.646	0.038651	10.646	10.628	10.667	0					4	2	2	0	0	0	0.6282	1	2036	2036		44.531	13.001	1	69414	+		23463	12322	15168	15228	23797	23797	484				0.025393374530267465
LCMLGRIHS	9	Unmodified	_LCMLGRIHS_					0	0	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.27197265625	2	515.270247	1028.52594	3.2388	0.0016688	-0.22302	-0.00011491	3.0158	0.0015539	515.2702517144861	37.878	0.62019	37.878	37.582	38.202	0					20	13	2	0	0	0	0.22377	1	14832	14832		58.782	0	1	1897300	+		23464	13615	15169	15229	23798	23798					0.012818802761785264
LCMLMSSI	8	2 Oxidation (M)	_LCM(Oxidation (M))LM(Oxidation (M))SSI_		LCM(1)LM(1)SSI		LCM(57)LM(57)SSI	0	0	2		ENST00000355485.6_1_1:116234212-116234524:+|nuORF	ENST00000355485.6_1_1:116234212-116234524:+|nuORF	ENST00000355485.6_1_1:116234212-116234524:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2105712890625	2	465.210675	928.406796	0.51398	0.00023911	-0.75384	-0.00035069	-0.23986	-0.00011159	465.2103455082644	22.794	0.29324	22.794	22.687	22.98	0					14	7	2	0	0	0	0.527	1	7457	7457		57.453	57.453	1	498450			23465	8798	15170	15230	23799	23799		348;349			-0.06027074463554527
LCMRRRKP	8	Unmodified	_LCMRRRKP_					0	0	0		RDX|p.Y291C|1|0.19|ENSG00000137710|chr11:110254033-110254033|T/C|missense_variant	RDX|p.Y291C|1|0.19|ENSG00000137710|chr11:110254033-110254033|T/C|missense_variant	RDX|p.Y291C|1|0.19|ENSG00000137710|chr11:110254033-110254033|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.30615234375	2	530.304955	1058.59536	3.4379	0.0018232	-0.96594	-0.00051224	2.472	0.0013109	530.3043686673149	25.834	0.29889	25.834	25.684	25.983	0					11	4	3	0	0	0	0.36926	1	9060	9060		74.517	4.889	1	2307600			23466	12014	15171	15231	23800	23800					0.06840384015617929
LCNPKSVL	8	Unmodified	_LCNPKSVL_					0	0	0		nc|ENSG00000155792|Q8TB45-2|DEPTOR;ENSG00000155792|ENST00000286234|DEPTOR	nc|ENSG00000155792|Q8TB45-2|DEPTOR	nc|ENSG00000155792|Q8TB45-2|DEPTOR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2464599609375	2	437.246763	872.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.707	1	28.707	28.207	29.207	0								0	0	0	1.7419	1	8987	8987		52.299	5.5327	1				23467	5138	15172	15232	23801	23801					0.03763343996683943
LCNVPDLITI	10	Unmodified	_LCNVPDLITI_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.H353Pfs*16|1|0.31|ENSG00000119285|chr1:236595572-236595573|-/G|frameshift_variant;HEATR1|p.M758Dfs*47|1|0.08|ENSG00000119285|chr1:236583167-236583168|-/G|frameshift_variant;HEATR1|p.L334F|1|0.37|ENSG00000119285|chr1:236595630-236595630|G/A|missense_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.803466796875	2	550.804642	1099.59473	-0.34275	-0.00018879	-1.3968	-0.00076938	-1.7396	-0.00095817	550.8037822114801	19.513	0.082275	19.513	19.473	19.555	0					4	2	2	0	0	0	0.61238	1	5303	5303		14.865	0	1	85326			23468	3105	15173	15233	23802	23802					0.04891823056891553
LCPARVSV	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))PARVSV_	LC(1)PARVSV		LC(60)PARVSV		0	1	0			REV__ENST00000535372.1_1_6:160182454-160183030:-|nuORF	REV__ENST00000535372.1_1_6:160182454-160183030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2528991699219	2	451.249837	900.485122	-0.0061333	-2.7676E-06	2.6422	0.0011923	2.6361	0.0011895	451.25274436239977	26.486	0.51008	26.486	26.219	26.729	0					41	16	4	0	0	0	0.49887	1	8081	8081		60.294	6.9425	1	320940	+		23469	20098	15174	15234	23803	23803	709				0.03089862228216589
LCPGMRVLS	9	Unmodified	_LCPGMRVLS_					0	0	0			REV__ENST00000463863.5_1_3:150276179-150276254:+|nuORF	REV__ENST00000463863.5_1_3:150276179-150276254:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2584228515625	2	488.259348	974.504143	-2.9093	-0.0014205	-0.46826	-0.00022863	-3.3775	-0.0016491	488.2587322009441	24.634	0.23818	24.634	24.533	24.771	0					9	5	2	0	0	0	0.2873	1	7703	7703		51.335	0.14276	1	67381	+		23470	19399	15175	15235	23804	23804					0.01587075527606885
LCPLCRLPF	9	Unmodified	_LCPLCRLPF_					0	0	0		ENSG00000158717|ENST00000312838|RNF166	ENSG00000158717|ENST00000312838|RNF166	ENSG00000158717|ENST00000312838|RNF166	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.28662109375	2	531.285366	1060.55618	1.7214	0.00091454	1.1368	0.00060394	2.8581	0.0015185	531.2861386544104	35.463	0.47551	35.463	35.352	35.828	0					27	13	3	0	0	0	0.21116	1	13738	13738		60.294	2.064	1	605750			23471	5280	15176	15236	23805	23805					0.028322389413688143
LCPQRVWL	8	Unmodified	_LCPQRVWL_					0	0	0		ENST00000599461.1_1_19:21579980-21580034:+|nuORF	ENST00000599461.1_1_19:21579980-21580034:+|nuORF	ENST00000599461.1_1_19:21579980-21580034:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.78240966796875	2	507.781305	1013.54806	2.9751	0.0015107	-0.5544	-0.00028152	2.4207	0.0012292	507.78086030065833	33.493	0.41766	33.493	33.266	33.684	0					51	8	8	0	0	0	0.57802	1	12714	12714		52.299	2.2746	1	2838500			23472	11022	15177	15237	23806	23806					0.04182428016258655
LCPSPSPQS	9	Unmodified	_LCPSPSPQS_					0	0	0		ENST00000576487.5_1_17:7011095-7018009:-|nuORF	ENST00000576487.5_1_17:7011095-7018009:-|nuORF	ENST00000576487.5_1_17:7011095-7018009:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2154235839844	2	458.21566	914.416767	0.72201	0.00033084	-1.5357	-0.00070367	-0.81366	-0.00037283	458.21529347339646	42.238	0.15673	42.238	42.168	42.325	0					13	7	3	0	0	0	0.32741	1	16579	16579		47.916	0	1	88433			23473	10830	15178	15238	23807	23807					-0.04386427142298999
LCPTPRQP	8	Unmodified	_LCPTPRQP_					0	0	0			REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF	REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.24169921875	2	456.242012	910.469472	-1.0789	-0.00049222	-0.29089	-0.00013272	-1.3698	-0.00062494	456.2417649310188	28.496	0.96205	28.496	28.101	29.063	0					59	36	2	0	0	0	0.70055	1	9304	9304		33.516	1.5607	1	123840	+		23474	19139	15179	15239	23808	23808					0.01065575711152178
LCPYKQTAVL	10	Unmodified	_LCPYKQTAVL_					0	0	0		ENST00000366392.2_22:39129283-39129482:+|nuORF	ENST00000366392.2_22:39129283-39129482:+|nuORF	ENST00000366392.2_22:39129283-39129482:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.3104248046875	2	568.312635	1134.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.081	1	37.081	36.581	37.581	0								0	0	0	0.20542	1	13281	13281		42.396	0	1				23475	8893	15180	15240	23809	23809					0.048795292937711565
LCQFSWML	8	Unmodified	_LCQFSWML_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2415771484375	2	514.240624	1026.46669	1.3566	0.00069761	0.80129	0.00041206	2.1579	0.0011097	514.241132019462	37.544	0.36347	37.544	37.455	37.819	0					36	11	5	0	0	0	0.49887	1	14676	14676		60.294	10.269	1	1690500			23476	5669	15181	15241	23810	23810					-0.045480157379870434
LCQIVRRF	8	Unmodified	_LCQIVRRF_					0	0	0		nc|ENSG00000106034|A4D0V7-2|CPED1;CPED1|p.H927Tfs*4|2|0.25|ENSG00000106034|chr7:121271333-121271334|-/A|frameshift_variant;ENSG00000106034|ENST00000310396|CPED1	nc|ENSG00000106034|A4D0V7-2|CPED1	nc|ENSG00000106034|A4D0V7-2|CPED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7992553710938	2	517.800029	1033.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.849	1	46.849	46.349	47.349	0								0	0	0	1.7419	1	17957	17957		42.474	3.6683	1				23477	682	15182	15242	23811	23811					0.07005519281847228
LCQLGRCPE	9	2 Carbamidomethyl (C)	_LC(Carbamidomethyl (C))QLGRC(Carbamidomethyl (C))PE_	LC(1)QLGRC(1)PE		LC(44)QLGRC(44)PE		0	2	0			REV__SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	REV__SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.7651977539062	2	566.765526	1131.5165	0.23831	0.00013507	-1.0358	-0.00058708	-0.79753	-0.00045201	566.7649074658665	27.871	0.18599	27.871	27.779	27.965	0					8	4	2	0	0	0	0.37197	1	9799	9799		44.117	8.4985	1	468360	+		23478	17112	15183	15243	23812	23812	607;608				-0.04399932800015449
LCQLKKWS	8	Unmodified	_LCQLKKWS_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2832336425781	2	503.281137	1004.54772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.03	1	40.03	39.53	40.53	0								0	0	0	1.7419	1	14239	14239		38.806	5.2906	1		+		23479	17281	15184	15244	23813	23813					0.0456300829639531
LCQNPKLAL	9	Unmodified	_LCQNPKLAL_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;ENSG00000110395|ENST00000264033|CBL	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.28924560546875	2	500.28642	998.558287	0.66106	0.00033072	4.3529	0.0021777	5.0139	0.0025084	500.28918750104987	34.13	0.34716	34.13	33.959	34.306	0					18	9	3	0	0	0	0.47038	1	12705	12705		35.618	2.8059	1	162930			23480	386	15185	15245	23814	23814					0.05894990950821466
LCQRWSLL	8	Unmodified	_LCQRWSLL_					0	0	0		SECTM1|p.D143Tfs*43|1|0.19|ENSG00000141574|chr17:82322989-82322989|G/-|frameshift_variant	SECTM1|p.D143Tfs*43|1|0.19|ENSG00000141574|chr17:82322989-82322989|G/-|frameshift_variant	SECTM1|p.D143Tfs*43|1|0.19|ENSG00000141574|chr17:82322989-82322989|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.774658203125	2	509.778762	1017.54297	3.0239	0.0015415	-1.5683	-0.00079951	1.4556	0.00074203	509.77792210613393	20.12	0.16584	20.12	20.06	20.226	0					6	3	2	0	0	0	0.24915	1	6321	6321		102.77	14.13	1	2321400			23481	22381	15186	15246	23815	23815					0.034901241536317684
LCQSYSGLS	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))QSYSGLS_	LC(1)QSYSGLS		LC(57)QSYSGLS		0	1	0		ENST00000398637.9_1_12:46581896-46582007:-|nuORF	ENST00000398637.9_1_12:46581896-46582007:-|nuORF	ENST00000398637.9_1_12:46581896-46582007:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.73199462890625	2	507.731674	1013.4488	-0.61348	-0.00031148	0.65109	0.00033058	0.037619	1.9101E-05	507.732133800534	32.528	0.60009	32.528	32.342	32.942	0					58	23	3	0	0	0	0.24095	1	10950	10950		56.721	10.749	1	284430			23482	9232	15187	15247	23816	23816	382				-0.057390594591424815
LCRCIVLEL	9	Unmodified	_LCRCIVLEL_					0	0	0			REV__ENSG00000236396|ENST00000588001|SLC35G4	REV__ENSG00000236396|ENST00000588001|SLC35G4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.53277587890625	3	354.533046	1060.57731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.995	1	20.995	20.495	21.495	0								0	0	0	0.15451	1	6893	6893		58.782	0.55203	1		+		23483	17664	15188	15248	23817	23817					0.04944204250227813
LCRGDRQP	8	Unmodified	_LCRGDRQP_					0	0	0			REV__ENST00000305097.5_1_3:152553477-152553909:+|nuORF	REV__ENST00000305097.5_1_3:152553477-152553909:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7396240234375	2	472.740168	943.465783	0.59117	0.00027947	-2.1878	-0.0010342	-1.5966	-0.00075477	472.73947201043467	42.439	0.14586	42.439	42.381	42.527	0					10	7	2	0	0	0	0.5676	1	16668	16668		53.351	2.016	1	65774	+		23484	18234	15189	15249	23818	23818					-0.008210940626895535
LCRLDCIII	9	Unmodified	_LCRLDCIII_					0	0	0		ENST00000457226.2_3_9:2017124-2029149:+|nuORF	ENST00000457226.2_3_9:2017124-2029149:+|nuORF	ENST00000457226.2_3_9:2017124-2029149:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.295654296875	2	531.29593	1060.57731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.873	1	20.873	20.373	21.373	0								0	0	0	0.04624	1	5951	5951		71.296	0	1				23485	9694	15190	15250	23819	23819					0.0494420425025055
LCRWSKIV	8	Unmodified	_LCRWSKIV_					0	0	0		ENST00000404739.7_1_10:104848962-104849268:-|nuORF	ENST00000404739.7_1_10:104848962-104849268:-|nuORF	ENST00000404739.7_1_10:104848962-104849268:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7903747558594	2	502.78913	1003.56371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.177	1	24.177	23.677	24.677	0								0	0	0	1.7419	1	7498	7498		31.955	2.1133	1				23486	9272	15191	15251	23820	23820					0.06206714533300328
LCRYTPRR	8	Unmodified	_LCRYTPRR_					0	0	0		XRCC6|p.H486Pfs*12|1|0.12|ENSG00000196419|chr22:41658287-41658287|A/-|frameshift_variant;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6;ENST00000435236.2_1_X:98974480-98975440:-|nuORF	XRCC6|p.H486Pfs*12|1|0.12|ENSG00000196419|chr22:41658287-41658287|A/-|frameshift_variant;ENST00000435236.2_1_X:98974480-98975440:-|nuORF	XRCC6|p.H486Pfs*12|1|0.12|ENSG00000196419|chr22:41658287-41658287|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2884521484375	2	532.792735	1063.57092	1.7681	0.00094204	-3.4678	-0.0018476	-1.6996	-0.00090555	532.7916014852995	13.291	0.29405	13.291	13.143	13.437	0					18	6	5	0	0	0	0.72381	1	3018	3018		30.504	5.0535	1	998770			23487	7358;9522	15192	15252	23821	23821					0.041674471337273644
LCSDFIWGLA	10	Unmodified	_LCSDFIWGLA_					0	0	0		ENSG00000145214|ENST00000273814|DGKQ	ENSG00000145214|ENST00000273814|DGKQ	ENSG00000145214|ENST00000273814|DGKQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7782592773438	2	562.775885	1123.53722	3.4708	0.0019533	-0.01171	-6.5902E-06	3.4591	0.0019467	562.776080467311	44.345	0.39578	44.345	44.134	44.53	0					47	16	4	0	0	0	0.40673	1	17707	17707		55.504	4.3115	1	444590			23488	4659	15193	15253	23822	23822					-0.01961019148689047
LCSFHKFR	8	Unmodified	_LCSFHKFR_					0	0	0			REV__ENST00000531272.6_1_11:66249671-66254026:+|nuORF	REV__ENST00000531272.6_1_11:66249671-66254026:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2725219726562	2	519.271104	1036.52766	3.3565	0.0017429	-0.37993	-0.00019729	2.9766	0.0015457	519.2708529486732	17.404	0.26187	17.404	17.353	17.615	0					14	5	4	0	0	0	0.39125	1	5024	5024		71.296	2.811	1	3611800	+		23489	20058	15194	15254	23823	23823					0.010852573564534396
LCSLKFTL	8	Unmodified	_LCSLKFTL_					0	0	0		ENST00000597991.1_1_4:39482082-39482382:+|nuORF	ENST00000597991.1_1_4:39482082-39482382:+|nuORF	ENST00000597991.1_1_4:39482082-39482382:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2645263671875	2	462.764789	923.515025	-2.4389	-0.0011287	-0.67139	-0.0003107	-3.1103	-0.0014394	462.7645213028169	42.971	0.15458	42.971	42.886	43.04	0					15	9	2	0	0	0	0.59773	1	14943	14943		49.442	5.3247	1	78742			23490	11014	15195	15255	23824	23824					0.05020801173554901
LCSLVWRL	8	Unmodified	_LCSLVWRL_					0	0	0			REV__ENSG00000052749|ENST00000370992|RRP12	REV__ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2847595214844	2	495.28368	988.552807	2.832	0.0014026	-0.49688	-0.0002461	2.3351	0.0011565	495.283271478062	40.6	0.22818	40.6	40.52	40.748	0					9	5	2	0	0	0	0.66372	1	16125	16125		38.806	38.806	1	271800	+		23491	13040	15196	15256	23825	23825					0.05807312159004141
LCSPLLWR	8	Unmodified	_LCSPLLWR_					0	0	0		ENST00000497932.5_1_9:128201168-128209649:-|nuORF	ENST00000497932.5_1_9:128201168-128209649:-|nuORF	ENST00000497932.5_1_9:128201168-128209649:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.27734375	2	494.275855	986.537157	2.8044	0.0013862	-2.5577	-0.0012642	0.24676	0.00012197	494.275771263552	37.172	0.75198	37.172	36.698	37.45	0					33	15	3	0	0	0	0.60719	1	14536	14536		47.916	0	1	307070			23492	10133	15197	15257	23826	23826					0.04335025641978518
LCTFLPRQN	9	Unmodified	_LCTFLPRQN_					0	0	0			REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|40|3|sense	REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|40|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2887573242188	2	546.286951	1090.55935	1.8815	0.0010278	1.5518	0.00084775	3.4333	0.0018756	546.287874832129	16.854	0.20709	16.854	16.757	16.964	0					7	4	2	0	0	0	0.21263	1	4917	4917		35.618	0	1	454360	+		23493	21615	15198	15258	23827	23827					0.017692053197151836
LCTGRESGN	9	Unmodified	_LCTGRESGN_					0	0	0			REV__ENSG00000147223|ENST00000276173|RIPPLY1	REV__ENSG00000147223|ENST00000276173|RIPPLY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7138366699219	2	468.713816	935.413079	0.27213	0.00012755	-0.3829	-0.00017947	-0.11077	-5.1918E-05	468.71363188613697	29.209	2.1764	29.209	29.087	31.264	0					146	53	3	0	0	0	0.24095	1	10398	10398		56.721	3.7844	1	21974000	+		23494	15338	15199	15259	23828	23828					-0.057210969161587855
LCTHGGAN	8	Unmodified	_LCTHGGAN_					0	0	0			REV__nc|ENSG00000185100|Q8N142-2|ADSS1	REV__nc|ENSG00000185100|Q8N142-2|ADSS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.6743469238281	2	386.673963	771.333372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.697	1	26.697	26.197	27.197	0								0	0	0	1.7419	1	8145	8145		38.806	3.6054	1		+		23495	21158	15200	15260	23829	23829					-0.0614411879950012
LCVALTER	8	Unmodified	_LCVALTER_					0	0	0			REV__ENST00000489412.1_1_6:145956297-145956603:-|nuORF	REV__ENST00000489412.1_1_6:145956297-145956603:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7528991699219	2	452.74967	903.484787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.827	1	30.827	30.327	31.327	0								0	0	0	1.7419	1	11157	11157		83.287	5.3433	1		+		23496	19701	15201	15261	23830	23830					0.02918442508348562
LCVAVVESM	9	Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M)	_(Acetyl (Protein N-term))LC(Carbamidomethyl (C))VAVVESM(Oxidation (M))_	LC(1)VAVVESM	LCVAVVESM(1)	LC(60)VAVVESM	LCVAVVESM(60)	1	1	1		ENST00000456291.1_3_9:123636327-123638204:-|nuORF	ENST00000456291.1_3_9:123636327-123638204:-|nuORF	ENST00000456291.1_3_9:123636327-123638204:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7537841796875	2	533.251385	1064.48822	3.3937	0.0018097	0.10764	5.74E-05	3.5014	0.0018671	533.7524872041919	42.064	0.245	42.064	41.969	42.214	0					16	6	4	0	0	0	0.21116	1	16754	16754		60.294	14.322	1	188810			23497	9686	15202	15262	23831	23831	400	389			-0.041446754999469704
LCVKCRIDK	9	Unmodified	_LCVKCRIDK_					0	0	0			REV__ENST00000590325.1_1_19:13049472-13051084:+|nuORF	REV__ENST00000590325.1_1_19:13049472-13051084:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.30078125	2	539.299004	1076.58346	1.991	0.0010738	1.4368	0.00077488	3.4279	0.0018487	539.2996120616705	25.711	0.13214	25.711	25.624	25.756	0					9	3	3	0	0	0	0.2546	1	8829	8829		56.434	6.8977	1	233290	+		23498	20517	15203	15263	23832	23832					0.048227224817310343
LCVLDLQTCI	10	Unmodified	_LCVLDLQTCI_					0	0	0			REV__ENST00000318709.8_1_7:32624999-32625218:+|nuORF	REV__ENST00000318709.8_1_7:32624999-32625218:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.7906494140625	2	560.790678	1119.5668	1.7926	0.0010053	-0.84615	-0.00047452	0.94641	0.00053074	560.7901562436654	28.431	0.72671	28.431	28.291	29.018	0					49	18	5	0	0	0	0.52275	1	10255	10255		38.806	0	1	6251500	+		23499	18316	15204	15264	23833	23833					0.011801768051100225
LCVLDLQTCI	10	Unmodified	_LCVLDLQTCI_					0	0	0			REV__ENST00000318709.8_1_7:32624999-32625218:+|nuORF	REV__ENST00000318709.8_1_7:32624999-32625218:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7911987304688	2	560.790678	1119.5668	1.8125	0.0010164	-1.0288	-0.00057697	0.78362	0.00043944	560.7901201369147	28.351	0.66628	28.351	28.143	28.809	0					22	13	2	0	0	0	0.36476	1	10248	10248		30.504	8.5438	1	8029400	+		23500	18316	15204	15264	23834	23834					0.011801768051100225
LCVLWSPVL	9	Unmodified	_LCVLWSPVL_					0	0	0			REV__NPHP4|p.A1317P|1|0.38|ENSG00000131697|chr1:5864385-5864385|C/G|missense_variant	REV__NPHP4|p.A1317P|1|0.38|ENSG00000131697|chr1:5864385-5864385|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2947387695312	2	515.293714	1028.57287	0.15219	7.842E-05	2.0324	0.0010473	2.1845	0.0011257	515.2945179713963	36.192	0.21552	36.192	36.081	36.297	0					8	4	2	0	0	0	0.32741	1	14054	14054		47.916	3.3845	1	129570	+		23501	21304	15205	15265	23835	23835					0.05973063098963394
LCVNRQCKN	9	Unmodified	_LCVNRQCKN_					0	0	0		LTBP1|p.G1092R|1|0.19|ENSG00000049323|chr2:33300489-33300489|G/A|missense_variant	LTBP1|p.G1092R|1|0.19|ENSG00000049323|chr2:33300489-33300489|G/A|missense_variant	LTBP1|p.G1092R|1|0.19|ENSG00000049323|chr2:33300489-33300489|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2703857421875	2	539.268235	1076.52192	3.4223	0.0018455	0.50925	0.00027462	3.9315	0.0021202	539.2684907001573	23.854	0.21707	23.854	23.747	23.964	0					10	4	3	0	0	0	0.30951	1	8159	8159		25.45	0	1	1782700			23502	11334	15206	15266	23836	23836					-0.01328209217535914
LCVTRMRL	8	Unmodified	_LCVTRMRL_					0	0	0			REV__ENST00000275517.7_2_11:64846434-64846572:-|nuORF	REV__ENST00000275517.7_2_11:64846434-64846572:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2818603515625	2	496.280615	990.546676	2.8697	0.0014242	0.051391	2.5504E-05	2.9211	0.0014497	496.28091506861676	41.875	0.17682	41.875	41.804	41.981	0					8	5	2	0	0	0	0.41701	1	16689	16689		68.787	18.762	1	132400	+		23503	18119	15207	15267	23837	23837					0.051024706558450816
LCWAGLVVL	9	Unmodified	_LCWAGLVVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.28106689453125	2	487.280606	972.546659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.211	1	33.211	32.711	33.711	0								0	0	0	0.28056	1	10780	10780		39.021	3.4032	1				23504	11021	15208	15268	23838	23838					0.059287939275009194
LCWDGARTTL	10	Unmodified	_LCWDGARTTL_					0	0	0		ENST00000560131.1_1_15:63356108-63358095:+|nuORF	ENST00000560131.1_1_15:63356108-63358095:+|nuORF	ENST00000560131.1_1_15:63356108-63358095:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.18896484375	3	379.190336	1134.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.54	1	20.54	20.04	21.04	0								0	0	0	0.38475	1	5516	5516		35.152	3.5178	1				23505	10683	15209	15269	23839	23839					-0.012714024054957918
LCWGYYILKM	10	Unmodified	_LCWGYYILKM_					0	0	0		CERS3|p.Y317C|1|0.1|ENSG00000154227|chr15:100455942-100455942|T/C|missense_variant	CERS3|p.Y317C|1|0.1|ENSG00000154227|chr15:100455942-100455942|T/C|missense_variant	CERS3|p.Y317C|1|0.1|ENSG00000154227|chr15:100455942-100455942|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	645.326416015625	2	645.324688	1288.63482	2.9028	0.0018732	0.073239	4.7263E-05	2.976	0.0019205	645.3245572952194	40.29	0.28148	40.29	40.205	40.486	0					15	6	3	0	0	0	0.63073	1	15995	15995		30.504	0.18592	1	233830			23506	491	15210	15270	23840	23840					0.0020504645576693292
LCWLPRDQK	9	Unmodified	_LCWLPRDQK_					0	0	0		nc|ENSG00000164654|Q9NXC5-2|MIOS;MIOS|p.L817Ifs*5|1|0.38|ENSG00000164654|chr7:7605982-7605983|-/A|frameshift_variant;ENSG00000164654|ENST00000340080|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.8092651367188	2	579.808051	1157.60155	3.2509	0.0018849	-0.95378	-0.00055301	2.2972	0.0013319	579.8073994699171	20.12	0.61477	20.12	19.961	20.575	0					34	12	4	0	0	0	0.1115	1	6347	6347		76.774	76.774	1	12009000			23507	5715	15211	15271	23841	23841					0.029051807280893627
LDAASGGLLA	10	Unmodified	_LDAASGGLLA_					0	0	0		nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2449645996094	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.052	1	26.052	25.552	26.552	0								0	0	0	0.35368	1	8144	8144		42.396	1.8235	1				23508	6019	15212	15272	23842	23842					0.02821792143527091
LDAEKQAAL	9	Unmodified	_LDAEKQAAL_					0	0	0			REV__ENST00000524576.5_1_11:66203480-66233392:-|nuORF	REV__ENST00000524576.5_1_11:66203480-66233392:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.76348876953125	2	479.763832	957.513111	0.92157	0.00044214	-1.6207	-0.00077754	-0.69909	-0.0003354	479.76313459097025	22.278	0.2654	22.278	22.173	22.438	0					14	5	4	0	0	0	0.070005	1	7397	7397		88.177	9.9132	1	1379000	+		23509	16573	15213	15273	23843	23843					0.032654636892857525
LDAGVVLAR	9	Unmodified	_LDAGVVLAR_					0	0	0			REV__ENSG00000113396|ENST00000262462|SLC27A6	REV__ENSG00000113396|ENST00000262462|SLC27A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2765808105469	2	457.276909	912.539266	-0.39524	-0.00018074	-0.10614	-4.8534E-05	-0.50138	-0.00022927	457.2768805792693	32.351	0.20166	32.351	32.271	32.473	0					12	8	2	0	0	0	0.51817	1	10453	10453		30.504	1.3541	1	138110	+		23510	14039	15214	15274	23844	23844					0.07949777651424483
LDAHCSIR	8	Unmodified	_LDAHCSIR_					0	0	0			REV__nc|ENSG00000064655|O00167-3|EYA2	REV__nc|ENSG00000064655|O00167-3|EYA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7321472167969	2	457.729269	913.443985	0.72238	0.00033065	2.6326	0.001205	3.355	0.0015357	457.7318893159622	31.833	0.67752	31.833	31.513	32.191	0					41	14	5	0	0	0	0.65276	1	11997	11997		40.573	1.7665	1	518510	+		23511	13107	15215	15275	23845	23845					-0.01619898811281928
LDAKLRVTK	9	Unmodified	_LDAKLRVTK_					0	0	0		CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant;ENSG00000165813|ENST00000369287|CCDC186	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.3325805664062	2	522.332216	1042.64988	1.0571	0.00055217	-0.17574	-9.1797E-05	0.88138	0.00046037	522.3320355142715	24.865	0.21162	24.865	24.762	24.974	0					10	4	3	0	0	0	0.087861	1	8763	8763		82.241	2.7514	1	734450			23512	404	15216	15276	23846	23846					0.1302599763962462
LDARRGIGH	9	Unmodified	_LDARRGIGH_					0	0	0			REV__ENST00000585858.1_1_19:11038634-11039324:-|nuORF	REV__ENST00000585858.1_1_19:11038634-11039324:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7823181152344	2	497.780682	993.546811	0.17637	8.7792E-05	1.278	0.00063615	1.4544	0.00072395	497.78162699513217	23.347	0.54094	23.347	23.033	23.574	0					30	12	5	0	0	0	0.50858	1	7083	7083		24.203	7.4978	1	400630	+		23513	20478	15217	15277	23847	23847					0.04977929971710182
LDAVLKNQL	9	Unmodified	_LDAVLKNQL_					0	0	0			REV__ENST00000343267.7_1_3:195295585-195295624:-|nuORF	REV__ENST00000343267.7_1_3:195295585-195295624:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.3029479980469	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.549	1	40.549	40.049	41.049	0								0	0	0	0.22284	1	15459	15459		47.657	1.6851	1		+		23514	18466	15218	15278	23848	23848					0.08590315994376851
LDAYPILNQ	9	Unmodified	_LDAYPILNQ_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7783203125	2	523.779482	1045.54441	0.49146	0.00025742	-3.2324	-0.0016931	-2.741	-0.0014357	523.7778010487863	33.608	0.16698	33.608	33.5	33.667	0					5	3	2	0	0	0	0.48389	1	12807	12807		34.173	2.6427	1	146040			23515	967	15219	15279	23849	23849					0.02346036723361067
LDCAHTAASF	10	Unmodified	_LDCAHTAASF_					0	0	0		ENST00000336812.4_1_4:24586045-24586090:-|nuORF	ENST00000336812.4_1_4:24586045-24586090:-|nuORF	ENST00000336812.4_1_4:24586045-24586090:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2322998046875	2	518.231842	1034.44913	1.5715	0.0008144	-1.7029	-0.00088249	-0.13138	-6.8086E-05	518.2311810168268	25.704	0.88377	25.704	25.492	26.376	0					48	16	4	0	0	0	0.30737	1	9092	9092		66.429	2.222	1	2421300			23516	8699	15220	15280	23850	23850					-0.06671639739329294
LDCCHRLI	8	Unmodified	_LDCCHRLI_					0	0	0			REV__ENSG00000223601|ENST00000422359|EBLN1	REV__ENSG00000223601|ENST00000422359|EBLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.74261474609375	2	486.741322	971.468092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.883	1	34.883	34.383	35.383	0								0	0	0	1.7419	1	13415	13415		68.485	5.1784	1		+		23517	17618	15221	15281	23851	23851					-0.01878381649248695
LDDFLLTY	8	Unmodified	_LDDFLLTY_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2536926269531	2	500.255308	998.496064	0.38232	0.00019126	-0.61808	-0.0003092	-0.23576	-0.00011794	500.25319113522164	25.1	0.17409	25.1	24.987	25.161	0					16	5	4	0	0	0	0.52345	1	7512	7512		57.811	11.045	1	238780			23518	4064	15222	15282	23852	23852					-0.0032445691651901143
LDDFLLTY	8	Unmodified	_LDDFLLTY_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.25274658203125	2	500.255308	998.496064	0.15473	7.7403E-05	-1.05	-0.00052526	-0.89526	-0.00044786	500.2531433364062	25.21	0.18219	25.21	25.128	25.31	0					12	4	4	0	0	0	0.64096	1	7975	7975		42.474	0	1	253650			23519	4064	15222	15282	23853	23853					-0.0032445691651901143
LDDNEALIEK	10	Unmodified	_LDDNEALIEK_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54;ENST00000553923.1_1_14:35483969-35488318:+|nuORF	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	387.201171875	3	387.199554	1158.57683	-1.1927	-0.00046181	2.1617	0.00083702	0.96903	0.00037521	387.2003932893834	18.38	0.10956	18.38	18.308	18.418	0					11	4	3	0	0	0	0.61238	1	4779	4779		32.751	5.7032	1	95715			23520	2070	15223	15283	23854	23854					0.0038877933573076007
LDDRSSPF	8	Unmodified	_LDDRSSPF_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7241516113281	2	468.724707	935.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.717	1	41.717	41.217	42.217	0								0	0	0	1.7419	1	16611	16611		40.573	1.5511	1		+		23521	12884	15224	15284	23855	23855					-0.03543968895939997
LDEDDQLGL	9	Unmodified	_LDEDDQLGL_					0	0	0			REV__nc|ENSG00000187091|P51178-2|PLCD1	REV__nc|ENSG00000187091|P51178-2|PLCD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2403564453125	2	509.240386	1016.46622	-0.10719	-5.4584E-05	0.22794	0.00011608	0.12076	6.1493E-05	509.2407622037758	26.816	0.81887	26.816	26.68	27.499	0					72	29	5	0	0	0	0.54267	1	8440	8440		27.882	4.8398	1	3108300	+		23522	21161	15225	15285	23856	23856					-0.041354406525101695
LDEDVTLR	8	Unmodified	_LDEDVTLR_					0	0	0			REV__nc|ENSG00000119698|Q6NUP7-2|PPP4R4	REV__nc|ENSG00000119698|Q6NUP7-2|PPP4R4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7530517578125	2	480.753464	959.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.869	1	26.869	26.369	27.369	0								0	0	0	1.7419	1	8217	8217		31.955	1.4512	1		+		23523	14250	15226	15286	23857	23857					0.011008733096332435
LDEEEKKN	8	Unmodified	_LDEEEKKN_					0	0	0			REV__nc|ENSG00000136738|Q92783-2|STAM	REV__nc|ENSG00000136738|Q92783-2|STAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7492980957031	2	502.748379	1003.4822	0.13544	6.8091E-05	0.56769	0.00028541	0.70313	0.0003535	502.74868434773373	27.138	0.16641	27.138	27.052	27.219	0					7	4	2	0	0	0	0.37378	1	8845	8845		73.975	2.679	1	104990	+		23524	14877	15227	15287	23858	23858					-0.01939734415611838
LDEETQYQ	8	Unmodified	_LDEETQYQ_					0	0	0		nc|ENSG00000134758|Q8WVD3-2|RNF138;ENSG00000134758|ENST00000261593|RNF138	nc|ENSG00000134758|Q8WVD3-2|RNF138	nc|ENSG00000134758|Q8WVD3-2|RNF138	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2232055664062	2	513.224736	1024.43492	0.01269	6.5129E-06	-3.9776	-0.0020414	-3.9649	-0.0020349	513.2227948854269	33.169	0.29322	33.169	33.046	33.339	0					18	8	3	0	0	0	0.73426	1	12226	12226		29.15	1.2673	1	382980			23525	3939	15228	15288	23859	23859					-0.07632013686611572
LDEGAKLLY	9	Unmodified	_LDEGAKLLY_					0	0	0		nc|ENSG00000022556|Q9NX02-5|NLRP2;NLRP2|p.N1038Tfs*4|2|0.38|ENSG00000022556|chr19:55000816-55000816|A/-|frameshift_variant;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;ENST00000381637.3_1_19:55501058-55501561:+|nuORF	nc|ENSG00000022556|Q9NX02-5|NLRP2	nc|ENSG00000022556|Q9NX02-5|NLRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.28173828125	2	511.281857	1020.54916	-0.38074	-0.00019467	0.28908	0.0001478	-0.091668	-4.6868E-05	511.2820972185038	29.68	0.21901	29.68	29.565	29.784	0					16	8	3	0	0	0	0.20551	1	9677	9677		60.972	0.67798	1	145380			23526	1111	15229	15289	23860	23860					0.03970920866140659
LDEKEEATL	9	Unmodified	_LDEKEEATL_					0	0	0			REV__ENSG00000185946|ENST00000423855|RNPC3	REV__ENSG00000185946|ENST00000423855|RNPC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2684326171875	2	524.263862	1046.51317	3.4296	0.001798	-4.3492	-0.0022801	-0.91966	-0.00048215	524.2615711228872	31.795	0.26834	31.795	31.633	31.902	0					11	5	3	0	0	0	0.13726	2	11889	11889;11934		70.816	12.586	1	1562600	+		23527	17056	15230	15290	23861;23862	23861					-0.008225811013744533
LDEKHLIE	8	Unmodified	_LDEKHLIE_					0	0	0			REV__nc|ENSG00000104892|Q6P597-2|KLC3	REV__nc|ENSG00000104892|Q6P597-2|KLC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7762756347656	2	498.771657	995.528761	0.17044	8.5008E-05	-0.68464	-0.00034148	-0.5142	-0.00025647	498.7717669851362	28.151	0.58073	28.151	28.032	28.613	0					30	14	3	0	0	0	0.46013	1	9400	9400		44.117	0	1	206470	+		23528	13745	15231	15291	23863	23863					0.03081750206331435
LDELKLAVA	9	Unmodified	_LDELKLAVA_					0	0	0		nc|ENSG00000070985|Q9NZQ8-3|TRPM5;ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2923583984375	2	486.292225	970.569897	-0.23965	-0.00011654	0.22785	0.0001108	-0.011797	-5.7367E-06	486.2926011367494	34.331	0.24224	34.331	34.227	34.47	0					19	8	3	0	0	0	0.13267	1	12196	12196		71.877	7.6702	1	65454			23529	1464	15232	15292	23864	23864					0.08343511245800528
LDESLQKKA	9	Unmodified	_LDESLQKKA_					0	0	0		ENSG00000121207|ENST00000336356|LRAT	ENSG00000121207|ENST00000336356|LRAT	ENSG00000121207|ENST00000336356|LRAT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2901611328125	2	516.290214	1030.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.235	1	39.235	38.735	39.735	0								0	0	0	0.21054	1	15489	15489		49.442	3.4896	1				23530	3215	15233	15293	23865	23865					0.05181421752104143
LDETVSDLY	9	Unmodified	_LDETVSDLY_					0	0	0			REV__FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant	REV__FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.751953125	2	527.750587	1053.48662	-1.1948	-0.00063053	4.1233	0.0021761	2.9285	0.0015455	527.7526288074071	23.623	0.20487	23.623	23.542	23.747	0					7	5	2	0	0	0	0.51817	1	7239	7239		30.504	1.3541	1	74534	+		23531	13315	15234	15294	23866	23866					-0.03798269992716996
LDEVKRTLA	9	Unmodified	_LDEVKRTLA_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8063354492188	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.122	1	26.122	25.622	26.622	0								0	0	0	0.23445	1	9189	9189		45.972	5.9141	1				23532	3458	15235	15295	23867	23867					0.07745414506075576
LDEVRKLEG	9	Unmodified	_LDEVRKLEG_					0	0	0			REV__ENSG00000224470|ENST00000427980|ATXN1L	REV__ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7959594726562	2	529.795663	1057.57677	1.7348	0.00091908	-1.0805	-0.00057245	0.65426	0.00034663	529.7951305311095	37.422	0.27164	37.422	37.296	37.567	0					13	8	2	0	0	0	0.36892	1	14643	14643		44.377	1.5129	1	300290	+		23533	17624	15236	15296	23868	23868					0.05028824126384279
LDEVRKLEG	9	Unmodified	_LDEVRKLEG_					0	0	0			REV__ENSG00000224470|ENST00000427980|ATXN1L	REV__ENSG00000224470|ENST00000427980|ATXN1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7959594726562	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.369	1	37.369	36.869	37.869	0								0	0	0	0.15687	1	14604	14604		58.23	4.8785	1		+		23534	17624	15236	15296	23869	23869					0.05028824126384279
LDFADPQGSTI	11	Unmodified	_LDFADPQGSTI_					0	0	0		nc|ENSG00000178522|Q9NP70-2|AMBN;ENSG00000178522|ENST00000322937|AMBN	nc|ENSG00000178522|Q9NP70-2|AMBN	nc|ENSG00000178522|Q9NP70-2|AMBN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.2808837890625	2	582.282586	1162.55062	-1.7039	-0.00099216	-1.0561	-0.00061496	-2.76	-0.0016071	582.2819377372824	21.383	0.25133	21.383	21.278	21.529	0					12	5	3	0	0	0	0.29191	1	6174	6174		63.534	3.4156	1	944600			23535	6719	15237	15297	23870	23870					-0.02415489835743756
LDFKNSLI	8	Unmodified	_LDFKNSLI_					0	0	0			REV__SCN2A|p.V406Cfs*24|1|0.24|ENSG00000136531|chr2:165313934-165313935|-/T|frameshift_variant	REV__SCN2A|p.V406Cfs*24|1|0.24|ENSG00000136531|chr2:165313934-165313935|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.27166748046875	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.515	1	44.515	44.015	45.015	0								0	0	0	1.7419	1	16677	16677		42.396	0	1		+		23536	21493	15238	15298	23871	23871					0.051709555572983845
LDGAQIPR	8	Unmodified	_LDGAQIPR_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2453308105469	2	435.245609	868.476666	-3.0121	-0.001311	1.667	0.00072557	-1.3451	-0.00058544	435.2465299775506	33.59	0.15848	33.59	33.521	33.679	0					8	4	3	0	0	0	0.66095	1	11818	11818		39.253	2.0937	1	79651			23537	6178	15239	15299	23872	23872					0.037166315832337204
LDGDTRGGA	9	Unmodified	_LDGDTRGGA_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.2051086425781	2	431.206681	860.398809	-0.8354	-0.00036023	-2.7221	-0.0011738	-3.5575	-0.001534	431.2055596108881	24.251	0.29276	24.251	24.089	24.382	0					13	9	2	0	0	0	0.37197	1	7421	7421		44.117	0.49075	1	52625			23538	23056	15240	15300	23873	23873					-0.036974260728015906
LDGEAGCPP	9	Unmodified	_LDGEAGCPP_					0	0	0		ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF;nc|ENSG00000140983|Q8IXI1-2|RHOT2;ENST00000568636.5_1_16:720150-721765:+|nuORF;ENST00000602564.5_1_16:719540-721765:+|nuORF	ENST00000567017.5_1_16:718199-721765:+|nuORF	ENST00000567017.5_1_16:718199-721765:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.6871032714844	2	429.686736	857.358918	-0.57118	-0.00024543	0.77064	0.00033113	0.19946	8.5704E-05	429.6871193587206	42.754	0.59547	42.754	42.64	43.235	0					40	30	2	0	0	0	0.61124	1	16167	16167		19.36	1.0356	1	75520			23539	10766	15241	15301	23874	23874					-0.07546689067737589
LDGGARIHHY	10	Unmodified	_LDGGARIHHY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.1965026855469	3	380.19659	1137.56794	0.8225	0.00031271	-0.84451	-0.00032108	-0.022008	-8.3672E-06	380.19618916063285	22.212	0.36547	22.212	22.119	22.485	0					15	8	2	0	0	0	0.54197	1	7174	7174		53.089	0	1	2198900			23540	5134;11594	15242	15302	23875	23875					0.004658952805812078
LDGGKELKI	9	Unmodified	_LDGGKELKI_					0	0	0		nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7900695800781	2	486.78985	971.565146	-1.2421	-0.00060465	1.1842	0.00057643	-0.057969	-2.8219E-05	486.7904783926829	36.998	0.17452	36.998	36.945	37.119	0					12	9	2	0	0	0	0.38666	1	12527	12527		42.864	0.46813	1	57688			23541	11812	15243	15303	23876	23876					0.07822627103041668
LDGKLRFTAK	10	Unmodified	_LDGKLRFTAK_					0	0	0		ENST00000421407.1_1:144593821-144594396:+|nuORF;ENST00000429694.1_1:144593815-144598517:+|nuORF	ENST00000421407.1_1:144593821-144594396:+|nuORF	ENST00000421407.1_1:144593821-144594396:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.7359619140625	2	574.842948	1147.67134	-0.20468	-0.00011766	0.78734	0.0004526	0.58266	0.00033494	574.8434296985729	18.181	0.16942	18.181	18.072	18.241	0					5	3	2	0	0	0	0.74178	1	5502	5502		14.865	0.72775	1	532030			23542	9400	15244	15304	23877	23877					0.1034138266836635
LDGPCPNGP	9	Unmodified	_LDGPCPNGP_					0	0	0			REV__ENSG00000127252|ENST00000264735|PLAAT1	REV__ENSG00000127252|ENST00000264735|PLAAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.1954650878906	2	435.194728	868.374903	-0.42836	-0.00018642	1.4869	0.00064708	1.0585	0.00046066	435.1954334311007	31.6	0.21644	31.6	31.479	31.696	0					12	5	3	0	0	0	0.45358	1	11514	11514		37.159	1.9584	1	212850	+		23543	14484	15245	15305	23878	23878					-0.06454982830837253
LDGPFERLDI	10	Unmodified	_LDGPFERLDI_					0	0	0			REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant	REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.2082824707031	3	392.208273	1173.60299	-1.2415	-0.00048694	1.3349	0.00052357	0.093376	3.6623E-05	392.20874109877604	27.679	0.21563	27.679	27.585	27.8	0					12	7	2	0	0	0	0.65213	1	8841	8841		47.96	47.96	1	550080	+		23544	16563	15246	15306	23879	23879					0.023130932978574492
LDHIKDLA	8	Unmodified	_LDHIKDLA_					0	0	0			REV__tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	REV__tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.76043701171875	2	462.761092	923.507631	-0.71469	-0.00033073	-0.13106	-6.0648E-05	-0.84575	-0.00039138	462.76112044690666	34.912	0.19342	34.912	34.8	34.993	0					10	5	2	0	0	0	0.70598	1	13038	13038		32.812	2.3088	1	134210	+		23545	21806	15247	15307	23880	23880					0.04281784897455054
LDHKLAEVS	9	Unmodified	_LDHKLAEVS_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2790222167969	2	506.277106	1010.53966	2.9372	0.001487	0.81666	0.00041346	3.7539	0.0019005	506.27764662447447	40.174	0.5439	40.174	40.034	40.578	0					29	11	4	0	0	0	0.14603	1	15918	15918		68.787	2.3575	1	892590			23546	7188	15248	15308	23881	23881					0.03481152580627622
LDHLAEKF	8	Unmodified	_LDHLAEKF_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.8431091308594	3	324.843154	971.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.019	1	29.019	28.519	29.519	0								0	0	0	1.7419	1	10318	10318		71.877	13.096	1				23547	3641;1482	15249	15309	23882	23882					0.020737848974818007
LDHLLRFH	8	Unmodified	_LDHLLRFH_					0	0	0		ENST00000498873.5_1_4:120419020-120434055:+|nuORF	ENST00000498873.5_1_4:120419020-120434055:+|nuORF	ENST00000498873.5_1_4:120419020-120434055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2908325195312	2	525.795801	1049.57705	0.97663	0.00051351	-2.5486	-0.00134	-1.5719	-0.00082652	525.7943718358972	25.881	0.59498	25.881	25.506	26.101	0					17	10	3	0	0	0	0.59411	1	9171	9171		50.025	5.9077	1	1476000			23548	10139	15250	15310	23883	23883					0.05424288636891106
LDHPIVSVK	9	Unmodified	_LDHPIVSVK_					0	0	0			REV__ENSG00000165959|ENST00000298912|CLMN	REV__ENSG00000165959|ENST00000298912|CLMN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2979431152344	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.98	1	45.98	45.48	46.48	0								0	0	0	0.29774	1	17733	17733		35.618	0	1		+		23549	16077	15251	15311	23884	23884					0.07810333339944009
LDIAGLAAV	9	Unmodified	_LDIAGLAAV_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7526550292969	2	421.752736	841.490919	0.85042	0.00035867	-1.0502	-0.00044293	-0.19978	-8.4258E-05	421.7523243510332	37.101	0.53185	37.101	36.705	37.237	0					18	16	2	0	0	0	0.32741	1	14496	14496		47.916	0	1	95282			23550	1232	15252	15312	23885	23885					0.06383284011519663
LDIIPCAIS	9	Unmodified	_LDIIPCAIS_					0	0	0		KIF26B|p.G567D|1|0.28|ENSG00000162849|chr1:245609314-245609314|G/A|missense_variant	KIF26B|p.G567D|1|0.28|ENSG00000162849|chr1:245609314-245609314|G/A|missense_variant	KIF26B|p.G567D|1|0.28|ENSG00000162849|chr1:245609314-245609314|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.76153564453125	2	472.759704	943.504854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.297	1	22.297	21.797	22.797	0								0	0	0	0.3368	1	6281	6281		27.882	3.3631	1				23551	11255	15253	15313	23886	23886					0.03084193448307815
LDILEPKKN	9	Unmodified	_LDILEPKKN_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.21185302734375	3	357.213246	1068.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.976	1	28.976	28.476	29.476	0								0	0	0	0.37786	1	10299	10299		17.468	1.8262	1		+		23552	12863	15254	15314	23887	23887					0.08634585165850694
LDIMPLTL	8	Oxidation (M)	_LDIM(Oxidation (M))PLTL_		LDIM(1)PLTL		LDIM(68)PLTL	0	0	1		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2632751464844	2	466.262079	930.509605	2.63	0.0012263	0.82933	0.00038668	3.4593	0.0016129	466.26240987072913	30.806	0.4604	30.806	30.697	31.157	0					18	9	2	0	0	0	0.41952	1	11435	11435		68.485	68.485	1	1599300			23553	1821	15255	15315	23888	23888		82			0.04157077591059988
LDISYKSNH	9	Unmodified	_LDISYKSNH_					0	0	0		L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|49|3|anti-sense	L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|49|3|anti-sense	L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|49|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7737426757812	2	538.772188	1075.52982	2.197	0.0011837	2.0224	0.0010896	4.2194	0.0022733	538.7726525184758	26.661	0.15527	26.661	26.565	26.721	0					5	3	2	0	0	0	0.53083	1	8627	8627		29.15	2.4566	1	81162			23554	11277	15256	15316	23889	23889					-0.0049203542478153395
LDITAPNKN	9	Unmodified	_LDITAPNKN_					0	0	0		tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.26898193359375	2	493.269281	984.52401	-0.61179	-0.00030178	0.254	0.00012529	-0.35779	-0.00017649	493.2693494566486	24.203	0.66675	24.203	23.78	24.447	0					29	13	3	0	0	0	0.3269	1	8251	8251		40.778	0	1	303830			23555	22584	15257	15317	23890	23890					0.03112866063565889
LDIVRIEL	8	Unmodified	_LDIVRIEL_					0	0	0			REV__ENSG00000134760|ENST00000257192|DSG1	REV__ENSG00000134760|ENST00000257192|DSG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.79974365234375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.611	1	40.611	40.111	41.111	0								0	0	0	1.7419	1	16005	16005		35.618	5.1146	1		+		23556	14761	15258	15318	23891	23891					0.09987217482705546
LDIWASLLS	9	Unmodified	_LDIWASLLS_					0	0	0		ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2828674316406	2	509.2844	1016.55425	-0.40423	-0.00020587	-3.1874	-0.0016233	-3.5916	-0.0018291	509.2826450629472	30.716	0.23725	30.716	30.617	30.854	0					7	5	2	0	0	0	0.2873	1	11500	11500		51.335	0	1	147900			23557	2378	15259	15319	23892	23892					0.04663224728756177
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7760925292969	2	436.776211	871.537869	0.23696	0.0001035	0.38687	0.00016898	0.62384	0.00027248	436.7763636592317	37.108	0.17483	37.108	37.048	37.223	0					14	9	2	0	0	0	0.46013	1	12152	12152		64.207	3.2353	1	89537			23558	4928	15260	15320	23893	23893					0.09696143562666748
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7761535644531	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.18	1	37.18	36.68	37.68	0								0	0	0	1.7419	1	12578	12578		45.972	0.020292	1				23559	4928	15260	15320	23894	23894					0.09696143562666748
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7758483886719	2	436.776211	871.537869	0.75403	0.00032934	-1.1176	-0.00048815	-0.36359	-0.00015881	436.77560684894854	37.39	0.33527	37.39	37.262	37.598	0					15	10	2	0	0	0	0.23895	1	14625	14625		134.81	17.907	1	279980			23560	4928	15260	15320	23895	23895					0.09696143562666748
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7763671875	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.149	1	37.149	36.649	37.649	0								0	0	0	1.7419	1	13304	13304		90.37	10.919	1				23561	4928	15260	15320	23896	23896					0.09696143562666748
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.77618408203125	2	436.776211	871.537869	-0.55283	-0.00024146	0.20855	9.1088E-05	-0.34428	-0.00015038	436.77629378638204	37.323	0.31366	37.323	37.171	37.484	0					13	6	3	0	0	0	0.23635	1	14593	14593		118.74	22.553	1	483850			23562	4928	15260	15320	23897	23897					0.09696143562666748
LDKIVHYL	8	Unmodified	_LDKIVHYL_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1;SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.793212890625	2	500.794935	999.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.936	1	26.936	26.436	27.436	0								0	0	0	1.7419	1	8246	8246		21.702	2.5988	1				23563	5962	15261	15321	23898	23898					0.07551234828270026
LDKKEPEVL	9	Unmodified	_LDKKEPEVL_					0	0	0		ENST00000401087.3_3_1:149089877-149094694:-|nuORF	ENST00000401087.3_3_1:149089877-149094694:-|nuORF	ENST00000401087.3_3_1:149089877-149094694:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.80859375	2	535.808239	1069.60193	2.1834	0.0011699	-1.2236	-0.00065559	0.95986	0.0005143	535.8077692240533	25.25	0.2394	25.25	25.148	25.388	0					11	5	3	0	0	0	0.054723	1	8617	8617		67.494	12.717	1	392980			23564	9250	15262	15322	23899	23899					0.06990878928968414
LDKKEPQQ	8	Unmodified	_LDKKEPQQ_					0	0	0			REV__TTBK2|p.P697H|1|0.19|ENSG00000128881|chr15:42753156-42753156|G/T|missense_variant	REV__TTBK2|p.P697H|1|0.19|ENSG00000128881|chr15:42753156-42753156|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2685852050781	2	493.269281	984.52401	-0.12896	-6.3612E-05	0.25203	0.00012432	0.12307	6.0705E-05	493.2694055053482	24.016	0.42411	24.016	23.751	24.175	0					18	14	2	0	0	0	0.70646	1	6956	6956		37.812	2.1932	1	68605	+		23565	14530	15263	15323	23900	23900					0.031128660635772576
LDKKNVSND	9	Unmodified	_LDKKNVSND_					0	0	0			REV__ENSG00000198146|ENST00000356321|ZNF770	REV__ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2696533203125	2	516.769645	1031.52474	0.2017	0.00010423	-1.8879	-0.00097563	-1.6862	-0.0008714	516.7687739470946	33.752	0.42116	33.752	33.6	34.021	0					17	9	2	0	0	0	0.095583	1	12886	12886		80.455	9.1589	1	171500	+		23566	17384	15264	15324	23901	23901					0.010236607126216768
LDKKSVQL	8	Unmodified	_LDKKSVQL_					0	0	0			REV__THAP9|p.R152Dfs*5|1|0.05|ENSG00000168152|chr4:82906495-82906495|A/-|frameshift_variant	REV__THAP9|p.R152Dfs*5|1|0.05|ENSG00000168152|chr4:82906495-82906495|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7845764160156	2	465.784567	929.554582	-0.86645	-0.00040358	0.83119	0.00038716	-0.035259	-1.6423E-05	465.7848149497207	13.569	0.056341	13.569	13.534	13.59	0					6	3	2	0	0	0	0.48092	1	2809	2809		62.107	5.3864	1	66183	+		23567	21638	15265	15325	23902	23902					0.08698644448622872
LDKLSASKI	9	Unmodified	_LDKLSASKI_					0	0	0			REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.78857421875	2	487.797675	973.580796	-0.081234	-3.9626E-05	-0.59785	-0.00029163	-0.67908	-0.00033125	487.7975128867571	22.372	0.1151	22.372	22.269	22.384	0					6	2	3	0	0	0	0.30841	1	7532	7532		49.536	10.283	1	158100	+		23568	15444	15266	15326	23903	23903					0.0929491362007866
LDKMITRN	8	Unmodified	_LDKMITRN_					0	0	0		ENST00000486882.5_1_1:79093429-79094083:+|nuORF;nc|ENSG00000137959|Q53G44-2|IFI44L;ENSG00000137959|ENST00000370751|IFI44L	ENST00000486882.5_1_1:79093429-79094083:+|nuORF	ENST00000486882.5_1_1:79093429-79094083:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2660827636719	2	495.773677	989.5328	-0.67201	-0.00033317	-2.7421	-0.0013595	-3.4141	-0.0016926	495.77245138822116	23.692	0.56269	23.692	23.585	24.147	0					31	11	5	0	0	0	0.72381	1	8057	8057		30.504	0	1	22164000			23569	10029	15267	15327	23904	23904					0.03761516428392042
LDKRLLPE	8	Unmodified	_LDKRLLPE_					0	0	0		nc|ENSG00000108375|Q68DV7-3|RNF43;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43	nc|ENSG00000108375|Q68DV7-3|RNF43	nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.29766845703125	2	492.297842	982.581131	-0.54835	-0.00026995	0.37508	0.00018465	-0.17328	-8.5304E-05	492.29811960678165	37.818	0.5283	37.818	37.383	37.911	0					36	16	3	0	0	0	0.29286	1	14376	14376		84.916	5.4645	1	789960			23570	525	15268	15328	23905	23905					0.08914333339942004
LDKVIEIV	8	Unmodified	_LDKVIEIV_					0	0	0		CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant	CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7890625	2	464.789318	927.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.186	1	41.186	40.686	41.686	0								0	0	0	1.7419	1	16197	16197		55.504	0	1				23571	709	15269	15329	23906	23906					0.09740412734129222
LDLAAGGKI	9	Unmodified	_LDLAAGGKI_					0	0	0			REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2578125	2	429.258185	856.501818	0.81768	0.000351	-1.375	-0.00059023	-0.55732	-0.00023923	429.25753376962166	29.504	0.3016	29.504	29.364	29.666	0					15	7	3	0	0	0	0.087861	1	10546	10546		82.241	2.5279	1	818100	+		23572	12729	15270	15330	23907	23907					0.0678268638581585
LDLEEKAHL	9	Unmodified	_LDLEEKAHL_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2904052734375	2	534.290214	1066.56587	0.15906	8.4985E-05	0.60237	0.00032184	0.76144	0.00040683	534.2904679425016	37.791	0.24953	37.791	37.662	37.911	0					24	8	4	0	0	0	0.33044	1	14377	14377		47.657	1.6851	1	989510	+		23573	14839	15271	15331	23908	23908					0.03525421752101465
LDLESALPTQ	10	Unmodified	_LDLESALPTQ_					0	0	0			REV__nc|ENSG00000163939|Q86U86-5|PBRM1	REV__nc|ENSG00000163939|Q86U86-5|PBRM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7867431640625	2	543.787504	1085.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.44	1	11.44	10.94	11.94	0								0	0	0	0.4162	1	2222	2222		25.574	2.5316	1		+		23574	15940	15272	15332	23909	23909					0.021096981696246075
LDLGVTLR	8	Unmodified	_LDLGVTLR_					0	0	0		SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant;ENST00000508892.5_1_17:48190259-48195083:-|nuORF;ENSG00000167100|ENST00000330175|SAMD14;nc|ENSG00000167100|Q8IZD0-2|SAMD14	SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant	SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7719421386719	2	443.77146	885.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.624	1	43.624	43.124	44.124	0								0	0	0	1.7419	1	17048	17048		40.778	3.6191	1				23575	5968	15273	15333	23910	23910					0.08102375277144347
LDLKATQAL	9	Unmodified	_LDLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.78961181640625	2	486.78985	971.565146	-0.31093	-0.00015136	0.019237	9.3641E-06	-0.2917	-0.000142	486.78978164157445	37.243	0.22728	37.243	37.131	37.358	0					10	6	2	0	0	0	0.037712	1	14099	14099		101.46	26.417	1	228140			23576	5432	15274	15334	23911	23911					0.07822627103018931
LDLKATQAL	9	Unmodified	_LDLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7899169921875	2	486.78985	971.565146	0.63771	0.00031043	-0.64627	-0.0003146	-0.0085688	-4.1712E-06	486.7895782983721	37.229	0.21714	37.229	37.087	37.304	0					15	6	3	0	0	0	0.063171	1	14540	14540		90.601	8.3603	1	472640			23577	5432	15274	15334	23912	23912					0.07822627103018931
LDLKATQAL	9	Unmodified	_LDLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7892761230469	2	486.78985	971.565146	-2.9122	-0.0014176	1.996	0.00097163	-0.91615	-0.00044597	486.7905828444679	36.977	0.11168	36.977	36.94	37.052	0					7	4	2	0	0	0	0.12834	1	13251	13251		72.879	10.772	1	72573			23578	5432	15274	15334	23913	23913					0.07822627103018931
LDLKTILV	8	Unmodified	_LDLKTILV_					0	0	0		LINGO2|p.F564Lfs*32|1|0.12|ENSG00000174482|chr9:27948980-27948980|A/-|frameshift_variant;LINGO2|p.M605*|1|0.27|ENSG00000174482|chr9:27948859-27948859|T/-|frameshift_variant;ENSG00000174482|ENST00000698399|LINGO2	LINGO2|p.F564Lfs*32|1|0.12|ENSG00000174482|chr9:27948980-27948980|A/-|frameshift_variant	LINGO2|p.F564Lfs*32|1|0.12|ENSG00000174482|chr9:27948980-27948980|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7992858886719	2	457.799686	913.584819	0.87919	0.0004025	-1.4173	-0.00064882	-0.53807	-0.00024633	457.7989258043015	41.053	0.18871	41.053	40.926	41.115	0					8	4	2	0	0	0	0.41701	1	16302	16302		68.787	1.2932	1	153820			23579	6491	15275	15335	23914	23914					0.1245700311382052
LDLLKEER	8	Unmodified	_LDLLKEER_					0	0	0		tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2689514160156	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.052	1	22.052	21.552	22.552	0								0	0	0	1.7419	1	6175	6175		23.042	1.3402	1				23580	22752	15276	15336	23915	23915					0.06425725614712974
LDLMSVSK	8	Unmodified	_LDLMSVSK_					0	0	0			REV__SYNGAP1|p.F979Ifs*5|1|0.67|ENSG00000197283|chr6:33443481-33443482|-/C|frameshift_variant	REV__SYNGAP1|p.F979Ifs*5|1|0.67|ENSG00000197283|chr6:33443481-33443482|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.7442321777344	2	446.744053	891.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.482	1	33.482	32.982	33.982	0								0	0	0	1.7419	1	11755	11755		35.618	0	1		+		23581	17324	15277	15337	23916	23916					0.023476204142184542
LDLMTLNVL	9	Unmodified	_LDLMTLNVL_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.294189453125	2	516.293911	1030.57327	1.244	0.00064228	-1.2427	-0.00064159	0.0013179	6.8043E-07	516.2935445935074	37.331	0.43353	37.331	37.179	37.612	0					26	12	3	0	0	0	0.13267	1	14124	14124		71.877	4.3838	1	319280	+		23582	14481	15278	15338	23917	23917					0.05920438028169883
LDLPETAS	8	Unmodified	_LDLPETAS_					0	0	0			REV__DUSP4|p.P196Sfs*42|1|0.52|ENSG00000120875|chr8:29338496-29338497|-/C|frameshift_variant	REV__DUSP4|p.P196Sfs*42|1|0.52|ENSG00000120875|chr8:29338496-29338497|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.21624755859375	2	423.216183	844.417813	1.0538	0.00044599	-1.6084	-0.00068068	-0.55455	-0.00023469	423.21544577390154	31.563	0.36385	31.563	31.454	31.818	0					16	7	3	0	0	0	0.4723	1	11803	11803		62.978	0	1	653520	+		23583	12749	15279	15339	23918	23918					-0.010618895017614705
LDLPPATVPA	10	Unmodified	_LDLPPATVPA_					0	0	0		ENSG00000164050|ENST00000296440|PLXNB1;PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant	ENSG00000164050|ENST00000296440|PLXNB1	ENSG00000164050|ENST00000296440|PLXNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.28466796875	2	497.2844	992.554247	1.5174	0.00075456	-0.80658	-0.0004011	0.71079	0.00035346	497.2835960870056	39.696	0.098438	39.696	39.666	39.764	0					8	5	2	0	0	0	0.65213	1	12877	12877		27.882	0	1	42240			23584	5643	15280	15340	23919	23919					0.05767224728754172
LDLQVISPQP	10	Unmodified	_LDLQVISPQP_					0	0	0		IGSF11|p.S339Lfs*36|1|0.06|ENSG00000144847|chr3:118902801-118902802|-/AG|frameshift_variant;nc|ENSG00000144847|Q5DX21-2|IGSF11;ENSG00000144847|ENST00000393775|IGSF11	IGSF11|p.S339Lfs*36|1|0.06|ENSG00000144847|chr3:118902801-118902802|-/AG|frameshift_variant	IGSF11|p.S339Lfs*36|1|0.06|ENSG00000144847|chr3:118902801-118902802|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.3143310546875	2	555.313689	1108.61282	0.58727	0.00032612	0.0008976	4.9845E-07	0.58817	0.00032662	555.3135917126762	39.207	0.56374	39.207	38.941	39.504	0					46	20	3	0	0	0	0.56063	1	14854	14854		38.754	4.832	1	614880			23585	4646	15281	15341	23920	23920					0.062862813032325
LDLSSNDIS	9	Unmodified	_LDLSSNDIS_					0	0	0		LRTM1|p.N133D|1|0.36|ENSG00000144771|chr3:54924826-54924826|T/C|missense_variant	LRTM1|p.N133D|1|0.36|ENSG00000144771|chr3:54924826-54924826|T/C|missense_variant	LRTM1|p.N133D|1|0.36|ENSG00000144771|chr3:54924826-54924826|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2352294921875	2	482.235104	962.455655	-0.10839	-5.2271E-05	-1.4262	-0.00068775	-1.5346	-0.00074002	482.234923791625	38.82	0.30311	38.82	38.702	39.005	0					23	11	3	0	0	0	0.16806	1	14794	14794		65.465	10.689	1	146520			23586	11333	15282	15342	23921	23921					-0.027074233069583897
LDMLFIMKG	9	Unmodified	_LDMLFIMKG_					0	0	0			REV__ENSG00000186871|ENST00000334463|ERCC6L	REV__ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2871704101562	2	534.285031	1066.55551	1.1053	0.00059053	2.2147	0.0011833	3.32	0.0017738	534.2865514219106	28.992	0.14179	28.992	28.923	29.064	0					7	3	3	0	0	0	0.47473	1	9702	9702		35.618	8.571	1	52937	+		23587	17094	15283	15343	23922	23922					0.02489399501655498
LDMSEARS	8	Unmodified	_LDMSEARS_					0	0	0		ENSG00000005513|ENST00000293894|SOX8	ENSG00000005513|ENST00000293894|SOX8	ENSG00000005513|ENST00000293894|SOX8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.71044921875	2	454.710742	907.406931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.78	1	38.78	38.28	39.28	0								0	0	0	1.7419	1	14743	14743		55.504	9.5523	1				23588	962	15284	15344	23923	23923					-0.050476151476800624
LDNLQPET	8	Unmodified	_LDNLQPET_					0	0	0			REV__nc|ENSG00000204616|Q9BZY9-2|TRIM31	REV__nc|ENSG00000204616|Q9BZY9-2|TRIM31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2320861816406	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.713	1	47.713	47.213	48.213	0								0	0	0	1.7419	1	19023	19023		23.042	0	1		+		23589	17493	15285	15345	23924	23924					-0.016911020987663505
LDNVKMTKP	9	Unmodified	_LDNVKMTKP_					0	0	0			REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2877807617188	2	523.289159	1044.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.66	1	31.66	31.16	32.16	0								0	0	0	0.22284	1	10928	10928		47.657	5.2612	1		+		23590	12346	15286	15346	23925	23925					0.04326669742658851
LDNVQVVL	8	Unmodified	_LDNVQVVL_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2634582519531	2	450.263468	898.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.141	1	25.141	24.641	25.641	0								0	0	0	1.7419	1	8887	8887		44.117	3.3386	1				23591	4039	15287	15347	23926	23926					0.05906669040234647
LDPAKTLAE	9	Unmodified	_LDPAKTLAE_					0	0	0		ENST00000305368.8_1_5:111600591-111754802:-|nuORF;ENSG00000129595|ENST00000261486|EPB41L4A	ENST00000305368.8_1_5:111600591-111754802:-|nuORF	ENST00000305368.8_1_5:111600591-111754802:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2680969238281	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.773	1	25.773	25.273	26.273	0								0	0	0	0.29774	1	8244	8244		35.618	0	1				23592	3604	15288	15348	23927	23927					0.03786347832055981
LDPLYVVEVL	10	Unmodified	_LDPLYVVEVL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.3322143554688	2	580.33409	1158.65363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.374	1	37.374	36.874	37.874	0								0	0	0	0.38797	1	14164	14164		34.173	14.176	1				23593	1186	15289	15349	23928	23928					0.08064622622873685
LDPNRVLDVI	10	Unmodified	_LDPNRVLDVI_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.3328247070312	2	577.332413	1152.65027	1.5229	0.0008792	-0.66067	-0.00038143	0.8622	0.00049778	577.8334043768591	35.906	0.12398	35.906	35.829	35.953	0					6	3	2	0	0	0	0.45669	1	13515	13515		23.523	0	1	105120			23594	3426	15290	15350	23929	23929					0.08005372568845814
LDPRGRTPL	9	Unmodified	_LDPRGRTPL_					0	0	0		ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant;ENST00000487527.5_1_17:27916841-27940597:+|nuORF;ENSG00000198720|ENST00000394859|ANKRD13B	ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant	ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	342.2001647949219	3	342.201452	1023.58253	-0.73959	-0.00025309	-2.9937	-0.0010245	-3.7333	-0.0012775	342.2005664216197	27.422	0.11706	27.422	27.383	27.501	0					6	4	2	0	0	0	0.44593	1	8738	8738		37.812	2.6595	1	87073			23595	153	15291	15351	23930	23930					0.07167967428711108
LDPSNSHGEN	10	Unmodified	_LDPSNSHGEN_					0	0	0		UNC80|p.P551L|1|0.45|ENSG00000144406|chr2:209817911-209817911|C/T|missense_variant	UNC80|p.P551L|1|0.45|ENSG00000144406|chr2:209817911-209817911|C/T|missense_variant	UNC80|p.P551L|1|0.45|ENSG00000144406|chr2:209817911-209817911|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.23095703125	2	535.230884	1068.44722	0.58817	0.00031481	0.024125	1.2912E-05	0.61229	0.00032772	535.2309238476063	15.521	0.23079	15.521	15.435	15.666	0					15	9	3	0	0	0	0.6796	1	3381	3381		24.519	0.31644	1	195610			23596	23091	15292	15352	23931	23931					-0.08426977223552967
LDPSNSHGEN	10	Unmodified	_LDPSNSHGEN_					0	0	0		UNC80|p.P551L|1|0.45|ENSG00000144406|chr2:209817911-209817911|C/T|missense_variant	UNC80|p.P551L|1|0.45|ENSG00000144406|chr2:209817911-209817911|C/T|missense_variant	UNC80|p.P551L|1|0.45|ENSG00000144406|chr2:209817911-209817911|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2311401367188	2	535.230884	1068.44722	0.1763	9.4363E-05	0.62359	0.00033376	0.79989	0.00042813	535.2312256377	15.81	0.29487	15.81	15.726	16.021	0					26	7	5	0	0	0	0.2538	1	4152	4152		72.879	11.907	1	4086800			23597	23091	15292	15352	23932	23932					-0.08426977223552967
LDPTPSCH	8	Unmodified	_LDPTPSCH_					0	0	0			REV__ENST00000584531.1_1_18:14962171-14965804:+|nuORF	REV__ENST00000584531.1_1_18:14962171-14965804:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.19537353515625	2	435.194728	868.374903	-1.0173	-0.00044273	2.2246	0.00096815	1.2073	0.00052543	435.1959784704061	31.356	0.1891	31.356	31.264	31.454	0					9	7	2	0	0	0	0.68754	1	10392	10392		35.201	1.6851	1	63033	+		23598	20468	15293	15353	23933	23933					-0.06454982830825884
LDPTVKCPT	9	Unmodified	_LDPTVKCPT_					0	0	0		LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant;LRRK2|p.R1639Kfs*13|1|0.36|ENSG00000188906|chr12:40320067-40320068|-/A|frameshift_variant;LRRK2|p.R1639Gfs*15|1|0.59|ENSG00000188906|chr12:40320068-40320068|A/-|frameshift_variant;LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.25469970703125	2	487.254785	972.495018	0.71803	0.00034986	-0.5599	-0.00027281	0.15813	7.7051E-05	487.25437831388734	27.464	0.55138	27.464	27.293	27.845	0					21	13	2	0	0	0	0.41113	1	9591	9591		40.778	0	1	676060			23599	7284	15294	15354	23934	23934					0.007670054429127049
LDPYAAKIA	9	Unmodified	_LDPYAAKIA_					0	0	0			REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF	REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.2716369628906	2	481.271293	960.528032	0.039775	1.9142E-05	0.59792	0.00028776	0.6377	0.0003069	481.2715777831965	38.755	0.21374	38.755	38.632	38.846	0					21	12	2	0	0	0	0.50461	1	12605	12605		31.955	2.8053	1	91280	+		23600	14050	15295	15355	23935	23935					0.046189555572595964
LDQDLIFL	8	Unmodified	_LDQDLIFL_					0	0	0			REV__ENST00000374935.7_1_1:21299544-21306919:-|nuORF	REV__ENST00000374935.7_1_1:21299544-21306919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7601623535156	2	488.771126	975.527698	-0.51555	-0.00025198	-0.3255	-0.0001591	-0.84105	-0.00041108	488.77125243797286	38.602	0.11727	38.602	38.493	38.61	0					4	2	2	0	0	0	0.5676	1	15156	15156		42.474	0	1	41611	+		23601	18699	15296	15356	23936	23936					0.038955358374209936
LDQFQEKY	8	Unmodified	_LDQFQEKY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;ENST00000429659.7_1_4:68528855-68528909:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7664184570312	2	535.761289	1069.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.584	1	36.584	36.084	37.084	0								0	0	0	1.7419	1	14232	14232		56.721	3.3696	1				23602	1157	15297	15357	23937	23937					-0.023948401733150604
LDQGLRAAK	9	Unmodified	_LDQGLRAAK_					0	0	0			REV__ENST00000565382.1_1_16:84150699-84150948:+|nuORF	REV__ENST00000565382.1_1_16:84150699-84150948:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2850036621094	2	486.285266	970.555979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.801	1	16.801	16.301	17.301	0								0	0	0	0.23445	1	4096	4096		45.972	0	1		+		23603	20332	15298	15358	23938	23938					0.06952278537369239
LDQHSLIPA	9	Unmodified	_LDQHSLIPA_					0	0	0		nc|ENSG00000163738|Q9H903-3|MTHFD2L;nc|ENSG00000163738|Q9H903-1|MTHFD2L;nc|ENSG00000163738|Q9H903-5|MTHFD2L;ENSG00000163738|ENST00000325278|MTHFD2L	nc|ENSG00000163738|Q9H903-3|MTHFD2L	nc|ENSG00000163738|Q9H903-3|MTHFD2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2716064453125	2	497.271824	992.529095	0.99256	0.00049357	-1.2853	-0.00063917	-0.29279	-0.0001456	497.2712696653569	24.619	0.45843	24.619	24.312	24.771	0					17	9	2	0	0	0	0.13519	1	8527	8527		71.296	5.8303	1	658010			23604	5603	15299	15359	23939	23939					0.03253169926188093
LDQKPAADK	9	Unmodified	_LDQKPAADK_					0	0	0			REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2690734863281	2	493.269281	984.52401	0.86759	0.00042796	-0.63838	-0.0003149	0.2292	0.00011306	493.26884239287784	24.223	0.61751	24.223	23.763	24.38	0					27	12	3	0	0	0	0.04067	1	8314	8314		104.75	10.74	1	338820	+		23605	17080	15300	15360	23940	23940					0.03112866063565889
LDQMPPEE	8	Oxidation (M)	_LDQM(Oxidation (M))PPEE_		LDQM(1)PPEE		LDQM(61)PPEE	0	0	1		nc|ENSG00000114026|O15527-7|OGG1	nc|ENSG00000114026|O15527-7|OGG1	nc|ENSG00000114026|O15527-7|OGG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7110290527344	2	487.710408	973.406262	0.73553	0.00035873	-0.064442	-3.1429E-05	0.67109	0.0003273	487.7105420029038	20.297	0.87177	20.297	20.153	21.025	0					64	19	5	0	0	0	0.49216	1	6261	6261		60.972	7.6205	1	9526200			23606	11487	15301	15361	23941	23941		445			-0.08150454587394051
LDQMPPEE	8	Oxidation (M)	_LDQM(Oxidation (M))PPEE_		LDQM(1)PPEE		LDQM(57)PPEE	0	0	1		nc|ENSG00000114026|O15527-7|OGG1	nc|ENSG00000114026|O15527-7|OGG1	nc|ENSG00000114026|O15527-7|OGG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7108154296875	2	487.710408	973.406262	0.80317	0.00039171	-0.18025	-8.7911E-05	0.62291	0.0003038	487.7102957265413	20.184	0.71656	20.184	20.077	20.793	0					47	14	4	0	0	0	0.53424	2	6358	6358;6529		56.721	14.131	1	7384000			23607	11487	15301	15361	23942;23943	23942		445			-0.08150454587394051
LDQPIGANNI	10	Unmodified	_LDQPIGANNI_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7807006835938	2	527.780013	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.315	1	17.315	16.815	17.815	0								0	0	0	0.18965	1	4291	4291		65.465	12.529	1		+		23608	14470	15302	15362	23944	23944					0.02084251092287559
LDQVGVIR	8	Unmodified	_LDQVGVIR_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.26885986328125	2	450.269084	898.523616	-0.1986	-8.9421E-05	-1.1731	-0.0005282	-1.3717	-0.00061762	450.26865558838693	27.915	0.29965	27.915	27.743	28.043	0					10	7	2	0	0	0	0.69548	1	9207	9207		34.173	1.3601	1	40200	+		23609	13167	15303	15363	23945	23945					0.07029491134392174
LDRETEEL	8	Unmodified	_LDRETEEL_					0	0	0		ENSG00000107223|ENST00000224073|EDF1;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1	ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7482604980469	2	502.748379	1003.4822	0.98652	0.00049597	-1.0964	-0.00055123	-0.10992	-5.5263E-05	502.74779527597053	27.317	0.26933	27.317	27.152	27.422	0					9	5	2	0	0	0	0.25143	1	9892	9892		98.629	0	1	896420			23610	2474	15304	15364	23946	23946					-0.019397344156004692
LDRFQRRR	8	Unmodified	_LDRFQRRR_					0	0	0			REV__nc|ENSG00000085644|O14771-2|ZNF213	REV__nc|ENSG00000085644|O14771-2|ZNF213	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.8924255371094	3	382.891612	1145.65301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.99	1	17.99	17.49	18.49	0								0	0	0	1.7419	1	5442	5442		21.96	1.1227	1		+		23611	13359	15305	15365	23947	23947					0.08600685537044228
LDRLFAGVDV	10	Unmodified	_LDRLFAGVDV_					0	0	0			REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8737487792969	3	368.873113	1103.59751	1.0699	0.00039467	-2.1169	-0.00078087	-1.047	-0.00038619	368.8725536606135	28.766	0.26436	28.766	28.565	28.829	0					8	5	2	0	0	0	0.35046	1	10594	10594		61.691	1.573	1	938220	+		23612	13654	15306	15366	23948	23948					0.04985414506040797
LDRLTFDY	8	Unmodified	_LDRLTFDY_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000338427.10_1_7:44425612-44442312:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.762451171875	2	521.763832	1041.51311	0.36794	0.00019198	0.80826	0.00042172	1.1762	0.0006137	521.7641500718412	26.015	0.52539	26.015	25.76	26.286	0					29	13	3	0	0	0	0.6088	1	8118	8118		47.657	0	1	167020			23613	1083	15307	15367	23949	23949					-0.00598536310712916
LDRNPGGLG	9	Unmodified	_LDRNPGGLG_					0	0	0			REV__ENSG00000188493|ENST00000378313|ACTMAP	REV__ENSG00000188493|ENST00000378313|ACTMAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.7406311035156	2	449.740691	897.466829	-0.39849	-0.00017922	-1.0355	-0.00046569	-1.434	-0.00064491	449.740574750554	28.566	0.16396	28.566	28.46	28.624	0					5	3	2	0	0	0	0.37197	1	10378	10378		44.117	3.5442	1	124240	+		23614	17172	15308	15368	23950	23950					0.013994435778613479
LDSAFSQLQS	10	Unmodified	_LDSAFSQLQS_					0	0	0		CHST3|p.G178Afs*38|1|0.33|ENSG00000122863|chr10:72007559-72007559|G/-|frameshift_variant;ENSG00000122863|ENST00000373115|CHST3	CHST3|p.G178Afs*38|1|0.33|ENSG00000122863|chr10:72007559-72007559|G/-|frameshift_variant	CHST3|p.G178Afs*38|1|0.33|ENSG00000122863|chr10:72007559-72007559|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7720336914062	2	548.269478	1094.5244	0.48805	0.00026759	-0.27565	-0.00015113	0.21241	0.00011646	548.2694223113698	39.492	0.82472	39.492	39.333	40.158	0					94	31	6	0	0	0	0.44601	1	15004	15004		51.193	5.2204	1	8281300			23615	540	15309	15369	23951	23951					-0.019077590072356543
LDSDIRKPS	9	Unmodified	_LDSDIRKPS_					0	0	0		ENST00000494739.1_1_3:166579734-166579821:+|nuORF	ENST00000494739.1_1_3:166579734-166579821:+|nuORF	ENST00000494739.1_1_3:166579734-166579821:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7798461914062	2	515.780013	1029.54547	3.2633	0.0016832	-3.2361	-0.0016691	0.027202	1.403E-05	515.7787237975563	32.395	0.47196	32.395	32.034	32.506	0					17	9	4	0	0	0	0.22837	1	12224	12224		58.23	3.4536	1	780490			23616	10102	15310	15370	23952	23952					0.03188251092274186
LDSDLVLNY	9	Unmodified	_LDSDLVLNY_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2693481445312	2	526.268947	1050.52334	0.60935	0.00032068	0.12791	6.7314E-05	0.73726	0.000388	526.2689487700942	38.275	0.33986	38.275	38.17	38.51	0					15	7	3	0	0	0	0.25109	1	15024	15024		55.504	0.72789	1	602330	+		23617	16786	15311	15371	23953	23953					0.00010026623840531101
LDSIFGPVL	9	Unmodified	_LDSIFGPVL_					0	0	0		SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant;SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1	SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant	SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.77191162109375	2	480.773668	959.532783	0.42763	0.00020559	-4.3218	-0.0020778	-3.8942	-0.0018722	480.7720699113931	33.726	0.16283	33.726	33.67	33.833	0					6	4	2	0	0	0	0.30268	1	12503	12503		50.025	2.1089	1	49884			23618	3075	15312	15372	23954	23954					0.05139839700041193
LDSKEVRK	8	Unmodified	_LDSKEVRK_					0	0	0			REV__nc|ENSG00000164088|Q96MI6-4|PPM1M	REV__nc|ENSG00000164088|Q96MI6-4|PPM1M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.52581787109375	3	325.525825	973.555644	0.53233	0.00017329	-0.62479	-0.00020338	-0.092457	-3.0097E-05	325.525607500089	15.894	0.13522	15.894	15.802	15.937	0					8	3	3	0	0	0	0.77246	1	4205	4205		19.997	1.7347	1	620900	+		23619	15961	15313	15373	23955	23955					0.06780858817523949
LDSLIQNV	8	Unmodified	_LDSLIQNV_					0	0	0		N4BP2|p.A149V|1|0.35|ENSG00000078177|chr4:40102291-40102291|C/T|missense_variant	N4BP2|p.A149V|1|0.35|ENSG00000078177|chr4:40102291-40102291|C/T|missense_variant	N4BP2|p.A149V|1|0.35|ENSG00000078177|chr4:40102291-40102291|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.750732421875	2	451.2531	900.491647	0.65755	0.00029672	-3.6403	-0.0016427	-2.9827	-0.001346	451.25281152005215	26.73	1.1378	26.73	26.042	27.18	0					69	27	4	0	0	0	0.6088	1	9201	9201		47.657	1.6851	1	2042500			23620	11401	15314	15374	23956	23956					0.03742078660570769
LDSPVPFDQ	9	Unmodified	_LDSPVPFDQ_					0	0	0			REV__SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant	REV__SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7492370605469	2	509.248015	1016.48148	0.99016	0.00050424	-0.86432	-0.00044015	0.12584	6.4083E-05	509.24743448690083	27.686	0.62811	27.686	27.468	28.096	0					39	21	3	0	0	0	0.17854	1	8657	8657		64.207	5.9773	1	161390	+		23621	21525	15315	15375	23957	23957					-0.0261052906465693
LDSQASDEIS	10	Unmodified	_LDSQASDEIS_					0	0	0			REV__nc|ENSG00000163565|Q16666-8|IFI16	REV__nc|ENSG00000163565|Q16666-8|IFI16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7413940429688	2	532.740751	1063.46695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.748	1	32.748	32.248	33.248	0								0	0	0	0.30854	1	10946	10946		49.536	7.1399	1		+		23622	15896	15316	15376	23958	23958					-0.0622464600346575
LDSSGQIVY	9	Unmodified	_LDSSGQIVY_					0	0	0			REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.24749755859375	2	491.248015	980.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.392	1	35.392	34.892	35.892	0								0	0	0	0.063485	1	13659	13659		82.305	0	1		+		23623	16023	15317	15377	23959	23959					-0.009545290646656213
LDSTGVNIL	9	Unmodified	_LDSTGVNIL_					0	0	0		nc|ENSG00000188610|Q86X60-2|FAM72B;ENST00000471903.2_1:120837853-120854583:+|nuORF;ENSG00000188610|ENST00000369390|FAM72B	nc|ENSG00000188610|Q86X60-2|FAM72B	nc|ENSG00000188610|Q86X60-2|FAM72B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2583312988281	2	466.258382	930.502212	-0.49926	-0.00023278	0.16819	7.8418E-05	-0.33107	-0.00015436	466.2586899520254	26.911	0.26517	26.911	26.805	27.07	0					11	5	3	0	0	0	0.055856	1	9582	9582		93.195	2.5946	1	295510			23624	7259	15318	15378	23960	23960					0.03418061315016985
LDSTMFSKG	9	Unmodified	_LDSTMFSKG_					0	0	0		nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.23846435546875	2	493.236593	984.458632	0.50037	0.0002468	3.1351	0.0015463	3.6355	0.0017931	493.23837072943263	22.315	0.15012	22.315	22.221	22.371	0					5	3	2	0	0	0	0.41113	1	7240	7240		40.778	17.255	1	84112			23625	3992	15319	15379	23961	23961					-0.03421871453770109
LDSVKFPVG	9	Unmodified	_LDSVKFPVG_					0	0	0			REV__nc|ENSG00000158062|Q5T124-3|UBXN11	REV__nc|ENSG00000158062|Q5T124-3|UBXN11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.27142333984375	2	481.271293	960.528032	0.53574	0.00025784	-0.25379	-0.00012214	0.28195	0.0001357	481.27086036020427	39.03	0.42383	39.03	38.897	39.321	0					40	15	4	0	0	0	0.35021	1	14820	14820		45.972	6.7194	1	506400	+		23626	15675	15320	15380	23962	23962					0.046189555572937024
LDSVKFPVG	9	Unmodified	_LDSVKFPVG_					0	0	0			REV__nc|ENSG00000158062|Q5T124-3|UBXN11	REV__nc|ENSG00000158062|Q5T124-3|UBXN11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2709045410156	2	481.271293	960.528032	-0.13801	-6.6422E-05	-0.60906	-0.00029312	-0.74707	-0.00035954	481.27091440692027	39.042	0.24817	39.042	38.941	39.189	0					17	9	2	0	0	0	0.5741	1	14841	14841		24.519	0.31644	1	122040	+		23627	15675	15320	15380	23963	23963					0.046189555572937024
LDTENMISGD	10	Oxidation (M)	_LDTENM(Oxidation (M))ISGD_		LDTENM(1)ISGD		LDTENM(60)ISGD	0	0	1			REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7352294921875	2	555.734611	1109.45467	-0.091947	-5.1098E-05	1.9389	0.0010775	1.8469	0.0010264	555.7357552688384	36.239	0.21913	36.239	36.13	36.35	0					10	6	2	0	0	0	0.36476	1	14089	14089		60.118	13.661	1	371950	+		23628	15288	15321	15381	23964	23964		588			-0.09568005738151442
LDTFLDRC	8	Unmodified	_LDTFLDRC_					0	0	0		ENST00000240055.7_1_12:104529243-104532019:-|nuORF	ENST00000240055.7_1_12:104529243-104532019:-|nuORF	ENST00000240055.7_1_12:104529243-104532019:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7357482910156	2	491.73676	981.458967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.434	1	30.434	29.934	30.934	0								0	0	0	1.7419	1	9699	9699		45.952	6.6991	1				23629	8215	15322	15382	23965	23965					-0.03250451733936188
LDTGKKLSDD	10	Unmodified	_LDTGKKLSDD_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2817993164062	2	546.282586	1090.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.586	1	40.586	40.086	41.086	0								0	0	0	0.4044	1	14409	14409		29.17	3.596	1				23630	7486	15323	15383	23966	23966					0.008965101642388618
LDTLKTQL	8	Unmodified	_LDTLKTQL_					0	0	0		nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;OFD1|p.I117Sfs*28|1|0.59|ENSG00000046651|chrX:13738879-13738879|A/-|frameshift_variant;ENST00000380567.5_2_X:13753187-13758224:+|nuORF;nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF	nc|ENSG00000046651|O75665-3|OFD1	nc|ENSG00000046651|O75665-3|OFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2763366699219	2	466.276575	930.538597	0.061123	2.85E-05	-0.57407	-0.00026768	-0.51295	-0.00023918	466.27638142869057	28.792	0.18285	28.792	28.708	28.891	0					13	6	3	0	0	0	0.48092	1	9016	9016		62.107	0	1	185390			23631	1213	15324	15384	23967	23967					0.07054938211717854
LDTMSNLQ	8	Oxidation (M)	_LDTM(Oxidation (M))SNLQ_		LDTM(1)SNLQ		LDTM(91)SNLQ	0	0	1			REV__ENST00000428930.1_1:143231394-143232089:+|nuORF	REV__ENST00000428930.1_1:143231394-143232089:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2167053222656	2	469.2184	936.422247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.669	1	32.669	32.169	33.169	0								0	0	0	1.7419	1	12016	12016		90.777	11.326	1		+		23632	19098	15325	15385	23968	23968		700			-0.048507483504977245
LDTPRQAA	8	Unmodified	_LDTPRQAA_					0	0	0		nc|ENSG00000101624|Q8TAP6-3|CEP76;nc|ENSG00000101624|Q8TAP6-2|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF;ENSG00000101624|ENST00000262127|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.2352294921875	2	436.235242	870.45593	0.78023	0.00034036	-0.95481	-0.00041652	-0.17458	-7.6158E-05	436.234928721985	34.053	0.2351	34.053	33.95	34.185	0					12	5	3	0	0	0	0.49887	1	13100	13100		60.294	1.512	1	979290			23633	2132	15326	15386	23969	23969					0.01552041203558474
LDTQTSQVL	9	Unmodified	_LDTQTSQVL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7670593261719	2	502.766571	1003.51859	-0.90314	-0.00045407	1.1662	0.00058635	0.2631	0.00013228	502.7671580055649	36.813	0.16468	36.813	36.764	36.928	0					16	9	2	0	0	0	0.1424	1	12462	12462		69.628	7.5202	1	68033			23634	8044	15327	15387	23970	23970					0.016971424811004
LDTVVVDAR	9	Unmodified	_LDTVVVDAR_					0	0	0			REV__ENST00000484763.1_1_14:50582563-50582965:-|nuORF	REV__ENST00000484763.1_1_14:50582563-50582965:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2795104980469	2	494.277106	986.53966	0.67856	0.00033539	-0.09509	-4.7001E-05	0.58347	0.00028839	494.27736951850034	31.554	0.38271	31.554	31.381	31.764	0					32	8	5	0	0	0	0.42902	1	11949	11949		39.253	10.103	1	1016400	+		23635	19642	15328	15388	23971	23971					0.04585152580614249
LDVDHTAI	8	Unmodified	_LDVDHTAI_					0	0	0			REV__B4GALT7|p.M161T|1|0.14|ENSG00000027847|chr5:177607370-177607370|T/C|missense_variant	REV__B4GALT7|p.M161T|1|0.14|ENSG00000027847|chr5:177607370-177607370|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2298278808594	2	442.229625	882.444697	-1.1158	-0.00049344	1.8442	0.00081555	0.72838	0.00032211	442.23037622766543	31.161	0.14261	31.161	31.089	31.231	0					8	5	2	0	0	0	0.49887	1	10298	10298		60.294	10.269	1	114600	+		23636	12270	15329	15389	23972	23972					-0.0012278089058099795
LDVENLMVI	9	Unmodified	_LDVENLMVI_					0	0	0			REV__nc|ENSG00000152894|Q15262|PTPRK	REV__nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2846069335938	2	523.283543	1044.55253	1.7927	0.0009381	-0.96996	-0.00050756	0.82275	0.00043053	523.282903527406	38.053	0.35147	38.053	37.931	38.282	0					25	12	3	0	0	0	0.33044	1	14889	14889		47.657	3.5405	1	511080	+		23637	15522	15330	15390	23973	23973					0.032038476485013234
LDVGQKKL	8	Unmodified	_LDVGQKKL_					0	0	0			REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7784729003906	2	450.779285	899.544017	0.87599	0.00039488	-1.3791	-0.00062169	-0.50315	-0.00022681	450.7784012444125	43.702	0.15131	43.702	43.625	43.776	0					7	4	2	0	0	0	0.49216	1	17494	17494		60.972	2.19	1	112360	+		23638	21979	15331	15391	23974	23974					0.09022661794188025
LDVIKILSPHM	11	Unmodified	_LDVIKILSPHM_					0	0	0		ENST00000528638.1_1_11:77320422-77320536:+|nuORF	ENST00000528638.1_1_11:77320422-77320536:+|nuORF	ENST00000528638.1_1_11:77320422-77320536:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	633.3685302734375	2	633.367941	1264.72133	1.0105	0.00064005	1.1779	0.00074605	2.1885	0.0013861	633.3684726495727	54.289	0.53279	54.289	53.984	54.517	0					57	32	2	0	0	0	0.78104	1	15961	15961		19.104	0.84144	1	126570			23639	10402	15332	15392	23975	23975					0.09955749282016768
LDVKKTQFL	9	Unmodified	_LDVKKTQFL_					0	0	0			REV__ENSG00000128311|ENST00000249042|TST	REV__ENSG00000128311|ENST00000249042|TST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.5533142089844	3	364.553492	1090.63865	0.47625	0.00017362	-0.68674	-0.00025035	-0.21049	-7.6736E-05	364.55324243887327	28.523	0.37185	28.523	28.435	28.807	0					13	9	2	0	0	0	0.46194	1	10098	10098		36.447	0	1	399370	+		23640	14511	15333	15393	23976	23976					0.09695175545516577
LDVLFNVAGF	10	Unmodified	_LDVLFNVAGF_					0	0	0		nc|ENSG00000164039|Q9BUT1-2|BDH2;ENST00000492366.5_1_4:104007535-104017411:-|nuORF;ENSG00000164039|ENST00000296424|BDH2	nc|ENSG00000164039|Q9BUT1-2|BDH2	nc|ENSG00000164039|Q9BUT1-2|BDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8006591796875	2	547.797675	1093.5808	1.8041	0.00098826	0.89423	0.00048986	2.6983	0.0014781	547.7982558058762	43.635	0.57218	43.635	43.514	44.086	0					94	29	5	0	0	0	0.33577	1	17027	17027		63.306	1.1989	1	12465000			23641	5642	15334	15394	23977	23977					0.03774913620077314
LDVLIVNGI	9	Unmodified	_LDVLIVNGI_					0	0	0		tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.29571533203125	2	478.294768	954.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.601	1	39.601	39.101	40.101	0								0	0	0	0.3304	1	12849	12849		29.15	2.4566	1				23642	23024	15335	15395	23978	23978					0.09587815108432096
LDVMAEMQ	8	Unmodified	_LDVMAEMQ_					0	0	0		ENST00000368654.7_1_10:129914037-129921160:-|nuORF;ENST00000478293.1_1_10:129914037-129924496:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7142028808594	2	468.711896	935.409239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.414	1	42.414	41.914	42.914	0								0	0	0	1.7419	1	16646	16646		55.504	14.726	1				23643	8930	15336	15396	23979	23979					-0.06104902734239204
LDVMDRGLI	9	Oxidation (M)	_LDVM(Oxidation (M))DRGLI_		LDVM(1)DRGLI		LDVM(82)DRGLI	0	0	1		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2796630859375	2	524.278792	1046.54303	1.1334	0.00059422	-0.9279	-0.00048648	0.20551	0.00010775	524.278539095947	29.261	0.18044	29.261	29.209	29.39	0					6	4	2	0	0	0	0.087861	1	9832	9832		82.241	21.269	1	67638			23644	3046	15337	15397	23980	23980		134			0.021620793629836044
LDVNKIFY	8	Unmodified	_LDVNKIFY_					0	0	0		ENSG00000145864|ENST00000393959|GABRB2	ENSG00000145864|ENST00000393959|GABRB2	ENSG00000145864|ENST00000393959|GABRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2801513671875	2	506.279118	1010.54368	1.2584	0.00063708	-1.3416	-0.0006792	-0.083202	-4.2124E-05	506.27865765527713	38.843	0.44385	38.843	38.729	39.173	0					21	9	3	0	0	0	0.43813	1	15290	15290		66.429	3.123	1	446650			23645	4698	15338	15398	23981	23981					0.03883242074334703
LDVRITAL	8	Unmodified	_LDVRITAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.779296875	2	450.779285	899.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.708	1	43.708	43.208	44.208	0								0	0	0	1.7419	1	17499	17499		62.107	3.3255	1				23646	1219	15339	15399	23982	23982					0.09022661794165288
LDVSGPKV	8	Unmodified	_LDVSGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.I4226V|1|0.1|ENSG00000124942|chr11:62521741-62521741|T/C|missense_variant;AHNAK|p.A4215V|1|0.31|ENSG00000124942|chr11:62521773-62521773|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.7369079589844	2	407.737086	813.459619	-0.12881	-5.252E-05	-0.23614	-9.6284E-05	-0.36495	-0.0001488	407.7368434424685	29.065	0.25193	29.065	28.874	29.125	0					14	9	2	0	0	0	0.43813	1	9105	9105		66.429	0	1	87106			23647	3401	15340	15400	23983	23983					0.04542710977432307
LDVSGPKV	8	Unmodified	_LDVSGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.I4226V|1|0.1|ENSG00000124942|chr11:62521741-62521741|T/C|missense_variant;AHNAK|p.A4215V|1|0.31|ENSG00000124942|chr11:62521773-62521773|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7369384765625	2	407.737086	813.459619	0.98582	0.00040196	0.46694	0.00019039	1.4528	0.00059235	407.73655792295756	29.303	0.48856	29.303	28.968	29.456	0					32	12	4	0	0	0	0.2498	1	10433	10433		101.6	0	1	854780			23648	3401	15340	15400	23984	23984					0.04542710977432307
LDVSGPKV	8	Unmodified	_LDVSGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.I4226V|1|0.1|ENSG00000124942|chr11:62521741-62521741|T/C|missense_variant;AHNAK|p.A4215V|1|0.31|ENSG00000124942|chr11:62521773-62521773|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.7369384765625	2	407.737086	813.459619	1.1823	0.00048205	-0.93971	-0.00038315	0.24255	9.8898E-05	407.7364624940201	29.288	0.51354	29.288	28.96	29.473	0					31	11	4	0	0	0	0.2451	1	10799	10799		110.12	0	1	1943300			23649	3401	15340	15400	23985	23985					0.04542710977432307
LDVSGPKV	8	Unmodified	_LDVSGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.I4226V|1|0.1|ENSG00000124942|chr11:62521741-62521741|T/C|missense_variant;AHNAK|p.A4215V|1|0.31|ENSG00000124942|chr11:62521773-62521773|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.7369689941406	2	407.737086	813.459619	-0.098106	-4.0002E-05	-0.018591	-7.5801E-06	-0.1167	-4.7582E-05	407.7369735173586	29.073	0.34369	29.073	28.88	29.223	0					21	9	3	0	0	0	0.5535	1	9720	9720		54.776	0	1	219840			23650	3401	15340	15400	23986	23986					0.04542710977432307
LDVSGPKV	8	Unmodified	_LDVSGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.I4226V|1|0.1|ENSG00000124942|chr11:62521741-62521741|T/C|missense_variant;AHNAK|p.A4215V|1|0.31|ENSG00000124942|chr11:62521773-62521773|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.7369079589844	2	407.737086	813.459619	0.74226	0.00030264	0.053135	2.1665E-05	0.79539	0.00032431	407.7366076178568	29.223	0.51491	29.223	28.893	29.408	0					28	10	4	0	0	0	0.2678	1	10658	10658		93.195	0	1	1273500			23651	3401	15340	15400	23987	23987					0.04542710977432307
LDWSAGPK	8	Unmodified	_LDWSAGPK_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.22686767578125	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.286	1	38.286	37.786	38.786	0								0	0	0	1.7419	1	13695	13695		55.504	3.205	1		+		23652	16500	15341	15401	23988	23988					-0.0021045968237558554
LDYLRISKI	9	Unmodified	_LDYLRISKI_					0	0	0		chr19:41727352-41769320|187|11.17|0.17|6.01|+|0|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|2	chr19:41727352-41769320|187|11.17|0.17|6.01|+|0|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|2	chr19:41727352-41769320|187|11.17|0.17|6.01|+|0|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.8400268554688	2	560.839874	1119.66519	1.7924	0.0010053	-0.55774	-0.0003128	1.2347	0.00069247	560.8400196470685	35.231	0.16412	35.231	35.153	35.317	0					7	4	2	0	0	0	0.53064	1	13191	13191		15.642	0	1	84791			23653	526	15342	15402	23989	23989					0.11014864436833705
LEAAGIGKL	9	Unmodified	_LEAAGIGKL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000132466|O75179-5|ANKRD17;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2659912109375	2	436.26601	870.517468	-0.41255	-0.00017998	0.48528	0.00021171	0.072727	3.1728E-05	436.26617191401783	34.645	0.327	34.645	34.521	34.848	0					15	8	3	0	0	0	0.032052	1	12912	12912		107.01	16.638	1	281900			23654	3724;154	15343	15403	23990	23990					0.07702972902859528
LEAAGIGKL	9	Unmodified	_LEAAGIGKL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000132466|O75179-5|ANKRD17;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.2659606933594	2	436.26601	870.517468	-0.88477	-0.000386	0.98245	0.00042861	0.097679	4.2614E-05	436.2663994785866	34.423	0.14047	34.423	34.359	34.499	0					9	6	2	0	0	0	0.078509	1	11603	11603		85.161	8.3867	1	141560			23655	3724;154	15343	15403	23991	23991					0.07702972902859528
LEAAGIGKL	9	Unmodified	_LEAAGIGKL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000132466|O75179-5|ANKRD17;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.26605224609375	2	436.26601	870.517468	-0.65412	-0.00028537	0.51937	0.00022658	-0.13475	-5.8788E-05	436.26628435369037	34.379	0.22157	34.379	34.281	34.503	0					10	7	2	0	0	0	0.098791	1	12173	12173		79.713	2.9384	1	62507			23656	3724;154	15343	15403	23992	23992					0.07702972902859528
LEAAKALVL	9	Unmodified	_LEAAKALVL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2969055175781	2	464.29731	926.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.504	1	39.504	39.004	40.004	0								0	0	0	0.00097936	1	15044	15044		127.46	25.861	1				23657	5941	15344	15404	23993	23993					0.1138411897103424
LEAAKALVL	9	Unmodified	_LEAAKALVL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2972412109375	2	464.29731	926.580068	-0.14116	-6.554E-05	-0.13603	-6.316E-05	-0.27719	-0.0001287	464.29722887861266	39.512	0.18938	39.512	39.37	39.56	0					12	6	2	0	0	0	0.012915	1	15521	15521		134.81	58.037	1	158240			23658	5941	15344	15404	23994	23994					0.1138411897103424
LEADRMAAL	9	Unmodified	_LEADRMAAL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.25750732421875	2	495.257859	988.501166	-0.40442	-0.00020029	-0.04773	-2.3639E-05	-0.45214	-0.00022393	495.2578340505717	34.951	0.51184	34.951	34.871	35.383	0					24	13	3	0	0	0	0.037924	1	13070	13070		101.25	26.998	1	862810			23659	1878	15345	15405	23995	23995					0.006455236744386639
LEAEEDNDTE	10	Unmodified	_LEAEEDNDTE_					0	0	0		ENSG00000152270|ENST00000282096|PDE3B;nc|ENSG00000152270|Q13370-2|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.7283935546875	2	582.73058	1163.44661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.005	1	32.005	31.505	32.505	0								0	0	0	0.4162	1	12124	12124		25.574	4.6271	1				23660	5007	15346	15406	23996	23996					-0.12857861453949226
LEAGALDVLV	10	Unmodified	_LEAGALDVLV_					0	0	0		tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1	tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1	tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.289794921875	2	500.289682	998.564812	-2.1399	-0.0010706	1.5414	0.00077117	-0.59845	-0.0002994	500.29066490899237	35.078	0.21189	35.078	34.942	35.153	0					11	6	2	0	0	0	0.24256	1	12472	12472		74.255	9.0978	1	135320			23661	23012	15347	15407	23997	23997					0.06547207383175646
LEAGLLGLS	9	Unmodified	_LEAGLLGLS_					0	0	0		ENST00000497882.5_1_2:220079653-220079878:-|nuORF	ENST00000497882.5_1_2:220079653-220079878:-|nuORF	ENST00000497882.5_1_2:220079653-220079878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.75836181640625	2	436.758018	871.501483	0.23741	0.00010369	0.48474	0.00021171	0.72215	0.0003154	436.7583259713457	29.271	0.10504	29.271	29.218	29.323	0					7	4	2	0	0	0	0.047412	1	9229	9229		96.19	13.44	1	43377			23662	10132	15348	15408	23998	23998					0.060592666659431416
LEANLGVDN	9	Unmodified	_LEANLGVDN_					0	0	0			REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7373962402344	2	472.737814	943.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.448	1	23.448	22.948	23.948	0								0	0	0	0.17415	1	7158	7158		54.722	3.3869	1		+		23663	12399	15349	15409	23999	23999					-0.012916997244701633
LEAQRLIA	8	Unmodified	_LEAQRLIA_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.27667236328125	2	457.276909	912.539266	-1.0323	-0.00047205	0.1473	6.7355E-05	-0.88502	-0.0004047	457.2771000136714	34.825	0.13428	34.825	34.743	34.878	0					11	6	2	0	0	0	0.44433	1	11758	11758		65.803	4.8312	1	56775	+		23664	14297	15350	15410	24000	24000					0.07949777651435852
LEAQSKEL	8	Unmodified	_LEAQSKEL_					0	0	0			REV__BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant	REV__BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2500915527344	2	459.250557	916.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.699	1	24.699	24.199	25.199	0								0	0	0	1.7419	1	8676	8676		35.618	0	1		+		23665	12274	15351	15411	24001	24001					0.024977747979505693
LEASQEFVLN	10	Unmodified	_LEASQEFVLN_					0	0	0		ENST00000565559.5_2_15:42697105-42701567:+|nuORF	ENST00000565559.5_2_15:42697105-42701567:+|nuORF	ENST00000565559.5_2_15:42697105-42701567:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.7960815429688	2	575.292953	1148.57135	0.99613	0.00057307	-0.27277	-0.00015692	0.72336	0.00041614	575.2927462113416	32.96	0.19346	32.96	32.855	33.048	0					16	8	3	0	0	0	0.56931	1	10668	10668		37.812	0.30334	1	194870			23666	10752	15352	15412	24002	24002					0.003011005439248038
LEATARSLE	9	Unmodified	_LEATARSLE_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2664794921875	2	495.266739	988.518924	-0.65846	-0.00032611	0.48758	0.00024148	-0.17088	-8.4632E-05	495.2668661457571	20.802	0.1674	20.802	20.692	20.86	0					7	3	3	0	0	0	0.1115	1	6678	6678		76.774	10.345	1	683350	+		23667	13037	15353	15413	24003	24003					0.0242056220096174
LEAVKLKLA	9	Unmodified	_LEAVKLKLA_					0	0	0			REV__ENSG00000267978|ENST00000595065|MAGEA9B	REV__ENSG00000267978|ENST00000595065|MAGEA9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.88641357421875	3	328.886582	983.637917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.382	1	34.382	33.882	34.882	0								0	0	0	0.13522	1	12802	12802		69.628	2.134	1		+		23668	14365	15354	15414	24004	24004					0.14544380896450093
LECGTKPQV	9	Unmodified	_LECGTKPQV_					0	0	0			REV__ENSG00000068985|ENST00000376150|PAGE1	REV__ENSG00000068985|ENST00000376150|PAGE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.75579833984375	2	487.75241	973.490267	-0.70412	-0.00034344	0.8349	0.00040722	0.13078	6.3788E-05	487.75470801412854	30.075	0.15749	30.075	29.978	30.136	0					4	3	2	0	0	0	0.2873	1	11199	11199		51.335	0	1	29061	+		23669	13157	15355	15415	24005	24005					0.0024612130016521405
LECSETSKL	9	Unmodified	_LECSETSKL_					0	0	0		ENST00000475700.1_1_1:112309433-112309511:+|nuORF	ENST00000475700.1_1_1:112309433-112309511:+|nuORF	ENST00000475700.1_1_1:112309433-112309511:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2513427734375	2	505.247157	1008.47976	2.9333	0.0014821	4.372	0.002209	7.3054	0.003691	505.2499871608222	29.921	0.21731	29.921	29.813	30.031	0					7	4	2	0	0	0	0.30841	1	11033	11033		49.536	1.8787	1	656160			23670	9900	15356	15416	24006	24006					-0.024139061449318433
LEDAGVREL	9	Unmodified	_LEDAGVREL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.26678466796875	2	501.266739	1000.51892	-2.1086	-0.001057	1.2322	0.00061764	-0.87644	-0.00043933	501.2676111697685	31.471	0.14267	31.471	31.373	31.516	0					6	3	2	0	0	0	0.22823	2	10848	10831;10848		58.246	8.7102	1	105140			23671	1117	15357	15417	24007;24008	24008					0.01868562200957058
LEDIQSFTL	9	Unmodified	_LEDIQSFTL_					0	0	0			REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2765502929688	2	533.276772	1064.53899	-0.40636	-0.0002167	0.21824	0.00011638	-0.18811	-0.00010032	533.2766567486364	37.45	0.22421	37.45	37.375	37.6	0					19	12	2	0	0	0	0.12834	1	12667	12667		72.879	3.2516	1	104160	+		23672	21951	15358	15418	24009	24009					0.009303131409069465
LEDIRLKP	8	Unmodified	_LEDIRLKP_					0	0	0			REV__tr|U7SQ46|U7SQ46_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01689PE=4SV=1	REV__tr|U7SQ46|U7SQ46_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01689PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2973937988281	2	492.297842	982.581131	0.58825	0.00028959	-1.6167	-0.00079591	-1.0285	-0.00050632	492.29733793756236	37.79	0.62557	37.79	37.455	38.081	0					60	20	4	0	0	0	0.46905	1	14722	14722		63.306	2.3343	1	1002700	+		23673	21835	15359	15419	24010	24010					0.08914333339942004
LEDKRFGII	9	Unmodified	_LEDKRFGII_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.2132568359375	3	364.213358	1089.61824	0.47673	0.00017363	-0.79246	-0.00028862	-0.31573	-0.00011499	364.2130847819045	26.161	0.33702	26.161	26.031	26.368	0					20	8	4	0	0	0	0.44593	1	8994	8994		37.812	3.8899	1	1364300			23674	1295	15360	15420	24011	24011					0.07702004885732094
LEDLKVDK	8	Unmodified	_LEDLKVDK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000522843.5_1_8:59477592-59488665:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2735900878906	2	480.274032	958.533512	-0.30293	-0.00014549	-0.26857	-0.00012899	-0.5715	-0.00027448	480.27382707031455	28.526	0.24731	28.526	28.403	28.651	0					12	6	3	0	0	0	0.35045	1	9470	9470		76.774	2.5191	1	249360			23675	4177	15361	15421	24012	24012					0.05258634349092972
LEDLQQKQ	8	Unmodified	_LEDLQQKQ_					0	0	0			REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2666931152344	2	501.266739	1000.51892	1.117	0.00055992	-0.83673	-0.00041943	0.28028	0.0001405	501.26636950990314	31.658	0.36385	31.658	31.454	31.818	0					10	7	2	0	0	0	0.59773	1	11873	11873		49.442	0.84	1	464810	+		23676	13684	15362	15422	24013	24013					0.01868562200957058
LEDNEKEKL	9	Unmodified	_LEDNEKEKL_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.2918090820312	2	559.290411	1116.56627	0.12276	6.8656E-05	0.61844	0.00034589	0.7412	0.00041454	559.2905518390249	30.661	0.19406	30.661	30.588	30.782	0					15	7	3	0	0	0	0.25716	1	10101	10101		54.776	0	1	116660	+		23677	15336	15363	15423	24014	24014					0.012647966812892264
LEDTNQLQL	9	Unmodified	_LEDTNQLQL_					0	0	0			REV__ENST00000538997.1_1_12:10460676-10464247:+|nuORF	REV__ENST00000538997.1_1_12:10460676-10464247:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2794189453125	2	537.277303	1072.54005	3.3418	0.0017955	1.2342	0.0006631	4.576	0.0024586	537.2777558921044	36.803	0.65302	36.803	36.647	37.3	0					23	13	3	0	0	0	0.2873	1	14302	14302		51.335	0	1	4503600	+		23678	14752	15364	15424	24015	24015					0.006685275098334387
LEEANRVL	8	Unmodified	_LEEANRVL_					0	0	0		ENST00000526352.5_1_11:6621466-6622302:-|nuORF;ENSG00000132275|ENST00000254605|RRP8	ENST00000526352.5_1_11:6621466-6622302:-|nuORF	ENST00000526352.5_1_11:6621466-6622302:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.263916015625	2	472.263999	942.513445	-0.5806	-0.0002742	-2.2341	-0.0010551	-2.8147	-0.0013293	472.26416107104137	26.661	0.23716	26.661	26.523	26.76	0					11	5	3	0	0	0	0.58597	1	9239	9239		51.335	0	1	318940			23679	3772	15365	15425	24016	24016					0.03988883409135724
LEEDHLGFLQ	10	Unmodified	_LEEDHLGFLQ_					0	0	0		ENST00000301887.8_1_11:64755941-64756001:-|nuORF	ENST00000301887.8_1_11:64755941-64756001:-|nuORF	ENST00000301887.8_1_11:64755941-64756001:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.86834716796875	3	400.868027	1199.58225	-0.38638	-0.00015489	0.61083	0.00024486	0.22445	8.9973E-05	400.86841240991913	28.523	0.36633	28.523	28.319	28.686	0					19	9	3	0	0	0	0.62149	1	10080	10080		31.634	5.5709	1	414090			23680	8495	15366	15426	24017	24017					-0.00955497081804424
LEEDYKKEI	9	Unmodified	_LEEDYKKEI_					0	0	0			REV__ENST00000533863.1_2_11:117073729-117073927:+|nuORF	REV__ENST00000533863.1_2_11:117073729-117073927:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.8006591796875	2	583.800611	1165.58667	-0.0049092	-2.866E-06	0.27938	0.00016311	0.27448	0.00016024	583.8007500214223	24.642	0.32751	24.642	24.546	24.873	0					24	11	4	0	0	0	0.0028263	1	7549	7549		129.42	5.3412	1	781910	+		23681	15430	15367	15427	24018	24018					0.010499673411231925
LEEEEQNEEE	10	Unmodified	_LEEEEQNEEE_					0	0	0		ENSG00000148229|ENST00000374171|POLE3	ENSG00000148229|ENST00000374171|POLE3	ENSG00000148229|ENST00000374171|POLE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	639.255126953125	2	639.254419	1276.49429	-0.39742	-0.00025405	1.2794	0.00081789	0.88203	0.00056384	639.2552946287226	13.009	0.18269	13.009	12.915	13.098	0					9	4	3	0	0	0	0.55603	1	3072	3072		39.253	15.73	1	1295100			23682	4816	15368	15428	24019	24019					-0.13290207253726294
LEEELDELK	9	Unmodified	_LEEELDELK_					0	0	0		CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN	CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant	CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2859497070312	2	559.284794	1116.55504	3.4697	0.0019406	-1.2784	-0.00071501	2.1913	0.0012255	559.284097843548	19.67	0.3701	19.67	19.557	19.927	0					16	7	4	0	0	0	0.047855	1	6132	6132		79.713	0	1	2166000			23683	575	15369	15429	24020	24020					0.0014197458713169908
LEEETVKEA	9	Unmodified	_LEEETVKEA_					0	0	0			REV__DNAI1|p.S258Ifs*17|1|0.34|ENSG00000122735|chr9:34493277-34493278|-/A|frameshift_variant	REV__DNAI1|p.S258Ifs*17|1|0.34|ENSG00000122735|chr9:34493277-34493278|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.265869140625	2	524.263862	1046.51317	0.56161	0.00029443	3.5982	0.0018864	4.1598	0.0021808	524.2658714714283	21.145	0.10299	21.145	21.065	21.168	0					8	3	3	0	0	0	0.20551	1	6023	6023		60.972	7.6205	1	84595	+		23684	12730	15370	15430	24021	24021					-0.008225811013744533
LEEETVLI	8	Unmodified	_LEEETVLI_					0	0	0			REV__ENSG00000103047|ENST00000261778|TANGO6	REV__ENSG00000103047|ENST00000261778|TANGO6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2607116699219	2	473.260591	944.506628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.839	1	31.839	31.339	32.339	0								0	0	0	1.7419	1	11631	11631		50.025	0	1		+		23685	13660	15371	15431	24022	24022					0.032155257379031355
LEEGAHVL	8	Unmodified	_LEEGAHVL_					0	0	0		TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant;ENSG00000160218|ENST00000291574|TRAPPC10	TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.73370361328125	2	434.232168	866.449782	-0.44879	-0.00019488	0.39277	0.00017055	-0.056017	-2.4325E-05	434.2324949912779	28.936	0.11305	28.936	28.878	28.991	0					4	2	2	0	0	0	0.55361	1	10673	10673		54.765	10.234	1	68967			23686	5350	15372	15432	24023	24023					0.01121522972061939
LEEIIIFQF	9	Unmodified	_LEEIIIFQF_					0	0	0			REV__SYCP2|p.S1456Afs*9|1|0.28|ENSG00000196074|chr20:59865820-59865820|T/-|frameshift_variant	REV__SYCP2|p.S1456Afs*9|1|0.28|ENSG00000196074|chr20:59865820-59865820|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3198852539062	2	576.320983	1150.62741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.049	1	22.049	21.549	22.549	0								0	0	0	0.25587	1	6429	6429		35.618	0	1		+		23687	17222	15373	15433	24024	24024					0.058123534513924824
LEEKTFTI	8	Unmodified	_LEEKTFTI_					0	0	0		ENST00000336184.6_1_1:211546970-211547078:+|nuORF	ENST00000336184.6_1_1:211546970-211547078:+|nuORF	ENST00000336184.6_1_1:211546970-211547078:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.76849365234375	2	490.768583	979.522613	0.59124	0.00029016	-0.73471	-0.00036057	-0.14346	-7.0407E-05	490.76811904650793	38.67	0.14294	38.67	38.596	38.739	0					12	5	3	0	0	0	0.53424	1	15179	15179		56.721	1.2168	1	191140			23688	8698	15374	15434	24025	24025					0.03203231974816845
LEELVRLS	8	Unmodified	_LEELVRLS_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7825927734375	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.706	1	29.706	29.206	30.206	0								0	0	0	1.7419	1	9696	9696		51.335	3.6781	1		+		23689	17693	15375	15435	24026	24026					0.06902340586009359
LEEMVTQACKT	11	Carbamidomethyl (C),Oxidation (M)	_LEEM(Oxidation (M))VTQAC(Carbamidomethyl (C))KT_	LEEMVTQAC(1)KT	LEEM(1)VTQACKT	LEEMVTQAC(56)KT	LEEM(56)VTQACKT	0	1	1			REV__ENSG00000113272|ENST00000231198|THG1L	REV__ENSG00000113272|ENST00000231198|THG1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	663.3076171875	2	663.30742	1324.60029	-0.10532	-6.9863E-05	0.60425	0.0004008	0.49893	0.00033094	663.3078283084744	21.347	0.36498	21.347	21.19	21.555	0					20	7	4	0	0	0	0.35529	1	6925	6925		56.434	9.977	1	2420300	+		23690	14031	15376	15436	24027	24027	528	530			-0.04902866213615198
LEEPGRAALL	10	Unmodified	_LEEPGRAALL_					0	0	0			REV__ENST00000589402.1_1_19:11493771-11494125:-|nuORF	REV__ENST00000589402.1_1_19:11493771-11494125:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8065795898438	2	534.806031	1067.59751	1.8521	0.00099054	-0.91108	-0.00048725	0.94107	0.00050329	534.8057355077427	38.209	0.15575	38.209	38.111	38.267	0					6	3	2	0	0	0	0.49411	1	15017	15017		45.972	11.8	1	116950	+		23691	17118	15377	15437	24028	24028					0.06641414506043475
LEEREVLL	8	Unmodified	_LEEREVLL_					0	0	0		nc|ENSG00000165923|Q5U5Z8-2|AGBL2;ENST00000529712.5_1_11:47690447-47736202:-|nuORF;ENSG00000165923|ENST00000525123|AGBL2	nc|ENSG00000165923|Q5U5Z8-2|AGBL2	nc|ENSG00000165923|Q5U5Z8-2|AGBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.78692626953125	2	500.787307	999.560061	-0.99648	-0.00049902	0.31457	0.00015753	-0.68191	-0.00034149	500.78752699885916	33.558	0.27499	33.558	33.48	33.755	0					13	10	2	0	0	0	0.64144	1	11276	11276		42.396	0	1	76448			23692	5842	15378	15438	24029	24029					0.06026323240439524
LEETIIQK	8	Unmodified	_LEETIIQK_					0	0	0		GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2811279296875	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.072	1	38.072	37.572	38.572	0								0	0	0	1.7419	1	14921	14921		47.916	3.7988	1				23693	2499	15379	15439	24030	24030					0.0617892086613665
LEEVAYPLLA	10	Unmodified	_LEEVAYPLLA_					0	0	0			REV__UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant	REV__UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.3099975585938	2	559.310615	1116.60668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.532	1	30.532	30.032	31.032	0								0	0	0	0.40002	1	9740	9740		30.504	2.6214	1		+		23694	13729	15380	15440	24031	24031					0.053037630717199136
LEEVRALV	8	Unmodified	_LEEVRALV_					0	0	0			REV__ENSG00000174842|ENST00000370360|GLMN	REV__ENSG00000174842|ENST00000370360|GLMN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.77667236328125	2	464.776742	927.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.001	1	39.001	38.501	39.501	0								0	0	0	1.7419	1	15323	15323		51.335	1.8939	1		+		23695	16587	15381	15441	24032	24032					0.07226357931574512
LEEVTQLL	8	Unmodified	_LEEVTQLL_					0	0	0			REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7685241699219	2	472.768583	943.522613	-0.026668	-1.2608E-05	0.47329	0.00022376	0.44662	0.00021115	472.7687227527111	31.933	0.11531	31.933	31.847	31.962	0					6	4	2	0	0	0	0.5676	1	10298	10298		53.351	0	1	51937	+		23696	13122	15382	15442	24033	24033					0.04859231974819522
LEEWAKRAD	9	Unmodified	_LEEWAKRAD_					0	0	0		tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1	tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1	tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.19268798828125	3	373.192734	1116.55637	0.84551	0.00031554	-1.0176	-0.00037975	-0.17205	-6.4206E-05	373.1923562796723	19.663	0.36595	19.663	19.511	19.877	0					14	7	4	0	0	0	0.40353	1	6271	6271		41.427	3.6151	1	590480			23697	22741	15383	15443	24034	24034					0.002756534665650179
LEFKDSKKI	9	Unmodified	_LEFKDSKKI_					0	0	0		tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.885009765625	3	369.88513	1106.63356	-1.0182	-0.00037661	1.0026	0.00037086	-0.01555	-5.7516E-06	369.88543903367366	23.808	0.83016	23.808	23.612	24.442	0					33	27	2	0	0	0	0.47473	1	7251	7251		35.152	0.97948	1	69254			23698	22874	15384	15444	24035	24035					0.08450871682907746
LEFLENAK	8	Unmodified	_LEFLENAK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;nc|ENSG00000159023|P11171-4|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;EPB41|p.T582Qfs*11|1|0.24|ENSG00000159023|chr1:29053205-29053205|A/-|frameshift_variant;nc|ENSG00000159023|P11171-7|EPB41	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.259765625	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.247	1	14.247	13.747	14.747	0								0	0	0	1.7419	1	3051	3051		23.042	2.0956	1				23699	5293	15385	15445	24036	24036					0.02454365177618456
LEFSATKL	8	Unmodified	_LEFSATKL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.7579345703125	2	454.758018	907.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.256	1	38.256	37.756	38.756	0								0	0	0	1.7419	1	12906	12906		40.778	1.972	1				23700	4092	15386	15446	24037	24037					0.04403266665940464
LEFSATKL	8	Unmodified	_LEFSATKL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.75726318359375	2	454.758018	907.501483	0.8781	0.00039932	-1.5348	-0.00069795	-0.65668	-0.00029863	454.75698290327523	38.396	0.24293	38.396	38.3	38.543	0					13	5	3	0	0	0	0.34592	1	15107	15107		77.318	8.8329	1	236170			23701	4092	15386	15446	24038	24038					0.04403266665940464
LEFTAHVL	8	Unmodified	_LEFTAHVL_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2578125	2	465.258185	928.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.703	1	42.703	42.203	43.203	0								0	0	0	1.7419	1	17058	17058		76.847	2.5916	1				23702	2191	15387	15447	24039	24039					0.03470686385821864
LEGAPKVK	8	Unmodified	_LEGAPKVK_					0	0	0			REV__nc|ENSG00000151651|P78325-2|ADAM8	REV__nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.2606506347656	2	421.260728	840.506903	-0.32438	-0.00013665	-0.044764	-1.8857E-05	-0.36914	-0.0001555	421.2606634440981	23.092	0.21089	23.092	22.939	23.15	0					9	4	3	0	0	0	0.49216	1	7791	7791		60.972	0.85368	1	403190	+		23703	15485	15388	15448	24040	24040					0.0802699024843605
LEGIFPAAL	9	Unmodified	_LEGIFPAAL_					0	0	0		ENST00000533277.5_1_11:66611269-66612734:+|nuORF;ENSG00000173653|ENST00000309657|RCE1	ENST00000533277.5_1_11:66611269-66612734:+|nuORF	ENST00000533277.5_1_11:66611269-66612734:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7660217285156	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.362	1	27.362	26.862	27.862	0								0	0	0	0.27166	1	8941	8941		40.573	3.4135	1				23704	6440	15389	15449	24041	24041					0.05463857045606346
LEGKIEIL	8	Unmodified	_LEGKIEIL_					0	0	0		nc|ENSG00000144395|Q8NCX0-2|CCDC150	nc|ENSG00000144395|Q8NCX0-2|CCDC150	nc|ENSG00000144395|Q8NCX0-2|CCDC150	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.78082275390625	2	457.781493	913.548434	0.72182	0.00033044	-1.7048	-0.00078042	-0.98296	-0.00044998	457.78069961837207	40.251	0.1324	40.251	40.168	40.301	0					10	5	2	0	0	0	0.48092	1	15844	15844		62.107	0	1	70663			23705	11565	15390	15450	24042	24042					0.08820126217085544
LEGKIIEA	8	Unmodified	_LEGKIIEA_					0	0	0			REV__ENSG00000187189|ENST00000420283|TSPYL4	REV__ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.7581481933594	2	436.758018	871.501483	0.742	0.00032407	2.6676	0.0011651	3.4096	0.0014892	436.7596667215208	29.49	0.25817	29.49	29.291	29.549	0					8	5	2	0	0	0	0.41	1	10825	10825		69.628	3.1983	1	271940	+		23706	17116	15391	15451	24043	24043					0.060592666659431416
LEGKLATL	8	Unmodified	_LEGKLATL_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7607727050781	2	422.760561	843.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.782	1	31.782	31.282	32.282	0								0	0	0	1.7419	1	11605	11605		79.451	0	1				23707	7377	15392	15452	24044	24044					0.07855570528568023
LEGKLATLS	9	Unmodified	_LEGKLATLS_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.276611328125	2	466.276575	930.538597	-0.6687	-0.0003118	1.4874	0.00069353	0.81868	0.00038173	466.27731556671057	32.619	0.25631	32.619	32.492	32.748	0					16	6	3	0	0	0	0.063171	1	12022	12022		90.601	7.8504	1	588740			23708	7377	15393	15453	24045	24045					0.07054938211717854
LEGLPLIK	8	Unmodified	_LEGLPLIK_					0	0	0		ENSG00000119929|ENST00000370476|CUTC	ENSG00000119929|ENST00000370476|CUTC	ENSG00000119929|ENST00000370476|CUTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2879333496094	2	441.786579	881.558604	-0.52346	-0.00023126	0.25247	0.00011154	-0.27099	-0.00011972	441.78671722202506	42.626	0.20363	42.626	42.522	42.725	0					8	5	2	0	0	0	0.27512	1	17021	17021		90.777	5.8611	1	63004			23709	3149	15394	15454	24046	24046					0.11308733942337312
LEGLQLSL	8	Unmodified	_LEGLQLSL_					0	0	0			REV__nc|ENSG00000180815|Q6ZN16-2|MAP3K15	REV__nc|ENSG00000180815|Q6ZN16-2|MAP3K15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7577209472656	2	436.758018	871.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.368	1	29.368	28.868	29.868	0								0	0	0	1.7419	1	9870	9870		96.19	0	1		+		23710	16821	15395	15455	24047	24047					0.06059266665965879
LEGQKISL	8	Unmodified	_LEGQKISL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2636413574219	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.788	1	25.788	25.288	26.288	0								0	0	0	1.7419	1	8067	8067		84.916	0	1		+	+	23711	12579	15396	15456	24048	24048					0.06458669040239329
LEGSNAYYC	9	Carbamidomethyl (C)	_LEGSNAYYC(Carbamidomethyl (C))_	LEGSNAYYC(1)		LEGSNAYYC(74)		0	1	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7234497070312	2	538.721307	1075.42806	3.3962	0.0018296	0.52201	0.00028122	3.9182	0.0021108	538.7215715990006	18.396	0.85378	18.396	17.899	18.752	0					46	17	5	0	0	0	0.1236	1	5484	5484		73.975	16.163	1	5735500			23712	5457	15397	15457	24049	24049	224				-0.1066364983882977
LEGSPLAG	8	Unmodified	_LEGSPLAG_					0	0	0			REV__nc|ENSG00000087303|Q14112-2|NID2	REV__nc|ENSG00000087303|Q14112-2|NID2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.2017517089844	2	372.200336	742.386119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.246	1	31.246	30.746	31.746	0								0	0	0	1.7419	1	11662	11662		42.474	5.446	1		+		23713	13383	15398	15458	24050	24050					0.004621625349614078
LEGTKALL	8	Unmodified	_LEGTKALL_					0	0	0		CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant;nc|ENSG00000100065|Q9BWT7-2|CARD10;CARD10|p.K896Rfs*9|1|0.27|ENSG00000100065|chr22:37492501-37492501|G/-|frameshift_variant;ENSG00000100065|ENST00000251973|CARD10	CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant	CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.7606506347656	2	422.760561	843.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.76	1	32.76	32.26	33.26	0								0	0	0	1.7419	1	10952	10952		44.117	0	1				23714	372	15399	15459	24051	24051					0.07855570528568023
LEHLGFGKK	9	Unmodified	_LEHLGFGKK_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.54150390625	3	343.534431	1027.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.339	1	19.339	18.839	19.839	0								0	0	0	0.23445	1	5219	5219		45.972	7.1661	1		+		23715	15181	15400	15460	24052	24052					0.06877753059802671
LEHNCLTW	8	Unmodified	_LEHNCLTW_					0	0	0			REV__ENSG00000187806|ENST00000341689|TMEM202	REV__ENSG00000187806|ENST00000341689|TMEM202	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2381591796875	2	508.236927	1014.4593	2.9692	0.001509	-0.079729	-4.0521E-05	2.8894	0.0014685	508.23689057277795	23.46	0.86162	23.46	23.252	24.113	0					47	17	6	0	0	0	0.28158	1	7943	7943		88.643	8.7036	1	14358000	+		23716	17140	15401	15461	24053	24053					-0.04735032014082208
LEHQVRVGF	9	Unmodified	_LEHQVRVGF_					0	0	0		ENSG00000158201|ENST00000289119|ABHD3;ENST00000579875.5_1_18:19244061-19284599:-|nuORF;ENST00000579982.1_1_18:19282269-19284734:-|nuORF;nc|ENSG00000158201|Q8WU67-2|ABHD3	ENSG00000158201|ENST00000289119|ABHD3;nc|ENSG00000158201|Q8WU67-2|ABHD3	nc|ENSG00000158201|Q8WU67-2|ABHD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.201904296875	3	362.201452	1083.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.696	1	28.696	28.196	29.196	0								0	0	0	0.30504	1	8982	8982		34.173	0	1				23717	5250;11606	15402	15462	24054	24054					0.04407967428710435
LEHQVRVGF	9	Unmodified	_LEHQVRVGF_					0	0	0		ENSG00000158201|ENST00000289119|ABHD3;ENST00000579875.5_1_18:19244061-19284599:-|nuORF;ENST00000579982.1_1_18:19282269-19284734:-|nuORF;nc|ENSG00000158201|Q8WU67-2|ABHD3	ENSG00000158201|ENST00000289119|ABHD3;nc|ENSG00000158201|Q8WU67-2|ABHD3	nc|ENSG00000158201|Q8WU67-2|ABHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.2012939453125	3	362.201452	1083.58253	0.47962	0.00017372	-1.4678	-0.00053162	-0.98814	-0.0003579	362.201090040421	28.926	0.41075	28.926	28.835	29.245	0					15	10	2	0	0	0	0.1115	1	10283	10283		76.774	34.378	1	379630			23718	5250;11606	15402	15462	24055	24055					0.04407967428710435
LEHSIKPL	8	Unmodified	_LEHSIKPL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.779296875	2	468.779285	935.544017	-1.1351	-0.0005321	0.60079	0.00028164	-0.53427	-0.00025046	468.7795603270374	27.659	0.69628	27.659	27.296	27.992	0					38	24	2	0	0	0	0.61938	1	8894	8894		45.952	3.4775	1	86483			23719	6529	15403	15463	24056	24056					0.07366661794185347
LEHVLSQSI	9	Unmodified	_LEHVLSQSI_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2852783203125	2	513.284931	1024.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.521	1	22.521	22.021	23.021	0								0	0	0	0.18645	1	7328	7328		52.937	3.4952	1				23720	4616	15404	15464	24057	24057					0.04401439097682669
LEIGLEELGL	10	Unmodified	_LEIGLEELGL_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.3070678710938	2	543.308072	1084.60159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.858	1	20.858	20.358	21.358	0								0	0	0	0.36846	1	5894	5894		27.882	17.017	1		+		23721	13440	15405	15465	24058	24058					0.06267459209107074
LEIKEKQK	8	Unmodified	_LEIKEKQK_					0	0	0			REV__POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant	REV__POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3110046386719	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.775	1	21.775	21.275	22.275	0								0	0	0	1.7419	1	7270	7270		38.806	0	1		+		23722	15504	15406	15466	24059	24059					0.10062602511425212
LEIKSTVKAL	10	Unmodified	_LEIKSTVKAL_					0	0	0		RSPH1|p.G23Vfs*120|1|0.4|ENSG00000160188|chr21:42493066-42493066|C/-|frameshift_variant	RSPH1|p.G23Vfs*120|1|0.4|ENSG00000160188|chr21:42493066-42493066|C/-|frameshift_variant	RSPH1|p.G23Vfs*120|1|0.4|ENSG00000160188|chr21:42493066-42493066|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.9007568359375	3	367.90078	1100.68051	0.76132	0.00028009	-0.73682	-0.00027107	0.024504	9.0149E-06	367.9004674526642	21.179	0.18792	21.179	21.093	21.281	0					13	4	4	0	0	0	0.39827	1	6704	6704		56.434	6.4003	1	707810			23723	22362	15407	15467	24060	24060					0.1341973123403477
LEIQHTTAL	9	Unmodified	_LEIQHTTAL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2847290039062	2	513.284931	1024.55531	-0.46702	-0.00023971	0.56012	0.0002875	0.093104	4.7789E-05	513.2851850612377	32.79	0.13261	32.79	32.701	32.834	0					6	3	2	0	0	0	0.15163	1	12497	12497		67.494	14.557	1	140300			23724	4459	15408	15468	24061	24061					0.044014390976599316
LEKAENQVL	9	Unmodified	_LEKAENQVL_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31;ENST00000563143.2_1_16:32882346-32883351:+|nuORF	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2905883789062	2	522.290214	1042.56587	0.80846	0.00042225	-2.119	-0.0011067	-1.3106	-0.00068449	522.2901267237233	26.477	0.24299	26.477	26.38	26.623	0					19	8	3	0	0	0	0.13726	1	8041	8041		70.816	5.3508	1	157990			23725	7107	15409	15469	24062	24062					0.04629421752088092
LEKAENQVL	9	Unmodified	_LEKAENQVL_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31;ENST00000563143.2_1_16:32882346-32883351:+|nuORF	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2905883789062	2	522.290214	1042.56587	0.084053	4.39E-05	-1.3384	-0.00069903	-1.2543	-0.00065513	522.2905549807372	26.759	0.36264	26.759	26.564	26.927	0					17	8	3	0	0	0	0.012936	1	9253	9253		134.77	22.658	1	1188400			23726	7107	15409	15469	24063	24063					0.04629421752088092
LEKAENQVL	9	Unmodified	_LEKAENQVL_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31;ENST00000563143.2_1_16:32882346-32883351:+|nuORF	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2904052734375	2	522.290214	1042.56587	0.40166	0.00020978	0.30424	0.0001589	0.70589	0.00036868	522.2901998897672	26.464	0.29092	26.464	26.376	26.667	0					17	10	2	0	0	0	0.02953	1	8330	8330		109.48	16.335	1	435300			23727	7107	15409	15469	24064	24064					0.04629421752088092
LEKAENQVL	9	Unmodified	_LEKAENQVL_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31;ENST00000563143.2_1_16:32882346-32883351:+|nuORF	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2904052734375	2	522.290214	1042.56587	1.7847	0.00093213	-1.2923	-0.00067498	0.49236	0.00025715	522.2894567740864	26.719	0.36684	26.719	26.611	26.978	0					13	7	2	0	0	0	0.019258	1	9607	9607		123.21	27.175	1	3459600			23728	7107	15409	15469	24065	24065					0.04629421752088092
LEKAENQVL	9	Unmodified	_LEKAENQVL_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31;ENST00000563143.2_1_16:32882346-32883351:+|nuORF	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2908325195312	2	522.290214	1042.56587	-1.3065	-0.00068235	1.5492	0.00080911	0.24269	0.00012676	522.2913425819273	26.548	0.27371	26.548	26.413	26.687	0					15	6	3	0	0	0	0.082776	1	8570	8570		83.647	18.182	1	477680			23729	7107	15409	15469	24066	24066					0.04629421752088092
LEKAENQVL	9	Unmodified	_LEKAENQVL_					0	0	0		nc|ENSG00000185825|P51572-2|BCAP31;ENSG00000185825|ENST00000345046|BCAP31;ENST00000563143.2_1_16:32882346-32883351:+|nuORF	nc|ENSG00000185825|P51572-2|BCAP31	nc|ENSG00000185825|P51572-2|BCAP31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2903442382812	2	522.290214	1042.56587	3.3985	0.001775	-3.3884	-0.0017697	0.010058	5.2533E-06	522.2886441358075	26.679	0.41474	26.679	26.57	26.985	0					14	8	2	0	0	0	0.012936	1	9464	9464		134.77	36.184	1	4009500			23730	7107	15409	15469	24067	24067					0.04629421752088092
LEKAFSGNK	9	Unmodified	_LEKAFSGNK_					0	0	0		ENST00000522362.6_1_8:26363853-26363976:-|nuORF	ENST00000522362.6_1_8:26363853-26363976:-|nuORF	ENST00000522362.6_1_8:26363853-26363976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2716064453125	2	497.271824	992.529095	-0.70365	-0.00034991	0.33029	0.00016424	-0.37336	-0.00018566	497.27196445493956	21.996	0.16738	21.996	21.887	22.054	0					5	3	2	0	0	0	0.25716	1	7261	7261		54.776	5.3348	1	563850			23731	10328	15410	15470	24068	24068					0.03253169926199462
LEKAKAKEP	9	Unmodified	_LEKAKAKEP_					0	0	0		ENST00000574864.1_1_6:137221518-137222013:-|nuORF	ENST00000574864.1_1_6:137221518-137222013:-|nuORF	ENST00000574864.1_1_6:137221518-137222013:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.3031005859375	2	507.303124	1012.5917	-0.1799	-9.1266E-05	0.17642	8.9499E-05	-0.0034823	-1.7666E-06	507.30327262917046	40.62	0.2749	40.62	40.55	40.825	0					8	5	2	0	0	0	0.36892	1	16141	16141		44.377	0.26039	1	60587			23732	10820	15411	15471	24069	24069					0.08590315994376851
LEKCAMTAL	9	Carbamidomethyl (C)	_LEKC(Carbamidomethyl (C))AMTAL_	LEKC(1)AMTAL		LEKC(57)AMTAL		0	1	0		ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.76220703125	2	518.76192	1035.50929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.814	1	31.814	31.314	32.314	0								0	0	0	0.1633	1	10575	10575		56.721	6.6965	1				23733	4007	15412	15472	24070	24070	173				-0.007046654004625452
LEKCFEELVI	10	Unmodified	_LEKCFEELVI_					0	0	0			REV__ENSG00000151553|ENST00000369248|FHIP2A	REV__ENSG00000151553|ENST00000369248|FHIP2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.8255004882812	2	611.823032	1221.63151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.343	1	41.343	40.843	41.843	0								0	0	0	0.12385	1	16439	16439		75.043	6.4175	1		+		23734	15480	15413	15473	24071	24071					0.029560748827634598
LEKCSVFQCLL	11	Unmodified	_LEKCSVFQCLL_					0	0	0		RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	641.8305053710938	2	641.830334	1281.64612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.492	1	33.492	32.992	33.992	0								0	0	0	0.42444	1	12823	12823		31.634	0.10446	1				23735	5684	15414	15474	24072	24072					0.01655823759301711
LEKDCAALA	9	Carbamidomethyl (C)	_LEKDC(Carbamidomethyl (C))AALA_	LEKDC(1)AALA		LEKDC(88)AALA		0	1	0			REV__CEP350|p.W1900C|1|0.34|ENSG00000135837|chr1:180075154-180075154|G/T|missense_variant	REV__CEP350|p.W1900C|1|0.34|ENSG00000135837|chr1:180075154-180075154|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.75048828125	2	495.749867	989.485181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.978	1	23.978	23.478	24.478	0								0	0	0	0.04624	1	7275	7275		87.696	8.2454	1		+		23736	12432	15415	15475	24073	24073	487				-0.009981825624549856
LEKDCAALA	9	Carbamidomethyl (C)	_LEKDC(Carbamidomethyl (C))AALA_	LEKDC(1)AALA		LEKDC(88)AALA		0	1	0			REV__CEP350|p.W1900C|1|0.34|ENSG00000135837|chr1:180075154-180075154|G/T|missense_variant	REV__CEP350|p.W1900C|1|0.34|ENSG00000135837|chr1:180075154-180075154|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7492980957031	2	495.749867	989.485181	0.10489	5.1997E-05	-0.2826	-0.0001401	-0.17772	-8.8104E-05	495.7496418995363	24.012	0.12078	24.012	23.926	24.047	0					5	3	2	0	0	0	0.071197	1	7425	7425		87.754	8.0417	1	63533	+		23737	12432	15415	15475	24074	24074	487				-0.009981825624549856
LEKEIREQ	8	Unmodified	_LEKEIREQ_					0	0	0			REV__ENSG00000157470|ENST00000288228|FAM81A	REV__ENSG00000157470|ENST00000288228|FAM81A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7892456054688	2	522.787838	1043.56112	1.7969	0.00093941	1.6722	0.00087422	3.4692	0.0018136	522.7886893723577	31.195	0.32032	31.195	31.077	31.398	0					18	7	3	0	0	0	0.32597	1	11743	11743		79.713	7.8351	1	662220	+		23738	15659	15416	15476	24075	24075					0.04108537609340601
LEKENKELL	9	Unmodified	_LEKENKELL_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.3189697265625	2	558.318971	1114.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.996	1	23.996	23.496	24.496	0								0	0	0	0.051298	1	7018	7018		85.862	0	1				23739	3808	15417	15477	24076	24076					0.0706626395767671
LEKENKELL	9	Unmodified	_LEKENKELL_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.3201293945312	2	558.318971	1114.62339	-0.15543	-8.6778E-05	2.1657	0.0012092	2.0103	0.0011224	558.3204757937759	24.238	0.11417	24.238	24.18	24.294	0					4	2	2	0	0	0	0.047855	1	8469	8469		96.034	0	1	350870			23740	3808	15417	15477	24077	24077					0.0706626395767671
LEKERISQE	9	Unmodified	_LEKERISQE_					0	0	0		tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3043212890625	2	566.303852	1130.59315	1.6957	0.00096028	-0.95183	-0.00053903	0.74387	0.00042125	566.3032354579557	18.463	0.16856	18.463	18.353	18.522	0					7	3	3	0	0	0	0.11898	1	5547	5547		75.043	0	1	1035200			23741	22742	15418	15478	24078	24078					0.033079052924676944
LEKEVAAL	8	Unmodified	_LEKEVAAL_					0	0	0		XRCC6|p.H486Pfs*12|1|0.12|ENSG00000196419|chr22:41658287-41658287|A/-|frameshift_variant;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6;XRCC6|p.R403Afs*25|1|0.35|ENSG00000196419|chr22:41653603-41653603|C/-|frameshift_variant	XRCC6|p.H486Pfs*12|1|0.12|ENSG00000196419|chr22:41658287-41658287|A/-|frameshift_variant	XRCC6|p.H486Pfs*12|1|0.12|ENSG00000196419|chr22:41658287-41658287|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7578430175781	2	436.758018	871.501483	0.75607	0.00033022	-1.2345	-0.00053917	-0.47841	-0.00020895	436.7575073246335	29.809	0.30855	29.809	29.7	30.008	0					10	6	2	0	0	0	0.25143	1	11068	11068		98.629	16.389	1	802620			23742	7358	15419	15479	24079	24079					0.060592666659431416
LEKFTRSPE	9	Unmodified	_LEKFTRSPE_					0	0	0		nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;nc|ENSG00000148120|Q8N6M6-3|AOPEP	nc|ENSG00000148120|Q8N6M6-4|AOPEP	nc|ENSG00000148120|Q8N6M6-4|AOPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7962646484375	2	553.795663	1105.57677	0.61579	0.00034102	-0.072443	-4.0119E-05	0.54334	0.0003009	553.795523452089	28.727	0.13845	28.727	28.631	28.769	0					6	3	2	0	0	0	0.11898	1	10194	10194		75.043	0	1	261540			23743	4810	15420	15480	24080	24080					0.028208241263882883
LEKGKEAVV	9	Unmodified	_LEKGKEAVV_					0	0	0		ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27	ENST00000471144.1_1_20:47852884-47860241:+|nuORF	ENST00000471144.1_1_20:47852884-47860241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.78961181640625	2	486.78985	971.565146	-0.5466	-0.00026608	-0.041087	-2.0001E-05	-0.58768	-0.00028608	486.7898812645549	18.813	0.095354	18.813	18.768	18.863	0					4	2	2	0	0	0	0.19952	1	5714	5714		61.691	12.155	1	200810			23744	3360	15421	15481	24081	24081					0.07822627103041668
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.811279296875	2	515.810782	1029.60701	1.3156	0.0006786	-0.88549	-0.00045675	0.43011	0.00022186	515.8103954577449	24.83	0.21262	24.83	24.719	24.931	0					10	6	2	0	0	0	0.022698	1	7384	7384		90.601	16.346	1	405170			23745	7711	15422	15482	24082	24082					0.09339182791586609
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8110961914062	2	515.810782	1029.60701	1.2163	0.00062737	-0.71012	-0.00036629	0.50615	0.00026108	515.8104144145478	25.155	0.36869	25.155	25.019	25.388	0					14	8	2	0	0	0	0.0051572	1	8546	8546		129.42	16.01	1	3231700			23746	7711	15422	15482	24083	24083					0.09339182791586609
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.8110961914062	2	515.810782	1029.60701	-0.075573	-3.8982E-05	0.6316	0.00032579	0.55603	0.0002868	515.8110920022328	24.879	0.2314	24.879	24.806	25.037	0					18	7	3	0	0	0	0.015992	1	7659	7659		112.41	22.041	1	674380			23747	7711	15422	15482	24084	24084					0.09339182791586609
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8109130859375	2	515.810782	1029.60701	0.75333	0.00038857	-0.38411	-0.00019813	0.36921	0.00019044	515.8105675543384	24.96	0.19539	24.96	24.86	25.055	0					9	4	3	0	0	0	0.01942	1	7851	7851		106.68	21.768	1	509410			23748	7711	15422	15482	24085	24085					0.09339182791586609
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8109741210938	2	515.810782	1029.60701	0.16887	8.7105E-05	0.0075668	3.903E-06	0.17644	9.1008E-05	515.8107022226287	25.068	0.21607	25.068	24.963	25.179	0					7	4	2	0	0	0	0.082776	1	8741	8741		58.23	4.8785	1	792690			23749	7711	15422	15482	24086	24086					0.09339182791586609
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8109130859375	2	515.810782	1029.60701	1.5146	0.00078124	-1.0961	-0.00056536	0.41852	0.00021588	515.8102680875637	25.053	0.36916	25.053	24.946	25.315	0					18	7	4	0	0	0	0.012115	1	8714	8714		120.31	35.39	1	4240100			23750	7711	15422	15482	24087	24087					0.09339182791586609
LEKGLKEA	8	Unmodified	_LEKGLKEA_					0	0	0			REV__DDIAS|p.L534Yfs*16|2|0.29|ENSG00000165490|chr11:82932934-82932934|T/-|frameshift_variant	REV__DDIAS|p.L534Yfs*16|2|0.29|ENSG00000165490|chr11:82932934-82932934|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2633361816406	2	444.263468	886.512382	0.541	0.00024035	-0.81611	-0.00036257	-0.27511	-0.00012222	444.26306832291704	26.026	0.21831	26.026	25.967	26.185	0					9	4	3	0	0	0	0.24844	1	9280	9280		104.06	0	1	886510	+		23751	12684	15423	15483	24088	24088					0.06458669040239329
LEKGLLKAL	9	Unmodified	_LEKGLLKAL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.82586669921875	2	492.826235	983.637917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.174	1	34.174	33.674	34.674	0								0	0	0	0.22284	1	12071	12071		47.657	0	1				23752	7796	15424	15484	24089	24089					0.14544380896461462
LEKGLLPIF	9	Unmodified	_LEKGLLPIF_					0	0	0		ENST00000285279.9_1_7:55539736-55539814:-|nuORF	ENST00000285279.9_1_7:55539736-55539814:-|nuORF	ENST00000285279.9_1_7:55539736-55539814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3201904296875	2	515.320786	1028.62702	1.4086	0.00072587	-0.17983	-9.2673E-05	1.2287	0.00063319	515.3207386387114	48.531	0.1732	48.531	48.434	48.607	0					17	10	2	0	0	0	0.26904	1	18359	18359		53.351	0.41475	1	87895			23753	8425	15425	15485	24090	24090					0.11384978522164602
LEKGSLSAM	9	Unmodified	_LEKGSLSAM_					0	0	0		nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	nc|ENSG00000197448|Q9Y2Q3-3|GSTK1	nc|ENSG00000197448|Q9Y2Q3-3|GSTK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2471618652344	2	468.24696	934.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.775	1	27.775	27.275	28.275	0								0	0	0	0.14881	1	8603	8603		60.118	10.677	1				23754	7461	15426	15486	24091	24091					0.00950718925878391
LEKIADPTL	9	Unmodified	_LEKIADPTL_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;ENST00000530079.5_1_16:70072981-70099679:-|nuORF;ENST00000533264.5_1_16:70069634-70099679:-|nuORF;nc|ENSG00000179889|Q6P996-2|PDXDC1;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2894287109375	2	500.289682	998.564812	0.90669	0.00045361	-3.4221	-0.0017121	-2.5154	-0.0012584	500.2890737041812	35.308	0.40753	35.308	35.136	35.544	0					39	11	5	0	0	0	0.037712	1	13668	13668		101.46	21.747	1	1317600			23755	6784	15427	15487	24092	24092					0.06547207383187015
LEKIQEAL	8	Unmodified	_LEKIQEAL_					0	0	0			REV__RASGRP2|p.R494Afs*25|1|0.15|ENSG00000068831|chr11:64730128-64730128|C/-|frameshift_variant	REV__RASGRP2|p.R494Afs*25|1|0.15|ENSG00000068831|chr11:64730128-64730128|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.27606201171875	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.951	1	31.951	31.451	32.451	0								0	0	0	1.7419	1	11059	11059		60.118	1.3363	1		+		23756	13153	15428	15488	24093	24093					0.06502938211713172
LEKKFGIQL	9	Unmodified	_LEKKFGIQL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.329345703125	2	538.329142	1074.64373	0.23296	0.00012541	0.41368	0.0002227	0.64664	0.0003481	538.3295625909259	35.725	0.19963	35.725	35.629	35.829	0					10	5	2	0	0	0	0.04067	1	13416	13416		98.582	18.869	1	155910			23757	6760	15429	15489	24094	24094					0.10939479408148145
LEKKIEQEL	9	Unmodified	_LEKKIEQEL_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B;CHMP4B|p.E41G|1|0.06|ENSG00000101421|chr20:33811590-33811590|A/G|missense_variant	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.3271484375	2	565.326796	1128.63904	1.2164	0.00068767	-0.92741	-0.00052429	0.289	0.00016338	565.326597706257	26.325	0.34896	26.325	26.243	26.592	0					28	11	4	0	0	0	0.0043467	1	7977	7977		160.82	14.037	1	1148800			23758	2119	15430	15490	24095	24095					0.07986550474720389
LEKKIEQEL	9	Unmodified	_LEKKIEQEL_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B;CHMP4B|p.E41G|1|0.06|ENSG00000101421|chr20:33811590-33811590|A/G|missense_variant	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.3269653320312	2	565.326796	1128.63904	-1.126	-0.00063655	0.82543	0.00046664	-0.30057	-0.00016992	565.327716088761	26.421	0.31962	26.421	26.319	26.639	0					19	7	4	0	0	0	0.0043467	1	8490	8490		160.82	1.546	1	1068900			23759	2119	15430	15490	24096	24096					0.07986550474720389
LEKKIVTE	8	Unmodified	_LEKKIVTE_					0	0	0			REV__tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	REV__tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2919921875	2	480.292225	958.569897	0.048761	2.342E-05	-0.42337	-0.00020334	-0.37461	-0.00017992	480.2919396973558	24.984	0.14283	24.984	24.909	25.052	0					6	4	2	0	0	0	0.27512	1	7462	7462		90.777	8.4716	1	229970	+		23760	21667	15431	15491	24097	24097					0.08895511245827947
LEKKKDYKL	9	Unmodified	_LEKKKDYKL_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000486563.1_1_1:38478474-38482093:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.9043884277344	3	388.904413	1163.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.301	1	17.301	16.801	17.801	0								0	0	0	0.080575	1	5113	5113		77.318	27.284	1				23761	6965	15432	15492	24098	24098					0.1161113360831223
LEKKLEIS	8	Unmodified	_LEKKLEIS_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.29193115234375	2	480.292225	958.569897	0.67413	0.00032378	-1.1002	-0.00052841	-0.42606	-0.00020463	480.2915948135769	25.248	0.27117	25.248	25.138	25.409	0					10	5	3	0	0	0	0.41701	1	8950	8950		68.787	0	1	986900			23762	22640	15433	15493	24099	24099					0.08895511245816579
LEKKLSTP	8	Unmodified	_LEKKLSTP_					0	0	0			REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant	REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2789001464844	2	458.279118	914.543683	-0.40967	-0.00018774	-0.19115	-8.7602E-05	-0.60083	-0.00027535	458.2789293470661	30.497	0.21883	30.497	30.391	30.61	0					15	8	3	0	0	0	0.46013	1	9708	9708		64.207	4.089	1	194510	+		23763	13655	15434	15494	24100	24100					0.08299242074338053
LEKKLTSP	8	Unmodified	_LEKKLTSP_					0	0	0			REV__nc|ENSG00000138835|P49796|RGS3	REV__nc|ENSG00000138835|P49796|RGS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2788391113281	2	458.279118	914.543683	-0.98359	-0.00045076	0.70204	0.00032173	-0.28155	-0.00012903	458.2793615023017	30.545	0.27447	30.545	30.445	30.719	0					22	10	3	0	0	0	0.29286	1	10044	10044		84.916	0	1	399270	+		23764	21041	15435	15495	24101	24101					0.08299242074338053
LEKKLTSP	8	Unmodified	_LEKKLTSP_					0	0	0			REV__nc|ENSG00000138835|P49796|RGS3	REV__nc|ENSG00000138835|P49796|RGS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2789306640625	2	458.279118	914.543683	0.13493	6.1837E-05	-0.69918	-0.00032042	-0.56424	-0.00025858	458.27887585687864	30.547	0.16354	30.547	30.468	30.632	0					8	4	2	0	0	0	0.29212	1	10426	10426		85.161	2.4103	1	377030	+		23765	21041	15435	15495	24102	24102					0.08299242074338053
LEKKTIADL	9	Unmodified	_LEKKTIADL_					0	0	0			REV__tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	REV__tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8099975585938	2	515.810782	1029.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.953	1	24.953	24.453	25.453	0								0	0	0	0.095784	1	7861	7861		47.657	5.2612	1		+		23766	21768	15436	15496	24103	24103					0.09339182791563871
LEKLEDTVK	9	Unmodified	_LEKLEDTVK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.8733825683594	3	358.87289	1073.59684	1.4309	0.00051351	-0.030582	-1.0975E-05	1.4003	0.00050254	358.8729226920558	19.123	0.31332	19.123	19.017	19.33	0					17	6	4	0	0	0	0.50858	1	6005	6005		38.754	7.2238	1	1972100			23767	7501	15437	15497	24104	24104					0.06298575066330159
LEKLGATLS	9	Unmodified	_LEKLGATLS_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.27642822265625	2	466.276575	930.538597	-0.43795	-0.0002042	0.414	0.00019304	-0.023952	-1.1168E-05	466.2767820875608	32.343	0.15806	32.343	32.289	32.447	0					10	6	2	0	0	0	0.023928	1	10454	10454		115.49	3.0831	1	133820	+		23768	20946	15438	15498	24105	24105					0.07054938211717854
LEKLGATLS	9	Unmodified	_LEKLGATLS_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.27630615234375	2	466.276575	930.538597	-1.1842	-0.00055217	0.49874	0.00023255	-0.68547	-0.00031962	466.27690608668627	32.636	0.24807	32.636	32.511	32.759	0					9	6	2	0	0	0	0.023928	1	12410	12410		115.49	3.0831	1	192330	+		23769	20946	15438	15498	24106	24106					0.07054938211717854
LEKLGVTV	8	Unmodified	_LEKLGVTV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7680969238281	2	429.768386	857.522219	-2.8259	-0.0012145	1.7154	0.00073723	-1.1105	-0.00047727	429.769106569127	34.277	0.15559	34.277	34.221	34.376	0					8	5	2	0	0	0	0.26795	1	12124	12124		93.143	16.369	1	312420			23770	4222	15439	15499	24107	24107					0.08775857045611701
LEKLNQQLL	9	Unmodified	_LEKLNQQLL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8302001953125	2	549.829506	1097.64446	0.53485	0.00029408	0.045796	2.518E-05	0.58065	0.00031926	549.8294513305091	35.226	0.57894	35.226	35.061	35.64	0					48	15	5	0	0	0	0.063823	1	13167	13167		90.37	2.1929	1	5433500			23771	6416	15440	15500	24108	24108					0.09954274057213297
LEKLNQQLL	9	Unmodified	_LEKLNQQLL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8298950195312	2	549.829506	1097.64446	0.22037	0.00012116	0.88228	0.00048511	1.1027	0.00060627	549.8297580274292	35.21	0.15895	35.21	35.123	35.281	0					7	4	2	0	0	0	0.19605	1	13637	13637		62.107	0	1	114880			23772	6416	15440	15500	24109	24109					0.09954274057213297
LEKLNQQLL	9	Unmodified	_LEKLNQQLL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.829833984375	2	549.829506	1097.64446	1.8227	0.0010022	-1.4609	-0.00080323	0.36184	0.00019895	549.8286197445415	35.17	0.62133	35.17	35.015	35.637	0					35	12	4	0	0	0	0.078509	1	13539	13539		85.161	1.5138	1	8853300			23773	6416	15440	15500	24110	24110					0.09954274057213297
LEKLTAVD	8	Unmodified	_LEKLTAVD_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant;nc|ENSG00000081913|O60346-2|PHLPP1;PHLPP1|p.T1236Nfs*38|2|0.39|ENSG00000081913|chr18:62972653-62972654|-/A|frameshift_variant	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.755615234375	2	444.755475	887.496398	-1.1606	-0.00051619	1.6944	0.00075358	0.53374	0.00023738	444.75605980309285	28.558	0.1326	28.558	28.52	28.653	0					8	5	2	0	0	0	0.5676	1	9224	9224		53.351	2.016	1	36628			23774	1665	15441	15501	24111	24111					0.048149628033343106
LEKMMRIR	8	Unmodified	_LEKMMRIR_					0	0	0			REV__ENST00000513321.1_1_4:178231246-178274506:+|nuORF	REV__ENST00000513321.1_1_4:178231246-178274506:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.2044677734375	3	359.540423	1075.59944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.143	1	18.143	17.643	18.643	0								0	0	0	1.7419	1	4472	4472		38.806	0.99462	1		+		23775	13907	15442	15502	24112	24112					0.0646642871865879
LEKMTEFKEI	10	Unmodified	_LEKMTEFKEI_					0	0	0		tr|U7SXP5|U7SXP5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00912PE=4SV=1	tr|U7SXP5|U7SXP5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00912PE=4SV=1	tr|U7SXP5|U7SXP5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00912PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	634.3301391601562	2	634.333764	1266.65297	-0.24927	-0.00015812	-1.3235	-0.00083953	-1.5728	-0.00099765	634.3329655052149	30.538	0.38474	30.538	30.249	30.633	0					14	8	3	0	0	0	0.536	1	11346	11346		41.427	2.1738	1	365470			23776	22869	15443	15503	24113	24113					0.03031459911494494
LEKPLNLV	8	Unmodified	_LEKPLNLV_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2894592285156	2	463.289485	924.564418	0.64338	0.00029807	-1.2838	-0.00059477	-0.64043	-0.0002967	463.2889538521046	34.814	0.31444	34.814	34.691	35.005	0					13	8	2	0	0	0	0.63077	1	12995	12995		44.117	0	1	409550			23777	7616	15444	15504	24114	24114					0.0991183245398588
LEKQGLFF	8	Unmodified	_LEKQGLFF_					0	0	0			REV__ENSG00000105641|ENST00000222248|SLC5A5	REV__ENSG00000105641|ENST00000222248|SLC5A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.271484375	2	491.273835	980.533118	-2.7181	-0.0013353	-1.8005	-0.00088455	-4.5186	-0.0022199	491.27287842628283	38.627	0.19748	38.627	38.515	38.713	0					22	10	3	0	0	0	0.72892	1	13796	13796		29.842	1.9593	1	99365	+		23778	13785	15445	15505	24115	24115					0.04207259419922593
LEKQLTAI	8	Unmodified	_LEKQLTAI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2789001464844	2	458.279118	914.543683	-0.64472	-0.00029546	0.21822	0.00010001	-0.4265	-0.00019546	458.2791634809318	30.779	0.31365	30.779	30.641	30.955	0					15	7	3	0	0	0	0.26795	1	11143	11143		93.143	2.5424	1	1184400	+		23779	15602;22247;21074	15446	15506	24116	24116					0.08299242074315316
LEKRLTLEP	9	Unmodified	_LEKRLTLEP_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;TTBK2|p.N876Kfs*2|2|0.34|ENSG00000128881|chr15:42752618-42752619|-/T|frameshift_variant;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8301391601562	2	549.829506	1097.64446	1.7102	0.00094034	-1.0679	-0.00058715	0.64236	0.00035319	549.8286942982203	35.218	0.69443	35.218	35.064	35.759	0					57	19	5	0	0	0	0.026538	1	13610	13610		112.41	8.3541	1	11781000			23780	3567	15447	15507	24117	24117					0.09954274057213297
LEKRNHVR	8	Unmodified	_LEKRNHVR_					0	0	0			REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.3114624023438	2	526.309606	1050.60466	3.4608	0.0018215	0.018616	9.7978E-06	3.4795	0.0018313	526.3095964842694	29.354	0.65593	29.354	29.126	29.781	0					41	13	4	0	0	0	0.44433	1	10744	10744		65.803	5.6849	1	1693900	+		23781	16624	15448	15508	24118	24118					0.08138191897114666
LEKRWVQL	8	Unmodified	_LEKRWVQL_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.318359375	2	536.319109	1070.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.452	1	17.452	16.952	17.952	0								0	0	0	1.7419	1	4353	4353		3.9852	0	1		+		23782	14244	15449	15509	24119	24119					0.09117728468186215
LEKSMEPSL	9	Unmodified	_LEKSMEPSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;NCKAP1L|p.L134Sfs*11|1|0.04|ENSG00000123338|chr12:54508424-54508425|-/AGTGCTCAATATATTCCGAGTGAATCTAT|frameshift_variant	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2664184570312	2	517.26535	1032.51615	1.3617	0.00070437	-0.17276	-8.9363E-05	1.189	0.00061501	517.265469088567	31.957	0.2064	31.957	31.847	32.053	0					12	8	2	0	0	0	0.16806	1	10299	10299		65.465	12.114	1	103600			23783	3311	15450	15510	24120	24120					0.0011897075178239902
LEKSMEPSL	9	Unmodified	_LEKSMEPSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;NCKAP1L|p.L134Sfs*11|1|0.04|ENSG00000123338|chr12:54508424-54508425|-/AGTGCTCAATATATTCCGAGTGAATCTAT|frameshift_variant	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2654418945312	2	517.26535	1032.51615	1.2891	0.00066683	0.49236	0.00025468	1.7815	0.00092151	517.2660925734085	32.226	0.65355	32.226	31.822	32.475	0					28	16	3	0	0	0	0.01873	1	11821	11821		124.08	39.165	1	608030			23784	3311	15450	15510	24121	24121					0.0011897075178239902
LEKSMEPSL	9	Unmodified	_LEKSMEPSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;NCKAP1L|p.L134Sfs*11|1|0.04|ENSG00000123338|chr12:54508424-54508425|-/AGTGCTCAATATATTCCGAGTGAATCTAT|frameshift_variant	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2658081054688	2	517.26535	1032.51615	0.037606	1.9452E-05	0.3789	0.00019599	0.4165	0.00021544	517.2657783342876	32.041	0.21226	32.041	31.909	32.121	0					14	8	3	0	0	0	0.13267	1	10642	10642		71.877	9.7701	1	104980			23785	3311	15450	15510	24122	24122					0.0011897075178239902
LEKSMEPSL	9	Unmodified	_LEKSMEPSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;NCKAP1L|p.L134Sfs*11|1|0.04|ENSG00000123338|chr12:54508424-54508425|-/AGTGCTCAATATATTCCGAGTGAATCTAT|frameshift_variant	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2655639648438	2	517.26535	1032.51615	1.5173	0.00078483	-1.1246	-0.00058172	0.39266	0.00020311	517.2646732948449	32.203	0.37959	32.203	32.081	32.46	0					17	8	3	0	0	0	0.022525	1	12220	12220		117.81	30.115	1	646550			23786	3311	15450	15510	24123	24123					0.0011897075178239902
LEKSMEPSL	9	Unmodified	_LEKSMEPSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;NCKAP1L|p.L134Sfs*11|1|0.04|ENSG00000123338|chr12:54508424-54508425|-/AGTGCTCAATATATTCCGAGTGAATCTAT|frameshift_variant	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2664794921875	2	517.26535	1032.51615	0.8796	0.00045499	0.17388	8.9943E-05	1.0535	0.00054493	517.2656071047991	32.001	0.22718	32.001	31.923	32.15	0					10	6	3	0	0	0	0.098791	1	11074	11074		79.713	2.866	1	115150			23787	3311	15450	15510	24124	24124					0.0011897075178239902
LEKSMEPSL	9	Unmodified	_LEKSMEPSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;NCKAP1L|p.L134Sfs*11|1|0.04|ENSG00000123338|chr12:54508424-54508425|-/AGTGCTCAATATATTCCGAGTGAATCTAT|frameshift_variant	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2655029296875	2	517.26535	1032.51615	1.5516	0.00080259	-1.2342	-0.00063841	0.31739	0.00016418	517.2646764058594	32.177	0.37019	32.177	32.051	32.421	0					17	7	3	0	0	0	0.011389	1	12110	12110		138.06	40.59	1	996360			23788	3311	15450	15510	24125	24125					0.0011897075178239902
LEKTEFTL	8	Unmodified	_LEKTEFTL_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L;FILIP1L|p.R478Q|1|0.29|ENSG00000168386|chr3:99850243-99850243|C/T|missense_variant;FILIP1L|p.L673Yfs*5|1|0.1|ENSG00000168386|chr3:99849658-99849658|A/-|frameshift_variant	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7677307128906	2	490.768583	979.522613	-2.7577	-0.0013534	3.5462	0.0017404	0.78845	0.00038695	490.7695800057696	38.438	0.11289	38.438	38.373	38.486	0					7	5	2	0	0	0	0.62915	1	13756	13756		44.377	0	1	35748			23789	6086	15451	15511	24126	24126					0.03203231974816845
LEKTEFTL	8	Unmodified	_LEKTEFTL_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L;FILIP1L|p.R478Q|1|0.29|ENSG00000168386|chr3:99850243-99850243|C/T|missense_variant;FILIP1L|p.L673Yfs*5|1|0.1|ENSG00000168386|chr3:99849658-99849658|A/-|frameshift_variant	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7685241699219	2	490.768583	979.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.643	1	38.643	38.143	39.143	0								0	0	0	1.7419	1	15210	15210		47.657	0	1				23790	6086	15451	15511	24127	24127					0.03203231974816845
LEKTGVAV	8	Unmodified	_LEKTGVAV_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	408.7452697753906	2	408.744911	815.475269	0.6308	0.00025784	0.35617	0.00014558	0.98697	0.00040342	408.7449596496533	23.693	0.16614	23.693	23.622	23.788	0					10	5	3	0	0	0	0.64144	1	6890	6890		42.396	0	1	138880			23791	7403	15452	15512	24128	24128					0.06014997494480667
LEKTGVAV	8	Unmodified	_LEKTGVAV_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	408.7449951171875	2	408.744911	815.475269	0.12626	5.1607E-05	-0.19901	-8.1344E-05	-0.072751	-2.9737E-05	408.7448199393104	23.769	0.14339	23.769	23.685	23.828	0					5	3	2	0	0	0	0.35045	1	7320	7320		76.774	15.802	1	101170			23792	7403	15452	15512	24129	24129					0.06014997494480667
LEKTGVAV	8	Unmodified	_LEKTGVAV_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.744873046875	2	408.744911	815.475269	-0.52589	-0.00021495	0.44106	0.00018028	-0.084826	-3.4672E-05	408.7450545920651	23.938	0.21572	23.938	23.829	24.045	0					10	4	3	0	0	0	0.24806	1	8200	8200		104.75	22.442	1	1438700			23793	7403	15452	15512	24130	24130					0.06014997494480667
LEKTGVAV	8	Unmodified	_LEKTGVAV_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.7447509765625	2	408.744911	815.475269	0.77715	0.00031766	-0.88016	-0.00035976	-0.103	-4.2102E-05	408.744465047379	23.923	0.16523	23.923	23.863	24.028	0					8	3	3	0	0	0	0.2451	1	8191	8191		110.12	22.366	1	695380			23794	7403	15452	15512	24131	24131					0.06014997494480667
LEKTVKNCL	9	Carbamidomethyl (C)	_LEKTVKNC(Carbamidomethyl (C))L_	LEKTVKNC(1)L		LEKTVKNC(88)L		0	1	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENST00000511494.5_1_5:134670668-134681802:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.80810546875	2	552.807716	1103.60088	0.22254	0.00012302	-0.062351	-3.4468E-05	0.16019	8.8556E-05	552.8075537581212	21.731	0.15696	21.731	21.668	21.825	0					7	4	2	0	0	0	0.07136	1	6288	6288		87.696	32.92	1	107330			23795	2818	15453	15513	24132	24132	111				0.05322341288388088
LEKTVKNCL	9	Carbamidomethyl (C)	_LEKTVKNC(Carbamidomethyl (C))L_	LEKTVKNC(1)L		LEKTVKNC(100)L		0	1	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENST00000511494.5_1_5:134670668-134681802:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.80810546875	2	552.807716	1103.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.956	1	21.956	21.456	22.456	0								0	0	0	0.018912	1	7230	7230		101.25	31.625	1				23796	2818	15453	15513	24133	24133	111				0.05322341288388088
LEKTYSAKL	9	Unmodified	_LEKTYSAKL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.80322265625	2	526.802957	1051.59136	0.60047	0.00031633	-0.025647	-1.3511E-05	0.57482	0.00030282	526.8029959579763	23.766	0.066441	23.766	23.715	23.782	0					4	2	2	0	0	0	0.21222	1	6922	6922		53.089	12.311	1	48688			23797	5385	15454	15514	24134	24134					0.06762896274517516
LEKTYSAKL	9	Unmodified	_LEKTYSAKL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.5377502441406	3	351.53773	1051.59136	0.49488	0.00017397	-0.54707	-0.00019232	-0.052195	-1.8349E-05	351.53759410397953	24.05	0.14122	24.05	23.949	24.09	0					7	3	3	0	0	0	0.18416	1	8052	8052		63.534	10.597	1	533880			23798	5385	15454	15514	24135	24135					0.06762896274517516
LEKTYSAKL	9	Unmodified	_LEKTYSAKL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.8032836914062	2	526.802957	1051.59136	0.10188	5.3669E-05	0.95337	0.00050224	1.0552	0.00055591	526.8033775543757	24.049	0.18211	24.049	23.949	24.131	0					7	4	2	0	0	0	0.17062	1	8054	8054		49.536	18.006	1	345420			23799	5385	15454	15514	24136	24136					0.06762896274517516
LEKVQRAN	8	Unmodified	_LEKVQRAN_					0	0	0		ADCYAP1R1|p.I38V|1|0.09|ENSG00000078549|chr7:31064891-31064891|A/G|missense_variant	ADCYAP1R1|p.I38V|1|0.09|ENSG00000078549|chr7:31064891-31064891|A/G|missense_variant	ADCYAP1R1|p.I38V|1|0.09|ENSG00000078549|chr7:31064891-31064891|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2783203125	2	479.277441	956.540328	-0.11412	-5.4697E-05	0.69451	0.00033286	0.58038	0.00027816	479.27780769692805	48.266	0.61845	48.266	47.989	48.608	0					71	39	2	0	0	0	0.73426	1	15162	15162		29.15	2.4566	1	122170			23800	70	15455	15515	24137	24137					0.060319920203255606
LEKVQRAN	8	Unmodified	_LEKVQRAN_					0	0	0		ADCYAP1R1|p.I38V|1|0.09|ENSG00000078549|chr7:31064891-31064891|A/G|missense_variant	ADCYAP1R1|p.I38V|1|0.09|ENSG00000078549|chr7:31064891-31064891|A/G|missense_variant	ADCYAP1R1|p.I38V|1|0.09|ENSG00000078549|chr7:31064891-31064891|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2780456542969	2	479.277441	956.540328	0.90559	0.00043403	-0.89879	-0.00043077	0.0067978	3.258E-06	479.27690439770316	47.684	0.44652	47.684	47.559	48.006	0					52	24	3	0	0	0	0.68432	1	18987	18987		35.618	5.1146	1	146900			23801	70	15455	15515	24138	24138					0.060319920203255606
LEKYKNIN	8	Unmodified	_LEKYKNIN_					0	0	0		tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2869567871094	2	511.287474	1020.5604	1.2236	0.00062563	-1.7927	-0.00091658	-0.56905	-0.00029095	511.2867112771521	33.949	0.51239	33.949	33.799	34.311	0					18	11	3	0	0	0	0.58597	1	13010	13010		51.335	0	1	1128200			23802	22630	15456	15516	24139	24139					0.05093742960286818
LELAIYLDN	9	Unmodified	_LELAIYLDN_					0	0	0			REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2893676757812	2	532.28714	1062.55973	0.72009	0.00038329	3.3806	0.0017995	4.1007	0.0021828	532.2886951567335	35.988	0.2656	35.988	35.833	36.098	0					7	5	2	0	0	0	0.22377	1	13957	13957		58.782	2.0609	1	132510	+		23803	22124	15457	15517	24140	24140					0.030949035205594555
LELAKIAAAN	10	Unmodified	_LELAKIAAAN_					0	0	0			REV__UBE3A|p.N105Tfs*7|1|0.35|ENSG00000114062|chr15:25375523-25375523|G/-|frameshift_variant	REV__UBE3A|p.N105Tfs*7|1|0.35|ENSG00000114062|chr15:25375523-25375523|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.302734375	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.457	1	40.457	39.957	40.957	0								0	0	0	0.33107	1	16065	16065		45.972	3.5761	1		+		23804	14064	15458	15518	24141	24141					0.08590315994376851
LELALKSL	8	Unmodified	_LELALKSL_					0	0	0		tr|U7SV01|U7SV01_FUSNUWGRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01456PE=4SV=1	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|78|1|anti-sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|78|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7837829589844	2	443.784036	885.553519	2.601	0.0011543	-3.2464	-0.0014407	-0.64538	-0.00028641	443.78250068643416	42.893	0.15202	42.893	42.802	42.954	0					8	5	2	0	0	0	0.5676	1	17153	17153		53.351	7.3995	1	92555			23805	20741	15459	15519	24142	24142					0.10616430079699057
LELDAVTLA	9	Unmodified	_LELDAVTLA_					0	0	0		ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF	ENSG00000142494|ENST00000270570|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7686462402344	2	472.768583	943.522613	0.22788	0.00010774	-0.40693	-0.00019238	-0.17904	-8.4646E-05	472.768483808371	32.213	0.25397	32.213	32.099	32.353	0					11	6	2	0	0	0	0.35045	1	11807	11807		45.952	1.8352	1	314610			23806	4493	15460	15520	24143	24143					0.048592319748081536
LELEVAER	8	Unmodified	_LELEVAER_					0	0	0		ENST00000434123.2_1_9:42267014-42267233:+|nuORF;nc|ENSG00000290618|P0DPF6|CDRT15P3	ENST00000434123.2_1_9:42267014-42267233:+|nuORF	ENST00000434123.2_1_9:42267014-42267233:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7637634277344	2	479.763832	957.513111	-0.30924	-0.00014836	-0.23841	-0.00011438	-0.54764	-0.00026274	479.76395813606945	21.253	0.25365	21.253	21.152	21.406	0					8	5	2	0	0	0	0.28427	1	6140	6140		87.754	0.057861	1	103410			23807	9516	15461	15521	24144	24144					0.032654636892857525
LELFHVFY	8	Unmodified	_LELFHVFY_					0	0	0			REV__ENST00000517937.1_1_6:56599965-56716690:-|nuORF	REV__ENST00000517937.1_1_6:56599965-56716690:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.280029296875	2	534.28166	1066.54877	-0.52678	-0.00028145	-2.0958	-0.0011197	-2.6226	-0.0014012	534.2806172682032	34.331	0.16204	34.331	34.265	34.427	0					11	7	2	0	0	0	0.68754	1	11561	11561		35.201	8.5078	1	86188	+		23808	19924	15462	15522	24145	24145					0.01815545936960916
LELGWHKLL	9	Unmodified	_LELGWHKLL_					0	0	0		nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.2204895019531	3	370.221965	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.851	1	21.851	21.351	22.351	0								0	0	0	0.22284	1	7007	7007		47.657	3.2801	1				23809	5367	15463	15523	24146	24146					0.09454899127990757
LELHYQEFI	9	Unmodified	_LELHYQEFI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant;DSP|p.D582N|1|0.45|ENSG00000096696|chr6:7571425-7571425|G/A|missense_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.3056640625	2	596.305864	1190.59717	0.72696	0.00043349	-1.9605	-0.001169	-1.2335	-0.00073554	596.3048790865664	23.834	0.45394	23.834	23.647	24.101	0					25	10	4	0	0	0	0.30841	1	7959	7959		34.173	0	1	485240			23810	1919	15464	15524	24147	24147					0.009499947861968394
LELIGAIN	8	Unmodified	_LELIGAIN_					0	0	0		ENST00000481973.1_1_1:59142496-59147488:-|nuORF;ENST00000401044.7_1_1:59134235-59156019:-|nuORF;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENSG00000162601|ENST00000472487|MYSM1	ENST00000481973.1_1_1:59142496-59147488:-|nuORF	ENST00000481973.1_1_1:59142496-59147488:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.75201416015625	2	421.752736	841.490919	-1.2222	-0.00051545	-0.020742	-8.7481E-06	-1.2429	-0.0005242	421.75278196251486	31.946	0.1095	31.946	31.855	31.965	0					6	4	2	0	0	0	0.66372	1	10619	10619		38.806	0	1	34385			23811	5475	15465	15525	24148	24148					0.06383284011519663
LELLEGLNKG	10	Unmodified	_LELLEGLNKG_					0	0	0		ENST00000484530.5_1_3:55545064-55640922:-|nuORF	ENST00000484530.5_1_3:55545064-55640922:-|nuORF	ENST00000484530.5_1_3:55545064-55640922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.5451965332031	3	362.544885	1084.61282	0.48768	0.00017681	-0.06326	-2.2935E-05	0.42443	0.00015387	362.5449405740391	20.357	0.16551	20.357	20.246	20.412	0					5	3	2	0	0	0	0.7005	1	6597	6597		27.047	6.2102	1	127850			23812	9995	15466	15526	24149	24149					0.07390281303219126
LELNAQFIP	9	Unmodified	_LELNAQFIP_					0	0	0			REV__nc|ENSG00000167258|Q9NYV4-3|CDK12	REV__nc|ENSG00000167258|Q9NYV4-3|CDK12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.787109375	2	522.78985	1043.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.702	1	31.702	31.202	32.202	0								0	0	0	0.27025	1	10527	10527		40.778	1.5253	1		+		23813	12404	15467	15527	24150	24150					0.04510627103036313
LELPDSTA	8	Unmodified	_LELPDSTA_					0	0	0			REV__nc|ENSG00000130816|P26358-3|DNMT1	REV__nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.21600341796875	2	423.216183	844.417813	-0.026666	-1.1286E-05	-0.6764	-0.00028626	-0.70306	-0.00029755	423.2160113069261	31.348	0.29944	31.348	31.266	31.566	0					9	7	2	0	0	0	0.44433	1	10794	10794		65.803	15.779	1	98014	+		23814	14598	15468	15528	24151	24151					-0.010618895017614705
LELPQLTQ	8	Unmodified	_LELPQLTQ_					0	0	0		ENST00000529652.1_1_17:80551717-80553973:+|nuORF	ENST00000529652.1_1_17:80551717-80553973:+|nuORF	ENST00000529652.1_1_17:80551717-80553973:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2681884765625	2	471.26875	940.522947	-0.41981	-0.00019784	-0.57705	-0.00027195	-0.99686	-0.00046979	471.2683593222624	28.249	0.23233	28.249	28.108	28.34	0					11	7	2	0	0	0	0.73426	1	8794	8794		29.15	2.4566	1	62605			23815	10413	15469	15529	24152	24152					0.05030651694653443
LELQERKE	8	Unmodified	_LELQERKE_					0	0	0			REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7881469726562	2	522.787838	1043.56112	1.6254	0.00084973	1.4726	0.00076984	3.098	0.0016196	522.7883064793956	31.137	0.55952	31.137	31.011	31.571	0					29	11	5	0	0	0	0.34592	1	11612	11612		77.318	0	1	812920	+		23816	14062	15470	15530	24153	24153					0.04108537609340601
LELQGGDRVI	10	Unmodified	_LELQGGDRVI_					0	0	0		ENSG00000169733|ENST00000310496|RFNG;ENST00000584463.1_1_17:80008413-80009233:-|nuORF;ENST00000584515.1_1_17:80008413-80009420:-|nuORF;ENST00000580953.5_1_17:80007881-80009420:-|nuORF	ENSG00000169733|ENST00000310496|RFNG;ENST00000580953.5_1_17:80007881-80009420:-|nuORF	ENST00000580953.5_1_17:80007881-80009420:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3096923828125	2	550.308938	1098.60332	1.1539	0.00063501	0.38667	0.00021279	1.5406	0.0008478	550.3090292065896	31.669	0.12494	31.669	31.593	31.718	0					5	3	2	0	0	0	0.48965	1	10942	10942		46.457	0	1	49980			23817	6181;10870	15471	15531	24154	24154					0.05796513017708094
LELQKGCL	8	Unmodified	_LELQKGCL_					0	0	0		ENST00000460006.5_1_20:5171123-5171372:+|nuORF	ENST00000460006.5_1_20:5171123-5171372:+|nuORF	ENST00000460006.5_1_20:5171123-5171372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.25164794921875	2	452.252046	902.489538	-1.1938	-0.0005399	0.53989	0.00024417	-0.65392	-0.00029574	452.2523119215715	35.095	0.37579	35.095	34.962	35.337	0					29	16	2	0	0	0	0.73426	1	11838	11838		29.15	0	1	63026			23818	9717	15472	15532	24155	24155					0.0343932665111879
LELQKTCQP	9	Unmodified	_LELQKTCQP_					0	0	0		ENST00000457767.5_3_22:40796774-40798180:+|nuORF	ENST00000457767.5_3_22:40796774-40798180:+|nuORF	ENST00000457767.5_3_22:40796774-40798180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.85748291015625	3	353.854953	1058.54303	3.043	0.0010768	3.2052	0.0011342	6.2483	0.002211	353.85578285775745	26.375	0.36821	26.375	26.117	26.486	0					14	7	3	0	0	0	0.37197	1	9325	9325		35.152	0	1	1212500			23819	9702	15473	15533	24156	24156					0.016100793629448162
LELRATPEP	9	Unmodified	_LELRATPEP_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2848510742188	2	513.284931	1024.55531	0.012211	6.2676E-06	-0.33267	-0.00017075	-0.32046	-0.00016449	513.284698376527	32.823	0.20593	32.823	32.737	32.943	0					8	5	2	0	0	0	0.25716	1	12093	12093		54.776	0	1	150270			23820	5721	15474	15534	24157	24157					0.044014390976599316
LELRFQTAI	9	Unmodified	_LELRFQTAI_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.8180541992188	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.942	1	25.942	25.442	26.442	0								0	0	0	0.3063	1	7827	7827		19.997	3.5236	1		+		23821	15511	15475	15535	24158	24158					0.07702004885709357
LELRLNAV	8	Unmodified	_LELRLNAV_					0	0	0			REV__PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	REV__PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.285400390625	2	464.284734	926.554916	-0.74579	-0.00034626	0.58454	0.00027139	-0.16125	-7.4866E-05	464.2852048328336	34.941	0.38969	34.941	34.827	35.217	0					37	17	4	0	0	0	0.59773	1	11849	11849		49.442	5.3247	1	352970	+		23822	14227	15476	15536	24159	24159					0.08870064168468161
LELRQTLAL	9	Unmodified	_LELRQTLAL_					0	0	0			REV__ENSG00000185963|ENST00000356884|BICD2	REV__ENSG00000185963|ENST00000356884|BICD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.82470703125	2	528.824224	1055.63389	0.1102	5.8274E-05	0.51353	0.00027157	0.62373	0.00032984	528.8245935121965	34.99	0.24888	34.99	34.904	35.153	0					12	6	3	0	0	0	0.33044	1	13090	13090		47.657	3.2801	1	371620	+		23823	17060	15477	15537	24160	24160					0.10830291402749026
LELSGSRLEQ	10	Unmodified	_LELSGSRLEQ_					0	0	0		ENSG00000179826|ENST00000621697|MRGPRX3;ENSG00000170255|ENST00000526914|MRGPRX1	ENSG00000179826|ENST00000621697|MRGPRX3	ENSG00000179826|ENST00000621697|MRGPRX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3048095703125	2	566.303852	1130.59315	1.4507	0.00082154	0.48812	0.00027642	1.9388	0.001098	566.3041456076395	18.187	0.086662	18.187	18.133	18.22	0					6	3	2	0	0	0	0.2538	1	4486	4486		72.879	9.3454	1	124540			23824	6221	15478	15538	24161	24161					0.033079052924676944
LELSLNAL	8	Unmodified	_LELSLNAL_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7578430175781	2	436.758018	871.501483	-0.9034	-0.00039457	0.53276	0.00023269	-0.37064	-0.00016188	436.7583097727212	29.541	0.19451	29.541	29.486	29.68	0					11	7	2	0	0	0	0.49216	1	9620	9620		60.972	3.1607	1	161210	+		23825	15181	15479	15539	24162	24162					0.060592666659431416
LELSVPGK	8	Unmodified	_LELSVPGK_					0	0	0			REV__ENST00000377897.8_1_11:62574741-62574918:-|nuORF	REV__ENST00000377897.8_1_11:62574741-62574918:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.752685546875	2	421.752736	841.490919	1.0181	0.00042938	-1.1447	-0.00048277	-0.12658	-5.3385E-05	421.75227745811765	32.118	0.37503	32.118	31.899	32.274	0					18	9	3	0	0	0	0.58597	1	11748	11748		51.335	1.8939	1	195010	+		23826	18738	15480	15540	24163	24163					0.06383284011531032
LELYKVVQ	8	Unmodified	_LELYKVVQ_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2934265136719	2	496.294768	990.574983	-0.060952	-3.025E-05	-0.41553	-0.00020623	-0.47648	-0.00023648	496.2946284999224	36.323	0.14371	36.323	36.262	36.406	0					12	7	2	0	0	0	0.61938	1	11902	11902		45.952	3.5558	1	78660			23827	3687	15481	15541	24164	24164					0.07931815108440787
LEMACTLRTL	10	Oxidation (M)	_LEM(Oxidation (M))ACTLRTL_		LEM(1)ACTLRTL		LEM(100)ACTLRTL	0	0	1		ENST00000375286.7_1_17:73059416-73059569:+|nuORF	ENST00000375286.7_1_17:73059416-73059569:+|nuORF	ENST00000375286.7_1_17:73059416-73059569:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.8005981445312	2	583.799034	1165.58352	3.2214	0.0018806	-0.27905	-0.00016291	2.9423	0.0017177	583.7988598551509	24.796	0.35298	24.796	24.691	25.044	0					25	7	4	0	0	0	0.073977	1	8609	8609		101.25	101.25	1	6650300			23828	9030	15482	15542	24165	24165		362			0.0073467769109356595
LEMMMKIL	8	Oxidation (M)	_LEMM(Oxidation (M))MKIL_		LEM(0.129)M(0.742)M(0.129)KIL		LEM(-7.6)M(7.6)M(-7.6)KIL	0	0	1		ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7692260742188	2	512.765617	1023.51668	0.010824	5.55E-06	2.341	0.0012004	2.3518	0.0012059	513.2678316148734	35.279	0.68994	35.279	35.061	35.751	0					38	18	4	0	0	0	0.54629	1	13180	13180		55.504	12.64	3	705980			23829	9084	15483	15543	24166	24166		363			0.005863508756647207
LEMPFLLL	8	Unmodified	_LEMPFLLL_					0	0	0			REV__ENST00000293826.4_1_17:7464239-7464377:+|nuORF	REV__ENST00000293826.4_1_17:7464239-7464377:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2842102050781	2	488.282815	974.551076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.901	1	41.901	41.401	42.401	0								0	0	0	1.7419	1	15904	15904		37.028	3.5129	1		+		23830	18165	15484	15544	24167	24167					0.0627825835041449
LENEQVQKL	9	Unmodified	_LENEQVQKL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8012084960938	2	550.800946	1099.58734	0.56027	0.0003086	-0.22121	-0.00012184	0.33905	0.00018675	550.8013579500919	27.205	0.42832	27.205	27.114	27.542	0					12	10	2	0	0	0	0.012936	1	9484	9484		134.77	14.46	1	550580			23831	4042	15485	15545	24168	24168					0.04152806780825813
LENIELNK	8	Unmodified	_LENIELNK_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.771484375	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.41	1	26.41	25.91	26.91	0								0	0	0	1.7419	1	8499	8499		82.241	0	1				23832	1975	15486	15546	24169	24169					0.04185750206340799
LENPKQVVI	9	Unmodified	_LENPKQVVI_					0	0	0		ENST00000313486.11_1_17:1422693-1422885:-|nuORF	ENST00000313486.11_1_17:1422693-1422885:-|nuORF	ENST00000313486.11_1_17:1422693-1422885:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.3108520507812	2	520.310949	1038.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.44	1	37.44	36.94	37.94	0								0	0	0	0.3119	1	13404	13404		32.812	1.2826	1				23833	8570	15487	15547	24170	24170					0.08958602511438585
LENQSHETL	9	Unmodified	_LENQSHETL_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7598876953125	2	535.759278	1069.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.48	1	22.48	21.98	22.98	0								0	0	0	0.17415	1	6623	6623		54.722	10.606	1				23834	3808	15488	15548	24171	24171					-0.027969296670335098
LENQSHETL	9	Unmodified	_LENQSHETL_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7596435546875	2	535.759278	1069.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.711	1	22.711	22.211	23.211	0								0	0	0	0.21054	1	7726	7726		49.442	1.7842	1				23835	3808	15488	15548	24172	24172					-0.027969296670335098
LENSLIDIM	9	Oxidation (M)	_LENSLIDIM(Oxidation (M))_		LENSLIDIM(1)		LENSLIDIM(51)	0	0	1		CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;CPEB2|p.C544Vfs*31|5|0.34|ENSG00000137449|chr4:15066234-15066234|T/-|frameshift_variant;ENSG00000137449|ENST00000538197|CPEB2;ENST00000503926.1_1_4:15009003-15018907:+|nuORF;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2717895507812	2	532.270632	1062.52671	-1.2651	-0.00067337	1.6952	0.00090232	0.43014	0.00022895	532.271713497616	32.618	0.16623	32.618	32.529	32.695	0					6	5	2	0	0	0	0.2873	1	11349	11349		51.335	7.2187	1	43162			23836	681	15489	15549	24173	24173		33			-0.002050465937827539
LENTITGKP	9	Unmodified	_LENTITGKP_					0	0	0			REV__ENST00000506323.1_1_4:101395197-101439143:-|nuORF	REV__ENST00000506323.1_1_4:101395197-101439143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7713317871094	2	486.771657	971.528761	0.70387	0.00034262	-2.5821	-0.0012569	-1.8782	-0.00091427	486.7709606083592	26.539	0.45081	26.539	26.368	26.819	0					18	10	3	0	0	0	0.056004	1	9177	9177		93.143	5.4468	1	1248300	+		23837	12793	15490	15550	24174	24174					0.04185750206340799
LENVDKVL	8	Unmodified	_LENVDKVL_					0	0	0		SPTBN4|p.A126V|1|0.3|ENSG00000160460|chr19:40490130-40490130|C/T|missense_variant	SPTBN4|p.A126V|1|0.3|ENSG00000160460|chr19:40490130-40490130|C/T|missense_variant	SPTBN4|p.A126V|1|0.3|ENSG00000160460|chr19:40490130-40490130|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2701721191406	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.08	1	34.08	33.58	34.58	0								0	0	0	1.7419	1	11478	11478		44.117	1.7207	1				23838	22488	15491	15551	24175	24175					0.05582651694669494
LEPHRPGSLP	10	Unmodified	_LEPHRPGSLP_					0	0	0		ENST00000412901.5_1_3:9965766-9969866:+|nuORF	ENST00000412901.5_1_3:9965766-9969866:+|nuORF	ENST00000412901.5_1_3:9965766-9969866:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.802734375	2	551.803823	1101.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.359	1	41.359	40.859	41.859	0								0	0	0	0.39665	1	16446	16446		31.53	2.3803	1				23839	9326	15492	15552	24176	24176					0.04635950083138596
LEPKVALL	8	Unmodified	_LEPKVALL_					0	0	0		CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.7867126464844	2	441.786579	881.558604	0.57047	0.00025202	-0.33831	-0.00014946	0.23216	0.00010256	441.7863134045985	42.733	0.1547	42.733	42.611	42.766	0					12	7	2	0	0	0	0.44433	1	16158	16158		65.803	0	1	148800			23840	380	15493	15553	24177	24177					0.11308733942325944
LEPLGVLF	8	Unmodified	_LEPLGVLF_					0	0	0		ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2659912109375	2	444.265479	886.516405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.68	1	46.68	46.18	47.18	0								0	0	0	1.7419	1	18672	18672		23.037	0	1				23841	3056	15494	15554	24178	24178					0.0686075853394641
LEPLGVLFPS	10	Unmodified	_LEPLGVLFPS_					0	0	0		ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.3068237304688	2	536.307875	1070.6012	-1.3888	-0.00074483	-1.3528	-0.00072549	-2.7416	-0.0014703	536.3070433868238	32.31	0.25904	32.31	32.188	32.447	0					13	7	2	0	0	0	0.24256	1	11212	11212		74.255	15.473	1	432440			23842	3056	15495	15555	24179	24179					0.06872084279893897
LEPLHELA	8	Unmodified	_LEPLHELA_					0	0	0			REV__ENSG00000204033|ENST00000372113|LRIT2	REV__ENSG00000204033|ENST00000372113|LRIT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2554016113281	2	461.255643	920.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.995	1	33.995	33.495	34.495	0								0	0	0	1.7419	1	13061	13061		50.025	5.9077	1		+		23843	17464	15496	15556	24180	24180					0.03330382523188291
LEPNVPQPK	9	Unmodified	_LEPNVPQPK_					0	0	0			REV__ENSG00000189253|ENST00000329862|TRIM64B	REV__ENSG00000189253|ENST00000329862|TRIM64B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.28753662109375	2	511.287474	1020.5604	-1.7562	-0.00089794	1.3424	0.00068633	-0.41387	-0.00021161	511.2882735686637	33.686	0.28751	33.686	33.56	33.848	0					16	8	3	0	0	0	0.30951	1	11831	11831		49.442	1.7842	1	256010	+		23844	17215	15497	15557	24181	24181					0.05093742960286818
LEPQVIKV	8	Unmodified	_LEPQVIKV_					0	0	0			REV__ENSG00000134538|ENST00000256958|SLCO1B1	REV__ENSG00000134538|ENST00000256958|SLCO1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2891540527344	2	463.289485	924.564418	-0.47619	-0.00022061	0.072302	3.3497E-05	-0.40389	-0.00018712	463.28951521361745	34.742	0.2618	34.742	34.635	34.897	0					11	5	3	0	0	0	0.49216	1	13358	13358		60.972	4.2509	1	425730	+		23845	14751	15498	15558	24182	24182					0.09911832453997249
LEPVNRKL	8	Unmodified	_LEPVNRKL_					0	0	0		tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7975769042969	2	484.798009	967.581465	-1.2356	-0.000599	1.2637	0.00061265	0.028159	1.3651E-05	484.79852056461226	35.772	0.27388	35.772	35.617	35.891	0					26	13	3	0	0	0	0.77246	1	12083	12083		24.203	0	1	105570			23846	22915	15499	15559	24183	24183					0.09637753059814713
LEQALNRR	8	Unmodified	_LEQALNRR_					0	0	0			REV__MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant	REV__MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2897033691406	2	500.28834	998.562127	2.9219	0.0014618	-3.1147	-0.0015582	-0.19278	-9.6446E-05	500.28822525216754	35.253	0.47129	35.253	35.097	35.568	0					27	9	4	0	0	0	0.46905	1	13581	13581		63.306	2.3343	1	1732600	+		23847	20875	15500	15560	24184	24184					0.06278796768890516
LEQALVIEEQ	10	Unmodified	_LEQALVIEEQ_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.7031860351562	2	586.313886	1170.61322	-0.22053	-0.0001293	-2.0928	-0.0012271	-2.3134	-0.0013564	586.3129152056591	13.009	0.81665	13.009	12.87	13.687	0					41	18	4	0	0	0	0.67464	1	3310	3310		19.997	0	1	28088000			23848	2680;6204	15501	15561	24185	24185					0.03473656232426947
LEQASGASSSQ	11	Unmodified	_LEQASGASSSQ_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7462158203125	2	532.746367	1063.47818	0.12827	6.8335E-05	-0.36152	-0.0001926	-0.23325	-0.00012426	532.7463309237663	28.119	0.21832	28.119	28.032	28.25	0					9	5	3	0	0	0	0.11572	1	9911	9911		85.862	6.1492	1	164040			23849	6266	15502	15562	24186	24186					-0.0510182390933096
LEQATLTL	8	Unmodified	_LEQATLTL_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.75555419921875	2	444.755475	887.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.778	1	28.778	28.278	29.278	0								0	0	0	1.7419	1	10466	10466		69.628	3.1983	1		+		23850	17446	15503	15563	24187	24187					0.04814962803345679
LEQDRVQSL	9	Unmodified	_LEQDRVQSL_					0	0	0		nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L;HBS1L|p.G196Dfs*40|1|0.3|ENSG00000112339|chr6:134997611-134997611|T/-|frameshift_variant;nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L;nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.29150390625	2	544.290745	1086.56694	0.36541	0.00019889	0.63911	0.00034786	1.0045	0.00054675	544.2911559236516	28.16	0.25992	28.16	28.07	28.33	0					14	6	3	0	0	0	0.21419	1	9930	9930		59.931	1.7009	1	521440			23851	2738;11485	15504	15564	24188	24188					0.027116361210119067
LEQEQPGVQL	10	Unmodified	_LEQEQPGVQL_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.86810302734375	3	380.868027	1139.58225	0.82645	0.00031477	-0.63767	-0.00024287	0.18878	7.1901E-05	380.8677843820866	18.969	0.19761	18.969	18.896	19.094	0					13	5	4	0	0	0	0.50881	1	5634	5634		56.632	1.9099	1	1633700	+		23852	13085	15505	15565	24189	24189					0.018045029182076178
LEQEQPGVQL	10	Unmodified	_LEQEQPGVQL_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.8679504394531	3	380.868027	1139.58225	0.64011	0.0002438	-0.86954	-0.00033118	-0.22943	-8.7384E-05	380.86775367257474	18.889	0.1965	18.889	18.8	18.997	0					11	4	3	0	0	0	0.62235	1	5753	5753		36.318	9.5215	1	1621000	+		23853	13085	15505	15565	24190	24190					0.018045029182076178
LEQKLATL	8	Unmodified	_LEQKLATL_					0	0	0		nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP	nc|ENSG00000163681|Q14BN4-7|SLMAP	nc|ENSG00000163681|Q14BN4-7|SLMAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2789611816406	2	458.279118	914.543683	0.72197	0.00033087	-0.87704	-0.00040193	-0.15507	-7.1064E-05	458.27864977729024	30.773	0.27528	30.773	30.633	30.909	0					13	6	3	0	0	0	0.24681	1	11529	11529		107.01	0	1	2730300			23854	5592	15506	15566	24191	24191					0.08299242074338053
LEQKLATL	8	Unmodified	_LEQKLATL_					0	0	0		nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP	nc|ENSG00000163681|Q14BN4-7|SLMAP	nc|ENSG00000163681|Q14BN4-7|SLMAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.27899169921875	2	458.279118	914.543683	0.87947	0.00040304	-1.4382	-0.00065909	-0.55872	-0.00025605	458.27842746582775	30.722	0.80822	30.722	30.612	31.42	0					21	16	2	0	0	0	0.24681	1	11416	11416		107.01	0	1	2738700			23855	5592	15506	15566	24192	24192					0.08299242074338053
LEQKVASL	8	Unmodified	_LEQKVASL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.26312255859375	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.768	1	25.768	25.268	26.268	0								0	0	0	1.7419	1	7791	7791		76.774	0	1				23856	3690	15507	15567	24193	24193					0.06458669040239329
LEQKVASLEL	10	Unmodified	_LEQKVASLEL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3273315429688	2	565.326796	1128.63904	-0.34578	-0.00019548	1.2179	0.00068851	0.87212	0.00049304	565.3277396213413	26.308	0.34675	26.308	26.227	26.574	0					23	11	4	0	0	0	0.05785	1	8247	8247		106.68	13.488	1	507570			23857	3690	15508	15568	24194	24194					0.07986550474697651
LEQNLTVM	8	Unmodified	_LEQNLTVM_					0	0	0		ENST00000419462.1_1_8:102381210-102381273:+|nuORF;ENST00000552540.5_2_12:57107337-57108468:-|nuORF	ENST00000419462.1_1_8:102381210-102381273:+|nuORF	ENST00000419462.1_1_8:102381210-102381273:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.24688720703125	2	474.24696	946.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.442	1	31.442	30.942	31.942	0								0	0	0	1.7419	1	10419	10419		60.294	0	1				23858	9384	15509	15569	24195	24195					0.003987189258737089
LEQQELREK	9	Unmodified	_LEQQELREK_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	586.8167114257812	2	586.817127	1171.6197	0.2847	0.00016707	-0.12146	-7.1273E-05	0.16324	9.5793E-05	586.8168832179731	19.219	0.097919	19.219	19.159	19.256	0					8	3	3	0	0	0	0.098791	1	4924	4924		79.713	0	1	231800			23859	2935	15510	15570	24196	24196					0.04075594183791509
LEQQEREKL	9	Unmodified	_LEQQEREKL_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.8173828125	2	586.817127	1171.6197	0.10628	6.2368E-05	0.28945	0.00016985	0.39573	0.00023222	586.8173230867104	19.562	0.23626	19.562	19.469	19.706	0					13	5	4	0	0	0	0.02429	1	5912	5912		114.89	5.4162	1	1551000			23860	1495	15511	15571	24197	24197					0.04075594183814246
LEQQKIQLE	9	Unmodified	_LEQQKIQLE_					0	0	0			REV__nc|ENSG00000104218|Q1MSJ5-2|CSPP1	REV__nc|ENSG00000104218|Q1MSJ5-2|CSPP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8174438476562	2	564.816596	1127.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.786	1	30.786	30.286	31.286	0								0	0	0	0.20646	1	11544	11544		50.034	19.53	1		+		23861	13714	15512	15572	24198	24198					0.059933798148904316
LEQQLGKVL	9	Unmodified	_LEQQLGKVL_					0	0	0			REV__nc|ENSG00000100523|Q8NEL9-3|DDHD1	REV__nc|ENSG00000100523|Q8NEL9-3|DDHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.3109130859375	2	514.310949	1026.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.656	1	42.656	42.156	43.156	0								0	0	0	0.3693	1	17038	17038		19.997	0.6368	1		+		23862	13561	15513	15573	24199	24199					0.09510602511431898
LEQQLKLL	8	Unmodified	_LEQQLKLL_					0	0	0			REV__ENST00000507798.1_3_5:68471281-68471335:+|nuORF	REV__ENST00000507798.1_3_5:68471281-68471335:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.8078308105469	2	492.808042	983.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.219	1	41.219	40.719	41.719	0								0	0	0	1.7419	1	16381	16381		47.657	0	1		+		23863	19846	15514	15574	24200	24200					0.10907503999760593
LEQQQKLIE	9	Unmodified	_LEQQQKLIE_					0	0	0			REV__ENST00000401550.2_1_13:99262776-99262983:-|nuORF	REV__ENST00000401550.2_1_13:99262776-99262983:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.816162109375	2	564.816596	1127.61864	-1.0925	-0.00061705	1.3868	0.00078329	0.29432	0.00016624	564.8174493899014	30.54	0.12548	30.54	30.457	30.583	0					5	3	2	0	0	0	0.048471	1	10421	10421		95.815	0	1	72917	+		23864	15556	15515	15575	24201	24201					0.059933798148904316
LEQTPGVL	8	Unmodified	_LEQTPGVL_					0	0	0		ENST00000305623.12_1_10:5319231-5325679:-|nuORF	ENST00000305623.12_1_10:5319231-5325679:-|nuORF	ENST00000305623.12_1_10:5319231-5325679:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.7427062988281	2	428.742368	855.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.266	1	26.266	25.766	26.766	0								0	0	0	1.7419	1	9380	9380		71.296	5.4925	1				23865	8514	15516	15576	24202	24202					0.03666693631862472
LERALGALA	9	Unmodified	_LERALGALA_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2764587402344	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.001	1	35.001	34.501	35.501	0								0	0	0	0.12457	1	13471	13471		65.803	4.8312	1		+		23866	16502	15517	15577	24203	24203					0.07949777651435852
LERDDNPSL	9	Unmodified	_LERDDNPSL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3;KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant;KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7596435546875	2	529.759278	1057.504	0.1135	6.0129E-05	0.47995	0.00025426	0.59345	0.00031439	529.7595657810836	25.994	0.265	25.994	25.818	26.083	0					10	5	2	0	0	0	0.078509	1	8919	8919		85.161	13.865	1	1189200			23867	2185	15518	15578	24204	24204					-0.022449296670401964
LERFKTEA	8	Unmodified	_LERFKTEA_					0	0	0		nc|ENSG00000022556|Q9NX02-5|NLRP2;NLRP2|p.N1038Tfs*4|2|0.38|ENSG00000022556|chr19:55000816-55000816|A/-|frameshift_variant;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF	nc|ENSG00000022556|Q9NX02-5|NLRP2	nc|ENSG00000022556|Q9NX02-5|NLRP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.27154541015625	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.105	1	22.105	21.605	22.605	0								0	0	0	1.7419	1	7128	7128		66.429	13.078	1				23868	1111	15519	15579	24205	24205					0.03253169926199462
LERGGFSPQ	9	Unmodified	_LERGGFSPQ_					0	0	0		NLGN4X|p.T83Lfs*53|2|0.09|ENSG00000146938|chrX:6151221-6151221|G/-|frameshift_variant	NLGN4X|p.T83Lfs*53|2|0.09|ENSG00000146938|chrX:6151221-6151221|G/-|frameshift_variant	NLGN4X|p.T83Lfs*53|2|0.09|ENSG00000146938|chrX:6151221-6151221|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.75830078125	2	495.753798	989.493044	-0.37833	-0.00018756	0.82832	0.00041064	0.44999	0.00022308	495.7543104367244	25.169	0.89169	25.169	24.852	25.744	0					58	21	4	0	0	0	0.35021	1	8725	8725		45.972	0	1	2626300			23869	11857	15520	15580	24206	24206					-0.0021228725065611798
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2873229980469	2	487.287474	972.560395	-1.2448	-0.0006066	1.2278	0.00059828	-0.017069	-8.3176E-06	487.2879111851459	21.896	0.26441	21.896	21.814	22.078	0					21	8	4	0	0	0	0.24999	1	6365	6365		101.25	10.883	1	1383700			23870	1132	15521	15581	24207	24207					0.07301742960294177
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.287353515625	2	487.287474	972.560395	0.63145	0.0003077	-1.2632	-0.00061555	-0.63176	-0.00030785	487.28701956891086	22.062	0.46172	22.062	21.955	22.417	0					16	9	4	0	0	0	0.241	1	7421	7421		115.49	5.3742	1	8598400			23871	1132	15521	15581	24208	24208					0.07301742960294177
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.28717041015625	2	487.287474	972.560395	-0.23052	-0.00011233	-0.24075	-0.00011732	-0.47128	-0.00022965	487.28735562127525	21.948	0.31655	21.948	21.854	22.17	0					13	7	2	0	0	0	0.241	1	6463	6463		115.49	5.3742	1	918230			23872	1132	15521	15581	24209	24209					0.07301742960294177
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2870788574219	2	487.287474	972.560395	-2.9117	-0.0014188	2.761	0.0013454	-0.15067	-7.3421E-05	487.28860911087907	21.937	0.27456	21.937	21.837	22.111	0					16	6	4	0	0	0	0.241	1	6455	6455		115.49	10.747	1	893580			23873	1132	15521	15581	24210	24210					0.07301742960294177
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2872314453125	2	487.287474	972.560395	0.81059	0.00039499	-1.3078	-0.0006373	-0.49726	-0.00024231	487.2868517562345	22.08	0.46763	22.08	21.97	22.438	0					22	9	4	0	0	0	0.24844	1	7298	7298		104.06	10.861	1	6714600			23874	1132	15521	15581	24211	24211					0.07301742960294177
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.28729248046875	2	487.287474	972.560395	2.5552	0.0012451	-2.7223	-0.0013265	-0.16706	-8.1408E-05	487.28603642027144	22.113	0.21927	22.113	22.004	22.223	0					15	4	5	0	0	0	0.24844	1	7290	7290		104.06	10.861	1	7703300			23875	1132	15521	15581	24212	24212					0.07301742960294177
LERMGANSL	9	Unmodified	_LERMGANSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7553405761719	2	495.755484	989.496415	-0.37528	-0.00018605	-2.0605	-0.0010215	-2.4357	-0.0012075	495.755042819378	29.088	0.36706	29.088	28.957	29.324	0					25	9	4	0	0	0	0.029571	1	10339	10339		109.44	21.685	1	1160200			23876	1937	15522	15582	24213	24213					0.0012463953169117303
LERMGANSL	9	Unmodified	_LERMGANSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.75518798828125	2	495.755484	989.496415	-1.2148	-0.00060223	-1.4087	-0.00069839	-2.6235	-0.0013006	495.755234037809	28.837	0.19761	28.837	28.769	28.966	0					23	7	4	0	0	0	0.021015	1	9334	9334		120.31	27.11	1	399960			23877	1937	15522	15582	24214	24214					0.0012463953169117303
LERMGANSL	9	Unmodified	_LERMGANSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7552795410156	2	495.755484	989.496415	-2.4006	-0.0011901	-0.17357	-8.605E-05	-2.5742	-0.0012762	495.7557778977141	28.878	0.2732	28.878	28.78	29.054	0					22	6	4	0	0	0	0.029571	1	9629	9629		109.44	32.665	1	510630			23878	1937	15522	15582	24215	24215					0.0012463953169117303
LERPGGNEIT	10	Unmodified	_LERPGGNEIT_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7850341796875	2	543.28292	1084.55129	0.33061	0.00017962	0.11754	6.3858E-05	0.44815	0.00024347	543.7843826172902	24.985	0.23083	24.985	24.937	25.168	0					10	7	2	0	0	0	0.69544	1	7731	7731		22.58	0.89391	1	60654			23879	6307	15523	15583	24216	24216					0.012393496039521779
LERQIEKL	8	Unmodified	_LERQIEKL_					0	0	0		BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.8089599609375	2	514.808574	1027.60259	0.13886	7.1488E-05	0.42881	0.00022076	0.56768	0.00029224	514.8088520223287	26.505	0.16974	26.505	26.4	26.57	0					8	3	3	0	0	0	0.67836	1	9388	9388		26.693	0	1	235030			23880	278	15524	15584	24217	24217					0.0898971836866167
LERQIGVI	8	Unmodified	_LERQIGVI_					0	0	0		NCOR2|p.A1124V|1|0.18|ENSG00000196498|chr12:124355442-124355442|G/A|missense_variant	NCOR2|p.A1124V|1|0.18|ENSG00000196498|chr12:124355442-124355442|G/A|missense_variant	NCOR2|p.A1124V|1|0.18|ENSG00000196498|chr12:124355442-124355442|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2844543457031	2	464.284734	926.554916	-0.69527	-0.0003228	0.34203	0.0001588	-0.35324	-0.000164	464.2849692332695	42.008	0.20995	42.008	41.955	42.165	0					13	10	2	0	0	0	0.66095	1	15937	15937		39.253	2.0937	1	110700			23881	11846	15525	15585	24218	24218					0.0887006416847953
LERTGYTL	8	Unmodified	_LERTGYTL_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.758056640625	2	476.758549	951.502546	-0.35888	-0.0001711	-0.89066	-0.00042463	-1.2495	-0.00059573	476.75803503149604	30.441	0.25616	30.441	30.354	30.61	0					11	6	3	0	0	0	0.50061	1	10985	10985		60.118	0	1	390040			23882	3449	15526	15586	24219	24219					0.024854810348642786
LERVAIDAL	9	Unmodified	_LERVAIDAL_					0	0	0		ENST00000559530.1_1_15:32058089-32058740:-|nuORF;ENST00000488146.5_1_1:68942617-68947320:-|nuORF;nc|ENSG00000024526|Q5TB30-2|DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2957458496094	2	500.295299	998.576045	-1.012	-0.00050629	0.22773	0.00011393	-0.78425	-0.00039236	500.29552039378314	36.361	0.10505	36.361	36.296	36.401	0					8	5	2	0	0	0	0.44593	1	12327	12327		37.812	0.65241	1	30265			23883	10680	15527	15587	24220	24220					0.07670029477310436
LESAAARRA	9	Unmodified	_LESAAARRA_					0	0	0		ENST00000484662.1_1_1:78445136-78445292:+|nuORF	ENST00000484662.1_1_1:78445136-78445292:+|nuORF	ENST00000484662.1_1_1:78445136-78445292:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7685241699219	2	472.76724	943.519927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.127	1	35.127	34.627	35.627	0								0	0	0	0.082437	1	13590	13590		76.774	3.8949	1				23884	9999	15528	15588	24221	24221					0.045908213605116543
LESDNNTAL	9	Unmodified	_LESDNNTAL_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7327880859375	2	488.732729	975.450904	-0.40814	-0.00019947	0.64389	0.00031469	0.23576	0.00011522	488.73307797707486	29.307	0.24961	29.307	29.196	29.445	0					15	6	3	0	0	0	0.25761	1	10449	10449		54.722	10.345	1	263930			23885	3665	15529	15589	24222	24222					-0.03780307449721931
LESDPLALK	9	Unmodified	_LESDPLALK_					0	0	0		REXO1|p.L1148P|1|0.22|ENSG00000079313|chr19:1816444-1816444|A/G|missense_variant	REXO1|p.L1148P|1|0.22|ENSG00000079313|chr19:1816444-1816444|A/G|missense_variant	REXO1|p.L1148P|1|0.22|ENSG00000079313|chr19:1816444-1816444|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.281982421875	2	493.281857	984.549162	0.86525	0.00042681	-0.77868	-0.00038411	0.086577	4.2707E-05	493.28142007926135	34.385	0.31157	34.385	34.277	34.589	0					10	6	2	0	0	0	0.063823	1	13184	13184		90.37	13.596	1	2400000			23886	22339	15530	15590	24223	24223					0.05626920866143337
LESGKIAV	8	Unmodified	_LESGKIAV_					0	0	0		ENSG00000278023|ENST00000620284|RDM1;nc|ENSG00000278023|Q8NG50-2|RDM1	ENSG00000278023|ENST00000620284|RDM1	ENSG00000278023|ENST00000620284|RDM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	408.7445983886719	2	408.744911	815.475269	-0.093791	-3.8337E-05	-0.41827	-0.00017097	-0.51206	-0.0002093	408.74476185940995	23.752	0.14619	23.752	23.713	23.86	0					6	3	2	0	0	0	0.49216	1	7311	7311		60.972	0	1	118840			23887	8121	15531	15591	24224	24224					0.060149974944692985
LESIFNVV	8	Unmodified	_LESIFNVV_					0	0	0			REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7593994140625	2	460.758018	919.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.944	1	33.944	33.444	34.444	0								0	0	0	1.7419	1	12601	12601		73.975	7.5455	1		+		23888	21905	15532	15592	24225	24225					0.03851266665958519
LESIQLEL	8	Unmodified	_LESIQLEL_					0	0	0		ENSG00000178021|ENST00000317802|TSPYL6	ENSG00000178021|ENST00000317802|TSPYL6	ENSG00000178021|ENST00000317802|TSPYL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7685546875	2	472.768583	943.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.886	1	34.886	34.386	35.386	0								0	0	0	1.7419	1	11783	11783		62.107	3.3255	1				23889	6695	15533	15593	24226	24226					0.04859231974796785
LESKGLTL	8	Unmodified	_LESKGLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.75738525390625	2	430.758018	859.501483	0.17074	7.3547E-05	-0.64668	-0.00027856	-0.47594	-0.00020501	430.7577239528149	32.759	0.3904	32.759	32.646	33.037	0					32	15	3	0	0	0	0.29286	1	10580	10580		84.916	0	1	974810			23890	1085	15534	15594	24227	24227					0.06611266665970561
LESKGLTL	8	Unmodified	_LESKGLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.75787353515625	2	430.758018	859.501483	-0.49694	-0.00021406	-0.028674	-1.2352E-05	-0.52561	-0.00022641	430.75798617643954	33.027	0.31883	33.027	32.885	33.203	0					20	7	4	0	0	0	0.26795	1	12570	12570		93.143	8.2277	1	1507700			23891	1085	15534	15594	24228	24228					0.06611266665970561
LESKGLTL	8	Unmodified	_LESKGLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7576904296875	2	430.758018	859.501483	0.97254	0.00041893	-1.1898	-0.00051252	-0.21728	-9.3593E-05	430.75748485437424	33.009	0.56794	33.009	32.834	33.402	0					28	13	3	0	0	0	0.22389	1	12583	12583		127.46	19.374	1	2787400			23892	1085	15534	15594	24229	24229					0.06611266665970561
LESKGLTL	8	Unmodified	_LESKGLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7579345703125	2	430.758018	859.501483	0.19374	8.3453E-05	-0.73429	-0.0003163	-0.54056	-0.00023285	430.7577061840552	32.781	0.32069	32.781	32.669	32.99	0					18	8	3	0	0	0	0.37144	1	11423	11423		74.255	0	1	659500			23893	1085	15534	15594	24230	24230					0.06611266665970561
LESKGLTL	8	Unmodified	_LESKGLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.75775146484375	2	430.758018	859.501483	-0.34997	-0.00015075	0.11249	4.8455E-05	-0.23748	-0.0001023	430.75802226952027	32.768	0.35297	32.768	32.659	33.012	0					20	9	3	0	0	0	0.28444	1	11419	11419		87.696	10.922	1	681600			23894	1085	15534	15594	24231	24231					0.06611266665970561
LESKGLTL	8	Unmodified	_LESKGLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.75787353515625	2	430.758018	859.501483	-0.45785	-0.00019722	-0.12924	-5.5673E-05	-0.5871	-0.0002529	430.75799586710104	32.98	0.39115	32.98	32.875	33.266	0					20	8	3	0	0	0	0.241	1	12471	12471		115.49	19.304	1	2897900			23895	1085	15534	15594	24232	24232					0.06611266665970561
LESKTYHAL	9	Unmodified	_LESKTYHAL_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;PSMD11|p.P204Lfs*48|2|0.42|ENSG00000108671|chr17:32469156-32469156|C/-|frameshift_variant	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2866821289062	2	531.284931	1060.55531	1.9709	0.0010471	0.56123	0.00029817	2.5322	0.0013453	531.2853745377238	22.785	0.1362	22.785	22.698	22.834	0					5	3	2	0	0	0	0.33044	1	7462	7462		47.657	6.8792	1	50397			23896	2544	15535	15595	24233	24233					0.027454390976799914
LESKTYHAL	9	Unmodified	_LESKTYHAL_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;PSMD11|p.P204Lfs*48|2|0.42|ENSG00000108671|chr17:32469156-32469156|C/-|frameshift_variant	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2858276367188	2	531.284931	1060.55531	0.98343	0.00052248	0.23914	0.00012705	1.2226	0.00064953	531.2851230032147	22.669	0.2142	22.669	22.614	22.828	0					6	4	2	0	0	0	0.10915	1	7717	7717		77.318	15.21	1	264320			23897	2544	15535	15595	24234	24234					0.027454390976799914
LESLCHLCLA	10	Unmodified	_LESLCHLCLA_					0	0	0		nc|ENSG00000122783|Q9BWK5-2|CYREN	nc|ENSG00000122783|Q9BWK5-2|CYREN	nc|ENSG00000122783|Q9BWK5-2|CYREN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.8523254394531	3	367.852555	1100.53584	0.26835	9.8714E-05	-1.4129	-0.00051975	-1.1446	-0.00042104	367.8521450684299	21.584	0.21849	21.584	21.424	21.642	0					8	4	3	0	0	0	0.68774	1	7194	7194		23.523	2.6855	1	187250			23898	11505	15536	15596	24235	24235					-0.010409765091026202
LESLHGPWK	9	Unmodified	_LESLHGPWK_					0	0	0		ENST00000389120.7_1_9:104296173-104297722:+|nuORF	ENST00000389120.7_1_9:104296173-104297722:+|nuORF	ENST00000389120.7_1_9:104296173-104297722:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7861938476562	2	533.787641	1065.56073	-0.46995	-0.00025085	-2.624	-0.0014007	-3.094	-0.0016515	533.786394442713	20.061	0.089151	20.061	20.004	20.093	0					6	3	2	0	0	0	0.03984	1	5544	5544		99.375	31.881	1	164470			23899	9133	15537	15597	24236	24236					0.03057162680147485
LESTVDKKC	9	Unmodified	_LESTVDKKC_					0	0	0		RTN4|p.K419T|1|0.26|ENSG00000115310|chr2:55026843-55026843|T/G|missense_variant	RTN4|p.K419T|1|0.26|ENSG00000115310|chr2:55026843-55026843|T/G|missense_variant	RTN4|p.K419T|1|0.26|ENSG00000115310|chr2:55026843-55026843|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7635192871094	2	511.762975	1021.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.338	1	33.338	32.838	33.838	0								0	0	0	0.28164	1	12319	12319		38.806	0.99462	1				23900	22364	15538	15598	24237	24237					0.001500866090168529
LESVAGKRN	9	Unmodified	_LESVAGKRN_					0	0	0			REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.1854553222656	3	325.185691	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.742	1	39.742	39.242	40.242	0								0	0	0	0.35899	1	12892	12892		17.468	0.75062	1		+		23901	16596	15539	15599	24238	24238					0.047876881577167296
LESYLPKIQ	9	Unmodified	_LESYLPKIQ_					0	0	0		nc|ENSG00000003137|Q9NR63-3|CYP26B1;nc|ENSG00000003137|Q9NR63-2|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.8111572265625	2	545.810782	1089.60701	0.50285	0.00027446	0.22996	0.00012552	0.73281	0.00039998	545.8106355789349	31.044	0.21665	31.044	30.95	31.167	0					16	8	3	0	0	0	0.18416	1	10243	10243		56.721	0	1	216340			23902	11409	15540	15600	24239	24239					0.0657918279155183
LETAAKII	8	Unmodified	_LETAAKII_					0	0	0			REV__nc|ENSG00000147231|Q6NSI4-3|RADX	REV__nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7686462402344	2	429.768386	857.522219	-0.44174	-0.00018985	-0.21129	-9.0805E-05	-0.65303	-0.00028065	429.7684897846516	35.187	0.16713	35.187	35.129	35.296	0					5	3	2	0	0	0	0.68432	1	13576	13576		35.618	0	1	54125	+		23903	15340	15541	15601	24240	24240					0.0877585704562307
LETEYKVKIS	10	Unmodified	_LETEYKVKIS_					0	0	0		PYGL|p.N559S|1|0.43|ENSG00000100504|chr14:50912248-50912248|T/C|missense_variant	PYGL|p.N559S|1|0.43|ENSG00000100504|chr14:50912248-50912248|T/C|missense_variant	PYGL|p.N559S|1|0.43|ENSG00000100504|chr14:50912248-50912248|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.3375244140625	2	605.339904	1208.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.652	1	35.652	35.152	36.152	0								0	0	0	0.40063	1	13831	13831		30.318	4.7437	1				23904	11992	15542	15602	24241	24241					0.06926819646196236
LETEYQLKK	9	Unmodified	_LETEYQLKK_					0	0	0		tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.3187866210938	2	576.318971	1150.62339	0.94117	0.00054241	0.44133	0.00025435	1.3825	0.00079676	576.318855552275	21.996	0.080894	21.996	21.942	22.023	0					4	2	2	0	0	0	0.30951	1	6153	6153		49.442	1.7842	1	44596			23905	22654	15543	15603	24242	24242					0.05410263957674033
LETGKVTL	8	Unmodified	_LETGKVTL_					0	0	0			REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.7577209472656	2	430.758018	859.501483	-0.85129	-0.0003667	0.39067	0.00016828	-0.46062	-0.00019841	430.7581778866939	32.8	0.33294	32.8	32.657	32.989	0					23	12	3	0	0	0	0.32815	1	10949	10949		79.451	0	1	488310	+		23906	12399	15544	15604	24243	24243					0.06611266665970561
LETIIKSL	8	Unmodified	_LETIIKSL_					0	0	0		nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7879638671875	2	458.789318	915.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.633	1	40.633	40.133	41.133	0								0	0	0	1.7419	1	16148	16148		49.442	5.3247	1				23907	3509	15545	15605	24244	24244					0.10292412734145273
LETITLIQ	8	Unmodified	_LETITLIQ_					0	0	0		ENSG00000091137|ENST00000644269|SLC26A4;nc|ENSG00000091137|O43511-2|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.77716064453125	2	465.778951	929.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.209	1	46.209	45.709	46.709	0								0	0	0	1.7419	1	18495	18495		31.955	1.4512	1				23908	1853	15546	15606	24245	24245					0.07575822354476713
LETIYQLT	8	Unmodified	_LETIYQLT_					0	0	0			REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.76806640625	2	490.768583	979.522613	0.78582	0.00038566	-1.2392	-0.00060815	-0.45336	-0.0002225	490.7676897052789	38.585	0.31276	38.585	38.48	38.792	0					8	6	2	0	0	0	0.43813	1	15198	15198		66.429	10.925	1	87311	+		23909	19562	15547	15607	24246	24246					0.032032319747941074
LETKWILLQ	9	Unmodified	_LETKWILLQ_					0	0	0		ENST00000449849.2_1_2:203789500-203789902:+|nuORF	ENST00000449849.2_1_2:203789500-203789902:+|nuORF	ENST00000449849.2_1_2:203789500-203789902:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.340576171875	2	572.342249	1142.66995	-1.4354	-0.00082155	-1.399	-0.00080073	-2.8345	-0.0016223	572.3415476178867	30.056	0.18871	30.056	29.956	30.145	0					13	4	4	0	0	0	0.048471	1	10176	10176		95.815	0	1	908810			23910	9641	15548	15608	24247	24247					0.10431748579617306
LETLGLAQSL	10	Unmodified	_LETLGLAQSL_					0	0	0		ENST00000538502.5_2_1:109883387-109884641:-|nuORF	ENST00000538502.5_2_1:109883387-109884641:-|nuORF	ENST00000538502.5_2_1:109883387-109884641:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8007202148438	2	522.800414	1043.58628	3.4064	0.0017809	-1.6176	-0.00084569	1.7888	0.00093519	522.7992669925136	42.893	0.2206	42.893	42.762	42.983	0					12	7	2	0	0	0	0.4758	1	17137	17137		47.96	1.9873	1	120930			23911	10511	15549	15609	24248	24248					0.06622592411895312
LETLGQEKL	9	Unmodified	_LETLGQEKL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;CON__H-INV:HIT000292931;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7929077148438	2	515.792589	1029.57063	0.22867	0.00011795	0.14999	7.7361E-05	0.37866	0.00019531	515.7927457558651	33.458	0.37228	33.458	33.366	33.738	0					26	13	3	0	0	0	0.020674	1	10872	10872		120.87	13.861	1	800300		+	23912	11643;10716;9643	15550	15610	24249	24249					0.057023058948516336
LETLGQEKL	9	Unmodified	_LETLGQEKL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;CON__H-INV:HIT000292931;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7930908203125	2	515.792589	1029.57063	0.033021	1.7032E-05	0.88445	0.00045619	0.91747	0.00047322	515.7930107480416	33.695	0.58084	33.695	33.486	34.067	0					35	15	3	0	0	0	0.011389	1	12469	12469		138.06	15.886	1	3170900		+	23913	11643;10716;9643	15550	15610	24250	24250					0.057023058948516336
LETLGQEKL	9	Unmodified	_LETLGQEKL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;CON__H-INV:HIT000292931;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7927856445312	2	515.792589	1029.57063	-0.075314	-3.8847E-05	0.22664	0.0001169	0.15133	7.8053E-05	515.7926950853117	33.515	0.34394	33.515	33.411	33.755	0					30	13	4	0	0	0	0.011389	1	11241	11241		138.06	33.316	1	1173900		+	23914	11643;10716;9643	15550	15610	24251	24251					0.057023058948516336
LETLLRNI	8	Unmodified	_LETLLRNI_					0	0	0		nc|ENSG00000112208|O95816-2|BAG2;ENSG00000112208|ENST00000370693|BAG2	nc|ENSG00000112208|O95816-2|BAG2	nc|ENSG00000112208|O95816-2|BAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2978820800781	2	486.297842	970.581131	0.64424	0.00031329	-1.0271	-0.00049949	-0.38287	-0.00018619	486.29730415716176	41.713	0.22046	41.713	41.607	41.828	0					13	9	2	0	0	0	0.58597	1	16381	16381		51.335	0	1	370130			23915	2721	15551	15611	24252	24252					0.09466333339958055
LETLSRIV	8	Unmodified	_LETLSRIV_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;sp|F5H8Q3|UL148_HCMVMMembraneproteinUL148OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL148PE=3SV=1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7843017578125	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.169	1	41.169	40.669	41.669	0								0	0	0	1.7419	1	14539	14539		42.474	0	1				23916	1753	15552	15612	24253	24253					0.08698644448611503
LETRGKAL	8	Unmodified	_LETRGKAL_					0	0	0		ENST00000571816.5_2_17:4843437-4843473:+|nuORF	ENST00000571816.5_2_17:4843437-4843473:+|nuORF	ENST00000571816.5_2_17:4843437-4843473:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.264404296875	2	444.269084	886.523616	-1.158	-0.00051445	-1.4613	-0.00064922	-2.6193	-0.0011637	444.2681930128319	29.229	0.19979	29.229	29.136	29.335	0					11	8	2	0	0	0	0.30437	1	9478	9478		82.305	2.854	1	91119			23917	10807	15553	15613	24254	24254					0.07581491134385487
LETSNARAVI	10	Unmodified	_LETSNARAVI_					0	0	0		nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;GRM4|p.A697Pfs*126|1|0.38|ENSG00000124493|chr6:34036022-34036022|G/-|frameshift_variant;ENSG00000124493|ENST00000538487|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.30126953125	2	537.301113	1072.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.615	1	32.615	32.115	33.115	0								0	0	0	0.3185	1	11359	11359		47.96	5.0953	1				23918	3378	15554	15614	24255	24255					0.05428226500657729
LETSTGHSL	9	Unmodified	_LETSTGHSL_					0	0	0		nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.73760986328125	2	472.737814	943.461075	-0.55246	-0.00026117	2.6983	0.0012756	2.1458	0.0010144	472.73821858250994	23.652	0.31706	23.652	23.515	23.832	0					15	7	4	0	0	0	0.12239	1	7867	7867		74.255	4.6274	1	462580			23919	11508	15555	15615	24256	24256					-0.01291699724481532
LEVEGVEGSMW	11	Unmodified	_LEVEGVEGSMW_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	618.288330078125	2	618.284271	1234.55399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.132	1	42.132	41.632	42.632	0								0	0	0	0.45674	1	15978	15978		20.947	1.8434	1				23920	1068	15556	15616	24257	24257					-0.0539056305340182
LEVEKIGVGE	10	Unmodified	_LEVEKIGVGE_					0	0	0		WEE2|p.K506*|1|0.1|ENSG00000214102|chr7:141727426-141727427|-/TG|frameshift_variant;ENSG00000214102|ENST00000397541|WEE2	WEE2|p.K506*|1|0.1|ENSG00000214102|chr7:141727426-141727427|-/TG|frameshift_variant	WEE2|p.K506*|1|0.1|ENSG00000214102|chr7:141727426-141727427|-/TG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7985229492188	2	536.797872	1071.58119	1.0474	0.00056224	-0.62911	-0.00033771	0.41829	0.00022453	536.7977227666958	33.738	0.18256	33.738	33.679	33.862	0					7	5	2	0	0	0	0.080628	1	11870	11870		87.696	1.8346	1	194250			23921	7807	15557	15617	24258	24258					0.04826288549293167
LEVELDQAR	9	Unmodified	_LEVELDQAR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7857666015625	2	536.785296	1071.55604	1.358	0.00072897	-0.77141	-0.00041408	0.58662	0.00031489	536.784925303814	25.646	0.25854	25.646	25.497	25.756	0					15	8	3	0	0	0	0.098791	1	7759	7759		79.713	15.505	1	126790			23922	4171	15558	15618	24259	24259					0.023122337467157195
LEVELDQAR	9	Unmodified	_LEVELDQAR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7861328125	2	536.785296	1071.55604	-0.4178	-0.00022427	1.3955	0.00074908	0.97769	0.00052481	536.7864583829678	25.698	0.27206	25.698	25.499	25.771	0					18	8	3	0	0	0	0.07136	1	8031	8031		87.696	14.817	1	345610			23923	4171	15558	15618	24260	24260					0.023122337467157195
LEVGDNHL	8	Unmodified	_LEVGDNHL_					0	0	0		LINGO4|p.L527Sfs*3|1|0.23|ENSG00000213171|chr1:151801126-151801127|-/A|frameshift_variant;LINGO4|p.L527Wfs*21|1|0.34|ENSG00000213171|chr1:151801127-151801127|A/-|frameshift_variant;ENSG00000213171|ENST00000368820|LINGO4	LINGO4|p.L527Sfs*3|1|0.23|ENSG00000213171|chr1:151801126-151801127|-/A|frameshift_variant	LINGO4|p.L527Sfs*3|1|0.23|ENSG00000213171|chr1:151801126-151801127|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.7271728515625	2	448.727249	895.439946	-1.178	-0.00052862	0.95887	0.00043027	-0.21917	-9.8346E-05	448.72760256422083	27.595	0.15937	27.595	27.523	27.682	0					9	5	2	0	0	0	0.7126	1	8802	8802		31.955	1.6371	1	109750			23924	7784	15559	15619	24261	24261					-0.011956650333331709
LEVGSGGRLSP	11	Unmodified	_LEVGSGGRLSP_					0	0	0			REV__ENST00000272117.7_1_1:226822089-226822143:-|nuORF	REV__ENST00000272117.7_1_1:226822089-226822143:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.2932739257812	2	536.293288	1070.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.243	1	40.243	39.743	40.743	0								0	0	0	0.29313	1	14307	14307		53.089	3.6474	1		+		23925	18103	15560	15620	24262	24262					0.03955939983643475
LEVHVDPVG	9	Unmodified	_LEVHVDPVG_					0	0	0		ENST00000598660.1_1_19:18723732-18729158:+|nuORF;ENSG00000105696|ENST00000262817|TMEM59L	ENST00000598660.1_1_19:18723732-18729158:+|nuORF	ENST00000598660.1_1_19:18723732-18729158:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.75830078125	2	482.758549	963.502546	-0.10124	-4.8877E-05	-0.46783	-0.00022585	-0.56907	-0.00027472	482.7584107541738	32.98	0.35439	32.98	32.77	33.124	0					16	8	2	0	0	0	0.41354	1	12592	12592		40.573	1.7665	1	506610			23926	2387	15561	15621	24263	24263					0.019334810348709652
LEVKGTQL	8	Unmodified	_LEVKGTQL_					0	0	0		SLC44A3|p.V304Cfs*11|1|0.06|ENSG00000143036|chr1:94845296-94845297|-/T|frameshift_variant;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	SLC44A3|p.V304Cfs*11|1|0.06|ENSG00000143036|chr1:94845296-94845297|-/T|frameshift_variant	SLC44A3|p.V304Cfs*11|1|0.06|ENSG00000143036|chr1:94845296-94845297|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2635498046875	2	444.263468	886.512382	-0.067144	-2.983E-05	0.53117	0.00023598	0.46403	0.00020615	444.26392644919184	30.068	0.13392	30.068	30.022	30.156	0					5	3	2	0	0	0	0.44767	1	10813	10813		65.465	1.2581	1	63597			23927	4522	15562	15622	24264	24264					0.06458669040262066
LEVKGTQL	8	Unmodified	_LEVKGTQL_					0	0	0		SLC44A3|p.V304Cfs*11|1|0.06|ENSG00000143036|chr1:94845296-94845297|-/T|frameshift_variant;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	SLC44A3|p.V304Cfs*11|1|0.06|ENSG00000143036|chr1:94845296-94845297|-/T|frameshift_variant	SLC44A3|p.V304Cfs*11|1|0.06|ENSG00000143036|chr1:94845296-94845297|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2634582519531	2	444.263468	886.512382	-0.2187	-9.7162E-05	-0.20236	-8.9902E-05	-0.42107	-0.00018706	444.26352366213354	30.067	0.1991	30.067	29.964	30.163	0					6	4	2	0	0	0	0.32597	1	11210	11210		79.713	2.9384	1	258980			23928	4522	15562	15622	24265	24265					0.06458669040262066
LEVKLKEN	8	Unmodified	_LEVKLKEN_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7900695800781	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.599	1	28.599	28.099	29.099	0								0	0	0	1.7419	1	9513	9513		66.429	7.6473	1		+		23929	15611	15563	15623	24266	24266					0.07822627103053037
LEVKTESL	8	Unmodified	_LEVKTESL_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7607116699219	2	459.760758	917.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.941	1	30.941	30.441	31.441	0								0	0	0	1.7419	1	11210	11210		90.37	13.596	1				23930	7794	15564	15624	24267	24267					0.04490945457757789
LEVKTESL	8	Unmodified	_LEVKTESL_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7603759765625	2	459.760758	917.506963	0.72232	0.00033209	-1.1624	-0.00053443	-0.4401	-0.00020234	459.7600445210089	30.905	0.18944	30.905	30.854	31.044	0					9	4	3	0	0	0	0.41	1	11608	11608		69.628	7.5202	1	554900			23931	7794	15564	15624	24268	24268					0.04490945457757789
LEVKTESL	8	Unmodified	_LEVKTESL_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7605285644531	2	459.760758	917.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.9	1	30.9	30.4	31.4	0								0	0	0	1.7419	1	11491	11491		95.815	21.56	1				23932	7794	15564	15624	24269	24269					0.04490945457757789
LEVLKDVL	8	Unmodified	_LEVLKDVL_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.78900146484375	2	464.789318	927.564084	0.70959	0.00032981	-1.9013	-0.00088372	-1.1917	-0.00055391	464.7885157254741	43.544	0.1444	43.544	43.492	43.636	0					6	4	2	0	0	0	0.35045	1	17426	17426		76.774	10.345	1	63338	+		23933	21815	15565	15625	24270	24270					0.09740412734140591
LEVLPPTADE	10	Unmodified	_LEVLPPTADE_					0	0	0			REV__ENST00000581862.5_1_18:70829151-70867947:-|nuORF	REV__ENST00000581862.5_1_18:70829151-70867947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.28271484375	2	542.282054	1082.54956	1.1241	0.0006096	0.66165	0.0003588	1.7858	0.0009684	542.2823173422345	35.916	0.32022	35.916	35.798	36.118	0					33	15	3	0	0	0	0.44469	1	11758	11758		51.335	5.3835	1	178470	+		23934	20459	15566	15626	24271	24271					0.011582957953123696
LEVLVKTL	8	Unmodified	_LEVLVKTL_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.8000183105469	2	457.799686	913.584819	0.77684	0.00035563	-1.0954	-0.00050147	-0.31856	-0.00014584	457.7992054742909	41.133	0.076355	41.133	41.075	41.152	0					6	3	2	0	0	0	0.64144	1	15643	15643		42.396	1.8235	1	36396			23935	7703;11722	15567	15627	24272	24272					0.12457003113809151
LEVLVKTL	8	Unmodified	_LEVLVKTL_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.799560546875	2	457.799686	913.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.953	1	40.953	40.453	41.453	0								0	0	0	1.7419	1	13649	13649		47.657	12.039	1				23936	7703;11722	15567	15627	24273	24273					0.12457003113809151
LEVLVKTL	8	Unmodified	_LEVLVKTL_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.8000793457031	2	457.799686	913.584819	0.72183	0.00033045	-1.1404	-0.00052207	-0.41856	-0.00019162	457.7991441797287	41.081	0.1574	41.081	41.014	41.172	0					12	6	2	0	0	0	0.42778	1	16149	16149		67.494	18.052	1	226940			23937	7703;11722	15567	15627	24274	24274					0.12457003113809151
LEVLVKTL	8	Unmodified	_LEVLVKTL_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7989807128906	2	457.799686	913.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.821	1	40.821	40.321	41.321	0								0	0	0	1.7419	1	14475	14475		35.618	5.1146	1				23938	7703;11722	15567	15627	24275	24275					0.12457003113809151
LEVQGPVSL	9	Unmodified	_LEVQGPVSL_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2687072753906	2	471.26875	940.522947	-0.55051	-0.00025944	0.025771	1.2145E-05	-0.52474	-0.00024729	471.26875055845323	29.805	0.16409	29.805	29.698	29.862	0					6	3	2	0	0	0	0.15163	1	10950	10950		67.494	5.3863	1	169510			23939	1262	15568	15628	24276	24276					0.0503065169467618
LEVRLSPC	8	Unmodified	_LEVRLSPC_					0	0	0			REV__ENST00000372070.7_1_1:46016687-46016741:+|nuORF	REV__ENST00000372070.7_1_1:46016687-46016741:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7483215332031	2	458.74967	915.484787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.516	1	40.516	40.016	41.016	0								0	0	0	1.7419	1	14386	14386		47.916	7.343	1		+		23940	18662	15569	15629	24277	24277					0.023664425083666174
LEVSLTREIT	10	Unmodified	_LEVSLTREIT_					0	0	0			REV__nc|ENSG00000109819|Q9UBK2-5|PPARGC1A	REV__nc|ENSG00000109819|Q9UBK2-5|PPARGC1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.8304443359375	2	580.829703	1159.64485	-0.36208	-0.0002103	0.75055	0.00043594	0.38847	0.00022564	580.8301727868607	33.335	0.14146	33.335	33.246	33.388	0					5	3	2	0	0	0	0.2538	1	12744	12744		72.879	11.115	1	158650	+		23941	13916	15570	15630	24278	24278					0.07141648986385007
LEVSQRVL	8	Unmodified	_LEVSQRVL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2820129394531	2	472.282192	942.549831	-0.73975	-0.00034937	0.57229	0.00027028	-0.16746	-7.9089E-05	472.28259649283945	24.932	0.16436	24.932	24.826	24.991	0					5	3	2	0	0	0	0.5676	1	8797	8797		53.351	2.016	1	133230	+		23942	13072	15571	15631	24279	24279					0.0762576030585933
LEVTVASIS	9	Unmodified	_LEVTVASIS_					0	0	0			REV__nc|ENSG00000110442|Q9P000-2|COMMD9	REV__nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7605285644531	2	459.760758	917.506963	-0.0026214	-1.2052E-06	-0.78116	-0.00035915	-0.78378	-0.00036035	459.76031652645605	30.692	0.184	30.692	30.621	30.805	0					6	5	2	0	0	0	0.39215	1	10514	10514		42.396	0	1	103470	+		23943	13936	15572	15632	24280	24280					0.04490945457757789
LEVVVRLPD	9	Unmodified	_LEVVVRLPD_					0	0	0		ARHGAP29|p.D502V|1|0.41|ENSG00000137962|chr1:94189287-94189287|T/A|missense_variant	ARHGAP29|p.D502V|1|0.41|ENSG00000137962|chr1:94189287-94189287|T/A|missense_variant	ARHGAP29|p.D502V|1|0.41|ENSG00000137962|chr1:94189287-94189287|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3110961914062	2	520.310949	1038.60735	0.068472	3.5627E-05	0.22141	0.0001152	0.28989	0.00015083	520.3110921822414	35.939	1.1961	35.939	35.779	36.975	0					87	32	5	0	0	0	0.48389	1	13855	13855		34.173	2.6427	1	35878000			23944	204	15573	15633	24281	24281					0.08958602511438585
LEVYPFIL	8	Unmodified	_LEVYPFIL_					0	0	0			REV__ENST00000481557.1_1_2:209116152-209118617:-|nuORF	REV__ENST00000481557.1_1_2:209116152-209118617:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2877502441406	2	497.286411	992.55827	2.9039	0.0014441	-0.38409	-0.000191	2.5198	0.0012531	497.2863286790788	13.136	0.16213	13.136	13.08	13.242	0					8	3	3	0	0	0	0.79176	1	2988	2988		21.702	1.2205	1	838230	+		23945	14977	15574	15634	24282	24282					0.061693142224726216
LEWIINLL	8	Unmodified	_LEWIINLL_					0	0	0			REV__ENST00000420646.6_1_4:90757949-90758033:-|nuORF	REV__ENST00000420646.6_1_4:90757949-90758033:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.30255126953125	2	507.305136	1012.59572	0.87449	0.00044363	-3.9852	-0.0020217	-3.1108	-0.0015781	507.3036178789152	40.71	0.14729	40.71	40.62	40.767	0					14	7	3	0	0	0	0.54629	1	15517	15517		55.504	2.5675	1	64611	+		23946	19071	15575	15635	24283	24283					0.08992405488095301
LEYAAVSFV	9	Unmodified	_LEYAAVSFV_					0	0	0		GLRA1|p.N333S|1|0.33|ENSG00000145888|chr5:151828982-151828982|T/C|missense_variant	GLRA1|p.N333S|1|0.33|ENSG00000145888|chr5:151828982-151828982|T/C|missense_variant	GLRA1|p.N333S|1|0.33|ENSG00000145888|chr5:151828982-151828982|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.7615661621094	2	499.7633	997.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.015	1	22.015	21.515	22.515	0								0	0	0	0.19749	1	6159	6159		51.335	7.2187	1				23947	11158	15576	15636	24284	24284					0.013192493203860067
LEYAPDRSRRC	11	Carbamidomethyl (C)	_LEYAPDRSRRC(Carbamidomethyl (C))_	LEYAPDRSRRC(1)		LEYAPDRSRRC(67)		0	1	0			REV__nc|ENSG00000140391|O60637-3|TSPAN3	REV__nc|ENSG00000140391|O60637-3|TSPAN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	711.8480224609375	2	711.848967	1421.68338	-1.6556	-0.0011785	0.59472	0.00042335	-1.0608	-0.00075516	711.8495630754352	30.906	0.22913	30.906	30.798	31.027	0					14	5	4	0	0	0	0.25663	1	11602	11602		67.494	24.629	1	372150	+		23948	15073	15577	15637	24285	24285	559				-0.01059368650749093
LEYDPRIY	8	Unmodified	_LEYDPRIY_					0	0	0		ENSG00000134640|ENST00000257068|MTNR1B	ENSG00000134640|ENST00000257068|MTNR1B	ENSG00000134640|ENST00000257068|MTNR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7739868164062	2	534.771657	1067.52876	3.3746	0.0018047	-0.89967	-0.00048112	2.475	0.0013235	534.7711798985674	48.144	0.20654	48.144	48.09	48.297	0					13	10	2	0	0	0	0.64144	1	19156	19156		42.396	7.2441	1	54275			23949	3932	15578	15638	24286	24286					-0.002302497936625514
LEYKNVPT	8	Unmodified	_LEYKNVPT_					0	0	0		ENSG00000164303|ENST00000296741|ENPP6	ENSG00000164303|ENST00000296741|ENPP6	ENSG00000164303|ENST00000296741|ENPP6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.25933837890625	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.485	1	14.485	13.985	14.985	0								0	0	0	1.7419	1	3766	3766		47.657	3.1263	1				23950	5677	15579	15639	24287	24287					0.02454365177618456
LEYLLDIPA	9	Unmodified	_LEYLLDIPA_					0	0	0			REV__nc|ENSG00000011451|O95785-4|WIZ	REV__nc|ENSG00000011451|O95785-4|WIZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.5306701660156	3	349.530464	1045.56956	1.4544	0.00050837	-1.257	-0.00043936	0.19743	6.9009E-05	349.53015026886646	19.42	0.16565	19.42	19.313	19.479	0					10	3	4	0	0	0	0.48389	1	6145	6145		34.173	3.8548	1	1846900	+		23951	12908	15580	15640	24288	24288					0.04860091525961252
LEYLVNTRP	9	Unmodified	_LEYLVNTRP_					0	0	0			REV__POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	REV__POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.806884765625	2	552.806031	1103.59751	-1.2464	-0.000689	1.0745	0.00059401	-0.17183	-9.4989E-05	552.8065726223432	21.8	0.28608	21.8	21.702	21.988	0					8	6	2	0	0	0	0.3269	1	6394	6394		40.778	12.896	1	179780	+		23952	21400	15581	15641	24289	24289					0.0498541450601806
LEYPLQNK	8	Unmodified	_LEYPLQNK_					0	0	0		tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7732849121094	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.654	1	33.654	33.154	34.154	0								0	0	0	1.7419	1	11834	11834		71.296	0	1				23953	22904	15582	15642	24290	24290					0.032220540689422705
LEYQMRPLD	9	Unmodified	_LEYQMRPLD_					0	0	0		AMER1|p.G660D|1|0.76|ENSG00000184675|chrX:64191308-64191308|C/T|missense_variant	AMER1|p.G660D|1|0.76|ENSG00000184675|chrX:64191308-64191308|C/T|missense_variant	AMER1|p.G660D|1|0.76|ENSG00000184675|chrX:64191308-64191308|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.7890014648438	2	582.789524	1163.56449	1.646	0.00095928	-1.8406	-0.0010727	-0.19463	-0.00011343	582.7886364003451	43.702	0.11897	43.702	43.591	43.71	0					5	3	2	0	0	0	0.56424	1	17495	17495		25.574	3.6142	1	51234			23954	140	15583	15643	24291	24291					-0.010745356083134538
LEYTEEEV	8	Unmodified	_LEYTEEEV_					0	0	0		ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2322692871094	2	506.229487	1010.44442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.383	1	25.383	24.883	25.883	0								0	0	0	1.7419	1	8880	8880		57.811	2.3071	1				23955	1223	15584	15644	24292	24292					-0.06038245401077802
LFARPQPLW	9	Unmodified	_LFARPQPLW_					0	0	0		ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.323486328125	2	564.321651	1126.62875	3.4707	0.0019586	-0.31511	-0.00017782	3.1556	0.0017808	564.3214970401891	12.91	1.8512	12.91	12.64	14.491	0					83	39	5	0	0	0	0.56424	1	2809	2809		18.324	18.324	1	7266500			23956	8913	15585	15645	24293	24293					0.07050032330812428
LFATARERY	9	Unmodified	_LFATARERY_					0	0	0		nc|ENSG00000147036|Q6ZV70-2|LANCL3;ENSG00000147036|ENST00000378619|LANCL3	nc|ENSG00000147036|Q6ZV70-2|LANCL3	nc|ENSG00000147036|Q6ZV70-2|LANCL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.8040771484375	2	563.803823	1125.59309	0.39862	0.00022474	0.28813	0.00016245	0.68675	0.00038719	563.8036942429325	28.362	0.49177	28.362	28.238	28.73	0					33	12	4	0	0	0	0.53083	1	10005	10005		29.15	1.2673	1	551990			23957	4760	15586	15646	24294	24294					0.03531950083151969
LFCGICVQFV	10	Unmodified	_LFCGICVQFV_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.7823486328125	2	564.782656	1127.55076	0.35385	0.00019985	-0.18108	-0.00010227	0.17278	9.7581E-05	564.7828137115393	37.815	0.15383	37.815	37.729	37.882	0					7	5	2	0	0	0	0.64178	1	14354	14354		29.15	0	1	85941	+		23958	13790	15587	15647	24295	24295					-0.007914846411267717
LFCSVLCKGR	10	Unmodified	_LFCSVLCKGR_					0	0	0			REV__ENST00000307602.8_1_8:42879272-42879317:+|nuORF	REV__ENST00000307602.8_1_8:42879272-42879317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.3001098632812	2	563.299004	1124.58346	1.8718	0.0010544	1.6044	0.00090378	3.4763	0.0019582	563.299815661747	41.937	0.15851	41.937	41.851	42.009	0					12	7	2	0	0	0	0.44601	1	16468	16468		51.193	5.2204	1	119060	+		23959	18249	15588	15648	24296	24296					0.026147224817350434
LFDAAMRGAL	10	Unmodified	_LFDAAMRGAL_					0	0	0			REV__ENST00000547318.5_1_12:51451861-51453147:+|nuORF	REV__ENST00000547318.5_1_12:51451861-51453147:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7811889648438	2	532.781502	1063.54845	-0.34934	-0.00018612	-0.029478	-1.5705E-05	-0.37881	-0.00020183	532.7817249762375	38.35	0.38078	38.35	38.283	38.664	0					26	20	2	0	0	0	0.44601	1	12936	12936		51.193	5.2204	1	93734	+		23960	20174	15589	15649	24297	24297					0.019218029454577845
LFDAICQVI	9	Unmodified	_LFDAICQVI_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1;REV__ENSG00000159399|ENST00000290573|HK2	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2746887207031	2	511.272978	1020.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.167	1	27.167	26.667	27.667	0								0	0	0	0.33579	1	8627	8627		20.947	0	1		+		23961	15633;15714	15590	15650	24298	24298					0.021958823396403204
LFDDMQTTY	9	Unmodified	_LFDDMQTTY_					0	0	0			REV__nc|ENSG00000127831|P09327-2|VIL1	REV__nc|ENSG00000127831|P09327-2|VIL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.2438354492188	2	567.244615	1132.47468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.494	1	39.494	38.994	39.994	0								0	0	0	0.29774	1	15040	15040		35.618	7.736	1		+		23962	14497	15591	15651	24299	24299					-0.08626210007537338
LFDESPRY	8	Unmodified	_LFDESPRY_					0	0	0			REV__ENST00000354393.6_1_10:69866438-69902705:+|nuORF	REV__ENST00000354393.6_1_10:69866438-69902705:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.749755859375	2	513.748182	1025.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.178	1	25.178	24.678	25.678	0								0	0	0	1.7419	1	7543	7543		40.573	5.3719	1		+		23963	18499	15592	15652	24300	24300					-0.029911093447935855
LFDGFKFR	8	Unmodified	_LFDGFKFR_					0	0	0			REV__tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	REV__tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2798461914062	2	515.279452	1028.54435	-1.5682	-0.00080806	1.5209	0.00078371	-0.04726	-2.4352E-05	515.2805389705289	34.153	0.11501	34.153	34.083	34.198	0					5	3	2	0	0	0	0.35045	1	12074	12074		76.847	8.3619	1	62309	+		23964	21886	15593	15653	24301	24301					0.03122081514038655
LFEKEPHLS	9	Unmodified	_LFEKEPHLS_					0	0	0			REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.19757080078125	3	367.197596	1098.57096	0.75785	0.00027828	-0.88526	-0.00032507	-0.12741	-4.6786E-05	367.1973232860114	31.658	1.5021	31.658	31.452	32.954	0					105	37	5	0	0	0	0.61124	1	11860	11860		14.137	0.68308	1	23975000	+		23965	12947	15594	15654	24302	24302					0.025617256147143053
LFFFLTTPA	9	Unmodified	_LFFFLTTPA_					0	0	0		TMEM63C|p.S689Pfs*10|1|0.46|ENSG00000165548|chr14:77251812-77251812|T/-|frameshift_variant;ENSG00000165548|ENST00000298351|TMEM63C	TMEM63C|p.S689Pfs*10|1|0.46|ENSG00000165548|chr14:77251812-77251812|T/-|frameshift_variant	TMEM63C|p.S689Pfs*10|1|0.46|ENSG00000165548|chr14:77251812-77251812|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7900390625	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.561	1	31.561	31.061	32.061	0								0	0	0	0.27939	1	10469	10469		31.955	0	1				23966	5809	15595	15655	24303	24303					0.04360716596738712
LFGAARGP	8	Unmodified	_LFGAARGP_					0	0	0		ENST00000590278.1_1_19:33696051-33698478:+|nuORF;ENSG00000130881|ENST00000253193|LRP3	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.72412109375	2	394.724313	787.434072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.799	1	16.799	16.299	17.299	0								0	0	0	1.7419	1	4058	4058		28.254	0	1				23967	3681	15596	15656	24304	24304					0.03185281245657734
LFGIDAFTV	9	Unmodified	_LFGIDAFTV_					0	0	0			REV__ENSG00000198674|ENST00000307002|OR10G6	REV__ENSG00000198674|ENST00000307002|OR10G6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.7645263671875	2	491.765843	981.517133	-1.2617	-0.00062045	-3.1227	-0.0015357	-4.3844	-0.0021561	491.76420962772363	31.936	0.1756	31.936	31.818	31.994	0					11	7	2	0	0	0	0.25109	1	10587	10587		55.504	14.078	1	72969	+		23968	17414	15597	15657	24305	24305					0.025635531829948377
LFGKPDRVP	9	Unmodified	_LFGKPDRVP_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.275146484375	2	514.798009	1027.58147	0.67229	0.00034609	0.47214	0.00024306	1.1444	0.00058915	514.7978708678464	19.112	0.44135	19.112	19.021	19.463	0					27	10	5	0	0	0	0.61124	1	5097	5097		17.365	0	1	1441900	+		23969	16534	15598	15658	24306	24306					0.06877753059779934
LFGLRDYEV	9	Unmodified	_LFGLRDYEV_					0	0	0			REV__ENST00000479383.5_1_1:44267185-44297359:+|nuORF	REV__ENST00000479383.5_1_1:44267185-44297359:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.2918701171875	2	556.292756	1110.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.953	1	36.953	36.453	37.453	0								0	0	0	0.2591	1	13975	13975		42.396	0	1		+		23970	19572	15599	15659	24307	24307					0.020097256146982545
LFGTRNTL	8	Unmodified	_LFGTRNTL_					0	0	0			REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.26104736328125	2	461.261259	920.507966	-0.15018	-6.9271E-05	-0.47731	-0.00022016	-0.62748	-0.00028943	461.26110672206516	31.58	0.38907	31.58	31.438	31.827	0					16	8	3	0	0	0	0.41701	1	11931	11931		68.787	0.30212	1	1120500	+		23971	17462	15600	15660	24308	24308					0.04453204617323081
LFGVFMRY	8	Unmodified	_LFGVFMRY_					0	0	0		RHCG|p.V30M|2|0.24|ENSG00000140519|chr15:89496457-89496457|C/T|missense_variant	RHCG|p.V30M|2|0.24|ENSG00000140519|chr15:89496457-89496457|C/T|missense_variant	RHCG|p.V30M|2|0.24|ENSG00000140519|chr15:89496457-89496457|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.771484375	2	516.770406	1031.52626	0.91459	0.00047263	1.752	0.00090537	2.6666	0.001378	516.7711913014002	36.602	0.33255	36.602	36.428	36.76	0					16	9	2	0	0	0	0.66238	1	14235	14235		39.021	7.4917	1	226150			23972	22343	15601	15661	24309	24309					0.011756232677043954
LFGVVGEVVM	10	Unmodified	_LFGVVGEVVM_					0	0	0			REV__ABCA2|p.A1997V|1|0.08|ENSG00000107331|chr9:137011039-137011039|G/A|missense_variant	REV__ABCA2|p.A1997V|1|0.08|ENSG00000107331|chr9:137011039-137011039|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2890625	2	525.288628	1048.5627	1.8932	0.00099448	-0.69195	-0.00036347	1.2012	0.000631	525.2881405151128	41.934	0.17329	41.934	41.818	41.991	0					12	8	2	0	0	0	0.38575	1	15903	15903		57.811	6.4758	1	60197	+		23973	12025	15602	15662	24310	24310					0.04036455373739045
LFHCFEDQI	9	Unmodified	_LFHCFEDQI_					0	0	0			REV__nc|ENSG00000103852|Q5W5X9-2|TTC23	REV__nc|ENSG00000103852|Q5W5X9-2|TTC23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.2633056640625	2	576.263142	1150.51173	0.042862	2.47E-05	1.0145	0.00058461	1.0573	0.00060931	576.2633526676763	30.12	0.15716	30.12	30.014	30.171	0					9	6	2	0	0	0	0.25109	1	9870	9870		55.504	8.2765	1	54687	+		23974	13699	15603	15663	24311	24311					-0.057504936711211485
LFHLTAGSP	9	Unmodified	_LFHLTAGSP_					0	0	0			REV__ENST00000248121.6_1_16:2043508-2043775:+|nuORF	REV__ENST00000248121.6_1_16:2043508-2043775:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7554016113281	2	471.75581	941.497067	-0.38914	-0.00018358	-0.23999	-0.00011322	-0.62913	-0.0002968	471.7555749541361	32.987	0.29513	32.987	32.876	33.171	0					30	13	4	0	0	0	0.50461	1	10683	10683		31.955	0	1	638480	+		23975	17954	15604	15664	24312	24312					0.023978022430469537
LFHPSNVEM	9	Oxidation (M)	_LFHPSNVEM(Oxidation (M))_		LFHPSNVEM(1)		LFHPSNVEM(90)	0	0	1		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2562255859375	2	545.255317	1088.49608	1.1891	0.00064835	-0.93775	-0.00051132	0.25133	0.00013704	545.2549240981751	27.616	0.25985	27.616	27.458	27.718	0					21	8	4	0	0	0	0.063823	1	8504	8504		90.37	39.034	1	364040			23976	4979	15605	15665	24313	24313		204			-0.044627801881688356
LFHPSNVEM	9	Oxidation (M)	_LFHPSNVEM(Oxidation (M))_		LFHPSNVEM(1)		LFHPSNVEM(120)	0	0	1		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.255859375	2	545.255317	1088.49608	0.39651	0.0002162	-0.10401	-5.6714E-05	0.29249	0.00015948	545.255358883491	27.83	0.2732	27.83	27.692	27.965	0					20	6	4	0	0	0	0.01873	1	9755	9755		124.08	50.105	1	1854500			23977	4979	15605	15665	24314	24314		204			-0.044627801881688356
LFHPSNVEM	9	Oxidation (M)	_LFHPSNVEM(Oxidation (M))_		LFHPSNVEM(1)		LFHPSNVEM(62)	0	0	1		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.255615234375	2	545.255317	1088.49608	0.52264	0.00028497	-0.36615	-0.00019964	0.15649	8.5327E-05	545.2550299249702	27.608	0.21801	27.608	27.495	27.713	0					14	7	3	0	0	0	0.19605	1	8812	8812		62.107	10.772	1	183590			23978	4979	15605	15665	24315	24315		204			-0.044627801881688356
LFHPSNVEM	9	Oxidation (M)	_LFHPSNVEM(Oxidation (M))_		LFHPSNVEM(1)		LFHPSNVEM(90)	0	0	1		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.255615234375	2	545.255317	1088.49608	1.9225	0.0010483	-1.5849	-0.00086418	0.33762	0.00018409	545.2545726169462	27.855	0.26641	27.855	27.697	27.964	0					19	5	5	0	0	0	0.063823	1	10152	10152		90.37	26.163	1	1333900			23979	4979	15605	15665	24316	24316		204			-0.044627801881688356
LFHPSNVEM	9	Oxidation (M)	_LFHPSNVEM(Oxidation (M))_		LFHPSNVEM(1)		LFHPSNVEM(82)	0	0	1		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.256591796875	2	545.255317	1088.49608	-1.497	-0.00081623	2.1515	0.0011731	0.6545	0.00035687	545.2564757592886	27.693	0.26397	27.693	27.522	27.786	0					15	6	3	0	0	0	0.087861	1	9066	9066		82.241	21.269	1	388580			23980	4979	15605	15665	24317	24317		204			-0.044627801881688356
LFHPSNVEM	9	Unmodified	_LFHPSNVEM_					0	0	0		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2586669921875	2	537.257859	1072.50117	0.21524	0.00011564	0.097437	5.2349E-05	0.31268	0.00016799	537.2580145448002	35.226	0.65025	35.226	35.061	35.711	0					54	17	5	0	0	0	0.063823	1	13163	13163		90.37	19.074	1	6855000			23981	4979	15605	15666	24318	24318					-0.03218476325537267
LFHPSNVEM	9	Unmodified	_LFHPSNVEM_					0	0	0		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2581787109375	2	537.257859	1072.50117	-0.36568	-0.00019646	0.85023	0.00045679	0.48456	0.00026033	537.2584704098632	35.014	0.37916	35.014	34.914	35.293	0					44	16	4	0	0	0	0.24095	1	11814	11814		56.721	14.247	1	1145700			23982	4979	15605	15666	24319	24319					-0.03218476325537267
LFHPSNVEM	9	Unmodified	_LFHPSNVEM_					0	0	0		ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2569580078125	2	537.257859	1072.50117	0.2941	0.00015801	-0.22492	-0.00012084	0.069182	3.7169E-05	537.2576757757839	35.228	0.25965	35.228	35.123	35.382	0					16	7	3	0	0	0	0.35021	1	13619	13619		45.972	8.8131	1	297420			23983	4979	15605	15666	24320	24320					-0.03218476325537267
LFHVEPAF	8	Unmodified	_LFHVEPAF_					0	0	0			REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2501525878906	2	480.252903	958.491253	-2.9252	-0.0014048	-1.7433	-0.00083722	-4.6684	-0.002242	480.25196633512155	29.292	0.29848	29.292	29.159	29.458	0					10	7	2	0	0	0	0.64096	1	9842	9842		42.474	0.078325	1	183530	+		23984	18719	15606	15667	24321	24321					0.010347037313749752
LFIATSQKF	9	Unmodified	_LFIATSQKF_					0	0	0		nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7999877929688	2	527.800217	1053.58588	0.10574	5.581E-05	0.66788	0.00035251	0.77362	0.00040832	527.8006018919561	39.793	0.18101	39.793	39.738	39.919	0					11	6	2	0	0	0	0.12278	1	15170	15170		87.696	32.192	1	197390			23985	1128	15607	15668	24322	24322					0.06123217482695509
LFIATSQKF	9	Unmodified	_LFIATSQKF_					0	0	0		nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.8006591796875	2	527.800217	1053.58588	1.7524	0.00092492	-1.2831	-0.00067724	0.46927	0.00024768	527.7994274482621	39.782	0.2635	39.782	39.672	39.936	0					19	9	3	0	0	0	0.0088974	1	15653	15653		153.04	76.189	1	438320			23986	1128	15607	15668	24323	24323					0.06123217482695509
LFIDKTTGHF	10	Unmodified	_LFIDKTTGHF_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.8154296875	2	589.813856	1177.61316	3.1841	0.001878	-0.7	-0.00041287	2.4841	0.0014652	589.8139870629092	31.854	1.0694	31.854	31.537	32.607	0					76	21	7	0	0	0	0.38194	1	12057	12057		58.23	5.141	1	2503700			23987	2495	15608	15669	24324	24324					0.031457010230724336
LFIEGKFY	8	Unmodified	_LFIEGKFY_					0	0	0			REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A	REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7762451171875	2	508.776211	1015.53787	-0.10249	-5.2142E-05	0.84536	0.0004301	0.74287	0.00037796	508.776999536012	34.939	0.39797	34.939	34.721	35.119	0					38	17	3	0	0	0	0.60719	1	11423	11423		47.916	1.9636	1	286290	+		23988	14331	15609	15670	24325	24325					0.030721435626674065
LFIGLSAAY	9	Unmodified	_LFIGLSAAY_					0	0	0			REV__ADAD2|p.L200*|1|0.19|ENSG00000140955|chr16:84194966-84194966|C/-|frameshift_variant	REV__ADAD2|p.L200*|1|0.19|ENSG00000140955|chr16:84194966-84194966|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2396240234375	2	477.768386	953.522219	-0.32971	-0.00015753	-0.52012	-0.00024849	-0.84983	-0.00040602	477.7687887262832	34.356	0.078991	34.356	34.281	34.36	0					4	2	2	0	0	0	0.41354	1	12149	12149		40.573	0	1	31454	+		23989	12062	15610	15671	24326	24326					0.04359857045608351
LFIISHPD	8	Unmodified	_LFIISHPD_					0	0	0			REV__ENSG00000139044|ENST00000266383|B4GALNT3	REV__ENSG00000139044|ENST00000266383|B4GALNT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2579040527344	2	471.258185	940.501818	0.57281	0.00026994	-1.112	-0.00052405	-0.53921	-0.00025411	471.2576379310349	34.726	0.85569	34.726	34.474	35.33	0					36	17	4	0	0	0	0.68754	1	13326	13326		35.201	0	1	2224300	+		23990	15009	15611	15672	24327	24327					0.029186863857944445
LFINESAK	8	Unmodified	_LFINESAK_					0	0	0		CON__P34955	CON__P34955	CON__P34955	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2560119628906	2	461.255643	920.496732	0.099587	4.5935E-05	-0.60239	-0.00027786	-0.50281	-0.00023192	461.2553743959352	34.162	0.41349	34.162	34.038	34.452	0					51	19	4	0	0	0	0.26534	1	11125	11125		94.006	0.86318	1	3707900		+	23991	643	15612	15673	24328	24328					0.03330382523188291
LFIPFNPLA	9	Unmodified	_LFIPFNPLA_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.30029296875	2	516.299853	1030.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.361	1	44.361	43.861	44.861	0								0	0	0	0.27939	1	17279	17279		40.573	1.5511	1				23992	5035	15613	15674	24329	24329					0.07108422833653094
LFIQPAGIL	9	Unmodified	_LFIQPAGIL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.30120849609375	2	486.299853	970.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.601	1	33.601	33.101	34.101	0								0	0	0	0.1633	1	11811	11811		24.203	0	1				23993	3575	15614	15675	24330	24330					0.09868422833653767
LFISTTPDSRK	11	Unmodified	_LFISTTPDSRK_					0	0	0		ENST00000466600.1_1_1:186823486-186908166:+|nuORF;PLA2G4A|p.G198Vfs*11|1|0.26|ENSG00000116711|chr1:186932793-186932793|G/-|frameshift_variant;ENSG00000116711|ENST00000367466|PLA2G4A	ENST00000466600.1_1_1:186823486-186908166:+|nuORF	ENST00000466600.1_1_1:186823486-186908166:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	632.8484497070312	2	632.848427	1263.6823	-0.2	-0.00012657	-0.1123	-7.1068E-05	-0.3123	-0.00019764	632.8483795593494	35.738	0.082222	35.738	35.662	35.744	0					4	2	2	0	0	0	0.29191	1	13861	13861		63.534	0	1	76204			23994	2996	15615	15676	24331	24331					0.061007402519635434
LFKLVSEQ	8	Unmodified	_LFKLVSEQ_					0	0	0		ENST00000445286.3_1_12:38597181-38597481:+|nuORF	ENST00000445286.3_1_12:38597181-38597481:+|nuORF	ENST00000445286.3_1_12:38597181-38597481:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.27874755859375	2	482.279118	962.543683	-0.61382	-0.00029603	-0.19368	-9.3408E-05	-0.8075	-0.00038944	482.27900334949726	37.952	0.62685	37.952	37.708	38.334	0					35	13	5	0	0	0	0.2428	1	14871	14871		148.04	27.737	1	8063200			23995	9612	15616	15677	24332	24332					0.06091242074330694
LFKSYLRH	8	Unmodified	_LFKSYLRH_					0	0	0			REV__ENSG00000150787|ENST00000280362|PTS	REV__ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.3038940429688	2	532.306001	1062.59745	0.28871	0.00015368	-3.2294	-0.001719	-2.9407	-0.0015654	532.3040226771368	23.187	0.2181	23.187	23.028	23.246	0					8	4	3	0	0	0	0.66372	1	7942	7942		38.806	3.1879	1	167030	+		23996	15455	15617	15678	24333	24333					0.06865459296682275
LFKVDPGS	8	Unmodified	_LFKVDPGS_					0	0	0			REV__ENST00000229340.9_1_12:120532979-120533294:-|nuORF	REV__ENST00000229340.9_1_12:120532979-120533294:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7350158691406	2	431.737086	861.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.035	1	16.035	15.535	16.535	0								0	0	0	1.7419	1	4358	4358		53.351	3.3269	1		+		23997	17911	15618	15679	24334	24334					0.023347109774249475
LFLARLFPL	9	Unmodified	_LFLARLFPL_					0	0	0		ENST00000582313.5_1_18:245829-268019:-|nuORF;THOC1|p.D370Mfs*9|1|0.31|ENSG00000079134|chr18:225119-225119|G/-|frameshift_variant;nc|ENSG00000079134|Q96FV9-2|THOC1;THOC1|p.I431Nfs*6|1|0.23|ENSG00000079134|chr18:224096-224097|-/T|frameshift_variant;ENST00000578529.5_1_18:214628-260326:-|nuORF;ENSG00000079134|ENST00000261600|THOC1	ENST00000582313.5_1_18:245829-268019:-|nuORF	ENST00000582313.5_1_18:245829-268019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.89996337890625	3	363.898822	1088.67464	3.1374	0.0011417	-0.183	-6.6592E-05	2.9544	0.0010751	363.89882345672953	26.573	0.41895	26.573	26.417	26.836	0					22	8	4	0	0	0	0.37197	1	9393	9393		44.117	4.864	1	1159600			23998	1611	15619	15680	24335	24335					0.13384677513022325
LFLCIRICV	9	Unmodified	_LFLCIRICV_					0	0	0			REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF	REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.8104858398438	2	540.308841	1078.60313	-1.4793	-0.00079929	-1.7603	-0.00095109	-3.2396	-0.0017504	540.307424851767	34.568	0.27588	34.568	34.369	34.645	0					13	8	2	0	0	0	0.21116	2	12202	12202;12217		60.294	5.5293	1	103490	+		23999	19439	15620	15681	24336;24337	24336					0.06697098492509213
LFLCRMQL	8	Unmodified	_LFLCRMQL_					0	0	0		EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant;nc|ENSG00000183317|Q5JZY3-3|EPHA10;ENSG00000183317|ENST00000373048|EPHA10;nc|ENSG00000183317|Q5JZY3-2|EPHA10	EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant	EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.276611328125	2	512.277541	1022.54053	-1.7089	-0.00087541	0.92938	0.0004761	-0.77948	-0.00039931	512.278074340487	35.748	0.17725	35.748	35.681	35.858	0					13	6	3	0	0	0	0.60719	1	12744	12744		37.028	0	1	156400			24000	6953	15621	15682	24338	24338					0.030159524243231317
LFLCRWVS	8	Unmodified	_LFLCRWVS_					0	0	0		ENST00000476954.1_1_1:156220380-156221068:-|nuORF	ENST00000476954.1_1_1:156220380-156221068:-|nuORF	ENST00000476954.1_1_1:156220380-156221068:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2772216796875	2	512.275855	1022.53716	1.1953	0.00061233	1.9693	0.0010088	3.1646	0.0016212	512.2767235601391	35.698	0.25492	35.698	35.591	35.846	0					21	12	3	0	0	0	0.49887	1	11691	11691		60.294	0.17569	1	273900			24001	9915	15622	15683	24339	24339					0.02679025641964472
LFLCRWVS	8	Unmodified	_LFLCRWVS_					0	0	0		ENST00000476954.1_1_1:156220380-156221068:-|nuORF	ENST00000476954.1_1_1:156220380-156221068:-|nuORF	ENST00000476954.1_1_1:156220380-156221068:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.27685546875	2	512.275855	1022.53716	1.0541	0.00054	0.74228	0.00038025	1.7964	0.00092025	512.2763221636482	35.983	0.39274	35.983	35.865	36.257	0					22	10	3	0	0	0	0.49887	1	13528	13528		60.294	10.269	1	1346900			24002	9915	15622	15683	24340	24340					0.02679025641964472
LFLEHHGNLS	10	Unmodified	_LFLEHHGNLS_					0	0	0		ENST00000393630.7_1_12:62931442-62931897:+|nuORF	ENST00000393630.7_1_12:62931442-62931897:+|nuORF	ENST00000393630.7_1_12:62931442-62931897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.8009033203125	2	583.80128	1165.58801	-1.7175	-0.0010027	1.0259	0.00059894	-0.69157	-0.00040374	583.8017786370631	24.725	0.3271	24.725	24.626	24.953	0					19	7	4	0	0	0	0.057264	1	7741	7741		107.01	16.407	1	764470			24003	9159	15623	15684	24341	24341					0.011836462205337739
LFLFGGNNFI	10	Unmodified	_LFLFGGNNFI_					0	0	0		nc|ENSG00000212710|Q9HC47|CTAGE1	nc|ENSG00000212710|Q9HC47|CTAGE1	nc|ENSG00000212710|Q9HC47|CTAGE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.3064575195312	2	571.305667	1140.59678	-0.02625	-1.4997E-05	1.9333	0.0011045	1.9071	0.0010895	571.3066000536896	40.164	0.19161	40.164	40.097	40.288	0					11	8	2	0	0	0	0.536	1	15310	15310		29.15	0	1	79230			24004	11757	15624	15685	24342	24342					0.03210619856986341
LFLGLAAGP	9	Unmodified	_LFLGLAAGP_					0	0	0		ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7555236816406	2	429.757821	857.501089	-2.8261	-0.0012145	-2.0454	-0.00087904	-4.8715	-0.0020936	429.75681702748943	33.842	0.29438	33.842	33.733	34.027	0					9	8	2	0	0	0	0.43174	1	11912	11912		39.021	2.5747	1	153110			24005	8368	15625	15686	24343	24343					0.06663891736752703
LFLGRCHSF	9	Unmodified	_LFLGRCHSF_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.278564453125	2	540.276386	1078.53822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.738	1	45.738	45.238	46.238	0								0	0	0	0.29774	1	18325	18325		35.618	0.41757	1				24006	11553	15626	15687	24344	24344					0.0020924001087223587
LFLHPPHM	8	Unmodified	_LFLHPPHM_					0	0	0		ENST00000532315.1_1_11:121975901-121976138:-|nuORF	ENST00000532315.1_1_11:121975901-121976138:-|nuORF	ENST00000532315.1_1_11:121975901-121976138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2624206542969	2	496.262748	990.510943	0.73818	0.00036633	-2.5597	-0.0012703	-1.8215	-0.00090393	496.26144572728225	11.988	0.19644	11.988	11.954	12.151	0					9	5	2	0	0	0	0.77013	1	2653	2653		24.504	5.144	1	370440			24007	10449	15627	15688	24345	24345					0.015307564704812648
LFLLLIRAM	9	Unmodified	_LFLLLIRAM_					0	0	0			REV__ENSG00000125879|ENST00000246081|OTOR	REV__ENSG00000125879|ENST00000246081|OTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.89990234375	3	363.899946	1088.67801	0.47718	0.00017365	-0.60259	-0.00021928	-0.12541	-4.5638E-05	363.8998007566898	26.572	0.44518	26.572	26.481	26.927	0					20	10	3	0	0	0	0.54267	1	9195	9195		27.882	2.3082	1	647810	+		24008	14447	15628	15689	24346	24346					0.13721604295369616
LFLRGTAM	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LFLRGTAM_					1	0	0			REV__ENST00000584803.1_1_17:8788046-8788097:-|nuORF	REV__ENST00000584803.1_1_17:8788046-8788097:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7601623535156	2	475.760038	949.505523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.904	1	34.904	34.404	35.404	0								0	0	0	1.7419	1	12391	12391		40.573	7.057	1		+		24009	20470	15629	15690	24347	24347					0.028750328880278175
LFLRGVGCF	9	Unmodified	_LFLRGVGCF_					0	0	0		ENST00000266673.9_1_12:72080587-72083430:+|nuORF	ENST00000266673.9_1_12:72080587-72083430:+|nuORF	ENST00000266673.9_1_12:72080587-72083430:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2786865234375	2	506.275855	1010.53716	2.937	0.0014869	0.38636	0.0001956	3.3234	0.0016825	506.27605163098673	39.6	0.50766	39.6	39.317	39.825	0					30	11	4	0	0	0	0.23186	1	15609	15609		57.811	0.35863	1	1415600			24010	8356	15630	15691	24348	24348					0.03231025641980523
LFLSMRPQ	8	Unmodified	_LFLSMRPQ_					0	0	0		ENST00000420827.2_1_4:68543339-68543378:-|nuORF	ENST00000420827.2_1_4:68543339-68543378:-|nuORF	ENST00000420827.2_1_4:68543339-68543378:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2717590332031	2	496.273312	990.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.052	1	15.052	14.552	15.552	0								0	0	0	1.7419	1	3300	3300		90.777	0	1				24011	9396	15631	15692	24349	24349					0.03642721779351632
LFLTGEKL	8	Unmodified	_LFLTGEKL_					0	0	0			REV__ENST00000262554.6_1_9:94821588-94830281:-|nuORF	REV__ENST00000262554.6_1_9:94821588-94830281:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7761535644531	2	460.776211	919.537869	-0.10399	-4.7914E-05	0.28103	0.00012949	0.17705	8.1579E-05	460.77614199568103	36.847	0.5414	36.847	36.637	37.178	0					35	24	2	0	0	0	0.7126	1	13155	13155		31.955	5.1588	1	69823	+		24012	18032	15632	15693	24350	24350					0.07488143562670757
LFLTSNLL	8	Unmodified	_LFLTSNLL_					0	0	0			REV__ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	REV__ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7748718261719	2	460.776211	919.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.776	1	36.776	36.276	37.276	0								0	0	0	1.7419	1	12052	12052		57.811	0	1		+		24013	15592	15633	15694	24351	24351					0.07488143562670757
LFLTSNLL	8	Unmodified	_LFLTSNLL_					0	0	0			REV__ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	REV__ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.776123046875	2	460.776211	919.537869	-0.45727	-0.0002107	0.17432	8.032E-05	-0.28295	-0.00013038	460.7762350800498	37.016	0.89574	37.016	36.778	37.674	0					49	18	3	0	0	0	0.3961	1	14547	14547		71.296	4.8664	1	410930	+		24014	15592	15633	15694	24352	24352					0.07488143562670757
LFLTTTECK	9	Unmodified	_LFLTTTECK_					0	0	0			REV__ENST00000381584.5_2_10:225952-243884:+|nuORF	REV__ENST00000381584.5_2_10:225952-243884:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.275634765625	2	528.275718	1054.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.131	1	34.131	33.631	34.631	0								0	0	0	0.28164	1	13049	13049		38.806	0	1		+		24015	18786	15634	15695	24353	24353					0.011795611314255439
LFLVLSQDQ	9	Unmodified	_LFLVLSQDQ_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7965698242188	2	531.795132	1061.57571	3.4177	0.0018175	-3.709	-0.0019724	-0.29127	-0.0001549	531.7933422863538	47.546	0.15006	47.546	47.478	47.628	0					13	8	2	0	0	0	0.24095	1	18963	18963		56.721	10.769	1	64519	+		24016	16647	15635	15696	24354	24354					0.04738609757487211
LFLVSTSPG	9	Unmodified	_LFLVSTSPG_					0	0	0			REV__ENSG00000204671|ENST00000377035|IL31	REV__ENSG00000204671|ENST00000377035|IL31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7571105957031	2	460.758018	919.501483	0.72238	0.00033284	-2.2434	-0.0010337	-1.521	-0.00070083	460.75708169429987	37.749	0.19846	37.749	37.62	37.819	0					11	6	2	0	0	0	0.43426	1	14776	14776		38.806	0	1	79365	+		24017	17496	15636	15697	24355	24355					0.03851266665958519
LFLWPQKK	8	Unmodified	_LFLWPQKK_					0	0	0		ENST00000428826.6_1_17:40854213-40854450:-|nuORF	ENST00000428826.6_1_17:40854213-40854450:-|nuORF	ENST00000428826.6_1_17:40854213-40854450:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.324951171875	2	530.32112	1058.62769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.749	1	47.749	47.249	48.249	0								0	0	0	1.7419	1	19033	19033		28.254	0	1				24018	9470	15637	15698	24356	24356					0.1007181796187524
LFMLLAMF	8	Unmodified	_LFMLLAMF_					0	0	0		ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.18060302734375	3	329.179832	984.517667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.759	1	45.759	45.259	46.259	0								0	0	0	1.7419	1	16998	16998		19.36	7.1531	1				24019	7974	15638	15699	24357	24357					0.0247893330684974
LFNAHMGI	8	Unmodified	_LFNAHMGI_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7322692871094	2	451.73128	901.448008	2.5273	0.0011417	-0.11615	-5.2469E-05	2.4111	0.0010892	451.7312367479819	26.077	0.56848	26.077	25.866	26.434	0					29	11	3	0	0	0	0.66238	1	9133	9133		39.021	39.021	1	1713700			24020	3057	15639	15700	24358	24358					-0.006658093175474278
LFNGWENPG	9	Unmodified	_LFNGWENPG_					0	0	0		ENST00000594883.1_1_19:57688295-57689024:+|nuORF	ENST00000594883.1_1_19:57688295-57689024:+|nuORF	ENST00000594883.1_1_19:57688295-57689024:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.241943359375	2	517.240524	1032.46649	1.552	0.00080277	1.3881	0.00071799	2.9401	0.0015208	517.2412857347203	39.962	0.23689	39.962	39.867	40.104	0					12	5	3	0	0	0	0.45358	1	15844	15844		37.159	1.5408	1	280860			24021	10991	15640	15701	24359	24359					-0.04843976142001338
LFNRRRER	8	Unmodified	_LFNRRRER_					0	0	0		ENSG00000158516|ENST00000222481|CPA2	ENSG00000158516|ENST00000222481|CPA2	ENSG00000158516|ENST00000222481|CPA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8345947265625	2	573.83378	1145.65301	1.6693	0.00095792	1.2539	0.0007195	2.9232	0.0016774	573.8345847332739	37.479	0.56915	37.479	37.257	37.826	0					35	17	3	0	0	0	0.69548	1	14170	14170		17.365	0	1	237330			24022	5266	15641	15702	24360	24360					0.08600685537021491
LFNVADASRH	10	Unmodified	_LFNVADASRH_					0	0	0			REV__tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	REV__tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.2886352539062	2	565.291079	1128.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.292	1	38.292	37.792	38.792	0								0	0	0	0.4044	1	12496	12496		29.17	0.020503	1		+		24023	21934	15642	15703	24361	24361					0.008464755607064944
LFPLAPQE	8	Unmodified	_LFPLAPQE_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7506103515625	2	457.752736	913.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.37	1	33.37	32.87	33.87	0								0	0	0	1.7419	1	10845	10845		44.117	1.7207	1				24024	1567	15643	15704	24362	24362					0.03071284011514308
LFPPGRGAW	9	Unmodified	_LFPPGRGAW_					0	0	0		ENST00000431183.6_2_2:130934202-130939226:-|nuORF	ENST00000431183.6_2_2:130934202-130939226:-|nuORF	ENST00000431183.6_2_2:130934202-130939226:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.771484375	2	500.771794	999.529036	-0.99559	-0.00049856	-0.090954	-4.5547E-05	-1.0865	-0.00054411	500.7718072933735	20.95	0.41157	20.95	20.659	21.071	0					24	13	2	0	0	0	0.27781	1	5884	5884		52.299	0	1	147340			24025	9499	15644	15705	24363	24363					0.029252147168449483
LFPQAAVQS	9	Unmodified	_LFPQAAVQS_					0	0	0			REV__ENST00000336614.8_1_19:58967852-58967984:+|nuORF	REV__ENST00000336614.8_1_19:58967852-58967984:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7610168457031	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.955	1	32.955	32.455	33.455	0								0	0	0	0.35507	1	10689	10689		24.203	1.1603	1		+		24026	18415	15645	15706	24364	24364					0.026257848974637454
LFPRNEVKV	9	Unmodified	_LFPRNEVKV_					0	0	0			REV__ENST00000474900.5_1_11:132180116-132205037:+|nuORF	REV__ENST00000474900.5_1_11:132180116-132205037:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.3228149414062	2	551.324391	1100.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.157	1	22.157	21.657	22.657	0								0	0	0	0.27939	1	6478	6478		11.511	0	1		+		24027	16892	15646	15707	24365	24365					0.08793711122598324
LFPSLELR	8	Unmodified	_LFPSLELR_					0	0	0			REV__ENST00000328405.6_1_3:19189957-19190221:+|nuORF	REV__ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.78729248046875	2	487.78711	973.559667	-1.2461	-0.00060781	1.8821	0.00091807	0.63605	0.00031026	487.78794730498475	42.652	0.15375	42.652	42.583	42.736	0					16	9	2	0	0	0	0.7126	1	14034	14034		31.955	2.7848	1	107090	+		24028	18368	15647	15708	24366	24366					0.07182948311219661
LFQEGSRAF	9	Unmodified	_LFQEGSRAF_					0	0	0		ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7694702148438	2	527.769448	1053.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.756	1	36.756	36.256	37.256	0								0	0	0	0.1836	1	13162	13162		53.351	10.955	1				24029	2121	15648	15709	24367	24367					-0.00027714216571439465
LFQLTESGK	9	Unmodified	_LFQLTESGK_					0	0	0		ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENST00000305699.15_1_16:89806300-89831390:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7799072265625	2	511.779482	1021.54441	0.3993	0.00020435	-0.2254	-0.00011536	0.1739	8.8998E-05	511.7795609863816	34.638	0.16499	34.638	34.531	34.696	0					6	4	2	0	0	0	0.41113	1	12278	12278		40.778	0.20554	1	69306			24030	8515	15649	15710	24368	24368					0.03450036723370431
LFQNITLED	9	Unmodified	_LFQNITLED_					0	0	0		ENST00000472081.1_1_19:42131969-42133331:-|nuORF;ENSG00000105352|ENST00000221954|CEACAM4	ENST00000472081.1_1_19:42131969-42133331:-|nuORF	ENST00000472081.1_1_19:42131969-42133331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7820434570312	2	546.782222	1091.54989	1.8531	0.0010133	-2.0016	-0.0010944	-0.14846	-8.1173E-05	546.7812262101994	31.035	0.50279	31.035	30.935	31.438	0					28	11	4	0	0	0	0.063823	1	11674	11674		90.37	24.904	1	2957300			24031	2346	15650	15711	24369	24369					0.007777155151870829
LFQNKVIK	8	Unmodified	_LFQNKVIK_					0	0	0		ENST00000295598.9_1_1:116926636-116926729:+|nuORF	ENST00000295598.9_1_1:116926636-116926729:+|nuORF	ENST00000295598.9_1_1:116926636-116926729:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.3104248046875	2	495.310752	988.606951	-0.65768	-0.00032576	0.42975	0.00021286	-0.22793	-0.0001129	495.31099994758364	40.416	0.16111	40.416	40.308	40.469	0					5	3	2	0	0	0	0.66372	1	16056	16056		38.806	0	1	105860			24032	8450	15651	15712	24370	24370					0.11219227582228086
LFRCAASF	8	Unmodified	_LFRCAASF_					0	0	0		ENST00000305963.2_1_X:135053232-135055898:-|nuORF	ENST00000305963.2_1_X:135053232-135055898:-|nuORF	ENST00000305963.2_1_X:135053232-135055898:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.734375	2	457.73128	913.448008	4.3176	0.0019763	2.4372	0.0011156	6.7549	0.0030919	457.73236258585996	30.455	0.15703	30.455	30.393	30.55	0					7	5	2	0	0	0	0.61938	1	10014	10014		45.952	5.3793	1	79712			24033	8517	15652	15713	24371	24371					-0.012178093175634785
LFRFVGLQ	8	Unmodified	_LFRFVGLQ_					0	0	0		ENST00000262995.8_1_4:144258139-144258352:+|nuORF	ENST00000262995.8_1_4:144258139-144258352:+|nuORF	ENST00000262995.8_1_4:144258139-144258352:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2880859375	2	490.28982	978.565087	-0.046499	-2.2798E-05	-1.9377	-0.00095006	-1.9842	-0.00097286	490.2892809385032	23.257	0.19761	23.257	23.1	23.298	0					7	5	2	0	0	0	0.65276	1	6709	6709		40.573	1.7665	1	65370			24034	8313	15653	15714	24372	24372					0.07494671893698523
LFRLPAWPQ	9	Unmodified	_LFRLPAWPQ_					0	0	0			REV__ENST00000461013.5_1_5:131713711-131714174:+|nuORF	REV__ENST00000461013.5_1_5:131713711-131714174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3234252929688	2	564.321651	1126.62875	1.8906	0.0010669	1.0858	0.00061276	2.9764	0.0016796	564.32225199511	12.933	1.6033	12.933	12.63	14.234	0					84	35	4	0	0	0	0.61124	1	3147	3147		7.6903	4.0059	1	8887000	+		24035	19378	15654	15715	24373	24373					0.0705003233078969
LFSEAVKM	8	Unmodified	_LFSEAVKM_					0	0	0		ART3|p.A238Lfs*10|1|0.23|ENSG00000156219|chr4:76082462-76082462|G/-|frameshift_variant;nc|ENSG00000156219|Q13508-2|ART3;ENST00000513494.5_1_4:76997042-77020397:+|nuORF;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3	ART3|p.A238Lfs*10|1|0.23|ENSG00000156219|chr4:76082462-76082462|G/-|frameshift_variant	ART3|p.A238Lfs*10|1|0.23|ENSG00000156219|chr4:76082462-76082462|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.74603271484375	2	462.746596	923.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.737	1	17.737	17.237	18.237	0								0	0	0	1.7419	1	4505	4505		12.959	0	1				24036	232	15655	15716	24374	24374					0.013839242768312943
LFSGCVSPAV	10	Unmodified	_LFSGCVSPAV_					0	0	0		ENST00000403096.7_1_2:3653453-3653594:+|nuORF	ENST00000403096.7_1_2:3653453-3653594:+|nuORF	ENST00000403096.7_1_2:3653453-3653594:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2471618652344	2	490.249503	978.484453	-0.045757	-2.2432E-05	-3.8845	-0.0019044	-3.9302	-0.0019268	490.24739121847847	19.995	0.10553	19.995	19.928	20.034	0					5	3	2	0	0	0	0.57532	1	5280	5280		37.159	1.5408	1	93428			24037	9261	15656	15717	24375	24375					-0.0056497721150208235
LFSGFLPK	8	Unmodified	_LFSGFLPK_					0	0	0			REV__ENSG00000183024|ENST00000328890|OR1G1	REV__ENSG00000183024|ENST00000328890|OR1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.76348876953125	2	454.765646	907.516739	0.72112	0.00032794	-4.4131	-0.0020069	-3.6919	-0.001679	454.76358186276354	35.95	0.23894	35.95	35.818	36.057	0					10	7	2	0	0	0	0.64096	1	13982	13982		42.474	1.9018	1	200920	+		24038	16907	15657	15718	24376	24376					0.05928178253805072
LFSGKADITK	10	Unmodified	_LFSGKADITK_					0	0	0		ENSG00000241322|ENST00000395906|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.3092651367188	2	540.308406	1078.60226	0.66518	0.0003594	0.45151	0.00024396	1.1167	0.00060336	540.3086024968272	34.643	0.2606	34.643	34.489	34.75	0					13	5	3	0	0	0	0.43008	1	13285	13285		52.937	5.2794	1	500850			24039	7938	15658	15719	24377	24377					0.06610298648774915
LFSIVCFQY	9	Carbamidomethyl (C)	_LFSIVC(Carbamidomethyl (C))FQY_	LFSIVC(1)FQY		LFSIVC(53)FQY		0	1	0			REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF	REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7959594726562	2	588.791535	1175.56852	3.1861	0.001876	1.3089	0.00077066	4.495	0.0026466	588.7924684173404	41.436	0.62207	41.436	41.256	41.878	0					63	16	6	0	0	0	0.26904	1	16433	16433		53.351	9.2347	1	16460000	+		24040	19734	15659	15720	24378	24378	696				-0.012244461146110552
LFSLCHCLW	9	Unmodified	_LFSLCHCLW_					0	0	0		ENST00000293880.9_1_11:57100225-57103093:-|nuORF	ENST00000293880.9_1_11:57100225-57103093:-|nuORF	ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2666625976562	2	561.267173	1120.51979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.803	1	46.803	46.303	47.303	0								0	0	0	0.34907	1	18716	18716		25.45	0	1				24041	8443	15660	15721	24379	24379					-0.03564637955355465
LFSLFFYM	8	Unmodified	_LFSLFFYM_					0	0	0			REV__OR1L8|p.T58A|1|0.25|ENSG00000171496|chr9:122568306-122568306|T/C|missense_variant	REV__OR1L8|p.T58A|1|0.25|ENSG00000171496|chr9:122568306-122568306|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2675170898438	2	534.267164	1066.51978	1.1477	0.0006132	-1.6775	-0.00089624	-0.52977	-0.00028304	534.2663648719969	34.113	0.1889	34.113	34.012	34.201	0					6	4	2	0	0	0	0.61433	1	13112	13112		46.766	0	1	39908	+		24042	16413	15661	15722	24380	24380					-0.010823146837083186
LFSPITTKL	9	Unmodified	_LFSPITTKL_					0	0	0			REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.3100891113281	2	510.310418	1018.60628	1.1938	0.0006092	-1.2603	-0.00064313	-0.06649	-3.393E-05	510.3096864140597	41.002	0.33183	41.002	40.804	41.136	0					11	9	2	0	0	0	0.47038	1	16127	16127		35.618	3.6634	1	58345	+		24043	22049	15662	15723	24381	24381					0.09772388142494037
LFSTVQII	8	Unmodified	_LFSTVQII_					0	0	0			REV__NMUR2|p.F224V|1|0.05|ENSG00000132911|chr5:152404444-152404444|A/C|missense_variant	REV__NMUR2|p.F224V|1|0.05|ENSG00000132911|chr5:152404444-152404444|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7762451171875	2	460.776211	919.537869	-0.45727	-0.0002107	0.17432	8.032E-05	-0.28295	-0.00013038	460.7762350800498	37.016	0.89574	37.016	36.778	37.674	0					49	18	3	0	0	0	0.30437	1	14363	14363		82.305	5.5309	1	410930	+		24044	14683	15663	15724	24382	24382					0.07488143562670757
LFTHGGDSF	9	Unmodified	_LFTHGGDSF_					0	0	0			REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.724853515625	2	490.727249	979.439946	-1.294	-0.000635	-2.5268	-0.00124	-3.8208	-0.001875	490.7256507950527	27.692	0.24912	27.692	27.573	27.822	0					13	8	2	0	0	0	0.16524	1	8836	8836		65.803	10.299	1	103570	+		24045	14195	15664	15725	24383	24383					-0.05059665033320471
LFTIARQFL	9	Unmodified	_LFTIARQFL_					0	0	0		ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.8289184570312	2	554.829309	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.642	1	21.642	21.142	22.142	0								0	0	0	0.3245	1	6309	6309		16.473	0.83134	1				24046	23146	15665	15726	24384	24384					0.09454899127990757
LFTIRNHSL	9	Unmodified	_LFTIRNHSL_					0	0	0			REV__RXFP1|p.F645Lfs*2|1|0.16|ENSG00000171509|chr4:158648673-158648673|T/-|frameshift_variant	REV__RXFP1|p.F645Lfs*2|1|0.16|ENSG00000171509|chr4:158648673-158648673|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.5450744628906	3	367.545219	1099.61383	0.47852	0.00017588	-0.67181	-0.00024692	-0.19329	-7.1045E-05	367.54489811341074	21.189	0.41077	21.189	20.947	21.357	0					21	8	3	0	0	0	0.51817	1	7002	7002		23.523	0	1	628580	+		24047	16416	15666	15727	24385	24385					0.06800540462791105
LFTPKLPTF	9	Unmodified	_LFTPKLPTF_					0	0	0			REV__nc|ENSG00000079335|Q9UNH5-4|CDC14A	REV__nc|ENSG00000079335|Q9UNH5-4|CDC14A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.3114013671875	2	532.312961	1062.61137	1.7336	0.00092282	-2.4114	-0.0012836	-0.67777	-0.00036078	532.3118026768193	45.545	0.23027	45.545	45.504	45.734	0					10	8	2	0	0	0	0.3269	1	18251	18251		47.96	5.0953	1	49039	+		24048	20940	15667	15728	24386	24386					0.08256692005102195
LFTPSHDNIDK	11	Unmodified	_LFTPSHDNIDK_					0	0	0			REV__ENSG00000120327|ENST00000239449|PCDHB14	REV__ENSG00000120327|ENST00000239449|PCDHB14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	643.8247680664062	2	643.822409	1285.63027	2.9237	0.0018823	0.22855	0.00014714	3.1523	0.0020295	643.8225835412221	46.212	0.44009	46.212	46.056	46.496	0					43	19	4	0	0	0	0.75295	1	18460	18460		22.58	22.58	1	186680	+		24049	14278	15668	15729	24387	24387					-0.0011242316179504996
LFVFNFVF	8	Unmodified	_LFVFNFVF_					0	0	0		ENSG00000110651|ENST00000263645|CD81	ENSG00000110651|ENST00000263645|CD81	ENSG00000110651|ENST00000263645|CD81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7899780273438	2	516.781296	1031.54804	3.3043	0.0017076	0.6648	0.00034356	3.9691	0.0020511	516.7826183599439	31.553	0.46442	31.553	31.488	31.952	0					14	9	3	0	0	0	0.34071	1	11794	11794		77.944	0	1	429220			24050	2632	15669	15730	24388	24388					0.033527512878890775
LFVFVFSVW	9	Unmodified	_LFVFVFSVW_					0	0	0			REV__nc|ENSG00000146276|P24046-3|GABRR1	REV__nc|ENSG00000146276|P24046-3|GABRR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.880859375	3	381.879428	1142.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.219	1	17.219	16.719	17.719	0								0	0	0	0.3304	1	4065	4065		29.15	10.887	1		+		24051	13985	15670	15731	24389	24389					0.05084995867764519
LFVPNILAR	9	Unmodified	_LFVPNILAR_					0	0	0		ENDOG|p.A286V|1|0.42|ENSG00000167136|chr9:128822573-128822573|C/T|missense_variant;ENSG00000167136|ENST00000372642|ENDOG	ENDOG|p.A286V|1|0.42|ENSG00000167136|chr9:128822573-128822573|C/T|missense_variant	ENDOG|p.A286V|1|0.42|ENSG00000167136|chr9:128822573-128822573|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.8259887695312	2	521.824027	1041.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.864	1	19.864	19.364	20.364	0								0	0	0	0.28164	1	6350	6350		38.806	3.1879	1				24052	916	15671	15732	24390	24390					0.11434916473558587
LFVQLSKSK	9	Unmodified	_LFVQLSKSK_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF;ARHGAP5|p.K192Nfs*3|1|0.29|ENSG00000100852|chr14:32091239-32091239|A/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.319091796875	2	525.321317	1048.62808	1.1684	0.0006138	-3.1837	-0.0016725	-2.0153	-0.0010587	525.3188983893135	30.123	0.16707	30.123	30.062	30.229	0					6	4	2	0	0	0	0.48389	1	10223	10223		34.173	0.25091	1	82852			24053	2069	15672	15733	24391	24391					0.1057119289109778
LFWKSCLQ	8	Unmodified	_LFWKSCLQ_					0	0	0			REV__ENST00000424122.5_1_2:74718663-74719302:+|nuORF	REV__ENST00000424122.5_1_2:74718663-74719302:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7667236328125	2	512.767863	1023.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.054	1	32.054	31.554	32.554	0								0	0	0	1.7419	1	10337	10337		28.254	0.17279	1		+		24054	19004	15673	15734	24392	24392					0.010353194050480852
LFWPIPGQ	8	Unmodified	_LFWPIPGQ_					0	0	0			REV__ENSG00000156194|ENST00000286719|PPEF2	REV__ENSG00000156194|ENST00000286719|PPEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.26263427734375	2	479.263271	956.511988	-0.2331	-0.00011172	-1.1058	-0.00052997	-1.3389	-0.00064168	479.26283667197487	32.668	0.37315	32.668	32.492	32.865	0					19	9	3	0	0	0	0.7155	1	12044	12044		31.579	2.4293	1	276590	+		24055	15621	15674	15735	24393	24393					0.031992941110502215
LGAAAAATPLV	11	Unmodified	_LGAAAAATPLV_					0	0	0			REV__nc|ENSG00000139910|P51513-5|NOVA1	REV__nc|ENSG00000139910|P51513-5|NOVA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.7842102050781	2	477.784567	953.554582	-1.4739	-0.00070422	0.97222	0.00046451	-0.50171	-0.00023971	477.78494307855806	32.987	0.58386	32.987	32.683	33.267	0					59	23	3	0	0	0	0.69733	1	10961	10961		27.882	0	1	546310	+		24056	15052	15675	15736	24394	24394					0.07594644448613508
LGAAALLSA	9	Unmodified	_LGAAALLSA_					0	0	0		ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.7394104003906	2	393.739628	785.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.342	1	25.342	24.842	25.842	0								0	0	0	0.10093	1	8982	8982		71.378	11.084	1				24057	6297	15676	15737	24395	24395					0.06339014840034451
LGAAGRPPP	9	Unmodified	_LGAAGRPPP_					0	0	0		ENST00000412483.1_1_1:234349769-234350697:-|nuORF	ENST00000412483.1_1_1:234349769-234350697:-|nuORF	ENST00000412483.1_1_1:234349769-234350697:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	418.24273681640625	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.58	1	20.58	20.08	21.08	0								0	0	0	0.29985	1	5771	5771		35.201	5.3592	1				24058	9317	15677	15738	24396	24396					0.04732952791414391
LGAASVAVV	9	Unmodified	_LGAASVAVV_					0	0	0			REV__ENST00000465519.5_1_3:195925313-195934370:-|nuORF	REV__ENST00000465519.5_1_3:195925313-195934370:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	393.7395935058594	2	393.739628	785.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.044	1	25.044	24.544	25.544	0								0	0	0	0.29985	1	7484	7484		35.201	0	1		+		24059	15942	15678	15739	24397	24397					0.0633901484004582
LGAATPRRT	9	Unmodified	_LGAATPRRT_					0	0	0			REV__CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant	REV__CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.77716064453125	2	471.777608	941.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.646	1	13.646	13.146	14.146	0								0	0	0	0.10121	1	3369	3369		71.296	0	1		+		24060	12405	15679	15740	24398	24398					0.06755411740175532
LGAAVAQLP	9	Unmodified	_LGAAVAQLP_					0	0	0			REV__ENST00000489822.5_1_10:121347751-121356470:-|nuORF	REV__ENST00000489822.5_1_10:121347751-121356470:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.2526550292969	2	420.252903	838.491253	-1.2844	-0.00053977	0.94838	0.00039856	-0.33602	-0.00014121	420.2532608798498	26.879	0.33835	26.879	26.686	27.024	0					19	12	2	0	0	0	0.49003	1	8484	8484		33.516	0	1	44645	+		24061	19705	15680	15741	24399	24399					0.06554703731376321
LGAAWRHGL	9	Unmodified	_LGAAWRHGL_					0	0	0			REV__ENSG00000269743|ENST00000594199|SLC25A53	REV__ENSG00000269743|ENST00000594199|SLC25A53	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.773193359375	2	490.774868	979.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.217	1	41.217	40.717	41.717	0								0	0	0	0.34228	1	16380	16380		26.796	9.4311	1		+		24062	17805	15681	15742	24400	24400					0.04459732948373585
LGACTHGGPVL	11	Unmodified	_LGACTHGGPVL_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7695922851562	2	512.765852	1023.51715	-0.046755	-2.3974E-05	2.8821	0.0014778	2.8353	0.0014539	512.7689646798125	34.999	0.24154	34.999	34.831	35.072	0					18	10	3	0	0	0	0.63135	1	11434	11434		34.173	7.4796	1	120090			24063	6904	15682	15743	24401	24401					0.006332299113523732
LGAERLRQ	8	Unmodified	_LGAERLRQ_					0	0	0			REV__ENSG00000146540|ENST00000397098|C7orf50	REV__ENSG00000146540|ENST00000397098|C7orf50	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.777587890625	2	471.777608	941.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.427	1	13.427	12.927	13.927	0								0	0	0	1.7419	1	2765	2765		55.504	3.205	1		+		24064	15317	15683	15744	24402	24402					0.06755411740186901
LGAGGGRAGPR	11	Unmodified	_LGAGGGRAGPR_					0	0	0		ENST00000260247.9_1_11:102962671-102962878:-|nuORF	ENST00000260247.9_1_11:102962671-102962878:-|nuORF	ENST00000260247.9_1_11:102962671-102962878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	323.5185241699219	3	323.517663	967.531161	2.9945	0.00096877	-0.12138	-3.9268E-05	2.8731	0.0009295	323.517626341602	15.967	0.46837	15.967	15.865	16.333	0					16	9	3	0	0	0	0.69733	1	4313	4313		30.569	2.4874	1	3248300			24065	8286	15684	15745	24403	24403					0.046096434546598175
LGAGGVVL	8	Unmodified	_LGAGGVVL_					0	0	0		ENST00000484563.1_1_1:109968976-109969045:-|nuORF	ENST00000484563.1_1_1:109968976-109969045:-|nuORF	ENST00000484563.1_1_1:109968976-109969045:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.2157287597656	2	343.215789	684.417025	-0.75293	-0.00025842	0.6381	0.00021901	-0.11483	-3.9411E-05	343.2161028990422	30.086	0.26891	30.086	29.984	30.252	0					14	10	2	0	0	0	0.77013	1	9846	9846		24.504	0	1	43987			24066	9997	15685	15746	24404	24404					0.06219360639840943
LGAGLFPAGP	10	Unmodified	_LGAGLFPAGP_					0	0	0			REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2511901855469	2	450.252903	898.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.8	1	29.8	29.3	30.3	0								0	0	0	0.38459	1	9734	9734		35.201	4.6971	1		+		24067	18299	15686	15747	24405	24405					0.037947037313642795
LGAGSAPGPLV	11	Unmodified	_LGAGSAPGPLV_					0	0	0		ENST00000360315.7_1_19:19616542-19616689:+|nuORF	ENST00000360315.7_1_19:19616542-19616689:+|nuORF	ENST00000360315.7_1_19:19616542-19616689:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.76837158203125	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.48	1	20.48	19.98	20.98	0								0	0	0	0.36993	1	5766	5766		42.396	0	1				24068	8863	15687	15748	24406	24406					0.0520207141452147
LGAGSAPGPLV	11	Unmodified	_LGAGSAPGPLV_					0	0	0		ENST00000360315.7_1_19:19616542-19616689:+|nuORF	ENST00000360315.7_1_19:19616542-19616689:+|nuORF	ENST00000360315.7_1_19:19616542-19616689:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7685852050781	2	469.768917	937.523281	0.53129	0.00024959	-1.2591	-0.00059149	-0.72781	-0.0003419	469.7684683727947	20.634	0.51702	20.634	20.226	20.743	0					25	10	3	0	0	0	0.40284	1	6575	6575		51.335	0.14276	1	1013400			24069	8863	15687	15748	24407	24407					0.0520207141452147
LGAGVAGV	8	Unmodified	_LGAGVAGV_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.19378662109375	2	322.192314	642.370075	3.6777	0.0011849	0.47977	0.00015458	4.1575	0.0013395	322.19239059979554	24.384	0.28295	24.384	24.29	24.573	0					21	9	4	0	0	0	0.79462	1	7438	7438		16.705	0	1	1268900			24070	4096	15688	15749	24408	24408					0.034585010887212775
LGAILNNLL	9	Unmodified	_LGAILNNLL_					0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.79437255859375	2	470.794935	939.575317	-0.0038395	-1.8076E-06	-0.41039	-0.00019321	-0.41423	-0.00019502	470.79474434371394	32.339	0.43498	32.339	32.195	32.63	0					53	19	4	0	0	0	0.41354	1	10406	10406		40.573	3.4135	1	1305600			24071	2429	15689	15750	24409	24409					0.10311234828293436
LGAINDGNK	9	Unmodified	_LGAINDGNK_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2397155761719	2	451.240524	900.466495	-0.4997	-0.00022549	-1.3473	-0.00060794	-1.847	-0.00083343	451.23985396552257	30.047	0.16632	30.047	29.961	30.127	0					10	4	3	0	0	0	0.36892	1	10803	10803		44.377	1.981	1	176830			24072	7269	15690	15751	24410	24410					0.012280238579933211
LGALEVDTT	9	Unmodified	_LGALEVDTT_					0	0	0			REV__nc|ENSG00000176986|P53992-2|SEC24C	REV__nc|ENSG00000176986|P53992-2|SEC24C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7422180175781	2	459.742565	917.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.916	1	32.916	32.416	33.416	0								0	0	0	0.16876	1	11498	11498		55.504	0	1		+		24073	16682	15691	15752	24411	24411					0.008540685610341825
LGALFWVL	8	Unmodified	_LGALFWVL_					0	0	0			REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7752685546875	2	459.776014	917.537475	-0.0090807	-4.1751E-06	-1.1399	-0.00052412	-1.149	-0.00052829	459.77548424006403	16.483	0.34439	16.483	16.377	16.722	0					17	10	2	0	0	0	0.63381	1	3908	3908		43.626	0	1	377560	+		24074	19259	15692	15753	24412	24412					0.07540768633475636
LGALLRQL	8	Unmodified	_LGALLRQL_					0	0	0			REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.28955078125	2	442.28982	882.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.669	1	33.669	33.169	34.169	0								0	0	0	1.7419	1	11315	11315		74.517	6.0319	1		+		24075	18474	15693	15754	24413	24413					0.11910671893701874
LGAPDPSPT	9	Unmodified	_LGAPDPSPT_					0	0	0			REV__nc|ENSG00000171763|Q9BVQ7-3|AFG2B	REV__nc|ENSG00000171763|Q9BVQ7-3|AFG2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.7162170410156	2	427.71635	853.418148	0.24875	0.00010639	-0.89484	-0.00038274	-0.6461	-0.00027635	427.71618099974233	24.799	0.15083	24.799	24.719	24.869	0					8	4	2	0	0	0	0.30268	1	7370	7370		50.025	4.0726	1	58540	+		24076	16428	15694	15755	24414	24414					-0.014424697818981258
LGAPGPIGLSG	11	Unmodified	_LGAPGPIGLSG_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4;COL4A4|p.G1230Vfs*58|2|0.28|ENSG00000081052|chr2:227032170-227032170|C/-|frameshift_variant;COL4A4|p.G503Wfs*12|1|0.38|ENSG00000081052|chr2:227088770-227088771|-/G|frameshift_variant;COL4A4|p.P630Qfs*23|1|0.16|ENSG00000081052|chr2:227077997-227077997|C/-|frameshift_variant;COL4A4|p.P502Lfs*151|1|0.38|ENSG00000081052|chr2:227088771-227088771|G/-|frameshift_variant	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.76849365234375	2	469.768917	937.523281	-1.2257	-0.00057581	0.64957	0.00030515	-0.57616	-0.00027066	469.7691876854583	20.442	0.37396	20.442	20.189	20.563	0					16	12	2	0	0	0	0.63135	1	5686	5686		34.173	1.3601	1	138270			24077	1653	15695	15756	24415	24415					0.0520207141452147
LGAPIIPHT	9	Unmodified	_LGAPIIPHT_					0	0	0		POT1|p.R117H|1|0.1|ENSG00000128513|chr7:124863546-124863546|C/T|missense_variant	POT1|p.R117H|1|0.1|ENSG00000128513|chr7:124863546-124863546|C/T|missense_variant	POT1|p.R117H|1|0.1|ENSG00000128513|chr7:124863546-124863546|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7752685546875	2	459.774003	917.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.441	1	16.441	15.941	16.941	0								0	0	0	0.24438	1	3943	3943		44.531	5.7249	1				24078	11951	15696	15757	24416	24416					0.07138679139745818
LGAPLQLK	8	Unmodified	_LGAPLQLK_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.2711181640625	2	420.271096	838.527639	-0.31077	-0.00013061	0.58299	0.00024501	0.27222	0.00011441	420.27125144492226	30.351	0.21242	30.351	30.245	30.458	0					7	4	2	0	0	0	0.6282	1	11238	11238		44.531	3.9584	1	243620	+		24079	15388	15697	15758	24417	24417					0.10191580628088559
LGAPRDAAPS	10	Unmodified	_LGAPRDAAPS_					0	0	0		ENSG00000197245|ENST00000374268|FAM110D	ENSG00000197245|ENST00000374268|FAM110D	ENSG00000197245|ENST00000374268|FAM110D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7535095214844	2	477.753798	953.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.472	1	15.472	14.972	15.972	0								0	0	0	0.40063	1	4237	4237		30.318	2.0634	1				24080	7439	15698	15759	24418	24418					0.014437127493124535
LGAPVHLEI	9	Unmodified	_LGAPVHLEI_					0	0	0		ENST00000299413.6_1_11:35832336-35832669:+|nuORF	ENST00000299413.6_1_11:35832336-35832669:+|nuORF	ENST00000299413.6_1_11:35832336-35832669:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7789611816406	2	474.779285	947.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.97	1	38.97	38.47	39.47	0								0	0	0	0.13662	1	15309	15309		62.978	0	1				24081	8476	15699	15760	24419	24419					0.06814661794169297
LGAQAPPPAP	10	Unmodified	_LGAQAPPPAP_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7572021484375	2	459.75581	917.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.227	1	25.227	24.727	25.727	0								0	0	0	0.37816	1	7821	7821		37.159	3.6435	1		+		24082	21087	15700	15761	24420	24420					0.03501802243022212
LGAQNQTL	8	Unmodified	_LGAQNQTL_					0	0	0		CON__P28800	CON__P28800	CON__P28800	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.72979736328125	2	422.729792	843.445031	0.37432	0.00015824	-0.48792	-0.00020626	-0.1136	-4.8021E-05	422.72956288222514	21.32	0.21322	21.32	21.209	21.422	0					10	6	2	0	0	0	0.66372	1	5851	5851		38.806	1.647	1	165060		+	24083	642	15701	15762	24421	24421					0.017046388292897063
LGASFGRR	8	Unmodified	_LGASFGRR_					0	0	0			REV__ENSG00000112273|ENST00000510882|HDGFL1	REV__ENSG00000112273|ENST00000510882|HDGFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2451477050781	2	432.245944	862.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.972	1	19.972	19.472	20.472	0								0	0	0	1.7419	1	6119	6119		31.955	0	1		+		24084	13996	15702	15763	24422	24422					0.040594710229470365
LGASGGAVIQ	10	Unmodified	_LGASGGAVIQ_					0	0	0			REV__nc|ENSG00000183032|Q9BQT8-2|SLC25A21	REV__nc|ENSG00000183032|Q9BQT8-2|SLC25A21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.74578857421875	2	436.745442	871.476331	-0.64439	-0.00028144	1.0521	0.00045952	0.40775	0.00017809	436.74595423777384	18.967	0.23159	18.967	18.845	19.077	0					7	5	2	0	0	0	0.39566	1	5077	5077		56.721	1.2168	1	86012	+		24085	16908	15703	15764	24423	24423					0.03545211863365694
LGASGKYQ	8	Unmodified	_LGASGKYQ_					0	0	0		IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant;IGSF9B|p.T1083Hfs*72|2|0.42|ENSG00000080854|chr11:133920478-133920479|-/G|frameshift_variant;nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B;IGSF9B|p.E216Rfs*61|1|0.28|ENSG00000080854|chr11:133937409-133937409|C/-|frameshift_variant	IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant	IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.2191467285156	2	412.21906	822.423567	0.57515	0.00023709	-0.56616	-0.00023338	0.0089908	3.7062E-06	412.21884013061907	17.875	0.14728	17.875	17.828	17.975	0					5	3	2	0	0	0	0.68754	1	5133	5133		35.201	1.0282	1	156650			24086	1648	15704	15765	24424	24424					0.005252538005606766
LGASLKDEI	9	Unmodified	_LGASLKDEI_					0	0	0		ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000443417.1_1_9:102879039-102879699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.26617431640625	2	473.266207	944.517862	-0.5793	-0.00027416	0.49163	0.00023267	-0.087669	-4.1491E-05	473.26654171973655	31.675	0.21505	31.675	31.571	31.786	0					6	4	2	0	0	0	0.19605	1	11879	11879		62.107	14.45	1	185470			24087	9597	15705	15766	24425	24425					0.04338347832026557
LGASQRFF	8	Unmodified	_LGASQRFF_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16;nc|ENSG00000130762|Q5VV41-2|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.24932861328125	2	463.248152	924.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.666	1	19.666	19.166	20.166	0								0	0	0	1.7419	1	5975	5975		47.916	1.9434	1				24088	3670	15706	15767	24426	24426					0.01648935445848565
LGASRSRGIL	10	Unmodified	_LGASRSRGIL_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8781433105469	3	343.876969	1028.60908	3.0267	0.0010408	0.46758	0.00016079	3.4942	0.0012016	343.8772720346733	29.034	0.85743	29.034	28.775	29.633	0					40	17	4	0	0	0	0.66185	1	10599	10599		25.126	0	1	1319800			24089	3788	15707	15768	24427	24427					0.09591656320048969
LGASSLQGVMG	11	Unmodified	_LGASSLQGVMG_					0	0	0		ENST00000496692.6_1_1:161551173-161559386:+|nuORF;ENST00000466542.6_1_1:161551173-161559386:+|nuORF;ENST00000485778.1_1_1:161633004-161641486:+|nuORF;ENST00000480308.5_1_1:161633004-161643868:+|nuORF	ENST00000496692.6_1_1:161551173-161559386:+|nuORF	ENST00000496692.6_1_1:161551173-161559386:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.5101318359375	3	340.511187	1018.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.235	1	16.235	15.735	16.735	0								0	0	0	0.44116	1	3854	3854		30.569	2.6866	1				24090	9787	15708	15769	24428	24428					0.003215063288962483
LGATLKLQ	8	Unmodified	_LGATLKLQ_					0	0	0		ENSG00000187609|ENST00000340951|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF;nc|ENSG00000187609|Q8N9H8-4|EXD3	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2688903808594	2	422.268553	842.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.785	1	30.785	30.285	31.285	0								0	0	0	1.7419	1	10525	10525		42.396	1.618	1				24091	7205	15709	15770	24429	24429					0.09499276765461673
LGATVGSLH	9	Unmodified	_LGATVGSLH_					0	0	0			REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.7401123046875	2	427.74016	853.465767	-0.2327	-9.9535E-05	-0.47321	-0.00020241	-0.70591	-0.00030195	427.7400026327481	20.494	0.18438	20.494	20.335	20.52	0					10	6	2	0	0	0	0.35045	1	5496	5496		45.952	0	1	61206	+		24092	19410	15710	15771	24430	24430					0.03317229208948902
LGAVITNEQ	9	Unmodified	_LGAVITNEQ_					0	0	0		tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1	tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1	tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7554626464844	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.227	1	18.227	17.727	18.727	0								0	0	0	0.28164	1	4716	4716		38.806	1.647	1				24093	22997	15711	15772	24431	24431					0.023451771722307058
LGCGSSNS	8	Unmodified	_LGCGSSNS_					0	0	0			REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	REV__ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.6490478515625	2	362.650153	723.285753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.686	1	49.686	49.186	50.186	0								0	0	0	1.7419	1	16354	16354		12.959	0.75233	1		+		24094	12024	15712	15773	24432	24432					-0.08695817790351157
LGCILELASL	10	Unmodified	_LGCILELASL_					0	0	0		ENST00000588940.5_1_18:44662751-44676543:-|nuORF	ENST00000588940.5_1_18:44662751-44676543:-|nuORF	ENST00000588940.5_1_18:44662751-44676543:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2955322265625	2	516.293911	1030.57327	0.86692	0.00044759	3.4383	0.0017751	4.3052	0.0022227	516.2956801758265	20.738	0.16863	20.738	20.629	20.798	0					5	3	2	0	0	0	0.37692	1	6758	6758		58.782	9.3404	1	329740			24095	10930	15713	15774	24433	24433					0.05920438028147146
LGCKILTEI	9	Unmodified	_LGCKILTEI_					0	0	0		ENST00000512560.5_1_5:79278531-79278720:-|nuORF	ENST00000512560.5_1_5:79278531-79278720:-|nuORF	ENST00000512560.5_1_5:79278531-79278720:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2884521484375	2	495.288628	988.562703	-0.76058	-0.00037671	0.84007	0.00041608	0.079493	3.9372E-05	495.28968210437563	16.816	0.25059	16.816	16.696	16.947	0					9	5	3	0	0	0	0.54081	1	4883	4883		27.882	0	1	470090			24096	10240	15714	15775	24434	24434					0.06796455373716981
LGCLLRAKGT	10	Unmodified	_LGCLLRAKGT_					0	0	0		nc|ENSG00000130821|P48029-2|SLC6A8;ENST00000485324.1_1_X:152959908-152960666:+|nuORF;nc|ENSG00000130821|P48029-3|SLC6A8;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF	nc|ENSG00000130821|P48029-2|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF	ENST00000431994.5_1_16:32890029-32891910:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.53802490234375	3	344.539188	1030.59573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.123	1	24.123	23.623	24.623	0								0	0	0	0.4201	1	7340	7340		18.262	0	1				24097	11521;9505	15715	15776	24435	24435					0.08166082216439463
LGCNPSLP	8	Carbamidomethyl (C)	_LGC(Carbamidomethyl (C))NPSLP_	LGC(1)NPSLP		LGC(56)NPSLP		0	1	0		ENSG00000095951|ENST00000379388|HIVEP1;HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2127990722656	2	429.212921	856.411288	-0.51911	-0.00022281	0.27374	0.00011749	-0.24537	-0.00010532	429.21308975521265	36.575	0.15301	36.575	36.472	36.625	0					6	4	2	0	0	0	0.54629	1	14264	14264		55.504	11.387	1	86860			24098	1911	15716	15777	24436	24436	78				-0.022661059341317014
LGCVLLKQV	9	Unmodified	_LGCVLLKQV_					0	0	0			REV__ENSG00000143797|ENST00000305997|MBOAT2	REV__ENSG00000143797|ENST00000305997|MBOAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.8697509765625	3	324.868534	971.583773	2.9966	0.00097349	0.67818	0.00022032	3.6748	0.0011938	324.86873960924305	19.22	0.36427	19.22	19.112	19.476	0					13	7	3	0	0	0	0.35021	1	5915	5915		45.972	3.108	1	848730	+		24099	15206	15717	15778	24437	24437					0.09684465473253567
LGDACQELLE	10	Unmodified	_LGDACQELLE_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.75927734375	2	545.757889	1089.50123	1.1949	0.00065213	1.5736	0.00085882	2.7685	0.001511	545.7587798258805	18.963	0.1349	18.963	18.896	19.031	0					6	4	2	0	0	0	0.55603	1	4822	4822		39.253	4.1008	1	79494	+		24100	13392	15718	15779	24438	24438					-0.03994521116192118
LGDDEASA	8	Unmodified	_LGDDEASA_					0	0	0		ENSG00000163914|ENST00000296271|RHO	ENSG00000163914|ENST00000296271|RHO	ENSG00000163914|ENST00000296271|RHO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.16497802734375	2	389.16669	776.318828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.947	1	46.947	46.447	47.447	0								0	0	0	1.7419	1	17987	17987		26.796	0	1				24101	5625	15719	15780	24439	24439					-0.07827912466655107
LGDGEVFFL	9	Unmodified	_LGDGEVFFL_					0	0	0		ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7582092285156	2	498.755475	995.496398	3.3782	0.0016849	1.3401	0.00066839	4.7183	0.0023533	498.7562835882357	31.14	0.14164	31.14	31.039	31.181	0					7	5	2	0	0	0	0.57706	1	10302	10302		24.203	0	1	39427			24102	198	15720	15781	24440	24440					-0.001530371966509847
LGDQTNEPEPS	11	Unmodified	_LGDQTNEPEPS_					0	0	0			REV__PITPNM2|p.D382N|1|0.07|ENSG00000090975|chr12:123001063-123001063|C/T|missense_variant	REV__PITPNM2|p.D382N|1|0.07|ENSG00000090975|chr12:123001063-123001063|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.7658081054688	2	593.764757	1185.51496	0.28986	0.00017211	0.3618	0.00021482	0.65165	0.00038693	593.7649768603826	37.098	0.11591	37.098	37.026	37.142	0					8	3	3	0	0	0	0.40479	1	14033	14033		51.193	10.415	1	96647	+		24103	21376	15721	15782	24441	24441					-0.07037572083436316
LGDRPFEWR	9	Unmodified	_LGDRPFEWR_					0	0	0			REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF	REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.5365295410156	3	392.536724	1174.58834	-0.67099	-0.00026339	-0.45946	-0.00018035	-1.1304	-0.00044374	392.5367535712775	36.112	0.56565	36.112	35.979	36.545	0					15	11	2	0	0	0	0.41958	1	14003	14003		40.058	4.5625	1	192900	+		24104	14766	15722	15783	24442	24442					0.008030659403630125
LGEETHEM	8	Unmodified	_LGEETHEM_					0	0	0			REV__ENST00000585812.5_1_17:59431721-59456358:+|nuORF;REV__nc|ENSG00000141376|Q9H6U6-6|BCAS3	REV__ENST00000585812.5_1_17:59431721-59456358:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.76129150390625	2	473.20275	944.390947	-0.66375	-0.00031409	3.5763	0.0016923	2.9126	0.0013782	473.20462737676894	14.807	0.11597	14.807	14.714	14.83	0					4	2	2	0	0	0	0.75243	1	3919	3919		26.796	1.3459	1	68390	+		24105	20474;15111	15723	15784	24443	24443					-0.08347321384587758
LGEETPRRN	9	Unmodified	_LGEETPRRN_					0	0	0		ENST00000536687.1_1_11:61129481-61129535:-|nuORF	ENST00000536687.1_1_11:61129481-61129535:-|nuORF	ENST00000536687.1_1_11:61129481-61129535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.27880859375	2	536.280712	1070.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.943	1	21.943	21.443	22.443	0								0	0	0	0.19749	1	6126	6126		51.335	10.557	1				24106	10492	15724	15785	24444	24444					0.014418851810660271
LGEFNWLIKIG	11	Unmodified	_LGEFNWLIKIG_					0	0	0		ENST00000537568.1_1_12:16747235-16762728:-|nuORF	ENST00000537568.1_1_12:16747235-16762728:-|nuORF	ENST00000537568.1_1_12:16747235-16762728:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.57965087890625	3	430.579929	1288.71796	-0.45366	-0.00019534	-0.46957	-0.00020219	-0.92323	-0.00039752	430.57975963185993	35.492	0.22132	35.492	35.381	35.603	0					6	4	2	0	0	0	0.72624	1	13721	13721		25.126	0	1	81129			24107	10504	15725	15786	24445	24445					0.08514822499660113
LGEGDVHSM	9	Unmodified	_LGEGDVHSM_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.71026611328125	2	472.710742	943.406931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.638	1	25.638	25.138	26.138	0								0	0	0	0.22106	1	9003	9003		47.916	3.7988	1				24108	4938	15726	15787	24446	24446					-0.0670361514768274
LGEGERAE	8	Unmodified	_LGEGERAE_					0	0	0		nc|ENSG00000196220|O43295-3|SRGAP3;SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant;nc|ENSG00000196220|O43295-2|SRGAP3;ENSG00000196220|ENST00000383836|SRGAP3;ENST00000485983.6_1_3:9079745-9122942:-|nuORF	nc|ENSG00000196220|O43295-3|SRGAP3	nc|ENSG00000196220|O43295-3|SRGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7090148925781	2	430.709057	859.40356	0.78084	0.00033632	-0.934	-0.00040228	-0.15316	-6.5965E-05	430.70866457642927	24.905	0.37641	24.905	24.698	25.074	0					20	9	3	0	0	0	0.72381	1	8510	8510		30.504	1.3541	1	433850			24109	7341	15727	15788	24447	24447					-0.031765419300541
LGELKSTL	8	Unmodified	_LGELKSTL_					0	0	0			REV__ENST00000290524.8_2_1:151316737-151317222:-|nuORF	REV__ENST00000290524.8_2_1:151316737-151317222:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7579650878906	2	430.758018	859.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.929	1	42.929	42.429	43.429	0								0	0	0	1.7419	1	17160	17160		64.207	0.901	1		+		24110	18154	15728	15789	24448	24448					0.06611266665947824
LGEVFNLLG	9	Unmodified	_LGEVFNLLG_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|231|3|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|231|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.26898193359375	2	481.271293	960.528032	-0.6285	-0.00030248	-3.2987	-0.0015876	-3.9272	-0.00189	481.2694684085534	13.533	0.20597	13.533	13.481	13.687	0					9	4	3	0	0	0	0.043797	1	3172	3172		97.473	3.4663	1	712360	+		24111	20822	15729	15790	24449	24449					0.04618955557282334
LGEVQVEPM	9	Unmodified	_LGEVQVEPM_					0	0	0			REV__ENSG00000123415|ENST00000682136|SMUG1	REV__ENSG00000123415|ENST00000682136|SMUG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3211364746094	2	501.252243	1000.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.444	1	18.444	17.944	18.944	0								0	0	0	0.072369	1	5523	5523		79.713	2.866	1		+		24112	14361	15730	15791	24450	24450					-0.010292984196894395
LGFAFLRVLY	10	Unmodified	_LGFAFLRVLY_					0	0	0		STEAP4|p.H304R|1|0.54|ENSG00000127954|chr7:88282714-88282714|T/C|missense_variant	STEAP4|p.H304R|1|0.54|ENSG00000127954|chr7:88282714-88282714|T/C|missense_variant	STEAP4|p.H304R|1|0.54|ENSG00000127954|chr7:88282714-88282714|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.2403869628906	3	400.237615	1197.69102	3.1517	0.0012614	2.1909	0.00087689	5.3426	0.0021383	400.2384036347131	33.965	0.72932	33.965	33.793	34.522	0					39	15	4	0	0	0	0.6796	1	12915	12915		24.519	0.99649	1	708010			24113	22495	15731	15792	24451	24451					0.10007758679148537
LGFDALKVA	9	Unmodified	_LGFDALKVA_					0	0	0			REV__nc|ENSG00000145349|Q13557-4|CAMK2D	REV__nc|ENSG00000145349|Q13557-4|CAMK2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2735900878906	2	467.273835	932.533118	0.36409	0.00017013	-2.0767	-0.00097038	-1.7126	-0.00080025	467.27335155984946	35.106	0.82125	35.106	34.573	35.394	0					62	21	4	0	0	0	0.32741	1	12994	12994		47.916	0	1	1257200	+		24114	15267	15732	15793	24452	24452					0.06415259419884478
LGFEPRGTAI	10	Unmodified	_LGFEPRGTAI_					0	0	0		DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant;DISP1|p.S1299Ffs*6|1|0.05|ENSG00000154309|chr1:223005292-223005293|-/TTTG|frameshift_variant;DISP1|p.E1470Gfs*5|1|0.31|ENSG00000154309|chr1:223005800-223005801|-/G|frameshift_variant;ENSG00000154309|ENST00000675850|DISP1	DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant	DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.1988525390625	3	354.197708	1059.57129	3.0458	0.0010788	-0.3908	-0.00013842	2.655	0.00094041	354.1977263960441	17.335	0.30566	17.335	17.107	17.413	0					17	6	4	0	0	0	0.62235	1	4963	4963		36.318	5.9999	1	878860			24115	796	15733	15794	24453	24453					0.04389145334562272
LGFFIMCVY	9	Unmodified	_LGFFIMCVY_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2;TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant;TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7691650390625	2	546.766474	1091.5184	1.1313	0.00061854	4.33	0.0023675	5.4613	0.0029861	546.7682494025402	29.017	0.12697	29.017	28.967	29.094	0					5	3	2	0	0	0	0.52436	1	9721	9721		29.842	0.69198	1	60424			24116	4083	15734	15795	24454	24454					-0.023702720441178826
LGFFYGKK	8	Unmodified	_LGFFYGKK_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2705993652344	2	480.271096	958.527639	-0.50103	-0.00024063	-1.0209	-0.00049032	-1.522	-0.00073095	480.2706652516883	14.446	0.19044	14.446	14.348	14.539	0					10	4	3	0	0	0	0.49887	1	3755	3755		60.294	8.9585	1	299310			24117	1136	15735	15796	24455	24455					0.04671580628087213
LGFGISVLQ	9	Unmodified	_LGFGISVLQ_					0	0	0		ENST00000382159.7_1_19:2520718-2646275:-|nuORF	ENST00000382159.7_1_19:2520718-2646275:-|nuORF	ENST00000382159.7_1_19:2520718-2646275:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2733154296875	2	467.273835	932.533118	-1.0161	-0.00047481	-0.80019	-0.00037391	-1.8163	-0.00084872	467.2738960496976	34.924	0.65812	34.924	34.473	35.131	0					76	29	3	0	0	0	0.48389	1	11687	11687		34.173	2.2177	1	267120			24118	9121	15736	15797	24456	24456					0.06415259419895847
LGFLWPLLT	9	Unmodified	_LGFLWPLLT_					0	0	0		ENSG00000197405|ENST00000355085|C5AR1	ENSG00000197405|ENST00000355085|C5AR1	ENSG00000197405|ENST00000355085|C5AR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.315673828125	2	530.315503	1058.61645	3.4388	0.0018237	-3.5924	-0.0019051	-0.15364	-8.1478E-05	530.3133684645335	43.009	0.20065	43.009	42.946	43.146	0					6	5	2	0	0	0	0.14734	1	17210	17210		68.485	3.0193	1	104970			24119	7455	15737	15798	24457	24457					0.08948995867763188
LGFPNLWGG	9	Unmodified	_LGFPNLWGG_					0	0	0		ENST00000473270.1_1_9:33016115-33025020:-|nuORF	ENST00000473270.1_1_9:33016115-33025020:-|nuORF	ENST00000473270.1_1_9:33016115-33025020:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.75006103515625	2	480.750527	959.486502	0.51745	0.00024876	-2.1503	-0.0010338	-1.6328	-0.00078499	480.7497084825293	19.409	0.41476	19.409	19.169	19.584	0					17	9	3	0	0	0	0.30268	1	5863	5863		50.025	11.003	1	209530			24120	9874	15738	15799	24458	24458					0.0051381958861611565
LGFQPIID	8	Unmodified	_LGFQPIID_					0	0	0			REV__HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|14|3|sense	REV__HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|14|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7539367675781	2	451.752736	901.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.507	1	44.507	44.007	45.007	0								0	0	0	1.7419	1	17320	17320		37.159	5.2042	1		+		24121	20743	15739	15800	24459	24459					0.03623284011530359
LGFSALLNV	9	Unmodified	_LGFSALLNV_					0	0	0		ENST00000264193.2_1_3:98298778-98298835:-|nuORF	ENST00000264193.2_1_3:98298778-98298835:-|nuORF	ENST00000264193.2_1_3:98298778-98298835:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2736511230469	2	467.273835	932.533118	0.046686	2.1815E-05	-0.94882	-0.00044336	-0.90214	-0.00042155	467.2736449679653	34.804	0.63654	34.804	34.443	35.079	0					61	27	3	0	0	0	0.32741	1	11436	11436		47.916	0	1	189930			24122	8326	15740	15801	24460	24460					0.06415259419895847
LGFSAMKLC	9	Unmodified	_LGFSAMKLC_					0	0	0			REV__ENST00000430998.6_1_10:4699836-4701809:-|nuORF	REV__ENST00000430998.6_1_10:4699836-4701809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2478942871094	2	485.248449	968.482345	-1.2361	-0.00059981	-0.70252	-0.0003409	-1.9386	-0.00094071	485.2482699443608	27.825	0.20193	27.825	27.706	27.908	0					10	7	2	0	0	0	0.51817	1	8915	8915		30.504	0.6621	1	76768	+		24123	19163	15741	15802	24461	24461					-0.003157292209721163
LGFSFSRED	9	Unmodified	_LGFSFSRED_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;PTPN13|p.K1535Sfs*16|1|0.38|ENSG00000163629|chr4:86769879-86769879|A/-|frameshift_variant	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2490234375	2	529.251089	1056.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.608	1	17.608	17.108	18.108	0								0	0	0	0.34845	1	4232	4232		25.574	1.3713	1				24124	5584	15742	15803	24462	24462					-0.038360108331289666
LGFSSLGEIQL	11	Unmodified	_LGFSSLGEIQL_					0	0	0		ENSG00000198965|ENST00000641067|OR10R2;nc|ENSG00000198965|Q8NGX6|OR10R2	ENSG00000198965|ENST00000641067|OR10R2	ENSG00000198965|ENST00000641067|OR10R2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.54876708984375	3	388.548406	1162.62339	0.51865	0.00020152	-1.0999	-0.00042738	-0.58129	-0.00022586	388.5477486041298	18.413	0.36541	18.413	18.353	18.719	0					14	7	2	0	0	0	0.46959	1	5519	5519		46.457	3.5925	1	788890			24125	7648	15743	15804	24463	24463					0.048582639576807196
LGFTQSQIDE	10	Unmodified	_LGFTQSQIDE_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.2763671875	2	569.274761	1136.53497	0.10613	6.0416E-05	1.8044	0.0010272	1.9105	0.0010876	569.2762186612504	26.281	0.17298	26.281	26.21	26.383	0					10	5	3	0	0	0	0.31894	1	8250	8250		62.107	0	1	196080			24126	4157	15744	15805	24464	24464					-0.027837763527941206
LGFVALWHKK	10	Unmodified	_LGFVALWHKK_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.2399597167969	3	400.241359	1197.70225	-2.2493	-0.00090025	-1.1755	-0.00047047	-3.4247	-0.0013707	400.24070629043746	33.842	0.49821	33.842	33.597	34.095	0					18	14	2	0	0	0	0.6796	1	11930	11930		24.519	3.682	1	120230	+		24127	14152	15745	15806	24465	24465					0.11130580773237853
LGGARERRSE	10	Unmodified	_LGGARERRSE_					0	0	0			REV__ENST00000588238.1_1_19:4445497-4445788:-|nuORF	REV__ENST00000588238.1_1_19:4445497-4445788:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.8065795898438	2	565.804885	1129.59522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.539	1	17.539	17.039	18.039	0								0	0	0	0.4201	1	4413	4413		14.137	0	1		+		24128	20502	15746	15807	24466	24466					0.03560378820952792
LGGDGLLG	8	Unmodified	_LGGDGLLG_					0	0	0			REV__nc|ENSG00000186191|P59827-2|BPIFB4	REV__nc|ENSG00000186191|P59827-2|BPIFB4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.1957702636719	2	351.195054	700.375555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.263	1	24.263	23.763	24.763	0								0	0	0	1.7419	1	8144	8144		15.636	0	1		+		24129	17071	15747	15808	24467	24467					0.013381798805312428
LGGGAERSIQ	10	Unmodified	_LGGGAERSIQ_					0	0	0			REV__GRM6|p.V243Gfs*40|1|0.4|ENSG00000113262|chr5:178991553-178991554|-/C|frameshift_variant	REV__GRM6|p.V243Gfs*40|1|0.4|ENSG00000113262|chr5:178991553-178991554|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2657165527344	2	494.26453	986.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.191	1	38.191	37.691	38.691	0								0	0	0	0.29806	1	13663	13663		51.193	1.7511	1		+		24130	20707	15748	15809	24468	24468					0.020710977780595385
LGGGCWRIFQF	11	Unmodified	_LGGGCWRIFQF_					0	0	0		ENST00000233809.8_2_2:217528899-217528932:+|nuORF	ENST00000233809.8_2_2:217528899-217528932:+|nuORF	ENST00000233809.8_2_2:217528899-217528932:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.21673583984375	3	428.549976	1282.6281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.839	1	17.839	17.339	18.339	0								0	0	0	0.45674	1	5369	5369		20.03	0	1				24131	8206	15749	15810	24469	24469					-0.0019113038058549137
LGGGGRLA	8	Unmodified	_LGGGGRLA_					0	0	0		NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.7087097167969	2	350.708663	699.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.855	1	42.855	42.355	43.355	0								0	0	0	1.7419	1	17127	17127		14.664	0	1				24132	4830	15750	15811	24470	24470					0.04104708211571051
LGGGHAYCRNP	11	Unmodified	_LGGGHAYCRNP_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.7711791992188	2	572.769457	1143.52436	2.0228	0.0011586	0.80814	0.00046288	2.831	0.0016215	572.7699246816442	39.746	0.51955	39.746	39.627	40.146	0					51	18	4	0	0	0	0.7098	1	15607	15607		26.693	26.693	1	1223300			24133	6146	15751	15812	24471	24471					-0.041660374882212636
LGGGQYQSRS	10	Unmodified	_LGGGQYQSRS_					0	0	0			REV__DMRTB1|p.P297Rfs*13|3|0.27|ENSG00000143006|chr1:53464771-53464771|C/-|frameshift_variant	REV__DMRTB1|p.P297Rfs*13|3|0.27|ENSG00000143006|chr1:53464771-53464771|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7606811523438	2	526.759612	1051.50467	1.2157	0.00064038	1.3973	0.00073602	2.613	0.0013764	526.7602683635869	21.295	0.66651	21.295	20.876	21.542	0					28	15	3	0	0	0	0.61187	1	5995	5995		32.812	0.85756	1	246490	+		24134	12719	15752	15813	24472	24472					-0.019020902273268803
LGGGTQLV	8	Unmodified	_LGGGTQLV_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.7174987792969	2	372.716153	743.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.279	1	36.279	35.779	36.779	0								0	0	0	1.7419	1	12292	12292		23.037	0	1		+		24135	19252	15753	15814	24473	24473					0.035781552889034174
LGGIPNEKY	9	Unmodified	_LGGIPNEKY_					0	0	0		ENST00000467739.1_1_19:38837137-38839675:+|nuORF;CATSPERG|p.P884Qfs*18|1|0.48|ENSG00000099338|chr19:38367188-38367188|C/-|frameshift_variant;ENSG00000099338|ENST00000409235|CATSPERG	ENST00000467739.1_1_19:38837137-38839675:+|nuORF	ENST00000467739.1_1_19:38837137-38839675:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.76641845703125	2	495.766374	989.518196	0.73328	0.00036354	-0.64315	-0.00031885	0.090133	4.4685E-05	495.7659388689409	29.409	0.29555	29.409	29.245	29.541	0					17	7	4	0	0	0	0.33044	1	10494	10494		47.657	3.5405	1	423040			24136	385	15754	15815	24474	24474					0.023017675518985925
LGGITSPAEI	10	Unmodified	_LGGITSPAEI_					0	0	0		POP1|p.T752Lfs*12|3|0.32|ENSG00000104356|chr8:98156240-98156240|A/-|frameshift_variant;ENSG00000104356|ENST00000401707|POP1	POP1|p.T752Lfs*12|3|0.32|ENSG00000104356|chr8:98156240-98156240|A/-|frameshift_variant	POP1|p.T752Lfs*12|3|0.32|ENSG00000104356|chr8:98156240-98156240|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.265869140625	2	479.266207	956.517862	0.90346	0.000433	-1.7248	-0.00082665	-0.82136	-0.00039365	479.2655150555539	25.004	0.45936	25.004	24.805	25.264	0					16	9	3	0	0	0	0.30737	1	8712	8712		66.429	6.311	1	1134700			24137	2279	15755	15816	24475	24475					0.03786347832033243
LGGKSHPSI	9	Unmodified	_LGGKSHPSI_					0	0	0			REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF	REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.25299072265625	2	448.253434	894.492316	0.61627	0.00027625	0.19947	8.9414E-05	0.81574	0.00036566	448.25332057286965	17.402	0.28695	17.402	17.224	17.511	0					10	7	2	0	0	0	0.30951	1	4873	4873		49.442	1.5259	1	132930	+		24138	19255	15756	15817	24476	24476					0.04084918100284085
LGGKTILPQ	9	Unmodified	_LGGKTILPQ_					0	0	0			REV__sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	REV__sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.786865234375	2	463.78711	925.559667	-0.14263	-6.6149E-05	-0.50005	-0.00023191	-0.64267	-0.00029806	463.7868639316603	29.876	0.16561	29.876	29.767	29.933	0					5	3	2	0	0	0	0.36892	1	11120	11120		44.377	1.5129	1	141760	+		24139	21590	15757	15818	24477	24477					0.09390948311227021
LGGLGKLAAE	10	Unmodified	_LGGLGKLAAE_					0	0	0		ENSG00000276430|ENST00000617224|FAM25C;ENSG00000189090|ENST00000452267|FAM25G;ENSG00000188100|ENST00000343959|FAM25A	ENSG00000276430|ENST00000617224|FAM25C	ENSG00000276430|ENST00000617224|FAM25C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7764587402344	2	464.776742	927.538931	-0.68793	-0.00031974	0.1955	9.0863E-05	-0.49243	-0.00022887	464.7768221108616	27.123	0.29779	27.123	27.037	27.335	0					25	7	5	0	0	0	0.47859	1	9426	9426		47.657	3.5405	1	3211100			24140	7235	15758	15819	24478	24478					0.07226357931551775
LGGNAVVLL	9	Unmodified	_LGGNAVVLL_					0	0	0			REV__OR4A47|p.A204T|1|0.07|ENSG00000237388|chr11:48489402-48489402|G/A|missense_variant	REV__OR4A47|p.A204T|1|0.07|ENSG00000237388|chr11:48489402-48489402|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.2688293457031	2	428.268553	854.522553	-0.41754	-0.00017882	0.84407	0.00036149	0.42654	0.00018267	428.2691615379413	33.15	0.24668	33.15	33.019	33.266	0					7	5	2	0	0	0	0.35045	1	12568	12568		45.952	1.4209	1	88742	+		24141	17668	15759	15820	24479	24479					0.08947276765479728
LGGRQTIKEI	10	Unmodified	_LGGRQTIKEI_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.2237854003906	3	372.224146	1113.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.203	1	21.203	20.703	21.703	0								0	0	0	0.3598	1	5804	5804		41.427	13.345	1		+		24142	17515	15760	15821	24480	24480					0.09832792288693781
LGGSSLTSLP	10	Unmodified	_LGGSSLTSLP_					0	0	0			REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2579650878906	2	466.258382	930.502212	0.43973	0.00020503	-0.94695	-0.00044152	-0.50722	-0.0002365	466.2578342275412	26.988	0.33445	26.988	26.886	27.221	0					19	8	3	0	0	0	0.22198	1	9381	9381		76.774	2.5191	1	457640	+		24143	21649	15761	15822	24481	24481					0.034180613149942474
LGGSSLTSLP	10	Unmodified	_LGGSSLTSLP_					0	0	0			REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.25689697265625	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.724	1	26.724	26.224	27.224	0								0	0	0	0.26105	1	8436	8436		56.721	5.3856	1		+		24144	21649	15761	15822	24482	24482					0.034180613149942474
LGGSSLTSLP	10	Unmodified	_LGGSSLTSLP_					0	0	0			REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2575378417969	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.857	1	26.857	26.357	27.357	0								0	0	0	0.30913	1	8710	8710		49.442	10.189	1		+		24145	21649	15761	15822	24483	24483					0.034180613149942474
LGGSSLTSLP	10	Unmodified	_LGGSSLTSLP_					0	0	0			REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	REV__TMEM129|p.P123Hfs*42|1|0.1|ENSG00000168936|chr4:1718464-1718464|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2579650878906	2	466.258382	930.502212	0.65617	0.00030594	-1.1608	-0.00054122	-0.50461	-0.00023528	466.2574255420104	26.94	0.36779	26.94	26.836	27.204	0					18	7	3	0	0	0	0.079553	1	9595	9595		99.375	22.057	1	501030	+		24146	21649	15761	15822	24484	24484					0.034180613149942474
LGGTAGAVVL	10	Unmodified	_LGGTAGAVVL_					0	0	0			REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant	REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.25811767578125	2	429.258185	856.501818	0.20933	8.9858E-05	0.14507	6.2273E-05	0.3544	0.00015213	429.2583117150725	26.982	0.16774	26.982	26.908	27.076	0					8	5	2	0	0	0	0.14393	1	8260	8260		87.754	0	1	116410	+		24147	20672	15762	15823	24485	24485					0.06782686385793113
LGGTAGAVVL	10	Unmodified	_LGGTAGAVVL_					0	0	0			REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant	REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2579040527344	2	429.258185	856.501818	0.8174	0.00035087	-0.98948	-0.00042474	-0.17208	-7.3867E-05	429.2577634833743	27.296	0.30336	27.296	27.169	27.472	0					14	7	3	0	0	0	0.17679	1	9509	9509		82.305	0	1	838140	+		24148	20672	15762	15823	24486	24486					0.06782686385793113
LGGTLRSLE	9	Unmodified	_LGGTLRSLE_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.79815673828125	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.422	1	19.422	18.922	19.922	0								0	0	0	0.14517	1	5271	5271		60.972	4.2509	1		+		24149	14950	15763	15824	24487	24487					0.05461169926184084
LGGWVCVV	8	Carbamidomethyl (C)	_LGGWVC(Carbamidomethyl (C))VV_	LGGWVC(1)VV		LGGWVC(67)VV		0	1	0			REV__ENST00000426335.6_1_11:47186895-47187006:-|nuORF	REV__ENST00000426335.6_1_11:47186895-47187006:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2347106933594	2	445.233656	888.452759	0.18958	8.4409E-05	2.7907	0.0012425	2.9803	0.0013269	445.234714931196	24.365	0.13166	24.365	24.275	24.407	0					6	4	2	0	0	0	0.42924	1	7180	7180		67.327	9.0973	1	77298	+		24150	19113	15764	15825	24488	24488	684				0.004070748252161138
LGGYSLQIS	9	Unmodified	_LGGYSLQIS_					0	0	0			REV__PPARGC1B|p.F972I|1|0.11|ENSG00000155846|chr5:149845857-149845857|T/A|missense_variant	REV__PPARGC1B|p.F972I|1|0.11|ENSG00000155846|chr5:149845857-149845857|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2527770996094	2	469.2531	936.491647	-0.66794	-0.00031343	0.68475	0.00032132	0.016811	7.8886E-06	469.25342893751474	33.61	0.15868	33.61	33.493	33.651	0					7	4	2	0	0	0	0.35021	1	11822	11822		45.972	0	1	60371	+		24151	21403	15765	15826	24489	24489					0.0208607866057946
LGHGMDRV	8	Unmodified	_LGHGMDRV_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7242126464844	2	442.723987	883.433421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.394	1	13.394	12.894	13.894	0								0	0	0	1.7419	1	3251	3251		15.636	3.4294	1				24152	1937	15766	15827	24490	24490					-0.012958814657054063
LGHGRAVRN	9	Unmodified	_LGHGRAVRN_					0	0	0			REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2789306640625	2	490.280849	978.547145	-0.48053	-0.00023559	-2.5153	-0.0012332	-2.9959	-0.0014688	490.27975873496945	12.114	0.21534	12.114	11.999	12.215	0					14	7	3	0	0	0	0.61124	1	2473	2473		17.365	1.7232	1	499240	+		24153	17598	15767	15828	24491	24491					0.05701349691548785
LGHLGLVTPT	10	Unmodified	_LGHLGLVTPT_					0	0	0		ENST00000592279.6_1_19:15751729-15757926:+|nuORF;CYP4F8|p.Y242Ffs*8|1|0.01|ENSG00000186526|chr19:15623153-15623154|-/GTGAAACGGAATAACCAGTTCTTCCGTTTCCCTTGTT|frameshift_variant;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186526|ENST00000612078|CYP4F8	ENST00000592279.6_1_19:15751729-15757926:+|nuORF	ENST00000592279.6_1_19:15751729-15757926:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.708	1	50.708	50.208	51.208	0								0	0	0	0.4201	1	18964	18964		16.007	3.7999	1				24154	731	15768	15829	24492	24492					0.0781033333993264
LGHLGLVTPT	10	Unmodified	_LGHLGLVTPT_					0	0	0		ENST00000592279.6_1_19:15751729-15757926:+|nuORF;CYP4F8|p.Y242Ffs*8|1|0.01|ENSG00000186526|chr19:15623153-15623154|-/GTGAAACGGAATAACCAGTTCTTCCGTTTCCCTTGTT|frameshift_variant;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186526|ENST00000612078|CYP4F8	ENST00000592279.6_1_19:15751729-15757926:+|nuORF	ENST00000592279.6_1_19:15751729-15757926:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.979	1	30.979	30.479	31.479	0								0	0	0	0.40862	1	11531	11531		26.063	0	1				24155	731	15768	15829	24493	24493					0.0781033333993264
LGHQYLVEK	9	Unmodified	_LGHQYLVEK_					0	0	0		tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8694763183594	3	362.869591	1085.58694	0.46135	0.00016741	-0.48917	-0.0001775	-0.027823	-1.0096E-05	362.8694187640969	22.833	0.13662	22.833	22.754	22.89	0					9	4	3	0	0	0	0.30951	1	6519	6519		47.96	11.642	1	134190			24156	23053	15769	15830	24494	24494					0.04757431851612637
LGHQYLVEK	9	Unmodified	_LGHQYLVEK_					0	0	0		tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.8694152832031	3	362.869591	1085.58694	-0.94917	-0.00034442	0.81683	0.0002964	-0.13233	-4.802E-05	362.8698268395628	22.881	0.28027	22.881	22.818	23.098	0					15	9	3	0	0	0	0.14603	1	6796	6796		75.043	7.5496	1	403160			24157	23053	15769	15830	24495	24495					0.04757431851612637
LGHQYLVEK	9	Unmodified	_LGHQYLVEK_					0	0	0		tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.8697204589844	3	362.869591	1085.58694	1.3613	0.00049396	-1.2785	-0.00046394	0.082743	3.0025E-05	362.8691049314319	23.053	0.3176	23.053	22.995	23.312	0					14	6	4	0	0	0	0.071197	1	7900	7900		82.75	15.789	1	2258600			24158	23053	15769	15830	24496	24496					0.04757431851612637
LGHRGRSKAR	10	Unmodified	_LGHRGRSKAR_					0	0	0			REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.8960876464844	3	379.895245	1136.66391	0.821	0.00031189	-2.059	-0.00078219	-1.238	-0.0004703	379.8948245555541	23.274	0.23993	23.274	23.177	23.417	0					12	5	3	0	0	0	0.65895	1	7693	7693		27.047	1.9213	1	540880	+		24159	14343	15770	15831	24497	24497					0.10104087911304305
LGIEKSKK	8	Unmodified	_LGIEKSKK_					0	0	0			REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7868957519531	2	451.78711	901.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.905	1	24.905	24.405	25.405	0								0	0	0	1.7419	1	7421	7421		51.335	0	1		+		24160	17235	15771	15832	24498	24498					0.10494948311236385
LGIELSGRQ	9	Unmodified	_LGIELSGRQ_					0	0	0			REV__SAMD11|p.S218Qfs*4|1|0.46|ENSG00000187634|chr1:939401-939402|-/C|frameshift_variant;REV__nc|ENSG00000187634|Q96NU1|SAMD11	REV__nc|ENSG00000187634|Q96NU1|SAMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7806396484375	2	486.777274	971.539994	-0.69721	-0.00033939	1.1008	0.00053584	0.40358	0.00019645	486.77785062966655	20.003	0.37055	20.003	19.741	20.112	0					18	7	3	0	0	0	0.30951	1	6381	6381		49.442	5.3247	1	2043800	+		24161	17128;21164	15772	15833	24499	24499					0.05308572300486958
LGIGGVFRLVE	11	Unmodified	_LGIGGVFRLVE_					0	0	0			REV__ENSG00000106537|ENST00000262067|TSPAN13	REV__ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.3470458984375	2	580.345323	1158.67609	3.247	0.0018844	-0.30334	-0.00017604	2.9436	0.0017083	580.3451389133681	17.809	0.21797	17.809	17.649	17.867	0					7	4	3	0	0	0	0.15477	1	5219	5219		79.713	22.992	1	714660	+		24162	13827	15773	15834	24500	24500					0.10310266811120528
LGIKISLR	8	Unmodified	_LGIKISLR_					0	0	0		ENST00000366812.5_1_1:226334087-226334237:-|nuORF	ENST00000366812.5_1_1:226334087-226334237:-|nuORF	ENST00000366812.5_1_1:226334087-226334237:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.3055419921875	2	450.30547	898.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.875	1	13.875	13.375	14.375	0								0	0	0	1.7419	1	2915	2915		12.959	0	1				24163	8900	15774	15835	24501	24501					0.1430324492781665
LGILMGVAIRT	11	Oxidation (M)	_LGILM(Oxidation (M))GVAIRT_		LGILM(1)GVAIRT		LGILM(55)GVAIRT	0	0	1		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.2337951660156	3	387.233765	1158.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.864	1	17.864	17.364	18.364	0								0	0	0	0.2814	1	5381	5381		54.722	14.664	1				24164	2254	15775	15836	24502	24502		101			0.10647193593467819
LGILVVRGDC	10	Unmodified	_LGILVVRGDC_					0	0	0		ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	ENSG00000157680|ENST00000614521|DGKI	ENSG00000157680|ENST00000614521|DGKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.8661804199219	3	348.867193	1043.57975	-0.072052	-2.5137E-05	-3.6894	-0.0012871	-3.7614	-0.0013122	348.8660836729034	21.862	0.10595	21.862	21.806	21.912	0					4	2	2	0	0	0	0.61187	1	6429	6429		24.232	0	1	77749			24165	5228	15776	15837	24503	24503					0.059703759795411315
LGITGTVGAL	10	Unmodified	_LGITGTVGAL_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.27117919921875	2	451.271293	900.528032	-0.33416	-0.0001508	-0.023944	-1.0805E-05	-0.3581	-0.0001616	451.27130656098416	32.872	0.26989	32.872	32.782	33.052	0					9	6	2	0	0	0	0.52707	1	12534	12534		42.396	5.237	1	109830	+		24166	17527	15777	15838	24504	24504					0.07378955557271638
LGITLVGHQK	10	Unmodified	_LGITLVGHQK_					0	0	0		nc|ENSG00000135333|Q15375-2|EPHA7;nc|ENSG00000135333|Q15375-4|EPHA7;ENSG00000135333|ENST00000369303|EPHA7	nc|ENSG00000135333|Q15375-2|EPHA7	nc|ENSG00000135333|Q15375-2|EPHA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.88543701171875	3	355.885353	1064.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.222	1	18.222	17.722	18.722	0								0	0	0	0.29806	1	5413	5413		51.193	6.8155	1				24167	3982	15778	15839	24505	24505					0.1044971112262374
LGKAKPLA	8	Unmodified	_LGKAKPLA_					0	0	0		ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.2658386230469	2	399.265813	796.517074	-0.08474	-3.3834E-05	-0.063363	-2.5299E-05	-0.1481	-5.9133E-05	399.26572007825706	31.058	0.16645	31.058	30.983	31.15	0					10	6	2	0	0	0	0.8006	1	9950	9950		20.482	0	1	53706			24168	9507	15779	15840	24506	24506					0.11067597973658394
LGKAKPLA	8	Unmodified	_LGKAKPLA_					0	0	0		ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.265625	2	399.265813	796.517074	-0.3427	-0.00013683	0.26795	0.00010698	-0.074747	-2.9844E-05	399.26581564175484	31.368	0.21005	31.368	31.242	31.452	0					12	5	3	0	0	0	0.74117	1	11402	11402		28.254	5.2176	1	327830			24169	9507	15779	15840	24507	24507					0.11067597973658394
LGKCPCLGV	9	Unmodified	_LGKCPCLGV_					0	0	0			REV__ENST00000456170.5_1_1:44686783-44687191:-|nuORF	REV__ENST00000456170.5_1_1:44686783-44687191:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.2345275878906	2	445.235341	888.45613	0.45671	0.00020334	-1.5083	-0.00067155	-1.0516	-0.00046821	445.2345747595994	21.283	0.20628	21.283	21.168	21.374	0					6	4	2	0	0	0	0.57706	1	6170	6170		24.203	0	1	52090	+		24170	19346	15780	15841	24508	24508					0.007440016075634048
LGKDITPI	8	Unmodified	_LGKDITPI_					0	0	0		ENSG00000174808|ENST00000395743|BTC	ENSG00000174808|ENST00000395743|BTC	ENSG00000174808|ENST00000395743|BTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7596740722656	2	428.760561	855.506569	-0.23247	-9.9672E-05	-0.66814	-0.00028647	-0.90061	-0.00038614	428.7603980476031	30.951	0.17901	30.951	30.864	31.043	0					7	4	2	0	0	0	0.52345	1	10637	10637		57.811	0	1	46342			24171	6513	15781	15842	24509	24509					0.07303570528563341
LGKEGVQN	8	Unmodified	_LGKEGVQN_					0	0	0			REV__nc|ENSG00000073737|Q9BPW9-3|DHRS9	REV__nc|ENSG00000073737|Q9BPW9-3|DHRS9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.729736328125	2	422.729792	843.445031	0.99201	0.00041935	-1.4594	-0.00061692	-0.46736	-0.00019757	422.7291708966496	25.961	0.22175	25.961	25.874	26.096	0					14	5	4	0	0	0	0.43813	1	8909	8909		66.429	4.3219	1	313840	+		24172	13208	15782	15843	24510	24510					0.017046388292783377
LGKEITWPYL	10	Unmodified	_LGKEITWPYL_					0	0	0		SLC2A9|p.S229I|1|0.31|ENSG00000109667|chr4:9942041-9942041|C/A|missense_variant	SLC2A9|p.S229I|1|0.31|ENSG00000109667|chr4:9942041-9942041|C/A|missense_variant	SLC2A9|p.S229I|1|0.31|ENSG00000109667|chr4:9942041-9942041|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.3379516601562	2	610.339707	1218.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.354	1	39.354	38.854	39.854	0								0	0	0	0.41967	1	15475	15475		24.519	1.9395	1				24173	22408	15783	15844	24511	24511					0.06427444716996433
LGKGKKEE	8	Unmodified	_LGKGKKEE_					0	0	0			REV__ENSG00000166152|ENST00000299191|C16orf78	REV__ENSG00000166152|ENST00000299191|C16orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7612609863281	2	444.761092	887.507631	0.59142	0.00026304	1.597	0.00071029	2.1884	0.00097334	444.76164393050374	36.863	0.32876	36.863	36.751	37.08	0					14	9	2	0	0	0	0.52345	1	13929	13929		57.811	0	1	115530	+		24174	16095	15784	15845	24512	24512					0.059377848974691005
LGKGYSQA	8	Unmodified	_LGKGYSQA_					0	0	0		ENST00000524751.5_1_11:126139211-126143243:+|nuORF;ENST00000526525.1_1_11:126139211-126143019:+|nuORF	ENST00000524751.5_1_11:126139211-126143243:+|nuORF	ENST00000524751.5_1_11:126139211-126143243:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.218505859375	2	412.21906	822.423567	0.63973	0.00026371	-1.0699	-0.00044103	-0.43017	-0.00017732	412.2184787282717	17.594	0.11221	17.594	17.524	17.636	0					5	3	2	0	0	0	0.68432	1	4237	4237		35.618	3.6634	1	57960			24175	10350	15785	15846	24513	24513					0.005252538005720453
LGKKEMHAF	9	Oxidation (M)	_LGKKEM(Oxidation (M))HAF_		LGKKEM(1)HAF		LGKKEM(74)HAF	0	0	1		ENSG00000108187|ENST00000358769|PBLD	ENSG00000108187|ENST00000358769|PBLD	ENSG00000108187|ENST00000358769|PBLD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7805786132812	2	538.781502	1075.54845	-1.4665	-0.00079012	-0.46927	-0.00025283	-1.9358	-0.0010429	538.7813066142038	15.04	0.095406	15.04	14.977	15.073	0					6	3	2	0	0	0	0.1236	1	3299	3299		73.975	73.975	1	224790			24176	2518	15786	15847	24514	24514		109			0.013698029454189964
LGKKLDRY	8	Unmodified	_LGKKLDRY_					0	0	0			REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	331.5343933105469	3	331.534431	991.581465	-0.66755	-0.00022131	0.35316	0.00011709	-0.31438	-0.00010423	331.53458733092896	22.074	0.10147	22.074	22.007	22.108	0					5	3	2	0	0	0	0.78999	1	6449	6449		10.866	1.1599	1	126700	+		24177	15869	15787	15848	24515	24515					0.0853375305979398
LGKKTLKHL	9	Unmodified	_LGKKTLKHL_					0	0	0			REV__ENSG00000006607|ENST00000264042|FARP2	REV__ENSG00000006607|ENST00000264042|FARP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.3455200195312	2	519.345126	1036.6757	1.1309	0.0005873	-0.30732	-0.00015961	0.82353	0.0004277	519.3448062046091	12.407	0.17922	12.407	12.276	12.455	0					6	4	2	0	0	0	0.078509	1	2773	2773		79.451	10.664	1	149590	+		24178	12857	15788	15849	24516	24516					0.15882891881938122
LGKLHIKD	8	Unmodified	_LGKLHIKD_					0	0	0			REV__ENSG00000174010|ENST00000328046|KLHL15	REV__ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2868957519531	2	462.287277	922.560001	0.79777	0.0003688	-1.236	-0.00057139	-0.43822	-0.00020258	462.2867016108798	31.966	0.46814	31.966	31.751	32.219	0					18	9	3	0	0	0	0.58597	1	12014	12014		51.335	3.6781	1	453660	+		24179	16541	15789	15850	24517	24517					0.09562368031095048
LGKQALAS	8	Unmodified	_LGKQALAS_					0	0	0			REV__RHOQ|p.T167A|1|0.33|ENSG00000119729|chr2:46580964-46580964|A/G|missense_variant	REV__RHOQ|p.T167A|1|0.33|ENSG00000119729|chr2:46580964-46580964|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	394.23699951171875	2	394.237253	786.459953	-1.263	-0.00049791	0.93973	0.00037048	-0.32325	-0.00012744	394.2378544628824	32.51	0.08757	32.51	32.438	32.526	0					6	3	2	0	0	0	0.7126	1	10849	10849		31.955	1.4512	1	51581	+		24180	21463	15790	15851	24518	24518					0.05818130697264223
LGKQSQAL	8	Unmodified	_LGKQSQAL_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7484436035156	2	422.747985	843.481417	0.13392	5.6615E-05	-0.029784	-1.2591E-05	0.10414	4.4024E-05	422.7481759288131	19.001	0.10624	19.001	18.941	19.048	0					4	2	2	0	0	0	0.41701	1	5083	5083		68.787	1.2932	1	60612	+		24181	16012	15791	15852	24519	24519					0.053415157259905754
LGKSGHLQVN	10	Unmodified	_LGKSGHLQVN_					0	0	0		ENSG00000148604|ENST00000652092|RGR;nc|ENSG00000148604|P47804-2|RGR;ENST00000483771.5_1_10:86008492-86018392:+|nuORF	ENSG00000148604|ENST00000652092|RGR	ENSG00000148604|ENST00000652092|RGR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7959594726562	2	526.795998	1051.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.491	1	18.491	17.991	18.991	0								0	0	0	0.37602	1	4836	4836		37.812	0	1				24182	4843	15792	15853	24520	24520					0.05371663566097595
LGKSTEVPG	9	Unmodified	_LGKSTEVPG_					0	0	0			REV__PARP10|p.N936Qfs*6|1|0.45|ENSG00000178685|chr8:143977756-143977757|-/G|frameshift_variant	REV__PARP10|p.N936Qfs*6|1|0.45|ENSG00000178685|chr8:143977756-143977757|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2450256347656	2	444.245275	886.475997	-0.4862	-0.00021599	0.1061	4.7135E-05	-0.38009	-0.00016886	444.2452677614679	21.025	0.38806	21.025	20.78	21.168	0					19	9	3	0	0	0	0.47038	1	5968	5968		35.618	2.1027	1	275770	+		24183	16738	15793	15854	24521	24521					0.028217921435384596
LGKWKNRRRE	10	Unmodified	_LGKWKNRRRE_					0	0	0			REV__nc|ENSG00000104218|Q1MSJ5-2|CSPP1	REV__nc|ENSG00000104218|Q1MSJ5-2|CSPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2646179199219	3	448.265338	1341.77419	0.63295	0.00028373	-1.7288	-0.00077495	-1.0958	-0.00049122	448.2648385426761	19.817	0.4641	19.817	19.412	19.877	0					13	9	3	0	0	0	0.72365	1	6340	6340		18.262	1.0953	1	1280300	+		24184	13714	15794	15855	24522	24522					0.11696888179699272
LGKYVLYEVQV	11	Unmodified	_LGKYVLYEVQV_					0	0	0		nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.29|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;SDK2|p.P1324Lfs*69|1|0.1|ENSG00000069188|chr17:73391466-73391466|G/-|frameshift_variant;SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-4|SDK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.5820617675781	3	437.583339	1309.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.463	1	20.463	19.963	20.963	0								0	0	0	0.37939	1	6503	6503		41.08	9.4458	1				24185	11436	15795	15856	24523	24523					0.08571385434220247
LGLAKAAE	8	Unmodified	_LGLAKAAE_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.73193359375	2	386.731803	771.449054	-0.77071	-0.00029806	0.95691	0.00037007	0.1862	7.201E-05	386.73189692949774	24.197	0.30308	24.197	24.04	24.343	0					12	9	2	0	0	0	0.64096	1	7356	7356		42.474	1.9018	1	73160	+		24186	13405	15796	15857	24524	24524					0.054187283229907734
LGLAQKVDP	9	Unmodified	_LGLAQKVDP_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3;CNOT3|p.P458Lfs*45|1|0.17|ENSG00000088038|chr19:54148705-54148705|C/-|frameshift_variant	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7761535644531	2	470.776742	939.538931	-2.3147	-0.0010897	1.7497	0.00082372	-0.56495	-0.00026597	470.77753854739444	32.655	0.19808	32.655	32.529	32.727	0					9	6	2	0	0	0	0.45358	1	11357	11357		37.159	0.71236	1	183550			24187	1772	15797	15858	24525	24525					0.0667435793156983
LGLAYVLAN	9	Unmodified	_LGLAYVLAN_					0	0	0		SLC38A6|p.G74S|1|0.19|ENSG00000139974|chr14:60982622-60982622|G/A|missense_variant;ENST00000532148.5_1_14:61447983-61468748:+|nuORF;SLC38A6|p.K213Nfs*8|1|0.24|ENSG00000139974|chr14:61043156-61043156|A/-|frameshift_variant;SLC38A6|p.L372*|1|0.38|ENSG00000139974|chr14:61051846-61051846|T/-|frameshift_variant;SLC38A6|p.L372Ffs*19|1|0.42|ENSG00000139974|chr14:61051845-61051846|-/T|frameshift_variant;ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	SLC38A6|p.G74S|1|0.19|ENSG00000139974|chr14:60982622-60982622|G/A|missense_variant	SLC38A6|p.G74S|1|0.19|ENSG00000139974|chr14:60982622-60982622|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.27374267578125	2	467.273835	932.533118	-0.50665	-0.00023674	-0.80231	-0.0003749	-1.309	-0.00061164	467.2739313180902	35.081	0.71245	35.081	34.635	35.347	0					37	14	3	0	0	0	0.25726	1	13360	13360		54.765	4.7401	1	628740			24188	4363	15798	15859	24526	24526					0.06415259419895847
LGLCAALPVT	10	Unmodified	_LGLCAALPVT_					0	0	0		ENST00000495983.1_1_9:130670673-130672537:-|nuORF	ENST00000495983.1_1_9:130670673-130672537:-|nuORF	ENST00000495983.1_1_9:130670673-130672537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2773132324219	2	479.275521	956.536489	2.2885	0.0010968	3.7683	0.0018061	6.0568	0.0029029	479.2760420562161	26.199	0.31464	26.199	26.017	26.332	0					14	6	3	0	0	0	0.58896	1	9254	9254		35.618	0.46626	1	655810			24189	10114	15799	15860	24527	24527					0.05648186202256511
LGLDSLNKKRL	11	Unmodified	_LGLDSLNKKRL_					0	0	0		MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant;MAML1|p.A378Qfs*63|1|0.17|ENSG00000161021|chr5:179766137-179766137|C/-|frameshift_variant;ENSG00000161021|ENST00000292599|MAML1	MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant	MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.59393310546875	3	419.59435	1255.76122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.248	1	32.248	31.748	32.748	0								0	0	0	0.42265	1	10414	10414		32.034	2.7891	1				24190	5400	15800	15861	24528	24528					0.1435701227694608
LGLFLGQDEK	10	Unmodified	_LGLFLGQDEK_					0	0	0		ENST00000537708.1_1_12:6669555-6669804:-|nuORF	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.2328796386719	3	373.873001	1118.59717	0.79112	0.00029578	0.095315	3.5636E-05	0.88643	0.00033141	373.87312553070467	20.201	0.33668	20.201	20.019	20.356	0					18	7	3	0	0	0	0.63224	1	6243	6243		30.318	3.6248	1	386120			24191	10509	15801	15862	24529	24529					0.04261994786179457
LGLFWTYK	8	Unmodified	_LGLFWTYK_					0	0	0			REV__tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	REV__tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.28564453125	2	514.284203	1026.55385	3.2044	0.001648	0.024969	1.2841E-05	3.2293	0.0016608	514.2841274973457	48.817	0.22717	48.817	48.744	48.971	0					17	12	3	0	0	0	0.41952	1	19370	19370		68.485	15.133	1	132530	+		24192	21814	15802	15863	24530	24530					0.04163849799556374
LGLFYSSNR	9	Unmodified	_LGLFYSSNR_					0	0	0			REV__nc|ENSG00000198178|Q8WTT0-2|CLEC4C	REV__nc|ENSG00000198178|Q8WTT0-2|CLEC4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.77880859375	2	528.777274	1055.53999	3.4595	0.0018293	-0.49474	-0.00026161	2.9647	0.0015677	528.7772669980681	24.405	0.41534	24.405	24.246	24.661	0					19	8	4	0	0	0	0.15163	1	8424	8424		60.972	13.056	1	7725100	+		24193	17386	15803	15864	24531	24531					0.01444572300465552
LGLGAALA	8	Unmodified	_LGLGAALA_					0	0	0			REV__nc|ENSG00000260001|H3BV60|TGFBR3L	REV__nc|ENSG00000260001|H3BV60|TGFBR3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.21710205078125	2	343.215789	684.417025	3.026	0.0010386	0.72771	0.00024976	3.7537	0.0012883	343.2160229699822	29.625	0.35721	29.625	29.424	29.781	0					18	7	3	0	0	0	0.77013	1	10839	10839		24.504	0	1	786890	+		24194	17773	15804	15865	24532	24532					0.062193606398523116
LGLGAAPT	8	Unmodified	_LGLGAAPT_					0	0	0		ENST00000566056.1_1_16:30965161-30965422:+|nuORF	ENST00000566056.1_1_16:30965161-30965422:+|nuORF	ENST00000566056.1_1_16:30965161-30965422:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.20654296875	2	350.205421	698.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.382	1	48.382	47.882	48.882	0								0	0	0	1.7419	1	19232	19232		21.702	1.2205	1				24195	10757	15805	15866	24533	24533					0.03502770260183752
LGLGGSPV	8	Unmodified	_LGLGGSPV_					0	0	0		nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.2066955566406	2	350.205421	698.39629	3.6238	0.0012691	0.35698	0.00012502	3.9808	0.0013941	350.2054623495841	31.14	0.53363	31.14	31.039	31.573	0					38	20	4	0	0	0	0.78146	1	10272	10272		23.037	6.3317	1	1282000			24196	6712	15806	15867	24534	24534					0.035027702601951205
LGLGVSPG	8	Unmodified	_LGLGVSPG_					0	0	0		ENST00000474135.1_1_7:150747249-150747845:+|nuORF;ENST00000590669.5_1_19:10362732-10362900:+|nuORF;nc|ENSG00000213199|Q9UHC3-4|ASIC3;ENSG00000213199|ENST00000349064|ASIC3;nc|ENSG00000213199|Q9UHC3-2|ASIC3;nc|ENSG00000213199|Q9UHC3-3|ASIC3	ENST00000474135.1_1_7:150747249-150747845:+|nuORF	ENST00000474135.1_1_7:150747249-150747845:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.20733642578125	2	350.205421	698.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.574	1	41.574	41.074	42.074	0								0	0	0	1.7419	1	16546	16546		29.842	1.5873	1				24197	9891	15807	15868	24535	24535					0.035027702601951205
LGLKKGSE	8	Unmodified	_LGLKKGSE_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.2502136230469	2	416.25036	830.486168	-0.33978	-0.00014143	-0.10912	-4.5422E-05	-0.4489	-0.00018685	416.2503534755229	20.839	0.31658	20.839	20.743	21.059	0					9	6	2	0	0	0	0.70055	1	6707	6707		33.516	3.0119	1	178980	+		24198	14146	15808	15869	24536	24536					0.06414399868765486
LGLLAPAGFL	10	Unmodified	_LGLLAPAGFL_					0	0	0			REV__ENSG00000159958|ENST00000291232|TNFRSF13C	REV__ENSG00000159958|ENST00000291232|TNFRSF13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2977600097656	2	486.299853	970.585153	-2.9132	-0.0014167	-1.8542	-0.00090168	-4.7674	-0.0023184	486.2989957328211	36.451	0.23563	36.451	36.361	36.597	0					17	11	2	0	0	0	0.30737	1	13040	13040		65.897	8.0862	1	121920	+		24199	15732	15809	15870	24537	24537					0.09868422833653767
LGLLAPLASA	10	Unmodified	_LGLLAPLASA_					0	0	0		ENST00000545024.1_5:69806308-69808341:+|nuORF;ENST00000515156.2_1_5:68927792-68932223:+|nuORF	ENST00000545024.1_5:69806308-69808341:+|nuORF	ENST00000545024.1_5:69806308-69808341:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.28875732421875	2	463.289485	924.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.529	1	29.529	29.029	30.029	0								0	0	0	0.37276	1	10556	10556		38.806	0	1				24200	10264	15810	15871	24538	24538					0.09911832453997249
LGLLKPPQP	9	Unmodified	_LGLLKPPQP_					0	0	0			REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|18|3|anti-sense	REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|18|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.8046569824219	2	481.805303	961.596052	0.080173	3.8628E-05	-0.58627	-0.00028247	-0.5061	-0.00024384	481.80496669089945	33.617	0.69762	33.617	33.219	33.917	0					42	26	2	0	0	0	0.25109	1	10825	10825		55.504	7.5886	1	103270	+		24201	12149	15811	15872	24539	24539					0.11371825207936581
LGLLKPPQP	9	Unmodified	_LGLLKPPQP_					0	0	0			REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|18|3|anti-sense	REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|18|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.8049621582031	2	481.805303	961.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.556	1	33.556	33.056	34.056	0								0	0	0	0.044332	1	12420	12420		88.643	0	1		+		24202	12149	15811	15872	24540	24540					0.11371825207936581
LGLLKPPQP	9	Unmodified	_LGLLKPPQP_					0	0	0			REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|18|3|anti-sense	REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|18|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.8047180175781	2	481.805303	961.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.727	1	33.727	33.227	34.227	0								0	0	0	0.22106	1	12931	12931		47.916	0	1		+		24203	12149	15811	15872	24541	24541					0.11371825207936581
LGLLQEWK	8	Unmodified	_LGLLQEWK_					0	0	0			REV__ENST00000265354.5_1_6:43148006-43148234:+|nuORF	REV__ENST00000265354.5_1_6:43148006-43148234:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7850036621094	2	493.78711	985.559667	-2.5495	-0.0012589	-1.5206	-0.00075087	-4.0701	-0.0020098	493.7862271054334	15.435	0.10387	15.435	15.367	15.471	0					5	3	2	0	0	0	0.74405	1	3469	3469		27.882	1.1893	1	91670	+		24204	18075	15812	15873	24542	24542					0.06630948311226348
LGLLRWAE	8	Unmodified	_LGLLRWAE_					0	0	0		sp|P09723|US21_HCMVAUncharacterizedproteinHWLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US21PE=3SV=1;sp|F5HHT6|US21_HCMVMMembraneproteinUS21OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US21PE=3SV=1	sp|P09723|US21_HCMVAUncharacterizedproteinHWLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US21PE=3SV=1	sp|P09723|US21_HCMVAUncharacterizedproteinHWLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US21PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2774353027344	2	479.279452	956.544351	-2.9278	-0.0014032	0.77622	0.00037203	-2.1516	-0.0010312	479.27884697208054	26.059	0.31499	26.059	25.85	26.165	0					13	6	3	0	0	0	0.54629	1	8350	8350		55.504	2.1528	1	120010			24205	22458	15813	15874	24543	24543					0.06434081514032641
LGLLWTASI	9	Unmodified	_LGLLWTASI_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2891540527344	2	487.289485	972.564418	0.63251	0.00030822	-3.5286	-0.0017195	-2.8961	-0.0014112	487.2877070583849	35.751	0.32532	35.751	35.637	35.963	0					14	9	2	0	0	0	0.11118	1	13851	13851		76.847	10.417	1	1326100	+		24206	13228	15814	15875	24544	24544					0.07703832453978521
LGLMVIAAALL	11	Unmodified	_LGLMVIAAALL_					0	0	0		nc|ENSG00000181036|Q6DN72-4|FCRL6;nc|ENSG00000181036|Q6DN72-3|FCRL6;nc|ENSG00000181036|Q6DN72-2|FCRL6;ENSG00000181036|ENST00000368106|FCRL6	nc|ENSG00000181036|Q6DN72-4|FCRL6	nc|ENSG00000181036|Q6DN72-4|FCRL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.2326965332031	3	362.231473	1083.67259	0.47957	0.00017372	2.8483	0.0010317	3.3279	0.0012055	362.23258791989696	16.234	0.22739	16.234	16.135	16.362	0					9	5	3	0	0	0	0.63398	1	4366	4366		33.922	2.3918	1	340270			24207	6835	15815	15876	24545	24545					0.13409880712902122
LGLNLIFLV	9	Unmodified	_LGLNLIFLV_					0	0	0		TTYH2|p.V190Cfs*9|2|0.39|ENSG00000141540|chr17:74237447-74237447|G/-|frameshift_variant;ENSG00000141540|ENST00000269346|TTYH2	TTYH2|p.V190Cfs*9|2|0.39|ENSG00000141540|chr17:74237447-74237447|G/-|frameshift_variant	TTYH2|p.V190Cfs*9|2|0.39|ENSG00000141540|chr17:74237447-74237447|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3215637207031	2	501.323328	1000.6321	-2.1054	-0.0010555	-1.8162	-0.0009105	-3.9216	-0.001966	501.32231249204887	18.274	0.15514	18.274	18.18	18.335	0					9	4	3	0	0	0	0.2873	1	4734	4734		44.531	0	1	208000			24208	4456	15816	15877	24546	24546					0.1318128238481222
LGLQLPVSV	9	Unmodified	_LGLQLPVSV_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2897033691406	2	463.289485	924.564418	-0.14393	-6.6681E-05	-0.2419	-0.00011207	-0.38583	-0.00017875	463.28933990995745	29.482	0.43237	29.482	29.251	29.683	0					20	9	3	0	0	0	0.35045	1	10867	10867		45.952	10.334	1	1183800	+		24209	13693	15817	15878	24547	24547					0.09911832453997249
LGLQNKTIS	9	Unmodified	_LGLQNKTIS_					0	0	0		ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2879333496094	2	487.287474	972.560395	-2.9122	-0.0014191	0.39233	0.00019118	-2.5199	-0.0012279	487.28903280983343	35.548	0.27988	35.548	35.432	35.712	0					23	11	3	0	0	0	0.35021	1	12654	12654		45.972	0	1	150910			24210	10142	15818	15879	24548	24548					0.07301742960294177
LGLQQVLLQ	9	Unmodified	_LGLQQVLLQ_					0	0	0			REV__ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	REV__ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.8780822753906	3	337.878087	1010.61243	0.37255	0.00012587	-0.50909	-0.00017201	-0.13654	-4.6135E-05	337.8778895732552	23.102	0.16732	23.102	23.012	23.179	0					12	3	4	0	0	0	0.33044	1	7909	7909		47.657	1.6851	1	508090	+		24211	12211	15819	15880	24549	24549					0.10754906374052098
LGLRRQFY	8	Unmodified	_LGLRRQFY_					0	0	0			REV__ENSG00000147100|ENST00000587091|SLC16A2	REV__ENSG00000147100|ENST00000587091|SLC16A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.8030395507812	2	526.803626	1051.5927	0.63072	0.00033226	-1.2049	-0.00063473	-0.57416	-0.00030247	526.8030107348213	38.552	0.21176	38.552	38.449	38.661	0					7	4	2	0	0	0	0.68754	1	15155	15155		35.201	0	1	163640	+		24212	15331	15820	15881	24550	24550					0.06896575153950835
LGLRTGVDFI	10	Unmodified	_LGLRTGVDFI_					0	0	0			REV__ENST00000553636.1_1_14:99959014-99959269:+|nuORF	REV__ENST00000553636.1_1_14:99959014-99959269:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.2122802734375	3	364.213358	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.436	1	12.436	11.936	12.936	0								0	0	0	0.4044	1	2616	2616		29.17	2.1227	1		+		24213	12373	15821	15882	24551	24551					0.07702004885709357
LGLSAAPG	8	Unmodified	_LGLSAAPG_					0	0	0		nc|ENSG00000204248|P13942-9|COL11A2;COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant;COL11A2|p.P811Lfs*87|1|0.54|ENSG00000204248|chr6:33173394-33173394|G/-|frameshift_variant;COL11A2|p.G956Wfs*11|1|0.1|ENSG00000204248|chr6:33171740-33171741|-/G|frameshift_variant;nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	nc|ENSG00000204248|P13942-9|COL11A2	nc|ENSG00000204248|P13942-9|COL11A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.19891357421875	2	343.197596	684.38064	3.6497	0.0012526	0.51366	0.00017629	4.1633	0.0014288	343.1976920674977	27.308	0.31442	27.308	27.229	27.544	0					18	11	2	0	0	0	0.78431	1	8671	8671		10.185	0	1	614870			24214	593	15822	15883	24552	24552					0.025824837431400738
LGLSANTIQ	9	Unmodified	_LGLSANTIQ_					0	0	0			REV__nc|ENSG00000100979|P55058-2|PLTP	REV__nc|ENSG00000100979|P55058-2|PLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.75811767578125	2	458.758549	915.502546	0.08183	3.754E-05	-0.71095	-0.00032615	-0.62912	-0.00028861	458.75819526323494	27.888	0.42459	27.888	27.658	28.082	0					23	10	3	0	0	0	0.28897	1	9148	9148		51.193	3.5354	1	485450	+		24215	13579	15823	15884	24553	24553					0.04141481034866956
LGLTAAAGLAP	11	Unmodified	_LGLTAAAGLAP_					0	0	0			REV__LCE2B|p.Q35Sfs*39|1|0.2|ENSG00000159455|chr1:152686943-152686943|C/-|frameshift_variant	REV__LCE2B|p.Q35Sfs*39|1|0.2|ENSG00000159455|chr1:152686943-152686943|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.78411865234375	2	477.784567	953.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.301	1	26.301	25.801	26.801	0								0	0	0	0.36993	1	8254	8254		42.396	1.618	1		+		24216	20836	15824	15885	24554	24554					0.07594644448613508
LGLVGLGGAKY	11	Unmodified	_LGLVGLGGAKY_					0	0	0		ENST00000476612.1_1_1:154523812-154524267:-|nuORF	ENST00000476612.1_1_1:154523812-154524267:-|nuORF	ENST00000476612.1_1_1:154523812-154524267:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.8780517578125	3	349.878087	1046.61243	-0.7028	-0.0002459	0.59808	0.00020925	-0.10473	-3.6642E-05	349.8782810929743	32.074	0.32134	32.074	31.95	32.272	0					35	13	4	0	0	0	0.74809	1	10659	10659		20.03	0.7678	1	990970			24217	9909	15825	15886	24555	24555					0.09098906374060789
LGLVPLEDS	9	Unmodified	_LGLVPLEDS_					0	0	0			REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7610778808594	2	471.760758	941.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.735	1	21.735	21.235	22.235	0								0	0	0	0.27166	1	6289	6289		40.573	0	1		+		24218	13883	15826	15887	24556	24556					0.03386945457771162
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.7800598144531	2	434.778754	867.542954	2.6266	0.001142	0.21473	9.336E-05	2.8413	0.0012354	434.7787471271742	26.63	3.2234	26.63	26.017	29.241	0					110	64	4	0	0	0	0.30268	1	9274	9274		50.025	5.9077	1	2775700			24219	5446	15827	15888	24557	24557					0.10388447425293634
LGLVYKVQQ	9	Unmodified	_LGLVYKVQQ_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.8780517578125	3	349.878087	1046.61243	-1.9863	-0.00069498	1.2567	0.00043969	-0.72966	-0.00025529	349.8787217741054	32.026	0.29026	32.026	31.948	32.239	0					16	8	3	0	0	0	0.5392	1	11101	11101		35.618	8.9254	1	781570			24220	3563	15828	15889	24558	24558					0.09098906374038052
LGLWAGRAE	9	Unmodified	_LGLWAGRAE_					0	0	0		ENST00000366971.8_1_1:213031696-213031939:+|nuORF	ENST00000366971.8_1_1:213031696-213031939:+|nuORF	ENST00000366971.8_1_1:213031696-213031939:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2689514160156	2	486.766709	971.518865	2.5337	0.0012333	-0.81393	-0.00039619	1.7197	0.00083711	486.766297022716	34.905	0.51199	34.905	34.75	35.262	0					15	10	2	0	0	0	0.18605	1	13560	13560		63.306	4.5243	1	929340			24221	8902	15829	15890	24559	24559					0.03196606991616591
LGMECSKR	8	Carbamidomethyl (C)	_LGMEC(Carbamidomethyl (C))SKR_	LGMEC(1)SKR		LGMEC(53)SKR		0	1	0			REV__ENSG00000178896|ENST00000316052|EXOSC4	REV__ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7374572753906	2	490.736237	979.457921	2.6742	0.0013123	0.24779	0.0001216	2.922	0.0014339	490.73626582804627	33.935	0.38748	33.935	33.793	34.18	0					17	8	3	0	0	0	0.5676	1	12961	12961		53.351	53.351	1	1202300	+		24222	16750	15830	15891	24560	24560	593				-0.0326298937447973
LGMGLGSPGR	10	Unmodified	_LGMGLGSPGR_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-1|RADIL	REV__nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7525939941406	2	472.752744	943.490935	-0.026203	-1.2387E-05	-0.051772	-2.4475E-05	-0.077975	-3.6863E-05	472.7529364994253	24.555	0.33307	24.555	24.396	24.729	0					22	9	3	0	0	0	0.55603	1	7268	7268		39.253	0	1	272830	+		24223	15672	15831	15892	24561	24561					0.016929607398878943
LGMGLGSPGR	10	Unmodified	_LGMGLGSPGR_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-1|RADIL	REV__nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7525939941406	2	472.752744	943.490935	-2.4787	-0.0011718	1.4424	0.0006819	-1.0363	-0.00048992	472.7535434939745	24.65	0.35926	24.65	24.455	24.814	0					19	8	3	0	0	0	0.44601	1	7679	7679		51.193	5.2204	1	351800	+		24224	15672	15831	15892	24562	24562					0.016929607398878943
LGMLFCDQR	9	Unmodified	_LGMLFCDQR_					0	0	0			REV__ENST00000379066.5_1_2:37543834-37543912:-|nuORF	REV__ENST00000379066.5_1_2:37543834-37543912:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7603759765625	2	541.759712	1081.50487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.073	1	25.073	24.573	25.573	0								0	0	0	0.3368	1	7753	7753		27.882	1.1893	1		+		24225	18753	15832	15893	24563	24563					-0.032621298233607376
LGMSMAVTI	9	2 Oxidation (M)	_LGM(Oxidation (M))SM(Oxidation (M))AVTI_		LGM(1)SM(1)AVTI		LGM(58)SM(58)AVTI	0	0	2		ENSG00000232268|ENST00000530443|OR52I1	ENSG00000232268|ENST00000530443|OR52I1	ENSG00000232268|ENST00000530443|OR52I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.73553466796875	2	477.735371	953.456189	-0.075764	-3.6195E-05	-0.030422	-1.4534E-05	-0.10619	-5.0729E-05	477.7354273254053	24.322	0.38449	24.322	24.269	24.653	0					18	11	3	0	0	0	0.23186	1	7160	7160		57.811	7.7867	1	149830			24226	7897	15833	15894	24564	24564		320;321			-0.022400431830874368
LGMVVLLMYF	10	Unmodified	_LGMVVLLMYF_					0	0	0			REV__GRIN2D|p.A855V|1|0.07|ENSG00000105464|chr19:48442273-48442273|C/T|missense_variant	REV__GRIN2D|p.A855V|1|0.07|ENSG00000105464|chr19:48442273-48442273|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	593.3222045898438	2	593.324156	1184.63376	0.12857	7.6282E-05	-4.1707	-0.0024746	-4.0421	-0.0023983	593.3220732758999	32.923	0.13053	32.923	32.876	33.007	0					7	5	2	0	0	0	0.59237	1	10688	10688		35.201	3.5664	1	44584	+		24227	20706	15834	15895	24565	24565					0.04882832086900635
LGMYLVTV	8	Unmodified	_LGMYLVTV_					0	0	0		ENSG00000280204|ENST00000641544|OR1S1;nc|ENSG00000280204|Q8NH92|OR1S1	ENSG00000280204|ENST00000641544|OR1S1	ENSG00000280204|ENST00000641544|OR1S1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2530517578125	2	448.251514	894.488476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.217	1	17.217	16.717	17.717	0								0	0	0	1.7419	1	4246	4246		26.796	1.3459	1				24228	8130	15835	15896	24566	24566					0.03701112282203667
LGNAEPLR	8	Unmodified	_LGNAEPLR_					0	0	0		ENST00000590891.1_1_16:4659124-4659325:-|nuORF	ENST00000590891.1_1_16:4659124-4659325:-|nuORF	ENST00000590891.1_1_16:4659124-4659325:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.24542236328125	2	435.245609	868.476666	0.79763	0.00034717	-1.2157	-0.00052914	-0.41809	-0.00018197	435.2450483842324	22.931	0.26584	22.931	22.772	23.038	0					13	5	3	0	0	0	0.49216	1	7712	7712		60.972	3.1607	1	829410			24229	10957	15836	15897	24567	24567					0.037166315832337204
LGNGLRQSI	9	Unmodified	_LGNGLRQSI_					0	0	0		SLC27A4|p.L457Cfs*36|2|0.21|ENSG00000167114|chr9:128355093-128355093|C/-|frameshift_variant;ENSG00000167114|ENST00000300456|SLC27A4	SLC27A4|p.L457Cfs*36|2|0.21|ENSG00000167114|chr9:128355093-128355093|C/-|frameshift_variant	SLC27A4|p.L457Cfs*36|2|0.21|ENSG00000167114|chr9:128355093-128355093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.27728271484375	2	479.277441	956.540328	0.66316	0.00031784	-0.8505	-0.00040762	-0.18733	-8.9785E-05	479.2768737122324	26.268	0.20817	26.268	26.168	26.376	0					9	4	3	0	0	0	0.11898	1	9393	9393		75.043	2.1641	1	577540			24230	5971	15837	15898	24568	24568					0.06031992020314192
LGNGPGGPGAL	11	Unmodified	_LGNGPGGPGAL_					0	0	0			REV__ENST00000507907.1_1_6:146747775-146755929:+|nuORF	REV__ENST00000507907.1_1_6:146747775-146755929:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.242919921875	2	455.243067	908.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.187	1	27.187	26.687	27.687	0								0	0	0	0.36993	1	8636	8636		42.396	3.59	1		+		24231	15521	15838	15899	24569	24569					0.013683277206155253
LGNIHHKPG	9	Unmodified	_LGNIHHKPG_					0	0	0		ENST00000576518.1_1_17:44055640-44101534:+|nuORF;nc|ENSG00000186868|P10636-3|MAPT;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT	ENST00000576518.1_1_17:44055640-44101534:+|nuORF	ENST00000576518.1_1_17:44055640-44101534:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2978210449219	2	486.772326	971.530098	-0.2366	-0.00011517	-0.20799	-0.00010124	-0.4446	-0.00021642	486.77196960536196	27.651	0.095184	27.651	27.576	27.671	0					4	2	2	0	0	0	0.35045	1	9072	9072		45.952	5.1738	1	45397			24232	10831	15839	15900	24570	24570					0.043194290857513806
LGNILPVSK	9	Unmodified	_LGNILPVSK_					0	0	0		ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant;ADGRF1|p.S617Afs*12|1|0.14|ENSG00000153292|chr6:47009586-47009586|T/-|frameshift_variant;ENSG00000153292|ENST00000371253|ADGRF1	ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant	ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7947082519531	2	470.794935	939.575317	0.15859	7.4665E-05	-1.2429	-0.00058516	-1.0843	-0.0005105	470.7945836164453	35.618	0.38535	35.618	35.416	35.801	0					21	10	3	0	0	0	0.40353	1	13325	13325		41.427	0	1	324900			24233	76	15840	15901	24571	24571					0.10311234828293436
LGNLISTIE	9	Unmodified	_LGNLISTIE_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2743225097656	2	480.274032	958.533512	-1.3871	-0.00066619	2.3924	0.001149	1.0053	0.00048282	480.27508431913583	28.469	0.19821	28.469	28.407	28.605	0					12	7	2	0	0	0	0.1115	1	9173	9173		76.774	13.468	1	320280	+		24234	12221	15841	15902	24572	24572					0.05258634349104341
LGNLSTVLP	9	Unmodified	_LGNLSTVLP_					0	0	0		RTN4|p.L340Pfs*3|1|0.04|ENSG00000115310|chr2:55027080-55027081|-/G|frameshift_variant;RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant;RTN4|p.V670Yfs*4|4|0.29|ENSG00000115310|chr2:55026092-55026092|T/-|frameshift_variant;RTN4|p.V670Sfs*9|1|0.38|ENSG00000115310|chr2:55026091-55026092|-/T|frameshift_variant;RTN4|p.R854Sfs*2|1|0.05|ENSG00000115310|chr2:55025537-55025538|-/AA|frameshift_variant;RTN4|p.K969Efs*10|1|0.04|ENSG00000115310|chr2:55025195-55025196|-/GGGAACATTCC|frameshift_variant;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4	RTN4|p.L340Pfs*3|1|0.04|ENSG00000115310|chr2:55027080-55027081|-/G|frameshift_variant	RTN4|p.L340Pfs*3|1|0.04|ENSG00000115310|chr2:55027080-55027081|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2710266113281	2	457.271293	912.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.335	1	32.335	31.835	32.835	0								0	0	0	0.28996	1	11862	11862		37.159	1.5408	1				24235	2900	15842	15903	24573	24573					0.06826955557278325
LGNQAVYAP	9	Unmodified	_LGNQAVYAP_					0	0	0			REV__PDE6A|p.R582Afs*19|1|0.45|ENSG00000132915|chr5:149886360-149886361|-/T|frameshift_variant	REV__PDE6A|p.R582Afs*19|1|0.45|ENSG00000132915|chr5:149886360-149886361|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7451171875	2	466.745442	931.476331	0.65831	0.00030726	-1.3316	-0.00062152	-0.67329	-0.00031425	466.7447249448538	40.543	0.27453	40.543	40.441	40.716	0					19	11	2	0	0	0	0.32741	1	15981	15981		47.916	7.1374	1	257240	+		24236	14684	15843	15904	24574	24574					0.007852118633650207
LGNRQDFAPI	10	Unmodified	_LGNRQDFAPI_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.8037719726562	2	565.80128	1129.58801	0.29041	0.00016432	3.5231	0.0019934	3.8135	0.0021577	565.8033273123056	37.828	0.1229	37.828	37.759	37.882	0					6	4	2	0	0	0	0.61187	1	14382	14382		32.812	0	1	55684	+		24237	17409	15844	15905	24575	24575					0.02839646220513714
LGNSVLGHLEN	11	Unmodified	_LGNSVLGHLEN_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000475148.1_1_5:139909227-139915158:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	385.2063903808594	3	384.871772	1151.59349	0.54207	0.00020863	-0.32824	-0.00012633	0.21383	8.2298E-05	384.87141667393183	18.848	0.29337	18.848	18.685	18.979	0					11	8	2	0	0	0	0.69983	1	4814	4814		27.644	4.266	1	57719			24238	3724	15845	15906	24576	24576					0.02375325012326357
LGPATAAV	8	Unmodified	_LGPATAAV_					0	0	0		ENST00000379081.5_1_9:34405939-34458505:-|nuORF;ENST00000379089.5_1_9:34405939-34458505:-|nuORF	ENST00000379081.5_1_9:34405939-34458505:-|nuORF	ENST00000379081.5_1_9:34405939-34458505:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.20660400390625	2	350.205421	698.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.92	1	36.92	36.42	37.42	0								0	0	0	1.7419	1	14412	14412		28.254	0	1				24239	9076	15846	15907	24577	24577					0.03502770260183752
LGPEGVPL	8	Unmodified	_LGPEGVPL_					0	0	0		nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF;STAB1|p.V800Cfs*113|1|0.34|ENSG00000010327|chr3:52509914-52509914|G/-|frameshift_variant;STAB1|p.P978Lfs*57|1|0.35|ENSG00000010327|chr3:52512385-52512385|C/-|frameshift_variant;STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant;STAB1|p.R1122Pfs*37|1|0.37|ENSG00000010327|chr3:52513891-52513892|-/C|frameshift_variant;STAB1|p.G1507Afs*84|1|0.26|ENSG00000010327|chr3:52517346-52517346|G/-|frameshift_variant;STAB1|p.E1712Rfs*8|1|0.12|ENSG00000010327|chr3:52519356-52519357|-/C|frameshift_variant;STAB1|p.F2001Lfs*111|1|0.35|ENSG00000010327|chr3:52521452-52521452|T/-|frameshift_variant;ENSG00000010327|ENST00000321725|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2256774902344	2	391.226354	780.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.947	1	44.947	44.447	45.447	0								0	0	0	1.7419	1	16787	16787		21.702	0	1				24240	1038	15847	15908	24578	24578					0.03915325948696591
LGPGAQLV	8	Unmodified	_LGPGAQLV_					0	0	0			REV__ENSG00000197037|ENST00000394152|ZSCAN25	REV__ENSG00000197037|ENST00000394152|ZSCAN25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.7262878417969	2	377.726521	753.438489	0.2348	8.869E-05	-0.61815	-0.00023349	-0.38335	-0.0001448	377.72627523530866	30.643	0.14425	30.643	30.563	30.708	0					6	3	2	0	0	0	0.75243	1	11474	11474		26.796	0	1	180110	+		24241	17304	15848	15909	24579	24579					0.05190745668562613
LGPGPAPPAT	10	Unmodified	_LGPGPAPPAT_					0	0	0		ENSG00000205143|ENST00000378909|ARID3C	ENSG00000205143|ENST00000378909|ARID3C	ENSG00000205143|ENST00000378909|ARID3C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.24029541015625	2	439.242535	876.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.055	1	21.055	20.555	21.555	0								0	0	0	0.2708	1	6036	6036		55.504	6.0627	1				24242	7737	15849	15910	24580	24580					0.027341133516983973
LGPHTLLNI	9	Unmodified	_LGPHTLLNI_					0	0	0		ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.53082275390625	3	326.530798	976.570566	0.0080339	2.6233E-06	0.045652	1.4907E-05	0.053686	1.753E-05	326.5308121765168	20.103	0.11527	20.103	20.044	20.159	0					6	2	3	0	0	0	0.61124	1	6343	6343		27.882	0	1	459260			24243	10228	15850	15911	24581	24581					0.0813435068552053
LGPKGGKH	8	Unmodified	_LGPKGGKH_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.2373046875	2	397.237587	792.460622	-0.28834	-0.00011454	0.26231	0.0001042	-0.02603	-1.034E-05	397.2376441895413	22.379	0.23617	22.379	22.237	22.474	0					12	5	3	0	0	0	0.8006	1	7252	7252		20.482	0	1	688250	+		24244	14419	15851	15912	24582	24582					0.05608970136984226
LGPKVSDFV	9	Unmodified	_LGPKVSDFV_					0	0	0			REV__ENSG00000187097|ENST00000334696|ENTPD5	REV__ENSG00000187097|ENST00000334696|ENTPD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2723388671875	2	481.271293	960.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.732	1	32.732	32.232	33.232	0								0	0	0	0.23459	1	10940	10940		45.952	1.8352	1		+		24245	17110	15852	15913	24583	24583					0.04618955557282334
LGPLPGGNTL	10	Unmodified	_LGPLPGGNTL_					0	0	0			REV__ENSG00000145214|ENST00000273814|DGKQ	REV__ENSG00000145214|ENST00000273814|DGKQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7686767578125	2	469.768917	937.523281	-0.43175	-0.00020282	-0.034862	-1.6377E-05	-0.46661	-0.0002192	469.7691139395319	32.427	0.19803	32.427	32.339	32.537	0					13	8	2	0	0	0	0.26198	1	10483	10483		71.877	13.096	1	91172	+		24246	15261	15853	15914	24584	24584					0.052020714145328384
LGPLPGGNTL	10	Unmodified	_LGPLPGGNTL_					0	0	0			REV__ENSG00000145214|ENST00000273814|DGKQ	REV__ENSG00000145214|ENST00000273814|DGKQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.76898193359375	2	469.768917	937.523281	-0.93566	-0.00043954	0.38211	0.0001795	-0.55355	-0.00026004	469.7693118476983	32.508	0.14697	32.508	32.401	32.547	0					8	5	2	0	0	0	0.58189	1	10827	10827		36.447	0.82846	1	144730	+		24247	15261	15853	15914	24585	24585					0.052020714145328384
LGPPLARA	8	Unmodified	_LGPPLARA_					0	0	0			REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.74755859375	2	397.747788	793.481023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.167	1	16.167	15.667	16.667	0								0	0	0	1.7419	1	4568	4568		14.664	0	1		+		24248	18608	15854	15915	24586	24586					0.07602140796791446
LGPPPAPPLRP	11	Unmodified	_LGPPPAPPLRP_					0	0	0		ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.2274169921875	3	371.225598	1110.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.746	1	56.746	56.246	57.246	0								0	0	0	0.45344	1	21227	21227		25.126	0	1				24249	1714	15855	15916	24587	24587					0.10406301502280257
LGPSAAQEL	9	Unmodified	_LGPSAAQEL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.23687744140625	2	443.23745	884.460347	0.51785	0.00022953	-1.0315	-0.00045721	-0.51367	-0.00022768	443.23684526268335	36.745	0.4376	36.745	36.532	36.97	0					28	13	3	0	0	0	0.078509	1	14340	14340		85.161	4.7062	1	291420			24250	1085	15856	15917	24588	24588					0.013495056264787308
LGPSAAQEL	9	Unmodified	_LGPSAAQEL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.23736572265625	2	443.23745	884.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.544	1	36.544	36.044	37.044	0								0	0	0	0.11736	1	13082	13082		67.494	0	1				24251	1085	15856	15917	24589	24589					0.013495056264787308
LGPSGGGALVL	11	Unmodified	_LGPSGGGALVL_					0	0	0			REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2	REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.77667236328125	2	470.776742	939.538931	0.60267	0.00028372	-0.76335	-0.00035937	-0.16068	-7.5642E-05	470.7764097473991	32.877	0.30273	32.877	32.717	33.02	0					12	7	2	0	0	0	0.33433	1	12529	12529		58.782	0.97068	1	545860	+		24252	16590	15857	15918	24590	24590					0.0667435793156983
LGPTLLDLR	9	Unmodified	_LGPTLLDLR_					0	0	0		nc|ENSG00000174514|Q8N468-2|MFSD4A;ENSG00000174514|ENST00000367147|MFSD4A	nc|ENSG00000174514|Q8N468-2|MFSD4A	nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.30535888671875	2	499.305667	996.596781	-1.0573	-0.00052791	0.87399	0.00043639	-0.1833	-9.1525E-05	499.3061202161281	30.488	0.47352	30.488	30.309	30.782	0					36	16	3	0	0	0	0.35021	1	9994	9994		30.504	0	1	428520			24253	6494	15858	15919	24591	24591					0.09834619856985682
LGPVVMCKKAA	11	Unmodified	_LGPVVMCKKAA_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.8805236816406	3	372.880445	1115.61951	0.76129	0.00028387	-0.71769	-0.00026761	0.0436	1.6258E-05	372.88017678865225	20.285	1.4112	20.285	20.176	21.587	0					45	28	4	0	0	0	0.66983	1	6427	6427		20.03	0	1	2559900			24254	950	15859	15920	24592	24592					0.06632179658618043
LGQALGNL	8	Unmodified	_LGQALGNL_					0	0	0			REV__ENST00000526275.5_1_11:118898858-118899149:-|nuORF	REV__ENST00000526275.5_1_11:118898858-118899149:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	393.2292785644531	2	393.229428	784.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.491	1	23.491	22.991	23.991	0								0	0	0	1.7419	1	7178	7178		71.378	0	1		+		24255	14931	15860	15921	24593	24593					0.04345844180215863
LGQARVYGPN	10	Unmodified	_LGQARVYGPN_					0	0	0			REV__BRINP2|p.L486R|1|0.34|ENSG00000198797|chr1:177280633-177280633|T/G|missense_variant	REV__BRINP2|p.L486R|1|0.34|ENSG00000198797|chr1:177280633-177280633|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7868041992188	2	537.788173	1073.56179	1.4252	0.00076645	-0.95103	-0.00051145	0.47417	0.000255	537.7873933056296	26.635	0.24274	26.635	26.557	26.8	0					12	8	2	0	0	0	0.60076	1	8167	8167		34.173	0	1	193090	+		24256	12298	15861	15922	24594	24594					0.027953770490512397
LGQCSPACIL	10	Acetyl (Protein N-term),2 Carbamidomethyl (C)	_(Acetyl (Protein N-term))LGQC(Carbamidomethyl (C))SPAC(Carbamidomethyl (C))IL_	LGQC(1)SPAC(1)IL		LGQC(49)SPAC(49)IL		1	2	0		ENST00000552233.5_1_12:53818904-53819473:+|nuORF;ENST00000548303.1_1_12:53818862-53819272:+|nuORF	ENST00000552233.5_1_12:53818904-53819473:+|nuORF	ENST00000552233.5_1_12:53818904-53819473:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.7753295898438	2	580.775559	1159.53657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.236	1	33.236	32.736	33.736	0								0	0	0	0.30913	1	12707	12707		49.442	8.6634	1				24257	10595	15862	15923	24595	24595	428;429				-0.03682181860062883
LGQFCRVT	8	Unmodified	_LGQFCRVT_					0	0	0			REV__ENSG00000114638|ENST00000264234|UPK1B	REV__ENSG00000114638|ENST00000264234|UPK1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.742919921875	2	462.242012	922.469472	-0.80043	-0.00036999	-0.041857	-1.9348E-05	-0.84229	-0.00038934	462.24215282415645	31.645	0.24453	31.645	31.552	31.796	0					15	9	2	0	0	0	0.61938	1	10537	10537		45.952	0	1	136540	+		24258	14074	15863	15924	24596	24596					0.005135757111588646
LGQGRSWLLRN	11	Unmodified	_LGQGRSWLLRN_					0	0	0			REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	650.3667602539062	2	650.367653	1298.72075	0.22827	0.00014846	-1.0459	-0.00068023	-0.81765	-0.00053177	650.3669414045905	41.094	0.13506	41.094	41.052	41.187	0					9	6	2	0	0	0	0.1937	1	15630	15630		75.043	0.8783	1	71612	+		24259	14946	15864	15925	24597	24597					0.08334090677180939
LGQKPWLDQ	9	Unmodified	_LGQKPWLDQ_					0	0	0			REV__nc|ENSG00000198039|Q14593-2|ZNF273	REV__nc|ENSG00000198039|Q14593-2|ZNF273	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7933349609375	2	542.792924	1083.57129	0.31784	0.00017252	1.3242	0.00071876	1.642	0.00089129	542.7936636398864	16.188	0.26783	16.188	16.007	16.275	0					9	6	2	0	0	0	0.25716	1	4349	4349		54.776	3.4409	1	160110	+		24260	17377	15865	15926	24598	24598					0.032851453345756454
LGQKPWLDQ	9	Unmodified	_LGQKPWLDQ_					0	0	0			REV__nc|ENSG00000198039|Q14593-2|ZNF273	REV__nc|ENSG00000198039|Q14593-2|ZNF273	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.19757080078125	3	362.197708	1083.57129	0.48827	0.00017685	-0.46924	-0.00016996	0.019032	6.8934E-06	362.1973815063958	16.154	0.21684	16.154	16.047	16.263	0					10	4	3	0	0	0	0.53083	1	4574	4574		29.17	6.1276	1	252280	+		24261	17377	15865	15926	24599	24599					0.032851453345756454
LGQLIQQPV	9	Unmodified	_LGQLIQQPV_					0	0	0			REV__ENSG00000163686|ENST00000478253|ABHD6	REV__ENSG00000163686|ENST00000478253|ABHD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.29815673828125	2	498.297842	994.581131	0.23158	0.00011539	0.34666	0.00017274	0.57824	0.00028814	498.29802434824893	27.257	0.31187	27.257	27.046	27.358	0					27	12	3	0	0	0	0.51817	1	8324	8324		30.504	0.18592	1	143510	+		24262	15906	15866	15927	24600	24600					0.08362333339948691
LGQPNPFREG	10	Unmodified	_LGQPNPFREG_					0	0	0			REV__BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	REV__BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.19268798828125	3	372.192845	1113.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.443	1	29.443	28.943	29.943	0								0	0	0	0.33707	1	10786	10786		45.022	2.1579	1		+		24263	12281	15867	15928	24601	24601					0.0044707318641030724
LGQQEPVVL	9	Unmodified	_LGQQEPVVL_					0	0	0		ENST00000569717.5_1_16:71512168-71512942:-|nuORF	ENST00000569717.5_1_16:71512168-71512942:-|nuORF	ENST00000569717.5_1_16:71512168-71512942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.781494140625	2	491.782025	981.549496	-0.070627	-3.4733E-05	-0.68542	-0.00033708	-0.75604	-0.00037181	491.7817265336878	35.243	0.21441	35.243	35.172	35.387	0					27	10	3	0	0	0	0.4966	1	11538	11538		32.812	1.2826	1	312700			24264	10784	15868	15929	24602	24602					0.05798340585999995
LGREGRWP	8	Unmodified	_LGREGRWP_					0	0	0			REV__UBALD1|p.L158Wfs*66|1|0.51|ENSG00000153443|chr16:4609695-4609695|G/-|frameshift_variant	REV__UBALD1|p.L158Wfs*66|1|0.51|ENSG00000153443|chr16:4609695-4609695|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.765869140625	2	485.764501	969.514448	2.505	0.0012169	-0.36175	-0.00017573	2.1433	0.0010411	485.76463258302726	17.16	2.8142	17.16	16.859	19.673	0					138	57	5	0	0	0	0.59773	1	5054	5054		49.442	1.7842	1	2613700	+		24265	22252	15869	15930	24603	24603					0.028471425687030205
LGRELLRLA	9	Unmodified	_LGRELLRLA_					0	0	0		GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant;GRID2IP|p.S1123Lfs*62|1|0.41|ENSG00000215045|chr7:6501814-6501814|G/-|frameshift_variant;ENSG00000215045|ENST00000457091|GRID2IP;GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant	GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.55718994140625	3	347.557348	1039.65021	0.33914	0.00011787	-0.52723	-0.00018324	-0.18808	-6.537E-05	347.55708666799154	26.936	0.1659	26.936	26.828	26.994	0					6	3	2	0	0	0	0.60749	1	9712	9712		20.947	0	1	122720			24266	7824	15870	15931	24604	24604					0.13197417359515384
LGRESSPGP	9	Unmodified	_LGRESSPGP_					0	0	0		ENST00000306801.7_1_17:78939591-78939999:+|nuORF	ENST00000306801.7_1_17:78939591-78939999:+|nuORF	ENST00000306801.7_1_17:78939591-78939999:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2326354980469	2	450.232699	898.450845	-1.1859	-0.00053391	0.63608	0.00028638	-0.54978	-0.00024753	450.23296516509134	19.911	0.25189	19.911	19.842	20.093	0					19	8	4	0	0	0	0.26904	1	5465	5465		53.351	2.1588	1	2566800			24267	8524	15871	15932	24605	24605					-0.002442626590436703
LGRLGPLH	8	Unmodified	_LGRLGPLH_					0	0	0			REV__ENST00000397901.7_1_16:89712038-89712440:-|nuORF	REV__ENST00000397901.7_1_16:89712038-89712440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7666015625	2	431.766512	861.518471	-0.47199	-0.00020379	0.18972	8.1915E-05	-0.28227	-0.00012187	431.7667179741024	26.662	0.21917	26.662	26.553	26.772	0					7	4	2	0	0	0	0.66238	1	9459	9459		39.021	1.993	1	180200	+		24268	18918	15872	15933	24606	24606					0.08217232062418134
LGRLKFAS	8	Unmodified	_LGRLKFAS_					0	0	0			REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.27386474609375	2	446.27417	890.533787	-2.719	-0.0012134	2.191	0.00097779	-0.52804	-0.00023565	446.27538545629284	33.447	0.19502	33.447	33.374	33.569	0					6	5	2	0	0	0	0.7126	1	11748	11748		31.955	3.7006	1	48195	+		24269	13558	15873	15934	24607	24607					0.08414098859600472
LGRNGPTL	8	Unmodified	_LGRNGPTL_					0	0	0		ENSG00000100441|ENST00000553935|KHNYN	ENSG00000100441|ENST00000553935|KHNYN	ENSG00000100441|ENST00000553935|KHNYN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.240966796875	2	414.240327	826.466101	-1.4626	-0.00060588	1.1631	0.00048181	-0.29949	-0.00012406	414.24075733497835	24.559	0.30904	24.559	24.374	24.683	0					18	10	2	0	0	0	0.68432	1	7505	7505		35.618	3.6634	1	148320			24270	2030	15874	15935	24608	24608					0.045926489288035555
LGRRAAEAPI	10	Unmodified	_LGRRAAEAPI_					0	0	0		ENST00000296677.4_1_5:76114869-76114908:+|nuORF	ENST00000296677.4_1_5:76114869-76114908:+|nuORF	ENST00000296677.4_1_5:76114869-76114908:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.87689208984375	3	351.876969	1052.60908	-0.83926	-0.00029532	0.61158	0.0002152	-0.22768	-8.0114E-05	351.87717093011594	21.855	0.21023	21.855	21.746	21.956	0					13	6	3	0	0	0	0.64162	1	6335	6335		29.17	0.020503	1	300750			24271	8462	15875	15936	24609	24609					0.08487656320016868
LGRRAQWL	8	Unmodified	_LGRRAQWL_					0	0	0		ENSG00000153162|ENST00000283147|BMP6	ENSG00000153162|ENST00000283147|BMP6	ENSG00000153162|ENST00000283147|BMP6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2956848144531	2	500.295968	998.577383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.352	1	36.352	35.852	36.852	0								0	0	0	1.7419	1	13011	13011		26.796	0	1				24272	5041	15876	15937	24610	24610					0.07803708356743755
LGRRLPADHV	10	Unmodified	_LGRRLPADHV_					0	0	0		HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant;HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant;HECW2|p.G1392Vfs*19|1|0.22|ENSG00000138411|chr2:196220913-196220913|C/-|frameshift_variant;ENSG00000138411|ENST00000644978|HECW2	HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.3291015625	2	567.330539	1132.64652	0.4569	0.00025921	-0.74921	-0.00042505	-0.29231	-0.00016583	567.3299560008073	50.861	0.58895	50.861	50.595	51.184	0					46	36	2	0	0	0	0.74091	1	15286	15286		14.865	2.0532	1	95720			24273	4256	15877	15938	24611	24611					0.08550747585627505
LGRRRTEMI	9	Unmodified	_LGRRRTEMI_					0	0	0			REV__ENST00000373060.5_1_6:41566823-41567321:+|nuORF	REV__ENST00000373060.5_1_6:41566823-41567321:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.8854064941406	3	377.885358	1130.63425	0.23132	8.7411E-05	-0.40128	-0.00015164	-0.16997	-6.4228E-05	377.8851521828714	24.123	1.4044	24.123	23.294	24.698	0					67	32	3	0	0	0	0.50858	1	8088	8088		31.53	3.6476	1	259290	+		24274	18679	15878	15939	24612	24612					0.07415387850960542
LGRSLGPGGRR	11	Unmodified	_LGRSLGPGGRR_					0	0	0		ENST00000216373.9_1_14:50671095-50698242:-|nuORF	ENST00000216373.9_1_14:50671095-50698242:-|nuORF	ENST00000216373.9_1_14:50671095-50698242:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.8924560546875	3	375.891501	1124.65267	3.2465	0.0012204	-0.75341	-0.0002832	2.4931	0.00093715	375.89121694190163	24.987	0.20944	24.987	24.884	25.093	0					6	4	2	0	0	0	0.60833	1	8705	8705		36.318	5.7488	1	727030			24275	8164	15879	15940	24613	24613					0.09533265817185566
LGRVSHIKDF	10	Unmodified	_LGRVSHIKDF_					0	0	0		nc|ENSG00000173960|P68543-2|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2251892089844	3	391.224257	1170.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.643	1	42.643	42.143	43.143	0								0	0	0	0.4201	1	16135	16135		21.686	5.679	1				24276	11651	15880	15941	24614	24614					0.07244212008549766
LGRVSLELHI	10	Unmodified	_LGRVSLELHI_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000578830.5_1_17:73221901-73228130:+|nuORF;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.5642395019531	3	379.564391	1135.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.377	1	22.377	21.877	22.877	0								0	0	0	0.38475	1	6576	6576		35.152	1.2304	1				24277	3415	15881	15942	24615	24615					0.10893382668359664
LGSALLGWGA	10	Unmodified	_LGSALLGWGA_					0	0	0		ENST00000542868.1_1_12:6950213-6950600:+|nuORF	ENST00000542868.1_1_12:6950213-6950600:+|nuORF	ENST00000542868.1_1_12:6950213-6950600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7621154785156	2	472.763635	943.512717	-1.4947	-0.00070663	1.6257	0.00076857	0.13103	6.1946E-05	472.76443094612216	27.99	0.33363	27.99	27.877	28.211	0					23	12	3	0	0	0	0.2897	1	8958	8958		68.485	2.0554	1	356760			24278	10554	15882	15943	24616	24616					0.03870088760083945
LGSALLGWGA	10	Unmodified	_LGSALLGWGA_					0	0	0		ENST00000542868.1_1_12:6950213-6950600:+|nuORF	ENST00000542868.1_1_12:6950213-6950600:+|nuORF	ENST00000542868.1_1_12:6950213-6950600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7629699707031	2	472.763635	943.512717	0.59389	0.00028077	-0.48907	-0.00023122	0.10482	4.9554E-05	472.7633565972296	28.232	0.53501	28.232	27.947	28.482	0					25	11	5	0	0	0	0.31306	1	10308	10308		65.803	5.5092	1	1752900			24279	10554	15882	15943	24617	24617					0.03870088760083945
LGSAPLRK	8	Unmodified	_LGSAPLRK_					0	0	0			REV__ENST00000373381.8_2_1:33999406-34006153:-|nuORF	REV__ENST00000373381.8_2_1:33999406-34006153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.26611328125	2	421.266345	840.518136	0.85656	0.00036084	-0.99833	-0.00042056	-0.14177	-5.9722E-05	421.2659628510155	20.772	0.2678	20.772	20.612	20.88	0					13	5	3	0	0	0	0.60719	1	6823	6823		47.916	3.3845	1	1542500	+		24280	18681	15883	15944	24618	24618					0.09149812342559471
LGSASVVAEL	10	Unmodified	_LGSASVVAEL_					0	0	0			REV__ENST00000537726.5_1_15:80454796-80454856:+|nuORF	REV__ENST00000537726.5_1_15:80454796-80454856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2632141113281	2	473.266207	944.517862	-1.5373	-0.00072754	-1.8975	-0.00089801	-3.4348	-0.0016256	473.2650045541699	33.438	0.22978	33.438	33.341	33.571	0					14	9	2	0	0	0	0.44469	1	11196	11196		51.335	6.8044	1	87411	+		24281	20114	15884	15945	24619	24619					0.04338347832049294
LGSDIKGNT	9	Unmodified	_LGSDIKGNT_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7402038574219	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.148	1	21.148	20.648	21.648	0								0	0	0	0.018211	1	6837	6837		101.6	0.14086	1				24282	4488	15885	15946	24620	24620					0.010566041381480318
LGSERLLGV	9	Unmodified	_LGSERLLGV_					0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.27801513671875	2	472.282192	942.549831	-0.023574	-1.1134E-05	-2.0245	-0.00095613	-2.0481	-0.00096727	472.28067569380113	33.593	0.4067	33.593	33.313	33.719	0					28	14	3	0	0	0	0.26904	1	10913	10913		53.351	0.41475	1	703640	+		24283	17517	15886	15947	24621	24621					0.0762576030585933
LGSGKVIKG	9	Unmodified	_LGSGKVIKG_					0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-3|FKBP15;FKBP15|p.K665Rfs*9|2|0.21|ENSG00000119321|chr9:113178722-113178722|T/-|frameshift_variant	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7740478515625	2	429.774003	857.533452	-0.28814	-0.00012384	0.54186	0.00023288	0.25372	0.00010904	429.7743478400124	18.409	0.11534	18.409	18.335	18.45	0					6	3	2	0	0	0	0.25716	1	4807	4807		54.776	1.4249	1	114830			24284	3107	15887	15948	24622	24622					0.09898679139746491
LGSGKVIKG	9	Unmodified	_LGSGKVIKG_					0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-3|FKBP15;FKBP15|p.K665Rfs*9|2|0.21|ENSG00000119321|chr9:113178722-113178722|T/-|frameshift_variant	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7739562988281	2	429.774003	857.533452	-0.44123	-0.00018963	0.19689	8.4617E-05	-0.24434	-0.00010501	429.77410929542333	18.581	0.16488	18.581	18.471	18.636	0					5	3	2	0	0	0	0.0792	1	5599	5599		84.916	5.2029	1	893300			24285	3107	15887	15948	24623	24623					0.09898679139746491
LGSGLGRLA	9	Unmodified	_LGSGLGRLA_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.2562255859375	2	422.255977	842.497401	0.37765	0.00015946	-0.74122	-0.00031298	-0.36357	-0.00015352	422.255800221044	24.999	0.17623	24.999	24.92	25.096	0					22	5	5	0	0	0	0.0792	1	7452	7452		84.916	2.6105	1	672350	+		24286	15479	15888	15949	24624	24624					0.06985221962895594
LGSGLGRLA	9	Unmodified	_LGSGLGRLA_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2558288574219	2	422.255977	842.497401	-1.1994	-0.00050645	0.89317	0.00037715	-0.30621	-0.0001293	422.2563078087304	25.041	0.22936	25.041	24.967	25.196	0					13	7	3	0	0	0	0.17854	1	7739	7739		64.207	3.2353	1	208250	+		24287	15479	15888	15949	24625	24625					0.06985221962895594
LGSKHSSATY	10	Unmodified	_LGSKHSSATY_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7664794921875	2	525.764363	1049.51417	3.45	0.0018139	1.0506	0.00055236	4.5006	0.0023663	525.7648403359251	36.656	0.16808	36.656	36.545	36.713	0					6	3	2	0	0	0	0.50881	1	14275	14275		44.377	3.599	1	775910			24288	4996	15889	15950	24626	24626					-0.008603219417864238
LGSLEVGVSL	10	Unmodified	_LGSLEVGVSL_					0	0	0		ENST00000474033.5_1_1:1288405-1288789:-|nuORF	ENST00000474033.5_1_1:1288405-1288789:-|nuORF	ENST00000474033.5_1_1:1288405-1288789:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2879943847656	2	487.281857	972.549162	2.5536	0.0012443	-1.4492	-0.00070617	1.1044	0.00053813	487.2815482059971	35.356	0.57156	35.356	35.245	35.817	0					21	11	3	0	0	0	0.16018	1	13798	13798		84.916	10.66	1	5842300			24289	9889	15890	15951	24627	24627					0.06178920866148019
LGSLPALLSH	10	Unmodified	_LGSLPALLSH_					0	0	0			REV__ENST00000259241.6_1_2:129025165-129025384:-|nuORF	REV__ENST00000259241.6_1_2:129025165-129025384:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5345458984375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.469	1	27.469	26.969	27.969	0								0	0	0	0.4201	1	8990	8990		15.333	0	1		+		24290	18001	15891	15952	24628	24628					0.07810333339955378
LGSLSATSQQ	10	Unmodified	_LGSLSATSQQ_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2895812988281	2	496.256371	990.498189	-0.060897	-3.022E-05	-0.21657	-0.00010747	-0.27746	-0.00013769	496.2561998063049	21.986	0.28473	21.986	21.906	22.19	0					18	8	3	0	0	0	0.67464	1	6119	6119		14.137	7.8245	1	1151000			24291	4009	15892	15953	24629	24629					0.0025597182128649365
LGSMLAIVIA	10	Unmodified	_LGSMLAIVIA_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.3006591796875	2	494.298996	986.583439	2.7998	0.0013839	0.82276	0.00040669	3.6226	0.0017906	494.29938599222135	16.771	0.16206	16.771	16.666	16.828	0					7	3	3	0	0	0	0.40673	1	4725	4725		55.504	0.73953	1	1924200	+		24292	17104	15893	15954	24630	24630					0.08961045753380859
LGSNRRPLQ	9	Unmodified	_LGSNRRPLQ_					0	0	0			REV__ENST00000528672.1_1_11:35223289-35229672:+|nuORF	REV__ENST00000528672.1_1_11:35223289-35229672:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.8031005859375	2	520.801614	1039.58868	3.3809	0.0017608	-0.72273	-0.0003764	2.6582	0.0013844	520.8013892772641	27.079	0.3207	27.079	26.968	27.289	0					25	6	6	0	0	0	0.099922	1	9660	9660		79.451	10.664	1	4458400	+		24293	20020	15894	15955	24631	24631					0.07046485660225699
LGSPWRPH	8	Unmodified	_LGSPWRPH_					0	0	0		ENST00000524249.5_1_2:46768823-46769105:-|nuORF	ENST00000524249.5_1_2:46768823-46769105:-|nuORF	ENST00000524249.5_1_2:46768823-46769105:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2506103515625	2	475.253769	948.492984	-2.6632	-0.0012657	-3.5053	-0.0016659	-6.1685	-0.0029316	475.2516349631841	30.286	0.12525	30.286	30.21	30.335	0					6	3	2	0	0	0	0.52345	1	10304	10304		57.811	13.434	1	88247			24294	10341	15895	15956	24632	24632					0.016677575399853595
LGSQVGGAM	9	Unmodified	_LGSQVGGAM_					0	0	0		ENST00000441344.1_1_2:110551979-110561026:+|nuORF	ENST00000441344.1_1_2:110551979-110561026:+|nuORF	ENST00000441344.1_1_2:110551979-110561026:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.2049255371094	2	410.205096	818.395638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.092	1	33.092	32.592	33.592	0								0	0	0	0.30504	1	12636	12636		34.173	1.3601	1				24295	9576	15896	15957	24633	24633					-0.020823924511546466
LGSRASPGPAG	11	Unmodified	_LGSRASPGPAG_					0	0	0			REV__ENST00000315127.8_2_15:74967332-74988282:-|nuORF	REV__ENST00000315127.8_2_15:74967332-74988282:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2556457519531	2	485.259248	968.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.178	1	17.178	16.678	17.678	0								0	0	0	0.39691	1	4229	4229		37.812	3.639	1		+		24296	18295	15897	15958	24634	24634					0.018431151236200094
LGSRGRRR	8	Unmodified	_LGSRGRRR_					0	0	0		SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;SHANK1|p.T693Pfs*33|2|0.23|ENSG00000161681|chr19:50688940-50688940|G/-|frameshift_variant	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;REV__ENSG00000257008|ENST00000582579|GPR142	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2951965332031	2	479.294291	956.574029	-0.00088479	-4.2408E-07	1.858	0.00089051	1.8571	0.00089008	479.29518707766294	22.468	0.20953	22.468	22.384	22.594	0					12	6	3	0	0	0	0.46905	1	6360	6360		63.306	1.1989	1	306220			24297	5420;17763	15898	15959	24635	24635					0.09400458302741299
LGSRGRRR	8	Unmodified	_LGSRGRRR_					0	0	0		SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;SHANK1|p.T693Pfs*33|2|0.23|ENSG00000161681|chr19:50688940-50688940|G/-|frameshift_variant	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;REV__ENSG00000257008|ENST00000582579|GPR142	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.29534912109375	2	479.294291	956.574029	2.2854	0.0010954	-0.23153	-0.00011097	2.0539	0.00098443	479.29417747777643	22.713	0.26664	22.713	22.605	22.872	0					12	5	4	0	0	0	0.37378	1	7606	7606		73.975	5.49	1	1319900			24298	5420;17763	15898	15959	24636	24636					0.09400458302741299
LGSRMHCI	8	Unmodified	_LGSRMHCI_					0	0	0		ENST00000438393.5_1_22:50167190-50167259:-|nuORF	ENST00000438393.5_1_22:50167190-50167259:-|nuORF	ENST00000438393.5_1_22:50167190-50167259:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7295227050781	2	458.728215	915.441877	2.5123	0.0011525	0.58101	0.00026653	3.0933	0.001419	458.7284894829044	24.987	0.4083	24.987	24.787	25.196	0					19	8	3	0	0	0	0.54629	1	8682	8682		55.504	55.504	1	1592500			24299	9549	15899	15960	24637	24637					-0.01922650820722538
LGSRSMAP	8	Unmodified	_LGSRSMAP_					0	0	0		ENST00000460783.1_1_21:38071452-38071680:+|nuORF	ENST00000460783.1_1_21:38071452-38071680:+|nuORF	ENST00000460783.1_1_21:38071452-38071680:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.7131652832031	2	409.713088	817.411622	-0.49822	-0.00020413	0.26551	0.00010878	-0.23271	-9.5346E-05	409.7132778075654	20.896	0.3669	20.896	20.743	21.11	0					20	7	4	0	0	0	0.76283	1	6727	6727		25.45	0	1	599950			24300	9723	15900	15961	24638	24638					-0.004386862142609971
LGSRTLGSAAL	11	Unmodified	_LGSRTLGSAAL_					0	0	0		ENST00000378246.6_1_10:14996005-14996065:-|nuORF	ENST00000378246.6_1_10:14996005-14996065:-|nuORF	ENST00000378246.6_1_10:14996005-14996065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.8059692382812	2	523.303655	1044.59276	1.6251	0.00085042	-0.011644	-6.0932E-06	1.6134	0.00084432	523.3036255574532	49.753	0.39433	49.753	49.532	49.926	0					25	17	2	0	0	0	0.51875	1	19614	19614		42.864	2.0861	1	53413			24301	9066	15901	15962	24639	24639					0.07224530363282611
LGSTIDKAT	9	Unmodified	_LGSTIDKAT_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;ENST00000482438.2_1_3:49141637-49142166:-|nuORF;ENST00000479495.5_1_3:49140063-49142467:-|nuORF;nc|ENSG00000172053|P47897-2|QARS1	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25048828125	2	453.250557	904.486562	0.87721	0.0003976	-1.1643	-0.00052773	-0.28712	-0.00013014	453.2500584292705	15.489	0.10034	15.489	15.445	15.546	0					6	2	3	0	0	0	0.54267	1	4109	4109		27.882	3.6795	1	463210			24302	6343	15902	15963	24640	24640					0.030497747979552514
LGSVAPLFL	9	Unmodified	_LGSVAPLFL_					0	0	0			REV__nc|ENSG00000240303|Q709F0-3|ACAD11	REV__nc|ENSG00000240303|Q709F0-3|ACAD11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.77685546875	2	458.778754	915.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.925	1	23.925	23.425	24.425	0								0	0	0	0.24438	1	7252	7252		44.531	0	1		+		24303	17680	15903	15964	24641	24641					0.08180447425263537
LGSVERFSR	9	Unmodified	_LGSVERFSR_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7861328125	2	525.788173	1049.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.572	1	40.572	40.072	41.072	0								0	0	0	0.23445	1	15468	15468		45.972	3.108	1		+		24304	21273	15904	15965	24642	24642					0.03899377049060604
LGSVPGGL	8	Unmodified	_LGSVPGGL_					0	0	0			REV__PMEL|p.M184Pfs*4|1|0.28|ENSG00000185664|chr12:55958005-55958006|-/GT|frameshift_variant	REV__PMEL|p.M184Pfs*4|1|0.28|ENSG00000185664|chr12:55958005-55958006|-/GT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.20623779296875	2	350.205421	698.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.996	1	48.996	48.496	49.496	0								0	0	0	1.7419	1	19427	19427		31.579	1.7373	1		+		24305	17040	15905	15966	24643	24643					0.03502770260206489
LGSVRRKR	8	Unmodified	_LGSVRRKR_					0	0	0			REV__ENST00000558521.5_3_15:85189295-85189567:-|nuORF	REV__ENST00000558521.5_3_15:85189295-85189567:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.31597900390625	2	486.314692	970.614831	2.5219	0.0012264	-0.047779	-2.3235E-05	2.4741	0.0012032	486.3146866392957	18.001	0.30815	18.001	17.851	18.159	0					11	6	3	0	0	0	0.5676	1	5314	5314		42.474	42.474	1	826230	+		24306	19196	15906	15967	24644	24644					0.12834799622373794
LGTASLRAK	9	Unmodified	_LGTASLRAK_					0	0	0			REV__ENST00000554578.5_1_12:57637331-57638104:-|nuORF	REV__ENST00000554578.5_1_12:57637331-57638104:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7828063964844	2	458.782359	915.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.614	1	16.614	16.114	17.114	0								0	0	0	0.22284	1	4023	4023		47.657	5.2612	1		+		24307	20235	15907	15968	24645	24645					0.08901180025702615
LGTGLRAGV	9	Unmodified	_LGTGLRAGV_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENSG00000131730|ENST00000254035|CKMT2;ENST00000437534.3_1_15:43890378-43891468:+|nuORF;ENSG00000223572|ENST00000413453|CKMT1A;ENSG00000237289|ENST00000441322|CKMT1B;nc|ENSG00000237289|P12532-2|CKMT1A	ENSG00000166165|ENST00000348956|CKB;ENSG00000223572|ENST00000413453|CKMT1A	ENSG00000166165|ENST00000348956|CKB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2554626464844	2	422.255977	842.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.115	1	23.115	22.615	23.615	0								0	0	0	0.30504	1	7001	7001		34.173	0	1				24308	5864;7859	15908	15969	24646	24646					0.06985221962906962
LGTGSWLPT	9	Unmodified	_LGTGSWLPT_					0	0	0		ENST00000439587.6_1_9:35835156-35841170:+|nuORF	ENST00000439587.6_1_9:35835156-35841170:+|nuORF	ENST00000439587.6_1_9:35835156-35841170:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2482604980469	2	466.247818	930.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.317	1	39.317	38.817	39.817	0								0	0	0	0.24724	1	12775	12775		44.117	7.0883	1				24309	9565	15909	15970	24647	24647					0.013060960061352489
LGTLLAKGAH	10	Unmodified	_LGTLLAKGAH_					0	0	0			REV__ENSG00000183044|ENST00000268251|ABAT	REV__ENSG00000183044|ENST00000268251|ABAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7983093261719	2	490.798009	979.581465	0.60653	0.00029768	0.0070611	3.4656E-06	0.61359	0.00030115	490.79786228871313	35.316	0.28683	35.316	35.201	35.488	0					16	10	2	0	0	0	0.64178	1	12568	12568		29.15	4.9468	1	115580	+		24310	16911	15910	15971	24648	24648					0.09085753059798662
LGTLLIAHD	9	Unmodified	_LGTLLIAHD_					0	0	0			REV__ENSG00000145536|ENST00000274181|ADAMTS16	REV__ENSG00000145536|ENST00000274181|ADAMTS16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.77642822265625	2	476.776742	951.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.278	1	38.278	37.778	38.778	0								0	0	0	0.24724	1	12492	12492		44.117	0	1		+		24311	15277	15911	15972	24649	24649					0.06122357931553779
LGTLLLHE	8	Unmodified	_LGTLLLHE_					0	0	0			REV__ENSG00000196666|ENST00000538490|FAM180B	REV__ENSG00000196666|ENST00000538490|FAM180B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.26409912109375	2	448.26601	894.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.692	1	19.692	19.192	20.192	0								0	0	0	1.7419	1	5397	5397		28.254	4.0515	1		+		24312	17282	15912	15973	24650	24650					0.06598972902850164
LGTNIKDL	8	Unmodified	_LGTNIKDL_					0	0	0		nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1;SLCO6A1|p.F525Vfs*12|1|0.2|ENSG00000205359|chr5:102413043-102413044|-/C|frameshift_variant	nc|ENSG00000205359|Q86UG4-2|SLCO6A1	nc|ENSG00000205359|Q86UG4-2|SLCO6A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.25579833984375	2	437.255643	872.496732	-0.2783	-0.00012169	-0.11879	-5.1942E-05	-0.39709	-0.00017363	437.2557309240276	31.39	0.13569	31.39	31.31	31.446	0					8	5	2	0	0	0	0.68432	1	10098	10098		35.618	0	1	38614			24313	7748	15913	15974	24651	24651					0.055383825231729134
LGTPHGSAM	9	Unmodified	_LGTPHGSAM_					0	0	0			REV__tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	REV__tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.2123107910156	2	435.710545	869.406537	0.22428	9.7721E-05	-1.1413	-0.00049726	-0.91699	-0.00039954	435.71021226974875	22.36	0.32043	22.36	22.19	22.511	0					15	9	3	0	0	0	0.5654	1	6289	6289		25.45	0	1	127590	+		24314	21924	15914	15975	24652	24652					-0.033389900768725056
LGTPHGSAM	9	Unmodified	_LGTPHGSAM_					0	0	0			REV__tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	REV__tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.7102966308594	2	435.710545	869.406537	0.66082	0.00028793	-1.3218	-0.00057594	-0.66102	-0.00028801	435.71001397572644	22.715	0.50645	22.715	22.474	22.98	0					26	12	3	0	0	0	0.16524	1	7421	7421		65.803	10.299	1	826030	+		24315	21924	15914	15975	24653	24653					-0.033389900768725056
LGTPHGSAM	9	Unmodified	_LGTPHGSAM_					0	0	0			REV__tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	REV__tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.7105712890625	2	435.710545	869.406537	-0.53582	-0.00023346	-0.062801	-2.7363E-05	-0.59862	-0.00026083	435.7105839830643	22.597	0.4685	22.597	22.337	22.805	0					20	9	3	0	0	0	0.30268	1	7506	7506		50.025	9.4519	1	550530	+		24316	21924	15914	15975	24654	24654					-0.033389900768725056
LGTRGMASR	9	Unmodified	_LGTRGMASR_					0	0	0		nc|ENSG00000146729|O75323-2|NIPSNAP2	nc|ENSG00000146729|O75323-2|NIPSNAP2	nc|ENSG00000146729|O75323-2|NIPSNAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7543029785156	2	474.755818	947.497083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.528	1	17.528	17.028	18.028	0								0	0	0	0.28666	1	4388	4388		37.812	0.65241	1				24317	11574	15915	15976	24655	24655					0.02123478971395798
LGTRQTVT	8	Unmodified	_LGTRQTVT_					0	0	0			REV__ENST00000306243.6_1_15:40764549-40764810:+|nuORF	REV__ENST00000306243.6_1_15:40764549-40764810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2508239746094	2	438.250892	874.48723	0.30652	0.00013433	-0.78912	-0.00034583	-0.4826	-0.0002115	438.2505075612636	19.075	0.10077	19.075	18.992	19.093	0					4	2	2	0	0	0	0.59411	1	5104	5104		50.025	2.3672	1	71641	+		24318	18245	15916	15977	24656	24656					0.04496614237677932
LGTSALRFH	9	Unmodified	_LGTSALRFH_					0	0	0		ENST00000398810.6_1_7:50659566-50659797:-|nuORF	ENST00000398810.6_1_7:50659566-50659797:-|nuORF	ENST00000398810.6_1_7:50659566-50659797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2802429199219	2	501.279983	1000.54541	0.029042	1.4558E-05	-0.33239	-0.00016662	-0.30335	-0.00015206	501.27988966214593	31.98	0.20332	31.98	31.861	32.064	0					7	4	2	0	0	0	0.32741	1	12117	12117		47.916	3.7988	1	55482			24319	9233	15917	15978	24657	24657					0.04516295882945087
LGTSKLQP	8	Unmodified	_LGTSKLQP_					0	0	0		nc|ENSG00000188086|Q7RTY3-2|PRSS45P;nc|ENSG00000188086|Q7RTY3|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.24951171875	2	422.25036	842.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.085	1	32.085	31.585	32.585	0								0	0	0	1.7419	1	12162	12162		60.972	2.19	1				24320	11696	15918	15979	24658	24658					0.05862399868760804
LGTWKRHA	8	Unmodified	_LGTWKRHA_					0	0	0		CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant;ENSG00000186714|ENST00000335185|CCDC73;CCDC73|p.E448Kfs*5|1|0.13|ENSG00000186714|chr11:32615974-32615974|T/-|frameshift_variant;nc|ENSG00000186714|Q6ZRK6-2|CCDC73;CCDC73|p.S466Kfs*5|1|0.27|ENSG00000186714|chr11:32614921-32614922|-/T|frameshift_variant;CCDC73|p.N638Ifs*18|1|0.36|ENSG00000186714|chr11:32614405-32614405|T/-|frameshift_variant;CCDC73|p.S672Vfs*22|1|0.26|ENSG00000186714|chr11:32614304-32614304|T/-|frameshift_variant;CCDC73|p.T895Lfs*8|1|0.13|ENSG00000186714|chr11:32613635-32613635|T/-|frameshift_variant	CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant	CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	323.5184631347656	3	323.519004	967.535184	-1.9067	-0.00061687	0.76412	0.00024721	-1.1426	-0.00036966	323.5192429983002	15.744	0.10811	15.744	15.686	15.794	0					8	4	2	0	0	0	0.79719	1	3584	3584		18.324	0	1	352340			24321	413	15919	15980	24659	24659					0.05011732948366898
LGVATIIADG	10	Unmodified	_LGVATIIADG_					0	0	0			REV__nc|ENSG00000164007|Q8N6F1-2|CLDN19	REV__nc|ENSG00000164007|Q8N6F1-2|CLDN19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2682189941406	2	465.26875	928.522947	0.51082	0.00023767	-0.81807	-0.00038062	-0.30724	-0.00014295	465.26811090400787	33.461	0.24858	33.461	33.26	33.508	0					8	6	2	0	0	0	0.39566	1	12351	12351		56.721	1.9447	1	147960	+		24322	15946	15920	15981	24660	24660					0.055826516946467564
LGVAWAWF	8	Unmodified	_LGVAWAWF_					0	0	0			REV__ENST00000577700.5_1_7:45022669-45022849:-|nuORF	REV__ENST00000577700.5_1_7:45022669-45022849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2510681152344	2	475.250163	948.485774	-0.42463	-0.00020181	2.1021	0.000999	1.6774	0.0007972	475.25111972935144	30.254	0.25814	30.254	30.145	30.403	0					10	6	2	0	0	0	0.63381	1	10293	10293		43.626	1.2299	1	88371	+		24323	20429	15921	15982	24661	24661					0.009470249395576502
LGVFLAPLV	9	Unmodified	_LGVFLAPLV_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7950134277344	2	464.796946	927.57934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.986	1	27.986	27.486	28.486	0								0	0	0	0.21213	1	9229	9229		49.211	10.189	1		+		24324	13108	15922	15983	24662	24662					0.11265324321971093
LGVGALRCIIK	11	Unmodified	_LGVGALRCIIK_					0	0	0			REV__ENST00000559934.5_1_15:78834413-78834578:+|nuORF	REV__ENST00000559934.5_1_15:78834413-78834578:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.2398681640625	3	381.574121	1141.70053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.958	1	25.958	25.458	26.458	0								0	0	0	0.39826	1	7832	7832		37.508	7.1905	1		+		24325	20280	15923	15984	24663	24663					0.13535203693004405
LGVGVGPQK	9	Unmodified	_LGVGVGPQK_					0	0	0			REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.7581481933594	2	427.758352	853.502152	0.24788	0.00010603	0.26681	0.00011413	0.5147	0.00022017	427.7584622784355	22.099	0.14995	22.099	22.023	22.173	0					7	4	2	0	0	0	0.49003	1	6193	6193		33.516	0	1	80989	+		24326	17080	15924	15985	24664	24664					0.0695410610566114
LGVHSKIT	8	Unmodified	_LGVHSKIT_					0	0	0		TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.758056640625	2	427.758352	853.502152	-0.17037	-7.2878E-05	-0.25974	-0.00011111	-0.43011	-0.00018398	427.7582903423194	22.162	0.23026	22.162	22.074	22.304	0					7	5	2	0	0	0	0.49887	1	6565	6565		60.294	7.9948	1	121590			24327	23060	15925	15986	24665	24665					0.06954106105649771
LGVLYNFLI	9	Unmodified	_LGVLYNFLI_					0	0	0			REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.3091430664062	2	526.312961	1050.61137	0.61019	0.00032115	-3.6873	-0.0019407	-3.0771	-0.0016195	526.3109336905632	37.806	0.29777	37.806	37.708	38.005	0					13	6	3	0	0	0	0.4966	1	14872	14872		18.324	0	1	280960	+		24328	15231	15926	15987	24666	24666					0.08808692005140983
LGVQGRANK	9	Unmodified	_LGVQGRANK_					0	0	0			REV__ENSG00000071051|ENST00000233154|NCK2	REV__ENSG00000071051|ENST00000233154|NCK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7772216796875	2	471.777608	941.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.676	1	13.676	13.176	14.176	0								0	0	0	0.10121	1	3165	3165		71.296	5.4925	1		+		24329	13184	15927	15988	24667	24667					0.06755411740175532
LGVQSPTFC	9	Unmodified	_LGVQSPTFC_					0	0	0		ENST00000445118.6_1_1:792787-792877:+|nuORF	ENST00000445118.6_1_1:792787-792877:+|nuORF	ENST00000445118.6_1_1:792787-792877:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2345886230469	2	476.233853	950.453153	0.77478	0.00036898	3.3374	0.0015894	4.1122	0.0019583	476.23542547519094	42.861	0.18564	42.861	42.774	42.96	0					10	6	2	0	0	0	0.47038	1	17131	17131		35.618	2.1027	1	45531			24330	9611	15928	15989	24668	24668					-0.02405550245600807
LGVRARGAAPG	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LGVRARGAAPG_					1	0	0		ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8123168945312	2	533.809439	1065.60433	3.3876	0.0018083	1.471	0.00078522	4.8586	0.0025936	533.8105234961876	30.806	0.26527	30.806	30.697	30.962	0					14	5	4	0	0	0	0.35272	1	11437	11437		56.721	6.6965	1	1902700			24331	10392	15929	15990	24669	24669					0.07414772177276063
LGVREPQQ	8	Unmodified	_LGVREPQQ_					0	0	0		ENST00000305321.4_1_16:30205331-30205436:-|nuORF	ENST00000305321.4_1_16:30205331-30205436:-|nuORF	ENST00000305321.4_1_16:30205331-30205436:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.756103515625	2	463.756341	925.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.727	1	14.727	14.227	15.227	0								0	0	0	1.7419	1	3728	3728		73.975	8.1716	1				24332	8512	15930	15991	24670	24670					0.03240016611948704
LGVRGVREL	9	Unmodified	_LGVRGVREL_					0	0	0		ENST00000394430.5_1_11:64511414-64511849:-|nuORF	ENST00000394430.5_1_11:64511414-64511849:-|nuORF	ENST00000394430.5_1_11:64511414-64511849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.5428161621094	3	333.541697	997.603263	3.0102	0.001004	0.76821	0.00025623	3.7784	0.0012603	333.54192941338914	31.106	0.85371	31.106	30.898	31.751	0					38	17	3	0	0	0	0.40353	1	11577	11577		41.427	1.3684	1	1745900			24333	9175	15931	15992	24671	24671					0.10436557808372982
LGVRTILTL	9	Unmodified	_LGVRTILTL_					0	0	0			REV__nc|ENSG00000123146|P48960-2|ADGRE5	REV__nc|ENSG00000123146|P48960-2|ADGRE5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.21124267578125	3	329.218332	984.633166	0.002482	8.1711E-07	0.12356	4.0679E-05	0.12604	4.1496E-05	329.21834341402536	14.617	0.16863	14.617	14.457	14.626	0					8	3	3	0	0	0	0.61124	1	3618	3618		26.693	8.4308	1	723010	+		24334	14353	15932	15993	24672	24672					0.1402349675371397
LGVTEKYESM	10	Unmodified	_LGVTEKYESM_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.5234375	3	386.190002	1155.54818	-1.1817	-0.00045637	-1.5795	-0.00060997	-2.7612	-0.0010663	386.1894031968283	22.864	0.62698	22.864	22.748	23.374	0					32	21	2	0	0	0	0.64178	1	6820	6820		27.047	4.4677	1	68457	+		24335	17610	15933	15994	24673	24673					-0.023376615650931853
LGVTVEVVQ	9	Unmodified	_LGVTVEVVQ_					0	0	0			REV__CHRNA1|p.I123Ffs*67|2|0.31|ENSG00000138435|chr2:174757618-174757618|T/-|frameshift_variant	REV__CHRNA1|p.I123Ffs*67|2|0.31|ENSG00000138435|chr2:174757618-174757618|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.3182067871094	2	472.276575	942.538597	-0.58969	-0.0002785	1.5784	0.00074543	0.98869	0.00046694	472.2774391771002	15.693	0.33587	15.693	15.439	15.775	0					10	8	2	0	0	0	0.22377	1	4020	4020		58.782	0	1	1135000	+		24336	12493	15934	15995	24674	24674					0.06502938211713172
LGVWRGAW	8	Unmodified	_LGVWRGAW_					0	0	0		ENST00000520584.5_1_8:144331869-144331947:+|nuORF	ENST00000520584.5_1_8:144331869-144331947:+|nuORF	ENST00000520584.5_1_8:144331869-144331947:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.25909423828125	2	472.758687	943.502821	2.4189	0.0011436	-0.085816	-4.057E-05	2.3331	0.001103	472.7599798407673	14.708	0.42019	14.708	14.575	14.995	0					15	8	4	0	0	0	0.61433	1	3724	3724		46.766	2.2354	1	719750			24337	10301	15935	15996	24675	24675					0.028809455453711053
LGWACLRLL	9	Unmodified	_LGWACLRLL_					0	0	0			REV__ENSG00000009830|ENST00000261534|POMT2	REV__ENSG00000009830|ENST00000261534|POMT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.873046875	3	348.872279	1043.59501	1.4818	0.00051695	0.78004	0.00027214	2.2618	0.00078909	348.8725185943948	24.715	0.30397	24.715	24.565	24.869	0					13	6	3	0	0	0	0.55282	1	8575	8575		34.173	34.173	1	933200	+		24338	12886	15936	15997	24676	24676					0.07495287567371633
LGWIRIVVM	9	Unmodified	_LGWIRIVVM_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8885803222656	3	362.887929	1085.64196	0.47864	0.00017369	1.6049	0.0005824	2.0835	0.00075609	362.88851163907844	18.469	0.27465	18.469	18.326	18.6	0					10	6	2	0	0	0	0.43174	1	5414	5414		45.952	3.6139	1	1379000	+		24339	16606	15937	15998	24677	24677					0.10256147118502668
LGWLCPQA	8	Unmodified	_LGWLCPQA_					0	0	0		TNXB|p.R862C|1|0.23|ENSG00000168477|chr6:32088980-32088980|G/A|missense_variant	TNXB|p.R862C|1|0.23|ENSG00000168477|chr6:32088980-32088980|G/A|missense_variant	TNXB|p.R862C|1|0.23|ENSG00000168477|chr6:32088980-32088980|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.72802734375	2	444.225831	886.437109	-0.48569	-0.00021576	2.9164	0.0012955	2.4307	0.0010798	444.2271152782553	16.447	0.26755	16.447	16.259	16.527	0					12	7	2	0	0	0	0.66238	1	3897	3897		39.021	0	1	47285			24340	22555	15938	15999	24678	24678					-0.01065211691843615
LGWTEPVPF	9	Unmodified	_LGWTEPVPF_					0	0	0			REV__nc|nan|Q96HA4-5|C1orf159	REV__nc|nan|Q96HA4-5|C1orf159	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2718505859375	2	523.271293	1044.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.582	1	18.582	18.082	19.082	0								0	0	0	0.19085	1	4646	4646		52.299	15.852	1		+		24341	19547	15939	16000	24679	24679					0.007549555572722966
LGYHRGWA	8	Unmodified	_LGYHRGWA_					0	0	0			REV__ABCF3|p.R205H|1|0.29|ENSG00000161204|chr3:184188185-184188185|G/A|missense_variant	REV__ABCF3|p.R205H|1|0.29|ENSG00000161204|chr3:184188185-184188185|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2463684082031	2	480.245944	958.477334	-0.64611	-0.00031029	1.8379	0.00088264	1.1918	0.00057235	480.24682060076884	36.888	0.31293	36.888	36.727	37.04	0					11	6	2	0	0	0	0.61433	1	14362	14362		46.766	6.1938	1	178740	+		24342	12042	15940	16001	24680	24680					-0.003565289770676827
LGYHRKKR	8	Unmodified	_LGYHRKKR_					0	0	0			REV__ENSG00000129667|ENST00000675367|RHBDF2	REV__ENSG00000129667|ENST00000675367|RHBDF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.21685791015625	3	353.217437	1056.63048	0.7079	0.00025004	-2.3469	-0.00082896	-1.639	-0.00057891	353.21686716255186	21.988	1.793	21.988	21.823	23.616	0					86	42	5	0	0	0	0.77246	1	7236	7236		24.203	0	1	63885000	+		24343	14556	15941	16002	24681	24681					0.10443086139412117
LGYKQRNQ	8	Unmodified	_LGYKQRNQ_					0	0	0			REV__FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant	REV__FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.77362060546875	2	503.775065	1005.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.829	1	14.829	14.329	15.329	0								0	0	0	1.7419	1	3777	3777		76.847	8.0598	1		+		24344	17725	15942	16003	24682	24682					0.033031078775593414
LGYVAAGHAE	10	Unmodified	_LGYVAAGHAE_					0	0	0		nc|ENSG00000164488|Q5SW24-3|DACT2;nc|ENSG00000164488|Q5SW24-2|DACT2;ENSG00000164488|ENST00000366795|DACT2	nc|ENSG00000164488|Q5SW24-3|DACT2	nc|ENSG00000164488|Q5SW24-3|DACT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2479248046875	2	494.248349	986.482145	-0.056204	-2.7779E-05	-0.46312	-0.0002289	-0.51932	-0.00025667	494.24816051311956	28.758	0.15496	28.758	28.708	28.863	0					12	5	3	0	0	0	0.42631	1	9031	9031		53.351	7.3792	1	162700			24345	5697	15943	16004	24683	24683					-0.01163689624968356
LHALAAGF	8	Unmodified	_LHALAAGF_					0	0	0		ENST00000557803.5_1_14:102802004-102808513:+|nuORF;nc|ENSG00000022976|A8K0R7|ZNF839;ZNF839|p.Q768Rfs*33|1|0.25|ENSG00000022976|chr14:102342046-102342047|AG/-|frameshift_variant;ENSG00000022976|ENST00000442396|ZNF839	ENST00000557803.5_1_14:102802004-102808513:+|nuORF	ENST00000557803.5_1_14:102802004-102808513:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2270202636719	2	400.226688	798.438824	-0.36694	-0.00014686	0.65709	0.00026298	0.29014	0.00011612	400.22703295872367	36.445	0.2549	36.445	36.34	36.595	0					11	7	2	0	0	0	0.70073	1	13741	13741		33.493	0	1	182110			24346	1114	15944	16005	24684	24684					0.0315416538842328
LHALLTGV	8	Unmodified	_LHALLTGV_					0	0	0		tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.255615234375	2	412.255446	822.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.015	1	28.015	27.515	28.515	0								0	0	0	1.7419	1	10216	10216		20.482	0	1				24347	23050	15945	16006	24685	24685					0.0779900759400789
LHALQTFSK	9	Unmodified	_LHALQTFSK_					0	0	0			REV__ENSG00000176083|ENST00000349618|ZNF683	REV__ENSG00000176083|ENST00000349618|ZNF683	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7966918945312	2	522.795466	1043.57638	0.44862	0.00023454	0.86472	0.00045207	1.3133	0.00068661	522.795864484556	29.657	0.21568	29.657	29.549	29.764	0					9	4	3	0	0	0	0.20551	1	10881	10881		60.972	2.19	1	464230	+		24348	16640	15946	16007	24686	24686					0.056334491971938405
LHALTELVD	9	Unmodified	_LHALTELVD_					0	0	0		CEP72|p.R176Efs*23|1|0.42|ENSG00000112877|chr5:633778-633778|C/-|frameshift_variant;nc|ENSG00000112877|Q9P209-2|CEP72;ENSG00000112877|ENST00000264935|CEP72	CEP72|p.R176Efs*23|1|0.42|ENSG00000112877|chr5:633778-633778|C/-|frameshift_variant	CEP72|p.R176Efs*23|1|0.42|ENSG00000112877|chr5:633778-633778|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.77923583984375	2	505.779482	1009.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.214	1	37.214	36.714	37.714	0								0	0	0	0.1836	1	14543	14543		53.351	5.3919	1				24349	488	15947	16008	24687	24687					0.04002036723375113
LHAPDDAEQK	10	Unmodified	_LHAPDDAEQK_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.2720336914062	2	562.272552	1122.53055	0.035586	2.0009E-05	-0.52962	-0.00029779	-0.49403	-0.00027778	562.272066813965	31.646	0.20588	31.646	31.589	31.795	0					6	4	2	0	0	0	0.46215	1	11964	11964		49.442	3.4693	1	201110	+		24350	21059	15948	16009	24688	24688					-0.02581240775725746
LHAPLPQGD	9	Unmodified	_LHAPLPQGD_					0	0	0		nc|ENSG00000154803|Q8NFG4-3|FLCN;ENST00000389171.4_1_17:17129294-17135185:-|nuORF;nc|ENSG00000154803|Q8NFG4-2|FLCN;FLCN|p.H429Pfs*27|1|0.31|ENSG00000154803|chr17:17216394-17216395|-/G|frameshift_variant;FLCN|p.H429Tfs*39|2|0.24|ENSG00000154803|chr17:17216395-17216395|G/-|frameshift_variant;ENSG00000154803|ENST00000285071|FLCN	nc|ENSG00000154803|Q8NFG4-3|FLCN	nc|ENSG00000154803|Q8NFG4-3|FLCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2513122558594	2	474.250892	946.48723	0.28594	0.00013561	-0.20335	-9.6439E-05	0.082589	3.9168E-05	474.250978925135	33.343	0.16642	33.343	33.26	33.426	0					11	4	3	0	0	0	0.25109	1	12314	12314		55.504	2.1528	1	219410			24351	5104	15949	16010	24689	24689					0.011846142376725766
LHARQRFAQ	9	Unmodified	_LHARQRFAQ_					0	0	0			REV__ENSG00000142065|ENST00000270001|ZFP14	REV__ENSG00000142065|ENST00000270001|ZFP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.8165893554688	2	563.815056	1125.61556	3.4704	0.0019567	-0.39711	-0.0002239	3.0733	0.0017328	563.8146693362736	27.128	0.2702	27.128	27.019	27.289	0					12	5	3	0	0	0	0.44593	1	9713	9713		38.806	7.1719	1	743130	+		24352	15140	15950	16011	24690	24690					0.05777594271421549
LHAWEISWP	9	Unmodified	_LHAWEISWP_					0	0	0		ENSG00000111671|ENST00000524270|SPSB2;nc|ENSG00000111671|Q99619-2|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.788818359375	2	569.787641	1137.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.429	1	26.429	25.929	26.929	0								0	0	0	0.35507	1	8508	8508		24.203	3.2558	1				24353	2685	15951	16012	24691	24691					-0.0025483731988060754
LHCECISY	8	Carbamidomethyl (C)	_LHCEC(Carbamidomethyl (C))ISY_	LHC(0.362)EC(0.638)ISY		LHC(-2.5)EC(2.5)ISY		0	1	0		ENST00000541310.5_1_12:22631189-22697084:-|nuORF	ENST00000541310.5_1_12:22631189-22697084:-|nuORF	ENST00000541310.5_1_12:22631189-22697084:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.71533203125	2	512.71497	1023.41539	-0.070184	-3.5984E-05	0.33143	0.00016993	0.26125	0.00013394	512.7151853814585	30.554	0.23983	30.554	30.37	30.61	0					12	9	2	0	0	0	0.55361	1	9749	9749		54.765	14.192	2	34502			24354	10543	15952	16013	24692	24692	426				-0.09538384502707231
LHCKADNIRQQ	11	Unmodified	_LHCKADNIRQQ_					0	0	0		ENSG00000146263|ENST00000683635|MMS22L;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000508820.1_1_6:97720576-97730353:-|nuORF;MMS22L|p.K389Sfs*10|1|0.09|ENSG00000146263|chr6:97246644-97246644|T/-|frameshift_variant;ENST00000508976.5_1_6:97702357-97730353:-|nuORF;MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant	ENSG00000146263|ENST00000683635|MMS22L	ENSG00000146263|ENST00000683635|MMS22L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.5627136230469	3	442.562944	1324.667	0.57655	0.00025516	-1.45	-0.00064172	-0.87345	-0.00038656	442.5625380953086	18.174	0.31588	18.174	18.037	18.353	0					15	7	4	0	0	0	0.66391	1	5280	5280		31.068	7.6902	1	574020			24355	4721	15953	16014	24693	24693					0.017655501831313813
LHCYDPVADQ	10	Unmodified	_LHCYDPVADQ_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.757568359375	2	580.755681	1159.49681	3.2439	0.0018839	-1.066	-0.00061906	2.178	0.0012649	580.7552815032425	29.625	1.3977	29.625	29.515	30.913	0					70	28	3	0	0	0	0.46215	1	10860	10860		49.442	5.3247	1	19169000			24356	5992	15954	16015	24694	24694					-0.07655985539122412
LHDLPVTLL	9	Unmodified	_LHDLPVTLL_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.80780029296875	2	510.808042	1019.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.034	1	46.034	45.534	46.534	0								0	0	0	0.28164	1	17065	17065		38.806	0	1		+		24357	14819	15955	16016	24695	24695					0.09251503999769284
LHEAQRTFCD	10	Unmodified	_LHEAQRTFCD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant;DNHD1|p.R2658W|1|0.17|ENSG00000179532|chr11:6557267-6557267|C/T|missense_variant;ENST00000534210.6_1_11:6559916-6579528:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	610.28125	2	610.279854	1218.54516	0.15847	9.6714E-05	1.5313	0.00093451	1.6897	0.0010312	610.2808841375193	19.937	0.11893	19.937	19.851	19.97	0					6	3	2	0	0	0	0.49411	1	5243	5243		45.972	1.8554	1	75068			24358	6771	15956	16017	24696	24696					-0.05537491899235647
LHEELHVF	8	Unmodified	_LHEELHVF_					0	0	0			REV__MED10|p.D6V|1|0.19|ENSG00000133398|chr5:6378467-6378467|T/A|missense_variant	REV__MED10|p.D6V|1|0.19|ENSG00000133398|chr5:6378467-6378467|T/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2637939453125	2	512.266542	1022.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.516	1	39.516	39.016	40.016	0								0	0	0	1.7419	1	15049	15049		52.299	11.727	1		+		24359	20874	15957	16018	24697	24697					0.00817187271752573
LHELLLSSQS	10	Unmodified	_LHELLLSSQS_					0	0	0			REV__nc|ENSG00000119777|Q6NUQ4-2|TMEM214	REV__nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.8108520507812	2	563.808771	1125.60299	3.4707	0.0019568	0.91164	0.00051399	4.3824	0.0024708	563.8092372571512	48.164	0.32252	48.164	48.09	48.413	0					45	16	4	0	0	0	0.43008	1	19144	19144		52.937	1.6012	1	771530	+		24360	14258	15958	16019	24698	24698					0.0452109329785344
LHETSFAP	8	Unmodified	_LHETSFAP_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2240295410156	2	451.224342	900.434132	2.4219E-05	1.0928E-08	-0.46957	-0.00021188	-0.46955	-0.00021187	451.224085280117	28.708	0.33172	28.708	28.559	28.891	0					27	13	3	0	0	0	0.68754	1	8959	8959		35.201	1.6851	1	228000	+		24361	16091	15959	16020	24699	24699					-0.020067635450004673
LHETSFAP	8	Unmodified	_LHETSFAP_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2243347167969	2	451.224342	900.434132	-0.3127	-0.0001411	-0.41589	-0.00018766	-0.72859	-0.00032876	451.2240054001752	28.689	0.19763	28.689	28.592	28.789	0					15	8	2	0	0	0	0.8006	1	8964	8964		20.482	0	1	80213	+		24362	16091	15959	16020	24700	24700					-0.020067635450004673
LHFCKCKTY	9	Carbamidomethyl (C)	_LHFCKC(Carbamidomethyl (C))KTY_	LHFC(0.102)KC(0.898)KTY		LHFC(-9.5)KC(9.5)KTY		0	1	0			REV__nc|ENSG00000268758|Q86SQ3|ADGRE4P	REV__nc|ENSG00000268758|Q86SQ3|ADGRE4P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2901000976562	2	600.288637	1198.56272	2.1031	0.0012625	0.48062	0.00028851	2.5837	0.001551	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.30268	2	15778	15778;18406		50.025	50.025	2	67330000	+		24363	21247	15960	16021	24701;24702	24701	733				-0.028618678979228207
LHGADVVF	8	Unmodified	_LHGADVVF_					0	0	0		nc|ENSG00000148600|Q96JP9-2|CDHR1;ENSG00000148600|ENST00000623527|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2296447753906	2	429.229428	856.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.308	1	39.308	38.808	39.808	0								0	0	0	1.7419	1	12771	12771		33.516	6.7195	1				24364	4842	15961	16022	24703	24703					0.010338441802446141
LHGAVGAG	8	Unmodified	_LHGAVGAG_					0	0	0			REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	341.1875	2	341.187563	680.360573	-0.72745	-0.0002482	0.5611	0.00019144	-0.16635	-5.6756E-05	341.18772372705644	13.846	0.23323	13.846	13.672	13.906	0					19	11	2	0	0	0	0.63381	1	2892	2892		43.626	10.133	1	140720	+		24365	19047	15962	16023	24704	24704					0.007607328032008809
LHGAVGAG	8	Unmodified	_LHGAVGAG_					0	0	0			REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.1873779296875	2	341.187563	680.360573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.902	1	13.902	13.402	14.402	0								0	0	0	1.7419	1	2856	2856		43.626	10.133	1		+		24366	19047	15962	16023	24705	24705					0.007607328032008809
LHGDKGTCK	9	Unmodified	_LHGDKGTCK_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7420959472656	2	479.742376	957.4702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.616	1	15.616	15.116	16.116	0								0	0	0	0.3368	1	4156	4156		27.882	0.83493	1		+		24367	16600	15963	16024	24706	24706					-0.010236296397920341
LHGHLNTL	8	Unmodified	_LHGHLNTL_					0	0	0		nc|ENSG00000182208|Q70IA6|MOB2;ENSG00000182208|ENST00000329957|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7530212402344	2	452.753601	903.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.427	1	29.427	28.927	29.927	0								0	0	0	1.7419	1	9897	9897		50.025	2.3672	1				24368	6885	15964	16025	24707	24707					0.03704337820136061
LHGSSRSW	8	Unmodified	_LHGSSRSW_					0	0	0			REV__ENST00000579040.5_1_17:28030063-28257182:-|nuORF	REV__ENST00000579040.5_1_17:28030063-28257182:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2327575683594	2	465.233033	928.451513	-0.52658	-0.00024498	0.029117	1.3546E-05	-0.49746	-0.00023143	465.23302766748924	19.281	0.69584	19.281	19.193	19.889	0					32	16	4	0	0	0	0.7126	1	5194	5194		31.955	1.4512	1	1257000	+		24369	20432	15965	16026	24708	24708					-0.015574232193330317
LHHDSALL	8	Unmodified	_LHHDSALL_					0	0	0			REV__TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	REV__TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2449645996094	2	453.245609	904.476666	0.72095	0.00032677	-2.1549	-0.0009767	-1.4339	-0.00064993	453.244720175182	40.01	0.18999	40.01	39.956	40.146	0					10	6	2	0	0	0	0.6282	1	15770	15770		44.531	0	1	37882	+		24370	15741	15966	16027	24709	24709					0.020606315832424116
LHHGHDPRGG	10	Unmodified	_LHHGHDPRGG_					0	0	0		PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant;PRRC2A|p.K1685Rfs*9|1|0.21|ENSG00000204469|chr6:31634864-31634864|C/-|frameshift_variant;PRRC2A|p.G1731Wfs*35|1|0.59|ENSG00000204469|chr6:31635155-31635156|-/C|frameshift_variant;PRRC2A|p.G1884Afs*12|1|0.18|ENSG00000204469|chr6:31636228-31636228|C/-|frameshift_variant;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A;PRRC2A|p.R284Vfs*14|1|0.17|ENSG00000204469|chr6:31626023-31626023|T/-|frameshift_variant;PRRC2A|p.R477Afs*94|1|0.28|ENSG00000204469|chr6:31627901-31627901|G/-|frameshift_variant;PRRC2A|p.T807Nfs*10|1|0.5|ENSG00000204469|chr6:31630754-31630755|-/A|frameshift_variant	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2662963867188	2	541.765563	1081.51657	0.30373	0.00016455	1.0252	0.00055541	1.3289	0.00071996	542.2665203079146	34.38	0.36646	34.38	34.246	34.612	0					31	9	4	0	0	0	0.357	1	12803	12803		60.972	6.2073	1	573430			24371	7704	15967	16028	24710	24710					-0.020924286934814518
LHHHQQSL	8	Unmodified	_LHHHQQSL_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2606201171875	2	500.259582	998.504612	2.9212	0.0014614	-0.45075	-0.00022549	2.4705	0.0012359	500.25922135122477	38.465	0.8684	38.465	38.099	38.967	0					42	18	4	0	0	0	0.60719	1	15079	15079		47.916	7.1374	1	537810	+		24372	13436	15968	16029	24711	24711					0.005299545633306479
LHIDGSLM	8	Unmodified	_LHIDGSLM_					0	0	0			REV__ENST00000428284.2_1_7:27168486-27168678:-|nuORF	REV__ENST00000428284.2_1_7:27168486-27168678:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2288513183594	2	443.228571	884.442588	-1.1544	-0.00051167	0.74779	0.00033144	-0.40662	-0.00018023	443.22903223361925	37.686	0.16392	37.686	37.616	37.78	0					14	9	2	0	0	0	0.4723	1	12735	12735		62.978	0	1	63460	+		24373	19131	15969	16030	24712	24712					-0.0042553290001023925
LHKRNHTQ	8	Unmodified	_LHKRNHTQ_					0	0	0		nc|ENSG00000290720|Q5EBM4-2|ZNF542P;nc|ENSG00000290720|Q5EBM4|ZNF542P;ENST00000468396.5_1_19:56884531-56888546:+|nuORF;ENST00000467807.5_1_19:56884531-56888546:+|nuORF	nc|ENSG00000290720|Q5EBM4-2|ZNF542P	nc|ENSG00000290720|Q5EBM4-2|ZNF542P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2861938476562	2	517.286131	1032.55771	0.96701	0.00050022	-1.5728	-0.00081357	-0.60576	-0.00031335	517.2854702083704	14.854	0.11296	14.854	14.797	14.91	0					4	2	2	0	0	0	0.5676	1	3956	3956		53.351	5.4358	1	96090			24374	9804	15970	16031	24713	24713					0.04273332345997005
LHLARLCAM	9	Oxidation (M)	_LHLARLCAM(Oxidation (M))_		LHLARLCAM(1)		LHLARLCAM(50)	0	0	1			REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2799072265625	2	522.278072	1042.54159	3.4007	0.0017761	0.37327	0.00019495	3.774	0.0019711	522.2782433229893	39.681	0.67577	39.681	39.5	40.176	0					40	15	4	0	0	0	0.30268	1	15685	15685		50.025	50.025	1	2635800	+		24375	19943	15971	16032	24714	24714		726			0.02202166793199467
LHLCLWRW	8	Unmodified	_LHLCLWRW_					0	0	0			REV__ENST00000432874.7_2_1:38184128-38186086:-|nuORF	REV__ENST00000432874.7_2_1:38184128-38186086:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.8040771484375	2	563.802571	1125.59059	3.4708	0.0019569	-0.80909	-0.00045617	2.6617	0.0015007	563.8020996208521	28.284	0.61509	28.284	28.177	28.792	0					36	12	5	0	0	0	0.55361	1	10218	10218		54.765	12.29	1	4439200	+		24376	19180	15972	16033	24715	24715					0.032818231444707635
LHLGKYVGSA	10	Unmodified	_LHLGKYVGSA_					0	0	0			REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.79541015625	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.757	1	29.757	29.257	30.257	0								0	0	0	0.41253	1	11053	11053		26.693	2.4902	1		+		24377	14288	15973	16034	24716	24716					0.056334491971938405
LHLKVQDPK	9	Unmodified	_LHLKVQDPK_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.3250732421875	2	539.324391	1076.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.632	1	35.632	35.132	36.132	0								0	0	0	0.33029	1	13377	13377		21.96	0	1		+		24378	14579	15974	16035	24717	24717					0.09897711122584951
LHLLLDRDN	9	Unmodified	_LHLLLDRDN_					0	0	0		PIGM|p.P196L|1|0.29|ENSG00000143315|chr1:160031153-160031153|G/A|missense_variant	PIGM|p.P196L|1|0.29|ENSG00000143315|chr1:160031153-160031153|G/A|missense_variant	PIGM|p.P196L|1|0.29|ENSG00000143315|chr1:160031153-160031153|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.2083740234375	3	370.208495	1107.60366	0.85143	0.00031521	-0.70828	-0.00026221	0.14315	5.2996E-05	370.2081559313367	36.969	0.25653	36.969	36.812	37.068	0					11	5	3	0	0	0	0.53083	1	14427	14427		29.15	1.0681	1	129690			24379	11931	15975	16036	24718	24718					0.0541593273756007
LHNELLLS	8	Unmodified	_LHNELLLS_					0	0	0		GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant;GPR179|p.K1289Rfs*12|1|0.29|ENSG00000277399|chr17:38329703-38329703|T/-|frameshift_variant;GPR179|p.R1290Efs*59|1|0.25|ENSG00000277399|chr17:38329702-38329703|-/T|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179;GPR179|p.A580T|1|0.18|ENSG00000277399|chr17:38334750-38334750|C/T|missense_variant	GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7686767578125	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.986	1	25.986	25.486	26.486	0								0	0	0	1.7419	1	8301	8301		63.306	0	1				24380	8115	15976	16037	24719	24719					0.052020714145328384
LHNGKIKEQ	9	Unmodified	_LHNGKIKEQ_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.204833984375	3	356.204974	1065.59309	-0.057326	-2.042E-05	-0.19176	-6.8307E-05	-0.24909	-8.8727E-05	356.20485794280523	17.047	0.27082	17.047	16.988	17.259	0					8	5	2	0	0	0	0.48389	1	4858	4858		27.047	0	1	334870			24381	944	15977	16038	24720	24720					0.06291950083118536
LHNPTRVK	8	Unmodified	_LHNPTRVK_					0	0	0		ENST00000472823.5_1_6:29576484-29596894:-|nuORF;GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant;nc|ENSG00000204681|Q9UBS5-5|GABBR1;GABBR1|p.P574Qfs*32|1|0.18|ENSG00000204681|chr6:29609367-29609367|G/-|frameshift_variant;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	ENST00000472823.5_1_6:29576484-29596894:-|nuORF	ENST00000472823.5_1_6:29576484-29596894:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.19354248046875	3	322.194409	963.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.878	1	31.878	31.378	32.378	0								0	0	0	1.7419	1	12064	12064		16.473	0	1				24382	7720	15978	16039	24721	24721					0.07816002119841414
LHNSYTDVM	9	Unmodified	_LHNSYTDVM_					0	0	0		ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2452392578125	2	540.244949	1078.47534	1.9723	0.0010655	-1.2475	-0.00067396	0.7248	0.00039157	540.2444245186464	36.807	0.35965	36.807	36.705	37.065	0					18	11	2	0	0	0	0.54267	1	14349	14349		27.882	0	1	595470			24383	5995;10749	15979	16040	24722	24722					-0.06075370567828031
LHPEPEGQDPP	11	Unmodified	_LHPEPEGQDPP_					0	0	0		BOD1L2|p.P156H|1|0.49|ENSG00000228075|chr18:57147779-57147779|C/A|missense_variant	BOD1L2|p.P156H|1|0.49|ENSG00000228075|chr18:57147779-57147779|C/A|missense_variant	BOD1L2|p.P156H|1|0.49|ENSG00000228075|chr18:57147779-57147779|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	608.2879638671875	2	608.28566	1214.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.391	1	46.391	45.891	46.891	0								0	0	0	0.45674	1	18565	18565		22.58	1.6327	1				24384	311	15980	16041	24723	24723					-0.04192971604243212
LHPGESVIQVS	11	Unmodified	_LHPGESVIQVS_					0	0	0		ENSG00000174992|ENST00000400752|ZG16	ENSG00000174992|ENST00000400752|ZG16	ENSG00000174992|ENST00000400752|ZG16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.316162109375	2	583.31422	1164.61389	3.2252	0.0018813	0.92016	0.00053674	4.1454	0.0024181	583.3146836365282	45.167	0.20701	45.167	45.078	45.285	0					15	9	2	0	0	0	0.52595	1	18079	18079		42.338	0	1	119570			24385	6526	15981	16042	24724	24724					0.03816495672117526
LHPHVLMGL	9	Unmodified	_LHPHVLMGL_					0	0	0		ENST00000405709.6_1_7:110303289-110303394:-|nuORF	ENST00000405709.6_1_7:110303289-110303394:-|nuORF	ENST00000405709.6_1_7:110303289-110303394:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.792236328125	2	508.78913	1015.56371	2.9867	0.0015196	2.838	0.0014439	5.8247	0.0029635	508.79086038523775	50.13	0.19396	50.13	50.018	50.212	0					12	9	2	0	0	0	0.52436	1	19795	19795		29.842	0	1	39879			24386	9279	15982	16043	24725	24725					0.056547145333183835
LHPLSEKAR	9	Unmodified	_LHPLSEKAR_					0	0	0			REV__nc|ENSG00000290684|A6NFC9|OR2W5P	REV__nc|ENSG00000290684|A6NFC9|OR2W5P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.8048706054688	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.037	1	13.037	12.537	13.537	0								0	0	0	0.38404	1	2533	2533		15.642	1.5047	1		+		24387	21257	15983	16044	24726	24726					0.07536253945750104
LHPPSSSFRV	10	Unmodified	_LHPPSSSFRV_					0	0	0			REV__ENST00000402367.5_1_19:54711128-54711440:+|nuORF	REV__ENST00000402367.5_1_19:54711128-54711440:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.8043823242188	2	563.803823	1125.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.073	1	28.073	27.573	28.573	0								0	0	0	0.4201	1	8726	8726		21.96	1.013	1		+		24388	18954	15984	16045	24727	24727					0.035319500831292316
LHPQPMPSAGL	11	Unmodified	_LHPQPMPSAGL_					0	0	0			REV__LPCAT4|p.H491Tfs*75|1|0.14|ENSG00000176454|chr15:34359232-34359233|-/G|frameshift_variant	REV__LPCAT4|p.H491Tfs*75|1|0.14|ENSG00000176454|chr15:34359232-34359233|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.3014526367188	2	574.300059	1146.58556	1.6489	0.00094698	0.79939	0.00045909	2.4483	0.0014061	574.3004781246349	15.124	0.43844	15.124	15.023	15.462	0					24	10	3	0	0	0	0.1937	1	3848	3848		75.043	4.2271	1	2755600	+		24389	20842	15985	16046	24728	24728					0.018134744912231326
LHPQPMPSAGL	11	Unmodified	_LHPQPMPSAGL_					0	0	0			REV__LPCAT4|p.H491Tfs*75|1|0.14|ENSG00000176454|chr15:34359232-34359233|-/G|frameshift_variant	REV__LPCAT4|p.H491Tfs*75|1|0.14|ENSG00000176454|chr15:34359232-34359233|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.3016967773438	2	574.300059	1146.58556	1.9462	0.0011177	0.54861	0.00031507	2.4948	0.0014328	574.3004558185978	15.138	0.40645	15.138	15.028	15.434	0					20	8	4	0	0	0	0.40479	1	4089	4089		51.193	51.193	1	1812800	+		24390	20842	15985	16046	24729	24729					0.018134744912231326
LHQFGSESI	9	Unmodified	_LHQFGSESI_					0	0	0			REV__LRRC70|p.N499Tfs*17|1|0.2|ENSG00000186105|chr5:62580928-62580928|A/-|frameshift_variant	REV__LRRC70|p.N499Tfs*17|1|0.2|ENSG00000186105|chr5:62580928-62580928|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2532958984375	2	509.253631	1016.49271	-0.40564	-0.00020657	0.12635	6.4345E-05	-0.27929	-0.00014223	509.2536027927774	31.069	0.36694	31.069	30.965	31.332	0					23	8	4	0	0	0	0.055856	1	11666	11666		93.195	10.445	1	2946000	+		24391	17067	15986	16047	24730	24730					-0.014877069704994028
LHQPSAAAHL	10	Unmodified	_LHQPSAAAHL_					0	0	0		ENST00000599643.5_1_19:41211049-41220034:-|nuORF	ENST00000599643.5_1_19:41211049-41220034:-|nuORF	ENST00000599643.5_1_19:41211049-41220034:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7830810546875	2	522.78289	1043.55123	1.5131	0.00079104	-0.73351	-0.00038347	0.77962	0.00040757	522.7826064025945	27.27	0.18407	27.27	27.219	27.403	0					6	4	2	0	0	0	0.63224	1	8910	8910		30.318	2.4355	1	119940			24392	11028	15987	16048	24731	24731					0.031193943946163927
LHQTRSGA	8	Unmodified	_LHQTRSGA_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.23486328125	2	435.233033	868.451513	0.35495	0.00015449	3.7886	0.0016489	4.1435	0.0018034	435.23461781594773	24.734	0.26623	24.734	24.528	24.794	0					11	5	3	0	0	0	0.73426	1	8681	8681		29.15	0	1	331820	+		24393	14100	15988	16049	24732	24732					0.012025767806676413
LHRAARNLG	9	Unmodified	_LHRAARNLG_					0	0	0			REV__nc|ENSG00000096996|P42701-2|IL12RB1	REV__nc|ENSG00000096996|P42701-2|IL12RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.53411865234375	3	336.533425	1006.57845	0.51637	0.00017377	1.5213	0.00051196	2.0376	0.00068573	336.5344128448669	18.861	4.3428	18.861	18.75	23.093	0					349	101	5	0	0	0	0.5654	1	7187	7187		32.812	0	1	882170000	+		24394	13483	15989	16050	24733	24733					0.07541922725658878
LHRAGTEWQL	10	Unmodified	_LHRAGTEWQL_					0	0	0		ENST00000429515.1_1_2:139036197-139036410:+|nuORF	ENST00000429515.1_1_2:139036197-139036410:+|nuORF	ENST00000429515.1_1_2:139036197-139036410:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.21563720703125	3	404.215761	1209.62546	-0.5812	-0.00023493	0.26494	0.00010709	-0.31625	-0.00012783	404.2158643485153	25.857	0.64804	25.857	25.718	26.366	0					28	11	4	0	0	0	0.58189	1	9076	9076		36.447	2.2742	1	830730			24395	9474	15990	16051	24734	24734					0.029027374861243516
LHRDSKRFQ	9	Unmodified	_LHRDSKRFQ_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	396.21893310546875	3	396.219506	1185.63669	-1.2814	-0.0005077	0.24038	9.5242E-05	-1.041	-0.00041246	396.21947757668414	23.086	0.097349	23.086	23.029	23.126	0					5	3	2	0	0	0	0.46194	1	6897	6897		36.447	2.2742	1	68078			24396	3046	15991	16052	24735	24735					0.05129559580268506
LHREPIQTV	9	Unmodified	_LHREPIQTV_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.8121948242188	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.407	1	18.407	17.907	18.907	0								0	0	0	0.36919	1	4802	4802		19.104	11.413	1				24397	815	15992	16053	24736	24736					0.066602366001689
LHRFSKLA	8	Unmodified	_LHRFSKLA_					0	0	0		ENST00000296487.8_2_3:52283629-52283827:+|nuORF	ENST00000296487.8_2_3:52283629-52283827:+|nuORF	ENST00000296487.8_2_3:52283629-52283827:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2915954589844	2	486.292894	970.571235	-2.9134	-0.0014168	1.0488	0.00051001	-1.8646	-0.00090674	486.2934459517083	40.733	0.33547	40.733	40.604	40.94	0					29	13	3	0	0	0	0.60719	1	14425	14425		47.916	1.9636	1	277980			24398	8458	15993	16054	24737	24737					0.08477190125233847
LHRLHTAPL	9	Unmodified	_LHRLHTAPL_					0	0	0			REV__nc|ENSG00000132781|Q9UIF7-4|MUTYH	REV__nc|ENSG00000132781|Q9UIF7-4|MUTYH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.3168334960938	2	529.3169	1056.61925	-1.174	-0.00062141	-0.20818	-0.00011019	-1.3822	-0.00073161	529.3171741330044	27.798	0.13412	27.798	27.73	27.864	0					5	3	2	0	0	0	0.55379	1	9143	9143		26.693	3.6504	1	107030	+		24399	21021	15994	16055	24738	24738					0.09320264045254589
LHRLPSRTF	9	Unmodified	_LHRLPSRTF_					0	0	0		ENST00000318560.5_1_9:133761241-133761367:+|nuORF	ENST00000318560.5_1_9:133761241-133761367:+|nuORF	ENST00000318560.5_1_9:133761241-133761367:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.2215881347656	3	376.220847	1125.64071	0.27474	0.00010336	1.7957	0.0006756	2.0705	0.00077896	376.2214293064404	29.731	0.25114	29.731	29.644	29.895	0					13	6	4	0	0	0	0.51991	1	10656	10656		30.318	2.4355	1	374230			24400	8595	15995	16056	24739	24739					0.08291649073998997
LHRLRPLP	8	Unmodified	_LHRLRPLP_					0	0	0			REV__ENST00000527348.1_1_11:65770323-65770707:+|nuORF	REV__ENST00000527348.1_1_11:65770323-65770707:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.54974365234375	3	334.550416	1000.62942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.391	1	16.391	15.891	16.891	0								0	0	0	1.7419	1	3920	3920		25.45	7.1258	1		+		24401	20008	15996	16057	24740	24740					0.12912871770504353
LHRRLAEL	8	Unmodified	_LHRRLAEL_					0	0	0			REV__PKN3|p.Q113H|1|0.4|ENSG00000160447|chr9:128705807-128705807|G/C|missense_variant	REV__PKN3|p.Q113H|1|0.4|ENSG00000160447|chr9:128705807-128705807|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.31036376953125	2	504.309075	1006.6036	2.9319	0.0014786	-0.31056	-0.00015662	2.6213	0.001322	504.3089205792018	45.229	0.49641	45.229	45.1	45.597	0					71	20	5	0	0	0	0.7126	1	18229	18229		31.955	1.4512	1	5635000	+		24402	21380	15997	16058	24741	24741					0.10055977528224957
LHSELVCAY	9	Unmodified	_LHSELVCAY_					0	0	0			REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF	REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7522583007812	2	517.75241	1033.49027	3.3319	0.0017251	-4.3363	-0.0022451	-1.0044	-0.00052004	517.7500544315025	37.714	0.3014	37.714	37.535	37.837	0					13	6	3	0	0	0	0.27781	1	14768	14768		52.299	15.14	1	129890	+		24403	15350	15998	16059	24742	24742					-0.025138786998240903
LHSGNEQF	8	Unmodified	_LHSGNEQF_					0	0	0		nc|ENSG00000131355|Q9BY15-3|ADGRE3;ENST00000599900.5_1_19:14769312-14779653:-|nuORF;ADGRE3|p.F254Lfs*12|1|0.18|ENSG00000131355|chr19:14647301-14647301|A/-|frameshift_variant;ENSG00000131355|ENST00000253673|ADGRE3	nc|ENSG00000131355|Q9BY15-3|ADGRE3	nc|ENSG00000131355|Q9BY15-3|ADGRE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2167053222656	2	466.217049	930.419545	0.66408	0.00030961	-0.86239	-0.00040206	-0.19831	-9.2457E-05	466.2166461518426	30.938	0.32671	30.938	30.815	31.141	0					17	7	3	0	0	0	0.46905	1	11610	11610		63.306	9.9548	1	607090			24404	75	15999	16060	24743	24743					-0.048448356931316994
LHSKEPRK	8	Unmodified	_LHSKEPRK_					0	0	0			REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.1978759765625	3	332.197931	993.571963	0.52256	0.00017359	-0.49468	-0.00016433	0.027882	9.2624E-06	332.19774368545757	14.417	0.24721	14.417	14.289	14.536	0					24	6	5	0	0	0	0.41952	1	3477	3477		68.787	0	1	1032500	+		24405	14482	16000	16061	24744	24744					0.0749198477428763
LHSKESFAK	9	Unmodified	_LHSKESFAK_					0	0	0			REV__ENSG00000221994|ENST00000276054|ZNF630	REV__ENSG00000221994|ENST00000276054|ZNF630	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7853393554688	2	523.785099	1045.55564	1.0224	0.00053552	-0.33568	-0.00017582	0.68673	0.0003597	523.784845713814	23.827	0.41847	23.827	23.711	24.13	0					25	8	5	0	0	0	0.016683	1	8268	8268		127.46	42.546	1	5127100	+		24406	17614	16001	16062	24745	24745					0.03468858817518594
LHSKESFAK	9	Unmodified	_LHSKESFAK_					0	0	0			REV__ENSG00000221994|ENST00000276054|ZNF630	REV__ENSG00000221994|ENST00000276054|ZNF630	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7854614257812	2	523.785099	1045.55564	1.5686	0.00082159	-0.66296	-0.00034725	0.9056	0.00047434	523.7846464915767	23.692	0.30291	23.692	23.574	23.877	0					17	7	4	0	0	0	0.034359	1	7263	7263		104.75	38.317	1	826070	+		24407	17614	16001	16062	24746	24746					0.03468858817518594
LHSKESFAK	9	Unmodified	_LHSKESFAK_					0	0	0			REV__ENSG00000221994|ENST00000276054|ZNF630	REV__ENSG00000221994|ENST00000276054|ZNF630	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7852783203125	2	523.785099	1045.55564	0.49741	0.00026054	0.15336	8.0327E-05	0.65077	0.00034087	523.7851641910653	23.837	0.41308	23.837	23.683	24.096	0					28	8	5	0	0	0	0.048471	1	8125	8125		95.815	19.041	1	9016200	+		24408	17614	16001	16062	24747	24747					0.03468858817518594
LHSLYQARI	9	Unmodified	_LHSLYQARI_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.545166015625	3	367.545219	1099.61383	-0.70268	-0.00025827	0.96568	0.00035493	0.263	9.6665E-05	367.5453628922318	21.03	0.24349	21.03	20.881	21.124	0					12	7	2	0	0	0	0.57706	1	5976	5976		18.262	0	1	195590			24409	7249	16002	16063	24748	24748					0.06800540462813842
LHSMPSPQNL	10	Unmodified	_LHSMPSPQNL_					0	0	0		ENST00000424774.1_1_1:16481746-16481983:+|nuORF	ENST00000424774.1_1_1:16481746-16481983:+|nuORF	ENST00000424774.1_1_1:16481746-16481983:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.2832641601562	2	562.281866	1122.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.709	1	37.709	37.209	38.209	0								0	0	0	0.4201	1	13492	13492		19.104	0	1				24410	9424	16003	16064	24749	24749					-0.007194024055024784
LHSPNVGALH	10	Unmodified	_LHSPNVGALH_					0	0	0			REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7838134765625	2	522.78289	1043.55123	1.5253	0.00079742	-0.38917	-0.00020345	1.1362	0.00059397	522.7828300807704	27.213	0.18191	27.213	27.125	27.307	0					11	7	2	0	0	0	0.37692	1	8358	8358		58.782	8.7574	1	152880	+		24411	19603	16004	16065	24750	24750					0.031193943946163927
LHSPNVGALH	10	Unmodified	_LHSPNVGALH_					0	0	0			REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7830200195312	2	522.78289	1043.55123	0.4491	0.00023478	0.0088006	4.6008E-06	0.4579	0.00023938	522.7829104548082	27.407	0.67613	27.407	27.002	27.678	0					17	7	4	0	0	0	0.24256	1	9821	9821		74.255	7.8258	1	1578900	+		24412	19603	16004	16065	24751	24751					0.031193943946163927
LHSVPGSLVV	10	Unmodified	_LHSVPGSLVV_					0	0	0			REV__nc|ENSG00000102145|P15976-3|GATA1	REV__nc|ENSG00000102145|P15976-3|GATA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5345458984375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.305	1	53.305	52.805	53.805	0								0	0	0	0.4201	1	19511	19511		16.007	0	1		+		24413	13626	16005	16066	24752	24752					0.07810333339955378
LHSYAAHLQG	10	Unmodified	_LHSYAAHLQG_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7832641601562	2	548.780348	1095.54614	1.8992	0.0010422	2.0593	0.0011301	3.9584	0.0021723	549.2826472564195	21.788	0.15157	21.788	21.685	21.837	0					7	3	3	0	0	0	0.61187	1	6365	6365		32.812	3.6629	1	323180	+		24414	17855	16006	16067	24753	24753					0.002190905319821468
LHSYCNELP	9	Unmodified	_LHSYCNELP_					0	0	0			REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2425537109375	2	538.247492	1074.48043	1.0109	0.00054411	-4.0778	-0.0021949	-3.0669	-0.0016508	538.2441604954913	31.691	0.44711	31.691	31.342	31.789	0					19	11	3	0	0	0	0.50858	1	10911	10911		31.53	1.0262	1	75950	+		24415	15869	16007	16068	24754	24754					-0.05383066705235251
LHTIESDRF	9	Unmodified	_LHTIESDRF_					0	0	0			REV__ENST00000491861.5_1_6:31940339-31948823:+|nuORF	REV__ENST00000491861.5_1_6:31940339-31948823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.2859497070312	2	559.285463	1116.55637	1.2867	0.00071966	-0.41064	-0.00022967	0.8761	0.00048999	559.2852963034203	19.428	0.13099	19.428	19.361	19.492	0					9	4	3	0	0	0	0.11898	1	5020	5020		58.782	5.4305	1	518080	+		24416	17475	16008	16069	24755	24755					0.002756534665650179
LHTIESDRF	9	Unmodified	_LHTIESDRF_					0	0	0			REV__ENST00000491861.5_1_6:31940339-31948823:+|nuORF	REV__ENST00000491861.5_1_6:31940339-31948823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.2862548828125	2	559.285463	1116.55637	-0.45801	-0.00025616	1.6597	0.00092827	1.2017	0.00067211	559.286289405076	19.441	0.0818	19.441	19.402	19.484	0					6	2	3	0	0	0	0.11898	1	5272	5272		58.782	21.623	1	297900	+		24417	17475	16008	16069	24756	24756					0.002756534665650179
LHTVLGIAT	9	Unmodified	_LHTVLGIAT_					0	0	0		nc|ENSG00000184321|Q9H342|OR51J1	nc|ENSG00000184321|Q9H342|OR51J1	nc|ENSG00000184321|Q9H342|OR51J1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7789001464844	2	462.779285	923.544017	-0.71496	-0.00033087	0.3138	0.00014522	-0.40117	-0.00018565	462.77936770142605	42.185	0.10902	42.185	42.137	42.246	0					7	5	2	0	0	0	0.5654	1	16011	16011		25.45	0	1	43322			24418	11679	16009	16070	24757	24757					0.0791866179419003
LHTWLTVLK	9	Unmodified	_LHTWLTVLK_					0	0	0		ENST00000440896.2_1_11:59856214-59861079:+|nuORF;ENSG00000149534|ENST00000278888|MS4A2	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.8363647460938	2	555.837134	1109.65972	1.4189	0.00078869	-2.9116	-0.0016184	-1.4927	-0.00082967	555.8354012072831	21.238	0.15417	21.238	21.135	21.289	0					6	4	2	0	0	0	0.5741	1	5832	5832		17.365	0	1	50358			24419	4892	16010	16071	24758	24758					0.10927185645027748
LHVAGQLVLQ	10	Unmodified	_LHVAGQLVLQ_					0	0	0			REV__ENST00000379977.7_3_10:6008214-6019471:-|nuORF	REV__ENST00000379977.7_3_10:6008214-6019471:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3258056640625	2	539.324391	1076.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.608	1	35.608	35.108	36.108	0								0	0	0	0.41137	1	13812	13812		29.15	13.508	1		+		24420	18765	16011	16072	24759	24759					0.09897711122584951
LHVVAAHLEL	10	Unmodified	_LHVVAAHLEL_					0	0	0		ENST00000557314.5_1_14:20839728-20850189:-|nuORF;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant	ENST00000557314.5_1_14:20839728-20850189:-|nuORF;nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.3225708007812	2	551.324391	1100.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.839	1	18.839	18.339	19.339	0								0	0	0	0.38475	1	5583	5583		30.504	0	1				24421	3603;10672	16012	16073	24760	24760					0.08793711122598324
LHYINPGIKE	10	Unmodified	_LHYINPGIKE_					0	0	0		ENST00000534336.1_1_11:65270469-65270529:+|nuORF	ENST00000534336.1_1_11:65270469-65270529:+|nuORF	ENST00000534336.1_1_11:65270469-65270529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.2203369140625	3	395.220513	1182.63971	-0.82454	-0.00032587	0.69624	0.00027517	-0.1283	-5.0706E-05	395.2207846427253	19.406	0.21835	19.406	19.265	19.484	0					14	6	3	0	0	0	0.61238	1	5227	5227		32.751	2.1817	1	179060			24422	10471	16013	16074	24761	24761					0.055693899144444
LHYNLMLT	8	Oxidation (M)	_LHYNLM(Oxidation (M))LT_		LHYNLM(1)LT		LHYNLM(50)LT	0	0	1		TRHDE|p.F209Sfs*9|1|0.45|ENSG00000072657|chr12:72273399-72273399|T/-|frameshift_variant;ENSG00000072657|ENST00000261180|TRHDE	TRHDE|p.F209Sfs*9|1|0.45|ENSG00000072657|chr12:72273399-72273399|T/-|frameshift_variant	TRHDE|p.F209Sfs*9|1|0.45|ENSG00000072657|chr12:72273399-72273399|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.76129150390625	2	510.762778	1019.511	-1.7859	-0.00091218	-0.075429	-3.8526E-05	-1.8613	-0.0009507	510.76263031363123	37.756	0.30299	37.756	37.644	37.947	0					23	14	2	0	0	0	0.59411	1	13530	13530		50.025	7.5501	1	127250			24423	1496	16014	16075	24762	24762		69			0.002027116798103634
LHYRLGSSG	9	Unmodified	_LHYRLGSSG_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2608337402344	2	495.261791	988.509028	0.53232	0.00026364	-2.0092	-0.00099507	-1.4769	-0.00073143	495.26080119087266	31.554	0.26028	31.554	31.463	31.723	0					13	6	3	0	0	0	0.61124	1	11488	11488		17.365	0.89182	1	515860	+		24424	17338	16015	16076	24763	24763					0.014314189862375315
LHYSQGAGGGA	11	Unmodified	_LHYSQGAGGGA_					0	0	0			REV__ENST00000445273.6_1_13:31729697-31736149:-|nuORF	REV__ENST00000445273.6_1_13:31729697-31736149:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.24102783203125	2	509.241055	1016.46756	0.21254	0.00010823	-0.23097	-0.00011762	-0.018433	-9.3867E-06	509.24095592389295	28.918	1.1557	28.918	28.628	29.784	0					33	24	2	0	0	0	0.67178	1	10697	10697		30.318	1.1682	1	49252	+		24425	19273	16016	16077	24764	24764					-0.04001761773076851
LIAHKRTHTG	10	Unmodified	_LIAHKRTHTG_					0	0	0		ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant;ZNF317|p.L487Pfs*6|1|0.3|ENSG00000130803|chr19:9161101-9161104|TATT/-|frameshift_variant;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENSG00000130803|ENST00000247956|ZNF317;nc|ENSG00000130803|Q96PQ6-3|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317	ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant	ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.3298950195312	2	567.330539	1132.64652	0.17392	9.8668E-05	-0.54496	-0.00030918	-0.37105	-0.00021051	567.3301040425858	52.259	0.88865	52.259	51.905	52.794	0					103	54	3	0	0	0	0.6796	1	18509	18509		24.519	7.0512	1	172910			24426	3673	16017	16078	24765	24765					0.08550747585650242
LIALGTGGIK	10	Unmodified	_LIALGTGGIK_					0	0	0		nc|ENSG00000163406|Q16348-2|SLC15A2;SLC15A2|p.N718Tfs*2|1|0.11|ENSG00000163406|chr3:121940965-121940965|G/-|frameshift_variant;ENSG00000163406|ENST00000489711|SLC15A2;ENSG00000088386|ENST00000376503|SLC15A1;ENST00000376494.1_1_13:99373362-99378793:-|nuORF	nc|ENSG00000163406|Q16348-2|SLC15A2;ENST00000376494.1_1_13:99373362-99378793:-|nuORF	nc|ENSG00000163406|Q16348-2|SLC15A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.80255126953125	2	471.80276	941.590967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.954	1	27.954	27.454	28.454	0								0	0	0	0.3639	1	9213	9213		40.778	0.20554	1				24427	5553;9040	16018	16079	24766	24766					0.11783521345341796
LIALVDRSP	9	Unmodified	_LIALVDRSP_					0	0	0		CON__P09870	CON__P09870	CON__P09870	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2984313964844	2	492.297842	982.581131	-0.073667	-3.6266E-05	0.85633	0.00042157	0.78266	0.0003853	492.2985457137766	37.502	0.33916	37.502	37.263	37.602	0					30	18	2	0	0	0	0.59802	1	12245	12245		21.96	1.013	1	137680		+	24428	637	16019	16080	24767	24767					0.08914333339942004
LIAVLGAKIL	10	Unmodified	_LIAVLGAKIL_					0	0	0			REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	337.5708923339844	3	337.570594	1009.68995	-0.68294	-0.00023054	0.64289	0.00021702	-0.040048	-1.3519E-05	337.5707714957281	35.888	0.41296	35.888	35.64	36.053	0					37	20	3	0	0	0	0.72365	1	12090	12090		18.262	2.6203	1	224330	+		24429	21872	16020	16081	24768	24768					0.18549544310224064
LICDVALGK	9	Carbamidomethyl (C)	_LIC(Carbamidomethyl (C))DVALGK_	LIC(1)DVALGK		LIC(60)DVALGK		0	1	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7780456542969	2	494.778428	987.542302	-0.043447	-2.1497E-05	0.019513	9.6549E-06	-0.023934	-1.1842E-05	494.77834106206666	33.942	0.15085	33.942	33.877	34.028	0					5	3	2	0	0	0	0.21263	1	13039	13039		60.118	10.677	1	77269			24430	2182	16021	16082	24769	24769	87				0.048032847139324986
LICSKMNPLW	10	Unmodified	_LICSKMNPLW_					0	0	0		CON__ENSEMBL:ENSBTAP00000011227;CON__ENSEMBL:ENSBTAP00000033053	CON__ENSEMBL:ENSBTAP00000011227	CON__ENSEMBL:ENSBTAP00000011227	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.21185302734375	3	402.212084	1203.61442	-0.59739	-0.00024028	1.7661	0.00071035	1.1687	0.00047007	402.21241851940624	37.96	0.44229	37.96	37.657	38.099	0					10	9	2	0	0	0	0.63224	1	14941	14941		30.318	3.2704	1	51259		+	24431	618	16022	16083	24770	24770					0.02075875795981119
LIDKMIKCL	9	Unmodified	_LIDKMIKCL_					0	0	0			REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF	REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.8139038085938	2	538.813956	1075.61336	1.395	0.00075167	-0.30619	-0.00016498	1.0889	0.00058669	538.8139607441001	29.257	0.18476	29.257	29.211	29.396	0					8	4	3	0	0	0	0.61124	1	10825	10825		21.96	6.3181	1	67130	+		24432	13298	16023	16084	24771	24771					0.0785766142707871
LIDLYITTL	9	Unmodified	_LIDLYITTL_					0	0	0			REV__ENST00000303052.12_2_15:64592761-64592794:-|nuORF	REV__ENST00000303052.12_2_15:64592761-64592794:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.5451965332031	3	355.546114	1063.61651	-0.056019	-1.9917E-05	-2.3805	-0.00084637	-2.4365	-0.00086629	355.5452627468081	17.15	0.2709	17.15	17.039	17.31	0					9	5	3	0	0	0	0.5879	1	4905	4905		17.468	0	1	570720	+		24433	18218	16024	16085	24772	24772					0.08724951077078913
LIECIKEL	8	Carbamidomethyl (C)	_LIEC(Carbamidomethyl (C))IKEL_	LIEC(1)IKEL		LIEC(74)IKEL		0	1	0			REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2878723144531	2	509.286085	1016.55762	3.0083	0.0015321	0.64379	0.00032788	3.6521	0.00186	509.286453900817	12.685	0.089197	12.685	12.599	12.688	0					6	2	3	0	0	0	0.37378	1	2750	2750		73.975	73.975	1	663290	+		24434	12421	16025	16086	24773	24773	486				0.05000151511126205
LIELLDDNSL	10	Unmodified	_LIELLDDNSL_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.8112182617188	2	572.808436	1143.60232	1.5109	0.00086545	1.665	0.00095374	3.1759	0.0018192	572.8094970925961	36.65	0.3496	36.65	36.542	36.892	0					21	9	3	0	0	0	0.14893	1	13815	13815		65.465	0	1	259550	+		24435	12726	16026	16087	24774	24774					0.03626253858124073
LIELLDDNSL	10	Unmodified	_LIELLDDNSL_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.809326171875	2	572.808436	1143.60232	0.16919	9.6913E-05	1.3948	0.00079893	1.564	0.00089584	572.8092632288814	36.588	0.41819	36.588	36.428	36.846	0					13	8	3	0	0	0	0.27406	1	14221	14221		49.536	0	1	479260	+		24436	12726	16026	16087	24775	24775					0.03626253858124073
LIELLQDE	8	Unmodified	_LIELLQDE_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.767822265625	2	486.76604	971.517527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.074	1	11.074	10.574	11.574	0								0	0	0	1.7419	1	2185	2185		12.959	0	1		+		24437	16412	16027	16088	24776	24776					0.03062928112183272
LIENSLAR	8	Unmodified	_LIENSLAR_					0	0	0			REV__ENSG00000169884|ENST00000301061|WNT10B	REV__ENSG00000169884|ENST00000301061|WNT10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.266845703125	2	458.266542	914.51853	-0.15616	-7.1565E-05	0.47049	0.00021561	0.31432	0.00014404	458.2668125727664	32.2	0.11731	32.2	32.142	32.259	0					6	2	3	0	0	0	0.30437	1	12227	12227		82.305	4.9875	1	100760	+		24438	16340	16028	16089	24777	24777					0.05785187271760606
LIEQALARAQ	10	Unmodified	_LIEQALARAQ_					0	0	0			REV__ECHDC2|p.R223Q|1|0.16|ENSG00000121310|chr1:52904680-52904680|C/T|missense_variant	REV__ECHDC2|p.R223Q|1|0.16|ENSG00000121310|chr1:52904680-52904680|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.8253173828125	2	556.824755	1111.63496	-0.15409	-8.5803E-05	1.173	0.00065314	1.0189	0.00056734	556.8252830323225	12.667	0.34529	12.667	12.455	12.801	0					14	8	3	0	0	0	0.20981	1	2894	2894		78.264	7.4476	1	287510	+		24439	12762	16029	16090	24778	24778					0.08360505771634053
LIEQALARAQ	10	Unmodified	_LIEQALARAQ_					0	0	0			REV__ECHDC2|p.R223Q|1|0.16|ENSG00000121310|chr1:52904680-52904680|C/T|missense_variant	REV__ECHDC2|p.R223Q|1|0.16|ENSG00000121310|chr1:52904680-52904680|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.8247680664062	2	556.824755	1111.63496	3.5122	0.0019557	-2.4239	-0.0013497	1.0882	0.00060596	556.8232101289096	12.675	0.30165	12.675	12.472	12.773	0					14	7	3	0	0	0	0.073977	1	2767	2767		101.25	9.9874	1	211520	+		24440	12762	16029	16090	24779	24779					0.08360505771634053
LIETAQKSF	9	Unmodified	_LIETAQKSF_					0	0	0			REV__PBX3|p.N241S|1|0.11|ENSG00000167081|chr9:125935486-125935486|A/G|missense_variant	REV__PBX3|p.N241S|1|0.11|ENSG00000167081|chr9:125935486-125935486|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7880859375	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.109	1	34.109	33.609	34.609	0								0	0	0	0.16876	1	11490	11490		55.504	6.0627	1		+		24441	16164	16030	16091	24780	24780					0.04370323240414109
LIFANKVY	8	Unmodified	_LIFANKVY_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.28387451171875	2	484.284203	966.553853	0.86407	0.00041845	-1.0241	-0.00049596	-0.16004	-7.7504E-05	484.2837113979264	39.605	0.18724	39.605	39.513	39.701	0					8	4	2	0	0	0	0.65276	1	15661	15661		40.573	1.5511	1	127290	+		24442	17458	16031	16092	24781	24781					0.06923849799557047
LIFFIIAPS	9	Unmodified	_LIFFIIAPS_					0	0	0			REV__ENSG00000196517|ENST00000372310|SLC6A9	REV__ENSG00000196517|ENST00000372310|SLC6A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.808349609375	2	510.810054	1019.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.661	1	44.661	44.161	45.161	0								0	0	0	0.20652	1	16713	16713		50.025	0.58299	1		+		24443	17262	16032	16093	24782	24782					0.09653593493476365
LIFLYIYT	8	Unmodified	_LIFLYIYT_					0	0	0			REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.304443359375	2	523.302062	1044.58957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.591	1	50.591	50.091	51.091	0								0	0	0	1.7419	1	18199	18199		23.037	3.9332	1		+		24444	20069	16033	16094	24783	24783					0.06905887256561982
LIFTESKRK	9	Unmodified	_LIFTESKRK_					0	0	0		ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.3378295898438	2	561.337498	1120.66044	0.47929	0.00026904	0.31787	0.00017843	0.79715	0.00044747	561.3376059274408	20.967	0.25452	20.967	20.88	21.135	0					11	6	3	0	0	0	0.021961	1	6595	6595		118.74	56.636	1	695170			24445	9625	16034	16095	24784	24784					0.10493980294063476
LIGGQAWDW	9	Unmodified	_LIGGQAWDW_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2576293945312	2	523.258717	1044.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.84	1	34.84	34.34	35.34	0								0	0	0	0.20652	1	12365	12365		50.025	12.865	1				24446	7559	16035	16096	24785	24785					-0.017590992453051513
LIGITGHGIP	10	Unmodified	_LIGITGHGIP_					0	0	0		ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2927551269531	2	489.292559	976.570566	0.60771	0.00029735	-0.92266	-0.00045145	-0.31495	-0.0001541	489.29215474943715	25.5	0.51555	25.5	25.239	25.755	0					32	10	4	0	0	0	0.47621	1	9089	9089		47.916	9.1095	1	2397800			24447	5370	16036	16097	24786	24786					0.0813435068552053
LIGNQGII	8	Unmodified	_LIGNQGII_					0	0	0			REV__ENST00000604870.6_1_9:70993123-71019929:+|nuORF	REV__ENST00000604870.6_1_9:70993123-71019929:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2528991699219	2	414.252903	826.491253	-0.067796	-2.8085E-05	-0.30031	-0.0001244	-0.3681	-0.00015249	414.2527176968165	30.086	0.76772	30.086	29.899	30.667	0					40	19	3	0	0	0	0.74117	1	10162	10162		28.254	0	1	561970	+		24448	15567	16037	16098	24787	24787					0.07106703731381003
LIGSTHILTPQ	11	Unmodified	_LIGSTHILTPQ_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.3400268554688	2	590.340238	1178.66592	0.11317	6.6808E-05	0.039752	2.3467E-05	0.15292	9.0275E-05	590.3403479037942	20.995	0.39006	20.995	20.833	21.223	0					19	12	2	0	0	0	0.76233	1	5930	5930		21.686	0	1	167600			24449	4117	16038	16099	24788	24788					0.08373659085918916
LIGVQSLLEPD	11	Unmodified	_LIGVQSLLEPD_					0	0	0			REV__ENST00000530283.1_1_11:111385578-111385695:-|nuORF	REV__ENST00000530283.1_1_11:111385578-111385695:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.3308715820312	2	592.332079	1182.6496	0.12694	7.5189E-05	-1.9439	-0.0011514	-1.8169	-0.0010762	592.3309258802101	16.535	0.078156	16.535	16.498	16.576	0					6	2	3	0	0	0	0.4771	1	3785	3785		36.447	11.928	1	509720	+		24450	20046	16039	16100	24789	24789					0.06558533129145871
LIHKFFFPF	9	Unmodified	_LIHKFFFPF_					0	0	0			REV__AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	REV__AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	598.3391723632812	2	598.33677	1194.65899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.891	1	31.891	31.391	32.391	0								0	0	0	0.29774	1	10603	10603		20.482	3.1169	1		+		24451	12189	16040	16101	24790	24790					0.06944390995977301
LIHYTVSLLKK	11	Unmodified	_LIHYTVSLLKK_					0	0	0		tr|U7SRG0|U7SRG0_FUSNUMobA-likeNTPtransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01649PE=4SV=1	tr|U7SRG0|U7SRG0_FUSNUMobA-likeNTPtransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01649PE=4SV=1	tr|U7SRG0|U7SRG0_FUSNUMobA-likeNTPtransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01649PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	657.9095458984375	2	657.91083	1313.80711	-2.4528	-0.0016137	0.89768	0.00059059	-1.5552	-0.0010232	657.9114755811343	15.936	0.082456	15.936	15.887	15.97	0					5	3	2	0	0	0	0.2472	1	3677	3677		60.118	0	1	87003			24452	22721	16041	16102	24791	24791					0.16275657459163995
LIIAFFACF	9	Unmodified	_LIIAFFACF_					0	0	0		tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7832641601562	2	522.782982	1043.55141	1.6252	0.00084962	-1.2406	-0.00064856	0.3846	0.00020106	522.7823931374769	27.399	0.47398	27.399	27.289	27.763	0					22	9	4	0	0	0	0.31222	1	9813	9813		49.211	3.2385	1	1837400			24453	22685	16042	16103	24792	24792					0.03137678070243055
LIIPPEPRQ	9	Unmodified	_LIIPPEPRQ_					0	0	0		ENST00000396009.7_1_20:50140121-50140241:-|nuORF	ENST00000396009.7_1_20:50140121-50140241:-|nuORF	ENST00000396009.7_1_20:50140121-50140241:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.88177490234375	3	354.88172	1061.62333	0.49009	0.00017393	-0.55451	-0.00019679	-0.064415	-2.286E-05	354.8815197724601	18.424	1.332	18.424	17.883	19.215	0					49	32	2	0	0	0	0.50461	1	5401	5401		24.519	2.8334	1	707340			24454	9200	16043	16104	24793	24793					0.09498308748334239
LIKEIINAP	9	Unmodified	_LIKEIINAP_					0	0	0			REV__tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	REV__tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.8164978027344	2	505.815867	1009.61718	-0.075869	-3.8376E-05	0.86388	0.00043696	0.78801	0.00039859	505.8164112062595	35.399	0.25756	35.399	35.297	35.555	0					20	13	2	0	0	0	0.45358	1	11596	11596		37.159	5.2042	1	44425	+		24455	21666	16044	16105	24794	24794					0.11275790516799589
LIKKAGTEL	9	Unmodified	_LIKKAGTEL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.8078918457031	2	486.808042	971.601532	0.004497	2.1892E-06	-0.12116	-5.8982E-05	-0.11666	-5.6793E-05	486.8079779579036	21.271	0.15488	21.271	21.162	21.317	0					8	4	3	0	0	0	0.0792	1	5820	5820		84.916	2.6105	1	277660			24456	5289	16045	16106	24795	24795					0.11459503999742537
LIKKAGTEL	9	Unmodified	_LIKKAGTEL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.807861328125	2	486.808042	971.601532	-0.31778	-0.0001547	-0.11649	-5.671E-05	-0.43427	-0.00021141	486.8079788438868	21.605	0.23352	21.605	21.504	21.738	0					13	5	4	0	0	0	0.025517	1	6879	6879		113.41	6.9964	1	2113500			24457	5289	16045	16106	24796	24796					0.11459503999742537
LIKVAAKTK	9	Unmodified	_LIKVAAKTK_					0	0	0			REV__nc|ENSG00000164946|Q5H8C1-3|FREM1	REV__nc|ENSG00000164946|Q5H8C1-3|FREM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.5585632324219	3	324.558577	970.653902	0.53409	0.00017334	-0.83827	-0.00027207	-0.30418	-9.8725E-05	324.55836006961124	16.311	0.1371	16.311	16.225	16.362	0					7	3	3	0	0	0	0.43426	1	4383	4383		37.812	7.4938	1	729200	+		24458	16013	16046	16107	24797	24797					0.16740087133371162
LILEKSNSM	9	Unmodified	_LILEKSNSM_					0	0	0			REV__ADRA1B|p.T252I|1|0.17|ENSG00000170214|chr5:159917660-159917660|C/T|missense_variant	REV__ADRA1B|p.T252I|1|0.17|ENSG00000170214|chr5:159917660-159917660|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.52471923828125	3	345.523204	1033.54778	3.0283	0.0010464	1.1329	0.00039145	4.1612	0.0014378	345.5236339638622	22.464	0.71853	22.464	22.304	23.022	0					24	14	2	0	0	0	0.57706	1	7487	7487		18.262	0	1	2123700	+		24459	12096	16047	16108	24798	24798					0.03234963505747146
LILKPPAP	8	Unmodified	_LILKPPAP_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.7835388183594	2	424.783839	847.553125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.306	1	34.306	33.806	34.806	0								0	0	0	1.7419	1	13213	13213		28.254	6.5519	1		+		24460	17338	16048	16109	24799	24799					0.12325055150506614
LILKTQAVF	9	Unmodified	_LILKTQAVF_					0	0	0			REV__CASR|p.N118Tfs*6|1|0.17|ENSG00000036828|chr3:122257245-122257245|A/-|frameshift_variant	REV__CASR|p.N118Tfs*6|1|0.17|ENSG00000036828|chr3:122257245-122257245|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.8853454589844	3	344.886582	1031.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.594	1	13.594	13.094	14.094	0								0	0	0	0.38735	1	3344	3344		10.265	0	1		+		24461	12334	16049	16110	24800	24800					0.12336380896454102
LILMITAHGT	10	Unmodified	_LILMITAHGT_					0	0	0		ENST00000551407.5_1_12:77191259-77191304:+|nuORF	ENST00000551407.5_1_12:77191259-77191304:+|nuORF	ENST00000551407.5_1_12:77191259-77191304:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.3087158203125	2	535.307352	1068.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.111	1	34.111	33.611	34.611	0								0	0	0	0.35368	1	11491	11491		42.396	5.9494	1				24462	10626	16050	16111	24801	24801					0.06859546639338987
LILMMHHARKF	11	Unmodified	_LILMMHHARKF_					0	0	0		ENST00000401617.6_1_2:29320804-29354210:+|nuORF;ENST00000438819.1_2_2:29353616-29354210:+|nuORF;ENST00000471165.1_1_2:29353708-29354210:+|nuORF;ENST00000401605.5_1_2:29344333-29354210:+|nuORF	ENST00000401617.6_1_2:29320804-29354210:+|nuORF	ENST00000401617.6_1_2:29320804-29354210:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	698.8905029296875	2	698.888852	1395.76315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.205	1	34.205	33.705	34.705	0								0	0	0	0.45674	1	11523	11523		5.9211	3.3968	1				24463	9254	16051	16112	24802	24802					0.0811002648952126
LILNITQDFGK	11	Unmodified	_LILNITQDFGK_					0	0	0			REV__ENSG00000128534|ENST00000249299|LSM8	REV__ENSG00000128534|ENST00000249299|LSM8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2431640625	3	421.243206	1260.70779	-0.19902	-8.3834E-05	-0.16697	-7.0337E-05	-0.36599	-0.00015417	421.24312518433516	16.287	0.68161	16.287	16.12	16.801	0					61	26	3	0	0	0	0.7098	1	3637	3637		17.833	0	1	654970	+		24464	14515	16052	16113	24803	24803					0.0878621477438628
LILTAKPAPS	10	Unmodified	_LILTAKPAPS_					0	0	0			REV__TCF19|p.T213Pfs*45|1|0.38|ENSG00000137310|chr6:31161841-31161841|G/-|frameshift_variant	REV__TCF19|p.T213Pfs*45|1|0.38|ENSG00000137310|chr6:31161841-31161841|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.81573486328125	2	505.815867	1009.61718	1.2465	0.00063052	-1.1957	-0.00060481	0.050821	2.5706E-05	505.8152054761933	35.578	0.51589	35.578	35.415	35.931	0					25	10	4	0	0	0	0.23612	1	13756	13756		75.043	16.261	1	1121900	+		24465	14918	16053	16114	24804	24804					0.11275790516799589
LILTPTREL	9	Unmodified	_LILTPTREL_					0	0	0		nc|ENSG00000118197|Q5T1V6-2|DDX59;ENSG00000118197|ENST00000331314|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.3269653320312	2	528.326599	1054.63865	0.10778	5.6944E-05	0.37438	0.00019779	0.48216	0.00025474	528.3266649185639	37.595	0.22181	37.595	37.483	37.705	0					11	6	2	0	0	0	0.28897	1	14252	14252		51.193	0	1	164870			24466	11497	16054	16115	24805	24805					0.11351175545519254
LIMAPPLLC	9	Unmodified	_LIMAPPLLC_					0	0	0			REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7755126953125	2	485.776842	969.539131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.885	1	18.885	18.385	19.385	0								0	0	0	0.28056	1	5018	5018		39.021	24.357	1		+		24467	19925	16055	16116	24806	24806					0.0531431833555871
LIMLIFLGH	9	Unmodified	_LIMLIFLGH_					0	0	0		nc|ENSG00000162706|Q8N126-3|CADM3;ENSG00000162706|ENST00000368125|CADM3;nc|ENSG00000162706|Q8N126-2|CADM3	nc|ENSG00000162706|Q8N126-3|CADM3	nc|ENSG00000162706|Q8N126-3|CADM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.8805236816406	3	352.880663	1055.62016	-0.050357	-1.777E-05	-0.40608	-0.0001433	-0.45644	-0.00016107	352.8805845681607	17.25	0.26285	17.25	17.09	17.353	0					9	5	3	0	0	0	0.60043	1	4953	4953		21.96	4.5949	1	341650			24468	5492	16056	16117	24807	24807					0.09457342369955768
LIMSAIYGG	9	Unmodified	_LIMSAIYGG_					0	0	0			REV__nc|ENSG00000175497|Q8N608-4|DPP10	REV__nc|ENSG00000175497|Q8N608-4|DPP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.748779296875	2	462.746596	923.478639	4.1639	0.0019268	0.39491	0.00018274	4.5588	0.0021096	462.746865286582	13.409	0.084431	13.409	13.349	13.433	0					9	5	2	0	0	0	0.41354	1	2763	2763		40.573	7.057	1	49586	+		24469	16615	16057	16118	24808	24808					0.01383924276842663
LINAPDQNKE	10	Unmodified	_LINAPDQNKE_					0	0	0			REV__MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant	REV__MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.297119140625	2	571.296027	1140.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.943	1	20.943	20.443	21.443	0								0	0	0	0.41253	1	5932	5932		26.693	2.4902	1		+		24470	14285	16058	16119	24809	24809					0.012836187754373896
LINELGNLA	9	Unmodified	_LINELGNLA_					0	0	0			REV__ENSG00000114030|ENST00000344337|KPNA1	REV__ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7737121582031	2	478.7742	955.533846	0.019921	9.5378E-06	-0.71211	-0.00034094	-0.69219	-0.0003314	478.7737561797933	21.32	0.086557	21.32	21.276	21.362	0					4	2	2	0	0	0	0.2873	1	5868	5868		51.335	3.6781	1	68138	+		24471	14063	16059	16120	24810	24810					0.0543005406894963
LINVWIPS	8	Unmodified	_LINVWIPS_					0	0	0		nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2732849121094	2	471.276378	940.538203	-1.3519	-0.0006371	-2.2694	-0.0010695	-3.6212	-0.0017066	471.2752692009408	31.169	0.31955	31.169	31.01	31.33	0					17	12	2	0	0	0	0.7126	1	10268	10268		31.955	0.37597	1	73365			24472	1229	16060	16121	24811	24811					0.06555563282518051
LIPAGPLNNE	10	Unmodified	_LIPAGPLNNE_					0	0	0			REV__PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant	REV__PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2863159179688	2	519.284931	1036.55531	0.57938	0.00030086	-0.052743	-2.7389E-05	0.52664	0.00027347	519.2851615873669	32.644	0.23228	32.644	32.55	32.782	0					16	9	3	0	0	0	0.65895	1	10546	10546		21.96	0	1	101530	+		24473	17679	16061	16122	24812	24812					0.03849439097643881
LIPLVNLMD	9	Unmodified	_LIPLVNLMD_					0	0	0		QRSL1|p.S226L|3|0.25|ENSG00000130348|chr6:106652328-106652328|C/T|missense_variant	QRSL1|p.S226L|3|0.25|ENSG00000130348|chr6:106652328-106652328|C/T|missense_variant	QRSL1|p.S226L|3|0.25|ENSG00000130348|chr6:106652328-106652328|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.29541015625	2	514.296453	1026.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.804	1	42.804	42.304	43.304	0								0	0	0	0.26578	1	17105	17105		51.335	5.3835	1				24474	11993	16062	16123	24813	24813					0.06612741890762663
LIQKTIKK	8	Unmodified	_LIQKTIKK_					0	0	0		ENST00000441109.6_1_7:80276056-80285961:+|nuORF;ENST00000480599.6_1_7:80276056-80276293:+|nuORF;nc|ENSG00000135218|P16671-2|CD36;nc|ENSG00000135218|P16671-4|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	ENST00000441109.6_1_7:80276056-80285961:+|nuORF	ENST00000441109.6_1_7:80276056-80285961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.5584716796875	3	324.558577	970.653902	-0.70263	-0.00022804	0.62605	0.00020319	-0.076583	-2.4856E-05	324.55871877061816	16.005	0.10022	16.005	15.945	16.045	0					5	3	2	0	0	0	0.7914	1	3761	3761		24.203	0	1	263010			24475	3972	16063	16124	24814	24814					0.1674008713338253
LIQNNIEL	8	Unmodified	_LIQNNIEL_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-5|PATJ	REV__nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.77423095703125	2	478.7742	955.533846	-0.65967	-0.00031583	0.12196	5.8391E-05	-0.53771	-0.00025744	478.77425080621447	21.848	0.46541	21.848	21.488	21.953	0					17	9	2	0	0	0	0.51384	1	7046	7046		58.782	5.8453	1	939190	+		24476	21022	16064	16125	24815	24815					0.054300540689382615
LIQTLQDELVK	11	Unmodified	_LIQTLQDELVK_					0	0	0			REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.9227294921875	3	433.922132	1298.74457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.752	1	20.752	20.252	21.252	0								0	0	0	0.38772	1	6490	6490		39.873	1.1591	1		+		24477	16488	16065	16126	24816	24816					0.1071446660030233
LIQTPFLVL	9	Unmodified	_LIQTPFLVL_					0	0	0			REV__ENST00000557925.1_1_19:8321089-8326990:+|nuORF	REV__ENST00000557925.1_1_19:8321089-8326990:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.3271484375	2	522.328611	1042.64267	-1.3077	-0.00068306	-1.3714	-0.00071634	-2.6792	-0.0013994	522.3278937627034	27.531	0.17293	27.531	27.443	27.616	0					7	4	2	0	0	0	0.07136	1	9026	9026		60.972	0	1	210490	+		24478	13429	16066	16127	24817	24817					0.1230526503920828
LIRDGEQL	8	Unmodified	_LIRDGEQL_					0	0	0			REV__PDZD3|p.A264Pfs*6|2|0.31|ENSG00000172367|chr11:119187626-119187626|C/-|frameshift_variant	REV__PDZD3|p.A264Pfs*6|2|0.31|ENSG00000172367|chr11:119187626-119187626|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2647399902344	2	472.263999	942.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.527	1	26.527	26.027	27.027	0								0	0	0	1.7419	1	8554	8554		28.254	2.8041	1		+		24479	16459	16067	16128	24818	24818					0.03988883409135724
LIRFLLNLYEQ	11	Unmodified	_LIRFLLNLYEQ_					0	0	0			REV__VPS13C|p.D1359Y|1|0.16|ENSG00000129003|chr15:61958698-61958698|C/A|missense_variant	REV__VPS13C|p.D1359Y|1|0.16|ENSG00000129003|chr15:61958698-61958698|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	711.4071655273438	2	711.411195	1420.80784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.035	1	36.035	35.535	36.535	0								0	0	0	0.40876	1	13560	13560		35.152	2.3396	1		+		24480	22276	16068	16129	24819	24819					0.11426452108253216
LIRYISSK	8	Unmodified	_LIRYISSK_					0	0	0			REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.201171875	3	327.202682	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.521	1	55.521	55.021	56.021	0								0	0	0	1.7419	1	19967	19967		11.511	1.2458	1		+		24481	13788	16069	16130	24820	24820					0.0960663720256889
LISGSLTIQ	9	Unmodified	_LISGSLTIQ_					0	0	0			REV__TFEC|p.R88I|1|0.2|ENSG00000105967|chr7:115974174-115974174|C/A|missense_variant	REV__TFEC|p.R88I|1|0.2|ENSG00000105967|chr7:115974174-115974174|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.27606201171875	2	466.276575	930.538597	-0.43793	-0.0002042	0.1251	5.833E-05	-0.31283	-0.00014587	466.2765997371434	32.018	0.1764	32.018	31.946	32.122	0					12	7	2	0	0	0	0.48389	1	10316	10316		34.173	1.3601	1	114620	+		24482	21635	16070	16131	24821	24821					0.07054938211717854
LISIGTVLSV	10	Unmodified	_LISIGTVLSV_					0	0	0		nc|ENSG00000151812|A4IF30-2|SLC35F4;ENSG00000151812|ENST00000556826|SLC35F4;nc|ENSG00000151812|A4IF30|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.31573486328125	2	501.3157	1000.61685	3.4875	0.0017483	-2.1141	-0.0010598	1.3734	0.00068852	501.31459577486436	35.782	0.15707	35.782	35.718	35.875	0					12	7	2	0	0	0	0.52707	1	12105	12105		42.396	1.618	1	88994			24483	4988	16071	16132	24822	24822					0.11656370796936244
LISKLDEGL	9	Unmodified	_LISKLDEGL_					0	0	0			REV__ENSG00000090432|ENST00000264198|MUL1	REV__ENSG00000090432|ENST00000264198|MUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7906188964844	2	494.289682	986.564812	-0.25695	-0.00012701	-0.58465	-0.00028899	-0.84161	-0.000416	494.2892574750403	46.288	0.15274	46.288	46.211	46.363	0					14	9	2	0	0	0	0.25716	1	14289	14289		54.776	1.4249	1	103800	+		24484	13427	16072	16133	24823	24823					0.07099207383191697
LISLISSVLG	10	Unmodified	_LISLISSVLG_					0	0	0			REV__nc|ENSG00000131779|O96011-2|PEX11B	REV__nc|ENSG00000131779|O96011-2|PEX11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.3163146972656	2	501.3157	1000.61685	0.43238	0.00021676	0.5769	0.00028921	1.0093	0.00050597	501.3159174418664	35.706	0.11314	35.706	35.675	35.788	0					10	5	2	0	0	0	0.57532	1	11704	11704		37.159	0.13063	1	137520	+		24485	14634	16073	16134	24824	24824					0.11656370796958981
LISNQYNKI	9	Unmodified	_LISNQYNKI_					0	0	0			REV__tr|U7T2L5|U7T2L5_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00616PE=4SV=1	REV__tr|U7T2L5|U7T2L5_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00616PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3087158203125	2	546.806031	1091.59751	1.8521	0.0010128	0.078133	4.2723E-05	1.9303	0.0010555	546.806262834481	25.175	0.86089	25.175	24.645	25.506	0					49	17	5	0	0	0	0.26904	1	8805	8805		53.351	5.6941	1	5030300	+		24486	22107	16074	16135	24825	24825					0.05537414506034111
LISPEPWA	8	Unmodified	_LISPEPWA_					0	0	0		nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.744384765625	2	456.744911	911.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.727	1	32.727	32.227	33.227	0								0	0	0	1.7419	1	10597	10597		28.254	1.4582	1				24487	11432	16075	16136	24826	24826					0.01598997494465948
LISTTIIIQ	9	Unmodified	_LISTTIIIQ_					0	0	0			REV__ENST00000547963.1_1_12:114182810-114183011:-|nuORF	REV__ENST00000547963.1_1_12:114182810-114183011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.31573486328125	2	501.3157	1000.61685	-0.58856	-0.00029506	0.47148	0.00023636	-0.11708	-5.8693E-05	501.31590061131675	35.94	0.2656	35.94	35.833	36.098	0					13	5	3	0	0	0	0.21263	1	13908	13908		60.118	1.8883	1	893550	+		24488	20180	16076	16137	24827	24827					0.11656370796947613
LISVTTIIGL	10	Unmodified	_LISVTTIIGL_					0	0	0			REV__ENST00000436747.5_1_2:242681986-242688401:+|nuORF	REV__ENST00000436747.5_1_2:242681986-242688401:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3306884765625	2	515.33135	1028.64815	0.059617	3.0722E-05	-2.4256	-0.00125	-2.366	-0.0012193	515.3302775718012	17.686	0.14919	17.686	17.614	17.763	0					8	4	3	0	0	0	0.60281	1	4470	4470		15.642	8.9063	1	797350	+		24489	16826	16077	16138	24828	24828					0.13496943831046337
LISYDTGRA	9	Unmodified	_LISYDTGRA_					0	0	0			REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant	REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2608337402344	2	498.261456	994.50836	-0.022752	-1.1336E-05	1.026	0.00051119	1.0032	0.00049986	498.2617755572665	32.149	0.30444	32.149	32.001	32.306	0					13	6	3	0	0	0	0.062676	1	12181	12181		90.777	3.0224	1	643250	+		24490	13339	16078	16139	24829	24829					0.010885795465242154
LISYGEFGN	9	Unmodified	_LISYGEFGN_					0	0	0		ENST00000486103.6_1_17:58031378-58035783:-|nuORF;ENSG00000189050|ENST00000305783|RNFT1	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2434997558594	2	500.242732	998.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.91	1	51.91	51.41	52.41	0								0	0	0	0.38404	1	19220	19220		15.642	0	1				24491	7294	16079	16140	24830	24830					-0.028385117190850906
LITLRYLD	8	Unmodified	_LITLRYLD_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.3011779785156	2	503.800217	1005.58588	0.12394	6.244E-05	-0.41286	-0.000208	-0.28892	-0.00014556	504.300838888723	27.094	0.16332	27.094	27.014	27.177	0					7	4	2	0	0	0	0.72381	1	8814	8814		30.504	1.3541	1	86972	+		24492	21069	16080	16141	24831	24831					0.08331217482702868
LITSLKGGGN	10	Unmodified	_LITSLKGGGN_					0	0	0			REV__nc|ENSG00000155275|Q8IYL2-2|TRMT44	REV__nc|ENSG00000155275|Q8IYL2-2|TRMT44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2792663574219	2	480.279649	958.544745	-0.18179	-8.7308E-05	-0.50216	-0.00024118	-0.68395	-0.00032849	480.27938623657235	30.127	0.64722	30.127	29.839	30.487	0					55	16	4	0	0	0	0.50881	1	10780	10780		44.377	1.981	1	3955400	+		24493	21072	16081	16142	24832	24832					0.063814564432505
LITTKQMCN	9	Carbamidomethyl (C),Oxidation (M)	_LITTKQM(Oxidation (M))C(Carbamidomethyl (C))N_	LITTKQMC(1)N	LITTKQM(1)CN	LITTKQMC(41)N	LITTKQM(41)CN	0	1	1			REV__ENST00000326132.10_1_22:31601541-31601643:+|nuORF	REV__ENST00000326132.10_1_22:31601541-31601643:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.27734375	2	562.775559	1123.53657	0.9314	0.00052417	-2.5156	-0.0014157	-1.5842	-0.00089157	563.275806246771	38.371	0.086674	38.371	38.32	38.407	0					7	4	2	0	0	0	0.41113	1	13728	13728		40.778	9.2484	1	40009	+		24494	18354	16082	16143	24833	24833	648	686			-0.02026181860037468
LIVLTLKWG	9	Unmodified	_LIVLTLKWG_					0	0	0			REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant	REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.2254333496094	3	348.226827	1041.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.096	1	14.096	13.596	14.596	0								0	0	0	0.40712	1	3360	3360		5.9211	0	1		+		24495	12032	16083	16144	24834	24834					0.13948971276136035
LIVVGVGK	8	Unmodified	_LIVVGVGK_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.7694396972656	2	392.768189	783.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.082	1	20.082	19.582	20.582	0								0	0	0	1.7419	1	6453	6453		14.664	0.88877	1				24496	4616	16084	16145	24835	24835					0.12140482116421936
LIVYYGSF	8	Unmodified	_LIVYYGSF_					0	0	0		ENSG00000221947|ENST00000408926|XKR9	ENSG00000221947|ENST00000408926|XKR9	ENSG00000221947|ENST00000408926|XKR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2580261230469	2	481.255111	960.49567	-0.10657	-5.1288E-05	0.21021	0.00010116	0.10364	4.9876E-05	481.2556523152894	31.306	0.85644	31.306	30.782	31.638	0					37	19	4	0	0	0	0.74117	1	11578	11578		28.254	1.4582	1	267640			24497	7851	16085	16146	24836	24836					0.013841681542885453
LIWVTMKQ	8	Unmodified	_LIWVTMKQ_					0	0	0			REV__GABRG2|p.A158Lfs*13|1|0.15|ENSG00000113327|chr5:162097776-162097776|A/-|frameshift_variant	REV__GABRG2|p.A158Lfs*13|1|0.15|ENSG00000113327|chr5:162097776-162097776|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.79229736328125	2	509.791338	1017.56812	0.95882	0.0004888	-1.3044	-0.00066495	-0.34553	-0.00017615	510.29150265944867	33.678	0.5502	33.678	33.497	34.048	0					35	14	5	0	0	0	0.44433	1	12460	12460		65.803	1.5959	1	1112900	+		24498	14037	16086	16147	24837	24837					0.06004178956209216
LIYGLNKF	8	Unmodified	_LIYGLNKF_					0	0	0			REV__tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	REV__tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2837219238281	2	484.284203	966.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.644	1	39.644	39.144	40.144	0								0	0	0	1.7419	1	15599	15599		52.299	4.3836	1		+		24499	22091	16087	16148	24838	24838					0.06923849799568416
LIYGTPRAA	9	Unmodified	_LIYGTPRAA_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2761535644531	2	481.276909	960.539266	0.68563	0.00032998	-2.9158	-0.0014033	-2.2302	-0.0010733	481.2756143266452	28.37	0.44851	28.37	28.084	28.532	0					32	9	6	0	0	0	0.22377	1	10402	10402		58.782	10.866	1	683820			24500	2557	16088	16149	24839	24839					0.05741777651405755
LIYVAGGLTK	10	Unmodified	_LIYVAGGLTK_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.8156127929688	2	517.815867	1033.61718	0.048017	2.4864E-05	-0.39572	-0.00020491	-0.34771	-0.00018005	517.8159022245853	36.455	0.47488	36.455	36.199	36.674	0					23	13	2	0	0	0	0.52275	1	13678	13678		42.864	13.715	1	777970			24501	2866	16089	16150	24840	24840					0.10171790516778856
LIYVAGGLTK	10	Unmodified	_LIYVAGGLTK_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.8154907226562	2	517.815867	1033.61718	0.064984	3.365E-05	-0.17981	-9.3108E-05	-0.11483	-5.9458E-05	517.8155758313611	36.086	0.12029	36.086	35.987	36.108	0					8	5	2	0	0	0	0.59277	1	12209	12209		35.152	19.516	1	88661			24502	2866	16089	16150	24841	24841					0.10171790516778856
LIYVAGGLTK	10	Unmodified	_LIYVAGGLTK_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.8154907226562	2	517.815867	1033.61718	1.5481	0.00080164	-1.611	-0.0008342	-0.062879	-3.256E-05	517.8149787469671	36.265	0.22602	36.265	36.202	36.428	0					14	6	3	0	0	0	0.44601	1	14114	14114		51.193	10.415	1	318160			24503	2866	16089	16150	24842	24842					0.10171790516778856
LKAEKASQKVT	11	Unmodified	_LKAEKASQKVT_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.8587036132812	2	601.858795	1201.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.715	1	18.715	18.215	19.215	0								0	0	0	0.4462	1	5792	5792		23.523	13.817	1				24504	1630	16090	16151	24843	24843					0.11025330631650831
LKALAASK	8	Unmodified	_LKALAASK_					0	0	0		nc|ENSG00000013619|Q13495-3|MAMLD1;nc|ENSG00000013619|Q13495-4|MAMLD1;ENSG00000013619|ENST00000370401|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.262939453125	2	401.263271	800.511988	-1.3326	-0.00053474	1.4589	0.0005854	0.12624	5.0656E-05	401.2635120582662	16.162	0.099827	16.162	16.096	16.196	0					5	3	2	0	0	0	0.59773	1	3831	3831		49.442	13.823	1	41675			24505	11419	16091	16152	24844	24844					0.10375294111042876
LKALSVTPV	9	Unmodified	_LKALSVTPV_					0	0	0			REV__COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant	REV__COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2973327636719	2	464.29731	926.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.195	1	39.195	38.695	39.695	0								0	0	0	0.38123	1	12743	12743		16.473	0	1		+		24506	12559	16092	16153	24845	24845					0.11384118971045609
LKARFKPEF	9	Unmodified	_LKARFKPEF_					0	0	0		tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.3353271484375	2	568.334759	1134.65496	0.14341	8.1507E-05	-0.17975	-0.00010216	-0.036334	-2.065E-05	568.3348492962041	38.389	0.12372	38.389	38.305	38.429	0					6	4	2	0	0	0	0.38666	1	14592	14592		35.618	10.168	1	48449			24507	22999	16093	16154	24846	24846					0.09302301502270893
LKATYIQN	8	Unmodified	_LKATYIQN_					0	0	0		CTBS|p.R347H|1|0.29|ENSG00000117151|chr1:84555117-84555117|C/T|missense_variant;ENSG00000117151|ENST00000370630|CTBS	CTBS|p.R347H|1|0.29|ENSG00000117151|chr1:84555117-84555117|C/T|missense_variant	CTBS|p.R347H|1|0.29|ENSG00000117151|chr1:84555117-84555117|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7685241699219	2	475.768917	949.523281	0.62378	0.00029677	-2.2025	-0.0010479	-1.5787	-0.00075108	475.7679405132894	38.39	0.14592	38.39	38.305	38.45	0					9	5	2	0	0	0	0.67394	1	15046	15046		37.159	1.5408	1	133700			24508	704	16094	16155	24847	24847					0.046500714145167876
LKAVDLSGY	9	Unmodified	_LKAVDLSGY_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7696533203125	2	483.26875	964.522947	-0.16939	-8.1861E-05	-1.3507	-0.00065273	-1.52	-0.00073459	483.26788958726075	51.947	0.10655	51.947	51.888	51.994	0					7	5	2	0	0	0	0.5741	1	18497	18497		11.511	7.8267	1	110600	+		24509	15268	16095	16156	24848	24848					0.03926651694678185
LKCGAEKLK	9	Unmodified	_LKCGAEKLK_					0	0	0			REV__ENSG00000124701|ENST00000244669|APOBEC2	REV__ENSG00000124701|ENST00000244669|APOBEC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	330.5306091308594	3	330.531922	988.573937	-1.9066	-0.00063019	-2.0535	-0.00067873	-3.96	-0.0013089	330.53130526270957	18.642	0.23777	18.642	18.607	18.845	0					11	6	3	0	0	0	0.24095	1	4909	4909		46.457	2.0796	1	2000800	+		24510	14413	16096	16157	24849	24849					0.0791927746786314
LKDGDTIGVKN	11	Unmodified	_LKDGDTIGVKN_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.2160949707031	3	387.215427	1158.62445	0.44265	0.0001714	0.72848	0.00028208	1.1711	0.00045348	387.2157742298858	18.467	0.26646	18.467	18.377	18.644	0					7	5	2	0	0	0	0.67983	1	5697	5697		29.551	4.4248	1	158350			24511	1740	16097	16158	24850	24850					0.05148478326600525
LKDLKKKQ	8	Unmodified	_LKDLKKKQ_					0	0	0			REV__ENSG00000055208|ENST00000637181|TAB2	REV__ENSG00000055208|ENST00000637181|TAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.83038330078125	2	500.829309	999.644065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.06	1	17.06	16.56	17.56	0								0	0	0	1.7419	1	4176	4176		21.96	0	1		+		24512	13053	16098	16159	24851	24851					0.1442289912798742
LKDPQWKK	8	Unmodified	_LKDPQWKK_					0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1;REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000115504|ENST00000431489|EHBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.8062744140625	2	521.805834	1041.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.168	1	28.168	27.668	28.668	0								0	0	0	1.7419	1	9924	9924		18.324	0	1		+		24513	14113;16509	16099	16160	24852	24852					0.0779803957684635
LKDRKRPE	8	Unmodified	_LKDRKRPE_					0	0	0			REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.283203125	2	521.311815	1040.60908	1.0401	0.00054224	-0.78821	-0.0004109	0.25193	0.00013134	521.3113712386327	12.14	0.088313	12.14	12.087	12.175	0					7	5	2	0	0	0	0.76187	1	2330	2330		30.504	8.5438	1	60071	+		24514	13702	16100	16161	24853	24853					0.09039656320032918
LKDTREVDE	9	Unmodified	_LKDTREVDE_					0	0	0			REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7802124023438	2	552.78021	1103.54587	1.593	0.00088056	-0.82136	-0.00045403	0.7716	0.00042653	552.77974119683	33.101	0.30608	33.101	33.003	33.309	0					12	7	2	0	0	0	0.28897	1	12657	12657		51.193	3.2332	1	423820	+		24515	22132	16101	16162	24854	24854					-0.0017637397852467984
LKEAELKMGS	10	Unmodified	_LKEAELKMGS_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant;USP40|p.N976Hfs*17|1|0.07|ENSG00000085982|chr2:233491251-233491252|-/TGATATGG|frameshift_variant	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2991943359375	2	553.299724	1104.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.417	1	23.417	22.917	23.917	0								0	0	0	0.41967	1	8066	8066		24.519	0.31644	1				24516	1740	16102	16163	24855	24855					0.0367863505148307
LKEAQLAE	8	Unmodified	_LKEAQLAE_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2532653808594	2	451.2531	900.491647	-2.608	-0.0011768	2.4635	0.0011117	-0.14443	-6.5176E-05	451.2544402472541	28.966	0.14505	28.966	28.867	29.012	0					5	3	2	0	0	0	0.67394	1	9694	9694		37.159	0	1	66847	+		24517	21153	16103	16164	24856	24856					0.03742078660570769
LKEDILELI	9	Unmodified	_LKEDILELI_					0	0	0		CUL5|p.F72L|1|0.09|ENSG00000166266|chr11:108046349-108046349|T/C|missense_variant	CUL5|p.F72L|1|0.09|ENSG00000166266|chr11:108046349-108046349|T/C|missense_variant	CUL5|p.F72L|1|0.09|ENSG00000166266|chr11:108046349-108046349|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.32568359375	2	543.326265	1084.63798	1.1416	0.00062024	-3.4808	-0.0018912	-2.3393	-0.001271	543.324465030565	30.299	0.19206	30.299	30.192	30.384	0					7	4	2	0	0	0	0.54267	1	11313	11313		27.882	7.8855	1	52809			24518	717	16104	16165	24857	24857					0.09904336105796574
LKEEHVAY	8	Unmodified	_LKEEHVAY_					0	0	0		sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1;sp|F5HEN8|HELI_HCMVMDNAreplicationhelicaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.75830078125	2	494.758549	987.502546	-0.065542	-3.2427E-05	1.2043	0.00059582	1.1387	0.0005634	494.75883110093747	33.334	0.34782	33.334	33.084	33.431	0					24	14	3	0	0	0	0.49887	1	10808	10808		60.294	6.9425	1	317210			24519	22449	16105	16166	24858	24858					0.008294810348502324
LKEEHVAY	8	Unmodified	_LKEEHVAY_					0	0	0		sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1;sp|F5HEN8|HELI_HCMVMDNAreplicationhelicaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.758056640625	2	494.758549	987.502546	-0.42527	-0.0002104	1.6695	0.00082598	1.2442	0.00061558	494.7586052835775	33.535	0.40909	33.535	33.288	33.698	0					35	10	5	0	0	0	0.49887	1	12398	12398		60.294	0	1	1404500			24520	22449	16105	16166	24859	24859					0.008294810348502324
LKEEPTSLT	9	Unmodified	_LKEEPTSLT_					0	0	0			REV__ENST00000538014.2_1_Y:21751423-21751552:+|nuORF	REV__ENST00000538014.2_1_Y:21751423-21751552:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.27691650390625	2	509.276772	1016.53899	0.93428	0.00047581	-1.0847	-0.00055239	-0.15038	-7.6586E-05	509.2760244278188	26.638	0.40255	26.638	26.494	26.897	0					18	9	3	0	0	0	0.10915	1	9224	9224		77.318	2.2743	1	364190	+		24521	13349	16106	16167	24860	24860					0.031383131409029374
LKEGKGQL	8	Unmodified	_LKEGKGQL_					0	0	0			REV__THAP6|p.R99G|1|0.29|ENSG00000174796|chr4:75521742-75521742|A/G|missense_variant	REV__THAP6|p.R99G|1|0.29|ENSG00000174796|chr4:75521742-75521742|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.76348876953125	2	436.763635	871.512717	-0.90722	-0.00039624	0.39724	0.0001735	-0.50998	-0.00022274	436.76377078123403	20.894	0.16855	20.894	20.841	21.01	0					10	5	3	0	0	0	0.24622	1	5917	5917		108.09	0	1	232020	+		24522	21637	16107	16168	24861	24861					0.071820887600893
LKEGKGQL	8	Unmodified	_LKEGKGQL_					0	0	0			REV__THAP6|p.R99G|1|0.29|ENSG00000174796|chr4:75521742-75521742|A/G|missense_variant	REV__THAP6|p.R99G|1|0.29|ENSG00000174796|chr4:75521742-75521742|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.763427734375	2	436.763635	871.512717	-0.64282	-0.00028076	0.26075	0.00011389	-0.38207	-0.00016687	436.7637341823821	20.995	0.1591	20.995	20.919	21.078	0					8	4	3	0	0	0	0.23367	1	6012	6012		120.62	7.2094	1	363050	+		24523	21637	16107	16168	24862	24862					0.071820887600893
LKELGTKY	8	Unmodified	_LKELGTKY_					0	0	0		ENST00000518663.1_1_8:8873876-8973944:+|nuORF;ENST00000520332.5_1_8:8869238-8946074:+|nuORF;ENSG00000104626|ENST00000250263|ERI1	ENST00000518663.1_1_8:8873876-8973944:+|nuORF	ENST00000518663.1_1_8:8873876-8973944:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2786865234375	2	476.279118	950.543683	-1.5275	-0.00072753	0.9244	0.00044027	-0.60313	-0.00028726	476.2795718401925	32.387	0.2374	32.387	32.317	32.555	0					20	9	3	0	0	0	0.73426	1	10799	10799		29.15	29.15	1	309870			24524	2297	16108	16169	24863	24863					0.06643242074335376
LKEMPVNK	8	Unmodified	_LKEMPVNK_					0	0	0		tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1	tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1	tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27935791015625	2	479.773145	957.531738	0.66978	0.00032134	0.33546	0.00016094	1.0052	0.00048229	479.7699442512488	30.166	0.74925	30.166	29.9	30.649	0					34	16	3	0	0	0	0.30437	1	11230	11230		82.305	0	1	1121300			24525	23027	16109	16170	24864	24864					0.05127302059486283
LKENLDRRE	9	Unmodified	_LKENLDRRE_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000138771|ENST00000296043|SHROOM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.8190307617188	2	586.822744	1171.63093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.714	1	36.714	36.214	37.214	0								0	0	0	0.28666	1	13145	13145		37.812	2.6595	1				24526	4289;4757	16110	16171	24865	24865					0.05198416277949036
LKERNCVY	8	Unmodified	_LKERNCVY_					0	0	0			REV__nc|ENSG00000197006|Q9H1A3-2|METTL9	REV__nc|ENSG00000197006|Q9H1A3-2|METTL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7643432617188	2	512.765852	1023.51715	0.070275	3.6035E-05	-3.153	-0.0016168	-3.0828	-0.0015807	512.764258948441	29.315	0.30885	29.315	29.207	29.515	0					10	6	3	0	0	0	0.74117	1	10739	10739		28.254	0	1	145820	+		24527	17301	16111	16172	24866	24866					0.006332299113410045
LKETCRRAQ	9	Unmodified	_LKETCRRAQ_					0	0	0		ADAMTSL2|p.H950Tfs*?|1|0.45|ENSG00000197859|chr9:133574850-133574850|C/-|frameshift_variant	ADAMTSL2|p.H950Tfs*?|1|0.45|ENSG00000197859|chr9:133574850-133574850|C/-|frameshift_variant	ADAMTSL2|p.H950Tfs*?|1|0.45|ENSG00000197859|chr9:133574850-133574850|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.8011474609375	2	552.800757	1103.58696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.724	1	21.724	21.224	22.224	0								0	0	0	0.11963	1	6027	6027		60.118	0	1				24528	62	16112	16173	24867	24867					0.039311085799454304
LKETIISK	8	Unmodified	_LKETIISK_					0	0	0			REV__ENSG00000163918|ENST00000296273|RFC4	REV__ENSG00000163918|ENST00000296273|RFC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.29498291015625	2	466.294768	930.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.629	1	44.629	44.129	45.129	0								0	0	0	1.7419	1	16705	16705		45.972	0	1		+		24529	15934	16113	16174	24868	24868					0.10691815108418723
LKEYLKEY	8	Unmodified	_LKEYLKEY_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3033447265625	2	543.297507	1084.58046	3.6369	0.0019759	3.6396	0.0019774	7.2765	0.0039533	543.3012630526183	35.997	0.61395	35.997	35.603	36.217	0					20	12	3	0	0	0	0.34592	1	13942	13942		77.318	9.8239	1	485900	+		24530	13889	16114	16175	24869	24869					0.04155493900248075
LKEYSEEK	8	Unmodified	_LKEYSEEK_					0	0	0		tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2597045898438	2	513.261122	1024.50769	0.083995	4.3111E-05	-2.9079	-0.0014925	-2.8239	-0.0014494	513.2597275698768	15.605	0.21715	15.605	15.497	15.714	0					5	4	2	0	0	0	0.64144	1	4165	4165		42.396	0	1	212540			24531	22986	16115	16176	24870	24870					-0.0035825989318709617
LKFDLSQPG	9	Unmodified	_LKFDLSQPG_					0	0	0			REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.27435302734375	2	502.7742	1003.53385	0.99178	0.00049864	-1.1703	-0.00058839	-0.17852	-8.9754E-05	503.27390974190337	28.688	0.56258	28.688	28.365	28.927	0					18	11	2	0	0	0	0.12834	1	10544	10544		76.774	23.837	1	821300	+		24532	22141	16116	16177	24871	24871					0.03222054068953639
LKFIVDPK	8	Unmodified	_LKFIVDPK_					0	0	0			REV__ENSG00000198040|ENST00000539354|ZNF84;REV__ENSG00000221994|ENST00000276054|ZNF630	REV__ENSG00000221994|ENST00000276054|ZNF630	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.29937744140625	2	480.299853	958.585153	0.92986	0.00044661	-1.6161	-0.00077622	-0.68625	-0.0003296	480.29911618380225	44.53	0.26459	44.53	44.38	44.644	0					15	10	3	0	0	0	0.71588	1	17847	17847		31.53	4.7337	1	116260	+		24533	17614;17378	16117	16178	24872	24872					0.10420422833658449
LKFNYSTAHS	10	Unmodified	_LKFNYSTAHS_					0	0	0		nc|ENSG00000196083|Q9NPH3-3|IL1RAP;nc|ENSG00000196083|Q9NPH3-2|IL1RAP;ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-3|IL1RAP	nc|ENSG00000196083|Q9NPH3-3|IL1RAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	584.295654296875	2	584.293288	1166.57202	0.45016	0.00026303	3.2061	0.0018733	3.6563	0.0021363	584.2949468242458	32.91	0.13863	32.91	32.827	32.965	0					9	5	2	0	0	0	0.56931	1	10666	10666		37.812	6.2817	1	66363			24534	7321	16118	16179	24873	24873					-0.004600600163939816
LKGDNLPQY	9	Unmodified	_LKGDNLPQY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.27783203125	2	524.277106	1046.53966	0.71672	0.00037576	-0.063042	-3.3051E-05	0.65368	0.00034271	524.27706967799	31.753	0.30789	31.753	31.646	31.954	0					38	13	4	0	0	0	0.41113	1	10199	10199		40.778	1.5253	1	729320			24535	7741	16119	16180	24874	24874					0.01825152580613576
LKGDRAAA	8	Unmodified	_LKGDRAAA_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.23248291015625	2	401.232502	800.450451	-1.3322	-0.00053453	0.44299	0.00017774	-0.88923	-0.00035679	401.2329175047123	24.898	0.13837	24.898	24.806	24.944	0					6	4	2	0	0	0	0.78978	1	7691	7691		21.96	1.013	1	48981	+		24536	14901	16120	16181	24875	24875					0.04224362411741822
LKGIPTVMA	9	Unmodified	_LKGIPTVMA_					0	0	0			REV__ENST00000589450.5_1_18:53745418-53763461:+|nuORF	REV__ENST00000589450.5_1_18:53745418-53763461:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2802734375	2	465.278063	928.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.732	1	50.732	50.232	51.232	0								0	0	0	0.3304	1	19957	19957		29.15	3.6994	1		+		24537	20509	16121	16182	24876	24876					0.07444490064870024
LKGRGSTFRTV	11	Unmodified	_LKGRGSTFRTV_					0	0	0		ENST00000345097.8_1_14:89625883-89626123:-|nuORF	ENST00000345097.8_1_14:89625883-89626123:-|nuORF	ENST00000345097.8_1_14:89625883-89626123:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	611.3567504882812	2	611.356754	1220.69895	0.36337	0.00022215	-1.2697	-0.00077625	-0.90634	-0.0005541	611.355745289438	52.407	0.85828	52.407	52.155	53.014	0					68	52	2	0	0	0	0.73562	1	15538	15538		24.232	6.7638	1	80626			24538	8759	16122	16183	24877	24877					0.09743285928584555
LKGTKGVVAI	10	Unmodified	_LKGTKGVVAI_					0	0	0		tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.2183532714844	3	329.218332	984.633166	0.98655	0.00032479	-1.3399	-0.00044111	-0.35332	-0.00011632	329.21781570022944	33.76	0.16283	33.76	33.67	33.833	0					7	4	2	0	0	0	0.7005	1	12526	12526		20.837	0	1	62462			24539	22920	16123	16184	24878	24878					0.14023496753691234
LKHGDFSL	8	Unmodified	_LKHGDFSL_					0	0	0			REV__nc|ENSG00000144559|Q96BW9|TAMM41	REV__nc|ENSG00000144559|Q96BW9|TAMM41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.74786376953125	2	458.747985	915.481417	-0.96185	-0.00044125	0.74855	0.0003434	-0.2133	-9.7849E-05	458.74826352984996	40.571	0.17753	40.571	40.486	40.664	0					14	10	2	0	0	0	0.49216	1	13564	13564		60.972	0	1	112060	+		24540	21057	16124	16185	24879	24879					0.020295157259852203
LKHLESFY	8	Unmodified	_LKHLESFY_					0	0	0		ENST00000474370.1_1_7:33138787-33148984:-|nuORF;ENSG00000164610|ENST00000297157|RP9	ENST00000474370.1_1_7:33138787-33148984:-|nuORF	ENST00000474370.1_1_7:33138787-33148984:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7771606445312	2	518.776742	1035.53893	0.50408	0.0002615	0.42609	0.00022104	0.93017	0.00048255	518.7769347066675	21.613	0.14396	21.613	21.539	21.683	0					8	4	2	0	0	0	0.63077	1	5984	5984		44.117	5.3107	1	240310			24541	5709	16125	16186	24880	24880					0.022583579315551106
LKHLESFY	8	Unmodified	_LKHLESFY_					0	0	0		ENST00000474370.1_1_7:33138787-33148984:-|nuORF;ENSG00000164610|ENST00000297157|RP9	ENST00000474370.1_1_7:33138787-33148984:-|nuORF	ENST00000474370.1_1_7:33138787-33148984:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7771606445312	2	518.776742	1035.53893	0.056146	2.9127E-05	1.0819	0.00056127	1.1381	0.0005904	518.7771008678221	21.906	0.22175	21.906	21.809	22.031	0					13	5	4	0	0	0	0.60719	1	7046	7046		47.916	3.5384	1	740800			24542	5709	16125	16186	24881	24881					0.022583579315551106
LKHMESRQK	9	Unmodified	_LKHMESRQK_					0	0	0		ENST00000464104.5_1_9:98997744-99012284:-|nuORF;nc|ENSG00000130948|P37058-2|HSD17B3;ENSG00000130948|ENST00000375263|HSD17B3	ENST00000464104.5_1_9:98997744-99012284:-|nuORF	ENST00000464104.5_1_9:98997744-99012284:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.2133483886719	3	386.213364	1155.61826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.849	1	13.849	13.349	14.349	0								0	0	0	0.35737	1	3313	3313		23.523	3.4922	1				24543	3685	16126	16187	24882	24882					0.0466768161404616
LKIGLQAKR	9	Unmodified	_LKIGLQAKR_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.8975830078125	3	342.897593	1025.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.392	1	18.392	17.892	18.892	0								0	0	0	0.33029	1	5497	5497		29.17	1.0886	1				24544	241	16127	16188	24883	24883					0.15914007739161207
LKKEKQAAY	9	Unmodified	_LKKEKQAAY_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1;COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant;COL17A1|p.P1229Rfs*22|1|0.39|ENSG00000065618|chr10:104034701-104034701|G/-|frameshift_variant	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.21331787109375	3	360.213358	1077.61824	-0.094674	-3.4103E-05	0.69725	0.00025116	0.60258	0.00021706	360.2135185968992	20.923	0.11652	20.923	20.876	20.992	0					5	3	2	0	0	0	0.61124	1	5981	5981		19.104	2.6304	1	42255			24545	1377	16128	16189	24884	24884					0.0825400488570267
LKKEVESQL	9	Unmodified	_LKKEVESQL_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.54412841796875	3	358.544885	1072.61282	-0.90511	-0.00032452	0.011884	4.2609E-06	-0.89322	-0.00032026	358.5450577181369	26.779	0.11021	26.779	26.734	26.844	0					6	4	2	0	0	0	0.35021	1	8465	8465		45.972	0	1	38672			24546	1639	16129	16190	24885	24885					0.07942281303235177
LKKGVNEEF	9	Unmodified	_LKKGVNEEF_					0	0	0			REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2930908203125	2	532.292756	1062.57096	-0.29244	-0.00015566	0.61664	0.00032823	0.3242	0.00017257	532.2932791658056	27.936	0.20352	27.936	27.849	28.052	0					14	7	3	0	0	0	0.1115	1	8939	8939		76.774	0.60445	1	365890	+		24547	14264	16130	16191	24886	24886					0.042177256146942455
LKKVLSDVA	9	Unmodified	_LKKVLSDVA_					0	0	0			REV__SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	REV__SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.8744201660156	3	324.874454	971.601532	0.63843	0.00020741	-0.79317	-0.00025768	-0.15474	-5.0271E-05	324.8741929561698	20.892	0.14308	20.892	20.799	20.942	0					8	3	3	0	0	0	0.55282	1	6571	6571		19.997	0	1	494370	+		24548	14291	16131	16192	24887	24887					0.11459503999742537
LKKYLLDF	8	Unmodified	_LKKYLLDF_					0	0	0		ENST00000546766.5_1_12:98989167-98989365:+|nuORF	ENST00000546766.5_1_12:98989167-98989365:+|nuORF	ENST00000546766.5_1_12:98989167-98989365:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.31201171875	2	520.312961	1038.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.977	1	49.977	49.477	50.477	0								0	0	0	1.7419	1	19749	19749		25.45	4.9683	1				24549	10582	16132	16193	24888	24888					0.0936069200511156
LKKYRPYSRDS	11	Unmodified	_LKKYRPYSRDS_					0	0	0			REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	706.8877563476562	2	706.885875	1411.7572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.428	1	34.428	33.928	34.928	0								0	0	0	0.45674	1	11610	11610		20.837	0.80668	1		+		24550	21706	16133	16194	24889	24889					0.06778922783200869
LKLAEKSP	8	Unmodified	_LKLAEKSP_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2739562988281	2	443.273835	884.533118	-0.49779	-0.00022066	0.50964	0.00022591	0.011849	5.2523E-06	443.2740529982636	34.353	0.21265	34.353	34.294	34.506	0					6	4	2	0	0	0	0.32597	1	13174	13174		79.713	0.26157	1	316830	+		24551	14382	16134	16195	24890	24890					0.08623259419891838
LKLDQFQTL	9	Unmodified	_LKLDQFQTL_					0	0	0			REV__nc|ENSG00000214954|Q6ZNQ3-2|LRRC69	REV__nc|ENSG00000214954|Q6ZNQ3-2|LRRC69	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.317626953125	2	553.316232	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.739	1	39.739	39.239	40.239	0								0	0	0	0.20646	1	15727	15727		42.864	2.8061	1		+		24552	21212	16135	16196	24891	24891					0.06978585165848017
LKLFGKAA	8	Unmodified	_LKLFGKAA_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.273681640625	2	424.273638	846.532724	0.37485	0.00015904	-0.38662	-0.00016403	-0.011775	-4.9958E-06	424.2734932553029	25.988	0.1662	25.988	25.901	26.067	0					8	3	3	0	0	0	0.75243	1	9247	9247		26.796	1.3459	1	191620	+		24553	13697	16136	16197	24892	24892					0.10331884490699395
LKLFTRCLAP	10	Carbamidomethyl (C)	_LKLFTRC(Carbamidomethyl (C))LAP_	LKLFTRC(1)LAP		LKLFTRC(61)LAP		0	1	0		RAD21|p.T394A|1|0.21|ENSG00000164754|chr8:116852690-116852690|T/C|missense_variant	RAD21|p.T394A|1|0.21|ENSG00000164754|chr8:116852690-116852690|T/C|missense_variant	RAD21|p.T394A|1|0.21|ENSG00000164754|chr8:116852690-116852690|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.8562622070312	2	609.855001	1217.69545	2.9283	0.0017858	-0.77587	-0.00047317	2.1524	0.0013127	609.8545141125965	29.027	0.31567	29.027	28.925	29.241	0					17	6	4	0	0	0	0.357	1	10578	10578		60.972	26.799	1	1754100			24554	11994	16137	16198	24893	24893	476				0.09530899830383532
LKLPGEPQS	9	Unmodified	_LKLPGEPQS_					0	0	0			REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.77362060546875	2	484.7742	967.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.823	1	39.823	39.323	40.323	0								0	0	0	0.3245	1	14181	14181		30.318	0	1		+		24555	12119	16138	16199	24894	24894					0.04878054068956317
LKLRDMWI	8	Unmodified	_LKLRDMWI_					0	0	0			REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8119506835938	2	537.810062	1073.60557	3.3504	0.0018019	0.10453	5.6216E-05	3.455	0.0018581	537.8099004766892	27.273	0.62382	27.273	26.919	27.543	0					25	12	4	0	0	0	0.3961	1	9755	9755		71.296	71.296	1	1999400	+		24556	21788	16139	16200	24895	24895					0.0717127022180648
LKLSGEVLR	9	Unmodified	_LKLSGEVLR_					0	0	0		ENST00000339374.10_1_14:21458030-21458174:+|nuORF	ENST00000339374.10_1_14:21458030-21458174:+|nuORF	ENST00000339374.10_1_14:21458030-21458174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8197937011719	2	507.818941	1013.62333	0.091007	4.6215E-05	1.0681	0.0005424	1.1591	0.00058862	507.81986006508197	14.724	0.075613	14.724	14.656	14.731	0					4	2	2	0	0	0	0.22837	1	3170	3170		51.335	0	1	56257			24557	8719	16140	16201	24896	24896					0.11706308748341598
LKLVCGSH	8	Unmodified	_LKLVCGSH_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.740966796875	2	428.739105	855.463658	-0.42547	-0.00018241	3.0375	0.0013023	2.6121	0.0011199	428.74046329462084	26.21	0.31617	26.21	25.949	26.265	0					10	6	2	0	0	0	0.61938	1	9243	9243		45.952	5.3793	1	186520			24558	5576	16141	16202	24897	24897					0.030144771994969233
LKLVEQSK	8	Unmodified	_LKLVEQSK_					0	0	0			REV__RARS2|p.K352Sfs*10|1|0.24|ENSG00000146282|chr6:87520237-87520237|T/-|frameshift_variant	REV__RARS2|p.K352Sfs*10|1|0.24|ENSG00000146282|chr6:87520237-87520237|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7926940917969	2	472.792392	943.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.413	1	20.413	19.913	20.913	0								0	0	0	1.7419	1	5696	5696		18.324	0	1		+		24559	15309	16142	16203	24898	24898					0.0961893096566655
LKLVNASV	8	Unmodified	_LKLVNASV_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;ENST00000393501.5_1_3:124103736-124207203:+|nuORF;nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN	nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000160145|O60229-2|KALRN	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2680969238281	2	422.268553	842.522553	-0.030956	-1.3072E-05	-0.61747	-0.00026074	-0.64843	-0.00027381	422.26825970923716	35.829	0.27753	35.829	35.712	35.99	0					19	10	3	0	0	0	0.46905	1	12778	12778		63.306	4.5243	1	274400			24560	1182;5341	16143	16204	24899	24899					0.09499276765473041
LKMEEEQKL	9	Unmodified	_LKMEEEQKL_					0	0	0		PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant;ENSG00000197724|ENST00000359246|PHF2	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.2066650390625	3	383.205763	1146.59546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.971	1	13.971	13.471	14.471	0								0	0	0	0.28996	1	2880	2880		36.447	0	1				24561	7491	16144	16205	24900	24900					0.028026177059246038
LKMGMETL	8	2 Oxidation (M)	_LKM(Oxidation (M))GM(Oxidation (M))ETL_		LKM(1)GM(1)ETL		LKM(94)GM(94)ETL	0	0	2		ENST00000532416.1_1_11:7647064-7652277:+|nuORF;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2	ENST00000532416.1_1_11:7647064-7652277:+|nuORF	ENST00000532416.1_1_11:7647064-7652277:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7353515625	2	477.735371	953.456189	-0.31383	-0.00014993	0.020617	9.8496E-06	-0.29322	-0.00014008	477.7353757752221	24.652	0.22122	24.652	24.519	24.741	0					8	5	2	0	0	0	0.26534	1	8312	8312		94.006	16.689	1	778530			24562	5892	16145	16206	24901	24901		237;238			-0.02240043183110174
LKMMETLE	8	Unmodified	_LKMMETLE_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-2|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.75103759765625	2	497.751021	993.48749	-0.72101	-0.00035888	0.82324	0.00040977	0.10222	5.0883E-05	497.7514018549795	28.804	0.40845	28.804	28.695	29.104	0					18	8	3	0	0	0	0.32815	1	10582	10582		79.451	10.966	1	727690			24563	5771	16146	16207	24902	24902					-0.009514701490047628
LKNKLCSCK	9	Unmodified	_LKNKLCSCK_					0	0	0		DISC1|p.R735Gfs*12|1|0.33|ENSG00000162946|chr1:232008939-232008939|C/-|frameshift_variant;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENSG00000162946|ENST00000439617|DISC1	DISC1|p.R735Gfs*12|1|0.33|ENSG00000162946|chr1:232008939-232008939|C/-|frameshift_variant	DISC1|p.R735Gfs*12|1|0.33|ENSG00000162946|chr1:232008939-232008939|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.19256591796875	3	346.192912	1035.55691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.126	1	13.126	12.626	13.626	0								0	0	0	0.35377	1	2969	2969		24.519	1.4767	1				24564	795	16147	16208	24903	24903					0.040550335903844825
LKNLPELV	8	Unmodified	_LKNLPELV_					0	0	0			REV__TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	REV__TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2894592285156	2	463.289485	924.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.599	1	34.599	34.099	35.099	0								0	0	0	1.7419	1	12261	12261		20.947	3.582	1		+		24565	17129	16148	16209	24904	24904					0.0991183245398588
LKNMGFLVG	9	Unmodified	_LKNMGFLVG_					0	0	0		ENST00000558090.2_1_15:83513972-83514182:-|nuORF	ENST00000558090.2_1_15:83513972-83514182:-|nuORF	ENST00000558090.2_1_15:83513972-83514182:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7752380371094	2	489.775688	977.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.983	1	36.983	36.483	37.483	0								0	0	0	0.37146	1	13243	13243		19.36	1.0356	1				24566	10674	16149	16210	24905	24905					0.047156059221151736
LKNNIFSS	8	Unmodified	_LKNNIFSS_					0	0	0			REV__ENST00000347869.7_1_3:50144979-50147044:+|nuORF	REV__ENST00000347869.7_1_3:50144979-50147044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7529602050781	2	461.753267	921.491981	-0.44534	-0.00020564	-0.27397	-0.00012651	-0.71931	-0.00033214	461.7531930223699	32.421	0.15024	32.421	32.367	32.517	0					12	6	3	0	0	0	0.46905	1	10475	10475		63.306	7.8021	1	197780	+		24567	18488	16150	16211	24906	24906					0.028094983804294316
LKNNIFSS	8	Unmodified	_LKNNIFSS_					0	0	0			REV__ENST00000347869.7_1_3:50144979-50147044:+|nuORF	REV__ENST00000347869.7_1_3:50144979-50147044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.75274658203125	2	461.753267	921.491981	-2.4878	-0.0011488	1.8486	0.00085359	-0.63924	-0.00029517	461.75415639658297	32.455	0.16061	32.455	32.378	32.539	0					9	5	2	0	0	0	0.49216	1	11290	11290		60.972	3.1607	1	108070	+		24568	18488	16150	16211	24907	24907					0.028094983804294316
LKNNQTGLTL	10	Unmodified	_LKNNQTGLTL_					0	0	0		tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.8802490234375	3	367.880267	1100.61897	0.47793	0.00017582	-0.31196	-0.00011476	0.16598	6.106E-05	367.8801310165964	13.729	0.15342	13.729	13.625	13.778	0					5	3	2	0	0	0	0.70274	1	3419	3419		21.686	5.679	1	318590			24569	22633	16151	16212	24908	24908					0.07268799534745085
LKNTTDKK	8	Unmodified	_LKNTTDKK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.26885986328125	2	474.279649	946.544745	0.69788	0.00033099	-1.4851	-0.00070436	-0.78723	-0.00037337	474.27903366938347	11.893	3.6471	11.893	11.767	15.414	0					202	83	5	0	0	0	0.6088	1	3127	3127		47.657	1.6851	1	247480000			24570	314	16152	16213	24909	24909					0.06933456443232444
LKNYINSH	8	Unmodified	_LKNYINSH_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7655029296875	2	494.764166	987.513779	0.69263	0.00034269	-2.8838	-0.0014268	-2.1911	-0.0010841	494.7652123122174	33.404	0.59338	33.404	33.176	33.77	0					53	14	6	0	0	0	0.37144	1	12771	12771		74.255	7.8258	1	1503100			24571	22812	16153	16214	24910	24910					0.01952303128996391
LKNYKVTEL	9	Unmodified	_LKNYKVTEL_					0	0	0		tr|U7T3T2|U7T3T2_FUSNUPeptidechainreleasefactor2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfBPE=3SV=1	tr|U7T3T2|U7T3T2_FUSNUPeptidechainreleasefactor2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfBPE=3SV=1	tr|U7T3T2|U7T3T2_FUSNUPeptidechainreleasefactor2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.323486328125	2	554.324057	1106.63356	0.15864	8.7936E-05	0.3336	0.00018492	0.49224	0.00027286	554.3241331171768	23.068	0.57822	23.068	22.971	23.549	0					59	19	5	0	0	0	0.27249	1	7009	7009		21.96	0	1	5498500			24572	22975	16154	16215	24911	24911					0.08450871682885008
LKPELQTAL	9	Unmodified	_LKPELQTAL_					0	0	0		LATS1|p.K662Nfs*3|1|0.44|ENSG00000131023|chr6:149683103-149683103|T/-|frameshift_variant;nc|ENSG00000131023|O95835-2|LATS1;LATS1|p.E689Nfs*18|1|0.35|ENSG00000131023|chr6:149680404-149680404|T/-|frameshift_variant;LATS1|p.Y808Nfs*12|1|0.09|ENSG00000131023|chr6:149680046-149680047|-/ATTTATT|frameshift_variant;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;LATS1|p.F1039Lfs*19|1|0.19|ENSG00000131023|chr6:149662005-149662005|A/-|frameshift_variant;ENSG00000131023|ENST00000543571|LATS1	LATS1|p.K662Nfs*3|1|0.44|ENSG00000131023|chr6:149683103-149683103|T/-|frameshift_variant	LATS1|p.K662Nfs*3|1|0.44|ENSG00000131023|chr6:149683103-149683103|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.8057861328125	2	506.8055	1011.59645	0.84801	0.00042978	-0.94442	-0.00047864	-0.096407	-4.886E-05	506.8050778869765	34.077	0.15565	34.077	33.998	34.154	0					7	4	2	0	0	0	0.22837	1	12654	12654		51.335	6.9583	1	189270			24573	3691	16155	16216	24912	24912					0.09111200137124342
LKPGALSNSE	10	Unmodified	_LKPGALSNSE_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2745666503906	2	508.274564	1014.53457	0.90091	0.00045791	-2.5997	-0.0013213	-1.6988	-0.00086343	508.2728400786595	23.653	0.40783	23.653	23.565	23.973	0					17	9	4	0	0	0	0.48965	1	7873	7873		46.457	3.5925	1	856560			24574	3367	16156	16217	24913	24913					0.027888487179893673
LKPQEQLTL	9	Unmodified	_LKPQEQLTL_					0	0	0		ENSG00000188573|ENST00000338333|FBLL1	ENSG00000188573|ENST00000338333|FBLL1	ENSG00000188573|ENST00000338333|FBLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.8192749023438	2	535.316232	1068.61791	-1.3611	-0.0007286	2.8719	0.0015374	1.5109	0.00080879	535.317438241216	35.567	0.16352	35.567	35.459	35.622	0					8	6	2	0	0	0	0.46194	1	12674	12674		21.96	0	1	57499			24575	7257	16157	16218	24914	24914					0.08634585165850694
LKPTDSYSS	9	Unmodified	_LKPTDSYSS_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;ENST00000568469.5_1_16:18995385-19051723:+|nuORF	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2460632324219	2	499.245472	996.476391	1.06	0.00052922	0.16853	8.4138E-05	1.2286	0.00061336	499.2454728596552	31.878	0.91808	31.878	31.403	32.321	0					48	18	3	0	0	0	0.37197	1	11919	11919		44.117	3.5442	1	631490			24576	6243	16158	16219	24915	24915					-0.02198832927285821
LKPYDRLLQ	9	Unmodified	_LKPYDRLLQ_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.3394775390625	2	573.337498	1144.66044	3.3603	0.0019266	-0.39792	-0.00022814	2.9624	0.0016984	573.3374399791189	25.489	0.26952	25.489	25.381	25.65	0					15	5	4	0	0	0	0.063823	1	8946	8946		90.37	2.6734	1	1914400			24577	5146	16159	16220	24916	24916					0.09389980294099587
LKQEEIRR	8	Unmodified	_LKQEEIRR_					0	0	0			REV__NEXN|p.N590Tfs*5|1|0.2|ENSG00000162614|chr1:77942566-77942566|A/-|frameshift_variant	REV__NEXN|p.N590Tfs*5|1|0.2|ENSG00000162614|chr1:77942566-77942566|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3176879882812	2	536.317097	1070.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.636	1	17.636	17.136	18.136	0								0	0	0	1.7419	1	5125	5125		53.351	0	1		+		24578	15824	16160	16221	24917	24917					0.08715638974467765
LKQEEYQIQ	9	Unmodified	_LKQEEYQIQ_					0	0	0		ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.8060913085938	2	589.806228	1177.5979	0.12244	7.2218E-05	-0.60469	-0.00035665	-0.48225	-0.00028443	589.8055823116154	27.919	0.094503	27.919	27.839	27.934	0					8	3	3	0	0	0	0.047855	1	8653	8653		101.6	13.424	1	130070			24579	3865	16161	16222	24918	24918					0.016207894352419316
LKQLHENQ	8	Unmodified	_LKQLHENQ_					0	0	0		ENST00000425406.5_1_7:86817376-86824453:+|nuORF;DMTF1|p.N415Tfs*28|1|0.3|ENSG00000135164|chr7:87188128-87188128|A/-|frameshift_variant;ENST00000547146.6_1_7:86813892-86824453:+|nuORF;ENST00000447863.5_1_7:86811523-86824453:+|nuORF;nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1	ENST00000425406.5_1_7:86817376-86824453:+|nuORF	ENST00000425406.5_1_7:86817376-86824453:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2745361328125	2	505.274898	1008.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.383	1	19.383	18.883	19.883	0								0	0	0	1.7419	1	5004	5004		58.782	7.4465	1				24580	805	16162	16223	24919	24919					0.03131688157691315
LKQQLALY	8	Unmodified	_LKQQLALY_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7944030761719	2	488.794935	975.575317	0.78645	0.00038441	-2.1156	-0.0010341	-1.3292	-0.0006497	488.79391375094804	40.581	0.4202	40.581	40.342	40.762	0					11	9	2	0	0	0	0.64096	1	16137	16137		42.474	0	1	103840			24581	1717	16163	16224	24920	24920					0.08655234828256653
LKQVQTKY	8	Unmodified	_LKQVQTKY_					0	0	0			REV__ENST00000463933.5_1_1:86823785-86826204:-|nuORF	REV__ENST00000463933.5_1_1:86823785-86826204:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.534423828125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.498	1	51.498	50.998	51.998	0								0	0	0	1.7419	1	15381	15381		16.473	3.0191	1		+		24582	14332	16164	16225	24921	24921					0.0781033333993264
LKSAEAVGVK	10	Unmodified	_LKSAEAVGVK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant;ENST00000571725.1_1_17:1747258-1757506:+|nuORF	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.30255126953125	2	501.303124	1000.5917	0.030465	1.5272E-05	-0.48408	-0.00024267	-0.45361	-0.0002274	501.3027118261586	27.972	0.16574	27.972	27.863	28.029	0					5	3	2	0	0	0	0.4287	1	10205	10205		53.089	3.0554	1	221480			24583	3782	16165	16226	24922	24922					0.09142315994370165
LKSESLAP	8	Unmodified	_LKSESLAP_					0	0	0			REV__ENST00000358537.7_1_3:58095823-58097578:+|nuORF	REV__ENST00000358537.7_1_3:58095823-58097578:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7418518066406	2	422.742368	843.470183	0.86292	0.00036479	-1.2443	-0.00052604	-0.38143	-0.00016125	422.7418452378457	37.61	0.16934	37.61	37.49	37.659	0					8	5	2	0	0	0	0.57802	1	14723	14723		52.299	0	1	72574	+		24584	18542	16166	16227	24923	24923					0.042186936318557855
LKSFQLVDQ	9	Unmodified	_LKSFQLVDQ_					0	0	0			REV__ENSG00000144026|ENST00000295208|ZNF514	REV__ENSG00000144026|ENST00000295208|ZNF514	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3013916015625	2	539.300581	1076.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.653	1	35.653	35.153	36.153	0								0	0	0	0.28666	1	12065	12065		37.812	2.1932	1		+		24585	15219	16167	16228	24924	24924					0.05138012131760661
LKSLRHTIQ	9	Unmodified	_LKSLRHTIQ_					0	0	0			REV__ENSG00000163424|ENST00000295622|TEX55	REV__ENSG00000163424|ENST00000295622|TEX55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.3357543945312	2	548.33529	1094.65603	0.48815	0.00026767	0.21196	0.00011623	0.70011	0.00038389	548.3354246530594	20.104	0.2847	20.104	20.005	20.29	0					12	6	3	0	0	0	0.12834	1	6190	6190		72.879	10.772	1	1640900	+		24586	15880	16168	16229	24925	24925					0.11248515871170639
LKSLRHTIQ	9	Unmodified	_LKSLRHTIQ_					0	0	0			REV__ENSG00000163424|ENST00000295622|TEX55	REV__ENSG00000163424|ENST00000295622|TEX55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.3359375	2	548.33529	1094.65603	-1.5072	-0.00082643	2.4649	0.0013516	0.95776	0.00052517	548.336830914932	19.819	0.18742	19.819	19.731	19.919	0					8	4	3	0	0	0	0.055856	1	5466	5466		93.195	2.8256	1	460510	+		24587	15880	16168	16229	24926	24926					0.11248515871170639
LKSLRHTIQ	9	Unmodified	_LKSLRHTIQ_					0	0	0			REV__ENSG00000163424|ENST00000295622|TEX55	REV__ENSG00000163424|ENST00000295622|TEX55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.33544921875	2	548.33529	1094.65603	1.8627	0.0010214	-1.2479	-0.00068427	0.61482	0.00033713	548.3344333726562	19.986	0.71546	19.986	19.876	20.591	0					22	14	4	0	0	0	0.055856	1	6282	6282		93.195	13.483	1	5586100	+		24588	15880	16168	16229	24927	24927					0.11248515871170639
LKSNKGVQ	8	Unmodified	_LKSNKGVQ_					0	0	0			REV__ENST00000489995.1_1_3:171483216-171489014:-|nuORF	REV__ENST00000489995.1_1_3:171483216-171489014:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2608642578125	2	437.261259	872.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.71	1	18.71	18.21	19.21	0								0	0	0	1.7419	1	4701	4701		55.504	9.5523	1		+		24589	19706	16169	16230	24928	24928					0.0666120461733044
LKSSIIGKNK	10	Unmodified	_LKSSIIGKNK_					0	0	0		ARFGAP2|p.K216N|1|0.28|ENSG00000149182|chr11:47172305-47172305|C/A|missense_variant	ARFGAP2|p.K216N|1|0.28|ENSG00000149182|chr11:47172305-47172305|C/A|missense_variant	ARFGAP2|p.K216N|1|0.28|ENSG00000149182|chr11:47172305-47172305|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.23236083984375	3	363.232641	1086.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.873	1	19.873	19.373	20.373	0								0	0	0	0.4201	1	5458	5458		14.086	0	1				24590	192	16170	16231	24929	24929					0.13622266811125883
LKSSWTEP	8	Unmodified	_LKSSWTEP_					0	0	0			REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	REV__ENST00000498426.5_1_1:196286396-196434478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2452697753906	2	474.245275	946.475997	-0.59402	-0.00028171	0.26553	0.00012593	-0.32849	-0.00015578	474.24543877906933	41.697	0.66799	41.697	41.53	42.198	0					29	18	2	0	0	0	0.58597	1	16728	16728		51.335	1.8939	1	145520	+		24591	15829	16171	16232	24930	24930					0.0006179214352641793
LKSTDYTLQ	9	Unmodified	_LKSTDYTLQ_					0	0	0		ENST00000222573.4_1_7:20449902-20450115:+|nuORF	ENST00000222573.4_1_7:20449902-20450115:+|nuORF	ENST00000222573.4_1_7:20449902-20450115:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7830200195312	2	534.782222	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.091	1	36.091	35.591	36.591	0								0	0	0	0.27939	1	14032	14032		39.253	1.4413	1				24592	8181	16172	16233	24931	24931					0.01881715515196447
LKSTSHLKL	9	Unmodified	_LKSTSHLKL_					0	0	0			REV__ENST00000258991.7_1_17:62225146-62225452:-|nuORF	REV__ENST00000258991.7_1_17:62225146-62225452:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.819091796875	2	513.818941	1025.62333	3.1804	0.0016342	-2.5478	-0.0013091	0.63265	0.00032507	513.8174201705967	44.434	0.29982	44.434	44.284	44.583	0					20	12	2	0	0	0	0.44593	1	17814	17814		37.812	0	1	77544	+		24593	17999	16173	16234	24932	24932					0.11154308748314179
LKTLCLEAV	9	Unmodified	_LKTLCLEAV_					0	0	0		PRKDC|p.V2400A|1|0.12|ENSG00000253729|chr8:47849235-47849235|A/G|missense_variant	PRKDC|p.V2400A|1|0.12|ENSG00000253729|chr8:47849235-47849235|A/G|missense_variant	PRKDC|p.V2400A|1|0.12|ENSG00000253729|chr8:47849235-47849235|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.190673828125	3	330.528178	988.562703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.308	1	17.308	16.808	17.808	0								0	0	0	0.36359	1	4103	4103		21.686	2.5822	1				24594	11973	16174	16235	24933	24933					0.0679645537372835
LKTTLKPKKVK	11	Unmodified	_LKTTLKPKKVK_					0	0	0		ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.6308898925781	3	428.630624	1282.87004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.357	1	55.357	54.857	55.857	0								0	0	0	0.45674	1	20969	20969		9.2118	0.41249	1				24595	4307	16175	16236	24934	24934					0.23992223247182665
LKTTNAGNF	9	Unmodified	_LKTTNAGNF_					0	0	0		ENST00000295900.10_1_3:63988382-63988544:+|nuORF	ENST00000295900.10_1_3:63988382-63988544:+|nuORF	ENST00000295900.10_1_3:63988382-63988544:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.25592041015625	2	483.256174	964.497795	-0.099156	-4.7918E-05	-0.52082	-0.00025169	-0.61998	-0.00029961	483.25597616286154	28.39	0.15755	28.39	28.291	28.449	0					8	3	3	0	0	0	0.13267	1	10383	10383		71.877	3.0906	1	438490			24596	8452	16176	16237	24935	24935					0.01412596892100737
LKTTVLPFM	9	Unmodified	_LKTTVLPFM_					0	0	0		ENST00000554032.1_1_14:71276930-71281887:+|nuORF	ENST00000554032.1_1_14:71276930-71281887:+|nuORF	ENST00000554032.1_1_14:71276930-71281887:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.30615234375	2	525.306821	1048.59909	0.14668	7.7052E-05	-1.7844	-0.00093736	-1.6377	-0.00086031	525.3056761315931	11.168	0.23531	11.168	11.03	11.265	0					10	8	2	0	0	0	0.61124	1	2259	2259		12.959	0.75233	1	58179			24597	10641	16177	16238	24936	24936					0.07673332270428546
LKTVDKVN	8	Unmodified	_LKTVDKVN_					0	0	0			REV__KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	REV__KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.77642822265625	2	458.776742	915.538931	-2.6379	-0.0012102	1.9208	0.00088124	-0.7171	-0.00032899	458.7777033632587	16.708	0.14563	16.708	16.624	16.769	0					9	5	2	0	0	0	0.54629	1	4020	4020		55.504	7.8469	1	273700	+		24598	13024	16178	16239	24937	24937					0.07778357931567825
LKVAGGEK	8	Unmodified	_LKVAGGEK_					0	0	0			REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant;REV__nc|ENSG00000165521|Q05BV3|EML5	REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.74652099609375	2	401.245078	800.475603	-0.095351	-3.8259E-05	0.024435	9.8046E-06	-0.070916	-2.8455E-05	401.24507463818117	19.461	0.13181	19.461	19.393	19.525	0					10	4	3	0	0	0	0.29286	1	5033	5033		84.916	13.62	1	872820	+		24599	12797;16048	16179	16240	24938	24938					0.0673841721431927
LKVAGGEK	8	Unmodified	_LKVAGGEK_					0	0	0			REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant;REV__nc|ENSG00000165521|Q05BV3|EML5	REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2451171875	2	401.245078	800.475603	-0.39645	-0.00015907	0.22889	9.1842E-05	-0.16756	-6.7232E-05	401.2451215473656	19.819	0.22719	19.819	19.693	19.92	0					11	5	3	0	0	0	0.22071	1	6036	6036		129.68	3.8686	1	2311800	+		24600	12797;16048	16179	16240	24939	24939					0.0673841721431927
LKVAGGEK	8	Unmodified	_LKVAGGEK_					0	0	0			REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant;REV__nc|ENSG00000165521|Q05BV3|EML5	REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.24505615234375	2	401.245078	800.475603	0.41701	0.00016732	-0.47815	-0.00019186	-0.061145	-2.4534E-05	401.2448599017196	19.701	0.1648	19.701	19.593	19.758	0					6	3	2	0	0	0	0.26954	1	6284	6284		143.11	4.8646	1	1186300	+		24601	12797;16048	16179	16240	24940	24940					0.0673841721431927
LKVYKVKAE	9	Unmodified	_LKVYKVKAE_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7987060546875	2	539.336967	1076.65938	0.25066	0.00013519	-0.17766	-9.5817E-05	0.073003	3.9373E-05	539.337096900395	31.077	0.22902	31.077	30.982	31.211	0					9	5	2	0	0	0	0.46194	1	11247	11247		37.159	21.517	1	205280	+		24602	16441	16180	16241	24941	24941					0.12411765925162399
LKWELGQY	8	Unmodified	_LKWELGQY_					0	0	0			REV__ABCB6|p.S490L|1|0.07|ENSG00000115657|chr2:219213935-219213935|G/A|missense_variant	REV__ABCB6|p.S490L|1|0.07|ENSG00000115657|chr2:219213935-219213935|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7766723632812	2	518.776742	1035.53893	-1.3903	-0.00072125	1.3796	0.0007157	-0.01069	-5.5458E-06	518.7770765819	21.711	0.13818	21.711	21.623	21.761	0					5	3	2	0	0	0	0.5676	1	6353	6353		53.351	2.016	1	165230	+		24603	12036	16181	16242	24942	24942					0.022583579315551106
LKWTVFAKN	9	Unmodified	_LKWTVFAKN_					0	0	0			REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.8206787109375	2	553.821484	1105.62842	-1.1643	-0.00064482	-1.2446	-0.0006893	-2.4089	-0.0013341	553.8208718295731	26.517	0.31675	26.517	26.37	26.687	0					16	7	3	0	0	0	0.51991	1	8531	8531		6.3127	0	1	147370	+		24604	12725	16182	16243	24943	24943					0.07982612610953765
LKYSFHDVK	9	Unmodified	_LKYSFHDVK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.8062744140625	2	568.808574	1135.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.057	1	23.057	22.557	23.557	0								0	0	0	0.22284	1	6974	6974		47.657	1.2006	1				24605	6453	16183	16244	24944	24944					0.04021718368676375
LLAAGSHVI	9	Unmodified	_LLAAGSHVI_					0	0	0		ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.76544189453125	2	440.766178	879.517802	-0.28578	-0.00012596	-0.19495	-8.593E-05	-0.48073	-0.00021189	440.7660076967503	35.366	0.28008	35.366	35.275	35.555	0					32	14	3	0	0	0	0.27781	1	11574	11574		52.299	11.727	1	513030			24606	6151	16184	16245	24945	24945					0.07322392622711504
LLAAGSVAL	9	Unmodified	_LLAAGSVAL_					0	0	0		sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1;sp|P16756|UL14_HCMVAUncharacterizedproteinUL14OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL14PE=3SV=2	sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.75506591796875	2	407.755278	813.496004	1.1858	0.00048351	-1.2794	-0.0005217	-0.093648	-3.8186E-05	407.7547465590494	37.623	0.16505	37.623	37.56	37.725	0					8	5	2	0	0	0	0.14734	1	14735	14735		68.485	5.1784	1	71123			24607	22469	16185	16246	24946	24946					0.08179587874133176
LLAAKQKAQ	9	Unmodified	_LLAAKQKAQ_					0	0	0			REV__ENSG00000161904|ENST00000293760|LEMD2	REV__ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2536315917969	2	485.805834	969.597115	-0.56018	-0.00027214	-0.13829	-6.7184E-05	-0.69847	-0.00033932	485.80572965421686	12.798	0.40474	12.798	12.542	12.947	0					16	9	3	0	0	0	0.5879	1	2870	2870		23.042	0	1	664370	+		24608	15790	16186	16247	24947	24947					0.11110039576851705
LLADSIRA	8	Unmodified	_LLADSIRA_					0	0	0			REV__nc|ENSG00000203485|Q27J81-3|INF2	REV__nc|ENSG00000203485|Q27J81-3|INF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.7554931640625	2	429.75581	857.497067	-0.56871	-0.0002444	0.40443	0.0001738	-0.16428	-7.06E-05	429.75596198928463	32.299	0.297	32.299	32.167	32.464	0					9	7	2	0	0	0	0.46905	1	11869	11869		63.306	0	1	187730	+		24609	17455	16187	16248	24948	24948					0.06261802243045622
LLAGGAILAL	10	Unmodified	_LLAGGAILAL_					0	0	0		nc|ENSG00000149452|Q8TCC7-3|SLC22A8;nc|ENSG00000149452|Q8TCC7-5|SLC22A8;nc|ENSG00000149452|Q8TCC7-4|SLC22A8;ENSG00000149452|ENST00000336232|SLC22A8;nc|ENSG00000149452|Q8TCC7-2|SLC22A8	nc|ENSG00000149452|Q8TCC7-3|SLC22A8	nc|ENSG00000149452|Q8TCC7-3|SLC22A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.299560546875	2	456.299853	910.585153	-0.43076	-0.00019656	-0.26287	-0.00011995	-0.69363	-0.0003165	456.29970123547747	35.841	0.25951	35.841	35.737	35.996	0					10	5	3	0	0	0	0.21242	1	13863	13863		77.944	12.046	1	276840			24610	4884	16188	16249	24949	24949					0.1262842283365444
LLAGGASP	8	Unmodified	_LLAGGASP_					0	0	0			REV__chr17:78119046-78119257|110|14.03|0.84|4.06|-|0|TMC6,None|1	REV__chr17:78119046-78119257|110|14.03|0.84|4.06|-|0|TMC6,None|1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.197998046875	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.323	1	30.323	29.823	30.823	0								0	0	0	1.7419	1	9947	9947		28.254	1.4582	1		+		24611	12476	16189	16250	24950	24950					0.025824837431400738
LLAGPHILS	9	Unmodified	_LLAGPHILS_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.78155517578125	2	460.781828	919.549102	0.72266	0.00033299	-0.56984	-0.00026257	0.15282	7.0416E-05	460.78133780181093	28.725	0.26511	28.725	28.613	28.878	0					15	5	4	0	0	0	0.41354	1	10569	10569		40.573	1.7665	1	589970	+		24612	16142	16190	16251	24951	24951					0.08610965656805547
LLAKAVQSI	9	Unmodified	_LLAKAVQSI_					0	0	0		ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.8020324707031	2	471.80276	941.590967	-0.56468	-0.00026642	-1.2511	-0.00059025	-1.8157	-0.00085667	471.80232455097985	27.956	0.13661	27.956	27.828	27.964	0					5	3	2	0	0	0	0.20551	1	9206	9206		60.972	4.2509	1	78837			24613	2663	16191	16252	24952	24952					0.11783521345330428
LLAKVFITK	9	Unmodified	_LLAKVFITK_					0	0	0		nc|ENSG00000187736|Q9H9Q4-2|NHEJ1;ENSG00000187736|ENST00000356853|NHEJ1	nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.8453369140625	2	516.844428	1031.6743	0.92487	0.00047801	-0.34503	-0.00017833	0.57984	0.00029969	516.8444731332837	32.955	0.1516	32.955	32.885	33.036	0					6	3	2	0	0	0	0.13726	1	12572	12572		70.816	15.312	1	86751			24614	11692	16192	16253	24953	24953					0.1597325779316634
LLAKVKATK	9	Unmodified	_LLAKVKATK_					0	0	0			REV__MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant	REV__MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.5585632324219	3	324.558577	970.653902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.274	1	16.274	15.774	16.774	0								0	0	0	0.29774	1	4618	4618		42.864	0	1		+		24615	16975	16193	16254	24954	24954					0.16740087133371162
LLAKVKATK	9	Unmodified	_LLAKVKATK_					0	0	0			REV__MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant	REV__MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.3339538574219	2	486.334227	970.653902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.059	1	16.059	15.559	16.559	0								0	0	0	0.3428	1	3726	3726		26.693	0	1		+		24616	16975	16193	16254	24955	24955					0.16740087133371162
LLALETPVAG	10	Unmodified	_LLALETPVAG_					0	0	0			REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.29278564453125	2	492.292225	982.569897	-0.54921	-0.00027037	0.24364	0.00011994	-0.30557	-0.00015043	492.2923557434311	43.826	0.21548	43.826	43.708	43.923	0					25	11	3	0	0	0	0.42631	1	16472	16472		53.351	2.016	1	303200	+		24617	15021	16194	16255	24956	24956					0.07791511245795846
LLALGLLAAG	10	Unmodified	_LLALGLLAAG_					0	0	0		ENSG00000196136|ENST00000393078|SERPINA3;nc|ENSG00000196136|P01011-2|SERPINA3;nc|ENSG00000196136|P01011-3|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.3004150390625	2	456.299853	910.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.674	1	35.674	35.174	36.174	0								0	0	0	0.34018	1	12071	12071		44.531	0	1				24618	7326	16195	16256	24957	24957					0.12628422833643071
LLALGTFAAA	10	Unmodified	_LLALGTFAAA_					0	0	0			REV__ENSG00000040608|ENST00000043402|RTN4R	REV__ENSG00000040608|ENST00000043402|RTN4R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2801208496094	2	474.28166	946.548768	0.28316	0.0001343	1.2407	0.00058843	1.5238	0.00072273	474.2819642525788	41.478	0.31862	41.478	41.289	41.608	0					23	15	2	0	0	0	0.61887	1	15717	15717		31.955	2.8053	1	99808	+		24619	12997	16196	16257	24958	24958					0.07335545936939525
LLALKQEK	8	Unmodified	_LLALKQEK_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.8021545410156	2	471.80276	941.590967	0.19415	9.1601E-05	-0.93158	-0.00043952	-0.73742	-0.00034792	471.80220317765975	28.126	0.17819	28.126	28.043	28.221	0					10	4	3	0	0	0	0.63077	1	9915	9915		44.117	1.7207	1	477630	+		24620	13072	16197	16258	24959	24959					0.11783521345330428
LLALLAGGAL	10	Unmodified	_LLALLAGGAL_					0	0	0			REV__ENST00000526749.1_1_8:145735004-145735891:+|nuORF	REV__ENST00000526749.1_1_8:145735004-145735891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.29937744140625	2	456.299853	910.585153	0.23817	0.00010868	0.11693	5.3355E-05	0.3551	0.00016203	456.29988786003236	35.947	0.16867	35.947	35.839	36.008	0					8	4	2	0	0	0	0.3122	1	13500	13500		65.897	11.133	1	112430	+		24621	16207	16198	16259	24960	24960					0.1262842283365444
LLANRTSTE	9	Unmodified	_LLANRTSTE_					0	0	0			REV__tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	REV__tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.77392578125	2	502.772188	1003.52982	2.9263	0.0014713	0.73867	0.00037138	3.665	0.0018426	502.7727133335775	34.994	0.61416	34.994	34.75	35.364	0					23	12	2	0	0	0	0.25109	1	13459	13459		55.504	14.726	1	3530200	+		24622	22149	16199	16260	24961	24961					0.0281996457523519
LLAQGQER	8	Unmodified	_LLAQGQER_					0	0	0		ENST00000318782.8_1_16:3022603-3022840:+|nuORF	ENST00000318782.8_1_16:3022603-3022840:+|nuORF	ENST00000318782.8_1_16:3022603-3022840:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7561340332031	2	457.756341	913.498129	-0.64789	-0.00029658	-0.17336	-7.9355E-05	-0.82125	-0.00037593	457.75628475535694	30.849	0.22706	30.849	30.708	30.935	0					7	5	2	0	0	0	0.6282	1	11564	11564		44.531	2.0566	1	124560			24623	8600	16200	16261	24962	24962					0.03792016611942017
LLAQKVRPRRW	11	Unmodified	_LLAQKVRPRRW_					0	0	0		ENSG00000279804|ENST00000624297|PRAMEF18;ENSG00000204480|ENST00000376101|PRAMEF19;ENSG00000116726|ENST00000357726|PRAMEF12	ENSG00000279804|ENST00000624297|PRAMEF18;ENSG00000116726|ENST00000357726|PRAMEF12	ENSG00000116726|ENST00000357726|PRAMEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2985534667969	3	474.965	1421.87317	-0.44685	-0.00021224	-1.0161	-0.00048261	-1.463	-0.00069485	474.9644425640848	24.67	0.18355	24.67	24.602	24.786	0					11	4	4	0	0	0	0.84089	1	8336	8336		6.3209	0.31984	1	465680			24624	8129;2997	16201	16262	24963	24963					0.17910911144576858
LLAQVEQEGPL	11	Unmodified	_LLAQVEQEGPL_					0	0	0		ENST00000416600.6_1_20:3846990-3847266:+|nuORF	ENST00000416600.6_1_20:3846990-3847266:+|nuORF	ENST00000416600.6_1_20:3846990-3847266:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.5567626953125	3	399.555561	1195.64485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.669	1	12.669	12.169	13.169	0								0	0	0	0.45674	1	2908	2908		24.232	0.70912	1				24625	9362	16202	16263	24964	24964					0.0548564898638233
LLASEDRR	8	Unmodified	_LLASEDRR_					0	0	0		CDH1|p.P126Rfs*89|3|0.3|ENSG00000039068|chr16:68801878-68801878|C/-|frameshift_variant	CDH1|p.P126Rfs*89|3|0.3|ENSG00000039068|chr16:68801878-68801878|C/-|frameshift_variant	CDH1|p.P126Rfs*89|3|0.3|ENSG00000039068|chr16:68801878-68801878|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2674255371094	2	480.267073	958.519593	0.031573	1.5163E-05	0.45523	0.00021863	0.48681	0.0002338	480.2672239179681	22.66	0.13607	22.66	22.594	22.73	0					7	4	2	0	0	0	0.75243	1	6438	6438		26.796	1.222	1	148110			24626	444	16203	16264	24965	24965					0.03867401640661683
LLATFLAP	8	Unmodified	_LLATFLAP_					0	0	0			REV__nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1	REV__nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2585754394531	2	423.260197	844.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.075	1	22.075	21.575	22.575	0								0	0	0	1.7419	1	7114	7114		77.944	9.157	1		+		24627	21073	16204	16265	24966	24966					0.07736775879504876
LLATGVGSK	9	Unmodified	_LLATGVGSK_					0	0	0			REV__ENST00000464368.1_1_3:195789435-195792419:-|nuORF	REV__ENST00000464368.1_1_3:195789435-195792419:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.25799560546875	2	423.258185	844.501818	-0.24237	-0.00010258	-0.20542	-8.6948E-05	-0.44779	-0.00018953	423.25799917598204	21.931	0.21208	21.931	21.825	22.037	0					6	4	2	0	0	0	0.087861	1	7362	7362		82.241	0	1	576200	+		24628	13194	16205	16266	24967	24967					0.07334686385809164
LLATSSSRYQ	10	Unmodified	_LLATSSSRYQ_					0	0	0		PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000527370.5_1_11:67264693-67266053:-|nuORF	PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant	PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.298828125	2	563.29857	1124.58259	0.093552	5.2698E-05	0.39556	0.00022282	0.48912	0.00027552	563.2986939094552	14.488	0.14478	14.488	14.437	14.582	0					7	3	3	0	0	0	0.54197	1	3776	3776		40.778	6.8565	1	411710			24629	2634	16206	16267	24968	24968					0.025279226380462205
LLAVIEEQHK	10	Unmodified	_LLAVIEEQHK_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENST00000539643.1_1_17:79219996-79220904:-|nuORF	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.3400268554688	2	590.340238	1178.66592	-0.11417	-6.7396E-05	0.29326	0.00017312	0.1791	0.00010573	590.3404029751083	21.199	0.61153	21.199	20.947	21.558	0					34	12	4	0	0	0	0.56931	1	6935	6935		37.812	2.6595	1	1125800			24630	5226	16207	16268	24969	24969					0.08373659085896179
LLAWVIVF	8	Unmodified	_LLAWVIVF_					0	0	0		SLC6A7|p.F324Lfs*76|1|0.37|ENSG00000011083|chr5:150202585-150202586|-/C|frameshift_variant;ENSG00000011083|ENST00000230671|SLC6A7	SLC6A7|p.F324Lfs*76|1|0.37|ENSG00000011083|chr5:150202585-150202586|-/C|frameshift_variant	SLC6A7|p.F324Lfs*76|1|0.37|ENSG00000011083|chr5:150202585-150202586|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7999572753906	2	480.799489	959.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.594	1	53.594	53.094	54.094	0								0	0	0	1.7419	1	16335	16335		24.504	0	1				24631	1044	16208	16269	24970	24970					0.1030162818460667
LLCGVVDFAR	10	Unmodified	_LLCGVVDFAR_					0	0	0		nc|ENSG00000154639|P78310-7|CXADR;nc|ENSG00000154639|P78310-2|CXADR;nc|ENSG00000154639|P78310-6|CXADR;ENSG00000154639|ENST00000284878|CXADR;nc|ENSG00000154639|P78310-3|CXADR;nc|ENSG00000154639|P78310-4|CXADR;CXADR|p.N201Mfs*27|1|0.28|ENSG00000154639|chr21:17560727-17560727|A/-|frameshift_variant;nc|ENSG00000154639|P78310-5|CXADR	nc|ENSG00000154639|P78310-7|CXADR	nc|ENSG00000154639|P78310-7|CXADR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.86590576171875	3	364.867193	1091.57975	-2.0654	-0.00075358	-1.2489	-0.00045567	-3.3142	-0.0012093	364.8668074839185	32.87	0.21231	32.87	32.789	33.002	0					10	5	3	0	0	0	0.61887	1	11473	11473		36.447	4.9169	1	145890			24632	5093	16209	16270	24971	24971					0.03762375979522403
LLCLKISDKQT	11	Unmodified	_LLCLKISDKQT_					0	0	0		TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.242919921875	3	421.244329	1260.71116	-2.5489	-0.0010737	-0.35527	-0.00014966	-2.9042	-0.0012234	421.24414315872895	16.309	1.045	16.309	16.182	17.227	0					47	30	3	0	0	0	0.63135	1	3808	3808		29.551	0	1	617150			24633	4726	16210	16271	24972	24972					0.09123141556756309
LLCLPCEIF	9	Unmodified	_LLCLPCEIF_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7717895507812	2	525.771757	1049.52896	0.97669	0.00051351	0.31547	0.00016587	1.2922	0.00067938	525.7718409767265	33.037	0.66132	33.037	32.885	33.546	0					27	15	3	0	0	0	0.18879	1	12616	12616		62.978	5.1671	1	225580	+		24634	20925	16211	16272	24973	24973					0.006177106102995822
LLCPLLGGTN	10	Unmodified	_LLCPLLGGTN_					0	0	0			REV__ENST00000532708.5_1_6:111913285-111922470:-|nuORF	REV__ENST00000532708.5_1_6:111913285-111922470:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7799987792969	2	500.778428	999.542302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.65	1	20.65	20.15	21.15	0								0	0	0	0.39525	1	5846	5846		31.955	4.0726	1		+		24635	20075	16212	16273	24974	24974					0.04251284713916448
LLCPQRTPA	9	Unmodified	_LLCPQRTPA_					0	0	0		ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7763671875	2	499.776219	997.537886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.605	1	24.605	24.105	25.105	0								0	0	0	0.3368	1	8304	8304		27.882	1.1893	1				24636	8351	16213	16274	24975	24975					0.039018202910028776
LLDDDSVR	8	Unmodified	_LLDDDSVR_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7371520996094	2	466.737814	931.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.525	1	44.525	44.025	45.025	0								0	0	0	1.7419	1	17327	17327		45.952	1.8352	1		+		24637	12838	16214	16275	24976	24976					-0.007396997244654813
LLDDGHKK	8	Unmodified	_LLDDGHKK_					0	0	0		nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;SLC12A6|p.Q184Kfs*19|1|0.62|ENSG00000140199|chr15:34257782-34257782|G/-|frameshift_variant;SLC12A6|p.L206Yfs*28|2|0.35|ENSG00000140199|chr15:34257715-34257715|A/-|frameshift_variant;SLC12A6|p.L206Ffs*39|1|0.13|ENSG00000140199|chr15:34257714-34257715|-/A|frameshift_variant;SLC12A6|p.Y294Lfs*14|1|0.12|ENSG00000140199|chr15:34254585-34254586|-/GTGAACA|frameshift_variant;SLC12A6|p.S383Nfs*9|1|0.06|ENSG00000140199|chr15:34252357-34252358|-/TACTTTGTTC|frameshift_variant	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	nc|ENSG00000140199|Q9UHW9-5|SLC12A6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.25836181640625	2	463.258717	924.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.051	1	18.051	17.551	18.551	0								0	0	0	1.7419	1	4432	4432		19.36	1.0356	1				24638	4369	16215	16276	24977	24977					0.03760900754718932
LLDFGLGTAAL	11	Unmodified	_LLDFGLGTAAL_					0	0	0			REV__MAP3K9|p.S907Rfs*21|1|0.24|ENSG00000006432|chr14:70732651-70732651|G/-|frameshift_variant	REV__MAP3K9|p.S907Rfs*21|1|0.24|ENSG00000006432|chr14:70732651-70732651|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.20941162109375	3	364.209613	1089.60701	0.47674	0.00017363	-0.79259	-0.00028867	-0.31585	-0.00011503	364.2093028382257	31.25	0.29521	31.25	31.157	31.452	0					17	7	3	0	0	0	0.66915	1	11362	11362		30.569	2.4874	1	743530	+		24639	12851	16216	16277	24978	24978					0.06579182791574567
LLDGRDAP	8	Unmodified	_LLDGRDAP_					0	0	0		ENST00000318967.6_2_1:153746890-153747085:+|nuORF	ENST00000318967.6_2_1:153746890-153747085:+|nuORF	ENST00000318967.6_2_1:153746890-153747085:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7299499511719	2	428.729792	855.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.585	1	21.585	21.085	22.085	0								0	0	0	1.7419	1	6284	6284		63.306	0	1				24640	8603	16217	16278	24979	24979					0.011526388292736556
LLDHQRGH	8	Unmodified	_LLDHQRGH_					0	0	0		ZNF45|p.K442Nfs*98|2|0.28|ENSG00000124459|chr19:43914110-43914110|T/-|frameshift_variant;ENSG00000124459|ENST00000269973|ZNF45	ZNF45|p.K442Nfs*98|2|0.28|ENSG00000124459|chr19:43914110-43914110|T/-|frameshift_variant	ZNF45|p.K442Nfs*98|2|0.28|ENSG00000124459|chr19:43914110-43914110|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2624206542969	2	488.259582	974.504612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.551	1	11.551	11.051	12.051	0								0	0	0	1.7419	1	2261	2261		19.36	1.0356	1				24641	3374	16218	16279	24980	24980					0.016339545633286434
LLDKWVRH	8	Unmodified	_LLDKWVRH_					0	0	0			REV__ENSG00000110871|ENST00000288532|COQ5	REV__ENSG00000110871|ENST00000288532|COQ5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.8125610351562	2	533.811451	1065.60835	0.47535	0.00025375	1.2335	0.00065844	1.7088	0.00091219	533.8123166156423	30.558	0.15762	30.558	30.494	30.652	0					9	6	2	0	0	0	0.74405	1	9761	9761		27.882	0	1	58993	+		24642	13949	16219	16280	24981	24981					0.07816861670971775
LLDLNPQSI	9	Unmodified	_LLDLNPQSI_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.1932678222656	3	338.193963	1011.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.176	1	45.176	44.676	45.676	0								0	0	0	0.37821	1	15415	15415		12.812	1.7149	1				24643	1994	16220	16281	24982	24982					0.05474323240423473
LLDTGTAVR	9	Unmodified	_LLDTGTAVR_					0	0	0			REV__ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant	REV__ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.271728515625	2	473.271824	944.529095	0.65126	0.00030822	-1.259	-0.00059585	-0.60773	-0.00028762	473.2712974961831	15.888	0.16719	15.888	15.78	15.947	0					5	3	2	0	0	0	0.45358	1	4300	4300		37.159	1.5408	1	447750	+		24644	12142	16221	16282	24983	24983					0.05461169926184084
LLDTGTTPV	9	Unmodified	_LLDTGTTPV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;BTAF1|p.Q569Sfs*23|1|0.36|ENSG00000095564|chr10:91980503-91980503|T/-|frameshift_variant	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7525634765625	2	458.752933	915.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.638	1	30.638	30.138	31.138	0								0	0	0	0.20652	1	11473	11473		50.025	2.1089	1				24645	1904	16222	16283	24984	24984					0.03018658940709429
LLDVARTSL	9	Unmodified	_LLDVARTSL_					0	0	0		nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;CCT6B|p.I274*|1|0.1|ENSG00000132141|chr17:34942549-34942549|T/-|frameshift_variant	nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-2|CCT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2949523925781	2	494.295299	986.576045	0.89696	0.00044337	-1.4298	-0.00070676	-0.53286	-0.00026339	494.294796357501	37.556	0.1598	37.556	37.45	37.61	0					5	3	2	0	0	0	0.18416	1	14708	14708		63.534	0	1	76837			24646	3762	16223	16284	24985	24985					0.08222029477337855
LLEARSFS	8	Unmodified	_LLEARSFS_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.7532653808594	2	461.753267	921.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.678	1	32.678	32.178	33.178	0								0	0	0	1.7419	1	12020	12020		76.774	2.5191	1		+		24647	13759	16224	16285	24986	24986					0.028094983804294316
LLEARSFS	8	Unmodified	_LLEARSFS_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.75299072265625	2	461.753267	921.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.645	1	32.645	32.145	33.145	0								0	0	0	1.7419	1	12425	12425		74.255	7.8258	1		+		24648	13759	16224	16285	24987	24987					0.028094983804294316
LLEASRLYQ	9	Unmodified	_LLEASRLYQ_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.8078002929688	2	546.806031	1091.59751	1.1345	0.00062033	-0.37145	-0.00020311	0.76301	0.00041722	546.8059186711753	25.034	0.36243	25.034	24.86	25.222	0					17	8	3	0	0	0	0.42902	1	7856	7856		39.253	1.4413	1	538610			24649	7845	16225	16286	24988	24988					0.05537414506011373
LLEAYIEAR	9	Unmodified	_LLEAYIEAR_					0	0	0		PCDHAC1|p.E339Nfs*5|1|0.36|ENSG00000248383|chr5:140927902-140927902|C/-|frameshift_variant;nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1	PCDHAC1|p.E339Nfs*5|1|0.36|ENSG00000248383|chr5:140927902-140927902|C/-|frameshift_variant	PCDHAC1|p.E339Nfs*5|1|0.36|ENSG00000248383|chr5:140927902-140927902|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.3088989257812	2	539.300581	1076.58661	3.4294	0.0018495	-2.5991	-0.0014017	0.83029	0.00044778	539.2980974533496	34.735	1.0111	34.735	34.506	35.518	0					45	20	4	0	0	0	0.35021	1	13296	13296		45.972	0	1	3073500			24650	7976	16226	16287	24989	24989					0.051380121317379235
LLEEHQLN	8	Unmodified	_LLEEHQLN_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.26129150390625	2	498.261456	994.50836	-0.72967	-0.00036357	0.75409	0.00037573	0.024418	1.2167E-05	498.261746520089	32.139	0.36931	32.139	31.969	32.338	0					24	7	4	0	0	0	0.30437	1	12092	12092		82.305	2.854	1	602800	+		24651	16774	16227	16288	24990	24990					0.010885795465242154
LLEFTHMY	8	Unmodified	_LLEFTHMY_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2566528320312	2	527.257328	1052.5001	0.64991	0.00034267	-0.96547	-0.00050905	-0.31557	-0.00016639	527.2565103991286	35.096	0.61437	35.096	34.784	35.398	0					19	12	2	0	0	0	0.68754	1	13528	13528		35.201	0.04869	1	86607			24652	4466	16228	16289	24991	24991					-0.02404690694470446
LLELLDTR	8	Unmodified	_LLELLDTR_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7898254394531	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.372	1	29.372	28.872	29.872	0								0	0	0	1.7419	1	10869	10869		23.042	0	1				24653	6458	16229	16290	24992	24992					0.078226271030303
LLEMNEKLP	9	Unmodified	_LLEMNEKLP_					0	0	0		nc|ENSG00000206530|Q96MT7-1|CFAP44;ENSG00000206530|ENST00000393845|CFAP44	nc|ENSG00000206530|Q96MT7-1|CFAP44	nc|ENSG00000206530|Q96MT7-1|CFAP44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.7994995117188	2	543.796817	1085.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.348	1	18.348	17.848	18.848	0								0	0	0	0.34101	1	4551	4551		34.173	7.4796	1				24654	7769	16230	16291	24993	24993					0.03971536539825138
LLEMRDKES	9	Unmodified	_LLEMRDKES_					0	0	0			REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.7864990234375	2	560.786981	1119.55941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.955	1	27.955	27.455	28.455	0								0	0	0	0.3119	1	8963	8963		32.812	0	1		+		24655	14203	16231	16292	24994	24994					0.004411605290897569
LLEQELHLL	9	Unmodified	_LLEQELHLL_					0	0	0			REV__ENST00000356136.7_2_11:75854004-75854214:+|nuORF	REV__ENST00000356136.7_2_11:75854004-75854214:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	369.88507080078125	3	369.88513	1106.63356	0.067582	2.4998E-05	-0.2003	-7.4088E-05	-0.13272	-4.909E-05	369.8849921041581	23	0.59549	23	22.907	23.502	0					48	18	5	0	0	0	0.21263	1	6595	6595		60.118	3.3972	1	8571700	+		24656	18516	16232	16293	24995	24995					0.08450871682907746
LLEQELHLL	9	Unmodified	_LLEQELHLL_					0	0	0			REV__ENST00000356136.7_2_11:75854004-75854214:+|nuORF	REV__ENST00000356136.7_2_11:75854004-75854214:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.88531494140625	3	369.88513	1106.63356	1.0106	0.00037381	-1.3377	-0.00049481	-0.32714	-0.00012101	369.8846876332354	23.255	3.7333	23.255	23.044	26.778	0					162	73	5	0	0	0	0.12239	1	7971	7971		74.255	14.137	1	76888000	+		24657	18516	16232	16293	24996	24996					0.08450871682907746
LLEQVTIFL	9	Unmodified	_LLEQVTIFL_					0	0	0		ENST00000483443.1_1_2:238664770-238678725:+|nuORF	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3233032226562	2	538.323525	1074.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.468	1	16.468	15.968	16.968	0								0	0	0	0.39802	1	4713	4713		11.511	0	1				24658	9980	16233	16294	24997	24997					0.09816657313990618
LLERTMAPN	9	Oxidation (M)	_LLERTM(Oxidation (M))APN_		LLERTM(1)APN		LLERTM(55)APN	0	0	1			REV__ENSG00000102401|ENST00000471229|ARMCX3	REV__ENSG00000102401|ENST00000471229|ARMCX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7747192382812	2	530.776416	1059.53828	-1.2193	-0.00064718	-1.5189	-0.00080621	-2.7382	-0.0014534	530.7754975017322	22.82	0.26957	22.82	22.723	22.992	0					9	6	2	0	0	0	0.25716	1	6869	6869		54.776	25.606	1	221510	+		24659	13635	16234	16295	24998	24998		520			0.010891952201973254
LLESLPLGQRQ	11	Unmodified	_LLESLPLGQRQ_					0	0	0		nc|ENSG00000041515|Q9Y6X6-2|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.F842Sfs*17|6|0.36|ENSG00000041515|chr13:109009038-109009038|T/-|frameshift_variant;MYO16|p.K869Nfs*6|1|0.29|ENSG00000041515|chr13:109019782-109019782|A/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-2|MYO16	nc|ENSG00000041515|Q9Y6X6-2|MYO16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	418.57843017578125	3	418.578588	1252.71394	0.039907	1.6704E-05	-0.13781	-5.7682E-05	-0.097899	-4.0978E-05	418.5784836281225	23.57	0.26632	23.57	23.513	23.779	0					10	5	3	0	0	0	0.66915	1	8175	8175		30.569	2.9249	1	170750			24660	1194	16235	16296	24999	24999					0.09768733005944341
LLEWPVAQG	9	Unmodified	_LLEWPVAQG_					0	0	0		ENST00000595369.1_1_19:6759548-6763810:-|nuORF	ENST00000595369.1_1_19:6759548-6763810:-|nuORF	ENST00000595369.1_1_19:6759548-6763810:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.7761535644531	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.81	1	35.81	35.31	36.31	0								0	0	0	0.3368	1	12118	12118		27.882	1.1893	1				24661	10997	16236	16297	25000	25000					0.03362357931564475
LLEYHIAYL	9	Unmodified	_LLEYHIAYL_					0	0	0		nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENST00000476672.1_1_3:180675662-180688154:+|nuORF	nc|ENSG00000114416|P51114-3|FXR1	nc|ENSG00000114416|P51114-3|FXR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.8109741210938	2	567.813325	1133.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.55	1	39.55	39.05	40.05	0								0	0	0	0.33492	1	15560	15560		28.254	5.2118	1				24662	2847	16237	16298	25001	25001					0.050634866541713563
LLFCFVAR	8	Unmodified	_LLFCFVAR_					0	0	0			REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF	REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7615051269531	2	484.772948	967.531344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.901	1	15.901	15.401	16.401	0								0	0	0	1.7419	1	4295	4295		29.842	0.69198	1		+		24663	20626	16238	16299	25002	25002					0.046279271302978486
LLFPTPALCQ	10	Unmodified	_LLFPTPALCQ_					0	0	0		ENST00000551245.5_1_12:49724607-49724727:+|nuORF	ENST00000551245.5_1_12:49724607-49724727:+|nuORF	ENST00000551245.5_1_12:49724607-49724727:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.2046813964844	3	368.203694	1101.58925	0.48037	0.00017687	1.8756	0.00069061	2.356	0.00086748	368.20443258951565	17.034	0.13353	17.034	16.986	17.12	0					6	4	2	0	0	0	0.70877	1	3999	3999		14.694	0	1	42870			24664	10624	16239	16300	25003	25003					0.04252144265046809
LLFVVSRVAG	10	Unmodified	_LLFVVSRVAG_					0	0	0			REV__ENST00000368845.5_1_10:126100696-126107461:-|nuORF	REV__ENST00000368845.5_1_10:126100696-126107461:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.2204895019531	3	354.221965	1059.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.026	1	14.026	13.526	14.526	0								0	0	0	0.24873	1	2905	2905		58.23	1.5977	1		+		24665	18616	16240	16301	25004	25004					0.11662899127986748
LLFWATFT	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LLFWATFT_					1	0	0		ENST00000339594.8_1_7:72891859-72891937:-|nuORF	ENST00000339594.8_1_7:72891859-72891937:-|nuORF	ENST00000339594.8_1_7:72891859-72891937:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7784423828125	2	520.776211	1039.53787	3.3784	0.0017594	0.57169	0.00029772	3.9501	0.0020571	520.776502135493	14.035	0.4613	14.035	13.88	14.341	0					22	9	4	0	0	0	0.29779	1	3409	3409		83.287	17.484	1	1426000			24666	8723	16241	16302	25005	25005					0.019681435626580424
LLFYDLFLM	9	Unmodified	_LLFYDLFLM_					0	0	0		ENST00000419819.2_3_7:80275924-80276026:+|nuORF	ENST00000419819.2_3_7:80275924-80276026:+|nuORF	ENST00000419819.2_3_7:80275924-80276026:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.2120361328125	3	392.212078	1173.6144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.848	1	23.848	23.348	24.348	0								0	0	0	0.30504	1	7221	7221		34.173	2.5383	1				24667	9388	16242	16303	25006	25006					0.034541990676189016
LLFYSALL	8	Unmodified	_LLFYSALL_					0	0	0			REV__ENST00000564574.5_2_16:28493646-28503072:-|nuORF	REV__ENST00000564574.5_2_16:28493646-28503072:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.284423828125	2	470.281129	938.547705	-0.12542	-5.8984E-05	-3.0056	-0.0014135	-3.1311	-0.0014725	470.2798431815667	25.511	0.364	25.511	25.205	25.569	0					13	7	3	0	0	0	0.79176	1	8960	8960		21.702	0	1	704360	+		24668	17176	16243	16304	25007	25007					0.0759733156803577
LLGAAAWVA	9	Unmodified	_LLGAAAWVA_					0	0	0			REV__ENSG00000180929|ENST00000322241|GPR62	REV__ENSG00000180929|ENST00000322241|GPR62	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.25360107421875	2	436.255446	870.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.874	1	31.874	31.374	32.374	0								0	0	0	0.21213	1	10596	10596		49.211	10.189	1		+		24669	16829	16244	16305	25008	25008					0.055910075939777926
LLGGAGAGLLL	11	Unmodified	_LLGGAGAGLLL_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.80242919921875	2	477.80276	953.590967	-1.4761	-0.00070526	1.1503	0.00054961	-0.32577	-0.00015566	477.8031193433094	37.476	0.18932	37.476	37.34	37.529	0					17	10	2	0	0	0	0.42078	1	12648	12648		50.025	12.865	1	89660	+		24670	15876	16245	16306	25009	25009					0.11231521345348483
LLGGAGAGLLL	11	Unmodified	_LLGGAGAGLLL_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.8026428222656	2	477.80276	953.590967	0.84526	0.00040387	-1.1973	-0.00057206	-0.35201	-0.00016819	477.80205604105225	37.595	0.30349	37.595	37.45	37.754	0					16	6	4	0	0	0	0.42078	1	14687	14687		50.025	2.3672	1	898450	+		24671	15876	16245	16306	25010	25010					0.11231521345348483
LLGGRLLGQSA	11	Unmodified	_LLGGRLLGQSA_					0	0	0		nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1;ENSG00000182871|ENST00000651438|COL18A1;ENST00000473212.1_1_21:46927018-46932309:+|nuORF	nc|ENSG00000182871|P39060-1|COL18A1	nc|ENSG00000182871|P39060-1|COL18A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.221923828125	3	362.220624	1083.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.21	1	50.21	49.71	50.71	0								0	0	0	0.44116	1	18115	18115		18.531	0.69791	1				24672	11671	16246	16307	25011	25011					0.10156809634281672
LLGHHVGP	8	Unmodified	_LLGHHVGP_					0	0	0		ENST00000366971.8_1_1:213032234-213037122:+|nuORF	ENST00000366971.8_1_1:213032234-213037122:+|nuORF	ENST00000366971.8_1_1:213032234-213037122:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.2386169433594	2	415.237587	828.460622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.961	1	29.961	29.461	30.461	0								0	0	0	1.7419	1	10143	10143		33.493	8.989	1				24673	8903	16247	16308	25012	25012					0.03952970137004286
LLGIRDMAQ	9	Unmodified	_LLGIRDMAQ_					0	0	0			REV__ENSG00000047578|ENST00000261588|KATNIP	REV__ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.5238342285156	3	339.523427	1015.54845	-0.70476	-0.00023928	0.76953	0.00026127	0.064775	2.1993E-05	339.5238982442985	14.549	0.051399	14.549	14.51	14.561	0					4	2	2	0	0	0	0.5879	1	3168	3168		23.523	1.8369	1	47689	+		24674	13011	16248	16309	25013	25013					0.04129802945442407
LLGLKRGVYM	10	Unmodified	_LLGLKRGVYM_					0	0	0			REV__ENST00000589644.1_1_19:38799650-38799980:-|nuORF	REV__ENST00000589644.1_1_19:38799650-38799980:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.3460083007812	2	575.344269	1148.67399	0.14053	8.0853E-05	2.2619	0.0013014	2.4024	0.0013822	575.3455403456603	55.037	0.13303	55.037	54.999	55.132	0					10	8	2	0	0	0	0.68218	1	19126	19126		24.203	4.8428	1	44923	+		24675	16201	16249	16310	25014	25014					0.105595148016846
LLGLTRSQN	9	Unmodified	_LLGLTRSQN_					0	0	0			REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF	REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2901916503906	2	501.290548	1000.56654	1.1212	0.00056206	-0.65814	-0.00032992	0.4631	0.00023215	501.2901843484689	48.265	0.69288	48.265	47.848	48.541	0					84	36	3	0	0	0	0.50858	1	19227	19227		17.365	1.7232	1	227460	+		24676	20294	16250	16311	25015	25015					0.06628261191804086
LLGLYFLSH	9	Unmodified	_LLGLYFLSH_					0	0	0		ENST00000582384.1_1_17:26646301-26653610:+|nuORF;ENSG00000109084|ENST00000226230|TMEM97	ENST00000582384.1_1_17:26646301-26653610:+|nuORF	ENST00000582384.1_1_17:26646301-26653610:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.801025390625	2	531.80276	1061.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.599	1	17.599	17.099	18.099	0								0	0	0	0.25856	1	4227	4227		42.474	3.6683	1				24677	2565	16251	16312	25016	25016					0.06263521345317713
LLGPGACS	8	Unmodified	_LLGPGACS_					0	0	0		PRSS53|p.R442G|1|0.35|ENSG00000151006|chr16:31084659-31084659|T/C|missense_variant	PRSS53|p.R442G|1|0.35|ENSG00000151006|chr16:31084659-31084659|T/C|missense_variant	PRSS53|p.R442G|1|0.35|ENSG00000151006|chr16:31084659-31084659|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.18292236328125	2	359.183632	716.352711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.149	1	47.149	46.649	47.649	0								0	0	0	1.7419	1	18840	18840		23.037	0	1				24678	11980	16252	16313	25017	25017					-0.016811625086006643
LLGPTRNLRR	10	Unmodified	_LLGPTRNLRR_					0	0	0			REV__ENST00000479440.1_1_7:44613191-44613521:-|nuORF	REV__ENST00000479440.1_1_7:44613191-44613521:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.2503662109375	3	399.250918	1194.73092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.511	1	10.511	10.011	11.011	0								0	0	0	0.4201	1	2015	2015		7.8045	0	1		+		24679	19574	16253	16314	25018	25018					0.14134698402381218
LLGRVYNIY	9	Unmodified	_LLGRVYNIY_					0	0	0		ENST00000394361.8_1_16:57596005-57608989:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.819091796875	2	555.818941	1109.62333	-0.093673	-5.2065E-05	1.6115	0.0008957	1.5178	0.00084363	555.819272156803	38.703	0.17842	38.703	38.638	38.817	0					8	6	2	0	0	0	0.12239	1	15187	15187		68.485	18.46	1	147140			24680	9174	16254	16315	25019	25019					0.0729030874831551
LLGSTLKNFL	10	Unmodified	_LLGSTLKNFL_					0	0	0		ENST00000265339.6_1_5:133726790-133726904:+|nuORF	ENST00000265339.6_1_5:133726790-133726904:+|nuORF	ENST00000265339.6_1_5:133726790-133726904:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.2251892089844	3	369.225375	1104.6543	0.46808	0.00017283	-0.67866	-0.00025058	-0.21058	-7.7751E-05	369.2250595970498	29.77	0.49858	29.77	29.512	30.011	0					16	12	3	0	0	0	0.68218	1	10654	10654		22.58	0	1	513490			24681	8348	16255	16316	25020	25020					0.10615462062582992
LLGTAAAKIL	10	Unmodified	_LLGTAAAKIL_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.8180847167969	2	485.81841	969.622267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.72	1	21.72	21.22	22.22	0								0	0	0	0.4201	1	6281	6281		20.947	1.587	1				24682	2625	16256	16317	25021	25021					0.13624094379429152
LLGTAALAPGA	11	Unmodified	_LLGTAALAPGA_					0	0	0		nc|ENSG00000157168|Q02297-9|NRG1	nc|ENSG00000157168|Q02297-9|NRG1	nc|ENSG00000157168|Q02297-9|NRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7843017578125	2	477.784567	953.554582	-0.076838	-3.6712E-05	-0.40142	-0.00019179	-0.47826	-0.00022851	477.7843589536998	32.909	0.51365	32.909	32.617	33.131	0					45	21	3	0	0	0	0.52516	1	10731	10731		42.396	3.1433	1	226060			24683	11600	16257	16318	25022	25022					0.07594644448613508
LLGTDNLTY	9	Unmodified	_LLGTDNLTY_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.26385498046875	2	505.263665	1008.51278	0.1187	5.9973E-05	1.1565	0.00058435	1.2752	0.00064432	505.2639912392037	39.421	0.21553	39.421	39.311	39.527	0					12	7	3	0	0	0	0.26904	1	15494	15494		53.351	0.41475	1	109220	+		24684	17271	16258	16319	25023	25023					0.008860439694217348
LLGTDNLTY	9	Unmodified	_LLGTDNLTY_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.765869140625	2	505.263665	1008.51278	-0.31852	-0.00016094	1.8592	0.00093937	1.5406	0.00077843	505.264552171332	39.381	0.19946	39.381	39.301	39.5	0					8	4	2	0	0	0	0.12239	1	15557	15557		74.255	2.3776	1	220040	+		24685	17271	16258	16319	25024	25024					0.008860439694217348
LLGTLEQPL	9	Unmodified	_LLGTLEQPL_					0	0	0		ENST00000563678.1_1_16:31716740-31717107:+|nuORF	ENST00000563678.1_1_16:31716740-31717107:+|nuORF	ENST00000563678.1_1_16:31716740-31717107:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.29254150390625	2	492.292225	982.569897	2.7301	0.001344	-0.73547	-0.00036206	1.9946	0.00098193	492.29182112628763	35.253	0.31813	35.253	35.097	35.415	0					17	6	4	0	0	0	0.071197	1	13583	13583		87.754	14.875	1	1393200			24686	10735	16259	16320	25025	25025					0.07791511245807214
LLGTLLFKL	9	Unmodified	_LLGTLLFKL_					0	0	0			REV__ENST00000497136.6_1_10:122626245-122665534:+|nuORF	REV__ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.3381652832031	2	509.338978	1016.6634	1.3435	0.00068428	-0.62078	-0.00031619	0.72269	0.00036809	509.33871460917015	49.615	0.28233	49.615	49.483	49.766	0					26	13	3	0	0	0	0.2873	1	19591	19591		51.335	0	1	258550	+		24687	14265	16260	16321	25026	25026					0.1557385541889289
LLGTSPERV	9	Unmodified	_LLGTSPERV_					0	0	0		ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.78118896484375	2	486.279649	970.544745	-0.28704	-0.00013958	0.97483	0.00047404	0.68779	0.00033446	486.28040444370737	39.748	0.22276	39.748	39.658	39.88	0					14	9	2	0	0	0	0.48389	1	15127	15127		34.173	1.3601	1	91852			24688	3625	16261	16322	25027	25027					0.05829456443234449
LLGVLGSLP	9	Unmodified	_LLGVLGSLP_					0	0	0		ENST00000211379.9_1_6:31619532-31620470:-|nuORF;ENST00000375964.10_1_6:31619532-31620470:-|nuORF	ENST00000211379.9_1_6:31619532-31620470:-|nuORF	ENST00000211379.9_1_6:31619532-31620470:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.77978515625	2	434.778754	867.542954	2.6266	0.001142	0.21473	9.336E-05	2.8413	0.0012354	434.7787471271742	26.63	3.2234	26.63	26.017	29.241	0					110	64	4	0	0	0	0.47428	1	9440	9440		35.201	1.6851	1	2775700			24689	8153	16262	16323	25028	25028					0.10388447425293634
LLGYIWRM	8	Unmodified	_LLGYIWRM_					0	0	0		ENST00000511653.1_2_4:83978119-83978173:+|nuORF	ENST00000511653.1_2_4:83978119-83978173:+|nuORF	ENST00000511653.1_2_4:83978119-83978173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.201171875	3	351.196762	1050.56846	1.4587	0.00051229	0.58903	0.00020686	2.0477	0.00071916	351.19684600457003	19.13	0.26523	19.13	18.98	19.245	0					17	5	4	0	0	0	0.72892	1	5827	5827		24.203	0	1	5507100			24690	10237	16263	16324	25029	25029					0.045195986760745654
LLHAFRIRAV	10	Unmodified	_LLHAFRIRAV_					0	0	0		ENST00000468862.5_1_3:159711454-159713343:+|nuORF;ENSG00000168811|ENST00000699704|IL12A	ENST00000468862.5_1_3:159711454-159713343:+|nuORF	ENST00000468862.5_1_3:159711454-159713343:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.25103759765625	3	399.252258	1194.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.259	1	49.259	48.759	49.759	0								0	0	0	0.4201	1	14903	14903		8.2351	0.43057	1				24691	6125	16264	16325	25030	25030					0.14536787896099668
LLHALFLCL	9	Unmodified	_LLHALFLCL_					0	0	0			REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2;REV__nc|ENSG00000131355|Q9BY15-2|ADGRE3;REV__nc|ENSG00000268758|Q86SQ3|ADGRE4P	REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.8104858398438	2	521.809531	1041.60451	0.37286	0.00019456	1.7679	0.00092248	2.1407	0.001117	522.3119413442388	21.638	0.1438	21.638	21.571	21.715	0					6	4	2	0	0	0	0.60043	1	6252	6252		21.702	2.3424	1	112320	+		24692	14489;14617;21247	16265	16326	25031	25031					0.08537055852889353
LLHGSLVQE	9	Unmodified	_LLHGSLVQE_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant;NBEAL2|p.P1303Lfs*63|1|0.21|ENSG00000160796|chr3:47000002-47000002|C/-|frameshift_variant;NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant;NBEAL2|p.A1138V|1|0.1|ENSG00000160796|chr3:46998987-46998987|C/T|missense_variant	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2801513671875	2	498.279649	994.544745	-0.05473	-2.7271E-05	-0.36018	-0.00017947	-0.41491	-0.00020674	498.2796043551466	12.834	0.08526	12.834	12.764	12.849	0					7	4	2	0	0	0	0.37197	1	2461	2461		44.117	1.7207	1	56176			24693	5386	16266	16327	25032	25032					0.04725456443236453
LLHGTAVLPS	10	Unmodified	_LLHGTAVLPS_					0	0	0			REV__HCRTR2|p.P11Lfs*11|3|0.25|ENSG00000137252|chr6:55174613-55174613|C/-|frameshift_variant	REV__HCRTR2|p.P11Lfs*11|3|0.25|ENSG00000137252|chr6:55174613-55174613|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2984619140625	2	504.297842	1006.58113	0.6404	0.00032295	-0.078578	-3.9627E-05	0.56182	0.00028332	504.29782190172676	23.873	1.0539	23.873	23.298	24.352	0					41	35	2	0	0	0	0.57532	1	7092	7092		37.159	4.3467	1	139510	+		24694	20717	16267	16328	25033	25033					0.0781033333993264
LLHIIIEDN	9	Unmodified	_LLHIIIEDN_					0	0	0		NCAPG|p.D454E|1|0.23|ENSG00000109805|chr4:17823749-17823749|T/G|missense_variant	NCAPG|p.D454E|1|0.23|ENSG00000109805|chr4:17823749-17823749|T/G|missense_variant	NCAPG|p.D454E|1|0.23|ENSG00000109805|chr4:17823749-17823749|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.8095703125	2	540.308406	1078.60226	1.0327	0.00055798	0.68996	0.00037279	1.7227	0.00093078	540.308690057629	34.447	0.33596	34.447	34.32	34.656	0					26	10	4	0	0	0	0.21116	1	12175	12175		60.294	13.837	1	283100			24695	11843	16268	16329	25034	25034					0.06610298648797652
LLHKHLHL	8	Unmodified	_LLHKHLHL_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.8159484863281	2	505.816536	1009.61852	-1.9695	-0.00099621	0.73909	0.00037384	-1.2304	-0.00062237	505.81690393507097	35.493	0.30186	35.493	35.342	35.644	0					18	11	2	0	0	0	0.72892	1	12626	12626		29.842	29.842	1	133610			24696	1917	16269	16330	25035	25035					0.11409469396221539
LLHLIRTA	8	Unmodified	_LLHLIRTA_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1	REV__ENSG00000181789|ENST00000314797|COPG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.8023681640625	2	468.803094	935.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.064	1	14.064	13.564	14.564	0								0	0	0	1.7419	1	3345	3345		13.775	0	1		+		24697	16856	16270	16331	25036	25036					0.12126360785021006
LLHQIIHK	8	Unmodified	_LLHQIIHK_					0	0	0		ZNF573|p.R350I|1|0.18|ENSG00000189144|chr19:37739441-37739441|C/A|missense_variant	ZNF573|p.R350I|1|0.18|ENSG00000189144|chr19:37739441-37739441|C/A|missense_variant	ZNF573|p.R350I|1|0.18|ENSG00000189144|chr19:37739441-37739441|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.31640625	2	501.316369	1000.61818	-0.39907	-0.00020006	-0.57126	-0.00028638	-0.97033	-0.00048644	501.31623180549735	35.796	0.15551	35.796	35.696	35.851	0					9	5	2	0	0	0	0.70055	1	12769	12769		33.516	4.366	1	136150			24698	23165	16271	16332	25037	25037					0.11790049676369563
LLHRCAQGK	9	Unmodified	_LLHRCAQGK_					0	0	0			REV__ST6GALNAC2|p.F297Lfs*15|1|0.29|ENSG00000070731|chr17:76567519-76567519|A/-|frameshift_variant	REV__ST6GALNAC2|p.F297Lfs*15|1|0.29|ENSG00000070731|chr17:76567519-76567519|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2864379882812	2	513.287285	1024.56002	0.013853	7.1108E-06	-1.2159	-0.00062411	-1.2021	-0.000617	513.2866013152051	37.822	0.4316	37.822	37.451	37.882	0					26	13	3	0	0	0	0.41354	1	14332	14332		40.573	5.3719	1	87001	+		24699	13177	16272	16333	25038	25038					0.04872044759417804
LLHRGLPGGR	10	Unmodified	_LLHRGLPGGR_					0	0	0		ENSG00000165816|ENST00000392982|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2	ENSG00000165816|ENST00000392982|VWA2	ENSG00000165816|ENST00000392982|VWA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.32763671875	2	538.327799	1074.64105	0.51662	0.00027811	-0.93151	-0.00050146	-0.41489	-0.00022335	538.3270875771298	56.334	0.29062	56.334	56.23	56.521	0					43	18	3	0	0	0	0.66185	1	20098	20098		26.693	2.4902	1	216410			24700	5832	16273	16334	25039	25039					0.10671068793840277
LLHSPIAPGG	10	Unmodified	_LLHSPIAPGG_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.27618408203125	2	481.276909	960.539266	-2.9236	-0.001407	-0.0036291	-1.7466E-06	-2.9272	-0.0014088	481.27728636799293	28.221	0.22602	28.221	28.057	28.283	0					14	5	3	0	0	0	0.357	1	9312	9312		60.972	13.056	1	142970	+		24701	14612	16274	16335	25040	25040					0.057417776514284924
LLIEVSLR	8	Unmodified	_LLIEVSLR_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.80267333984375	2	471.80276	941.590967	0.59228	0.00027944	-0.73561	-0.00034706	-0.14333	-6.7622E-05	471.80226943790547	28.083	0.21804	28.083	27.993	28.211	0					9	4	3	0	0	0	0.66372	1	10152	10152		38.806	0.99462	1	371800	+		24702	17256	16275	16336	25041	25041					0.11783521345341796
LLIFLEEPP	9	Unmodified	_LLIFLEEPP_					0	0	0		nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692435-96692645:-|nuORF;ENST00000471757.5_1_2:96691131-96693504:-|nuORF;ENST00000486463.5_1_2:96687909-96693504:-|nuORF	nc|ENSG00000186281|Q6NUI2-3|GPAT2	nc|ENSG00000186281|Q6NUI2-3|GPAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.5416564941406	3	357.542593	1069.60595	-2.0258	-0.00072432	-0.41714	-0.00014915	-2.443	-0.00087347	357.5424694091979	15.051	0.066007	15.051	15.007	15.073	0					4	2	2	0	0	0	0.55379	1	3302	3302		26.693	1.1189	1	30841			24703	7129	16276	16337	25042	25042					0.07392968422664126
LLIFVPYIG	9	Unmodified	_LLIFVPYIG_					0	0	0		ENST00000560409.5_1_15:85213252-85222467:-|nuORF	ENST00000560409.5_1_15:85213252-85222467:-|nuORF	ENST00000560409.5_1_15:85213252-85222467:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.8147583007812	2	517.817879	1033.6212	-1.4373	-0.00074426	-2.3227	-0.0012027	-3.7599	-0.001947	517.8167111728886	36.1	0.31265	36.1	36.002	36.315	0					19	11	2	0	0	0	0.43174	1	12912	12912		39.021	0	1	118700			24704	10692	16277	16338	25043	25043					0.10573880010497305
LLISGQSLLA	10	Unmodified	_LLISGQSLLA_					0	0	0			REV__HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant	REV__HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8133850097656	2	507.813325	1013.6121	-0.029338	-1.4898E-05	0.15135	7.6857E-05	0.12201	6.1958E-05	507.81325244013425	40.386	0.27007	40.386	40.325	40.595	0					23	10	3	0	0	0	0.62235	1	15384	15384		31.53	0	1	257250	+		24705	15768	16278	16339	25044	25044					0.1058348665419544
LLIVAPQDPN	10	Unmodified	_LLIVAPQDPN_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.3097534179688	2	540.308406	1078.60226	1.6395	0.00088586	0.7485	0.00040442	2.388	0.0012903	540.3087912575983	34.4	0.2667	34.4	34.305	34.572	0					30	12	3	0	0	0	0.71484	1	11222	11222		19.997	1.7347	1	337080	+		24706	17415	16279	16340	25045	25045					0.0661029864882039
LLKDKDPGA	9	Unmodified	_LLKDKDPGA_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;ENST00000552168.1_1_12:53455573-53455786:+|nuORF	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7742004394531	2	478.7742	955.533846	-0.11595	-5.5515E-05	-0.30088	-0.00014406	-0.41684	-0.00019957	478.7740684597408	21.567	0.21709	21.567	21.475	21.692	0					10	4	3	0	0	0	0.098791	1	7168	7168		79.713	0	1	288900			24707	11480	16280	16341	25046	25046					0.054300540689382615
LLKELYEKDVY	11	Unmodified	_LLKELYEKDVY_					0	0	0			REV__ENST00000585530.1_1_17:40091759-40093269:+|nuORF	REV__ENST00000585530.1_1_17:40091759-40093269:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	706.8883666992188	2	706.887218	1411.75988	1.4098	0.00099654	1.3111	0.00092677	2.7208	0.0019233	706.8882852281416	37.052	1.1228	37.052	36.04	37.163	0					79	58	2	0	0	0	0.68382	1	12518	12518		29.17	3.596	1	114940	+		24708	17501	16281	16342	25047	25047					0.07047333397508737
LLKFFGAA	8	Unmodified	_LLKFFGAA_					0	0	0			REV__ENST00000309415.7_1_2:110260014-110260236:+|nuORF	REV__ENST00000309415.7_1_2:110260014-110260236:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.7613220214844	2	433.760364	865.506175	0.19735	8.5602E-05	2.7645	0.0011991	2.9619	0.0012847	433.7615738249809	31.957	0.1339	31.957	31.894	32.028	0					7	5	2	0	0	0	0.79176	1	10307	10307		21.702	0	1	94498	+		24709	18261	16282	16343	25048	25048					0.06804195599374907
LLKFTPGAVML	11	Unmodified	_LLKFTPGAVML_					0	0	0		nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13;nc|ENSG00000123200|Q5T200-2|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.3543701171875	2	595.354302	1188.69405	1.4009	0.00083401	-1.2381	-0.00073713	0.16272	9.6873E-05	595.3535315249064	15.234	0.1592	15.234	15.13	15.289	0					5	3	2	0	0	0	0.67983	1	4135	4135		14.137	1.9303	1	937120			24710	3308	16283	16344	25049	25049					0.10725265741643852
LLKGDAHS	8	Unmodified	_LLKGDAHS_					0	0	0		nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF;nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3;ENST00000525231.5_1_1:108152106-108185366:-|nuORF;ENST00000479977.6_1_1:108152551-108231104:-|nuORF	nc|ENSG00000134215|Q9UKW4-3|VAV3	nc|ENSG00000134215|Q9UKW4-3|VAV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.7323303222656	2	420.732335	839.450116	-0.087341	-3.6747E-05	-0.38822	-0.00016334	-0.47556	-0.00020008	420.7323096539112	16.933	0.11726	16.933	16.863	16.98	0					4	2	2	0	0	0	0.63077	1	4946	4946		44.117	1.6423	1	80299			24711	3897	16284	16345	25050	25050					0.02396942691905224
LLKHTAWS	8	Unmodified	_LLKHTAWS_					0	0	0			REV__METAP1|p.A55Hfs*9|1|0.04|ENSG00000164024|chr4:99028914-99028915|-/CATTTTAAGGAATATT|frameshift_variant	REV__METAP1|p.A55Hfs*9|1|0.04|ENSG00000164024|chr4:99028914-99028915|-/CATTTTAAGGAATATT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2715148925781	2	478.271627	954.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.347	1	32.347	31.847	32.847	0								0	0	0	1.7419	1	11241	11241		30.504	0.6621	1		+		24712	15948	16285	16346	25051	25051					0.0496179499699565
LLKKTLQK	8	Unmodified	_LLKKTLQK_					0	0	0		MAST2-HP1BP3|1|fusion;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	MAST2-HP1BP3|1|fusion	MAST2-HP1BP3|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.5583801269531	3	324.558577	970.653902	0.2886	9.3667E-05	-0.029973	-9.7279E-06	0.25863	8.3939E-05	324.5583797007656	15.932	0.087863	15.932	15.891	15.979	0					6	4	2	0	0	0	0.74117	1	3548	3548		38.806	0	1	53492			24713	11349	16286	16347	25052	25052					0.16740087133371162
LLKLYISC	8	Unmodified	_LLKLYISC_					0	0	0			REV__ENSG00000127946|ENST00000336926|HIP1	REV__ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7821960449219	2	476.780439	951.546325	2.2527	0.001074	1.7203	0.00082021	3.973	0.0018943	476.7811931275362	23.912	1.0125	23.912	23.401	24.414	0					54	20	6	0	0	0	0.57802	1	8184	8184		52.299	7.7681	1	2098900	+		24714	14502	16287	16348	25053	25053					0.06861374207642257
LLKNIKDKK	9	Unmodified	_LLKNIKDKK_					0	0	0		tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.24456787109375	3	367.24477	1098.71248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.244	1	14.244	13.744	14.744	0								0	0	0	0.31838	1	3500	3500		31.53	0	1				24715	22773	16288	16349	25054	25054					0.16707143707844807
LLKQLPDAI	9	Unmodified	_LLKQLPDAI_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.8156433105469	2	505.815867	1009.61718	-0.04495	-2.2737E-05	-0.043316	-2.191E-05	-0.088267	-4.4647E-05	505.8157815243606	35.708	0.38167	35.708	35.521	35.903	0					24	10	3	0	0	0	0.41113	1	13396	13396		40.778	5.1599	1	563600			24716	7245	16289	16350	25055	25055					0.11275790516776851
LLKSGEQLQL	10	Unmodified	_LLKSGEQLQL_					0	0	0			REV__EVPL|p.E1616G|1|0.2|ENSG00000167880|chr17:76008358-76008358|T/C|missense_variant	REV__EVPL|p.E1616G|1|0.2|ENSG00000167880|chr17:76008358-76008358|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.836181640625	2	564.834788	1127.65502	3.4705	0.0019602	-3.6419	-0.0020571	-0.17141	-9.6817E-05	564.8332013996823	43.481	0.18716	43.481	43.404	43.591	0					11	6	3	0	0	0	0.38194	1	17397	17397		58.23	5.2932	1	74520	+		24717	20649	16290	16351	25056	25056					0.09630256711625407
LLKVHVDPS	9	Unmodified	_LLKVHVDPS_					0	0	0		nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;ENST00000587391.5_1_19:36573967-36592308:+|nuORF	nc|ENSG00000075702|O43379|WDR62	nc|ENSG00000075702|O43379|WDR62	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.182	1	41.182	40.682	41.682	0								0	0	0	0.37496	1	13703	13703		19.104	8.0068	1				24718	1546	16291	16352	25057	25057					0.07810333339944009
LLKVIPHGGP	10	Unmodified	_LLKVIPHGGP_					0	0	0			REV__NFATC4|p.V451I|1|0.27|ENSG00000100968|chr14:24372595-24372595|G/A|missense_variant	REV__NFATC4|p.V451I|1|0.27|ENSG00000100968|chr14:24372595-24372595|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.2183837890625	3	344.218443	1029.6335	-0.031721	-1.0919E-05	0.057425	1.9767E-05	0.025705	8.848E-06	344.2183839824235	35.436	0.27165	35.436	35.229	35.501	0					12	5	3	0	0	0	0.72365	1	13646	13646		18.262	3.3972	1	167020	+		24719	21286	16292	16353	25058	25058					0.11986916473574638
LLKYRQSTL	9	Unmodified	_LLKYRQSTL_					0	0	0		ENSG00000150347|ENST00000279873|ARID5B;nc|ENSG00000150347|Q14865-3|ARID5B	ENSG00000150347|ENST00000279873|ARID5B	ENSG00000150347|ENST00000279873|ARID5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.5606689453125	3	374.560758	1120.66044	0.79456	0.00029761	-0.8462	-0.00031695	-0.051638	-1.9341E-05	374.5604055696695	20.972	0.43123	20.972	20.892	21.323	0					23	10	4	0	0	0	0.53083	1	6603	6603		29.17	0	1	1170700			24720	4922	16293	16354	25059	25059					0.10493980294086214
LLLAGLLGGAG	11	Unmodified	_LLLAGLLGGAG_					0	0	0		METRNL|p.L303*|1|0.41|ENSG00000176845|chr17:83094541-83094541|G/-|frameshift_variant;ENSG00000176845|ENST00000320095|METRNL	METRNL|p.L303*|1|0.41|ENSG00000176845|chr17:83094541-83094541|G/-|frameshift_variant	METRNL|p.L303*|1|0.41|ENSG00000176845|chr17:83094541-83094541|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.8025817871094	2	477.80276	953.590967	-0.64777	-0.00030951	0.79533	0.00038001	0.14756	7.0506E-05	477.8028689968072	37.589	0.30254	37.589	37.467	37.77	0					16	6	4	0	0	0	0.22425	1	14690	14690		71.378	15.874	1	480700			24721	6627	16294	16355	25060	25060					0.11231521345325746
LLLALPSLQQ	10	Unmodified	_LLLALPSLQQ_					0	0	0		N4BP1|p.P834L|1|0.07|ENSG00000102921|chr16:48543094-48543094|G/A|missense_variant	N4BP1|p.P834L|1|0.07|ENSG00000102921|chr16:48543094-48543094|G/A|missense_variant	N4BP1|p.P834L|1|0.07|ENSG00000102921|chr16:48543094-48543094|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.3419189453125	2	548.342249	1094.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.839	1	37.839	37.339	38.339	0								0	0	0	0.41253	1	14827	14827		26.693	0	1				24722	11400	16295	16356	25061	25061					0.12639748579613297
LLLCFVPGH	9	Unmodified	_LLLCFVPGH_					0	0	0			REV__ENST00000554399.1_1_14:52907374-53019172:-|nuORF	REV__ENST00000554399.1_1_14:52907374-53019172:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.28173828125	2	499.778231	997.541908	-1.035	-0.00051727	-2.7678	-0.0013833	-3.8028	-0.0019005	499.77659805496296	24.314	1.0466	24.314	24.15	25.196	0					79	34	3	0	0	0	0.52436	1	7527	7527		29.842	1.9593	1	585550	+		24723	20233	16296	16357	25062	25062					0.04303909784732696
LLLEKMGGSS	10	Unmodified	_LLLEKMGGSS_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC;ENST00000525366.5_1_11:61112793-61112862:+|nuORF	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.5247802734375	3	345.523204	1033.54778	1.5147	0.00052337	2.4178	0.0008354	3.9325	0.0013588	345.5241824897697	22.481	0.76351	22.481	22.321	23.084	0					31	15	3	0	0	0	0.69166	1	7472	7472		16.007	0	1	2694700			24724	4885	16297	16358	25063	25063					0.03234963505747146
LLLEVPDQR	9	Unmodified	_LLLEVPDQR_					0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.8132934570312	2	541.813856	1081.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.081	1	12.081	11.581	12.581	0								0	0	0	0.38667	1	2488	2488		14.865	1.9057	1		+		24725	14763	16298	16359	25064	25064					0.07561701023087153
LLLGPLGE	8	Unmodified	_LLLGPLGE_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.24896240234375	2	406.249829	810.485105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.018	1	50.018	49.518	50.518	0								0	0	0	1.7419	1	15081	15081		16.705	0	1				24726	7064	16299	16360	25065	25065					0.07228185499855044
LLLGVIFASGQ	11	Unmodified	_LLLGVIFASGQ_					0	0	0			REV__ENST00000597440.5_1_19:7913809-7917719:+|nuORF	REV__ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.22637939453125	3	373.225375	1116.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.586	1	24.586	24.086	25.086	0								0	0	0	0.43806	1	7546	7546		28.577	2.5133	1		+		24727	13137	16300	16361	25066	25066					0.10063462062544204
LLLGVPEE	8	Unmodified	_LLLGVPEE_					0	0	0		ENST00000269280.8_2_17:5487188-5487734:-|nuORF	ENST00000269280.8_2_17:5487188-5487734:-|nuORF	ENST00000269280.8_2_17:5487188-5487734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2505798339844	2	435.252569	868.490584	-0.18479	-8.0429E-05	-3.037	-0.0013219	-3.2218	-0.0014023	435.25089645456904	53.498	0.19749	53.498	53.386	53.583	0					13	12	2	0	0	0	0.79176	1	17118	17118		21.702	2.3424	1	50950			24728	8375	16301	16362	25067	25067					0.0510786429166501
LLLIMSCAR	9	Oxidation (M)	_LLLIM(Oxidation (M))SCAR_		LLLIM(1)SCAR		LLLIM(51)SCAR	0	0	1		nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2876586914062	2	518.288105	1034.56166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.592	1	29.592	29.092	30.092	0								0	0	0	0.19749	1	9356	9356		51.335	11.277	1				24729	11556	16302	16363	25068	25068		448			0.04575917733177448
LLLKKGDHR	9	Unmodified	_LLLKKGDHR_					0	0	0			REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.8952331542969	3	360.560981	1078.66111	-0.92604	-0.0003339	1.0786	0.00038891	0.15258	5.5013E-05	360.8958159331118	17.026	0.067759	17.026	16.993	17.061	0					4	2	2	0	0	0	0.35045	1	4197	4197		36.447	0	1	38247	+		24730	19772	16303	16364	25069	25069					0.12492819733802207
LLLKPGEEH	9	Unmodified	_LLLKPGEEH_					0	0	0		nc|ENSG00000101639|Q8TEP8-2|CEP192;CEP192|p.K1891Nfs*8|1|0.19|ENSG00000101639|chr18:13087068-13087068|A/-|frameshift_variant;nc|ENSG00000101639|Q8TEP8-1|CEP192;CEP192|p.R2464Kfs*5|1|0.13|ENSG00000101639|chr18:13116476-13116477|-/AAATCCA|frameshift_variant;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF	nc|ENSG00000101639|Q8TEP8-2|CEP192	nc|ENSG00000101639|Q8TEP8-2|CEP192	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.8659362792969	3	345.865958	1034.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.242	1	28.242	27.742	28.742	0								0	0	0	0.25856	1	10325	10325		32.812	4.7309	1				24731	482	16304	16365	25070	25070					0.060140294773418645
LLLLPIPLIVW	11	Unmodified	_LLLLPIPLIVW_					0	0	0		nc|ENSG00000026103|P25445-7|FAS;FAS|p.A301Sfs*20|1|0.36|ENSG00000026103|chr10:89014336-89014337|-/A|frameshift_variant;ENSG00000026103|ENST00000652046|FAS;ENST00000494410.5_1_10:90770523-90773122:+|nuORF;ENST00000371857.7_1_10:90770493-90770607:+|nuORF	nc|ENSG00000026103|P25445-7|FAS	nc|ENSG00000026103|P25445-7|FAS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	645.433349609375	2	645.43341	1288.85227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.756	1	46.756	46.256	47.256	0								0	0	0	0.45674	1	17932	17932		6.7355	0	1				24732	1133	16305	16366	25071	25071					0.21939507992374274
LLLLREPA	8	Unmodified	_LLLLREPA_					0	0	0			REV__ENST00000542123.5_1_12:12978967-12980208:+|nuORF	REV__ENST00000542123.5_1_12:12978967-12980208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7467956542969	2	462.797478	923.580402	-0.2932	-0.00013569	-0.53722	-0.00024862	-0.83042	-0.00038431	462.797402747956	32.319	0.22432	32.319	32.203	32.428	0					10	6	2	0	0	0	0.7126	1	11204	11204		31.955	0	1	84386	+		24733	20142	16306	16367	25072	25072					0.11555538690890899
LLLLYQQF	8	Unmodified	_LLLLYQQF_					0	0	0			REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.306396484375	2	519.305136	1036.59572	3.3592	0.0017445	0.1881	9.7682E-05	3.5473	0.0018421	519.3050050126619	41.354	1.0329	41.354	40.909	41.942	0					76	26	4	0	0	0	0.67475	1	16409	16409		37.028	0	1	272640	+		24734	12239	16307	16368	25073	25073					0.07888405488097305
LLLNCAMF	8	Unmodified	_LLLNCAMF_					0	0	0			REV__ENSG00000135801|ENST00000258281|TAF5L	REV__ENSG00000135801|ENST00000258281|TAF5L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7359924316406	2	462.737717	923.460881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.534	1	34.534	34.034	35.034	0								0	0	0	1.7419	1	13319	13319		28.254	1.4582	1		+		24735	14821	16308	16369	25074	25074					-0.003911142496804132
LLLNSGTLAL	10	Unmodified	_LLLNSGTLAL_					0	0	0		ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000424611.5_1_15:20644728-20658919:-|nuORF	ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENST00000430598.5_1_15:20613931-20667676:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.81451416015625	2	507.813325	1013.6121	-1.9082	-0.00096902	2.9425	0.0014943	1.0343	0.00052524	507.8146740691866	40.137	0.099445	40.137	40.071	40.17	0					7	5	2	0	0	0	0.52707	1	14266	14266		42.396	6.7778	1	49855			24736	9465	16309	16370	25075	25075					0.10583486654184071
LLLPAGCR	8	Unmodified	_LLLPAGCR_					0	0	0		EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant;ENSG00000182580|ENST00000330394|EPHB3	EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant	EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7511291503906	2	421.749473	841.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.656	1	45.656	45.156	46.156	0								0	0	0	1.7419	1	18291	18291		23.037	0	1				24737	6905	16310	16371	25076	25076					0.057310675791541144
LLLPLAARMS	10	Unmodified	_LLLPLAARMS_					0	0	0		nc|ENSG00000091436|Q9NYL2-2|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.2225646972656	3	362.223088	1083.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.147	1	50.147	49.647	50.647	0								0	0	0	0.4201	1	15107	15107		16.717	6.6135	1				24738	11450	16311	16372	25077	25077					0.10895825910347412
LLLPPTTT	8	Unmodified	_LLLPPTTT_					0	0	0		ENST00000280605.4_1_4:164394333-164394471:-|nuORF	ENST00000280605.4_1_4:164394333-164394471:-|nuORF	ENST00000280605.4_1_4:164394333-164394471:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.2612609863281	2	428.262936	854.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.526	1	53.526	53.026	54.026	0								0	0	0	1.7419	1	15788	15788		20.482	0	1				24739	8408	16312	16373	25078	25078					0.07824454671310832
LLLRLSVC	8	Unmodified	_LLLRLSVC_					0	0	0		ENST00000256682.8_1_12:49331189-49331324:-|nuORF	ENST00000256682.8_1_12:49331189-49331324:-|nuORF	ENST00000256682.8_1_12:49331189-49331324:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7879943847656	2	458.786056	915.557558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.903	1	52.903	52.403	53.403	0								0	0	0	1.7419	1	19428	19428		33.516	1.5607	1				24740	8266	16313	16374	25079	25079					0.09640196301768356
LLLYANRR	8	Unmodified	_LLLYANRR_					0	0	0		ENSG00000070018|ENST00000261349|LRP6;LRP6|p.F536Rfs*10|1|0.06|ENSG00000070018|chr12:12165235-12165236|-/GCTTTCT|frameshift_variant;LRP6|p.N38Wfs*23|1|0.37|ENSG00000070018|chr12:12244598-12244599|TT/-|frameshift_variant	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.2089538574219	3	340.210059	1017.60835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.533	1	46.533	46.033	47.033	0								0	0	0	1.7419	1	14340	14340		11.511	0	1				24741	1441	16314	16375	25080	25080					0.10024861670979135
LLLYLLSQ	8	Unmodified	_LLLYLLSQ_					0	0	0			REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.79730224609375	2	481.799686	961.584819	-2.9223	-0.001408	-1.7841	-0.00085959	-4.7064	-0.0022676	481.79868150679835	21.431	0.20037	21.431	21.329	21.529	0					10	4	3	0	0	0	0.54629	1	6217	6217		55.504	6.0627	1	1590700	+		24742	15607	16315	16376	25081	25081					0.10249003113801791
LLMDALIPLQ	10	Oxidation (M)	_LLM(Oxidation (M))DALIPLQ_		LLM(1)DALIPLQ		LLM(80)DALIPLQ	0	0	1			REV__ENST00000578515.5_1_17:8785060-8814811:-|nuORF	REV__ENST00000578515.5_1_17:8785060-8814811:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.8289184570312	2	571.828117	1141.64168	-0.22825	-0.00013052	1.3692	0.00078295	1.141	0.00065243	571.828708338368	27.026	0.17798	27.026	26.953	27.131	0					10	6	2	0	0	0	0.19797	1	8564	8564		79.713	8.8964	1	161800	+		24743	15120	16316	16377	25082	25082		574			0.07652682608022587
LLMEATPL	8	Unmodified	_LLMEATPL_					0	0	0		ENST00000265069.12_1_5:32417878-32420038:-|nuORF	ENST00000265069.12_1_5:32417878-32420038:-|nuORF	ENST00000265069.12_1_5:32417878-32420038:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2508544921875	2	444.248972	886.48339	3.2049	0.0014238	1.1917	0.00052943	4.3967	0.0019532	444.2494181287825	24.323	0.20121	24.323	24.223	24.424	0					10	6	2	0	0	0	0.57802	1	7425	7425		52.299	52.299	1	161510			24744	8344	16317	16378	25083	25083					0.03560808419592831
LLMGHLAEL	9	Unmodified	_LLMGHLAEL_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.78033447265625	2	498.78097	995.547388	-1.2476	-0.00062228	-0.34173	-0.00017045	-1.5893	-0.00079272	498.7809368482442	24.255	0.23539	24.255	24.108	24.343	0					9	7	2	0	0	0	0.55379	1	7402	7402		12.959	0	1	52194	+		24745	14503	16318	16379	25084	25084					0.04943588576554703
LLMSFFPAL	9	Unmodified	_LLMSFFPAL_					0	0	0			REV__ENST00000566288.1_1_15:42041665-42041710:+|nuORF	REV__ENST00000566288.1_1_15:42041665-42041710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.8611145019531	3	346.861268	1037.56198	0.18777	6.5129E-05	-0.66425	-0.0002304	-0.47649	-0.00016528	346.86104208017053	20.099	0.17428	20.099	20.023	20.197	0					8	5	2	0	0	0	0.47038	1	5313	5313		35.618	0.44007	1	130620	+		24746	20343	16319	16380	25085	25085					0.0446966072468058
LLNCKNEA	8	Unmodified	_LLNCKNEA_					0	0	0			REV__ENST00000536587.5_1_11:95546139-95548377:+|nuORF	REV__ENST00000536587.5_1_11:95546139-95548377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.23193359375	2	452.731477	903.448402	-0.3345	-0.00015144	-0.47683	-0.00021588	-0.81134	-0.00036732	452.73136300282783	19.461	0.39126	19.461	19.214	19.605	0					18	11	2	0	0	0	0.76283	1	4971	4971		25.45	0	1	567390	+		24747	16087	16320	16381	25086	25086					-0.007184343883750444
LLNEAGTRMR	10	Unmodified	_LLNEAGTRMR_					0	0	0			REV__RHPN2|p.L194Pfs*53|1|0.13|ENSG00000131941|chr19:33011691-33011691|A/-|frameshift_variant	REV__RHPN2|p.L194Pfs*53|1|0.13|ENSG00000131941|chr19:33011691-33011691|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.8126220703125	2	580.813864	1159.61318	0.57255	0.00033254	-3.2457	-0.0018851	-2.6732	-0.0015526	580.8119783452323	18.442	0.11114	18.442	18.376	18.487	0					5	3	2	0	0	0	0.61187	1	4824	4824		32.812	0	1	162460	+		24748	14639	16321	16382	25087	25087					0.039753777514533795
LLNGAKDAY	9	Unmodified	_LLNGAKDAY_					0	0	0		ENST00000292114.7_1_17:26688907-26688979:+|nuORF	ENST00000292114.7_1_17:26688907-26688979:+|nuORF	ENST00000292114.7_1_17:26688907-26688979:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2598571777344	2	482.758549	963.502546	0.58211	0.00028102	-0.87414	-0.000422	-0.29202	-0.00014098	482.758472795474	33.919	0.35007	33.919	33.698	34.048	0					25	9	5	0	0	0	0.30841	1	12623	12623		49.536	0	1	1363500			24749	8440	16322	16383	25088	25088					0.01933481034848228
LLNGHAENW	9	Unmodified	_LLNGHAENW_					0	0	0		ENST00000545113.1_1_12:21654766-21659882:+|nuORF	ENST00000545113.1_1_12:21654766-21659882:+|nuORF	ENST00000545113.1_1_12:21654766-21659882:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2588500976562	2	527.259248	1052.50394	1.2297	0.00064839	-1.3651	-0.00071977	-0.13538	-7.1381E-05	527.2587256087878	32.111	0.14248	32.111	32.033	32.175	0					7	4	2	0	0	0	0.42902	1	11128	11128		39.253	0	1	101780			24750	10572	16323	16384	25089	25089					-0.02020884876378659
LLNGNENGL	9	Unmodified	_LLNGNENGL_					0	0	0			REV__ENSG00000141664|ENST00000269499|ZCCHC2	REV__ENSG00000141664|ENST00000269499|ZCCHC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2456970214844	2	472.245806	942.47706	-0.58207	-0.00027488	0.27614	0.00013041	-0.30592	-0.00014447	472.24596139986437	23.998	0.44663	23.998	23.819	24.265	0					22	10	4	0	0	0	0.27249	1	8012	8012		52.937	3.4007	1	1483200	+		24751	15128	16324	16385	25090	25090					0.003520065124348548
LLNGQVAL	8	Unmodified	_LLNGQVAL_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2528076171875	2	414.252903	826.491253	0.094496	3.9145E-05	0.32125	0.00013308	0.41574	0.00017222	414.25300017615604	30.085	0.30303	30.085	29.907	30.21	0					15	7	3	0	0	0	0.61433	1	10172	10172		46.766	0	1	132050	+		24752	21069	16325	16386	25091	25091					0.07106703731381003
LLNLLAGLGA	10	Unmodified	_LLNLLAGLGA_					0	0	0		ENSG00000277494|ENST00000622500|GPIHBP1	ENSG00000277494|ENST00000622500|GPIHBP1	ENSG00000277494|ENST00000622500|GPIHBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.80279541015625	2	477.80276	953.590967	-2.8668	-0.0013698	2.4414	0.0011665	-0.42543	-0.00020327	477.80389588820884	37.425	0.1462	37.425	37.365	37.511	0					11	7	2	0	0	0	0.57532	1	13396	13396		37.159	0	1	107260			24753	8119	16326	16387	25092	25092					0.11231521345325746
LLNLQAVIA	9	Unmodified	_LLNLQAVIA_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.802490234375	2	477.80276	953.590967	0.01431	6.8374E-06	0.80613	0.00038517	0.82044	0.00039201	477.8025144409185	37.41	0.14919	37.41	37.31	37.459	0					13	8	3	0	0	0	0.35045	1	12242	12242		45.952	8.7928	1	50728			24754	2315	16327	16388	25093	25093					0.11231521345314377
LLNNTWLS	8	Unmodified	_LLNNTWLS_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.76104736328125	2	480.761092	959.507631	2.3347	0.0011224	-3.2833	-0.0015785	-0.94864	-0.00045607	480.75990651597755	24.356	0.36895	24.356	24.196	24.565	0					22	7	4	0	0	0	0.49216	1	8379	8379		60.972	0	1	3085800			24755	1599	16328	16389	25094	25094					0.026257848974637454
LLNYLAHMM	9	Unmodified	_LLNYLAHMM_					0	0	0			REV__tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	REV__tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2802734375	2	553.28028	1104.54601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.155	1	33.155	32.655	33.655	0								0	0	0	0.31623	1	12669	12669		31.955	2.7848	1		+		24756	22077	16329	16390	25095	25095					-0.002083687838876358
LLPAGAVQG	9	Unmodified	_LLPAGAVQG_					0	0	0		ENST00000495599.1_1_X:23685681-23689545:+|nuORF;ENSG00000123131|ENST00000379341|PRDX4	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2449645996094	2	413.245078	824.475603	0.060814	2.5131E-05	-0.18563	-7.6709E-05	-0.12481	-5.1578E-05	413.24496948849753	23.716	0.71653	23.716	23.312	24.029	0					31	14	4	0	0	0	0.50461	1	8127	8127		31.955	3.7006	1	1183500			24757	3301	16330	16391	25096	25096					0.05634417214332643
LLPAGLASF	9	Unmodified	_LLPAGLASF_					0	0	0		CLEC18B|p.Y150Tfs*26|1|0.45|ENSG00000140839|chr16:74418067-74418067|A/-|frameshift_variant;CLEC18B|p.L224Sfs*11|1|0.12|ENSG00000140839|chr16:74413044-74413044|C/-|frameshift_variant;nc|ENSG00000157335|Q8NCF0-2|CLEC18C;ENST00000569201.6_1_16:70208088-70217386:+|nuORF;ENST00000564976.5_1_16:70208088-70217795:+|nuORF;ENSG00000157335|ENST00000541793|CLEC18C;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B	CLEC18B|p.Y150Tfs*26|1|0.45|ENSG00000140839|chr16:74418067-74418067|A/-|frameshift_variant	CLEC18B|p.Y150Tfs*26|1|0.45|ENSG00000140839|chr16:74418067-74418067|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.76141357421875	2	444.763104	887.511654	-0.46998	-0.00020903	-1.8604	-0.00082744	-2.3304	-0.0010365	444.76214192167544	36.757	0.26667	36.757	36.681	36.948	0					12	5	3	0	0	0	0.41354	1	14315	14315		40.573	0	1	132270			24758	552	16331	16392	25097	25097					0.06339874391176181
LLPANGVP	8	Unmodified	_LLPANGVP_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	390.7326354980469	2	390.734346	779.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.204	1	46.204	45.704	46.704	0								0	0	0	1.7419	1	14272	14272		21.702	6.0661	1		+		24759	15549	16332	16393	25098	25098					0.055590321856129776
LLPGLTEIP	9	Unmodified	_LLPGLTEIP_					0	0	0		ENST00000588933.5_1_19:9529933-9544772:-|nuORF	ENST00000588933.5_1_19:9529933-9544772:-|nuORF	ENST00000588933.5_1_19:9529933-9544772:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	318.196044921875	3	318.195304	951.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.169	1	47.169	46.669	47.669	0								0	0	0	0.39036	1	18849	18849		9.7057	0	1				24760	10929	16333	16394	25099	25099					0.08636412734119858
LLPHLGIDRS	10	Unmodified	_LLPHLGIDRS_					0	0	0		ENST00000373593.5_1_1:32682924-32686772:-|nuORF	ENST00000373593.5_1_1:32682924-32686772:-|nuORF	ENST00000373593.5_1_1:32682924-32686772:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.2210693359375	3	374.220624	1119.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.778	1	16.778	16.278	17.278	0								0	0	0	0.41253	1	4616	4616		25.126	4.2888	1				24761	8999	16334	16395	25100	25100					0.08500809634256257
LLPHSGPLGA	10	Unmodified	_LLPHSGPLGA_					0	0	0			REV__ENST00000589764.1_1_18:12067489-12068164:-|nuORF	REV__ENST00000589764.1_1_18:12067489-12068164:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2754821777344	2	481.276909	960.539266	-1.351	-0.00065023	-1.1524	-0.00055464	-2.5035	-0.0012049	481.27677966567063	28.122	0.28194	28.122	27.987	28.269	0					19	10	2	0	0	0	0.56015	1	9040	9040		38.806	0	1	102940	+		24762	20512	16335	16396	25101	25101					0.05741777651417124
LLPIVHSTKN	10	Unmodified	_LLPIVHSTKN_					0	0	0		ENSG00000146856|ENST00000436302|AGBL3;nc|ENSG00000146856|Q8NEM8|AGBL3	ENSG00000146856|ENST00000436302|AGBL3	ENSG00000146856|ENST00000436302|AGBL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.56072998046875	3	374.560758	1120.66044	0.74031	0.00027729	-0.79673	-0.00029842	-0.056415	-2.1131E-05	374.56045397448975	20.883	0.41026	20.883	20.828	21.238	0					13	8	3	0	0	0	0.66185	1	6720	6720		31.634	15.627	1	2259100			24763	4752	16336	16397	25102	25102					0.10493980294063476
LLPKAMIEVE	10	Unmodified	_LLPKAMIEVE_					0	0	0		GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	381.55340576171875	3	381.554504	1141.64168	-1.1347	-0.00043295	-1.3005	-0.00049623	-2.4352	-0.00092917	381.5539376065584	27.028	0.11749	27.028	26.963	27.08	0					6	4	2	0	0	0	0.69544	1	8574	8574		22.58	1.7425	1	45025			24764	2499	16337	16398	25103	25103					0.0765268260799985
LLPKAPPL	8	Unmodified	_LLPKAPPL_					0	0	0		MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant;ENSG00000138379|ENST00000260950|MSTN;ENSG00000135414|ENST00000257868|GDF11	MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.7838439941406	2	424.783839	847.553125	0.3215	0.00013657	0.097602	4.146E-05	0.4191	0.00017803	424.7837400143297	34.016	0.10814	34.016	33.953	34.061	0					6	4	2	0	0	0	0.79176	1	11097	11097		21.702	0	1	78533			24765	3990	16338	16399	25104	25104					0.12325055150506614
LLPPIDSRP	9	Unmodified	_LLPPIDSRP_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.533935546875	3	336.53432	1006.58113	0.24146	8.126E-05	-0.53598	-0.00018038	-0.29452	-9.9115E-05	336.53414190694474	30.967	0.64082	30.967	30.586	31.227	0					48	26	2	0	0	0	0.57706	1	9952	9952		24.519	6.2571	1	123820	+		24766	13934	16339	16400	25105	25105					0.07810333339944009
LLPPKLPTK	9	Unmodified	_LLPPKLPTK_					0	0	0			REV__SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	REV__SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.2273864746094	3	336.226827	1005.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.172	1	32.172	31.672	32.672	0								0	0	0	0.39362	1	11786	11786		12.812	4.5766	1		+		24767	21596	16340	16401	25106	25106					0.15604971276115975
LLPPKLPTK	9	Unmodified	_LLPPKLPTK_					0	0	0			REV__SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	REV__SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.2274475097656	3	336.226827	1005.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.44	1	29.44	28.94	29.94	0								0	0	0	0.39362	1	9903	9903		12.812	4.5766	1		+		24768	21596	16340	16401	25107	25107					0.15604971276115975
LLPPPALK	8	Unmodified	_LLPPPALK_					0	0	0		ENSG00000120341|ENST00000308284|SEC16B;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF;ARHGAP31|p.S671L|1|0.05|ENSG00000031081|chr3:119413941-119413941|C/T|missense_variant	ENSG00000120341|ENST00000308284|SEC16B	ENSG00000120341|ENST00000308284|SEC16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.7836608886719	2	424.783839	847.553125	0.93924	0.00039898	-1.3221	-0.00056161	-0.38286	-0.00016263	424.7832372467657	34.298	0.3634	34.298	34.181	34.545	0					13	9	2	0	0	0	0.61433	1	12775	12775		46.766	0	1	369930			24769	3169	16341	16402	25108	25108					0.12325055150495245
LLPPPALK	8	Unmodified	_LLPPPALK_					0	0	0		ENSG00000120341|ENST00000308284|SEC16B;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF;ARHGAP31|p.S671L|1|0.05|ENSG00000031081|chr3:119413941-119413941|C/T|missense_variant	ENSG00000120341|ENST00000308284|SEC16B	ENSG00000120341|ENST00000308284|SEC16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.7837219238281	2	424.783839	847.553125	-0.019235	-8.1709E-06	-0.47017	-0.00019972	-0.48941	-0.00020789	424.7836446107121	34.031	0.18008	34.031	33.961	34.141	0					10	5	2	0	0	0	0.74117	1	12000	12000		28.254	0	1	141550			24770	3169	16341	16402	25109	25109					0.12325055150495245
LLPPRDLSP	9	Unmodified	_LLPPRDLSP_					0	0	0		nc|ENSG00000181652|Q674R7-2|ATG9B;ENSG00000181652|ENST00000639579|ATG9B	nc|ENSG00000181652|Q674R7-2|ATG9B	nc|ENSG00000181652|Q674R7-2|ATG9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5344543457031	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.011	1	34.011	33.511	34.511	0								0	0	0	0.36766	1	11448	11448		14.865	0.72775	1				24771	6860	16342	16403	25110	25110					0.0781033333993264
LLPPVAGG	8	Unmodified	_LLPPVAGG_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.2220458984375	2	362.223614	722.432676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.789	1	47.789	47.289	48.289	0								0	0	0	1.7419	1	14598	14598		24.504	0	1				24772	1397	16343	16404	25111	25111					0.06035647156909363
LLPRPQLSAP	10	Unmodified	_LLPRPQLSAP_					0	0	0			REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.5574951171875	3	364.557236	1090.64988	-0.10331	-3.7663E-05	0.42163	0.00015371	0.31832	0.00011605	364.5574700387282	32.872	0.27848	32.872	32.695	32.974	0					11	7	2	0	0	0	0.63224	1	11460	11460		30.318	3.2704	1	68827	+		24773	20347	16344	16405	25112	25112					0.10817997639628629
LLPSLMKDF	9	Unmodified	_LLPSLMKDF_					0	0	0		tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.296142578125	2	532.296453	1062.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.717	1	35.717	35.217	36.217	0								0	0	0	0.3368	1	12086	12086		27.882	2.3082	1				24774	22586	16345	16406	25113	25113					0.04956741890782723
LLPTHKDAL	9	Unmodified	_LLPTHKDAL_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant;SACS|p.S2058Ffs*2|1|0.3|ENSG00000151835|chr13:23337703-23337704|-/A|frameshift_variant;SACS|p.P2063Sfs*7|1|0.36|ENSG00000151835|chr13:23337689-23337690|-/A|frameshift_variant;SACS|p.S2058Lfs*19|1|0.1|ENSG00000151835|chr13:23337704-23337704|A/-|frameshift_variant;SACS|p.T893A|1|0.09|ENSG00000151835|chr13:23341199-23341199|T/C|missense_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.556	1	43.556	43.056	44.056	0								0	0	0	0.34228	1	17025	17025		19.997	0	1				24775	4990	16346	16407	25114	25114					0.0781033333993264
LLPTVFGIL	9	Unmodified	_LLPTVFGIL_					0	0	0			REV__ENSG00000147138|ENST00000645147|GPR174	REV__ENSG00000147138|ENST00000645147|GPR174	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.8077392578125	2	486.810054	971.605554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.304	1	21.304	20.804	21.804	0								0	0	0	0.20652	1	6094	6094		50.025	0	1		+		24776	15334	16347	16408	25115	25115					0.11861593493460987
LLPYIVNI	8	Unmodified	_LLPYIVNI_					0	0	0		ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7955627441406	2	472.794404	943.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.118	1	33.118	32.618	33.618	0								0	0	0	1.7419	1	12219	12219		14.664	0	1				24777	1710	16348	16409	25116	25116					0.10021020459362262
LLQAHAAAQAL	11	Unmodified	_LLQAHAAAQAL_					0	0	0		ENSG00000181284|ENST00000323206|TMEM102	ENSG00000181284|ENST00000323206|TMEM102	ENSG00000181284|ENST00000323206|TMEM102	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.3202514648438	2	553.819473	1105.62439	1.3149	0.00072824	-0.42949	-0.00023786	0.88546	0.00049039	553.8193977070147	26.446	0.23736	26.446	26.32	26.557	0					18	8	3	0	0	0	0.66915	1	8020	8020		9.7057	0	1	127250			24778	6847	16349	16410	25117	25117					0.07580523117212579
LLQAHGGTLP	10	Unmodified	_LLQAHGGTLP_					0	0	0		KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;ENSG00000226650|ENST00000435029|KIF4B	KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant	KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1943664550781	3	336.194186	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.475	1	18.475	17.975	18.975	0								0	0	0	0.4201	1	4831	4831		22.58	6.1065	1				24779	1844	16350	16411	25118	25118					0.05817162680148158
LLQDDFGIKPG	11	Unmodified	_LLQDDFGIKPG_					0	0	0		ENSG00000243414|ENST00000427199|TICAM2;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENSG00000243414|ENST00000427199|TICAM2	ENSG00000243414|ENST00000427199|TICAM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.8222045898438	2	601.824421	1201.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.014	1	29.014	28.514	29.514	0								0	0	0	0.41351	1	9411	9411		18.262	0	1				24780	7953	16351	16412	25119	25119					0.04153666331944805
LLQDSGGRL	9	Unmodified	_LLQDSGGRL_					0	0	0		ENSG00000253767|ENST00000398604|PCDHGA8;PCDHGA8|p.N788Kfs*2|1|0.27|ENSG00000253767|chr5:141395171-141395172|-/A|frameshift_variant;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	ENSG00000253767|ENST00000398604|PCDHGA8	ENSG00000253767|ENST00000398604|PCDHGA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.76861572265625	2	479.769448	957.524344	-0.30918	-0.00014834	-2.2823	-0.001095	-2.5915	-0.0012433	479.76861616326005	29.381	0.28525	29.381	29.141	29.426	0					10	7	2	0	0	0	0.21263	1	9872	9872		60.118	1.3363	1	136710			24781	8002	16352	16413	25120	25120					0.04388285783431911
LLQEGQHKQ	9	Unmodified	_LLQEGQHKQ_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.86474609375	3	360.864729	1079.57236	0.4907	0.00017708	-0.36402	-0.00013136	0.12667	4.5712E-05	360.864579695633	24.834	0.21118	24.834	24.729	24.94	0					11	4	3	0	0	0	0.60749	1	8750	8750		16.007	3.0493	1	557220			24782	8931	16353	16414	25121	25121					0.035753597034727136
LLQGPSQPG	9	Unmodified	_LLQGPSQPG_					0	0	0			REV__ENSG00000185798|ENST00000332629|WDR53	REV__ENSG00000185798|ENST00000332629|WDR53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.74530029296875	2	448.745442	895.476331	-0.40088	-0.0001799	-0.78431	-0.00035196	-1.1852	-0.00053185	448.7453160356876	33.608	0.21575	33.608	33.5	33.716	0					8	4	2	0	0	0	0.39215	1	12805	12805		42.396	0	1	277860	+		24783	17048	16354	16415	25122	25122					0.02441211863379067
LLQLMDPPV	9	Unmodified	_LLQLMDPPV_					0	0	0			REV__nc|ENSG00000162413|Q9UJP4-2|KLHL21	REV__nc|ENSG00000162413|Q9UJP4-2|KLHL21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2874755859375	2	513.288628	1024.5627	0.084317	4.3279E-05	0.024442	1.2546E-05	0.10876	5.5825E-05	513.2886359749356	37.952	0.67529	37.952	37.467	38.143	0					25	14	2	0	0	0	0.39215	1	14756	14756		42.396	6.7778	1	1133800	+		24784	15810	16355	16416	25123	25123					0.051404553737029346
LLQLPYVVRK	10	Unmodified	_LLQLPYVVRK_					0	0	0			REV__TAS1R2|p.W418L|1|0.33|ENSG00000179002|chr1:18854217-18854217|C/A|missense_variant	REV__TAS1R2|p.W418L|1|0.33|ENSG00000179002|chr1:18854217-18854217|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.7355651855469	3	410.264053	1227.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.822	1	13.822	13.322	14.322	0								0	0	0	0.41137	1	3452	3452		27.047	3.6694	1		+		24785	21623	16356	16417	25124	25124					0.16555405633266673
LLQLRHGPLAP	11	Unmodified	_LLQLRHGPLAP_					0	0	0			REV__ENST00000327359.7_1_14:105695225-105781678:-|nuORF	REV__ENST00000327359.7_1_14:105695225-105781678:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.8717651367188	2	607.87204	1213.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.866	1	31.866	31.366	32.366	0								0	0	0	0.45674	1	12059	12059		15.642	0.77694	1		+		24786	18361	16357	16418	25125	25125					0.13121064313645547
LLQPMMVDV	9	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))LLQPM(Oxidation (M))M(Oxidation (M))VDV_		LLQPM(1)M(1)VDV		LLQPM(48)M(48)VDV	1	0	2		ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENST00000586180.1_1_19:3118803-3121174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.2756958007812	2	560.27486	1118.53517	1.3344	0.00074761	-0.37633	-0.00021085	0.95803	0.00053676	560.2746180247461	22.747	0.56164	22.747	22.538	23.1	0					36	11	4	0	0	0	0.32741	1	7771	7771		47.916	12.297	1	2785800			24787	10901	16358	16419	25126	25126		426;427			-0.019358159488092497
LLQPPFFHP	9	Unmodified	_LLQPPFFHP_					0	0	0		ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.3013916015625	2	548.302927	1094.5913	0.48283	0.00026474	-3.1482	-0.0017262	-2.6654	-0.0014614	548.3013605361508	20.428	0.24218	20.428	20.322	20.564	0					8	5	2	0	0	0	0.14603	1	6348	6348		42.474	0	1	323750			24788	7516	16359	16420	25127	25127					0.04778941065183062
LLQRLSHQQ	9	Unmodified	_LLQRLSHQQ_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.8237915039062	2	561.822547	1121.63054	1.8414	0.0010346	0.29849	0.0001677	2.1399	0.0012023	561.8226711481215	14.935	0.21532	14.935	14.83	15.045	0					10	4	3	0	0	0	0.1424	1	3994	3994		69.628	6.3214	1	877100	+		24789	13595	16360	16421	25128	25128					0.07459041348738538
LLQSTFKRV	9	Unmodified	_LLQSTFKRV_					0	0	0			REV__nc|ENSG00000116906|O15228-2|GNPAT	REV__nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.55712890625	3	364.557236	1090.64988	1.0674	0.00038913	-1.0379	-0.00037838	0.029488	1.075E-05	364.5567828395687	32.986	0.48947	32.986	32.909	33.399	0					17	10	2	0	0	0	0.42902	1	12493	12493		39.253	0	1	774680	+		24790	14171	16361	16422	25129	25129					0.10817997639651367
LLQTVTSNAY	10	Unmodified	_LLQTVTSNAY_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.2960815429688	2	555.295496	1108.57644	1.3075	0.00072607	0.84206	0.00046759	2.1496	0.0011937	555.2957161424724	31.685	0.13262	31.685	31.581	31.713	0					9	6	2	0	0	0	0.71938	1	10186	10186		19.104	0.77911	1	36275	+		24791	12026	16362	16423	25130	25130					0.026494044065202615
LLRATPRSQ	9	Unmodified	_LLRATPRSQ_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.876708984375	3	347.876969	1040.60908	1.4919	0.000519	-1.5487	-0.00053875	-0.056769	-1.9749E-05	347.87630924484614	12.097	0.17502	12.097	12.014	12.189	0					6	4	2	0	0	0	0.55379	1	2508	2508		26.693	2.1737	1	65554	+		24792	17502	16363	16424	25131	25131					0.09039656320010181
LLRCGQRLDE	10	Unmodified	_LLRCGQRLDE_					0	0	0		nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;MYO3B|p.K1243Sfs*25|1|0.21|ENSG00000071909|chr2:170543980-170543980|A/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B;MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant;MYO3B|p.G1143Efs*93|1|0.19|ENSG00000071909|chr2:170514975-170514975|G/-|frameshift_variant;ENST00000602629.1_1_2:171055868-171092621:+|nuORF	nc|ENSG00000071909|Q8WXR4-6|MYO3B	nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.8197021484375	2	601.819147	1201.62374	2.0894	0.0012574	-1.0505	-0.00063224	1.0389	0.0006252	601.8185877385613	23.426	0.76091	23.426	23.318	24.079	0					35	15	4	0	0	0	0.56063	1	7957	7957		26.693	0	1	583750			24793	1479	16364	16425	25132	25132					0.03099360405894913
LLRCRVPSLLL	11	Unmodified	_LLRCRVPSLLL_					0	0	0		ENST00000258955.6_1_17:48562280-48562508:+|nuORF	ENST00000258955.6_1_17:48562280-48562508:+|nuORF	ENST00000258955.6_1_17:48562280-48562508:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.2734069824219	3	428.272442	1281.7955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.49	1	18.49	17.99	18.99	0								0	0	0	0.45674	1	4838	4838		14.086	3.9821	1				24794	8279	16365	16426	25133	25133					0.16587137164219712
LLRENEKQ	8	Unmodified	_LLRENEKQ_					0	0	0			REV__XRCC4|p.L144P|1|0.09|ENSG00000152422|chr5:83195885-83195885|T/C|missense_variant	REV__XRCC4|p.L144P|1|0.09|ENSG00000152422|chr5:83195885-83195885|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2890014648438	2	515.288005	1028.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.587	1	22.587	22.087	23.087	0								0	0	0	1.7419	1	6409	6409		30.504	0	1		+		24795	15507	16366	16427	25134	25134					0.04831957329179204
LLRRLRHE	8	Unmodified	_LLRRLRHE_					0	0	0		AluSz_dup98854|chr20:44349788-44350099:+|1.367513856940714|0.2321393134284999|2.56|473.0|6|2|sense	AluSz_dup98854|chr20:44349788-44350099:+|1.367513856940714|0.2321393134284999|2.56|473.0|6|2|sense	AluSz_dup98854|chr20:44349788-44350099:+|1.367513856940714|0.2321393134284999|2.56|473.0|6|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.841552734375	2	546.841074	1091.66759	1.8541	0.0010139	-3.0046	-0.001643	-1.1505	-0.00062913	546.8396385708702	56.129	0.15275	56.129	56.019	56.171	0					13	9	2	0	0	0	0.75243	1	16275	16275		26.796	1.3459	1	64487			24796	138	16367	16428	25135	25135					0.12542757685173456
LLRRLTAGP	9	Unmodified	_LLRRLTAGP_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.8819580078125	3	332.881943	995.623999	-0.70287	-0.00023397	0.18499	6.1581E-05	-0.51787	-0.00017239	332.8820878198573	26.97	0.33169	26.97	26.833	27.165	0					20	11	3	0	0	0	0.51817	1	8516	8516		30.318	0	1	235320	+		24797	16487	16368	16429	25136	25136					0.1260114818803686
LLSDKATSPL	10	Unmodified	_LLSDKATSPL_					0	0	0		ENST00000596338.5_1_19:49685858-49692185:+|nuORF;TRPM4|p.F902Sfs*22|1|0.3|ENSG00000130529|chr19:49200356-49200356|T/-|frameshift_variant;nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;TRPM4|p.W1124Gfs*5|1|0.32|ENSG00000130529|chr19:49210750-49210751|GT/-|frameshift_variant;ENSG00000130529|ENST00000252826|TRPM4	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8004150390625	2	522.800414	1043.58628	0.78629	0.00041107	-0.27955	-0.00014615	0.50674	0.00026492	522.8001393620134	33.208	0.41736	33.208	33.043	33.46	0					46	17	4	0	0	0	0.41384	1	10752	10752		54.722	17.563	1	596260			24798	3648	16369	16430	25137	25137					0.06622592411895312
LLSDKATSPL	10	Unmodified	_LLSDKATSPL_					0	0	0		ENST00000596338.5_1_19:49685858-49692185:+|nuORF;TRPM4|p.F902Sfs*22|1|0.3|ENSG00000130529|chr19:49200356-49200356|T/-|frameshift_variant;nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;TRPM4|p.W1124Gfs*5|1|0.32|ENSG00000130529|chr19:49210750-49210751|GT/-|frameshift_variant;ENSG00000130529|ENST00000252826|TRPM4	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8005981445312	2	522.800414	1043.58628	0.086662	4.5307E-05	0.28361	0.00014827	0.37028	0.00019358	522.8004809186767	33.464	0.45023	33.464	33.288	33.739	0					36	11	4	0	0	0	0.13663	1	12342	12342		89.029	23.563	1	4331200			24799	3648	16369	16430	25138	25138					0.06622592411895312
LLSDKATSPL	10	Unmodified	_LLSDKATSPL_					0	0	0		ENST00000596338.5_1_19:49685858-49692185:+|nuORF;TRPM4|p.F902Sfs*22|1|0.3|ENSG00000130529|chr19:49200356-49200356|T/-|frameshift_variant;nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;TRPM4|p.W1124Gfs*5|1|0.32|ENSG00000130529|chr19:49210750-49210751|GT/-|frameshift_variant;ENSG00000130529|ENST00000252826|TRPM4	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.8010864257812	2	522.800414	1043.58628	0.44829	0.00023436	0.0055827	2.9186E-06	0.45387	0.00023728	522.800365831714	33.292	0.42661	33.292	33.117	33.544	0					47	17	4	0	0	0	0.22691	1	11124	11124		76.17	17.94	1	1019200			24800	3648	16369	16430	25139	25139					0.06622592411895312
LLSDKATSPL	10	Unmodified	_LLSDKATSPL_					0	0	0		ENST00000596338.5_1_19:49685858-49692185:+|nuORF;TRPM4|p.F902Sfs*22|1|0.3|ENSG00000130529|chr19:49200356-49200356|T/-|frameshift_variant;nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;TRPM4|p.W1124Gfs*5|1|0.32|ENSG00000130529|chr19:49210750-49210751|GT/-|frameshift_variant;ENSG00000130529|ENST00000252826|TRPM4	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3016357421875	2	522.800414	1043.58628	0.34412	0.00017991	0.65389	0.00034186	0.99802	0.00052176	522.8009763110701	33.302	0.23275	33.302	33.178	33.411	0					13	9	2	0	0	0	0.58189	1	11140	11140		36.447	6.129	1	67453			24801	3648	16369	16430	25140	25140					0.06622592411895312
LLSDKATSPL	10	Unmodified	_LLSDKATSPL_					0	0	0		ENST00000596338.5_1_19:49685858-49692185:+|nuORF;TRPM4|p.F902Sfs*22|1|0.3|ENSG00000130529|chr19:49200356-49200356|T/-|frameshift_variant;nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;TRPM4|p.W1124Gfs*5|1|0.32|ENSG00000130529|chr19:49210750-49210751|GT/-|frameshift_variant;ENSG00000130529|ENST00000252826|TRPM4	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8007202148438	2	522.800414	1043.58628	-0.044448	-2.3238E-05	0.7225	0.00037772	0.67805	0.00035449	522.8006110144045	33.472	0.2784	33.472	33.326	33.605	0					12	6	2	0	0	0	0.44292	1	12801	12801		51.528	17.606	1	382100			24802	3648	16369	16430	25141	25141					0.06622592411895312
LLSDLEELN	9	Unmodified	_LLSDLEELN_					0	0	0		ENSG00000024862|ENST00000617445|CCDC28A;nc|ENSG00000024862|Q8IWP9|CCDC28A	ENSG00000024862|ENST00000617445|CCDC28A	ENSG00000024862|ENST00000617445|CCDC28A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2745361328125	2	523.274229	1044.53391	0.76414	0.00039986	-0.44011	-0.0002303	0.32403	0.00016956	523.2738583984727	35.978	0.76661	35.978	35.798	36.564	0					122	38	5	0	0	0	0.54267	1	11990	11990		27.882	1.1893	1	13484000			24803	1126	16370	16431	25142	25142					0.01342009278300793
LLSEAGSLVVG	11	Unmodified	_LLSEAGSLVVG_					0	0	0			REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8001098632812	2	522.800414	1043.58628	1.0905	0.0005701	-0.20612	-0.00010776	0.88436	0.00046234	522.8002852576267	33.293	0.30867	33.293	33.118	33.426	0					23	9	3	0	0	0	0.22009	1	11627	11627		71.877	0	1	374580	+		24804	17310	16371	16432	25143	25143					0.06622592411895312
LLSGEVVSYRF	11	Unmodified	_LLSGEVVSYRF_					0	0	0			REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.89959716796875	3	423.899439	1268.67649	0.37562	0.00015922	-0.088782	-3.7635E-05	0.28684	0.00012159	423.89933952875384	31.646	0.16306	31.646	31.538	31.702	0					7	3	3	0	0	0	0.57554	1	11965	11965		38.714	2.7142	1	182840	+		24805	12537	16372	16433	25144	25144					0.052896417403189844
LLSGGENATKL	11	Unmodified	_LLSGGENATKL_					0	0	0			REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.8099975585938	2	551.808771	1101.60299	0.58873	0.00032487	-0.32273	-0.00017808	0.26601	0.00014678	551.8087387460756	37.321	0.15083	37.321	37.207	37.358	0					7	4	2	0	0	0	0.40021	1	14146	14146		51.528	1.4942	1	122090	+		24806	14736	16373	16434	25145	25145					0.05625093297840067
LLSGSVLLLS	10	Unmodified	_LLSGSVLLLS_					0	0	0			REV__ENST00000563753.1_1_15:73884305-73925556:-|nuORF	REV__ENST00000563753.1_1_15:73884305-73925556:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.8169250488281	2	501.3157	1000.61685	0.14742	7.3906E-05	-0.54104	-0.00027123	-0.39362	-0.00019733	501.31525628356894	35.772	0.15735	35.772	35.712	35.869	0					8	5	2	0	0	0	0.64178	1	12767	12767		29.15	1.2673	1	50868	+		24807	15636	16374	16435	25146	25146					0.11656370796947613
LLSKCMRQGA	10	Unmodified	_LLSKCMRQGA_					0	0	0			REV__ENST00000346603.4_1_17:21075288-21081576:+|nuORF	REV__ENST00000346603.4_1_17:21075288-21081576:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7960205078125	2	553.794086	1105.57362	3.6227	0.0020062	-0.080524	-4.4594E-05	3.5421	0.0019616	553.7939400237977	28.186	0.26826	28.186	28.075	28.343	0					9	5	2	0	0	0	0.23612	1	10195	10195		75.043	75.043	1	1505800	+		24808	18483	16375	16436	25147	25147					0.02505534476381399
LLSLACVDL	9	Carbamidomethyl (C)	_LLSLAC(Carbamidomethyl (C))VDL_	LLSLAC(1)VDL		LLSLAC(53)VDL		0	1	0			REV__ENST00000327783.8_2_21:30953842-30959745:-|nuORF	REV__ENST00000327783.8_2_21:30953842-30959745:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2781982421875	2	502.27826	1002.54197	-0.92615	-0.00046518	1.03	0.00051737	0.1039	5.2186E-05	502.2786275882461	40.436	0.11049	40.436	40.342	40.453	0					10	6	2	0	0	0	0.26904	1	13526	13526		53.351	10.877	1	52267	+		24809	18365	16376	16437	25148	25148	650				0.0407986499405979
LLSLVEKVT	9	Unmodified	_LLSLVEKVT_					0	0	0		RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant;RYR2|p.A2213Lfs*22|1|0.28|ENSG00000198626|chr1:237633654-237633654|A/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.R2028H|1|0.13|ENSG00000198626|chr1:237625721-237625721|G/A|missense_variant	RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant	RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.31536865234375	2	501.3157	1000.61685	1.1201	0.00056153	-1.4699	-0.00073689	-0.34979	-0.00017536	501.31491959265475	35.923	0.31566	35.923	35.817	36.132	0					15	6	3	0	0	0	0.1424	1	13926	13926		69.628	4.1622	1	566560			24810	7580	16377	16438	25149	25149					0.11656370796947613
LLSLYQKY	8	Unmodified	_LLSLYQKY_					0	0	0		ENST00000592611.5_1_18:34415331-34809581:+|nuORF;ENST00000590617.5_1_18:34415331-34802187:+|nuORF;nc|ENSG00000150477|Q86T90-2|KIAA1328;ENSG00000150477|ENST00000280020|KIAA1328	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2952880859375	2	514.294768	1026.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.725	1	33.725	33.225	34.225	0								0	0	0	1.7419	1	11336	11336		21.702	7.927	1				24811	4925	16378	16439	25150	25150					0.0627581510843811
LLSNPHTLL	9	Unmodified	_LLSNPHTLL_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2980041503906	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.5	1	26.5	26	27	0								0	0	0	0.3368	1	8062	8062		27.882	2.3082	1				24812	7352	16379	16440	25151	25151					0.07810333339955378
LLSPRPSV	8	Unmodified	_LLSPRPSV_					0	0	0		ENST00000394339.2_1_4:124320716-124320803:+|nuORF	ENST00000394339.2_1_4:124320716-124320803:+|nuORF	ENST00000394339.2_1_4:124320716-124320803:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7665710449219	2	434.766178	867.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.507	1	40.507	40.007	41.007	0								0	0	0	1.7419	1	13084	13084		32.812	2.3088	1				24813	9173	16380	16441	25152	25152					0.07874392622716186
LLSSGEVSIS	10	Unmodified	_LLSSGEVSIS_					0	0	0			REV__nc|ENSG00000046651|O75665-3|OFD1	REV__nc|ENSG00000046651|O75665-3|OFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2688903808594	2	496.268947	990.523341	-0.060839	-3.0192E-05	-0.45813	-0.00022736	-0.51897	-0.00025755	496.26867962025767	35.494	0.25382	35.494	35.398	35.651	0					18	13	2	0	0	0	0.12663	1	11623	11623		90.777	14.003	1	127170	+		24814	13006	16381	16442	25153	25153					0.027700266238639415
LLSTASRTF	9	Unmodified	_LLSTASRTF_					0	0	0			REV__ENST00000259883.3_1_6:28249363-28249588:+|nuORF	REV__ENST00000259883.3_1_6:28249363-28249588:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2796936035156	2	498.279649	994.544745	0.69282	0.00034522	-0.85556	-0.00042631	-0.16274	-8.1091E-05	498.27922223211067	27.212	0.26325	27.212	27.127	27.39	0					10	6	2	0	0	0	0.16002	1	9489	9489		66.429	13.493	1	460830	+		24815	18007	16382	16443	25154	25154					0.04725456443247822
LLSTFNHF	8	Unmodified	_LLSTFNHF_					0	0	0		ENST00000402907.1_1_6:143664004-143664346:+|nuORF	ENST00000402907.1_1_6:143664004-143664346:+|nuORF	ENST00000402907.1_1_6:143664004-143664346:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.755859375	2	489.75581	977.497067	0.60308	0.00029536	-0.41705	-0.00020425	0.18602	9.1106E-05	489.75553947677696	41.419	0.17767	41.419	41.336	41.514	0					13	7	2	0	0	0	0.59411	1	16279	16279		50.025	2.1089	1	72741			24816	9258	16383	16444	25155	25155					0.007418022430442761
LLSTGPSH	8	Unmodified	_LLSTGPSH_					0	0	0			REV__ENST00000532632.1_3_14:24659613-24664187:-|nuORF	REV__ENST00000532632.1_3_14:24659613-24664187:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.2194519042969	2	406.21906	810.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.507	1	31.507	31.007	32.007	0								0	0	0	1.7419	1	10857	10857		33.516	4.366	1		+		24817	20073	16384	16445	25156	25156					0.010772538005653587
LLSVGRQD	8	Unmodified	_LLSVGRQD_					0	0	0		ENST00000541763.6_1_12:109994935-109999613:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.250732421875	2	444.250892	886.48723	0.53896	0.00023943	-1.3984	-0.00062124	-0.85945	-0.00038181	444.25038409963355	21.866	0.26255	21.866	21.759	22.021	0					8	5	2	0	0	0	0.5535	1	7328	7328		54.776	0	1	1659700			24818	10546	16385	16446	25157	25157					0.03944614237661881
LLSVVISAN	9	Unmodified	_LLSVVISAN_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2787780761719	2	458.279118	914.543683	-0.1559	-7.1447E-05	-0.090873	-4.1645E-05	-0.24678	-0.00011309	458.27912971360865	30.446	0.38255	30.446	30.235	30.617	0					13	8	2	0	0	0	0.35021	1	11337	11337		45.972	1.5951	1	300780	+		24819	22168	16386	16447	25158	25158					0.08299242074338053
LLTEKEGLV	9	Unmodified	_LLTEKEGLV_					0	0	0			REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2971496582031	2	501.297507	1000.58046	-0.59742	-0.00029948	-0.27033	-0.00013552	-0.86775	-0.000435	501.29745662666164	36.053	0.21802	36.053	35.931	36.149	0					7	4	2	0	0	0	0.39215	1	13979	13979		42.396	3.1433	1	123170	+		24820	17427	16387	16448	25159	25159					0.08019493900235375
LLTRLLKRD	9	Unmodified	_LLTRLLKRD_					0	0	0		ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.580078125	3	376.580152	1126.71863	0.78548	0.0002958	-1.0719	-0.00040366	-0.28643	-0.00010786	376.5797182455435	18.824	0.085194	18.824	18.773	18.858	0					4	2	2	0	0	0	0.43488	1	5587	5587		38.754	1.1537	1	190810			24821	4124	16388	16449	25160	25160					0.16033661939377453
LLTRTGGAY	9	Unmodified	_LLTRTGGAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.76824951171875	2	476.266542	950.51853	-0.1188	-5.6579E-05	-0.49322	-0.00023491	-0.61202	-0.00029148	476.26605465618024	33.171	0.26362	33.171	33.02	33.283	0					11	6	2	0	0	0	0.2873	1	12700	12700		51.335	3.4199	1	82772			24822	5566	16389	16450	25161	25161					0.04129187271757928
LLVATFPSSH	10	Unmodified	_LLVATFPSSH_					0	0	0			REV__SLC7A13|p.S332I|1|0.06|ENSG00000164893|chr8:86217654-86217654|C/A|missense_variant	REV__SLC7A13|p.S332I|1|0.06|ENSG00000164893|chr8:86217654-86217654|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.29443359375	2	536.295299	1070.57605	1.9212	0.0010303	-1.7393	-0.00093277	0.18195	9.7578E-05	536.2942768200987	42.325	0.12589	42.325	42.257	42.383	0					5	3	2	0	0	0	0.51121	1	16903	16903		44.117	5.3107	1	43309	+		24823	16010	16390	16451	25162	25162					0.043580294773164496
LLVIEARY	8	Unmodified	_LLVIEARY_					0	0	0			REV__CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant	REV__CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7946472167969	2	488.794935	975.575317	0.61442	0.00030033	-1.8847	-0.00092125	-1.2703	-0.00062092	488.79362778482783	40.631	0.32	40.631	40.441	40.761	0					18	13	2	0	0	0	0.6282	1	16016	16016		44.531	0	1	65434	+		24824	12385	16391	16452	25163	25163					0.0865523482827939
LLVKAYNH	8	Unmodified	_LLVKAYNH_					0	0	0			REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF	REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.27667236328125	2	479.279452	956.544351	-2.9272	-0.0014029	-1.3406	-0.0006425	-4.2677	-0.0020454	479.2785892176271	48.675	0.24894	48.675	48.565	48.814	0					24	15	2	0	0	0	0.70055	1	16153	16153		33.516	11.556	1	63502	+		24825	12143	16392	16453	25164	25164					0.06434081514032641
LLVKPLQN	8	Unmodified	_LLVKPLQN_					0	0	0			REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.7973937988281	2	462.797478	923.580402	-0.77437	-0.00035838	0.2008	9.2929E-05	-0.57357	-0.00026545	462.79749948528263	32.387	0.25971	32.387	32.186	32.446	0					18	11	2	0	0	0	0.60719	1	10763	10763		47.916	7.343	1	177900	+		24826	20490	16393	16454	25165	25165					0.11555538690902267
LLVLEGQA	8	Unmodified	_LLVLEGQA_					0	0	0		LRFN2|p.W640Lfs*15|1|0.41|ENSG00000156564|chr6:40392395-40392396|-/G|frameshift_variant;ENSG00000156564|ENST00000338305|LRFN2	LRFN2|p.W640Lfs*15|1|0.41|ENSG00000156564|chr6:40392395-40392396|-/G|frameshift_variant	LRFN2|p.W640Lfs*15|1|0.41|ENSG00000156564|chr6:40392395-40392396|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.75311279296875	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.211	1	50.211	49.711	50.711	0								0	0	0	1.7419	1	19832	19832		19.36	0	1				24827	5181	16394	16455	25166	25166					0.06383284011531032
LLVLPPTLGTP	11	Unmodified	_LLVLPPTLGTP_					0	0	0		ENST00000524819.5_1_11:62529062-62529592:+|nuORF	ENST00000524819.5_1_11:62529062-62529592:+|nuORF	ENST00000524819.5_1_11:62529062-62529592:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	374.2372131347656	3	374.237392	1119.69035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.625	1	36.625	36.125	37.125	0								0	0	0	0.45674	1	12401	12401		18.531	3.1979	1				24828	10351	16395	16456	25167	25167					0.13528919239411152
LLVNPLSFAF	10	Unmodified	_LLVNPLSFAF_					0	0	0			REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	374.2165832519531	3	374.21822	1119.63283	-1.0613	-0.00039717	-3.3159	-0.0012409	-4.3772	-0.001638	374.2171720115192	20.736	0.20592	20.736	20.555	20.761	0					8	6	2	0	0	0	0.72821	1	5845	5845		16.717	0.71061	1	74737	+		24829	16516	16396	16457	25168	25168					0.07780077033839916
LLVQPTGTNI	10	Unmodified	_LLVQPTGTNI_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3088989257812	2	528.308406	1054.60226	0.69214	0.00036566	0.30623	0.00016178	0.99836	0.00052744	528.3084874370708	35.876	0.36012	35.876	35.687	36.047	0					10	7	2	0	0	0	0.28036	1	13885	13885		69.628	2.134	1	488220	+		24830	17542	16397	16458	25169	25169					0.07714298648807016
LLVVAMIGSF	10	Unmodified	_LLVVAMIGSF_					0	0	0		OR4A5|p.G150S|1|0.21|ENSG00000221840|chr11:54707332-54707332|G/A|missense_variant	OR4A5|p.G150S|1|0.21|ENSG00000221840|chr11:54707332-54707332|G/A|missense_variant	OR4A5|p.G150S|1|0.21|ENSG00000221840|chr11:54707332-54707332|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.80712890625	2	525.306821	1048.59909	0.096077	5.047E-05	-1.2098	-0.00063554	-1.1138	-0.00058507	525.3061260416235	11.119	0.19196	11.119	11.017	11.209	0					15	10	2	0	0	0	0.75442	1	2116	2116		12.207	0	1	68261			24831	11878	16398	16459	25170	25170					0.07673332270451283
LLVVGEHT	8	Unmodified	_LLVVGEHT_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.2497253417969	2	434.25036	866.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.509	1	19.509	19.009	20.009	0								0	0	0	1.7419	1	5059	5059		21.702	1.2205	1				24832	7283	16399	16460	25171	25171					0.04758399868762808
LLWCLVLIQ	9	Unmodified	_LLWCLVLIQ_					0	0	0		sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1;sp|F5H9I4|US13_HCMVMMembraneproteinUS13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US13PE=3SV=1	sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.8327026367188	2	550.830463	1099.64637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.129	1	15.129	14.629	15.629	0								0	0	0	0.3693	1	3389	3389		12.959	0.14747	1				24833	22434	16400	16461	25172	25172					0.10053611541434293
LLWFFIIK	8	Unmodified	_LLWFFIIK_					0	0	0			REV__ENST00000083182.7_1_17:58533662-58538045:-|nuORF	REV__ENST00000083182.7_1_17:58533662-58538045:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.3380126953125	2	540.336239	1078.65792	3.4712	0.0018756	-0.43315	-0.00023405	3.0381	0.0016416	540.3361149423818	17.218	0.16918	17.218	17.107	17.276	0					5	3	2	0	0	0	0.7155	1	4941	4941		31.579	0	1	405750	+		24834	17860	16401	16462	25173	25173					0.12174176627081579
LLWKSPKR	8	Unmodified	_LLWKSPKR_					0	0	0			REV__NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	REV__NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.32177734375	2	514.324194	1026.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.537	1	28.537	28.037	29.037	0								0	0	0	1.7419	1	10467	10467		24.203	5.0992	1		+		24835	16059	16402	16463	25174	25174					0.1215833619339719
LLWQPWSST	9	Unmodified	_LLWQPWSST_					0	0	0			REV__ENST00000520678.1_1_8:43037358-43049067:+|nuORF	REV__ENST00000520678.1_1_8:43037358-43049067:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.7887573242188	2	559.287474	1116.5604	-0.80348	-0.00044937	4.1165	0.0023023	3.3131	0.0018529	559.7900635903566	23.084	0.3965	23.084	22.855	23.251	0					15	9	2	0	0	0	0.45358	1	6967	6967		37.159	7.3176	1	93072	+		24836	16020	16403	16464	25175	25175					0.0067774296028346726
LLYAYRYR	8	Unmodified	_LLYAYRYR_					0	0	0			REV__C8B|p.K161Nfs*19|1|0.34|ENSG00000021852|chr1:56954736-56954736|T/-|frameshift_variant	REV__C8B|p.K161Nfs*19|1|0.34|ENSG00000021852|chr1:56954736-56954736|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.2101135253906	3	373.209948	1116.60801	-2.108	-0.00078672	1.285	0.00047959	-0.82296	-0.00030714	373.21050441243807	29.436	0.70609	29.436	29.159	29.865	0					23	18	2	0	0	0	0.79176	1	9899	9899		17.365	0	1	45803	+		24837	12310	16404	16465	25176	25176					0.054374419511077576
LLYKKEGSS	9	Unmodified	_LLYKKEGSS_					0	0	0			REV__AFP|p.N348Kfs*10|1|0.39|ENSG00000081051|chr4:73447654-73447655|-/A|frameshift_variant	REV__AFP|p.N348Kfs*10|1|0.39|ENSG00000081051|chr4:73447654-73447655|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7872924804688	2	512.787307	1023.56006	0.55115	0.00028262	-0.41809	-0.00021439	0.13306	6.823E-05	512.7870485482558	18.164	0.16868	18.164	18.055	18.224	0					7	3	3	0	0	0	0.20551	1	5537	5537		60.972	4.2509	1	730200	+		24838	12103	16405	16466	25177	25177					0.0492232324043016
LLYLREMDH	9	Unmodified	_LLYLREMDH_					0	0	0			REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.3041381835938	2	595.305341	1188.59613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.163	1	31.163	30.663	31.663	0								0	0	0	0.30504	1	10698	10698		34.173	1.3601	1		+		24839	21840	16406	16467	25178	25178					0.00937457145641929
LLYPNPGPR	9	Unmodified	_LLYPNPGPR_					0	0	0			REV__ENST00000405142.1_1_16:4744898-4745177:+|nuORF	REV__ENST00000405142.1_1_16:4744898-4745177:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7894287109375	2	513.790184	1025.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.475	1	37.475	36.975	37.975	0								0	0	0	0.27025	1	12274	12274		33.516	0	1		+		24840	18966	16407	16468	25179	25179					0.05405466542742943
LLYSCPGLA	9	Unmodified	_LLYSCPGLA_					0	0	0			REV__ENSG00000230453|ENST00000684830|ANKRD18B	REV__ENSG00000230453|ENST00000684830|ANKRD18B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.747802734375	2	468.746596	935.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.48	1	27.48	26.98	27.98	0								0	0	0	0.29062	1	8473	8473		37.028	9.1462	1		+		24841	17642	16408	16469	25180	25180					0.008319242768152435
LMAAEVEQGG	10	Unmodified	_LMAAEVEQGG_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1;BAHCC1|p.H888Tfs*86|1|0.31|ENSG00000266074|chr17:81444812-81444812|C/-|frameshift_variant;BAHCC1|p.H888Pfs*186|1|0.24|ENSG00000266074|chr17:81444811-81444812|-/C|frameshift_variant;BAHCC1|p.G851Rfs*223|1|0.43|ENSG00000266074|chr17:81444699-81444700|-/C|frameshift_variant;BAHCC1|p.S1322Qfs*8|1|0.45|ENSG00000266074|chr17:81447736-81447737|-/C|frameshift_variant;BAHCC1|p.S1322Afs*42|1|0.44|ENSG00000266074|chr17:81447737-81447737|C/-|frameshift_variant;BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant;BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.73748779296875	2	502.739499	1003.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.336	1	30.336	29.836	30.836	0								0	0	0	0.23331	1	10927	10927		60.118	0.18749	1				24842	8071	16409	16470	25181	25181					-0.03714772942100808
LMAIPSHPGL	10	Unmodified	_LMAIPSHPGL_					0	0	0		ENST00000229795.7_2_6:36078082-36078130:+|nuORF	ENST00000229795.7_2_6:36078082-36078130:+|nuORF	ENST00000229795.7_2_6:36078082-36078130:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.288330078125	2	518.28642	1034.55829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.819	1	13.819	13.319	14.319	0								0	0	0	0.4201	1	3232	3232		23.042	3.6825	1				24843	8196	16410	16471	25182	25182					0.0423899095080742
LMAKAGQEELG	11	Unmodified	_LMAKAGQEELG_					0	0	0		PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant;PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant;nc|ENSG00000187642|Q5SV97-3|PERM1;ENSG00000187642|ENST00000433179|PERM1	PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant	PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.7950439453125	2	573.794806	1145.57506	-0.11747	-6.7406E-05	0.2154	0.0001236	0.097926	5.619E-05	573.7951034729682	29.691	0.2956	29.691	29.557	29.853	0					18	7	3	0	0	0	0.15477	1	10640	10640		79.713	2.395	1	555080			24844	11921	16411	16472	25183	25183					0.008094470461173842
LMALGWVAG	9	Unmodified	_LMALGWVAG_					0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.250244140625	2	459.249306	916.484059	4.2803	0.0019657	-2.3774	-0.0010918	1.903	0.00087393	459.2483976259541	22.113	0.14227	22.113	22.047	22.189	0					7	4	2	0	0	0	0.43174	1	6453	6453		39.021	3.4032	1	103720	+		24845	16422	16412	16473	25184	25184					0.0224764785930347
LMAQLDPLF	9	Unmodified	_LMAQLDPLF_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;ENST00000421582.2_2_9:35660480-35660645:+|nuORF	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.281494140625	2	524.280803	1046.54705	0.55646	0.00029174	-1.1052	-0.00057942	-0.5487	-0.00028768	524.2800700424694	34.189	0.30597	34.189	34.059	34.365	0					27	13	3	0	0	0	0.24095	1	11512	11512		56.721	0	1	285870			24846	5333	16413	16474	25185	25185					0.025641688566793164
LMAQLDPLF	9	Unmodified	_LMAQLDPLF_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;ENST00000421582.2_2_9:35660480-35660645:+|nuORF	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.284423828125	2	524.280803	1046.54705	1.7836	0.00093512	-0.70434	-0.00036927	1.0793	0.00056585	524.2805742506533	34.384	0.41071	34.384	34.213	34.624	0					28	10	3	0	0	0	0.1115	1	13234	13234		76.774	13.468	1	1584100			24847	5333	16413	16474	25186	25186					0.025641688566793164
LMAQLDPLF	9	Unmodified	_LMAQLDPLF_					0	0	0		nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107;ENST00000421582.2_2_9:35660480-35660645:+|nuORF	nc|ENSG00000159884|Q8WV48-3|CCDC107	nc|ENSG00000159884|Q8WV48-3|CCDC107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2841186523438	2	524.280803	1046.54705	1.6263	0.00085263	0.55216	0.00028949	2.1784	0.0011421	524.2810774609944	34.335	0.5534	34.335	34.18	34.734	0					26	11	3	0	0	0	0.027316	1	13138	13138		111.65	23.894	1	2341100			24848	5333	16413	16474	25187	25187					0.025641688566793164
LMCRGKVF	8	Unmodified	_LMCRGKVF_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2581787109375	2	477.256608	952.498663	2.2378	0.001068	1.1616	0.00055437	3.3993	0.0016224	477.2571992122838	47.667	0.22478	47.667	47.591	47.815	0					25	12	3	0	0	0	0.6282	1	19002	19002		44.531	44.531	1	203650	+		24849	14971	16414	16475	25188	25188					0.02051396735794242
LMDARSNVL	9	Unmodified	_LMDARSNVL_					0	0	0		tr|U7SWP6|U7SWP6_FUSNUMembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01126PE=4SV=1	tr|U7SWP6|U7SWP6_FUSNUMembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01126PE=4SV=1	tr|U7SWP6|U7SWP6_FUSNUMembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01126PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7747802734375	2	509.771134	1017.52771	3.9613	0.0020193	2.4753	0.0012618	6.4365	0.0032812	509.77219445402784	19.464	0.11526	19.464	19.39	19.505	0					6	3	2	0	0	0	0.11898	1	5268	5268		58.782	0	1	103660			24850	22857	16415	16476	25189	25189					0.019652125657898978
LMDLFSVK	8	Unmodified	_LMDLFSVK_					0	0	0		COL22A1|p.I680Nfs*21|1|0.2|ENSG00000169436|chr8:138751504-138751505|-/T|frameshift_variant;nc|ENSG00000169436|Q8NFW1-3|COL22A1;COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1	COL22A1|p.I680Nfs*21|1|0.2|ENSG00000169436|chr8:138751504-138751505|-/T|frameshift_variant	COL22A1|p.I680Nfs*21|1|0.2|ENSG00000169436|chr8:138751504-138751505|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7624816894531	2	476.762246	951.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.626	1	43.626	43.126	44.126	0								0	0	0	1.7419	1	17049	17049		63.306	5.495	1				24851	603	16416	16477	25190	25190					0.03224497310930019
LMEKQREIE	9	Unmodified	_LMEKQREIE_					0	0	0			REV__nc|ENSG00000131323|Q13114-2|TRAF3	REV__nc|ENSG00000131323|Q13114-2|TRAF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	588.8087158203125	2	588.308081	1174.60161	0.20035	0.00011787	-0.27077	-0.00015929	-0.070414	-4.1425E-05	588.8093356085141	28.292	0.066177	28.292	28.24	28.306	0					4	2	2	0	0	0	0.38666	1	8818	8818		44.117	12.162	1	48050	+		24852	14616	16417	16478	25191	25191					0.02129135937434512
LMFVKSGQY	9	Unmodified	_LMFVKSGQY_					0	0	0		nc|nan|A0A1B0GVB3-2|C7orf78;ENSG00000226690|ENST00000636804|unknown	nc|nan|A0A1B0GVB3-2|C7orf78	nc|nan|A0A1B0GVB3-2|C7orf78	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7811889648438	2	536.778428	1071.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.593	1	34.593	34.093	35.093	0								0	0	0	0.21054	1	13274	13274		49.442	1.5259	1				24853	7877	16418	16479	25192	25192					0.009392847139224614
LMGLWSVAL	9	Unmodified	_LMGLWSVAL_					0	0	0		WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant	WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant	WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2793884277344	2	495.278063	988.541574	-0.063892	-3.1644E-05	2.5059	0.0012411	2.442	0.0012095	495.2791457315467	31.354	0.17583	31.354	31.27	31.446	0					11	7	3	0	0	0	0.41354	1	10058	10058		40.573	0	1	65702			24854	23110	16419	16480	25193	25193					0.0468449006488072
LMHALVIGVH	10	Unmodified	_LMHALVIGVH_					0	0	0			REV__nc|ENSG00000138780|Q8NEC7-3|GSTCD	REV__nc|ENSG00000138780|Q8NEC7-3|GSTCD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3174438476562	2	545.315512	1088.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.59	1	50.59	50.09	51.09	0								0	0	0	0.4201	1	19928	19928		19.36	0.25645	1		+		24855	15003	16420	16481	25194	25194					0.07570672596102668
LMHMQLKF	8	Unmodified	_LMHMQLKF_					0	0	0			REV__ENSG00000157600|ENST00000372068|TMEM164	REV__ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2772216796875	2	524.277541	1046.54053	0.5146	0.00026979	-0.73204	-0.00038379	-0.21744	-0.000114	524.2769301878465	37.098	0.16357	37.098	37.023	37.187	0					5	3	2	0	0	0	0.57802	1	14502	14502		52.299	4.6418	1	68181	+		24856	15661	16421	16482	25195	25195					0.019119524243251362
LMHRGTAICY	10	Carbamidomethyl (C)	_LMHRGTAIC(Carbamidomethyl (C))Y_	LMHRGTAIC(1)Y		LMHRGTAIC(49)Y		0	1	0			REV__ENSG00000157796|ENST00000399820|WDR19	REV__ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.296142578125	2	611.296993	1220.57943	0.45597	0.00027873	-0.90982	-0.00055617	-0.45386	-0.00027744	611.296461042128	34.849	0.21538	34.849	34.783	34.998	0					11	6	2	0	0	0	0.46215	1	13460	13460		49.442	11.63	1	129630	+		24857	15669	16422	16483	25196	25196	570				-0.02203367011975388
LMHSLSQRCE	10	Oxidation (M)	_LM(Oxidation (M))HSLSQRCE_		LM(1)HSLSQRCE		LM(55)HSLSQRCE	0	0	1			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.2818603515625	2	610.28154	1218.54853	-0.72137	-0.00044024	0.57431	0.00035049	-0.14706	-8.9746E-05	610.2819513004542	20.233	0.197	20.233	20.142	20.339	0					9	4	3	0	0	0	0.41335	1	6259	6259		54.776	11.912	1	432100	+		24858	14538	16423	16484	25197	25197		551			-0.052005651168656186
LMIFNAQLG	9	Oxidation (M)	_LM(Oxidation (M))IFNAQLG_		LM(1)IFNAQLG		LM(41)IFNAQLG	0	0	1			REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.76885986328125	2	511.770603	1021.52665	-1.7324	-0.00088661	-2.0446	-0.0010464	-3.777	-0.001933	511.76937341032806	13.95	0.094551	13.95	13.892	13.986	0					9	4	3	0	0	0	0.41354	1	2864	2864		40.573	9.0428	1	166380	+		24859	22049	16424	16485	25198	25198		798			0.016749981968928296
LMIGTGTVTR	10	Oxidation (M)	_LM(Oxidation (M))IGTGTVTR_		LM(1)IGTGTVTR		LM(70)IGTGTVTR	0	0	1		ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7913208007812	2	532.792066	1063.56958	-1.2852	-0.00068474	-1.0964	-0.00058416	-2.3816	-0.0012689	532.7915104378911	36.578	0.29433	36.578	36.43	36.724	0					30	14	3	0	0	0	0.28036	1	13080	13080		69.628	12.907	1	267730			24860	5693	16425	16486	25199	25199		232			0.040337682542940456
LMINSSQFSK	10	Unmodified	_LMINSSQFSK_					0	0	0		ZNF224|p.K426Nfs*47|1|0.38|ENSG00000267680|chr19:44107434-44107434|A/-|frameshift_variant;ENST00000591551.1_1_19:44610541-44612434:+|nuORF;ENSG00000267680|ENST00000693561|ZNF224	ZNF224|p.K426Nfs*47|1|0.38|ENSG00000267680|chr19:44107434-44107434|A/-|frameshift_variant	ZNF224|p.K426Nfs*47|1|0.38|ENSG00000267680|chr19:44107434-44107434|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.7976684570312	2	577.797349	1153.58014	1.714	0.00099032	-1.7135	-0.00099007	0.00043587	2.5184E-07	577.7966912252892	39.43	0.24272	39.43	39.332	39.575	0					8	5	2	0	0	0	0.50881	1	15597	15597		44.377	0	1	273180			24861	8076	16426	16487	25200	25200					0.00949750908716851
LMIWKLNV	8	Unmodified	_LMIWKLNV_					0	0	0		ENST00000369577.7_1_6:87964485-87964521:+|nuORF	ENST00000369577.7_1_6:87964485-87964521:+|nuORF	ENST00000369577.7_1_6:87964485-87964521:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.8034362792969	2	508.801706	1015.58886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.601	1	28.601	28.101	29.101	0								0	0	0	1.7419	1	9514	9514		42.474	18.272	1				24862	8944	16427	16488	25201	25201					0.08168769335873094
LMKRIAMSN	9	Unmodified	_LMKRIAMSN_					0	0	0			REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2930908203125	2	532.291179	1062.56781	1.713	0.00091182	1.4922	0.00079428	3.2052	0.0017061	532.2919761637454	33.734	0.45092	33.734	33.561	34.012	0					20	11	2	0	0	0	0.39215	1	12903	12903		42.396	0.96952	1	1210200	+		24863	21974	16428	16489	25202	25202					0.03902435964710094
LMKRLRNIM	9	Unmodified	_LMKRLRNIM_					0	0	0		ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.8511962890625	2	587.849196	1173.68384	3.1916	0.0018762	-0.32234	-0.00018949	2.8692	0.0016867	587.8489462293464	41.085	0.22629	41.085	40.959	41.186	0					13	5	3	0	0	0	0.13519	1	16311	16311		71.296	4.3338	1	267330			24864	7485	16429	16490	25203	25203					0.10394379535387088
LMKVGHPHCS	10	Oxidation (M)	_LM(Oxidation (M))KVGHPHCS_		LM(1)KVGHPHCS		LM(85)KVGHPHCS	0	0	1			REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7708129882812	2	562.770611	1123.52667	1.7672	0.00099455	-0.067198	-3.7817E-05	1.7	0.00095674	562.7698184123695	26.356	0.62088	26.356	25.932	26.553	0					24	8	4	0	0	0	0.16018	1	9332	9332		84.916	6.6517	1	810460	+		24865	15983	16430	16491	25204	25204		612			-0.03015325074784414
LMKVMKTK	8	Oxidation (M)	_LM(Oxidation (M))KVMKTK_		LM(0.996)KVM(0.004)KTK		LM(24)KVM(-24)KTK	0	0	1		CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.79290771484375	2	497.793023	993.571494	0.80454	0.00040049	-0.59414	-0.00029576	0.2104	0.00010473	497.79270646368826	14.324	0.47969	14.324	14.167	14.646	0					24	10	4	0	0	0	0.54629	1	3677	3677		55.504	55.504	2	1044400			24866	472	16431	16492	25205	25205		25			0.07445105738565871
LMKVMKTK	8	Oxidation (M)	_LM(Oxidation (M))KVMKTK_		LM(0.969)KVM(0.031)KTK		LM(15)KVM(-15)KTK	0	0	1		CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.79327392578125	2	497.793023	993.571494	1.0142	0.00050485	-0.972	-0.00048386	0.042181	2.0997E-05	497.79254844233634	14.299	0.47162	14.299	14.188	14.66	0					22	9	4	0	0	0	0.54629	1	3511	3511		55.504	55.504	2	978780			24867	472	16431	16492	25206	25206		25			0.07445105738565871
LMKVQEST	8	Oxidation (M)	_LM(Oxidation (M))KVQEST_		LM(1)KVQEST		LM(74)KVQEST	0	0	1			REV__KHK|p.A143T|1|0.17|ENSG00000138030|chr2:27097512-27097512|G/A|missense_variant	REV__KHK|p.A143T|1|0.17|ENSG00000138030|chr2:27097512-27097512|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2480773925781	2	476.244418	950.474282	2.2702	0.0010811	3.0261	0.0014412	5.2963	0.0025223	476.24690199173784	19.919	0.16975	19.919	19.808	19.978	0					10	3	4	0	0	0	0.37378	1	6250	6250		73.975	7.5455	1	1485700	+		24868	20781	16432	16493	25207	25207		742			-0.0029358493674180863
LMLAVYYDS	9	Unmodified	_LMLAVYYDS_					0	0	0		ENST00000432432.6_1_2:95480778-95522914:-|nuORF;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;ENST00000427650.2_1_9:69386004-69400453:+|nuORF;nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENSG00000260691|ENST00000562196|ANKRD20A1	ENST00000432432.6_1_2:95480778-95522914:-|nuORF;nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	ENST00000432432.6_1_2:95480778-95522914:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7620239257812	2	537.762443	1073.51033	0.29594	0.00015914	-1.5898	-0.00085496	-1.2939	-0.00069581	537.7615978984369	33.795	0.29422	33.795	33.702	33.997	0					20	7	4	0	0	0	0.5392	1	12952	12952		28.254	4.0515	1	1821000			24869	9509;8043	16433	16494	25208	25208					-0.023481277599103123
LMLEAAYKL	9	Unmodified	_LMLEAAYKL_					0	0	0		nc|ENSG00000286920|Q5STR5|SMIM40	nc|ENSG00000286920|Q5STR5|SMIM40	nc|ENSG00000286920|Q5STR5|SMIM40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2952880859375	2	526.296453	1050.57835	0.099936	5.2596E-05	-0.19461	-0.00010243	-0.094679	-4.9829E-05	526.2967739512776	48.037	0.14989	48.037	47.962	48.112	0					11	9	2	0	0	0	0.34452	1	17530	17530		39.253	6.4404	1	56606			24870	11823	16434	16495	25209	25209					0.055087418907760366
LMLGCFQLQEL	11	Unmodified	_LMLGCFQLQEL_					0	0	0		nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8	nc|ENSG00000074855|Q9HCE9-2|ANO8	nc|ENSG00000074855|Q9HCE9-2|ANO8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.2222595214844	3	432.222648	1293.64612	0.17842	7.7119E-05	-1.0748	-0.00046457	-0.89642	-0.00038745	432.22220459701856	28.126	0.24327	28.126	28.039	28.282	0					19	8	3	0	0	0	0.7098	1	8739	8739		23.378	0	1	301500			24871	1532	16435	16496	25210	25210					0.011038237592856603
LMLHNEDGI	9	Unmodified	_LMLHNEDGI_					0	0	0			REV__ENSG00000077943|ENST00000378076|ITGA8	REV__ENSG00000077943|ENST00000378076|ITGA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2554931640625	2	521.255317	1040.49608	0.075969	3.9599E-05	-0.24859	-0.00012958	-0.17262	-8.998E-05	521.2553657761139	34.14	1.3569	34.14	33.987	35.344	0					80	35	4	0	0	0	0.26904	1	12824	12824		53.351	3.8154	1	3134400	+		24872	13267	16436	16497	25211	25211					-0.022547801881728446
LMLSEVMKL	9	Unmodified	_LMLSEVMKL_					0	0	0		RHPN2|p.T570M|1|0.35|ENSG00000131941|chr19:32990605-32990605|G/A|missense_variant	RHPN2|p.T570M|1|0.35|ENSG00000131941|chr19:32990605-32990605|G/A|missense_variant	RHPN2|p.T570M|1|0.35|ENSG00000131941|chr19:32990605-32990605|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2988891601562	2	532.298139	1062.58172	-1.2656	-0.00067367	3.1499	0.0016767	1.8843	0.001003	532.2996961045642	26.421	0.27573	26.421	26.319	26.595	0					8	6	2	0	0	0	0.30951	1	8496	8496		49.442	8.8689	1	90742			24873	22344	16437	16498	25212	25212					0.05293668673130014
LMMALVVL	8	2 Oxidation (M)	_LM(Oxidation (M))M(Oxidation (M))ALVVL_		LM(1)M(1)ALVVL		LM(44)M(44)ALVVL	0	0	2		ENSG00000228083|ENST00000380222|IFNA14	ENSG00000228083|ENST00000380222|IFNA14	ENSG00000228083|ENST00000380222|IFNA14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2608642578125	2	461.261025	920.507497	0.77828	0.00035899	-0.9832	-0.00045351	-0.20492	-9.452E-05	461.2605836855973	31.616	0.38032	31.616	31.49	31.871	0					21	9	3	0	0	0	0.63381	1	11520	11520		43.626	43.626	1	1142700			24874	7885	16438	16499	25213	25213		318;319			0.044063255816013225
LMMGWIFGFT	10	Unmodified	_LMMGWIFGFT_					0	0	0			REV__MGAT5|p.F186Lfs*43|1|0.37|ENSG00000152127|chr2:134318718-134318718|T/-|frameshift_variant	REV__MGAT5|p.F186Lfs*43|1|0.37|ENSG00000152127|chr2:134318718-134318718|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.7886352539062	2	601.790481	1201.56641	-0.24149	-0.00014533	-3.1125	-0.0018731	-3.354	-0.0020184	601.789530099446	38.469	0.1478	38.469	38.382	38.53	0					7	4	2	0	0	0	0.64178	1	14622	14622		29.15	1.0681	1	54587	+		24875	15497	16439	16500	25214	25214					-0.02631198124072398
LMMMSVNEK	9	2 Oxidation (M)	_LM(Oxidation (M))MM(Oxidation (M))SVNEK_		LM(0.99)M(0.013)M(0.997)SVNEK		LM(20)M(-20)M(25)SVNEK	0	0	2			REV__TOPAZ1|p.K985Sfs*8|1|0.12|ENSG00000173769|chr3:44256274-44256274|A/-|frameshift_variant	REV__TOPAZ1|p.K985Sfs*8|1|0.12|ENSG00000173769|chr3:44256274-44256274|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7536010742188	2	557.750695	1113.48684	3.4805	0.0019413	1.0222	0.00057014	4.5028	0.0025114	557.7516463795467	31.594	0.41602	31.594	31.386	31.802	0					19	8	3	0	0	0	0.16524	1	11842	11842		65.803	9.0821	3	501230	+		24876	16531	16440	16501	25215	25215		631;632			-0.06536632860365899
LMNSWPFGDVL	11	Unmodified	_LMNSWPFGDVL_					0	0	0		nc|ENSG00000082556|P41145-2|OPRK1;OPRK1|p.S301Nfs*23|1|0.05|ENSG00000082556|chr8:53229537-53229538|GC/-|frameshift_variant;ENSG00000082556|ENST00000265572|OPRK1	nc|ENSG00000082556|P41145-2|OPRK1	nc|ENSG00000082556|P41145-2|OPRK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.8765563964844	3	426.877758	1277.61144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.295	1	25.295	24.795	25.795	0								0	0	0	0.45344	1	8961	8961		25.126	1.6033	1				24877	1680	16441	16502	25216	25216					-0.01625676057187775
LMPLCLWIY	9	Unmodified	_LMPLCLWIY_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3023071289062	2	576.303224	1150.5919	-0.14564	-8.3932E-05	-1.4752	-0.00085019	-1.6209	-0.00093412	576.3026439048236	12.708	0.1042	12.708	12.638	12.742	0					12	6	2	0	0	0	0.61124	1	2528	2528		14.664	3.7985	1	104240			24878	4663	16442	16503	25217	25217					0.022622763983690675
LMPRCNGKL	9	Unmodified	_LMPRCNGKL_					0	0	0			REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2798461914062	2	516.278072	1030.54159	3.2823	0.0016946	-0.35062	-0.00018102	2.9317	0.0015136	516.2780639588092	37.391	0.3565	37.391	37.285	37.642	0					16	7	4	0	0	0	0.14603	1	14626	14626		68.787	4.5796	1	552170	+		24879	19310	16443	16504	25218	25218					0.02754166793215518
LMRKLGLKTGT	11	Unmodified	_LMRKLGLKTGT_					0	0	0		STAB2|p.F1633Lfs*22|1|0.36|ENSG00000136011|chr12:103727310-103727310|T/-|frameshift_variant	STAB2|p.F1633Lfs*22|1|0.36|ENSG00000136011|chr12:103727310-103727310|T/-|frameshift_variant	STAB2|p.F1633Lfs*22|1|0.36|ENSG00000136011|chr12:103727310-103727310|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.5870361328125	3	406.584797	1216.73256	3.4416	0.0013993	1.5236	0.00061948	4.9652	0.0020188	406.58549984947507	19.663	0.13453	19.663	19.562	19.697	0					9	4	3	0	0	0	0.4771	1	5360	5360		45.908	6.035	1	509010			24880	22493	16444	16505	25219	25219					0.13286571376124812
LMTKKTSKA	9	Unmodified	_LMTKKTSKA_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5341491699219	3	336.535444	1006.5845	-1.9124	-0.00064359	-1.4175	-0.00047702	-3.3299	-0.0011206	336.53496927300114	25.121	1.4502	25.121	24.455	25.905	0					52	32	2	0	0	0	0.61124	1	7782	7782		16.717	1.8525	1	142780	+		24881	13486	16445	16506	25220	25220					0.081472601222913
LMTKKTSKA	9	Unmodified	_LMTKKTSKA_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5343017578125	3	336.535444	1006.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.232	1	48.232	47.732	48.732	0								0	0	0	0.39362	1	16043	16043		12.812	2.2249	1		+		24882	13486	16445	16506	25221	25221					0.081472601222913
LMVGQSPSAPS	11	Unmodified	_LMVGQSPSAPS_					0	0	0			REV__nc|ENSG00000104081|Q96LC9-3|BMF	REV__nc|ENSG00000104081|Q96LC9-3|BMF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.269287109375	2	537.268424	1072.5223	2.0994	0.0011279	-0.33538	-0.00018019	1.764	0.00094775	537.2681918145472	39.14	1.9396	39.14	38.312	40.251	0					175	73	3	0	0	0	0.53842	1	15084	15084		41.427	2.1738	1	496210	+		24883	13709	16446	16507	25222	25222					-0.011065110167010062
LMVLDFVK	8	Oxidation (M)	_LM(Oxidation (M))VLDFVK_		LM(1)VLDFVK		LM(45)VLDFVK	0	0	1			REV__FANCD2|p.H377Y|1|0.27|ENSG00000144554|chr3:10043859-10043859|C/T|missense_variant	REV__FANCD2|p.H377Y|1|0.27|ENSG00000144554|chr3:10043859-10043859|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.77984619140625	2	490.777896	979.54124	3.482	0.0017089	0.81238	0.0003987	4.2944	0.0021076	490.77834218360357	18.506	0.13443	18.506	18.448	18.582	0					7	4	2	0	0	0	0.6282	1	4842	4842		44.531	44.531	1	218930	+		24884	15235	16447	16508	25223	25223		582			0.05065070345028744
LMVMVLLAGA	10	Unmodified	_LMVMVLLAGA_					0	0	0		ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2943115234375	2	509.295399	1016.57624	-0.51362	-0.00026159	0.28846	0.00014691	-0.22517	-0.00011468	509.29535268747316	38.107	0.15237	38.107	38.003	38.155	0					16	8	2	0	0	0	0.50739	1	12839	12839		44.531	0	1	110950			24885	7023	16448	16509	25224	25224					0.06861989881326735
LMVSNAMRFM	10	Oxidation (M)	_LMVSNAMRFM(Oxidation (M))_		LMVSNAM(0.17)RFM(0.83)		LM(-44)VSNAM(-6.9)RFM(6.9)	0	0	1			REV__ENST00000506123.5_1_5:54461320-54461404:+|nuORF	REV__ENST00000506123.5_1_5:54461320-54461404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.2874755859375	2	608.287779	1214.56101	-0.61663	-0.00037509	0.51573	0.00031372	-0.1009	-6.1375E-05	608.2879533330012	36.877	0.1992	36.877	36.776	36.975	0					8	5	2	0	0	0	0.47859	1	13943	13943		47.657	11.211	3	120840	+		24886	19838	16449	16510	25225	25225		724			-0.03769244978207098
LMVYPDELI	9	Oxidation (M)	_LM(Oxidation (M))VYPDELI_		LM(1)VYPDELI		LM(56)VYPDELI	0	0	1			REV__ENST00000481559.6_1_5:152869375-153085697:+|nuORF	REV__ENST00000481559.6_1_5:152869375-153085697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7849731445312	2	554.783376	1107.5522	0.59835	0.00033196	2.9788	0.0016526	3.5772	0.0019845	554.7848028636722	37.241	0.22728	37.241	37.131	37.358	0					11	6	2	0	0	0	0.25109	1	14119	14119		55.504	13.03	1	74111	+		24887	15599	16450	16511	25226	25226		599			0.0027242792864399235
LNAALGTI	8	Unmodified	_LNAALGTI_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.73162841796875	2	386.731803	771.449054	0.44346	0.0001715	-0.35111	-0.00013579	0.092344	3.5712E-05	386.7316082288692	24.444	0.51408	24.444	24.079	24.593	0					24	10	4	0	0	0	0.29152	1	8494	8494		85.359	3.0545	1	387390	+		24888	14120	16451	16512	25227	25227					0.054187283229907734
LNAHEYAL	8	Unmodified	_LNAHEYAL_					0	0	0		tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1	tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1	tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.73712158203125	2	465.737617	929.460681	0.18262	8.5052E-05	-0.70534	-0.0003285	-0.52272	-0.00024345	465.73714726040254	30.633	0.23415	30.633	30.537	30.771	0					7	5	2	0	0	0	0.41952	1	11077	11077		68.485	2.6815	1	219280			24889	22821	16452	16513	25228	25228					-0.006870746536719707
LNAKTPQLG	9	Unmodified	_LNAKTPQLG_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.776611328125	2	471.274367	940.53418	-0.42036	-0.0001981	0.25504	0.00012019	-0.16532	-7.7909E-05	471.27442312883016	30.482	0.35712	30.482	30.414	30.771	0					24	14	2	0	0	0	0.41113	1	9783	9783		40.778	0.20554	1	91509	+		24890	14084	16453	16514	25229	25229					0.0615347378881097
LNAVENYEHTQ	11	Unmodified	_LNAVENYEHTQ_					0	0	0			REV__nc|ENSG00000111224|Q9NR21-2|PARP11	REV__nc|ENSG00000111224|Q9NR21-2|PARP11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	659.3070068359375	2	659.307123	1316.59969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.752	1	25.752	25.252	26.252	0								0	0	0	0.14788	1	9178	9178		68.846	8.7279	1		+		24891	13958	16454	16515	25230	25230					-0.045942015468199315
LNAYSNLSL	9	Unmodified	_LNAYSNLSL_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7650146484375	2	497.763832	993.513111	-2.2669	-0.0011284	3.3501	0.0016676	1.0832	0.00053918	497.765666730998	42.978	0.073242	42.978	42.951	43.024	0					5	4	2	0	0	0	0.30951	1	14955	14955		49.442	5.3247	1	42370			24892	4874	16455	16516	25231	25231					0.01609463689283075
LNCSVDKRL	9	Unmodified	_LNCSVDKRL_					0	0	0			REV__ENSG00000205693|ENST00000381273|MANSC4	REV__ENSG00000205693|ENST00000381273|MANSC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.28759765625	2	524.284408	1046.55426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.591	1	41.591	41.091	42.091	0								0	0	0	0.24544	1	16554	16554		44.377	5.1244	1		+		24893	17533	16456	16517	25232	25232					0.03284901457118394
LNDTARIY	8	Unmodified	_LNDTARIY_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2560119628906	2	483.256174	964.497795	-0.59727	-0.00028863	1.5409	0.00074467	0.94367	0.00045603	483.2574374357428	28.323	0.71431	28.323	27.712	28.426	0					40	14	5	0	0	0	0.41701	1	10256	10256		68.787	5.4806	1	1428300			24894	2942	16457	16518	25233	25233					0.014125968920893683
LNELVSQLFG	10	Unmodified	_LNELVSQLFG_					0	0	0			REV__PSMD4|p.E333G|1|0.15|ENSG00000159352|chr1:151267207-151267207|A/G|missense_variant	REV__PSMD4|p.E333G|1|0.15|ENSG00000159352|chr1:151267207-151267207|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.3069458007812	2	560.305864	1118.59717	1.7944	0.0010054	0.13218	7.406E-05	1.9266	0.0010795	560.3059311214586	42.095	0.22601	42.095	41.984	42.21	0					22	11	3	0	0	0	0.36432	1	15960	15960		56.434	0	1	190640	+		24895	21421	16458	16519	25234	25234					0.0426199478615672
LNFIYQKE	8	Unmodified	_LNFIYQKE_					0	0	0		POLR1B|p.R241Q|1|0.14|ENSG00000125630|chr2:112550962-112550962|G/A|missense_variant	POLR1B|p.R241Q|1|0.14|ENSG00000125630|chr2:112550962-112550962|G/A|missense_variant	POLR1B|p.R241Q|1|0.14|ENSG00000125630|chr2:112550962-112550962|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7833862304688	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.005	1	17.005	16.505	17.505	0								0	0	0	1.7419	1	4177	4177		24.203	1.1603	1				24896	11949	16459	16520	25235	25235					0.024863405860060084
LNFKKGWM	8	Unmodified	_LNFKKGWM_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2745361328125	2	512.275855	1022.53716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.929	1	31.929	31.429	32.429	0								0	0	0	1.7419	1	10620	10620		25.45	3.7478	1				24897	1973	16460	16521	25236	25236					0.026790256419758407
LNFQGTLTED	10	Unmodified	_LNFQGTLTED_					0	0	0			REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2755737304688	2	569.274761	1136.53497	0.17745	0.00010102	0.90559	0.00051553	1.083	0.00061654	569.2755720234308	26.551	0.16751	26.551	26.443	26.611	0					9	3	3	0	0	0	0.22691	1	9508	9508		54.776	3.4409	1	380180	+		24898	20525	16461	16522	25237	25237					-0.027837763527941206
LNFQKLIK	8	Unmodified	_LNFQKLIK_					0	0	0			REV__tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	REV__tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.3185729980469	2	502.318577	1002.6226	-0.91937	-0.00046182	0.90677	0.00045549	-0.012601	-6.3295E-06	502.31901737820937	31.846	0.17825	31.846	31.762	31.94	0					15	7	3	0	0	0	0.72381	1	10581	10581		20.482	2.1574	1	100440	+		24899	21768	16462	16523	25238	25238					0.12139514099294502
LNGIQGLNLY	10	Unmodified	_LNGIQGLNLY_					0	0	0			REV__nc|ENSG00000140479|P29122-3|PCSK6	REV__nc|ENSG00000140479|P29122-3|PCSK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.8052368164062	2	552.806031	1103.59751	1.1438	0.00063232	-1.4577	-0.00080583	-0.31388	-0.00017351	552.8050636458718	37.054	0.14106	37.054	36.996	37.137	0					8	6	2	0	0	0	0.60281	1	13264	13264		21.96	0	1	85596	+		24900	15077	16463	16524	25239	25239					0.04985414506040797
LNGKFIRR	8	Unmodified	_LNGKFIRR_					0	0	0			REV__SMIM21|p.G28R|1|0.31|ENSG00000206026|chr18:75427482-75427482|C/T|missense_variant	REV__SMIM21|p.G28R|1|0.31|ENSG00000206026|chr18:75427482-75427482|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3122863769531	2	502.311618	1002.60868	2.9264	0.00147	-0.6869	-0.00034504	2.2395	0.001125	502.3113080505765	44.833	0.71735	44.833	44.522	45.239	0					67	30	3	0	0	0	0.68754	1	17867	17867		35.201	1.6851	1	257550	+		24901	21546	16464	16525	25240	25240					0.10748281390851844
LNGVFVSR	8	Unmodified	_LNGVFVSR_					0	0	0			REV__ENST00000495224.1_1_1:235295030-235299397:-|nuORF	REV__ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.2562561035156	2	446.255977	890.497401	-0.15589	-6.9566E-05	-0.34275	-0.00015296	-0.49864	-0.00022252	446.2558058776564	31.004	0.5049	31.004	30.909	31.414	0					37	11	4	0	0	0	0.7126	1	11804	11804		31.955	0	1	4471400	+		24902	17189	16465	16526	25241	25241					0.04777221962899603
LNHLEPPVKH	10	Unmodified	_LNHLEPPVKH_					0	0	0		NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant;ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4	NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant	NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.3306884765625	2	592.332747	1182.65094	-1.7891	-0.0010597	-1.5074	-0.00089287	-3.2965	-0.0019526	592.3316519789446	16.591	0.092432	16.591	16.543	16.636	0					6	2	3	0	0	0	0.39647	1	3976	3976		62.107	3.8775	1	224480			24903	6895	16466	16527	25242	25242					0.06692212008556453
LNHLGEFSH	9	Unmodified	_LNHLGEFSH_					0	0	0			REV__nc|ENSG00000133067|Q9HBX8-2|LGR6	REV__nc|ENSG00000133067|Q9HBX8-2|LGR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2581176757812	2	527.259248	1052.50394	-1.2059	-0.00063582	-0.46702	-0.00024624	-1.6729	-0.00088206	527.2589757072602	32.078	0.12204	32.078	32.018	32.14	0					5	3	2	0	0	0	0.24095	1	11125	11125		56.721	3.3696	1	56334	+		24904	14694	16467	16528	25243	25243					-0.02020884876378659
LNHRGLWV	8	Unmodified	_LNHRGLWV_					0	0	0			REV__ENST00000595316.5_1_19:51376719-51380013:+|nuORF	REV__ENST00000595316.5_1_19:51376719-51380013:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7821960449219	2	497.782693	993.550834	0.5592	0.00027836	-1.3382	-0.00066615	-0.77904	-0.00038779	497.78191263607334	20.456	0.15396	20.456	20.356	20.51	0					5	3	2	0	0	0	0.64096	1	6359	6359		42.474	1.6963	1	129390	+		24905	16214	16468	16529	25244	25244					0.053800194654286315
LNIFDVIKN	9	Unmodified	_LNIFDVIKN_					0	0	0			REV__tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	REV__tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.3113403320312	2	538.310949	1074.60735	0.23365	0.00012577	0.37439	0.00020154	0.60804	0.00032732	538.3112620724231	33.256	0.53421	33.256	33.046	33.58	0					31	14	3	0	0	0	0.22377	1	12239	12239		58.782	4.0056	1	444400	+		24906	21761	16469	16530	25245	25245					0.0730260251141317
LNIHNEEF	8	Unmodified	_LNIHNEEF_					0	0	0		nc|ENSG00000148143|Q96JM2-2|ZNF462;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	nc|ENSG00000148143|Q96JM2-2|ZNF462	nc|ENSG00000148143|Q96JM2-2|ZNF462	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2451477050781	2	508.245806	1014.47706	-0.58479	-0.00029721	0.80272	0.00040798	0.21794	0.00011076	508.2461127583535	28.131	0.25484	28.131	28.014	28.269	0					16	9	2	0	0	0	0.66372	1	9023	9023		38.806	0	1	159080			24907	4811	16470	16531	25246	25246					-0.029599934875591316
LNIINQAWF	9	Unmodified	_LNIINQAWF_					0	0	0			REV__TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant	REV__TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.8038330078125	2	559.803291	1117.59203	0.12408	6.946E-05	0.89541	0.00050126	1.0195	0.00057072	559.8036194230923	31.193	0.34772	31.193	31.059	31.407	0					28	13	3	0	0	0	0.45358	1	10324	10324		37.159	2.9866	1	276050	+		24908	14344	16471	16532	25247	25247					0.03793735714225477
LNINEDTETS	10	Unmodified	_LNINEDTETS_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;ABCA13|p.H2188Ifs*3|1|0.11|ENSG00000179869|chr7:48276226-48276226|C/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.26025390625	2	568.259308	1134.50406	1.7607	0.0010005	-0.19927	-0.00011324	1.5614	0.00088728	568.2591897255439	15.748	0.37567	15.748	15.658	16.033	0					14	9	3	0	0	0	0.62235	1	4138	4138		31.53	2.3803	1	651580			24909	6783	16472	16533	25248	25248					-0.05780974457707089
LNIVGLVGSI	10	Unmodified	_LNIVGLVGSI_					0	0	0		PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant;ENST00000546964.5_1_12:48513149-48528944:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant	PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.8076171875	2	492.808042	983.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.077	1	35.077	34.577	35.577	0								0	0	0	0.4201	1	13124	13124		20.947	0.4651	1				24910	5017	16473	16534	25249	25249					0.10907503999760593
LNKGVVEWR	9	Unmodified	_LNKGVVEWR_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.54510498046875	3	367.545219	1099.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.003	1	21.003	20.503	21.503	0								0	0	0	0.37496	1	5714	5714		13.454	0	1		+		24911	13108	16474	16535	25250	25250					0.06800540462791105
LNKKYERTF	9	Unmodified	_LNKKYERTF_					0	0	0			REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.22265625	3	400.224146	1197.65061	-1.3213	-0.00052883	-2.1571	-0.00086332	-3.4784	-0.0013922	400.2233171190938	16.552	0.12282	16.552	16.471	16.593	0					5	3	2	0	0	0	0.47473	1	4006	4006		35.152	3.5178	1	213110	+		24912	22147	16475	16536	25251	25251					0.05968792288695113
LNKLIHQS	8	Unmodified	_LNKLIHQS_					0	0	0		DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant;ENSG00000109832|ENST00000263576|DDX25	DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant	DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.78216552734375	2	476.782359	951.550165	-0.35787	-0.00017063	-0.11591	-5.5265E-05	-0.47378	-0.00022589	476.78239857200583	23.998	0.36147	23.998	23.904	24.265	0					22	8	3	0	0	0	0.27512	1	8033	8033		90.777	0	1	1215700			24913	758	16476	16537	25252	25252					0.07245180025711306
LNLALVAE	8	Unmodified	_LNLALVAE_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.7528381347656	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.309	1	33.309	32.809	33.809	0								0	0	0	1.7419	1	11676	11676		55.504	0	1				24914	3506	16477	16538	25253	25253					0.06383284011519663
LNLHHRSP	8	Unmodified	_LNLHHRSP_					0	0	0		CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant;nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1;ENST00000573209.1_1_17:7350776-7358776:+|nuORF	CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant	CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2691955566406	2	487.26995	972.525347	-2.9117	-0.0014188	0.90645	0.00044168	-2.0053	-0.00097711	487.27045180928064	25.262	0.50978	25.262	25.029	25.539	0					30	12	4	0	0	0	0.65276	1	7966	7966		40.573	40.573	1	3501300			24915	538	16478	16539	25254	25254					0.0379854494300389
LNLHPIQS	8	Unmodified	_LNLHPIQS_					0	0	0			REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555	REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2611083984375	2	461.261259	920.507966	-0.12086	-5.5746E-05	0.25126	0.0001159	0.13041	6.0151E-05	461.2614107797365	31.34	0.21924	31.34	31.243	31.463	0					10	5	3	0	0	0	0.49216	1	10778	10778		60.972	0	1	161320	+		24916	17075	16479	16540	25255	25255					0.044532046173458184
LNLKSSGL	8	Unmodified	_LNLKSSGL_					0	0	0		EPHX3|p.R86S|1|0.28|ENSG00000105131|chr19:15231849-15231849|G/T|missense_variant;ENSG00000105131|ENST00000221730|EPHX3	EPHX3|p.R86S|1|0.28|ENSG00000105131|chr19:15231849-15231849|G/T|missense_variant	EPHX3|p.R86S|1|0.28|ENSG00000105131|chr19:15231849-15231849|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.2502746582031	2	416.25036	830.486168	0.066599	2.7722E-05	-0.65027	-0.00027067	-0.58367	-0.00024295	416.2501017780685	20.874	0.26352	20.874	20.781	21.045	0					6	5	2	0	0	0	0.73426	1	6830	6830		29.15	0	1	177960			24917	2331	16480	16541	25256	25256					0.06414399868754117
LNLMISFHK	9	Oxidation (M)	_LNLM(Oxidation (M))ISFHK_		LNLM(1)ISFHK		LNLM(53)ISFHK	0	0	1			REV__ENST00000568855.1_1_16:70265056-70269235:-|nuORF	REV__ENST00000568855.1_1_16:70265056-70269235:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.53814697265625	3	373.539077	1117.5954	-2.1105	-0.00078836	-0.51128	-0.00019098	-2.6218	-0.00097934	373.5388762537738	31.162	0.49559	31.162	31.059	31.555	0					25	13	4	0	0	0	0.27249	1	10690	10690		52.937	12.159	1	468390	+		24918	20363	16481	16542	25257	25257		736			0.04130662496595505
LNLNPQLDD	9	Unmodified	_LNLNPQLDD_					0	0	0			REV__nc|ENSG00000183020|O94973-2|AP2A2	REV__nc|ENSG00000183020|O94973-2|AP2A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2654418945312	2	521.264196	1040.51384	0.075992	3.9612E-05	3.3103	0.0017256	3.3863	0.0017652	521.2653783039514	37.819	0.28293	37.819	37.628	37.911	0					21	9	3	0	0	0	0.35045	1	14321	14321		45.952	9.5052	1	290820	+		24919	16905	16482	16543	25258	25258					-0.004797416616611372
LNLQRQLN	8	Unmodified	_LNLQRQLN_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7904968261719	2	499.790715	997.566878	1.0773	0.00053841	-1.2805	-0.00063998	-0.20323	-0.00010157	499.7899210666212	28.95	0.16548	28.95	28.843	29.009	0					8	3	3	0	0	0	0.29152	1	10564	10564		62.978	6.2574	1	563240	+		24920	21233	16483	16544	25259	25259					0.06799680911660744
LNLRLTWAA	9	Unmodified	_LNLRLTWAA_					0	0	0			REV__nc|ENSG00000198089|A8K8P3-4|SFI1	REV__nc|ENSG00000198089|A8K8P3-4|SFI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.2098388671875	3	353.209948	1056.60801	0.7082	0.00025014	-0.22525	-7.9562E-05	0.48295	0.00017058	353.2096326012024	25.666	0.1318	25.666	25.584	25.716	0					11	3	4	0	0	0	0.61124	1	8812	8812		19.104	8.5167	1	330010	+		24921	21185	16484	16545	25260	25260					0.081974419511198
LNLWQKME	8	Unmodified	_LNLWQKME_					0	0	0		SCAF4|p.N120Mfs*25|2|0.14|ENSG00000156304|chr21:31702342-31702342|T/-|frameshift_variant	SCAF4|p.N120Mfs*25|2|0.14|ENSG00000156304|chr21:31702342-31702342|T/-|frameshift_variant	SCAF4|p.N120Mfs*25|2|0.14|ENSG00000156304|chr21:31702342-31702342|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2777099609375	2	531.276052	1060.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.149	1	18.149	17.649	18.649	0								0	0	0	1.7419	1	4475	4475		33.516	0	1				24922	22376	16485	16546	25261	25261					0.009704005711910213
LNMVCVKLQ	9	Carbamidomethyl (C)	_LNMVC(Carbamidomethyl (C))VKLQ_	LNMVC(1)VKLQ		LNMVC(61)VKLQ		0	1	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.7977294921875	2	552.798837	1103.58312	-1.2508	-0.00069144	-1.0937	-0.00060461	-2.3445	-0.0012961	552.7981303347826	36.13	0.098278	36.13	36.06	36.158	0					5	3	2	0	0	0	0.20551	1	12923	12923		60.972	9.6365	1	49630			24923	3727	16486	16547	25262	25262	162				0.03547302761876381
LNNHAVGRLD	10	Unmodified	_LNNHAVGRLD_					0	0	0			REV__ENSG00000224389|ENST00000435363|C4B	REV__ENSG00000224389|ENST00000435363|C4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.19903564453125	3	370.200111	1107.5785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.46	1	32.46	31.96	32.96	0								0	0	0	0.38879	1	12242	12242		33.922	1.1092	1		+		24924	17623	16487	16548	25263	25263					0.029018779349826218
LNNKEKKTM	9	Unmodified	_LNNKEKKTM_					0	0	0		tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3052368164062	2	553.305341	1104.59613	0.62493	0.00034578	-2.7087	-0.0014987	-2.0838	-0.001153	553.3038541055146	21.734	0.61487	21.734	21.504	22.119	0					25	14	2	0	0	0	0.24334	1	6960	6960		56.434	1.6575	1	726300			24925	22877	16488	16549	25264	25264					0.048014571456405974
LNNKEKKTM	9	Unmodified	_LNNKEKKTM_					0	0	0		tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.3056640625	2	553.305341	1104.59613	1.1416	0.00063165	-0.5698	-0.00031528	0.57179	0.00031637	553.3049297530808	21.505	0.14902	21.505	21.435	21.584	0					7	3	3	0	0	0	0.13726	1	6253	6253		70.816	9.1249	1	182510			24926	22877	16488	16549	25265	25265					0.048014571456405974
LNNKEKKTM	9	Unmodified	_LNNKEKKTM_					0	0	0		tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.3065185546875	2	553.305341	1104.59613	-1.2045	-0.00066647	2.6113	0.0014448	1.4068	0.00077837	553.3066995641987	21.525	0.14994	21.525	21.422	21.572	0					7	3	3	0	0	0	0.50761	1	6261	6261		31.634	0.10446	1	334640			24927	22877	16488	16549	25266	25266					0.048014571456405974
LNNKFTSF	8	Unmodified	_LNNKFTSF_					0	0	0		KRT71|p.A142T|1|0.27|ENSG00000139648|chr12:52552654-52552654|C/T|missense_variant	KRT71|p.A142T|1|0.27|ENSG00000139648|chr12:52552654-52552654|C/T|missense_variant	KRT71|p.A142T|1|0.27|ENSG00000139648|chr12:52552654-52552654|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.75335693359375	2	485.753267	969.491981	-0.02142	-1.0405E-05	0.86268	0.00041905	0.84126	0.00040864	485.7536617725337	35.939	0.17225	35.939	35.897	36.069	0					13	8	2	0	0	0	0.59411	1	11780	11780		50.025	7.5501	1	154790			24928	11266	16489	16550	25267	25267					0.006014983804334406
LNPISKTLF	9	Unmodified	_LNPISKTLF_					0	0	0		ENST00000393485.5_1_7:115580607-115581081:-|nuORF	ENST00000393485.5_1_7:115580607-115581081:-|nuORF	ENST00000393485.5_1_7:115580607-115581081:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.8058471679688	2	516.808042	1031.60153	-0.0040999	-2.1188E-06	-3.1192	-0.001612	-3.1233	-0.0016141	516.8061681458183	28.854	0.11979	28.854	28.769	28.889	0					6	4	2	0	0	0	0.3269	1	9339	9339		25.574	0	1	74237			24929	9156	16490	16551	25268	25268					0.08699503999741864
LNPVLCGAV	9	Unmodified	_LNPVLCGAV_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.24566650390625	2	443.246763	884.478974	-0.49885	-0.00022111	-3.1653	-0.001403	-3.6641	-0.0016241	443.2452750532519	30.206	0.5125	30.206	29.896	30.408	0					14	10	2	0	0	0	0.50461	1	11168	11168		31.955	2.1133	1	102620	+		24930	17098	16491	16552	25269	25269					0.03211343996679261
LNPVTQAP	8	Unmodified	_LNPVTQAP_					0	0	0		ITCH-PIGU|2|fusion;nc|ENSG00000289720|Q96J02-3|ITCH;ITCH-PIGU|3|fusion;ITCH-PIGU|1|fusion;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	ITCH-PIGU|2|fusion	ITCH-PIGU|2|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.2351989746094	2	420.23471	838.454868	-0.065294	-2.7439E-05	-3.4982	-0.0014701	-3.5635	-0.0014975	420.2342438438363	19.783	0.31709	19.783	19.576	19.894	0					11	6	2	0	0	0	0.72381	1	6279	6279		30.504	5.0535	1	56814			24931	1606	16492	16553	25270	25270					0.02917826834675452
LNQGSEGGSPL	11	Unmodified	_LNQGSEGGSPL_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7597045898438	2	529.759278	1057.504	0.46275	0.00024514	0.71674	0.0003797	1.1795	0.00062484	529.7596909323933	25.706	0.13875	25.706	25.606	25.744	0					7	4	2	0	0	0	0.38515	1	7768	7768		53.089	0.15226	1	231420	+		24932	20948	16493	16554	25271	25271					-0.022449296670401964
LNQKMKSNWP	10	Unmodified	_LNQKMKSNWP_					0	0	0		ENST00000329433.10_1_5:179048281-179050040:-|nuORF	ENST00000329433.10_1_5:179048281-179050040:-|nuORF	ENST00000329433.10_1_5:179048281-179050040:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	623.325439453125	2	623.324065	1244.63358	0.55088	0.00034338	1.4672	0.00091456	2.0181	0.0012579	623.3249878325377	19.039	0.089628	19.039	18.993	19.083	0					4	2	2	0	0	0	0.43008	1	5684	5684		52.937	0	1	492350			24933	8666	16494	16555	25272	25272					0.021045484112619306
LNQNIAKI	8	Unmodified	_LNQNIAKI_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.276611328125	2	457.276909	912.539266	0.76798	0.00035118	-1.535	-0.00070194	-0.76706	-0.00035076	457.27619996055506	34.997	0.24894	34.997	34.915	35.164	0					12	6	3	0	0	0	0.28158	1	13097	13097		88.643	0	1	367030	+		24934	14737	16495	16556	25273	25273					0.07949777651424483
LNQVAGLL	8	Unmodified	_LNQVAGLL_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.25274658203125	2	414.252903	826.491253	-0.38735	-0.00016046	0.027123	1.1236E-05	-0.36022	-0.00014922	414.25290444364333	30.253	0.51062	30.253	29.947	30.458	0					28	10	4	0	0	0	0.4723	1	11143	11143		62.978	8.2138	1	1288600			24935	7858	16496	16557	25274	25274					0.07106703731381003
LNQVSLSVLK	10	Unmodified	_LNQVSLSVLK_					0	0	0			REV__CTSS|p.A164V|1|0.29|ENSG00000163131|chr1:150751917-150751917|G/A|missense_variant	REV__CTSS|p.A164V|1|0.29|ENSG00000163131|chr1:150751917-150751917|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8387451171875	2	550.837331	1099.66011	1.6649	0.00091709	-1.2077	-0.00066524	0.4572	0.00025184	550.8366321871962	37.865	0.30544	37.865	37.776	38.081	0					26	10	3	0	0	0	0.54861	1	14916	14916		40.058	4.9061	1	243210	+		24936	12648	16497	16558	25275	25275					0.11426560574227551
LNRFVMPCY	9	Carbamidomethyl (C)	_LNRFVMPC(Carbamidomethyl (C))Y_	LNRFVMPC(1)Y		LNRFVMPC(42)Y		0	1	0			REV__PIP4K2A|p.R141Dfs*19|1|0.27|ENSG00000150867|chr10:22591700-22591700|T/-|frameshift_variant	REV__PIP4K2A|p.R141Dfs*19|1|0.27|ENSG00000150867|chr10:22591700-22591700|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2901611328125	2	600.288637	1198.56272	2.1031	0.0012625	0.48062	0.00028851	2.5837	0.001551	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.39123	1	18273	18273		42.474	42.474	1	67330000	+		24937	15456	16498	16559	25276	25276	567				-0.028618678979228207
LNRNFNQQL	9	Unmodified	_LNRNFNQQL_					0	0	0		nc|ENSG00000132196|P56937-3|HSD17B7	nc|ENSG00000132196|P56937-3|HSD17B7	nc|ENSG00000132196|P56937-3|HSD17B7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.8719482421875	3	382.871995	1145.59415	-0.13955	-5.3428E-05	0.27663	0.00010592	0.13709	5.2487E-05	382.8718986804167	13.956	0.062914	13.956	13.934	13.997	0					4	2	2	0	0	0	0.35045	1	2883	2883		44.377	2.1346	1	97387			24938	11526	16499	16560	25277	25277					0.02718164452039673
LNRNLGHR	8	Unmodified	_LNRNLGHR_					0	0	0			REV__nc|ENSG00000198682|O95340|PAPSS2	REV__nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2816467285156	2	490.280849	978.547145	0.59665	0.00029252	1.1372	0.00055753	1.7338	0.00085006	490.28139870310906	38.38	0.28696	38.38	38.223	38.51	0					22	10	3	0	0	0	0.70055	1	15040	15040		33.516	33.516	1	404380	+		24939	17416	16500	16561	25278	25278					0.05701349691571522
LNRPGGPP	8	Unmodified	_LNRPGGPP_					0	0	0			REV__ENSG00000112320|ENST00000317357|SOBP	REV__ENSG00000112320|ENST00000317357|SOBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.2275390625	2	404.22722	806.439886	-0.11051	-4.4672E-05	0.46456	0.00018779	0.35405	0.00014312	404.2273387309728	28.365	0.23966	28.365	28.296	28.536	0					11	8	2	0	0	0	0.67475	1	8858	8858		37.028	3.5129	1	81476	+		24940	14001	16501	16562	25279	25279					0.028923797573384036
LNRYVSEV	8	Unmodified	_LNRYVSEV_					0	0	0			REV__tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	REV__tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.26336669921875	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.611	1	21.611	21.111	22.111	0								0	0	0	1.7419	1	5978	5978		19.36	0	1		+		24941	21824	16502	16563	25280	25280					0.02332883409144415
LNSELENGKQ	10	Unmodified	_LNSELENGKQ_					0	0	0		nc|ENSG00000266302|A2RUR9-3|CCDC144A;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A;nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF	nc|ENSG00000266302|A2RUR9-3|CCDC144A	nc|ENSG00000266302|A2RUR9-3|CCDC144A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.2894897460938	2	566.28566	1130.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.698	1	46.698	46.198	47.198	0								0	0	0	0.38475	1	18679	18679		35.152	0.97948	1				24942	6213	16503	16564	25281	25281					-0.0032897160422180605
LNSEYNLID	9	Unmodified	_LNSEYNLID_					0	0	0		tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1	tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1	tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.267578125	2	540.764029	1079.5135	1.9964	0.0010796	-0.77673	-0.00042003	1.2197	0.00065956	540.7636306426931	34.852	0.42118	34.852	34.727	35.148	0					36	12	4	0	0	0	0.36892	1	13525	13525		44.377	3.8046	1	1699200			24943	22753	16504	16565	25282	25282					-0.023071613815318415
LNSHLLPK	8	Unmodified	_LNSHLLPK_					0	0	0		ENSG00000156006|ENST00000286479|NAT2	ENSG00000156006|ENST00000286479|NAT2	ENSG00000156006|ENST00000286479|NAT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2782287597656	2	461.279452	920.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.953	1	11.953	11.453	12.453	0								0	0	0	1.7419	1	2427	2427		39.253	2.0937	1				24944	5149	16505	16566	25283	25283					0.08090081514058056
LNSLGRPD	8	Unmodified	_LNSLGRPD_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2352294921875	2	436.235242	870.45593	0.75729	0.00033036	-0.58639	-0.0002558	0.1709	7.4552E-05	436.23499837271163	33.997	0.30398	33.997	33.892	34.196	0					13	6	3	0	0	0	0.39125	1	12993	12993		71.877	0	1	844660			24945	4710	16506	16567	25284	25284					0.015520412035698428
LNSSHAFI	8	Unmodified	_LNSSHAFI_					0	0	0			REV__ENSG00000006194|ENST00000219069|ZNF263	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.7319641113281	2	444.732335	887.450116	-0.29414	-0.00013082	-0.3276	-0.00014569	-0.62174	-0.00027651	444.732168571632	24.954	0.37457	24.954	24.851	25.226	0					29	11	4	0	0	0	0.57802	1	7417	7417		52.299	6.3472	1	1306700	+		24946	12848	16507	16568	25285	25285					0.0018894269190923296
LNSSRPTP	8	Unmodified	_LNSSRPTP_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.23468017578125	2	436.235242	870.45593	-0.65349	-0.00028508	-0.023011	-1.0038E-05	-0.6765	-0.00029511	436.2352840776157	33.82	0.19509	33.82	33.741	33.936	0					8	5	2	0	0	0	0.46013	1	11914	11914		64.207	18.255	1	134280			24947	2165	16508	16569	25286	25286					0.015520412035812114
LNSTAKKWLQ	10	Unmodified	_LNSTAKKWLQ_					0	0	0		ENST00000425424.3_1_6:31731928-31732414:+|nuORF;ENST00000476085.1_3_6:31731200-31732414:+|nuORF	ENST00000425424.3_1_6:31731928-31732414:+|nuORF	ENST00000425424.3_1_6:31731928-31732414:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.8970947265625	3	396.896029	1187.66626	3.1665	0.0012568	-0.38802	-0.00015401	2.7785	0.0011028	396.89593706866305	15.823	0.26701	15.823	15.613	15.88	0					16	5	4	0	0	0	0.45669	1	4247	4247		50.034	16.994	1	772840			24948	9434	16509	16570	25287	25287					0.07993078805770892
LNSVYIGPAG	10	Unmodified	_LNSVYIGPAG_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.767333984375	2	495.766374	989.518196	-0.037482	-1.8582E-05	3.2679	0.0016201	3.2304	0.0016015	495.76748343722556	33.86	0.25753	33.86	33.723	33.981	0					10	6	2	0	0	0	0.49411	1	13022	13022		45.972	3.108	1	49692			24949	2320	16510	16571	25288	25288					0.0230176755192133
LNTKLTTIA	9	Unmodified	_LNTKLTTIA_					0	0	0		NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant	NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant	NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7980651855469	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.472	1	19.472	18.972	19.972	0								0	0	0	0.1633	1	5881	5881		56.721	8.8055	1				24950	11849	16511	16572	25289	25289					0.09294913620067291
LNTVDTKSPE	10	Unmodified	_LNTVDTKSPE_					0	0	0		ENST00000549914.1_1_12:93399872-93400010:+|nuORF;ENST00000552353.2_1_12:93399872-93413194:+|nuORF	ENST00000549914.1_1_12:93399872-93400010:+|nuORF	ENST00000549914.1_1_12:93399872-93400010:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.2830200195312	2	552.282586	1102.55062	1.3181	0.00072797	-0.4094	-0.00022611	0.9087	0.00050186	552.2824662225734	28.26	0.15778	28.26	28.21	28.368	0					8	5	2	0	0	0	0.59277	1	8807	8807		35.152	2.3396	1	40907			24951	10609	16512	16573	25290	25290					0.0034451016424554837
LNVIINQY	8	Unmodified	_LNVIINQY_					0	0	0			REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7756652832031	2	488.776742	975.538931	3.5084	0.0017148	-3.4056	-0.0016646	0.10273	5.0213E-05	488.77478128316545	25.52	0.17154	25.52	25.407	25.579	0					9	6	2	0	0	0	0.79719	1	7938	7938		18.324	0.95945	1	59405	+		24952	12725	16513	16574	25291	25291					0.05018357931567152
LNVKNVPLK	9	Unmodified	_LNVKNVPLK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.331298828125	2	512.829309	1023.64407	0.54636	0.00028019	-0.0056397	-2.8922E-06	0.54072	0.0002773	512.8290746747034	34.738	0.19741	34.738	34.585	34.783	0					9	5	2	0	0	0	0.39215	1	13373	13373		42.396	0.96952	1	127180			24953	6453	16514	16575	25292	25292					0.13318899128000794
LNVRAINGT	9	Unmodified	_LNVRAINGT_					0	0	0			REV__ENSG00000102837|ENST00000219022|OLFM4	REV__ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2772521972656	2	479.277441	956.540328	0.66221	0.00031738	-0.32892	-0.00015764	0.33329	0.00015974	479.27719127091274	48.484	1.2038	48.484	48.162	49.366	0					103	72	2	0	0	0	0.61124	1	18457	18457		19.997	0	1	170910	+		24954	13648	16515	16576	25293	25293					0.06031992020314192
LNWTSSSI	8	Unmodified	_LNWTSSSI_					0	0	0		nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2312316894531	2	454.229625	906.444697	2.5075	0.001139	0.72993	0.00033156	3.2374	0.0014705	454.23007095663206	24.699	0.30341	24.699	24.595	24.899	0					15	6	4	0	0	0	0.30437	1	8563	8563		82.305	2.3658	1	2142900			24955	3753	16516	16577	25294	25294					-0.012267808905676247
LNYIGLLDC	9	Unmodified	_LNYIGLLDC_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.264404296875	2	512.26261	1022.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.536	1	19.536	19.036	20.036	0								0	0	0	0.28164	1	5911	5911		38.806	0	1				24956	3445	16517	16578	25295	25295					0.00031291959965074057
LPAAGSLLF	9	Unmodified	_LPAAGSLLF_					0	0	0			REV__nc|ENSG00000114013|P42081-4|CD86	REV__nc|ENSG00000114013|P42081-4|CD86	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7631530761719	2	444.763104	887.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.935	1	36.935	36.435	37.435	0								0	0	0	0.22106	1	14418	14418		47.916	5.4411	1		+		24957	14061	16518	16579	25296	25296					0.06339874391176181
LPADSPPPVRS	11	Unmodified	_LPADSPPPVRS_					0	0	0			REV__ENSG00000223953|ENST00000528368|C1QTNF5	REV__ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.2080383300781	3	379.208384	1134.60332	-0.72921	-0.00027652	-0.15587	-5.9108E-05	-0.88508	-0.00033563	379.20845865285906	26.235	0.14674	26.235	26.166	26.313	0					6	4	2	0	0	0	0.72154	1	8228	8228		35.178	14.231	1	48326	+		24958	17621	16519	16580	25297	25297					0.04140513017705416
LPAETMRIVL	10	Unmodified	_LPAETMRIVL_					0	0	0		USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5594787597656	3	381.558248	1141.65292	3.2334	0.0012337	0.089812	3.4268E-05	3.3232	0.001268	381.5583101137733	20.268	0.31838	20.268	20.159	20.477	0					9	6	2	0	0	0	0.52275	1	6423	6423		42.864	11.23	1	1022300			24959	6219	16520	16581	25298	25298					0.08775504702157377
LPAFAGHLR	9	Unmodified	_LPAFAGHLR_					0	0	0		ENST00000500698.1_1_11:9778373-9781063:-|nuORF	ENST00000500698.1_1_11:9778373-9781063:-|nuORF	ENST00000500698.1_1_11:9778373-9781063:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2839660644531	2	491.285069	980.555585	-2.7182	-0.0013354	-1.4923	-0.00073312	-4.2104	-0.0020685	491.28437815374366	14.712	0.9402	14.712	14.595	15.535	0					67	36	3	0	0	0	0.55282	1	3443	3443		26.796	0	1	601790			24960	10145	16521	16582	25299	25299					0.06452903608180804
LPAHDSRLR	9	Unmodified	_LPAHDSRLR_					0	0	0		ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.802734375	2	532.801614	1063.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.09	1	40.09	39.59	40.59	0								0	0	0	0.23459	1	15280	15280		45.952	1.8352	1				24961	6345	16522	16583	25300	25300					0.059424856602163345
LPAIASSS	8	Unmodified	_LPAIASSS_					0	0	0		ENST00000524717.5_1_11:96075063-96075294:-|nuORF	ENST00000524717.5_1_11:96075063-96075294:-|nuORF	ENST00000524717.5_1_11:96075063-96075294:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20977783203125	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.08	1	39.08	38.58	39.58	0								0	0	0	1.7419	1	15416	15416		37.028	0	1				24962	10348	16523	16584	25301	25301					0.01934449052009768
LPAKDIQTNVY	11	Unmodified	_LPAKDIQTNVY_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.3426513671875	2	631.342978	1260.6714	-0.73015	-0.00046097	0.49415	0.00031198	-0.236	-0.000149	631.3435075266209	32.002	0.30907	32.002	31.882	32.191	0					21	12	3	0	0	0	0.63398	1	10629	10629		33.922	3.418	1	91644			24963	1933	16524	16585	25302	25302					0.0514933787769678
LPAKILVEF	9	Unmodified	_LPAKILVEF_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3207397460938	2	515.320786	1028.62702	1.5004	0.0007732	-1.2736	-0.00065631	0.22684	0.00011689	515.3201256413752	48.472	0.34715	48.472	48.372	48.719	0					38	18	3	0	0	0	0.078509	1	19247	19247		85.161	44.588	1	185360			24964	3292	16525	16586	25303	25303					0.11384978522164602
LPAMIVLFF	9	Oxidation (M)	_LPAM(Oxidation (M))IVLFF_		LPAM(1)IVLFF		LPAM(60)IVLFF	0	0	1			REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8060913085938	2	533.803914	1065.59328	0.71349	0.00038086	3.1359	0.001674	3.8494	0.0020548	533.8057013528162	28.868	0.16656	28.868	28.758	28.925	0					5	3	2	0	0	0	0.21025	1	10522	10522		60.404	11.193	1	185670	+		24965	21521	16526	16587	25304	25304		778			0.06310233758767936
LPAPPTQNM	9	Unmodified	_LPAPPTQNM_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18;SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.74786376953125	2	484.747127	967.479702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.965	1	34.965	34.465	35.465	0								0	0	0	0.3304	1	11452	11452		29.15	0	1				24966	4440	16527	16588	25305	25305					-0.005338613542676285
LPAPPTQNM	9	Unmodified	_LPAPPTQNM_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18;SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7463684082031	2	484.747127	967.479702	-1.2345	-0.00059842	-0.67398	-0.00032671	-1.9085	-0.00092513	484.74733152433276	34.991	0.49794	34.991	34.656	35.154	0					40	22	2	0	0	0	0.17854	1	11764	11764		64.207	11.271	1	177400			24967	4440	16527	16588	25306	25306					-0.005338613542676285
LPAPPTQNM	9	Unmodified	_LPAPPTQNM_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18;SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.74688720703125	2	484.747127	967.479702	0.65761	0.00031877	1.612	0.0007814	2.2696	0.0011002	484.74665318875344	35.082	0.67112	35.082	34.794	35.466	0					55	19	4	0	0	0	0.034359	1	13608	13608		104.75	19.387	1	906140			24968	4440	16527	16588	25307	25307					-0.005338613542676285
LPAPPTQNM	9	Unmodified	_LPAPPTQNM_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18;SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7467956542969	2	484.747127	967.479702	-0.25663	-0.0001244	-0.97781	-0.00047399	-1.2344	-0.00059839	484.7468885549526	34.977	0.37509	34.977	34.717	35.092	0					22	13	3	0	0	0	0.17854	1	12423	12423		64.207	12.872	1	140000			24969	4440	16527	16588	25308	25308					-0.005338613542676285
LPAPPTQNM	9	Unmodified	_LPAPPTQNM_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18;SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.74658203125	2	484.747127	967.479702	0.85381	0.00041388	-2.8845	-0.0013983	-2.0307	-0.00098439	484.74636454782205	35.123	0.80934	35.123	34.572	35.381	0					47	16	4	0	0	0	0.034359	1	13517	13517		104.75	40.539	1	1124100			24970	4440	16527	16588	25309	25309					-0.005338613542676285
LPAPPTQNM	9	Unmodified	_LPAPPTQNM_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18;SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7469177246094	2	484.747127	967.479702	2.4791	0.0012018	-0.090157	-4.3703E-05	2.389	0.0011581	484.7458474322832	35.052	0.71496	35.052	34.7	35.415	0					42	14	4	0	0	0	0.030949	1	13533	13533		108.09	42.284	1	1236400			24971	4440	16527	16588	25310	25310					-0.005338613542676285
LPAPSGIGH	9	Unmodified	_LPAPSGIGH_					0	0	0		ENST00000502922.5_1_5:176882475-176882797:+|nuORF	ENST00000502922.5_1_5:176882475-176882797:+|nuORF	ENST00000502922.5_1_5:176882475-176882797:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.734619140625	2	424.734877	847.455202	0.33178	0.00014092	-0.31085	-0.00013203	0.020928	8.8891E-06	424.7346584288884	26.737	0.40101	26.737	26.598	26.999	0					20	9	3	0	0	0	0.083791	1	9249	9249		83.287	6.4406	1	360320			24972	10162	16528	16589	25311	25311					0.02537246554527428
LPAPVNCGDL	10	Unmodified	_LPAPVNCGDL_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7525329589844	2	499.75241	997.490267	-0.005314	-2.6557E-06	-0.49216	-0.00024596	-0.49748	-0.00024862	499.752162133425	36.39	0.22787	36.39	36.292	36.52	0					11	6	2	0	0	0	0.46215	1	14150	14150		49.442	1.5259	1	131710			24973	2956	16529	16590	25312	25312					-0.008578786998327814
LPAQKTEVF	9	Unmodified	_LPAQKTEVF_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant;XDH|p.P555Qfs*67|1|0.27|ENSG00000158125|chr2:31373895-31373895|G/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7894287109375	2	516.78985	1031.56515	1.4913	0.00077071	-3.5338	-0.0018262	-2.0424	-0.0010555	516.788491407951	31.478	0.5486	31.478	31.216	31.764	0					28	10	4	0	0	0	0.078509	1	11862	11862		85.161	23.053	1	871340			24974	5246	16530	16591	25313	25313					0.05062627103052364
LPAQQVHNY	9	Unmodified	_LPAQQVHNY_					0	0	0		ENST00000495137.5_1_6:394829-397293:+|nuORF;ENSG00000137265|ENST00000380956|IRF4	ENST00000495137.5_1_6:394829-397293:+|nuORF	ENST00000495137.5_1_6:394829-397293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2752685546875	2	535.274898	1068.53524	1.2019	0.00064332	-0.52885	-0.00028308	0.673	0.00036024	535.2747147773356	24.72	0.11681	24.72	24.661	24.778	0					4	2	2	0	0	0	0.062676	1	8697	8697		90.777	55.158	1	247280			24975	4153	16531	16592	25314	25314					0.0037168815772474773
LPAQQVHNY	9	Unmodified	_LPAQQVHNY_					0	0	0		ENST00000495137.5_1_6:394829-397293:+|nuORF;ENSG00000137265|ENST00000380956|IRF4	ENST00000495137.5_1_6:394829-397293:+|nuORF	ENST00000495137.5_1_6:394829-397293:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2755126953125	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.595	1	24.595	24.095	25.095	0								0	0	0	0.1836	1	7693	7693		53.351	21.397	1				24976	4153	16531	16592	25315	25315					0.0037168815772474773
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant;GAS6|p.G150Afs*49|1|0.17|ENSG00000183087|chr13:113839745-113839745|C/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7769775390625	2	516.777274	1031.53999	0.34889	0.0001803	1.8027	0.00093157	2.1515	0.0011119	516.777194821136	28.523	0.39419	28.523	28.395	28.789	0					50	16	6	0	0	0	0.098791	1	8905	8905		79.713	16.406	1	461280			24977	6941	16532	16593	25316	25316					0.02548572300474916
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant;GAS6|p.G150Afs*49|1|0.17|ENSG00000183087|chr13:113839745-113839745|C/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7774658203125	2	516.777274	1031.53999	0.042271	2.1845E-05	2.2272	0.001151	2.2695	0.0011728	516.7772746750871	28.774	0.69184	28.774	28.515	29.207	0					39	17	4	0	0	0	0.047855	1	10206	10206		96.034	21.779	1	2900500			24978	6941	16532	16593	25317	25317					0.02548572300474916
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant;GAS6|p.G150Afs*49|1|0.17|ENSG00000183087|chr13:113839745-113839745|C/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7779541015625	2	516.777274	1031.53999	0.017574	9.0819E-06	3.4186	0.0017666	3.4361	0.0017757	516.7776538556535	28.527	0.48421	28.527	28.319	28.803	0					46	18	5	0	0	0	0.032383	1	9199	9199		106.68	32.428	1	735060			24979	6941	16532	16593	25318	25318					0.02548572300474916
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant;GAS6|p.G150Afs*49|1|0.17|ENSG00000183087|chr13:113839745-113839745|C/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7772827148438	2	516.777274	1031.53999	1.5043	0.0007774	0.79246	0.00040952	2.2968	0.0011869	516.7765695426425	28.777	0.81864	28.777	28.515	29.334	0					56	16	6	0	0	0	0.063171	1	10589	10589		90.601	19.305	1	3919300			24980	6941	16532	16593	25319	25319					0.02548572300474916
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant;GAS6|p.G150Afs*49|1|0.17|ENSG00000183087|chr13:113839745-113839745|C/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.777587890625	2	516.777274	1031.53999	1.542	0.00079687	-0.65528	-0.00033863	0.88671	0.00045823	516.7767708729074	28.762	0.46727	28.762	28.542	29.009	0					25	9	4	0	0	0	0.16806	1	10463	10463		65.465	23.069	1	651730			24981	6941	16532	16593	25320	25320					0.02548572300474916
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant;GAS6|p.G150Afs*49|1|0.17|ENSG00000183087|chr13:113839745-113839745|C/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7772216796875	2	516.777274	1031.53999	3.3121	0.0017116	-0.78725	-0.00040683	2.5248	0.0013048	516.77551225665	28.731	0.91525	28.731	28.375	29.291	0					56	18	5	0	0	0	0.082776	1	10431	10431		83.647	22.675	1	5504300			24982	6941	16532	16593	25321	25321					0.02548572300474916
LPCHLLLLY	9	Unmodified	_LPCHLLLLY_					0	0	0			REV__ENST00000547216.1_1_12:57871100-57871594:-|nuORF	REV__ENST00000547216.1_1_12:57871100-57871594:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.8154296875	2	542.814813	1083.61507	0.62041	0.00033677	0.17542	9.522E-05	0.79583	0.00043199	542.8150995015122	25.907	0.24819	25.907	25.718	25.966	0					6	3	2	0	0	0	0.45358	1	9100	9100		14.664	0	1	251940	+		24983	20173	16533	16594	25322	25322					0.07661038507376361
LPCLAGRLCF	10	Unmodified	_LPCLAGRLCF_					0	0	0		nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant;ENSG00000142330|ENST00000391984|CAPN10;nc|ENSG00000142330|Q9HC96-6|CAPN10;nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10	nc|ENSG00000142330|Q9HC96-4|CAPN10	nc|ENSG00000142330|Q9HC96-4|CAPN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.787353515625	2	546.788272	1091.56199	0.45718	0.00024998	-0.0090961	-4.9736E-06	0.44808	0.00024501	546.7882431980604	39.692	0.2071	39.692	39.578	39.785	0					26	11	4	0	0	0	0.4943	1	13316	13316		45.952	1.5748	1	181520			24984	365	16534	16595	25323	25323					0.01987337453033433
LPCQQAARF	9	Unmodified	_LPCQQAARF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.26416015625	2	517.266019	1032.51748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.297	1	38.297	37.797	38.797	0								0	0	0	0.12457	1	15046	15046		65.803	7.0212	1				24985	9616	16535	16596	25324	25324					0.0025264963119298045
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant;ENSG00000101138|ENST00000217109|CSTF1	CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant	CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.29052734375	2	522.290214	1042.56587	1.625	0.00084872	0.13722	7.167E-05	1.7622	0.00092039	522.290038526161	38.784	0.30972	38.784	38.627	38.937	0					16	6	4	0	0	0	0.10506	1	15245	15245		78.264	6.9681	1	364850			24986	702	16536	16597	25325	25325					0.046294217521108294
LPDFFPRPNT	10	Unmodified	_LPDFFPRPNT_					0	0	0		ENST00000468462.1_1_10:74994935-75000774:+|nuORF;ENST00000470798.5_1_10:74987874-74995082:+|nuORF;ENST00000475829.5_1_10:74992725-74995082:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1	ENST00000468462.1_1_10:74994935-75000774:+|nuORF	ENST00000468462.1_1_10:74994935-75000774:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.8768310546875	3	401.876746	1202.60841	0.51201	0.00020576	0.26517	0.00010657	0.77718	0.00031233	401.8766334819308	36.47	0.61237	36.47	36.217	36.829	0					19	12	2	0	0	0	0.65051	1	14192	14192		28.081	0.43757	1	279160			24987	4243	16537	16598	25326	25326					0.01520816880338316
LPDFPNHSP	9	Unmodified	_LPDFPNHSP_					0	0	0		ADGRB1|p.L1307P|1|0.1|ENSG00000181790|chr8:142542154-142542154|T/C|missense_variant	ADGRB1|p.L1307P|1|0.1|ENSG00000181790|chr8:142542154-142542154|T/C|missense_variant	ADGRB1|p.L1307P|1|0.1|ENSG00000181790|chr8:142542154-142542154|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2462768554688	2	512.248349	1022.48214	-0.31746	-0.00016262	-3.1825	-0.0016302	-3.5	-0.0017929	512.2467296804648	14.467	0.15435	14.467	14.407	14.561	0					14	7	3	0	0	0	0.43426	1	3130	3130		38.806	3.1879	1	190080			24988	73	16538	16599	25327	25327					-0.02819689624948296
LPDKTIASL	9	Unmodified	_LPDKTIASL_					0	0	0		RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant	RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2845153808594	2	479.2844	956.554247	0.024003	1.1504E-05	0.4925	0.00023605	0.51651	0.00024755	479.2843300859843	35.856	0.14631	35.856	35.739	35.885	0					10	7	2	0	0	0	0.19605	1	11742	11742		62.107	7.3311	1	57585			24989	3050	16539	16600	25328	25328					0.0742322472875685
LPDKTIASL	9	Unmodified	_LPDKTIASL_					0	0	0		RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant	RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2846374511719	2	479.2844	956.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.098	1	36.098	35.598	36.598	0								0	0	0	0.18541	1	14035	14035		53.089	0.15226	1				24990	3050	16539	16600	25329	25329					0.0742322472875685
LPDKTIASL	9	Unmodified	_LPDKTIASL_					0	0	0		RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant	RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2834777832031	2	479.2844	956.554247	-0.66022	-0.00031643	0.41118	0.00019707	-0.24905	-0.00011936	479.28434607646034	36.088	0.4155	36.088	35.881	36.297	0					19	8	3	0	0	0	0.28897	1	13936	13936		51.193	6.6616	1	381590			24991	3050	16539	16600	25330	25330					0.0742322472875685
LPDLNHSQVY	10	Unmodified	_LPDLNHSQVY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000594243.1_1_19:18965730-18966052:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.2988891601562	2	593.29857	1184.58259	0.29454	0.00017475	0.1732	0.00010276	0.46773	0.00027751	593.2986907316057	36.71	0.26189	36.71	36.522	36.784	0					11	7	2	0	0	0	0.38179	1	13836	13836		58.246	18.993	1	311360			24992	950	16540	16601	25331	25331					-0.002320773619430838
LPDLSGPHSY	10	Unmodified	_LPDLSGPHSY_					0	0	0		nc|ENSG00000176915|Q86XL3-3|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2	nc|ENSG00000176915|Q86XL3-3|ANKLE2	nc|ENSG00000176915|Q86XL3-3|ANKLE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.267578125	2	543.266739	1084.51892	2.0103	0.0010921	-1.0368	-0.00056328	0.97345	0.00052884	543.2659974063542	35.65	0.52219	35.65	35.262	35.784	0					16	10	2	0	0	0	0.12896	1	13784	13784		90.37	35.594	1	236600			24993	6633	16541	16602	25332	25332					-0.019954377990416106
LPDRDPGRE	9	Unmodified	_LPDRDPGRE_					0	0	0			REV__ENST00000587541.5_2_19:489254-489359:+|nuORF	REV__ENST00000587541.5_2_19:489254-489359:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7691040039062	2	527.767437	1053.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.778	1	36.778	36.278	37.278	0								0	0	0	0.30504	1	12453	12453		34.173	0.65696	1		+		24994	20495	16542	16603	25333	25333					-0.004298037102671515
LPDTLKVTY	9	Unmodified	_LPDTLKVTY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2976684570312	2	525.297507	1048.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.89	1	38.89	38.39	39.39	0								0	0	0	0.30504	1	12662	12662		34.173	5.023	1				24995	5352	16543	16604	25334	25334					0.058114939002507526
LPDTLKVTY	9	Unmodified	_LPDTLKVTY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2980346679688	2	525.297507	1048.58046	1.9021	0.00099918	-1.3343	-0.00070089	0.56785	0.00029829	525.2968442442756	39.237	0.43744	39.237	39.005	39.442	0					32	15	3	0	0	0	0.11411	1	14893	14893		76.17	21.393	1	313550			24996	5352	16543	16604	25335	25335					0.058114939002507526
LPDTLKVTY	9	Unmodified	_LPDTLKVTY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2972412109375	2	525.297507	1048.58046	0.99014	0.00052012	0.065511	3.4413E-05	1.0556	0.00055453	525.2973699727461	39.199	0.2361	39.199	39.113	39.349	0					14	8	2	0	0	0	0.14578	1	15391	15391		68.846	15.495	1	76550			24997	5352	16543	16604	25336	25336					0.058114939002507526
LPDTLKVTY	9	Unmodified	_LPDTLKVTY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2974243164062	2	525.297507	1048.58046	1.7747	0.00093222	-1.0732	-0.00056374	0.70148	0.00036849	525.2966075714345	39.224	0.38388	39.224	38.952	39.336	0					32	13	3	0	0	0	0.047855	2	15400	15382;15400		96.034	29.604	1	593570			24998	5352	16543	16604	25337;25338	25338					0.058114939002507526
LPDTLKVTY	9	Unmodified	_LPDTLKVTY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2978515625	2	525.297507	1048.58046	0.56583	0.00029723	0.58537	0.00030749	1.1512	0.00060472	525.2977054140418	39.138	0.61159	39.138	38.792	39.404	0					32	13	4	0	0	0	0.019258	1	15385	15385		123.21	56.779	1	824500			24999	5352	16543	16604	25339	25339					0.058114939002507526
LPDTLKVTY	9	Unmodified	_LPDTLKVTY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.297607421875	2	525.297507	1048.58046	1.6269	0.00085461	-1.0822	-0.00056846	0.54474	0.00028615	525.2968502162076	39.164	0.56701	39.164	38.871	39.438	0					26	12	3	0	0	0	0.037712	1	15422	15422		101.46	31.832	1	1744500			25000	5352	16543	16604	25340	25340					0.058114939002507526
LPDTLKVTY	9	Unmodified	_LPDTLKVTY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2974243164062	2	525.297507	1048.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.171	1	39.171	38.671	39.671	0								0	0	0	0.20646	1	15459	15459		50.034	7.6374	1				25001	5352	16543	16604	25341	25341					0.058114939002507526
LPDTRSEAY	9	Unmodified	_LPDTRSEAY_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000129315|O60563-2|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2568359375	2	526.256371	1050.49819	0.099756	5.2497E-05	-0.75536	-0.00039751	-0.6556	-0.00034501	526.2556041915042	26.666	0.52246	26.666	26.564	27.086	0					16	12	2	0	0	0	0.15163	1	9259	9259		67.494	17.958	1	399760			25002	3591	16544	16605	25342	25342					-0.025040281787141794
LPEAGTTRTF	10	Unmodified	_LPEAGTTRTF_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;TACC2|p.E1974Rfs*22|1|0.37|ENSG00000138162|chr10:122195118-122195119|-/C|frameshift_variant	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7885131835938	2	546.787838	1091.56112	1.8572	0.0010155	-1.2599	-0.00068891	0.59726	0.00032658	546.787657442652	30.347	0.17495	30.347	30.284	30.458	0					12	4	4	0	0	0	0.23114	1	10958	10958		63.534	17.562	1	125720			25003	4235	16545	16606	25343	25343					0.01900537609321873
LPEAGTTRTF	10	Unmodified	_LPEAGTTRTF_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;TACC2|p.E1974Rfs*22|1|0.37|ENSG00000138162|chr10:122195118-122195119|-/C|frameshift_variant	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7882080078125	2	546.787838	1091.56112	0.54473	0.00029785	-0.34969	-0.0001912	0.19505	0.00010665	546.7879344968853	30.301	0.16245	30.301	30.197	30.359	0					6	3	2	0	0	0	0.12266	1	11215	11215		99.013	44.237	1	196050			25004	4235	16545	16606	25344	25344					0.01900537609321873
LPEESAGLGG	10	Unmodified	_LPEESAGLGG_					0	0	0			REV__ENSG00000168806|ENST00000305641|LCMT2	REV__ENSG00000168806|ENST00000305641|LCMT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.23297119140625	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.458	1	43.458	42.958	43.958	0								0	0	0	0.39244	1	17390	17390		32.812	1.2335	1		+		25005	16279	16546	16607	25345	25345					-0.01691102098743613
LPEFTKSEY	9	Unmodified	_LPEFTKSEY_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.276611328125	2	557.276772	1112.53899	1.2289	0.00068481	-0.42145	-0.00023486	0.80741	0.00044995	557.2764018123601	35.971	0.31053	35.971	35.737	36.047	0					14	6	3	0	0	0	0.12834	1	13911	13911		72.879	11.907	1	151860			25006	2866	16547	16608	25346	25346					-0.01277686859066307
LPEFTKSEY	9	Unmodified	_LPEFTKSEY_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2771606445312	2	557.276772	1112.53899	1.8241	0.0010165	-1.4755	-0.00082228	0.34859	0.00019426	557.2759037566923	35.971	0.36082	35.971	35.721	36.081	0					13	7	3	0	0	0	0.24334	1	13952	13952		56.434	15.861	1	243130			25007	2866	16547	16608	25347	25347					-0.01277686859066307
LPEGDALRY	9	Unmodified	_LPEGDALRY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2693481445312	2	517.269281	1032.52401	0.22433	0.00011604	-0.9171	-0.00047439	-0.69276	-0.00035834	517.2696848468306	34.776	0.2618	34.776	34.635	34.897	0					13	5	3	0	0	0	0.078509	1	13336	13336		85.161	28.44	1	80808			25008	3021	16548	16609	25348	25348					0.00904866063569898
LPEHVSQL	8	Unmodified	_LPEHVSQL_					0	0	0			REV__nc|ENSG00000113273|P15848-2|ARSB	REV__nc|ENSG00000113273|P15848-2|ARSB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7529602050781	2	461.753267	921.491981	-1.1436	-0.00052806	1.4067	0.00064955	0.26311	0.00012149	461.7538717443145	32.488	0.17215	32.488	32.401	32.573	0					8	6	2	0	0	0	0.59773	1	10845	10845		49.442	3.4896	1	105070	+		25009	14032	16549	16610	25349	25349					0.028094983804294316
LPEKGVAAL	9	Unmodified	_LPEKGVAAL_					0	0	0		TRIM2|p.V492*|1|0.15|ENSG00000109654|chr4:153315525-153315525|G/-|frameshift_variant;nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	TRIM2|p.V492*|1|0.15|ENSG00000109654|chr4:153315525-153315525|G/-|frameshift_variant	TRIM2|p.V492*|1|0.15|ENSG00000109654|chr4:153315525-153315525|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2735595703125	2	449.273835	896.533118	-0.093337	-4.1934E-05	-0.54835	-0.00024636	-0.64168	-0.00028829	449.27359203192026	30.872	0.508	30.872	30.694	31.202	0					19	11	2	0	0	0	0.047412	1	11577	11577		96.19	22.216	1	166210			25010	2582	16550	16611	25350	25350					0.08071259419898524
LPERTVIQ	8	Unmodified	_LPERTVIQ_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;MAN2A2|p.V832Rfs*6|1|0.43|ENSG00000196547|chr15:90912894-90912895|-/C|frameshift_variant;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560505.1_1_15:91454331-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.28216552734375	2	478.282192	954.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.221	1	27.221	26.721	27.721	0								0	0	0	1.7419	1	8876	8876		57.811	1.0902	1				25011	7378	16551	16612	25351	25351					0.07073760305854648
LPESTHVEF	9	Unmodified	_LPESTHVEF_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.76220703125	2	529.761289	1057.50803	1.6329	0.00086503	0.17738	9.3968E-05	1.8102	0.00095899	529.7614857981778	35.424	0.42385	35.424	35.162	35.586	0					17	8	3	0	0	0	0.1115	1	13688	13688		76.774	21.27	1	559330			25012	5924	16552	16613	25352	25352					-0.018428401733444844
LPEWNRLS	8	Unmodified	_LPEWNRLS_					0	0	0			REV__ENST00000556356.1_1_12:57598740-57602363:+|nuORF	REV__ENST00000556356.1_1_12:57598740-57602363:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7720947265625	2	507.771991	1013.52943	0.089299	4.5344E-05	0.13438	6.8232E-05	0.22368	0.00011358	507.7721655290698	32.545	0.4453	32.545	32.417	32.862	0					21	13	2	0	0	0	0.52345	1	11339	11339		57.811	57.811	1	180700	+		25013	20253	16553	16614	25353	25353					0.023205896460467557
LPFAARAL	8	Unmodified	_LPFAARAL_					0	0	0		ENST00000312916.11_1_5:76326323-76326545:+|nuORF	ENST00000312916.11_1_5:76326323-76326545:+|nuORF	ENST00000312916.11_1_5:76326323-76326545:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7651672363281	2	429.763438	857.512323	2.5125	0.0010798	0.7492	0.00032198	3.2617	0.0014017	429.76385127673865	28.632	0.31732	28.632	28.526	28.843	0					17	6	4	0	0	0	0.72892	1	10388	10388		29.842	1.5873	1	2215100			25014	8565	16554	16615	25354	25354					0.07786713830898861
LPFGKVTNL	9	Unmodified	_LPFGKVTNL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.79522705078125	2	494.794935	987.575317	-0.64567	-0.00031948	0.42843	0.00021198	-0.21725	-0.00010749	494.7951105117143	41.697	0.27783	41.697	41.49	41.768	0					10	7	2	0	0	0	0.28504	1	16592	16592		52.937	0	1	270530			25015	1048;3106	16555	16616	25355	25355					0.08103234828263339
LPFKEPGLS	9	Unmodified	_LPFKEPGLS_					0	0	0			REV__ENSG00000185666|ENST00000358763|SYN3	REV__ENSG00000185666|ENST00000358763|SYN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2793273925781	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.538	1	40.538	40.038	41.038	0								0	0	0	0.1633	1	16103	16103		56.721	1.2168	1		+		25016	17041	16556	16617	25356	25356					0.049872420743326984
LPFSSHTY	8	Unmodified	_LPFSSHTY_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34;FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.231689453125	2	476.232168	950.449782	0.35251	0.00016788	-0.75959	-0.00036174	-0.40708	-0.00019386	476.2318561434583	33.801	0.23308	33.801	33.698	33.931	0					10	6	2	0	0	0	0.25001	1	12516	12516		101.21	58.737	1	190640			25017	6745	16557	16618	25357	25357					-0.02742477027948098
LPFSSHTY	8	Unmodified	_LPFSSHTY_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34;FBXO34|p.L485Cfs*13|1|0.39|ENSG00000178974|chr14:55351837-55351837|T/-|frameshift_variant	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2319030761719	2	476.232168	950.449782	-0.62284	-0.00029661	1.204	0.00057337	0.58114	0.00027676	476.2329211215709	33.708	0.46737	33.708	33.65	34.118	0					15	10	2	0	0	0	0.25001	1	12851	12851		101.21	29.834	1	301590			25018	6745	16557	16618	25358	25358					-0.02742477027948098
LPFYLHDLK	9	Unmodified	_LPFYLHDLK_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.5499267578125	3	382.54997	1144.62808	0.61417	0.00023495	-1.9095	-0.00073048	-1.2953	-0.00049553	382.549769272588	37.527	0.20659	37.527	37.45	37.657	0					7	4	2	0	0	0	0.2873	1	14709	14709		58.23	17.452	1	79409			25019	4074	16558	16619	25359	25359					0.06155192891083061
LPGAGLPHS	9	Unmodified	_LPGAGLPHS_					0	0	0		ENST00000360737.4_1_22:46493806-46505887:+|nuORF	ENST00000360737.4_1_22:46493806-46505887:+|nuORF	ENST00000360737.4_1_22:46493806-46505887:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.7348327636719	2	424.734877	847.455202	1.2097	0.0005138	-0.7102	-0.00030165	0.49948	0.00021215	424.73445031051045	26.514	0.2501	26.514	26.398	26.649	0					12	8	2	0	0	0	0.23186	1	8055	8055		57.811	11.859	1	47041			25020	8867	16559	16620	25360	25360					0.02537246554527428
LPGAGVVTAL	10	Unmodified	_LPGAGVVTAL_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.27386474609375	2	449.273835	896.533118	-0.39658	-0.00017817	0.19697	8.8495E-05	-0.19961	-8.9678E-05	449.2739086581272	31.028	0.56128	31.028	30.68	31.241	0					28	11	3	0	0	0	0.33577	1	11429	11429		63.306	4.5243	1	364990	+		25021	15801	16560	16621	25361	25361					0.08071259419898524
LPGALAAQEV	10	Unmodified	_LPGALAAQEV_					0	0	0		ENSG00000173762|ENST00000312648|CD7;ENST00000581744.1_1_17:80274441-80275395:-|nuORF	ENSG00000173762|ENST00000312648|CD7	ENSG00000173762|ENST00000312648|CD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.77362060546875	2	484.7742	967.533846	-0.64145	-0.00031096	0.2773	0.00013443	-0.36415	-0.00017653	484.7742161210003	40.048	0.24037	40.048	39.98	40.221	0					17	8	3	0	0	0	0.44469	1	15787	15787		51.335	1.8939	1	207830			25022	6449	16561	16622	25362	25362					0.04878054068956317
LPGDHEYP	8	Unmodified	_LPGDHEYP_					0	0	0		ENST00000509857.5_1_4:184585182-184595983:+|nuORF;TRAPPC11|p.T366Pfs*9|1|0.25|ENSG00000168538|chr4:183680246-183680246|A/-|frameshift_variant;nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;ENST00000504526.1_1_4:184580477-184587420:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	ENST00000509857.5_1_4:184585182-184595983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2159118652344	2	464.213975	926.413397	0.092708	4.3036E-05	3.6649	0.0017013	3.7576	0.0017443	464.2157913886831	22.875	0.11545	22.875	22.812	22.928	0					5	3	2	0	0	0	0.72892	1	6551	6551		29.842	4.3914	1	55274			25023	6101	16562	16623	25363	25363					-0.052753539246623404
LPGEHGIPGKQ	11	Unmodified	_LPGEHGIPGKQ_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1;COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant;COL19A1|p.G753Afs*32|1|0.15|ENSG00000082293|chr6:70156686-70156686|G/-|frameshift_variant;COL19A1|p.G807Wfs*14|1|0.34|ENSG00000082293|chr6:70165952-70165953|-/C|frameshift_variant	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.8074340820312	2	566.809105	1131.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.283	1	14.283	13.783	14.783	0								0	0	0	0.45674	1	3068	3068		10.265	9.1698	1				25024	1675	16563	16624	25364	25364					0.04311932737573443
LPGHAVVV	8	Unmodified	_LPGHAVVV_					0	0	0		ENST00000606788.5_1_20:44518901-44519711:+|nuORF	ENST00000606788.5_1_20:44518901-44519711:+|nuORF	ENST00000606788.5_1_20:44518901-44519711:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.2420654296875	2	396.242338	790.470124	-0.26225	-0.00010392	0.095811	3.7964E-05	-0.16644	-6.5952E-05	396.24229142541594	25.581	0.34237	25.581	25.362	25.704	0					16	8	3	0	0	0	0.77013	1	8786	8786		24.504	7.799	1	370320			25025	11084	16564	16625	25365	25365					0.06650738422524682
LPGKTYSF	8	Unmodified	_LPGKTYSF_					0	0	0		ENSG00000102531|ENST00000492622|FNDC3A;nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;FNDC3A|p.R736C|1|0.09|ENSG00000102531|chr13:49191364-49191364|C/T|missense_variant	ENSG00000102531|ENST00000492622|FNDC3A	ENSG00000102531|ENST00000492622|FNDC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7449645996094	2	456.744911	911.475269	0.76076	0.00034748	-0.032923	-1.5037E-05	0.72784	0.00033244	456.74441840498577	32.889	0.36189	32.889	32.668	33.03	0					21	9	3	0	0	0	0.61938	1	12103	12103		45.952	1.4209	1	116970			25026	2175	16565	16626	25366	25366					0.01598997494465948
LPGKTYSF	8	Unmodified	_LPGKTYSF_					0	0	0		ENSG00000102531|ENST00000492622|FNDC3A;nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;FNDC3A|p.R736C|1|0.09|ENSG00000102531|chr13:49191364-49191364|C/T|missense_variant	ENSG00000102531|ENST00000492622|FNDC3A	ENSG00000102531|ENST00000492622|FNDC3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7443542480469	2	456.744911	911.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.139	1	33.139	32.639	33.639	0								0	0	0	1.7419	1	12661	12661		47.916	0	1				25027	2175	16565	16626	25367	25367					0.01598997494465948
LPGKTYSF	8	Unmodified	_LPGKTYSF_					0	0	0		ENSG00000102531|ENST00000492622|FNDC3A;nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;FNDC3A|p.R736C|1|0.09|ENSG00000102531|chr13:49191364-49191364|C/T|missense_variant	ENSG00000102531|ENST00000492622|FNDC3A	ENSG00000102531|ENST00000492622|FNDC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7444152832031	2	456.744911	911.475269	-0.43235	-0.00019748	-0.0099649	-4.5514E-06	-0.44232	-0.00020203	456.74468179584176	32.78	0.46111	32.78	32.573	33.034	0					14	9	2	0	0	0	0.69548	1	12401	12401		34.173	2.2177	1	202520			25028	2175	16565	16626	25368	25368					0.01598997494465948
LPGLALVHAGQ	11	Unmodified	_LPGLALVHAGQ_					0	0	0			REV__nc|ENSG00000129566|Q99973-2|TEP1	REV__nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.2133483886719	3	359.213469	1074.61858	0.44766	0.00016081	-0.038284	-1.3752E-05	0.40938	0.00014705	359.21344240861833	26.982	0.17491	26.982	26.879	27.054	0					10	5	3	0	0	0	0.64626	1	8258	8258		32.751	1.1163	1	293540	+		25029	14551	16566	16627	25369	25369					0.0842542460554796
LPGQDEPSLTF	11	Unmodified	_LPGQDEPSLTF_					0	0	0			REV__nc|ENSG00000154639|P78310-4|CXADR	REV__nc|ENSG00000154639|P78310-4|CXADR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.2997436523438	2	602.298236	1202.58192	3.0746	0.0018518	-0.53692	-0.00032339	2.5377	0.0015284	602.2979759658198	33.042	0.4901	33.042	32.892	33.382	0					13	10	2	0	0	0	0.69524	1	12527	12527		28.081	1.3886	1	909780	+		25030	12655	16567	16628	25370	25370					-0.011269168016724507
LPGRPHHGPG	10	Unmodified	_LPGRPHHGPG_					0	0	0			REV__TNK2|p.L888Cfs*83|1|0.6|ENSG00000061938|chr3:195867591-195867591|G/-|frameshift_variant	REV__TNK2|p.L888Cfs*83|1|0.6|ENSG00000061938|chr3:195867591-195867591|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.77490234375	2	512.7754	1023.53625	-0.27902	-0.00014308	-0.63033	-0.00032322	-0.90936	-0.0004663	512.7749779829978	29.516	0.307	29.516	29.404	29.711	0					27	11	4	0	0	0	0.47621	1	9597	9597		47.916	3.5384	1	405130	+		25031	21657	16568	16629	25371	25371					0.02541947317274662
LPGRTGSAEQF	11	Unmodified	_LPGRTGSAEQF_					0	0	0			REV__ENSG00000136114|ENST00000258613|THSD1	REV__ENSG00000136114|ENST00000258613|THSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.7985229492188	2	581.796195	1161.57784	3.2362	0.0018828	0.97452	0.00056697	4.2107	0.0024498	581.7966885339573	39.726	0.32653	39.726	39.63	39.957	0					14	7	3	0	0	0	0.32407	1	15712	15712		59.931	2.1195	1	509490	+		25032	14849	16569	16630	25372	25372					0.0035103849527331477
LPGTQELGALT	11	Unmodified	_LPGTQELGALT_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3038940429688	2	550.303321	1098.59209	0.18986	0.00010448	0.3655	0.00020114	0.55536	0.00030562	550.3034200843167	27.79	0.26516	27.79	27.682	27.947	0					15	5	4	0	0	0	0.096315	1	10095	10095		90.601	15.558	1	854190	+		25033	13516	16570	16631	25373	25373					0.04673690923573304
LPGTQELGALT	11	Unmodified	_LPGTQELGALT_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3049926757812	2	550.303321	1098.59209	-1.4161	-0.00077931	3.1164	0.0017149	1.7002	0.00093563	550.304831821005	27.611	0.22078	27.611	27.522	27.743	0					10	5	3	0	0	0	0.063642	1	9063	9063		98.582	18.127	1	273490	+		25034	13516	16570	16631	25374	25374					0.04673690923573304
LPHAPGVQM	9	Unmodified	_LPHAPGVQM_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2495422363281	2	475.249837	948.485122	0.61993	0.00029462	-1.2241	-0.00058176	-0.60419	-0.00028714	475.24940369609436	33.018	0.27477	33.018	32.834	33.109	0					17	6	3	0	0	0	0.14734	1	12586	12586		68.485	2.6815	1	519380			25035	2984;7383	16571	16632	25375	25375					0.008818622282092292
LPHIITMY	8	Unmodified	_LPHIITMY_					0	0	0			REV__TACR1|p.A133T|1|0.09|ENSG00000115353|chr2:75120761-75120761|C/T|missense_variant	REV__TACR1|p.A133T|1|0.09|ENSG00000115353|chr2:75120761-75120761|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7584533691406	2	494.270238	986.525924	2.7984	0.0013831	-0.12516	-6.1861E-05	2.6732	0.0013213	494.2701351061992	30.857	0.46039	30.857	30.747	31.207	0					15	9	3	0	0	0	0.68754	1	11534	11534		35.201	4.6971	1	1352400	+		25036	21618	16572	16633	25376	25376					0.03212203547820991
LPHIRCSL	8	Unmodified	_LPHIRCSL_					0	0	0		ENST00000550078.2_2_1:203764956-203765340:+|nuORF	ENST00000550078.2_2_1:203764956-203765340:+|nuORF	ENST00000550078.2_2_1:203764956-203765340:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7684631347656	2	469.765655	937.516756	0.20076	9.431E-05	0.11236	5.2785E-05	0.31312	0.00014709	469.76617688369885	37.769	0.24738	37.769	37.669	37.916	0					16	8	3	0	0	0	0.60719	1	14324	14324		47.916	0	1	257470			25037	10611	16573	16634	25377	25377					0.04549854982155921
LPHPWRNE	8	Unmodified	_LPHPWRNE_					0	0	0			REV__ENST00000346693.8_1_X:149935499-149935694:-|nuORF	REV__ENST00000346693.8_1_X:149935499-149935694:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7706298828125	2	524.769783	1047.52501	1.4168	0.00074349	-0.006483	-3.4021E-06	1.4103	0.00074008	524.7697500657813	29.295	0.086859	29.295	29.236	29.323	0					5	3	2	0	0	0	0.57802	1	9238	9238		52.299	2.8576	1	44915	+		25038	18484	16574	16635	25378	25378					0.0031512522314187663
LPHQPLATY	9	Unmodified	_LPHQPLATY_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2825927734375	2	520.282192	1038.54983	0.068484	3.5631E-05	0.42743	0.00022238	0.49591	0.00025801	520.2823409567299	32.378	0.37029	32.378	32.212	32.583	0					31	9	4	0	0	0	0.085655	1	11834	11834		87.754	35.455	1	2814900			25039	2642	16575	16636	25379	25379					0.032097603058673485
LPHQPLATY	9	Unmodified	_LPHQPLATY_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2821044921875	2	520.282192	1038.54983	-0.23216	-0.00012079	-1.8416	-0.00095817	-2.0738	-0.001079	520.2806042057305	32.351	2.7609	32.351	30.92	33.681	0					97	63	3	0	0	0	0.026538	1	12296	12296		120.62	17.848	1	665320			25040	2642	16575	16636	25380	25380					0.032097603058673485
LPHRGPALLGP	11	Unmodified	_LPHRGPALLGP_					0	0	0		ENST00000345506.8_1_17:40440529-40441542:+|nuORF	ENST00000345506.8_1_17:40440529-40441542:+|nuORF	ENST00000345506.8_1_17:40440529-40441542:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.3375244140625	2	564.337833	1126.66111	-1.0734	-0.00060577	0.33918	0.00019141	-0.73423	-0.00041435	564.3379198676312	33.739	2.2056	33.739	33.628	35.834	0					232	72	5	0	0	0	0.66915	2	12007	12007;12164		20.947	0	1	7060700			25041	8761	16576	16637	25381;25382	25381					0.10284819733806216
LPHSAMPV	8	Unmodified	_LPHSAMPV_					0	0	0		ENST00000486360.1_1_1:203045416-203045515:+|nuORF	ENST00000486360.1_1_1:203045416-203045515:+|nuORF	ENST00000486360.1_1_1:203045416-203045515:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.2253112792969	2	426.225831	850.437109	-0.22435	-9.5623E-05	-0.76671	-0.00032679	-0.99106	-0.00042241	426.22546619211846	28.897	0.32103	28.897	28.723	29.044	0					15	11	2	0	0	0	0.72892	1	9076	9076		29.842	1.5873	1	66476			25042	10021	16577	16638	25383	25383					0.005907883081590626
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.76873779296875	2	469.768917	937.523281	-0.93676	-0.00044006	0.54631	0.00025664	-0.39044	-0.00018342	469.7691307324261	32.674	0.35806	32.674	32.476	32.834	0					20	9	3	0	0	0	0.2873	1	12411	12411		51.335	0	1	433730			25043	1271	16578	16639	25384	25384					0.052020714145328384
LPHVINPVES	10	Unmodified	_LPHVINPVES_					0	0	0		ENST00000484580.6_1_17:26883511-26887327:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000484580.6_1_17:26883511-26887327:-|nuORF	ENST00000484580.6_1_17:26883511-26887327:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.8056640625	2	552.806031	1103.59751	0.62049	0.00034301	-0.48626	-0.00026881	0.13423	7.4204E-05	552.805567717481	37.081	0.47045	37.081	36.854	37.324	0					24	13	3	0	0	0	0.48255	1	14005	14005		51.193	9.7661	1	156700			25044	1760	16579	16640	25385	25385					0.04985414506040797
LPHVTASF	8	Unmodified	_LPHVTASF_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.2372741699219	2	436.237253	870.459953	0.78052	0.00034049	-0.82147	-0.00035835	-0.040947	-1.7863E-05	436.2368541298734	37.031	0.38972	37.031	36.705	37.095	0					22	12	2	0	0	0	0.29779	1	14451	14451		83.287	11.909	1	162680			25045	11716	16580	16641	25386	25386					0.019541306972769235
LPHVTASF	8	Unmodified	_LPHVTASF_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.23699951171875	2	436.237253	870.459953	0.7562	0.00032988	-1.6407	-0.00071574	-0.8845	-0.00038585	436.23665692474646	36.982	0.6087	36.982	36.562	37.171	0					24	12	3	0	0	0	0.29779	1	14406	14406		83.287	20.309	1	160840			25046	11716	16580	16641	25387	25387					0.019541306972769235
LPHWARLF	8	Unmodified	_LPHWARLF_					0	0	0			REV__MATK|p.P36Lfs*125|2|0.34|ENSG00000007264|chr19:3784850-3784850|G/-|frameshift_variant	REV__MATK|p.P36Lfs*125|2|0.34|ENSG00000007264|chr19:3784850-3784850|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3013305664062	2	520.295436	1038.57632	3.3706	0.0017537	4.4326	0.0023063	7.8032	0.00406	520.7979395817017	44.175	0.24458	44.175	44.044	44.289	0					16	10	2	0	0	0	0.61938	1	17676	17676		35.201	2.3883	1	72966	+		25047	20869	16581	16642	25388	25388					0.058574939878326404
LPIEAPIRM	9	Oxidation (M)	_LPIEAPIRM(Oxidation (M))_		LPIEAPIRM(1)		LPIEAPIRM(99)	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.3001098632812	2	528.299527	1054.5845	2.003	0.0010582	-1.5008	-0.00079287	0.50224	0.00026534	528.2986277461671	35.014	0.21511	35.014	34.927	35.142	0					11	5	3	0	0	0	0.0406	1	13085	13085		98.629	40.818	1	143850			25048	7591	16582	16643	25389	25389		304			0.05939260122295309
LPIEAPIRM	9	Oxidation (M)	_LPIEAPIRM(Oxidation (M))_		LPIEAPIRM(1)		LPIEAPIRM(53)	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.298828125	2	528.299527	1054.5845	0.91788	0.00048491	0.01646	8.6959E-06	0.93434	0.00049361	528.2994033337324	35.007	0.19043	35.007	34.899	35.089	0					10	5	2	0	0	0	0.27249	1	13531	13531		52.937	8.8199	1	114580			25049	7591	16582	16643	25390	25390		304			0.05939260122295309
LPIEAPIRM	9	Unmodified	_LPIEAPIRM_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3032836914062	2	520.30207	1038.58959	2.0918	0.0010884	-0.8573	-0.00044606	1.2345	0.0006423	520.8033702725875	43.162	0.1471	43.162	43.099	43.246	0					11	8	2	0	0	0	0.087861	1	16307	16307		82.241	54.358	1	67220			25050	7591	16582	16644	25391	25391					0.07183563984926877
LPIEAPIRM	9	Unmodified	_LPIEAPIRM_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3031616210938	2	520.30207	1038.58959	1.1047	0.00057475	0.92983	0.00048379	2.0345	0.0010585	520.3025600789537	43.155	0.20799	43.155	43.067	43.275	0					20	10	3	0	0	0	0.17854	1	16903	16903		64.207	16.292	1	186890			25051	7591	16582	16644	25392	25392					0.07183563984926877
LPIGATVNM	9	Unmodified	_LPIGATVNM_					0	0	0		nc|ENSG00000115902|P43007-2|SLC1A4;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5;ENSG00000115902|ENST00000234256|SLC1A4;ENSG00000105281|ENST00000542575|SLC1A5	nc|ENSG00000115902|P43007-2|SLC1A4	nc|ENSG00000115902|P43007-2|SLC1A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.25225830078125	2	458.252046	914.489538	-0.43972	-0.0002015	0.43714	0.00020032	-0.0025722	-1.1787E-06	458.25220699390485	43.341	0.26568	43.341	43.247	43.512	0					13	10	2	0	0	0	0.37197	1	17348	17348		44.117	5.3107	1	54982			25052	2342	16583	16645	25393	25393					0.028873266511027396
LPIGDVATQY	10	Unmodified	_LPIGDVATQY_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7857055664062	2	538.784764	1075.55498	2.0199	0.0010883	0.10593	5.7073E-05	2.1258	0.0011453	538.7850337582641	44.131	0.10444	44.131	44.076	44.18	0					11	6	2	0	0	0	0.31613	1	16576	16576		65.465	15.929	1	81325			25053	4007	16584	16646	25394	25394					0.020220193778186513
LPILIADS	8	Unmodified	_LPILIADS_					0	0	0		ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.25347900390625	2	421.255111	840.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.394	1	48.394	47.894	48.894	0								0	0	0	1.7419	1	14719	14719		21.702	1.2205	1				25054	2128	16585	16647	25395	25395					0.06904168154278523
LPIYSAMTI	9	Unmodified	_LPIYSAMTI_					0	0	0			REV__ENSG00000165996|ENST00000361271|HACD1	REV__ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.77667236328125	2	504.775354	1007.53615	0.035789	1.8065E-05	2.4711	0.0012474	2.5069	0.0012654	504.77647139588834	26.268	0.13986	26.268	26.179	26.319	0					5	3	2	0	0	0	0.49003	1	8444	8444		33.516	4.3455	1	39177	+		25055	16081	16586	16648	25396	25396					0.03268766482403862
LPKEQKEQI	9	Unmodified	_LPKEQKEQI_					0	0	0			REV__ZNF658|p.R91Q|1|0.1|ENSG00000274349|chr9:66917838-66917838|G/A|missense_variant	REV__ZNF658|p.R91Q|1|0.1|ENSG00000274349|chr9:66917838-66917838|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.8189697265625	2	556.819138	1111.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.111	1	27.111	26.611	27.611	0								0	0	0	0.18645	1	8320	8320		52.937	0	1		+		25056	22332	16587	16649	25397	25397					0.07237683677522
LPKETEHS	8	Unmodified	_LPKETEHS_					0	0	0		CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7409973144531	2	470.740357	939.46616	-0.0021694	-1.0212E-06	-0.093828	-4.4169E-05	-0.095997	-4.519E-05	470.740470815463	27.616	0.121	27.616	27.533	27.654	0					6	4	2	0	0	0	0.54629	1	8528	8528		55.504	0.72789	1	47123			25057	485	16588	16650	25398	25398					-0.005993958618546458
LPKLCHAW	8	Carbamidomethyl (C)	_LPKLC(Carbamidomethyl (C))HAW_	LPKLC(1)HAW		LPKLC(47)HAW		0	1	0		ENSG00000141371|ENST00000269127|CHCT1	ENSG00000141371|ENST00000269127|CHCT1	ENSG00000141371|ENST00000269127|CHCT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7747802734375	2	512.77348	1023.53241	1.2735	0.00065301	1.1934	0.00061196	2.4669	0.001265	512.7740169132287	29.758	0.40868	29.758	29.65	30.059	0					21	8	4	0	0	0	0.61433	1	11043	11043		46.766	6.1938	1	2497600			25058	4439	16589	16651	25399	25399	186				0.021581414991942438
LPKNDLITY	9	Unmodified	_LPKNDLITY_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8034057617188	2	538.802957	1075.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.86	1	37.86	37.36	38.36	0								0	0	0	0.18645	1	14379	14379		52.937	3.4952	1				25059	1868	16590	16652	25400	25400					0.05658896274530889
LPKNDLITY	9	Unmodified	_LPKNDLITY_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.8034057617188	2	538.802957	1075.59136	0.30071	0.00016202	0.5228	0.00028169	0.82351	0.00044371	538.8031103594375	37.85	0.1116	37.85	37.763	37.874	0					7	3	3	0	0	0	0.25716	1	14814	14814		54.776	0	1	305130			25060	1868	16590	16652	25401	25401					0.05658896274530889
LPKRHSEPVT	10	Unmodified	_LPKRHSEPVT_					0	0	0			REV__CDR2|p.L296P|1|0.21|ENSG00000140743|chr16:22347443-22347443|A/G|missense_variant	REV__CDR2|p.L296P|1|0.21|ENSG00000140743|chr16:22347443-22347443|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.3302612304688	2	582.330205	1162.64586	-0.32046	-0.00018662	0.5653	0.00032919	0.24483	0.00014257	582.3305457959093	25.578	0.26173	25.578	25.476	25.738	0					16	5	4	0	0	0	0.44469	1	9083	9083		51.335	0	1	3440900	+		25061	12410	16591	16653	25402	25402					0.07103908145927562
LPKSVSLVSH	10	Unmodified	_LPKSVSLVSH_					0	0	0			REV__ENST00000261168.8_1_12:14654270-14654414:+|nuORF	REV__ENST00000261168.8_1_12:14654270-14654414:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.81689453125	2	533.816399	1065.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.823	1	37.823	37.323	38.323	0								0	0	0	0.28704	1	14820	14820		52.937	1.6012	1		+		25062	18011	16592	16654	25403	25403					0.08806004885718721
LPKTCDISF	9	Carbamidomethyl (C)	_LPKTC(Carbamidomethyl (C))DISF_	LPKTC(1)DISF		LPKTC(91)DISF		0	1	0		ENSG00000130725|ENST00000253023|UBE2M;ENST00000593801.1_1_19:59068052-59068513:-|nuORF	ENSG00000130725|ENST00000253023|UBE2M	ENSG00000130725|ENST00000253023|UBE2M	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7741088867188	2	540.773342	1079.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.295	1	38.295	37.795	38.795	0								0	0	0	0.040385	1	14544	14544		90.601	33.88	1				25063	3664	16593	16655	25404	25404	155				-0.004453230113085738
LPKTIHTTP	9	Unmodified	_LPKTIHTTP_					0	0	0		MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.657	1	49.657	49.157	50.157	0								0	0	0	0.31623	1	18669	18669		24.519	1.9395	1				25064	6840	16594	16656	25405	25405					0.0781033333993264
LPKTQNGEIV	10	Unmodified	_LPKTQNGEIV_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B;ENST00000552328.1_1_12:51079642-51080480:+|nuORF	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8119506835938	2	549.811313	1097.60807	1.8374	0.0010102	-1.3786	-0.00075797	0.45883	0.00025227	549.8105890732363	28.937	0.3335	28.937	28.807	29.141	0					15	8	3	0	0	0	0.59277	1	10291	10291		35.152	2.4015	1	270290			25065	789	16595	16657	25406	25406					0.06317397160455585
LPKVVYSPR	9	Unmodified	_LPKVVYSPR_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8206176757812	2	529.821484	1057.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.435	1	27.435	26.935	27.935	0								0	0	0	0.3368	1	8741	8741		27.882	2.3082	1		+		25066	13017	16596	16658	25407	25407					0.10190612610927019
LPLAAQGK	8	Unmodified	_LPLAAQGK_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.24737548828125	2	399.247621	796.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.282	1	34.282	33.782	34.782	0								0	0	0	1.7419	1	13125	13125		28.254	0	1				25067	2833	16597	16659	25408	25408					0.07430721076946156
LPLALQEKY	9	Unmodified	_LPLALQEKY_					0	0	0		ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.31689453125	2	537.813325	1073.6121	2.0035	0.0010775	-2.707	-0.0014559	-0.70346	-0.00037833	537.8108509958768	27.276	0.57504	27.276	27.036	27.611	0					35	11	5	0	0	0	0.39215	1	9695	9695		44.531	5.2782	1	2488300			25068	3952	16598	16660	25409	25409					0.07823486654183398
LPLARLAAV	9	Unmodified	_LPLARLAAV_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.30615234375	2	462.30547	922.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.136	1	42.136	41.636	42.636	0								0	0	0	0.35507	1	15980	15980		24.203	2.2429	1				25069	11716	16599	16661	25410	25410					0.13199244927795917
LPLARLAAV	9	Unmodified	_LPLARLAAV_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.3056945800781	2	462.30547	922.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.073	1	42.073	41.573	42.573	0								0	0	0	0.35507	1	16531	16531		24.203	5.8783	1				25070	11716	16599	16661	25411	25411					0.13199244927795917
LPLCCDRPGDE	11	Unmodified	_LPLCCDRPGDE_					0	0	0			REV__ENST00000327359.7_1_14:105695225-105781678:-|nuORF	REV__ENST00000327359.7_1_14:105695225-105781678:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.2682495117188	2	609.268098	1216.52164	2.9204	0.0017793	-2.8934	-0.0017628	0.02703	1.6469E-05	609.2664708918105	27.982	0.36478	27.982	27.829	28.194	0					17	7	4	0	0	0	0.25663	1	10097	10097		67.494	5.3863	1	850200	+		25071	18361	16600	16662	25412	25412					-0.07795673728082875
LPLEPCRVL	9	Unmodified	_LPLEPCRVL_					0	0	0		ENST00000262428.4_1_16:84600198-84600339:-|nuORF	ENST00000262428.4_1_16:84600198-84600339:-|nuORF	ENST00000262428.4_1_16:84600198-84600339:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3026733398438	2	520.30207	1038.58959	0.33369	0.00017362	0.28737	0.00014952	0.62106	0.00032314	520.3023245840033	43.127	0.20877	43.127	42.994	43.203	0					8	5	2	0	0	0	0.24095	1	17225	17225		56.721	0	1	113110			25072	8307	16601	16663	25413	25413					0.07183563984926877
LPLEQSKSF	9	Unmodified	_LPLEQSKSF_					0	0	0		CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant;CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENSG00000164309|ENST00000446378|CMYA5	CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant	CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7869873046875	2	524.787307	1047.56006	1.8593	0.00097573	-1.2706	-0.00066682	0.58864	0.00030891	524.7863500848679	29.613	0.21863	29.613	29.527	29.745	0					9	5	3	0	0	0	0.21263	1	10613	10613		60.118	0	1	119360			25073	566	16602	16664	25414	25414					0.038183232404207956
LPLGDPSVVPT	11	Unmodified	_LPLGDPSVVPT_					0	0	0			REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.5415344238281	3	365.541252	1093.60193	1.2299	0.00044958	-0.0837	-3.0596E-05	1.1462	0.00041899	365.5412339653483	28.15	0.63508	28.15	27.897	28.532	0					47	13	4	0	0	0	0.72154	1	10265	10265		17.167	0	1	1034700	+		25074	20679	16603	16665	25415	25415					0.058868789289590495
LPLKGPAR	8	Unmodified	_LPLKGPAR_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.2771301269531	2	426.276712	850.538872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.641	1	28.641	28.141	29.141	0								0	0	0	1.7419	1	9254	9254		21.702	0	1		+		25075	17830	16604	16666	25416	25416					0.10762402722230036
LPLLPGAQAGA	11	Unmodified	_LPLLPGAQAGA_					0	0	0		KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.53432	1006.58113	0.24141	8.1243E-05	-0.34792	-0.00011709	-0.10651	-3.5843E-05	336.53416805376844	24.988	1.1898	24.988	24.334	25.524	0					60	37	2	0	0	0	0.79725	1	7534	7534		14.086	0.63197	1	155190			25076	11244	16605	16667	25417	25417					0.07810333339944009
LPLPGLCS	8	Unmodified	_LPLPGLCS_					0	0	0		ENST00000229812.7_1_6:36507941-36515235:-|nuORF	ENST00000229812.7_1_6:36507941-36515235:-|nuORF	ENST00000229812.7_1_6:36507941-36515235:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.2226867675781	2	400.222757	798.430961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.562	1	16.562	16.062	17.062	0								0	0	0	1.7419	1	3793	3793		24.504	1.4673	1				25077	8198	16606	16668	25418	25418					0.02368270076635781
LPLQAGEIGEM	11	Oxidation (M)	_LPLQAGEIGEM(Oxidation (M))_		LPLQAGEIGEM(1)		LPLQAGEIGEM(43)	0	0	1		ENST00000536823.5_1_12:10853889-10856822:-|nuORF	ENST00000536823.5_1_12:10853889-10856822:-|nuORF	ENST00000536823.5_1_12:10853889-10856822:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.2943725585938	2	587.294639	1172.57472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.769	1	37.769	37.269	38.269	0								0	0	0	0.36657	1	14790	14790		42.864	10.909	1				25078	10493	16607	16669	25419	25419		418			-0.004659726737600067
LPLQANVY	8	Unmodified	_LPLQANVY_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.25775146484375	2	459.258185	916.501818	-0.44469	-0.00020423	-0.66284	-0.00030442	-1.1075	-0.00050864	459.2580676447557	42.494	0.18923	42.494	42.383	42.573	0					8	5	2	0	0	0	0.64096	1	16955	16955		42.474	5.446	1	47963			25079	2767	16608	16670	25420	25420					0.0402268638579244
LPLQRRCAD	9	Unmodified	_LPLQRRCAD_					0	0	0		ENST00000416860.2_2_1:2487365-2487509:-|nuORF	ENST00000416860.2_2_1:2487365-2487509:-|nuORF	ENST00000416860.2_2_1:2487365-2487509:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2905883789062	2	536.290025	1070.5655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.546	1	12.546	12.046	13.046	0								0	0	0	0.34845	1	2695	2695		25.574	1.3713	1				25080	9368	16609	16671	25421	25421					0.0330372355124382
LPLSHKLTEQ	10	Unmodified	_LPLSHKLTEQ_					0	0	0			REV__PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	REV__PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.2240295410156	3	389.224034	1164.65027	0.86832	0.00033797	-0.75033	-0.00029205	0.11799	4.5923E-05	389.2237460442312	16.744	0.16543	16.744	16.705	16.87	0					12	4	4	0	0	0	0.62149	1	4632	4632		31.634	1.3165	1	841110	+		25081	14274	16610	16672	25422	25422					0.07453372568852501
LPLVHMWALH	10	Unmodified	_LPLVHMWALH_					0	0	0			REV__ENST00000567020.6_2_16:2551598-2552264:+|nuORF	REV__ENST00000567020.6_2_16:2551598-2552264:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	608.8383178710938	2	608.836611	1215.65867	0.015393	9.3717E-06	2.4786	0.001509	2.4939	0.0015184	608.8375992952022	36.487	0.11722	36.487	36.428	36.545	0					4	2	2	0	0	0	0.39566	1	14200	14200		35.201	9.6267	1	48203	+		25082	20351	16611	16673	25423	25423					0.05946648004464805
LPLVRCGHP	9	Carbamidomethyl (C)	_LPLVRC(Carbamidomethyl (C))GHP_	LPLVRC(1)GHP		LPLVRC(48)GHP		0	1	0			REV__ENST00000403952.3_2_7:808720-814797:+|nuORF	REV__ENST00000403952.3_2_7:808720-814797:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7883911132812	2	524.789661	1047.56477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.358	1	29.358	28.858	29.858	0								0	0	0	0.22106	1	9256	9256		47.916	16.386	1		+		25083	18963	16612	16674	25424	25424	681				0.042889289022014054
LPLYNKTY	8	Unmodified	_LPLYNKTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.2799072265625	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.577	1	38.577	38.077	39.077	0								0	0	0	1.7419	1	12577	12577		44.117	0.49075	1		+		25084	13436	16613	16675	25425	25425					0.03883242074323334
LPMEAGLVEF	10	Unmodified	_LPMEAGLVEF_					0	0	0		nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566375.1_1_16:55583234-55585020:+|nuORF	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.280029296875	2	553.283543	1104.55253	-1.2123	-0.00067076	-3.6879	-0.0020404	-4.9002	-0.0027112	553.2815242236057	27.174	0.37254	27.174	27.041	27.414	0					14	9	2	0	0	0	0.10814	1	8860	8860		94.006	3.2298	1	114620			25085	1762	16614	16676	25426	25426					0.004438476484892817
LPMRHDLV	8	Unmodified	_LPMRHDLV_					0	0	0			REV__ENST00000432045.6_1_7:130562562-130562694:-|nuORF	REV__ENST00000432045.6_1_7:130562562-130562694:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.76983642578125	2	490.770937	979.527321	-1.2577	-0.00061723	-1.4307	-0.00070217	-2.6884	-0.0013194	490.77054765425527	35.432	0.23402	35.432	35.31	35.544	0					18	11	2	0	0	0	0.63077	1	11978	11978		33.516	0	1	230790	+		25086	19173	16615	16677	25427	25427					0.03673837636586086
LPMSEILEH	9	Unmodified	_LPMSEILEH_					0	0	0			REV__nc|ENSG00000120705|P62495-2|ETF1	REV__nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7730102539062	2	534.773342	1067.53213	0.16643	8.9005E-05	-1.6737	-0.00089507	-1.5073	-0.00080606	534.7725196252284	17.823	0.077589	17.823	17.754	17.831	0					4	2	2	0	0	0	0.61124	1	4534	4534		12.959	0.75233	1	109690	+		25087	14293	16616	16678	25428	25428					0.00106676988707477
LPNEGRNDY	9	Unmodified	_LPNEGRNDY_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2520751953125	2	539.25162	1076.48869	1.9938	0.0010752	-1.3828	-0.00074567	0.61101	0.00032949	539.2509721674265	24.138	0.22546	24.138	24.052	24.277	0					10	5	3	0	0	0	0.24334	1	8097	8097		56.434	8.7765	1	295960			25088	1332	16617	16679	25429	25429					-0.04649796464218525
LPNEGRNDY	9	Unmodified	_LPNEGRNDY_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2518310546875	2	539.25162	1076.48869	2.0654	0.0011138	-1.1012	-0.00059381	0.96427	0.00051998	539.250984342856	24.071	0.11851	24.071	24.012	24.13	0					6	2	3	0	0	0	0.35021	1	8267	8267		45.972	10.772	1	442030			25089	1332	16617	16679	25430	25430					-0.04649796464218525
LPNNAKLEM	9	Unmodified	_LPNNAKLEM_					0	0	0		ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2734375	2	515.273509	1028.53247	1.1954	0.00061594	-2.2314	-0.0011498	-1.0361	-0.00053386	515.2722628802244	32.187	0.21593	32.187	32.099	32.315	0					12	5	3	0	0	0	0.037924	1	11805	11805		101.25	37.045	1	286310			25090	6177	16618	16680	25431	25431					0.019340967085327065
LPNNAKLEM	9	Unmodified	_LPNNAKLEM_					0	0	0		ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2738647460938	2	515.273509	1028.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.953	1	31.953	31.453	32.453	0								0	0	0	0.30009	1	11060	11060		35.152	13.192	1				25091	6177	16618	16680	25432	25432					0.019340967085327065
LPNNAKLEM	9	Unmodified	_LPNNAKLEM_					0	0	0		ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2734375	2	515.273509	1028.53247	0.1516	7.8115E-05	0.25005	0.00012884	0.40165	0.00020696	515.2734440612533	32.128	0.21886	32.128	32.017	32.236	0					9	4	3	0	0	0	0.15163	1	12095	12095		67.494	47.012	1	257340			25092	6177	16618	16680	25433	25433					0.019340967085327065
LPNNAKLEM	9	Unmodified	_LPNNAKLEM_					0	0	0		ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	ENSG00000169696|ENST00000306739|ASPSCR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.27392578125	2	515.273509	1028.53247	1.4998	0.00077282	-1.3202	-0.00068025	0.17965	9.257E-05	515.2730759175282	32.12	0.21968	32.12	32	32.219	0					10	4	3	0	0	0	0.056004	1	12088	12088		93.143	43.119	1	488570			25093	6177	16618	16680	25434	25434					0.019340967085327065
LPNSPGSTF	9	Unmodified	_LPNSPGSTF_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1;COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant;COL17A1|p.P1229Rfs*22|1|0.39|ENSG00000065618|chr10:104034701-104034701|G/-|frameshift_variant;ENST00000483876.1_1_10:105833772-105837213:-|nuORF;COL17A1|p.E391Kfs*12|1|0.43|ENSG00000065618|chr10:104059690-104059690|T/-|frameshift_variant	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.22906494140625	2	460.229625	918.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.255	1	36.255	35.755	36.755	0								0	0	0	0.3245	1	12283	12283		30.318	3.5216	1				25094	1377	16619	16681	25435	25435					-0.017787808905495694
LPPENPSR	8	Unmodified	_LPPENPSR_					0	0	0		ENST00000261716.7_1_17:27818831-27822603:+|nuORF	ENST00000261716.7_1_17:27818831-27822603:+|nuORF	ENST00000261716.7_1_17:27818831-27822603:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.24249267578125	2	455.243067	908.47158	-1.1125	-0.00050645	0.11046	5.0286E-05	-1.002	-0.00045616	455.24322169482775	17.03	0.16567	17.03	16.911	17.077	0					10	6	2	0	0	0	0.58597	1	4189	4189		51.335	5.3835	1	63895			25095	8300	16620	16682	25436	25436					0.013683277206155253
LPPGAIAGAG	10	Unmodified	_LPPGAIAGAG_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1;FOXK1|p.Y219Pfs*84|1|0.31|ENSG00000164916|chr7:4740930-4740931|TG/-|frameshift_variant	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.2372131347656	2	412.237253	822.459953	1.0173	0.00041937	-0.9902	-0.0004082	0.02711	1.1176E-05	412.23682878061607	16.711	0.17195	16.711	16.62	16.792	0					7	4	2	0	0	0	0.59237	1	4590	4590		35.201	0	1	601840			25096	5740	16621	16683	25437	25437					0.04162130697284283
LPPGDSNQL	9	Unmodified	_LPPGDSNQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7405090332031	2	470.740357	939.46616	-0.60669	-0.00028559	1.1072	0.00052123	0.50056	0.00023563	470.7409588620669	27.662	0.18039	27.662	27.576	27.756	0					7	4	2	0	0	0	0.25716	1	9092	9092		54.776	1.4249	1	81115			25097	6049	16622	16684	25438	25438					-0.005993958618546458
LPPGSVISY	9	Unmodified	_LPPGSVISY_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7579650878906	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.217	1	42.217	41.717	42.717	0								0	0	0	0.09203	1	16836	16836		73.975	18.471	1				25098	6886	16623	16685	25439	25439					0.03299266665953837
LPPGSVISY	9	Unmodified	_LPPGSVISY_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7582092285156	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.776	1	42.776	42.276	43.276	0								0	0	0	0.16876	1	17092	17092		55.504	0	1				25099	6886	16623	16685	25440	25440					0.03299266665953837
LPPGSVISY	9	Unmodified	_LPPGSVISY_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7576904296875	2	466.758018	931.501483	0.63887	0.0002982	-1.3707	-0.00063978	-0.73183	-0.00034159	466.75732089261805	42.579	1.0426	42.579	41.918	42.96	0					39	29	2	0	0	0	0.45358	1	16935	16935		37.159	11.709	1	106200			25100	6886	16623	16685	25441	25441					0.03299266665953837
LPPGVHISY	9	Unmodified	_LPPGVHISY_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000548269.1_1_12:53587490-53588125:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7713928222656	2	491.77146	981.528367	0.8189	0.00040271	-1.4095	-0.00069314	-0.59058	-0.00029043	491.7707822277512	37.111	0.84468	37.111	36.863	37.708	0					25	17	2	0	0	0	0.14734	1	14495	14495		68.485	23.954	1	142350			25101	4338	16624	16686	25442	25442					0.03686375277140996
LPPLPPPPES	10	Unmodified	_LPPLPPPPES_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2903442382812	2	522.292225	1042.5699	1.7868	0.00093325	-4.0626	-0.0021219	-2.2758	-0.0011886	522.2896014649316	38.78	0.27775	38.78	38.65	38.928	0					20	10	3	0	0	0	0.40673	1	15225	15225		55.504	2.4152	1	221350	+		25102	14545	16625	16687	25443	25443					0.05031511245783804
LPPPATEALDT	11	Unmodified	_LPPPATEALDT_					0	0	0			REV__nc|ENSG00000151136|A6QL63-5|ABTB3	REV__nc|ENSG00000151136|A6QL63-5|ABTB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.79638671875	2	562.795329	1123.5761	1.0757	0.00060539	1.1264	0.00063392	2.2021	0.0012393	562.7958247379358	30.655	0.41713	30.655	30.529	30.946	0					13	8	2	0	0	0	0.45317	1	11376	11376		47.657	10.498	1	123470	+		25103	15465	16626	16688	25444	25444					0.019259846866589214
LPPSLCSPE	9	Carbamidomethyl (C)	_LPPSLC(Carbamidomethyl (C))SPE_	LPPSLC(1)SPE		LPPSLC(46)SPE		0	1	0		ENST00000261799.8_1_5:149535034-149535298:-|nuORF	ENST00000261799.8_1_5:149535034-149535298:-|nuORF	ENST00000261799.8_1_5:149535034-149535298:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2478942871094	2	500.244418	998.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.413	1	33.413	32.913	33.913	0								0	0	0	0.23459	1	11210	11210		45.952	7.1458	1				25104	8301	16627	16689	25445	25445	362				-0.025015849367377996
LPPSPPAAY	9	Unmodified	_LPPSPPAAY_					0	0	0			REV__ENST00000470432.5_1_1:150480640-150482267:+|nuORF	REV__ENST00000470432.5_1_1:150480640-150482267:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.74462890625	2	456.744911	911.475269	-0.14514	-6.6291E-05	-0.4884	-0.00022307	-0.63354	-0.00028937	456.74466355426324	32.801	0.47406	32.801	32.65	33.124	0					20	11	2	0	0	0	0.49003	1	12480	12480		33.516	3.674	1	128570	+		25105	12763	16628	16690	25446	25446					0.01598997494465948
LPQAQESNH	9	Unmodified	_LPQAQESNH_					0	0	0		IKZF4|p.D48E|1|0.17|ENSG00000123411|chr12:56023727-56023727|C/G|missense_variant	IKZF4|p.D48E|1|0.17|ENSG00000123411|chr12:56023727-56023727|C/G|missense_variant	IKZF4|p.D48E|1|0.17|ENSG00000123411|chr12:56023727-56023727|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2467651367188	2	512.246338	1022.47812	0.43978	0.00022527	0.78539	0.00040231	1.2252	0.00062759	512.2466734937176	14.51	0.14378	14.51	14.468	14.612	0					11	6	2	0	0	0	0.57706	1	3080	3080		24.203	0	1	140480			25106	11221	16629	16691	25447	25447					-0.032217791186667455
LPQFRELGY	9	Unmodified	_LPQFRELGY_					0	0	0		ENSG00000154764|ENST00000285018|WNT7A	ENSG00000154764|ENST00000285018|WNT7A	ENSG00000154764|ENST00000285018|WNT7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.8013305664062	2	561.800749	1121.58694	1.1754	0.00066033	-0.50172	-0.00028187	0.67367	0.00037847	561.8006316798547	31.034	0.31199	31.034	30.929	31.241	0					13	6	3	0	0	0	0.16002	1	11548	11548		66.429	16.988	1	485360			25107	5101	16630	16692	25448	25448					0.031014318516099593
LPQFVQLG	8	Unmodified	_LPQFVQLG_					0	0	0			REV__ENST00000566733.2_1_6:3911567-3911663:-|nuORF	REV__ENST00000566733.2_1_6:3911567-3911663:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.25787353515625	2	451.260728	900.506903	-2.6089	-0.0011773	-3.8915	-0.0017561	-6.5005	-0.0029334	451.2584662896874	34.485	0.1773	34.485	34.431	34.609	0					7	5	2	0	0	0	0.59411	1	12215	12215		50.025	0.58299	1	68282	+		25108	20348	16631	16693	25449	25449					0.05266990248435377
LPQGEKVQAM	10	Unmodified	_LPQGEKVQAM_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENST00000491322.1_1_1:182356257-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.7933959960938	2	550.792066	1099.56958	1.521	0.00083775	1.3033	0.00071785	2.8243	0.0015556	550.7925687348148	26.963	0.20382	26.963	26.85	27.054	0					12	6	3	0	0	0	0.5155	1	8231	8231		43.651	5.8393	1	78411			25109	4023	16632	16694	25450	25450					0.023777682543141054
LPQGEKVQAM	10	Unmodified	_LPQGEKVQAM_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENST00000491322.1_1_1:182356257-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7926635742188	2	550.792066	1099.56958	1.831	0.0010085	-0.72393	-0.00039873	1.1071	0.00060977	550.7916021877578	27.163	0.3391	27.163	27.01	27.349	0					28	8	4	0	0	0	0.24329	1	9453	9453		74.165	4.5374	1	634960			25110	4023	16632	16694	25451	25451					0.023777682543141054
LPQGEKVQAM	10	Unmodified	_LPQGEKVQAM_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENST00000491322.1_1_1:182356257-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.79248046875	2	550.792066	1099.56958	0.65624	0.00036145	0.63931	0.00035213	1.2955	0.00071358	550.7923878211387	27.111	0.42135	27.111	26.952	27.373	0					20	8	3	0	0	0	0.16745	1	9676	9676		83.647	34.205	1	611730			25111	4023	16632	16694	25452	25452					0.023777682543141054
LPQGPLGTSF	10	Unmodified	_LPQGPLGTSF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7739562988281	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.877	1	48.877	48.377	49.377	0								0	0	0	0.33107	1	19392	19392		45.972	1.8554	1				25112	8070	16633	16695	25453	25453					0.026700540689603258
LPQGVHVGCP	10	Unmodified	_LPQGVHVGCP_					0	0	0		ENST00000595091.6_2_19:53837025-53844497:+|nuORF	ENST00000595091.6_2_19:53837025-53844497:+|nuORF	ENST00000595091.6_2_19:53837025-53844497:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7615966796875	2	503.760569	1005.50659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.75	1	14.75	14.25	15.25	0								0	0	0	0.35072	1	3739	3739		16.473	0	1				25113	10994	16634	16696	25454	25454					0.004052472569242127
LPQHQVPAY	9	Unmodified	_LPQHQVPAY_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7803955078125	2	526.779816	1051.54508	0.10236	5.3921E-05	0.65213	0.00034353	0.75449	0.00039745	526.7802762061631	28.523	0.36469	28.523	28.238	28.603	0					26	9	4	0	0	0	0.30268	1	10059	10059		50.025	11.218	1	685980			25114	3646	16635	16697	25455	25455					0.021368761630810695
LPQHQVPAY	9	Unmodified	_LPQHQVPAY_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7802124023438	2	526.779816	1051.54508	1.7612	0.00092777	-0.75141	-0.00039583	1.0098	0.00053194	526.7794880450917	28.524	0.55398	28.524	28.224	28.778	0					32	11	4	0	0	0	0.11118	1	10449	10449		76.847	2.8719	1	1609900			25115	3646	16635	16697	25456	25456					0.021368761630810695
LPQHQVPAY	9	Unmodified	_LPQHQVPAY_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7799682617188	2	526.779816	1051.54508	1.6282	0.00085771	-0.95123	-0.00050109	0.67698	0.00035662	526.7792261189411	28.414	0.56431	28.414	28.143	28.707	0					30	11	4	0	0	0	0.077948	1	10297	10297		85.359	37.702	1	1103000			25116	3646	16635	16697	25457	25457					0.021368761630810695
LPQIQPNLTN	10	Unmodified	_LPQIQPNLTN_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.317138671875	2	569.316763	1136.61897	3.4455	0.0019616	-3.956	-0.0022522	-0.51045	-0.00029061	569.3151716705302	39.639	0.28127	39.639	39.543	39.825	0					8	6	2	0	0	0	0.5276	1	15670	15670		30.318	0	1	226780			25117	11701	16636	16698	25458	25458					0.056127995347424076
LPQLGSPH	8	Unmodified	_LPQLGSPH_					0	0	0			REV__TLE4|p.P158L|1|0.27|ENSG00000106829|chr9:79652675-79652675|C/T|missense_variant	REV__TLE4|p.P158L|1|0.27|ENSG00000106829|chr9:79652675-79652675|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.7346496582031	2	424.734877	847.455202	-0.33449	-0.00014207	-0.28263	-0.00012004	-0.61712	-0.00026211	424.73473269009867	26.79	0.41137	26.79	26.628	27.039	0					18	8	3	0	0	0	0.26534	1	9590	9590		94.006	10.719	1	664950	+		25118	21642	16637	16699	25459	25459					0.02537246554527428
LPQLGSPH	8	Unmodified	_LPQLGSPH_					0	0	0			REV__TLE4|p.P158L|1|0.27|ENSG00000106829|chr9:79652675-79652675|C/T|missense_variant	REV__TLE4|p.P158L|1|0.27|ENSG00000106829|chr9:79652675-79652675|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.7350158691406	2	424.734877	847.455202	-0.37128	-0.00015769	0.4287	0.00018208	0.057422	2.4389E-05	424.7350709690793	26.713	0.46597	26.713	26.553	27.019	0					19	9	3	0	0	0	0.30437	1	9457	9457		82.305	5.4584	1	378570	+		25119	21642	16637	16699	25460	25460					0.02537246554527428
LPQLPGEK	8	Unmodified	_LPQLPGEK_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.2578125	2	441.258185	880.501818	-0.34052	-0.00015026	-0.1844	-8.1368E-05	-0.52492	-0.00023162	441.2580451947684	40.394	0.2936	40.394	40.301	40.595	0					30	11	3	0	0	0	0.59773	1	15382	15382		49.442	0	1	541580	+		25120	14818	16638	16700	25461	25461					0.05678686385806486
LPQLPGEK	8	Unmodified	_LPQLPGEK_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.2577819824219	2	441.258185	880.501818	-1.0795	-0.00047633	1.2173	0.00053715	0.13782	6.0815E-05	441.2586906521572	40.163	0.20845	40.163	40.092	40.3	0					16	11	2	0	0	0	0.5676	1	13451	13451		53.351	0	1	94815	+		25121	14818	16638	16700	25462	25462					0.05678686385806486
LPQLPGEK	8	Unmodified	_LPQLPGEK_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.2579040527344	2	441.258185	880.501818	0.52381	0.00023114	-0.90731	-0.00040036	-0.3835	-0.00016922	441.2577952250923	40.393	0.37513	40.393	40.248	40.623	0					30	15	3	0	0	0	0.37378	1	15890	15890		73.975	0	1	552490	+		25122	14818	16638	16700	25463	25463					0.05678686385806486
LPQPVSHA	8	Unmodified	_LPQPVSHA_					0	0	0			REV__USH2A|p.A4144V|1|0.5|ENSG00000042781|chr1:215675480-215675480|G/A|missense_variant	REV__USH2A|p.A4144V|1|0.5|ENSG00000042781|chr1:215675480-215675480|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.73486328125	2	424.734877	847.455202	0.14843	6.3043E-05	-0.3524	-0.00014968	-0.20397	-8.6635E-05	424.734617938104	26.616	0.28554	26.616	26.478	26.764	0					10	6	2	0	0	0	0.64096	1	8587	8587		42.474	3.6683	1	52860	+		25123	22266	16639	16701	25464	25464					0.025372465545160594
LPQVQNTAM	9	Unmodified	_LPQVQNTAM_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.25787353515625	2	501.257859	1000.50117	0.029597	1.4836E-05	1.0644	0.00053354	1.094	0.00054837	501.2583077084008	35.25	0.40366	35.25	35.004	35.408	0					17	11	2	0	0	0	0.28897	1	13615	13615		51.193	13.381	1	102430			25124	6462	16640	16702	25465	25465					0.000935236744339818
LPQVQNTAM	9	Unmodified	_LPQVQNTAM_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2572021484375	2	501.257859	1000.50117	-0.40894	-0.00020499	0.90273	0.0004525	0.49379	0.00024752	501.25854542842427	35.061	0.21738	35.061	34.963	35.18	0					9	6	2	0	0	0	0.39215	1	12485	12485		42.396	5.237	1	41047			25125	6462	16640	16702	25466	25466					0.000935236744339818
LPQWPCPLN	9	Unmodified	_LPQWPCPLN_					0	0	0			REV__ENST00000420967.5_1_12:118454632-118456902:+|nuORF	REV__ENST00000420967.5_1_12:118454632-118456902:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2718505859375	2	534.27077	1066.52699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.4	1	23.4	22.9	23.9	0								0	0	0	0.34907	1	7025	7025		25.45	0	1		+		25126	19077	16641	16703	25467	25467					-0.0036158208329197805
LPQYGGAGRRQ	11	Unmodified	_LPQYGGAGRRQ_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.5506591796875	3	401.551144	1201.6316	0.60326	0.00024224	-2.0025	-0.00080411	-1.3993	-0.00056187	401.5503146694327	14.589	0.10726	14.589	14.529	14.636	0					7	4	2	0	0	0	0.6208	1	3025	3025		35.178	1.0917	1	391720	+		25127	17314	16642	16704	25468	25468					0.03885255717682412
LPRDAAGAE	9	Unmodified	_LPRDAAGAE_					0	0	0		ENST00000371276.8_2_1:55252675-55252738:-|nuORF	ENST00000371276.8_2_1:55252675-55252738:-|nuORF	ENST00000371276.8_2_1:55252675-55252738:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2339782714844	2	450.232699	898.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.253	1	31.253	30.753	31.753	0								0	0	0	0.36609	1	10033	10033		20.947	1.587	1				25128	8968	16643	16705	25469	25469					-0.0024426265905503897
LPRLLADQ	8	Unmodified	_LPRLLADQ_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2772521972656	2	463.276909	924.539266	4.1445	0.00192	-3.9345	-0.0018227	0.21	9.7288E-05	463.2755246291262	20.849	0.088053	20.849	20.793	20.881	0					5	3	2	0	0	0	0.53424	1	5896	5896		56.721	3.7844	1	50799	+		25129	12872	16644	16706	25470	25470					0.07397777651408433
LPRNEADEL	9	Unmodified	_LPRNEADEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7704467773438	2	528.769645	1055.52474	0.50547	0.00026728	0.016206	8.5692E-06	0.52168	0.00027585	528.7698464467018	28.506	0.24729	28.506	28.395	28.643	0					20	10	3	0	0	0	0.15163	1	8900	8900		67.494	12.717	1	332970			25130	2006	16645	16707	25471	25471					-0.0008033928738768736
LPRNEADEL	9	Unmodified	_LPRNEADEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.77099609375	2	528.769645	1055.52474	0.14239	7.529E-05	1.9592	0.001036	2.1016	0.0011112	528.7706256673354	28.523	0.22295	28.523	28.43	28.653	0					16	8	3	0	0	0	0.14578	1	9200	9200		68.846	13.342	1	280240			25131	2006	16645	16707	25472	25472					-0.0008033928738768736
LPRNEADEL	9	Unmodified	_LPRNEADEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7699584960938	2	528.769645	1055.52474	-1.1727	-0.00062009	1.8058	0.00095483	0.63306	0.00033474	528.7707093346829	28.557	0.24316	28.557	28.467	28.71	0					11	6	2	0	0	0	0.0406	1	9497	9497		98.629	21.312	1	440690			25132	2006	16645	16707	25473	25473					-0.0008033928738768736
LPRSLPACPRS	11	Unmodified	_LPRSLPACPRS_					0	0	0			REV__ENST00000537112.5_1_16:16421763-16427707:+|nuORF	REV__ENST00000537112.5_1_16:16421763-16427707:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	598.83203125	2	598.832057	1195.64956	0.13852	8.2952E-05	-0.21953	-0.00013146	-0.081006	-4.8509E-05	598.8320031978916	24.035	0.35636	24.035	23.919	24.275	0					25	11	3	0	0	0	0.57554	1	7004	7004		22.58	0	1	178750	+		25133	20111	16646	16708	25474	25474					0.05956254648117465
LPRVTSEY	8	Unmodified	_LPRVTSEY_					0	0	0		ENST00000489585.5_1_1:236046543-236046774:-|nuORF	ENST00000489585.5_1_1:236046543-236046774:-|nuORF	ENST00000489585.5_1_1:236046543-236046774:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7586669921875	2	482.758549	963.502546	-1.2976	-0.00062644	1.0508	0.00050729	-0.24682	-0.00011915	482.75918063840595	33.704	0.24026	33.704	33.629	33.869	0					17	9	3	0	0	0	0.44433	1	11339	11339		65.803	1.5959	1	283860			25134	10058	16647	16709	25475	25475					0.01933481034848228
LPSAATLRY	9	Unmodified	_LPSAATLRY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.28173828125	2	496.282192	990.549831	0.72432	0.00035947	-1.437	-0.00071315	-0.71268	-0.00035369	496.2815942404739	35.867	0.42156	35.867	35.531	35.953	0					22	11	3	0	0	0	0.15163	1	13442	13442		67.494	14.142	1	217690			25135	6005	16648	16710	25476	25476					0.054177603058633395
LPSAATLRY	9	Unmodified	_LPSAATLRY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2820739746094	2	496.282192	990.549831	0.75085	0.00037263	-4.2194	-0.002094	-3.4685	-0.0017214	496.28148943567174	35.756	0.64416	35.756	35.318	35.963	0					41	18	4	0	0	0	0.15163	1	13919	13919		67.494	16.158	1	354840			25136	6005	16648	16710	25477	25477					0.054177603058633395
LPSAATLRY	9	Unmodified	_LPSAATLRY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.28240966796875	2	496.282192	990.549831	-0.68662	-0.00034076	-0.48444	-0.00024042	-1.1711	-0.00058118	496.28239210952825	35.745	0.41435	35.745	35.484	35.898	0					24	8	4	0	0	0	0.27249	1	13768	13768		52.937	5.2794	1	237120			25137	6005	16648	16710	25478	25478					0.054177603058633395
LPSAATLRY	9	Unmodified	_LPSAATLRY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2819519042969	2	496.282192	990.549831	0.96968	0.00048123	-3.3856	-0.0016802	-2.4159	-0.001199	496.2814091823509	35.691	0.66919	35.691	35.262	35.931	0					40	13	4	0	0	0	0.078509	1	13809	13809		85.161	24.189	1	564470			25138	6005	16648	16710	25479	25479					0.054177603058633395
LPSADSVQY	9	Unmodified	_LPSADSVQY_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant;NUP205|p.R582H|2|0.23|ENSG00000155561|chr7:135593107-135593107|G/A|missense_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.239990234375	2	490.24019	978.465826	0.77295	0.00037893	-0.80772	-0.00039598	-0.034764	-1.7043E-05	490.23965750951345	34.872	0.21671	34.872	34.815	35.032	0					10	4	3	0	0	0	0.39215	1	13449	13449		42.396	1.618	1	771540			25139	5131	16649	16711	25480	25480					-0.024268155817139814
LPSDKALVL	9	Unmodified	_LPSDKALVL_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2945251464844	2	478.294768	954.574983	0.42536	0.00020345	-0.92464	-0.00044225	-0.49928	-0.0002388	478.2943582662323	39.636	0.1748	39.636	39.535	39.71	0					13	7	2	0	0	0	0.41113	1	15114	15114		40.778	1.972	1	201820			25140	854	16650	16712	25481	25481					0.09587815108409359
LPSDKALVL	9	Unmodified	_LPSDKALVL_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.294921875	2	478.294768	954.574983	-0.11656	-5.5748E-05	0.26574	0.0001271	0.14918	7.1353E-05	478.29480656627413	39.595	0.22739	39.595	39.492	39.72	0					16	8	2	0	0	0	0.30841	1	15556	15556		49.536	0.094497	1	75114			25141	854	16650	16712	25482	25482					0.09587815108409359
LPSEIEVKY	9	Unmodified	_LPSEIEVKY_					0	0	0		ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2953491210938	2	539.294965	1076.57538	1.9881	0.0010722	-0.78698	-0.00042441	1.2012	0.00064778	539.294378091262	38.268	0.21312	38.268	38.156	38.369	0					20	8	3	0	0	0	0.098791	1	14530	14530		79.713	18.741	1	221100			25142	143	16651	16713	25483	25483					0.04015190037625871
LPSEIEVKY	9	Unmodified	_LPSEIEVKY_					0	0	0		ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.29541015625	2	539.294965	1076.57538	1.9452	0.001049	-0.37384	-0.00020161	1.5713	0.00084741	539.2951062201911	38.226	0.31471	38.226	38.108	38.423	0					21	11	3	0	0	0	0.023928	1	14970	14970		115.49	35.781	1	536520			25143	143	16651	16713	25484	25484					0.04015190037625871
LPSEIEVKY	9	Unmodified	_LPSEIEVKY_					0	0	0		ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.295166015625	2	539.294965	1076.57538	0.68439	0.00036909	0.31581	0.00017031	1.0002	0.0005394	539.2950711377866	38.16	0.29503	38.16	37.988	38.283	0					17	6	4	0	0	0	0.098791	1	14954	14954		79.713	10.926	1	799390			25144	143	16651	16713	25485	25485					0.04015190037625871
LPSEIEVKY	9	Unmodified	_LPSEIEVKY_					0	0	0		ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2954711914062	2	539.294965	1076.57538	2.0686	0.0011156	-1.1325	-0.00061074	0.9361	0.00050483	539.2942322008823	38.162	0.24568	38.162	38.072	38.317	0					16	5	4	0	0	0	0.023928	1	14972	14972		115.49	24.717	1	2123300			25145	143	16651	16713	25486	25486					0.04015190037625871
LPSEIEVKY	9	Unmodified	_LPSEIEVKY_					0	0	0		ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2952880859375	2	539.294965	1076.57538	3.4195	0.0018441	-2.5331	-0.0013661	0.88637	0.00047801	539.2936429770535	38.151	0.19523	38.151	38.055	38.251	0					8	4	2	0	0	0	0.028876	1	14984	14984		110.12	41.333	1	1008100			25146	143	16651	16713	25487	25487					0.04015190037625871
LPSELERSY	9	Unmodified	_LPSELERSY_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2805786132812	2	547.279846	1092.54514	1.8541	0.0010147	-1.405	-0.00076892	0.44916	0.00024581	547.2793940584177	33.584	0.29589	33.584	33.456	33.752	0					16	7	3	0	0	0	0.37744	1	12428	12428		43.651	4.398	1	220650			25147	1278	16652	16714	25488	25488					0.002568313724395921
LPSELERSY	9	Unmodified	_LPSELERSY_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2797241210938	2	547.279846	1092.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.539	1	33.539	33.039	34.039	0								0	0	0	0.018495	1	12759	12759		101.46	44.739	1				25148	1278	16652	16714	25489	25489					0.002568313724395921
LPSELERSY	9	Unmodified	_LPSELERSY_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2802124023438	2	547.279846	1092.54514	1.8963	0.0010378	-1.2069	-0.00066049	0.68948	0.00037734	547.2791662324171	33.541	0.31827	33.541	33.332	33.65	0					11	6	2	0	0	0	0.10506	1	12774	12774		78.264	26.928	1	618810			25149	1278	16652	16714	25490	25490					0.002568313724395921
LPSENHKEM	9	Unmodified	_LPSENHKEM_					0	0	0		ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.7592163085938	2	542.758223	1083.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.854	1	18.854	18.354	19.354	0								0	0	0	0.19616	1	4766	4766		29.17	3.596	1				25150	1129	16653	16715	25491	25491					-0.03651681676501539
LPSENHKEM	9	Unmodified	_LPSENHKEM_					0	0	0		ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.758544921875	2	542.758223	1083.50189	0.27319	0.00014828	0.033819	1.8356E-05	0.30701	0.00016663	542.7581847495254	18.831	0.14798	18.831	18.762	18.91	0					9	4	3	0	0	0	0.090954	1	4983	4983		56.434	8.5182	1	112430			25151	1129	16653	16715	25492	25492					-0.03651681676501539
LPSENHKEM	9	Unmodified	_LPSENHKEM_					0	0	0		ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7587280273438	2	542.758223	1083.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.961	1	18.961	18.461	19.461	0								0	0	0	0.2882	1	5054	5054		23.523	0	1				25152	1129	16653	16715	25493	25493					-0.03651681676501539
LPSENHKEM	9	Unmodified	_LPSENHKEM_					0	0	0		ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7586059570312	2	542.758223	1083.50189	2.0185	0.0010956	-0.4611	-0.00025026	1.5574	0.0008453	542.7576780759875	19.039	0.36599	19.039	18.83	19.196	0					21	7	4	0	0	0	0.0028263	1	5826	5826		141.52	59.215	1	1085100			25153	1129	16653	16715	25494	25494					-0.03651681676501539
LPSETIQTY	9	Unmodified	_LPSETIQTY_					0	0	0		ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2696533203125	2	526.268947	1050.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.06	1	38.06	37.56	38.56	0								0	0	0	0.34845	1	12429	12429		25.574	0.12388	1				25154	6345	16654	16716	25495	25495					0.00010026623863268469
LPSETIQTY	9	Unmodified	_LPSETIQTY_					0	0	0		ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2686157226562	2	526.268947	1050.52334	1.9963	0.0010506	-1.0461	-0.00055055	0.95018	0.00050005	526.268244672096	38.373	0.27818	38.373	38.287	38.565	0					17	9	3	0	0	0	0.35021	1	14557	14557		45.972	1.8554	1	335960			25155	6345	16654	16716	25496	25496					0.00010026623863268469
LPSETIQTY	9	Unmodified	_LPSETIQTY_					0	0	0		ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.269287109375	2	526.268947	1050.52334	1.6277	0.0008566	0.50469	0.0002656	2.1324	0.0011222	526.2684739438298	38.258	0.53856	38.258	38.156	38.695	0					23	11	3	0	0	0	0.25716	1	15037	15037		54.776	8.8041	1	653090			25156	6345	16654	16716	25497	25497					0.00010026623863268469
LPSGLHSLQ	9	Unmodified	_LPSGLHSLQ_					0	0	0		ENST00000416600.6_1_20:3847373-3847754:+|nuORF	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.26666259765625	2	476.266542	950.51853	-0.11881	-5.6587E-05	0.41336	0.00019687	0.29454	0.00014028	476.2668150277867	34.363	0.16525	34.363	34.274	34.439	0					7	4	2	0	0	0	0.39215	1	13242	13242		42.396	3.1433	1	120140			25157	9363	16655	16717	25498	25498					0.04129187271757928
LPSHTKIKY	9	Unmodified	_LPSHTKIKY_					0	0	0		CWC15|p.P93Afs*12|1|0.42|ENSG00000150316|chr11:94971034-94971035|-/T|frameshift_variant;ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15	CWC15|p.P93Afs*12|1|0.42|ENSG00000150316|chr11:94971034-94971035|-/T|frameshift_variant	CWC15|p.P93Afs*12|1|0.42|ENSG00000150316|chr11:94971034-94971035|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.88153076171875	3	362.88172	1085.62333	0.73625	0.00026717	-1.0281	-0.00037308	-0.29186	-0.00010591	362.88127154141415	21.278	0.18695	21.278	21.217	21.404	0					12	4	4	0	0	0	0.54267	1	6749	6749		42.864	11.334	1	750340			25158	722	16656	16718	25499	25499					0.08394308748324875
LPSHTKIKY	9	Unmodified	_LPSHTKIKY_					0	0	0		CWC15|p.P93Afs*12|1|0.42|ENSG00000150316|chr11:94971034-94971035|-/T|frameshift_variant;ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15	CWC15|p.P93Afs*12|1|0.42|ENSG00000150316|chr11:94971034-94971035|-/T|frameshift_variant	CWC15|p.P93Afs*12|1|0.42|ENSG00000150316|chr11:94971034-94971035|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.881591796875	3	362.88172	1085.62333	1.1326	0.00041101	-1.3748	-0.00049888	-0.24214	-8.7869E-05	362.88127018494976	21.182	0.46102	21.182	21.126	21.587	0					15	9	2	0	0	0	0.33044	1	6869	6869		63.534	24.281	1	1929100			25159	722	16656	16718	25500	25500					0.08394308748324875
LPSKEAITV	9	Unmodified	_LPSKEAITV_					0	0	0		ENSG00000198001|ENST00000613694|IRAK4	ENSG00000198001|ENST00000613694|IRAK4	ENSG00000198001|ENST00000613694|IRAK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2841796875	2	479.2844	956.554247	0.46306	0.00022194	-1.3323	-0.00063856	-0.86926	-0.00041662	479.2838822117002	36.169	0.34903	36.169	35.98	36.329	0					22	9	3	0	0	0	0.19605	1	13581	13581		62.107	0	1	418720			25160	7518	16657	16719	25501	25501					0.07423224728745481
LPSKEVIK	8	Unmodified	_LPSKEVIK_					0	0	0		ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2;ATP2C2|p.Y727Tfs*11|2|0.26|ENSG00000064270|chr16:84459146-84459146|T/-|frameshift_variant;ATP2C2|p.E482Rfs*13|1|0.43|ENSG00000064270|chr16:84446364-84446364|A/-|frameshift_variant	ENSG00000064270|ENST00000262429|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.28961181640625	2	457.289485	912.564418	-0.1491	-6.818E-05	0.14264	6.5229E-05	-0.0064526	-2.9507E-06	457.2895061251155	32.808	0.17056	32.808	32.73	32.9	0					8	4	2	0	0	0	0.61938	1	12511	12511		45.952	1.8352	1	146040			25161	1345	16658	16720	25502	25502					0.10463832453990562
LPSLAFPNLG	10	Unmodified	_LPSLAFPNLG_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.789306640625	2	514.792392	1027.57023	-1.586	-0.00081648	-2.5396	-0.0013074	-4.1257	-0.0021239	514.790861543774	33.016	0.11266	33.016	32.954	33.066	0					5	3	2	0	0	0	0.58308	1	11560	11560		31.53	3.6476	1	27933	+		25162	14367	16659	16721	25503	25503					0.05754930965645144
LPSNDSSKF	9	Unmodified	_LPSNDSSKF_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF;UBTF|p.S64Wfs*13|1|0.48|ENSG00000108312|chr17:44216573-44216574|AA/-|frameshift_variant	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7459411621094	2	497.745639	993.476725	-0.71788	-0.00035732	0.49974	0.00024874	-0.21814	-0.00010858	497.7459431408368	25.5	0.65108	25.5	25.264	25.915	0					26	11	3	0	0	0	0.11898	1	9010	9010		75.043	27.386	1	371260			25163	2523	16660	16722	25504	25504					-0.020274132074177942
LPSNGGHSY	9	Unmodified	_LPSNGGHSY_					0	0	0		ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.216796875	2	466.217049	930.419545	0.44113	0.00020566	-1.1006	-0.00051314	-0.65951	-0.00030748	466.21660233387735	21.098	0.27036	21.098	21.01	21.281	0					15	6	3	0	0	0	0.0792	1	6665	6665		84.916	32.616	1	453370			25164	2225	16661	16723	25505	25505					-0.04844835693143068
LPSNGGHSY	9	Unmodified	_LPSNGGHSY_					0	0	0		ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.21673583984375	2	466.217049	930.419545	-0.13536	-6.3109E-05	-0.40241	-0.00018761	-0.53777	-0.00025072	466.21689582829055	21.001	0.2621	21.001	20.93	21.192	0					9	5	2	0	0	0	0.0792	1	6903	6903		84.916	29.411	1	232290			25165	2225	16661	16723	25506	25506					-0.04844835693143068
LPSNGGHSY	9	Unmodified	_LPSNGGHSY_					0	0	0		ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.21685791015625	2	466.217049	930.419545	-0.17934	-8.3609E-05	-0.043854	-2.0445E-05	-0.22319	-0.00010405	466.21700431642364	20.901	0.12401	20.901	20.842	20.966	0					5	3	2	0	0	0	0.56424	1	5974	5974		25.574	2.5316	1	45689			25166	2225	16661	16723	25507	25507					-0.04844835693143068
LPSPVTAQKY	10	Unmodified	_LPSPVTAQKY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.8114624023438	2	552.308406	1102.60226	1.465	0.00080915	-0.89854	-0.00049627	0.56649	0.00031288	552.3078615494937	30.69	0.38466	30.69	30.4	30.784	0					27	15	2	0	0	0	0.59255	1	9741	9741		35.178	1.6626	1	122870			25167	6014	16662	16724	25508	25508					0.055062986488110255
LPSPVTAQKY	10	Unmodified	_LPSPVTAQKY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3086547851562	2	552.308406	1102.60226	1.8246	0.0010078	-1.1495	-0.0006349	0.67509	0.00037286	552.3077882201106	30.931	0.61421	30.931	30.526	31.14	0					40	14	4	0	0	0	0.073361	1	11172	11172		101.46	30.644	1	999570			25168	6014	16662	16724	25509	25509					0.055062986488110255
LPSPVTAQKY	10	Unmodified	_LPSPVTAQKY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.8104858398438	2	552.308406	1102.60226	0.24196	0.00013364	-0.058187	-3.2137E-05	0.18377	0.0001015	552.3084136856768	30.742	0.51795	30.742	30.383	30.901	0					38	18	3	0	0	0	0.57211	1	10074	10074		37.508	1.0614	1	366110			25169	6014	16662	16724	25510	25510					0.055062986488110255
LPSPVTAQKY	10	Unmodified	_LPSPVTAQKY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3086547851562	2	552.308406	1102.60226	1.6018	0.00088471	-2.988	-0.0016503	-1.3861	-0.00076557	552.3074954677129	30.913	0.82819	30.913	30.4	31.228	0					43	18	3	0	0	0	0.022799	1	11550	11550		123.21	32.838	1	1960600			25170	6014	16662	16724	25511	25511					0.055062986488110255
LPSPVTAQKY	10	Unmodified	_LPSPVTAQKY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.3080444335938	2	552.308406	1102.60226	-1.2812	-0.00070762	1.5677	0.00086584	0.28648	0.00015823	552.3092548684749	30.735	0.29904	30.735	30.533	30.832	0					13	8	2	0	0	0	0.35046	1	10486	10486		61.691	12.155	1	152450			25171	6014	16662	16724	25512	25512					0.055062986488110255
LPSQDLLGTSS	11	Unmodified	_LPSQDLLGTSS_					0	0	0		RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant;ENSG00000183638|ENST00000382483|RP1L1	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.2911987304688	2	559.290411	1116.56627	-0.79955	-0.00044718	2.801	0.0015666	2.0015	0.0011194	559.2921995696476	36.898	0.096764	36.898	36.825	36.921	0					5	4	2	0	0	0	0.44903	1	13210	13210		47.96	0.043923	1	27191			25172	6973	16663	16725	25513	25513					0.012647966813119638
LPSRPGWMC	9	Carbamidomethyl (C)	_LPSRPGWMC(Carbamidomethyl (C))_	LPSRPGWMC(1)		LPSRPGWMC(66)		0	1	0		ENST00000236137.9_1_1:169454847-169455060:-|nuORF	ENST00000236137.9_1_1:169454847-169455060:-|nuORF	ENST00000236137.9_1_1:169454847-169455060:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.259765625	2	552.259879	1102.50521	0.24631	0.00013603	-0.43682	-0.00024124	-0.19051	-0.00010521	552.2593991037539	30.563	0.24578	30.563	30.474	30.719	0					13	9	2	0	0	0	0.16524	1	10047	10047		65.803	17.844	1	118430			25173	8209	16664	16726	25514	25514	360				-0.04194710103502075
LPSSLKLSN	9	Unmodified	_LPSSLKLSN_					0	0	0		nc|ENSG00000144504|Q9P2S6-4|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1;ENSG00000144504|ENST00000401804|ANKMY1	nc|ENSG00000144504|Q9P2S6-4|ANKMY1	nc|ENSG00000144504|Q9P2S6-4|ANKMY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7827453613281	2	479.782025	957.549496	-1.4011	-0.00067221	0.54928	0.00026353	-0.8518	-0.00040868	479.7824244444666	35.641	0.59577	35.641	35.435	36.031	0					72	29	5	0	0	0	0.51991	1	12133	12133		30.318	30.318	1	1287900			25174	4621	16665	16727	25515	25515					0.0690234058599799
LPSSTRITY	9	Unmodified	_LPSSTRITY_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.287109375	2	519.284931	1036.55531	1.3779	0.0007155	1.7131	0.00088956	3.0909	0.0016051	519.2860147623456	41.168	0.085602	41.168	41.145	41.231	0					7	4	2	0	0	0	0.085655	1	15658	15658		87.754	10.98	1	98534			25175	1621	16666	16728	25516	25516					0.03849439097643881
LPSSTRITY	9	Unmodified	_LPSSTRITY_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2877807617188	2	519.284931	1036.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.165	1	41.165	40.665	41.665	0								0	0	0	0.0537	1	16188	16188		68.787	0	1				25176	1621	16666	16728	25517	25517					0.03849439097643881
LPSVEALCY	9	Unmodified	_LPSVEALCY_					0	0	0			REV__ENSG00000173011|ENST00000310074|TADA2B	REV__ENSG00000173011|ENST00000310074|TADA2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7508239746094	2	497.749336	993.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.263	1	22.263	21.763	22.763	0								0	0	0	0.35507	1	6602	6602		24.203	3.2558	1		+		25177	16485	16667	16729	25518	25518					-0.012883969313747912
LPSVLIGNG	9	Unmodified	_LPSVLIGNG_					0	0	0		ENST00000357700.10_1_10:5681946-5682531:-|nuORF	ENST00000357700.10_1_10:5681946-5682531:-|nuORF	ENST00000357700.10_1_10:5681946-5682531:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2582702636719	2	435.258185	868.501818	0.086865	3.7809E-05	-0.26416	-0.00011498	-0.1773	-7.717E-05	435.25783986119023	25.517	0.10735	25.517	25.466	25.573	0					4	2	2	0	0	0	0.47038	1	8743	8743		35.618	3.6634	1	30050			25178	8825	16668	16730	25519	25519					0.06230686385811168
LPTALTMKTA	10	Unmodified	_LPTALTMKTA_					0	0	0		ENST00000499217.6_1_15:74753894-74753933:+|nuORF	ENST00000499217.6_1_15:74753894-74753933:+|nuORF	ENST00000499217.6_1_15:74753894-74753933:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7998046875	2	523.79936	1045.58417	3.4206	0.0017917	-2.6936	-0.0014109	0.72697	0.00038079	523.7981659472783	11.571	0.079514	11.571	11.533	11.612	0					4	2	2	0	0	0	0.74461	1	2279	2279		14.137	1.1779	1	195310			25179	10140	16669	16731	25520	25520					0.06319840402443333
LPTDSHASL	9	Unmodified	_LPTDSHASL_					0	0	0		TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant	TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7402648925781	2	470.740357	939.46616	0.16053	7.5569E-05	-0.70497	-0.00033186	-0.54443	-0.00025629	470.7400611866012	27.842	0.22804	27.842	27.749	27.977	0					12	5	3	0	0	0	0.087861	1	9781	9781		82.241	18.934	1	371120			25180	1348	16670	16732	25521	25521					-0.005993958618546458
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.763671875	2	523.762975	1045.5114	1.4658	0.00076772	-0.57506	-0.0003012	0.89072	0.00046653	523.7629465236495	29.701	0.27421	29.701	29.55	29.824	0					22	11	3	0	0	0	0.3269	1	9393	9393		47.96	5.5634	1	116410			25181	7559	16671	16733	25522	25522					-0.009539133909811426
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7633056640625	2	523.762975	1045.5114	1.746	0.00091448	-0.93451	-0.00048946	0.81147	0.00042502	523.7623278407144	30	0.72342	30	29.655	30.378	0					30	18	2	0	0	0	0.015496	1	10752	10752		129.42	41.725	1	714520			25182	7559	16671	16733	25523	25523					-0.009539133909811426
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7638549804688	2	523.762975	1045.5114	0.51551	0.00027001	0.42428	0.00022222	0.93979	0.00049223	523.763231464987	29.78	0.23998	29.78	29.619	29.859	0					22	9	3	0	0	0	0.55048	1	9690	9690		27.047	1.4733	1	212950			25183	7559	16671	16733	25524	25524					-0.009539133909811426
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7633056640625	2	523.762975	1045.5114	1.7881	0.00093653	-1.7522	-0.00091773	0.035897	1.8801E-05	523.7620198262077	30	0.5057	30	29.553	30.059	0					26	10	4	0	0	0	0.021015	1	11158	11158		120.31	40.593	1	1146700			25184	7559	16671	16733	25525	25525					-0.009539133909811426
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7639770507812	2	523.762975	1045.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.755	1	29.755	29.255	30.255	0								0	0	0	0.077333	1	10050	10050		78.264	18.146	1				25185	7559	16671	16733	25526	25526					-0.009539133909811426
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.763427734375	2	523.762975	1045.5114	0.49025	0.00025678	0.95957	0.00050259	1.4498	0.00075937	523.7634201566751	29.956	0.46574	29.956	29.748	30.214	0					14	9	2	0	0	0	0.18416	1	11001	11001		63.534	6.8128	1	478980			25186	7559	16671	16733	25527	25527					-0.009539133909811426
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7634887695312	2	523.762975	1045.5114	1.626	0.00085162	-1.436	-0.00075214	0.18995	9.9487E-05	523.7620832630233	29.939	0.66485	29.939	29.532	30.197	0					29	13	4	0	0	0	0.012936	1	11012	11012		134.77	38.95	1	1193500			25187	7559	16671	16733	25528	25528					-0.009539133909811426
LPTEPPYTAY	10	Unmodified	_LPTEPPYTAY_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2848510742188	2	576.284597	1150.55464	0.14923	8.6001E-05	1.495	0.00086153	1.6442	0.00094753	576.2854228469891	42.719	0.71648	42.719	42.418	43.134	0					36	20	2	0	0	0	0.079553	2	17145	16987;17145		99.375	55.258	1	187640			25188	2453	16672	16734	25529;25530	25530					-0.014614003420547306
LPTEPPYTAY	10	Unmodified	_LPTEPPYTAY_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2861328125	2	576.284597	1150.55464	1.6963	0.00097758	-0.83503	-0.00048121	0.86132	0.00049636	576.2840771963231	42.737	0.854	42.737	42.335	43.189	0					53	24	3	0	0	0	0.39566	2	17000	17000;17167		56.721	28.839	1	275950			25189	2453	16672	16734	25531;25532	25531					-0.014614003420547306
LPTKQNEEF	9	Unmodified	_LPTKQNEEF_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2801513671875	2	553.279846	1104.54514	1.6105	0.00089104	-0.97068	-0.00053706	0.63979	0.00035399	553.2793387196527	27.366	0.51037	27.366	27.254	27.764	0					31	10	4	0	0	0	0.04067	1	9920	9920		98.582	18.869	1	693120			25190	5237	16673	16735	25533	25533					-0.0029516862757645868
LPTLHSLP	8	Unmodified	_LPTLHSLP_					0	0	0		ENST00000571138.5_1_17:5014814-5017504:+|nuORF	ENST00000571138.5_1_17:5014814-5017504:+|nuORF	ENST00000571138.5_1_17:5014814-5017504:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.7618408203125	2	439.260728	876.506903	-0.28277	-0.00012421	-0.17783	-7.8113E-05	-0.4606	-0.00020232	439.2605925863434	32.018	0.29909	32.018	31.914	32.213	0					24	12	3	0	0	0	0.55361	1	10305	10305		54.765	0	1	567740			25191	10800	16674	16736	25534	25534					0.06370990248422004
LPTLTTVASP	10	Unmodified	_LPTLTTVASP_					0	0	0			REV__ENST00000395003.5_2_5:133861968-133887760:+|nuORF	REV__ENST00000395003.5_2_5:133861968-133887760:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.29083251953125	2	500.289682	998.564812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.137	1	34.137	33.637	34.637	0								0	0	0	0.24422	1	13131	13131		58.782	2.0609	1		+		25192	18137	16675	16737	25535	25535					0.06547207383187015
LPTNLFKAVS	10	Unmodified	_LPTNLFKAVS_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3;SLITRK3|p.W429Gfs*30|1|0.35|ENSG00000121871|chr3:165189546-165189546|A/-|frameshift_variant	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3182373046875	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.481	1	50.481	49.981	50.981	0								0	0	0	0.37602	1	15698	15698		37.812	4.9991	1				25193	3237	16676	16738	25536	25536					0.08222889028479585
LPTPKGGK	8	Unmodified	_LPTPKGGK_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.2475891113281	2	399.247621	796.480688	0.92841	0.00037066	-0.83431	-0.0003331	0.094099	3.7569E-05	399.2472594765187	34.298	0.16351	34.298	34.181	34.345	0					6	4	2	0	0	0	0.61938	1	12777	12777		45.952	8.9235	1	143390			25194	4429	16677	16739	25537	25537					0.07430721076957525
LPTSSVPETR	10	Unmodified	_LPTSSVPETR_					0	0	0		ENST00000488586.1_1_2:132244081-132249533:-|nuORF;ENST00000485869.1_1_2:130940017-130940434:+|nuORF;ENST00000410036.2_1_2:132241636-132250313:-|nuORF;ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B	ENST00000488586.1_1_2:132244081-132249533:-|nuORF	ENST00000488586.1_1_2:132244081-132249533:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7958984375	2	543.793121	1085.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.373	1	42.373	41.873	42.873	0								0	0	0	0.40063	1	16632	16632		30.318	1.1682	1				25195	4995	16678	16740	25538	25538					0.032325202637593975
LPVAKDVSY	9	Unmodified	_LPVAKDVSY_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;UGP2|p.N469Mfs*4|1|0.39|ENSG00000169764|chr2:63890167-63890167|A/-|frameshift_variant;UGP2|p.N469Kfs*16|1|0.3|ENSG00000169764|chr2:63890166-63890167|-/A|frameshift_variant;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.27685546875	2	496.276575	990.538597	0.72573	0.00036016	-0.46489	-0.00023071	0.26085	0.00012945	496.27622126000654	31.698	0.18099	31.698	31.613	31.794	0					10	4	3	0	0	0	0.11898	1	11576	11576		75.043	23.851	1	271760			25196	6184	16679	16741	25539	25539					0.04294938211717181
LPVAKDVSY	9	Unmodified	_LPVAKDVSY_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;UGP2|p.N469Mfs*4|1|0.39|ENSG00000169764|chr2:63890167-63890167|A/-|frameshift_variant;UGP2|p.N469Kfs*16|1|0.3|ENSG00000169764|chr2:63890166-63890167|-/A|frameshift_variant;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2764892578125	2	496.276575	990.538597	-0.034286	-1.7015E-05	-0.15744	-7.8136E-05	-0.19173	-9.5151E-05	496.2765169709357	31.676	0.35313	31.676	31.524	31.878	0					17	7	3	0	0	0	0.037569	1	11979	11979		101.6	16.685	1	382250			25197	6184	16679	16741	25540	25540					0.04294938211717181
LPVAKDVSY	9	Unmodified	_LPVAKDVSY_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;UGP2|p.N469Mfs*4|1|0.39|ENSG00000169764|chr2:63890167-63890167|A/-|frameshift_variant;UGP2|p.N469Kfs*16|1|0.3|ENSG00000169764|chr2:63890166-63890167|-/A|frameshift_variant;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2759094238281	2	496.276575	990.538597	-0.0013131	-6.5166E-07	-0.51923	-0.00025768	-0.52054	-0.00025833	496.2763361576131	31.495	0.22612	31.495	31.356	31.582	0					7	5	2	0	0	0	0.40353	1	10861	10861		41.427	2.1738	1	59176			25198	6184	16679	16741	25541	25541					0.04294938211717181
LPVAKDVSY	9	Unmodified	_LPVAKDVSY_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;UGP2|p.N469Mfs*4|1|0.39|ENSG00000169764|chr2:63890167-63890167|A/-|frameshift_variant;UGP2|p.N469Kfs*16|1|0.3|ENSG00000169764|chr2:63890166-63890167|-/A|frameshift_variant;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.276611328125	2	496.276575	990.538597	-0.68271	-0.00033881	0.94143	0.00046721	0.25872	0.0001284	496.27706789106674	31.675	0.36374	31.675	31.471	31.835	0					17	7	3	0	0	0	0.18416	1	11854	11854		63.534	19.417	1	638680			25199	6184	16679	16741	25542	25542					0.04294938211717181
LPVDKAQEL	9	Unmodified	_LPVDKAQEL_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.7878723144531	2	506.787307	1011.56006	3.7773	0.0019143	-3.2786	-0.0016615	0.49874	0.00025275	506.78559719600094	30.473	0.13002	30.473	30.393	30.523	0					7	4	2	0	0	0	0.21263	1	10026	10026		60.118	5.3419	1	68931			25200	7369	16680	16742	25543	25543					0.05474323240423473
LPVDKAQEL	9	Unmodified	_LPVDKAQEL_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.78692626953125	2	506.787307	1011.56006	-0.20448	-0.00010363	-0.0048857	-2.476E-06	-0.20937	-0.0001061	506.7872331145262	30.637	0.27069	30.637	30.578	30.848	0					10	5	3	0	0	0	0.38666	1	11401	11401		42.864	0	1	590010			25201	7369	16680	16742	25544	25544					0.05474323240423473
LPVEGGKGGEF	11	Unmodified	_LPVEGGKGGEF_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2819213867188	2	545.282389	1088.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.412	1	31.412	30.912	31.912	0								0	0	0	0.1201	1	11433	11433		72.243	10.136	1				25202	2718	16681	16743	25545	25545					0.009491352350551097
LPVFYFAR	8	Unmodified	_LPVFYFAR_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7871398925781	2	506.78437	1011.55419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.718	1	30.718	30.218	31.218	0								0	0	0	1.7419	1	11512	11512		74.517	16.287	1				25203	6342	16682	16744	25546	25546					0.048872695194063454
LPVGGPTVRKP	11	Unmodified	_LPVGGPTVRKP_					0	0	0			REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	374.5671081542969	3	374.232752	1119.67643	0.50303	0.00018825	-0.54139	-0.0002026	-0.038358	-1.4355E-05	374.56695729089324	19.865	0.071444	19.865	19.802	19.873	0					4	2	2	0	0	0	0.60833	1	5215	5215		36.318	7.1476	1	80823	+		25204	19710	16683	16745	25547	25547					0.12137686530991232
LPVGGPTVRKP	11	Unmodified	_LPVGGPTVRKP_					0	0	0			REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.23272705078125	3	374.232752	1119.67643	-0.34589	-0.00012944	0.32646	0.00012217	-0.019422	-7.2684E-06	374.23289382636403	20.103	0.31627	20.103	19.995	20.311	0					12	6	3	0	0	0	0.35352	1	6340	6340		56.632	5.1045	1	1227800	+		25205	19710	16683	16745	25548	25548					0.12137686530991232
LPVMGSDERA	10	Oxidation (M)	_LPVM(Oxidation (M))GSDERA_		LPVM(1)GSDERA		LPVM(63)GSDERA	0	0	1			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7640380859375	2	545.763506	1089.51246	1.7445	0.00095207	-0.38017	-0.00020748	1.3643	0.00074459	545.7634783664023	36.177	0.18584	36.177	36.087	36.273	0					14	9	2	0	0	0	0.33577	1	11863	11863		63.306	6.5852	1	86469	+		25206	15619	16684	16746	25549	25549		602			-0.028716990220800653
LPVRLWCL	8	Unmodified	_LPVRLWCL_					0	0	0		ENST00000246554.7_1_19:36139219-36139264:+|nuORF	ENST00000246554.7_1_19:36139219-36139264:+|nuORF	ENST00000246554.7_1_19:36139219-36139264:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.795654296875	2	500.294048	998.573543	-0.64748	-0.00032393	1.1657	0.00058319	0.51822	0.00025926	500.79573800326716	35.645	0.21751	35.645	35.535	35.752	0					10	4	3	0	0	0	0.66238	1	13792	13792		39.021	1.993	1	193860			25207	8230	16685	16747	25550	25550					0.07419902538663337
LPVSAIRSGY	10	Unmodified	_LPVSAIRSGY_					0	0	0		PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant;nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3	PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant	PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.8015747070312	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.479	1	33.479	32.979	33.979	0								0	0	0	0.27575	1	12817	12817		54.722	15.47	1				25208	4906	16686	16748	25551	25551					0.05861431851622001
LPVSALRNSA	10	Unmodified	_LPVSALRNSA_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7999267578125	2	514.298373	1026.58219	-0.36489	-0.00018766	0.65997	0.00033942	0.29508	0.00015176	514.2986000923661	54.446	0.11703	54.446	54.412	54.529	0					10	7	2	0	0	0	0.72769	1	19750	19750		17.468	0	1	58874			25209	4594	16687	16749	25552	25552					0.0699654770885445
LPVTATEASVP	11	Unmodified	_LPVTATEASVP_					0	0	0		ENSG00000170234|ENST00000307063|PWWP2A;PWWP2A|p.P271Tfs*13|1|0.04|ENSG00000170234|chr5:160093840-160093841|-/A|frameshift_variant;PWWP2A|p.A270Efs*45|1|0.04|ENSG00000170234|chr5:160093841-160093842|-/TAGTGCAACTGACT|frameshift_variant;PWWP2A|p.E335Gfs*3|1|0.22|ENSG00000170234|chr5:160093648-160093649|-/T|frameshift_variant;PWWP2A|p.K334Rfs*25|2|0.23|ENSG00000170234|chr5:160093649-160093649|T/-|frameshift_variant;nc|ENSG00000170234|Q96N64-3|PWWP2A;nc|ENSG00000170234|Q96N64-2|PWWP2A	ENSG00000170234|ENST00000307063|PWWP2A	ENSG00000170234|ENST00000307063|PWWP2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7978515625	2	542.797872	1083.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.113	1	23.113	22.613	23.613	0								0	0	0	0.37035	1	7000	7000		25.574	9.9322	1				25210	6218	16688	16750	25553	25553					0.04274288549299854
LPVVPKATY	9	Unmodified	_LPVVPKATY_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2975158691406	2	494.29731	986.580068	0.75984	0.00037558	-0.4377	-0.00021635	0.32214	0.00015923	494.2971315679316	34.537	0.44884	34.537	34.295	34.744	0					19	11	2	0	0	0	0.087861	2	12883	12883;12941		82.241	32.799	1	378760			25211	6776	16689	16751	25554;25555	25554					0.08624118971022199
LPVVPKATY	9	Unmodified	_LPVVPKATY_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2972717285156	2	494.29731	986.580068	0.90096	0.00044534	-1.1892	-0.00058781	-0.28823	-0.00014247	494.29673926929144	34.53	0.60181	34.53	34.229	34.83	0					22	12	3	0	0	0	0.087861	1	13231	13231		82.241	13.756	1	953790			25212	6776	16689	16751	25556	25556					0.08624118971022199
LPWASTHSL	9	Unmodified	_LPWASTHSL_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8;PAQR8|p.F163Sfs*45|1|0.32|ENSG00000170915|chr6:52403699-52403702|TTTC/-|frameshift_variant	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2662658691406	2	506.266542	1010.51853	-0.24651	-0.0001248	-0.21454	-0.00010862	-0.46105	-0.00023341	506.2663540817795	38.803	0.35473	38.803	38.695	39.049	0					17	7	3	0	0	0	0.16524	1	15295	15295		65.803	23.329	1	197740			25213	6267	16690	16752	25557	25557					0.01369187271757255
LPWEVQRY	8	Unmodified	_LPWEVQRY_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7889404296875	2	545.787641	1089.56073	1.8644	0.0010176	-0.84977	-0.00046379	1.0146	0.00055376	545.7872293627639	41.156	0.31076	41.156	40.985	41.296	0					24	14	2	0	0	0	0.5535	1	15626	15626		54.776	17.617	1	167980			25214	4374	16691	16753	25558	25558					0.01953162680160858
LPWEVQRY	8	Unmodified	_LPWEVQRY_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7880859375	2	545.787641	1089.56073	0.56186	0.00030666	0.7472	0.00040781	1.3091	0.00071447	545.7880781520043	41.118	0.61401	41.118	40.892	41.506	0					29	14	3	0	0	0	0.3049	1	16285	16285		82.241	45.081	1	464060			25215	4374	16691	16753	25559	25559					0.01953162680160858
LPWEVQRY	8	Unmodified	_LPWEVQRY_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7882690429688	2	545.787641	1089.56073	1.9347	0.0010559	-1.0524	-0.00057439	0.88227	0.00048153	545.7871768124189	41.105	0.78172	41.105	40.748	41.53	0					42	16	4	0	0	0	0.2678	1	16277	16277		93.195	50.799	1	1003500			25216	4374	16691	16753	25560	25560					0.01953162680160858
LPWPPPAPV	9	Unmodified	_LPWPPPAPV_					0	0	0		LRRC14|p.S445P|1|0.14|ENSG00000160959|chr8:144521329-144521329|T/C|missense_variant	LRRC14|p.S445P|1|0.14|ENSG00000160959|chr8:144521329-144521329|T/C|missense_variant	LRRC14|p.S445P|1|0.14|ENSG00000160959|chr8:144521329-144521329|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2770080566406	2	487.278921	972.543289	0.63251	0.00030821	-3.2334	-0.0015756	-2.6009	-0.0012674	487.2774128514738	28.283	0.30883	28.283	28.173	28.482	0					9	6	2	0	0	0	0.35045	1	10359	10359		29.842	0	1	723960			25217	11327	16692	16754	25561	25561					0.05591867145130891
LPWPRASP	8	Unmodified	_LPWPRASP_					0	0	0			REV__ENST00000431281.5_1_17:43214735-43220935:+|nuORF	REV__ENST00000431281.5_1_17:43214735-43220935:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2599182128906	2	462.25852	922.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.334	1	28.334	27.834	28.834	0								0	0	0	1.7419	1	8840	8840		23.042	0	1		+		25218	16850	16693	16755	25562	25562					0.03813525825512443
LPYQVNQM	8	Unmodified	_LPYQVNQM_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7469177246094	2	496.747127	991.479702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.929	1	39.929	39.429	40.429	0								0	0	0	1.7419	1	15213	15213		50.025	7.6284	1				25219	2019	16694	16756	25563	25563					-0.01637861354265624
LPYTVVIHY	9	Unmodified	_LPYTVVIHY_					0	0	0		ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant;ERAP1|p.T768Nfs*53|1|0.2|ENSG00000164307|chr5:96781837-96781838|-/GAAAT|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8092041015625	2	552.808042	1103.60153	1.8181	0.0010051	-1.0334	-0.00057127	0.7847	0.00043379	552.807803523339	44.494	0.13474	44.494	44.403	44.538	0					9	5	2	0	0	0	0.30268	1	17828	17828		50.025	4.0726	1	59318			25220	5681	16695	16757	25564	25564					0.05387503999759247
LQAAQILVP	9	Unmodified	_LQAAQILVP_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.79498291015625	2	476.794935	951.575317	-0.045581	-2.1733E-05	0.072985	3.4799E-05	0.027404	1.3066E-05	476.7949084825181	32.811	0.25024	32.811	32.703	32.954	0					10	6	2	0	0	0	0.23186	1	11426	11426		57.811	2.3071	1	65968	+		25221	16582	16696	16758	25565	25565					0.09759234828277386
LQAFKNEVGV	10	Unmodified	_LQAFKNEVGV_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.8074340820312	2	552.806031	1103.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.842	1	21.842	21.342	22.342	0								0	0	0	0.4201	1	6405	6405		12.207	2.501	1				25222	5230	16697	16759	25566	25566					0.04985414506040797
LQALHEAIL	9	Unmodified	_LQALHEAIL_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000498536.5_1_11:3109437-3111932:-|nuORF	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.86871337890625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.429	1	42.429	41.929	42.929	0								0	0	0	0.37146	1	14829	14829		14.137	0	1				25223	1106	16698	16760	25567	25567					0.07810333339955378
LQAPPNPQL	9	Unmodified	_LQAPPNPQL_					0	0	0			REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF	REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.27392578125	2	489.274367	976.53418	0.60805	0.0002975	-1.3033	-0.00063768	-0.69526	-0.00034017	489.27377838965396	36.897	0.82705	36.897	36.638	37.466	0					69	25	5	0	0	0	0.41113	1	14529	14529		40.778	1.5253	1	12743000	+		25224	14813	16699	16761	25568	25568					0.04497473788796924
LQDLSPYQY	9	Unmodified	_LQDLSPYQY_					0	0	0			REV__ENST00000553741.5_1_14:21488585-21492212:-|nuORF	REV__ENST00000553741.5_1_14:21488585-21492212:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.7760009765625	2	563.774396	1125.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.282	1	33.282	32.782	33.782	0								0	0	0	0.2591	1	11159	11159		42.396	4.5846	1		+		25225	16070	16700	16762	25569	25569					-0.02350571001852586
LQDPVQSSTPE	11	Unmodified	_LQDPVQSSTPE_					0	0	0		ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.790283203125	2	600.790775	1199.567	-1.8706	-0.0011239	1.0547	0.00063365	-0.81594	-0.00049021	600.7911435535533	35.945	0.079334	35.945	35.9	35.98	0					5	3	2	0	0	0	0.64626	1	12843	12843		32.751	1.2207	1	36923			25226	5879	16701	16763	25570	25570					-0.024804086696804006
LQEALALL	8	Unmodified	_LQEALALL_					0	0	0			REV__nc|ENSG00000137713|P30154-5|PPP2R1B	REV__nc|ENSG00000137713|P30154-5|PPP2R1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.7682800292969	2	435.768386	869.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.862	1	48.862	48.362	49.362	0								0	0	0	1.7419	1	19388	19388		50.025	0	1		+		25227	13783	16702	16764	25571	25571					0.08223857045607019
LQEIQLTY	8	Unmodified	_LQEIQLTY_					0	0	0			REV__ENST00000396959.2_1_3:12829056-12829584:-|nuORF	REV__ENST00000396959.2_1_3:12829056-12829584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2745361328125	2	504.274032	1006.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.852	1	42.852	42.352	43.352	0								0	0	0	1.7419	1	16806	16806		42.396	0	1		+		25228	18904	16703	16765	25572	25572					0.030506343490742438
LQELQRDTL	9	Unmodified	_LQELQRDTL_					0	0	0			REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.3064575195312	2	558.306395	1114.59824	-0.47452	-0.00026493	1.2446	0.00069488	0.77011	0.00042995	558.3071352216706	28.556	0.16501	28.556	28.482	28.647	0					13	6	3	0	0	0	0.3269	1	9209	9209		32.812	0	1	171150	+		25229	15563	16704	16766	25573	25573					0.04552209155099263
LQENPSTP	8	Unmodified	_LQENPSTP_					0	0	0		TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.21905517578125	2	443.219257	884.423961	0.58129	0.00025764	-0.86761	-0.00038454	-0.28632	-0.0001269	443.21882023100795	29.132	0.17205	29.132	29.046	29.218	0					10	4	3	0	0	0	0.59773	1	10366	10366		49.442	0	1	131650			25230	4914	16705	16767	25574	25574					-0.022873712702448756
LQERTAQL	8	Unmodified	_LQERTAQL_					0	0	0		nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.76922607421875	2	479.769448	957.524344	-0.30917	-0.00014833	0.062704	3.0083E-05	-0.24647	-0.00011825	479.76946888817145	29.978	0.17806	29.978	29.899	30.077	0					7	4	2	0	0	0	0.41	1	10161	10161		69.628	3.8245	1	187210			25231	11790	16706	16768	25575	25575					0.04388285783409174
LQERTAQL	8	Unmodified	_LQERTAQL_					0	0	0		nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7696228027344	2	479.769448	957.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.16	1	30.16	29.66	30.66	0								0	0	0	1.7419	1	11132	11132		90.37	2.6155	1				25232	11790	16706	16768	25576	25576					0.04388285783409174
LQESQIQYVP	10	Unmodified	_LQESQIQYVP_					0	0	0		nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant;ENSG00000198026|ENST00000322927|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2126159667969	3	402.211794	1203.61355	0.52926	0.00021288	0.40459	0.00016273	0.93385	0.00037561	402.2120401829637	18.937	1.5885	18.937	18.506	20.094	0					56	32	4	0	0	0	0.63224	1	5774	5774		30.318	1.1477	1	1393900			25233	7521	16707	16769	25577	25577					0.01989075952269559
LQETIHASV	9	Unmodified	_LQETIHASV_					0	0	0			REV__ENST00000472677.1_1_22:50635456-50635792:+|nuORF	REV__ENST00000472677.1_1_22:50635456-50635792:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2455749511719	2	499.269281	996.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.557	1	19.557	19.057	20.057	0								0	0	0	0.3245	1	5081	5081		10.866	0	1		+		25234	16372	16708	16770	25578	25578					0.025608660635725755
LQFGLVAQKL	10	Unmodified	_LQFGLVAQKL_					0	0	0			REV__ENST00000486937.5_1_21:47655184-47666418:-|nuORF	REV__ENST00000486937.5_1_21:47655184-47666418:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.89581298828125	3	372.89737	1115.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.781	1	14.781	14.281	15.281	0								0	0	0	0.3185	1	3908	3908		47.96	0	1		+		25235	15746	16709	16771	25579	25579					0.1170716829947196
LQFSSRGI	8	Unmodified	_LQFSSRGI_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.25390625	2	454.253434	906.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.393	1	21.393	20.893	21.893	0								0	0	0	1.7419	1	6792	6792		40.573	0	1				25236	1009	16710	16772	25580	25580					0.03532918100279403
LQGAANAL	8	Unmodified	_LQGAANAL_					0	0	0		nc|ENSG00000106327|Q9UP52-2|TFR2;ENST00000476304.5_1_7:100218482-100231271:-|nuORF;nc|ENSG00000106327|Q9UP52-3|TFR2;ENSG00000106327|ENST00000223051|TFR2;ENST00000465294.5_1_7:100218482-100225153:-|nuORF	nc|ENSG00000106327|Q9UP52-2|TFR2	nc|ENSG00000106327|Q9UP52-2|TFR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.2134704589844	2	379.213778	756.413003	0.01939	7.3528E-06	-0.18243	-6.9182E-05	-0.16305	-6.1829E-05	379.2137282219146	19.711	0.13954	19.711	19.626	19.766	0					8	4	2	0	0	0	0.68754	1	5138	5138		35.201	0	1	173430			25237	2433	16711	16773	25581	25581					0.025052711461171384
LQGASTQASSM	11	Unmodified	_LQGASTQASSM_					0	0	0		CCP110|p.N549Tfs*6|1|0.53|ENSG00000103540|chr16:19537310-19537310|A/-|frameshift_variant;CCP110|p.S647Afs*4|1|0.31|ENSG00000103540|chr16:19540673-19540673|A/-|frameshift_variant;CCP110|p.K639Ffs*17|1|0.29|ENSG00000103540|chr16:19537582-19537583|-/ATTTCCA|frameshift_variant;ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	CCP110|p.N549Tfs*6|1|0.53|ENSG00000103540|chr16:19537310-19537310|A/-|frameshift_variant	CCP110|p.N549Tfs*6|1|0.53|ENSG00000103540|chr16:19537310-19537310|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7533569335938	2	540.753138	1079.49172	1.9088	0.0010322	-2.1192	-0.001146	-0.21037	-0.00011376	540.7521937882724	26.499	0.27592	26.499	26.409	26.685	0					17	6	4	0	0	0	0.37057	1	9161	9161		54.722	1.7857	1	1007000			25238	418	16712	16774	25582	25582					-0.04484289401739261
LQGGQAAQVV	10	Unmodified	_LQGGQAAQVV_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7684326171875	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.052	1	34.052	33.552	34.552	0								0	0	0	0.24422	1	12650	12650		58.782	4.0056	1		+		25239	15088	16713	16775	25583	25583					0.038362857834158604
LQGNTSFAVY	10	Unmodified	_LQGNTSFAVY_					0	0	0			REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF	REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.275634765625	2	550.274564	1098.53457	0.60094	0.00033068	1.0702	0.00058893	1.6712	0.00091961	550.2753699418099	42.955	0.32143	42.955	42.85	43.171	0					14	9	2	0	0	0	0.20981	1	17159	17159		78.264	20.034	1	123150	+		25240	20129	16714	16776	25584	25584					-0.010751512820206699
LQGPRALASA	10	Unmodified	_LQGPRALASA_					0	0	0		E2F2|p.Q36Pfs*66|1|0.48|ENSG00000007968|chr1:23530687-23530688|-/G|frameshift_variant;ENSG00000007968|ENST00000361729|E2F2	E2F2|p.Q36Pfs*66|1|0.48|ENSG00000007968|chr1:23530687-23530688|-/G|frameshift_variant	E2F2|p.Q36Pfs*66|1|0.48|ENSG00000007968|chr1:23530687-23530688|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.28558349609375	2	492.285266	982.555979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.8	1	51.8	51.3	52.3	0								0	0	0	0.37702	1	15444	15444		32.812	0	1				25241	866	16715	16777	25585	25585					0.06400278537353188
LQGWGLSL	8	Unmodified	_LQGWGLSL_					0	0	0		ENST00000258991.7_1_17:62225146-62225452:-|nuORF	ENST00000258991.7_1_17:62225146-62225452:-|nuORF	ENST00000258991.7_1_17:62225146-62225452:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.24346923828125	2	437.245078	872.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.172	1	29.172	28.672	29.672	0								0	0	0	1.7419	1	9180	9180		55.504	5.4797	1				25242	8280	16716	16778	25586	25586					0.03426417214348021
LQGWGLSL	8	Unmodified	_LQGWGLSL_					0	0	0		ENST00000258991.7_1_17:62225146-62225452:-|nuORF	ENST00000258991.7_1_17:62225146-62225452:-|nuORF	ENST00000258991.7_1_17:62225146-62225452:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2425537109375	2	437.245078	872.475603	-3.0715	-0.001343	-1.9669	-0.00086004	-5.0385	-0.002203	437.24429556496483	29.249	0.33988	29.249	28.998	29.337	0					12	9	2	0	0	0	0.27512	1	9827	9827		90.777	2.1338	1	142020			25243	8280	16716	16778	25587	25587					0.03426417214348021
LQHALEDQ	8	Unmodified	_LQHALEDQ_					0	0	0		nc|ENSG00000167447|Q8ND04-3|SMG8;ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8	nc|ENSG00000167447|Q8ND04-3|SMG8	nc|ENSG00000167447|Q8ND04-3|SMG8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.23785400390625	2	477.237981	952.461409	-0.34558	-0.00016493	0.22973	0.00010964	-0.11586	-5.5291E-05	477.23797544922127	17.786	0.14418	17.786	17.689	17.834	0					5	3	2	0	0	0	0.53424	1	4522	4522		56.721	5.3856	1	171810			25244	5989	16717	16779	25588	25588					-0.016722800046181874
LQHQQLKA	8	Unmodified	_LQHQQLKA_					0	0	0			REV__PDHX|p.R464H|1|0.33|ENSG00000110435|chr11:34995057-34995057|G/A|missense_variant	REV__PDHX|p.R464H|1|0.33|ENSG00000110435|chr11:34995057-34995057|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2795715332031	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25	1	25	24.5	25.5	0								0	0	0	1.7419	1	7464	7464		33.516	0	1		+		25245	21353	16718	16780	25589	25589					0.06172295882936396
LQHQVSQI	8	Unmodified	_LQHQVSQI_					0	0	0		nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant;nc|ENSG00000100629|Q6ZU80-3|CEP128;CEP128|p.K414Nfs*34|2|0.18|ENSG00000100629|chr14:80793078-80793078|T/-|frameshift_variant	nc|ENSG00000100629|Q6ZU80-1|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7640686035156	2	476.764166	951.513779	-1.5118	-0.0007208	0.067534	3.2198E-05	-1.4443	-0.0006886	476.7640784796053	28.496	0.27004	28.496	28.43	28.7	0					21	10	3	0	0	0	0.39125	1	9202	9202		71.877	0	1	173220			25246	2051	16719	16781	25590	25590					0.036083031289877
LQHRVFIQ	8	Unmodified	_LQHRVFIQ_					0	0	0		ENST00000526586.6_1_16:2012076-2012115:-|nuORF	ENST00000526586.6_1_16:2012076-2012115:-|nuORF	ENST00000526586.6_1_16:2012076-2012115:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.8032836914062	2	520.803626	1039.5927	-1.3369	-0.00069627	0.72541	0.0003778	-0.61151	-0.00031848	520.8039864244101	26.933	0.20009	26.933	26.852	27.052	0					17	5	4	0	0	0	0.35045	1	8747	8747		76.847	76.847	1	667890			25247	10379	16720	16782	25591	25591					0.07448575153944148
LQIFLLPDK	9	Unmodified	_LQIFLLPDK_					0	0	0			REV__SLC4A9|p.L208Pfs*18|1|0.47|ENSG00000113073|chr5:140361846-140361847|-/C|frameshift_variant	REV__SLC4A9|p.L208Pfs*18|1|0.47|ENSG00000113073|chr5:140361846-140361847|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.8887634277344	3	362.890104	1085.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.119	1	17.119	16.619	17.619	0								0	0	0	0.36056	1	5028	5028		22.58	2.5829	1		+		25248	14022	16721	16783	25592	25592					0.10908363550879585
LQIGCNEIGD	10	Unmodified	_LQIGCNEIGD_					0	0	0		ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2523193359375	2	531.250231	1060.48591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.771	1	17.771	17.271	18.271	0								0	0	0	0.4201	1	4520	4520		18.262	0	1				25249	5369	16722	16784	25593	25593					-0.04191387913397193
LQIMFGLDKN	10	Unmodified	_LQIMFGLDKN_					0	0	0		ENST00000563392.5_1_16:70367501-70367651:+|nuORF;ENST00000443119.7_3_16:70405905-70406055:+|nuORF	ENST00000563392.5_1_16:70367501-70367651:+|nuORF	ENST00000563392.5_1_16:70367501-70367651:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.8148803710938	2	589.815541	1177.61653	-0.13511	-7.969E-05	0.6797	0.0004009	0.54459	0.00032121	589.8150658402858	31.886	0.16515	31.886	31.78	31.945	0					5	3	2	0	0	0	0.64162	1	12082	12082		29.17	2.1227	1	45380			25250	9593	16723	16785	25594	25594					0.03482627805442462
LQIMLSHY	8	Oxidation (M)	_LQIM(Oxidation (M))LSHY_		LQIM(1)LSHY		LQIM(60)LSHY	0	0	1		ENST00000267843.8_1_15:49716502-49716595:+|nuORF	ENST00000267843.8_1_15:49716502-49716595:+|nuORF	ENST00000267843.8_1_15:49716502-49716595:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.7611389160156	2	510.762778	1019.511	-1.7859	-0.00091218	-0.075429	-3.8526E-05	-1.8613	-0.0009507	510.76263031363123	37.756	0.30299	37.756	37.644	37.947	0					23	14	2	0	0	0	0.49887	1	13485	13485		60.294	12.378	1	127250			25251	8364	16724	16786	25595	25595		337			0.002027116798217321
LQIQNDYLFQ	10	Unmodified	_LQIQNDYLFQ_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant;PHLPP1|p.T1236Nfs*38|2|0.39|ENSG00000081913|chr18:62972653-62972654|-/A|frameshift_variant	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	641.3289184570312	2	641.327328	1280.6401	2.9613	0.0018991	-0.6301	-0.0004041	2.3312	0.001495	641.3271259543312	38.669	0.40709	38.669	38.56	38.967	0					21	8	4	0	0	0	0.12896	1	15211	15211		90.37	7.6193	1	1355900			25252	1665	16725	16787	25596	25596					0.011007648436134332
LQITSNLALP	10	Unmodified	_LQITSNLALP_					0	0	0			REV__TFDP2|p.P266L|1|0.37|ENSG00000114126|chr3:141963899-141963899|G/A|missense_variant	REV__TFDP2|p.P266L|1|0.37|ENSG00000114126|chr3:141963899-141963899|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.3173828125	2	535.316232	1068.61791	-1.3611	-0.0007286	2.8719	0.0015374	1.5109	0.00080879	535.317438241216	35.567	0.16352	35.567	35.459	35.622	0					8	6	2	0	0	0	0.39647	1	12686	12686		52.937	0	1	57499	+		25253	21634	16726	16788	25597	25597					0.08634585165827957
LQKEEKISP	9	Unmodified	_LQKEEKISP_					0	0	0		ENSG00000136492|ENST00000259008|BRIP1;BRIP1|p.A496V|1|0.12|ENSG00000136492|chr17:61784411-61784411|G/A|missense_variant;nc|ENSG00000136492|Q9BX63-2|BRIP1	ENSG00000136492|ENST00000259008|BRIP1	ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.3060913085938	2	536.305864	1070.59717	-0.47562	-0.00025508	1.1822	0.00063403	0.70661	0.00037896	536.306591974416	32.323	0.21474	32.323	32.231	32.446	0					26	9	4	0	0	0	0.085655	1	10762	10762		82.75	4.4867	1	464910			25254	4085	16727	16789	25598	25598					0.06469994786198185
LQKEIEKLE	9	Unmodified	_LQKEIEKLE_					0	0	0		tr|U7SR00|U7SR00_FUSNUIsoprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01734PE=3SV=1	tr|U7SR00|U7SR00_FUSNUIsoprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01734PE=3SV=1	tr|U7SR00|U7SR00_FUSNUIsoprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01734PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.3271484375	2	565.326796	1128.63904	0.19304	0.00010913	1.0961	0.00061965	1.2891	0.00072878	565.3274982008536	26.551	0.41854	26.551	26.443	26.862	0					25	8	4	0	0	0	0.00022968	1	9526	9526		190.62	22.364	1	2584700			25255	22718	16728	16790	25599	25599					0.07986550474720389
LQKQSRPGV	9	Unmodified	_LQKQSRPGV_					0	0	0			REV__ENSG00000185115|ENST00000332303|NSMCE3	REV__ENSG00000185115|ENST00000332303|NSMCE3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.79766845703125	2	506.79854	1011.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.107	1	24.107	23.607	24.607	0								0	0	0	0.28996	1	7068	7068		37.159	11.709	1		+		25256	17009	16729	16791	25600	25600					0.0771996742871579
LQKQTSDPI	9	Unmodified	_LQKQTSDPI_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2825317382812	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.647	1	25.647	25.147	26.147	0								0	0	0	0.24724	1	8003	8003		44.117	1.2525	1		+		25257	12991	16730	16792	25601	25601					0.03709135235044414
LQKVVGNAV	9	Unmodified	_LQKVVGNAV_					0	0	0			REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2857971191406	2	464.284734	926.554916	0.57299	0.00026603	-0.63726	-0.00029587	-0.064273	-2.9841E-05	464.2846870771583	35.156	0.47411	35.156	34.993	35.467	0					23	12	3	0	0	0	0.26904	1	13224	13224		53.351	2.016	1	1138500	+		25258	13858	16731	16793	25602	25602					0.08870064168468161
LQLFSPVFC	9	Unmodified	_LQLFSPVFC_					0	0	0		ENST00000294256.12_2_11:64895574-64895820:-|nuORF	ENST00000294256.12_2_11:64895574-64895820:-|nuORF	ENST00000294256.12_2_11:64895574-64895820:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.275390625	2	527.275521	1052.53649	0.51667	0.00027243	-0.49001	-0.00025837	0.026664	1.4059E-05	527.2751439230592	17.903	0.10055	17.903	17.855	17.955	0					4	2	2	0	0	0	0.51817	1	4591	4591		30.504	0	1	182570			25259	8444	16732	16794	25603	25603					0.012321862022645291
LQLFTVSVPGI	11	Unmodified	_LQLFTVSVPGI_					0	0	0			REV__ENST00000221566.6_1_19:2755225-2755636:-|nuORF	REV__ENST00000221566.6_1_19:2755225-2755636:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.9034423828125	3	391.90078	1172.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.991	1	20.991	20.491	21.491	0								0	0	0	0.1711	1	6761	6761		74.165	11.999	1		+		25260	17890	16733	16795	25604	25604					0.10107731234052153
LQLGGPATPQ	10	Unmodified	_LQLGGPATPQ_					0	0	0			REV__TNR|p.L364P|1|0.3|ENSG00000116147|chr1:175396693-175396693|A/G|missense_variant	REV__TNR|p.L364P|1|0.3|ENSG00000116147|chr1:175396693-175396693|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.849853515625	3	327.850308	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.806	1	16.806	16.306	17.306	0								0	0	0	0.4201	1	4878	4878		14.086	0	1		+		25261	21658	16734	16796	25605	25605					0.03805169926170038
LQLHNNSIK	9	Unmodified	_LQLHNNSIK_					0	0	0			REV__ENST00000409784.7_1_2:65318132-65325105:-|nuORF	REV__ENST00000409784.7_1_2:65318132-65325105:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.20489501953125	3	356.204974	1065.59309	1.3887	0.00049466	-1.9442	-0.00069255	-0.55555	-0.00019789	356.20438972409204	20.984	0.61299	20.984	20.875	21.488	0					27	12	4	0	0	0	0.25716	1	6744	6744		45.022	9.8702	1	25123000	+		25262	19002	16735	16797	25606	25606					0.06291950083118536
LQLKPPQP	8	Unmodified	_LQLKPPQP_					0	0	0			REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7812194824219	2	460.781828	919.549102	-0.69783	-0.00032155	0.11672	5.3783E-05	-0.58111	-0.00026777	460.78193338465945	33.097	1.2885	33.097	32.127	33.415	0					64	33	3	0	0	0	0.54629	1	12254	12254		55.504	7.5886	1	285260	+		25263	17619	16736	16798	25607	25607					0.08610965656794178
LQLNEKEL	8	Unmodified	_LQLNEKEL_					0	0	0			REV__CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant;REV__CCDC88A|p.T678Hfs*8|1|0.16|ENSG00000115355|chr2:55334789-55334789|T/-|frameshift_variant	REV__CCDC88A|p.T678Hfs*8|1|0.16|ENSG00000115355|chr2:55334789-55334789|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7791442871094	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.652	1	26.652	26.152	27.152	0								0	0	0	1.7419	1	8407	8407		93.195	2.8256	1		+		25264	12368;12370	16737	16799	25608	25608					0.05106036723384477
LQLVLVAGEQ	10	Unmodified	_LQLVLVAGEQ_					0	0	0			REV__ENST00000318560.5_1_9:133710820-133729475:+|nuORF	REV__ENST00000318560.5_1_9:133710820-133729475:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.31640625	2	535.316232	1068.61791	1.8797	0.0010062	-0.42146	-0.00022562	1.4582	0.00078059	535.3163379511341	35.709	0.41369	35.709	35.518	35.931	0					13	8	3	0	0	0	0.57211	1	13808	13808		25.574	0	1	563810	+		25265	18315	16738	16800	25609	25609					0.08634585165850694
LQMERRARP	9	Oxidation (M)	_LQM(Oxidation (M))ERRARP_		LQM(1)ERRARP		LQM(57)ERRARP	0	0	1		ENST00000262585.6_3_8:142205376-142205649:+|nuORF	ENST00000262585.6_3_8:142205376-142205649:+|nuORF	ENST00000262585.6_3_8:142205376-142205649:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.8209838867188	2	586.819481	1171.62441	1.4264	0.00083707	-1.529	-0.00089728	-0.1026	-6.0208E-05	586.8186372123138	37.071	0.8842	37.071	36.42	37.304	0					41	26	2	0	0	0	0.24095	1	14328	14328		56.721	56.721	1	204800			25266	8308	16739	16801	25610	25610		334			0.045461998455721186
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	604.8349609375	2	604.83532	1207.65609	0.14891	9.0069E-05	-0.32327	-0.00019552	-0.17435	-0.00010546	604.83485889484	35.963	0.1704	35.963	35.891	36.062	0					14	8	2	0	0	0	0.33468	1	11784	11784		63.426	24.174	1	148340			25267	3356	16740	16802	25611	25611					0.060564710805238064
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.835205078125	2	604.83532	1207.65609	-0.43959	-0.00026588	0.48743	0.00029481	0.047836	2.8933E-05	604.8355097963055	36.244	0.56446	36.244	35.855	36.419	0					20	15	2	0	0	0	0.030421	1	13627	13627		117.81	53.604	1	1216100			25268	3356	16740	16802	25612	25612					0.060564710805238064
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.8349609375	2	604.83532	1207.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.176	1	36.176	35.676	36.676	0								0	0	0	0.35404	1	14069	14069		42.338	0.91146	1				25269	3356	16740	16802	25613	25613					0.060564710805238064
LQNNQLEKI	9	Unmodified	_LQNNQLEKI_					0	0	0		PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant;PODN|p.I380Sfs*55|1|0.26|ENSG00000174348|chr1:53078499-53078499|C/-|frameshift_variant;PODN|p.R543Vfs*77|1|0.42|ENSG00000174348|chr1:53078989-53078989|C/-|frameshift_variant;ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN	PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant	PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3097534179688	2	550.308938	1098.60332	0.54628	0.00030062	0.93893	0.0005167	1.4852	0.00081732	550.3096086550588	32.941	0.12777	32.941	32.854	32.981	0					5	3	2	0	0	0	0.0049871	1	12142	12142		158.07	12.919	1	309630			25270	6485	16741	16803	25614	25614					0.05796513017708094
LQNRLPLLPG	10	Unmodified	_LQNRLPLLPG_					0	0	0		ENST00000291574.8_1_21:45518287-45518356:+|nuORF	ENST00000291574.8_1_21:45518287-45518356:+|nuORF	ENST00000291574.8_1_21:45518287-45518356:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	374.2330627441406	3	374.232752	1119.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.981	1	31.981	31.481	32.481	0								0	0	0	0.41137	1	10643	10643		27.047	7.0168	1				25271	8437	16742	16804	25615	25615					0.12137686530991232
LQPDISIGKQ	10	Unmodified	_LQPDISIGKQ_					0	0	0		PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant;ENSG00000144407|ENST00000272847|PTH2R	PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant	PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.8782043457031	3	366.876634	1097.60807	3.1641	0.0011608	0.95468	0.00035025	4.1188	0.0015111	366.8771024846533	14.483	0.51866	14.483	14.375	14.894	0					20	10	3	0	0	0	0.52275	1	3624	3624		55.084	55.084	1	3388500			25272	4615	16743	16805	25616	25616					0.06317397160478322
LQPEKSADK	9	Unmodified	_LQPEKSADK_					0	0	0			REV__nc|ENSG00000129682|Q92913-4|FGF13	REV__nc|ENSG00000129682|Q92913-4|FGF13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2743225097656	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.435	1	23.435	22.935	23.935	0								0	0	0	0.3368	1	7152	7152		27.882	1.1893	1		+		25273	21016	16744	16806	25617	25617					0.027888487179893673
LQPGSFLTALT	11	Unmodified	_LQPGSFLTALT_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.21759033203125	3	383.216768	1146.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.313	1	44.313	43.813	44.813	0								0	0	0	0.45674	1	16626	16626		24.232	3.3947	1				25274	3355	16745	16807	25618	25618					0.06102567820266813
LQPIISVL	8	Unmodified	_LQPIISVL_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.78656005859375	2	441.786579	881.558604	0.49726	0.00021968	-0.19888	-8.7864E-05	0.29837	0.00013182	441.7861066501567	42.649	0.17087	42.649	42.596	42.767	0					10	8	2	0	0	0	0.64096	1	16739	16739		42.474	0	1	40308	+		25275	22168	16746	16808	25619	25619					0.11308733942325944
LQPPDLAKS	9	Unmodified	_LQPPDLAKS_					0	0	0			REV__DHX29|p.L1034I|1|0.35|ENSG00000067248|chr5:55269607-55269607|G/T|missense_variant	REV__DHX29|p.L1034I|1|0.35|ENSG00000067248|chr5:55269607-55269607|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7739562988281	2	484.7742	967.533846	0.036315	1.7604E-05	-0.55651	-0.00026978	-0.5202	-0.00025218	484.77388676437613	39.736	0.1622	39.736	39.69	39.852	0					14	9	2	0	0	0	0.41113	1	12890	12890		40.778	0	1	87980	+		25276	12702	16747	16809	25620	25620					0.04878054068944948
LQPPLPQATM	10	Oxidation (M)	_LQPPLPQATM(Oxidation (M))_		LQPPLPQATM(1)		LQPPLPQATM(53)	0	0	1			REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF	REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.294189453125	2	556.294442	1110.57433	1.1297	0.00062845	0.15193	8.452E-05	1.2816	0.00071297	556.2944287834451	31.844	0.15651	31.844	31.778	31.935	0					7	5	2	0	0	0	0.43008	1	11015	11015		52.937	12.879	1	50206	+		25277	15415	16748	16810	25621	25621		594			0.023466523970455455
LQPPSILYG	9	Unmodified	_LQPPSILYG_					0	0	0		ENST00000521325.1_1_8:141565925-141566322:-|nuORF;AGO2|p.G422Afs*46|1|0.4|ENSG00000123908|chr8:140555900-140555900|C/-|frameshift_variant;AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2	ENST00000521325.1_1_8:141565925-141566322:-|nuORF	ENST00000521325.1_1_8:141565925-141566322:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2775573730469	2	494.279118	986.543683	-0.045821	-2.2648E-05	-3.4837	-0.0017219	-3.5295	-0.0017446	494.277567422801	17.326	1.0075	17.326	17.217	18.224	0					42	20	5	0	0	0	0.50461	1	5297	5297		31.955	5.2619	1	35334000			25278	94	16749	16811	25622	25622					0.049872420743326984
LQPSRCPSPA	10	Unmodified	_LQPSRCPSPA_					0	0	0			REV__ENST00000396868.7_1_16:3283812-3285267:-|nuORF	REV__ENST00000396868.7_1_16:3283812-3285267:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2689819335938	2	528.268758	1054.52296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.431	1	16.431	15.931	16.931	0								0	0	0	0.39665	1	4694	4694		31.53	3.6476	1		+		25279	18902	16750	16812	25623	25623					-0.002116715769716393
LQPVQFSQP	9	Unmodified	_LQPVQFSQP_					0	0	0		HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant;nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2769775390625	2	522.279649	1042.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.358	1	24.358	23.858	24.858	0								0	0	0	0.17378	1	7582	7582		54.776	5.2403	1				25280	3966	16751	16813	25624	25624					0.025174564432290936
LQQAYAKEI	9	Unmodified	_LQQAYAKEI_					0	0	0			REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2	REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.29296875	2	532.292756	1062.57096	1.713	0.00091181	-1.2459	-0.00066321	0.46705	0.00024861	532.2921513534051	28.182	0.29777	28.182	28.084	28.381	0					12	6	2	0	0	0	0.012231	1	10307	10307		136.27	35.015	1	1557300	+		25281	13529	16752	16814	25625	25625					0.042177256146942455
LQQDLTSM	8	Unmodified	_LQQDLTSM_					0	0	0		ENSG00000147475|ENST00000519638|ERLIN2;ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2284240722656	2	468.228768	934.442982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.91	1	32.91	32.41	33.41	0								0	0	0	1.7419	1	12450	12450		60.972	5.4677	1				25282	4783	16753	16815	25626	25626					-0.026861579708338468
LQQGVPETIA	10	Unmodified	_LQQGVPETIA_					0	0	0		ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2926025390625	2	528.290214	1054.56587	1.6289	0.00086052	2.258	0.0011929	3.8869	0.0020534	528.2904078890788	42.244	0.21311	42.244	42.17	42.383	0					6	5	2	0	0	0	0.61187	1	16868	16868		32.812	0.85756	1	45922			25283	4563	16754	16816	25627	25627					0.040774217520947786
LQQIPTSEN	9	Unmodified	_LQQIPTSEN_					0	0	0			REV__ENST00000490814.6_1_5:888486-889814:-|nuORF	REV__ENST00000490814.6_1_5:888486-889814:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2643432617188	2	515.264196	1028.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.383	1	23.383	22.883	23.883	0								0	0	0	0.30504	1	8050	8050		34.173	4.331	1		+		25284	12962	16755	16817	25628	25628					0.0007225833833217621
LQQKLNVGK	9	Unmodified	_LQQKLNVGK_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5;HDAC5|p.L865P|1|0.42|ENSG00000108840|chr17:44082598-44082598|A/G|missense_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.3162841796875	2	514.316566	1026.61858	0.07985	4.1068E-05	-1.1714	-0.0006025	-1.0916	-0.00056143	514.3166219773013	22.548	0.10016	22.548	22.494	22.594	0					5	3	2	0	0	0	0.48389	1	6402	6402		34.173	2.5383	1	51348			25285	2553	16756	16818	25629	25629					0.10633424605566688
LQQLSPLAI	9	Unmodified	_LQQLSPLAI_					0	0	0			REV__TET3|p.Q379Rfs*162|2|0.23|ENSG00000187605|chr2:74047047-74047047|C/-|frameshift_variant	REV__TET3|p.Q379Rfs*162|2|0.23|ENSG00000187605|chr2:74047047-74047047|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.8003234863281	2	491.800217	981.585882	0.57931	0.0002849	-0.7924	-0.0003897	-0.21309	-0.0001048	491.7997180953506	40.393	0.33334	40.393	40.317	40.65	0					18	13	2	0	0	0	0.22377	1	15910	15910		58.782	5.4305	1	247230	+		25286	21632	16757	16819	25630	25630					0.09435217482678127
LQQLSPLAI	9	Unmodified	_LQQLSPLAI_					0	0	0			REV__TET3|p.Q379Rfs*162|2|0.23|ENSG00000187605|chr2:74047047-74047047|C/-|frameshift_variant	REV__TET3|p.Q379Rfs*162|2|0.23|ENSG00000187605|chr2:74047047-74047047|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.8000183105469	2	491.800217	981.585882	0.81771	0.00040215	-1.1831	-0.00058184	-0.36537	-0.00017969	491.79969771886664	40.35	0.24649	40.35	40.257	40.503	0					10	5	2	0	0	0	0.12239	1	16026	16026		74.255	10.048	1	200910	+		25287	21632	16757	16819	25631	25631					0.09435217482678127
LQQVSLSQ	8	Unmodified	_LQQVSLSQ_					0	0	0		nc|ENSG00000167920|Q8N816-2|KRT10-AS1;nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816-2|KRT10-AS1	nc|ENSG00000167920|Q8N816-2|KRT10-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7503356933594	2	451.750724	901.486896	-0.013252	-5.9866E-06	0.020302	9.1713E-06	0.0070497	3.1847E-06	451.750687546795	20.071	0.18173	20.071	19.997	20.179	0					10	5	3	0	0	0	0.53424	1	5304	5304		56.721	0	1	211520			25288	11633	16758	16820	25632	25632					0.03221194517800541
LQRAEEEEE	9	Unmodified	_LQRAEEEEE_					0	0	0			REV__SIX5|p.H691Tfs*4|1|0.42|ENSG00000177045|chr19:45765650-45765650|G/-|frameshift_variant	REV__SIX5|p.H691Tfs*4|1|0.42|ENSG00000177045|chr19:45765650-45765650|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.7586669921875	2	566.759475	1131.5044	-1.1977	-0.00067882	-0.22398	-0.00012694	-1.4217	-0.00080577	566.7594176118752	34.346	0.24413	34.346	34.245	34.49	0					21	8	4	0	0	0	0.25716	1	12139	12139		54.776	4.7518	1	369160	+		25289	16683	16759	16821	25633	25633					-0.056095547378617994
LQRAKPSN	8	Unmodified	_LQRAKPSN_					0	0	0		ENSG00000116273|ENST00000377648|PHF13	ENSG00000116273|ENST00000377648|PHF13	ENSG00000116273|ENST00000377648|PHF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.26361083984375	2	457.264333	912.514114	-0.48449	-0.00022154	-0.18362	-8.3964E-05	-0.66811	-0.0003055	457.2642300629129	54.697	0.13309	54.697	54.635	54.768	0					12	8	2	0	0	0	0.78978	1	19793	19793		21.96	0	1	57215			25290	2978	16760	16822	25634	25634					0.054357228488470355
LQRALHDKQL	10	Unmodified	_LQRALHDKQL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000489156.1_1_6:152599163-152623219:-|nuORF;ENST00000367256.9_1_6:152443573-152639413:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.356201171875	2	611.356754	1220.69895	-0.80796	-0.00049395	-0.28808	-0.00017612	-1.096	-0.00067007	611.3566036015508	52.649	0.48621	52.649	52.467	52.953	0					48	30	2	0	0	0	0.71938	1	18689	18689		19.104	0.84144	1	76336			25291	3690;8912	16761	16823	25635	25635					0.09743285928584555
LQRLCYMG	8	Unmodified	_LQRLCYMG_					0	0	0		GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.L1167Sfs*9|1|0.07|ENSG00000077235|chr16:27488566-27488566|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.74481201171875	2	492.243698	982.472843	-1.2646	-0.00062249	-0.10695	-5.2646E-05	-1.3716	-0.00067514	492.24352662184486	26.301	0.23952	26.301	26.177	26.416	0					18	7	3	0	0	0	0.67475	1	8286	8286		37.028	1.8278	1	171930			25292	11174	16762	16824	25636	25636					-0.019094975064945174
LQRLHSQV	8	Unmodified	_LQRLHSQV_					0	0	0		nc|ENSG00000135127|Q6ZP65-2|BICDL1;ENSG00000135127|ENST00000548673|BICDL1;ENST00000550197.1_1_12:120512327-120527926:+|nuORF	nc|ENSG00000135127|Q6ZP65-2|BICDL1	nc|ENSG00000135127|Q6ZP65-2|BICDL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7828369140625	2	490.785433	979.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.53	1	32.53	32.03	33.03	0								0	0	0	1.7419	1	12372	12372		19.997	0.89325	1				25293	3970	16763	16825	25637	25637					0.06571698257221215
LQRLKLKCIFC	11	Unmodified	_LQRLKLKCIFC_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	682.9003295898438	2	682.898885	1363.78322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.25	1	39.25	38.75	39.75	0								0	0	0	0.44646	1	13202	13202		26.693	1.1189	1				25294	2468	16764	16826	25638	25638					0.11587777429485868
LQSGIVLLQ	9	Unmodified	_LQSGIVLLQ_					0	0	0		ENST00000554990.5_1_14:50886739-50915587:-|nuORF;ENSG00000012983|ENST00000682126|MAP4K5	ENST00000554990.5_1_14:50886739-50915587:-|nuORF	ENST00000554990.5_1_14:50886739-50915587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.8000793457031	2	485.800217	969.585882	0.67119	0.00032607	-1.5063	-0.00073174	-0.83507	-0.00040568	485.79957541659655	40.712	0.51572	40.712	40.477	40.993	0					20	18	2	0	0	0	0.55379	1	15453	15453		26.693	1.1189	1	46036			25295	1060	16765	16827	25639	25639					0.09987217482705546
LQSLFVGKQHK	11	Unmodified	_LQSLFVGKQHK_					0	0	0			REV__ENST00000482704.1_1_2:96689607-96690664:-|nuORF	REV__ENST00000482704.1_1_2:96689607-96690664:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	642.8745727539062	2	642.874779	1283.73501	-0.50627	-0.00032547	1.7873	0.001149	1.2811	0.00082356	642.8751537639126	24.188	0.36461	24.188	23.979	24.343	0					11	7	2	0	0	0	0.41029	1	8424	8424		41.427	0	1	206700	+		25296	17074	16766	16828	25640	25640					0.10448743105439462
LQSLKVDTQ	9	Unmodified	_LQSLKVDTQ_					0	0	0		nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;ENSG00000155066|ENST00000317620|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2910766601562	2	516.290214	1030.56587	1.1445	0.00059088	0.38042	0.00019641	1.5249	0.00078729	516.2904239779728	26.486	0.14355	26.486	26.396	26.539	0					5	3	2	0	0	0	0.063823	1	8544	8544		90.37	0	1	200330			25297	5114	16767	16829	25641	25641					0.051814217520814054
LQSPKNLK	8	Unmodified	_LQSPKNLK_					0	0	0			REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2843322753906	2	464.284734	926.554916	0.69237	0.00032146	-1.5142	-0.00070301	-0.8218	-0.00038155	464.28402945533094	35.751	0.2957	35.751	35.532	35.828	0					12	8	2	0	0	0	0.72381	1	13890	13890		30.504	1.3541	1	192770	+		25298	16611	16768	16830	25642	25642					0.08870064168468161
LQSSRVGSF	9	Unmodified	_LQSSRVGSF_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENST00000276898.3_1_9:5713908-5748617:+|nuORF	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.76171875	2	490.761623	979.508694	-0.49997	-0.00024536	0.039683	1.9475E-05	-0.46028	-0.00022589	490.7616267033558	27.859	0.22884	27.859	27.736	27.965	0					10	5	3	0	0	0	0.19605	1	9801	9801		62.107	0	1	338930			25299	2467	16769	16831	25643	25643					0.018119992663855555
LQTAINRL	8	Unmodified	_LQTAINRL_					0	0	0			REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7767028808594	2	464.782359	927.550165	-0.4404	-0.00020469	-2.4926	-0.0011585	-2.933	-0.0013632	464.78102738560375	35.997	0.26429	35.997	35.854	36.118	0					18	12	2	0	0	0	0.59773	1	11778	11778		49.442	3.4896	1	272910	+		25300	13452	16770	16832	25644	25644					0.08349180025709302
LQTCMEVL	8	Unmodified	_LQTCMEVL_					0	0	0		ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7311706542969	2	468.730089	935.445625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.491	1	25.491	24.991	25.991	0								0	0	0	1.7419	1	7934	7934		42.396	6.7778	1				25301	5661	16771	16833	25645	25645					-0.024680258375383346
LQTHPNKIK	9	Unmodified	_LQTHPNKIK_					0	0	0		TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.21|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1	TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.217041015625	3	360.217102	1077.62948	-0.066079	-2.3803E-05	-0.033529	-1.2078E-05	-0.099608	-3.5881E-05	360.21709588220426	25.676	0.16397	25.676	25.616	25.78	0					8	2	4	0	0	0	0.1424	1	9030	9030		69.628	7.5202	1	1256800			25302	2288	16772	16834	25646	25646					0.0937682697983746
LQTLEQLQ	8	Unmodified	_LQTLEQLQ_					0	0	0			REV__TMEM102|p.S127Hfs*37|1|0.22|ENSG00000181284|chr17:7436355-7436355|T/-|frameshift_variant	REV__TMEM102|p.S127Hfs*37|1|0.22|ENSG00000181284|chr17:7436355-7436355|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.771484375	2	486.771657	971.528761	0.63737	0.00031025	-0.3483	-0.00016954	0.28907	0.00014071	486.77098314638704	40.388	0.19943	40.388	40.273	40.473	0					15	8	3	0	0	0	0.37144	1	15912	15912		74.255	0	1	149800	+		25303	16842	16773	16835	25647	25647					0.04185750206340799
LQTLQGPKQ	9	Unmodified	_LQTLQGPKQ_					0	0	0		FBXW7|p.N621Kfs*23|1|0.21|ENSG00000109670|chr4:152323142-152323143|-/T|frameshift_variant	FBXW7|p.N621Kfs*23|1|0.21|ENSG00000109670|chr4:152323142-152323143|-/T|frameshift_variant	FBXW7|p.N621Kfs*23|1|0.21|ENSG00000109670|chr4:152323142-152323143|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.19775390625	3	338.197708	1011.57129	-0.018627	-6.2995E-06	0.24634	8.3311E-05	0.22771	7.7012E-05	338.1977937227012	19.153	0.16479	19.153	19.047	19.212	0					6	3	2	0	0	0	0.48389	1	5881	5881		27.047	0	1	832720			25304	11136	16774	16836	25648	25648					0.06597145334569632
LQTSSGVIV	9	Unmodified	_LQTSSGVIV_					0	0	0			REV__nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	REV__nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.26123046875	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.541	1	17.541	17.041	18.041	0								0	0	0	0.063485	1	4393	4393		82.305	5.5309	1		+		25305	14429	16775	16837	25649	25649					0.05214365177619129
LQVKFSGTK	9	Unmodified	_LQVKFSGTK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2969055175781	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.432	1	49.432	48.932	49.932	0								0	0	0	0.28996	1	18582	18582		37.159	5.6293	1				25306	5134;23079	16776	16838	25650	25650					0.07810333339944009
LQVPNSVLVT	10	Unmodified	_LQVPNSVLVT_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3165893554688	2	535.316232	1068.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.769	1	35.769	35.269	36.269	0								0	0	0	0.2063	1	13886	13886		60.118	14.146	1		+		25307	15181	16777	16839	25651	25651					0.08634585165850694
LQVRIRAKC	9	Unmodified	_LQVRIRAKC_					0	0	0			REV__ENST00000531864.6_1_16:31765215-31805195:+|nuORF	REV__ENST00000531864.6_1_16:31765215-31805195:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.3359375	2	543.83186	1085.64917	3.659	0.0019899	-2.6664	-0.0014501	0.99259	0.0005398	543.8305138553125	19.467	0.51554	19.467	19.36	19.876	0					34	10	5	0	0	0	0.33044	1	6108	6108		24.203	0	1	7555400	+		25308	20066	16778	16840	25652	25652					0.10976879718964483
LQVSKGPQ	8	Unmodified	_LQVSKGPQ_					0	0	0			REV__nc|ENSG00000105371|Q14773-2|ICAM4	REV__nc|ENSG00000105371|Q14773-2|ICAM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.74755859375	2	428.747985	855.481417	-0.52665	-0.0002258	-0.75107	-0.00032202	-1.2777	-0.00054782	428.74760778959035	19.189	0.21447	19.189	19.083	19.297	0					5	4	2	0	0	0	0.53424	1	6034	6034		56.721	3.3696	1	131320	+		25309	20962	16779	16841	25653	25653					0.04789515725997262
LQYLEEAPK	9	Unmodified	_LQYLEEAPK_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.1964416503906	3	364.197485	1089.57063	-0.7026	-0.00025588	-1.5406	-0.00056109	-2.2432	-0.00081697	364.1969895770567	14.41	0.12742	14.41	14.315	14.443	0					10	6	2	0	0	0	0.59802	1	3117	3117		29.17	7.4843	1	71494			25310	1001	16780	16842	25654	25654					0.029423058948623293
LQYVLDKL	8	Unmodified	_LQYVLDKL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7927551269531	2	496.294768	990.574983	-0.35084	-0.00017412	-1.5457	-0.0007671	-1.8965	-0.00094122	496.29455035396853	36.608	0.37945	36.608	36.485	36.864	0					28	10	4	0	0	0	0.46013	1	13872	13872		64.207	0	1	562900			25311	3989	16781	16843	25655	25655					0.0793181510841805
LRADSPAVD	9	Unmodified	_LRADSPAVD_					0	0	0			REV__ENST00000588552.5_1_19:5286204-5340720:-|nuORF	REV__ENST00000588552.5_1_19:5286204-5340720:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.24554443359375	2	472.245806	942.47706	-0.73384	-0.00034655	0.45401	0.0002144	-0.27983	-0.00013215	472.24601346601037	23.939	0.31664	23.939	23.779	24.096	0					17	6	4	0	0	0	0.1115	1	8300	8300		76.774	1.7308	1	1387800	+		25312	20503	16782	16844	25656	25656					0.0035200651242348613
LRAEGSPLQ	9	Unmodified	_LRAEGSPLQ_					0	0	0			REV__ENSG00000279270|ENST00000624978|OR52R1	REV__ENSG00000279270|ENST00000624978|OR52R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7683410644531	2	485.769448	969.524344	-0.24671	-0.00011985	-0.11425	-5.5499E-05	-0.36096	-0.00017534	485.76922147510646	23.164	0.23419	23.164	23.033	23.267	0					9	5	2	0	0	0	0.50858	1	7019	7019		31.53	1.2121	1	146810	+		25313	17845	16783	16845	25657	25657					0.03836285783427229
LRAFFVEE	8	Unmodified	_LRAFFVEE_					0	0	0		ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7698669433594	2	505.768917	1009.52328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.942	1	13.942	13.442	14.442	0								0	0	0	1.7419	1	3289	3289		30.504	0	1				25314	6068	16784	16846	25658	25658					0.018900714145274833
LRAHRLPGE	9	Unmodified	_LRAHRLPGE_					0	0	0			REV__ENST00000381168.7_1_11:2187868-2190906:-|nuORF	REV__ENST00000381168.7_1_11:2187868-2190906:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.803466796875	2	524.804157	1047.59376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.036	1	14.036	13.536	14.536	0								0	0	0	0.35899	1	2910	2910		23.042	2.0956	1		+		25315	18781	16785	16847	25659	25659					0.07186789522847903
LRASWLRR	8	Unmodified	_LRASWLRR_					0	0	0		ENST00000255499.2_2_X:105969946-105970231:+|nuORF	ENST00000255499.2_2_X:105969946-105970231:+|nuORF	ENST00000255499.2_2_X:105969946-105970231:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.3223876953125	2	529.322517	1056.63048	0.89731	0.00047497	-1.0577	-0.00055989	-0.16043	-8.4919E-05	529.3218919216672	28.105	0.14477	28.105	28.012	28.157	0					6	3	2	0	0	0	0.46013	1	10249	10249		53.351	0.41475	1	297070			25316	8258	16786	16848	25660	25660					0.10443086139412117
LRASWLRR	8	Unmodified	_LRASWLRR_					0	0	0		ENST00000255499.2_2_X:105969946-105970231:+|nuORF	ENST00000255499.2_2_X:105969946-105970231:+|nuORF	ENST00000255499.2_2_X:105969946-105970231:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.322265625	2	529.322517	1056.63048	0.73295	0.00038797	-1.4234	-0.00075343	-0.69043	-0.00036546	529.3218925257561	28.033	0.21795	28.033	27.959	28.177	0					9	4	3	0	0	0	0.67836	1	10139	10139		26.693	0	1	290970			25317	8258	16786	16848	25661	25661					0.10443086139412117
LRAVCLCGI	9	Carbamidomethyl (C)	_LRAVC(Carbamidomethyl (C))LCGI_	LRAVC(0.852)LC(0.148)GI		LRAVC(7.6)LC(-7.6)GI		0	1	0		ENST00000368190.7_1_1:157493863-157494031:-|nuORF	ENST00000368190.7_1_1:157493863-157494031:-|nuORF	ENST00000368190.7_1_1:157493863-157494031:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7732238769531	2	502.772622	1003.53069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.431	1	32.431	31.931	32.931	0								0	0	0	0.16876	1	11906	11906		55.504	10.973	2				25318	8921	16787	16849	25662	25662	378				0.0290676441894675
LRAVESNSG	9	Unmodified	_LRAVESNSG_					0	0	0			REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7451477050781	2	466.743431	931.472308	-0.50177	-0.0002342	2.5099	0.0011715	2.0082	0.00093731	466.7450185305319	43.043	0.17759	43.043	42.994	43.171	0					5	4	2	0	0	0	0.47038	1	17221	17221		35.618	1.4457	1	122910	+		25319	16746	16788	16850	25663	25663					0.0038312236968067737
LRCGLTAVL	9	Unmodified	_LRCGLTAVL_					0	0	0			REV__ENST00000437099.6_1_17:9819253-9819832:-|nuORF	REV__ENST00000437099.6_1_17:9819253-9819832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2841491699219	2	473.281137	944.547722	-0.12206	-5.7767E-05	3.9366	0.0018631	3.8146	0.0018054	473.2821603179115	36.398	0.33978	36.398	36.324	36.663	0					11	9	2	0	0	0	0.12239	1	14181	14181		74.255	2.3776	1	127280	+		25320	19211	16789	16851	25664	25664					0.07323008296384614
LRCLDHESI	9	Unmodified	_LRCLDHESI_					0	0	0			REV__ENST00000543687.1_1_12:124241315-124242576:+|nuORF	REV__ENST00000543687.1_1_12:124241315-124242576:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7761840820312	2	543.274041	1084.53353	2.0021	0.0010877	-4.028	-0.0021883	-2.0259	-0.0011006	543.7746296259044	37.142	0.554	37.142	36.812	37.366	0					19	11	4	0	0	0	0.22377	1	14493	14493		58.782	14.665	1	234990	+		25321	20153	16790	16852	25665	25665					-0.005356889225595296
LRDCMKKL	8	Carbamidomethyl (C),Oxidation (M)	_LRDC(Carbamidomethyl (C))M(Oxidation (M))KKL_	LRDC(1)MKKL	LRDCM(1)KKL	LRDC(91)MKKL	LRDCM(91)KKL	0	1	1		nc|ENSG00000118733|Q96PB7-6|OLFM3;nc|ENSG00000118733|Q96PB7-4|OLFM3;nc|ENSG00000118733|Q96PB7-2|OLFM3;nc|ENSG00000118733|Q96PB7-5|OLFM3;ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3	nc|ENSG00000118733|Q96PB7-6|OLFM3	nc|ENSG00000118733|Q96PB7-6|OLFM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2902221679688	2	540.288637	1078.56272	1.9367	0.0010464	0.8927	0.00048231	2.8294	0.0015287	540.2888662183212	43.68	0.17524	43.68	43.61	43.786	0					15	9	2	0	0	0	0.27512	1	16442	16442		90.777	11.064	1	79790			25322	3084	16791	16853	25666	25666	118	135			0.026581321021012627
LRDGLRGHGL	10	Unmodified	_LRDGLRGHGL_					0	0	0			REV__ENST00000447654.5_1_6:34213577-34213877:+|nuORF	REV__ENST00000447654.5_1_6:34213577-34213877:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.2131652832031	3	365.212351	1092.61522	3.1488	0.00115	-0.72444	-0.00026457	2.4244	0.00088542	365.2120589159659	27.52	0.4739	27.52	27.272	27.746	0					23	9	4	0	0	0	0.68774	1	9879	9879		23.523	23.523	1	898670	+		25323	19290	16792	16854	25667	25667					0.072621745515562
LRDHLTAR	8	Unmodified	_LRDHLTAR_					0	0	0		NWD1|p.L337Wfs*14|2|0.28|ENSG00000188039|chr19:16749646-16749646|C/-|frameshift_variant;NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant;ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	NWD1|p.L337Wfs*14|2|0.28|ENSG00000188039|chr19:16749646-16749646|C/-|frameshift_variant	NWD1|p.L337Wfs*14|2|0.28|ENSG00000188039|chr19:16749646-16749646|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2846984863281	2	491.283057	980.551562	3.4754	0.0017074	-0.099056	-4.8664E-05	3.3763	0.0016587	491.28290346218085	38.811	0.20089	38.811	38.733	38.934	0					19	11	2	0	0	0	0.59773	1	13065	13065		49.442	0	1	103250			25324	7231	16793	16855	25668	25668					0.06050814114462355
LRDLSNGSEED	11	Unmodified	_LRDLSNGSEED_					0	0	0		KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant;KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.19000244140625	3	412.189718	1233.54732	0.91158	0.00037574	-1.108	-0.00045671	-0.19642	-8.0962E-05	412.18959042753073	24.861	0.35353	24.861	24.707	25.06	0					24	7	6	0	0	0	0.24536	1	8639	8639		53.013	2.2216	1	5041700			25325	4237	16794	16856	25669	25669					-0.060107846804157816
LRDPQDIYG	9	Unmodified	_LRDPQDIYG_					0	0	0			REV__ENST00000585033.1_1_18:641361-657928:-|nuORF	REV__ENST00000585033.1_1_18:641361-657928:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7742309570312	2	538.772188	1075.52982	2.0479	0.0011034	1.4892	0.00080236	3.5372	0.0019057	538.7732087357559	26.797	0.21423	26.797	26.688	26.902	0					12	4	4	0	0	0	0.26904	1	9526	9526		53.351	2.016	1	1314900	+		25326	20471	16795	16857	25670	25670					-0.004920354247587966
LRDSAVPAP	9	Unmodified	_LRDSAVPAP_					0	0	0		ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.2584533691406	2	463.258717	924.50288	-0.44289	-0.00020517	-0.014896	-6.9007E-06	-0.45779	-0.00021207	463.2585922278404	16.45	0.14541	16.45	16.358	16.503	0					8	5	2	0	0	0	0.5879	1	3751	3751		23.042	1.0826	1	75179			25327	11056	16796	16858	25671	25671					0.037609007547075635
LRDWAEVI	8	Unmodified	_LRDWAEVI_					0	0	0			REV__TUBAL3|p.A396D|1|0.48|ENSG00000178462|chr10:5393671-5393671|G/T|missense_variant	REV__TUBAL3|p.A396D|1|0.48|ENSG00000178462|chr10:5393671-5393671|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.27398681640625	2	501.274367	1000.53418	-0.044789	-2.2452E-05	0.14074	7.0549E-05	0.095949	4.8097E-05	501.2743882112831	32.751	0.19494	32.751	32.638	32.833	0					18	7	3	0	0	0	0.67394	1	10587	10587		37.159	0.13063	1	306180	+		25328	22248	16797	16859	25672	25672					0.033934737887989286
LREAPTKI	8	Unmodified	_LREAPTKI_					0	0	0			REV__ENSG00000254206|ENST00000698511|NPIPB11	REV__ENSG00000254206|ENST00000698511|NPIPB11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.28424072265625	2	464.284734	926.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.733	1	40.733	40.233	41.233	0								0	0	0	1.7419	1	16053	16053		32.812	0	1		+		25329	17742	16798	16860	25673	25673					0.08870064168456793
LRETAGSAKP	10	Unmodified	_LRETAGSAKP_					0	0	0			REV__ENST00000477680.5_1_7:4815294-4829561:+|nuORF	REV__ENST00000477680.5_1_7:4815294-4829561:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2882080078125	2	515.288005	1028.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.631	1	28.631	28.131	29.131	0								0	0	0	0.35072	1	10139	10139		42.864	0	1		+		25330	12177	16799	16861	25674	25674					0.04831957329179204
LRFGKRSIN	9	Unmodified	_LRFGKRSIN_					0	0	0			REV__LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant	REV__LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.2219543457031	3	364.220847	1089.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.357	1	41.357	40.857	41.857	0								0	0	0	0.37821	1	13750	13750		12.812	0	1		+		25331	15360	16800	16862	25675	25675					0.09947649074001674
LRFHLTVL	8	Unmodified	_LRFHLTVL_					0	0	0			REV__ENST00000466883.5_1_7:65439694-65439883:-|nuORF	REV__ENST00000466883.5_1_7:65439694-65439883:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.54290771484375	3	333.543038	997.607286	0.25644	8.5532E-05	-0.50154	-0.00016729	-0.24511	-8.1754E-05	333.5429964310978	30.892	0.41222	30.892	30.738	31.15	0					26	16	2	0	0	0	0.72381	1	9872	9872		30.504	2.6214	1	76937	+		25332	19423	16801	16863	25676	25676					0.10838647302068694
LRFHNRRQ	8	Unmodified	_LRFHNRRQ_					0	0	0			REV__ENST00000334529.9_1_3:112184412-112184451:-|nuORF	REV__ENST00000334529.9_1_3:112184412-112184451:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.8184204101562	2	563.820673	1125.62679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.001	1	17.001	16.501	17.501	0								0	0	0	1.7419	1	4175	4175		20.482	2.2197	1		+		25333	18403	16802	16864	25677	25677					0.06900416365533601
LRFIQAVRHD	10	Unmodified	_LRFIQAVRHD_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.8556518554688	2	627.856921	1253.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.74	1	41.74	41.24	42.24	0								0	0	0	0.4201	1	16413	16413		19.997	1.7347	1		+		25334	17506	16803	16865	25678	25678					0.08258705648449904
LRFQTVQPI	9	Unmodified	_LRFQTVQPI_					0	0	0		CRB1|p.M520I|1|0.18|ENSG00000134376|chr1:197421388-197421388|G/A|missense_variant	CRB1|p.M520I|1|0.18|ENSG00000134376|chr1:197421388-197421388|G/A|missense_variant	CRB1|p.M520I|1|0.18|ENSG00000134376|chr1:197421388-197421388|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.3242797851562	2	551.324391	1100.63423	1.1498	0.00063392	-3.7775	-0.0020826	-2.6277	-0.0014487	551.3229951474013	22.192	0.23387	22.192	22.111	22.345	0					7	5	2	0	0	0	0.50858	1	6589	6589		24.203	0	1	48330			25335	686	16804	16866	25679	25679					0.08793711122598324
LRFRAFQQST	10	Unmodified	_LRFRAFQQST_					0	0	0		nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-2|TCTN3;ENSG00000119977|ENST00000371217|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	627.341064453125	2	627.341104	1252.66765	0.79572	0.00049919	-2.4335	-0.0015266	-1.6378	-0.0010275	627.3406386289604	24.934	0.13616	24.934	24.859	24.995	0					5	4	2	0	0	0	0.6796	1	7697	7697		24.519	0.31644	1	44959			25336	3153	16805	16867	25680	25680					0.051427128944851574
LRGAQGHAHS	10	Unmodified	_LRGAQGHAHS_					0	0	0			REV__ENST00000526028.1_1_11:125757866-125758112:+|nuORF	REV__ENST00000526028.1_1_11:125757866-125758112:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2666015625	2	517.267939	1032.52132	-1.4678	-0.00075923	-3.193	-0.0016516	-4.6608	-0.0024109	517.2666051863515	32.026	0.16516	32.026	31.911	32.076	0					5	4	2	0	0	0	0.56931	1	11106	11106		37.812	0.65241	1	60156	+		25337	19991	16806	16868	25681	25681					0.0063645544926203
LRGDKGRK	8	Unmodified	_LRGDKGRK_					0	0	0		ENST00000514415.1_1_12:54380126-54383028:+|nuORF	ENST00000514415.1_1_12:54380126-54383028:+|nuORF	ENST00000514415.1_1_12:54380126-54383028:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2866516113281	2	465.2856	928.556647	2.6164	0.0012174	-0.45279	-0.00021068	2.1636	0.0010067	465.28549201796153	39.342	0.1909	39.342	39.23	39.421	0					10	4	3	0	0	0	0.63077	1	15546	15546		44.117	44.117	1	195280			25338	10254	16807	16869	25682	25682					0.08951117977085232
LRGPAAPGPVI	11	Unmodified	_LRGPAAPGPVI_					0	0	0		PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.8816833496094	3	349.881831	1046.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.386	1	28.386	27.886	28.886	0								0	0	0	0.44488	1	10394	10394		27.047	3.5246	1				25339	11991	16808	16870	25683	25683					0.10221728468172842
LRGSLETEL	9	Unmodified	_LRGSLETEL_					0	0	0			REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2824401855469	2	509.282389	1016.55022	-0.044705	-2.2768E-05	0.011932	6.0766E-06	-0.032773	-1.6691E-05	509.28237915018804	24.388	0.3171	24.388	24.278	24.595	0					12	6	3	0	0	0	0.035062	1	8393	8393		104.06	4.6818	1	1150600	+		25340	15711	16809	16871	25684	25684					0.04261135235049096
LRGVDDSY	8	Unmodified	_LRGVDDSY_					0	0	0		CHSY1|p.G651Vfs*14|1|0.08|ENSG00000131873|chr15:101177845-101177846|-/A|frameshift_variant;ENSG00000131873|ENST00000254190|CHSY1;CHSY1|p.P223Lfs*3|1|0.31|ENSG00000131873|chr15:101235232-101235232|C/-|frameshift_variant	CHSY1|p.G651Vfs*14|1|0.08|ENSG00000131873|chr15:101177845-101177846|-/A|frameshift_variant	CHSY1|p.G651Vfs*14|1|0.08|ENSG00000131873|chr15:101177845-101177846|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.22918701171875	2	462.724707	923.43486	-0.47244	-0.00021861	2.0915	0.00096777	1.619	0.00074916	462.7246659102745	28.333	0.71361	28.333	28.211	28.925	0					40	14	5	0	0	0	0.67394	1	10302	10302		37.159	1.9584	1	4138100			25341	542	16810	16872	25685	25685					-0.029919688959580526
LRGVFLTLGAM	11	Unmodified	_LRGVFLTLGAM_					0	0	0			REV__RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	REV__RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.3433227539062	2	589.341726	1176.6689	3.1846	0.0018768	-0.43693	-0.0002575	2.7477	0.0016193	589.3413366595361	52.832	0.97419	52.832	52.663	53.637	0					130	58	3	0	0	0	0.78498	1	20502	20502		18.262	1.7889	1	228940	+		25342	13822	16811	16873	25686	25686					0.08763210939059718
LRGWGGPGAP	10	Unmodified	_LRGWGGPGAP_					0	0	0			REV__ENST00000505456.6_1_17:48624586-48625477:+|nuORF	REV__ENST00000505456.6_1_17:48624586-48625477:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.25823974609375	2	484.259051	966.503549	-0.095382	-4.619E-05	-0.26897	-0.00013025	-0.36435	-0.00017644	484.25884089821574	35.654	0.19621	35.654	35.579	35.775	0					10	5	2	0	0	0	0.58896	1	13872	13872		35.618	0	1	185870	+		25343	19834	16812	16874	25687	25687					0.018957401944248886
LRHPLTRA	8	Unmodified	_LRHPLTRA_					0	0	0			REV__ENST00000480290.5_1_7:127991288-127999229:-|nuORF	REV__ENST00000480290.5_1_7:127991288-127999229:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2967224121094	2	482.295968	962.577383	0.89634	0.0004323	0.84576	0.00040791	1.7421	0.00084021	482.29641867411175	39.205	0.4679	39.205	39.015	39.483	0					14	10	3	0	0	0	0.72381	1	15470	15470		30.504	30.504	1	214210	+		25344	19586	16813	16875	25688	25688					0.09459708356746432
LRHQKTQTVPD	11	Unmodified	_LRHQKTQTVPD_					0	0	0		RGS3|p.D307Gfs*40|1|0.45|ENSG00000138835|chr9:113505454-113505455|-/G|frameshift_variant;RGS3|p.D677Gfs*6|1|0.38|ENSG00000138835|chr9:113536903-113536904|-/C|frameshift_variant;nc|ENSG00000138835|P49796-5|RGS3;RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant;RGS3|p.E892Rfs*27|1|0.39|ENSG00000138835|chr9:113584082-113584082|G/-|frameshift_variant;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3	RGS3|p.D307Gfs*40|1|0.45|ENSG00000138835|chr9:113505454-113505455|-/G|frameshift_variant	RGS3|p.D307Gfs*40|1|0.45|ENSG00000138835|chr9:113505454-113505455|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	661.8636474609375	2	661.8624	1321.71025	-0.33215	-0.00021984	1.8538	0.0012269	1.5216	0.0010071	662.3649622631733	41.213	0.13503	41.213	41.115	41.25	0					11	6	2	0	0	0	0.70609	1	15656	15656		27.047	1.4733	1	54951			25345	4298	16814	16876	25689	25689					0.06226063232065826
LRIVNNTV	8	Unmodified	_LRIVNNTV_					0	0	0			REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.78192138671875	2	464.782359	927.550165	-0.47923	-0.00022274	-0.10704	-4.975E-05	-0.58627	-0.00027249	464.7822725992093	20.133	0.13856	20.133	20.051	20.189	0					7	3	3	0	0	0	0.63077	1	5612	5612		44.117	1.7207	1	280580	+		25346	13468	16815	16877	25690	25690					0.08349180025697933
LRKEEKEME	9	Unmodified	_LRKEEKEME_					0	0	0			REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.3056030273438	2	596.305538	1190.59652	1.7644	0.0010521	-0.8137	-0.00048522	0.95066	0.00056688	596.3052167944717	23.679	0.56272	23.679	23.568	24.13	0					32	11	4	0	0	0	0.27123	1	8118	8118		37.812	0	1	807540	+		25347	13148	16816	16878	25691	25691					0.00884832074825681
LRKLATTPT	9	Unmodified	_LRKLATTPT_					0	0	0		ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENST00000491404.1_1_6:74228710-74228824:-|nuORF	ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENST00000434005.1_1_7:22551057-22551540:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.8122863769531	2	500.811116	999.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.736	1	11.736	11.236	12.236	0								0	0	0	0.38404	1	2323	2323		15.642	4.1308	1				25348	9513	16817	16879	25692	25692					0.10786022231263814
LRKLHELVE	9	Unmodified	_LRKLHELVE_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.5643005371094	3	379.564391	1135.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.437	1	22.437	21.937	22.937	0								0	0	0	0.31838	1	6683	6683		31.53	1.2121	1		+		25349	13266	16818	16880	25693	25693					0.10893382668359664
LRKLRQGQV	9	Unmodified	_LRKLRQGQV_					0	0	0			REV__ENST00000528986.1_1_11:121962353-121971085:-|nuORF	REV__ENST00000528986.1_1_11:121962353-121971085:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.3491821289062	2	549.348732	1096.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.45	1	13.45	12.95	13.95	0								0	0	0	0.40728	1	3065	3065		7.1934	0	1		+		25350	20025	16819	16881	25694	25694					0.13843624482365158
LRKNISQF	8	Unmodified	_LRKNISQF_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2948913574219	2	503.295633	1004.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.523	1	46.523	46.023	47.023	0								0	0	0	1.7419	1	14857	14857		53.351	0	1		+		25351	16937	16820	16882	25695	25695					0.07460868917030439
LRKNQSSEDI	10	Unmodified	_LRKNQSSEDI_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.2109375	3	397.210565	1188.60986	0.38456	0.00015275	0.81346	0.00032311	1.198	0.00047587	397.2108153185711	41.009	0.44944	41.009	40.748	41.198	0					12	8	2	0	0	0	0.69166	1	16282	16282		16.007	0	1	102840			25352	4562	16821	16883	25696	25696					0.02310406178435187
LRKPNPEAQRR	11	Unmodified	_LRKPNPEAQRR_					0	0	0			REV__ENSG00000169122|ENST00000519262|FAM110B	REV__ENSG00000169122|ENST00000519262|FAM110B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	682.896484375	2	682.897109	1363.77966	0.24375	0.00016645	-0.93893	-0.0006412	-0.69519	-0.00047474	682.8965067925432	41.232	1.2188	41.232	40.448	41.667	0					117	69	2	0	0	0	0.74306	1	13245	13245		23.523	23.523	1	112170	+		25353	16294	16822	16884	25697	25697					0.1123256697146644
LRKSGKMAP	9	Unmodified	_LRKSGKMAP_					0	0	0		ENST00000264501.8_2_4:123274283-123275004:+|nuORF	ENST00000264501.8_2_4:123274283-123275004:+|nuORF	ENST00000264501.8_2_4:123274283-123275004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2897644042969	2	494.292037	986.56952	-2.5094	-0.0012404	-1.5457	-0.00076404	-4.0551	-0.0020044	494.2908917427464	46.336	0.13861	46.336	46.255	46.394	0					12	8	2	0	0	0	0.59802	1	15661	15661		21.96	0	1	59239			25354	8329	16823	16885	25698	25698					0.07569813044960938
LRKSTRNT	8	Unmodified	_LRKSTRNT_					0	0	0		MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.28985595703125	2	488.28834	974.562127	3.5085	0.0017132	-0.24524	-0.00011975	3.2633	0.0015934	488.2882465722802	30.988	0.17599	30.988	30.901	31.077	0					13	6	3	0	0	0	0.67394	1	10225	10225		37.159	37.159	1	107050			25355	3602	16824	16886	25699	25699					0.07382796768877142
LRKWLCFT	8	Unmodified	_LRKWLCFT_					0	0	0			REV__ENSG00000196912|ENST00000359901|ANKRD36B	REV__ENSG00000196912|ENST00000359901|ANKRD36B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7985229492188	2	533.796955	1065.57936	3.388	0.0018085	-0.32266	-0.00017224	3.0654	0.0016363	533.7967876762932	28.237	0.76838	28.237	28.075	28.843	0					34	15	3	0	0	0	0.32408	1	10214	10214		79.939	0.48821	1	3806100	+		25356	17291	16825	16887	25700	25700					0.04919001050325278
LRLCPMHQ	8	Unmodified	_LRLCPMHQ_					0	0	0			REV__ENST00000402563.5_2_18:13666684-13671889:-|nuORF	REV__ENST00000402563.5_2_18:13666684-13671889:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2573547363281	2	499.257139	996.499726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.028	1	13.028	12.528	13.528	0								0	0	0	1.7419	1	2528	2528		18.324	0.062328	1		+		25357	18955	16826	16888	25701	25701					0.0013361110469531923
LRLFFPCTVAS	11	Unmodified	_LRLFFPCTVAS_					0	0	0			REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.340576171875	2	627.339184	1252.66381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.666	1	18.666	18.166	19.166	0								0	0	0	0.44646	1	5769	5769		26.693	1.1189	1		+		25358	19786	16827	16889	25702	25702					0.04758907076438845
LRLRGGVAR	9	Unmodified	_LRLRGGVAR_					0	0	0			REV__nc|ENSG00000103253|Q6PII5-3|HAGHL	REV__nc|ENSG00000103253|Q6PII5-3|HAGHL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.2162780761719	3	333.217437	996.630481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.916	1	26.916	26.416	27.416	0								0	0	0	0.29356	1	8236	8236		36.447	0.82846	1		+		25359	20959	16828	16890	25703	25703					0.13203086139424158
LRLYDVTF	8	Unmodified	_LRLYDVTF_					0	0	0		CNTN1|p.K576Nfs*24|1|0.13|ENSG00000018236|chr12:40959156-40959156|A/-|frameshift_variant;nc|ENSG00000018236|Q12860-3|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;ENSG00000018236|ENST00000551295|CNTN1	CNTN1|p.K576Nfs*24|1|0.13|ENSG00000018236|chr12:40959156-40959156|A/-|frameshift_variant	CNTN1|p.K576Nfs*24|1|0.13|ENSG00000018236|chr12:40959156-40959156|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.78515625	2	513.784567	1025.55458	1.3228	0.00067963	-0.28682	-0.00014736	1.036	0.00053227	513.7845207757109	47.258	0.12331	47.258	47.196	47.32	0					14	7	2	0	0	0	0.68432	1	18067	18067		35.618	1.4457	1	58165			25360	576	16829	16891	25704	25704					0.04282644448608153
LRMFYHCI	8	Unmodified	_LRMFYHCI_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-4|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-4|SIRT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2640380859375	2	541.76734	1081.52013	1.0914	0.00059128	-1.3246	-0.00071765	-0.23326	-0.00012637	541.7691230433497	34.135	0.21579	34.135	34.049	34.265	0					21	9	3	0	0	0	0.72892	1	11130	11130		29.842	0.69198	1	117880	+		25361	13155	16830	16892	25705	25705					-0.017372182355074983
LRMSDLQIL	9	Unmodified	_LRMSDLQIL_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.5414123535156	3	363.542598	1087.60597	0.48582	0.00017662	-3.6303	-0.0013198	-3.1445	-0.0011432	363.54124649248354	32.652	0.1346	32.652	32.582	32.717	0					9	3	3	0	0	0	0.41958	1	12428	12428		40.058	3.7405	1	96189	+		25362	12081	16831	16893	25706	25706					0.06566645151019657
LRMVCQKL	8	Carbamidomethyl (C),Oxidation (M)	_LRM(Oxidation (M))VC(Carbamidomethyl (C))QKL_	LRMVC(1)QKL	LRM(1)VCQKL	LRMVC(83)QKL	LRM(83)VCQKL	0	1	1		ENST00000520849.5_1_8:89341227-89341371:+|nuORF	ENST00000520849.5_1_8:89341227-89341371:+|nuORF	ENST00000520849.5_1_8:89341227-89341371:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2930297851562	2	532.291179	1062.56781	3.4096	0.0018149	0.014355	7.6408E-06	3.4239	0.0018225	532.291274878524	28.135	0.41694	28.135	27.926	28.343	0					15	8	3	0	0	0	0.29779	1	10146	10146		83.287	83.287	1	1866700			25363	10306	16832	16894	25707	25707	415	410			0.03902435964710094
LRNATDKLAQ	10	Unmodified	_LRNATDKLAQ_					0	0	0			REV__ENSG00000163931|ENST00000462138|TKT	REV__ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3204956054688	2	565.319837	1128.62512	0.13665	7.7251E-05	1.778	0.0010051	1.9147	0.0010824	565.3208141217636	13.689	0.11524	13.689	13.639	13.755	0					12	6	3	0	0	0	0.31613	1	2848	2848		65.465	3.7741	1	115130	+		25364	15936	16833	16895	25708	25708					0.06595317766254993
LRNGHPAQ	8	Unmodified	_LRNGHPAQ_					0	0	0		ENST00000286648.9_1_4:71859482-71859599:+|nuORF	ENST00000286648.9_1_4:71859482-71859599:+|nuORF	ENST00000286648.9_1_4:71859482-71859599:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.74017333984375	2	446.741025	891.467498	-0.4364	-0.00019496	-1.3745	-0.00061403	-1.8109	-0.00080899	446.74037064742055	16.9	0.20852	16.9	16.796	17.005	0					7	4	2	0	0	0	0.68754	1	4785	4785		35.201	0.04869	1	339390			25365	8427	16834	16896	25709	25709					0.017422830175519266
LRNNAESI	8	Unmodified	_LRNNAESI_					0	0	0			REV__tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	REV__tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7478942871094	2	458.745973	915.477394	0.72219	0.0003313	3.3348	0.0015298	4.057	0.0018611	458.74709612408867	32.089	0.34043	32.089	31.99	32.331	0					12	7	3	0	0	0	0.59411	1	12174	12174		50.025	2.1089	1	376180	+		25366	22223	16835	16897	25710	25710					0.016274262322895083
LRNVAFDI	8	Unmodified	_LRNVAFDI_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.267822265625	2	474.269084	946.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.954	1	18.954	18.454	19.454	0								0	0	0	1.7419	1	4812	4812		35.201	4.6971	1		+		25367	13299	16836	16898	25711	25711					0.04821491134362077
LRNVSTGD	8	Unmodified	_LRNVSTGD_					0	0	0		ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000186395|ENST00000269576|KRT10	ENSG00000186395|ENST00000269576|KRT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.22479248046875	2	431.224874	860.435195	-0.25086	-0.00010818	0.0038912	1.678E-06	-0.24696	-0.0001065	431.2249306698763	17.839	0.41332	17.839	17.72	18.133	0					16	11	3	0	0	0	0.27635	1	4321	4321		90.37	23.941	1	378070		+	25368	639	16837	16899	25712	25712					-0.0006054917608935284
LRNVSTGD	8	Unmodified	_LRNVSTGD_					0	0	0		ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000186395|ENST00000269576|KRT10	ENSG00000186395|ENST00000269576|KRT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.224609375	2	431.224874	860.435195	-0.83281	-0.00035913	0.29705	0.00012809	-0.53576	-0.00023103	431.22494014594184	17.839	0.55235	17.839	17.657	18.209	0					20	16	3	0	0	0	0.3049	1	4556	4556		82.241	15.811	1	451650		+	25369	639	16837	16899	25713	25713					-0.0006054917608935284
LRPPPAWSPP	10	Unmodified	_LRPPPAWSPP_					0	0	0			REV__ULK1|p.T575Rfs*72|1|0.43|ENSG00000177169|chr12:131915998-131915998|C/-|frameshift_variant	REV__ULK1|p.T575Rfs*72|1|0.43|ENSG00000177169|chr12:131915998-131915998|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2105712890625	3	373.209948	1116.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.021	1	44.021	43.521	44.521	0								0	0	0	0.40446	1	17180	17180		20.837	0	1		+		25370	22259	16838	16900	25714	25714					0.05437441951130495
LRPSVALNK	9	Unmodified	_LRPSVALNK_					0	0	0			REV__ENST00000529953.5_1_11:66282092-66287879:+|nuORF	REV__ENST00000529953.5_1_11:66282092-66287879:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.310791015625	2	499.311284	996.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.848	1	23.848	23.348	24.348	0								0	0	0	0.27521	1	7345	7345		25.574	0	1		+		25371	20036	16839	16901	25715	25715					0.10957441951120472
LRPWKKHS	8	Unmodified	_LRPWKKHS_					0	0	0		ENSG00000182636|ENST00000649030|NDN;NDN|p.G229W|1|0.22|ENSG00000182636|chr15:23686533-23686533|C/A|missense_variant	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.3117065429688	2	526.311618	1050.60868	-1.222	-0.00064317	1.1082	0.00058326	-0.11384	-5.9913E-05	526.31219289978	29.224	0.53267	29.224	29.042	29.575	0					32	14	3	0	0	0	0.49216	1	9780	9780		60.972	16.441	1	277900			25372	6911	16840	16902	25716	25716					0.08540281390855853
LRQEAEQL	8	Unmodified	_LRQEAEQL_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4;ENST00000607589.1_1_1:1756799-1756892:-|nuORF;ENST00000480159.1_1_7:100273867-100274642:+|nuORF;nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3	ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000111664|P16520-2|GNB3;REV__nc|ENSG00000103051|Q9H9E3-3|COG4	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.76708984375	2	493.766906	985.519259	-1.2695	-0.00062681	0.29267	0.00014451	-0.97678	-0.0004823	493.7670114183111	26.566	0.14819	26.566	26.519	26.667	0					7	5	2	0	0	0	0.25873	1	8367	8367		96.19	0.37527	1	141100			25373	1600;2681;13661	16841	16903	25717	25717					0.025919819208070294
LRQTCAVPL	9	Unmodified	_LRQTCAVPL_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.1914367675781	3	334.191788	999.553536	0.25329	8.4649E-05	-1.4319	-0.00047854	-1.1786	-0.00039389	334.19136619444953	23.893	0.11114	23.893	23.842	23.954	0					7	4	2	0	0	0	0.48389	1	6979	6979		34.173	7.3764	1	62745	+		25374	13050	16842	16904	25718	25718					0.05374106808051238
LRQTKQEK	8	Unmodified	_LRQTKQEK_					0	0	0			REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2952880859375	2	515.803823	1029.59309	1.5106	0.00077918	-1.2598	-0.00064979	0.25085	0.00012939	515.8031975918026	12.14	0.099449	12.14	12.049	12.148	0					4	2	2	0	0	0	0.78978	1	2486	2486		21.96	1.9631	1	160790	+		25375	15190	16843	16905	25719	25719					0.07947950083121214
LRQVGSVPSL	10	Unmodified	_LRQVGSVPSL_					0	0	0		ENST00000480194.5_1_6:10748006-10756748:+|nuORF	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3163452148438	2	528.314023	1054.61349	3.4659	0.0018311	0.73727	0.00038951	4.2032	0.0022206	528.3144023481335	29.085	1.0061	29.085	28.775	29.781	0					67	20	5	0	0	0	0.43008	1	10575	10575		52.937	52.937	1	26256000			25376	9949	16844	16906	25720	25720					0.08837120742964544
LRRAAHGA	8	Unmodified	_LRRAAHGA_					0	0	0		ENST00000458426.5_2_2:208489082-208489976:-|nuORF	ENST00000458426.5_2_2:208489082-208489976:-|nuORF	ENST00000458426.5_2_2:208489082-208489976:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.2524108886719	2	426.25156	850.488568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.306	1	14.306	13.806	14.806	0								0	0	0	1.7419	1	3078	3078		29.842	8.1392	1				25377	9710	16845	16907	25721	25721					0.0573429311707514
LRRALLHEL	9	Unmodified	_LRRALLHEL_					0	0	0			REV__nc|ENSG00000104044|Q04671-2|OCA2	REV__nc|ENSG00000104044|Q04671-2|OCA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.2374572753906	3	374.236497	1119.68766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.546	1	36.546	36.046	37.046	0								0	0	0	0.3428	1	13083	13083		26.693	1.1189	1		+		25378	13704	16846	16908	25722	25722					0.13260508625103284
LRRAPRGSP	9	Unmodified	_LRRAPRGSP_					0	0	0		nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.3053283691406	2	505.304324	1008.5941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.714	1	33.714	33.214	34.214	0								0	0	0	0.35507	1	11331	11331		24.203	0	1				25379	11521	16847	16909	25723	25723					0.0901420924269587
LRRCSTLATP	10	Unmodified	_LRRCSTLATP_					0	0	0		ENST00000300434.3_1_9:130707799-130712818:-|nuORF	ENST00000300434.3_1_9:130707799-130712818:-|nuORF	ENST00000300434.3_1_9:130707799-130712818:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.21044921875	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.361	1	55.361	54.861	55.861	0								0	0	0	0.4201	1	19933	19933		21.686	8.2317	1				25380	8484	16848	16910	25724	25724					0.05372279239782074
LRREPKTG	8	Unmodified	_LRREPKTG_					0	0	0			REV__MORC2|p.S239L|1|0.21|ENSG00000133422|chr22:30941541-30941541|G/A|missense_variant	REV__MORC2|p.S239L|1|0.21|ENSG00000133422|chr22:30941541-30941541|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7861022949219	2	478.785433	955.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.673	1	52.673	52.173	53.173	0								0	0	0	1.7419	1	20417	20417		29.15	0.89528	1		+		25381	20889	16849	16911	25725	25725					0.0767569825721921
LRRGSSQLSLQ	11	Unmodified	_LRRGSSQLSLQ_					0	0	0		ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.5751647949219	3	415.573837	1243.69968	2.7932	0.0011608	0.3688	0.00015327	3.162	0.001314	415.5739776031246	24.355	0.89853	24.355	24.246	25.144	0					39	18	4	0	0	0	0.10641	1	8402	8402		88.134	6.6087	1	2283100			25382	9213	16850	16912	25726	25726					0.08758080577672445
LRRLQAEV	8	Unmodified	_LRRLQAEV_					0	0	0			REV__nc|ENSG00000101197|Q96CA5-2|BIRC7	REV__nc|ENSG00000101197|Q96CA5-2|BIRC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.8009948730469	2	492.801083	983.587613	-0.072009	-3.5486E-05	0.02833	1.3961E-05	-0.043678	-2.1525E-05	492.8011394084666	21.861	0.1208	21.861	21.794	21.915	0					5	3	2	0	0	0	0.68432	1	6102	6102		35.618	5.1146	1	209010	+		25383	13593	16851	16913	25727	25727					0.09516271291317935
LRRSPYAP	8	Unmodified	_LRRSPYAP_					0	0	0			REV__ARL11|p.Q67Rfs*41|1|0.24|ENSG00000152213|chr13:49630640-49630640|G/-|frameshift_variant	REV__ARL11|p.Q67Rfs*41|1|0.24|ENSG00000152213|chr13:49630640-49630640|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2737121582031	2	480.274701	958.534849	-2.9254	-0.001405	0.95282	0.00045762	-1.9726	-0.00094737	480.2751276922344	33.77	0.50668	33.77	33.521	34.027	0					29	14	3	0	0	0	0.66238	1	11981	11981		39.021	0.21535	1	1735800	+		25384	12225	16852	16914	25728	25728					0.053923132285035535
LRRWTKTNL	9	Unmodified	_LRRWTKTNL_					0	0	0			REV__ENST00000361488.7_1_8:58955845-59058627:+|nuORF	REV__ENST00000361488.7_1_8:58955845-59058627:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.3534545898438	2	594.354014	1186.69348	0.024957	1.4833E-05	-1.0234	-0.00060827	-0.99846	-0.00059344	594.353259557848	36.903	0.10949	36.903	36.82	36.93	0					5	3	2	0	0	0	0.40353	1	14404	14404		26.693	0	1	88369	+		25385	18568	16853	16915	25729	25729					0.107596071368107
LRSALRSQ	8	Unmodified	_LRSALRSQ_					0	0	0		KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.P174Qfs*20|1|0.38|ENSG00000272333|chr19:35719862-35719862|C/-|frameshift_variant;KMT2B|p.K553Qfs*46|1|0.45|ENSG00000272333|chr19:35720996-35720997|-/C|frameshift_variant;KMT2B|p.G934Efs*52|1|0.1|ENSG00000272333|chr19:35723069-35723069|G/-|frameshift_variant;KMT2B|p.A1049Gfs*39|1|0.32|ENSG00000272333|chr19:35723812-35723813|-/G|frameshift_variant;KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7781677246094	2	465.777608	929.540663	0.67197	0.00031299	1.8827	0.00087692	2.5547	0.0011899	465.7779814653225	42.534	0.19123	42.534	42.443	42.634	0					9	5	2	0	0	0	0.54629	1	16999	16999		55.504	9.5523	1	68241			25386	8088	16854	16916	25730	25730					0.07307411740180214
LRSCPMCQK	9	Carbamidomethyl (C)	_LRSC(Carbamidomethyl (C))PMCQK_	LRSC(1)PMCQK		LRSC(57)PMC(-57)QK		0	1	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7681884765625	2	561.764471	1121.51439	3.4706	0.0019496	2.2485	0.0012631	5.7191	0.0032128	561.766156582119	24.004	0.8648	24.004	23.796	24.661	0					63	17	6	0	0	0	0.047412	1	8205	8205		96.19	13.95	2	11044000			25387	5472	16855	16917	25731	25731	225				-0.04150684809496852
LRSQEDLK	8	Unmodified	_LRSQEDLK_					0	0	0		ENSG00000109061|ENST00000226207|MYH1;ENSG00000125414|ENST00000245503|MYH2	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7769775390625	2	494.774731	987.534909	2.8186	0.0013946	0.93027	0.00046027	3.7489	0.0018549	494.77506820178104	46.441	0.22356	46.441	46.346	46.569	0					21	10	3	0	0	0	0.68432	1	18561	18561		35.618	0	1	259940			25388	2562	16856	16918	25732	25732					0.040642684378553895
LRSSLAQL	8	Unmodified	_LRSSLAQL_					0	0	0			REV__CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	REV__CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.26885986328125	2	444.269084	886.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.274	1	19.274	18.774	19.774	0								0	0	0	1.7419	1	5201	5201		58.782	0	1		+		25389	12526	16857	16919	25733	25733					0.0758149113436275
LRSVHDWHIDM	11	Unmodified	_LRSVHDWHIDM_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	704.8448486328125	2	704.843153	1407.67175	2.2039	0.0015534	-0.20297	-0.00014306	2.0009	0.0014103	704.8430296765767	23.906	0.66282	23.906	23.65	24.312	0					43	13	5	0	0	0	0.47622	1	8113	8113		45.972	0	1	11621000	+		25390	14390	16858	16920	25734	25734					-0.01577565674097059
LRTAADVI	8	Unmodified	_LRTAADVI_					0	0	0		LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant;ENSG00000275183|ENST00000611161|LENG9;nc|ENSG00000275183|Q96B70|LENG9	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.75579833984375	2	429.75581	857.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.565	1	35.565	35.065	36.065	0								0	0	0	1.7419	1	11655	11655		31.955	1.4512	1				25391	8106	16859	16921	25735	25735					0.06261802243022885
LRVGGGGV	8	Unmodified	_LRVGGGGV_					0	0	0		ENST00000536878.6_2_19:58095623-58095668:+|nuORF	ENST00000536878.6_2_19:58095623-58095668:+|nuORF	ENST00000536878.6_2_19:58095623-58095668:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.7162780761719	2	357.716488	713.418422	0.72067	0.00025779	-0.81571	-0.00029179	-0.095043	-3.3998E-05	357.716045992309	21.742	0.13944	21.742	21.653	21.792	0					5	3	2	0	0	0	0.72892	1	6971	6971		29.842	6.8048	1	164870			25392	10495	16860	16922	25736	25736					0.05024994728614729
LRVGRGPD	8	Unmodified	_LRVGRGPD_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.25103759765625	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.728	1	46.728	46.228	47.228	0								0	0	0	1.7419	1	15741	15741		19.36	1.995	1				25393	9386	16861	16923	25737	25737					0.048394536773685104
LRVIDEEGLA	10	Unmodified	_LRVIDEEGLA_					0	0	0			REV__ENST00000539808.2_15:82768988-82769599:-|nuORF	REV__ENST00000539808.2_15:82768988-82769599:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.8094482421875	2	557.808771	1113.60299	-0.88758	-0.0004951	1.5452	0.0008619	0.65757	0.0003668	557.809822028448	30.464	0.21336	30.464	30.369	30.583	0					6	5	2	0	0	0	0.46215	1	10386	10386		49.442	8.6634	1	86096	+		25394	20127	16862	16924	25738	25738					0.05073093297869491
LRVMLAETI	9	Unmodified	_LRVMLAETI_					0	0	0			REV__ENST00000249601.8_1_10:49813064-49813103:-|nuORF	REV__ENST00000249601.8_1_10:49813064-49813103:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3057861328125	2	523.307352	1044.60015	-1.2875	-0.00067376	-0.63306	-0.00033129	-1.9206	-0.001005	523.307021562465	39.323	0.39025	39.323	39.156	39.546	0					33	21	2	0	0	0	0.53083	1	14022	14022		29.15	0	1	109940	+		25395	17960	16863	16925	25739	25739					0.07963546639325614
LRVSELAGSL	10	Unmodified	_LRVSELAGSL_					0	0	0			REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8057861328125	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.501	1	23.501	23.001	24.001	0								0	0	0	0.4044	1	8106	8106		29.17	1.2878	1		+		25396	15685	16864	16926	25740	25740					0.07745414506052839
LRWCGGLIPK	10	Unmodified	_LRWCGGLIPK_					0	0	0			REV__ENST00000354249.8_2_16:2030177-2031410:-|nuORF	REV__ENST00000354249.8_2_16:2030177-2031410:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.5563049316406	3	381.55495	1141.64302	0.52973	0.00020212	0.94158	0.00035926	1.4713	0.00056138	381.5552456269518	27.003	0.16297	27.003	26.943	27.106	0					8	5	2	0	0	0	0.65051	1	8272	8272		28.081	1.0342	1	81024	+		25397	18497	16865	16927	25741	25741					0.07786361487433169
LRYQNETTI	9	Unmodified	_LRYQNETTI_					0	0	0			REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.3013916015625	2	569.29857	1136.58259	3.4447	0.001961	1.2102	0.00068894	4.6548	0.00265	569.2993066694432	37.049	0.25501	37.049	36.948	37.203	0					15	5	4	0	0	0	0.055856	1	14457	14457		93.195	10.955	1	2080800	+		25398	12817	16866	16928	25742	25742					0.01975922638052907
LRYVCVYIK	9	Unmodified	_LRYVCVYIK_					0	0	0		ENST00000228827.7_1_12:110890303-110890486:-|nuORF	ENST00000228827.7_1_12:110890303-110890486:-|nuORF	ENST00000228827.7_1_12:110890303-110890486:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.8331909179688	2	578.830995	1155.64744	-0.050717	-2.9357E-05	2.4917	0.0014423	2.441	0.0014129	578.8323925079546	40.649	0.040993	40.649	40.623	40.664	0					4	2	2	0	0	0	0.53083	1	13594	13594		29.15	1.2673	1	28339			25399	8193	16867	16929	25743	25743					0.0758382591031932
LSAAAAMVL	9	Unmodified	_LSAAAAMVL_					0	0	0			REV__ENSG00000267221|ENST00000587304|C17orf113	REV__ENSG00000267221|ENST00000587304|C17orf113	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.7407531738281	2	423.741314	845.468075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.445	1	37.445	36.945	37.945	0								0	0	0	0.15865	1	13407	13407		57.811	0	1		+		25400	17796	16868	16930	25744	25744					0.03915941622392438
LSAAAGRRQ	9	Unmodified	_LSAAAGRRQ_					0	0	0		ENST00000248076.3_1_19:17000717-17000960:+|nuORF	ENST00000248076.3_1_19:17000717-17000960:+|nuORF	ENST00000248076.3_1_19:17000717-17000960:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7662048339844	2	465.267407	928.520262	-0.82204	-0.00038247	2.1112	0.00098228	1.2892	0.00059981	465.26882953107764	22.881	0.22109	22.881	22.818	23.039	0					11	7	2	0	0	0	0.26904	1	6844	6844		53.351	3.9099	1	241920			25401	8235	16869	16931	25745	25745					0.05314241080361626
LSAAASAPAEK	11	Unmodified	_LSAAASAPAEK_					0	0	0		ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2770690917969	2	508.274564	1014.53457	2.9745	0.0015119	3.4577	0.0017575	6.4323	0.0032694	508.27641584929904	38.384	0.59123	38.384	38.186	38.778	0					38	12	5	0	0	0	0.53842	1	15188	15188		41.427	0.64845	1	2646000			25402	6765	16870	16932	25746	25746					0.027888487179893673
LSAALLDQP	9	Unmodified	_LSAALLDQP_					0	0	0			REV__ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	REV__ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.260986328125	2	464.260925	926.507297	0.69192	0.00032123	-1.0331	-0.00047962	-0.34117	-0.00015839	464.2604780657426	28.871	0.45711	28.871	28.613	29.07	0					20	9	3	0	0	0	0.098791	1	10619	10619		79.713	5.4575	1	474470	+		25403	14743	16871	16933	25747	25747					0.04110365177609765
LSAALLDQP	9	Unmodified	_LSAALLDQP_					0	0	0			REV__ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	REV__ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2603759765625	2	464.260925	926.507297	-0.42589	-0.00019772	0.24311	0.00011287	-0.18278	-8.4857E-05	464.26101124832104	28.657	0.32958	28.657	28.477	28.806	0					12	8	2	0	0	0	0.22377	1	9530	9530		58.782	4.0056	1	47971	+		25404	14743	16871	16933	25748	25748					0.04110365177609765
LSAAPSTPVI	10	Unmodified	_LSAAPSTPVI_					0	0	0		ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENST00000506603.5_1_5:79058805-79095436:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2758483886719	2	478.276575	954.538597	0.428	0.0002047	-1.921	-0.00091879	-1.493	-0.00071409	478.2755252752476	32.159	0.3341	32.159	32.059	32.393	0					19	8	3	0	0	0	0.47859	1	11804	11804		47.657	3.5405	1	462650			25405	10196	16872	16934	25749	25749					0.0595093821170849
LSAARKLSAP	10	Unmodified	_LSAARKLSAP_					0	0	0			REV__ENST00000423764.5_3_1:3656896-3659715:-|nuORF	REV__ENST00000423764.5_3_1:3656896-3659715:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3106994628906	2	507.308741	1012.60293	-0.37429	-0.00018988	0.20925	0.00010615	-0.16504	-8.3728E-05	507.30889277859825	20.805	0.76145	20.805	20.546	21.307	0					36	15	3	0	0	0	0.5276	1	6955	6955		45.972	0	1	7652500	+		25406	19102	16873	16935	25750	25750					0.09713138088511641
LSAASLTLV	9	Unmodified	_LSAASLTLV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.76531982421875	2	437.765843	873.517133	-0.94195	-0.00041235	0.32122	0.00014062	-0.62072	-0.00027173	437.7657977245207	35.103	0.071617	35.103	35.082	35.154	0					5	3	2	0	0	0	0.32741	1	11870	11870		47.916	1.9636	1	60860			25407	5134;11594	16874	16936	25751	25751					0.07531553182991502
LSAATVYNLL	10	Unmodified	_LSAATVYNLL_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.5376281738281	3	355.53773	1063.59136	1.411	0.00050165	-1.3344	-0.00047444	0.076533	2.721E-05	355.53733327910913	26.463	0.66795	26.463	26.234	26.902	0					27	13	4	0	0	0	0.58896	1	9355	9355		40.058	0	1	812300		+	25408	620	16875	16937	25752	25752					0.062108962745242025
LSADPVMAK	9	Unmodified	_LSADPVMAK_					0	0	0		ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENST00000441188.2_1_X:92477682-92478501:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2491760253906	2	466.249503	930.484453	-0.13485	-6.2875E-05	-0.94311	-0.00043973	-1.078	-0.0005026	466.24921973869687	30.222	0.28369	30.222	30.148	30.432	0					15	6	4	0	0	0	0.098791	1	11274	11274		79.713	2.9384	1	694360			25409	9575	16876	16938	25753	25753					0.016430227884939086
LSADVPPALL	10	Unmodified	_LSADVPPALL_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2922668457031	2	498.292225	994.569897	-1.1008	-0.00054853	1.3493	0.00067233	0.24844	0.0001238	498.29282604815967	39.159	0.24873	39.159	39.086	39.334	0					30	14	3	0	0	0	0.66185	1	13223	13223		26.693	0	1	454970			25410	5979	16877	16939	25754	25754					0.07239511245813901
LSADVVSLK	9	Unmodified	_LSADVVSLK_					0	0	0		NFIL3|p.E443D|1|0.5|ENSG00000165030|chr9:91409406-91409406|C/A|missense_variant	NFIL3|p.E443D|1|0.5|ENSG00000165030|chr9:91409406-91409406|C/A|missense_variant	NFIL3|p.E443D|1|0.5|ENSG00000165030|chr9:91409406-91409406|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.27630615234375	2	466.276575	930.538597	-0.13488	-6.2889E-05	-0.1156	-5.3903E-05	-0.25048	-0.00011679	466.27645642552716	33.847	1.0571	33.847	33.02	34.077	0					58	25	3	0	0	0	0.30951	1	12875	12875		49.442	1.5259	1	510210			25411	11853	16878	16940	25755	25755					0.07054938211729223
LSAEPLARL	9	Unmodified	_LSAEPLARL_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2903747558594	2	485.290017	968.565481	-0.25198	-0.00012228	0.12808	6.2154E-05	-0.1239	-6.0128E-05	485.29019192102453	31.781	0.12284	31.781	31.746	31.869	0					7	4	2	0	0	0	0.4966	1	11016	11016		32.812	1.2826	1	46750	+		25412	14525	16879	16941	25756	25756					0.07994046822898326
LSAESETNGS	10	Unmodified	_LSAESETNGS_					0	0	0			REV__ENST00000483182.5_1_1:38478406-38483425:+|nuORF	REV__ENST00000483182.5_1_1:38478406-38483425:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.71917724609375	2	497.719818	993.425084	-0.7151	-0.00035592	-2.5099	-0.0012492	-3.225	-0.0016052	497.7187332169775	34.547	0.21323	34.547	34.393	34.606	0					6	4	2	0	0	0	0.43008	1	13242	13242		52.937	6.9645	1	70312	+		25413	19620	16880	16942	25757	25757					-0.07189201691983271
LSAFCLAALV	10	Carbamidomethyl (C)	_LSAFC(Carbamidomethyl (C))LAALV_	LSAFC(1)LAALV		LSAFC(66)LAALV		0	1	0			REV__TMEM64|p.A138V|1|0.08|ENSG00000180694|chr8:90645493-90645493|G/A|missense_variant	REV__TMEM64|p.A138V|1|0.08|ENSG00000180694|chr8:90645493-90645493|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7957153320312	2	532.794078	1063.5736	1.7152	0.00091384	-0.25153	-0.00013402	1.4637	0.00077983	532.7940312978056	41.304	0.22163	41.304	41.22	41.441	0					15	10	2	0	0	0	0.31306	1	16242	16242		65.803	7.5733	1	98371	+		25414	16817	16881	16943	25758	25758	596				0.044358577480352324
LSAGLGPGLL	10	Unmodified	_LSAGLGPGLL_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;TTLL4|p.S144Kfs*71|1|0.21|ENSG00000135912|chr2:218738100-218738101|-/A|frameshift_variant	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2737121582031	2	449.273835	896.533118	-1.1806	-0.00053039	0.23474	0.00010546	-0.94581	-0.00042493	449.27397361307493	33.715	0.30396	33.715	33.565	33.869	0					14	11	2	0	0	0	0.52707	1	11321	11321		42.396	3.1433	1	74647			25415	4032	16882	16944	25759	25759					0.08071259419921262
LSAGLGPGLL	10	Unmodified	_LSAGLGPGLL_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;TTLL4|p.S144Kfs*71|1|0.21|ENSG00000135912|chr2:218738100-218738101|-/A|frameshift_variant	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2737121582031	2	449.273835	896.533118	0.65743	0.00029537	-0.58105	-0.00026105	0.076377	3.4314E-05	449.2734212833182	33.888	0.38622	33.888	33.799	34.185	0					26	9	3	0	0	0	0.42631	1	13013	13013		53.351	0.41475	1	240210			25416	4032	16882	16944	25760	25760					0.08071259419921262
LSAGRPNL	8	Unmodified	_LSAGRPNL_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1;ENSG00000182095|ENST00000430969|TNRC18	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.240234375	2	414.240327	826.466101	-0.74594	-0.000309	0.35122	0.00014549	-0.39472	-0.00016351	414.2404662989702	24.861	0.4188	24.861	24.562	24.98	0					27	10	3	0	0	0	0.32408	1	8394	8394		79.939	8.6435	1	764920			25417	8071	16883	16945	25761	25761					0.045926489288035555
LSAGSTPRI	9	Unmodified	_LSAGSTPRI_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2583923339844	2	451.258717	900.50288	-0.49993	-0.0002256	0.24843	0.00011211	-0.2515	-0.00011349	451.2588422679807	29.443	0.42205	29.443	29.351	29.773	0					16	10	3	0	0	0	0.095583	1	10538	10538		80.455	10.827	1	457470			25418	7426	16884	16946	25762	25762					0.0486490075469419
LSAGVDKTT	9	Unmodified	_LSAGVDKTT_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000092377|ENST00000383032|TBL1Y	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.24359130859375	2	446.242732	890.470912	2.5733	0.0011483	-1.22	-0.00054442	1.3532	0.00060388	446.2422134477318	15.289	0.26722	15.289	15.13	15.397	0					11	5	3	0	0	0	0.47038	1	4011	4011		35.618	0	1	310010			25419	6672	16885	16947	25763	25763					0.02129488280888836
LSAHYIPK	8	Unmodified	_LSAHYIPK_					0	0	0		ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.76385498046875	2	464.766178	927.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.629	1	16.629	16.129	17.129	0								0	0	0	1.7419	1	4544	4544		26.796	2.5934	1				25420	6536	16886	16948	25764	25764					0.05114392622704145
LSAIAISRTP	10	Unmodified	_LSAIAISRTP_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.5415344238281	3	343.541475	1027.60259	-1.9532	-0.00067099	2.3492	0.00080705	0.39605	0.00013606	343.5423688853824	26.373	0.14985	26.373	26.276	26.426	0					9	3	3	0	0	0	0.36647	1	8472	8472		59.931	6.8418	1	173800			25421	5819	16887	16949	25765	25765					0.0898971836866167
LSAIEHVAEK	10	Unmodified	_LSAIEHVAEK_					0	0	0		ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant;ADGRF1|p.S617Afs*12|1|0.14|ENSG00000153292|chr6:47009586-47009586|T/-|frameshift_variant;ENSG00000153292|ENST00000371253|ADGRF1;ENST00000471487.5_1_6:46982380-46993719:-|nuORF	ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant	ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.8056030273438	2	548.803488	1095.59242	1.2519	0.00068706	1.9789	0.001086	3.2308	0.0017731	548.8045775526425	26.567	0.52794	26.567	26.13	26.658	0					31	17	2	0	0	0	0.50881	1	8120	8120		44.377	3.599	1	129160			25422	76	16888	16950	25766	25766					0.04845110643418593
LSAKCRVPSF	10	Unmodified	_LSAKCRVPSF_					0	0	0			REV__ENST00000430479.5_1_7:14029049-14029246:-|nuORF	REV__ENST00000430479.5_1_7:14029049-14029246:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.86956787109375	3	369.870826	1106.59065	-0.24082	-8.9073E-05	-2.9011	-0.001073	-3.1419	-0.0011621	369.8697495515516	33.708	0.22537	33.708	33.6	33.825	0					10	5	3	0	0	0	0.56931	1	12854	12854		37.812	2.6595	1	134390	+		25423	19158	16889	16951	25767	25767					0.041617783538185904
LSAKYRPD	8	Unmodified	_LSAKYRPD_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.25830078125	2	475.258717	948.50288	-0.43214	-0.00020538	-0.18328	-8.7105E-05	-0.61542	-0.00029248	475.2585461848508	34.106	0.46645	34.106	33.987	34.454	0					27	12	4	0	0	0	0.49216	1	12651	12651		60.972	2.19	1	437610	+		25424	13552	16890	16952	25768	25768					0.02656900754709568
LSALFSSKPS	10	Unmodified	_LSALFSSKPS_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7882690429688	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.211	1	39.211	38.711	39.711	0								0	0	0	0.30854	1	15415	15415		49.536	8.7579	1		+		25425	15549	16891	16953	25769	25769					0.04370323240414109
LSALGLRF	8	Unmodified	_LSALGLRF_					0	0	0		ENST00000451486.5_1_22:29197956-29218101:+|nuORF;ENST00000458080.1_1_22:29196681-29218101:+|nuORF;ENST00000422972.1_1_22:29214364-29218101:+|nuORF	ENST00000451486.5_1_22:29197956-29218101:+|nuORF	ENST00000451486.5_1_22:29197956-29218101:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.7688903808594	2	438.76872	875.522887	2.6566	0.0011656	-2.5624	-0.0011243	0.094222	4.1342E-05	438.76756067975947	37.958	0.29001	37.958	37.821	38.111	0					11	6	3	0	0	0	0.52345	1	14880	14880		57.811	0	1	247340			25426	9411	16892	16954	25770	25770					0.0801469648533839
LSALHRER	8	Unmodified	_LSALHRER_					0	0	0			REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF	REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2831115722656	2	491.283057	980.551562	-0.52496	-0.0002579	0.27522	0.00013521	-0.24974	-0.00012269	491.2832348027995	14.953	1.4684	14.953	14.807	16.275	0					81	35	3	0	0	0	0.27635	1	3901	3901		90.37	5.4543	1	3978900	+		25427	20122	16893	16955	25771	25771					0.06050814114473724
LSALKLLAP	9	Unmodified	_LSALKLLAP_					0	0	0			REV__ENST00000342584.3_1_5:473081-473207:-|nuORF	REV__ENST00000342584.3_1_5:473081-473207:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.30792236328125	2	463.307678	924.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.88	1	40.88	40.38	41.38	0								0	0	0	0.3304	1	16223	16223		29.15	0	1		+		25428	18461	16894	16956	25772	25772					0.13548709350709487
LSALKQLLL	9	Unmodified	_LSALKQLLL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.83355712890625	2	499.83406	997.653567	-0.049683	-2.4833E-05	-0.38738	-0.00019363	-0.43706	-0.00021846	499.83356736910497	34.561	0.17958	34.561	34.506	34.686	0					11	7	2	0	0	0	0.33044	1	11301	11301		47.657	0	1	66041			25429	1904	16895	16957	25773	25773					0.15464667413527877
LSALKQLLL	9	Unmodified	_LSALKQLLL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.8341064453125	2	499.83406	997.653567	-0.18228	-9.111E-05	0.046244	2.3115E-05	-0.13604	-6.7995E-05	499.8340710527358	34.876	0.31279	34.876	34.761	35.074	0					20	8	3	0	0	0	0.098791	1	13020	13020		79.713	0	1	505820			25430	1904	16895	16957	25774	25774					0.15464667413527877
LSALKQLLL	9	Unmodified	_LSALKQLLL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8343811035156	2	499.83406	997.653567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.842	1	34.842	34.342	35.342	0								0	0	0	0.1633	1	13461	13461		56.721	0	1				25431	1904	16895	16957	25775	25775					0.15464667413527877
LSALKQLLL	9	Unmodified	_LSALKQLLL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.8334045410156	2	499.83406	997.653567	-2.1543	-0.0010768	1.5143	0.00075688	-0.64003	-0.00031991	499.83463715449733	34.628	0.15963	34.628	34.557	34.717	0					6	4	2	0	0	0	0.45358	1	12271	12271		37.159	0	1	101080			25432	1904	16895	16957	25776	25776					0.15464667413527877
LSALLAEW	8	Unmodified	_LSALLAEW_					0	0	0		ENST00000562782.1_1_16:89180808-89181345:-|nuORF	ENST00000562782.1_1_16:89180808-89181345:-|nuORF	ENST00000562782.1_1_16:89180808-89181345:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.75140380859375	2	451.752736	901.490919	-0.015227	-6.8788E-06	-4.2439	-0.0019172	-4.2591	-0.0019241	451.75085125827854	15.738	0.10021	15.738	15.666	15.766	0					6	4	2	0	0	0	0.7126	1	3482	3482		31.955	3.7006	1	38865			25433	10726	16896	16958	25777	25777					0.0362328401151899
LSALSAKG	8	Unmodified	_LSALSAKG_					0	0	0			REV__ENST00000423536.5_1_20:37049325-37049487:-|nuORF	REV__ENST00000423536.5_1_20:37049325-37049487:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.7239074707031	2	373.723978	745.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.556	1	20.556	20.056	21.056	0								0	0	0	1.7419	1	6397	6397		60.972	3.1607	1		+		25434	19100	16897	16959	25778	25778					0.050504418059517775
LSALSRSVRA	10	Unmodified	_LSALSRSVRA_					0	0	0		ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4	ENST00000523568.1_7:102228019-102246337:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.88043212890625	3	353.88049	1058.61964	0.70926	0.00025099	-0.79363	-0.00028085	-0.084365	-2.9855E-05	353.8802650968505	14.985	0.13433	14.985	14.902	15.037	0					5	3	2	0	0	0	0.55603	1	3787	3787		36.318	4.7878	1	299840			25435	2398	16898	16960	25779	25779					0.09267638974483816
LSALTMHMF	9	Unmodified	_LSALTMHMF_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7577514648438	2	525.759181	1049.50381	2.0325	0.0010686	-2.0349	-0.0010699	-0.002469	-1.2981E-06	525.7578965835157	19.023	0.25719	19.023	18.853	19.11	0					13	7	2	0	0	0	0.57706	1	5621	5621		24.203	2.2429	1	113050	+		25436	12854	16899	16961	25780	25780					-0.018963441922551283
LSANHQIA	8	Unmodified	_LSANHQIA_					0	0	0			REV__ENST00000528826.1_1_11:76157982-76169407:+|nuORF	REV__ENST00000528826.1_1_11:76157982-76169407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.2298278808594	2	427.229959	852.445365	-0.40449	-0.00017281	0.013389	5.72E-06	-0.3911	-0.00016709	427.2299543171374	14.566	0.11765	14.566	14.508	14.626	0					4	2	2	0	0	0	0.37378	1	3666	3666		73.975	10.668	1	169480	+		25437	15689	16900	16962	25781	25781					0.013240585491303136
LSANIQLYQ	9	Unmodified	_LSANIQLYQ_					0	0	0			REV__ENST00000595395.1_1_19:42061422-42061712:+|nuORF	REV__ENST00000595395.1_1_19:42061422-42061712:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2855834960938	2	525.284931	1048.55531	1.6272	0.00085474	-1.652	-0.00086779	-0.024839	-1.3048E-05	525.2846052196879	27.347	0.32283	27.347	27.187	27.51	0					16	6	4	0	0	0	0.24334	1	9766	9766		49.442	0	1	879810	+		25438	20558	16901	16963	25782	25782					0.032974390976505674
LSAPATPSPG	10	Unmodified	_LSAPATPSPG_					0	0	0		ENST00000446546.2_1_10:75545483-75546011:+|nuORF	ENST00000446546.2_1_10:75545483-75546011:+|nuORF	ENST00000446546.2_1_10:75545483-75546011:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.23736572265625	2	449.23745	896.460347	0.063462	2.851E-05	-0.49084	-0.00022051	-0.42738	-0.000192	449.23728453184214	19.865	0.11023	19.865	19.802	19.912	0					6	3	2	0	0	0	0.39566	1	5211	5211		56.721	1.9447	1	286700			25439	9618	16902	16964	25783	25783					0.007975056264854175
LSAPEKESTAL	11	Unmodified	_LSAPEKESTAL_					0	0	0		nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.3060913085938	2	573.306061	1144.59757	3.3623	0.0019276	-2.0789	-0.0011918	1.2834	0.00073577	573.3048974856581	29.034	0.51486	29.034	28.675	29.19	0					19	10	3	0	0	0	0.37057	1	10601	10601		54.722	6.5344	1	1043900			25440	11692	16903	16965	25784	25784					0.0310536971539932
LSAPLPIDRR	10	Unmodified	_LSAPLPIDRR_					0	0	0			REV__ENST00000561040.1_1_19:47919907-47920643:-|nuORF	REV__ENST00000561040.1_1_19:47919907-47920643:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3408203125	2	569.340572	1136.66659	0.172	9.7925E-05	0.4055	0.00023087	0.57749	0.00032879	569.3408302233495	19.818	0.16913	19.818	19.741	19.91	0					7	3	3	0	0	0	0.63019	1	6330	6330		32.812	6.1195	1	304960	+		25441	20289	16904	16966	25785	25785					0.10372498525612173
LSAPPGLLRA	10	Unmodified	_LSAPPGLLRA_					0	0	0			REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF	REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.2064514160156	3	332.206315	993.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.605	1	23.605	23.105	24.105	0								0	0	0	0.3185	1	6853	6853		47.96	5.0953	1		+		25442	15435	16905	16967	25786	25786					0.10006039576853709
LSAQEKLGQ	9	Unmodified	_LSAQEKLGQ_					0	0	0			REV__ENST00000579241.1_1_17:73486365-73488110:+|nuORF	REV__ENST00000579241.1_1_17:73486365-73488110:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2688903808594	2	487.269281	972.52401	-0.95808	-0.00046685	0.629	0.00030649	-0.32908	-0.00016035	487.2695402674099	25.218	0.1987	25.218	25.083	25.282	0					13	6	3	0	0	0	0.16002	1	7794	7794		66.429	7.6473	1	225470	+		25443	20443	16906	16968	25787	25787					0.0366486606358194
LSARFLIVT	9	Unmodified	_LSARFLIVT_					0	0	0		ENST00000415440.3_1_19:19790009-19790072:+|nuORF	ENST00000415440.3_1_19:19790009-19790072:+|nuORF	ENST00000415440.3_1_19:19790009-19790072:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.3163146972656	2	510.316035	1018.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.484	1	50.484	49.984	50.984	0								0	0	0	0.3368	1	18916	18916		27.882	0	1				25444	9344	16907	16969	25788	25788					0.1089521023668567
LSARGRRG	8	Unmodified	_LSARGRRG_					0	0	0			REV__ENST00000564281.5_1_16:89680092-89704100:+|nuORF	REV__ENST00000564281.5_1_16:89680092-89704100:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.76348876953125	2	436.762292	871.510031	2.6691	0.0011658	-0.025209	-1.101E-05	2.6439	0.0011547	436.7622925620068	16.914	0.61259	16.914	16.714	17.326	0					31	12	4	0	0	0	0.59411	1	4748	4748		50.025	50.025	1	6100400	+		25445	20322	16908	16970	25789	25789					0.0691367814580417
LSASARTM	8	Oxidation (M)	_LSASARTM(Oxidation (M))_		LSASARTM(1)		LSASARTM(55)	0	0	1		ENST00000440859.7_1_7:107384347-107384455:+|nuORF	ENST00000440859.7_1_7:107384347-107384455:+|nuORF	ENST00000440859.7_1_7:107384347-107384455:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.7136535644531	2	426.715827	851.417102	-0.22755	-9.7098E-05	-4.0266	-0.0017182	-4.2541	-0.0018153	426.71361340199036	28.151	0.19164	28.151	28.056	28.248	0					9	6	2	0	0	0	0.5535	1	8752	8752		54.776	12.38	1	48205			25446	9572	16909	16971	25790	25790		383			-0.014550074224530363
LSASAVTVAG	10	Unmodified	_LSASAVTVAG_					0	0	0			REV__RHCG|p.A359V|1|0.62|ENSG00000140519|chr15:89477553-89477553|G/A|missense_variant	REV__RHCG|p.A359V|1|0.62|ENSG00000140519|chr15:89477553-89477553|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2461853027344	2	438.245275	874.475997	0.008993	3.9412E-06	0.19944	8.7405E-05	0.20844	9.1346E-05	438.24525723693824	21.496	0.18729	21.496	21.362	21.55	0					7	4	2	0	0	0	0.39566	1	6831	6831		56.721	3.7844	1	128160	+		25447	21462	16910	16972	25791	25791					0.033737921435204044
LSASGTLTSGR	11	Unmodified	_LSASGTLTSGR_					0	0	0		ENST00000405409.6_2_22:36174106-36177783:-|nuORF	ENST00000405409.6_2_22:36174106-36177783:-|nuORF	ENST00000405409.6_2_22:36174106-36177783:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.28515625	2	525.28292	1048.55129	1.7745	0.00093213	1.6051	0.00084311	3.3796	0.0017752	525.2843620223913	27.364	0.31499	27.364	27.254	27.569	0					15	6	3	0	0	0	0.14858	1	9916	9916		80.455	0.74203	1	918900			25448	9277	16911	16973	25792	25792					0.028953496039548554
LSASPVYVL	9	Unmodified	_LSASPVYVL_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-3|E2F7	REV__nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.77349853515625	2	474.773668	947.532783	0.30009	0.00014247	-0.87482	-0.00041534	-0.57473	-0.00027287	474.7732989203576	36.022	0.31817	36.022	35.865	36.183	0					15	8	2	0	0	0	0.35045	1	13533	13533		45.952	3.5558	1	206770	+		25449	16075	16912	16974	25793	25793					0.056918397000458754
LSASTTEGRK	10	Unmodified	_LSASTTEGRK_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2857666015625	2	525.28292	1048.55129	1.906	0.0010012	2.1734	0.0011417	4.0794	0.0021428	525.2845387102285	27.382	0.30416	27.382	27.209	27.513	0					19	7	4	0	0	0	0.36476	1	9549	9549		60.118	5.3959	1	601990	+		25450	15312	16913	16975	25794	25794					0.028953496039548554
LSASTTEGRK	10	Unmodified	_LSASTTEGRK_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2855224609375	2	525.28292	1048.55129	1.1721	0.00061569	3.3599	0.0017649	4.532	0.0023806	525.2851331642757	27.21	0.13377	27.21	27.129	27.262	0					8	3	3	0	0	0	0.536	1	8865	8865		41.427	21.43	1	139120	+		25451	15312	16913	16975	25795	25795					0.028953496039548554
LSATLALGLQ	10	Unmodified	_LSATLALGLQ_					0	0	0			REV__ENST00000531383.5_1_11:62383175-62383313:-|nuORF	REV__ENST00000531383.5_1_11:62383175-62383313:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.79742431640625	2	493.797675	985.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.442	1	38.442	37.942	38.942	0								0	0	0	0.29806	1	14608	14608		51.193	5.2204	1		+		25452	20059	16914	16976	25796	25796					0.08742913620085346
LSATQSLHGL	10	Unmodified	_LSATQSLHGL_					0	0	0			REV__ENSG00000112685|ENST00000230449|EXOC2	REV__ENSG00000112685|ENST00000230449|EXOC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7532958984375	2	513.782556	1025.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.963	1	23.963	23.463	24.463	0								0	0	0	0.3805	1	8326	8326		36.447	3.6343	1		+		25453	14013	16915	16977	25797	25797					0.03880554954912441
LSAVADAAVL	10	Unmodified	_LSAVADAAVL_					0	0	0			REV__nc|ENSG00000126264|Q9UBK5-2|HCST	REV__nc|ENSG00000126264|Q9UBK5-2|HCST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2685241699219	2	465.26875	928.522947	0.51156	0.00023801	-0.73762	-0.00034319	-0.22606	-0.00010518	465.26838494864387	34.337	0.46775	34.337	34.037	34.505	0					22	12	2	0	0	0	0.28723	1	12690	12690		68.787	10.005	1	428690	+		25454	14465	16916	16978	25798	25798					0.055826516946467564
LSAVDRAL	8	Unmodified	_LSAVDRAL_					0	0	0			REV__ENST00000543164.5_1_12:6602847-6602940:-|nuORF	REV__ENST00000543164.5_1_12:6602847-6602940:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.74755859375	2	422.747985	843.481417	-0.21238	-8.9784E-05	-0.30832	-0.00013034	-0.5207	-0.00022013	422.7477425150707	28.15	0.25297	28.15	28.055	28.308	0					7	5	2	0	0	0	0.25987	1	10269	10269		95.815	0	1	273090	+		25455	20149	16917	16979	25799	25799					0.053415157259905754
LSAVGGLL	8	Unmodified	_LSAVGGLL_					0	0	0			REV__ENSG00000112514|ENST00000488034|CUTA	REV__ENSG00000112514|ENST00000488034|CUTA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.23046875	2	365.228897	728.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.008	1	33.008	32.508	33.508	0								0	0	0	1.7419	1	12499	12499		28.254	0	1		+		25456	14009	16918	16980	25800	25800					0.06815629811342205
LSAVNEILL	9	Unmodified	_LSAVNEILL_					0	0	0			REV__ENSG00000233276|ENST00000419783|GPX1	REV__ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2918701171875	2	486.292225	970.569897	-0.68624	-0.00033371	-0.23857	-0.00011602	-0.92481	-0.00044973	486.29199682211504	40.973	0.26331	40.973	40.794	41.057	0					11	6	2	0	0	0	0.21263	1	16116	16116		60.118	5.2237	1	86964	+		25457	17651	16919	16981	25801	25801					0.08343511245811897
LSAVSTWNG	9	Unmodified	_LSAVSTWNG_					0	0	0			REV__WWOX|p.K274Nfs*53|1|0.24|ENSG00000186153|chr16:78432515-78432515|A/-|frameshift_variant	REV__WWOX|p.K274Nfs*53|1|0.24|ENSG00000186153|chr16:78432515-78432515|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.73443603515625	2	467.735074	933.455596	-0.43551	-0.0002037	0.51538	0.00024106	0.079865	3.7356E-05	467.73526204979606	28.584	0.088924	28.584	28.554	28.643	0					6	4	2	0	0	0	0.2873	1	8940	8940		51.335	3.6781	1	41749	+		25458	22297	16920	16982	25802	25802					-0.013793785162761196
LSAVVIGLLG	10	Unmodified	_LSAVVIGLLG_					0	0	0			REV__ENST00000599167.5_1_19:50000650-50000725:+|nuORF	REV__ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.3054504394531	2	471.305136	940.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.179	1	36.179	35.679	36.679	0								0	0	0	0.4201	1	11868	11868		23.042	1.0826	1		+		25459	20588	16921	16983	25803	25803					0.12304405488112025
LSAWTNDAMA	10	Unmodified	_LSAWTNDAMA_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7457885742188	2	540.244949	1078.47534	0.30708	0.0001659	-1.2038	-0.00065035	-0.89672	-0.00048445	540.7455162902801	36.796	0.16462	36.796	36.729	36.894	0					7	5	2	0	0	0	0.56931	1	14361	14361		37.812	3.639	1	93171			25460	2554	16922	16984	25804	25804					-0.060753705678507686
LSCAKMLQS	9	Unmodified	_LSCAKMLQS_					0	0	0		ENST00000554528.1_1_14:104381385-104387854:-|nuORF;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENST00000554528.1_1_14:104381385-104387854:-|nuORF	ENST00000554528.1_1_14:104381385-104387854:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.74908447265625	2	490.748813	979.483073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.052	1	17.052	16.552	17.552	0								0	0	0	0.28666	1	4997	4997		37.812	0.65241	1				25461	10648	16923	16985	25805	25805					-0.007489345719136509
LSCALFKI	8	Carbamidomethyl (C)	_LSC(Carbamidomethyl (C))ALFKI_	LSC(1)ALFKI		LSC(44)ALFKI		0	1	0			REV__tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	REV__tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2701110839844	2	476.270238	950.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.828	1	45.828	45.328	46.328	0								0	0	0	1.7419	1	18360	18360		44.117	8.4985	1		+		25462	21804	16924	16986	25806	25806	744				0.04868203547835037
LSCIQEVR	8	Unmodified	_LSCIQEVR_					0	0	0		ENST00000598463.5_1_19:51301262-51301442:-|nuORF	ENST00000598463.5_1_19:51301262-51301442:-|nuORF	ENST00000598463.5_1_19:51301262-51301442:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.25006103515625	2	474.252577	946.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.267	1	25.267	24.767	25.767	0								0	0	0	1.7419	1	8008	8008		42.396	0	1				25463	11018	16925	16987	25807	25807					0.015215410200198676
LSCKSMQSP	9	Unmodified	_LSCKSMQSP_					0	0	0			REV__ENST00000372045.5_1_X:109964733-110005983:-|nuORF	REV__ENST00000372045.5_1_X:109964733-110005983:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7301940917969	2	490.73062	979.446687	0.59158	0.0002903	-1.7185	-0.00084333	-1.1269	-0.00055302	490.7299206692034	41.354	0.20007	41.354	41.26	41.46	0					14	9	2	0	0	0	0.12834	1	16257	16257		72.879	16.158	1	91082	+		25464	18661	16926	16988	25808	25808					-0.04385811468625889
LSCLGASLQ	9	Unmodified	_LSCLGASLQ_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.F1125Lfs*31|1|0.34|ENSG00000117983|chr11:1238947-1238948|TC/-|frameshift_variant;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2335510253906	2	446.233853	890.453153	-0.44482	-0.00019849	-0.057055	-2.546E-05	-0.50188	-0.00022395	446.2338431074358	34.939	0.16789	34.939	34.83	34.998	0					5	3	2	0	0	0	0.41113	1	13456	13456		40.778	0	1	92399			25465	3057;11390	16927	16989	25809	25809					0.0035444975439986592
LSCPLDLTL	9	Carbamidomethyl (C)	_LSC(Carbamidomethyl (C))PLDLTL_	LSC(1)PLDLTL		LSC(64)PLDLTL		0	1	0		nc|ENSG00000109738|P48167-2|GLRB;ENSG00000109738|ENST00000264428|GLRB	nc|ENSG00000109738|P48167-2|GLRB	nc|ENSG00000109738|P48167-2|GLRB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2759399414062	2	516.275718	1030.53688	1.5284	0.00078909	-1.6263	-0.0008396	-0.097842	-5.0513E-05	516.2750522798957	40.011	0.27544	40.011	39.912	40.188	0					17	6	4	0	0	0	0.17854	1	15867	15867		64.207	11.118	1	441900			25466	2588	16928	16990	25810	25810	102				0.02283561131434908
LSCVAIAFGVL	11	Unmodified	_LSCVAIAFGVL_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|174|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|174|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|174|1|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.8768005371094	3	364.875577	1091.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.662	1	18.662	18.162	19.162	0								0	0	0	0.39271	1	5766	5766		38.754	2.3069	1				25467	11290	16929	16991	25811	25811					0.06276430782099851
LSCVRSLSL	9	Carbamidomethyl (C)	_LSC(Carbamidomethyl (C))VRSLSL_	LSC(1)VRSLSL		LSC(60)VRSLSL		0	1	0			REV__ENST00000344111.3_1_7:1007687-1008335:-|nuORF	REV__ENST00000344111.3_1_7:1007687-1008335:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.5268249511719	3	345.526948	1033.55902	-1.9641	-0.00067866	1.1907	0.00041142	-0.77344	-0.00026725	345.52748244542124	24.381	0.39851	24.381	24.29	24.689	0					20	9	4	0	0	0	0.21263	1	7580	7580		60.118	14.146	1	3010000	+		25468	18472	16930	16992	25812	25812	656				0.043577855998591986
LSDALQPIN	9	Unmodified	_LSDALQPIN_					0	0	0			REV__ENST00000528411.1_1_11:85734561-85780352:-|nuORF	REV__ENST00000528411.1_1_11:85734561-85780352:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.76361083984375	2	485.763832	969.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.69	1	37.69	37.19	38.19	0								0	0	0	0.15451	1	14307	14307		58.782	0.55203	1		+		25469	13210	16931	16993	25813	25813					0.02713463689292439
LSDALTQKL	9	Unmodified	_LSDALTQKL_					0	0	0			REV__ENST00000558838.1_1_15:101845315-101845453:+|nuORF	REV__ENST00000558838.1_1_15:101845315-101845453:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7878112792969	2	494.787307	987.560061	-0.06585	-3.2582E-05	-1.0082	-0.00049886	-1.0741	-0.00053144	494.78692870912795	38.702	0.16486	38.702	38.644	38.809	0					13	9	2	0	0	0	0.24095	1	12602	12602		56.721	0	1	114880	+		25470	20273	16932	16994	25814	25814					0.06578323240421469
LSDAPVNSI	9	Unmodified	_LSDAPVNSI_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2423400878906	2	458.242732	914.470912	-0.43927	-0.00020129	-0.7138	-0.00032709	-1.1531	-0.00052838	458.2424672294268	35.645	0.21751	35.645	35.535	35.752	0					7	4	2	0	0	0	0.13267	1	13769	13769		71.877	2.2498	1	181930	+		25471	12887	16933	16995	25815	25815					0.010254882809135779
LSDCKRNLE	9	Unmodified	_LSDCKRNLE_					0	0	0		TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant;nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15;TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant;TEX15|p.R1708Kfs*6|1|0.41|ENSG00000133863|chr8:30843895-30843896|-/T|frameshift_variant	TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant	TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.2703857421875	2	539.271498	1076.52844	-1.4766	-0.00079631	-0.1923	-0.0001037	-1.6689	-0.00090001	539.2712595984516	23.71	0.1198	23.71	23.627	23.747	0					9	3	3	0	0	0	0.24334	1	7286	7286		32.812	0	1	232170			25472	3876	16934	16996	25816	25816					-0.006759927851817338
LSDDRKLKI	9	Unmodified	_LSDDRKLKI_					0	0	0		nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;ENST00000493438.5_1_9:135973976-135976008:-|nuORF	nc|ENSG00000160271|Q12967-3|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.2203369140625	3	363.220513	1086.63971	-0.95179	-0.00034571	1.0417	0.00037838	0.089941	3.2669E-05	363.2208714832648	29.266	0.24757	29.266	29.136	29.383	0					15	10	2	0	0	0	0.57706	1	9488	9488		31.53	14.062	1	168630			25473	5353	16935	16997	25817	25817					0.09985389914413645
LSDEEKKK	8	Unmodified	_LSDEEKKK_					0	0	0		tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.76873779296875	2	488.769114	975.523675	0.76572	0.00037426	-1.3407	-0.00065529	-0.57497	-0.00028103	488.7683043640716	21.701	0.22698	21.701	21.61	21.837	0					11	5	3	0	0	0	0.27512	1	6948	6948		90.777	8.4716	1	407470			25474	23017	16936	16998	25818	25818					0.034934463437252816
LSDEIQVQ	8	Unmodified	_LSDEIQVQ_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2398681640625	2	466.24019	930.465826	-2.2664	-0.0010567	2.3823	0.0011107	0.11594	5.4057E-05	466.2411700466131	18.79	0.20706	18.79	18.638	18.845	0					7	5	2	0	0	0	0.64144	1	4985	4985		42.396	0	1	80995			25475	3766	16937	16999	25819	25819					-0.0021881558169525306
LSDGEKVLV	9	Unmodified	_LSDGEKVLV_					0	0	0		ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2736511230469	2	480.274032	958.533512	-2.9254	-0.001405	1.8996	0.00091231	-1.0258	-0.00049267	480.2748925857888	31.836	0.57329	31.836	31.503	32.076	0					38	16	3	0	0	0	0.24095	1	10974	10974		56.721	0	1	239930			25476	4779	16938	17000	25820	25820					0.05258634349104341
LSDGLELLE	9	Unmodified	_LSDGLELLE_					0	0	0			REV__ENSG00000001629|ENST00000265742|ANKIB1	REV__ENSG00000001629|ENST00000265742|ANKIB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.26226806640625	2	494.763497	987.512442	-1.2569	-0.00062185	-0.015069	-7.4556E-06	-1.2719	-0.00062931	494.76561139344693	33.182	0.48219	33.182	32.984	33.466	0					38	20	3	0	0	0	0.35045	1	11132	11132		45.952	1.8352	1	184600	+		25477	12813	16939	17001	25821	25821					0.018186242495858096
LSDGLLLEE	9	Unmodified	_LSDGLLLEE_					0	0	0		ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENSG00000163362|ENST00000413687|INAVA	ENSG00000163362|ENST00000413687|INAVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7662048339844	2	494.763497	987.512442	2.8192	0.0013948	2.2686	0.0011224	5.0878	0.0025173	494.76475975325525	38.48	0.6366	38.48	38.283	38.92	0					43	13	4	0	0	0	0.17854	2	15100	15100;15115		64.207	14.766	1	2666300			25478	5548	16940	17002	25822;25823	25822					0.01818624249574441
LSDHISKFG	9	Unmodified	_LSDHISKFG_					0	0	0			REV__ENSG00000153347|ENST00000283357|FAM81B	REV__ENSG00000153347|ENST00000283357|FAM81B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2720642089844	2	502.263999	1002.51345	2.9272	0.0014702	1.4513	0.00072896	4.3785	0.0021992	502.26431604068597	30.103	0.80078	30.103	29.862	30.663	0					51	16	5	0	0	0	0.48389	1	11080	11080		34.173	0	1	2942300	+		25479	15541	16941	17003	25824	25824					0.012288834091464196
LSDKRDKY	8	Unmodified	_LSDKRDKY_					0	0	0		ENST00000366730.5_1_1:228327667-228327715:+|nuORF	ENST00000366730.5_1_1:228327667-228327715:+|nuORF	ENST00000366730.5_1_1:228327667-228327715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7747802734375	2	512.774731	1023.53491	1.0786	0.00055305	-1.2797	-0.00065621	-0.20118	-0.00010316	512.7740322643673	29.762	0.40828	29.762	29.614	30.022	0					25	10	4	0	0	0	0.34592	1	10679	10679		76.774	5.4784	1	1716800			25480	8897	16942	17004	25825	25825					0.02408268437852712
LSDLKTIIS	9	Unmodified	_LSDLKTIIS_					0	0	0		tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2975769042969	2	495.297507	988.580462	0.93247	0.00046185	-0.7778	-0.00038524	0.15467	7.6607E-05	495.29698234815373	33.191	0.15754	33.191	33.091	33.249	0					7	3	3	0	0	0	0.22377	1	12604	12604		58.782	7.4465	1	564230			25481	22833	16943	17005	25826	25826					0.08571493900251426
LSDMLQQL	8	Unmodified	_LSDMLQQL_					0	0	0		PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000562407.1_1_16:23695226-23699079:+|nuORF	PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562407.1_1_16:23695226-23699079:+|nuORF	ENST00000562407.1_1_16:23695226-23699079:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.24676513671875	2	474.24696	946.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.925	1	28.925	28.425	29.425	0								0	0	0	1.7419	1	9666	9666		76.774	2.7994	1				25482	5937;10720	16944	17006	25827	25827					0.003987189258964463
LSDQRPMAP	9	Unmodified	_LSDQRPMAP_					0	0	0		ENST00000495200.1_1_2:198365246-198365531:+|nuORF	ENST00000495200.1_1_2:198365246-198365531:+|nuORF	ENST00000495200.1_1_2:198365246-198365531:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7572326660156	2	507.755484	1013.49641	1.1228	0.00057013	2.7828	0.001413	3.9056	0.0019831	507.7566877753232	12.307	0.088305	12.307	12.265	12.354	0					4	2	2	0	0	0	0.20551	1	2751	2751		60.972	8.6728	1	117370			25483	10105	16945	17007	25828	25828					-0.009793604683068224
LSDQTKEKE	9	Unmodified	_LSDQTKEKE_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.2749633789062	2	539.274761	1076.53497	0.88495	0.00047723	-0.42916	-0.00023143	0.45579	0.0002458	539.274485726271	13.77	0.10379	13.77	13.729	13.832	0					6	4	2	0	0	0	0.035106	1	2738	2738		104.01	35.167	1	108120			25484	2416	16946	17008	25829	25829					-0.00023776352782078902
LSDQTKEKE	9	Unmodified	_LSDQTKEKE_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2752685546875	2	539.274761	1076.53497	0.24997	0.0001348	0.48476	0.00026142	0.73473	0.00039622	539.2749104116939	14.055	0.49171	14.055	13.886	14.378	0					14	12	2	0	0	0	0.00026591	1	3352	3352		190.26	62.8	1	835290			25485	2416	16946	17008	25830	25830					-0.00023776352782078902
LSDQTKEKE	9	Unmodified	_LSDQTKEKE_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2767333984375	2	539.274761	1076.53497	-0.14254	-7.6868E-05	1.7977	0.00096945	1.6552	0.00089258	539.2760938798533	13.806	0.087855	13.806	13.749	13.837	0					7	4	2	0	0	0	0.035106	1	2884	2884		104.01	18.853	1	100710			25486	2416	16946	17008	25831	25831					-0.00023776352782078902
LSDQTKEKE	9	Unmodified	_LSDQTKEKE_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.2747802734375	2	539.274761	1076.53497	-1.4759	-0.00079593	2.5211	0.0013596	1.0452	0.00056365	539.2762104837351	13.831	0.096236	13.831	13.757	13.853	0					8	5	2	0	0	0	0.047855	1	2827	2827		96.034	25.217	1	112620			25487	2416	16946	17008	25832	25832					-0.00023776352782078902
LSDQTSGVVL	10	Unmodified	_LSDQTSGVVL_					0	0	0			REV__ENST00000527959.1_1_11:66290957-66294394:+|nuORF	REV__ENST00000527959.1_1_11:66290957-66294394:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.77044677734375	2	509.774396	1017.53424	-0.48433	-0.0002469	-3.591	-0.0018306	-4.0753	-0.0020775	509.77201405744427	32.381	0.11813	32.381	32.272	32.39	0					9	5	2	0	0	0	0.50881	1	10783	10783		44.377	0	1	45551	+		25488	16568	16947	17009	25833	25833					0.026174289981554466
LSDRKIISN	9	Unmodified	_LSDRKIISN_					0	0	0			REV__SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	REV__SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3041381835938	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.025	1	49.025	48.525	49.525	0								0	0	0	0.35377	1	18482	18482		24.519	1.4767	1		+		25489	21596	16948	17010	25834	25834					0.07224530363305348
LSDVPLER	8	Unmodified	_LSDVPLER_					0	0	0			REV__ENST00000497639.5_1_10:69644980-69647288:+|nuORF	REV__ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7588195800781	2	464.758549	927.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.39	1	21.39	20.89	21.89	0								0	0	0	1.7419	1	6791	6791		45.952	1.8352	1		+		25490	19788	16949	17011	25835	25835					0.03589481034862274
LSDVRNQL	8	Unmodified	_LSDVRNQL_					0	0	0			REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.76190185546875	2	472.761623	943.508694	0.59084	0.00027933	0.40092	0.00018954	0.99176	0.00046887	472.7620521702312	26.669	0.36737	26.669	26.56	26.927	0					10	7	2	0	0	0	0.53424	1	9584	9584		56.721	3.3696	1	623530	+		25491	12421	16950	17012	25836	25836					0.03467999266388233
LSDYPWFHG	9	Unmodified	_LSDYPWFHG_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.2569580078125	2	561.256174	1120.49779	0.48002	0.00026941	0.90581	0.00050839	1.3858	0.0007778	561.2567305847407	16.399	0.2316	16.399	16.303	16.534	0					14	5	4	0	0	0	0.41354	1	4424	4424		40.573	1.3198	1	2127800			25492	5395	16951	17013	25837	25837					-0.057634031079032866
LSDYVKVSN	9	Unmodified	_LSDYVKVSN_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7623291015625	2	512.769114	1023.52368	-1.6774	-0.00086011	-3.4527	-0.0017704	-5.1301	-0.0026306	513.2686845360417	35.041	0.42024	35.041	34.864	35.285	0					24	13	3	0	0	0	0.27249	1	12489	12489		52.937	5.2794	1	173130			25493	3101	16952	17014	25838	25838					0.01285446343717922
LSDYVKVSN	9	Unmodified	_LSDYVKVSN_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7711181640625	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.621	1	33.621	33.121	34.121	0								0	0	0	0.2591	1	11819	11819		42.396	1.618	1				25494	3101	16952	17014	25839	25839					0.01285446343717922
LSEEDHNKL	9	Unmodified	_LSEEDHNKL_					0	0	0			REV__nc|ENSG00000114867|Q04637-4|EIF4G1;REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF;REV__nc|ENSG00000075151|O43432-4|EIF4G3	REV__nc|ENSG00000114867|Q04637-4|EIF4G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7685546875	2	542.767103	1083.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.421	1	42.421	41.921	42.921	0								0	0	0	0.21054	1	16929	16929		49.442	2.9848	1		+		25495	14089;19252;12786	16953	17015	25840	25840					-0.018766431499898317
LSEEETKL	8	Unmodified	_LSEEETKL_					0	0	0		WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;nc|ENSG00000171804|Q6ZQQ6|WDR87	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7484130859375	2	474.747847	947.481142	-0.60307	-0.0002863	-1.4399	-0.00068359	-2.043	-0.00096989	474.7485095900716	29.074	0.41418	29.074	28.86	29.274	0					22	8	4	0	0	0	0.43813	1	10642	10642		66.429	0	1	708440			25496	6321	16954	17016	25841	25841					0.005300512154803982
LSEISNPK	8	Unmodified	_LSEISNPK_					0	0	0		FOXO1|p.E369K|1|0.17|ENSG00000150907|chr13:40560386-40560386|C/T|missense_variant	FOXO1|p.E369K|1|0.17|ENSG00000150907|chr13:40560386-40560386|C/T|missense_variant	FOXO1|p.E369K|1|0.17|ENSG00000150907|chr13:40560386-40560386|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2454528808594	2	444.245275	886.475997	0.21889	9.724E-05	0.0010253	4.5547E-07	0.21991	9.7696E-05	444.24511745249487	20.992	0.34346	20.992	20.731	21.074	0					17	11	2	0	0	0	0.63077	1	5656	5656		44.117	5.3107	1	83657			25497	11145	16955	17017	25842	25842					0.02821792143527091
LSEKQSIVY	9	Unmodified	_LSEKQSIVY_					0	0	0			REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7929077148438	2	533.792589	1065.57063	-0.46505	-0.00024824	1.3173	0.00070315	0.85222	0.00045491	533.7932459743878	24.41	0.1603	24.41	24.343	24.504	0					8	5	2	0	0	0	0.25109	1	7464	7464		55.504	4.1688	1	158620	+		25498	12436	16956	17018	25843	25843					0.04046305894848956
LSEKRLSN	8	Unmodified	_LSEKRLSN_					0	0	0			REV__nc|ENSG00000164074|Q0P651-4|ABHD18	REV__nc|ENSG00000164074|Q0P651-4|ABHD18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7711181640625	2	473.769448	945.524344	0.67303	0.00031886	3.5787	0.0016955	4.2517	0.0020143	473.7706976127798	25.71	0.40129	25.71	25.65	26.051	0					9	6	2	0	0	0	0.41701	1	9047	9047		68.787	2.3575	1	593360	+		25499	15958	16957	17019	25844	25844					0.04940285783413856
LSELGGKPTN	10	Unmodified	_LSELGGKPTN_					0	0	0		ENST00000323460.9_1_3:196658967-196659150:+|nuORF	ENST00000323460.9_1_3:196658967-196659150:+|nuORF	ENST00000323460.9_1_3:196658967-196659150:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2743835449219	2	508.274564	1014.53457	-0.025566	-1.2994E-05	0.10135	5.1512E-05	0.075781	3.8517E-05	508.27459163868104	34.254	0.32157	34.254	34.132	34.454	0					23	8	3	0	0	0	0.36647	1	12749	12749		59.931	1.1488	1	1350800			25500	8631	16958	17020	25845	25845					0.02788848718000736
LSELIRQL	8	Unmodified	_LSELIRQL_					0	0	0		ENST00000378669.5_1_2:42578093-42578192:-|nuORF	ENST00000378669.5_1_2:42578093-42578192:-|nuORF	ENST00000378669.5_1_2:42578093-42578192:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2973327636719	2	486.297842	970.581131	-1.2404	-0.0006032	1.0301	0.00050095	-0.21025	-0.00010224	486.2985208004833	37.482	0.1711	37.482	37.391	37.562	0					12	9	2	0	0	0	0.68432	1	12661	12661		35.618	1.4457	1	124570			25501	9074	16959	17021	25846	25846					0.09466333339935318
LSEQPARA	8	Unmodified	_LSEQPARA_					0	0	0		PPP2R5B|p.G18Rfs*72|1|0.34|ENSG00000068971|chr11:64925780-64925781|-/C|frameshift_variant	PPP2R5B|p.G18Rfs*72|1|0.34|ENSG00000068971|chr11:64925780-64925781|-/C|frameshift_variant	PPP2R5B|p.G18Rfs*72|1|0.34|ENSG00000068971|chr11:64925780-64925781|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2348327636719	2	436.235242	870.45593	0.64947	0.00028332	-1.2418	-0.00054171	-0.59232	-0.00025839	436.23480315936257	34.068	0.23276	34.068	33.959	34.192	0					15	6	3	0	0	0	0.54629	1	12642	12642		55.504	0.72789	1	617570			25502	11961	16960	17022	25847	25847					0.01552041203558474
LSEREEALK	9	Unmodified	_LSEREEALK_					0	0	0		nc|ENSG00000129422|Q9ULD2-6|MTUS1;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;nc|ENSG00000129422|Q9ULD2-7|MTUS1;nc|ENSG00000129422|Q9ULD2-3|MTUS1;ENST00000521635.5_1_8:17532522-17541986:-|nuORF	nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-6|MTUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7938842773438	2	537.793121	1073.57169	1.9927	0.0010717	-0.68843	-0.00037023	1.3043	0.00070143	537.7928012794584	15.888	0.11587	15.888	15.832	15.947	0					4	2	2	0	0	0	0.12834	1	4298	4298		72.879	4.0331	1	1201800			25503	3597	16961	17023	25848	25848					0.037845202637299735
LSERLAAI	8	Unmodified	_LSERLAAI_					0	0	0			REV__ENST00000520150.5_1_5:179268915-179285842:-|nuORF	REV__ENST00000520150.5_1_5:179268915-179285842:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.76336669921875	2	436.763635	871.512717	-0.55319	-0.00024161	0.024951	1.0898E-05	-0.52824	-0.00023071	436.7637013844278	32.531	0.21891	32.531	32.421	32.64	0					10	4	3	0	0	0	0.32597	1	12285	12285		79.713	0	1	312240	+		25504	19947	16962	17024	25849	25849					0.071820887600893
LSESELLAVL	10	Unmodified	_LSESELLAVL_					0	0	0		ENST00000429694.1_1:144604445-144614919:+|nuORF	ENST00000429694.1_1:144604445-144614919:+|nuORF	ENST00000429694.1_1:144604445-144614919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.54150390625	3	358.54114	1072.60159	3.1078	0.0011143	-1.1649	-0.00041765	1.943	0.00069664	358.5405939271172	30.759	0.11646	30.759	30.73	30.847	0					6	4	2	0	0	0	0.7005	1	9837	9837		27.047	0.98393	1	58357			25505	9476	16963	17025	25850	25850					0.06819459209100387
LSESGVSVK	9	Unmodified	_LSESGVSVK_					0	0	0		ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2;ATP2C2|p.Y727Tfs*11|2|0.26|ENSG00000064270|chr16:84459146-84459146|T/-|frameshift_variant	ENSG00000064270|ENST00000262429|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.249755859375	2	453.250557	904.486562	0.30715	0.00013922	-3.1047	-0.0014072	-2.7976	-0.001268	453.24919805125535	33.728	0.26207	33.728	33.616	33.878	0					19	7	3	0	0	0	0.14603	1	11846	11846		68.787	2.3575	1	510340			25506	1345	16964	17026	25851	25851					0.030497747979552514
LSESIVGRPV	10	Unmodified	_LSESIVGRPV_					0	0	0			REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	352.87322998046875	3	352.873113	1055.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.99	1	17.99	17.49	18.49	0								0	0	0	0.39244	1	4404	4404		37.508	5.8739	1		+		25507	20506	16965	17027	25852	25852					0.07193414506036788
LSEVERIA	8	Unmodified	_LSEVERIA_					0	0	0			REV__UTRN|p.T268S|1|0.22|ENSG00000152818|chr6:144429688-144429688|A/T|missense_variant	REV__UTRN|p.T268S|1|0.22|ENSG00000152818|chr6:144429688-144429688|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7582092285156	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.225	1	15.225	14.725	15.725	0								0	0	0	1.7419	1	3367	3367		60.972	0.85368	1		+		25508	22271	16966	17028	25853	25853					0.041414810348555875
LSEVIVKNL	9	Unmodified	_LSEVIVKNL_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1;TOPBP1|p.T861M|1|0.29|ENSG00000163781|chr3:133628672-133628672|G/A|missense_variant;ENST00000506779.1_1_3:133347204-133347562:-|nuORF	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.8777160644531	3	338.877975	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.867	1	24.867	24.367	25.367	0								0	0	0	0.35507	1	7404	7404		39.253	7.723	1				25509	5607	16967	17029	25854	25854					0.10583486654184071
LSEVVAAVKL	10	Unmodified	_LSEVVAAVKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.8214111328125	2	514.82115	1027.62775	1.3793	0.0007101	-0.64459	-0.00033185	0.73473	0.00037825	514.8209127962598	44.803	0.13474	44.803	44.732	44.867	0					11	8	2	0	0	0	0.71484	1	17398	17398		19.997	0.6368	1	42020	+		25510	16114	16968	17030	25855	25855					0.1150377317121638
LSFCASRA	8	Unmodified	_LSFCASRA_					0	0	0		ENSG00000170605|ENST00000641329|OR9K2;nc|ENSG00000170605|Q8NGE7|OR9K2	ENSG00000170605|ENST00000641329|OR9K2	ENSG00000170605|ENST00000641329|OR9K2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.711181640625	2	427.713088	853.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.491	1	35.491	34.991	35.991	0								0	0	0	1.7419	1	12648	12648		44.117	5.3107	1				25511	6248	16969	17031	25856	25856					-0.020946862142750433
LSFDARQVL	9	Unmodified	_LSFDARQVL_					0	0	0			REV__ENST00000263174.8_1_1:100111748-100111862:+|nuORF	REV__ENST00000263174.8_1_1:100111748-100111862:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7931518554688	2	524.792924	1047.57129	0.094523	4.9605E-05	0.49319	0.00025883	0.58772	0.00030843	524.7931861117526	35.724	0.38669	35.724	35.594	35.98	0					26	10	4	0	0	0	0.03984	1	13388	13388		99.375	10.732	1	1818600	+		25512	18040	16970	17032	25857	25857					0.049411453345555856
LSFDRILKK	9	Unmodified	_LSFDRILKK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.90118408203125	3	373.901003	1118.68118	0.79765	0.00029824	-0.74853	-0.00027988	0.049119	1.8366E-05	373.9007853037234	31.798	0.18058	31.798	31.707	31.887	0					9	4	3	0	0	0	0.54081	1	11602	11602		28.081	1.0342	1	191380			25513	5463	16971	17033	25858	25858					0.1265857067376146
LSFDRILKK	9	Unmodified	_LSFDRILKK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.9009704589844	3	373.901003	1118.68118	0.24747	9.253E-05	-0.17305	-6.4704E-05	0.07442	2.7826E-05	373.90086603731527	31.763	0.66126	31.763	31.267	31.928	0					20	14	2	0	0	0	0.5741	1	12002	12002		24.519	0.28737	1	124740			25514	5463	16971	17033	25859	25859					0.1265857067376146
LSFGGAVNVV	10	Unmodified	_LSFGGAVNVV_					0	0	0			REV__ENST00000583784.1_1_17:80006905-80007133:-|nuORF	REV__ENST00000583784.1_1_17:80006905-80007133:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7704162597656	2	481.768917	961.523281	0.54577	0.00026294	2.6878	0.0012949	3.2336	0.0015578	481.7701379994471	32.467	0.2529	32.467	32.342	32.595	0					11	6	2	0	0	0	0.24256	1	11915	11915		74.255	2.3776	1	329120	+		25515	16332	16972	17034	25860	25860					0.040980714145121055
LSFGRVPVT	9	Unmodified	_LSFGRVPVT_					0	0	0			REV__ENST00000423607.5_1_4:75023855-75040225:+|nuORF	REV__ENST00000423607.5_1_4:75023855-75040225:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2846374511719	2	488.284734	974.554916	2.5888	0.0012641	-3.1986	-0.0015618	-0.60981	-0.00029776	488.28308027737125	35.76	0.56359	35.76	35.603	36.166	0					19	11	3	0	0	0	0.4966	1	13821	13821		32.812	2.3088	1	1945300	+		25516	15914	16973	17035	25861	25861					0.06662064168460802
LSFHESLLEPA	11	Unmodified	_LSFHESLLEPA_					0	0	0			REV__ENST00000390341.2_1_7:38339806-38339917:-|nuORF	REV__ENST00000390341.2_1_7:38339806-38339917:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.8824157714844	3	414.883677	1241.6292	-2.3303	-0.00096681	-0.55256	-0.00022925	-2.8829	-0.0011961	414.8834471492381	13.284	0.25624	13.284	13.127	13.383	0					35	15	3	0	0	0	0.6208	1	2639	2639		35.178	1.2566	1	207470	+		25517	18809	16974	17036	25862	25862					0.0180536246932661
LSFHIMKL	8	Oxidation (M)	_LSFHIM(Oxidation (M))KL_		LSFHIM(1)KL		LSFHIM(61)KL	0	0	1			REV__WDPCP|p.G744S|1|0.34|ENSG00000143951|chr2:63122017-63122017|C/T|missense_variant	REV__WDPCP|p.G744S|1|0.34|ENSG00000143951|chr2:63122017-63122017|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7847595214844	2	502.783513	1003.55247	2.9273	0.0014718	-0.44234	-0.0002224	2.4849	0.0012494	502.7832274049365	27.433	0.27072	27.433	27.272	27.543	0					11	5	3	0	0	0	0.49216	1	9830	9830		60.972	18.576	1	767170	+		25518	22288	16975	17037	25863	25863		808			0.05083892439165538
LSFIAVGM	8	Unmodified	_LSFIAVGM_					0	0	0		nc|ENSG00000168275|Q5JTJ3|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.2315979003906	2	419.230582	836.446611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.102	1	18.102	17.602	18.602	0								0	0	0	1.7419	1	4456	4456		28.254	0	1				25519	11639	16976	17038	25864	25864					0.021845565936928324
LSFIGGEIKS	10	Unmodified	_LSFIGGEIKS_					0	0	0			REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF	REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.819091796875	2	525.795132	1049.57571	1.627	0.00085545	0.28415	0.0001494	1.9111	0.0010049	525.795103806145	25.84	0.50037	25.84	25.701	26.202	0					14	8	2	0	0	0	0.2538	1	9048	9048		72.879	0	1	1213400	+		25520	19727	16977	17039	25865	25865					0.05290609757457787
LSFKAKQT	8	Unmodified	_LSFKAKQT_					0	0	0			REV__ENSG00000111404|ENST00000538724|RERGL	REV__ENSG00000111404|ENST00000538724|RERGL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.7714538574219	2	461.77146	921.528367	-0.71605	-0.00033065	0.10412	4.8078E-05	-0.61193	-0.00028257	461.77163352694413	35.924	0.39304	35.924	35.818	36.211	0					24	10	3	0	0	0	0.66372	1	13488	13488		38.806	0	1	477910	+		25521	13968	16978	17040	25866	25866					0.064463752771303
LSFLISAKGR	10	Unmodified	_LSFLISAKGR_					0	0	0		ENST00000409891.5_1_2:175446079-175446118:-|nuORF	ENST00000409891.5_1_2:175446079-175446118:-|nuORF	ENST00000409891.5_1_2:175446079-175446118:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3331909179688	2	546.332216	1090.64988	0.42816	0.00023392	0.86635	0.00047332	1.2945	0.00070723	546.332760551283	33.067	0.2505	33.067	32.969	33.22	0					14	7	3	0	0	0	0.28855	1	12183	12183		47.96	1.9873	1	278820			25522	9305	16979	17041	25867	25867					0.10817997639651367
LSFLKNKQ	8	Unmodified	_LSFLKNKQ_					0	0	0		ENSG00000125351|ENST00000276201|UPF3B;nc|ENSG00000125351|Q9BZI7-2|UPF3B;ENST00000478840.1_1_X:118974578-118977244:-|nuORF	ENSG00000125351|ENST00000276201|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.5307922363281	3	326.530798	976.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.641	1	21.641	21.141	22.141	0								0	0	0	1.7419	1	7078	7078		44.117	0	1				25523	3410	16980	17042	25868	25868					0.08134350685509162
LSFLLASLL	9	Unmodified	_LSFLLASLL_					0	0	0			REV__nc|ENSG00000188517|Q9BXS0-2|COL25A1	REV__nc|ENSG00000188517|Q9BXS0-2|COL25A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.8045654296875	2	488.807511	975.600469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.319	1	18.319	17.819	18.819	0								0	0	0	0.13522	1	4764	4764		63.306	2.3343	1		+		25524	21167	16981	17043	25869	25869					0.11169289630845469
LSFLRGEKFLS	11	Unmodified	_LSFLRGEKFLS_					0	0	0		PRMT2|p.I57Ffs*4|1|0.47|ENSG00000160310|chr21:46644325-46644325|A/-|frameshift_variant	PRMT2|p.I57Ffs*4|1|0.47|ENSG00000160310|chr21:46644325-46644325|A/-|frameshift_variant	PRMT2|p.I57Ffs*4|1|0.47|ENSG00000160310|chr21:46644325-46644325|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.24798583984375	3	432.915201	1295.72377	-0.76035	-0.00032917	-2.221	-0.00096152	-2.9814	-0.0012907	433.2483143609609	22.508	0.13455	22.508	22.47	22.604	0					6	4	2	0	0	0	0.73562	1	6644	6644		24.232	1.6702	1	153960			25525	11975	16982	17044	25870	25870					0.08773921011311359
LSFNAKMELL	10	Unmodified	_LSFNAKMELL_					0	0	0			REV__HNRNPUL2|p.M589L|1|0.22|ENSG00000214753|chr11:62720038-62720038|T/G|missense_variant	REV__HNRNPUL2|p.M589L|1|0.22|ENSG00000214753|chr11:62720038-62720038|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	389.5498046875	3	389.21437	1164.62128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.994	1	18.994	18.494	19.494	0								0	0	0	0.38475	1	4830	4830		35.152	0	1		+		25526	20751	16983	17045	25871	25871					0.045555119482060036
LSFNGNLCLP	10	Unmodified	_LSFNGNLCLP_					0	0	0			REV__ENSG00000171532|ENST00000302584|NEUROD2	REV__ENSG00000171532|ENST00000302584|NEUROD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2750854492188	2	539.273509	1076.53247	1.9827	0.0010692	-2.4641	-0.0013288	-0.48144	-0.00025963	539.2732404230192	35.904	0.54439	35.904	35.751	36.295	0					32	14	3	0	0	0	0.39566	1	13583	13583		56.721	12.344	1	123790	+		25527	16418	16984	17046	25872	25872					-0.002739032914632844
LSFQGFLPQ	9	Unmodified	_LSFQGFLPQ_					0	0	0		ENST00000308377.8_1_17:33679129-33679345:-|nuORF	ENST00000308377.8_1_17:33679129-33679345:-|nuORF	ENST00000308377.8_1_17:33679129-33679345:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2769775390625	2	518.776742	1035.53893	0.96263	0.00049939	-4.299	-0.0022302	-3.3364	-0.0017308	518.7742202915118	21.921	0.27909	21.921	21.806	22.085	0					12	6	3	0	0	0	0.4966	1	6491	6491		32.812	1.2826	1	118570			25528	8532	16985	17047	25873	25873					0.022583579315551106
LSFSITNPLGN	11	Unmodified	_LSFSITNPLGN_					0	0	0			REV__RGL1|p.L272Ffs*55|1|0.05|ENSG00000143344|chr1:183884802-183884803|-/CATATGGCAAA|frameshift_variant	REV__RGL1|p.L272Ffs*55|1|0.05|ENSG00000143344|chr1:183884802-183884803|-/CATATGGCAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.2083740234375	3	388.208273	1161.60299	-0.046379	-1.8005E-05	0.050833	1.9734E-05	0.0044538	1.729E-06	388.2082519986278	23.482	0.66717	23.482	23.294	23.961	0					38	15	4	0	0	0	0.50799	1	7771	7771		43.651	1.3127	1	1327900	+		25529	15182	16986	17048	25874	25874					0.028650932978280252
LSFSITNPLGN	11	Unmodified	_LSFSITNPLGN_					0	0	0			REV__RGL1|p.L272Ffs*55|1|0.05|ENSG00000143344|chr1:183884802-183884803|-/CATATGGCAAA|frameshift_variant	REV__RGL1|p.L272Ffs*55|1|0.05|ENSG00000143344|chr1:183884802-183884803|-/CATATGGCAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.20819091796875	3	388.208273	1161.60299	0.4408	0.00017112	-0.54012	-0.00020968	-0.099326	-3.8559E-05	388.2080891494785	23.474	0.36536	23.474	23.229	23.595	0					16	7	3	0	0	0	0.67983	1	8086	8086		29.551	6.1728	1	357980	+		25530	15182	16986	17048	25875	25875					0.028650932978280252
LSFSLRFPSPS	11	Unmodified	_LSFSLRFPSPS_					0	0	0		ENST00000411419.6_1_10:126799584-126849578:-|nuORF	ENST00000411419.6_1_10:126799584-126849578:-|nuORF	ENST00000411419.6_1_10:126799584-126849578:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.2239990234375	3	413.224034	1236.65027	2.8717	0.0011867	-2.1374	-0.00088322	0.73434	0.00030345	413.2234540855965	35.236	0.62131	35.236	34.947	35.568	0					33	12	4	0	0	0	0.74306	1	13559	13559		26.75	10.743	1	791810			25531	9309	16987	17049	25876	25876					0.04141372568847146
LSFSPLPGNI	10	Unmodified	_LSFSPLPGNI_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ENST00000530999.1_1_1:32193023-32200902:-|nuORF;ENST00000465256.5_1_1:32193589-32201220:-|nuORF	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7901000976562	2	522.78985	1043.56515	-0.042842	-2.2397E-05	0.12198	6.3773E-05	0.079143	4.1375E-05	522.7900443171781	33.946	0.28304	33.946	33.851	34.134	0					10	6	3	0	0	0	0.2978	1	13045	13045		67.494	11.989	1	319900			25532	3233	16988	17050	25877	25877					0.04510627103036313
LSFSVSAQK	9	Unmodified	_LSFSVSAQK_					0	0	0		nc|ENSG00000162739|Q96DU3-3|SLAMF6;nc|ENSG00000162739|Q96DU3-2|SLAMF6;ENSG00000162739|ENST00000368057|SLAMF6	nc|ENSG00000162739|Q96DU3-3|SLAMF6	nc|ENSG00000162739|Q96DU3-3|SLAMF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.8466491699219	3	322.846675	965.518196	0.53535	0.00017284	-0.59682	-0.00019268	-0.061476	-1.9847E-05	322.846464172952	22.841	0.21326	22.841	22.756	22.969	0					12	5	4	0	0	0	0.47038	1	7489	7489		42.864	1.4377	1	693110			25533	5495	16989	17051	25878	25878					0.03405767551907957
LSFTEVSRL	9	Unmodified	_LSFTEVSRL_					0	0	0			REV__ENST00000540675.5_2_18:61442852-61442879:+|nuORF	REV__ENST00000540675.5_2_18:61442852-61442879:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7844848632812	2	526.292756	1050.57096	1.7658	0.00092935	-3.3073	-0.0017406	-1.5415	-0.00081125	526.2901312674353	19.171	0.60838	19.171	19.017	19.625	0					18	9	3	0	0	0	0.30841	1	6028	6028		26.693	4.733	1	3335900	+		25534	20132	16990	17052	25879	25879					0.04769725614710296
LSGAANFTTRK	11	Unmodified	_LSGAANFTTRK_					0	0	0			REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.3199462890625	2	583.319837	1164.62512	-0.29919	-0.00017452	0.5211	0.00030397	0.22191	0.00012944	583.3200439671563	19.206	0.2154	19.206	19.148	19.363	0					6	4	2	0	0	0	0.6208	1	6044	6044		13.454	0	1	243530	+		25535	21567	16991	17053	25880	25880					0.04939317766252316
LSGAASWEH	9	Unmodified	_LSGAASWEH_					0	0	0		ENST00000578846.5_1_17:80019305-80021015:-|nuORF;ENST00000578264.1_1_17:80019305-80022125:-|nuORF;ENSG00000169718|ENST00000306796|DUS1L	ENST00000578846.5_1_17:80019305-80021015:-|nuORF	ENST00000578846.5_1_17:80019305-80021015:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2245788574219	2	479.224874	956.435195	-1.4257	-0.00068325	0.69181	0.00033153	-0.73392	-0.00035171	479.2252607311135	20.329	0.081692	20.329	20.291	20.372	0					4	2	2	0	0	0	0.20551	1	5662	5662		60.972	3.1607	1	184270			25536	6180	16992	17054	25881	25881					-0.04476549176104072
LSGAHAQK	8	Unmodified	_LSGAHAQK_					0	0	0		PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant	PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.2251892089844	2	406.224677	810.434801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.301	1	20.301	19.801	20.801	0								0	0	0	1.7419	1	5683	5683		38.806	1.647	1				25537	2832	16993	17055	25882	25882					0.022000758947001486
LSGALLICG	9	Carbamidomethyl (C)	_LSGALLIC(Carbamidomethyl (C))G_	LSGALLIC(1)G		LSGALLIC(68)G		0	1	0			REV__ENSG00000198569|ENST00000673835|SLC34A3	REV__ENSG00000198569|ENST00000673835|SLC34A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2536926269531	2	452.252046	902.489538	-0.11402	-5.1568E-05	1.8017	0.00081481	1.6876	0.00076324	452.25296020571966	31.58	0.49091	31.58	31.438	31.928	0					19	10	2	0	0	0	0.14734	1	11909	11909		68.485	10.673	1	218960	+		25538	17406	16994	17056	25883	25883	618				0.034393266511074216
LSGALQPAPGA	11	Unmodified	_LSGALQPAPGA_					0	0	0		ENST00000494893.5_1_2:27594167-27597059:+|nuORF	ENST00000494893.5_1_2:27594167-27597059:+|nuORF	ENST00000494893.5_1_2:27594167-27597059:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2716064453125	2	491.271824	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.766	1	29.766	29.266	30.266	0								0	0	0	0.36657	1	9719	9719		42.864	5.7052	1				25539	10103	16995	17057	25884	25884					0.03805169926170038
LSGAPRETP	9	Unmodified	_LSGAPRETP_					0	0	0		ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2495422363281	2	464.248349	926.482145	0.58075	0.00026961	3.2016	0.0014863	3.7823	0.0017559	464.24959229893375	35.534	0.30652	35.534	35.416	35.722	0					13	8	2	0	0	0	0.44593	1	13329	13329		37.812	0.65241	1	179310			25540	4716	16996	17058	25885	25885					0.01596310375032317
LSGAQTAVTT	10	Unmodified	_LSGAQTAVTT_					0	0	0			REV__ENSG00000136931|ENST00000373588|NR5A1	REV__ENSG00000136931|ENST00000373588|NR5A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.75360107421875	2	474.753464	947.492375	-0.44609	-0.00021178	-0.23733	-0.00011267	-0.68342	-0.00032445	474.75351747944035	16.008	0.11256	16.008	15.97	16.082	0					5	3	2	0	0	0	0.26198	1	3703	3703		71.877	4.3838	1	83854	+		25541	14893	16997	17059	25886	25886					0.016528733096038195
LSGARWRA	8	Unmodified	_LSGARWRA_					0	0	0		ENST00000374379.8_1_1:25169437-25169536:+|nuORF	ENST00000374379.8_1_1:25169437-25169536:+|nuORF	ENST00000374379.8_1_1:25169437-25169536:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7584228515625	2	458.759218	915.503883	-0.44205	-0.00020279	-2.8154	-0.0012916	-3.2575	-0.0014944	458.7584187111594	15.372	0.24934	15.372	15.263	15.513	0					8	5	2	0	0	0	0.59411	1	4048	4048		50.025	2.3672	1	208880			25542	9011	16998	17060	25887	25887					0.04275159914266169
LSGATSGSGEY	11	Unmodified	_LSGATSGSGEY_					0	0	0			REV__nc|ENSG00000170558|P19022-2|CDH2	REV__nc|ENSG00000170558|P19022-2|CDH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7308959960938	2	514.730186	1027.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.867	1	41.867	41.367	42.367	0								0	0	0	0.34425	1	16456	16456		45.972	8.1607	1		+		25543	16366	16999	17061	25888	25888					-0.06680611312322071
LSGDAEVKP	9	Unmodified	_LSGDAEVKP_					0	0	0			REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2429504394531	2	458.242732	914.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.44	1	33.44	32.94	33.94	0								0	0	0	0.10826	1	11735	11735		69.628	3.1983	1		+		25544	12119	17000	17062	25889	25889					0.010254882809022092
LSGDALLHLI	10	Unmodified	_LSGDALLHLI_					0	0	0		nc|ENSG00000148482|Q504Y0-5|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12	nc|ENSG00000148482|Q504Y0-5|SLC39A12	nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.3112182617188	2	526.310949	1050.60735	2.0018	0.0010536	-1.1953	-0.00062912	0.80644	0.00042444	526.310277076647	37.915	0.2658	37.915	37.79	38.056	0					26	11	3	0	0	0	0.52707	1	14400	14400		42.396	0	1	228140			25545	4835	17001	17063	25890	25890					0.08406602511445271
LSGDLIRRQG	10	Unmodified	_LSGDLIRRQG_					0	0	0			REV__ENST00000581005.1_1_17:71069947-71084903:-|nuORF	REV__ENST00000581005.1_1_17:71069947-71084903:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.21575927734375	3	372.215761	1113.62546	0.89523	0.00033322	-0.98652	-0.0003672	-0.091294	-3.3981E-05	372.21544651195296	16.072	0.11586	16.072	16.013	16.128	0					6	2	3	0	0	0	0.536	1	4536	4536		41.427	3.6151	1	711120	+		25546	14699	17002	17064	25891	25891					0.07318737486116333
LSGDRVRLD	9	Unmodified	_LSGDRVRLD_					0	0	0		KRT73|p.T196M|1|0.17|ENSG00000186049|chr12:52616241-52616241|G/A|missense_variant;KRT71|p.T194M|1|0.31|ENSG00000139648|chr12:52550104-52550104|G/A|missense_variant;nc|ENSG00000186049|Q86Y46-2|KRT73;CON__Q6IME9;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;CON__Q9R0H5;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q6NXH9;ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2	KRT73|p.T196M|1|0.17|ENSG00000186049|chr12:52616241-52616241|G/A|missense_variant	KRT73|p.T196M|1|0.17|ENSG00000186049|chr12:52616241-52616241|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7861938476562	2	515.78563	1029.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.211	1	24.211	23.711	24.711	0								0	0	0	0.31222	1	7514	7514		13.454	0	1			+	25547	657	17003	17065	25892	25892					0.04311073186431713
LSGEIWPEL	9	Unmodified	_LSGEIWPEL_					0	0	0			REV__ENST00000328916.7_1_12:7167858-7168176:+|nuORF	REV__ENST00000328916.7_1_12:7167858-7168176:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2743530273438	2	522.274032	1042.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.527	1	32.527	32.027	33.027	0								0	0	0	0.19749	1	12273	12273		51.335	0.14276	1		+		25548	18370	17004	17066	25893	25893					0.013946343490943036
LSGEMVRK	8	Oxidation (M)	_LSGEM(Oxidation (M))VRK_		LSGEM(1)VRK		LSGEM(42)VRK	0	0	1		nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;NDUFS2|p.D110N|1|0.27|ENSG00000158864|chr1:161206532-161206532|G/A|missense_variant;ENST00000478866.5_1_1:161172175-161179984:+|nuORF;NDUFS2|p.I275Sfs*5|1|0.02|ENSG00000158864|chr1:161210346-161210347|-/GC|frameshift_variant;NDUFS2|p.I275Sfs*12|2|0.03|ENSG00000158864|chr1:161210345-161210346|-/TCCT|frameshift_variant	nc|ENSG00000158864|O75306-2|NDUFS2	nc|ENSG00000158864|O75306-2|NDUFS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2542724609375	2	468.252577	934.490601	2.6175	0.0012256	0.53737	0.00025163	3.1548	0.0014773	468.252854037423	39.198	0.32623	39.198	39.049	39.376	0					14	7	3	0	0	0	0.64144	1	15481	15481		42.396	42.396	1	164760			25549	5288	17005	17067	25894	25894		215			0.020735410200359183
LSGEPGVRR	9	Unmodified	_LSGEPGVRR_					0	0	0		ENST00000430857.5_1_7:100136843-100136927:+|nuORF	ENST00000430857.5_1_7:100136843-100136927:+|nuORF	ENST00000430857.5_1_7:100136843-100136927:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.77484130859375	2	485.775065	969.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.128	1	19.128	18.628	19.628	0								0	0	0	0.37233	1	5716	5716		7.1934	0	1				25550	9496	17006	17068	25895	25895					0.04959107877573388
LSGESDVNKL	10	Unmodified	_LSGESDVNKL_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1;REV__PLEKHH1|p.P545Rfs*42|1|0.62|ENSG00000054690|chr14:67572178-67572178|C/-|frameshift_variant	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2776489257812	2	531.277303	1060.54005	1.6855	0.00089545	-1.2414	-0.00065951	0.4441	0.00023594	531.2766828029481	21.935	0.26628	21.935	21.721	21.988	0					6	5	2	0	0	0	0.27065	1	7231	7231		70.816	1.9701	1	609190	+		25551	13049;21388	17007	17069	25896	25896					0.012205275098040147
LSGFGLGAAV	10	Unmodified	_LSGFGLGAAV_					0	0	0			REV__ENST00000442035.5_1_X:47053355-47057738:+|nuORF	REV__ENST00000442035.5_1_X:47053355-47057738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.25030517578125	2	446.25036	890.486168	-0.297	-0.00013253	-0.1255	-5.6004E-05	-0.42249	-0.00018854	446.25030504085487	17.985	0.4901	17.985	17.579	18.069	0					21	13	2	0	0	0	0.54387	1	4292	4292		40.573	0	1	148760	+		25552	19246	17008	17070	25897	25897					0.03654399868753444
LSGFLRLA	8	Unmodified	_LSGFLRLA_					0	0	0		ENST00000409863.5_1_7:24870486-24873964:-|nuORF	ENST00000409863.5_1_7:24870486-24873964:-|nuORF	ENST00000409863.5_1_7:24870486-24873964:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.76788330078125	2	438.76872	875.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.785	1	37.785	37.285	38.285	0								0	0	0	1.7419	1	13522	13522		30.504	0	1				25553	9303	17009	17071	25898	25898					0.08014696485327022
LSGFVALFH	9	Unmodified	_LSGFVALFH_					0	0	0		ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2744445800781	2	495.774003	989.533452	0.73375	0.00036377	-1.5965	-0.0007915	-0.86275	-0.00042773	495.77334008886186	22.266	0.45541	22.266	22.119	22.575	0					19	10	3	0	0	0	0.39123	1	7260	7260		42.474	5.3154	1	1147600			25554	2668	17010	17072	25899	25899					0.038266791397632005
LSGGCESCKSP	11	Unmodified	_LSGGCESCKSP_					0	0	0		ENST00000576840.5_1_17:7130280-7131353:-|nuORF	ENST00000576840.5_1_17:7130280-7131353:-|nuORF	ENST00000576840.5_1_17:7130280-7131353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2294311523438	2	534.228442	1066.44233	-0.5329	-0.00028469	1.006	0.00053744	0.47311	0.00025275	534.2292035561853	18.628	0.15346	18.628	18.559	18.713	0					13	5	3	0	0	0	0.42746	1	4895	4895		49.536	1.8787	1	922070			25555	10832	17011	17073	25900	25900					-0.08823320682176927
LSGGNWDSI	9	Unmodified	_LSGGNWDSI_					0	0	0		ENSG00000071242|ENST00000265678|RPS6KA2;ENST00000509742.1_1_6:166826252-166837415:-|nuORF;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2	ENSG00000071242|ENST00000265678|RPS6KA2	ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7245178222656	2	474.724707	947.43486	-0.12043	-5.7171E-05	-0.35852	-0.0001702	-0.47895	-0.00022737	474.72453905486697	29.574	0.30506	29.574	29.429	29.734	0					13	6	3	0	0	0	0.03984	1	10955	10955		99.375	5.3685	1	806050			25556	1471	17012	17074	25901	25901					-0.04095968895956048
LSGGSKLQIA	10	Unmodified	_LSGGSKLQIA_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2900085449219	2	487.287474	972.560395	-1.2442	-0.00060627	3.3991	0.0016563	2.1549	0.0010501	487.2890333943712	35.554	0.20447	35.554	35.418	35.622	0					15	10	2	0	0	0	0.39566	1	11998	11998		56.721	1.2168	1	97761			25557	4539	17013	17075	25902	25902					0.07301742960282809
LSGGTLDKP	9	Unmodified	_LSGGTLDKP_					0	0	0			REV__SALL4|p.N742*|1|0.36|ENSG00000101115|chr20:51790263-51790264|-/G|frameshift_variant	REV__SALL4|p.N742*|1|0.36|ENSG00000101115|chr20:51790263-51790264|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2451171875	2	444.245275	886.475997	0.78159	0.00034722	-1.0133	-0.00045015	-0.23169	-0.00010293	444.24482312834834	21.182	0.51073	21.182	20.828	21.338	0					24	10	3	0	0	0	0.51991	1	6795	6795		30.318	1.1682	1	1409400	+		25558	13586	17014	17076	25903	25903					0.02821792143527091
LSGHAIEAEL	10	Unmodified	_LSGHAIEAEL_					0	0	0			REV__ENSG00000196976|ENST00000357360|LAGE3	REV__ENSG00000196976|ENST00000357360|LAGE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2745361328125	2	520.274564	1038.53457	1.426	0.00074193	-1.2278	-0.00063878	0.19826	0.00010315	520.2738949352342	36.136	0.20034	36.136	36.057	36.257	0					8	5	2	0	0	0	0.55603	1	13600	13600		39.253	1.4413	1	154330	+		25559	17299	17015	17077	25904	25904					0.016848487179913718
LSGHLELVN	9	Unmodified	_LSGHLELVN_					0	0	0			REV__tr|U7SRN0|U7SRN0_FUSNUNAD-dependentproteindeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobBPE=3SV=1	REV__tr|U7SRN0|U7SRN0_FUSNUNAD-dependentproteindeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.271728515625	2	491.271824	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.023	1	30.023	29.523	30.523	0								0	0	0	0.15451	1	10782	10782		58.782	2.0609	1		+		25560	21856	17016	17078	25905	25905					0.03805169926170038
LSGILAAINT	10	Unmodified	_LSGILAAINT_					0	0	0			REV__ABCA12|p.T1534Nfs*8|1|0.1|ENSG00000144452|chr2:214980622-214980623|-/T|frameshift_variant	REV__ABCA12|p.T1534Nfs*8|1|0.1|ENSG00000144452|chr2:214980622-214980623|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7884521484375	2	486.78985	971.565146	0.70426	0.00034283	-2.5286	-0.0012309	-1.8244	-0.00088808	486.7890143779361	39.677	0.10237	39.677	39.608	39.71	0					6	4	2	0	0	0	0.63224	1	15110	15110		30.318	0	1	35313	+		25561	12023	17017	17079	25906	25906					0.07822627103041668
LSGKMTWL	8	Unmodified	_LSGKMTWL_					0	0	0			REV__ENST00000274364.10_1_5:75699116-75757478:+|nuORF	REV__ENST00000274364.10_1_5:75699116-75757478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2541198730469	2	468.254588	934.494624	-0.64438	-0.00030174	-0.42374	-0.00019842	-1.0681	-0.00050015	468.25433538541745	39.277	0.19091	39.277	39.151	39.342	0					9	6	2	0	0	0	0.67394	1	14940	14940		37.159	1.5408	1	91710	+		25562	18113	17018	17080	25907	25907					0.02475630513742999
LSGKSKSG	8	Unmodified	_LSGKSKSG_					0	0	0		RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant;nc|ENSG00000159788|O14924-5|RGS12;RGS12|p.K1178Nfs*32|1|0.71|ENSG00000159788|chr4:3428672-3428672|A/-|frameshift_variant;RGS12|p.Q1292Rfs*49|1|0.23|ENSG00000159788|chr4:3430704-3430704|C/-|frameshift_variant;nc|ENSG00000159788|O14924-4|RGS12;RGS12|p.Q1363Rfs*30|1|0.3|ENSG00000159788|chr4:3430923-3430923|C/-|frameshift_variant;ENSG00000159788|ENST00000336727|RGS12;ENST00000506998.5_1_4:3371967-3419414:+|nuORF;nc|ENSG00000159788|O14924-7|RGS12;nc|ENSG00000159788|O14924-6|RGS12;ENST00000508158.5_1_4:3386893-3430067:+|nuORF;nc|ENSG00000159788|O14924-2|RGS12;nc|ENSG00000159788|O14924-3|RGS12	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.22003173828125	2	382.21906	762.423567	0.40493	0.00015477	1.6044	0.00061325	2.0094	0.00076802	382.2196363451189	48.266	0.26119	48.266	48.146	48.407	0					20	15	2	0	0	0	0.79567	1	18298	18298		17.365	17.365	1	85838			25563	5331	17019	17081	25908	25908					0.03285253800584087
LSGLNEKGQL	10	Unmodified	_LSGLNEKGQL_					0	0	0			REV__ENST00000375151.4_1_X:54471110-54471305:+|nuORF	REV__ENST00000375151.4_1_X:54471110-54471305:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7955932617188	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.855	1	33.855	33.355	34.355	0								0	0	0	0.3598	1	12995	12995		41.427	0	1		+		25564	18704	17020	17082	25909	25909					0.05028824126384279
LSGLTNHTY	9	Unmodified	_LSGLTNHTY_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2531433105469	2	503.253631	1004.49271	-0.87696	-0.00044133	-0.38683	-0.00019467	-1.2638	-0.000636	503.2533247239866	22.379	0.21733	22.379	22.261	22.479	0					11	6	3	0	0	0	0.30951	1	6577	6577		49.442	7.0454	1	121470	+		25565	17446	17021	17083	25910	25910					-0.009357069705401955
LSGMQISGAVA	11	Unmodified	_LSGMQISGAVA_					0	0	0		SEC24C|p.P216Qfs*11|1|0.45|ENSG00000176986|chr10:73760179-73760179|C/-|frameshift_variant;ENSG00000176986|ENST00000345254|SEC24C	SEC24C|p.P216Qfs*11|1|0.45|ENSG00000176986|chr10:73760179-73760179|C/-|frameshift_variant	SEC24C|p.P216Qfs*11|1|0.45|ENSG00000176986|chr10:73760179-73760179|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2711791992188	2	517.270967	1032.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.006	1	16.006	15.506	16.506	0								0	0	0	0.19891	1	4251	4251		63.534	3.6031	1				25566	6639	17022	17084	25911	25911					0.012417928459399263
LSGNEYVFT	9	Unmodified	_LSGNEYVFT_					0	0	0		nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;ENSG00000113231|ENST00000264917|PDE8B;nc|ENSG00000284762|O95263-2|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2490234375	2	515.248015	1028.48148	1.0823	0.00055765	2.0737	0.0010685	3.156	0.0016261	515.2490192634676	28.745	0.094975	28.745	28.685	28.78	0					4	2	2	0	0	0	0.50858	1	9585	9585		31.53	1.0262	1	45736			25567	2787	17023	17085	25912	25912					-0.03162529064661612
LSGPAIKPVA	10	Unmodified	_LSGPAIKPVA_					0	0	0		tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7947082519531	2	476.794935	951.575317	-0.63292	-0.00030177	0.13035	6.2153E-05	-0.50256	-0.00023962	476.7949582615602	33.056	0.44589	33.056	32.721	33.167	0					20	9	3	0	0	0	0.44469	1	12453	12453		51.335	5.3835	1	372280			25568	22868	17024	17086	25913	25913					0.09759234828277386
LSGPNLPN	8	Unmodified	_LSGPNLPN_					0	0	0		ENST00000314888.9_1_9:35697593-35697719:-|nuORF	ENST00000314888.9_1_9:35697593-35697719:-|nuORF	ENST00000314888.9_1_9:35697593-35697719:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.2187805175781	2	406.21906	810.423567	0.14045	5.7053E-05	-2.4022	-0.00097581	-2.2617	-0.00091876	406.218730656394	24.102	0.29912	24.102	23.811	24.11	0					9	7	2	0	0	0	0.66372	1	7451	7451		38.806	1.647	1	111570			25569	8577	17025	17087	25914	25914					0.010772538005653587
LSGPRLLFK	9	Unmodified	_LSGPRLLFK_					0	0	0		ENSG00000189266|ENST00000334351|PNRC2;nc|ENSG00000189266|Q9NPJ4-2|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8237915039062	2	515.824027	1029.6335	0.1695	8.7433E-05	-0.33808	-0.00017439	-0.16858	-8.6959E-05	515.8238071876389	35.39	0.27066	35.39	35.179	35.449	0					9	5	2	0	0	0	0.37744	1	13649	13649		29.17	4.6509	1	90734			25570	7313	17026	17088	25915	25915					0.11986916473574638
LSGPSAEAL	9	Unmodified	_LSGPSAEAL_					0	0	0			REV__ENST00000517549.1_1_8:134050771-134052457:-|nuORF	REV__ENST00000517549.1_1_8:134050771-134052457:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7239685058594	2	422.724175	843.433798	-0.21088	-8.9146E-05	0.34261	0.00014483	0.13172	5.5682E-05	422.7242321400871	40.707	0.2682	40.707	40.501	40.769	0					16	11	2	0	0	0	0.18605	1	16031	16031		63.306	0	1	82352	+		25571	19919	17027	17089	25916	25916					0.005818167351435477
LSGPVPAPVPL	11	Unmodified	_LSGPVPAPVPL_					0	0	0		ENST00000174618.4_1_17:2289655-2289982:-|nuORF	ENST00000174618.4_1_17:2289655-2289982:-|nuORF	ENST00000174618.4_1_17:2289655-2289982:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.87969970703125	3	349.546337	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.021	1	13.021	12.521	13.521	0								0	0	0	0.43551	1	2585	2585		38.754	3.6016	1				25572	8147	17028	17090	25917	25917					0.0961979051680828
LSGRQSPSFK	10	Unmodified	_LSGRQSPSFK_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.5365295410156	3	369.536612	1105.58801	0.76885	0.00028412	-0.927	-0.00034256	-0.15815	-5.8444E-05	369.5362285887262	27.212	0.30398	27.212	27.086	27.39	0					12	7	2	0	0	0	0.58896	1	9490	9490		40.058	8.4239	1	440470			25573	2063	17029	17091	25918	25918					0.03943646220523078
LSGSLDGKL	9	Unmodified	_LSGSLDGKL_					0	0	0		nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-3|WDR44;WDR44|p.R673C|1|0.31|ENSG00000131725|chrX:118441410-118441410|C/T|missense_variant	nc|ENSG00000131725|Q5JSH3-2|WDR44	nc|ENSG00000131725|Q5JSH3-2|WDR44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2530212402344	2	445.2531	888.491647	-1.1635	-0.00051805	0.634	0.00028229	-0.52949	-0.00023576	445.25342198570615	22.469	0.18556	22.469	22.326	22.511	0					11	5	3	0	0	0	0.1424	1	6615	6615		69.628	7.5202	1	240170			25574	3735	17030	17092	25919	25919					0.04294078660575451
LSGSNAGITSI	11	Unmodified	_LSGSNAGITSI_					0	0	0		ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF;ENST00000472242.1_1_2:234186198-234191411:+|nuORF;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;ENSG00000085978|ENST00000392017|ATG16L1	ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2720642089844	2	510.272021	1018.52949	-0.42042	-0.00021453	0.89218	0.00045526	0.47176	0.00024073	510.2723825573654	27.246	0.21997	27.246	27.135	27.355	0					9	4	3	0	0	0	0.3077	1	9861	9861		61.765	0	1	252560			25575	248;1739	17031	17093	25920	25920					0.020965448553852184
LSGSRPVS	8	Unmodified	_LSGSRPVS_					0	0	0		ENST00000341460.5_1_1:85643893-85647787:-|nuORF	ENST00000341460.5_1_1:85643893-85647787:-|nuORF	ENST00000341460.5_1_1:85643893-85647787:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.7245178222656	2	401.72451	801.434466	0.50817	0.00020415	-4.0497	-0.0016269	-3.5415	-0.0014227	401.72340400887816	19.594	0.26499	19.594	19.425	19.69	0					9	5	2	0	0	0	0.70598	1	6118	6118		32.812	2.3088	1	609670			25576	8735	17032	17094	25921	25921					0.025806561748595414
LSGSTDVEF	9	Unmodified	_LSGSTDVEF_					0	0	0			REV__ENST00000216297.6_1_14:21852141-21852234:-|nuORF	REV__ENST00000216297.6_1_14:21852141-21852234:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7222900390625	2	477.724372	953.434192	-2.8651	-0.0013687	-1.2397	-0.00059223	-4.1048	-0.001961	477.7240076461345	18.712	0.16551	18.712	18.638	18.803	0					10	4	3	0	0	0	0.26904	1	4925	4925		53.351	9.2347	1	371730	+		25577	17880	17033	17095	25922	25922					-0.04438808335646627
LSGTKGAL	8	Unmodified	_LSGTKGAL_					0	0	0		nc|ENSG00000049883|Q8WV60-3|PTCD2	nc|ENSG00000049883|Q8WV60-3|PTCD2	nc|ENSG00000049883|Q8WV60-3|PTCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.7243957519531	2	373.723978	745.433404	0.79869	0.00029849	0.20754	7.7563E-05	1.0062	0.00037605	373.7240029329406	20.511	0.10373	20.511	20.447	20.551	0					4	2	2	0	0	0	0.51384	1	6381	6381		58.782	0	1	54397			25578	11424	17034	17096	25923	25923					0.050504418059517775
LSGTVAALLAG	11	Unmodified	_LSGTVAALLAG_					0	0	0		ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant;ANKRD50|p.G1144Wfs*12|1|0.39|ENSG00000151458|chr4:124669847-124669848|-/A|frameshift_variant;ANKRD50|p.P1235Hfs*8|2|0.36|ENSG00000151458|chr4:124669573-124669573|G/-|frameshift_variant;ENSG00000151458|ENST00000504087|ANKRD50;nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant	ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.78955078125	2	486.78985	971.565146	0.40942	0.0001993	-1.2551	-0.00061098	-0.84571	-0.00041168	486.7891951033342	31.411	0.10648	31.411	31.356	31.463	0					4	2	2	0	0	0	0.31478	1	10823	10823		60.972	4.5381	1	87623			25579	161	17035	17097	25924	25924					0.07822627103041668
LSGTVVKQG	9	Unmodified	_LSGTVVKQG_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7608947753906	2	444.761092	887.507631	-0.47084	-0.00020941	0.10789	4.7987E-05	-0.36294	-0.00016142	444.76113087238724	20.202	0.1657	20.202	20.094	20.26	0					7	3	3	0	0	0	0.37197	1	6389	6389		44.117	1.7207	1	384580			25580	2040	17036	17098	25925	25925					0.05937784897480469
LSGVFSEGR	9	Unmodified	_LSGVFSEGR_					0	0	0		ENST00000586544.1_1_19:10798526-10798769:+|nuORF	ENST00000586544.1_1_19:10798526-10798769:+|nuORF	ENST00000586544.1_1_19:10798526-10798769:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.242919921875	2	476.248349	950.482145	-0.3834	-0.0001826	-2.3996	-0.0011428	-2.783	-0.0013254	476.24680980607263	26.272	0.88911	26.272	25.692	26.581	0					31	19	3	0	0	0	0.087861	1	8997	8997		82.241	7.9855	1	698130			25581	10903	17037	17099	25926	25926					0.00492310375057059
LSGVGGEAVK	10	Unmodified	_LSGVGGEAVK_					0	0	0		ENST00000493434.1_1_17:16338039-16340200:+|nuORF	ENST00000493434.1_1_17:16338039-16340200:+|nuORF	ENST00000493434.1_1_17:16338039-16340200:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7586364746094	2	458.758549	915.502546	0.88018	0.00040379	-1.5676	-0.00071917	-0.68746	-0.00031538	458.75793539649294	21.378	0.96809	21.378	21.222	22.19	0					48	19	5	0	0	0	0.31613	1	7183	7183		65.465	5.3471	1	29983000			25582	10090	17038	17100	25927	25927					0.041414810348555875
LSGVGTLLSL	10	Unmodified	_LSGVGTLLSL_					0	0	0		ENST00000240922.7_1_3:113440072-113440111:-|nuORF	ENST00000240922.7_1_3:113440072-113440111:-|nuORF	ENST00000240922.7_1_3:113440072-113440111:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2949523925781	2	480.292225	958.569897	0.50345	0.0002418	0.57704	0.00027715	1.0805	0.00051895	480.29269328466097	34.954	0.35487	34.954	34.848	35.203	0					15	9	3	0	0	0	0.66185	1	13116	13116		26.693	2.4902	1	263600			25583	8217	17039	17101	25928	25928					0.08895511245816579
LSGVKKKS	8	Unmodified	_LSGVKKKS_					0	0	0		ENST00000563857.1_1_16:2314061-2314644:-|nuORF;ENSG00000205937|ENST00000320225|RNPS1	ENST00000563857.1_1_16:2314061-2314644:-|nuORF	ENST00000563857.1_1_16:2314061-2314644:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.77362060546875	2	423.774003	845.533452	-0.81871	-0.00034695	-0.038129	-1.6158E-05	-0.85684	-0.00036311	423.7740148803559	11.627	0.08298	11.627	11.57	11.653	0					6	3	2	0	0	0	0.59411	1	2281	2281		50.025	12.865	1	110750			25584	7760	17040	17102	25929	25929					0.10450679139762542
LSGVTILDIPG	11	Unmodified	_LSGVTILDIPG_					0	0	0			REV__ENSG00000198879|ENST00000397167|SFMBT2	REV__ENSG00000198879|ENST00000397167|SFMBT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.8160400390625	2	542.816064	1083.61758	2.0401	0.0011074	-1.5656	-0.00084983	0.47447	0.00025755	542.8150543938082	40.955	0.23543	40.955	40.804	41.039	0					12	5	3	0	0	0	0.47622	1	16097	16097		45.972	8.8131	1	300990	+		25585	17444	17041	17103	25930	25930					0.07911165445989354
LSHCVMGMPW	10	Unmodified	_LSHCVMGMPW_					0	0	0			REV__ENST00000602140.1_1_19:8387163-8387238:+|nuORF	REV__ENST00000602140.1_1_19:8387163-8387238:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.7576904296875	2	580.756115	1159.49768	0.65647	0.00038125	1.3768	0.00079957	2.0332	0.0011808	580.7571966621265	29.457	0.26571	29.457	29.354	29.62	0					26	8	4	0	0	0	0.57532	1	9339	9339		37.159	0	1	1342800	+		25586	20603	17042	17104	25931	25931					-0.07569185695410852
LSHCVMGMPW	10	Unmodified	_LSHCVMGMPW_					0	0	0			REV__ENST00000602140.1_1_19:8387163-8387238:+|nuORF	REV__ENST00000602140.1_1_19:8387163-8387238:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.7575073242188	2	580.756115	1159.49768	-0.028038	-1.6283E-05	1.559	0.00090538	1.5309	0.00088909	580.7573386990181	29.691	0.68728	29.691	29.557	30.245	0					52	17	6	0	0	0	0.4943	1	10617	10617		45.952	1.5748	1	9323300	+		25587	20603	17042	17104	25932	25932					-0.07569185695410852
LSHDAICLT	9	Carbamidomethyl (C)	_LSHDAIC(Carbamidomethyl (C))LT_	LSHDAIC(1)LT		LSHDAIC(51)LT		0	1	0			REV__NEUROG3|p.R140C|1|0.29|ENSG00000122859|chr10:69572626-69572626|G/A|missense_variant	REV__NEUROG3|p.R140C|1|0.29|ENSG00000122859|chr10:69572626-69572626|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7561645507812	2	515.255317	1028.49608	1.191	0.00061367	-2.182	-0.0011243	-0.99099	-0.00051061	515.2540786774599	39.416	0.22315	39.416	39.342	39.565	0					11	8	2	0	0	0	0.2873	1	15000	15000		51.335	10.557	1	70153	+		25588	21284	17043	17105	25933	25933	735				-0.017027801881795313
LSHDDPRLP	9	Unmodified	_LSHDDPRLP_					0	0	0		ENST00000367833.6_1_1:168148269-168153151:+|nuORF	ENST00000367833.6_1_1:168148269-168153151:+|nuORF	ENST00000367833.6_1_1:168148269-168153151:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2726440429688	2	525.272355	1048.53016	0.98994	0.00051999	-0.80528	-0.00042299	0.18466	9.6996E-05	525.272040906261	21.584	0.16753	21.584	21.475	21.642	0					5	3	2	0	0	0	0.51817	1	7193	7193		30.504	1.3541	1	208220			25589	8916	17044	17106	25934	25934					0.00783384295095857
LSHEESVSF	9	Unmodified	_LSHEESVSF_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7427978515625	2	517.743096	1033.47164	0.047722	2.4707E-05	-0.13907	-7.2E-05	-0.091344	-4.7293E-05	517.7429690365722	31.254	0.17435	31.254	31.157	31.331	0					9	4	3	0	0	0	0.099922	1	11364	11364		79.451	21.64	1	299960			25590	2404	17045	17107	25935	25935					-0.04375717070047358
LSHIEPHLT	9	Unmodified	_LSHIEPHLT_					0	0	0		ENSG00000253309|ENST00000681248|SERPINE3;nc|ENSG00000253309|A8MV23|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7852783203125	2	523.785099	1045.55564	1.4653	0.00076753	-0.56458	-0.00029572	0.90076	0.00047181	523.7847148707286	23.597	0.23503	23.597	23.526	23.761	0					20	8	4	0	0	0	0.25109	1	6836	6836		55.504	6.0627	1	659820			25591	7998	17046	17108	25936	25936					0.03468858817495857
LSHINQSL	8	Unmodified	_LSHINQSL_					0	0	0		ENSG00000186409|ENST00000657597|CCDC30;nc|ENSG00000186409|Q5VVM6|CCDC30;ENST00000471390.5_1_1:43002943-43047151:+|nuORF	ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.2511901855469	2	456.250892	910.48723	-1.0778	-0.00049176	0.70284	0.00032067	-0.37499	-0.00017109	456.2514581721316	17.34	0.065153	17.34	17.278	17.343	0					4	2	2	0	0	0	0.37144	1	4322	4322		74.255	0	1	71561			25592	7135	17047	17109	25937	25937					0.028406142376638854
LSHKVLTCY	9	Unmodified	_LSHKVLTCY_					0	0	0			REV__ENST00000404141.5_1_7:154753335-154754148:-|nuORF	REV__ENST00000404141.5_1_7:154753335-154754148:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2836303710938	2	532.283877	1062.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.708	1	39.708	39.208	40.208	0								0	0	0	0.27939	1	13340	13340		39.253	13.803	1		+		25593	18964	17048	17110	25938	25938					0.024426870882052754
LSHLEERSP	9	Unmodified	_LSHLEERSP_					0	0	0			REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2784423828125	2	534.277638	1066.54072	1.1397	0.00060892	-0.62611	-0.00033452	0.51359	0.0002744	534.2774019140942	25.442	0.14142	25.442	25.362	25.503	0					10	6	2	0	0	0	0.40353	1	7645	7645		19.997	0	1	86709	+		25594	19887	17049	17111	25939	25939					0.010113669495240174
LSHLSKFF	8	Unmodified	_LSHLSKFF_					0	0	0			REV__ENST00000446801.6_1_15:66813463-66816015:+|nuORF	REV__ENST00000446801.6_1_15:66813463-66816015:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.27691650390625	2	489.774003	977.533452	0.6028	0.00029523	2.2649	0.0011093	2.8677	0.0014045	489.7751688434278	41.432	0.23494	41.432	41.279	41.514	0					16	10	2	0	0	0	0.60719	1	16303	16303		47.916	5.4411	1	71875	+		25595	19282	17050	17112	25940	25940					0.04378679139756514
LSHRRGIVF	9	Unmodified	_LSHRRGIVF_					0	0	0		ENSG00000118017|ENST00000236709|A4GNT	ENSG00000118017|ENST00000236709|A4GNT	ENSG00000118017|ENST00000236709|A4GNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.21630859375	3	362.217325	1083.63015	0.73309	0.00026554	-2.8466	-0.0010311	-2.1135	-0.00076554	362.2161911119987	21.657	0.14528	21.657	21.564	21.71	0					6	3	2	0	0	0	0.5654	1	6928	6928		19.104	0	1	529090			25596	3060	17051	17113	25941	25941					0.09167666419557463
LSHSALKQ	8	Unmodified	_LSHSALKQ_					0	0	0		nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.28948974609375	2	442.253434	882.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.747	1	12.747	12.247	13.247	0								0	0	0	1.7419	1	2747	2747		47.657	5.2612	1				25597	1869	17052	17114	25942	25942					0.0463691810026603
LSHSALKQ	8	Unmodified	_LSHSALKQ_					0	0	0		nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2532958984375	2	442.253434	882.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.79	1	12.79	12.29	13.29	0								0	0	0	1.7419	1	2767	2767		63.306	4.5243	1				25598	1869	17052	17114	25943	25943					0.0463691810026603
LSHTGKLAL	9	Unmodified	_LSHTGKLAL_					0	0	0		ENST00000500112.1_1_8:128221640-128221847:-|nuORF	ENST00000500112.1_1_8:128221640-128221847:-|nuORF	ENST00000500112.1_1_8:128221640-128221847:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2839050292969	2	470.284734	938.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.336	1	25.336	24.836	25.836	0								0	0	0	0.22284	1	8643	8643		47.657	0	1				25599	10144	17053	17115	25944	25944					0.08318064168463479
LSHTNILM	8	Unmodified	_LSHTNILM_					0	0	0		TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant;nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant	TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7493591308594	2	464.74967	927.484787	-0.16091	-7.4781E-05	-0.11846	-5.5053E-05	-0.27936	-0.00012983	464.7495994632531	23.409	0.10662	23.409	23.356	23.462	0					4	2	2	0	0	0	0.28158	1	7149	7149		88.643	0	1	162620			25600	7923	17054	17116	25945	25945					0.018144425083619353
LSHTNILM	8	Unmodified	_LSHTNILM_					0	0	0		TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant;nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant	TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7493896484375	2	464.74967	927.484787	-0.48745	-0.00022654	-0.40865	-0.00018992	-0.8961	-0.00041646	464.7496243049992	23.593	0.31228	23.593	23.435	23.747	0					16	6	4	0	0	0	0.2423	1	8006	8006		114.59	2.9376	1	1631800			25601	7923	17054	17116	25946	25946					0.018144425083619353
LSHTPSIAWC	10	Unmodified	_LSHTPSIAWC_					0	0	0		ENST00000268261.8_1_16:8942748-8942910:+|nuORF	ENST00000268261.8_1_16:8942748-8942910:+|nuORF	ENST00000268261.8_1_16:8942748-8942910:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7704467773438	2	557.771134	1113.52771	-0.48373	-0.00026981	-0.92546	-0.0005162	-1.4092	-0.00078601	557.7703057935493	15.153	0.093292	15.153	15.109	15.202	0					10	4	3	0	0	0	0.73274	1	3394	3394		16.473	0.83134	1	204390			25602	8369	17055	17117	25947	25947					-0.0245078743423619
LSIALNEL	8	Unmodified	_LSIALNEL_					0	0	0			REV__ENST00000445063.5_1_2:20113365-20153734:-|nuORF	REV__ENST00000445063.5_1_2:20113365-20153734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7579040527344	2	436.758018	871.501483	0.048292	2.1092E-05	-0.50981	-0.00022267	-0.46152	-0.00020157	436.757867521794	34.83	0.19916	34.83	34.744	34.943	0					9	5	2	0	0	0	0.25143	1	13001	13001		98.629	8.2596	1	267260	+		25603	14231	17056	17118	25948	25948					0.060592666659431416
LSIALNEL	8	Unmodified	_LSIALNEL_					0	0	0			REV__ENST00000445063.5_1_2:20113365-20153734:-|nuORF	REV__ENST00000445063.5_1_2:20113365-20153734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.75830078125	2	436.758018	871.501483	3.1918	0.001394	-2.8109	-0.0012277	0.38085	0.00016634	436.7567693101373	34.621	0.1397	34.621	34.55	34.69	0					11	6	2	0	0	0	0.34592	1	11683	11683		77.318	0.54344	1	85475	+		25604	14231	17056	17118	25949	25949					0.060592666659431416
LSIDQLRP	8	Unmodified	_LSIDQLRP_					0	0	0			REV__ENST00000314994.4_1_16:90038368-90038497:-|nuORF	REV__ENST00000314994.4_1_16:90038368-90038497:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2742004394531	2	471.274367	940.53418	-1.3553	-0.00063871	0.90215	0.00042516	-0.45313	-0.00021355	471.2747308041181	30.572	0.33739	30.572	30.445	30.782	0					22	12	2	0	0	0	0.70598	1	10120	10120		32.812	2.3088	1	141080	+		25605	18292	17057	17119	25950	25950					0.0615347378881097
LSIFWVLVSQA	11	Unmodified	_LSIFWVLVSQA_					0	0	0		ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.5773620605469	3	421.576296	1261.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.094	1	14.094	13.594	14.594	0								0	0	0	0.45674	1	2933	2933		18.531	1.063	1				25606	3505	17058	17120	25951	25951					0.08667420125379977
LSIGCYLLG	9	Unmodified	_LSIGCYLLG_					0	0	0			REV__STARD4|p.S131Y|1|0.27|ENSG00000164211|chr5:111501007-111501007|G/T|missense_variant	REV__STARD4|p.S131Y|1|0.27|ENSG00000164211|chr5:111501007-111501007|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7503967285156	2	469.754421	937.494289	-0.62549	-0.00029383	-3.3269	-0.0015628	-3.9524	-0.0018567	469.7532397180717	33.814	0.19468	33.814	33.725	33.92	0					8	5	2	0	0	0	0.30268	1	12580	12580		50.025	4.0726	1	286810	+		25607	21609	17059	17121	25952	25952					0.023042107938749723
LSIGDPGILA	10	Unmodified	_LSIGDPGILA_					0	0	0		ENST00000343605.4_1_22:31032071-31032353:+|nuORF	ENST00000343605.4_1_22:31032071-31032353:+|nuORF	ENST00000343605.4_1_22:31032071-31032353:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2763977050781	2	478.276575	954.538597	-1.4584	-0.00069751	0.37698	0.0001803	-1.0814	-0.00051721	478.27693115804215	31.983	0.23969	31.983	31.837	32.077	0					16	9	2	0	0	0	0.58896	1	10639	10639		35.618	0	1	135300			25608	8749	17060	17122	25953	25953					0.059509382117198584
LSIGLLGIGP	10	Unmodified	_LSIGLLGIGP_					0	0	0			REV__ENSG00000177465|ENST00000326303|ACOT4	REV__ENSG00000177465|ENST00000326303|ACOT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.29705810546875	2	470.29731	938.580068	-1.2699	-0.00059722	0.72696	0.00034189	-0.54292	-0.00025533	470.2976049389705	33.43	0.22978	33.43	33.341	33.571	0					15	9	2	0	0	0	0.4943	1	11206	11206		45.952	0	1	69379	+		25609	16696	17061	17123	25954	25954					0.10832118971040927
LSIGLLGIGP	10	Unmodified	_LSIGLLGIGP_					0	0	0			REV__ENSG00000177465|ENST00000326303|ACOT4	REV__ENSG00000177465|ENST00000326303|ACOT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.29718017578125	2	470.29731	938.580068	0.52736	0.00024801	-1.4591	-0.00068619	-0.93171	-0.00043818	470.2968885822771	33.591	0.46772	33.591	33.232	33.7	0					13	9	2	0	0	0	0.44469	1	12799	12799		51.335	8.9393	1	359280	+		25610	16696	17061	17123	25955	25955					0.10832118971040927
LSIIDFKQ	8	Unmodified	_LSIIDFKQ_					0	0	0		ENST00000414602.5_1_17:18759682-18768852:+|nuORF;ENST00000574522.5_1_17:18759682-18768852:+|nuORF	ENST00000414602.5_1_17:18759682-18768852:+|nuORF	ENST00000414602.5_1_17:18759682-18768852:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2784423828125	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.473	1	39.473	38.973	39.973	0								0	0	0	1.7419	1	15603	15603		34.173	1.3601	1				25611	9340	17062	17124	25956	25956					0.06091242074330694
LSIIYVCAL	9	Unmodified	_LSIIYVCAL_					0	0	0		ENST00000252674.8_2_19:6212397-6212727:-|nuORF	ENST00000252674.8_2_19:6212397-6212727:-|nuORF	ENST00000252674.8_2_19:6212397-6212727:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.19415283203125	3	332.192906	993.55689	3.0079	0.0009992	0.66174	0.00021983	3.6696	0.001219	332.1930903818958	17.455	0.76047	17.455	16.957	17.717	0					33	15	3	0	0	0	0.5654	1	4965	4965		25.574	6.4705	1	2000100			25612	8246	17063	17125	25957	25957					0.05985356862061053
LSIKKVPKKL	10	Unmodified	_LSIKKVPKKL_					0	0	0		tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.2736511230469	3	385.272548	1152.79581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.307	1	37.307	36.807	37.807	0								0	0	0	0.4201	1	14134	14134		14.694	2.487	1				25613	22613	17064	17126	25958	25958					0.22552880155694766
LSIKNTGSP	9	Unmodified	_LSIKNTGSP_					0	0	0			REV__tr|U7T2Q5|U7T2Q5_FUSNUCrossoverjunctionendodeoxyribonucleaseRuvCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ruvCPE=3SV=1	REV__tr|U7T2Q5|U7T2Q5_FUSNUCrossoverjunctionendodeoxyribonucleaseRuvCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ruvCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7584228515625	2	458.758549	915.502546	0.064981	2.9811E-05	0.24772	0.00011364	0.3127	0.00014345	458.7588481056973	15.118	0.12364	15.118	15.092	15.215	0					5	4	2	0	0	0	0.12239	1	3235	3235		74.255	13.283	1	45493	+		25614	22115	17065	17127	25959	25959					0.041414810348555875
LSILHLPLTF	10	Unmodified	_LSILHLPLTF_					0	0	0			REV__ENST00000487839.1_1_6:31603737-31604442:+|nuORF	REV__ENST00000487839.1_1_6:31603737-31604442:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.3533935546875	2	577.352617	1152.69068	0.8714	0.0005031	0.37669	0.00021748	1.2481	0.00072059	577.8545059413219	34.194	0.10625	34.194	34.132	34.239	0					6	4	2	0	0	0	0.48965	1	11175	11175		26.693	0	1	67972	+		25615	19682	17066	17128	25960	25960					0.12044338959276502
LSILLSEDPGR	11	Unmodified	_LSILLSEDPGR_					0	0	0			REV__nc|ENSG00000161649|Q6UXG3-5|CD300LG;REV__nc|ENSG00000161649|Q6UXG3-2|CD300LG	REV__nc|ENSG00000161649|Q6UXG3-5|CD300LG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.5580749511719	3	400.559194	1198.65575	0.93698	0.00037532	-0.90316	-0.00036177	0.033818	1.3546E-05	400.5588484214988	15.576	0.45509	15.576	15.369	15.824	0					19	11	2	0	0	0	0.56817	1	3989	3989		34.087	1.336	1	850720	+		25616	15784;21092	17067	17129	25961	25961					0.06437051360649093
LSINELIRDK	10	Unmodified	_LSINELIRDK_					0	0	0			REV__ENST00000462455.1_1_1:16011053-16044472:+|nuORF	REV__ENST00000462455.1_1_1:16011053-16044472:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.90301513671875	3	400.903072	1199.68739	0.83949	0.00033656	-1.3688	-0.00054876	-0.52932	-0.00021221	400.9025202586983	18.047	0.2685	18.047	17.887	18.156	0					13	5	3	0	0	0	0.4287	1	5485	5485		53.089	3.0554	1	583200	+		25617	14166	17068	17130	25962	25962					0.0955304411461384
LSINRQAEP	9	Unmodified	_LSINRQAEP_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2803344726562	2	514.28018	1026.54581	0.69352	0.00035666	-0.52627	-0.00027065	0.16725	8.6014E-05	514.2799724984203	19.14	0.21317	19.14	19.034	19.247	0					12	4	4	0	0	0	0.030949	1	5988	5988		108.09	20.333	1	1886600	+		25618	12922	17069	17131	25963	25963					0.033596708121422125
LSINRQAEP	9	Unmodified	_LSINRQAEP_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2803344726562	2	514.28018	1026.54581	0.1222	6.2844E-05	0.24053	0.0001237	0.36273	0.00018654	514.2803388521849	19.124	0.36376	19.124	18.997	19.36	0					14	7	4	0	0	0	0.01768	1	5856	5856		125.81	24.213	1	1739700	+		25619	12922	17069	17131	25964	25964					0.033596708121422125
LSINSAATPI	10	Unmodified	_LSINSAATPI_					0	0	0			REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7788391113281	2	493.779482	985.544411	-1.5955	-0.00078785	0.94462	0.00046643	-0.65093	-0.00032142	493.7800544724946	34.978	0.13799	34.978	34.928	35.066	0					9	5	2	0	0	0	0.536	1	11823	11823		41.427	2.1738	1	64083	+		25620	13103	17070	17132	25965	25965					0.05106036723384477
LSIPHLSIQ	9	Unmodified	_LSIPHLSIQ_					0	0	0			REV__ENST00000494283.1_1_14:50520012-50520198:+|nuORF	REV__ENST00000494283.1_1_14:50520012-50520198:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.29913330078125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.45	1	35.45	34.95	35.95	0								0	0	0	0.25587	1	13296	13296		42.864	2.0861	1		+		25621	19747	17071	17133	25966	25966					0.07810333339955378
LSIPSEARL	9	Unmodified	_LSIPSEARL_					0	0	0		ENST00000458176.5_1_X:123095593-123156435:+|nuORF;ENST00000466748.5_1_X:123095638-123189980:+|nuORF;ENST00000371145.7_1_X:123095638-123155247:+|nuORF;ENST00000371160.5_1_X:123095165-123156432:+|nuORF	ENST00000458176.5_1_X:123095593-123156435:+|nuORF	ENST00000458176.5_1_X:123095593-123156435:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.287109375	2	493.287474	984.560395	0.61984	0.00030576	-1.3182	-0.00065023	-0.69832	-0.00034447	493.286762243624	41.51	0.14137	41.51	41.454	41.595	0					6	5	2	0	0	0	0.13726	1	16330	16330		70.816	12.586	1	69901			25622	9708	17072	17134	25967	25967					0.06749742960278127
LSIQALLNAPN	11	Unmodified	_LSIQALLNAPN_					0	0	0		nc|ENSG00000276380|Q5JXB2|UBE2NL	nc|ENSG00000276380|Q5JXB2|UBE2NL	nc|ENSG00000276380|Q5JXB2|UBE2NL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	385.2237548828125	3	385.224034	1152.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.936	1	19.936	19.436	20.436	0								0	0	0	0.42918	1	5512	5512		30.569	2.4874	1				25623	11805	17073	17135	25968	25968					0.08005372568845814
LSIQEHCENK	10	Unmodified	_LSIQEHCENK_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant;PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant;PEAK1|p.N1433Tfs*19|1|0.1|ENSG00000173517|chr15:77115099-77115099|T/-|frameshift_variant;PEAK1|p.R562Sfs*34|1|0.06|ENSG00000173517|chr15:77180244-77180245|-/ATCATTCATGACGAGCCAACTTATGCTC|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.787353515625	2	600.787512	1199.56047	-0.18336	-0.00011016	0.23197	0.00013936	0.048611	2.9205E-05	600.7876043820212	21.649	0.14611	21.649	21.55	21.696	0					7	3	3	0	0	0	0.50881	1	6919	6919		44.377	4.319	1	757400			25624	6431	17074	17136	25969	25969					-0.03132625102034581
LSIQLAGGL	9	Unmodified	_LSIQLAGGL_					0	0	0			REV__ENST00000514438.1_2_5:180220073-180242536:-|nuORF	REV__ENST00000514438.1_2_5:180220073-180242536:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.2658996582031	2	436.26601	870.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.773	1	37.773	37.273	38.273	0								0	0	0	0.14033	1	14792	14792		62.107	1.1355	1		+		25625	18397	17075	17137	25970	25970					0.07702972902859528
LSIQWPGKR	9	Unmodified	_LSIQWPGKR_					0	0	0		ENSG00000123119|ENST00000417640|NECAB1	ENSG00000123119|ENST00000417640|NECAB1	ENSG00000123119|ENST00000417640|NECAB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.8157348632812	2	542.816733	1083.61891	0.27185	0.00014757	-0.57576	-0.00031253	-0.30391	-0.00016497	542.8162605918164	40.779	0.073437	40.779	40.708	40.782	0					7	4	2	0	0	0	0.41113	1	13621	13621		40.778	1.5253	1	76121			25626	3299	17076	17138	25971	25971					0.08044844325399936
LSISAASGTI	10	Unmodified	_LSISAASGTI_					0	0	0			REV__ENSG00000169564|ENST00000303577|PCBP1	REV__ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.25823974609375	2	460.258382	918.502212	-0.88938	-0.00040934	0.5019	0.00023101	-0.38747	-0.00017834	460.25861505714926	26.109	0.12803	26.109	26.026	26.154	0					11	4	3	0	0	0	0.41335	1	8153	8153		54.776	5.3348	1	169490	+		25627	16320	17077	17139	25972	25972					0.03970061315010298
LSISCPAELP	10	Unmodified	_LSISCPAELP_					0	0	0		ENSG00000135625|ENST00000436467|EGR4;nc|ENSG00000135625|Q05215|EGR4	ENSG00000135625|ENST00000436467|EGR4	ENSG00000135625|ENST00000436467|EGR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2693481445312	2	515.267893	1028.52123	1.4992	0.00077251	0.55987	0.00028849	2.0591	0.001061	515.2683743306316	31.02	0.75709	31.02	30.714	31.471	0					25	15	2	0	0	0	0.39566	1	11590	11590		56.721	7.185	1	385970			25628	4008	17078	17140	25973	25973					0.008112746143979166
LSISNLIP	8	Unmodified	_LSISNLIP_					0	0	0			REV__tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	REV__tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.7610778808594	2	428.760561	855.506569	0.21909	9.3938E-05	0.018393	7.8862E-06	0.23749	0.00010182	428.7605519992633	34.162	0.5096	34.162	33.917	34.426	0					50	23	3	0	0	0	0.58597	1	11214	11214		51.335	1.8939	1	558660	+		25629	22029	17079	17141	25974	25974					0.07303570528563341
LSISQPANSQ	10	Unmodified	_LSISQPANSQ_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7724609375	2	522.769645	1043.52474	2.0668	0.0010804	3.9688	0.0020748	6.0356	0.0031552	522.7717466273522	20.364	0.11423	20.364	20.305	20.419	0					4	2	2	0	0	0	0.4287	1	6319	6319		53.089	1.8963	1	34563			25630	6612	17080	17142	25975	25975					0.004716607126283634
LSITSKVQELQ	11	Unmodified	_LSITSKVQELQ_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	623.355712890625	2	623.356085	1244.69762	-0.40225	-0.00025075	0.51692	0.00032223	0.11467	7.1482E-05	623.356156520505	35.386	0.20033	35.386	35.305	35.506	0					10	5	3	0	0	0	0.24536	1	13263	13263		68.846	8.7279	1	180340			25631	3486	17081	17143	25976	25976					0.08505607049187347
LSITSKVQELQ	11	Unmodified	_LSITSKVQELQ_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	623.3558349609375	2	623.356085	1244.69762	-0.69143	-0.00043101	0.73434	0.00045775	0.042912	2.675E-05	623.356618170697	35.198	0.16742	35.198	35.125	35.293	0					13	7	3	0	0	0	0.30836	1	11895	11895		61.691	0	1	77497			25632	3486	17081	17143	25977	25977					0.08505607049187347
LSITSKVQELQ	11	Unmodified	_LSITSKVQELQ_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	623.3561401367188	2	623.356085	1244.69762	0.35031	0.00021837	-0.0657	-4.0954E-05	0.28461	0.00017741	623.3559900770108	35.175	0.11254	35.175	35.115	35.227	0					6	3	2	0	0	0	0.42065	1	12529	12529		50.034	0.59196	1	43543			25633	3486	17081	17143	25978	25978					0.08505607049187347
LSIVEPKA	8	Unmodified	_LSIVEPKA_					0	0	0			REV__ZNF606|p.Y383Ffs*5|1|0.1|ENSG00000166704|chr19:57979534-57979535|-/TGGAGAAAAA|frameshift_variant	REV__ZNF606|p.Y383Ffs*5|1|0.1|ENSG00000166704|chr19:57979534-57979535|-/TGGAGAAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.76629638671875	2	428.760561	855.506569	1.0384	0.00044523	1.8147	0.00077805	2.8531	0.0012233	428.7608161496088	34.365	0.84383	34.365	33.94	34.784	0					52	17	5	0	0	0	0.41701	1	13018	13018		68.787	0	1	4574100	+		25634	16138	17082	17144	25979	25979					0.07303570528563341
LSIVLETLF	9	Unmodified	_LSIVLETLF_					0	0	0			REV__ENST00000561688.1_1_16:2294286-2301561:-|nuORF	REV__ENST00000561688.1_1_16:2294286-2301561:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.8084106445312	2	517.810251	1033.60595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.207	1	39.207	38.707	39.707	0								0	0	0	0.34907	1	13991	13991		25.45	6.0902	1		+		25635	16226	17083	17145	25980	25980					0.09048968422666803
LSIYVMLVL	9	Unmodified	_LSIYVMLVL_					0	0	0			REV__ENST00000420068.1_1_21:34602513-34619036:+|nuORF	REV__ENST00000420068.1_1_21:34602513-34619036:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.8816833496094	3	350.88044	1049.61949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.54	1	25.54	25.04	26.04	0								0	0	0	0.29774	1	7692	7692		35.618	2.8059	1		+		25636	15700	17084	17146	25981	25981					0.09666502930235765
LSKAIVPGV	9	Unmodified	_LSKAIVPGV_					0	0	0			REV__ENSG00000119899|ENST00000355773|SLC17A5	REV__ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2840576171875	2	442.284203	882.553853	0.57475	0.0002542	-0.5638	-0.00024936	0.010946	4.8414E-06	442.2839170976413	33.584	1.0096	33.584	33.182	34.192	0					67	26	4	0	0	0	0.45358	1	12334	12334		37.159	1.5408	1	9659600	+		25637	14261	17085	17147	25982	25982					0.10787849799567084
LSKAQFHS	8	Unmodified	_LSKAQFHS_					0	0	0		POLE2|p.Y457Cfs*9|1|0.25|ENSG00000100479|chr14:49650391-49650392|AT/-|frameshift_variant;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2	POLE2|p.Y457Cfs*9|1|0.25|ENSG00000100479|chr14:49650391-49650392|AT/-|frameshift_variant	POLE2|p.Y457Cfs*9|1|0.25|ENSG00000100479|chr14:49650391-49650392|AT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2469787597656	2	459.245609	916.476666	0.80541	0.00036988	2.2282	0.0010233	3.0336	0.0013932	459.2467679108663	16.711	0.20981	16.711	16.62	16.83	0					8	5	3	0	0	0	0.58597	1	4591	4591		51.335	3.6781	1	632360			25638	2034	17086	17148	25983	25983					0.015086315832263608
LSKAWGRGGV	10	Unmodified	_LSKAWGRGGV_					0	0	0		KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant;KIF26A|p.R1269Gfs*7|1|0.38|ENSG00000066735|chr14:104176588-104176588|C/-|frameshift_variant;ENSG00000066735|ENST00000423312|KIF26A	KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant	KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7926635742188	2	515.793258	1029.57196	1.5144	0.00078112	-1.5917	-0.00082097	-0.077252	-3.9846E-05	515.7918880832193	25.457	0.31781	25.457	25.298	25.616	0					14	6	3	0	0	0	0.58189	1	8929	8929		36.447	4.8125	1	891430			25639	1396	17087	17149	25984	25984					0.05835984774262215
LSKDDTSPP	9	Unmodified	_LSKDDTSPP_					0	0	0		ENST00000401578.2_1_6:80776237-80776996:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ARHGAP21|p.I1365Rfs*23|1|0.25|ENSG00000107863|chr10:24591280-24591281|TA/-|frameshift_variant;ARHGAP21|p.K1443*|1|0.33|ENSG00000107863|chr10:24585962-24585963|-/A|frameshift_variant;ARHGAP21|p.D1617Tfs*32|1|0.1|ENSG00000107863|chr10:24585440-24585440|C/-|frameshift_variant;ENSG00000107863|ENST00000396432|ARHGAP21	ENST00000401578.2_1_6:80776237-80776996:-|nuORF	ENST00000401578.2_1_6:80776237-80776996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2374267578125	2	480.237647	958.460741	-0.17649	-8.4757E-05	2.0086	0.00096459	1.8321	0.00087983	480.23756044423106	24.977	0.50824	24.977	24.687	25.195	0					35	12	4	0	0	0	0.17854	1	8480	8480		64.207	2.0999	1	659620			25640	201	17088	17150	25985	25985					-0.020151194443315035
LSKESLSH	8	Unmodified	_LSKESLSH_					0	0	0			REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.27459716796875	2	450.742899	899.471246	0.018662	8.4118E-06	-0.5241	-0.00023623	-0.50544	-0.00022782	450.74268273496307	18.136	0.40508	18.136	17.841	18.246	0					18	12	2	0	0	0	0.49216	1	4382	4382		60.972	7.6205	1	91147	+		25641	14688	17089	17151	25986	25986					0.017489080007635494
LSKEYANK	8	Unmodified	_LSKEYANK_					0	0	0			REV__MYH7|p.E1490K|1|0.41|ENSG00000092054|chr14:23417204-23417204|C/T|missense_variant	REV__MYH7|p.E1490K|1|0.41|ENSG00000092054|chr14:23417204-23417204|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7582092285156	2	476.758549	951.502546	0.63501	0.00030275	-1.0019	-0.00047766	-0.36687	-0.00017491	476.758013468344	25.975	0.49777	25.975	25.636	26.134	0					14	8	2	0	0	0	0.58686	1	9189	9189		51.193	3.5354	1	1148400	+		25642	20907	17090	17152	25987	25987					0.024854810348415413
LSKGFGLATQ	10	Unmodified	_LSKGFGLATQ_					0	0	0		nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10;ENST00000463024.1_1_6:43406347-43410920:+|nuORF	nc|ENSG00000124574|Q5T3U5-2|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2891845703125	2	511.287474	1020.5604	1.0095	0.00051616	1.8024	0.00092157	2.812	0.0014377	511.28861337799606	17.265	0.21189	17.265	17.102	17.314	0					10	5	4	0	0	0	0.50287	1	4853	4853		45.022	0.64502	1	500180			25643	3385	17091	17153	25988	25988					0.05093742960275449
LSKGPGLEV	9	Unmodified	_LSKGPGLEV_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1;ENST00000569085.1_1_16:67263541-67263664:-|nuORF	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2633056640625	2	450.263468	898.512382	-1.1854	-0.00053375	1.2644	0.0005693	0.078954	3.555E-05	450.26398690411537	29.947	0.14745	29.947	29.877	30.024	0					7	5	2	0	0	0	0.56424	1	9805	9805		25.574	0.12388	1	59513			25644	4016	17092	17154	25989	25989					0.05906669040234647
LSKGPGLEV	9	Unmodified	_LSKGPGLEV_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1;ENST00000569085.1_1_16:67263541-67263664:-|nuORF	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.26385498046875	2	450.263468	898.512382	0.87576	0.00039432	-0.57968	-0.00026101	0.29608	0.00013331	450.2637359661614	30.137	0.31159	30.137	30.031	30.342	0					14	6	3	0	0	0	0.27249	1	11136	11136		52.937	1.6012	1	346280			25645	4016	17092	17154	25990	25990					0.05906669040234647
LSKGRQYLT	9	Unmodified	_LSKGRQYLT_					0	0	0			REV__ENSG00000122707|ENST00000377966|RECK	REV__ENSG00000122707|ENST00000377966|RECK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8091430664062	2	533.306198	1064.59784	3.3957	0.0018109	1.4312	0.00076327	4.8269	0.0025742	533.3070788304489	49.951	0.19299	49.951	49.832	50.025	0					11	8	2	0	0	0	0.51991	1	19723	19723		30.318	5.7985	1	74216	+		25646	14340	17093	17155	25991	25991					0.06812834225866027
LSKGRRAA	8	Unmodified	_LSKGRRAA_					0	0	0			REV__ENST00000585075.1_1_17:73267491-73267800:+|nuORF	REV__ENST00000585075.1_1_17:73267491-73267800:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7680358886719	2	429.767043	857.519533	2.5113	0.0010793	-2.636	-0.0011329	-0.12466	-5.3576E-05	429.7654364582517	34.468	0.60196	34.468	34.165	34.767	0					24	12	3	0	0	0	0.61938	1	13224	13224		45.952	7.1458	1	943520	+		25647	20463	17094	17156	25992	25992					0.08507446431303833
LSKIREEY	8	Unmodified	_LSKIREEY_					0	0	0		ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2830810546875	2	519.284931	1036.55531	1.3849	0.00071916	-0.57348	-0.0002978	0.81143	0.00042136	519.2846285120901	39.315	0.40178	39.315	39.189	39.591	0					32	14	3	0	0	0	0.6088	1	15054	15054		37.159	0	1	597170			25648	8050	17095	17157	25993	25993					0.03849439097643881
LSKKEIQK	8	Unmodified	_LSKKEIQK_					0	0	0		WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.2062683105469	3	325.206203	972.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.584	1	13.584	13.084	14.084	0								0	0	0	1.7419	1	3340	3340		74.255	2.9593	1				25649	1366	17096	17158	25994	25994					0.10938619856983678
LSKKLFFF	8	Unmodified	_LSKKLFFF_					0	0	0		ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.8745422363281	3	343.875906	1028.60589	0.68064	0.00023406	-3.1506	-0.0010834	-2.47	-0.00084936	343.87483691059373	29.533	0.42016	29.533	29.245	29.666	0					16	10	2	0	0	0	0.61938	1	10550	10550		45.952	0	1	386730			25650	2081	17097	17159	25995	25995					0.0927301321332834
LSKKNEFIY	9	Unmodified	_LSKKNEFIY_					0	0	0			REV__tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1	REV__tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.3145751953125	2	571.316232	1140.61791	2.0068	0.0011465	-2.9275	-0.0016725	-0.9207	-0.00052601	571.313978838939	32.796	0.71044	32.796	32.174	32.885	0					31	17	3	0	0	0	0.22823	1	12503	12503		51.193	0	1	299410	+		25651	21679	17098	17160	25996	25996					0.053225851658453394
LSKKRHNR	8	Unmodified	_LSKKRHNR_					0	0	0			REV__RERE|p.N49Ifs*46|1|0.41|ENSG00000142599|chr1:8656152-8656152|T/-|frameshift_variant	REV__RERE|p.N49Ifs*46|1|0.41|ENSG00000142599|chr1:8656152-8656152|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.881591796875	3	346.880825	1037.62064	1.5014	0.0005208	0.79362	0.00027529	2.295	0.00079609	346.88117668919824	20.486	0.31396	20.486	20.328	20.642	0					15	6	3	0	0	0	0.72381	1	6505	6505		30.504	2.4222	1	624180	+		25652	21456	17099	17161	25997	25997					0.10333898134012998
LSKKTSLPN	9	Unmodified	_LSKKTSLPN_					0	0	0		DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant;ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant;ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.29486083984375	2	494.295299	986.576045	-0.046266	-2.2869E-05	1.7475	0.00086376	1.7012	0.0008409	494.2962156163751	32.98	0.39528	32.98	32.77	33.165	0					15	9	2	0	0	0	0.27249	1	12593	12593		52.937	1.744	1	391430			25653	797;1015	17100	17162	25998	25998					0.08222029477326487
LSKLLLVVN	9	Unmodified	_LSKLLLVVN_					0	0	0			REV__nc|ENSG00000140829|Q92620-2|DHX38	REV__nc|ENSG00000140829|Q92620-2|DHX38	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.55816650390625	3	333.558466	997.653567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.896	1	34.896	34.396	35.396	0								0	0	0	0.36266	1	13485	13485		22.58	9.7679	1		+		25654	12701	17101	17163	25999	25999					0.15464667413516509
LSKLQLHSS	9	Unmodified	_LSKLQLHSS_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7928771972656	2	506.792924	1011.57129	0.85201	0.00043179	-1.1001	-0.00055755	-0.24814	-0.00012575	506.79240605470125	21.538	0.52872	21.538	21.264	21.792	0					27	12	3	0	0	0	0.071197	1	6862	6862		87.754	0	1	1125000	+		25655	15144	17102	17164	26000	26000					0.06597145334569632
LSKMSLLATMA	11	Unmodified	_LSKMSLLATMA_					0	0	0		KIF5A|p.F34Sfs*72|1|0.38|ENSG00000155980|chr12:57550369-57550369|T/-|frameshift_variant	KIF5A|p.F34Sfs*72|1|0.38|ENSG00000155980|chr12:57550369-57550369|T/-|frameshift_variant	KIF5A|p.F34Sfs*72|1|0.38|ENSG00000155980|chr12:57550369-57550369|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.2156677246094	3	389.215494	1164.62465	0.86825	0.00033794	-0.73479	-0.00028599	0.13346	5.1944E-05	389.21522783356386	19.313	0.77348	19.313	19.215	19.988	0					29	17	4	0	0	0	0.60833	1	5799	5799		36.318	1.1656	1	1596500			25656	11257	17103	17165	26001	26001					0.04892438730576032
LSKPLEKSF	9	Unmodified	_LSKPLEKSF_					0	0	0			REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8057861328125	2	524.8055	1047.59645	0.54059	0.0002837	0.092269	4.8423E-05	0.63286	0.00033213	524.8054734949329	36.247	0.51482	36.247	36.132	36.647	0					26	10	3	0	0	0	0.13267	1	14052	14052		71.877	0.58177	1	469960	+		25657	15783	17104	17166	26002	26002					0.07455200137110296
LSKQLGFF	8	Unmodified	_LSKQLGFF_					0	0	0		nc|ENSG00000161180|Q8IYX3-1|CCDC116;ENSG00000161180|ENST00000292779|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.26849365234375	2	470.268553	938.522553	2.5296	0.0011896	-2.8388	-0.001335	-0.30927	-0.00014544	470.2669741350091	42.616	0.23903	42.616	42.535	42.774	0					15	6	3	0	0	0	0.44433	1	17006	17006		65.803	0	1	241540			25658	5405	17105	17167	26003	26003					0.05083276765469691
LSKQPTFVN	9	Unmodified	_LSKQPTFVN_					0	0	0			REV__ENST00000476134.1_1_10:49609691-49618268:+|nuORF	REV__ENST00000476134.1_1_10:49609691-49618268:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2879028320312	2	517.287474	1032.5604	0.8868	0.00045873	1.0198	0.00052755	1.9066	0.00098628	517.2878241132479	26.445	0.13996	26.445	26.383	26.523	0					7	3	3	0	0	0	0.36135	1	8520	8520		45.022	3.5956	1	90429	+		25659	13857	17106	17168	26004	26004					0.04541742960304873
LSKQVSKKG	9	Unmodified	_LSKQVSKKG_					0	0	0			REV__CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant	REV__CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.5378723144531	3	325.537953	973.59203	1.5174	0.00049399	-1.2294	-0.00040022	0.28804	9.3769E-05	325.5374994814877	21.767	0.1669	21.767	21.658	21.825	0					8	3	3	0	0	0	0.30841	1	7279	7279		49.536	7.198	1	887800	+		25660	12390	17107	17169	26005	26005					0.10417735714236187
LSKRPPMSEL	10	Unmodified	_LSKRPPMSEL_					0	0	0			REV__ENSG00000136014|ENST00000258499|USP44	REV__ENSG00000136014|ENST00000258499|USP44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.5509033203125	3	386.549753	1156.62743	0.85417	0.00033018	2.4556	0.0009492	3.3097	0.0012794	386.55063078108697	14.341	0.12853	14.341	14.262	14.39	0					5	3	2	0	0	0	0.62149	1	3484	3484		31.634	1.0654	1	345040	+		25661	14841	17108	17170	26006	26006					0.05538030179741327
LSKSIDSH	8	Unmodified	_LSKSIDSH_					0	0	0			REV__tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	REV__tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7348327636719	2	443.735074	885.455596	-1.1594	-0.00051445	1.359	0.00060304	0.19963	8.8584E-05	443.7358300266772	18.5	0.18578	18.5	18.413	18.598	0					8	6	2	0	0	0	0.70055	1	4825	4825		33.516	0	1	128270	+		25662	21898	17109	17171	26007	26007					0.008286214837085026
LSKSISAIR	9	Unmodified	_LSKSISAIR_					0	0	0			REV__LACTB|p.E253Kfs*42|1|0.25|ENSG00000103642|chr15:63127489-63127489|A/-|frameshift_variant	REV__LACTB|p.E253Kfs*42|1|0.25|ENSG00000103642|chr15:63127489-63127489|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.8026123046875	2	487.803291	973.59203	-0.010706	-5.2224E-06	-0.4878	-0.00023795	-0.4985	-0.00024317	487.803057599227	21.503	0.18473	21.503	21.431	21.616	0					16	7	3	0	0	0	0.082776	1	5927	5927		77.318	9.8239	1	635340	+		25663	13691	17110	17172	26008	26008					0.1041773571421345
LSKSISAIR	9	Unmodified	_LSKSISAIR_					0	0	0			REV__LACTB|p.E253Kfs*42|1|0.25|ENSG00000103642|chr15:63127489-63127489|A/-|frameshift_variant	REV__LACTB|p.E253Kfs*42|1|0.25|ENSG00000103642|chr15:63127489-63127489|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.8031921386719	2	487.803291	973.59203	-1.0113	-0.00049333	0.85625	0.00041768	-0.15509	-7.5652E-05	487.80371294756776	21.542	0.1251	21.542	21.475	21.6	0					12	4	3	0	0	0	0.02429	1	6191	6191		110.12	7.3465	1	755480	+		25664	13691	17110	17172	26009	26009					0.1041773571421345
LSKSNPVI	8	Unmodified	_LSKSNPVI_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2580871582031	2	429.258185	856.501818	1.0269	0.00044079	-1.2387	-0.00053172	-0.21183	-9.0931E-05	429.2576215890206	27.197	0.32033	27.197	27.087	27.407	0					14	6	3	0	0	0	0.32597	1	9718	9718		79.713	2.395	1	492520			25665	1646	17111	17173	26010	26010					0.06782686385793113
LSKSRQTM	8	Unmodified	_LSKSRQTM_					0	0	0		ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7600402832031	2	475.758027	949.5015	2.2982	0.0010934	0.77726	0.00036979	3.0754	0.0014632	475.7583792428597	35.265	3.5626	35.265	34.46	38.022	0					124	72	3	0	0	0	0.52345	1	13536	13536		57.811	57.811	1	928520			25666	2575	17112	17174	26011	26011					0.024729433942979995
LSKTVVLGA	9	Unmodified	_LSKTVVLGA_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|346|3|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|346|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.281494140625	2	444.28166	886.548768	0.58861	0.00026151	-0.71879	-0.00031934	-0.13018	-5.7837E-05	444.2812890514652	23.608	0.27586	23.608	23.526	23.802	0					13	6	3	0	0	0	0.22837	1	7851	7851		58.23	5.2932	1	867980	+		25667	12469	17113	17175	26012	26012					0.10095545936940198
LSKYNWRSL	9	Unmodified	_LSKYNWRSL_					0	0	0			REV__SI|p.G1494Efs*26|1|0.04|ENSG00000090402|chr3:164998599-164998600|-/AGAATTTTGTT|frameshift_variant	REV__SI|p.G1494Efs*26|1|0.04|ENSG00000090402|chr3:164998599-164998600|-/AGAATTTTGTT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.5499267578125	3	389.548741	1165.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.142	1	19.142	18.642	19.642	0								0	0	0	0.27025	1	5140	5140		40.778	4.4605	1		+		25668	13426	17114	17176	26013	26013					0.04820523117223274
LSLAAQEL	8	Unmodified	_LSLAAQEL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.74261474609375	2	422.742368	843.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.681	1	27.681	27.181	28.181	0								0	0	0	1.7419	1	8562	8562		64.207	0	1				25669	7283	17115	17177	26014	26014					0.04218693631844417
LSLAQLKP	8	Unmodified	_LSLAQLKP_					0	0	0			REV__ENST00000422741.5_1_3:33414627-33427097:+|nuORF	REV__ENST00000422741.5_1_3:33414627-33427097:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2760009765625	2	435.276378	868.538203	0.6718	0.00029242	-1.4272	-0.00062122	-0.7554	-0.00032881	435.2759817057549	37.308	0.21581	37.308	37.219	37.434	0					8	6	2	0	0	0	0.67394	1	14140	14140		37.159	0	1	50781	+		25670	15547	17116	17178	26015	26015					0.09867563282512037
LSLDQSTWN	9	Unmodified	_LSLDQSTWN_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2567138671875	2	532.256371	1062.49819	1.0244	0.00054526	-0.57406	-0.00030555	0.45037	0.00023971	532.2562469346861	26.852	0.16169	26.852	26.792	26.954	0					9	5	2	0	0	0	0.41113	1	8206	8206		40.778	1.5253	1	108910			25671	3216	17117	17179	26016	26016					-0.030560281787074928
LSLDRVPAE	9	Unmodified	_LSLDRVPAE_					0	0	0			REV__ENST00000474615.1_1_3:8811035-8811122:-|nuORF	REV__ENST00000474615.1_1_3:8811035-8811122:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.77978515625	2	500.277106	998.53966	-1.0086	-0.00050456	1.9986	0.00099986	0.99005	0.0004953	500.2777128926159	23.504	0.17926	23.504	23.395	23.574	0					15	6	3	0	0	0	0.4966	1	7045	7045		32.812	1.2826	1	186500	+		25672	19519	17118	17180	26017	26017					0.04033152580609567
LSLDSVRSP	9	Unmodified	_LSLDSVRSP_					0	0	0		ENST00000473492.1_1_13:41791330-41800639:-|nuORF;nc|ENSG00000120662|O75570-2|MTRF1	ENST00000473492.1_1_13:41791330-41800639:-|nuORF	ENST00000473492.1_1_13:41791330-41800639:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.26904296875	2	487.269281	972.52401	-1.2448	-0.00060654	0.54108	0.00026365	-0.70368	-0.00034288	487.2695651580627	25.192	0.37697	25.192	25.03	25.407	0					37	12	5	0	0	0	0.25716	1	7781	7781		54.776	3.4409	1	4948100			25673	9875	17119	17181	26018	26018					0.03664866063570571
LSLEGKPL	8	Unmodified	_LSLEGKPL_					0	0	0		FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant;FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant;ENSG00000154783|ENST00000285046|FGD5	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.7606506347656	2	428.760561	855.506569	0.83001	0.00035587	-0.008364	-3.5861E-06	0.82164	0.00035229	428.7602293561756	34.417	0.78513	34.417	34.037	34.822	0					49	20	4	0	0	0	0.2498	1	12755	12755		101.6	2.9713	1	3414200			25674	5103	17120	17182	26019	26019					0.07303570528563341
LSLEGKPL	8	Unmodified	_LSLEGKPL_					0	0	0		FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant;FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant;ENSG00000154783|ENST00000285046|FGD5	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.7608642578125	2	428.760561	855.506569	-0.92302	-0.00039576	3.5469	0.0015208	2.6239	0.001125	428.7612318622367	34.289	0.71658	34.289	33.808	34.525	0					77	30	5	0	0	0	0.48092	1	11462	11462		62.107	10.772	1	957600			25675	5103	17120	17182	26020	26020					0.07303570528563341
LSLEGKPL	8	Unmodified	_LSLEGKPL_					0	0	0		FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant;FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant;ENSG00000154783|ENST00000285046|FGD5	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.7604064941406	2	428.760561	855.506569	0.94896	0.00040688	2.5058	0.0010744	3.4548	0.0014813	428.76051666013075	34.412	0.84312	34.412	33.997	34.84	0					58	21	4	0	0	0	0.22624	1	13181	13181		125.81	15.694	1	3293400			25676	5103	17120	17182	26021	26021					0.07303570528563341
LSLEGKPL	8	Unmodified	_LSLEGKPL_					0	0	0		FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant;FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant;ENSG00000154783|ENST00000285046|FGD5	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7608337402344	2	428.760561	855.506569	-0.24152	-0.00010355	2.2913	0.00098241	2.0498	0.00087886	428.76125706065085	34.169	0.67375	34.169	33.773	34.447	0					48	20	3	0	0	0	0.3049	1	12158	12158		82.241	10.945	1	596800			25677	5103	17120	17182	26022	26022					0.07303570528563341
LSLEGKPL	8	Unmodified	_LSLEGKPL_					0	0	0		FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant;FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant;ENSG00000154783|ENST00000285046|FGD5	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.76068115234375	2	428.760561	855.506569	1.0384	0.00044523	1.8147	0.00077805	2.8531	0.0012233	428.7608161496088	34.365	0.84383	34.365	33.94	34.784	0					52	17	5	0	0	0	0.27635	1	13089	13089		90.37	10.657	1	4574100			25678	5103	17120	17182	26023	26023					0.07303570528563341
LSLELYPAP	9	Unmodified	_LSLELYPAP_					0	0	0		ENSG00000116726|ENST00000357726|PRAMEF12;ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8	ENSG00000116726|ENST00000357726|PRAMEF12	ENSG00000116726|ENST00000357726|PRAMEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.777099609375	2	501.778951	1001.54335	-0.94876	-0.00047607	-2.7439	-0.0013769	-3.6927	-0.0018529	501.777514168739	28.049	0.13917	28.049	27.987	28.126	0					7	5	2	0	0	0	0.26904	1	9011	9011		53.351	10.955	1	63191			25679	2997	17121	17183	26024	26024					0.042638223544599896
LSLEVSRI	8	Unmodified	_LSLEVSRI_					0	0	0		BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant;BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant;ENSG00000178409|ENST00000369042|BEND3	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7759704589844	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.121	1	19.121	18.621	19.621	0								0	0	0	1.7419	1	4887	4887		49.442	5.3247	1				25680	294	17122	17184	26025	26025					0.07778357931567825
LSLFLLALH	9	Unmodified	_LSLFLLALH_					0	0	0		VSTM2B|p.L271F|1|0.32|ENSG00000187135|chr19:29563887-29563887|C/T|missense_variant	VSTM2B|p.L271F|1|0.32|ENSG00000187135|chr19:29563887-29563887|C/T|missense_variant	VSTM2B|p.L271F|1|0.32|ENSG00000187135|chr19:29563887-29563887|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.819091796875	2	513.820953	1025.62735	0.027647	1.4206E-05	-3.0654	-0.0015751	-3.0378	-0.0015609	513.8193103899387	24.443	0.13934	24.443	24.334	24.474	0					7	4	2	0	0	0	0.37197	1	7201	7201		28.254	0	1	51245			25681	23106	17123	17185	26026	26026					0.11556398242032628
LSLFLLALH	9	Unmodified	_LSLFLLALH_					0	0	0		VSTM2B|p.L271F|1|0.32|ENSG00000187135|chr19:29563887-29563887|C/T|missense_variant	VSTM2B|p.L271F|1|0.32|ENSG00000187135|chr19:29563887-29563887|C/T|missense_variant	VSTM2B|p.L271F|1|0.32|ENSG00000187135|chr19:29563887-29563887|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.8201293945312	2	513.820953	1025.62735	-1.6333	-0.00083923	-2.268	-0.0011653	-3.9013	-0.0020046	513.81994906536	24.541	0.17513	24.541	24.372	24.547	0					7	4	2	0	0	0	0.54267	1	7642	7642		28.254	7.3073	1	53892			25682	23106	17123	17185	26027	26027					0.11556398242032628
LSLGAAISAL	10	Unmodified	_LSLGAAISAL_					0	0	0			REV__ENST00000522591.1_2_8:143784477-143784786:+|nuORF	REV__ENST00000522591.1_2_8:143784477-143784786:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.27838134765625	2	458.279118	914.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.103	1	34.103	33.603	34.603	0								0	0	0	0.39244	1	11132	11132		32.812	0	1		+		25683	15769	17124	17186	26028	26028					0.08299242074315316
LSLGAGARRGG	11	Unmodified	_LSLGAGARRGG_					0	0	0			REV__ENST00000562955.2_2_1:43919018-43919642:+|nuORF	REV__ENST00000562955.2_2_1:43919018-43919642:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.79522705078125	2	507.793789	1013.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.3	1	36.3	35.8	36.8	0								0	0	0	0.2671	1	12990	12990		56.434	3.4971	1		+		25684	20312	17125	17187	26029	26029					0.06678199143198071
LSLGASFARL	10	Unmodified	_LSLGASFARL_					0	0	0			REV__ENST00000461200.5_1_11:2323274-2335767:+|nuORF	REV__ENST00000461200.5_1_11:2323274-2335767:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.8040771484375	2	517.803291	1033.59203	0.91295	0.00047273	-0.13458	-6.9687E-05	0.77837	0.00040304	517.8035907722438	39.537	0.1155	39.537	39.473	39.589	0					9	6	2	0	0	0	0.50881	1	14084	14084		44.377	0.26039	1	54180	+		25685	19382	17126	17188	26030	26030					0.07657735714224145
LSLGFLEKK	9	Unmodified	_LSLGFLEKK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.2135009765625	3	345.546337	1033.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.985	1	15.985	15.485	16.485	0								0	0	0	0.38123	1	4335	4335		12.207	0	1				25686	2718	17127	17189	26031	26031					0.10171790516778856
LSLGLVAPGL	10	Unmodified	_LSLGLVAPGL_					0	0	0			REV__TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	REV__TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2972717285156	2	470.29731	938.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.636	1	33.636	33.136	34.136	0								0	0	0	0.24422	1	12890	12890		58.782	0	1		+		25687	16344	17128	17190	26032	26032					0.10832118971029558
LSLGSTYGLY	10	Unmodified	_LSLGSTYGLY_					0	0	0			REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant;REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2806396484375	2	537.279315	1072.54408	0.29323	0.00015755	0.47104	0.00025308	0.76428	0.00041063	537.2795021557558	41.393	0.17847	41.393	41.329	41.508	0					9	7	2	0	0	0	0.57532	1	16275	16275		37.159	0	1	52876	+		25688	14736;12929	17129	17191	26033	26033					0.010706170035291507
LSLGSVLSASR	11	Unmodified	_LSLGSVLSASR_					0	0	0		ENST00000524741.1_1_8:11640652-11643779:+|nuORF;nc|ENSG00000154328|Q969S2-4|NEIL2;nc|ENSG00000154328|Q969S2-3|NEIL2;nc|ENSG00000154328|Q969S2-2|NEIL2;ENSG00000154328|ENST00000284503|NEIL2	ENST00000524741.1_1_8:11640652-11643779:+|nuORF	ENST00000524741.1_1_8:11640652-11643779:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3172607421875	2	545.316763	1088.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.533	1	50.533	50.033	51.033	0								0	0	0	0.41424	1	19915	19915		33.922	3.6039	1				25689	5085	17130	17192	26034	26034					0.07820799534761136
LSLGVLVSAG	10	Unmodified	_LSLGVLVSAG_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2789306640625	2	458.279118	914.543683	0.13241	6.0681E-05	-0.99826	-0.00045748	-0.86585	-0.0003968	458.2787156045795	34.133	0.26543	34.133	34.027	34.293	0					12	8	2	0	0	0	0.37692	1	12033	12033		58.782	4.0056	1	265380	+		25690	13398	17131	17193	26035	26035					0.08299242074326685
LSLHKVFTSG	10	Unmodified	_LSLHKVFTSG_					0	0	0			REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.54132080078125	3	363.541475	1087.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.284	1	22.284	21.784	22.784	0								0	0	0	0.41137	1	7388	7388		27.047	3.5246	1		+		25691	12109	17132	17194	26036	26036					0.062297183686723656
LSLHLLFMG	9	Unmodified	_LSLHLLFMG_					0	0	0		KANSL1|p.G179Efs*23|2|0.22|ENSG00000120071|chr17:46171608-46171608|C/-|frameshift_variant	KANSL1|p.G179Efs*23|2|0.22|ENSG00000120071|chr17:46171608-46171608|C/-|frameshift_variant	KANSL1|p.G179Efs*23|2|0.22|ENSG00000120071|chr17:46171608-46171608|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7921752929688	2	515.791338	1029.56812	0.74382	0.00038365	2.3794	0.0012273	3.1232	0.0016109	515.7920984775355	25.348	0.18709	25.348	25.21	25.397	0					7	4	2	0	0	0	0.47428	1	8058	8058		35.201	1.2791	1	148470			25692	11238	17133	17195	26037	26037					0.05452178956215903
LSLHLPWPR	9	Unmodified	_LSLHLPWPR_					0	0	0		ENST00000278980.10_1_20:31291015-31291180:-|nuORF	ENST00000278980.10_1_20:31291015-31291180:-|nuORF	ENST00000278980.10_1_20:31291015-31291180:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.8247680664062	2	559.827101	1117.63965	1.0693	0.00059862	-2.9616	-0.001658	-1.8923	-0.0010594	559.8253546759396	14.927	0.077247	14.927	14.894	14.971	0					6	4	2	0	0	0	0.61124	1	3251	3251		17.365	0.89182	1	41872			25693	8404	17134	17196	26038	26038					0.08553434705072505
LSLIKKKTES	10	Unmodified	_LSLIKKKTES_					0	0	0		TSC22D2|p.Q764Sfs*48|1|0.05|ENSG00000196428|chr3:150458583-150458583|C/-|frameshift_variant	TSC22D2|p.Q764Sfs*48|1|0.05|ENSG00000196428|chr3:150458583-150458583|C/-|frameshift_variant	TSC22D2|p.Q764Sfs*48|1|0.05|ENSG00000196428|chr3:150458583-150458583|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.9083557128906	3	382.907934	1145.70197	0.60761	0.00023266	0.36508	0.00013979	0.97269	0.00037245	382.9081140287783	22.78	0.6131	22.78	22.671	23.284	0					28	12	3	0	0	0	0.71484	1	7613	7613		14.086	14.086	1	2090200			25694	23072	17135	17197	26039	26039					0.13495116262743068
LSLIPRTRA	9	Unmodified	_LSLIPRTRA_					0	0	0		ENST00000359114.8_1_22:38087588-38087750:+|nuORF	ENST00000359114.8_1_22:38087588-38087750:+|nuORF	ENST00000359114.8_1_22:38087588-38087750:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.8853454589844	3	342.885464	1025.63456	1.4714	0.00050452	-1.3725	-0.0004706	0.09893	3.3921E-05	342.8850429353216	14.894	0.46304	14.894	14.582	15.045	0					26	9	4	0	0	0	0.28897	1	3948	3948		51.193	1.7511	1	1798500			25695	8843	17136	17198	26040	26040					0.12277130842471706
LSLISPNV	8	Unmodified	_LSLISPNV_					0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7524719238281	2	421.752736	841.490919	0.85034	0.00035863	-1.0883	-0.000459	-0.23797	-0.00010036	421.75226537952074	33.495	0.32151	33.495	33.296	33.618	0					16	7	3	0	0	0	0.46905	1	12849	12849		63.306	2.3343	1	186690	+		25696	21975	17137	17199	26041	26041					0.06383284011519663
LSLIYSAEN	9	Unmodified	_LSLIYSAEN_					0	0	0			REV__ENST00000250495.9_1_14:24686256-24686349:-|nuORF	REV__ENST00000250495.9_1_14:24686256-24686349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.17864990234375	3	337.178202	1008.51278	1.4859	0.00050102	-0.3414	-0.00011511	1.1445	0.0003859	337.17809792248704	14.175	0.38818	14.175	14.12	14.508	0					13	8	2	0	0	0	0.59802	1	3629	3629		16.717	0	1	1941300	+		25697	17962	17138	17200	26042	26042					0.008860439694331035
LSLKGEIP	8	Unmodified	_LSLKGEIP_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.7604675292969	2	428.760561	855.506569	0.83001	0.00035587	-0.008364	-3.5861E-06	0.82164	0.00035229	428.7602293561756	34.417	0.78513	34.417	34.037	34.822	0					49	20	4	0	0	0	0.37144	1	12921	12921		74.255	2.3776	1	3414200	+		25698	14349	17139	17201	26043	26043					0.07303570528563341
LSLKGEIP	8	Unmodified	_LSLKGEIP_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.760498046875	2	428.760561	855.506569	0.94896	0.00040688	2.5058	0.0010744	3.4548	0.0014813	428.76051666013075	34.412	0.84312	34.412	33.997	34.84	0					58	21	4	0	0	0	0.39125	1	13350	13350		71.877	5.4482	1	3293400	+		25699	14349	17139	17201	26044	26044					0.07303570528563341
LSLKIQPNT	9	Unmodified	_LSLKIQPNT_					0	0	0			REV__ENSG00000135773|ENST00000271971|CAPN9	REV__ENSG00000135773|ENST00000271971|CAPN9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.3032531738281	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.538	1	21.538	21.038	22.038	0								0	0	0	0.0124	1	7026	7026		107.01	5.7549	1		+		25700	14820	17140	17202	26045	26045					0.08590315994376851
LSLLDLGSN	9	Unmodified	_LSLLDLGSN_					0	0	0		ENSG00000185792|ENST00000332836|NLRP9;nc|ENSG00000185792|Q7RTR0-2|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2581787109375	2	466.258382	930.502212	0.65743	0.00030653	0.70274	0.00032766	1.3602	0.00063419	466.2589415726755	29.64	0.45544	29.64	29.441	29.896	0					15	9	2	0	0	0	0.35021	1	10897	10897		45.972	0	1	1085000			25701	7106	17141	17203	26046	26046					0.03418061315016985
LSLLQQHR	8	Unmodified	_LSLLQQHR_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.1980285644531	3	332.197931	993.571963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.741	1	17.741	17.241	18.241	0								0	0	0	1.7419	1	4506	4506		21.96	2.8564	1				25702	4207	17142	17204	26047	26047					0.07491984774276261
LSLLRFGTT	9	Unmodified	_LSLLRFGTT_					0	0	0			REV__ENST00000315127.8_2_15:74923516-74923606:-|nuORF	REV__ENST00000315127.8_2_15:74923516-74923606:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.86846923828125	3	336.53432	1006.58113	-0.67423	-0.0002269	0.48351	0.00016272	-0.19072	-6.4182E-05	336.5344784459758	26.88	0.61657	26.88	26.491	27.108	0					36	22	2	0	0	0	0.61124	1	8463	8463		14.137	0.68308	1	54278	+		25703	18294	17143	17205	26048	26048					0.0781033333993264
LSLLWYVV	8	Unmodified	_LSLLWYVV_					0	0	0			REV__ENSG00000110108|ENST00000227525|TMEM109	REV__ENSG00000110108|ENST00000227525|TMEM109	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7923889160156	2	496.794404	991.574254	-0.059228	-2.9424E-05	-3.6355	-0.0018061	-3.6947	-0.0018355	496.79272604153675	30.487	0.097965	30.487	30.441	30.539	0					6	3	2	0	0	0	0.55361	1	9734	9734		54.765	6.8491	1	40012	+		25704	13927	17144	17206	26049	26049					0.0781302045937764
LSLLYHVW	8	Unmodified	_LSLLYHVW_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7919921875	2	515.789653	1029.56475	4.5531	0.0023484	1.8556	0.00095711	6.4087	0.0033055	515.7902671349484	25.266	0.13066	25.266	25.231	25.362	0					11	4	3	0	0	0	0.66238	1	7845	7845		39.021	3.8695	1	96416			25705	1308	17145	17207	26050	26050					0.051152521738458745
LSLNFHLAL	9	Unmodified	_LSLNFHLAL_					0	0	0			REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|3|1|sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|3|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.3004760742188	2	514.300384	1026.58622	-0.18894	-9.717E-05	0.078628	4.0438E-05	-0.11031	-5.6732E-05	514.3004096065757	35.12	0.48346	35.12	34.872	35.356	0					25	21	2	0	0	0	0.50858	1	11850	11850		31.53	2.3803	1	120890	+		25706	20739	17146	17208	26051	26051					0.07398637202550162
LSLNLDKL	8	Unmodified	_LSLNLDKL_					0	0	0			REV__nc|ENSG00000102290|Q9BZA7-5|PCDH11X	REV__nc|ENSG00000102290|Q9BZA7-5|PCDH11X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.279052734375	2	458.279118	914.543683	0.72191	0.00033083	-0.59818	-0.00027413	0.12372	5.67E-05	458.27884207122094	34.34	0.3724	34.34	34.213	34.585	0					16	9	2	0	0	0	0.49216	1	13223	13223		60.972	0	1	1256400	+		25707	13631	17147	17209	26052	26052					0.08299242074315316
LSLNMEKF	8	Unmodified	_LSLNMEKF_					0	0	0			REV__KSR2|p.E633K|1|0.35|ENSG00000171435|chr12:117525174-117525174|C/T|missense_variant	REV__KSR2|p.E633K|1|0.35|ENSG00000171435|chr12:117525174-117525174|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.25640869140625	2	491.257328	980.500103	0.80929	0.00039757	-1.1936	-0.00058634	-0.38426	-0.00018877	491.2567516656719	36.31	0.25866	36.31	36.211	36.469	0					17	7	3	0	0	0	0.65148	1	13666	13666		40.778	3.6191	1	181440	+		25708	20802	17148	17210	26053	26053					0.009073093055462778
LSLPARSPS	9	Unmodified	_LSLPARSPS_					0	0	0			REV__ENST00000390289.2_1_22:22673091-22673434:+|nuORF	REV__ENST00000390289.2_1_22:22673091-22673434:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.26593017578125	2	464.266542	926.51853	0.57341	0.00026622	-0.41961	-0.00019481	0.1538	7.1403E-05	464.2657592153688	32.012	0.49639	32.012	31.654	32.151	0					24	12	3	0	0	0	0.24334	1	11730	11730		56.434	1.7114	1	122510	+		25709	18808	17149	17211	26054	26054					0.052331872717559236
LSLPEIVNS	9	Unmodified	_LSLPEIVNS_					0	0	0		ENST00000288937.6_1_11:6702876-6703137:-|nuORF	ENST00000288937.6_1_11:6702876-6703137:-|nuORF	ENST00000288937.6_1_11:6702876-6703137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.51904296875	3	324.518447	970.533512	0.28855	9.3639E-05	1.0975	0.00035614	1.386	0.00044978	324.5188233309217	26.216	0.099869	26.216	26.154	26.254	0					5	3	2	0	0	0	0.60749	1	7942	7942		21.686	0	1	73146			25710	8430	17150	17212	26055	26055					0.0470663434908829
LSLPSHTM	8	Unmodified	_LSLPSHTM_					0	0	0			REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2285461425781	2	443.228571	884.442588	0.24915	0.00011043	-0.2341	-0.00010376	0.015055	6.6728E-06	443.22871907615433	37.639	0.12429	37.639	37.568	37.693	0					12	7	2	0	0	0	0.59411	1	12319	12319		50.025	7.5501	1	42202	+		25711	17905	17151	17213	26056	26056					-0.004255329000329766
LSLPSHTM	8	Unmodified	_LSLPSHTM_					0	0	0			REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.22845458984375	2	443.228571	884.442588	0.58133	0.00025766	-1.0833	-0.00048014	-0.50196	-0.00022248	443.22817420688534	37.926	0.22951	37.926	37.848	38.077	0					27	10	3	0	0	0	0.52345	1	14409	14409		57.811	7.7867	1	294360	+		25712	17905	17151	17213	26057	26057					-0.004255329000329766
LSLPSHTM	8	Unmodified	_LSLPSHTM_					0	0	0			REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2284240722656	2	443.228571	884.442588	0.51545	0.00022846	-0.84164	-0.00037304	-0.32619	-0.00014458	443.22823870682384	37.905	0.27126	37.905	37.81	38.081	0					17	9	2	0	0	0	0.41952	1	14855	14855		68.485	10.673	1	311300	+		25713	17905	17151	17213	26058	26058					-0.004255329000329766
LSLPSHTM	8	Unmodified	_LSLPSHTM_					0	0	0			REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2281799316406	2	443.228571	884.442588	-0.49866	-0.00022102	-0.28978	-0.00012844	-0.78844	-0.00034946	443.2283155924156	37.861	0.30179	37.861	37.754	38.055	0					9	6	2	0	0	0	0.44433	1	14849	14849		65.803	5.5092	1	167160	+		25714	17905	17151	17213	26059	26059					-0.004255329000329766
LSLPSHTM	8	Unmodified	_LSLPSHTM_					0	0	0			REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	REV__ENST00000228799.6_1_12:2933460-2933670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.22833251953125	2	443.228571	884.442588	0.76191	0.0003377	-1.6942	-0.00075094	-0.93233	-0.00041324	443.22803899079554	37.844	0.29947	37.844	37.739	38.039	0					13	6	3	0	0	0	0.41952	1	14842	14842		68.485	10.673	1	753620	+		25715	17905	17151	17213	26060	26060					-0.004255329000329766
LSLQKEQL	8	Unmodified	_LSLQKEQL_					0	0	0		TRIM29|p.E403Rfs*7|1|0.16|ENSG00000137699|chr11:120125817-120125817|C/-|frameshift_variant;nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	TRIM29|p.E403Rfs*7|1|0.16|ENSG00000137699|chr11:120125817-120125817|C/-|frameshift_variant	TRIM29|p.E403Rfs*7|1|0.16|ENSG00000137699|chr11:120125817-120125817|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7817077636719	2	479.782025	957.549496	0.92268	0.00044269	-1.9733	-0.00094677	-1.0507	-0.00050409	479.7812687340676	21.628	0.16521	21.628	21.522	21.687	0					7	3	3	0	0	0	0.24622	1	7085	7085		108.09	3.3409	1	775900			25716	4184	17152	17214	26061	26061					0.06902340586009359
LSLQSVPL	8	Unmodified	_LSLQSVPL_					0	0	0		nc|ENSG00000139445|Q96NZ1-3|FOXN4;ENSG00000139445|ENST00000299162|FOXN4	nc|ENSG00000139445|Q96NZ1-3|FOXN4	nc|ENSG00000139445|Q96NZ1-3|FOXN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.76116943359375	2	428.760561	855.506569	0.21909	9.3938E-05	0.018393	7.8862E-06	0.23749	0.00010182	428.7605519992633	34.162	0.5096	34.162	33.917	34.426	0					50	23	3	0	0	0	0.32815	1	11084	11084		79.451	2.6044	1	558660			25717	4331	17153	17215	26062	26062					0.07303570528563341
LSLQSVPL	8	Unmodified	_LSLQSVPL_					0	0	0		nc|ENSG00000139445|Q96NZ1-3|FOXN4;ENSG00000139445|ENST00000299162|FOXN4	nc|ENSG00000139445|Q96NZ1-3|FOXN4	nc|ENSG00000139445|Q96NZ1-3|FOXN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.7607727050781	2	428.760561	855.506569	-0.92302	-0.00039576	3.5469	0.0015208	2.6239	0.001125	428.7612318622367	34.289	0.71658	34.289	33.808	34.525	0					77	30	5	0	0	0	0.29286	1	11597	11597		84.916	0	1	957600			25718	4331	17153	17215	26063	26063					0.07303570528563341
LSLRAGQHR	9	Unmodified	_LSLRAGQHR_					0	0	0			REV__ENST00000487330.1_1_9:74975472-74979818:-|nuORF	REV__ENST00000487330.1_1_9:74975472-74979818:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	346.53802490234375	3	346.536946	1036.58901	3.6356	0.0012599	-0.33332	-0.00011551	3.3023	0.0011444	346.5368758295516	20.077	0.070683	20.077	20.037	20.107	0					4	2	2	0	0	0	0.5741	1	5551	5551		24.519	0.99649	1	40280	+		25719	18727	17154	17216	26064	26064					0.07217905380093725
LSLRKKEEA	9	Unmodified	_LSLRKKEEA_					0	0	0			REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant	REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.5484924316406	3	358.548629	1072.62406	-0.06244	-2.2388E-05	-0.19015	-6.8177E-05	-0.25259	-9.0565E-05	358.54847981350616	19.454	0.21374	19.454	19.343	19.557	0					8	4	3	0	0	0	0.25761	1	6027	6027		54.722	0	1	366770	+		25720	14789	17155	17217	26065	26065					0.09065103397369967
LSLRQGCGA	9	Unmodified	_LSLRQGCGA_					0	0	0		nc|ENSG00000095981|Q96T55|KCNK16	nc|ENSG00000095981|Q96T55|KCNK16	nc|ENSG00000095981|Q96T55|KCNK16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7388610839844	2	452.737094	903.459635	-0.33542	-0.00015186	4.3741	0.0019803	4.0387	0.0018285	452.7388922481492	29.457	0.1184	29.457	29.379	29.497	0					5	3	2	0	0	0	0.41113	1	9305	9305		40.778	1.972	1	46596			25721	11457	17156	17218	26066	26066					0.0040438770578248295
LSLRQLPV	8	Unmodified	_LSLRQLPV_					0	0	0			REV__ENSG00000165355|ENST00000298097|FBXO33	REV__ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2953186035156	2	463.295102	924.575651	0.059479	2.7556E-05	0.046174	2.1392E-05	0.10565	4.8949E-05	463.2949947346716	25.396	0.13894	25.396	25.303	25.442	0					5	3	2	0	0	0	0.63077	1	8663	8663		44.117	6.9577	1	43161	+		25722	16038	17157	17219	26067	26067					0.11034654548132039
LSLRQVRE	8	Unmodified	_LSLRQVRE_					0	0	0			REV__nc|ENSG00000215112|Q5RGS3|FAM74A1	REV__nc|ENSG00000215112|Q5RGS3|FAM74A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.20135498046875	3	334.201452	999.582528	0.65288	0.00021819	-1.0124	-0.00033835	-0.35953	-0.00012015	334.2011152012562	16.539	0.2235	16.539	16.451	16.674	0					6	5	2	0	0	0	0.64144	1	4514	4514		42.396	1.618	1	331440	+		25723	21213	17158	17220	26068	26068					0.08271967428709104
LSLRSVASIV	10	Unmodified	_LSLRSVASIV_					0	0	0			REV__ENST00000486113.1_1_9:136726494-136857352:-|nuORF	REV__ENST00000486113.1_1_9:136726494-136857352:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8246459960938	2	522.824224	1043.63389	1.6251	0.00084965	-1.0282	-0.00053757	0.59692	0.00031208	522.8238516733066	33.948	0.55077	33.948	33.842	34.393	0					25	11	3	0	0	0	0.17732	1	12946	12946		82.241	0	1	4404300	+		25724	15745	17159	17221	26069	26069					0.1138229140274234
LSLSCKKER	9	Unmodified	_LSLSCKKER_					0	0	0		ENSG00000222038|ENST00000409602|POTEJ	ENSG00000222038|ENST00000409602|POTEJ	ENSG00000222038|ENST00000409602|POTEJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2996215820312	2	532.300059	1062.58556	3.4095	0.0018149	-2.5902	-0.0013788	0.81926	0.00043609	532.2990641809748	21.462	0.31565	21.462	21.355	21.67	0					12	6	3	0	0	0	0.15163	1	7000	7000		67.494	8.8641	1	1190200			25725	7857	17160	17222	26070	26070					0.05677474491199064
LSLSEYRRQR	10	Unmodified	_LSLSEYRRQR_					0	0	0		PPRC1|p.R759Q|1|0.33|ENSG00000148840|chr10:102140784-102140784|G/A|missense_variant	PPRC1|p.R759Q|1|0.33|ENSG00000148840|chr10:102140784-102140784|G/A|missense_variant	PPRC1|p.R759Q|1|0.33|ENSG00000148840|chr10:102140784-102140784|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.5781555175781	3	436.57747	1306.71058	2.666	0.0011639	-1.0783	-0.00047074	1.5877	0.00069316	436.576931303715	26.876	0.31503	26.876	26.772	27.087	0					14	6	3	0	0	0	0.62149	1	9563	9563		31.634	31.634	1	1043000			25726	11969	17161	17223	26071	26071					0.06949482951927166
LSLSLSGPSV	10	Unmodified	_LSLSLSGPSV_					0	0	0		ENST00000481856.1_1_7:4213871-4218865:+|nuORF	ENST00000481856.1_1_7:4213871-4218865:+|nuORF	ENST00000481856.1_1_7:4213871-4218865:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.27349853515625	2	480.274032	958.533512	-0.30429	-0.00014614	1.3015	0.0006251	0.99726	0.00047896	480.2744385021272	35.44	0.1209	35.44	35.326	35.447	0					6	4	2	0	0	0	0.34667	1	12623	12623		62.107	0	1	53541			25727	9962	17162	17224	26072	26072					0.052586343491157095
LSLSLTRTLAE	11	Unmodified	_LSLSLTRTLAE_					0	0	0			REV__ENST00000368680.3_1_1:153651158-153651548:+|nuORF	REV__ENST00000368680.3_1_1:153651158-153651548:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.90277099609375	3	401.902961	1202.68705	0.054207	2.1786E-05	-0.24787	-9.9621E-05	-0.19367	-7.7835E-05	401.9027086708714	23.471	0.16812	23.471	23.361	23.529	0					8	3	3	0	0	0	0.63225	1	8081	8081		34.087	0.16487	1	564610	+		25728	18611	17163	17225	26073	26073					0.09381624394791288
LSLSSLAGAPT	11	Unmodified	_LSLSSLAGAPT_					0	0	0		ENST00000589935.1_1_18:54318575-54318788:+|nuORF	ENST00000589935.1_1_18:54318575-54318788:+|nuORF	ENST00000589935.1_1_18:54318575-54318788:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28240966796875	2	508.784764	1015.55498	-0.021607	-1.0994E-05	-0.3076	-0.0001565	-0.32921	-0.0001675	508.7849258601691	32.617	0.41698	32.617	32.369	32.786	0					24	10	4	0	0	0	0.49805	1	11927	11927		44.377	7.9304	1	1254600			25729	10944	17164	17226	26074	26074					0.04782019377819324
LSLSVRAG	8	Unmodified	_LSLSVRAG_					0	0	0			REV__ENST00000549291.1_1_8:86157795-86157939:-|nuORF	REV__ENST00000549291.1_1_8:86157795-86157939:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.74267578125	2	401.742702	801.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.47	1	28.47	27.97	28.97	0								0	0	0	1.7419	1	10434	10434		53.351	2.016	1		+		25730	20185	17165	17227	26075	26075					0.06217533071571779
LSLTEGLGLG	10	Unmodified	_LSLTEGLGLG_					0	0	0		MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant;ENSG00000184350|ENST00000389832|MRGPRE	MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant	MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27362060546875	2	480.274032	958.533512	0.67387	0.00032364	0.68243	0.00032776	1.3563	0.0006514	480.27351729695926	40.164	0.28967	40.164	40.079	40.369	0					26	11	3	0	0	0	0.39566	1	15816	15816		56.721	7.185	1	305640			25731	7009	17166	17228	26076	26076					0.05258634349104341
LSLTQAGRPRP	11	Unmodified	_LSLTQAGRPRP_					0	0	0		FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant;FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1	FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant	FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	399.2351379394531	3	399.235045	1194.6833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.918	1	13.918	13.418	14.418	0								0	0	0	0.45674	1	2931	2931		14.086	2.4501	1				25732	5720	17167	17229	26077	26077					0.09374999411556928
LSLVKRTDL	9	Unmodified	_LSLVKRTDL_					0	0	0		nc|ENSG00000114107|Q8NHQ1-3|CEP70;ENST00000478673.5_1_3:138250446-138291769:-|nuORF;nc|ENSG00000114107|Q8NHQ1-2|CEP70;nc|ENSG00000114107|Q8NHQ1-5|CEP70;nc|ENSG00000114107|Q8NHQ1-4|CEP70;ENSG00000114107|ENST00000264982|CEP70	nc|ENSG00000114107|Q8NHQ1-3|CEP70	nc|ENSG00000114107|Q8NHQ1-3|CEP70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.824462890625	2	522.824224	1043.63389	0.44392	0.00023209	0.15514	8.1108E-05	0.59905	0.0003132	522.8242841395538	33.78	0.22408	33.78	33.721	33.945	0					14	8	2	0	0	0	0.27249	1	11363	11363		52.937	3.4952	1	226810			25733	2835	17168	17230	26078	26078					0.11382291402765077
LSLVLSPGA	9	Unmodified	_LSLVLSPGA_					0	0	0		ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7610168457031	2	428.760561	855.506569	-0.24152	-0.00010355	2.2913	0.00098241	2.0498	0.00087886	428.76125706065085	34.169	0.67375	34.169	33.773	34.447	0					48	20	3	0	0	0	0.036372	1	11997	11997		102.77	6.5829	1	596800			25734	10986	17169	17231	26079	26079					0.07303570528563341
LSMAKAGLGL	10	Oxidation (M)	_LSM(Oxidation (M))AKAGLGL_		LSM(1)AKAGLGL		LSM(49)AKAGLGL	0	0	1			REV__ENST00000591490.5_1_17:40821363-40821663:-|nuORF	REV__ENST00000591490.5_1_17:40821363-40821663:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7770690917969	2	488.778428	975.542302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.245	1	31.245	30.745	31.745	0								0	0	0	0.30913	1	11764	11764		49.442	7.0454	1		+		25735	13144	17170	17232	26080	26080		508			0.05355284713914443
LSMAQQGVGR	10	Unmodified	_LSMAQQGVGR_					0	0	0			REV__ENSG00000104848|ENST00000221444|KCNA7	REV__ENSG00000104848|ENST00000221444|KCNA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.777587890625	2	523.774208	1045.53386	3.4286	0.0017958	-0.1903	-9.9675E-05	3.2383	0.0016961	523.7759207393921	32.521	0.62191	32.521	32.236	32.858	0					35	12	4	0	0	0	0.2538	1	12298	12298		72.879	3.2516	1	1722800	+		25736	13738	17171	17233	26081	26081					0.012917307973111747
LSMGNAMFVK	10	Unmodified	_LSMGNAMFVK_					0	0	0		ENSG00000196136|ENST00000393078|SERPINA3;nc|ENSG00000196136|P01011-2|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	366.52056884765625	3	366.520917	1096.54092	-0.98463	-0.00036089	-0.059433	-2.1783E-05	-1.0441	-0.00038267	366.5208966008424	16.133	0.20222	16.133	16.045	16.248	0					12	7	2	0	0	0	0.60281	1	3789	3789		33.922	33.922	1	1145600			25737	7326	17172	17234	26082	26082					-0.003486726464871026
LSMKIVKPN	9	Unmodified	_LSMKIVKPN_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.87469482421875	3	343.875689	1028.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.262	1	29.262	28.762	29.762	0								0	0	0	0.36266	1	9218	9218		29.17	14.476	1				25738	11546	17173	17235	26083	26083					0.0920785050197992
LSMLACITTLP	11	Carbamidomethyl (C)	_LSMLAC(Carbamidomethyl (C))ITTLP_	LSMLAC(1)ITTLP		LSMLAC(47)ITTLP		0	1	0			REV__ENST00000216129.6_1_22:43563456-43563771:-|nuORF	REV__ENST00000216129.6_1_22:43563456-43563771:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.2176208496094	3	407.219015	1218.63522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.201	1	24.201	23.701	24.701	0								0	0	0	0.33523	1	8441	8441		47.228	6.1476	1		+		25739	17878	17174	17236	26084	26084	627				0.0346442138495604
LSMLKPCL	8	Unmodified	_LSMLKPCL_					0	0	0			REV__ENST00000376621.7_1_6:30513189-30513468:-|nuORF	REV__ENST00000376621.7_1_6:30513189-30513468:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7536315917969	2	452.753367	903.492181	-0.41343	-0.00018718	1.0901	0.00049354	0.67665	0.00030635	452.7538297677205	16.055	0.32039	16.055	15.896	16.217	0					12	6	3	0	0	0	0.61938	1	4357	4357		45.952	1.8352	1	309400	+		25740	18720	17175	17237	26085	26085					0.036574587844143025
LSMLSDLQIY	10	Unmodified	_LSMLSDLQIY_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.3013916015625	2	591.807382	1181.60021	3.1785	0.0018811	-0.05358	-3.1709E-05	3.1249	0.0018493	591.8063635789595	39.855	0.4992	39.855	39.718	40.217	0					27	11	4	0	0	0	0.19191	1	15814	15814		49.442	0	1	1455800			25741	5253	17176	17238	26086	26086					0.016675018486921545
LSMLTNNI	8	Unmodified	_LSMLTNNI_					0	0	0			REV__ENSG00000012983|ENST00000682126|MAP4K5	REV__ENSG00000012983|ENST00000682126|MAP4K5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.24078369140625	2	453.241678	904.468803	-1.1989	-0.0005434	-1.0603	-0.00048055	-2.2592	-0.001024	453.2416030103004	33.827	0.16807	33.827	33.777	33.945	0					9	6	2	0	0	0	0.68432	1	11391	11391		35.618	0	1	34907	+		25742	12913	17177	17239	26087	26087					0.012747362714321753
LSMQLNKL	8	Unmodified	_LSMQLNKL_					0	0	0			REV__ENST00000310301.8_1_7:38908822-38937725:-|nuORF	REV__ENST00000310301.8_1_7:38908822-38937725:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.77069091796875	2	473.773145	945.531738	-1.5818	-0.0007494	-2.5642	-0.0012148	-4.146	-0.0019642	473.7716693201817	25.594	0.16777	25.594	25.499	25.667	0					10	5	3	0	0	0	0.59773	1	7974	7974		49.442	5.3247	1	147140	+		25743	18266	17178	17240	26088	26088					0.05679302059490965
LSMTVAAQL	9	Unmodified	_LSMTVAAQL_					0	0	0			REV__nc|ENSG00000066427|P54252-5|ATXN3	REV__nc|ENSG00000066427|P54252-5|ATXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.257568359375	2	467.257328	932.500103	0.28811	0.00013462	-0.31662	-0.00014794	-0.028511	-1.3322E-05	467.2570598724925	30.961	0.13437	30.961	30.848	30.982	0					5	3	2	0	0	0	0.41113	1	11199	11199		40.778	6.6056	1	49842	+		25744	13126	17179	17241	26089	26089					0.031153093055309
LSMVKIVNY	9	Unmodified	_LSMVKIVNY_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9;ENST00000416133.1_1_X:136742915-136743272:+|nuORF	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7996826171875	2	533.801903	1065.58925	0.71336	0.00038079	-2.8442	-0.0015182	-2.1308	-0.0011375	533.8002582495217	40.994	0.23891	40.994	40.892	41.131	0					6	5	2	0	0	0	0.43426	1	16267	16267		38.806	0.99462	1	66829			25745	5196	17180	17242	26090	26090					0.05908144265072224
LSMVMVFIL	9	Unmodified	_LSMVMVFIL_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7974243164062	2	526.797774	1051.581	0.3953	0.00020824	-1.596	-0.00084075	-1.2007	-0.00063251	526.7971507643856	31.182	0.14992	31.182	31.132	31.282	0					7	5	2	0	0	0	0.4966	1	10314	10314		18.324	0	1	102700			25746	5857	17181	17243	26091	26091					0.05726874024094286
LSNAAREL	8	Unmodified	_LSNAAREL_					0	0	0		ENST00000483634.1_1_6:24408642-24418827:+|nuORF;nc|ENSG00000124532|Q9HD23-2|MRS2;MRS2|p.K414Rfs*11|2|0.26|ENSG00000124532|chr6:24423599-24423599|A/-|frameshift_variant;ENSG00000124532|ENST00000378386|MRS2;nc|ENSG00000124532|Q9HD23-4|MRS2	ENST00000483634.1_1_6:24408642-24418827:+|nuORF	ENST00000483634.1_1_6:24408642-24418827:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.24273681640625	2	437.243067	872.47158	0.73237	0.00032022	-1.2992	-0.00056807	-0.56684	-0.00024785	437.24241476678037	29.465	0.70543	29.465	28.911	29.616	0					23	15	2	0	0	0	0.30437	1	10925	10925		82.305	0.064519	1	816290			25747	3381	17182	17244	26092	26092					0.03024327720618203
LSNADKHTLS	10	Unmodified	_LSNADKHTLS_					0	0	0		ENST00000373606.7_1_20:35945124-35945295:+|nuORF	ENST00000373606.7_1_20:35945124-35945295:+|nuORF	ENST00000373606.7_1_20:35945124-35945295:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2852172851562	2	543.28292	1084.55129	3.6315	0.0019729	0.65945	0.00035827	4.2909	0.0023312	543.2833003125888	38.344	0.53495	38.344	38.143	38.678	0					35	11	6	0	0	0	0.41335	1	15054	15054		54.776	54.776	1	3713100			25748	9000	17183	17245	26093	26093					0.012393496039521779
LSNFEERF	8	Unmodified	_LSNFEERF_					0	0	0			REV__ENSG00000132334|ENST00000254667|PTPRE	REV__ENSG00000132334|ENST00000254667|PTPRE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2554931640625	2	521.253631	1040.49271	3.3851	0.0017645	-0.3799	-0.00019803	3.0052	0.0015664	521.2536413965122	34.077	1.238	34.077	33.924	35.162	0					52	25	3	0	0	0	0.5676	1	13034	13034		53.351	53.351	1	3909000	+		25749	14650	17184	17246	26094	26094					-0.025917069705201357
LSNHSTQVM	9	Unmodified	_LSNHSTQVM_					0	0	0		ENST00000381341.6_1_2:15746298-15747313:+|nuORF	ENST00000381341.6_1_2:15746298-15747313:+|nuORF	ENST00000381341.6_1_2:15746298-15747313:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7470397949219	2	508.745116	1015.47568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.17	1	33.17	32.67	33.67	0								0	0	0	0.27025	1	12676	12676		40.778	3.7497	1				25750	9113	17185	17247	26095	26095					-0.031439508479707
LSNHVFNAL	9	Unmodified	_LSNHVFNAL_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000584992.1_1_18:21044583-21047491:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7724914550781	2	507.771991	1013.52943	-0.029611	-1.5036E-05	0.9472	0.00048096	0.91759	0.00046593	507.7723362706609	38.157	0.12551	38.157	38.111	38.236	0					8	5	2	0	0	0	0.1424	1	14503	14503		69.628	6.3214	1	175320			25751	2135	17186	17248	26096	26096					0.023205896460240183
LSNIERLK	8	Unmodified	_LSNIERLK_					0	0	0		ENST00000600677.5_1_19:6744980-6751219:+|nuORF;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;ENSG00000125733|ENST00000313244|TRIP10	ENST00000600677.5_1_19:6744980-6751219:+|nuORF	ENST00000600677.5_1_19:6744980-6751219:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.79522705078125	2	486.795466	971.57638	0.63704	0.00031011	-1.0688	-0.0005203	-0.43178	-0.00021019	486.7949192665126	36.289	0.39564	36.289	36.113	36.509	0					20	11	4	0	0	0	0.39125	1	14125	14125		71.877	2.2498	1	914400			25752	3431	17187	17249	26097	26097					0.08945449197176458
LSNKASKKI	9	Unmodified	_LSNKASKKI_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.8055419921875	2	494.811116	987.60768	-0.7556	-0.00037388	-0.95162	-0.00047087	-1.7072	-0.00084475	494.8104707649118	23.387	0.11641	23.387	23.329	23.445	0					4	2	2	0	0	0	0.56424	1	8040	8040		25.574	1.0549	1	60515			25753	6507	17188	17250	26098	26098					0.11338022231268496
LSNKDCFNLIA	11	Unmodified	_LSNKDCFNLIA_					0	0	0		nc|ENSG00000175267|A6NCI4-2|VWA3A;VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant;ENSG00000175267|ENST00000389398|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.2120361328125	3	413.213029	1236.61726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.944	1	28.944	28.444	29.444	0								0	0	0	0.39826	1	9088	9088		37.508	1.1905	1				25754	6545	17189	17251	26099	26099					0.008414224544821991
LSNMSLLMQ	9	Oxidation (M)	_LSNM(Oxidation (M))SLLMQ_		LSNM(1)SLLMQ		LSNM(50)SLLM(-50)Q	0	0	1			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7599487304688	2	526.759378	1051.5042	2.0448	0.0010771	-1.0977	-0.00057825	0.94703	0.00049886	526.7587761292688	22.476	0.19035	22.476	22.384	22.575	0					10	4	3	0	0	0	0.16002	1	7322	7322		66.429	9.7082	2	513600	+		25755	13402	17190	17252	26100	26100		514			-0.019489692630486388
LSNNALITIL	10	Unmodified	_LSNNALITIL_					0	0	0		LRRC66|p.E369Rfs*34|1|0.18|ENSG00000188993|chr4:51995917-51995918|-/T|frameshift_variant;LRRC66|p.S621Lfs*6|1|0.25|ENSG00000188993|chr4:51995161-51995161|A/-|frameshift_variant;ENSG00000188993|ENST00000682860|LRRC66	LRRC66|p.E369Rfs*34|1|0.18|ENSG00000188993|chr4:51995917-51995918|-/T|frameshift_variant	LRRC66|p.E369Rfs*34|1|0.18|ENSG00000188993|chr4:51995917-51995918|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.3245849609375	2	536.324057	1070.63356	0.19663	0.00010546	1.2921	0.00069299	1.4887	0.00079845	536.3245667546532	34.863	0.19318	34.863	34.761	34.954	0					11	5	3	0	0	0	0.39827	1	13025	13025		56.434	1.7114	1	95239			25756	7288	17191	17253	26101	26101					0.10106871682910423
LSNNCDTGEK	10	Carbamidomethyl (C)	_LSNNC(Carbamidomethyl (C))DTGEK_	LSNNC(1)DTGEK		LSNNC(110)DTGEK		0	1	0		SMG7|p.N532H|1|0.04|ENSG00000116698|chr1:183542254-183542254|A/C|missense_variant;SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.N532H|1|0.04|ENSG00000116698|chr1:183542254-183542254|A/C|missense_variant	SMG7|p.N532H|1|0.04|ENSG00000116698|chr1:183542254-183542254|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2481689453125	2	569.245677	1136.4768	3.4452	0.0019612	0.9827	0.0005594	4.4279	0.0025206	569.2461158036042	31.743	0.9176	31.743	31.537	32.455	0					52	18	5	0	0	0	0.056886	1	11885	11885		107.01	16.638	1	5581700			25757	2995	17192	17254	26102	26102	113				-0.08597781269759253
LSNNPVAP	8	Unmodified	_LSNNPVAP_					0	0	0			REV__SYT4|p.K89N|1|0.31|ENSG00000132872|chr18:43274162-43274162|C/A|missense_variant	REV__SYT4|p.K89N|1|0.31|ENSG00000132872|chr18:43274162-43274162|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.2193298339844	2	406.21906	810.423567	-2.281	-0.0009266	1.6094	0.00065378	-0.67162	-0.00027283	406.2198843131885	24.072	0.43453	24.072	23.828	24.263	0					19	10	3	0	0	0	0.54629	1	7420	7420		55.504	0	1	1003200	+		25758	21617	17193	17255	26103	26103					0.0107725380055399
LSNNSISM	8	Unmodified	_LSNNSISM_					0	0	0		SLIT3|p.P1113Hfs*108|1|0.38|ENSG00000184347|chr5:168685904-168685904|G/-|frameshift_variant;nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	SLIT3|p.P1113Hfs*108|1|0.38|ENSG00000184347|chr5:168685904-168685904|G/-|frameshift_variant	SLIT3|p.P1113Hfs*108|1|0.38|ENSG00000184347|chr5:168685904-168685904|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.20806884765625	2	433.207835	864.401117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.171	1	31.171	30.671	31.671	0								0	0	0	1.7419	1	10000	10000		66.429	0.96389	1				25759	7008	17194	17256	26104	26104					-0.03650713659351368
LSNPVPAN	8	Unmodified	_LSNPVPAN_					0	0	0			REV__RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant	REV__RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.21905517578125	2	406.21906	810.423567	-1.3825	-0.00056161	0.58186	0.00023636	-0.80068	-0.00032525	406.2195447277658	24.023	0.45454	24.023	23.768	24.223	0					31	15	4	0	0	0	0.49887	1	7273	7273		60.294	10.269	1	1460300	+		25760	14175	17195	17257	26105	26105					0.0107725380055399
LSNPVPAN	8	Unmodified	_LSNPVPAN_					0	0	0			REV__RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant	REV__RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.2190246582031	2	406.21906	810.423567	-0.10523	-4.2746E-05	-1.0722	-0.00043553	-1.1774	-0.00047828	406.2189370990977	24.087	0.43995	24.087	23.794	24.234	0					23	10	3	0	0	0	0.64096	1	7427	7427		42.474	0	1	982090	+		25761	14175	17195	17257	26106	26106					0.0107725380055399
LSNSHLVLIG	10	Unmodified	_LSNSHLVLIG_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.8088989257812	2	526.808574	1051.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.63	1	24.63	24.13	25.13	0								0	0	0	0.37702	1	7710	7710		25.574	0	1				25762	1887	17196	17258	26107	26107					0.07885718368652306
LSNSHSQL	8	Unmodified	_LSNSHSQL_					0	0	0		TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant;ENSG00000182521|ENST00000247219|TBPL2	TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant	TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2247009277344	2	443.224874	884.435195	0.51489	0.00022821	-1.1633	-0.00051561	-0.64843	-0.0002874	443.224401529989	19.372	0.11623	19.372	19.313	19.43	0					4	2	2	0	0	0	0.3961	1	6126	6126		71.296	0	1	1037100			25763	6901	17197	17259	26108	26108					-0.01164549176098717
LSNSQSTWA	9	Unmodified	_LSNSQSTWA_					0	0	0			REV__USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	REV__USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.23626708984375	2	497.235439	992.456324	-0.30997	-0.00015413	1.7202	0.00085536	1.4103	0.00070123	497.23574560517494	12.409	0.15455	12.409	12.347	12.502	0					7	5	2	0	0	0	0.59802	1	2612	2612		21.96	3.6355	1	123740	+		25764	16354	17198	17260	26109	26109					-0.040205838672363825
LSNTKFCIQ	9	Unmodified	_LSNTKFCIQ_					0	0	0			REV__ENST00000426654.6_1_16:69733899-69734280:+|nuORF	REV__ENST00000426654.6_1_16:69733899-69734280:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2733764648438	2	527.273509	1052.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.617	1	32.617	32.117	33.117	0								0	0	0	0.25045	1	11992	11992		36.447	9.7538	1		+		25765	19119	17199	17261	26110	26110					0.008300967085460798
LSPAISKG	8	Unmodified	_LSPAISKG_					0	0	0		ENST00000424435.1_1_1:154375977-154376226:-|nuORF	ENST00000424435.1_1_1:154375977-154376226:-|nuORF	ENST00000424435.1_1_1:154375977-154376226:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.73193359375	2	386.731803	771.449054	-0.019634	-7.5929E-06	0.073386	2.8381E-05	0.053752	2.0788E-05	386.7316624191344	24.218	0.36539	24.218	23.978	24.343	0					17	11	2	0	0	0	0.64096	1	7087	7087		42.474	0	1	84304			25766	9420	17200	17262	26111	26111					0.05418728323002142
LSPALHAL	8	Unmodified	_LSPALHAL_					0	0	0		ENST00000359142.7_1_12:90010586-90010649:-|nuORF	ENST00000359142.7_1_12:90010586-90010649:-|nuORF	ENST00000359142.7_1_12:90010586-90010649:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	411.2478942871094	2	411.247621	820.480688	-1.4321	-0.00058896	1.8816	0.00077381	0.4495	0.00018486	411.24841084721214	35.214	0.16686	35.214	35.149	35.316	0					10	7	2	0	0	0	0.79176	1	11913	11913		21.702	6.0661	1	44926			25767	8844	17201	17263	26112	26112					0.06326721076936792
LSPAPGVGN	9	Unmodified	_LSPAPGVGN_					0	0	0			REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.21929931640625	2	406.21906	810.423567	0.62109	0.0002523	-0.73485	-0.00029851	-0.11376	-4.6213E-05	406.2187103534366	23.992	0.24502	23.992	23.895	24.14	0					17	7	3	0	0	0	0.37197	1	6998	6998		44.117	1.7207	1	931570	+		25768	15910	17202	17264	26113	26113					0.010772538005767274
LSPARGTKVY	10	Unmodified	_LSPARGTKVY_					0	0	0			REV__nc|ENSG00000214881|A8MWL7|TMEM14DP	REV__nc|ENSG00000214881|A8MWL7|TMEM14DP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3148803710938	2	546.314023	1090.61349	0.33485	0.00018293	-0.40937	-0.00022365	-0.074523	-4.0713E-05	546.313703585964	31.02	1.8783	31.02	30.88	32.759	0					106	42	5	0	0	0	0.46215	1	11989	11989		49.442	1.5259	1	45109000	+		25769	21211	17203	17265	26114	26114					0.07181120742961866
LSPATVTLPEP	11	Unmodified	_LSPATVTLPEP_					0	0	0			REV__nc|ENSG00000169398|Q05397-4|PTK2	REV__nc|ENSG00000169398|Q05397-4|PTK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	375.54541015625	3	375.544773	1123.61249	0.24139	9.0654E-05	0.66015	0.00024792	0.90155	0.00033857	375.5450929076682	29.725	0.168	29.725	29.616	29.784	0					5	3	2	0	0	0	0.7098	1	11029	11029		17.833	0	1	131950	+		25770	16311	17204	17266	26115	26115					0.055628615833938966
LSPCLHRS	8	Unmodified	_LSPCLHRS_					0	0	0		FAM117A|p.V445Cfs*7|1|0.22|ENSG00000121104|chr17:49711284-49711284|C/-|frameshift_variant;ENSG00000121104|ENST00000240364|FAM117A	FAM117A|p.V445Cfs*7|1|0.22|ENSG00000121104|chr17:49711284-49711284|C/-|frameshift_variant	FAM117A|p.V445Cfs*7|1|0.22|ENSG00000121104|chr17:49711284-49711284|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7389221191406	2	456.739637	911.464721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.632	1	37.632	37.132	38.132	0								0	0	0	1.7419	1	14281	14281		42.396	5.237	1				25771	3213	17205	17267	26116	26116					0.0054469156839331845
LSPCPRGDGQ	10	Unmodified	_LSPCPRGDGQ_					0	0	0			REV__THSD7A|p.C1369Lfs*5|1|0.13|ENSG00000005108|chr7:11406431-11406432|-/A|frameshift_variant	REV__THSD7A|p.C1369Lfs*5|1|0.13|ENSG00000005108|chr7:11406431-11406432|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2432861328125	2	515.242741	1028.47093	-0.12741	-6.565E-05	0.30911	0.00015927	0.1817	9.3618E-05	515.2429842670975	17.17	0.07066	17.17	17.108	17.179	0					4	2	2	0	0	0	0.65213	1	4247	4247		27.882	1.0861	1	357420	+		25772	12834	17206	17268	26117	26117					-0.04216834990734242
LSPCSSIGK	9	Unmodified	_LSPCSSIGK_					0	0	0		ENSG00000107263|ENST00000683357|RAPGEF1;nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1	ENSG00000107263|ENST00000683357|RAPGEF1	ENSG00000107263|ENST00000683357|RAPGEF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.2320556640625	2	446.233853	890.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.968	1	39.968	39.468	40.468	0								0	0	0	0.27025	1	14223	14223		40.778	3.6191	1				25773	2475	17207	17269	26118	26118					0.0035444975439986592
LSPDSIPQK	9	Unmodified	_LSPDSIPQK_					0	0	0		ENST00000343916.7_1_20:61472127-61472319:+|nuORF	ENST00000343916.7_1_20:61472127-61472319:+|nuORF	ENST00000343916.7_1_20:61472127-61472319:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7711181640625	2	492.771657	983.528761	-0.054641	-2.6925E-05	-0.50715	-0.00024991	-0.56179	-0.00027684	492.7713516697837	22.165	0.26371	22.165	22.021	22.285	0					10	5	3	0	0	0	0.47038	1	7483	7483		35.618	1.6967	1	135670			25774	8753	17208	17270	26119	26119					0.03633750206336117
LSPFPTRRGS	10	Unmodified	_LSPFPTRRGS_					0	0	0		ENST00000565083.1_1_16:88763978-88764554:-|nuORF	ENST00000565083.1_1_16:88763978-88764554:-|nuORF	ENST00000565083.1_1_16:88763978-88764554:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098083496094	3	373.208607	1116.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.816	1	42.816	42.316	43.316	0								0	0	0	0.38322	1	17110	17110		26.063	0	1				25775	10744	17209	17271	26120	26120					0.050353524574120456
LSPHKKAQGI	10	Unmodified	_LSPHKKAQGI_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.5515441894531	3	360.217102	1077.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.52	1	25.52	25.02	26.02	0								0	0	0	0.40797	1	7684	7684		28.081	3.5623	1		+		25776	17207	17210	17272	26121	26121					0.09376826979860198
LSPHMHML	8	Unmodified	_LSPHMHML_					0	0	0		ENST00000451871.1_1_13:42499863-42500601:+|nuORF	ENST00000451871.1_1_13:42499863-42500601:+|nuORF	ENST00000451871.1_1_13:42499863-42500601:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2370300292969	2	483.238415	964.462278	-0.14489	-7.0016E-05	-2.3114	-0.001117	-2.4563	-0.001187	483.23707710346264	22.966	0.30012	22.966	22.834	23.134	0					13	7	2	0	0	0	0.55361	1	7543	7543		54.765	15.959	1	811420			25777	9655	17211	17273	26122	26122					-0.021374801609113092
LSPKCMSPP	9	Unmodified	_LSPKCMSPP_					0	0	0		ENST00000436123.1_1_3:24138699-24138891:-|nuORF	ENST00000436123.1_1_3:24138699-24138891:-|nuORF	ENST00000436123.1_1_3:24138699-24138891:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2378845214844	2	480.238081	958.461609	-2.9257	-0.001405	3.7652	0.0018082	0.83947	0.00040315	480.23911126176586	24.766	0.42034	24.766	24.533	24.953	0					20	9	3	0	0	0	0.22377	1	7784	7784		58.782	3.2778	1	120530			25778	9528	17212	17274	26123	26123					-0.01928319600631312
LSPLHSLTPY	10	Unmodified	_LSPLHSLTPY_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3086547851562	2	564.308406	1126.60226	1.8898	0.0010664	-1.8007	-0.0010161	0.08913	5.0297E-05	564.3076075168971	40.185	0.3246	40.185	40.021	40.345	0					26	12	3	0	0	0	0.60076	1	15809	15809		34.173	2.2177	1	137880			25779	5459	17213	17275	26124	26124					0.04402298648801661
LSPLRGRSPA	10	Unmodified	_LSPLRGRSPA_					0	0	0		ENST00000368039.2_1_1:160771962-160772262:+|nuORF	ENST00000368039.2_1_1:160771962-160772262:+|nuORF	ENST00000368039.2_1_1:160771962-160772262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.3125610351562	2	527.311815	1052.60908	-1.2012	-0.00063339	1.9304	0.0010179	0.72918	0.00038451	527.312764337756	21.896	0.19612	21.896	21.792	21.988	0					9	4	3	0	0	0	0.63019	1	6439	6439		8.6937	0	1	198360			25780	8920	17214	17276	26125	26125					0.08487656320039605
LSPLSLAQY	9	Unmodified	_LSPLSLAQY_					0	0	0		LOXL2|p.K759Sfs*9|1|0.3|ENSG00000134013|chr8:23298092-23298092|T/-|frameshift_variant;ENSG00000134013|ENST00000389131|LOXL2	LOXL2|p.K759Sfs*9|1|0.3|ENSG00000134013|chr8:23298092-23298092|T/-|frameshift_variant	LOXL2|p.K759Sfs*9|1|0.3|ENSG00000134013|chr8:23298092-23298092|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2765197753906	2	496.276575	990.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.441	1	31.441	30.941	31.941	0								0	0	0	0.17378	1	10107	10107		54.776	10.399	1				25781	3886	17215	17277	26126	26126					0.04294938211717181
LSPLSLGRA	9	Unmodified	_LSPLSLGRA_					0	0	0			REV__nc|ENSG00000162976|Q8N755-2|SLC66A3	REV__nc|ENSG00000162976|Q8N755-2|SLC66A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.27691650390625	2	457.276909	912.539266	-0.61958	-0.00028332	0.42592	0.00019476	-0.19366	-8.8556E-05	457.277029380327	32.621	0.28212	32.621	32.511	32.793	0					11	7	2	0	0	0	0.27249	1	12408	12408		52.937	0	1	366180	+		25782	15850	17216	17278	26127	26127					0.07949777651435852
LSPMSAGAL	9	Oxidation (M)	_LSPM(Oxidation (M))SAGAL_		LSPM(1)SAGAL		LSPM(82)SAGAL	0	0	1			REV__SLC35E4|p.S64P|1|0.42|ENSG00000100036|chr22:30636640-30636640|T/C|missense_variant	REV__SLC35E4|p.S64P|1|0.42|ENSG00000100036|chr22:30636640-30636640|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.72015380859375	2	431.720578	861.426604	-0.48513	-0.00020944	-0.31132	-0.00013441	-0.79646	-0.00034385	431.7204789266628	27.279	0.16914	27.279	27.169	27.338	0					6	3	2	0	0	0	0.087582	1	9877	9877		82.305	7.7884	1	162190	+		25783	21532	17217	17279	26128	26128		779			-0.00965239136917262
LSPNHAQL	8	Unmodified	_LSPNHAQL_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;MROH8|p.F768Lfs*38|1|0.13|ENSG00000101353|chr20:37120510-37120510|A/-|frameshift_variant;MROH8|p.N894Tfs*7|1|0.08|ENSG00000101353|chr20:37114081-37114081|T/-|frameshift_variant	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.23773193359375	2	440.237784	878.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.815	1	24.815	24.315	25.315	0								0	0	0	1.7419	1	7796	7796		37.159	2.9866	1				25784	2113	17218	17280	26129	26129					0.016923450661806783
LSPQKVTLY	9	Unmodified	_LSPQKVTLY_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.80615234375	2	524.8055	1047.59645	1.0012	0.00052542	-0.19153	-0.00010052	0.80964	0.0004249	524.8055478287181	36.306	0.41095	36.306	36.214	36.625	0					20	11	2	0	0	0	0.45358	1	14119	14119		37.159	4.3467	1	88689			25785	5352	17219	17281	26130	26130					0.07455200137133033
LSPQPVQKN	9	Unmodified	_LSPQPVQKN_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.78448486328125	2	505.785099	1009.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.983	1	30.983	30.483	31.483	0								0	0	0	0.36266	1	9920	9920		21.96	0	1				25786	2459	17220	17282	26131	26131					0.05124858817521272
LSPRALAILWA	11	Unmodified	_LSPRALAILWA_					0	0	0		ENST00000495794.5_1_5:881851-881974:-|nuORF	ENST00000495794.5_1_5:881851-881974:-|nuORF	ENST00000495794.5_1_5:881851-881974:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.2481384277344	3	404.248403	1209.72338	-0.47781	-0.00019315	0.31431	0.00012706	-0.1635	-6.6094E-05	404.24848740555154	25.581	0.5127	25.581	25.362	25.874	0					25	10	4	0	0	0	0.66915	1	8785	8785		30.569	0	1	665960			25787	10113	17221	17283	26132	26132					0.12690546082126275
LSPRVENR	8	Unmodified	_LSPRVENR_					0	0	0			REV__ENST00000496725.1_1_2:8967049-8967241:-|nuORF	REV__ENST00000496725.1_1_2:8967049-8967241:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.775146484375	2	485.775065	969.535577	-0.56045	-0.00027225	-1.1049	-0.00053674	-1.6654	-0.00080899	485.77493958333986	18.921	0.59073	18.921	18.719	19.309	0					25	12	3	0	0	0	0.64144	1	5809	5809		17.365	0	1	331600	+		25788	19777	17222	17284	26133	26133					0.04959107877562019
LSPRYDPDSG	10	Unmodified	_LSPRYDPDSG_					0	0	0		TRIM46|p.I626L|1|0.27|ENSG00000163462|chr1:155182139-155182139|A/C|missense_variant	TRIM46|p.I626L|1|0.27|ENSG00000163462|chr1:155182139-155182139|A/C|missense_variant	TRIM46|p.I626L|1|0.27|ENSG00000163462|chr1:155182139-155182139|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7593994140625	2	553.759278	1105.504	0.61506	0.0003406	0.11891	6.5849E-05	0.73398	0.00040645	553.7592589004436	24.674	0.4249	24.674	24.478	24.902	0					17	10	3	0	0	0	0.23612	1	8333	8333		75.043	0	1	674060			25789	23063	17223	17285	26134	26134					-0.04452929667058925
LSPRYDPDSG	10	Unmodified	_LSPRYDPDSG_					0	0	0		TRIM46|p.I626L|1|0.27|ENSG00000163462|chr1:155182139-155182139|A/C|missense_variant	TRIM46|p.I626L|1|0.27|ENSG00000163462|chr1:155182139-155182139|A/C|missense_variant	TRIM46|p.I626L|1|0.27|ENSG00000163462|chr1:155182139-155182139|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7597045898438	2	553.759278	1105.504	1.6216	0.00089796	-0.92021	-0.00050958	0.70135	0.00038838	553.758803575879	24.653	0.21683	24.653	24.545	24.762	0					10	4	3	0	0	0	0.47859	1	8662	8662		47.657	0	1	1197800			25790	23063	17223	17285	26135	26135					-0.04452929667058925
LSPSLGPS	8	Unmodified	_LSPSLGPS_					0	0	0			REV__nc|ENSG00000204970|Q9Y5I3-3|PCDHA1	REV__nc|ENSG00000204970|Q9Y5I3-3|PCDHA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.20947265625	2	379.208161	756.401769	3.2442	0.0012302	0.30448	0.00011546	3.5486	0.0013457	379.20820296584327	35.509	0.76788	35.509	35.398	36.166	0					43	15	5	0	0	0	0.67394	1	13700	13700		37.159	3.6435	1	6699300	+		25791	17507	17224	17286	26136	26136					0.013824490520050858
LSPTFLCVGH	10	Unmodified	_LSPTFLCVGH_					0	0	0			REV__NUP205|p.A1778G|1|0.3|ENSG00000155561|chr7:135638624-135638624|C/G|missense_variant	REV__NUP205|p.A1778G|1|0.3|ENSG00000155561|chr7:135638624-135638624|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2765502929688	2	537.276052	1072.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.658	1	13.658	13.158	14.158	0								0	0	0	0.27575	1	3375	3375		42.396	0	1		+		25792	21314	17225	17287	26137	26137					0.004184005711749705
LSPTTIETAM	10	Unmodified	_LSPTTIETAM_					0	0	0		ENSG00000138378|ENST00000392320|STAT4	ENSG00000138378|ENST00000392320|STAT4	ENSG00000138378|ENST00000392320|STAT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.27099609375	2	532.270632	1062.52671	1.719	0.00091497	-0.29312	-0.00015602	1.4259	0.00075895	532.2701973220287	32.783	0.29222	32.783	32.639	32.932	0					24	7	5	0	0	0	0.24256	1	12474	12474		74.255	1.3758	1	690170			25793	4250	17226	17288	26138	26138					-0.0020504659376001655
LSPVHVWS	8	Unmodified	_LSPVHVWS_					0	0	0		ENST00000528907.5_1_11:62445692-62446470:-|nuORF	ENST00000528907.5_1_11:62445692-62446470:-|nuORF	ENST00000528907.5_1_11:62445692-62446470:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7500305175781	2	462.750527	923.486502	2.575	0.0011916	-0.87501	-0.00040491	1.7	0.00078666	462.7503239740542	37.493	0.63937	37.493	37.383	38.022	0					22	13	2	0	0	0	0.44433	1	14654	14654		65.803	19.037	1	582690			25794	10404	17227	17289	26139	26139					0.021698195886074245
LSPVRAPTT	9	Unmodified	_LSPVRAPTT_					0	0	0			REV__ENST00000375114.7_1_20:32581481-32619357:+|nuORF	REV__ENST00000375114.7_1_20:32581481-32619357:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.27642822265625	2	471.274367	940.53418	-0.60381	-0.00028456	0.059562	2.807E-05	-0.54425	-0.00025649	471.2745312069207	30.764	0.57259	30.764	30.596	31.169	0					27	13	3	0	0	0	0.2873	1	11106	11106		51.335	10.557	1	645300	+		25795	18703	17228	17290	26140	26140					0.061534737887996016
LSPVVCQLV	9	Carbamidomethyl (C)	_LSPVVC(Carbamidomethyl (C))QLV_	LSPVVC(1)QLV		LSPVVC(74)QLV		0	1	0			REV__PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	REV__PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.78924560546875	2	507.786253	1013.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.871	1	28.871	28.371	29.371	0								0	0	0	0.091069	1	10250	10250		74.255	19.479	1		+		25796	16389	17229	17291	26141	26141	584				0.05171571230960126
LSPWVSAN	8	Unmodified	_LSPWVSAN_					0	0	0			REV__ENST00000441302.6_1_3:39139729-39142014:-|nuORF	REV__ENST00000441302.6_1_3:39139729-39142014:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2259521484375	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.298	1	40.298	39.798	40.798	0								0	0	0	1.7419	1	15989	15989		38.806	6.8513	1		+		25797	14078	17230	17292	26142	26142					-0.0021045968238695423
LSPYLWEG	8	Unmodified	_LSPYLWEG_					0	0	0		ENST00000356731.9_1_5:179050473-179050569:-|nuORF	ENST00000356731.9_1_5:179050473-179050569:-|nuORF	ENST00000356731.9_1_5:179050473-179050569:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7950744628906	2	482.742368	963.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.374	1	30.374	29.874	30.874	0								0	0	0	1.7419	1	10335	10335		47.916	5.4411	1				25798	8810	17231	17293	26143	26143					-0.013013063681341919
LSQFKQLAL	9	Unmodified	_LSQFKQLAL_					0	0	0		FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant;ENSG00000162391|ENST00000302250|FAM151A	FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant	FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.8783264160156	3	349.878087	1046.61243	-0.074294	-2.5994E-05	0.10103	3.5348E-05	0.026735	9.3539E-06	349.87809882026573	24.038	0.34837	24.038	23.926	24.274	0					24	8	4	0	0	0	0.33044	1	7408	7408		46.457	0	1	3655600			25799	5456	17232	17294	26144	26144					0.09098906374038052
LSQFVPISV	9	Unmodified	_LSQFVPISV_					0	0	0			REV__EDEM2|p.M309I|1|0.25|ENSG00000088298|chr20:35126293-35126293|C/T|missense_variant	REV__EDEM2|p.M309I|1|0.25|ENSG00000088298|chr20:35126293-35126293|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2866516113281	2	495.286943	988.559333	2.8354	0.0014043	-2.5142	-0.0012453	0.32118	0.00015907	495.28582900346356	42.898	0.2973	42.898	42.725	43.023	0					20	9	3	0	0	0	0.095583	1	17148	17148		80.455	0	1	216800	+		25800	12764	17233	17295	26145	26145					0.06459528591381059
LSQGGGKIK	9	Unmodified	_LSQGGGKIK_					0	0	0		ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.26885986328125	2	444.269084	886.523616	-0.4797	-0.00021312	-0.050592	-2.2477E-05	-0.53029	-0.00023559	444.2691097440347	19.401	0.26466	19.401	19.293	19.557	0					10	5	3	0	0	0	0.17854	1	5999	5999		64.207	3.2353	1	868160			25801	7040	17234	17296	26146	26146					0.07581491134374119
LSQGLNII	8	Unmodified	_LSQGLNII_					0	0	0		ENST00000375678.7_3_20:31052756-31052930:-|nuORF	ENST00000375678.7_3_20:31052756-31052930:-|nuORF	ENST00000375678.7_3_20:31052756-31052930:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2578125	2	429.258185	856.501818	0.81919	0.00035165	-1.8088	-0.00077646	-0.98965	-0.00042481	429.2576618624588	33.922	0.16545	33.922	33.844	34.009	0					7	4	2	0	0	0	0.46013	1	12604	12604		64.207	2.0999	1	105640			25802	9033	17235	17297	26147	26147					0.06782686385793113
LSQGTKPDI	9	Unmodified	_LSQGTKPDI_					0	0	0			REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.76593017578125	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.424	1	28.424	27.924	28.924	0								0	0	0	0.3063	1	9163	9163		33.922	1.1092	1		+		25803	21774	17236	17298	26148	26148					0.032654636892857525
LSQHETSI	8	Unmodified	_LSQHETSI_					0	0	0			REV__HORMAD1|p.N235Ifs*12|1|0.22|ENSG00000143452|chr1:150706653-150706653|T/-|frameshift_variant	REV__HORMAD1|p.N235Ifs*12|1|0.22|ENSG00000143452|chr1:150706653-150706653|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7322082519531	2	457.732532	913.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.946	1	22.946	22.446	23.446	0								0	0	0	1.7419	1	7527	7527		111.65	8.8749	1		+		25804	15194	17237	17299	26149	26149					-0.009676823788936417
LSQHETSI	8	Unmodified	_LSQHETSI_					0	0	0			REV__HORMAD1|p.N235Ifs*12|1|0.22|ENSG00000143452|chr1:150706653-150706653|T/-|frameshift_variant	REV__HORMAD1|p.N235Ifs*12|1|0.22|ENSG00000143452|chr1:150706653-150706653|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.73223876953125	2	457.732532	913.45051	-0.65138	-0.00029816	0.076285	3.4918E-05	-0.57509	-0.00026324	457.7324961975229	22.836	0.21773	22.836	22.777	22.995	0					9	4	3	0	0	0	0.24425	1	7795	7795		111.65	8.8749	1	737890	+		25805	15194	17237	17299	26150	26150					-0.009676823788936417
LSQILMEQL	9	Unmodified	_LSQILMEQL_					0	0	0		ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant;ENSG00000128915|ENST00000261520|ICE2	ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant	ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7967529296875	2	537.796817	1073.57908	1.0201	0.0005486	-2.0245	-0.0010887	-1.0044	-0.00054015	537.797420394227	15.647	0.13166	15.647	15.57	15.701	0					8	5	2	0	0	0	0.28897	1	3562	3562		51.193	10.415	1	65959			25806	3570	17238	17300	26151	26151					0.04523536539818451
LSQIQLTLV	9	Unmodified	_LSQIQLTLV_					0	0	0			REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.8131103515625	2	507.813325	1013.6121	1.3024	0.00066135	-1.6919	-0.00085915	-0.38951	-0.0001978	507.81237733060027	25.102	0.166	25.102	24.996	25.162	0					9	3	3	0	0	0	0.35021	1	8760	8760		45.972	0	1	535340	+		25807	19632	17239	17301	26152	26152					0.10583486654172702
LSQKAEAQSL	10	Unmodified	_LSQKAEAQSL_					0	0	0		ENST00000318948.6_1_21:16340842-16386743:-|nuORF	ENST00000318948.6_1_21:16340842-16386743:-|nuORF	ENST00000318948.6_1_21:16340842-16386743:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.79296875	2	537.793121	1073.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.494	1	24.494	23.994	24.994	0								0	0	0	0.3598	1	7506	7506		41.427	2.1738	1				25808	8601	17240	17302	26153	26153					0.03784520263752711
LSQKQALE	8	Unmodified	_LSQKQALE_					0	0	0		FER|p.I432Lfs*16|1|0.32|ENSG00000151422|chr5:108946186-108946186|A/-|frameshift_variant;FER|p.K476Nfs*53|4|0.22|ENSG00000151422|chr5:108954821-108954821|A/-|frameshift_variant;nc|ENSG00000151422|P16591-2|FER;ENSG00000151422|ENST00000281092|FER	FER|p.I432Lfs*16|1|0.32|ENSG00000151422|chr5:108946186-108946186|A/-|frameshift_variant	FER|p.I432Lfs*16|1|0.32|ENSG00000151422|chr5:108946186-108946186|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.758544921875	2	458.758549	915.502546	0.17409	7.9865E-05	0.35623	0.00016342	0.53031	0.00024329	458.75869040647433	16.217	0.14575	16.217	16.118	16.264	0					5	3	2	0	0	0	0.23898	1	4340	4340		116.9	1.4095	1	140270			25809	4961	17241	17303	26154	26154					0.041414810348555875
LSQLLFLNQ	9	Unmodified	_LSQLLFLNQ_					0	0	0		HEATR3|p.S501Lfs*12|1|0.3|ENSG00000155393|chr16:50086337-50086337|T/-|frameshift_variant	HEATR3|p.S501Lfs*12|1|0.3|ENSG00000155393|chr16:50086337-50086337|T/-|frameshift_variant	HEATR3|p.S501Lfs*12|1|0.3|ENSG00000155393|chr16:50086337-50086337|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3133544921875	2	538.310949	1074.60735	3.3782	0.0018185	0.47658	0.00025655	3.8547	0.0020751	538.311492406939	44.036	0.25074	44.036	43.917	44.168	0					26	10	4	0	0	0	0.30951	1	17616	17616		49.442	3.4896	1	334170			25810	11179	17242	17304	26155	26155					0.0730260251141317
LSQLTAQGP	9	Unmodified	_LSQLTAQGP_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.75067138671875	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.728	1	33.728	33.228	34.228	0								0	0	0	0.14033	1	12498	12498		62.107	3.3255	1		+		25811	15771	17243	17305	26156	26156					0.026691945178072274
LSQPESPVL	9	Unmodified	_LSQPESPVL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;CROCC|p.Q588Pfs*15|1|0.33|ENSG00000058453|chr1:16940044-16940045|-/CC|frameshift_variant	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.26568603515625	2	485.266207	968.517862	0.65854	0.00031957	-0.9541	-0.00046299	-0.29557	-0.00014343	485.26588766508206	31.323	0.94163	31.323	31.169	32.111	0					64	23	6	0	0	0	0.33044	1	11636	11636		47.657	9.8458	1	33390000			25812	1303	17244	17306	26157	26157					0.032343478320512986
LSQPKNSLI	9	Unmodified	_LSQPKNSLI_					0	0	0			REV__ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant	REV__ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2950744628906	2	500.295299	998.576045	-0.16306	-8.1579E-05	-0.016027	-8.0182E-06	-0.17909	-8.9597E-05	500.2953145415633	34.254	0.40061	34.254	34.132	34.533	0					20	10	2	0	0	0	0.25716	1	12800	12800		54.776	5.3348	1	1608300	+		25813	15352	17245	17307	26158	26158					0.07670029477333173
LSQRTEPTK	9	Unmodified	_LSQRTEPTK_					0	0	0			REV__ENST00000360870.9_3_2:179612299-179612374:-|nuORF	REV__ENST00000360870.9_3_2:179612299-179612374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2935791015625	2	530.293288	1058.57202	-1.2077	-0.00064043	2.8401	0.0015061	1.6324	0.00086566	530.2949595789853	18.755	0.20706	18.755	18.638	18.845	0					10	5	3	0	0	0	0.11898	1	4943	4943		75.043	2.1641	1	346530	+		25814	18561	17246	17308	26159	26159					0.04507939983614051
LSQSGTWI	8	Unmodified	_LSQSGTWI_					0	0	0			REV__PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant	REV__PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.2322998046875	2	446.232168	890.449782	-1.1672	-0.00052085	0.98889	0.00044128	-0.17832	-7.9571E-05	446.2326153563543	40.366	0.46994	40.366	40.125	40.595	0					42	26	2	0	0	0	0.72381	1	13573	13573		30.504	1.3541	1	278780	+		25815	21382	17247	17309	26160	26160					0.0001752297204120623
LSQSLHLQF	9	Unmodified	_LSQSLHLQF_					0	0	0		ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.197509765625	3	358.197708	1071.57129	1.4323	0.00051305	-1.8101	-0.00064838	-0.37779	-0.00013532	358.1969587871279	24.849	0.21073	24.849	24.746	24.957	0					10	4	3	0	0	0	0.2873	1	8760	8760		58.23	0	1	1315700			25816	10418	17248	17310	26161	26161					0.03837145334568959
LSQTGSLVSA	10	Unmodified	_LSQTGSLVSA_					0	0	0		nc|ENSG00000041515|Q9Y6X6-2|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-2|MYO16	nc|ENSG00000041515|Q9Y6X6-2|MYO16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7611083984375	2	481.761289	961.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.81	1	13.81	13.31	14.31	0								0	0	0	0.37602	1	3227	3227		37.812	0	1				25817	1194	17249	17311	26162	26162					0.025731598266588662
LSQTNLVLV	9	Unmodified	_LSQTNLVLV_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.79736328125	2	493.797675	985.580796	0.6417	0.00031687	-1.0407	-0.00051389	-0.39899	-0.00019702	493.79717037079706	38.355	0.264	38.355	38.277	38.541	0					14	9	2	0	0	0	0.36892	1	15056	15056		44.377	4.319	1	195180	+		25818	14476	17250	17312	26163	26163					0.08742913620096715
LSQVAKEI	8	Unmodified	_LSQVAKEI_					0	0	0			REV__ENST00000602490.1_1_1:183599580-183599799:-|nuORF	REV__ENST00000602490.1_1_1:183599580-183599799:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2632751464844	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.014	1	26.014	25.514	26.514	0								0	0	0	1.7419	1	9137	9137		104.75	0	1		+		25819	15832	17251	17313	26164	26164					0.06458669040239329
LSQWASSVSPL	11	Unmodified	_LSQWASSVSPL_					0	0	0		ENST00000514442.5_1_5:149772876-149773050:+|nuORF	ENST00000514442.5_1_5:149772876-149773050:+|nuORF	ENST00000514442.5_1_5:149772876-149773050:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.2081298828125	3	392.208273	1173.60299	-0.1579	-6.1931E-05	0.081828	3.2093E-05	-0.076076	-2.9837E-05	392.2082596499574	27.748	0.30657	27.748	27.658	27.964	0					11	7	2	0	0	0	0.67178	1	9127	9127		47.228	47.228	1	389330			25820	10255	17252	17314	26165	26165					0.023130932978574492
LSRAEAAGL	9	Unmodified	_LSRAEAAGL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.250732421875	2	444.250892	886.48723	-0.4867	-0.00021622	-0.0075212	-3.3413E-06	-0.49423	-0.00021956	444.250815544887	25.781	0.18071	25.781	25.608	25.789	0					7	4	2	0	0	0	0.35021	1	8242	8242		45.972	3.5761	1	93456			25821	4489	17253	17315	26166	26166					0.03944614237661881
LSRATEQL	8	Unmodified	_LSRATEQL_					0	0	0		ENSG00000271321|ENST00000470691|CTAGE6;ENSG00000271079|ENST00000420911|CTAGE15	ENSG00000271321|ENST00000470691|CTAGE6	ENSG00000271321|ENST00000470691|CTAGE6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.255859375	2	459.256174	916.497795	-0.66856	-0.00030704	-2.3151	-0.0010632	-2.9837	-0.0013703	459.2560867639764	27.7	0.3493	27.7	27.529	27.879	0					20	8	4	0	0	0	0.49216	1	9677	9677		60.972	4.2509	1	1028800			25822	8084	17254	17316	26167	26167					0.036205968920739906
LSRAYDGTTY	10	Unmodified	_LSRAYDGTTY_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.7739868164062	2	573.774928	1145.5353	-0.11847	-6.7972E-05	-2.189	-0.001256	-2.3075	-0.001324	573.7738953714236	11.439	0.09604	11.439	11.397	11.493	0					8	4	3	0	0	0	0.60076	1	2201	2201		34.173	7.4796	1	200320			25823	6132	17255	17317	26168	26168					-0.03164356632964882
LSRCVTLGCN	10	Unmodified	_LSRCVTLGCN_					0	0	0		ENST00000577646.5_3_17:38465473-38487137:+|nuORF	ENST00000577646.5_3_17:38465473-38487137:+|nuORF	ENST00000577646.5_3_17:38465473-38487137:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2622680664062	2	533.262619	1064.51068	0.2894	0.00015432	-1.9709	-0.001051	-1.6815	-0.00089668	533.2618813449726	30.807	0.31782	30.807	30.664	30.982	0					10	7	2	0	0	0	0.65051	1	11542	11542		28.081	0.19925	1	77282			25824	10842	17256	17318	26169	26169					-0.01899031311654653
LSRELAIA	8	Unmodified	_LSRELAIA_					0	0	0			REV__ENSG00000178394|ENST00000323865|HTR1A	REV__ENSG00000178394|ENST00000323865|HTR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7634582519531	2	436.763635	871.512717	-0.41483	-0.00018118	-0.23593	-0.00010304	-0.65075	-0.00028422	436.7635866580465	32.534	0.12203	32.534	32.46	32.582	0					5	3	2	0	0	0	0.48092	1	12382	12382		62.107	0	1	129100	+		25825	16733	17257	17319	26170	26170					0.07182088760077932
LSRENECLRKT	11	Unmodified	_LSRENECLRKT_					0	0	0		LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;nc|ENSG00000133739|Q9C099-2|LRRCC1;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.23907470703125	3	450.238237	1347.69288	0.87604	0.00039443	0.84297	0.00037954	1.719	0.00077396	450.23874207806574	24.415	1.2026	24.415	23.666	24.869	0					72	24	4	0	0	0	0.59078	1	8387	8387		37.6	1.072	1	1609500			25826	3868	17258	17320	26171	26171					0.032943996347285065
LSREPGFVF	9	Unmodified	_LSREPGFVF_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.284423828125	2	526.282192	1050.54983	1.6278	0.00085671	2.0181	0.0010621	3.6459	0.0019188	526.2835624902618	43.519	0.65063	43.519	43.283	43.934	0					27	16	3	0	0	0	0.14734	1	17412	17412		68.485	5.5063	1	87284	+		25827	17387	17259	17321	26172	26172					0.026577603058512977
LSREVESLL	9	Unmodified	_LSREVESLL_					0	0	0		nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF;nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-3|DQX1	nc|ENSG00000144045|Q8TE96-3|DQX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.297119140625	2	523.298039	1044.58152	0.088319	4.6217E-05	-1.3156	-0.00068847	-1.2273	-0.00064225	523.2971376126993	39.339	0.27639	39.339	39.125	39.401	0					19	9	3	0	0	0	0.16806	1	14956	14956		65.465	8.7443	1	298790			25828	4598	17260	17322	26173	26173					0.06101708269147821
LSRFENHRRQI	11	Unmodified	_LSRFENHRRQI_					0	0	0			REV__ENSG00000173588|ENST00000397809|CEP83	REV__ENSG00000173588|ENST00000397809|CEP83	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.9349365234375	3	485.935769	1454.78548	-0.55978	-0.00027202	-1.4903	-0.00072417	-2.05	-0.00099619	485.93519117218676	28.269	0.41693	28.269	28.109	28.526	0					10	8	2	0	0	0	0.59204	1	10235	10235		37.508	18.245	1	401930	+		25829	16521	17261	17323	26174	26174					0.07627665483164492
LSRFVQRVL	9	Unmodified	_LSRFVQRVL_					0	0	0			REV__ENST00000593183.2_1_19:16013215-16014022:-|nuORF	REV__ENST00000593183.2_1_19:16013215-16014022:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2328796386719	3	373.232864	1116.67676	0.84192	0.00031423	-0.31768	-0.00011857	0.52424	0.00019566	373.2327560627557	21.717	0.51125	21.717	21.608	22.119	0					19	10	4	0	0	0	0.47038	1	7228	7228		28.081	5.5018	1	2036400	+		25830	20547	17262	17324	26175	26175					0.12309106250836521
LSRGPARSRAG	11	Unmodified	_LSRGPARSRAG_					0	0	0			REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5801696777344	3	376.551256	1126.63194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.145	1	15.145	14.645	15.645	0								0	0	0	0.39785	1	3928	3928		37.6	5.9656	1		+		25831	19327	17263	17325	26176	26176					0.07368675437510319
LSRGSSPV	8	Unmodified	_LSRGSSPV_					0	0	0		DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant	DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant	DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.7244873046875	2	401.72451	801.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.523	1	19.523	19.023	20.023	0								0	0	0	1.7419	1	5318	5318		24.203	2.2429	1				25832	738	17264	17326	26177	26177					0.025806561748481727
LSRHSDAPLR	10	Unmodified	_LSRHSDAPLR_					0	0	0		ENST00000309311.6_1_19:3976399-3976465:-|nuORF	ENST00000309311.6_1_19:3976399-3976465:-|nuORF	ENST00000309311.6_1_19:3976399-3976465:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.3189697265625	2	576.317628	1150.6207	1.8143	0.0010456	0.76399	0.0004403	2.5782	0.0014859	576.318113830576	34.866	0.2776	34.866	34.761	35.038	0					16	8	3	0	0	0	0.36647	1	13475	13475		59.931	5.1545	1	508360			25833	8537	17265	17327	26178	26178					0.05141853343366165
LSRISLTQAG	10	Unmodified	_LSRISLTQAG_					0	0	0		PSMD5|p.G278Wfs*8|2|0.31|ENSG00000095261|chr9:120824668-120824669|-/A|frameshift_variant;ENSG00000095261|ENST00000210313|PSMD5	PSMD5|p.G278Wfs*8|2|0.31|ENSG00000095261|chr9:120824668-120824669|-/A|frameshift_variant	PSMD5|p.G278Wfs*8|2|0.31|ENSG00000095261|chr9:120824668-120824669|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.8070678710938	2	523.303655	1044.59276	3.4144	0.0017867	0.60914	0.00031876	4.0235	0.0021055	523.3039447735853	41.728	0.15266	41.728	41.622	41.775	0					8	4	2	0	0	0	0.19191	1	16617	16617		80.455	8.5771	1	120070			25834	1897	17266	17328	26179	26179					0.07224530363282611
LSRLQPVL	8	Unmodified	_LSRLQPVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2945861816406	2	463.295102	924.575651	-0.14414	-6.6781E-05	-0.46356	-0.00021477	-0.6077	-0.00028155	463.2948717323044	25.316	0.16934	25.316	25.256	25.426	0					5	3	2	0	0	0	0.49216	1	8979	8979		60.972	5.4677	1	204540			25835	5547	17267	17329	26180	26180					0.1103465454812067
LSRLTYEVN	9	Unmodified	_LSRLTYEVN_					0	0	0			REV__ENSG00000151229|ENST00000280871|SLC2A13	REV__ENSG00000151229|ENST00000280871|SLC2A13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7974243164062	2	547.795663	1093.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.358	1	45.358	44.858	45.858	0								0	0	0	0.27939	1	18164	18164		39.253	2.8061	1		+		25836	15468	17268	17330	26181	26181					0.03372824126381602
LSRLVASSPV	10	Unmodified	_LSRLVASSPV_					0	0	0			REV__ENST00000541357.6_1_14:74360502-74371669:+|nuORF	REV__ENST00000541357.6_1_14:74360502-74371669:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.5415344238281	3	343.541475	1027.60259	0.50633	0.00017394	-0.64251	-0.00022073	-0.13618	-4.6784E-05	343.5413137820657	26.531	0.5256	26.531	26.235	26.76	0					19	12	3	0	0	0	0.36647	1	9155	9155		59.931	4.8469	1	2158700	+		25837	14254	17269	17331	26182	26182					0.08989718368638933
LSRMNVCLG	9	Unmodified	_LSRMNVCLG_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.75335693359375	2	496.75443	991.494306	-0.76366	-0.00037935	-1.3036	-0.00064757	-2.0673	-0.0010269	496.7537270677524	15.954	0.1639	15.954	15.849	16.013	0					5	3	2	0	0	0	0.59802	1	4475	4475		21.96	0.25755	1	733870	+		25838	15007	17270	17332	26183	26183					-0.00178112477783543
LSRPDQSPVV	10	Unmodified	_LSRPDQSPVV_					0	0	0		ENST00000487676.1_1_6:32629904-32629961:-|nuORF	ENST00000487676.1_1_6:32629904-32629961:-|nuORF	ENST00000487676.1_1_6:32629904-32629961:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.536376953125	3	366.536501	1096.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.4	1	17.4	16.9	17.9	0								0	0	0	0.37293	1	5013	5013		38.754	8.1847	1				25839	10037	17271	17333	26184	26184					0.04324226500648365
LSRPPGPSL	9	Unmodified	_LSRPPGPSL_					0	0	0		nc|ENSG00000158321|Q8WXX7-5|AUTS2;nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2;AUTS2|p.H1148Tfs*70|1|0.36|ENSG00000158321|chr7:70790657-70790657|C/-|frameshift_variant	nc|ENSG00000158321|Q8WXX7-5|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2682189941406	2	462.269084	922.523616	-2.4645	-0.0011393	1.015	0.00046921	-1.4495	-0.00067005	462.2695623254495	35.837	0.10579	35.837	35.801	35.906	0					5	4	2	0	0	0	0.5741	1	12807	12807		24.519	0.31644	1	44111			25840	5255	17272	17334	26185	26185					0.0592549113438281
LSRQAGVK	8	Unmodified	_LSRQAGVK_					0	0	0			REV__nc|ENSG00000142606|Q495T6-3|MMEL1	REV__nc|ENSG00000142606|Q495T6-3|MMEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7621154785156	2	429.761426	857.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.225	1	31.225	30.725	31.725	0								0	0	0	1.7419	1	10725	10725		11.511	1.3263	1		+		25841	15154	17273	17335	26186	26186					0.07384624337180412
LSRQKRSQL	9	Unmodified	_LSRQKRSQL_					0	0	0		ENST00000453466.1_1_7:102939135-102952715:+|nuORF	ENST00000453466.1_1_7:102939135-102952715:+|nuORF	ENST00000453466.1_1_7:102939135-102952715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.5596618652344	3	372.55964	1114.65709	0.78476	0.00029237	1.9825	0.00073861	2.7673	0.001031	372.56031354221784	18.476	0.56226	18.476	18.254	18.816	0					34	13	4	0	0	0	0.24095	1	5381	5381		54.722	0	1	3171200			25842	9668	17274	17336	26187	26187					0.1043473024008108
LSRSGGVR	8	Unmodified	_LSRSGGVR_					0	0	0			REV__ENST00000399083.1_1_17:19061550-19062206:-|nuORF	REV__ENST00000399083.1_1_17:19061550-19062206:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.2424011230469	2	416.243401	830.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.707	1	16.707	16.207	17.207	0								0	0	0	1.7419	1	4582	4582		29.15	4.9468	1		+		25843	18930	17275	17337	26188	26188					0.050231671603341965
LSRSLGAVVF	10	Unmodified	_LSRSLGAVVF_					0	0	0		ENSG00000104147|ENST00000220514|OIP5	ENSG00000104147|ENST00000220514|OIP5	ENSG00000104147|ENST00000220514|OIP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.2097473144531	3	350.209836	1047.60768	0.32973	0.00011548	-0.60116	-0.00021053	-0.27143	-9.5058E-05	350.2096537682801	30.201	0.32512	30.201	30.059	30.384	0					14	7	3	0	0	0	0.63073	1	11256	11256		35.152	12.572	1	270030			25844	2270	17276	17338	26189	26189					0.08578022231267823
LSRSRPAQQPR	11	Unmodified	_LSRSRPAQQPR_					0	0	0			REV__nc|ENSG00000079435|Q05469-2|LIPE	REV__nc|ENSG00000079435|Q05469-2|LIPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.5818786621094	3	432.581215	1294.72182	0.73496	0.00031793	0.85034	0.00036784	1.5853	0.00068577	432.581614341147	22.809	0.1754	22.809	22.726	22.902	0					11	4	4	0	0	0	0.65378	1	7477	7477		32.034	2.4834	1	652080	+		25845	13284	17277	17339	26190	26190					0.0862430504605527
LSRSTVTDE	9	Unmodified	_LSRSTVTDE_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2543640136719	2	504.253828	1006.4931	-0.39241	-0.00019787	0.67198	0.00033885	0.27957	0.00014098	504.25433502724735	38.602	0.21852	38.602	38.493	38.712	0					7	4	2	0	0	0	0.35045	1	15200	15200		45.952	5.3793	1	156280	+		25846	16869	17278	17340	26191	26191					-0.009883320413223373
LSRTAGPT	8	Unmodified	_LSRTAGPT_					0	0	0			REV__ENSG00000166278|ENST00000299367|C2	REV__ENSG00000166278|ENST00000299367|C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.7244567871094	2	401.72451	801.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.426	1	19.426	18.926	19.926	0								0	0	0	1.7419	1	5024	5024		30.504	0	1		+		25847	16104	17279	17341	26192	26192					0.025806561748481727
LSRTPAAE	8	Unmodified	_LSRTPAAE_					0	0	0		NPTX1|p.R192Gfs*14|1|0.11|ENSG00000171246|chr17:80475590-80475590|G/-|frameshift_variant;ENSG00000171246|ENST00000306773|NPTX1	NPTX1|p.R192Gfs*14|1|0.11|ENSG00000171246|chr17:80475590-80475590|G/-|frameshift_variant	NPTX1|p.R192Gfs*14|1|0.11|ENSG00000171246|chr17:80475590-80475590|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.72991943359375	2	422.729792	843.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.806	1	25.806	25.306	26.306	0								0	0	0	1.7419	1	8259	8259		37.159	5.2042	1				25848	6288	17280	17342	26193	26193					0.017046388292783377
LSRTRRFE	8	Unmodified	_LSRTRRFE_					0	0	0			REV__ENST00000464373.1_1_1:1693389-1696851:-|nuORF	REV__ENST00000464373.1_1_1:1693389-1696851:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.803466796875	2	532.801614	1063.58868	2.3506	0.0012524	1.0074	0.00053676	3.358	0.0017891	532.8022705603236	26.532	0.40763	26.532	26.368	26.775	0					22	9	3	0	0	0	0.26534	1	9159	9159		94.006	0.81096	1	1486400	+		25849	12877	17281	17343	26194	26194					0.05942485660239072
LSRVLKGGSV	10	Unmodified	_LSRVLKGGSV_					0	0	0		ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant;ALK|p.Q908Rfs*3|1|0.19|ENSG00000171094|chr2:29228977-29228977|G/-|frameshift_variant;ALK|p.W915Gfs*24|1|0.42|ENSG00000171094|chr2:29228957-29228957|C/-|frameshift_variant;ENSG00000171094|ENST00000389048|ALK	ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant	ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.21514892578125	3	339.213469	1014.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.74	1	37.74	37.24	38.24	0								0	0	0	0.39264	1	14778	14778		32.751	9.2278	1				25850	117	17282	17344	26195	26195					0.11185424605582739
LSRVSGRKY	9	Unmodified	_LSRVSGRKY_					0	0	0			REV__ENSG00000277363|ENST00000617146|SRCIN1	REV__ENSG00000277363|ENST00000617146|SRCIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.3136596679688	2	533.311815	1064.60908	3.3948	0.0018105	-0.10017	-5.3422E-05	3.2946	0.001757	533.3117036667331	42.914	0.37617	42.914	42.802	43.178	0					30	11	4	0	0	0	0.15163	1	17135	17135		60.972	20.399	1	2271800	+		25851	17834	17283	17345	26196	26196					0.07935656320046292
LSRYLRGL	8	Unmodified	_LSRYLRGL_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.298828125	2	489.298176	976.581799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.459	1	34.459	33.959	34.959	0								0	0	0	1.7419	1	13284	13284		45.972	0	1		+		25852	14716	17284	17346	26197	26197					0.09257172779666689
LSRYRGLWT	9	Unmodified	_LSRYRGLWT_					0	0	0			REV__ENST00000258412.7_1_2:219139241-219139346:-|nuORF	REV__ENST00000258412.7_1_2:219139241-219139346:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.320068359375	2	576.31964	1150.62473	0.93831	0.00054076	-1.6205	-0.0009339	-0.68215	-0.00039314	576.3186958389333	34.629	0.10391	34.629	34.558	34.662	0					7	4	2	0	0	0	0.35021	1	11326	11326		45.972	4.5456	1	81893	+		25853	17998	17285	17347	26198	26198					0.055439428370846144
LSSAAALIP	9	Unmodified	_LSSAAALIP_					0	0	0		CADM1|p.F33S|1|0.09|ENSG00000182985|chr11:115504297-115504297|A/G|missense_variant	CADM1|p.F33S|1|0.09|ENSG00000182985|chr11:115504297-115504297|A/G|missense_variant	CADM1|p.F33S|1|0.09|ENSG00000182985|chr11:115504297-115504297|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.7521667480469	2	421.752736	841.490919	-1.22	-0.00051454	0.77149	0.00032538	-0.44852	-0.00018916	421.75319722393175	33.294	0.15564	33.294	33.21	33.366	0					8	6	2	0	0	0	0.49003	1	11181	11181		33.516	8.0654	1	28622			25854	356	17286	17348	26199	26199					0.06383284011508294
LSSAAPATI	9	Unmodified	_LSSAAPATI_					0	0	0			REV__ENST00000357155.1_1_1:109837903-109840046:-|nuORF	REV__ENST00000357155.1_1_1:109837903-109840046:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.73980712890625	2	415.734543	829.454533	1.0442	0.00043409	2.002	0.00083232	3.0462	0.0012664	415.7360025237881	31.129	0.54652	31.129	30.955	31.501	0					25	13	3	0	0	0	0.062676	1	11406	11406		90.777	5.4172	1	376240	+		25855	18530	17287	17349	26200	26200					0.03298407114800739
LSSALPFVQ	9	Unmodified	_LSSALPFVQ_					0	0	0			REV__ZBTB2|p.F476Lfs*3|1|0.24|ENSG00000181472|chr6:151365638-151365638|A/-|frameshift_variant	REV__ZBTB2|p.F476Lfs*3|1|0.24|ENSG00000181472|chr6:151365638-151365638|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.27325439453125	2	481.271293	960.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.416	1	36.416	35.916	36.916	0								0	0	0	0.19749	1	14151	14151		51.335	16.183	1		+		25856	16849	17288	17350	26201	26201					0.04618955557270965
LSSALSIGLVL	11	Unmodified	_LSSALSIGLVL_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8348999023438	2	536.834257	1071.65396	1.8554	0.00099603	-0.80385	-0.00043153	1.0515	0.0005645	536.8338826327713	34.501	0.28456	34.501	34.373	34.657	0					12	7	2	0	0	0	0.72154	1	13312	13312		25.574	1.0549	1	211250	+		25857	21270	17289	17351	26202	26202					0.12100042342694906
LSSAMANVVF	10	Unmodified	_LSSAMANVVF_					0	0	0		ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000473633.1_1_7:150838782-150841027:+|nuORF	ENST00000473633.1_1_7:150838782-150841027:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7682495117188	2	519.76806	1037.52157	1.6157	0.00083979	-1.031	-0.0005359	0.58468	0.0003039	519.7674744039429	42.299	0.16969	42.299	42.214	42.383	0					10	4	3	0	0	0	0.49411	1	16881	16881		45.972	3.108	1	254300			25858	3863	17290	17352	26203	26203					0.004306943342498926
LSSARGRAP	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LSSARGRAP_					1	0	0		ENST00000398061.5_1_21:45379519-45387977:+|nuORF	ENST00000398061.5_1_21:45379519-45387977:+|nuORF	ENST00000398061.5_1_21:45379519-45387977:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.76483154296875	2	478.76724	955.519927	-0.31928	-0.00015286	-3.8037	-0.0018211	-4.123	-0.001974	478.7653326191369	28.132	0.17841	28.132	28.032	28.21	0					8	4	3	0	0	0	0.35021	1	9298	9298		45.972	7.1661	1	55474			25859	9227	17291	17353	26204	26204					0.04038821360506972
LSSARLPPE	9	Unmodified	_LSSARLPPE_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2728271484375	2	485.271824	968.529095	0.84707	0.00041106	1.2577	0.00061032	2.1047	0.0010214	485.2727617401118	42.664	0.12483	42.664	42.621	42.746	0					5	3	2	0	0	0	0.27249	1	17053	17053		52.937	1.6012	1	32572			25860	5427	17292	17354	26205	26205					0.043571699261860886
LSSASALVPA	10	Unmodified	_LSSASALVPA_					0	0	0		ENST00000449733.7_1_9:124043766-124044726:+|nuORF;ENST00000373823.7_3_9:124043766-124064391:+|nuORF	ENST00000449733.7_1_9:124043766-124044726:+|nuORF	ENST00000449733.7_1_9:124043766-124044726:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2606201171875	2	458.260925	914.507297	0.058751	2.6923E-05	-0.66968	-0.00030689	-0.61092	-0.00027996	458.2605886311762	22.766	0.19671	22.766	22.694	22.89	0					14	6	3	0	0	0	0.30737	1	6478	6478		66.429	2.222	1	343360			25861	9002	17293	17355	26206	26206					0.04662365177614447
LSSAWNLTL	9	Unmodified	_LSSAWNLTL_					0	0	0		ENST00000532710.5_1_11:4116045-4116234:+|nuORF	ENST00000532710.5_1_11:4116045-4116234:+|nuORF	ENST00000532710.5_1_11:4116045-4116234:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7768249511719	2	502.7742	1003.53385	-2.0563	-0.0010339	2.0949	0.0010533	0.038586	1.94E-05	503.2759644223867	28.47	0.36865	28.47	28.27	28.639	0					18	9	3	0	0	0	0.28897	1	9412	9412		27.882	0	1	124010			25862	10453	17294	17356	26207	26207					0.032220540689422705
LSSDDANVL	9	Unmodified	_LSSDDANVL_					0	0	0		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2294616699219	2	467.229822	932.445091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.023	1	20.023	19.523	20.523	0								0	0	0	0.10826	1	5553	5553		69.628	1.1429	1				25863	5182	17295	17357	26208	26208					-0.023834059613932368
LSSDKFIPL	9	Unmodified	_LSSDKFIPL_					0	0	0		tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2921447753906	2	510.292225	1018.5699	-0.44337	-0.00022625	0.23097	0.00011786	-0.2124	-0.00010839	510.2924866304217	33.475	0.20981	33.475	33.361	33.571	0					18	8	3	0	0	0	0.2873	1	11222	11222		51.335	7.2187	1	186010			25864	22823	17296	17358	26209	26209					0.061355112458159056
LSSEISNIDK	10	Unmodified	_LSSEISNIDK_					0	0	0			REV__ENST00000512630.5_1_4:143007384-143094853:-|nuORF	REV__ENST00000512630.5_1_4:143007384-143094853:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.2898559570312	2	553.290411	1104.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.089	1	31.089	30.589	31.589	0								0	0	0	0.38475	1	9965	9965		35.152	6.0025	1		+		25865	19886	17297	17359	26210	26210					0.018167966812598024
LSSFAEKHY	9	Unmodified	_LSSFAEKHY_					0	0	0		ENST00000375290.6_3_9:98215758-98232201:-|nuORF;PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2689819335938	2	541.269281	1080.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.062	1	32.062	31.562	32.562	0								0	0	0	0.29421	1	10676	10676		44.377	5.1244	1				25866	7113	17298	17360	26211	26211					-0.01303133936426093
LSSGALDIK	9	Unmodified	_LSSGALDIK_					0	0	0			REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2553405761719	2	452.260925	902.507297	-0.41114	-0.00018594	-0.3745	-0.00016937	-0.78564	-0.00035531	452.2605449085572	29.017	0.56429	29.017	28.86	29.424	0					23	11	4	0	0	0	0.41113	1	10691	10691		40.778	0	1	2708500	+		25867	15326	17299	17361	26212	26212					0.05214365177619129
LSSHNLLVF	9	Unmodified	_LSSHNLLVF_					0	0	0			REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2884521484375	2	515.290017	1028.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.725	1	22.725	22.225	23.225	0								0	0	0	0.2591	1	6818	6818		42.396	8.2236	1		+		25868	15155	17300	17362	26213	26213					0.05234046822897653
LSSHPLAI	8	Unmodified	_LSSHPLAI_					0	0	0		ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000533402.5_1_1:201459302-201459740:-|nuORF	ENST00000533402.5_1_1:201459302-201459740:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2447814941406	2	419.245078	836.475603	0.90478	0.00037932	-0.84896	-0.00035592	0.055818	2.3402E-05	419.24482491489994	38.534	0.2412	38.534	38.472	38.713	0					11	8	2	0	0	0	0.4723	1	15130	15130		62.978	5.5258	1	108480			25869	10395	17301	17363	26214	26214					0.050824172143165924
LSSHQNSL	8	Unmodified	_LSSHQNSL_					0	0	0		UBAP2|p.S710N|1|0.5|ENSG00000137073|chr9:33932608-33932608|C/T|missense_variant	UBAP2|p.S710N|1|0.5|ENSG00000137073|chr9:33932608-33932608|C/T|missense_variant	UBAP2|p.S710N|1|0.5|ENSG00000137073|chr9:33932608-33932608|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.224609375	2	443.224874	884.435195	-0.29076	-0.00012887	0.13321	5.9042E-05	-0.15755	-6.9831E-05	443.2247397756929	19.129	0.07991	19.129	19.086	19.166	0					4	2	2	0	0	0	0.58597	1	4899	4899		51.335	5.3632	1	93972			25870	23084	17302	17364	26215	26215					-0.01164549176098717
LSSINAIMK	9	Unmodified	_LSSINAIMK_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;FSIP2|p.V5491I|1|0.42|ENSG00000188738|chr2:185805777-185805777|G/A|missense_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.77801513671875	2	488.778428	975.542302	3.5081	0.0017147	-3.6685	-0.0017931	-0.16042	-7.8409E-05	488.77668147949544	31.285	0.10766	31.285	31.254	31.361	0					6	4	2	0	0	0	0.35021	1	10365	10365		45.972	1.8554	1	43150			25871	7269	17303	17365	26216	26216					0.05355284713925812
LSSIRAVIK	9	Unmodified	_LSSIRAVIK_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8214111328125	2	493.821484	985.628415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.209	1	16.209	15.709	16.709	0								0	0	0	0.37233	1	3794	3794		19.104	1.7386	1				25872	2585	17304	17366	26217	26217					0.13502612610932374
LSSIVLAGTG	10	Unmodified	_LSSIVLAGTG_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2682800292969	2	459.26875	916.522947	0.035645	1.6371E-05	-1.3924	-0.00063951	-1.3568	-0.00062314	459.2681307079059	30.511	0.33122	30.511	30.335	30.667	0					14	8	3	0	0	0	0.17732	1	10408	10408		82.241	2.5279	1	254220	+		25873	14966	17305	17367	26218	26218					0.06134651694662807
LSSKEGLAL	9	Unmodified	_LSSKEGLAL_					0	0	0		tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7664489746094	2	459.26875	916.522947	0.69482	0.00031911	-2.8707	-0.0013184	-2.1759	-0.00099933	459.26815277395133	24.031	0.26345	24.031	23.857	24.12	0					20	8	4	0	0	0	0.25716	1	6990	6990		54.776	0	1	249740			25874	22754	17306	17368	26219	26219					0.061346516946514384
LSSKEVAIP	9	Unmodified	_LSSKEVAIP_					0	0	0		ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2763366699219	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.73	1	30.73	30.23	31.23	0								0	0	0	0.15451	1	11110	11110		58.782	0	1				25875	9049	17307	17369	26220	26220					0.06502938211713172
LSSKEVAIP	9	Unmodified	_LSSKEVAIP_					0	0	0		ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2762145996094	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.455	1	30.455	29.955	30.955	0								0	0	0	0.15451	1	10373	10373		58.782	0.55203	1				25876	9049	17307	17369	26221	26221					0.06502938211713172
LSSKKEVV	8	Unmodified	_LSSKKEVV_					0	0	0			REV__ENST00000240922.7_1_3:113437946-113438081:-|nuORF	REV__ENST00000240922.7_1_3:113437946-113438081:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.271240234375	2	445.271293	888.528032	0.59592	0.00026535	-1.2455	-0.0005546	-0.64961	-0.00028925	445.270666898768	22.809	0.17102	22.809	22.687	22.858	0					9	4	3	0	0	0	0.58597	1	7476	7476		51.335	7.2187	1	563010	+		25877	17930	17308	17370	26222	26222					0.07930955557287689
LSSLDTAHCRD	11	Unmodified	_LSSLDTAHCRD_					0	0	0		ENST00000326080.9_2_5:154217706-154230085:-|nuORF	ENST00000326080.9_2_5:154217706-154230085:-|nuORF	ENST00000326080.9_2_5:154217706-154230085:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.2828979492188	2	609.282594	1216.55064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.809	1	34.809	34.309	35.309	0								0	0	0	0.40876	1	13446	13446		35.152	3.6222	1				25878	8647	17309	17371	26223	26223					-0.04897813107436377
LSSLGCPKV	9	Unmodified	_LSSLGCPKV_					0	0	0		ENST00000361781.6_1_10:52220521-52220566:-|nuORF	ENST00000361781.6_1_10:52220521-52220566:-|nuORF	ENST00000361781.6_1_10:52220521-52220566:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.25	2	452.252046	902.489538	-0.022027	-9.962E-06	-3.5695	-0.0016143	-3.5915	-0.0016243	452.2502668249948	34.162	0.11223	34.162	34.114	34.227	0					7	4	2	0	0	0	0.51817	1	11163	11163		30.504	1.3541	1	75135			25879	8880	17310	17372	26224	26224					0.034393266511074216
LSSLKGGR	8	Unmodified	_LSSLKGGR_					0	0	0		ENST00000527368.5_1_11:66529588-66529918:+|nuORF	ENST00000527368.5_1_11:66529588-66529918:+|nuORF	ENST00000527368.5_1_11:66529588-66529918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.2475891113281	2	409.248152	816.481751	-1.4128	-0.00057818	0.92267	0.0003776	-0.49011	-0.00020058	409.2483377411105	21.488	0.066814	21.488	21.453	21.52	0					4	2	2	0	0	0	0.30437	1	6184	6184		82.305	13.518	1	68490			25880	10390	17311	17373	26225	26225					0.06616935445856598
LSSLLFPPA	9	Unmodified	_LSSLLFPPA_					0	0	0			REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF	REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7742919921875	2	472.776211	943.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.965	1	32.965	32.465	33.465	0								0	0	0	0.25856	1	11521	11521		42.474	6.0277	1		+		25881	20326	17312	17374	26226	26226					0.06384143562650024
LSSLLQVVIK	10	Unmodified	_LSSLLQVVIK_					0	0	0		ENST00000565135.1_1_14:52755809-52755905:+|nuORF	ENST00000565135.1_1_14:52755809-52755905:+|nuORF	ENST00000565135.1_1_14:52755809-52755905:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.2408447265625	3	367.241025	1098.70125	0.47239	0.00017348	-0.38262	-0.00014051	0.089772	3.2968E-05	367.2408897281212	26.201	0.55898	26.201	26.112	26.671	0					39	13	5	0	0	0	0.74091	1	8996	8996		20.03	4.0237	1	1599900			25882	10746	17313	17375	26227	26227					0.1558432161368728
LSSLPLTRTA	10	Unmodified	_LSSLPLTRTA_					0	0	0		ENST00000262958.3_1_19:3163029-3163218:+|nuORF	ENST00000262958.3_1_19:3163029-3163218:+|nuORF	ENST00000262958.3_1_19:3163029-3163218:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.545166015625	3	353.544996	1057.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.509	1	25.509	25.009	26.009	0								0	0	0	0.4201	1	8122	8122		14.694	0	1				25883	8312	17314	17376	26228	26228					0.08665701023096517
LSSLTHDAKQ	10	Unmodified	_LSSLTHDAKQ_					0	0	0			REV__nc|ENSG00000162819|Q5VW32-2|BROX	REV__nc|ENSG00000162819|Q5VW32-2|BROX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.29248046875	2	550.290745	1098.56694	1.6948	0.00093265	1.4912	0.00082057	3.186	0.0017532	550.2916126343152	31.66	1.5952	31.66	31.513	33.109	0					64	36	2	0	0	0	0.12896	1	11947	11947		90.37	5.209	1	44248000	+		25884	15843	17315	17377	26229	26229					0.02159636120995856
LSSLVKQHI	9	Unmodified	_LSSLVKQHI_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ABCA5|p.F1078Lfs*6|2|0.34|ENSG00000154265|chr17:69264816-69264816|A/-|frameshift_variant;ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	342.5437927246094	3	342.209836	1023.60768	0.21141	7.2347E-05	-1.6456	-0.00056313	-1.4342	-0.00049078	342.5437424326468	19.937	0.14623	19.937	19.851	19.997	0					8	4	2	0	0	0	0.61124	1	5257	5257		19.997	0.89325	1	155560			25885	7	17316	17378	26230	26230					0.09682022231265819
LSSNCVRQI	9	Unmodified	_LSSNCVRQI_					0	0	0		RPA1|p.C77R|1|0.13|ENSG00000132383|chr17:1844643-1844643|T/C|missense_variant	RPA1|p.C77R|1|0.13|ENSG00000132383|chr17:1844643-1844643|T/C|missense_variant	RPA1|p.C77R|1|0.13|ENSG00000132383|chr17:1844643-1844643|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2718200683594	2	510.268758	1018.52296	1.2009	0.00061277	2.7003	0.0013779	3.9012	0.0019907	510.2712097456115	14.92	0.21532	14.92	14.83	15.045	0					11	4	4	0	0	0	0.1115	1	3993	3993		76.774	0	1	847250			25886	22354	17317	17379	26231	26231					0.014443284230196696
LSSNFLYI	8	Unmodified	_LSSNFLYI_					0	0	0			REV__DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant	REV__DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7581481933594	2	478.758018	955.501483	0.019805	9.4819E-06	-0.61747	-0.00029562	-0.59767	-0.00028614	478.75775085450766	40.331	0.10157	40.331	40.279	40.38	0					10	6	2	0	0	0	0.51384	1	13039	13039		58.782	5.4305	1	49568	+		25887	12671	17318	17380	26232	26232					0.02195266665944473
LSSPALGQLP	10	Unmodified	_LSSPALGQLP_					0	0	0		ENST00000561730.1_1_16:58541858-58542949:+|nuORF	ENST00000561730.1_1_16:58541858-58542949:+|nuORF	ENST00000561730.1_1_16:58541858-58542949:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7817077636719	2	491.782025	981.549496	0.58365	0.00028703	-1.008	-0.00049574	-0.42439	-0.00020871	491.7815932628653	30.311	0.79755	30.311	29.851	30.649	0					61	17	5	0	0	0	0.34667	1	11245	11245		62.107	1.9404	1	1593300			25888	10713	17319	17381	26233	26233					0.057983405859772574
LSSPFNYS	8	Unmodified	_LSSPFNYS_					0	0	0			REV__ENST00000539542.5_2_5:118487642-118500286:+|nuORF	REV__ENST00000539542.5_2_5:118487642-118500286:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7139587402344	2	457.71635	913.418148	-2.6426	-0.0012096	-1.9888	-0.00091029	-4.6314	-0.0021199	457.71537806978154	19.351	0.68986	19.351	19.138	19.827	0					21	16	2	0	0	0	0.61938	1	5249	5249		45.952	7.1458	1	132050	+		25889	20124	17320	17382	26234	26234					-0.042024697819101675
LSSPRDTPKLT	11	Unmodified	_LSSPRDTPKLT_					0	0	0			REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.562744140625	3	405.562827	1213.66665	-0.57105	-0.00023159	0.52796	0.00021412	-0.043087	-1.7474E-05	405.56300966121563	25.958	0.21985	25.958	25.849	26.068	0					10	4	3	0	0	0	0.7326	1	9124	9124		21.78	0	1	420210	+		25890	17310	17321	17383	26235	26235					0.0683645373494528
LSSPRRNH	8	Unmodified	_LSSPRRNH_					0	0	0		nc|ENSG00000175779|Q8NAA6|LINC02694	nc|ENSG00000175779|Q8NAA6|LINC02694	nc|ENSG00000175779|Q8NAA6|LINC02694	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.8467102050781	3	322.84578	965.515511	-0.70259	-0.00022683	2.8246	0.00091191	2.122	0.00068508	322.84673111534863	22.554	0.13736	22.554	22.459	22.596	0					7	4	2	0	0	0	0.77246	1	6651	6651		24.203	0	1	139600			25891	11656	17322	17384	26236	26236					0.031373569376114574
LSSPVLLY	8	Unmodified	_LSSPVLLY_					0	0	0			REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.26123046875	2	446.262936	890.51132	0.585	0.00026107	-4.1372	-0.0018463	-3.5522	-0.0015852	446.2609163600788	31.302	0.31146	31.302	31.174	31.485	0					9	7	2	0	0	0	0.28675	1	11798	11798		86.935	0	1	425640	+		25892	17202	17323	17385	26237	26237					0.06168454671319523
LSSQLSQLG	9	Unmodified	_LSSQLSQLG_					0	0	0			REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7557373046875	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.765	1	38.765	38.265	39.265	0								0	0	0	0.080575	1	15268	15268		77.318	2.2743	1		+		25893	14007	17324	17386	26238	26238					0.028971771722581252
LSSQSVVEK	9	Unmodified	_LSSQSVVEK_					0	0	0			REV__nc|ENSG00000012660|Q9NYP7-3|ELOVL5	REV__nc|ENSG00000012660|Q9NYP7-3|ELOVL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.76885986328125	2	488.769114	975.523675	-0.51595	-0.00025218	0.16044	7.842E-05	-0.3555	-0.00017376	488.7690436397887	21.595	0.26733	21.595	21.488	21.755	0					9	5	2	0	0	0	0.056004	1	7069	7069		93.143	2.3666	1	401980	+		25894	20922	17325	17387	26239	26239					0.034934463437252816
LSSRADLSLI	10	Unmodified	_LSSRADLSLI_					0	0	0			REV__ENSG00000158008|ENST00000374280|EXTL1	REV__ENSG00000158008|ENST00000374280|EXTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8117065429688	2	537.811313	1073.60807	1.8925	0.0010178	-1.1702	-0.00062937	0.7223	0.00038846	537.8105510365895	31.452	0.28971	31.452	31.332	31.622	0					14	6	3	0	0	0	0.15477	1	11863	11863		85.862	0	1	405450	+		25895	15673	17326	17388	26240	26240					0.07421397160487686
LSSRGGGGGG	10	Unmodified	_LSSRGGGGGG_					0	0	0		nc|ENSG00000156026|Q8NE86-2|MCU;MCU|p.N318Ifs*19|1|0.09|ENSG00000156026|chr10:72884356-72884357|-/TATGT|frameshift_variant;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-2|MCU	nc|ENSG00000156026|Q8NE86-2|MCU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.7013244628906	2	402.701566	803.388579	-0.59279	-0.00023872	0.43244	0.00017414	-0.16035	-6.4575E-05	402.7017627722775	31.034	0.50438	31.034	30.881	31.386	0					19	10	3	0	0	0	0.66185	1	11525	11525		26.693	3.6504	1	169560			25896	5152	17327	17389	26241	26241					-0.02097989007347678
LSSRMPHLF	9	Unmodified	_LSSRMPHLF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2911987304688	2	544.289494	1086.56443	3.68	0.002003	-0.73344	-0.0003992	2.9465	0.0016038	544.2891577084595	28.135	0.36688	28.135	27.976	28.343	0					20	7	4	0	0	0	0.14603	1	10143	10143		68.787	68.787	1	1729400			25897	4109	17328	17390	26242	26242					0.02461509182330701
LSSRRGCLQ	9	Unmodified	_LSSRRGCLQ_					0	0	0		ENST00000315422.8_1_11:64577237-64577864:-|nuORF	ENST00000315422.8_1_11:64577237-64577864:-|nuORF	ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2718811035156	2	510.274375	1018.5342	-1.8041	-0.00092058	-3.9736	-0.0020276	-5.7777	-0.0029482	510.27282211970544	14.715	0.10674	14.715	14.649	14.756	0					7	3	3	0	0	0	0.04067	1	3176	3176		93.195	5.4412	1	202690			25898	8580	17329	17391	26243	26243					0.025671505171658282
LSSRRLSLEL	10	Unmodified	_LSSRRLSLEL_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-2|KIF27	REV__nc|ENSG00000165115|Q86VH2-2|KIF27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.9031982421875	3	391.903183	1172.68772	0.4648	0.00018216	-0.73251	-0.00028707	-0.26771	-0.00010492	391.90301228923505	20.984	0.21838	20.984	20.875	21.093	0					10	4	3	0	0	0	0.63019	1	6772	6772		30.569	0.25114	1	525840	+		25899	16022	17330	17392	26244	26244					0.10828463834491231
LSSRSAVLLV	10	Unmodified	_LSSRSAVLLV_					0	0	0		ENST00000406197.5_2_7:155266987-155295794:-|nuORF	ENST00000406197.5_2_7:155266987-155295794:-|nuORF	ENST00000406197.5_2_7:155266987-155295794:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.82470703125	2	522.824224	1043.63389	1.7966	0.00093932	-0.98587	-0.00051544	0.81076	0.00042388	522.823722312161	34.005	0.43837	34.005	33.906	34.345	0					26	10	4	0	0	0	0.28723	1	13077	13077		68.787	2.3575	1	1959900			25900	9282	17331	17393	26245	26245					0.1138229140274234
LSSRSYIINWS	11	Unmodified	_LSSRSYIINWS_					0	0	0			REV__ENST00000394534.6_2_7:91718825-91722482:+|nuORF	REV__ENST00000394534.6_2_7:91718825-91722482:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	663.3431396484375	2	663.346052	1324.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.111	1	33.111	32.611	33.611	0								0	0	0	0.3769	1	12646	12646		41.427	2.1738	1		+		25901	18867	17332	17394	26246	26246					0.028198561092494856
LSSRTPVL	8	Unmodified	_LSSRTPVL_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.7637634277344	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.984	1	15.984	15.484	16.484	0								0	0	0	1.7419	1	4334	4334		76.774	2.7994	1				25902	3912	17333	17395	26247	26247					0.071820887600893
LSSRTSPR	8	Unmodified	_LSSRTSPR_					0	0	0		ENST00000359520.11_1_14:102968187-102968367:+|nuORF	ENST00000359520.11_1_14:102968187-102968367:+|nuORF	ENST00000359520.11_1_14:102968187-102968367:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.25262451171875	2	452.253966	902.493378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.784	1	15.784	15.284	16.284	0								0	0	0	1.7419	1	3666	3666		34.173	0	1				25903	8850	17334	17396	26248	26248					0.0382313246918784
LSSSASRVA	9	Unmodified	_LSSSASRVA_					0	0	0		ENST00000356136.7_2_11:75526318-75526360:+|nuORF	ENST00000356136.7_2_11:75526318-75526360:+|nuORF	ENST00000356136.7_2_11:75526318-75526360:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2405700683594	2	439.240524	876.466495	-0.28238	-0.00012403	0.12351	5.4248E-05	-0.15888	-6.9785E-05	439.2405130170234	20.915	0.10596	20.915	20.845	20.951	0					5	3	2	0	0	0	0.25716	1	5683	5683		54.776	0.053964	1	125710			25904	8806	17335	17397	26249	26249					0.023320238580026853
LSSSLILFR	9	Unmodified	_LSSSLILFR_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|200|1|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|200|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.8779602050781	3	345.878087	1034.61243	0.34487	0.00011928	-0.53438	-0.00018483	-0.18951	-6.5548E-05	345.87788076596877	22.128	0.21508	22.128	22.021	22.237	0					8	4	3	0	0	0	0.51817	1	7454	7454		30.318	0	1	468470	+		25905	20818	17336	17398	26250	26250					0.09650906374031365
LSSSLRRCTR	10	Unmodified	_LSSSLRRCTR_					0	0	0			REV__ASPG|p.C95Rfs*75|1|0.1|ENSG00000166183|chr14:104093581-104093582|-/CG|frameshift_variant	REV__ASPG|p.C95Rfs*75|1|0.1|ENSG00000166183|chr14:104093581-104093582|-/CG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.82373046875	2	589.824763	1177.63497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.05	1	32.05	31.55	32.55	0								0	0	0	0.38093	1	12145	12145		24.519	0	1		+		25906	12235	17337	17399	26251	26251					0.053261824999935925
LSSSPNRIP	9	Unmodified	_LSSSPNRIP_					0	0	0		nc|ENSG00000156504|Q7Z309-4|PABIR2;nc|ENSG00000156504|Q7Z309-3|PABIR2;ENSG00000156504|ENST00000343004|PABIR2	nc|ENSG00000156504|Q7Z309-4|PABIR2	nc|ENSG00000156504|Q7Z309-4|PABIR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7682800292969	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.579	1	19.579	19.079	20.079	0								0	0	0	0.23459	1	5328	5328		45.952	1.5748	1				25907	5176	17338	17400	26252	26252					0.03836285783427229
LSSSSRRSLV	10	Unmodified	_LSSSSRRSLV_					0	0	0		ENST00000605039.5_1_12:51675285-51695971:-|nuORF;BIN2|p.T500Hfs*24|1|0.33|ENSG00000110934|chr12:51291608-51291609|-/G|frameshift_variant;nc|ENSG00000110934|Q9UBW5-2|BIN2;nc|ENSG00000110934|Q9UBW5-3|BIN2;ENSG00000110934|ENST00000615107|BIN2	ENST00000605039.5_1_12:51675285-51695971:-|nuORF	ENST00000605039.5_1_12:51675285-51695971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.3141479492188	2	546.312012	1090.60947	3.7838	0.0020671	-0.3581	-0.00019564	3.4257	0.0018715	546.3117015280899	31.003	2.198	31.003	30.848	33.046	0					126	44	6	0	0	0	0.46989	1	11694	11694		36.447	36.447	1	109700000			25908	299	17339	17401	26253	26253					0.06779031249243417
LSSSTEVVVMV	11	Unmodified	_LSSSTEVVVMV_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.8057250976562	2	575.804839	1149.59513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.842	1	29.842	29.342	30.342	0								0	0	0	0.39048	1	10699	10699		39.253	0	1				25909	7333	17340	17402	26254	26254					0.026311979860793144
LSSSTEVVVMV	11	Unmodified	_LSSSTEVVVMV_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.8054809570312	2	575.804839	1149.59513	1.6913	0.00097388	0.93062	0.00053586	2.622	0.0015097	575.8047476493207	29.697	0.60734	29.697	29.441	30.048	0					22	12	3	0	0	0	0.37008	1	10944	10944		54.776	1.6874	1	793430			25910	7333	17340	17402	26255	26255					0.026311979860793144
LSSTPLHG	8	Unmodified	_LSSTPLHG_					0	0	0			REV__NLRC5|p.F487Lfs*8|1|0.48|ENSG00000140853|chr16:57026401-57026401|T/-|frameshift_variant	REV__NLRC5|p.F487Lfs*8|1|0.48|ENSG00000140853|chr16:57026401-57026401|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.2189025878906	2	406.21906	810.423567	0.68189	0.000277	-1.1687	-0.00047475	-0.48681	-0.00019775	406.21870238782634	24.221	0.71357	24.221	23.914	24.628	0					31	14	4	0	0	0	0.52345	1	8309	8309		57.811	7.7867	1	5920700	+		25911	15094	17341	17403	26256	26256					0.010772538005653587
LSSTPSHLF	9	Unmodified	_LSSTPSHLF_					0	0	0			REV__ENST00000506043.1_1_X:77218054-77218261:+|nuORF	REV__ENST00000506043.1_1_X:77218054-77218261:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7585754394531	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.305	1	21.305	20.805	21.805	0								0	0	0	0.23459	1	6153	6153		45.952	1.8352	1		+		25912	19837	17342	17404	26257	26257					0.008294810348502324
LSSTVLGHS	9	Unmodified	_LSSTVLGHS_					0	0	0			REV__nc|ENSG00000204209|Q9UER7-3|DAXX	REV__nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7425537109375	2	450.742899	899.471246	0.47722	0.0002151	-1.7085	-0.00077008	-1.2312	-0.00055497	450.74211087488993	18.173	0.27238	18.173	18.018	18.29	0					10	6	2	0	0	0	0.53083	1	4701	4701		29.15	1.2673	1	47528	+		25913	17470	17343	17405	26258	26258					0.017489080007521807
LSSVQTKS	8	Unmodified	_LSSVQTKS_					0	0	0			REV__ENSG00000189132|ENST00000329357|FAM47B	REV__ENSG00000189132|ENST00000329357|FAM47B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.23724365234375	2	425.23745	848.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.142	1	23.142	22.642	23.642	0								0	0	0	1.7419	1	7932	7932		40.778	2.9666	1		+		25914	17212	17344	17406	26259	26259					0.030055056264814084
LSSVSTIRN	9	Unmodified	_LSSVSTIRN_					0	0	0		nc|ENSG00000111452|Q6QNK2-3|ADGRD1;nc|ENSG00000111452|Q6QNK2-2|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1	nc|ENSG00000111452|Q6QNK2-3|ADGRD1	nc|ENSG00000111452|Q6QNK2-3|ADGRD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.77752685546875	2	488.774731	975.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.899	1	29.899	29.399	30.399	0								0	0	0	0.30504	1	9773	9773		34.173	0	1				25915	2670	17345	17407	26260	26260					0.0461626843787144
LSSVVEKIY	9	Unmodified	_LSSVVEKIY_					0	0	0			REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2981567382812	2	519.297507	1036.58046	0.18802	9.764E-05	0.39268	0.00020392	0.5807	0.00030156	519.2976833518823	33.789	0.31748	33.789	33.673	33.99	0					30	12	4	0	0	0	0.0792	1	11351	11351		84.916	8.1414	1	632970	+		25916	22075	17346	17408	26261	26261					0.06363493900244066
LSSWCIPL	8	Unmodified	_LSSWCIPL_					0	0	0		ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7425231933594	2	459.741314	917.468075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.338	1	39.338	38.838	39.838	0								0	0	0	1.7419	1	14974	14974		74.517	3.2209	1				25917	5727	17347	17409	26262	26262					0.0060394162238708304
LSTADGRVE	9	Unmodified	_LSTADGRVE_					0	0	0		ENSG00000146216|ENST00000259750|TTBK1;nc|ENSG00000146216|Q5TCY1-2|TTBK1;TTBK1|p.P669Hfs*4|1|0.1|ENSG00000146216|chr6:43282742-43282742|C/-|frameshift_variant	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.24322509765625	2	474.243264	946.471974	-1.6025	-0.00075998	1.0304	0.00048866	-0.5721	-0.00027132	474.2437510562461	29.259	0.1329	29.259	29.184	29.317	0					9	5	2	0	0	0	0.42902	1	9527	9527		39.253	1.4413	1	90351			25918	4716	17348	17410	26263	26263					-0.0034029735018066276
LSTALRAPSGS	11	Unmodified	_LSTALRAPSGS_					0	0	0			REV__ENST00000568731.1_1_16:50334743-50335713:+|nuORF	REV__ENST00000568731.1_1_16:50334743-50335713:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2938232421875	2	530.293288	1058.57202	0.4346	0.00023047	0.8529	0.00045229	1.2875	0.00068276	530.2936160962427	18.659	0.095865	18.659	18.589	18.685	0					7	3	3	0	0	0	0.33926	1	4678	4678		58.23	3.4536	1	149440	+		25919	20362	17349	17411	26264	26264					0.04507939983614051
LSTAQLVQ	8	Unmodified	_LSTAQLVQ_					0	0	0		nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16;IL16|p.N620Rfs*67|1|0.33|ENSG00000172349|chr15:81292982-81292983|-/AG|frameshift_variant;IL16|p.L969Pfs*8|1|0.1|ENSG00000172349|chr15:81300226-81300227|-/C|frameshift_variant	nc|ENSG00000172349|Q14005-2|IL16	nc|ENSG00000172349|Q14005-2|IL16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2481689453125	2	430.247818	858.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.992	1	24.992	24.492	25.492	0								0	0	0	1.7419	1	8814	8814		27.882	4.8398	1				25920	6358	17350	17412	26265	26265					0.04618096006151973
LSTASRSILM	10	Unmodified	_LSTASRSILM_					0	0	0		ENST00000579482.5_1_17:72859347-72866165:-|nuORF	ENST00000579482.5_1_17:72859347-72866165:-|nuORF	ENST00000579482.5_1_17:72859347-72866165:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7981567382812	2	539.799891	1077.58523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.757	1	30.757	30.257	31.257	0								0	0	0	0.38797	1	9829	9829		34.173	1.3601	1				25921	10861	17351	17413	26266	26266					0.049540547713377237
LSTATKDTY	9	Unmodified	_LSTATKDTY_					0	0	0		ENST00000483825.5_1_1:167400920-167403349:-|nuORF;ENST00000470379.1_1_1:167400920-167408655:-|nuORF;ENST00000476733.5_1_1:167400920-167408655:-|nuORF;nc|ENSG00000198821|P20963-3|CD247;ENSG00000198821|ENST00000362089|CD247	ENST00000483825.5_1_1:167400920-167403349:-|nuORF	ENST00000483825.5_1_1:167400920-167403349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.261962890625	2	500.253297	998.492041	0.38232	0.00019126	3.4026	0.0017022	3.785	0.0018934	500.25319113522164	25.1	0.17409	25.1	24.987	25.161	0					16	5	4	0	0	0	0.59802	1	7498	7498		21.96	0.25755	1	238780			25922	7614	17352	17414	26267	26267					-0.007265464102374608
LSTGGAIK	8	Unmodified	_LSTGGAIK_					0	0	0			REV__ENST00000566774.1_1_16:68264768-68266536:-|nuORF	REV__ENST00000566774.1_1_16:68264768-68266536:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.7239074707031	2	373.723978	745.433404	0.24791	9.2648E-05	-0.7021	-0.00026239	-0.4542	-0.00016974	373.72378188413063	20.437	0.16478	20.437	20.331	20.495	0					5	3	2	0	0	0	0.46905	1	6614	6614		63.306	0	1	201920	+		25923	13663	17353	17415	26268	26268					0.05050441805940409
LSTHLKLFP	9	Unmodified	_LSTHLKLFP_					0	0	0		ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.31640625	2	528.316035	1054.61752	0.52998	0.00028	-0.054751	-2.8926E-05	0.47523	0.00025107	528.3161123824508	28.898	0.24492	28.898	28.78	29.024	0					16	8	2	0	0	0	0.071197	1	9042	9042		87.754	23.547	1	134150			25924	6328	17354	17416	26269	26269					0.09239210236637518
LSTHPILP	8	Unmodified	_LSTHPILP_					0	0	0			REV__ENST00000480213.1_1_1:153634874-153635650:-|nuORF	REV__ENST00000480213.1_1_1:153634874-153635650:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.2601623535156	2	439.260728	876.506903	-1.0369	-0.00045546	1.3063	0.00057381	0.26943	0.00011835	439.2611518047796	32.061	0.16233	32.061	31.977	32.139	0					10	6	2	0	0	0	0.74117	1	10661	10661		28.254	0	1	92610	+		25925	19585	17355	17417	26270	26270					0.06370990248422004
LSTILQLQ	8	Unmodified	_LSTILQLQ_					0	0	0			REV__nc|ENSG00000187164|A0MZ66-2|SHTN1	REV__nc|ENSG00000187164|A0MZ66-2|SHTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2789001464844	2	458.279118	914.543683	0.72202	0.00033089	-1.0986	-0.00050345	-0.37654	-0.00017256	458.27861902137096	35.187	0.46937	35.187	34.924	35.393	0					24	13	3	0	0	0	0.3049	1	13628	13628		82.241	0	1	289170	+		25926	17115	17356	17418	26271	26271					0.08299242074338053
LSTLARSPD	9	Unmodified	_LSTLARSPD_					0	0	0		ENST00000244745.3_2_6:21594329-21594497:+|nuORF	ENST00000244745.3_2_6:21594329-21594497:+|nuORF	ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.26129150390625	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.943	1	34.943	34.443	35.443	0								0	0	0	0.22284	1	12408	12408		47.657	12.505	1				25927	8221	17357	17419	26272	26272					0.02744579546526893
LSTLGSKTSM	10	Unmodified	_LSTLGSKTSM_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7699584960938	2	512.7708	1023.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.786	1	33.786	33.286	34.286	0								0	0	0	0.19992	1	12879	12879		64.207	0	1		+		25928	15268	17358	17420	26273	26273					0.01622373126065213
LSTLRHLTL	9	Unmodified	_LSTLRHLTL_					0	0	0		ENSG00000154814|ENST00000285083|OXNAD1;ENST00000486267.5_1_3:16312459-16312579:+|nuORF	ENSG00000154814|ENST00000285083|OXNAD1	ENSG00000154814|ENST00000285083|OXNAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.8853759765625	3	351.885353	1052.63423	0.50702	0.00017841	0.33257	0.00011703	0.83959	0.00029544	351.8851344186908	30.616	0.61013	30.616	30.205	30.815	0					31	13	3	0	0	0	0.35021	1	11365	11365		45.972	10.82	1	420290			25929	5105	17359	17421	26274	26274					0.11001711122594315
LSTPRCPWL	9	Unmodified	_LSTPRCPWL_					0	0	0		nc|ENSG00000224383|P0C7W0-2|PRR29;ENST00000225760.5_1_17:62075843-62079332:+|nuORF	nc|ENSG00000224383|P0C7W0-2|PRR29	nc|ENSG00000224383|P0C7W0-2|PRR29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7804565429688	2	536.784044	1071.55354	-0.43579	-0.00023393	-3.8615	-0.0020728	-4.2973	-0.0023067	536.7816812031244	34.362	0.33371	34.362	34.285	34.619	0					18	14	2	0	0	0	0.39215	1	11589	11589		42.396	1.618	1	114650			25930	8187	17360	17422	26275	26275					0.020621068080572513
LSTPTDLRL	9	Unmodified	_LSTPTDLRL_					0	0	0			REV__nc|ENSG00000291109|Q9UKY3-2|CES1P1	REV__nc|ENSG00000291109|Q9UKY3-2|CES1P1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.794189453125	2	508.292756	1014.57096	-0.46846	-0.00023812	-0.68888	-0.00035015	-1.1573	-0.00058827	508.2923859231124	31.565	0.15943	31.565	31.469	31.628	0					10	6	2	0	0	0	0.44593	1	10470	10470		37.812	3.639	1	47730	+		25931	20313	17361	17423	26276	26276					0.06425725614712974
LSTQLAGVH	9	Unmodified	_LSTQLAGVH_					0	0	0		FHOD3|p.G40S|1|0.39|ENSG00000134775|chr18:36297953-36297953|G/A|missense_variant	FHOD3|p.G40S|1|0.39|ENSG00000134775|chr18:36297953-36297953|G/A|missense_variant	FHOD3|p.G40S|1|0.39|ENSG00000134775|chr18:36297953-36297953|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2589416503906	2	463.258717	924.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.128	1	18.128	17.628	18.628	0								0	0	0	0.19749	1	5245	5245		51.335	0	1				25932	11138	17362	17424	26277	26277					0.037609007547075635
LSTQLSKM	8	Unmodified	_LSTQLSKM_					0	0	0			REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2494812011719	2	454.249503	906.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.312	1	32.312	31.812	32.812	0								0	0	0	1.7419	1	11225	11225		47.657	1.7054	1		+		25933	15807	17363	17425	26278	26278					0.02747022788491904
LSTQLSKM	8	Unmodified	_LSTQLSKM_					0	0	0			REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2492980957031	2	454.249503	906.484453	-0.42006	-0.00019081	-0.075669	-3.4373E-05	-0.49573	-0.00022519	454.2494174047086	32.481	0.32133	32.481	32.371	32.693	0					10	6	2	0	0	0	0.41	1	12263	12263		69.628	14.905	1	518950	+		25934	15807	17363	17425	26279	26279					0.02747022788491904
LSTRGSPEL	9	Unmodified	_LSTRGSPEL_					0	0	0			REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF	REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2613220214844	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.888	1	34.888	34.388	35.388	0								0	0	0	0.091069	1	11784	11784		74.255	0	1		+		25935	15321	17364	17426	26280	26280					0.027445795465382616
LSTRGTPA	8	Unmodified	_LSTRGTPA_					0	0	0			REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.72442626953125	2	401.72451	801.434466	0.94486	0.00037957	-3.365	-0.0013518	-2.4202	-0.00097225	401.7239497484539	19.704	0.26623	19.704	19.569	19.835	0					9	6	2	0	0	0	0.63077	1	6024	6024		44.117	6.9577	1	404610	+		25936	18869	17365	17427	26281	26281					0.025806561748595414
LSTRPYSAW	9	Unmodified	_LSTRPYSAW_					0	0	0		ENST00000300107.7_1_15:65445967-65447163:-|nuORF	ENST00000300107.7_1_15:65445967-65447163:-|nuORF	ENST00000300107.7_1_15:65445967-65447163:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7791748046875	2	540.777274	1079.53999	3.5021	0.0018939	0.28849	0.00015601	3.7906	0.0020499	540.7772725834765	44.348	0.25536	44.348	44.227	44.483	0					24	10	3	0	0	0	0.18605	1	17755	17755		63.306	3.0123	1	324870			25937	8481	17366	17428	26282	26282					0.003405723004561878
LSTRTSPILPA	11	Unmodified	_LSTRTSPILPA_					0	0	0			REV__ENST00000561204.5_1_19:47919910-47920188:-|nuORF	REV__ENST00000561204.5_1_19:47919910-47920188:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.8958740234375	3	385.895917	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.807	1	31.807	31.307	32.307	0								0	0	0	0.44926	1	11930	11930		26.063	0.9374	1		+		25938	20290	17367	17429	26283	26283					0.09477659085905543
LSTSAMFDRA	10	Oxidation (M)	_LSTSAM(Oxidation (M))FDRA_		LSTSAM(1)FDRA		LSTSAM(58)FDRA	0	0	1		MMACHC|p.P56S|1|0.38|ENSG00000132763|chr1:45507440-45507440|C/T|missense_variant	MMACHC|p.P56S|1|0.38|ENSG00000132763|chr1:45507440-45507440|C/T|missense_variant	MMACHC|p.P56S|1|0.38|ENSG00000132763|chr1:45507440-45507440|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.7632446289062	2	557.763506	1113.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.335	1	27.335	26.835	27.835	0								0	0	0	0.24873	1	8411	8411		58.23	8.7884	1				25939	11370	17368	17430	26284	26284		443			-0.039756990220894295
LSTSGDQH	8	Unmodified	_LSTSGDQH_					0	0	0			REV__DCLK1|p.K527T|1|0.12|ENSG00000133083|chr13:35810943-35810943|T/G|missense_variant	REV__DCLK1|p.K527T|1|0.12|ENSG00000133083|chr13:35810943-35810943|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.6927490234375	2	422.693407	843.37226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.645	1	42.645	42.145	43.145	0								0	0	0	1.7419	1	14879	14879		38.806	6.8513	1		+		25940	12677	17369	17431	26285	26285					-0.05569114964134769
LSTSIYQLI	9	Unmodified	_LSTSIYQLI_					0	0	0		PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2973022460938	2	519.297507	1036.58046	1.3285	0.00068987	-0.26046	-0.00013526	1.068	0.00055462	519.2973173986001	33.776	0.22716	33.776	33.651	33.878	0					15	6	3	0	0	0	0.16524	1	11874	11874		65.803	2.2693	1	145190			25941	4306	17370	17432	26286	26286					0.06363493900221329
LSTSTALGYLH	11	Unmodified	_LSTSTALGYLH_					0	0	0		ENST00000357115.7_2_4:151935799-151936641:-|nuORF	ENST00000357115.7_2_4:151935799-151936641:-|nuORF	ENST00000357115.7_2_4:151935799-151936641:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	388.2084045410156	3	388.208273	1161.60299	-0.78028	-0.00030291	0.53525	0.00020779	-0.24503	-9.5121E-05	388.2086721897517	23.206	0.20201	23.206	23.166	23.368	0					10	6	2	0	0	0	0.66915	1	6949	6949		30.569	12.736	1	77638			25942	8817	17371	17433	26287	26287					0.028650932978507626
LSTTLPSVY	9	Unmodified	_LSTTLPSVY_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7700500488281	2	490.768583	979.522613	0.59159	0.00029033	3.8697	0.0018991	4.4612	0.0021894	490.77108766685535	35.643	0.83805	35.643	35.281	36.12	0					33	24	2	0	0	0	0.30268	1	13817	13817		50.025	2.1089	1	1987600	+		25943	17314	17372	17434	26288	26288					0.03203231974805476
LSTTSVPR	8	Unmodified	_LSTTSVPR_					0	0	0		ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.74578857421875	2	430.745442	859.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.078	1	25.078	24.578	25.578	0								0	0	0	1.7419	1	7500	7500		58.782	3.2778	1				25944	7753	17373	17435	26289	26289					0.040972118633817445
LSTVKVEPLQ	10	Unmodified	_LSTVKVEPLQ_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.89013671875	3	371.888651	1112.64412	0.90909	0.00033808	2.5544	0.00094995	3.4635	0.001288	371.8897554890204	17.397	0.55357	17.397	17.351	17.904	0					26	11	4	0	0	0	0.50881	1	5169	5169		41.08	3.2685	1	2708500	+		25945	17190	17374	17436	26290	26290					0.0923085433732922
LSTYARSY	8	Unmodified	_LSTYARSY_					0	0	0			REV__nc|ENSG00000109790|Q96PQ7-4|KLHL5	REV__nc|ENSG00000109790|Q96PQ7-4|KLHL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7426452636719	2	480.742899	959.471246	-0.63866	-0.00030703	0.33113	0.00015919	-0.30753	-0.00014784	480.7431399324865	21.446	0.1667	21.446	21.338	21.505	0					5	3	2	0	0	0	0.58597	1	6997	6997		51.335	5.3835	1	273060	+		25946	20973	17375	17437	26291	26291					-0.010110919992484924
LSVAGGFVALY	11	Unmodified	_LSVAGGFVALY_					0	0	0		nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1;ENSG00000182871|ENST00000651438|COL18A1;COL18A1|p.R608Gfs*27|1|0.21|ENSG00000182871|chr21:45468712-45468712|C/-|frameshift_variant;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant	nc|ENSG00000182871|P39060-1|COL18A1	nc|ENSG00000182871|P39060-1|COL18A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.8035278320312	2	548.8055	1095.59645	1.2519	0.00068706	-1.6861	-0.00092535	-0.43419	-0.00023829	548.8045775526425	26.567	0.52794	26.567	26.13	26.658	0					31	17	2	0	0	0	0.52516	1	7961	7961		42.396	5.9494	1	129160			25947	11671	17376	17438	26292	26292					0.052472001371370425
LSVALFHFA	9	Unmodified	_LSVALFHFA_					0	0	0			REV__ENSG00000168306|ENST00000302819|ACOX2	REV__ENSG00000168306|ENST00000302819|ACOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.779541015625	2	502.781828	1003.5491	1.1608	0.00058364	2.9657	0.0014911	4.1265	0.0020747	502.7833097521909	27.45	0.4229	27.45	27.289	27.712	0					19	8	3	0	0	0	0.30268	1	9937	9937		50.025	11.218	1	4663300	+		25948	16250	17377	17439	26293	26293					0.04746965656784141
LSVAWKLP	8	Unmodified	_LSVAWKLP_					0	0	0			REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.27691650390625	2	457.278921	912.543289	-0.62344	-0.00028509	-3.4447	-0.0015752	-4.0682	-0.0018603	457.2770303758945	32.664	0.33446	32.664	32.531	32.865	0					14	8	3	0	0	0	0.63077	1	12019	12019		44.117	9.9443	1	776570	+		25949	19049	17378	17440	26294	26294					0.08351867145120195
LSVDGPVK	8	Unmodified	_LSVDGPVK_					0	0	0			REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.7369384765625	2	407.737086	813.459619	3.0549	0.0012456	-2.825	-0.0011519	0.22994	9.3756E-05	407.7357787657784	29.232	0.46659	29.232	28.925	29.392	0					25	9	3	0	0	0	0.49216	1	10652	10652		60.972	2.742	1	1831000	+		25950	15603	17379	17441	26295	26295					0.04542710977432307
LSVDREAGH	9	Unmodified	_LSVDREAGH_					0	0	0			REV__ENST00000393459.5_1_10:102791110-102792147:+|nuORF	REV__ENST00000393459.5_1_10:102791110-102792147:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2488098144531	2	492.24888	982.483208	-0.54722	-0.00026937	0.27608	0.0001359	-0.27113	-0.00013347	492.24903265206086	22.926	0.25557	22.926	22.793	23.049	0					15	6	4	0	0	0	0.16002	1	7506	7506		66.429	8.1994	1	900780	+		25951	18850	17380	17442	26296	26296					-0.008734752560485504
LSVDVGGAKRL	11	Unmodified	_LSVDVGGAKRL_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.833740234375	2	557.83258	1113.65061	-0.18196	-0.0001015	1.7178	0.00095825	1.5359	0.00085675	557.8336409704592	29.404	0.10399	29.404	29.308	29.412	0					4	2	2	0	0	0	0.4771	1	10875	10875		29.17	4.6509	1	79300			25952	4687	17381	17443	26297	26297					0.09832792288693781
LSVEKGLP	8	Unmodified	_LSVEKGLP_					0	0	0			REV__nc|ENSG00000182168|O95185-2|UNC5C	REV__nc|ENSG00000182168|O95185-2|UNC5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7522888183594	2	421.752736	841.490919	-0.32984	-0.00013911	0.015778	6.6544E-06	-0.31406	-0.00013246	421.7527269894043	37.032	0.40651	37.032	36.829	37.235	0					14	8	2	0	0	0	0.34985	1	14411	14411		76.847	0	1	121660	+		25953	16870	17382	17444	26298	26298					0.06383284011531032
LSVEPLSIEK	10	Unmodified	_LSVEPLSIEK_					0	0	0			REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5	REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.2160949707031	3	372.216657	1113.62814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.859	1	15.859	15.359	16.359	0								0	0	0	0.40797	1	3697	3697		28.081	1.3886	1		+		25954	12829	17383	17445	26299	26299					0.07587148100446939
LSVFCWHI	8	Unmodified	_LSVFCWHI_					0	0	0		FLRT2|p.M566I|1|0.29|ENSG00000185070|chr14:85623212-85623212|G/A|missense_variant	FLRT2|p.M566I|1|0.29|ENSG00000185070|chr14:85623212-85623212|G/A|missense_variant	FLRT2|p.M566I|1|0.29|ENSG00000185070|chr14:85623212-85623212|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.755859375	2	502.754756	1003.49496	0.98874	0.0004971	0.92811	0.00046661	1.9169	0.00096371	502.7553046437141	34.623	0.34471	34.623	34.495	34.84	0					21	9	3	0	0	0	0.67475	1	13380	13380		37.028	37.028	1	1169800			25955	11141	17384	17446	26300	26300					-0.006649497664284354
LSVIAQAF	8	Unmodified	_LSVIAQAF_					0	0	0		PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.A1793T|1|0.31|ENSG00000004399|chr3:129558496-129558496|C/T|missense_variant;ENST00000549217.5_1_12:94694713-94697836:+|nuORF;ENST00000504524.5_1_3:129275157-129277480:-|nuORF;ENST00000512744.5_2_3:129275157-129278574:-|nuORF;ENSG00000136040|ENST00000258526|PLXNC1	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000136040|ENST00000258526|PLXNC1	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.7474670410156	2	424.747453	847.480354	1.0535	0.00044747	-1.8339	-0.00077895	-0.78043	-0.00033149	424.7468754068536	39.788	0.37429	39.788	39.643	40.017	0					14	8	2	0	0	0	0.68754	1	15806	15806		35.201	0	1	84631			25956	938;4048	17385	17447	26301	26301					0.05051301357093507
LSVIQPTSV	9	Unmodified	_LSVIQPTSV_					0	0	0			REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2765197753906	2	472.276575	942.538597	-0.56733	-0.00026794	-0.27678	-0.00013072	-0.84411	-0.00039865	472.27643689308314	26.165	0.82363	26.165	25.898	26.722	0					48	16	4	0	0	0	0.13267	1	9389	9389		71.877	7.6702	1	1527700	+		25957	12760	17386	17448	26302	26302					0.06502938211701803
LSVKFVLPV	9	Unmodified	_LSVKFVLPV_					0	0	0		ENST00000369758.8_1_20:62904962-62905025:+|nuORF	ENST00000369758.8_1_20:62904962-62905025:+|nuORF	ENST00000369758.8_1_20:62904962-62905025:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.5499572753906	3	334.551311	1000.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.395	1	16.395	15.895	16.895	0								0	0	0	0.3368	1	3878	3878		27.882	11.165	1				25958	8946	17387	17449	26303	26303					0.1318128238481222
LSVKKPLSQ	9	Unmodified	_LSVKKPLSQ_					0	0	0			REV__ENSG00000111247|ENST00000352618|RAD51AP1	REV__ENSG00000111247|ENST00000352618|RAD51AP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.8781433105469	3	333.878087	998.612431	0.38661	0.00012908	-0.66622	-0.00022243	-0.27961	-9.3355E-05	333.8778468751126	22.515	0.41356	22.515	22.17	22.584	0					18	8	3	0	0	0	0.51817	1	7580	7580		30.318	0	1	157500	+		25959	13959	17388	17450	26304	26304					0.11306906374034043
LSVKLFNR	8	Unmodified	_LSVKLFNR_					0	0	0			REV__ENST00000524204.1_1_5:170834629-170834680:+|nuORF	REV__ENST00000524204.1_1_5:170834629-170834680:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.2027893066406	3	326.202793	975.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.251	1	29.251	28.751	29.751	0								0	0	0	1.7419	1	9213	9213		15.642	0	1		+		25960	19975	17389	17451	26305	26305					0.09778056922425549
LSVLQVSR	8	Unmodified	_LSVLQVSR_					0	0	0		ENST00000253699.7_1_3:15138164-15139629:-|nuORF	ENST00000253699.7_1_3:15138164-15139629:-|nuORF	ENST00000253699.7_1_3:15138164-15139629:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.27667236328125	2	451.276909	900.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.215	1	24.215	23.715	24.715	0								0	0	0	1.7419	1	8321	8321		60.972	0	1				25961	8252	17390	17452	26306	26306					0.08501777651417797
LSVMPNELV	9	Unmodified	_LSVMPNELV_					0	0	0		tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.274169921875	2	501.270435	1000.52632	2.9237	0.0014655	3.9385	0.0019742	6.8621	0.0034398	501.27199184224247	32.92	0.40649	32.92	32.64	33.046	0					20	8	4	0	0	0	0.13267	1	12479	12479		71.877	5.4482	1	2914700			25962	23010	17391	17453	26307	26307					0.026075784770227983
LSVPSRQSWAL	11	Unmodified	_LSVPSRQSWAL_					0	0	0		ENST00000359297.6_1_1:36805948-36806095:-|nuORF	ENST00000359297.6_1_1:36805948-36806095:-|nuORF	ENST00000359297.6_1_1:36805948-36806095:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.3417358398438	2	622.343312	1242.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.483	1	11.483	10.983	11.983	0								0	0	0	0.45674	1	2362	2362		17.468	1.8262	1				25963	8847	17392	17454	26308	26308					0.06044177317426147
LSVQDQPSL	9	Unmodified	_LSVQDQPSL_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.76116943359375	2	493.761289	985.508025	0.76841	0.00037941	-0.82772	-0.0004087	-0.059315	-2.9287E-05	493.7608318879652	39.402	0.30832	39.402	39.282	39.591	0					22	11	3	0	0	0	0.24095	1	14985	14985		56.721	1.2168	1	410810			25964	1646	17393	17455	26309	26309					0.014691598266608707
LSVQLSVV	8	Unmodified	_LSVQLSVV_					0	0	0			REV__ENST00000568784.6_1_16:46694386-46722246:-|nuORF	REV__ENST00000568784.6_1_16:46694386-46722246:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7603454589844	2	422.760561	843.506569	1.0539	0.00044555	-1.4001	-0.00059192	-0.34623	-0.00014637	422.7599365349259	27.755	0.31919	27.755	27.543	27.862	0					12	6	3	0	0	0	0.5535	1	9984	9984		54.776	0	1	559790	+		25965	13161	17394	17456	26310	26310					0.07855570528568023
LSVQPAPEK	9	Unmodified	_LSVQPAPEK_					0	0	0			REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2733459472656	2	484.7742	967.533846	-0.22313	-0.00010817	-0.06857	-3.3241E-05	-0.2917	-0.00014141	484.7741287908194	38.555	0.72947	38.555	38.382	39.111	0					73	27	5	0	0	0	0.24095	1	14620	14620		56.721	1.9447	1	12422000	+		25966	15959	17395	17457	26311	26311					0.04878054068944948
LSVRTGPTTI	10	Unmodified	_LSVRTGPTTI_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.8071899414062	2	522.806031	1043.59751	0.45105	0.00023581	0.099607	5.2075E-05	0.55066	0.00028789	522.8060726630043	24.512	0.15979	24.512	24.435	24.594	0					12	5	3	0	0	0	0.39647	1	7504	7504		56.632	6.5987	1	173590	+		25967	17506	17396	17458	26312	26312					0.07745414506052839
LSVSENHI	8	Unmodified	_LSVSENHI_					0	0	0		nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.73504638671875	2	449.735074	897.455596	-0.3043	-0.00013685	-0.39317	-0.00017682	-0.69747	-0.00031368	449.73497247831597	22.094	0.11503	22.094	22.012	22.127	0					5	3	2	0	0	0	0.34985	1	6201	6201		76.847	2.5916	1	124020			25968	1383	17397	17459	26313	26313					0.0027662148370382056
LSVSGAVIRI	10	Unmodified	_LSVSGAVIRI_					0	0	0		ENST00000505769.5_2_6:71123313-71138035:+|nuORF	ENST00000505769.5_2_6:71123313-71138035:+|nuORF	ENST00000505769.5_2_6:71123313-71138035:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.81884765625	2	507.818941	1013.62333	0.93298	0.00047379	-0.41201	-0.00020923	0.52098	0.00026456	507.8186466997996	29.635	0.14123	29.635	29.541	29.682	0					6	3	2	0	0	0	0.4287	1	10597	10597		32.812	0	1	77000			25969	10188	17398	17460	26314	26314					0.1170630874833023
LSVSLSLPL	9	Unmodified	_LSVSLSLPL_					0	0	0			REV__ENST00000555253.1_1_14:75413094-75413220:-|nuORF	REV__ENST00000555253.1_1_14:75413094-75413220:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7886047363281	2	464.789318	927.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.242	1	41.242	40.742	41.742	0								0	0	0	0.28164	1	15679	15679		38.806	0	1		+		25970	20242	17399	17461	26315	26315					0.09740412734140591
LSVSRPVDT	9	Unmodified	_LSVSRPVDT_					0	0	0			REV__ENST00000589965.5_1_19:12885462-12886240:-|nuORF	REV__ENST00000589965.5_1_19:12885462-12886240:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2691650390625	2	487.269281	972.52401	-0.70067	-0.00034141	0.39236	0.00019118	-0.30831	-0.00015023	487.26941701286154	25.433	0.31252	25.433	25.273	25.586	0					15	6	3	0	0	0	0.21263	1	9011	9011		60.118	7.0293	1	1328300	+		25971	20487	17400	17462	26316	26316					0.03664866063570571
LSVSSVPVSDQ	11	Unmodified	_LSVSSVPVSDQ_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.2906494140625	2	559.290411	1116.56627	-0.10013	-5.5999E-05	0.25274	0.00014135	0.15261	8.5356E-05	559.2906686106174	26.928	0.1628	26.928	26.845	27.008	0					8	3	3	0	0	0	0.041092	1	9719	9719		109.48	21.782	1	263560	+		25972	14771	17401	17463	26317	26317					0.012647966812892264
LSVSTASQDNL	11	Unmodified	_LSVSTASQDNL_					0	0	0			REV__VPS13D|p.R1061Q|1|0.21|ENSG00000048707|chr1:12276770-12276770|G/A|missense_variant	REV__VPS13D|p.R1061Q|1|0.21|ENSG00000048707|chr1:12276770-12276770|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.787109375	2	567.785492	1133.55643	0.1189	6.7509E-05	0.70351	0.00039945	0.82241	0.00046695	567.7862433623038	27.138	0.17781	27.138	27.075	27.253	0					14	6	3	0	0	0	0.30464	1	8606	8606		62.107	3.3255	1	165240	+		25973	22277	17402	17464	26318	26318					-0.005003913240898328
LSVSTNKP	8	Unmodified	_LSVSTNKP_					0	0	0			REV__YME1L1|p.N147Tfs*24|1|0.34|ENSG00000136758|chr10:27145490-27145490|T/-|frameshift_variant	REV__YME1L1|p.N147Tfs*24|1|0.34|ENSG00000136758|chr10:27145490-27145490|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.2398986816406	2	423.239993	844.465432	-0.3521	-0.00014902	0.61322	0.00025954	0.26112	0.00011052	423.24016826072403	18.248	0.26135	18.248	18.076	18.337	0					13	5	4	0	0	0	0.65148	1	5456	5456		40.778	1.5253	1	689660	+		25974	14878	17403	17465	26319	26319					0.03697809489096926
LSVVNCNVP	9	Unmodified	_LSVVNCNVP_					0	0	0			REV__ENST00000341285.7_2_4:15607138-15607243:-|nuORF	REV__ENST00000341285.7_2_4:15607138-15607243:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.276611328125	2	472.747127	943.479702	-0.34784	-0.00016444	-4.3057	-0.0020355	-4.6536	-0.0022	472.7453512400762	30.446	0.10926	30.446	30.391	30.501	0					6	4	2	0	0	0	0.21263	1	9697	9697		60.118	19.546	1	42337	+		25975	18451	17404	17466	26320	26320					0.00570138645730367
LSVVNQLR	8	Unmodified	_LSVVNQLR_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;ENST00000523384.1_1_8:66525632-66539633:-|nuORF	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7821960449219	2	464.782359	927.550165	0.53806	0.00025008	-0.98492	-0.00045778	-0.44686	-0.00020769	464.78194632499145	20.391	0.51299	20.391	20.064	20.577	0					22	11	4	0	0	0	0.30437	1	6329	6329		82.305	2.854	1	2319100			25976	2287	17405	17467	26321	26321					0.08349180025697933
LSVVNQLR	8	Unmodified	_LSVVNQLR_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;ENST00000523384.1_1_8:66525632-66539633:-|nuORF	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.78204345703125	2	464.782359	927.550165	-0.48731	-0.00022649	-0.22267	-0.00010349	-0.70998	-0.00032999	464.7822398743359	20.302	0.21739	20.302	20.193	20.41	0					9	4	3	0	0	0	0.24714	1	6435	6435		106.42	0	1	2186300			25977	2287	17405	17467	26322	26322					0.08349180025697933
LSVVRGPRQP	10	Unmodified	_LSVVRGPRQP_					0	0	0			REV__nc|ENSG00000174791|Q13671-2|RIN1	REV__nc|ENSG00000174791|Q13671-2|RIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	370.2239990234375	3	370.224368	1107.65128	0.9951	0.00036841	-4.0934	-0.0015155	-3.0983	-0.0011471	370.2222773103269	25.285	0.84607	25.285	25.188	26.034	0					26	15	3	0	0	0	0.61238	1	8973	8973		32.751	3.1998	1	532820	+		25978	16583	17406	17468	26323	26323					0.10175631728429835
LSVVTGYK	8	Unmodified	_LSVVTGYK_					0	0	0			REV__ENST00000391694.4_1_19:58988585-58991546:+|nuORF	REV__ENST00000391694.4_1_19:58988585-58991546:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.7517395019531	2	433.752736	865.490919	0.90435	0.00039226	-3.6691	-0.0015915	-2.7648	-0.0011992	433.75194418944807	41.712	0.29037	41.712	41.589	41.879	0					23	12	2	0	0	0	0.73426	1	16366	16366		29.15	0	1	58260	+		25979	13338	17407	17469	26324	26324					0.05279284011521668
LSVVYVSESAL	11	Unmodified	_LSVVYVSESAL_					0	0	0			REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.54742431640625	3	389.548295	1165.62306	-0.15266	-5.947E-05	-1.8633	-0.00072583	-2.0159	-0.0007853	389.54750985413835	20.984	0.089426	20.984	20.944	21.033	0					4	2	2	0	0	0	0.7767	1	6017	6017		20.03	9.4437	1	267740	+		25980	20679	17408	17470	26325	26325					0.04686844237812693
LSVYFSKL	8	Unmodified	_LSVYFSKL_					0	0	0			REV__ENST00000272462.2_1_2:110841508-110841715:-|nuORF	REV__ENST00000272462.2_1_2:110841508-110841715:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7738952636719	2	478.776211	955.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.207	1	37.207	36.707	37.707	0								0	0	0	1.7419	1	14526	14526		42.396	1.8235	1		+		25981	18106	17409	17471	26326	26326					0.058321435626680795
LSWATILLSP	10	Unmodified	_LSWATILLSP_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.822509765625	2	550.82115	1099.62775	1.816	0.0010003	-1.0916	-0.00060127	0.72437	0.000399	550.8206048779351	39.743	2.9042	39.743	39.202	42.106	0					108	67	2	0	0	0	0.54197	2	15573	15573;16495		40.778	1.5253	1	195410			25982	5349	17410	17472	26327;26328	26327					0.08191773171233763
LSWKAGTLA	9	Unmodified	_LSWKAGTLA_					0	0	0		ENST00000524249.5_1_2:46769237-46769306:-|nuORF	ENST00000524249.5_1_2:46769237-46769306:-|nuORF	ENST00000524249.5_1_2:46769237-46769306:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7711486816406	2	473.77146	945.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.689	1	25.689	25.189	26.189	0								0	0	0	0.13425	1	8204	8204		63.534	4.7519	1				25983	10342	17411	17473	26329	26329					0.05342375277143674
LSWKSHLY	8	Unmodified	_LSWKSHLY_					0	0	0		ENST00000498108.5_1_1:225685479-225688852:-|nuORF	ENST00000498108.5_1_1:225685479-225688852:-|nuORF	ENST00000498108.5_1_1:225685479-225688852:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2747802734375	2	517.276909	1032.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.345	1	32.345	31.845	32.845	0								0	0	0	1.7419	1	11240	11240		42.474	3.6683	1				25984	10135	17412	17474	26330	26330					0.024297776514231373
LSWKTKSP	8	Unmodified	_LSWKTKSP_					0	0	0			REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.77166748046875	2	473.77146	945.528367	-0.017733	-8.4014E-06	-0.22196	-0.00010516	-0.23969	-0.00011356	473.7711759836934	25.527	0.17705	25.527	25.449	25.626	0					12	6	3	0	0	0	0.51384	1	7695	7695		58.782	2.0609	1	110850	+		25985	14597	17413	17475	26331	26331					0.05342375277143674
LSWLDGSGL	9	Unmodified	_LSWLDGSGL_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.24560546875	2	474.245275	946.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.055	1	29.055	28.555	29.555	0								0	0	0	0.24724	1	10716	10716		44.117	3.3386	1				25986	1523	17414	17476	26332	26332					0.0006179214353778661
LSWLQVKKA	9	Unmodified	_LSWLQVKKA_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.220458984375	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.753	1	15.753	15.253	16.253	0								0	0	0	0.27025	1	4223	4223		40.778	1.5253	1				25987	10579	17415	17477	26333	26333					0.11110899127993434
LSWLTSVPL	9	Unmodified	_LSWLTSVPL_					0	0	0		ENST00000357052.7_1_19:41302655-41302697:+|nuORF	ENST00000357052.7_1_19:41302655-41302697:+|nuORF	ENST00000357052.7_1_19:41302655-41302697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.1973571777344	3	339.198937	1014.57498	0.2275	7.7168E-05	-4.4263	-0.0015014	-4.1988	-0.0014242	339.19731322721344	20.131	0.11066	20.131	20.058	20.168	0					5	3	2	0	0	0	0.48389	1	5329	5329		34.173	1.3601	1	95400			25988	8814	17416	17478	26334	26334					0.06827815108408686
LSWPQLSY	8	Unmodified	_LSWPQLSY_					0	0	0		ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000156269|ENST00000286794|NAA11;ENSG00000102030|ENST00000464845|NAA10;ENST00000478177.1_1_X:153199394-153200402:-|nuORF	ENST00000466877.5_1_X:153197755-153200402:-|nuORF	ENST00000466877.5_1_X:153197755-153200402:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2537841796875	2	497.255643	992.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.734	1	36.734	36.234	37.234	0								0	0	0	1.7419	1	13877	13877		58.782	7.4465	1				25989	2150	17417	17479	26335	26335					0.00018382523182935984
LSWVFLAGI	9	Unmodified	_LSWVFLAGI_					0	0	0		nc|ENSG00000211944|A0A0C4DH30|IGHV3-16	nc|ENSG00000211944|A0A0C4DH30|IGHV3-16	nc|ENSG00000211944|A0A0C4DH30|IGHV3-16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.29156494140625	2	503.292028	1004.5695	0.73778	0.00037132	-0.87844	-0.00044211	-0.14065	-7.079E-05	503.29158656664697	37.337	0.28546	37.337	37.219	37.504	0					12	8	2	0	0	0	0.23186	1	14168	14168		57.811	7.7867	1	171380			25990	11752	17418	17480	26336	26336					0.06740136316614098
LSYAWEPRC	9	Unmodified	_LSYAWEPRC_					0	0	0		RASGRP4|p.R429W|1|0.22|ENSG00000171777|chr19:38413420-38413420|G/A|missense_variant	RASGRP4|p.R429W|1|0.22|ENSG00000171777|chr19:38413420-38413420|G/A|missense_variant	RASGRP4|p.R429W|1|0.22|ENSG00000171777|chr19:38413420-38413420|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.764892578125	2	562.763309	1123.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.596	1	21.596	21.096	22.096	0								0	0	0	0.03352	1	7185	7185		94.006	8.8456	1				25991	12002	17419	17481	26337	26337					-0.04475073951266495
LSYAWEPRC	9	Unmodified	_LSYAWEPRC_					0	0	0		RASGRP4|p.R429W|1|0.22|ENSG00000171777|chr19:38413420-38413420|G/A|missense_variant	RASGRP4|p.R429W|1|0.22|ENSG00000171777|chr19:38413420-38413420|G/A|missense_variant	RASGRP4|p.R429W|1|0.22|ENSG00000171777|chr19:38413420-38413420|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7648315429688	2	562.763309	1123.51206	3.4705	0.001953	-1.5206	-0.00085572	1.9499	0.0010973	562.7628248501873	21.687	0.46542	21.687	21.505	21.97	0					21	9	4	0	0	0	0.05357	1	7072	7072		94.006	0.81096	1	2363400			25992	12002	17419	17481	26338	26338					-0.04475073951266495
LSYDYAVKK	9	Unmodified	_LSYDYAVKK_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.8655700683594	3	362.865847	1085.57571	0.2858	0.00010371	-1.044	-0.00037882	-0.75818	-0.00027512	362.8655929281905	25.468	0.10995	25.468	25.409	25.519	0					4	2	2	0	0	0	0.35045	1	9055	9055		52.937	21.407	1	108670			25993	2952	17420	17482	26339	26339					0.036346097574551095
LSYIRQSSL	9	Unmodified	_LSYIRQSSL_					0	0	0			REV__ENST00000519587.1_1_8:97506087-97541446:+|nuORF	REV__ENST00000519587.1_1_8:97506087-97541446:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7993774414062	2	533.798206	1065.58186	1.8072	0.00096466	-0.058024	-3.0973E-05	1.7491	0.00093368	533.7971194488881	40.989	0.1477	40.989	40.926	41.074	0					8	3	3	0	0	0	0.28897	1	16279	16279		51.193	13.381	1	97085	+		25994	18211	17421	17483	26340	26340					0.051691279890064834
LSYLAKNLG	9	Unmodified	_LSYLAKNLG_					0	0	0		tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.78399658203125	2	489.784567	977.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.658	1	21.658	21.158	22.158	0								0	0	0	0.3119	1	5999	5999		32.812	4.9302	1				25995	22927	17422	17484	26341	26341					0.06490644448615512
LSYNLSINI	9	Unmodified	_LSYNLSINI_					0	0	0			REV__ENSG00000077943|ENST00000378076|ITGA8	REV__ENSG00000077943|ENST00000378076|ITGA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7879638671875	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.812	1	32.812	32.312	33.312	0								0	0	0	0.3245	1	10973	10973		30.318	1.1477	1		+		25996	13267	17423	17485	26342	26342					0.04370323240414109
LSYPQTNVF	9	Unmodified	_LSYPQTNVF_					0	0	0		ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.77197265625	2	534.771657	1067.52876	0.70874	0.00037901	0.25298	0.00013529	0.96172	0.0005143	534.7717613525443	39.195	0.51101	39.195	39.032	39.543	0					22	11	3	0	0	0	0.20551	1	15451	15451		60.972	2.19	1	403740			25997	6646	17424	17486	26343	26343					-0.0023024979368528875
LSYQSVFL	8	Unmodified	_LSYQSVFL_					0	0	0		GPR137B|p.C85Y|1|0.27|ENSG00000077585|chr1:236142876-236142876|G/A|missense_variant;ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	GPR137B|p.C85Y|1|0.27|ENSG00000077585|chr1:236142876-236142876|G/A|missense_variant	GPR137B|p.C85Y|1|0.27|ENSG00000077585|chr1:236142876-236142876|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7579040527344	2	478.758018	955.501483	0.88475	0.00042358	-0.90971	-0.00043553	-0.024956	-1.1948E-05	478.7573883715431	40.581	0.27612	40.581	40.486	40.762	0					13	6	3	0	0	0	0.52345	1	16134	16134		57.811	2.3071	1	224610			25998	1588	17425	17487	26344	26344					0.021952666659672104
LSYTIIQQ	8	Unmodified	_LSYTIIQQ_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2693786621094	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.705	1	29.705	29.205	30.205	0								0	0	0	1.7419	1	9695	9695		23.042	13.337	1				25999	7333	17426	17488	26345	26345					0.03926651694678185
LSYTRTITP	9	Unmodified	_LSYTRTITP_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.1970520019531	3	351.197596	1050.57096	0.70195	0.00024652	-2.5014	-0.0008785	-1.7995	-0.00063198	351.1967099065775	19.223	0.1981	19.223	19.124	19.322	0					9	4	3	0	0	0	0.35021	1	5777	5777		45.972	6.7194	1	1237200	+		26000	13831	17427	17489	26346	26346					0.04769725614710296
LTAATLPKV	9	Unmodified	_LTAATLPKV_					0	0	0		ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.28900146484375	2	457.289485	912.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.599	1	32.599	32.099	33.099	0								0	0	0	0.36609	1	11353	11353		20.947	2.6225	1				26001	10998	17428	17490	26347	26347					0.10463832454001931
LTAATLPKVK	10	Unmodified	_LTAATLPKVK_					0	0	0		ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.3375244140625	2	521.336967	1040.65938	-1.3269	-0.00069174	1.6896	0.00088085	0.36274	0.00018911	521.3379016024551	33.074	0.15712	33.074	32.99	33.147	0					14	5	3	0	0	0	0.15878	1	11569	11569		85.161	10.906	1	254480			26002	10998	17429	17491	26348	26348					0.14067765925165077
LTAEVPLR	8	Unmodified	_LTAEVPLR_					0	0	0		ENST00000344642.6_1_1:22142525-22147999:+|nuORF	ENST00000344642.6_1_1:22142525-22147999:+|nuORF	ENST00000344642.6_1_1:22142525-22147999:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.7728271484375	2	449.77146	897.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.816	1	28.816	28.316	29.316	0								0	0	0	1.7419	1	10602	10602		35.201	0	1				26003	8756	17430	17492	26349	26349					0.07550375277139665
LTAGKALSV	9	Unmodified	_LTAGKALSV_					0	0	0		ENST00000289805.9_1_16:89762860-89763136:-|nuORF	ENST00000289805.9_1_16:89762860-89763136:-|nuORF	ENST00000289805.9_1_16:89762860-89763136:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2659912109375	2	430.26601	858.517468	-0.24619	-0.00010593	-0.34183	-0.00014708	-0.58802	-0.000253	430.26584671229625	29.585	0.17908	29.585	29.486	29.666	0					12	6	3	0	0	0	0.50858	1	9342	9342		31.53	0	1	111770			26004	8431	17431	17493	26350	26350					0.08254972902841473
LTAHAIIGY	9	Unmodified	_LTAHAIIGY_					0	0	0		tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.77069091796875	2	479.77146	957.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.647	1	31.647	31.147	32.147	0								0	0	0	0.20652	1	10922	10922		50.025	0	1				26005	23006	17432	17494	26351	26351					0.047903752771503605
LTAHGQHLR	9	Unmodified	_LTAHGQHLR_					0	0	0			REV__ENSG00000283288|ENST00000637503|SMIM33	REV__ENSG00000283288|ENST00000637503|SMIM33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7913208007812	2	516.788507	1031.56246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.515	1	29.515	29.015	30.015	0								0	0	0	0.080575	1	10549	10549		60.972	0	1		+		26006	17851	17433	17495	26352	26352					0.04794216488744496
LTAKPSHSK	9	Unmodified	_LTAKPSHSK_					0	0	0		ENST00000579925.5_1_17:56586124-56586178:-|nuORF	ENST00000579925.5_1_17:56586124-56586178:-|nuORF	ENST00000579925.5_1_17:56586124-56586178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.77923583984375	2	484.779816	967.545079	0.035403	1.7163E-05	-1.1858	-0.00057486	-1.1504	-0.00055769	484.77926276124686	13.64	0.093314	13.64	13.587	13.681	0					11	5	3	0	0	0	0.39215	1	2692	2692		42.396	5.237	1	197450			26007	10864	17434	17496	26353	26353					0.06000876163091107
LTALTKMAEL	10	Unmodified	_LTALTKMAEL_					0	0	0			REV__ENSG00000124275|ENST00000440940|MTRR	REV__ENSG00000124275|ENST00000440940|MTRR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.8124389648438	2	545.812467	1089.61038	0.50345	0.00027479	0.65435	0.00035715	1.1578	0.00063195	545.8130561536369	37.209	0.10718	37.209	37.163	37.27	0					10	5	2	0	0	0	0.48255	1	12584	12584		42.864	14.982	1	123760	+		26008	14388	17435	17497	26354	26354					0.06916109573921858
LTASLFTHS	9	Unmodified	_LTASLFTHS_					0	0	0		nc|ENSG00000125740|P53539-8|FOSB;ENST00000587358.1_1_19:45974364-45976267:+|nuORF;nc|ENSG00000125740|P53539-5|FOSB;nc|ENSG00000125740|P53539-10|FOSB;nc|ENSG00000125740|P53539-3|FOSB;nc|ENSG00000125740|P53539-2|FOSB;ENSG00000125740|ENST00000353609|FOSB	nc|ENSG00000125740|P53539-8|FOSB	nc|ENSG00000125740|P53539-8|FOSB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7600402832031	2	488.758549	975.502546	2.6076	0.0012745	-0.15739	-7.6925E-05	2.4502	0.0011975	488.7586894741369	28.384	0.81247	28.384	27.729	28.542	0					54	16	5	0	0	0	0.13519	1	10242	10242		71.296	2.5089	1	4250400			26009	3433	17436	17498	26355	26355					0.013814810348435458
LTASRRSSTA	10	Unmodified	_LTASRRSSTA_					0	0	0		EPS8L3|p.N273Tfs*33|1|0.43|ENSG00000198758|chr1:109757958-109757958|T/-|frameshift_variant	EPS8L3|p.N273Tfs*33|1|0.43|ENSG00000198758|chr1:109757958-109757958|T/-|frameshift_variant	EPS8L3|p.N273Tfs*33|1|0.43|ENSG00000198758|chr1:109757958-109757958|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.29052734375	2	525.288537	1048.56252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.195	1	15.195	14.695	15.695	0								0	0	0	0.3998	1	3357	3357		19.104	6.8967	1				26010	11110	17437	17499	26356	26356					0.040181716980896454
LTASTVIL	8	Unmodified	_LTASTVIL_					0	0	0			REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF	REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.25494384765625	2	409.255111	816.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.167	1	40.167	39.667	40.667	0								0	0	0	1.7419	1	15824	15824		44.531	0	1		+		26011	13139	17438	17500	26357	26357					0.08008168154276518
LTATVLNVY	9	Unmodified	_LTATVLNVY_					0	0	0		ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.284423828125	2	497.2844	992.554247	0.70791	0.00035203	-0.74067	-0.00036832	-0.032762	-1.6292E-05	497.2837178169982	40.012	0.30455	40.012	39.88	40.185	0					34	11	4	0	0	0	0.37197	1	15224	15224		44.117	3.3386	1	1258800			26012	6405	17439	17501	26358	26358					0.05767224728765541
LTAVELQTFP	10	Unmodified	_LTAVELQTFP_					0	0	0			REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant	REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.54315185546875	3	373.541252	1117.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.474	1	52.474	51.974	52.974	0								0	0	0	0.4201	1	20374	20374		21.686	0	1		+		26013	14840	17440	17502	26359	26359					0.047828789289496854
LTCATINLDPV	11	Unmodified	_LTCATINLDPV_					0	0	0			REV__BDKRB1|p.I190T|1|0.06|ENSG00000100739|chr14:96264251-96264251|T/C|missense_variant	REV__BDKRB1|p.I190T|1|0.06|ENSG00000100739|chr14:96264251-96264251|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.300537109375	2	580.305007	1158.59546	-1.6894	-0.00098039	-0.90936	-0.00052771	-2.5988	-0.0015081	580.8068507033673	25.398	0.62218	25.398	24.986	25.608	0					28	15	3	0	0	0	0.70609	1	8007	8007		27.047	0.3544	1	157410	+		26014	12284	17441	17503	26360	26360					0.02250617705908553
LTCDSNCCTD	10	Unmodified	_LTCDSNCCTD_					0	0	0			REV__ADAM17|p.V566Afs*58|1|0.4|ENSG00000151694|chr2:9497197-9497200|CAAA/-|frameshift_variant	REV__ADAM17|p.V566Afs*58|1|0.4|ENSG00000151694|chr2:9497197-9497200|CAAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.6810913085938	2	537.680467	1073.34638	0.22543	0.00012121	-0.53836	-0.00028946	-0.31293	-0.00016826	537.681127418425	25.989	1.4374	25.989	24.93	26.368	0					109	32	5	0	0	0	0.66185	1	8880	8880		26.693	4.733	1	1524800	+		26015	12064	17442	17504	26361	26361					-0.18735836584596655
LTCLKRNM	8	Carbamidomethyl (C),Oxidation (M)	_LTC(Carbamidomethyl (C))LKRNM(Oxidation (M))_	LTC(1)LKRNM	LTCLKRNM(1)	LTC(57)LKRNM	LTCLKRNM(57)	0	1	1			REV__ENSG00000205329|ENST00000641740|OR6C3	REV__ENSG00000205329|ENST00000641740|OR6C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.27587890625	2	526.272986	1050.53142	1.7666	0.0009297	4.3773	0.0023037	6.1439	0.0032333	526.2755275222324	37.996	0.17934	37.996	37.902	38.081	0					11	6	2	0	0	0	0.53424	1	14901	14901		56.721	6.6965	1	267610	+		26016	17521	17443	17505	26362	26362	619	661			0.008175590679911693
LTCLLGGKQC	10	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))LLGGKQC_	LTC(1)LLGGKQC		LTC(33)LLGGKQC(-33)		0	1	0			REV__ENST00000527653.1_1_8:145139038-145139470:+|nuORF	REV__ENST00000527653.1_1_8:145139038-145139470:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2858276367188	2	546.780644	1091.54674	3.8113	0.002084	-1.4952	-0.00081755	2.3161	0.0012664	547.2822927060992	40.647	0.64045	40.647	40.376	41.016	0					28	12	3	0	0	0	0.28723	1	16207	16207		68.787	6.6794	2	734970	+		26017	17360	17444	17506	26363	26363	616				0.004624258651801938
LTCLTELIK	9	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))LTELIK_	LTC(1)LTELIK		LTC(74)LTELIK		0	1	0			REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.813720703125	2	545.812467	1089.61038	1.7363	0.00094768	-0.53021	-0.0002894	1.2061	0.00065829	545.8122667329395	37.161	0.22942	37.161	37.086	37.316	0					26	12	3	0	0	0	0.12239	1	12163	12163		74.255	12.148	1	255680	+		26018	15694	17445	17507	26364	26364	571				0.06916109573899121
LTCLTELIK	9	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))LTELIK_	LTC(1)LTELIK		LTC(110)LTELIK		0	1	0			REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.8131713867188	2	545.812467	1089.61038	1.8639	0.0010173	-1.6684	-0.00091066	0.1954	0.00010665	545.8118697298856	37.464	0.41464	37.464	37.358	37.773	0					35	12	4	0	0	0	0.025517	1	14182	14182		113.41	9.3548	1	2507200	+		26019	15694	17445	17507	26365	26365	571				0.06916109573899121
LTCLTELIK	9	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))LTELIK_	LTC(1)LTELIK		LTC(70)LTELIK		0	1	0			REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8128662109375	2	545.812467	1089.61038	1.9002	0.0010372	-1.9198	-0.0010479	-0.019589	-1.0692E-05	545.8119285430943	37.422	0.33137	37.422	37.328	37.659	0					27	10	3	0	0	0	0.1424	1	14627	14627		69.628	9.5094	1	541050	+		26020	15694	17445	17507	26366	26366	571				0.06916109573899121
LTCLTELIK	9	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))LTELIK_	LTC(1)LTELIK		LTC(110)LTELIK		0	1	0			REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	REV__ENST00000488968.1_1_8:21953801-21954290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.812744140625	2	545.812467	1089.61038	0.56093	0.00030616	-0.30173	-0.00016469	0.2592	0.00014147	545.812557003335	37.374	0.45619	37.374	37.268	37.725	0					28	9	5	0	0	0	0.025517	1	14592	14592		113.41	9.3548	1	2496600	+		26021	15694	17445	17507	26367	26367	571				0.06916109573899121
LTCPPTKVYK	10	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))PPTKVYK_	LTC(1)PPTKVYK		LTC(72)PPTKVYK		0	1	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	603.8311767578125	2	603.831191	1205.64783	0.14717	8.8863E-05	0.29516	0.00017823	0.44232	0.00026709	603.831264777253	22.468	0.30918	22.468	22.384	22.694	0					14	9	2	0	0	0	0.25899	1	6362	6362		72.243	29.847	1	194980			26022	3057	17446	17508	26368	26368	114				0.05323200839529818
LTCPPTKVYK	10	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))PPTKVYK_	LTC(1)PPTKVYK		LTC(86)PPTKVYK		0	1	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	603.831298828125	2	603.831191	1205.64783	-0.39463	-0.00023829	0.86158	0.00052025	0.46695	0.00028196	603.8319624522669	22.763	0.63079	22.763	22.633	23.263	0					33	15	3	0	0	0	0.15477	1	7448	7448		85.862	16.234	1	1147300			26023	3057	17446	17508	26369	26369	114				0.05323200839529818
LTCSERGAVTY	11	Unmodified	_LTCSERGAVTY_					0	0	0			REV__CON__Q29RQ1	REV__CON__Q29RQ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2901611328125	2	600.289888	1198.56522	0.97964	0.00058807	-0.57973	-0.000348	0.39991	0.00024006	600.2894805472325	38.143	3.2289	38.143	38.012	41.241	0					305	114	6	0	0	0	0.22894	1	15062	15062		70.816	3.8543	1	32392000	+	+	26024	12606	17447	17509	26370	26370					-0.026117409592416152
LTCVTKKKM	9	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))VTKKKM_	LTC(1)VTKKKM		LTC(100)VTKKKM		0	1	0			REV__SCAF11|p.Q86Rfs*17|1|0.08|ENSG00000139218|chr12:45951691-45951691|G/-|frameshift_variant	REV__SCAF11|p.Q86Rfs*17|1|0.08|ENSG00000139218|chr12:45951691-45951691|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8164672851562	2	554.814487	1107.61442	3.5829	0.0019878	-0.49259	-0.0002733	3.0903	0.0017145	554.8141197619766	31.199	0.462	31.199	31.043	31.505	0					31	9	5	0	0	0	0.035062	1	11626	11626		104.06	104.06	1	9532900	+		26025	15016	17448	17510	26371	26371	557				0.06491875795995838
LTCVVMFLVV	10	Unmodified	_LTCVVMFLVV_					0	0	0		ENSG00000108433|ENST00000640051|GOSR2	ENSG00000108433|ENST00000640051|GOSR2	ENSG00000108433|ENST00000640051|GOSR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8195190429688	2	562.316331	1122.61811	3.4696	0.001951	-1.2266	-0.00068975	2.2429	0.0012612	562.3159573016164	45.273	0.13806	45.273	45.208	45.346	0					11	6	2	0	0	0	0.65213	1	18133	18133		27.882	4.8398	1	37150			26026	2529	17449	17511	26372	26372					0.06170545569852948
LTDFDTYR	8	Unmodified	_LTDFDTYR_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.1662292480469	3	344.166185	1029.47673	0.50543	0.00017395	-0.19191	-6.6049E-05	0.31352	0.0001079	344.1660767322675	17.497	0.20385	17.497	17.415	17.619	0					10	5	3	0	0	0	0.75243	1	4957	4957		21.96	1.013	1	455370	+		26027	16716	17450	17512	26373	26373					-0.036834132074318404
LTDGVGRR	8	Unmodified	_LTDGVGRR_					0	0	0		CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant;CUBN|p.N1904Tfs*7|1|0.22|ENSG00000107611|chr10:16938985-16938985|T/-|frameshift_variant	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2552185058594	2	437.248683	872.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.815	1	28.815	28.315	29.315	0								0	0	0	1.7419	1	10601	10601		42.396	3.59	1				26028	715	17451	17513	26374	26374					0.041471498147643615
LTDKHSDK	8	Unmodified	_LTDKHSDK_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.24554443359375	2	472.245806	942.47706	-0.74882	-0.00035363	0.35212	0.00016629	-0.3967	-0.00018734	472.2458684846886	23.73	0.22293	23.73	23.604	23.827	0					13	7	2	0	0	0	0.46905	1	7146	7146		63.306	2.3343	1	308440			26029	7402	17452	17514	26375	26375					0.0035200651242348613
LTDLGKSLK	9	Unmodified	_LTDLGKSLK_					0	0	0		tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1	tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1	tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7977294921875	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.247	1	22.247	21.747	22.747	0								0	0	0	0.22284	1	6594	6594		47.657	1.6851	1				26030	22789	17453	17515	26376	26376					0.09294913620090028
LTDLGKSLK	9	Unmodified	_LTDLGKSLK_					0	0	0		tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1	tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1	tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7973327636719	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.363	1	22.363	21.863	22.863	0								0	0	0	0.23445	1	7428	7428		45.972	0	1				26031	22789	17453	17515	26377	26377					0.09294913620090028
LTDLNLTK	8	Unmodified	_LTDLNLTK_					0	0	0		ENSG00000166897|ENST00000402918|ELFN2	ENSG00000166897|ENST00000402918|ELFN2	ENSG00000166897|ENST00000402918|ELFN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2682189941406	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.376	1	33.376	32.876	33.876	0								0	0	0	1.7419	1	11706	11706		37.159	2.9866	1				26032	5942	17454	17516	26378	26378					0.06134651694662807
LTDLRYKV	8	Unmodified	_LTDLRYKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53399658203125	3	336.53432	1006.58113	-0.7027	-0.00023648	0.91078	0.00030651	0.20808	7.0026E-05	336.53448631488845	39.063	0.32675	39.063	38.934	39.26	0					23	18	2	0	0	0	0.75243	1	13172	13172		21.96	7.8228	1	47442			26033	5134;11594	17455	17517	26379	26379					0.07810333339944009
LTDNSPDQGP	10	Unmodified	_LTDNSPDQGP_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000552861.5_1_12:95452077-95461160:-|nuORF	ENSG00000120798|ENST00000333003|NR2C1	ENSG00000120798|ENST00000333003|NR2C1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.23388671875	2	522.235635	1042.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.529	1	10.529	10.029	11.029	0								0	0	0	0.4201	1	2006	2006		13.454	0.64233	1				26034	3192	17456	17518	26380	26380					-0.06281208938048621
LTDPRCWYF	9	Unmodified	_LTDPRCWYF_					0	0	0		NYAP2|p.K316Rfs*57|1|0.27|ENSG00000144460|chr2:225582356-225582356|C/-|frameshift_variant	NYAP2|p.K316Rfs*57|1|0.27|ENSG00000144460|chr2:225582356-225582356|C/-|frameshift_variant	NYAP2|p.K316Rfs*57|1|0.27|ENSG00000144460|chr2:225582356-225582356|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.7783813476562	2	600.778959	1199.54336	-0.18196	-0.00010932	-0.32284	-0.00019395	-0.5048	-0.00030327	600.7788348572323	17.138	0.29859	17.138	17.045	17.344	0					15	7	3	0	0	0	0.42902	1	4776	4776		39.253	4.1008	1	319860			26035	11867	17457	17519	26381	26381					-0.04842500917197867
LTDQFAKQI	9	Unmodified	_LTDQFAKQI_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2933349609375	2	532.292756	1062.57096	0.12367	6.5831E-05	0.81743	0.00043511	0.94111	0.00050094	532.2932057149258	28.16	0.45448	28.16	28.032	28.486	0					16	11	2	0	0	0	0.037924	1	9927	9927		101.25	8.0572	1	895380	+		26036	12425	17458	17520	26382	26382					0.04217725614716983
LTDQVSVI	8	Unmodified	_LTDQVSVI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7474365234375	2	437.74765	873.480748	0.021456	9.3924E-06	-0.1442	-6.3123E-05	-0.12274	-5.3731E-05	437.74767328804626	29.065	0.37777	29.065	28.818	29.196	0					19	9	3	0	0	0	0.2498	1	10331	10331		101.6	5.4103	1	574900			26037	1957	17459	17521	26383	26383					0.03894676286279264
LTDQVSVI	8	Unmodified	_LTDQVSVI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7480163574219	2	437.74765	873.480748	0.61246	0.0002681	-0.73907	-0.00032352	-0.1266	-5.542E-05	437.74729637214637	29.048	0.4885	29.048	28.846	29.334	0					29	12	4	0	0	0	0.25873	1	10307	10307		96.19	8.494	1	3969200			26038	1957	17459	17521	26384	26384					0.03894676286279264
LTDQVSVI	8	Unmodified	_LTDQVSVI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7475891113281	2	437.74765	873.480748	-0.39969	-0.00017496	0.20109	8.8025E-05	-0.1986	-8.6937E-05	437.7477465116512	29.028	0.52991	29.028	28.778	29.308	0					27	11	4	0	0	0	0.2498	1	10691	10691		101.6	5.4103	1	5395900			26039	1957	17459	17521	26385	26385					0.03894676286279264
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7814025878906	2	491.782025	981.549496	-0.15778	-7.7595E-05	-0.15687	-7.7148E-05	-0.31466	-0.00015474	491.781915164633	25.189	0.56123	25.189	24.92	25.481	0					45	18	4	0	0	0	0.034359	2	7483	7483;7634		104.75	22.442	1	1183600			26040	1545;6995;2493;7397;7857	17460	17522	26386;26387	26386					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7818603515625	2	491.782025	981.549496	-0.060435	-2.9721E-05	-0.33493	-0.00016471	-0.39537	-0.00019444	491.7818602720861	25.511	0.46469	25.511	25.205	25.67	0					25	9	3	0	0	0	0.023928	1	8981	8981		115.49	35.781	1	1480600			26041	1545;6995;2493;7397;7857	17460	17522	26388	26388					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7816162109375	2	491.782025	981.549496	0.58199	0.00028621	-0.97117	-0.0004776	-0.38918	-0.00019139	491.78150245427804	25.5	0.894	25.5	24.991	25.885	0					43	16	4	0	0	0	0.028876	1	8974	8974		110.12	30.407	1	5462300			26042	1545;6995;2493;7397;7857	17460	17522	26389	26389					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.7821350097656	2	491.782025	981.549496	0.482	0.00023704	-0.55678	-0.00027381	-0.074779	-3.6775E-05	491.78170142033537	25.315	0.49121	25.315	25.012	25.503	0					32	11	4	0	0	0	0.12239	2	8105	7943;8105		74.255	8.6557	1	729920			26043	1545;6995;2493;7397;7857	17460	17522	26390;26391	26391					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.78204345703125	2	491.782025	981.549496	-0.052024	-2.5585E-05	-0.15878	-7.8086E-05	-0.21081	-0.00010367	491.7819050097118	25.301	0.50584	25.301	25.042	25.548	0					31	12	4	0	0	0	0.037569	1	7956	7956		101.6	16.241	1	1486100			26044	1545;6995;2493;7397;7857	17460	17522	26392	26392					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.78173828125	2	491.782025	981.549496	-2.6784	-0.0013172	2.4904	0.0012247	-0.18807	-9.2488E-05	491.7833664297452	25.297	0.26901	25.297	25.159	25.428	0					14	6	3	0	0	0	0.21263	1	8005	8005		60.118	8.7828	1	102110			26045	1545;6995;2493;7397;7857	17460	17522	26393	26393					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7820129394531	2	491.782025	981.549496	-0.57672	-0.00028362	0.18845	9.2678E-05	-0.38827	-0.00019094	491.78208836289065	25.423	0.80568	25.423	25.06	25.866	0					40	14	4	0	0	0	0.012915	2	8981	8814;8981		134.81	49.451	1	7261000			26046	1545;6995;2493;7397;7857	17460	17522	26394;26395	26395					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7818298339844	2	491.782025	981.549496	0.82162	0.00040406	-1.1939	-0.00058713	-0.37227	-0.00018307	491.7813981886955	25.405	0.62483	25.405	25.093	25.718	0					41	12	4	0	0	0	0.0073253	2	8830	8830;9001		148.04	57.673	1	8554300			26047	1545;6995;2493;7397;7857	17460	17522	26396;26397	26396					0.057983405859772574
LTECLRRHK	9	Unmodified	_LTECLRRHK_					0	0	0		ENSG00000171773|ENST00000301944|NXNL1	ENSG00000171773|ENST00000301944|NXNL1	ENSG00000171773|ENST00000301944|NXNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.88494873046875	3	385.885358	1154.63425	-0.76631	-0.00029571	-0.13123	-5.064E-05	-0.89754	-0.00034635	385.885210071899	28.53	0.19772	28.53	28.45	28.647	0					15	7	3	0	0	0	0.41113	1	9208	9208		40.778	4.3314	1	112580			26048	6318	17461	17523	26398	26398					0.06311387850951178
LTEEKESI	8	Unmodified	_LTEEKESI_					0	0	0			REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF	REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.74822998046875	2	474.747847	947.481142	0.71722	0.0003405	-0.13389	-6.3563E-05	0.58333	0.00027694	474.74785773636586	25.457	0.7533	25.457	25.247	26	0					36	13	6	0	0	0	0.41701	1	8900	8900		68.787	2.9837	1	9755700	+		26049	19726	17462	17524	26399	26399					0.005300512154803982
LTEGERGIE	9	Unmodified	_LTEGERGIE_					0	0	0			REV__tr|U7SLY5|U7SLY5_FUSNUCitratelyasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01987PE=3SV=1	REV__tr|U7SLY5|U7SLY5_FUSNUCitratelyasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01987PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.25628662109375	2	502.256371	1002.49819	-2.081	-0.0010452	2.2645	0.0011373	0.18348	9.2154E-05	502.2576997767372	26.782	0.15056	26.782	26.67	26.82	0					5	3	2	0	0	0	0.16002	1	8674	8674		66.429	0.6261	1	60414	+		26050	21781	17463	17525	26400	26400					-0.0029602817869545106
LTEHNAHIQ	9	Unmodified	_LTEHNAHIQ_					0	0	0			REV__ENSG00000185504|ENST00000327787|FAAP100	REV__ENSG00000185504|ENST00000327787|FAAP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7698364257812	2	531.76998	1061.52541	0.28839	0.00015336	-0.69567	-0.00036994	-0.40728	-0.00021658	531.769364616344	28.453	0.25666	28.453	28.308	28.565	0					12	5	4	0	0	0	0.055856	1	10413	10413		93.195	10.89	1	487330	+		26051	17030	17464	17526	26401	26401					-0.0028949984766768466
LTEIFRDR	8	Unmodified	_LTEIFRDR_					0	0	0			REV__tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	REV__tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.52978515625	3	350.529458	1048.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.873	1	17.873	17.373	18.373	0								0	0	0	1.7419	1	4568	4568		6.3127	1.0925	1		+		26052	21695	17465	17527	26402	26402					0.044202611917853574
LTEIGERGANL	11	Unmodified	_LTEIGERGANL_					0	0	0		ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;ABCC5|p.L1090Cfs*26|1|0.47|ENSG00000114770|chr3:183947469-183947469|A/-|frameshift_variant;ABCC5|p.L1090Vfs*62|2|0.19|ENSG00000114770|chr3:183947469-183947470|AA/-|frameshift_variant;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant	ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.5467529296875	3	391.547177	1171.6197	-0.15668	-6.1348E-05	-0.73525	-0.00028789	-0.89194	-0.00034924	391.54682637389953	19.322	0.13443	19.322	19.234	19.369	0					5	3	2	0	0	0	0.64562	1	5235	5235		28.577	0	1	80006			26053	16	17466	17528	26403	26403					0.04075594183814246
LTEIKGSVY	9	Unmodified	_LTEIKGSVY_					0	0	0		ENST00000471919.1_1_6:116981518-116989864:-|nuORF;ZUFSP|p.N219Kfs*9|1|0.45|ENSG00000153975|chr6:116660749-116660750|-/T|frameshift_variant;ENSG00000153975|ENST00000368576|ZUP1	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2818908691406	2	505.281857	1008.54916	0.1115	5.6338E-05	-0.069338	-3.5035E-05	0.04216	2.1303E-05	505.2817143634792	33.509	0.16585	33.509	33.414	33.58	0					7	4	2	0	0	0	0.30951	1	11773	11773		49.442	0	1	104580			26054	5066	17467	17529	26404	26404					0.04522920866145341
LTEIPTIRK	9	Unmodified	_LTEIPTIRK_					0	0	0			REV__ENSG00000064393|ENST00000406875|HIPK2	REV__ENSG00000064393|ENST00000406875|HIPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.8326416015625	2	535.832049	1069.64954	0.29153	0.00015621	0.23887	0.000128	0.5304	0.00028421	535.832121006174	23.687	0.21589	23.687	23.529	23.745	0					7	4	2	0	0	0	0.16002	1	8206	8206		66.429	2.222	1	207150	+		26055	13104	17468	17530	26405	26405					0.11750577919792704
LTEKKEKI	8	Unmodified	_LTEKKEKI_					0	0	0		BCAS3|p.E56K|1|0.3|ENSG00000141376|chr17:60689713-60689713|G/A|missense_variant	BCAS3|p.E56K|1|0.3|ENSG00000141376|chr17:60689713-60689713|G/A|missense_variant	BCAS3|p.E56K|1|0.3|ENSG00000141376|chr17:60689713-60689713|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.80535888671875	2	494.8055	987.596446	-0.065281	-3.2301E-05	-0.07798	-3.8585E-05	-0.14326	-7.0886E-05	494.8052674222725	28.365	0.18923	28.365	28.296	28.485	0					13	6	3	0	0	0	0.34592	1	8846	8846		77.318	0	1	233400			26056	285	17469	17531	26406	26406					0.10215200137145075
LTELDLSH	8	Unmodified	_LTELDLSH_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.24273681640625	2	464.242732	926.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.01	1	21.01	20.51	21.51	0								0	0	0	1.7419	1	6611	6611		50.025	0	1				26057	6465	17470	17532	26407	26407					0.004734882809088958
LTELKSVAL	9	Unmodified	_LTELKSVAL_					0	0	0			REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant	REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2998046875	2	487.30005	972.585547	-1.2439	-0.00060616	1.018	0.00049608	-0.22589	-0.00011008	487.3004798140617	39.154	0.18422	39.154	39.064	39.248	0					14	10	2	0	0	0	0.46194	1	13176	13176		36.447	2.2742	1	85338	+		26058	13683	17471	17533	26408	26408					0.09815797762848888
LTELYLSRL	9	Unmodified	_LTELYLSRL_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.88427734375	3	369.88513	1106.63356	0.45708	0.00016907	-0.1664	-6.1549E-05	0.29068	0.00010752	369.88493884408103	23.303	1.3265	23.303	23.123	24.45	0					87	30	4	0	0	0	0.36892	1	7844	7844		44.377	0	1	24641000			26059	2269	17472	17534	26409	26409					0.08450871682885008
LTENPQVA	8	Unmodified	_LTENPQVA_					0	0	0		nc|ENSG00000158423|Q8N443-3|RIBC1;ENSG00000158423|ENST00000375327|RIBC1	nc|ENSG00000158423|Q8N443-3|RIBC1	nc|ENSG00000158423|Q8N443-3|RIBC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2296142578125	2	436.229625	870.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.898	1	37.898	37.398	38.398	0								0	0	0	1.7419	1	14396	14396		37.159	2.9866	1				26060	5262	17473	17535	26410	26410					0.004292191094236841
LTENSHLFL	9	Unmodified	_LTENSHLFL_					0	0	0		ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant	ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant	ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2849731445312	2	537.284931	1072.55531	1.8723	0.001006	-1.6645	-0.00089432	0.20779	0.00011164	537.284070954756	41.957	0.18096	41.957	41.916	42.097	0					13	8	2	0	0	0	0.39123	1	16482	16482		42.474	0.078325	1	128780			26061	23138	17474	17536	26411	26411					0.021934390976412033
LTESAISQSP	10	Unmodified	_LTESAISQSP_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7631225585938	2	516.764029	1031.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.666	1	23.666	23.166	24.166	0								0	0	0	0.32041	1	6880	6880		47.657	1.6851	1		+		26062	17236	17475	17537	26412	26412					-0.0009916138151311316
LTESEVQPR	9	Unmodified	_LTESEVQPR_					0	0	0		ENST00000351773.7_1_10:38384465-38384722:+|nuORF	ENST00000351773.7_1_10:38384465-38384722:+|nuORF	ENST00000351773.7_1_10:38384465-38384722:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.780029296875	2	529.77747	1057.54039	3.4453	0.0018252	1.6213	0.00085895	5.0666	0.0026842	529.7783640696562	41.853	0.39137	41.853	41.703	42.095	0					30	11	4	0	0	0	0.41113	1	16638	16638		40.778	0.71999	1	844590			26063	8774	17476	17538	26413	26413					0.01391947229649304
LTESTDLRT	9	Unmodified	_LTESTDLRT_					0	0	0			REV__ENST00000310823.7_1_2:9629156-9629234:-|nuORF	REV__ENST00000310823.7_1_2:9629156-9629234:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.270263671875	2	518.269478	1034.5244	1.5802	0.00081899	-1.4851	-0.00076966	0.095172	4.9325E-05	518.2693203029165	31.709	0.31285	31.709	31.505	31.818	0					14	6	4	0	0	0	0.11898	1	11898	11898		58.782	4.0056	1	504090	+		26064	18270	17477	17539	26414	26414					0.008522409927763874
LTETTSASL	9	Unmodified	_LTETTSASL_					0	0	0			REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7403259277344	2	461.740022	921.465492	0.72214	0.00033344	-0.0067168	-3.1014E-06	0.71542	0.00033034	461.7400184476901	24.254	0.26373	24.254	24.146	24.41	0					13	5	3	0	0	0	0.37197	1	8455	8455		44.117	44.117	1	1619800	+		26065	12543	17478	17540	26415	26415					0.0016176469844140229
LTFCLPMIH	9	Unmodified	_LTFCLPMIH_					0	0	0			REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.77783203125	2	537.777373	1073.54019	1.0215	0.00054935	-0.29145	-0.00015674	0.73007	0.00039262	537.7771535700125	35.44	0.12861	35.44	35.378	35.507	0					7	4	2	0	0	0	0.39123	1	12634	12634		42.474	5.3154	1	45922	+		26066	21974	17479	17541	26416	26416					0.0063653270444774535
LTFNECIYF	9	Unmodified	_LTFNECIYF_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.2656860351562	2	575.267893	1148.52123	0.055943	3.2182E-05	-3.0815	-0.0017727	-3.0255	-0.0017405	575.265970827203	29.504	0.19124	29.504	29.434	29.625	0					11	7	2	0	0	0	0.59802	1	9611	9611		21.96	0	1	43574	+		26067	14527	17480	17542	26417	26417					-0.047087253856034295
LTFNKRCH	8	Unmodified	_LTFNKRCH_					0	0	0			REV__THAP6|p.F138Lfs*7|1|0.06|ENSG00000174796|chr4:75521857-75521857|T/-|frameshift_variant	REV__THAP6|p.F138Lfs*7|1|0.06|ENSG00000174796|chr4:75521857-75521857|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.76776123046875	2	509.766186	1017.51782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.741	1	20.741	20.241	21.241	0								0	0	0	1.7419	1	5889	5889		31.955	3.7006	1		+		26068	16584	17481	17543	26418	26418					0.009760693510543206
LTFTQKWN	8	Unmodified	_LTFTQKWN_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000603132.1_1_12:55196819-55197167:-|nuORF;ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.273681640625	2	519.274367	1036.53418	1.1282	0.00058583	-0.93078	-0.00048333	0.19739	0.0001025	519.2737505218195	34.775	0.40073	34.775	34.585	34.986	0					15	11	2	0	0	0	0.78142	1	13425	13425		23.042	0	1	72660			26069	1604	17482	17544	26419	26419					0.017374737888076197
LTFVFGANVE	10	Unmodified	_LTFVFGANVE_					0	0	0		nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1	nc|ENSG00000007062|O43490-5|PROM1	nc|ENSG00000007062|O43490-5|PROM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7898559570312	2	548.787307	1095.56006	3.8028	0.0020869	0.66683	0.00036595	4.4696	0.0024529	548.7875749437957	40.917	0.66502	40.917	40.735	41.4	0					19	13	2	0	0	0	0.55603	1	16294	16294		39.253	3.6345	1	418960			26070	993	17483	17545	26420	26420					0.016103232404248047
LTFVSSGCQ	9	Unmodified	_LTFVSSGCQ_					0	0	0		ENSG00000182591|ENST00000332378|KRTAP11-1	ENSG00000182591|ENST00000332378|KRTAP11-1	ENSG00000182591|ENST00000332378|KRTAP11-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2251892089844	2	471.223485	940.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.468	1	24.468	23.968	24.968	0								0	0	0	0.24724	1	7633	7633		44.117	6.9577	1				26071	6906	17484	17546	26421	26421					-0.04018140625248634
LTGAGLLQG	9	Unmodified	_LTGAGLLQG_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.2423095703125	2	415.242535	828.470518	-1.4718	-0.00061115	1.4078	0.00058459	-0.063972	-2.6564E-05	415.24303334193695	21.014	0.24122	21.014	20.927	21.168	0					13	7	2	0	0	0	0.2873	1	6024	6024		51.335	5.3835	1	82923	+		26072	13548	17485	17547	26422	26422					0.04942113351705757
LTGDGLAHLQ	10	Unmodified	_LTGDGLAHLQ_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000473243.5_1_19:19758362-19760762:-|nuORF;ENST00000469641.5_1_19:19756247-19760762:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7749633789062	2	512.774731	1023.53491	3.1454	0.0016129	-2.3613	-0.0012108	0.7841	0.00040207	512.7733403785003	24.054	0.26566	24.054	23.996	24.262	0					11	5	3	0	0	0	0.25899	1	8258	8258		60.118	19.34	1	583420			26073	2392	17486	17548	26423	26423					0.024082684378413433
LTGDHKNL	8	Unmodified	_LTGDHKNL_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.24273681640625	2	449.243067	896.47158	-1.1804	-0.00053031	0.70465	0.00031656	-0.47579	-0.00021375	449.24336523121093	31.521	0.16456	31.521	31.426	31.591	0					11	6	2	0	0	0	0.73426	1	10475	10475		29.15	0	1	103030			26074	5246	17487	17549	26424	26424					0.019203277206202074
LTGDLCES	8	Unmodified	_LTGDLCES_					0	0	0			REV__ENST00000473451.1_1_3:49950446-49967283:-|nuORF	REV__ENST00000473451.1_1_3:49950446-49967283:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.1870422363281	2	419.186568	836.358584	1.0701	0.00044856	-0.069284	-2.9043E-05	1.0008	0.00041952	419.18650124198285	16.983	0.17163	16.983	16.9	17.071	0					6	4	2	0	0	0	0.57802	1	4722	4722		52.299	2.2746	1	203300	+		26075	19505	17488	17550	26425	26425					-0.06614108787584883
LTGGGGEREA	10	Unmodified	_LTGGGGEREA_					0	0	0		ENST00000262662.5_1_1:51434219-51434396:+|nuORF	ENST00000262662.5_1_1:51434219-51434396:+|nuORF	ENST00000262662.5_1_1:51434219-51434396:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.73455810546875	2	473.733063	945.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.356	1	38.356	37.856	38.856	0								0	0	0	0.29806	1	13721	13721		51.193	0	1				26076	8309	17489	17551	26426	26426					-0.023334680100106198
LTGGVWSL	8	Unmodified	_LTGGVWSL_					0	0	0		ENST00000546226.5_1_11:118963422-118963990:+|nuORF;ENST00000543543.5_1_11:118963098-118963990:+|nuORF;nc|ENSG00000256269|P08397-4|HMBS;ENST00000542044.5_1_11:118959775-118963990:+|nuORF;nc|ENSG00000256269|P08397-3|HMBS;nc|ENSG00000256269|P08397-2|HMBS;ENSG00000256269|ENST00000652429|HMBS	ENST00000546226.5_1_11:118963422-118963990:+|nuORF	ENST00000546226.5_1_11:118963422-118963990:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.7322082519531	2	416.731803	831.449054	1.055	0.00043966	-0.38303	-0.00015962	0.672	0.00028004	416.7316114905511	41.55	0.091148	41.55	41.477	41.568	0					4	2	2	0	0	0	0.6282	1	16536	16536		44.531	3.9584	1	42752			26077	8026	17490	17552	26427	26427					0.026587283229901004
LTGHRHRA	8	Unmodified	_LTGHRHRA_					0	0	0		ENST00000358157.2_1_9:91616444-91616663:+|nuORF	ENST00000358157.2_1_9:91616444-91616663:+|nuORF	ENST00000358157.2_1_9:91616444-91616663:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2685852050781	2	474.267742	946.52093	2.359	0.0011188	0.11279	5.3493E-05	2.4717	0.0011723	474.26766361283967	39.811	0.45629	39.811	39.5	39.957	0					27	10	4	0	0	0	0.65276	1	15710	15710		40.573	40.573	1	492390			26078	8829	17491	17553	26428	26428					0.04553080520088315
LTGKDLVVQ	9	Unmodified	_LTGKDLVVQ_					0	0	0			REV__nc|ENSG00000010165|Q8N6R0-2|METTL13	REV__nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.79010009765625	2	486.78985	971.565146	-1.2421	-0.00060466	0.22071	0.00010744	-1.0214	-0.00049722	486.7897803626015	23.681	0.28506	23.681	23.424	23.709	0					18	10	2	0	0	0	0.30841	1	7148	7148		49.536	0.094497	1	260350	+		26079	12889	17492	17554	26429	26429					0.07822627103041668
LTGNGLHY	8	Unmodified	_LTGNGLHY_					0	0	0			REV__CACNA1G|p.R516Gfs*48|1|0.26|ENSG00000006283|chr17:50575943-50575943|C/-|frameshift_variant	REV__CACNA1G|p.R516Gfs*48|1|0.26|ENSG00000006283|chr17:50575943-50575943|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.72589111328125	2	437.72451	873.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.673	1	21.673	21.173	22.173	0								0	0	0	1.7419	1	6324	6324		25.45	1.2474	1		+		26080	12314	17493	17555	26430	26430					-0.0073134382514581375
LTGPGGEL	8	Unmodified	_LTGPGGEL_					0	0	0			REV__TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant	REV__TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.2011413574219	2	372.200336	742.386119	-0.11832	-4.404E-05	3.4937	0.0013004	3.3754	0.0012563	372.2016474259148	31.036	0.17164	31.036	30.946	31.117	0					6	4	2	0	0	0	0.8006	1	10635	10635		20.482	4.8456	1	73708	+		26081	15142	17494	17556	26431	26431					0.004621625349614078
LTGPPGVGK	9	Unmodified	_LTGPPGVGK_					0	0	0		ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2449951171875	2	413.245078	824.475603	1.0258	0.00042391	-1.1134	-0.00046011	-0.087605	-3.6202E-05	413.24449428174245	23.794	0.74653	23.794	23.354	24.101	0					42	17	4	0	0	0	0.33044	1	7875	7875		47.657	5.1829	1	2304100			26082	4022	17495	17557	26432	26432					0.05634417214344012
LTGPPGVGK	9	Unmodified	_LTGPPGVGK_					0	0	0		ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2449035644531	2	413.245078	824.475603	1.048	0.00043308	-1.2885	-0.00053248	-0.24054	-9.94E-05	413.2444863494984	23.703	0.51923	23.703	23.344	23.864	0					24	10	3	0	0	0	0.25716	1	8218	8218		54.776	15.97	1	881500			26083	4022	17495	17557	26433	26433					0.05634417214344012
LTGPPGVGK	9	Unmodified	_LTGPPGVGK_					0	0	0		ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.24481201171875	2	413.245078	824.475603	-0.072616	-3.0008E-05	-0.10072	-4.1621E-05	-0.17333	-7.1629E-05	413.2449874756964	23.518	0.40223	23.518	23.251	23.653	0					19	9	3	0	0	0	0.47038	1	7166	7166		35.618	2.1027	1	258850			26084	4022	17495	17557	26434	26434					0.05634417214344012
LTGPPGVGK	9	Unmodified	_LTGPPGVGK_					0	0	0		ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.2449645996094	2	413.245078	824.475603	-0.41021	-0.00016952	1.8101	0.00074801	1.3999	0.0005785	413.2451163434496	23.736	0.70973	23.736	23.335	24.045	0					43	14	4	0	0	0	0.30951	1	8009	8009		49.442	4.9105	1	2204900			26085	4022	17495	17557	26435	26435					0.05634417214344012
LTGPPGVGK	9	Unmodified	_LTGPPGVGK_					0	0	0		ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	ENSG00000135778|ENST00000366628|NTPCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.24493408203125	2	413.245078	824.475603	0.95047	0.00039278	-1.0696	-0.00044201	-0.11914	-4.9235E-05	413.2445723258958	23.724	0.6123	23.724	23.318	23.931	0					31	12	4	0	0	0	0.14603	1	8025	8025		68.787	26.312	1	1753900			26086	4022	17495	17557	26436	26436					0.05634417214344012
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2811279296875	2	485.281137	968.547722	0.65955	0.00032007	-1.1813	-0.00057327	-0.52175	-0.0002532	485.28051573415684	32.226	0.49538	32.226	32.059	32.555	0					27	12	4	0	0	0	0.025517	1	11782	11782		113.41	33.961	1	2568000			26087	5997	17496	17558	26437	26437					0.062190082963979876
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2815246582031	2	485.281137	968.547722	-1.2369	-0.00060025	0.99864	0.00048462	-0.23827	-0.00011563	485.28151382026874	31.964	0.26548	31.964	31.855	32.121	0					26	10	3	0	0	0	0.16002	1	10617	10617		66.429	20.477	1	514930			26088	5997	17496	17558	26438	26438					0.062190082963979876
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.28070068359375	2	485.281137	968.547722	0.65517	0.00031794	-2.4195	-0.0011741	-1.7643	-0.00085621	485.27925600716117	32.182	0.65594	32.182	32.032	32.688	0					28	15	3	0	0	0	0.021961	1	12193	12193		118.74	27.966	1	3106100			26089	5997	17496	17558	26439	26439					0.062190082963979876
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.28155517578125	2	485.281137	968.547722	-0.25116	-0.00012188	0.12357	5.9964E-05	-0.1276	-6.192E-05	485.2811499371957	31.992	0.2573	31.992	31.862	32.119	0					16	7	3	0	0	0	0.24095	1	11041	11041		56.721	14.325	1	520220			26090	5997	17496	17558	26440	26440					0.062190082963979876
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2809753417969	2	485.281137	968.547722	-2.9156	-0.0014149	2.6348	0.0012786	-0.28082	-0.00013628	485.28262732636847	31.964	0.19974	31.964	31.876	32.076	0					13	5	3	0	0	0	0.0406	1	11064	11064		98.629	24.655	1	200350			26091	5997	17496	17558	26441	26441					0.062190082963979876
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.28094482421875	2	485.281137	968.547722	-0.56801	-0.00027564	0.12177	5.9092E-05	-0.44624	-0.00021655	485.2811846454967	32.171	0.36931	32.171	31.969	32.338	0					15	7	3	0	0	0	0.034359	1	12091	12091		104.75	41.44	1	745230			26092	5997	17496	17558	26442	26442					0.062190082963979876
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.281005859375	2	485.281137	968.547722	0.84472	0.00040993	-1.91	-0.00092691	-1.0653	-0.00051699	485.2798365719029	32.162	0.6237	32.162	32	32.623	0					25	12	4	0	0	0	0.025517	1	12083	12083		113.41	22.635	1	4561100			26093	5997	17496	17558	26443	26443					0.062190082963979876
LTGPVMPVR	9	Unmodified	_LTGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2812805175781	2	485.281137	968.547722	2.4874	0.0012071	-3.7107	-0.0018007	-1.2233	-0.00059363	485.2798266193867	32.145	0.47196	32.145	32.034	32.506	0					19	9	3	0	0	0	0.021961	1	12081	12081		118.74	27.966	1	1730300			26094	5997	17496	17558	26444	26444					0.062190082963979876
LTGQAKELRG	10	Unmodified	_LTGQAKELRG_					0	0	0			REV__ENST00000468214.1_1_7:100202094-100202865:+|nuORF	REV__ENST00000468214.1_1_7:100202094-100202865:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8096923828125	2	536.809105	1071.60366	1.9544	0.0010491	-1.6511	-0.00088633	0.30325	0.00016279	536.8087840497301	28.548	0.4166	28.548	28.443	28.86	0					20	8	4	0	0	0	0.62235	1	10348	10348		31.53	3.6476	1	1350600	+		26095	13821	17497	17559	26445	26445					0.07071932737562747
LTGQYYLQ	8	Unmodified	_LTGQYYLQ_					0	0	0		ENST00000443166.5_1_7:74119516-74120740:+|nuORF	ENST00000443166.5_1_7:74119516-74120740:+|nuORF	ENST00000443166.5_1_7:74119516-74120740:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2532043457031	2	493.2531	984.491647	0.0063255	3.1201E-06	0.018093	8.9246E-06	0.024419	1.2045E-05	493.253080592599	33.105	0.30247	33.105	33.002	33.304	0					19	9	3	0	0	0	0.60719	1	11573	11573		47.916	5.4411	1	254020			26096	9594	17498	17560	26446	26446					-0.0012192133942789951
LTGRVLAL	8	Unmodified	_LTGRVLAL_					0	0	0		ENSG00000101940|ENST00000376729|WDR13;nc|ENSG00000101940|Q9H1Z4-2|WDR13	ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.77685546875	2	421.776545	841.538538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.039	1	37.039	36.539	37.539	0								0	0	0	1.7419	1	13265	13265		71.296	0	1				26097	2142	17499	17561	26447	26447					0.1114298300237806
LTGSLVLMNQ	10	Oxidation (M)	_LTGSLVLM(Oxidation (M))NQ_		LTGSLVLM(1)NQ		LTGSLVLM(77)NQ	0	0	1		ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.2936401367188	2	546.291899	1090.56925	1.7205	0.00093987	0.18966	0.00010361	1.9101	0.0010435	546.2922477183199	26.036	0.090553	26.036	25.979	26.07	0					6	3	2	0	0	0	0.21754	1	7861	7861		77.318	12.16	1	95314			26098	2701	17500	17562	26448	26448		119			0.027583485344621295
LTGSQLLRI	9	Unmodified	_LTGSQLLRI_					0	0	0		nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.2097473144531	3	334.209836	999.60768	-0.010171	-3.3994E-06	-0.089749	-2.9995E-05	-0.09992	-3.3394E-05	334.20980398819944	19.549	0.21328	19.549	19.394	19.607	0					10	4	3	0	0	0	0.55379	1	6076	6076		41.427	4.9799	1	451500			26099	7604	17501	17563	26449	26449					0.10786022231286552
LTGSVMGK	8	Unmodified	_LTGSVMGK_					0	0	0			REV__PCSK9|p.T260M|1|0.41|ENSG00000169174|chr1:55052771-55052771|C/T|missense_variant	REV__PCSK9|p.T260M|1|0.41|ENSG00000169174|chr1:55052771-55052771|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	396.718505859375	2	396.717839	791.421125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.242	1	16.242	15.742	16.742	0								0	0	0	1.7419	1	3857	3857		18.324	0	1		+		26100	21351	17502	17564	26450	26450					0.017070820712774548
LTGTARGSI	9	Unmodified	_LTGTARGSI_					0	0	0			REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF	REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2508850097656	2	438.250892	874.48723	-0.61114	-0.00026783	0.1886	8.2653E-05	-0.42254	-0.00018518	438.25097307372664	19.068	0.27646	19.068	18.928	19.205	0					13	6	3	0	0	0	0.2873	1	5093	5093		51.335	1.8939	1	1110000	+		26101	19907	17503	17565	26451	26451					0.04496614237677932
LTGWRYTM	8	Oxidation (M)	_LTGWRYTM(Oxidation (M))_		LTGWRYTM(1)		LTGWRYTM(64)	0	0	1			REV__ANO10|p.R285Gfs*49|1|0.15|ENSG00000160746|chr3:43577001-43577001|G/-|frameshift_variant	REV__ANO10|p.R285Gfs*49|1|0.15|ENSG00000160746|chr3:43577001-43577001|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2555541992188	2	522.252577	1042.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.986	1	34.986	34.486	35.486	0								0	0	0	1.7419	1	13082	13082		64.207	14.671	1		+		26102	12166	17504	17566	26452	26452		472			-0.028944589799948517
LTGYETER	8	Unmodified	_LTGYETER_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000556588.5_1_14:74427827-74429699:+|nuORF;nc|ENSG00000119723|Q9Y2Z9-2|COQ6	nc|ENSG00000119723|Q9Y2Z9-3|COQ6	nc|ENSG00000119723|Q9Y2Z9-3|COQ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.73748779296875	2	484.737814	967.461075	-2.9165	-0.0014137	2.7697	0.0013426	-0.14682	-7.1169E-05	484.739015985464	28.637	0.33086	28.637	28.506	28.836	0					16	8	3	0	0	0	0.51384	1	9519	9519		58.782	0.97068	1	264850			26103	3135	17505	17567	26453	26453					-0.023956997244795275
LTHHEMVFQG	10	Unmodified	_LTHHEMVFQG_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.19403076171875	3	400.193969	1197.56008	0.1745	6.9833E-05	-0.21038	-8.4194E-05	-0.035883	-1.436E-05	400.19391194670396	24.147	0.15949	24.147	24.047	24.206	0					8	3	3	0	0	0	0.67464	1	7474	7474		25.126	0	1	290650	+		26104	15001	17506	17568	26454	26454					-0.030800000312410702
LTHQFLVDL	9	Unmodified	_LTHQFLVDL_					0	0	0		ENST00000530758.1_1_3:10168359-10168521:+|nuORF	ENST00000530758.1_1_3:10168359-10168521:+|nuORF	ENST00000530758.1_1_3:10168359-10168521:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.5386657714844	3	362.537842	1084.5917	0.73432	0.00026622	0.25504	9.246E-05	0.98936	0.00035868	362.5380811025159	27.464	0.42446	27.464	27.251	27.676	0					17	10	2	0	0	0	0.54267	1	9611	9611		35.152	13.466	1	243680			26105	10427	17507	17569	26455	26455					0.05278315994382865
LTHRPNISI	9	Unmodified	_LTHRPNISI_					0	0	0		nc|ENSG00000105492|O43699-2|SIGLEC6;ENST00000496422.5_1_19:52032900-52035046:-|nuORF;nc|ENSG00000105492|O43699-5|SIGLEC6;nc|ENSG00000105492|O43699-6|SIGLEC6;ENST00000489837.1_1_19:52032900-52035046:-|nuORF;nc|ENSG00000105492|O43699-3|SIGLEC6;ENSG00000105492|ENST00000425629|SIGLEC6	nc|ENSG00000105492|O43699-2|SIGLEC6	nc|ENSG00000105492|O43699-2|SIGLEC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8733215332031	3	350.873336	1049.59818	-0.046036	-1.6153E-05	0.0134	4.7018E-06	-0.032636	-1.1451E-05	350.873368432093	24.139	0.26729	24.139	24.028	24.295	0					8	5	3	0	0	0	0.56424	1	8297	8297		20.03	0	1	288070			26106	2364	17508	17570	26456	26456					0.07536253945750104
LTIDYVNRR	9	Unmodified	_LTIDYVNRR_					0	0	0		LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.3204956054688	2	575.32238	1148.63021	1.0007	0.00057572	-3.4364	-0.001977	-2.4357	-0.0014013	575.3202391632565	24.656	0.25937	24.656	24.568	24.828	0					12	7	2	0	0	0	0.41958	1	7315	7315		25.574	0	1	55319			26107	6112	17509	17571	26457	26457					0.061836216289066215
LTIIKTEK	8	Unmodified	_LTIIKTEK_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;nc|ENSG00000134954|P14921-4|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.30267333984375	2	473.302593	944.590633	-0.50382	-0.00023846	0.47725	0.00022588	-0.026568	-1.2575E-05	473.302847422302	38.403	0.13137	38.403	38.36	38.491	0					10	6	2	0	0	0	0.72381	1	13743	13743		30.504	1.3541	1	100050			26108	11533	17510	17572	26458	26458					0.1161210162547377
LTIPCRAVT	9	Unmodified	_LTIPCRAVT_					0	0	0		ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2;nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2760925292969	2	487.278595	972.542637	-1.2439	-0.00060612	-1.5638	-0.00076203	-2.8077	-0.0013681	487.2779438113493	28.076	0.19528	28.076	27.96	28.155	0					12	7	2	0	0	0	0.36892	1	9001	9001		21.96	0	1	85175			26109	1593	17511	17573	26459	26459					0.0552670443378247
LTIQSGEQPYK	11	Unmodified	_LTIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	632.3330688476562	2	632.33261	1262.65067	0.19807	0.00012525	-0.37517	-0.00023723	-0.1771	-0.00011199	632.3325912603663	28.791	0.21014	28.791	28.702	28.912	0					15	7	3	0	0	0	0.029346	1	9007	9007		115.23	53.541	1	162620			26110	6105	17512	17574	26460	26460					0.029847474980442712
LTIQSGEQPYK	11	Unmodified	_LTIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	632.3320922851562	2	632.33261	1262.65067	0.88814	0.0005616	-1.4372	-0.00090877	-0.54902	-0.00034717	632.832997645789	28.795	0.15045	28.795	28.73	28.88	0					8	5	2	0	0	0	0.32196	1	9310	9310		60.167	20.914	1	84353			26111	6105	17512	17574	26461	26461					0.029847474980442712
LTIQSGEQPYK	11	Unmodified	_LTIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	632.33251953125	2	632.33261	1262.65067	-0.1885	-0.00011919	0.4123	0.00026071	0.2238	0.00014152	632.332890198207	29.045	0.25208	29.045	28.894	29.146	0					12	5	3	0	0	0	0.0012162	1	10700	10700		131.09	65.622	1	397690			26112	6105	17512	17574	26462	26462					0.029847474980442712
LTIQSGEQPYK	11	Unmodified	_LTIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	632.3323364257812	2	632.33261	1262.65067	-2.1947	-0.0013878	1.9635	0.0012416	-0.23115	-0.00014617	632.3335984363904	28.858	0.18531	28.858	28.737	28.923	0					9	4	3	0	0	0	0.018969	1	9633	9633		120.63	60.7	1	108820			26113	6105	17512	17574	26463	26463					0.029847474980442712
LTITFSVPN	9	Unmodified	_LTITFSVPN_					0	0	0		ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2743835449219	2	496.276575	990.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.055	1	22.055	21.555	22.555	0								0	0	0	0.29774	1	6177	6177		35.618	5.1146	1				26114	2946	17513	17575	26464	26464					0.04294938211717181
LTIVIERE	8	Unmodified	_LTIVIERE_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7898254394531	2	486.78985	971.565146	-0.2356	-0.00011469	-0.78372	-0.0003815	-1.0193	-0.00049619	486.78954977384967	23.674	0.2862	23.674	23.474	23.76	0					15	7	3	0	0	0	0.32597	1	7275	7275		79.713	8.4169	1	214980	+		26115	15973	17514	17576	26465	26465					0.07822627103053037
LTKALFLAL	9	Unmodified	_LTKALFLAL_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000585674.1_1_18:76966984-77037243:+|nuORF;ENST00000586366.5_1_18:76967000-77013542:+|nuORF	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.550048828125	3	330.551311	988.632104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.116	1	16.116	15.616	16.616	0								0	0	0	0.40224	1	4543	4543		10.265	0.5596	1				26116	5891	17515	17577	26466	26466					0.13733282384771428
LTKKFVHM	8	Unmodified	_LTKKFVHM_					0	0	0			REV__UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant	REV__UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2926940917969	2	502.291505	1002.56846	0.50428	0.00025329	1.5406	0.00077384	2.0449	0.0010271	502.2920143454566	21.32	0.15959	21.32	21.235	21.395	0					7	4	2	0	0	0	0.27084	1	5852	5852		92.191	15.416	1	259140	+		26117	14934	17516	17578	26467	26467					0.06727598676059188
LTKLLTSEEL	10	Unmodified	_LTKLLTSEEL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.835205078125	2	573.834454	1145.65436	1.6666	0.00095635	0.045813	2.6289E-05	1.7124	0.00098264	573.8344708083494	37.365	0.93632	37.365	37.103	38.039	0					46	19	4	0	0	0	0.59277	1	14542	14542		16.473	16.473	1	1040800			26118	4915	17517	17579	26468	26468					0.08735417271918777
LTKLMVWL	8	Unmodified	_LTKLMVWL_					0	0	0		ENST00000521903.5_1_8:124359502-124368686:-|nuORF	ENST00000521903.5_1_8:124359502-124368686:-|nuORF	ENST00000521903.5_1_8:124359502-124368686:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.3022155761719	2	502.304081	1002.59361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.062	1	24.062	23.562	24.562	0								0	0	0	1.7419	1	7444	7444		31.955	0	1				26119	10323	17518	17580	26469	26469					0.09241653478613898
LTKLVNGPK	9	Unmodified	_LTKLVNGPK_					0	0	0			REV__ENSG00000099250|ENST00000374867|NRP1	REV__ENSG00000099250|ENST00000374867|NRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.3080139160156	2	485.30821	968.601866	-1.237	-0.00060034	0.56514	0.00027427	-0.67189	-0.00032607	485.3084079518291	12.963	0.22715	12.963	12.888	13.115	0					22	11	3	0	0	0	0.48389	1	2603	2603		34.173	2.2177	1	742370	+		26120	13487	17519	17581	26470	26470					0.11630923719610564
LTKNTLIQ	8	Unmodified	_LTKNTLIQ_					0	0	0			REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2829895019531	2	465.784567	929.554582	0.67128	0.00031267	-2.8403	-0.001323	-2.169	-0.0010103	465.7840613964631	41.423	0.41582	41.423	41.197	41.613	0					26	18	2	0	0	0	0.7126	1	16249	16249		31.955	1.4512	1	115390	+		26121	20101	17520	17582	26471	26471					0.08698644448622872
LTKSFSNFY	9	Unmodified	_LTKSFSNFY_					0	0	0			REV__tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	REV__tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.7794799804688	2	553.779482	1105.54441	1.3155	0.0007285	-0.12242	-6.7795E-05	1.1931	0.00066071	553.7793491394568	42.437	0.10132	42.437	42.378	42.479	0					9	6	2	0	0	0	0.48389	1	13501	13501		34.173	2.6427	1	66891	+		26122	21671	17521	17583	26472	26472					-0.004139632766282375
LTLAVQAVSI	10	Unmodified	_LTLAVQAVSI_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.813232421875	2	507.813325	1013.6121	1.1246	0.00057109	-0.97306	-0.00049413	0.15155	7.6962E-05	507.81269155164887	32.559	0.28312	32.559	32.447	32.73	0					10	7	2	0	0	0	0.065649	1	12393	12393		104.06	5.4274	1	408020			26123	4119	17522	17584	26473	26473					0.10583486654184071
LTLCHLQF	8	Unmodified	_LTLCHLQF_					0	0	0			REV__ENST00000581193.5_1_18:3277909-3278131:+|nuORF	REV__ENST00000581193.5_1_18:3277909-3278131:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7607727050781	2	487.760038	973.505523	-0.36226	-0.00017669	1.7036	0.00083095	1.3413	0.00065426	487.76093329970433	31.772	0.17465	31.772	31.685	31.86	0					10	4	3	0	0	0	0.49216	1	11613	11613		60.972	2.19	1	193680	+		26124	20452	17523	17585	26474	26474					0.017710328880184534
LTLDHRLN	8	Unmodified	_LTLDHRLN_					0	0	0		CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant;nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;CADPS|p.R687H|1|0.3|ENSG00000163618|chr3:62536488-62536488|C/T|missense_variant;CADPS|p.R687C|1|0.2|ENSG00000163618|chr3:62536489-62536489|G/A|missense_variant;ENST00000490424.1_1_3:62521978-62535788:-|nuORF	CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2772216796875	2	491.277441	980.540328	0.58519	0.00028749	-0.23789	-0.00011687	0.3473	0.00017062	491.27746060004523	28.838	0.68632	28.838	28.565	29.251	0					29	14	4	0	0	0	0.68432	1	10637	10637		35.618	1.4457	1	909940			26125	357	17524	17586	26475	26475					0.04927992020327565
LTLIRSSGN	9	Unmodified	_LTLIRSSGN_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7769470214844	2	480.777274	959.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.751	1	12.751	12.251	13.251	0								0	0	0	0.40021	1	2749	2749		10.866	1.1599	1		+		26126	14373	17525	17587	26476	26476					0.05860572300480271
LTLISNFSKI	10	Unmodified	_LTLISNFSKI_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|62|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|62|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|62|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.341064453125	2	568.339707	1134.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.325	1	25.325	24.825	25.825	0								0	0	0	0.40634	1	7865	7865		30.318	4.7437	1				26127	11297	17526	17588	26477	26477					0.10291444716995102
LTLKGVKSGTG	11	Unmodified	_LTLKGVKSGTG_					0	0	0			REV__ENST00000594017.5_1_19:49497156-49513425:+|nuORF	REV__ENST00000594017.5_1_19:49497156-49513425:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.8237915039062	2	530.821681	1059.62881	3.4307	0.0018211	0.71162	0.00037774	4.1423	0.0021988	530.8220865283216	49.093	0.1925	49.093	49.002	49.195	0					22	11	3	0	0	0	0.44903	1	19448	19448		47.96	0.30219	1	141490	+		26128	16919	17527	17589	26478	26478					0.10137987540133508
LTLLVEER	8	Unmodified	_LTLLVEER_					0	0	0			REV__ENSG00000175535|ENST00000369221|PNLIP	REV__ENSG00000175535|ENST00000369221|PNLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.78900146484375	2	486.78985	971.565146	-0.044825	-2.182E-05	-0.014443	-7.0305E-06	-0.059268	-2.8851E-05	486.78973797241	23.625	0.31849	23.625	23.442	23.761	0					21	11	2	0	0	0	0.60719	1	6872	6872		47.916	1.9434	1	136000	+		26129	16620	17528	17590	26479	26479					0.07822627103041668
LTLNNGKL	8	Unmodified	_LTLNNGKL_					0	0	0		ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7635498046875	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.585	1	17.585	17.085	18.085	0								0	0	0	1.7419	1	4221	4221		73.975	16.163	1				26130	6689;23161	17529	17591	26480	26480					0.071820887600893
LTLNNGKL	8	Unmodified	_LTLNNGKL_					0	0	0		ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7635498046875	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.932	1	17.932	17.432	18.432	0								0	0	0	1.7419	1	5151	5151		35.618	6.4687	1				26131	6689;23161	17529	17591	26481	26481					0.071820887600893
LTLPKSAQTAK	11	Unmodified	_LTLPKSAQTAK_					0	0	0			REV__ENSG00000198842|ENST00000361200|STYXL2	REV__ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.5683288574219	3	386.567801	1156.68157	0.54922	0.00021231	0.50364	0.00019469	1.0529	0.000407	386.5679587520673	27.349	0.57615	27.349	27.187	27.763	0					24	11	3	0	0	0	0.64323	1	9767	9767		33.039	1.4051	1	596680	+		26132	17440	17530	17592	26482	26482					0.10949945602942535
LTLPPWPAL	9	Unmodified	_LTLPPWPAL_					0	0	0		ENST00000320230.9_1_11:791329-791734:-|nuORF	ENST00000320230.9_1_11:791329-791734:-|nuORF	ENST00000320230.9_1_11:791329-791734:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2982177734375	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.407	1	47.407	46.907	47.907	0								0	0	0	0.3693	1	18110	18110		12.959	0	1				26133	8610	17531	17593	26483	26483					0.08212422833662458
LTLQSNQTF	9	Unmodified	_LTLQSNQTF_					0	0	0			REV__nc|ENSG00000197050|Q8TAQ5-2|ZNF420	REV__nc|ENSG00000197050|Q8TAQ5-2|ZNF420	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2758178710938	2	526.274564	1050.53457	3.4574	0.0018195	-0.57813	-0.00030426	2.8793	0.0015153	526.2744792164544	37.954	0.15282	37.954	37.869	38.022	0					6	3	2	0	0	0	0.38666	1	14879	14879		42.864	0	1	239780	+		26134	17306	17532	17594	26484	26484					0.011328487179980584
LTLRNRSTE	9	Unmodified	_LTLRNRSTE_					0	0	0		PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3064575195312	2	545.304187	1088.59382	3.7307	0.0020343	0.98891	0.00053926	4.7196	0.0025736	545.304630954759	29.232	0.36443	29.232	29.076	29.441	0					18	7	3	0	0	0	0.30951	1	10697	10697		49.442	1.5259	1	961190			26135	3502	17533	17595	26485	26485					0.05306744732183688
LTLRTVEK	8	Unmodified	_LTLRTVEK_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2978210449219	2	480.297842	958.581131	0.050233	2.4127E-05	-0.81542	-0.00039164	-0.76518	-0.00036752	480.2974840010239	17.358	0.063141	17.358	17.323	17.386	0					4	2	2	0	0	0	0.43813	1	4130	4130		66.429	0	1	61216	+		26136	15304	17534	17596	26486	26486					0.10018333339951369
LTLSQAPI	8	Unmodified	_LTLSQAPI_					0	0	0			REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7526550292969	2	421.752736	841.490919	1.0179	0.00042931	-1.1411	-0.00048124	-0.12314	-5.1936E-05	421.7522571299935	36.08	0.42883	36.08	35.829	36.257	0					20	11	3	0	0	0	0.43813	1	13530	13530		66.429	15.094	1	215250	+		26137	13929	17535	17597	26487	26487					0.06383284011531032
LTLTGALH	8	Unmodified	_LTLTGALH_					0	0	0		nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2450256347656	2	413.245078	824.475603	0.10012	4.1375E-05	-0.23734	-9.808E-05	-0.13722	-5.6705E-05	413.2449854573392	23.534	0.3098	23.534	23.356	23.665	0					17	7	3	0	0	0	0.55361	1	7151	7151		54.765	2.4655	1	204310			26138	2867	17536	17598	26488	26488					0.056344172143212745
LTLTKTIAN	9	Unmodified	_LTLTKTIAN_					0	0	0		nc|ENSG00000180953|Q9HBF5|ST20	nc|ENSG00000180953|Q9HBF5|ST20	nc|ENSG00000180953|Q9HBF5|ST20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7971496582031	2	487.797675	973.580796	-1.2465	-0.00060802	0.54741	0.00026703	-0.69904	-0.00034099	487.7979308360839	22.172	0.13573	22.172	22.101	22.236	0					9	4	3	0	0	0	0.24334	1	6492	6492		56.434	12.057	1	192740			26139	11665	17537	17599	26489	26489					0.0929491362007866
LTLTKTIAN	9	Unmodified	_LTLTKTIAN_					0	0	0		nc|ENSG00000180953|Q9HBF5|ST20	nc|ENSG00000180953|Q9HBF5|ST20	nc|ENSG00000180953|Q9HBF5|ST20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7977294921875	2	487.797675	973.580796	-0.21819	-0.00010643	-0.079814	-3.8933E-05	-0.298	-0.00014536	487.79760738931043	22.251	0.14698	22.251	22.157	22.304	0					5	3	2	0	0	0	0.1424	1	6587	6587		69.628	12.907	1	88108			26140	11665	17537	17599	26490	26490					0.0929491362007866
LTLTWSRLV	9	Unmodified	_LTLTWSRLV_					0	0	0			REV__ENST00000262039.8_1_18:39620667-39629506:+|nuORF	REV__ENST00000262039.8_1_18:39620667-39629506:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.553466796875	3	363.553603	1087.63898	-0.089342	-3.2481E-05	-0.3598	-0.00013081	-0.44914	-0.00016329	363.55357101723956	31.926	0.11426	31.926	31.869	31.984	0					4	2	2	0	0	0	0.61124	1	12002	12002		14.137	0	1	165730	+		26141	18023	17538	17600	26491	26491					0.09866595265361866
LTLVADSHLI	10	Unmodified	_LTLVADSHLI_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.316650390625	2	541.316232	1080.61791	0.31196	0.00016887	0.14439	7.8162E-05	0.45636	0.00024703	541.3162566354122	37.478	0.5244	37.478	37.251	37.776	0					43	16	3	0	0	0	0.65213	1	14758	14758		27.882	1.1893	1	520820	+		26142	17146	17539	17601	26492	26492					0.08082585165857381
LTMGIGPW	8	Unmodified	_LTMGIGPW_					0	0	0		FKBPL|p.V148I|1|0.42|ENSG00000204315|chr6:32129339-32129339|C/T|missense_variant	FKBPL|p.V148I|1|0.42|ENSG00000204315|chr6:32129339-32129339|C/T|missense_variant	FKBPL|p.V148I|1|0.42|ENSG00000204315|chr6:32129339-32129339|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7253723144531	2	437.728206	873.44186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.697	1	21.697	21.197	22.197	0								0	0	0	1.7419	1	6271	6271		39.021	1.8624	1				26143	11139	17540	17602	26493	26493					7.672450919926632E-05
LTMGQLYEK	9	Unmodified	_LTMGQLYEK_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7816162109375	2	541.781167	1081.54778	2.0251	0.0010972	-1.6144	-0.00087466	0.4107	0.00022251	541.7804067441132	35.253	0.40753	35.253	35.136	35.544	0					16	11	2	0	0	0	0.22823	1	13660	13660		58.246	10.589	1	350710			26144	1163	17541	17603	26494	26494					0.010269635057284177
LTMKVAVNK	9	Unmodified	_LTMKVAVNK_					0	0	0		ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.203857421875	3	335.203805	1002.58959	0.372	0.0001247	-0.78928	-0.00026457	-0.41728	-0.00013987	335.2036028002506	23.989	0.10492	23.989	23.931	24.036	0					5	3	2	0	0	0	0.45358	1	7012	7012		62.107	34.225	1	111170			26145	9381	17542	17604	26495	26495					0.08839563984918186
LTMKVAVNK	9	Unmodified	_LTMKVAVNK_					0	0	0		ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.3017272949219	2	502.30207	1002.58959	0.70739	0.00035532	-1.3257	-0.0006659	-0.6183	-0.00031058	502.30138965922885	24.269	0.19778	24.269	24.174	24.372	0					6	4	2	0	0	0	0.023928	1	8155	8155		115.49	62.143	1	756510			26146	9381	17542	17604	26496	26496					0.08839563984918186
LTMKVAVNK	9	Unmodified	_LTMKVAVNK_					0	0	0		ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.2037048339844	3	335.203805	1002.58959	0.65622	0.00021997	-1.1232	-0.00037649	-0.46696	-0.00015653	335.2034649822793	24.269	0.19778	24.269	24.174	24.372	0					11	4	3	0	0	0	0.36892	1	8157	8157		68.846	31.035	1	667850			26147	9381	17542	17604	26497	26497					0.08839563984918186
LTMKVAVNK	9	Unmodified	_LTMKVAVNK_					0	0	0		ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.30169677734375	2	502.30207	1002.58959	0.051943	2.6091E-05	0.078001	3.918E-05	0.12994	6.5271E-05	502.3018055815322	24.222	0.16525	24.222	24.113	24.278	0					6	3	2	0	0	0	0.055856	1	8460	8460		93.195	41.86	1	251060			26148	9381	17542	17604	26498	26498					0.08839563984918186
LTMKVAVNK	9	Unmodified	_LTMKVAVNK_					0	0	0		ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3018493652344	2	502.30207	1002.58959	-0.52674	-0.00026458	0.075688	3.8018E-05	-0.45105	-0.00022657	502.3020896321606	24.187	0.16674	24.187	24.079	24.246	0					6	3	2	0	0	0	0.085655	1	8317	8317		82.75	18.543	1	723300			26149	9381	17542	17604	26499	26499					0.08839563984918186
LTMKVAVNK	9	Unmodified	_LTMKVAVNK_					0	0	0		ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.20379638671875	3	335.203805	1002.58959	-0.012477	-4.1824E-06	-0.41916	-0.00014051	-0.43164	-0.00014469	335.2037995172756	24.237	0.16505	24.237	24.13	24.295	0					11	3	4	0	0	0	0.54267	1	8320	8320		42.864	19.822	1	573900			26150	9381	17542	17604	26500	26500					0.08839563984918186
LTMKVAVNK	9	Unmodified	_LTMKVAVNK_					0	0	0		ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	ENST00000418474.1_1_2:160472985-160473165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.30194091796875	2	502.30207	1002.58959	1.1471	0.00057617	-1.4086	-0.00070754	-0.26153	-0.00013137	502.30144585536794	24.171	0.11607	24.171	24.113	24.229	0					6	2	3	0	0	0	0.070005	1	8312	8312		88.177	0.42264	1	585230			26151	9381	17542	17604	26501	26501					0.08839563984918186
LTMPERFNT	9	Unmodified	_LTMPERFNT_					0	0	0			REV__CACNA2D2|p.V575M|1|0.34|ENSG00000007402|chr3:50376013-50376013|C/T|missense_variant	REV__CACNA2D2|p.V575M|1|0.34|ENSG00000007402|chr3:50376013-50376013|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.776611328125	2	554.776416	1107.53828	-0.045486	-2.5235E-05	0.070665	3.9203E-05	0.025179	1.3969E-05	554.7765629097618	30.034	0.25194	30.034	29.884	30.136	0					13	5	3	0	0	0	0.50858	1	11152	11152		31.53	4.4825	1	353780	+		26152	12317	17543	17605	26502	26502					-0.011188047797986655
LTMPGGVAK	9	Unmodified	_LTMPGGVAK_					0	0	0		ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;nc|ENSG00000087266|P78314-2|SH3BP2;ENST00000511663.5_1_4:2811506-2826487:+|nuORF;ENST00000511237.5_1_4:2795936-2826487:+|nuORF;ENST00000511185.5_1_4:2814082-2826487:+|nuORF;SH3BP2|p.P238Rfs*40|1|0.37|ENSG00000087266|chr4:2829615-2829615|C/-|frameshift_variant;SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant;SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.P368Qfs*21|1|0.28|ENSG00000087266|chr4:2830004-2830004|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant	ENSG00000087266|ENST00000503393|SH3BP2	ENSG00000087266|ENST00000503393|SH3BP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.24676513671875	2	437.246763	872.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.891	1	28.891	28.391	29.391	0								0	0	0	0.10121	1	10260	10260		71.296	13.484	1				26153	1764	17544	17606	26503	26503					0.03763343996695312
LTMPGGVAK	9	Unmodified	_LTMPGGVAK_					0	0	0		ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;nc|ENSG00000087266|P78314-2|SH3BP2;ENST00000511663.5_1_4:2811506-2826487:+|nuORF;ENST00000511237.5_1_4:2795936-2826487:+|nuORF;ENST00000511185.5_1_4:2814082-2826487:+|nuORF;SH3BP2|p.P238Rfs*40|1|0.37|ENSG00000087266|chr4:2829615-2829615|C/-|frameshift_variant;SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant;SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.P368Qfs*21|1|0.28|ENSG00000087266|chr4:2830004-2830004|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant	ENSG00000087266|ENST00000503393|SH3BP2	ENSG00000087266|ENST00000503393|SH3BP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2465515136719	2	437.246763	872.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.869	1	28.869	28.369	29.369	0								0	0	0	0.21054	1	10627	10627		49.442	0.23076	1				26154	1764	17544	17606	26504	26504					0.03763343996695312
LTNDAKFKE	9	Unmodified	_LTNDAKFKE_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7835083007812	2	533.282389	1064.55022	0.14174	7.5586E-05	-1.0659	-0.00056841	-0.92414	-0.00049283	533.7831309277653	33.952	0.80418	33.952	33.768	34.573	0					35	21	3	0	0	0	0.17854	1	12597	12597		64.207	5.4253	1	478790			26155	7866	17545	17607	26505	26505					0.020531352350417365
LTNDYKVTL	9	Unmodified	_LTNDYKVTL_					0	0	0			REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7926025390625	2	533.792589	1065.57063	3.3889	0.001809	-3.356	-0.0017914	0.032918	1.7572E-05	533.7906762988611	34.758	0.30872	34.758	34.555	34.864	0					8	6	2	0	0	0	0.3269	1	13368	13368		47.96	2.9373	1	508450	+		26156	19616	17546	17608	26506	26506					0.04046305894848956
LTNELDIKEWR	11	Unmodified	_LTNELDIKEWR_					0	0	0			REV__CCDC6|p.R197W|1|0.14|ENSG00000108091|chr10:59814749-59814749|G/A|missense_variant	REV__CCDC6|p.R197W|1|0.14|ENSG00000108091|chr10:59814749-59814749|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.9206848144531	3	472.920903	1415.74088	-0.12237	-5.7873E-05	-0.43889	-0.00020756	-0.56126	-0.00026543	472.9206624123163	33.537	0.75839	33.537	33.269	34.028	0					58	18	5	0	0	0	0.79309	1	12968	12968		16.53	16.53	1	3405400	+		26157	12364	17547	17609	26507	26507					0.049637968264505616
LTNIWGAV	8	Unmodified	_LTNIWGAV_					0	0	0			REV__CNDP2|p.A143T|1|0.42|ENSG00000133313|chr18:74508899-74508899|G/A|missense_variant	REV__CNDP2|p.A143T|1|0.42|ENSG00000133313|chr18:74508899-74508899|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2467956542969	2	437.245078	872.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.754	1	28.754	28.254	29.254	0								0	0	0	1.7419	1	9586	9586		71.378	10.406	1		+		26158	12524	17548	17610	26508	26508					0.03426417214336652
LTNSVTDVGA	10	Unmodified	_LTNSVTDVGA_					0	0	0			REV__CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant	REV__CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7491760253906	2	488.750921	975.48729	0.7621	0.00037247	-3.8008	-0.0018577	-3.0387	-0.0014852	488.74896913109956	36.905	0.2201	36.905	36.824	37.044	0					8	6	2	0	0	0	0.54197	1	13964	13964		40.778	1.5253	1	116570	+		26159	12659	17549	17611	26509	26509					-0.0014343055298695617
LTPACLAPAAP	11	Unmodified	_LTPACLAPAAP_					0	0	0		ENST00000313116.11_1_X:47326904-47327099:-|nuORF	ENST00000313116.11_1_X:47326904-47327099:-|nuORF	ENST00000313116.11_1_X:47326904-47327099:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7752075195312	2	512.778428	1023.5423	0.0099446	5.0994E-06	-0.16127	-8.2695E-05	-0.15132	-7.7596E-05	512.7754306595677	24.169	0.23012	24.169	24.079	24.309	0					10	5	3	0	0	0	0.63135	1	8093	8093		34.173	0.65696	1	322730			26160	8567	17550	17612	26510	26510					0.03147284713895715
LTPAGSPPS	9	Unmodified	_LTPAGSPPS_					0	0	0			REV__ENST00000356311.9_2_9:135754299-135759312:+|nuORF	REV__ENST00000356311.9_2_9:135754299-135759312:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.7188720703125	2	413.718893	825.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.702	1	40.702	40.202	41.202	0								0	0	0	0.32356	1	16181	16181		30.504	5.0535	1		+		26161	18518	17551	17613	26511	26511					0.0035383408070401856
LTPEMLPVK	9	Unmodified	_LTPEMLPVK_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant;DOCK8|p.P952Qfs*24|1|0.35|ENSG00000107099|chr9:386404-386404|C/-|frameshift_variant;DOCK8|p.M1114Yfs*4|1|0.4|ENSG00000107099|chr9:405014-405015|-/T|frameshift_variant;ENST00000454469.6_1_9:214976-340322:+|nuORF;DOCK8|p.F547Cfs*51|1|0.09|ENSG00000107099|chr9:340281-340282|-/GTTCTAG|frameshift_variant;ENST00000495184.5_1_9:286487-368312:+|nuORF	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2984008789062	2	514.296453	1026.57835	1.4796	0.00076097	-0.19389	-9.9718E-05	1.2857	0.00066126	514.2975768444444	19.885	0.42076	19.885	19.673	20.094	0					27	8	5	0	0	0	0.11898	1	6234	6234		79.451	28.116	1	1018400			26162	2469	17552	17614	26512	26512					0.06612741890762663
LTPLARPD	8	Unmodified	_LTPLARPD_					0	0	0			REV__nc|ENSG00000105220|P06744-2|GPI	REV__nc|ENSG00000105220|P06744-2|GPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.75567626953125	2	441.75581	881.497067	0.57107	0.00025227	-1.2758	-0.00056361	-0.70477	-0.00031134	441.75532561995635	23.227	0.27538	23.227	23.093	23.369	0					15	6	4	0	0	0	0.52345	1	7669	7669		57.811	2.3071	1	540130	+	+	26163	20961	17553	17615	26513	26513					0.05157802243036258
LTPLFNPVVY	10	Unmodified	_LTPLFNPVVY_					0	0	0		ENSG00000182634|ENST00000641585|OR10G7;OR10G7|p.T288I|1|0.37|ENSG00000182634|chr11:124038139-124038139|G/A|missense_variant	ENSG00000182634|ENST00000641585|OR10G7	ENSG00000182634|ENST00000641585|OR10G7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.8273315429688	2	581.828975	1161.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.762	1	34.762	34.262	35.262	0								0	0	0	0.38797	1	12335	12335		34.173	5.023	1				26164	6910	17554	17616	26514	26514					0.0690405968828145
LTPLNMNL	8	Unmodified	_LTPLNMNL_					0	0	0			REV__ENST00000395603.7_1_X:76939207-76939318:-|nuORF	REV__ENST00000395603.7_1_X:76939207-76939318:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2501525878906	2	458.252046	914.489538	-0.6889	-0.00031569	-2.2513	-0.0010317	-2.9402	-0.0013474	458.25144038660466	35.567	0.58394	35.567	35.123	35.706	0					33	16	5	0	0	0	0.34985	1	13780	13780		76.847	1.8033	1	907240	+		26165	18881	17555	17617	26515	26515					0.028873266511141082
LTPSLDRSPPS	11	Unmodified	_LTPSLDRSPPS_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.31201171875	2	585.311677	1168.6088	-0.29336	-0.00017171	0.67051	0.00039246	0.37715	0.00022075	585.3120272839548	34.03	0.80517	34.03	33.65	34.455	0					75	33	3	0	0	0	0.68382	1	11355	11355		29.17	3.596	1	140290	+		26166	15164	17556	17618	26516	26516					0.031241918095020083
LTPTHGEM	8	Unmodified	_LTPTHGEM_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2100524902344	2	443.210378	884.406203	-2.8744	-0.001274	2.3037	0.001021	-0.57064	-0.00025291	443.2115089587308	21.666	0.12128	21.666	21.598	21.719	0					5	3	2	0	0	0	0.7126	1	6331	6331		31.955	5.2619	1	128490			26167	7709	17557	17619	26517	26517					-0.04062409796733846
LTPWKHQR	8	Unmodified	_LTPWKHQR_					0	0	0		ENST00000536997.1_1_12:68715294-68716924:-|nuORF;ENST00000538454.2_1_12:68715078-68716924:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000536997.1_1_12:68715294-68716924:-|nuORF	ENST00000536997.1_1_12:68715294-68716924:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.8692932128906	3	355.869926	1064.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.264	1	20.264	19.764	20.764	0								0	0	0	1.7419	1	6540	6540		15.642	2.1878	1				26168	2673	17558	17620	26518	26518					0.05823691011164556
LTQALLWSV	9	Unmodified	_LTQALLWSV_					0	0	0		ENST00000569193.1_1_16:46957913-46962906:+|nuORF	ENST00000569193.1_1_16:46957913-46962906:+|nuORF	ENST00000569193.1_1_16:46957913-46962906:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8005981445312	2	515.800217	1029.58588	0.032928	1.6984E-05	0.68079	0.00035115	0.71372	0.00036814	516.3017106858566	36.467	0.81412	36.467	36.161	36.975	0					35	22	2	0	0	0	0.11898	1	13788	13788		75.043	3.7476	1	1192500			26169	10779	17559	17621	26519	26519					0.07227217482704873
LTQASNLPL	9	Unmodified	_LTQASNLPL_					0	0	0			REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7734680175781	2	478.7742	955.533846	0.0096466	4.6185E-06	-0.73486	-0.00035183	-0.72522	-0.00034722	478.7736735651782	21.735	0.20664	21.735	21.542	21.749	0					9	5	3	0	0	0	0.15163	1	6348	6348		67.494	4.1874	1	54810	+		26170	16202	17560	17622	26520	26520					0.054300540689382615
LTQERSLL	8	Unmodified	_LTQERSLL_					0	0	0		ENST00000276816.8_1_8:146156998-146157223:-|nuORF	ENST00000276816.8_1_8:146156998-146157223:-|nuORF	ENST00000276816.8_1_8:146156998-146157223:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.27899169921875	2	480.279649	958.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.724	1	24.724	24.224	25.224	0								0	0	0	1.7419	1	7754	7754		35.618	0.46626	1				26171	8398	17561	17623	26521	26521					0.06381456443239131
LTQFLPGAL	9	Unmodified	_LTQFLPGAL_					0	0	0			REV__ENST00000554704.5_1_14:36176787-36221314:-|nuORF	REV__ENST00000554704.5_1_14:36176787-36221314:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2829284667969	2	480.28166	958.548768	2.3146	0.0011117	0.68389	0.00032846	2.9985	0.0014401	480.28189955542683	43.363	0.19033	43.363	43.278	43.468	0					13	7	2	0	0	0	0.2873	1	17338	17338		51.335	1.8939	1	130340	+		26172	16565	17562	17624	26522	26522					0.0678354593695758
LTQHFLIVD	9	Unmodified	_LTQHFLIVD_					0	0	0			REV__ENST00000398050.3_1_10:127355985-127356390:-|nuORF	REV__ENST00000398050.3_1_10:127355985-127356390:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.5384521484375	3	362.537842	1084.5917	-0.070473	-2.5549E-05	1.0662	0.00038655	0.99576	0.000361	362.53829747797266	27.403	0.37291	27.403	27.204	27.577	0					16	7	3	0	0	0	0.55379	1	9825	9825		27.047	3.5246	1	160610	+		26173	18921	17563	17625	26523	26523					0.052783159944056024
LTQHVRIH	8	Unmodified	_LTQHVRIH_					0	0	0		nc|ENSG00000187801|Q9UJL9-2|ZFP69B;ENSG00000187801|ENST00000361584|ZFP69B;nc|ENSG00000170100|Q96MU6-2|ZNF778;ZNF778|p.K615Nfs*80|1|0.09|ENSG00000170100|chr16:89228216-89228217|-/TATGAATGTGCTTATTC|frameshift_variant;nc|ENSG00000170100|Q96MU6|ZNF778;ENSG00000170100|ENST00000433976|ZNF778	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.19769287109375	3	335.198042	1002.5723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.952	1	17.952	17.452	18.452	0								0	0	0	1.7419	1	4386	4386		16.473	0	1				26174	6209	17564	17626	26524	26524					0.07111404494128237
LTQMVGKP	8	Unmodified	_LTQMVGKP_					0	0	0		ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant;ENSG00000175595|ENST00000311895|ERCC4	ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant	ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.25506591796875	2	437.246763	872.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.746	1	28.746	28.246	29.246	0								0	0	0	1.7419	1	10451	10451		47.916	3.3845	1				26175	6569	17565	17627	26525	26525					0.03763343996695312
LTQNEMIFK	9	Unmodified	_LTQNEMIFK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.294677734375	2	562.294442	1122.57433	1.7867	0.0010047	-1.3184	-0.00074131	0.46833	0.00026334	562.2938161167195	35.459	0.26769	35.459	35.383	35.651	0					15	7	3	0	0	0	0.0088974	1	13308	13308		143.37	33.895	1	238150			26176	5891;1274	17566	17628	26526	26526					0.017946523970749695
LTQNEMIFK	9	Unmodified	_LTQNEMIFK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B;nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2946166992188	2	562.294442	1122.57433	1.0764	0.00060525	-2.0083	-0.0011292	-0.93188	-0.00052399	562.294330007558	35.399	0.32263	35.399	35.229	35.552	0					21	6	6	0	0	0	0.011389	1	13670	13670		138.06	39.48	1	271070			26177	5891;1274	17566	17628	26527	26527					0.017946523970749695
LTQPADKIA	9	Unmodified	_LTQPADKIA_					0	0	0			REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.77294921875	2	478.7742	955.533846	-1.4424	-0.00069058	-1.3469	-0.00064486	-2.7893	-0.0013354	478.7733221204481	21.661	0.13218	21.661	21.546	21.678	0					6	4	2	0	0	0	0.21263	1	6254	6254		60.118	3.3972	1	86160	+		26178	21811	17567	17629	26528	26528					0.05430054068926893
LTQPHHCL	8	Carbamidomethyl (C)	_LTQPHHC(Carbamidomethyl (C))L_	LTQPHHC(1)L		LTQPHHC(55)L		0	1	0			REV__ENST00000452765.6_1_4:2822364-2824713:+|nuORF	REV__ENST00000452765.6_1_4:2822364-2824713:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.25360107421875	2	503.250369	1004.48618	2.9287	0.0014739	4.1121	0.0020694	7.0409	0.0035433	503.25208774582546	32.295	0.51996	32.295	32.186	32.706	0					22	10	3	0	0	0	0.55361	1	12172	12172		54.765	7.1073	1	740810	+		26179	19323	17568	17630	26529	26529	691				-0.01587923402883007
LTQQEKKCL	9	Unmodified	_LTQQEKKCL_					0	0	0		ENST00000447944.6_1_2:55906852-55906897:-|nuORF	ENST00000447944.6_1_2:55906852-55906897:-|nuORF	ENST00000447944.6_1_2:55906852-55906897:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3018188476562	2	545.799891	1089.58523	-1.4991	-0.00081823	1.9863	0.0010841	0.48718	0.0002659	546.3027277137877	15.901	0.11009	15.901	15.831	15.941	0					6	4	2	0	0	0	0.12834	1	3655	3655		66.429	0	1	78896			26180	9630	17569	17631	26530	26530					0.0440205477134441
LTQQLEPK	8	Unmodified	_LTQQLEPK_					0	0	0			REV__ENST00000273261.7_1_3:66512909-66550892:-|nuORF	REV__ENST00000273261.7_1_3:66512909-66550892:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7736511230469	2	478.7742	955.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.954	1	21.954	21.454	22.454	0								0	0	0	1.7419	1	7058	7058		79.713	1.4488	1		+		26181	18108	17570	17632	26531	26531					0.054300540689382615
LTQVRESRV	9	Unmodified	_LTQVRESRV_					0	0	0		ENST00000608756.5_1_3:122145799-122145940:+|nuORF	ENST00000608756.5_1_3:122145799-122145940:+|nuORF	ENST00000608756.5_1_3:122145799-122145940:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.3159790039062	2	544.314554	1086.61456	0.44057	0.00023981	1.8857	0.0010264	2.3263	0.0012662	544.3159431006254	13.197	0.10933	13.197	13.148	13.258	0					7	5	2	0	0	0	0.42902	1	2696	2696		39.253	0	1	45011			26182	11099	17571	17633	26532	26532					0.07471335111858934
LTQVSAPAL	9	Unmodified	_LTQVSAPAL_					0	0	0			REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant;REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2635192871094	2	450.263468	898.512382	0.17759	7.9963E-05	-0.1694	-7.6274E-05	0.0081935	3.6892E-06	450.2632816822898	31.802	0.33664	31.802	31.668	32.005	0					16	8	3	0	0	0	0.16806	1	11584	11584		65.465	3.358	1	531430	+		26183	13295;21602	17572	17634	26533	26533					0.05906669040234647
LTRCMFAY	8	Unmodified	_LTRCMFAY_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7374572753906	2	502.738248	1003.46194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.099	1	37.099	36.599	37.599	0								0	0	0	1.7419	1	14040	14040		26.796	2.2769	1				26184	4390	17573	17635	26534	26534					-0.039648998807820135
LTRDADRSKRK	11	Unmodified	_LTRDADRSKRK_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.26104736328125	3	449.260141	1344.75859	0.8745	0.00039288	1.0901	0.00048974	1.9646	0.00088262	449.2606578194977	17.691	0.26844	17.691	17.615	17.883	0					9	5	2	0	0	0	0.70921	1	5154	5154		26.75	4.1881	1	801690	+		26185	14073	17574	17636	26535	26535					0.10000556871955268
LTRDKTVVSA	10	Unmodified	_LTRDKTVVSA_					0	0	0		ENST00000483704.5_1_17:17207728-17250258:+|nuORF;ENSG00000205309|ENST00000389022|NT5M	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3173217773438	2	545.316763	1088.61897	2.4412	0.0013312	-1.5955	-0.00087007	0.84564	0.00046114	545.3159402185169	49.927	0.53744	49.927	49.686	50.224	0					45	33	2	0	0	0	0.68774	1	15629	15629		23.523	2.5758	1	51947			26186	7744	17575	17637	26536	26536					0.07820799534783873
LTRDSTLPQ	9	Unmodified	_LTRDSTLPQ_					0	0	0		ENST00000505295.1_1_5:80540896-80542784:-|nuORF	ENST00000505295.1_1_5:80540896-80542784:-|nuORF	ENST00000505295.1_1_5:80540896-80542784:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7796020507812	2	515.780013	1029.54547	0.21492	0.00011085	-0.17912	-9.2387E-05	0.035799	1.8464E-05	515.7797475144531	28.252	0.12983	28.252	28.144	28.273	0					8	4	2	0	0	0	0.22377	1	8793	8793		58.782	2.0609	1	78537			26187	10181	17576	17638	26537	26537					0.03188251092274186
LTREELLKK	9	Unmodified	_LTREELLKK_					0	0	0			REV__ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	REV__ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.236083984375	3	377.236163	1128.68666	0.6979	0.00026327	-0.7808	-0.00029455	-0.082901	-3.1273E-05	377.2358590933322	16.089	0.41947	16.089	15.88	16.3	0					14	8	3	0	0	0	0.40353	1	4398	4398		41.427	1.3684	1	472940	+		26188	14738	17577	17639	26538	26538					0.12746249465567416
LTRGRMPLSS	10	Unmodified	_LTRGRMPLSS_					0	0	0			REV__FHDC1|p.R151M|1|0.43|ENSG00000137460|chr4:152943509-152943509|G/T|missense_variant	REV__FHDC1|p.R151M|1|0.43|ENSG00000137460|chr4:152943509-152943509|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.2098693847656	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.157	1	27.157	26.657	27.657	0								0	0	0	0.4201	1	8623	8623		20.837	0	1		+		26189	20673	17578	17640	26539	26539					0.05372279239782074
LTRPLCGPL	9	Unmodified	_LTRPLCGPL_					0	0	0			REV__ENSG00000125872|ENST00000378858|LRRN4	REV__ENSG00000125872|ENST00000378858|LRRN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2809753417969	2	485.281137	968.547722	-0.012982	-6.2998E-06	-0.18706	-9.0778E-05	-0.20004	-9.7078E-05	485.2811414882896	31.957	0.28604	31.957	31.794	32.08	0					24	11	3	0	0	0	0.2873	1	10262	10262		51.335	10.557	1	322350	+		26190	14445	17579	17641	26540	26540					0.062190082963979876
LTRRARVY	8	Unmodified	_LTRRARVY_					0	0	0		ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B	ENSG00000165914|ENST00000328459|TTC7B	ENSG00000165914|ENST00000328459|TTC7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.8161010742188	2	517.814525	1033.6145	3.3321	0.0017254	-0.082026	-4.2474E-05	3.2501	0.001683	517.8145107161005	39.058	0.15655	39.058	38.953	39.11	0					5	3	2	0	0	0	0.67394	1	15418	15418		37.159	1.5408	1	121500			26191	5840	17580	17642	26541	26541					0.09903379902516463
LTRSTITTV	9	Unmodified	_LTRSTITTV_					0	0	0			REV__ENST00000519610.1_1_5:150534726-150534804:-|nuORF	REV__ENST00000519610.1_1_5:150534726-150534804:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2923278808594	2	496.292756	990.57096	-2.3728	-0.0011776	1.733	0.00086009	-0.63972	-0.00031749	496.2935478981485	15.26	0.065265	15.26	15.2	15.265	0					4	2	2	0	0	0	0.24095	1	3376	3376		56.721	1.9447	1	191520	+		26192	19940	17581	17643	26542	26542					0.075297256146996
LTRTSLPQL	9	Unmodified	_LTRTSLPQL_					0	0	0		ENSG00000170396|ENST00000302277|ZNF804A	ENSG00000170396|ENST00000302277|ZNF804A	ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.80859375	2	514.808574	1027.60259	1.1726	0.00060367	-1.1373	-0.0005855	0.035295	1.817E-05	514.8080777910284	26.539	0.23246	26.539	26.453	26.685	0					10	5	3	0	0	0	0.37744	1	9179	9179		29.17	0	1	1127300			26193	6233	17582	17644	26543	26543					0.0898971836866167
LTSAAGGLLL	10	Unmodified	_LTSAAGGLLL_					0	0	0			REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2792663574219	2	458.279118	914.543683	0.12903	5.9133E-05	-0.31564	-0.00014465	-0.1866	-8.5517E-05	458.27935485001603	34.96	0.10688	34.96	34.89	34.997	0					5	3	2	0	0	0	0.52707	1	12425	12425		42.396	1.618	1	36914	+		26194	13754	17583	17645	26544	26544					0.08299242074338053
LTSDELHL	8	Unmodified	_LTSDELHL_					0	0	0		nc|ENSG00000175048|Q8IZN3-2|ZDHHC14;ENSG00000175048|ENST00000359775|ZDHHC14	nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2424011230469	2	464.242732	926.470912	-0.48245	-0.00022398	-0.74548	-0.00034609	-1.2279	-0.00057006	464.242308668259	20.9	0.16629	20.9	20.793	20.96	0					6	3	2	0	0	0	0.64096	1	6728	6728		42.474	0	1	351490			26195	6528	17584	17646	26545	26545					0.004734882809088958
LTSDNKVIE	9	Unmodified	_LTSDNKVIE_					0	0	0		LRPPRC|p.E1207D|1|0.04|ENSG00000138095|chr2:43899554-43899554|C/A|missense_variant	LRPPRC|p.E1207D|1|0.04|ENSG00000138095|chr2:43899554-43899554|C/A|missense_variant	LRPPRC|p.E1207D|1|0.04|ENSG00000138095|chr2:43899554-43899554|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7746887207031	2	509.774396	1017.53424	0.66996	0.00034153	0.15506	7.9047E-05	0.82502	0.00042057	509.77438801434675	19.514	0.14253	19.514	19.42	19.562	0					5	3	2	0	0	0	0.098791	1	5323	5323		79.713	0	1	202170			26196	11326	17585	17647	26546	26546					0.02617428998144078
LTSFDIHILRA	11	Unmodified	_LTSFDIHILRA_					0	0	0		nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4;nc|ENSG00000187243|Q96JG8-3|MAGED4;ENST00000470594.5_1_X:51809762-51812242:-|nuORF	nc|ENSG00000187243|Q96JG8-2|MAGED4	nc|ENSG00000187243|Q96JG8-2|MAGED4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2478942871094	3	429.24695	1284.71902	1.0238	0.00043948	1.1341	0.00048679	2.1579	0.00092627	429.24747434573806	33.667	0.16666	33.667	33.533	33.7	0					11	3	4	0	0	0	0.65907	1	12821	12821		34.087	12.306	1	649240			26197	5090	17586	17648	26547	26547					0.08805036868579919
LTSGIFETK	9	Unmodified	_LTSGIFETK_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;GNAS|p.R201C|2|0.33|ENSG00000087460|chr20:58909365-58909365|C/T|missense_variant	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2741394042969	2	498.274032	994.533512	-1.108	-0.00055207	0.44741	0.00022293	-0.66056	-0.00032914	498.2741248641883	33.185	0.17648	33.185	33.117	33.294	0					11	7	2	0	0	0	0.25716	1	11126	11126		54.776	13.998	1	94248			26198	1768	17587	17649	26548	26548					0.03602634349101663
LTSGIFETK	9	Unmodified	_LTSGIFETK_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;GNAS|p.R201C|2|0.33|ENSG00000087460|chr20:58909365-58909365|C/T|missense_variant	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2738342285156	2	498.274032	994.533512	0.82021	0.00040869	-0.87822	-0.00043759	-0.058005	-2.8902E-05	498.2735473204765	33.392	0.27237	33.392	33.259	33.532	0					13	6	3	0	0	0	0.13726	1	12788	12788		70.816	9.8443	1	629680			26199	1768	17587	17649	26549	26549					0.03602634349101663
LTSGIFETK	9	Unmodified	_LTSGIFETK_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;GNAS|p.R201C|2|0.33|ENSG00000087460|chr20:58909365-58909365|C/T|missense_variant	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.273681640625	2	498.274032	994.533512	1.025	0.00051074	-1.3779	-0.00068659	-0.35292	-0.00017585	498.2733272219835	33.339	0.31758	33.339	33.232	33.549	0					9	6	2	0	0	0	0.047855	1	12676	12676		96.034	37.252	1	560650			26200	1768	17587	17649	26550	26550					0.03602634349101663
LTSHITVY	8	Unmodified	_LTSHITVY_					0	0	0		tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2540283203125	2	467.255643	932.496732	-0.50519	-0.00023605	-2.415	-0.0011284	-2.9202	-0.0013645	467.25439111277893	40.316	0.14729	40.316	40.229	40.376	0					5	3	2	0	0	0	0.75243	1	16011	16011		26.796	1.3459	1	60050			26201	22656	17588	17650	26551	26551					0.027783825231722403
LTSHSDSN	8	Unmodified	_LTSHSDSN_					0	0	0			REV__ENST00000434391.6_1_1:26796443-26796557:+|nuORF	REV__ENST00000434391.6_1_1:26796443-26796557:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.6896667480469	2	430.690864	859.367175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.565	1	41.565	41.065	42.065	0								0	0	0	1.7419	1	15793	15793		31.53	0	1		+		26202	19192	17589	17651	26552	26552					-0.06813418826754969
LTSHSQVVTAL	11	Unmodified	_LTSHSQVVTAL_					0	0	0		ENST00000564176.5_1_16:31487200-31487686:+|nuORF	ENST00000564176.5_1_16:31487200-31487686:+|nuORF	ENST00000564176.5_1_16:31487200-31487686:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.8851318359375	3	385.883789	1154.62954	3.2148	0.0012405	0.18713	7.2212E-05	3.4019	0.0013127	385.88384893604353	28.733	0.46878	28.733	28.574	29.043	0					23	9	4	0	0	0	0.59078	1	10434	10434		37.6	4.5605	1	2550500			26203	10739	17590	17652	26553	26553					0.05840782189216043
LTSKEGPKL	9	Unmodified	_LTSKEGPKL_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.79083251953125	2	486.78985	971.565146	-0.23514	-0.00011447	-0.60808	-0.00029601	-0.84322	-0.00041047	486.7899131131616	37.287	0.28424	37.287	37.131	37.415	0					32	14	3	0	0	0	0.19605	1	13328	13328		62.107	1.9892	1	547860	+		26204	14775	17591	17653	26554	26554					0.07822627103041668
LTSKLHPNP	9	Unmodified	_LTSKLHPNP_					0	0	0			REV__ENSG00000135447|ENST00000257905|PPP1R1A	REV__ENSG00000135447|ENST00000257905|PPP1R1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.1941223144531	3	336.194186	1005.56073	0.53513	0.00017991	-0.45518	-0.00015303	0.079948	2.6878E-05	336.1940621588383	17.6	2.3875	17.6	17.421	19.809	0					108	48	4	0	0	0	0.43426	1	5231	5231		37.812	0	1	890750	+		26205	14801	17592	17654	26555	26555					0.05817162680136789
LTSKLHSSL	9	Unmodified	_LTSKLHSSL_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.28643798828125	2	493.287474	984.560395	-0.070305	-3.4681E-05	-0.29637	-0.00014619	-0.36667	-0.00018088	493.28732210205413	32.45	0.24173	32.45	32.339	32.581	0					18	10	3	0	0	0	0.56424	1	10477	10477		25.574	4.6271	1	124590			26206	1636	17593	17655	26556	26556					0.06749742960300864
LTSLFLGGAAL	11	Unmodified	_LTSLFLGGAAL_					0	0	0			REV__NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant	REV__NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.8118286132812	2	531.813325	1061.6121	-1.2522	-0.00066594	-0.75227	-0.00040006	-2.0045	-0.001066	531.8122134995945	35.708	0.14648	35.708	35.661	35.808	0					7	5	2	0	0	0	0.50161	1	12729	12729		44.117	1.7207	1	63725	+		26207	16791	17594	17656	26557	26557					0.08375486654176711
LTSLLAMTR	9	Unmodified	_LTSLLAMTR_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2915344238281	2	503.291702	1004.56885	1.1737	0.00059073	-1.508	-0.00075898	-0.3343	-0.00016825	503.2910631085154	37.26	0.26328	37.26	37.154	37.417	0					9	5	2	0	0	0	0.16002	1	14564	14564		66.429	2.222	1	632310			26208	11797	17595	17657	26558	26558					0.0667497360524294
LTSLYVFY	8	Unmodified	_LTSLYVFY_					0	0	0		HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant;ENSG00000153976|ENST00000284110|HS3ST3A1	HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant	HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.26678466796875	2	503.268219	1004.52188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.262	1	34.262	33.762	34.762	0								0	0	0	1.7419	1	13192	13192		37.028	1.4102	1				26209	5067	17596	17658	26559	26559					0.019804373257670704
LTSNAIQL	8	Unmodified	_LTSNAIQL_					0	0	0		ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.2475891113281	2	430.247818	858.481082	-0.44886	-0.00019312	0.028575	1.2294E-05	-0.42029	-0.00018083	430.2478832978193	24.731	0.60215	24.731	24.628	25.23	0					15	12	2	0	0	0	0.35045	1	8577	8577		76.774	0	1	1084500			26210	10279	17597	17659	26560	26560					0.04618096006140604
LTSNFAKSV	9	Unmodified	_LTSNFAKSV_					0	0	0		ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant;nc|ENSG00000073670|O75078-2|ADAM11;ADAM11|p.D614Tfs*33|1|0.15|ENSG00000073670|chr17:44777537-44777537|G/-|frameshift_variant;ENSG00000073670|ENST00000200557|ADAM11	ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7660827636719	2	483.766374	965.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.773	1	35.773	35.273	36.273	0								0	0	0	0.22284	1	13441	13441		47.657	1.7054	1				26211	48	17598	17660	26561	26561					0.03405767551907957
LTSPICAHA	9	Unmodified	_LTSPICAHA_					0	0	0			REV__ENST00000442007.1_1_6:73985509-73985899:+|nuORF	REV__ENST00000442007.1_1_6:73985509-73985899:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7346496582031	2	456.73402	911.453487	-0.43209	-0.00019735	-0.024419	-1.1153E-05	-0.45651	-0.0002085	456.7340187063765	37.064	0.84898	37.064	36.778	37.627	0					30	17	2	0	0	0	0.49003	1	14671	14671		33.516	0	1	238610	+		26212	19245	17599	17661	26562	26562					-0.005781305257642089
LTSSAPKT	8	Unmodified	_LTSSAPKT_					0	0	0		ENST00000550488.5_1_12:50044549-50044988:-|nuORF	ENST00000550488.5_1_12:50044549-50044988:-|nuORF	ENST00000550488.5_1_12:50044549-50044988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.7262268066406	2	402.726718	803.438883	0.60805	0.00024488	-1.0941	-0.00044063	-0.48608	-0.00019576	402.72622566264346	19.034	0.16657	19.034	18.939	19.106	0					9	5	2	0	0	0	0.51384	1	4843	4843		58.782	0	1	94705			26213	10618	17600	17662	26563	26563					0.02930120597761743
LTSSRGFVGT	10	Unmodified	_LTSSRGFVGT_					0	0	0			REV__RNF133|p.F278Sfs*43|1|0.17|ENSG00000188050|chr7:122698086-122698086|A/-|frameshift_variant	REV__RNF133|p.F278Sfs*43|1|0.17|ENSG00000188050|chr7:122698086-122698086|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7744140625	2	512.774731	1023.53491	-0.28479	-0.00014603	-0.50802	-0.0002605	-0.7928	-0.00040653	512.7747330999092	23.897	0.13964	23.897	23.827	23.967	0					9	5	2	0	0	0	0.46989	1	7230	7230		36.447	3.6343	1	69497	+		26214	17152	17601	17663	26564	26564					0.024082684378640806
LTSSRRPR	8	Unmodified	_LTSSRRPR_					0	0	0			REV__nc|ENSG00000120949|P28908-3|TNFRSF8	REV__nc|ENSG00000120949|P28908-3|TNFRSF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.78961181640625	2	486.788507	971.562461	2.5388	0.0012358	-0.36677	-0.00017854	2.172	0.0010573	486.78833956426445	23.854	0.31109	23.854	23.552	23.863	0					17	6	4	0	0	0	0.3961	1	8139	8139		71.296	71.296	1	648770	+		26215	20997	17602	17664	26565	26565					0.07554216488756538
LTSSSALKK	9	Unmodified	_LTSSSALKK_					0	0	0			REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7818603515625	2	467.782025	933.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.856	1	17.856	17.356	18.356	0								0	0	0	0.29774	1	4342	4342		35.618	3.6634	1		+		26216	21373	17603	17665	26566	26566					0.08006340586007354
LTTAVITNK	9	Unmodified	_LTTAVITNK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7895812988281	2	480.78985	959.565146	0.075379	3.6242E-05	-1.1118	-0.00053456	-1.0365	-0.00049832	480.78907533265567	25.945	0.19048	25.945	25.815	26.006	0					7	4	2	0	0	0	0.24334	1	7830	7830		56.434	18.622	1	150210			26217	2284	17604	17666	26567	26567					0.0837462710304635
LTTAVITNK	9	Unmodified	_LTTAVITNK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.78912353515625	2	480.78985	959.565146	-0.16067	-7.7248E-05	-0.98978	-0.00047588	-1.1504	-0.00055312	480.7894516457728	26.417	0.46857	26.417	26.112	26.581	0					19	11	3	0	0	0	0.21419	1	9036	9036		59.931	22.119	1	726370			26218	2284	17604	17666	26568	26568					0.0837462710304635
LTTAVITNK	9	Unmodified	_LTTAVITNK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7893371582031	2	480.78985	959.565146	-0.51627	-0.00024822	-0.29895	-0.00014373	-0.81522	-0.00039195	480.78953489180765	26.452	0.51023	26.452	26.101	26.611	0					15	10	3	0	0	0	0.063171	1	9361	9361		90.601	26.394	1	745540			26219	2284	17604	17666	26569	26569					0.0837462710304635
LTTEVHPEL	9	Unmodified	_LTTEVHPEL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7775268554688	2	519.776939	1037.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.482	1	33.482	32.982	33.982	0								0	0	0	0.19749	1	11236	11236		51.335	10.557	1				26220	3455	17605	17667	26570	26570					0.022057328607616
LTTEVHPEL	9	Unmodified	_LTTEVHPEL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.77783203125	2	519.776939	1037.53933	1.118	0.00058112	-0.31332	-0.00016286	0.8047	0.00041827	519.7769126511131	33.659	0.31912	33.659	33.532	33.851	0					17	8	3	0	0	0	0.24095	1	12877	12877		56.721	15.943	1	289800			26221	3455	17605	17667	26571	26571					0.022057328607616
LTTEVHPEL	9	Unmodified	_LTTEVHPEL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7770385742188	2	519.776939	1037.53933	1.3541	0.00070385	-0.55502	-0.00028848	0.79912	0.00041536	519.7765350615437	33.449	0.19976	33.449	33.361	33.56	0					8	5	2	0	0	0	0.14603	1	11740	11740		68.787	15.435	1	89093			26222	3455	17605	17667	26572	26572					0.022057328607616
LTTEVHPEL	9	Unmodified	_LTTEVHPEL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7770385742188	2	519.776939	1037.53933	0.31226	0.0001623	-0.056286	-2.9256E-05	0.25597	0.00013305	519.776897669652	33.608	0.47689	33.608	33.348	33.825	0					20	10	3	0	0	0	0.023074	1	12802	12802		116.9	34.599	1	1368100			26223	3455	17605	17667	26573	26573					0.022057328607616
LTTGSSHQL	9	Unmodified	_LTTGSSHQL_					0	0	0			REV__CDH12|p.T191Dfs*22|1|0.31|ENSG00000154162|chr5:21854747-21854748|-/G|frameshift_variant	REV__CDH12|p.T191Dfs*22|1|0.31|ENSG00000154162|chr5:21854747-21854748|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.24560546875	2	472.245806	942.47706	-0.36838	-0.00017396	-0.11457	-5.4106E-05	-0.48295	-0.00022807	472.2457468144014	23.707	0.26571	23.707	23.561	23.827	0					14	9	2	0	0	0	0.26904	1	6863	6863		53.351	14.099	1	147350	+		26224	12394	17606	17668	26574	26574					0.003520065124348548
LTTKATLVLN	10	Unmodified	_LTTKATLVLN_					0	0	0		nc|ENSG00000130021|Q08623-2|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	nc|ENSG00000130021|Q08623-2|PUDP	nc|ENSG00000130021|Q08623-2|PUDP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3318481445312	2	537.331882	1072.64921	0.74903	0.00040248	0.18148	9.7516E-05	0.93051	0.00049999	537.3317103713696	22.396	0.22476	22.396	22.307	22.532	0					12	6	3	0	0	0	0.536	1	6330	6330		41.427	1.3684	1	195410			26225	3615	17607	17669	26575	26575					0.11579158199947415
LTTLGAPRA	9	Unmodified	_LTTLGAPRA_					0	0	0		ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENST00000268795.5_1_16:68025981-68027124:-|nuORF	ENSG00000167261|ENST00000393847|DPEP2	ENSG00000167261|ENST00000393847|DPEP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2691345214844	2	450.269084	898.523616	0.87577	0.00039433	-4.1794	-0.0018819	-3.3036	-0.0014875	450.2665812219636	28.068	0.97329	28.068	27.238	28.211	0					23	19	2	0	0	0	0.41113	1	10156	10156		40.778	0	1	279390			26226	5981	17608	17670	26576	26576					0.07029491134369437
LTTLSHPG	8	Unmodified	_LTTLSHPG_					0	0	0			REV__ENST00000555647.5_3_14:75388227-75389943:-|nuORF	REV__ENST00000555647.5_3_14:75388227-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.2266540527344	2	413.226885	824.439217	0.61034	0.00025221	-0.23097	-9.5444E-05	0.37937	0.00015676	413.226667510498	23.627	0.18328	23.627	23.546	23.729	0					11	6	3	0	0	0	0.61433	1	6858	6858		46.766	2.2354	1	146080	+		26227	20245	17609	17671	26577	26577					0.019975403176204054
LTTNSFLH	8	Unmodified	_LTTNSFLH_					0	0	0			REV__ENST00000470045.1_1_10:22605346-22607030:+|nuORF	REV__ENST00000470045.1_1_10:22605346-22607030:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7454833984375	2	466.745442	931.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.145	1	43.145	42.645	43.645	0								0	0	0	1.7419	1	16304	16304		55.504	7.5886	1		+		26228	19462	17610	17672	26578	26578					0.00785211863387758
LTTNTLIT	8	Unmodified	_LTTNTLIT_					0	0	0			REV__ENST00000400227.7_1_20:469349-469382:-|nuORF	REV__ENST00000400227.7_1_20:469349-469382:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7554016113281	2	438.755475	875.496398	0.58906	0.00025845	-1.0908	-0.00047861	-0.50177	-0.00022015	438.75464350505393	35.867	0.35514	35.867	35.751	36.106	0					11	9	2	0	0	0	0.35045	1	13497	13497		76.774	5.4784	1	98349	+		26229	18943	17611	17673	26579	26579					0.05366962803338993
LTTQDSQIV	9	Unmodified	_LTTQDSQIV_					0	0	0		nc|ENSG00000255221|Q5XLA6|CARD17P	nc|ENSG00000255221|Q5XLA6|CARD17P	nc|ENSG00000255221|Q5XLA6|CARD17P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7668762207031	2	502.766571	1003.51859	0.98627	0.00049586	-0.033903	-1.7045E-05	0.95236	0.00047882	502.7662964236561	37.053	0.34078	37.053	36.93	37.271	0					17	10	2	0	0	0	0.025517	1	14452	14452		113.41	11.811	1	511920			26230	11793	17612	17674	26580	26580					0.016971424811117686
LTTRDIVKCGT	11	Unmodified	_LTTRDIVKCGT_					0	0	0			REV__tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	REV__tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.8897705078125	3	402.888546	1205.64381	3.1395	0.0012649	-0.33408	-0.0001346	2.8054	0.0011303	402.88850026338747	22.663	0.91412	22.663	22.304	23.218	0					49	18	5	0	0	0	0.65378	1	7582	7582		32.034	1.4653	1	4782000	+		26231	21727	17613	17675	26581	26581					0.04921111345811369
LTTRSPWL	8	Unmodified	_LTTRSPWL_					0	0	0			REV__ENST00000482508.5_1_21:48063432-48064227:+|nuORF	REV__ENST00000482508.5_1_21:48063432-48064227:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.27685546875	2	487.276909	972.539266	2.5502	0.0012427	-1.9143	-0.00093281	0.63589	0.00030985	487.27611710760453	28.237	0.31729	28.237	28.126	28.443	0					11	6	2	0	0	0	0.51384	1	10216	10216		38.806	0	1	1542100	+		26232	18510	17614	17676	26582	26582					0.0518977765142381
LTTSHENI	8	Unmodified	_LTTSHENI_					0	0	0		ENST00000521704.1_1_8:124792721-124796858:+|nuORF	ENST00000521704.1_1_8:124792721-124796858:+|nuORF	ENST00000521704.1_1_8:124792721-124796858:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7320861816406	2	457.732532	913.45051	-1.0092	-0.00046193	0.43369	0.00019851	-0.57549	-0.00026342	457.73268120749844	22.361	0.27831	22.361	22.2	22.479	0					11	8	2	0	0	0	0.46905	1	6562	6562		63.306	0.32785	1	96817			26233	10319	17615	17677	26583	26583					-0.009676823788936417
LTTTSRAEF	9	Unmodified	_LTTTSRAEF_					0	0	0		nc|ENSG00000156531|Q8IWS0-2|PHF6;nc|ENSG00000156531|Q8IWS0-5|PHF6;ENSG00000156531|ENST00000370803|PHF6;nc|ENSG00000156531|Q8IWS0-4|PHF6;nc|ENSG00000156531|Q8IWS0-3|PHF6	nc|ENSG00000156531|Q8IWS0-2|PHF6	nc|ENSG00000156531|Q8IWS0-2|PHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2667846679688	2	513.266739	1024.51892	-0.25703	-0.00013192	0.1545	7.9298E-05	-0.10253	-5.2627E-05	513.2665784581185	26.414	0.15606	26.414	26.313	26.469	0					7	5	2	0	0	0	0.42902	1	8313	8313		39.253	9.4113	1	55301			26234	5180	17616	17678	26584	26584					0.007645622009476938
LTTYGLGAL	9	Unmodified	_LTTYGLGAL_					0	0	0			REV__TSKU|p.P81L|1|0.06|ENSG00000182704|chr11:76795858-76795858|C/T|missense_variant	REV__TSKU|p.P81L|1|0.06|ENSG00000182704|chr11:76795858-76795858|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.75836181640625	2	454.758018	907.501483	0.71876	0.00032686	-1.2237	-0.00055648	-0.50493	-0.00022962	454.7572661685742	38.478	0.13643	38.478	38.429	38.565	0					7	4	2	0	0	0	0.21116	1	14628	14628		60.294	8.9585	1	48570	+		26235	22241	17617	17679	26585	26585					0.044032666659632014
LTVDARPC	8	Unmodified	_LTVDARPC_					0	0	0			REV__nc|ENSG00000130182|Q96SZ4|ZSCAN10	REV__nc|ENSG00000130182|Q96SZ4|ZSCAN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7261657714844	2	437.726195	873.437837	0.61253	0.00026812	-1.1887	-0.00052031	-0.57614	-0.00025219	437.72576108541534	21.993	0.39455	21.993	21.738	22.132	0					23	9	3	0	0	0	0.60719	1	7086	7086		47.916	0	1	574900	+		26236	14567	17618	17680	26586	26586					-0.0039441704279852274
LTVEREPQA	9	Unmodified	_LTVEREPQA_					0	0	0			REV__ENST00000395340.5_1_20:61521863-61522052:-|nuORF	REV__ENST00000395340.5_1_20:61521863-61522052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7803955078125	2	521.780013	1041.54547	0.37033	0.00019323	0.16725	8.727E-05	0.53759	0.0002805	521.7802115167831	28.981	0.38089	28.981	28.88	29.261	0					35	15	3	0	0	0	0.1115	1	9392	9392		76.774	5.9579	1	378150	+		26237	18875	17619	17681	26587	26587					0.026362510922808724
LTVHIEQAN	9	Unmodified	_LTVHIEQAN_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7747192382812	2	512.774731	1023.53491	1.2668	0.00064959	-1.8622	-0.00095487	-0.59536	-0.00030528	512.7738822279844	24.104	0.21852	24.104	23.995	24.213	0					7	4	2	0	0	0	0.30841	1	8408	8408		26.693	0	1	623290			26238	1705	17620	17682	26588	26588					0.02408268437852712
LTVHLDGRRS	10	Unmodified	_LTVHLDGRRS_					0	0	0			REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.322998046875	2	577.325454	1152.63635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.45	1	18.45	17.95	18.95	0								0	0	0	0.4201	1	4820	4820		19.104	2.6304	1		+		26239	16611	17621	17683	26589	26589					0.06614139860425894
LTVKEESL	8	Unmodified	_LTVKEESL_					0	0	0			REV__CCDC40|p.A894V|1|0.24|ENSG00000141519|chr17:80088072-80088072|C/T|missense_variant	REV__CCDC40|p.A894V|1|0.24|ENSG00000141519|chr17:80088072-80088072|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.76043701171875	2	459.760758	917.506963	-0.77821	-0.00035779	0.12569	5.7789E-05	-0.65252	-0.0003	459.7607761714127	34.249	0.14155	34.249	34.161	34.303	0					5	3	2	0	0	0	0.72381	1	13198	13198		30.504	4.9296	1	166090	+		26240	12362	17622	17684	26590	26590					0.04490945457757789
LTVKKVEH	8	Unmodified	_LTVKKVEH_					0	0	0			REV__nc|ENSG00000100813|Q9UKV3-3|ACIN1	REV__nc|ENSG00000100813|Q9UKV3-3|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2926025390625	2	477.292559	952.570566	0.3951	0.00018858	-0.19756	-9.4292E-05	0.19754	9.4285E-05	477.29247570432955	30.746	1.7055	30.746	30.445	32.151	0					101	41	4	0	0	0	0.66372	1	11288	11288		38.806	9.6566	1	1277800	+		26241	13574	17623	17685	26591	26591					0.09238350685518526
LTVMTMTM	8	2 Oxidation (M)	_LTVM(Oxidation (M))TMTM(Oxidation (M))_		LTVM(0.983)TM(0.017)TM(1)		LTVM(18)TM(-18)TM(45)	0	0	2		ENST00000534003.5_1_11:47776147-47786836:-|nuORF	ENST00000534003.5_1_11:47776147-47786836:-|nuORF	ENST00000534003.5_1_11:47776147-47786836:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2142333984375	2	480.215957	958.417361	-2.9254	-0.0014048	-0.53648	-0.00025763	-3.4619	-0.0016624	480.2156226964665	25.941	0.43517	25.941	25.767	26.202	0					16	8	3	0	0	0	0.55361	1	8290	8290		54.765	8.8127	3	269140			26242	10469	17624	17686	26592	26592		416;417			-0.06351091809108311
LTVNAVLISI	10	Unmodified	_LTVNAVLISI_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.82958984375	2	521.828975	1041.6434	0.40073	0.00020911	0.26668	0.00013916	0.66741	0.00034827	521.8293411700621	31.675	0.11725	31.675	31.617	31.735	0					4	2	2	0	0	0	0.41384	1	11881	11881		54.722	0	1	124340			26243	3912	17625	17687	26593	26593					0.12424059688282796
LTVSIGVAP	9	Unmodified	_LTVSIGVAP_					0	0	0			REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7610778808594	2	428.760561	855.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.131	1	39.131	38.631	39.631	0								0	0	0	0.32356	1	13967	13967		30.504	0	1		+		26244	17419	17626	17688	26594	26594					0.0730357052857471
LTVSIGVAP	9	Unmodified	_LTVSIGVAP_					0	0	0			REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.7604675292969	2	428.760561	855.506569	1.0416	0.0004466	-0.51137	-0.00021925	0.53023	0.00022734	428.7598590200349	39.28	0.70576	39.28	38.778	39.483	0					35	15	3	0	0	0	0.18605	1	15405	15405		63.306	9.9548	1	304730	+		26245	17419	17626	17688	26595	26595					0.0730357052857471
LTVSMDQRLE	10	Unmodified	_LTVSMDQRLE_					0	0	0		ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.3053588867188	2	596.305538	1190.59652	-0.55732	-0.00033233	0.76993	0.00045911	0.21261	0.00012678	596.3062833076901	23.579	0.40858	23.579	23.424	23.833	0					27	14	3	0	0	0	0.54861	1	7074	7074		20.947	0	1	151130			26246	4216	17627	17689	26596	26596					0.00884832074825681
LTVTGGPAV	9	Unmodified	_LTVTGGPAV_					0	0	0			REV__AGER|p.S283Afs*4|1|0.17|ENSG00000204305|chr6:32182365-32182365|G/-|frameshift_variant	REV__AGER|p.S283Afs*4|1|0.17|ENSG00000204305|chr6:32182365-32182365|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.7369079589844	2	407.737086	813.459619	1.1838	0.00048267	-1.1611	-0.00047344	0.022656	9.2378E-06	407.7365994825811	27.05	0.35803	27.05	26.811	27.169	0					17	7	3	0	0	0	0.16524	1	9753	9753		65.803	1.5959	1	384720	+		26247	12107	17628	17690	26597	26597					0.04542710977432307
LTVTGGPAV	9	Unmodified	_LTVTGGPAV_					0	0	0			REV__AGER|p.S283Afs*4|1|0.17|ENSG00000204305|chr6:32182365-32182365|G/-|frameshift_variant	REV__AGER|p.S283Afs*4|1|0.17|ENSG00000204305|chr6:32182365-32182365|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.73699951171875	2	407.737086	813.459619	-0.098346	-4.0099E-05	-0.45523	-0.00018561	-0.55358	-0.00022571	407.73683690420626	26.827	0.30823	26.827	26.639	26.947	0					11	7	2	0	0	0	0.18605	1	8709	8709		63.306	8.53	1	42981	+		26248	12107	17628	17690	26598	26598					0.04542710977432307
LTYARGEEA	9	Unmodified	_LTYARGEEA_					0	0	0		nc|ENSG00000197119|Q8N8R3-3|SLC25A29;ENSG00000197119|ENST00000359232|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.251220703125	2	505.251089	1008.48762	-0.31983	-0.0001616	0.98502	0.00049768	0.66518	0.00033608	505.25154031554774	26.258	0.21552	26.258	26.151	26.366	0					8	4	2	0	0	0	0.13519	1	9265	9265		71.296	19.96	1	505380			26249	7428	17629	17691	26599	26599					-0.016280108331329757
LTYARGEEA	9	Unmodified	_LTYARGEEA_					0	0	0		nc|ENSG00000197119|Q8N8R3-3|SLC25A29;ENSG00000197119|ENST00000359232|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.25115966796875	2	505.251089	1008.48762	1.2389	0.00062597	-1.3562	-0.00068523	-0.11729	-5.926E-05	505.2506388516201	26.295	0.41945	26.295	26.134	26.553	0					25	8	5	0	0	0	0.14603	1	9257	9257		68.787	2.3575	1	1363000			26250	7428	17629	17691	26600	26600					-0.016280108331329757
LTYCRRAL	8	Unmodified	_LTYCRRAL_					0	0	0			REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2748107910156	2	498.276386	994.53822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.164	1	33.164	32.664	33.664	0								0	0	0	1.7419	1	11609	11609		53.351	14.099	1		+		26251	16920	17630	17692	26601	26601					0.04073240010859536
LTYDIANNK	9	Unmodified	_LTYDIANNK_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2737426757812	2	526.274564	1050.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.932	1	28.932	28.432	29.432	0								0	0	0	0.25587	1	10657	10657		42.864	9.3487	1				26252	2936	17631	17693	26602	26602					0.011328487179980584
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.3237915039062	2	578.324057	1154.63356	0.80448	0.00046525	0.003093	1.7888E-06	0.80758	0.00046704	578.3239418251094	28.528	0.14127	28.528	28.459	28.6	0					15	6	3	0	0	0	0.010427	1	8920	8920		124.08	46.763	1	123970			26253	6760	17632	17694	26603	26603					0.062428716828890174
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.3243408203125	2	578.324057	1154.63356	-0.059514	-3.4419E-05	0.3472	0.0002008	0.28769	0.00016638	578.3242107926088	28.766	0.33612	28.766	28.671	29.007	0					20	8	4	0	0	0	0.0071744	1	10207	10207		145.16	77.662	1	840390			26254	6760	17632	17694	26604	26604					0.062428716828890174
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.3236083984375	2	578.324057	1154.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.53	1	28.53	28.03	29.03	0								0	0	0	0.0075199	1	9210	9210		108.09	63.971	1				26255	6760	17632	17694	26605	26605					0.062428716828890174
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.3239135742188	2	578.324057	1154.63356	-0.42314	-0.00024471	0.29303	0.00016947	-0.13011	-7.5247E-05	578.3242774346595	28.804	0.2154	28.804	28.695	28.911	0					10	4	3	0	0	0	0.0076184	1	10583	10583		131.03	20.912	1	493500			26256	6760	17632	17694	26606	26606					0.062428716828890174
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.32421875	2	578.324057	1154.63356	-1.6468	-0.00095236	2.1014	0.0012153	0.45468	0.00026295	578.325244262158	28.593	0.1697	28.593	28.506	28.675	0					8	4	2	0	0	0	0.099758	1	9521	9521		63.534	17.077	1	150590			26257	6760	17632	17694	26607	26607					0.062428716828890174
LTYLVVSRG	9	Unmodified	_LTYLVVSRG_					0	0	0		ENST00000606723.2_1_6:25998815-25999043:+|nuORF	ENST00000606723.2_1_6:25998815-25999043:+|nuORF	ENST00000606723.2_1_6:25998815-25999043:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.713	1	31.713	31.213	32.213	0								0	0	0	0.38123	1	10532	10532		12.207	0	1				26258	11083	17633	17695	26608	26608					0.07810333339955378
LTYMISKKL	9	Unmodified	_LTYMISKKL_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.22052001953125	3	366.219344	1095.6362	3.1582	0.0011566	0.06494	2.3782E-05	3.2232	0.0011804	366.2193924101868	16.771	0.89859	16.771	16.565	17.464	0					42	18	3	0	0	0	0.46194	1	4774	4774		36.447	7.2767	1	926220	+		26259	14673	17634	17696	26609	26609					0.09221003816196571
LTYNDFINK	9	Unmodified	_LTYNDFINK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2901611328125	2	564.290214	1126.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.721	1	39.721	39.221	40.221	0								0	0	0	0.045272	1	15630	15630		88.177	13.134	1				26260	3738;1574;22557	17635	17697	26610	26610					0.007654217520894235
LTYNDFINK	9	Unmodified	_LTYNDFINK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.291015625	2	564.290214	1126.56587	1.7374	0.00098038	-0.29124	-0.00016435	1.4461	0.00081603	564.289955462605	39.692	0.27617	39.692	39.559	39.835	0					13	6	3	0	0	0	0.032383	1	15693	15693		106.68	47.901	1	421530			26261	3738;1574;22557	17635	17697	26611	26611					0.007654217520894235
LTYNDFINK	9	Unmodified	_LTYNDFINK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.2906494140625	2	564.290214	1126.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.655	1	39.655	39.155	40.155	0								0	0	0	0.0047356	1	15687	15687		115.49	44.198	1				26262	3738;1574;22557	17635	17697	26612	26612					0.007654217520894235
LTYSSLKASTK	11	Unmodified	_LTYSSLKASTK_					0	0	0			REV__nc|ENSG00000162739|Q96DU3-2|SLAMF6	REV__nc|ENSG00000162739|Q96DU3-2|SLAMF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.83740234375	2	599.837528	1197.6605	-0.12089	-7.2515E-05	0.42273	0.00025357	0.30184	0.00018105	599.8377171575497	35.881	0.64971	35.881	35.484	36.134	0					38	17	3	0	0	0	0.64768	1	13561	13561		29.551	0	1	390900	+		26263	15838	17636	17698	26613	26613					0.06957935503419321
LTYYCTGRL	9	Unmodified	_LTYYCTGRL_					0	0	0			REV__nc|ENSG00000088812|O75882-3|ATRN	REV__nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.5171813964844	3	363.851432	1088.53247	0.4853	0.00017658	-0.25977	-9.4516E-05	0.22554	8.2062E-05	363.85130125427884	24.834	0.26194	24.834	24.729	24.991	0					11	5	3	0	0	0	0.51817	1	8748	8748		30.318	0	1	323150	+		26264	13396	17637	17699	26614	26614					-0.008259032914338604
LVAALAEATV	10	Unmodified	_LVAALAEATV_					0	0	0		ENST00000527128.5_1_9:100000750-100013832:+|nuORF	ENST00000527128.5_1_9:100000750-100013832:+|nuORF	ENST00000527128.5_1_9:100000750-100013832:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2854309082031	2	479.2844	956.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.881	1	35.881	35.381	36.381	0								0	0	0	0.35368	1	12144	12144		42.396	4.5846	1				26265	10384	17638	17700	26615	26615					0.07423224728768218
LVAALAEATV	10	Unmodified	_LVAALAEATV_					0	0	0		ENST00000527128.5_1_9:100000750-100013832:+|nuORF	ENST00000527128.5_1_9:100000750-100013832:+|nuORF	ENST00000527128.5_1_9:100000750-100013832:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2845153808594	2	479.2844	956.554247	-0.31466	-0.00015081	0.28386	0.00013605	-0.030805	-1.4764E-05	479.2846680524512	35.87	0.26657	35.87	35.781	36.047	0					15	10	2	0	0	0	0.46215	1	12818	12818		49.442	8.6634	1	60293			26266	10384	17638	17700	26616	26616					0.07423224728768218
LVADVVQDVL	10	Unmodified	_LVADVVQDVL_					0	0	0		ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.54168701171875	3	357.541252	1069.60193	0.48628	0.00017387	0.66104	0.00023635	1.1473	0.00041021	357.5414964501517	15.25	0.30018	15.25	15.19	15.49	0					11	7	3	0	0	0	0.62235	1	3922	3922		31.53	0	1	423260			26267	2118	17639	17701	26617	26617					0.06990878928968414
LVADVVQDVL	10	Unmodified	_LVADVVQDVL_					0	0	0		ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.5416259765625	3	357.541252	1069.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.256	1	15.256	14.756	15.756	0								0	0	0	0.37602	1	4134	4134		37.812	1.3648	1				26268	2118	17639	17701	26618	26618					0.06990878928968414
LVAEKITK	8	Unmodified	_LVAEKITK_					0	0	0			REV__ENST00000438116.2_1_22:40983448-40983622:-|nuORF	REV__ENST00000438116.2_1_22:40983448-40983622:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2895812988281	2	451.289485	900.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.526	1	30.526	30.026	31.026	0								0	0	0	1.7419	1	11311	11311		69.628	2.134	1		+		26269	19220	17640	17702	26619	26619					0.11015832453983876
LVAGPHQLIY	10	Unmodified	_LVAGPHQLIY_					0	0	0			REV__nc|ENSG00000153250|P29558-2|RBMS1	REV__nc|ENSG00000153250|P29558-2|RBMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.819091796875	2	555.818941	1109.62333	0.57739	0.00032093	-0.70879	-0.00039396	-0.1314	-7.3036E-05	555.8186294535669	38.739	0.12725	38.739	38.659	38.786	0					11	5	3	0	0	0	0.31613	1	14718	14718		44.117	0	1	186310	+		26270	15536	17641	17703	26620	26620					0.07290308748338248
LVAGVGGI	8	Unmodified	_LVAGVGGI_					0	0	0			REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.2170715332031	2	343.215789	684.417025	1.4707	0.00050475	1.3619	0.00046744	2.8326	0.00097219	343.2161321864663	29.612	0.45605	29.612	29.459	29.916	0					19	9	3	0	0	0	0.78431	1	10970	10970		10.185	0	1	533230	+		26271	21748	17642	17704	26621	26621					0.0621936063986368
LVAHLPATSV	10	Unmodified	_LVAHLPATSV_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341796875	3	336.53432	1006.58113	0.24152	8.1278E-05	-0.70822	-0.00023834	-0.46671	-0.00015706	336.53406083171086	22.354	0.5408	22.354	22.24	22.781	0					26	16	2	0	0	0	0.68218	1	6443	6443		22.58	9.1256	1	174870	+		26272	21237	17643	17705	26622	26622					0.07810333339944009
LVAHLPATSV	10	Unmodified	_LVAHLPATSV_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5337219238281	3	336.53432	1006.58113	-0.67418	-0.00022688	0.23779	8.0024E-05	-0.43639	-0.00014686	336.53443908670744	29.028	0.72597	29.028	28.714	29.44	0					44	28	2	0	0	0	0.68218	1	9549	9549		29.17	0	1	81020	+		26273	21237	17643	17705	26623	26623					0.07810333339944009
LVAHLPATSV	10	Unmodified	_LVAHLPATSV_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2964782714844	2	504.297842	1006.58113	-2.0166	-0.001017	-1.6356	-0.00082483	-3.6522	-0.0018418	504.2961856075642	21.193	0.62229	21.193	20.768	21.39	0					23	14	2	0	0	0	0.56015	1	6134	6134		38.806	6.8513	1	110040	+		26274	21237	17643	17705	26624	26624					0.07810333339944009
LVAIKRSSTT	10	Unmodified	_LVAIKRSSTT_					0	0	0			REV__ENST00000554272.5_1_12:25215794-25219317:+|nuORF	REV__ENST00000554272.5_1_12:25215794-25219317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3272094726562	2	538.327131	1074.63971	1.4592	0.00078551	-0.15779	-8.4941E-05	1.3014	0.00070057	538.3268814697864	56.103	0.34804	56.103	56.002	56.35	0					46	21	3	0	0	0	0.6796	1	16265	16265		24.519	6.2571	1	380410	+		26275	20232	17644	17706	26625	26625					0.10537389914406958
LVAIKRSSTT	10	Unmodified	_LVAIKRSSTT_					0	0	0			REV__ENST00000554272.5_1_12:25215794-25219317:+|nuORF	REV__ENST00000554272.5_1_12:25215794-25219317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.32666015625	2	538.327131	1074.63971	0.51332	0.00027633	0.25048	0.00013484	0.7638	0.00041117	538.3270756593952	56.077	0.31641	56.077	55.992	56.308	0					43	20	3	0	0	0	0.71938	1	16802	16802		19.104	2.6304	1	309800	+		26276	20232	17644	17706	26626	26626					0.10537389914406958
LVAIPYLY	8	Unmodified	_LVAIPYLY_					0	0	0		ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2786865234375	2	476.281129	950.547705	-2.7472	-0.0013084	-1.8519	-0.00088202	-4.5991	-0.0021904	476.28038554546237	32.383	0.17226	32.383	32.303	32.476	0					10	5	2	0	0	0	0.70073	1	11247	11247		33.493	5.2387	1	148570			26277	8131	17645	17707	26627	26627					0.07045331568042457
LVALQAQAEP	10	Unmodified	_LVALQAQAEP_					0	0	0		ENSG00000240247|ENST00000382689|DEFA1B;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000206047|ENST00000382692|DEFA1	ENSG00000240247|ENST00000382689|DEFA1B	ENSG00000240247|ENST00000382689|DEFA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7945556640625	2	520.292756	1038.57096	1.0136	0.00052736	-0.30404	-0.00015819	0.70954	0.00036917	520.2927129192084	26.365	0.19292	26.365	26.246	26.439	0					9	4	3	0	0	0	0.28723	1	8480	8480		68.787	3.3214	1	131500			26278	7763	17646	17708	26628	26628					0.053217256147036096
LVALSFHSLE	10	Unmodified	_LVALSFHSLE_					0	0	0		ENSG00000169519|ENST00000407364|METTL15;ENST00000481421.1_1_3:156431675-156432128:-|nuORF	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.5411376953125	3	372.541363	1114.60226	0.76781	0.00028604	-0.78318	-0.00029177	-0.015366	-5.7245E-06	372.5408915356502	37.408	0.26475	37.408	37.3	37.565	0					10	5	3	0	0	0	0.42631	1	14635	14635		47.96	5.0953	1	360730			26279	6169	17647	17709	26629	26629					0.04954298648794975
LVAMEQFY	8	Unmodified	_LVAMEQFY_					0	0	0		L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|19|3|sense	L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|19|3|sense	L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|19|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7423095703125	2	500.744053	999.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.422	1	19.422	18.922	19.922	0								0	0	0	1.7419	1	5257	5257		35.201	1.6851	1				26280	11280	17648	17710	26630	26630					-0.026203795857895784
LVAPTPLSKN	10	Unmodified	_LVAPTPLSKN_					0	0	0			REV__nc|ENSG00000129116|Q8WX93-8|PALLD	REV__nc|ENSG00000129116|Q8WX93-8|PALLD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3118286132812	2	520.310949	1038.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.164	1	40.164	39.664	40.664	0								0	0	0	0.38475	1	15822	15822		35.152	0.97948	1		+		26281	14539	17649	17711	26631	26631					0.08958602511438585
LVATSGIKL	9	Unmodified	_LVATSGIKL_					0	0	0			REV__ENSG00000176087|ENST00000323146|SLC35A4	REV__ENSG00000176087|ENST00000323146|SLC35A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2893981933594	2	451.289485	900.564418	-0.49907	-0.00022522	0.37081	0.00016734	-0.12825	-5.788E-05	451.28965145442186	36.819	0.12638	36.819	36.776	36.902	0					5	3	2	0	0	0	0.2873	1	13927	13927		51.335	0	1	86355	+		26282	16641	17650	17712	26632	26632					0.11015832453995245
LVCALGLSVGL	11	Unmodified	_LVCALGLSVGL_					0	0	0		ENSG00000237541|ENST00000374940|HLA-DQA2	ENSG00000237541|ENST00000374940|HLA-DQA2	ENSG00000237541|ENST00000374940|HLA-DQA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8125610351562	2	522.809728	1043.6049	0.45153	0.00023606	3.1621	0.0016532	3.6136	0.0018892	522.8117251123361	29.033	0.16701	29.033	28.959	29.126	0					7	3	3	0	0	0	0.61618	1	10594	10594		35.618	0	1	132740			26283	7917	17651	17713	26633	26633					0.0848443078211858
LVCCATNVL	9	Unmodified	_LVCCATNVL_					0	0	0			REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2382507324219	2	468.238081	934.461609	0.35781	0.00016754	-1.4151	-0.00066261	-1.0573	-0.00049507	468.2374904847239	19.146	0.2793	19.146	19.015	19.294	0					14	6	4	0	0	0	0.1115	1	5714	5714		76.774	5.3962	1	1073900	+		26284	15719	17652	17714	26634	26634					-0.008243196006219478
LVCDPHSAK	9	Unmodified	_LVCDPHSAK_					0	0	0			REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.24505615234375	2	485.244752	968.474951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.599	1	15.599	15.099	16.099	0								0	0	0	0.32356	1	3590	3590		30.504	4.9296	1		+		26285	20792	17653	17715	26635	26635					-0.01054745497026488
LVCHQRIH	8	Unmodified	_LVCHQRIH_					0	0	0		ZNF3|p.R413C|1|0.27|ENSG00000166526|chr7:100071247-100071247|G/A|missense_variant;ZFP14|p.R385C|1|0.26|ENSG00000142065|chr19:36340673-36340673|G/A|missense_variant	ZNF3|p.R413C|1|0.27|ENSG00000166526|chr7:100071247-100071247|G/A|missense_variant	ZNF3|p.R413C|1|0.27|ENSG00000166526|chr7:100071247-100071247|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2724914550781	2	503.274178	1004.5338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.643	1	23.643	23.143	24.143	0								0	0	0	1.7419	1	7250	7250		33.516	3.0119	1				26286	23137	17654	17716	26636	26636					0.03171775587952652
LVCLYHVL	8	Unmodified	_LVCLYHVL_					0	0	0		ENSG00000205730|ENST00000381440|ITPRIPL2;ITPRIPL2|p.G223Afs*56|1|0.45|ENSG00000205730|chr16:19115124-19115124|G/-|frameshift_variant	ENSG00000205730|ENST00000381440|ITPRIPL2	ENSG00000205730|ENST00000381440|ITPRIPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.273681640625	2	480.272781	958.531009	2.3188	0.0011137	-0.61008	-0.00029301	1.7087	0.00082066	480.272531825447	31.992	0.61942	31.992	31.633	32.253	0					43	12	5	0	0	0	0.63381	1	11983	11983		43.626	0	1	2014800			26287	7758	17655	17717	26637	26637					0.05008507410445873
LVCSGCVSSLL	11	Unmodified	_LVCSGCVSSLL_					0	0	0			REV__ENST00000447799.5_1_12:104165049-104171017:-|nuORF	REV__ENST00000447799.5_1_12:104165049-104171017:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7762451171875	2	540.775028	1079.5355	0.30888	0.00016704	1.1584	0.00062643	1.4673	0.00079347	540.7756190924208	28.266	0.20755	28.266	28.157	28.365	0					7	4	2	0	0	0	0.56817	1	10368	10368		39.253	6.4404	1	217500	+		26288	19291	17656	17718	26638	26638					-0.0010839622896128276
LVCTECVLL	9	Unmodified	_LVCTECVLL_					0	0	0		ENSG00000182083|ENST00000319423|OR6B2;ENSG00000178586|ENST00000641019|OR6B3	ENSG00000182083|ENST00000319423|OR6B2	ENSG00000182083|ENST00000319423|OR6B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7613830566406	2	496.761389	991.508225	0.14686	7.2952E-05	2.2203	0.001103	2.3672	0.0011759	496.76299378662264	29.342	0.41891	29.342	29.054	29.472	0					17	11	2	0	0	0	0.23186	1	9850	9850		57.811	7.7867	1	113520			26289	6876	17657	17719	26639	26639					0.012131202306704836
LVDDETVKL	9	Unmodified	_LVDDETVKL_					0	0	0			REV__nc|ENSG00000164398|Q9UKU0-5|ACSL6	REV__nc|ENSG00000164398|Q9UKU0-5|ACSL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.284423828125	2	516.284597	1030.55464	0.81089	0.00041865	3.0548	0.0015771	3.8656	0.0019958	516.283974751265	31.299	0.19164	31.299	31.164	31.356	0					14	5	4	0	0	0	0.35021	1	10774	10774		45.972	1.5951	1	147500	+		26290	21097	17658	17720	26640	26640					0.04058599657969353
LVDESVSVT	9	Unmodified	_LVDESVSVT_					0	0	0		KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.245361328125	2	474.747847	947.481142	-0.60307	-0.0002863	-1.4399	-0.00068359	-2.043	-0.00096989	474.7485095900716	29.074	0.41418	29.074	28.86	29.274	0					22	8	4	0	0	0	0.25109	1	10664	10664		55.504	4.1688	1	708440			26291	1282	17659	17721	26641	26641					0.005300512155031356
LVDHSPSPDLE	11	Unmodified	_LVDHSPSPDLE_					0	0	0			REV__ENST00000429182.5_1_3:49061987-49062130:-|nuORF	REV__ENST00000429182.5_1_3:49061987-49062130:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	604.7905883789062	2	604.793318	1207.57208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.262	1	12.262	11.762	12.762	0								0	0	0	0.45674	1	2324	2324		14.137	0	1		+		26292	19145	17660	17722	26642	26642					-0.023401048070127217
LVDQRLGAP	9	Unmodified	_LVDQRLGAP_					0	0	0			REV__PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant	REV__PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7800598144531	2	484.779816	967.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.614	1	36.614	36.114	37.114	0								0	0	0	0.29774	1	14272	14272		35.618	0	1		+		26293	13524	17661	17723	26643	26643					0.06000876163091107
LVDSSPTKTAI	11	Unmodified	_LVDSSPTKTAI_					0	0	0			REV__nc|ENSG00000162521|Q09028-4|RBBP4	REV__nc|ENSG00000162521|Q09028-4|RBBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.88128662109375	3	377.880044	1130.6183	-0.12958	-4.8967E-05	1.8593	0.00070258	1.7297	0.00065361	377.88075007810824	23.347	0.27497	23.347	23.251	23.526	0					10	6	2	0	0	0	0.77007	1	7146	7146		13.508	0	1	259680	+		26294	13624	17662	17724	26644	26644					0.05821960095045142
LVDVPHVTL	9	Unmodified	_LVDVPHVTL_					0	0	0			REV__SLC25A19|p.R143H|1|0.27|ENSG00000125454|chr17:75283454-75283454|C/T|missense_variant	REV__SLC25A19|p.R143H|1|0.27|ENSG00000125454|chr17:75283454-75283454|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7928466796875	2	496.792392	991.570232	-2.3373	-0.0011611	2.1904	0.0010882	-0.14691	-7.2983E-05	496.79337990419856	37.944	0.27186	37.944	37.794	38.066	0					17	13	2	0	0	0	0.43426	1	13557	13557		38.806	0	1	165080	+		26295	14430	17663	17725	26645	26645					0.07410930965670559
LVDVVMEYI	9	Unmodified	_LVDVVMEYI_					0	0	0			REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7861328125	2	540.785918	1079.55728	1.9916	0.001077	-2.1985	-0.0011889	-0.20699	-0.00011194	540.784748869212	26.223	0.30872	26.223	26.017	26.326	0					8	6	2	0	0	0	0.42902	1	9374	9374		24.203	0	1	408390	+		26296	13171	17664	17726	26646	26646					0.02068731791268874
LVDWLLEHC	9	Unmodified	_LVDWLLEHC_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	376.5230407714844	3	376.523315	1126.54812	-1.0849	-0.00040851	0.17249	6.4947E-05	-0.91245	-0.00034356	376.52338372321907	16.774	0.088717	16.774	16.72	16.808	0					5	3	2	0	0	0	0.55379	1	4089	4089		26.693	0.62953	1	129230			26297	4064	17665	17727	26647	26647					-0.010096167743995466
LVEDKVKS	8	Unmodified	_LVEDKVKS_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.268798828125	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.183	1	33.183	32.683	33.683	0								0	0	0	1.7419	1	11119	11119		58.782	0	1				26298	2005	17666	17728	26648	26648					0.06134651694674176
LVEFTLLPV	9	Unmodified	_LVEFTLLPV_					0	0	0			REV__TMEM185B|p.P341Lfs*4|3|0.55|ENSG00000226479|chr2:120221955-120221955|G/-|frameshift_variant	REV__TMEM185B|p.P341Lfs*4|3|0.55|ENSG00000226479|chr2:120221955-120221955|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.810302734375	2	515.812793	1029.61103	-1.535	-0.00079177	-0.78827	-0.0004066	-2.3233	-0.0011984	515.8122601255757	38.787	0.19698	38.787	38.67	38.867	0					14	10	2	0	0	0	0.50461	1	13839	13839		31.955	1.6371	1	55419	+		26299	17630	17667	17729	26649	26649					0.09741272285282321
LVEGQVPHSL	10	Unmodified	_LVEGQVPHSL_					0	0	0		FBXO7|p.S174L|1|0.11|ENSG00000100225|chr22:32484000-32484000|C/T|missense_variant	FBXO7|p.S174L|1|0.11|ENSG00000100225|chr22:32484000-32484000|C/T|missense_variant	FBXO7|p.S174L|1|0.11|ENSG00000100225|chr22:32484000-32484000|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.2003173828125	3	360.201229	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.398	1	18.398	17.898	18.898	0								0	0	0	0.4201	1	4793	4793		16.007	0	1				26300	11135	17668	17730	26650	26650					0.0461712798901317
LVEKILLK	8	Unmodified	_LVEKILLK_					0	0	0			REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant;REV__ENSG00000127249|ENST00000342695|ATP13A4	REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.3305969238281	2	478.331153	954.647754	0.8662	0.00041433	-1.9142	-0.00091563	-1.048	-0.0005013	478.3301585107085	40.295	0.13202	40.295	40.176	40.308	0					7	3	3	0	0	0	0.58597	1	15983	15983		51.335	0	1	74853	+		26301	12251;14483	17669	17731	26651	26651					0.16861568901845203
LVELPKPAP	9	Unmodified	_LVELPKPAP_					0	0	0			REV__ENST00000301061.8_2_12:49364122-49365273:-|nuORF	REV__ENST00000301061.8_2_12:49364122-49365273:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2972717285156	2	482.29731	962.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.878	1	42.878	42.378	43.378	0								0	0	0	0.28996	1	14930	14930		37.159	0	1		+		26302	18202	17670	17732	26652	26652					0.09728118971031563
LVEPLLKR	8	Unmodified	_LVEPLLKR_					0	0	0			REV__ENSG00000092096|ENST00000354772|SLC22A17	REV__ENSG00000092096|ENST00000354772|SLC22A17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	323.2147521972656	3	323.21481	966.622602	1.5178	0.00049057	-1.6644	-0.00053797	-0.14665	-4.7399E-05	323.2141101651504	33.762	0.23896	33.762	33.681	33.92	0					11	6	2	0	0	0	0.7126	1	12962	12962		31.955	0	1	935960	+		26303	13449	17671	17733	26653	26653					0.13795514099274442
LVEPLLKR	8	Unmodified	_LVEPLLKR_					0	0	0			REV__ENSG00000092096|ENST00000354772|SLC22A17	REV__ENSG00000092096|ENST00000354772|SLC22A17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	323.21466064453125	3	323.21481	966.622602	-1.9069	-0.00061634	1.8151	0.00058666	-0.091838	-2.9684E-05	323.21536815339886	33.528	0.12854	33.528	33.441	33.569	0					8	3	3	0	0	0	0.77246	1	11786	11786		24.203	0	1	222620	+		26304	13449	17671	17733	26654	26654					0.13795514099274442
LVEPQSQAL	9	Unmodified	_LVEPQSQAL_					0	0	0		ENST00000529778.5_1_11:6422476-6423430:-|nuORF;ENST00000533407.6_1_11:6422737-6440257:-|nuORF;ENST00000526925.6_1_11:6422737-6426086:-|nuORF;nc|ENSG00000166313|O00213-4|APBB1;nc|ENSG00000166313|O00213-6|APBB1;nc|ENSG00000166313|O00213-3|APBB1;nc|ENSG00000166313|O00213-5|APBB1;nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	ENST00000529778.5_1_11:6422476-6423430:-|nuORF	ENST00000529778.5_1_11:6422476-6423430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7714538574219	2	492.771657	983.528761	-0.59741	-0.00029439	0.54398	0.00026806	-0.053431	-2.6329E-05	492.7720215594334	38.275	0.24792	38.275	38.218	38.466	0					7	5	2	0	0	0	0.21263	1	15047	15047		60.118	5.3419	1	88476			26305	5885	17672	17734	26655	26655					0.036337502063247484
LVESLMTRKL	10	Unmodified	_LVESLMTRKL_					0	0	0			REV__nc|ENSG00000276234|O75478|TADA2A	REV__nc|ENSG00000276234|O75478|TADA2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	397.2373962402344	3	397.237286	1188.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.192	1	22.192	21.692	22.692	0								0	0	0	0.4201	1	6568	6568		16.717	0	1		+		26306	17832	17673	17735	26656	26656					0.10323176247925403
LVETKKIET	9	Unmodified	_LVETKKIET_					0	0	0			REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	REV__nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8162231445312	2	530.816064	1059.61758	0.28742	0.00015257	0.079939	4.2433E-05	0.36736	0.000195	530.8161036954607	23.537	0.16612	23.537	23.429	23.595	0					7	3	3	0	0	0	0.071197	1	8110	8110		87.754	14.875	1	418100	+		26307	21127	17674	17736	26657	26657					0.09015165445998718
LVEVDVNLV	9	Unmodified	_LVEVDVNLV_					0	0	0			REV__ENST00000457976.1_1_9:93881489-93881789:-|nuORF	REV__ENST00000457976.1_1_9:93881489-93881789:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2894592285156	2	500.289682	998.564812	-0.6617	-0.00033104	-0.019259	-9.635E-06	-0.68096	-0.00034068	500.28983776461615	34.109	0.35357	34.109	33.908	34.261	0					18	7	3	0	0	0	0.33044	1	13024	13024		47.657	3.5405	1	412320	+		26308	19356	17675	17737	26658	26658					0.06547207383175646
LVEVEGLDGDI	11	Unmodified	_LVEVEGLDGDI_					0	0	0		tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.8004760742188	2	579.798069	1157.58158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.635	1	23.635	23.135	24.135	0								0	0	0	0.39048	1	7128	7128		39.253	0	1				26309	22618	17676	17738	26659	26659					0.009096634785009883
LVEVVVPTGA	10	Unmodified	_LVEVVVPTGA_					0	0	0		nc|ENSG00000144115|Q86YJ6-5|THNSL2;nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2;ENSG00000144115|ENST00000674334|THNSL2;ENST00000476349.1_1_2:88478486-88482640:+|nuORF	nc|ENSG00000144115|Q86YJ6-5|THNSL2	nc|ENSG00000144115|Q86YJ6-5|THNSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.29180908203125	2	492.292225	982.569897	0.58227	0.00028665	-0.66263	-0.00032621	-0.080361	-3.9561E-05	492.2916644037797	43.786	0.17534	43.786	43.704	43.88	0					15	9	2	0	0	0	0.46215	1	17095	17095		49.442	3.4693	1	56473			26310	4601	17677	17739	26660	26660					0.07791511245807214
LVEVVVPTGA	10	Unmodified	_LVEVVVPTGA_					0	0	0		nc|ENSG00000144115|Q86YJ6-5|THNSL2;nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2;ENSG00000144115|ENST00000674334|THNSL2;ENST00000476349.1_1_2:88478486-88482640:+|nuORF	nc|ENSG00000144115|Q86YJ6-5|THNSL2	nc|ENSG00000144115|Q86YJ6-5|THNSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.29205322265625	2	492.292225	982.569897	-0.73797	-0.0003633	0.44356	0.00021836	-0.29441	-0.00014494	492.2924458966627	43.77	0.1744	43.77	43.697	43.871	0					22	9	3	0	0	0	0.46215	1	17085	17085		49.442	3.4896	1	203450			26311	4601	17677	17739	26661	26661					0.07791511245807214
LVFAERLSE	9	Unmodified	_LVFAERLSE_					0	0	0		nc|ENSG00000157343|Q5T9G4-3|ARMC12;ENSG00000157343|ENST00000373866|ARMC12;nc|ENSG00000157343|Q5T9G4-2|ARMC12	nc|ENSG00000157343|Q5T9G4-3|ARMC12	nc|ENSG00000157343|Q5T9G4-3|ARMC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2928466796875	2	532.292756	1062.57096	-1.2656	-0.00067366	1.4997	0.0007983	0.23416	0.00012464	532.2934822070466	33.528	0.43266	33.528	33.374	33.807	0					18	12	2	0	0	0	0.17854	1	11747	11747		64.207	0.901	1	398970			26312	5210	17678	17740	26662	26662					0.04217725614716983
LVFAIAAAAY	10	Unmodified	_LVFAIAAAAY_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000496082.5_1_19:19764878-19766379:-|nuORF;ENST00000473243.5_1_19:19766211-19767540:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.28912353515625	2	505.289485	1008.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.952	1	40.952	40.452	41.452	0								0	0	0	0.38459	1	16103	16103		35.201	1.0282	1				26313	2392	17679	17741	26663	26663					0.060478324539644746
LVFDGVDVNR	10	Unmodified	_LVFDGVDVNR_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.53643798828125	3	378.536501	1132.58767	0.21499	8.1381E-05	-0.22053	-8.3477E-05	-0.0055382	-2.0964E-06	378.53639349909594	25.661	0.39033	25.661	25.525	25.916	0					14	7	3	0	0	0	0.7005	1	8800	8800		33.922	11.962	1	504590	+		26314	14693	17680	17742	26664	26664					0.026682265006456873
LVFEAGALL	9	Unmodified	_LVFEAGALL_					0	0	0		ENST00000344111.3_1_7:1008668-1008785:-|nuORF	ENST00000344111.3_1_7:1008668-1008785:-|nuORF	ENST00000344111.3_1_7:1008668-1008785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7750244140625	2	466.776211	931.537869	-2.2367	-0.001044	-0.8286	-0.00038677	-3.0653	-0.0014308	466.7759444081125	28.399	0.12889	28.399	28.313	28.442	0					5	3	2	0	0	0	0.47428	1	9432	9432		35.201	8.4046	1	89336			26315	8755	17681	17743	26665	26665					0.06936143562666075
LVFESETIKF	10	Unmodified	_LVFESETIKF_					0	0	0			REV__ENST00000484538.1_1_2:63826339-63826555:+|nuORF	REV__ENST00000484538.1_1_2:63826339-63826555:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	606.8265991210938	2	606.829172	1211.64379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.656	1	48.656	48.156	49.156	0								0	0	0	0.4162	1	16130	16130		25.574	4.6271	1		+		26316	19636	17682	17744	26666	26666					0.046434346174464736
LVFITRRGHPD	11	Unmodified	_LVFITRRGHPD_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	655.8692626953125	2	655.870028	1309.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.822	1	40.822	40.322	41.322	0								0	0	0	0.41166	1	13159	13159		19.263	13.705	1		+		26317	17438	17683	17745	26667	26667					0.08302974819957853
LVFLEFKN	8	Unmodified	_LVFLEFKN_					0	0	0			REV__CNGA2|p.K126N|1|0.73|ENSG00000183862|chrX:151740797-151740797|G/T|missense_variant	REV__CNGA2|p.K126N|1|0.73|ENSG00000183862|chrX:151740797-151740797|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2887878417969	2	505.289485	1008.56442	0.80168	0.00040508	-1.2412	-0.00062717	-0.43953	-0.00022209	505.2888724489667	40.974	0.24427	40.974	40.8	41.045	0					10	6	2	0	0	0	0.60719	1	15584	15584		47.916	0	1	73708	+		26318	12525	17684	17746	26668	26668					0.06047832453987212
LVFLNHCF	8	Unmodified	_LVFLNHCF_					0	0	0		ENST00000554157.5_1_14:20757788-20760378:-|nuORF	ENST00000554157.5_1_14:20757788-20760378:-|nuORF	ENST00000554157.5_1_14:20757788-20760378:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7576904296875	2	496.754756	991.494958	0.1237	6.145E-05	2.2511	0.0011182	2.3748	0.0011797	496.75596168361886	21.354	0.3345	21.354	21.135	21.469	0					23	10	4	0	0	0	0.55361	1	5800	5800		54.765	1.4132	1	483910			26319	10642	17685	17747	26669	26669					-0.0011294976641238463
LVFTSKQS	8	Unmodified	_LVFTSKQS_					0	0	0		ENST00000320650.8_1_4:142640610-142641689:+|nuORF	ENST00000320650.8_1_4:142640610-142641689:+|nuORF	ENST00000320650.8_1_4:142640610-142641689:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.25537109375	2	455.255643	908.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.083	1	23.083	22.583	23.583	0								0	0	0	1.7419	1	6986	6986		24.203	4.8428	1				26320	8612	17686	17748	26670	26670					0.038823825231816045
LVGDKFILN	9	Unmodified	_LVGDKFILN_					0	0	0			REV__ENST00000518333.1_1_8:124821116-124824941:+|nuORF	REV__ENST00000518333.1_1_8:124821116-124824941:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.8021240234375	2	509.800217	1017.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.114	1	35.114	34.614	35.614	0								0	0	0	0.22075	1	11867	11867		32.812	0	1		+		26321	16673	17687	17749	26671	26671					0.07779217482720924
LVGDVGQTV	9	Unmodified	_LVGDVGQTV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2451477050781	2	444.245275	886.475997	-0.21857	-9.7099E-05	-0.40426	-0.00017959	-0.62283	-0.00027669	444.24520243718524	19.389	0.51103	19.389	18.984	19.495	0					16	10	2	0	0	0	0.33044	1	6111	6111		47.657	0	1	178330			26322	6381	17688	17750	26672	26672					0.02821792143527091
LVGKPLRRRH	10	Unmodified	_LVGKPLRRRH_					0	0	0		ENST00000366844.7_2_1:225755113-225840663:-|nuORF	ENST00000366844.7_2_1:225755113-225840663:-|nuORF	ENST00000366844.7_2_1:225755113-225840663:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.2674865722656	3	411.266791	1230.77854	0.87569	0.00036014	0.81162	0.00033379	1.6873	0.00069394	411.2671994333759	29.381	0.45726	29.381	29.241	29.698	0					17	9	4	0	0	0	0.75135	1	10780	10780		12.812	0.60503	1	328830			26323	8901	17689	17751	26673	26673					0.17238397393248306
LVGLHNIGQ	9	Unmodified	_LVGLHNIGQ_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7741394042969	2	475.774534	949.534515	-0.0029797	-1.4177E-06	-1.2517	-0.00059553	-1.2547	-0.00059694	475.77440598404917	22.065	0.11823	22.065	21.989	22.107	0					5	3	2	0	0	0	0.45358	1	6192	6192		37.159	0.13063	1	59120			26324	7049	17690	17752	26674	26674					0.05772893508662946
LVGLPTAPGL	10	Unmodified	_LVGLPTAPGL_					0	0	0		ENSG00000182083|ENST00000319423|OR6B2;OR6B2|p.H56Pfs*21|1|0.32|ENSG00000182083|chr2:240030263-240030264|-/G|frameshift_variant	ENSG00000182083|ENST00000319423|OR6B2	ENSG00000182083|ENST00000319423|OR6B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.28924560546875	2	469.289485	936.564418	-0.52337	-0.00024561	0.31785	0.00014917	-0.20551	-9.6445E-05	469.2895866304438	29.956	0.60891	29.956	29.456	30.065	0					20	12	2	0	0	0	0.64178	1	11000	11000		29.15	0	1	155290			26325	6876	17691	17753	26675	26675					0.09359832453992567
LVGLSPVDKA	10	Unmodified	_LVGLSPVDKA_					0	0	0			REV__ENST00000551759.1_1_12:56998820-56999634:-|nuORF	REV__ENST00000551759.1_1_12:56998820-56999634:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	333.53448486328125	3	333.534209	997.580796	-0.7026	-0.00023434	1.4243	0.00047504	0.72168	0.00024071	333.53462690696733	22.145	0.17252	22.145	22.028	22.2	0					8	5	2	0	0	0	0.56015	1	6456	6456		42.864	11.334	1	34542	+		26326	12275	17692	17754	26676	26676					0.08190913620080664
LVGLVGFC	8	Unmodified	_LVGLVGFC_					0	0	0			REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.22711181640625	2	404.2253	806.436046	0.60422	0.00024424	3.9924	0.0016138	4.5967	0.0018581	404.2266666030734	28.599	0.31477	28.599	28.495	28.809	0					14	6	3	0	0	0	0.55232	1	10396	10396		54.895	4.87	1	359660	+		26327	12929	17693	17755	26677	26677					0.025085739392579853
LVGPFQHPW	9	Unmodified	_LVGPFQHPW_					0	0	0			REV__ENST00000564777.5_1_15:74281135-74282785:-|nuORF	REV__ENST00000564777.5_1_15:74281135-74282785:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7847290039062	2	540.784902	1079.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.073	1	26.073	25.573	26.573	0								0	0	0	0.29985	1	8342	8342		35.201	0	1		+		26328	20329	17694	17756	26678	26678					0.01865483888309427
LVGRGSSTSTV	11	Unmodified	_LVGRGSSTSTV_					0	0	0		ENST00000339570.9_1_12:125262795-125262981:-|nuORF	ENST00000339570.9_1_12:125262795-125262981:-|nuORF	ENST00000339570.9_1_12:125262795-125262981:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.292724609375	2	532.290745	1062.56694	3.4098	0.001815	0.64764	0.00034473	4.0574	0.0021597	532.2910943199139	33.676	0.42325	33.676	33.517	33.94	0					23	9	3	0	0	0	0.21174	1	12810	12810		72.879	72.879	1	2322500			26329	8722	17695	17757	26679	26679					0.038156361209985334
LVGRGTVKPA	10	Unmodified	_LVGRGTVKPA_					0	0	0		ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.2097473144531	3	333.209948	996.608014	0.25827	8.6057E-05	-0.97968	-0.00032644	-0.72142	-0.00024038	333.20966390908586	18.373	0.095774	18.373	18.304	18.399	0					7	4	2	0	0	0	0.60281	1	4566	4566		33.922	4.3709	1	37091			26330	10533	17696	17758	26680	26680					0.10957441951131841
LVGSKCTRTV	10	Unmodified	_LVGSKCTRTV_					0	0	0		HELZ2|p.E1544K|1|0.35|ENSG00000130589|chr20:63564192-63564192|C/T|missense_variant	HELZ2|p.E1544K|1|0.35|ENSG00000130589|chr20:63564192-63564192|C/T|missense_variant	HELZ2|p.E1544K|1|0.35|ENSG00000130589|chr20:63564192-63564192|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2984619140625	2	532.300059	1062.58556	0.36093	0.00019212	-2.1048	-0.0011204	-1.7439	-0.00092829	532.298706125215	26.359	0.40658	26.359	26.28	26.687	0					18	13	2	0	0	0	0.46128	1	8006	8006		49.536	3.5638	1	116500			26331	11181	17697	17759	26681	26681					0.05677474491199064
LVGSNSAAEL	10	Unmodified	_LVGSNSAAEL_					0	0	0		tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7530517578125	2	480.753464	959.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.271	1	22.271	21.771	22.771	0								0	0	0	0.3805	1	6528	6528		36.447	2.2742	1				26332	23048	17698	17760	26682	26682					0.011008733096218748
LVGTLAKL	8	Unmodified	_LVGTLAKL_					0	0	0		tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.77349853515625	2	407.773471	813.53239	3.0563	0.0012463	-2.9334	-0.0011962	0.12286	5.01E-05	407.7721641023954	35.105	0.26376	35.105	34.998	35.262	0					9	5	2	0	0	0	0.5676	1	13535	13535		53.351	0	1	442760			26333	22757	17699	17761	26683	26683					0.11816464770845414
LVGVRPAE	8	Unmodified	_LVGVRPAE_					0	0	0			REV__ENST00000394456.9_1_19:6393018-6393183:-|nuORF	REV__ENST00000394456.9_1_19:6393018-6393183:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.7502746582031	2	420.750527	839.486502	1.0428	0.00043878	-3.5008	-0.0014729	-2.4579	-0.0010342	420.7499221566196	22.228	0.5717	22.228	21.96	22.531	0					32	13	3	0	0	0	0.58597	1	7129	7129		51.335	5.3835	1	928280	+		26334	18864	17700	17762	26684	26684					0.06033819588606093
LVGVRPAE	8	Unmodified	_LVGVRPAE_					0	0	0			REV__ENST00000394456.9_1_19:6393018-6393183:-|nuORF	REV__ENST00000394456.9_1_19:6393018-6393183:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.75018310546875	2	420.750527	839.486502	-0.094294	-3.9674E-05	-0.28171	-0.00011853	-0.376	-0.0001582	420.75032481484027	22.081	0.46092	22.081	21.776	22.237	0					21	9	3	0	0	0	0.60719	1	7385	7385		47.916	0	1	537170	+		26335	18864	17700	17762	26685	26685					0.06033819588606093
LVHDCGAQ	8	Unmodified	_LVHDCGAQ_					0	0	0			REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF	REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.695068359375	2	421.694895	841.375237	-1.2238	-0.00051606	1.3403	0.00056518	0.11649	4.9123E-05	421.69540289875954	21.952	0.15775	21.952	21.889	22.047	0					9	5	2	0	0	0	0.66372	1	6393	6393		38.806	3.6054	1	89099	+		26336	12076	17701	17763	26686	26686					-0.0517956311097123
LVHHDLLYT	9	Unmodified	_LVHHDLLYT_					0	0	0			REV__ENST00000368990.7_2_10:124152762-124159877:+|nuORF	REV__ENST00000368990.7_2_10:124152762-124159877:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.5413818359375	3	370.869591	1109.58694	-0.27	-0.00010013	2.7204	0.0010089	2.4504	0.00090878	370.8695572868804	30.773	0.65026	30.773	30.393	31.043	0					30	13	4	0	0	0	0.5654	1	11496	11496		19.104	0.84144	1	447110	+		26337	18618	17702	17764	26687	26687					0.0365343185162601
LVHLEQAV	8	Unmodified	_LVHLEQAV_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.76385498046875	2	454.763635	907.512717	0.27588	0.00012546	0.079203	3.6018E-05	0.35508	0.00016148	454.76358352174816	35.957	0.2831	35.957	35.839	36.123	0					13	7	3	0	0	0	0.59773	1	13518	13518		49.442	5.3247	1	138200			26338	1035	17703	17765	26688	26688					0.055260887600866226
LVHLGYLK	8	Unmodified	_LVHLGYLK_					0	0	0		ENST00000383314.6_1_18:13762966-13763026:+|nuORF	ENST00000383314.6_1_18:13762966-13763026:+|nuORF	ENST00000383314.6_1_18:13762966-13763026:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.79290771484375	2	471.792195	941.569838	0.19577	9.2363E-05	1.2013	0.00056675	1.397	0.00065911	471.79280550073196	25.708	0.21544	25.708	25.541	25.756	0					13	5	3	0	0	0	0.6282	1	8832	8832		44.531	2.1349	1	204790			26339	9129	17704	17766	26689	26689					0.0967155603646006
LVHLSTELK	9	Unmodified	_LVHLSTELK_					0	0	0			REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.3109741210938	2	520.310949	1038.60735	1.0137	0.00052744	-0.57594	-0.00029967	0.43777	0.00022778	520.3104862645815	35.716	0.89845	35.716	35.57	36.469	0					97	34	5	0	0	0	0.077948	1	12699	12699		85.359	15.732	1	19303000	+		26340	13048	17705	17767	26690	26690					0.08958602511415847
LVHLVMGLV	9	Unmodified	_LVHLVMGLV_					0	0	0			REV__ENST00000265362.8_1_7:83606489-83610685:-|nuORF	REV__ENST00000265362.8_1_7:83606489-83610685:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.80145263671875	2	490.801706	979.588859	-0.72764	-0.00035713	0.10074	4.9444E-05	-0.6269	-0.00030768	490.80190287379526	22.592	0.9115	22.592	22.384	23.295	0					48	18	4	0	0	0	0.25109	1	7821	7821		29.842	0	1	3334500	+		26341	18076	17706	17768	26691	26691					0.0982476933588714
LVHQVFSEK	9	Unmodified	_LVHQVFSEK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;FRMPD2|p.N579Tfs*84|1|0.32|ENSG00000170324|chr10:48206809-48206809|T/-|frameshift_variant;FRMPD2|p.K602Sfs*61|1|0.27|ENSG00000170324|chr10:48201377-48201377|T/-|frameshift_variant	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8013305664062	2	543.800749	1085.58694	0.39168	0.000213	0.90912	0.00049438	1.3008	0.00070737	543.8011742107059	22.881	0.15946	22.881	22.818	22.977	0					12	5	3	0	0	0	0.0406	1	6802	6802		98.629	27.334	1	454870			26342	6227	17707	17769	26692	26692					0.04757431851612637
LVHQVFSEK	9	Unmodified	_LVHQVFSEK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;FRMPD2|p.N579Tfs*84|1|0.32|ENSG00000170324|chr10:48206809-48206809|T/-|frameshift_variant;FRMPD2|p.K602Sfs*61|1|0.27|ENSG00000170324|chr10:48201377-48201377|T/-|frameshift_variant	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8014526367188	2	543.800749	1085.58694	1.9916	0.001083	-0.98254	-0.00053431	1.0091	0.00054873	543.8000905991759	23.058	0.2178	23.058	22.995	23.212	0					12	4	4	0	0	0	0.037569	1	7901	7901		101.6	24.827	1	1960000			26343	6227	17707	17769	26693	26693					0.04757431851612637
LVHQVFSEK	9	Unmodified	_LVHQVFSEK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;FRMPD2|p.N579Tfs*84|1|0.32|ENSG00000170324|chr10:48206809-48206809|T/-|frameshift_variant;FRMPD2|p.K602Sfs*61|1|0.27|ENSG00000170324|chr10:48201377-48201377|T/-|frameshift_variant	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8010864257812	2	543.800749	1085.58694	1.0869	0.00059107	-0.11433	-6.2171E-05	0.97259	0.00052889	543.8005195689569	22.937	0.22491	22.937	22.869	23.094	0					9	5	3	0	0	0	0.12239	1	6916	6916		74.255	24.813	1	296930			26344	6227	17707	17769	26694	26694					0.04757431851612637
LVHQVFSEK	9	Unmodified	_LVHQVFSEK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;FRMPD2|p.N579Tfs*84|1|0.32|ENSG00000170324|chr10:48206809-48206809|T/-|frameshift_variant;FRMPD2|p.K602Sfs*61|1|0.27|ENSG00000170324|chr10:48201377-48201377|T/-|frameshift_variant	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.80078125	2	543.800749	1085.58694	1.9925	0.0010835	-1.5991	-0.00086959	0.39344	0.00021395	543.7997330262416	23.077	0.36221	23.077	22.973	23.335	0					17	7	4	0	0	0	0.0792	1	7781	7781		84.916	23.944	1	3618700			26345	6227	17707	17769	26695	26695					0.04757431851612637
LVHSGVRMVS	10	Unmodified	_LVHSGVRMVS_					0	0	0			REV__ENST00000421896.1_1_6:7481658-7482147:-|nuORF	REV__ENST00000421896.1_1_6:7481658-7482147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.2027282714844	3	362.202576	1083.5859	-0.069533	-2.5185E-05	0.19852	7.1906E-05	0.12899	4.6721E-05	362.2027180851739	26.813	0.31414	26.813	26.705	27.019	0					9	6	2	0	0	0	0.65051	1	9532	9532		28.081	0.19925	1	510930	+		26346	19084	17708	17770	26696	26696					0.047448942110577264
LVHVDGHLY	9	Unmodified	_LVHVDGHLY_					0	0	0		ENST00000570285.1_1_13:76140977-76197422:+|nuORF;ENST00000563635.5_1_13:76123956-76287321:+|nuORF;ENSG00000118939|ENST00000377595|UCHL3	ENST00000570285.1_1_13:76140977-76197422:+|nuORF	ENST00000570285.1_1_13:76140977-76197422:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7798461914062	2	526.779816	1051.54508	1.2187	0.000642	-0.098388	-5.1829E-05	1.1203	0.00059017	527.2808065384135	28.366	0.27113	28.366	28.145	28.416	0					10	6	2	0	0	0	0.47428	1	9383	9383		35.201	0	1	80523			26347	3088	17709	17771	26697	26697					0.021368761630810695
LVHVDYGL	8	Unmodified	_LVHVDYGL_					0	0	0			REV__nc|ENSG00000106144|P42575-2|CASP2	REV__nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2508544921875	2	458.25036	914.486168	-0.98626	-0.00045195	0.70495	0.00032304	-0.28131	-0.00012891	458.25067400567565	35.303	0.2451	35.303	35.212	35.457	0					16	11	2	0	0	0	0.74117	1	11946	11946		28.254	0	1	76793	+		26348	13813	17710	17772	26698	26698					0.025503998687554486
LVIAAILRQ	9	Unmodified	_LVIAAILRQ_					0	0	0			REV__nc|ENSG00000104044|Q04671-2|OCA2	REV__nc|ENSG00000104044|Q04671-2|OCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.8322448730469	2	498.831852	995.649151	-0.67758	-0.000338	1.6633	0.00082973	0.98576	0.00049173	498.83271797826103	24.686	0.21776	24.686	24.528	24.746	0					8	4	2	0	0	0	0.47428	1	8684	8684		35.201	6.0512	1	112250	+		26349	13704	17711	17773	26699	26699					0.15115202990602938
LVICGHCIM	9	Unmodified	_LVICGHCIM_					0	0	0			REV__APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant	REV__APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7419738769531	2	494.742476	987.4704	-0.065931	-3.2619E-05	-1.9564	-0.00096793	-2.0224	-0.0010005	494.7419775806507	31.042	0.13366	31.042	30.961	31.095	0					7	5	2	0	0	0	0.43174	1	9951	9951		39.021	3.8208	1	52838	+		26350	12183	17712	17774	26700	26700					-0.02383669235814523
LVIDNGSGMCK	11	Unmodified	_LVIDNGSGMCK_					0	0	0		ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEF|p.R728Gfs*16|3|0.06|ENSG00000196604|chr2:130075290-130075290|G/-|frameshift_variant;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.776123046875	2	568.775559	1135.53657	1.7584	0.0010001	-1.2735	-0.00072434	0.48487	0.00027578	568.7752645574274	31.217	0.26111	31.217	31.124	31.385	0					13	6	3	0	0	0	0.16685	1	11333	11333		78.264	24.912	1	229300			26351	6995;7397;7857	17713	17775	26701	26701					-0.02578181860053519
LVIDNGSGMCK	11	Unmodified	_LVIDNGSGMCK_					0	0	0		ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEF|p.R728Gfs*16|3|0.06|ENSG00000196604|chr2:130075290-130075290|G/-|frameshift_variant;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.7760009765625	2	568.775559	1135.53657	1.9651	0.0011177	-2.1932	-0.0012475	-0.22809	-0.00012973	568.7746726489714	31.202	0.44702	31.202	31.077	31.524	0					27	10	4	0	0	0	0.29191	1	11747	11747		63.534	11.235	1	384570			26352	6995;7397;7857	17713	17775	26702	26702					-0.02578181860053519
LVIDNGSGMCK	11	Carbamidomethyl (C)	_LVIDNGSGMC(Carbamidomethyl (C))K_	LVIDNGSGMC(1)K		LVIDNGSGMC(120)K		0	1	0		ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEF|p.R728Gfs*16|3|0.06|ENSG00000196604|chr2:130075290-130075290|G/-|frameshift_variant;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.2863159179688	2	597.286291	1192.55803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.948	1	28.948	28.448	29.448	0								0	0	0	0.00066861	1	10665	10665		120.63	46.375	1				26353	6995;7397;7857	17713	17776	26703	26703	296				-0.030547968313385354
LVIDNGSGMCK	11	Carbamidomethyl (C)	_LVIDNGSGMC(Carbamidomethyl (C))K_	LVIDNGSGMC(1)K		LVIDNGSGMC(42)K		0	1	0		ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEF|p.R728Gfs*16|3|0.06|ENSG00000196604|chr2:130075290-130075290|G/-|frameshift_variant;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.2863159179688	2	597.286291	1192.55803	0.48711	0.00029094	1.4118	0.00084324	1.8989	0.0011342	597.2870560814778	28.723	0.13106	28.723	28.675	28.806	0					6	3	2	0	0	0	0.52595	1	9579	9579		42.338	13.168	1	41654			26354	6995;7397;7857	17713	17776	26704	26704	296				-0.030547968313385354
LVIDSAVEK	9	Unmodified	_LVIDSAVEK_					0	0	0		ENST00000472541.5_1_1:1235057-1244982:-|nuORF;nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2817077636719	2	487.281857	972.549162	0.72055	0.00035111	1.9701	0.00096	2.6907	0.0013111	487.2834134733573	30.616	0.49102	30.616	30.526	31.017	0					20	11	3	0	0	0	0.19605	1	11066	11066		62.107	6.6032	1	755350			26355	9865	17714	17777	26705	26705					0.0617892086613665
LVIDSAVEK	9	Unmodified	_LVIDSAVEK_					0	0	0		ENST00000472541.5_1_1:1235057-1244982:-|nuORF;nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2819519042969	2	487.281857	972.549162	-0.53773	-0.00026202	2.3941	0.0011666	1.8564	0.0009046	487.2829227514056	30.586	0.25702	30.586	30.49	30.747	0					12	5	3	0	0	0	0.10506	1	11331	11331		78.264	17.292	1	554300			26356	9865	17714	17777	26706	26706					0.0617892086613665
LVINCAGFGK	10	Unmodified	_LVINCAGFGK_					0	0	0		tr|U7T5C0|U7T5C0_FUSNUKetoacylreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00515PE=3SV=1	tr|U7T5C0|U7T5C0_FUSNUKetoacylreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00515PE=3SV=1	tr|U7T5C0|U7T5C0_FUSNUKetoacylreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00515PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.1874084472656	3	341.188155	1020.54264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.872	1	13.872	13.372	14.372	0								0	0	0	0.38797	1	2845	2845		25.126	3.1661	1				26357	23007	17715	17778	26707	26707					0.033187044337751104
LVIPFTIKK	9	Unmodified	_LVIPFTIKK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.5703125	3	353.570594	1057.68995	-0.051853	-1.8334E-05	-0.17852	-6.312E-05	-0.23037	-8.1454E-05	353.5705684058606	39.76	0.37763	39.76	39.656	40.034	0					17	8	3	0	0	0	0.1424	1	15724	15724		69.628	14.851	1	599510			26358	7403	17716	17779	26708	26708					0.16341544310216705
LVKALKSAAP	10	Unmodified	_LVKALKSAAP_					0	0	0		ENSG00000176771|ENST00000409261|NCKAP5;nc|ENSG00000176771|O14513-2|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	333.2182312011719	3	333.218332	996.633166	-0.70261	-0.00023412	0.501	0.00016694	-0.20162	-6.7183E-05	333.2184675334293	22.478	0.18853	22.478	22.376	22.565	0					8	5	2	0	0	0	0.6796	1	6621	6621		24.519	0.99649	1	113880			26359	6623	17717	17780	26709	26709					0.13471496753686552
LVKAQFIP	8	Unmodified	_LVKAQFIP_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2847595214844	2	458.286746	914.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.666	1	14.666	14.166	15.166	0								0	0	0	1.7419	1	3148	3148		35.201	0	1				26360	5812	17718	17781	26710	26710					0.09824153662179924
LVKAYTFIDQ	10	Unmodified	_LVKAYTFIDQ_					0	0	0			REV__ENSG00000155465|ENST00000674313|SLC7A7	REV__ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.329833984375	2	599.329339	1196.64412	0.20617	0.00012356	0.25092	0.00015038	0.45709	0.00027395	599.3294132192062	41.451	1.0797	41.451	40.794	41.874	0					66	40	2	0	0	0	0.66185	1	16293	16293		26.693	6.6961	1	126190	+		26361	15596	17719	17782	26711	26711					0.05366854337307814
LVKDGEHVI	9	Unmodified	_LVKDGEHVI_					0	0	0		ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2893371582031	2	505.287474	1008.5604	-0.31482	-0.00015908	3.9709	0.0020065	3.6561	0.0018474	505.289527286731	40.9	0.24012	40.9	40.762	41.002	0					6	3	2	0	0	0	0.39215	1	16245	16245		42.396	2.338	1	102900			26362	958	17720	17783	26712	26712					0.056457429602687625
LVKGRSPCAG	10	Unmodified	_LVKGRSPCAG_					0	0	0		nc|ENSG00000214279|Q4G0T1-2|SCART1;ENST00000482993.6_3_10:135267501-135271093:+|nuORF;nc|ENSG00000214279|Q4G0T1-3|SCART1;ENSG00000214279|ENST00000640237|SCART1	nc|ENSG00000214279|Q4G0T1-2|SCART1	nc|ENSG00000214279|Q4G0T1-2|SCART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.27130126953125	2	494.273844	986.533135	-2.5107	-0.001241	-2.2888	-0.0011313	-4.7995	-0.0023723	494.2725163738473	30.684	0.29247	30.684	30.572	30.864	0					18	8	3	0	0	0	0.54197	1	10469	10469		40.778	1.972	1	306390			26363	7810	17721	17784	26713	26713					0.039329361482373315
LVKINTGKA	9	Unmodified	_LVKINTGKA_					0	0	0		ENST00000417517.1_1_1:43357732-43357957:-|nuORF	ENST00000417517.1_1_1:43357732-43357957:-|nuORF	ENST00000417517.1_1_1:43357732-43357957:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.29998779296875	2	472.300384	942.586216	-1.4464	-0.00068313	0.85793	0.0004052	-0.58845	-0.00027793	472.30068866431776	23.002	0.10108	23.002	22.938	23.039	0					5	3	2	0	0	0	0.47038	1	6859	6859		35.618	0	1	63434			26364	9374	17722	17785	26714	26714					0.11262637202571568
LVKLSRVTE	9	Unmodified	_LVKLSRVTE_					0	0	0			REV__ENSG00000196431|ENST00000354760|CRYBA4	REV__ENSG00000196431|ENST00000354760|CRYBA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8248291015625	2	522.824224	1043.63389	1.0924	0.00057111	-0.56268	-0.00029418	0.52967	0.00027692	522.8240051194051	33.78	0.29227	33.78	33.679	33.972	0					17	8	3	0	0	0	0.41113	1	11883	11883		40.778	2.0246	1	221160	+		26365	17254	17723	17786	26715	26715					0.1138229140274234
LVKPDNFVE	9	Unmodified	_LVKPDNFVE_					0	0	0			REV__LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	REV__LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7882080078125	2	530.787307	1059.56006	3.4306	0.0018209	-2.8764	-0.0015267	0.55423	0.00029418	530.7861437653563	45.387	0.14585	45.387	45.298	45.444	0					15	6	3	0	0	0	0.35021	1	18162	18162		45.972	0.020292	1	128290	+		26366	14827	17724	17787	26716	26716					0.03266323240427482
LVKPNRNLQ	9	Unmodified	_LVKPNRNLQ_					0	0	0		ENST00000423620.6_1_8:95718261-95718693:+|nuORF	ENST00000423620.6_1_8:95718261-95718693:+|nuORF	ENST00000423620.6_1_8:95718261-95718693:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.2193298339844	3	361.220735	1080.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.326	1	32.326	31.826	32.826	0								0	0	0	0.30504	1	11231	11231		34.173	1.3601	1				26367	9414	17725	17788	26717	26717					0.10328229354126961
LVKPRLLE	8	Unmodified	_LVKPRLLE_					0	0	0		ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000552879.5_1_12:49494935-49496886:-|nuORF;ENST00000552141.5_1_12:49495806-49497560:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	323.21478271484375	3	323.21481	966.622602	-0.66753	-0.00021576	0.32334	0.00010451	-0.34418	-0.00011125	323.2149504579617	33.541	0.22342	33.541	33.48	33.703	0					13	8	2	0	0	0	0.7126	1	11266	11266		31.955	1.4512	1	185930			26368	4340	17726	17789	26718	26718					0.13795514099263073
LVKSVQKVP	9	Unmodified	_LVKSVQKVP_					0	0	0			REV__ENST00000478311.1_1_2:27587269-27587801:-|nuORF	REV__ENST00000478311.1_1_2:27587269-27587801:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.2183837890625	3	333.218332	996.633166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.487	1	22.487	21.987	22.987	0								0	0	0	0.3368	1	6366	6366		27.882	1.1893	1		+		26369	19563	17727	17790	26719	26719					0.1347149675370929
LVLAHLFGRRY	11	Unmodified	_LVLAHLFGRRY_					0	0	0		DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	672.8998413085938	2	672.898589	1343.78262	2.4844	0.0016717	-0.5844	-0.00039324	1.9	0.0012785	672.8979989240316	53.155	0.17453	53.155	53.08	53.255	0					20	10	4	0	0	0	0.79725	1	20516	20516		15.642	0	1	366730			26370	765	17728	17791	26720	26720					0.12448442096319923
LVLAMALGW	9	Unmodified	_LVLAMALGW_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2814636230469	2	487.280606	972.546659	0.44181	0.00021528	1.4529	0.00070798	1.8947	0.00092326	487.2815040982554	30.361	0.15543	30.361	30.302	30.457	0					5	3	2	0	0	0	0.31222	1	10343	10343		49.211	4.6797	1	72436			26371	6025	17729	17792	26721	26721					0.05928793927489551
LVLCTFAPQ	9	Unmodified	_LVLCTFAPQ_					0	0	0			REV__F2RL3|p.A249V|1|0.56|ENSG00000127533|chr19:16890209-16890209|C/T|missense_variant	REV__F2RL3|p.A249V|1|0.56|ENSG00000127533|chr19:16890209-16890209|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.26898193359375	2	496.267696	990.520839	-0.76536	-0.00037982	3.3317	0.0016534	2.5664	0.0012736	496.2690718464254	34.204	0.13673	34.204	34.121	34.258	0					8	3	3	0	0	0	0.37197	1	13176	13176		44.117	0	1	107190	+		26372	20653	17730	17793	26722	26722					0.025198996851941047
LVLEGFASLEP	11	Unmodified	_LVLEGFASLEP_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	587.82275390625	2	587.821347	1173.62814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.864	1	30.864	30.364	31.364	0								0	0	0	0.37939	1	9874	9874		47.657	12.505	1		+		26373	13432	17731	17794	26723	26723					0.0482714810041216
LVLHCKECK	9	Unmodified	_LVLHCKECK_					0	0	0			REV__nc|ENSG00000131323|Q13114-2|TRAF3	REV__nc|ENSG00000131323|Q13114-2|TRAF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.1925354003906	3	358.192912	1071.55691	1.4323	0.00051304	-2.2059	-0.00079014	-0.7736	-0.0002771	358.19204892366616	15.377	0.16168	15.377	15.322	15.484	0					7	3	3	0	0	0	0.41354	1	4206	4206		39.253	10.083	1	406580	+		26374	14616	17732	17795	26724	26724					0.023990335904045423
LVLHSLEK	8	Unmodified	_LVLHSLEK_					0	0	0		ENST00000505284.5_1_4:128861113-128864984:-|nuORF	ENST00000505284.5_1_4:128861113-128864984:-|nuORF	ENST00000505284.5_1_4:128861113-128864984:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7870788574219	2	469.78711	937.559667	-1.2265	-0.00057621	1.4449	0.0006788	0.21838	0.00010259	469.78763095951973	36.926	0.19565	36.926	36.852	37.048	0					15	10	2	0	0	0	0.34985	1	12489	12489		76.847	5.4687	1	92466			26375	10180	17733	17796	26725	26725					0.08838948311222339
LVLIPRNA	8	Unmodified	_LVLIPRNA_					0	0	0			REV__CON__P41361	REV__CON__P41361	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.28997802734375	2	448.28982	894.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.341	1	37.341	36.841	37.841	0								0	0	0	1.7419	1	12233	12233		28.254	2.8041	1		+	+	26376	12596	17734	17797	26726	26726					0.11358671893697192
LVLKDKVK	8	Unmodified	_LVLKDKVK_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.8205871582031	2	471.820953	941.627353	-1.413	-0.00066671	0.94404	0.00044542	-0.46901	-0.00022129	471.82129137756533	22.072	0.12965	22.072	21.978	22.108	0					9	4	3	0	0	0	0.58597	1	6432	6432		51.335	0.14276	1	320480			26377	3689	17735	17798	26727	26727					0.15420398242042666
LVLKNLTKG	9	Unmodified	_LVLKNLTKG_					0	0	0			REV__nc|ENSG00000116062|P52701-2|MSH6	REV__nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.21832275390625	3	329.218332	984.633166	0.5269	0.00017347	-0.56996	-0.00018764	-0.043057	-1.4175E-05	329.21815424937336	33.777	1.9224	33.777	33.609	35.531	0					103	50	4	0	0	0	0.55282	1	12734	12734		19.997	0	1	20855000	+		26378	20985	17736	17799	26728	26728					0.14023496753691234
LVLKNSCF	8	Unmodified	_LVLKNSCF_					0	0	0		nc|ENSG00000259956|Q8NDT2-2|RBM15B;RBM15B|p.S844Pfs*27|2|0.54|ENSG00000259956|chr3:51393922-51393922|G/-|frameshift_variant;ENSG00000259956|ENST00000563281|RBM15B	nc|ENSG00000259956|Q8NDT2-2|RBM15B	nc|ENSG00000259956|Q8NDT2-2|RBM15B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.2554931640625	2	462.254588	922.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.5	1	26.5	26	27	0								0	0	0	1.7419	1	8542	8542		31.955	1.4512	1				26379	8041	17737	17800	26729	26729					0.030276305137249437
LVLLDMPLKQ	10	Unmodified	_LVLLDMPLKQ_					0	0	0			REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.3543701171875	2	585.35176	1168.68897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.974	1	23.974	23.474	24.474	0								0	0	0	0.4201	1	7403	7403		15.642	1.5047	1		+		26380	16074	17738	17801	26730	26730					0.11136961879014962
LVLLLGRMK	9	Unmodified	_LVLLLGRMK_					0	0	0			REV__ENST00000287322.4_2_8:38066567-38066711:+|nuORF	REV__ENST00000287322.4_2_8:38066567-38066711:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.23052978515625	3	348.231695	1041.67326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.025	1	38.025	37.525	38.525	0								0	0	0	0.23459	1	14440	14440		45.952	16.802	1		+		26381	18146	17739	17802	26731	26731					0.15408720152640853
LVLLNPEKY	9	Unmodified	_LVLLNPEKY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ENST00000508684.5_1_4:2900928-2901297:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.821533203125	2	544.82115	1087.62775	1.9635	0.0010698	-1.0867	-0.00059204	0.87683	0.00047772	544.8204876436351	43.768	0.2472	43.768	43.661	43.909	0					18	7	4	0	0	0	0.25716	1	17521	17521		54.776	5.3348	1	595030			26382	11444	17740	17803	26732	26732					0.08743773171249813
LVLMVIVLQ	9	Oxidation (M)	_LVLM(Oxidation (M))VIVLQ_		LVLM(1)VIVLQ		LVLM(49)VIVLQ	0	0	1		ENST00000422647.5_1_7:99156430-99158253:+|nuORF	ENST00000422647.5_1_7:99156430-99158253:+|nuORF	ENST00000422647.5_1_7:99156430-99158253:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.55706787109375	3	348.555956	1042.64604	3.0337	0.0010574	0.23239	8.1002E-05	3.2661	0.0011384	348.555997012018	16.274	0.41767	16.274	16.114	16.532	0					17	8	3	0	0	0	0.30951	1	4481	4481		49.442	49.442	1	5787700			26383	9408	17741	17804	26733	26733		378			0.12642191821578308
LVLNCSTK	8	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))LVLNC(Carbamidomethyl (C))STK_	LVLNC(1)STK		LVLNC(41)STK		1	1	0		ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7599792480469	2	488.760235	975.505917	-1.2496	-0.00061078	0.84108	0.00041109	-0.40856	-0.00019969	488.7605948588501	38.291	0.14146	38.291	38.242	38.383	0					12	7	2	0	0	0	0.65276	1	12920	12920		40.573	6.4001	1	73395			26384	7665	17742	17805	26734	26734	329				0.01718407817213574
LVLNSGLIA	9	Unmodified	_LVLNSGLIA_					0	0	0			REV__ENSG00000197496|ENST00000359271|SLC2A10	REV__ENSG00000197496|ENST00000359271|SLC2A10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.28131103515625	2	450.28166	898.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.164	1	41.164	40.664	41.664	0								0	0	0	0.29774	1	14537	14537		35.618	1.4457	1		+		26385	17339	17743	17806	26735	26735					0.09543545936946884
LVLPKIFKT	9	Unmodified	_LVLPKIFKT_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|276|2|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|276|2|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|276|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.5704650878906	3	353.570594	1057.68995	0.70857	0.00025053	-0.72366	-0.00025587	-0.015094	-5.3368E-06	353.5702963013129	39.883	0.15203	39.883	39.796	39.948	0					9	5	2	0	0	0	0.25716	1	15177	15177		54.776	1.8396	1	142770			26386	11192	17744	17807	26736	26736					0.16341544310216705
LVLRTTST	8	Unmodified	_LVLRTTST_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.7684631347656	2	445.768917	889.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.963	1	12.963	12.463	13.463	0								0	0	0	1.7419	1	2891	2891		8.8223	0	1				26387	929	17745	17808	26737	26737					0.07410071414506092
LVLSHKEL	8	Unmodified	_LVLSHKEL_					0	0	0			REV__ENST00000439182.2_1_2:47762033-47762180:+|nuORF	REV__ENST00000439182.2_1_2:47762033-47762180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.78680419921875	2	469.78711	937.559667	0.012204	5.7333E-06	-0.4655	-0.00021869	-0.4533	-0.00021295	469.7868633831277	36.88	0.095406	36.88	36.831	36.927	0					7	4	2	0	0	0	0.67394	1	12096	12096		37.159	1.9584	1	43345	+		26388	19226	17746	17809	26738	26738					0.08838948311222339
LVLTKEKL	8	Unmodified	_LVLTKEKL_					0	0	0			REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.3125305175781	2	472.312961	942.611368	0.2125	0.00010037	-1.1178	-0.00052796	-0.90532	-0.00042759	472.3123087739457	37.464	0.18219	37.464	37.391	37.573	0					7	5	2	0	0	0	0.3961	1	14214	14214		71.296	0	1	100060	+		26389	20342	17747	17810	26739	26739					0.13776692005137647
LVLVMPLAV	9	Oxidation (M)	_LVLVM(Oxidation (M))PLAV_		LVLVM(1)PLAV		LVLVM(60)PLAV	0	0	1			REV__ENSG00000139626|ENST00000267082|ITGB7	REV__ENSG00000139626|ENST00000267082|ITGB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.8013610839844	2	485.803914	969.593275	-0.56113	-0.0002726	-4.404	-0.0021395	-4.9651	-0.0024121	485.8018162553323	34.689	1.9534	34.689	34.393	36.346	0					60	39	3	0	0	0	0.21025	1	13380	13380		60.404	10.868	1	943690	+		26390	15037	17748	17811	26740	26740		570			0.10726233758771286
LVLVNELGI	9	Unmodified	_LVLVNELGI_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.3034973144531	2	485.302593	968.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.376	1	34.376	33.876	34.876	0								0	0	0	0.28996	1	11234	11234		37.159	2.9866	1		+		26391	14075	17749	17812	26741	26741					0.10508101625475774
LVLYGERY	8	Unmodified	_LVLYGERY_					0	0	0		DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.75848388671875	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.452	1	36.452	35.952	36.952	0								0	0	0	1.7419	1	13751	13751		23.037	2.0898	1				26392	765	17750	17813	26742	26742					0.03362357931564475
LVMERNGG	8	Unmodified	_LVMERNGG_					0	0	0			REV__LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant	REV__LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2238464355469	2	438.22382	874.433086	0.30649	0.00013431	-1.0133	-0.00044406	-0.70684	-0.00030975	438.2235099193977	18.185	0.28934	18.185	17.969	18.259	0					11	6	2	0	0	0	0.64096	1	4657	4657		42.474	3.453	1	142630	+		26393	16273	17751	17814	26743	26743					-0.009153011855460136
LVMESALGKV	10	Unmodified	_LVMESALGKV_					0	0	0		tr|U7SKM3|U7SKM3_FUSNU3-hydroxyacyl-[acyl-carrier-protein]dehydrataseFabZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabZPE=3SV=1	tr|U7SKM3|U7SKM3_FUSNU3-hydroxyacyl-[acyl-carrier-protein]dehydrataseFabZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabZPE=3SV=1	tr|U7SKM3|U7SKM3_FUSNU3-hydroxyacyl-[acyl-carrier-protein]dehydrataseFabZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabZPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8045043945312	2	523.79936	1045.58417	0.031586	1.6545E-05	0.72071	0.00037751	0.7523	0.00039405	523.8000465135551	21.947	0.36214	21.947	21.692	22.054	0					11	7	2	0	0	0	0.26198	1	7274	7274		71.877	7.6702	1	204830			26394	22631	17752	17815	26744	26744					0.06319840402443333
LVMRRRGL	8	Unmodified	_LVMRRRGL_					0	0	0			REV__ENST00000393633.6_1_7:75045698-75045761:+|nuORF	REV__ENST00000393633.6_1_7:75045698-75045761:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.8115234375	2	500.81347	999.612388	-2.1233	-0.0010634	-1.9713	-0.00098724	-4.0946	-0.0020506	500.8125193567556	19.391	0.18797	19.391	19.262	19.45	0					9	4	3	0	0	0	0.68754	1	5268	5268		35.201	3.2459	1	237350	+		26395	18853	17753	17816	26745	26745					0.11256627893067161
LVMTHLILK	9	Unmodified	_LVMTHLILK_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;ENST00000535804.1_1_12:6637788-6638275:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.5596008300781	3	356.559701	1066.65727	-0.058136	-2.0729E-05	-0.50252	-0.00017918	-0.56065	-0.00019991	356.5597402613282	36.588	0.21494	36.588	36.529	36.744	0					5	4	2	0	0	0	0.4966	1	14245	14245		32.812	4.9302	1	104230			26396	1035	17754	17817	26746	26746					0.1266101391572647
LVNAETSKVI	10	Unmodified	_LVNAETSKVI_					0	0	0			REV__NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	REV__NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.54498291015625	3	358.544885	1072.61282	0.48485	0.00017384	-0.50379	-0.00018063	-0.018944	-6.7923E-06	358.5446999629219	24.212	0.23012	24.212	24.079	24.309	0					10	5	3	0	0	0	0.58189	1	8132	8132		36.447	5.8779	1	357400	+		26397	14416	17755	17818	26747	26747					0.07942281303257914
LVNAYHLKM	9	Oxidation (M)	_LVNAYHLKM(Oxidation (M))_		LVNAYHLKM(1)		LVNAYHLKM(74)	0	0	1		ENST00000398117.1_1_18:60792389-60792626:-|nuORF	ENST00000398117.1_1_18:60792389-60792626:-|nuORF	ENST00000398117.1_1_18:60792389-60792626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7962646484375	2	552.797152	1103.57975	0.62014	0.00034281	-1.1486	-0.00063493	-0.52844	-0.00029212	552.796674743243	37.375	0.14548	37.375	37.316	37.462	0					6	4	2	0	0	0	0.1236	1	14175	14175		73.975	21.038	1	80704			26398	9228	17756	17819	26748	26748		374			0.0321037597952909
LVNFKHLT	8	Unmodified	_LVNFKHLT_					0	0	0		tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.5272521972656	3	324.527277	970.560001	0.55808	0.00018111	-0.30059	-9.7549E-05	0.2575	8.3564E-05	324.527149935401	30.733	0.31757	30.733	30.617	30.935	0					16	7	3	0	0	0	0.77246	1	11520	11520		26.693	0	1	463390			26399	22947	17757	17820	26749	26749					0.0735436803107632
LVNGQHGCVKP	11	Unmodified	_LVNGQHGCVKP_					0	0	0			REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.3035278320312	2	576.303133	1150.59171	-0.31509	-0.00018159	0.071905	4.1439E-05	-0.24319	-0.00014015	576.3033337856715	12.922	0.54409	12.922	12.738	13.282	0					26	12	4	0	0	0	0.69004	1	3015	3015		19.104	11.299	1	639060	+		26400	13692	17758	17821	26750	26750					0.022439927227196677
LVNLFGCF	8	Carbamidomethyl (C)	_LVNLFGC(Carbamidomethyl (C))F_	LVNLFGC(1)F		LVNLFGC(55)F		0	1	0		ENST00000585839.5_1_19:14578398-14580330:+|nuORF;ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1	ENST00000585839.5_1_19:14578398-14580330:+|nuORF	ENST00000585839.5_1_19:14578398-14580330:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2470703125	2	485.246763	968.478974	0.66347	0.00032195	2.0734	0.0010061	2.7369	0.0013281	485.24673915658764	28.084	0.38808	28.084	27.833	28.221	0					24	9	5	0	0	0	0.55361	1	9881	9881		54.765	17.736	1	416580			26401	3302	17759	17822	26751	26751	128				-0.006526560033080386
LVNNPSMPTQ	10	Unmodified	_LVNNPSMPTQ_					0	0	0		SLITRK6|p.G568C|1|0.26|ENSG00000184564|chr13:85794807-85794807|C/A|missense_variant;SLITRK6|p.R599Hfs*12|1|0.16|ENSG00000184564|chr13:85794713-85794713|C/-|frameshift_variant;ENSG00000184564|ENST00000647374|SLITRK6	SLITRK6|p.G568C|1|0.26|ENSG00000184564|chr13:85794807-85794807|C/A|missense_variant	SLITRK6|p.G568C|1|0.26|ENSG00000184564|chr13:85794807-85794807|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7760620117188	2	550.773874	1099.53319	3.726	0.0020522	0.18553	0.00010218	3.9115	0.0021543	550.7740818470173	37.34	0.69987	37.34	37.137	37.837	0					46	14	5	0	0	0	0.2538	1	14576	14576		72.879	10.772	1	6344600			26402	7022	17760	17823	26752	26752					-0.012591086423981324
LVNSFQVG	8	Unmodified	_LVNSFQVG_					0	0	0			REV__tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	REV__tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2363586425781	2	432.23471	862.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.216	1	19.216	18.716	19.716	0								0	0	0	1.7419	1	5164	5164		24.203	2.2429	1		+		26403	21808	17761	17824	26753	26753					0.01813826834666088
LVPARPHWE	9	Unmodified	_LVPARPHWE_					0	0	0			REV__ENST00000465442.1_1_2:219130391-219131358:-|nuORF	REV__ENST00000465442.1_1_2:219130391-219131358:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8053588867188	2	552.801083	1103.58761	3.6563	0.0020212	3.8534	0.0021302	7.5097	0.0041514	552.8032101854144	37.049	0.50796	37.049	36.744	37.252	0					24	10	3	0	0	0	0.085655	1	14419	14419		56.721	9.0637	1	477610	+		26404	14498	17762	17825	26754	26754					0.03996271291316589
LVPASRVAL	9	Unmodified	_LVPASRVAL_					0	0	0		ENST00000492302.1_1_1:20966360-20975203:+|nuORF;PINK1|p.G513Vfs*5|1|0.29|ENSG00000158828|chr1:20650480-20650480|G/-|frameshift_variant;ENSG00000158828|ENST00000321556|PINK1	ENST00000492302.1_1_1:20966360-20975203:+|nuORF	ENST00000492302.1_1_1:20966360-20975203:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2948303222656	2	463.295102	924.575651	0.70576	0.00032698	-1.8209	-0.00084362	-1.1151	-0.00051664	463.2939527267202	33.101	0.6129	33.101	32.962	33.575	0					18	14	2	0	0	0	0.2873	1	12653	12653		51.335	8.9393	1	545400			26405	5285	17763	17826	26755	26755					0.11034654548143408
LVPDIGGEKI	10	Unmodified	_LVPDIGGEKI_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.8036499023438	2	520.802957	1039.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.883	1	26.883	26.383	27.383	0								0	0	0	0.085927	1	8222	8222		82.75	15.257	1		+		26406	15351	17764	17827	26756	26756					0.07314896274533567
LVPFCNLRK	9	Unmodified	_LVPFCNLRK_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF;REV__ENST00000492580.1_1_17:67008011-67013901:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3182373046875	2	545.315512	1088.61647	1.9529	0.001065	2.1381	0.0011659	4.091	0.0022309	545.3165640712562	50.123	0.49706	50.123	49.961	50.458	0					34	26	2	0	0	0	0.61124	1	19781	19781		19.36	1.0356	1	63511	+		26407	12030;12031	17765	17828	26757	26757					0.07570672596102668
LVPLSFQLSP	10	Unmodified	_LVPLSFQLSP_					0	0	0			REV__ENST00000512322.1_1_4:79570833-79602211:+|nuORF	REV__ENST00000512322.1_1_4:79570833-79602211:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.822509765625	2	550.82115	1099.62775	1.816	0.0010003	-1.0916	-0.00060127	0.72437	0.000399	550.8206048779351	39.743	2.9042	39.743	39.202	42.106	0					108	67	2	0	0	0	0.55603	1	15678	15678		39.253	2.8061	1	195410	+		26408	19884	17766	17829	26758	26758					0.08191773171233763
LVPPLANK	8	Unmodified	_LVPPLANK_					0	0	0			REV__LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	REV__LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.2710266113281	2	426.271096	850.527639	0.37133	0.00015829	-0.62404	-0.00026601	-0.25271	-0.00010772	426.27085572252264	29.498	0.25396	29.498	29.446	29.7	0					8	5	2	0	0	0	0.67475	1	10944	10944		37.028	1.8278	1	130490	+		26409	15598	17767	17830	26759	26759					0.09639580628083877
LVPPSPPLPLS	11	Unmodified	_LVPPSPPLPLS_					0	0	0			REV__ENSG00000162426|ENST00000471889|SLC45A1	REV__ENSG00000162426|ENST00000471889|SLC45A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.8358154296875	2	558.8368	1115.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.199	1	18.199	17.699	18.699	0								0	0	0	0.45674	1	4703	4703		19.104	0	1		+		26410	15812	17768	17831	26760	26760					0.10584346205314432
LVPQEQHPCE	10	Unmodified	_LVPQEQHPCE_					0	0	0			REV__ENST00000376804.2_2_1:11334013-11354999:+|nuORF	REV__ENST00000376804.2_2_1:11334013-11354999:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	590.279052734375	2	590.27678	1178.53901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.634	1	25.634	25.134	26.134	0								0	0	0	0.40862	1	8178	8178		27.882	2.3082	1		+		26411	18723	17769	17832	26761	26761					-0.043120101307295045
LVPTRELAL	9	Unmodified	_LVPTRELAL_					0	0	0		ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-4|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31	ENSG00000125485|ENST00000372159|DDX31	ENSG00000125485|ENST00000372159|DDX31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.31414794921875	2	506.313492	1010.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.035	1	38.035	37.535	38.535	0								0	0	0	0.17415	1	14444	14444		47.657	0	1				26412	3419	17770	17833	26762	26762					0.1075490637402936
LVPYVHLLQ	9	Unmodified	_LVPYVHLLQ_					0	0	0			REV__ENST00000512630.5_1_4:143007384-143094853:-|nuORF;REV__ENSG00000109452|ENST00000262992|INPP4B	REV__ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	361.2192687988281	3	361.218332	1080.63317	0.11325	4.0908E-05	2.5416	0.00091806	2.6548	0.00095896	361.21921596276724	32.288	0.11871	32.288	32.227	32.345	0					8	5	2	0	0	0	0.48389	1	10432	10432		34.173	2.6427	1	99912	+		26413	19886;13903	17771	17834	26763	26763					0.0960749675371062
LVQAQLRAV	9	Unmodified	_LVQAQLRAV_					0	0	0			REV__nc|ENSG00000173805|P54257-3|HAP1	REV__nc|ENSG00000173805|P54257-3|HAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.210205078125	3	333.209948	996.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.457	1	18.457	17.957	18.957	0								0	0	0	0.30504	1	4820	4820		34.173	3.8548	1		+		26414	16533	17772	17835	26764	26764					0.10957441951131841
LVQDGRMRHWR	11	Unmodified	_LVQDGRMRHWR_					0	0	0			REV__ENST00000477288.5_1_6:30882610-30884901:+|nuORF	REV__ENST00000477288.5_1_6:30882610-30884901:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2559814453125	3	485.257966	1452.75207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.085	1	17.085	16.585	17.585	0								0	0	0	0.4462	1	4006	4006		26.75	9.583	1		+		26415	14919	17773	17836	26765	26765					0.043803404395930556
LVQEANYL	8	Unmodified	_LVQEANYL_					0	0	0			REV__IFNGR2|p.C174Vfs*29|2|0.48|ENSG00000159128|chr21:33426985-33426985|T/-|frameshift_variant	REV__IFNGR2|p.C174Vfs*29|2|0.48|ENSG00000159128|chr21:33426985-33426985|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2513732910156	2	475.2531	948.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.215	1	30.215	29.715	30.715	0								0	0	0	1.7419	1	9604	9604		55.504	0	1		+		26416	15701	17774	17837	26766	26766					0.015340786605520407
LVQFGVIAVL	10	Unmodified	_LVQFGVIAVL_					0	0	0			REV__ENSG00000198113|ENST00000357503|TOR4A	REV__ENSG00000198113|ENST00000357503|TOR4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8330078125	2	529.83406	1057.65357	-1.1894	-0.0006302	-1.1404	-0.00060421	-2.3298	-0.0012344	529.8335579725427	17.466	0.070305	17.466	17.431	17.501	0					4	2	2	0	0	0	0.49411	1	4367	4367		33.516	0	1	83137	+		26417	17381	17775	17838	26767	26767					0.12704667413527204
LVQFQIVLE	9	Unmodified	_LVQFQIVLE_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.822021484375	2	544.82115	1087.62775	1.951	0.001063	-0.56846	-0.00030971	1.3826	0.00075325	544.8207433874024	43.847	0.17524	43.847	43.758	43.933	0					13	8	2	0	0	0	0.20551	1	17107	17107		60.972	0	1	85162	+		26418	15795	17776	17839	26768	26768					0.08743773171227076
LVQGSILKK	9	Unmodified	_LVQGSILKK_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.32373046875	2	493.32386	984.633166	-0.74608	-0.00036806	0.67771	0.00033433	-0.068375	-3.3731E-05	493.32413588710847	22.936	0.11615	22.936	22.878	22.995	0					6	2	3	0	0	0	0.032383	1	7845	7845		106.68	5.4304	1	502030			26419	3804	17777	17840	26769	26769					0.14023496753691234
LVQKAILQK	9	Unmodified	_LVQKAILQK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.84521484375	2	520.844959	1039.67537	0.70804	0.00036878	4.7785E-05	2.4888E-08	0.70809	0.0003688	520.844884227889	21.912	0.12365	21.912	21.83	21.954	0					5	3	2	0	0	0	0.071197	1	6118	6118		87.754	26.782	1	99806			26420	2999	17778	17841	26770	26770					0.15711472162070095
LVQKAILQK	9	Unmodified	_LVQKAILQK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.8451538085938	2	520.844959	1039.67537	0.071561	3.7272E-05	0.0061369	3.1964E-06	0.077698	4.0469E-05	520.8449721044466	22.246	0.14614	22.246	22.148	22.295	0					6	3	2	0	0	0	0.030949	1	7203	7203		108.09	28.375	1	749120			26421	2999	17778	17841	26771	26771					0.15711472162070095
LVQKAILQK	9	Unmodified	_LVQKAILQK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.8450927734375	2	520.844959	1039.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.008	1	22.008	21.508	22.508	0								0	0	0	0.014441	1	6483	6483		104.75	33.451	1				26422	2999	17778	17841	26772	26772					0.15711472162070095
LVQLKARVL	9	Unmodified	_LVQLKARVL_					0	0	0			REV__ENST00000470861.1_1_9:139571873-139581795:-|nuORF	REV__ENST00000470861.1_1_9:139571873-139581795:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	346.90185546875	3	347.237726	1038.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.084	1	36.084	35.584	36.584	0								0	0	0	0.30504	1	12896	12896		34.173	1.3601	1		+		26423	19476	17779	17842	26773	26773					0.17355178398975113
LVQLLAIPFH	10	Unmodified	_LVQLLAIPFH_					0	0	0			REV__ENST00000526701.5_1_11:8721552-8724378:-|nuORF	REV__ENST00000526701.5_1_11:8721552-8724378:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.8552856445312	2	575.852784	1149.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.095	1	19.095	18.595	19.595	0								0	0	0	0.4044	1	5110	5110		17.365	0	1		+		26424	20001	17780	17843	26774	26774					0.12215758679121791
LVQPRLIPVD	10	Unmodified	_LVQPRLIPVD_					0	0	0			REV__HEPACAM|p.S146L|1|0.47|ENSG00000165478|chr11:124924001-124924001|G/A|missense_variant	REV__HEPACAM|p.S146L|1|0.47|ENSG00000165478|chr11:124924001-124924001|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.90447998046875	3	383.904524	1148.69174	3.2239	0.0012377	-1.542	-0.00059198	1.6819	0.00064569	383.90322628262373	19.32	0.6602	19.32	18.963	19.623	0					43	13	6	0	0	0	0.64178	1	5935	5935		33.922	0	1	2037800	+		26425	20724	17781	17844	26775	26775					0.1233455332817357
LVQPVANVPA	10	Unmodified	_LVQPVANVPA_					0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.195	1	22.195	21.695	22.695	0								0	0	0	0.4201	1	7344	7344		28.081	5.5018	1				26426	11431	17782	17845	26776	26776					0.0781033333993264
LVQQIIFF	8	Unmodified	_LVQQIIFF_					0	0	0		ENST00000572785.1_1_15:74474685-74474796:-|nuORF;ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6	ENST00000572785.1_1_15:74474685-74474796:-|nuORF	ENST00000572785.1_1_15:74474685-74474796:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5344543457031	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.594	1	34.594	34.094	35.094	0								0	0	0	1.7419	1	11317	11317		25.45	11.996	1				26427	4204	17783	17846	26777	26777					0.08212422833662458
LVQYDLKNP	9	Unmodified	_LVQYDLKNP_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.3016967773438	2	545.300581	1088.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.954	1	29.954	29.454	30.454	0								0	0	0	0.27939	1	9498	9498		39.253	3.6345	1				26428	4567	17784	17847	26778	26778					0.0458601213174461
LVRELKET	8	Unmodified	_LVRELKET_					0	0	0			REV__ENST00000478924.1_1_X:106185151-106185807:-|nuORF	REV__ENST00000478924.1_1_X:106185151-106185807:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2952575683594	2	494.295299	986.576045	-0.45361	-0.00022422	-0.86396	-0.00042705	-1.3176	-0.00065127	494.2948647527654	40.286	0.22871	40.286	40.194	40.423	0					15	10	2	0	0	0	0.77246	1	15341	15341		24.203	0	1	147020	+		26429	14698	17785	17848	26779	26779					0.08222029477315118
LVRGATLDI	9	Unmodified	_LVRGATLDI_					0	0	0		ENST00000566882.5_1_15:43482236-43485079:+|nuORF;ENST00000564630.5_1_15:43478389-43485079:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF;ENST00000568936.1_1_15:43482236-43482350:+|nuORF	ENST00000566882.5_1_15:43482236-43485079:+|nuORF	ENST00000566882.5_1_15:43482236-43485079:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2896728515625	2	479.290017	956.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.65	1	14.65	14.15	15.15	0								0	0	0	0.28164	1	3208	3208		38.806	6.8513	1				26430	5953	17786	17849	26780	26780					0.0854604682289164
LVRIPRRRA	9	Unmodified	_LVRIPRRRA_					0	0	0			REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.5887145996094	3	379.587753	1135.74143	3.2423	0.0012308	-0.97838	-0.00037138	2.264	0.00085937	379.5873554668668	30.417	0.5474	30.417	30.115	30.663	0					26	11	3	0	0	0	0.61124	1	11273	11273		19.997	7.1851	1	1326400	+		26431	13391	17787	17850	26781	26781					0.17898725847499009
LVRRDSLL	8	Unmodified	_LVRRDSLL_					0	0	0			REV__ENSG00000182544|ENST00000329548|MFSD5	REV__ENSG00000182544|ENST00000329548|MFSD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.30224609375	2	486.303458	970.592364	-0.55087	-0.00026789	-2.7903	-0.0013569	-3.3412	-0.0016248	486.30193411499664	42.204	0.28688	42.204	42.036	42.323	0					13	7	3	0	0	0	0.58597	1	16837	16837		51.335	1.3109	1	49105	+		26432	16888	17788	17851	26782	26782					0.10589155434081476
LVRRMLML	8	Unmodified	_LVRRMLML_					0	0	0		ENST00000486402.1_1_X:41519640-41524682:-|nuORF;CASK|p.N757Tfs*40|1|0.18|ENSG00000147044|chrX:41534753-41534753|T/-|frameshift_variant;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK	ENST00000486402.1_1_X:41519640-41524682:-|nuORF	ENST00000486402.1_1_X:41519640-41524682:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.31640625	2	516.314457	1030.61436	1.4614	0.00075455	1.5344	0.00079225	2.9958	0.0015468	516.315208886934	42.323	0.21228	42.323	42.235	42.447	0					23	10	3	0	0	0	0.41952	1	16601	16601		46.766	2.6496	1	242470			26433	376	17789	17852	26783	26783					0.10027920586639993
LVRRNLCLC	9	Unmodified	_LVRRNLCLC_					0	0	0		ENST00000572473.1_1_17:79867048-79869264:-|nuORF;ENST00000331285.7_1_17:79867048-79869048:-|nuORF	ENST00000572473.1_1_17:79867048-79869264:-|nuORF	ENST00000572473.1_1_17:79867048-79869264:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3065795898438	2	545.304621	1088.59469	1.9491	0.0010628	1.3792	0.00075211	3.3283	0.0018149	545.305539964245	35.422	0.52375	35.422	35.113	35.637	0					34	10	5	0	0	0	0.39123	1	13640	13640		42.474	42.474	1	2538700			26434	8675	17790	17853	26784	26784					0.05393544575895248
LVRRYDVF	8	Unmodified	_LVRRYDVF_					0	0	0			REV__ENST00000466099.1_1_20:60768659-60775121:+|nuORF	REV__ENST00000466099.1_1_20:60768659-60775121:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.3047485351562	2	534.303458	1066.59236	2.273	0.0012144	-0.37161	-0.00019855	1.9013	0.0010159	534.3032731567586	33.744	0.35054	33.744	33.62	33.971	0					14	9	2	0	0	0	0.61938	1	12496	12496		45.952	1.8352	1	834360	+		26435	13589	17791	17854	26785	26785					0.061731554340894945
LVRSGCGPAL	10	Unmodified	_LVRSGCGPAL_					0	0	0			REV__ENST00000368192.8_1_1:157095491-157095569:-|nuORF	REV__ENST00000368192.8_1_1:157095491-157095569:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.76800537109375	2	486.768394	971.522236	0.7053	0.00034332	-1.6785	-0.00081704	-0.97321	-0.00047373	486.7677118246386	34.957	0.20868	34.957	34.878	35.087	0					14	5	4	0	0	0	0.28036	1	13059	13059		69.628	3.1983	1	712510	+		26436	18603	17792	17855	26786	26786					0.035335337739752504
LVSAERTEL	9	Unmodified	_LVSAERTEL_					0	0	0			REV__ENST00000489816.5_1_5:892252-892519:-|nuORF	REV__ENST00000489816.5_1_5:892252-892519:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2823181152344	2	509.282389	1016.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.438	1	24.438	23.938	24.938	0								0	0	0	0.046123	1	8228	8228		87.754	0	1		+		26437	19704	17793	17856	26787	26787					0.04261135235026359
LVSAERTEL	9	Unmodified	_LVSAERTEL_					0	0	0			REV__ENST00000489816.5_1_5:892252-892519:-|nuORF	REV__ENST00000489816.5_1_5:892252-892519:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2831115722656	2	509.282389	1016.55022	3.9141	0.0019934	-2.6366	-0.0013428	1.2775	0.00065061	509.28049556024814	24.193	0.11124	24.193	24.126	24.237	0					5	3	2	0	0	0	0.2873	1	7380	7380		51.335	5.3835	1	50696	+		26438	19704	17793	17856	26788	26788					0.04261135235026359
LVSAPIAVR	9	Unmodified	_LVSAPIAVR_					0	0	0			REV__NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	REV__NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.79632568359375	2	463.295102	924.575651	-0.44285	-0.00020517	0.16238	7.5228E-05	-0.28047	-0.00012994	463.29524012099836	32.858	0.28368	32.858	32.723	33.007	0					14	11	2	0	0	0	0.53083	1	10634	10634		29.15	0	1	71346	+		26439	14674	17794	17857	26789	26789					0.11034654548132039
LVSAYHNKY	9	Unmodified	_LVSAYHNKY_					0	0	0		tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.7831420898438	2	547.785099	1093.55564	0.42562	0.00023315	-3.0375	-0.0016639	-2.6119	-0.0014308	547.7833024341351	27.067	0.12219	27.067	27.017	27.139	0					7	4	2	0	0	0	0.16002	1	8585	8585		66.429	7.6473	1	48890			26440	22712	17795	17858	26790	26790					0.012608588174998658
LVSCKKDL	8	Unmodified	_LVSCKKDL_					0	0	0		ENSG00000182957|ENST00000382108|SPATA13;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13	ENSG00000182957|ENST00000382108|SPATA13	ENSG00000182957|ENST00000382108|SPATA13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25958251953125	2	453.259871	904.505189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.792	1	43.792	43.292	44.292	0								0	0	0	1.7419	1	17538	17538		55.504	2.1528	1				26441	6929	17796	17859	26791	26791					0.04911613168155782
LVSDLRNHPV	10	Unmodified	_LVSDLRNHPV_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.8825988769531	3	383.884012	1148.63021	-2.1638	-0.00083064	-1.491	-0.00057238	-3.6548	-0.001403	383.88332981572637	24.73	0.45918	24.73	24.626	25.085	0					19	10	2	0	0	0	0.68774	1	7783	7783		23.523	0.94304	1	130330			26442	1884	17797	17860	26792	26792					0.06183621628883884
LVSDQQFEGR	10	Unmodified	_LVSDQQFEGR_					0	0	0			REV__ENSG00000149571|ENST00000525144|KIRREL3	REV__ENSG00000149571|ENST00000525144|KIRREL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.5328369140625	3	393.531527	1177.57275	3.1812	0.0012519	0.24235	9.5371E-05	3.4235	0.0013473	393.5315497114233	28.932	0.41428	28.932	28.826	29.241	0					17	8	4	0	0	0	0.70967	1	10554	10554		20.837	2.3061	1	868840	+		26443	15428	17798	17861	26793	26793					-0.008932653673355162
LVSESSDVLPK	11	Unmodified	_LVSESSDVLPK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.3216552734375	2	587.321711	1172.62887	0.12038	7.0704E-05	-0.047783	-2.8064E-05	0.0726	4.264E-05	587.3216367899679	31.327	0.4574	31.327	31.033	31.49	0					28	11	3	0	0	0	0.0036452	1	11326	11326		128.6	48.89	1	489000		+	26444	11643	17799	17862	26794	26794					0.049459427494639385
LVSESSDVLPK	11	Unmodified	_LVSESSDVLPK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.3223876953125	2	587.321711	1172.62887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.038	1	31.038	30.538	31.538	0								0	0	0	0.40876	1	10250	10250		35.152	3.6222	1			+	26445	11643	17799	17862	26795	26795					0.049459427494639385
LVSESSDVLPK	11	Unmodified	_LVSESSDVLPK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3223266601562	2	587.321711	1172.62887	1.438	0.00084459	-1.0686	-0.00062759	0.36947	0.000217	587.3210796266425	31.263	0.5884	31.263	30.897	31.485	0					36	13	4	0	0	0	0.014531	1	11763	11763		122.94	63.008	1	617900		+	26446	11643	17799	17862	26796	26796					0.049459427494639385
LVSESSDVLPK	11	Unmodified	_LVSESSDVLPK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3213500976562	2	587.321711	1172.62887	-0.19479	-0.00011441	0.62535	0.00036728	0.43056	0.00025288	587.3221675043067	31.28	0.41601	31.28	30.965	31.381	0					24	9	3	0	0	0	0.12478	1	11693	11693		83.647	21.54	1	220490		+	26447	11643	17799	17862	26797	26797					0.049459427494639385
LVSFCHIL	8	Unmodified	_LVSFCHIL_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF;ENST00000375204.2_1_9:100053158-100058044:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2576599121094	2	466.257131	930.499709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.199	1	25.199	24.699	25.699	0								0	0	0	1.7419	1	7808	7808		44.531	2.1349	1				26448	9029	17800	17863	26798	26798					0.03167934376335779
LVSGTQVL	8	Unmodified	_LVSGTQVL_					0	0	0		PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant;PPP6R2|p.P703Lfs*29|2|0.3|ENSG00000100239|chr22:50438737-50438737|G/-|frameshift_variant;PPP6R2|p.H660Mfs*72|2|0.43|ENSG00000100239|chr22:50438607-50438607|C/-|frameshift_variant;PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant;PPP6R2|p.E897Rfs*10|1|0.37|ENSG00000100239|chr22:50443948-50443948|C/-|frameshift_variant;nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2	PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant	PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	408.7450256347656	2	408.744911	815.475269	-0.093689	-3.8295E-05	-0.31689	-0.00012953	-0.41058	-0.00016782	408.7447789532107	39.009	0.21761	39.009	38.908	39.126	0					19	11	2	0	0	0	0.32408	1	13916	13916		79.939	0	1	103430			26449	1987	17801	17864	26799	26799					0.060149974944692985
LVSGVLYYK	9	Unmodified	_LVSGVLYYK_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.3028564453125	2	521.302593	1040.59063	1.7319	0.00090284	-0.77986	-0.00040654	0.95203	0.0004963	521.3024031118089	36.681	0.1796	36.681	36.597	36.777	0					9	5	2	0	0	0	0.13267	1	14308	14308		71.877	2.2498	1	221010			26450	3713	17802	17865	26800	26800					0.0719610162545905
LVSGVLYYK	9	Unmodified	_LVSGVLYYK_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3032836914062	2	521.302593	1040.59063	3.3865	0.0017654	-2.7868	-0.0014528	0.59966	0.00031261	521.3011606547261	36.648	0.21591	36.648	36.545	36.761	0					10	4	3	0	0	0	0.30951	1	14280	14280		49.442	3.4693	1	290090			26451	3713	17802	17865	26801	26801					0.0719610162545905
LVSKTKPKP	9	Unmodified	_LVSKTKPKP_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.2182922363281	3	333.218332	996.633166	0.52109	0.00017364	-0.5328	-0.00017754	-0.011709	-3.9015E-06	333.2181439011422	22.799	0.25484	22.799	22.633	22.887	0					17	6	4	0	0	0	0.3269	1	7467	7467		47.96	3.5823	1	746160	+		26452	15511	17803	17866	26802	26802					0.1347149675369792
LVSKTKPKP	9	Unmodified	_LVSKTKPKP_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.2181701660156	3	333.218332	996.633166	0.53993	0.00017991	-0.5243	-0.00017471	0.015626	5.2068E-06	333.21813510661866	22.685	0.26082	22.685	22.584	22.845	0					15	5	4	0	0	0	0.51991	1	7703	7703		30.318	1.1477	1	804690	+		26453	15511	17803	17866	26803	26803					0.1347149675369792
LVSLDRGPR	9	Unmodified	_LVSLDRGPR_					0	0	0			REV__ENST00000488457.1_1_2:25600201-25602432:-|nuORF	REV__ENST00000488457.1_1_2:25600201-25602432:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.79632568359375	2	506.79854	1011.58253	-0.084014	-4.2578E-05	-3.6279	-0.0018386	-3.7119	-0.0018812	506.7968805756188	24.553	0.25544	24.553	24.361	24.616	0					9	7	2	0	0	0	0.5879	1	7248	7248		23.042	3.0457	1	41482	+		26454	19692	17804	17867	26804	26804					0.0771996742871579
LVSLSGSIIY	10	Unmodified	_LVSLSGSIIY_					0	0	0		ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.3067626953125	2	526.305332	1050.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.222	1	21.222	20.722	21.722	0								0	0	0	0.4201	1	5812	5812		17.365	0.89182	1				26455	6936	17805	17868	26805	26805					0.07283780417287744
LVSLTKQRH	9	Unmodified	_LVSLTKQRH_					0	0	0			REV__ENSG00000149577|ENST00000324225|SIDT2	REV__ENSG00000149577|ENST00000324225|SIDT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.3263549804688	2	541.327465	1080.64038	-1.4839	-0.00080326	-0.8977	-0.00048595	-2.3816	-0.0012892	541.3269538671819	32.31	0.22055	32.31	32.227	32.447	0					15	6	3	0	0	0	0.38666	1	11214	11214		27.882	0	1	345470	+		26456	15429	17806	17869	26806	26806					0.10328229354149698
LVSNKIEDPPT	11	Unmodified	_LVSNKIEDPPT_					0	0	0			REV__ENST00000553148.1_1_12:100711499-100717500:+|nuORF	REV__ENST00000553148.1_1_12:100711499-100717500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	606.8265380859375	2	606.82716	1211.63977	-0.54582	-0.00033122	-0.62234	-0.00037765	-1.1682	-0.00070887	606.8266888444434	48.946	0.20203	48.946	48.858	49.06	0					27	12	3	0	0	0	0.78104	1	17723	17723		19.104	0	1	207930	+		26457	20217	17807	17870	26807	26807					0.04241345123728024
LVSNYGKTL	9	Unmodified	_LVSNYGKTL_					0	0	0			REV__ENST00000512560.5_1_5:79279160-79279214:-|nuORF	REV__ENST00000512560.5_1_5:79279160-79279214:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7820739746094	2	497.782025	993.549496	-1.1162	-0.00055562	0.55645	0.00027699	-0.55975	-0.00027863	497.7823193422946	23.36	0.72785	23.36	22.847	23.574	0					71	24	5	0	0	0	0.4966	1	6874	6874		32.812	0	1	453990	+		26458	19885	17808	17871	26808	26808					0.052463405860066814
LVSPEQPPK	9	Unmodified	_LVSPEQPPK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.78173828125	2	497.782025	993.549496	-1.1162	-0.00055562	0.55645	0.00027699	-0.55975	-0.00027863	497.7823193422946	23.36	0.72785	23.36	22.847	23.574	0					71	24	5	0	0	0	0.19605	1	7028	7028		62.107	8.756	1	453990			26459	1630	17809	17872	26809	26809					0.05246340585995313
LVSPEQPPK	9	Unmodified	_LVSPEQPPK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.78179931640625	2	497.782025	993.549496	0.81162	0.00040401	-1.5271	-0.00076015	-0.71546	-0.00035614	497.781443907682	23.54	1.3145	23.54	22.6	23.915	0					74	26	6	0	0	0	0.25761	1	8166	8166		54.722	21.207	1	2473300			26460	1630	17809	17872	26810	26810					0.05246340585995313
LVSPEQPPK	9	Unmodified	_LVSPEQPPK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.78192138671875	2	497.782025	993.549496	1.0097	0.00050259	-1.3215	-0.00065783	-0.31187	-0.00015524	497.7813314888178	23.526	1.2102	23.526	22.521	23.732	0					42	24	2	0	0	0	0.11411	1	7954	7954		76.17	26.145	1	1750100			26461	1630	17809	17872	26811	26811					0.05246340585995313
LVSPSSGRPL	10	Unmodified	_LVSPSSGRPL_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7929992675781	2	506.792924	1011.57129	0.15038	7.621E-05	-0.19732	-0.0001	-0.046945	-2.3791E-05	506.7929399557138	15.156	0.30439	15.156	15.096	15.4	0					8	6	2	0	0	0	0.62235	1	4100	4100		31.53	1.2121	1	89207	+		26462	14224	17810	17873	26812	26812					0.06597145334569632
LVSRTALQ	8	Unmodified	_LVSRTALQ_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.26904296875	2	444.269084	886.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.413	1	19.413	18.913	19.913	0								0	0	0	1.7419	1	6132	6132		71.296	4.8664	1				26463	6139	17811	17874	26813	26813					0.0758149113436275
LVSSGGISVL	10	Unmodified	_LVSSGGISVL_					0	0	0			REV__ENST00000565573.1_1_16:30900076-30905983:+|nuORF	REV__ENST00000565573.1_1_16:30900076-30905983:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2760925292969	2	466.276575	930.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.115	1	36.115	35.615	36.615	0								0	0	0	0.35368	1	14043	14043		42.396	1.8235	1		+		26464	20336	17812	17875	26814	26814					0.07054938211717854
LVSSSVHSK	9	Unmodified	_LVSSSVHSK_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2643737792969	2	472.263999	942.513445	-0.74456	-0.00035163	-0.20998	-9.9167E-05	-0.95454	-0.0004508	472.26427712157636	15.03	0.063927	15.03	14.988	15.051	0					5	3	2	0	0	0	0.41113	1	3357	3357		40.778	6.6056	1	59938			26465	6776	17813	17876	26815	26815					0.039888834091470926
LVSSSVHSK	9	Unmodified	_LVSSSVHSK_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2637634277344	2	472.263999	942.513445	-0.7401	-0.00034952	-0.00048169	-2.2749E-07	-0.74058	-0.00034975	472.26407795322683	15.268	0.20417	15.268	15.212	15.417	0					5	4	2	0	0	0	0.22837	1	4147	4147		58.23	6.8945	1	494560			26466	6776	17813	17876	26816	26816					0.039888834091470926
LVSSTGAK	8	Unmodified	_LVSSTGAK_					0	0	0		SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant;SCNN1G|p.K626Qfs*23|1|0.1|ENSG00000166828|chr16:23215388-23215389|-/C|frameshift_variant;ENSG00000166828|ENST00000300061|SCNN1G	SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant	SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.7213134765625	2	381.721436	761.428318	0.4272	0.00016307	-0.4842	-0.00018483	-0.057003	-2.1759E-05	381.72122301937253	13.509	0.13815	13.509	13.419	13.557	0					8	3	3	0	0	0	0.49216	1	3296	3296		60.972	3.1607	1	969860			26467	5931	17814	17877	26817	26817					0.03806137943331578
LVSSTGAK	8	Unmodified	_LVSSTGAK_					0	0	0		SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant;SCNN1G|p.K626Qfs*23|1|0.1|ENSG00000166828|chr16:23215388-23215389|-/C|frameshift_variant;ENSG00000166828|ENST00000300061|SCNN1G	SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant	SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	381.72125244140625	2	381.721436	761.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.242	1	13.242	12.742	13.742	0								0	0	0	1.7419	1	2650	2650		30.504	1.3541	1				26468	5931	17814	17877	26818	26818					0.03806137943331578
LVSSTGAK	8	Unmodified	_LVSSTGAK_					0	0	0		SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant;SCNN1G|p.K626Qfs*23|1|0.1|ENSG00000166828|chr16:23215388-23215389|-/C|frameshift_variant;ENSG00000166828|ENST00000300061|SCNN1G	SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant	SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.721435546875	2	381.721436	761.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.475	1	13.475	12.975	13.975	0								0	0	0	1.7419	1	3136	3136		49.442	10.635	1				26469	5931	17814	17877	26819	26819					0.03806137943331578
LVSTLKHK	8	Unmodified	_LVSTLKHK_					0	0	0			REV__tr|U7T175|U7T175_FUSNUGlutathioneperoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00644PE=3SV=1	REV__tr|U7T175|U7T175_FUSNUGlutathioneperoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00644PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2947692871094	2	463.295102	924.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.001	1	33.001	32.501	33.501	0								0	0	0	1.7419	1	11052	11052		40.573	4.9543	1		+		26470	22074	17815	17878	26820	26820					0.11034654548132039
LVSTLYRY	8	Unmodified	_LVSTLYRY_					0	0	0		ENST00000380629.6_1_8:26270525-26270594:+|nuORF	ENST00000380629.6_1_8:26270525-26270594:+|nuORF	ENST00000380629.6_1_8:26270525-26270594:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.78240966796875	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.68	1	31.68	31.18	32.18	0								0	0	0	1.7419	1	10519	10519		53.351	10.487	1				26471	9097	17816	17879	26821	26821					0.04834644448601466
LVSTPVRTK	9	Unmodified	_LVSTPVRTK_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;ENST00000472189.1_1_17:15960700-15961247:-|nuORF;ENST00000464381.5_1_17:15935612-15961439:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.81060791015625	2	500.811116	999.60768	-0.046396	-2.3236E-05	-0.25709	-0.00012875	-0.30348	-0.00015199	500.81089637505255	19.365	0.15653	19.365	19.245	19.402	0					11	4	3	0	0	0	0.21263	1	4974	4974		60.118	6.7668	1	325680			26472	4422	17817	17880	26822	26822					0.10786022231275183
LVSTPVRTK	9	Unmodified	_LVSTPVRTK_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;ENST00000472189.1_1_17:15960700-15961247:-|nuORF;ENST00000464381.5_1_17:15935612-15961439:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.81097412109375	2	500.811116	999.60768	-0.13348	-6.6847E-05	-0.11931	-5.9751E-05	-0.25279	-0.0001266	500.8111062703509	19.655	0.27677	19.655	19.508	19.784	0					16	6	4	0	0	0	0.18416	1	5977	5977		63.534	10.182	1	1910900			26473	4422	17817	17880	26823	26823					0.10786022231275183
LVSTPVRTK	9	Unmodified	_LVSTPVRTK_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;ENST00000472189.1_1_17:15960700-15961247:-|nuORF;ENST00000464381.5_1_17:15935612-15961439:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.8111572265625	2	500.811116	999.60768	-1.0794	-0.00054056	0.30391	0.0001522	-0.77546	-0.00038836	500.811473073915	19.377	0.14815	19.377	19.265	19.413	0					7	4	2	0	0	0	0.50858	1	5213	5213		31.53	3.6476	1	94367			26474	4422	17817	17880	26824	26824					0.10786022231275183
LVSVQTLRPG	10	Unmodified	_LVSVQTLRPG_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.21710205078125	3	357.216991	1068.62914	-0.89286	-0.00031894	0.72444	0.00025878	-0.16841	-6.016E-05	357.2172645018876	22.911	0.29115	22.911	22.748	23.039	0					24	10	3	0	0	0	0.73274	1	6779	6779		16.007	0	1	369670	+		26475	13946	17818	17881	26825	26825					0.09757407259985484
LVSYSKKI	8	Unmodified	_LVSYSKKI_					0	0	0		ENST00000504323.5_1_5:145524050-145524254:-|nuORF	ENST00000504323.5_1_5:145524050-145524254:-|nuORF	ENST00000504323.5_1_5:145524050-145524254:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.288818359375	2	469.289485	936.564418	-0.66363	-0.00031144	0.16208	7.6062E-05	-0.50155	-0.00023537	469.28950236951744	29.786	0.66689	29.786	29.209	29.876	0					29	17	2	0	0	0	0.67394	1	10067	10067		37.159	2.9866	1	90359			26476	10170	17819	17882	26826	26826					0.09359832453992567
LVTAAAVDAG	10	Unmodified	_LVTAAAVDAG_					0	0	0			REV__nc|ENSG00000100626|Q8N428-2|GALNT16	REV__nc|ENSG00000100626|Q8N428-2|GALNT16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.24505615234375	2	444.245275	886.475997	0.69497	0.00030874	-0.48642	-0.00021609	0.20856	9.265E-05	444.24494850288556	19.179	0.26688	19.179	18.979	19.245	0					12	8	2	0	0	0	0.58896	1	4892	4892		35.618	1.4457	1	84734	+		26477	13567	17820	17883	26827	26827					0.028217921435157223
LVTEIQNK	8	Unmodified	_LVTEIQNK_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2750549316406	2	472.7742	943.533846	-0.52115	-0.00024639	0.067528	3.1926E-05	-0.45363	-0.00021446	472.77423492793184	30.15	0.75197	30.15	29.803	30.555	0					49	19	6	0	0	0	0.67394	1	10112	10112		37.159	1.5408	1	3890600	+		26478	21771	17821	17884	26828	26828					0.059820540689429436
LVTEPSGPK	9	Unmodified	_LVTEPSGPK_					0	0	0		ENST00000355300.6_1_15:77908241-77924773:-|nuORF	ENST00000355300.6_1_15:77908241-77924773:-|nuORF	ENST00000355300.6_1_15:77908241-77924773:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.26068115234375	2	464.260925	926.507297	-0.48282	-0.00022416	-0.094456	-4.3852E-05	-0.57728	-0.00026801	464.260747040818	21.798	0.26655	21.798	21.636	21.903	0					8	5	2	0	0	0	0.42902	1	7142	7142		39.253	2.0937	1	263060			26479	8795	17822	17885	26829	26829					0.041103651776211336
LVTGCAIW	8	Carbamidomethyl (C)	_LVTGC(Carbamidomethyl (C))AIW_	LVTGC(1)AIW		LVTGC(45)AIW		0	1	0			REV__ENST00000371157.7_1_X:123195083-123195134:+|nuORF	REV__ENST00000371157.7_1_X:123195083-123195134:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.24041748046875	2	460.238938	918.463324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.525	1	15.525	15.025	16.025	0								0	0	0	1.7419	1	4029	4029		44.531	7.5026	1		+		26480	18649	17823	17886	26830	26830	664				0.0008305747962822352
LVTHGYVVY	9	Unmodified	_LVTHGYVVY_					0	0	0			REV__ENSG00000157119|ENST00000287777|KLHL40	REV__ENSG00000157119|ENST00000287777|KLHL40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2845458984375	2	525.784567	1049.55458	1.7701	0.0009307	1.2166	0.00063966	2.9867	0.0015704	525.7851852763044	40.568	0.61785	40.568	40.34	40.958	0					53	21	4	0	0	0	0.49003	1	15913	15913		33.516	1.5607	1	1041400	+		26481	15650	17824	17887	26831	26831					0.03178644448621526
LVTLDNLIL	9	Unmodified	_LVTLDNLIL_					0	0	0		nc|ENSG00000262628|P47884|OR1D4;ENSG00000262628|ENST00000575751|OR1D5	nc|ENSG00000262628|P47884|OR1D4	nc|ENSG00000262628|P47884|OR1D4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.3132019042969	2	507.3157	1012.61685	-0.64335	-0.00032638	-4.2818	-0.0021722	-4.9252	-0.0024986	507.3136672643588	42.618	0.10523	42.618	42.566	42.672	0					9	6	2	0	0	0	0.36892	1	14033	14033		44.377	0	1	51408			26482	8057	17825	17888	26832	26832					0.11104370796954299
LVTPRSAP	8	Unmodified	_LVTPRSAP_					0	0	0		ENST00000466620.5_1_20:3653963-3654391:-|nuORF	ENST00000466620.5_1_20:3653963-3654391:-|nuORF	ENST00000466620.5_1_20:3653963-3654391:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.247802734375	2	420.750527	839.486502	1.0428	0.00043878	-3.5008	-0.0014729	-2.4579	-0.0010342	420.7499221566196	22.228	0.5717	22.228	21.96	22.531	0					32	13	3	0	0	0	0.60719	1	7278	7278		47.916	13.743	1	928280			26483	9788	17826	17889	26833	26833					0.06033819588606093
LVTQNHSL	8	Unmodified	_LVTQNHSL_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18;CCDC18|p.N601Kfs*13|1|0.35|ENSG00000122483|chr1:93216715-93216716|-/A|frameshift_variant;CCDC18|p.R233Kfs*3|1|0.07|ENSG00000122483|chr1:93193738-93193739|-/A|frameshift_variant;CCDC18|p.V259Wfs*15|1|0.43|ENSG00000122483|chr1:93201959-93201959|A/-|frameshift_variant	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.2510681152344	2	456.250892	910.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.391	1	17.391	16.891	17.891	0								0	0	0	1.7419	1	4326	4326		40.573	2.7611	1				26484	3266	17827	17890	26834	26834					0.028406142376638854
LVTSLLDR	8	Unmodified	_LVTSLLDR_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.77618408203125	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.697	1	20.697	20.197	21.197	0								0	0	0	1.7419	1	5869	5869		23.042	3.939	1		+		26485	16765	17828	17891	26835	26835					0.07778357931579194
LVTTIALVR	9	Unmodified	_LVTTIALVR_					0	0	0			REV__nc|ENSG00000163870|Q86W33-2|TPRA1	REV__nc|ENSG00000163870|Q86W33-2|TPRA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.2181701660156	3	329.218332	984.633166	0.0026	8.5596E-07	-0.46257	-0.00015229	-0.45997	-0.00015143	329.21821030825623	22.948	0.16787	22.948	22.839	23.007	0					6	3	2	0	0	0	0.61124	1	7723	7723		19.997	5.8596	1	127620	+		26486	15926	17829	17892	26836	26836					0.14023496753691234
LVTVQLVI	8	Unmodified	_LVTVQLVI_					0	0	0			REV__ENST00000331113.8_1_7:120381633-120387745:+|nuORF	REV__ENST00000331113.8_1_7:120381633-120387745:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.79425048828125	2	442.794404	883.574254	0.75131	0.00033267	-1.0242	-0.00045353	-0.27294	-0.00012086	442.7939846807886	39.692	0.23294	39.692	39.602	39.835	0					6	5	2	0	0	0	0.37378	1	15699	15699		73.975	2.679	1	71732	+		26487	18381	17830	17893	26837	26837					0.12781020459362935
LVVASIVRF	9	Unmodified	_LVVASIVRF_					0	0	0			REV__ABCB11|p.A1028V|1|0.54|ENSG00000073734|chr2:168932507-168932507|G/A|missense_variant	REV__ABCB11|p.A1028V|1|0.54|ENSG00000073734|chr2:168932507-168932507|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.31854248046875	2	502.318577	1002.6226	0.71015	0.00035672	-0.72326	-0.00036331	-0.013117	-6.5889E-06	502.3181488161352	32.102	0.17334	32.102	31.977	32.151	0					9	4	3	0	0	0	0.44593	1	11766	11766		38.806	2.3594	1	358880	+		26488	12033	17831	17894	26838	26838					0.12139514099271764
LVVAVGWFI	9	Unmodified	_LVVAVGWFI_					0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.3047790527344	2	502.302396	1002.59024	0.7088	0.00035603	3.7162	0.0018666	4.425	0.0022227	502.30413693926744	32.226	0.2138	32.226	32.139	32.353	0					11	5	3	0	0	0	0.21025	1	11819	11819		60.404	19.831	1	626980	+		26489	16954	17832	17895	26839	26839					0.08904726696277976
LVVDDHGVF	9	Unmodified	_LVVDDHGVF_					0	0	0			REV__ENST00000569549.5_1_16:74943656-74957850:-|nuORF	REV__ENST00000569549.5_1_16:74943656-74957850:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7584228515625	2	500.758549	999.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.444	1	35.444	34.944	35.944	0								0	0	0	0.14807	1	13292	13292		60.294	4.7898	1		+		26490	13664	17833	17896	26840	26840					0.00277481034856919
LVVDNGSGMCK	11	Carbamidomethyl (C)	_LVVDNGSGMC(Carbamidomethyl (C))K_	LVVDNGSGMC(1)K		LVVDNGSGMC(72)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.2786865234375	2	590.278466	1178.54238	-0.46981	-0.00027732	1.34	0.00079097	0.87018	0.00051365	590.2792759314682	25.547	0.16657	25.547	25.429	25.596	0					9	6	2	0	0	0	0.21704	1	7962	7962		72.243	27.866	1	88840			26491	1545	17834	17897	26841	26841	63				-0.039750833483822134
LVVGIDLKN	9	Unmodified	_LVVGIDLKN_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.8179931640625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.249	1	37.249	36.749	37.749	0								0	0	0	0.14517	1	14109	14109		60.972	7.6205	1				26492	1198	17835	17898	26842	26842					0.09987217482705546
LVVHPDLIES	10	Unmodified	_LVVHPDLIES_					0	0	0			REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.312744140625	2	561.313689	1120.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.36	1	33.36	32.86	33.86	0								0	0	0	0.3428	1	12762	12762		44.117	8.9648	1		+		26493	13880	17836	17899	26843	26843					0.05734281303239186
LVVKSFNFK	9	Unmodified	_LVVKSFNFK_					0	0	0			REV__ENSG00000268041|ENST00000597630|ERFL	REV__ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.3258056640625	2	541.32386	1080.63317	3.5316	0.0019117	-0.050487	-2.733E-05	3.4811	0.0018844	541.3239348118058	32.448	0.46788	32.448	32.338	32.806	0					28	9	4	0	0	0	0.18416	1	12244	12244		56.721	12.19	1	3917800	+		26494	17797	17837	17900	26844	26844					0.09607496753687883
LVVLKSWY	8	Unmodified	_LVVLKSWY_					0	0	0		MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant;ENSG00000172689|ENST00000308287|MS4A10	MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant	MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343017578125	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.701	1	28.701	28.201	29.201	0								0	0	0	1.7419	1	9278	9278		19.36	1.0979	1				26495	6374	17838	17901	26845	26845					0.0821242283365109
LVVLYQNAK	9	Unmodified	_LVVLYQNAK_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.8780822753906	3	349.878087	1046.61243	0.51073	0.00017869	-0.58513	-0.00020472	-0.074394	-2.6029E-05	349.8778789354203	29.498	0.25406	29.498	29.396	29.65	0					12	5	3	0	0	0	0.30268	1	10942	10942		47.657	0	1	339410			26496	6547	17839	17902	26846	26846					0.09098906374038052
LVVMFFYF	8	Oxidation (M)	_LVVM(Oxidation (M))FFYF_		LVVM(1)FFYF		LVVM(67)FFYF	0	0	1		ENST00000370272.8_1_1:93826667-93826868:+|nuORF	ENST00000370272.8_1_1:93826667-93826868:+|nuORF	ENST00000370272.8_1_1:93826667-93826868:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.27685546875	2	541.274989	1080.53543	3.5265	0.0019088	0.56395	0.00030525	4.0904	0.0022141	541.2750248322018	32.598	0.65921	32.598	32.387	33.046	0					31	13	3	0	0	0	0.42924	1	12296	12296		67.327	11.823	1	1472900			26497	8951	17840	17903	26847	26847		356			-0.001620281666646406
LVVNPNGK	8	Unmodified	_LVVNPNGK_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.7506408691406	2	420.750527	839.486502	3.3993	0.0014303	-3.6225	-0.0015242	-0.22325	-9.3934E-05	420.7489464190155	21.901	0.25247	21.901	21.715	21.968	0					10	7	2	0	0	0	0.64096	1	6360	6360		42.474	3.6683	1	60572	+		26498	17255	17841	17904	26848	26848					0.06033819588606093
LVVRCAGVLH	10	Unmodified	_LVVRCAGVLH_					0	0	0			REV__ENST00000236671.6_2_11:1774065-1774194:-|nuORF	REV__ENST00000236671.6_2_11:1774065-1774194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.8125610351562	2	533.813136	1065.61172	-0.47929	-0.00025585	-1.2617	-0.00067349	-1.7409	-0.00092934	533.8127264188512	30.639	0.21567	30.639	30.534	30.749	0					19	8	3	0	0	0	0.4943	1	10070	10070		45.952	10.751	1	231420	+		26499	17922	17842	17905	26849	26849					0.08153788453341804
LVVRCAGVLH	10	Unmodified	_LVVRCAGVLH_					0	0	0			REV__ENST00000236671.6_2_11:1774065-1774194:-|nuORF	REV__ENST00000236671.6_2_11:1774065-1774194:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.8125	2	533.813136	1065.61172	-1.3142	-0.00070151	0.050203	2.6799E-05	-1.264	-0.00067471	533.8133159848925	30.618	0.2314	30.618	30.533	30.764	0					14	6	3	0	0	0	0.15764	1	10452	10452		85.359	22.053	1	392090	+		26500	17922	17842	17905	26850	26850					0.08153788453341804
LVVRFYRN	8	Unmodified	_LVVRFYRN_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8121948242188	2	533.811451	1065.60835	1.7556	0.00093719	-0.6693	-0.00035728	1.0864	0.00057991	533.8113064356319	30.823	0.26902	30.823	30.68	30.949	0					16	6	4	0	0	0	0.49887	1	11551	11551		60.294	7.3573	1	1771000			26501	6989	17843	17906	26851	26851					0.07816861670994513
LVVRFYRN	8	Unmodified	_LVVRFYRN_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8123168945312	2	533.811451	1065.60835	1.8096	0.00096597	-0.20995	-0.00011207	1.5996	0.0008539	533.811463508492	30.772	0.31549	30.772	30.663	30.978	0					19	6	4	0	0	0	0.57802	1	11441	11441		52.299	6.3269	1	1990300			26502	6989	17843	17906	26852	26852					0.07816861670994513
LVVRYTPR	8	Unmodified	_LVVRYTPR_					0	0	0		nc|ENSG00000104863|Q9HAP6-2|LIN7B;ENST00000474252.1_1_19:49618516-49621276:+|nuORF;ENSG00000104863|ENST00000221459|LIN7B;ENST00000469137.5_1_19:49617849-49621627:+|nuORF	nc|ENSG00000104863|Q9HAP6-2|LIN7B	nc|ENSG00000104863|Q9HAP6-2|LIN7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.3046569824219	2	502.306001	1002.59745	-0.92614	-0.0004652	-1.5578	-0.00078251	-2.484	-0.0012477	502.304974216392	31.961	0.14347	31.961	31.909	32.052	0					9	5	2	0	0	0	0.66095	1	10640	10640		29.15	3.6994	1	123760			26503	2313	17844	17907	26853	26853					0.09625459296694316
LVVSDGEAGP	10	Unmodified	_LVVSDGEAGP_					0	0	0		FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1;FREM1|p.S1085Afs*5|1|0.39|ENSG00000164946|chr9:14806682-14806682|T/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.24005126953125	2	472.24019	942.465826	-2.4319	-0.0011485	4.1434	0.0019567	1.7115	0.00080824	472.24258766103486	22.123	0.22819	22.123	21.973	22.202	0					7	5	2	0	0	0	0.44469	1	6561	6561		51.335	10.557	1	99060			26504	5747	17845	17908	26854	26854					-0.007708155817113038
LVVTDGAALA	10	Unmodified	_LVVTDGAALA_					0	0	0			REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.268798828125	2	465.26875	928.522947	-0.68007	-0.00031641	0.83037	0.00038634	0.1503	6.9929E-05	465.2698724425418	27.753	0.46687	27.753	27.366	27.833	0					21	11	4	0	0	0	0.51121	1	9759	9759		44.117	8.4985	1	407640	+		26505	21709	17846	17909	26855	26855					0.05582651694658125
LVVVDSRGY	9	Unmodified	_LVVVDSRGY_					0	0	0			REV__RHOBTB2|p.H281Pfs*14|1|0.28|ENSG00000008853|chr8:23007083-23007084|-/C|frameshift_variant	REV__RHOBTB2|p.H281Pfs*14|1|0.28|ENSG00000008853|chr8:23007083-23007084|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.78118896484375	2	504.279649	1006.54475	-0.014938	-7.5329E-06	0.5692	0.00028704	0.55426	0.0002795	504.7812421691749	26.844	0.27528	26.844	26.653	26.928	0					9	6	2	0	0	0	0.54267	1	8715	8715		27.882	5.9224	1	38550	+		26506	12881	17847	17910	26856	26856					0.04173456443231771
LVVVSLSSIS	10	Unmodified	_LVVVSLSSIS_					0	0	0		SLFN14|p.R556I|1|0.25|ENSG00000236320|chr17:35552967-35552967|C/A|missense_variant	SLFN14|p.R556I|1|0.25|ENSG00000236320|chr17:35552967-35552967|C/A|missense_variant	SLFN14|p.R556I|1|0.25|ENSG00000236320|chr17:35552967-35552967|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.3055725097656	2	502.305332	1002.59611	0.4973	0.0002498	-0.91198	-0.00045809	-0.41467	-0.00020829	502.3048330979162	31.924	0.11683	31.924	31.876	31.993	0					8	4	2	0	0	0	0.63073	1	10296	10296		30.504	3.7075	1	123970			26507	22422	17848	17911	26857	26857					0.09491780417295104
LVVVSLSSIS	10	Unmodified	_LVVVSLSSIS_					0	0	0		SLFN14|p.R556I|1|0.25|ENSG00000236320|chr17:35552967-35552967|C/A|missense_variant	SLFN14|p.R556I|1|0.25|ENSG00000236320|chr17:35552967-35552967|C/A|missense_variant	SLFN14|p.R556I|1|0.25|ENSG00000236320|chr17:35552967-35552967|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3050231933594	2	502.305332	1002.59611	-0.52104	-0.00026172	-0.16311	-8.193E-05	-0.68415	-0.00034365	502.3052813743571	32.178	0.26989	32.178	32.017	32.287	0					10	5	3	0	0	0	0.4943	1	12116	12116		45.952	45.952	1	425010			26508	22422	17848	17911	26858	26858					0.09491780417295104
LVVVTVPDN	9	Unmodified	_LVVVTVPDN_					0	0	0			REV__ENSG00000163563|ENST00000368141|MNDA	REV__ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2751770019531	2	478.276575	954.538597	-0.65344	-0.00031252	-0.84322	-0.00040329	-1.4967	-0.00071582	478.2762666830672	32.132	0.32105	32.132	32.017	32.338	0					15	6	3	0	0	0	0.16002	1	12071	12071		66.429	9.7082	1	382650	+		26509	15894	17849	17912	26859	26859					0.0595093821170849
LVWTLSPLF	9	Unmodified	_LVWTLSPLF_					0	0	0		ENST00000589882.1_1_6:41248622-41249060:-|nuORF;nc|ENSG00000124731|Q9NP99-3|TREM1	ENST00000589882.1_1_6:41248622-41249060:-|nuORF	ENST00000589882.1_1_6:41248622-41249060:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3109741210938	2	538.312961	1074.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.019	1	33.019	32.519	33.519	0								0	0	0	0.30835	1	11060	11060		33.516	0.70317	1				26510	10942	17850	17913	26860	26860					0.07704692005131619
LVYKYIVQK	9	Unmodified	_LVYKYIVQK_					0	0	0		ENST00000481915.5_1_3:32574447-32611850:-|nuORF;DYNC1LI1|p.I430Nfs*2|1|0.3|ENSG00000144635|chr3:32529557-32529558|-/T|frameshift_variant;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.2373352050781	3	385.237504	1152.69068	-0.61126	-0.00023548	-0.98297	-0.00037868	-1.5942	-0.00061416	385.23771282992595	29.068	0.31562	29.068	28.959	29.274	0					18	6	4	0	0	0	0.19605	1	10596	10596		62.107	15.651	1	346500			26511	861	17851	17914	26861	26861					0.12044338959253764
LVYTIEQPSN	10	Unmodified	_LVYTIEQPSN_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant;ENST00000567704.5_1_15:78194581-78196635:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	582.298583984375	2	582.300778	1162.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.385	1	19.385	18.885	19.885	0								0	0	0	0.41967	1	5005	5005		24.519	1.9395	1				26512	699	17852	17915	26862	26862					0.012213870609684818
LWAEKNLK	8	Unmodified	_LWAEKNLK_					0	0	0		TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant	TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant	TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.291748046875	2	501.292559	1000.57057	1.1203	0.00056158	-2.0583	-0.0010318	-0.93799	-0.00047021	501.29152269011666	37.936	0.57611	37.936	37.642	38.218	0					18	12	3	0	0	0	0.46905	1	14867	14867		63.306	8.53	1	697210			26513	22515	17853	17916	26863	26863					0.07030350685511166
LWAIMIKLV	9	Unmodified	_LWAIMIKLV_					0	0	0			REV__ENST00000371221.3_1_10:97392751-97393321:-|nuORF	REV__ENST00000371221.3_1_10:97392751-97393321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8963928222656	3	362.896313	1085.66711	0.47862	0.00017369	-0.74092	-0.00026888	-0.26231	-9.5191E-05	362.8961802265234	17.339	0.13847	17.339	17.251	17.39	0					8	3	3	0	0	0	0.61124	1	4884	4884		20.947	5.6138	1	440520	+		26514	18651	17854	17917	26864	26864					0.12770201921080115
LWASRTRR	8	Unmodified	_LWASRTRR_					0	0	0			REV__nc|ENSG00000087494|P12272-2|PTHLH	REV__nc|ENSG00000087494|P12272-2|PTHLH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3040161132812	2	523.304324	1044.5941	1.1698	0.00061215	-0.38106	-0.00019941	0.78871	0.00041273	523.3040239397892	50.322	0.65429	50.322	49.91	50.564	0					65	40	2	0	0	0	0.65276	1	16491	16491		40.573	2.7611	1	65429	+		26515	13386	17855	17918	26865	26865					0.0735820924271593
LWAYVTIGE	9	Unmodified	_LWAYVTIGE_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6;ITIH6|p.Q800Rfs*102|1|0.21|ENSG00000102313|chrX:54757676-54757676|G/-|frameshift_variant	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2784423828125	2	526.276575	1050.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.694	1	18.694	18.194	19.194	0								0	0	0	0.37496	1	4929	4929		18.324	0.95945	1				26516	2165	17856	17919	26866	26866					0.015349382117165078
LWDPSRRR	8	Unmodified	_LWDPSRRR_					0	0	0		ZBTB7C|p.P321Lfs*18|4|0.42|ENSG00000184828|chr18:48040148-48040148|C/-|frameshift_variant	ZBTB7C|p.P321Lfs*18|4|0.42|ENSG00000184828|chr18:48040148-48040148|C/-|frameshift_variant	ZBTB7C|p.P321Lfs*18|4|0.42|ENSG00000184828|chr18:48040148-48040148|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.3005981445312	2	543.301781	1084.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.493	1	43.493	42.993	43.993	0								0	0	0	1.7419	1	16397	16397		15.642	0	1				26517	23129	17857	17920	26867	26867					0.050099053800977345
LWDRRKRK	8	Unmodified	_LWDRRKRK_					0	0	0			REV__KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant	REV__KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.3541259765625	2	579.354348	1156.69414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.694	1	17.694	17.194	18.194	0								0	0	0	1.7419	1	4466	4466		16.473	3.0191	1		+		26518	14907	17858	17921	26868	26868					0.12206446576487906
LWHFVASL	8	Unmodified	_LWHFVASL_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7682189941406	2	486.76872	971.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.7	1	34.7	34.2	35.2	0								0	0	0	1.7419	1	11359	11359		39.021	1.8624	1				26519	964	17859	17922	26869	26869					0.0359869648533504
LWHPQLGE	8	Unmodified	_LWHPQLGE_					0	0	0			REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.73736572265625	2	490.253434	978.492316	-0.54025	-0.00026486	-0.054107	-2.6526E-05	-0.59436	-0.00029139	490.25341557721595	28.818	0.71284	28.818	28.511	29.224	0					36	14	3	0	0	0	0.7126	1	10380	10380		31.955	1.4512	1	769440	+		26520	17808	17860	17923	26870	26870					0.002209181002854166
LWISFPLCTM	10	Oxidation (M)	_LWISFPLCTM(Oxidation (M))_		LWISFPLCTM(1)		LWISFPLCTM(41)	0	0	1		OR52N1|p.V158Rfs*27|1|0.09|ENSG00000181001|chr11:5788345-5788346|-/GCCATCT|frameshift_variant;ENSG00000181001|ENST00000641645|OR52N1	OR52N1|p.V158Rfs*27|1|0.09|ENSG00000181001|chr11:5788345-5788346|-/GCCATCT|frameshift_variant	OR52N1|p.V158Rfs*27|1|0.09|ENSG00000181001|chr11:5788345-5788346|-/GCCATCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.5367736816406	3	409.536456	1225.58754	-0.50595	-0.00020721	0.91634	0.00037527	0.41039	0.00016807	409.5368232074195	25.522	2.5147	25.522	25.364	27.878	0					71	48	3	0	0	0	0.536	1	8937	8937		41.427	6.2746	1	609600			26521	6830	17861	17924	26871	26871		278			-0.016232328152227637
LWKAAELVVA	10	Unmodified	_LWKAAELVVA_					0	0	0		ENST00000409197.5_1_2:172544266-172544377:+|nuORF	ENST00000409197.5_1_2:172544266-172544377:+|nuORF	ENST00000409197.5_1_2:172544266-172544377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.2204895019531	3	367.221853	1098.64373	0.081927	3.0086E-05	-3.0815	-0.0011316	-2.9996	-0.0011015	367.220731394137	33.469	0.095268	33.469	33.398	33.493	0					5	3	2	0	0	0	0.59277	1	10886	10886		35.152	0	1	64988			26522	9295	17862	17925	26872	26872					0.09835479408138781
LWKCKADK	8	Unmodified	_LWKCKADK_					0	0	0			REV__ENST00000529123.2_1_17:72199871-72200367:+|nuORF	REV__ENST00000529123.2_1_17:72199871-72200367:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2530822753906	2	496.273312	990.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.047	1	21.047	20.547	21.547	0								0	0	0	1.7419	1	6789	6789		45.952	3.5558	1		+		26523	20028	17863	17926	26873	26873					0.03642721779340263
LWKIFPVISDF	11	Unmodified	_LWKIFPVISDF_					0	0	0		ENST00000554399.1_1_14:52907387-53019203:-|nuORF	ENST00000554399.1_1_14:52907387-53019203:-|nuORF	ENST00000554399.1_1_14:52907387-53019203:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.9267272949219	3	455.591946	1363.75401	0.6318	0.00028784	0.25704	0.00011711	0.88884	0.00040495	455.926360394762	25.205	0.092495	25.205	25.161	25.254	0					4	2	2	0	0	0	0.79869	1	7565	7565		15.333	0	1	97911			26524	10646	17864	17927	26874	26874					0.08668279676521706
LWLFTRLN	8	Unmodified	_LWLFTRLN_					0	0	0			REV__MVK|p.R40W|1|0.07|ENSG00000110921|chr12:109576037-109576037|C/T|missense_variant	REV__MVK|p.R40W|1|0.07|ENSG00000110921|chr12:109576037-109576037|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8085327148438	2	531.808377	1061.6022	0.12244	6.5116E-05	0.59673	0.00031735	0.71918	0.00038246	531.8086676417721	34.311	1.3606	34.311	34.17	35.531	0					97	35	4	0	0	0	0.59411	1	13271	13271		50.025	0	1	2908200	+		26525	20903	17865	17928	26875	26875					0.0738634343947524
LWLGCRIY	8	Unmodified	_LWLGCRIY_					0	0	0			REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF	REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.28076171875	2	512.275855	1022.53716	0.0045554	2.3336E-06	1.8389	0.00094202	1.8434	0.00094435	512.2766241841472	42.97	0.16022	42.97	42.93	43.09	0					12	8	2	0	0	0	0.74117	1	16272	16272		28.254	1.4582	1	136670	+		26526	19525	17866	17929	26876	26876					0.026790256419531033
LWLLSPSRK	9	Unmodified	_LWLLSPSRK_					0	0	0		TET3|p.G1748Afs*106|2|0.28|ENSG00000187605|chr2:74102025-74102025|G/-|frameshift_variant	TET3|p.G1748Afs*106|2|0.28|ENSG00000187605|chr2:74102025-74102025|G/-|frameshift_variant	TET3|p.G1748Afs*106|2|0.28|ENSG00000187605|chr2:74102025-74102025|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.22454833984375	3	367.225598	1098.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.066	1	15.066	14.566	15.566	0								0	0	0	0.33029	1	3811	3811		29.17	3.1067	1				26527	22524	17867	17930	26877	26877					0.10958301502273571
LWLLVLCA	8	Unmodified	_LWLLVLCA_					0	0	0		DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant;ENST00000556502.1_1_14:60619584-60632027:-|nuORF;ENSG00000100612|ENST00000557185|DHRS7;DHRS7|p.D104Ifs*9|1|0.26|ENSG00000100612|chr14:60154043-60154043|T/-|frameshift_variant;ENST00000555171.1_1_14:60622706-60632135:-|nuORF	DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant	DHRS7|p.D149Ifs*2|1|0.07|ENSG00000100612|chr14:60153127-60153128|-/ATAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7773742675781	2	465.777699	929.540846	0.6739	0.00031389	-0.70775	-0.00032966	-0.033849	-1.5766E-05	465.7771462845974	47.342	1.1353	47.342	47.084	48.22	0					77	59	2	0	0	0	0.79462	1	18966	18966		16.705	16.705	1	135220			26528	780	17868	17931	26878	26878					0.07325695415806877
LWLLWPLWL	9	Unmodified	_LWLLWPLWL_					0	0	0		ENST00000257940.6_1_12:56515445-56515574:+|nuORF	ENST00000257940.6_1_12:56515445-56515574:+|nuORF	ENST00000257940.6_1_12:56515445-56515574:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.9148254394531	3	413.914472	1238.72159	1.0307	0.00042663	0.18385	7.6099E-05	1.2146	0.00050273	413.9145695222336	26.128	2.8574	26.128	26	28.857	0					136	69	4	0	0	0	0.59802	1	9783	9783		21.96	21.96	1	3161800			26529	8273	17869	17932	26879	26879					0.11177537064168064
LWLSESPVK	9	Unmodified	_LWLSESPVK_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7964477539062	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.052	1	34.052	33.552	34.552	0								0	0	0	0.28996	1	11466	11466		37.159	0.13063	1		+		26530	15347	17870	17933	26880	26880					0.05430913620079991
LWLVFAMKIEY	11	Unmodified	_LWLVFAMKIEY_					0	0	0			REV__nc|ENSG00000168476|Q9H6H4-2|REEP4	REV__nc|ENSG00000168476|Q9H6H4-2|REEP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	706.8876342773438	2	706.885967	1411.75738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.832	1	34.832	34.332	35.332	0								0	0	0	0.45614	1	11762	11762		24.519	1.9395	1		+		26531	16261	17871	17934	26881	26881					0.06797206458850269
LWNMGKLQ	8	Unmodified	_LWNMGKLQ_					0	0	0			REV__ENST00000561172.1_1_15:41361731-41364163:-|nuORF	REV__ENST00000561172.1_1_15:41361731-41364163:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.51409912109375	3	330.51275	988.516422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.689	1	15.689	15.189	16.189	0								0	0	0	1.7419	1	4105	4105		37.159	7.9891	1		+		26532	14531	17872	17935	26882	26882					0.02170435262303272
LWPKWITN	8	Unmodified	_LWPKWITN_					0	0	0			REV__ENSG00000205667|ENST00000381130|ARSH	REV__ENSG00000205667|ENST00000381130|ARSH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.19842529296875	3	353.19916	1056.57565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.777	1	43.777	43.277	44.277	0								0	0	0	1.7419	1	17531	17531		27.882	12.549	1		+		26533	17531	17873	17936	26883	26883					0.04962654548148748
LWPSLLHMH	9	Unmodified	_LWPSLLHMH_					0	0	0		ZNF443|p.F207L|1|0.53|ENSG00000180855|chr19:12431553-12431553|A/G|missense_variant	ZNF443|p.F207L|1|0.53|ENSG00000180855|chr19:12431553-12431553|A/G|missense_variant	ZNF443|p.F207L|1|0.53|ENSG00000180855|chr19:12431553-12431553|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.3027954101562	2	567.299862	1132.58517	0.73287	0.00041576	4.043	0.0022936	4.7759	0.0027094	567.3023978319499	25.48	0.11957	25.48	25.428	25.548	0					5	3	2	0	0	0	0.49003	1	8120	8120		33.516	8.9964	1	44003			26534	23154	17874	17937	26884	26884					0.02418099562032694
LWPWKQTQI	9	Unmodified	_LWPWKQTQI_					0	0	0		ENST00000311106.7_1_5:95735789-95743960:-|nuORF	ENST00000311106.7_1_5:95735789-95743960:-|nuORF	ENST00000311106.7_1_5:95735789-95743960:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	600.3306884765625	2	600.332216	1198.64988	-0.57644	-0.00034606	-2.6247	-0.0015757	-3.2011	-0.0019218	600.3305934762004	32.854	0.14752	32.854	32.794	32.942	0					7	5	2	0	0	0	0.40353	1	10999	10999		26.693	1.1189	1	87149			26535	8553	17875	17938	26885	26885					0.05849997639666071
LWQDLVAARRW	11	Unmodified	_LWQDLVAARRW_					0	0	0			REV__ENSG00000177854|ENST00000369982|TMEM187	REV__ENSG00000177854|ENST00000369982|TMEM187	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	707.391845703125	2	707.391128	1412.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.105	1	35.105	34.605	35.605	0								0	0	0	0.45674	1	11864	11864		23.523	0.94304	1		+		26536	16713	17876	17939	26886	26886					0.0778295022828388
LWQYCPFLLH	10	Unmodified	_LWQYCPFLLH_					0	0	0			REV__ENST00000571240.1_1_17:7942473-7945810:+|nuORF	REV__ENST00000571240.1_1_17:7942473-7945810:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	660.3378295898438	2	660.333901	1318.65325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.54	1	34.54	34.04	35.04	0								0	0	0	0.4201	1	11297	11297		16.473	0.83134	1		+		26537	16782	17877	17940	26887	26887					0.006669244220120163
LWRNALEA	8	Unmodified	_LWRNALEA_					0	0	0		ENSG00000156413|ENST00000318336|FUT6;ENSG00000171124|ENST00000303225|FUT3;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5	ENSG00000156413|ENST00000318336|FUT6	ENSG00000156413|ENST00000318336|FUT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7679138183594	2	486.766709	971.518865	2.5337	0.0012333	-0.81393	-0.00039619	1.7197	0.00083711	486.766297022716	34.905	0.51199	34.905	34.75	35.262	0					15	10	2	0	0	0	0.34985	1	13437	13437		76.847	8.3619	1	929340			26538	3639	17878	17941	26888	26888					0.03196606991616591
LWRSRVVPDRE	11	Unmodified	_LWRSRVVPDRE_					0	0	0		nc|ENSG00000137834|O43541-4|SMAD6;ENSG00000137834|ENST00000288840|SMAD6	nc|ENSG00000137834|O43541-4|SMAD6	nc|ENSG00000137834|O43541-4|SMAD6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	706.88720703125	2	706.891492	1411.76843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.905	1	33.905	33.405	34.405	0								0	0	0	0.45674	1	11063	11063		16.717	1.8525	1				26539	4201	17879	17942	26889	26889					0.07901744877381134
LWRSRVVPDRE	11	Unmodified	_LWRSRVVPDRE_					0	0	0		nc|ENSG00000137834|O43541-4|SMAD6;ENSG00000137834|ENST00000288840|SMAD6	nc|ENSG00000137834|O43541-4|SMAD6	nc|ENSG00000137834|O43541-4|SMAD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	707.391357421875	2	706.891492	1411.76843	-2.7156	-0.0019196	-0.48312	-0.00034151	-3.1987	-0.0022611	706.8909783978778	37.1	1.0151	37.1	36.408	37.423	0					44	28	2	0	0	0	0.77123	1	13961	13961		20.837	2.5751	1	110580			26540	4201	17879	17942	26890	26890					0.07901744877381134
LWRVPFATQ	9	Unmodified	_LWRVPFATQ_					0	0	0			REV__ENST00000432460.1_3_2:219523811-219524039:-|nuORF	REV__ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.54400634765625	3	373.209948	1116.60801	-1.0527	-0.00039289	0.57004	0.00021275	-0.48269	-0.00018015	373.21028321656485	22.075	1.6596	22.075	21.889	23.549	0					114	54	4	0	0	0	0.50858	1	6574	6574		25.126	3.4402	1	6157800	+		26541	19176	17880	17943	26891	26891					0.05437441951130495
LWSGKELL	8	Unmodified	_LWSGKELL_					0	0	0		ENST00000529143.1_1_8:146077992-146078037:-|nuORF	ENST00000529143.1_1_8:146077992-146078037:-|nuORF	ENST00000529143.1_1_8:146077992-146078037:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2753601074219	2	473.273835	944.533118	-0.58128	-0.0002751	-1.8651	-0.00088269	-2.4464	-0.0011578	473.272955315763	34.838	0.51038	34.838	34.635	35.145	0					18	10	3	0	0	0	0.63077	1	13337	13337		44.117	0	1	376910			26542	10408	17881	17944	26892	26892					0.05863259419891165
LWSLFVCL	8	Unmodified	_LWSLFVCL_					0	0	0		AluSx1_dup107630|chr19:41713933-41714240:+|1.182438838059655|0.1247445926159485|3.24|476.0|13|2|anti-sense	AluSx1_dup107630|chr19:41713933-41714240:+|1.182438838059655|0.1247445926159485|3.24|476.0|13|2|anti-sense	AluSx1_dup107630|chr19:41713933-41714240:+|1.182438838059655|0.1247445926159485|3.24|476.0|13|2|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.76580810546875	2	490.767332	979.52011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.221	1	38.221	37.721	38.721	0								0	0	0	1.7419	1	14514	14514		35.201	0	1				26543	132	17882	17945	26893	26893					0.02953105036147008
LWSRALCVQL	10	Unmodified	_LWSRALCVQL_					0	0	0		ENST00000606514.5_1_6:143754970-143755018:-|nuORF	ENST00000606514.5_1_6:143754970-143755018:-|nuORF	ENST00000606514.5_1_6:143754970-143755018:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.8907470703125	3	396.890109	1187.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.438	1	13.438	12.938	13.938	0								0	0	0	0.36846	1	3059	3059		40.058	0	1				26544	11080	17883	17946	26894	26894					0.06218040279259185
LWTKAEELV	9	Unmodified	_LWTKAEELV_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.8012084960938	2	544.802957	1087.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.552	1	35.552	35.052	36.052	0								0	0	0	0.23459	1	12672	12672		45.952	1.8352	1		+		26545	15771	17884	17947	26895	26895					0.05106896274492101
LWTPRPQGP	9	Unmodified	_LWTPRPQGP_					0	0	0			REV__ENST00000382368.7_2_7:5521153-5521363:-|nuORF	REV__ENST00000382368.7_2_7:5521153-5521363:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2894287109375	2	526.287808	1050.56106	0.10017	5.2718E-05	3.6067	0.0018982	3.7069	0.0019509	526.2894448603195	27.615	0.17634	27.615	27.529	27.706	0					9	4	3	0	0	0	0.50461	1	9679	9679		31.955	14.59	1	243090	+		26546	18797	17885	17948	26896	26896					0.03780582400008825
LWVDRGKKTYF	11	Unmodified	_LWVDRGKKTYF_					0	0	0		PIP5KL1|p.R192W|1|0.21|ENSG00000167103|chr9:127927317-127927317|G/A|missense_variant	PIP5KL1|p.R192W|1|0.21|ENSG00000167103|chr9:127927317-127927317|G/A|missense_variant	PIP5KL1|p.R192W|1|0.21|ENSG00000167103|chr9:127927317-127927317|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	706.8887329101562	2	706.887887	1411.76122	1.4098	0.00099654	0.36507	0.00025806	1.7748	0.0012546	706.8882852281416	37.052	1.1228	37.052	36.04	37.163	0					79	58	2	0	0	0	0.78104	1	12294	12294		19.104	0	1	114940			26547	11936	17886	17949	26897	26897					0.07181012276942056
LWVFLGATRC	10	Unmodified	_LWVFLGATRC_					0	0	0		ENST00000545132.5_1_1:53236700-53236742:+|nuORF	ENST00000545132.5_1_1:53236700-53236742:+|nuORF	ENST00000545132.5_1_1:53236700-53236742:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.3140258789062	2	583.312969	1164.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.38	1	29.38	28.88	29.88	0								0	0	0	0.37129	1	10872	10872		39.253	0	1				26548	10573	17887	17950	26898	26898					0.03566368733481795
LWVSLKLL	8	Unmodified	_LWVSLKLL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;DOCK5|p.S612Kfs*4|1|0.33|ENSG00000147459|chr8:25325472-25325473|-/C|frameshift_variant	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.3168640136719	2	486.318046	970.621539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.974	1	48.974	48.474	49.474	0								0	0	0	1.7419	1	14837	14837		12.959	0.75233	1				26549	4782	17888	17951	26899	26899					0.13505299730377374
LWVTKTRL	8	Unmodified	_LWVTKTRL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8130798339844	2	508.816202	1015.61785	-0.021175	-1.0774E-05	-0.097542	-4.9631E-05	-0.11872	-6.0405E-05	508.8161936961704	31.183	0.63039	31.183	30.982	31.613	0					42	15	4	0	0	0	0.67394	1	11498	11498		37.159	2.9866	1	1418700			26550	5743	17889	17952	26900	26900					0.11066629956508223
LYACIMVGTQ	10	Unmodified	_LYACIMVGTQ_					0	0	0			REV__PTEN|p.R130Q|1|0.72|ENSG00000171862|chr10:87933148-87933148|G/A|missense_variant	REV__PTEN|p.R130Q|1|0.72|ENSG00000171862|chr10:87933148-87933148|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.7675170898438	2	549.769745	1097.52494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.048	1	20.048	19.548	20.548	0								0	0	0	0.4201	1	5299	5299		19.997	6.2214	1		+		26551	21422	17890	17953	26901	26901					-0.019923788833693834
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2852783203125	2	549.284931	1096.55531	1.2633	0.00069391	-0.41857	-0.00022991	0.84473	0.000464	549.2846724295673	34.966	0.30657	34.966	34.872	35.179	0					30	13	4	0	0	0	0.018513	1	11462	11462		126.24	53.363	1	981190			26552	6821	17891	17954	26902	26902					0.010894390976773138
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2850341796875	2	549.284931	1096.55531	0.51799	0.00028452	0.21177	0.00011632	0.72976	0.00040085	549.2849925058107	35.226	0.68994	35.226	35.061	35.751	0					47	18	4	0	0	0	0.03454	1	13196	13196		114.89	45.267	1	5514000			26553	6821	17891	17954	26903	26903					0.010894390976773138
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2854614257812	2	549.284931	1096.55531	0.36075	0.00019816	0.5611	0.0003082	0.92185	0.00050636	549.2851807109879	35.043	0.40068	35.043	34.937	35.337	0					48	17	4	0	0	0	0.011271	1	11844	11844		138.06	52.902	1	1211200			26554	6821	17891	17954	26904	26904					0.010894390976773138
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.284912109375	2	549.284931	1096.55531	1.7361	0.0009536	-0.95336	-0.00052367	0.78272	0.00042994	549.2842533578772	35.218	0.79394	35.218	35.064	35.858	0					62	22	4	0	0	0	0.018513	1	13654	13654		126.24	54.365	1	10955000			26555	6821	17891	17954	26905	26905					0.010894390976773138
LYAFNVTVV	9	Unmodified	_LYAFNVTVV_					0	0	0		ENSG00000183960|ENST00000328405|KCNH8;ENST00000452398.5_1_3:19388190-19491848:+|nuORF;KCNH8|p.M380Wfs*9|1|0.44|ENSG00000183960|chr3:19395268-19395268|A/-|frameshift_variant;KCNH8|p.G414Afs*16|1|0.44|ENSG00000183960|chr3:19438222-19438222|G/-|frameshift_variant	ENSG00000183960|ENST00000328405|KCNH8	ENSG00000183960|ENST00000328405|KCNH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2858276367188	2	513.286943	1024.55933	-1.6599	-0.00085201	-1.5614	-0.00080146	-3.2213	-0.0016535	513.2864292345037	32.35	0.15165	32.35	32.265	32.417	0					6	4	2	0	0	0	0.37197	1	11233	11233		44.117	6.9577	1	66620			26556	6992	17892	17955	26906	26906					0.04803528591378381
LYAKSALLYG	10	Unmodified	_LYAKSALLYG_					0	0	0			REV__INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant	REV__INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8128662109375	2	549.813325	1097.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.178	1	28.178	27.678	28.678	0								0	0	0	0.3963	1	10296	10296		19.997	0	1		+		26557	13877	17893	17956	26907	26907					0.06719486654174034
LYAKYAQR	8	Unmodified	_LYAKYAQR_					0	0	0			REV__nc|ENSG00000142606|Q495T6-3|MMEL1	REV__nc|ENSG00000142606|Q495T6-3|MMEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7822265625	2	506.782359	1011.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.028	1	40.028	39.528	40.528	0								0	0	0	1.7419	1	14238	14238		37.028	0	1		+		26558	15154	17894	17957	26908	26908					0.04485180025699265
LYAMVTTML	9	Oxidation (M)	_LYAM(Oxidation (M))VTTML_		LYAM(0.991)VTTM(0.009)L		LYAM(20)VTTM(-20)L	0	0	1		ENSG00000168828|ENST00000377981|OR13J1	ENSG00000168828|ENST00000377981|OR13J1	ENSG00000168828|ENST00000377981|OR13J1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.513671875	3	353.51354	1057.51879	0.49205	0.00017395	-0.0017775	-6.2836E-07	0.49028	0.00017332	353.51350902255274	19.516	0.18532	19.516	19.43	19.616	0					6	4	2	0	0	0	0.39215	1	5914	5914		42.396	12.078	2	292870			26559	6128	17895	17958	26909	26909		253			-0.007668971149087156
LYANVDFFK	9	Unmodified	_LYANVDFFK_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4;ABCA4|p.I398Sfs*14|1|0.14|ENSG00000198691|chr1:94079369-94079369|T/-|frameshift_variant	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7900390625	2	558.78985	1115.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.959	1	46.959	46.459	47.459	0								0	0	0	0.14881	1	17282	17282		60.118	5.3419	1				26560	7588	17896	17959	26910	26910					0.011986271030536955
LYAPYSTHF	9	Unmodified	_LYAPYSTHF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7669067382812	2	549.766374	1097.5182	0.22003	0.00012096	2.6184	0.0014395	2.8384	0.0015605	549.7682214144234	39.403	0.28147	39.403	39.319	39.6	0					21	9	3	0	0	0	0.23186	1	15482	15482		57.811	6.4758	1	285090			26561	1071	17897	17960	26911	26911					-0.0266623244810944
LYCDKPESI	9	Unmodified	_LYCDKPESI_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2598876953125	2	534.257525	1066.5005	3.3824	0.0018071	0.81176	0.00043369	4.1941	0.0022407	534.2579610752781	25.59	0.22065	25.59	25.481	25.701	0					7	4	2	0	0	0	0.27249	1	8990	8990		52.937	3.4952	1	753600	+		26562	14154	17898	17961	26912	26912					-0.030093157652800073
LYCGKTLLF	9	Carbamidomethyl (C)	_LYC(Carbamidomethyl (C))GKTLLF_	LYC(1)GKTLLF		LYC(62)GKTLLF		0	1	0		nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-3|JKAMP	nc|ENSG00000050130|Q9P055-3|JKAMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8028564453125	2	557.801903	1113.58925	1.7317	0.00096596	-1.1773	-0.00065669	0.55445	0.00030928	557.8013098599123	45.529	0.35419	45.529	45.417	45.771	0					42	19	3	0	0	0	0.19605	1	17580	17580		62.107	24.948	1	482420			26563	1244	17899	17962	26913	26913	45				0.037001442650534955
LYCQLIKQTN	10	Unmodified	_LYCQLIKQTN_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.3258056640625	2	612.326273	1222.63799	-1.991	-0.0012191	-0.35623	-0.00021813	-2.3472	-0.0014373	612.3261477522962	31.702	0.31726	31.702	31.545	31.862	0					15	9	3	0	0	0	0.56931	1	10937	10937		37.812	0.30334	1	124210			26564	4676	17900	17963	26914	26914					0.03558012834173496
LYDLLLEML	9	Oxidation (M)	_LYDLLLEM(Oxidation (M))L_		LYDLLLEM(1)L		LYDLLLEM(51)L	0	0	1		nc|ENSG00000091831|P03372-3|ESR1;nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1	nc|ENSG00000091831|P03372-3|ESR1	nc|ENSG00000091831|P03372-3|ESR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.20831298828125	3	380.206993	1137.59915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.191	1	25.191	24.691	25.691	0								0	0	0	0.19749	1	8911	8911		51.335	6.9583	1				26565	1863	17901	17964	26915	26915		84			0.03585287479791077
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.307861328125	2	524.307875	1046.6012	0.069461	3.6419E-05	0.010439	5.4731E-06	0.0799	4.1892E-05	524.3076755740166	44.675	0.1371	44.675	44.577	44.714	0					11	7	2	0	0	0	0.22837	1	17352	17352		58.23	6.8945	1	70467			26566	7217	17902	17965	26916	26916					0.07976084279880524
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3091430664062	2	524.307875	1046.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.567	1	44.567	44.067	45.067	0								0	0	0	0.22284	1	17855	17855		47.657	7.0847	1				26567	7217	17902	17965	26917	26917					0.07976084279880524
LYEIELIE	8	Unmodified	_LYEIELIE_					0	0	0			REV__ZBTB16|p.E116K|1|0.15|ENSG00000109906|chr11:114063646-114063646|G/A|missense_variant	REV__ZBTB16|p.E116K|1|0.15|ENSG00000109906|chr11:114063646-114063646|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.27508544921875	2	511.276241	1020.53793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.248	1	20.248	19.748	20.748	0								0	0	0	1.7419	1	6251	6251		26.796	23.637	1		+		26568	13918	17903	17966	26918	26918					0.028480987719945006
LYEKVNEK	8	Unmodified	_LYEKVNEK_					0	0	0			REV__ENOPH1|p.E36K|1|0.31|ENSG00000145293|chr4:82447941-82447941|G/A|missense_variant	REV__ENOPH1|p.E36K|1|0.31|ENSG00000145293|chr4:82447941-82447941|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.779296875	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.758	1	24.758	24.258	25.258	0								0	0	0	1.7419	1	8580	8580		84.916	2.675	1		+		26569	12804	17904	17967	26919	26919					0.034500367233818
LYETGFGFAV	10	Unmodified	_LYETGFGFAV_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2728881835938	2	552.274032	1102.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.415	1	50.415	49.915	50.915	0								0	0	0	0.37276	1	19884	19884		38.806	5.9937	1		+		26570	17417	17905	17968	26920	26920					-0.013653656508950007
LYFPEEKQEW	10	Unmodified	_LYFPEEKQEW_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	684.8269653320312	2	684.82716	1367.63977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.562	1	34.562	34.062	35.062	0								0	0	0	0.4201	1	11663	11663		21.96	0	1				26571	1130	17906	17969	26921	26921					-0.029346548762305247
LYFPTRVES	9	Unmodified	_LYFPTRVES_					0	0	0			REV__ENST00000583978.5_1_17:80377675-80377780:+|nuORF	REV__ENST00000583978.5_1_17:80377675-80377780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2947998046875	2	556.292756	1110.57096	3.5309	0.0019642	-0.023113	-1.2857E-05	3.5077	0.0019513	556.2928821284139	30.269	0.21309	30.269	30.163	30.376	0					10	4	3	0	0	0	0.1115	1	11200	11200		76.774	0	1	757110	+		26572	20466	17907	17970	26922	26922					0.02009725614720992
LYFSNGGLV	9	Unmodified	_LYFSNGGLV_					0	0	0			REV__JAG2|p.G473Afs*7|1|0.31|ENSG00000184916|chr14:105150875-105150875|C/-|frameshift_variant	REV__JAG2|p.G473Afs*7|1|0.31|ENSG00000184916|chr14:105150875-105150875|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2540283203125	2	485.255643	968.496732	-0.24212	-0.00011749	-2.5736	-0.0012488	-2.8157	-0.0013663	485.254427352689	32.619	0.25631	32.619	32.492	32.748	0					14	6	3	0	0	0	0.26904	1	12002	12002		53.351	5.4358	1	270570	+		26573	16997	17908	17971	26923	26923					0.011223825232036688
LYFYRTMSLR	10	Unmodified	_LYFYRTMSLR_					0	0	0			REV__ENST00000529565.1_1_11:104815482-104817977:-|nuORF	REV__ENST00000529565.1_1_11:104815482-104817977:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.57244873046875	3	450.572669	1348.69618	-0.40255	-0.00018138	0.055899	2.5187E-05	-0.34665	-0.00015619	450.5726579246046	19.599	0.11561	19.599	19.541	19.656	0					4	2	2	0	0	0	0.67464	1	6101	6101		25.126	1.6116	1	606690	+		26574	17297	17909	17972	26924	26924					0.03577694479440652
LYGALSVASV	10	Unmodified	_LYGALSVASV_					0	0	0			REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2763671875	2	490.276575	978.538597	0.81177	0.00039799	-1.8098	-0.00088731	-0.99803	-0.00048931	490.2756635956031	35.386	0.30727	35.386	35.305	35.613	0					24	8	4	0	0	0	0.357	1	13274	13274		60.972	2.7257	1	1449500	+		26575	20383	17910	17973	26925	26925					0.04846938211721863
LYGCHRGM	8	Unmodified	_LYGCHRGM_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF;REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7137145996094	2	468.712565	935.410577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.269	1	38.269	37.769	38.769	0								0	0	0	1.7419	1	15007	15007		41.208	0.63575	1		+		26576	15138;13134	17911	17974	26926	26926					-0.05971223854805885
LYGCHRGM	8	Unmodified	_LYGCHRGM_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF;REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.71453857421875	2	468.712565	935.410577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.57	1	43.57	43.07	44.07	0								0	0	0	1.7419	1	17031	17031		37.028	1.4102	1		+		26577	15138;13134	17911	17974	26927	26927					-0.05971223854805885
LYGCHRGM	8	Unmodified	_LYGCHRGM_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF;REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7138977050781	2	468.712565	935.410577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.918	1	43.918	43.418	44.418	0								0	0	0	1.7419	1	17145	17145		37.028	1.8278	1		+		26578	15138;13134	17911	17974	26928	26928					-0.05971223854805885
LYGCHRGM	8	Unmodified	_LYGCHRGM_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF;REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7143249511719	2	468.712565	935.410577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.166	1	46.166	45.666	46.666	0								0	0	0	1.7419	1	17778	17778		29.842	3.0454	1		+		26579	15138;13134	17911	17974	26929	26929					-0.05971223854805885
LYGCHRGM	8	Unmodified	_LYGCHRGM_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF;REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7142639160156	2	468.712565	935.410577	2.5973	0.0012174	0.34039	0.00015954	2.9377	0.0013769	468.7126974810986	29.181	4.0206	29.181	29.026	33.046	0					159	81	5	0	0	0	0.6282	2	10812	10812;10985		44.531	44.531	1	18521000	+		26580	15138;13134	17911	17974	26930;26931	26930					-0.05971223854805885
LYGCHRGM	8	Unmodified	_LYGCHRGM_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF;REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7132568359375	2	468.712565	935.410577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.583	1	46.583	46.083	47.083	0								0	0	0	1.7419	1	18637	18637		39.021	1.8624	1		+		26581	15138;13134	17911	17974	26932	26932					-0.05971223854805885
LYGDYHAN	8	Unmodified	_LYGDYHAN_					0	0	0			REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.71142578125	2	476.711599	951.408646	-0.36168	-0.00017242	0.095748	4.5644E-05	-0.26594	-0.00012677	476.71162032680814	25.283	0.74191	25.283	25.132	25.874	0					43	15	4	0	0	0	0.60719	1	8628	8628		47.916	5.4411	1	1150700	+		26582	13278	17912	17975	26933	26933					-0.06900238067430564
LYGDYHAN	8	Unmodified	_LYGDYHAN_					0	0	0			REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7113342285156	2	476.711599	951.408646	-0.36069	-0.00017194	-0.066238	-3.1576E-05	-0.42693	-0.00020352	476.71152109019005	26.365	0.85739	26.365	25.903	26.76	0					42	20	3	0	0	0	0.60719	1	9091	9091		47.916	7.343	1	493180	+		26583	13278	17912	17975	26934	26934					-0.06900238067430564
LYGDYHAN	8	Unmodified	_LYGDYHAN_					0	0	0			REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7115478515625	2	476.711599	951.408646	-1.517	-0.00072318	0.97272	0.00046371	-0.5443	-0.00025947	476.7119331561986	25.062	0.46824	25.062	24.967	25.435	0					17	15	2	0	0	0	0.60719	1	7730	7730		47.916	7.343	1	158460	+		26584	13278	17912	17975	26935	26935					-0.06900238067430564
LYGDYHAN	8	Unmodified	_LYGDYHAN_					0	0	0			REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.71209716796875	2	476.711599	951.408646	0.63584	0.00030311	-0.93168	-0.00044414	-0.29583	-0.00014103	476.7111697452568	21.735	0.81379	21.735	21.407	22.22	0					35	16	4	0	0	0	0.66372	1	7254	7254		38.806	38.806	1	510410	+		26585	13278	17912	17975	26936	26936					-0.06900238067430564
LYGDYHAN	8	Unmodified	_LYGDYHAN_					0	0	0			REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7107238769531	2	476.711599	951.408646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.69	1	21.69	21.19	22.19	0								0	0	0	1.7419	1	6333	6333		47.916	7.343	1		+		26586	13278	17912	17975	26937	26937					-0.06900238067430564
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;GIPC1|p.R91H|1|0.19|ENSG00000123159|chr19:14482705-14482705|C/T|missense_variant;GIPC1|p.G115Afs*13|1|0.3|ENSG00000123159|chr19:14480723-14480723|C/-|frameshift_variant;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.27911376953125	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.958	1	39.958	39.458	40.458	0								0	0	0	0.13137	1	12943	12943		64.207	14.766	1				26587	3305	17913	17976	26938	26938					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;GIPC1|p.R91H|1|0.19|ENSG00000123159|chr19:14482705-14482705|C/T|missense_variant;GIPC1|p.G115Afs*13|1|0.3|ENSG00000123159|chr19:14480723-14480723|C/-|frameshift_variant;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2782897949219	2	506.279118	1010.54368	0.83823	0.00042438	-0.34828	-0.00017633	0.48995	0.00024805	506.278921246892	40.296	0.44598	40.296	40.158	40.604	0					43	18	4	0	0	0	0.098791	1	15329	15329		79.713	22.992	1	429190			26588	3305	17913	17976	26939	26939					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;GIPC1|p.R91H|1|0.19|ENSG00000123159|chr19:14482705-14482705|C/T|missense_variant;GIPC1|p.G115Afs*13|1|0.3|ENSG00000123159|chr19:14480723-14480723|C/-|frameshift_variant;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.27923583984375	2	506.279118	1010.54368	-0.70935	-0.00035913	1.7696	0.00089589	1.0602	0.00053676	506.2800316931096	40.043	0.17673	40.043	39.971	40.148	0					16	10	2	0	0	0	0.16002	1	13422	13422		66.429	3.123	1	100340			26589	3305	17913	17976	26940	26940					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;GIPC1|p.R91H|1|0.19|ENSG00000123159|chr19:14482705-14482705|C/T|missense_variant;GIPC1|p.G115Afs*13|1|0.3|ENSG00000123159|chr19:14480723-14480723|C/-|frameshift_variant;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2792053222656	2	506.279118	1010.54368	-0.24261	-0.00012283	0.73176	0.00037047	0.48914	0.00024764	506.2794419679529	40.159	0.36106	40.159	40.063	40.424	0					19	8	3	0	0	0	0.047412	1	15914	15914		96.19	13.885	1	292880			26590	3305	17913	17976	26941	26941					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;GIPC1|p.R91H|1|0.19|ENSG00000123159|chr19:14482705-14482705|C/T|missense_variant;GIPC1|p.G115Afs*13|1|0.3|ENSG00000123159|chr19:14480723-14480723|C/-|frameshift_variant;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.27880859375	2	506.279118	1010.54368	1.2602	0.00063799	-1.3159	-0.00066619	-0.055691	-2.8195E-05	506.2783709124272	40.18	0.67238	40.18	39.957	40.629	0					39	15	4	0	0	0	0.010494	1	15924	15924		139.97	38.759	1	2297500			26591	3305	17913	17976	26942	26942					0.038832420743119656
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.27117919921875	2	475.271293	948.528032	-0.0061553	-2.9254E-06	-1.355	-0.00064401	-1.3612	-0.00064694	475.27046995843403	30.741	0.45273	30.741	30.652	31.105	0					31	18	4	0	0	0	0.23898	1	9814	9814		116.9	0	1	717050	+		26592	15922	17914	17977	26943	26943					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2704772949219	2	475.271293	948.528032	-0.20847	-9.9081E-05	-0.34498	-0.00016396	-0.55345	-0.00026304	475.2710770616408	30.742	0.37062	30.742	30.646	31.017	0					38	15	4	0	0	0	0.43813	1	9798	9798		66.429	0	1	2123900	+		26593	15922	17914	17977	26944	26944					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2709045410156	2	475.271293	948.528032	0.32113	0.00015262	-1.6615	-0.00078966	-1.3404	-0.00063703	475.2704659503452	31.008	0.88077	31.008	30.703	31.584	0					49	21	5	0	0	0	0.23895	1	11227	11227		134.81	0	1	4515300	+		26594	15922	17914	17977	26945	26945					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.27105712890625	2	475.271293	948.528032	-0.43128	-0.00020498	0.020819	9.8947E-06	-0.41046	-0.00019508	475.27129283130404	30.991	0.5473	30.991	30.905	31.452	0					33	13	4	0	0	0	0.23895	1	11219	11219		134.81	0	1	7319600	+		26595	15922	17914	17977	26946	26946					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.27099609375	2	475.271293	948.528032	-1.5631	-0.00074289	0.7844	0.0003728	-0.77869	-0.00037009	475.2715909494213	30.78	0.61484	30.78	30.667	31.282	0					49	22	4	0	0	0	0.2678	1	10117	10117		93.195	0	1	7191300	+		26596	15922	17914	17977	26947	26947					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2708740234375	2	475.271293	948.528032	-0.42134	-0.00020025	-0.52293	-0.00024853	-0.94427	-0.00044878	475.2709909399461	30.797	0.49169	30.797	30.654	31.145	0					35	13	5	0	0	0	0.23895	1	10509	10509		134.81	0	1	4250900	+		26597	15922	17914	17977	26948	26948					0.05170955557275647
LYGLEKKEK	9	Unmodified	_LYGLEKKEK_					0	0	0			REV__ENSG00000185946|ENST00000423855|RNPC3	REV__ENSG00000185946|ENST00000423855|RNPC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8129272460938	2	554.324057	1106.63356	-0.023812	-1.32E-05	0.73061	0.000405	0.7068	0.0003918	554.3243570953132	23.238	0.5173	23.238	23.128	23.646	0					22	10	4	0	0	0	0.55048	1	7943	7943		19.997	0	1	2299800	+		26598	17056	17915	17978	26949	26949					0.08450871682885008
LYGQVQVF	8	Unmodified	_LYGQVQVF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;NOL9|p.S460Afs*5|1|0.22|ENSG00000162408|chr1:6532620-6532620|T/-|frameshift_variant;NOL9|p.R272Gfs*6|2|0.36|ENSG00000162408|chr1:6545111-6545111|T/-|frameshift_variant	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2577209472656	2	477.258185	952.501818	0.64088	0.00030587	0.0032399	1.5463E-06	0.64412	0.00030741	477.2579838373831	47.698	0.14499	47.698	47.643	47.788	0					13	8	2	0	0	0	0.49887	1	18176	18176		60.294	16.177	1	104000			26599	5459	17916	17979	26950	26950					0.023666863858124998
LYGRVGAQ	8	Unmodified	_LYGRVGAQ_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-3|IQCN	REV__nc|ENSG00000130518|Q9H0B3-3|IQCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2401428222656	2	432.240327	862.466101	0.16677	7.2084E-05	-0.54225	-0.00023438	-0.37548	-0.0001623	432.2400025668868	20.218	0.14988	20.218	20.125	20.275	0					6	3	2	0	0	0	0.49887	1	6245	6245		60.294	6.9425	1	537790	+		26600	14582	17917	17980	26951	26951					0.02936648928800878
LYGSKHVEK	9	Unmodified	_LYGSKHVEK_					0	0	0			REV__MSN|p.P297Afs*2|1|0.34|ENSG00000147065|chrX:65735356-65735357|-/A|frameshift_variant	REV__MSN|p.P297Afs*2|1|0.34|ENSG00000147065|chrX:65735356-65735357|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7946166992188	2	530.792924	1059.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.647	1	21.647	21.147	22.147	0								0	0	0	0.24544	1	6312	6312		44.377	19.858	1		+		26601	13457	17918	17981	26952	26952					0.04389145334562272
LYHCSRLLL	9	Unmodified	_LYHCSRLLL_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.21087646484375	3	373.211071	1116.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.103	1	25.103	24.603	25.603	0								0	0	0	0.36266	1	7931	7931		21.96	2.5999	1				26602	1188	17919	17982	26953	26953					0.057743687335005234
LYHKAYVSAP	10	Unmodified	_LYHKAYVSAP_					0	0	0			REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	383.5414123535156	3	383.541475	1147.60259	-1.155	-0.000443	1.0594	0.00040633	-0.095623	-3.6675E-05	383.5420399547549	30.648	0.22184	30.648	30.561	30.782	0					11	8	2	0	0	0	0.59277	1	10084	10084		35.152	3.5178	1	92312	+		26603	20567	17920	17983	26954	26954					0.03469718368660324
LYIIQNNSF	9	Unmodified	_LYIIQNNSF_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2928466796875	2	556.292756	1110.57096	3.5334	0.0019656	-2.5789	-0.0014346	0.95449	0.00053097	556.2911090399818	49.273	0.10899	49.273	49.238	49.347	0					12	6	2	0	0	0	0.098791	1	19497	19497		79.713	31.753	1	97171			26604	1689	17921	17984	26955	26955					0.02009725614720992
LYILENKE	8	Unmodified	_LYILENKE_					0	0	0			REV__tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	REV__tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2918395996094	2	511.281857	1020.54916	-0.0034838	-1.7812E-06	1.8522	0.00094701	1.8487	0.00094523	511.2823951438462	29.931	0.12699	29.931	29.884	30.011	0					5	3	2	0	0	0	0.49216	1	10725	10725		60.972	2.19	1	270260	+		26605	21683	17922	17985	26956	26956					0.03970920866140659
LYINHQFE	8	Unmodified	_LYINHQFE_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2648315429688	2	532.263999	1062.51345	1.7392	0.00092573	-1.2283	-0.00065377	0.51095	0.00027196	532.2631204360961	36.521	0.95488	36.521	36.411	37.366	0					56	19	5	0	0	0	0.49216	1	14356	14356		60.972	1.0412	1	14801000			26606	7820	17923	17986	26957	26957					-0.01531116590831516
LYINKANIW	9	Unmodified	_LYINKANIW_					0	0	0		ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.820556640625	2	567.818941	1133.62333	3.4703	0.0019705	-1.914	-0.0010868	1.5563	0.00088371	567.8177425192426	44.062	0.14722	44.062	43.973	44.121	0					10	6	2	0	0	0	0.14734	1	17657	17657		68.485	11.764	1	44778			26607	1867	17924	17987	26958	26958					0.06186308748328884
LYIQAVLL	8	Unmodified	_LYIQAVLL_					0	0	0			REV__ENST00000591565.1_1_19:14515197-14515620:+|nuORF	REV__ENST00000591565.1_1_19:14515197-14515620:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7938232421875	2	466.794404	931.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.261	1	47.261	46.761	47.761	0								0	0	0	1.7419	1	18884	18884		25.45	0	1		+		26608	20529	17925	17988	26959	26959					0.10573020459366944
LYIQKGIS	8	Unmodified	_LYIQKGIS_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2741394042969	2	461.273835	920.533118	-2.5119	-0.0011587	2.703	0.0012468	0.19112	8.8157E-05	461.27508044630594	33.289	0.10748	33.289	33.242	33.35	0					5	3	2	0	0	0	0.60719	1	11677	11677		47.916	1.9636	1	64462			26609	2902	17926	17989	26960	26960					0.06967259419900529
LYIVFIFAM	9	Unmodified	_LYIVFIFAM_					0	0	0		ENSG00000111700|ENST00000381545|SLCO1B3	ENSG00000111700|ENST00000381545|SLCO1B3	ENSG00000111700|ENST00000381545|SLCO1B3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.8111572265625	2	558.811739	1115.60893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.018	1	25.018	24.518	25.518	0								0	0	0	0.3269	1	7473	7473		29.842	0	1				26610	2687	17927	17990	26961	26961					0.05574520275808936
LYIVHPTMF	9	Unmodified	_LYIVHPTMF_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.798095703125	2	560.79662	1119.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.124	1	48.124	47.624	48.624	0								0	0	0	0.15865	1	19146	19146		57.811	13.694	1				26611	196	17928	17991	26962	26962					0.02368161610615971
LYKACLYAE	9	Unmodified	_LYKACLYAE_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2689819335938	2	537.270435	1072.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.224	1	39.224	38.724	39.724	0								0	0	0	0.28996	1	13997	13997		37.159	5.2042	1				26612	7390	17929	17992	26963	26963					-0.007044215229825568
LYKEKQAK	8	Unmodified	_LYKEKQAK_					0	0	0			REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2978515625	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.714	1	52.714	52.214	53.214	0								0	0	0	1.7419	1	19389	19389		25.45	0	1		+		26613	12049	17930	17993	26964	26964					0.07810333339944009
LYKETLEIE	9	Unmodified	_LYKETLEIE_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.306640625	2	569.305529	1136.59651	3.4461	0.0019619	-1.2756	-0.00072619	2.1705	0.0012357	569.3047829784662	45.273	0.93772	45.273	44.907	45.845	0					71	38	2	0	0	0	0.47038	1	18180	18180		35.618	1.4457	1	178030			26614	7189	17931	17994	26965	26965					0.03367155346472828
LYKKTQETL	9	Unmodified	_LYKKTQETL_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.3216552734375	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.608	1	20.608	20.108	21.108	0								0	0	0	0.15451	1	5545	5545		58.782	16.307	1				26615	2094	17932	17995	26966	26966					0.07206567820298915
LYKKTQETL	9	Unmodified	_LYKKTQETL_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.3220825195312	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.638	1	20.638	20.138	21.138	0								0	0	0	0.3063	1	5798	5798		33.922	3.6039	1				26616	2094	17932	17995	26967	26967					0.07206567820298915
LYKSSTDCL	9	Unmodified	_LYKSSTDCL_					0	0	0		ENSG00000153291|ENST00000371347|SLC25A27	ENSG00000153291|ENST00000371347|SLC25A27	ENSG00000153291|ENST00000371347|SLC25A27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2500610351562	2	515.2497	1028.48485	0.029222	1.5057E-05	-0.49514	-0.00025512	-0.46592	-0.00024006	515.2496322779335	32.063	0.2152	32.063	31.966	32.181	0					12	5	3	0	0	0	0.28897	1	11741	11741		51.193	3.2771	1	159080			26617	5049	17933	17996	26968	26968					-0.028256022823143212
LYKVQSTV	8	Unmodified	_LYKVQSTV_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7;REV__SLC26A7|p.K333Nfs*20|5|0.37|ENSG00000147606|chr8:91340519-91340519|A/-|frameshift_variant	REV__ENSG00000147606|ENST00000276609|SLC26A7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.27154541015625	2	469.271293	936.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.596	1	33.596	33.096	34.096	0								0	0	0	1.7419	1	11808	11808		42.396	8.2236	1		+		26618	15357;21529	17934	17997	26969	26969					0.05722955557280329
LYLAHLCV	8	Carbamidomethyl (C)	_LYLAHLC(Carbamidomethyl (C))V_	LYLAHLC(1)V		LYLAHLC(81)V		0	1	0		ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7661437988281	2	494.767863	987.521173	-2.477	-0.0012256	-1.452	-0.00071839	-3.929	-0.0019439	494.7671847736069	38.309	0.22936	38.309	38.211	38.44	0					18	11	2	0	0	0	0.31527	1	13688	13688		80.997	20.593	1	134410			26619	6826	17935	17998	26970	26970	292				0.026913194050621314
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.768798828125	2	530.769114	1059.52368	0.41472	0.00022012	0.11641	6.1787E-05	0.53113	0.00028191	530.7693266650132	38.432	0.18167	38.432	38.368	38.549	0					14	10	2	0	0	0	0.25109	1	12528	12528		55.504	0	1	94154			26620	2047	17936	17999	26971	26971					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7693481445312	2	530.769114	1059.52368	0.11813	6.27E-05	0.13892	7.3734E-05	0.25705	0.00013643	530.7693297813153	38.751	0.26817	38.751	38.68	38.948	0					22	10	3	0	0	0	0.023074	1	14727	14727		116.9	0	1	613860			26621	2047	17936	17999	26972	26972					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7696533203125	2	530.769114	1059.52368	1.7252	0.00091567	-0.55616	-0.00029519	1.169	0.00062048	530.768704932843	38.71	0.27486	38.71	38.623	38.897	0					29	10	4	0	0	0	0.034359	1	15189	15189		104.75	0	1	735530			26622	2047	17936	17999	26973	26973					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.76904296875	2	530.769114	1059.52368	0.28737	0.00015253	-0.18255	-9.6894E-05	0.10481	5.5632E-05	530.7691645359414	38.715	0.17842	38.715	38.638	38.817	0					10	6	2	0	0	0	0.0792	1	15200	15200		84.916	0	1	173440			26623	2047	17936	17999	26974	26974					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7692260742188	2	530.769114	1059.52368	-1.2175	-0.00064621	2.4199	0.0012844	1.2024	0.00063821	530.7703706402174	38.489	0.13272	38.489	38.415	38.548	0					10	6	2	0	0	0	0.087582	1	13777	13777		82.305	0	1	83083			26624	2047	17936	17999	26975	26975					-0.0037055365628475556
LYLFRKKM	8	Unmodified	_LYLFRKKM_					0	0	0			REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.82958984375	2	549.828255	1097.64196	3.7609	0.0020678	-0.96646	-0.00053139	2.7944	0.0015364	549.8275877531136	35.153	0.72228	35.153	34.998	35.721	0					44	14	5	0	0	0	0.37378	1	13579	13579		74.517	11.21	1	12351000	+		26625	18009	17937	18000	26976	26976					0.09704147118532092
LYLGDSRR	8	Unmodified	_LYLGDSRR_					0	0	0		ENST00000509943.1_1_17:48286340-48286481:+|nuORF	ENST00000509943.1_1_17:48286340-48286481:+|nuORF	ENST00000509943.1_1_17:48286340-48286481:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2687683105469	2	490.269616	978.524678	0.7709	0.00037795	-2.8358	-0.0013903	-2.0649	-0.0010124	490.26791064157226	41.779	0.15049	41.779	41.677	41.827	0					7	4	2	0	0	0	0.46905	1	16648	16648		63.306	2.9026	1	98927			26626	10227	17938	18001	26977	26977					0.03455705503279205
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF	ENSG00000108298|ENST00000225430|RPL19;ENST00000429272.1_1_2:131051524-131051887:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.24090576171875	3	394.241137	1179.70158	0.42681	0.00016827	-0.26508	-0.0001045	0.16174	6.3763E-05	394.24098103862343	37.579	0.25743	37.579	37.45	37.708	0					11	5	3	0	0	0	0.50881	1	14706	14706		44.377	1.981	1	151920			26627	2522;9473	17939	18002	26978	26978					0.118917413335339
LYLLGQLGDY	10	Unmodified	_LYLLGQLGDY_					0	0	0			REV__nc|ENSG00000141540|Q9BSA4-2|TTYH2	REV__nc|ENSG00000141540|Q9BSA4-2|TTYH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.8104248046875	2	577.808239	1153.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.455	1	32.455	31.955	32.955	0								0	0	0	0.4201	1	10495	10495		19.104	0.77911	1		+		26628	15122	17940	18003	26979	26979					0.03126878928969745
LYLSSHGLW	9	Unmodified	_LYLSSHGLW_					0	0	0		nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant	nc|ENSG00000197748|Q8NDM7-3|CFAP43	nc|ENSG00000197748|Q8NDM7-3|CFAP43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.282958984375	2	538.282192	1074.54983	3.3685	0.0018132	-2.5066	-0.0013492	0.86196	0.00046398	538.2808341812743	45.633	0.13729	45.633	45.532	45.67	0					9	5	2	0	0	0	0.23186	1	18268	18268		57.811	0	1	71564			26629	493	17941	18004	26980	26980					0.01553760305864671
LYLVPCTL	8	Unmodified	_LYLVPCTL_					0	0	0		ENST00000589515.2_1_19:2343134-2351610:+|nuORF;nc|ENSG00000005206|Q8TCT7-4|SPPL2B;ENSG00000138600|ENST00000261854|SPPL2A;ENSG00000005206|ENST00000613503|SPPL2B	ENST00000589515.2_1_19:2343134-2351610:+|nuORF	ENST00000589515.2_1_19:2343134-2351610:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.26116943359375	2	461.259339	920.504126	0.7273	0.00033547	4.1203	0.0019005	4.8476	0.002236	461.26154047706234	31.285	0.10555	31.285	31.264	31.369	0					6	4	2	0	0	0	0.79176	1	10051	10051		21.702	1.2205	1	48893			26630	957	17942	18005	26981	26981					0.040693987992540315
LYLYNDIF	8	Unmodified	_LYLYNDIF_					0	0	0			REV__tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1	REV__tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7694091796875	2	530.771126	1059.5277	-0.093221	-4.9479E-05	-3.493	-0.001854	-3.5862	-0.0019035	530.7692846565739	38.489	0.14965	38.489	38.455	38.605	0					12	8	2	0	0	0	0.44433	1	12986	12986		65.803	2.4969	1	50170	+		26631	21946	17943	18006	26982	26982					0.00031535837410956447
LYMKNGQGF	9	Unmodified	_LYMKNGQGF_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2607421875	2	529.260402	1056.50625	0.47969	0.00025388	-0.73959	-0.00039143	-0.25989	-0.00013755	529.2599933859149	31.094	0.16783	31.094	31.036	31.204	0					12	6	3	0	0	0	0.11118	1	9970	9970		76.847	21.342	1	180420			26632	2983	17944	18007	26983	26983					-0.019741724629284363
LYMKNGQGF	9	Unmodified	_LYMKNGQGF_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.260009765625	2	529.260402	1056.50625	0.11199	5.9272E-05	-0.22485	-0.00011901	-0.11287	-5.9735E-05	529.2600281007586	31.361	0.38177	31.361	31.108	31.49	0					20	8	4	0	0	0	0.05357	1	11400	11400		94.006	40.655	1	1028100			26633	2983	17944	18007	26984	26984					-0.019741724629284363
LYMKNGQGF	9	Unmodified	_LYMKNGQGF_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2597045898438	2	529.260402	1056.50625	0.44178	0.00023382	-0.23625	-0.00012504	0.20553	0.00010878	529.2599188177753	31.156	0.14815	31.156	31.077	31.225	0					9	5	2	0	0	0	0.18605	1	10284	10284		63.306	16.54	1	117210			26634	2983	17944	18007	26985	26985					-0.019741724629284363
LYMKNGQGF	9	Unmodified	_LYMKNGQGF_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.260986328125	2	529.260402	1056.50625	0.28622	0.00015149	0.53527	0.0002833	0.82149	0.00043478	529.2604333176429	31.372	0.50174	31.372	31.012	31.513	0					19	11	4	0	0	0	0.043797	1	11814	11814		97.473	23.498	1	695640			26635	2983	17944	18007	26986	26986					-0.019741724629284363
LYMKNGQGF	9	Unmodified	_LYMKNGQGF_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2605590820312	2	529.260402	1056.50625	-1.1721	-0.00062037	2.0107	0.0010642	0.83853	0.0004438	529.2611013592457	31.162	0.29189	31.162	30.974	31.266	0					13	8	2	0	0	0	0.18605	1	10688	10688		63.306	11.971	1	192610			26636	2983	17944	18007	26987	26987					-0.019741724629284363
LYMLMEACLG	10	Unmodified	_LYMLMEACLG_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.2653198242188	2	572.265981	1142.51741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.74	1	15.74	15.24	16.24	0								0	0	0	0.4201	1	4364	4364		20.947	1.6843	1				26637	7086	17945	18008	26988	26988					-0.04814854475330321
LYMLRLFK	8	Unmodified	_LYMLRLFK_					0	0	0			REV__CYP2E1|p.N238Mfs*5|1|0.19|ENSG00000130649|chr10:133532751-133532751|A/-|frameshift_variant	REV__CYP2E1|p.N238Mfs*5|1|0.19|ENSG00000130649|chr10:133532751-133532751|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.32568359375	2	542.322805	1082.63106	3.5725	0.0019374	2.5818	0.0014002	6.1543	0.0033376	542.3242473612181	48.811	0.17939	48.811	48.744	48.924	0					12	9	2	0	0	0	0.74117	1	19374	19374		28.254	0	1	73947	+		26638	12660	17946	18009	26989	26989					0.09304744744235904
LYNAHETKI	9	Unmodified	_LYNAHETKI_					0	0	0			REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7905883789062	2	544.790381	1087.56621	3.7065	0.0020193	-3.3974	-0.0018509	0.3091	0.0001684	544.7884591675008	31.993	0.26732	31.993	31.835	32.102	0					13	5	4	0	0	0	0.07136	1	12033	12033		87.696	10.379	1	503220	+		26639	12239	17947	18010	26990	26990					0.025928414719373905
LYNAVNQL	8	Unmodified	_LYNAVNQL_					0	0	0			REV__ENSG00000178394|ENST00000323865|HTR1A	REV__ENSG00000178394|ENST00000323865|HTR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7530822753906	2	467.753267	933.491981	-0.51	-0.00023856	0.87725	0.00041033	0.36724	0.00017178	467.7533639265295	25.221	0.21895	25.221	25.162	25.381	0					10	4	3	0	0	0	0.39542	1	8818	8818		71.378	1.7503	1	218650	+		26640	16733	17948	18011	26991	26991					0.022574983804247495
LYNAWEDAQF	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LYNAWEDAQF_					1	0	0		ENST00000263967.3_1_3:178921342-178921384:+|nuORF	ENST00000263967.3_1_3:178921342-178921384:+|nuORF	ENST00000263967.3_1_3:178921342-178921384:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	649.7896118164062	2	649.788035	1297.56152	2.0641	0.0013412	0.37176	0.00024156	2.4359	0.0015828	649.7884399791765	15.425	0.16393	15.425	15.37	15.534	0					10	3	4	0	0	0	0.36476	1	4226	4226		60.118	20.06	1	1209200			26641	8323	17949	18012	26992	26992					-0.0753608746149439
LYNNEPFA	8	Unmodified	_LYNNEPFA_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000473429.5_1_1:110584363-110592127:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2307434082031	2	484.229625	966.444697	3.4845	0.0016873	-1.7223	-0.00083397	1.7622	0.00085331	484.2289081923231	29.272	0.087521	29.272	29.236	29.324	0					5	3	2	0	0	0	0.75243	1	9532	9532		26.796	0	1	43049			26642	4524	17950	18013	26993	26993					-0.039867808905796664
LYNSQADGL	9	Unmodified	_LYNSQADGL_					0	0	0			REV__ENSG00000171311|ENST00000370902|EXOSC1	REV__ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7391662597656	2	490.737814	979.461075	2.6775	0.0013139	-0.36772	-0.00018045	2.3097	0.0011335	490.7378356816043	23.109	0.21111	23.109	23.007	23.218	0					17	4	5	0	0	0	0.026538	1	7797	7797		112.41	8.3541	1	5791600	+		26643	16407	17951	18014	26994	26994					-0.02947699724472841
LYNTGDLLL	9	Unmodified	_LYNTGDLLL_					0	0	0			REV__tr|U7SKZ9|U7SKZ9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02010PE=4SV=1	REV__tr|U7SKZ9|U7SKZ9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02010PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2815246582031	2	511.281857	1020.54916	3.0874	0.0015785	-2.2376	-0.0011441	0.84978	0.00043448	511.2808362838553	29.853	0.26634	29.853	29.764	30.031	0					12	5	3	0	0	0	0.087582	1	11004	11004		82.305	2.3658	1	688440	+		26644	21762	17952	18015	26995	26995					0.03970920866152028
LYPGRKAPQ	9	Unmodified	_LYPGRKAPQ_					0	0	0		ENST00000537345.5_1_1:116947038-116947215:+|nuORF	ENST00000537345.5_1_1:116947038-116947215:+|nuORF	ENST00000537345.5_1_1:116947038-116947215:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2969360351562	2	515.295633	1028.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.2	1	23.2	22.7	23.7	0								0	0	0	0.23459	1	7961	7961		45.952	1.8352	1				26645	10500	17953	18016	26996	26996					0.06356868917009706
LYPGTTGLK	9	Unmodified	_LYPGTTGLK_					0	0	0		ENST00000537247.5_1_12:100988676-101004866:+|nuORF	ENST00000537247.5_1_12:100988676-101004866:+|nuORF	ENST00000537247.5_1_12:100988676-101004866:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2701721191406	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.187	1	41.187	40.687	41.687	0								0	0	0	0.22284	1	16198	16198		47.657	5.2612	1				26646	10499	17954	18017	26997	26997					0.05170955557287016
LYPSIRLS	8	Unmodified	_LYPSIRLS_					0	0	0			REV__ENST00000594070.5_1_19:19206777-19217195:+|nuORF	REV__ENST00000594070.5_1_19:19206777-19217195:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7802429199219	2	474.779285	947.544017	0.71318	0.0003386	-0.56706	-0.00026923	0.14612	6.9374E-05	474.7790432904647	44.189	0.19353	44.189	44.103	44.296	0					12	8	2	0	0	0	0.44433	1	17696	17696		65.803	10.299	1	66485	+		26647	20552	17955	18018	26998	26998					0.06814661794192034
LYPVGWCQL	9	Carbamidomethyl (C)	_LYPVGWC(Carbamidomethyl (C))QL_	LYPVGWC(1)QL		LYPVGWC(42)QL		0	1	0		ENSG00000011258|ENST00000586178|MBTD1;nc|ENSG00000011258|Q05BQ5-3|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.19287109375	3	379.191677	1134.5532	3.2442	0.0012302	0.061264	2.3231E-05	3.3054	0.0012534	379.19169717201083	22.863	0.46241	22.863	22.755	23.218	0					20	9	4	0	0	0	0.39215	1	7659	7659		42.396	42.396	1	3965200			26648	1046	17956	18019	26999	26999	34				-0.008693129118000797
LYPVLMRAL	9	Unmodified	_LYPVLMRAL_					0	0	0		nc|ENSG00000103932|Q9BWH6-3|RPAP1;RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant;nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-3|RPAP1	nc|ENSG00000103932|Q9BWH6-3|RPAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3226928710938	2	538.320263	1074.62597	0.81793	0.00044031	2.2774	0.001226	3.0953	0.0016663	538.32119230404	23.575	0.10162	23.575	23.52	23.622	0					7	4	2	0	0	0	0.60043	1	6855	6855		21.702	2.5988	1	79326			26649	2261	17957	18020	27000	27000					0.091644408816137
LYPVWKRG	8	Unmodified	_LYPVWKRG_					0	0	0		GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant	GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2978820800781	2	509.795269	1017.57599	-0.47589	-0.00024261	-2.6602	-0.0013562	-3.1361	-0.0015988	509.79364969905157	24.334	0.62308	24.334	24.089	24.712	0					40	20	3	0	0	0	0.74117	1	7528	7528		28.254	3.7351	1	538560			26650	4063	17958	18021	27001	27001					0.06790074267996715
LYQGMSLP	8	Unmodified	_LYQGMSLP_					0	0	0			REV__HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant	REV__HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.73046875	2	454.730946	907.447339	-0.42231	-0.00019204	-0.76269	-0.00034682	-1.185	-0.00053886	454.7306120317349	38.691	0.21916	38.691	38.543	38.763	0					7	4	2	0	0	0	0.32408	1	15252	15252		79.939	14.136	1	57988	+		26651	12900	17959	18022	27002	27002					-0.010086487572721126
LYQIGKLS	8	Unmodified	_LYQIGKLS_					0	0	0			REV__ENSG00000159708|ENST00000329956|LRRC36	REV__ENSG00000159708|ENST00000329956|LRRC36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2738037109375	2	461.273835	920.533118	-0.70715	-0.00032619	0.3951	0.00018225	-0.31205	-0.00014394	461.2740879520492	33.507	0.21652	33.507	33.443	33.659	0					11	5	3	0	0	0	0.25873	1	12400	12400		96.19	8.494	1	225940	+		26652	15724	17960	18023	27003	27003					0.06967259419923266
LYQQLLSF	8	Unmodified	_LYQQLLSF_					0	0	0		nc|ENSG00000176406|Q9UQ26-7|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2	nc|ENSG00000176406|Q9UQ26-7|RIMS2	nc|ENSG00000176406|Q9UQ26-7|RIMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.2789306640625	2	506.279118	1010.54368	0.1022	5.1742E-05	0.26536	0.00013435	0.36756	0.00018609	506.27935550611846	40.023	0.15887	40.023	39.964	40.123	0					15	8	2	0	0	0	0.65148	1	14231	14231		40.778	1.5253	1	122390			26653	6606	17961	18024	27004	27004					0.038832420743460716
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.5486755371094	3	392.548852	1174.62473	0.88512	0.00034745	-0.69113	-0.0002713	0.19399	7.6151E-05	392.54849362864087	30.328	0.37357	30.328	30.206	30.579	0					19	9	3	0	0	0	0.41113	1	10918	10918		40.778	8.0276	1	401370			26654	8001	17962	18025	27005	27005					0.0443994283707525
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.3201293945312	2	588.31964	1174.62473	0.15013	8.8324E-05	0.15188	8.9355E-05	0.30201	0.00017768	588.319882072307	30.319	0.29206	30.319	30.234	30.526	0					14	7	3	0	0	0	0.098791	1	10909	10909		63.306	13.282	1	383000			26655	8001	17962	18025	27006	27006					0.0443994283707525
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.3193359375	2	588.31964	1174.62473	-0.17041	-0.00010025	0.58241	0.00034264	0.412	0.00024239	588.3198673458512	30.306	0.38548	30.306	30.205	30.59	0					15	8	3	0	0	0	0.1424	1	11303	11303		53.351	16.192	1	353460			26656	8001	17962	18025	27007	27007					0.0443994283707525
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.54876708984375	3	392.548852	1174.62473	0.45337	0.00017797	-0.60596	-0.00023787	-0.15259	-5.99E-05	392.5485978966805	30.238	0.89539	30.238	30.131	31.027	0					40	18	4	0	0	0	0.35021	1	11180	11180		45.972	10.82	1	2802600			26657	8001	17962	18025	27008	27008					0.0443994283707525
LYQVVSQRF	9	Unmodified	_LYQVVSQRF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.313720703125	2	570.314023	1138.61349	0.022813	1.301E-05	0.94135	0.00053686	0.96416	0.00054987	570.3137967788409	37.289	0.15083	37.289	37.207	37.358	0					8	4	3	0	0	0	0.11635	1	14133	14133		78.264	19.482	1	68174			26658	11709	17963	18026	27009	27009					0.04973120742965875
LYQVVSQRF	9	Unmodified	_LYQVVSQRF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.3146362304688	2	570.314023	1138.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.222	1	37.222	36.722	37.722	0								0	0	0	0.037083	1	14534	14534		85.862	29.141	1				26659	11709	17963	18026	27010	27010					0.04973120742965875
LYRAALET	8	Unmodified	_LYRAALET_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.76068115234375	2	468.761092	935.507631	-1.1402	-0.00053448	0.34745	0.00016287	-0.79276	-0.00037161	468.76124913591303	29.543	0.19663	29.543	29.457	29.653	0					18	7	3	0	0	0	0.59411	1	9618	9618		50.025	4.0726	1	369050			26660	4594	17964	18027	27011	27011					0.03729784897461741
LYRGGRLQ	8	Unmodified	_LYRGGRLQ_					0	0	0			REV__ENSG00000139044|ENST00000266383|B4GALNT3	REV__ENSG00000139044|ENST00000266383|B4GALNT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.780029296875	2	481.780151	961.545748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.525	1	20.525	20.025	21.025	0								0	0	0	1.7419	1	6382	6382		33.516	3.0119	1		+		26661	15009	17965	18028	27012	27012					0.06343715602793054
LYRKELTP	8	Unmodified	_LYRKELTP_					0	0	0			REV__PPFIA2|p.T341P|1|0.22|ENSG00000139220|chr12:81375906-81375906|T/G|missense_variant	REV__PPFIA2|p.T341P|1|0.22|ENSG00000139220|chr12:81375906-81375906|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.5343933105469	3	340.53432	1018.58113	0.51063	0.00017389	-0.72033	-0.0002453	-0.2097	-7.1411E-05	340.5341392570092	26.884	0.44623	26.884	26.564	27.01	0					16	10	2	0	0	0	0.75243	1	9337	9337		21.96	0	1	288290	+		26662	21406	17966	18029	27013	27013					0.07258333339939327
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	615.3192138671875	2	615.319306	1228.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.997	1	48.997	48.497	49.497	0								0	0	0	0.30009	1	19428	19428		35.152	5.982	1				26663	3277	17967	18030	27014	27014					0.018891033973659432
LYRMPGMF	8	Unmodified	_LYRMPGMF_					0	0	0		FOXS1|p.T323M|1|0.4|ENSG00000179772|chr20:31844575-31844575|G/A|missense_variant	FOXS1|p.T323M|1|0.4|ENSG00000179772|chr20:31844575-31844575|G/A|missense_variant	FOXS1|p.T323M|1|0.4|ENSG00000179772|chr20:31844575-31844575|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.74749755859375	2	507.748616	1013.48268	1.1219	0.00056966	-1.8211	-0.00092467	-0.69919	-0.00035501	507.7476020350264	37.089	0.17274	37.089	37.027	37.2	0					7	5	2	0	0	0	0.60719	1	14483	14483		46.766	7.9603	1	197130			26664	11147	17968	18031	27015	27015					-0.023523095011000805
LYRSSQTV	8	Unmodified	_LYRSSQTV_					0	0	0			REV__nc|ENSG00000211753|A0A5B6|TRBV28	REV__nc|ENSG00000211753|A0A5B6|TRBV28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.255859375	2	477.256174	952.497795	-1.4912	-0.00071167	0.59342	0.00028321	-0.89775	-0.00042846	477.25651269894615	27.359	0.1777	27.359	27.272	27.449	0					14	6	3	0	0	0	0.37378	1	8700	8700		73.975	5.1879	1	311670	+		26665	21201	17969	18032	27016	27016					0.01964596892105419
LYRVIASHEG	10	Unmodified	_LYRVIASHEG_					0	0	0		USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.2097473144531	3	382.208495	1143.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.957	1	32.957	32.457	33.457	0								0	0	0	0.3805	1	12145	12145		36.447	2.2742	1				26666	1203	17970	18033	27017	27017					0.03759932737557392
LYSERLLQS	9	Unmodified	_LYSERLLQS_					0	0	0			REV__ENSG00000138347|ENST00000358913|MYPN	REV__ENSG00000138347|ENST00000358913|MYPN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8057250976562	2	554.803488	1107.59242	3.5849	0.0019889	0.083458	4.6303E-05	3.6683	0.0020352	554.8035116053824	41.399	0.30093	41.399	41.256	41.557	0					16	7	3	0	0	0	0.25716	1	16470	16470		54.776	1.8396	1	271420	+		26667	14970	17971	18034	27018	27018					0.04293110643448017
LYSFMFVIL	9	Oxidation (M)	_LYSFM(Oxidation (M))FVIL_		LYSFM(1)FVIL		LYSFM(44)FVIL	0	0	1			REV__SLC9A4|p.F354Sfs*2|1|0.05|ENSG00000180251|chr2:102505332-102505332|C/-|frameshift_variant	REV__SLC9A4|p.F354Sfs*2|1|0.05|ENSG00000180251|chr2:102505332-102505332|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.54144287109375	3	383.540195	1147.59875	3.2251	0.001237	0.32248	0.00012369	3.5476	0.0013607	383.54043852731644	30.806	0.85751	30.806	30.697	31.554	0					28	17	4	0	0	0	0.37197	1	11455	11455		44.117	6.6086	1	3015000	+		26668	16801	17972	18035	27019	27019		641			0.030859125506140117
LYSGKQLQ	8	Unmodified	_LYSGKQLQ_					0	0	0		ENST00000369170.4_1_10:120101412-120101460:-|nuORF	ENST00000369170.4_1_10:120101412-120101460:-|nuORF	ENST00000369170.4_1_10:120101412-120101460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.76043701171875	2	468.761092	935.507631	-2.163	-0.0010139	1.3104	0.00061428	-0.85253	-0.00039963	468.7615658618798	29.571	0.16538	29.571	29.489	29.655	0					6	4	2	0	0	0	0.57802	1	9972	9972		52.299	0.96372	1	145310			26669	8937	17973	18036	27020	27020					0.03729784897461741
LYSGSSHW	8	Unmodified	_LYSGSSHW_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2432556152344	2	468.714142	935.413731	-1.139	-0.00053386	0.42159	0.0001976	-0.7174	-0.00033625	468.71429476030147	28.963	1.8205	28.963	28.851	30.672	0					162	68	4	0	0	0	0.79882	1	9966	9966		19.36	0	1	6569400	+		26670	17387	17974	18037	27021	27021					-0.056559342048103645
LYSGSSHW	8	Unmodified	_LYSGSSHW_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7142639160156	2	468.714142	935.413731	0.56686	0.0002657	-1.2491	-0.00058545	-0.6822	-0.00031975	468.71361450918613	42.501	1.0339	42.501	41.816	42.85	0					38	28	2	0	0	0	0.74117	1	16902	16902		28.254	1.4582	1	52163	+		26671	17387	17974	18037	27022	27022					-0.056559342048103645
LYSHGSSVYF	10	Unmodified	_LYSHGSSVYF_					0	0	0			REV__ENST00000460092.2_1_X:110970875-110979982:+|nuORF	REV__ENST00000460092.2_1_X:110970875-110979982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.2747802734375	2	580.274564	1158.53457	0.69718	0.00040455	-0.65283	-0.00037882	0.04435	2.5735E-05	580.2740840107858	33.115	0.49577	33.115	32.798	33.294	0					33	21	2	0	0	0	0.61187	1	10687	10687		32.812	3.6629	1	85237	+		26672	19362	17975	18038	27023	27023					-0.03835151281987237
LYSLYKKY	8	Unmodified	_LYSLYKKY_					0	0	0		tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1	tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1	tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.3003540039062	2	539.302593	1076.59063	-1.4769	-0.00079652	-1.4027	-0.00075646	-2.8796	-0.001553	539.3017875677671	33.214	0.2386	33.214	33.111	33.35	0					20	7	4	0	0	0	0.46905	1	11605	11605		63.306	4.5243	1	761800			26673	22830	17976	18039	27024	27024					0.0554010162547911
LYSQATGVV	9	Unmodified	_LYSQATGVV_					0	0	0		TTLL5|p.V1126L|1|0.71|ENSG00000119685|chr14:75863716-75863716|G/T|missense_variant	TTLL5|p.V1126L|1|0.71|ENSG00000119685|chr14:75863716-75863716|G/T|missense_variant	TTLL5|p.V1126L|1|0.71|ENSG00000119685|chr14:75863716-75863716|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2532958984375	2	469.2531	936.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.617	1	33.617	33.117	34.117	0								0	0	0	0.2591	1	11294	11294		42.396	6.7778	1				26674	23077	17977	18040	27025	27025					0.020860786605908288
LYSTHCCQGR	10	2 Carbamidomethyl (C)	_LYSTHC(Carbamidomethyl (C))C(Carbamidomethyl (C))QGR_	LYSTHC(1)C(1)QGR		LYSTHC(59)C(59)QGR		0	2	0		ENST00000327367.8_1_15:67482938-67483019:+|nuORF	ENST00000327367.8_1_15:67482938-67483019:+|nuORF	ENST00000327367.8_1_15:67482938-67483019:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	641.2761840820312	2	641.276789	1280.53902	-0.81861	-0.00052496	-0.012446	-7.9815E-06	-0.83106	-0.00053294	641.2768241314291	19.335	0.36187	19.335	19.179	19.541	0					19	7	4	0	0	0	0.37692	1	5944	5944		58.782	7.4465	1	3999200			26675	8655	17978	18041	27026	27026	374;375				-0.09002333402372642
LYSVQNKV	8	Unmodified	_LYSVQNKV_					0	0	0		FAM118A|p.P252Q|1|0.04|ENSG00000100376|chr22:45332528-45332528|C/A|missense_variant	FAM118A|p.P252Q|1|0.04|ENSG00000100376|chr22:45332528-45332528|C/A|missense_variant	FAM118A|p.P252Q|1|0.04|ENSG00000100376|chr22:45332528-45332528|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7687683105469	2	475.768917	949.523281	0.62355	0.00029666	-1.0775	-0.00051263	-0.45394	-0.00021597	475.7686250666867	40.144	0.22127	40.144	40.079	40.301	0					11	8	2	0	0	0	0.5676	1	15821	15821		53.351	12.779	1	64858			26676	11125	17979	18042	27027	27027					0.04650071414528156
LYTKTWQL	8	Unmodified	_LYTKTWQL_					0	0	0		ENST00000466493.5_1_10:70100925-70105500:-|nuORF	ENST00000466493.5_1_10:70100925-70105500:-|nuORF	ENST00000466493.5_1_10:70100925-70105500:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7903442382812	2	526.792392	1051.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.953	1	30.953	30.453	31.453	0								0	0	0	1.7419	1	11624	11624		40.573	3.4135	1				26677	9786	17980	18043	27028	27028					0.046509309656585174
LYTLPSLR	8	Unmodified	_LYTLPSLR_					0	0	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7871398925781	2	481.78711	961.559667	-1.3317	-0.0006416	0.85605	0.00041243	-0.47566	-0.00022917	481.78765532986336	26.952	0.18814	26.952	26.866	27.054	0					10	6	2	0	0	0	0.65276	1	8535	8535		40.573	3.4135	1	57490			26678	6686	17981	18044	27029	27029					0.07734948311235712
LYTTVQTL	8	Unmodified	_LYTTVQTL_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7631530761719	2	469.7633	937.512048	0.013154	6.179E-06	-0.89668	-0.00042123	-0.88353	-0.00041505	469.7630325393287	32.622	0.1174	32.622	32.537	32.654	0					8	5	2	0	0	0	0.29286	1	10554	10554		84.916	2.6105	1	53245	+		26679	17142	17982	18045	27030	27030					0.0407924932038668
LYTVLLGYR	9	Unmodified	_LYTVLLGYR_					0	0	0		nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;MCF2|p.R820Kfs*12|1|0.54|ENSG00000101977|chrX:139587779-139587780|-/T|frameshift_variant;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911-6|MCF2	nc|ENSG00000101977|P10911-6|MCF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.548828125	3	366.54997	1096.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.296	1	16.296	15.796	16.796	0								0	0	0	0.37233	1	3833	3833		19.104	0	1				26680	2146	17983	18046	27031	27031					0.08363192891079052
LYTYKRTH	8	Unmodified	_LYTYKRTH_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.292724609375	2	541.293091	1080.57163	0.31128	0.00016849	-0.13752	-7.4439E-05	0.17376	9.4055E-05	541.2922710090284	25.678	0.16845	25.678	25.569	25.738	0					5	3	2	0	0	0	0.63077	1	9155	9155		44.117	12.587	1	71375			26681	3448	17984	18047	27032	27032					0.03456565054420935
LYVHHFYKV	9	Unmodified	_LYVHHFYKV_					0	0	0			REV__CFAP47|p.S508Y|2|0.07|ENSG00000165164|chrX:35966677-35966677|C/A|missense_variant	REV__CFAP47|p.S508Y|2|0.07|ENSG00000165164|chrX:35966677-35966677|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	603.3252563476562	2	603.326934	1204.63931	-0.59193	-0.00035713	-3.4821	-0.0021009	-4.0741	-0.002458	603.8257986159169	26.936	0.15808	26.936	26.866	27.024	0					7	5	2	0	0	0	0.2873	1	8523	8523		26.796	0	1	55966	+		26682	12440	17985	18048	27033	27033					0.04518014985228547
LYVIGGNHF	9	Unmodified	_LYVIGGNHF_					0	0	0		KLHL13|p.Y595Ifs*9|1|0.07|ENSG00000003096|chrX:117899094-117899094|C/-|frameshift_variant;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	KLHL13|p.Y595Ifs*9|1|0.07|ENSG00000003096|chrX:117899094-117899094|C/-|frameshift_variant	KLHL13|p.Y595Ifs*9|1|0.07|ENSG00000003096|chrX:117899094-117899094|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2676086425781	2	510.269084	1018.52362	-0.42048	-0.00021456	0.30186	0.00015403	-0.11862	-6.0526E-05	510.2693490866462	41.143	0.14904	41.143	41.071	41.22	0					8	5	2	0	0	0	0.21116	1	16176	16176		60.294	5.3994	1	47287			26683	933	17986	18049	27034	27034					0.015094911343794593
LYVNTCPGQ	9	Unmodified	_LYVNTCPGQ_					0	0	0		ENSG00000198917|ENST00000361256|SPOUT1	ENSG00000198917|ENST00000361256|SPOUT1	ENSG00000198917|ENST00000361256|SPOUT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7373962402344	2	497.73676	993.458967	0.18547	9.2317E-05	-0.23414	-0.00011654	-0.048664	-2.4222E-05	497.73670754798417	26.792	0.60387	26.792	26.557	27.161	0					29	20	2	0	0	0	0.4966	1	8111	8111		32.812	1.2335	1	126920			26684	7640	17987	18050	27035	27035					-0.038024517339295016
LYVNTQGLD	9	Unmodified	_LYVNTQGLD_					0	0	0		SHC2|p.A422T|2|0.36|ENSG00000129946|chr19:425142-425142|C/T|missense_variant;ENSG00000129946|ENST00000264554|SHC2	SHC2|p.A422T|2|0.36|ENSG00000129946|chr19:425142-425142|C/T|missense_variant	SHC2|p.A422T|2|0.36|ENSG00000129946|chr19:425142-425142|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7628173828125	2	511.761289	1021.50803	0.39927	0.00020433	4.0514	0.0020733	4.4507	0.0022777	511.7630469969921	30.845	0.2793	30.845	30.764	31.043	0					11	7	2	0	0	0	0.22377	1	10571	10571		58.782	3.2778	1	144860			26685	3613	17988	18051	27036	27036					-0.001868401733418068
LYVNTQGLD	9	Unmodified	_LYVNTQGLD_					0	0	0		SHC2|p.A422T|2|0.36|ENSG00000129946|chr19:425142-425142|C/T|missense_variant;ENSG00000129946|ENST00000264554|SHC2	SHC2|p.A422T|2|0.36|ENSG00000129946|chr19:425142-425142|C/T|missense_variant	SHC2|p.A422T|2|0.36|ENSG00000129946|chr19:425142-425142|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.764404296875	2	511.761289	1021.50803	1.4127	0.00072295	3.3192	0.0016986	4.7318	0.0024216	511.7627571220066	31.024	0.50674	31.024	30.913	31.42	0					31	10	5	0	0	0	0.027316	1	11562	11562		111.65	20.872	1	1143100			26686	3613	17988	18051	27037	27037					-0.001868401733418068
LYVTVVISA	9	Unmodified	_LYVTVVISA_					0	0	0		ENST00000484505.1_1_6:149718837-149718933:+|nuORF	ENST00000484505.1_1_6:149718837-149718933:+|nuORF	ENST00000484505.1_1_6:149718837-149718933:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.1936950683594	3	322.195304	963.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.472	1	26.472	25.972	26.972	0								0	0	0	0.37146	1	8528	8528		19.997	6.5427	1				26687	9994	17989	18052	27038	27038					0.08084412734126545
LYVWPQKED	9	Unmodified	_LYVWPQKED_					0	0	0			REV__PELI1|p.V299I|1|0.11|ENSG00000197329|chr2:64095064-64095064|C/T|missense_variant	REV__PELI1|p.V299I|1|0.11|ENSG00000197329|chr2:64095064-64095064|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.2977294921875	2	589.298039	1176.58152	0.1415	8.3386E-05	-0.71676	-0.00042238	-0.57526	-0.000339	589.2976245389824	28.91	0.54626	28.91	28.746	29.292	0					32	19	2	0	0	0	0.51817	1	9039	9039		30.504	2.4222	1	98417	+		26688	17326	17990	18053	27039	27039					0.00029708269130424014
LYYFEPILE	9	Unmodified	_LYYFEPILE_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA;REV__ENSG00000172915|ENST00000379939|NBEA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	593.8040771484375	2	593.805165	1185.59578	-1.8021	-0.0010701	-0.94484	-0.00056105	-2.7469	-0.0016311	593.8046425564969	36.064	0.3439	36.064	35.851	36.195	0					20	12	4	0	0	0	0.49003	1	12870	12870		33.516	6.7195	1	239570	+		26689	17409;16482	17991	18054	27040	27040					0.010403606974250579
LYYFTLHL	8	Unmodified	_LYYFTLHL_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2894287109375	2	535.289485	1068.56442	1.8834	0.0010082	0.31142	0.0001667	2.1948	0.0011749	535.2883751304043	42.563	0.37999	42.563	42.443	42.823	0					25	10	4	0	0	0	0.36926	1	16980	16980		74.517	13.545	1	405520	+		26690	13536	17992	18055	27041	27041					0.032878324539979076
LYYFTLHL	8	Unmodified	_LYYFTLHL_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2890625	2	535.289485	1068.56442	3.3654	0.0018015	1.5858	0.00084884	4.9511	0.0026503	535.2877662359668	42.573	0.31175	42.573	42.463	42.774	0					21	8	4	0	0	0	0.4723	1	16975	16975		62.978	1.2871	1	283290	+		26691	13536	17992	18055	27042	27042					0.032878324539979076
LYYLKQLP	8	Unmodified	_LYYLKQLP_					0	0	0			REV__CHST13|p.D57Y|1|0.4|ENSG00000180767|chr3:126536342-126536342|G/T|missense_variant	REV__CHST13|p.D57Y|1|0.4|ENSG00000180767|chr3:126536342-126536342|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.8043823242188	2	519.305136	1036.59572	-1.3711	-0.00071204	-1.836	-0.00095343	-3.2071	-0.0016655	519.3042187738778	27.697	0.5889	27.697	27.443	28.032	0					25	14	2	0	0	0	0.6282	1	9045	9045		44.531	7.372	1	217520	+		26692	12497	17993	18056	27043	27043					0.07888405488074568
LYYMKDLP	8	Oxidation (M)	_LYYM(Oxidation (M))KDLP_		LYYM(1)KDLP		LYYM(66)KDLP	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7667846679688	2	529.764986	1057.51542	2.3302	0.0012345	1.3266	0.00070278	3.6568	0.0019373	529.76569195673	19.529	0.14209	19.529	19.441	19.584	0					5	3	2	0	0	0	0.44433	1	5923	5923		65.803	7.9919	1	345520			26693	7942	17994	18057	27044	27044		323			-0.01103823897278744
MAAAAFAEK	9	Unmodified	_MAAAAFAEK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.228271484375	2	455.228571	908.442588	0.62674	0.00028531	-0.68531	-0.00031197	-0.058574	-2.6665E-05	455.22815509573707	26.317	0.15226	26.317	26.228	26.38	0					10	4	3	0	0	0	0.0406	1	7973	7973		98.629	26.009	1	143680			26694	2096	17995	18058	27045	27045					-0.015295329000309721
MAAAAFAEK	9	Unmodified	_MAAAAFAEK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2283020019531	2	455.228571	908.442588	0.26326	0.00011984	-1.1499	-0.00052347	-0.88664	-0.00040362	455.22812252182155	26.57	0.28025	26.57	26.465	26.745	0					15	6	4	0	0	0	0.023928	1	9184	9184		115.49	42.874	1	854470			26695	2096	17995	18058	27046	27046					-0.015295329000309721
MAAMPQTVY	9	Unmodified	_MAAMPQTVY_					0	0	0		nc|ENSG00000084070|Q8WU79-3|SMAP2;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2	nc|ENSG00000084070|Q8WU79-3|SMAP2	nc|ENSG00000084070|Q8WU79-3|SMAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.235107421875	2	506.235538	1010.45652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.657	1	40.657	40.157	41.157	0								0	0	0	0.28666	1	15504	15504		37.812	4.3185	1				26696	1707	17996	18059	27047	27047					-0.048286234632428204
MAAPAQPKK	9	Unmodified	_MAAPAQPKK_					0	0	0		ENSG00000021776|ENST00000156471|AQR;AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;AQR|p.F41Lfs*3|1|0.13|ENSG00000021776|chr15:34964243-34964243|A/-|frameshift_variant;AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2649230957031	2	471.265487	940.516422	-2.3512	-0.001108	1.4076	0.00066337	-0.94356	-0.00044467	471.26624297608953	35.813	0.35495	35.813	35.681	36.036	0					18	13	2	0	0	0	0.51817	1	12762	12762		30.504	2.2494	1	89756			26697	1107	17997	18060	27048	27048					0.04378435262299263
MAAPLAYPN	9	Unmodified	_MAAPLAYPN_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2344665527344	2	474.236396	946.458238	-1.6004	-0.00075898	-2.6243	-0.0012445	-4.2247	-0.0020035	474.23493249229944	38.006	0.16523	38.006	37.931	38.097	0					17	9	2	0	0	0	0.5392	1	12817	12817		28.254	0.37203	1	87528			26698	6404	17998	18061	27049	27049					-0.017132463829966582
MAASSSSLEKS	11	Unmodified	_MAASSSSLEKS_					0	0	0		ENSG00000196834|ENST00000451531|POTEI	ENSG00000196834|ENST00000451531|POTEI	ENSG00000196834|ENST00000451531|POTEI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2600708007812	2	549.260796	1096.50704	1.8363	0.0010086	-4.1473	-0.002278	-2.311	-0.0012694	549.2591972176942	36.975	0.20573	36.975	36.914	37.12	0					8	4	3	0	0	0	0.38515	1	14426	14426		53.089	5.4316	1	150140			26699	7397	17999	18062	27050	27050					-0.03735422604540872
MAAVVENVVK	10	Unmodified	_MAAVVENVVK_					0	0	0		ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2;ENST00000530993.5_1_11:65101357-65108506:+|nuORF	ENST00000444314.6_1_11:65101357-65109054:+|nuORF	ENST00000444314.6_1_11:65101357-65109054:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2993774414062	2	530.296985	1058.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.155	1	14.155	13.655	14.655	0								0	0	0	0.37293	1	3610	3610		38.754	2.3069	1				26700	3879	18000	18063	27051	27051					0.052469562596797914
MADENKNEY	9	Unmodified	_MADENKNEY_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.229736328125	2	557.229496	1112.44444	1.4238	0.00079338	-0.83323	-0.0004643	0.59057	0.00032908	557.2288559976479	19.865	0.11023	19.865	19.802	19.912	0					8	3	3	0	0	0	0.11411	1	5213	5213		76.17	19.449	1	131490			26701	4210	18001	18064	27052	27052					-0.1072856867272094
MADENKNEY	9	Unmodified	_MADENKNEY_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.2296752929688	2	557.229496	1112.44444	1.806	0.0010064	-1.2842	-0.00071558	0.52183	0.00029078	557.2288014962338	20.201	0.24564	20.201	20.11	20.356	0					13	5	4	0	0	0	0.085655	1	6220	6220		82.75	35.093	1	868300			26702	4210	18001	18064	27053	27053					-0.1072856867272094
MADENKNEY	9	Unmodified	_MADENKNEY_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2297973632812	2	557.229496	1112.44444	0.11788	6.5685E-05	0.48656	0.00027113	0.60444	0.00033681	557.2298347561938	19.879	0.14308	19.879	19.808	19.951	0					9	4	3	0	0	0	0.037569	1	5467	5467		101.6	38.294	1	199890			26703	4210	18001	18064	27054	27054					-0.1072856867272094
MADENKNEY	9	Unmodified	_MADENKNEY_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2296142578125	2	557.229496	1112.44444	1.7151	0.0009557	-1.5936	-0.00088802	0.12146	6.7679E-05	557.2287056449865	20.071	0.21716	20.071	19.961	20.178	0					10	4	3	0	0	0	0.026538	1	6462	6462		112.41	62.969	1	1390600			26704	4210	18001	18064	27055	27055					-0.1072856867272094
MADEVICSEI	10	Unmodified	_MADEVICSEI_					0	0	0		ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.2489013671875	2	555.2463	1108.47805	3.5698	0.0019821	1.0543	0.00058538	4.6241	0.0025675	555.2470517780046	11.916	0.1705	11.916	11.797	11.967	0					7	5	2	0	0	0	0.73697	1	2420	2420		15.642	4.1308	1	410780			26705	8037	18002	18065	27056	27056					-0.0718528322520342
MADPKGKAY	9	Unmodified	_MADPKGKAY_					0	0	0		ENST00000469050.1_1_9:7798575-7833931:-|nuORF;ENST00000484082.1_1_9:7798575-7800059:-|nuORF;ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7473449707031	2	490.747127	979.479702	1.3417	0.00065842	-0.84855	-0.00041642	0.49312	0.000242	490.74667944281083	17.797	0.12699	17.797	17.703	17.83	0					5	3	2	0	0	0	0.087861	1	4317	4317		82.241	36.268	1	56108			26706	4139	18003	18066	27057	27057					-0.010858613542723106
MADPKGKAY	9	Unmodified	_MADPKGKAY_					0	0	0		ENST00000469050.1_1_9:7798575-7833931:-|nuORF;ENST00000484082.1_1_9:7798575-7800059:-|nuORF;ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7469177246094	2	490.747127	979.479702	0.4553	0.00022344	-0.76533	-0.00037558	-0.31003	-0.00015215	490.7468992355483	18.058	0.19977	18.058	17.959	18.159	0					10	4	3	0	0	0	0.063823	1	5202	5202		90.37	37.018	1	532410			26707	4139	18003	18066	27058	27058					-0.010858613542723106
MADPKGKAY	9	Unmodified	_MADPKGKAY_					0	0	0		ENST00000469050.1_1_9:7798575-7833931:-|nuORF;ENST00000484082.1_1_9:7798575-7800059:-|nuORF;ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7470703125	2	490.747127	979.479702	-0.067026	-3.2893E-05	0.34449	0.00016906	0.27747	0.00013617	490.7473421766772	18.013	0.16745	18.013	17.904	18.072	0					5	3	2	0	0	0	0.13267	1	5468	5468		71.877	23.962	1	207310			26708	4139	18003	18066	27059	27059					-0.010858613542723106
MADPNIRFL	9	Unmodified	_MADPNIRFL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7822265625	2	538.781502	1075.54845	2.0477	0.0011033	0.4827	0.00026007	2.5304	0.0013633	538.7815128159501	44.646	0.21983	44.646	44.53	44.75	0					19	9	3	0	0	0	0.12834	1	17879	17879		72.879	35.851	1	110090			26709	7024	18004	18067	27060	27060					0.013698029454417338
MADPNIRFL	9	Unmodified	_MADPNIRFL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7819213867188	2	538.781502	1075.54845	3.3927	0.0018279	-2.3578	-0.0012703	1.0349	0.00055758	538.7802497035843	44.656	0.26526	44.656	44.55	44.815	0					22	11	2	0	0	0	0.35021	1	17870	17870		45.972	4.5456	1	210350			26710	7024	18004	18067	27061	27061					0.013698029454417338
MAEIDAWTTNE	11	Unmodified	_MAEIDAWTTNE_					0	0	0			REV__ENST00000592304.1_1_17:41323316-41327951:+|nuORF	REV__ENST00000592304.1_1_17:41323316-41327951:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	640.7770385742188	2	640.77681	1279.53907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.591	1	34.591	34.091	35.091	0								0	0	0	0.43542	1	11316	11316		29.17	4.6509	1		+		26711	17174	18005	18068	27062	27062					-0.08952054921383024
MAEILLFDF	9	Unmodified	_MAEILLFDF_					0	0	0			REV__ENSG00000134882|ENST00000403766|UBAC2	REV__ENSG00000134882|ENST00000403766|UBAC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.780517578125	2	549.780636	1097.54672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.592	1	15.592	15.092	16.092	0								0	0	0	0.40728	1	3421	3421		7.1934	0	1		+		26712	14768	18006	18069	27063	27063					0.001847491368152987
MAELGLEIP	9	Unmodified	_MAELGLEIP_					0	0	0		SIRT7|p.A332T|1|0.07|ENSG00000187531|chr17:81913784-81913784|C/T|missense_variant;ENST00000574153.1_1_17:79871648-79872097:-|nuORF;ENST00000574992.5_1_17:79871648-79872373:-|nuORF;ENST00000572976.5_1_17:79870294-79872532:-|nuORF;nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7	SIRT7|p.A332T|1|0.07|ENSG00000187531|chr17:81913784-81913784|C/T|missense_variant	SIRT7|p.A332T|1|0.07|ENSG00000187531|chr17:81913784-81913784|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7600402832031	2	486.757161	971.499769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.216	1	31.216	30.716	31.716	0								0	0	0	0.28996	1	10017	10017		37.159	5.2042	1				26713	7201	18007	18070	27064	27064					0.012878895856829331
MAETEERSL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MAETEERSL_					1	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2518920898438	2	554.252971	1106.49139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.068	1	36.068	35.568	36.568	0								0	0	0	0.21054	1	14021	14021		49.442	7.0454	1				26714	1860	18008	18071	27065	27065					-0.05759709121571177
MAFVNSVAK	9	Oxidation (M)	_M(Oxidation (M))AFVNSVAK_		M(1)AFVNSVAK		M(55)AFVNSVAK	0	0	1		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7579345703125	2	491.754953	981.495352	0.5804	0.00028542	4.3594	0.0021438	4.9398	0.0024292	491.75712258905514	37.123	0.17865	37.123	37.058	37.237	0					7	5	2	0	0	0	0.25716	1	14498	14498		54.776	15.523	1	101360			26715	1043	18009	18072	27066	27066		47			0.0038642516278741823
MAFWVVALI	9	Oxidation (M)	_M(Oxidation (M))AFWVVALI_		M(1)AFWVVALI		M(49)AFWVVALI	0	0	1			REV__ENSG00000185518|ENST00000394232|SV2B	REV__ENSG00000185518|ENST00000394232|SV2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2924194335938	2	533.293714	1064.57287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.732	1	36.732	36.232	37.232	0								0	0	0	0.21213	1	13151	13151		49.211	18.893	1		+		26716	17033	18010	18073	27067	27067		650			0.04317063098960716
MAGALNRK	8	Unmodified	_MAGALNRK_					0	0	0		CLEC18B|p.Y150Tfs*26|1|0.45|ENSG00000140839|chr16:74418067-74418067|A/-|frameshift_variant;CLEC18B|p.L224Sfs*11|1|0.12|ENSG00000140839|chr16:74413044-74413044|C/-|frameshift_variant;nc|ENSG00000157335|Q8NCF0-2|CLEC18C;ENST00000569201.6_1_16:70208088-70217386:+|nuORF;ENST00000564976.5_1_16:70208088-70217795:+|nuORF;ENSG00000157335|ENST00000541793|CLEC18C;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B;CLEC18C|p.P94Rfs*82|1|0.24|ENSG00000157335|chr16:70177302-70177302|C/-|frameshift_variant;nc|ENSG00000140839|Q6UXF7-2|CLEC18B;ENST00000569268.5_1_16:70208157-70217386:+|nuORF;ENSG00000157322|ENST00000288040|CLEC18A	CLEC18B|p.Y150Tfs*26|1|0.45|ENSG00000140839|chr16:74418067-74418067|A/-|frameshift_variant	CLEC18B|p.Y150Tfs*26|1|0.45|ENSG00000140839|chr16:74418067-74418067|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7420349121094	2	430.742179	859.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.411	1	19.411	18.911	19.911	0								0	0	0	1.7419	1	5995	5995		79.939	3.0926	1				26717	552	18011	18074	27068	27068					0.034449954310161957
MAGAMSTTAK	10	Unmodified	_MAGAMSTTAK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7304382324219	2	484.73062	967.446687	0.63825	0.00030938	-0.84605	-0.00041011	-0.2078	-0.00010073	484.7301395022143	19.364	0.15236	19.364	19.262	19.414	0					6	3	2	0	0	0	0.2978	1	5843	5843		67.494	8.7117	1	390790			26718	1706	18012	18075	27069	27069					-0.03833811468632575
MAGAMSTTAK	10	Unmodified	_MAGAMSTTAK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.73046875	2	484.73062	967.446687	-0.57784	-0.0002801	0.3819	0.00018512	-0.19594	-9.498E-05	484.73085383593246	19.253	0.16418	19.253	19.145	19.309	0					5	3	2	0	0	0	0.44601	1	5929	5929		51.193	14.164	1	385440			26719	1706	18012	18075	27070	27070					-0.03833811468632575
MAGHDQFQQ	9	Unmodified	_MAGHDQFQQ_					0	0	0		CREBBP|p.G2229D|1|0.35|ENSG00000005339|chr16:3728361-3728361|C/T|missense_variant	CREBBP|p.G2229D|1|0.35|ENSG00000005339|chr16:3728361-3728361|C/T|missense_variant	CREBBP|p.G2229D|1|0.35|ENSG00000005339|chr16:3728361-3728361|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.770263671875	2	531.227091	1060.43963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.845	1	13.845	13.345	14.345	0								0	0	0	0.35899	1	3464	3464		23.042	0	1				26720	690	18013	18076	27071	27071					-0.0881740802483364
MAGPPPST	8	Unmodified	_MAGPPPST_					0	0	0		ENSG00000107263|ENST00000683357|RAPGEF1	ENSG00000107263|ENST00000683357|RAPGEF1	ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.1810302734375	2	379.181089	756.347625	0.54829	0.0002079	-1.2036	-0.00045638	-0.65531	-0.00024848	379.1806230582045	46.942	0.13327	46.942	46.857	46.991	0					10	7	2	0	0	0	0.57802	1	17998	17998		52.299	5.5327	1	57157			26721	2475	18014	18077	27072	27072					-0.040294663712188594
MAHCLLRGE	9	Unmodified	_MAHCLLRGE_					0	0	0			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2501220703125	2	515.252054	1028.48956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.831	1	31.831	31.331	32.331	0								0	0	0	0.28666	1	10580	10580		37.812	2.1932	1		+		26722	16482	18015	18078	27073	27073					-0.023549966205337114
MAHLLIHTG	9	Unmodified	_MAHLLIHTG_					0	0	0		nc|ENSG00000167554|Q8N9Z0-2|ZNF610;ENSG00000167554|ENST00000403906|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.5176086425781	3	331.516383	991.527321	0.54294	0.00017999	3.0399	0.0010078	3.5828	0.0011878	331.5173735788702	14.015	0.16297	14.015	13.957	14.12	0					5	3	2	0	0	0	0.55282	1	3558	3558		19.997	0	1	306530			26723	6001	18016	18079	27074	27074					0.031218376365814038
MAHSFGESY	9	Unmodified	_MAHSFGESY_					0	0	0		TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant;nc|ENSG00000141524|Q7Z403-4|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF;nc|ENSG00000141524|Q7Z403-3|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENSG00000141524|ENST00000590602|TMC6	TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant;nc|ENSG00000141524|Q7Z403-3|TMC6	nc|ENSG00000141524|Q7Z403-3|TMC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.710693359375	2	514.710742	1027.40693	0.024595	1.2659E-05	0.12096	6.2259E-05	0.14555	7.4918E-05	514.710898019035	29.402	0.34084	29.402	29.273	29.614	0					18	8	3	0	0	0	0.05357	1	10482	10482		94.006	28.203	1	979760			26724	22543;4454	18017	18080	27075	27075					-0.1056761514767004
MAIDFKNAQ	9	Unmodified	_MAIDFKNAQ_					0	0	0			REV__tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1	REV__tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2569580078125	2	519.257859	1036.50117	1.3802	0.00071666	-3.6806	-0.0019112	-2.3005	-0.0011945	519.2559927573304	30.777	0.18567	30.777	30.703	30.889	0					8	3	3	0	0	0	0.27249	1	11152	11152		52.937	0	1	166290	+		26725	22046	18018	18081	27076	27076					-0.01562476325557327
MAIDLAAAK	9	Unmodified	_MAIDLAAAK_					0	0	0			REV__ENST00000512792.2_1_12:112191278-112193633:+|nuORF	REV__ENST00000512792.2_1_12:112191278-112193633:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2506408691406	2	452.252046	902.489538	-1.1936	-0.00053982	-2.4633	-0.001114	-3.6569	-0.0016538	452.25127615299095	34.241	0.22279	34.241	34.162	34.384	0					18	10	2	0	0	0	0.2873	1	11534	11534		51.335	3.4199	1	88991	+		26726	19888	18019	18082	27077	27077					0.03439326651096053
MAIEAQQKF	9	Unmodified	_MAIEAQQKF_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.27392578125	2	533.273509	1064.53247	1.7403	0.00092804	1.83	0.00097587	3.5702	0.0019039	533.2730210076692	31.853	0.58558	31.853	31.605	32.191	0					22	12	3	0	0	0	0.020674	1	12040	12040		120.87	33.172	1	610140			26727	9701	18020	18083	27078	27078					0.00278096708530029
MAIFWTTI	8	Oxidation (M)	_M(Oxidation (M))AIFWTTI_		M(1)AIFWTTI		M(83)AIFWTTI	0	0	1		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7565612792969	2	499.754421	997.494289	1.0771	0.00053827	-2.0458	-0.0010224	-0.96873	-0.00048413	499.75347556637126	30.569	0.65174	30.569	30.23	30.881	0					36	13	4	0	0	0	0.29779	1	11229	11229		83.287	11.991	1	3189000			26728	1462	18021	18084	27079	27079		66			-0.004557892061257007
MAIGIYVVAS	10	Unmodified	_MAIGIYVVAS_					0	0	0			REV__tr|U7STD6|U7STD6_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01373PE=3SV=1	REV__tr|U7STD6|U7STD6_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01373PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2811279296875	2	512.280803	1022.54705	-0.3176	-0.0001627	1.8354	0.00094023	1.5178	0.00077752	512.2818423964388	42.967	0.17177	42.967	42.893	43.065	0					25	10	3	0	0	0	0.40673	1	14101	14101		55.504	4.1688	1	194670	+		26729	21910	18022	18085	27080	27080					0.036681688566886805
MAKEILTKQ	9	Unmodified	_MAKEILTKQ_					0	0	0		tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.3033447265625	2	531.30481	1060.59507	-1.2346	-0.00065597	-1.1203	-0.00059521	-2.3549	-0.0012512	531.3042012297362	28.883	0.27435	28.883	28.737	29.012	0					11	6	2	0	0	0	0.41113	1	9650	9650		40.778	0	1	184920			26730	22793	18023	18086	27081	27081					0.06719242776716783
MALISVPW	8	Unmodified	_MALISVPW_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7528991699219	2	458.751682	915.48881	4.2973	0.0019714	-1.1582	-0.0005313	3.1392	0.0014401	458.7511766719871	30.403	0.1747	30.403	30.316	30.491	0					10	5	2	0	0	0	0.78146	1	9990	9990		23.037	0	1	46462			26731	2408	18024	18087	27082	27082					0.027685320020623294
MALLSGSEV	9	Unmodified	_MALLSGSEV_					0	0	0			REV__OR51B2|p.S163Ffs*27|1|0.38|ENSG00000279012|chr11:5323810-5323811|-/A|frameshift_variant	REV__OR51B2|p.S163Ffs*27|1|0.38|ENSG00000279012|chr11:5323810-5323811|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.7319030761719	2	453.733686	905.452819	-0.55298	-0.00025091	1.7361	0.00078774	1.1831	0.00053683	453.7320807325998	34.386	0.70481	34.386	33.947	34.652	0					41	18	3	0	0	0	0.26904	1	12842	12842		53.351	9.2347	1	310410	+		26732	17844	18025	18088	27083	27083					-0.003689699654501055
MALLVPLVY	9	Unmodified	_MALLVPLVY_					0	0	0		ENST00000533444.1_1_8:145150729-145152236:+|nuORF;ENSG00000179091|ENST00000318911|CYC1	ENST00000533444.1_1_8:145150729-145152236:+|nuORF	ENST00000533444.1_1_8:145150729-145152236:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.80474853515625	2	509.803914	1017.59328	1.3565	0.00069156	-0.93932	-0.00047887	0.4172	0.00021269	509.8033872187259	49.301	0.83297	49.301	49.161	49.994	0					61	39	2	0	0	0	0.60043	1	19488	19488		21.702	7.0382	1	87542			26733	6754	18026	18089	27084	27084					0.08518233758763927
MALMTVLF	8	Unmodified	_MALMTVLF_					0	0	0		PTGDR|p.L267M|1|0.17|ENSG00000168229|chr14:52268613-52268613|C/A|missense_variant	PTGDR|p.L267M|1|0.17|ENSG00000168229|chr14:52268613-52268613|C/A|missense_variant	PTGDR|p.L267M|1|0.17|ENSG00000168229|chr14:52268613-52268613|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2483215332031	2	463.247917	924.481282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.617	1	36.617	36.117	37.117	0								0	0	0	1.7419	1	14247	14247		35.201	0	1				26734	11983	18027	18090	27085	27085					0.016020564101268064
MALPRQGA	8	Unmodified	_MALPRQGA_					0	0	0			REV__ENST00000447014.5_2_2:111434178-111435602:-|nuORF	REV__ENST00000447014.5_2_2:111434178-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2287902832031	2	422.228905	842.443257	-0.031393	-1.3255E-05	-0.66206	-0.00027954	-0.69345	-0.00029279	422.22870943618545	24.431	0.26693	24.431	24.342	24.609	0					10	6	2	0	0	0	0.67475	1	7648	7648		37.028	1.8278	1	72463	+		26735	19283	18028	18091	27086	27086					0.01573306539683017
MALQETPPQ	9	Unmodified	_MALQETPPQ_					0	0	0		nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENSG00000159753|ENST00000334583|CARMIL2	nc|ENSG00000159753|Q6F5E8-2|CARMIL2	nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7498779296875	2	507.749867	1013.48518	0.092672	4.7054E-05	0.95662	0.00048573	1.0493	0.00053278	507.750085185877	19.647	0.21973	19.647	19.535	19.755	0					12	5	3	0	0	0	0.33044	1	5375	5375		47.657	4.7931	1	78744			26736	5330	18029	18092	27087	27087					-0.02102182562452981
MALQQILW	8	Unmodified	_MALQQILW_					0	0	0		ENST00000566814.1_1_22:26909701-26909914:+|nuORF	ENST00000566814.1_1_22:26909701-26909914:+|nuORF	ENST00000566814.1_1_22:26909701-26909914:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7767639160156	2	501.775688	1001.53682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.257	1	30.257	29.757	30.757	0								0	0	0	1.7419	1	10891	10891		52.299	2.2746	1				26737	10765	18030	18093	27088	27088					0.036116059221058094
MALSDNPH	8	Unmodified	_MALSDNPH_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7003479003906	2	442.700177	883.385802	0.054972	2.4336E-05	1.094	0.00048432	1.149	0.00050866	442.70055399055855	40.209	0.32241	40.209	40.068	40.391	0					17	12	2	0	0	0	0.65276	1	15826	15826		40.573	1.7665	1	72542	+		26738	14638	18031	18094	27089	27089					-0.06055580456552434
MALVRGAEPAA	11	Unmodified	_MALVRGAEPAA_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;RAB11FIP5|p.G488Vfs*25|2|0.3|ENSG00000135631|chr2:73088155-73088155|C/-|frameshift_variant;nc|ENSG00000135631|Q9BXF6|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2929077148438	2	543.292233	1084.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.759	1	34.759	34.259	35.259	0								0	0	0	0.4303	1	11735	11735		30.318	1.1682	1				26739	4009	18032	18095	27090	27090					0.031011879741527082
MALVRGAEPAA	11	Unmodified	_MALVRGAEPAA_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;RAB11FIP5|p.G488Vfs*25|2|0.3|ENSG00000135631|chr2:73088155-73088155|C/-|frameshift_variant;nc|ENSG00000135631|Q9BXF6|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.29296875	2	543.292233	1084.56991	-1.4901	-0.00080957	2.2228	0.0012076	0.7327	0.00039807	543.2937794907475	34.695	0.12199	34.695	34.595	34.717	0					6	3	2	0	0	0	0.72154	1	12307	12307		25.574	1.0549	1	30771			26740	4009	18032	18095	27091	27091					0.031011879741527082
MAMMVFPREEK	11	Unmodified	_MAMMVFPREEK_					0	0	0		nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000174996|ENST00000394067|KLC2	nc|ENSG00000174996|Q9H0B6-2|KLC2	nc|ENSG00000174996|Q9H0B6-2|KLC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	684.829345703125	2	684.827269	1367.63998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.484	1	33.484	32.984	33.984	0								0	0	0	0.40299	1	11756	11756		36.447	3.6343	1				26741	6527	18033	18096	27092	27092					-0.029130177438673854
MANADLVKY	9	Unmodified	_MANADLVKY_					0	0	0		FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7609252929688	2	512.760235	1023.50592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.289	1	33.289	32.789	33.789	0								0	0	0	0.10826	1	12297	12297		69.628	18.292	1				26742	4699	18034	18097	27093	27093					-0.004895921827824168
MANADLVKY	9	Unmodified	_MANADLVKY_					0	0	0		FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7601318359375	2	512.760235	1023.50592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.068	1	33.068	32.568	33.568	0								0	0	0	0.22075	1	11076	11076		47.96	8.7067	1				26743	4699	18034	18097	27094	27094					-0.004895921827824168
MANADLVKY	9	Unmodified	_MANADLVKY_					0	0	0		FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.760498046875	2	512.760235	1023.50592	1.2758	0.00065416	3.0594	0.0015688	4.3352	0.0022229	512.7596907809718	33.279	0.22545	33.279	33.176	33.402	0					13	5	3	0	0	0	0.18416	1	12730	12730		63.534	12.198	1	219260			26744	4699	18034	18097	27095	27095					-0.004895921827824168
MANCLPFY	8	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))ANC(Carbamidomethyl (C))LPFY_	MANC(1)LPFY	M(1)ANCLPFY	MANC(47)LPFY	M(47)ANCLPFY	0	1	1		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2207641601562	2	516.219888	1030.42522	1.328	0.00068552	1.061	0.00054768	2.3889	0.0012332	516.2205737695639	35.685	0.27189	35.685	35.497	35.769	0					14	9	2	0	0	0	0.61433	1	11705	11705		46.766	9.738	1	128330			26745	1358	18035	18098	27096	27096	49	63			-0.08877196497337536
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.2499694824219	2	463.249837	924.485122	0.10484	4.8569E-05	-0.41013	-0.00018999	-0.30529	-0.00014143	463.2496174438191	36.064	0.25989	36.064	35.981	36.241	0					25	12	3	0	0	0	0.011193	1	11816	11816		138.48	47.541	1	443750			26746	1957	18036	18099	27097	27097					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2500305175781	2	463.249837	924.485122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.382	1	36.382	35.882	36.882	0								0	0	0	0.053019	1	13717	13717		85.359	32.008	1				26747	1957	18036	18099	27098	27098					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2496032714844	2	463.249837	924.485122	0.64	0.00029648	-1.4422	-0.00066811	-0.80221	-0.00037163	463.24928754581214	36.353	0.51559	36.353	36.247	36.762	0					38	14	5	0	0	0	0.0038177	1	13695	13695		163.84	80.557	1	3013400			26748	1957	18036	18099	27099	27099					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2498779296875	2	463.249837	924.485122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.139	1	36.139	35.639	36.639	0								0	0	0	0.15865	1	12240	12240		57.811	7.7867	1				26749	1957	18036	18099	27100	27100					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2494201660156	2	463.249837	924.485122	-0.14395	-6.6685E-05	-0.75617	-0.00035029	-0.90012	-0.00041698	463.24970694556225	36.364	0.40926	36.364	36.254	36.663	0					28	11	4	0	0	0	0.0012464	1	14132	14132		180.49	97.207	1	1538700			26750	1957	18036	18099	27101	27101					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.24993896484375	2	463.249837	924.485122	-0.14486	-6.7106E-05	0.15903	7.367E-05	0.014168	6.5633E-06	463.2499040029501	36.112	0.2695	36.112	36.02	36.29	0					18	9	3	0	0	0	0.0038177	1	12905	12905		163.84	72.905	1	266800			26751	1957	18036	18099	27102	27102					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2496337890625	2	463.249837	924.485122	-0.34308	-0.00015893	-0.40406	-0.00018718	-0.74715	-0.00034612	463.2498265804169	36.132	0.26438	36.132	36.036	36.301	0					18	9	3	0	0	0	0.028654	1	12898	12898		110.34	50.043	1	274190			26752	1957	18036	18099	27103	27103					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.24951171875	2	463.249837	924.485122	-0.47621	-0.00022061	-0.27739	-0.0001285	-0.7536	-0.0003491	463.24983130007877	36.289	0.46377	36.289	36.132	36.596	0					31	9	5	0	0	0	0.0038177	1	14074	14074		163.84	85.9	1	2515000			26753	1957	18036	18099	27104	27104					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2493896484375	2	463.249837	924.485122	0.76142	0.00035273	-1.5471	-0.00071667	-0.78563	-0.00036394	463.24928612055925	36.274	0.51499	36.274	36.166	36.681	0					25	10	5	0	0	0	0.0038177	1	14071	14071		163.84	80.557	1	2944500			26754	1957	18036	18099	27105	27105					0.019858622282072247
MANGAVIHL	9	Oxidation (M)	_M(Oxidation (M))ANGAVIHL_		M(1)ANGAVIHL		M(140)ANGAVIHL	0	0	1		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.24713134765625	2	471.247295	940.480036	0.54357	0.00025616	-0.5025	-0.0002368	0.041069	1.9354E-05	471.24710138135	33.407	0.2146	33.407	33.31	33.525	0					9	5	2	0	0	0	0.011193	1	12338	12338		138.48	53.12	1	192430			26755	1957	18036	18100	27106	27106		91			0.00741558365587025
MANGAVIHL	9	Oxidation (M)	_M(Oxidation (M))ANGAVIHL_		M(1)ANGAVIHL		M(89)ANGAVIHL	0	0	1		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.24761962890625	2	471.247295	940.480036	3.8143	0.0017975	-3.0387	-0.001432	0.77557	0.00036548	471.2457486317766	33.185	0.12602	33.185	33.122	33.248	0					8	5	2	0	0	0	0.068692	1	11111	11111		88.643	19.856	1	31383			26756	1957	18036	18100	27107	27107		91			0.00741558365587025
MANGAVIHL	9	Oxidation (M)	_M(Oxidation (M))ANGAVIHL_		M(1)ANGAVIHL		M(71)ANGAVIHL	0	0	1		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.24713134765625	2	471.247295	940.480036	-0.12422	-5.8537E-05	-0.25524	-0.00012028	-0.37946	-0.00017882	471.2472946284776	33.364	0.27649	33.364	33.269	33.546	0					15	6	3	0	0	0	0.13483	1	12756	12756		71.378	23.462	1	315060			26757	1957	18036	18100	27108	27108		91			0.00741558365587025
MAPARLFAL	9	Oxidation (M)	_M(Oxidation (M))APARLFAL_		M(1)APARLFAL		M(66)APARLFAL	0	0	1		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2808837890625	2	503.281137	1004.54772	0.73828	0.00037156	0.11096	5.5846E-05	0.84925	0.00042741	503.28128563975406	44.063	0.25443	44.063	43.942	44.196	0					26	14	2	0	0	0	0.16524	1	16546	16546		65.803	28.775	1	160380			26758	3346	18037	18101	27109	27109		144			0.0456300829639531
MAPARLFAL	9	Oxidation (M)	_M(Oxidation (M))APARLFAL_		M(1)APARLFAL		M(56)APARLFAL	0	0	1		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2811279296875	2	503.281137	1004.54772	1.0019	0.00050424	-1.2729	-0.00064061	-0.27096	-0.00013637	503.2808670649052	44.074	0.29927	44.074	43.903	44.202	0					34	16	3	0	0	0	0.25109	1	17162	17162		55.504	7.5886	1	204250			26759	3346	18037	18101	27110	27110		144			0.0456300829639531
MAPARLFAL	9	Oxidation (M)	_M(Oxidation (M))APARLFAL_		M(1)APARLFAL		M(56)APARLFAL	0	0	1		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.28106689453125	2	503.281137	1004.54772	-0.44949	-0.00022622	0.69878	0.00035168	0.24929	0.00012546	503.281700503765	43.965	0.39293	43.965	43.813	44.206	0					30	15	3	0	0	0	0.25109	1	17589	17589		55.504	21.989	1	273950			26760	3346	18037	18101	27111	27111		144			0.0456300829639531
MAPENKVAD	9	Unmodified	_MAPENKVAD_					0	0	0		CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant	CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.73468017578125	2	487.734217	973.453881	-0.0081724	-3.986E-06	1.3871	0.00067656	1.379	0.00067257	487.7349629223501	22.52	0.10031	22.52	22.46	22.561	0					5	3	2	0	0	0	0.44593	1	6378	6378		37.812	6.2817	1	29614			26761	481	18038	18102	27112	27112					-0.033907555965583924
MAPERVASL	9	Unmodified	_MAPERVASL_					0	0	0		FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant;ENSG00000158169|ENST00000289081|FANCC	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.26025390625	2	487.260402	972.506251	-0.054942	-2.6771E-05	0.50485	0.00024599	0.4499	0.00021922	487.2606366813853	30.504	0.21872	30.504	30.4	30.618	0					13	8	2	0	0	0	0.41958	1	9715	9715		40.058	2.2467	1	352860			26762	5248	18039	18103	27113	27113					0.018898275370588635
MAPERVASL	9	Unmodified	_MAPERVASL_					0	0	0		FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant;ENSG00000158169|ENST00000289081|FANCC	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2601623535156	2	487.260402	972.506251	0.72639	0.00035394	-2.466	-0.0012016	-1.7396	-0.00084765	487.2600420234302	30.715	0.3614	30.715	30.566	30.928	0					28	8	5	0	0	0	0.14578	1	11128	11128		68.846	5.5399	1	1489600			26763	5248	18039	18103	27114	27114					0.018898275370588635
MAPERVASL	9	Unmodified	_MAPERVASL_					0	0	0		FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant;ENSG00000158169|ENST00000289081|FANCC	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.26025390625	2	487.260402	972.506251	-1.2441	-0.00060619	0.58004	0.00028263	-0.66403	-0.00032356	487.26074692819344	30.545	0.20561	30.545	30.445	30.651	0					11	7	2	0	0	0	0.28504	1	10045	10045		51.528	7.1506	1	232630			26764	5248	18039	18103	27115	27115					0.018898275370588635
MAPERVASL	9	Unmodified	_MAPERVASL_					0	0	0		FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant;ENSG00000158169|ENST00000289081|FANCC	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.26031494140625	2	487.260402	972.506251	0.63293	0.0003084	-0.72311	-0.00035234	-0.090176	-4.3939E-05	487.2600974835748	30.773	0.36235	30.773	30.546	30.909	0					12	8	2	0	0	0	0.15558	1	11532	11532		66.962	10.241	1	1498600			26765	5248	18039	18103	27116	27116					0.018898275370588635
MAPERVASL	9	Unmodified	_MAPERVASL_					0	0	0		FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant;ENSG00000158169|ENST00000289081|FANCC	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	FANCC|p.V449Cfs*22|1|0.07|ENSG00000158169|chr9:95107254-95107254|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2601318359375	2	487.260402	972.506251	-0.53769	-0.000262	0.16787	8.1796E-05	-0.36982	-0.0001802	487.26040062674446	30.739	0.36596	30.739	30.629	30.995	0					21	7	4	0	0	0	0.19952	1	11402	11402		61.691	14.034	1	1083100			26766	5248	18039	18103	27117	27117					0.018898275370588635
MAPLGNTPM	9	Unmodified	_MAPLGNTPM_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.22161865234375	2	466.222431	930.430309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.574	1	40.574	40.074	41.074	0								0	0	0	0.22284	1	15469	15469		47.657	8.6358	1				26767	2791	18040	18104	27118	27118					-0.03768892634730037
MAPLGNTPM	9	Unmodified	_MAPLGNTPM_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2225036621094	2	466.222431	930.430309	0.66528	0.00031017	-0.93051	-0.00043383	-0.26523	-0.00012366	466.22190689277966	40.393	0.83223	40.393	39.929	40.761	0					59	32	2	0	0	0	0.2873	1	15796	15796		51.335	12.529	1	189340			26768	2791	18040	18104	27119	27119					-0.03768892634730037
MAPLIRSIL	9	Unmodified	_MAPLIRSIL_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.3132629394531	2	507.312438	1012.61032	1.1142	0.00056526	0.73027	0.00037047	1.8445	0.00093573	507.31288030006857	42.835	0.28246	42.835	42.718	43.001	0					35	14	4	0	0	0	0.16002	1	16787	16787		66.429	0	1	650100			26769	8125	18041	18105	27120	27120					0.10452154364577382
MAPQKKGQ	8	Unmodified	_MAPQKKGQ_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2414245605469	2	444.242012	886.469472	0.43713	0.00019419	-1.4702	-0.00065311	-1.033	-0.00045892	444.24138797252573	24.143	0.20024	24.143	24.006	24.206	0					12	4	3	0	0	0	0.6282	1	7452	7452		44.531	0.41427	1	139050	+		26770	14320	18042	18106	27121	27121					0.02169575711161542
MAPYYEAL	8	Oxidation (M)	_M(Oxidation (M))APYYEAL_		M(1)APYYEAL		M(55)APYYEAL	0	0	1		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2210693359375	2	487.220411	972.426269	-0.33492	-0.00016318	2.0908	0.0010187	1.7559	0.00085549	487.2214099430212	22.599	0.26456	22.599	22.501	22.766	0					12	6	3	0	0	0	0.55361	1	7375	7375		54.765	6.8491	1	463600			26771	5586	18043	18107	27122	27122		227			-0.06104658856793321
MAQDCSKGIY	10	Unmodified	_MAQDCSKGIY_					0	0	0		KIF2B|p.T320M|1|0.07|ENSG00000141200|chr17:53823992-53823992|C/T|missense_variant	KIF2B|p.T320M|1|0.07|ENSG00000141200|chr17:53823992-53823992|C/T|missense_variant	KIF2B|p.T320M|1|0.07|ENSG00000141200|chr17:53823992-53823992|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.24951171875	2	558.246634	1114.47872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.038	1	39.038	38.538	39.538	0								0	0	0	0.40063	1	15340	15340		30.318	2.4355	1				26772	11256	18044	18108	27123	27123					-0.0739444378546068
MAQGIAIAQA	10	Unmodified	_MAQGIAIAQA_					0	0	0			REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2602844238281	2	487.260402	972.506251	-0.23119	-0.00011265	-0.15142	-7.378E-05	-0.38261	-0.00018643	487.26038112394826	30.547	0.16354	30.547	30.468	30.632	0					8	4	2	0	0	0	0.46215	1	10425	10425		49.442	8.0149	1	442500	+		26773	14095	18045	18109	27124	27124					0.018898275370588635
MAQIPGEPKK	10	Unmodified	_MAQIPGEPKK_					0	0	0			REV__BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	REV__BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8031616210938	2	549.802434	1097.59032	-1.4534	-0.00079908	1.9277	0.0010599	0.47431	0.00026078	549.8035736952099	15.26	0.17556	15.26	15.2	15.375	0					12	5	3	0	0	0	0.12896	1	3374	3374		90.37	2.1929	1	1323200	+		26774	12281	18046	18110	27125	27125					0.045423586339666144
MAQPSERIQT	10	Unmodified	_MAQPSERIQT_					0	0	0			REV__nc|ENSG00000168754|Q8IXR5-2|FAM178B	REV__nc|ENSG00000168754|Q8IXR5-2|FAM178B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.7904052734375	2	580.790055	1159.56556	1.5085	0.00087613	-2.008	-0.0011662	-0.49947	-0.00029009	580.7897127017728	35.473	0.26603	35.473	35.382	35.648	0					16	7	3	0	0	0	0.49411	1	13752	13752		45.972	0	1	195390	+		26775	16276	18047	18111	27126	27126					-0.007843212394163857
MAQYQEVNS	9	Unmodified	_MAQYQEVNS_					0	0	0			REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2322387695312	2	535.234581	1068.45461	-1.3574	-0.00072655	-3.2049	-0.0017154	-4.5623	-0.0024419	535.2327041805938	15.989	0.093349	15.989	15.933	16.026	0					6	3	2	0	0	0	0.19605	1	3689	3689		62.107	9.1707	1	122990	+		26776	13010	18048	18112	27127	27127					-0.07687960947509964
MARPLSLAA	9	Unmodified	_MARPLSLAA_					0	0	0		ENST00000542380.1_19:20607607-20607751:-|nuORF	ENST00000542380.1_19:20607607-20607751:-|nuORF	ENST00000542380.1_19:20607607-20607751:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2685546875	2	465.265487	928.516422	4.0806	0.0018985	2.035	0.00094682	6.1156	0.0028454	465.26664972284243	24.884	0.17242	24.884	24.784	24.956	0					8	5	2	0	0	0	0.45358	1	7667	7667		37.159	2.9866	1	77262			26777	10550	18049	18113	27128	27128					0.04930435262303945
MASAVEISSK	10	Unmodified	_MASAVEISSK_					0	0	0		MLH3|p.F228Lfs*27|1|0.31|ENSG00000119684|chr14:75048972-75048972|A/-|frameshift_variant;MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant;nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	MLH3|p.F228Lfs*27|1|0.31|ENSG00000119684|chr14:75048972-75048972|A/-|frameshift_variant	MLH3|p.F228Lfs*27|1|0.31|ENSG00000119684|chr14:75048972-75048972|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.760986328125	2	511.762975	1021.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.151	1	30.151	29.651	30.651	0								0	0	0	0.29806	1	11240	11240		51.193	0	1				26778	3128	18050	18114	27129	27129					0.0015008660902822157
MASLALLQ	8	Unmodified	_MASLALLQ_					0	0	0		nc|ENSG00000111237|Q9UBQ0-2|VPS29;ENSG00000111237|ENST00000549578|VPS29;ENST00000548259.1_1_12:110930799-110939856:-|nuORF	nc|ENSG00000111237|Q9UBQ0-2|VPS29	nc|ENSG00000111237|Q9UBQ0-2|VPS29	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.73992919921875	2	423.741314	845.468075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.922	1	12.922	12.422	13.422	0								0	0	0	1.7419	1	2824	2824		47.916	7.343	1				26779	2655	18051	18115	27130	27130					0.039159416224151755
MASRSMRL	8	2 Oxidation (M)	_M(Oxidation (M))ASRSM(Oxidation (M))RL_		M(1)ASRSM(1)RL		M(65)ASRSM(65)RL	0	0	2		chr1:119794685-119799725|262|21.08|0.25|6.41|-|ENST00000530654|REG4,REG4;nc|ENSG00000134193|Q9BYZ8-2|REG4;ENSG00000134193|ENST00000256585|REG4;chr1:119809202-119811409|246|19.99|0.24|6.4|-|ENST00000354219|REG4,REG4	chr1:119794685-119799725|262|21.08|0.25|6.41|-|ENST00000530654|REG4,REG4	chr1:119794685-119799725|262|21.08|0.25|6.41|-|ENST00000530654|REG4,REG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.242919921875	2	492.241686	982.46882	2.7277	0.0013427	-0.16195	-7.972E-05	2.5657	0.001263	492.2417442340552	26.477	0.37272	26.477	26.366	26.739	0					13	7	3	0	0	0	0.44767	1	9372	9372		65.465	65.465	1	1132500			26780	512	18052	18116	27131	27131		27;28			-0.023115870001902294
MASRTSSEM	9	Unmodified	_MASRTSSEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.21563720703125	2	500.215334	998.416116	0.35644	0.0001783	0.43611	0.00021815	0.79255	0.00039644	500.2156622169358	18.26	0.12661	18.26	18.209	18.336	0					9	5	2	0	0	0	0.020674	1	4519	4519		120.87	55.065	1	175050			26781	8070	18053	18117	27132	27132					-0.08315589853668826
MASRTSSEM	9	Unmodified	_MASRTSSEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.21514892578125	2	500.215334	998.416116	0.66281	0.00033155	-1.9331	-0.00096696	-1.2703	-0.00063541	500.2147394106818	18.563	0.18189	18.563	18.473	18.655	0					14	4	5	0	0	0	0.003936	1	5463	5463		163.15	80.846	1	1684300			26782	8070	18053	18117	27133	27133					-0.08315589853668826
MASRTSSEM	9	Unmodified	_MASRTSSEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.21514892578125	2	500.215334	998.416116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.541	1	18.541	18.041	19.041	0								0	0	0	0.069826	1	5708	5708		80.455	22.225	1				26783	8070	18053	18117	27134	27134					-0.08315589853668826
MASRTSSEM	9	Unmodified	_MASRTSSEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2162170410156	2	500.215334	998.416116	-0.43831	-0.00021925	1.4177	0.00070915	0.97939	0.0004899	500.21624830076667	18.354	0.11359	18.354	18.314	18.428	0					5	3	2	0	0	0	0.04067	1	4782	4782		98.582	28.954	1	153660			26784	8070	18053	18117	27135	27135					-0.08315589853668826
MASRTSSEM	9	Unmodified	_MASRTSSEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2149353027344	2	500.215334	998.416116	0.1572	7.8634E-05	-0.64229	-0.00032129	-0.48509	-0.00024265	500.2151915599683	18.375	0.085339	18.375	18.301	18.387	0					6	2	3	0	0	0	0.017421	1	4776	4776		126.24	38.546	1	121230			26785	8070	18053	18117	27136	27136					-0.08315589853668826
MASRTSSEM	9	Unmodified	_MASRTSSEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2154541015625	2	500.215334	998.416116	-0.66338	-0.00033183	-0.45558	-0.00022789	-1.119	-0.00055972	500.2153422890442	18.53	0.31444	18.53	18.421	18.736	0					11	6	3	0	0	0	0.0023831	1	5552	5552		172.25	70.648	1	1880400			26786	8070	18053	18117	27137	27137					-0.08315589853668826
MASRTSSEM	9	Unmodified	_MASRTSSEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2151794433594	2	500.215334	998.416116	1.0912	0.00054583	-2.1278	-0.0010643	-1.0366	-0.00051851	500.2146190812443	18.514	0.2163	18.514	18.404	18.621	0					10	4	4	0	0	0	0.022525	1	5566	5566		117.81	37.872	1	1908600			26787	8070	18053	18117	27138	27138					-0.08315589853668826
MASWRTGPNP	10	Unmodified	_MASWRTGPNP_					0	0	0		ENST00000344686.6_1_17:43341935-43342603:-|nuORF	ENST00000344686.6_1_17:43341935-43342603:-|nuORF	ENST00000344686.6_1_17:43341935-43342603:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7646484375	2	558.766383	1115.51821	-0.8238	-0.00046031	-1.6097	-0.00089942	-2.4335	-0.0013597	558.7654654580654	38.077	0.19109	38.077	38.005	38.196	0					18	10	2	0	0	0	0.63224	1	13618	13618		30.318	1.1477	1	96266			26788	8757	18054	18118	27139	27139					-0.03492555719753909
MATAQASPVI	10	Unmodified	_MATAQASPVI_					0	0	0		ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENST00000449567.6_1_11:24518651-24807587:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.75836181640625	2	494.760235	987.505917	-1.2639	-0.00062535	-3.5962	-0.0017793	-4.8601	-0.0024046	494.7583010593841	28.994	0.40715	28.994	28.88	29.287	0					25	16	2	0	0	0	0.50881	1	9393	9393		44.377	3.599	1	389280			26789	9638	18055	18119	27140	27140					0.01166407817208892
MATPARAP	8	Oxidation (M)	_M(Oxidation (M))ATPARAP_		M(1)ATPARAP		M(55)ATPARAP	0	0	1		nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.71343994140625	2	415.713088	829.411622	-1.4689	-0.00061065	1.1604	0.0004824	-0.3085	-0.00012825	415.71355189346264	20.329	0.11216	20.329	20.26	20.372	0					6	3	2	0	0	0	0.55361	1	5653	5653		54.765	6.8491	1	654140			26790	8478	18056	18120	27141	27141		340			-0.009906862142656792
MATPARAP	8	Oxidation (M)	_M(Oxidation (M))ATPARAP_		M(1)ATPARAP		M(55)ATPARAP	0	0	1		nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.71331787109375	2	415.713088	829.411622	-2.3506	-0.00097718	2.3035	0.00095759	-0.047124	-1.959E-05	415.7139381373275	20.391	0.26238	20.391	20.296	20.558	0					9	6	2	0	0	0	0.55361	1	5710	5710		54.765	6.8491	1	493340			26791	8478	18056	18120	27142	27142		340			-0.009906862142656792
MAVAAVRR	8	Unmodified	_MAVAAVRR_					0	0	0			REV__ENSG00000150990|ENST00000308736|DHX37	REV__ENSG00000150990|ENST00000308736|DHX37	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2563171386719	2	437.257997	872.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.446	1	31.446	30.946	31.946	0								0	0	0	1.7419	1	10421	10421		50.025	3.2581	1		+		26792	15459	18057	18121	27143	27143					0.06008988184964892
MAVEHPQG	8	Unmodified	_MAVEHPQG_					0	0	0		ENST00000589046.1_1_19:37342773-37367701:+|nuORF;ENST00000586933.5_1_19:37342773-37363470:+|nuORF;ENST00000586646.1_3_19:37342773-37353875:+|nuORF;ENST00000432005.6_1_19:37342773-37383818:+|nuORF;ENST00000529989.1_1_19:37342773-37383898:+|nuORF	ENST00000589046.1_1_19:37342773-37367701:+|nuORF	ENST00000589046.1_1_19:37342773-37367701:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.703369140625	2	434.70272	867.390887	-0.43582	-0.00018945	1.26	0.00054773	0.82419	0.00035828	434.70302029099156	40.689	0.27047	40.689	40.53	40.8	0					19	12	2	0	0	0	0.3961	1	15510	15510		71.296	2.811	1	114320			26793	9506	18058	18122	27144	27144					-0.048112765939322344
MAVGQVSSF	9	Unmodified	_MAVGQVSSF_					0	0	0		ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.22576904296875	2	463.226028	924.437503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.622	1	41.622	41.122	42.122	0								0	0	0	0.0066162	1	16568	16568		113.41	33.472	1				26794	12	18059	18123	27145	27145					-0.02773836762639803
MAVLLKFVS	9	Unmodified	_MAVLLKFVS_					0	0	0		ENST00000588824.1_1_18:12724471-12725527:+|nuORF;nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	ENST00000588824.1_1_18:12724471-12725527:+|nuORF	ENST00000588824.1_1_18:12724471-12725527:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.78924560546875	2	504.301539	1006.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.295	1	41.295	40.795	41.795	0								0	0	0	0.3428	1	14572	14572		26.693	13.734	1				26795	3561	18060	18124	27146	27146					0.08549349616021118
MAVRLIAEG	9	Unmodified	_MAVRLIAEG_					0	0	0		ENST00000484724.5_1_3:125872139-125877285:-|nuORF	ENST00000484724.5_1_3:125872139-125877285:-|nuORF	ENST00000484724.5_1_3:125872139-125877285:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2706604003906	2	480.27077	958.526987	0.67297	0.00032321	-0.7501	-0.00036025	-0.077125	-3.7041E-05	480.27046302670163	36.246	0.25322	36.246	36.141	36.394	0					13	7	2	0	0	0	0.22377	1	14115	14115		58.782	5.8453	1	291940			26796	10001	18061	18125	27147	27147					0.04606417916727423
MAVRLIAEG	9	Unmodified	_MAVRLIAEG_					0	0	0		ENST00000484724.5_1_3:125872139-125877285:-|nuORF	ENST00000484724.5_1_3:125872139-125877285:-|nuORF	ENST00000484724.5_1_3:125872139-125877285:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2705078125	2	480.27077	958.526987	0.93273	0.00044796	-0.75924	-0.00036464	0.17349	8.3323E-05	480.27025520249424	36.175	0.36343	36.175	36.064	36.428	0					10	7	2	0	0	0	0.41113	1	14044	14044		40.778	0.71999	1	316050			26797	10001	18061	18125	27148	27148					0.04606417916727423
MAYGHIDSY	9	Unmodified	_MAYGHIDSY_					0	0	0		ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	ENSG00000181191|ENST00000374571|PJA1	ENSG00000181191|ENST00000374571|PJA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.727294921875	2	528.726392	1055.43823	3.4618	0.0018303	-2.0809	-0.0011002	1.3809	0.0007301	528.725315387274	33.127	0.15626	33.127	33.076	33.232	0					5	3	2	0	0	0	0.077948	1	12576	12576		85.359	32.423	1	293760			26798	6842	18062	18126	27149	27149					-0.08727042113605421
MCASRPRAG	9	Oxidation (M)	_M(Oxidation (M))CASRPRAG_		M(1)CASRPRAG		M(46)CASRPRAG	0	0	1			REV__ENST00000289746.2_1_16:89256660-89256822:+|nuORF	REV__ENST00000289746.2_1_16:89256660-89256822:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7276611328125	2	482.726203	963.437854	2.4	0.0011585	0.14619	7.0567E-05	2.5462	0.0012291	482.7262625637687	12.291	0.093395	12.291	12.232	12.325	0					8	3	3	0	0	0	0.35045	1	2576	2576		45.952	12.436	1	185990	+		26799	18152	18063	18127	27150	27150		680			-0.04532740314436978
MCFHCVRNCV	10	Unmodified	_MCFHCVRNCV_					0	0	0		ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;nc|ENSG00000197653|Q8IVF4|DNAH10;DNAH10|p.P1206Lfs*12|1|0.08|ENSG00000197653|chr12:123819219-123819219|C/-|frameshift_variant;DNAH10|p.E1360*|1|0.18|ENSG00000197653|chr12:123830579-123830580|-/T|frameshift_variant;DNAH10|p.K1737Nfs*15|2|0.42|ENSG00000197653|chr12:123845799-123845799|A/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	606.7510986328125	2	606.250674	1210.48679	-0.52146	-0.00031613	-2.002	-0.0012137	-2.5234	-0.0015298	606.7511026112074	12.716	0.10457	12.716	12.653	12.758	0					8	3	3	0	0	0	0.76124	1	2740	2740		10.866	0.6003	1	190780			26800	7485	18064	18128	27151	27151					-0.11002911341347499
MCGTISVVKS	10	Unmodified	_MCGTISVVKS_					0	0	0		ENST00000605035.5_1_6:348606-348948:+|nuORF	ENST00000605035.5_1_6:348606-348948:+|nuORF	ENST00000605035.5_1_6:348606-348948:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7621459960938	2	512.76192	1023.50929	3.1434	0.0016118	2.3785	0.0012196	5.522	0.0028315	512.762268081541	35.23	0.56859	35.23	34.847	35.415	0					16	11	2	0	0	0	0.48965	1	13605	13605		46.457	0.48454	1	1336400			26801	11070	18065	18129	27152	27152					-0.001526654004237571
MCIEVLFLL	9	Unmodified	_MCIEVLFLL_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9;ADCY9|p.L286Cfs*19|1|0.23|ENSG00000162104|chr16:4114588-4114588|C/-|frameshift_variant;ADCY9|p.P366Qfs*18|1|0.03|ENSG00000162104|chr16:4114339-4114346|GTTCTTGG/-|frameshift_variant	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7958984375	2	540.795232	1079.57591	3.4957	0.0018904	-2.8086	-0.0015189	0.68712	0.00037159	540.7939638526848	40.29	0.32221	40.29	40.164	40.486	0					13	7	2	0	0	0	0.42902	1	15994	15994		31.955	31.955	1	260400			26802	5442	18066	18130	27153	27153					0.039305701614694044
MCIKFSSV	8	Oxidation (M)	_M(Oxidation (M))CIKFSSV_		M(1)CIKFSSV		M(42)CIKFSSV	0	0	1		ENST00000389737.4_2_4:8448277-8451409:+|nuORF;nc|ENSG00000155275|Q8IYL2-2|TRMT44	ENST00000389737.4_2_4:8448277-8451409:+|nuORF	ENST00000389737.4_2_4:8448277-8451409:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.72479248046875	2	465.724806	929.43506	-0.56952	-0.00026524	0.29778	0.00013868	-0.27174	-0.00012656	465.7249620707996	23.803	0.42248	23.803	23.514	23.937	0					23	10	3	0	0	0	0.64096	1	7243	7243		42.474	42.474	1	575270			26803	9135	18067	18131	27154	27154		367			-0.0324800849194844
MCISVKEGIA	10	Unmodified	_MCISVKEGIA_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7681274414062	2	525.769745	1049.52494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.101	1	34.101	33.601	34.601	0								0	0	0	0.29806	1	11131	11131		51.193	6.8155	1				26804	6025	18068	18132	27155	27155					0.0021562111662660755
MCKRPNSA	8	Unmodified	_MCKRPNSA_					0	0	0			REV__ENST00000460791.1_1_X:102337106-102338370:-|nuORF	REV__ENST00000460791.1_1_X:102337106-102338370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.71923828125	2	453.717847	905.421141	2.5118	0.0011396	0.57539	0.00026107	3.0872	0.0014007	453.71809286392363	24.405	0.3658	24.405	24.295	24.661	0					11	7	2	0	0	0	0.57802	1	8429	8429		52.299	52.299	1	1166000	+		26805	15337	18069	18133	27156	27156					-0.03535241200393102
MCLNEQNRI	9	Unmodified	_MCLNEQNRI_					0	0	0			REV__ENST00000434457.6_2_9:19360473-19369888:+|nuORF	REV__ENST00000434457.6_2_9:19360473-19369888:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.1795959472656	3	374.179443	1119.5165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.874	1	46.874	46.374	47.374	0								0	0	0	0.34228	1	17263	17263		26.693	9.9755	1		+		26806	19195	18070	18134	27157	27157					-0.03847932800022136
MCPFQVTLA	9	Unmodified	_MCPFQVTLA_					0	0	0		ENST00000367608.6_1_6:142688909-142691321:+|nuORF	ENST00000367608.6_1_6:142688909-142691321:+|nuORF	ENST00000367608.6_1_6:142688909-142691321:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2451477050781	2	505.245906	1008.47726	-1.9847	-0.0010028	0.86797	0.00043854	-1.1167	-0.00056423	505.24634614125205	33.026	0.37669	33.026	32.916	33.292	0					30	11	4	0	0	0	0.1115	1	11541	11541		76.774	2.7994	1	1067500			26807	8915	18071	18135	27158	27158					-0.02664033083567574
MCQRRQCE	8	Unmodified	_MCQRRQCE_					0	0	0		ENST00000443617.6_1_15:63937230-63937861:-|nuORF	ENST00000443617.6_1_15:63937230-63937861:-|nuORF	ENST00000443617.6_1_15:63937230-63937861:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.224609375	2	527.222971	1052.43139	3.4715	0.0018302	-0.65429	-0.00034495	2.8172	0.0014853	527.2227838609133	25.44	0.55561	25.44	25.281	25.837	0					33	9	6	0	0	0	0.52345	1	8892	8892		57.811	57.811	1	7571700			26808	9599	18072	18136	27159	27159					-0.09273001537462733
MCREVHVY	8	Oxidation (M)	_M(Oxidation (M))CREVHVY_		M(1)CREVHVY		M(60)CREVHVY	0	0	1		ENSG00000144057|ENST00000409382|ST6GAL2	ENSG00000144057|ENST00000409382|ST6GAL2	ENSG00000144057|ENST00000409382|ST6GAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7381591796875	2	526.736237	1051.45792	1.7619	0.00092805	1.8485	0.00097365	3.6103	0.0019017	526.7370820936384	40.47	0.4207	40.47	40.362	40.783	0					35	17	3	0	0	0	0.49887	1	15925	15925		60.294	17.819	1	489190			26809	4599	18073	18137	27160	27160		189			-0.06574989374485085
MCSLGDVDVN	10	Unmodified	_MCSLGDVDVN_					0	0	0		NEDD4L|p.G854S|1|0.25|ENSG00000049759|chr18:58389097-58389097|G/A|missense_variant	NEDD4L|p.G854S|1|0.25|ENSG00000049759|chr18:58389097-58389097|G/A|missense_variant	NEDD4L|p.G854S|1|0.25|ENSG00000049759|chr18:58389097-58389097|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7219848632812	2	526.722992	1051.43143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.049	1	31.049	30.549	31.549	0								0	0	0	0.27541	1	10254	10254		54.776	3.4409	1				26810	11850	18074	18138	27161	27161					-0.09222723056473114
MCVAVGSAALV	11	Unmodified	_MCVAVGSAALV_					0	0	0		nc|ENSG00000114646|O95196-3|CSPG5;ENSG00000114646|ENST00000264723|CSPG5;nc|ENSG00000114646|O95196|CSPG5	nc|ENSG00000114646|O95196-3|CSPG5	nc|ENSG00000114646|O95196-3|CSPG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.763916015625	2	510.764463	1019.51437	1.381	0.00070535	-2.893	-0.0014777	-1.512	-0.0007723	510.7631970365674	36.712	0.41814	36.712	36.513	36.931	0					6	3	2	0	0	0	0.33433	1	14306	14306		58.782	12.83	1	263980			26811	2859	18075	18139	27162	27162					0.005396384621803918
MCVLATELG	9	Carbamidomethyl (C)	_MC(Carbamidomethyl (C))VLATELG_	MC(1)VLATELG		MC(56)VLATELG		0	1	0			REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2432861328125	2	497.240821	992.467088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.06	1	37.06	36.56	37.56	0								0	0	0	0.16876	1	14473	14473		55.504	10.973	1		+		26812	20499	18076	18140	27163	27163	716				-0.029446408088006137
MCVLQIKM	8	Unmodified	_MCVLQIKM_					0	0	0			REV__ENSG00000133636|ENST00000256010|NTS	REV__ENSG00000133636|ENST00000256010|NTS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.25213623046875	2	483.252677	964.490801	-1.2788	-0.00061801	0.061107	2.953E-05	-1.2177	-0.00058848	483.2528299208676	29.668	0.22019	29.668	29.592	29.812	0					16	8	3	0	0	0	0.59411	1	9675	9675		50.025	3.2581	1	99856	+		26813	14714	18077	18141	27164	27164					0.00713501424002061
MDCPCNCDD	9	Unmodified	_MDCPCNCDD_					0	0	0			REV__MDFIC|p.D219V|1|0.11|ENSG00000135272|chr7:115015850-115015850|A/T|missense_variant	REV__MDFIC|p.D219V|1|0.11|ENSG00000135272|chr7:115015850-115015850|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.88543701171875	3	339.092318	1014.25512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.526	1	12.526	12.026	13.026	0								0	0	0	0.37786	1	2840	2840		17.468	4.014	1		+		26814	14791	18079	18142	27165	27165					-0.25143423553583943
MDEPKSGG	8	Unmodified	_MDEPKSGG_					0	0	0			REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	REV__HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.67926025390625	2	410.678911	819.343268	0.85015	0.00034914	-1.1505	-0.0004725	-0.30039	-0.00012336	410.67903445181327	48.232	0.11747	48.232	48.167	48.285	0					8	5	2	0	0	0	0.73426	1	19183	19183		29.15	4.6455	1	43486	+		26815	16488	18080	18143	27166	27166					-0.07362975584771903
MDFTAARL	8	Unmodified	_MDFTAARL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2356262207031	2	462.73402	923.453487	0.68171	0.00031545	-1.1321	-0.00052384	-0.45035	-0.00020839	462.7336543045461	40.669	0.20788	40.669	40.537	40.745	0					13	9	2	0	0	0	0.28444	1	15495	15495		87.696	32.192	1	60279			26816	2179	18081	18144	27167	27167					-0.011301305257461536
MDFTAARL	8	Unmodified	_MDFTAARL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7339172363281	2	462.73402	923.453487	0.71393	0.00033036	-1.4428	-0.00066764	-0.7289	-0.00033728	462.7333178714521	40.594	0.13104	40.594	40.519	40.65	0					9	5	2	0	0	0	0.32597	1	15993	15993		79.713	10.926	1	90713			26817	2179	18081	18144	27168	27168					-0.011301305257461536
MDFTAARL	8	Unmodified	_MDFTAARL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.73406982421875	2	462.73402	923.453487	-0.47044	-0.00021769	0.17279	7.9956E-05	-0.29765	-0.00013773	462.7342159758393	40.586	0.1533	40.586	40.453	40.606	0					5	3	2	0	0	0	0.42778	1	16123	16123		67.494	8.7117	1	73694			26818	2179	18081	18144	27169	27169					-0.011301305257461536
MDFTAARL	8	Unmodified	_MDFTAARL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.73370361328125	2	462.73402	923.453487	0.78409	0.00036283	-1.3708	-0.00063431	-0.58669	-0.00027148	462.7334507160389	40.541	0.27922	40.541	40.439	40.718	0					10	6	2	0	0	0	0.32597	1	16118	16118		79.713	16.406	1	174520			26819	2179	18081	18144	27170	27170					-0.011301305257461536
MDGFALGR	8	Unmodified	_MDGFALGR_					0	0	0		ECHDC2|p.G139R|1|0.24|ENSG00000121310|chr1:52906561-52906561|C/T|missense_variant	ECHDC2|p.G139R|1|0.24|ENSG00000121310|chr1:52906561-52906561|C/T|missense_variant	ECHDC2|p.G139R|1|0.24|ENSG00000121310|chr1:52906561-52906561|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.7135009765625	2	433.713088	865.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.645	1	39.645	39.145	40.145	0								0	0	0	1.7419	1	15102	15102		25.45	0	1				26820	875	18082	18145	27171	27171					-0.026466862142683567
MDIVVHTL	8	Unmodified	_MDIVVHTL_					0	0	0		VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant;ENST00000527586.1_1_11:134109936-134113358:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2523193359375	2	464.252046	926.489538	0.58055	0.00026952	-0.27533	-0.00012782	0.30522	0.0001417	464.25160736217947	40.567	0.16762	40.567	40.506	40.674	0					9	6	2	0	0	0	0.32815	1	15476	15476		79.451	19.157	1	52761			26821	4971	18083	18146	27172	27172					0.02335326651120795
MDIVVHTL	8	Unmodified	_MDIVVHTL_					0	0	0		VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant;ENST00000527586.1_1_11:134109936-134113358:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2513122558594	2	464.252046	926.489538	-0.14121	-6.5558E-05	-0.078278	-3.6341E-05	-0.21949	-0.0001019	464.25191512183267	40.557	0.1059	40.557	40.501	40.607	0					7	4	2	0	0	0	0.27512	1	15977	15977		90.777	32.965	1	34102			26822	4971	18083	18146	27173	27173					0.02335326651120795
MDIVVHTL	8	Unmodified	_MDIVVHTL_					0	0	0		VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant;ENST00000527586.1_1_11:134109936-134113358:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2517395019531	2	464.252046	926.489538	-0.48259	-0.00022404	-0.3074	-0.00014271	-0.78999	-0.00036676	464.25192211623244	40.512	0.23503	40.512	40.407	40.643	0					6	5	2	0	0	0	0.24425	1	16079	16079		111.65	34.802	1	87858			26823	4971	18083	18146	27174	27174					0.02335326651120795
MDIVVHTL	8	Unmodified	_MDIVVHTL_					0	0	0		VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant;ENST00000527586.1_1_11:134109936-134113358:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	VPS26B|p.E144K|1|0.33|ENSG00000151502|chr11:134240040-134240040|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2516174316406	2	464.252046	926.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.525	1	40.525	40.025	41.025	0								0	0	0	1.7419	1	16098	16098		51.335	8.861	1				26824	4971	18083	18146	27175	27175					0.02335326651120795
MDLGWLALL	9	Oxidation (M)	_M(Oxidation (M))DLGWLALL_		M(1)DLGWLALL		M(77)DLGWLALL	0	0	1		ENST00000475470.1_1_3:9882101-9883869:-|nuORF	ENST00000475470.1_1_3:9882101-9883869:-|nuORF	ENST00000475470.1_1_3:9882101-9883869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2818603515625	2	524.280803	1046.54705	1.1398	0.00059759	-1.6584	-0.00086949	-0.51861	-0.0002719	524.279734277224	34.164	0.26543	34.164	34.027	34.293	0					18	8	3	0	0	0	0.11118	1	12061	12061		76.847	11.381	1	215450			26825	9899	18084	18147	27176	27176		398			0.025641688566793164
MDLLSQELGP	10	Unmodified	_MDLLSQELGP_					0	0	0			REV__ENST00000546671.5_1_12:49317517-49318461:-|nuORF	REV__ENST00000546671.5_1_12:49317517-49318461:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.775390625	2	551.776082	1101.53761	1.3067	0.00072102	-3.2516	-0.0017942	-1.9449	-0.0010731	551.774251068065	29.103	0.087425	29.103	29.038	29.125	0					5	3	2	0	0	0	0.46128	1	9150	9150		49.536	0.094497	1	66009	+		26826	14735	18085	18148	27177	27177					-0.009096442194731935
MDMRVPAQL	9	Unmodified	_MDMRVPAQL_					0	0	0		nc|ENSG00000276566|P0DP09|IGKV1-13;nc|ENSG00000251546|P04432|IGKV1D-39;nc|ENSG00000250036|P0DSN7|IGKV1D-37;nc|ENSG00000244575|A0A075B6S5|IGKV1-27;nc|ENSG00000243466|P01602|IGKV1-5;nc|ENSG00000243290|A0A0C4DH73|IGKV1-12;nc|ENSG00000242766|A0A075B6S4|IGKV1D-17;nc|ENSG00000242076|P01594|IGKV1-33;nc|ENSG00000241755|A0A0C4DH69|IGKV1-9;nc|ENSG00000240382|P01599|IGKV1-17;nc|ENSG00000239855|A0A0C4DH72|IGKV1-6;nc|ENSG00000239819|A0A087WSZ0|IGKV1D-8;nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000276566|P0DP09|IGKV1-13	nc|ENSG00000276566|P0DP09|IGKV1-13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.765625	2	530.767537	1059.52052	1.7263	0.00091627	-2.5711	-0.0013646	-0.84477	-0.00044838	530.7660381485447	41.036	0.47784	41.036	40.694	41.172	0					20	15	2	0	0	0	0.24334	1	16128	16128		56.434	1.6691	1	204890			26827	11730	18086	18149	27178	27178					-0.006858433062916447
MDPQQVLQT	9	Unmodified	_MDPQQVLQT_					0	0	0			REV__ENSG00000165959|ENST00000298912|CLMN	REV__ENSG00000165959|ENST00000298912|CLMN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2610473632812	2	530.260599	1058.50665	2.3857	0.0012651	-0.59114	-0.00031346	1.7946	0.0009516	530.2602628345168	39.883	1.6138	39.883	39.131	40.745	0					160	63	3	0	0	0	0.56424	1	15052	15052		25.574	2.5316	1	485520	+		26828	16077	18087	18150	27179	27179					-0.020267975337446842
MDQACLLTM	9	Carbamidomethyl (C),Oxidation (M)	_MDQAC(Carbamidomethyl (C))LLTM(Oxidation (M))_	MDQAC(1)LLTM	MDQACLLTM(1)	MDQAC(57)LLTM	M(-56)DQACLLTM(56)	0	1	1			REV__nc|ENSG00000283063|P0DPF7|TRBV6-3	REV__nc|ENSG00000283063|P0DPF7|TRBV6-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.73681640625	2	549.735045	1097.45554	1.8257	0.0010037	0.82666	0.00045444	2.6524	0.0014581	549.7354016153788	47.901	0.97213	47.901	47.273	48.245	0					79	52	2	0	0	0	0.24095	1	19103	19103		56.721	6.6965	2	98127	+		26829	21230	18088	18151	27180	27180	732	764			-0.08929205894446568
MDRGAMVLT	9	Oxidation (M)	_MDRGAM(Oxidation (M))VLT_		MDRGAM(1)VLT		M(-57)DRGAM(57)VLT	0	0	1		FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant;ENSG00000100376|ENST00000441876|FAM118A;ENST00000477714.1_1_22:45706022-45724091:+|nuORF	FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant	FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2455139160156	2	505.243895	1008.47324	1.2312	0.00062204	1.1759	0.0005941	2.407	0.0012161	505.2445468478176	33.191	0.55892	33.191	33.091	33.65	0					29	11	4	0	0	0	0.15163	1	12581	12581		67.494	67.494	2	9566400			26830	2015	18089	18152	27181	27181		95			-0.03066122577297392
MDRTSVKEAY	10	Unmodified	_MDRTSVKEAY_					0	0	0			REV__ENST00000407121.1_1_6:100023791-100023977:+|nuORF	REV__ENST00000407121.1_1_6:100023791-100023977:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2904052734375	2	600.289888	1198.56522	0.97964	0.00058807	-0.57973	-0.000348	0.39991	0.00024006	600.2894805472325	38.143	3.2289	38.143	38.012	41.241	0					305	114	6	0	0	0	0.43008	1	15514	15514		52.937	0	1	32392000	+		26831	18978	18090	18153	27182	27182					-0.026117409592416152
MDSREHRPR	9	Oxidation (M)	_M(Oxidation (M))DSREHRPR_		M(1)DSREHRPR		M(48)DSREHRPR	0	0	1		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.290283203125	2	600.288545	1198.56254	2.1031	0.0012625	0.63298	0.00037997	2.7361	0.0016424	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.33044	1	15615	15615		47.657	47.657	1	67330000			26832	5128	18091	18154	27183	27183		208			-0.02880151573549483
MDSTEQTLE	9	Unmodified	_MDSTEQTLE_					0	0	0			REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2247924804688	2	527.223879	1052.43321	0.32973	0.00017384	1.2525	0.00066034	1.5822	0.00083418	527.2247062446829	25.256	0.32135	25.256	25.158	25.479	0					27	11	4	0	0	0	0.1115	1	7825	7825		76.774	4.5309	1	1112600	+		26833	17427	18092	18155	27184	27184					-0.09091390766866425
MDSTEQTLE	9	Unmodified	_MDSTEQTLE_					0	0	0			REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2247314453125	2	527.223879	1052.43321	1.6286	0.00085862	-0.52088	-0.00027462	1.1077	0.000584	527.2238315995949	25.421	0.85226	25.421	25.298	26.151	0					33	15	5	0	0	0	0.098791	1	8901	8901		79.713	2.9384	1	3669800	+		26834	17427	18092	18155	27185	27185					-0.09091390766866425
MDTDKLMVI	9	2 Oxidation (M)	_M(Oxidation (M))DTDKLM(Oxidation (M))VI_		M(1)DTDKLM(1)VI		M(110)DTDKLM(110)VI	0	0	2			REV__POTEH|p.L194H|1|0.04|ENSG00000198062|chr22:15690658-15690658|T/A|missense_variant	REV__POTEH|p.L194H|1|0.04|ENSG00000198062|chr22:15690658-15690658|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.267822265625	2	549.264493	1096.51443	3.7825	0.0020776	1.8983	0.0010426	5.6807	0.0031202	549.2654429903715	33.042	0.54166	33.042	32.84	33.382	0					24	11	3	0	0	0	0.025517	1	12525	12525		113.41	33.699	1	2175300	+		26835	17124	18093	18156	27186	27186		653;654			-0.029964063284523945
MDTHGYSTR	9	Unmodified	_MDTHGYSTR_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU;TRNAU1AP-PTPRU|3|fusion	TRNAU1AP-PTPRU|3|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2328491210938	2	534.232373	1066.45019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.996	1	14.996	14.496	15.496	0								0	0	0	0.33029	1	3778	3778		29.17	0.020503	1				26836	1319;23068	18094	18157	27187	27187					-0.08037425370434903
MDTLHMAL	8	Unmodified	_MDTLHMAL_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2223815917969	2	466.222431	930.430309	0.66528	0.00031017	-0.93051	-0.00043383	-0.26523	-0.00012366	466.22190689277966	40.393	0.83223	40.393	39.929	40.761	0					59	32	2	0	0	0	0.52345	1	15943	15943		57.811	0.35863	1	189340	+		26837	17396	18095	18158	27188	27188					-0.03768892634718668
MDVSVPKV	8	Unmodified	_MDVSVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7388916015625	2	437.738771	873.462989	0.70551	0.00030883	-1.5595	-0.00068265	-0.85398	-0.00037382	437.7381953757854	36.745	0.51975	36.745	36.35	36.869	0					22	15	2	0	0	0	0.53424	1	14327	14327		56.721	1.2168	1	97903			26838	3401	18096	18159	27189	27189					0.021196377597902938
MEAARRSL	8	Oxidation (M)	_M(Oxidation (M))EAARRSL_		M(1)EAARRSL		M(66)EAARRSL	0	0	1		SLAIN1|p.G311Rfs*4|1|0.24|ENSG00000139737|chr13:77746586-77746587|-/A|frameshift_variant;nc|ENSG00000139737|Q8ND83-4|SLAIN1;SLAIN1|p.T312Hfs*96|1|0.28|ENSG00000139737|chr13:77746587-77746587|A/-|frameshift_variant;SLAIN1|p.H465Afs*11|1|0.37|ENSG00000139737|chr13:77760867-77760868|-/G|frameshift_variant;nc|ENSG00000139737|Q8ND83|SLAIN1;ENSG00000139737|ENST00000418532|SLAIN1	SLAIN1|p.G311Rfs*4|1|0.24|ENSG00000139737|chr13:77746586-77746587|-/A|frameshift_variant	SLAIN1|p.G311Rfs*4|1|0.24|ENSG00000139737|chr13:77746586-77746587|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2496643066406	2	475.247826	948.481099	2.3171	0.0011012	3.3297	0.0015824	5.6468	0.0026836	475.2496069430897	33.002	0.94401	33.002	32.438	33.382	0					43	19	4	0	0	0	0.43813	1	12482	12482		66.429	8.618	1	1156800			26839	4350	18097	18160	27190	27190		178			0.004797727344907798
MEAHQVIKAN	10	Oxidation (M)	_M(Oxidation (M))EAHQVIKAN_		M(1)EAHQVIKAN		M(57)EAHQVIKAN	0	0	1		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.79541015625	2	578.792598	1155.57064	3.2584	0.001886	0.60593	0.00035071	3.8644	0.0022367	578.793046101917	48.114	0.22942	48.114	48.049	48.279	0					24	11	3	0	0	0	0.39566	1	19134	19134		56.721	15.943	1	326950			26840	964	18098	18161	27191	27191		44			-0.0009201737680086808
MEAPRRCP	8	Unmodified	_MEAPRRCP_					0	0	0			REV__ENST00000476746.5_1_2:198360008-198364584:-|nuORF	REV__ENST00000476746.5_1_2:198360008-198364584:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.228759765625	2	480.231122	958.44769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.282	1	39.282	38.782	39.782	0								0	0	0	1.7419	1	14950	14950		65.803	10.299	1		+		26841	19542	18099	18162	27192	27192					-0.03319552309062601
MEASPRLSK	9	Unmodified	_MEASPRLSK_					0	0	0			REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7713623046875	2	509.771134	1017.52771	1.1827	0.00060288	-0.28402	-0.00014479	0.89863	0.0004581	509.77096864619233	42.885	0.41677	42.885	42.736	43.153	0					49	20	3	0	0	0	0.44949	1	16795	16795		23.523	0	1	510010	+		26842	15925	18100	18163	27193	27193					0.01965212565778529
MEATRLAP	8	Unmodified	_MEATRLAP_					0	0	0			REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.73370361328125	2	444.73402	887.453487	-0.049997	-2.2235E-05	0.70937	0.00031548	0.65937	0.00029324	444.7339889449462	25.396	0.30894	25.396	25.303	25.612	0					10	7	2	0	0	0	0.28427	1	8661	8661		87.754	23.547	1	149120	+		26843	20604	18101	18164	27194	27194					0.005258694742337866
MEATRLAP	8	Unmodified	_MEATRLAP_					0	0	0			REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7339172363281	2	444.73402	887.453487	-0.20459	-9.0988E-05	-0.066868	-2.9739E-05	-0.27146	-0.00012073	444.7340027264682	25.367	0.16934	25.367	25.256	25.426	0					6	3	2	0	0	0	0.65148	1	9007	9007		40.778	5.1599	1	241010	+		26844	20604	18101	18164	27195	27195					0.005258694742337866
MEDEKQLS	8	Unmodified	_MEDEKQLS_					0	0	0			REV__nc|ENSG00000116580|Q3T8J9-3|GON4L	REV__nc|ENSG00000116580|Q3T8J9-3|GON4L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.22296142578125	2	490.223682	978.432811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.42	1	32.42	31.92	32.92	0								0	0	0	1.7419	1	11901	11901		53.351	3.9099	1		+		26845	14148	18102	18165	27196	27196					-0.057267656960675595
MEDIKFPRT	9	Unmodified	_MEDIKFPRT_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.79296875	2	568.792066	1135.56958	1.9619	0.0011159	-0.54858	-0.00031203	1.4133	0.00080387	568.7922691934523	36.135	0.12592	36.135	36.052	36.178	0					7	4	2	0	0	0	0.36892	1	14051	14051		44.377	3.599	1	71905			26846	3018	18103	18166	27197	27197					0.007217682542886905
MEDNKKNN	8	Unmodified	_MEDNKKNN_					0	0	0			REV__ENSG00000189252|ENST00000370503|SPANXN3	REV__ENSG00000189252|ENST00000370503|SPANXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.72686767578125	2	496.726923	991.439294	0.71723	0.00035627	-1.3922	-0.00069156	-0.675	-0.00033529	496.7266741717909	30.622	0.36126	30.622	30.487	30.848	0					15	8	3	0	0	0	0.49216	1	11072	11072		60.972	0.85368	1	177150	+		26847	17214	18104	18167	27198	27198					-0.05676827744696311
MEELKEIIQ	9	Unmodified	_MEELKEIIQ_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.20245361328125	3	378.20213	1131.58456	0.81222	0.00030718	0.58849	0.00022257	1.4007	0.00052975	378.20231306383215	17.306	0.094862	17.306	17.262	17.357	0					4	2	2	0	0	0	0.11898	1	4871	4871		75.043	4.2271	1	124170			26848	4519	18105	18168	27199	27199					0.02403215331651154
MEFGYSSNRP	10	Unmodified	_MEFGYSSNRP_					0	0	0		LRP6|p.S1508R|1|0.05|ENSG00000070018|chr12:12124590-12124590|T/G|missense_variant	LRP6|p.S1508R|1|0.05|ENSG00000070018|chr12:12124590-12124590|T/G|missense_variant	LRP6|p.S1508R|1|0.05|ENSG00000070018|chr12:12124590-12124590|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	396.5098876953125	3	396.509846	1186.50771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.221	1	18.221	17.721	18.721	0								0	0	0	0.4201	1	4722	4722		22.58	0	1				26849	11325	18106	18169	27200	27200					-0.07808583164819538
MEFQQHLKK	9	Unmodified	_MEFQQHLKK_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.21929931640625	3	396.877981	1187.61211	-0.63749	-0.00025301	2.2458	0.00089131	1.6083	0.00063831	397.21278014337355	16.9	0.16016	16.9	16.747	16.907	0					5	3	2	0	0	0	0.50858	1	4744	4744		31.53	1.2121	1	93943	+		26850	21128	18107	18170	27201	27201					0.025811633825242097
MEGDDIVN	8	Unmodified	_MEGDDIVN_					0	0	0		CLSTN2|p.G576V|1|0.29|ENSG00000158258|chr3:140556565-140556565|G/T|missense_variant	CLSTN2|p.G576V|1|0.29|ENSG00000158258|chr3:140556565-140556565|G/T|missense_variant	CLSTN2|p.G576V|1|0.29|ENSG00000158258|chr3:140556565-140556565|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.6895446777344	2	446.689475	891.364398	-0.14602	-6.5224E-05	-0.023993	-1.0718E-05	-0.17001	-7.5942E-05	446.68947567749467	30.403	0.24477	30.403	30.235	30.479	0					8	5	2	0	0	0	0.68432	1	11358	11358		35.618	3.6634	1	114580			26851	561	18108	18171	27202	27202					-0.08563010275918259
MEGKINKQL	9	Unmodified	_MEGKINKQL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000478941.1_1_2:203147084-203155055:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.794921875	2	530.794609	1059.57467	-0.09827	-5.2161E-05	1.3516	0.00071744	1.2534	0.00066527	530.7951277926045	21.101	0.13531	21.101	21.032	21.168	0					9	4	3	0	0	0	0.037712	1	6008	6008		95.815	16.103	1	132940			26852	1277	18109	18172	27203	27203					0.047260721169323006
MEGKINKQL	9	Unmodified	_MEGKINKQL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000478941.1_1_2:203147084-203155055:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7952270507812	2	530.794609	1059.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.342	1	21.342	20.842	21.842	0								0	0	0	0.043554	1	7063	7063		82.75	0	1				26853	1277	18109	18172	27204	27204					0.047260721169323006
MEGSRINN	8	Oxidation (M)	_M(Oxidation (M))EGSRINN_		M(1)EGSRINN		M(48)EGSRINN	0	0	1			REV__ENSG00000099949|ENST00000646124|LZTR1	REV__ENSG00000099949|ENST00000646124|LZTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7142028808594	2	468.713816	935.413079	0.62971	0.00029515	-0.66348	-0.00031098	-0.033769	-1.5828E-05	468.7135260936003	29.244	4.5868	29.244	29.104	33.69	0					235	103	5	0	0	0	0.60719	2	11137	11137;11354		47.916	12.297	1	27342000	+		26854	13504	18110	18173	27205;27206	27205		517			-0.057210969161587855
MEHAMETM	8	Unmodified	_MEHAMETM_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.1874084472656	2	490.187731	978.360909	0.59696	0.00029262	-1.9805	-0.0009708	-1.3835	-0.00067818	490.1871924128041	26.176	0.25902	26.176	26.067	26.326	0					17	5	4	0	0	0	0.25485	1	9348	9348		97.473	34.166	1	1370500			26855	7494	18111	18174	27207	27207					-0.12913719645791844
MEHAMETM	8	Unmodified	_MEHAMETM_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.1874694824219	2	490.187731	978.360909	-0.12197	-5.9786E-05	-0.3872	-0.0001898	-0.50916	-0.00024959	490.18759902861177	26.018	0.18782	26.018	25.905	26.093	0					7	4	2	0	0	0	0.41952	1	8321	8321		68.485	32.866	1	133340			26856	7494	18111	18174	27208	27208					-0.12913719645791844
MEHAMETM	8	Unmodified	_MEHAMETM_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.18768310546875	2	490.187731	978.360909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.016	1	26.016	25.516	26.516	0								0	0	0	1.7419	1	8315	8315		40.573	1.7665	1				26857	7494	18111	18174	27209	27209					-0.12913719645791844
MEHAMETM	8	Unmodified	_MEHAMETM_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.1878967285156	2	490.187731	978.360909	0.77339	0.00037911	-1.4578	-0.0007146	-0.68442	-0.00033549	490.1874227443095	26.142	0.26402	26.142	26.034	26.298	0					16	5	4	0	0	0	0.24915	1	9209	9209		102.77	31.478	1	1386400			26858	7494	18111	18174	27210	27210					-0.12913719645791844
MEHAMETM	8	Unmodified	_MEHAMETM_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.1875	2	490.187731	978.360909	2.6568	0.0013023	-3.5086	-0.0017199	-0.85183	-0.00041755	490.1862084995511	26.125	0.26443	26.125	26.017	26.282	0					12	5	3	0	0	0	0.3961	1	9203	9203		71.296	18.997	1	685850			26859	7494	18111	18174	27211	27211					-0.12913719645791844
MEHSKPVVL	9	Unmodified	_MEHSKPVVL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557024.1_1_14:64625447-64629048:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2838745117188	2	520.283877	1038.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.746	1	23.746	23.246	24.246	0								0	0	0	0.22075	1	8223	8223		47.96	0	1				26860	1272	18112	18175	27212	27212					0.035466870882146395
MEICNKKSF	9	Unmodified	_MEICNKKSF_					0	0	0			REV__ENST00000477909.5_1_3:101500888-101500975:+|nuORF	REV__ENST00000477909.5_1_3:101500888-101500975:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2696533203125	2	550.26737	1098.52019	3.7458	0.0020612	0.71825	0.00039523	4.4641	0.0024564	550.2679248294673	32.395	0.46716	32.395	32.287	32.754	0					22	9	3	0	0	0	0.15163	2	12221	12221;12246		67.494	67.494	1	1696900	+		26861	19556	18113	18176	27213;27214	27213					-0.025132630261396116
MEIPPRRR	8	Unmodified	_MEIPPRRR_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.801025390625	2	527.80056	1053.58657	0.27628	0.00014582	0.52805	0.00027871	0.80433	0.00042453	527.800584903375	39.586	0.12515	39.586	39.524	39.649	0					10	6	2	0	0	0	0.65276	1	13308	13308		40.573	3.4135	1	53496			26862	1238	18114	18177	27215	27215					0.06191733650757669
MEKERHRQH	9	Oxidation (M)	_M(Oxidation (M))EKERHRQH_		M(1)EKERHRQH		M(90)EKERHRQH	0	0	1		ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant;ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant;ARFGEF1|p.G612Vfs*2|1|0.33|ENSG00000066777|chr8:67266964-67266964|T/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	633.811279296875	2	633.809645	1265.60474	3.0725	0.0019474	-0.32066	-0.00020323	2.7518	0.0017441	633.8093734338743	34.855	1.0176	34.855	34.75	35.768	0					41	20	4	0	0	0	0.063823	1	13416	13416		90.37	35.594	1	941540			26863	193	18115	18178	27216	27216		12			-0.017441761651980414
MEKGDMVTL	9	Oxidation (M)	_M(Oxidation (M))EKGDMVTL_		M(0.991)EKGDM(0.009)VTL		M(20)EKGDM(-20)VTL	0	0	1		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.243896484375	2	520.24356	1038.47257	1.4366	0.00074737	-1.0895	-0.00056683	0.34703	0.00018054	520.2429841568782	32.187	0.29323	32.187	32.059	32.353	0					15	7	3	0	0	0	0.30841	1	11806	11806		49.536	8.7579	2	293920			26864	6903	18116	18179	27217	27217		280			-0.04512962016997335
MEKGDMVTL	9	Unmodified	_MEKGDMVTL_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2465209960938	2	512.246103	1022.47765	-0.30647	-0.00015699	-0.78313	-0.00040116	-1.0896	-0.00055814	512.2462876402282	34.468	0.33049	34.468	34.399	34.729	0					38	14	5	0	0	0	0.25761	1	11615	11615		54.722	1.3709	1	518960			26865	6903	18116	18180	27218	27218					-0.03268658154365767
MEKGDMVTL	9	Unmodified	_MEKGDMVTL_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2461547851562	2	512.246103	1022.47765	1.2569	0.00064385	-2.3705	-0.0012143	-1.1135	-0.00057041	512.2453854921542	34.692	0.54243	34.692	34.568	35.111	0					50	15	6	0	0	0	0.070005	1	13379	13379		88.177	3.0161	1	3319100			26866	6903	18116	18180	27219	27219					-0.03268658154365767
MEKGDMVTL	9	Unmodified	_MEKGDMVTL_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.24609375	2	512.246103	1022.47765	1.4245	0.0007297	-1.9931	-0.001021	-0.56861	-0.00029127	512.2454996979884	34.627	0.75417	34.627	34.277	35.032	0					35	15	6	0	0	0	0.076532	1	13283	13283		85.862	6.4108	1	3901400			26867	6903	18116	18180	27220	27220					-0.03268658154365767
MEKGDMVTL	9	Unmodified	_MEKGDMVTL_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.24658203125	2	512.246103	1022.47765	3.1295	0.0016031	-3.6444	-0.0018668	-0.51494	-0.00026377	512.2447961850694	34.616	0.40669	34.616	34.506	34.913	0					28	8	5	0	0	0	0.10506	1	13317	13317		78.264	6.9681	1	2115600			26868	6903	18116	18180	27221	27221					-0.03268658154365767
MEKIDAGAAF	10	Unmodified	_MEKIDAGAAF_					0	0	0			REV__ENSG00000127884|ENST00000368547|ECHS1	REV__ENSG00000127884|ENST00000368547|ECHS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7625122070312	2	526.757692	1051.50083	3.4643	0.0018248	3.9747	0.0020937	7.439	0.0039185	526.760649296635	36.403	0.36721	36.403	36.297	36.664	0					14	7	2	0	0	0	0.24256	1	14155	14155		74.255	10.949	1	548120	+		26869	14499	18117	18181	27222	27222					-0.022858960454186672
MEKIPVSAF	9	Unmodified	_MEKIPVSAF_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2745361328125	2	511.272978	1020.5314	1.2193	0.00062339	-0.29254	-0.00014957	0.92675	0.00047382	511.2729380060474	40.47	0.2595	40.47	40.391	40.65	0					18	10	2	0	0	0	0.12418	1	15942	15942		76.17	39.011	1	439130			26870	2445	18118	18182	27223	27223					0.02195882339651689
MEKIPVSAF	9	Unmodified	_MEKIPVSAF_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2728271484375	2	511.272978	1020.5314	3.082	0.0015758	-3.9917	-0.0020409	-0.9097	-0.00046511	511.2711058467486	40.432	0.67668	40.432	40.205	40.881	0					19	13	2	0	0	0	0.064446	1	16042	16042		83.647	1.4065	1	668520			26871	2445	18118	18182	27224	27224					0.02195882339651689
MEKIQPAL	8	Unmodified	_MEKIQPAL_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.26007080078125	2	465.259871	928.505189	-0.13819	-6.4296E-05	0.5303	0.00024673	0.3921	0.00018243	465.2602886595702	32.25	0.2435	32.25	32.142	32.385	0					9	5	2	0	0	0	0.32597	1	12249	12249		79.713	0.26157	1	123400			26872	3312	18119	18183	27225	27225					0.03807613168157786
MEKIQPAL	8	Unmodified	_MEKIQPAL_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2596130371094	2	465.259871	928.505189	-0.1674	-7.7883E-05	0.12005	5.5856E-05	-0.047343	-2.2027E-05	465.2597701237396	32.056	0.13411	32.056	31.967	32.101	0					5	3	2	0	0	0	0.39125	1	11117	11117		71.877	0.58177	1	95006			26873	3312	18119	18183	27226	27226					0.03807613168157786
MEKIQPAL	8	Unmodified	_MEKIQPAL_					0	0	0		ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000552341.5_1_12:53691573-53693126:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.25958251953125	2	465.259871	928.505189	-0.49097	-0.00022843	-0.24632	-0.0001146	-0.73729	-0.00034303	465.2598657856435	32.227	0.4197	32.227	31.918	32.338	0					14	8	3	0	0	0	0.23898	1	12139	12139		116.9	12.157	1	686270			26874	3312	18119	18183	27227	27227					0.03807613168157786
MEKPVSWI	8	Unmodified	_MEKPVSWI_					0	0	0		ENST00000256078.8_1_12:25380255-25380318:-|nuORF	ENST00000256078.8_1_12:25380255-25380318:-|nuORF	ENST00000256078.8_1_12:25380255-25380318:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2619323730469	2	495.259871	988.505189	1.4617	0.00072394	1.7574	0.00087037	3.2191	0.0015943	495.2608391811157	31.259	0.098063	31.259	31.212	31.31	0					8	4	2	0	0	0	0.79719	1	10035	10035		18.324	2.6826	1	60198			26875	8262	18120	18184	27228	27228					0.010476131681571133
MEKVLAGETL	10	Unmodified	_MEKVLAGETL_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.79541015625	2	545.794275	1089.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.771	1	35.771	35.271	36.271	0								0	0	0	0.31444	1	11727	11727		48.602	4.4848	1				26876	3594	18121	18185	27229	27229					0.0327923267720962
MEKVLAGETL	10	Unmodified	_MEKVLAGETL_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7951049804688	2	545.794275	1089.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.029	1	36.029	35.529	36.529	0								0	0	0	0.075756	1	13557	13557		84.817	11.938	1				26877	3594	18121	18185	27230	27230					0.0327923267720962
MEKVLAGETL	10	Unmodified	_MEKVLAGETL_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7944946289062	2	545.794275	1089.574	0.33214	0.00018128	0.94541	0.000516	1.2775	0.00069727	545.7955309882101	36.05	0.298	36.05	35.944	36.242	0					16	9	3	0	0	0	0.23114	1	14004	14004		75.652	10.187	1	285200			26878	3594	18121	18185	27231	27231					0.0327923267720962
MEKVLAGETL	10	Unmodified	_MEKVLAGETL_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7948608398438	2	545.794275	1089.574	3.755	0.0020495	1.1891	0.00064899	4.9441	0.0026984	545.7955960128103	36.095	0.66382	36.095	35.849	36.513	0					20	13	3	0	0	0	0.01554	1	13943	13943		128.35	29.335	1	626490			26879	3594	18121	18185	27232	27232					0.0327923267720962
MELAAKER	8	Unmodified	_MELAAKER_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2516784667969	2	474.252577	946.490601	-1.601	-0.00075928	1.1725	0.00055607	-0.4285	-0.00020322	474.2528503616385	36.243	0.16327	36.243	36.203	36.366	0					13	8	2	0	0	0	0.51384	1	12282	12282		58.782	0.97068	1	64005	+		26880	17628	18122	18186	27233	27233					0.015215410200198676
MELDRWGS	8	Unmodified	_MELDRWGS_					0	0	0		ENST00000577783.2_1_17:77079170-77080166:+|nuORF	ENST00000577783.2_1_17:77079170-77080166:+|nuORF	ENST00000577783.2_1_17:77079170-77080166:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2279052734375	2	497.226559	992.438566	-0.057737	-2.8709E-05	2.1962	0.001092	2.1385	0.0010633	497.2279602921002	26.11	0.19272	26.11	26.026	26.219	0					16	7	3	0	0	0	0.37378	1	7897	7897		73.975	2.0973	1	184290			26881	10844	18123	18187	27234	27234					-0.057956223937253526
MELLLVASP	9	Unmodified	_MELLLVASP_					0	0	0		ATP10D|p.S807L|1|0.45|ENSG00000145246|chr4:47558259-47558259|C/T|missense_variant	ATP10D|p.S807L|1|0.45|ENSG00000145246|chr4:47558259-47558259|C/T|missense_variant	ATP10D|p.S807L|1|0.45|ENSG00000145246|chr4:47558259-47558259|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7768249511719	2	486.775354	971.536154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.717	1	33.717	33.217	34.217	0								0	0	0	0.082437	1	12845	12845		76.774	7.9873	1				26882	252	18124	18188	27235	27235					0.049247664824065396
MELMDARQ	8	Unmodified	_MELMDARQ_					0	0	0			REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2281494140625	2	497.228245	992.441936	-0.30755	-0.00015292	-0.2119	-0.00010536	-0.51945	-0.00025828	497.22838255613306	26.404	0.26704	26.404	26.314	26.581	0					15	6	3	0	0	0	0.23367	1	9109	9109		120.62	5.162	1	1264700	+		26883	12817	18125	18189	27236	27236					-0.0545869561138943
MELMDARQ	8	Unmodified	_MELMDARQ_					0	0	0			REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.22821044921875	2	497.228245	992.441936	-0.7414	-0.00036865	-0.09712	-4.8291E-05	-0.83852	-0.00041694	497.2283622490275	26.401	0.21651	26.401	26.293	26.509	0					12	4	4	0	0	0	0.25143	1	9454	9454		98.629	1.1567	1	695790	+		26884	12817	18125	18189	27237	27237					-0.0545869561138943
MELMDGHLK	9	Unmodified	_MELMDGHLK_					0	0	0			REV__ENSG00000115825|ENST00000234179|PRKD3	REV__ENSG00000115825|ENST00000234179|PRKD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2587280273438	2	537.259545	1072.50454	-1.4247	-0.00076542	-1.1901	-0.00063942	-2.6148	-0.0014048	537.2590694548659	35.022	0.41772	35.022	34.884	35.302	0					36	13	5	0	0	0	0.45358	1	12401	12401		37.159	0.71236	1	1485400	+		26885	14126	18126	18190	27238	27238					-0.028815495432127136
MENAEQRKMEA	11	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))ENAEQRKMEA_		M(1)ENAEQRKMEA		M(44)ENAEQRKM(-44)EA	1	0	1		ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.5400085449219	3	465.539476	1393.5966	-0.13738	-6.3956E-05	-0.11299	-5.26E-05	-0.25037	-0.00011656	465.5394884644686	16.972	0.47175	16.972	16.863	17.334	0					18	9	2	0	0	0	0.49446	1	4949	4949		44.639	9.4612	2	6317100			26886	8964	18127	18191	27239	27239		357			-0.08445535987493713
MENAEQRKMEA	11	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))ENAEQRKMEA_		M(1)ENAEQRKMEA		M(61)ENAEQRKM(-61)EA	1	0	1		ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	697.8056640625	2	697.805576	1393.5966	0.27385	0.00019109	0.27388	0.00019112	0.54773	0.00038221	697.8057473334312	17.743	0.32965	17.743	17.64	17.969	0					21	7	4	0	0	0	0.30836	1	4481	4481		61.691	18.04	2	1498100			26887	8964	18127	18191	27240	27240		357			-0.08445535987493713
MENEMRTQL	9	Unmodified	_MENEMRTQL_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2630004882812	2	576.262816	1150.51108	1.6961	0.00097738	-1.6861	-0.00097165	0.0099525	5.7353E-06	576.2618681595189	30.286	0.21279	30.286	30.18	30.393	0					10	4	3	0	0	0	0.037098	1	11207	11207		102.06	31.245	1	413970			26888	3774	18128	18192	27241	27241					-0.058156563824695695
MEPDTMGMSIL	11	Unmodified	_MEPDTMGMSIL_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.7688598632812	2	612.769085	1223.52362	0.41034	0.00025144	-0.32301	-0.00019793	0.087326	5.3511E-05	612.7685439591862	13.009	0.22842	13.009	12.915	13.144	0					6	5	2	0	0	0	0.7326	1	3073	3073		24.519	1.4767	1	954410	+		26889	16376	18129	18193	27242	27242					-0.07920381034432467
MEPGNNPIF	9	Unmodified	_MEPGNNPIF_					0	0	0		BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant;BCL9|p.P1111Lfs*3|1|0.39|ENSG00000116128|chr1:147624005-147624005|G/-|frameshift_variant;BCL9|p.Q1162Rfs*115|2|0.28|ENSG00000116128|chr1:147624156-147624156|G/-|frameshift_variant;BCL9|p.Q1139Rfs*138|1|0.37|ENSG00000116128|chr1:147624089-147624089|C/-|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9;BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant	BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.73712158203125	2	509.73676	1017.45897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.204	1	36.204	35.704	36.704	0								0	0	0	0.3428	1	13637	13637		26.693	1.1189	1				26890	291	18130	18194	27243	27243					-0.04906451733927497
MEPRNEIY	8	Unmodified	_MEPRNEIY_					0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1	REV__ENSG00000115504|ENST00000431489|EHBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.24609375	2	526.247492	1050.48043	-1.2231	-0.00064364	-1.0728	-0.00056455	-2.2959	-0.0012082	526.2469335540479	33.15	0.27224	33.15	33.057	33.33	0					24	8	4	0	0	0	0.65276	1	11591	11591		40.573	3.4135	1	556540	+		26891	14113	18131	18195	27244	27244					-0.042790667052031495
MEQIPAFAK	9	Unmodified	_MEQIPAFAK_					0	0	0			REV__ENSG00000056050|ENST00000393381|HPF1	REV__ENSG00000056050|ENST00000393381|HPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7703247070312	2	517.770603	1033.52665	1.2366	0.0006403	-0.20615	-0.00010674	1.0305	0.00053356	517.7705036243068	33.312	0.21223	33.312	33.192	33.404	0					11	6	2	0	0	0	0.56424	1	11650	11650		25.574	1.3713	1	178130	+		26892	13058	18132	18196	27245	27245					0.011229981968654101
MERIMKAQAL	10	Unmodified	_MERIMKAQAL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	595.8223876953125	2	595.822844	1189.63113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.18	1	28.18	27.68	28.68	0								0	0	0	0.40415	1	8774	8774		30.569	11.306	1				26893	1647;1916	18133	18197	27246	27246					0.04390376681953967
MERIMKAQAL	10	Unmodified	_MERIMKAQAL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.8229370117188	2	595.822844	1189.63113	0.74461	0.00044365	-1.0669	-0.00063566	-0.32226	-0.00019201	595.8223773853485	28.409	0.28438	28.409	28.291	28.575	0					19	7	4	0	0	0	0.11137	1	10047	10047		81.525	0	1	666210			26894	1647;1916	18133	18197	27247	27247					0.04390376681953967
MERIMKAQAL	10	Unmodified	_MERIMKAQAL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	595.8233642578125	2	595.822844	1189.63113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.206	1	28.206	27.706	28.706	0								0	0	0	0.37672	1	9070	9070		32.751	17.886	1				26895	1647;1916	18133	18197	27248	27248					0.04390376681953967
MERIMKAQAL	10	Unmodified	_MERIMKAQAL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.8230590820312	2	595.822844	1189.63113	1.4554	0.00086714	-2.0408	-0.001216	-0.58542	-0.00034881	595.8221060613889	28.393	0.1675	28.393	28.331	28.499	0					10	3	4	0	0	0	0.0331	1	10407	10407		104.42	27.106	1	405150			26896	1647;1916	18133	18197	27249	27249					0.04390376681953967
MERIMKAQAL	10	Unmodified	_MERIMKAQAL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.8233642578125	2	595.822844	1189.63113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.241	1	28.241	27.741	28.741	0								0	0	0	0.23291	1	9347	9347		47.96	12.807	1				26897	1647;1916	18133	18197	27250	27250					0.04390376681953967
MERIMKAQAL	10	Unmodified	_MERIMKAQAL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.822998046875	2	595.822844	1189.63113	0.068381	4.0743E-05	-0.38862	-0.00023155	-0.32024	-0.00019081	595.8229317117983	28.367	0.2166	28.367	28.261	28.478	0					13	4	4	0	0	0	0.099683	1	10260	10260		83.647	30.71	1	840450			26898	1647;1916	18133	18197	27251	27251					0.04390376681953967
MERKDHEI	8	Oxidation (M)	_M(Oxidation (M))ERKDHEI_		M(1)ERKDHEI		M(66)ERKDHEI	0	0	1			REV__RAP1GDS1|p.F245V|1|0.39|ENSG00000138698|chr4:98404572-98404572|T/G|missense_variant	REV__RAP1GDS1|p.F245V|1|0.39|ENSG00000138698|chr4:98404572-98404572|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.25830078125	2	537.255848	1072.49714	3.3422	0.0017956	0.5703	0.0003064	3.9125	0.002102	537.256281124999	35.153	0.87382	35.153	34.847	35.721	0					43	17	3	0	0	0	0.43813	1	13512	13512		66.429	7.6473	1	18003000	+		26899	14997	18134	18198	27252	27252		569			-0.036205658192557166
MERLVMTKL	9	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))ERLVM(Oxidation (M))TKL_		M(1)ERLVM(1)TKL		M(73)ERLVM(73)TKL	1	0	2		ENST00000521971.5_1_8:104432683-104438302:+|nuORF	ENST00000521971.5_1_8:104432683-104438302:+|nuORF	ENST00000521971.5_1_8:104432683-104438302:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.87890625	3	398.878882	1193.61482	-0.62206	-0.00024813	-0.47844	-0.00019084	-1.1005	-0.00043897	398.87870805499244	28.269	0.36583	28.269	28.16	28.526	0					12	7	3	0	0	0	0.12834	1	10234	10234		72.879	7.722	1	466010			26900	10325	18135	18199	27253	27253		413;414			0.02575250725180922
MERQSHDY	8	Unmodified	_MERQSHDY_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2245483398438	2	533.224548	1064.43454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.995	1	20.995	20.495	21.495	0								0	0	0	1.7419	1	6007	6007		37.159	2.9866	1				26901	2047	18136	18200	27254	27254					-0.09509711887449157
MESETRRH	8	Oxidation (M)	_M(Oxidation (M))ESETRRH_		M(1)ESETRRH		M(61)ESETRRH	0	0	1			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2382202148438	2	531.243272	1060.47199	1.7214	0.00091449	-1.4065	-0.00074717	0.31496	0.00016732	531.2424419802976	29.514	1.2246	29.514	29.239	30.464	0					66	26	4	0	0	0	0.49216	1	10859	10859		60.972	9.6365	1	18866000	+		26902	16678	18137	18201	27255	27255		636			-0.05582620621839851
MESLQPAAEV	10	Unmodified	_MESLQPAAEV_					0	0	0			REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7618408203125	2	537.760432	1073.50631	2.0717	0.0011141	0.58768	0.00031603	2.6594	0.0014301	537.7615580896614	38.658	0.18753	38.658	38.53	38.717	0					20	8	4	0	0	0	0.38194	1	14684	14684		58.23	1.5977	1	232520	+		26903	17467	18138	18202	27256	27256					-0.027502172536060243
MESLVVSW	8	Unmodified	_MESLVVSW_					0	0	0		IGDCC4|p.L859*|1|0.23|ENSG00000103742|chr15:65388940-65388940|G/-|frameshift_variant;IGDCC4|p.T872Qfs*11|3|0.3|ENSG00000103742|chr15:65388902-65388902|G/-|frameshift_variant;ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;IGDCC4|p.G997Rfs*74|1|0.33|ENSG00000103742|chr15:65386022-65386023|-/CG|frameshift_variant;ENSG00000103742|ENST00000352385|IGDCC4	IGDCC4|p.L859*|1|0.23|ENSG00000103742|chr15:65388940-65388940|G/-|frameshift_variant	IGDCC4|p.L859*|1|0.23|ENSG00000103742|chr15:65388940-65388940|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7373962402344	2	475.736228	949.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.909	1	39.909	39.409	40.409	0								0	0	0	1.7419	1	15205	15205		57.811	0	1				26904	2259	18139	18203	27257	27257					-0.01884666102830579
METALHLA	8	Unmodified	_METALHLA_					0	0	0			REV__ENST00000473400.1_1_10:104160383-104160916:+|nuORF	REV__ENST00000473400.1_1_10:104160383-104160916:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2285461425781	2	443.228571	884.442588	-0.10814	-4.793E-05	-0.28372	-0.00012575	-0.39186	-0.00017368	443.22883617892353	36.317	0.14709	36.317	36.222	36.369	0					6	4	2	0	0	0	0.55361	1	13691	13691		54.765	12.29	1	36798	+		26905	13255	18140	18204	27258	27258					-0.004255329000329766
METEENPKVL	10	Oxidation (M)	_M(Oxidation (M))ETEENPKVL_		M(1)ETEENPKVL		M(88)ETEENPKVL	0	0	1		ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	603.2899780273438	2	603.289553	1204.56455	3.0495	0.0018398	1.8441	0.0011125	4.8936	0.0029523	603.2880271399125	42.546	0.4631	42.546	42.433	42.896	0					27	13	3	0	0	0	0.14426	1	16974	16974		87.696	18.85	1	404500			26906	7436	18141	18205	27259	27259		300			-0.029545803989776687
METLPYLQ	8	Unmodified	_METLPYLQ_					0	0	0		nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7513732910156	2	497.749336	993.484119	2.9152	0.001451	2.0025	0.00099672	4.9176	0.0024478	497.7505632280274	28.689	0.86525	28.689	28.375	29.241	0					51	17	5	0	0	0	0.6088	1	10454	10454		47.657	1.7054	1	1669900			26907	11722	18142	18206	27260	27260					-0.012883969313520538
METVNEPE	8	Unmodified	_METVNEPE_					0	0	0		nc|ENSG00000204334|A1L162|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.70379638671875	2	474.702583	947.390612	-0.24311	-0.00011541	2.1694	0.0010298	1.9263	0.00091444	474.70367019261755	28.107	0.15717	28.107	28.031	28.188	0					8	5	2	0	0	0	0.68432	1	8736	8736		35.618	1.4457	1	54378			26908	11720	18143	18207	27261	27261					-0.08518741104455785
MEVANFYY	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))EVANFYY_		M(1)EVANFYY		M(63)EVANFYY	1	0	1		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7289428710938	2	547.7286	1093.44265	1.884	0.0010319	-1.3668	-0.00074862	0.51723	0.0002833	547.7277470725201	18.838	0.29464	18.838	18.702	18.997	0					9	6	2	0	0	0	0.4723	1	5729	5729		62.978	9.627	1	675030			26909	6353	18144	18208	27262	27262		259			-0.1003357769068316
MEVEAPVAN	9	Unmodified	_MEVEAPVAN_					0	0	0		ENST00000438101.1_1_X:49432665-49432995:-|nuORF;SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant;SALL1|p.T412Nfs*26|1|0.26|ENSG00000103449|chr16:51140987-51140988|-/T|frameshift_variant;SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1	ENST00000438101.1_1_X:49432665-49432995:-|nuORF	ENST00000438101.1_1_X:49432665-49432995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2287292480469	2	480.228768	958.442982	-0.11122	-5.3413E-05	-0.27449	-0.00013182	-0.38572	-0.00018523	480.22861413736877	39.229	0.13588	39.229	39.132	39.268	0					7	4	2	0	0	0	0.14603	1	15420	15420		68.787	7.8149	1	118270			26910	2240	18145	18209	27263	27263					-0.03790157970831842
MEVHLKDPPL	10	Unmodified	_MEVHLKDPPL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.8167114257812	2	589.815541	1177.61653	0.52524	0.00030979	-0.030507	-1.7993E-05	0.49473	0.0002918	589.8157317341103	31.659	0.4365	31.659	31.433	31.869	0					29	12	3	0	0	0	0.63224	1	10858	10858		30.318	3.6248	1	162300	+		26911	14995	18146	18210	27264	27264					0.03482627805442462
MEVKQLDK	8	Unmodified	_MEVKQLDK_					0	0	0		nc|ENSG00000197457|Q9NZ72-2|STMN3;ENSG00000197457|ENST00000370053|STMN3	nc|ENSG00000197457|Q9NZ72-2|STMN3	nc|ENSG00000197457|Q9NZ72-2|STMN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7696533203125	2	495.76806	989.521567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.208	1	12.208	11.708	12.708	0								0	0	0	1.7419	1	2691	2691		108.09	14.892	1				26912	7463	18147	18211	27265	27265					0.026386943342572522
MEVSNMTTV	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))EVSNMTTV_		M(0.997)EVSNM(0.003)TTV		M(25)EVSNM(-25)TTV	1	0	1		ENSG00000198678|ENST00000328207|OR5BS1P	ENSG00000198678|ENST00000328207|OR5BS1P	ENSG00000198678|ENST00000328207|OR5BS1P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2311401367188	2	535.23065	1068.44675	1.8044	0.00096575	-0.73962	-0.00039587	1.0647	0.00056988	535.2301874683457	15.777	0.36085	15.777	15.669	16.03	0					23	7	4	0	0	0	0.30951	1	4368	4368		49.442	10.635	2	10381000			26913	7585	18148	18212	27266	27266		303			-0.08473856259297463
MEWGVSYAV	9	Unmodified	_MEWGVSYAV_					0	0	0			REV__IGSF8|p.A339V|1|0.34|ENSG00000162729|chr1:160093220-160093220|G/A|missense_variant	REV__IGSF8|p.A339V|1|0.34|ENSG00000162729|chr1:160093220-160093220|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2394409179688	2	521.239135	1040.46372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.557	1	18.557	18.057	19.057	0								0	0	0	0.35507	1	4866	4866		24.203	1.1603	1		+		26914	20760	18149	18213	27267	27267					-0.05489567591166633
MEWLRMLW	8	Oxidation (M)	_MEWLRM(Oxidation (M))LW_		MEWLRM(1)LW		M(-34)EWLRM(34)LW	0	0	1		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;HELLS|p.E229K|1|0.43|ENSG00000119969|chr10:94574167-94574167|G/A|missense_variant	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.7872924804688	2	590.78573	1179.55691	1.4985	0.00088529	0.75783	0.00044771	2.2563	0.001333	590.786263955803	36.082	0.43797	36.082	35.956	36.394	0					38	13	4	0	0	0	0.58597	1	14014	14014		51.335	51.335	2	2478400			26915	3152	18150	18214	27268	27268		138			-0.02568966409580753
MFGFTHSFLL	10	Unmodified	_MFGFTHSFLL_					0	0	0		ENSG00000176231|ENST00000322107|OR10H4;ENSG00000171936|ENST00000641646|OR10H3	ENSG00000176231|ENST00000322107|OR10H4	ENSG00000176231|ENST00000322107|OR10H4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.2987670898438	2	600.299527	1198.5845	-1.8663	-0.0011203	1.2189	0.00073172	-0.64738	-0.00038862	600.2999284684107	29.204	0.4363	29.204	29.103	29.539	0					17	11	2	0	0	0	0.61887	1	9783	9783		31.955	0	1	125500			26916	6334	18151	18215	27269	27269					-0.006847398777154012
MFGKKIKLY	9	Unmodified	_MFGKKIKLY_					0	0	0		tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3375244140625	2	564.335913	1126.65727	1.8914	0.0010674	0.74127	0.00041832	2.6327	0.0014857	564.336248098805	33.997	2.6793	33.997	33.829	36.509	0					274	73	6	0	0	0	0.45358	1	13523	13523		37.159	10.466	1	34739000			26917	22666	18152	18216	27270	27270					0.0990101391571443
MFIFILLY	8	Unmodified	_MFIFILLY_					0	0	0			REV__ENST00000558159.1_1_15:44958153-44958801:-|nuORF	REV__ENST00000558159.1_1_15:44958153-44958801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3012084960938	2	530.301007	1058.58746	0.11623	6.1638E-05	0.10475	5.5549E-05	0.22098	0.00011719	530.3013411796363	33.016	0.36628	33.016	32.854	33.22	0					19	10	3	0	0	0	0.63381	1	12181	12181		43.626	0	1	261010	+		26918	20266	18153	18217	27271	27271					0.0605113524711669
MFILRPLV	8	Unmodified	_MFILRPLV_					0	0	0		ENST00000505849.5_1_1:1324040-1326969:-|nuORF	ENST00000505849.5_1_1:1324040-1326969:-|nuORF	ENST00000505849.5_1_1:1324040-1326969:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	330.2058410644531	3	330.205258	987.593944	-1.9068	-0.00062962	4.0569	0.0013396	2.1501	0.00070997	330.20642882434163	28.472	0.24656	28.472	28.313	28.56	0					10	6	2	0	0	0	0.79882	1	9464	9464		19.36	1.0356	1	78366			26919	10189	18154	18218	27272	27272					0.09965073198486607
MFLIRPHS	8	Unmodified	_MFLIRPHS_					0	0	0		ENST00000412804.1_1_3:4532917-4534539:-|nuORF	ENST00000412804.1_1_3:4532917-4534539:-|nuORF	ENST00000412804.1_1_3:4532917-4534539:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.77655029296875	2	500.77348	999.532406	2.9215	0.001463	2.6224	0.0013132	5.5439	0.0027762	500.775015728175	42.809	0.2175	42.809	42.651	42.868	0					9	6	2	0	0	0	0.66372	1	17113	17113		38.806	6.8513	1	131550			26920	9322	18155	18219	27273	27273					0.03262141499203608
MFLRMRGV	8	Unmodified	_MFLRMRGV_					0	0	0		ENST00000367889.7_1_1:165600262-165600346:+|nuORF	ENST00000367889.7_1_1:165600262-165600346:+|nuORF	ENST00000367889.7_1_1:165600262-165600346:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	337.18560791015625	3	337.18598	1008.53611	0.6614	0.00022301	-1.5841	-0.00053415	-0.92275	-0.00031114	337.1854551156839	20.117	0.19064	20.117	20.019	20.21	0					6	4	2	0	0	0	0.72892	1	6202	6202		31.955	11.008	1	190620			26921	8919	18156	18220	27274	27274					0.032184880014142436
MFPSVVMSP	9	Unmodified	_MFPSVVMSP_					0	0	0			REV__NRG1|p.A467V|1|0.18|ENSG00000157168|chr8:32763879-32763879|C/T|missense_variant	REV__NRG1|p.A467V|1|0.18|ENSG00000157168|chr8:32763879-32763879|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7424621582031	2	497.740457	993.46636	2.9125	0.0014497	0.91545	0.00045566	3.828	0.0019053	497.7409357036555	39.281	0.23159	39.281	39.19	39.421	0					9	5	2	0	0	0	0.39215	1	15522	15522		42.396	42.396	1	282590	+		26922	21307	18157	18221	27275	27275					-0.030634354578523926
MFRSMDTI	8	Unmodified	_MFRSMDTI_					0	0	0		CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant;ENSG00000167513|ENST00000301019|CDT1	CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant	CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7325744628906	2	500.733163	999.451773	-0.59938	-0.00030013	-0.49398	-0.00024735	-1.0934	-0.00054748	500.7329316215084	22.886	0.36708	22.886	22.728	23.095	0					18	7	3	0	0	0	0.5676	1	7798	7798		53.351	5.4358	1	671490			26923	464	18158	18222	27276	27276					-0.04797507605985629
MFSLASVPTF	10	Unmodified	_MFSLASVPTF_					0	0	0			REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2802124023438	2	550.27826	1098.54197	3.7457	0.0020612	-0.10225	-5.6264E-05	3.6435	0.0020049	550.2780831971677	36.005	0.3676	36.005	35.849	36.217	0					20	7	4	0	0	0	0.22198	1	13963	13963		76.774	2.5191	1	2237300	+		26924	21748	18159	18223	27277	27277					-0.0033613500593219214
MFVIKGLTN	9	Unmodified	_MFVIKGLTN_					0	0	0		KIAA0146-ANK1|4|fusion;KIAA0146-ANK1|1|fusion;KIAA0146-ANK1|2|fusion;KIAA0146-ANK1|3|fusion;KIAA0146-ANK1|5|fusion;ENSG00000164808|ENST00000297423|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;nc|ENSG00000164808|Q14159-2|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;ENST00000521214.5_1_8:48191985-48612988:+|nuORF	KIAA0146-ANK1|4|fusion	KIAA0146-ANK1|4|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7892761230469	2	511.788795	1021.56304	1.2342	0.00063164	-0.17922	-9.1724E-05	1.055	0.00053991	511.78862603374836	46.377	0.18135	46.377	46.317	46.499	0					18	10	2	0	0	0	0.53083	1	17831	17831		29.15	0	1	142120			26925	11250	18160	18224	27278	27278					0.05311875093570961
MFVPVLLTQ	9	Unmodified	_MFVPVLLTQ_					0	0	0		ENST00000410023.5_1_2:102781281-102781338:+|nuORF	ENST00000410023.5_1_2:102781281-102781338:+|nuORF	ENST00000410023.5_1_2:102781281-102781338:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.86865234375	3	349.868423	1046.58344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.04	1	14.04	13.54	14.54	0								0	0	0	0.30504	1	2912	2912		34.173	0	1				26926	9306	18161	18225	27279	27279					0.06201045753391554
MGAAPAQLR	9	Unmodified	_MGAAPAQLR_					0	0	0			REV__ENST00000430262.2_1_17:47395344-47439458:-|nuORF	REV__ENST00000430262.2_1_17:47395344-47439458:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.75018310546875	2	457.747462	913.480371	4.3171	0.0019762	1.6198	0.00074144	5.9369	0.0027176	457.74823346939354	18.57	0.079338	18.57	18.503	18.582	0					4	2	2	0	0	0	0.23186	1	4870	4870		57.811	2.3071	1	65416	+		26927	19154	18162	18226	27280	27280					0.020169780854416786
MGALFVPQN	9	Unmodified	_MGALFVPQN_					0	0	0			REV__SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	REV__SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7503356933594	2	488.74967	975.484787	0.7635	0.00037316	0.72025	0.00035202	1.4838	0.00072518	488.7501382557704	27.089	0.2935	27.089	26.886	27.18	0					12	7	2	0	0	0	0.30268	1	9433	9433		50.025	0.48849	1	277510	+		26928	21534	18163	18227	27281	27281					-0.003935574916454243
MGAPGHLLPS	10	Unmodified	_MGAPGHLLPS_					0	0	0			REV__FOXN4|p.P152Rfs*50|1|0.13|ENSG00000139445|chr12:109287857-109287857|G/-|frameshift_variant	REV__FOXN4|p.P152Rfs*50|1|0.13|ENSG00000139445|chr12:109287857-109287857|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2567443847656	2	490.25512	978.495686	0.77511	0.00038	3.7946	0.0018603	4.5697	0.0022403	490.25633290150245	40.454	0.42296	40.454	40.295	40.718	0					16	9	3	0	0	0	0.47621	1	16073	16073		47.916	3.3845	1	107530	+		26929	15030	18164	18228	27282	27282					0.005578448826440763
MGDPKVHEF	9	Unmodified	_MGDPKVHEF_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ATP8B4|p.R469M|1|0.23|ENSG00000104043|chr15:49934064-49934064|C/A|missense_variant;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2509155273438	2	530.250034	1058.48552	0.11611	6.1567E-05	0.24016	0.00012735	0.35627	0.00018891	530.2505050242202	37.777	0.22085	37.777	37.662	37.882	0					20	7	4	0	0	0	0.22377	1	14330	14330		58.782	8.7574	1	239270			26930	2263	18165	18229	27283	27283					-0.04138762842603683
MGGGIMDEER	10	Unmodified	_MGGGIMDEER_					0	0	0			REV__ENST00000484858.1_1_9:139701238-139702139:+|nuORF	REV__ENST00000484858.1_1_9:139701238-139702139:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.734619140625	2	547.733891	1093.45323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.699	1	14.699	14.199	15.199	0								0	0	0	0.27541	1	3870	3870		54.776	5.2403	1		+		26931	19645	18166	18230	27284	27284					-0.08975918307919528
MGGHLRLF	8	Unmodified	_MGGHLRLF_					0	0	0			REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.75390625	2	465.752547	929.490542	0.069605	3.2419E-05	1.7454	0.00081291	1.815	0.00084533	465.753417743742	20.721	0.1665	20.721	20.636	20.802	0					10	5	3	0	0	0	0.55361	1	5584	5584		54.765	1.6757	1	162210	+		26932	14432	18167	18231	27285	27285					0.022975858106633495
MGLARGLAAK	10	Unmodified	_MGLARGLAAK_					0	0	0			REV__HUWE1|p.A2165G|1|0.21|ENSG00000086758|chrX:53569646-53569646|G/C|missense_variant	REV__HUWE1|p.A2165G|1|0.21|ENSG00000086758|chrX:53569646-53569646|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7763977050781	2	494.292037	986.56952	-2.5094	-0.0012404	-1.5457	-0.00076404	-4.0551	-0.0020044	494.2908917427464	46.336	0.13861	46.336	46.255	46.394	0					12	8	2	0	0	0	0.73697	1	15646	15646		15.642	1.8665	1	59239	+		26933	20754	18168	18232	27286	27286					0.07569813044949569
MGLGRCGRSR	10	Unmodified	_MGLGRCGRSR_					0	0	0			REV__ENST00000460783.1_1_21:38072046-38081802:+|nuORF	REV__ENST00000460783.1_1_21:38072046-38081802:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.782470703125	2	546.779302	1091.54405	0.44198	0.00024167	-1.2707	-0.00069478	-0.82871	-0.00045312	546.7785585335374	29.726	0.68728	29.726	29.557	30.245	0					44	17	5	0	0	0	0.67464	1	10821	10821		14.137	2.6261	1	3324400	+		26934	19375	18169	18233	27287	27287					0.0019401525087232585
MGLREALIE	9	Unmodified	_MGLREALIE_					0	0	0			REV__tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	REV__tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.781005859375	2	516.281334	1030.54812	-0.045671	-2.3579E-05	-2.7092	-0.0013987	-2.7548	-0.0014223	516.2800952763304	29.611	0.22007	29.611	29.511	29.731	0					14	8	2	0	0	0	0.53083	1	9691	9691		29.15	1.2673	1	122560	+		26935	21801	18170	18234	27288	27288					0.03406383225592435
MGLVILGR	8	Unmodified	_MGLVILGR_					0	0	0		ENST00000381165.3_1_17:5392660-5392717:+|nuORF	ENST00000381165.3_1_17:5392660-5392717:+|nuORF	ENST00000381165.3_1_17:5392660-5392717:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.764892578125	2	429.765123	857.515694	-0.24286	-0.00010437	0.086373	3.712E-05	-0.15648	-6.7251E-05	429.7650582320941	28.414	0.21276	28.414	28.296	28.509	0					12	7	2	0	0	0	0.72892	1	8875	8875		29.842	29.842	1	145060			26936	9108	18171	18235	27289	27289					0.08123640613257521
MGNSYAGQLK	10	Unmodified	_MGNSYAGQLK_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;nc|ENSG00000141449|Q9C091-4|GREB1L;ENST00000578368.5_1_18:18963479-19048745:+|nuORF;ENST00000584446.5_1_18:18963479-19034595:+|nuORF;GREB1L|p.G1039Qfs*16|1|0.06|ENSG00000141449|chr18:21495754-21495755|GG/-|frameshift_variant;GREB1L|p.T1038Kfs*19|1|0.06|ENSG00000141449|chr18:21495751-21495752|-/AACT|frameshift_variant;GREB1|p.K190Efs*7|1|0.05|ENSG00000196208|chr2:11576461-11576462|-/T|frameshift_variant;GREB1|p.L189Ffs*12|1|0.05|ENSG00000196208|chr2:11576462-11576463|-/TTTCTTTTTTTTT|frameshift_variant;ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-3|GREB1;nc|ENSG00000196208|Q4ZG55-2|GREB1;GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000196208|ENST00000381486|GREB1;GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7608642578125	2	534.760766	1067.50698	0.16787	8.9769E-05	-0.71198	-0.00038074	-0.54411	-0.00029097	534.7610242592216	33.081	0.48571	33.081	32.854	33.339	0					33	13	4	0	0	0	0.31613	1	12180	12180		65.465	6.6834	1	1266200			26937	4446;7339;11166	18172	18236	27290	27290					-0.024073778138927082
MGPAPAHLV	9	Unmodified	_MGPAPAHLV_					0	0	0		ENST00000324685.10_1_16:30785454-30785649:+|nuORF	ENST00000324685.10_1_16:30785454-30785649:+|nuORF	ENST00000324685.10_1_16:30785454-30785649:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.74017333984375	2	446.739105	891.463658	-0.1424	-6.3617E-05	2.6853	0.0011996	2.5429	0.001136	446.7402752598702	16.921	0.16184	16.921	16.818	16.98	0					7	3	3	0	0	0	0.52436	1	4944	4944		29.842	1.9593	1	137960			26938	8634	18173	18237	27291	27291					0.01358477199482877
MGPKGRTV	8	Unmodified	_MGPKGRTV_					0	0	0		HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000511127.1_1_4:145766891-145766990:+|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2386169433594	2	423.23673	844.458907	0.97791	0.00041389	-0.96571	-0.00040872	0.012205	5.1655E-06	423.23671438599706	17.108	0.33477	17.108	16.9	17.235	0					20	8	4	0	0	0	0.46013	1	4742	4742		64.207	8.7031	1	428730			26939	4612	18174	18238	27292	27292					0.030455930567200085
MGPPASHTCHR	11	Unmodified	_MGPPASHTCHR_					0	0	0		nc|ENSG00000161692|Q8NFT6-2|DBF4B	nc|ENSG00000161692|Q8NFT6-2|DBF4B	nc|ENSG00000161692|Q8NFT6-2|DBF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	398.5144348144531	3	398.514937	1192.52298	-1.3051	-0.00052011	-0.58347	-0.00023252	-1.8886	-0.00075264	398.5149065659707	18.648	0.12486	18.648	18.588	18.713	0					9	4	3	0	0	0	0.73562	1	4921	4921		24.232	2.2719	1	86208			26940	11610	18175	18239	27293	27293					-0.06557994848640192
MGPRAGEQ	8	Oxidation (M)	_M(Oxidation (M))GPRAGEQ_		M(1)GPRAGEQ		M(44)GPRAGEQ	0	0	1			REV__ENST00000473015.5_1_4:113483525-113509083:-|nuORF	REV__ENST00000473015.5_1_4:113483525-113509083:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.1982421875	2	431.197802	860.381051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.539	1	39.539	39.039	40.039	0								0	0	0	1.7419	1	13284	13284		44.117	6.9577	1		+		26941	14990	18176	18240	27294	27294		568			-0.054724645993019294
MGQTSVSTL	9	Unmodified	_MGQTSVSTL_					0	0	0		PHACTR2|p.N196Kfs*7|1|0.25|ENSG00000112419|chr6:143760558-143760559|-/A|frameshift_variant;PHACTR2|p.T229Qfs*47|1|0.32|ENSG00000112419|chr6:143765277-143765277|A/-|frameshift_variant;PHACTR2|p.N196Ifs*80|2|0.28|ENSG00000112419|chr6:143760559-143760559|A/-|frameshift_variant;PHACTR2|p.L340Sfs*4|2|0.36|ENSG00000112419|chr6:143765608-143765609|-/C|frameshift_variant;PHACTR2|p.P339Lfs*30|1|0.33|ENSG00000112419|chr6:143765609-143765609|C/-|frameshift_variant;ENSG00000112419|ENST00000440869|PHACTR2;ENST00000402863.3_1_6:143999267-144075081:+|nuORF;nc|ENSG00000112419|O75167-2|PHACTR2	PHACTR2|p.N196Kfs*7|1|0.25|ENSG00000112419|chr6:143760558-143760559|-/A|frameshift_variant	PHACTR2|p.N196Kfs*7|1|0.25|ENSG00000112419|chr6:143760558-143760559|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2286682128906	2	462.228768	922.442982	0.1104	5.1029E-05	-0.80681	-0.00037293	-0.69642	-0.0003219	462.22846362348525	20.389	0.13377	20.389	20.31	20.444	0					6	4	2	0	0	0	0.53064	1	5454	5454		29.17	0.91578	1	36583			26942	2743	18177	18241	27295	27295					-0.021341579708291647
MGRERAGGNF	10	Unmodified	_MGRERAGGNF_					0	0	0			REV__ENST00000421161.1_1_6:159528830-159529112:+|nuORF	REV__ENST00000421161.1_1_6:159528830-159529112:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7597045898438	2	547.761632	1093.50871	0.33156	0.00018162	-2.4183	-0.0013247	-2.0867	-0.001143	547.7599670126665	29.404	0.15579	29.404	29.35	29.506	0					5	3	2	0	0	0	0.62235	1	10899	10899		31.53	1.0262	1	50877	+		26943	19079	18178	18242	27296	27296					-0.03430324005262264
MGRRDQRR	8	Unmodified	_MGRRDQRR_					0	0	0			REV__MKS1|p.F377Lfs*53|1|0.3|ENSG00000011143|chr17:58208139-58208139|A/-|frameshift_variant;REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.86114501953125	3	358.861436	1073.56248	-0.90899	-0.0003262	0.17762	6.3742E-05	-0.73136	-0.00026246	358.8614681245837	20.061	0.49014	20.061	19.842	20.332	0					37	16	3	0	0	0	0.79719	1	5514	5514		18.324	18.324	1	599310	+		26944	20885;20886	18179	18243	27297	27297					0.028638932170906628
MGRVQEPG	8	Unmodified	_MGRVQEPG_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2156982421875	2	437.215995	872.417436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.658	1	19.658	19.158	20.158	0								0	0	0	1.7419	1	6251	6251		35.201	1.6851	1		+		26945	17007	18180	18244	27298	27298					-0.023875877025943737
MGSAALPPTSM	11	Oxidation (M)	_MGSAALPPTSM(Oxidation (M))_		MGSAALPPTSM(1)		M(-41)GSAALPPTSM(41)	0	0	1			REV__ENST00000519879.1_1_8:118533115-118541135:+|nuORF	REV__ENST00000519879.1_1_8:118533115-118541135:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7464599609375	2	539.74901	1077.48347	0.25909	0.00013984	-4.2113	-0.002273	-3.9522	-0.0021332	539.7470300668334	39.984	0.17453	39.984	39.873	40.048	0					11	6	2	0	0	0	0.37008	1	15239	15239		54.776	13.998	2	148500	+		26946	16004	18181	18245	27299	27299		614			-0.052175596427332493
MGSAMAVLVPS	11	Unmodified	_MGSAMAVLVPS_					0	0	0			REV__ENST00000248104.11_1_16:1413635-1413878:-|nuORF	REV__ENST00000248104.11_1_16:1413635-1413878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.769775390625	2	531.769745	1061.52494	0.36818	0.00019579	-0.4793	-0.00025488	-0.11112	-5.9088E-05	531.7695601950705	28.151	0.16264	28.151	28.056	28.219	0					8	5	2	0	0	0	0.45317	1	8750	8750		47.657	0	1	89986	+		26947	17952	18182	18246	27300	27300					-0.003363788833894432
MGSHGLWI	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MGSHGLWI_					1	0	0			REV__ENST00000358303.8_1_7:129680864-129680897:-|nuORF	REV__ENST00000358303.8_1_7:129680864-129680897:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7297058105469	2	471.728738	941.442923	2.4696	0.001165	-0.23943	-0.00011294	2.2302	0.001052	471.72871928807587	21.663	0.31601	21.663	21.555	21.871	0					17	6	4	0	0	0	0.57802	1	7077	7077		52.299	52.299	1	1329300	+		26948	18539	18183	18247	27301	27301					-0.030141131801769916
MGSHTIFAEF	10	Unmodified	_MGSHTIFAEF_					0	0	0			REV__NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant	REV__NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.1759338378906	3	380.511187	1138.51173	-0.49268	-0.00018747	-2.4244	-0.00092252	-2.9171	-0.00111	380.51055484417907	35.645	0.26601	35.645	35.535	35.801	0					8	5	2	0	0	0	0.64162	1	13789	13789		29.17	2.374	1	240810	+		26949	15233	18184	18248	27302	27302					-0.05198493671127835
MGSSFSSVGA	10	Unmodified	_MGSSFSSVGA_					0	0	0			REV__nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	REV__nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.20501708984375	2	465.205292	928.396032	-0.43964	-0.00020452	-0.29123	-0.00013548	-0.73087	-0.00034	465.2051711897697	23.294	0.19602	23.294	23.21	23.406	0					13	5	3	0	0	0	0.26198	1	6707	6707		71.877	3.0313	1	253250	+		26950	21166	18185	18249	27303	27303					-0.07103017521967558
MGSSFSSVGA	10	Unmodified	_MGSSFSSVGA_					0	0	0			REV__nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	REV__nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2051696777344	2	465.205292	928.396032	-0.82527	-0.00038392	0.046891	2.1814E-05	-0.77838	-0.00036211	465.2054238171224	23.344	0.33797	23.344	23.211	23.549	0					27	11	4	0	0	0	0.095632	1	6990	6990		96.19	0.15683	1	1560700	+		26951	21166	18185	18249	27304	27304					-0.07103017521967558
MGSSFSSVGA	10	Unmodified	_MGSSFSSVGA_					0	0	0			REV__nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	REV__nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2050476074219	2	465.205292	928.396032	0.69066	0.0003213	-1.3623	-0.00063375	-0.67164	-0.00031245	465.2047036734365	23.526	0.56223	23.526	23.418	23.981	0					27	11	5	0	0	0	0.39566	1	8023	8023		56.721	3.6321	1	7595300	+		26952	21166	18185	18249	27305	27305					-0.07103017521967558
MGSSIGYHT	9	Unmodified	_MGSSIGYHT_					0	0	0		RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7117919921875	2	476.713285	951.412016	-0.13761	-6.5601E-05	-2.8866	-0.0013761	-3.0242	-0.0014417	476.7118198791342	26.126	0.32118	26.126	25.898	26.219	0					13	11	2	0	0	0	0.51817	1	7906	7906		30.504	0.6621	1	40925			26953	1847	18186	18250	27306	27306					-0.06563311285071904
MGSWGVGR	8	Unmodified	_MGSWGVGR_					0	0	0		ENST00000591832.1_1_X:47518288-47519317:+|nuORF;ENST00000590504.1_1_X:47518288-47518834:+|nuORF	ENST00000591832.1_1_X:47518288-47519317:+|nuORF	ENST00000591832.1_1_X:47518288-47519317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2058410644531	2	425.20543	848.396307	0.37322	0.00015869	0.47221	0.00020078	0.84542	0.00035948	425.20561851363334	15.609	1.1074	15.609	15.356	16.463	0					43	22	3	0	0	0	0.7126	1	4293	4293		31.955	31.955	1	531440			26954	10948	18187	18251	27307	27307					-0.03395553011455377
MGVGHYTAY	9	Unmodified	_MGVGHYTAY_					0	0	0		USP4|p.A886V|1|0.12|ENSG00000114316|chr3:49278890-49278890|G/A|missense_variant;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	USP4|p.A886V|1|0.12|ENSG00000114316|chr3:49278890-49278890|G/A|missense_variant	USP4|p.A886V|1|0.12|ENSG00000114316|chr3:49278890-49278890|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.72332763671875	2	499.723652	997.432752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.326	1	31.326	30.826	31.826	0								0	0	0	0.27166	1	10060	10060		40.573	10.069	1				26955	224	18188	18252	27308	27308					-0.06606720905415386
MGVKLCKK	8	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))GVKLC(Carbamidomethyl (C))KK_	MGVKLC(1)KK	M(1)GVKLCKK	MGVKLC(50)KK	M(50)GVKLCKK	0	1	1			REV__ENSG00000185551|ENST00000394166|NR2F2	REV__ENSG00000185551|ENST00000394166|NR2F2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7779541015625	2	490.274998	978.535443	3.4881	0.0017101	-0.057498	-2.819E-05	3.4306	0.001682	490.2749339950825	35.189	0.14916	35.189	35.106	35.255	0					14	6	3	0	0	0	0.59411	1	11891	11891		50.025	50.025	1	128630	+		26956	16628	18189	18253	27309	27309	590	634			0.04531648561703605
MGVLMSKRQTV	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MGVLMSKRQTV_					1	0	0		ENST00000476115.2_1_9:34971295-34972428:+|nuORF;ENSG00000122733|ENST00000242315|PHF24	ENST00000476115.2_1_9:34971295-34972428:+|nuORF	ENST00000476115.2_1_9:34971295-34972428:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2371520996094	3	431.233547	1290.67881	0.76879	0.00033153	4.2202	0.0018199	4.989	0.0021514	431.23623940742345	19.223	0.71231	19.223	19.083	19.795	0					37	16	4	0	0	0	0.50799	1	5944	5944		43.651	14.1	1	1425600			26957	3286	18190	18254	27310	27310					0.04510030882102001
MGVLSSLMRP	10	Unmodified	_MGVLSSLMRP_					0	0	0			REV__ENSG00000196184|ENST00000423932|OR10J1	REV__ENSG00000196184|ENST00000423932|OR10J1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.1961975097656	3	364.196434	1089.56747	-0.96176	-0.00035027	-0.016785	-6.1132E-06	-0.97854	-0.00035638	364.196506575154	15.159	0.048756	15.159	15.115	15.164	0					4	2	2	0	0	0	0.68218	1	3398	3398		22.58	4.3176	1	67654	+		26958	17230	18191	18255	27311	27311					0.0262701624485544
MGVPNSHW	8	Unmodified	_MGVPNSHW_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2122497558594	2	464.210712	926.406871	2.6	0.0012069	0.33668	0.00015629	2.9366	0.0013632	464.2110901435999	29.383	0.35865	29.383	29.274	29.633	0					19	7	3	0	0	0	0.55361	1	10772	10772		54.765	7.9982	1	715760			26959	4333	18192	18256	27312	27312					-0.05927570357039258
MGVVKGLAWM	10	Unmodified	_MGVVKGLAWM_					0	0	0			REV__EHD2|p.T246M|1|0.43|ENSG00000024422|chr19:47726046-47726046|C/T|missense_variant	REV__EHD2|p.T246M|1|0.43|ENSG00000024422|chr19:47726046-47726046|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2894287109375	2	546.290648	1090.56674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.706	1	16.706	16.206	17.206	0								0	0	0	0.4201	1	4017	4017		24.203	2.2429	1		+		26960	12777	18193	18257	27313	27313					0.025082215958036613
MGWTLGSSK	9	Unmodified	_MGWTLGSSK_					0	0	0		ENST00000374700.6_1_2:201450700-201450862:+|nuORF	ENST00000374700.6_1_2:201450700-201450862:+|nuORF	ENST00000374700.6_1_2:201450700-201450862:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7409362792969	2	483.739302	965.464052	3.4812	0.001684	-0.73891	-0.00035744	2.7423	0.0013265	483.7391135332919	15.431	0.15643	15.431	15.354	15.51	0					9	5	2	0	0	0	0.47038	1	3511	3511		35.618	35.618	1	63871			26961	9016	18194	18258	27314	27314					-0.020061478713159886
MGYEKALQQGQ	11	Unmodified	_MGYEKALQQGQ_					0	0	0			REV__ENST00000585059.5_1_14:65415074-65417335:-|nuORF	REV__ENST00000585059.5_1_14:65415074-65417335:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	626.8037719726562	2	626.803162	1251.59177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.313	1	18.313	17.813	18.813	0								0	0	0	0.43542	1	4762	4762		29.17	0	1		+		26962	15055	18195	18259	27315	27315					-0.023960520679338515
MHEAVAWGP	9	Unmodified	_MHEAVAWGP_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.232421875	2	499.231645	996.448736	0.28814	0.00014385	-0.53529	-0.00026724	-0.24716	-0.00012339	499.23149079476684	32.125	0.21852	32.125	32.021	32.239	0					16	9	2	0	0	0	0.55282	1	10362	10362		26.796	2.5934	1	88467	+		26963	21208	18196	18260	27316	27316					-0.04963014668510368
MHFRTHSG	8	Unmodified	_MHFRTHSG_					0	0	0		ZBTB41|p.D754Tfs*3|1|0.04|ENSG00000177888|chr1:197159829-197159830|-/AGAATGT|frameshift_variant;ZBTB41|p.D754Vfs*8|1|0.04|ENSG00000177888|chr1:197159828-197159829|-/GTTA|frameshift_variant;ENSG00000177888|ENST00000367405|ZBTB41;ENST00000467322.1_1_1:197128491-197145097:-|nuORF	ZBTB41|p.D754Tfs*3|1|0.04|ENSG00000177888|chr1:197159829-197159830|-/AGAATGT|frameshift_variant	ZBTB41|p.D754Tfs*3|1|0.04|ENSG00000177888|chr1:197159829-197159830|-/AGAATGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7262268066406	2	486.727061	971.439569	-2.9126	-0.0014176	0.94916	0.00046198	-1.9634	-0.00095566	486.727574527001	31.743	0.26483	31.743	31.658	31.923	0					17	8	3	0	0	0	0.66372	1	10953	10953		38.806	38.806	1	422020			26964	6691	18197	18261	27317	27317					-0.04729363234173434
MHGQGMDL	8	2 Oxidation (M)	_M(Oxidation (M))HGQGM(Oxidation (M))DL_		M(1)HGQGM(1)DL		M(50)HGQGM(50)DL	0	0	2			REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.68365478515625	2	460.68367	919.352787	-0.45629	-0.00021021	0.036464	1.6798E-05	-0.41983	-0.00019341	460.6837650296596	18.906	0.30119	18.906	18.811	19.112	0					11	6	3	0	0	0	0.59411	1	5763	5763		50.025	9.4519	1	421750	+		26965	20948	18198	18262	27318	27318		750;751			-0.11011530570897321
MHIKPMKF	8	2 Oxidation (M)	_M(Oxidation (M))HIKPM(Oxidation (M))KF_		M(1)HIKPM(1)KF		M(71)HIKPM(71)KF	0	0	2			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2797241210938	2	532.274998	1062.53544	3.4095	0.0018148	1.7657	0.00093983	5.1752	0.0027546	532.2755849692804	31.481	0.51017	31.481	31.241	31.751	0					23	10	3	0	0	0	0.39542	1	11791	11791		71.378	7.1706	1	595850	+		26966	14419	18199	18263	27319	27319		548;549			0.006676485616935679
MHKKRNSSNAF	11	Unmodified	_MHKKRNSSNAF_					0	0	0			REV__ZIC1|p.D348N|1|0.14|ENSG00000152977|chr3:147412577-147412577|G/A|missense_variant	REV__ZIC1|p.D348N|1|0.14|ENSG00000152977|chr3:147412577-147412577|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	660.3358154296875	2	660.335495	1318.65644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.819	1	34.819	34.319	35.319	0								0	0	0	0.45674	1	12356	12356		23.523	0.94304	1		+		26967	22309	18200	18264	27320	27320					0.009855675287326449
MHLLEPLTE	9	Oxidation (M)	_M(Oxidation (M))HLLEPLTE_		M(1)HLLEPLTE		M(58)HLLEPLTE	0	0	1			REV__nc|ENSG00000135902|Q07001-2|CHRND	REV__nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7781982421875	2	549.778625	1097.5427	0.53088	0.00029187	-1.1131	-0.00061193	-0.58217	-0.00032007	549.778075975787	12.568	0.13106	12.568	12.528	12.659	0					8	4	3	0	0	0	0.23186	1	2681	2681		57.811	17.033	1	298640	+		26968	14830	18201	18265	27321	27321		559			-0.0021734035690315068
MHLTAWPQG	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))HLTAWPQG_		M(1)HLTAWPQG		M(42)HLTAWPQG	1	0	1		ENST00000357254.8_1_16:71488064-71490690:-|nuORF;ENST00000393539.6_1_16:71488114-71490699:-|nuORF;ENST00000497160.5_1_16:71488061-71490699:-|nuORF	ENST00000357254.8_1_16:71488064-71490690:-|nuORF	ENST00000357254.8_1_16:71488064-71490690:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2232666015625	2	549.755484	1097.49641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.061	1	12.061	11.561	12.561	0								0	0	0	0.2591	1	2622	2622		42.396	15.703	1				26969	8820	18202	18266	27322	27322		350			-0.048433604683168596
MHNCGVNKEIC	11	Unmodified	_MHNCGVNKEIC_					0	0	0			REV__ARIH2|p.G308V|1|0.29|ENSG00000177479|chr3:48974851-48974851|G/T|missense_variant	REV__ARIH2|p.G308V|1|0.29|ENSG00000177479|chr3:48974851-48974851|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	624.270263671875	2	624.270118	1246.52568	1.2959	0.00080899	-1.4928	-0.00093189	-0.19686	-0.0001229	624.2693772896072	39.85	0.29354	39.85	39.732	40.026	0					19	10	3	0	0	0	0.62108	1	15687	15687		35.152	5.982	1	109270	+		26970	12224	18203	18267	27323	27323					-0.0877190750597947
MHPYCLPN	8	Unmodified	_MHPYCLPN_					0	0	0		PPRC1|p.G704Vfs*30|1|0.2|ENSG00000148840|chr10:102140614-102140614|G/-|frameshift_variant	PPRC1|p.G704Vfs*30|1|0.2|ENSG00000148840|chr10:102140614-102140614|G/-|frameshift_variant	PPRC1|p.G704Vfs*30|1|0.2|ENSG00000148840|chr10:102140614-102140614|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7156982421875	2	487.714773	973.414993	0.73533	0.00035863	1.2682	0.0006185	2.0035	0.00097714	487.7152138704049	29.048	1.2535	29.048	28.043	29.296	0					51	31	3	0	0	0	0.67475	1	10292	10292		37.028	6.5248	1	613100			26971	11968	18204	18268	27324	27324					-0.0727775943191773
MHRFFPHRQVD	11	Unmodified	_MHRFFPHRQVD_					0	0	0			REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF	REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.5799255371094	3	490.578817	1468.71462	0.45135	0.00022142	1.5114	0.00074148	1.9628	0.0009629	490.5795965624578	15.41	0.30401	15.41	15.297	15.601	0					12	7	3	0	0	0	0.69004	1	3972	3972		28.577	8.2617	1	152620	+		26972	16626	18205	18269	27325	27325					-0.0009875082600956375
MHRFFPHRQVD	11	Unmodified	_MHRFFPHRQVD_					0	0	0			REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF	REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.5794372558594	3	490.578817	1468.71462	-0.54594	-0.00026783	1.8869	0.00092565	1.3409	0.00065783	490.5797167940897	15.377	0.21739	15.377	15.212	15.429	0					9	4	3	0	0	0	0.79309	1	4049	4049		16.53	0	1	166690	+		26973	16626	18205	18269	27326	27326					-0.0009875082600956375
MHRRLNGPS	9	Unmodified	_MHRRLNGPS_					0	0	0			REV__ZNF44|p.W256Gfs*34|2|0.32|ENSG00000197857|chr19:12273633-12273633|A/-|frameshift_variant	REV__ZNF44|p.W256Gfs*34|2|0.32|ENSG00000197857|chr19:12273633-12273633|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2786865234375	2	534.279992	1066.54543	-0.52232	-0.00027907	-1.9138	-0.0010225	-2.4362	-0.0013016	534.279037294816	25.484	0.13897	25.484	25.429	25.568	0					9	5	2	0	0	0	0.39215	1	7924	7924		42.396	3.1433	1	99746	+		26974	17359	18206	18270	27327	27327					0.014819726113046272
MIAALLHGR	9	Unmodified	_MIAALLHGR_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.284423828125	2	491.286754	980.558955	-2.7228	-0.0013377	-1.2249	-0.00060177	-3.9477	-0.0019395	491.2859847891508	38.789	0.12177	38.789	38.729	38.851	0					11	6	2	0	0	0	0.41354	1	13854	13854		40.573	3.5441	1	106260			26975	5738	18207	18271	27328	27328					0.06789830390550833
MIAIFMISF	9	Unmodified	_MIAIFMISF_					0	0	0		tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1	tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1	tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.780517578125	2	536.782124	1071.5497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.345	1	34.345	33.845	34.845	0								0	0	0	0.22284	1	12148	12148		31.955	0	1				26976	22924	18208	18272	27329	27329					0.016783009899882018
MIARRNPEPL	10	Unmodified	_MIARRNPEPL_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	598.8319091796875	2	598.832057	1195.64956	-0.054979	-3.2923E-05	-0.11899	-7.1258E-05	-0.17397	-0.00010418	598.8320896727621	24.317	0.49564	24.317	24.161	24.656	0					33	11	4	0	0	0	0.11826	1	8133	8133		70.816	24.844	1	1378200			26977	4958	18209	18273	27330	27330					0.05956254648140202
MIARRNPEPL	10	Unmodified	_MIARRNPEPL_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.3341674804688	2	598.832057	1195.64956	0.18894	0.00011314	0.29319	0.00017557	0.48213	0.00028872	598.8322755639009	24.268	0.31413	24.268	24.079	24.393	0					13	6	3	0	0	0	0.35046	1	8473	8473		49.442	22.749	1	136930			26978	4958	18209	18273	27331	27331					0.05956254648140202
MICGQFFE	8	Carbamidomethyl (C)	_MIC(Carbamidomethyl (C))GQFFE_	MIC(1)GQFFE		MIC(48)GQFFE		0	1	0			REV__KIF20B|p.N445*|1|0.1|ENSG00000138182|chr10:89718763-89718764|-/T|frameshift_variant	REV__KIF20B|p.N445*|1|0.1|ENSG00000138182|chr10:89718763-89718764|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.722900390625	2	516.219888	1030.42522	0.18666	9.6355E-05	1.8063	0.00093245	1.993	0.0010288	516.2212213666897	35.886	1.0105	35.886	35.586	36.596	0					35	20	4	0	0	0	0.60719	1	13814	13814		47.916	7.343	1	424440	+		26979	14963	18210	18274	27332	27332	552				-0.08877196497337536
MIESYINY	8	Unmodified	_MIESYINY_					0	0	0			REV__tr|U7T3W3|U7T3W3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00283PE=4SV=1	REV__tr|U7T3W3|U7T3W3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00283PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7367553710938	2	516.738968	1031.46338	-0.51008	-0.00026358	-3.597	-0.0018587	-4.1071	-0.0021223	516.7371344232149	36.924	0.17101	36.924	36.82	36.991	0					9	5	2	0	0	0	0.61938	1	14403	14403		45.952	1.4209	1	169530	+		26980	22150	18211	18275	27333	27333					-0.051089873110413464
MIFHELGFV	9	Unmodified	_MIFHELGFV_					0	0	0			REV__ENST00000402563.5_2_18:13681604-13681643:-|nuORF	REV__ENST00000402563.5_2_18:13681604-13681643:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7811889648438	2	546.78097	1091.54739	-1.5031	-0.00082186	1.0298	0.00056309	-0.47326	-0.00025877	546.7816076204899	40.348	0.17303	40.348	40.248	40.421	0					18	9	3	0	0	0	0.39123	1	14337	14337		42.474	3.6683	1	124890	+		26981	18956	18212	18276	27334	27334					0.005275885765286148
MIGASTTLAI	10	Unmodified	_MIGASTTLAI_					0	0	0			REV__ENST00000406202.2_1_6:157297523-157298164:+|nuORF	REV__ENST00000406202.2_1_6:157297523-157298164:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.268798828125	2	489.270435	976.526318	-1.2517	-0.00061243	-2.9229	-0.0014301	-4.1746	-0.0020425	489.2690318327436	34.693	0.23963	34.693	34.593	34.833	0					17	11	2	0	0	0	0.60076	1	11697	11697		34.173	0	1	114660	+		26982	18974	18213	18277	27335	27335					0.03711578477009425
MIGLGSLSVV	10	Oxidation (M)	_M(Oxidation (M))IGLGSLSVV_		M(1)IGLGSLSVV		M(74)IGLGSLSVV	0	0	1			REV__L1M2_dup4231|chr7:155968542-155968983:+|4.120048319926696|0.1764610938163524|4.55|482.0|32|3|anti-sense	REV__L1M2_dup4231|chr7:155968542-155968983:+|4.120048319926696|0.1764610938163524|4.55|482.0|32|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2781982421875	2	496.27826	990.541968	0.75371	0.00037405	-1.8764	-0.00093124	-1.1227	-0.00055719	496.27804386590225	41.7	0.18195	41.7	41.607	41.789	0					16	7	4	0	0	0	0.24485	1	16394	16394		73.975	17.254	1	64842	+		26983	20803	18214	18278	27336	27336		743			0.04631864994087209
MIHLRVSLLWP	11	Unmodified	_MIHLRVSLLWP_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	682.8961181640625	2	682.8972	1363.77985	-1.3529	-0.00092387	0.56359	0.00038487	-0.78928	-0.000539	682.8975025929373	41.529	1.8393	41.529	40.068	41.907	0					109	79	2	0	0	0	0.62108	5	15832	15291;15501;15591;15711;15832		35.152	25.574	1	108970			26984	10551	18215	18279	27337;27338;27339;27340;27341	27341					0.11250850647138577
MIHLRVSLLWP	11	Unmodified	_MIHLRVSLLWP_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	683.39794921875	2	682.8972	1363.77985	-1.6551	-0.0011303	1.0872	0.00074247	-0.56788	-0.0003878	682.8978890554383	41.565	1.2617	41.565	40.769	42.031	0					79	48	2	0	0	0	0.72154	1	16253	16253		25.574	0	1	105290			26985	10551	18215	18279	27342	27342					0.11250850647138577
MIIDTQLCR	9	Unmodified	_MIIDTQLCR_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;SPG11|p.L950Wfs*13|2|0.21|ENSG00000104133|chr15:44615552-44615552|A/-|frameshift_variant;SPG11|p.K717Nfs*8|1|0.07|ENSG00000104133|chr15:44626424-44626424|T/-|frameshift_variant;SPG11|p.F771Cfs*4|1|0.18|ENSG00000104133|chr15:44622732-44622733|-/C|frameshift_variant	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7822265625	2	546.780644	1091.54674	1.9052	0.0010417	2.9443	0.0016099	4.8495	0.0026516	546.7807874031386	40.488	0.71627	40.488	40.176	40.892	0					22	10	3	0	0	0	0.21263	1	16119	16119		35.618	0	1	206810			26986	2268	18216	18280	27343	27343					0.004624258651801938
MIIFQDLI	8	Oxidation (M)	_M(Oxidation (M))IIFQDLI_		M(1)IIFQDLI		M(77)IIFQDLI	0	0	1		nc|ENSG00000219491|Q9HAU6|TPT1P8	nc|ENSG00000219491|Q9HAU6|TPT1P8	nc|ENSG00000219491|Q9HAU6|TPT1P8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7770690917969	2	504.775354	1007.53615	3.6713	0.0018532	0.11452	5.7807E-05	3.7858	0.001911	504.7754030234283	21.755	0.12436	21.755	21.678	21.803	0					8	3	3	0	0	0	0.34985	1	6295	6295		76.847	11.043	1	185780			26987	11765	18217	18281	27344	27344		462			0.03268766482415231
MIIKQKATM	9	2 Oxidation (M)	_M(Oxidation (M))IIKQKATM(Oxidation (M))_		M(1)IIKQKATM(1)		M(49)IIKQKATM(49)	0	0	2		nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD	nc|ENSG00000198947|P11532-3|DMD	nc|ENSG00000198947|P11532-3|DMD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.296875	2	548.29867	1094.58279	-1.5075	-0.00082654	-0.99857	-0.00054751	-2.506	-0.0013741	548.2981640228439	36.47	0.23272	36.47	36.383	36.616	0					26	11	3	0	0	0	0.30951	1	13050	13050		49.442	9.3834	1	357480			26988	803	18218	18282	27345	27345		37;38			0.03927883042024405
MIITLSLQ	8	Oxidation (M)	_M(Oxidation (M))IITLSLQ_		M(1)IITLSLQ		M(46)IITLSLQ	0	0	1		nc|ENSG00000148482|Q504Y0-5|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12;nc|ENSG00000148482|Q504Y0-2|SLC39A12	nc|ENSG00000148482|Q504Y0-5|SLC39A12	nc|ENSG00000148482|Q504Y0-5|SLC39A12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.76934814453125	2	467.767529	933.520504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.722	1	15.722	15.222	16.222	0								0	0	0	1.7419	1	4355	4355		45.952	8.1404	1				26989	4835	18219	18283	27346	27346		197			0.05108479965349488
MIKEKEEM	8	Unmodified	_MIKEKEEM_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant;CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2517700195312	2	519.253928	1036.4933	1.6002	0.00083089	-4.1258	-0.0021423	-2.5256	-0.0013114	519.2520526789704	38.929	0.96791	38.929	38.156	39.124	0					26	20	2	0	0	0	0.51384	1	15336	15336		58.782	7.4465	1	476650			26990	4290	18220	18284	27347	27347					-0.02348371637344826
MIKEWEEFS	9	Unmodified	_MIKEWEEFS_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.7762451171875	2	599.776082	1197.53761	0.58387	0.00035019	-0.23549	-0.00014124	0.34838	0.00020895	599.775958529762	18.725	0.17442	18.725	18.641	18.816	0					11	4	3	0	0	0	0.16524	1	5541	5541		65.803	2.4969	1	1904500	+		26991	14323	18221	18285	27348	27348					-0.0532564421951065
MIKSNCLK	8	Unmodified	_MIKSNCLK_					0	0	0			REV__ENST00000496239.5_1_1:16776277-16776712:+|nuORF	REV__ENST00000496239.5_1_1:16776277-16776712:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7537536621094	2	468.753898	935.493244	-0.12759	-5.9808E-05	-0.31941	-0.00014972	-0.447	-0.00020953	468.7538081426769	13.033	0.14512	13.033	12.984	13.129	0					5	3	2	0	0	0	0.26534	1	3087	3087		94.006	11.701	1	141810	+		26992	19770	18222	18286	27349	27349					0.02291673153320062
MILPSSPPIEL	11	Unmodified	_MILPSSPPIEL_					0	0	0			REV__ENST00000439058.5_1_7:20259313-20259349:+|nuORF	REV__ENST00000439058.5_1_7:20259313-20259349:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	598.8320922851562	2	598.8334	1195.65225	-1.8523	-0.0011092	-0.33046	-0.00019789	-2.1828	-0.0013071	598.8333416340569	24.123	0.39269	24.123	23.949	24.342	0					22	9	3	0	0	0	0.44025	1	7437	7437		47.657	5.2612	1	280800	+		26993	19225	18223	18287	27350	27350					0.0622466526244807
MIMKVRQTV	9	Unmodified	_MIMKVRQTV_					0	0	0			REV__ENST00000504466.1_1_5:74645886-74647190:+|nuORF	REV__ENST00000504466.1_1_5:74645886-74647190:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.21221923828125	3	369.212195	1104.61476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.902	1	41.902	41.402	42.402	0								0	0	0	0.36056	1	13867	13867		22.58	4.3176	1		+		26994	14024	18224	18288	27351	27351					0.06663295515841128
MIMPTILR	8	Unmodified	_MIMPTILR_					0	0	0			REV__ENST00000608304.5_2_3:73674880-73675039:+|nuORF	REV__ENST00000608304.5_2_3:73674880-73675039:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7792663574219	2	487.779916	973.545279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.476	1	35.476	34.976	35.976	0								0	0	0	1.7419	1	12002	12002		38.806	1.647	1		+		26995	20630	18225	18289	27352	27352					0.05744836567077982
MINAVTLNN	9	Unmodified	_MINAVTLNN_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;MIB1-MYO5B|1|fusion	ENSG00000167306|ENST00000285039|MYO5B;MIB1-MYO5B|1|fusion	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2572937011719	2	495.257859	988.501166	-2.4472	-0.001212	1.8226	0.00090267	-0.62455	-0.00030931	495.25879433630183	40.671	0.19181	40.671	40.587	40.779	0					13	10	2	0	0	0	0.48623	1	14426	14426		33.922	0.40605	1	67295			26996	5983;11366	18226	18290	27353	27353					0.006455236744614012
MINIKSIPK	9	Unmodified	_MINIKSIPK_					0	0	0		ENSG00000123545|ENST00000316149|NDUFAF4	ENSG00000123545|ENST00000316149|NDUFAF4	ENSG00000123545|ENST00000316149|NDUFAF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.3165893554688	2	522.31772	1042.62089	0.81688	0.00042667	-2.1504	-0.0011232	-1.3335	-0.00069651	522.3158106675788	32.569	0.25345	32.569	32.393	32.646	0					15	11	2	0	0	0	0.48389	1	10532	10532		34.173	0	1	72652			26997	3327	18227	18291	27354	27354					0.1012813701900086
MINNSRNL	8	Unmodified	_MINNSRNL_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.24591064453125	2	481.247826	960.481099	-0.2923	-0.00014067	-3.1397	-0.001511	-3.432	-0.0016517	481.24603171983114	21.306	0.1575	21.306	21.2	21.357	0					10	3	4	0	0	0	0.69548	1	6163	6163		34.173	0	1	147900			26998	3348	18228	18292	27355	27355					-0.0007222726551390224
MIPFYIYSAP	10	Unmodified	_MIPFYIYSAP_					0	0	0			REV__ENST00000524339.5_1_8:82626874-82630434:-|nuORF	REV__ENST00000524339.5_1_8:82626874-82630434:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.20477294921875	3	401.203583	1200.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.266	1	34.266	33.766	34.766	0								0	0	0	0.4201	1	11547	11547		17.468	3.9601	1		+		26999	19942	18229	18293	27356	27356					-0.0033527545481319976
MIPVFPPDQ	9	Unmodified	_MIPVFPPDQ_					0	0	0		nc|ENSG00000134532|P35711-4|SOX5;SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF	nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-4|SOX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.513427734375	3	348.512528	1042.51575	0.49921	0.00017398	1.5727	0.00054811	2.0719	0.00072209	348.5133644588522	29.566	0.18221	29.566	29.512	29.694	0					9	4	3	0	0	0	0.41113	1	10585	10585		40.778	5.1599	1	286540			27000	3925	18230	18294	27357	27357					-0.0038040417741740384
MIRIHMPL	8	Unmodified	_MIRIHMPL_					0	0	0			REV__ENST00000418944.1_1_2:110941632-110941998:+|nuORF	REV__ENST00000418944.1_1_2:110941632-110941998:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.78460693359375	2	505.785533	1009.55651	-0.73737	-0.00037295	-0.019192	-9.7068E-06	-0.75656	-0.00038266	505.78523780855875	31.019	0.22229	31.019	30.895	31.117	0					16	8	3	0	0	0	0.68754	1	10231	10231		35.201	8.1534	1	84566	+		27001	19056	18231	18295	27358	27358					0.05211658661221463
MISAHPRPL	9	Unmodified	_MISAHPRPL_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9;REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7870178222656	2	511.284211	1020.55387	3.0872	0.0015784	3.0403	0.0015545	6.1275	0.0031329	511.2860153839381	36.286	0.71365	36.286	36.149	36.863	0					37	14	3	0	0	0	0.45358	1	14231	14231		37.159	37.159	1	906100	+		27002	14823;12704	18232	18296	27359	27359					0.044415265278985316
MISKLIGAPA	10	Unmodified	_MISKLIGAPA_					0	0	0			REV__nc|ENSG00000186994|Q6NY19-1|KANK3	REV__nc|ENSG00000186994|Q6NY19-1|KANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7947082519531	2	500.79662	999.578688	-0.62828	-0.00031464	-2.5396	-0.0012718	-3.1679	-0.0015865	500.7954367116	43.089	0.17759	43.089	42.994	43.171	0					8	4	2	0	0	0	0.61187	1	17224	17224		32.812	0.85756	1	95608	+		27003	17103	18233	18297	27360	27360					0.07888161610640054
MITLLNAPF	9	Unmodified	_MITLLNAPF_					0	0	0		GPR83|p.T125A|1|0.15|ENSG00000123901|chr11:94400875-94400875|T/C|missense_variant	GPR83|p.T125A|1|0.15|ENSG00000123901|chr11:94400875-94400875|T/C|missense_variant	GPR83|p.T125A|1|0.15|ENSG00000123901|chr11:94400875-94400875|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2851257324219	2	510.283346	1018.55214	3.0501	0.0015564	0.28762	0.00014677	3.3377	0.0017032	510.28353659426256	30.857	0.36255	30.857	30.697	31.059	0					18	7	4	0	0	0	0.19605	1	11479	11479		62.107	1.8135	1	2193700			27004	11163	18234	18298	27361	27361					0.043604727192928294
MITQYKLN	8	Unmodified	_MITQYKLN_					0	0	0			REV__tr|U7SPV9|U7SPV9_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01720PE=3SV=1	REV__tr|U7SPV9|U7SPV9_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01720PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7704162597656	2	505.770603	1009.52665	1.2451	0.00062974	-2.0929	-0.0010585	-0.84776	-0.00042877	505.7696325360683	34.077	0.68734	34.077	33.802	34.489	0					31	14	3	0	0	0	0.49216	1	13044	13044		60.972	2.19	1	472960	+		27005	21830	18235	18299	27362	27362					0.022269981968747743
MIVLFALPGG	10	Unmodified	_MIVLFALPGG_					0	0	0			REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF	REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2950134277344	2	509.293714	1016.57287	3.0094	0.0015327	-0.88746	-0.00045198	2.122	0.0010807	509.29319781387625	38.242	0.24506	38.242	38.055	38.3	0					18	5	4	0	0	0	0.3122	1	15030	15030		65.897	9.1764	1	757160	+		27006	14080	18236	18300	27363	27363					0.06525063098956707
MIYIDLETV	9	Unmodified	_MIYIDLETV_					0	0	0		ENST00000435881.6_1_17:40723892-40724087:+|nuORF	ENST00000435881.6_1_17:40723892-40724087:+|nuORF	ENST00000435881.6_1_17:40723892-40724087:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7831420898438	2	548.783376	1095.5522	1.7631	0.00096754	-1.6618	-0.00091196	0.10128	5.5579E-05	548.7823447395639	43.399	0.18979	43.399	43.345	43.535	0					16	10	2	0	0	0	0.49003	1	16967	16967		33.516	1.5607	1	35474			27007	9525	18237	18301	27364	27364					0.008244279286373057
MKAAHAAKK	9	Oxidation (M)	_M(Oxidation (M))KAAHAAKK_		M(1)KAAHAAKK		M(63)KAAHAAKK	0	0	1			REV__PIP4K2B|p.T386M|1|0.22|ENSG00000276293|chr17:38770449-38770449|G/A|missense_variant	REV__PIP4K2B|p.T386M|1|0.22|ENSG00000276293|chr17:38770449-38770449|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.27679443359375	2	486.276386	970.53822	-0.28955	-0.0001408	1.1939	0.00058057	0.90435	0.00043976	486.2769313837162	12.381	0.1186	12.381	12.293	12.411	0					9	4	3	0	0	0	0.18605	1	2597	2597		63.306	17.354	1	565300	+		27008	21375	18238	18302	27365	27365		769			0.051772400108689
MKALYEQNQ	9	Unmodified	_MKALYEQNQ_					0	0	0		ENST00000473460.1_1_20:25394446-25397839:+|nuORF;ENSG00000101003|ENST00000262460|GINS1	ENST00000473460.1_1_20:25394446-25397839:+|nuORF	ENST00000473460.1_1_20:25394446-25397839:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7708740234375	2	562.773874	1123.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.258	1	26.258	25.758	26.758	0								0	0	0	0.28666	1	8428	8428		37.812	3.639	1				27009	2086	18239	18303	27366	27366					-0.023631086424074965
MKASEATVP	9	Oxidation (M)	_M(Oxidation (M))KASEATVP_		M(1)KASEATVP		M(61)KASEATVP	0	0	1		ENST00000319551.12_1_7:149412416-149417105:+|nuORF	ENST00000319551.12_1_7:149412416-149417105:+|nuORF	ENST00000319551.12_1_7:149412416-149417105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2366638183594	2	475.236593	948.458632	0.61945	0.00029439	-1.1086	-0.00052685	-0.48914	-0.00023246	475.2362265714257	39.832	0.15122	39.832	39.763	39.915	0					11	5	3	0	0	0	0.20551	1	15684	15684		60.972	6.2073	1	124020			27010	8609	18240	18304	27367	27367		343			-0.017658714537901687
MKAVLIGM	8	Unmodified	_MKAVLIGM_					0	0	0		ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.74725341796875	2	431.748085	861.481616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.681	1	38.681	38.181	39.181	0								0	0	0	1.7419	1	14703	14703		28.254	1.4582	1				27011	5867	18241	18305	27368	27368					0.04533476129995506
MKAYEPKLTP	10	Unmodified	_MKAYEPKLTP_					0	0	0		NIPBL|p.R1181M|1|0.32|ENSG00000164190|chr5:37000856-37000856|G/T|missense_variant	NIPBL|p.R1181M|1|0.32|ENSG00000164190|chr5:37000856-37000856|G/T|missense_variant	NIPBL|p.R1181M|1|0.32|ENSG00000164190|chr5:37000856-37000856|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.2151184082031	3	393.21437	1176.62128	0.12253	4.818E-05	1.6557	0.00065105	1.7782	0.00069923	393.21508366141325	24.222	0.16525	24.222	24.113	24.278	0					7	3	3	0	0	0	0.60281	1	8461	8461		33.922	3.3528	1	239560			27012	11856	18242	18306	27369	27369					0.04003511948189953
MKDDVIKKV	9	Oxidation (M)	_M(Oxidation (M))KDDVIKKV_		M(1)KDDVIKKV		M(46)KDDVIKKV	0	0	1		tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1	tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1	tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3151245117188	2	546.310092	1090.60563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.246	1	37.246	36.746	37.746	0								0	0	0	0.23445	1	12599	12599		45.972	13.16	1				27013	22959	18243	18307	27370	27370		826			0.0639522543115163
MKDKGENII	9	Unmodified	_MKDKGENII_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.2794799804688	2	524.278792	1046.54303	1.4471	0.00075869	-0.60746	-0.00031848	0.83965	0.00044021	524.2783256370234	29.162	0.1974	29.162	29.125	29.323	0					10	7	2	0	0	0	0.41113	1	9185	9185		40.778	1.5253	1	78003	+		27014	13685	18244	18308	27371	27371					0.021620793629836044
MKDVYEKNPQ	10	Unmodified	_MKDVYEKNPQ_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	626.30810546875	2	626.305538	1250.59652	3.1832	0.0019936	0.73656	0.00046131	3.9197	0.002455	626.3060836099068	16.072	0.31962	16.072	16.014	16.333	0					10	6	3	0	0	0	0.11048	1	4387	4387		93.598	5.8433	1	951960			27015	4210	18245	18309	27372	27372					-0.018751679251636233
MKEDPTPSFMK	11	Unmodified	_MKEDPTPSFMK_					0	0	0			REV__CPZ|p.I506Hfs*8|1|0.42|ENSG00000109625|chr4:8618435-8618436|-/G|frameshift_variant	REV__CPZ|p.I506Hfs*8|1|0.42|ENSG00000109625|chr4:8618435-8618436|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	655.8082885742188	2	655.809599	1309.60464	-0.1053	-6.9054E-05	-2.018	-0.0013234	-2.1233	-0.0013925	655.8083366943066	16.996	0.21582	16.996	16.891	17.107	0					6	4	2	0	0	0	0.69524	1	4835	4835		28.081	0	1	183700	+		27016	12634	18246	18310	27373	27373					-0.03777357000080883
MKETTFPWT	9	Unmodified	_MKETTFPWT_					0	0	0		tr|U7SZ03|U7SZ03_FUSNUEthanolamineutilizationproteinEutQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00832PE=4SV=1	tr|U7SZ03|U7SZ03_FUSNUEthanolamineutilizationproteinEutQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00832PE=4SV=1	tr|U7SZ03|U7SZ03_FUSNUEthanolamineutilizationproteinEutQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00832PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.7730712890625	2	570.773342	1139.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.723	1	35.723	35.223	36.223	0								0	0	0	0.15451	1	13417	13417		58.782	0	1				27017	22888	18247	18311	27374	27374					-0.032053230113206155
MKFQRNNL	8	Unmodified	_MKFQRNNL_					0	0	0			REV__ZNF461|p.S208Tfs*62|1|0.18|ENSG00000197808|chr19:36639722-36639723|-/AAATGCAATGAGTG|frameshift_variant	REV__ZNF461|p.S208Tfs*62|1|0.18|ENSG00000197808|chr19:36639722-36639723|-/AAATGCAATGAGTG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7781372070312	2	525.779293	1049.54403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.662	1	35.662	35.162	36.162	0								0	0	0	1.7419	1	11687	11687		25.45	1.2474	1		+		27018	22321	18248	18312	27375	27375					0.02124338522526159
MKFYPIEA	8	Unmodified	_MKFYPIEA_					0	0	0		tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.75653076171875	2	499.754421	997.494289	0.32987	0.00016486	-2.6136	-0.0013062	-2.2837	-0.0011413	499.7533784892697	30.326	0.39619	30.326	30.089	30.485	0					29	14	3	0	0	0	0.60719	1	9582	9582		47.916	5.5195	1	452350			27019	22683	18249	18313	27376	27376					-0.004557892061370694
MKGIIGKM	8	Unmodified	_MKGIIGKM_					0	0	0		ENST00000604458.1_1_2:198415366-198415393:+|nuORF	ENST00000604458.1_1_2:198415366-198415393:+|nuORF	ENST00000604458.1_1_2:198415366-198415393:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2530517578125	2	439.253534	876.492515	-3.081	-0.0013534	2.06	0.00090487	-1.021	-0.00044849	439.25436062057344	25.536	0.22786	25.536	25.414	25.642	0					11	6	3	0	0	0	0.72381	1	8114	8114		30.504	30.504	1	90380			27020	11065	18250	18314	27377	27377					0.04932878504280325
MKGLEVMAF	9	Unmodified	_MKGLEVMAF_					0	0	0		ZAP70|p.P546L|1|0.45|ENSG00000115085|chr2:97738008-97738008|C/T|missense_variant	ZAP70|p.P546L|1|0.45|ENSG00000115085|chr2:97738008-97738008|C/T|missense_variant	ZAP70|p.P546L|1|0.45|ENSG00000115085|chr2:97738008-97738008|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2608032226562	2	513.261556	1024.50856	0.012131	6.2262E-06	-0.40942	-0.00021014	-0.39729	-0.00020391	513.2611880801327	39.186	0.15749	39.186	39.125	39.282	0					9	5	2	0	0	0	0.16002	1	14913	14913		66.429	5.4573	1	135010			27021	23123	18251	18315	27378	27378					-0.0027146004947553593
MKILFICH	8	Unmodified	_MKILFICH_					0	0	0		ENST00000483888.6_1_6:75904564-75904627:-|nuORF	ENST00000483888.6_1_6:75904564-75904627:-|nuORF	ENST00000483888.6_1_6:75904564-75904627:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.27423095703125	2	502.774634	1003.53471	-2.0563	-0.0010339	1.2313	0.00061907	-0.82502	-0.0004148	503.2759644223867	28.47	0.36865	28.47	28.27	28.639	0					18	9	3	0	0	0	0.68754	1	9462	9462		35.201	2.3883	1	124010			27022	9985	18252	18316	27379	27379					0.03308853912642462
MKKAEKLDT	9	Unmodified	_MKKAEKLDT_					0	0	0			REV__chr20:6079577-6085066|126|10.71|0.12|6.5|-|2|FERMT1,FERMT1|1	REV__chr20:6079577-6085066|126|10.71|0.12|6.5|-|2|FERMT1,FERMT1|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.29296875	2	532.294442	1062.57433	-1.2653	-0.0006735	-1.0779	-0.00057375	-2.3432	-0.0012472	532.2938903241256	27.989	0.34854	27.989	27.892	28.24	0					11	8	2	0	0	0	0.056004	1	9218	9218		93.143	18.1	1	258510	+		27023	12486	18253	18317	27380	27380					0.045546523970415365
MKKAQRNI	8	Unmodified	_MKKAQRNI_					0	0	0			REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7872314453125	2	494.789661	987.564769	-2.4769	-0.0012256	-1.6418	-0.00081235	-4.1187	-0.0020379	494.7884148710651	38.774	0.12945	38.774	38.687	38.816	0					10	6	2	0	0	0	0.60719	1	13840	13840		47.916	3.7988	1	104250	+		27024	21739	18254	18318	27381	27381					0.0704892890219071
MKKHQSDLK	9	Unmodified	_MKKHQSDLK_					0	0	0		ENST00000485761.1_1_1:208057818-208072476:-|nuORF;nc|ENSG00000174059|P28906-2|CD34;ENSG00000174059|ENST00000310833|CD34	ENST00000485761.1_1_1:208057818-208072476:-|nuORF	ENST00000485761.1_1_1:208057818-208072476:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.8043823242188	2	557.805508	1113.59646	-0.8783	-0.00048992	-1.1595	-0.00064679	-2.0378	-0.0011367	557.8049544709153	18.232	0.15514	18.232	18.18	18.335	0					12	4	4	0	0	0	0.17062	1	4721	4721		49.536	0	1	882360			27025	6469	18255	18319	27382	27382					0.044208768654925734
MKKLVKPNE	9	Unmodified	_MKKLVKPNE_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8187255859375	2	543.820627	1085.6267	-1.4925	-0.00081164	-1.0258	-0.00055787	-2.5183	-0.0013695	543.8200618574024	27.37	0.29709	27.37	27.279	27.576	0					16	7	3	0	0	0	0.029571	1	8933	8933		82.75	20.643	1	622640	+		27026	16660	18256	18320	27383	27383					0.08731235530694903
MKKQKMGY	8	Unmodified	_MKKQKMGY_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.26947021484375	2	507.267173	1012.51979	0.092938	4.7144E-05	4.0261	0.0020423	4.1191	0.0020895	507.2695433617968	32.196	0.17345	32.196	32.076	32.25	0					7	5	2	0	0	0	0.68754	1	11170	11170		35.201	4.6971	1	46742	+		27027	15336	18257	18321	27384	27384					0.014033620446639361
MKKRRKEM	8	Unmodified	_MKKRRKEM_					0	0	0			REV__ZC3H14|p.K307Nfs*48|1|0.26|ENSG00000100722|chr14:88574746-88574746|A/-|frameshift_variant	REV__ZC3H14|p.K307Nfs*48|1|0.26|ENSG00000100722|chr14:88574746-88574746|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.81982421875	2	553.817896	1105.62124	3.6185	0.002004	0.092518	5.1238E-05	3.711	0.0020552	553.8178703524597	26.657	0.51886	26.657	26.366	26.885	0					27	10	4	0	0	0	0.57171	1	9442	9442		42.396	0	1	1058000	+		27028	22303	18258	18322	27385	27385					0.0726523346720569
MKKSVCLDR	9	Unmodified	_MKKSVCLDR_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.290283203125	2	540.288637	1078.56272	3.471	0.0018753	-0.12567	-6.7899E-05	3.3453	0.0018074	540.2883587571578	43.602	0.25296	43.602	43.512	43.765	0					10	7	2	0	0	0	0.055856	1	17452	17452		93.195	0	1	98903			27029	6711	18259	18323	27386	27386					0.026581321020785253
MKLCVVKKK	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))KLC(Carbamidomethyl (C))VVKKK_	MKLC(1)VVKKK	M(1)KLCVVKKK	MKLC(51)VVKKK	M(51)KLCVVKKK	0	1	1		ENST00000231524.13_1_5:64905191-64905227:-|nuORF	ENST00000231524.13_1_5:64905191-64905227:-|nuORF	ENST00000231524.13_1_5:64905191-64905227:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.3449096679688	2	575.345954	1148.67736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.929	1	17.929	17.429	18.429	0								0	0	0	0.19749	1	4595	4595		51.335	10.557	1				27030	8204	18260	18324	27387	27387	359	333			0.1089644158403189
MKLKCIFGF	9	Unmodified	_MKLKCIFGF_					0	0	0		ENST00000484396.1_1_20:24988400-24990223:-|nuORF	ENST00000484396.1_1_20:24988400-24990223:-|nuORF	ENST00000484396.1_1_20:24988400-24990223:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.79541015625	2	543.795566	1085.57658	0.35026	0.00019047	-0.15468	-8.4114E-05	0.19558	0.00010636	544.2972886112371	44.903	0.22017	44.903	44.835	45.056	0					17	13	2	0	0	0	0.43426	1	16796	16796		38.806	0	1	98983			27031	9993	18261	18325	27388	27388					0.0372140960116667
MKLKDTLKS	9	Unmodified	_MKLKDTLKS_					0	0	0		RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant;nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant	RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.2134704589844	3	355.210849	1062.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.441	1	22.441	21.941	22.941	0								0	0	0	0.33579	1	7464	7464		28.577	5.054	1				27032	11998	18262	18326	27389	27389					0.08191529293776512
MKLKKNMQ	8	Oxidation (M)	_MKLKKNM(Oxidation (M))Q_		MKLKKNM(1)Q		M(-56)KLKKNM(56)Q	0	0	1			REV__nc|ENSG00000114487|Q86VD1-2|MORC1	REV__nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7879638671875	2	518.78573	1035.55691	3.3488	0.0017373	0.33217	0.00017233	3.681	0.0019096	518.7859675889973	43.697	0.29208	43.697	43.579	43.871	0					23	8	4	0	0	0	0.49216	1	17481	17481		60.972	60.972	2	910050	+		27033	20982	18263	18327	27390	27390		752			0.0405503359040722
MKLRDFFGS	9	Unmodified	_MKLRDFFGS_					0	0	0		ENSG00000149328|ENST00000535456|GLB1L2;ENST00000529077.5_1_11:134236970-134242406:+|nuORF	ENSG00000149328|ENST00000535456|GLB1L2	ENSG00000149328|ENST00000535456|GLB1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.785400390625	2	550.781502	1099.54845	3.7283	0.0020535	3.6467	0.0020086	7.3751	0.004062	550.7837924163989	11.886	0.38052	11.886	11.797	12.177	0					25	10	4	0	0	0	0.41113	1	2401	2401		40.778	1.5253	1	2529900			27034	4878	18264	18328	27391	27391					0.0026580294545510696
MKMLKVQLK	9	2 Oxidation (M)	_M(Oxidation (M))KM(Oxidation (M))LKVQLK_		M(1)KM(1)LKVQLK		M(70)KM(70)LKVQLK	0	0	2		CELF6|p.R466M|1|0.27|ENSG00000140488|chr15:72287314-72287314|C/A|missense_variant	CELF6|p.R466M|1|0.27|ENSG00000140488|chr15:72287314-72287314|C/A|missense_variant	CELF6|p.R466M|1|0.27|ENSG00000140488|chr15:72287314-72287314|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.22784423828125	3	384.227734	1149.66137	-0.58168	-0.0002235	0.7979	0.00030657	0.21622	8.3077E-05	384.228100085643	21.696	0.76766	21.696	21.636	22.404	0					21	15	2	0	0	0	0.1424	1	7113	7113		69.628	18.292	1	821710			27035	466	18265	18329	27392	27392		23;24			0.0925273534714961
MKNLDISH	8	Unmodified	_MKNLDISH_					0	0	0		STT3A|p.R437H|1|0.32|ENSG00000134910|chr11:125612692-125612692|G/A|missense_variant	STT3A|p.R437H|1|0.32|ENSG00000134910|chr11:125612692-125612692|G/A|missense_variant	STT3A|p.R437H|1|0.32|ENSG00000134910|chr11:125612692-125612692|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.24481201171875	2	479.244752	956.474951	-1.425	-0.00068293	1.1962	0.00057326	-0.22883	-0.00010966	479.24551556540956	19.19	0.10369	19.19	19.117	19.221	0					6	3	2	0	0	0	0.60719	1	5156	5156		47.916	0.25827	1	169190			27036	22498	18266	18330	27393	27393					-0.005027454970218059
MKNLLTEK	8	Unmodified	_MKNLLTEK_					0	0	0		ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000465646.5_1_22:31904270-31924850:+|nuORF;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;ENST00000465437.5_1_22:31904270-31924785:+|nuORF	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7781982421875	2	488.778428	975.542302	-0.076664	-3.7472E-05	-1.0249	-0.00050094	-1.1015	-0.00053841	488.7781579866808	31.493	0.28692	31.493	31.398	31.685	0					15	6	4	0	0	0	0.43813	1	11869	11869		66.429	5.4573	1	342450			27037	7529	18267	18331	27394	27394					0.05355284713925812
MKNNPKRC	8	Unmodified	_MKNNPKRC_					0	0	0			REV__tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	REV__tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.75360107421875	2	495.752221	989.48989	2.8526	0.0014142	0.73595	0.00036485	3.5885	0.001779	495.7526235385625	25.132	1.0563	25.132	24.645	25.701	0					74	21	5	0	0	0	0.41952	1	8658	8658		68.485	2.0554	1	13226000	+		27038	22091	18268	18332	27395	27395					-0.005275769006857445
MKNQQSSSL	9	Unmodified	_MKNQQSSSL_					0	0	0		ENST00000557314.5_1_14:20839728-20850189:-|nuORF;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant	ENST00000557314.5_1_14:20839728-20850189:-|nuORF;nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.75048828125	2	511.750398	1021.48624	-0.35416	-0.00018124	0.22375	0.0001145	-0.13042	-6.674E-05	511.75056474436633	29.55	0.13957	29.55	29.486	29.625	0					9	5	2	0	0	0	0.22837	1	9651	9651		58.23	2.7257	1	134460			27039	3603;10672	18269	18333	27396	27396					-0.023639681935378576
MKPRRLPM	8	Oxidation (M)	_MKPRRLPM(Oxidation (M))_		MKPRRLPM(1)		M(-40)KPRRLPM(40)	0	0	1			REV__TACC2|p.A2295T|1|0.22|ENSG00000138162|chr10:122211308-122211308|G/A|missense_variant	REV__TACC2|p.A2295T|1|0.22|ENSG00000138162|chr10:122211308-122211308|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2525634765625	2	522.793889	1043.57323	0.78828	0.00041211	2.7053	0.0014143	3.4935	0.0018264	522.7952929207808	27.632	0.29447	27.632	27.423	27.718	0					18	9	3	0	0	0	0.6282	1	8488	8488		44.531	10.359	2	255380	+		27040	14961	18270	18334	27397	27397		565			0.05318159547164214
MKRAIMGLF	9	Unmodified	_MKRAIMGLF_					0	0	0			REV__CALML3|p.M73I|1|0.41|ENSG00000178363|chr10:5525304-5525304|G/T|missense_variant	REV__CALML3|p.M73I|1|0.41|ENSG00000178363|chr10:5525304-5525304|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7984619140625	2	533.79864	1065.58273	-1.3154	-0.00070216	1.4264	0.0007614	0.11098	5.924E-05	533.7994053097035	28.139	0.26362	28.139	28.02	28.283	0					17	6	4	0	0	0	0.16524	1	9285	9285		65.803	11.027	1	832890	+		27041	12321	18271	18335	27398	27398					0.05255927832695306
MKRALMMMK	9	Unmodified	_MKRALMMMK_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.53656005859375	3	380.535516	1138.58472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.859	1	21.859	21.359	22.359	0								0	0	0	0.17378	1	7312	7312		54.776	5.3348	1				27042	8108	18272	18336	27399	27399					0.020968972546370424
MKRESELEL	9	Unmodified	_MKRESELEL_					0	0	0		nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2	nc|ENSG00000100320|O43251-8|RBFOX2	nc|ENSG00000100320|O43251-8|RBFOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.865478515625	3	378.865629	1133.57506	-0.459	-0.0001739	0.1837	6.9599E-05	-0.2753	-0.0001043	378.86563757165084	23.054	0.26158	23.054	22.939	23.201	0					15	5	4	0	0	0	0.4966	1	7744	7744		26.063	0	1	296180			27043	2003	18273	18337	27400	27400					0.013614470461106976
MKRKLCGKG	9	Unmodified	_MKRKLCGKG_					0	0	0		ENST00000485230.5_2_3:112970233-112970398:+|nuORF	ENST00000485230.5_2_3:112970233-112970398:+|nuORF	ENST00000485230.5_2_3:112970233-112970398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7955322265625	2	510.793889	1019.57323	1.209	0.00061753	1.6094	0.00082209	2.8184	0.0014396	510.7949129993761	21.812	0.36439	21.812	21.608	21.972	0					10	7	3	0	0	0	0.22377	1	7304	7304		58.782	7.5893	1	531490			27044	10006	18274	18338	27401	27401					0.06422159547173578
MKRLSMEI	8	2 Oxidation (M)	_M(Oxidation (M))KRLSM(Oxidation (M))EI_		M(1)KRLSM(1)EI		M(61)KRLSM(61)EI	0	0	2		nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2;ENST00000432151.5_1_22:30070843-30090795:+|nuORF	nc|ENSG00000186575|P35240-4|NF2	nc|ENSG00000186575|P35240-4|NF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.269287109375	2	520.26737	1038.52019	3.3715	0.0017541	0.35551	0.00018496	3.727	0.001939	520.2675045365211	40.334	0.41442	40.334	40.205	40.619	0					29	9	5	0	0	0	0.49216	1	15991	15991		60.972	60.972	1	2190100			27045	7149	18275	18339	27402	27402		287;288			0.002467369738724301
MKRNRWLQMWR	11	Unmodified	_MKRNRWLQMWR_					0	0	0		ENST00000496445.5_1_10:114207222-114224375:+|nuORF	ENST00000496445.5_1_10:114207222-114224375:+|nuORF	ENST00000496445.5_1_10:114207222-114224375:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.6171264648438	3	535.618618	1603.83402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.007	1	40.007	39.507	40.507	0								0	0	0	0.45674	1	15853	15853		10.104	4.4051	1				27046	10118	18276	18340	27403	27403					0.056261195270508324
MKRPSTEM	8	Unmodified	_MKRPSTEM_					0	0	0		ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant	ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant	ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2424011230469	2	490.238612	978.462672	3.4888	0.0017104	3.0431	0.0014918	6.5319	0.0032022	490.2401889729453	23.132	0.2294	23.132	23.006	23.236	0					14	7	3	0	0	0	0.32408	1	6902	6902		79.939	11.455	1	194240			27047	11115	18277	18341	27404	27404					-0.027421052317208705
MKRSKMPNK	9	Unmodified	_MKRSKMPNK_					0	0	0			REV__ENST00000266069.4_1_20:61572861-61572942:+|nuORF	REV__ENST00000266069.4_1_20:61572861-61572942:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.3120727539062	2	560.309903	1118.60525	3.4698	0.0019442	0.4801	0.00026901	3.9499	0.0022132	560.3101229059458	39.86	0.37473	39.86	39.718	40.092	0					21	8	4	0	0	0	0.24095	1	15773	15773		56.721	1.9447	1	689830	+		27048	18081	18278	18342	27405	27405					0.05069527230330095
MKSGRTSRR	9	Unmodified	_MKSGRTSRR_					0	0	0			REV__nc|ENSG00000279688|A6NL99|AQP7P3	REV__nc|ENSG00000279688|A6NL99|AQP7P3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7990112304688	2	539.798549	1077.58254	-0.089061	-4.8075E-05	0.058469	3.1562E-05	-0.030592	-1.6514E-05	539.7986339306788	35.609	0.20076	35.609	35.512	35.712	0					26	10	3	0	0	0	0.42902	1	12027	12027		39.253	8.7492	1	275960	+		27049	16032	18279	18343	27406	27406					0.04685644157052593
MKSLKVMR	8	Oxidation (M)	_MKSLKVM(Oxidation (M))R_		MKSLKVM(1)R		M(-54)KSLKVM(54)R	0	0	1		ENST00000492807.6_1_6:146480699-146625814:+|nuORF	ENST00000492807.6_1_6:146480699-146625814:+|nuORF	ENST00000492807.6_1_6:146480699-146625814:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7895812988281	2	504.788272	1007.56199	2.932	0.0014801	-0.29158	-0.00014718	2.6404	0.0013329	504.7880820084368	41.436	0.30093	41.436	41.256	41.557	0					12	7	2	0	0	0	0.51931	1	16469	16469		58.23	58.23	2	744500			27050	10085	18280	18344	27407	27407		404			0.0585133745304347
MKSVVCKM	8	Unmodified	_MKSVVCKM_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.73956298828125	2	463.237027	924.459501	0.70222	0.00032529	-2.9706	-0.0013761	-2.2683	-0.0010508	463.2344349668258	31.145	0.58311	31.145	30.854	31.438	0					49	13	5	0	0	0	0.54629	1	11701	11701		55.504	3.205	1	1433000			27051	2173	18281	18345	27408	27408					-0.00575071610080613
MKTIKCIY	8	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))KTIKC(Carbamidomethyl (C))IY_	MKTIKC(1)IY	M(1)KTIKCIY	MKTIKC(56)IY	M(56)KTIKCIY	0	1	1			REV__ENSG00000180998|ENST00000321662|GPR137C	REV__ENSG00000180998|ENST00000321662|GPR137C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.1892395019531	3	358.189168	1071.54567	0.72217	0.00025867	-0.50259	-0.00018002	0.21958	7.8652E-05	358.18898155746797	26.277	0.26083	26.277	26.204	26.465	0					14	6	4	0	0	0	0.54629	1	9043	9043		55.504	14.078	1	529350	+		27052	16832	18282	18346	27409	27409	597	643			0.012762114962697524
MKTSLRSG	8	Unmodified	_MKTSLRSG_					0	0	0		ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.2380676269531	2	440.23947	878.464386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.733	1	24.733	24.233	25.233	0								0	0	0	1.7419	1	7609	7609		32.812	4.9302	1				27053	7368	18283	18347	27410	27410					0.02029271848539338
MKVQLVMVG	9	Unmodified	_MKVQLVMVG_					0	0	0		ENST00000506393.5_1_5:140047926-140048692:+|nuORF	ENST00000506393.5_1_5:140047926-140048692:+|nuORF	ENST00000506393.5_1_5:140047926-140048692:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7810974121094	2	502.785198	1003.55584	-0.48504	-0.00024387	-3.8965	-0.0019591	-4.3815	-0.002203	502.78440746829324	32.998	0.54372	32.998	32.623	33.167	0					27	11	4	0	0	0	0.058689	1	12375	12375		92.191	12.478	1	1216000			27054	10192	18284	18348	27411	27411					0.054208192215355666
MKVVQLWI	8	Unmodified	_MKVVQLWI_					0	0	0			REV__ENST00000379079.6_2_11:32409667-32409850:-|nuORF	REV__ENST00000379079.6_2_11:32409667-32409850:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8024597167969	2	508.801706	1015.58886	0.91292	0.00046449	1.1386	0.00057934	2.0515	0.0010438	508.8022493425217	41.563	0.19453	41.563	41.491	41.685	0					15	9	2	0	0	0	0.65276	1	15781	15781		40.573	1.3198	1	130240	+		27055	18754	18285	18349	27412	27412					0.08168769335873094
MKWQEQPK	8	Unmodified	_MKWQEQPK_					0	0	0			REV__ENST00000264709.7_2_2:25498379-25505441:-|nuORF	REV__ENST00000264709.7_2_2:25498379-25505441:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7749633789062	2	537.773677	1073.5328	3.3477	0.0018003	-0.7371	-0.0003964	2.6106	0.0014039	537.7732642979093	30.466	0.20141	30.466	30.359	30.561	0					11	4	3	0	0	0	0.2678	1	11272	11272		93.195	10.955	1	2406600	+		27056	18062	18286	18350	27413	27413					-0.0010248357161799504
MKWSHAPWPAV	11	Unmodified	_MKWSHAPWPAV_					0	0	0			REV__ENST00000574733.5_1_16:4519403-4524387:-|nuORF	REV__ENST00000574733.5_1_16:4519403-4524387:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.220947265625	3	437.221859	1308.64375	-0.55953	-0.00024464	-1.6696	-0.00073	-2.2292	-0.00097464	437.2211191646916	25.676	0.301	25.676	25.565	25.866	0					8	4	3	0	0	0	0.66915	1	9033	9033		30.569	0	1	309520	+		27057	20406	18287	18351	27414	27414					0.0017715613648761064
MKWVQFSNLH	10	Unmodified	_MKWVQFSNLH_					0	0	0		ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	645.327392578125	2	645.326608	1288.63866	0.2215	0.00014294	-0.32834	-0.00021188	-0.10684	-6.8946E-05	645.3264712291909	40.05	0.21823	40.05	39.993	40.212	0					22	12	3	0	0	0	0.74461	1	12960	12960		14.137	0	1	191650			27058	1230	18288	18352	27415	27415					0.005888522738814572
MKYGMSIHRL	10	Unmodified	_MKYGMSIHRL_					0	0	0			REV__ENST00000553557.5_1_X:53113753-53114504:+|nuORF	REV__ENST00000553557.5_1_X:53113753-53114504:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.5506591796875	3	412.551099	1234.63147	-0.43058	-0.00017764	-1.3784	-0.00056867	-1.809	-0.00074631	412.55049849654495	24.019	0.66714	24.019	23.88	24.547	0					25	13	3	0	0	0	0.38179	1	8247	8247		58.246	1.0975	1	286150	+		27059	16970	18289	18353	27416	27416					0.02353796401780528
MKYTFTMR	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MKYTFTMR_					1	0	0			REV__ENST00000366787.7_1_6:169617590-169617689:-|nuORF	REV__ENST00000366787.7_1_6:169617590-169617689:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.2697143554688	2	560.269912	1118.52527	1.2818	0.00071813	-1.6392	-0.00091837	-0.3574	-0.00020024	560.2692160467892	30.257	0.28985	30.257	30.159	30.449	0					21	10	3	0	0	0	0.53424	1	9613	9613		56.721	15.943	1	364730	+		27060	18588	18290	18354	27417	27417					-0.02924959163510721
MLACFKLR	8	Unmodified	_MLACFKLR_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2713317871094	2	491.272258	980.529963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.615	1	38.615	38.115	39.115	0								0	0	0	1.7419	1	13017	13017		26.796	0.10319	1				27061	2296	18291	18355	27418	27418					0.03891969769892967
MLADTDLRM	9	Oxidation (M)	_MLADTDLRM(Oxidation (M))_		MLADTDLRM(1)		M(-69)LADTDLRM(69)	0	0	1		OR51B4|p.G70R|1|0.12|ENSG00000183251|chr11:5301739-5301739|C/T|missense_variant	OR51B4|p.G70R|1|0.12|ENSG00000183251|chr11:5301739-5301739|C/T|missense_variant	OR51B4|p.G70R|1|0.12|ENSG00000183251|chr11:5301739-5301739|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2536010742188	2	541.254459	1080.49437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.013	1	47.013	46.513	47.513	0								0	0	0	0.11184	1	18790	18790		68.787	8.4929	2				27062	11881	18292	18356	27419	27419		466			-0.042661572684210114
MLAEAREKS	9	Unmodified	_MLAEAREKS_					0	0	0			REV__HEATR1|p.M2021I|1|0.07|ENSG00000119285|chr1:236554613-236554613|C/T|missense_variant	REV__HEATR1|p.M2021I|1|0.07|ENSG00000119285|chr1:236554613-236554613|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7711181640625	2	517.768591	1033.52263	3.3309	0.0017246	1.0272	0.00053185	4.3581	0.0022565	517.768778030228	47.465	0.14616	47.465	47.37	47.516	0					11	8	2	0	0	0	0.42902	1	18939	18939		39.253	8.7492	1	67933	+		27063	14238	18293	18357	27420	27420					0.007209087031696981
MLAKGIKQLYG	11	Unmodified	_MLAKGIKQLYG_					0	0	0			REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.3560180664062	2	611.354834	1220.69511	2.9519	0.0018047	-0.43121	-0.00026362	2.5207	0.001541	611.3544402529026	53.752	1.0149	53.752	53.384	54.398	0					119	61	3	0	0	0	0.77686	1	20665	20665		19.997	1.7347	1	217460	+		27064	22218	18294	18358	27421	27421					0.09359480110538243
MLAKRPLIT	9	Unmodified	_MLAKRPLIT_					0	0	0		sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1;sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1	sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.82958984375	2	521.825712	1041.63687	1.777	0.00092728	1.3963	0.00072865	3.1733	0.0016559	522.3270548392896	32.223	0.37959	32.223	32.081	32.46	0					24	8	4	0	0	0	0.28897	1	12266	12266		44.117	3.3386	1	1215900			27065	22443	18295	18359	27422	27422					0.11771843255905878
MLALVSDNTV	10	Unmodified	_MLALVSDNTV_					0	0	0		CON__P07224	CON__P07224	CON__P07224	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7782592773438	2	531.778625	1061.5427	0.12153	6.4625E-05	-0.51413	-0.0002734	-0.39261	-0.00020878	531.7781601570307	36.529	0.18967	36.529	36.447	36.636	0					7	5	2	0	0	0	0.44292	1	13774	13774		39.253	0	1	171490		+	27066	633	18296	18360	27423	27423					0.014386596430995269
MLAPAGALN	9	Unmodified	_MLAPAGALN_					0	0	0			REV__ENST00000454547.1_1_1:19209079-19212092:-|nuORF	REV__ENST00000454547.1_1_1:19209079-19212092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2292785644531	2	429.231113	856.447674	-0.59241	-0.00025428	-2.9088	-0.0012486	-3.5012	-0.0015028	429.22996100646554	39.679	0.47451	39.679	39.573	40.048	0					25	18	2	0	0	0	0.41354	1	15100	15100		40.573	3.5441	1	240640	+		27067	12137	18297	18361	27424	27424					0.013707709625919051
MLARMNKIN	9	Oxidation (M)	_MLARM(Oxidation (M))NKIN_		MLARM(1)NKIN		M(-66)LARM(66)NKIN	0	0	1		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7958984375	2	553.794086	1105.57362	3.6195	0.0020044	-1.2143	-0.00067248	2.4052	0.001332	553.7937241474152	33.269	0.35651	33.269	33.076	33.432	0					15	7	3	0	0	0	0.087582	1	12647	12647		82.305	11.489	2	650570			27068	6942	18298	18362	27425	27425		283			0.02505534476381399
MLARTMRN	8	Unmodified	_MLARTMRN_					0	0	0			REV__ENSG00000025772|ENST00000372813|TOMM34	REV__ENSG00000025772|ENST00000372813|TOMM34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7618408203125	2	496.760046	991.50554	2.8892	0.0014352	-0.15079	-7.4906E-05	2.7384	0.0013603	496.7599040040567	29.397	1.1543	29.397	28.877	30.031	0					64	23	5	0	0	0	0.44433	1	10743	10743		65.803	0	1	3616000	+		27069	12956	18299	18363	27426	27426					0.009447096163626156
MLCLQPSLN	9	Unmodified	_MLCLQPSLN_					0	0	0			REV__ENST00000472581.1_1_6:31913911-31914451:+|nuORF	REV__ENST00000472581.1_1_6:31913911-31914451:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7547912597656	2	509.756638	1017.49872	1.3543	0.00069035	-3.2626	-0.0016631	-1.9083	-0.00097277	509.7541262115173	38.317	0.52171	38.317	38.072	38.594	0					17	11	2	0	0	0	0.19605	1	15063	15063		62.107	4.2961	1	296970	+		27070	17704	18300	18364	27427	27427					-0.009326480548565996
MLCTYKLQ	8	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LC(Carbamidomethyl (C))TYKLQ_	MLC(1)TYKLQ	M(1)LCTYKLQ	MLC(85)TYKLQ	M(85)LCTYKLQ	0	1	1			REV__SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	REV__SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7599487304688	2	536.76192	1071.50929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.937	1	18.937	18.437	19.437	0								0	0	0	1.7419	1	5626	5626		85.359	10.316	1		+		27071	21534	18301	18365	27428	27428	740	780			-0.023606654004424854
MLDNLTVHP	9	Oxidation (M)	_M(Oxidation (M))LDNLTVHP_		M(1)LDNLTVHP		M(51)LDNLTVHP	0	0	1		CNOT6L|p.A163T|1|0.4|ENSG00000138767|chr4:77756865-77756865|C/T|missense_variant	CNOT6L|p.A163T|1|0.4|ENSG00000138767|chr4:77756865-77756865|C/T|missense_variant	CNOT6L|p.A163T|1|0.4|ENSG00000138767|chr4:77756865-77756865|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.26611328125	2	528.263142	1054.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.823	1	39.823	39.323	40.323	0								0	0	0	0.19749	1	13371	13371		51.335	8.861	1				27072	573	18302	18366	27429	27429		31			-0.01334493671151904
MLDVFEKL	8	Unmodified	_MLDVFEKL_					0	0	0			REV__ENSG00000129151|ENST00000263182|BBOX1	REV__ENSG00000129151|ENST00000263182|BBOX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.181884765625	3	332.180778	993.520504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.863	1	18.863	18.363	19.363	0								0	0	0	1.7419	1	5009	5009		17.365	0.89182	1		+		27073	14540	18303	18367	27430	27430					0.02348479965360184
MLELLVQKK	9	Oxidation (M)	_M(Oxidation (M))LELLVQKK_		M(1)LELLVQKK		M(58)LELLVQKK	0	0	1		ENSG00000143207|ENST00000367669|COP1;ENST00000579008.1_1_18:8412788-8413139:+|nuORF;nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1	ENSG00000143207|ENST00000367669|COP1	ENSG00000143207|ENST00000367669|COP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.5625915527344	3	373.226499	1116.65767	3.2219	0.0012025	-0.011843	-4.4201E-06	3.21	0.0011981	373.22639690318204	11.764	0.10551	11.764	11.698	11.804	0					8	5	2	0	0	0	0.22837	1	2342	2342		58.23	7.0372	1	41960			27074	4532	18304	18368	27431	27431		188			0.10400388844914232
MLENYRNLF	9	Unmodified	_MLENYRNLF_					0	0	0		nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ZNF735|p.L55M|1|0.09|ENSG00000223614|chr7:64213215-64213215|C/A|missense_variant;ENST00000330692.11_1_11:3384610-3394821:-|nuORF;nc|ENSG00000005801|O14628-8|ZNF195;ZNF735|p.K127Nfs*6|4|0.39|ENSG00000223614|chr7:64219426-64219426|A/-|frameshift_variant;ZNF735|p.K189Nfs*12|1|0.14|ENSG00000223614|chr7:64219613-64219613|A/-|frameshift_variant;ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant;ENSG00000223614|ENST00000429565|ZNF735;nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-5|ZNF195	nc|ENSG00000005801|O14628-5|ZNF195	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2994384765625	2	600.297516	1198.58048	3.1197	0.0018728	-0.090097	-5.4085E-05	3.0296	0.0018187	600.297548552849	29.332	0.90823	29.332	29.174	30.082	0					40	18	3	0	0	0	0.48389	1	10720	10720		34.173	0.25091	1	1521400			27075	11412	18305	18369	27432	27432					-0.010868293714338506
MLESSSVAN	9	Unmodified	_MLESSSVAN_					0	0	0			REV__ENST00000586664.1_1_19:32873361-32873986:+|nuORF	REV__ENST00000586664.1_1_19:32873361-32873986:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.21685791015625	2	469.2184	936.422247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.507	1	32.507	32.007	33.007	0								0	0	0	0.27025	1	11311	11311		40.778	0.20554	1		+		27076	16280	18306	18370	27433	27433					-0.048507483504977245
MLFYTNMY	8	Unmodified	_MLFYTNMY_					0	0	0		LPAR6|p.S92P|1|0.24|ENSG00000139679|chr13:48412150-48412150|A/G|missense_variant;LPAR6|p.S92F|1|0.33|ENSG00000139679|chr13:48412149-48412149|G/A|missense_variant;LPAR6|p.V233Cfs*30|1|0.79|ENSG00000139679|chr13:48411727-48411728|-/A|frameshift_variant;ENSG00000139679|ENST00000620633|LPAR6	LPAR6|p.S92P|1|0.24|ENSG00000139679|chr13:48412150-48412150|A/G|missense_variant	LPAR6|p.S92P|1|0.24|ENSG00000139679|chr13:48412150-48412150|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.7361450195312	2	541.737914	1081.46127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.066	1	38.066	37.566	38.566	0								0	0	0	1.7419	1	14455	14455		37.159	1.5408	1				27077	4344	18307	18371	27434	27434					-0.07619739320466579
MLGIYSHW	8	Unmodified	_MLGIYSHW_					0	0	0		ATP1B3|p.K221Nfs*26|1|0.39|ENSG00000069849|chr3:141922052-141922052|A/-|frameshift_variant	ATP1B3|p.K221Nfs*26|1|0.39|ENSG00000069849|chr3:141922052-141922052|A/-|frameshift_variant	ATP1B3|p.K221Nfs*26|1|0.39|ENSG00000069849|chr3:141922052-141922052|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.743408203125	2	503.744388	1005.47422	-0.056369	-2.8396E-05	-1.8046	-0.00090907	-1.861	-0.00093747	503.743438314837	19.792	0.10157	19.792	19.727	19.829	0					6	3	2	0	0	0	0.68754	1	5197	5197		35.201	3.2459	1	69551			27078	256	18308	18372	27435	27435					-0.028295401460809444
MLGQTPTKE	9	Unmodified	_MLGQTPTKE_					0	0	0		ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.75567626953125	2	502.757692	1003.50083	-2.0636	-0.0010375	-1.4871	-0.00074765	-3.5507	-0.0017852	502.7568784148854	35.831	0.24978	35.831	35.681	35.931	0					15	9	2	0	0	0	0.35021	1	12772	12772		45.972	0	1	154050			27079	2126	18309	18373	27436	27436					-0.0007789604542267625
MLGRIVFAW	9	Unmodified	_MLGRIVFAW_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;ENST00000541442.5_1_16:31508264-31519694:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.8057861328125	2	546.80478	1091.59501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25	1	25	24.5	25.5	0								0	0	0	0.34907	1	7721	7721		25.45	0	1				27080	4404	18310	18374	27437	27437					0.0528728756739838
MLGSLLHW	8	Unmodified	_MLGSLLHW_					0	0	0		ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.75616455078125	2	478.754756	955.494958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.782	1	33.782	33.282	34.282	0								0	0	0	1.7419	1	11358	11358		37.028	0	1				27081	3942	18311	18375	27438	27438					0.01543050233590293
MLHCLIFQSPS	11	Unmodified	_MLHCLIFQSPS_					0	0	0		ENST00000606851.5_1_6:22194461-22194572:+|nuORF	ENST00000606851.5_1_6:22194461-22194572:+|nuORF	ENST00000606851.5_1_6:22194461-22194572:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	638.3145141601562	2	638.314851	1274.61515	-0.3719	-0.00023739	-0.078885	-5.0354E-05	-0.45079	-0.00028774	638.3146976925105	23.788	0.81485	23.788	23.679	24.494	0					50	16	4	0	0	0	0.7326	1	8229	8229		24.519	24.519	1	913840			27082	11086	18312	18376	27439	27439					-0.011173295549724571
MLHLFVLGA	9	Unmodified	_MLHLFVLGA_					0	0	0			REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.78448486328125	2	500.786056	999.557558	-2.1243	-0.0010638	-0.56696	-0.00028393	-2.6912	-0.0013477	500.7856827773526	23.975	0.078934	23.975	23.915	23.994	0					4	2	2	0	0	0	0.52436	1	7400	7400		29.842	29.842	1	67458	+		27083	15719	18313	18377	27440	27440					0.05776196301769687
MLHTALCMH	9	Unmodified	_MLHTALCMH_					0	0	0			REV__ENSG00000103599|ENST00000335894|IQCH	REV__ENSG00000103599|ENST00000335894|IQCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7447509765625	2	528.743008	1055.47146	3.4605	0.0018297	-0.27651	-0.0001462	3.184	0.0016835	528.7430447576294	46.059	0.21853	46.059	45.957	46.175	0					17	10	2	0	0	0	0.49003	1	18470	18470		33.516	0	1	202290	+		27084	13690	18314	18378	27441	27441					-0.054054548669000724
MLIGILHM	8	Unmodified	_MLIGILHM_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.26031494140625	2	464.261359	926.508165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.716	1	32.716	32.216	33.216	0								0	0	0	1.7419	1	10592	10592		43.626	0	1				27085	4126	18315	18379	27442	27442					0.041971650213099565
MLILAQDR	8	Unmodified	_MLILAQDR_					0	0	0			REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2686767578125	2	480.27077	958.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.453	1	24.453	23.953	24.953	0								0	0	0	1.7419	1	7626	7626		71.296	1.6681	1		+		27086	15520	18316	18380	27443	27443					0.04606417916727423
MLIPTITY	8	Unmodified	_MLIPTITY_					0	0	0			REV__tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	REV__tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7645263671875	2	476.264622	950.514691	-0.41283	-0.00019662	-1.6366	-0.00077946	-2.0495	-0.00097608	476.26370121634665	11.061	0.14684	11.061	10.979	11.126	0					9	5	2	0	0	0	0.78318	1	2177	2177		9.4706	0.64823	1	106780	+		27087	21718	18317	18381	27444	27444					0.037453814536888785
MLKIKWKLP	9	Unmodified	_MLKIKWKLP_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|43|1|sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|43|1|sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|43|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.8684692382812	2	578.86738	1155.72021	3.2579	0.0018859	-1.578	-0.00091344	1.6799	0.00097246	578.8664470356413	23.158	0.16463	23.158	23.053	23.218	0					8	3	3	0	0	0	0.16002	1	7824	7824		50.025	14.406	1	838820			27088	11190	18318	18382	27445	27445					0.14857579703743795
MLKQIWEF	8	Unmodified	_MLKQIWEF_					0	0	0			REV__nc|ENSG00000007038|Q9Y6M0-3|PRSS21	REV__nc|ENSG00000007038|Q9Y6M0-3|PRSS21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.7901611328125	2	547.788795	1093.56304	0.47121	0.00025812	2.3354	0.0012793	2.8066	0.0015374	547.7898775282994	28.882	0.24897	28.882	28.758	29.007	0					16	6	3	0	0	0	0.5676	1	10245	10245		53.351	7.3792	1	523570	+		27089	12865	18319	18383	27446	27446					0.019998750935883436
MLKRFARM	8	Oxidation (M)	_MLKRFARM(Oxidation (M))_		MLKRFARM(1)		M(-53)LKRFARM(53)	0	0	1		ENST00000609196.5_1_1:147102847-147131108:-|nuORF;ENSG00000162836|ENST00000583509|ACP6	ENST00000609196.5_1_1:147102847-147131108:-|nuORF	ENST00000609196.5_1_1:147102847-147131108:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7958984375	2	534.793889	1067.57323	3.3739	0.0018043	0.1285	6.872E-05	3.5024	0.0018731	534.7940176710142	39.154	0.37717	39.154	38.998	39.376	0					21	8	3	0	0	0	0.29779	1	15434	15434		83.287	83.287	2	1522100			27090	5502	18320	18384	27447	27447		221			0.0421415954715485
MLLAGWAW	8	Unmodified	_MLLAGWAW_					0	0	0			REV__ENST00000414276.6_1_1:150238377-150238533:-|nuORF	REV__ENST00000414276.6_1_1:150238377-150238533:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.244384765625	2	474.244024	946.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.585	1	43.585	43.085	44.085	0								0	0	0	1.7419	1	17036	17036		43.626	15.744	1		+		27091	19019	18321	18385	27448	27448					-0.0018833479514341889
MLLEFKAK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MLLEFKAK_					1	0	0		tr|U7T498|U7T498_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00307PE=4SV=1	tr|U7T498|U7T498_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00307PE=4SV=1	tr|U7T498|U7T498_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00307PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.29315185546875	2	511.291171	1020.56779	3.0884	0.0015791	0.83685	0.00042787	3.9252	0.0020069	511.2915291104586	12.567	0.17783	12.567	12.51	12.688	0					10	4	3	0	0	0	0.24328	1	2711	2711		115.46	52.153	1	490720			27092	22987	18322	18386	27449	27449					0.058327592363411895
MLLERLRAV	9	Unmodified	_MLLERLRAV_					0	0	0			REV__KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	REV__KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.8915710449219	3	367.558471	1099.65358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.148	1	39.148	38.648	39.648	0								0	0	0	0.34228	1	15386	15386		26.693	6.6624	1		+		27093	14543	18323	18387	27450	27450					0.10774344141850634
MLLGATIPV	9	Unmodified	_MLLGATIPV_					0	0	0			REV__ENST00000222462.2_1_7:120969115-120969268:+|nuORF	REV__ENST00000222462.2_1_7:120969115-120969268:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7728271484375	2	457.772614	913.530675	0.87918	0.00040246	-1.662	-0.00076082	-0.78284	-0.00035836	457.77177611633306	42.288	0.17665	42.288	42.17	42.347	0					7	4	2	0	0	0	0.50461	1	16870	16870		31.955	5.1588	1	60458	+		27094	17893	18324	18388	27451	27451					0.07045087690596574
MLLGRELR	8	Unmodified	_MLLGRELR_					0	0	0		ENST00000393537.4_1_2:97513863-97513980:-|nuORF	ENST00000393537.4_1_2:97513863-97513980:-|nuORF	ENST00000393537.4_1_2:97513863-97513980:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.295166015625	2	494.292037	986.56952	2.7968	0.0013824	2.3508	0.001162	5.1476	0.0025444	494.29266200151056	40.213	0.31165	40.213	40.08	40.392	0					10	7	2	0	0	0	0.67394	1	15940	15940		37.159	6.6555	1	165990			27095	9157	18325	18389	27452	27452					0.07569813044949569
MLLLDGLIY	9	Unmodified	_MLLLDGLIY_					0	0	0		ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant;nc|ENSG00000154262|Q8N139-2|ABCA6;ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant;ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;ENSG00000154262|ENST00000284425|ABCA6	ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant	ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8007202148438	2	525.798829	1049.5831	3.4519	0.001815	0.35165	0.0001849	3.8036	0.0019999	525.7989779781715	30.396	0.3001	30.396	30.261	30.561	0					11	6	3	0	0	0	0.50461	1	11246	11246		31.955	0	1	1041600			27096	8	18326	18390	27453	27453					0.06029626033569002
MLLLLVPA	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))LLLLVPA_		M(1)LLLLVPA		M(67)LLLLVPA	1	0	1		nc|ENSG00000211795|A0A0B4J262|TRAV8-6	nc|ENSG00000211795|A0A0B4J262|TRAV8-6	nc|ENSG00000211795|A0A0B4J262|TRAV8-6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.284423828125	2	464.282815	926.551076	2.6028	0.0012084	1.5999	0.00074281	4.2027	0.0019513	464.2836073605777	35.106	0.46815	35.106	34.947	35.415	0					30	9	5	0	0	0	0.42924	1	13509	13509		67.327	11.823	1	1816400			27097	11742	18327	18391	27454	27454		461			0.08486258350399112
MLLMTSKLQ	9	2 Oxidation (M)	_M(Oxidation (M))LLM(Oxidation (M))TSKLQ_		M(1)LLM(1)TSKLQ		M(79)LLM(79)TSKLQ	0	0	2			REV__ENST00000506586.1_1_5:93928514-93929327:+|nuORF	REV__ENST00000506586.1_1_5:93928514-93929327:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7932739257812	2	548.790678	1095.5668	3.7981	0.0020844	1.1413	0.00062635	4.9394	0.0027107	548.7913607153691	41.588	0.45033	41.588	41.428	41.878	0					27	12	4	0	0	0	0.099922	1	16527	16527		79.451	17.344	1	975290	+		27098	14975	18328	18392	27455	27455		566;567			0.02284176805142124
MLMASRWQL	9	Oxidation (M)	_M(Oxidation (M))LMASRWQL_		M(1)LMASRWQL		M(38)LM(-38)ASRWQL	0	0	1			REV__ENSG00000114656|ENST00000645291|CFAP92	REV__ENSG00000114656|ENST00000645291|CFAP92	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.2885131835938	2	576.288637	1150.56272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.732	1	36.732	36.232	37.232	0								0	0	0	0.16876	1	14326	14326		55.504	9.5523	2		+		27099	14076	18329	18393	27456	27456		532			-0.0065386789792682976
MLMDDADVA	9	Unmodified	_MLMDDADVA_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7071228027344	2	490.706811	979.399068	-1.2576	-0.00061713	1.2957	0.0006358	0.038041	1.8667E-05	490.707655100086	18.741	0.1548	18.741	18.68	18.835	0					12	5	3	0	0	0	0.26904	1	4952	4952		53.351	10.877	1	131860			27100	997	18330	18394	27457	27457					-0.09145510459495654
MLMVIRLR	8	Unmodified	_MLMVIRLR_					0	0	0		TYMP|p.A77V|1|0.3|ENSG00000025708|chr22:50529323-50529323|G/A|missense_variant	TYMP|p.A77V|1|0.3|ENSG00000025708|chr22:50529323-50529323|G/A|missense_variant	TYMP|p.A77V|1|0.3|ENSG00000025708|chr22:50529323-50529323|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.3168334960938	2	516.314457	1030.61436	0.27737	0.00014321	2.541	0.0013119	2.8184	0.0014552	516.3161678189919	26.418	0.16837	26.418	26.28	26.448	0					8	5	2	0	0	0	0.72381	1	8008	8008		20.482	0	1	68160			27101	23082	18331	18395	27458	27458					0.10027920586617256
MLMYIVVT	8	Unmodified	_MLMYIVVT_					0	0	0			REV__ACSS3|p.P176L|1|0.23|ENSG00000111058|chr12:81134886-81134886|C/T|missense_variant	REV__ACSS3|p.P176L|1|0.23|ENSG00000111058|chr12:81134886-81134886|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2583312988281	2	485.261025	968.507497	-1.2363	-0.00059992	-2.5788	-0.0012514	-3.8151	-0.0018513	485.25928889440456	23.457	0.097544	23.457	23.395	23.493	0					6	3	2	0	0	0	0.66238	1	7058	7058		39.021	1.8624	1	75993	+		27102	12054	18332	18396	27459	27459					0.02198325581593963
MLNKELWE	8	Unmodified	_MLNKELWE_					0	0	0		tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.770751953125	2	531.76806	1061.52157	1.7172	0.00091317	1.895	0.0010077	3.6122	0.0019209	531.76951434748	37.95	0.23523	37.95	37.846	38.081	0					14	8	2	0	0	0	0.43813	1	14880	14880		66.429	2.222	1	185940			27103	22842	18333	18397	27460	27460					-0.006733056657594716
MLNLQIAGL	9	Unmodified	_MLNLQIAGL_					0	0	0		CEP72|p.T549M|1|0.27|ENSG00000112877|chr5:644405-644405|C/T|missense_variant	CEP72|p.T549M|1|0.27|ENSG00000112877|chr5:644405-644405|C/T|missense_variant	CEP72|p.T549M|1|0.27|ENSG00000112877|chr5:644405-644405|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7802734375	2	486.78097	971.547388	0.70104	0.00034126	-2.6638	-0.0012967	-1.9627	-0.00095543	486.7794189907686	38.023	0.40172	38.023	37.818	38.219	0					24	17	2	0	0	0	0.18605	1	14454	14454		63.306	3.0123	1	68625			27104	489	18334	18398	27461	27461					0.06047588576552698
MLNRITELV	9	Unmodified	_MLNRITELV_					0	0	0			REV__AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	REV__AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8102416992188	2	544.810259	1087.60597	0.38468	0.00020958	1.075	0.00058566	1.4597	0.00079523	544.8105732226032	39.596	0.27048	39.596	39.453	39.723	0					33	11	4	0	0	0	0.27123	1	15078	15078		54.776	3.4409	1	224840	+		27105	12189	18335	18399	27462	27462					0.06566645150974182
MLPGWRNLIP	10	Unmodified	_MLPGWRNLIP_					0	0	0			REV__ENSG00000172073|ENST00000303254|TEX37	REV__ENSG00000172073|ENST00000303254|TEX37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.5570983886719	3	399.558471	1195.65358	-2.2462	-0.00089748	-1.1808	-0.0004718	-3.427	-0.0013693	399.5580139110767	24.119	0.43677	24.119	23.949	24.386	0					19	10	3	0	0	0	0.62235	1	7462	7462		31.53	2.3598	1	414740	+		27106	16449	18336	18400	27463	27463					0.06358344141881389
MLPICDCY	8	2 Carbamidomethyl (C)	_MLPIC(Carbamidomethyl (C))DC(Carbamidomethyl (C))Y_	MLPIC(1)DC(1)Y		MLPIC(57)DC(57)Y		0	2	0			REV__ENSG00000150261|ENST00000279783|OR8K1	REV__ENSG00000150261|ENST00000279783|OR8K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.220458984375	2	536.219031	1070.42351	1.8384	0.00098581	0.54434	0.00029189	2.3828	0.0012777	536.219567729038	38.363	0.26202	38.363	38.248	38.51	0					21	9	3	0	0	0	0.527	1	15029	15029		57.453	8.2419	1	339960	+		27107	15440	18337	18401	27464	27464	565;566				-0.1088857357760844
MLPPFGSPGA	10	Unmodified	_MLPPFGSPGA_					0	0	0			REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2419738769531	2	487.244221	972.473888	-0.083716	-4.079E-05	-4.0577	-0.0019771	-4.1414	-0.0020179	487.242169764404	19.438	0.11477	19.438	19.38	19.495	0					4	2	2	0	0	0	0.42631	1	6155	6155		53.351	9.2347	1	547740	+		27108	12930	18338	18402	27465	27465					-0.013449598659349249
MLPPSKTISN	10	Unmodified	_MLPPSKTISN_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2990112304688	2	544.294442	1086.57433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.596	1	39.596	39.096	40.096	0								0	0	0	0.39264	1	15581	15581		20.947	0	1		+		27109	12696	18339	18403	27466	27466					0.03450652397077647
MLPQCLLK	8	Unmodified	_MLPQCLLK_					0	0	0			REV__ENSG00000250423|ENST00000691062|KIAA1210	REV__ENSG00000250423|ENST00000691062|KIAA1210	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.26666259765625	2	473.266642	944.51873	-0.50656	-0.00023974	0.30893	0.00014621	-0.19763	-9.3533E-05	473.266930209801	36.858	0.23089	36.858	36.751	36.982	0					16	10	2	0	0	0	0.59411	1	13185	13185		50.025	5.9077	1	95704	+		27110	17728	18340	18404	27467	27467					0.044251476757494856
MLPVSPATEQ	10	Unmodified	_MLPVSPATEQ_					0	0	0			REV__ENST00000447332.3_1_1:155030369-155030429:+|nuORF	REV__ENST00000447332.3_1_1:155030369-155030429:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7698974609375	2	536.7708	1071.52705	-1.4045	-0.00075389	-0.63297	-0.00033976	-2.0375	-0.0010937	536.7705490113809	33.289	0.32141	33.289	33.171	33.493	0					14	9	2	0	0	0	0.26198	1	11640	11640		71.877	9.7701	1	408330	+		27111	19286	18341	18405	27468	27468					-0.0058562687393077795
MLRAAREKG	9	Unmodified	_MLRAAREKG_					0	0	0		L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|63|2|sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|63|2|sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|63|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2943725585938	2	516.292568	1030.57058	-0.049653	-2.5635E-05	3.0779	0.0015891	3.0282	0.0015634	516.2942086834818	37.081	0.20757	37.081	37.004	37.212	0					20	11	2	0	0	0	0.30951	1	12533	12533		49.442	11.63	1	88180			27112	11288	18342	18406	27469	27469					0.05652027413862015
MLRAEQND	8	Oxidation (M)	_M(Oxidation (M))LRAEQND_		M(1)LRAEQND		M(46)LRAEQND	0	0	1		ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000366131.6_1_12:6462937-6464599:-|nuORF	ENSG00000111319|ENST00000228916|SCNN1A	ENSG00000111319|ENST00000228916|SCNN1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2269592285156	2	496.726923	991.439294	-0.32454	-0.00016121	0.72389	0.00035958	0.39935	0.00019837	496.72884175867824	31.717	0.54171	31.717	31.518	32.059	0					28	13	4	0	0	0	0.61938	1	11589	11589		45.952	6.6991	1	331330			27113	2661	18343	18407	27470	27470		117			-0.05676827744696311
MLRDRLIN	8	Unmodified	_MLRDRLIN_					0	0	0			REV__tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	REV__tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.291748046875	2	515.794943	1029.57533	1.2298	0.00063431	-2.3011	-0.0011869	-1.0714	-0.00055261	516.2959588924206	34.602	0.67895	34.602	34.143	34.822	0					26	16	3	0	0	0	0.52345	1	12981	12981		57.811	4.4598	1	303050	+		27114	21915	18344	18408	27471	27471					0.061729115566322434
MLRNHASPVM	10	2 Oxidation (M)	_M(Oxidation (M))LRNHASPVM(Oxidation (M))_		M(1)LRNHASPVM(1)		M(60)LRNHASPVM(60)	0	0	2			REV__ENST00000586256.1_1_16:4784633-4796526:+|nuORF	REV__ENST00000586256.1_1_16:4784633-4796526:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.2919921875	2	594.286625	1186.5587	3.1725	0.0018854	4.0985	0.0024357	7.271	0.0043211	594.2900009880699	33.932	0.72932	33.932	33.793	34.522	0					34	15	4	0	0	0	0.36476	1	12965	12965		60.118	19.34	1	812490	+		27115	16100	18345	18409	27472	27472		617;618			-0.027119573916252193
MLSEDPWR	8	Unmodified	_MLSEDPWR_					0	0	0		nc|ENSG00000275410|P35680-3|HNF1B;nc|ENSG00000275410|P35680-2|HNF1B;ENSG00000275410|ENST00000617811|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2434692382812	2	517.242209	1032.46987	3.3179	0.0017161	-0.85382	-0.00044163	2.464	0.0012745	517.2417845706653	23.616	0.76081	23.616	23.301	24.062	0					43	15	4	0	0	0	0.34985	1	7996	7996		76.847	2.5916	1	3364600			27116	8109	18346	18410	27473	27473					-0.04507049359654047
MLSSREGY	8	Oxidation (M)	_M(Oxidation (M))LSSREGY_		M(1)LSSREGY		M(53)LSSREGY	0	0	1			REV__ENST00000413699.5_1_3:23958684-23959420:+|nuORF	REV__ENST00000413699.5_1_3:23958684-23959420:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.71636962890625	2	479.718567	957.422581	-2.9264	-0.0014039	-1.225	-0.00058764	-4.1514	-0.0019915	479.71791204901973	31.663	0.19603	31.663	31.582	31.778	0					10	5	2	0	0	0	0.5676	1	10934	10934		53.351	16.192	1	121490	+		27117	19017	18347	18411	27474	27474		698			-0.05783328630627693
MLSVINHP	8	Unmodified	_MLSVINHP_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.74420166015625	2	455.744388	909.474223	-0.59015	-0.00026896	0.13935	6.351E-05	-0.4508	-0.00020545	455.7445113159591	23.641	0.18154	23.641	23.554	23.736	0					7	4	2	0	0	0	0.59411	1	7865	7865		50.025	0	1	697020	+		27118	16585	18348	18412	27475	27475					0.015864598539224062
MLTEQGKK	8	Unmodified	_MLTEQGKK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7526550292969	2	467.754953	933.495352	-0.72413	-0.00033872	-3.008	-0.001407	-3.7321	-0.0017457	467.75376412625025	30.008	0.35478	30.008	29.803	30.158	0					18	9	3	0	0	0	0.67394	1	10126	10126		37.159	0	1	209200			27119	2774	18349	18413	27476	27476					0.025944251627834092
MLTKVLVAG	9	Unmodified	_MLTKVLVAG_					0	0	0			REV__ENST00000530758.1_1_3:10168359-10168521:+|nuORF	REV__ENST00000530758.1_1_3:10168359-10168521:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2856750488281	2	466.285889	930.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.829	1	41.829	41.329	42.329	0								0	0	0	0.1633	1	16660	16660		56.721	0	1		+		27120	20052	18350	18414	27477	27477					0.08916776581929753
MLTRMNKT	8	Oxidation (M)	_MLTRM(Oxidation (M))NKT_		M(0.011)LTRM(0.989)NKT		M(-19)LTRM(19)NKT	0	0	1			REV__SPNS2|p.T226M|1|0.38|ENSG00000183018|chr17:4530735-4530735|C/T|missense_variant	REV__SPNS2|p.T226M|1|0.38|ENSG00000183018|chr17:4530735-4530735|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7615661621094	2	505.759712	1009.50487	2.9356	0.0014847	0.24249	0.00012264	3.1781	0.0016073	505.7599218851808	37.493	0.83521	37.493	37.187	38.022	0					48	17	4	0	0	0	0.41701	1	14648	14648		68.787	68.787	2	18992000	+		27121	21600	18351	18415	27478	27478		784			0.0004987017665598614
MLTRWRHP	8	Unmodified	_MLTRWRHP_					0	0	0		ENST00000540986.5_1_16:786364-787196:-|nuORF	ENST00000540986.5_1_16:786364-787196:-|nuORF	ENST00000540986.5_1_16:786364-787196:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7955932617188	2	548.795278	1095.576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.851	1	11.851	11.351	12.351	0								0	0	0	1.7419	1	2528	2528		13.775	0.81615	1				27122	10541	18352	18416	27479	27479					0.032037509963402044
MLVEPNSHGPQ	11	Unmodified	_MLVEPNSHGPQ_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.7908325195312	2	604.790055	1207.56556	0.39956	0.00024165	0.95587	0.0005781	1.3554	0.00081975	604.7905828482807	12.463	0.21597	12.463	12.414	12.63	0					8	5	2	0	0	0	0.72154	1	2819	2819		25.574	25.574	1	1053800	+		27123	15637	18353	18417	27480	27480					-0.029923212394123766
MLVGPTPPKG	10	Unmodified	_MLVGPTPPKG_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.7806091308594	2	498.78097	995.547388	-0.23637	-0.0001179	-0.23993	-0.00011967	-0.47629	-0.00023757	498.7807544198059	24.481	0.99255	24.481	24.34	25.333	0					35	23	2	0	0	0	0.5276	1	8296	8296		30.318	0	1	511540	+		27124	17746	18354	18418	27481	27481					0.049435885765319654
MLVGVLVMVG	10	Unmodified	_MLVGVLVMVG_					0	0	0		ENSG00000240053|ENST00000375864|LY6G5B	ENSG00000240053|ENST00000375864|LY6G5B	ENSG00000240053|ENST00000375864|LY6G5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.29461669921875	2	509.295399	1016.57624	0.19151	9.7534E-05	-0.25542	-0.00013008	-0.063912	-3.255E-05	509.295263617668	38.069	0.15149	38.069	38.011	38.162	0					14	8	2	0	0	0	0.50739	1	13620	13620		44.531	0	1	52570			27125	7928	18355	18419	27482	27482					0.06861989881315367
MLVIMLGTTT	10	Unmodified	_MLVIMLGTTT_					0	0	0			REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF	REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2974853515625	2	540.295596	1078.57664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.621	1	29.621	29.121	30.121	0								0	0	0	0.39244	1	10989	10989		32.812	5.7651	1		+		27126	14080	18356	18420	27483	27483					0.04049364810521183
MLVKWLMK	8	Unmodified	_MLVKWLMK_					0	0	0			REV__TCP11L1|p.N11Mfs*30|1|0.48|ENSG00000176148|chr11:33043803-33043803|A/-|frameshift_variant	REV__TCP11L1|p.N11Mfs*30|1|0.48|ENSG00000176148|chr11:33043803-33043803|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8077392578125	2	524.805934	1047.59731	1.6264	0.00085353	-0.84358	-0.00044271	0.78279	0.00041082	524.80535064001	44.806	0.12032	44.806	44.743	44.863	0					9	5	2	0	0	0	0.64096	1	17940	17940		42.474	0.078325	1	66667	+		27127	21629	18357	18421	27484	27484					0.07541999980821856
MLVRAVWR	8	Unmodified	_MLVRAVWR_					0	0	0		ENST00000366730.5_1_1:228327714-228327759:+|nuORF	ENST00000366730.5_1_1:228327714-228327759:+|nuORF	ENST00000366730.5_1_1:228327714-228327759:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8052368164062	2	515.802571	1029.59059	3.2582	0.0016806	4.2926	0.0022141	7.5508	0.0038947	515.8049341862296	41.742	0.14502	41.742	41.703	41.848	0					7	4	2	0	0	0	0.67475	1	16628	16628		37.028	2.8559	1	61522			27128	8898	18358	18422	27485	27485					0.07697823144485483
MLVRCVVRS	9	Oxidation (M)	_M(Oxidation (M))LVRCVVRS_		M(1)LVRCVVRS		M(72)LVRCVVRS	0	0	1		PDCD11|p.S154R|1|0.26|ENSG00000148843|chr10:103405079-103405079|A/C|missense_variant	PDCD11|p.S154R|1|0.26|ENSG00000148843|chr10:103405079-103405079|A/C|missense_variant	PDCD11|p.S154R|1|0.26|ENSG00000148843|chr10:103405079-103405079|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.798583984375	2	539.796629	1077.5787	3.4521	0.0018634	-0.1214	-6.5531E-05	3.3307	0.0017979	539.7966314824711	35.714	0.61395	35.714	35.603	36.217	0					37	12	4	0	0	0	0.13267	1	13801	13801		71.877	71.877	1	7951500			27129	11915	18359	18423	27486	27486		468			0.04301838338960806
MLWTWAIV	8	Unmodified	_MLWTWAIV_					0	0	0		ENST00000592782.5_1_17:43171142-43173565:+|nuORF	ENST00000592782.5_1_17:43171142-43173565:+|nuORF	ENST00000592782.5_1_17:43171142-43173565:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.27215576171875	2	510.272781	1018.53101	-0.11543	-5.8903E-05	0.19875	0.00010142	0.083318	4.2515E-05	510.27202801849006	24.665	0.15033	24.665	24.568	24.719	0					6	4	2	0	0	0	0.75243	1	7317	7317		26.796	2.2921	1	51314			27130	10973	18360	18424	27487	27487					0.02248507410433831
MLYMVIMP	8	Unmodified	_MLYMVIMP_					0	0	0		SLC18A3|p.V54M|1|0.23|ENSG00000187714|chr10:49610900-49610900|G/A|missense_variant	SLC18A3|p.V54M|1|0.23|ENSG00000187714|chr10:49610900-49610900|G/A|missense_variant	SLC18A3|p.V54M|1|0.23|ENSG00000187714|chr10:49610900-49610900|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2508544921875	2	499.249603	996.484653	1.0597	0.00052904	1.3317	0.00066486	2.3914	0.0011939	499.25033113896325	39.071	0.28866	39.071	38.967	39.256	0					11	6	3	0	0	0	0.68754	1	15423	15423		33.493	0	1	332720			27131	22402	18361	18425	27488	27488					-0.013730168075085203
MMAPICLVEN	10	Unmodified	_MMAPICLVEN_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7623901367188	2	560.763606	1119.51266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.2	1	45.2	44.7	45.7	0								0	0	0	0.40063	1	18105	18105		30.318	2.4355	1				27132	5484	18362	18426	27489	27489					-0.04231738618068448
MMARICLNK	9	Unmodified	_MMARICLNK_					0	0	0		ENST00000512078.5_1_5:59893582-59984814:-|nuORF;nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	ENST00000512078.5_1_5:59893582-59984814:-|nuORF	ENST00000512078.5_1_5:59893582-59984814:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2828979492188	2	540.279757	1078.54496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.275	1	42.275	41.775	42.775	0								0	0	0	0.17378	1	16024	16024		38.806	0	1				27133	1167	18363	18427	27490	27490					0.008830935755668179
MMARLLRTSF	10	Unmodified	_MMARLLRTSF_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	613.3324584960938	2	613.330836	1224.64712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.654	1	48.654	48.154	49.154	0								0	0	0	0.41767	1	19317	19317		9.1829	0	1				27134	4213	18364	18428	27491	27491					0.0437808291883357
MMEVLKKCN	9	Unmodified	_MMEVLKKCN_					0	0	0			REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2708129882812	2	548.271598	1094.52864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.081	1	30.081	29.581	30.581	0								0	0	0	0.2591	1	10200	10200		42.396	4.5846	1		+		27135	21556	18365	18429	27492	27492					-0.01484032381176803
MMGQLHCVC	9	Unmodified	_MMGQLHCVC_					0	0	0			REV__ENST00000504194.5_1_4:3387770-3387881:+|nuORF	REV__ENST00000504194.5_1_4:3387770-3387881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2096862792969	2	511.207943	1020.40133	3.0855	0.0015773	-0.092226	-4.7147E-05	2.9932	0.0015302	511.2080838885846	40.743	0.41599	40.743	40.687	41.103	0					17	7	4	0	0	0	0.49003	1	16208	16208		33.516	6.7195	1	418260	+		27136	19826	18366	18430	27493	27493					-0.10805076527026358
MMHEEHLRQ	9	Unmodified	_MMHEEHLRQ_					0	0	0		nc|ENSG00000159625|Q8IY82-2|DRC7;ENSG00000159625|ENST00000360716|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.778076171875	2	605.776425	1209.5383	1.6779	0.0010165	0.74309	0.00045015	2.421	0.0014666	605.7768453839094	23.321	0.26678	23.321	23.263	23.529	0					10	5	3	0	0	0	0.37197	1	8030	8030		44.117	2.6902	1	472710			27137	5324	18367	18431	27494	27494					-0.05809128051441803
MMHRVWLE	8	Unmodified	_MMHRVWLE_					0	0	0		ENST00000280979.8_2_14:33293035-33293080:+|nuORF	ENST00000280979.8_2_14:33293035-33293080:+|nuORF	ENST00000280979.8_2_14:33293035-33293080:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2718505859375	2	551.270247	1100.52594	1.8286	0.001008	1.0504	0.00057905	2.879	0.0015871	551.270789195622	25.294	0.31366	25.294	25.195	25.509	0					16	7	3	0	0	0	0.57802	1	8635	8635		52.299	52.299	1	1457600			27138	8410	18368	18432	27495	27495					-0.020301197238040913
MMHVPGKVF	9	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))HVPGKVF_		M(1)M(1)HVPGKVF		M(60)M(60)HVPGKVF	0	0	2			REV__ENST00000426620.5_1_3:38234779-38271948:+|nuORF	REV__ENST00000426620.5_1_3:38234779-38271948:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7666015625	2	539.26463	1076.51471	-1.4765	-0.00079621	-0.51221	-0.00027622	-1.9887	-0.0010724	539.2651754575143	39.236	0.10299	39.236	39.192	39.295	0					7	5	2	0	0	0	0.21116	1	13998	13998		60.294	19.721	1	59281	+		27139	19117	18369	18433	27496	27496		701;702			-0.02048941817929517
MMKEILVRM	9	2 Oxidation (M)	_M(Oxidation (M))MKEILVRM(Oxidation (M))_		M(0.5)M(0.5)KEILVRM(1)		M(0)M(0)KEILVRM(49)	0	0	2			REV__ENST00000468887.1_1_1:205739472-205744529:-|nuORF	REV__ENST00000468887.1_1_1:205739472-205744529:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.8106079101562	2	591.805805	1181.59706	3.1785	0.0018811	2.6114	0.0015455	5.7899	0.0034265	591.8063635789595	39.855	0.4992	39.855	39.718	40.217	0					27	11	4	0	0	0	0.13267	1	15792	15792		71.877	6.0743	3	1455800	+		27140	14187	18370	18434	27497	27497		539;540;541			0.013522121986852653
MMKKRGVVY	9	Oxidation (M)	_M(Oxidation (M))MKKRGVVY_		M(0.979)M(0.021)KKRGVVY		M(17)M(-17)KKRGVVY	0	0	1			REV__nc|ENSG00000004948|P30988-5|CALCR	REV__nc|ENSG00000004948|P30988-5|CALCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.3084106445312	2	564.306829	1126.59911	3.4706	0.0019585	-3.3357	-0.0018823	0.13489	7.612E-05	564.3044383862795	40.088	0.62537	40.088	39.813	40.439	0					31	14	3	0	0	0	0.25109	1	15897	15897		55.504	18.345	2	435150	+		27141	12832	18371	18435	27498	27498		493			0.04087008998794772
MMLKREKA	8	Unmodified	_MMLKREKA_					0	0	0			REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000198838|Q15413-3|RYR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7818298339844	2	503.780447	1005.54634	2.9293	0.0014757	-1.9585	-0.00098668	0.97078	0.00048906	503.78022561413155	43.116	0.25278	43.116	43.011	43.263	0					10	7	2	0	0	0	0.63077	1	17248	17248		44.117	10.601	1	54254	+		27142	17439	18372	18436	27499	27499					0.043790509359837415
MMLRHNRNHDM	11	Unmodified	_MMLRHNRNHDM_					0	0	0			REV__AKAP8L|p.R511H|1|0.26|ENSG00000011243|chr19:15397154-15397154|C/T|missense_variant	REV__AKAP8L|p.R511H|1|0.26|ENSG00000011243|chr19:15397154-15397154|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.5578918457031	3	485.556919	1453.64893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.234	1	15.234	14.734	15.734	0								0	0	0	0.45674	1	3891	3891		20.03	5.9445	1		+		27143	12130	18373	18437	27500	27500					-0.05975231334878117
MMMIALSK	8	Unmodified	_MMMIALSK_					0	0	0			REV__PES1|p.R534S|1|0.21|ENSG00000100029|chr22:30578920-30578920|G/T|missense_variant	REV__PES1|p.R534S|1|0.21|ENSG00000100029|chr22:30578920-30578920|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7393798828125	2	462.739402	923.464252	0.67815	0.00031381	-0.92809	-0.00042946	-0.24994	-0.00011566	462.7392540159475	24.828	0.21179	24.828	24.741	24.952	0					10	5	3	0	0	0	0.44433	1	8422	8422		65.803	4.8312	1	559480	+		27144	21359	18374	18438	27501	27501					-0.000541874673217535
MMMLQNILQ	9	Oxidation (M)	_MMM(Oxidation (M))LQNILQ_		M(0.001)M(0.005)M(0.994)LQNILQ		M(-29)M(-23)M(23)LQNILQ	0	0	1		nc|ENSG00000173226|Q15051-3|IQCB1;nc|ENSG00000173226|Q15051-2|IQCB1;ENSG00000173226|ENST00000310864|IQCB1	nc|ENSG00000173226|Q15051-3|IQCB1	nc|ENSG00000173226|Q15051-3|IQCB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.8523864746094	3	379.853679	1136.53921	-1.1188	-0.00042498	-2.2921	-0.00087065	-3.4109	-0.0012956	379.8529271577314	26.294	0.20597	26.294	26.21	26.416	0					14	6	3	0	0	0	0.33044	1	8231	8231		47.657	6.8792	3	298610			27145	6415	18375	18439	27502	27502		265			-0.023600497267352694
MMPAFGIHP	9	Unmodified	_MMPAFGIHP_					0	0	0		ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7402648925781	2	500.740791	999.467029	-2.1258	-0.0010645	0.96019	0.00048081	-1.1656	-0.00058368	500.7412456362287	30.58	0.29926	30.58	30.494	30.793	0					17	8	3	0	0	0	0.43174	1	10435	10435		39.021	39.021	1	594730			27146	6927	18376	18440	27503	27503					-0.032725960181437586
MMPKLIAK	8	Unmodified	_MMPKLIAK_					0	0	0			REV__CHD7|p.Q1179K|1|0.1|ENSG00000171316|chr8:60830334-60830334|C/A|missense_variant	REV__CHD7|p.Q1179K|1|0.1|ENSG00000171316|chr8:60830334-60830334|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.27642822265625	2	466.277009	930.539466	-2.2579	-0.0010528	0.77975	0.00036358	-1.4782	-0.00068925	466.2773547311939	32.072	0.29026	32.072	31.948	32.239	0					20	8	4	0	0	0	0.5676	1	11102	11102		53.351	5.4358	1	720650	+		27147	12457	18377	18441	27504	27504					0.07141738055429414
MMQILTKLC	9	Carbamidomethyl (C)	_MMQILTKLC(Carbamidomethyl (C))_	MMQILTKLC(1)		MMQILTKLC(74)		0	1	0			REV__ENST00000420695.1_1_1:153506119-153506353:+|nuORF	REV__ENST00000420695.1_1_1:153506119-153506353:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.2946166992188	2	569.295073	1136.57559	-1.3222	-0.0007527	-0.72623	-0.00041344	-2.0484	-0.0011661	569.2946847633307	21.018	0.21652	21.018	20.936	21.152	0					12	5	3	0	0	0	0.12239	1	6008	6008		74.255	12.148	1	726500	+		27148	19072	18378	18442	27505	27505	683				0.01276827169954231
MMRMMTKIN	9	2 Oxidation (M)	_MMRM(Oxidation (M))M(Oxidation (M))TKIN_		M(0.003)M(0.003)RM(0.997)M(0.997)TKIN		M(-30)M(-30)RM(30)M(30)TKIN	0	0	2		ENST00000369577.7_1_6:87965292-87965355:+|nuORF	ENST00000369577.7_1_6:87965292-87965355:+|nuORF	ENST00000369577.7_1_6:87965292-87965355:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.2754516601562	2	594.273815	1186.53308	0.13048	7.7541E-05	3.1661	0.0018815	3.2966	0.0019591	594.2757511515242	29.911	0.14445	29.911	29.836	29.98	0					10	5	3	0	0	0	0.26904	1	9482	9482		53.351	10.487	6	89311			27149	8945	18379	18443	27506	27506		354;355			-0.052728912299016883
MMRMTMSIP	9	Oxidation (M)	_M(Oxidation (M))MRMTMSIP_		M(0.939)M(0.048)RM(0.012)TM(0.001)SIP		M(13)M(-13)RM(-19)TM(-30)SIP	0	0	1		ENST00000481928.1_1_2:232577176-232577583:+|nuORF	ENST00000481928.1_1_2:232577176-232577583:+|nuORF	ENST00000481928.1_1_2:232577176-232577583:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2479858398438	2	557.249808	1112.48506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.034	1	17.034	16.534	17.534	0								0	0	0	0.27025	1	4190	4190		40.778	6.8565	4				27150	9963	18380	18444	27507	27507		401			-0.0666796514994985
MMWSMHVAK	9	Unmodified	_MMWSMHVAK_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7590942382812	2	560.758658	1119.50276	-0.8879	-0.0004979	0.99659	0.00055885	0.10868	6.0946E-05	560.7591725726238	30.94	1.0193	30.94	30.821	31.84	0					63	27	4	0	0	0	0.14603	1	10564	10564		68.787	6.6794	1	1183100			27151	6942	18381	18445	27508	27508					-0.05220881832815394
MNDVLENELQC	11	Unmodified	_MNDVLENELQC_					0	0	0		nc|ENSG00000112130|O76064-3|RNF8;ENST00000229866.10_1_6:37328318-37358531:+|nuORF;ENSG00000112130|ENST00000373479|RNF8	nc|ENSG00000112130|O76064-3|RNF8	nc|ENSG00000112130|O76064-3|RNF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	654.2833862304688	2	654.283945	1306.55334	-0.85833	-0.00056159	-0.3383	-0.00022134	-1.1966	-0.00078293	654.2839343590578	39.356	0.33356	39.356	39.237	39.571	0					29	11	4	0	0	0	0.74306	1	15465	15465		23.523	0.94304	1	553300			27152	2716	18382	18446	27509	27509					-0.08767725764755596
MNESHPRK	8	Unmodified	_MNESHPRK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7456970214844	2	499.74545	997.476348	-0.64157	-0.00032062	0.89059	0.00044507	0.24902	0.00012444	499.74612490959476	12.584	0.37588	12.584	12.254	12.63	0					10	9	2	0	0	0	0.28444	1	2875	2875		87.754	13.78	1	970590			27153	1011	18383	18447	27510	27510					-0.022491114082640706
MNLDKQTT	8	Unmodified	_MNLDKQTT_					0	0	0		ENSG00000205693|ENST00000381273|MANSC4	ENSG00000205693|ENST00000381273|MANSC4	ENSG00000205693|ENST00000381273|MANSC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7343444824219	2	475.734217	949.453881	-0.45414	-0.00021605	0.39232	0.00018664	-0.06182	-2.941E-05	475.73434541042025	21.299	0.16573	21.299	21.192	21.357	0					5	3	2	0	0	0	0.77246	1	7055	7055		24.203	1.1603	1	160890			27154	7756	18384	18448	27511	27511					-0.02286755596560397
MNLIKMIV	8	Unmodified	_MNLIKMIV_					0	0	0		ENST00000507640.1_1_5:61778930-61779155:+|nuORF;IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENST00000507640.1_1_5:61778930-61779155:+|nuORF	ENST00000507640.1_1_5:61778930-61779155:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2821350097656	2	481.282292	960.55003	-0.63112	-0.00030375	-0.99819	-0.00048041	-1.6293	-0.00078416	481.28188281373264	35.124	0.26442	35.124	35.032	35.296	0					8	5	2	0	0	0	0.7126	1	13550	13550		31.955	0	1	63115			27155	1745	18385	18449	27512	27512					0.06817720709852892
MNLKKEATL	9	Unmodified	_MNLKKEATL_					0	0	0		nc|ENSG00000154655|Q8NA19-2|L3MBTL4;L3MBTL4|p.R516Gfs*63|1|0.34|ENSG00000154655|chr18:5969489-5969489|A/-|frameshift_variant;ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2962036132812	2	524.296985	1046.57942	-1.2668	-0.00066417	-1.4283	-0.00074887	-2.6951	-0.001413	524.2959409761321	32.273	0.1656	32.273	32.188	32.354	0					6	4	2	0	0	0	0.57706	1	11216	11216		24.203	0	1	75550			27156	5096	18386	18450	27513	27513					0.05798956259673105
MNMKLALIR	9	Oxidation (M)	_M(Oxidation (M))NMKLALIR_		M(0.978)NM(0.022)KLALIR		M(16)NM(-16)KLALIR	0	0	1		ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160868|ENST00000651514|CYP3A4	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3171997070312	2	553.314654	1104.61476	3.6363	0.002012	0.63476	0.00035122	4.271	0.0023632	553.3149172479206	40.312	0.40491	40.312	40.034	40.439	0					21	9	3	0	0	0	0.22377	1	15975	15975		58.782	58.782	2	279830			27157	2426	18387	18451	27514	27514		104			0.0666329551581839
MNQNLDIY	8	Unmodified	_MNQNLDIY_					0	0	0		ENST00000482824.1_1_3:15676934-15683645:+|nuORF;ENSG00000169814|ENST00000643237|BTD;nc|ENSG00000169814|P43251|BTD;nc|ENSG00000169814|P43251-3|BTD;nc|ENSG00000169814|P43251-2|BTD	ENST00000482824.1_1_3:15676934-15683645:+|nuORF	ENST00000482824.1_1_3:15676934-15683645:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.73431396484375	2	505.734217	1009.45388	-0.39268	-0.00019859	-0.29179	-0.00014757	-0.68448	-0.00034616	505.73437492540825	33.921	0.78289	33.921	33.785	34.568	0					34	19	4	0	0	0	0.54629	1	13004	13004		55.504	7.5886	1	381700			27158	6186	18388	18452	27515	27515					-0.05046755596549701
MNTIVFNK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MNTIVFNK_					1	0	0		MKX|p.G11S|1|0.59|ENSG00000150051|chr10:27743385-27743385|C/T|missense_variant;ENSG00000150051|ENST00000419761|MKX	MKX|p.G11S|1|0.59|ENSG00000150051|chr10:27743385-27743385|C/T|missense_variant	MKX|p.G11S|1|0.59|ENSG00000150051|chr10:27743385-27743385|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7625427246094	2	504.762778	1007.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.302	1	39.302	38.802	39.802	0								0	0	0	1.7419	1	15453	15453		63.306	7.8021	1				27159	4917	18389	18453	27516	27516					0.007547116798264142
MNWVLAVG	8	Unmodified	_MNWVLAVG_					0	0	0			REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF	REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2339172363281	2	445.233656	888.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.52	1	21.52	21.02	22.02	0								0	0	0	1.7419	1	6851	6851		28.254	1.5614	1		+		27160	13261	18390	18454	27517	27517					0.004070748252161138
MPAAQEGAVAF	11	Unmodified	_MPAAQEGAVAF_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.2644653320312	2	546.263142	1090.51173	1.8055	0.00098626	0.12074	6.5958E-05	1.9262	0.0010522	546.2632112829073	41.961	0.3728	41.961	41.824	42.197	0					27	18	2	0	0	0	0.53842	1	15907	15907		41.427	7.2541	1	106690			27161	7894	18391	18455	27518	27518					-0.02990493671131844
MPAAQEGAVAF	11	Unmodified	_MPAAQEGAVAF_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.765625	2	546.263142	1090.51173	4.7375	0.0025879	-2.433	-0.001329	2.3045	0.0012589	546.7633918100946	41.77	0.3042	41.77	41.599	41.903	0					28	18	2	0	0	0	0.55715	1	13825	13825		40.058	8.5284	1	67166			27162	7894	18391	18455	27519	27519					-0.02990493671131844
MPAAQEGAVAF	11	Unmodified	_MPAAQEGAVAF_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2649536132812	2	546.263142	1090.51173	0.84154	0.0004597	0.86761	0.00047394	1.7091	0.00093364	546.2636085056414	41.924	0.46108	41.924	41.789	42.25	0					49	21	3	0	0	0	0.29191	1	16449	16449		63.534	2.5619	1	453100			27163	7894	18391	18455	27520	27520					-0.02990493671131844
MPAAQEGAVAF	11	Unmodified	_MPAAQEGAVAF_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2634887695312	2	546.263142	1090.51173	1.9798	0.0010815	-0.48191	-0.00026325	1.4979	0.00081826	546.262979510511	41.675	0.30606	41.675	41.569	41.875	0					30	18	2	0	0	0	0.64626	1	14657	14657		32.751	2.2469	1	81858			27164	7894	18391	18455	27521	27521					-0.02990493671131844
MPAAQEGAVAF	11	Unmodified	_MPAAQEGAVAF_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2642211914062	2	546.263142	1090.51173	0.55182	0.00030144	-0.058535	-3.1976E-05	0.49328	0.00026946	546.2632766180914	41.868	0.55722	41.868	41.728	42.285	0					51	15	4	0	0	0	0.21174	2	16654	16654;16814		72.879	8.7765	1	1240200			27165	7894	18391	18455	27522;27523	27522					-0.02990493671131844
MPADTNKAF	9	Unmodified	_MPADTNKAF_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7373962402344	2	497.73676	993.458967	1.5281	0.00076058	-1.1288	-0.00056183	0.39932	0.00019876	497.7363180229256	26.784	0.33264	26.784	26.668	27.001	0					20	11	2	0	0	0	0.048471	1	8169	8169		95.815	40.311	1	91760			27166	3402	18392	18456	27524	27524					-0.038024517339295016
MPADTNKAF	9	Unmodified	_MPADTNKAF_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7367248535156	2	497.73676	993.458967	0.18547	9.2317E-05	-0.23414	-0.00011654	-0.048664	-2.4222E-05	497.73670754798417	26.792	0.60387	26.792	26.557	27.161	0					29	20	2	0	0	0	0.24334	1	8166	8166		56.434	15.861	1	126920			27167	3402	18392	18456	27525	27525					-0.038024517339295016
MPADTNKAF	9	Unmodified	_MPADTNKAF_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7367858886719	2	497.73676	993.458967	0.56075	0.00027911	-0.8253	-0.00041078	-0.26455	-0.00013168	497.7363653815117	27.025	0.71354	27.025	26.897	27.61	0					40	17	3	0	0	0	0.10915	1	9367	9367		77.318	36.745	1	441580			27168	3402	18392	18456	27526	27526					-0.038024517339295016
MPADTNKAF	9	Unmodified	_MPADTNKAF_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7367248535156	2	497.73676	993.458967	0.69966	0.00034825	-0.98187	-0.00048871	-0.28221	-0.00014047	497.7363084089059	27.035	0.87603	27.035	26.76	27.636	0					50	21	4	0	0	0	0.18416	1	9382	9382		63.534	35.652	1	942220			27169	3402	18392	18456	27527	27527					-0.038024517339295016
MPADTNKAF	9	Unmodified	_MPADTNKAF_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.73675537109375	2	497.73676	993.458967	-0.025695	-1.2789E-05	-0.44675	-0.00022236	-0.47244	-0.00023515	497.7367225002329	27.034	0.75488	27.034	26.879	27.634	0					46	15	5	0	0	0	0.063171	2	9734	9734;9928		90.601	40.576	1	1330000			27170	3402	18392	18456	27528;27529	27528					-0.038024517339295016
MPADTNKAF	9	Unmodified	_MPADTNKAF_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.73638916015625	2	497.73676	993.458967	-0.17575	-8.7475E-05	0.4345	0.00021627	0.25876	0.00012879	497.7370655273795	26.865	0.53181	26.865	26.704	27.235	0					27	13	3	0	0	0	0.10915	1	8690	8690		77.318	23.966	1	154540			27171	3402	18392	18456	27530	27530					-0.038024517339295016
MPADTNKAF	9	Unmodified	_MPADTNKAF_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.73663330078125	2	497.73676	993.458967	-0.71827	-0.00035751	0.39517	0.00019669	-0.32309	-0.00016082	497.73708762498353	26.987	0.82113	26.987	26.756	27.577	0					46	16	4	0	0	0	0.037924	2	9580	9580;9750		101.25	53.337	1	1729600			27172	3402	18392	18456	27531;27532	27531					-0.038024517339295016
MPAEIVELH	9	Unmodified	_MPAEIVELH_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7689819335938	2	519.76806	1037.52157	0.31115	0.00016173	1.9132	0.00099441	2.2243	0.0011561	519.7686787700555	38.351	0.15439	38.351	38.267	38.421	0					6	3	2	0	0	0	0.1236	1	15072	15072		73.975	5.1879	1	37151			27173	2065	18393	18457	27533	27533					0.004306943342726299
MPAETIKEL	9	Unmodified	_MPAETIKEL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2757568359375	2	516.275718	1030.53688	0.18729	9.6694E-05	0.47934	0.00024747	0.66663	0.00034417	516.2760135952375	35.137	0.36669	35.137	35.032	35.398	0					15	7	3	0	0	0	0.017421	1	13525	13525		126.24	46.53	1	380260			27174	3290	18394	18458	27534	27534					0.022835611314576454
MPAETIKEL	9	Unmodified	_MPAETIKEL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.276123046875	2	516.275718	1030.53688	1.5253	0.00078746	-1.5482	-0.0007993	-0.022926	-1.1836E-05	516.2750253203418	35.125	0.26379	35.125	35.015	35.279	0					13	5	3	0	0	0	0.063171	1	13543	13543		90.601	13.827	1	534090			27175	3290	18394	18458	27535	27535					0.022835611314576454
MPAKATIF	8	Unmodified	_MPAKATIF_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;EIF2A|p.Y349Hfs*7|1|0.06|ENSG00000144895|chr3:150572190-150572191|-/CATA|frameshift_variant	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.742919921875	2	439.743857	877.47316	-0.35392	-0.00015563	-0.26437	-0.00011626	-0.61829	-0.00027189	439.74360210297675	34.712	0.28828	34.712	34.624	34.912	0					11	8	2	0	0	0	0.63077	1	13391	13391		44.117	6.9577	1	48459			27176	896	18395	18459	27536	27536					0.02952245485016647
MPAKKPKR	8	Unmodified	_MPAKKPKR_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2970275878906	2	478.297122	954.579691	-0.28151	-0.00013465	1.2324	0.00058944	0.95085	0.00045479	478.2981454727258	39.866	0.24812	39.866	39.738	39.986	0					18	9	3	0	0	0	0.68754	1	15172	15172		35.201	6.9464	1	197170			27177	998	18396	18460	27537	27537					0.10058420770201337
MPAKKPKR	8	Unmodified	_MPAKKPKR_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2961120605469	2	478.297122	954.579691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.608	1	39.608	39.108	40.108	0								0	0	0	1.7419	1	14111	14111		62.978	2.8602	1				27178	998	18396	18460	27538	27538					0.10058420770201337
MPARTLAW	8	Unmodified	_MPARTLAW_					0	0	0		ENST00000540626.5_1_11:71714289-71714445:-|nuORF	ENST00000540626.5_1_11:71714289-71714445:-|nuORF	ENST00000540626.5_1_11:71714289-71714445:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2535095214844	2	473.25238	944.490207	-0.31875	-0.00015085	2.2082	0.001045	1.8894	0.00089417	473.25341283893823	22.185	0.23813	22.185	22.012	22.25	0					10	7	2	0	0	0	0.75243	1	6216	6216		26.796	0.10319	1	51831			27179	10536	18397	18461	27539	27539					0.01574166090813378
MPAVKAIIY	9	Unmodified	_MPAVKAIIY_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.29388427734375	2	503.293714	1004.57287	-0.45002	-0.00022649	0.63594	0.00032007	0.18592	9.3573E-05	503.29419538921144	40.771	0.35922	40.771	40.55	40.909	0					15	6	3	0	0	0	0.32741	1	16142	16142		47.916	47.916	1	171980			27180	1623	18398	18462	27540	27540					0.07077063098972758
MPDEATPHY	9	Unmodified	_MPDEATPHY_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1;MAN2A1|p.W332Gfs*17|1|0.18|ENSG00000112893|chr5:109767687-109767687|T/-|frameshift_variant;MAN2A1|p.D469*|1|0.33|ENSG00000112893|chr5:109781418-109781419|-/T|frameshift_variant;MAN2A1|p.F468Lfs*22|1|0.43|ENSG00000112893|chr5:109781419-109781419|T/-|frameshift_variant;MAN2A1|p.F842Lfs*16|1|0.14|ENSG00000112893|chr5:109823792-109823792|T/-|frameshift_variant	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7257690429688	2	530.723849	1059.43315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.691	1	28.691	28.191	29.191	0								0	0	0	0.1836	1	10168	10168		53.351	21.397	1				27181	2767	18399	18463	27541	27541					-0.09419345976220939
MPDEATPHY	9	Unmodified	_MPDEATPHY_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1;MAN2A1|p.W332Gfs*17|1|0.18|ENSG00000112893|chr5:109767687-109767687|T/-|frameshift_variant;MAN2A1|p.D469*|1|0.33|ENSG00000112893|chr5:109781418-109781419|-/T|frameshift_variant;MAN2A1|p.F468Lfs*22|1|0.43|ENSG00000112893|chr5:109781419-109781419|T/-|frameshift_variant;MAN2A1|p.F842Lfs*16|1|0.14|ENSG00000112893|chr5:109823792-109823792|T/-|frameshift_variant	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7238159179688	2	530.723849	1059.43315	0.96171	0.0005104	-0.096574	-5.1254E-05	0.86513	0.00045915	530.7240337278791	28.714	0.5549	28.714	28.482	29.037	0					18	11	3	0	0	0	0.13519	1	10528	10528		71.296	37.123	1	89411			27182	2767	18399	18463	27542	27542					-0.09419345976220939
MPDGGHCR	8	Unmodified	_MPDGGHCR_					0	0	0		ENST00000590135.5_1_19:36235145-36235544:-|nuORF	ENST00000590135.5_1_19:36235145-36235544:-|nuORF	ENST00000590135.5_1_19:36235145-36235544:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.6794128417969	2	436.678722	871.342891	0.75423	0.00032935	0.66374	0.00028984	1.418	0.00061919	436.6790868698476	49.898	0.46371	49.898	49.704	50.168	0					52	19	4	0	0	0	0.7887	1	18721	18721		12.959	12.959	1	2056700			27183	10946	18400	18464	27543	27543					-0.09792673785636907
MPDHTDVSL	9	Unmodified	_MPDHTDVSL_					0	0	0		STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7314758300781	2	507.731674	1013.4488	1.3012	0.00066064	-1.3118	-0.00066602	-0.010612	-5.3882E-06	507.73097179999587	32.623	0.61715	32.623	32.355	32.972	0					37	12	4	0	0	0	0.2873	1	12301	12301		51.335	8.9393	1	1095200			27184	4231	18401	18465	27544	27544					-0.057390594591765876
MPDLAHVM	8	Unmodified	_MPDLAHVM_					0	0	0		ENST00000488866.1_1_2:44445059-44445709:+|nuORF;nc|ENSG00000138032|O75688-3|PPM1B;nc|ENSG00000138032|O75688-4|PPM1B;nc|ENSG00000138032|O75688-2|PPM1B;ENSG00000138032|ENST00000282412|PPM1B;PPM1B|p.N346Ifs*25|1|0.12|ENSG00000138032|chr2:44218036-44218036|A/-|frameshift_variant	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.216796875	2	457.217149	912.419744	0.7649	0.00034972	-0.039997	-1.8288E-05	0.7249	0.00033144	457.21706201209946	42.733	0.31061	42.733	42.575	42.886	0					18	15	2	0	0	0	0.57802	1	16145	16145		52.299	15.14	1	135480			27185	4217	18402	18466	27545	27545					-0.039968752891468284
MPDLAHVM	8	Unmodified	_MPDLAHVM_					0	0	0		ENST00000488866.1_1_2:44445059-44445709:+|nuORF;nc|ENSG00000138032|O75688-3|PPM1B;nc|ENSG00000138032|O75688-4|PPM1B;nc|ENSG00000138032|O75688-2|PPM1B;ENSG00000138032|ENST00000282412|PPM1B;PPM1B|p.N346Ifs*25|1|0.12|ENSG00000138032|chr2:44218036-44218036|A/-|frameshift_variant	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2167053222656	2	457.217149	912.419744	-0.43445	-0.00019864	0.41324	0.00018894	-0.021211	-9.6979E-06	457.2173417879744	42.692	0.56523	42.692	42.268	42.834	0					22	15	2	0	0	0	0.39542	1	16985	16985		71.378	13.567	1	134850			27186	4217	18402	18466	27546	27546					-0.039968752891468284
MPDVVVRSF	9	Unmodified	_MPDVVVRSF_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2766723632812	2	525.276052	1048.53755	0.55884	0.00029354	0.6826	0.00035856	1.2414	0.0006521	525.276627832184	41.334	0.27291	41.334	41.115	41.387	0					9	6	2	0	0	0	0.43488	1	16406	16406		38.754	1.5945	1	107560			27187	5371	18403	18467	27547	27547					0.015224005711615973
MPEASGPKF	9	Unmodified	_MPEASGPKF_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant;KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2335205078125	2	482.233853	962.453153	0.5615	0.00027078	-1.1969	-0.00057717	-0.63536	-0.00030639	482.2334103661578	30.526	0.45234	30.526	30.127	30.579	0					19	11	3	0	0	0	0.085655	1	11010	11010		82.75	14.266	1	386250			27188	7423	18404	18468	27548	27548					-0.029575502455941205
MPEASGPKF	9	Unmodified	_MPEASGPKF_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant;KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2338562011719	2	482.233853	962.453153	-0.10303	-4.9687E-05	0.71874	0.0003466	0.6157	0.00029691	482.23449281988775	30.521	0.64917	30.521	30.059	30.708	0					29	14	3	0	0	0	0.085655	1	11406	11406		82.75	39.886	1	346410			27189	7423	18404	18468	27549	27549					-0.029575502455941205
MPEASGPKF	9	Unmodified	_MPEASGPKF_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant;KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2335510253906	2	482.233853	962.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.338	1	30.338	29.838	30.838	0								0	0	0	0.23445	1	10318	10318		45.972	3.4978	1				27190	7423	18404	18468	27550	27550					-0.029575502455941205
MPEDVKNFY	9	Unmodified	_MPEDVKNFY_					0	0	0		ENST00000587511.1_1_18:34387792-34408730:-|nuORF;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENST00000587511.1_1_18:34387792-34408730:-|nuORF	ENST00000587511.1_1_18:34387792-34408730:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7627563476562	2	571.762975	1141.5114	0.15796	9.0313E-05	0.26855	0.00015355	0.4265	0.00024386	571.7629849375203	38.135	0.34358	38.135	38.039	38.382	0					11	7	2	0	0	0	0.28897	1	14959	14959		51.193	8.7966	1	104630			27191	3941	18405	18469	27551	27551					-0.053699133909731245
MPEGSHVYE	9	Unmodified	_MPEGSHVYE_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7247314453125	2	524.723849	1047.43315	2.0435	0.0010723	-0.51891	-0.00027229	1.5246	0.0008	524.7235865255868	32.428	0.70611	32.428	31.949	32.656	0					29	17	2	0	0	0	0.43426	1	11957	11957		38.806	1.647	1	93060	+		27192	16293	18406	18470	27552	27552					-0.08867345976227625
MPEGSHVYE	9	Unmodified	_MPEGSHVYE_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.724365234375	2	524.723849	1047.43315	0.53955	0.00028312	0.2226	0.0001168	0.76215	0.00039992	524.7240821719711	32.46	1.2218	32.46	31.471	32.693	0					49	24	3	0	0	0	0.48389	1	12143	12143		34.173	8.5985	1	430140	+		27193	16293	18406	18470	27553	27553					-0.08867345976227625
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2680053710938	2	515.267893	1028.52123	1.1908	0.0006136	-0.6591	-0.00033961	0.53175	0.00027399	515.2674163650425	31.213	0.95886	31.213	30.835	31.794	0					35	23	2	0	0	0	0.085655	1	11274	11274		82.75	16.321	1	855770			27194	5120	18407	18471	27554	27554					0.00811274614420654
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.26806640625	2	515.267893	1028.52123	0.78181	0.00040284	-0.48623	-0.00025054	0.29557	0.0001523	515.2676811775981	31.136	0.64113	31.136	30.997	31.638	0					32	14	3	0	0	0	0.24334	1	11705	11705		56.434	6.9922	1	365310			27195	5120	18407	18471	27555	27555					0.00811274614420654
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2689208984375	2	515.267893	1028.52123	1.0836	0.00055834	-0.020117	-1.0366E-05	1.0635	0.00054798	515.2678035099856	30.966	0.51233	30.966	30.775	31.287	0					22	14	2	0	0	0	0.22837	1	10578	10578		58.23	1.5089	1	93521			27196	5120	18407	18471	27556	27556					0.00811274614420654
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.267822265625	2	515.267893	1028.52123	0.15581	8.0286E-05	0.21048	0.00010845	0.36629	0.00018874	515.2680067047866	31.167	0.90325	31.167	30.831	31.735	0					45	18	4	0	0	0	0.070005	1	11569	11569		88.177	19.39	1	932070			27197	5120	18407	18471	27557	27557					0.00811274614420654
MPELTINAP	9	Unmodified	_MPELTINAP_					0	0	0			REV__ENST00000469423.1_1_19:12757436-12758173:-|nuORF	REV__ENST00000469423.1_1_19:12757436-12758173:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2521667480469	2	493.254785	984.495018	-1.2673	-0.00062508	-2.8114	-0.0013867	-4.0786	-0.0020118	493.2533481705574	33.137	0.23272	33.137	33.035	33.267	0					16	10	2	0	0	0	0.33044	1	11091	11091		47.657	8.4045	1	100340	+		27198	13735	18408	18472	27558	27558					0.002150054429080228
MPEPDAQRF	9	Unmodified	_MPEPDAQRF_					0	0	0		nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1;CHEK1|p.I234Nfs*11|1|0.24|ENSG00000149554|chr11:125635508-125635509|-/A|frameshift_variant	nc|ENSG00000149554|O14757-2|CHEK1	nc|ENSG00000149554|O14757-2|CHEK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.754150390625	2	545.752941	1089.49133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.581	1	31.581	31.081	32.081	0								0	0	0	0.2591	1	10160	10160		42.396	13.247	1				27199	4894	18409	18473	27559	27559					-0.04983664330939064
MPEPDAQRF	9	Unmodified	_MPEPDAQRF_					0	0	0		nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1;CHEK1|p.I234Nfs*11|1|0.24|ENSG00000149554|chr11:125635508-125635509|-/A|frameshift_variant	nc|ENSG00000149554|O14757-2|CHEK1	nc|ENSG00000149554|O14757-2|CHEK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7537231445312	2	545.752941	1089.49133	1.8643	0.0010174	-0.95114	-0.00051909	0.91312	0.00049834	545.7525586329995	31.852	0.45769	31.852	31.613	32.07	0					22	11	3	0	0	0	0.27249	1	11598	11598		52.937	14.131	1	304220			27200	4894	18409	18473	27560	27560					-0.04983664330939064
MPEPDAQRF	9	Unmodified	_MPEPDAQRF_					0	0	0		nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1;CHEK1|p.I234Nfs*11|1|0.24|ENSG00000149554|chr11:125635508-125635509|-/A|frameshift_variant	nc|ENSG00000149554|O14757-2|CHEK1	nc|ENSG00000149554|O14757-2|CHEK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7529907226562	2	545.752941	1089.49133	0.88449	0.00048271	-0.62579	-0.00034153	0.2587	0.00014119	545.7529163031519	31.852	0.30637	31.852	31.622	31.928	0					16	6	4	0	0	0	0.24334	1	12005	12005		56.434	22.261	1	156210			27201	4894	18409	18473	27561	27561					-0.04983664330939064
MPEPDAQRF	9	Unmodified	_MPEPDAQRF_					0	0	0		nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1;CHEK1|p.I234Nfs*11|1|0.24|ENSG00000149554|chr11:125635508-125635509|-/A|frameshift_variant	nc|ENSG00000149554|O14757-2|CHEK1	nc|ENSG00000149554|O14757-2|CHEK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7536010742188	2	545.752941	1089.49133	0.56184	0.00030662	0.24134	0.00013171	0.80318	0.00043834	545.7531365451076	31.781	0.36611	31.781	31.617	31.984	0					20	7	4	0	0	0	0.0406	1	11904	11904		98.629	43.125	1	377170			27202	4894	18409	18473	27562	27562					-0.04983664330939064
MPEVRQSSF	9	Unmodified	_MPEVRQSSF_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;ENST00000426249.1_1_17:18365525-18365891:+|nuORF;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7619018554688	2	540.760766	1079.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.263	1	31.263	30.763	31.763	0								0	0	0	0.22075	1	11670	11670		47.96	5.5634	1				27203	1694;2371	18410	18474	27563	27563					-0.029593778138632842
MPFKKGAAF	9	Unmodified	_MPFKKGAAF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.7703552246094	2	498.770406	995.526258	0.68188	0.0003401	0.87582	0.00043683	1.5577	0.00077694	498.7715157446588	28.506	0.85294	28.506	28.165	29.018	0					55	21	5	0	0	0	0.13519	2	9978	9978;10157		71.296	26.765	1	1663500			27204	6315	18411	18475	27564;27565	27564					0.028316232676843356
MPFKKGAAF	9	Unmodified	_MPFKKGAAF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7703552246094	2	498.770406	995.526258	-1.0777	-0.00053751	0.76204	0.00038009	-0.31563	-0.00015743	498.770920607855	28.186	0.6448	28.186	27.96	28.605	0					52	23	3	0	0	0	0.1236	1	9019	9019		73.975	73.975	1	273730			27205	6315	18411	18475	27566	27566					0.028316232676843356
MPFKKGAAF	9	Unmodified	_MPFKKGAAF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.77032470703125	2	498.770406	995.526258	0.84475	0.00042134	-1.3654	-0.00068102	-0.52065	-0.00025968	498.7699832642701	28.37	1.0849	28.37	28.126	29.211	0					58	22	4	0	0	0	0.032656	1	10358	10358		106.42	53.064	1	1860700			27206	6315	18411	18475	27567	27567					0.028316232676843356
MPFKKGAAF	9	Unmodified	_MPFKKGAAF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.77056884765625	2	498.770406	995.526258	0.17044	8.5008E-05	1.824	0.00090973	1.9944	0.00099474	498.7717669851362	28.151	0.58073	28.151	28.032	28.613	0					30	14	3	0	0	0	0.037966	1	9317	9317		101.21	35.314	1	206470			27207	6315	18411	18475	27568	27568					0.028316232676843356
MPFKKGAAF	9	Unmodified	_MPFKKGAAF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7700500488281	2	498.770406	995.526258	1.0513	0.00052437	-1.3476	-0.00067213	-0.29623	-0.00014775	498.7703062594497	28.337	0.91679	28.337	28.092	29.009	0					60	18	5	0	0	0	0.032656	2	10203	10203;10393		106.42	63.306	1	2053100			27208	6315	18411	18475	27569;27570	27569					0.028316232676843356
MPFLLICR	8	Unmodified	_MPFLLICR_					0	0	0			REV__SEMA5A|p.Q919R|1|0.18|ENSG00000112902|chr5:9051962-9051962|T/C|missense_variant	REV__SEMA5A|p.Q919R|1|0.18|ENSG00000112902|chr5:9051962-9051962|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.77398681640625	2	496.774634	991.534715	0.76308	0.00037908	-2.6693	-0.001326	-1.9062	-0.00094695	496.7736673765992	41.04	0.51031	41.04	40.756	41.266	0					33	16	3	0	0	0	0.41952	1	16111	16111		57.453	2.6763	1	547750	+		27209	21501	18412	18476	27571	27571					0.03860853912658513
MPFPEHMNQNC	11	Unmodified	_MPFPEHMNQNC_					0	0	0			REV__ENST00000517832.1_1_8:99446484-99539107:-|nuORF	REV__ENST00000517832.1_1_8:99446484-99539107:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.8472595214844	3	449.847476	1346.5206	0.87576	0.00039396	-2.0957	-0.00094276	-1.22	-0.00054881	449.8468846815592	26.34	0.26818	26.34	26.234	26.502	0					17	5	4	0	0	0	0.73562	1	9309	9309		24.232	5.7008	1	858560	+		27210	13723	18413	18477	27572	27572					-0.1388021136858697
MPFVHVVY	8	Oxidation (M)	_M(Oxidation (M))PFVHVVY_		M(1)PFVHVVY		M(67)PFVHVVY	0	0	1		ENST00000602122.5_1_19:35739636-35739768:+|nuORF	ENST00000602122.5_1_19:35739636-35739768:+|nuORF	ENST00000602122.5_1_19:35739636-35739768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2550964355469	2	504.254588	1006.49462	0.094003	4.7402E-05	-0.70444	-0.00035522	-0.61043	-0.00030781	504.2542966294672	38.687	0.14864	38.687	38.601	38.75	0					8	5	2	0	0	0	0.42924	1	15172	15172		67.327	33.834	1	77381			27211	11040	18414	18478	27573	27573		429			-0.00836369486262356
MPFVHVVY	8	Unmodified	_MPFVHVVY_					0	0	0		ENST00000602122.5_1_19:35739636-35739768:+|nuORF	ENST00000602122.5_1_19:35739636-35739768:+|nuORF	ENST00000602122.5_1_19:35739636-35739768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2568359375	2	496.257131	990.499709	-0.6827	-0.00033879	1.1962	0.0005936	0.51345	0.0002548	496.2578227571514	44.661	0.4164	44.661	44.513	44.929	0					26	17	3	0	0	0	0.24367	1	17876	17876		112.7	64.789	1	204210			27212	11040	18414	18479	27574	27574					0.004079343763578436
MPGGGGPP	8	Unmodified	_MPGGGGPP_					0	0	0			REV__ZDHHC14|p.Y146Tfs*17|1|0.38|ENSG00000175048|chr6:157593011-157593011|G/-|frameshift_variant	REV__ZDHHC14|p.Y146Tfs*17|1|0.38|ENSG00000175048|chr6:157593011-157593011|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.1540222167969	2	335.154874	668.295196	-0.66791	-0.00022385	-1.4668	-0.00049161	-2.1347	-0.00071546	335.15438749864376	43.795	0.23489	43.795	43.698	43.933	0					21	14	2	0	0	0	0.78431	1	14284	14284		10.185	0	1	97514	+		27213	16598	18415	18480	27575	27575					-0.052220047141759096
MPGVPGAWPC	10	Unmodified	_MPGVPGAWPC_					0	0	0			REV__ENST00000600410.5_1_19:48257983-48259211:+|nuORF	REV__ENST00000600410.5_1_19:48257983-48259211:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7317199707031	2	507.730423	1013.44629	2.9527	0.0014992	-0.22368	-0.00011357	2.729	0.0013856	507.73014351207655	32.665	1.6484	32.665	31.684	33.332	0					76	33	5	0	0	0	0.50739	1	12318	12318		44.531	44.531	1	1668100	+		27214	20595	18416	18481	27576	27576					-0.05989186397823687
MPHKAKFIN	9	Unmodified	_MPHKAKFIN_					0	0	0			REV__nc|ENSG00000183020|O94973-2|AP2A2	REV__nc|ENSG00000183020|O94973-2|AP2A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3012084960938	2	543.299862	1084.58517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.075	1	46.075	45.575	46.575	0								0	0	0	0.28996	1	18445	18445		37.159	6.6555	1		+		27215	16905	18417	18482	27577	27577					0.04626099562028685
MPHWVRGAL	9	Unmodified	_MPHWVRGAL_					0	0	0		nc|ENSG00000120903|Q15822-2|CHRNA2;ENSG00000120903|ENST00000407991|CHRNA2	nc|ENSG00000120903|Q15822-2|CHRNA2	nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7858276367188	2	533.784379	1065.5542	2.2966	0.0012259	0.52831	0.00028201	2.8249	0.0015079	533.7845537932662	23.923	0.1917	23.923	23.832	24.024	0					9	4	3	0	0	0	0.32741	1	8001	8001		47.916	10.104	1	446090			27216	3201	18418	18483	27578	27578					0.024049462477705674
MPIVHRDL	8	Unmodified	_MPIVHRDL_					0	0	0		TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7703857421875	2	490.770937	979.527321	-2.7578	-0.0013535	2.1372	0.0010489	-0.62064	-0.00030459	490.7722804987554	35.421	0.20401	35.421	35.32	35.524	0					13	7	2	0	0	0	0.62915	1	12619	12619		42.396	1.8235	1	187090			27217	5568	18419	18484	27579	27579					0.03673837636574717
MPKCLPPG	8	Unmodified	_MPKCLPPG_					0	0	0		NCOA6|p.R514C|1|0.15|ENSG00000198646|chr20:34754857-34754857|G/A|missense_variant	NCOA6|p.R514C|1|0.15|ENSG00000198646|chr20:34754857-34754857|G/A|missense_variant	NCOA6|p.R514C|1|0.15|ENSG00000198646|chr20:34754857-34754857|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7184753417969	2	421.716784	841.419016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.504	1	12.504	12.004	13.004	0								0	0	0	1.7419	1	2830	2830		37.028	5.0736	1				27218	11845	18420	18485	27580	27580					-0.008036699381932522
MPKDLNVGQ	9	Unmodified	_MPKDLNVGQ_					0	0	0		nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.25799560546875	2	501.257859	1000.50117	-0.59133	-0.00029641	1.4004	0.00070196	0.80907	0.00040555	501.2588202445865	35.187	0.56909	35.187	34.88	35.449	0					27	11	3	0	0	0	0.54267	1	13503	13503		27.882	1.0861	1	440780			27219	4796	18421	18486	27581	27581					0.0009352367444535048
MPKGMWIC	8	Unmodified	_MPKGMWIC_					0	0	0		KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A;KAT6B|p.S371Hfs*86|1|0.14|ENSG00000156650|chr10:74975443-74975443|G/-|frameshift_variant;KAT6B|p.K962Sfs*2|1|0.13|ENSG00000156650|chr10:75021146-75021146|A/-|frameshift_variant;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.22515869140625	2	483.223919	964.433286	0.68024	0.00032871	1.694	0.00081856	2.3742	0.0011473	483.22475568156125	38.643	0.19928	38.643	38.567	38.766	0					11	7	2	0	0	0	0.61433	1	15166	15166		46.766	5.9883	1	81943			27220	1690;5183	18422	18487	27582	27582					-0.05035340781569175
MPKHNPFFT	9	Unmodified	_MPKHNPFFT_					0	0	0			REV__ENSG00000185666|ENST00000358763|SYN3	REV__ENSG00000185666|ENST00000358763|SYN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.7755126953125	2	559.776219	1117.53789	1.2843	0.00071894	-2.6155	-0.0014641	-1.3311	-0.00074514	559.7743512114878	20.099	0.11076	20.099	20.023	20.134	0					5	3	2	0	0	0	0.45358	1	5315	5315		37.159	2.9866	1	71729	+		27221	17041	18423	18488	27583	27583					-0.016181797089984684
MPKMDQDSL	9	Unmodified	_MPKMDQDSL_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7412109375	2	532.741185	1063.46782	0.12749	6.7921E-05	0.12283	6.5434E-05	0.25032	0.00013336	532.7411180626401	32.941	0.30887	32.941	32.775	33.084	0					13	8	2	0	0	0	0.12278	1	12126	12126		74.165	7.7357	1	450140			27222	1623	18424	18489	27584	27584					-0.0613784615975419
MPKMDQDSL	9	Unmodified	_MPKMDQDSL_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7411499023438	2	532.741185	1063.46782	0.2892	0.00015407	-0.34299	-0.00018273	-0.053795	-2.8659E-05	532.7413155585846	32.91	0.30847	32.91	32.743	33.052	0					19	7	4	0	0	0	0.18416	1	12533	12533		63.534	8.0296	1	408450			27223	1623	18424	18489	27585	27585					-0.0613784615975419
MPKRKSPE	8	Unmodified	_MPKRKSPE_					0	0	0		nc|ENSG00000118418|Q15651-2|HMGN3;nc|ENSG00000118418|Q15651|HMGN3;ENSG00000118418|ENST00000620514|HMGN3	nc|ENSG00000118418|Q15651-2|HMGN3	nc|ENSG00000118418|Q15651-2|HMGN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7681884765625	2	486.768394	971.522236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.894	1	34.894	34.394	35.394	0								0	0	0	1.7419	1	13420	13420		99.375	8.5983	1				27224	3073	18425	18490	27586	27586					0.035335337739752504
MPKVHIEF	8	Unmodified	_MPKVHIEF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.76824951171875	2	500.767863	999.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.742	1	37.742	37.242	38.242	0								0	0	0	1.7419	1	14781	14781		53.351	8.8204	1				27225	2930	18426	18491	27587	27587					0.02139319405068818
MPKVHIEF	8	Unmodified	_MPKVHIEF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7679748535156	2	500.767863	999.521173	1.1057	0.0005537	-0.73839	-0.00036976	0.3673	0.00018393	500.76714307618545	37.699	0.35366	37.699	37.45	37.804	0					19	7	3	0	0	0	0.5535	1	14774	14774		27.882	7.4004	1	180700			27226	2930	18426	18491	27588	27588					0.02139319405068818
MPKVVSDLS	9	Unmodified	_MPKVVSDLS_					0	0	0			REV__TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant	REV__TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.26422119140625	2	488.26261	974.510668	2.5877	0.0012635	1.2142	0.00059285	3.8019	0.0018563	488.2630190779233	13.842	0.21059	13.842	13.783	13.994	0					9	4	3	0	0	0	0.43426	1	3320	3320		38.806	0	1	434150	+		27227	13919	18427	18492	27589	27589					0.022392919599724337
MPLAFSDKY	9	Unmodified	_MPLAFSDKY_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2631225585938	2	536.26261	1070.51067	1.933	0.0010366	-1.5128	-0.00081125	0.42022	0.00022535	536.2607648507736	40.933	0.75891	40.933	40.439	41.198	0					31	15	4	0	0	0	0.095583	1	16263	16263		80.455	16.247	1	162530			27228	3824	18428	18493	27590	27590					-0.021767080400195482
MPLAKDGLAM	10	Oxidation (M)	_MPLAKDGLAM(Oxidation (M))_		MPLAKDGLAM(1)		M(-57)PLAKDGLAM(57)	0	0	1		COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant;ENSG00000144810|ENST00000652472|COL8A1	COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7698364257812	2	531.769745	1061.52494	1.7173	0.00091323	-1.1376	-0.00060494	0.57974	0.00030829	531.7691742138007	30.592	0.24551	30.592	30.448	30.694	0					16	5	4	0	0	0	0.36476	1	11445	11445		60.118	12.461	2	1287600			27229	615	18429	18494	27591	27591		32			-0.003363788833894432
MPLCWSKPC	9	Unmodified	_MPLCWSKPC_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-2|CRB1;CRB1|p.P1400Lfs*6|1|0.36|ENSG00000134376|chr1:197477853-197477853|C/-|frameshift_variant;ENSG00000134376|ENST00000367400|CRB1	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7416381835938	2	532.739934	1063.46531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.658	1	32.658	32.158	33.158	0								0	0	0	0.22106	1	10568	10568		47.916	0.25827	1				27230	687	18430	18495	27592	27592					-0.06387973098435396
MPLECAIH	8	Unmodified	_MPLECAIH_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF;LIFR|p.F700Sfs*16|1|0.11|ENSG00000113594|chr5:38490258-38490258|A/-|frameshift_variant	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2177429199219	2	457.217149	912.419744	0.87903	0.00040191	-1.0925	-0.00049952	-0.21349	-9.7613E-05	457.2165867769789	42.71	0.41552	42.71	42.407	42.823	0					20	11	2	0	0	0	0.68754	1	17017	17017		35.201	1.6851	1	89015			27231	2812	18431	18496	27593	27593					-0.03996875289158197
MPLHLLGCLL	10	Unmodified	_MPLHLLGCLL_					0	0	0		ENST00000431994.5_1_16:32890029-32891910:-|nuORF	ENST00000431994.5_1_16:32890029-32891910:-|nuORF	ENST00000431994.5_1_16:32890029-32891910:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.31494140625	2	555.314123	1108.61369	-0.07543	-4.1887E-05	0.48645	0.00027013	0.41102	0.00022825	555.3142009575903	39.215	0.39066	39.215	39.038	39.428	0					27	13	3	0	0	0	0.661	1	15361	15361		26.796	0.10319	1	190690			27232	9505	18432	18497	27594	27594					0.0637308114694406
MPMVTDNKM	9	Unmodified	_MPMVTDNKM_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.740234375	2	533.740131	1065.46571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.69	1	31.69	31.19	32.19	0								0	0	0	0.024201	1	11563	11563		98.629	18.175	1				27233	6529	18433	18498	27595	27595					-0.06440598169228906
MPMVTDNKM	9	Unmodified	_MPMVTDNKM_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7411499023438	2	533.740131	1065.46571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.502	1	31.502	31.002	32.002	0								0	0	0	0.18645	1	10854	10854		52.937	15.778	1				27234	6529	18433	18498	27596	27596					-0.06440598169228906
MPMVTDNKM	9	Unmodified	_MPMVTDNKM_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7402954101562	2	533.740131	1065.46571	0.71365	0.00038091	0.07075	3.7762E-05	0.7844	0.00041867	533.7400294011265	31.675	0.26373	31.675	31.471	31.735	0					8	5	2	0	0	0	0.098791	1	11859	11859		79.713	24.208	1	224960			27235	6529	18433	18498	27597	27597					-0.06440598169228906
MPMVTDNKM	9	Unmodified	_MPMVTDNKM_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7408447265625	2	533.740131	1065.46571	1.8114	0.0009668	-1.033	-0.00055136	0.77836	0.00041544	533.7400334684709	31.66	0.31285	31.66	31.505	31.818	0					16	6	4	0	0	0	0.078509	1	11875	11875		85.161	28.44	1	356420			27236	6529	18433	18498	27598	27598					-0.06440598169228906
MPNGDHIVSA	10	Unmodified	_MPNGDHIVSA_					0	0	0		ENST00000572915.6_1_17:2573570-2586914:+|nuORF;nc|ENSG00000007168|P43034-2|PAFAH1B1;ENSG00000007168|ENST00000397195|PAFAH1B1	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7459716796875	2	520.745116	1039.47568	1.473	0.00076705	-0.58205	-0.0003031	0.89093	0.00046395	520.744817993814	27.616	0.16071	27.616	27.533	27.694	0					7	5	2	0	0	0	0.68774	1	8541	8541		23.523	0.48021	1	32447			27237	995	18434	18499	27599	27599					-0.04247950847980064
MPNGDHIVSA	10	Unmodified	_MPNGDHIVSA_					0	0	0		ENST00000572915.6_1_17:2573570-2586914:+|nuORF;nc|ENSG00000007168|P43034-2|PAFAH1B1;ENSG00000007168|ENST00000397195|PAFAH1B1	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7451171875	2	520.745116	1039.47568	1.4784	0.00076986	-1.1058	-0.00057582	0.37262	0.00019404	520.7445087442227	27.867	0.26609	27.867	27.749	28.015	0					16	6	4	0	0	0	0.46128	1	9782	9782		49.536	10.73	1	293210			27238	995	18434	18499	27600	27600					-0.04247950847980064
MPNGDHIVSA	10	Unmodified	_MPNGDHIVSA_					0	0	0		ENST00000572915.6_1_17:2573570-2586914:+|nuORF;nc|ENSG00000007168|P43034-2|PAFAH1B1;ENSG00000007168|ENST00000397195|PAFAH1B1	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.745361328125	2	520.745116	1039.47568	0.35651	0.00018565	0.58437	0.00030431	0.94087	0.00048995	520.7453346433535	27.821	0.16619	27.821	27.712	27.878	0					8	3	3	0	0	0	0.5155	1	10017	10017		43.651	18.201	1	298870			27239	995	18434	18499	27601	27601					-0.04247950847980064
MPNGTVQRF	9	Unmodified	_MPNGTVQRF_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000582406.1_1_17:65940388-65941531:+|nuORF;ENST00000584931.1_1_17:65936727-65940601:+|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2651977539062	2	525.263476	1048.5124	1.3946	0.00073255	-0.84543	-0.00044407	0.5492	0.00028848	525.2633283732749	28.915	0.35056	28.915	28.753	29.104	0					17	12	2	0	0	0	0.3269	1	9047	9047		47.96	8.7067	1	70239			27240	314	18435	18500	27602	27602					-0.009916542314158505
MPNGTVQRF	9	Unmodified	_MPNGTVQRF_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000582406.1_1_17:65940388-65941531:+|nuORF;ENST00000584931.1_1_17:65936727-65940601:+|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2634887695312	2	525.263476	1048.5124	0.57761	0.0003034	-0.07515	-3.9473E-05	0.50246	0.00026392	525.2636704846589	28.903	0.24572	28.903	28.798	29.043	0					21	9	3	0	0	0	0.28897	1	9349	9349		51.193	17.677	1	120850			27241	314	18435	18500	27603	27603					-0.009916542314158505
MPNGTVQRF	9	Unmodified	_MPNGTVQRF_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000582406.1_1_17:65940388-65941531:+|nuORF;ENST00000584931.1_1_17:65936727-65940601:+|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.263427734375	2	525.263476	1048.5124	1.7753	0.0009325	-1.4826	-0.00077877	0.29268	0.00015373	525.2627227965863	29.129	0.32688	29.129	29.007	29.334	0					14	7	2	0	0	0	0.070005	1	10779	10779		88.177	40.261	1	609270			27242	314	18435	18500	27604	27604					-0.009916542314158505
MPNGTVQRF	9	Unmodified	_MPNGTVQRF_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000582406.1_1_17:65940388-65941531:+|nuORF;ENST00000584931.1_1_17:65936727-65940601:+|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2636108398438	2	525.263476	1048.5124	1.167	0.00061299	-1.2772	-0.00067086	-0.11017	-5.7871E-05	525.2627345298074	28.927	0.25708	28.927	28.836	29.094	0					10	6	2	0	0	0	0.34452	1	9679	9679		46.457	2.34	1	116360			27243	314	18435	18500	27605	27605					-0.009916542314158505
MPNGTVQRF	9	Unmodified	_MPNGTVQRF_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000582406.1_1_17:65940388-65941531:+|nuORF;ENST00000584931.1_1_17:65936727-65940601:+|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2636108398438	2	525.263476	1048.5124	1.6274	0.00085482	-1.9365	-0.0010172	-0.30909	-0.00016235	525.2626910956044	29.051	0.31627	29.051	28.941	29.258	0					22	6	4	0	0	0	0.047855	1	10634	10634		96.034	41.257	1	795010			27244	314	18435	18500	27606	27606					-0.009916542314158505
MPNKTELLK	9	Unmodified	_MPNKTELLK_					0	0	0		ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3050537109375	2	537.30481	1072.59507	0.21493	0.00011548	0.45966	0.00024698	0.67459	0.00036246	537.3050838555132	41.702	0.26196	41.702	41.595	41.857	0					28	13	3	0	0	0	0.20551	1	15825	15825		60.972	0.67798	1	289280			27245	6689	18436	18501	27607	27607					0.06167242776700732
MPNSPAPHF	9	Unmodified	_MPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2313232421875	2	499.231645	996.448736	0.67594	0.00033745	-1.1972	-0.00059769	-0.52129	-0.00026024	499.2311477659916	32.402	0.33129	32.402	32.223	32.555	0					20	8	3	0	0	0	0.10915	1	11877	11877		77.318	36.745	1	447090			27246	2732	18437	18502	27608	27608					-0.04963014668510368
MPNSPAPHF	9	Unmodified	_MPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2326354980469	2	499.231645	996.448736	-0.01155	-5.7663E-06	-0.61548	-0.00030727	-0.62703	-0.00031303	499.231429398129	32.406	0.34044	32.406	32.242	32.582	0					21	8	4	0	0	0	0.30841	1	12272	12272		49.536	1.6204	1	293250			27247	2732	18437	18502	27609	27609					-0.04963014668510368
MPNSPAPHF	9	Unmodified	_MPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2317199707031	2	499.231645	996.448736	-0.33299	-0.00016624	0.10148	5.0664E-05	-0.23151	-0.00011558	499.23187471797326	32.219	0.25565	32.219	32.048	32.303	0					10	7	2	0	0	0	0.35021	1	11172	11172		45.972	5.3996	1	83965			27248	2732	18437	18502	27610	27610					-0.04963014668510368
MPNSPAPHF	9	Unmodified	_MPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2313232421875	2	499.231645	996.448736	-0.72999	-0.00036443	0.67945	0.0003392	-0.050536	-2.5229E-05	499.23207920193823	32.367	0.42044	32.367	32.119	32.54	0					19	8	3	0	0	0	0.22837	1	12165	12165		58.23	17.657	1	623560			27249	2732	18437	18502	27611	27611					-0.04963014668510368
MPNSPAPHF	9	Unmodified	_MPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2310791015625	2	499.231645	996.448736	1.0594	0.00052889	-1.5828	-0.00079019	-0.5234	-0.0002613	499.23100545062863	32.412	0.37027	32.412	32.203	32.573	0					18	7	3	0	0	0	0.07136	1	12183	12183		87.696	24.39	1	458220			27250	2732	18437	18502	27612	27612					-0.04963014668510368
MPNVKVAVF	9	Unmodified	_MPNVKVAVF_					0	0	0		DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7833557128906	2	502.783513	1003.55247	0.72498	0.00036451	0.55383	0.00027845	1.2788	0.00064296	502.78361177153977	42.797	0.16219	42.797	42.672	42.835	0					10	7	2	0	0	0	0.22837	1	16176	16176		60.972	22.166	1	43374			27251	759	18438	18503	27613	27613					0.05083892439165538
MPNVKVAVF	9	Unmodified	_MPNVKVAVF_					0	0	0		DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7845458984375	2	502.783513	1003.55247	0.063749	3.2052E-05	1.3131	0.00066022	1.3769	0.00069227	502.78419456751305	42.744	0.20748	42.744	42.619	42.826	0					15	9	2	0	0	0	0.22837	1	16748	16748		51.335	17.82	1	61263			27252	759	18438	18503	27614	27614					0.05083892439165538
MPNVKVAVF	9	Unmodified	_MPNVKVAVF_					0	0	0		DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7832336425781	2	502.783513	1003.55247	-0.4819	-0.00024229	0.81226	0.00040839	0.33036	0.0001661	502.78403715146493	42.687	0.36739	42.687	42.522	42.889	0					20	10	3	0	0	0	0.063823	1	17022	17022		85.359	53.405	1	234640			27253	759	18438	18503	27615	27615					0.05083892439165538
MPPAQIQSPP	10	Unmodified	_MPPAQIQSPP_					0	0	0			REV__ENSG00000084463|ENST00000261167|WBP11	REV__ENSG00000084463|ENST00000261167|WBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7799682617188	2	533.273509	1064.53247	1.7403	0.00092804	1.83	0.00097587	3.5702	0.0019039	533.2730210076692	31.853	0.58558	31.853	31.605	32.191	0					22	12	3	0	0	0	0.56931	1	12090	12090		37.812	7.3079	1	610140	+		27254	13346	18439	18504	27616	27616					0.00278096708530029
MPPPPPPVPPA	11	Unmodified	_MPPPPPPVPPA_					0	0	0		ENSG00000004975|ENST00000005340|DVL2	ENSG00000004975|ENST00000005340|DVL2	ENSG00000004975|ENST00000005340|DVL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7975463867188	2	548.79662	1095.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.028	1	45.028	44.528	45.528	0								0	0	0	0.42301	1	17468	17468		31.955	1.4512	1				27255	949	18440	18505	27617	27617					0.03472161610625335
MPPRFIMP	8	Unmodified	_MPPRFIMP_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7598876953125	2	494.758984	987.503414	-0.41386	-0.00020476	-2.5324	-0.0012529	-2.9463	-0.0014577	494.7601756513099	32.192	0.45938	32.192	32.005	32.464	0					32	11	4	0	0	0	0.4723	1	11871	11871		62.978	8.2561	1	147230			27256	11595	18441	18506	27618	27618					0.009162808785617926
MPPSLPTSV	9	Unmodified	_MPPSLPTSV_					0	0	0		YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;YLPM1|p.P816Qfs*13|1|0.4|ENSG00000119596|chr14:74797738-74797738|G/-|frameshift_variant	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7421569824219	2	464.744053	927.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.882	1	36.882	36.382	37.382	0								0	0	0	0.12457	1	13944	13944		65.803	0	1				27257	3125	18442	18507	27619	27619					0.006916204142157767
MPPSLRSPP	9	Unmodified	_MPPSLRSPP_					0	0	0			REV__ENSG00000162624|ENST00000356261|LHX8	REV__ENSG00000162624|ENST00000356261|LHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2623596191406	2	491.262945	980.511337	-0.52532	-0.00025807	-0.5085	-0.00024981	-1.0338	-0.00050787	491.2627551160648	33.502	0.21493	33.502	33.405	33.62	0					12	5	3	0	0	0	0.45358	1	12417	12417		37.159	0.13063	1	222960	+		27258	15825	18443	18508	27620	27620					0.020301313996924364
MPPVVVYLN	9	Unmodified	_MPPVVVYLN_					0	0	0			REV__ENSG00000176787|ENST00000321522|OR52E2	REV__ENSG00000176787|ENST00000321522|OR52E2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.79052734375	2	516.283346	1030.55214	1.3314	0.00068739	4.3143	0.0022274	5.6457	0.0029148	516.284586085733	31.251	0.14415	31.251	31.181	31.325	0					10	6	2	0	0	0	0.41354	1	10049	10049		40.573	1.5511	1	93713	+		27259	16670	18444	18509	27621	27621					0.03808472719310885
MPPYPGPGH	9	Unmodified	_MPPYPGPGH_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.72076416015625	2	476.720913	951.427273	-0.11822	-5.636E-05	-0.72162	-0.00034401	-0.83985	-0.00040037	476.72064986036156	27.475	1.5218	27.475	26.927	28.449	0					69	31	3	0	0	0	0.21025	3	9783	9783;9973;10161		60.404	60.404	1	293630			27260	6315	18445	18510	27622;27623;27624	27622					-0.05038399697218665
MPPYPGPGH	9	Unmodified	_MPPYPGPGH_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.720947265625	2	476.720913	951.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.299	1	27.299	26.799	27.799	0								0	0	0	0.1476	1	8912	8912		60.404	27.591	1				27261	6315	18445	18510	27625	27625					-0.05038399697218665
MPPYPGPGH	9	Unmodified	_MPPYPGPGH_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.720458984375	2	476.720913	951.427273	-0.63225	-0.00030141	-0.20253	-9.6551E-05	-0.83478	-0.00039796	476.72093618410634	27.409	1.7224	27.409	26.902	28.624	0					82	34	3	0	0	0	0.21025	2	9702	9702;9893		60.404	23.245	1	460900			27262	6315	18445	18510	27626;27627	27626					-0.05038399697218665
MPQGAPRLY	9	Unmodified	_MPQGAPRLY_					0	0	0		nc|ENSG00000124126|Q8TCU6-2|PREX1;ENSG00000124126|ENST00000371941|PREX1;ENST00000482556.5_1_20:47242425-47249020:-|nuORF	nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7688598632812	2	516.768394	1031.52224	0.2017	0.00010423	0.53327	0.00027558	0.73497	0.00037981	516.7687739470946	33.752	0.42116	33.752	33.6	34.021	0					17	9	2	0	0	0	0.26904	1	12853	12853		53.351	14.545	1	171500			27263	3345	18446	18511	27628	27628					0.007735337739632087
MPQGGGQHY	9	Unmodified	_MPQGGGQHY_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7109069824219	2	487.711076	973.4076	-0.068338	-3.3329E-05	-0.45884	-0.00022378	-0.52718	-0.00025711	487.7110043764041	19.942	0.52645	19.942	19.862	20.389	0					47	16	4	0	0	0	0.013544	1	5246	5246		133.47	92.691	1	1211800			27264	4440	18447	18512	27629	27629					-0.08016775707972101
MPQGGGQHY	9	Unmodified	_MPQGGGQHY_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.71099853515625	2	487.711076	973.4076	-1.2467	-0.00060805	1.7521	0.00085454	0.5054	0.00024649	487.7115560007686	19.991	0.34237	19.991	19.906	20.248	0					27	11	3	0	0	0	0.032656	1	5511	5511		106.42	65.843	1	284990			27265	4440	18447	18512	27630	27630					-0.08016775707972101
MPQGGGQHY	9	Unmodified	_MPQGGGQHY_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7108154296875	2	487.711076	973.4076	-0.081353	-3.9677E-05	-0.8253	-0.00040251	-0.90666	-0.00044219	487.7108155893116	20.187	1.0166	20.187	20.028	21.045	0					56	20	5	0	0	0	0.020824	2	6489	6489;6660		120.62	69.286	1	5358400			27266	4440	18447	18512	27631;27632	27631					-0.08016775707972101
MPQGGGQHY	9	Unmodified	_MPQGGGQHY_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.71099853515625	2	487.711076	973.4076	0.6261	0.00030536	-0.19555	-9.5373E-05	0.43055	0.00020999	487.71062011256276	20.17	0.56677	20.17	20.062	20.629	0					36	11	4	0	0	0	0.032656	1	6506	6506		106.42	60.443	1	2338800			27267	4440	18447	18512	27633	27633					-0.08016775707972101
MPQGGGQHY	9	Unmodified	_MPQGGGQHY_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.71112060546875	2	487.711076	973.4076	0.4677	0.0002281	-0.63543	-0.00030991	-0.16772	-8.1801E-05	487.7109444852147	20.07	0.4514	20.07	19.932	20.383	0					29	10	4	0	0	0	0.036372	1	5547	5547		102.77	58.657	1	792260			27268	4440	18447	18512	27634	27634					-0.08016775707972101
MPQGGGQHY	9	Unmodified	_MPQGGGQHY_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.71075439453125	2	487.711076	973.4076	-0.21565	-0.00010517	-0.27207	-0.00013269	-0.48771	-0.00023786	487.71098911537604	20.09	0.57285	20.09	19.919	20.492	0					32	13	4	0	0	0	0.018419	1	5559	5559		124.59	77.828	1	813330			27269	4440	18447	18512	27635	27635					-0.08016775707972101
MPQGGGQHY	9	Unmodified	_MPQGGGQHY_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7108459472656	2	487.711076	973.4076	-0.53032	-0.00025864	-0.31723	-0.00015472	-0.84755	-0.00041336	487.71098218484434	20.202	1.1664	20.202	19.842	21.008	0					65	23	5	0	0	0	0.0090636	2	6363	6363;6534		143.02	84.237	1	8344600			27270	4440	18447	18512	27636;27637	27636					-0.08016775707972101
MPQGGGQHY	9	Oxidation (M)	_M(Oxidation (M))PQGGGQHY_		M(1)PQGGGQHY		M(85)PQGGGQHY	0	0	1		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7081604003906	2	495.708534	989.402514	-0.038189	-1.8931E-05	-0.44129	-0.00021875	-0.47948	-0.00023768	495.70828297255554	16.489	0.50494	16.489	16.28	16.785	0					18	10	2	0	0	0	0.077948	1	4665	4665		85.359	39.408	1	174860			27271	4440	18447	18513	27638	27638		182			-0.09261079570592301
MPQTLPFSPL	10	Oxidation (M)	_M(Oxidation (M))PQTLPFSPL_		M(1)PQTLPFSPL		M(70)PQTLPFSPL	0	0	1		WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant	WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant	WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.7960205078125	2	573.796817	1145.57908	1.0592	0.00060779	-4.0264	-0.0023104	-2.9672	-0.0017026	573.7946077313155	29.495	0.1437	29.495	29.379	29.523	0					7	4	2	0	0	0	0.28036	1	9303	9303		69.628	11.398	1	88400			27272	23119	18448	18514	27639	27639		831			0.012115365398130962
MPRACLKPD	9	Unmodified	_MPRACLKPD_					0	0	0			REV__ENSG00000255582|ENST00000542433|OR10G2	REV__ENSG00000255582|ENST00000542433|OR10G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.76171875	2	515.762255	1029.50996	-0.079071	-4.0782E-05	-0.086171	-4.4444E-05	-0.16524	-8.5226E-05	515.7624758104076	38.262	0.33164	38.262	38.107	38.439	0					29	17	3	0	0	0	0.20551	1	12895	12895		60.972	0.85368	1	270890	+		27273	17757	18449	18515	27640	27640					-0.0036182596072649176
MPRGERPM	8	Unmodified	_MPRGERPM_					0	0	0			REV__ENST00000472931.6_1_7:13946033-14025001:-|nuORF	REV__ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2386169433594	2	487.238947	972.46334	-0.0014396	-7.0144E-07	-1.2945	-0.00063075	-1.296	-0.00063146	487.2381016410604	24.394	0.074083	24.394	24.361	24.435	0					4	2	2	0	0	0	0.60719	1	7200	7200		47.916	7.343	1	65037	+		27274	12852	18450	18516	27641	27641					-0.02399265792018923
MPRLHWLV	8	Unmodified	_MPRLHWLV_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.2009582519531	3	351.200507	1050.57969	1.4587	0.00051228	0.7585	0.00026638	2.2171	0.00077866	351.2007405769244	38.576	0.30138	38.576	38.393	38.695	0					14	6	4	0	0	0	0.60719	1	15174	15174		47.916	5.0513	1	265170			27275	11646	18451	18517	27642	27642					0.05642420770186618
MPRVQTQQY	9	Unmodified	_MPRVQTQQY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.7869873046875	2	575.787315	1149.56008	0.96398	0.00055505	-1.9373	-0.0011155	-0.9733	-0.00056042	575.7866489265068	27.103	0.15297	27.103	27.001	27.154	0					11	5	3	0	0	0	0.18416	1	8319	8319		63.534	17.562	1	61342			27276	4281	18452	18518	27643	27643					-0.00872000031222342
MPRVQTQQY	9	Unmodified	_MPRVQTQQY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.7876586914062	2	575.787315	1149.56008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.35	1	27.35	26.85	27.85	0								0	0	0	0.095784	1	9543	9543		72.879	46.186	1				27277	4281	18452	18518	27644	27644					-0.00872000031222342
MPRVQTQQY	9	Unmodified	_MPRVQTQQY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.7881469726562	2	575.787315	1149.56008	0.051306	2.9541E-05	1.8492	0.0010647	1.9005	0.0010943	575.7883462404017	27.094	0.38669	27.094	26.866	27.253	0					17	13	2	0	0	0	0.035106	1	8595	8595		104.01	31.134	1	94519			27278	4281	18452	18518	27645	27645					-0.00872000031222342
MPRVQTQQY	9	Unmodified	_MPRVQTQQY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.7877197265625	2	575.787315	1149.56008	1.8395	0.0010592	-2.3182	-0.0013348	-0.4787	-0.00027563	575.7864831302309	27.372	0.70411	27.372	26.961	27.665	0					37	14	4	0	0	0	0.085655	1	9918	9918		82.75	31.415	1	796690			27279	4281	18452	18518	27646	27646					-0.00872000031222342
MPRVQTQQY	9	Unmodified	_MPRVQTQQY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.7891235351562	2	575.787315	1149.56008	-1.5536	-0.00089457	2.2803	0.001313	0.72663	0.00041839	575.7885141834895	27.16	0.41072	27.16	27.003	27.414	0					12	10	2	0	0	0	0.47473	1	8842	8842		35.152	4.8343	1	127530			27280	4281	18452	18518	27647	27647					-0.00872000031222342
MPRVQTQQY	9	Unmodified	_MPRVQTQQY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.7879638671875	2	575.787315	1149.56008	3.3101	0.0019059	-3.0904	-0.0017794	0.21973	0.00012651	575.7859226718756	27.299	0.97501	27.299	26.919	27.894	0					51	19	4	0	0	0	0.035106	1	9757	9757		104.01	41.906	1	824370			27281	4281	18452	18518	27648	27648					-0.00872000031222342
MPSASMTRL	9	Unmodified	_MPSASMTRL_					0	0	0		ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	ENSG00000104419|ENST00000323851|NDRG1;nc|ENSG00000103034|Q9ULP0-7|NDRG4	ENSG00000104419|ENST00000323851|NDRG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2466125488281	2	497.246437	992.478322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.726	1	32.726	32.226	33.226	0								0	0	0	0.24544	1	11409	11409		44.377	1.981	1				27282	2286;11465	18453	18519	27649	27649					-0.018218187146771925
MPSASMTRL	9	Unmodified	_MPSASMTRL_					0	0	0		ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	ENSG00000104419|ENST00000323851|NDRG1;nc|ENSG00000103034|Q9ULP0-7|NDRG4	ENSG00000104419|ENST00000323851|NDRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.24639892578125	2	497.246437	992.478322	-0.70462	-0.00035037	0.054541	2.712E-05	-0.65008	-0.00032325	497.24643408581704	32.883	0.21696	32.883	32.771	32.988	0					11	4	3	0	0	0	0.19952	1	12426	12426		61.691	3.88	1	415860			27283	2286;11465	18453	18519	27650	27650					-0.018218187146771925
MPSAVHPSPA	10	Unmodified	_MPSAVHPSPA_					0	0	0		ENST00000474140.1_1_1:3808157-3808313:-|nuORF	ENST00000474140.1_1_1:3808157-3808313:-|nuORF	ENST00000474140.1_1_1:3808157-3808313:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2461242675781	2	497.244752	992.474951	-0.028694	-1.4268E-05	2.2963	0.0011418	2.2676	0.0011276	497.2462617800107	32.927	0.27737	32.927	32.802	33.079	0					12	6	3	0	0	0	0.41335	1	12549	12549		54.776	8.3195	1	166150			27284	9892	18454	18520	27651	27651					-0.02158745497035852
MPSHPDRAY	9	Unmodified	_MPSHPDRAY_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2459716796875	2	537.245283	1072.47601	1.9049	0.0010234	-0.57113	-0.00030684	1.3338	0.00071656	537.2445101700476	20.797	0.16503	20.797	20.668	20.833	0					5	3	2	0	0	0	0.36892	1	6513	6513		44.377	2.9506	1	40042			27285	5431	18455	18521	27652	27652					-0.05732531128114715
MPSHPDRAY	9	Unmodified	_MPSHPDRAY_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2460327148438	2	537.245283	1072.47601	2.102	0.0011293	-1.6163	-0.00086837	0.48564	0.00026091	537.2444429352105	20.808	0.33195	20.808	20.61	20.942	0					16	7	3	0	0	0	0.13267	1	6507	6507		71.877	18.526	1	465260			27286	5431	18455	18521	27653	27653					-0.05732531128114715
MPSHPDRAY	9	Unmodified	_MPSHPDRAY_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.246826171875	2	537.245283	1072.47601	4.9812	0.0026761	-2.5421	-0.0013657	2.4391	0.0013104	537.2440889987645	20.545	0.16414	20.545	20.409	20.573	0					10	5	3	0	0	0	0.53064	1	5761	5761		29.17	6.1276	1	39576			27287	5431	18455	18521	27654	27654					-0.05732531128114715
MPSHPDRAY	9	Unmodified	_MPSHPDRAY_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.24609375	2	537.245283	1072.47601	1.313	0.0007054	-0.35406	-0.00019022	0.95893	0.00051518	537.245019265047	20.738	0.31768	20.738	20.529	20.847	0					16	6	3	0	0	0	0.33044	1	6732	6732		47.657	3.5405	1	385720			27288	5431	18455	18521	27655	27655					-0.05732531128114715
MPSHPDRAY	9	Unmodified	_MPSHPDRAY_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2457885742188	2	537.245283	1072.47601	0.6975	0.00037473	0.069404	3.7287E-05	0.76691	0.00041202	537.2453811279341	20.743	0.41532	20.743	20.544	20.96	0					19	8	4	0	0	0	0.19605	1	6608	6608		62.107	26.489	1	560120			27289	5431	18455	18521	27656	27656					-0.05732531128114715
MPSISSDRA	9	Unmodified	_MPSISSDRA_					0	0	0		ENSG00000106689|ENST00000373615|LHX2	ENSG00000106689|ENST00000373615|LHX2	ENSG00000106689|ENST00000373615|LHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.233154296875	2	482.231842	962.44913	3.4731	0.0016748	0.99348	0.00047909	4.4666	0.0021539	482.23207410089486	30.334	0.16966	30.334	30.198	30.368	0					9	5	2	0	0	0	0.44593	1	9961	9961		37.812	0.65241	1	38787			27290	2454	18456	18522	27657	27657					-0.0335963973931257
MPSKLILGQ	9	Unmodified	_MPSKLILGQ_					0	0	0			REV__ENST00000560115.5_1_15:81584907-81587720:+|nuORF	REV__ENST00000560115.5_1_15:81584907-81587720:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.78857421875	2	493.788795	985.563038	0.76789	0.00037917	-1.455	-0.00071848	-0.68714	-0.0003393	493.78811398275377	35.459	0.1972	35.459	35.383	35.58	0					9	5	2	0	0	0	0.12834	1	13310	13310		72.879	6.45	1	142030	+		27291	20281	18457	18523	27658	27658					0.06967875093596376
MPSKMGMADH	10	Unmodified	_MPSKMGMADH_					0	0	0			REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF	REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7350463867188	2	552.73538	1103.45621	3.6612	0.0020237	-3.2761	-0.0018108	0.3851	0.00021286	552.7332567588548	12.418	0.20773	12.418	12.319	12.526	0					9	6	2	0	0	0	0.73697	1	2625	2625		15.642	0.77694	1	73417	+		27292	19082	18458	18524	27659	27659					-0.09138366454726565
MPSKVVILRY	10	Unmodified	_MPSKVVILRY_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.57391357421875	3	402.57401	1204.7002	0.54344	0.00021877	-1.0752	-0.00043284	-0.53176	-0.00021407	402.5737436827273	34.973	0.46417	34.973	34.815	35.279	0					21	9	3	0	0	0	0.57211	1	13473	13473		37.508	2.3561	1	296630			27293	3295	18459	18525	27660	27660					0.10603783973147074
MPSLKIPKVD	10	Oxidation (M)	_M(Oxidation (M))PSLKIPKVD_		M(1)PSLKIPKVD		M(43)PSLKIPKVD	0	0	1		AHNAK2|p.M2081I|1|0.06|ENSG00000185567|chr14:104949208-104949208|C/T|missense_variant	AHNAK2|p.M2081I|1|0.06|ENSG00000185567|chr14:104949208-104949208|C/T|missense_variant	AHNAK2|p.M2081I|1|0.06|ENSG00000185567|chr14:104949208-104949208|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.3280639648438	2	572.325742	1142.63693	3.382	0.0019356	0.56175	0.0003215	3.9437	0.0022571	572.3260582531693	18.296	0.31546	18.296	18.19	18.506	0					18	6	4	0	0	0	0.52275	1	5465	5465		42.864	42.864	1	3416100			27294	101	18460	18526	27661	27661		7			0.07131798465252359
MPSQGSMVF	9	Unmodified	_MPSQGSMVF_					0	0	0		LGI1|p.R474Q|1|0.13|ENSG00000108231|chr10:93797550-93797550|G/A|missense_variant	LGI1|p.R474Q|1|0.13|ENSG00000108231|chr10:93797550-93797550|G/A|missense_variant	LGI1|p.R474Q|1|0.13|ENSG00000108231|chr10:93797550-93797550|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2190856933594	2	492.219888	982.425224	-0.073833	-3.6342E-05	-1.4401	-0.00070885	-1.5139	-0.00074519	492.2192665248325	33.087	0.19833	33.087	33.001	33.199	0					16	9	2	0	0	0	0.39215	1	10719	10719		42.396	1.618	1	100110			27295	11316	18461	18527	27662	27662					-0.06669196497318808
MPSRELASM	9	Unmodified	_MPSRELASM_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2438659667969	2	511.243895	1020.47324	1.4026	0.00071707	-2.6593	-0.0013595	-1.2566	-0.00064245	511.2433612037001	30.577	0.65291	30.577	30.325	30.978	0					41	13	5	0	0	0	0.24334	1	11371	11371		56.434	12.317	1	752860			27296	5675	18462	18528	27663	27663					-0.03618122577279337
MPSRQCVGF	9	Carbamidomethyl (C)	_MPSRQC(Carbamidomethyl (C))VGF_	MPSRQC(1)VGF		MPSRQC(82)VGF		0	1	0		ENST00000013125.8_1_14:50892643-50892694:-|nuORF	ENST00000013125.8_1_14:50892643-50892694:-|nuORF	ENST00000013125.8_1_14:50892643-50892694:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.248046875	2	541.249511	1080.48447	2.0681	0.0011194	-2.8825	-0.0015601	-0.81435	-0.00044076	541.2484664627644	39.34	0.33168	39.34	39.243	39.575	0					12	7	2	0	0	0	0.087582	1	15552	15552		82.305	13.82	1	199370			27297	8140	18463	18529	27664	27664	355				-0.0525530048314522
MPSSAVRVL	9	Unmodified	_MPSSAVRVL_					0	0	0		SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant;ENSG00000144451|ENST00000331683|SPAG16;ENST00000413312.5_1_2:214149168-214161993:+|nuORF;SPAG16|p.N166Rfs*6|1|0.15|ENSG00000144451|chr2:213317316-213317317|-/GGGTTTATATC|frameshift_variant;nc|ENSG00000144451|Q8N0X2-4|SPAG16;SPAG16|p.N207Tfs*3|1|0.37|ENSG00000144451|chr2:213340240-213340240|A/-|frameshift_variant;nc|ENSG00000144451|Q8N0X2-5|SPAG16	SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant	SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.269775390625	2	480.27077	958.526987	-0.11044	-5.3041E-05	-0.80072	-0.00038456	-0.91116	-0.00043761	480.2706807664028	33.777	0.37367	33.777	33.654	34.028	0					20	9	3	0	0	0	0.095583	1	12925	12925		80.455	16.247	1	135480			27298	4618	18464	18530	27665	27665					0.04606417916738792
MPSSAVRVL	9	Unmodified	_MPSSAVRVL_					0	0	0		SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant;ENSG00000144451|ENST00000331683|SPAG16;ENST00000413312.5_1_2:214149168-214161993:+|nuORF;SPAG16|p.N166Rfs*6|1|0.15|ENSG00000144451|chr2:213317316-213317317|-/GGGTTTATATC|frameshift_variant;nc|ENSG00000144451|Q8N0X2-4|SPAG16;SPAG16|p.N207Tfs*3|1|0.37|ENSG00000144451|chr2:213340240-213340240|A/-|frameshift_variant;nc|ENSG00000144451|Q8N0X2-5|SPAG16	SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant	SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2705993652344	2	480.27077	958.526987	-0.6465	-0.0003105	0.1696	8.1455E-05	-0.4769	-0.00022904	480.27094860888513	33.708	0.15785	33.708	33.6	33.757	0					6	3	2	0	0	0	0.10915	1	12852	12852		77.318	24.381	1	198850			27299	4618	18464	18530	27666	27666					0.04606417916738792
MPSSDTTVTF	10	Unmodified	_MPSSDTTVTF_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2442016601562	2	543.244615	1084.47468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.777	1	41.777	41.277	42.277	0								0	0	0	0.32041	1	16636	16636		47.657	5.2612	1				27300	1892	18465	18531	27667	27667					-0.06418210007564085
MPSSSHGSM	9	Unmodified	_MPSSSHGSM_					0	0	0		nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18;SS18|p.M150I|1|0.4|ENSG00000141380|chr18:26052781-26052781|C/A|missense_variant	nc|ENSG00000141380|Q15532-2|SS18	nc|ENSG00000141380|Q15532-2|SS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.68341064453125	2	460.68367	919.352787	-0.1519	-6.998E-05	-1.5707	-0.00072359	-1.7226	-0.00079357	460.68341207995	18.902	0.21625	18.902	18.834	19.05	0					10	4	3	0	0	0	0.062676	1	5892	5892		90.777	42.861	1	133100			27301	4440	18466	18532	27668	27668					-0.11011530570885952
MPTAYNTDY	9	Unmodified	_MPTAYNTDY_					0	0	0		nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D;ENST00000561125.2_1_15:100246921-100252973:+|nuORF;nc|ENSG00000068305|Q02078-8|MEF2A;nc|ENSG00000068305|Q02078-7|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078|MEF2A	nc|ENSG00000116604|Q14814-6|MEF2D	nc|ENSG00000116604|Q14814-6|MEF2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2237548828125	2	538.223682	1074.43281	1.359	0.00073145	-1.0541	-0.00056735	0.30488	0.0001641	538.2229886278869	36.616	0.124	36.616	36.539	36.663	0					5	3	2	0	0	0	0.44593	1	14265	14265		37.812	7.3079	1	104900			27302	2990	18467	18533	27669	27669					-0.10142765696059541
MPTGGGKSL	9	Unmodified	_MPTGGGKSL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL;BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant;BLM|p.G1220Pfs*25|1|0.09|ENSG00000197299|chr15:90804264-90804265|-/ACCTTTA|frameshift_variant;ENSG00000197299|ENST00000355112|BLM	ENSG00000004700|ENST00000444129|RECQL;BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.220703125	2	424.220746	846.426938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.425	1	22.425	21.925	22.925	0								0	0	0	0.22075	1	7283	7283		47.96	2.0076	1				27303	303;942	18468	18534	27670	27670					-0.0024181941707865917
MPTKTIEVL	9	Unmodified	_MPTKTIEVL_					0	0	0		ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48;ENSG00000175581|ENST00000310614|MRPL48	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2942504882812	2	516.293911	1030.57327	1.4683	0.00075805	-1.2161	-0.00062787	0.25215	0.00013018	516.2935435546465	37.286	0.38004	37.286	37.155	37.535	0					30	11	4	0	0	0	0.16806	1	14563	14563		65.465	16.024	1	517600			27304	6567	18469	18535	27671	27671					0.05920438028169883
MPTKTIEVL	9	Unmodified	_MPTKTIEVL_					0	0	0		ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48;ENSG00000175581|ENST00000310614|MRPL48	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2939453125	2	516.293911	1030.57327	1.527	0.00078839	-1.3368	-0.00069018	0.19022	9.8209E-05	516.2933031840249	37.26	0.65322	37.26	37.054	37.708	0					26	13	3	0	0	0	0.22837	1	14516	14516		58.23	15.834	1	980540			27305	6567	18469	18535	27672	27672					0.05920438028169883
MPTQEVQEL	9	Unmodified	_MPTQEVQEL_					0	0	0		ENSG00000109046|ENST00000262394|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1	ENSG00000109046|ENST00000262394|WSB1	ENSG00000109046|ENST00000262394|WSB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7606811523438	2	537.760432	1073.50631	1.3348	0.00071779	-1.289	-0.00069318	0.045773	2.4615E-05	537.7598524988264	38.63	0.12572	38.63	38.541	38.667	0					7	4	2	0	0	0	0.24169	1	15161	15161		56.632	7.1907	1	42007			27306	2561	18470	18536	27673	27673					-0.027502172536060243
MPTTERVTL	9	Unmodified	_MPTTERVTL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-4|CASP1;CARD17-CASP1|3|fusion;nc|ENSG00000137752|P29466-3|CASP1;CARD17-CASP1|4|fusion;nc|ENSG00000137752|P29466-5|CASP1;CARD17-CASP1|5|fusion	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2799072265625	2	524.278792	1046.54303	1.014	0.00053163	1.2337	0.00064683	2.2478	0.0011785	524.2793000196262	33.209	0.21769	33.209	33.109	33.326	0					9	5	2	0	0	0	0.16806	1	12698	12698		65.465	4.4934	1	126960			27307	373	18471	18537	27674	27674					0.021620793629836044
MPTTGINEY	9	Unmodified	_MPTTGINEY_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2340698242188	2	513.23405	1024.45355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.206	1	37.206	36.706	37.706	0								0	0	0	0.27939	1	14525	14525		39.253	3.6345	1				27308	1317	18472	18538	27675	27675					-0.057701753164110414
MPTVHYEF	8	Unmodified	_MPTVHYEF_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2330322265625	2	512.233853	1022.45315	1.2467	0.00063858	-1.0894	-0.00055801	0.15728	8.0566E-05	512.2332632423534	40.741	0.26915	40.741	40.54	40.809	0					20	11	2	0	0	0	0.7126	1	16028	16028		31.955	2.7848	1	104680			27309	4086	18473	18539	27676	27676					-0.05717550245606162
MPTVHYEF	8	Unmodified	_MPTVHYEF_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2340698242188	2	512.233853	1022.45315	1.4213	0.00072804	-1.0078	-0.00051624	0.41349	0.0002118	512.2333031045958	40.709	0.45357	40.709	40.439	40.892	0					22	8	3	0	0	0	0.44433	1	16136	16136		65.803	23.407	1	544700			27310	4086	18473	18539	27677	27677					-0.05717550245606162
MPVAEGKSV	9	Unmodified	_MPVAEGKSV_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20;ENST00000467535.5_1_6:41880803-41888587:-|nuORF	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2418518066406	2	459.241678	916.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.735	1	23.735	23.235	24.235	0								0	0	0	0.018912	1	7899	7899		101.25	29.957	1				27311	3390	18474	18540	27678	27678					0.0072273627146159924
MPVALLRR	8	Unmodified	_MPVALLRR_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2973327636719	2	478.297122	954.579691	-0.28151	-0.00013465	1.2324	0.00058944	0.95085	0.00045479	478.2981454727258	39.866	0.24812	39.866	39.738	39.986	0					18	9	3	0	0	0	0.61433	1	15182	15182		46.766	9.738	1	197170			27312	6599	18475	18541	27679	27679					0.10058420770212706
MPVAMALLR	9	Unmodified	_MPVAMALLR_					0	0	0		TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;ENSG00000064313|ENST00000378164|TAF2	TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2848205566406	2	501.285366	1000.55618	-2.1071	-0.0010563	1.5706	0.00078733	-0.53653	-0.00026896	501.28599724693845	25.081	0.26606	25.081	24.986	25.252	0					16	6	4	0	0	0	0.18879	1	7907	7907		62.978	62.978	1	714850			27313	1346	18476	18542	27680	27680					0.05592238941369487
MPVAQPSSSY	10	Unmodified	_MPVAQPSSSY_					0	0	0			REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7454223632812	2	533.747324	1065.4801	-0.46159	-0.00024637	-1.7143	-0.00091499	-2.1759	-0.0011614	533.7463259679337	32.721	0.53958	32.721	32.317	32.857	0					41	21	2	0	0	0	0.62235	1	10840	10840		31.53	4.8369	1	140610	+		27314	21066	18477	18543	27681	27681					-0.050024864250644896
MPVAQQPVY	9	Unmodified	_MPVAQQPVY_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD;nc|ENSG00000164120|P15428-2|HPGD;ENST00000512410.1_1_4:175416602-175443578:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7630004882812	2	516.762778	1031.511	1.2661	0.00065429	-1.1289	-0.0005834	0.13719	7.0895E-05	516.7623349378289	36.113	0.44961	36.113	35.98	36.43	0					27	12	3	0	0	0	0.35045	1	13597	13597		45.952	13.997	1	422190			27315	5659	18478	18544	27682	27682					-0.003492883201715813
MPVAQQPVY	9	Unmodified	_MPVAQQPVY_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD;nc|ENSG00000164120|P15428-2|HPGD;ENST00000512410.1_1_4:175416602-175443578:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7631225585938	2	516.762778	1031.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.902	1	35.902	35.402	36.402	0								0	0	0	0.27166	1	12819	12819		40.573	1.5511	1				27316	5659	18478	18544	27683	27683					-0.003492883201715813
MPVAQQPVY	9	Unmodified	_MPVAQQPVY_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD;nc|ENSG00000164120|P15428-2|HPGD;ENST00000512410.1_1_4:175416602-175443578:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7623291015625	2	516.762778	1031.511	0.20573	0.00010631	-0.31588	-0.00016324	-0.11016	-5.6925E-05	516.7627644002503	36.09	0.4155	36.09	35.881	36.297	0					24	8	4	0	0	0	0.23186	1	13978	13978		57.811	3.0466	1	447650			27317	5659	18478	18544	27684	27684					-0.003492883201715813
MPVASSEASTL	11	Unmodified	_MPVASSEASTL_					0	0	0		MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17;MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7658081054688	2	546.765714	1091.51688	1.7994	0.00098382	0.30764	0.00016821	2.107	0.001152	546.7658540075128	36.361	0.32866	36.361	36.257	36.586	0					20	9	3	0	0	0	0.028843	1	13690	13690		115.49	41.239	1	219380			27318	6191	18479	18545	27685	27685					-0.025222345991551265
MPVASSEASTL	11	Unmodified	_MPVASSEASTL_					0	0	0		MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17;MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7672119140625	2	546.765714	1091.51688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.157	1	36.157	35.657	36.657	0								0	0	0	0.068771	1	12248	12248		82.75	36.778	1				27319	6191	18479	18545	27686	27686					-0.025222345991551265
MPVASSEASTL	11	Unmodified	_MPVASSEASTL_					0	0	0		MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17;MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.765625	2	546.765714	1091.51688	0.7916	0.00043282	0.31946	0.00017467	1.1111	0.00060749	546.766005948565	36.405	0.57397	36.405	36.214	36.788	0					32	16	3	0	0	0	0.0523	1	14133	14133		104.06	47.336	1	390150			27320	6191	18479	18545	27687	27687					-0.025222345991551265
MPVDPNKPT	9	Unmodified	_MPVDPNKPT_					0	0	0		ING5|p.E185K|1|0.21|ENSG00000168395|chr2:241723009-241723009|G/A|missense_variant	ING5|p.E185K|1|0.21|ENSG00000168395|chr2:241723009-241723009|G/A|missense_variant	ING5|p.E185K|1|0.21|ENSG00000168395|chr2:241723009-241723009|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7527160644531	2	499.75241	997.490267	-0.69657	-0.00034811	0.5785	0.00028911	-0.11807	-5.9006E-05	499.75268157461466	36.333	0.31244	36.333	36.183	36.496	0					14	6	3	0	0	0	0.18605	1	14101	14101		63.306	0	1	238420			27321	11223	18480	18546	27688	27688					-0.008578786998327814
MPVGMTHGL	9	Unmodified	_MPVGMTHGL_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7301330566406	2	471.730423	941.446293	0.19506	9.2014E-05	-1.5195	-0.00071681	-1.3245	-0.0006248	471.72998935417627	34.06	0.38655	34.06	33.92	34.306	0					24	10	3	0	0	0	0.1236	1	12638	12638		73.975	24.533	1	344640			27322	1871	18481	18547	27689	27689					-0.026771863978297006
MPVGMTHGL	9	Unmodified	_MPVGMTHGL_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7303771972656	2	471.730423	941.446293	0.58895	0.00027783	-1.3583	-0.00064073	-0.76931	-0.00036291	471.7298187943739	34.053	0.43837	34.053	33.906	34.345	0					20	10	3	0	0	0	0.18605	1	13104	13104		63.306	26.278	1	447930			27323	1871	18481	18547	27690	27690					-0.026771863978297006
MPVGMTHGL	9	Unmodified	_MPVGMTHGL_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7303771972656	2	471.730423	941.446293	-0.56665	-0.00026731	0.21948	0.00010353	-0.34717	-0.00016377	471.73050515655837	33.853	0.28658	33.853	33.712	33.999	0					12	8	2	0	0	0	0.35045	1	11901	11901		45.952	5.1738	1	93579			27324	1871	18481	18547	27691	27691					-0.026771863978297006
MPVGMTHGL	9	Unmodified	_MPVGMTHGL_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7298889160156	2	471.730423	941.446293	-0.56036	-0.00026434	-0.38459	-0.00018142	-0.94495	-0.00044576	471.7305363810738	33.979	0.40253	33.979	33.859	34.261	0					25	8	4	0	0	0	0.18605	1	12955	12955		63.306	16.54	1	624040			27325	1871	18481	18547	27692	27692					-0.026771863978297006
MPVGMTHGL	9	Unmodified	_MPVGMTHGL_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7304992675781	2	471.730423	941.446293	0.59141	0.00027898	-1.3225	-0.00062385	-0.73107	-0.00034487	471.7299464588839	33.983	0.55077	33.983	33.842	34.393	0					23	11	3	0	0	0	0.1236	1	12994	12994		73.975	21.676	1	666980			27326	1871	18481	18547	27693	27693					-0.026771863978297006
MPVNTNQNF	9	Unmodified	_MPVNTNQNF_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7461547851562	2	532.745116	1063.47568	1.0671	0.00056851	0.45789	0.00024394	1.525	0.00081244	532.7453658732622	34.801	0.46516	34.801	34.657	35.123	0					27	13	3	0	0	0	0.098791	1	13424	13424		79.713	33.761	1	121100			27327	4047	18482	18548	27694	27694					-0.053519508479894284
MPVNTNQNF	9	Unmodified	_MPVNTNQNF_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7455444335938	2	532.745116	1063.47568	1.9924	0.0010614	-0.62429	-0.00033259	1.3681	0.00072885	532.7446661366893	34.631	0.30108	34.631	34.47	34.771	0					12	8	2	0	0	0	0.42902	1	12247	12247		39.253	0	1	62725			27328	4047	18482	18548	27695	27695					-0.053519508479894284
MPVNTNQNF	9	Unmodified	_MPVNTNQNF_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7459106445312	2	532.745116	1063.47568	0.71771	0.00038235	0.18142	9.665E-05	0.89913	0.000479	532.7452890228817	34.813	0.50814	34.813	34.589	35.097	0					28	10	3	0	0	0	0.087861	1	13311	13311		82.241	23.459	1	580990			27329	4047	18482	18548	27696	27696					-0.053519508479894284
MPVRAADKL	9	Unmodified	_MPVRAADKL_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF;SNW1|p.T261Ffs*14|1|0.06|ENSG00000100603|chr14:77732595-77732596|-/TACTTTTAAA|frameshift_variant;SNW1|p.M312Nfs*10|1|0.11|ENSG00000100603|chr14:77731086-77731087|-/T|frameshift_variant	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.78338623046875	2	500.784044	999.553536	-0.046734	-2.3403E-05	-1.2305	-0.00061623	-1.2773	-0.00063963	500.78340205332654	23.903	0.11114	23.903	23.842	23.954	0					7	4	2	0	0	0	0.17062	1	6976	6976		49.536	14.335	1	112190			27330	2048	18483	18549	27697	27697					0.05374106808051238
MPVRAADKL	9	Unmodified	_MPVRAADKL_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF;SNW1|p.T261Ffs*14|1|0.06|ENSG00000100603|chr14:77732595-77732596|-/TACTTTTAAA|frameshift_variant;SNW1|p.M312Nfs*10|1|0.11|ENSG00000100603|chr14:77731086-77731087|-/T|frameshift_variant	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.78387451171875	2	500.784044	999.553536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.232	1	24.232	23.732	24.732	0								0	0	0	0.18191	1	8129	8129		46.457	9.2977	1				27331	2048	18483	18549	27698	27698					0.05374106808051238
MPVRDVRL	8	Unmodified	_MPVRDVRL_					0	0	0		ENST00000277541.6_1_9:139389036-139389225:-|nuORF	ENST00000277541.6_1_9:139389036-139389225:-|nuORF	ENST00000277541.6_1_9:139389036-139389225:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2857666015625	2	493.284211	984.55387	0.62141	0.00030653	1.8411	0.0009082	2.4625	0.0012147	493.28522441382535	36.603	0.58931	36.603	36.35	36.939	0					24	17	2	0	0	0	0.67394	1	14369	14369		37.159	2.9866	1	192170			27332	8399	18484	18550	27699	27699					0.060975265279239466
MPWQCGCQR	9	Unmodified	_MPWQCGCQR_					0	0	0		ENST00000530758.1_1_3:10168359-10168521:+|nuORF	ENST00000530758.1_1_3:10168359-10168521:+|nuORF	ENST00000530758.1_1_3:10168359-10168521:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.727783203125	2	554.727889	1107.44122	1.7122	0.00094983	-1.1334	-0.00062871	0.57888	0.00032112	554.7274236865677	31.919	0.25768	31.919	31.747	32.005	0					11	6	2	0	0	0	0.57706	1	11658	11658		24.203	0	1	60796			27333	10427	18485	18551	27700	27700					-0.10819813532089029
MPYLKACLK	9	Unmodified	_MPYLKACLK_					0	0	0		nc|ENSG00000019186|Q07973-3|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1;ENSG00000019186|ENST00000216862|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7929077148438	2	533.793023	1065.57149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.623	1	34.623	34.123	35.123	0								0	0	0	0.23459	1	12272	12272		45.952	8.1404	1				27334	1094	18486	18552	27701	27701					0.041331057385150416
MPYSHPSSY	9	Unmodified	_MPYSHPSSY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7283935546875	2	534.726392	1067.43823	1.1781	0.00062996	-0.12526	-6.6979E-05	1.0528	0.00056298	534.7265890905051	26.822	0.087717	26.822	26.772	26.86	0					6	3	2	0	0	0	0.021468	1	8194	8194		119.56	45.582	1	105920			27335	5668	18487	18553	27702	27702					-0.09279042113598734
MPYSHPSSY	9	Unmodified	_MPYSHPSSY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7269897460938	2	534.726392	1067.43823	2.2438	0.0011998	-1.3221	-0.00070696	0.92169	0.00049285	534.7257382947533	27.013	0.25313	27.013	26.927	27.18	0					15	6	3	0	0	0	0.011305	1	9399	9399		138.24	74.936	1	626460			27336	5668	18487	18553	27703	27703					-0.09279042113598734
MPYSHPSSY	9	Unmodified	_MPYSHPSSY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7276000976562	2	534.726392	1067.43823	-0.58845	-0.00031466	1.4873	0.00079528	0.89882	0.00048062	534.7274920553047	26.833	0.11021	26.833	26.734	26.844	0					7	4	2	0	0	0	0.14603	1	8473	8473		68.787	38.283	1	82177			27337	5668	18487	18553	27704	27704					-0.09279042113598734
MPYSHPSSY	9	Unmodified	_MPYSHPSSY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7267456054688	2	534.726392	1067.43823	1.7871	0.00095559	-1.4844	-0.00079376	0.30265	0.00016183	534.7257794360656	27.063	0.2083	27.063	26.961	27.169	0					10	4	3	0	0	0	0.015835	1	9777	9777		128.86	63.058	1	665770			27338	5668	18487	18553	27705	27705					-0.09279042113598734
MPYSHPSSY	9	Unmodified	_MPYSHPSSY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7269897460938	2	534.726392	1067.43823	1.0949	0.00058545	0.32346	0.00017296	1.4183	0.00075841	534.7262638889903	26.871	0.17104	26.871	26.776	26.947	0					9	4	3	0	0	0	0.14603	1	8723	8723		68.787	28.009	1	137600			27339	5668	18487	18553	27706	27706					-0.09279042113598734
MPYSHPSSY	9	Unmodified	_MPYSHPSSY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7271728515625	2	534.726392	1067.43823	1.8537	0.00099123	-0.7687	-0.00041105	1.085	0.00058018	534.7259471906551	27.02	0.26912	27.02	26.885	27.154	0					11	5	3	0	0	0	0.0090636	1	9623	9623		143.02	69.045	1	551950			27340	5668	18487	18553	27707	27707					-0.09279042113598734
MQDQPQTV	8	Unmodified	_MQDQPQTV_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7187194824219	2	473.718567	945.422581	-0.12162	-5.7613E-05	-0.60874	-0.00028837	-0.73036	-0.00034598	473.71808770432875	35.734	0.3316	35.734	35.613	35.944	0					14	9	2	0	0	0	0.59714	1	13874	13874		49.536	8.7579	1	54469	+		27341	15558	18488	18554	27708	27708					-0.052313286306457485
MQFCNKVY	8	Unmodified	_MQFCNKVY_					0	0	0			REV__ENST00000423757.1_1_7:149031855-149031933:+|nuORF	REV__ENST00000423757.1_1_7:149031855-149031933:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7725830078125	2	516.735706	1031.45686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.373	1	34.373	33.873	34.873	0								0	0	0	1.7419	1	11590	11590		42.474	1.6963	1		+		27342	19101	18489	18555	27709	27709					-0.057612037433955265
MQFFNYVM	8	2 Oxidation (M)	_M(Oxidation (M))QFFNYVM(Oxidation (M))_		M(1)QFFNYVM(1)		M(68)QFFNYVM(68)	0	0	2		nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.2339477539062	2	556.232996	1110.45144	1.8099	0.0010067	-0.56825	-0.00031608	1.2416	0.00069064	556.2328828082593	38.701	0.11582	38.701	38.648	38.764	0					10	5	2	0	0	0	0.41952	1	14709	14709		68.485	13.708	1	83402			27343	1864	18490	18556	27710	27710		85;86			-0.09936927325838951
MQGEGKFIF	9	Unmodified	_MQGEGKFIF_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7616577148438	2	528.762778	1055.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.62	1	34.62	34.12	35.12	0								0	0	0	0.24724	1	11327	11327		44.117	6.3053	1				27344	8065	18491	18557	27711	27711					-0.014532883201809454
MQGGILFVY	9	Unmodified	_MQGGILFVY_					0	0	0		nc|ENSG00000133805|Q01432-6|AMPD3;nc|ENSG00000133805|Q01432-3|AMPD3;ENSG00000133805|ENST00000396553|AMPD3;nc|ENSG00000133805|Q01432-5|AMPD3;nc|ENSG00000133805|Q01432-4|AMPD3	nc|ENSG00000133805|Q01432-6|AMPD3	nc|ENSG00000133805|Q01432-6|AMPD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.267822265625	2	514.267696	1026.52084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.075	1	29.075	28.575	29.575	0								0	0	0	0.30835	1	9434	9434		33.516	3.0119	1				27345	3871	18492	18558	27712	27712					0.008638996852141645
MQGPWVLLL	9	Oxidation (M)	_M(Oxidation (M))QGPWVLLL_		M(1)QGPWVLLL		M(52)QGPWVLLL	0	0	1		ENSG00000163295|ENST00000295463|ALPI;ENSG00000163286|ENST00000295453|ALPG	ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.79833984375	2	536.79662	1071.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.897	1	37.897	37.397	38.397	0								0	0	0	0.19085	1	14847	14847		52.299	6.3472	1				27346	5542	18493	18559	27713	27713		222			0.04576161610634699
MQIKSGKQ	8	Unmodified	_MQIKSGKQ_					0	0	0			REV__nc|ENSG00000114248|Q6UY01-3|LRRC31	REV__nc|ENSG00000114248|Q6UY01-3|LRRC31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7580261230469	2	460.25512	918.495686	-0.45367	-0.0002088	1.0432	0.00048014	0.58953	0.00027134	460.2549036576024	38.918	0.30373	38.918	38.746	39.049	0					13	6	3	0	0	0	0.68432	1	15387	15387		35.618	3.6634	1	80573	+		27347	14068	18494	18560	27714	27714					0.03317844882644749
MQILWINI	8	Unmodified	_MQILWINI_					0	0	0		ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	ENSG00000064270|ENST00000262429|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.79296875	2	515.791338	1029.56812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.349	1	39.349	38.849	39.849	0								0	0	0	1.7419	1	15472	15472		45.952	1.4209	1				27348	1345	18495	18561	27715	27715					0.054521789561931655
MQISMKRV	8	Unmodified	_MQISMKRV_					0	0	0			REV__ENST00000335255.9_2_17:80561515-80561617:+|nuORF	REV__ENST00000335255.9_2_17:80561515-80561617:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7725830078125	2	496.772622	991.530692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.466	1	15.466	14.966	15.966	0								0	0	0	1.7419	1	3477	3477		24.203	0	1		+		27349	18408	18496	18562	27716	27716					0.034587644189400635
MQKPAFFEV	9	Unmodified	_MQKPAFFEV_					0	0	0		ENST00000409467.5_1_7:33069288-33075596:-|nuORF	ENST00000409467.5_1_7:33069288-33075596:-|nuORF	ENST00000409467.5_1_7:33069288-33075596:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7802124023438	2	548.778428	1095.5423	3.8018	0.0020863	-2.566	-0.0014082	1.2358	0.00067817	548.7769605616343	29.178	0.16448	29.178	29.076	29.241	0					6	3	2	0	0	0	0.24095	1	10673	10673		56.721	1.9987	1	941460			27350	9300	18497	18563	27717	27717					-0.0016471528606416541
MQKYDFSFY	9	Unmodified	_MQKYDFSFY_					0	0	0		SLC16A14|p.T467M|1|0.52|ENSG00000163053|chr2:230037513-230037513|G/A|missense_variant	SLC16A14|p.T467M|1|0.52|ENSG00000163053|chr2:230037513-230037513|G/A|missense_variant	SLC16A14|p.T467M|1|0.52|ENSG00000163053|chr2:230037513-230037513|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	614.7702026367188	2	614.7708	1227.52705	-0.7972	-0.00049009	0.17415	0.00010706	-0.62305	-0.00038304	614.7709179846846	30.546	0.74235	30.546	29.961	30.703	0					35	18	3	0	0	0	0.39215	1	11043	11043		42.396	8.2236	1	184980			27351	22401	18498	18564	27718	27718					-0.07761626873912064
MQLCPCSSK	9	Unmodified	_MQLCPCSSK_					0	0	0			REV__L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|9|1|sense	REV__L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|9|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7201232910156	2	498.719198	995.423843	-0.68217	-0.00034021	2.3143	0.0011542	1.6321	0.00081395	498.720245762901	18.434	0.16663	18.434	18.327	18.493	0					5	3	2	0	0	0	0.60749	1	5672	5672		20.947	0	1	234640	+		27352	20817	18499	18565	27719	27719					-0.07405153857746427
MQLFMRAGR	9	Unmodified	_MQLFMRAGR_					0	0	0		ENST00000608644.1_1_22:46449264-46449396:+|nuORF	ENST00000608644.1_1_22:46449264-46449396:+|nuORF	ENST00000608644.1_1_22:46449264-46449396:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.2942504882812	2	555.288971	1108.56339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.959	1	27.959	27.459	28.459	0								0	0	0	0.29774	1	8965	8965		35.618	2.8059	1				27353	11098	18500	18566	27720	27720					0.013449715417891639
MQLGVHYSK	9	Unmodified	_MQLGVHYSK_					0	0	0		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.7745971679688	2	531.773677	1061.5328	0.37028	0.00019691	-0.0302	-1.606E-05	0.34008	0.00018085	531.7738672647297	25.522	0.2646	25.522	25.444	25.708	0					27	9	4	0	0	0	0.076532	1	7667	7667		85.862	41.745	1	1098200			27354	9485	18501	18567	27721	27721					0.004495164283980557
MQLGVHYSK	9	Unmodified	_MQLGVHYSK_					0	0	0		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7742919921875	2	531.773677	1061.5328	0.12192	6.4834E-05	0.38165	0.00020295	0.50357	0.00026778	531.7740208613129	25.871	0.55508	25.871	25.692	26.247	0					22	11	3	0	0	0	0.013878	1	8838	8838		132.76	34.128	1	974350			27355	9485	18501	18567	27722	27722					0.004495164283980557
MQLGVHYSK	9	Unmodified	_MQLGVHYSK_					0	0	0		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7737426757812	2	531.773677	1061.5328	0.31259	0.00016623	-0.037024	-1.9689E-05	0.27557	0.00014654	531.7737762579305	25.56	0.29527	25.56	25.465	25.76	0					20	9	4	0	0	0	0.032383	1	7954	7954		106.68	45.711	1	751670			27356	9485	18501	18567	27723	27723					0.004495164283980557
MQLGVHYSK	9	Unmodified	_MQLGVHYSK_					0	0	0		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7738037109375	2	531.773677	1061.5328	0.2883	0.00015331	0.15551	8.2698E-05	0.44381	0.00023601	531.7737481773496	25.742	0.63891	25.742	25.67	26.309	0					21	11	3	0	0	0	0.015496	1	9177	9177		129.42	38.645	1	451210			27357	9485	18501	18567	27724	27724					0.004495164283980557
MQLGVHYSK	9	Unmodified	_MQLGVHYSK_					0	0	0		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2782592773438	2	531.773677	1061.5328	-1.2538	-0.00066673	2.1115	0.0011228	0.85767	0.00045609	531.7751619342195	25.635	0.23202	25.635	25.503	25.735	0					16	6	4	0	0	0	0.13726	2	8154	8154;8169		70.816	30.244	1	800370			27358	9485	18501	18567	27725;27726	27725					0.004495164283980557
MQLGVHYSK	9	Unmodified	_MQLGVHYSK_					0	0	0		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7742309570312	2	531.773677	1061.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.715	1	25.715	25.215	26.215	0								0	0	0	0.010168	1	9038	9038		109.48	27.238	1				27359	9485	18501	18567	27727	27727					0.004495164283980557
MQLGVHYSK	9	Oxidation (M)	_M(Oxidation (M))QLGVHYSK_		M(1)QLGVHYSK		M(76)QLGVHYSK	0	0	1		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7719116210938	2	539.771134	1077.52771	0.25926	0.00013994	2.3714	0.00128	2.6306	0.0014199	539.7719178547337	21.513	0.27669	21.513	21.461	21.738	0					9	6	2	0	0	0	0.11411	1	6860	6860		76.17	17.388	1	549080			27360	9485	18501	18568	27728	27728		381			-0.007947874342335126
MQLGVHYSK	9	Oxidation (M)	_M(Oxidation (M))QLGVHYSK_		M(1)QLGVHYSK		M(110)QLGVHYSK	0	0	1		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7716674804688	2	539.771134	1077.52771	0.30448	0.00016435	0.56804	0.00030661	0.87252	0.00047096	539.7714181103916	21.398	0.2185	21.398	21.29	21.509	0					6	4	2	0	0	0	0.032383	1	7101	7101		106.68	51.907	1	396250			27361	9485	18501	18568	27729	27729		381			-0.007947874342335126
MQLLEDNYW	9	Unmodified	_MQLLEDNYW_					0	0	0			REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	606.2733764648438	2	606.273706	1210.53286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.777	1	18.777	18.277	19.277	0								0	0	0	0.39362	1	4968	4968		3.1592	3.1592	1		+		27362	12765	18502	18569	27730	27730					-0.06398528362274192
MQLPPFDM	8	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))QLPPFDM(Oxidation (M))_		M(1)QLPPFDM(1)		M(56)QLPPFDM(56)	1	0	2		NANOS2|p.L50Wfs*32|1|0.08|ENSG00000188425|chr19:45914547-45914547|C/-|frameshift_variant;ENSG00000188425|ENST00000341294|NANOS2	NANOS2|p.L50Wfs*32|1|0.08|ENSG00000188425|chr19:45914547-45914547|C/-|frameshift_variant	NANOS2|p.L50Wfs*32|1|0.08|ENSG00000188425|chr19:45914547-45914547|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.726318359375	2	526.725003	1051.43545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.704	1	37.704	37.204	38.204	0								0	0	0	1.7419	1	13489	13489		55.504	13.108	1				27363	7251	18503	18570	27731	27731		291;292			-0.08820633562754665
MQLPRPRGP	9	Unmodified	_MQLPRPRGP_					0	0	0			REV__ENST00000455547.5_1_22:36922907-36925191:-|nuORF	REV__ENST00000455547.5_1_22:36922907-36925191:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.2001037597656	3	351.199166	1050.57567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.191	1	47.191	46.691	47.691	0								0	0	0	0.36609	1	18858	18858		20.947	6.8098	1		+		27364	19341	18504	18571	27732	27732					0.05240331276490906
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.84454345703125	3	363.844171	1088.51068	0.46457	0.00016903	0.38195	0.00013897	0.84652	0.000308	363.84433959496306	20.137	0.13426	20.137	20.069	20.203	0					6	4	2	0	0	0	0.04067	1	5348	5348		125.71	63.606	1	311460		+	27365	11643	18505	18572	27733	27733					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2643432617188	2	545.262619	1088.51068	1.1903	0.00064904	-0.73491	-0.00040072	0.45543	0.00024833	545.2626620530494	20.131	0.15643	20.131	20.058	20.214	0					15	5	4	0	0	0	0.029571	1	5331	5331		109.44	40.652	1	990140		+	27366	11643	18505	18572	27734	27734					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.84417724609375	3	363.844171	1088.51068	0.74108	0.00026964	-1.4573	-0.00053022	-0.71619	-0.00026058	363.84390416498695	20.485	0.32685	20.485	20.387	20.714	0					21	7	4	0	0	0	0.020674	1	6372	6372		136.99	65.112	1	6080600		+	27367	11643	18505	18572	27735	27735					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2634887695312	2	545.262619	1088.51068	0.39775	0.00021688	0.36758	0.00020043	0.76533	0.0004173	545.2633612635703	20.517	0.19143	20.517	20.373	20.564	0					16	4	5	0	0	0	0.0079272	2	6365	6365;6384		145.46	83.353	1	4477300		+	27368	11643	18505	18572	27736;27737	27736					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7655639648438	2	545.262619	1088.51068	-0.2269	-0.00012372	1.5558	0.00084832	1.3289	0.00072459	545.263969788397	20.183	0.13572	20.183	20.107	20.243	0					10	4	3	0	0	0	0.082776	1	5586	5586		83.647	19.44	1	326060		+	27369	11643	18505	18572	27738	27738					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.8440246582031	3	363.844171	1088.51068	0.2822	0.00010268	-1.2057	-0.0004387	-0.92353	-0.00033602	363.8439564211108	20.389	0.26609	20.389	20.28	20.546	0					16	5	4	0	0	0	0.032383	1	6608	6608		122.94	59.405	1	8462000		+	27370	11643	18505	18572	27739	27739					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2628784179688	2	545.262619	1088.51068	0.32968	0.00017976	0.47518	0.0002591	0.80485	0.00043886	545.2632846728533	20.404	0.16506	20.404	20.297	20.462	0					10	3	4	0	0	0	0.0088974	1	6595	6595		143.37	73.746	1	2039500		+	27371	11643	18505	18572	27740	27740					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.84417724609375	3	363.844171	1088.51068	0.38146	0.00013879	-0.64254	-0.00023379	-0.26108	-9.4993E-05	363.84407085649303	20.243	0.15512	20.243	20.141	20.296	0					8	3	3	0	0	0	0.16806	1	5664	5664		81.525	31.491	1	653400		+	27372	11643	18505	18572	27741	27741					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.263427734375	2	545.262619	1088.51068	-1.4976	-0.00081659	2.2972	0.0012526	0.79956	0.00043597	545.2643268054503	20.26	0.15241	20.26	20.158	20.31	0					7	3	3	0	0	0	0.0063888	1	5650	5650		152.06	66.701	1	573420		+	27373	11643	18505	18572	27742	27742					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.8442077636719	3	363.844171	1088.51068	-0.099422	-3.6174E-05	-0.44238	-0.00016096	-0.5418	-0.00019713	363.84426540505234	20.402	0.3147	20.402	20.294	20.609	0					21	6	5	0	0	0	0.095583	1	6483	6483		106.88	43.454	1	6476300		+	27374	11643	18505	18572	27743	27743					-0.030030313116867546
MQNMSIHTK	9	Unmodified	_MQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2633056640625	2	545.262619	1088.51068	3.7283	0.0020329	-2.8935	-0.0015777	0.83477	0.00045517	545.2613624138598	20.419	0.16634	20.419	20.311	20.477	0					9	3	3	0	0	0	0.010427	1	6469	6469		140.11	57.362	1	4050200		+	27375	11643	18505	18572	27744	27744					-0.030030313116867546
MQNMSIHTK	9	Oxidation (M)	_MQNM(Oxidation (M))SIHTK_		M(0.012)QNM(0.988)SIHTK		M(-19)QNM(19)SIHTK	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.1759948730469	3	369.17581	1104.5056	0.76771	0.00028342	-0.60683	-0.00022403	0.16088	5.9393E-05	369.17562310201583	15.494	0.1749	15.494	15.41	15.584	0					7	4	3	0	0	0	0.41958	1	4028	4028		40.058	8.5284	2	457110		+	27376	11643	18505	18573	27745	27745		454			-0.042473351742955856
MQNMSIHTK	9	Oxidation (M)	_MQNM(Oxidation (M))SIHTK_		MQNM(1)SIHTK		M(-78)QNM(78)SIHTK	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2606201171875	2	553.260076	1104.5056	0.039097	2.1631E-05	0.64798	0.0003585	0.68708	0.00038013	553.2606273244509	15.458	0.26838	15.458	15.4	15.669	0					7	5	2	0	0	0	0.010427	1	4245	4245		140.11	59.658	2	377630		+	27377	11643	18505	18573	27746	27746		454			-0.042473351742955856
MQPASVGLN	9	Unmodified	_MQPASVGLN_					0	0	0			REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.73077392578125	2	458.731477	915.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.464	1	40.464	39.964	40.964	0								0	0	0	0.14033	1	15946	15946		62.107	1.8135	1		+		27378	16802	18506	18574	27747	27747					-0.01270434388356989
MQPFAYYR	8	Unmodified	_MQPFAYYR_					0	0	0			REV__ENSG00000130005|ENST00000252288|GAMT	REV__ENSG00000130005|ENST00000252288|GAMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2538452148438	2	538.25512	1074.49569	0.81235	0.00043725	-3.6927	-0.0019876	-2.8803	-0.0015504	538.2530489483968	16.928	0.056215	16.928	16.903	16.959	0					4	2	2	0	0	0	0.7126	1	3949	3949		31.955	1.6371	1	63423	+		27379	14564	18507	18575	27748	27748					-0.03858155117382012
MQPHSEWEV	9	Unmodified	_MQPHSEWEV_					0	0	0		ENST00000532054.1_1_11:32605755-32605815:+|nuORF	ENST00000532054.1_1_11:32605755-32605815:+|nuORF	ENST00000532054.1_1_11:32605755-32605815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.5035705566406	3	381.502691	1141.48624	0.13383	5.1057E-05	1.897	0.00072371	2.0308	0.00077476	381.50362145759215	29.691	0.33297	29.691	29.6	29.933	0					19	8	4	0	0	0	0.47038	1	10621	10621		28.081	2.9555	1	937750			27380	10447	18508	18576	27749	27749					-0.07883968193550572
MQPLKGSLMD	10	Oxidation (M)	_M(Oxidation (M))QPLKGSLMD_		M(1)QPLKGSLMD		M(65)QPLKGSLM(-65)D	0	0	1		ENST00000321599.8_2_3:49762771-49762981:-|nuORF	ENST00000321599.8_2_3:49762771-49762981:-|nuORF	ENST00000321599.8_2_3:49762771-49762981:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.2798461914062	2	568.277934	1134.54132	0.68705	0.00039043	3.6592	0.0020795	4.3463	0.0024699	568.2801936115084	20.652	0.23336	20.652	20.558	20.792	0					9	5	3	0	0	0	0.31613	1	5834	5834		65.465	15.929	2	201630			27381	8618	18509	18577	27750	27750		344			-0.020572977172832907
MQQTKQQRE	9	Unmodified	_MQQTKQQRE_					0	0	0		nc|ENSG00000164830|Q8N573-6|OXR1;nc|ENSG00000164830|Q8N573-3|OXR1;OXR1|p.E529Kfs*13|1|0.09|ENSG00000164830|chr8:106707098-106707098|A/-|frameshift_variant;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1	nc|ENSG00000164830|Q8N573-6|OXR1	nc|ENSG00000164830|Q8N573-6|OXR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7947387695312	2	588.793129	1175.5717	1.4643	0.00086216	0.71325	0.00041996	2.1775	0.0012821	588.7937433772564	41.51	0.62259	41.51	41.317	41.94	0					85	26	6	0	0	0	0.44593	1	16407	16407		37.812	5.061	1	8767900			27382	5734	18510	18578	27751	27751					-0.009058030078904267
MQRPPPRPS	9	Unmodified	_MQRPPPRPS_					0	0	0		nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-4|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3	nc|ENSG00000256463|Q9BXA9-3|SALL3	nc|ENSG00000256463|Q9BXA9-3|SALL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2830200195312	2	533.284743	1064.55493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.724	1	29.724	29.224	30.224	0								0	0	0	0.34845	1	9408	9408		25.574	0.44807	1				27383	8027	18511	18579	27752	27752					0.025237408968223463
MQTTRKILM	9	Unmodified	_MQTTRKILM_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.3137817382812	2	561.312112	1120.60967	3.4702	0.0019479	-0.12582	-7.0622E-05	3.3444	0.0018773	561.3119162351551	24.699	0.6003	24.699	24.595	25.196	0					34	12	6	0	0	0	0.026538	1	8561	8561		84.916	0	1	10772000			27384	6711	18512	18580	27753	27753					0.054189916532095594
MQTTVHALVC	10	Unmodified	_MQTTVHALVC_					0	0	0			REV__tr|U7T0H3|U7T0H3_FUSNUEthanolamineammonia-lyaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutBPE=3SV=1	REV__tr|U7T0H3|U7T0H3_FUSNUEthanolamineammonia-lyaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.771728515625	2	551.772819	1101.53109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.781	1	19.781	19.281	20.281	0								0	0	0	0.4044	1	5183	5183		17.365	0	1		+		27385	22063	18513	18581	27754	27754					-0.015618606518728484
MQVNVKGCGNV	11	Unmodified	_MQVNVKGCGNV_					0	0	0			REV__UBR5|p.E2684K|1|0.32|ENSG00000104517|chr8:102259036-102259036|C/T|missense_variant	REV__UBR5|p.E2684K|1|0.32|ENSG00000104517|chr8:102259036-102259036|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.52313232421875	3	383.523209	1147.5478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.935	1	11.935	11.435	12.435	0								0	0	0	0.45144	1	2407	2407		22.562	5.0936	1		+		27386	22256	18514	18582	27755	27755					-0.020073597659120423
MQVVDGEGATY	11	Unmodified	_MQVVDGEGATY_					0	0	0			REV__sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	REV__sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.2587280273438	2	585.260796	1168.50704	-0.28645	-0.00016765	0.2902	0.00016984	0.0037497	2.1945E-06	585.2608806885012	31.858	0.29003	31.858	31.762	32.052	0					17	11	2	0	0	0	0.575	1	10595	10595		38.754	0	1	58433	+		27387	21573	18515	18583	27756	27756					-0.0704742260452349
MQYAHLAQLS	10	Unmodified	_MQYAHLAQLS_					0	0	0			REV__ENST00000433118.5_1_2:130917171-130932539:-|nuORF	REV__ENST00000433118.5_1_2:130917171-130932539:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.2913818359375	2	581.289691	1160.56483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.305	1	32.305	31.805	32.805	0								0	0	0	0.18178	1	12265	12265		66.429	0	1		+		27388	19183	18516	18584	27757	27757					-0.009031158884681645
MQYALAVSK	9	Unmodified	_MQYALAVSK_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7709045410156	2	505.770603	1009.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.778	1	31.778	31.278	32.278	0								0	0	0	0.034344	1	11603	11603		93.598	22.781	1				27389	7941	18517	18585	27758	27758					0.022269981968747743
MQYALAVSK	9	Unmodified	_MQYALAVSK_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.76983642578125	2	505.770603	1009.52665	0.12888	6.5184E-05	-1.3219	-0.00066859	-1.193	-0.00060341	505.77004267373246	31.771	0.20944	31.771	31.668	31.878	0					7	4	2	0	0	0	0.070005	1	12006	12006		88.177	16.881	1	101050			27390	7941	18517	18585	27759	27759					0.022269981968747743
MRDSLSLGRR	10	Unmodified	_MRDSLSLGRR_					0	0	0		ENST00000246151.8_1_1:24114444-24114498:+|nuORF	ENST00000246151.8_1_1:24114444-24114498:+|nuORF	ENST00000246151.8_1_1:24114444-24114498:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.8268432617188	2	595.824763	1189.63497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.431	1	35.431	34.931	35.931	0								0	0	0	0.23484	1	13286	13286		59.931	5.1545	1				27391	8228	18518	18586	27760	27760					0.04774182500000279
MRDYLIDY	8	Unmodified	_MRDYLIDY_					0	0	0			REV__tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	REV__tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.756591796875	2	544.757692	1087.50083	0.37684	0.00020528	-1.4225	-0.00077492	-1.0457	-0.00056963	544.7564105059072	33.804	0.1128	33.804	33.768	33.881	0					5	3	2	0	0	0	0.70055	1	12545	12545		33.516	1.9858	1	172320	+		27392	21735	18519	18587	27761	27761					-0.039418960453986074
MREFGLGYGS	10	Unmodified	_MREFGLGYGS_					0	0	0			REV__tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	REV__tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7588500976562	2	558.760766	1115.50698	-0.13526	-7.5576E-05	-3.2131	-0.0017954	-3.3484	-0.0018709	558.7589498859212	12.747	0.18426	12.747	12.659	12.843	0					6	4	2	0	0	0	0.6796	1	2953	2953		24.519	1.4767	1	1203200	+		27393	22062	18520	18588	27762	27762					-0.04615377813865962
MREWCLQGPMA	11	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))REWC(Carbamidomethyl (C))LQGPMA_	MREWC(1)LQGPMA	M(1)REWCLQGPMA	MREWC(59)LQGPMA	M(59)REWCLQGPM(-59)A	0	1	1			REV__ENST00000246194.7_1_20:32659989-32661416:+|nuORF	REV__ENST00000246194.7_1_20:32659989-32661416:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.53924560546875	3	465.538642	1393.5941	0.18008	8.3834E-05	1.1864	0.00055231	1.3665	0.00063615	465.5391349906332	17.925	0.20076	17.925	17.866	18.067	0					11	4	4	0	0	0	0.33569	1	5154	5154		58.63	19.876	2	444090	+		27394	17943	18521	18589	27763	27763	629	673			-0.08695662926129444
MREWCLQGPMA	11	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))REWC(Carbamidomethyl (C))LQGPMA_	MREWC(1)LQGPMA	M(1)REWCLQGPMA	MREWC(67)LQGPMA	M(65)REWCLQGPM(-65)A	0	1	1			REV__ENST00000246194.7_1_20:32659989-32661416:+|nuORF	REV__ENST00000246194.7_1_20:32659989-32661416:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	697.8056030273438	2	697.804325	1393.5941	2.2646	0.0015802	-0.53358	-0.00037233	1.731	0.0012079	697.8040383894687	17.896	0.67396	17.896	17.785	18.459	0					38	13	6	0	0	0	0.25663	1	5405	5405		67.494	67.494	2	14100000	+		27395	17943	18521	18589	27764	27764	629	673			-0.08695662926129444
MRGLGGDGPGQ	11	Unmodified	_MRGLGGDGPGQ_					0	0	0			REV__ENST00000480908.1_1_3:141457302-141464019:+|nuORF	REV__ENST00000480908.1_1_3:141457302-141464019:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7457275390625	2	522.74819	1043.48183	0.087027	4.5493E-05	1.5176	0.00079334	1.6047	0.00083883	523.2513308185671	27.716	0.26092	27.716	27.572	27.833	0					14	6	3	0	0	0	0.16685	1	9696	9696		78.264	8.6362	1	397120	+		27396	19594	18522	18590	27765	27765					-0.03817432616460792
MRGLTTTEL	9	Oxidation (M)	_M(Oxidation (M))RGLTTTEL_		M(1)RGLTTTEL		M(48)RGLTTTEL	0	0	1		DCAF4L2|p.P110T|1|0.09|ENSG00000176566|chr8:87873644-87873644|G/T|missense_variant	DCAF4L2|p.P110T|1|0.09|ENSG00000176566|chr8:87873644-87873644|G/T|missense_variant	DCAF4L2|p.P110T|1|0.09|ENSG00000176566|chr8:87873644-87873644|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.26708984375	2	519.268424	1036.5223	0.17905	9.2974E-05	-2.0078	-0.0010426	-1.8287	-0.00094959	519.2669961826921	32.491	0.1413	32.491	32.385	32.526	0					8	5	2	0	0	0	0.33044	1	10850	10850		47.657	8.4045	1	44434			27397	744	18523	18591	27766	27766		34			0.00549488983278934
MRGRTLLWRA	10	Unmodified	_MRGRTLLWRA_					0	0	0			REV__SLC22A13|p.P304Rfs*4|1|0.14|ENSG00000172940|chr3:38275471-38275471|C/-|frameshift_variant	REV__SLC22A13|p.P304Rfs*4|1|0.14|ENSG00000172940|chr3:38275471-38275471|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.57623291015625	3	420.576636	1258.70808	-0.31547	-0.00013268	-0.46039	-0.00019363	-0.77586	-0.00032631	420.5763750783893	32.538	0.16773	32.538	32.472	32.64	0					7	3	3	0	0	0	0.54861	1	12289	12289		40.058	8.024	1	120960	+		27398	16483	18524	18592	27767	27767					0.08907356013287426
MRGVWSSRA	9	Unmodified	_MRGVWSSRA_					0	0	0			REV__LMNTD2|p.D349Tfs*14|1|0.37|ENSG00000185522|chr11:556520-556520|C/-|frameshift_variant	REV__LMNTD2|p.D349Tfs*14|1|0.37|ENSG00000185522|chr11:556520-556520|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2680053710938	2	525.269093	1048.52363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.507	1	45.507	45.007	46.007	0								0	0	0	0.17378	1	18227	18227		54.776	1.8396	1		+		27399	17034	18525	18593	27768	27768					0.0013116786271893943
MRKFHIQLA	9	Unmodified	_MRKFHIQLA_					0	0	0			REV__ENST00000574633.5_1_17:4186196-4210367:-|nuORF	REV__ENST00000574633.5_1_17:4186196-4210367:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.3251342773438	2	572.326411	1142.63827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.668	1	14.668	14.168	15.168	0								0	0	0	0.37821	1	3057	3057		17.365	0	1		+		27400	20405	18526	18594	27769	27769					0.07265477344685678
MRKGQVVM	8	Oxidation (M)	_MRKGQVVM(Oxidation (M))_		MRKGQVVM(1)		M(-41)RKGQVVM(41)	0	0	1			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.754638671875	2	482.756972	963.499392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.245	1	31.245	30.745	31.745	0								0	0	0	1.7419	1	10734	10734		40.573	6.4001	2		+		27401	21105	18527	18595	27770	27770		759			0.016181913848527074
MRLLEFFFYQD	11	Unmodified	_MRLLEFFFYQD_					0	0	0		ENST00000427910.1_1_X:35077528-35077942:+|nuORF	ENST00000427910.1_1_X:35077528-35077942:+|nuORF	ENST00000427910.1_1_X:35077528-35077942:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.5777282714844	3	503.579601	1507.71697	0.080022	4.0297E-05	-2.989	-0.0015052	-2.909	-0.0014649	503.5778339253932	15.422	0.16109	15.422	15.339	15.5	0					7	3	3	0	0	0	0.76918	1	4210	4210		21.032	1.7696	1	122140			27402	9460	18528	18596	27771	27771					-0.016577599315496627
MRNAYEEV	8	Unmodified	_MRNAYEEV_					0	0	0		ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.2317810058594	2	506.231842	1010.44913	0.10249	5.1883E-05	-0.46702	-0.00023642	-0.36454	-0.00018454	506.23172174770497	25.301	0.54905	25.301	24.999	25.548	0					20	13	2	0	0	0	0.73426	1	7997	7997		29.15	0	1	78175			27403	989	18529	18597	27772	27772					-0.055676397393199295
MRNPLFLA	8	Unmodified	_MRNPLFLA_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.26922607421875	2	481.26803	960.521507	0.6844	0.00032938	2.0943	0.0010079	2.7787	0.0013373	481.2692256597084	11.338	0.092565	11.338	11.288	11.381	0					5	3	2	0	0	0	0.78318	1	2307	2307		9.4706	0.64823	1	54910	+		27404	16500	18530	18598	27773	27773					0.03966739124916785
MRPCAFRL	8	Oxidation (M)	_M(Oxidation (M))RPCAFRL_		M(1)RPCAFRL		M(42)RPCAFRL	0	0	1		ENST00000381410.4_1_5:53839710-53839797:+|nuORF	ENST00000381410.4_1_5:53839710-53839797:+|nuORF	ENST00000381410.4_1_5:53839710-53839797:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2570495605469	2	505.257139	1008.49973	-1.9848	-0.0010028	1.5786	0.00079762	-0.40615	-0.00020521	505.25804397354386	21.212	0.158	21.212	21.136	21.294	0					8	3	3	0	0	0	0.64096	1	6110	6110		42.474	6.8562	1	89420			27405	9114	18531	18599	27774	27774		365			-0.004183888952979942
MRPEQIMK	8	Unmodified	_MRPEQIMK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.770263671875	2	516.77008	1031.52561	1.5454	0.00079863	-1.9048	-0.00098434	-0.35938	-0.00018572	516.7695358833967	27.551	0.57615	27.551	27.187	27.763	0					29	11	5	0	0	0	0.35045	1	9887	9887		76.774	7.9873	1	858670			27406	7110	18532	18600	27775	27775					0.01110460556333237
MRPKEPTQ	8	Oxidation (M)	_M(Oxidation (M))RPKEPTQ_		M(1)RPKEPTQ		M(66)RPKEPTQ	0	0	1			REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7558898925781	2	501.755484	1001.49641	3.5109	0.0017616	-2.6761	-0.0013428	0.83477	0.00041885	501.75399611135134	17.315	0.129	17.315	17.254	17.383	0					6	4	2	0	0	0	0.43813	1	4326	4326		66.429	13.493	1	144290	+		27407	21170	18533	18601	27776	27776		762			-0.004273604683021404
MRPSVSAG	8	Unmodified	_MRPSVSAG_					0	0	0		ENST00000367025.7_1_1:209933439-209933502:+|nuORF	ENST00000367025.7_1_1:209933439-209933502:+|nuORF	ENST00000367025.7_1_1:209933439-209933502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.70526123046875	2	402.705263	803.395972	1.7937	0.00072233	-1.4559	-0.00058631	0.33777	0.00013602	402.70464990194347	19.194	0.31434	19.194	19.013	19.327	0					16	9	2	0	0	0	0.60719	1	4860	4860		47.916	5.4411	1	99605			27408	8905	18534	18602	27777	27777					-0.013589727313046751
MRPSVSAG	8	Unmodified	_MRPSVSAG_					0	0	0		ENST00000367025.7_1_1:209933439-209933502:+|nuORF	ENST00000367025.7_1_1:209933439-209933502:+|nuORF	ENST00000367025.7_1_1:209933439-209933502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.7052917480469	2	402.705263	803.395972	0.6643	0.00026752	-1.2186	-0.00049074	-0.5543	-0.00022322	402.7049014519592	19.585	0.59733	19.585	19.138	19.735	0					33	13	3	0	0	0	0.34985	1	5971	5971		76.847	26.822	1	848290			27409	8905	18534	18602	27778	27778					-0.013589727313046751
MRPSVSAG	8	Unmodified	_MRPSVSAG_					0	0	0		ENST00000367025.7_1_1:209933439-209933502:+|nuORF	ENST00000367025.7_1_1:209933439-209933502:+|nuORF	ENST00000367025.7_1_1:209933439-209933502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.7049560546875	2	402.705263	803.395972	0.048476	1.9521E-05	-0.53152	-0.00021405	-0.48305	-0.00019452	402.7051556620849	19.449	0.50918	19.449	19.034	19.543	0					17	10	2	0	0	0	0.66372	1	6087	6087		38.806	3.1879	1	353260			27410	8905	18534	18602	27779	27779					-0.013589727313046751
MRQCPLLG	8	Unmodified	_MRQCPLLG_					0	0	0		sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2;sp|F5HC71|IL10H_HCMVMViralinterleukin-10homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL111APE=3SV=1	sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2	sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2370910644531	2	459.238415	916.462278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.75	1	25.75	25.25	26.25	0								0	0	0	1.7419	1	7783	7783		35.201	0.04869	1				27411	22440	18535	18603	27780	27780					0.0007051983909605042
MRQTVAVDV	9	Unmodified	_MRQTVAVDV_					0	0	0		ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENST00000359165.5_1_12:19609181-19609565:-|nuORF	ENST00000359165.5_1_12:19609181-19609565:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7710266113281	2	509.771134	1017.52771	1.1871	0.00060514	-2.6497	-0.0013507	-1.4626	-0.00074558	510.2717852808683	32.64	0.57714	32.64	32.225	32.802	0					33	14	3	0	0	0	0.28504	1	12378	12378		44.377	1.981	1	376310			27412	8845	18536	18604	27781	27781					0.019652125657898978
MRRDQGPGAA	10	Unmodified	_MRRDQGPGAA_					0	0	0			REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF	REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.76025390625	2	529.761632	1057.50871	-1.188	-0.00062936	-1.4198	-0.00075215	-2.6078	-0.0013815	529.760849683555	25.775	0.23514	25.775	25.67	25.905	0					5	3	2	0	0	0	0.50881	1	8251	8251		44.377	0.26039	1	234450	+		27413	16179	18537	18605	27782	27782					-0.017743240052595866
MRRGVAVGK	9	Oxidation (M)	_M(Oxidation (M))RRGVAVGK_		M(1)RRGVAVGK		M(59)RRGVAVGK	0	0	1			REV__ENST00000407950.5_2_7:14942395-14942446:-|nuORF	REV__ENST00000407950.5_2_7:14942395-14942446:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2870178222656	2	495.287285	988.560018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.809	1	14.809	14.309	15.309	0								0	0	0	0.15451	1	3689	3689		58.782	7.4465	1		+		27414	18985	18538	18606	27783	27783		697			0.06528044759454588
MRRSDNKM	8	Unmodified	_MRRSDNKM_					0	0	0		ENST00000357388.7_1_3:160117314-160117401:+|nuORF	ENST00000357388.7_1_3:160117314-160117401:+|nuORF	ENST00000357388.7_1_3:160117314-160117401:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2522583007812	2	519.252585	1036.49062	1.1266	0.000585	-1.5138	-0.00078604	-0.38718	-0.00020104	519.7535018151257	38.996	0.22219	38.996	38.897	39.12	0					15	7	3	0	0	0	0.61938	1	15345	15345		45.952	1.5748	1	138610			27415	8824	18539	18607	27784	27784					-0.026167822516299566
MRRSLVPQ	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))RRSLVPQ_		M(1)RRSLVPQ		M(51)RRSLVPQ	1	0	1		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2|p.S820N|1|0.33|ENSG00000080503|chr9:2084129-2084129|G/A|missense_variant	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.8577575683594	3	348.858809	1043.5546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.334	1	16.334	15.834	16.834	0								0	0	0	1.7419	1	3699	3699		51.335	16.183	1				27416	1639	18540	18608	27785	27785		77			0.03456321176963684
MRSCSRKLK	9	Oxidation (M)	_M(Oxidation (M))RSCSRKLK_		M(1)RSCSRKLK		M(61)RSCSRKLK	0	0	1		ENST00000268182.9_1_15:90984902-90986698:+|nuORF	ENST00000268182.9_1_15:90984902-90986698:+|nuORF	ENST00000268182.9_1_15:90984902-90986698:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8075561523438	2	562.804985	1123.59542	3.4695	0.0019526	1.2017	0.00067635	4.6712	0.002629	562.8056060873249	20.617	0.16374	20.617	20.511	20.675	0					5	3	2	0	0	0	0.20551	1	6589	6589		60.972	60.972	1	993320			27417	8367	18541	18609	27786	27786		338			0.03856339224921612
MRSISWMK	8	Unmodified	_MRSISWMK_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.76806640625	2	519.764797	1037.51504	3.3631	0.001748	3.1037	0.0016132	6.4668	0.0033612	519.7666687506248	42.283	0.20918	42.283	42.198	42.407	0					11	5	3	0	0	0	0.57171	1	16874	16874		52.937	5.2794	1	166050	+		27418	15613	18542	18610	27787	27787					-0.002215220981042876
MRTSLNIE	8	Unmodified	_MRTSLNIE_					0	0	0			REV__nc|ENSG00000162711|Q96P20-2|NLRP3	REV__nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2523498535156	2	482.250034	962.485516	0.074102	3.5736E-05	3.604	0.001738	3.6781	0.0017737	482.25157673014274	25.084	0.27675	25.084	24.909	25.186	0					13	8	2	0	0	0	0.51931	1	7491	7491		58.23	3.5076	1	137530	+		27419	15833	18543	18611	27788	27788					0.0027723715738829924
MRVANSTM	8	Oxidation (M)	_MRVANSTM(Oxidation (M))_		MRVANSTM(1)		M(-58)RVANSTM(58)	0	0	1			REV__F11R|p.P221H|1|0.23|ENSG00000158769|chr1:160999908-160999908|G/T|missense_variant	REV__F11R|p.P221H|1|0.23|ENSG00000158769|chr1:160999908-160999908|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.216796875	2	463.215137	924.415722	4.1483	0.0019216	-0.63487	-0.00029408	3.5134	0.0016275	463.2148608270616	31.892	0.26579	31.892	31.796	32.062	0					18	10	2	0	0	0	0.52345	1	10589	10589		57.811	7.7867	2	223260	+		27420	15693	18544	18612	27789	27789		604			-0.04950964782858591
MRVGLVAK	8	Unmodified	_MRVGLVAK_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.27032470703125	2	437.270573	872.526593	-0.39852	-0.00017426	-0.30128	-0.00013174	-0.69981	-0.000306	437.2705678423048	27.58	0.34443	27.58	27.489	27.833	0					18	8	3	0	0	0	0.26534	1	9642	9642		94.006	17.16	1	1291100			27421	3594	18545	18613	27790	27790					0.08523042987530971
MRVISIGGEG	10	Unmodified	_MRVISIGGEG_					0	0	0			REV__tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	REV__tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7713317871094	2	509.771134	1017.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.647	1	42.647	42.147	43.147	0								0	0	0	0.38093	1	13544	13544		39.253	5.7372	1		+		27422	22044	18546	18614	27791	27791					0.01965212565812635
MRVTRKPG	8	Unmodified	_MRVTRKPG_					0	0	0		ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant	ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant	ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7793273925781	2	472.776554	943.538554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.878	1	28.878	28.378	29.378	0								0	0	0	1.7419	1	10254	10254		44.117	3.5442	1				27423	120	18547	18615	27792	27792					0.06452659730723553
MRWPVILM	8	Oxidation (M)	_M(Oxidation (M))RWPVILM_		M(1)RWPVILM		M(47)RWPVILM(-47)	0	0	1		ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2863159179688	2	531.285366	1060.55618	0.38954	0.00020696	2.1491	0.0011418	2.5387	0.0013488	531.2865268124079	35.176	0.15051	35.176	35.113	35.263	0					11	7	2	0	0	0	0.61433	1	11521	11521		46.766	7.7449	2	56248			27424	8998	18548	18616	27793	27793		359			0.028322389413688143
MSAGVAIGSEK	11	Unmodified	_MSAGVAIGSEK_					0	0	0		tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2611694335938	2	525.268424	1048.5223	0.66989	0.00035187	-4.352	-0.002286	-3.6821	-0.0019341	525.2660454222387	24.774	0.28021	24.774	24.677	24.957	0					15	8	3	0	0	0	0.44903	1	7435	7435		47.96	5.0953	1	140890			27425	22809	18549	18617	27794	27794					-2.511016714379366E-05
MSCMCWPNS	9	Oxidation (M)	_MSCM(Oxidation (M))CWPNS_		M(0.181)SCM(0.819)CWPNS		M(-6.6)SCM(6.6)CWPNS	0	0	1		ENST00000450053.7_2_3:47030372-47030588:+|nuORF	ENST00000450053.7_2_3:47030372-47030588:+|nuORF	ENST00000450053.7_2_3:47030372-47030588:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.6812744140625	2	537.679216	1073.34388	1.895	0.0010189	0.18341	9.8617E-05	2.0784	0.0011175	537.6802470038016	25.915	1.3853	25.915	24.991	26.376	0					95	26	6	0	0	0	0.36892	1	9118	9118		44.377	21.335	2	2062400			27426	9644	18550	18618	27795	27795		388			-0.18985963523255123
MSDTTFKAL	9	Unmodified	_MSDTTFKAL_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;CAPZA2|p.R259C|1|0.25|ENSG00000198898|chr7:116917781-116917781|C/T|missense_variant;CAPZA1|p.R259H|1|0.31|ENSG00000116489|chr1:112670047-112670047|G/A|missense_variant	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.25238037109375	2	507.252243	1012.48993	-0.089043	-4.5167E-05	-0.16615	-8.428E-05	-0.25519	-0.00012945	507.25222841657654	35.543	0.3082	35.543	35.454	35.762	0					33	15	3	0	0	0	0.070005	1	11633	11633		88.177	36.984	1	410100			27427	7635	18551	18619	27796	27796					-0.01581298419682753
MSDTTFKAL	9	Unmodified	_MSDTTFKAL_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;CAPZA2|p.R259C|1|0.25|ENSG00000198898|chr7:116917781-116917781|C/T|missense_variant;CAPZA1|p.R259H|1|0.31|ENSG00000116489|chr1:112670047-112670047|G/A|missense_variant	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.252197265625	2	507.252243	1012.48993	-0.033188	-1.6835E-05	-0.45664	-0.00023163	-0.48983	-0.00024847	507.2521762346668	35.847	0.4337	35.847	35.7	36.134	0					29	11	4	0	0	0	0.0059092	1	13452	13452		154.12	76.801	1	2078700			27428	7635	18551	18619	27797	27797					-0.01581298419682753
MSDTTFKAL	9	Unmodified	_MSDTTFKAL_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;CAPZA2|p.R259C|1|0.25|ENSG00000198898|chr7:116917781-116917781|C/T|missense_variant;CAPZA1|p.R259H|1|0.31|ENSG00000116489|chr1:112670047-112670047|G/A|missense_variant	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.25244140625	2	507.252243	1012.48993	-0.63558	-0.0003224	0.63745	0.00032335	0.0018618	9.444E-07	507.2524456662753	35.607	0.36403	35.607	35.5	35.864	0					46	18	4	0	0	0	0.27123	1	12030	12030		53.089	22.585	1	535980			27429	7635	18551	18619	27798	27798					-0.01581298419682753
MSDTTFKAL	9	Unmodified	_MSDTTFKAL_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;CAPZA2|p.R259C|1|0.25|ENSG00000198898|chr7:116917781-116917781|C/T|missense_variant;CAPZA1|p.R259H|1|0.31|ENSG00000116489|chr1:112670047-112670047|G/A|missense_variant	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2522277832031	2	507.252243	1012.48993	1.1126	0.00056438	-1.2523	-0.00063524	-0.13971	-7.0867E-05	507.2515553475156	35.821	0.32192	35.821	35.706	36.028	0					23	9	3	0	0	0	0.015496	1	13902	13902		129.42	52.575	1	3579700			27430	7635	18551	18619	27799	27799					-0.01581298419682753
MSDTTFKAL	9	Unmodified	_MSDTTFKAL_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;CAPZA2|p.R259C|1|0.25|ENSG00000198898|chr7:116917781-116917781|C/T|missense_variant;CAPZA1|p.R259H|1|0.31|ENSG00000116489|chr1:112670047-112670047|G/A|missense_variant	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2522888183594	2	507.252243	1012.48993	-0.37247	-0.00018894	0.99262	0.00050351	0.62015	0.00031457	507.2526318835732	35.816	0.15427	35.816	35.73	35.884	0					7	4	2	0	0	0	0.19952	1	13897	13897		61.691	12.25	1	145120			27431	7635	18551	18619	27800	27800					-0.01581298419682753
MSDTTFKAL	9	Oxidation (M)	_M(Oxidation (M))SDTTFKAL_		M(1)SDTTFKAL		M(80)SDTTFKAL	0	0	1		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;CAPZA2|p.R259C|1|0.25|ENSG00000198898|chr7:116917781-116917781|C/T|missense_variant;CAPZA1|p.R259H|1|0.31|ENSG00000116489|chr1:112670047-112670047|G/A|missense_variant	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2501220703125	2	515.2497	1028.48485	1.41	0.00072649	-0.93207	-0.00048025	0.4779	0.00024624	515.249243860537	32.041	0.19656	32.041	31.945	32.142	0					11	4	3	0	0	0	0.095583	1	12155	12155		80.455	29.119	1	374670			27432	7635	18551	18620	27801	27801		308			-0.028256022823143212
MSEFFISTAS	10	Unmodified	_MSEFFISTAS_					0	0	0			REV__SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	REV__SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.254638671875	2	560.254982	1118.49541	1.7971	0.0010068	1.0626	0.00059533	2.8597	0.0016021	560.2539896082122	45.585	0.13604	45.585	45.526	45.662	0					10	7	2	0	0	0	0.58896	1	17626	17626		35.618	0.41757	1	39128	+		27433	16681	18552	18621	27802	27802					-0.059096196278687785
MSEKQLKQ	8	Oxidation (M)	_M(Oxidation (M))SEKQLKQ_		M(1)SEKQLKQ		M(63)SEKQLKQ	0	0	1		ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant;ENSG00000134318|ENST00000315872|ROCK2	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2615051269531	2	504.263142	1006.51173	-2.0165	-0.0010168	-1.1861	-0.0005981	-3.2026	-0.0016149	504.2624446319913	35.373	0.19939	35.373	35.297	35.496	0					17	7	3	0	0	0	0.46905	1	12589	12589		63.306	63.306	1	181750			27434	3913	18553	18622	27803	27803		161			0.008735063289009304
MSGFLICVE	9	Carbamidomethyl (C)	_MSGFLIC(Carbamidomethyl (C))VE_	MSGFLIC(1)VE		MSGFLIC(53)VE		0	1	0			REV__ENST00000374724.1_2_9:108061538-108097897:+|nuORF	REV__ENST00000374724.1_2_9:108061538-108097897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2490844726562	2	528.248646	1054.48274	0.10814	5.7124E-05	0.85476	0.00045153	0.9629	0.00050865	528.2490719152858	19.911	0.24586	19.911	19.773	20.019	0					8	5	3	0	0	0	0.26904	1	6105	6105		53.351	7.3995	1	469400	+		27435	18696	18554	18623	27804	27804	667				-0.04232354291775664
MSGLQRNP	8	Unmodified	_MSGLQRNP_					0	0	0			REV__ENSG00000204599|ENST00000396551|TRIM39	REV__ENSG00000204599|ENST00000396551|TRIM39	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2767028808594	2	451.729269	901.443985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.251	1	24.251	23.751	24.751	0								0	0	0	1.7419	1	8464	8464		57.811	3.0466	1		+		27436	17491	18555	18624	27805	27805					-0.010678988112658772
MSGPLSPRR	9	Unmodified	_MSGPLSPRR_					0	0	0		ENST00000474874.5_1_1:8086278-8086305:-|nuORF	ENST00000474874.5_1_1:8086278-8086305:-|nuORF	ENST00000474874.5_1_1:8086278-8086305:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.771240234375	2	500.771468	999.528384	1.1106	0.00055616	-3.0801	-0.0015424	-1.9695	-0.00098626	500.77061342453464	21.096	0.46021	21.096	20.828	21.288	0					31	9	4	0	0	0	0.078509	1	6794	6794		85.161	15.533	1	734570			27437	9897	18556	18625	27806	27806					0.028600520054965273
MSGSPMKR	8	Unmodified	_MSGSPMKR_					0	0	0		ENST00000367240.6_1_1:203029522-203032974:+|nuORF	ENST00000367240.6_1_1:203029522-203032974:+|nuORF	ENST00000367240.6_1_1:203029522-203032974:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2221374511719	2	447.220223	892.425892	-0.42472	-0.00018994	3.5131	0.0015711	3.0884	0.0013812	447.2218945259601	37.834	0.39917	37.834	37.483	37.882	0					15	12	2	0	0	0	0.5676	1	14364	14364		53.351	5.6941	1	55141			27438	8910	18557	18626	27807	27807					-0.024623570576295606
MSGSPMKR	8	Unmodified	_MSGSPMKR_					0	0	0		ENST00000367240.6_1_1:203029522-203032974:+|nuORF	ENST00000367240.6_1_1:203029522-203032974:+|nuORF	ENST00000367240.6_1_1:203029522-203032974:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.2218017578125	2	447.220223	892.425892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.56	1	38.56	38.06	39.06	0								0	0	0	1.7419	1	15133	15133		37.159	0.13063	1				27439	8910	18557	18626	27808	27808					-0.024623570576295606
MSHGVQSP	8	Unmodified	_MSHGVQSP_					0	0	0			REV__ENST00000342537.7_1_14:105268810-105268885:+|nuORF	REV__ENST00000342537.7_1_14:105268810-105268885:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.6947937011719	2	421.694895	841.375237	0.85168	0.00035915	-1.5293	-0.00064491	-0.67765	-0.00028576	421.69441129796184	22.162	0.1666	22.162	22.054	22.22	0					8	3	3	0	0	0	0.64144	1	7472	7472		42.396	11.892	1	559030	+		27440	18460	18558	18627	27809	27809					-0.0517956311097123
MSKEIVLPY	9	Oxidation (M)	_M(Oxidation (M))SKEIVLPY_		M(1)SKEIVLPY		M(66)SKEIVLPY	0	0	1			REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.295166015625	2	548.291368	1094.56818	0.48291	0.00026478	-4.4411	-0.002435	-3.9582	-0.0021702	548.2893948214373	33.777	0.57033	33.777	33.649	34.219	0					23	15	2	0	0	0	0.16002	1	12629	12629		66.429	8.618	1	3507200	+		27441	21988	18559	18628	27810	27810		794			0.02468134165542324
MSKEQVEE	8	Unmodified	_MSKEQVEE_					0	0	0		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2236633300781	2	490.223682	978.432811	0.769	0.00037698	-0.51428	-0.00025211	0.25472	0.00012487	490.22342320563035	32.363	0.21957	32.363	32.253	32.472	0					8	4	2	0	0	0	0.39125	1	12207	12207		71.877	0	1	416840			27442	4421	18560	18629	27811	27811					-0.057267656960675595
MSKGKVLGFQ	10	Unmodified	_MSKGKVLGFQ_					0	0	0			REV__ARFGEF2-SULF2|2|fusion	REV__ARFGEF2-SULF2|2|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8040771484375	2	547.804977	1093.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.382	1	29.382	28.882	29.882	0								0	0	0	0.37129	1	10873	10873		39.253	2.0937	1		+		27443	12195	18561	18630	27812	27812					0.05234662496582132
MSKGTGQLGL	10	Unmodified	_MSKGTGQLGL_					0	0	0			REV__ENST00000595700.5_1_19:44242246-44254893:-|nuORF	REV__ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2636413574219	2	496.265684	990.516816	-1.1945	-0.00059277	-3.3058	-0.0016406	-4.5003	-0.0022333	496.2644127435413	30.099	0.26891	30.099	29.984	30.252	0					19	10	3	0	0	0	0.4758	1	9853	9853		47.96	0.043923	1	373120	+		27444	13798	18562	18631	27813	27813					0.021178101914983927
MSLDIVLK	8	Unmodified	_MSLDIVLK_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7699279785156	2	459.770071	917.52559	-0.91428	-0.00042036	1.5121	0.00069522	0.59782	0.00027486	459.77038063598945	19.558	0.14221	19.558	19.484	19.626	0					6	4	2	0	0	0	0.49216	1	5326	5326		60.972	7.6205	1	138770			27445	1979	18563	18632	27814	27814					0.0635278382795832
MSLDIVLK	8	Unmodified	_MSLDIVLK_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7674560546875	2	459.770071	917.52559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.762	1	19.762	19.262	20.262	0								0	0	0	1.7419	1	6166	6166		79.939	2.6216	1				27446	1979	18563	18632	27815	27815					0.0635278382795832
MSLETVWQV	9	Unmodified	_MSLETVWQV_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;ENST00000527416.2_1_14:95555309-95557645:-|nuORF;ENST00000527554.2_1_14:95557369-95557645:-|nuORF	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7733764648438	2	546.773342	1091.53213	0.44114	0.0002412	-0.35964	-0.00019664	0.081495	4.4559E-05	546.7733054009778	12.684	0.16226	12.684	12.595	12.758	0					9	5	3	0	0	0	0.51817	1	2723	2723		30.504	30.504	1	447240			27447	2057	18564	18633	27816	27816					-0.009973230113246245
MSMKMGWK	8	Oxidation (M)	_MSMKM(Oxidation (M))GWK_		MSM(0.038)KM(0.962)GWK		M(-45)SM(-14)KM(14)GWK	0	0	1		ENST00000476805.2_1_2:64863869-64977517:-|nuORF	ENST00000476805.2_1_2:64863869-64977517:-|nuORF	ENST00000476805.2_1_2:64863869-64977517:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7315368652344	2	507.732109	1013.44966	-1.9087	-0.00096911	1.0231	0.00051948	-0.88558	-0.00044964	507.73274827366794	32.468	0.54564	32.468	32.343	32.889	0					36	16	3	0	0	0	0.61938	1	11275	11275		45.952	6.9305	3	224230			27448	9912	18565	18634	27817	27817		399			-0.056522596154536586
MSMLMKIK	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))MSM(Oxidation (M))LMKIK_		M(0.02)SM(0.943)LM(0.038)KIK		M(-17)SM(14)LM(-14)KIK	1	0	1		ENST00000312938.4_1_3:101369845-101370013:-|nuORF	ENST00000312938.4_1_3:101369845-101370013:-|nuORF	ENST00000312938.4_1_3:101369845-101370013:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.26904296875	2	520.271067	1038.52758	-1.3495	-0.00070212	-1.7255	-0.00089774	-3.0751	-0.0015999	520.2699888354443	40.138	0.26342	40.138	40.051	40.315	0					29	13	3	0	0	0	0.61938	1	14259	14259		45.952	7.1458	3	238910			27449	8566	18566	18635	27818	27818		342			0.009857532499154331
MSPEGSPSKSP	11	Unmodified	_MSPEGSPSKSP_					0	0	0		ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2577514648438	2	552.255514	1102.49647	1.8175	0.0010037	3.122	0.0017241	4.9395	0.0027278	552.2570372327934	39.692	0.27617	39.692	39.559	39.835	0					9	6	2	0	0	0	0.35529	1	15719	15719		56.434	6.9922	1	97083			27450	1538	18567	18636	27819	27819					-0.05067405258978397
MSPPAQPHPP	10	Unmodified	_MSPPAQPHPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7597045898438	2	529.758027	1057.5015	3.4456	0.0018253	0.0013064	6.9205E-07	3.4469	0.001826	529.7581104947895	25.924	0.40115	25.924	25.633	26.034	0					17	6	4	0	0	0	0.42631	1	9108	9108		53.351	7.3995	1	1798600	+		27451	16921	18568	18637	27820	27820					-0.02495056605721402
MSPSCSSFLE	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))SPSCSSFLE_		M(1)SPSCSSFLE		M(49)SPSCSSFLE	1	0	1		ENST00000324771.12_1_6:30867268-30867352:+|nuORF	ENST00000324771.12_1_6:30867268-30867352:+|nuORF	ENST00000324771.12_1_6:30867268-30867352:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.22802734375	2	573.228107	1144.44166	-1.4704	-0.00084285	-1.5626	-0.00089575	-3.033	-0.0017386	573.2279930933621	26.732	0.2807	26.732	26.539	26.82	0					18	6	4	0	0	0	0.46215	1	8612	8612		49.442	7.0454	1	256650			27452	8636	18569	18638	27821	27821		345			-0.12478160121872861
MSQPQMTPV	9	Unmodified	_MSQPQMTPV_					0	0	0			REV__ENST00000578711.1_1_17:7126890-7127154:+|nuORF	REV__ENST00000578711.1_1_17:7126890-7127154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28643798828125	2	509.738445	1017.46234	0.94481	0.00048161	-3.7639	-0.0019186	-2.8191	-0.001437	509.7369131330636	36.159	0.08783	36.159	36.095	36.183	0					4	2	2	0	0	0	0.28897	1	13603	13603		51.193	5.2204	1	31951	+		27453	20439	18570	18639	27822	27822					-0.04569524951580206
MSQVLDCIF	9	Unmodified	_MSQVLDCIF_					0	0	0		ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant;ACACB|p.T1476Hfs*7|1|0.28|ENSG00000076555|chr12:109235620-109235621|-/T|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB	ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant	ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2490844726562	2	528.248646	1054.48274	3.4677	0.0018318	-2.3424	-0.0012374	1.1253	0.00059443	528.2472182810185	30.171	0.31146	30.171	30.065	30.376	0					10	6	2	0	0	0	0.27249	1	11150	11150		52.937	1.6012	1	663460			27454	30	18571	18640	27823	27823					-0.042323542917984014
MSRCLLKSN	9	Unmodified	_MSRCLLKSN_					0	0	0		ENST00000333010.6_1_5:146971228-146981327:-|nuORF	ENST00000333010.6_1_5:146971228-146981327:-|nuORF	ENST00000333010.6_1_5:146971228-146981327:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2747192382812	2	526.272986	1050.53142	3.4577	0.0018197	0.54478	0.0002867	4.0025	0.0021064	526.2732309251223	40.878	0.37379	40.878	40.687	41.06	0					12	6	3	0	0	0	0.35021	1	16227	16227		45.972	0	1	417060			27455	8683	18572	18641	27824	27824					0.00817559067968432
MSREVLRR	8	Unmodified	_MSREVLRR_					0	0	0		CHSY1|p.G651Vfs*14|1|0.08|ENSG00000131873|chr15:101177845-101177846|-/A|frameshift_variant;ENSG00000131873|ENST00000254190|CHSY1;CHSY1|p.V225M|1|0.18|ENSG00000131873|chr15:101235225-101235225|C/T|missense_variant	CHSY1|p.G651Vfs*14|1|0.08|ENSG00000131873|chr15:101177845-101177846|-/A|frameshift_variant	CHSY1|p.G651Vfs*14|1|0.08|ENSG00000131873|chr15:101177845-101177846|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7984008789062	2	523.798017	1045.58148	0.38302	0.00020062	-0.63486	-0.00033254	-0.25184	-0.00013191	523.7977071481164	37.907	0.18478	37.907	37.838	38.022	0					17	10	2	0	0	0	0.69548	1	12820	12820		34.173	7.4796	1	237550			27456	542	18573	18642	27825	27825					0.060514297881582024
MSRILFCF	8	Carbamidomethyl (C)	_MSRILFC(Carbamidomethyl (C))F_	MSRILFC(1)F		MSRILFC(44)F		0	1	0		ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.269287109375	2	537.267173	1072.51979	3.3436	0.0017964	0.36849	0.00019798	3.7121	0.0019944	537.2673213974728	39.121	2.5636	39.121	38.055	40.619	0					169	56	4	0	0	0	0.63077	2	15496	15496;15665		44.117	44.117	1	2285500			27457	8350	18574	18643	27826;27827	27826	363				-0.01356637955336737
MSRRMLVGD	9	Unmodified	_MSRRMLVGD_					0	0	0		ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7724609375	2	532.770611	1063.52667	3.4021	0.0018126	-0.012261	-6.5325E-06	3.3899	0.001806	532.7705539305363	33.475	0.26833	33.475	33.365	33.633	0					24	5	5	0	0	0	0.055856	1	12719	12719		93.195	93.195	1	5701800			27458	10163	18575	18644	27828	27828					-0.002553250747723723
MSRSREKAK	9	Oxidation (M)	_M(Oxidation (M))SRSREKAK_		M(1)SRSREKAK		M(64)SRSREKAK	0	0	1			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.798583984375	2	554.798214	1107.58188	1.8153	0.0010071	-0.87326	-0.00048448	0.94203	0.00052264	554.7977486564788	27.969	0.38808	27.969	27.833	28.221	0					15	9	2	0	0	0	0.17854	1	9826	9826		64.207	8.7031	1	885690	+		27459	16506	18576	18645	27829	27829		629			0.03238804717329913
MSRSREKAK	9	Oxidation (M)	_M(Oxidation (M))SRSREKAK_		M(1)SRSREKAK		M(100)SRSREKAK	0	0	1			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7988891601562	2	554.798214	1107.58188	1.8206	0.0010101	-0.82059	-0.00045526	1.0001	0.00055483	554.7978570011768	27.902	0.5621	27.902	27.797	28.359	0					18	11	2	0	0	0	0.037569	1	10053	10053		101.6	35.798	1	1418000	+		27460	16506	18576	18645	27830	27830		629			0.03238804717329913
MSSIKLKEE	9	Unmodified	_MSSIKLKEE_					0	0	0		ENSG00000213398|ENST00000264005|LCAT	ENSG00000213398|ENST00000264005|LCAT	ENSG00000213398|ENST00000264005|LCAT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7857055664062	2	532.78645	1063.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.289	1	32.289	31.789	32.789	0								0	0	0	0.3063	1	12258	12258		26.693	0	1				27461	7787	18577	18646	27831	27831					0.02910946160181993
MSSPCHIEM	9	Carbamidomethyl (C)	_MSSPC(Carbamidomethyl (C))HIEM_	MSSPC(1)HIEM		MSSPC(57)HIEM		0	1	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2198486328125	2	546.219562	1090.42457	1.8781	0.0010258	-2.2686	-0.0012392	-0.39054	-0.00021332	546.2188239266774	31.624	0.38271	31.624	31.381	31.764	0					21	8	4	0	0	0	0.24095	1	11952	11952		56.721	12.344	1	377620			27462	8068	18578	18647	27832	27832	351				-0.11702359208697999
MSSTPVPLGTC	11	Unmodified	_MSSTPVPLGTC_					0	0	0		ENST00000512871.1_1_5:126859171-126859306:+|nuORF	ENST00000512871.1_1_5:126859171-126859306:+|nuORF	ENST00000512871.1_1_5:126859171-126859306:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7566528320312	2	546.756835	1091.49912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.874	1	34.874	34.374	35.374	0								0	0	0	0.40299	1	11420	11420		36.447	2.5251	1				27463	10243	18579	18648	27833	27833					-0.04297273125666834
MSTGGDFGN	9	Unmodified	_MSTGGDFGN_					0	0	0		ENST00000541795.1_1_11:73441692-73471680:-|nuORF;nc|ENSG00000175582|P20340-3|RAB6A;nc|ENSG00000175582|P20340-2|RAB6A;ENSG00000175582|ENST00000336083|RAB6A	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.17474365234375	2	443.173992	884.333432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.908	1	42.908	42.408	43.408	0								0	0	0	0.31838	1	16227	16227		31.53	5.9558	1				27464	6568	18580	18649	27834	27834					-0.11336163590158321
MSTQFFISF	9	Unmodified	_MSTQFFISF_					0	0	0			REV__ENST00000401449.5_1_18:3458286-3458364:+|nuORF	REV__ENST00000401449.5_1_18:3458286-3458364:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2611083984375	2	554.26261	1106.51067	0.50746	0.00028127	-1.3272	-0.00073564	-0.81979	-0.00045438	554.2619453730831	37.91	0.30722	37.91	37.694	38.001	0					17	10	2	0	0	0	0.2873	1	14793	14793		51.335	1.8939	1	115480	+		27465	18949	18581	18650	27835	27835					-0.03832708040022226
MSTTAASLFY	10	Unmodified	_MSTTAASLFY_					0	0	0			REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF	REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2595825195312	2	546.257525	1090.5005	3.7811	0.0020655	2.3898	0.0013055	6.1709	0.0033709	546.2587820880752	41.641	0.55289	41.641	41.428	41.981	0					34	15	3	0	0	0	0.357	1	16541	16541		60.972	4.2509	1	1008600	+		27466	19767	18582	18651	27836	27836					-0.04113315765266634
MSVKRPDVL	9	Unmodified	_MSVKRPDVL_					0	0	0		nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7962036132812	2	522.797152	1043.57975	0.086723	4.5338E-05	-2.6243	-0.001372	-2.5375	-0.0013266	522.7957918506273	43.817	0.19773	43.817	43.708	43.905	0					17	10	3	0	0	0	0.4966	1	16483	16483		32.812	0	1	81423			27467	1240	18583	18652	27837	27837					0.05970375979518394
MSVWVKVL	8	Unmodified	_MSVWVKVL_					0	0	0			REV__nc|ENSG00000242485|Q9BYC9-2|MRPL20	REV__nc|ENSG00000242485|Q9BYC9-2|MRPL20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.28192138671875	2	481.280606	960.546659	-0.10716	-5.1573E-05	2.7112	0.0013048	2.604	0.0012533	481.2819555209542	35.167	0.22909	35.167	35.075	35.304	0					10	6	2	0	0	0	0.49216	1	13595	13595		60.972	2.19	1	115430	+		27468	21225	18584	18653	27838	27838					0.06480793927482864
MSVYRMTK	8	Unmodified	_MSVYRMTK_					0	0	0			REV__ENST00000528944.5_1_1:145816715-145818810:-|nuORF	REV__ENST00000528944.5_1_1:145816715-145818810:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2585144042969	2	508.256805	1014.49906	2.9668	0.0015079	0.656	0.00033342	3.6228	0.0018413	508.25707046878455	47.963	0.29031	47.963	47.859	48.15	0					23	15	2	0	0	0	0.3961	1	19088	19088		71.296	1.6681	1	206860	+		27469	20023	18585	18654	27839	27839					-0.007612283350113103
MTAAAASN	8	Unmodified	_MTAAAASN_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.668212890625	2	368.668346	735.322139	0.90951	0.00033531	-1.8672	-0.00068836	-0.95764	-0.00035305	368.6679371136455	47.145	0.19667	47.145	47.062	47.259	0					12	8	2	0	0	0	0.78978	1	18853	18853		21.96	0.25755	1	79342			27470	5226;11602	18586	18655	27840	27840					-0.05610940893643601
MTADMAVSVN	10	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))TADM(Oxidation (M))AVSVN_		M(1)TADM(1)AVSVN		M(80)TADM(80)AVSVN	1	0	2		ENST00000396941.8_1_14:24587614-24587671:+|nuORF	ENST00000396941.8_1_14:24587614-24587671:+|nuORF	ENST00000396941.8_1_14:24587614-24587671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.7341918945312	2	556.733557	1111.45256	1.7024	0.00094778	-0.44653	-0.0002486	1.2559	0.00069918	556.7333411985053	19.372	0.85954	19.372	19.017	19.877	0					30	17	4	0	0	0	0.19797	1	6124	6124		79.713	15.505	1	1422500			27471	9210	18587	18656	27841	27841		372;373			-0.0987075774760342
MTADVIELK	9	Unmodified	_MTADVIELK_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7788391113281	2	510.275718	1018.53688	1.1792	0.00060173	-0.02881	-1.4701E-05	1.1504	0.00058703	510.27565805821285	37.042	0.22331	37.042	36.984	37.207	0					13	6	3	0	0	0	0.16806	1	14009	14009		65.465	17.808	1	103710			27472	1412	18588	18657	27842	27842					0.0283556113143959
MTADVIELK	9	Unmodified	_MTADVIELK_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.27557373046875	2	510.275718	1018.53688	0.31754	0.00016203	0.46699	0.00023829	0.78453	0.00040033	510.2756131006821	37.042	0.30912	37.042	36.869	37.178	0					17	9	3	0	0	0	0.04067	1	14458	14458		98.582	33.117	1	180520			27473	1412	18588	18657	27843	27843					0.0283556113143959
MTAEEMKATE	10	Unmodified	_MTAEEMKATE_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.7498779296875	2	570.749207	1139.48386	-0.00048153	-2.7483E-07	1.1316	0.00064589	1.1312	0.00064561	570.749859317136	17.222	0.25619	17.222	17.134	17.39	0					15	6	4	0	0	0	0.54861	1	4824	4824		40.058	0	1	1126200			27474	939	18589	18658	27844	27844					-0.08030184713493327
MTAEEMKATE	10	Unmodified	_MTAEEMKATE_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.7507934570312	2	570.749207	1139.48386	0.09445	5.3907E-05	2.4752	0.0014127	2.5697	0.0014667	570.7505738703862	16.987	0.10961	16.987	16.921	17.031	0					7	4	2	0	0	0	0.52275	1	4166	4166		42.864	10.052	1	152190			27475	939	18589	18658	27845	27845					-0.08030184713493327
MTAEEMKATE	10	Unmodified	_MTAEEMKATE_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.7498168945312	2	570.749207	1139.48386	1.9964	0.0011394	-1.0402	-0.00059367	0.95623	0.00054577	570.7486153638235	17.208	0.22031	17.208	17.098	17.318	0					11	4	3	0	0	0	0.54861	1	5083	5083		40.058	5.8856	1	1516100			27476	939	18589	18658	27846	27846					-0.08030184713493327
MTFGRVSDLGQ	11	Unmodified	_MTFGRVSDLGQ_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	605.800048828125	2	605.79788	1209.58121	2.9903	0.0018115	0.39545	0.00023956	3.3858	0.0020511	605.7982510588723	41.351	0.50191	41.351	41.175	41.677	0					35	12	4	0	0	0	0.34891	1	16411	16411		47.96	0	1	538580			27477	2540	18590	18659	27847	27847					-0.015200347223753852
MTFPATWTGAK	11	Unmodified	_MTFPATWTGAK_					0	0	0		ENST00000310396.9_1_7:120629626-120629659:+|nuORF	ENST00000310396.9_1_7:120629626-120629659:+|nuORF	ENST00000310396.9_1_7:120629626-120629659:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8001098632812	2	605.799891	1209.58523	0.7404	0.00044853	-1.2542	-0.00075978	-0.51378	-0.00031124	605.7992559922028	41.475	0.38176	41.475	41.279	41.661	0					35	16	3	0	0	0	0.44591	1	16268	16268		46.457	0.48454	1	107030			27478	8545	18591	18660	27848	27848					-0.011179452286796732
MTGNVVASI	9	Oxidation (M)	_M(Oxidation (M))TGNVVASI_		M(1)TGNVVASI		M(99)TGNVVASI	0	0	1		ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.233642578125	2	454.23131	906.448068	0.87804	0.00039884	1.5527	0.00070529	2.4308	0.0011041	454.2322629616733	24.673	0.34912	24.673	24.565	24.914	0					19	7	5	0	0	0	0.0406	1	8547	8547		98.629	13.714	1	1702800			27479	3980	18592	18661	27849	27849		165			-0.00889854108208965
MTGSGSKNTQ	10	Unmodified	_MTGSGSKNTQ_					0	0	0			REV__ENSG00000077549|ENST00000264202|CAPZB	REV__ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7323303222656	2	505.732206	1009.44986	1.0734	0.00054284	-0.71482	-0.00036151	0.35856	0.00018133	505.73191028789614	30.688	1.0478	30.688	30.35	31.398	0					58	23	4	0	0	0	0.63019	1	11447	11447		30.569	30.569	1	6621500	+		27480	13264	18593	18662	27850	27850					-0.05448845090256782
MTGSSAPCK	9	Unmodified	_MTGSSAPCK_					0	0	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.19671630859375	2	441.196413	880.378273	0.77349	0.00034126	-0.70907	-0.00031284	0.064424	2.8424E-05	441.19634523992124	15.762	0.15372	15.762	15.697	15.85	0					12	6	3	0	0	0	0.035062	1	3484	3484		104.06	10.861	1	132240			27481	9140	18594	18663	27851	27851					-0.06670056048483275
MTGSSAPCK	9	Unmodified	_MTGSSAPCK_					0	0	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.1961669921875	2	441.196413	880.378273	-0.06975	-3.0773E-05	-1.0218	-0.00045081	-1.0915	-0.00048159	441.19630782477793	16.071	0.48945	16.071	15.949	16.438	0					20	11	4	0	0	0	0.0080613	1	4278	4278		145.16	20.561	1	886850			27482	9140	18594	18663	27852	27852					-0.06670056048483275
MTGSSAPCK	9	Unmodified	_MTGSSAPCK_					0	0	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.19598388671875	2	441.196413	880.378273	0.56742	0.00025034	-1.7759	-0.00078354	-1.2085	-0.00053319	441.1959566370209	16.07	0.22917	16.07	15.979	16.208	0					15	5	5	0	0	0	0.056004	1	4274	4274		93.143	5.3889	1	551270			27483	9140	18594	18663	27853	27853					-0.06670056048483275
MTGSSAPCK	9	Unmodified	_MTGSSAPCK_					0	0	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.1960754394531	2	441.196413	880.378273	-0.30733	-0.00013559	-1.093	-0.00048222	-1.4003	-0.00061781	441.196234515591	16.038	0.46706	16.038	15.88	16.347	0					25	9	5	0	0	0	0.01873	1	4491	4491		124.08	21.307	1	3353500			27484	9140	18594	18663	27854	27854					-0.06670056048483275
MTGSSAPCK	9	Unmodified	_MTGSSAPCK_					0	0	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.1961669921875	2	441.196413	880.378273	0.37173	0.000164	-0.95298	-0.00042045	-0.58125	-0.00025645	441.1961846118634	15.806	0.17824	15.806	15.729	15.907	0					15	7	3	0	0	0	0.27249	1	3605	3605		52.937	2.9122	1	184780			27485	9140	18594	18663	27855	27855					-0.06670056048483275
MTGSSAPCK	9	Unmodified	_MTGSSAPCK_					0	0	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.1965026855469	2	441.196413	880.378273	-0.5331	-0.0002352	-0.21167	-9.3387E-05	-0.74477	-0.00032859	441.1965681260993	16.005	0.47099	16.005	15.896	16.367	0					20	9	3	0	0	0	0.01873	1	4330	4330		124.08	22.479	1	2620300			27486	9140	18594	18663	27856	27856					-0.06670056048483275
MTGSSAPCK	9	Carbamidomethyl (C)	_MTGSSAPC(Carbamidomethyl (C))K_	MTGSSAPC(1)K		MTGSSAPC(100)K		0	1	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7068786621094	2	469.707145	937.399737	0.20193	9.4846E-05	-1.3994	-0.00065733	-1.1975	-0.00056248	469.706730732417	15.076	0.1506	15.076	15.023	15.174	0					8	3	3	0	0	0	0.035062	1	3829	3829		104.06	35.572	1	688770			27487	9140	18594	18664	27857	27857	381				-0.07146671019756923
MTGSSAPCK	9	Carbamidomethyl (C)	_MTGSSAPC(Carbamidomethyl (C))K_	MTGSSAPC(1)K		MTGSSAPC(60)K		0	1	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.707275390625	2	469.707145	937.399737	-1.2159	-0.0005711	1.0329	0.00048516	-0.18297	-8.5941E-05	469.7078092127914	14.806	0.070238	14.806	14.762	14.832	0					5	3	2	0	0	0	0.21263	1	3271	3271		60.118	20.865	1	51714			27488	9140	18594	18664	27858	27858	381				-0.07146671019756923
MTGSSAPCK	9	Carbamidomethyl (C)	_MTGSSAPC(Carbamidomethyl (C))K_	MTGSSAPC(1)K		MTGSSAPC(100)K		0	1	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7067565917969	2	469.707145	937.399737	0.61599	0.00028933	-1.9782	-0.00092918	-1.3622	-0.00063985	469.70650166201744	15.036	0.1701	15.036	14.977	15.147	0					9	3	3	0	0	0	0.035062	1	4044	4044		104.06	26.739	1	938890			27489	9140	18594	18664	27859	27859	381				-0.07146671019756923
MTGSSAPCK	9	Carbamidomethyl (C)	_MTGSSAPC(Carbamidomethyl (C))K_	MTGSSAPC(1)K		MTGSSAPC(65)K		0	1	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.70697021484375	2	469.707145	937.399737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.051	1	15.051	14.551	15.551	0								0	0	0	0.12601	1	3884	3884		65.465	12.529	1				27490	9140	18594	18664	27860	27860	381				-0.07146671019756923
MTGSSAPCK	9	Carbamidomethyl (C)	_MTGSSAPC(Carbamidomethyl (C))K_	MTGSSAPC(1)K		MTGSSAPC(51)K		0	1	0		ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	ENST00000392001.6_1_2:238499129-238499162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7068786621094	2	469.707145	937.399737	0.53337	0.00025053	-1.4001	-0.00065762	-0.86671	-0.0004071	469.70665288983196	15.055	0.16834	15.055	14.945	15.113	0					9	3	3	0	0	0	0.28897	1	3899	3899		51.193	6.6616	1	516600			27491	9140	18594	18664	27861	27861	381				-0.07146671019756923
MTGSSYHV	8	Unmodified	_MTGSSYHV_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.1965637207031	2	441.194728	880.374903	3.1334	0.0013824	0.18653	8.2296E-05	3.3199	0.0014647	441.1950395626653	15.768	0.20405	15.768	15.697	15.901	0					14	7	3	0	0	0	0.24777	1	3652	3652		105.27	4.0572	1	344500			27492	2639	18595	18665	27862	27862					-0.07006982830830566
MTHHLTKQ	8	Oxidation (M)	_M(Oxidation (M))THHLTKQ_		M(1)THHLTKQ		M(41)THHLTKQ	0	0	1		ENST00000599501.6_3_2:98292334-98305447:+|nuORF	ENST00000599501.6_3_2:98292334-98305447:+|nuORF	ENST00000599501.6_3_2:98292334-98305447:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.25555419921875	2	506.255651	1010.49675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.388	1	12.388	11.888	12.888	0								0	0	0	1.7419	1	2622	2622		40.778	10.275	1				27493	11023	18596	18666	27863	27863		428			-0.00807940748461533
MTHLGITAES	10	Unmodified	_MTHLGITAES_					0	0	0			REV__ENSG00000253710|ENST00000521508|ALG11	REV__ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2635498046875	2	530.260599	1058.50665	1.73	0.00091734	0.0069268	3.673E-06	1.7369	0.00092101	530.2605528110502	39.94	1.7595	39.94	39.05	40.809	0					190	65	4	0	0	0	0.61187	1	16015	16015		32.812	2.2436	1	1022300	+		27494	17736	18597	18667	27864	27864					-0.020267975337446842
MTHSEMRK	8	Unmodified	_MTHSEMRK_					0	0	0		ENST00000475846.6_3_6:135607593-135622557:-|nuORF;ENSG00000135541|ENST00000265602|AHI1	ENST00000475846.6_3_6:135607593-135622557:-|nuORF	ENST00000475846.6_3_6:135607593-135622557:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2417297363281	2	510.241686	1018.46882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.126	1	17.126	16.626	17.626	0								0	0	0	1.7419	1	4231	4231		47.916	0	1				27495	4001	18598	18668	27865	27865					-0.03967587000192907
MTHSFVMY	8	Oxidation (M)	_MTHSFVM(Oxidation (M))Y_		MTHSFVM(1)Y		M(-35)THSFVM(35)Y	0	0	1		sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1;sp|P16730|UL87_HCMVAProteinUL87OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL87PE=3SV=1	sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2218627929688	2	516.219888	1030.42522	1.1354	0.00058611	0.44388	0.00022914	1.5793	0.00081525	516.2200942923724	35.783	0.15551	35.783	35.696	35.851	0					9	5	2	0	0	0	0.4723	1	12757	12757		62.978	10.679	2	73259			27496	22467	18599	18669	27866	27866		812			-0.08877196497337536
MTIAAKRMR	9	Unmodified	_MTIAAKRMR_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.3031616210938	2	539.304621	1076.59469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.864	1	15.864	15.364	16.364	0								0	0	0	0.35737	1	3641	3641		10.866	0	1		+		27497	17341	18600	18670	27867	27867					0.05945544575888562
MTIDKNTK	8	Unmodified	_MTIDKNTK_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.I2584V|1|0.06|ENSG00000148773|chr10:128104090-128104090|T/C|missense_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7510986328125	2	475.75241	949.490267	-1.548	-0.00073646	-3.0369	-0.0014448	-4.5849	-0.0021813	475.7511556858513	42.9	0.092117	42.9	42.859	42.951	0					8	5	2	0	0	0	0.66095	1	14102	14102		39.253	2.0937	1	26290			27498	4850	18601	18671	27868	27868					0.013501213001518408
MTIPPRFS	8	Unmodified	_MTIPPRFS_					0	0	0		PLK1|p.L319M|1|0.23|ENSG00000166851|chr16:23684008-23684008|C/A|missense_variant	PLK1|p.L319M|1|0.23|ENSG00000166851|chr16:23684008-23684008|C/A|missense_variant	PLK1|p.L319M|1|0.23|ENSG00000166851|chr16:23684008-23684008|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7529296875	2	474.752213	947.489873	3.6275	0.0017222	-0.8567	-0.00040672	2.7708	0.0013155	474.7517699498672	37.338	0.24115	37.338	37.231	37.472	0					25	13	3	0	0	0	0.5676	1	12612	12612		53.351	53.351	1	159590			27499	11944	18602	18672	27869	27869					0.014027463709680887
MTKAVTVRGH	10	Unmodified	_MTKAVTVRGH_					0	0	0		ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	ENSG00000188162|ENST00000399397|OTOG	ENSG00000188162|ENST00000399397|OTOG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.3034057617188	2	550.305675	1098.5968	-0.33367	-0.00018362	-2.5613	-0.0014095	-2.895	-0.0015931	550.3039636989904	27.533	0.10023	27.533	27.485	27.585	0					6	3	2	0	0	0	0.43008	1	8780	8780		52.937	4.9772	1	61824			27500	7240	18603	18673	27870	27870					0.051442965853539135
MTKCDVTGGK	10	Unmodified	_MTKCDVTGGK_					0	0	0		ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2496948242188	2	520.249177	1038.4838	0.2578	0.00013412	-0.33349	-0.0001735	-0.075694	-3.938E-05	520.2493868027954	19.561	0.14221	19.561	19.484	19.626	0					9	4	3	0	0	0	0.081767	1	5323	5323		98.629	10.875	1	299260			27501	11234	18604	18674	27871	27871					-0.03390139922862545
MTKCDVTGGK	10	Unmodified	_MTKCDVTGGK_					0	0	0		ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2491455078125	2	520.249177	1038.4838	1.6831	0.00087562	-2.2171	-0.0011535	-0.53406	-0.00027784	520.2482653917001	19.767	0.36292	19.767	19.463	19.826	0					13	3	5	0	0	0	0.047644	1	6313	6313		110.12	10.745	1	3020700			27502	11234	18604	18674	27872	27872					-0.03390139922862545
MTKCDVTGGK	10	Unmodified	_MTKCDVTGGK_					0	0	0		ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7509765625	2	520.249177	1038.4838	1.0071	0.00052393	-0.40446	-0.00021042	0.60261	0.00031351	520.2489482654114	19.622	0.13747	19.622	19.535	19.673	0					6	3	2	0	0	0	0.21754	1	5357	5357		77.318	8.5308	1	342430			27503	11234	18604	18674	27873	27873					-0.03390139922862545
MTKCDVTGGK	10	Unmodified	_MTKCDVTGGK_					0	0	0		ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2491455078125	2	520.249177	1038.4838	1.6231	0.00084439	-2.1738	-0.0011309	-0.55075	-0.00028653	520.2483522975165	19.782	0.21981	19.782	19.673	19.893	0					13	4	4	0	0	0	0.11278	1	6185	6185		93.195	2.4188	1	2982100			27504	11234	18604	18674	27874	27874					-0.03390139922862545
MTKCDVTGGK	10	Unmodified	_MTKCDVTGGK_					0	0	0		ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	ITGB8|p.K437T|1|0.33|ENSG00000105855|chr7:20401749-20401749|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.249267578125	2	520.249177	1038.4838	3.3706	0.0017536	-3.3838	-0.0017604	-0.013232	-6.8838E-06	520.2477692287621	19.765	0.26897	19.765	19.607	19.876	0					10	5	3	0	0	0	0.31613	1	6181	6181		65.465	1.2581	1	865600			27505	11234	18604	18674	27875	27875					-0.03390139922862545
MTKEMQATR	9	Unmodified	_MTKEMQATR_					0	0	0			REV__CCDC102B|p.A85T|1|0.31|ENSG00000150636|chr18:68837016-68837016|G/A|missense_variant	REV__CCDC102B|p.A85T|1|0.31|ENSG00000150636|chr18:68837016-68837016|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.269775390625	2	548.267901	1094.52125	3.8166	0.0020925	-0.66662	-0.00036549	3.15	0.001727	548.2674168044181	39.412	0.77215	39.412	39.23	40.002	0					59	17	7	0	0	0	0.01768	1	15560	15560		125.81	24.561	1	15706000	+		27506	12349	18605	18675	27876	27876					-0.022230486572652808
MTKHPAKR	8	Unmodified	_MTKHPAKR_					0	0	0		PRKCA|p.E588Rfs*4|1|0.53|ENSG00000154229|chr17:66788883-66788883|G/-|frameshift_variant;ENSG00000154229|ENST00000413366|PRKCA	PRKCA|p.E588Rfs*4|1|0.53|ENSG00000154229|chr17:66788883-66788883|G/-|frameshift_variant	PRKCA|p.E588Rfs*4|1|0.53|ENSG00000154229|chr17:66788883-66788883|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.77386474609375	2	484.776554	967.538554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.175	1	34.175	33.675	34.675	0								0	0	0	1.7419	1	11161	11161		49.442	10.189	1				27507	5080	18606	18676	27877	27877					0.05348659730714189
MTKLLPWR	8	Unmodified	_MTKLLPWR_					0	0	0		ENST00000518696.5_1_8:121457418-121457517:-|nuORF	ENST00000518696.5_1_8:121457418-121457517:-|nuORF	ENST00000518696.5_1_8:121457418-121457517:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8065185546875	2	522.80478	1043.59501	3.4058	0.0017805	-0.20127	-0.00010522	3.2045	0.0016753	522.8047558639298	40.172	0.44914	40.172	39.943	40.392	0					15	10	2	0	0	0	0.41	1	15936	15936		69.628	1.1429	1	274250			27508	10281	18607	18677	27878	27878					0.07495287567371633
MTKPYSTIHF	10	Unmodified	_MTKPYSTIHF_					0	0	0		ENST00000563094.5_1_16:69200987-69201092:+|nuORF;ENST00000562237.5_1_16:69200987-69202772:+|nuORF	ENST00000563094.5_1_16:69200987-69201092:+|nuORF	ENST00000563094.5_1_16:69200987-69201092:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	612.8092041015625	2	612.807716	1223.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.641	1	37.641	37.141	38.141	0								0	0	0	0.40862	1	12719	12719		27.882	1.8189	1				27509	10718	18608	18678	27879	27879					-0.0019765871161325776
MTKVSNGVL	9	Oxidation (M)	_M(Oxidation (M))TKVSNGVL_		M(1)TKVSNGVL		M(61)TKVSNGVL	0	0	1			REV__NCAPG|p.L316Nfs*11|1|0.05|ENSG00000109805|chr4:17817429-17817430|-/CA|frameshift_variant	REV__NCAPG|p.L316Nfs*11|1|0.05|ENSG00000109805|chr4:17817429-17817430|-/CA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.75860595703125	2	482.760235	963.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.329	1	39.329	38.829	39.829	0								0	0	0	0.14517	1	15463	15463		60.972	7.6205	1		+		27510	21276	18609	18679	27880	27880		765			0.022704078172182562
MTLCLSYFS	9	Unmodified	_MTLCLSYFS_					0	0	0			REV__nc|ENSG00000082175|P06401-4|PGR	REV__nc|ENSG00000082175|P06401-4|PGR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2908325195312	2	532.743196	1063.47184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.656	1	35.656	35.156	36.156	0								0	0	0	0.23459	1	11685	11685		45.952	5.3793	1		+		27511	13313	18610	18680	27881	27881					-0.05735756666058478
MTLEYNSKY	9	Unmodified	_MTLEYNSKY_					0	0	0		PPP1R32|p.S177L|1|0.32|ENSG00000162148|chr11:61485357-61485357|C/T|missense_variant	PPP1R32|p.S177L|1|0.32|ENSG00000162148|chr11:61485357-61485357|C/T|missense_variant	PPP1R32|p.S177L|1|0.32|ENSG00000162148|chr11:61485357-61485357|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.7694091796875	2	574.768257	1147.52196	1.0307	0.00059242	0.00042119	2.4209E-07	1.0311	0.00059267	574.7683639300938	28.85	0.18898	28.85	28.723	28.912	0					9	6	2	0	0	0	0.42902	1	9011	9011		39.253	0	1	80866			27512	11958	18611	18681	27882	27882					-0.045899307365516506
MTLIVIMF	8	Unmodified	_MTLIVIMF_					0	0	0			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2713623046875	2	484.271393	966.528232	2.4519	0.0011874	-1.9602	-0.00094927	0.49168	0.00023811	484.27040679354116	41.769	0.54781	41.769	41.622	42.17	0					34	15	3	0	0	0	0.60719	1	16614	16614		28.254	0	1	370530	+		27513	21105	18612	18682	27883	27883					0.04362915961280578
MTLLTYELR	9	Unmodified	_MTLLTYELR_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;TRPM6|p.E1956Kfs*25|1|0.33|ENSG00000119121|chr9:74728308-74728308|C/-|frameshift_variant;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.308837890625	2	570.310092	1138.60563	0.096989	5.5314E-05	-1.893	-0.0010796	-1.796	-0.0010243	570.3085816670153	32.019	0.13959	32.019	31.959	32.098	0					12	5	3	0	0	0	0.2873	1	10668	10668		51.335	0	1	81362			27514	3097	18613	18683	27884	27884					0.04187225431155639
MTLVSSPLPVG	11	Unmodified	_MTLVSSPLPVG_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2;ADNP2|p.P500Qfs*7|1|0.18|ENSG00000101544|chr18:80136908-80136908|C/-|frameshift_variant;ADNP2|p.P628Lfs*39|1|0.11|ENSG00000101544|chr18:80137292-80137292|C/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.5379333496094	3	367.538854	1099.59473	0.47197	0.00017347	-3.3569	-0.0012338	-2.885	-0.0010603	367.5376892728296	19.819	0.13353	19.819	19.735	19.869	0					7	3	3	0	0	0	0.72624	1	6057	6057		25.126	2.5463	1	722760			27515	83	18614	18684	27885	27885					0.04891823056868816
MTMDKSELVQK	11	Unmodified	_MTMDKSELVQK_					0	0	0		ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2210388183594	3	437.221196	1308.64176	-0.40947	-0.00017903	-0.61644	-0.00026952	-1.0259	-0.00044855	437.2210845719172	25.723	0.16438	25.723	25.653	25.817	0					4	2	2	0	0	0	0.33569	1	9172	9172		58.63	13.99	1	132760			27516	5946	18615	18685	27886	27886					-0.00021685454316866526
MTMDRPLSH	9	Unmodified	_MTMDRPLSH_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2553100585938	2	544.254794	1086.49503	1.8081	0.00098409	-0.7403	-0.00040291	1.0678	0.00058117	544.2543073410739	24.759	0.11406	24.759	24.653	24.768	0					5	3	2	0	0	0	0.10506	1	7348	7348		78.264	18.146	1	96775			27517	7116	18616	18686	27887	27887					-0.04475317828723746
MTMDRPLSH	9	Unmodified	_MTMDRPLSH_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2553100585938	2	544.254794	1086.49503	1.8741	0.00102	-1.5594	-0.00084872	0.31466	0.00017126	544.2542079005473	24.986	0.30659	24.986	24.902	25.209	0					18	7	4	0	0	0	0.032383	1	8490	8490		106.68	47.901	1	689460			27518	7116	18616	18686	27888	27888					-0.04475317828723746
MTMDRPLSH	9	Unmodified	_MTMDRPLSH_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2555541992188	2	544.254794	1086.49503	1.0927	0.00059469	-0.10475	-5.701E-05	0.98792	0.00053768	544.2549917863743	24.819	0.14945	24.819	24.771	24.92	0					5	3	2	0	0	0	0.085655	1	7811	7811		82.75	26.029	1	86844			27519	7116	18616	18686	27889	27889					-0.04475317828723746
MTMDRPLSH	9	Unmodified	_MTMDRPLSH_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.255126953125	2	544.254794	1086.49503	1.9782	0.0010767	-1.7359	-0.00094476	0.24234	0.0001319	544.2541655865384	24.906	0.25554	24.906	24.805	25.06	0					16	5	4	0	0	0	0.013878	1	8666	8666		132.76	45.004	1	706050			27520	7116	18616	18686	27890	27890					-0.04475317828723746
MTMELAAGLW	10	Unmodified	_MTMELAAGLW_					0	0	0			REV__ENST00000394283.5_1_6:41700498-41700744:-|nuORF	REV__ENST00000394283.5_1_6:41700498-41700744:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.767822265625	2	561.769745	1121.52494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.188	1	36.188	35.688	36.688	0								0	0	0	0.28441	1	11871	11871		53.351	11.925	1		+		27521	18860	18617	18687	27891	27891					-0.03096378883401485
MTPAAPLLPLP	11	Unmodified	_MTPAAPLLPLP_					0	0	0			REV__ENST00000587535.3_1_19:14492251-14508118:+|nuORF	REV__ENST00000587535.3_1_19:14492251-14508118:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8258056640625	2	560.825378	1119.6362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.58	1	33.58	33.08	34.08	0								0	0	0	0.43372	1	12864	12864		34.173	5.023	1		+		27522	20494	18618	18688	27892	27892					0.08117003816209944
MTPTEKKQ	8	Unmodified	_MTPTEKKQ_					0	0	0		ENSG00000177692|ENST00000381947|DNAJC28	ENSG00000177692|ENST00000381947|DNAJC28	ENSG00000177692|ENST00000381947|DNAJC28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.75201416015625	2	481.75241	961.490267	-0.54479	-0.00026245	0.10783	5.1949E-05	-0.43696	-0.00021051	481.7523729421134	22.986	0.21622	22.986	22.878	23.095	0					7	4	2	0	0	0	0.68432	1	7869	7869		35.618	0	1	227900			27523	6683	18619	18689	27893	27893					0.007981213001698961
MTPVLLQYPP	10	Unmodified	_MTPVLLQYPP_					0	0	0		ENST00000533077.5_1_11:67051156-67051456:+|nuORF	ENST00000533077.5_1_11:67051156-67051456:+|nuORF	ENST00000533077.5_1_11:67051156-67051456:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.8165893554688	2	579.81501	1157.61547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.055	1	43.055	42.555	43.555	0								0	0	0	0.4201	1	16868	16868		23.523	0.48021	1				27524	10458	18620	18690	27894	27894					0.042964134365320206
MTQIARLP	8	Unmodified	_MTQIARLP_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2671203613281	2	465.265487	928.516422	-0.43955	-0.00020451	0.94121	0.00043791	0.50166	0.00023341	465.2659239831525	29.694	0.51501	29.694	29.413	29.928	0					50	19	3	0	0	0	0.57802	1	9442	9442		52.299	0	1	404120	+		27525	15258	18621	18691	27895	27895					0.04930435262303945
MTRGRLRVG	9	Unmodified	_MTRGRLRVG_					0	0	0			REV__ENST00000586568.1_1_18:47809883-47810144:-|nuORF	REV__ENST00000586568.1_1_18:47809883-47810144:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3065185546875	2	523.30601	1044.59747	0.08863	4.638E-05	0.44762	0.00023424	0.53625	0.00028062	523.3062857509776	39.544	0.57367	39.544	39.391	39.964	0					59	22	4	0	0	0	0.4966	1	15068	15068		32.812	2.3088	1	816280	+		27526	20485	18622	18692	27896	27896					0.07695136025040483
MTRPYPPLFP	10	Unmodified	_MTRPYPPLFP_					0	0	0		ENST00000484003.1_1_6:32810760-32812105:-|nuORF	ENST00000484003.1_1_6:32810760-32812105:-|nuORF	ENST00000484003.1_1_6:32810760-32812105:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.8226318359375	2	609.820627	1217.6267	0.49684	0.00030298	0.61991	0.00037803	1.1168	0.00068102	609.8214838431145	27.642	0.40865	27.642	27.338	27.747	0					18	8	3	0	0	0	0.48965	1	10001	10001		26.693	0	1	238810			27527	9987	18623	18693	27897	27897					0.026592355306547688
MTRTGYFLA	9	Unmodified	_MTRTGYFLA_					0	0	0			REV__ENST00000366516.5_1_1:245912867-246093251:-|nuORF	REV__ENST00000366516.5_1_1:245912867-246093251:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2675170898438	2	530.268227	1058.5219	1.1199	0.00059385	-3.7462	-0.0019865	-2.6263	-0.0013926	530.2666231055811	20.818	0.10731	20.818	20.731	20.838	0					10	4	3	0	0	0	0.54267	1	5636	5636		27.882	2.4321	1	69257	+		27528	17025	18624	18694	27898	27898					-0.005018859458914449
MTSGMGMGTQ	10	Unmodified	_MTSGMGMGTQ_					0	0	0			REV__ENSG00000197901|ENST00000360421|SLC22A6	REV__ENSG00000197901|ENST00000360421|SLC22A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.69818115234375	2	500.698463	999.382373	0.91747	0.00045938	-2.0643	-0.0010336	-1.1468	-0.0005742	500.69766531178647	13.88	0.3111	13.88	13.778	14.09	0					13	6	3	0	0	0	0.36476	1	3490	3490		60.118	3.3972	1	1730900	+		27529	17365	18625	18695	27899	27899					-0.11734334617074182
MTSGMGMGTQ	10	Unmodified	_MTSGMGMGTQ_					0	0	0			REV__ENSG00000197901|ENST00000360421|SLC22A6	REV__ENSG00000197901|ENST00000360421|SLC22A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.69842529296875	2	500.698463	999.382373	2.9224	0.0014633	-4.4144	-0.0022103	-1.492	-0.00074705	500.696947561521	13.889	0.30504	13.889	13.783	14.088	0					15	6	4	0	0	0	0.32758	1	3319	3319		64.207	0	1	546060	+		27530	17365	18625	18695	27900	27900					-0.11734334617074182
MTSIFIAQHE	10	Unmodified	_MTSIFIAQHE_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7908935546875	2	588.789524	1175.56449	1.4636	0.00086177	0.77167	0.00045435	2.2353	0.0013161	588.7906897685314	42.141	0.45171	42.141	41.954	42.406	0					52	21	3	0	0	0	0.31894	1	16528	16528		62.107	20.681	1	246550			27531	1218	18626	18696	27901	27901					-0.016265356083067672
MTSLKVSSV	9	Unmodified	_MTSLKVSSV_					0	0	0			REV__ENSG00000197471|ENST00000652691|SPN	REV__ENSG00000197471|ENST00000652691|SPN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.26214599609375	2	476.26261	950.510668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.963	1	27.963	27.463	28.463	0								0	0	0	0.29356	1	9831	9831		36.447	1.2947	1		+		27532	17336	18627	18697	27902	27902					0.03343291959970429
MTSLTERSF	9	Unmodified	_MTSLTERSF_					0	0	0		ENST00000556709.1_1_14:65494301-65494447:+|nuORF	ENST00000556709.1_1_14:65494301-65494447:+|nuORF	ENST00000556709.1_1_14:65494301-65494447:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2603149414062	2	536.260599	1070.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.664	1	40.664	40.164	41.164	0								0	0	0	0.28191	1	16027	16027		31.53	0	1				27533	10667	18628	18698	27903	27903					-0.025787975337379976
MTSQFADNV	9	Unmodified	_MTSQFADNV_					0	0	0		ENST00000409785.8_1_2:85280528-85280699:+|nuORF	ENST00000409785.8_1_2:85280528-85280699:+|nuORF	ENST00000409785.8_1_2:85280528-85280699:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7237243652344	2	506.723849	1011.43315	1.2691	0.00064308	-1.6837	-0.00085316	-0.41458	-0.00021008	506.72307068071507	34.53	0.30795	34.53	34.376	34.684	0					9	6	2	0	0	0	0.28897	1	13259	13259		51.193	5.2407	1	448950			27534	9302	18629	18699	27904	27904					-0.07211345976213579
MTSSAALLK	9	Unmodified	_MTSSAALLK_					0	0	0		nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2568664550781	2	461.257328	920.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.96	1	26.96	26.46	27.46	0								0	0	0	0.35899	1	8256	8256		23.042	0	1				27535	4975	18630	18700	27905	27905					0.03667309305546951
MTSTMTIGK	9	Unmodified	_MTSTMTIGK_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.24017333984375	2	485.240821	968.467088	-0.012279	-5.9585E-06	-0.87609	-0.00042511	-0.88837	-0.00043107	485.2406811661433	25.474	0.15225	25.474	25.416	25.568	0					16	6	3	0	0	0	0.22837	1	7656	7656		58.23	14.113	1	187030			27536	3741	18631	18701	27906	27906					-0.018406408088026183
MTSTMTIGK	9	Unmodified	_MTSTMTIGK_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.24041748046875	2	485.240821	968.467088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.735	1	25.735	25.235	26.235	0								0	0	0	0.029874	1	9170	9170		95.815	29.386	1				27537	3741	18631	18701	27907	27907					-0.018406408088026183
MTSTMTIGK	9	Unmodified	_MTSTMTIGK_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2405090332031	2	485.240821	968.467088	0.33159	0.0001609	-1.0924	-0.00053007	-0.7608	-0.00036917	485.2402401343502	25.554	0.18211	25.554	25.488	25.67	0					10	5	3	0	0	0	0.085655	1	8149	8149		82.75	24.939	1	138880			27538	3741	18631	18701	27908	27908					-0.018406408088026183
MTSTMTIGK	9	Unmodified	_MTSTMTIGK_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2406311035156	2	485.240821	968.467088	-0.56812	-0.00027568	-0.35587	-0.00017268	-0.92399	-0.00044836	485.2409325730387	25.676	0.301	25.676	25.565	25.866	0					12	4	4	0	0	0	0.0049871	1	9029	9029		158.07	73.159	1	1732100			27539	3741	18631	18701	27909	27909					-0.018406408088026183
MTTMPGKASPV	11	Oxidation (M)	_M(Oxidation (M))TTMPGKASPV_		M(1)TTMPGKASPV		M(38)TTM(-38)PGKASPV	0	0	1			REV__ENST00000463465.1_1_1:43223571-43224973:-|nuORF	REV__ENST00000463465.1_1_1:43223571-43224973:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.280029296875	2	568.277934	1134.54132	3.4671	0.0019703	0.12132	6.8944E-05	3.5884	0.0020392	568.2780747539781	20.768	0.2191	20.768	20.609	20.828	0					7	4	2	0	0	0	0.17474	1	6663	6663		77.318	16.346	2	1212900	+		27540	19397	18632	18702	27910	27910		713			-0.020572977172832907
MTVFRMAR	8	Unmodified	_MTVFRMAR_					0	0	0		ENSG00000142511|ENST00000270590|GPR32	ENSG00000142511|ENST00000270590|GPR32	ENSG00000142511|ENST00000270590|GPR32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.2642822265625	2	506.264964	1010.51538	-0.70601	-0.00035743	-0.39096	-0.00019793	-1.097	-0.00055536	506.264836710212	37.064	0.20358	37.064	36.965	37.168	0					26	11	3	0	0	0	0.66372	1	12532	12532		38.806	1.647	1	338560			27541	4495	18633	18703	27911	27911					0.01053897621750366
MTVGFIDYGQ	10	Unmodified	_MTVGFIDYGQ_					0	0	0			REV__tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	REV__tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.76123046875	2	565.762975	1129.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.229	1	22.229	21.729	22.729	0								0	0	0	0.4201	1	6251	6251		19.104	0.57247	1		+		27542	21903	18634	18704	27912	27912					-0.04817913390979811
MTVKMGIDE	9	Unmodified	_MTVKMGIDE_					0	0	0			REV__tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	REV__tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2464599609375	2	512.246103	1022.47765	1.1915	0.00061034	-0.42109	-0.0002157	0.77041	0.00039464	512.2461760795187	34.399	0.19743	34.399	34.324	34.521	0					20	9	3	0	0	0	0.3269	1	11233	11233		47.96	2.9373	1	209600	+		27543	22225	18635	18705	27913	27913					-0.032686581543771354
MTVLWDPTK	9	Unmodified	_MTVLWDPTK_					0	0	0			REV__nc|ENSG00000164334|A1A519-3|FAM170A	REV__nc|ENSG00000164334|A1A519-3|FAM170A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7825317382812	2	545.78371	1089.55287	-1.499	-0.00081816	-0.45748	-0.00024968	-1.9565	-0.0010678	545.783570468707	45.915	0.51701	45.915	45.566	46.083	0					55	31	3	0	0	0	0.45358	1	15551	15551		37.159	1.5408	1	174620	+		27544	15987	18636	18706	27914	27914					0.011672673683278845
MTVMEAVD	8	2 Oxidation (M)	_M(Oxidation (M))TVM(Oxidation (M))EAVD_		M(1)TVM(1)EAVD		M(51)TVM(51)EAVD	0	0	2		nc|ENSG00000100253|Q9UGB7-2|MIOX;ENSG00000100253|ENST00000216075|MIOX	nc|ENSG00000100253|Q9UGB7-2|MIOX	nc|ENSG00000100253|Q9UGB7-2|MIOX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.1934509277344	2	464.193536	926.372519	0.72895	0.00033837	-0.72835	-0.0003381	0.00059176	2.7469E-07	464.19317850591614	18.661	0.98678	18.661	18.506	19.492	0					46	20	4	0	0	0	0.58597	1	5592	5592		51.335	8.861	1	5871900			27545	1990	18637	18707	27915	27915		92;93			-0.09361199350814786
MTWRLAAT	8	Unmodified	_MTWRLAAT_					0	0	0		ENST00000370490.1_1_X:144903534-144903729:+|nuORF	ENST00000370490.1_1_X:144903534-144903729:+|nuORF	ENST00000370490.1_1_X:144903534-144903729:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.249267578125	2	475.249837	948.485122	-1.5678	-0.00074509	1.1919	0.00056643	-0.37593	-0.00017866	475.25049615402884	32.828	0.30595	32.828	32.657	32.963	0					18	11	2	0	0	0	0.63077	1	10975	10975		44.117	3.3386	1	88263			27546	8953	18638	18708	27916	27916					0.008818622281751232
MTYAGNGFMVV	11	Unmodified	_MTYAGNGFMVV_					0	0	0			REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant	REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.2745971679688	2	595.272652	1188.53075	0.18988	0.00011303	3.5985	0.0021421	3.7884	0.0022551	595.7762995671197	31.041	0.17992	31.041	30.944	31.124	0					7	4	2	0	0	0	0.62108	1	11248	11248		35.152	6.0025	1	402260	+		27547	16383	18639	18709	27917	27917					-0.05597280371716806
MTYVKKGYK	9	Unmodified	_MTYVKKGYK_					0	0	0			REV__tr|U7SKZ9|U7SKZ9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02010PE=4SV=1	REV__tr|U7SKZ9|U7SKZ9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02010PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098083496094	3	373.207327	1116.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.408	1	44.408	43.908	44.908	0								0	0	0	0.3428	1	17790	17790		26.693	0	1		+		27548	21762	18640	18710	27918	27918					0.046515466393657334
MVAAAPVAVA	10	Unmodified	_MVAAAPVAVA_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2552185058594	2	450.254588	898.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.458	1	20.458	19.958	20.958	0								0	0	0	0.41219	1	5479	5479		26.796	0	1				27549	3459	18641	18711	27919	27919					0.04131630513722939
MVAAGALASL	10	Unmodified	_MVAAGALASL_					0	0	0		ISLR|p.T88M|2|0.18|ENSG00000129009|chr15:74175121-74175121|C/T|missense_variant	ISLR|p.T88M|2|0.18|ENSG00000129009|chr15:74175121-74175121|C/T|missense_variant	ISLR|p.T88M|2|0.18|ENSG00000129009|chr15:74175121-74175121|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2520446777344	2	452.252046	902.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.634	1	35.634	35.134	36.134	0								0	0	0	0.39525	1	13378	13378		31.955	0	1				27550	11229	18642	18712	27920	27920					0.03439326651096053
MVADTFGILL	10	Unmodified	_MVADTFGILL_					0	0	0		ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant;ZBTB24|p.V168Sfs*19|1|0.27|ENSG00000112365|chr6:109481526-109481526|T/-|frameshift_variant;nc|ENSG00000112365|O43167-2|ZBTB24;ZBTB24|p.Q553Sfs*10|1|0.12|ENSG00000112365|chr6:109466288-109466289|-/A|frameshift_variant;ENSG00000112365|ENST00000230122|ZBTB24	ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant	ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2959594726562	2	540.293911	1078.57327	0.30688	0.00016581	3.2066	0.0017325	3.5135	0.0018983	540.295705928197	29.138	0.33881	29.138	28.944	29.282	0					12	7	2	0	0	0	0.58896	1	10769	10769		35.618	1.4457	1	84057			27551	23127	18643	18713	27921	27921					0.03712438028173892
MVALIIKRE	9	Unmodified	_MVALIIKRE_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.833984375	2	536.830995	1071.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.486	1	34.486	33.986	34.986	0								0	0	0	0.31623	1	12850	12850		31.955	1.4512	1		+		27552	21128	18644	18714	27922	27922					0.11447825910340725
MVALVLPNY	9	Unmodified	_MVALVLPNY_					0	0	0		PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.28118896484375	2	510.283346	1018.55214	1.1928	0.00060865	-1.653	-0.0008435	-0.46024	-0.00023485	510.28218397835894	40.671	0.24403	40.671	40.565	40.809	0					14	10	2	0	0	0	0.30268	1	16024	16024		50.025	0.81375	1	65558			27553	6755	18645	18715	27923	27923					0.043604727192928294
MVANLLYEK	9	Unmodified	_MVANLLYEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.792236328125	2	540.791535	1079.56852	1.9113	0.0010336	-0.86919	-0.00047005	1.0421	0.00056355	540.7912489538452	37.75	0.2642	37.75	37.669	37.933	0					14	9	2	0	0	0	0.070005	1	14338	14338		88.177	35.24	1	184130			27554	8120	18646	18716	27924	27924					0.03191553885380927
MVANLLYEK	9	Unmodified	_MVANLLYEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7914428710938	2	540.791535	1079.56852	2.082	0.0011259	-2.941	-0.0015905	-0.85905	-0.00046456	540.7906271802289	37.648	0.45255	37.648	37.4	37.852	0					15	9	2	0	0	0	0.13726	1	14730	14730		70.816	0	1	532520			27555	8120	18646	18716	27925	27925					0.03191553885380927
MVAPAVQEK	9	Unmodified	_MVAPAVQEK_					0	0	0		ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7628173828125	2	486.762778	971.511002	-0.54447	-0.00026503	-0.71539	-0.00034822	-1.2599	-0.00061325	486.76300934402764	23.617	0.41146	23.617	23.335	23.747	0					18	8	3	0	0	0	0.18416	1	8010	8010		39.253	0	1	313300			27556	6421	18647	18717	27926	27926					0.024107116798290917
MVASQAYNLT	10	Unmodified	_MVASQAYNLT_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000541836.5_1_16:15021147-15029115:+|nuORF;ENST00000415938.7_1_16:2152605-2162466:-|nuORF;ENST00000483731.5_1_16:2153201-2162466:-|nuORF;ENST00000343738.10_1_16:15225298-15225511:-|nuORF;ENST00000339303.5_16:18434460-18437593:-|nuORF;ENST00000561991.5_1_16:2153598-2156273:-|nuORF	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2685546875	2	549.268424	1096.5223	1.2614	0.00069284	-0.98518	-0.00054113	0.2762	0.00015171	549.2676554179775	32.831	0.086952	32.831	32.798	32.885	0					6	3	2	0	0	0	0.59277	1	10646	10646		35.152	2.4015	1	47165			27557	1020	18648	18718	27927	27927					-0.022105110167103703
MVCSINQHR	9	Unmodified	_MVCSINQHR_					0	0	0			REV__ENST00000261497.8_1_17:20905954-20906125:-|nuORF	REV__ENST00000261497.8_1_17:20905954-20906125:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2598266601562	2	544.26041	1086.50627	0.43325	0.0002358	0.8484	0.00046175	1.2817	0.00069755	544.2608686970399	42.451	0.29026	42.451	42.349	42.639	0					29	17	2	0	0	0	0.54267	1	13979	13979		27.882	0	1	96175	+		27558	18017	18649	18719	27928	27928					-0.03352495734566219
MVCTDSREQKL	11	Unmodified	_MVCTDSREQKL_					0	0	0		MLH1|p.R385C|1|0.18|ENSG00000076242|chr3:37025751-37025751|C/T|missense_variant	MLH1|p.R385C|1|0.18|ENSG00000076242|chr3:37025751-37025751|C/T|missense_variant	MLH1|p.R385C|1|0.18|ENSG00000076242|chr3:37025751-37025751|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	655.316162109375	2	655.31558	1308.61661	-0.0095079	-6.2307E-06	0.85414	0.00055973	0.84464	0.0005535	655.3162161127032	14.772	0.2201	14.772	14.682	14.902	0					7	5	2	0	0	0	0.75295	1	3681	3681		22.58	0.89391	1	580590			27559	11369	18650	18720	27929	27929					-0.02535740256871577
MVCTSKLLVD	10	Carbamidomethyl (C)	_MVC(Carbamidomethyl (C))TSKLLVD_	MVC(1)TSKLLVD		MVC(65)TSKLLVD		0	1	0			REV__MYO1G|p.L145M|1|0.35|ENSG00000136286|chr7:44975615-44975615|G/T|missense_variant	REV__MYO1G|p.L145M|1|0.35|ENSG00000136286|chr7:44975615-44975615|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.3038330078125	2	583.30141	1164.58827	3.2249	0.0018811	1.6509	0.00096296	4.8758	0.0028441	583.3024663957864	37.829	0.57698	37.829	37.674	38.251	0					24	12	4	0	0	0	0.31613	1	14811	14811		65.465	31.293	1	680490	+		27560	20912	18651	18721	27930	27930	719				0.012555618338410568
MVDRYLKMQ	9	Unmodified	_MVDRYLKMQ_					0	0	0			REV__ZNF227|p.R45M|1|0.1|ENSG00000131115|chr19:44228519-44228519|G/T|missense_variant	REV__ZNF227|p.R45M|1|0.1|ENSG00000131115|chr19:44228519-44228519|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.8035278320312	2	592.301744	1182.58893	-1.7896	-0.00106	1.2055	0.00071404	-0.58406	-0.00034594	592.3028312417779	34.618	0.50651	34.618	34.48	34.986	0					26	16	3	0	0	0	0.33044	1	12249	12249		47.657	10.498	1	169710	+		27561	22315	18652	18722	27931	27931					0.004944012735677461
MVEARTLR	8	Unmodified	_MVEARTLR_					0	0	0		PPP2R5D|p.K13Rfs*94|2|0.35|ENSG00000112640|chr6:42989614-42989614|C/-|frameshift_variant	PPP2R5D|p.K13Rfs*94|2|0.35|ENSG00000112640|chr6:42989614-42989614|C/-|frameshift_variant	PPP2R5D|p.K13Rfs*94|2|0.35|ENSG00000112640|chr6:42989614-42989614|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2711486816406	2	488.273844	974.533135	-1.2483	-0.00060949	-2.709	-0.0013227	-3.9572	-0.0019322	488.2722722714672	32.671	0.17961	32.671	32.592	32.772	0					12	7	2	0	0	0	0.5676	1	10917	10917		53.351	1.0523	1	70125			27562	11963	18653	18723	27932	27932					0.04484936148253382
MVELHNLYR	9	Unmodified	_MVELHNLYR_					0	0	0		ENSG00000164530|ENST00000373674|PI16;nc|ENSG00000164530|Q6UXB8-2|PI16	ENSG00000164530|ENST00000373674|PI16	ENSG00000164530|ENST00000373674|PI16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.8068237304688	2	587.805508	1173.59646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.334	1	29.334	28.834	29.834	0								0	0	0	0.3304	1	10850	10850		29.15	1.2673	1				27563	5701	18654	18724	27933	27933					0.016608768654805317
MVENYPTALR	10	Unmodified	_MVENYPTALR_					0	0	0		ENSG00000204052|ENST00000372441|LRRC73	ENSG00000204052|ENST00000372441|LRRC73	ENSG00000204052|ENST00000372441|LRRC73	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.3023071289062	2	597.302798	1192.59104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.24	1	38.24	37.74	38.74	0								0	0	0	0.32313	1	15020	15020		42.864	0.46813	1				27564	7668	18655	18725	27934	27934					0.0024515328298093664
MVERQFPV	8	Unmodified	_MVERQFPV_					0	0	0			REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.26422119140625	2	503.262945	1004.51134	1.1746	0.00059112	1.1729	0.0005903	2.3475	0.0011814	503.2636060107096	27.951	0.41502	27.951	27.846	28.261	0					16	8	3	0	0	0	0.65148	1	10078	10078		40.778	40.778	1	2199700	+		27565	22215	18656	18726	27935	27935					0.00926131399694441
MVFGHVLI	8	Unmodified	_MVFGHVLI_					0	0	0		ENST00000552401.5_2_6:90572044-90572224:+|nuORF	ENST00000552401.5_2_6:90572044-90572224:+|nuORF	ENST00000552401.5_2_6:90572044-90572224:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2606201171875	2	458.259674	914.504795	-0.40914	-0.00018749	1.5761	0.00072228	1.167	0.00053479	458.2607626884467	31.685	0.083889	31.685	31.629	31.713	0					6	4	2	0	0	0	0.70073	1	10203	10203		33.493	8.989	1	52450			27566	10631	18657	18727	27936	27936					0.044122382389673476
MVFILFRG	8	Unmodified	_MVFILFRG_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7817687988281	2	491.780773	981.546994	2.7117	0.0013335	-0.91213	-0.00044857	1.7995	0.00088497	491.78033916594455	35.458	0.37336	35.458	35.347	35.721	0					16	7	3	0	0	0	0.67475	1	13699	13699		37.028	37.028	1	2920400	+		27567	13878	18658	18728	27937	27937					0.05548213647341527
MVFRDFLP	8	Unmodified	_MVFRDFLP_					0	0	0		ENST00000272227.7_1_2:10933301-10937275:-|nuORF	ENST00000272227.7_1_2:10933301-10937275:-|nuORF	ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7691650390625	2	512.767863	1023.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.314	1	28.314	27.814	28.814	0								0	0	0	1.7419	1	9381	9381		37.159	18.835	1				27568	8383	18659	18729	27938	27938					0.010353194050480852
MVFRQRAGK	9	Unmodified	_MVFRQRAGK_					0	0	0		ENST00000461745.5_2_3:77089448-77089580:+|nuORF	ENST00000461745.5_2_3:77089448-77089580:+|nuORF	ENST00000461745.5_2_3:77089448-77089580:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.8095092773438	2	546.808385	1091.60222	3.8023	0.0020791	-2.3439	-0.0012817	1.4584	0.00079745	546.8077463866458	48.657	0.082031	48.657	48.585	48.668	0					6	4	2	0	0	0	0.47038	1	19319	19319		35.618	2.1027	1	41577			27569	9735	18660	18730	27939	27939					0.060080201678147205
MVGKTFTY	8	Unmodified	_MVGKTFTY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7389221191406	2	473.738771	945.462989	0.93482	0.00044286	-0.84135	-0.00039858	0.09347	4.428E-05	473.7382399877801	31.884	0.17609	31.884	31.8	31.976	0					9	6	2	0	0	0	0.77246	1	10286	10286		24.203	4.8428	1	88478			27570	925	18661	18731	27940	27940					-0.0119236224022643
MVGKTFTY	8	Unmodified	_MVGKTFTY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7386779785156	2	473.738771	945.462989	0.68863	0.00032623	-1.1605	-0.00054975	-0.47183	-0.00022352	473.7382697932476	32.119	0.25954	32.119	32.031	32.291	0					13	6	3	0	0	0	0.29286	1	11751	11751		84.916	46.109	1	706280			27571	925	18661	18731	27941	27941					-0.0119236224022643
MVGKTFTY	8	Unmodified	_MVGKTFTY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7383728027344	2	473.738771	945.462989	-0.1215	-5.7562E-05	-0.50906	-0.00024116	-0.63057	-0.00029873	473.7386181248372	32.1	0.34133	32.1	32.001	32.343	0					14	7	3	0	0	0	0.2451	1	12178	12178		110.12	62.204	1	694800			27572	925	18661	18731	27942	27942					-0.0119236224022643
MVGKTFTY	8	Oxidation (M)	_M(Oxidation (M))VGKTFTY_		M(1)VGKTFTY		M(63)VGKTFTY	0	0	1		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7367858886719	2	481.736228	961.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.407	1	29.407	28.907	29.907	0								0	0	0	1.7419	1	10499	10499		63.306	29.791	1				27573	925	18661	18732	27943	27943		42			-0.02436666102835261
MVGKVWGFR	9	Unmodified	_MVGKVWGFR_					0	0	0			REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant;REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2963256835938	2	540.294579	1078.57461	3.4794	0.0018799	-2.4366	-0.0013165	1.0428	0.00056339	540.2945107234294	36.79	0.60678	36.79	36.496	37.103	0					34	12	4	0	0	0	0.099922	1	14346	14346		79.451	5.4763	1	923650	+		27574	21521;13181	18662	18733	27944	27944					0.03846116907584474
MVGLREEEE	9	Unmodified	_MVGLREEEE_					0	0	0			REV__ENST00000377548.2_1_9:44870104-44870314:+|nuORF	REV__ENST00000377548.2_1_9:44870104-44870314:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2540893554688	2	546.255514	1090.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.103	1	35.103	34.603	35.603	0								0	0	0	0.28996	1	13521	13521		37.159	2.9866	1		+		27575	18733	18663	18734	27945	27945					-0.04515405258962346
MVHLWSMN	8	Oxidation (M)	_MVHLWSM(Oxidation (M))N_		MVHLWSM(1)N		M(-43)VHLWSM(43)N	0	0	1			REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2321166992188	2	517.23333	1032.45211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.578	1	30.578	30.078	31.078	0								0	0	0	1.7419	1	10431	10431		44.531	7.5026	2		+		27576	15231	18664	18735	27946	27946		581			-0.06282087886165755
MVHNHLGVT	9	Unmodified	_MVHNHLGVT_					0	0	0		PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;ENSG00000070159|ENST00000374541|PTPN3	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.26007080078125	2	504.258194	1006.50183	3.647	0.001839	-0.35897	-0.00018101	3.288	0.001658	504.2576536195041	25.292	0.16064	25.292	25.231	25.392	0					8	5	2	0	0	0	0.61124	1	7859	7859		12.959	0	1	65421			27577	1445	18665	18736	27947	27947					-0.0011563688583464682
MVHSKLLFF	9	Unmodified	_MVHSKLLFF_					0	0	0			REV__ENST00000256544.7_2_15:34434362-34434515:-|nuORF	REV__ENST00000256544.7_2_15:34434362-34434515:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.3120727539062	2	561.312438	1120.61032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.955	1	34.955	34.455	35.455	0								0	0	0	0.34845	1	11448	11448		12.207	0	1		+		27578	17982	18666	18737	27948	27948					0.05484154364603455
MVHTVLKLE	9	Unmodified	_MVHTVLKLE_					0	0	0		ENST00000417455.1_1_10:44101451-44101670:-|nuORF	ENST00000417455.1_1_10:44101451-44101670:-|nuORF	ENST00000417455.1_1_10:44101451-44101670:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.309326171875	2	535.307352	1068.60015	3.3665	0.0018021	1.3248	0.00070917	4.6913	0.0025113	535.3080254241021	11.639	0.12026	11.639	11.566	11.686	0					11	4	3	0	0	0	0.35045	1	2293	2293		45.952	3.4775	1	956860			27579	9373	18667	18738	27949	27949					0.06859546639338987
MVHVVYHA	8	Unmodified	_MVHVVYHA_					0	0	0			REV__ENST00000482563.1_1_20:34293047-34295154:-|nuORF	REV__ENST00000482563.1_1_20:34293047-34295154:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2454833984375	2	478.244555	954.474557	0.85755	0.00041012	0.92582	0.00044277	1.7834	0.00085289	478.24507951618807	29.4	0.3579	29.4	29.291	29.648	0					12	7	2	0	0	0	0.70073	1	10775	10775		33.493	1.5381	1	955690	+		27580	19614	18668	18739	27950	27950					-0.004501204262282954
MVIACLALAG	10	Carbamidomethyl (C)	_MVIAC(Carbamidomethyl (C))LALAG_	MVIAC(1)LALAG		MVIAC(78)LALAG		0	1	0		ENST00000446877.5_2_2:190649287-190649320:+|nuORF	ENST00000446877.5_2_2:190649287-190649320:+|nuORF	ENST00000446877.5_2_2:190649287-190649320:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.77520751953125	2	509.774831	1017.53511	-0.47813	-0.00024374	0.38938	0.00019849	-0.088751	-4.5243E-05	509.77515542154754	26.318	0.20597	26.318	26.21	26.416	0					13	6	3	0	0	0	0.21242	1	8251	8251		77.944	10.45	1	266910			27581	9624	18669	18740	27951	27951	397				0.027042288418329008
MVICDIRV	8	Unmodified	_MVICDIRV_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7535095214844	2	474.753898	947.493244	0.65913	0.00031293	-1.2313	-0.00058458	-0.5722	-0.00027165	474.7532321862479	37.573	0.19105	37.573	37.504	37.695	0					7	5	2	0	0	0	0.63077	1	14266	14266		44.117	6.9577	1	43067			27582	1026	18670	18741	27952	27952					0.017396731533153797
MVIPRMVIS	9	Unmodified	_MVIPRMVIS_					0	0	0		ENST00000468700.1_1_3:23996165-23996213:+|nuORF	ENST00000468700.1_1_3:23996165-23996213:+|nuORF	ENST00000468700.1_1_3:23996165-23996213:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2982177734375	2	523.298473	1044.58239	0.08827	4.6192E-05	-0.85222	-0.00044596	-0.76394	-0.00039977	523.2980343268023	41.035	0.13722	41.035	40.96	41.097	0					11	6	2	0	0	0	0.2873	1	15600	15600		51.335	10.557	1	147770			27583	9816	18671	18742	27953	27953					0.06188508112836644
MVIPRMVIS	9	Unmodified	_MVIPRMVIS_					0	0	0		ENST00000468700.1_1_3:23996165-23996213:+|nuORF	ENST00000468700.1_1_3:23996165-23996213:+|nuORF	ENST00000468700.1_1_3:23996165-23996213:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2981567382812	2	523.298473	1044.58239	1.7929	0.00093821	-1.9806	-0.0010364	-0.18772	-9.8232E-05	523.2974873720508	40.964	0.14076	40.964	40.922	41.063	0					10	5	2	0	0	0	0.41113	1	16108	16108		40.778	2.9666	1	89237			27584	9816	18671	18742	27954	27954					0.06188508112836644
MVISRAEKE	9	Unmodified	_MVISRAEKE_					0	0	0			REV__nc|ENSG00000198586|Q9UKI8-4|TLK1	REV__nc|ENSG00000198586|Q9UKI8-4|TLK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7823486328125	2	531.784241	1061.55393	0.12146	6.4591E-05	-3.0721	-0.0016337	-2.9506	-0.0015691	531.7828386082499	41.368	0.12613	41.368	41.284	41.41	0					10	6	2	0	0	0	0.19605	1	15712	15712		62.107	3.3255	1	81813	+		27585	17408	18672	18743	27955	27955					0.025614817372343168
MVIVLARG	8	Unmodified	_MVIVLARG_					0	0	0			REV__nc|ENSG00000070087|P35080-2|PFN2	REV__nc|ENSG00000070087|P35080-2|PFN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.765380859375	2	429.765123	857.515694	0.95879	0.00041205	-0.87674	-0.00037679	0.082047	3.5261E-05	429.76486111853797	28.67	0.21336	28.67	28.565	28.778	0					9	4	3	0	0	0	0.57802	1	10546	10546		52.299	0	1	401220	+		27586	20936	18673	18744	27956	27956					0.08123640613246152
MVIYFMGAI	9	Oxidation (M)	_M(Oxidation (M))VIYFMGAI_		M(1)VIYFMGAI		M(58)VIYFM(-58)GAI	0	0	1		ENSG00000237521|ENST00000456448|OR7E24	ENSG00000237521|ENST00000456448|OR7E24	ENSG00000237521|ENST00000456448|OR7E24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7675170898438	2	530.763932	1059.51331	3.4308	0.0018209	3.1233	0.0016577	6.5541	0.0034787	530.765847602469	41.011	0.66261	41.011	40.606	41.269	0					37	13	4	0	0	0	0.12946	1	16251	16251		72.62	37.002	2	3006900			27587	7916	18674	18745	27957	27957		322			-0.014065759067307226
MVIYGCMI	8	Carbamidomethyl (C)	_MVIYGC(Carbamidomethyl (C))MI_	MVIYGC(1)MI		MVIYGC(55)MI		0	1	0		ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENST00000472593.1_1_3:183521690-183528368:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.73199462890625	2	493.729035	985.443516	2.7753	0.0013703	4.0026	0.0019762	6.778	0.0033465	493.73101662654506	43.404	0.16826	43.404	43.3	43.468	0					9	6	2	0	0	0	0.55232	1	17377	17377		54.895	6.979	1	50558			27588	9867	18675	18746	27958	27958	404				-0.049787778469749355
MVKAPFGSH	9	Unmodified	_MVKAPFGSH_					0	0	0			REV__TRAPPC5|p.T161M|1|0.26|ENSG00000181029|chr19:7682735-7682735|C/T|missense_variant	REV__TRAPPC5|p.T161M|1|0.26|ENSG00000181029|chr19:7682735-7682735|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2508544921875	2	487.249837	972.485122	2.5543	0.0012446	-0.5839	-0.00028451	1.9704	0.00096008	487.2497778775744	22.544	0.76795	22.544	22.254	23.022	0					46	15	4	0	0	0	0.18605	1	7461	7461		63.306	63.306	1	3513500	+		27589	22230	18676	18747	27959	27959					-0.0022213777178876626
MVKHRGDK	8	Unmodified	_MVKHRGDK_					0	0	0		ENST00000470882.5_1_1:161141608-161143639:-|nuORF;ENSG00000158850|ENST00000319769|B4GALT3	ENST00000470882.5_1_1:161141608-161143639:-|nuORF	ENST00000470882.5_1_1:161141608-161143639:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.76654052734375	2	485.766186	969.517819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.959	1	16.959	16.459	17.459	0								0	0	0	1.7419	1	4130	4130		38.806	5.2906	1				27590	5286	18677	18748	27960	27960					0.03184069351073049
MVKKGFPH	8	Unmodified	_MVKKGFPH_					0	0	0		ENST00000563315.2_2_16:50775163-50775262:-|nuORF	ENST00000563315.2_2_16:50775163-50775262:-|nuORF	ENST00000563315.2_2_16:50775163-50775262:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2637634277344	2	472.262748	942.510943	2.4466	0.0011554	-0.52332	-0.00024714	1.9233	0.0009083	472.2625266517665	42.732	0.34572	42.732	42.608	42.954	0					26	10	3	0	0	0	0.6282	1	17045	17045		44.531	44.531	1	769770			27591	10732	18678	18749	27961	27961					0.037387564704886245
MVLAAVLVDS	10	Unmodified	_MVLAAVLVDS_					0	0	0			REV__ENSG00000157219|ENST00000287907|HTR5A	REV__ENSG00000157219|ENST00000287907|HTR5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2854309082031	2	509.286085	1016.55762	1.1658	0.00059375	-1.2109	-0.00061669	-0.045052	-2.2944E-05	509.28567371681584	35.751	0.42374	35.751	35.605	36.028	0					18	12	2	0	0	0	0.57532	1	13892	13892		37.159	0	1	155580	+		27592	15653	18679	18750	27962	27962					0.05000151511103468
MVLCKPKLL	9	Unmodified	_MVLCKPKLL_					0	0	0		ENST00000605265.1_1_10:112660120-112660297:-|nuORF;nc|ENSG00000214413|A8MTZ0-3|BBIP1;nc|ENSG00000214413|A8MTZ0-2|BBIP1;ENSG00000214413|ENST00000448814|BBIP1	ENST00000605265.1_1_10:112660120-112660297:-|nuORF	ENST00000605265.1_1_10:112660120-112660297:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8184204101562	2	522.819041	1043.62353	-1.295	-0.00067703	1.0776	0.00056339	-0.21735	-0.00011363	522.8195892881379	28.923	0.28836	28.923	28.823	29.112	0					18	7	4	0	0	0	0.42902	1	9652	9652		24.203	24.203	1	673450			27593	7812	18680	18751	27963	27963					0.1034626915231911
MVLECLKSPK	10	Unmodified	_MVLECLKSPK_					0	0	0		ENST00000246957.9_1_16:3726078-3727601:-|nuORF	ENST00000246957.9_1_16:3726078-3727601:-|nuORF	ENST00000246957.9_1_16:3726078-3727601:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.314208984375	2	574.31432	1146.61409	-0.11193	-6.4284E-05	0.37643	0.00021619	0.2645	0.00015191	574.3143124895496	34.731	0.20725	34.731	34.641	34.848	0					12	5	3	0	0	0	0.38194	1	12971	12971		58.23	30.148	1	235920			27594	8233	18681	18752	27964	27964					0.04664456076125134
MVLEEPLTK	9	Unmodified	_MVLEEPLTK_					0	0	0		ENST00000423943.1_1_1:159931170-159946492:+|nuORF	ENST00000423943.1_1_1:159931170-159946492:+|nuORF	ENST00000423943.1_1_1:159931170-159946492:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7943725585938	2	530.291368	1058.56818	5.1736	0.0027435	-2.9575	-0.0015683	2.2161	0.0011752	530.7911601443993	35.471	0.13183	35.471	35.4	35.531	0					10	6	2	0	0	0	0.40353	1	12000	12000		41.427	2.6205	1	62824			27595	9416	18682	18753	27965	27965					0.04124134165522264
MVLGTGLRC	9	Unmodified	_MVLGTGLRC_					0	0	0		nc|ENSG00000138463|Q96SL1-2|SLC49A4;ENSG00000138463|ENST00000261038|SLC49A4	nc|ENSG00000138463|Q96SL1-2|SLC49A4	nc|ENSG00000138463|Q96SL1-2|SLC49A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2491149902344	2	475.251523	948.488493	-2.6661	-0.0012671	-2.0811	-0.00098904	-4.7472	-0.0022561	475.2506777529072	32.854	0.43379	32.854	32.529	32.963	0					19	12	2	0	0	0	0.26904	1	11417	11417		53.351	3.9099	1	81477			27596	4264	18683	18754	27966	27966					0.012187890105678889
MVLGWQVRA	9	Unmodified	_MVLGWQVRA_					0	0	0			REV__ENSG00000249242|ENST00000449862|TMEM150C	REV__ENSG00000249242|ENST00000449862|TMEM150C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2915649414062	2	530.292037	1058.56952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.469	1	35.469	34.969	35.969	0								0	0	0	0.15865	1	12638	12638		57.811	13.434	1		+		27597	17721	18684	18755	27967	27967					0.04257813044955583
MVLIPGYMA	9	Unmodified	_MVLIPGYMA_					0	0	0		ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7569274902344	2	497.758649	993.502746	-0.16241	-8.0839E-05	-3.5043	-0.0017443	-3.6667	-0.0018251	497.75699405337303	17.664	0.15963	17.664	17.609	17.768	0					5	3	2	0	0	0	0.16524	1	4460	4460		39.021	0	1	368550			27598	5198	18685	18756	27968	27968					0.005734414388484765
MVLKMVALG	9	Unmodified	_MVLKMVALG_					0	0	0		nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2823181152344	2	481.282292	960.55003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.262	1	41.262	40.762	41.762	0								0	0	0	0.31623	1	15687	15687		31.955	0	1				27599	2008	18686	18757	27969	27969					0.06817720709852892
MVLPKQAPM	9	Oxidation (M)	_MVLPKQAPM(Oxidation (M))_		MVLPKQAPM(1)		M(-68)VLPKQAPM(68)	0	0	1		ENST00000393784.7_1_5:172378203-172378416:+|nuORF	ENST00000393784.7_1_5:172378203-172378416:+|nuORF	ENST00000393784.7_1_5:172378203-172378416:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7742919921875	2	515.774831	1029.53511	1.2175	0.00062794	-1.1556	-0.00059605	0.061816	3.1883E-05	515.7741350469788	28.679	0.33747	28.679	28.603	28.94	0					15	8	3	0	0	0	0.14734	1	10156	10156		68.485	15.133	2	348260			27600	9163	18687	18758	27970	27970		370			0.02152228841850956
MVLPKQAPM	9	Oxidation (M)	_MVLPKQAPM(Oxidation (M))_		MVLPKQAPM(1)		M(-44)VLPKQAPM(44)	0	0	1		ENST00000393784.7_1_5:172378203-172378416:+|nuORF	ENST00000393784.7_1_5:172378203-172378416:+|nuORF	ENST00000393784.7_1_5:172378203-172378416:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.774658203125	2	515.774831	1029.53511	0.74186	0.00038263	-1.7584	-0.00090695	-1.0166	-0.00052432	515.7738805853954	28.468	0.17142	28.468	28.363	28.534	0					7	4	2	0	0	0	0.23186	1	9453	9453		57.811	11.045	2	84210			27601	9163	18687	18758	27971	27971		370			0.02152228841850956
MVLPKQAPM	9	Oxidation (M)	_MVLPKQAPM(Oxidation (M))_		MVLPKQAPM(1)		M(-68)VLPKQAPM(68)	0	0	1		ENST00000393784.7_1_5:172378203-172378416:+|nuORF	ENST00000393784.7_1_5:172378203-172378416:+|nuORF	ENST00000393784.7_1_5:172378203-172378416:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7743530273438	2	515.774831	1029.53511	1.5106	0.00077912	-2.5205	-0.0013	-1.0099	-0.0005209	515.7734686599618	28.599	0.4166	28.599	28.443	28.86	0					12	8	2	0	0	0	0.14734	1	10394	10394		68.485	20.827	2	499520			27602	9163	18687	18758	27972	27972		370			0.02152228841850956
MVLPMPRL	8	Unmodified	_MVLPMPRL_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.774169921875	2	478.774634	955.534715	-0.45286	-0.00021682	-1.2969	-0.00062094	-1.7498	-0.00083775	478.77417508767587	25.547	1.0852	25.547	25.324	26.41	0					24	20	2	0	0	0	0.72892	1	9135	9135		29.842	0.69198	1	90316			27603	4705	18688	18759	27973	27973					0.05516853912649822
MVLQCLRP	8	Unmodified	_MVLQCLRP_					0	0	0		NALCN|p.R989Q|1|0.43|ENSG00000102452|chr13:101103263-101103263|C/T|missense_variant	NALCN|p.R989Q|1|0.43|ENSG00000102452|chr13:101103263-101103263|C/T|missense_variant	NALCN|p.R989Q|1|0.43|ENSG00000102452|chr13:101103263-101103263|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2618408203125	2	480.26189	958.509228	-2.9252	-0.0014049	1.8585	0.00089256	-1.0667	-0.00051229	480.2628534366609	34.924	0.21344	34.924	34.811	35.025	0					14	7	2	0	0	0	0.59411	1	12382	12382		50.025	4.0726	1	111590			27604	11404	18689	18760	27974	27974					0.02831379390215716
MVLQKGQKW	9	Unmodified	_MVLQKGQKW_					0	0	0		nc|ENSG00000187288|Q96AQ7-2|CIDEC;ENSG00000187288|ENST00000336832|CIDEC;nc|ENSG00000187288|Q96AQ7-4|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.314453125	2	559.312969	1116.61138	0.51552	0.00028834	1.5368	0.00085958	2.0524	0.0011479	559.3138150969813	33.491	0.32958	33.491	33.368	33.698	0					18	8	3	0	0	0	0.35021	1	12397	12397		38.806	9.6566	1	519730			27605	7192	18690	18761	27975	27975					0.057743687335005234
MVLTQLGAF	9	Unmodified	_MVLTQLGAF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2687072753906	2	490.267696	978.520839	2.659	0.0013036	-0.38838	-0.00019041	2.2706	0.0011132	490.2675051143697	26.026	0.36651	26.026	25.915	26.282	0					20	7	4	0	0	0	0.032656	1	9130	9130		106.42	10.225	1	6206900			27606	4579	18691	18762	27976	27976					0.030718996852101554
MVMAHLVN	8	Unmodified	_MVMAHLVN_					0	0	0		RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant	RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7322692871094	2	457.732966	913.451379	-2.643	-0.0012098	0.85594	0.00039179	-1.7871	-0.00081801	457.73328436135864	31.538	0.41414	31.538	31.332	31.746	0					17	10	2	0	0	0	0.527	1	10884	10884		57.453	2.688	1	76555			27607	7255	18692	18763	27977	27977					-0.008808825352048189
MVMIMASVGFV	11	2 Oxidation (M)	_M(Oxidation (M))VM(Oxidation (M))IMASVGFV_		M(1)VM(0.984)IM(0.016)ASVGFV		M(42)VM(18)IM(-18)ASVGFV	0	0	2		ENST00000603963.1_1_12:120902595-120903561:-|nuORF	ENST00000603963.1_1_12:120902595-120903561:-|nuORF	ENST00000603963.1_1_12:120902595-120903561:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.7925415039062	2	608.792363	1215.57017	0.83048	0.00050559	-0.87881	-0.00053501	-0.048332	-2.9424E-05	608.7919347534844	24.302	0.90964	24.302	24.196	25.106	0					50	18	5	0	0	0	0.22494	1	8479	8479		71.296	71.296	3	9372900			27608	11058	18693	18764	27978	27978		430;431			-0.028988964124891936
MVNFTSQAN	9	Unmodified	_MVNFTSQAN_					0	0	0		nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2315673828125	2	506.231842	1010.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.432	1	25.432	24.932	25.932	0								0	0	0	0.19749	1	9025	9025		51.335	3.4199	1				27609	5848	18694	18765	27979	27979					-0.05567639739308561
MVPGLALCLL	10	Unmodified	_MVPGLALCLL_					0	0	0		ENSG00000178602|ENST00000319460|OTOS	ENSG00000178602|ENST00000319460|OTOS	ENSG00000178602|ENST00000319460|OTOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.294677734375	2	515.295399	1028.57624	1.199	0.00061784	-1.524	-0.00078529	-0.32496	-0.00016745	515.294477214629	36.296	0.18117	36.296	36.211	36.392	0					12	5	3	0	0	0	0.41345	1	13685	13685		54.765	4.7401	1	134500			27610	6721	18695	18766	27980	27980					0.06309989881310685
MVPKDLGK	8	Unmodified	_MVPKDLGK_					0	0	0		nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2544250488281	2	444.254588	886.494624	0.21904	9.7309E-05	-1.1224	-0.00049864	-0.90337	-0.00040133	444.25427076827987	30.271	0.19666	30.271	30.166	30.362	0					11	6	2	0	0	0	0.59411	1	9621	9621		50.025	7.5501	1	57578			27611	7103	18696	18767	27981	27981					0.0468363051373899
MVPQWICPP	9	Unmodified	_MVPQWICPP_					0	0	0			REV__ENST00000396751.6_1_11:6629379-6629657:+|nuORF	REV__ENST00000396751.6_1_11:6629379-6629657:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7628784179688	2	535.761723	1069.50889	2.1849	0.0011706	0.91218	0.00048871	3.0971	0.0016593	535.7622569522423	30.45	0.93397	30.45	30.206	31.14	0					43	22	3	0	0	0	0.55282	1	11177	11177		26.796	26.796	1	1049300	+		27612	18901	18697	18768	27982	27982					-0.023080403296262375
MVQIQFHQ	8	Unmodified	_MVQIQFHQ_					0	0	0		sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1;sp|F5HE44|US12_HCMVMUncharacterizedproteinUS12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7615966796875	2	515.760569	1029.50659	1.3139	0.00067763	2.5511	0.0013158	3.865	0.0019934	515.7616921623055	38.169	0.19106	38.169	38.082	38.273	0					18	11	2	0	0	0	0.39542	1	12451	12451		71.378	8.0716	1	71476			27613	22447	18698	18769	27983	27983					-0.006987527430965201
MVQIQFHQ	8	Unmodified	_MVQIQFHQ_					0	0	0		sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1;sp|F5HE44|US12_HCMVMUncharacterizedproteinUS12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7621459960938	2	515.760569	1029.50659	3.2606	0.0016817	0.059038	3.045E-05	3.3197	0.0017122	515.7606775045017	38.429	0.34356	38.429	38.283	38.627	0					17	7	3	0	0	0	0.39542	1	15097	15097		71.378	71.378	1	1089600			27614	22447	18698	18769	27984	27984					-0.006987527430965201
MVSAEISENRK	11	Unmodified	_MVSAEISENRK_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-3|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	632.32177734375	2	632.321719	1262.62889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.289	1	21.289	20.789	21.789	0								0	0	0	0.32833	1	5842	5842		31.634	3.5528	1				27615	4578	18699	18770	27985	27985					0.008076194778141144
MVSAEISENRK	11	Unmodified	_MVSAEISENRK_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-3|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	632.32177734375	2	632.321719	1262.62889	-0.18498	-0.00011697	0.33336	0.00021079	0.14838	9.3822E-05	632.3219698864118	21.5	0.16832	21.5	21.39	21.558	0					6	3	2	0	0	0	0.084685	1	7151	7151		76.17	41.018	1	686430			27616	4578	18699	18770	27986	27986					0.008076194778141144
MVSLVSGASGY	11	Unmodified	_MVSLVSGASGY_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.762451171875	2	535.762975	1069.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.002	1	36.002	35.502	36.502	0								0	0	0	0.41918	1	12860	12860		32.812	0.85756	1				27617	2781	18700	18771	27987	27987					-0.020579133909677694
MVSRMIDR	8	Unmodified	_MVSRMIDR_					0	0	0			REV__DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant	REV__DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.509033203125	3	336.509012	1006.50521	0.53463	0.00017991	-0.63465	-0.00021357	-0.10002	-3.3658E-05	336.5088321845579	25.527	0.31208	25.527	25.426	25.738	0					10	6	2	0	0	0	0.68432	1	9081	9081		35.618	2.8059	1	1441700	+		27618	12728	18701	18772	27988	27988					0.002212898965126442
MVSRMVSTM	9	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))VSRMVSTM(Oxidation (M))_		M(0.969)VSRM(0.031)VSTM(1)		M(15)VSRM(-15)VSTM(54)	1	0	2		SCG5|p.E75Vfs*25|1|0.15|ENSG00000166922|chr15:32643815-32643816|-/TC|frameshift_variant;nc|ENSG00000166922|P05408-2|SCG5;ENSG00000166922|ENST00000300175|SCG5	SCG5|p.E75Vfs*25|1|0.15|ENSG00000166922|chr15:32643815-32643816|-/TC|frameshift_variant	SCG5|p.E75Vfs*25|1|0.15|ENSG00000166922|chr15:32643815-32643816|-/TC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2491455078125	2	558.24832	1114.48209	1.7409	0.00097188	0.018144	1.0129E-05	1.7591	0.000982	558.2482835394324	33.649	3.7388	33.649	33.388	37.127	0					172	103	2	0	0	0	0.20551	1	12834	12834		60.972	13.315	3	21504000			27619	5948	18702	18773	27989	27989		240;241			-0.07057517003136127
MVSRSIFC	8	Unmodified	_MVSRSIFC_					0	0	0		ENST00000508189.1_1_4:162307532-162307586:+|nuORF	ENST00000508189.1_1_4:162307532-162307586:+|nuORF	ENST00000508189.1_1_4:162307532-162307586:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7298278808594	2	471.730423	941.446293	-0.39303	-0.00018541	-1.5645	-0.00073801	-1.9575	-0.00092341	471.72981361962997	21.442	0.14312	21.442	21.341	21.484	0					12	5	3	0	0	0	0.64096	1	5888	5888		42.474	5.3154	1	123190			27620	10208	18703	18774	27990	27990					-0.026771863978297006
MVTEIRLK	8	Unmodified	_MVTEIRLK_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2940979003906	2	495.294245	988.573937	0.74201	0.00036751	-1.2276	-0.00060802	-0.48558	-0.00024051	495.29384175817717	26.005	0.18047	26.005	25.916	26.096	0					9	4	3	0	0	0	0.46013	1	8932	8932		64.207	5.4253	1	303280			27621	7301	18704	18775	27991	27991					0.0791927746786314
MVTGIRAWP	9	Unmodified	_MVTGIRAWP_					0	0	0			REV__ENST00000442832.8_1_19:58341801-58341915:+|nuORF	REV__ENST00000442832.8_1_19:58341801-58341915:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7799072265625	2	515.778762	1029.54297	1.4374	0.00074139	0.49085	0.00025317	1.9283	0.00099456	515.7792133620547	32.409	0.56242	32.409	32.126	32.688	0					22	13	4	0	0	0	0.22377	1	12324	12324		58.782	9.3404	1	896950	+		27622	19257	18705	18776	27992	27992					0.029381241536157177
MVTGLRPK	8	Unmodified	_MVTGLRPK_					0	0	0			REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2708435058594	2	451.26803	900.521507	0.65718	0.00029657	2.5735	0.0011613	3.2306	0.0014579	451.2704139495012	32.595	0.57363	32.595	32.342	32.915	0					43	14	5	0	0	0	0.44433	1	12027	12027		65.803	7.9919	1	1266100	+		27623	15534	18706	18777	27993	27993					0.06726739124917458
MVTILTACPF	10	Unmodified	_MVTILTACPF_					0	0	0			REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2823486328125	2	548.282489	1094.55042	-1.5075	-0.00082654	2.2087	0.001211	0.70117	0.00038444	548.2836622223749	37.974	0.13207	37.974	37.915	38.047	0					9	6	2	0	0	0	0.54197	1	13588	13588		40.778	0	1	59524	+		27624	16124	18707	18778	27994	27994					0.006930956390078791
MVTLKRPRG	9	Unmodified	_MVTLKRPRG_					0	0	0			REV__CBX2|p.A85V|1|0.35|ENSG00000173894|chr17:79781767-79781767|C/T|missense_variant	REV__CBX2|p.A85V|1|0.35|ENSG00000173894|chr17:79781767-79781767|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.21697998046875	3	353.214816	1056.62262	3.0399	0.0010737	2.9939	0.0010575	6.0338	0.0021312	353.21578978503675	26.273	0.26685	26.273	26.168	26.434	0					8	5	2	0	0	0	0.45358	1	9278	9278		29.17	0	1	531160	+		27625	12343	18708	18779	27995	27995					0.09657190827624618
MVTLWRLAV	9	Unmodified	_MVTLWRLAV_					0	0	0		ZSWIM8|p.R532Pfs*6|1|0.14|ENSG00000214655|chr10:73792129-73792130|-/C|frameshift_variant;ZSWIM8|p.P689Lfs*46|1|0.15|ENSG00000214655|chr10:73792600-73792600|C/-|frameshift_variant;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8	ZSWIM8|p.R532Pfs*6|1|0.14|ENSG00000214655|chr10:73792129-73792130|-/C|frameshift_variant	ZSWIM8|p.R532Pfs*6|1|0.14|ENSG00000214655|chr10:73792129-73792130|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.819091796875	2	544.817887	1087.62122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.958	1	26.958	26.458	27.458	0								0	0	0	0.31838	1	8537	8537		6.7355	0	1				27626	7815	18709	18780	27996	27996					0.08091556738850159
MVVCKESGCSP	11	Unmodified	_MVVCKESGCSP_					0	0	0			REV__nc|ENSG00000154645|Q9H9P2-2|CHODL	REV__nc|ENSG00000154645|Q9H9P2-2|CHODL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.2479858398438	2	570.24832	1138.48209	0.098832	5.6359E-05	-0.017157	-9.7837E-06	0.081675	4.6575E-05	570.248410668957	19.866	0.28539	19.866	19.808	20.093	0					12	9	2	0	0	0	0.7887	1	5450	5450		17.468	0.10304	1	78929	+		27627	15570	18710	18781	27997	27997					-0.08161517003122754
MVVDWVAV	8	Unmodified	_MVVDWVAV_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7421569824219	2	459.741314	917.468075	0.81287	0.00037371	0.416	0.00019125	1.2289	0.00056496	459.7416568442117	35.36	0.20033	35.36	35.305	35.506	0					6	5	2	0	0	0	0.74117	1	13276	13276		28.254	0	1	33666	+		27628	15643	18711	18782	27998	27998					0.006039416223984517
MVVEERCVY	9	Unmodified	_MVVEERCVY_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126964989-126965184:+|nuORF;ENST00000511309.5_1_5:176730986-176733129:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.2650756835938	2	564.264827	1126.5151	1.7781	0.0010033	-2.8404	-0.0016027	-1.0623	-0.00059943	564.2641970612185	34.689	0.21075	34.689	34.573	34.783	0					12	5	3	0	0	0	0.24095	1	12939	12939		56.721	8.8055	1	161630			27629	6155	18712	18783	27999	27999					-0.04309566888764493
MVVGTVWM	8	Unmodified	_MVVGTVWM_					0	0	0			REV__MFGE8|p.T143M|1|0.3|ENSG00000140545|chr15:88906738-88906738|G/A|missense_variant	REV__MFGE8|p.T143M|1|0.3|ENSG00000140545|chr15:88906738-88906738|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.730712890625	2	461.729892	921.445231	4.1951	0.001937	-2.0016	-0.0009242	2.1935	0.0010128	461.72913853649777	24.884	0.20706	24.884	24.811	25.018	0					17	6	3	0	0	0	0.30928	1	7665	7665		81.716	4.8694	1	734260	+		27630	20881	18713	18784	28000	28000					-0.018634007667287733
MVVHPATN	8	Unmodified	_MVVHPATN_					0	0	0			REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.72119140625	2	434.720913	867.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.762	1	35.762	35.262	36.262	0								0	0	0	1.7419	1	13882	13882		28.254	1.4582	1		+		27631	19466	18714	18785	28001	28001					-0.011743996972199966
MVVLHFLQK	9	Unmodified	_MVVLHFLQK_					0	0	0		SLC27A6|p.K104Rfs*8|1|0.38|ENSG00000113396|chr5:128966444-128966444|A/-|frameshift_variant;ENSG00000113396|ENST00000262462|SLC27A6	SLC27A6|p.K104Rfs*8|1|0.38|ENSG00000113396|chr5:128966444-128966444|A/-|frameshift_variant	SLC27A6|p.K104Rfs*8|1|0.38|ENSG00000113396|chr5:128966444-128966444|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7923583984375	2	557.825712	1113.63687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.667	1	11.667	11.167	12.167	0								0	0	0	0.31623	1	2294	2294		31.955	6.5047	1				27632	2802	18715	18786	28002	28002					0.08459843255900523
MVVPPQPPL	9	Unmodified	_MVVPPQPPL_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2789306640625	2	489.278063	976.541574	-0.074885	-3.6639E-05	1.5378	0.0007524	1.4629	0.00071576	489.2786575577451	27.031	0.15769	27.031	26.978	27.135	0					7	3	3	0	0	0	0.45358	1	9758	9758		37.159	0.71236	1	144580			27633	8072	18716	18787	28003	28003					0.05236490064885402
MVVQPFPRG	9	Unmodified	_MVVQPFPRG_					0	0	0			REV__ENST00000398050.3_1_10:127355985-127356390:-|nuORF	REV__ENST00000398050.3_1_10:127355985-127356390:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7792358398438	2	515.778762	1029.54297	0.075815	3.9104E-05	1.0291	0.0005308	1.1049	0.0005699	515.7792754134966	26.079	0.19496	26.079	26.015	26.21	0					8	6	2	0	0	0	0.43426	1	8162	8162		38.806	2.3594	1	54156	+		27634	18921	18717	18788	28004	28004					0.02938124153638455
MVVVRLSPV	9	Unmodified	_MVVVRLSPV_					0	0	0		ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.3045959472656	2	500.304613	998.594672	-0.15952	-7.9809E-05	-0.30662	-0.0001534	-0.46614	-0.00023321	500.3046175832892	40.381	0.23595	40.381	40.301	40.537	0					22	9	3	0	0	0	0.41113	1	15393	15393		40.778	6.6056	1	445100			27635	9583	18718	18789	28005	28005					0.09531867847533704
MVYFLILY	8	Oxidation (M)	_M(Oxidation (M))VYFLILY_		M(1)VYFLILY		M(55)VYFLILY	0	0	1		ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.290771484375	2	539.288097	1076.56164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.042	1	45.042	44.542	45.542	0								0	0	0	1.7419	1	17472	17472		54.895	17.735	1				27636	3504	18719	18790	28006	28006		151			0.026422410048326128
MVYLERSE	8	Unmodified	_MVYLERSE_					0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.75	2	513.749867	1025.48518	-1.6347	-0.00083983	1.5519	0.00079728	-0.082819	-4.2548E-05	513.7507014144828	35.291	0.29633	35.291	35.141	35.438	0					20	10	3	0	0	0	0.66372	1	12532	12532		38.806	1.647	1	145840	+		27637	13882	18720	18791	28007	28007					-0.02654182562423557
MVYREGETL	9	Oxidation (M)	_M(Oxidation (M))VYREGETL_		M(1)VYREGETL		M(74)VYREGETL	0	0	1			REV__ENST00000471158.1_1_3:53137921-53154019:-|nuORF	REV__ENST00000471158.1_1_3:53137921-53154019:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2681274414062	2	557.265881	1112.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.287	1	41.287	40.787	41.787	0								0	0	0	0.09203	1	16413	16413		73.975	19.21	1		+		27638	15937	18721	18792	28008	28008		610			-0.03454814879319201
MWAQGGTWAW	10	Unmodified	_MWAQGGTWAW_					0	0	0		ENST00000360168.7_1_12:6484086-6484212:-|nuORF	ENST00000360168.7_1_12:6484086-6484212:-|nuORF	ENST00000360168.7_1_12:6484086-6484212:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.2623901367188	2	597.263476	1192.5124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.685	1	48.685	48.185	49.185	0								0	0	0	0.4201	1	19330	19330		18.262	0	1				27639	8859	18722	18793	28009	28009					-0.07615654231426561
MWFGFACLL	9	Unmodified	_MWFGFACLL_					0	0	0			REV__SUN5|p.E154Gfs*8|1|0.26|ENSG00000167098|chr20:32995692-32995693|-/C|frameshift_variant	REV__SUN5|p.E154Gfs*8|1|0.26|ENSG00000167098|chr20:32995692-32995693|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2606201171875	2	544.258816	1086.50308	3.6814	0.0020036	-0.87146	-0.0004743	2.8099	0.0015293	544.2584381204333	42.595	1.0054	42.595	42.463	43.468	0					67	31	4	0	0	0	0.43174	1	17151	17151		39.021	7.0666	1	764370	+		27640	16165	18723	18794	28010	28010					-0.03671138841286847
MWKGLQPC	8	Unmodified	_MWKGLQPC_					0	0	0		ENST00000467807.5_1_19:56888677-56888731:+|nuORF	ENST00000467807.5_1_19:56888677-56888731:+|nuORF	ENST00000467807.5_1_19:56888677-56888731:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7323913574219	2	481.732966	961.451379	-0.11568	-5.5726E-05	-0.85813	-0.00041339	-0.9738	-0.00046911	481.7324797488885	31.195	0.21986	31.195	31.033	31.253	0					8	5	2	0	0	0	0.68754	1	11349	11349		35.201	2.3883	1	118930			27641	9805	18724	18795	28011	28011					-0.03088882535189441
MWLALLGAL	9	Unmodified	_MWLALLGAL_					0	0	0		ENSG00000203499|ENST00000527139|IQANK1	ENSG00000203499|ENST00000527139|IQANK1	ENSG00000203499|ENST00000527139|IQANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.289794921875	2	494.288431	986.562309	-0.45323	-0.00022403	2.7891	0.0013786	2.3359	0.0011546	494.28988709189065	46.591	0.10293	46.591	46.506	46.609	0					9	6	2	0	0	0	0.52436	1	17192	17192		29.842	0	1	119730			27642	7650	18725	18796	28012	28012					0.06849080444544597
MWPSGIKHKA	10	Unmodified	_MWPSGIKHKA_					0	0	0		ENST00000245543.5_1_17:73125797-73126031:+|nuORF	ENST00000245543.5_1_17:73125797-73126031:+|nuORF	ENST00000245543.5_1_17:73125797-73126031:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.8112182617188	2	577.810593	1153.60663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.691	1	32.691	32.191	33.191	0								0	0	0	0.40862	1	12446	12446		27.882	0.83493	1				27643	8224	18726	18797	28013	28013					0.035974845907276176
MWRSILLL	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))WRSILLL_		M(1)WRSILLL		M(60)WRSILLL	1	0	1		ENST00000508798.5_1_4:99399848-99399875:-|nuORF	ENST00000508798.5_1_4:99399848-99399875:-|nuORF	ENST00000508798.5_1_4:99399848-99399875:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.8744812011719	3	363.875689	1088.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.184	1	29.184	28.684	29.684	0								0	0	0	1.7419	1	10395	10395		60.294	12.637	1				27644	10214	18727	18798	28014	28014		405			0.06447850501990615
MWSASILAT	9	Unmodified	_MWSASILAT_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2496032714844	2	490.249503	978.484453	-0.069608	-3.4125E-05	-0.65113	-0.00031921	-0.72074	-0.00035334	490.2492237772601	26.755	0.7173	26.755	26.277	26.994	0					26	14	2	0	0	0	0.50461	1	9544	9544		31.955	0	1	135970	+		27645	16647	18728	18799	28015	28015					-0.0056497721150208235
MWSIMEEQ	8	Unmodified	_MWSIMEEQ_					0	0	0			REV__nc|ENSG00000146192|Q7Z6J4-4|FGD2	REV__nc|ENSG00000146192|Q7Z6J4-4|FGD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.221923828125	2	527.222628	1052.4307	0.28437	0.00014993	-1.0078	-0.00053131	-0.72338	-0.00038138	527.2220501392084	11.968	0.92558	11.968	11.785	12.71	0					79	24	7	0	0	0	0.65276	1	2533	2533		40.573	40.573	1	8673500	+		27646	15303	18729	18800	28016	28016					-0.09341517705524893
MWSWFLCWKPV	11	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))MWSWFLC(Carbamidomethyl (C))WKPV_	MWSWFLC(1)WKPV		MWSWFLC(50)WKPV		1	1	0		nc|ENSG00000164796|Q7Z407-2|CSMD3	nc|ENSG00000164796|Q7Z407-2|CSMD3	nc|ENSG00000164796|Q7Z407-2|CSMD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	791.37353515625	2	791.372701	1580.73085	-1.6551	-0.0013098	1.9324	0.0015292	0.27729	0.00021944	791.3748250235287	26.627	0.16704	26.627	26.493	26.661	0					5	3	2	0	0	0	0.42746	1	9555	9555		49.536	18.006	1	137760			27647	11620	18730	18801	28017	28017	458				-0.03628805704124716
MWVGIEEICI	10	Unmodified	_MWVGIEEICI_					0	0	0			REV__STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	REV__STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.2940063476562	2	596.790678	1191.5668	0.11623	6.9367E-05	1.4734	0.0008793	1.5896	0.00094867	596.7912909544814	37.702	0.22686	37.702	37.549	37.776	0					17	7	3	0	0	0	0.56015	1	14731	14731		38.806	3.6054	1	116000	+		27648	14211	18731	18802	28018	28018					-0.02131823194849858
MYGKVYRI	8	Unmodified	_MYGKVYRI_					0	0	0		ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H	ENST00000476003.1_1_3:184084469-184086079:+|nuORF	ENST00000476003.1_1_3:184084469-184086079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2817993164062	2	515.281137	1028.54772	0.77367	0.00039866	-0.27356	-0.00014096	0.50011	0.0002577	515.2812445106866	28.15	0.11067	28.15	28.096	28.207	0					4	2	2	0	0	0	0.44433	1	10295	10295		65.803	11.039	1	57231			27649	5618	18732	18803	28019	28019					0.03459008296385946
MYHCLAEL	8	Unmodified	_MYHCLAEL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.22357177734375	2	490.222431	978.430309	-0.11215	-5.4977E-05	2.2831	0.0011192	2.171	0.0010643	490.22319780248097	32.15	0.13793	32.15	32.076	32.214	0					9	4	3	0	0	0	0.64096	1	11167	11167		42.474	0.078325	1	59185			27650	11445	18733	18804	28020	28020					-0.05976892634714659
MYLIAPNY	8	Unmodified	_MYLIAPNY_					0	0	0		ENST00000430710.7_1_14:21853573-21853762:-|nuORF	ENST00000430710.7_1_14:21853573-21853762:-|nuORF	ENST00000430710.7_1_14:21853573-21853762:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7482604980469	2	492.746596	983.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.027	1	31.027	30.527	31.527	0								0	0	0	1.7419	1	11555	11555		62.978	20.504	1				27651	9492	18734	18805	28021	28021					-0.013760757231807474
MYLKTVDKF	9	Unmodified	_MYLKTVDKF_					0	0	0		TRAPPC2B|p.E69K|1|0.22|ENSG00000256060|chr19:57365038-57365038|G/A|missense_variant;TRAPPC2|p.E69K|1|0.42|ENSG00000196459|chrX:13716567-13716567|C/T|missense_variant;nc|ENSG00000196459|P0DI81-2|TRAPPC2;TRAPPC2B|p.Y115Mfs*25|1|0.08|ENSG00000256060|chr19:57365173-57365173|T/-|frameshift_variant;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	TRAPPC2B|p.E69K|1|0.22|ENSG00000256060|chr19:57365038-57365038|G/A|missense_variant	TRAPPC2B|p.E69K|1|0.22|ENSG00000256060|chr19:57365038-57365038|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.2071533203125	3	382.207216	1143.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.55	1	33.55	33.05	34.05	0								0	0	0	0.3245	1	11787	11787		30.318	7.7381	1				27652	7365	18735	18806	28022	28022					0.033761269194883425
MYRDYSMVT	9	Unmodified	_MYRDYSMVT_					0	0	0			REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.2542114257812	2	583.254459	1164.49437	-0.00098922	-5.7697E-07	-2.0072	-0.0011707	-2.0082	-0.0011713	583.2532599686205	37.067	0.17559	37.067	36.966	37.142	0					6	5	2	0	0	0	0.33044	1	14016	14016		47.657	3.5405	1	62951	+		27653	17399	18736	18807	28023	28023					-0.08130157268442417
MYSFVNDKF	9	Unmodified	_MYSFVNDKF_					0	0	0		ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant;ENSG00000163874|ENST00000373087|ZC3H12A;ZC3H12B|p.S479Afs*71|1|0.28|ENSG00000102053|chrX:65502124-65502124|C/-|frameshift_variant;ZC3H12B|p.V574Cfs*14|1|0.11|ENSG00000102053|chrX:65502413-65502413|G/-|frameshift_variant;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant;ENSG00000149289|ENST00000278590|ZC3H12C	ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.266357421875	2	575.765517	1149.51648	3.3124	0.0019072	-3.3553	-0.0019319	-0.04294	-2.4723E-05	575.7640425967227	44.124	0.32548	44.124	43.862	44.188	0					16	13	2	0	0	0	0.18416	1	17666	17666		63.534	10.182	1	118870			27654	5616;4874	18737	18808	28024	28024					-0.0522960952835092
MYTGTLDC	8	Unmodified	_MYTGTLDC_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000463551.1_1_X:118604271-118605018:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENST00000444439.1_1_7:54487838-54488018:+|nuORF;ENST00000422717.1_1_9:32333457-32333676:-|nuORF	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.1832275390625	2	452.182971	902.35139	-0.32749	-0.00014808	-1.2342	-0.00055806	-1.5616	-0.00070615	452.18242007986413	39.506	0.1573	39.506	39.45	39.608	0					13	9	2	0	0	0	0.78999	1	12839	12839		13.775	0	1	40432			27655	952	18738	18809	28025	28025					-0.10369164659675789
MYVAFMIF	8	Unmodified	_MYVAFMIF_					0	0	0			REV__ENST00000441248.5_1_X:148622401-148622455:+|nuORF	REV__ENST00000441248.5_1_X:148622401-148622455:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2459411621094	2	511.247917	1020.48128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.875	1	29.875	29.375	30.375	0								0	0	0	1.7419	1	10104	10104		43.626	8.0078	1		+		27656	19235	18739	18810	28026	28026					-0.028139435898651755
MYVFASHHF	9	Oxidation (M)	_M(Oxidation (M))YVFASHHF_		M(1)YVFASHHF		M(48)YVFASHHF	0	0	1		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;DUOX2|p.R1211C|1|0.09|ENSG00000140279|chr15:45097676-45097676|G/A|missense_variant;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.7581176757812	2	577.758027	1153.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.052	1	32.052	31.552	32.552	0								0	0	0	0.22106	1	12146	12146		47.916	10.104	1				27657	4374;4202	18740	18811	28027	28027		172			-0.06911056605713384
NAAEIKLTM	9	Unmodified	_NAAEIKLTM_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000580060.1_1_18:47022337-47022472:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7686767578125	2	495.76806	989.521567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.931	1	36.931	36.431	37.431	0								0	0	0	0.29356	1	12102	12102		36.447	1.2947	1				27658	6512	18741	18812	28028	28028					0.026386943342572522
NAAEIKLTM	9	Unmodified	_NAAEIKLTM_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000580060.1_1_18:47022337-47022472:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.76788330078125	2	495.76806	989.521567	0.7342	0.00036399	-0.64946	-0.00032198	0.084744	4.2014E-05	495.7679211741225	37.221	0.19316	37.221	37.142	37.335	0					13	5	3	0	0	0	0.12834	1	14105	14105		72.879	10.772	1	171800			27659	6512	18741	18812	28029	28029					0.026386943342572522
NAAEIKLTM	9	Unmodified	_NAAEIKLTM_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000580060.1_1_18:47022337-47022472:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.76873779296875	2	495.76806	989.521567	-0.03701	-1.8348E-05	0.1944	9.6375E-05	0.15739	7.8027E-05	495.7678088083613	37.205	0.22191	37.205	37.095	37.317	0					12	6	3	0	0	0	0.035106	1	14532	14532		104.01	28.97	1	136400			27660	6512	18741	18812	28030	28030					0.026386943342572522
NAAEIKLTM	9	Unmodified	_NAAEIKLTM_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000580060.1_1_18:47022337-47022472:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7680969238281	2	495.76806	989.521567	-0.66973	-0.00033203	0.65605	0.00032525	-0.013685	-6.7844E-06	495.76842427330246	37.147	0.35941	37.147	37.023	37.383	0					14	7	3	0	0	0	0.10506	1	14498	14498		78.264	10.77	1	178400			27661	6512	18741	18812	28031	28031					0.026386943342572522
NAAKIFNLY	9	Unmodified	_NAAKIFNLY_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000147647|ENST00000351513|DPYS;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3;ENST00000511535.1_1_4:5823489-5889136:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2903442382812	2	527.290017	1052.56548	2.0979	0.0011062	0.099656	5.2547E-05	2.1976	0.0011588	527.2899066283793	44.066	0.25049	44.066	43.962	44.212	0					30	14	3	0	0	0	0.03984	1	16547	16547		99.375	44.61	1	311860			27662	844;1503	18742	18813	28032	28032					0.041300468229110265
NAAKIFNLY	9	Unmodified	_NAAKIFNLY_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000147647|ENST00000351513|DPYS;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3;ENST00000511535.1_1_4:5823489-5889136:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7909545898438	2	527.290017	1052.56548	1.7568	0.00092634	-0.34227	-0.00018047	1.4145	0.00074587	527.2896012538014	44.007	0.22367	44.007	43.928	44.152	0					29	12	3	0	0	0	0.47038	1	17164	17164		35.618	5.1146	1	233310			27663	844;1503	18742	18813	28033	28033					0.041300468229110265
NAAKIFNLY	9	Unmodified	_NAAKIFNLY_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000147647|ENST00000351513|DPYS;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3;ENST00000511535.1_1_4:5823489-5889136:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2919311523438	2	527.290017	1052.56548	1.2334	0.00065035	0.76283	0.00040223	1.9962	0.0010526	527.2906551002703	43.833	0.15997	43.833	43.734	43.894	0					13	9	2	0	0	0	0.2873	1	15134	15134		51.335	18.523	1	35653			27664	844;1503	18742	18813	28034	28034					0.041300468229110265
NAAKIFNLY	9	Unmodified	_NAAKIFNLY_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000147647|ENST00000351513|DPYS;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3;ENST00000511535.1_1_4:5823489-5889136:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2918090820312	2	527.290017	1052.56548	0.65813	0.00034703	1.1354	0.00059869	1.7935	0.00094572	527.2906412531569	43.97	0.35824	43.97	43.848	44.206	0					36	14	4	0	0	0	0.015338	1	17598	17598		129.68	38.906	1	573830			27665	844;1503	18742	18813	28035	28035					0.041300468229110265
NAAKIFNLY	9	Unmodified	_NAAKIFNLY_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000147647|ENST00000351513|DPYS;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3;ENST00000511535.1_1_4:5823489-5889136:-|nuORF	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2905883789062	2	527.290017	1052.56548	1.6285	0.00085869	-0.93439	-0.00049269	0.6941	0.00036599	527.2894561898053	43.98	0.43637	43.98	43.837	44.273	0					40	17	3	0	0	0	0.030949	1	17594	17594		108.09	55.788	1	763310			27666	844;1503	18742	18813	28036	28036					0.041300468229110265
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.282470703125	2	520.282192	1038.54983	1.4644	0.00076191	-0.16721	-8.6995E-05	1.2972	0.00067491	520.2821733346287	40.138	0.28383	40.138	40.016	40.3	0					35	16	3	0	0	0	0.095583	1	12976	12976		84.916	16.129	1	150780			27667	1881	18743	18814	28037	28037					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2824096679688	2	520.282192	1038.54983	1.4366	0.00074745	-0.57141	-0.00029729	0.86521	0.00045016	520.2818678106855	40.452	0.51914	40.452	40.288	40.807	0					55	22	4	0	0	0	0.020674	1	15399	15399		129.68	35.676	1	1555500			27668	1881	18743	18814	28038	28038					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2835083007812	2	520.282192	1038.54983	4.9713	0.0025865	-2.0297	-0.001056	2.9417	0.0015305	520.2811463987591	40.214	0.20753	40.214	40.148	40.356	0					15	11	2	0	0	0	0.04067	1	13478	13478		104.75	25.296	1	73249			27669	1881	18743	18814	28039	28039					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2823486328125	2	520.282192	1038.54983	1.104	0.00057438	-0.15511	-8.07E-05	0.94888	0.00049369	520.2821091952401	40.426	0.33864	40.426	40.322	40.661	0					34	13	4	0	0	0	0.013878	1	15902	15902		129.68	14.224	1	530770			27670	1881	18743	18814	28040	28040					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2835693359375	2	520.282192	1038.54983	1.6855	0.00087696	1.1205	0.00058295	2.806	0.0014599	520.2827001460519	40.433	0.20647	40.433	40.391	40.597	0					15	8	3	0	0	0	0.085655	1	15941	15941		87.754	8.3033	1	257950			27671	1881	18743	18814	28041	28041					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.283447265625	2	520.282192	1038.54983	1.39	0.0007232	0.73852	0.00038424	2.1285	0.0011074	520.282746254392	40.199	0.20544	40.199	40.123	40.328	0					25	10	3	0	0	0	0.078509	1	14277	14277		90.777	8.4716	1	181230			27672	1881	18743	18814	28042	28042					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2828979492188	2	520.282192	1038.54983	1.01	0.00052547	0.10648	5.5397E-05	1.1164	0.00058086	520.282292944707	40.195	0.33378	40.195	40.057	40.391	0					34	17	3	0	0	0	0.10506	1	14274	14274		82.241	32.799	1	310140			27673	1881	18743	18814	28043	28043					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2822875976562	2	520.282192	1038.54983	0.33911	0.00017643	0.58692	0.00030536	0.92603	0.0004818	520.2823697817897	40.367	0.50593	40.367	40.229	40.735	0					36	11	5	0	0	0	0.04067	2	15988	15988;16160		104.75	13.97	1	2677400			27674	1881	18743	18814	28044;28045	28044					0.032097603058673485
NAAKVFNLY	9	Unmodified	_NAAKVFNLY_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2823486328125	2	520.282192	1038.54983	1.6233	0.00084458	-0.85635	-0.00044555	0.76695	0.00039903	520.281663152801	40.399	0.4557	40.399	40.134	40.59	0					25	10	3	0	0	0	0.020674	1	15999	15999		129.68	35.676	1	2257300			27675	1881	18743	18814	28046	28046					0.032097603058673485
NAALLPEEAP	10	Unmodified	_NAALLPEEAP_					0	0	0			REV__nc|ENSG00000157168|Q02297-9|NRG1	REV__nc|ENSG00000157168|Q02297-9|NRG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7669067382812	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.122	1	32.122	31.622	32.622	0								0	0	0	0.40446	1	11138	11138		29.15	3.5755	1		+		27676	21078	18744	18815	28047	28047					0.012854463437065533
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.7245178222656	2	462.724707	923.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.118	1	28.118	27.618	28.618	0								0	0	0	0.091069	1	8746	8746		74.255	26.339	1				27677	2816	18745	18816	28048	28048					-0.029919688959580526
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.7243347167969	2	462.724707	923.43486	0.11126	5.1481E-05	1.7722	0.00082003	1.8834	0.00087151	462.7243424633052	28.14	0.29851	28.14	28.017	28.316	0					26	10	3	0	0	0	0.010494	1	8729	8729		139.97	65.996	1	272050			27678	2816	18745	18816	28049	28049					-0.029919688959580526
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7239990234375	2	462.724707	923.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.368	1	28.368	27.868	28.868	0								0	0	0	0.040385	1	10017	10017		90.601	19.305	1				27679	2816	18745	18816	28050	28050					-0.029919688959580526
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.72442626953125	2	462.724707	923.43486	0.66735	0.0003088	2.2093	0.0010223	2.8766	0.0013311	462.72412634189084	28.437	0.45006	28.437	28.291	28.741	0					31	11	4	0	0	0	0.037924	1	10027	10027		101.25	23.309	1	1318300			27680	2816	18745	18816	28051	28051					-0.029919688959580526
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.7249755859375	2	462.724707	923.43486	4.1584	0.0019242	-0.85406	-0.0003952	3.3043	0.001529	462.7228842731527	28.183	0.37338	28.183	28.022	28.396	0					35	13	4	0	0	0	0.012915	1	9026	9026		134.81	71.504	1	210050			27681	2816	18745	18816	28052	28052					-0.029919688959580526
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.72412109375	2	462.724707	923.43486	-0.14525	-6.7211E-05	2.6147	0.0012099	2.4695	0.0011427	462.724505482496	28.442	0.74536	28.442	28.291	29.037	0					37	15	4	0	0	0	0.022525	1	10386	10386		117.81	54.833	1	2021300			27682	2816	18745	18816	28053	28053					-0.029919688959580526
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7244567871094	2	462.724707	923.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.187	1	28.187	27.687	28.687	0								0	0	0	0.015064	1	9322	9322		104.06	49.292	1				27683	2816	18745	18816	28054	28054					-0.029919688959580526
NAAQTSVAY	9	Unmodified	_NAAQTSVAY_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7244567871094	2	462.724707	923.43486	-0.47244	-0.00021861	2.0915	0.00096777	1.619	0.00074916	462.7246659102745	28.333	0.71361	28.333	28.211	28.925	0					40	14	5	0	0	0	0.026538	1	10254	10254		112.41	49.432	1	4138100			27684	2816	18745	18816	28055	28055					-0.029919688959580526
NAARDFVNY	9	Unmodified	_NAARDFVNY_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.Q155Lfs*8|1|0.08|ENSG00000135829|chr1:182853404-182853405|-/TG|frameshift_variant;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2573852539062	2	535.256705	1068.49886	-0.59489	-0.00031842	2.0719	0.001109	1.477	0.00079056	535.2579108313201	33.072	0.38328	33.072	32.936	33.319	0					27	16	3	0	0	0	0.37744	1	11069	11069		44.377	10.205	1	242570			27685	4025	18746	18817	28056	28056					-0.032651887390102274
NAARDFVNY	9	Unmodified	_NAARDFVNY_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.Q155Lfs*8|1|0.08|ENSG00000135829|chr1:182853404-182853405|-/TG|frameshift_variant;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2574462890625	2	535.256705	1068.49886	1.8075	0.00096748	-0.81327	-0.00043531	0.99423	0.00053217	535.2560839359645	33.269	0.31684	33.269	33.176	33.493	0					23	7	4	0	0	0	0.046074	1	12711	12711		90.601	35.097	1	1516700			27686	4025	18746	18817	28057	28057					-0.032651887390102274
NAARDFVNY	9	Unmodified	_NAARDFVNY_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.Q155Lfs*8|1|0.08|ENSG00000135829|chr1:182853404-182853405|-/TG|frameshift_variant;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2564086914062	2	535.256705	1068.49886	1.0812	0.00057871	0.94751	0.00050716	2.0287	0.0010859	535.2569148989627	33.058	0.26575	33.058	32.963	33.229	0					17	8	3	0	0	0	0.21222	1	11550	11550		61.691	33.437	1	183990			27687	4025	18746	18817	28058	28058					-0.032651887390102274
NAARDFVNY	9	Unmodified	_NAARDFVNY_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.Q155Lfs*8|1|0.08|ENSG00000135829|chr1:182853404-182853405|-/TG|frameshift_variant;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2568969726562	2	535.256705	1068.49886	1.8825	0.0010076	-1.3077	-0.00069998	0.57471	0.00030762	535.2557691954149	33.24	0.31404	33.24	33.135	33.449	0					22	6	4	0	0	0	0.022698	1	12603	12603		101.25	62.446	1	1624600			27688	4025	18746	18817	28059	28059					-0.032651887390102274
NAARRRVI	8	Unmodified	_NAARRRVI_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.3002014160156	2	478.299042	954.583531	2.2472	0.0010748	0.11605	5.5506E-05	2.3632	0.0011303	478.2991588446232	42.552	0.18824	42.552	42.433	42.621	0					10	5	2	0	0	0	0.76283	1	16976	16976		25.45	0	1	121270			27689	1085	18747	18818	28060	28060					0.10442226588270387
NAARSQLETY	10	Unmodified	_NAARSQLETY_					0	0	0		ENSG00000168172|ENST00000307602|HOOK3;HOOK3|p.N380Tfs*13|1|0.32|ENSG00000168172|chr8:42973302-42973302|A/-|frameshift_variant;ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.7866821289062	2	576.785827	1151.5571	0.022755	1.3125E-05	1.3306	0.00076745	1.3533	0.00078057	576.7865716265738	25.652	0.14497	25.652	25.589	25.734	0					8	4	3	0	0	0	0.16745	1	8000	8000		83.647	18.49	1	91561			27690	6069	18748	18819	28061	28061					-0.012615518843631435
NAARSQLETY	10	Unmodified	_NAARSQLETY_					0	0	0		ENSG00000168172|ENST00000307602|HOOK3;HOOK3|p.N380Tfs*13|1|0.32|ENSG00000168172|chr8:42973302-42973302|A/-|frameshift_variant;ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.786376953125	2	576.785827	1151.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.755	1	25.755	25.255	26.255	0								0	0	0	0.3185	1	8236	8236		47.96	5.5634	1				27691	6069	18748	18819	28062	28062					-0.012615518843631435
NAATIKDVF	9	Unmodified	_NAATIKDVF_					0	0	0		IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Y96Mfs*11|1|0.09|ENSG00000005700|chr6:82240201-82240201|A/-|frameshift_variant;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7667541503906	2	489.766374	977.518196	-0.11175	-5.473E-05	0.28761	0.00014086	0.17586	8.6131E-05	489.76664394879305	36.968	0.081169	36.968	36.921	37.003	0					8	4	2	0	0	0	0.44949	1	12116	12116		37.508	7.1905	1	49838			27692	963	18749	18820	28063	28063					0.028537675519032746
NAATIKDVF	9	Unmodified	_NAATIKDVF_					0	0	0		IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Y96Mfs*11|1|0.09|ENSG00000005700|chr6:82240201-82240201|A/-|frameshift_variant;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.76593017578125	2	489.766374	977.518196	0.79923	0.00039144	-0.44106	-0.00021602	0.35817	0.00017542	489.76596837490285	37.278	0.22274	37.278	37.179	37.402	0					13	6	3	0	0	0	0.12834	1	14108	14108		72.879	21.687	1	125160			27693	963	18749	18820	28064	28064					0.028537675519032746
NAATIKDVF	9	Unmodified	_NAATIKDVF_					0	0	0		IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Y96Mfs*11|1|0.09|ENSG00000005700|chr6:82240201-82240201|A/-|frameshift_variant;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.76666259765625	2	489.766374	977.518196	0.60291	0.00029528	-0.22487	-0.00011013	0.37804	0.00018515	489.76685310856294	37.231	0.23747	37.231	37.155	37.392	0					12	7	3	0	0	0	0.34452	1	14564	14564		46.457	5.6786	1	242760			27694	963	18749	18820	28065	28065					0.028537675519032746
NAATIKDVF	9	Unmodified	_NAATIKDVF_					0	0	0		IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Y96Mfs*11|1|0.09|ENSG00000005700|chr6:82240201-82240201|A/-|frameshift_variant;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.76611328125	2	489.766374	977.518196	-0.5271	-0.00025816	0.026094	1.278E-05	-0.50101	-0.00024538	489.7665225156388	37.179	0.26345	37.179	37.068	37.332	0					8	5	2	0	0	0	0.070005	1	14522	14522		88.177	22.374	1	124340			27695	963	18749	18820	28066	28066					0.028537675519032746
NAATSFQVL	9	Unmodified	_NAATSFQVL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7518615722656	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.443	1	46.443	45.943	46.943	0								0	0	0	0.13425	1	18585	18585		63.534	15.618	1				27696	7639	18750	18821	28067	28067					0.010131945178045498
NACGLYMKL	9	Unmodified	_NACGLYMKL_					0	0	0		nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6;ENSG00000130700|ENST00000252997|GATA5;nc|ENSG00000136574|P43694|GATA4;ENSG00000136574|ENST00000532059|GATA4;GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant;GATA6|p.T503Dfs*5|1|0.25|ENSG00000141448|chr18:22182830-22182831|-/A|frameshift_variant	nc|ENSG00000141448|Q92908-2|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7514343261719	2	506.751356	1011.48816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.368	1	42.368	41.868	42.868	0								0	0	0	0.3119	1	16905	16905		32.812	0.85756	1				27697	4445	18751	18822	28068	28068					-0.01712630709289442
NADILFER	8	Unmodified	_NADILFER_					0	0	0			REV__tr|U7SFA7|U7SFA7_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02318PE=4SV=1	REV__tr|U7SFA7|U7SFA7_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02318PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.25579833984375	2	489.256174	976.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.106	1	35.106	34.606	35.606	0								0	0	0	1.7419	1	12480	12480		42.864	0	1		+		27698	21675	18752	18823	28069	28069					0.00860596892096055
NADLAAVQLN	10	Unmodified	_NADLAAVQLN_					0	0	0			REV__CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	REV__CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2744140625	2	514.772188	1027.52982	-1.5818	-0.00081425	1.758	0.00090495	0.1762	9.0704E-05	514.773161148934	26.879	0.3826	26.879	26.67	27.052	0					24	9	4	0	0	0	0.66185	1	8678	8678		26.693	1.1189	1	342310	+		27699	12396	18753	18824	28070	28070					0.017159645752371944
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.71832275390625	2	473.718567	945.422581	-0.018607	-8.8145E-06	-0.59219	-0.00028053	-0.6108	-0.00028935	473.7182973085551	30.902	0.32577	30.902	30.803	31.129	0					31	13	3	0	0	0	0.04067	1	9893	9893		98.582	34.375	1	354500			27700	2166	18754	18825	28071	28071					-0.052313286306457485
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7188720703125	2	473.718567	945.422581	-0.12547	-5.9438E-05	-0.33846	-0.00016033	-0.46393	-0.00021977	473.7185697634066	30.96	0.1778	30.96	30.842	31.02	0					9	4	3	0	0	0	0.10506	1	10597	10597		78.264	22.76	1	126710			27701	2166	18754	18825	28072	28072					-0.052313286306457485
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.71826171875	2	473.718567	945.422581	-0.48404	-0.0002293	-0.53721	-0.00025449	-1.0213	-0.00048379	473.7184677551897	30.951	0.31121	30.951	30.864	31.175	0					22	8	4	0	0	0	0.10506	1	10609	10609		78.264	23.487	1	768980			27702	2166	18754	18825	28073	28073					-0.052313286306457485
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.71832275390625	2	473.718567	945.422581	-0.58866	-0.00027886	-0.090542	-4.2891E-05	-0.6792	-0.00032175	473.7186262239399	31.134	0.41033	31.134	31.027	31.437	0					19	8	4	0	0	0	0.17062	1	11593	11593		65.157	22.761	1	918760			27703	2166	18754	18825	28074	28074					-0.052313286306457485
NAERGWLLLA	10	Unmodified	_NAERGWLLLA_					0	0	0		MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant;MYO15A|p.E2245Kfs*8|1|0.44|ENSG00000091536|chr17:18148533-18148533|G/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A	MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant	MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.8173828125	2	571.819473	1141.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.652	1	32.652	32.152	33.152	0								0	0	0	0.38322	1	10906	10906		35.618	4.0885	1				27704	1861	18755	18826	28075	28075					0.05924523117255376
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7460327148438	2	524.745647	1047.47674	1.855	0.00097342	-1.2066	-0.00063313	0.64848	0.00034029	524.7451970211074	19.668	0.26623	19.668	19.569	19.835	0					16	6	4	0	0	0	0.28675	1	6008	6008		68.846	0.059317	1	1275700			27705	1019	18756	18827	28076	28076					-0.045097364790763095
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7459106445312	2	524.745647	1047.47674	0.57935	0.00030401	-0.079938	-4.1947E-05	0.49941	0.00026206	524.745710665073	19.354	0.21563	19.354	19.276	19.492	0					17	6	4	0	0	0	0.026898	1	5230	5230		120.31	51.519	1	923980			27706	1019	18756	18827	28077	28077					-0.045097364790763095
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.745849609375	2	524.745647	1047.47674	1.7795	0.00093378	-1.5883	-0.00083344	0.19123	0.00010035	524.7449173283325	19.568	0.36292	19.568	19.463	19.826	0					16	7	4	0	0	0	0.073361	1	6217	6217		101.46	44.739	1	6614000			27707	1019	18756	18827	28078	28078					-0.045097364790763095
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.74609375	2	524.745647	1047.47674	1.1536	0.00060534	-0.45843	-0.00024056	0.69515	0.00036478	524.7456003645823	19.411	0.19255	19.411	19.356	19.548	0					9	4	3	0	0	0	0.041742	1	5276	5276		112.11	43.32	1	738060			27708	1019	18756	18827	28079	28079					-0.045097364790763095
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7457885742188	2	524.745647	1047.47674	1.6267	0.0008536	-1.4466	-0.0007591	0.18008	9.4498E-05	524.7450450200723	19.583	0.26454	19.583	19.476	19.741	0					16	5	4	0	0	0	0.0098546	1	6089	6089		143.37	84.592	1	6417200			27709	1019	18756	18827	28080	28080					-0.045097364790763095
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.746337890625	2	524.745647	1047.47674	3.4365	0.0018033	-2.6782	-0.0014054	0.75832	0.00039793	524.7443339485366	19.566	0.56438	19.566	19.26	19.825	0					17	11	3	0	0	0	0.026898	1	6081	6081		120.31	61.524	1	4366200			27710	1019	18756	18827	28081	28081					-0.045097364790763095
NAETKTLEKS	10	Unmodified	_NAETKTLEKS_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.7992553710938	2	560.79586	1119.57717	4.3426	0.0024353	1.3079	0.00073347	5.6505	0.0031688	560.7965591481882	38.203	0.30877	38.203	38.08	38.389	0					22	16	2	0	0	0	0.69544	1	12873	12873		22.58	0.89391	1	107720	+		27711	21034	18757	18828	28082	28082					0.02216199055578727
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.7615966796875	2	535.761289	1069.50803	1.2601	0.00067509	-1.0884	-0.0005831	0.17169	9.1985E-05	535.7606848522597	35.594	0.1438	35.594	35.517	35.661	0					10	7	2	0	0	0	0.28897	1	11662	11662		51.193	5.2204	1	82142			27712	3641	18758	18829	28083	28083					-0.023948401733377978
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.76171875	2	535.761289	1069.50803	0.63389	0.00033961	0.22171	0.00011878	0.85559	0.00045839	535.7613206371321	35.61	0.34853	35.61	35.51	35.859	0					46	17	4	0	0	0	0.046074	1	11649	11649		96.665	22.41	1	2091100			27713	3641	18758	18829	28084	28084					-0.023948401733377978
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7618408203125	2	535.761289	1069.50803	2.1918	0.0011743	-1.4145	-0.00075785	0.77732	0.00041646	535.7606464858351	35.867	0.27923	35.867	35.751	36.03	0					12	7	2	0	0	0	0.01942	1	13476	13476		122.94	38.024	1	404440			27714	3641	18758	18829	28085	28085					-0.023948401733377978
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.76171875	2	535.761289	1069.50803	0.18662	9.9984E-05	0.044672	2.3933E-05	0.23129	0.00012392	535.7611821654014	35.862	0.39489	35.862	35.739	36.134	0					39	10	6	0	0	0	0.0028263	1	13451	13451		169.65	84.737	1	15449000			27715	3641	18758	18829	28086	28086					-0.023948401733377978
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7608642578125	2	535.761289	1069.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.679	1	35.679	35.179	36.179	0								0	0	0	0.17415	1	12073	12073		54.722	15.47	1				27716	3641	18758	18829	28087	28087					-0.023948401733377978
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7615966796875	2	535.761289	1069.50803	0.29165	0.00015626	0.33724	0.00018068	0.6289	0.00033694	535.7613780573357	35.85	0.2268	35.85	35.73	35.956	0					15	6	3	0	0	0	0.22823	1	13898	13898		58.246	13.869	1	271170			27717	3641	18758	18829	28088	28088					-0.023948401733377978
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.761962890625	2	535.761289	1069.50803	1.0679	0.00057213	-0.34031	-0.00018233	0.72758	0.00038981	535.7609951300193	35.646	0.37166	35.646	35.544	35.915	0					45	14	5	0	0	0	0.013298	1	12689	12689		133.99	59.738	1	2785400			27718	3641	18758	18829	28089	28089					-0.023948401733377978
NAFEVAEKY	9	Unmodified	_NAFEVAEKY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7616577148438	2	535.761289	1069.50803	1.9038	0.00102	-1.0486	-0.00056182	0.85516	0.00045816	535.7607498390513	35.776	1.3114	35.776	35.568	36.88	0					64	26	5	0	0	0	0.026656	2	13827	13827;13998		112.3	48.088	1	27175000			27719	3641	18758	18829	28090;28091	28090					-0.023948401733377978
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(100)	0	0	1		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.7645263671875	2	535.762975	1069.5114	1.2643	0.00067738	1.0803	0.00057879	2.3446	0.0012562	535.763602064352	30.168	0.18097	30.168	30.089	30.27	0					9	6	2	0	0	0	0.037924	1	9592	9592		101.25	42.471	1	157830			27720	4211	18759	18830	28092	28092		174			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(65)	0	0	1		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7636108398438	2	535.762975	1069.5114	-0.5402	-0.00028942	1.2735	0.00068231	0.73332	0.00039289	535.7637797687804	30.217	0.23906	30.217	30.118	30.357	0					16	8	3	0	0	0	0.16806	1	9887	9887		65.465	10.689	1	257870			27721	4211	18759	18830	28093	28093		174			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(180)	0	0	1		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7635498046875	2	535.762975	1069.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.434	1	30.434	29.934	30.934	0								0	0	0	0.0059645	1	11375	11375		176.44	102.19	1				27722	4211	18759	18830	28094	28094		174			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(120)	0	0	1		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7638549804688	2	535.762975	1069.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.212	1	30.212	29.712	30.712	0								0	0	0	0.001501	1	10260	10260		124.08	33.71	1				27723	4211	18759	18830	28095	28095		174			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(83)	0	0	1		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7637939453125	2	535.762975	1069.5114	-1.3792	-0.00073891	1.861	0.00099708	0.48187	0.00025817	535.7645245225134	30.218	0.20216	30.218	30.133	30.335	0					14	5	4	0	0	0	0.085655	1	10253	10253		82.75	19.444	1	178240			27724	4211	18759	18830	28096	28096		174			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(190)	0	0	1		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7630004882812	2	535.762975	1069.5114	1.8969	0.0010163	-1.1278	-0.00060425	0.76903	0.00041202	535.7623878655576	30.385	0.84893	30.385	30.277	31.126	0					33	17	2	0	0	0	0.00073892	1	11233	11233		185.55	89.359	1	1892400			27725	4211	18759	18830	28097	28097		174			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(150)	0	0	1		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7632446289062	2	535.762975	1069.5114	3.3605	0.0018005	-3.1148	-0.0016688	0.24572	0.00013165	535.7614401599933	30.398	0.54957	30.398	30.214	30.763	0					16	11	2	0	0	0	0.0080613	1	11248	11248		145.16	68.382	1	966710			27726	4211	18759	18830	28098	28098		174			-0.02057913391013244
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.2673950195312	2	527.765517	1053.51648	0.55071	0.00029065	0.013084	6.9052E-06	0.56379	0.00029755	527.7656802001597	38.117	0.27983	38.117	38.026	38.306	0					36	16	3	0	0	0	0.037924	1	12437	12437		101.25	42.471	1	566910			27727	4211	18759	18831	28099	28099					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7659301757812	2	527.765517	1053.51648	0.10623	5.6067E-05	-0.44599	-0.00023538	-0.33976	-0.00017931	527.7655191990958	38.45	0.43664	38.45	38.349	38.786	0					32	16	4	0	0	0	0.012231	1	14588	14588		136.27	62.013	1	2911600			27728	4211	18759	18831	28100	28100					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7665405273438	2	527.765517	1053.51648	0.25667	0.00013546	-0.28558	-0.00015072	-0.028907	-1.5256E-05	527.7662483048658	38.237	0.34778	38.237	38.15	38.498	0					40	18	4	0	0	0	0.021961	1	12887	12887		118.74	49.115	1	492380			27729	4211	18759	18831	28101	28101					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7656860351562	2	527.765517	1053.51648	0.51163	0.00027002	-0.026702	-1.4092E-05	0.48492	0.00025593	527.7659247799469	38.214	0.14105	38.214	38.161	38.303	0					16	7	3	0	0	0	0.048471	1	12892	12892		95.815	23.938	1	136610			27730	4211	18759	18831	28102	28102					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7658081054688	2	527.765517	1053.51648	1.7523	0.00092481	-1.9392	-0.0010235	-0.18693	-9.8655E-05	527.7650214780468	38.419	0.51787	38.419	38.305	38.822	0					46	18	5	0	0	0	0.00324	1	15053	15053		167.23	79.474	1	3943600			27731	4211	18759	18831	28103	28103					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7649536132812	2	527.765517	1053.51648	0.28499	0.00015041	-0.47693	-0.00025171	-0.19194	-0.0001013	527.7653146872713	38.411	0.27486	38.411	38.321	38.596	0					22	9	4	0	0	0	0.056004	1	15050	15050		93.143	47.171	1	981210			27732	4211	18759	18831	28104	28104					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.765869140625	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.213	1	38.213	37.713	38.713	0								0	0	0	0.22284	1	13671	13671		47.657	6.2307	1				27733	4211	18759	18831	28105	28105					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7666015625	2	527.765517	1053.51648	-1.1896	-0.00062785	1.6993	0.00089681	0.50962	0.00026896	527.7671074475135	38.197	0.37261	38.197	38.113	38.486	0					39	18	4	0	0	0	0.0080613	1	13652	13652		145.16	73.278	1	403290			27734	4211	18759	18831	28106	28106					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7660522460938	2	527.765517	1053.51648	1.6291	0.00085978	-3.3003	-0.0017418	-1.6712	-0.00088202	527.7652981463414	38.403	0.39305	38.403	38.251	38.644	0					24	8	4	0	0	0	0.0049871	1	15086	15086		158.07	81.228	1	645100			27735	4211	18759	18831	28107	28107					-0.008136095283816758
NAFVLDKTY	9	Unmodified	_NAFVLDKTY_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7803955078125	2	535.779482	1069.54441	2.142	0.0011477	-0.65759	-0.00035232	1.4844	0.00079533	535.7791070621009	35.385	0.17732	35.385	35.31	35.488	0					10	6	2	0	0	0	0.24095	1	12599	12599		56.721	0	1	73544			27736	7941	18760	18832	28108	28108					0.0124203672337444
NAGEKFLRK	9	Unmodified	_NAGEKFLRK_					0	0	0		ZBTB41|p.H239Tfs*24|2|0.36|ENSG00000177888|chr1:197199759-197199760|-/T|frameshift_variant	ZBTB41|p.H239Tfs*24|2|0.36|ENSG00000177888|chr1:197199759-197199760|-/T|frameshift_variant	ZBTB41|p.H239Tfs*24|2|0.36|ENSG00000177888|chr1:197199759-197199760|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8099365234375	2	531.806365	1061.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.914	1	48.914	48.414	49.414	0								0	0	0	0.35377	1	19405	19405		24.519	0.31644	1				27737	23128	18761	18833	28109	28109					0.06984253945756791
NAGVMEDKE	9	Unmodified	_NAGVMEDKE_					0	0	0			REV__SNX18|p.K396N|1|0.27|ENSG00000178996|chr5:54519140-54519140|G/T|missense_variant	REV__SNX18|p.K396N|1|0.27|ENSG00000178996|chr5:54519140-54519140|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7212829589844	2	496.721307	991.42806	-1.1781	-0.00058519	0.87786	0.00043605	-0.30024	-0.00014914	496.7216155943346	35.234	0.11906	35.234	35.174	35.293	0					8	5	2	0	0	0	0.36892	1	11919	11919		44.377	5.1244	1	67623	+		27738	16758	18762	18834	28110	28110					-0.06799649838831101
NAHESKQMY	9	Unmodified	_NAHESKQMY_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2484741210938	2	554.248023	1106.48149	1.8173	0.0010073	-1.3085	-0.00072526	0.50879	0.000282	554.2475135168914	16.944	0.17096	16.944	16.858	17.029	0					9	4	3	0	0	0	0.07136	1	4704	4704		87.696	16.88	1	366850			27739	2542	18763	18835	28111	28111					-0.06748852336295386
NAHESKQMY	9	Unmodified	_NAHESKQMY_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2489013671875	2	554.248023	1106.48149	0.50671	0.00028085	0.66694	0.00036965	1.1737	0.0006505	554.2481290040573	16.89	0.16184	16.89	16.818	16.98	0					5	3	2	0	0	0	0.022525	1	4922	4922		117.81	57.88	1	121790			27740	2542	18763	18835	28112	28112					-0.06748852336295386
NAHESKQMY	9	Unmodified	_NAHESKQMY_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2486572265625	2	554.248023	1106.48149	0.95233	0.00052783	0.084517	4.6843E-05	1.0368	0.00057467	554.2479475258563	16.9	0.16038	16.9	16.796	16.957	0					5	3	2	0	0	0	0.10915	1	4786	4786		77.318	29.358	1	326060			27741	2542	18763	18835	28113	28113					-0.06748852336295386
NAIHAILLY	9	Unmodified	_NAIHAILLY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.301025390625	2	514.300384	1026.58622	1.146	0.00058941	0.081746	4.2042E-05	1.2278	0.00063145	514.3003682604451	46.482	0.12103	46.482	46.428	46.549	0					13	7	2	0	0	0	0.097811	1	17164	17164		79.939	25.175	1	76812			27742	2611	18764	18836	28114	28114					0.073986372025729
NAIHAILLY	9	Unmodified	_NAIHAILLY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3009033203125	2	514.300384	1026.58622	1.3569	0.00069784	0.15846	8.1498E-05	1.5153	0.00077933	514.3004007491385	46.45	0.1833	46.45	46.368	46.551	0					21	10	3	0	0	0	0.27781	1	17846	17846		52.299	7.7681	1	167910			27743	2611	18764	18836	28115	28115					0.073986372025729
NAIHAILLY	9	Unmodified	_NAIHAILLY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.30029296875	2	514.300384	1026.58622	1.4747	0.00075845	-0.99195	-0.00051016	0.48277	0.00024829	514.2997531154342	46.419	0.41117	46.419	46.304	46.715	0					36	18	3	0	0	0	0.18879	1	18553	18553		62.978	5.5258	1	474620			27744	2611	18764	18836	28116	28116					0.073986372025729
NAIHAILLY	9	Unmodified	_NAIHAILLY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.3004150390625	2	514.300384	1026.58622	3.1995	0.0016455	-3.3723	-0.0017344	-0.17281	-8.8877E-05	514.2984408387002	46.412	0.15137	46.412	46.321	46.473	0					11	6	2	0	0	0	0.23186	1	18579	18579		57.811	2.9167	1	102010			27745	2611	18764	18836	28117	28117					0.073986372025729
NAIIAPIALS	10	Unmodified	_NAIIAPIALS_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.7999572753906	2	491.800217	981.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.201	1	40.201	39.701	40.701	0								0	0	0	0.26105	1	14291	14291		56.721	9.0637	1		+		27746	21962	18765	18837	28118	28118					0.09435217482700864
NAIKESYDY	9	Unmodified	_NAIKESYDY_					0	0	0		EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000525244.5_1_11:85956313-85988207:+|nuORF	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7567749023438	2	551.756204	1101.49785	1.3102	0.00072288	-0.88585	-0.00048877	0.4243	0.00023411	552.2573163047364	28.596	0.13002	28.596	28.53	28.661	0					15	6	3	0	0	0	0.11898	1	8939	8939		75.043	32.647	1	178800			27747	882	18766	18838	28119	28119					-0.0488344789855546
NAIKESYDY	9	Unmodified	_NAIKESYDY_					0	0	0		EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000525244.5_1_11:85956313-85988207:+|nuORF	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7565307617188	2	551.756204	1101.49785	0.59249	0.00032691	-0.29443	-0.00016245	0.29806	0.00016446	551.7562442850956	28.831	0.28811	28.831	28.719	29.007	0					17	7	4	0	0	0	0.013878	1	10229	10229		132.76	55.984	1	817100			27748	882	18766	18838	28120	28120					-0.0488344789855546
NAIKESYDY	9	Unmodified	_NAIKESYDY_					0	0	0		EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000525244.5_1_11:85956313-85988207:+|nuORF	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.75634765625	2	551.756204	1101.49785	-0.36635	-0.00020214	0.76202	0.00042045	0.39567	0.00021831	551.7565420196521	28.579	0.10912	28.579	28.538	28.647	0					9	4	3	0	0	0	0.16806	1	9230	9230		65.465	19.493	1	106300			27749	882	18766	18838	28121	28121					-0.0488344789855546
NAIKESYDY	9	Unmodified	_NAIKESYDY_					0	0	0		EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000525244.5_1_11:85956313-85988207:+|nuORF	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7566528320312	2	551.756204	1101.49785	0.1146	6.3229E-05	0.63517	0.00035046	0.74976	0.00041369	551.7566412570516	28.854	0.26176	28.854	28.745	29.007	0					10	5	3	0	0	0	0.0086566	1	10629	10629		143.89	89.11	1	454700			27750	882	18766	18838	28122	28122					-0.0488344789855546
NAIKWNFTK	9	Unmodified	_NAIKWNFTK_					0	0	0		ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000588919.5_1_19:1105440-1106636:+|nuORF	ENST00000588919.5_1_19:1105440-1106636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.3092651367188	2	561.308741	1120.60293	1.2216	0.00068568	-0.39081	-0.00021936	0.83076	0.00046631	561.3085850925446	32.832	0.17063	32.832	32.721	32.892	0					8	3	3	0	0	0	0.24334	1	12427	12427		56.434	17.181	1	257900			27751	5990	18767	18839	28123	28123					0.0474513808849224
NAISSLLAL	9	Unmodified	_NAISSLLAL_					0	0	0		ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2713928222656	2	451.271293	900.528032	-0.13682	-6.1741E-05	-0.65531	-0.00029572	-0.79213	-0.00035747	451.2709544996485	37.003	0.084888	37.003	36.974	37.059	0					5	3	2	0	0	0	0.42902	1	13256	13256		39.253	2.0937	1	47472			27752	8451	18768	18840	28124	28124					0.07378955557271638
NAISVTTSY	9	Unmodified	_NAISVTTSY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2408752441406	2	478.24019	954.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.545	1	36.545	36.045	37.045	0								0	0	0	0.00030372	1	11988	11988		136.27	51.353	1				27753	7597	18769	18841	28125	28125					-0.013228155817159859
NAISVTTSY	9	Unmodified	_NAISVTTSY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2399597167969	2	478.24019	954.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.558	1	36.558	36.058	37.058	0								0	0	0	0.1633	1	11993	11993		56.721	16.148	1				27754	7597	18769	18841	28126	28126					-0.013228155817159859
NAISVTTSY	9	Unmodified	_NAISVTTSY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.23992919921875	2	478.24019	954.465826	0.52131	0.00024931	-0.65819	-0.00031477	-0.13687	-6.5459E-05	478.2398560234163	36.878	0.2635	36.878	36.762	37.026	0					13	7	3	0	0	0	0.0012031	1	13917	13917		180.93	72.838	1	147640			27755	7597	18769	18841	28127	28127					-0.013228155817159859
NAISVTTSY	9	Unmodified	_NAISVTTSY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2399597167969	2	478.24019	954.465826	0.42864	0.000205	-0.68317	-0.00032672	-0.25452	-0.00012172	478.23976931268254	36.867	0.23077	36.867	36.784	37.015	0					10	6	3	0	0	0	0.063823	1	13930	13930		90.37	18.492	1	225990			27756	7597	18769	18841	28128	28128					-0.013228155817159859
NAISVTTSY	9	Unmodified	_NAISVTTSY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.240478515625	2	478.24019	954.465826	-0.11664	-5.5782E-05	0.010565	5.0527E-06	-0.10607	-5.0729E-05	478.240226561914	36.843	0.33175	36.843	36.684	37.015	0					19	10	3	0	0	0	0.0033339	1	14371	14371		166.68	76.309	1	954530			27757	7597	18769	18841	28129	28129					-0.013228155817159859
NAISVTTSY	9	Unmodified	_NAISVTTSY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2402038574219	2	478.24019	954.465826	-0.0065707	-3.1424E-06	0.06982	3.3391E-05	0.063249	3.0248E-05	478.2402603668604	36.615	0.21964	36.615	36.543	36.763	0					14	10	2	0	0	0	0.0051608	1	13106	13106		157.33	49.242	1	74257			27758	7597	18769	18841	28130	28130					-0.013228155817159859
NAIVIHEVY	9	Unmodified	_NAIVIHEVY_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2877197265625	2	529.287474	1056.5604	0.48351	0.00025592	-0.8346	-0.00044174	-0.35109	-0.00018583	529.2867801192097	36.388	0.22642	36.388	36.319	36.546	0					16	11	2	0	0	0	0.35021	1	11922	11922		45.972	13.16	1	128740			27759	3820	18770	18842	28131	28131					0.03437742960295509
NAIVIHEVY	9	Unmodified	_NAIVIHEVY_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2877197265625	2	529.287474	1056.5604	0.11207	5.9317E-05	0.2308	0.00012216	0.34287	0.00018148	529.28745662351	36.672	0.34772	36.672	36.555	36.902	0					20	9	3	0	0	0	0.055856	1	13834	13834		93.195	34.966	1	677230			27760	3820	18770	18842	28132	28132					0.03437742960295509
NAIVIHEVY	9	Unmodified	_NAIVIHEVY_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2869873046875	2	529.287474	1056.5604	0.076367	4.042E-05	-0.18269	-9.6695E-05	-0.10632	-5.6275E-05	529.2871366382428	36.448	0.25847	36.448	36.318	36.576	0					24	14	3	0	0	0	0.1424	1	12340	12340		69.628	23.655	1	130950			27761	3820	18770	18842	28133	28133					0.03437742960295509
NAIVIHEVY	9	Unmodified	_NAIVIHEVY_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.287841796875	2	529.287474	1056.5604	1.739	0.00092042	-2.6039	-0.0013782	-0.8649	-0.00045778	529.2858766327633	36.644	0.64528	36.644	36.42	37.065	0					39	19	3	0	0	0	0.0406	1	14275	14275		98.629	35.323	1	917870			27762	3820	18770	18842	28134	28134					0.03437742960295509
NAIVIHEVY	9	Unmodified	_NAIVIHEVY_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.287841796875	2	529.287474	1056.5604	1.2295	0.00065076	-0.83062	-0.00043964	0.39888	0.00021112	529.2867514905302	36.437	0.14438	36.437	36.342	36.487	0					10	6	2	0	0	0	0.37197	1	13035	13035		44.117	1.6423	1	44795			27763	3820	18770	18842	28135	28135					0.03437742960295509
NAIVIHEVY	9	Unmodified	_NAIVIHEVY_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7887573242188	2	529.287474	1056.5604	-1.1746	-0.00062168	1.5235	0.00080638	0.34896	0.0001847	529.2882688158177	36.427	0.22829	36.427	36.331	36.56	0					21	10	3	0	0	0	0.2873	1	13031	13031		51.335	21.018	1	168620			27764	3820	18770	18842	28136	28136					0.03437742960295509
NAIVIHEVY	9	Unmodified	_NAIVIHEVY_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2874145507812	2	529.287474	1056.5604	1.6296	0.00086254	-4.0144	-0.0021248	-2.3848	-0.0012623	529.2855424781575	36.571	0.75723	36.571	36.362	37.12	0					25	15	2	0	0	0	0.087861	1	14237	14237		82.241	20.133	1	551590			27765	3820	18770	18842	28137	28137					0.03437742960295509
NAKDVSVSY	9	Unmodified	_NAKDVSVSY_					0	0	0		ENSG00000173597|ENST00000310613|SULT1B1;SULT1B1|p.L192Cfs*6|2|0.23|ENSG00000173597|chr4:69733435-69733435|A/-|frameshift_variant	ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.74615478515625	2	491.745639	981.476725	-0.059715	-2.9365E-05	1.894	0.00093136	1.8343	0.000902	491.746559925283	25.645	0.11473	25.645	25.539	25.654	0					5	3	2	0	0	0	0.11898	1	8176	8176		75.043	27.128	1	184600			27766	6437	18771	18843	28138	28138					-0.014754132074131121
NAKDVSVSY	9	Unmodified	_NAKDVSVSY_					0	0	0		ENSG00000173597|ENST00000310613|SULT1B1;SULT1B1|p.L192Cfs*6|2|0.23|ENSG00000173597|chr4:69733435-69733435|A/-|frameshift_variant	ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.74560546875	2	491.745639	981.476725	-2.687	-0.0013213	2.9354	0.0014435	0.24842	0.00012216	491.74733031862166	25.638	0.1258	25.638	25.561	25.687	0					7	3	3	0	0	0	0.04067	1	8170	8170		98.582	21.735	1	267910			27767	6437	18771	18843	28139	28139					-0.014754132074131121
NAKGKDAIM	9	Unmodified	_NAKGKDAIM_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3;STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.25244140625	2	474.252577	946.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.882	1	17.882	17.382	18.382	0								0	0	0	0.18645	1	5126	5126		52.937	6.9847	1				27768	2977	18772	18844	28140	28140					0.015215410200084989
NAKGQGLVR	9	Unmodified	_NAKGQGLVR_					0	0	0		ENSG00000197245|ENST00000374268|FAM110D	ENSG00000197245|ENST00000374268|FAM110D	ENSG00000197245|ENST00000374268|FAM110D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.77734375	2	471.777608	941.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.696	1	18.696	18.196	19.196	0								0	0	0	0.36266	1	4931	4931		21.96	1.013	1				27769	7439	18773	18845	28141	28141					0.0675541174019827
NAKICQNHLEQ	11	Unmodified	_NAKICQNHLEQ_					0	0	0			REV__MYO3A|p.Q1568H|1|0.15|ENSG00000095777|chr10:26203081-26203081|G/T|missense_variant	REV__MYO3A|p.Q1568H|1|0.15|ENSG00000095777|chr10:26203081-26203081|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	649.3177490234375	2	649.319511	1296.62447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.991	1	39.991	39.491	40.491	0								0	0	0	0.45674	1	12951	12951		19.104	0.84144	1		+		27770	20913	18774	18846	28142	28142					-0.011978449450680273
NALAVSTKY	9	Unmodified	_NALAVSTKY_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7659912109375	2	483.766374	965.518196	0.60787	0.00029407	-1.9462	-0.00094149	-1.3383	-0.00064742	483.7657207050384	29.575	0.30073	29.575	29.406	29.706	0					9	7	2	0	0	0	0.27123	1	10591	10591		53.089	17.888	1	350430			27771	563	18775	18847	28143	28143					0.03405767551907957
NALAVSTKY	9	Unmodified	_NALAVSTKY_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7654724121094	2	483.766374	965.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.345	1	29.345	28.845	29.845	0								0	0	0	0.19616	1	9545	9545		51.528	9.1316	1				27772	563	18775	18847	28144	28144					0.03405767551907957
NALAVSTKY	9	Unmodified	_NALAVSTKY_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7656555175781	2	483.766374	965.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.4	1	29.4	28.9	29.9	0								0	0	0	0.14881	1	9885	9885		60.118	17.722	1				27773	563	18775	18847	28145	28145					0.03405767551907957
NALEAHKPKN	10	Unmodified	_NALEAHKPKN_					0	0	0			REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.3095703125	2	561.306729	1120.59891	1.7908	0.0010052	2.5739	0.0014448	4.3647	0.0024499	561.3082269564534	32.893	0.16792	32.893	32.786	32.954	0					6	4	2	0	0	0	0.58189	1	12137	12137		36.447	2.2742	1	98748	+		27774	15532	18776	18848	28146	28146					0.04343048594796528
NALEPPCSS	9	Unmodified	_NALEPPCSS_					0	0	0			REV__ENSG00000174243|ENST00000308025|DDX23	REV__ENSG00000174243|ENST00000308025|DDX23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.204345703125	2	459.205292	916.396032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.948	1	49.948	49.448	50.448	0								0	0	0	0.38667	1	16408	16408		14.865	0	1		+		27775	16558	18777	18849	28147	28147					-0.06551017521974245
NALFLTKAP	9	Unmodified	_NALFLTKAP_					0	0	0			REV__ENST00000379951.6_1_4:109089626-109090058:-|nuORF	REV__ENST00000379951.6_1_4:109089626-109090058:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7852478027344	2	487.78711	973.559667	-2.9104	-0.0014196	-0.9831	-0.00047954	-3.8935	-0.0018992	487.7866455777991	13.559	0.05018	13.559	13.532	13.582	0					4	2	2	0	0	0	0.33044	1	2748	2748		47.657	0	1	38288	+		27776	18764	18778	18850	28148	28148					0.0718294831123103
NALMGEQALM	10	Unmodified	_NALMGEQALM_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2573852539062	2	539.257002	1076.49945	-0.14473	-7.8049E-05	-2.6104	-0.0014077	-2.7552	-0.0014857	539.2556477299903	35.783	0.11061	35.783	35.732	35.843	0					9	5	2	0	0	0	0.49411	1	12127	12127		45.972	0	1	61964	+		27777	15935	18779	18851	28149	28149					-0.03573853405828231
NALNEQRVEF	10	Unmodified	_NALNEQRVEF_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.3067016601562	2	610.306926	1218.5993	-0.71845	-0.00043848	0.56424	0.00034436	-0.15421	-9.4113E-05	610.307325832282	35.733	0.12561	35.733	35.664	35.79	0					6	3	2	0	0	0	0.18316	1	13415	13415		81.525	35.553	1	152810			27778	4171	18780	18852	28150	28150					-0.0012557647601170174
NALNEQRVEF	10	Unmodified	_NALNEQRVEF_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.3070068359375	2	610.306926	1218.5993	0.87021	0.0005311	-0.40028	-0.00024429	0.46993	0.0002868	610.3067528256524	35.71	0.19104	35.71	35.605	35.796	0					9	5	2	0	0	0	0.041183	1	13868	13868		112.3	24.599	1	240960			27779	4171	18780	18852	28151	28151					-0.0012557647601170174
NALNHTEQY	9	Unmodified	_NALNHTEQY_					0	0	0		ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2523803710938	2	545.25162	1088.48869	1.1887	0.00064814	-0.11271	-6.1455E-05	1.076	0.00058669	545.251787352981	23.664	0.13783	23.664	23.586	23.723	0					9	4	3	0	0	0	0.085655	1	6869	6869		82.75	29.814	1	122040			27780	4724	18781	18853	28152	28152					-0.05201796464257313
NALNHTEQY	9	Unmodified	_NALNHTEQY_					0	0	0		ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2523193359375	2	545.25162	1088.48869	0.39459	0.00021515	1.2716	0.00069332	1.6661	0.00090847	545.2522896019448	23.957	0.2269	23.957	23.863	24.09	0					10	5	3	0	0	0	0.021961	1	7993	7993		118.74	36.503	1	905860			27781	4724	18781	18853	28153	28153					-0.05201796464257313
NALNHTEQY	9	Unmodified	_NALNHTEQY_					0	0	0		ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.2525024414062	2	545.25162	1088.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.71	1	23.71	23.21	24.21	0								0	0	0	0.29356	1	7160	7160		36.447	2.9312	1				27782	4724	18781	18853	28154	28154					-0.05201796464257313
NALNHTEQY	9	Unmodified	_NALNHTEQY_					0	0	0		ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.252685546875	2	545.25162	1088.48869	-1.4971	-0.00081629	3.212	0.0017514	1.7149	0.00093507	545.2530492042246	23.74	0.1287	23.74	23.665	23.794	0					7	3	3	0	0	0	0.11898	1	7289	7289		75.043	30.927	1	198950			27783	4724	18781	18853	28155	28155					-0.05201796464257313
NALNHTEQY	9	Unmodified	_NALNHTEQY_					0	0	0		ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2525024414062	2	545.25162	1088.48869	3.7273	0.0020323	-1.4575	-0.00079473	2.2697	0.0012376	545.2507965571046	23.854	0.21544	23.854	23.796	24.012	0					10	4	3	0	0	0	0.048471	1	8160	8160		95.815	31.608	1	1241200			27784	4724	18781	18853	28156	28156					-0.05201796464257313
NALREVYV	8	Unmodified	_NALREVYV_					0	0	0		WEE1|p.A349V|1|0.33|ENSG00000166483|chr11:9577168-9577168|C/T|missense_variant	WEE1|p.A349V|1|0.33|ENSG00000166483|chr11:9577168-9577168|C/T|missense_variant	WEE1|p.A349V|1|0.33|ENSG00000166483|chr11:9577168-9577168|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.26678466796875	2	482.266542	962.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.843	1	32.843	32.343	33.343	0								0	0	0	1.7419	1	10987	10987		42.474	0	1				27785	23116	18782	18854	28157	28157					0.03577187271753246
NAMEDAQTL	9	Unmodified	_NAMEDAQTL_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7222595214844	2	496.721307	991.42806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.461	1	35.461	34.961	35.961	0								0	0	0	0.25587	1	13743	13743		42.864	10.909	1				27786	7410	18783	18855	28158	28158					-0.06799649838819732
NAMEDAQTL	9	Unmodified	_NAMEDAQTL_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7208251953125	2	496.721307	991.42806	0.7635	0.00037925	-1.4157	-0.00070323	-0.65223	-0.00032398	496.72077087759925	35.461	0.33214	35.461	35.352	35.684	0					21	9	4	0	0	0	0.22823	1	13769	13769		58.246	5.3095	1	351440			27787	7410	18783	18855	28159	28159					-0.06799649838819732
NAMEDAQTL	9	Unmodified	_NAMEDAQTL_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7210388183594	2	496.721307	991.42806	-0.69021	-0.00034284	0.27324	0.00013572	-0.41697	-0.00020712	496.7214162390731	35.39	0.27244	35.39	35.279	35.552	0					8	5	2	0	0	0	0.13109	1	13669	13669		72.243	23.032	1	379610			27788	7410	18783	18855	28160	28160					-0.06799649838819732
NAMNMQETY	9	Unmodified	_NAMNMQETY_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.22119140625	2	551.220617	1100.42668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.45	1	35.45	34.95	35.95	0								0	0	0	0.04624	1	13295	13295		87.696	36.361	1				27789	2854	18784	18856	28161	28161					-0.11951607199216596
NAMNMQETY	9	Unmodified	_NAMNMQETY_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.221435546875	2	551.220617	1100.42668	0.28652	0.00015793	0.62406	0.00034399	0.91057	0.00050193	551.2211837234111	35.214	0.16742	35.214	35.125	35.293	0					17	7	3	0	0	0	0.063171	1	11900	11900		90.601	44.649	1	181520			27790	2854	18784	18856	28162	28162					-0.11951607199216596
NAMNMQETY	9	Unmodified	_NAMNMQETY_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.220947265625	2	551.220617	1100.42668	1.6448	0.00090662	-1.6735	-0.00092249	-0.028794	-1.5872E-05	551.2200116148614	35.428	0.29441	35.428	35.318	35.613	0					25	8	4	0	0	0	0.022525	1	13718	13718		117.81	67.787	1	880360			27791	2854	18784	18856	28163	28163					-0.11951607199216596
NAMNMQETY	9	Unmodified	_NAMNMQETY_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2219848632812	2	551.220617	1100.42668	1.15	0.00063393	-0.039392	-2.1714E-05	1.1106	0.00061221	551.220751719291	35.197	0.17635	35.197	35.115	35.291	0					13	5	3	0	0	0	0.16806	1	12528	12528		65.465	24.893	1	95765			27792	2854	18784	18856	28164	28164					-0.11951607199216596
NAMNMQETY	9	Unmodified	_NAMNMQETY_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2208251953125	2	551.220617	1100.42668	-1.3621	-0.0007508	1.5232	0.00083961	0.16112	8.8814E-05	551.2215184388864	35.186	0.17994	35.186	35.105	35.285	0					9	5	2	0	0	0	0.12834	1	12524	12524		72.879	25.222	1	95605			27793	2854	18784	18856	28165	28165					-0.11951607199216596
NAMNMQETY	9	Unmodified	_NAMNMQETY_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2208251953125	2	551.220617	1100.42668	1.8168	0.0010014	-1.7274	-0.00095215	0.089405	4.9282E-05	551.2198757325536	35.343	0.32187	35.343	35.213	35.535	0					19	6	4	0	0	0	0.026538	1	13641	13641		112.41	46.608	1	545130			27794	2854	18784	18856	28166	28166					-0.11951607199216596
NAMSRALIG	9	Unmodified	_NAMSRALIG_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7559509277344	2	466.752744	931.490935	2.6376	0.0012311	3.8147	0.0017805	6.4523	0.0030116	466.75449041987895	38.735	0.21398	38.735	38.61	38.824	0					6	4	2	0	0	0	0.12239	1	15262	15262		74.255	2.9593	1	145440	+		27795	14266	18785	18857	28167	28167					0.022449607398812077
NANRIALDF	9	Unmodified	_NANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2747192382812	2	517.274898	1032.53524	1.2919	0.00066827	-0.88042	-0.00045542	0.41149	0.00021285	517.2742515788639	41.493	0.27489	41.493	41.41	41.685	0					26	13	3	0	0	0	0.16002	1	15762	15762		66.429	13.078	1	197040			27796	3754	18786	18858	28168	28168					0.02027688157704688
NANRIALDF	9	Unmodified	_NANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2747192382812	2	517.274898	1032.53524	1.5167	0.00078456	-1.081	-0.00055915	0.43577	0.00022541	517.2743036402212	41.513	0.22204	41.513	41.391	41.613	0					18	9	3	0	0	0	0.0406	1	16314	16314		98.629	32.2	1	203670			27797	3754	18786	18858	28169	28169					0.02027688157704688
NANRIALDF	9	Unmodified	_NANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2749633789062	2	517.274898	1032.53524	1.5544	0.00080404	-0.35011	-0.0001811	1.2043	0.00062293	517.2742412427483	41.409	0.50338	41.409	41.103	41.606	0					35	12	4	0	0	0	0.023928	1	16476	16476		115.49	33.254	1	600020			27798	3754	18786	18858	28170	28170					0.02027688157704688
NAPLVHATL	9	Unmodified	_NAPLVHATL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2688293457031	2	468.269084	934.523616	-0.43459	-0.00020351	-0.089079	-4.1713E-05	-0.52367	-0.00024522	468.2690648472017	32.515	0.28316	32.515	32.416	32.699	0					26	12	3	0	0	0	0.33044	1	10504	10504		47.657	18.508	1	476030			27799	1685	18787	18859	28171	28171					0.05373491134378128
NAPLVHATL	9	Unmodified	_NAPLVHATL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.26885986328125	2	468.269084	934.523616	-0.64313	-0.00030116	0.11501	5.3856E-05	-0.52812	-0.0002473	468.26916184329997	32.841	0.46334	32.841	32.656	33.119	0					27	12	3	0	0	0	0.055856	1	12072	12072		93.195	39.844	1	2483600			27800	1685	18787	18859	28172	28172					0.05373491134378128
NAPLVHATL	9	Unmodified	_NAPLVHATL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2688903808594	2	468.269084	934.523616	0.63421	0.00029698	-1.221	-0.00057178	-0.58683	-0.0002748	468.26861095973896	32.809	0.42595	32.809	32.639	33.065	0					32	10	5	0	0	0	0.055856	1	12450	12450		93.195	36.474	1	2425700			27801	1685	18787	18859	28173	28173					0.05373491134378128
NAPLVHATL	9	Unmodified	_NAPLVHATL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.26885986328125	2	468.269084	934.523616	-1.0615	-0.00049706	0.86994	0.00040737	-0.19153	-8.9689E-05	468.26945790362674	32.753	0.24737	32.753	32.627	32.875	0					14	6	3	0	0	0	0.16002	1	12483	12483		66.429	22.312	1	359220			27802	1685	18787	18859	28174	28174					0.05373491134378128
NAPLVHATL	9	Unmodified	_NAPLVHATL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2690734863281	2	468.269084	934.523616	-2.1655	-0.001014	1.747	0.00081806	-0.4185	-0.00019597	468.269855242032	32.543	0.2869	32.543	32.44	32.727	0					20	9	3	0	0	0	0.41113	1	11313	11313		40.778	1.972	1	414300			27803	1685	18787	18859	28175	28175					0.05373491134378128
NAPLVNVTL	9	Unmodified	_NAPLVNVTL_					0	0	0		ENST00000600463.1_1_19:18285864-18288180:+|nuORF;ENSG00000216490|ENST00000407280|IFI30	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7763671875	2	470.776742	939.538931	0.60219	0.0002835	-2.4855	-0.0011701	-1.8833	-0.00088662	470.7757262769364	48.774	0.13994	48.774	48.7	48.84	0					11	8	2	0	0	0	0.28897	1	18419	18419		51.193	10.415	1	33905			27804	7839	18788	18860	28176	28176					0.0667435793156983
NAPLVNVTL	9	Unmodified	_NAPLVNVTL_					0	0	0		ENST00000600463.1_1_19:18285864-18288180:+|nuORF;ENSG00000216490|ENST00000407280|IFI30	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.77703857421875	2	470.776742	939.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.694	1	48.694	48.194	49.194	0								0	0	0	0.10319	1	19334	19334		70.816	33.005	1				27805	7839	18788	18860	28177	28177					0.0667435793156983
NAPLVNVTL	9	Unmodified	_NAPLVNVTL_					0	0	0		ENST00000600463.1_1_19:18285864-18288180:+|nuORF;ENSG00000216490|ENST00000407280|IFI30	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.77655029296875	2	470.776742	939.538931	0.54811	0.00025804	-0.89454	-0.00042113	-0.34643	-0.00016309	470.7762883248885	48.679	0.28222	48.679	48.608	48.89	0					19	14	2	0	0	0	0.078509	1	19332	19332		85.161	21.855	1	281780			27806	7839	18788	18860	28178	28178					0.0667435793156983
NAPLVNVTL	9	Unmodified	_NAPLVNVTL_					0	0	0		ENST00000600463.1_1_19:18285864-18288180:+|nuORF;ENSG00000216490|ENST00000407280|IFI30	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENST00000600463.1_1_19:18285864-18288180:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7765808105469	2	470.776742	939.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.681	1	48.681	48.181	49.181	0								0	0	0	0.25587	1	19328	19328		42.864	16.068	1				27807	7839	18788	18860	28179	28179					0.0667435793156983
NAPQLAEPY	9	Unmodified	_NAPQLAEPY_					0	0	0		nc|ENSG00000139880|Q86UP0-3|CDH24;ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0|CDH24	nc|ENSG00000139880|Q86UP0-3|CDH24	nc|ENSG00000139880|Q86UP0-3|CDH24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7476501464844	2	501.748182	1001.48181	-0.94824	-0.00047578	1.2063	0.00060526	0.25806	0.00012948	501.74859700076763	31.912	0.21466	31.912	31.837	32.052	0					13	8	2	0	0	0	0.24095	1	10606	10606		56.721	1.2168	1	138800			27808	4358	18789	18861	28180	28180					-0.018871093448069587
NAPQLAEPY	9	Unmodified	_NAPQLAEPY_					0	0	0		nc|ENSG00000139880|Q86UP0-3|CDH24;ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0|CDH24	nc|ENSG00000139880|Q86UP0-3|CDH24	nc|ENSG00000139880|Q86UP0-3|CDH24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7486572265625	2	501.748182	1001.48181	0.14409	7.2299E-05	0.03749	1.8811E-05	0.18159	9.111E-05	501.74826634127913	31.911	0.12682	31.911	31.84	31.967	0					8	4	2	0	0	0	0.36892	1	11038	11038		44.377	1.9027	1	74006			27809	4358	18789	18861	28181	28181					-0.018871093448069587
NAPRPRYMPT	10	Unmodified	_NAPRPRYMPT_					0	0	0			REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF	REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.807373046875	2	601.808582	1201.60261	0.29937	0.00018016	-3.5355	-0.0021277	-3.2361	-0.0019475	601.806362702037	29.636	0.38543	29.636	29.472	29.858	0					14	10	2	0	0	0	0.47859	1	9985	9985		47.657	9.8458	1	62246	+		27810	13089	18790	18862	28182	28182					0.009873950970131773
NAPTVAAPT	9	Unmodified	_NAPTVAAPT_					0	0	0		ENST00000477143.5_1_16:319270-321397:-|nuORF;nc|ENSG00000076344|O94810-3|RGS11;nc|ENSG00000076344|O94810-2|RGS11;ENSG00000076344|ENST00000397770|RGS11	ENST00000477143.5_1_16:319270-321397:-|nuORF	ENST00000477143.5_1_16:319270-321397:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.2247314453125	2	421.224342	840.434132	-0.035628	-1.5007E-05	0.26942	0.00011349	0.23379	9.8479E-05	421.22432291762095	20.43	0.34911	20.43	20.22	20.569	0					12	8	2	0	0	0	0.54267	1	5723	5723		27.882	5.9224	1	37763			27811	1559	18791	18863	28183	28183					0.0075323645500020575
NAQKLATL	8	Unmodified	_NAQKLATL_					0	0	0			REV__tr|U7SRU9|U7SRU9_FUSNUCobaltABCtransporter,permeaseCbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01438PE=4SV=1	REV__tr|U7SRU9|U7SRU9_FUSNUCobaltABCtransporter,permeaseCbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01438PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.7554016113281	2	429.75581	857.497067	0.19577	8.4135E-05	-1.5496	-0.00066594	-1.3538	-0.00058181	429.75524313925786	33.793	0.2204	33.793	33.682	33.902	0					12	8	2	0	0	0	0.58597	1	11020	11020		51.335	1.8939	1	85645	+		27812	21858	18792	18864	28184	28184					0.06261802243045622
NAQNITVIVQ	10	Unmodified	_NAQNITVIVQ_					0	0	0		ENSG00000081014|ENST00000261842|AP4E1;nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENST00000558439.5_1_15:51226794-51242057:+|nuORF	ENSG00000081014|ENST00000261842|AP4E1	ENSG00000081014|ENST00000261842|AP4E1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3087158203125	2	550.308938	1098.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.246	1	30.246	29.746	30.746	0								0	0	0	0.4044	1	10275	10275		29.17	0.020503	1				27813	1650	18793	18865	28185	28185					0.05796513017685356
NAQQVQIHQ	9	Unmodified	_NAQQVQIHQ_					0	0	0		nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP	nc|ENSG00000172530|Q8N9N5-3|BANP	nc|ENSG00000172530|Q8N9N5-3|BANP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7789306640625	2	533.275429	1064.53631	-1.3011	-0.00069387	1.9528	0.0010414	0.65165	0.00034751	533.7791931999293	31.64	0.20368	31.64	31.503	31.707	0					8	5	2	0	0	0	0.51817	1	10933	10933		30.504	4.9296	1	244480			27814	6367	18794	18866	28186	28186					0.006619025266218159
NAQRQDIAF	9	Unmodified	_NAQRQDIAF_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;ANXA2|p.S64I|1|0.3|ENSG00000182718|chr15:60364481-60364481|C/A|missense_variant;ANXA2|p.A74T|1|0.39|ENSG00000182718|chr15:60364452-60364452|C/T|missense_variant	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7710571289062	2	531.76998	1061.52541	-0.23724	-0.00012616	1.0918	0.00058059	0.85456	0.00045443	531.7706575832551	30.312	0.23304	30.312	30.247	30.48	0					16	7	3	0	0	0	0.16806	1	9950	9950		65.465	9.0316	1	198100			27815	6915	18795	18867	28187	28187					-0.0028949984766768466
NAQRQDIAF	9	Unmodified	_NAQRQDIAF_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;ANXA2|p.S64I|1|0.3|ENSG00000182718|chr15:60364481-60364481|C/A|missense_variant;ANXA2|p.A74T|1|0.39|ENSG00000182718|chr15:60364452-60364452|C/T|missense_variant	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.770263671875	2	531.76998	1061.52541	1.17	0.00062216	-0.51727	-0.00027507	0.65272	0.0003471	531.7698009670104	30.344	0.19069	30.344	30.251	30.442	0					8	4	2	0	0	0	0.27249	1	10331	10331		52.937	8.5595	1	195920			27816	6915	18795	18867	28188	28188					-0.0028949984766768466
NARKLERDSLR	11	Unmodified	_NARKLERDSLR_					0	0	0		ENSG00000180329|ENST00000315286|CCDC43	ENSG00000180329|ENST00000315286|CCDC43	ENSG00000180329|ENST00000315286|CCDC43	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.259521484375	3	453.260141	1356.75859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.897	1	43.897	43.397	44.397	0								0	0	0	0.42918	1	17138	17138		30.569	5.4429	1				27817	6798	18796	18868	28189	28189					0.09448556871961955
NARSSLAGPH	10	Unmodified	_NARSSLAGPH_					0	0	0			REV__ENST00000355040.8_1_11:64001470-64001653:+|nuORF	REV__ENST00000355040.8_1_11:64001470-64001653:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2641296386719	2	505.262322	1008.51009	3.7017	0.0018704	0.60376	0.00030506	4.3055	0.0021754	505.26260587141354	13.959	0.15364	13.959	13.906	14.059	0					18	7	3	0	0	0	0.58896	1	2944	2944		35.618	0.41757	1	655180	+		27818	18506	18797	18869	28190	28190					0.006176333551479729
NASKGIYAM	9	Unmodified	_NASKGIYAM_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7393493652344	2	477.739302	953.464052	0.012254	5.8541E-06	-0.51967	-0.00024827	-0.50742	-0.00024241	477.73906090468694	28.481	0.17713	28.481	28.407	28.584	0					9	7	2	0	0	0	0.27249	1	8910	8910		52.937	17.785	1	80401			27819	4519	18798	18870	28191	28191					-0.014541478713226752
NASKGIYAM	9	Unmodified	_NASKGIYAM_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7391662597656	2	477.739302	953.464052	0.41197	0.00019681	-0.79279	-0.00037875	-0.38082	-0.00018193	477.7390305370207	28.789	0.37589	28.789	28.526	28.902	0					20	9	4	0	0	0	0.056004	1	10214	10214		93.143	8.2277	1	457660			27820	4519	18798	18870	28192	28192					-0.014541478713226752
NASKGIYAM	9	Unmodified	_NASKGIYAM_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7396545410156	2	477.739302	953.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.809	1	28.809	28.309	29.309	0								0	0	0	0.15687	1	10598	10598		58.23	10.573	1				27821	4519	18798	18870	28193	28193					-0.014541478713226752
NASKGIYAM	9	Unmodified	_NASKGIYAM_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7384338378906	2	477.739302	953.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.595	1	28.595	28.095	29.095	0								0	0	0	0.1633	1	9512	9512		56.721	7.2795	1				27822	4519	18798	18870	28194	28194					-0.014541478713226752
NASKGIYAM	9	Unmodified	_NASKGIYAM_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.7391357421875	2	477.739302	953.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.738	1	28.738	28.238	29.238	0								0	0	0	0.099216	1	10447	10447		71.877	13.096	1				27823	4519	18798	18870	28195	28195					-0.014541478713226752
NASKGIYAM	9	Unmodified	_NASKGIYAM_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.73944091796875	2	477.739302	953.464052	0.83344	0.00039817	2.6325	0.0012576	3.4659	0.0016558	477.7403065498604	28.718	0.56543	28.718	28.443	29.009	0					12	11	2	0	0	0	0.13267	1	10464	10464		71.877	8.899	1	465890			27824	4519	18798	18870	28196	28196					-0.014541478713226752
NASLQFEE	8	Unmodified	_NASLQFEE_					0	0	0		ENST00000367139.7_1_1:205744106-205744529:-|nuORF	ENST00000367139.7_1_1:205744106-205744529:-|nuORF	ENST00000367139.7_1_1:205744106-205744529:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.21630859375	2	469.216714	936.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.343	1	45.343	44.843	45.843	0								0	0	0	1.7419	1	17551	17551		49.442	2.6751	1				27825	8907	18799	18871	28197	28197					-0.051876751328450155
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2622680664062	2	526.261988	1050.50942	0.61786	0.00032516	2.1658	0.0011398	2.7837	0.0014649	526.2620578307179	24.219	0.42044	24.219	24.087	24.508	0					34	13	4	0	0	0	0.12834	1	7097	7097		72.879	14.097	1	3331000			27826	6005	18800	18872	28198	28198					-0.01381206084556652
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2622680664062	2	526.261988	1050.50942	0.10033	5.2802E-05	1.5169	0.00079829	1.6172	0.00085109	526.2620505284015	24.486	0.85419	24.486	24.388	25.242	0					45	20	3	0	0	0	0.10506	1	8237	8237		78.264	11.835	1	20453000			27827	6005	18800	18872	28199	28199					-0.01381206084556652
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2623901367188	2	526.261988	1050.50942	0.4515	0.00023761	0.038941	2.0493E-05	0.49044	0.0002581	526.2620828173879	24.22	0.94962	24.22	24.119	25.069	0					70	31	5	0	0	0	0.12834	2	7360	7360;7512		72.879	7.0761	1	8000000			27828	6005	18800	18872	28200;28201	28200					-0.01381206084556652
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2623901367188	2	526.261988	1050.50942	1.7661	0.00092944	-1.1969	-0.00062988	0.56921	0.00029955	526.2620522038878	24.458	1.066	24.458	24.343	25.409	0					47	21	3	0	0	0	0.082776	1	8548	8548		83.647	25.401	1	61300000			27829	6005	18800	18872	28202	28202					-0.01381206084556652
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2625732421875	2	526.261988	1050.50942	1.2036	0.00063343	-0.3928	-0.00020671	0.81084	0.00042671	526.2619201922932	24.304	0.43679	24.304	24.172	24.609	0					26	10	4	0	0	0	0.24334	1	7531	7531		56.434	15.007	1	1869400			27830	6005	18800	18872	28203	28203					-0.01381206084556652
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.26220703125	2	526.261988	1050.50942	-1.2233	-0.0006438	1.8359	0.00096617	0.61257	0.00032237	526.2627703291406	24.299	0.97235	24.299	24.155	25.128	0					45	22	3	0	0	0	0.10506	1	7541	7541		78.264	9.4176	1	8661500			27831	6005	18800	18872	28204	28204					-0.01381206084556652
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2621459960938	2	526.261988	1050.50942	1.6278	0.00085664	-1.3192	-0.00069426	0.30855	0.00016238	526.2615036923686	24.422	1.4051	24.422	24.262	25.667	0					59	28	5	0	0	0	0.070005	1	8408	8408		88.177	12.007	1	23670000			27832	6005	18800	18872	28205	28205					-0.01381206084556652
NASRDQVVY	9	Unmodified	_NASRDQVVY_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2630615234375	2	526.261988	1050.50942	3.4589	0.0018203	-2.6289	-0.0013835	0.83002	0.00043681	526.2608002073765	24.405	0.94982	24.405	24.246	25.196	0					44	19	3	0	0	0	0.070005	1	8423	8423		88.177	29.931	1	46838000			27833	6005	18800	18872	28206	28206					-0.01381206084556652
NASSVVLGAPL	11	Unmodified	_NASSVVLGAPL_					0	0	0		ENST00000558801.1_1_15:84960100-84962592:-|nuORF;ENST00000558282.5_1_15:85734698-85737265:+|nuORF;ENST00000333235.3_1_Y:27624438-27626982:+|nuORF;ENST00000560634.1_1_15:84855599-84858179:+|nuORF	ENST00000558801.1_1_15:84960100-84962592:-|nuORF	ENST00000558801.1_1_15:84960100-84962592:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.19720458984375	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.3	1	40.3	39.8	40.8	0								0	0	0	0.45674	1	14329	14329		19.263	4.3978	1				27834	8686	18801	18873	28207	28207					0.058737256147196604
NATKAYEM	8	Unmodified	_NATKAYEM_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.21527099609375	2	464.21566	926.416767	-0.48366	-0.00022452	-0.83064	-0.0003856	-1.3143	-0.00061012	464.21548063348183	23.092	0.26137	23.092	22.99	23.252	0					13	5	4	0	0	0	0.34592	1	7790	7790		77.318	21.813	1	480490			27835	4328	18802	18874	28208	28208					-0.049384271423150494
NAVAGAVKY	9	Unmodified	_NAVAGAVKY_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000529863.1_1_11:47861610-47869870:-|nuORF;nc|ENSG00000030066|Q12769-2|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.7477722167969	2	446.747985	891.481417	-0.41689	-0.00018624	-0.54867	-0.00024512	-0.96555	-0.00043136	446.748020239295	26.2	0.13454	26.2	26.112	26.247	0					9	3	3	0	0	0	0.063823	1	9014	9014		90.37	27.064	1	689320			27836	1145	18803	18875	28209	28209					0.03133515726005953
NAVAGAVKY	9	Unmodified	_NAVAGAVKY_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000529863.1_1_11:47861610-47869870:-|nuORF;nc|ENSG00000030066|Q12769-2|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.7476501464844	2	446.747985	891.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.982	1	25.982	25.482	26.482	0								0	0	0	0.082437	1	8115	8115		76.774	10.971	1				27837	1145	18803	18875	28210	28210					0.03133515726005953
NAVAGAVKY	9	Unmodified	_NAVAGAVKY_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000529863.1_1_11:47861610-47869870:-|nuORF;nc|ENSG00000030066|Q12769-2|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.7479248046875	2	446.747985	891.481417	-0.42518	-0.00018995	-0.43902	-0.00019613	-0.86421	-0.00038608	446.7479721214991	26.044	0.14318	26.044	25.95	26.093	0					6	3	2	0	0	0	0.12239	1	8323	8323		74.255	27.489	1	128620			27838	1145	18803	18875	28211	28211					0.03133515726005953
NAVAGAVKY	9	Unmodified	_NAVAGAVKY_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000529863.1_1_11:47861610-47869870:-|nuORF;nc|ENSG00000030066|Q12769-2|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.7476501464844	2	446.747985	891.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.195	1	26.195	25.695	26.695	0								0	0	0	0.082437	1	9224	9224		76.774	17.992	1				27839	1145	18803	18875	28212	28212					0.03133515726005953
NAVESGRAL	9	Unmodified	_NAVESGRAL_					0	0	0		PDP1|p.G254Lfs*70|1|0.09|ENSG00000164951|chr8:93922816-93922817|-/TT|frameshift_variant;ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	PDP1|p.G254Lfs*70|1|0.09|ENSG00000164951|chr8:93922816-93922817|-/TT|frameshift_variant	PDP1|p.G254Lfs*70|1|0.09|ENSG00000164951|chr8:93922816-93922817|-/TT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7457580566406	2	458.745973	915.477394	-0.15804	-7.2501E-05	-0.5202	-0.00023864	-0.67824	-0.00031114	458.7456998612799	22.719	0.11632	22.719	22.66	22.777	0					4	2	2	0	0	0	0.15558	1	7743	7743		66.962	0.53265	1	188910			27840	5748	18804	18876	28213	28213					0.016274262322895083
NAVFGRSADL	10	Unmodified	_NAVFGRSADL_					0	0	0			REV__ENST00000413432.2_1_2:242383334-242383583:+|nuORF	REV__ENST00000413432.2_1_2:242383334-242383583:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.272705078125	2	525.272355	1048.53016	0.58474	0.00030715	0.4255	0.0002235	1.0102	0.00053065	525.2724806356215	27.679	0.18445	27.679	27.585	27.769	0					10	6	2	0	0	0	0.32758	1	8840	8840		64.207	0	1	198060	+		27841	19015	18805	18877	28214	28214					0.007833842950731196
NAVKDFTSF	9	Unmodified	_NAVKDFTSF_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2;TET2|p.M695Tfs*4|1|0.41|ENSG00000168769|chr4:105236026-105236029|TGTC/-|frameshift_variant;TET2|p.N202Tfs*5|1|0.32|ENSG00000168769|chr4:105234543-105234543|A/-|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.75634765625	2	514.756007	1027.49746	0.024792	1.2762E-05	0.21045	0.00010833	0.23525	0.00012109	514.756077344095	39.878	0.28542	39.878	39.79	40.075	0					22	10	3	0	0	0	0.11898	1	15171	15171		75.043	18.322	1	651380			27842	6121	18806	18878	28215	28215					-0.015188228277793314
NAVKDFTSF	9	Unmodified	_NAVKDFTSF_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2;TET2|p.M695Tfs*4|1|0.41|ENSG00000168769|chr4:105236026-105236029|TGTC/-|frameshift_variant;TET2|p.N202Tfs*5|1|0.32|ENSG00000168769|chr4:105234543-105234543|A/-|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.7560424804688	2	514.756007	1027.49746	-0.15944	-8.2074E-05	1.0785	0.00055518	0.9191	0.00047311	514.7564834139257	39.646	0.15754	39.646	39.578	39.736	0					12	8	2	0	0	0	0.07136	1	13324	13324		87.696	40.039	1	66952			27843	6121	18806	18878	28216	28216					-0.015188228277793314
NAVKDFTSF	9	Unmodified	_NAVKDFTSF_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2;TET2|p.M695Tfs*4|1|0.41|ENSG00000168769|chr4:105236026-105236029|TGTC/-|frameshift_variant;TET2|p.N202Tfs*5|1|0.32|ENSG00000168769|chr4:105234543-105234543|A/-|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7559814453125	2	514.756007	1027.49746	1.3879	0.00071441	-0.98716	-0.00050815	0.4007	0.00020626	514.7555815753448	39.839	0.43628	39.839	39.65	40.086	0					37	15	4	0	0	0	0.13726	1	15674	15674		70.816	30.038	1	455470			27844	6121	18806	18878	28217	28217					-0.015188228277793314
NAVKDFTSF	9	Unmodified	_NAVKDFTSF_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2;TET2|p.M695Tfs*4|1|0.41|ENSG00000168769|chr4:105236026-105236029|TGTC/-|frameshift_variant;TET2|p.N202Tfs*5|1|0.32|ENSG00000168769|chr4:105234543-105234543|A/-|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7557983398438	2	514.756007	1027.49746	-0.49166	-0.00025309	0.5274	0.00027148	0.03574	1.8397E-05	514.7562730126964	39.842	0.23914	39.842	39.752	39.992	0					19	8	3	0	0	0	0.11898	1	15679	15679		75.043	29.091	1	333920			27845	6121	18806	18878	28218	28218					-0.015188228277793314
NAVKLDDTY	9	Unmodified	_NAVKLDDTY_					0	0	0		DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant;nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7	DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7601318359375	2	519.758746	1037.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.222	1	30.222	29.722	30.722	0								0	0	0	0.14881	1	9608	9608		60.118	12.461	1				27846	829	18807	18879	28219	28219					-0.014311440359733751
NAVKLDDTY	9	Unmodified	_NAVKLDDTY_					0	0	0		DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant;nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7	DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7589111328125	2	519.758746	1037.50294	1.4074	0.00073153	-1.5433	-0.00080213	-0.13582	-7.0592E-05	519.7581510136798	30.489	0.21888	30.489	30.405	30.624	0					9	5	3	0	0	0	0.048471	1	11011	11011		95.815	27.028	1	304420			27847	829	18807	18879	28220	28220					-0.014311440359733751
NAVKLDDTY	9	Unmodified	_NAVKLDDTY_					0	0	0		DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant;nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7	DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.759033203125	2	519.758746	1037.50294	1.6145	0.00083917	-2.0393	-0.00106	-0.42482	-0.0002208	519.7582322997876	30.433	0.20141	30.433	30.376	30.578	0					8	4	2	0	0	0	0.1424	1	11281	11281		69.628	6.3214	1	410100			27848	829	18807	18879	28221	28221					-0.014311440359733751
NAVKVTPSL	9	Unmodified	_NAVKVTPSL_					0	0	0		ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant;ENSG00000112379|ENST00000251691|ARFGEF3;ARFGEF3|p.E1064Sfs*10|1|0.29|ENSG00000112379|chr6:138291869-138291869|C/-|frameshift_variant;ARFGEF3|p.P355Hfs*11|1|0.44|ENSG00000112379|chr6:138255724-138255724|C/-|frameshift_variant	ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant	ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7765808105469	2	464.776742	927.538931	-0.48663	-0.00022617	0.99629	0.00046305	0.50966	0.00023688	464.77700329104607	30.121	0.21615	30.121	29.947	30.163	0					7	4	2	0	0	0	0.21263	1	11096	11096		60.118	12.461	1	120560			27849	194	18808	18880	28222	28222					0.07226357931563143
NAVNLAIKY	9	Unmodified	_NAVNLAIKY_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2900390625	2	503.290017	1004.56548	-0.064951	-3.2689E-05	-0.35305	-0.00017769	-0.418	-0.00021038	503.2898444546013	37.712	0.21979	37.712	37.628	37.848	0					12	7	2	0	0	0	0.12239	1	14303	14303		74.255	13.283	1	443780			27850	7574	18809	18881	28223	28223					0.06338046822895649
NAVNLAIKY	9	Unmodified	_NAVNLAIKY_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2899169921875	2	503.290017	1004.56548	-0.88166	-0.00044373	0.92518	0.00046564	0.043526	2.1906E-05	503.2904266142971	37.477	0.10662	37.477	37.423	37.529	0					10	5	2	0	0	0	0.0792	1	12669	12669		84.916	33.58	1	71355			27851	7574	18809	18881	28224	28224					0.06338046822895649
NAVNLSWKH	9	Unmodified	_NAVNLSWKH_					0	0	0		nc|ENSG00000178562|P10747-4|CD28	nc|ENSG00000178562|P10747-4|CD28	nc|ENSG00000178562|P10747-4|CD28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.785400390625	2	534.78289	1067.55123	0.17236	9.2175E-05	-0.85029	-0.00045472	-0.67793	-0.00036254	534.7824456409264	22.325	0.58395	22.325	22.061	22.645	0					41	13	6	0	0	0	0.13726	1	7185	7185		64.207	3.2353	1	4325100			27852	11662	18810	18882	28225	28225					0.020153943946070285
NAVSVHHAL	9	Unmodified	_NAVSVHHAL_					0	0	0		PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000518315.5_1_8:18393255-18632402:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2558288574219	2	474.256508	946.498464	-0.26709	-0.00012667	-0.5186	-0.00024595	-0.7857	-0.00037262	474.2563044129014	20.786	0.092667	20.786	20.721	20.814	0					6	3	2	0	0	0	0.032052	1	5620	5620		79.451	28.116	1	66332			27853	5150	18811	18883	28226	28226					0.023074363318073665
NAVSVHHAL	9	Unmodified	_NAVSVHHAL_					0	0	0		PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000518315.5_1_8:18393255-18632402:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2566223144531	2	474.256508	946.498464	-0.48404	-0.00022956	0.25746	0.0001221	-0.22658	-0.00010746	474.25656954136235	21.088	0.13782	21.088	20.997	21.135	0					8	3	3	0	0	0	0.022525	1	6654	6654		101.6	30.305	1	507700			27854	5150	18811	18883	28227	28227					0.023074363318073665
NAVVTVPAY	9	Unmodified	_NAVVTVPAY_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2556457519531	2	467.255643	932.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.149	1	41.149	40.649	41.649	0								0	0	0	0.13137	1	16348	16348		64.207	21.733	1				27855	2601	18812	18884	28228	28228					0.027783825231722403
NAVVTVPAY	9	Unmodified	_NAVVTVPAY_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2553405761719	2	467.255643	932.496732	0.6196	0.00028951	-1.023	-0.00047802	-0.40344	-0.00018851	467.2551155930514	41.141	0.62241	41.141	40.748	41.371	0					14	12	2	0	0	0	0.12239	1	16322	16322		74.255	30.138	1	102230			27856	2601	18812	18884	28229	28229					0.027783825231722403
NCCKGSPLIF	10	Carbamidomethyl (C)	_NCC(Carbamidomethyl (C))KGSPLIF_	NC(0.174)C(0.826)KGSPLIF		NC(-6.8)C(6.8)KGSPLIF		0	1	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7714233398438	2	569.772819	1137.53109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.799	1	23.799	23.299	24.299	0								0	0	0	0.35368	1	7323	7323		42.396	9.5837	2		+		27857	13017	18813	18885	28230	28230	509				-0.03217860651875526
NCITQLNLLEC	11	2 Carbamidomethyl (C)	_NC(Carbamidomethyl (C))ITQLNLLEC(Carbamidomethyl (C))_	NC(1)ITQLNLLEC(1)		NC(43)ITQLNLLEC(43)		0	2	0		MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3;nc|ENSG00000154305|Q5JRA6-2|MIA3	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	689.3280639648438	2	689.328687	1376.64282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.454	1	17.454	16.954	17.954	0								0	0	0	0.36657	1	4164	4164		42.864	7.7122	1				27858	5083	18814	18886	28231	28231	205;206				-0.03043471085402416
NCKKVVDPG	9	Unmodified	_NCKKVVDPG_					0	0	0			REV__GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant	REV__GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.252197265625	2	480.252577	958.490601	-0.30453	-0.00014625	0.11633	5.5867E-05	-0.1882	-9.0384E-05	480.25257324126295	28.679	0.20384	28.679	28.56	28.764	0					7	5	2	0	0	0	0.30951	1	9559	9559		49.442	7.0454	1	107270	+		27859	12839	18815	18887	28232	28232					0.009695410200151855
NCLLVTWVTNR	11	Unmodified	_NCLLVTWVTNR_					0	0	0		ENST00000573134.1_1_18:2539001-2552773:-|nuORF;ENSG00000101574|ENST00000574538|METTL4	ENST00000573134.1_1_18:2539001-2552773:-|nuORF	ENST00000573134.1_1_18:2539001-2552773:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	659.8511962890625	2	659.850447	1317.68634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.771	1	11.771	11.271	12.271	0								0	0	0	0.45674	1	2348	2348		13.454	1.8181	1				27860	2129	18816	18888	28233	28233					0.040205064740575835
NCPHSCDPGW	10	Unmodified	_NCPHSCDPGW_					0	0	0			REV__nc|ENSG00000162591|O75095-2|MEGF6	REV__nc|ENSG00000162591|O75095-2|MEGF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2070922851562	2	558.205301	1114.39605	-0.1539	-8.5906E-05	3.4169	0.0019073	3.263	0.0018214	558.2072301818876	14.209	0.16068	14.209	14.107	14.267	0					8	3	3	0	0	0	0.70877	1	3648	3648		20.947	0.4651	1	385470	+		27861	15822	18817	18889	28234	28234					-0.15657340793632102
NCQRGSVH	8	Unmodified	_NCQRGSVH_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.70697021484375	2	450.708868	899.403183	-0.31168	-0.00014048	-0.23844	-0.00010747	-0.55012	-0.00024795	450.7073274143627	38.342	0.23251	38.342	38.213	38.445	0					14	8	2	0	0	0	0.70055	1	15013	15013		33.516	1.5607	1	371230	+		27862	13001	18818	18890	28235	28235					-0.050542401308803164
NCRSHLKQ	8	Unmodified	_NCRSHLKQ_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ZNF460|p.Y476Mfs*57|1|0.28|ENSG00000197714|chr19:57291964-57291964|C/-|frameshift_variant;ENSG00000197714|ENST00000360338|ZNF460;ZNF543|p.R406C|1|0.07|ENSG00000178229|chr19:57328678-57328678|C/T|missense_variant	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.25421142578125	2	493.253443	984.492332	0.6257	0.00030863	1.6932	0.00083519	2.3189	0.0011438	493.2538091792607	11.95	0.78283	11.95	11.819	12.601	0					41	20	4	0	0	0	0.58597	1	2543	2543		51.335	0	1	2975900			27863	7490	18819	18891	28236	28236					-0.0005340517136573908
NCSVLIREI	9	Unmodified	_NCSVLIREI_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.52593994140625	3	349.526948	1045.55902	-0.81504	-0.00028488	-1.6912	-0.00059113	-2.5063	-0.00087601	349.5262757401107	23.644	0.083483	23.644	23.593	23.676	0					6	3	2	0	0	0	0.55379	1	7124	7124		27.047	0.98393	1	130010	+		27864	13642	18820	18892	28237	28237					0.038057855998886225
NCVITILAG	9	Unmodified	_NCVITILAG_					0	0	0			REV__ENHO|p.A12T|1|0.33|ENSG00000168913|chr9:34521662-34521662|C/T|missense_variant	REV__ENHO|p.A12T|1|0.33|ENSG00000168913|chr9:34521662-34521662|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.25030517578125	2	452.252046	902.489538	0.87682	0.00039654	-3.6736	-0.0016614	-2.7967	-0.0012648	452.2503154713315	34.385	0.50058	34.385	34.134	34.635	0					21	10	3	0	0	0	0.30951	1	13165	13165		49.442	5.3247	1	703880	+		27865	12802	18821	18893	28238	28238					0.0343932665111879
NDAATRTTI	9	Unmodified	_NDAATRTTI_					0	0	0			REV__ENST00000421722.5_1_2:190656520-190720594:+|nuORF	REV__ENST00000421722.5_1_2:190656520-190720594:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.74822998046875	2	481.748713	961.482873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.045	1	19.045	18.545	19.545	0								0	0	0	0.33029	1	4852	4852		29.17	0	1		+		27866	13110	18822	18894	28239	28239					0.0005910502408141838
NDALFMIIK	9	Unmodified	_NDALFMIIK_					0	0	0			REV__tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	REV__tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7965698242188	2	532.794078	1063.5736	2.3504	0.0012523	1.4257	0.00075962	3.7762	0.0020119	532.7950716806885	41.336	0.2739	41.336	41.25	41.524	0					31	13	3	0	0	0	0.1115	1	15700	15700		76.774	2.5191	1	375650	+		27867	21855	18823	18895	28240	28240					0.04435857748012495
NDDECLPTL	9	Carbamidomethyl (C)	_NDDEC(Carbamidomethyl (C))LPTL_	NDDEC(1)LPTL		NDDEC(59)LPTL		0	1	0			REV__ENSG00000118308|ENST00000556887|IRAG2	REV__ENSG00000118308|ENST00000556887|IRAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.733642578125	2	538.731871	1075.44919	0.24055	0.00012959	2.5059	0.00135	2.7464	0.0014796	538.7335939671656	42.606	0.19675	42.606	42.515	42.712	0					17	10	2	0	0	0	0.22377	1	16112	16112		58.782	12.81	1	74208	+		27868	14217	18824	18896	28241	28241	531				-0.08551684529993508
NDEGNDEDHS	10	Unmodified	_NDEGNDEDHS_					0	0	0		PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant;ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant	PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.19287109375	2	566.194696	1130.37484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.087	1	50.087	49.587	50.587	0								0	0	0	0.4201	1	18075	18075		17.468	3.3309	1				27869	2440	18825	18897	28242	28242					-0.18513356087805732
NDFLLKTSL	9	Unmodified	_NDFLLKTSL_					0	0	0		VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7964477539062	2	525.795132	1049.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.141	1	45.141	44.641	45.641	0								0	0	0	0.24364	1	18083	18083		44.639	4.7663	1				27870	3797	18826	18898	28243	28243					0.052906097574805244
NDHPSLQVLI	10	Unmodified	_NDHPSLQVLI_					0	0	0			REV__ENST00000568515.1_1_15:66007788-66048788:-|nuORF	REV__ENST00000568515.1_1_15:66007788-66048788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2095642089844	3	379.208384	1134.60332	3.244	0.0012302	0.13932	5.2829E-05	3.3833	0.001283	379.20843367792685	37.244	1.0252	37.244	37.086	38.111	0					36	21	3	0	0	0	0.59277	1	14535	14535		39.873	1.1591	1	1135800	+		27871	12694	18827	18899	28244	28244					0.04140513017705416
NDHQDLVSV	9	Unmodified	_NDHQDLVSV_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.74609375	2	513.74617	1025.47779	0.03878	1.9923E-05	0.29582	0.00015197	0.3346	0.0001719	513.7461614079914	30.718	0.22478	30.718	30.627	30.852	0					17	9	3	0	0	0	0.42902	1	9800	9800		39.253	5.0803	1	162760			27872	4374;4202	18828	18900	28245	28245					-0.03393198838512035
NDHQDLVSV	9	Unmodified	_NDHQDLVSV_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7461547851562	2	513.74617	1025.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.972	1	30.972	30.472	31.472	0								0	0	0	0.15687	1	11225	11225		58.23	11.773	1				27873	4374;4202	18828	18900	28246	28246					-0.03393198838512035
NDIVISKL	8	Unmodified	_NDIVISKL_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2713623046875	2	451.271293	900.528032	0.65183	0.00029415	-0.98142	-0.00044289	-0.32959	-0.00014874	451.2708445757335	37.26	0.25993	37.26	37.142	37.402	0					11	7	2	0	0	0	0.16101	1	14107	14107		154.12	23.087	1	137230			27874	2779	18829	18901	28247	28247					0.07378955557271638
NDIVISKL	8	Unmodified	_NDIVISKL_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.27117919921875	2	451.271293	900.528032	-1.19	-0.00053699	0.50609	0.00022838	-0.68387	-0.00030861	451.2716192479732	37.032	0.14071	37.032	36.923	37.064	0					11	7	2	0	0	0	0.31087	1	12521	12521		81.525	19.834	1	47248			27875	2779	18829	18901	28248	28248					0.07378955557271638
NDIVISKL	8	Unmodified	_NDIVISKL_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2711181640625	2	451.271293	900.528032	0.70312	0.0003173	-2.0057	-0.0009051	-1.3025	-0.0005878	451.2702386057004	37.231	0.27205	37.231	37.12	37.392	0					17	8	3	0	0	0	0.2592	1	14544	14544		96.034	5.6638	1	482100			27876	2779	18829	18901	28249	28249					0.07378955557271638
NDIVISKL	8	Unmodified	_NDIVISKL_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2704772949219	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.159	1	37.159	36.659	37.659	0								0	0	0	1.7419	1	14503	14503		85.862	10.819	1				27877	2779	18829	18901	28250	28250					0.07378955557271638
NDIVISKL	8	Unmodified	_NDIVISKL_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2708740234375	2	451.271293	900.528032	0.87624	0.00039542	-2.6055	-0.0011758	-1.7293	-0.00078036	451.26985264671777	37.162	0.26065	37.162	37.054	37.315	0					8	5	2	0	0	0	0.29	1	14518	14518		85.862	8.5442	1	350490			27878	2779	18829	18901	28251	28251					0.07378955557271638
NDIVLYLK	8	Unmodified	_NDIVLYLK_					0	0	0		DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.D2341Tfs*111|1|0.32|ENSG00000187775|chr17:78486305-78486305|G/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;DNAH17|p.K2058Qfs*32|1|0.09|ENSG00000187775|chr17:78494691-78494692|-/G|frameshift_variant;DNAH17|p.R293W|1|0.28|ENSG00000187775|chr17:78570989-78570989|G/A|missense_variant;ENST00000589793.1_1_17:76539878-76567391:-|nuORF;DNAH17|p.R1580Gfs*23|1|0.38|ENSG00000187775|chr17:78506785-78506785|G/-|frameshift_variant	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2870178222656	2	489.286943	976.559333	0.78353	0.00038337	-0.71352	-0.00034911	0.070012	3.4256E-05	489.28672783768286	39.404	0.22315	39.404	39.342	39.565	0					14	8	3	0	0	0	0.63077	1	14995	14995		44.117	1.7207	1	241230			27879	814	18830	18902	28252	28252					0.07011528591363003
NDIVVKVL	8	Unmodified	_NDIVVKVL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2810974121094	2	450.28166	898.548768	-0.30544	-0.00013753	-0.23595	-0.00010625	-0.54139	-0.00024378	450.2815052973052	39.125	0.15622	39.125	39.044	39.2	0					16	9	2	0	0	0	0.34592	1	12718	12718		77.318	18.536	1	60521			27880	5887	18831	18903	28253	28253					0.09543545936958253
NDIVVKVL	8	Unmodified	_NDIVVKVL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.28143310546875	2	450.28166	898.548768	-0.48253	-0.00021727	0.11956	5.3836E-05	-0.36297	-0.00016344	450.28171051027067	39.44	0.21598	39.44	39.365	39.581	0					21	8	3	0	0	0	0.23144	1	15005	15005		122.18	28.17	1	446030			27881	5887	18831	18903	28254	28254					0.09543545936958253
NDIVVKVL	8	Unmodified	_NDIVVKVL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2816162109375	2	450.28166	898.548768	-1.1854	-0.00053376	1.337	0.00060202	0.15159	6.8257E-05	450.28228769313966	39.183	0.21225	39.183	39.102	39.315	0					19	12	2	0	0	0	0.26795	1	13175	13175		93.143	15.826	1	116650			27882	5887	18831	18903	28255	28255					0.09543545936958253
NDIVVKVL	8	Unmodified	_NDIVVKVL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2816162109375	2	450.28166	898.548768	0.68038	0.00030636	-1.0143	-0.00045674	-0.33396	-0.00015038	450.2811500487435	39.431	0.27162	39.431	39.306	39.577	0					22	9	3	0	0	0	0.25143	1	15489	15489		98.629	19.178	1	574500			27883	5887	18831	18903	28256	28256					0.09543545936958253
NDIVVKVL	8	Unmodified	_NDIVVKVL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2818298339844	2	450.28166	898.548768	-0.19824	-8.9262E-05	-0.20545	-9.2508E-05	-0.40368	-0.00018177	450.2816415534408	39.19	0.1488	39.19	39.116	39.264	0					12	7	2	0	0	0	0.26795	1	13976	13976		93.143	31.036	1	54435			27884	5887	18831	18903	28257	28257					0.09543545936958253
NDIVVKVL	8	Unmodified	_NDIVVKVL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.28125	2	450.28166	898.548768	0.87573	0.00039433	-2.0224	-0.00091063	-1.1466	-0.0005163	450.2809472897241	39.368	0.63974	39.368	39.157	39.796	0					23	14	2	0	0	0	0.241	1	15550	15550		115.49	30.333	1	521230			27885	5887	18831	18903	28258	28258					0.09543545936958253
NDKNNGLS	8	Unmodified	_NDKNNGLS_					0	0	0			REV__ENSG00000083444|ENST00000196061|PLOD1	REV__ENSG00000083444|ENST00000196061|PLOD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.20562744140625	2	431.206681	860.398809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.263	1	24.263	23.763	24.763	0								0	0	0	1.7419	1	7136	7136		29.15	0.89528	1		+		27886	13331	18832	18904	28259	28259					-0.036974260728015906
NDMHLRDE	8	Unmodified	_NDMHLRDE_					0	0	0			REV__nc|ENSG00000159267|P50747|HLCS	REV__nc|ENSG00000159267|P50747|HLCS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2265625	2	515.224548	1028.43454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.628	1	40.628	40.128	41.128	0								0	0	0	1.7419	1	15491	15491		35.618	7.736	1		+		27887	15708	18833	18905	28260	28260					-0.0785371188744648
NDMVYKAL	8	Unmodified	_NDMVYKAL_					0	0	0			REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2413330078125	2	477.241678	952.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.4	1	28.4	27.9	28.9	0								0	0	0	1.7419	1	8869	8869		55.504	2.1528	1		+		27888	21961	18834	18906	28261	28261					-0.009332637285638157
NDNIDQVKVI	10	Unmodified	_NDNIDQVKVI_					0	0	0			REV__CDH11|p.R526Sfs*48|1|0.09|ENSG00000140937|chr16:64971643-64971644|-/GG|frameshift_variant	REV__CDH11|p.R526Sfs*48|1|0.09|ENSG00000140937|chr16:64971643-64971644|-/GG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.3134155273438	2	579.311677	1156.6088	-1.6779	-0.00097204	3.9755	0.0023031	2.2976	0.001331	579.3143624270139	26.633	0.14708	26.633	26.539	26.687	0					6	3	2	0	0	0	0.41384	1	8614	8614		54.722	1.7857	1	110380	+		27889	12393	18835	18907	28262	28262					0.03676191809518059
NDNIYKEY	8	Unmodified	_NDNIYKEY_					0	0	0			REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7451782226562	2	529.743096	1057.47164	2.3364	0.0012377	1.2084	0.00064012	3.5447	0.0018778	529.7438295407945	25.249	0.27776	25.249	25.148	25.426	0					17	6	4	0	0	0	0.49216	1	8590	8590		60.972	4.2509	1	1819900	+		27890	22096	18836	18908	28263	28263					-0.05479717070033985
NDPAPSFFM	9	Unmodified	_NDPAPSFFM_					0	0	0			REV__nc|ENSG00000132394|P57772-2|EEFSEC	REV__nc|ENSG00000132394|P57772-2|EEFSEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2227783203125	2	513.223485	1024.43242	-0.022923	-1.1764E-05	-0.93734	-0.00048107	-0.96027	-0.00049283	513.2230273654933	32.883	0.18021	32.883	32.827	33.007	0					12	7	2	0	0	0	0.61124	1	10663	10663		17.365	0.64758	1	166110	+		27891	14652	18837	18909	28264	28264					-0.0788214062527004
NDQFKGKVL	9	Unmodified	_NDQFKGKVL_					0	0	0			REV__nc|ENSG00000084764|Q9UPY8-2|MAPRE3	REV__nc|ENSG00000084764|Q9UPY8-2|MAPRE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.793212890625	2	524.792924	1047.57129	0.4234	0.0002222	-0.011641	-6.1092E-06	0.41176	0.00021609	524.7931282570181	35.502	0.23129	35.502	35.409	35.64	0					22	11	3	0	0	0	0.13519	1	12004	12004		71.296	2.811	1	120950	+		27892	13353	18838	18910	28265	28265					0.049411453345555856
NDTFVHVT	8	Unmodified	_NDTFVHVT_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.726806640625	2	466.727249	931.439946	-0.13368	-6.2392E-05	-0.78197	-0.00036497	-0.91566	-0.00042736	466.727011148175	29.97	0.20733	29.97	29.818	30.025	0					7	4	2	0	0	0	0.23898	1	11146	11146		116.9	55.932	1	94078			27893	5707	18839	18911	28266	28266					-0.028516650333358484
NDTFVHVT	8	Unmodified	_NDTFVHVT_					0	0	0		ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENSG00000164587|ENST00000407193|RPS14	ENSG00000164587|ENST00000407193|RPS14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7272033691406	2	466.727249	931.439946	-0.50166	-0.00023414	0.55075	0.00025705	0.049087	2.291E-05	466.7275754114525	29.939	0.21626	29.939	29.798	30.014	0					7	4	2	0	0	0	0.3049	1	11021	11021		82.241	30.905	1	135440			27894	5707	18839	18911	28267	28267					-0.028516650333358484
NDTNLIPTI	9	Unmodified	_NDTNLIPTI_					0	0	0		FUT9|p.K229T|1|0.3|ENSG00000172461|chr6:96203841-96203841|A/C|missense_variant	FUT9|p.K229T|1|0.3|ENSG00000172461|chr6:96203841-96203841|A/C|missense_variant	FUT9|p.K229T|1|0.3|ENSG00000172461|chr6:96203841-96203841|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.76885986328125	2	500.769114	999.523675	1.1021	0.00055192	-1.0886	-0.00054514	0.013531	6.776E-06	500.76840159752663	35.221	0.57027	35.221	35.015	35.586	0					20	11	2	0	0	0	0.095583	1	13564	13564		80.455	0.74203	1	2942100			27895	11150	18840	18912	28268	28268					0.023894463437159175
NDTQIKLFI	9	Unmodified	_NDTQIKLFI_					0	0	0		CDC45|p.L118F|1|0.33|ENSG00000093009|chr22:19483871-19483871|C/T|missense_variant	CDC45|p.L118F|1|0.33|ENSG00000093009|chr22:19483871-19483871|C/T|missense_variant	CDC45|p.L118F|1|0.33|ENSG00000093009|chr22:19483871-19483871|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.8731994628906	3	364.541363	1090.60226	0.09472	3.4529E-05	-2.346	-0.00085523	-2.2513	-0.0008207	364.5413235185873	24.898	0.75396	24.898	24.269	25.023	0					50	22	4	0	0	0	0.5654	1	7448	7448		32.812	8.2932	1	267550			27896	439	18841	18913	28269	28269					0.060582986487816015
NDWEAKGI	8	Unmodified	_NDWEAKGI_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7286071777344	2	466.727249	931.439946	2.6396	0.001232	0.087793	4.0975E-05	2.7274	0.001273	466.7274709006073	42.208	0.32041	42.208	42.122	42.443	0					18	8	4	0	0	0	0.54629	1	16820	16820		55.504	4.1688	1	576460			27897	5512	18842	18914	28270	28270					-0.028516650333358484
NDWSYTKIQ	9	Unmodified	_NDWSYTKIQ_					0	0	0			REV__ENSG00000169213|ENST00000371655|RAB3B	REV__ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.7796630859375	2	577.77747	1153.54039	3.2697	0.0018892	-0.30553	-0.00017653	2.9642	0.0017127	577.77753339713	35.037	0.26521	35.037	34.897	35.162	0					14	5	4	0	0	0	0.27249	1	13487	13487		52.937	0	1	604360	+		27898	16300	18843	18915	28271	28271					-0.03024052770342678
NDWVGPPNDN	10	Unmodified	_NDWVGPPNDN_					0	0	0		ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B	ENSG00000237763|ENST00000370083|AMY1A	ENSG00000237763|ENST00000370083|AMY1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.2396240234375	2	564.241252	1126.46795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.718	1	11.718	11.218	12.218	0								0	0	0	0.4201	1	2281	2281		9.1829	1.4926	1				27899	6518	18844	18916	28272	28272					-0.09022386843889763
NDYKIALL	8	Unmodified	_NDYKIALL_					0	0	0		nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant;MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-2|MED23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.27069091796875	2	475.271293	948.528032	0.73365	0.00034868	-1.0785	-0.00051259	-0.34487	-0.00016391	475.2708192355804	44.413	0.18731	44.413	44.351	44.538	0					12	7	2	0	0	0	0.57171	1	17796	17796		52.937	3.4952	1	83982			27900	2729	18845	18917	28273	28273					0.05170955557275647
NEAATVKYN	9	Unmodified	_NEAATVKYN_					0	0	0			REV__STAT1|p.M654T|1|0.13|ENSG00000115415|chr2:190976938-190976938|A/G|missense_variant	REV__STAT1|p.M654T|1|0.13|ENSG00000115415|chr2:190976938-190976938|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.25054931640625	2	505.251089	1008.48762	-0.77686	-0.00039251	-0.44154	-0.00022309	-1.2184	-0.0006156	505.25076608687647	34.248	0.15637	34.248	34.162	34.318	0					11	7	2	0	0	0	0.44593	1	11544	11544		37.812	4.9991	1	60807	+		27901	21611	18846	18918	28274	28274					-0.016280108331443444
NEADVDMDAN	10	Unmodified	_NEADVDMDAN_					0	0	0			REV__nc|ENSG00000153130|Q9UIL1-3|SCOC	REV__nc|ENSG00000153130|Q9UIL1-3|SCOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.210205078125	2	547.20876	1092.40297	0.33897	0.00018549	2.5094	0.0013732	2.8483	0.0015586	547.2101510855304	15.76	0.31005	15.76	15.702	16.013	0					13	6	3	0	0	0	0.50287	1	4407	4407		45.022	10.85	1	703850	+		27902	21068	18847	18919	28275	28275					-0.13953749432062068
NEAHSRTIS	9	Unmodified	_NEAHSRTIS_					0	0	0			REV__nc|ENSG00000166349|P15918-2|RAG1	REV__nc|ENSG00000166349|P15918-2|RAG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2677001953125	2	507.751787	1013.48902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.558	1	20.558	20.058	21.058	0								0	0	0	0.19749	1	5803	5803		51.335	1.8939	1		+		27903	16112	18848	18920	28276	28276					-0.017183767443725628
NEAKLEDLFAK	11	Unmodified	_NEAKLEDLFAK_					0	0	0			REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	639.34228515625	2	639.340435	1276.66632	2.9919	0.0019129	0.0058061	3.7121E-06	2.9977	0.0019166	639.3403628465422	36.656	0.21591	36.656	36.545	36.761	0					10	4	3	0	0	0	0.29287	1	14277	14277		63.426	12.234	1	314850	+		27904	20032	18849	18921	28277	28277					0.03905034015087949
NEAKLVAL	8	Unmodified	_NEAKLVAL_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2583923339844	2	429.258185	856.501818	0.24345	0.0001045	-0.27263	-0.00011703	-0.029178	-1.2525E-05	429.25836550233356	33.915	0.13065	33.915	33.817	33.947	0					6	3	2	0	0	0	0.23519	1	12572	12572		119.56	13.142	1	50755			27905	5776	18850	18922	28278	28278					0.0678268638581585
NEAKQMIAV	9	Unmodified	_NEAKQMIAV_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.265625	2	502.265684	1002.51682	-2.0801	-0.0010447	1.904	0.00095632	-0.17604	-8.8419E-05	502.2667272844134	29.953	0.20423	29.953	29.858	30.062	0					10	5	2	0	0	0	0.063823	1	10130	10130		90.37	2.6734	1	376290			27906	1608	18851	18923	28279	28279					0.015658101914937106
NEALSLIAL	9	Unmodified	_NEALSLIAL_					0	0	0			REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2761535644531	2	472.276575	942.538597	-0.36924	-0.00017438	-0.41182	-0.00019449	-0.78106	-0.00036888	472.27624395257624	36.403	0.20973	36.403	36.319	36.529	0					16	10	2	0	0	0	0.36892	1	11934	11934		44.377	1.981	1	194770	+		27907	12436	18852	18924	28280	28280					0.06502938211713172
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.7593688964844	2	498.759081	995.503609	0.2551	0.00012723	0.00086641	4.3213E-07	0.25596	0.00012766	498.7590968576059	35.067	0.28062	35.067	34.969	35.25	0					20	12	2	0	0	0	0.026538	1	11479	11479		112.41	40.533	1	552360			27908	2007;2348;3852;3829;1609	18853	18925	28281	28281					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.7589111328125	2	498.759081	995.503609	0.68333	0.00034081	-0.8612	-0.00042953	-0.17787	-8.8715E-05	498.75854915665724	35.347	0.49375	35.347	35.228	35.722	0					34	13	4	0	0	0	0.0076184	1	13240	13240		146.79	59.089	1	3789400			27909	2007;2348;3852;3829;1609	18853	18925	28282	28282					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.758544921875	2	498.759081	995.503609	-1.0817	-0.00053949	0.73545	0.00036681	-0.34622	-0.00017268	498.75941755165275	35.125	0.30386	35.125	35.012	35.316	0					29	13	3	0	0	0	0.012231	1	11866	11866		136.27	64.391	1	780220			27910	2007;2348;3852;3829;1609	18853	18925	28283	28283					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7586669921875	2	498.759081	995.503609	0.84164	0.00041978	-1.1218	-0.00055953	-0.28021	-0.00013976	498.75838833780216	35.347	0.54802	35.347	35.136	35.684	0					39	15	4	0	0	0	0.0059092	1	13685	13685		154.12	55.489	1	4513600			27911	2007;2348;3852;3829;1609	18853	18925	28284	28284					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.75982666015625	2	498.759081	995.503609	-0.28509	-0.00014219	1.2797	0.00063827	0.99464	0.00049608	498.75984432273486	35.107	0.27763	35.107	34.997	35.275	0					16	8	3	0	0	0	0.022525	1	12469	12469		117.81	41.037	1	213580			27912	2007;2348;3852;3829;1609	18853	18925	28285	28285					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7586669921875	2	498.759081	995.503609	0.17032	8.4948E-05	-0.42966	-0.0002143	-0.25934	-0.00012935	498.7588308657454	35.118	0.2858	35.118	35.025	35.31	0					23	9	4	0	0	0	0.0097668	1	12478	12478		141.52	53.824	1	946310			27913	2007;2348;3852;3829;1609	18853	18925	28286	28286					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7587585449219	2	498.759081	995.503609	-2.1975	-0.001096	1.5317	0.00076396	-0.66576	-0.00033205	498.75985666186614	35.116	0.2355	35.116	35.014	35.249	0					16	7	3	0	0	0	0.012936	1	12487	12487		134.77	52.015	1	286680			27914	2007;2348;3852;3829;1609	18853	18925	28287	28287					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7589111328125	2	498.759081	995.503609	-0.73604	-0.00036711	0.42189	0.00021042	-0.31415	-0.00015669	498.7592308245068	35.288	0.52475	35.288	35.129	35.654	0					26	10	4	0	0	0	0.00324	1	13595	13595		167.23	57.109	1	3328400			27915	2007;2348;3852;3829;1609	18853	18925	28288	28288					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH9|p.C91Y|1|0.25|ENSG00000100345|chr22:36348965-36348965|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7589416503906	2	498.759081	995.503609	1.0447	0.00052106	-1.0939	-0.00054558	-0.049165	-2.4521E-05	498.75835462821146	35.271	0.57174	35.271	35.065	35.637	0					33	11	4	0	0	0	0.0023831	1	13587	13587		172.25	56.755	1	7178400			27916	2007;2348;3852;3829;1609	18853	18925	28289	28289					0.005676954037653559
NECGKAFSL	9	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))GKAFSL_	NEC(1)GKAFSL		NEC(86)GKAFSL		0	1	0		nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;nc|ENSG00000197062|Q16670-2|ZSCAN26;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	nc|ENSG00000197062|Q16670|ZSCAN26	nc|ENSG00000197062|Q16670|ZSCAN26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2396850585938	2	513.239667	1024.46478	1.2313	0.00063196	-0.80986	-0.00041565	0.42146	0.00021631	513.2393715741838	32.776	0.14522	32.776	32.699	32.844	0					9	5	2	0	0	0	0.076532	1	10613	10613		85.862	27.632	1	118730			27917	7421	18854	18926	28290	28290	314				-0.04647353222264883
NECGKAFSL	9	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))GKAFSL_	NEC(1)GKAFSL		NEC(69)GKAFSL		0	1	0		nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;nc|ENSG00000197062|Q16670-2|ZSCAN26;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	nc|ENSG00000197062|Q16670|ZSCAN26	nc|ENSG00000197062|Q16670|ZSCAN26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2393188476562	2	513.239667	1024.46478	1.0965	0.00056279	-0.96498	-0.00049526	0.13157	6.7527E-05	513.2391240555701	33.037	0.2877	33.037	32.943	33.231	0					12	8	2	0	0	0	0.14673	1	12172	12172		68.626	20.968	1	274670			27918	7421	18854	18926	28291	28291	314				-0.04647353222264883
NECGKAFSL	9	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))GKAFSL_	NEC(1)GKAFSL		NEC(53)GKAFSL		0	1	0		nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;nc|ENSG00000197062|Q16670-2|ZSCAN26;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	nc|ENSG00000197062|Q16670|ZSCAN26	nc|ENSG00000197062|Q16670|ZSCAN26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2399291992188	2	513.239667	1024.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.827	1	32.827	32.327	33.327	0								0	0	0	0.18541	1	10980	10980		53.089	12.311	1				27919	7421	18854	18926	28292	28292	314				-0.04647353222264883
NECGKAFSL	9	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))GKAFSL_	NEC(1)GKAFSL		NEC(82)GKAFSL		0	1	0		nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;nc|ENSG00000197062|Q16670-2|ZSCAN26;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	nc|ENSG00000197062|Q16670|ZSCAN26	nc|ENSG00000197062|Q16670|ZSCAN26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2396240234375	2	513.239667	1024.46478	0.59187	0.00030377	-0.79507	-0.00040806	-0.2032	-0.00010429	513.2393606902609	33.032	0.31486	33.032	32.932	33.246	0					12	7	3	0	0	0	0.090954	1	12596	12596		81.525	35.553	1	315620			27920	7421	18854	18926	28293	28293	314				-0.04647353222264883
NECGKAFSL	9	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))GKAFSL_	NEC(1)GKAFSL		NEC(60)GKAFSL		0	1	0		nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;nc|ENSG00000197062|Q16670-2|ZSCAN26;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	nc|ENSG00000197062|Q16670|ZSCAN26	nc|ENSG00000197062|Q16670|ZSCAN26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.239501953125	2	513.239667	1024.46478	0.96237	0.00049393	-0.60678	-0.00031142	0.35559	0.0001825	513.2393140839603	32.811	0.1776	32.811	32.738	32.916	0					6	4	2	0	0	0	0.21419	1	11447	11447		59.931	17.535	1	72921			27921	7421	18854	18926	28294	28294	314				-0.04647353222264883
NECGKAFSL	9	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))GKAFSL_	NEC(1)GKAFSL		NEC(94)GKAFSL		0	1	0		nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;nc|ENSG00000197062|Q16670-2|ZSCAN26;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	nc|ENSG00000197062|Q16670|ZSCAN26	nc|ENSG00000197062|Q16670|ZSCAN26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2393188476562	2	513.239667	1024.46478	0.08568	4.3974E-05	-0.44295	-0.00022734	-0.35727	-0.00018336	513.2396515006594	33.019	0.34002	33.019	32.875	33.215	0					15	7	3	0	0	0	0.054723	1	12498	12498		93.598	34.816	1	540530			27922	7421	18854	18926	28295	28295	314				-0.04647353222264883
NECGKVFIL	9	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))GKVFIL_	NEC(1)GKVFIL		NEC(64)GKVFIL		0	1	0		ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.28271484375	2	540.281334	1078.54812	0.66863	0.00036125	2.8188	0.0015229	3.4874	0.0018842	540.2824915023234	42.179	0.14046	42.179	42.106	42.246	0					5	3	2	0	0	0	0.18416	1	16833	16833		63.534	24.281	1	71525			27923	7138	18855	18927	28296	28296	301				0.011983832255964444
NEDGSRTAL	9	Unmodified	_NEDGSRTAL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7303771972656	2	481.73052	961.446488	0.54668	0.00026335	-0.79368	-0.00038234	-0.247	-0.00011899	481.7301708057633	20.25	0.20312	20.25	20.153	20.356	0					10	4	3	0	0	0	0.037712	1	6264	6264		101.46	28.581	1	514490			27924	1424	18856	18928	28297	28297					-0.03577771872619451
NEDGSRTAL	9	Unmodified	_NEDGSRTAL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.73046875	2	481.73052	961.446488	-0.10533	-5.0739E-05	-0.18081	-8.7103E-05	-0.28614	-0.00013784	481.7305670781497	20.137	0.21796	20.137	20.028	20.246	0					6	4	2	0	0	0	0.14578	1	6491	6491		68.846	10.616	1	250760			27925	1424	18856	18928	28298	28298					-0.03577771872619451
NEDPNARLI	9	Unmodified	_NEDPNARLI_					0	0	0		KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant;KIF1C|p.K1057Sfs*31|1|0.14|ENSG00000129250|chr17:5024005-5024005|A/-|frameshift_variant;KIF1C|p.Y1081Ifs*15|1|0.28|ENSG00000129250|chr17:5024072-5024073|-/C|frameshift_variant;ENSG00000129250|ENST00000320785|KIF1C	KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2717895507812	2	521.269813	1040.52507	3.3865	0.0017653	1.2508	0.00065199	4.6373	0.0024173	521.2700232883207	38.535	0.59123	38.535	38.186	38.778	0					35	12	4	0	0	0	0.22837	1	15166	15166		58.23	0	1	268450			27926	3589	18857	18929	28299	28299					0.006430804324736528
NEEGIIDIV	9	Unmodified	_NEEGIIDIV_					0	0	0			REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2613220214844	2	501.261122	1000.50769	-0.40512	-0.00020307	1.6751	0.00083967	1.27	0.0006366	501.2617332858879	25.202	0.22851	25.202	25.098	25.327	0					7	5	2	0	0	0	0.27249	1	7981	7981		52.937	12.159	1	91508	+		27927	22217	18858	18930	28300	28300					0.00745740106822268
NEEINLKEI	9	Unmodified	_NEEINLKEI_					0	0	0		tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.293701171875	2	551.292953	1100.57135	0.57647	0.0003178	0.33088	0.00018241	0.90735	0.00050022	551.2935699687604	35.528	0.19431	35.528	35.445	35.64	0					7	5	2	0	0	0	0.063171	1	13338	13338		90.601	10.146	1	97407			27928	22575	18859	18931	28301	28301					0.025091005438980574
NEELFYSV	8	Unmodified	_NEELFYSV_					0	0	0			REV__tr|U7SJ70|U7SJ70_FUSNUPara-aminobenzoatesynthetasecomponentIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02129PE=4SV=1	REV__tr|U7SJ70|U7SJ70_FUSNUPara-aminobenzoatesynthetasecomponentIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02129PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.73553466796875	2	500.73474	999.454927	-0.046842	-2.3455E-05	1.9622	0.00098255	1.9154	0.0009591	500.73577894950307	11.635	0.077709	11.635	11.588	11.665	0					6	3	2	0	0	0	0.78142	1	2190	2190		23.042	4.7181	1	272330	+		27929	21728	18860	18932	28302	28302					-0.04482217955990109
NEELYKDF	8	Unmodified	_NEELYKDF_					0	0	0			REV__tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	REV__tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2459716796875	2	529.245472	1056.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.706	1	11.706	11.206	12.206	0								0	0	0	1.7419	1	2464	2464		16.473	0.83134	1		+		27930	21836	18861	18933	28303	28303					-0.04958832927286494
NEEVQIAL	8	Unmodified	_NEEVQIAL_					0	0	0			REV__ENSG00000244607|ENST00000310232|CCDC13	REV__ENSG00000244607|ENST00000310232|CCDC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2427673339844	2	458.242732	914.470912	0.78678	0.00036053	-0.48186	-0.00022081	0.30492	0.00013973	458.242498644745	33.7	0.21372	33.7	33.538	33.752	0					13	5	3	0	0	0	0.43813	1	12479	12479		66.429	5.4573	1	198070	+		27931	12353	18862	18934	28304	28304					0.010254882808908405
NEFDAIQKA	9	Unmodified	_NEFDAIQKA_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2593383789062	2	518.258914	1034.50327	1.3456	0.00069739	2.1757	0.0011276	3.5213	0.001825	518.2589724983063	32.611	0.25601	32.611	32.503	32.759	0					12	6	3	0	0	0	0.10506	1	11987	11987		78.264	10.77	1	156900			27932	3998	18863	18935	28305	28305					-0.012597243161053484
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2724609375	2	540.272021	1078.52949	0.27165	0.00014677	-0.4555	-0.00024609	-0.18385	-9.9327E-05	540.2722738475725	31.327	0.41525	31.327	31.197	31.613	0					27	10	4	0	0	0	0.0093724	1	11397	11397		142.36	32.241	1	1857700			27933	5752	18864	18936	28306	28306					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.2728271484375	2	540.272021	1078.52949	-0.010415	-5.6271E-06	0.33561	0.00018132	0.32519	0.00017569	540.2726486870337	31.151	0.22009	31.151	31.034	31.254	0					19	8	4	0	0	0	0.019258	1	10277	10277		123.21	32.838	1	430510			27934	5752	18864	18936	28307	28307					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2723999023438	2	540.272021	1078.52949	1.9814	0.0010705	-3.1304	-0.0016913	-1.149	-0.00062075	540.2713580130828	31.341	0.49419	31.341	31.174	31.668	0					29	11	4	0	0	0	0.0014418	1	11818	11818		178.55	56.372	1	2155600			27935	5752	18864	18936	28308	28308					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.2725219726562	2	540.272021	1078.52949	1.0293	0.0005561	0.078707	4.2523E-05	1.108	0.00059863	540.2719244276833	31.12	0.17744	31.12	31.032	31.21	0					9	5	2	0	0	0	0.090954	1	10669	10669		81.525	26.749	1	124230			27936	5752	18864	18936	28309	28309					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.2725830078125	2	540.272021	1078.52949	-1.4805	-0.00079988	1.3311	0.00071914	-0.14944	-8.074E-05	540.2730091127918	31.102	0.24586	31.102	31.02	31.266	0					20	7	4	0	0	0	0.047855	1	10659	10659		96.034	8.3372	1	368920			27937	5752	18864	18936	28310	28310					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2719116210938	2	540.272021	1078.52949	2.0945	0.0011316	-1.3242	-0.00071541	0.77033	0.00041619	540.2712617737208	31.311	0.36343	31.311	31.207	31.571	0					15	7	3	0	0	0	0.0071744	1	11685	11685		148.69	26.514	1	1212900			27938	5752	18864	18936	28311	28311					-0.006634551446268233
NEFNNKDLI	9	Unmodified	_NEFNNKDLI_					0	0	0			REV__tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	REV__tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7770385742188	2	553.77747	1105.54039	1.6327	0.00090417	-2.2072	-0.0012223	-0.57446	-0.00031812	553.7767355784245	36.953	0.20288	36.953	36.862	37.065	0					16	6	5	0	0	0	0.10915	1	14427	14427		77.318	10.888	1	125660	+		27939	21723	18865	18937	28312	28312					-0.008160527703466869
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.796630859375	2	543.795132	1085.57571	0.35026	0.00019047	0.64378	0.00035008	0.99404	0.00054056	544.2972886112371	44.903	0.22017	44.903	44.835	45.056	0					17	13	2	0	0	0	0.48623	1	16767	16767		33.922	2.3918	1	98983			27940	1548	18866	18938	28313	28313					0.036346097574551095
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2974853515625	2	543.795132	1085.57571	1.9937	0.0010842	0.12768	6.9434E-05	2.1214	0.0011536	543.7948490137181	44.895	0.39392	44.895	44.797	45.191	0					35	22	3	0	0	0	0.30841	1	17413	17413		49.536	1.8787	1	116280			27941	1548	18866	18938	28314	28314					0.036346097574551095
NEFQSQQNI	9	Unmodified	_NEFQSQQNI_					0	0	0		ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.K292Dfs*14|1|0.07|ENSG00000075292|chr2:71349827-71349828|CA/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.04|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.257080078125	2	554.256902	1106.49925	1.6346	0.00090599	-1.0173	-0.00056383	0.61733	0.00034216	554.2566833473439	32.154	0.34011	32.154	32.032	32.372	0					12	7	3	0	0	0	0.010427	1	12199	12199		140.11	40.737	1	280110			27942	1537	18867	18939	28315	28315					-0.049738138098064155
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.72137451171875	2	489.72111	977.427666	-0.10981	-5.3776E-05	-0.19506	-9.5524E-05	-0.30487	-0.0001493	489.72096133144277	32.491	0.14152	32.491	32.422	32.563	0					12	6	2	0	0	0	0.58597	1	10501	10501		51.335	1.8939	1	139760			27943	5965	18868	18940	28316	28316					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7208557128906	2	489.72111	977.427666	0.79649	0.00039006	-1.2942	-0.00063381	-0.49773	-0.00024375	489.7205314722154	32.723	0.29068	32.723	32.625	32.915	0					21	7	3	0	0	0	0.24425	1	12046	12046		111.65	52.866	1	849890			27944	5965	18868	18940	28317	28317					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7217712402344	2	489.72111	977.427666	-1.2545	-0.00061434	0.20465	0.00010022	-1.0498	-0.00051411	489.7216033235286	32.523	0.20028	32.523	32.438	32.639	0					16	8	3	0	0	0	0.65148	1	10848	10848		40.778	0	1	176810			27945	5965	18868	18940	28318	28318					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7208557128906	2	489.72111	977.427666	-0.072423	-3.5467E-05	0.25361	0.0001242	0.18119	8.8733E-05	489.7210199114648	32.756	0.17166	32.756	32.61	32.782	0					6	4	2	0	0	0	0.3961	1	12479	12479		71.296	13.484	1	48268			27946	5965	18868	18940	28319	28319					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.720947265625	2	489.72111	977.427666	0.60223	0.00029493	-1.9161	-0.00093835	-1.3139	-0.00064343	489.72057188464674	32.727	0.33521	32.727	32.596	32.932	0					26	8	4	0	0	0	0.24915	1	12453	12453		102.77	42.479	1	774110			27947	5965	18868	18940	28320	28320					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7209777832031	2	489.72111	977.427666	-0.52756	-0.00025836	0.11476	5.6201E-05	-0.4128	-0.00020215	489.7211802681417	32.687	0.31858	32.687	32.573	32.892	0					15	6	4	0	0	0	0.3961	1	12353	12353		71.296	10.324	1	766430			27948	5965	18868	18940	28321	28321					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7209167480469	2	489.72111	977.427666	0.77255	0.00037833	-1.9777	-0.00096852	-1.2052	-0.00059019	489.7205578909785	32.683	0.369	32.683	32.506	32.875	0					21	7	4	0	0	0	0.24915	1	12348	12348		102.77	39.795	1	943670			27949	5965	18868	18940	28322	28322					-0.0619502476802154
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.2803344726562	2	550.28018	1098.54581	1.2778	0.00070313	-1.5681	-0.00086291	-0.29037	-0.00015978	550.2794167774133	40.038	0.11375	40.038	39.959	40.073	0					10	6	2	0	0	0	0.30841	1	12966	12966		49.536	10.283	1	57954			27950	3114	18869	18941	28323	28323					0.0004767081213685742
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2803344726562	2	550.28018	1098.54581	0.54775	0.00030142	0.17824	9.8081E-05	0.72599	0.0003995	550.2801334073416	40.36	0.23967	40.36	40.238	40.477	0					24	10	4	0	0	0	0.047855	1	15374	15374		96.034	24.156	1	454870			27951	3114	18869	18941	28324	28324					0.0004767081213685742
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2805786132812	2	550.28018	1098.54581	1.6913	0.00093068	-1.1065	-0.00060887	0.5848	0.0003218	550.2795708593678	40.304	0.33305	40.304	40.168	40.501	0					27	13	3	0	0	0	0.18416	1	15871	15871		63.534	7.1001	1	458780			27952	3114	18869	18941	28325	28325					0.0004767081213685742
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2802734375	2	550.28018	1098.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.3	1	40.3	39.8	40.8	0								0	0	0	0.15687	1	15878	15878		58.23	4.8785	1				27953	3114	18869	18941	28326	28326					0.0004767081213685742
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2816162109375	2	550.28018	1098.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.126	1	40.126	39.626	40.626	0								0	0	0	0.14211	1	14268	14268		61.691	12.155	1				27954	3114	18869	18941	28327	28327					0.0004767081213685742
NEGAAALCLY	10	Carbamidomethyl (C)	_NEGAAALC(Carbamidomethyl (C))LY_	NEGAAALC(1)LY		NEGAAALC(66)LY		0	1	0			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2538452148438	2	541.252774	1080.491	1.8942	0.0010253	0.019259	1.0424E-05	1.9135	0.0010357	541.2527231381799	34.412	0.32675	34.412	34.257	34.583	0					20	8	3	0	0	0	0.31306	1	12833	12833		65.803	9.3694	1	211940	+		27955	14832	18870	18942	28328	28328	546				-0.04603084050813777
NEGEAPVNNI	10	Unmodified	_NEGEAPVNNI_					0	0	0			REV__ENST00000517801.5_1_8:130863079-130874553:-|nuORF	REV__ENST00000517801.5_1_8:130863079-130874553:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7551879882812	2	528.751453	1055.48835	3.4606	0.0018298	3.2065	0.0016955	6.6671	0.0035253	528.7533438473479	43.573	0.43967	43.573	43.463	43.902	0					19	13	2	0	0	0	0.31613	1	17433	17433		65.465	4.4934	1	148590	+		27956	15540	18871	18943	28329	28329					-0.03717216184099925
NEGKHLYTL	9	Unmodified	_NEGKHLYTL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.78369140625	2	537.782556	1073.55056	0.2247	0.00012084	-0.58356	-0.00031383	-0.35887	-0.00019299	537.7835385621202	26.49	0.5256	26.49	26.235	26.76	0					27	12	4	0	0	0	0.35021	1	9153	9153		45.972	0	1	751940			27957	7716	18872	18944	28330	28330					0.016725549548937124
NEGKHLYTL	9	Unmodified	_NEGKHLYTL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.782958984375	2	537.782556	1073.55056	0.29557	0.00015895	1.0457	0.00056238	1.3413	0.00072133	537.7832552511057	26.501	0.21737	26.501	26.343	26.56	0					8	4	2	0	0	0	0.063171	1	9504	9504		90.601	29.629	1	271230			27958	7716	18872	18944	28331	28331					0.016725549548937124
NEGKQLPE	8	Unmodified	_NEGKQLPE_					0	0	0			REV__nc|ENSG00000085982|Q9NVE5|USP40	REV__nc|ENSG00000085982|Q9NVE5|USP40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7322082519531	2	457.732532	913.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.033	1	22.033	21.533	22.533	0								0	0	0	1.7419	1	7094	7094		67.494	0	1		+		27959	13362	18873	18945	28332	28332					-0.009676823789050104
NEGQPPKVF	9	Unmodified	_NEGQPPKVF_					0	0	0			REV__ENST00000439119.5_1_22:21389692-21399270:-|nuORF	REV__ENST00000439119.5_1_22:21389692-21399270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.26702880859375	2	508.263999	1014.51345	1.1375	0.00057815	3.5332	0.0017958	4.6707	0.0023739	508.2656349410143	42.191	0.21489	42.191	42.074	42.289	0					17	10	2	0	0	0	0.3269	1	16545	16545		58.782	23.581	1	77048	+		27960	13505	18874	18946	28333	28333					0.006768834091417375
NEGVTLVFY	9	Unmodified	_NEGVTLVFY_					0	0	0			REV__nc|ENSG00000009335|Q15386-3|UBE3C	REV__nc|ENSG00000009335|Q15386-3|UBE3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.26708984375	2	521.266207	1040.51786	1.7287	0.0009011	0.41394	0.00021577	2.1426	0.0011169	521.2662072573174	37.803	0.47346	37.803	37.49	37.964	0					26	15	2	0	0	0	0.26904	1	14768	14768		53.351	9.2347	1	266220	+		27961	12883	18875	18947	28334	28334					-0.0007765216791995044
NEHHVNATL	9	Unmodified	_NEHHVNATL_					0	0	0		ENST00000550898.1_1_12:75900510-75905383:-|nuORF;ENST00000550023.5_1_12:75900251-75905383:-|nuORF;KRR1|p.T261Nfs*3|1|0.24|ENSG00000111615|chr12:75503953-75503954|-/T|frameshift_variant;nc|ENSG00000111615|Q13601-2|KRR1;ENSG00000111615|ENST00000229214|KRR1	ENST00000550898.1_1_12:75900510-75905383:-|nuORF	ENST00000550898.1_1_12:75900510-75905383:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7552490234375	2	517.75433	1033.49411	0.059457	3.0784E-05	0.67555	0.00034977	0.73501	0.00038055	517.7547267237888	19.486	0.083965	19.486	19.444	19.528	0					4	2	2	0	0	0	0.55048	1	5293	5293		27.047	1.4733	1	129140			27962	2677	18876	18948	28335	28335					-0.021300728817550407
NEHHVNATL	9	Unmodified	_NEHHVNATL_					0	0	0		ENST00000550898.1_1_12:75900510-75905383:-|nuORF;ENST00000550023.5_1_12:75900251-75905383:-|nuORF;KRR1|p.T261Nfs*3|1|0.24|ENSG00000111615|chr12:75503953-75503954|-/T|frameshift_variant;nc|ENSG00000111615|Q13601-2|KRR1;ENSG00000111615|ENST00000229214|KRR1	ENST00000550898.1_1_12:75900510-75905383:-|nuORF	ENST00000550898.1_1_12:75900510-75905383:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7544555664062	2	517.75433	1033.49411	1.5622	0.00080886	-1.2632	-0.00065404	0.29902	0.00015482	517.7536885336636	19.682	0.21904	19.682	19.623	19.842	0					8	4	2	0	0	0	0.13726	1	6139	6139		70.816	1.1886	1	718690			27963	2677	18876	18948	28336	28336					-0.021300728817550407
NEHRGSQAV	9	Unmodified	_NEHRGSQAV_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2442321777344	2	499.244129	996.473705	0.67562	0.0003373	-0.86418	-0.00043143	-0.18855	-9.4133E-05	499.24375838975095	13.267	0.087458	13.267	13.227	13.314	0					6	2	3	0	0	0	0.12834	1	2994	2994		72.879	23.438	1	212280			27964	11803	18877	18949	28337	28337					-0.024672435415709515
NEHSVGIVI	9	Unmodified	_NEHSVGIVI_					0	0	0			REV__tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	REV__tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2641296386719	2	484.263999	966.513445	0.86302	0.00041793	-1.6964	-0.00082152	-0.83342	-0.0004036	484.2636207926189	37.404	0.31528	37.404	37.203	37.518	0					11	6	3	0	0	0	0.45358	1	14636	14636		37.159	0	1	184790	+		27965	21942	18878	18950	28338	28338					0.028848834091377284
NEIATYRNLL	10	Unmodified	_NEIATYRNLL_					0	0	0		ENSG00000108417|ENST00000225550|KRT37;ENSG00000171360|ENST00000246646|KRT38;CON__O76015	ENSG00000108417|ENST00000225550|KRT37	ENSG00000108417|ENST00000225550|KRT37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.88720703125	3	402.887422	1205.64044	0.55441	0.00022336	-0.68353	-0.00027539	-0.12912	-5.2021E-05	402.8870297502989	19.833	0.37067	19.833	19.723	20.094	0					21	7	4	0	0	0	0.50881	1	6211	6211		41.08	1.0219	1	1343500		+	27966	627	18879	18951	28339	28339					0.04584184563464078
NEIGELIKE	9	Unmodified	_NEIGELIKE_					0	0	0			REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.8576965332031	3	348.85724	1043.54989	0.49872	0.00017398	0.7807	0.00027235	1.2794	0.00044633	348.85751631390855	16.616	0.31223	16.616	16.35	16.662	0					19	7	3	0	0	0	0.28897	1	4530	4530		50.034	0	1	430170	+		27967	21874	18880	18952	28340	28340					0.029857155152058112
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.76123046875	2	487.761289	973.508025	-0.35994	-0.00017557	0.11033	5.3814E-05	-0.24961	-0.00012175	487.7612479112842	26.039	0.22178	26.039	25.903	26.125	0					12	5	3	0	0	0	0.07136	1	8920	8920		87.696	10.379	1	1801000			27968	6014	18881	18953	28341	28341					0.020211598266769215
NEIKTQVEL	9	Unmodified	_NEIKTQVEL_					0	0	0		ENST00000557802.5_1_14:24584825-24587275:+|nuORF;ENST00000396936.5_1_14:24584803-24587275:+|nuORF;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000557802.5_1_14:24584825-24587275:+|nuORF	ENST00000557802.5_1_14:24584825-24587275:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2955932617188	2	537.295496	1072.57644	0.69797	0.00037502	-0.36163	-0.0001943	0.33634	0.00018071	537.2953208746023	32.78	0.16422	32.78	32.676	32.84	0					5	3	2	0	0	0	0.037924	1	12402	12402		101.25	2.6232	1	173420			27969	2071	18882	18954	28342	28342					0.04305404406522939
NEILKLLWN	9	Unmodified	_NEILKLLWN_					0	0	0			REV__ENST00000262041.5_1_7:15650860-15651031:-|nuORF	REV__ENST00000262041.5_1_7:15650860-15651031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	381.555908203125	3	381.557125	1141.64954	0.28106	0.00010724	-2.9319	-0.0011187	-2.6508	-0.0010114	381.5557381599532	27.086	0.091904	27.086	27.026	27.118	0					4	2	2	0	0	0	0.48389	1	8818	8818		34.173	7.1252	1	31109	+		27970	18024	18883	18955	28343	28343					0.08438577919810086
NEIVKIQSL	9	Unmodified	_NEIVKIQSL_					0	0	0		IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.3087158203125	2	522.308406	1042.60226	1.6007	0.00083603	-1.5802	-0.00082534	0.020479	1.0696E-05	522.3077077230937	38.403	0.16993	38.403	38.333	38.503	0					9	5	2	0	0	0	0.076532	1	14614	14614		85.862	15.046	1	118950			27971	4684	18884	18956	28344	28344					0.08266298648823067
NEKEDIHSL	9	Unmodified	_NEKEDIHSL_					0	0	0		LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;nc|ENSG00000133739|Q9C099-2|LRRCC1;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1;ENST00000523669.5_1_8:86025320-86042154:+|nuORF;LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant;LRRCC1|p.M531Nfs*28|1|0.39|ENSG00000133739|chr8:85129338-85129339|-/A|frameshift_variant;LRRCC1|p.T599Yfs*2|1|0.16|ENSG00000133739|chr8:85131781-85131782|-/T|frameshift_variant;LRRCC1|p.T701Nfs*8|1|0.21|ENSG00000133739|chr8:85134973-85134974|-/A|frameshift_variant	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7684326171875	2	542.767103	1083.51965	1.844	0.0010009	0.77004	0.00041795	2.6141	0.0014188	542.767281512798	23.027	0.099503	23.027	22.98	23.08	0					4	2	2	0	0	0	0.028876	1	7575	7575		110.12	39.304	1	117190			27972	3868	18885	18957	28345	28345					-0.018766431499898317
NEKEDIHSL	9	Unmodified	_NEKEDIHSL_					0	0	0		LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;nc|ENSG00000133739|Q9C099-2|LRRCC1;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1;ENST00000523669.5_1_8:86025320-86042154:+|nuORF;LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant;LRRCC1|p.M531Nfs*28|1|0.39|ENSG00000133739|chr8:85129338-85129339|-/A|frameshift_variant;LRRCC1|p.T599Yfs*2|1|0.16|ENSG00000133739|chr8:85131781-85131782|-/T|frameshift_variant;LRRCC1|p.T701Nfs*8|1|0.21|ENSG00000133739|chr8:85134973-85134974|-/A|frameshift_variant	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7675170898438	2	542.767103	1083.51965	1.1893	0.00064553	-0.14314	-7.7689E-05	1.0462	0.00056784	542.7668309451598	22.954	0.16623	22.954	22.862	23.028	0					7	3	3	0	0	0	0.021961	1	7838	7838		118.74	53.278	1	143970			27973	3868	18885	18957	28346	28346					-0.018766431499898317
NEKEDIHSL	9	Unmodified	_NEKEDIHSL_					0	0	0		LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;nc|ENSG00000133739|Q9C099-2|LRRCC1;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1;ENST00000523669.5_1_8:86025320-86042154:+|nuORF;LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant;LRRCC1|p.M531Nfs*28|1|0.39|ENSG00000133739|chr8:85129338-85129339|-/A|frameshift_variant;LRRCC1|p.T599Yfs*2|1|0.16|ENSG00000133739|chr8:85131781-85131782|-/T|frameshift_variant;LRRCC1|p.T701Nfs*8|1|0.21|ENSG00000133739|chr8:85134973-85134974|-/A|frameshift_variant	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7673950195312	2	542.767103	1083.51965	0.62145	0.0003373	0.37954	0.000206	1.001	0.0005433	542.7671817464663	22.948	0.16787	22.948	22.839	23.007	0					5	3	2	0	0	0	0.18416	1	7721	7721		63.534	15.877	1	196280			27974	3868	18885	18957	28347	28347					-0.018766431499898317
NEKERQAAL	9	Unmodified	_NEKERQAAL_					0	0	0		CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant	CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7831420898438	2	529.783087	1057.55162	1.1551	0.00061193	-0.20645	-0.00010937	0.94861	0.00050256	529.7829630830704	16.635	0.097038	16.635	16.576	16.673	0					5	3	2	0	0	0	0.078509	1	3821	3821		85.161	26.931	1	194000			27975	364	18886	18958	28348	28348					0.025147693238068314
NEKERQAAL	9	Unmodified	_NEKERQAAL_					0	0	0		CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant	CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.78369140625	2	529.783087	1057.55162	1.2189	0.00064573	0.57112	0.00030257	1.79	0.0009483	529.7834278546012	16.714	0.11561	16.714	16.636	16.752	0					7	4	2	0	0	0	0.11898	1	4015	4015		75.043	16.813	1	197240			27976	364	18886	18958	28349	28349					0.025147693238068314
NEKERQAAL	9	Unmodified	_NEKERQAAL_					0	0	0		CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant	CAPG|p.A301V|1|0.35|ENSG00000042493|chr2:85395617-85395617|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.783447265625	2	529.783087	1057.55162	1.6344	0.00086586	-1.071	-0.00056737	0.56341	0.00029849	529.7826230828416	16.883	0.30865	16.883	16.73	17.039	0					14	6	4	0	0	0	0.13726	1	4758	4758		70.816	12.586	1	2378900			27977	364	18886	18958	28350	28350					0.025147693238068314
NEKETMQSL	9	Unmodified	_NEKETMQSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;CON__Q92764;ENSG00000197079|ENST00000246639|KRT35;CON__Q497I4;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.2554931640625	2	540.255514	1078.49647	0.96895	0.00052348	0.22675	0.0001225	1.1957	0.00064598	540.2552927912207	26.16	0.16493	26.16	26.054	26.219	0					14	6	3	0	0	0	0.026848	1	7899	7899		112.11	31.653	1	191420			27978	2650;10836	18887	18959	28351	28351					-0.03963405258969033
NEKETMQSL	9	Unmodified	_NEKETMQSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;CON__Q92764;ENSG00000197079|ENST00000246639|KRT35;CON__Q497I4;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2562255859375	2	540.255514	1078.49647	0.27161	0.00014674	1.3716	0.00074104	1.6433	0.00088778	540.2559614974062	26.41	0.39338	26.41	26.235	26.628	0					24	9	4	0	0	0	0.0040239	1	9089	9089		162.64	44.825	1	1344700			27979	2650;10836	18887	18959	28352	28352					-0.03963405258969033
NEKETMQSL	9	Unmodified	_NEKETMQSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;CON__Q92764;ENSG00000197079|ENST00000246639|KRT35;CON__Q497I4;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.2555541992188	2	540.255514	1078.49647	-0.11102	-5.9979E-05	0.55591	0.00030033	0.44489	0.00024036	540.2557592140541	26.145	0.13557	26.145	26.075	26.21	0					10	4	3	0	0	0	0.022698	1	8176	8176		117.53	37.071	1	229670			27980	2650;10836	18887	18959	28353	28353					-0.03963405258969033
NEKETMQSL	9	Unmodified	_NEKETMQSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;CON__Q92764;ENSG00000197079|ENST00000246639|KRT35;CON__Q497I4;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2557983398438	2	540.255514	1078.49647	0.30721	0.00016597	0.34348	0.00018557	0.65068	0.00035154	540.2556194718067	26.452	0.31804	26.452	26.343	26.661	0					18	6	4	0	0	0	0.0037134	1	9455	9455		164.46	46.644	1	1199100			27981	2650;10836	18887	18959	28354	28354					-0.03963405258969033
NEKFSKSH	8	Unmodified	_NEKFSKSH_					0	0	0			REV__nc|ENSG00000111305|Q2KHT4-5|GSG1	REV__nc|ENSG00000111305|Q2KHT4-5|GSG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.74737548828125	2	488.745973	975.477394	2.6012	0.0012713	0.073039	3.5698E-05	2.6742	0.001307	488.7460096852995	18.694	0.16347	18.694	18.589	18.752	0					5	3	2	0	0	0	0.50061	1	5656	5656		60.118	1.3363	1	924390	+		27982	13964	18888	18960	28355	28355					-0.011325737677111647
NEKNFERAL	9	Unmodified	_NEKNFERAL_					0	0	0		TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant;TMTC3|p.K758Nfs*31|1|0.16|ENSG00000139324|chr12:88195172-88195172|A/-|frameshift_variant;ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant	TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7916259765625	2	560.790912	1119.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.261	1	25.261	24.761	25.761	0								0	0	0	0.2882	1	8945	8945		23.523	0	1				27983	4320	18889	18961	28356	28356					0.012270558408545185
NEKQISQVL	9	Unmodified	_NEKQISQVL_					0	0	0		ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant;ARHGAP35|p.K945Rfs*3|1|0.4|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ARHGAP35|p.F938Lfs*10|1|0.18|ENSG00000160007|chr19:46921484-46921484|T/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35	ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant	ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7962036132812	2	529.795663	1057.57677	0.45502	0.00024107	0.28733	0.00015222	0.74234	0.00039329	529.7958055513528	31.147	0.2521	31.147	31.064	31.316	0					18	10	3	0	0	0	0.22823	1	9992	9992		58.246	11.789	1	352550			27984	209	18890	18962	28357	28357					0.05028824126384279
NEKQISQVL	9	Unmodified	_NEKQISQVL_					0	0	0		ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant;ARHGAP35|p.K945Rfs*3|1|0.4|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ARHGAP35|p.F938Lfs*10|1|0.18|ENSG00000160007|chr19:46921484-46921484|T/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35	ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant	ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7960205078125	2	529.795663	1057.57677	0.11423	6.0518E-05	0.52926	0.0002804	0.64349	0.00034092	529.7960613289589	31.437	0.33535	31.437	31.319	31.654	0					19	8	4	0	0	0	0.073657	1	11436	11436		86.882	19.92	1	1124000			27985	209	18890	18962	28358	28358					0.05028824126384279
NEKQISQVL	9	Unmodified	_NEKQISQVL_					0	0	0		ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant;ARHGAP35|p.K945Rfs*3|1|0.4|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ARHGAP35|p.F938Lfs*10|1|0.18|ENSG00000160007|chr19:46921484-46921484|T/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35	ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant	ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.79638671875	2	529.795663	1057.57677	0.019471	1.0316E-05	1.3615	0.00072132	1.381	0.00073163	529.7964060216256	31.197	0.24078	31.197	31.089	31.33	0					18	9	3	0	0	0	0.11411	1	10311	10311		76.17	5.3535	1	337850			27986	209	18890	18962	28359	28359					0.05028824126384279
NEKSDTHTL	9	Unmodified	_NEKSDTHTL_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7515258789062	2	522.751453	1043.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.661	1	15.661	15.161	16.161	0								0	0	0	0.17415	1	3446	3446		54.722	24.219	1				27987	2974	18891	18963	28360	28360					-0.03165216184106612
NEKSDTHTL	9	Unmodified	_NEKSDTHTL_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.751953125	2	522.751453	1043.48835	1.6538	0.00086454	-1.1015	-0.00057582	0.5523	0.00028872	522.7508891358406	15.968	0.1362	15.968	15.897	16.033	0					7	3	3	0	0	0	0.011389	1	4232	4232		138.06	44.867	1	326470			27988	2974	18891	18963	28361	28361					-0.03165216184106612
NEKSDTHTL	9	Unmodified	_NEKSDTHTL_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.751708984375	2	522.751453	1043.48835	0.44251	0.00023132	0.61338	0.00032065	1.0559	0.00055197	522.751616805535	15.905	0.11481	15.905	15.849	15.964	0					4	2	2	0	0	0	0.026538	1	4310	4310		112.41	30.17	1	326610			27989	2974	18891	18963	28362	28362					-0.03165216184106612
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.7922973632812	2	556.792066	1111.56958	1.2994	0.00072351	-1.3476	-0.00075033	-0.048169	-2.682E-05	556.7915707491763	28.946	0.28074	28.946	28.845	29.125	0					29	10	4	0	0	0	0.026656	1	9075	9075		96.034	26.406	1	468480			27990	5540	18892	18964	28363	28363					0.018257682542753173
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.79296875	2	556.792066	1111.56958	0.55962	0.00031159	-0.51774	-0.00028827	0.041876	2.3316E-05	556.7920629600053	29.204	0.65481	29.204	29.118	29.773	0					42	16	4	0	0	0	0.013298	1	10393	10393		117.81	27.441	1	3598700			27991	5540	18892	18964	28364	28364					0.018257682542753173
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.792236328125	2	556.792066	1111.56958	0.11698	6.5132E-05	-0.072448	-4.0338E-05	0.044529	2.4793E-05	556.7922332975387	28.967	0.39336	28.967	28.769	29.162	0					37	15	4	0	0	0	0.061298	1	9371	9371		75.043	27.386	1	406180			27992	5540	18892	18964	28365	28365					0.018257682542753173
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.79248046875	2	556.792066	1111.56958	1.7069	0.00095037	-1.7383	-0.00096785	-0.031398	-1.7482E-05	556.7913332456105	29.227	0.86037	29.227	29.007	29.868	0					37	18	4	0	0	0	0.0079272	1	10777	10777		129.42	47.181	1	2447100			27993	5540	18892	18964	28366	28366					0.018257682542753173
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.7928466796875	2	556.792066	1111.56958	-0.15351	-8.5476E-05	-0.39996	-0.0002227	-0.55348	-0.00030817	556.7926660388055	29.209	0.28243	29.209	29.129	29.412	0					16	6	3	0	0	0	0.067603	1	10790	10790		72.879	12.761	1	196260			27994	5540	18892	18964	28367	28367					0.018257682542753173
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.7926025390625	2	556.792066	1111.56958	-0.95087	-0.00052944	1.3273	0.00073904	0.37645	0.00020961	556.7930570009689	29.004	0.38973	29.004	28.78	29.17	0					27	10	4	0	0	0	0.0079272	1	9691	9691		129.42	52.104	1	531810			27995	5540	18892	18964	28368	28368					0.018257682542753173
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.5306396484375	3	371.53047	1111.56958	3.208	0.0011919	-3.4499	-0.0012818	-0.24193	-8.9884E-05	371.52953454822784	29.134	0.21477	29.134	29.026	29.241	0					12	4	4	0	0	0	0.21263	1	10650	10650		60.118	13.661	1	855890			27996	5540	18892	18964	28369	28369					0.018257682542753173
NELATISGAV	10	Unmodified	_NELATISGAV_					0	0	0			REV__tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1	REV__tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.76104736328125	2	487.761289	973.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.997	1	25.997	25.497	26.497	0								0	0	0	0.11266	1	9252	9252		77.318	4.4383	1		+		27997	21873	18893	18965	28370	28370					0.020211598266769215
NELEGSYY	8	Unmodified	_NELEGSYY_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7113037109375	2	487.708722	973.402892	3.5062	0.00171	0.96779	0.000472	4.474	0.002182	487.7093328455706	19.985	0.46191	19.985	19.881	20.343	0					38	15	3	0	0	0	0.69548	1	5641	5641		34.173	2.2177	1	613970	+		27998	16232	18894	18966	28371	28371					-0.08487381369752711
NELGEREKK	9	Unmodified	_NELGEREKK_					0	0	0			REV__ENSG00000170248|ENST00000307296|PDCD6IP	REV__ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7984619140625	2	551.796195	1101.57784	3.691	0.0020367	0.21603	0.00011921	3.9071	0.0021559	551.7964092971796	39.058	0.83983	39.058	38.763	39.602	0					28	18	3	0	0	0	0.063823	1	15396	15396		90.37	0	1	773600	+		27999	16357	18895	18967	28372	28372					0.031110384952853565
NELGLLVAF	9	Unmodified	_NELGLLVAF_					0	0	0		ENST00000528614.1_1_11:111285201-111285411:-|nuORF	ENST00000528614.1_1_11:111285201-111285411:-|nuORF	ENST00000528614.1_1_11:111285201-111285411:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2806701660156	2	488.279118	974.543683	-0.52103	-0.00025441	-1.3185	-0.00064379	-1.8395	-0.0008982	488.2808189632751	36.366	0.56587	36.366	36.132	36.698	0					35	11	4	0	0	0	0.25109	1	14098	14098		55.504	0.73953	1	931380			28000	10401	18896	18968	28373	28373					0.05539242074326012
NELHPTLQL	9	Unmodified	_NELHPTLQL_					0	0	0			REV__ENST00000557963.1_1_15:101421085-101421394:+|nuORF	REV__ENST00000557963.1_1_15:101421085-101421394:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7906494140625	2	532.790381	1063.56621	0.40847	0.00021763	-0.093902	-5.003E-05	0.31456	0.0001676	532.7903493492284	36.502	0.23107	36.502	36.441	36.672	0					22	12	3	0	0	0	0.1115	1	11974	11974		76.774	10.345	1	230870	+		28001	20265	18897	18969	28374	28374					0.03696841471969492
NELIKSVYI	9	Unmodified	_NELIKSVYI_					0	0	0			REV__ENSG00000165966|ENST00000402685|PDZRN4	REV__ENSG00000165966|ENST00000402685|PDZRN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8104248046875	2	539.810782	1077.60701	2.0827	0.0011242	-0.47857	-0.00025834	1.6041	0.00086591	539.8105302133611	38.576	0.39413	38.576	38.3	38.695	0					14	8	2	0	0	0	0.39395	1	15127	15127		35.178	0	1	782990	+		28002	16078	18898	18970	28375	28375					0.0713118279156788
NELILKTL	8	Unmodified	_NELILKTL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2938232421875	2	472.294768	942.574983	0.20958	9.8984E-05	-0.87015	-0.00041097	-0.66057	-0.00031198	472.2943374224309	41.568	0.18738	41.568	41.517	41.705	0					17	9	2	0	0	0	0.36488	1	15790	15790		75.043	12.936	1	123530			28003	4530	18899	18971	28376	28376					0.10139815108436778
NELILKTL	8	Unmodified	_NELILKTL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.29412841796875	2	472.294768	942.574983	-0.58497	-0.00027628	0.091733	4.3325E-05	-0.49324	-0.00023295	472.2947773101768	41.602	0.16578	41.602	41.512	41.678	0					13	8	2	0	0	0	0.44767	1	15798	15798		65.465	7.2355	1	95135			28004	4530	18899	18971	28377	28377					0.10139815108436778
NELILKTL	8	Unmodified	_NELILKTL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2947082519531	2	472.294768	942.574983	-1.4523	-0.0006859	0.4866	0.00022982	-0.96568	-0.00045609	472.29518088678844	41.364	0.15028	41.364	41.277	41.427	0					10	8	2	0	0	0	0.29212	1	13752	13752		85.161	23.053	1	46439			28005	4530	18899	18971	28378	28378					0.10139815108436778
NELILKTL	8	Unmodified	_NELILKTL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2947082519531	2	472.294768	942.574983	-2.43	-0.0011477	1.9343	0.00091356	-0.49566	-0.0002341	472.29567238772916	41.358	0.12808	41.358	41.263	41.391	0					10	7	2	0	0	0	0.44767	1	14581	14581		65.465	12.529	1	79417			28006	4530	18899	18971	28379	28379					0.10139815108436778
NELILKTL	8	Unmodified	_NELILKTL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.294677734375	2	472.294768	942.574983	0.61525	0.00029058	-1.046	-0.00049404	-0.4308	-0.00020346	472.29420042678333	41.538	0.42767	41.538	41.4	41.827	0					19	11	3	0	0	0	0.31979	1	16514	16514		80.455	23.734	1	479550			28007	4530	18899	18971	28380	28380					0.10139815108436778
NELIRQEKL	9	Unmodified	_NELIRQEKL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000070182|P11277-3|SPTB	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.8306884765625	2	571.830037	1141.64552	-1.415	-0.00080915	1.5245	0.00087173	0.10944	6.2579E-05	571.8309750314551	27.087	0.16108	27.087	27.003	27.164	0					10	4	3	0	0	0	0.063823	1	8804	8804		90.37	10.657	1	248820			28008	2899;11437	18900	18972	28381	28381					0.08036488426091637
NELITNAL	8	Unmodified	_NELITNAL_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2451477050781	2	444.245275	886.475997	-0.48042	-0.00021343	0.82057	0.00036453	0.34015	0.00015111	444.2457816857998	44.778	0.14187	44.778	44.732	44.874	0					10	6	2	0	0	0	0.27565	1	17932	17932		90.601	12.337	1	84897			28009	1623	18901	18973	28382	28382					0.028217921435157223
NELITNAL	8	Unmodified	_NELITNAL_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.244873046875	2	444.245275	886.475997	0.7807	0.00034682	-1.696	-0.00075346	-0.91534	-0.00040664	444.2447263606473	44.791	0.21288	44.791	44.683	44.896	0					12	9	2	0	0	0	0.58686	1	17950	17950		51.193	7.0759	1	56247			28010	1623	18901	18973	28383	28383					0.028217921435157223
NELKGQQVL	9	Unmodified	_NELKGQQVL_					0	0	0		nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242|MYB;chr6:135201749-135202414|375|10.11|0.42|4.6|+|ENST00000616088|MYB,MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-8|MYB;ENSG00000118513|ENST00000341911|MYB	nc|ENSG00000118513|P10242-12|MYB	nc|ENSG00000118513|P10242-12|MYB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.790771484375	2	514.790381	1027.56621	-0.1533	-7.8918E-05	2.2684	0.0011677	2.1151	0.0010888	514.7908968950579	27.665	0.15853	27.665	27.555	27.713	0					8	5	2	0	0	0	0.19605	1	8844	8844		62.107	1.9892	1	73170			28011	532	18902	18974	28384	28384					0.053528414719721695
NELKGQQVL	9	Unmodified	_NELKGQQVL_					0	0	0		nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242|MYB;chr6:135201749-135202414|375|10.11|0.42|4.6|+|ENST00000616088|MYB,MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-8|MYB;ENSG00000118513|ENST00000341911|MYB	nc|ENSG00000118513|P10242-12|MYB	nc|ENSG00000118513|P10242-12|MYB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.790771484375	2	514.790381	1027.56621	-1.581	-0.00081388	3.0953	0.0015934	1.5143	0.00077957	514.7915170164532	27.697	0.18261	27.697	27.604	27.786	0					8	4	3	0	0	0	0.18416	1	9100	9100		63.534	17.562	1	139340			28012	532	18902	18974	28385	28385					0.053528414719721695
NELKKLPE	8	Unmodified	_NELKKLPE_					0	0	0			REV__ANP32A|p.S104N|1|0.37|ENSG00000140350|chr15:68787429-68787429|C/T|missense_variant	REV__ANP32A|p.S104N|1|0.37|ENSG00000140350|chr15:68787429-68787429|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.78155517578125	2	485.782025	969.549496	-1.239	-0.00060189	0.82655	0.00040152	-0.41246	-0.00020037	485.7823411770097	29.773	0.55796	29.773	29.404	29.962	0					46	21	3	0	0	0	0.5535	1	9634	9634		54.776	0.01164	1	241920	+		28013	12168	18903	18975	28386	28386					0.06350340585993308
NELLRFQL	8	Unmodified	_NELLRFQL_					0	0	0			REV__ENSG00000151790|ENST00000536354|TDO2	REV__ENSG00000151790|ENST00000536354|TDO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7965087890625	2	516.795466	1031.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.737	1	31.737	31.237	32.237	0								0	0	0	1.7419	1	10963	10963		39.253	0	1		+		28014	15490	18904	18976	28387	28387					0.06185449197187154
NELLRFQL	8	Unmodified	_NELLRFQL_					0	0	0			REV__ENSG00000151790|ENST00000536354|TDO2	REV__ENSG00000151790|ENST00000536354|TDO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.795166015625	2	516.795466	1031.57638	1.5364	0.00079398	-1.5319	-0.00079167	0.0044714	2.3108E-06	516.7946437262639	31.877	0.36726	31.877	31.701	32.068	0					14	7	2	0	0	0	0.5535	1	11946	11946		44.117	1.7207	1	546210	+		28015	15490	18904	18976	28388	28388					0.06185449197187154
NELQKIII	8	Unmodified	_NELQKIII_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7997741699219	2	485.800217	969.585882	-0.80632	-0.00039171	0.92242	0.00044811	0.1161	5.64E-05	485.8004815629552	35.856	0.18084	35.856	35.785	35.966	0					12	8	2	0	0	0	0.61938	1	12122	12122		45.952	0	1	74377			28016	813	18905	18977	28389	28389					0.09987217482728283
NEMRRKVF	8	Unmodified	_NEMRRKVF_					0	0	0			REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.2897338867188	2	540.292568	1078.57058	-1.4794	-0.0007993	-2.766	-0.0014945	-4.2454	-0.0022938	540.2907498724131	39.347	0.14738	39.347	39.289	39.437	0					14	8	2	0	0	0	0.53424	1	14023	14023		56.721	1.2168	1	82600	+		28017	13044	18906	18978	28390	28390					0.03444027413866024
NENPSEQSEL	10	Unmodified	_NENPSEQSEL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.7503051757812	2	573.749107	1145.48366	-0.11837	-6.7916E-05	-0.13044	-7.4841E-05	-0.24881	-0.00014276	573.750387425945	27.239	0.26192	27.239	27.157	27.419	0					13	6	3	0	0	0	0.50881	1	9506	9506		44.377	0	1	157030	+		28018	13293	18907	18979	28391	28391					-0.08326145117507622
NENRTCTC	8	Unmodified	_NENRTCTC_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-3|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.6845703125	2	470.684201	939.35385	0.54877	0.0002583	-0.94768	-0.00044606	-0.39892	-0.00018776	470.68388015704613	39.293	0.72645	39.293	39.157	39.883	0					41	16	4	0	0	0	0.72381	1	15486	15486		30.504	7.4612	1	2289900			28019	4246	18908	18980	28392	28392					-0.11825316201998248
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2749633789062	2	526.274564	1050.53457	0.62864	0.00033084	-0.13745	-7.2335E-05	0.49119	0.0002585	526.2744578006206	41.231	0.19986	41.231	41.13	41.329	0					20	12	2	0	0	0	0.10821	1	13226	13226		77.533	12.068	1	162700			28020	4438	18909	18981	28393	28393					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2742919921875	2	526.274564	1050.53457	0.10031	5.2791E-05	0.13749	7.2355E-05	0.2378	0.00012515	526.2747221112138	41.575	0.35873	41.575	41.426	41.784	0					49	17	4	0	0	0	0.032181	1	15778	15778		106.88	31.837	1	1255200			28021	4438	18909	18981	28394	28394					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.274169921875	2	526.274564	1050.53457	0.47857	0.00025186	0.08486	4.466E-05	0.56343	0.00029652	526.2745090749381	41.35	0.14772	41.35	41.254	41.401	0					14	8	2	0	0	0	0.19952	1	13737	13737		61.691	0	1	132700			28022	4438	18909	18981	28395	28395					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.275634765625	2	526.274564	1050.53457	0.22973	0.0001209	0.26108	0.0001374	0.49081	0.0002583	526.2747455447816	41.535	0.3744	41.535	41.448	41.822	0					33	15	4	0	0	0	0.10821	1	16310	16310		77.533	17.603	1	713000			28023	4438	18909	18981	28396	28396					0.011328487180207958
NENSNIQVL	9	Unmodified	_NENSNIQVL_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;FIP1L1|p.R473Lfs*2|1|0.5|ENSG00000145216|chr4:53453051-53453052|-/T|frameshift_variant;FIP1L1|p.D472Efs*3|1|0.45|ENSG00000145216|chr4:53453049-53453050|-/G|frameshift_variant;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;FIP1L1|p.A332E|1|0.06|ENSG00000145216|chr4:53425943-53425943|C/A|missense_variant;ENST00000513008.5_1_4:54292015-54325613:+|nuORF	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7621459960938	2	515.76182	1029.50909	1.4338	0.00073952	-0.65303	-0.00033681	0.78082	0.00040271	515.7615201141834	38.504	0.40623	38.504	38.333	38.739	0					31	14	3	0	0	0	0.16806	1	15077	15077		65.465	5.3471	1	1109500			28024	4660	18910	18982	28397	28397					-0.00448625804438052
NENSNIQVL	9	Unmodified	_NENSNIQVL_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;FIP1L1|p.R473Lfs*2|1|0.5|ENSG00000145216|chr4:53453051-53453052|-/T|frameshift_variant;FIP1L1|p.D472Efs*3|1|0.45|ENSG00000145216|chr4:53453049-53453050|-/G|frameshift_variant;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;FIP1L1|p.A332E|1|0.06|ENSG00000145216|chr4:53425943-53425943|C/A|missense_variant;ENST00000513008.5_1_4:54292015-54325613:+|nuORF	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7618408203125	2	515.76182	1029.50909	0.74124	0.0003823	0.50235	0.00025909	1.2436	0.0006414	515.7619175381983	38.265	0.27349	38.265	38.154	38.428	0					22	13	2	0	0	0	0.12834	1	13670	13670		72.879	10.772	1	129390			28025	4660	18910	18982	28398	28398					-0.00448625804438052
NEPSLKHVLH	10	Unmodified	_NEPSLKHVLH_					0	0	0			REV__nc|ENSG00000243967|Q86XG9|NBPF5P	REV__nc|ENSG00000243967|Q86XG9|NBPF5P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.3221435546875	2	587.32238	1172.63021	-1.7464	-0.0010257	1.1319	0.00066478	-0.61455	-0.00036094	587.3229336786874	30.96	0.4461	30.96	30.753	31.199	0					27	12	3	0	0	0	0.50881	1	10553	10553		44.377	3.599	1	160570	+		28026	17066	18911	18983	28399	28399					0.05079621628897257
NEQARLTNI	9	Unmodified	_NEQARLTNI_					0	0	0			REV__RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant	REV__RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7839965820312	2	529.783087	1057.55162	0.028694	1.5202E-05	0.6467	0.00034261	0.67539	0.00035781	529.7833975346886	16.65	0.24144	16.65	16.509	16.751	0					18	8	3	0	0	0	0.30841	1	4062	4062		49.536	5.1589	1	243860	+		28027	21459	18912	18984	28400	28400					0.02514769323784094
NEREEQRD	8	Unmodified	_NEREEQRD_					0	0	0		ENST00000494189.1_1_2:182968515-182982019:+|nuORF;ENSG00000150722|ENST00000682840|PPP1R1C;nc|ENSG00000150722|Q8WVI7-2|PPP1R1C	ENST00000494189.1_1_2:182968515-182982019:+|nuORF	ENST00000494189.1_1_2:182968515-182982019:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2412719726562	2	538.241783	1074.46901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.224	1	24.224	23.724	24.724	0								0	0	0	1.7419	1	7385	7385		21.96	0	1				28028	4932	18913	18985	28401	28401					-0.06524172474996703
NERIDREE	8	Unmodified	_NERIDREE_					0	0	0			REV__ENSG00000081138|ENST00000397968|CDH7	REV__ENSG00000081138|ENST00000397968|CDH7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7538452148438	2	530.754527	1059.4945	0.37068	0.00019674	-1.5143	-0.00080374	-1.1436	-0.000607	530.7538017466566	18.554	0.073755	18.554	18.514	18.588	0					4	2	2	0	0	0	0.73426	1	4880	4880		29.15	4.9468	1	321430	+		28029	13302	18914	18986	28402	28402					-0.03286697952580653
NERKRKRWLYW	11	Unmodified	_NERKRKRWLYW_					0	0	0		ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	817.9523315429688	2	817.954958	1633.89536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.468	1	10.468	9.9675	10.968	0								0	0	0	0.45674	1	1991	1991		0.90815	0.080064	1				28030	6552	18915	18987	28403	28403					0.10377090822362334
NERSGLSTQ	9	Unmodified	_NERSGLSTQ_					0	0	0		PPARGC1A|p.C161R|1|0.32|ENSG00000109819|chr4:23829534-23829534|A/G|missense_variant	PPARGC1A|p.C161R|1|0.32|ENSG00000109819|chr4:23829534-23829534|A/G|missense_variant	PPARGC1A|p.C161R|1|0.32|ENSG00000109819|chr4:23829534-23829534|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.24591064453125	2	496.243795	990.473037	-0.06139	-3.0465E-05	3.2699	0.0016227	3.2085	0.0015922	496.2457597023962	29.462	0.1437	29.462	29.379	29.523	0					7	4	2	0	0	0	0.36892	1	9319	9319		44.377	0	1	88630			28031	11953	18916	18988	28404	28404					-0.022580829812909542
NESGELQDI	9	Unmodified	_NESGELQDI_					0	0	0		ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7301330566406	2	502.730186	1003.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.018	1	21.018	20.518	21.518	0								0	0	0	0.3693	1	5721	5721		19.997	1.6724	1				28032	7827	18917	18989	28405	28405					-0.05576611312324076
NESKHVMQL	9	Unmodified	_NESKHVMQL_					0	0	0		nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2;ARID2|p.P851Hfs*4|1|0.36|ENSG00000189079|chr12:45850671-45850671|C/-|frameshift_variant;ARID2|p.L370Ffs*18|1|0.33|ENSG00000189079|chr12:45837401-45837402|-/T|frameshift_variant;ARID2|p.Q686Hfs*19|1|0.04|ENSG00000189079|chr12:45850180-45850181|-/TGAAATGACTG|frameshift_variant;ARID2|p.S218Pfs*74|1|0.26|ENSG00000189079|chr12:45821431-45821431|T/-|frameshift_variant;ARID2|p.L293*|1|0.3|ENSG00000189079|chr12:45836843-45836843|T/-|frameshift_variant	nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.27392578125	2	543.274041	1084.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.156	1	23.156	22.656	23.656	0								0	0	0	0.22284	1	6657	6657		47.657	1.6851	1				28033	221	18918	18990	28406	28406					-0.005356889225367922
NESPNGYRLQ	10	Unmodified	_NESPNGYRLQ_					0	0	0			REV__AMOT|p.Q392Lfs*49|1|0.09|ENSG00000126016|chrX:112815575-112815576|-/TCCA|frameshift_variant;REV__ENSG00000126016|ENST00000371959|AMOT	REV__ENSG00000126016|ENST00000371959|AMOT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.3208618164062	2	589.283451	1176.55235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.747	1	17.747	17.247	18.247	0								0	0	0	0.37602	1	4293	4293		37.812	3.8899	1		+		28034	14455;12152	18919	18991	28407	28407					-0.02886436027142736
NESSVLHTL	9	Unmodified	_NESSVLHTL_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2590637207031	2	500.258914	998.503274	0.37151	0.00018585	-0.48297	-0.00024161	-0.11146	-5.5759E-05	500.2586390684683	33.623	0.15951	33.623	33.532	33.691	0					14	6	3	0	0	0	0.063823	1	10948	10948		90.37	26.163	1	161980			28035	7377	18920	18992	28408	28408					0.003962756839086978
NESSVLHTL	9	Unmodified	_NESSVLHTL_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.25897216796875	2	500.258914	998.503274	0.007581	3.7925E-06	0.14863	7.4355E-05	0.15621	7.8147E-05	500.25897830099615	33.882	0.17386	33.882	33.807	33.981	0					6	4	2	0	0	0	0.013878	1	13020	13020		132.76	55.911	1	237170			28036	7377	18920	18992	28409	28409					0.003962756839086978
NESSVLHTL	9	Unmodified	_NESSVLHTL_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.25946044921875	2	500.258914	998.503274	-0.44142	-0.00022083	1.6373	0.00081908	1.1959	0.00059825	500.259909862344	33.645	0.15287	33.645	33.58	33.733	0					9	4	3	0	0	0	0.21263	1	11826	11826		60.118	19.546	1	70411			28037	7377	18920	18992	28410	28410					0.003962756839086978
NESSVLHTL	9	Unmodified	_NESSVLHTL_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.25933837890625	2	500.258914	998.503274	-0.65882	-0.00032958	0.78852	0.00039446	0.12969	6.4881E-05	500.25931886121765	33.867	0.37018	33.867	33.748	34.118	0					22	8	4	0	0	0	0.02953	1	12888	12888		109.48	50.696	1	931770			28038	7377	18920	18992	28411	28411					0.003962756839086978
NESSVLHTL	9	Unmodified	_NESSVLHTL_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.25872802734375	2	500.258914	998.503274	1.0901	0.00054531	-1.4362	-0.00071845	-0.34609	-0.00017313	500.25814579960627	33.85	0.27217	33.85	33.732	34.005	0					13	6	3	0	0	0	0.023928	1	12919	12919		115.49	44.198	1	1354500			28039	7377	18920	18992	28412	28412					0.003962756839086978
NESVLKIIF	9	Unmodified	_NESVLKIIF_					0	0	0			REV__tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	REV__tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8142700195312	2	531.813325	1061.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.484	1	38.484	37.984	38.984	0								0	0	0	0.29774	1	15134	15134		35.618	5.1146	1		+		28040	21758	18921	18993	28413	28413					0.08375486654176711
NETIAIDVI	9	Unmodified	_NETIAIDVI_					0	0	0			REV__nc|ENSG00000151067|Q13936-15|CACNA1C	REV__nc|ENSG00000151067|Q13936-15|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.27117919921875	2	494.27149	986.528426	0.66306	0.00032773	-0.81616	-0.00040341	-0.15311	-7.5675E-05	494.27099712070606	30.905	0.41784	30.905	30.77	31.188	0					24	9	3	0	0	0	0.41113	1	11587	11587		40.778	0	1	1615100	+		28041	21063	18922	18994	28414	28414					0.034623304864680904
NETNSSSPLK	10	Unmodified	_NETNSSSPLK_					0	0	0			REV__ENST00000395468.8_1_14:55532579-55532627:+|nuORF	REV__ENST00000395468.8_1_14:55532579-55532627:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7655639648438	2	538.76456	1075.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.046	1	36.046	35.546	36.546	0								0	0	0	0.2634	1	14013	14013		56.434	1.6575	1		+		28042	18878	18923	18995	28415	28415					-0.020169470126347733
NETQIKQAL	9	Unmodified	_NETQIKQAL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7881469726562	2	522.787838	1043.56112	-0.041294	-2.1588E-05	0.44289	0.00023154	0.4016	0.00020995	522.7882069269883	26.803	0.26709	26.803	26.694	26.961	0					11	5	3	0	0	0	0.02953	1	9646	9646		109.48	13.445	1	753290			28043	2069	18924	18996	28416	28416					0.04108537609340601
NETQKISQL	9	Unmodified	_NETQKISQL_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7861938476562	2	530.785296	1059.55604	1.6658	0.00088418	-0.38747	-0.00020566	1.2783	0.00067851	530.7851113530105	27.323	0.32162	27.323	27.137	27.459	0					8	3	3	0	0	0	0.0063888	1	9769	9769		152.06	47.314	1	269320			28044	4386	18925	18997	28417	28417					0.028642337467317702
NETVAIHSL	9	Unmodified	_NETVAIHSL_					0	0	0		FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant;FAM135A|p.N999Ifs*5|1|0.39|ENSG00000082269|chr6:70526073-70526073|A/-|frameshift_variant;FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2618408203125	2	492.261456	982.50836	-0.16341	-8.044E-05	1.0736	0.00052852	0.91024	0.00044808	492.2616142014605	32.079	0.13608	32.079	32.021	32.157	0					10	5	3	0	0	0	0.048471	1	10342	10342		95.815	13.065	1	95496			28045	1674	18926	18998	28418	28418					0.01640579546540266
NETVAIHSL	9	Unmodified	_NETVAIHSL_					0	0	0		FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant;FAM135A|p.N999Ifs*5|1|0.39|ENSG00000082269|chr6:70526073-70526073|A/-|frameshift_variant;FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2611083984375	2	492.261456	982.50836	0.79329	0.00039051	-0.70631	-0.00034769	0.08699	4.2822E-05	492.2610070823014	32.385	0.21277	32.385	32.262	32.475	0					10	5	3	0	0	0	0.0061615	1	11876	11876		153.04	54.406	1	534730			28046	1674	18926	18998	28419	28419					0.01640579546540266
NETVAIHSL	9	Unmodified	_NETVAIHSL_					0	0	0		FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant;FAM135A|p.N999Ifs*5|1|0.39|ENSG00000082269|chr6:70526073-70526073|A/-|frameshift_variant;FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2604675292969	2	492.261456	982.50836	-1.2631	-0.00062177	0.9645	0.00047479	-0.29858	-0.00014698	492.26189806544613	32.129	0.16813	32.129	32.047	32.215	0					11	7	2	0	0	0	0.078509	1	10715	10715		85.161	18.732	1	69409			28047	1674	18926	18998	28420	28420					0.01640579546540266
NETVAIHSL	9	Unmodified	_NETVAIHSL_					0	0	0		FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant;FAM135A|p.N999Ifs*5|1|0.39|ENSG00000082269|chr6:70526073-70526073|A/-|frameshift_variant;FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.26263427734375	2	492.261456	982.50836	-0.057933	-2.8518E-05	1.2634	0.00062191	1.2054	0.00059339	492.26208705480275	32.334	0.14317	32.334	32.242	32.385	0					8	3	3	0	0	0	0.020674	1	12274	12274		120.87	35.708	1	231380			28048	1674	18926	18998	28421	28421					0.01640579546540266
NETVAIHSL	9	Unmodified	_NETVAIHSL_					0	0	0		FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant;FAM135A|p.N999Ifs*5|1|0.39|ENSG00000082269|chr6:70526073-70526073|A/-|frameshift_variant;FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.26080322265625	2	492.261456	982.50836	0.58512	0.00028803	-1.5507	-0.00076337	-0.96562	-0.00047534	492.2606381100881	32.327	0.1912	32.327	32.225	32.416	0					11	4	3	0	0	0	0.01873	1	12284	12284		124.08	30.937	1	496720			28049	1674	18926	18998	28422	28422					0.01640579546540266
NETVAIHSL	9	Unmodified	_NETVAIHSL_					0	0	0		FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant;FAM135A|p.N999Ifs*5|1|0.39|ENSG00000082269|chr6:70526073-70526073|A/-|frameshift_variant;FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.26226806640625	2	492.261456	982.50836	-0.03823	-1.8819E-05	0.079245	3.9009E-05	0.041015	2.019E-05	492.261696294451	32.111	0.18128	32.111	32.033	32.214	0					8	5	2	0	0	0	0.13267	1	11143	11143		71.877	15.156	1	70544			28050	1674	18926	18998	28423	28423					0.01640579546540266
NETVAIHSL	9	Unmodified	_NETVAIHSL_					0	0	0		FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant;FAM135A|p.N999Ifs*5|1|0.39|ENSG00000082269|chr6:70526073-70526073|A/-|frameshift_variant;FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	FAM135A|p.N999Kfs*2|1|0.18|ENSG00000082269|chr6:70526072-70526073|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2610778808594	2	492.261456	982.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.337	1	32.337	31.837	32.837	0								0	0	0	0.0026034	1	12181	12181		150.36	54.546	1				28051	1674	18926	18998	28424	28424					0.01640579546540266
NEVAGYYFI	9	Unmodified	_NEVAGYYFI_					0	0	0			REV__tr|U7T5J5|U7T5J5_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00171PE=3SV=1	REV__tr|U7T5J5|U7T5J5_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00171PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2606201171875	2	538.258382	1074.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.096	1	11.096	10.596	11.596	0								0	0	0	0.24544	1	2195	2195		37.159	5.6293	1		+		28052	22181	18927	18999	28425	28425					-0.03205938685005094
NEVEKKESL	9	Unmodified	_NEVEKKESL_					0	0	0		nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	nc|ENSG00000006747|Q9Y6U3-3|SCIN	nc|ENSG00000006747|Q9Y6U3-3|SCIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.28564453125	2	538.285128	1074.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.513	1	18.513	18.013	19.013	0								0	0	0	0.058887	1	5695	5695		83.647	20.113	1				28053	987	18928	19000	28426	28426					0.0214081402687043
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;TPR|p.E856D|1|0.2|ENSG00000047410|chr1:186351372-186351372|T/G|missense_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.2861328125	2	563.285994	1124.55744	0.13239	7.4574E-05	0.27949	0.00015743	0.41188	0.000232	563.2861982682916	19.354	0.21563	19.354	19.276	19.492	0					12	6	3	0	0	0	0.011389	1	5215	5215		138.06	26.414	1	1069400			28054	1219	18929	19001	28427	28427					0.00013867835468772682
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;TPR|p.E856D|1|0.2|ENSG00000047410|chr1:186351372-186351372|T/G|missense_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.2861938476562	2	563.285994	1124.55744	0.90813	0.00051154	-0.49076	-0.00027644	0.41738	0.0002351	563.2857806611203	19.411	0.14953	19.411	19.356	19.505	0					7	3	3	0	0	0	0.0049871	1	5275	5275		158.07	37.206	1	1190400			28055	1219	18929	19001	28428	28428					0.00013867835468772682
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;TPR|p.E856D|1|0.2|ENSG00000047410|chr1:186351372-186351372|T/G|missense_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.286865234375	2	563.285994	1124.55744	3.4704	0.0019548	-1.5631	-0.00088047	1.9073	0.0010743	563.2851602962786	19.566	0.1639	19.566	19.459	19.623	0					9	3	3	0	0	0	0.12834	1	6083	6083		72.879	6.45	1	1308000			28056	1219	18929	19001	28429	28429					0.00013867835468772682
NEVERTQAL	9	Unmodified	_NEVERTQAL_					0	0	0		RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF;RICTOR|p.K678Nfs*14|1|0.2|ENSG00000164327|chr5:38959796-38959796|T/-|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2742309570312	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.708	1	23.708	23.208	24.208	0								0	0	0	0.040385	1	6899	6899		90.601	15.558	1				28057	5684	18930	19002	28430	28430					0.008710630869018132
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;ENST00000473087.1_1_2:10822102-10830002:-|nuORF	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.26898193359375	2	483.26875	964.522947	0.032903	1.5901E-05	-0.53498	-0.00025854	-0.50207	-0.00024264	483.2684722389015	37.214	0.15202	37.214	37.122	37.274	0					19	8	3	0	0	0	0.58478	1	12182	12182		58.23	12.258	1	138340			28058	2935	18931	19003	28431	28431					0.039266516946554475
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;ENST00000473087.1_1_2:10822102-10830002:-|nuORF	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7707824707031	2	483.26875	964.522947	0.32914	0.00015906	0.019153	9.2559E-06	0.34829	0.00016832	483.2686618950575	37.499	0.18585	37.499	37.402	37.588	0					9	5	2	0	0	0	0.37219	1	14218	14218		82.75	16.321	1	88581			28059	2935	18931	19003	28432	28432					0.039266516946554475
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;ENST00000473087.1_1_2:10822102-10830002:-|nuORF	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2689514160156	2	483.26875	964.522947	-0.098921	-4.7805E-05	-0.49773	-0.00024054	-0.59665	-0.00028834	483.2684371771341	37.502	0.27649	37.502	37.365	37.641	0					20	8	4	0	0	0	0.099647	1	14650	14650		171.38	63.297	1	953150			28060	2935	18931	19003	28433	28433					0.039266516946554475
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;ENST00000473087.1_1_2:10822102-10830002:-|nuORF	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2684326171875	2	483.26875	964.522947	-0.59862	-0.00028929	-4.8052E-05	-2.3222E-08	-0.59866	-0.00028932	483.26873067038696	37.425	0.35867	37.425	37.315	37.674	0					21	7	4	0	0	0	0.22109	1	14616	14616		131.03	46.116	1	2102900			28061	2935	18931	19003	28434	28434					0.039266516946554475
NEVLVKTY	8	Unmodified	_NEVLVKTY_					0	0	0		ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2693176269531	2	483.26875	964.522947	0.22071	0.00010666	0.057514	2.7795E-05	0.27823	0.00013446	483.26883275235906	37.252	0.20576	37.252	37.178	37.384	0					20	10	3	0	0	0	0.37144	1	13331	13331		53.351	0	1	156520			28062	7131	18932	19004	28435	28435					0.03926651694666816
NEVMVHVV	8	Unmodified	_NEVMVHVV_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7414245605469	2	463.741845	925.469137	0.059342	2.7519E-05	-0.45577	-0.00021136	-0.39643	-0.00018384	463.7416386848669	33.167	0.15256	33.167	33.095	33.248	0					7	4	2	0	0	0	0.22195	1	12231	12231		128.82	68.522	1	136670			28063	4919	18933	19005	28436	28436					0.003421559913135752
NEVNVASMLSK	11	Unmodified	_NEVNVASMLSK_					0	0	0			REV__ENST00000435989.6_1_19:58384023-58384878:-|nuORF	REV__ENST00000435989.6_1_19:58384023-58384878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.8717956542969	3	397.872784	1190.59652	0.92028	0.00036615	-4.1596	-0.001655	-3.2393	-0.0012888	397.87132710880815	21.657	0.22798	21.657	21.564	21.792	0					12	5	4	0	0	0	0.054579	1	6931	6931		102.95	0	1	552550	+		28064	19204	18934	19006	28437	28437					0.00884832074825681
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.26043701171875	2	464.260925	926.507297	0.090582	4.2054E-05	-0.4119	-0.00019123	-0.32132	-0.00014918	464.2607015960115	29.5	0.2319	29.5	29.421	29.653	0					15	7	3	0	0	0	0.22872	1	9322	9322		124.08	15.993	1	455630			28065	2551	18935	19007	28438	28438					0.04110365177609765
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.26019287109375	2	464.260925	926.507297	0.09893	4.5929E-05	-0.9677	-0.00044927	-0.86877	-0.00040334	464.2605235125102	29.787	0.17741	29.787	29.706	29.884	0					10	4	3	0	0	0	0.24999	1	10668	10668		101.25	16.337	1	166620			28066	2551	18935	19007	28439	28439					0.04110365177609765
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2606506347656	2	464.260925	926.507297	-0.14101	-6.5466E-05	-0.39759	-0.00018459	-0.5386	-0.00025005	464.2607040550392	29.775	0.26569	29.775	29.667	29.933	0					15	5	4	0	0	0	0.11778	1	11071	11071		157.33	9.6357	1	2086200			28067	2551	18935	19007	28440	28440					0.04110365177609765
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.26055908203125	2	464.260925	926.507297	-0.15694	-7.2859E-05	-0.28935	-0.00013434	-0.44629	-0.00020719	464.2607467546843	29.555	0.25507	29.555	29.426	29.681	0					13	6	3	0	0	0	0.27635	1	9966	9966		90.37	5.4543	1	350610			28068	2551	18935	19007	28441	28441					0.04110365177609765
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.26068115234375	2	464.260925	926.507297	-0.48362	-0.00022453	-0.026619	-1.2358E-05	-0.51024	-0.00023688	464.26086438720216	29.706	0.4142	29.706	29.6	30.014	0					22	8	4	0	0	0	0.2301	1	10923	10923		148.99	28.366	1	3156400			28069	2551	18935	19007	28442	28442					0.04110365177609765
NEVVQVHAA	9	Unmodified	_NEVVQVHAA_					0	0	0		ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217;ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7520751953125	2	483.753798	965.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.65	1	23.65	23.15	24.15	0								0	0	0	0.17378	1	6874	6874		54.776	17.617	1				28070	23146	18936	19008	28443	28443					0.008917127493305088
NEVVQVHAA	9	Unmodified	_NEVVQVHAA_					0	0	0		ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217;ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7535400390625	2	483.753798	965.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.902	1	23.902	23.402	24.402	0								0	0	0	0.14881	1	8171	8171		60.118	12.203	1				28071	23146	18936	19008	28444	28444					0.008917127493305088
NEYEEELQ	8	Unmodified	_NEYEEELQ_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2208862304688	2	527.222194	1052.42983	0.10411	5.4888E-05	-1.1563	-0.00060963	-1.0522	-0.00055474	527.221625962504	11.854	0.47622	11.854	11.766	12.242	0					57	16	6	0	0	0	0.79882	1	2346	2346		19.36	19.36	1	8737800	+		28072	13480	18937	19009	28445	28445					-0.09428317549213716
NEYKGWVL	8	Unmodified	_NEYKGWVL_					0	0	0		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.76092529296875	2	504.761092	1007.50763	-0.35531	-0.00017935	0.74169	0.00037438	0.38638	0.00019503	504.7613259585361	43.422	0.264	43.422	43.315	43.579	0					13	9	2	0	0	0	0.43813	1	17358	17358		66.429	15.094	1	73171			28073	4999	18938	19010	28446	28446					0.004177848974904919
NFDFSIFNK	9	Unmodified	_NFDFSIFNK_					0	0	0		nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	nc|ENSG00000100350|Q8IWF2-2|FOXRED2	nc|ENSG00000100350|Q8IWF2-2|FOXRED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.853759765625	3	377.85383	1130.53966	0.61173	0.00023114	-0.64224	-0.00024267	-0.030515	-1.153E-05	377.85354736690647	27.063	0.46161	27.063	26.911	27.372	0					22	9	3	0	0	0	0.27249	1	9773	9773		52.937	1.744	1	946060			28074	2010	18939	19011	28447	28447					-0.020388474193850925
NFEIVSKNK	9	Unmodified	_NFEIVSKNK_					0	0	0		nc|ENSG00000173954|B1AK76|SNURFL	nc|ENSG00000173954|B1AK76|SNURFL	nc|ENSG00000173954|B1AK76|SNURFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.79833984375	2	539.798206	1077.58186	0.26249	0.00014169	0.33891	0.00018294	0.6014	0.00032464	539.7983506222971	35.826	0.51074	35.826	35.7	36.211	0					38	13	4	0	0	0	0.33044	1	13435	13435		47.657	1.6851	1	4091700			28075	11650	18940	19012	28448	28448					0.0461712798901317
NFEVITVVF	9	Unmodified	_NFEVITVVF_					0	0	0		tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2906494140625	2	534.292225	1066.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.975	1	39.975	39.475	40.475	0								0	0	0	0.30009	1	15231	15231		27.882	0	1				28076	22775	18941	19013	28449	28449					0.03927511245797177
NFEYPITKF	9	Unmodified	_NFEYPITKF_					0	0	0		tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.796630859375	2	579.795132	1157.57571	3.251	0.0018849	-0.030725	-1.7814E-05	3.2203	0.0018671	579.7950382808226	42.726	0.28758	42.726	42.608	42.896	0					20	8	3	0	0	0	0.078509	1	17061	17061		85.161	5.2216	1	573670			28077	22973	18942	19014	28450	28450					0.003226097574497544
NFFGLYCI	8	Unmodified	_NFFGLYCI_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.73199462890625	2	488.733489	975.452425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.051	1	29.051	28.551	29.551	0								0	0	0	1.7419	1	9425	9425		49.211	2.4444	1				28078	1059	18943	19015	28451	28451					-0.036283448946505814
NFFGLYCI	8	Unmodified	_NFFGLYCI_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.73260498046875	2	488.733489	975.452425	-2.8996	-0.0014172	1.688	0.00082497	-1.2117	-0.00059218	488.73406661987576	29.06	0.25661	29.06	28.953	29.209	0					11	7	2	0	0	0	0.66238	1	9729	9729		39.021	0.21535	1	107860			28079	1059	18943	19015	28452	28452					-0.036283448946505814
NFFPLWKM	8	Oxidation (M)	_NFFPLWKM(Oxidation (M))_		NFFPLWKM(1)		NFFPLWKM(77)	0	0	1		ENST00000446044.5_1_3:50686099-50686255:+|nuORF	ENST00000446044.5_1_3:50686099-50686255:+|nuORF	ENST00000446044.5_1_3:50686099-50686255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.777099609375	2	549.775688	1097.53682	3.7641	0.0020694	-1.2617	-0.00069368	2.5023	0.0013757	549.7751093997223	42.167	0.31886	42.167	42.088	42.407	0					17	8	3	0	0	0	0.34985	1	16817	16817		76.847	10.417	1	563830			28080	9615	18944	19016	28453	28453		386			-0.008043940778861725
NFFQQGAL	8	Unmodified	_NFFQQGAL_					0	0	0			REV__TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	REV__TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7309265136719	2	462.732335	923.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.255	1	48.255	47.755	48.755	0								0	0	0	1.7419	1	19191	19191		62.978	6.2574	1		+		28081	14784	18945	19017	28454	28454					-0.014670573080934446
NFILKESTS	9	Unmodified	_NFILKESTS_					0	0	0		sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1;sp|P16782|RIR1_HCMVARibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=RIR1PE=3SV=1	sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7910766601562	2	519.776939	1037.53933	0.064726	3.3643E-05	-1.5129	-0.00078639	-1.4482	-0.00075274	519.7757166442457	35.03	0.20976	35.03	34.943	35.153	0					11	5	4	0	0	0	0.21263	1	13148	13148		60.118	1.8883	1	275890			28082	22471	18946	19018	28455	28455					0.022057328607616
NFKEEIRA	8	Unmodified	_NFKEEIRA_					0	0	0		SLC4A11|p.F477Sfs*7|1|0.26|ENSG00000088836|chr20:3230548-3230548|A/-|frameshift_variant;nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11	SLC4A11|p.F477Sfs*7|1|0.26|ENSG00000088836|chr20:3230548-3230548|A/-|frameshift_variant	SLC4A11|p.F477Sfs*7|1|0.26|ENSG00000088836|chr20:3230548-3230548|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.77001953125	2	503.769448	1005.52434	1.1853	0.00059714	-0.94302	-0.00047506	0.24232	0.00012207	503.7693591916102	38.973	0.25278	38.973	38.871	39.124	0					8	5	2	0	0	0	0.51384	1	15379	15379		58.782	4.0056	1	97514			28083	1785	18947	19019	28456	28456					0.021802857834245515
NFLIHHLT	8	Unmodified	_NFLIHHLT_					0	0	0		nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A;MYO9A|p.Y1422Ifs*8|1|0.18|ENSG00000066933|chr15:71898239-71898239|A/-|frameshift_variant;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.L1961*|2|0.14|ENSG00000066933|chr15:71878089-71878089|A/-|frameshift_variant	nc|ENSG00000066933|B2RTY4-2|MYO9A	nc|ENSG00000066933|B2RTY4-2|MYO9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.78167724609375	2	497.777077	993.5396	1.0071	0.00050132	-3.1131	-0.0015496	-2.106	-0.0010483	497.7747986991259	22.009	0.41749	22.009	21.919	22.337	0					12	8	2	0	0	0	0.70055	1	7232	7232		33.516	1.9858	1	232390			28084	1398	18948	19020	28457	28457					0.04257197371271104
NFPDEMEAQIN	11	Unmodified	_NFPDEMEAQIN_					0	0	0		tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1;tr|U7T3F2|U7T3F2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00619PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	654.283447265625	2	654.28226	1306.54997	0.030828	2.017E-05	1.1863	0.0007762	1.2172	0.00079637	654.2833894925162	39.431	0.32558	39.431	39.308	39.633	0					39	12	4	0	0	0	0.33926	1	14978	14978		58.23	10.27	1	1326900			28085	22582	18949	19021	28458	28458					-0.09104652547125625
NFPFRCRFPR	10	Unmodified	_NFPFRCRFPR_					0	0	0		nc|ENSG00000129255|O75352-2|MPDU1	nc|ENSG00000129255|O75352-2|MPDU1	nc|ENSG00000129255|O75352-2|MPDU1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	670.8489379882812	2	670.345666	1338.67678	-0.74267	-0.00049785	2.682	0.0017978	1.9393	0.0013	670.3474872501705	39.157	0.13741	39.157	39.084	39.222	0					8	5	2	0	0	0	0.66699	1	14890	14890		27.882	11.165	1	53704			28086	11517	18950	19022	28459	28459					0.020987829791920376
NFPGSVQRE	9	Unmodified	_NFPGSVQRE_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2572631835938	2	517.256705	1032.49886	0.86533	0.0004476	-0.17483	-9.0434E-05	0.6905	0.00035716	517.2567498537578	17.756	0.10505	17.756	17.689	17.794	0					4	2	2	0	0	0	0.39215	1	4503	4503		42.396	0	1	95753			28087	7588	18951	19023	28460	28460					-0.0160918873900755
NFRFEEDPM	9	Unmodified	_NFRFEEDPM_					0	0	0			REV__ENST00000534350.5_1_8:146279384-146279540:+|nuORF	REV__ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.7572631835938	2	592.755681	1183.49681	0.15804	9.3681E-05	1.7831	0.0010569	1.9411	0.0011506	592.7567982059564	13.124	0.13056	13.124	13.034	13.164	0					12	7	2	0	0	0	0.61124	1	2655	2655		3.41	2.5019	1	148470	+		28088	16876	18952	19024	28461	28461					-0.08759985539109039
NFRLESLA	8	Unmodified	_NFRLESLA_					0	0	0		ENST00000528810.1_1_8:145769259-145771014:-|nuORF;nc|ENSG00000147799|Q9C0H5|ARHGAP39;ENSG00000147799|ENST00000377307|ARHGAP39	ENST00000528810.1_1_8:145769259-145771014:-|nuORF	ENST00000528810.1_1_8:145769259-145771014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2543640136719	2	475.258717	948.50288	-2.6801	-0.0012737	-2.6804	-0.0012739	-5.3605	-0.0025476	475.25560038732505	34.588	0.34723	34.588	34.431	34.779	0					20	10	3	0	0	0	0.41701	1	12270	12270		68.787	15.435	1	164060			28089	4798	18953	19025	28462	28462					0.02656900754709568
NFSQEEWEWLN	11	Unmodified	_NFSQEEWEWLN_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583;ENST00000539211.6_1_19:56918456-56925471:+|nuORF;ENST00000436972.3_1_19:56918456-56925814:+|nuORF	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	741.3220825195312	2	741.320231	1480.62591	2.2036	0.0016336	0.32727	0.00024261	2.5309	0.0018762	741.320339228691	17.708	0.11866	17.708	17.649	17.767	0					6	2	3	0	0	0	0.69524	1	5171	5171		28.081	13.217	1	882330			28090	7562	18954	19026	28463	28463					-0.09517932375320015
NFTAKLAPED	10	Unmodified	_NFTAKLAPED_					0	0	0			REV__LVRN|p.N383Tfs*4|1|0.1|ENSG00000172901|chr5:115992162-115992162|A/-|frameshift_variant	REV__LVRN|p.N383Tfs*4|1|0.1|ENSG00000172901|chr5:115992162-115992162|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.2811889648438	2	553.279846	1104.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.927	1	32.927	32.427	33.427	0								0	0	0	0.4044	1	11023	11023		29.17	2.4771	1		+		28091	16481	18955	19027	28464	28464					-0.0029516862757645868
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7425537109375	2	492.742899	983.471246	-0.59633	-0.00029384	1.1116	0.00054774	0.51528	0.0002539	492.7433650788076	47.372	0.18007	47.372	47.315	47.495	0					17	10	2	0	0	0	0.15163	1	18916	18916		67.494	21.542	1	78555			28092	3722	18956	19028	28465	28465					-0.02115091999246488
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7423400878906	2	492.742899	983.471246	0.85035	0.00041901	-1.0439	-0.00051437	-0.19353	-9.536E-05	492.74222344661905	47.389	0.1307	47.389	47.326	47.456	0					12	7	2	0	0	0	0.12834	1	18923	18923		72.879	24.964	1	105720			28093	3722	18956	19028	28466	28466					-0.02115091999246488
NFTQKLIDL	9	Unmodified	_NFTQKLIDL_					0	0	0		ENSG00000163961|ENST00000318037|RNF168;RNF168|p.T509Nfs*11|1|0.1|ENSG00000163961|chr3:196472011-196472012|-/G|frameshift_variant	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.5414733886719	3	364.541363	1090.60226	0.484	0.00017644	-0.31914	-0.00011634	0.16487	6.01E-05	364.5412299352772	24.385	0.26716	24.385	24.278	24.545	0					12	5	3	0	0	0	0.2873	1	8540	8540		49.536	0	1	763150			28094	5634	18957	19029	28467	28467					0.06058298648804339
NFVENLATAAQ	11	Unmodified	_NFVENLATAAQ_					0	0	0		ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000561199.5_1_14:24652794-24657993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.2979736328125	2	589.296027	1176.5775	1.5211	0.00089635	1.8482	0.0010891	3.3692	0.0019855	589.2970767713186	28.935	0.61561	28.935	28.753	29.369	0					34	22	2	0	0	0	0.60833	1	9187	9187		36.318	3.5052	1	63305			28095	10706	18958	19030	28468	28468					-0.00372381224565288
NFVIGNIIS	9	Unmodified	_NFVIGNIIS_					0	0	0			REV__ZDHHC3|p.A104Qfs*17|1|0.22|ENSG00000163812|chr3:44945289-44945289|C/-|frameshift_variant	REV__ZDHHC3|p.A104Qfs*17|1|0.22|ENSG00000163812|chr3:44945289-44945289|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.77655029296875	2	488.776742	975.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.233	1	28.233	27.733	28.733	0								0	0	0	0.15451	1	10204	10204		58.782	2.0609	1		+		28096	15920	18959	19031	28469	28469					0.05018357931567152
NFVKRILTR	9	Unmodified	_NFVKRILTR_					0	0	0			REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2	REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.8591918945312	2	573.858932	1145.70331	-0.14115	-8.1002E-05	0.6292	0.00036107	0.48805	0.00028007	573.8593699408403	22.782	0.31749	22.782	22.677	22.995	0					12	6	3	0	0	0	0.59802	1	7776	7776		21.96	0	1	300410	+		28097	21042	18960	19032	28470	28470					0.13628795142176386
NFVLVFQGLQ	10	Unmodified	_NFVLVFQGLQ_					0	0	0			REV__DYNC1H1|p.R1925Q|1|0.12|ENSG00000197102|chr14:102007065-102007065|G/A|missense_variant	REV__DYNC1H1|p.R1925Q|1|0.12|ENSG00000197102|chr14:102007065-102007065|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.8226318359375	2	582.824224	1163.63389	-0.19851	-0.0001157	-2.4941	-0.0014536	-2.6926	-0.0015693	582.8227263969113	32.386	0.20872	32.386	32.317	32.526	0					12	8	3	0	0	0	0.41335	1	10793	10793		54.776	9.7541	1	104540	+		28098	12754	18961	19033	28471	28471					0.05862291402763731
NFVRNFIR	8	Unmodified	_NFVRNFIR_					0	0	0			REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2977294921875	2	533.30125	1064.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.823	1	26.823	26.323	27.323	0								0	0	0	1.7419	1	9300	9300		53.351	0	1		+		28099	14946	18962	19034	28472	28472					0.05823691011164556
NFVSGIVSLG	10	Unmodified	_NFVSGIVSLG_					0	0	0			REV__ENSG00000134640|ENST00000257068|MTNR1B	REV__ENSG00000134640|ENST00000257068|MTNR1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7720031738281	2	496.7742	991.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.927	1	17.927	17.427	18.427	0								0	0	0	0.4201	1	4593	4593		19.104	1.7386	1		+		28100	14756	18963	19035	28473	28473					0.03774054068958321
NFVTPLTSL	9	Unmodified	_NFVTPLTSL_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6;ITIH6|p.Q800Rfs*102|1|0.21|ENSG00000102313|chrX:54757676-54757676|G/-|frameshift_variant	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2769470214844	2	496.276575	990.538597	2.8675	0.0014231	-1.8204	-0.00090341	1.0471	0.00051964	496.27546210239456	42.616	0.39297	42.616	42.535	42.928	0					19	11	2	0	0	0	0.53064	1	17128	17128		29.17	0	1	98846			28101	2165	18964	19036	28474	28474					0.04294938211717181
NFWFIGLM	8	Oxidation (M)	_NFWFIGLM(Oxidation (M))_		NFWFIGLM(1)		NFWFIGLM(47)	0	0	1			REV__OR52A1|p.F254Nfs*56|1|0.04|ENSG00000182070|chr11:5151610-5151611|-/ATGTT|frameshift_variant;REV__ENSG00000277932|ENST00000610445|OR52E5	REV__ENSG00000277932|ENST00000610445|OR52E5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.753662109375	2	522.254588	1042.49462	1.6003	0.00083577	0.76124	0.00039756	2.3616	0.0012333	522.2553096585413	35.867	0.53524	35.867	35.495	36.03	0					20	14	2	0	0	0	0.61433	1	13347	13347		46.766	12.594	1	706200	+		28102	16863;17837	18965	19037	28475	28475		647			-0.024923694862764023
NGDIYFIILF	10	Unmodified	_NGDIYFIILF_					0	0	0			REV__ENST00000309395.6_1_4:71848345-71848474:+|nuORF	REV__ENST00000309395.6_1_4:71848345-71848474:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.5523986816406	3	405.55338	1213.63831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.783	1	38.783	38.283	39.283	0								0	0	0	0.4201	1	15229	15229		22.58	5.1116	1		+		28103	18260	18966	19038	28476	28476					0.04003755825669941
NGEHRNRGA	9	Unmodified	_NGEHRNRGA_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7486572265625	2	505.74737	1009.48019	2.9351	0.0014844	-0.47047	-0.00023794	2.4646	0.0012465	505.7471731383396	16.225	0.26936	16.225	16.114	16.384	0					11	5	3	0	0	0	0.14603	1	4458	4458		68.787	6.6794	1	1710200			28104	3493	18967	19039	28477	28477					-0.024173055901883345
NGEREHGLQG	10	Unmodified	_NGEREHGLQG_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7603759765625	2	548.760143	1095.50573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.585	1	20.585	20.085	21.085	0								0	0	0	0.3598	1	5815	5815		41.427	3.6151	1		+		28105	14988	18968	19040	28478	28478					-0.03819875858425803
NGEREHGLQG	10	Unmodified	_NGEREHGLQG_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7601318359375	2	548.760143	1095.50573	1.8496	0.001015	-1.6688	-0.00091576	0.18077	9.9201E-05	548.7594694540445	20.726	0.26515	20.726	20.528	20.793	0					15	5	4	0	0	0	0.19191	1	6623	6623		80.455	22.225	1	1556300	+		28106	14988	18968	19040	28479	28479					-0.03819875858425803
NGFLAVKIQ	9	Unmodified	_NGFLAVKIQ_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.5310363769531	3	330.530798	988.570566	1.504	0.00049712	-1.372	-0.0004535	0.13197	4.3621E-05	330.53036794002446	18.826	1.0307	18.826	18.595	19.625	0					43	21	3	0	0	0	0.35045	1	5821	5821		36.447	0	1	10313000	+		28107	17105	18969	19041	28480	28480					0.07582350685515848
NGGNFSVGE	9	Unmodified	_NGGNFSVGE_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.6925964355469	2	440.693407	879.37226	-0.32606	-0.00014369	-0.90622	-0.00039937	-1.2323	-0.00054306	440.69277905119685	16.603	0.36463	16.603	16.38	16.744	0					12	7	2	0	0	0	0.60749	1	4781	4781		20.947	3.582	1	210710			28108	3217	18970	19042	28481	28481					-0.07225114964137447
NGKGGSVPASV	11	Unmodified	_NGKGGSVPASV_					0	0	0		ENST00000550043.1_1_14:28733783-28734191:+|nuORF	ENST00000550043.1_1_14:28733783-28734191:+|nuORF	ENST00000550043.1_1_14:28733783-28734191:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7594299316406	2	486.759081	971.503609	0.0056558	2.753E-06	-0.42365	-0.00020621	-0.41799	-0.00020346	486.7591448559334	29.418	0.2178	29.418	29.332	29.55	0					11	7	2	0	0	0	0.69524	1	9273	9273		28.081	1.3886	1	130340			28109	10610	18971	19043	28482	28482					0.016716954037633514
NGKPPVQK	8	Unmodified	_NGKPPVQK_					0	0	0		EYS|p.D2261N|1|0.19|ENSG00000188107|chr6:63999128-63999128|C/T|missense_variant	EYS|p.D2261N|1|0.19|ENSG00000188107|chr6:63999128-63999128|C/T|missense_variant	EYS|p.D2261N|1|0.19|ENSG00000188107|chr6:63999128-63999128|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.25433349609375	2	434.255977	866.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.628	1	39.628	39.128	40.128	0								0	0	0	1.7419	1	12856	12856		24.203	5.8783	1				28110	11123	18972	19044	28483	28483					0.05881221962908967
NGLAMPYR	8	Unmodified	_NGLAMPYR_					0	0	0			REV__MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	REV__MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.236083984375	2	461.234187	920.453822	-0.45978	-0.00021207	3.9695	0.0018309	3.5098	0.0016188	461.23620867027074	13.49	0.1039	13.49	13.437	13.541	0					4	2	2	0	0	0	0.68754	1	3152	3152		35.201	3.2459	1	114720	+		28111	14723	18973	19045	28484	28484					-0.009587108058894955
NGLLALSNPL	10	Unmodified	_NGLLALSNPL_					0	0	0			REV__ENST00000504376.6_1_5:22505402-22853218:-|nuORF	REV__ENST00000504376.6_1_5:22505402-22853218:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.296630859375	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.877	1	44.877	44.377	45.377	0								0	0	0	0.36846	1	17420	17420		40.058	8.1033	1		+		28112	19827	18974	19046	28485	28485					0.07118029477317123
NGLLGRGS	8	Unmodified	_NGLLGRGS_					0	0	0		nc|ENSG00000197006|Q9H1A3-2|METTL9;ENSG00000197006|ENST00000358154|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.2186279296875	2	387.216852	772.419151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.615	1	24.615	24.115	25.115	0								0	0	0	1.7419	1	8636	8636		44.117	0	1				28113	7413	18975	19047	28486	28486					0.023837893776658348
NGLLKWGVL	9	Unmodified	_NGLLKWGVL_					0	0	0			REV__ENST00000338302.7_1_1:156884783-156884978:+|nuORF	REV__ENST00000338302.7_1_1:156884783-156884978:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.3043518066406	2	500.302927	998.591301	-0.048122	-2.4075E-05	2.9808	0.0014913	2.9327	0.0014672	500.30460610690693	40.05	0.079865	40.05	39.993	40.073	0					6	4	2	0	0	0	0.50461	1	12973	12973		31.955	2.8053	1	95588	+		28114	18428	18976	19048	28487	28487					0.09194941065175044
NGLLKWGVL	9	Unmodified	_NGLLKWGVL_					0	0	0			REV__ENST00000338302.7_1_1:156884783-156884978:+|nuORF	REV__ENST00000338302.7_1_1:156884783-156884978:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.30401611328125	2	500.302927	998.591301	0.90138	0.00045096	2.0065	0.0010039	2.9079	0.0014548	500.3040782461057	40.385	0.27219	40.385	40.273	40.546	0					29	11	3	0	0	0	0.43426	1	15888	15888		38.806	6.8513	1	939010	+		28115	18428	18976	19048	28488	28488					0.09194941065175044
NGPVRSPR	8	Unmodified	_NGPVRSPR_					0	0	0			REV__ENST00000340305.9_1_1:9662821-9663067:+|nuORF	REV__ENST00000340305.9_1_1:9662821-9663067:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.7499694824219	2	441.74885	881.483148	-1.0487	-0.00046325	1.9343	0.00085449	0.88565	0.00039124	441.74975468248766	14.646	0.22725	14.646	14.598	14.825	0					14	10	2	0	0	0	0.66372	1	3209	3209		38.806	0	1	70480	+		28116	18445	18977	19049	28489	28489					0.037665695346163375
NGPVSHSSL	9	Unmodified	_NGPVSHSSL_					0	0	0		ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant;nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644;ZNF644|p.K193Nfs*16|1|0.42|ENSG00000122482|chr1:90940775-90940775|T/-|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.224609375	2	449.224874	896.435195	-0.46333	-0.00020814	-0.96291	-0.00043257	-1.4262	-0.00064071	449.2244604596299	21.429	0.22493	21.429	21.34	21.564	0					15	5	4	0	0	0	0.0073253	1	6795	6795		148.04	76.747	1	786110			28117	3265	18978	19050	28490	28490					-0.017165491760806617
NGPVSHSSL	9	Unmodified	_NGPVSHSSL_					0	0	0		ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant;nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644;ZNF644|p.K193Nfs*16|1|0.42|ENSG00000122482|chr1:90940775-90940775|T/-|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2245178222656	2	449.224874	896.435195	-1.1806	-0.00053036	0.40306	0.00018106	-0.77756	-0.0003493	449.22511991584986	21.099	0.098877	21.099	21.032	21.131	0					6	3	2	0	0	0	0.17854	1	6009	6009		64.207	12.872	1	128550			28118	3265	18978	19050	28491	28491					-0.017165491760806617
NGPVSHSSL	9	Unmodified	_NGPVSHSSL_					0	0	0		ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant;nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644;ZNF644|p.K193Nfs*16|1|0.42|ENSG00000122482|chr1:90940775-90940775|T/-|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2244567871094	2	449.224874	896.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.217	1	21.217	20.717	21.717	0								0	0	0	0.36266	1	6111	6111		21.96	3.6355	1				28119	3265	18978	19050	28492	28492					-0.017165491760806617
NGQRQILVK	9	Unmodified	_NGQRQILVK_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	352.5487060546875	3	352.548852	1054.62473	0.15819	5.5771E-05	-0.066613	-2.3484E-05	0.091579	3.2286E-05	352.54878972632724	18.445	0.11047	18.445	18.392	18.503	0					8	4	2	0	0	0	0.44593	1	4586	4586		37.812	1.4939	1	121120	+		28120	16130	18979	19051	28493	28493					0.09959942837099334
NGSPLFIW	8	Unmodified	_NGSPLFIW_					0	0	0			REV__ENST00000366905.3_1_6:161653288-161695010:-|nuORF	REV__ENST00000366905.3_1_6:161653288-161695010:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.24725341796875	2	467.245078	932.475603	4.013	0.0018751	1.4581	0.00068127	5.4711	0.0025563	467.24559698314795	25.947	0.21745	25.947	25.771	25.989	0					5	3	2	0	0	0	0.39542	1	8092	8092		71.378	8.3995	1	76065	+		28121	18589	18980	19052	28494	28494					0.006664172143246105
NGTGKLSIV	9	Unmodified	_NGTGKLSIV_					0	0	0		SMC5|p.S87L|1|0.37|ENSG00000198887|chr9:70264378-70264378|C/T|missense_variant	SMC5|p.S87L|1|0.37|ENSG00000198887|chr9:70264378-70264378|C/T|missense_variant	SMC5|p.S87L|1|0.37|ENSG00000198887|chr9:70264378-70264378|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7606506347656	2	444.761092	887.507631	-0.38135	-0.00016961	-0.82664	-0.00036766	-1.208	-0.00053727	444.76090332021414	32.784	0.36316	32.784	32.656	33.019	0					14	9	3	0	0	0	0.14603	1	12076	12076		68.787	2.9837	1	152710			28122	22426	18981	19053	28495	28495					0.05937784897480469
NGVPGPIPVM	10	Unmodified	_NGVPGPIPVM_					0	0	0			REV__ENST00000470014.6_1_1:217668369-217783710:-|nuORF	REV__ENST00000470014.6_1_1:217668369-217783710:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7645263671875	2	490.76532	979.516088	-0.551	-0.00027041	0.45769	0.00022462	-0.093308	-4.5792E-05	490.76522373536596	37.618	0.35867	37.618	37.315	37.674	0					9	7	2	0	0	0	0.38575	1	14714	14714		57.811	24.296	1	66059	+		28123	13459	18982	19054	28496	28496					0.02551015542451296
NGWTCDCRLRG	11	Carbamidomethyl (C)	_NGWTCDC(Carbamidomethyl (C))RLRG_	NGWTCDC(1)RLRG		NGWTC(-42)DC(42)RLRG		0	1	0		TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant;ENSG00000255690|ENST00000539664|TRIL	TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant	TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.53228759765625	3	446.532767	1336.57647	0.82512	0.00036845	-2.2442	-0.0010021	-1.4191	-0.00063366	446.53190396095107	17.776	0.26844	17.776	17.615	17.883	0					11	5	3	0	0	0	0.4771	1	5205	5205		45.908	9.3802	2	591700			28124	8021	18983	19055	28497	28497	347				-0.07835242136798115
NGYIRIALY	9	Unmodified	_NGYIRIALY_					0	0	0		nc|ENSG00000266200|P54317|PNLIPRP2	nc|ENSG00000266200|P54317|PNLIPRP2	nc|ENSG00000266200|P54317|PNLIPRP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.53656005859375	3	361.537953	1081.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.512	1	13.512	13.012	14.012	0								0	0	0	0.37496	1	2727	2727		13.454	0	1				28125	11798	18984	19056	28498	28498					0.054497357142281544
NHASLISALS	10	Unmodified	_NHASLISALS_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7751159667969	2	506.774731	1011.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.37	1	20.37	19.87	20.87	0								0	0	0	0.4201	1	6590	6590		21.96	2.5999	1				28126	6150	18985	19057	28499	28499					0.029602684378687627
NHFVNTNLTQ	10	Unmodified	_NHFVNTNLTQ_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.2933349609375	2	594.293819	1186.57309	0.13021	7.7382E-05	-0.23598	-0.00014024	-0.10577	-6.2861E-05	594.2930771941094	13.695	0.043119	13.695	13.675	13.718	0					4	2	2	0	0	0	0.52275	1	2718	2718		42.864	2.8061	1	47422			28127	22812	18986	19058	28500	28500					-0.012738456474835402
NHGPRLRLL	9	Unmodified	_NHGPRLRLL_					0	0	0		ENSG00000169733|ENST00000310496|RFNG;ENST00000582478.5_1_17:80008786-80009642:-|nuORF	ENSG00000169733|ENST00000310496|RFNG	ENSG00000169733|ENST00000310496|RFNG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.3267822265625	2	538.327799	1074.64105	0.2322	0.000125	-0.42185	-0.0002271	-0.18965	-0.0001021	538.327484889854	56.358	0.25052	56.358	56.299	56.55	0					21	15	2	0	0	0	0.61124	1	19361	19361		17.365	0.64758	1	92413			28128	6181	18987	19059	28501	28501					0.10671068793840277
NHLAAELY	8	Unmodified	_NHLAAELY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7361755371094	2	465.737617	929.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.355	1	30.355	29.855	30.855	0								0	0	0	1.7419	1	9666	9666		47.916	0	1				28129	1685	18988	19060	28502	28502					-0.006870746536833394
NHLFFFFLQQE	11	Unmodified	_NHLFFFFLQQE_					0	0	0			REV__ENST00000261254.7_1_12:4410574-4410667:+|nuORF	REV__ENST00000261254.7_1_12:4410574-4410667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.57952880859375	3	490.578588	1468.71394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.203	1	15.203	14.703	15.703	0								0	0	0	0.45674	1	3263	3263		11.455	0	1		+		28130	18013	18989	19061	28503	28503					-0.0016726699402624945
NHLGEIEVE	9	Unmodified	_NHLGEIEVE_					0	0	0			REV__UBE2U|p.Q44H|1|0.34|ENSG00000177414|chr1:64205704-64205704|G/T|missense_variant	REV__UBE2U|p.Q44H|1|0.34|ENSG00000177414|chr1:64205704-64205704|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7633056640625	2	520.256371	1038.49819	1.4463	0.00075244	3.4731	0.0018069	4.9194	0.0025593	520.255523282015	37.048	0.17397	37.048	36.941	37.115	0					10	5	3	0	0	0	0.39215	1	14036	14036		42.396	4.5846	1	90577	+		28131	22255	18990	19062	28504	28504					-0.019520281786753912
NHLLKALE	8	Unmodified	_NHLLKALE_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2786865234375	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.944	1	48.944	48.444	49.444	0								0	0	0	1.7419	1	18464	18464		31.955	1.4512	1				28132	4755	18991	19063	28505	28505					0.0684577765140375
NHLYLVKL	8	Unmodified	_NHLYLVKL_					0	0	0			REV__ENSG00000136695|ENST00000393200|IL36RN	REV__ENSG00000136695|ENST00000393200|IL36RN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.3004455566406	2	500.302927	998.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.748	1	23.748	23.248	24.248	0								0	0	0	1.7419	1	7298	7298		50.025	2.065	1		+		28133	14874	18992	19064	28506	28506					0.09194941065175044
NHPIISLK	8	Unmodified	_NHPIISLK_					0	0	0		ENST00000510885.2_1_4:57461090-57461750:+|nuORF	ENST00000510885.2_1_4:57461090-57461750:+|nuORF	ENST00000510885.2_1_4:57461090-57461750:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7802734375	2	461.279452	920.544351	-0.84526	-0.0003899	1.299	0.00059922	0.45379	0.00020932	461.28006539300947	32.109	0.35521	32.109	32.016	32.371	0					22	15	2	0	0	0	0.76283	1	10678	10678		25.45	2.4077	1	85916			28134	10234	18993	19065	28507	28507					0.08090081514058056
NHQGTEIVDD	10	Unmodified	_NHQGTEIVDD_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.25341796875	2	564.251817	1126.48908	3.4705	0.0019583	0.015235	8.5964E-06	3.4858	0.0019669	564.2517162315656	41.389	0.262	41.389	41.256	41.518	0					14	6	3	0	0	0	0.32758	1	16453	16453		64.207	0.901	1	308490	+		28135	12755	18994	19066	28508	28508					-0.06910421535030764
NHRSRVTV	8	Unmodified	_NHRSRVTV_					0	0	0		ENST00000472518.1_1_2:74659592-74668973:-|nuORF;RTKN|p.L511Pfs*21|1|0.22|ENSG00000114993|chr2:74426403-74426404|-/G|frameshift_variant;ENSG00000114993|ENST00000272430|RTKN	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.77392578125	2	484.772857	967.531161	2.4705	0.0011976	-0.12101	-5.8664E-05	2.3495	0.001139	484.77281023889975	38.473	0.68395	38.473	38.283	38.967	0					43	14	6	0	0	0	0.34985	1	15095	15095		76.847	21.342	1	10143000			28136	2876	18995	19067	28509	28509					0.04609643454671186
NIAEALVSK	9	Unmodified	_NIAEALVSK_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7742614746094	2	472.7742	943.533846	0.91985	0.00043488	-1.1841	-0.00055983	-0.26429	-0.00012495	472.7736287498511	33.237	0.15035	33.237	33.157	33.307	0					10	6	2	0	0	0	0.054723	1	10786	10786		93.598	31.906	1	69529			28137	7433	18996	19068	28510	28510					0.059820540689429436
NIAEALVSK	9	Unmodified	_NIAEALVSK_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7736511230469	2	472.7742	943.533846	0.65018	0.00030739	-1.3572	-0.00064164	-0.707	-0.00033425	472.773466940965	33.478	0.25851	33.478	33.39	33.649	0					15	6	3	0	0	0	0.23738	1	12392	12392		57.149	4.0598	1	410440			28138	7433	18996	19068	28511	28511					0.059820540689429436
NIALSPRPL	9	Unmodified	_NIALSPRPL_					0	0	0			REV__nc|ENSG00000139737|Q8ND83|SLAIN1	REV__nc|ENSG00000139737|Q8ND83|SLAIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7987060546875	2	490.798009	979.581465	3.4816	0.0017088	-2.7704	-0.0013597	0.71124	0.00034908	490.79653826095273	35.309	0.21996	35.309	35.244	35.464	0					15	10	2	0	0	0	0.22377	1	11951	11951		58.782	9.3404	1	32340	+		28139	15047	18997	19069	28512	28512					0.09085753059787294
NIARVNLTT	9	Unmodified	_NIARVNLTT_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.29119873046875	2	501.290548	1000.56654	-0.11254	-5.6417E-05	-0.3808	-0.00019089	-0.49334	-0.00024731	501.29039391498685	49.911	0.64775	49.911	49.713	50.361	0					45	29	2	0	0	0	0.60851	1	18146	18146		14.137	1.3254	1	75880			28140	2191	18998	19070	28513	28513					0.06628261191792717
NICRGLLVK	9	Unmodified	_NICRGLLVK_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3111877441406	2	508.307687	1014.60082	3.8595	0.0019618	2.2845	0.0011612	6.144	0.003123	508.3090020329623	19.497	0.12323	19.497	19.421	19.544	0					6	3	2	0	0	0	0.24334	1	5300	5300		58.782	7.4465	1	147700	+		28141	13067	18999	19071	28514	28514					0.09410386079059663
NICSIYNLK	9	Carbamidomethyl (C)	_NIC(Carbamidomethyl (C))SIYNLK_	NIC(1)SIYNLK		NIC(110)SIYNLK		0	1	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4;GNB4|p.D118N|1|0.28|ENSG00000114450|chr3:179414963-179414963|C/T|missense_variant	ENSG00000078369|ENST00000378609|GNB1	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7926025390625	2	562.792066	1123.56958	1.7682	0.00099514	-1.3214	-0.00074367	0.44682	0.00025147	562.7916577827565	37.471	0.30785	37.471	37.349	37.657	0					12	6	3	0	0	0	0.02953	1	14661	14661		109.48	35.223	1	269140			28142	1600	19000	19072	28515	28515	66				0.012737682542820039
NIDDVQFVF	9	Unmodified	_NIDDVQFVF_					0	0	0			REV__ENST00000541180.1_1_16:71958590-71961713:+|nuORF	REV__ENST00000541180.1_1_16:71958590-71961713:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.26904296875	2	548.769114	1095.52368	0.50494	0.0002771	-1.6573	-0.00090949	-1.1524	-0.00063239	549.2681891216283	29.266	0.26565	29.266	29.159	29.424	0					7	5	2	0	0	0	0.25109	1	10713	10713		55.504	11.387	1	409070	+		28143	20136	19001	19073	28516	28516					-0.02026553656287433
NIDMGHIL	8	Unmodified	_NIDMGHIL_					0	0	0		tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7338562011719	2	456.73402	911.453487	0.72173	0.00032964	-0.96805	-0.00044214	-0.24633	-0.00011251	456.7332777244089	37.089	0.91828	37.089	36.741	37.659	0					51	28	3	0	0	0	0.59411	1	14469	14469		50.025	5.9077	1	318680			28144	22799	19002	19074	28517	28517					-0.005781305257301028
NIDSREIAL	9	Unmodified	_NIDSREIAL_					0	0	0		tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7802734375	2	515.780013	1029.54547	0.74343	0.00038345	-0.3763	-0.00019409	0.36713	0.00018936	515.7798883838661	32.21	0.18727	32.21	32.14	32.327	0					7	5	2	0	0	0	0.44593	1	11184	11184		37.812	3.8899	1	137360			28145	22850	19003	19075	28518	28518					0.03188251092274186
NIEFITAGG	9	Unmodified	_NIEFITAGG_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.23828125	2	461.23745	920.460347	0.097738	4.5081E-05	0.30319	0.00013984	0.40092	0.00018492	461.23791166469226	26.626	0.1716	26.626	26.557	26.729	0					8	5	2	0	0	0	0.4966	1	8126	8126		32.812	0.85756	1	80166			28146	4676	19004	19076	28519	28519					-0.0030649437351257802
NIEFITAGG	9	Unmodified	_NIEFITAGG_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.23748779296875	2	461.23745	920.460347	0.77927	0.00035943	-2.1349	-0.00098471	-1.3557	-0.00062528	461.2370849391183	26.877	0.35396	26.877	26.628	26.982	0					18	8	4	0	0	0	0.22377	1	9340	9340		58.782	9.3404	1	503720			28147	4676	19004	19076	28520	28520					-0.0030649437351257802
NIEFITAGG	9	Unmodified	_NIEFITAGG_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2374572753906	2	461.23745	920.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.658	1	26.658	26.158	27.158	0								0	0	0	0.25587	1	8410	8410		42.864	10.052	1				28148	4676	19004	19076	28521	28521					-0.0030649437351257802
NIEFITAGG	9	Unmodified	_NIEFITAGG_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2372741699219	2	461.23745	920.460347	-0.15017	-6.9264E-05	-0.47383	-0.00021855	-0.62399	-0.00028781	461.2372352222986	26.887	0.2617	26.887	26.778	27.039	0					12	5	3	0	0	0	0.1424	1	9666	9666		69.628	14.851	1	551200			28149	4676	19004	19076	28522	28522					-0.0030649437351257802
NIEFITAGG	9	Unmodified	_NIEFITAGG_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.23724365234375	2	461.23745	920.460347	-0.12023	-5.5456E-05	-0.97719	-0.00045072	-1.0974	-0.00050617	461.2368966066888	26.712	0.19833	26.712	26.565	26.764	0					6	4	2	0	0	0	0.27249	1	8629	8629		52.937	17.318	1	67666			28150	4676	19004	19076	28523	28523					-0.0030649437351257802
NIEFITAGG	9	Unmodified	_NIEFITAGG_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2375793457031	2	461.23745	920.460347	-0.46055	-0.00021242	0.81049	0.00037383	0.34994	0.0001614	461.23781124505547	26.849	0.31414	26.849	26.705	27.019	0					16	6	4	0	0	0	0.07136	1	9531	9531		87.696	25.589	1	547670			28151	4676	19004	19076	28524	28524					-0.0030649437351257802
NIEGAVLIFL	10	Unmodified	_NIEGAVLIFL_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.82080078125	2	544.82115	1087.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.709	1	48.709	48.209	49.209	0								0	0	0	0.39244	1	19339	19339		32.812	21.301	1				28152	1407	19005	19077	28525	28525					0.08743773171249813
NIFMENTRFIP	11	Unmodified	_NIFMENTRFIP_					0	0	0			REV__ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant	REV__ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.23638916015625	3	461.235945	1380.68601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.592	1	13.592	13.092	14.092	0								0	0	0	0.45674	1	3343	3343		21.032	0	1		+		28153	12194	19006	19078	28526	28526					0.010890867542002525
NIGKRLNAL	9	Unmodified	_NIGKRLNAL_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.80859375	2	499.808908	997.603263	-0.69864	-0.00034919	0.54917	0.00027448	-0.14947	-7.4708E-05	499.8090578723155	25.522	0.11759	25.522	25.464	25.582	0					4	2	2	0	0	0	0.36892	1	8959	8959		45.952	10.334	1	394400			28154	4282	19007	19079	28527	28527					0.10436557808372982
NIHPTAMMF	9	Unmodified	_NIHPTAMMF_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;ENST00000437318.5_1_15:20645779-20651177:-|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000424611.5_1_15:20644728-20658919:-|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2490234375	2	531.24898	1060.48341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.239	1	35.239	34.739	35.739	0								0	0	0	0.29774	1	11550	11550		35.618	5.7767	1				28155	3560;9465	19008	19080	28528	28528					-0.04441514852055661
NIIDVLIKN	9	Unmodified	_NIIDVLIKN_					0	0	0		tr|U7SJR6|U7SJR6_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02066PE=4SV=1	tr|U7SJR6|U7SJR6_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02066PE=4SV=1	tr|U7SJR6|U7SJR6_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02066PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2919311523438	2	521.318774	1040.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.944	1	38.944	38.444	39.444	0								0	0	0	0.29356	1	14810	14810		36.447	2.2742	1				28156	22619	19009	19081	28529	28529					0.10430889028475576
NIIGLLDAF	9	Unmodified	_NIIGLLDAF_					0	0	0		ENST00000512687.5_1_5:68530748-68551520:+|nuORF;ENSG00000134058|ENST00000256443|CDK7	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2809753417969	2	488.279118	974.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.456	1	36.456	35.956	36.956	0								0	0	0	0.24724	1	13753	13753		44.117	3.5442	1				28157	3890	19010	19082	28530	28530					0.055392420743373805
NIIRYHLT	8	Unmodified	_NIIRYHLT_					0	0	0		POSTN|p.L564R|1|0.07|ENSG00000133110|chr13:37579329-37579329|A/C|missense_variant	POSTN|p.L564R|1|0.07|ENSG00000133110|chr13:37579329-37579329|A/C|missense_variant	POSTN|p.L564R|1|0.07|ENSG00000133110|chr13:37579329-37579329|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2969970703125	2	515.295633	1028.57671	1.9954	0.0010282	0.63615	0.00032781	2.6316	0.0013561	515.2959489214378	25.763	0.25126	25.763	25.686	25.937	0					8	4	3	0	0	0	0.70055	1	7780	7780		33.516	3.0119	1	128850			28158	11950	19011	19083	28531	28531					0.06356868917009706
NIKNCLPV	8	Carbamidomethyl (C)	_NIKNC(Carbamidomethyl (C))LPV_	NIKNC(1)LPV		NIKNC(42)LPV		0	1	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2613220214844	2	479.262945	956.511337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.572	1	31.572	31.072	32.072	0								0	0	0	1.7419	1	10474	10474		42.474	7.2737	1		+		28159	17188	19012	19084	28532	28532	614				0.03134131399679063
NIKRFASIV	9	Unmodified	_NIKRFASIV_					0	0	0		CASS4|p.D572N|1|0.04|ENSG00000087589|chr20:56452890-56452890|G/A|missense_variant	CASS4|p.D572N|1|0.04|ENSG00000087589|chr20:56452890-56452890|G/A|missense_variant	CASS4|p.D572N|1|0.04|ENSG00000087589|chr20:56452890-56452890|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.320068359375	2	524.319109	1046.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.345	1	20.345	19.845	20.845	0								0	0	0	0.3119	1	5703	5703		25.45	0	1				28160	382	19013	19085	28533	28533					0.10221728468172842
NILFYNILQ	9	Unmodified	_NILFYNILQ_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.8825378417969	3	379.881608	1136.623	2.3854	0.00090616	0.033823	1.2849E-05	2.4192	0.00091901	379.8816926259634	24.082	0.33561	24.082	23.964	24.3	0					28	10	5	0	0	0	0.18605	1	7049	7049		51.193	6.8155	1	1386300	+		28161	22153	19014	19086	28534	28534					0.06014889028483594
NILIGSIAL	9	Unmodified	_NILIGSIAL_					0	0	0			REV__ENSG00000214787|ENST00000651255|MS4A4E	REV__ENSG00000214787|ENST00000651255|MS4A4E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2892761230469	2	457.289485	912.564418	0.76727	0.00035086	-1.781	-0.00081445	-1.0138	-0.00046359	457.2889840465595	32.868	0.2059	32.868	32.748	32.954	0					10	5	3	0	0	0	0.41354	1	12119	12119		40.573	1.7665	1	213170	+		28162	17586	19015	19087	28535	28535					0.10463832454001931
NILLEIPNN	9	Unmodified	_NILLEIPNN_					0	0	0			REV__ENSG00000106236|ENST00000265634|NPTX2	REV__ENSG00000106236|ENST00000265634|NPTX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.1984558105469	3	347.197596	1038.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.042	1	40.042	39.542	40.542	0								0	0	0	0.35507	1	15769	15769		18.262	2.2553	1		+		28163	13814	19016	19088	28536	28536					0.053217256147036096
NILLPQQLQ	9	Unmodified	_NILLPQQLQ_					0	0	0			REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8165283203125	2	533.816399	1065.61824	0.2899	0.00015475	0.41287	0.0002204	0.70278	0.00037515	533.8162817845757	27.296	0.16906	27.296	27.186	27.355	0					6	3	2	0	0	0	0.35045	1	9884	9884		45.952	1.5748	1	256680	+		28164	13048	19017	19089	28537	28537					0.08806004885695984
NILSVAKK	8	Unmodified	_NILSVAKK_					0	0	0			REV__COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	REV__COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7816467285156	2	436.781828	871.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.837	1	17.837	17.337	18.337	0								0	0	0	1.7419	1	5368	5368		56.721	5.3856	1		+		28165	12570	19018	19090	28538	28538					0.10818965656801538
NILVTSGGTV	10	Unmodified	_NILVTSGGTV_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;ENST00000551706.1_1_12:58144639-58145133:-|nuORF;nc|ENSG00000135446|P11802-2|CDK4	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.772216796875	2	480.771657	959.528761	1.0774	0.00051798	-0.36613	-0.00017602	0.71127	0.00034196	480.7713394213037	25.038	0.14544	25.038	24.931	25.077	0					6	4	2	0	0	0	0.39566	1	7488	7488		56.721	1.9447	1	58185			28166	3995	19019	19091	28539	28539					0.047377502063341126
NIMVSVTNVN	10	Unmodified	_NIMVSVTNVN_					0	0	0			REV__ENSG00000075223|ENST00000265361|SEMA3C	REV__ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7822265625	2	545.781699	1089.54884	0.41076	0.00022418	0.37785	0.00020622	0.78861	0.00043041	545.781936434958	46.17	0.63703	46.17	45.89	46.527	0					87	39	3	0	0	0	0.55603	1	17063	17063		39.253	0	1	299190	+		28167	13225	19020	19092	28540	28540					0.007651778746549098
NINLRNKP	8	Unmodified	_NINLRNKP_					0	0	0		ENST00000477078.2_1_10:106037658-106045722:+|nuORF;nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2	ENST00000477078.2_1_10:106037658-106045722:+|nuORF	ENST00000477078.2_1_10:106037658-106045722:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7854309082031	2	484.785433	967.556313	0.00063069	3.0575E-07	-0.28216	-0.00013679	-0.28153	-0.00013648	484.7852628312274	24.904	0.24261	24.904	24.757	24.999	0					12	7	2	0	0	0	0.59411	1	7412	7412		50.025	0	1	83346			28168	1378	19021	19093	28541	28541					0.07123698257225897
NINPPPPYPG	10	Unmodified	_NINPPPPYPG_					0	0	0		TULP4|p.K830N|1|0.23|ENSG00000130338|chr6:158502153-158502153|G/C|missense_variant	TULP4|p.K830N|1|0.23|ENSG00000130338|chr6:158502153-158502153|G/C|missense_variant	TULP4|p.K830N|1|0.23|ENSG00000130338|chr6:158502153-158502153|G/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2704467773438	2	533.271824	1064.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.93	1	21.93	21.43	22.43	0								0	0	0	0.4201	1	6120	6120		21.96	1.013	1				28169	23080	19022	19094	28542	28542					-0.0005883007381726202
NIPQREVV	8	Unmodified	_NIPQREVV_					0	0	0		HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant;nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A;HNF1A|p.P379Lfs*5|3|0.42|ENSG00000135100|chr12:120996564-120996564|C/-|frameshift_variant;nc|ENSG00000135100|P20823-6|HNF1A;nc|ENSG00000135100|P20823-3|HNF1A;nc|ENSG00000135100|P20823-5|HNF1A;nc|ENSG00000135100|P20823-4|HNF1A;HNF1A|p.P291Qfs*51|4|0.47|ENSG00000135100|chr12:120994312-120994312|G/-|frameshift_variant;nc|ENSG00000275410|P35680-4|HNF1B;nc|ENSG00000275410|P35680-3|HNF1B;nc|ENSG00000275410|P35680-2|HNF1B;ENSG00000275410|ENST00000617811|HNF1B	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant;nc|ENSG00000275410|P35680-3|HNF1B	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.7713623046875	2	477.771991	953.529429	0.84173	0.00040216	-1.7346	-0.00082873	-0.89283	-0.00042657	477.7711127163617	27.064	0.61909	27.064	26.788	27.407	0					24	12	3	0	0	0	0.58597	1	9646	9646		51.335	3.6781	1	802710			28170	3966;8109	19023	19095	28543	28543					0.05080589646047429
NIPRDTVNL	9	Unmodified	_NIPRDTVNL_					0	0	0		FRZB|p.S241Kfs*38|1|0.02|ENSG00000162998|chr2:182838485-182838486|-/ATAACTACTTT|frameshift_variant;ENSG00000162998|ENST00000295113|FRZB	FRZB|p.S241Kfs*38|1|0.02|ENSG00000162998|chr2:182838485-182838486|-/ATAACTACTTT|frameshift_variant	FRZB|p.S241Kfs*38|1|0.02|ENSG00000162998|chr2:182838485-182838486|-/ATAACTACTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2901000976562	2	521.288005	1040.56146	3.3858	0.001765	0.79148	0.00041259	4.1772	0.0021775	521.2883857039025	40.968	0.62206	40.968	40.735	41.357	0					26	12	3	0	0	0	0.24095	1	16269	16269		56.721	1.9447	1	2997500			28171	5519	19024	19096	28544	28544					0.042799573291858906
NIQDHNTI	8	Unmodified	_NIQDHNTI_					0	0	0		ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7351379394531	2	477.735606	953.456658	-2.8567	-0.0013647	2.035	0.00097219	-0.8217	-0.00039256	477.73657203021463	24.411	0.17741	24.411	24.329	24.506	0					7	4	2	0	0	0	0.53424	1	7617	7617		56.721	8.8055	1	116770			28172	2645	19025	19097	28545	28545					-0.02193164147377047
NIQHTPSLQ	9	Unmodified	_NIQHTPSLQ_					0	0	0			REV__ENST00000415191.6_1_11:73824618-73881837:-|nuORF	REV__ENST00000415191.6_1_11:73824618-73881837:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7742309570312	2	519.272355	1036.53016	0.97956	0.00050866	-0.50771	-0.00026364	0.47186	0.00024502	519.2720778419206	17.825	0.47191	17.825	17.737	18.209	0					19	10	4	0	0	0	0.063171	1	4519	4519		96.19	8.494	1	2568000	+		28173	16230	19026	19098	28546	28546					0.013353842950891703
NIQTKLER	8	Unmodified	_NIQTKLER_					0	0	0		ENST00000272427.10_1_2:72945236-72945314:-|nuORF	ENST00000272427.10_1_2:72945236-72945314:-|nuORF	ENST00000272427.10_1_2:72945236-72945314:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2907409667969	2	501.290548	1000.56654	2.9248	0.0014662	-0.86347	-0.00043285	2.0613	0.0010333	501.2890016917355	48.15	0.75984	48.15	47.794	48.554	0					110	40	4	0	0	0	0.71588	1	19084	19084		29.15	0	1	326500			28174	8385	19027	19099	28547	28547					0.06628261191792717
NISHHTTVPL	10	Unmodified	_NISHHTTVPL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant;DOCK7|p.F473Lfs*8|1|0.16|ENSG00000116641|chr1:62625265-62625265|A/-|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8035888671875	2	559.80128	1117.58801	3.4693	0.0019421	1.0927	0.00061172	4.562	0.0025538	559.8018332595245	31.391	0.45947	31.391	31.19	31.65	0					26	9	3	0	0	0	0.46215	1	11768	11768		49.442	14.29	1	2933100			28175	2991	19028	19100	28548	28548					0.033916462205070275
NISIRSVEG	9	Unmodified	_NISIRSVEG_					0	0	0		nc|ENSG00000147689|Q86UY5-2|FAM83A;nc|ENSG00000147689|Q86UY5-3|FAM83A;ENSG00000147689|ENST00000690554|FAM83A;ENST00000521468.1_1_8:124195447-124212099:+|nuORF	nc|ENSG00000147689|Q86UY5-2|FAM83A	nc|ENSG00000147689|Q86UY5-2|FAM83A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.76641845703125	2	487.766906	973.519259	-0.0082086	-4.0039E-06	-0.69738	-0.00034016	-0.70559	-0.00034416	487.7664610295207	23.036	0.096226	23.036	22.962	23.058	0					6	3	2	0	0	0	0.40353	1	6609	6609		41.427	0.85399	1	55058			28176	4794	19029	19101	28549	28549					0.031439819208117115
NITPPTII	8	Unmodified	_NITPPTII_					0	0	0		NRP2|p.A109T|1|0.09|ENSG00000118257|chr2:205716266-205716266|G/A|missense_variant	NRP2|p.A109T|1|0.09|ENSG00000118257|chr2:205716266-205716266|G/A|missense_variant	NRP2|p.A109T|1|0.09|ENSG00000118257|chr2:205716266-205716266|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.7594909667969	2	434.760561	867.506569	-2.1365	-0.00092886	-0.67245	-0.00029235	-2.8089	-0.0012212	434.7601636112749	50.368	0.21307	50.368	50.297	50.51	0					19	13	2	0	0	0	0.77246	1	16494	16494		24.203	0	1	47989			28177	11863	19030	19102	28550	28550					0.06751570528570028
NITSKSMFL	9	Unmodified	_NITSKSMFL_					0	0	0		HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.5210876464844	3	347.519682	1039.53722	3.032	0.0010537	0.63568	0.00022091	3.6677	0.0012746	347.51991663904914	14.078	0.21038	14.078	13.978	14.188	0					10	4	3	0	0	0	0.37197	1	3412	3412		35.152	35.152	1	808150			28178	11211	19031	19103	28551	28551					0.019029808513096214
NIVNLAEKF	9	Unmodified	_NIVNLAEKF_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.29736328125	2	524.295299	1046.57605	2.0483	0.0010739	2.13	0.0011167	4.1783	0.0021907	524.2965080416225	25.535	0.61736	25.535	25.074	25.692	0					22	14	2	0	0	0	0.5879	1	8700	8700		23.042	0	1	80552	+		28179	16582	19032	19104	28552	28552					0.05462029477325814
NKADKLANK	9	Unmodified	_NKADKLANK_					0	0	0			REV__KRT1|p.E434K|1|0.29|ENSG00000167768|chr12:52676450-52676450|C/T|missense_variant	REV__KRT1|p.E434K|1|0.29|ENSG00000167768|chr12:52676450-52676450|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.27227783203125	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.732	1	17.732	17.232	18.232	0								0	0	0	0.097963	1	5318	5318		65.465	19.493	1		+		28180	20796	19033	19105	28553	28553					0.06628261191781348
NKAFASNL	8	Unmodified	_NKAFASNL_					0	0	0		ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA	ENSG00000063169|ENST00000594866|BICRA	ENSG00000063169|ENST00000594866|BICRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.732177734375	2	432.732335	863.450116	-0.4638	-0.0002007	-0.072454	-3.1353E-05	-0.53625	-0.00023205	432.7323387852424	25.098	0.18702	25.098	25.008	25.195	0					8	4	2	0	0	0	0.35045	1	8539	8539		76.774	1.7308	1	646930			28181	1337	19034	19106	28554	28554					0.01292942691884491
NKAGIGFL	8	Unmodified	_NKAGIGFL_					0	0	0			REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	410.2396545410156	2	410.239796	818.465038	-0.14168	-5.8123E-05	-0.22987	-9.4303E-05	-0.37155	-0.00015243	410.23954328437804	36.62	0.12899	36.62	36.559	36.688	0					10	7	2	0	0	0	0.68754	1	12009	12009		35.201	0	1	53639	+		28182	22010	19035	19107	28555	28555					0.04854434559899801
NKAIKADV	8	Unmodified	_NKAIKADV_					0	0	0		tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7558288574219	2	429.75581	857.497067	1.005	0.0004319	-1.0665	-0.00045832	-0.061491	-2.6426E-05	429.7553018911861	34.045	0.30482	34.045	33.94	34.245	0					16	6	4	0	0	0	0.59773	1	12995	12995		49.442	0	1	927800			28183	23005	19036	19108	28556	28556					0.06261802243022885
NKAIKKRG	8	Unmodified	_NKAIKKRG_					0	0	0		nc|ENSG00000156515|P19367-2|HK1;nc|ENSG00000156515|P19367-4|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7994384765625	2	457.798343	913.582134	2.4962	0.0011428	-0.19081	-8.7352E-05	2.3054	0.0010554	457.7983142819626	41.011	0.27682	41.011	40.909	41.186	0					9	6	2	0	0	0	0.66372	1	16292	16292		38.806	8.3025	1	250440			28184	11597	19037	19109	28557	28557					0.12188592499501283
NKARLHPK	8	Unmodified	_NKARLHPK_					0	0	0			REV__JUN|p.G67Wfs*40|1|0.2|ENSG00000177606|chr1:58782872-58782873|-/A|frameshift_variant	REV__JUN|p.G67Wfs*40|1|0.2|ENSG00000177606|chr1:58782872-58782873|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2967834472656	2	482.295968	962.577383	2.3851	0.0011503	-0.11673	-5.63E-05	2.2684	0.001094	482.29589872956376	43.697	0.34584	43.697	43.579	43.925	0					22	10	3	0	0	0	0.60719	1	17470	17470		47.916	47.916	1	876300	+		28185	16701	19038	19110	28558	28558					0.09459708356735064
NKASGQALAL	10	Unmodified	_NKASGQALAL_					0	0	0			REV__SLC26A7|p.K333Nfs*20|5|0.37|ENSG00000147606|chr8:91340519-91340519|A/-|frameshift_variant	REV__SLC26A7|p.K333Nfs*20|5|0.37|ENSG00000147606|chr8:91340519-91340519|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7784118652344	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.586	1	33.586	33.086	34.086	0								0	0	0	0.3805	1	11280	11280		36.447	1.246	1		+		28186	21529	19039	19111	28559	28559					0.05308572300441483
NKDTSVPI	8	Unmodified	_NKDTSVPI_					0	0	0			REV__ENST00000479887.1_1_7:143949295-143949613:-|nuORF	REV__ENST00000479887.1_1_7:143949295-143949613:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2371826171875	2	437.23745	872.460347	-0.40729	-0.00017808	-1.0599	-0.00046345	-1.4672	-0.00064153	437.2372293534067	23.37	0.26678	23.37	23.263	23.529	0					10	5	3	0	0	0	0.63854	1	8057	8057		42.864	0.46813	1	317100	+		28187	19581	19040	19112	28560	28560					0.019015056264720442
NKELEEKN	8	Unmodified	_NKELEEKN_					0	0	0		ENST00000585803.1_1_18:57863810-57864818:+|nuORF;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1	ENST00000585803.1_1_18:57863810-57864818:+|nuORF	ENST00000585803.1_1_18:57863810-57864818:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2562561035156	2	502.256371	1002.49819	-0.072514	-3.6421E-05	-0.51111	-0.00025671	-0.58363	-0.00029313	502.256292135133	26.964	0.21111	26.964	26.875	27.086	0					9	5	3	0	0	0	0.53424	1	9377	9377		56.721	0	1	215590			28188	2641	19041	19113	28561	28561					-0.0029602817871818843
NKELLAQA	8	Unmodified	_NKELLAQA_					0	0	0			REV__nc|ENSG00000155959|P61758-2|VBP1	REV__nc|ENSG00000155959|P61758-2|VBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.75323486328125	2	443.753267	885.491981	-0.49688	-0.00022049	-0.12116	-5.3767E-05	-0.61804	-0.00027426	443.75315593040375	23.347	0.63981	23.347	23.297	23.937	0					26	15	2	0	0	0	0.66372	1	7315	7315		38.806	3.1879	1	323250	+		28189	15615	19042	19114	28562	28562					0.044654983804207404
NKEVQELLE	9	Unmodified	_NKEVQELLE_					0	0	0		ENST00000515221.2_1_17:48560779-48561997:+|nuORF;ENST00000513650.1_1_17:48561664-48562219:+|nuORF;ENSG00000136444|ENST00000258955|RSAD1	ENST00000515221.2_1_17:48560779-48561997:+|nuORF	ENST00000515221.2_1_17:48560779-48561997:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.29345703125	2	551.292953	1100.57135	1.6373	0.00090264	-0.8998	-0.00049606	0.73752	0.00040659	551.2925560565271	35.537	0.25653	35.537	35.459	35.716	0					19	7	4	0	0	0	0.14578	1	13790	13790		68.846	1.8842	1	196060			28190	4079	19043	19115	28563	28563					0.025091005439207947
NKFGSDLWF	9	Unmodified	_NKFGSDLWF_					0	0	0			REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	371.8492431640625	3	371.850308	1112.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.516	1	29.516	29.016	30.016	0								0	0	0	0.36609	1	9324	9324		20.947	0.95016	1		+		28191	18383	19044	19116	28564	28564					-0.022668300738359903
NKFTNDLI	8	Unmodified	_NKFTNDLI_					0	0	0			REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7585144042969	2	482.758549	963.502546	0.046858	2.2621E-05	-0.70924	-0.00034239	-0.66239	-0.00031977	482.7583321336384	32.701	0.28558	32.701	32.581	32.866	0					19	11	2	0	0	0	0.66372	1	10615	10615		38.806	3.1879	1	88768	+		28192	21759	19045	19117	28565	28565					0.019334810348709652
NKFTNDLI	8	Unmodified	_NKFTNDLI_					0	0	0			REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7582702636719	2	482.758549	963.502546	0.18645	9.0012E-05	-0.68133	-0.00032892	-0.49488	-0.00023891	482.75827332008714	32.756	0.23946	32.756	32.639	32.878	0					9	6	2	0	0	0	0.68432	1	11444	11444		35.618	2.1027	1	86465	+		28193	21759	19045	19117	28566	28566					0.019334810348709652
NKFTNDLI	8	Unmodified	_NKFTNDLI_					0	0	0			REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.75897216796875	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.752	1	32.752	32.252	33.252	0								0	0	0	1.7419	1	11420	11420		42.396	1.618	1		+		28194	21759	19045	19117	28567	28567					0.019334810348709652
NKFVKCKK	8	Carbamidomethyl (C)	_NKFVKC(Carbamidomethyl (C))KK_	NKFVKC(1)KK		NKFVKC(42)KK		0	1	0		nc|ENSG00000204176|Q9BQS2-2|SYT15;ENSG00000277758|ENST00000615923|SYT15B;ENSG00000204176|ENST00000374321|SYT15;nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15	nc|ENSG00000204176|Q9BQS2-2|SYT15	nc|ENSG00000204176|Q9BQS2-2|SYT15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.3062133789062	2	526.307687	1050.60082	-1.2229	-0.00064364	-1.7977	-0.00094612	-3.0206	-0.0015898	526.3069302615443	21.377	0.34083	21.377	21.232	21.572	0					14	7	3	0	0	0	0.64096	1	6179	6179		42.474	10.52	1	116250			28195	7677	19046	19118	28568	28568	330				0.07754386079068354
NKGIGNLK	8	Unmodified	_NKGIGNLK_					0	0	0			REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1;REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2547912597656	2	422.255977	842.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.917	1	31.917	31.417	32.417	0								0	0	0	1.7419	1	11043	11043		50.025	7.5501	1		+		28196	22079;21863	19047	19119	28569	28569					0.06985221962895594
NKGIKLDFK	9	Unmodified	_NKGIKLDFK_					0	0	0		ENST00000511718.5_1_5:79809433-79814625:+|nuORF;ENST00000509292.1_1_5:79797630-79817970:+|nuORF;ENSG00000152380|ENST00000282226|FAM151B	ENST00000511718.5_1_5:79809433-79814625:+|nuORF	ENST00000511718.5_1_5:79809433-79814625:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8170166015625	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.572	1	50.572	50.072	51.072	0								0	0	0	0.35899	1	19924	19924		23.042	0	1				28197	5011	19048	19120	28570	28570					0.09498308748334239
NKGLRLAQ	8	Unmodified	_NKGLRLAQ_					0	0	0		FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1;nc|ENSG00000164946|Q5H8C1-2|FREM1	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2732238769531	2	450.274701	898.534849	0.057709	2.5985E-05	-0.30871	-0.00013901	-0.25101	-0.00011302	450.274463911326	52.689	0.39542	52.689	52.585	52.981	0					65	24	4	0	0	0	0.7887	1	15678	15678		12.959	0.75233	1	912320			28198	5747	19049	19121	28571	28571					0.08152313228515595
NKGMFPGFK	9	Unmodified	_NKGMFPGFK_					0	0	0		ENSG00000136492|ENST00000259008|BRIP1	ENSG00000136492|ENST00000259008|BRIP1	ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2669067382812	2	513.265487	1024.51642	1.0997	0.00056441	1.1916	0.00061158	2.2912	0.001176	513.2663252995258	35.84	0.16301	35.84	35.751	35.914	0					11	4	3	0	0	0	0.30951	1	13477	13477		49.442	3.4693	1	203840			28199	4085	19050	19122	28572	28572					0.00514435262311963
NKIALPQYD	9	Unmodified	_NKIALPQYD_					0	0	0			REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant	REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2828979492188	2	531.284931	1060.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.572	1	22.572	22.072	23.072	0								0	0	0	0.27939	1	7660	7660		39.253	3.6345	1		+		28200	20755;15657	19051	19123	28573	28573					0.027454390976799914
NKIDQLIVF	9	Unmodified	_NKIDQLIVF_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.316162109375	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.895	1	50.895	50.395	51.395	0								0	0	0	0.36609	1	15261	15261		20.947	1.8434	1				28201	1272	19052	19124	28574	28574					0.08222889028479585
NKIEENHLN	9	Unmodified	_NKIEENHLN_					0	0	0		tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.8575134277344	3	370.856122	1109.54654	3.2	0.0011867	0.47045	0.00017447	3.6705	0.0013612	370.8562914367001	23.754	0.41242	23.754	23.65	24.062	0					15	8	2	0	0	0	0.4966	1	8110	8110		32.812	0.061884	1	2652000			28202	22928	19053	19125	28575	28575					-0.003855345388274145
NKIKEMPA	8	Unmodified	_NKIKEMPA_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.25775146484375	2	465.757495	929.500437	0.068298	3.181E-05	-0.90271	-0.00042045	-0.83441	-0.00038863	465.757219380731	29.099	0.27547	29.099	28.949	29.224	0					19	10	3	0	0	0	0.72381	1	9119	9119		30.504	0	1	145070			28203	4289	19054	19126	28576	28576					0.03286729025387558
NKILLHLE	8	Unmodified	_NKILLHLE_					0	0	0		RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant;RBM44|p.I38Nfs*44|1|0.32|ENSG00000177483|chr2:237821162-237821163|-/A|frameshift_variant;RBM44|p.N125Mfs*4|1|0.07|ENSG00000177483|chr2:237823503-237823503|A/-|frameshift_variant;ENSG00000177483|ENST00000316997|RBM44	RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant	RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.2015075683594	3	327.202682	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.517	1	45.517	45.017	46.017	0								0	0	0	1.7419	1	14647	14647		11.511	1.2458	1				28204	12010	19055	19127	28577	28577					0.0960663720256889
NKISSNPLG	9	Unmodified	_NKISSNPLG_					0	0	0			REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2575988769531	2	465.256174	928.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.755	1	42.755	42.255	43.255	0								0	0	0	0.19749	1	16768	16768		51.335	10.557	1		+		28205	14715	19056	19128	28578	28578					0.030685968920806772
NKKADGVKEP	10	Unmodified	_NKKADGVKEP_					0	0	0		nc|ENSG00000058404|Q13554-6|CAMK2B	nc|ENSG00000058404|Q13554-6|CAMK2B	nc|ENSG00000058404|Q13554-6|CAMK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.5363464355469	3	362.536501	1084.58767	0.47914	0.0001737	-0.80191	-0.00029072	-0.32278	-0.00011702	362.53617235528765	17.732	0.24776	17.732	17.608	17.855	0					14	6	3	0	0	0	0.46128	1	5060	5060		45.908	0	1	859090			28206	11430	19057	19129	28579	28579					0.04876226500641678
NKKDQTSDVSA	11	Unmodified	_NKKDQTSDVSA_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.79345703125	2	596.793849	1191.57314	0.09396	5.6075E-05	-0.8999	-0.00053706	-0.80594	-0.00048098	596.7934775031439	23.17	0.14211	23.17	23.08	23.222	0					5	3	2	0	0	0	0.70609	1	7644	7644		27.047	2.5281	1	533260	+		28207	16193	19058	19130	28580	28580					-0.014978904381450775
NKKDVNLSK	9	Unmodified	_NKKDVNLSK_					0	0	0		ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.806396484375	2	523.303655	1044.59276	3.416	0.0017876	1.2943	0.00067734	4.7103	0.0024649	523.3042191746134	39.483	0.68377	39.483	39.273	39.957	0					54	15	4	0	0	0	0.11898	1	15563	15563		75.043	15.113	1	1472900			28208	7498	19059	19131	28581	28581					0.07224530363282611
NKKIDEKDIL	10	Unmodified	_NKKIDEKDIL_					0	0	0		tr|U7SVX6|U7SVX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01374PE=4SV=1	tr|U7SVX6|U7SVX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01374PE=4SV=1	tr|U7SVX6|U7SVX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01374PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.3522338867188	2	608.350803	1214.68705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.994	1	38.994	38.494	39.494	0								0	0	0	0.27575	1	15320	15320		54.722	20.636	1				28209	22849	19060	19132	28582	28582					0.08829624394775237
NKKMTRDE	8	Unmodified	_NKKMTRDE_					0	0	0			REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A;REV__FAM135A|p.N1165Ifs*3|1|0.07|ENSG00000082269|chr6:70526577-70526578|-/T|frameshift_variant	REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2588195800781	2	511.258391	1020.50223	3.0833	0.0015764	-1.0052	-0.00051394	2.0781	0.0010624	511.2583954985147	34.487	0.65184	34.487	34.261	34.913	0					19	13	2	0	0	0	0.51384	1	13250	13250		58.782	5.8453	1	504830	+		28210	20942;13315	19061	19133	28583	28583					-0.007202619566442081
NKKNLSAQF	9	Unmodified	_NKKNLSAQF_					0	0	0			REV__tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1	REV__tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2918701171875	2	525.290548	1048.56654	3.4444	0.0018093	0.57707	0.00030313	4.0214	0.0021124	525.290857766539	42.514	1.0343	42.514	42.323	43.357	0					61	31	3	0	0	0	0.17854	1	16911	16911		64.207	16.55	1	295310	+		28211	21925	19062	19134	28584	28584					0.044202611917853574
NKKRNVEKP	9	Unmodified	_NKKRNVEKP_					0	0	0			REV__NREP|p.P31L|1|0.14|ENSG00000134986|chr5:111731036-111731036|G/A|missense_variant	REV__NREP|p.P31L|1|0.14|ENSG00000134986|chr5:111731036-111731036|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	556.831298828125	2	556.830372	1111.64619	1.2995	0.00072359	-0.81037	-0.00045124	0.48911	0.00027235	556.8302165655317	14.227	0.078253	14.227	14.177	14.255	0					5	3	2	0	0	0	0.59802	1	2905	2905		21.96	1.013	1	43250	+		28212	14776	19063	19135	28585	28585					0.0948332786579158
NKKTENLVF	9	Unmodified	_NKKTENLVF_					0	0	0			REV__THAP5|p.F275Lfs*37|1|0.13|ENSG00000177683|chr7:108564554-108564554|A/-|frameshift_variant	REV__THAP5|p.F275Lfs*37|1|0.13|ENSG00000177683|chr7:108564554-108564554|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.30908203125	2	546.806031	1091.59751	-1.5024	-0.0008215	3.9862	0.0021797	2.4838	0.0013582	546.8086469082368	24.983	0.71587	24.983	24.455	25.171	0					27	16	3	0	0	0	0.42902	1	7802	7802		39.253	0.44669	1	401930	+		28213	16706	19064	19136	28586	28586					0.05537414506034111
NKKTLSDP	8	Unmodified	_NKKTLSDP_					0	0	0		ENSG00000107731|ENST00000335350|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7506408691406	2	451.750724	901.486896	-0.11124	-5.0252E-05	-0.42418	-0.00019163	-0.53542	-0.00024188	451.7506026846452	26.732	0.56832	26.732	26.376	26.944	0					29	11	4	0	0	0	0.28427	1	9523	9523		87.754	2.8388	1	1461900			28214	2492	19065	19137	28587	28587					0.03221194517800541
NKKVKGESLS	10	Unmodified	_NKKVKGESLS_					0	0	0			REV__nc|ENSG00000140632|Q49A26-4|GLYR1	REV__nc|ENSG00000140632|Q49A26-4|GLYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.318115234375	2	545.316763	1088.61897	2.3505	0.0012818	-0.16529	-9.0134E-05	2.1852	0.0011916	545.3165565870584	51.035	1.0997	51.035	50.832	51.932	0					96	70	3	0	0	0	0.6796	1	15850	15850		24.519	4.5224	1	141560	+		28215	15086	19066	19138	28588	28588					0.07820799534783873
NKKVSEEKK	9	Unmodified	_NKKVSEEKK_					0	0	0			REV__MAP1B|p.D769N|1|0.08|ENSG00000131711|chr5:72195660-72195660|G/A|missense_variant	REV__MAP1B|p.D769N|1|0.08|ENSG00000131711|chr5:72195660-72195660|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3172607421875	2	545.316763	1088.61897	0.37596	0.00020502	0.30668	0.00016724	0.68265	0.00037226	545.3167659633775	51.55	1.0552	51.55	51.212	52.267	0					92	64	2	0	0	0	0.59802	1	18379	18379		21.96	1.9631	1	92181	+		28216	20861	19067	19139	28589	28589					0.07820799534761136
NKKVTALIV	9	Unmodified	_NKKVTALIV_					0	0	0			REV__ENST00000511516.5_1_5:39003663-39003717:-|nuORF	REV__ENST00000511516.5_1_5:39003663-39003717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.3257751464844	2	493.32386	984.633166	-0.49666	-0.00024501	0.41831	0.00020636	-0.07835	-3.8652E-05	493.3240761772734	33.773	2.1025	33.773	33.609	35.711	0					124	55	5	0	0	0	0.1115	1	12804	12804		76.774	0	1	29800000	+		28217	19880	19068	19140	28590	28590					0.14023496753702602
NKKVTALIV	9	Unmodified	_NKKVTALIV_					0	0	0			REV__ENST00000511516.5_1_5:39003663-39003717:-|nuORF	REV__ENST00000511516.5_1_5:39003663-39003717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.3242492675781	2	493.32386	984.633166	-0.74611	-0.00036808	0.44006	0.00021709	-0.30605	-0.00015098	493.324074953674	33.745	0.93447	33.745	33.634	34.568	0					65	23	4	0	0	0	0.22377	1	13248	13248		58.782	5.4305	1	16389000	+		28218	19880	19068	19140	28591	28591					0.14023496753702602
NKLIKVAV	8	Unmodified	_NKLIKVAV_					0	0	0			REV__SYK|p.E442Sfs*31|1|0.11|ENSG00000165025|chr9:90877711-90877711|C/-|frameshift_variant	REV__SYK|p.E442Sfs*31|1|0.11|ENSG00000165025|chr9:90877711-90877711|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.7998962402344	2	442.80002	883.585488	-1.1431	-0.00050618	0.36381	0.0001611	-0.77932	-0.00034508	442.80021576856575	33.568	0.19778	33.568	33.48	33.678	0					10	7	2	0	0	0	0.39542	1	11270	11270		71.378	0	1	206460	+		28219	16016	19069	19141	28592	28592					0.13903842553509094
NKLLVVAK	8	Unmodified	_NKLLVVAK_					0	0	0			REV__ENST00000489671.5_2_3:141820662-141868333:-|nuORF	REV__ENST00000489671.5_2_3:141820662-141868333:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.799560546875	2	442.80002	883.585488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.509	1	33.509	33.009	34.009	0								0	0	0	1.7419	1	10904	10904		24.203	5.8783	1		+		28220	19702	19070	19142	28593	28593					0.13903842553509094
NKLSSNKLL	9	Unmodified	_NKLSSNKLL_					0	0	0			REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8082275390625	2	508.808574	1015.60259	-0.39642	-0.0002017	0.0095434	4.8557E-06	-0.38688	-0.00019685	508.80846131006825	22.094	0.2142	22.094	21.939	22.153	0					6	4	2	0	0	0	0.45358	1	7441	7441		37.159	2.9866	1	183330	+		28221	22124	19071	19143	28594	28594					0.09541718368666352
NKMNRKMN	8	Oxidation (M)	_NKM(Oxidation (M))NRKMN_		NKM(0.994)NRKM(0.006)N		NKM(22)NRKM(-22)N	0	0	1		ENST00000478981.1_1_15:59956254-59956317:-|nuORF	ENST00000478981.1_1_15:59956254-59956317:-|nuORF	ENST00000478981.1_1_15:59956254-59956317:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2623291015625	2	526.26041	1050.50627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.867	1	32.867	32.367	33.367	0								0	0	0	1.7419	1	11474	11474		42.474	8.3019	2				28222	9938	19072	19144	28595	28595		400			-0.016964957345635412
NKNELNNKK	9	Unmodified	_NKNELNNKK_					0	0	0			REV__ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	REV__ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.87310791015625	3	367.871883	1100.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.136	1	27.136	26.636	27.636	0								0	0	0	0.27939	1	9677	9677		31.634	1.0654	1		+		28223	17204	19073	19145	28596	28596					0.04754744732167637
NKNIVYTTP	9	Unmodified	_NKNIVYTTP_					0	0	0			REV__tr|U7SJJ7|U7SJJ7_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02188PE=4SV=1	REV__tr|U7SJJ7|U7SJJ7_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02188PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.785888671875	2	525.284931	1048.55531	1.3878	0.00072899	-3.4032	-0.0017877	-2.0154	-0.0010587	525.7847232780879	19.832	0.10769	19.832	19.766	19.873	0					5	3	2	0	0	0	0.46194	1	5214	5214		29.15	4.6304	1	72966	+		28224	21741	19074	19146	28597	28597					0.032974390976505674
NKNLLVAN	8	Unmodified	_NKNLLVAN_					0	0	0		tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.260009765625	2	443.261259	884.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.852	1	29.852	29.352	30.352	0								0	0	0	1.7419	1	10094	10094		40.573	1.7665	1				28225	22680	19075	19147	28598	28598					0.0610920461731439
NKPIIAVFE	9	Unmodified	_NKPIIAVFE_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.800537109375	2	515.800217	1029.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.645	1	44.645	44.145	45.145	0								0	0	0	0.1836	1	17888	17888		53.351	12.779	1				28226	4031	19076	19148	28599	28599					0.07227217482704873
NKPLLIRR	8	Unmodified	_NKPLLIRR_					0	0	0			REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.8902587890625	3	337.225821	1008.65563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.011	1	18.011	17.511	18.511	0								0	0	0	1.7419	1	5307	5307		17.365	0	1		+		28227	17202	19077	19149	28600	28600					0.15165140941985555
NKPLVLSL	8	Unmodified	_NKPLVLSL_					0	0	0		ENSG00000180999|ENST00000367727|C1orf105	ENSG00000180999|ENST00000367727|C1orf105	ENSG00000180999|ENST00000367727|C1orf105	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.2840270996094	2	442.284203	882.553853	-0.27473	-0.00012151	0.96813	0.00042819	0.6934	0.00030668	442.28466609890194	33.582	0.75839	33.582	33.269	34.028	0					49	18	4	0	0	0	0.64096	1	12941	12941		42.474	0	1	1776200			28228	6829	19078	19150	28601	28601					0.10787849799555715
NKPPKRYIP	9	Unmodified	_NKPPKRYIP_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000476142.1_1_3:56651192-56651654:+|nuORF	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.8309326171875	2	556.832383	1111.65021	0.11662	6.4936E-05	-2.3265	-0.0012955	-2.2099	-0.0012305	556.8309123373061	22.547	0.067261	22.547	22.505	22.572	0					4	2	2	0	0	0	0.51817	1	6660	6660		30.504	4.9296	1	45088			28229	411	19079	19151	28602	28602					0.09885417359510029
NKPQIRGG	8	Unmodified	_NKPQIRGG_					0	0	0			REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2515563964844	2	435.251226	868.487899	0.67358	0.00029318	-0.028723	-1.2502E-05	0.64486	0.00028067	435.2511148447803	46.197	1.0403	46.197	45.976	47.016	0					80	63	2	0	0	0	0.75243	1	17144	17144		26.796	0	1	131510	+		28230	14095	19080	19152	28603	28603					0.04839453677379879
NKQHLQLKAQ	10	Unmodified	_NKQHLQLKAQ_					0	0	0		ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000272674|ENST00000609684|PCDHB16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.23504638671875	3	403.235045	1206.6833	0.41332	0.00016666	-0.70176	-0.00028298	-0.28844	-0.00011631	403.2346798579142	22.417	0.21661	22.417	22.334	22.55	0					10	4	3	0	0	0	0.35046	1	7584	7584		61.691	0	1	331510			28231	8091	19082	19153	28604	28604					0.08822999411563615
NKQMMPLK	8	Unmodified	_NKQMMPLK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;ENST00000467305.1_1_13:96637506-96665674:-|nuORF;ENST00000465196.5_1_13:96635825-96665653:-|nuORF	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2665710449219	2	495.267173	988.519793	-2.4393	-0.0012081	1.2607	0.00062438	-1.1786	-0.00058372	495.2673738784551	25.678	0.10274	25.678	25.633	25.735	0					4	2	2	0	0	0	0.65276	1	8214	8214		40.573	0	1	85949			28232	2180	19083	19154	28605	28605					0.02507362044650563
NKQTKYILL	9	Unmodified	_NKQTKYILL_					0	0	0			REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant	REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8404541015625	2	560.839874	1119.66519	1.8087	0.0010144	-1.211	-0.00067915	0.59774	0.00033524	560.8394180884519	35.121	0.41707	35.121	35.015	35.432	0					16	8	4	0	0	0	0.50761	1	13569	13569		31.53	10.583	1	427150	+		28233	13437	19084	19155	28606	28606					0.11014864436833705
NKQTTTIN	8	Unmodified	_NKQTTTIN_					0	0	0		nc|ENSG00000186960|Q86U37|LINC01551;ENST00000399387.8_1_14:29242013-29261464:+|nuORF	nc|ENSG00000186960|Q86U37|LINC01551	nc|ENSG00000186960|Q86U37|LINC01551	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.247314453125	2	460.245806	918.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.722	1	45.722	45.222	46.222	0								0	0	0	1.7419	1	18319	18319		21.96	0	1				28234	9236	19085	19156	28607	28607					0.014560065124214816
NKRESSSGSRG	11	Unmodified	_NKRESSSGSRG_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.2918701171875	2	582.789432	1163.56431	1.382	0.00080543	0.12593	7.3393E-05	1.508	0.00087882	582.7894701585533	44.664	0.75436	44.664	44.112	44.867	0					67	42	3	0	0	0	0.65797	1	17291	17291		31.634	2.4847	1	234730	+		28235	16228	19086	19157	28608	28608					-0.010928192839628537
NKRHGLHHG	9	Unmodified	_NKRHGLHHG_					0	0	0			REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2840576171875	2	528.283923	1054.55329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.221	1	11.221	10.721	11.721	0								0	0	0	0.40728	1	2253	2253		8.2313	0	1		+		28236	21588	19087	19158	28609	28609					0.028198679230627022
NKRSPQAL	8	Unmodified	_NKRSPQAL_					0	0	0			REV__PTPN6|p.R30Q|1|0.13|ENSG00000111679|chr12:6951689-6951689|G/A|missense_variant	REV__PTPN6|p.R30Q|1|0.13|ENSG00000111679|chr12:6951689-6951689|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2647705078125	2	457.264333	912.514114	0.22984	0.0001051	0.4741	0.00021679	0.70394	0.00032189	457.2644400931329	47.322	0.55339	47.322	46.918	47.471	0					54	34	2	0	0	0	0.72381	1	15795	15795		30.504	4.9296	1	66170	+		28237	21427	19088	19159	28610	28610					0.054357228488470355
NKRVELNK	8	Unmodified	_NKRVELNK_					0	0	0			REV__ENSG00000185149|ENST00000329476|NPY2R	REV__ENSG00000185149|ENST00000329476|NPY2R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7993469238281	2	500.79854	999.582528	3.4586	0.0017321	-2.2815	-0.0011426	1.1771	0.0005895	500.79718553855923	19.815	0.097109	19.815	19.763	19.86	0					5	3	2	0	0	0	0.42778	1	5443	5443		56.721	10.769	1	61416	+		28238	17011	19089	19160	28611	28611					0.08271967428709104
NKRVRAGF	8	Unmodified	_NKRVRAGF_					0	0	0			REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.28045654296875	2	474.280318	946.546083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.397	1	44.397	43.897	44.897	0								0	0	0	1.7419	1	17289	17289		28.254	2.6802	1		+		28239	16814	19090	19161	28612	28612					0.07067135322654394
NKSFGHLNK	9	Unmodified	_NKSFGHLNK_					0	0	0			REV__FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	REV__FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7833251953125	2	522.78289	1043.55123	1.7975	0.00093972	-1.9409	-0.0010146	-0.14332	-7.4924E-05	522.782029484374	40.171	0.24297	40.171	40.079	40.322	0					12	9	2	0	0	0	0.21263	1	15831	15831		60.118	1.8883	1	73659	+		28240	20656	19091	19162	28613	28613					0.031193943946163927
NKSIAQGIIT	10	Unmodified	_NKSIAQGIIT_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1;TET1|p.N1409Tfs*2|1|0.24|ENSG00000138336|chr10:68646950-68646950|A/-|frameshift_variant	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8057861328125	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.202	1	39.202	38.702	39.702	0								0	0	0	0.37293	1	13989	13989		38.754	0.94209	1				28241	4246	19092	19163	28614	28614					0.07745414506052839
NKSKKESKP	9	Unmodified	_NKSKKESKP_					0	0	0			REV__RNF168|p.T509Nfs*11|1|0.1|ENSG00000163961|chr3:196472011-196472012|-/G|frameshift_variant	REV__RNF168|p.T509Nfs*11|1|0.1|ENSG00000163961|chr3:196472011-196472012|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3059692382812	2	523.303655	1044.59276	3.416	0.0017876	1.2943	0.00067734	4.7103	0.0024649	523.3042191746134	39.483	0.68377	39.483	39.273	39.957	0					54	15	4	0	0	0	0.47473	1	15606	15606		35.152	0.97948	1	1472900	+		28242	15943	19093	19164	28615	28615					0.07224530363305348
NKSRDVSF	8	Unmodified	_NKSRDVSF_					0	0	0			REV__TLR1|p.L28S|1|0.04|ENSG00000174125|chr4:38798749-38798749|A/G|missense_variant	REV__TLR1|p.L28S|1|0.04|ENSG00000174125|chr4:38798749-38798749|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7476501464844	2	476.745973	951.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.205	1	36.205	35.705	36.705	0								0	0	0	1.7419	1	14048	14048		37.159	0	1		+		28243	21643	19094	19165	28616	28616					-0.0002857376771316922
NKSSRTSR	8	Unmodified	_NKSSRTSR_					0	0	0			REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF	REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.25396728515625	2	468.254497	934.494441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.599	1	38.599	38.099	39.099	0								0	0	0	1.7419	1	14675	14675		34.173	0.65696	1		+		28244	15263	19095	19166	28617	28617					0.024573468380935992
NKTIETVV	8	Unmodified	_NKTIETVV_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2454833984375	2	452.260925	902.507297	-0.11479	-5.1916E-05	-0.54063	-0.00024451	-0.65543	-0.00029642	452.2606190474925	27.481	0.41354	27.481	27.22	27.634	0					19	8	3	0	0	0	0.75243	1	9880	9880		26.796	3.7536	1	887530	+		28245	15558	19096	19167	28618	28618					0.052143651776077604
NKTIKTVE	8	Unmodified	_NKTIKTVE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7762145996094	2	466.7742	931.533846	2.6379	0.0012313	2.3836	0.0011126	5.0215	0.0023439	466.7754526505348	41.886	0.10171	41.886	41.84	41.942	0					6	3	2	0	0	0	0.53424	1	16686	16686		56.721	1.2168	1	102950	+		28246	15602;22247	19097	19168	28619	28619					0.06534054068947626
NKTRPRNR	8	Unmodified	_NKTRPRNR_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2195434570312	2	521.304855	1040.59516	0.76129	0.00039686	-2.8631	-0.0014926	-2.1018	-0.0010957	521.304210075378	26.897	0.17636	26.897	26.767	26.943	0					15	6	4	0	0	0	0.65276	1	8215	8215		40.573	5.3719	1	135900			28247	1942	19098	19169	28620	28620					0.0764842361159026
NKTYMGRR	8	Unmodified	_NKTYMGRR_					0	0	0			REV__ENST00000377989.8_2_6:25138607-25138802:-|nuORF	REV__ENST00000377989.8_2_6:25138607-25138802:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2669677734375	2	513.269093	1024.52363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.665	1	35.665	35.165	36.165	0								0	0	0	1.7419	1	12720	12720		29.15	6.5699	1		+		28248	18739	19099	19170	28621	28621					0.012351678627283036
NKVDNPEA	8	Unmodified	_NKVDNPEA_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant;MGA|p.R614Efs*7|1|0.35|ENSG00000174197|chr15:41696846-41696846|A/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2177734375	2	443.716882	885.41921	-1.1592	-0.00051437	1.0002	0.00044382	-0.15901	-7.0556E-05	443.7174684918458	18.943	0.23781	18.943	18.827	19.065	0					10	7	2	0	0	0	0.69548	1	5051	5051		34.173	8.5985	1	79646			28249	6474	19100	19171	28622	28622					-0.02808255413003735
NKVDSITLK	9	Unmodified	_NKVDSITLK_					0	0	0			REV__tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1	REV__tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3000793457031	2	509.300581	1016.58661	-0.51043	-0.00025996	-0.89626	-0.00045646	-1.4067	-0.00071643	509.30048965460674	26.39	0.10364	26.39	26.313	26.416	0					8	3	3	0	0	0	0.33044	1	8297	8297		47.657	3.2801	1	67125	+		28250	22172	19101	19172	28623	28623					0.07898012131761334
NKVELVPTSV	10	Unmodified	_NKVELVPTSV_					0	0	0			REV__ENSG00000164483|ENST00000439090|SAMD3	REV__ENSG00000164483|ENST00000439090|SAMD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.31396484375	2	543.313689	1084.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.249	1	50.249	49.749	50.749	0								0	0	0	0.34115	1	15127	15127		44.377	2.9506	1		+		28251	15990	19102	19173	28624	28624					0.07390281303219126
NKVKKYDL	8	Unmodified	_NKVKKYDL_					0	0	0			REV__ENST00000566430.2_1_16:68349882-68355449:+|nuORF	REV__ENST00000566430.2_1_16:68349882-68355449:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.835	1	23.835	23.335	24.335	0								0	0	0	1.7419	1	8266	8266		23.042	5.5745	1		+		28252	20344	19103	19174	28625	28625					0.0781033333993264
NKVNVADIL	9	Unmodified	_NKVNVADIL_					0	0	0		ANK2|p.D706N|1|0.26|ENSG00000145362|chr4:113287641-113287641|G/A|missense_variant	ANK2|p.D706N|1|0.26|ENSG00000145362|chr4:113287641-113287641|G/A|missense_variant	ANK2|p.D706N|1|0.26|ENSG00000145362|chr4:113287641-113287641|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2872314453125	2	493.287474	984.560395	-0.74518	-0.00036759	0.66277	0.00032694	-0.082406	-4.065E-05	493.2876707246347	32.671	0.2515	32.671	32.582	32.834	0					12	6	3	0	0	0	0.47038	1	12444	12444		35.618	0	1	219170			28253	147	19104	19175	28626	28626					0.06749742960278127
NKVRQPFR	8	Unmodified	_NKVRQPFR_					0	0	0			REV__ENSG00000129038|ENST00000261921|LOXL1	REV__ENSG00000129038|ENST00000261921|LOXL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.8065185546875	2	522.8067	1043.59885	0.44033	0.00023021	-1.6431	-0.000859	-1.2027	-0.00062879	522.8059903434267	29.408	0.134	29.408	29.357	29.491	0					7	5	2	0	0	0	0.68432	1	9580	9580		33.516	0.76505	1	55809	+		28254	14537	19105	19176	28627	28627					0.0787909338546342
NKVVTIGVSG	10	Unmodified	_NKVVTIGVSG_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.1940612792969	3	325.194075	972.560395	0.53295	0.00017331	-0.040645	-1.3217E-05	0.49231	0.0001601	325.1938734488519	22.205	0.3246	22.205	22.106	22.43	0					20	7	5	0	0	0	0.47859	1	7182	7182		36.318	0	1	3983800	+		28255	22138	19106	19177	28628	28628					0.07301742960305546
NKYVNRHTF	9	Unmodified	_NKYVNRHTF_					0	0	0			REV__PRDM5|p.A386T|1|0.21|ENSG00000138738|chr4:120798299-120798299|C/T|missense_variant	REV__PRDM5|p.A386T|1|0.21|ENSG00000138738|chr4:120798299-120798299|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.54022216796875	3	393.540357	1177.59924	0.89098	0.00035064	-1.4861	-0.00058482	-0.59507	-0.00023419	393.53964060592915	22.216	0.99024	22.216	21.99	22.98	0					31	21	3	0	0	0	0.4966	1	7191	7191		32.812	0.061884	1	663820	+		28256	21412	19107	19178	28629	28629					0.01754468314652513
NLAAMVWRRLL	11	Unmodified	_NLAAMVWRRLL_					0	0	0		ENSG00000111412|ENST00000261318|SPRING1	ENSG00000111412|ENST00000261318|SPRING1	ENSG00000111412|ENST00000261318|SPRING1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	671.8938598632812	2	671.892449	1341.77035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.828	1	19.828	19.328	20.328	0								0	0	0	0.43372	1	6333	6333		19.997	3.2794	1				28257	2667	19108	19179	28630	28630					0.11313082361630222
NLAEAQQKL	9	Unmodified	_NLAEAQQKL_					0	0	0		ENST00000479095.1_1_9:4679767-4685161:+|nuORF;CDC37L1|p.A316Yfs*10|1|0.05|ENSG00000106993|chr9:4706041-4706042|-/CATACATATATATT|frameshift_variant;ENSG00000106993|ENST00000381854|CDC37L1	ENST00000479095.1_1_9:4679767-4685161:+|nuORF	ENST00000479095.1_1_9:4679767-4685161:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.7826843261719	2	507.782556	1013.55056	0.87919	0.00044644	-0.58907	-0.00029912	0.29012	0.00014732	507.78233336440525	20.372	0.10736	20.372	20.31	20.417	0					5	3	2	0	0	0	0.13726	1	5455	5455		70.816	0	1	35273			28258	438	19109	19180	28631	28631					0.04432554954905754
NLAHVEKVE	9	Unmodified	_NLAHVEKVE_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5;ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.8010864257812	2	519.782556	1037.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.425	1	21.425	20.925	21.925	0								0	0	0	0.30504	1	7103	7103		34.173	1.3601	1				28259	90	19110	19181	28632	28632					0.0332855495489639
NLAQSSRLK	9	Unmodified	_NLAQSSRLK_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-2|KIF27;REV__ENST00000422653.1_1_9:88371036-88385349:+|nuORF	REV__nc|ENSG00000165115|Q86VH2-2|KIF27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7945251464844	2	508.795998	1015.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.903	1	35.903	35.403	36.403	0								0	0	0	0.30504	1	12152	12152		34.173	2.2177	1		+		28260	16022;19090	19111	19182	28633	28633					0.07027663566100273
NLASKNKLAS	10	Unmodified	_NLASKNKLAS_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3038330078125	2	523.303655	1044.59276	1.7929	0.00093825	-0.44109	-0.00023082	1.3518	0.00070742	523.3033414963174	50.387	1.1313	50.387	50.125	51.256	0					104	69	2	0	0	0	0.63224	1	18850	18850		30.318	3.6248	1	129440			28261	11500	19112	19183	28634	28634					0.07224530363282611
NLCFSLGHV	9	Unmodified	_NLCFSLGHV_					0	0	0		PLXNB1|p.R1469C|1|0.5|ENSG00000164050|chr3:48413800-48413800|G/A|missense_variant	PLXNB1|p.R1469C|1|0.5|ENSG00000164050|chr3:48413800-48413800|G/A|missense_variant	PLXNB1|p.R1469C|1|0.5|ENSG00000164050|chr3:48413800-48413800|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.50054931640625	3	330.500622	988.480036	0.54488	0.00018008	-1.1166	-0.00036905	-0.57175	-0.00018896	330.50033482417524	22.785	0.16774	22.785	22.677	22.845	0					8	3	3	0	0	0	0.55282	1	7774	7774		19.997	0	1	358150			28262	11945	19113	19184	28635	28635					-0.014664416343975972
NLCLIPYMQ	9	Unmodified	_NLCLIPYMQ_					0	0	0		L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|40|3|sense	L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|40|3|sense	L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|40|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.770751953125	2	547.772288	1093.53002	-0.27902	-0.00015284	-1.1369	-0.00062279	-1.416	-0.00077563	547.770783126672	35.443	0.090672	35.443	35.361	35.452	0					6	4	2	0	0	0	0.5879	1	11984	11984		23.042	2.0956	1	45210			28263	11272	19114	19185	28636	28636					-0.013000750207766032
NLDLVKID	8	Unmodified	_NLDLVKID_					0	0	0			REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2683410644531	2	465.26875	928.522947	-2.315	-0.0010771	0.76846	0.00035754	-1.5465	-0.00071954	465.2694454953348	22.948	0.22403	22.948	22.855	23.079	0					8	5	2	0	0	0	0.37144	1	6928	6928		74.255	10.048	1	294450	+		28264	16036	19115	19186	28637	28637					0.055826516946467564
NLDQFDGLK	9	Unmodified	_NLDQFDGLK_					0	0	0			REV__TFCP2L1|p.Q427Sfs*18|1|0.32|ENSG00000115112|chr2:121231888-121231888|G/-|frameshift_variant	REV__TFCP2L1|p.Q427Sfs*18|1|0.32|ENSG00000115112|chr2:121231888-121231888|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2673950195312	2	525.266739	1048.51892	-1.2446	-0.00065377	1.7372	0.00091247	0.49253	0.00025871	525.7690743625839	24.869	0.2412	24.869	24.758	24.999	0					9	5	2	0	0	0	0.30841	1	7871	7871		49.536	5.1589	1	248630	+		28265	14097	19116	19187	28638	28638					-0.00339437799038933
NLEELFQVK	9	Unmodified	_NLEELFQVK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.3071899414062	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.89	1	41.89	41.39	42.39	0								0	0	0	0.34598	1	13864	13864		25.574	2.5316	1				28266	3565	19117	19188	28639	28639					0.04261994786179457
NLEKFLIN	8	Unmodified	_NLEKFLIN_					0	0	0		tr|U7STL4|U7STL4_FUSNUDUF452domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01103PE=4SV=1	tr|U7STL4|U7STL4_FUSNUDUF452domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01103PE=4SV=1	tr|U7STL4|U7STL4_FUSNUDUF452domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01103PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7833557128906	2	495.784567	989.554582	-0.38165	-0.00018922	-0.17726	-8.7882E-05	-0.55891	-0.0002771	495.7843350147313	37.647	0.18819	37.647	37.517	37.705	0					10	5	2	0	0	0	0.58478	1	14290	14290		41.427	0	1	73198			28267	22786	19118	19189	28640	28640					0.0593864444861083
NLEPFLKR	8	Unmodified	_NLEPFLKR_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7991638183594	2	508.798009	1015.58147	2.9908	0.0015217	-0.81931	-0.00041686	2.1715	0.0011048	508.7977665199183	38.776	0.20839	38.776	38.712	38.92	0					11	4	3	0	0	0	0.3049	1	15282	15282		82.241	5.4664	1	259040			28268	6237	19119	19190	28641	28641					0.07429753059807354
NLFDKGILA	9	Unmodified	_NLFDKGILA_					0	0	0		nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF;DNAH1|p.K1480Sfs*13|1|0.07|ENSG00000114841|chr3:52359941-52359941|G/-|frameshift_variant	nc|ENSG00000114841|Q9P2D7-6|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7845458984375	2	495.784567	989.554582	0.94809	0.00047005	-1.0453	-0.00051823	-0.097176	-4.8178E-05	495.78402178581956	38.585	0.26588	38.585	38.48	38.746	0					14	5	3	0	0	0	0.15558	1	15192	15192		60.118	5.3419	1	963220			28269	2867	19120	19191	28642	28642					0.0593864444861083
NLFVSLGKSR	10	Unmodified	_NLFVSLGKSR_					0	0	0			REV__ENST00000478451.1_1_7:23312974-23313840:+|nuORF	REV__ENST00000478451.1_1_7:23312974-23313840:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.8277587890625	2	560.827298	1119.64004	1.2786	0.00071709	-0.51472	-0.00028867	0.76391	0.00042842	560.8272365781885	31.147	0.22927	31.147	31.086	31.316	0					19	9	4	0	0	0	0.56931	1	9993	9993		37.812	0.78304	1	341950	+		28270	14855	19121	19192	28643	28643					0.08500809634278994
NLGMVLLGLK	10	Unmodified	_NLGMVLLGLK_					0	0	0		FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant;FANCB|p.I419Tfs*9|1|0.08|ENSG00000181544|chrX:14853109-14853110|-/AG|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB	FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant	FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3259887695312	2	529.325545	1056.63654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.694	1	34.694	34.194	35.194	0								0	0	0	0.41253	1	11356	11356		26.693	1.2427	1				28271	6855	19122	19193	28644	28644					0.11048423536067276
NLGRSEIERI	10	Unmodified	_NLGRSEIERI_					0	0	0			REV__ENST00000491801.1_1_2:175676203-175677076:-|nuORF	REV__ENST00000491801.1_1_2:175676203-175677076:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	593.8309326171875	2	593.830569	1185.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.007	1	27.007	26.507	27.507	0								0	0	0	0.4201	1	8778	8778		23.523	1.8369	1		+		28272	14522	19123	19194	28645	28645					0.061187027950154516
NLGVVKSAV	9	Unmodified	_NLGVVKSAV_					0	0	0		ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7713928222656	2	443.77146	885.528367	-0.36184	-0.00016058	-0.16495	-7.3201E-05	-0.52679	-0.00023378	443.77136325544427	41.753	0.25439	41.753	41.653	41.907	0					18	12	2	0	0	0	0.41113	1	15838	15838		40.778	0.20554	1	153410			28273	7762	19124	19195	28646	28646					0.08102375277144347
NLHLVLID	8	Unmodified	_NLHLVLID_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7791442871094	2	468.779285	935.544017	-2.1575	-0.0010114	2.1279	0.00099753	-0.029587	-1.387E-05	468.7801767041083	27.67	0.74206	27.67	27.361	28.103	0					20	18	2	0	0	0	0.70055	1	9102	9102		33.516	0	1	76629			28274	3727	19125	19196	28647	28647					0.07366661794185347
NLHMTSSLA	9	Unmodified	_NLHMTSSLA_					0	0	0		ENST00000558270.1_1_15:41272423-41275357:-|nuORF;ENSG00000128908|ENST00000648947|INO80	ENST00000558270.1_1_15:41272423-41275357:-|nuORF	ENST00000558270.1_1_15:41272423-41275357:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.24188232421875	2	487.242209	972.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.242	1	19.242	18.742	19.742	0								0	0	0	0.24724	1	5175	5175		44.117	1.7207	1				28275	3569	19126	19197	28648	28648					-0.01747049359630637
NLISAATGV	9	Unmodified	_NLISAATGV_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.23992919921875	2	423.239993	844.465432	-0.35081	-0.00014848	0.19716	8.3446E-05	-0.15365	-6.5033E-05	423.2401010223416	22.747	0.16725	22.747	22.638	22.805	0					6	3	2	0	0	0	0.30951	1	7627	7627		49.442	1.7842	1	200330			28276	2254	19127	19198	28649	28649					0.03697809489096926
NLISNKRKE	9	Unmodified	_NLISNKRKE_					0	0	0			REV__CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	REV__CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.32275390625	2	551.32238	1100.63021	1.6449	0.00090685	-0.3651	-0.00020129	1.2798	0.00070556	551.3220181407778	22.31	0.65985	22.31	21.858	22.518	0					17	13	3	0	0	0	0.30841	1	7546	7546		49.536	4.5138	1	862300	+		28277	12448	19128	19199	28650	28650					0.08391621628902612
NLKGVVYTTQ	10	Unmodified	_NLKGVVYTTQ_					0	0	0		HMCN1|p.R5595Q|1|0.2|ENSG00000143341|chr1:186189754-186189754|G/A|missense_variant	HMCN1|p.R5595Q|1|0.2|ENSG00000143341|chr1:186189754-186189754|G/A|missense_variant	HMCN1|p.R5595Q|1|0.2|ENSG00000143341|chr1:186189754-186189754|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.8103637695312	2	561.811313	1121.60807	-0.94169	-0.00052905	-0.1184	-6.6519E-05	-1.0601	-0.00059557	561.8111247336652	15.202	0.15517	15.202	15.149	15.304	0					10	5	3	0	0	0	0.34667	1	3354	3354		62.107	0	1	401210			28278	11210	19129	19200	28651	28651					0.05213397160468958
NLKNDLNEK	9	Unmodified	_NLKNDLNEK_					0	0	0		tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.1977844238281	3	363.196256	1086.56694	3.1287	0.0011363	0.55948	0.0002032	3.6882	0.0013395	363.1965448691384	23.31	0.16667	23.31	23.252	23.418	0					5	3	2	0	0	0	0.17854	1	7900	7900		61.691	0	1	502810			28279	22658	19130	19201	28652	28652					0.027116361209891693
NLKRAKESI	9	Unmodified	_NLKRAKESI_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8213500976562	2	529.819473	1057.62439	0.11443	6.0626E-05	-1.2809	-0.00067866	-1.1665	-0.00061803	530.3187291367925	38.514	0.252	38.514	38.305	38.557	0					10	8	2	0	0	0	0.51817	1	14637	14637		30.504	0	1	64415			28280	2640	19131	19202	28653	28653					0.09788523117231307
NLKVFSPYH	9	Unmodified	_NLKVFSPYH_					0	0	0			REV__sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	REV__sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.799072265625	2	552.795466	1103.57638	0.2264	0.00012516	4.1116	0.0022729	4.338	0.002398	552.7980234830611	36.152	0.16143	36.152	36.047	36.208	0					8	6	2	0	0	0	0.30841	1	12244	12244		42.396	0	1	56508	+		28281	21572	19132	19203	28654	28654					0.028734491971817988
NLKYSSSLAA	10	Unmodified	_NLKYSSSLAA_					0	0	0		ADAD1|p.Y227N|1|0.16|ENSG00000164113|chr4:122396332-122396332|T/A|missense_variant	ADAD1|p.Y227N|1|0.16|ENSG00000164113|chr4:122396332-122396332|T/A|missense_variant	ADAD1|p.Y227N|1|0.16|ENSG00000164113|chr4:122396332-122396332|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.78369140625	2	527.282389	1052.55022	0.57886	0.00030523	-1.798	-0.00094806	-1.2191	-0.00064283	527.2816301839235	16.984	0.10854	16.984	16.903	17.012	0					8	4	2	0	0	0	0.46215	1	3959	3959		49.442	7.0454	1	94256			28282	45	19133	19204	28655	28655					0.026051352350577872
NLLIVQIFQ	9	Unmodified	_NLLIVQIFQ_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.3300170898438	2	544.329142	1086.64373	0.58868	0.00032043	0.59084	0.00032161	1.1795	0.00064204	544.3295351262485	34.815	0.35812	34.815	34.589	34.947	0					15	7	3	0	0	0	0.30951	1	13382	13382		49.442	0	1	116350			28283	11626	19134	19205	28656	28656					0.10387479408132094
NLLMACAKAVA	11	Unmodified	_NLLMACAKAVA_					0	0	0			REV__nc|ENSG00000188316|A6NNW6-4|ENO4	REV__nc|ENSG00000188316|A6NNW6-4|ENO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7986450195312	2	552.798837	1103.58312	0.059319	3.2791E-05	-1.2994	-0.0007183	-1.2401	-0.00068551	552.7978135031709	21.899	0.16275	21.899	21.793	21.955	0					8	3	3	0	0	0	0.2859	1	7344	7344		64.207	2.4427	1	490200	+		28284	12803	19135	19206	28657	28657					0.03547302761876381
NLLRCPSARAP	11	Unmodified	_NLLRCPSARAP_					0	0	0			REV__ENST00000379834.6_1_6:7389749-7389923:+|nuORF	REV__ENST00000379834.6_1_6:7389749-7389923:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.3294067382812	2	599.329682	1196.64481	-0.081377	-4.8772E-05	-0.2588	-0.00015511	-0.34018	-0.00020388	599.3294382357266	41.466	0.86247	41.466	40.938	41.8	0					71	41	2	0	0	0	0.68382	1	15732	15732		29.17	2.1227	1	107490	+		28285	18763	19136	19207	28658	28658					0.05435370505369974
NLLSTHVQG	9	Unmodified	_NLLSTHVQG_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7610778808594	2	484.761623	967.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.291	1	25.291	24.791	25.791	0								0	0	0	0.24544	1	8958	8958		44.377	6.5657	1				28286	251	19137	19208	28659	28659					0.023639992663902376
NLNPVFGGSGP	11	Unmodified	_NLNPVFGGSGP_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7662963867188	2	529.766906	1057.51926	0.28665	0.00015186	-1.9581	-0.0010373	-1.6715	-0.00088549	529.7662179038264	24.559	0.16759	24.559	24.477	24.645	0					7	3	3	0	0	0	0.68382	1	8610	8610		29.17	6.1276	1	290890			28287	4266	19138	19209	28660	28660					-0.007200180791642197
NLPKVVCL	8	Unmodified	_NLPKVVCL_					0	0	0			REV__DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant	REV__DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2671813964844	2	443.264956	884.515359	3.1153	0.0013809	1.4049	0.00062274	4.5201	0.0020036	443.2655570889737	21.337	0.20794	21.337	21.233	21.441	0					10	6	2	0	0	0	0.68754	1	6100	6100		35.201	35.201	1	76154	+		28288	12740	19139	19210	28661	28661					0.06848220893402868
NLQEIIEK	8	Unmodified	_NLQEIIEK_					0	0	0		ENST00000562945.2_1_16:34428496-34428757:-|nuORF	ENST00000562945.2_1_16:34428496-34428757:-|nuORF	ENST00000562945.2_1_16:34428496-34428757:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7791748046875	2	493.779482	985.544411	-0.085364	-4.2151E-05	-0.023807	-1.1756E-05	-0.10917	-5.3906E-05	493.7795242082496	26.825	0.75954	26.825	26.623	27.383	0					45	27	3	0	0	0	0.6088	1	8299	8299		47.657	0	1	83456			28289	10728	19140	19211	28662	28662					0.05106036723384477
NLQRVEVI	8	Unmodified	_NLQRVEVI_					0	0	0		ENST00000540401.5_1_12:28421609-28702103:+|nuORF	ENST00000540401.5_1_12:28421609-28702103:+|nuORF	ENST00000540401.5_1_12:28421609-28702103:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.78704833984375	2	485.787641	969.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.616	1	35.616	35.116	36.116	0								0	0	0	1.7419	1	13369	13369		60.294	2.4827	1				28290	10531	19141	19212	28663	28663					0.07473162680150836
NLRGGTNIIK	10	Unmodified	_NLRGGTNIIK_					0	0	0		ENST00000562367.1_1_16:58208309-58230657:-|nuORF;ENSG00000070770|ENST00000262506|CSNK2A2	ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENST00000562367.1_1_16:58208309-58230657:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3256225585938	2	543.324922	1084.63529	0.60977	0.0003313	-0.32739	-0.00017788	0.28238	0.00015342	543.3249829660464	30.253	0.26042	30.253	30.099	30.359	0					12	5	3	0	0	0	0.46989	1	11167	11167		52.937	21.407	1	212750			28291	1458	19142	19213	28664	28664					0.09635925491488706
NLRGHVPA	8	Unmodified	_NLRGHVPA_					0	0	0		ENSG00000173261|ENST00000311450|PLAC8L1	ENSG00000173261|ENST00000311450|PLAC8L1	ENSG00000173261|ENST00000311450|PLAC8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2449951171875	2	432.245944	862.477334	-0.79235	-0.00034249	-1.0817	-0.00046757	-1.8741	-0.00081006	432.2453313571768	23.704	0.16339	23.704	23.642	23.805	0					7	5	2	0	0	0	0.79293	1	7169	7169		15.636	15.636	1	65393			28292	6417	19143	19214	28665	28665					0.040594710229470365
NLRGSPGPK	9	Unmodified	_NLRGSPGPK_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1;COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant;COL17A1|p.P1229Rfs*22|1|0.39|ENSG00000065618|chr10:104034701-104034701|G/-|frameshift_variant;ENST00000480127.1_1_10:105815115-105815723:-|nuORF	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2643127441406	2	463.264333	924.514114	-0.14389	-6.6661E-05	-0.7204	-0.00033374	-0.86429	-0.0004004	463.26434924727766	14.757	0.26614	14.757	14.596	14.862	0					11	5	3	0	0	0	0.27249	1	3886	3886		52.937	3.4952	1	209610			28293	1377	19144	19215	28666	28666					0.04883722848853722
NLSAQDHQTF	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))NLSAQDHQTF_					1	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;ENSG00000007341|ENST00000358039|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-2|ST7L;ST7L|p.A541Cfs*2|1|0.05|ENSG00000007341|chr1:112541959-112541960|-/A|frameshift_variant;nc|ENSG00000007341|Q8TDW4-6|ST7L;ENST00000497235.5_1_1:113125066-113140698:-|nuORF;nc|ENSG00000004866|Q9NRC1-6|ST7;ST7L|p.M420Ifs*18|1|0.1|ENSG00000007341|chr1:112556004-112556005|-/CAAAAGT|frameshift_variant;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;nc|ENSG00000007341|Q8TDW4-4|ST7L;nc|ENSG00000007341|Q8TDW4-8|ST7L;ENST00000489293.5_1_7:116770554-116838385:+|nuORF;ENST00000497457.5_1_1:113121036-113161548:-|nuORF;ENST00000480988.5_1_1:113119662-113161548:-|nuORF;ENST00000479436.5_1_1:113134145-113161558:-|nuORF;nc|ENSG00000004866|Q9NRC1-5|ST7	nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.7774658203125	2	601.775459	1201.53637	3.0853	0.0018567	0.25142	0.0001513	3.3367	0.002008	601.7755762981881	37.335	0.59974	37.335	37.187	37.787	0					25	12	3	0	0	0	0.16018	1	14577	14577		84.916	8.1414	1	657960			28294	947	19145	19216	28667	28667					-0.05634142264034381
NLSGGLMSCGL	11	Oxidation (M)	_NLSGGLM(Oxidation (M))SCGL_		NLSGGLM(1)SCGL		NLSGGLM(51)SCGL	0	0	1			REV__ENST00000515762.5_1_5:10442078-10461472:+|nuORF	REV__ENST00000515762.5_1_5:10442078-10461472:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.24755859375	2	534.246634	1066.47872	-0.52532	-0.00028065	1.1065	0.00059115	0.58119	0.0003105	534.2474542429934	15.415	0.14618	15.415	15.348	15.494	0					8	5	2	0	0	0	0.40479	1	3507	3507		51.193	7.0759	1	120270	+		28295	15275	19146	19217	28668	28668		586			-0.05186443785487427
NLSGIPIWGI	10	Unmodified	_NLSGIPIWGI_					0	0	0			REV__NEB|p.D1212N|1|0.3|ENSG00000183091|chr2:151677705-151677705|C/T|missense_variant	REV__NEB|p.D1212N|1|0.3|ENSG00000183091|chr2:151677705-151677705|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.3074340820312	2	535.305667	1068.59678	3.3661	0.0018019	-2.9545	-0.0015816	0.41157	0.00022032	535.3046652295499	34.295	0.59966	34.295	34.021	34.62	0					27	12	3	0	0	0	0.41335	1	13134	13134		54.776	5.3348	1	356270	+		28296	21280	19147	19218	28669	28669					0.06522619856991696
NLSHSQSL	8	Unmodified	_NLSHSQSL_					0	0	0		ENST00000276055.3_1_X:46457237-46457324:+|nuORF	ENST00000276055.3_1_X:46457237-46457324:+|nuORF	ENST00000276055.3_1_X:46457237-46457324:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2243957519531	2	443.224874	884.435195	-0.35286	-0.0001564	-0.48454	-0.00021476	-0.8374	-0.00037116	443.22461326723476	19.478	0.22659	19.478	19.389	19.616	0					9	5	3	0	0	0	0.35045	1	5890	5890		76.774	2.7994	1	459230			28297	8396	19148	19219	28670	28670					-0.011645491760759796
NLSHSQSL	8	Unmodified	_NLSHSQSL_					0	0	0		ENST00000276055.3_1_X:46457237-46457324:+|nuORF	ENST00000276055.3_1_X:46457237-46457324:+|nuORF	ENST00000276055.3_1_X:46457237-46457324:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.22467041015625	2	443.224874	884.435195	-1.154	-0.00051147	1.5258	0.00067625	0.37178	0.00016478	443.22535685504363	19.157	0.10586	19.157	19.086	19.192	0					7	3	3	0	0	0	0.46013	1	5133	5133		64.207	8.7031	1	133870			28298	8396	19148	19219	28671	28671					-0.011645491760759796
NLSIDGKIL	9	Unmodified	_NLSIDGKIL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-6|USP48;ENST00000464577.1_1_1:22013654-22030763:-|nuORF	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7898864746094	2	486.78985	971.565146	-0.31736	-0.00015449	0.40858	0.00019889	0.091222	4.4406E-05	486.7897584080956	37.543	0.41725	37.543	37.349	37.767	0					24	12	3	0	0	0	0.41113	1	14179	14179		40.778	0	1	482080			28299	1841	19149	19220	28672	28672					0.07822627103064406
NLTNGRRPA	9	Unmodified	_NLTNGRRPA_					0	0	0			REV__ENSG00000143919|ENST00000378494|CAMKMT	REV__ENSG00000143919|ENST00000378494|CAMKMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7758483886719	2	499.778139	997.541725	-1.035	-0.00051727	-2.5848	-0.0012918	-3.6198	-0.0018091	499.77659805496296	24.314	1.0466	24.314	24.15	25.196	0					79	34	3	0	0	0	0.54267	1	7556	7556		27.882	3.6795	1	585550	+		28300	15216	19150	19221	28673	28673					0.04285626109083296
NLVAGRLAE	9	Unmodified	_NLVAGRLAE_					0	0	0			REV__ENST00000480686.5_1_1:45110332-45115698:+|nuORF	REV__ENST00000480686.5_1_1:45110332-45115698:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7716064453125	2	471.771991	941.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.212	1	21.212	20.712	21.712	0								0	0	0	0.35507	1	6108	6108		24.203	2.2429	1		+		28301	17114	19151	19222	28674	28674					0.056325896460293734
NLVFPGIAVSK	11	Unmodified	_NLVFPGIAVSK_					0	0	0		ENST00000593450.1_1_19:22646763-22647404:+|nuORF	ENST00000593450.1_1_19:22646763-22647404:+|nuORF	ENST00000593450.1_1_19:22646763-22647404:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.8434448242188	2	572.839874	1143.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.887	1	13.887	13.387	14.387	0								0	0	0	0.38772	1	3263	3263		23.523	0	1				28302	10985	19152	19223	28675	28675					0.09910864436847078
NLVNVWEV	8	Unmodified	_NLVNVWEV_					0	0	0			REV__ENSG00000107679|ENST00000368990|PLEKHA1	REV__ENSG00000107679|ENST00000368990|PLEKHA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.76092529296875	2	486.761092	971.507631	0.70232	0.00034186	-1.0675	-0.00051962	-0.36519	-0.00017776	486.76071801944795	29.975	0.12704	29.975	29.895	30.022	0					6	3	2	0	0	0	0.5676	1	10772	10772		53.351	3.9099	1	196230	+		28303	13859	19153	19224	28676	28676					0.020737848974818007
NLVPTVPVPL	10	Unmodified	_NLVPTVPVPL_					0	0	0		ZHX2|p.K257T|1|0.37|ENSG00000178764|chr8:122952280-122952280|A/C|missense_variant	ZHX2|p.K257T|1|0.37|ENSG00000178764|chr8:122952280-122952280|A/C|missense_variant	ZHX2|p.K257T|1|0.37|ENSG00000178764|chr8:122952280-122952280|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.21820068359375	3	350.21822	1047.63283	0.51008	0.00017864	-0.66281	-0.00023213	-0.15272	-5.3487E-05	350.21796398247386	31.985	0.29654	31.985	31.878	32.174	0					17	6	4	0	0	0	0.51121	1	12101	12101		40.058	16.68	1	821550			28304	23142	19154	19225	28677	28677					0.11092077033868009
NLVQEWLAK	9	Unmodified	_NLVQEWLAK_					0	0	0		ENSG00000163295|ENST00000295463|ALPI;ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP	ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.8073120117188	2	550.808574	1099.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.364	1	26.364	25.864	26.864	0								0	0	0	0.3063	1	8282	8282		14.137	0	1				28305	5542	19155	19226	28678	28678					0.05677718368656315
NLVQWKSA	8	Unmodified	_NLVQWKSA_					0	0	0			REV__nc|ENSG00000146857|Q7Z7C7|STRA8	REV__nc|ENSG00000146857|Q7Z7C7|STRA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.259033203125	2	473.261259	944.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.931	1	31.931	31.431	32.431	0								0	0	0	1.7419	1	10290	10290		38.806	3.1879	1		+		28306	15322	19156	19227	28679	28679					0.03349204617336454
NLWMEILYLK	10	Unmodified	_NLWMEILYLK_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	662.3653564453125	2	661.862492	1321.71043	2.6572	0.0017587	-0.76923	-0.00050913	1.8879	0.0012496	661.861991434772	41.117	0.26649	41.117	41.002	41.269	0					15	6	3	0	0	0	0.49411	1	16316	16316		45.972	5.1941	1	285390			28307	2992	19157	19228	28680	28680					0.06244346907737963
NLWYKNLK	8	Unmodified	_NLWYKNLK_					0	0	0		ENST00000432358.1_1_6:158703326-158703404:+|nuORF	ENST00000432358.1_1_6:158703326-158703404:+|nuORF	ENST00000432358.1_1_6:158703326-158703404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8060913085938	2	539.805834	1077.59712	0.26456	0.00014281	0.61606	0.00033256	0.88062	0.00047536	540.3074979096667	46.165	0.26087	46.165	46.038	46.299	0					31	16	3	0	0	0	0.73426	1	17081	17081		19.36	0	1	142810			28308	9508	19158	19229	28681	28681					0.061420395768209346
NLYIISVK	8	Unmodified	_NLYIISVK_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.288818359375	2	475.289485	948.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.218	1	40.218	39.718	40.718	0								0	0	0	1.7419	1	15952	15952		32.812	4.9302	1				28309	3428	19159	19230	28682	28682					0.08807832453999254
NLYIISVK	8	Unmodified	_NLYIISVK_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2892761230469	2	475.289485	948.564418	0.7351	0.00034938	-1.1196	-0.00053213	-0.3845	-0.00018275	475.28899289326023	40.193	0.13366	40.193	40.134	40.268	0					5	3	2	0	0	0	0.73426	1	15965	15965		29.15	0	1	50530			28310	3428	19159	19230	28683	28683					0.08807832453999254
NLYVPLLKM	9	Oxidation (M)	_NLYVPLLKM(Oxidation (M))_		NLYVPLLKM(1)		NLYVPLLKM(53)	0	0	1			REV__nc|ENSG00000176986|P53992-2|SEC24C	REV__nc|ENSG00000176986|P53992-2|SEC24C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.8196411132812	2	553.817553	1105.62055	3.6186	0.002004	0.19299	0.00010688	3.8116	0.0021109	553.8176346188194	17.809	0.21486	17.809	17.7	17.915	0					14	4	5	0	0	0	0.26904	1	5217	5217		53.351	53.351	1	2207500	+		28311	16682	19160	19231	28684	28684		637			0.07196717299166266
NLYYLEEAH	9	Unmodified	_NLYYLEEAH_					0	0	0			REV__nc|ENSG00000168077|Q6AZY7-2|SCARA3	REV__nc|ENSG00000168077|Q6AZY7-2|SCARA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.2706298828125	2	576.272021	1150.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.817	1	23.817	23.317	24.317	0								0	0	0	0.34845	1	8257	8257		25.574	5.5773	1		+		28312	16239	19161	19232	28685	28685					-0.03975455144609441
NMATFQPQ	8	Unmodified	_NMATFQPQ_					0	0	0			REV__LPAR1|p.F267Lfs*14|1|0.27|ENSG00000198121|chr9:110875715-110875715|A/-|frameshift_variant	REV__LPAR1|p.F267Lfs*14|1|0.27|ENSG00000198121|chr9:110875715-110875715|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7142028808594	2	468.715827	935.417102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.919	1	30.919	30.419	31.419	0								0	0	0	1.7419	1	10201	10201		55.504	5.4797	1		+		28313	17382	19162	19233	28686	28686					-0.053190074224630735
NMDGPLPATPA	11	Unmodified	_NMDGPLPATPA_					0	0	0			REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.8139038085938	2	542.260599	1082.50665	1.0638	0.00057688	-0.53476	-0.00028998	0.52909	0.00028691	542.2604154397449	25.389	0.49828	25.389	25.252	25.75	0					27	12	4	0	0	0	0.51875	1	8165	8165		42.864	7.246	1	3579900	+		28314	21578	19163	19234	28687	28687					-0.03130797533731311
NMEKATLP	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))NMEKATLP_					1	0	0		ADGRB1|p.T950M|1|0.24|ENSG00000181790|chr8:142518169-142518169|C/T|missense_variant;ENST00000518820.1_1_8:143561046-143604069:+|nuORF;ENSG00000181790|ENST00000517894|ADGRB1	ADGRB1|p.T950M|1|0.24|ENSG00000181790|chr8:142518169-142518169|C/T|missense_variant	ADGRB1|p.T950M|1|0.24|ENSG00000181790|chr8:142518169-142518169|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.239990234375	2	473.239135	944.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.588	1	23.588	23.088	24.088	0								0	0	0	1.7419	1	7108	7108		45.952	15.448	1				28315	74	19164	19235	28688	28688					-0.010735675911746512
NMILDNHAL	9	Oxidation (M)	_NM(Oxidation (M))ILDNHAL_		NM(1)ILDNHAL		NM(55)ILDNHAL	0	0	1		DNTT|p.K468N|1|0.31|ENSG00000107447|chr10:96335935-96335935|G/T|missense_variant	DNTT|p.K468N|1|0.31|ENSG00000107447|chr10:96335935-96335935|G/T|missense_variant	DNTT|p.K468N|1|0.31|ENSG00000107447|chr10:96335935-96335935|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.761474609375	2	528.760766	1055.50698	0.10968	5.7997E-05	1.1736	0.00062054	1.2833	0.00067853	528.7615229582946	34.912	0.1543	34.912	34.8	34.954	0					8	4	2	0	0	0	0.25716	1	13055	13055		54.776	6.8607	1	196590			28316	834	19165	19236	28689	28689		39			-0.018553778138993948
NMKSRCTAK	9	Unmodified	_NMKSRCTAK_					0	0	0		ENST00000484697.5_1_1:46871424-46877830:+|nuORF	ENST00000484697.5_1_1:46871424-46877830:+|nuORF	ENST00000484697.5_1_1:46871424-46877830:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7650756835938	2	519.762786	1037.51102	0.60576	0.00031485	3.8192	0.0019851	4.425	0.0022999	519.7647134844777	27.717	0.11824	27.717	27.635	27.753	0					6	3	2	0	0	0	0.40353	1	8583	8583		41.427	2.1738	1	40374			28317	10000	19166	19237	28690	28690					-0.0062361159182273695
NMNDDDGW	8	Unmodified	_NMNDDDGW_					0	0	0		ENST00000545710.1_1_12:9659830-9660388:-|nuORF	ENST00000545710.1_1_12:9659830-9660388:-|nuORF	ENST00000545710.1_1_12:9659830-9660388:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.6635437011719	2	483.666531	965.31851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.433	1	49.433	48.933	49.933	0								0	0	0	1.7419	1	15473	15473		12.959	4.1369	1				28318	10578	19167	19238	28691	28691					-0.1655365545816494
NMQRWKRIRQR	11	Unmodified	_NMQRWKRIRQR_					0	0	0		ENSG00000267796|ENST00000301159|LIN37;ENST00000590890.1_1_19:36244761-36245221:+|nuORF;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000595455.1_1_19:36244761-36245372:+|nuORF	ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.96826171875	3	524.631915	1570.87392	3.4351	0.0018022	0.45895	0.00024078	3.8941	0.0020429	524.6320845673887	19.318	0.1654	19.318	19.212	19.378	0					9	3	4	0	0	0	0.83287	1	5940	5940		8.0344	1.7135	1	965130			28319	8077	19168	19239	28692	28692					0.11131382521989508
NMVDKKEVV	9	Unmodified	_NMVDKKEVV_					0	0	0		tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1	tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1	tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2842407226562	2	531.286617	1060.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.942	1	16.942	16.442	17.442	0								0	0	0	0.23445	1	4122	4122		45.972	0	1				28320	22653	19169	19240	28693	28693					0.03082365880004545
NMVTTEVI	8	Unmodified	_NMVTTEVI_					0	0	0		ENSG00000140543|ENST00000268148|DET1;nc|ENSG00000173867|Q7L5Y6-2|DET1	ENSG00000140543|ENST00000268148|DET1	ENSG00000140543|ENST00000268148|DET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.73162841796875	2	453.733686	905.452819	2.5111	0.0011394	-1.1778	-0.00053441	1.3333	0.00060498	453.73066825778864	34.368	0.84168	34.368	33.876	34.717	0					33	17	3	0	0	0	0.63077	1	13206	13206		44.117	1.7207	1	535780			28321	4394	19170	19241	28694	28694					-0.003689699654614742
NNALFGLDIS	10	Unmodified	_NNALFGLDIS_					0	0	0		ENST00000264260.6_2_2:103039712-103039787:+|nuORF	ENST00000264260.6_2_2:103039712-103039787:+|nuORF	ENST00000264260.6_2_2:103039712-103039787:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2753295898438	2	532.274564	1062.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.414	1	31.414	30.914	31.914	0								0	0	0	0.35368	1	10097	10097		42.396	0.96952	1				28322	8328	19171	19242	28695	28695					0.00580848718004745
NNAPVQILQ	9	Unmodified	_NNAPVQILQ_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7777099609375	2	498.777274	995.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.593	1	21.593	21.093	22.093	0								0	0	0	0.2591	1	6223	6223		42.396	0	1				28323	4962	19172	19243	28696	28696					0.042045723004889624
NNDGNFDV	8	Unmodified	_NNDGNFDV_					0	0	0		CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant;nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1;ENST00000573209.1_1_17:7350169-7350494:+|nuORF;CHRNB1|p.P144Rfs*74|1|0.3|ENSG00000170175|chr17:7447116-7447116|C/-|frameshift_variant	CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant	CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.6819763183594	2	447.683039	893.351525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.029	1	32.029	31.529	32.529	0								0	0	0	1.7419	1	10327	10327		14.865	1.0895	1				28324	538	19173	19244	28697	28697					-0.09941705343794638
NNDLTLLVS	9	Unmodified	_NNDLTLLVS_					0	0	0			REV__nc|ENSG00000137801|P07996-2|THBS1	REV__nc|ENSG00000137801|P07996-2|THBS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7698669433594	2	494.769114	987.523675	0.52627	0.00026038	-0.73967	-0.00036596	-0.2134	-0.00010558	494.76880424570317	33.641	0.21711	33.641	33.551	33.768	0					14	5	3	0	0	0	0.14603	1	12449	12449		68.787	4.5796	1	342080	+		28325	14936	19174	19245	28698	28698					0.029414463437319682
NNEKLEGDAA	10	Unmodified	_NNEKLEGDAA_					0	0	0		ENST00000379452.3_1_3:32795167-32795302:+|nuORF	ENST00000379452.3_1_3:32795167-32795302:+|nuORF	ENST00000379452.3_1_3:32795167-32795302:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.749755859375	2	530.74891	1059.48327	-0.089805	-4.7664E-05	1.8279	0.00097015	1.7381	0.00092248	530.7498370409152	28.255	0.25099	28.255	28.074	28.325	0					14	9	2	0	0	0	0.536	1	9089	9089		41.427	4.9799	1	117990			28326	9082	19175	19246	28699	28699					-0.04409520046715443
NNEKLEGDAA	10	Unmodified	_NNEKLEGDAA_					0	0	0		ENST00000379452.3_1_3:32795167-32795302:+|nuORF	ENST00000379452.3_1_3:32795167-32795302:+|nuORF	ENST00000379452.3_1_3:32795167-32795302:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7499389648438	2	530.74891	1059.48327	1.7265	0.00091633	0.03955	2.0991E-05	1.766	0.00093732	530.7489838183997	28.506	0.40348	28.506	28.275	28.678	0					12	8	2	0	0	0	0.27065	1	10475	10475		70.816	10.698	1	489480			28327	9082	19175	19246	28700	28700					-0.04409520046715443
NNEKLFNII	9	Unmodified	_NNEKLFNII_					0	0	0			REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.874267578125	3	368.873113	1103.59751	0.48322	0.00017825	2.2235	0.00082017	2.7067	0.00099842	369.2082284626759	28.479	0.15862	28.479	28.407	28.565	0					9	6	2	0	0	0	0.27249	1	8902	8902		52.937	6.9645	1	67604	+		28328	21935	19176	19247	28701	28701					0.04985414506040797
NNESASAVM	9	Unmodified	_NNESASAVM_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.6997375488281	2	461.700374	921.386196	-0.89983	-0.00041545	-1.0331	-0.00047697	-1.9329	-0.00089242	461.69987123955843	37.589	0.23636	37.589	37.51	37.747	0					11	7	2	0	0	0	0.54267	1	14715	14715		27.882	2.4321	1	95682	+		28329	13290	19177	19248	28702	28702					-0.07764205527359991
NNETVRQIA	9	Unmodified	_NNETVRQIA_					0	0	0			REV__FBXO5|p.D340Mfs*30|1|0.38|ENSG00000112029|chr6:152972347-152972347|T/-|frameshift_variant	REV__FBXO5|p.D340Mfs*30|1|0.38|ENSG00000112029|chr6:152972347-152972347|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7762451171875	2	522.775262	1043.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.518	1	17.518	17.018	18.018	0								0	0	0	0.36609	1	4192	4192		20.947	0.4651	1		+		28330	13989	19178	19249	28703	28703					0.015944828067631533
NNGLANSIRD	10	Unmodified	_NNGLANSIRD_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2713623046875	2	537.270344	1072.52613	1.3072	0.00070233	0.94183	0.00050602	2.2491	0.0012083	537.2708403556774	12.61	0.097245	12.61	12.521	12.618	0					4	2	2	0	0	0	0.52707	1	2869	2869		42.396	1.618	1	298240			28331	1262	19179	19250	28704	28704					-0.007227051986092192
NNGQVYSLL	9	Unmodified	_NNGQVYSLL_					0	0	0		ENSG00000129038|ENST00000261921|LOXL1	ENSG00000129038|ENST00000261921|LOXL1	ENSG00000129038|ENST00000261921|LOXL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2611389160156	2	504.261456	1006.50836	-0.38647	-0.00019488	0.61299	0.00030911	0.22652	0.00011423	504.2615234168577	35.841	0.21113	35.841	35.737	35.948	0					8	4	2	0	0	0	0.19605	1	13888	13888		37.159	1.5408	1	95597			28332	3577	19180	19251	28705	28705					0.00536579546530902
NNIAYRLR	8	Unmodified	_NNIAYRLR_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2923278808594	2	510.290882	1018.56721	1.1963	0.00061047	0.56344	0.00028752	1.7598	0.00089799	510.29140789651854	33.687	0.38189	33.687	33.388	33.77	0					22	9	3	0	0	0	0.52345	1	12902	12902		57.811	2.3071	1	957030	+		28333	13693	19181	19252	28706	28706					0.05867100631519406
NNIDTMAKALT	11	Unmodified	_NNIDTMAKALT_					0	0	0		ENSG00000244476|ENST00000472091|ERVFRD-1	ENSG00000244476|ENST00000472091|ERVFRD-1	ENSG00000244476|ENST00000472091|ERVFRD-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	397.8722839355469	3	397.872784	1190.59652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.381	1	21.381	20.881	21.881	0								0	0	0	0.39288	1	5884	5884		38.714	1.2059	1				28334	7967	19182	19253	28707	28707					0.00884832074825681
NNIKKKDN	8	Unmodified	_NNIKKKDN_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2765808105469	2	487.274898	972.535243	0.81175	0.00039555	0.207	0.00010087	1.0188	0.00049641	487.27492505793316	40.277	0.4048	40.277	40.048	40.453	0					15	9	2	0	0	0	0.49216	1	15982	15982		60.972	6.1956	1	63887			28335	1907	19183	19254	28708	28708					0.04787688157705361
NNILKNAI	8	Unmodified	_NNILKNAI_					0	0	0		tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.26861572265625	2	450.269084	898.523616	0.63131	0.00028426	-2.0686	-0.00093143	-1.4373	-0.00064717	450.2682548291511	31.447	0.12901	31.447	31.372	31.501	0					6	3	2	0	0	0	0.65276	1	11466	11466		40.573	0	1	154970			28336	22623	19184	19255	28709	28709					0.07029491134358068
NNITMLVPGG	10	Unmodified	_NNITMLVPGG_					0	0	0		ENST00000468872.5_1_7:32526875-32527392:-|nuORF;nc|ENSG00000106355|Q9Y4Y9-2|LSM5;ENSG00000106355|ENST00000450169|LSM5	ENST00000468872.5_1_7:32526875-32527392:-|nuORF	ENST00000468872.5_1_7:32526875-32527392:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2648010253906	2	508.265684	1014.51682	0.1085	5.5144E-05	-3.991	-0.0020285	-3.8825	-0.0019733	508.26415928560687	34.068	0.24844	34.068	33.961	34.209	0					13	7	3	0	0	0	0.41335	1	12018	12018		54.776	8.8041	1	67258			28337	2437	19185	19256	28710	28710					0.010138101915117659
NNIVVILL	8	Unmodified	_NNIVVILL_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3;nc|ENSG00000001461|Q6P499-3|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.291748046875	2	449.292028	896.569503	0.65519	0.00029437	-1.1953	-0.00053703	-0.54009	-0.00024266	449.29141434067606	37.347	0.23653	37.347	37.191	37.428	0					12	7	2	0	0	0	0.59411	1	14602	14602		50.025	5.4935	1	106170			28338	922	19186	19257	28711	28711					0.11708136316622131
NNKDRSGPVS	10	Unmodified	_NNKDRSGPVS_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2713623046875	2	537.270344	1072.52613	2.1071	0.0011321	0.061063	3.2807E-05	2.1682	0.0011649	537.27043704218	12.574	0.07972	12.574	12.502	12.582	0					4	2	2	0	0	0	0.60281	1	2671	2671		33.922	1.9668	1	181620	+		28339	17835	19187	19258	28712	28712					-0.007227051986319566
NNKDRSGPVS	10	Unmodified	_NNKDRSGPVS_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2711791992188	2	537.270344	1072.52613	0.69813	0.00037509	1.167	0.00062701	1.8652	0.0010021	537.2708775994203	12.55	0.10531	12.55	12.494	12.599	0					4	2	2	0	0	0	0.2538	1	2706	2706		72.879	3.2516	1	138880	+		28340	17835	19187	19258	28713	28713					-0.007227051986319566
NNKHAEDVV	9	Unmodified	_NNKHAEDVV_					0	0	0			REV__tr|U7SVK6|U7SVK6_FUSNURibosomalRNAsmallsubunitmethyltransferaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmIPE=3SV=1	REV__tr|U7SVK6|U7SVK6_FUSNURibosomalRNAsmallsubunitmethyltransferaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmIPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2525634765625	2	513.254163	1024.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.208	1	33.208	32.708	33.708	0								0	0	0	0.27939	1	12695	12695		39.253	0.23134	1		+		28341	21995	19188	19259	28714	28714					-0.01749492601629754
NNKILPMHF	9	Unmodified	_NNKILPMHF_					0	0	0		nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2955932617188	2	557.297319	1112.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.914	1	35.914	35.414	36.414	0								0	0	0	0.31623	1	13953	13953		31.955	2.8053	1				28342	4443	19189	19260	28715	28715					0.028297956993810658
NNKKLLDPY	9	Unmodified	_NNKKLLDPY_					0	0	0			REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.806640625	2	552.806031	1103.59751	1.596	0.0008823	-3.7465	-0.0020711	-2.1504	-0.0011888	552.8042351727273	37.263	0.57027	37.263	37.058	37.629	0					35	17	3	0	0	0	0.46194	1	14573	14573		15.642	0	1	333210	+		28343	15674	19190	19261	28716	28716					0.04985414506040797
NNKLQDFTK	9	Unmodified	_NNKLQDFTK_					0	0	0		SLIT1|p.E1322K|1|0.59|ENSG00000187122|chr10:97002894-97002894|C/T|missense_variant	SLIT1|p.E1322K|1|0.59|ENSG00000187122|chr10:97002894-97002894|C/T|missense_variant	SLIT1|p.E1322K|1|0.59|ENSG00000187122|chr10:97002894-97002894|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2938842773438	2	554.293288	1106.57202	1.8172	0.0010072	-1.3754	-0.00076238	0.44176	0.00024487	554.2925349003631	24.701	0.22146	24.701	24.615	24.836	0					12	5	3	0	0	0	0.15163	1	8345	8345		67.494	1.0644	1	588980			28344	22423	19191	19262	28717	28717					0.022999399835953227
NNKLYVIG	8	Unmodified	_NNKLYVIG_					0	0	0		ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7633361816406	2	460.763635	919.512717	0.81526	0.00037564	-1.4753	-0.00067976	-0.66003	-0.00030412	460.7629961912448	23.491	0.22953	23.491	23.309	23.538	0					7	5	2	0	0	0	0.74117	1	7800	7800		28.254	1.4582	1	310780			28345	7211	19192	19263	28718	28718					0.04974088760104678
NNKSLAASQI	10	Unmodified	_NNKSLAASQI_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2827758789062	2	523.285463	1044.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.807	1	37.807	37.307	38.307	0								0	0	0	0.34115	1	13529	13529		44.377	0	1		+		28346	13088	19193	19264	28719	28719					0.03587653466570373
NNKVYLDLK	9	Unmodified	_NNKVYLDLK_					0	0	0			REV__tr|U7SUJ2|U7SUJ2_FUSNUSmallconductancemechanosensitivechannelOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01189PE=3SV=1	REV__tr|U7SUJ2|U7SUJ2_FUSNUSmallconductancemechanosensitivechannelOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01189PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.81494140625	2	553.813856	1105.61316	0.49844	0.00027604	0.47506	0.0002631	0.9735	0.00053914	553.8141938579189	32.685	0.21539	32.685	32.567	32.782	0					11	5	3	0	0	0	0.41113	1	12442	12442		40.778	5.1599	1	124430	+		28347	21978	19194	19265	28720	28720					0.06457701023077789
NNLADAVI	8	Unmodified	_NNLADAVI_					0	0	0		CON__Q2KJ83	CON__Q2KJ83	CON__Q2KJ83	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.2243957519531	2	415.224342	828.434132	-0.16759	-6.9585E-05	0.044705	1.8562E-05	-0.12288	-5.1023E-05	415.2242623584816	21.613	0.17613	21.613	21.568	21.744	0					7	5	2	0	0	0	0.64096	1	5988	5988		42.474	0	1	116570		+	28348	655	19195	19266	28721	28721					0.013052364549935191
NNLQLELN	8	Unmodified	_NNLQLELN_					0	0	0		tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2541198730469	2	479.253631	956.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.754	1	32.754	32.254	33.254	0								0	0	0	1.7419	1	11421	11421		31.955	0	1				28349	22658	19196	19267	28722	28722					0.012722930294671642
NNMLVVIW	8	Unmodified	_NNMLVVIW_					0	0	0		ENST00000370872.7_1_1:75171713-75171794:-|nuORF	ENST00000370872.7_1_1:75171713-75171794:-|nuORF	ENST00000370872.7_1_1:75171713-75171794:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7691955566406	2	494.767863	987.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.638	1	33.638	33.138	34.138	0								0	0	0	1.7419	1	12806	12806		39.021	1.21	1				28350	8962	19197	19268	28723	28723					0.026913194050507627
NNNELFEK	8	Unmodified	_NNNELFEK_					0	0	0			REV__tr|U7T2P2|U7T2P2_FUSNU3-oxoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00519PE=4SV=1	REV__tr|U7T2P2|U7T2P2_FUSNU3-oxoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00519PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.24371337890625	2	504.243264	1006.47197	-0.061388	-3.0954E-05	0.0066219	3.3391E-06	-0.054766	-2.7615E-05	504.24340020519645	23.056	0.27594	23.056	22.907	23.183	0					15	9	2	0	0	0	0.63077	1	6600	6600		44.117	0	1	169160	+		28351	22112	19198	19269	28724	28724					-0.031002973501813358
NNNNFQSK	8	Unmodified	_NNNNFQSK_					0	0	0		nc|ENSG00000249139|O95925-2|EPPIN;ENSG00000101448|ENST00000354280|EPPIN;nc|ENSG00000249139|O95925-3|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2248840332031	2	483.225405	964.436257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.628	1	38.628	38.128	39.128	0								0	0	0	1.7419	1	15203	15203		44.117	1.7207	1				28352	11788	19199	19270	28725	28725					-0.047383348071889486
NNQGLDFTK	9	Unmodified	_NNQGLDFTK_					0	0	0		tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1	tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1	tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7567138671875	2	518.756538	1035.49852	0.13726	7.1206E-05	0.034127	1.7704E-05	0.17139	8.8909E-05	518.7566000719291	23.195	0.13238	23.195	23.12	23.252	0					7	4	2	0	0	0	0.54267	1	6937	6937		27.882	5.9224	1	131170			28353	22719	19200	19271	28726	28726					-0.017806084588755766
NNQIIYLNI	9	Unmodified	_NNQIIYLNI_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.8084106445312	2	552.806031	1103.59751	0.62006	0.00034277	2.5316	0.0013995	3.1516	0.0017422	552.8073527821347	28.766	0.41511	28.766	28.631	29.046	0					13	10	2	0	0	0	0.24334	1	10211	10211		32.812	0	1	422330	+		28354	13326	19201	19272	28727	28727					0.0498541450601806
NNQRKKQTK	9	Unmodified	_NNQRKKQTK_					0	0	0		ENST00000485672.2_1_19:42488766-42489464:-|nuORF	ENST00000485672.2_1_19:42488766-42489464:-|nuORF	ENST00000485672.2_1_19:42488766-42489464:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.8873596191406	3	382.223028	1143.64725	-0.53354	-0.00020393	-3.0568	-0.0011684	-3.5903	-0.0013723	382.22199785863467	24.971	0.20753	24.971	24.869	25.076	0					6	4	2	0	0	0	0.30841	1	8695	8695		49.536	6.6718	1	422410			28355	10009	19202	19273	28728	28728					0.0811754223468597
NNRSLDLD	8	Unmodified	_NNRSLDLD_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264;CON__P50446;CON__Q6IFZ6;ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5	ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__Q8BGZ7	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7327880859375	2	473.733063	945.451573	-0.2932	-0.0001389	-0.59187	-0.00028039	-0.88507	-0.00041929	473.73283565650894	25.359	0.20518	25.359	25.292	25.497	0					16	8	2	0	0	0	0.46013	1	7617	7617		64.207	12.872	1	247500		+	28356	630;638;666	19203	19274	28729	28729					-0.02333468009999251
NNRSLDLD	8	Unmodified	_NNRSLDLD_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264;CON__P50446;CON__Q6IFZ6;ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5	ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__Q8BGZ7	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.732666015625	2	473.733063	945.451573	-0.51409	-0.00024354	-0.097948	-4.6401E-05	-0.61203	-0.00028994	473.73306924790256	25.688	0.30112	25.688	25.573	25.874	0					8	5	2	0	0	0	0.27635	1	8821	8821		90.37	16.395	1	268330		+	28357	630;638;666	19203	19274	28730	28730					-0.02333468009999251
NNRSLDLD	8	Unmodified	_NNRSLDLD_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264;CON__P50446;CON__Q6IFZ6;ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5	ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__Q8BGZ7	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7338562011719	2	473.733063	945.451573	-0.6401	-0.00030324	0.1828	8.66E-05	-0.45729	-0.00021664	473.7331633584671	25.417	0.1642	25.417	25.335	25.499	0					11	6	2	0	0	0	0.59773	1	7890	7890		49.442	8.6634	1	133620		+	28358	630;638;666	19203	19274	28731	28731					-0.02333468009999251
NNRSLDLD	8	Unmodified	_NNRSLDLD_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264;CON__P50446;CON__Q6IFZ6;ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5	ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__Q8BGZ7	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.73333740234375	2	473.733063	945.451573	-0.62195	-0.00029464	0.23788	0.00011269	-0.38408	-0.00018195	473.733457958235	25.628	0.21841	25.628	25.519	25.738	0					7	4	2	0	0	0	0.25873	1	9132	9132		96.19	22.216	1	147770		+	28359	630;638;666	19203	19274	28732	28732					-0.02333468009999251
NNRSLDLD	8	Unmodified	_NNRSLDLD_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264;CON__P50446;CON__Q6IFZ6;ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5	ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__Q8BGZ7	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7327880859375	2	473.733063	945.451573	-2.5465	-0.0012064	1.9126	0.00090605	-0.63393	-0.00030032	473.7340445486639	25.479	0.19648	25.479	25.373	25.57	0					11	5	3	0	0	0	0.25873	1	8110	8110		96.19	13.95	1	162850		+	28360	630;638;666	19203	19274	28733	28733					-0.02333468009999251
NNSFNIEAF	9	Unmodified	_NNSFNIEAF_					0	0	0			REV__tr|U7SWL0|U7SWL0_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01081PE=4SV=1	REV__tr|U7SWL0|U7SWL0_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01081PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2456665039062	2	528.243264	1054.47197	3.4674	0.0018316	0.99386	0.000525	4.4612	0.0023566	528.2438004473701	37.049	0.306	37.049	36.897	37.203	0					11	6	3	0	0	0	0.45358	1	14462	14462		37.159	4.3467	1	442350	+		28361	22006	19204	19275	28734	28734					-0.05308297350211433
NNSKNKTLV	9	Unmodified	_NNSKNKTLV_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2873840332031	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.471	1	35.471	34.971	35.971	0								0	0	0	0.28191	1	12639	12639		39.253	2.0937	1				28362	6450	19205	19276	28735	28735					0.05383957329183886
NNSLGLSAL	9	Unmodified	_NNSLGLSAL_					0	0	0			REV__ENSG00000099769|ENST00000215539|IGFALS	REV__ENSG00000099769|ENST00000215539|IGFALS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.74249267578125	2	444.742899	887.471246	-0.37862	-0.00016839	-2.0409	-0.00090766	-2.4195	-0.0010761	444.74200595952055	37.916	0.14618	37.916	37.782	37.928	0					6	5	2	0	0	0	0.35021	1	14393	14393		45.972	4.5456	1	152370	+		28363	13496	19206	19277	28736	28736					0.02300908000745494
NNSLQNLYLLV	11	Unmodified	_NNSLQNLYLLV_					0	0	0		nc|ENSG00000163291|Q6TCH7-2|PAQR3	nc|ENSG00000163291|Q6TCH7-2|PAQR3	nc|ENSG00000163291|Q6TCH7-2|PAQR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	645.8548583984375	2	645.856252	1289.69795	-1.1452	-0.00073961	0.2977	0.00019227	-0.84746	-0.00054734	645.8562856100904	43.026	0.26059	43.026	42.928	43.189	0					13	7	3	0	0	0	0.78498	1	17198	17198		18.262	0.89712	1	282730			28364	11614	19207	19278	28737	28737					0.06469026769013908
NNSNWNLR	8	Unmodified	_NNSNWNLR_					0	0	0		MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant;MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant;MBD4|p.K313Rfs*13|2|0.15|ENSG00000129071|chr3:129436705-129436706|TT/-|frameshift_variant;nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant	MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2477111816406	2	509.246672	1016.47879	-0.5097	-0.00025957	1.5962	0.00081287	1.0865	0.0005533	509.2470633486317	27.683	0.8279	27.683	27.327	28.155	0					58	29	3	0	0	0	0.61925	1	8936	8936		45.972	1.5951	1	245660			28365	11351	19208	19279	28738	28738					-0.02878939678964798
NNTAKIRHP	9	Unmodified	_NNTAKIRHP_					0	0	0			REV__nc|ENSG00000198431|Q16881-7|TXNRD1	REV__nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7945556640625	2	525.793789	1049.57303	3.4515	0.0018148	-1.4172	-0.00074518	2.0343	0.0010696	525.7929957132081	33.176	0.21095	33.176	33.121	33.332	0					11	4	4	0	0	0	0.41113	1	12599	12599		40.778	40.778	1	684690	+		28366	17398	19209	19280	28739	28739					0.050221991431726565
NNTSIKGF	8	Unmodified	_NNTSIKGF_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7299499511719	2	440.729792	879.445031	-1.0615	-0.00046784	0.7453	0.00032848	-0.31621	-0.00013936	440.7300874079412	23.948	0.36041	23.948	23.797	24.157	0					18	12	2	0	0	0	0.68432	1	7249	7249		35.618	1.4457	1	78789			28367	1170	19210	19281	28740	28740					0.0004863882929839747
NNTTSFSNQG	10	Unmodified	_NNTTSFSNQG_					0	0	0			REV__ENSG00000143797|ENST00000305997|MBOAT2	REV__ENSG00000143797|ENST00000305997|MBOAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2313842773438	2	535.230884	1068.44722	0.17516	9.3754E-05	0.70781	0.00037884	0.88297	0.0004726	535.2313448578033	16.234	0.35742	16.234	16.049	16.407	0					19	8	3	0	0	0	0.52275	1	4361	4361		42.864	7.246	1	603240	+		28368	15206	19211	19282	28741	28741					-0.08426977223575705
NNVTAGQHQ	9	Unmodified	_NNVTAGQHQ_					0	0	0			REV__RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant	REV__RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.73150634765625	2	484.730855	967.447156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.905	1	12.905	12.405	13.405	0								0	0	0	0.3304	1	2816	2816		29.15	0	1		+		28369	16859	19212	19283	28742	28742					-0.03786932432899448
NNYNKDLI	8	Unmodified	_NNYNKDLI_					0	0	0			REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2537536621094	2	497.253631	992.49271	2.9015	0.0014428	-2.0796	-0.0010341	0.82199	0.00040874	497.2527526218692	36.403	0.26508	36.403	36.297	36.562	0					10	5	3	0	0	0	0.52345	1	14157	14157		57.811	1.0902	1	296210	+		28370	21866	19213	19284	28743	28743					-0.003837069705241447
NPADSISHVAY	11	Unmodified	_NPADSISHVAY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	587.7824096679688	2	587.280377	1172.5462	1.5154	0.00088996	-0.60336	-0.00035434	0.91204	0.00053562	587.2799558223707	34.324	0.37166	34.324	34.055	34.426	0					28	17	3	0	0	0	0.62108	1	11169	11169		35.152	0.97948	1	104310			28371	7354;23071	19214	19285	28744	28744					-0.03316954258639271
NPADSISHVAY	11	Unmodified	_NPADSISHVAY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.2803955078125	2	587.280377	1172.5462	1.1038	0.00064826	-0.97292	-0.00057138	0.13091	7.6883E-05	587.2796633232598	34.538	0.60101	34.538	34.143	34.744	0					42	15	4	0	0	0	0.14858	1	12794	12794		80.455	36.338	1	775530			28372	7354;23071	19214	19285	28745	28745					-0.03316954258639271
NPADSISHVAY	11	Unmodified	_NPADSISHVAY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.2804565429688	2	587.280377	1172.5462	1.4371	0.00084401	-2.4278	-0.0014258	-0.9907	-0.00058182	587.2785201261509	34.578	1.1681	34.578	33.906	35.075	0					58	30	4	0	0	0	0.0011742	1	13294	13294		131.62	64.123	1	1065400			28373	7354;23071	19214	19285	28746	28746					-0.03316954258639271
NPADSISHVAY	11	Unmodified	_NPADSISHVAY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.2803344726562	2	587.280377	1172.5462	0.53838	0.00031618	-0.12121	-7.1184E-05	0.41717	0.00024499	587.280318205006	34.318	0.43775	34.318	34.065	34.503	0					29	14	3	0	0	0	0.12944	1	12104	12104		82.75	27.974	1	110570			28374	7354;23071	19214	19285	28747	28747					-0.03316954258639271
NPADSISHVAY	11	Unmodified	_NPADSISHVAY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.2806396484375	2	587.280377	1172.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.294	1	34.294	33.794	34.794	0								0	0	0	0.40299	1	12125	12125		36.447	2.9312	1				28375	7354;23071	19214	19285	28748	28748					-0.03316954258639271
NPADSISHVAY	11	Unmodified	_NPADSISHVAY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.2804565429688	2	587.280377	1172.5462	0.10367	6.0884E-05	0.91858	0.00053946	1.0223	0.00060035	587.2808332732467	34.445	0.40607	34.445	34.245	34.651	0					22	8	3	0	0	0	0.13966	1	13195	13195		81.525	47.352	1	169360			28376	7354;23071	19214	19285	28749	28749					-0.03316954258639271
NPADSISHVAY	11	Unmodified	_NPADSISHVAY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.28125	2	587.280377	1172.5462	1.4271	0.00083812	-2.4495	-0.0014386	-1.0224	-0.00060043	587.2787944660929	34.53	1.1894	34.53	33.892	35.081	0					63	24	4	0	0	0	0.00049974	1	13187	13187		140.11	90.671	1	1922200			28377	7354;23071	19214	19285	28750	28750					-0.03316954258639271
NPAIRVFEY	9	Unmodified	_NPAIRVFEY_					0	0	0		nc|ENSG00000130768|Q92485-2|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF;ENSG00000130768|ENST00000373894|SMPDL3B	nc|ENSG00000130768|Q92485-2|SMPDL3B	nc|ENSG00000130768|Q92485-2|SMPDL3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7927856445312	2	554.792924	1107.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.847	1	41.847	41.347	42.347	0								0	0	0	0.088368	1	16669	16669		75.043	32.647	1				28378	3671	19215	19286	28751	28751					0.021811453345662812
NPAIRVFEYD	10	Unmodified	_NPAIRVFEYD_					0	0	0		nc|ENSG00000130768|Q92485-2|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF;ENSG00000130768|ENST00000373894|SMPDL3B	nc|ENSG00000130768|Q92485-2|SMPDL3B	nc|ENSG00000130768|Q92485-2|SMPDL3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.3092651367188	2	612.306395	1222.59824	0.40868	0.00025024	2.4003	0.0014697	2.809	0.0017199	612.3080037558046	28.604	0.37327	28.604	28.519	28.893	0					13	9	2	0	0	0	0.55603	1	9510	9510		39.253	1.4413	1	101440			28379	3671	19216	19287	28752	28752					-0.004157908449087699
NPALENLVY	9	Unmodified	_NPALENLVY_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7718505859375	2	516.771657	1031.52876	1.345	0.00069507	0.39636	0.00020483	1.7414	0.0008999	516.7718608436896	36.322	0.23693	36.322	36.236	36.472	0					20	12	2	0	0	0	0.24095	1	11896	11896		56.721	0.28726	1	123260			28380	3537	19217	19288	28753	28753					0.014257502063173888
NPARDAALF	9	Unmodified	_NPARDAALF_					0	0	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7565612792969	2	487.756341	973.498129	0.73612	0.00035905	-0.82419	-0.00040201	-0.088077	-4.296E-05	487.756007067213	34.095	0.30787	34.095	33.998	34.306	0					17	8	3	0	0	0	0.24334	1	12669	12669		56.434	3.0823	1	457920			28381	2177	19218	19289	28754	28754					0.010320166119413443
NPASGEKFAY	10	Unmodified	_NPASGEKFAY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2598266601562	2	542.258914	1082.50327	1.7863	0.00096864	-0.4509	-0.0002445	1.3354	0.00072414	542.2585527897053	29.365	0.13931	29.365	29.292	29.432	0					8	5	2	0	0	0	0.4287	1	9266	9266		53.089	21.134	1	38045			28382	925	19219	19290	28755	28755					-0.03467724316078602
NPASGEKFAY	10	Unmodified	_NPASGEKFAY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2592163085938	2	542.258914	1082.50327	1.8875	0.0010235	-1.327	-0.00071958	0.56046	0.00030391	542.2582367201702	29.612	0.34029	29.612	29.527	29.867	0					14	8	3	0	0	0	0.0081296	1	10593	10593		152.06	93.279	1	251850			28383	925	19219	19290	28756	28756					-0.03467724316078602
NPASGEKFAY	10	Unmodified	_NPASGEKFAY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7617797851562	2	542.258914	1082.50327	1.2379	0.00067128	0.2343	0.00012705	1.4722	0.00079833	542.760875382635	29.625	0.26156	29.625	29.522	29.784	0					9	5	2	0	0	0	0.11048	1	11005	11005		93.598	36.877	1	134520			28384	925	19219	19290	28757	28757					-0.03467724316078602
NPASGEKFAY	10	Unmodified	_NPASGEKFAY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.25927734375	2	542.258914	1082.50327	0.62912	0.00034115	-0.044947	-2.4373E-05	0.58418	0.00031678	542.2589046169151	29.557	0.25855	29.557	29.456	29.715	0					11	5	3	0	0	0	0.014024	1	10833	10833		129.42	60.634	1	294300			28385	925	19219	19290	28758	28758					-0.03467724316078602
NPDESSKPNM	10	Unmodified	_NPDESSKPNM_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.7429809570312	2	559.74277	1117.47099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.662	1	19.662	19.162	20.162	0								0	0	0	0.14936	1	5973	5973		70.399	20.957	1				28386	6306	19220	19291	28759	28759					-0.08304879781394447
NPDPAVYQL	9	Unmodified	_NPDPAVYQL_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7569885253906	2	508.756007	1015.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.026	1	43.026	42.526	43.526	0								0	0	0	0.095784	1	16263	16263		72.879	19.528	1				28387	11807	19221	19292	28760	28760					-0.00966822827751912
NPDSDKIIY	9	Unmodified	_NPDSDKIIY_					0	0	0		ENSG00000156052|ENST00000286548|GNAQ;ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000156052|ENST00000286548|GNAQ;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENST00000586180.1_1_19:3118803-3121174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7666625976562	2	532.766571	1063.51859	1.0622	0.0005659	-0.98961	-0.00052723	0.072582	3.8669E-05	532.7662075323891	31.676	0.21113	31.676	31.524	31.736	0					7	4	2	0	0	0	0.11898	1	11958	11958		75.043	9.2401	1	91668			28388	1775;10901	19222	19293	28761	28761					-0.010628575188775358
NPDTHSWEM	9	Unmodified	_NPDTHSWEM_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7245483398438	2	558.724381	1115.43421	-0.13574	-7.5844E-05	0.42245	0.00023603	0.28671	0.00016019	558.7246736879225	33.711	0.45065	33.711	33.546	33.997	0					18	11	2	0	0	0	0.17854	1	12897	12897		64.207	64.207	1	393150			28389	4567	19223	19294	28762	28762					-0.11889131607290437
NPDVIEEPT	9	Unmodified	_NPDVIEEPT_					0	0	0			REV__FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant	REV__FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.49822998046875	3	338.497712	1012.47131	0.51355	0.00017384	0.84385	0.00028564	1.3574	0.00045948	338.4980429053453	22.423	0.64547	22.423	22.323	22.969	0					41	15	5	0	0	0	0.48623	1	7272	7272		33.922	2.2874	1	10160000	+		28390	17292	19224	19295	28763	28763					-0.03443136789894652
NPEAAVHIF	9	Unmodified	_NPEAAVHIF_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.26031494140625	2	499.258717	996.50288	0.57694	0.00028804	-0.11396	-5.6896E-05	0.46298	0.00023114	499.25865425490684	39.633	0.22444	39.633	39.565	39.79	0					12	9	2	0	0	0	0.07136	1	15097	15097		87.696	26.724	1	42698			28391	4241	19225	19296	28764	28764					0.0044890075471357704
NPEEHATYY	9	Unmodified	_NPEEHATYY_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2385864257812	2	562.238178	1122.4618	1.7869	0.0010047	-1.0011	-0.00056286	0.78579	0.0004418	562.2375904950021	26.087	0.25921	26.087	26	26.259	0					14	6	3	0	0	0	0.0406	1	8970	8970		98.629	48.605	1	621260			28392	1689	19226	19297	28765	28765					-0.09452905075431772
NPEEHATYY	9	Unmodified	_NPEEHATYY_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2383422851562	2	562.238178	1122.4618	1.7795	0.0010005	-0.80598	-0.00045315	0.97354	0.00054736	562.2374115631341	26.043	0.26961	26.043	25.932	26.202	0					14	5	4	0	0	0	0.021961	1	9165	9165		118.74	62.022	1	676170			28393	1689	19226	19297	28766	28766					-0.09452905075431772
NPEEIEIDFE	10	Unmodified	_NPEEIEIDFE_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;ENST00000469132.1_1_6:32947542-32947941:+|nuORF;ENST00000482838.1_1_6:32947542-32948492:+|nuORF	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	617.7761840820312	2	617.777333	1233.54011	-0.66386	-0.00041012	-1.4599	-0.00090188	-2.1237	-0.001312	617.7765961925895	27.916	0.26037	27.916	27.762	28.022	0					20	9	3	0	0	0	0.59277	1	8937	8937		35.152	8.4591	1	111250			28394	7686	19227	19298	28767	28767					-0.0673151728085486
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2188415527344	2	478.218734	954.422915	0.016622	7.949E-06	-0.14695	-7.0274E-05	-0.13033	-6.2325E-05	478.2187976968165	22.887	0.20308	22.887	22.812	23.015	0					16	6	3	0	0	0	0.20551	1	6548	6548		60.972	7.6205	1	451570			28395	2167	19228	19299	28768	28768					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2186584472656	2	478.218734	954.422915	0.42716	0.00020428	-1.1486	-0.00054926	-0.72139	-0.00034498	478.21834434990586	23.226	0.28263	23.226	23.134	23.417	0					21	6	5	0	0	0	0.055856	1	7654	7654		93.195	27.392	1	3706900			28396	2167	19228	19299	28769	28769					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2183837890625	2	478.218734	954.422915	-1.4578	-0.00069717	0.5054	0.00024169	-0.95245	-0.00045548	478.2190905439012	22.965	0.25128	22.965	22.847	23.098	0					23	8	4	0	0	0	0.071197	1	6830	6830		87.754	39.839	1	1134300			28397	2167	19228	19299	28770	28770					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2182922363281	2	478.218734	954.422915	0.65216	0.00031188	-1.7114	-0.00081844	-1.0593	-0.00050656	478.21804619612095	23.154	0.36776	23.154	23.044	23.412	0					19	7	5	0	0	0	0.055856	1	7947	7947		93.195	38.431	1	6771500			28398	2167	19228	19299	28771	28771					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7196044921875	2	478.218734	954.422915	-0.32484	-0.00015534	-0.76436	-0.00036553	-1.0892	-0.00052088	478.21841988448136	22.996	0.22477	22.996	22.911	23.136	0					12	5	3	0	0	0	0.13519	1	6941	6941		71.296	18.997	1	822760			28399	2167	19228	19299	28772	28772					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.21826171875	2	478.218734	954.422915	-2.8993	-0.0013865	1.2871	0.00061549	-1.6122	-0.00077099	478.2194916463257	23.024	0.22215	23.024	22.939	23.162	0					12	5	3	0	0	0	0.27249	1	6949	6949		52.937	1.6012	1	245750			28400	2167	19228	19299	28773	28773					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2184143066406	2	478.218734	954.422915	0.86267	0.00041254	-1.7724	-0.00084761	-0.90976	-0.00043507	478.2180295178292	23.125	0.46138	23.125	22.973	23.435	0					23	9	5	0	0	0	0.034359	1	7805	7805		104.75	49.242	1	5731500			28401	2167	19228	19299	28774	28774					-0.05611908910782404
NPEIEKKY	8	Unmodified	_NPEIEKKY_					0	0	0		VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant;nc|ENSG00000100483|Q9H867-2|VCPKMT;nc|ENSG00000100483|Q9H867-5|VCPKMT;ENSG00000100483|ENST00000395860|VCPKMT	VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant	VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7730712890625	2	510.771657	1019.52876	0.97867	0.00049988	-0.053296	-2.7222E-05	0.92538	0.00047266	510.7719056074268	42.831	0.23035	42.831	42.694	42.924	0					14	11	2	0	0	0	0.32597	1	16183	16183		79.713	26.776	1	93390			28402	2035	19229	19300	28775	28775					0.019777502063334396
NPEIEKKY	8	Unmodified	_NPEIEKKY_					0	0	0		VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant;nc|ENSG00000100483|Q9H867-2|VCPKMT;nc|ENSG00000100483|Q9H867-5|VCPKMT;ENSG00000100483|ENST00000395860|VCPKMT	VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant	VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.77191162109375	2	510.771657	1019.52876	0.35707	0.00018238	0.89342	0.00045633	1.2505	0.00063871	510.77209400037657	42.796	0.31257	42.796	42.64	42.953	0					26	15	2	0	0	0	0.23635	1	16761	16761		118.74	27.966	1	235270			28403	2035	19229	19300	28776	28776					0.019777502063334396
NPEIEKKY	8	Unmodified	_NPEIEKKY_					0	0	0		VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant;nc|ENSG00000100483|Q9H867-2|VCPKMT;nc|ENSG00000100483|Q9H867-5|VCPKMT;ENSG00000100483|ENST00000395860|VCPKMT	VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant	VCPKMT|p.K180E|1|0.05|ENSG00000100483|chr14:50114317-50114317|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7725524902344	2	510.771657	1019.52876	0.0063408	3.2387E-06	0.87829	0.00044861	0.88463	0.00045184	510.7721534256888	42.719	0.38713	42.719	42.559	42.946	0					26	11	3	0	0	0	0.29212	1	17055	17055		85.161	28.44	1	513270			28404	2035	19229	19300	28777	28777					0.019777502063334396
NPENLATLERY	11	Unmodified	_NPENLATLERY_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	660.3330078125	2	660.333141	1318.65173	2.2639	0.0014949	-2.1835	-0.0014418	0.080409	5.3097E-05	660.3317650147404	38.869	0.11069	38.869	38.817	38.928	0					8	4	2	0	0	0	0.62791	1	15271	15271		34.501	9.9817	1	78521			28405	6746;10981	19230	19301	28778	28778					0.005149618669747724
NPENLATLERY	11	Unmodified	_NPENLATLERY_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	660.334716796875	2	660.333141	1318.65173	-2.2163	-0.0014635	3.9024	0.0025769	1.6861	0.0011134	660.3356896242507	38.831	0.1575	38.831	38.729	38.886	0					6	3	2	0	0	0	0.013225	1	15311	15311		123.62	63.688	1	275780			28406	6746;10981	19230	19301	28779	28779					0.005149618669747724
NPENSELKY	9	Unmodified	_NPENSELKY_					0	0	0		nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.2628173828125	2	547.261653	1092.50875	1.6791	0.0009189	0.83462	0.00045676	2.5137	0.0013757	547.2622827820951	27.08	0.12386	27.08	27.012	27.136	0					6	4	2	0	0	0	0.095583	1	8308	8308		80.455	7.5754	1	75308			28407	4445	19231	19302	28780	28780					-0.03380045524295383
NPENSELKY	9	Unmodified	_NPENSELKY_					0	0	0		nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.26220703125	2	547.261653	1092.50875	1.8545	0.0010149	-0.77257	-0.0004228	1.0819	0.00059209	547.2611910060359	27.296	0.26337	27.296	27.209	27.472	0					13	6	3	0	0	0	0.0080613	1	9529	9529		145.16	65.443	1	526380			28408	4445	19231	19302	28781	28781					-0.03380045524295383
NPENSELKY	9	Unmodified	_NPENSELKY_					0	0	0		nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.2625732421875	2	547.261653	1092.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.088	1	27.088	26.588	27.588	0								0	0	0	0.0075199	1	8592	8592		112.41	50.304	1				28409	4445	19231	19302	28782	28782					-0.03380045524295383
NPENSELKY	9	Unmodified	_NPENSELKY_					0	0	0		nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.262451171875	2	547.261653	1092.50875	1.1403	0.00062402	0.87883	0.00048095	2.0191	0.001105	547.2621559787428	27.169	0.12817	27.169	27.09	27.219	0					5	3	2	0	0	0	0.16806	1	8864	8864		65.465	18.699	1	102870			28410	4445	19231	19302	28783	28783					-0.03380045524295383
NPENSELKY	9	Unmodified	_NPENSELKY_					0	0	0		nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2616577148438	2	547.261653	1092.50875	0.53436	0.00029243	-0.16209	-8.8707E-05	0.37226	0.00020373	547.2614197684738	27.264	0.21943	27.264	27.154	27.373	0					9	4	3	0	0	0	0.0040894	1	9751	9751		162.25	93.466	1	390810			28411	4445	19231	19302	28784	28784					-0.03380045524295383
NPENSELKY	9	Unmodified	_NPENSELKY_					0	0	0		nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	nc|ENSG00000141448|Q92908-2|GATA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2623901367188	2	547.261653	1092.50875	1.8947	0.0010369	-0.8184	-0.00044788	1.0763	0.00058901	547.2610937780927	27.298	0.27059	27.298	27.137	27.407	0					12	5	3	0	0	0	0.0047071	1	9765	9765		159.28	81.958	1	677610			28412	4445	19231	19302	28785	28785					-0.03380045524295383
NPEPNTVSY	9	Unmodified	_NPEPNTVSY_					0	0	0		nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7353820800781	2	510.735271	1019.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.662	1	30.662	30.162	31.162	0								0	0	0	0.22284	1	11079	11079		47.657	10.629	1				28413	1923	19232	19303	28786	28786					-0.05296003587079667
NPFDQKLYVY	10	Unmodified	_NPFDQKLYVY_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	644.3262939453125	2	643.824421	1285.63429	-1.009	-0.00064963	0.78284	0.00050401	-0.22618	-0.00014562	644.3266335637969	46.192	0.31826	46.192	46.061	46.38	0					30	14	3	0	0	0	0.36647	1	18473	18473		59.931	23.484	1	161350			28414	2191	19233	19304	28787	28787					0.0028966633196887415
NPFEKGDLY	9	Unmodified	_NPFEKGDLY_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2;ENST00000569553.1_1_16:46992902-46993307:-|nuORF	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.7618408203125	2	541.761289	1081.50803	1.8912	0.0010246	-1.0383	-0.00056249	0.8529	0.00046207	541.760676095016	37.441	0.24895	37.441	37.324	37.573	0					10	7	2	0	0	0	0.24095	1	14183	14183		56.721	12.604	1	103880			28415	1433	19234	19305	28788	28788					-0.029468401733083738
NPFIEVKKS	9	Unmodified	_NPFIEVKKS_					0	0	0		tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1	tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1	tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.304931640625	2	531.303124	1060.5917	0.12008	6.3797E-05	2.5068	0.0013319	2.6269	0.0013957	531.3043470685695	45.623	0.30334	45.623	45.512	45.816	0					36	17	3	0	0	0	0.22377	1	16971	16971		58.782	0	1	346600			28416	22783	19235	19306	28789	28789					0.06382315994369492
NPGQKGLGSPP	11	Unmodified	_NPGQKGLGSPP_					0	0	0		nc|ENSG00000150401|Q6PH85-2|DCUN1D2	nc|ENSG00000150401|Q6PH85-2|DCUN1D2	nc|ENSG00000150401|Q6PH85-2|DCUN1D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2796020507812	2	526.28018	1050.54581	0.62713	0.00033004	-0.15301	-8.0525E-05	0.47412	0.00024952	526.2800707397658	18.565	0.30374	18.565	18.522	18.826	0					16	10	2	0	0	0	0.65907	1	4643	4643		31.53	1.0262	1	671270			28417	11580	19236	19307	28790	28790					0.022556708121555857
NPHEVQPAY	9	Unmodified	_NPHEVQPAY_					0	0	0		ENST00000427525.2_1_15:85177687-85177801:+|nuORF;ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000135766|ENST00000366641|EGLN1	ENST00000427525.2_1_15:85177687-85177801:+|nuORF	ENST00000427525.2_1_15:85177687-85177801:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.751708984375	2	527.751256	1053.48796	0.10608	5.5986E-05	0.68626	0.00036217	0.79234	0.00041816	527.7516588652239	23.876	0.28528	23.876	23.721	24.006	0					13	6	3	0	0	0	0.40353	1	7955	7955		41.427	9.4718	1	466530			28418	4020	19237	19308	28791	28791					-0.03664591113283677
NPHEVQPSY	9	Unmodified	_NPHEVQPSY_					0	0	0		EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant;ENSG00000129521|ENST00000250457|EGLN3	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7490844726562	2	535.748713	1069.48287	0.18614	9.9722E-05	0.43715	0.0002342	0.62329	0.00033393	535.7490622753495	23.562	0.49142	23.562	23.34	23.832	0					31	11	4	0	0	0	0.10915	1	7788	7788		77.318	27.782	1	2751400			28419	890	19238	19309	28792	28792					-0.04908894975892508
NPHEVQPSY	9	Unmodified	_NPHEVQPSY_					0	0	0		EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant;ENSG00000129521|ENST00000250457|EGLN3	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7486572265625	2	535.748713	1069.48287	1.827	0.00097883	-1.1882	-0.00063659	0.63879	0.00034223	535.7478377940798	23.504	0.26724	23.504	23.344	23.612	0					20	5	5	0	0	0	0.24334	1	8097	8097		56.434	14.038	1	1104700			28420	890	19238	19309	28793	28793					-0.04908894975892508
NPHEVQPSY	9	Unmodified	_NPHEVQPSY_					0	0	0		EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant;ENSG00000129521|ENST00000250457|EGLN3	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7490844726562	2	535.748713	1069.48287	0.2917	0.00015628	0.21138	0.00011325	0.50308	0.00026952	535.7489627679487	23.487	0.26742	23.487	23.378	23.646	0					11	5	3	0	0	0	0.40353	1	8089	8089		41.427	7.9336	1	293750			28421	890	19238	19309	28794	28794					-0.04908894975892508
NPHEVQPSY	9	Unmodified	_NPHEVQPSY_					0	0	0		EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant;ENSG00000129521|ENST00000250457|EGLN3	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	EGLN3|p.A203T|1|0.27|ENSG00000129521|chr14:33929083-33929083|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7489624023438	2	535.748713	1069.48287	-1.3765	-0.00073746	1.59	0.00085185	0.21352	0.0001144	535.7495532924606	23.334	0.32621	23.334	23.188	23.514	0					18	7	4	0	0	0	0.095583	1	7092	7092		80.455	30.919	1	736450			28422	890	19238	19309	28795	28795					-0.04908894975892508
NPHLSDVQF	9	Unmodified	_NPHLSDVQF_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4;SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2609252929688	2	528.759081	1055.50361	1.204	0.00063663	-0.027128	-1.4344E-05	1.1769	0.00062229	529.2602418731634	28.276	0.22925	28.276	28.188	28.417	0					10	7	2	0	0	0	0.57706	1	8821	8821		24.203	0	1	144630			28423	7277	19239	19310	28796	28796					-0.021923045962239485
NPHNDIQAF	9	Unmodified	_NPHNDIQAF_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.2495727539062	2	528.24888	1054.48321	0.53619	0.00028324	-0.038671	-2.0428E-05	0.49752	0.00026281	528.2489255558611	29.961	0.1627	29.961	29.861	30.024	0					9	6	2	0	0	0	0.39215	1	9502	9502		42.396	1.8235	1	84041			28424	2680;6204	19240	19311	28797	28797					-0.04185475256031168
NPHNGQVSY	9	Unmodified	_NPHNGQVSY_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2334289550781	2	508.23323	1014.45191	-0.026618	-1.3528E-05	0.53333	0.00027105	0.50671	0.00025753	508.23349322479845	20.559	0.19098	20.559	20.464	20.655	0					7	4	2	0	0	0	0.16524	1	6409	6409		65.803	5.5092	1	425340			28425	2304	19241	19312	28798	28798					-0.054740482901365795
NPHQQYSVY	9	Unmodified	_NPHQQYSVY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.263427734375	2	568.261988	1134.50942	1.1644	0.00066166	0.75333	0.00042809	1.9177	0.0010897	568.2625426827952	26.73	0.20126	26.73	26.649	26.85	0					10	7	2	0	0	0	0.47038	1	8160	8160		35.618	7.5368	1	58313			28426	5425	19242	19313	28799	28799					-0.052452060845553206
NPHQQYSVY	9	Unmodified	_NPHQQYSVY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.2620239257812	2	568.261988	1134.50942	0.14591	8.2917E-05	-0.16079	-9.1369E-05	-0.014873	-8.4518E-06	568.2617266525972	26.964	0.33334	26.964	26.875	27.209	0					20	8	3	0	0	0	0.055856	1	9356	9356		93.195	36.474	1	428250			28427	5425	19242	19313	28800	28800					-0.052452060845553206
NPHQQYSVY	9	Unmodified	_NPHQQYSVY_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.2620849609375	2	568.261988	1134.50942	-1.2647	-0.00071868	1.7211	0.00097804	0.45641	0.00025936	568.2628669952501	26.813	0.14536	26.813	26.721	26.866	0					5	3	2	0	0	0	0.16002	1	8700	8700		66.429	18.514	1	48058			28428	5425	19242	19313	28801	28801					-0.052452060845553206
NPHSQGLVTF	10	Unmodified	_NPHSQGLVTF_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.280029296875	2	550.28018	1098.54581	0.54801	0.00030156	-0.51271	-0.00028213	0.035299	1.9424E-05	550.2797703455839	36.055	0.3163	36.055	35.93	36.247	0					31	8	5	0	0	0	0.3337	1	13540	13540		63.534	4.7519	1	2783900			28429	6005	19243	19314	28802	28802					0.0004767081213685742
NPHSQGLVTF	10	Unmodified	_NPHSQGLVTF_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.280517578125	2	550.28018	1098.54581	-0.33487	-0.00018427	0.75165	0.00041362	0.41678	0.00022935	550.2804803180103	35.814	0.29814	35.814	35.725	36.023	0					31	14	3	0	0	0	0.50881	1	12101	12101		44.377	0.26039	1	470490			28430	6005	19243	19314	28803	28803					0.0004767081213685742
NPHSQGLVTF	10	Unmodified	_NPHSQGLVTF_					0	0	0		TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;TMC4|p.F240Lfs*221|1|0.42|ENSG00000167608|chr19:54168267-54168268|AA/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2800903320312	2	550.28018	1098.54581	0.19174	0.00010551	0.16289	8.9634E-05	0.35463	0.00019514	550.280144280246	36.053	0.33235	36.053	35.91	36.242	0					34	10	4	0	0	0	0.12383	1	13987	13987		91.265	3.5688	1	2565900			28431	6005	19243	19314	28804	28804					0.0004767081213685742
NPIDHVSFY	9	Unmodified	_NPIDHVSFY_					0	0	0		ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.2616577148438	2	546.261456	1090.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.488	1	41.488	40.988	41.988	0								0	0	0	0.21054	1	13779	13779		49.442	8.8689	1				28432	2111	19244	19315	28805	28805					-0.03327420453456398
NPIGAVTK	8	Unmodified	_NPIGAVTK_					0	0	0			REV__ENST00000603552.1_1_9:20881907-20885147:+|nuORF	REV__ENST00000603552.1_1_9:20881907-20885147:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.23724365234375	2	400.237253	798.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.696	1	21.696	21.196	22.196	0								0	0	0	1.7419	1	6016	6016		42.396	3.59	1		+		28433	17170	19245	19316	28806	28806					0.05266130697293647
NPIGDTGVKF	10	Unmodified	_NPIGDTGVKF_					0	0	0		nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2783203125	2	524.277106	1046.53966	1.0147	0.00053198	-0.5504	-0.00028856	0.46429	0.00024342	524.2770071010567	37.141	0.15619	37.141	37.095	37.251	0					6	4	2	0	0	0	0.39827	1	14516	14516		56.434	22.512	1	38382			28434	6009	19246	19317	28807	28807					0.018251525806363134
NPISGLGGTKY	11	Unmodified	_NPISGLGGTKY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7944946289062	2	553.795663	1105.57677	1.819	0.0010074	-2.5944	-0.0014368	-0.77536	-0.00042939	553.7939339555952	33.887	0.18904	33.887	33.782	33.971	0					11	5	3	0	0	0	0.16013	1	12566	12566		79.07	23.566	1	216800			28435	2926	19247	19318	28808	28808					0.028208241263882883
NPISGLGGTKY	11	Unmodified	_NPISGLGGTKY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7966918945312	2	553.795663	1105.57677	0.92679	0.00051325	0.71866	0.00039799	1.6455	0.00091124	553.7959508609862	33.823	0.32274	33.823	33.65	33.973	0					18	7	4	0	0	0	0.024591	1	12904	12904		117.71	44.826	1	253540			28436	2926	19247	19318	28809	28809					0.028208241263882883
NPITVQTVY	9	Unmodified	_NPITVQTVY_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7792358398438	2	517.779482	1033.54441	1.3141	0.0006804	-1.0154	-0.00052577	0.29864	0.00015463	517.7790646620934	41.314	0.23072	41.314	41.187	41.418	0					28	11	3	0	0	0	0.17854	1	15677	15677		64.207	5.4253	1	297180			28437	7299	19248	19319	28810	28810					0.028980367233771176
NPITVQTVY	9	Unmodified	_NPITVQTVY_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.78076171875	2	517.779482	1033.54441	1.0141	0.00052508	0.77712	0.00040238	1.7912	0.00092745	517.7797926862565	41.244	0.18118	41.244	41.172	41.353	0					18	8	3	0	0	0	0.28897	1	16212	16212		51.193	15.574	1	208800			28438	7299	19248	19319	28811	28811					0.028980367233771176
NPITVQTVY	9	Unmodified	_NPITVQTVY_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7794799804688	2	517.779482	1033.54441	0.23529	0.00012183	-0.35183	-0.00018217	-0.11654	-6.0341E-05	517.7791193258676	41.206	0.43272	41.206	41.074	41.506	0					18	10	2	0	0	0	0.055856	1	16384	16384		93.195	21.9	1	521400			28439	7299	19248	19319	28812	28812					0.028980367233771176
NPKIFFSP	8	Unmodified	_NPKIFFSP_					0	0	0		ENST00000599829.1_1_19:59068052-59068363:-|nuORF	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2612609863281	2	475.260728	948.506903	-0.43455	-0.00020653	1.2073	0.00057376	0.77271	0.00036724	475.26142815076736	11.625	0.24035	11.625	11.413	11.653	0					19	9	3	0	0	0	0.78999	1	2271	2271		13.775	0.81615	1	180410			28440	11030	19249	19320	28813	28813					0.030589902484166487
NPLAATHEF	9	Unmodified	_NPLAATHEF_					0	0	0		ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant	ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2483215332031	2	500.248349	998.482145	0.66009	0.00033021	-0.76487	-0.00038263	-0.10478	-5.2418E-05	500.2479867129083	33.584	0.33647	33.584	33.415	33.752	0					16	8	2	0	0	0	0.19605	1	12464	12464		62.107	30.153	1	232060			28441	2022	19250	19321	28814	28814					-0.017156896249616693
NPLAATHEF	9	Unmodified	_NPLAATHEF_					0	0	0		ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant	ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2482604980469	2	500.248349	998.482145	0.0066697	3.3365E-06	-0.35358	-0.00017688	-0.34691	-0.00017354	500.24823665247396	33.625	0.3005	33.625	33.402	33.702	0					14	7	2	0	0	0	0.07136	1	12854	12854		87.696	50.537	1	217100			28442	2022	19250	19321	28815	28815					-0.017156896249616693
NPLAATHEF	9	Unmodified	_NPLAATHEF_					0	0	0		ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant	ZC3H7B|p.G531Vfs*13|1|0.19|ENSG00000100403|chr22:41346130-41346130|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2480773925781	2	500.248349	998.482145	-0.66347	-0.0003319	0.16966	8.4871E-05	-0.49381	-0.00024703	500.2482970731588	33.528	0.3681	33.528	33.348	33.716	0					17	7	3	0	0	0	0.025517	1	12735	12735		113.41	55.6	1	392140			28443	2022	19250	19321	28816	28816					-0.017156896249616693
NPLEETSAL	9	Unmodified	_NPLEETSAL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.24517822265625	2	487.245472	972.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.443	1	40.443	39.943	40.943	0								0	0	0	0.17378	1	13536	13536		54.776	0	1				28444	6636	19251	19322	28817	28817					-0.010948329272878254
NPLEETSAL	9	Unmodified	_NPLEETSAL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2456970214844	2	487.245472	972.476391	-0.53829	-0.00026228	0.26481	0.00012903	-0.27348	-0.00013325	487.24550646905726	40.679	0.60051	40.679	40.359	40.959	0					21	11	3	0	0	0	0.13267	1	16100	16100		71.877	16.373	1	578850			28445	6636	19251	19322	28818	28818					-0.010948329272878254
NPLKGDLANTF	11	Unmodified	_NPLKGDLANTF_					0	0	0		nc|ENSG00000138085|Q6UW56-2|ATRAID;ENSG00000138085|ENST00000380171|ATRAID;nc|ENSG00000138085|Q6UW56-3|ATRAID	nc|ENSG00000138085|Q6UW56-2|ATRAID	nc|ENSG00000138085|Q6UW56-2|ATRAID	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.3145751953125	2	595.31422	1188.61389	1.6773	0.00099849	-0.9529	-0.00056728	0.72435	0.00043121	595.3135876823467	39.788	0.28252	39.788	39.643	39.926	0					12	6	3	0	0	0	0.0073817	1	15765	15765		120.27	82.461	1	233870			28446	4227	19252	19323	28819	28819					0.02712495672130899
NPLPKQPLT	9	Unmodified	_NPLPKQPLT_					0	0	0			REV__nc|ENSG00000197603|Q9H799|CPLANE1	REV__nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5340576171875	3	336.53432	1006.58113	0.24136	8.1226E-05	-0.53401	-0.00017971	-0.29264	-9.8485E-05	336.53416572153844	35.619	0.47768	35.619	35.381	35.859	0					46	24	2	0	0	0	0.51817	1	11695	11695		23.523	0	1	91136	+		28447	17347	19253	19324	28820	28820					0.0781033333993264
NPLQKDPQY	9	Unmodified	_NPLQKDPQY_					0	0	0		PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant;nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7803955078125	2	551.780013	1101.54547	1.3108	0.00072326	-0.81278	-0.00044847	0.498	0.00027479	552.2811123587453	26.219	0.22416	26.219	26.104	26.328	0					13	7	3	0	0	0	0.021015	1	7920	7920		104.06	47.336	1	123130			28448	2931	19254	19325	28821	28821					-0.0012374890770843194
NPLQKDPQY	9	Unmodified	_NPLQKDPQY_					0	0	0		PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant;nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7803344726562	2	551.780013	1101.54547	0.59181	0.00032655	0.58379	0.00032212	1.1756	0.00064867	551.7803030238731	26.444	0.3525	26.444	26.276	26.628	0					19	8	3	0	0	0	0.0037134	1	9113	9113		136.27	74.161	1	637300			28449	2931	19254	19325	28822	28822					-0.0012374890770843194
NPLQKDPQY	9	Unmodified	_NPLQKDPQY_					0	0	0		PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant;nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.7799682617188	2	551.780013	1101.54547	0.26363	0.00014546	-0.078618	-4.338E-05	0.18501	0.00010208	551.7798739540574	26.214	0.22915	26.214	26.057	26.286	0					14	7	3	0	0	0	0.017741	1	8194	8194		120.87	80.09	1	160260			28450	2931	19254	19325	28823	28823					-0.0012374890770843194
NPLQKDPQY	9	Unmodified	_NPLQKDPQY_					0	0	0		PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant;nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7800903320312	2	551.780013	1101.54547	-1.3133	-0.00072468	1.7372	0.00095858	0.4239	0.0002339	551.7810151640984	26.284	0.31665	26.284	26.109	26.426	0					14	7	3	0	0	0	0.01942	1	8430	8430		106.68	28.419	1	181060			28451	2931	19254	19325	28824	28824					-0.0012374890770843194
NPLQKDPQY	9	Unmodified	_NPLQKDPQY_					0	0	0		PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant;nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	PPP1R7|p.R330W|1|0.49|ENSG00000115685|chr2:241182728-241182728|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7802734375	2	551.780013	1101.54547	3.6924	0.0020374	-2.5346	-0.0013985	1.1578	0.00063886	551.7781341403613	26.426	0.4185	26.426	26.218	26.637	0					17	8	3	0	0	0	0.00014666	1	9326	9326		176.44	104.57	1	1244000			28452	2931	19254	19325	28825	28825					-0.0012374890770843194
NPNAAAQVL	9	Unmodified	_NPNAAAQVL_					0	0	0		ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.24322509765625	2	449.243067	896.47158	0.13389	6.0149E-05	-0.49351	-0.0002217	-0.35962	-0.00016156	449.2429193259818	33.733	0.19904	33.733	33.67	33.869	0					8	5	2	0	0	0	0.14603	1	12527	12527		68.787	26.312	1	39973			28453	3944	19255	19326	28826	28826					0.019203277206202074
NPNEEVARF	9	Unmodified	_NPNEEVARF_					0	0	0		ENSG00000165457|ENST00000298223|FOLR2;ENSG00000110195|ENST00000393676|FOLR1	ENSG00000165457|ENST00000298223|FOLR2	ENSG00000165457|ENST00000298223|FOLR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2628784179688	2	538.261988	1074.50942	0.69349	0.00037328	0.88854	0.00047827	1.582	0.00085155	538.2623932434873	29.956	0.11781	29.956	29.896	30.014	0					4	2	2	0	0	0	0.076532	1	11045	11045		85.862	41.485	1	321530			28454	5796	19256	19327	28827	28827					-0.024852060845660162
NPNSGDFRF	9	Unmodified	_NPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2412719726562	2	527.241055	1052.46756	0.94268	0.00049702	0.76949	0.00040571	1.7122	0.00090273	527.2412782635258	35.767	0.2206	35.767	35.648	35.869	0					11	6	2	0	0	0	0.02429	1	13875	13875		114.89	56.665	1	122170			28455	3712	19257	19328	28828	28828					-0.05657761773113634
NPNSPSITY	9	Unmodified	_NPNSPSITY_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7373352050781	2	496.737814	991.461075	0.7173	0.00035631	-0.93718	-0.00046553	-0.21989	-0.00010923	496.7373390871055	34.22	0.43776	34.22	34.067	34.505	0					24	11	4	0	0	0	0.19605	1	12706	12706		62.107	6.6032	1	584900			28456	2052	19258	19329	28829	28829					-0.03499699724488892
NPNSPSITY	9	Unmodified	_NPNSPSITY_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7374572753906	2	496.737814	991.461075	-0.031536	-1.5665E-05	-0.2841	-0.00014112	-0.31563	-0.00015679	496.73761817525934	34.233	0.49113	34.233	34.06	34.552	0					30	12	4	0	0	0	0.12239	1	13130	13130		74.255	10.949	1	1212200			28457	2052	19258	19329	28830	28830					-0.03499699724488892
NPPVPVRL	8	Unmodified	_NPPVPVRL_					0	0	0			REV__ARHGEF1|p.L344Wfs*12|2|0.31|ENSG00000076928|chr19:41896386-41896386|C/-|frameshift_variant	REV__ARHGEF1|p.L344Wfs*12|2|0.31|ENSG00000076928|chr19:41896386-41896386|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.27392578125	2	446.27417	890.533787	-1.1672	-0.00052087	0.51299	0.00022893	-0.65417	-0.00029194	446.2744015943111	28.717	0.20919	28.717	28.621	28.83	0					14	8	2	0	0	0	0.77246	1	9288	9288		24.203	3.2558	1	100010	+		28458	12208	19259	19330	28831	28831					0.08414098859600472
NPQIWIAVV	9	Unmodified	_NPQIWIAVV_					0	0	0			REV__ENST00000448312.2_1_2:42047360-42047405:+|nuORF	REV__ENST00000448312.2_1_2:42047360-42047405:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.2048034667969	3	347.202682	1038.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.91	1	42.91	42.41	43.41	0								0	0	0	0.38667	1	16228	16228		14.865	2.0532	1		+		28459	19297	19260	19331	28832	28832					0.06846637202556849
NPQNAEVFY	9	Unmodified	_NPQNAEVFY_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.25341796875	2	541.251089	1080.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.257	1	34.257	33.757	34.757	0								0	0	0	0.16876	1	12109	12109		55.504	4.1688	1				28460	3875	19261	19332	28833	28833					-0.04940010833138331
NPQVNEPLP	9	Unmodified	_NPQVNEPLP_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2620544433594	2	504.261456	1006.50836	0.094808	4.7808E-05	1.5207	0.00076681	1.6155	0.00081461	504.2618106742515	35.861	0.14561	35.861	35.828	35.973	0					7	4	2	0	0	0	0.3269	1	13938	13938		40.778	5.6261	1	58942			28461	22939	19262	19333	28834	28834					0.005365795465081646
NPRHKITKR	9	Unmodified	_NPRHKITKR_					0	0	0		nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.3529663085938	2	575.351806	1148.68906	3.3188	0.0019095	-1.105	-0.00063579	2.2137	0.0012737	575.3511220666219	19.268	0.86536	19.268	19.162	20.027	0					50	17	4	0	0	0	0.13267	1	5934	5934		71.877	18.941	1	23234000			28462	11808	19263	19334	28835	28835					0.12066142713888439
NPSGNLTETY	10	Unmodified	_NPSGNLTETY_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2515869140625	2	548.251286	1094.48802	1.6372	0.0008976	-0.31824	-0.00017448	1.319	0.00072313	548.250957766124	32.983	0.11744	32.983	32.938	33.055	0					9	5	2	0	0	0	0.4758	1	10700	10700		47.96	2.0076	1	47651			28463	7403	19264	19335	28836	28836					-0.05544635903925155
NPSGNLTETY	10	Unmodified	_NPSGNLTETY_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2516479492188	2	548.251286	1094.48802	1.8481	0.0010132	-1.0094	-0.0005534	0.83874	0.00045984	548.2507100192228	33.264	0.24302	33.264	33.147	33.39	0					10	6	2	0	0	0	0.16745	1	12280	12280		83.647	32.454	1	273660			28464	7403	19264	19335	28837	28837					-0.05544635903925155
NPSGNLTETY	10	Unmodified	_NPSGNLTETY_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2520751953125	2	548.251286	1094.48802	0.64367	0.00035289	1.1813	0.00064766	1.825	0.0010006	548.2517622249093	33.24	0.26696	33.24	33.151	33.418	0					13	6	3	0	0	0	0.4758	1	12699	12699		47.96	17.642	1	195050			28465	7403	19264	19335	28838	28838					-0.05544635903925155
NPSGNLTETY	10	Unmodified	_NPSGNLTETY_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2522583007812	2	548.251286	1094.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.031	1	33.031	32.531	33.531	0								0	0	0	0.24873	1	11552	11552		58.23	10.314	1				28466	7403	19264	19335	28839	28839					-0.05544635903925155
NPSGNLTETY	10	Unmodified	_NPSGNLTETY_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2515258789062	2	548.251286	1094.48802	0.51582	0.0002828	0.79668	0.00043678	1.3125	0.00071958	548.2518639643241	33.206	0.30802	33.206	33.107	33.415	0					13	6	3	0	0	0	0.056886	1	12589	12589		107.01	16.638	1	451350			28467	7403	19264	19335	28840	28840					-0.05544635903925155
NPSSNFESM	9	Unmodified	_NPSSNFESM_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7054443359375	2	506.705657	1011.39676	0.14883	7.5412E-05	0.09776	4.9536E-05	0.24659	0.00012495	506.70544878332265	35.361	0.18684	35.361	35.29	35.477	0					7	5	2	0	0	0	0.17854	1	13694	13694		64.207	7.4862	1	123900			28468	3393	19265	19336	28841	28841					-0.10848222872914448
NPTLHFGNN	9	Unmodified	_NPTLHFGNN_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.49798583984375	3	338.498157	1012.47264	0.23078	7.8117E-05	-0.51921	-0.00017575	-0.28844	-9.7635E-05	338.497954620904	22.125	0.34468	22.125	22.012	22.357	0					21	10	4	0	0	0	0.48623	1	6198	6198		33.922	7.2287	1	1964200			28469	4857	19266	19337	28842	28842					-0.033094579104840705
NPTSSSEFY	9	Unmodified	_NPTSSSEFY_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant;AMOT|p.P239Hfs*14|2|0.34|ENSG00000126016|chrX:112822411-112822411|G/-|frameshift_variant;AMOT|p.S319Pfs*56|1|0.11|ENSG00000126016|chrX:112815796-112815796|C/-|frameshift_variant;AMOT|p.Q392Lfs*49|1|0.09|ENSG00000126016|chrX:112815575-112815576|-/TCCA|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.220947265625	2	516.219454	1030.42436	0.87212	0.0004502	1.9362	0.00099952	2.8083	0.0014497	516.220715616055	35.955	0.83535	35.955	35.684	36.52	0					25	17	3	0	0	0	0.16002	1	13971	13971		66.429	3.4509	1	320870			28470	3459	19267	19338	28843	28843					-0.08963996341026359
NPVDWKEQY	9	Unmodified	_NPVDWKEQY_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.7791137695312	2	589.77747	1177.54039	1.5224	0.0008979	0.25571	0.00015081	1.7781	0.0010487	589.7774635566958	34.376	0.082386	34.376	34.344	34.426	0					8	4	2	0	0	0	0.28897	1	11235	11235		51.193	17.02	1	35858			28471	2439	19268	19339	28844	28844					-0.041280527703293046
NPVDWKEQY	9	Unmodified	_NPVDWKEQY_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.7769775390625	2	589.77747	1177.54039	0.99873	0.00058903	-0.6853	-0.00040417	0.31343	0.00018486	589.7772192496794	34.648	0.2504	34.648	34.533	34.783	0					14	6	3	0	0	0	0.015496	1	12901	12901		129.42	78.086	1	195360			28472	2439	19268	19339	28845	28845					-0.041280527703293046
NPVDWKEQY	9	Unmodified	_NPVDWKEQY_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.2791748046875	2	589.77747	1177.54039	1.3143	0.00077517	-0.34611	-0.00020413	0.96824	0.00057105	589.7769349052493	34.645	0.16089	34.645	34.585	34.746	0					6	4	2	0	0	0	0.037924	1	13372	13372		101.25	55.28	1	61739			28473	2439	19268	19339	28846	28846					-0.041280527703293046
NPVDWKEQY	9	Unmodified	_NPVDWKEQY_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.7783813476562	2	589.77747	1177.54039	0.093278	5.5013E-05	0.5661	0.00033387	0.65938	0.00038889	589.7778044794916	34.598	0.2606	34.598	34.489	34.75	0					11	5	3	0	0	0	0.015992	1	13267	13267		128.6	67.63	1	332990			28474	2439	19268	19339	28847	28847					-0.041280527703293046
NPVEDKDAVAF	11	Unmodified	_NPVEDKDAVAF_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.7958984375	2	602.79586	1203.57717	0.45498	0.00027426	-0.49933	-0.00030099	-0.044355	-2.6737E-05	602.7955345194221	34.775	0.59062	34.775	34.612	35.203	0					47	15	5	0	0	0	0.0092585	1	12957	12957		125.68	85.624	1	6406700			28475	1748	19269	19340	28848	28848					-0.01647800944442679
NPVEDKDAVAF	11	Unmodified	_NPVEDKDAVAF_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.7962036132812	2	602.79586	1203.57717	-0.32432	-0.0001955	1.0994	0.00066271	0.77507	0.00046721	602.7961746633739	34.769	0.27461	34.769	34.68	34.954	0					16	7	3	0	0	0	0.098165	1	12990	12990		90.149	35.373	1	226950			28476	1748	19269	19340	28849	28849					-0.01647800944442679
NPVEDKDAVAF	11	Unmodified	_NPVEDKDAVAF_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.7957153320312	2	602.79586	1203.57717	0.45741	0.00027573	-0.40986	-0.00024706	0.047554	2.8665E-05	602.7956358181522	34.57	0.34063	34.57	34.462	34.803	0					29	10	4	0	0	0	0.15663	1	12222	12222		79.489	44.337	1	1301300			28477	1748	19269	19340	28850	28850					-0.01647800944442679
NPVEDKDAVAF	11	Unmodified	_NPVEDKDAVAF_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000079385|ENST00000161559|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-3|CEACAM1;CEACAM6|p.I217Mfs*11|3|0.07|ENSG00000086548|chr19:41761474-41761475|-/G|frameshift_variant;ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.7958374023438	2	602.79586	1203.57717	0.040317	2.4303E-05	0.51886	0.00031277	0.55918	0.00033707	602.796109644417	34.742	0.40922	34.742	34.589	34.998	0					13	8	2	0	0	0	0.080725	1	13332	13332		94.409	32.718	1	872820			28478	1748	19269	19340	28851	28851					-0.01647800944442679
NPVELKALY	9	Unmodified	_NPVELKALY_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7979125976562	2	523.797675	1045.5808	1.7605	0.00092215	-0.94153	-0.00049317	0.81897	0.00042897	523.7972504231794	40.107	0.22044	40.107	40.012	40.232	0					19	8	3	0	0	0	0.020674	1	15282	15282		120.87	64.147	1	497690			28479	11514;854	19270	19341	28852	28852					0.05982913620096042
NPVELKALY	9	Unmodified	_NPVELKALY_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7979125976562	2	523.797675	1045.5808	0.49544	0.00025951	0.25473	0.00013343	0.75017	0.00039294	523.7977141893899	40.026	0.39993	40.026	39.883	40.283	0					15	9	3	0	0	0	0.003936	1	15871	15871		163.15	69.955	1	909440			28480	11514;854	19270	19341	28853	28853					0.05982913620096042
NPVELKALY	9	Unmodified	_NPVELKALY_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.798095703125	2	523.797675	1045.5808	1.6259	0.00085164	-0.51198	-0.00026817	1.1139	0.00058346	523.7972594046691	40.04	0.35505	40.04	39.912	40.268	0					12	8	3	0	0	0	0.013878	1	15865	15865		132.76	68.551	1	562350			28481	11514;854	19270	19341	28854	28854					0.05982913620096042
NPVHALVL	8	Unmodified	_NPVHALVL_					0	0	0		ENST00000420027.3_1_20:48698052-48698115:-|nuORF	ENST00000420027.3_1_20:48698052-48698115:-|nuORF	ENST00000420027.3_1_20:48698052-48698115:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.7608642578125	2	431.760895	861.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.73	1	38.73	38.23	39.23	0								0	0	0	1.7419	1	12621	12621		39.021	1.993	1				28482	9390	19271	19342	28855	28855					0.07094409968271975
NPVNYGRPY	9	Unmodified	_NPVNYGRPY_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2670288085938	2	540.267073	1078.51959	1.4457	0.00078105	-0.80241	-0.00043351	0.64327	0.00034754	540.2665327486109	27.972	0.24899	27.972	27.863	28.112	0					10	5	2	0	0	0	0.071197	1	10204	10204		87.754	20.261	1	201130			28483	1007	19272	19343	28856	28856					-0.01652598359351032
NPVQPINDM	9	Unmodified	_NPVQPINDM_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2474975585938	2	514.247492	1026.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.703	1	36.703	36.203	37.203	0								0	0	0	0.25587	1	13863	13863		42.864	5.7052	1				28484	4144	19273	19344	28857	28857					-0.03175066705216523
NPVVLKTK	8	Unmodified	_NPVVLKTK_					0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.7890625	2	449.789653	897.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.567	1	43.567	43.067	44.067	0								0	0	0	1.7419	1	17436	17436		25.45	4.5032	1		+		28485	16978	19274	19345	28858	28858					0.11187252173863271
NPVVRSKS	8	Unmodified	_NPVVRSKS_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7587585449219	2	443.758884	885.503215	-0.087648	-3.8895E-05	-0.12938	-5.7411E-05	-0.21702	-9.6306E-05	443.75878989389633	26.568	0.23708	26.568	26.465	26.702	0					11	5	3	0	0	0	0.66372	1	9186	9186		38.806	4.6336	1	100910			28486	7155	19275	19346	28859	28859					0.05588320474578268
NPWDNKAVY	9	Unmodified	_NPWDNKAVY_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64898917-64899817:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7681274414062	2	553.766906	1105.51926	0.49914	0.00027641	0.35677	0.00019757	0.85591	0.00047398	553.7671062360643	36.223	0.76665	36.223	35.963	36.729	0					54	22	4	0	0	0	0.30841	2	14027	14027;14198		49.536	20.522	1	1031000			28487	5451	19276	19347	28860;28861	28860					-0.029280180792056854
NPWDNKAVY	9	Unmodified	_NPWDNKAVY_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64898917-64899817:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.7672119140625	2	553.766906	1105.51926	1.1397	0.00063113	0.72093	0.00039923	1.8606	0.0010304	553.7671882347432	35.988	0.46689	35.988	35.834	36.301	0					34	17	3	0	0	0	0.27249	1	12838	12838		52.937	15.778	1	216480			28488	5451	19276	19347	28862	28862					-0.029280180792056854
NPWDNKAVY	9	Unmodified	_NPWDNKAVY_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64898917-64899817:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7666015625	2	553.766906	1105.51926	0.92042	0.0005097	-0.30586	-0.00016937	0.61456	0.00034032	553.7667375585401	36.141	1.1092	36.141	35.931	37.04	0					52	22	4	0	0	0	0.16806	2	13959	13959;14150		65.465	23.069	1	2807300			28489	5451	19276	19347	28863;28864	28863					-0.029280180792056854
NPWDNKAVY	9	Unmodified	_NPWDNKAVY_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;SYVN1|p.N368Tfs*117|1|0.4|ENSG00000162298|chr11:65130664-65130664|G/-|frameshift_variant;SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64898917-64899817:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7672729492188	2	553.766906	1105.51926	1.8198	0.0010078	-0.8429	-0.00046677	0.97691	0.00054098	553.7663568063947	36.124	1.109	36.124	35.914	37.023	0					42	22	3	0	0	0	0.026538	1	13994	13994		112.41	68.294	1	2341400			28490	5451	19276	19347	28865	28865					-0.029280180792056854
NPYPGDVTKF	10	Unmodified	_NPYPGDVTKF_					0	0	0		ENSG00000137073|ENST00000379238|UBAP2;nc|ENSG00000137073|Q5T6F2-2|UBAP2	ENSG00000137073|ENST00000379238|UBAP2	ENSG00000137073|ENST00000379238|UBAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2816772460938	2	569.282389	1136.55022	0.36787	0.00020942	-0.25654	-0.00014604	0.11133	6.3379E-05	569.2821777757935	36.222	0.36482	36.222	36.03	36.395	0					13	7	2	0	0	0	0.18316	1	14027	14027		81.525	38.661	1	115090			28491	4143	19277	19348	28866	28866					-0.012588647649408813
NPYRDLQIY	9	Unmodified	_NPYRDLQIY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.V213Wfs*56|1|0.56|ENSG00000197879|chr17:1480877-1480877|G/-|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.3011474609375	2	591.301113	1180.58767	1.5094	0.00089253	3.5204	0.0020816	5.0299	0.0029742	591.3001645524276	39.918	0.43941	39.918	39.763	40.203	0					48	15	4	0	0	0	0.11898	1	15725	15725		75.043	18.322	1	682210			28492	7501	19278	19349	28867	28867					0.004602265006724338
NPYRDLQIY	9	Unmodified	_NPYRDLQIY_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.V213Wfs*56|1|0.56|ENSG00000197879|chr17:1480877-1480877|G/-|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.3010864257812	2	591.301113	1180.58767	1.3478	0.00079694	1.8215	0.0010771	3.1693	0.001874	591.3004826217442	39.913	0.53305	39.913	39.734	40.268	0					39	12	4	0	0	0	0.035062	1	15800	15800		104.06	43.939	1	1585100			28493	7501	19278	19349	28868	28868					0.004602265006724338
NPYSGDLTKF	10	Unmodified	_NPYSGDLTKF_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.2796630859375	2	571.279846	1140.54514	1.7482	0.0009987	-0.73929	-0.00042234	1.0089	0.00057635	571.279390124478	38.76	0.20305	38.76	38.648	38.851	0					16	8	3	0	0	0	0.18316	1	14714	14714		81.525	42.272	1	147120			28494	4567	19279	19350	28869	28869					-0.019511686275791362
NPYSGDLTKF	10	Unmodified	_NPYSGDLTKF_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.2801513671875	2	571.279846	1140.54514	0.89309	0.00051021	0.015972	9.1244E-06	0.90906	0.00051933	571.2796328580954	38.687	0.1756	38.687	38.601	38.777	0					11	6	2	0	0	0	0.46192	1	15184	15184		49.466	11.654	1	66321			28495	4567	19279	19350	28870	28870					-0.019511686275791362
NPYSGDLTKF	10	Unmodified	_NPYSGDLTKF_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2805786132812	2	571.279846	1140.54514	0.16333	9.3309E-05	0.7697	0.00043972	0.93304	0.00053303	571.2803146786475	38.703	0.31292	38.703	38.543	38.856	0					15	6	3	0	0	0	0.01554	1	15224	15224		128.35	80.388	1	397440			28496	4567	19279	19350	28871	28871					-0.019511686275791362
NPYSGDLTKF	10	Unmodified	_NPYSGDLTKF_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2803955078125	2	571.279846	1140.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.714	1	38.714	38.214	39.214	0								0	0	0	0.049082	1	15244	15244		91.265	29.158	1				28497	4567	19279	19350	28872	28872					-0.019511686275791362
NQAADDHAL	9	Unmodified	_NQAADDHAL_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7176818847656	2	477.717413	953.420273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.014	1	38.014	37.514	38.514	0								0	0	0	0.2591	1	14897	14897		42.396	3.3746	1				28498	3315	19280	19351	28873	28873					-0.05830041044112022
NQAAVQAVTTI	11	Unmodified	_NQAAVQAVTTI_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.3067016601562	2	558.306395	1114.59824	1.2917	0.00072114	-0.59319	-0.00033118	0.69847	0.00038996	558.306045223697	28.549	0.20176	28.549	28.459	28.661	0					20	9	3	0	0	0	0.44591	1	8916	8916		46.457	1.4346	1	269460	+		28499	21270	19281	19352	28874	28874					0.04552209155099263
NQAAVQAVTTI	11	Unmodified	_NQAAVQAVTTI_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.3068237304688	2	558.306395	1114.59824	0.53254	0.00029732	0.17135	9.5667E-05	0.70389	0.00039299	558.3064368530106	28.804	0.93522	28.804	28.591	29.527	0					42	23	4	0	0	0	0.092761	1	10208	10208		83.647	23.48	1	2327700	+		28500	21270	19281	19352	28875	28875					0.04552209155099263
NQAAVQAVTTI	11	Unmodified	_NQAAVQAVTTI_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.3059692382812	2	558.306395	1114.59824	-0.15064	-8.4104E-05	0.50771	0.00028346	0.35707	0.00019936	558.3066493144239	28.804	0.26481	28.804	28.695	28.96	0					16	5	4	0	0	0	0.24586	1	10585	10585		68.846	19.31	1	1262700	+		28501	21270	19281	19352	28876	28876					0.04552209155099263
NQCQTQLK	8	Unmodified	_NQCQTQLK_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.741943359375	2	481.739834	961.465115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.25	1	33.25	32.75	33.75	0								0	0	0	1.7419	1	12279	12279		52.299	4.3836	1				28502	6006	19282	19353	28877	28877					-0.01715933502396183
NQEEFLMKQMD	11	Unmodified	_NQEEFLMKQMD_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	706.8111572265625	2	706.81287	1411.61119	-2.4528	-0.0017337	0.12905	9.1216E-05	-2.3238	-0.0016425	706.8129856573765	18.042	0.46672	18.042	17.768	18.235	0					14	10	2	0	0	0	0.67178	1	4550	4550		30.318	8.632	1	1032200	+		28503	17632	19283	19354	28878	28878					-0.07815463839347103
NQEGATPVSL	10	Unmodified	_NQEGATPVSL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;AKAP13|p.T565Qfs*18|1|0.46|ENSG00000170776|chr15:85579756-85579756|A/-|frameshift_variant;AKAP13|p.F990Lfs*18|1|0.38|ENSG00000170776|chr15:85581035-85581038|CTTT/-|frameshift_variant;AKAP13|p.T1197Hfs*9|1|0.33|ENSG00000170776|chr15:85581652-85581653|-/C|frameshift_variant	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2582092285156	2	508.256371	1014.49819	-0.38844	-0.00019743	4.1701	0.0021195	3.7817	0.0019221	508.2590296927713	48.068	0.11884	48.068	47.961	48.08	0					10	7	2	0	0	0	0.50881	1	18246	18246		44.377	1.981	1	42863			28504	6257	19284	19355	28879	28879					-0.008480281787115018
NQEKHFYTF	9	Unmodified	_NQEKHFYTF_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.2860107421875	2	607.285463	1212.55637	-0.57032	-0.00034635	0.89749	0.00054503	0.32717	0.00019868	607.2860414314398	31.526	0.41997	31.526	31.402	31.822	0					21	10	3	0	0	0	0.067603	1	11494	11494		72.879	35.72	1	315110			28505	791	19285	19356	28880	28880					-0.041403465334497014
NQEKHFYTF	9	Unmodified	_NQEKHFYTF_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.2879028320312	2	607.285463	1212.55637	0.4906	0.00029794	-0.39103	-0.00023747	0.099572	6.0468E-05	607.2853347312881	31.547	0.34043	31.547	31.454	31.795	0					14	7	3	0	0	0	0.37744	1	11897	11897		44.377	10.456	1	249130			28506	791	19285	19356	28881	28881					-0.041403465334497014
NQEQFLLL	8	Unmodified	_NQEQFLLL_					0	0	0		COPS7A|p.A25Qfs*55|1|0.32|ENSG00000111652|chr12:6724725-6724725|G/-|frameshift_variant;COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A	COPS7A|p.A25Qfs*55|1|0.32|ENSG00000111652|chr12:6724725-6724725|G/-|frameshift_variant	COPS7A|p.A25Qfs*55|1|0.32|ENSG00000111652|chr12:6724725-6724725|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.77423095703125	2	502.7742	1003.53385	-0.90023	-0.00045261	0.65111	0.00032736	-0.24912	-0.00012525	502.77452800586633	34.85	0.54137	34.85	34.612	35.154	0					54	24	3	0	0	0	0.57171	1	11726	11726		42.396	6.7778	1	735100			28507	677	19286	19357	28882	28882					0.03222054068965008
NQERELKA	8	Unmodified	_NQERELKA_					0	0	0		tr|U7SPW7|U7SPW7_FUSNUChemotaxisproteinMotBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01670PE=4SV=1	tr|U7SPW7|U7SPW7_FUSNUChemotaxisproteinMotBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01670PE=4SV=1	tr|U7SPW7|U7SPW7_FUSNUChemotaxisproteinMotBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01670PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2645263671875	2	494.26453	986.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.331	1	23.331	22.831	23.831	0								0	0	0	1.7419	1	8024	8024		37.812	1.3648	1				28508	22700	19287	19358	28883	28883					0.020710977780368012
NQFPVWLS	8	Unmodified	_NQFPVWLS_					0	0	0			REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7547302246094	2	495.75581	989.497067	-0.062674	-3.1071E-05	-2.8152	-0.0013957	-2.8779	-0.0014267	495.75448247856275	28.819	0.22534	28.819	28.723	28.949	0					12	7	2	0	0	0	0.59411	1	9025	9025		50.025	2.3672	1	136010	+		28509	16898	19288	19359	28884	28884					0.0018980224305096272
NQFRFVGNA	9	Unmodified	_NQFRFVGNA_					0	0	0		ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.766357421875	2	526.76724	1051.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.471	1	36.471	35.971	36.971	0								0	0	0	0.1836	1	13759	13759		53.351	3.9099	1				28510	4563	19289	19360	28885	28885					-0.0037717863947364094
NQGFSEPEY	9	Unmodified	_NQGFSEPEY_					0	0	0		ADCY3|p.V415Cfs*27|1|0.38|ENSG00000138031|chr2:24839985-24839985|C/-|frameshift_variant;ENSG00000138031|ENST00000679454|ADCY3	ADCY3|p.V415Cfs*27|1|0.38|ENSG00000138031|chr2:24839985-24839985|C/-|frameshift_variant	ADCY3|p.V415Cfs*27|1|0.38|ENSG00000138031|chr2:24839985-24839985|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7255249023438	2	535.724904	1069.43525	-0.56201	-0.00030108	2.2118	0.0011849	1.6498	0.00088385	535.7258923248738	25.477	0.13897	25.477	25.429	25.568	0					10	5	2	0	0	0	0.35045	1	7944	7944		45.952	1.4209	1	147720			28511	68	19290	19361	28886	28886					-0.09668593966762273
NQGLGGTF	8	Unmodified	_NQGLGGTF_					0	0	0			REV__ENSG00000272391|ENST00000615331|POM121C	REV__ENSG00000272391|ENST00000615331|POM121C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.8788146972656	2	397.195585	792.376617	0.91469	0.00036331	-0.074239	-2.9487E-05	0.84045	0.00033382	397.1955155468539	16.914	0.17117	16.914	16.82	16.991	0					7	4	2	0	0	0	0.79882	1	4707	4707		19.36	4.6959	1	255160	+		28512	17812	19291	19362	28887	28887					-0.02787605750563671
NQGNWSEQN	9	Unmodified	_NQGNWSEQN_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7235717773438	2	538.723227	1075.4319	0.24155	0.00013013	0.55431	0.00029862	0.79586	0.00042875	538.7234879073927	18.424	0.60457	18.424	18.198	18.803	0					29	14	4	0	0	0	0.19605	1	5395	5395		62.107	7.3311	1	7606300			28513	2459	19292	19363	28888	28888					-0.1027984402076072
NQGQQQNME	9	Unmodified	_NQGQQQNME_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7236938476562	2	538.724912	1075.43527	-0.19858	-0.00010698	-2.1175	-0.0011407	-2.3161	-0.0012477	538.723654276339	18.153	0.17476	18.153	18.064	18.239	0					13	6	3	0	0	0	0.14603	1	4699	4699		68.787	8.6686	1	591490			28514	8083	19293	19364	28889	28889					-0.09942917238413429
NQGRRTVL	8	Unmodified	_NQGRRTVL_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2739562988281	2	472.275232	942.535912	2.4419	0.0011532	-4.4411	-0.0020974	-1.9992	-0.00094416	472.27319161817695	33.364	0.51646	33.364	33.167	33.684	0					28	10	4	0	0	0	0.3049	1	12671	12671		82.241	16.437	1	645210			28515	5783	19294	19365	28890	28890					0.06234527597405304
NQIAVLHTY	9	Unmodified	_NQIAVLHTY_					0	0	0			REV__SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant	REV__SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7872314453125	2	529.785099	1057.55564	0.4516	0.00023925	2.0238	0.0010722	2.4754	0.0013114	529.786910182291	26.165	0.43046	26.165	25.898	26.328	0					40	14	4	0	0	0	0.35045	1	7853	7853		45.952	0	1	467910	+		28516	12874	19295	19366	28891	28891					0.029168588175252808
NQIITIVP	8	Unmodified	_NQIITIVP_					0	0	0			REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2738342285156	2	449.273835	896.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.362	1	44.362	43.862	44.862	0								0	0	0	1.7419	1	15249	15249		33.516	5.6333	1		+		28517	18981	19296	19367	28892	28892					0.08071259419909893
NQILTKFYE	9	Unmodified	_NQILTKFYE_					0	0	0			REV__tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	REV__tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.3076171875	2	578.305864	1154.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.135	1	25.135	24.635	25.635	0								0	0	0	0.38913	1	7779	7779		14.137	0.68308	1		+		28518	21702	19297	19368	28893	28893					0.02605994786199517
NQKHRTSK	8	Unmodified	_NQKHRTSK_					0	0	0			REV__ENST00000460310.1_1_2:71658536-71660440:+|nuORF	REV__ENST00000460310.1_1_2:71658536-71660440:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.77899169921875	2	499.778139	997.541725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.336	1	26.336	25.836	26.836	0								0	0	0	1.7419	1	8270	8270		51.335	0.14276	1		+		28519	13229	19298	19369	28894	28894					0.04285626109083296
NQKIVNLKEK	10	Unmodified	_NQKIVNLKEK_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.24700927734375	3	405.24695	1212.71902	0.61693	0.00025001	-0.92714	-0.00037572	-0.31021	-0.00012571	405.2465608481851	17.527	0.2042	17.527	17.469	17.674	0					8	6	2	0	0	0	0.35046	1	4191	4191		61.691	4.5425	1	147060			28520	6306	19299	19370	28895	28895					0.12117036868539799
NQKKQNKNK	9	Unmodified	_NQKKQNKNK_					0	0	0		ENST00000226319.10_1_4:129795591-129795780:+|nuORF	ENST00000226319.10_1_4:129795591-129795780:+|nuORF	ENST00000226319.10_1_4:129795591-129795780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.3270263671875	2	565.325454	1128.63635	3.4713	0.0019624	-1.4545	-0.00082225	2.0168	0.0011402	565.3250178283325	26.527	0.42237	26.527	26.366	26.788	0					25	8	4	0	0	0	0.0051889	1	9369	9369		157.21	157.21	1	7731800			28521	8188	19300	19371	28896	28896					0.0771813986041252
NQKQRKPS	8	Unmodified	_NQKQRKPS_					0	0	0			REV__ENST00000515403.5_2_5:175602049-175603287:-|nuORF	REV__ENST00000515403.5_2_5:175602049-175603287:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.28155517578125	2	493.280515	984.546476	-0.070141	-3.4599E-05	3.1809	0.0015691	3.1108	0.0015345	493.28185889404205	34.16	0.13051	34.16	34.108	34.239	0					11	5	3	0	0	0	0.54629	1	11147	11147		55.504	4.1688	1	131120	+		28522	19911	19301	19372	28897	28897					0.05358510251858206
NQKSLAVIV	9	Unmodified	_NQKSLAVIV_					0	0	0			REV__nc|ENSG00000155085|Q5TCS8-6|AK9	REV__nc|ENSG00000155085|Q5TCS8-6|AK9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.29766845703125	2	486.297842	970.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.021	1	32.021	31.521	32.521	0								0	0	0	0.1836	1	11715	11715		53.351	7.3792	1		+		28523	21071	19302	19373	28898	28898					0.09466333339946686
NQLETAPPH	9	Unmodified	_NQLETAPPH_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7528076171875	2	503.751256	1005.48796	0.084763	4.27E-05	3.101	0.0015621	3.1857	0.0016048	503.7529184171454	24.601	0.16611	24.601	24.511	24.677	0					7	3	3	0	0	0	0.47038	1	8651	8651		35.618	3.6634	1	142330			28524	5457	19303	19374	28899	28899					-0.01456591113299055
NQLFSKLQL	9	Unmodified	_NQLFSKLQL_					0	0	0			REV__ENST00000450536.6_1_6:139262591-139264710:-|nuORF	REV__ENST00000450536.6_1_6:139262591-139264710:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.21343994140625	3	364.213358	1089.61824	0.097747	3.5601E-05	-0.27685	-0.00010083	-0.1791	-6.5232E-05	364.2132712064831	25.937	0.2453	25.937	25.734	25.979	0					7	4	2	0	0	0	0.54267	1	7819	7819		27.882	0	1	76826	+		28525	19307	19304	19375	28900	28900					0.07702004885709357
NQLLIHAALN	10	Unmodified	_NQLLIHAALN_					0	0	0		ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.8202514648438	2	553.819473	1105.62439	0.61307	0.00033953	0.30929	0.00017129	0.92236	0.00051082	553.8195712840845	26.704	0.32339	26.704	26.523	26.847	0					22	7	4	0	0	0	0.54861	1	9217	9217		27.882	9.5578	1	712610			28526	1535	19305	19376	28901	28901					0.07580523117235316
NQLSKRKR	8	Unmodified	_NQLSKRKR_					0	0	0			REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.88153076171875	3	343.880713	1028.62031	0.50584	0.00017395	1.4859	0.00051098	1.9918	0.00068493	343.88121132115606	16.399	0.39502	16.399	16.225	16.62	0					14	9	4	0	0	0	0.7976	1	4448	4448		20.947	6.2533	1	750930	+		28527	15500	19306	19377	28902	28902					0.10714478414161022
NQPDNLFAGGE	11	Unmodified	_NQPDNLFAGGE_					0	0	0		NCAN|p.F1177L|1|0.13|ENSG00000130287|chr19:19245351-19245351|C/A|missense_variant	NCAN|p.F1177L|1|0.13|ENSG00000130287|chr19:19245351-19245351|C/A|missense_variant	NCAN|p.F1177L|1|0.13|ENSG00000130287|chr19:19245351-19245351|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.2637329101562	2	581.262185	1160.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.634	1	20.634	20.134	21.134	0								0	0	0	0.45614	1	5558	5558		24.519	1.4767	1				28528	11842	19307	19378	28903	28903					-0.0640183115540367
NQPDNLFAGGE	11	Unmodified	_NQPDNLFAGGE_					0	0	0		NCAN|p.F1177L|1|0.13|ENSG00000130287|chr19:19245351-19245351|C/A|missense_variant	NCAN|p.F1177L|1|0.13|ENSG00000130287|chr19:19245351-19245351|C/A|missense_variant	NCAN|p.F1177L|1|0.13|ENSG00000130287|chr19:19245351-19245351|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.2628784179688	2	581.262185	1160.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.89	1	20.89	20.39	21.39	0								0	0	0	0.39048	1	6555	6555		39.253	7.298	1				28529	11842	19307	19378	28904	28904					-0.0640183115540367
NQPNGGKLF	9	Unmodified	_NQPNGGKLF_					0	0	0		ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7566223144531	2	487.756341	973.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.851	1	33.851	33.351	34.351	0								0	0	0	0.23459	1	11039	11039		45.952	7.1458	1				28530	1702	19308	19379	28905	28905					0.010320166119640817
NQPVEPYPGA	10	Unmodified	_NQPVEPYPGA_					0	0	0			REV__ENST00000269228.9_1_18:21166731-21166848:-|nuORF	REV__ENST00000269228.9_1_18:21166731-21166848:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2565307617188	2	536.258914	1070.50327	0.29228	0.00015674	-3.0989	-0.0016618	-2.8066	-0.0015051	536.2564572088919	18.938	0.53658	18.938	18.677	19.214	0					27	11	3	0	0	0	0.2978	1	5971	5971		67.494	14.557	1	684300	+		28531	18093	19309	19380	28906	28906					-0.029157243160852886
NQQARKHL	8	Unmodified	_NQQARKHL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1;nc|ENSG00000127526|Q96K37-2|SLC35E1;ENST00000409035.1_1_19:16630087-16677465:-|nuORF	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.19036865234375	3	332.189547	993.546811	3.0079	0.00099919	-0.77421	-0.00025718	2.2337	0.00074201	332.18931848170195	23.209	0.36782	23.209	23.15	23.518	0					12	7	3	0	0	0	0.72381	1	7852	7852		30.504	1.3541	1	1057400			28532	3508	19310	19381	28907	28907					0.049779299716988135
NQQGVVAI	8	Unmodified	_NQQGVVAI_					0	0	0			REV__nc|ENSG00000181222|P24928|POLR2A	REV__nc|ENSG00000181222|P24928|POLR2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.73193359375	2	414.732335	827.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.683	1	38.683	38.183	39.183	0								0	0	0	1.7419	1	14704	14704		52.299	4.3836	1		+		28533	16841	19311	19382	28908	28908					0.029489426918871686
NQQQFIKAV	9	Unmodified	_NQQQFIKAV_					0	0	0		tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.2012939453125	3	359.201341	1074.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.393	1	19.393	18.893	19.893	0								0	0	0	0.3119	1	6122	6122		32.812	1.2826	1				28534	22737	19312	19383	28909	28909					0.04788547708835722
NQRGSGLAGP	10	Unmodified	_NQRGSGLAGP_					0	0	0		ENSG00000158195|ENST00000618852|WASF2	ENSG00000158195|ENST00000618852|WASF2	ENSG00000158195|ENST00000618852|WASF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7471618652344	2	478.749047	955.483542	-0.65975	-0.00031585	-2.9616	-0.0014179	-3.6214	-0.0017337	478.74742433474	42.189	0.17906	42.189	42.106	42.285	0					7	4	2	0	0	0	0.24256	1	16834	16834		74.255	13.283	1	87078			28535	5249	19313	19384	28910	28910					0.004019444638174718
NQSLGIYSF	9	Unmodified	_NQSLGIYSF_					0	0	0			REV__ENSG00000010017|ENST00000011619|RANBP9	REV__ENSG00000010017|ENST00000011619|RANBP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7562255859375	2	514.756007	1027.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.62	1	39.62	39.12	40.12	0								0	0	0	0.27939	1	14117	14117		39.253	5.0803	1		+		28536	12888	19314	19385	28911	28911					-0.01518822827756594
NQSREVEM	8	Unmodified	_NQSREVEM_					0	0	0		SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant;ENSG00000161640|ENST00000447370|SIGLEC11;nc|ENSG00000161640|Q96RL6-2|SIGLEC11	SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant	SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.72869873046875	2	496.726923	991.439294	0.71908	0.00035719	3.232	0.0016054	3.9511	0.0019626	496.7285820806048	33.5	0.29291	33.5	33.339	33.632	0					11	7	2	0	0	0	0.58597	1	12407	12407		51.335	3.4199	1	153570			28537	5417	19315	19386	28912	28912					-0.056768277446849424
NQSREVEM	8	Unmodified	_NQSREVEM_					0	0	0		SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant;ENSG00000161640|ENST00000447370|SIGLEC11;nc|ENSG00000161640|Q96RL6-2|SIGLEC11	SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant	SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7284851074219	2	496.726923	991.439294	-0.032266	-1.6028E-05	3.7241	0.0018499	3.6919	0.0018339	496.7287035139063	33.537	0.18896	33.537	33.402	33.591	0					6	4	2	0	0	0	0.59773	1	12838	12838		49.442	8.6634	1	91235			28538	5417	19315	19386	28913	28913					-0.056768277446849424
NQTHRHTH	8	Unmodified	_NQTHRHTH_					0	0	0			REV__ENST00000498731.5_1_3:181458059-181458215:+|nuORF	REV__ENST00000498731.5_1_3:181458059-181458215:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7490844726562	2	515.749913	1029.48527	0.21559	0.00011119	-1.1632	-0.00059991	-0.94759	-0.00048872	515.7488190630872	33.56	0.11575	33.56	33.521	33.636	0					6	4	2	0	0	0	0.68432	1	10945	10945		35.618	0	1	62533	+		28539	19800	19316	19387	28914	28914					-0.02829001727582181
NQTNLFPK	8	Unmodified	_NQTNLFPK_					0	0	0			REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2597351074219	2	481.258717	960.50288	0.52803	0.00025412	1.4928	0.00071841	2.0208	0.00097253	481.25948716331624	34.655	0.21075	34.655	34.573	34.783	0					6	5	2	0	0	0	0.37144	1	12940	12940		74.255	2.3776	1	100390	+		28540	15408	19317	19388	28915	28915					0.02104900754704886
NQVGFIRGVQ	10	Unmodified	_NQVGFIRGVQ_					0	0	0		L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|156|3|sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|156|3|sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|156|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3090209960938	2	559.309272	1116.60399	1.7982	0.0010057	-1.5786	-0.00088294	0.21954	0.00012279	559.3080069119784	30.769	0.1448	30.769	30.703	30.848	0					8	3	3	0	0	0	0.60076	1	11156	11156		34.173	5.023	1	87002			28541	11298	19318	19389	28916	28916					0.050353524574120456
NQVPVANVLPQ	11	Unmodified	_NQVPVANVLPQ_					0	0	0			REV__ENSG00000103479|ENST00000262133|RBL2	REV__ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.8306274414062	2	589.830037	1177.64552	-0.13032	-7.6866E-05	0.48236	0.00028451	0.35204	0.00020764	589.8304511517734	23.328	0.26673	23.328	23.128	23.395	0					14	5	3	0	0	0	0.56817	1	8013	8013		39.253	0.49923	1	220120	+		28542	13681	19319	19390	28917	28917					0.0638048842608896
NQWFLPAV	8	Unmodified	_NQWFLPAV_					0	0	0		HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant;HCFC2|p.A339Hfs*2|1|0.43|ENSG00000111727|chr12:104082847-104082847|A/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.T56M|1|0.16|ENSG00000111727|chr12:104066170-104066170|C/T|missense_variant	HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7551574707031	2	487.758352	973.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.96	1	34.96	34.46	35.46	0								0	0	0	1.7419	1	12415	12415		28.254	0	1				28543	2693	19320	19391	28918	28918					0.01434106105648425
NQYYTNCSAG	10	Unmodified	_NQYYTNCSAG_					0	0	0		CACNA1G|p.R516Gfs*48|1|0.26|ENSG00000006283|chr17:50575943-50575943|C/-|frameshift_variant;CACNA1G|p.G548Wfs*31|1|0.08|ENSG00000006283|chr17:50576035-50576036|-/C|frameshift_variant;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;CACNA1G|p.P2298Afs*13|1|0.4|ENSG00000006283|chr17:50626502-50626503|-/G|frameshift_variant;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;CACNA1G|p.E2317Rfs*47|1|0.22|ENSG00000006283|chr17:50626559-50626559|C/-|frameshift_variant;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;CACNA1G|p.E1556Rfs*15|1|0.23|ENSG00000006283|chr17:50607978-50607978|G/-|frameshift_variant;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	CACNA1G|p.R516Gfs*48|1|0.26|ENSG00000006283|chr17:50575943-50575943|C/-|frameshift_variant	CACNA1G|p.R516Gfs*48|1|0.26|ENSG00000006283|chr17:50575943-50575943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.7217407226562	2	560.721838	1119.42912	0.49112	0.00027538	-0.013927	-7.8091E-06	0.47719	0.00026757	560.7210307217288	13.702	0.090995	13.702	13.653	13.744	0					4	2	2	0	0	0	0.58189	1	3187	3187		36.447	1.246	1	443260			28544	350	19321	19392	28919	28919					-0.12581435469928692
NRAEKIRW	8	Unmodified	_NRAEKIRW_					0	0	0			REV__ENSG00000114767|ENST00000232888|RRP9	REV__ENSG00000114767|ENST00000232888|RRP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8038940429688	2	536.804157	1071.59376	-0.42255	-0.00022683	1.1345	0.00060898	0.71191	0.00038215	536.804801344661	38.76	0.23702	38.76	38.674	38.911	0					25	13	3	0	0	0	0.30437	1	13048	13048		82.305	11.009	1	245330	+		28545	14079	19322	19393	28920	28920					0.06082789522838539
NRASPPSRR	9	Unmodified	_NRASPPSRR_					0	0	0			REV__ENSG00000135093|ENST00000257548|USP30	REV__ENSG00000135093|ENST00000257548|USP30	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.5289001464844	3	347.528451	1039.56352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.414	1	26.414	25.914	26.914	0								0	0	0	0.38404	1	9451	9451		11.636	0	1		+		28546	14782	19323	19394	28921	28921					0.04532430857648251
NRCDARTYC	9	Unmodified	_NRCDARTYC_					0	0	0		ENST00000543754.1_1_12:132425763-132428128:+|nuORF;PUS1|p.T320Qfs*72|1|0.08|ENSG00000177192|chr12:131941704-131941704|C/-|frameshift_variant;nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2323608398438	2	551.23185	1100.44915	0.14559	8.0253E-05	0.69853	0.00038505	0.84412	0.00046531	551.2327024641095	11.944	0.24375	11.944	11.813	12.057	0					13	7	2	0	0	0	0.59802	1	2568	2568		21.96	3.6355	1	783090			28547	6653	19324	19395	28922	28922					-0.09705963010969754
NRDLEVKIR	9	Unmodified	_NRDLEVKIR_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.836181640625	2	571.835654	1141.65676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.282	1	20.282	19.782	20.782	0								0	0	0	0.31785	1	6549	6549		31.53	2.3803	1			+	28548	659	19325	19396	28923	28923					0.0915931052020369
NRGKPALN	8	Unmodified	_NRGKPALN_					0	0	0			REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF	REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.250244140625	2	435.251226	868.487899	-0.48286	-0.00021017	-0.28121	-0.0001224	-0.76407	-0.00033256	435.2510339998303	53.776	0.22901	53.776	53.649	53.878	0					19	14	2	0	0	0	0.75243	1	18875	18875		26.796	6.3143	1	78383	+		28549	17759	19326	19397	28924	28924					0.04839453677357142
NRGPVSVC	8	Unmodified	_NRGPVSVC_					0	0	0		ENST00000563332.6_1_16:4561236-4561575:-|nuORF	ENST00000563332.6_1_16:4561236-4561575:-|nuORF	ENST00000563332.6_1_16:4561236-4561575:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.21197509765625	2	416.210712	830.406871	2.774	0.0011546	0.8069	0.00033584	3.5809	0.0014904	416.2111501840799	49.463	0.39405	49.463	49.342	49.736	0					25	18	2	0	0	0	0.72381	1	19541	19541		30.504	11.144	1	136270			28550	10733	19327	19398	28925	28925					-0.015115703570359074
NRGSGPYGRY	10	Unmodified	_NRGSGPYGRY_					0	0	0			REV__ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant	REV__ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.77490234375	2	563.773054	1125.53155	1.2481	0.00070362	1.5612	0.00088018	2.8093	0.0015838	563.7738894891746	33.137	0.1884	33.137	33.064	33.252	0					14	8	2	0	0	0	0.52707	1	10745	10745		42.396	3.1433	1	47008	+		28551	12072	19328	19399	28926	28926					-0.02618981616160454
NRGVRLKA	8	Unmodified	_NRGVRLKA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.28948974609375	2	457.288143	912.561733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.525	1	36.525	36.025	37.025	0								0	0	0	1.7419	1	11981	11981		18.324	0.95945	1				28552	1802	19329	19400	28927	28927					0.10195421839682695
NRHGPPGVL	9	Unmodified	_NRHGPPGVL_					0	0	0			REV__ENST00000254868.8_2_17:6978245-6978371:-|nuORF	REV__ENST00000254868.8_2_17:6978245-6978371:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7632751464844	2	473.764501	945.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.507	1	29.507	29.007	30.007	0								0	0	0	0.32356	1	9320	9320		30.504	2.6214	1		+		28553	17979	19330	19401	28928	28928					0.039511425687237534
NRILHNDP	8	Unmodified	_NRILHNDP_					0	0	0		TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant;TNIK|p.E1253Kfs*13|1|0.04|ENSG00000154310|chr3:171066678-171066678|C/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.759521484375	2	489.759415	977.504277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.773	1	33.773	33.273	34.273	0								0	0	0	1.7419	1	12522	12522		27.882	1.0861	1				28554	5084	19331	19402	28929	28929					0.014625348434606167
NRKERSSY	8	Unmodified	_NRKERSSY_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2696533203125	2	520.267604	1038.52066	0.64736	0.0003368	2.8593	0.0014876	3.5067	0.0018244	520.2690332107675	33.529	0.1389	33.529	33.454	33.593	0					6	4	2	0	0	0	0.49216	1	10922	10922		60.972	5.4677	1	58167			28555	5002	19332	19403	28930	28930					0.002936160095714513
NRKKVKKASPK	11	Unmodified	_NRKKVKKASPK_					0	0	0			REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant	REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.27862548828125	3	428.613856	1282.81974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.643	1	12.643	12.143	13.143	0								0	0	0	0.45674	1	2740	2740		21.032	1.0018	1		+		28556	13254	19333	19404	28931	28931					0.18964113642050506
NRKLISIDS	9	Unmodified	_NRKLISIDS_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3045043945312	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.943	1	56.943	56.443	57.443	0								0	0	0	0.3304	1	16435	16435		29.15	4.6304	1		+		28557	21809	19334	19405	28932	28932					0.07224530363305348
NRKRVLNV	8	Unmodified	_NRKRVLNV_					0	0	0		PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant;ENSG00000197724|ENST00000359246|PHF2;PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant;PHF2|p.K492Dfs*21|1|0.2|ENSG00000197724|chr9:93660330-93660331|AA/-|frameshift_variant;PHF2|p.S183N|1|0.39|ENSG00000197724|chr9:93649158-93649158|G/A|missense_variant	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.81585693359375	2	499.814525	997.614496	2.9192	0.0014591	-0.30661	-0.00015325	2.6126	0.0013058	499.81444276306735	43.409	0.22803	43.409	43.323	43.551	0					18	8	3	0	0	0	0.70055	1	17351	17351		33.516	33.516	1	181400			28558	7491	19335	19406	28933	28933					0.1155937990251914
NRLCKYCF	8	Unmodified	_NRLCKYCF_					0	0	0			REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant	REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7473754882812	2	523.749147	1045.48374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.931	1	36.931	36.431	37.431	0								0	0	0	1.7419	1	14416	14416		40.573	11.423	1		+		28559	15031	19336	19407	28934	28934					-0.037180951322170586
NRLNHLGK	8	Unmodified	_NRLNHLGK_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2757568359375	2	476.277775	950.540997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.131	1	22.131	21.631	22.631	0								0	0	0	1.7419	1	6467	6467		31.955	1.4512	1		+		28560	13971	19337	19408	28935	28935					0.06374831460050245
NRLYDFEKD	9	Unmodified	_NRLYDFEKD_					0	0	0			REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1;REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2906494140625	2	600.288202	1198.56185	3.1223	0.0018743	1.2326	0.0007399	4.3549	0.0026142	600.2890051003562	43.563	0.88627	43.563	43.257	44.143	0					50	31	2	0	0	0	0.44593	1	17583	17583		37.812	4.2959	1	125970	+		28561	21711;21863	19338	19409	28936	28936					-0.02948667741634381
NRNSSPVHFAF	11	Unmodified	_NRNSSPVHFAF_					0	0	0		ENST00000444100.2_1_2:61245417-61245543:+|nuORF	ENST00000444100.2_1_2:61245417-61245543:+|nuORF	ENST00000444100.2_1_2:61245417-61245543:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	638.314697265625	2	638.315086	1274.61562	0.99713	0.00063649	-1.796	-0.0011464	-0.79884	-0.00050991	638.3140465377488	23.608	0.54981	23.608	23.504	24.053	0					36	19	2	0	0	0	0.69733	1	7102	7102		27.882	27.882	1	225970			28562	9603	19339	19410	28937	28937					-0.010704505192506986
NRNVLKRELG	10	Unmodified	_NRNVLKRELG_					0	0	0		ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.856201171875	2	599.854378	1197.6942	0.22288	0.0001337	3.1837	0.0019097	3.4066	0.0020434	599.8559479948125	34.036	0.35566	34.036	33.817	34.173	0					11	8	2	0	0	0	0.58308	1	13119	13119		39.253	25.799	1	70607			28563	4504	19340	19411	28938	28938					0.10326401785846429
NRPSLEPSF	9	Unmodified	_NRPSLEPSF_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7670288085938	2	523.766906	1045.51926	1.7484	0.00091575	-0.62226	-0.00032592	1.1261	0.00058983	523.7665559142761	17.675	0.51051	17.675	17.539	18.05	0					22	12	2	0	0	0	0.47038	1	5071	5071		35.618	5.3006	1	292580	+		28564	15179	19341	19412	28939	28939					-0.0016801807919364364
NRPTDPASL	9	Unmodified	_NRPTDPASL_					0	0	0		ENST00000496962.1_1_2:85786016-85788551:-|nuORF;GGCX|p.P636Qfs*11|1|0.07|ENSG00000115486|chr2:85550732-85550732|G/-|frameshift_variant;ENSG00000115486|ENST00000233838|GGCX	ENST00000496962.1_1_2:85786016-85788551:-|nuORF	ENST00000496962.1_1_2:85786016-85788551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7526550292969	2	485.751256	969.487959	2.5013	0.001215	1.3597	0.00066046	3.8609	0.0018754	485.7516717166699	42.402	0.33449	42.402	42.246	42.581	0					20	9	3	0	0	0	0.087582	1	16892	16892		82.305	0.064519	1	339470			28565	2914	19342	19413	28940	28940					0.0019940888670362256
NRQVESLIV	9	Unmodified	_NRQVESLIV_					0	0	0			REV__ENSG00000160703|ENST00000409109|NLRX1	REV__ENSG00000160703|ENST00000409109|NLRX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.3040161132812	2	529.303655	1056.59276	-1.1724	-0.00062058	1.8554	0.00098207	0.68294	0.00036148	529.3044992474274	30.378	0.18989	30.378	30.278	30.468	0					6	4	2	0	0	0	0.33044	1	10351	10351		47.657	4.7931	1	123430	+		28566	15759	19343	19414	28941	28941					0.0667253036326656
NRRRASKAS	9	Unmodified	_NRRRASKAS_					0	0	0		nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENSG00000134686|ENST00000683057|PHC2;ENST00000467894.5_1_1:33790468-33797238:-|nuORF;nc|ENSG00000134686|Q8IXK0-3|PHC2;ENST00000485928.5_1_1:33791428-33799821:-|nuORF;nc|ENSG00000134686|Q8IXK0-2|PHC2	nc|ENSG00000134686|Q8IXK0-4|PHC2	nc|ENSG00000134686|Q8IXK0-4|PHC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3037719726562	2	523.302313	1044.59007	3.4155	0.0017873	-0.21975	-0.000115	3.1957	0.0016723	523.3020642324253	49.131	1.128	49.131	48.861	49.989	0					112	56	3	0	0	0	0.53083	1	19501	19501		29.15	0	1	276720			28567	3936	19344	19415	28942	28942					0.0695611974899748
NRRRFLLD	8	Unmodified	_NRRRFLLD_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant;MCM6|p.A186V|1|0.23|ENSG00000076003|chr2:135868669-135868669|G/A|missense_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.3169555664062	2	545.317432	1088.62031	0.62423	0.0003404	-1.1383	-0.00062073	-0.51407	-0.00028033	545.3167852008713	51.186	0.50933	51.186	50.836	51.346	0					44	31	2	0	0	0	0.77246	1	15327	15327		24.203	5.8783	1	135570			28568	1553	19345	19416	28943	28943					0.07954478414194455
NRSALGSHR	9	Unmodified	_NRSALGSHR_					0	0	0			REV__FLG|p.S316L|1|0.17|ENSG00000143631|chr1:152313939-152313939|G/A|missense_variant	REV__FLG|p.S316L|1|0.17|ENSG00000143631|chr1:152313939-152313939|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.26922607421875	2	499.267939	996.521324	-0.33851	-0.00016901	3.1331	0.0015643	2.7946	0.0013953	499.2696339213639	16.474	0.091965	16.474	16.415	16.506	0					4	2	2	0	0	0	0.47038	1	3917	3917		35.618	0.41757	1	33713	+		28569	20677	19346	19417	28944	28944					0.02292455449287445
NRVFGFIH	8	Unmodified	_NRVFGFIH_					0	0	0			REV__ENST00000555137.5_1_14:21702260-21704601:-|nuORF	REV__ENST00000555137.5_1_14:21702260-21704601:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2672424316406	2	495.269419	988.524284	-0.65684	-0.00032531	-3.4348	-0.0017011	-4.0916	-0.0020265	495.2677098156247	15.656	0.16715	15.656	15.596	15.763	0					6	3	2	0	0	0	0.66238	1	4186	4186		39.021	0.21535	1	346920	+		28570	20240	19347	19418	28945	28945					0.029563305740907708
NRVLATSKE	9	Unmodified	_NRVLATSKE_					0	0	0			REV__ENST00000490356.2_1_11:132177611-132182375:+|nuORF	REV__ENST00000490356.2_1_11:132177611-132182375:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.28729248046875	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.75	1	18.75	18.25	19.25	0								0	0	0	0.37786	1	5809	5809		6.3127	1.9964	1		+		28571	19709	19348	19419	28946	28946					0.05383957329195255
NRVLVVDLG	9	Unmodified	_NRVLVVDLG_					0	0	0		RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant;nc|ENSG00000159788|O14924-5|RGS12;RGS12|p.K1178Nfs*32|1|0.71|ENSG00000159788|chr4:3428672-3428672|A/-|frameshift_variant;RGS12|p.Q1292Rfs*49|1|0.23|ENSG00000159788|chr4:3430704-3430704|C/-|frameshift_variant;nc|ENSG00000159788|O14924-4|RGS12;RGS12|p.Q1363Rfs*30|1|0.3|ENSG00000159788|chr4:3430923-3430923|C/-|frameshift_variant;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF;RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant;RGS12|p.S435G|1|0.09|ENSG00000159788|chr4:3317473-3317473|A/G|missense_variant	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7950134277344	2	492.795466	983.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.203	1	39.203	38.703	39.703	0								0	0	0	0.30504	1	14915	14915		34.173	5.023	1				28572	5331	19349	19420	28947	28947					0.08393449197171776
NRYISDTF	8	Unmodified	_NRYISDTF_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2458190917969	2	508.245806	1014.47706	1.312	0.00066683	-1.0756	-0.00054666	0.23645	0.00012017	508.2450491848772	28.332	0.31653	28.332	28.194	28.511	0					12	6	2	0	0	0	0.60719	1	10252	10252		47.916	3.5384	1	784350			28573	5471	19350	19421	28948	28948					-0.029599934875705003
NSALGLEGSP	10	Unmodified	_NSALGLEGSP_					0	0	0		ENST00000370626.3_1_10:99446961-99447051:-|nuORF	ENST00000370626.3_1_10:99446961-99447051:-|nuORF	ENST00000370626.3_1_10:99446961-99447051:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.738037109375	2	472.737814	943.461075	-0.12265	-5.798E-05	1.2191	0.00057634	1.0965	0.00051836	472.7381657103665	14.385	0.15906	14.385	14.234	14.393	0					6	3	2	0	0	0	0.63224	1	3689	3689		30.318	2.4355	1	48324			28574	8956	19351	19422	28949	28949					-0.012916997244701633
NSAMIRTAIVK	11	Unmodified	_NSAMIRTAIVK_					0	0	0			REV__ENST00000443426.2_1_6:43395621-43402667:+|nuORF	REV__ENST00000443426.2_1_6:43395621-43402667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.8994445800781	3	401.900786	1202.68053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.752	1	21.752	21.252	22.252	0								0	0	0	0.41351	1	7129	7129		34.087	4.9164	1		+		28575	12038	19352	19423	28950	28950					0.08729407962368896
NSCWRVPAL	9	Unmodified	_NSCWRVPAL_					0	0	0			REV__ENST00000528878.1_1_7:64465174-64465315:-|nuORF	REV__ENST00000528878.1_1_7:64465174-64465315:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.26513671875	2	523.266019	1044.51748	1.0381	0.00054319	-1.349	-0.00070589	-0.31095	-0.00016271	523.2647017368805	27.674	0.21242	27.674	27.569	27.781	0					6	4	2	0	0	0	0.5741	1	10066	10066		11.511	0	1	37037	+		28576	20022	19353	19424	28951	28951					-0.0029935036880033294
NSDLHSQGVVI	11	Unmodified	_NSDLHSQGVVI_					0	0	0			REV__ENSG00000168310|ENST00000393593|IRF2	REV__ENSG00000168310|ENST00000393593|IRF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	584.8040161132812	2	584.801477	1167.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.104	1	36.104	35.604	36.604	0								0	0	0	0.40864	1	11843	11843		35.178	6.0082	1		+		28577	16251	19354	19425	28952	28952					0.01131021149717526
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.76885986328125	2	511.766906	1021.51926	1.1528	0.00058999	0.74551	0.00038153	1.8984	0.00097151	511.76721844934826	38.687	0.35742	38.687	38.44	38.798	0					36	20	2	0	0	0	0.41113	1	12556	12556		40.778	7.9657	1	134820			28578	4115	19355	19426	28953	28953					0.009359819208270892
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.76812744140625	2	511.766906	1021.51926	-0.13669	-6.9952E-05	1.1563	0.00059176	1.0196	0.00052181	511.7677646855044	38.648	0.28721	38.648	38.489	38.776	0					24	16	2	0	0	0	0.28897	1	12575	12575		51.193	14.746	1	100290			28579	4115	19355	19426	28954	28954					0.009359819208270892
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7676086425781	2	511.766906	1021.51926	0.0018137	9.2822E-07	0.60966	0.000312	0.61147	0.00031293	511.7676318891403	39.007	0.73243	39.007	38.702	39.434	0					54	26	3	0	0	0	0.33044	2	14888	14752;14888		47.657	7.3079	1	422240			28580	4115	19355	19426	28955;28956	28956					0.009359819208270892
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7671813964844	2	511.766906	1021.51926	0.40484	0.00020718	0.78898	0.00040377	1.1938	0.00061096	511.76734267076546	38.781	0.6214	38.781	38.44	39.062	0					68	32	3	0	0	0	0.27249	1	13787	13787		52.937	5.2794	1	337360			28581	4115	19355	19426	28957	28957					0.009359819208270892
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7672424316406	2	511.766906	1021.51926	1.4062	0.00071966	-0.90685	-0.0004641	0.49938	0.00025557	511.7665515269727	38.845	1.0373	38.845	38.35	39.387	0					37	22	2	0	0	0	0.035062	2	15242	15242;15421		104.06	54.615	1	2546000			28582	4115	19355	19426	28958;28959	28958					0.009359819208270892
NSEILDVLDN	10	Unmodified	_NSEILDVLDN_					0	0	0		tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.27978515625	2	566.280043	1130.54553	1.2011	0.00068017	-3.5493	-0.0020099	-2.3482	-0.0013298	566.2778280149954	26.847	0.21249	26.847	26.767	26.979	0					13	7	2	0	0	0	0.66839	1	8198	8198		27.047	1.4733	1	113810			28583	22563	19356	19427	28960	28960					-0.014517936983793334
NSEKIITFQ	9	Unmodified	_NSEKIITFQ_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2903442382812	2	540.290214	1078.56587	0.27176	0.00014683	-2.9898	-0.0016154	-2.7181	-0.0014686	540.2886006352586	39.618	0.38158	39.618	39.499	39.88	0					31	15	3	0	0	0	0.18505	1	15077	15077		63.426	10.338	1	341360			28584	6380	19357	19428	28961	28961					0.029734217520854145
NSESLLGVF	9	Unmodified	_NSESLLGVF_					0	0	0			REV__nc|ENSG00000148690|Q70Z53-4|FRA10AC1	REV__nc|ENSG00000148690|Q70Z53-4|FRA10AC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2505187988281	2	483.250557	964.486562	0.21461	0.00010371	0.21942	0.00010604	0.43403	0.00020974	483.2506607826919	41.543	0.28139	41.543	41.413	41.694	0					23	16	2	0	0	0	0.37197	1	14621	14621		44.117	0	1	89280	+		28585	21060	19358	19429	28962	28962					0.0028977479796594707
NSFAAKVY	8	Unmodified	_NSFAAKVY_					0	0	0			REV__tr|U7SYT2|U7SYT2_FUSNURibosomalRNAsmallsubunitmethyltransferaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmAPE=3SV=1	REV__tr|U7SYT2|U7SYT2_FUSNURibosomalRNAsmallsubunitmethyltransferaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2347412109375	2	450.23471	898.454868	-0.19826	-8.9263E-05	0.58323	0.00026259	0.38497	0.00017332	450.2348025224675	33.318	0.24498	33.318	33.147	33.392	0					11	7	2	0	0	0	0.74405	1	11664	11664		27.882	5.9224	1	60204	+		28586	22031	19359	19430	28963	28963					0.001578268346634104
NSFLKKEGL	9	Unmodified	_NSFLKKEGL_					0	0	0		nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10;nc|ENSG00000172728|Q6P4F1-7|FUT10;ENST00000518076.1_1_8:33247301-33311025:-|nuORF;ENST00000416169.5_1_8:33310680-33318970:-|nuORF	nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2952270507812	2	518.295299	1034.57605	1.5798	0.00081879	-0.28012	-0.00014519	1.2996	0.0006736	518.2952318238407	33.099	0.74312	33.099	32.956	33.7	0					58	15	6	0	0	0	0.44593	1	12702	12702		37.812	0	1	107090000			28587	6377	19360	19431	28964	28964					0.060140294773418645
NSFRCLKQI	9	Unmodified	_NSFRCLKQI_					0	0	0			REV__ADGRF5|p.Q821Afs*22|1|0.06|ENSG00000069122|chr6:46859442-46859443|-/GGGC|frameshift_variant	REV__ADGRF5|p.Q821Afs*22|1|0.06|ENSG00000069122|chr6:46859442-46859443|-/GGGC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.797607421875	2	554.800226	1107.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.066	1	43.066	42.566	43.566	0								0	0	0	0.04624	1	16873	16873		87.696	18.91	1		+		28588	12088	19361	19432	28965	28965					0.03640894211048362
NSGARIGLAE	10	Unmodified	_NSGARIGLAE_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.26446533203125	2	494.26453	986.514508	-0.45689	-0.00022583	0.15884	7.8507E-05	-0.29806	-0.00014732	494.2646008786852	23.957	0.2269	23.957	23.863	24.09	0					10	5	2	0	0	0	0.46128	1	8013	8013		49.536	3.5638	1	784160			28589	29	19362	19433	28966	28966					0.020710977780368012
NSGARIGLAE	10	Unmodified	_NSGARIGLAE_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2635498046875	2	494.26453	986.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.916	1	23.916	23.416	24.416	0								0	0	0	0.37293	1	8303	8303		38.754	2.3069	1				28590	29	19362	19433	28967	28967					0.020710977780368012
NSGEETDSQQ	10	Unmodified	_NSGEETDSQQ_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7139892578125	2	547.715264	1093.41598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.516	1	13.516	13.016	14.016	0								0	0	0	0.4162	1	3307	3307		25.574	1.0549	1		+		28591	13070	19363	19434	28968	28968					-0.12699595048297851
NSGGIVYLKN	10	Unmodified	_NSGGIVYLKN_					0	0	0			REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7905883789062	2	532.790381	1063.56621	1.7229	0.00091795	-1.0675	-0.00056877	0.65537	0.00034918	532.7898903976533	24.839	0.76199	24.839	24.545	25.307	0					45	15	5	0	0	0	0.065649	1	8756	8756		104.06	13.687	1	5698100	+		28592	13502	19364	19435	28969	28969					0.036968414719467546
NSGGIVYLKN	10	Unmodified	_NSGGIVYLKN_					0	0	0			REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.79052734375	2	532.790381	1063.56621	1.7628	0.00093919	-1.0614	-0.00056553	0.70134	0.00037367	532.78978142692	24.808	0.75131	24.808	24.513	25.264	0					33	15	4	0	0	0	0.033694	1	8616	8616		115.49	13.893	1	8831000	+		28593	13502	19364	19435	28970	28970					0.036968414719467546
NSGGWVIGVP	10	Unmodified	_NSGGWVIGVP_					0	0	0			REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|84|3|anti-sense	REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|84|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2577819824219	2	493.258717	984.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.352	1	18.352	17.852	18.852	0								0	0	0	0.4201	1	4772	4772		24.203	0.68005	1		+		28594	21641	19365	19436	28971	28971					0.010009007547182591
NSGIGKASCHV	11	Unmodified	_NSGIGKASCHV_					0	0	0		nc|ENSG00000186153|Q9NZC7-7|WWOX	nc|ENSG00000186153|Q9NZC7-7|WWOX	nc|ENSG00000186153|Q9NZC7-7|WWOX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7607421875	2	536.76384	1071.51313	0.71596	0.0003843	-4.4808	-0.0024051	-3.7648	-0.0020208	537.2646144932614	18.57	0.11531	18.57	18.539	18.654	0					9	4	3	0	0	0	0.76233	1	4670	4670		21.686	1.689	1	342070			28595	11688	19366	19437	28972	28972					-0.01976859582373436
NSGNYLNPA	9	Unmodified	_NSGNYLNPA_					0	0	0		ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.22216796875	2	475.222331	948.430109	0.31944	0.0001518	-0.38052	-0.00018083	-0.061078	-2.9025E-05	475.2219169110026	22.257	0.19038	22.257	22.165	22.355	0					10	4	3	0	0	0	0.44593	1	7215	7215		37.812	0	1	401570			28596	2154	19367	19438	28973	28973					-0.04616853038726276
NSHCGAAL	8	Unmodified	_NSHCGAAL_					0	0	0		ENST00000371250.3_1_1:56961694-56961862:-|nuORF	ENST00000371250.3_1_1:56961694-56961862:-|nuORF	ENST00000371250.3_1_1:56961694-56961862:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.6746826171875	2	386.673963	771.333372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.74	1	26.74	26.24	27.24	0								0	0	0	1.7419	1	8444	8444		26.796	0	1				28597	8966	19368	19439	28974	28974					-0.0614411879950012
NSIEVRIT	8	Unmodified	_NSIEVRIT_					0	0	0		ENSG00000226761|ENST00000533467|TAS2R46	ENSG00000226761|ENST00000533467|TAS2R46	ENSG00000226761|ENST00000533467|TAS2R46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2635498046875	2	466.263999	930.513445	-0.43794	-0.0002042	-0.72202	-0.00033665	-1.16	-0.00054085	466.26375496646693	30.535	0.13938	30.535	30.494	30.634	0					7	5	2	0	0	0	0.59773	1	9748	9748		49.442	5.3247	1	65375			28598	7878	19369	19440	28975	28975					0.04540883409140406
NSIFYGPPG	9	Unmodified	_NSIFYGPPG_					0	0	0		tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2317810058594	2	476.232168	950.449782	-0.62559	-0.00029793	0.20707	9.8614E-05	-0.41852	-0.00019931	476.2321705336913	34.543	1.2587	34.543	34.344	35.603	0					64	25	6	0	0	0	0.53083	1	13527	13527		29.15	0.89528	1	4595900			28599	22881	19370	19441	28976	28976					-0.027424770279367294
NSIGAIVSGP	10	Unmodified	_NSIGAIVSGP_					0	0	0		CDON|p.P586Hfs*28|1|0.1|ENSG00000064309|chr11:126005853-126005853|G/-|frameshift_variant;CDON|p.S875Rfs*8|1|0.36|ENSG00000064309|chr11:125994309-125994309|A/-|frameshift_variant;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON;CDON|p.A250Hfs*35|1|0.06|ENSG00000064309|chr11:126017269-126017270|-/CTGTAACCTTGGAGTGTGT|frameshift_variant;ENST00000525625.1_1_11:125884983-125893371:-|nuORF;CDON|p.S478Wfs*25|1|0.53|ENSG00000064309|chr11:126010453-126010460|AGCTTGGG/-|frameshift_variant	CDON|p.P586Hfs*28|1|0.1|ENSG00000064309|chr11:126005853-126005853|G/-|frameshift_variant	CDON|p.P586Hfs*28|1|0.1|ENSG00000064309|chr11:126005853-126005853|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.75042724609375	2	457.750724	913.486896	-0.4365	-0.00019981	0.19297	8.8332E-05	-0.24353	-0.00011148	457.75065916667245	33.608	0.32455	33.608	33.5	33.825	0					11	7	2	0	0	0	0.47859	1	12827	12827		47.657	0	1	840270			28600	462	19371	19442	28977	28977					0.026691945178299648
NSIGPVNAI	9	Unmodified	_NSIGPVNAI_					0	0	0		GABRG2|p.A158Lfs*13|1|0.15|ENSG00000113327|chr5:162097776-162097776|A/-|frameshift_variant;nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	GABRG2|p.A158Lfs*13|1|0.15|ENSG00000113327|chr5:162097776-162097776|A/-|frameshift_variant	GABRG2|p.A158Lfs*13|1|0.15|ENSG00000113327|chr5:162097776-162097776|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.744873046875	2	442.745442	883.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.581	1	40.581	40.081	41.081	0								0	0	0	0.2591	1	15472	15472		42.396	10.441	1				28601	2794	19372	19443	28978	28978					0.029932118633610116
NSILHMWY	8	Unmodified	_NSILHMWY_					0	0	0		DMXL2|p.H911Y|1|0.24|ENSG00000104093|chr15:51507167-51507167|G/A|missense_variant	DMXL2|p.H911Y|1|0.24|ENSG00000104093|chr15:51507167-51507167|G/A|missense_variant	DMXL2|p.H911Y|1|0.24|ENSG00000104093|chr15:51507167-51507167|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2566528320312	2	532.25512	1062.49569	2.3827	0.0012682	0.37355	0.00019883	2.7562	0.001467	532.2553743389235	27.089	0.21069	27.089	26.969	27.18	0					12	5	3	0	0	0	0.61938	1	9414	9414		45.952	1.4209	1	804760			28602	808	19373	19444	28979	28979					-0.03306155117365961
NSKGPLGASSL	11	Unmodified	_NSKGPLGASSL_					0	0	0		nc|ENSG00000173320|Q9P2F5-2|STOX2;ENSG00000173320|ENST00000308497|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.77978515625	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.374	1	30.374	29.874	30.874	0								0	0	0	0.30675	1	10336	10336		51.193	3.2771	1				28603	6422	19374	19445	28980	28980					0.03188251092274186
NSKSSIALY	9	Unmodified	_NSKSSIALY_					0	0	0			REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7637939453125	2	491.763832	981.513111	0.81952	0.00040301	-0.4482	-0.00022041	0.37132	0.0001826	491.76353167350277	35.675	0.3129	35.675	35.568	35.881	0					13	6	3	0	0	0	0.3269	1	13805	13805		47.96	8.938	1	943190	+		28604	22032	19375	19446	28981	28981					0.021614636892763883
NSKVYVGDY	9	Unmodified	_NSKVYVGDY_					0	0	0		tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7537231445312	2	522.753464	1043.49238	0.4451	0.00023268	0.18785	9.8197E-05	0.63295	0.00033088	522.7536246314374	39.979	0.54479	39.979	39.701	40.245	0					19	12	2	0	0	0	0.48389	1	15789	15789		34.173	1.3601	1	180220			28605	22970	19376	19447	28982	28982					-0.027631266903881624
NSLGHGANTE	10	Unmodified	_NSLGHGANTE_					0	0	0		ENST00000479540.5_1_20:62201547-62202346:-|nuORF;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENST00000479540.5_1_20:62201547-62202346:-|nuORF	ENST00000479540.5_1_20:62201547-62202346:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2288818359375	2	500.228145	998.441737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.452	1	22.452	21.952	22.952	0								0	0	0	0.4044	1	6612	6612		29.17	0.020503	1				28606	8950	19377	19448	28983	28983					-0.05754656015369619
NSLIQTGLA	9	Unmodified	_NSLIQTGLA_					0	0	0		OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant;ENSG00000174339|ENST00000307832|OR2Y1	OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant	OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7583312988281	2	458.758549	915.502546	0.065939	3.025E-05	-0.4868	-0.00022332	-0.42086	-0.00019307	458.7583661514624	27.849	0.43388	27.849	27.565	27.998	0					24	14	3	0	0	0	0.47038	1	8602	8602		35.618	2.8059	1	193100			28607	6484	19378	19449	28984	28984					0.041414810348555875
NSLIRLATGT	10	Unmodified	_NSLIRLATGT_					0	0	0			REV__SIGLEC14|p.L365Sfs*29|1|0.68|ENSG00000254415|chr19:51643592-51643593|-/A|frameshift_variant	REV__SIGLEC14|p.L365Sfs*29|1|0.68|ENSG00000254415|chr19:51643592-51643593|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3040771484375	2	523.303655	1044.59276	3.4131	0.0017861	-2.068	-0.0010822	1.3451	0.00070387	523.3025263489895	48.665	0.33453	48.665	48.514	48.848	0					28	17	2	0	0	0	0.65051	1	19300	19300		28.081	2.5074	1	79734	+		28608	17744	19379	19450	28985	28985					0.07224530363305348
NSLKNYGLQ	9	Unmodified	_NSLKNYGLQ_					0	0	0			REV__ENSG00000166897|ENST00000402918|ELFN2	REV__ENSG00000166897|ENST00000402918|ELFN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.775146484375	2	518.774731	1035.53491	0.51215	0.00026569	-0.013456	-6.9804E-06	0.49869	0.00025871	518.7747891464702	27.844	0.19221	27.844	27.742	27.934	0					15	6	3	0	0	0	0.41113	1	8623	8623		40.778	4.3314	1	462600	+		28609	16150	19380	19451	28986	28986					0.018562684378593985
NSLKPKLDAL	10	Unmodified	_NSLKPKLDAL_					0	0	0			REV__ENSG00000178235|ENST00000674365|SLITRK1	REV__ENSG00000178235|ENST00000674365|SLITRK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.8292236328125	2	549.829506	1097.64446	1.2707	0.00069864	-1.194	-0.00065648	0.076682	4.2162E-05	549.8287870225425	21.039	0.26656	21.039	20.868	21.135	0					13	7	2	0	0	0	0.2978	1	5730	5730		67.494	11.06	1	118710	+		28610	16729	19381	19452	28987	28987					0.0995427405719056
NSLPAEWCE	9	Unmodified	_NSLPAEWCE_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;LRBA-SH3D19|2|fusion;LRBA-SH3D19|3|fusion;LRBA-SH3D19|1|fusion;LRBA-SH3D19|4|fusion	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.72412109375	2	524.723849	1047.43315	1.0039	0.00052675	-0.21869	-0.00011475	0.78516	0.00041199	524.7236932849863	32.514	1.7522	32.514	30.949	32.701	0					63	39	2	0	0	0	0.59802	1	12096	12096		21.96	0	1	289670			28611	2585	19382	19453	28988	28988					-0.08867345976227625
NSLVNLYLQ	9	Unmodified	_NSLVNLYLQ_					0	0	0		FTL|p.K143Ifs*9|1|0.37|ENSG00000087086|chr19:48966629-48966630|-/TATCA|frameshift_variant;ENSG00000087086|ENST00000331825|FTL	FTL|p.K143Ifs*9|1|0.37|ENSG00000087086|chr19:48966629-48966630|-/TATCA|frameshift_variant	FTL|p.K143Ifs*9|1|0.37|ENSG00000087086|chr19:48966629-48966630|-/TATCA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.745361328125	2	532.292756	1062.57096	0.36086	0.00019208	0.4591	0.00024437	0.81995	0.00043646	532.2930592357004	27.897	0.14886	27.897	27.839	27.988	0					9	5	2	0	0	0	0.41113	1	8637	8637		40.778	3.6191	1	142390			28612	1757	19383	19454	28989	28989					0.04217725614716983
NSLYLLHY	8	Unmodified	_NSLYLLHY_					0	0	0		ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	ENSG00000241322|ENST00000395906|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7675476074219	2	511.768917	1021.52328	-1.7302	-0.00088548	-1.2715	-0.0006507	-3.0017	-0.0015362	511.76836583988324	38.71	0.52635	38.71	38.458	38.984	0					66	27	3	0	0	0	0.61433	1	13887	13887		46.766	2.6496	1	514620			28613	7938	19384	19455	28990	28990					0.013380714145114325
NSLYQRLE	8	Unmodified	_NSLYQRLE_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7674865722656	2	511.766906	1021.51926	0.40484	0.00020718	0.78898	0.00040377	1.1938	0.00061096	511.76734267076546	38.781	0.6214	38.781	38.44	39.062	0					68	32	3	0	0	0	0.66095	1	13892	13892		39.253	0.49923	1	337360	+		28614	16144	19385	19456	28991	28991					0.009359819208157205
NSMGLFLQK	9	Unmodified	_NSMGLFLQK_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;FDFT1|p.N215S|1|0.21|ENSG00000079459|chr8:11826157-11826157|A/G|missense_variant	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7777099609375	2	519.276052	1036.53755	0.56458	0.00029317	0.058886	3.0578E-05	0.62346	0.00032375	519.2762186031935	39.249	0.2123	39.249	39.159	39.372	0					27	12	3	0	0	0	0.14578	1	12747	12747		68.846	24.729	1	141150			28615	1623	19386	19457	28992	28992					0.020744005711549107
NSMGLFLQK	9	Unmodified	_NSMGLFLQK_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;FDFT1|p.N215S|1|0.21|ENSG00000079459|chr8:11826157-11826157|A/G|missense_variant	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2767944335938	2	519.276052	1036.53755	0.060581	3.1458E-05	0.14936	7.756E-05	0.20994	0.00010902	519.2762820128845	39.563	0.42756	39.563	39.453	39.88	0					44	17	4	0	0	0	0.023928	1	15046	15046		115.49	51.96	1	1120700			28616	1623	19386	19457	28993	28993					0.020744005711549107
NSMGLFLQK	9	Unmodified	_NSMGLFLQK_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;FDFT1|p.N215S|1|0.21|ENSG00000079459|chr8:11826157-11826157|A/G|missense_variant	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2764892578125	2	519.276052	1036.53755	0.18331	9.5186E-05	0.89779	0.0004662	1.0811	0.00056139	519.2765855422102	39.303	0.21814	39.303	39.225	39.444	0					27	12	3	0	0	0	0.42902	1	13209	13209		39.253	7.298	1	201040			28617	1623	19386	19457	28994	28994					0.020744005711549107
NSMGLFLQK	9	Unmodified	_NSMGLFLQK_					0	0	0		ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;FDFT1|p.N215S|1|0.21|ENSG00000079459|chr8:11826157-11826157|A/G|missense_variant	ENSG00000079459|ENST00000220584|FDFT1	ENSG00000079459|ENST00000220584|FDFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.277587890625	2	519.276052	1036.53755	1.6295	0.00084616	-1.2129	-0.00062985	0.41655	0.0002163	519.2757405326166	39.513	0.3722	39.513	39.397	39.769	0					41	13	4	0	0	0	0.048471	1	15528	15528		95.815	16.103	1	1358800			28618	1623	19386	19457	28995	28995					0.020744005711549107
NSMRVMRL	8	Oxidation (M)	_NSMRVM(Oxidation (M))RL_		NSM(0.225)RVM(0.775)RL		NSM(-5.4)RVM(5.4)RL	0	0	1			REV__nc|ENSG00000011114|Q9P203-5|BTBD7	REV__nc|ENSG00000011114|Q9P203-5|BTBD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7673034667969	2	511.765329	1021.5161	3.1071	0.0015901	-0.20438	-0.0001046	2.9028	0.0014855	511.7656165520317	38.822	2.6369	38.822	38.466	41.103	0					108	56	3	0	0	0	0.58597	1	15256	15256		51.335	51.335	2	2185800	+		28619	12303	19387	19458	28996	28996		476			0.006206922708088314
NSNDVFVLK	9	Unmodified	_NSNDVFVLK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2774658203125	2	518.277106	1034.53966	1.3975	0.0007243	0.37951	0.00019669	1.777	0.00092099	518.2773268403429	36.344	0.30083	36.344	36.251	36.552	0					39	15	4	0	0	0	0.27249	1	11904	11904		52.937	10.541	1	498480			28620	3517;987	19388	19459	28997	28997					0.023771525806068894
NSNDVFVLK	9	Unmodified	_NSNDVFVLK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2772216796875	2	518.277106	1034.53966	1.3388	0.00069386	-0.83061	-0.00043049	0.50817	0.00026337	518.2765503289993	36.639	0.41959	36.639	36.532	36.952	0					35	11	5	0	0	0	0.0028263	1	13825	13825		169.65	71.023	1	4279700			28621	3517;987	19388	19459	28998	28998					0.023771525806068894
NSNDVFVLK	9	Unmodified	_NSNDVFVLK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2777709960938	2	518.277106	1034.53966	1.0658	0.00055235	-0.48826	-0.00025305	0.57749	0.0002993	518.27680919072	36.616	0.50902	36.616	36.472	36.981	0					45	15	5	0	0	0	0.0015666	1	14247	14247		177.3	72.558	1	6760700			28622	3517;987	19388	19459	28999	28999					0.023771525806068894
NSNDVFVLK	9	Unmodified	_NSNDVFVLK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.277587890625	2	518.277106	1034.53966	1.2704	0.00065842	-0.41264	-0.00021386	0.85777	0.00044456	518.2768750709004	36.38	0.36892	36.38	36.282	36.651	0					40	17	4	0	0	0	0.015992	1	13018	13018		128.6	51.285	1	1002400			28623	3517;987	19388	19459	29000	29000					0.023771525806068894
NSNDVFVLK	9	Unmodified	_NSNDVFVLK_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000006747|Q9Y6U3-3|SCIN	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2772827148438	2	518.277106	1034.53966	0.2549	0.00013211	0.30576	0.00015847	0.56066	0.00029058	518.2771635685696	36.588	0.56582	36.588	36.428	36.994	0					35	11	5	0	0	0	0.0028263	1	14218	14218		169.65	81.956	1	7726200			28624	3517;987	19388	19459	29001	29001					0.023771525806068894
NSNECVVCLS	10	Unmodified	_NSNECVVCLS_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;ENST00000588015.5_1_16:4721412-4726932:+|nuORF	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2291259765625	2	534.228442	1066.44233	1.1464	0.00061245	-0.68607	-0.00036652	0.46035	0.00024593	534.2283398900386	18.625	0.18784	18.625	18.545	18.733	0					19	6	4	0	0	0	0.41335	1	4655	4655		54.776	1.8396	1	461490			28625	2193	19389	19460	29002	29002					-0.08823320682176927
NSNKILNNK	9	Unmodified	_NSNKILNNK_					0	0	0			REV__tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	REV__tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7949829101562	2	522.793455	1043.57236	1.7975	0.00093973	2.4308	0.0012708	4.2284	0.0022106	522.794774778414	43.761	0.29177	43.761	43.685	43.976	0					20	14	2	0	0	0	0.35021	1	17081	17081		45.972	5.1941	1	105730	+		28626	21966	19390	19461	29003	29003					0.05231359703475391
NSNSLTVACP	10	Unmodified	_NSNSLTVACP_					0	0	0			REV__ENST00000555945.1_1_14:45431624-45465140:+|nuORF	REV__ENST00000555945.1_1_14:45431624-45465140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2370910644531	2	503.237124	1004.45969	0.13027	6.5555E-05	-0.50676	-0.00025502	-0.37649	-0.00018947	503.2370093676412	20.604	0.27421	20.604	20.477	20.751	0					8	6	2	0	0	0	0.58189	1	5833	5833		36.447	1.2947	1	234880	+		28627	17418	19391	19462	29004	29004					-0.042356570848937736
NSNTVVFVK	9	Unmodified	_NSNTVVFVK_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.27984619140625	2	504.279649	1006.54475	0.095851	4.8336E-05	0.18752	9.4565E-05	0.28338	0.0001429	504.2798735129494	28.787	0.16548	28.787	28.728	28.894	0					5	3	2	0	0	0	0.054723	1	10600	10600		93.598	45.638	1	240240			28628	1871	19392	19463	29005	29005					0.0417345644324314
NSPCPMMD	8	Carbamidomethyl (C)	_NSPC(Carbamidomethyl (C))PMMD_	NSPC(1)PMMD		NSPC(41)PMMD		0	1	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant;CCDC168|p.F3005Lfs*18|2|0.31|ENSG00000175820|chr13:102741682-102741682|A/-|frameshift_variant;CCDC168|p.T2792Dfs*27|1|0.25|ENSG00000175820|chr13:102742324-102742325|-/T|frameshift_variant;CCDC168|p.N2119Kfs*18|1|0.41|ENSG00000175820|chr13:102744340-102744341|-/T|frameshift_variant;CCDC168|p.M1116Nfs*6|1|0.25|ENSG00000175820|chr13:102747350-102747351|-/T|frameshift_variant;CCDC168|p.I1655Nfs*8|1|0.07|ENSG00000175820|chr13:102745733-102745734|-/AACTTAAAACAAT|frameshift_variant;CCDC168|p.N1192Tfs*3|1|0.1|ENSG00000175820|chr13:102747122-102747122|T/-|frameshift_variant;CCDC168|p.M1116Wfs*8|1|0.14|ENSG00000175820|chr13:102747351-102747351|T/-|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.1724548339844	2	476.172081	950.329609	-0.42236	-0.00020112	1.191	0.00056714	0.76868	0.00036602	476.17266445060176	18.635	0.21754	18.635	18.527	18.745	0					7	4	2	0	0	0	0.65276	1	5763	5763		40.573	7.7602	1	320590			28629	6578	19393	19464	29006	29006	281				-0.147542926798792
NSPDIHIVQ	9	Unmodified	_NSPDIHIVQ_					0	0	0		MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant;ENSG00000138347|ENST00000358913|MYPN;MYPN|p.K575Nfs*9|1|0.23|ENSG00000138347|chr10:68166410-68166410|C/-|frameshift_variant;nc|ENSG00000138347|Q86TC9-2|MYPN	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7667541503906	2	511.766906	1021.51926	1.0382	0.00053133	-0.58339	-0.00029856	0.45484	0.00023277	511.7666484354882	38.98	0.69187	38.98	38.687	39.378	0					77	25	5	0	0	0	0.24095	1	14755	14755		56.721	5.3856	1	679450			28630	4247	19394	19465	29007	29007					0.009359819208157205
NSPEKACSL	9	Carbamidomethyl (C)	_NSPEKAC(Carbamidomethyl (C))SL_	NSPEKAC(1)SL		NSPEKAC(57)SL		0	1	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB;ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.23687744140625	2	503.237124	1004.45969	0.74118	0.00037299	-1.8121	-0.00091193	-1.071	-0.00053894	503.2365323494147	20.822	0.24297	20.822	20.699	20.942	0					14	5	4	0	0	0	0.24169	1	6528	6528		56.632	8.7166	1	792760			28631	5946;5741	19395	19466	29008	29008	241				-0.04235657084871036
NSPEKACSL	9	Carbamidomethyl (C)	_NSPEKAC(Carbamidomethyl (C))SL_	NSPEKAC(1)SL		NSPEKAC(74)SL		0	1	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB;ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.23736572265625	2	503.237124	1004.45969	1.175	0.00059131	-1.4012	-0.00070515	-0.22622	-0.00011384	503.2366798584796	20.735	0.16798	20.735	20.626	20.793	0					11	3	4	0	0	0	0.12278	1	6644	6644		74.165	14.047	1	1427100			28632	5946;5741	19395	19466	29009	29009	241				-0.04235657084871036
NSPFLLSPPQ	10	Unmodified	_NSPFLLSPPQ_					0	0	0		ENST00000603542.5_1_20:10200008-10200131:-|nuORF	ENST00000603542.5_1_20:10200008-10200131:-|nuORF	ENST00000603542.5_1_20:10200008-10200131:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.1976318359375	3	367.197596	1098.57096	-0.17918	-6.5794E-05	-0.15423	-5.6633E-05	-0.33341	-0.00012243	367.19767283244147	31.578	1.421	31.578	31.471	32.892	0					76	28	7	0	0	0	0.71484	1	12240	12240		19.263	5.1256	1	33912000			28633	11054	19396	19467	29010	29010					0.025617256147143053
NSPLRENAL	9	Unmodified	_NSPLRENAL_					0	0	0		TSHZ3|p.A877Pfs*28|1|0.2|ENSG00000121297|chr19:31277164-31277164|C/-|frameshift_variant;TSHZ3|p.M1028Nfs*30|1|0.15|ENSG00000121297|chr19:31276710-31276711|-/T|frameshift_variant;TSHZ3|p.E1034Rfs*45|1|0.07|ENSG00000121297|chr19:31276694-31276694|G/-|frameshift_variant;ENSG00000121297|ENST00000240587|TSHZ3	TSHZ3|p.A877Pfs*28|1|0.2|ENSG00000121297|chr19:31277164-31277164|C/-|frameshift_variant	TSHZ3|p.A877Pfs*28|1|0.2|ENSG00000121297|chr19:31277164-31277164|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2721252441406	2	507.272355	1012.53016	-0.033439	-1.6963E-05	-0.18859	-9.5665E-05	-0.22203	-0.00011263	507.2720059785329	28.674	0.44976	28.674	28.396	28.846	0					24	11	3	0	0	0	0.28897	1	10151	10151		51.193	4.4263	1	558700			28634	3219	19397	19468	29011	29011					0.02439384295075797
NSPPECED	8	Unmodified	_NSPPECED_					0	0	0			REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.1658020019531	2	445.663457	889.312362	0.81622	0.00036376	0.98771	0.00044018	1.8039	0.00080394	445.6658000939626	49.905	0.50085	49.905	49.696	50.197	0					81	22	5	0	0	0	0.8006	1	19672	19672		20.482	1.1219	1	967510	+		28635	13200	19398	19469	29012	29012					-0.13672173689690226
NSPPECED	8	Unmodified	_NSPPECED_					0	0	0			REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.666259765625	2	445.663457	889.312362	2.5778	0.0011488	-0.95328	-0.00042484	1.6245	0.00072398	445.6647861762647	49.889	0.47003	49.889	49.691	50.161	0					81	21	6	0	0	0	0.76283	1	19667	19667		25.45	11.675	1	2078800	+		28636	13200	19398	19469	29013	29013					-0.13672173689690226
NSPRVGLI	8	Unmodified	_NSPRVGLI_					0	0	0			REV__SCAF8|p.L984*|1|0.58|ENSG00000213079|chr6:154832525-154832525|T/-|frameshift_variant	REV__SCAF8|p.L984*|1|0.58|ENSG00000213079|chr6:154832525-154832525|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.2581481933594	2	428.255977	854.497401	2.4743	0.0010596	2.1392	0.00091612	4.6135	0.0019757	428.2568887280054	43.465	0.17303	43.465	43.378	43.551	0					11	6	2	0	0	0	0.65276	1	17378	17378		40.573	5.3719	1	124220	+		28637	17554	19399	19470	29014	29014					0.0643322196290228
NSPVGNQL	8	Unmodified	_NSPVGNQL_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.7142639160156	2	414.714142	827.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.581	1	29.581	29.081	30.081	0								0	0	0	1.7419	1	9352	9352		34.173	5.023	1				28638	1030	19400	19471	29015	29015					-0.006879342048137005
NSQIQRATAH	10	Unmodified	_NSQIQRATAH_					0	0	0		nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.7977905273438	2	563.291611	1124.56867	0.90619	0.00051045	-1.9218	-0.0010825	-1.0156	-0.00057207	563.2894435248832	28.798	0.21072	28.798	28.639	28.85	0					11	5	3	0	0	0	0.65051	1	9563	9563		28.081	2.5074	1	143330			28639	11425	19401	19472	29016	29016					0.011366899296263
NSQSSSCNGAL	11	Unmodified	_NSQSSSCNGAL_					0	0	0		CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant;CLMN|p.K865Rfs*10|2|0.35|ENSG00000165959|chr14:95196612-95196612|T/-|frameshift_variant;ENSG00000165959|ENST00000298912|CLMN;ENST00000556454.1_1_14:95660863-95677170:-|nuORF	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2289428710938	2	534.224745	1066.43494	3.3813	0.0018064	3.7942	0.0020269	7.1755	0.0038333	534.2271420554305	18.872	0.24684	18.872	18.784	19.031	0					14	5	4	0	0	0	0.47622	1	5741	5741		45.972	1.5951	1	1790000			28640	557	19402	19473	29017	29017					-0.09562336958242668
NSQYPRMRE	9	Unmodified	_NSQYPRMRE_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.77978515625	2	590.780022	1179.54549	0.12392	7.3209E-05	-1.017	-0.00060082	-0.89308	-0.00052761	590.7794760361497	36.817	0.16515	36.817	36.774	36.939	0					12	8	2	0	0	0	0.48623	1	12067	12067		33.922	6.0394	1	46264	+		28641	14036	19403	19474	29018	29018					-0.03710072179364943
NSRFKETAEI	10	Unmodified	_NSRFKETAEI_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.8133544921875	2	597.809302	1193.60405	3.1629	0.0018908	1.3973	0.00083529	4.5602	0.0027261	597.8101499036952	26.829	0.92325	26.829	26.722	27.645	0					47	18	4	0	0	0	0.36432	1	9541	9541		56.434	0	1	1613900	+		28642	13492	19404	19475	29019	29019					0.014993076667678906
NSRLTSLK	8	Unmodified	_NSRLTSLK_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.77178955078125	2	459.771991	917.529429	0.81359	0.00037407	-1.2935	-0.00059471	-0.4799	-0.00022064	459.771435794242	19.877	0.15274	19.877	19.784	19.937	0					5	3	2	0	0	0	0.39125	1	6087	6087		71.877	0	1	1014300	+		28643	14733	19405	19476	29020	29020					0.06736589646038738
NSRRREPI	8	Unmodified	_NSRRREPI_					0	0	0		ENST00000525307.1_1_11:7693939-7694113:-|nuORF;ENST00000526084.1_1_11:7693541-7694179:-|nuORF;CYB5R2|p.T145Hfs*8|1|0.13|ENSG00000166394|chr11:7668517-7668517|T/-|frameshift_variant;ENST00000534443.5_1_11:7688946-7694113:-|nuORF;nc|ENSG00000166394|Q6BCY4-2|CYB5R2;ENSG00000166394|ENST00000299498|CYB5R2	ENST00000525307.1_1_11:7693939-7694113:-|nuORF	ENST00000525307.1_1_11:7693939-7694113:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.19781494140625	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.876	1	46.876	46.376	47.376	0								0	0	0	1.7419	1	18738	18738		17.365	0.64758	1				28644	724	19406	19477	29021	29021					0.0560531500043453
NSRTGKPMP	9	Oxidation (M)	_NSRTGKPM(Oxidation (M))P_		NSRTGKPM(1)P		NSRTGKPM(46)P	0	0	1		ENSG00000124772|ENST00000244751|CPNE5	ENSG00000124772|ENST00000244751|CPNE5	ENSG00000124772|ENST00000244751|CPNE5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.75579833984375	2	502.253108	1002.49166	2.926	0.0014696	2.2732	0.0011417	5.1992	0.0026113	502.2546621635251	24.221	0.71416	24.221	23.65	24.364	0					31	14	3	0	0	0	0.35045	1	8208	8208		45.952	8.7928	1	3353000			28645	3394	19407	19478	29022	29022		146			-0.009482446110723686
NSSDMVNKMEE	11	Unmodified	_NSSDMVNKMEE_					0	0	0			REV__CD109|p.Q424Kfs*20|1|0.29|ENSG00000156535|chr6:73766088-73766088|C/-|frameshift_variant	REV__CD109|p.Q424Kfs*20|1|0.29|ENSG00000156535|chr6:73766088-73766088|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	642.2659301757812	2	642.265752	1282.51695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.901	1	12.901	12.401	13.401	0								0	0	0	0.45674	1	3016	3016		12.812	1.3007	1		+		28646	12380	19408	19479	29023	29023					-0.1130060266145847
NSSEALLLSI	10	Unmodified	_NSSEALLLSI_					0	0	0		tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7907104492188	2	523.790047	1045.56554	0.090025	4.7154E-05	0.79312	0.00041543	0.88315	0.00046259	523.7904824271376	41.995	0.10474	41.995	41.938	42.043	0					8	5	2	0	0	0	0.65051	1	15932	15932		28.081	0	1	82047			28647	22716	19409	19480	29024	29024					0.0445800203226554
NSSLCQYIIQI	11	Unmodified	_NSSLCQYIIQI_					0	0	0			REV__nc|ENSG00000253309|A8MV23|SERPINE3	REV__nc|ENSG00000253309|A8MV23|SERPINE3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	641.3282470703125	2	641.329013	1280.64347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.466	1	38.466	37.966	38.966	0								0	0	0	0.44926	1	12543	12543		26.063	3.4837	1		+		28648	21231	19410	19481	29025	29025					0.014376916259834616
NSSSAKDNSI	10	Unmodified	_NSSSAKDNSI_					0	0	0		ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	ENSG00000038427|ENST00000265077|VCAN	ENSG00000038427|ENST00000265077|VCAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.74298095703125	2	511.741085	1021.46762	3.1038	0.0015884	0.80947	0.00041424	3.9133	0.0020026	511.7415527018959	37.039	0.80303	37.039	36.647	37.45	0					42	16	3	0	0	0	0.30252	1	14370	14370		66.962	0.53265	1	1471400			28649	1183	19411	19482	29026	29026					-0.04225806563761125
NSSSTTSAPES	11	Unmodified	_NSSSTTSAPES_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3	REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2288208007812	2	534.228007	1066.44146	-1.3295	-0.00071026	2.6878	0.0014359	1.3582	0.00072561	534.2299136811611	18.712	0.16551	18.712	18.638	18.803	0					10	4	3	0	0	0	0.49805	1	4926	4926		44.377	0.26039	1	350510	+		28650	20989	19412	19483	29027	29027					-0.08910120525888487
NSSTISLTSK	10	Unmodified	_NSSTISLTSK_					0	0	0		ADAMTS20|p.G1673Wfs*18|1|0.26|ENSG00000173157|chr12:43376632-43376633|-/A|frameshift_variant;ADAMTS20|p.N1722Tfs*17|1|0.48|ENSG00000173157|chr12:43376291-43376291|T/-|frameshift_variant;nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20	ADAMTS20|p.G1673Wfs*18|1|0.26|ENSG00000173157|chr12:43376632-43376633|-/A|frameshift_variant	ADAMTS20|p.G1673Wfs*18|1|0.26|ENSG00000173157|chr12:43376632-43376633|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2759399414062	2	519.277303	1036.54005	-1.3707	-0.00071175	-0.23271	-0.00012084	-1.6034	-0.00083259	519.2772077957854	39.32	0.27684	39.32	39.214	39.491	0					24	15	3	0	0	0	0.5155	1	14008	14008		43.651	2.2242	1	191510			28651	58	19413	19484	29028	29028					0.02324527509813379
NSTAWGVVTL	10	Unmodified	_NSTAWGVVTL_					0	0	0			REV__ENSG00000121578|ENST00000393765|B4GALT4	REV__ENSG00000121578|ENST00000393765|B4GALT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.853759765625	3	349.85383	1046.53966	0.51076	0.00017869	-0.44918	-0.00015715	0.061576	2.1543E-05	349.8537089847592	19.106	0.56191	19.106	18.85	19.412	0					39	11	5	0	0	0	0.6796	1	5901	5901		23.378	23.378	1	9376300	+		28652	14313	19414	19485	29029	29029					0.018251525806363134
NSTFNQVVLK	10	Unmodified	_NSTFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.3167114257812	2	575.316763	1148.61897	0.055884	3.2151E-05	-0.34017	-0.00019571	-0.28429	-0.00016356	575.3163994723384	33.324	0.20729	33.324	33.21	33.418	0					12	8	2	0	0	0	0.61238	1	11168	11168		32.751	1.2207	1	100160			28653	1338	19415	19486	29030	29030					0.05060799534749094
NSTFNQVVLK	10	Unmodified	_NSTFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.3171997070312	2	575.316763	1148.61897	1.8763	0.0010795	-1.7554	-0.0010099	0.12094	6.9577E-05	575.3154712726124	33.519	0.4701	33.519	33.22	33.69	0					22	11	4	0	0	0	0.12383	1	12832	12832		91.265	40.073	1	449650			28654	1338	19415	19486	29031	29031					0.05060799534749094
NSTFNQVVLK	10	Unmodified	_NSTFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.3171997070312	2	575.316763	1148.61897	1.6838	0.00096873	-1.1757	-0.00067639	0.50814	0.00029234	575.3161164149989	33.476	0.31827	33.476	33.332	33.65	0					15	6	3	0	0	0	0.20981	1	12749	12749		78.264	30.606	1	495200			28655	1338	19415	19486	29032	29032					0.05060799534749094
NSTRRHLF	8	Unmodified	_NSTRRHLF_					0	0	0		nc|ENSG00000147485|A1KZ92-2|PXDNL;PXDNL|p.T1359Qfs*25|1|0.33|ENSG00000147485|chr8:51339695-51339695|T/-|frameshift_variant;ENSG00000147485|ENST00000356297|PXDNL	nc|ENSG00000147485|A1KZ92-2|PXDNL	nc|ENSG00000147485|A1KZ92-2|PXDNL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	344.1891174316406	3	344.189547	1029.54681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.691	1	21.691	21.191	22.191	0								0	0	0	1.7419	1	6013	6013		17.365	0	1				28656	4784	19416	19487	29033	29033					0.03321929971684767
NSTSPPLKL	9	Unmodified	_NSTSPPLKL_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7740478515625	2	478.7742	955.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.229	1	37.229	36.729	37.729	0								0	0	0	0.19847	1	14550	14550		51.193	3.5354	1				28657	3370	19417	19488	29034	29034					0.054300540689382615
NSVAPLDSI	9	Unmodified	_NSVAPLDSI_					0	0	0			REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF	REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2428283691406	2	458.242732	914.470912	0.87956	0.00040305	-0.31268	-0.00014328	0.56689	0.00025977	458.24267886225647	33.642	0.21629	33.642	33.483	33.7	0					11	4	3	0	0	0	0.2873	1	12822	12822		51.335	1.8939	1	481570	+		28658	13770	19418	19489	29035	29035					0.010254882809135779
NSVDAAKPLL	10	Unmodified	_NSVDAAKPLL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.1975402832031	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.505	1	56.505	56.005	57.005	0								0	0	0	0.38879	1	19397	19397		33.922	11.342	1				28659	3612	19419	19490	29036	29036					0.058737256147196604
NSVFAVNQAV	10	Unmodified	_NSVFAVNQAV_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant;NPAT|p.K1038Efs*20|1|0.37|ENSG00000149308|chr11:108161974-108161975|-/C|frameshift_variant;NPAT|p.H1279Qfs*13|1|0.22|ENSG00000149308|chr11:108161248-108161249|TA/-|frameshift_variant;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7783813476562	2	524.774731	1047.53491	0.58722	0.00030816	3.588	0.0018829	4.1753	0.0021911	524.7768694355619	23.068	0.21594	23.068	22.971	23.187	0					14	7	3	0	0	0	0.56063	1	6875	6875		38.754	2.3069	1	155540			28660	4877	19420	19491	29037	29037					0.013042684378433478
NSVGSVHSY	9	Unmodified	_NSVGSVHSY_					0	0	0		nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2220153808594	2	475.222331	948.430109	-1.5692	-0.00074571	0.86737	0.00041219	-0.70181	-0.00033351	475.2227855415338	21.952	0.12556	21.952	21.889	22.015	0					6	4	2	0	0	0	0.39215	1	6394	6394		42.396	0.96952	1	76173			28661	7613	19421	19492	29038	29038					-0.046168530387149076
NSVHTGCCM	9	Unmodified	_NSVHTGCCM_					0	0	0			REV__ENST00000486664.5_1_17:41107347-41108531:-|nuORF	REV__ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.1795654296875	2	476.177698	950.340842	-0.37182	-0.00017705	0.69073	0.00032891	0.31891	0.00015186	476.17958747985347	49.662	0.69644	49.662	49.418	50.115	0					109	28	5	0	0	0	0.61124	1	18010	18010		16.473	0	1	1087300	+		28662	17795	19422	19493	29039	29039					-0.1363147058573304
NSVSLCYVI	9	Unmodified	_NSVSLCYVI_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2548522949219	2	499.254785	996.495018	-2.1736	-0.0010852	2.3528	0.0011746	0.17916	8.9445E-05	499.2558571775788	29.801	0.14844	29.801	29.717	29.865	0					8	4	2	0	0	0	0.13267	1	10059	10059		71.877	15.156	1	107520	+		28663	20134	19423	19494	29040	29040					-0.003369945570852906
NTAAPQPA	8	Unmodified	_NTAAPQPA_					0	0	0			REV__nc|ENSG00000017260|P98194-4|ATP2C1	REV__nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.1953430175781	2	385.195585	768.376617	0.84796	0.00032663	-0.82395	-0.00031738	0.024012	9.2492E-06	385.19523803321607	15.752	0.21209	15.752	15.658	15.87	0					12	5	3	0	0	0	0.70055	1	4125	4125		33.516	1.5607	1	278530	+		28664	12928	19424	19495	29041	29041					-0.01683605750577044
NTALFQLGSA	10	Unmodified	_NTALFQLGSA_					0	0	0		NLRP7|p.A354T|1|0.38|ENSG00000167634|chr19:54939759-54939759|C/T|missense_variant	NLRP7|p.A354T|1|0.38|ENSG00000167634|chr19:54939759-54939759|C/T|missense_variant	NLRP7|p.A354T|1|0.38|ENSG00000167634|chr19:54939759-54939759|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2713623046875	2	511.269281	1020.52401	4.1162	0.0021045	0.017639	9.0184E-06	4.1338	0.0021135	511.26935869612544	29.443	0.27247	29.443	29.335	29.608	0					22	10	3	0	0	0	0.50881	1	9568	9568		44.377	44.377	1	300850			28665	11860	19425	19496	29042	29042					0.0145686606357458
NTAPHVVM	8	Unmodified	_NTAPHVVM_					0	0	0		ENST00000470383.1_1_1:24124993-24125323:-|nuORF	ENST00000470383.1_1_1:24124993-24125323:-|nuORF	ENST00000470383.1_1_1:24124993-24125323:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7204895019531	2	434.720913	867.427273	0.35575	0.00015465	-1.2922	-0.00056175	-0.93645	-0.00040709	434.7205266127949	27.739	0.77897	27.739	27.586	28.365	0					42	16	5	0	0	0	0.77246	1	10279	10279		24.203	1.1603	1	9201400			28666	9839	19426	19497	29043	29043					-0.011743996972199966
NTAVSQLTK	9	Unmodified	_NTAVSQLTK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;SMC4|p.R512C|1|0.25|ENSG00000113810|chr3:160417819-160417819|C/T|missense_variant	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2696228027344	2	481.269281	960.52401	-0.10688	-5.144E-05	0.43666	0.00021015	0.32978	0.00015871	481.2695145620895	11.838	0.11272	11.838	11.771	11.884	0					8	3	3	0	0	0	0.1424	1	2512	2512		69.628	4.1622	1	122800			28667	2826	19427	19498	29044	29044					0.042168660635638844
NTDAENQAKE	10	Unmodified	_NTDAENQAKE_					0	0	0			REV__CATSPER1|p.S275Vfs*60|1|0.12|ENSG00000175294|chr11:66025558-66025558|G/-|frameshift_variant	REV__CATSPER1|p.S275Vfs*60|1|0.12|ENSG00000175294|chr11:66025558-66025558|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.2476196289062	2	560.249274	1118.484	1.282	0.00071825	-0.8236	-0.00046142	0.45842	0.00025683	560.2489732586375	39.179	0.1221	39.179	39.078	39.2	0					11	7	2	0	0	0	0.58308	1	12731	12731		36.318	0.69936	1	59705	+		28668	12337	19428	19499	29045	29045					-0.07050725397652968
NTDLRLKR	8	Unmodified	_NTDLRLKR_					0	0	0			REV__nc|ENSG00000167984|Q7RTR2-3|NLRC3	REV__nc|ENSG00000167984|Q7RTR2-3|NLRC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.3041076660156	2	508.30399	1014.59343	0.91553	0.00046537	-1.2433	-0.000632	-0.32781	-0.00016663	508.303633299223	14.15	0.10135	14.15	14.112	14.213	0					7	4	2	0	0	0	0.73426	1	2874	2874		29.15	3.5755	1	107960	+		28669	16229	19429	19500	29046	29046					0.08671369802982554
NTEDRILK	8	Unmodified	_NTEDRILK_					0	0	0		nc|ENSG00000164509|Q8NI17-6|IL31RA;nc|ENSG00000164509|Q8NI17-3|IL31RA;nc|ENSG00000164509|Q8NI17-5|IL31RA;nc|ENSG00000164509|Q8NI17|IL31RA;nc|ENSG00000164509|Q8NI17-12|IL31RA;ENSG00000164509|ENST00000652347|IL31RA;IL31RA|p.V618A|1|0.14|ENSG00000164509|chr5:55916678-55916678|T/C|missense_variant	nc|ENSG00000164509|Q8NI17-6|IL31RA	nc|ENSG00000164509|Q8NI17-6|IL31RA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7745056152344	2	494.774731	987.534909	2.8181	0.0013943	-2.866	-0.001418	-0.047941	-2.372E-05	494.7733403844016	19.318	0.21273	19.318	19.212	19.425	0					12	4	4	0	0	0	0.24383	1	5961	5961		112.41	0.30369	1	1336600			28670	5700	19430	19501	29047	29047					0.040642684378553895
NTEKLLRGY	9	Unmodified	_NTEKLLRGY_					0	0	0			REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000179542|ENST00000356928|SLITRK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.3036499023438	2	547.303655	1092.59276	1.1409	0.00062443	0.52634	0.00028807	1.6672	0.00091249	547.3035395678618	26.226	0.13794	26.226	26.121	26.259	0					6	3	2	0	0	0	0.35021	1	8399	8399		45.972	1.5951	1	67354	+		28671	16778	19431	19502	29048	29048					0.0501653036328662
NTELVKSPSE	10	Unmodified	_NTELVKSPSE_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.P340Lfs*35|1|0.38|ENSG00000058600|chr16:22322880-22322880|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.2828369140625	2	552.282586	1102.55062	0.60561	0.00033447	-0.29857	-0.00016489	0.30704	0.00016957	552.2824158249787	28.586	0.29461	28.586	28.435	28.73	0					18	7	3	0	0	0	0.36647	1	10133	10133		59.931	6.3339	1	266820			28672	1304	19432	19503	29049	29049					0.0034451016424554837
NTFLLLFHIF	10	Unmodified	_NTFLLLFHIF_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2398986816406	3	422.241137	1263.70158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.118	1	18.118	17.618	18.618	0								0	0	0	0.41137	1	4681	4681		27.047	4.4677	1				28673	11779	19433	19504	29050	29050					0.08027741333535232
NTFLSTEYIK	10	Unmodified	_NTFLSTEYIK_					0	0	0		tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1	tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1	tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	608.3145751953125	2	608.316428	1214.6183	-1.9498	-0.0011861	-1.0126	-0.00061601	-2.9625	-0.0018021	608.315816544029	21.383	0.1535	21.383	21.329	21.482	0					9	3	4	0	0	0	0.3029	1	6197	6197		82.75	82.75	1	858980			28674	22664	19434	19505	29051	29051					0.019579600950464737
NTFNYTLVL	9	Unmodified	_NTFNYTLVL_					0	0	0			REV__TSLP|p.D30N|2|0.27|ENSG00000145777|chr5:111071978-111071978|G/A|missense_variant	REV__TSLP|p.D30N|2|0.27|ENSG00000145777|chr5:111071978-111071978|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7880249023438	2	542.787307	1083.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.555	1	49.555	49.055	50.055	0								0	0	0	0.30009	1	19595	19595		27.882	0	1		+		28675	22242	19435	19506	29052	29052					0.02162323240418118
NTFPSATFGA	10	Unmodified	_NTFPSATFGA_					0	0	0			REV__CDC14A|p.P551Qfs*30|1|0.33|ENSG00000079335|chr1:100499154-100499154|C/-|frameshift_variant	REV__CDC14A|p.P551Qfs*30|1|0.33|ENSG00000079335|chr1:100499154-100499154|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7400207519531	2	506.740357	1011.46616	-0.2123	-0.00010758	0.08238	4.1745E-05	-0.12992	-6.5837E-05	506.74041302535176	36.639	0.26596	36.639	36.529	36.795	0					11	5	3	0	0	0	0.43008	1	14267	14267		52.937	6.9645	1	203160	+		28676	12386	19436	19507	29053	29053					-0.03911395861848632
NTGIAPGVP	9	Unmodified	_NTGIAPGVP_					0	0	0			REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2	REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.22698974609375	2	413.226885	824.439217	-1.4528	-0.00060033	1.373	0.00056736	-0.079789	-3.2971E-05	413.22746700145893	23.702	0.16167	23.702	23.612	23.773	0					11	5	3	0	0	0	0.47038	1	7135	7135		35.618	0.41757	1	243280	+		28677	15049	19437	19508	29054	29054					0.019975403176204054
NTGRHVSLR	9	Unmodified	_NTGRHVSLR_					0	0	0		nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2928466796875	2	520.291414	1038.56827	3.3709	0.0017538	-0.54363	-0.00028284	2.8272	0.001471	520.2909283724775	36.856	0.45547	36.856	36.698	37.154	0					22	9	4	0	0	0	0.40353	1	14345	14345		41.427	3.6151	1	3006300			28678	5110	19438	19509	29055	29055					0.05053315000395742
NTGRLAGCTV	10	Unmodified	_NTGRLAGCTV_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2;nc|ENSG00000119471|Q6YN16-2|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2514953613281	2	496.253108	990.491664	-2.3721	-0.0011772	-0.27023	-0.0001341	-2.6423	-0.0013113	496.2528246045537	21.525	0.24356	21.525	21.329	21.572	0					13	5	3	0	0	0	0.49411	1	6243	6243		45.972	1.5951	1	264400			28679	3117	19439	19510	29056	29056					-0.003962446110676865
NTIDPSHPM	9	Unmodified	_NTIDPSHPM_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.23187255859375	2	506.231842	1010.44913	0.78046	0.00039509	-0.68888	-0.00034873	0.091585	4.6363E-05	506.23170469732725	27.723	0.51413	27.723	27.401	27.915	0					44	16	4	0	0	0	0.13267	2	8642	8493;8642		71.877	22.436	1	477260			28680	1843	19440	19511	29057;29058	29058					-0.05567639739308561
NTIDPSHPM	9	Unmodified	_NTIDPSHPM_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2319641113281	2	506.231842	1010.44913	0.14012	7.0932E-05	-0.26409	-0.00013369	-0.12397	-6.276E-05	506.2319037098583	27.972	0.63835	27.972	27.569	28.207	0					28	13	3	0	0	0	0.019882	1	10156	10156		122.18	48.201	1	747310			28681	1843	19440	19511	29059	29059					-0.05567639739308561
NTIDPSHPM	9	Unmodified	_NTIDPSHPM_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.2320251464844	2	506.231842	1010.44913	0.23948	0.00012123	-0.14884	-7.5348E-05	0.090637	4.5883E-05	506.2319951216717	27.781	0.47544	27.781	27.505	27.981	0					28	11	3	0	0	0	0.14603	1	9058	9058		68.787	10.976	1	225790			28682	1843	19440	19511	29060	29060					-0.05567639739308561
NTIDPSHPM	9	Unmodified	_NTIDPSHPM_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.23126220703125	2	506.231842	1010.44913	0.10148	5.1374E-05	-0.91328	-0.00046233	-0.81179	-0.00041096	506.23151080739643	27.791	0.51017	27.791	27.454	27.964	0					25	12	3	0	0	0	0.12239	1	9111	9111		74.255	5.7703	1	246140			28683	1843	19440	19511	29061	29061					-0.05567639739308561
NTIDPSHPM	9	Unmodified	_NTIDPSHPM_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2322082519531	2	506.231842	1010.44913	-0.24163	-0.00012232	-0.086586	-4.3832E-05	-0.32821	-0.00016615	506.23195993203984	27.921	0.81725	27.921	27.51	28.327	0					53	16	5	0	0	0	0.055856	2	9943	9943;10134		93.195	19.221	1	2659600			28684	1843	19440	19511	29062;29063	29062					-0.05567639739308561
NTIEMQAITAL	11	Unmodified	_NTIEMQAITAL_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.2132263183594	3	402.212918	1203.61692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.06	1	29.06	28.56	29.56	0								0	0	0	0.45344	1	10719	10719		25.126	0	1				28685	2504	19441	19512	29064	29064					0.023260027346395873
NTIGLIYEK	9	Unmodified	_NTIGLIYEK_					0	0	0		TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant;ENSG00000183735|ENST00000331710|TBK1;ENST00000536906.1_1_12:64878248-64879302:+|nuORF	TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant	TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7951049804688	2	525.795132	1049.57571	0.098071	5.1565E-05	-0.058989	-3.1016E-05	0.039082	2.0549E-05	525.7947941513472	36.039	0.16462	36.039	35.93	36.095	0					7	4	2	0	0	0	0.34452	1	13578	13578		46.457	7.2039	1	118230			28686	6980	19442	19513	29065	29065					0.05290609757457787
NTILEVVSYD	10	Unmodified	_NTILEVVSYD_					0	0	0			REV__tr|U7T1U1|U7T1U1_FUSNUCellshape-determiningproteinMreCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00580PE=3SV=1	REV__tr|U7T1U1|U7T1U1_FUSNUCellshape-determiningproteinMreCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00580PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.79345703125	2	576.792786	1151.57102	1.7839	0.0010289	-1.0645	-0.00061402	0.71937	0.00041492	576.7920530697364	40.366	0.19943	40.366	40.273	40.473	0					11	8	2	0	0	0	0.54197	1	15899	15899		40.778	0.71999	1	99181	+		28687	22083	19443	19514	29066	29066					0.0012968082405677706
NTIQPFPFQ	9	Unmodified	_NTIQPFPFQ_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2772827148438	2	546.279649	1090.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.123	1	12.123	11.623	12.623	0								0	0	0	0.30504	1	2507	2507		34.173	0.65696	1		+		28688	12745	19444	19515	29067	29067					0.003094564432331026
NTIRTCSNPF	10	Carbamidomethyl (C)	_NTIRTC(Carbamidomethyl (C))SNPF_	NTIRTC(1)SNPF		NTIRTC(43)SNPF		0	1	0		CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant;ENSG00000150938|ENST00000280527|CRIM1	CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.2871704101562	2	605.287679	1208.56081	0.41612	0.00025187	-1.4982	-0.00090686	-1.0821	-0.00065499	605.2866654548544	13.013	0.35718	13.013	12.787	13.144	0					17	8	3	0	0	0	0.52275	1	3075	3075		42.864	6.4175	1	634190			28689	694	19445	19516	29068	29068	23				-0.03513205382182605
NTITMIPNTLT	11	Unmodified	_NTITMIPNTLT_					0	0	0		ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X	ENSG00000146938|ENST00000381095|NLGN4X	ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.8837890625	3	406.884801	1217.63257	-0.56064	-0.00022812	-1.0398	-0.00042309	-1.6005	-0.0006512	406.8842388917121	17.438	0.40841	17.438	17.342	17.751	0					12	8	3	0	0	0	0.52595	1	5045	5045		42.338	8.4164	1	246880			28690	4756	19446	19517	29069	29069					0.03246289251706003
NTIVLMMK	8	Oxidation (M)	_NTIVLM(Oxidation (M))MK_		NTIVLM(0.5)M(0.5)K		NTIVLM(0)M(0)K	0	0	1		nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;CACNA1A|p.Q1743Pfs*29|1|0.24|ENSG00000141837|chr19:13234944-13234945|-/A|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;CACNA1A|p.P2221Rfs*45|1|0.48|ENSG00000141837|chr19:13208879-13208879|A/-|frameshift_variant;nc|ENSG00000141837|O00555-2|CACNA1A	nc|ENSG00000141837|O00555-6|CACNA1A	nc|ENSG00000141837|O00555-6|CACNA1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.51019287109375	3	322.51013	964.508559	-0.66762	-0.00021532	1.1302	0.0003645	0.46258	0.00014919	322.5104209813024	21.006	0.14456	21.006	20.927	21.071	0					11	4	3	0	0	0	0.6088	1	5969	5969		47.657	8.4045	2	509660			28691	4472	19447	19518	29070	29070		185;186			0.024885399505137684
NTKEIQAV	8	Unmodified	_NTKEIQAV_					0	0	0		WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7503356933594	2	451.750724	901.486896	-1.1916	-0.00053831	0.33393	0.00015085	-0.85768	-0.00038746	451.7510455820544	23.962	0.18428	23.962	23.879	24.064	0					11	6	2	0	0	0	0.50061	1	7265	7265		60.118	3.3972	1	121910			28692	6321	19448	19519	29071	29071					0.03221194517800541
NTKEVPKL	8	Unmodified	_NTKEVPKL_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.77679443359375	2	464.776742	927.538931	-0.78298	-0.00036391	0.20811	9.6726E-05	-0.57487	-0.00026719	464.7767235835763	26.842	0.25682	26.842	26.767	27.024	0					25	9	4	0	0	0	0.6088	1	8475	8475		47.657	4.7931	1	545220	+		28693	13995	19449	19520	29072	29072					0.07226357931563143
NTKPTQVL	8	Unmodified	_NTKPTQVL_					0	0	0		nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6	nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-7|ITGA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.76019287109375	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.076	1	45.076	44.576	45.576	0								0	0	0	1.7419	1	17481	17481		54.776	5.3348	1				28694	1856	19450	19521	29073	29073					0.053857848974644185
NTKSHQIF	8	Unmodified	_NTKSHQIF_					0	0	0			REV__ENSG00000124570|ENST00000380539|SERPINB6	REV__ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7568664550781	2	487.756341	973.498129	0.80273	0.00039153	-0.23027	-0.00011232	0.57245	0.00027922	487.75624656721556	34.047	0.40383	34.047	33.94	34.344	0					20	8	4	0	0	0	0.49216	1	13021	13021		60.972	7.6205	1	524050	+		28695	14405	19451	19522	29074	29074					0.010320166119640817
NTLADERVL	9	Unmodified	_NTLADERVL_					0	0	0		tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1	tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1	tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7801513671875	2	515.780013	1029.54547	-0.5065	-0.00026124	0.13438	6.931E-05	-0.37212	-0.00019193	515.7798837203927	26.37	0.40862	26.37	26.101	26.509	0					13	8	2	0	0	0	0.33044	1	9407	9407		47.657	2.6351	1	302640			28696	22919	19452	19523	29075	29075					0.03188251092274186
NTLCNYTL	8	Unmodified	_NTLCNYTL_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2247009277344	2	471.223485	940.432418	0.17705	8.3431E-05	2.1614	0.0010185	2.3385	0.0011019	471.2245831114934	24.661	0.30127	24.661	24.573	24.874	0					19	7	4	0	0	0	0.61938	1	8340	8340		45.952	5.3793	1	612100	+		28697	14764	19453	19524	29076	29076					-0.04018140625260003
NTLINGFTF	9	Unmodified	_NTLINGFTF_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7662963867188	2	513.766374	1025.5182	3.1802	0.0016339	-3.334	-0.0017129	-0.15373	-7.8981E-05	513.7646200869235	45.056	0.19702	45.056	44.958	45.155	0					10	8	2	0	0	0	0.37744	1	18056	18056		36.447	0	1	41429	+		28698	14948	19454	19525	29077	29077					0.0064576755189591495
NTLMRQMIQ	9	Oxidation (M)	_NTLMRQM(Oxidation (M))IQ_		NTLMRQM(1)IQ		NTLM(-54)RQM(54)IQ	0	0	1			REV__TMEFF2|p.I184Tfs*72|1|0.06|ENSG00000144339|chr2:191999194-191999195|-/GG|frameshift_variant	REV__TMEFF2|p.I184Tfs*72|1|0.06|ENSG00000144339|chr2:191999194-191999195|-/GG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.7909545898438	2	575.789001	1149.56345	1.8437	0.0010616	0.78011	0.00044918	2.6239	0.0015108	575.7894428514712	21.466	0.7653	21.466	21.256	22.021	0					42	15	6	0	0	0	0.037569	1	7087	7087		101.6	24.754	2	28464000	+		28699	21648	19455	19526	29078	29078		785			-0.005350732488750509
NTLMRQMIQ	9	Oxidation (M)	_NTLMRQM(Oxidation (M))IQ_		NTLMRQM(1)IQ		NTLM(-61)RQM(61)IQ	0	0	1			REV__TMEFF2|p.I184Tfs*72|1|0.06|ENSG00000144339|chr2:191999194-191999195|-/GG|frameshift_variant	REV__TMEFF2|p.I184Tfs*72|1|0.06|ENSG00000144339|chr2:191999194-191999195|-/GG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.7907104492188	2	575.789001	1149.56345	3.3097	0.0019057	-0.59389	-0.00034196	2.7158	0.0015637	575.7886896652359	21.463	0.66623	21.463	21.304	21.97	0					37	13	6	0	0	0	0.055856	1	6976	6976		93.195	15.878	2	24463000	+		28700	21648	19455	19526	29079	29079		785			-0.005350732488750509
NTLNIDKLK	9	Unmodified	_NTLNIDKLK_					0	0	0		nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8148803710938	2	529.813856	1057.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.193	1	15.193	14.693	15.693	0								0	0	0	0.35737	1	3356	3356		23.523	0	1				28701	4332	19456	19527	29080	29080					0.0866570102307378
NTMNITISK	9	Unmodified	_NTMNITISK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2710876464844	2	511.270967	1020.52738	1.1193	0.00057226	-0.7851	-0.0004014	0.3342	0.00017087	511.27051167300266	29.423	0.22143	29.423	29.339	29.561	0					12	7	2	0	0	0	0.011893	1	9278	9278		136.99	14.813	1	554310			28702	3575	19457	19528	29081	29081					0.01793792845921871
NTMNITISK	9	Unmodified	_NTMNITISK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2709045410156	2	511.270967	1020.52738	1.0022	0.00051239	-0.91753	-0.00046911	0.084652	4.328E-05	511.2704526985276	29.698	0.29634	29.698	29.57	29.867	0					13	7	2	0	0	0	0.0046931	1	10624	10624		159.34	31.874	1	3580200			28703	3575	19457	19528	29082	29082					0.01793792845921871
NTMNITISK	9	Unmodified	_NTMNITISK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2707214355469	2	511.270967	1020.52738	0.41291	0.00021111	-0.68686	-0.00035117	-0.27395	-0.00014006	511.27074950409167	29.68	0.3671	29.68	29.565	29.933	0					20	7	5	0	0	0	0.0046931	1	11003	11003		159.34	14.18	1	1770600			28704	3575	19457	19528	29083	29083					0.01793792845921871
NTMNITISK	9	Unmodified	_NTMNITISK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2710876464844	2	511.270967	1020.52738	0.8527	0.00043596	-1.3092	-0.00066934	-0.45646	-0.00023337	511.27056393232976	29.482	0.21393	29.482	29.39	29.604	0					14	5	4	0	0	0	0.021035	1	9911	9911		120.27	4.7785	1	391100			28705	3575	19457	19528	29084	29084					0.01793792845921871
NTMNITISK	9	Unmodified	_NTMNITISK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.27166748046875	2	511.270967	1020.52738	0.023924	1.2232E-05	0.18055	9.2308E-05	0.20447	0.00010454	511.2712285200039	29.656	0.36351	29.656	29.498	29.862	0					28	7	5	0	0	0	0.001287	1	10876	10876		180.09	31.104	1	3554600			28706	3575	19457	19528	29085	29085					0.01793792845921871
NTMNITISK	9	Unmodified	_NTMNITISK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2709655761719	2	511.270967	1020.52738	1.3955	0.00071347	-1.5675	-0.00080143	-0.17205	-8.7964E-05	511.27030355682876	29.64	0.21579	29.64	29.532	29.748	0					11	4	3	0	0	0	0.029172	1	10893	10893		109.83	8.229	1	1722200			28707	3575	19457	19528	29086	29086					0.01793792845921871
NTMNQFVNK	9	Unmodified	_NTMNQFVNK_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7678833007812	2	548.266216	1094.51788	1.2447	0.0006824	-0.72365	-0.00039675	0.521	0.00028565	548.2659261068118	26.716	0.2071	26.716	26.612	26.819	0					17	7	3	0	0	0	0.037924	1	8137	8137		101.25	37.946	1	265830			28708	6061	19458	19529	29087	29087					-0.025599754396125718
NTMNQFVNK	9	Unmodified	_NTMNQFVNK_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2666015625	2	548.266216	1094.51788	0.48643	0.0002667	-0.11609	-6.3649E-05	0.37034	0.00020305	548.2663168141194	26.946	0.2917	26.946	26.835	27.127	0					16	7	3	0	0	0	0.0049871	1	9352	9352		158.07	80.757	1	1242700			28709	6061	19458	19529	29088	29088					-0.025599754396125718
NTMNQFVNK	9	Unmodified	_NTMNQFVNK_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.266845703125	2	548.266216	1094.51788	0.40226	0.00022054	0.28518	0.00015636	0.68744	0.0003769	548.2664656403781	26.709	0.21484	26.709	26.629	26.844	0					18	8	3	0	0	0	0.0080613	1	8425	8425		145.16	73.86	1	525100			28710	6061	19458	19529	29089	29089					-0.025599754396125718
NTMNQFVNK	9	Unmodified	_NTMNQFVNK_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2666625976562	2	548.266216	1094.51788	1.7828	0.00097744	-1.4621	-0.00080165	0.32064	0.0001758	548.2654597528945	26.969	0.30715	26.969	26.811	27.118	0					23	6	5	0	0	0	0.003936	1	9703	9703		163.15	75.454	1	3074300			28711	6061	19458	19529	29090	29090					-0.025599754396125718
NTMNQFVNK	9	Unmodified	_NTMNQFVNK_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2662963867188	2	548.266216	1094.51788	1.1556	0.00063359	-0.99851	-0.00054745	0.15711	8.6139E-05	548.2655425934239	26.78	0.1913	26.78	26.687	26.878	0					8	4	2	0	0	0	0.063171	1	8662	8662		90.601	15.558	1	235790			28712	6061	19458	19529	29091	29091					-0.025599754396125718
NTMNQFVNK	9	Unmodified	_NTMNQFVNK_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2664794921875	2	548.266216	1094.51788	-1.5075	-0.00082652	1.8602	0.0010199	0.35265	0.00019334	548.267286537134	26.772	0.23369	26.772	26.67	26.903	0					12	5	3	0	0	0	0.020674	1	8657	8657		120.87	43.551	1	612720			28713	6061	19458	19529	29092	29092					-0.025599754396125718
NTMNQFVNK	9	Unmodified	_NTMNQFVNK_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2664184570312	2	548.266216	1094.51788	1.8645	0.0010222	-1.3855	-0.00075963	0.47898	0.00026261	548.2654860839104	26.893	0.31507	26.893	26.788	27.103	0					18	6	4	0	0	0	0.00026591	1	9571	9571		190.26	97.066	1	1294100			28714	6061	19458	19529	29093	29093					-0.025599754396125718
NTMQQFLQK	9	Unmodified	_NTMQQFLQK_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.2896118164062	2	569.289691	1136.56483	1.1426	0.00065045	-1.4648	-0.00083389	-0.32223	-0.00018344	569.2890149983397	34.654	0.16492	34.654	34.58	34.745	0					17	7	3	0	0	0	0.087861	1	11325	11325		82.241	25.519	1	231520			28715	1478	19459	19530	29094	29094					0.0020088411154119967
NTMQQFLQK	9	Unmodified	_NTMQQFLQK_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.2899780273438	2	569.289691	1136.56483	0.08204	4.6704E-05	0.4391	0.00024998	0.52114	0.00029668	569.2901325358961	34.912	0.31506	34.912	34.8	35.115	0					23	8	4	0	0	0	1.5172E-08	1	13034	13034		219.56	79.594	1	1247400			28716	1478	19459	19530	29095	29095					0.0020088411154119967
NTMQQFLQK	9	Unmodified	_NTMQQFLQK_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.2892456054688	2	569.289691	1136.56483	0.10599	6.0337E-05	-0.16787	-9.5565E-05	-0.061881	-3.5228E-05	569.2896839218674	34.729	0.26444	34.729	34.635	34.899	0					24	12	3	0	0	0	0.19952	1	11708	11708		61.691	12.155	1	284460			28717	1478	19459	19530	29096	29096					0.0020088411154119967
NTMQQFLQK	9	Unmodified	_NTMQQFLQK_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.2892456054688	2	569.289691	1136.56483	-1.3232	-0.00075328	1.4682	0.00083583	0.14501	8.2551E-05	569.2907186587473	34.696	0.25129	34.696	34.595	34.846	0					19	8	3	0	0	0	0.02953	1	12288	12288		109.48	45.944	1	246950			28718	1478	19459	19530	29097	29097					0.0020088411154119967
NTMTLGDIVFK	11	Oxidation (M)	_NTM(Oxidation (M))TLGDIVFK_		NTM(1)TLGDIVFK		NTM(100)TLGDIVFK	0	0	1		ENSG00000163586|ENST00000295834|FABP1;nc|ENSG00000170325|Q9NQV6-6|PRDM10	ENSG00000163586|ENST00000295834|FABP1;nc|ENSG00000170325|Q9NQV6-6|PRDM10	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	627.8234252929688	2	627.823563	1253.63257	0.16035	0.00010067	-0.86257	-0.00054154	-0.70222	-0.00044087	627.8232420098929	43.38	0.23766	43.38	43.238	43.475	0					18	9	4	0	0	0	0.056425	1	17343	17343		102.06	35.1	1	81171			28719	5581;11642	19460	19531	29098	29098		226			0.015902892516805878
NTMTLGDIVFK	11	Oxidation (M)	_NTM(Oxidation (M))TLGDIVFK_		NTM(1)TLGDIVFK		NTM(44)TLGDIVFK	0	0	1		ENSG00000163586|ENST00000295834|FABP1;nc|ENSG00000170325|Q9NQV6-6|PRDM10	ENSG00000163586|ENST00000295834|FABP1;nc|ENSG00000170325|Q9NQV6-6|PRDM10	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	627.8234252929688	2	627.823563	1253.63257	3.1621	0.0019852	-2.4718	-0.0015518	0.69031	0.00043339	627.8218286483988	43.344	0.28996	43.344	43.231	43.521	0					16	11	2	0	0	0	0.50799	1	17329	17329		43.651	9.7292	1	100760			28720	5581;11642	19460	19531	29099	29099		226			0.015902892516805878
NTMTLGDIVFK	11	Unmodified	_NTMTLGDIVFK_					0	0	0		ENSG00000163586|ENST00000295834|FABP1;nc|ENSG00000170325|Q9NQV6-6|PRDM10	ENSG00000163586|ENST00000295834|FABP1;nc|ENSG00000170325|Q9NQV6-6|PRDM10	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.8267822265625	2	619.826106	1237.63766	3.0856	0.0019126	-2.9204	-0.0018101	0.16528	0.00010244	619.8248702478963	49.111	0.089016	49.111	49.072	49.161	0					7	5	2	0	0	0	0.4771	1	19460	19460		45.908	10.756	1	57844			28721	5581;11642	19460	19532	29100	29100					0.028345931142894187
NTNEVVIRY	9	Unmodified	_NTNEVVIRY_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;TDRD7|p.N797Sfs*58|1|0.03|ENSG00000196116|chr9:97480915-97480916|-/GTAATGTTAAT|frameshift_variant	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2919311523438	2	554.293288	1106.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.017	1	33.017	32.517	33.517	0								0	0	0	0.2591	1	10711	10711		42.396	6.7778	1				28722	7324	19461	19533	29101	29101					0.0229993998361806
NTNIPIGNK	9	Unmodified	_NTNIPIGNK_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.N788Yfs*3|1|0.09|ENSG00000115464|chr2:61343952-61343953|TT/-|frameshift_variant;USP34|p.N788Kfs*4|1|0.42|ENSG00000115464|chr2:61343951-61343952|-/T|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.76953125	2	485.769448	969.524344	-0.021258	-1.0326E-05	0.13274	6.448E-05	0.11148	5.4154E-05	485.76951052709285	23.816	0.15659	23.816	23.723	23.88	0					10	6	2	0	0	0	0.078509	1	6936	6936		85.161	23.053	1	87137			28723	2911	19462	19534	29102	29102					0.03836285783438598
NTNIPIGNK	9	Unmodified	_NTNIPIGNK_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.N788Yfs*3|1|0.09|ENSG00000115464|chr2:61343952-61343953|TT/-|frameshift_variant;USP34|p.N788Kfs*4|1|0.42|ENSG00000115464|chr2:61343951-61343952|-/T|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.76922607421875	2	485.769448	969.524344	0.67241	0.00032664	-1.2946	-0.00062888	-0.62221	-0.00030225	485.7687934114082	24.135	0.27089	24.135	24.006	24.277	0					14	6	3	0	0	0	0.078509	1	8077	8077		85.161	23.47	1	743040			28724	2911	19462	19534	29103	29103					0.03836285783438598
NTNIPIGNK	9	Unmodified	_NTNIPIGNK_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.N788Yfs*3|1|0.09|ENSG00000115464|chr2:61343952-61343953|TT/-|frameshift_variant;USP34|p.N788Kfs*4|1|0.42|ENSG00000115464|chr2:61343951-61343952|-/T|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7691345214844	2	485.769448	969.524344	-0.24617	-0.00011958	1.8417	0.00089464	1.5955	0.00077506	485.7694066248882	23.851	0.17528	23.851	23.794	23.969	0					6	4	2	0	0	0	0.30951	1	7358	7358		49.442	3.4693	1	152250			28725	2911	19462	19534	29104	29104					0.03836285783438598
NTNIPIGNK	9	Unmodified	_NTNIPIGNK_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.N788Yfs*3|1|0.09|ENSG00000115464|chr2:61343952-61343953|TT/-|frameshift_variant;USP34|p.N788Kfs*4|1|0.42|ENSG00000115464|chr2:61343951-61343952|-/T|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7692565917969	2	485.769448	969.524344	0.83683	0.00040651	0.93053	0.00045202	1.7674	0.00085853	485.7687019223259	24.02	0.21624	24.02	23.914	24.13	0					10	4	3	0	0	0	0.21263	1	8238	8238		60.118	8.7828	1	1041200			28726	2911	19462	19534	29105	29105					0.03836285783438598
NTPPSLPTV	9	Unmodified	_NTPPSLPTV_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.25347900390625	2	463.2531	924.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.478	1	38.478	37.978	38.978	0								0	0	0	0.29356	1	14624	14624		36.447	2.2742	1		+		28727	14109	19463	19535	29106	29106					0.02638078660561405
NTPSGTNAL	9	Unmodified	_NTPSGTNAL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.71661376953125	2	437.716882	873.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.413	1	26.413	25.913	26.913	0								0	0	0	0.018912	1	9107	9107		101.25	10.476	1				28728	4866	19464	19536	29107	29107					-0.02256255412999053
NTQDVLIFK	9	Unmodified	_NTQDVLIFK_					0	0	0		ENSG00000156958|ENST00000560031|GALK2;nc|ENSG00000156958|Q01415-2|GALK2	ENSG00000156958|ENST00000560031|GALK2	ENSG00000156958|ENST00000560031|GALK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.3026123046875	2	539.300581	1076.58661	1.5458	0.00083363	0.83667	0.00045122	2.3824	0.0012848	539.3011033582056	39.533	0.22831	39.533	39.421	39.65	0					23	13	2	0	0	0	0.25761	1	12818	12818		54.722	10.345	1	86403			28729	5190	19465	19537	29108	29108					0.05138012131783398
NTQDVLIFK	9	Unmodified	_NTQDVLIFK_					0	0	0		ENSG00000156958|ENST00000560031|GALK2;nc|ENSG00000156958|Q01415-2|GALK2	ENSG00000156958|ENST00000560031|GALK2	ENSG00000156958|ENST00000560031|GALK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.803955078125	2	539.300581	1076.58661	1.9871	0.0010717	-0.70569	-0.00038058	1.2814	0.00069108	539.3001938267897	39.827	0.37116	39.827	39.744	40.115	0					31	13	4	0	0	0	0.035106	1	15156	15156		104.01	21.263	1	658070			28730	5190	19465	19537	29109	29109					0.05138012131783398
NTQDVLIFK	9	Unmodified	_NTQDVLIFK_					0	0	0		ENSG00000156958|ENST00000560031|GALK2;nc|ENSG00000156958|Q01415-2|GALK2	ENSG00000156958|ENST00000560031|GALK2	ENSG00000156958|ENST00000560031|GALK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.301513671875	2	539.300581	1076.58661	4.928	0.0026577	-2.2511	-0.001214	2.6769	0.0014437	539.299260705337	39.601	0.19608	39.601	39.513	39.709	0					19	10	3	0	0	0	0.21419	1	13296	13296		59.931	17.067	1	129080			28731	5190	19465	19537	29110	29110					0.05138012131783398
NTQDVLIFK	9	Unmodified	_NTQDVLIFK_					0	0	0		ENSG00000156958|ENST00000560031|GALK2;nc|ENSG00000156958|Q01415-2|GALK2	ENSG00000156958|ENST00000560031|GALK2	ENSG00000156958|ENST00000560031|GALK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.30126953125	2	539.300581	1076.58661	1.4274	0.00076982	0.10922	5.8902E-05	1.5367	0.00082872	539.3006862457885	39.815	0.41978	39.815	39.679	40.099	0					28	14	3	0	0	0	0.0088974	1	15650	15650		143.37	33.895	1	506470			28732	5190	19465	19537	29111	29111					0.05138012131783398
NTQDVLIFK	9	Unmodified	_NTQDVLIFK_					0	0	0		ENSG00000156958|ENST00000560031|GALK2;nc|ENSG00000156958|Q01415-2|GALK2	ENSG00000156958|ENST00000560031|GALK2	ENSG00000156958|ENST00000560031|GALK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.3011474609375	2	539.300581	1076.58661	2.1803	0.0011758	0.37051	0.00019982	2.5508	0.0013756	539.3004103531314	39.564	0.22587	39.564	39.496	39.722	0					22	11	3	0	0	0	0.0080613	1	14091	14091		145.16	29.662	1	124800			28733	5190	19465	19537	29112	29112					0.05138012131783398
NTQDVLIFK	9	Unmodified	_NTQDVLIFK_					0	0	0		ENSG00000156958|ENST00000560031|GALK2;nc|ENSG00000156958|Q01415-2|GALK2	ENSG00000156958|ENST00000560031|GALK2	ENSG00000156958|ENST00000560031|GALK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3007202148438	2	539.300581	1076.58661	0.68406	0.00036892	0.33679	0.00018163	1.0209	0.00055055	539.3007783027615	39.76	0.46466	39.76	39.656	40.121	0					26	10	4	0	0	0	0.0030642	1	15722	15722		168.26	35.501	1	1168000			28734	5190	19465	19537	29113	29113					0.05138012131783398
NTSDFQKLK	9	Unmodified	_NTSDFQKLK_					0	0	0		nc|ENSG00000204673|Q96B36-2|AKT1S1;ENSG00000204673|ENST00000344175|AKT1S1;nc|ENSG00000204673|Q96B36-3|AKT1S1	nc|ENSG00000204673|Q96B36-2|AKT1S1	nc|ENSG00000204673|Q96B36-2|AKT1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.8614196777344	3	360.860984	1079.56112	0.45324	0.00016356	1.0015	0.00036141	1.4548	0.00052497	360.8614003488542	20.882	0.1687	20.882	20.832	21	0					9	5	2	0	0	0	0.53083	1	5689	5689		22.58	0	1	76826			28735	7719	19466	19538	29114	29114					0.024525376093151863
NTSDFVYLK	9	Unmodified	_NTSDFVYLK_					0	0	0		ENST00000471733.5_1_3:196807912-197024075:-|nuORF;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7772827148438	2	543.776939	1085.53933	1.8778	0.0010211	-1.207	-0.00065633	0.67076	0.00036474	543.7762105500369	37.183	0.23303	37.183	37.069	37.302	0					10	6	2	0	0	0	0.33044	1	14092	14092		47.657	8.4045	1	145330			28736	1547	19467	19539	29115	29115					-2.2671392343909247E-05
NTSDFVYLK	9	Unmodified	_NTSDFVYLK_					0	0	0		ENST00000471733.5_1_3:196807912-197024075:-|nuORF;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7780151367188	2	543.776939	1085.53933	0.60127	0.00032696	0.86241	0.00046896	1.4637	0.00079591	543.7774735709899	37.077	0.25829	37.077	36.977	37.235	0					7	5	2	0	0	0	0.13726	1	14478	14478		70.816	16.04	1	107970			28737	1547	19467	19539	29116	29116					-2.2671392343909247E-05
NTSLFVLGK	9	Unmodified	_NTSLFVLGK_					0	0	0		ENST00000563666.1_1_16:29810259-29810893:+|nuORF;KIF22|p.A402Qfs*34|1|0.14|ENSG00000079616|chr16:29799963-29799964|-/CAAAGAGA|frameshift_variant;KIF22|p.E491Nfs*36|1|0.17|ENSG00000079616|chr16:29803465-29803465|A/-|frameshift_variant;nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22	ENST00000563666.1_1_16:29810259-29810893:+|nuORF	ENST00000563666.1_1_16:29810259-29810893:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7838134765625	2	489.784567	977.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.354	1	38.354	37.854	38.854	0								0	0	0	0.28191	1	14569	14569		38.754	5.238	1				28738	1625	19468	19540	29117	29117					0.06490644448626881
NTSLVTALQ	9	Unmodified	_NTSLVTALQ_					0	0	0		FASTKD3|p.L285Yfs*3|1|0.19|ENSG00000124279|chr5:7867231-7867231|G/-|frameshift_variant;FASTKD3|p.P387Tfs*44|1|0.45|ENSG00000124279|chr5:7866925-7866926|-/T|frameshift_variant;ENSG00000124279|ENST00000264669|FASTKD3	FASTKD3|p.L285Yfs*3|1|0.19|ENSG00000124279|chr5:7867231-7867231|G/-|frameshift_variant	FASTKD3|p.L285Yfs*3|1|0.19|ENSG00000124279|chr5:7867231-7867231|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.763671875	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.635	1	17.635	17.135	18.135	0								0	0	0	0.29356	1	5272	5272		36.447	0	1				28739	3364	19469	19541	29118	29118					0.03817463689279066
NTTKFVGPA	9	Unmodified	_NTTKFVGPA_					0	0	0		ENST00000381482.7_1_20:2126675-2127125:+|nuORF	ENST00000381482.7_1_20:2126675-2127125:+|nuORF	ENST00000381482.7_1_20:2126675-2127125:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7530822753906	2	467.753267	933.491981	0.3439	0.00016086	0.20033	9.3707E-05	0.54423	0.00025457	467.7530535512909	35.523	0.19712	35.523	35.416	35.613	0					7	5	2	0	0	0	0.35045	1	13327	13327		45.952	0	1	134400			28740	9115	19470	19542	29119	29119					0.022574983804247495
NTTNDIAHIQ	10	Unmodified	_NTTNDIAHIQ_					0	0	0		ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X	ENSG00000146938|ENST00000381095|NLGN4X	ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7779541015625	2	563.778002	1125.54145	0.40735	0.00022966	-1.1979	-0.00067536	-0.79057	-0.0004457	563.7775309198138	15.609	0.17652	15.609	15.52	15.697	0					7	4	2	0	0	0	0.58189	1	4080	4080		36.447	2.2742	1	275180			28741	4756	19471	19543	29120	29120					-0.016298384014362455
NTTSAVTVK	9	Unmodified	_NTTSAVTVK_					0	0	0		ENST00000496450.1_1_11:27505577-27505652:+|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.75640869140625	2	460.756007	919.497461	0.12231	5.6356E-05	0.74344	0.00034254	0.86575	0.0003989	460.75630993763843	18.663	0.13994	18.663	18.571	18.711	0					5	3	2	0	0	0	0.037712	1	5490	5490		101.46	32.614	1	137100			28742	7495	19472	19544	29121	29121					0.0344917717224007
NTTVVDTFP	9	Unmodified	_NTTVVDTFP_					0	0	0			REV__ENST00000563131.2_1_15:89744727-89744991:-|nuORF	REV__ENST00000563131.2_1_15:89744727-89744991:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.24981689453125	2	497.248015	992.481476	2.9006	0.0014423	0.8831	0.00043912	3.7837	0.0018815	497.24851287021136	11.906	0.57072	11.906	11.778	12.349	0					24	17	2	0	0	0	0.47038	1	2377	2377		35.618	5.1146	1	2090100	+		28743	13607	19473	19545	29122	29122					-0.015065290646589347
NTVKEELI	8	Unmodified	_NTVKEELI_					0	0	0			REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2664794921875	2	473.266207	944.517862	-2.5154	-0.0011905	1.9928	0.00094314	-0.52256	-0.00024731	473.2671921821906	36.827	0.21136	36.827	36.763	36.974	0					18	9	3	0	0	0	0.63077	1	13176	13176		44.117	0	1	145580	+		28744	21845	19474	19546	29123	29123					0.04338347832049294
NTVQLPPLS	9	Unmodified	_NTVQLPPLS_					0	0	0			REV__ENST00000595984.5_1_19:19010490-19010792:-|nuORF	REV__ENST00000595984.5_1_19:19010490-19010792:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.77398681640625	2	484.7742	967.533846	-0.22484	-0.000109	0.108	5.2355E-05	-0.11684	-5.664E-05	484.774123874874	40.077	0.32666	40.077	39.98	40.307	0					29	13	5	0	0	0	0.36892	1	15287	15287		44.377	3.599	1	543880	+		28745	20562	19475	19547	29124	29124					0.048780540689676855
NTVRQHLRA	9	Unmodified	_NTVRQHLRA_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.54498291015625	3	365.544101	1093.61047	3.1521	0.0011522	-0.42429	-0.0001551	2.7278	0.00099714	365.54389035247385	24.304	0.36533	24.304	24.147	24.513	0					17	7	4	0	0	0	0.47038	1	8377	8377		35.152	35.152	1	1896500	+		28746	15715	19476	19548	29125	29125					0.06741290408785972
NTVSDRVLF	9	Unmodified	_NTVSDRVLF_					0	0	0			REV__ENSG00000129946|ENST00000264554|SHC2	REV__ENSG00000129946|ENST00000264554|SHC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7843017578125	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.451	1	44.451	43.951	44.951	0								0	0	0	0.27939	1	17808	17808		39.253	8.7492	1		+		28747	14561	19477	19549	29126	29126					0.027765549549030766
NTVTFSRSW	9	Unmodified	_NTVTFSRSW_					0	0	0			REV__ENST00000430308.1_1_13:22105077-22105125:+|nuORF	REV__ENST00000430308.1_1_13:22105077-22105125:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2723999023438	2	549.272355	1096.53016	1.2624	0.00069343	-0.79213	-0.00043509	0.47032	0.00025834	549.2717017757774	36.154	0.30371	36.154	36.055	36.359	0					30	15	3	0	0	0	0.30841	1	11878	11878		49.536	3.5638	1	305490	+		28748	19156	19478	19550	29127	29127					-0.01424615704900134
NTYKGKSL	8	Unmodified	_NTYKGKSL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;PRRC2C|p.E156Kfs*66|2|0.25|ENSG00000117523|chr1:171515797-171515797|A/-|frameshift_variant;PRRC2C|p.K551Nfs*17|1|0.23|ENSG00000117523|chr1:171532743-171532743|A/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.75372314453125	2	455.753267	909.491981	-0.13815	-6.2961E-05	-0.75273	-0.00034306	-0.89088	-0.00040602	455.7530133825409	16.638	0.20568	16.638	16.58	16.785	0					6	4	2	0	0	0	0.70598	1	4834	4834		32.812	0	1	282210			28749	3044	19479	19551	29128	29128					0.03361498380422745
NTYPFHTPV	9	Unmodified	_NTYPFHTPV_					0	0	0		TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-1|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-25|TAF1	TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant	TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7988891601562	2	538.263999	1074.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.421	1	14.421	13.921	14.921	0								0	0	0	0.35899	1	3736	3736		23.042	0.46283	1				28750	4767	19480	19552	29129	29129					-0.020831165908703042
NTYVALYKF	9	Unmodified	_NTYVALYKF_					0	0	0		ENST00000473452.1_1_3:36527678-36547327:+|nuORF;ENSG00000144681|ENST00000273183|STAC	ENST00000473452.1_1_3:36527678-36547327:+|nuORF	ENST00000473452.1_1_3:36527678-36547327:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.7974243164062	2	559.797675	1117.5808	0.12374	6.9269E-05	0.76893	0.00043044	0.89267	0.00049971	559.7979862119957	30.115	0.37854	30.115	30.014	30.393	0					18	13	2	0	0	0	0.40353	1	9889	9889		34.173	1.3601	1	207360			28751	4632	19481	19553	29130	29130					0.02670913620090687
NVAADIVGNLC	11	Unmodified	_NVAADIVGNLC_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.772216796875	2	544.773874	1087.53319	-1.4957	-0.00081481	-0.88996	-0.00048483	-2.3856	-0.0012996	544.7733924335392	24.685	0.36524	24.685	24.495	24.86	0					25	8	4	0	0	0	0.3077	1	7721	7721		44.377	0	1	3047400	+		28752	14514	19482	19554	29131	29131					-0.00707108642404819
NVADLHEKY	9	Unmodified	_NVADLHEKY_					0	0	0		ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.5171203613281	3	363.517218	1087.52982	0.10068	3.66E-05	-0.303	-0.00011014	-0.20231	-7.3544E-05	363.5170990434286	24.576	0.29799	24.576	24.497	24.795	0					21	8	4	0	0	0	0.5741	1	7260	7260		31.634	4.8846	1	1602400			28753	2064	19483	19555	29132	29132					-0.0104403542475211
NVADLHEKY	9	Unmodified	_NVADLHEKY_					0	0	0		ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.7725830078125	2	544.772188	1087.52982	1.1777	0.0006416	-0.35003	-0.00019069	0.82772	0.00045092	544.7720642318596	24.572	0.33283	24.572	24.424	24.757	0					14	9	2	0	0	0	0.022698	1	7277	7277		117.53	46.23	1	826980			28754	2064	19483	19555	29133	29133					-0.0104403542475211
NVADLHEKY	9	Unmodified	_NVADLHEKY_					0	0	0		ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.7725219726562	2	544.772188	1087.52982	0.38129	0.00020772	0.54136	0.00029492	0.92265	0.00050263	544.7726323910198	24.855	0.72847	24.855	24.687	25.415	0					36	17	4	0	0	0	0.010427	2	8410	8393;8410		140.11	74.647	1	5010200			28755	2064	19483	19555	29134;29135	29135					-0.0104403542475211
NVADLHEKY	9	Unmodified	_NVADLHEKY_					0	0	0		ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.5171203613281	3	363.517218	1087.52982	0.47773	0.00017366	-0.63001	-0.00022902	-0.15228	-5.5356E-05	363.5170196446813	24.861	0.9382	24.861	24.726	25.664	0					53	22	5	0	0	0	0.27249	1	8409	8409		68.846	19.405	1	19271000			28756	2064	19483	19555	29136	29136					-0.0104403542475211
NVADLHEKY	9	Unmodified	_NVADLHEKY_					0	0	0		ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.772705078125	2	544.772188	1087.52982	0.49562	0.00027	0.45631	0.00024858	0.95193	0.00051858	544.772428236063	24.599	0.31252	24.599	24.498	24.811	0					32	11	4	0	0	0	0.013298	1	7537	7537		133.99	63.177	1	2725400			28757	2064	19483	19555	29137	29137					-0.0104403542475211
NVADLHEKY	9	Unmodified	_NVADLHEKY_					0	0	0		ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7722778320312	2	544.772188	1087.52982	1.9474	0.0010609	-1.5201	-0.00082811	0.42728	0.00023277	544.7712207647791	24.849	1.0095	24.849	24.694	25.704	0					44	20	4	0	0	0	0.0079272	1	8732	8732		145.46	75.833	1	16248000			28758	2064	19483	19555	29138	29138					-0.0104403542475211
NVADVVIKF	9	Unmodified	_NVADVVIKF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7928771972656	2	502.792392	1003.57023	0.44811	0.00022531	0.24336	0.00012236	0.69147	0.00034767	502.7923478300369	46.499	0.088898	46.499	46.429	46.518	0					9	5	2	0	0	0	0.36892	1	14327	14327		44.377	0	1	42683			28759	3083	19484	19556	29139	29139					0.06858930965665877
NVADVVIKF	9	Unmodified	_NVADVVIKF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7931823730469	2	502.792392	1003.57023	0.72366	0.00036385	0.054054	2.7178E-05	0.77771	0.00039103	502.79243750746826	46.726	0.18631	46.726	46.673	46.859	0					19	11	2	0	0	0	0.28897	1	17218	17218		51.193	0	1	109490			28760	3083	19484	19556	29140	29140					0.06858930965665877
NVADVVIKF	9	Unmodified	_NVADVVIKF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7928161621094	2	502.792392	1003.57023	0.99107	0.0004983	-0.16531	-8.3115E-05	0.82576	0.00041519	502.79214009103424	46.729	0.24902	46.729	46.614	46.863	0					41	14	4	0	0	0	0.15163	1	17911	17911		67.494	9.2637	1	392010			28761	3083	19484	19556	29141	29141					0.06858930965665877
NVADVVIKF	9	Unmodified	_NVADVVIKF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2929382324219	2	502.792392	1003.57023	-0.48617	-0.00024444	1.2299	0.00061838	0.74371	0.00037393	502.79302101729144	46.683	0.35506	46.683	46.578	46.933	0					29	16	3	0	0	0	0.15163	1	18655	18655		67.494	19.836	1	414740			28762	3083	19484	19556	29142	29142					0.06858930965665877
NVAEFVCKY	9	Unmodified	_NVAEFVCKY_					0	0	0		ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-3|TRIM13	ENSG00000204977|ENST00000378182|TRIM13	ENSG00000204977|ENST00000378182|TRIM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.76123046875	2	536.760235	1071.50592	1.9527	0.0010481	2.633	0.0014133	4.5857	0.0024614	536.76048190119	41.3	0.18484	41.3	41.186	41.371	0					8	4	3	0	0	0	0.46194	1	16420	16420		36.447	0	1	72910			28763	7731	19485	19557	29143	29143					-0.026975921827897764
NVAKLNGLL	9	Unmodified	_NVAKLNGLL_					0	0	0			REV__ENSG00000125124|ENST00000245157|BBS2	REV__ENSG00000125124|ENST00000245157|BBS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2924499511719	2	471.292559	940.570566	-1.3583	-0.00064016	0.93553	0.00044091	-0.42278	-0.00019925	471.2929655993376	17.17	0.081173	17.17	17.139	17.22	0					4	2	2	0	0	0	0.25109	1	4263	4263		55.504	0	1	160530	+		28764	14422	19486	19558	29144	29144					0.09790350685523208
NVAKTANKDHL	11	Unmodified	_NVAKTANKDHL_					0	0	0		FKBP3|p.K118Rfs*45|1|0.05|ENSG00000100442|chr14:45121586-45121586|T/-|frameshift_variant;ENSG00000100442|ENST00000396062|FKBP3	FKBP3|p.K118Rfs*45|1|0.05|ENSG00000100442|chr14:45121586-45121586|T/-|frameshift_variant	FKBP3|p.K118Rfs*45|1|0.05|ENSG00000100442|chr14:45121586-45121586|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	605.8305053710938	2	605.830569	1209.64658	-0.60439	-0.00036616	0.84574	0.00051238	0.24136	0.00014622	605.8310959971807	24.617	0.32848	24.617	24.435	24.763	0					29	11	3	0	0	0	0.63398	1	7515	7515		33.922	10.399	1	344700			28765	2031	19487	19559	29145	29145					0.050147027950060874
NVATKQCVPE	10	Unmodified	_NVATKQCVPE_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENSG00000260691|ENST00000562196|ANKRD20A1	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.7728271484375	2	544.773874	1087.53319	-1.4957	-0.00081481	-0.88996	-0.00048483	-2.3856	-0.0012996	544.7733924335392	24.685	0.36524	24.685	24.495	24.86	0					25	8	4	0	0	0	0.58308	1	7700	7700		24.519	0	1	3047400			28766	8043	19488	19560	29146	29146					-0.007071086424275563
NVATTLPSY	9	Unmodified	_NVATTLPSY_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2508239746094	2	483.250557	964.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.04	1	40.04	39.54	40.54	0								0	0	0	0.23445	1	15258	15258		45.972	7.1661	1				28767	3726	19489	19561	29147	29147					0.002897747979545784
NVATTLPSY	9	Unmodified	_NVATTLPSY_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.25	2	483.250557	964.486562	-0.59944	-0.00028968	-0.056617	-2.736E-05	-0.65606	-0.00031704	483.25070361763113	39.895	0.32852	39.895	39.752	40.08	0					15	7	3	0	0	0	0.1424	1	15788	15788		69.628	25.511	1	126390			28768	3726	19489	19561	29148	29148					0.002897747979545784
NVDKKQGI	8	Unmodified	_NVDKKQGI_					0	0	0		TRMT10A|p.K68Nfs*7|1|0.12|ENSG00000145331|chr4:99558193-99558193|T/-|frameshift_variant;ENST00000507394.1_1_4:100479199-100480495:-|nuORF;ENSG00000145331|ENST00000394876|TRMT10A	TRMT10A|p.K68Nfs*7|1|0.12|ENSG00000145331|chr4:99558193-99558193|T/-|frameshift_variant	TRMT10A|p.K68Nfs*7|1|0.12|ENSG00000145331|chr4:99558193-99558193|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.25830078125	2	451.258717	900.50288	0.70286	0.00031717	-2.2261	-0.0010046	-1.5233	-0.00068739	451.256958652596	34.732	0.22437	34.732	34.615	34.84	0					13	6	3	0	0	0	0.51384	1	13419	13419		58.782	5.4305	1	425460			28769	4665	19490	19562	29149	29149					0.048649007547169276
NVFKNKWI	8	Unmodified	_NVFKNKWI_					0	0	0		ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.8027954101562	2	524.800552	1047.58655	1.1538	0.0006055	3.4982	0.0018358	4.6519	0.0024413	524.8024021827108	12.754	0.047749	12.754	12.732	12.78	0					4	2	2	0	0	0	0.72381	1	2497	2497		20.482	1.1219	1	37830			28770	9473	19491	19563	29150	29150					0.06466056922408825
NVGCDMAL	8	Carbamidomethyl (C)	_NVGC(Carbamidomethyl (C))DMAL_	NVGC(1)DMAL		NVGC(63)DMAL		0	1	0			REV__FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	REV__FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.1883544921875	2	440.188588	878.362623	-0.56988	-0.00025085	-0.28302	-0.00012458	-0.8529	-0.00037544	440.1886825548076	25.779	0.56316	25.779	25.57	26.133	0					29	11	4	0	0	0	0.46905	1	8218	8218		63.306	20.832	1	566940	+		28771	16025	19492	19564	29151	29151	574				-0.08142342565531635
NVGCDMAL	8	Carbamidomethyl (C)	_NVGC(Carbamidomethyl (C))DMAL_	NVGC(1)DMAL		NVGC(44)DMAL		0	1	0			REV__FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	REV__FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.18878173828125	2	440.188588	878.362623	-3.0268	-0.0013324	2.134	0.00093935	-0.89285	-0.00039302	440.1899169065731	25.763	0.56041	25.763	25.561	26.121	0					21	11	3	0	0	0	0.63077	1	8190	8190		44.117	9.9443	1	219770	+		28772	16025	19492	19564	29152	29152	574				-0.08142342565531635
NVGCDMAL	8	Carbamidomethyl (C)	_NVGC(Carbamidomethyl (C))DMAL_	NVGC(1)DMAL		NVGC(53)DMAL		0	1	0			REV__FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	REV__FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.1883239746094	2	440.188588	878.362623	0.70425	0.00031	-1.9983	-0.00087962	-1.294	-0.00056961	440.1880580192182	25.941	0.85249	25.941	25.599	26.451	0					47	15	5	0	0	0	0.5676	1	9069	9069		53.351	14.545	1	4192900	+		28773	16025	19492	19564	29153	29153	574				-0.08142342565531635
NVIHNLATY	9	Unmodified	_NVIHNLATY_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7781372070312	2	522.777274	1043.53999	0.78859	0.00041226	-0.29767	-0.00015561	0.49092	0.00025664	522.7772071768363	35.212	0.19793	35.212	35.131	35.329	0					23	9	3	0	0	0	0.30951	1	11524	11524		49.442	13.823	1	239590			28774	3314	19493	19565	29154	29154					0.019965723004816027
NVIHNLATY	9	Unmodified	_NVIHNLATY_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.777587890625	2	522.777274	1043.53999	0.086534	4.5238E-05	0.41829	0.00021867	0.50482	0.00026391	522.777555003337	35.492	0.45635	35.492	35.334	35.79	0					31	12	4	0	0	0	0.0406	1	13299	13299		98.629	40.818	1	1670300			28775	3314	19493	19565	29155	29155					0.019965723004816027
NVIHNLATY	9	Unmodified	_NVIHNLATY_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7776489257812	2	522.777274	1043.53999	0.45114	0.00023585	0.64731	0.0003384	1.0985	0.00057425	522.7776028608444	35.289	0.23273	35.289	35.19	35.423	0					23	10	4	0	0	0	0.12239	1	11910	11910		74.255	5.4682	1	288880			28776	3314	19493	19565	29156	29156					0.019965723004816027
NVIHNLATY	9	Unmodified	_NVIHNLATY_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7779541015625	2	522.777274	1043.53999	-0.050611	-2.6458E-05	0.43691	0.00022841	0.3863	0.00020195	522.777701706392	35.485	0.2014	35.485	35.37	35.571	0					8	5	2	0	0	0	0.24095	1	13745	13745		56.721	0	1	209910			28777	3314	19493	19565	29157	29157					0.019965723004816027
NVIHNLATY	9	Unmodified	_NVIHNLATY_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.778076171875	2	522.777274	1043.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.277	1	35.277	34.777	35.777	0								0	0	0	0.2591	1	12558	12558		42.396	7.1954	1				28778	3314	19493	19565	29158	29158					0.019965723004816027
NVIHNLATY	9	Unmodified	_NVIHNLATY_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.77685546875	2	522.777274	1043.53999	1.6252	0.00084963	-0.94373	-0.00049336	0.68149	0.00035627	522.7764972271042	35.426	0.27258	35.426	35.313	35.586	0					16	5	4	0	0	0	0.055856	1	13663	13663		93.195	36.474	1	600070			28779	3314	19493	19565	29159	29159					0.019965723004816027
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.78271484375	2	525.782556	1049.55056	1.36	0.00071504	-0.97903	-0.00051476	0.38092	0.00020028	525.7818999358223	33.565	0.61797	33.565	33.46	34.078	0					73	24	5	0	0	0	0.04067	2	10908	10908;11053		98.582	39.189	1	17403000			28780	5259	19494	19566	29160;29161	29160					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.782958984375	2	525.782556	1049.55056	0.64509	0.00033918	-0.16683	-8.7715E-05	0.47826	0.00025146	525.7824080270879	33.56	0.52042	33.56	33.454	33.974	0					62	20	4	0	0	0	0.12834	1	10903	10903		72.879	26.907	1	8526100			28781	5259	19494	19566	29162	29162					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7828979492188	2	525.782556	1049.55056	1.955	0.0010279	-1.6852	-0.00088607	0.26977	0.00014184	525.7816856299203	33.787	0.80528	33.787	33.659	34.465	0					86	21	6	0	0	0	0.013878	2	12499	12499;12666		132.76	55.984	1	90793000			28782	5259	19494	19566	29163;29164	29163					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7828369140625	2	525.782556	1049.55056	0.098448	5.1762E-05	0.38723	0.0002036	0.48568	0.00025536	525.7827168085979	33.777	0.80919	33.777	33.486	34.295	0					69	21	4	0	0	0	0.035106	1	12508	12508		104.01	27.239	1	44780000			28783	5259	19494	19566	29165	29165					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7830200195312	2	525.782556	1049.55056	0.51043	0.00026837	-0.24539	-0.00012902	0.26504	0.00013935	525.7823232419299	33.633	1.1641	33.633	33.361	34.525	0					134	47	6	0	0	0	0.04067	2	11265	11265;11404		98.582	34.375	1	47966000			28784	5259	19494	19566	29166;29167	29166					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7831420898438	2	525.782556	1049.55056	0.52195	0.00027443	1.2076	0.00063492	1.7295	0.00090935	525.7831799500472	34.738	0.58624	34.738	34.544	35.131	0					42	26	2	0	0	0	0.35021	1	11799	11799		45.972	5.1941	1	73537			28785	5259	19494	19566	29168	29168					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7830810546875	2	525.782556	1049.55056	0.52173	0.00027432	-0.065592	-3.4487E-05	0.45614	0.00023983	525.7828289265387	35.289	0.33152	35.289	35.149	35.48	0					17	15	2	0	0	0	0.25761	1	11939	11939		54.722	13.944	1	67856			28786	5259	19494	19566	29169	29169					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7828369140625	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.638	1	33.638	33.138	34.138	0								0	0	0	0.31838	1	11303	11303		31.53	2.3803	1				28787	5259	19494	19566	29170	29170					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7828369140625	2	525.782556	1049.55056	1.7702	0.00093073	-1.5021	-0.00078979	0.26806	0.00014094	525.7820106714671	33.805	1.3253	33.805	33.479	34.805	0					112	33	6	0	0	0	0.035106	3	12934	12934;13122;13368		104.01	35.093	1	282660000			28788	5259	19494	19566	29171;29172;29173	29171					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7820434570312	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.473	1	41.473	40.973	41.973	0								0	0	0	0.26578	1	16305	16305		41.427	0.64845	1				28789	5259	19494	19566	29174	29174					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.782958984375	2	525.782556	1049.55056	1.1879	0.00062455	-0.90688	-0.00047682	0.28098	0.00014773	525.7820459950135	33.572	1.0883	33.572	33.414	34.503	0					98	32	6	0	0	0	0.02953	2	11790	11790;11954		109.48	35.223	1	36906000			28790	5259	19494	19566	29175;29176	29175					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7825927734375	2	525.782556	1049.55056	1.6274	0.00085566	-1.4843	-0.00078041	0.14312	7.5251E-05	525.781917392852	33.774	2.0017	33.774	33.533	35.535	0					117	41	5	0	0	0	0.02429	3	12841	12841;13017;13282		114.89	43.017	1	342650000			28791	5259	19494	19566	29177;29178;29179	29177					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7822265625	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.053	1	35.053	34.553	35.553	0								0	0	0	0.24544	1	13497	13497		44.377	0.26039	1				28792	5259	19494	19566	29180	29180					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7835083007812	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.125	1	40.125	39.625	40.625	0								0	0	0	0.19847	1	15909	15909		51.193	7.0759	1				28793	5259	19494	19566	29181	29181					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7822265625	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.231	1	45.231	44.731	45.731	0								0	0	0	0.18645	1	18116	18116		52.937	11.51	1				28794	5259	19494	19566	29182	29182					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7840576171875	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.171	1	46.171	45.671	46.671	0								0	0	0	0.27939	1	18481	18481		39.253	8.7492	1				28795	5259	19494	19566	29183	29183					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7832641601562	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.907	1	46.907	46.407	47.407	0								0	0	0	0.24544	1	18750	18750		44.377	3.8046	1				28796	5259	19494	19566	29184	29184					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7837524414062	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.29	1	48.29	47.79	48.79	0								0	0	0	0.22284	1	19203	19203		47.657	0	1				28797	5259	19494	19566	29185	29185					0.027765549549030766
NVIRDAVTY	9	Unmodified	_NVIRDAVTY_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.78271484375	2	525.782556	1049.55056	3.4522	0.0018151	-3.1179	-0.0016394	0.3343	0.00017577	525.7814428471103	33.759	2.3526	33.759	33.415	35.768	0					120	48	6	0	0	0	0.020674	2	12834	12834;13008		120.87	54.439	1	281290000			28798	5259	19494	19566	29186;29187	29186					0.027765549549030766
NVKGTQIGAY	10	Unmodified	_NVKGTQIGAY_					0	0	0		ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant;ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM	ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant	ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7805786132812	2	525.782556	1049.55056	1.7703	0.00093079	-0.83656	-0.00043985	0.93374	0.00049094	526.2836211962613	43.6	0.28278	43.6	43.48	43.763	0					22	15	2	0	0	0	0.58189	1	17050	17050		36.447	2.2742	1	49231			28799	6194	19495	19567	29188	29188					0.027765549549030766
NVKVKVLKQ	9	Unmodified	_NVKVKVLKQ_					0	0	0		SLC10A5|p.M211Ifs*49|1|0.1|ENSG00000253598|chr8:81694340-81694341|-/A|frameshift_variant;SLC10A5|p.A299Qfs*4|1|0.24|ENSG00000253598|chr8:81694079-81694079|T/-|frameshift_variant;ENSG00000253598|ENST00000518568|SLC10A5	SLC10A5|p.M211Ifs*49|1|0.1|ENSG00000253598|chr8:81694340-81694341|-/A|frameshift_variant	SLC10A5|p.M211Ifs*49|1|0.1|ENSG00000253598|chr8:81694340-81694341|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.56915283203125	3	352.569365	1054.68626	-0.049551	-1.747E-05	-0.21512	-7.5844E-05	-0.26467	-9.3314E-05	352.56928153618657	16.308	0.1165	16.308	16.251	16.367	0					4	2	2	0	0	0	0.45358	1	4500	4500		36.447	0	1	127150			28800	7999	19496	19568	29189	29189					0.16110874536366282
NVLDIMVTK	9	Unmodified	_NVLDIMVTK_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR3|p.G531Vfs*50|1|0.15|ENSG00000096433|chr6:33667164-33667164|G/-|frameshift_variant;ITPR3|p.K608Sfs*66|1|0.34|ENSG00000096433|chr6:33667898-33667898|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.79248046875	2	516.791535	1031.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.627	1	43.627	43.127	44.127	0								0	0	0	0.26578	1	16434	16434		41.427	0.85399	1				28801	1917	19497	19569	29190	29190					0.053995538853769176
NVLFENNIL	9	Unmodified	_NVLFENNIL_					0	0	0		tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.29541015625	2	538.292756	1074.57096	3.3833	0.0018212	0.61448	0.00033077	3.9978	0.002152	538.2931063803242	46.705	0.24246	46.705	46.606	46.849	0					28	11	4	0	0	0	0.22377	1	18677	18677		58.782	4.0056	1	324780			28802	22946	19498	19570	29191	29191					0.036657256147236694
NVLLRKSGG	9	Unmodified	_NVLLRKSGG_					0	0	0		ENST00000525729.5_2_11:108264081-108276170:-|nuORF	ENST00000525729.5_2_11:108264081-108276170:-|nuORF	ENST00000525729.5_2_11:108264081-108276170:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2874755859375	2	472.287808	942.561064	-0.61589	-0.00029088	0.30604	0.00014454	-0.30985	-0.00014634	472.28783046481414	53.922	0.27974	53.922	53.809	54.089	0					42	17	3	0	0	0	0.53083	1	18898	18898		29.15	0	1	522860			28803	10364	19499	19571	29192	29192					0.08748582400005489
NVLRGTGGAL	10	Unmodified	_NVLRGTGGAL_					0	0	0		ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151475|ENST00000281154|SLC25A31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2781066894531	2	479.277441	956.540328	0.66221	0.00031738	-0.32892	-0.00015764	0.33329	0.00015974	479.27719127091274	48.484	1.2038	48.484	48.162	49.366	0					103	72	2	0	0	0	0.536	1	18377	18377		41.427	2.1738	1	170910			28804	4966	19500	19572	29193	29193					0.06031992020336929
NVMDICNQI	9	Unmodified	_NVMDICNQI_					0	0	0			REV__IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant	REV__IQGAP2|p.K608Nfs*42|1|0.36|ENSG00000145703|chr5:76637072-76637072|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2401733398438	2	525.241352	1048.46815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.204	1	39.204	38.704	39.704	0								0	0	0	0.21054	1	14916	14916		49.442	5.3247	1		+		28805	15281	19501	19573	29194	29194					-0.0541442643989285
NVMGEQFSY	9	Unmodified	_NVMGEQFSY_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7324829101562	2	537.731674	1073.4488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.297	1	44.297	43.797	44.797	0								0	0	0	0.3245	1	17748	17748		30.318	2.0634	1				28806	1476	19502	19574	29195	29195					-0.08499059459154523
NVMQVNKIV	9	Unmodified	_NVMQVNKIV_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7958374023438	2	522.797152	1043.57975	-1.2956	-0.00067733	-0.87833	-0.00045919	-2.1739	-0.0011365	522.7965561304314	25.168	0.50978	25.168	25.029	25.539	0					28	12	4	0	0	0	0.18605	1	7947	7947		63.306	6.5852	1	1648200	+		28807	15586	19503	19575	29196	29196					0.05970375979518394
NVNAKDNEL	9	Unmodified	_NVNAKDNEL_					0	0	0		PPP1R16B|p.F497Sfs*24|1|0.06|ENSG00000101445|chr20:38918447-38918447|C/-|frameshift_variant;nc|ENSG00000101445|Q96T49-2|PPP1R16B;ENSG00000101445|ENST00000299824|PPP1R16B	PPP1R16B|p.F497Sfs*24|1|0.06|ENSG00000101445|chr20:38918447-38918447|C/-|frameshift_variant	PPP1R16B|p.F497Sfs*24|1|0.06|ENSG00000101445|chr20:38918447-38918447|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7556457519531	2	508.753995	1015.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.42	1	37.42	36.92	37.92	0								0	0	0	0.3119	1	14635	14635		32.812	6.1195	1				28808	2124	19504	19576	29197	29197					-0.0136891232148173
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.25152587890625	2	487.251089	972.487624	-0.053651	-2.6141E-05	0.042698	2.0805E-05	-0.010952	-5.3365E-06	487.25111523446265	15.942	0.11595	15.942	15.898	16.014	0					8	5	2	0	0	0	0.12834	1	3558	3558		72.879	8.672	1	73072			28809	3013	19505	19577	29198	29198					0.0002798916685833319
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.250732421875	2	487.251089	972.487624	0.72516	0.00035333	-3.4634	-0.0016876	-2.7383	-0.0013342	487.250400013634	16.239	0.31531	16.239	16.149	16.464	0					13	7	4	0	0	0	0.15558	1	4368	4368		66.962	6.8437	1	1100100			28810	3013	19505	19577	29199	29199					0.0002798916685833319
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.25079345703125	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.955	1	15.955	15.455	16.455	0								0	0	0	0.018495	1	3735	3735		101.46	11.09	1				28811	3013	19505	19577	29200	29200					0.0002798916685833319
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2506103515625	2	487.251089	972.487624	-0.083604	-4.0736E-05	-0.92514	-0.00045077	-1.0087	-0.00049151	487.2505874319415	16.188	0.16849	16.188	16.128	16.297	0					5	3	2	0	0	0	0.035106	1	4586	4586		104.01	24.301	1	552520			28812	3013	19505	19577	29201	29201					0.0002798916685833319
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2515869140625	2	487.251089	972.487624	0.43756	0.0002132	-0.50338	-0.00024527	-0.06582	-3.2071E-05	487.2512206538336	15.981	0.13173	15.981	15.925	16.056	0					6	4	2	0	0	0	0.25761	1	3695	3695		54.722	1.7857	1	98973			28813	3013	19505	19577	29202	29202					0.0002798916685833319
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2508544921875	2	487.251089	972.487624	-0.2313	-0.0001127	0.23226	0.00011317	0.00095919	4.6737E-07	487.2511255999701	15.996	0.098104	15.996	15.941	16.039	0					6	3	2	0	0	0	0.13726	1	3693	3693		70.816	5.3508	1	82784			28814	3013	19505	19577	29203	29203					0.0002798916685833319
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.25091552734375	2	487.251089	972.487624	-0.53908	-0.00026267	0.024862	1.2114E-05	-0.51422	-0.00025056	487.25111780512344	16.157	0.21991	16.157	16.047	16.267	0					6	4	2	0	0	0	0.076532	1	4425	4425		85.862	11.607	1	636070			28815	3013	19505	19577	29204	29204					0.0002798916685833319
NVNEPATTK	9	Unmodified	_NVNEPATTK_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2508239746094	2	487.251089	972.487624	0.81307	0.00039617	-1.1385	-0.00055474	-0.32544	-0.00015857	487.25061247976873	16.191	0.17052	16.191	16.08	16.251	0					6	3	2	0	0	0	0.047855	1	4421	4421		96.034	2.8381	1	643140			28816	3013	19505	19577	29205	29205					0.0002798916685833319
NVPDLQSI	8	Unmodified	_NVPDLQSI_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.23712158203125	2	443.23745	884.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.62	1	36.62	36.12	37.12	0								0	0	0	1.7419	1	12399	12399		25.574	0.12388	1		+		28817	14823	19506	19578	29206	29206					0.013495056264787308
NVPVGKVL	8	Unmodified	_NVPVGKVL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2632141113281	2	413.263271	824.511988	0.060884	2.5161E-05	-0.53945	-0.00022293	-0.47856	-0.00019777	413.2630681516595	30.912	0.37568	30.912	30.782	31.157	0					18	8	4	0	0	0	0.65276	1	11594	11594		40.573	7.057	1	1100700			28818	2292;23086	19507	19579	29207	29207					0.09271294111044881
NVPVGKVL	8	Unmodified	_NVPVGKVL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2631530761719	2	413.263271	824.511988	-0.072435	-2.9935E-05	-0.20223	-8.3576E-05	-0.27467	-0.00011351	413.26315003442903	30.692	0.37574	30.692	30.583	30.958	0					21	10	3	0	0	0	0.65276	1	10476	10476		40.573	5.3719	1	1307400			28819	2292;23086	19507	19579	29208	29208					0.09271294111044881
NVPVGKVL	8	Unmodified	_NVPVGKVL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.26324462890625	2	413.263271	824.511988	-0.41228	-0.00017038	0.38057	0.00015727	-0.031712	-1.3105E-05	413.26340539933807	30.89	0.46088	30.89	30.78	31.241	0					23	9	4	0	0	0	0.66372	1	11471	11471		38.806	3.6054	1	4706500			28820	2292;23086	19507	19579	29209	29209					0.09271294111044881
NVQETISSL	9	Unmodified	_NVQETISSL_					0	0	0			REV__FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant	REV__FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7576904296875	2	495.758746	989.50294	-1.2163	-0.00060301	-0.34568	-0.00017137	-1.562	-0.00077438	495.75884743183104	25.378	0.22613	25.378	25.312	25.538	0					17	8	3	0	0	0	0.42902	1	7923	7923		39.253	2.8061	1	239180	+		28821	12966	19508	19580	29210	29210					0.007768559640567219
NVRDKLVAS	9	Unmodified	_NVRDKLVAS_					0	0	0			REV__CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	REV__CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2903747558594	2	501.290548	1000.56654	1.1212	0.00056206	-0.65814	-0.00032992	0.4631	0.00023215	501.2901843484689	48.265	0.69288	48.265	47.848	48.541	0					84	36	3	0	0	0	0.50761	1	19115	19115		39.253	6.4404	1	227460	+		28822	12505	19509	19581	29211	29211					0.06628261191792717
NVSDPLQIQLQ	11	Unmodified	_NVSDPLQIQLQ_					0	0	0			REV__ENST00000469445.1_1_2:27263203-27263702:+|nuORF	REV__ENST00000469445.1_1_2:27263203-27263702:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	627.83740234375	2	627.838059	1253.66157	0.18982	0.00011918	-0.32959	-0.00020693	-0.13976	-8.7748E-05	627.8377535272947	33.262	0.70526	33.262	33.125	33.83	0					36	27	2	0	0	0	0.68382	1	10766	10766		29.17	4.6509	1	459520	+		28823	19453	19510	19582	29212	29212					0.04488149872327085
NVSDPLQIQLQ	11	Unmodified	_NVSDPLQIQLQ_					0	0	0			REV__ENST00000469445.1_1_2:27263203-27263702:+|nuORF	REV__ENST00000469445.1_1_2:27263203-27263702:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.8382568359375	2	627.838059	1253.66157	-0.050757	-3.1867E-05	0.41945	0.00026335	0.36869	0.00023148	627.8382428718073	33.472	0.42712	33.472	33.326	33.753	0					16	10	3	0	0	0	0.30464	1	12803	12803		62.107	7.3311	1	411650	+		28824	19453	19510	19582	29213	29213					0.04488149872327085
NVSISIGK	8	Unmodified	_NVSISIGK_					0	0	0			REV__ENSG00000129988|ENST00000217407|LBP	REV__ENSG00000129988|ENST00000217407|LBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.242431640625	2	409.242535	816.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.584	1	15.584	15.084	16.084	0								0	0	0	1.7419	1	4142	4142		27.882	0	1		+		28825	14563	19511	19583	29214	29214					0.05494113351721808
NVSTVELV	8	Unmodified	_NVSTVELV_					0	0	0		nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.739013671875	2	430.739825	859.465098	-0.24837	-0.00010698	-0.66921	-0.00028826	-0.91758	-0.00039524	430.7393354791552	21.026	0.16028	21.026	20.907	21.067	0					7	4	2	0	0	0	0.66372	1	5731	5731		38.806	0	1	82130			28826	11446	19512	19584	29215	29215					0.02974389769235586
NVTESEDSDV	10	Unmodified	_NVTESEDSDV_					0	0	0		ENST00000479391.6_3_9:98729892-98767017:+|nuORF;ERCC6L2|p.T191Nfs*22|1|0.04|ENSG00000182150|chr9:96004683-96004683|C/-|frameshift_variant;ERCC6L2|p.T303Hfs*50|1|0.13|ENSG00000182150|chr9:96012537-96012537|A/-|frameshift_variant;ENSG00000182150|ENST00000653738|ERCC6L2	ENST00000479391.6_3_9:98729892-98767017:+|nuORF	ENST00000479391.6_3_9:98729892-98767017:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7289428710938	2	547.72784	1093.44113	3.8321	0.002099	-1.4992	-0.00082116	2.3329	0.0012778	547.7268867534646	18.824	0.64351	18.824	18.387	19.031	0					18	13	4	0	0	0	0.47859	1	5717	5717		47.657	1.7054	1	1359400			28827	6878	19513	19585	29216	29216					-0.10185540245743141
NVTGIVQVY	9	Unmodified	_NVTGIVQVY_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7752380371094	2	496.7742	991.533846	0.71732	0.00035634	0.80757	0.00040118	1.5249	0.00075752	496.7747820099625	44.795	0.070427	44.795	44.759	44.83	0					5	4	2	0	0	0	0.50858	1	16753	16753		31.53	3.2755	1	36421			28828	5992	19514	19586	29217	29217					0.03774054068958321
NVVILNGLPVC	11	Unmodified	_NVVILNGLPVC_					0	0	0			REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF	REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.8268432617188	2	570.825909	1139.63727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.227	1	32.227	31.727	32.727	0								0	0	0	0.34425	1	10743	10743		45.972	1.5951	1		+		28829	13523	19515	19587	29218	29218					0.07303218185097649
NVVKLLGEQY	10	Unmodified	_NVVKLLGEQY_					0	0	0		ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2	ENST00000444314.6_1_11:65101357-65109054:+|nuORF	ENST00000444314.6_1_11:65101357-65109054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.8275756835938	2	581.826963	1161.63937	-0.01609	-9.3617E-06	0.70694	0.00041132	0.69085	0.00040196	581.8274934060539	41.035	0.16039	41.035	40.96	41.12	0					12	7	2	0	0	0	0.27065	1	15602	15602		70.816	33.005	1	124440			28830	3879	19516	19588	29219	29219					0.06501970194585738
NVVKLLGEQY	10	Unmodified	_NVVKLLGEQY_					0	0	0		ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2	ENST00000444314.6_1_11:65101357-65109054:+|nuORF	ENST00000444314.6_1_11:65101357-65109054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.8267822265625	2	581.826963	1161.63937	1.4477	0.00084232	-1.2912	-0.00075124	0.15653	9.1076E-05	581.8261064004867	40.965	0.1631	40.965	40.922	41.085	0					9	6	2	0	0	0	0.2538	1	16109	16109		72.879	26.907	1	117840			28831	3879	19516	19588	29220	29220					0.06501970194585738
NVVQAVEQY	9	Unmodified	_NVVQAVEQY_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.267578125	2	525.266739	1048.51892	1.6266	0.00085438	-1.4083	-0.00073974	0.21826	0.00011465	525.2665130852612	41.881	0.10981	41.881	41.816	41.926	0					5	3	2	0	0	0	0.25716	1	16698	16698		54.776	17.748	1	54877			28832	107	19517	19589	29221	29221					-0.00339437799038933
NVVSWKKPRRN	11	Unmodified	_NVVSWKKPRRN_					0	0	0			REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP	REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	692.4054565429688	2	692.402027	1382.7895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.816	1	45.816	45.316	46.316	0								0	0	0	0.45674	1	14712	14712		19.104	1.6355	1		+		28833	21246	19518	19590	29222	29222					0.11341754976888296
NVWITLTVV	9	Unmodified	_NVWITLTVV_					0	0	0		nc|ENSG00000165186|Q96NR3-2|PTCHD1;PTCHD1|p.N789Mfs*8|1|0.33|ENSG00000165186|chrX:23393879-23393879|A/-|frameshift_variant;ENSG00000165186|ENST00000379361|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.8069458007812	2	522.808042	1043.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.792	1	28.792	28.292	29.292	0								0	0	0	0.2591	1	9317	9317		42.396	3.59	1				28834	5773	19519	19591	29223	29223					0.08147503999748551
NVYDFKTTY	9	Unmodified	_NVYDFKTTY_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.774658203125	2	575.774396	1149.53424	1.5901	0.00091554	-0.94681	-0.00054515	0.64329	0.00037039	575.7735973174287	38.187	0.22244	38.187	38.117	38.339	0					13	9	2	0	0	0	0.25761	1	14492	14492		54.722	21.91	1	135530			28835	11608	19520	19592	29224	29224					-0.03454571001839213
NVYDFKTTY	9	Unmodified	_NVYDFKTTY_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.7739868164062	2	575.774396	1149.53424	1.8468	0.0010633	-1.5737	-0.0009061	0.27308	0.00015723	575.7733657473481	38.143	0.24255	38.143	38.039	38.282	0					19	8	3	0	0	0	0.035106	1	14945	14945		104.01	52.821	1	450070			28836	11608	19520	19592	29225	29225					-0.03454571001839213
NVYDFKTTY	9	Unmodified	_NVYDFKTTY_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.7750854492188	2	575.774396	1149.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.959	1	37.959	37.459	38.459	0								0	0	0	0.29356	1	13587	13587		36.447	0	1				28837	11608	19520	19592	29226	29226					-0.03454571001839213
NVYDFKTTY	9	Unmodified	_NVYDFKTTY_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2763671875	2	575.774396	1149.53424	1.6898	0.00097292	-1.1797	-0.00067921	0.5101	0.0002937	575.7735434664329	38.119	0.34305	38.119	37.974	38.317	0					16	7	3	0	0	0	0.029571	1	14952	14952		109.44	68.012	1	562760			28838	11608	19520	19592	29227	29227					-0.03454571001839213
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2861328125	2	531.284931	1060.55531	1.0721	0.0005696	0.10028	5.3275E-05	1.1724	0.00062287	531.2848656617622	28.915	0.28816	28.915	28.789	29.078	0					16	10	2	0	0	0	0.11898	1	9086	9086		75.043	33.617	1	111510			28839	4304	19521	19593	29228	29228					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.28515625	2	531.284931	1060.55531	2.4296	0.0012908	0.096395	5.1213E-05	2.526	0.001342	531.2841222295389	29.195	0.61575	29.195	28.968	29.584	0					38	15	4	0	0	0	0.035106	1	10384	10384		104.01	24.301	1	813580			28840	4304	19521	19593	29229	29229					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2857055664062	2	531.284931	1060.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.992	1	28.992	28.492	29.492	0								0	0	0	0.20989	1	9401	9401		49.536	20.386	1				28841	4304	19521	19593	29230	29230					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2858276367188	2	531.284931	1060.55531	0.9881	0.00052497	0.61092	0.00032457	1.599	0.00084954	531.2853237702559	29.171	0.328	29.171	29.022	29.35	0					17	7	3	0	0	0	0.054723	1	10783	10783		93.598	27.168	1	228470			28842	4304	19521	19593	29231	29231					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2858276367188	2	531.284931	1060.55531	1.9224	0.0010213	0.47854	0.00025424	2.4009	0.0012756	531.2850670590161	29.022	0.23745	29.022	28.893	29.13	0					10	6	2	0	0	0	0.10506	1	9686	9686		78.264	30.304	1	68078			28843	4304	19521	19593	29232	29232					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2852783203125	2	531.284931	1060.55531	1.181	0.00062747	-1.0738	-0.0005705	0.10724	5.6975E-05	531.2844190679801	28.972	0.39009	28.972	28.88	29.27	0					14	10	2	0	0	0	0.22837	1	9701	9701		58.23	15.834	1	86990			28844	4304	19521	19593	29233	29233					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2853393554688	2	531.284931	1060.55531	0.72423	0.00038477	0.33618	0.00017861	1.0604	0.00056338	531.2847296299394	29.166	0.46559	29.166	28.909	29.375	0					21	9	3	0	0	0	0.02429	1	10643	10643		114.89	35.444	1	750260			28845	4304	19521	19593	29234	29234					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.284912109375	2	531.284931	1060.55531	1.6894	0.00089756	-1.5867	-0.000843	0.10269	5.456E-05	531.2843746604789	29.151	0.46648	29.151	28.941	29.408	0					21	9	3	0	0	0	0.070005	1	10659	10659		88.177	23.97	1	768370			28846	4304	19521	19593	29235	29235					0.027454390976799914
NWAKGLAEM	9	Oxidation (M)	_NWAKGLAEM(Oxidation (M))_		NWAKGLAEM(1)		NWAKGLAEM(61)	0	0	1			REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant	REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2484741210938	2	518.250034	1034.48552	-1.4153	-0.0007335	-0.74725	-0.00038726	-2.1626	-0.0011208	518.2492629387273	29.204	0.15239	29.204	29.103	29.255	0					7	4	2	0	0	0	0.20551	1	9782	9782		60.972	9.6365	1	115050	+		28847	12324	19522	19594	29236	29236		478			-0.03034762842571581
NWDDSYDYW	9	Unmodified	_NWDDSYDYW_					0	0	0		nc|ENSG00000154655|Q8NA19-2|L3MBTL4;L3MBTL4|p.R516Gfs*63|1|0.34|ENSG00000154655|chr18:5969489-5969489|A/-|frameshift_variant;ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	632.2324829101562	2	632.233093	1262.45163	1.1105	0.00070208	-0.72714	-0.00045972	0.38334	0.00024236	632.2327241103072	49.711	0.88629	49.711	49.403	50.289	0					75	38	2	0	0	0	0.61124	1	17842	17842		16.473	3.0191	1	317330			28848	5096	19523	19595	29237	29237					-0.16909512800657467
NWDNENYY	8	Unmodified	_NWDNENYY_					0	0	0			REV__ENSG00000134827|ENST00000257264|TCN1	REV__ENSG00000134827|ENST00000257264|TCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.2882690429688	2	559.214703	1116.41485	-0.10541	-5.8948E-05	2.876	0.0016083	2.7706	0.0015494	559.2166016110995	11.909	0.4099	11.909	11.813	12.223	0					24	11	3	0	0	0	0.7126	1	2518	2518		31.955	13.63	1	597100	+		28849	14765	19524	19596	29238	29238					-0.13869764626565484
NWELTLSQI	9	Unmodified	_NWELTLSQI_					0	0	0			REV__ENSG00000169683|ENST00000306688|LRRC45	REV__ENSG00000169683|ENST00000306688|LRRC45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2763671875	2	552.290214	1102.56587	1.818	0.0010041	-0.94604	-0.00052249	0.87196	0.00048158	552.2896300363727	40.798	0.32833	40.798	40.702	41.03	0					11	5	3	0	0	0	0.35021	1	16198	16198		45.972	5.9141	1	128440	+		28850	16329	19525	19597	29239	29239					0.01869421752121525
NWFFINGHYQ	10	Unmodified	_NWFFINGHYQ_					0	0	0			REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.5407409667969	3	442.540245	1324.59891	0.57663	0.00025518	0.28838	0.00012762	0.86501	0.0003828	442.5404464700364	21.436	0.31359	21.436	21.311	21.624	0					16	7	4	0	0	0	0.52707	1	6826	6826		38.754	0	1	1060400	+		28851	16679	19526	19598	29240	29240					-0.05040951405180749
NWIHRTKK	8	Unmodified	_NWIHRTKK_					0	0	0			REV__SAMD3|p.L362Wfs*9|1|0.5|ENSG00000164483|chr6:130146120-130146120|A/-|frameshift_variant	REV__SAMD3|p.L362Wfs*9|1|0.5|ENSG00000164483|chr6:130146120-130146120|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.816162109375	2	541.814525	1081.6145	3.5475	0.0019221	-0.20078	-0.00010878	3.3468	0.0018133	541.8143454936793	49.889	0.12931	49.889	49.832	49.961	0					9	5	2	0	0	0	0.64144	1	19720	19720		42.396	3.59	1	83077	+		28852	21487	19527	19599	29241	29241					0.07695379902520472
NWPIKQKRGL	10	Unmodified	_NWPIKQKRGL_					0	0	0			REV__ENSG00000181804|ENST00000316549|SLC9A9	REV__ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	620.369140625	2	620.369664	1238.72478	0.17661	0.00010957	-1.1442	-0.00070984	-0.9676	-0.00060027	620.3688860257015	25.867	0.55887	25.867	25.734	26.293	0					21	15	2	0	0	0	0.60281	1	7801	7801		15.642	0	1	205270	+		28853	16857	19528	19600	29242	29242					0.11496180170888692
NWPLAGAL	8	Unmodified	_NWPLAGAL_					0	0	0		ENST00000268383.6_1_16:22357946-22358198:-|nuORF	ENST00000268383.6_1_16:22357946-22358198:-|nuORF	ENST00000268383.6_1_16:22357946-22358198:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.2337646484375	2	421.231971	840.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.016	1	42.016	41.516	42.516	0								0	0	0	1.7419	1	15940	15940		26.796	1.3459	1				28854	8370	19529	19601	29243	29243					0.022781480428420764
NWRPRFKYYHW	11	Unmodified	_NWRPRFKYYHW_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.6134643554688	3	551.612626	1651.81605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.465	1	40.465	39.965	40.965	0								0	0	0	0.45674	1	14373	14373		3.6191	2.2003	1				28855	3342	19530	19602	29244	29244					0.016214438682254695
NWRRNSTL	8	Unmodified	_NWRRNSTL_					0	0	0		ENST00000330070.5_1_17:46620914-46621888:-|nuORF	ENST00000330070.5_1_17:46620914-46621888:-|nuORF	ENST00000330070.5_1_17:46620914-46621888:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7779541015625	2	523.778139	1045.54173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.53	1	26.53	26.03	27.03	0								0	0	0	1.7419	1	9507	9507		37.159	0.13063	1				28856	8667	19531	19603	29245	29245					0.020776261090986736
NWSITEGPMQS	11	Unmodified	_NWSITEGPMQS_					0	0	0			REV__ENST00000461049.1_1_3:169780199-169780457:+|nuORF	REV__ENST00000461049.1_1_3:169780199-169780457:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	625.2798461914062	2	625.27952	1248.54449	-0.70038	-0.00043793	1.6412	0.0010262	0.94081	0.00058827	625.7821102172222	34.08	0.06826	34.08	34.03	34.098	0					4	2	2	0	0	0	0.77123	1	11481	11481		20.837	0.84038	1	36601	+		28857	19380	19532	19604	29246	29246					-0.0698433133893559
NWVIEMFLPA	10	Unmodified	_NWVIEMFLPA_					0	0	0			REV__nc|ENSG00000167703|Q8N370-2|SLC43A2	REV__nc|ENSG00000167703|Q8N370-2|SLC43A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.3154296875	2	610.312635	1218.61072	0.48507	0.00029604	2.7856	0.0017001	3.2707	0.0019962	610.3145996567932	25.333	0.2705	25.333	25.171	25.442	0					8	5	2	0	0	0	0.65051	1	8991	8991		16.473	0	1	163560	+		28858	20388	19533	19605	29247	29247					0.01015529293772488
NWWHLCSL	8	Unmodified	_NWWHLCSL_					0	0	0			REV__ENST00000467585.1_1_3:186502182-186503751:+|nuORF	REV__ENST00000467585.1_1_3:186502182-186503751:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7640991210938	2	529.747462	1057.48037	0.11392	6.0348E-05	0.46456	0.0002461	0.57848	0.00030645	529.7477022499897	28.287	0.33086	28.287	28.195	28.526	0					22	8	4	0	0	0	0.59411	1	9968	9968		50.025	50.025	1	2163400	+		28859	19428	19534	19606	29248	29248					-0.04607021914557663
NWWILYSRRS	10	Unmodified	_NWWILYSRRS_					0	0	0			REV__ENST00000470690.5_1_17:39987086-39988698:-|nuORF	REV__ENST00000470690.5_1_17:39987086-39988698:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	690.860595703125	2	690.862203	1379.70985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.647	1	34.647	34.147	35.147	0								0	0	0	0.4201	1	11338	11338		14.137	0.68308	1		+		28860	19474	19535	19607	29249	29249					0.035186883028927696
NWYPFQKKLG	10	Unmodified	_NWYPFQKKLG_					0	0	0		ENST00000317135.12_1_X:114418990-114419065:-|nuORF	ENST00000317135.12_1_X:114418990-114419065:-|nuORF	ENST00000317135.12_1_X:114418990-114419065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.5652160644531	3	427.564391	1279.67134	0.92932	0.00039735	0.96622	0.00041312	1.8955	0.00081047	427.56476869276185	13.696	0.15355	13.696	13.639	13.793	0					10	3	4	0	0	0	0.69544	1	3403	3403		22.58	2.5492	1	855170			28861	8584	19536	19608	29250	29250					0.04269382668371691
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;SPAG9|p.R484Kfs*7|1|0.28|ENSG00000008294|chr17:51005237-51005238|-/T|frameshift_variant;SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.278076171875	2	540.277638	1078.54072	2.0935	0.0011311	-0.58162	-0.00031424	1.5119	0.00081685	540.2768826695693	38.309	0.29111	38.309	38.202	38.493	0					12	6	3	0	0	0	0.061298	1	15067	15067		91.265	31.147	1	206670			28862	1016	19537	19609	29251	29251					0.004593669495079666
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;SPAG9|p.R484Kfs*7|1|0.28|ENSG00000008294|chr17:51005237-51005238|-/T|frameshift_variant;SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.277587890625	2	540.277638	1078.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.37	1	38.37	37.87	38.87	0								0	0	0	0.19847	1	15081	15081		51.193	8.7182	1				28863	1016	19537	19609	29252	29252					0.004593669495079666
NYALRVVGY	9	Unmodified	_NYALRVVGY_					0	0	0			REV__ENSG00000004660|ENST00000348335|CAMKK1	REV__ENSG00000004660|ENST00000348335|CAMKK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7892456054688	2	527.787641	1053.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.463	1	28.463	27.963	28.963	0								0	0	0	0.1836	1	9181	9181		53.351	14.545	1		+		28864	12825	19538	19610	29253	29253					0.03609162680140798
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7931518554688	2	548.792924	1095.57129	0.50057	0.00027471	0.022413	1.23E-05	0.52298	0.00028701	548.7928956070501	41.675	0.24596	41.675	41.555	41.8	0					24	12	3	0	0	0	0.12239	1	15815	15815		74.255	26.598	1	231820			28865	4070	19539	19611	29254	29254					0.027331453345595946
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.79248046875	2	548.792924	1095.57129	1.7651	0.00096869	-1.8031	-0.00098954	-0.037989	-2.0848E-05	548.7918785784681	41.618	0.1861	41.618	41.564	41.75	0					11	7	2	0	0	0	0.1115	1	16363	16363		76.774	21.998	1	90509			28866	4070	19539	19611	29255	29255					0.027331453345595946
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7937622070312	2	548.792924	1095.57129	0.27737	0.00015222	0.69094	0.00037918	0.96831	0.0005314	548.7933623256647	41.605	0.18405	41.605	41.526	41.71	0					13	7	2	0	0	0	0.047412	1	16360	16360		96.19	29.761	1	122140			28867	4070	19539	19611	29256	29256					0.027331453345595946
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2860107421875	2	549.284931	1096.55531	3.7829	0.0020779	-2.5446	-0.0013977	1.2383	0.00068018	549.2831727068876	44.049	0.21428	44.049	43.973	44.188	0					10	9	2	0	0	0	0.078509	1	17656	17656		85.161	32.862	1	81664			28868	234	19540	19612	29257	29257					0.010894390976773138
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.7730102539062	2	547.772522	1093.53049	1.2364	0.00067726	-0.68447	-0.00037493	0.55192	0.00030233	547.7723262593103	24.212	0.56395	24.212	24.12	24.684	0					29	17	4	0	0	0	0.1424	1	7117	7117		69.628	28.849	1	450840			28869	3319;10430	19541	19613	29258	29258					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.772705078125	2	547.772522	1093.53049	0.47189	0.00025849	0.10689	5.8552E-05	0.57879	0.00031704	547.7725698244006	24.486	0.98658	24.486	24.388	25.374	0					45	23	4	0	0	0	0.037569	1	8256	8256		101.6	46.097	1	2770900			28870	3319;10430	19541	19613	29259	29259					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2747192382812	2	547.772522	1093.53049	-0.28065	-0.00015373	0.59213	0.00032435	0.31147	0.00017062	547.7729243339926	24.246	0.3566	24.246	24.17	24.526	0					20	11	3	0	0	0	0.30951	1	7387	7387		49.442	16.629	1	225270			28871	3319;10430	19541	19613	29260	29260					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.772705078125	2	547.772522	1093.53049	0.32926	0.00018036	0.23562	0.00012907	0.56488	0.00030942	547.7726024836577	24.485	0.81175	24.485	24.326	25.138	0					24	16	2	0	0	0	0.037569	1	8565	8565		101.6	55.628	1	1159500			28872	3319;10430	19541	19613	29261	29261					-0.012531959850548446
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant;BIRC6|p.I2261Yfs*13|1|0.3|ENSG00000115760|chr2:32476268-32476268|A/-|frameshift_variant;BIRC6|p.I914Yfs*2|1|0.07|ENSG00000115760|chr2:32416027-32416027|A/-|frameshift_variant;BIRC6|p.T1339Qfs*21|1|0.44|ENSG00000115760|chr2:32442131-32442131|A/-|frameshift_variant;BIRC6|p.R1406Dfs*3|1|0.35|ENSG00000115760|chr2:32442431-32442431|C/-|frameshift_variant;BIRC6|p.P1736Qfs*17|1|0.37|ENSG00000115760|chr2:32464770-32464770|C/-|frameshift_variant;BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.8023681640625	2	525.800749	1049.58694	0.098339	5.1707E-05	0.71872	0.0003779	0.81706	0.00042961	525.8011984029819	39.033	0.21933	39.033	38.941	39.16	0					16	8	3	0	0	0	0.53064	1	14881	14881		29.17	1.2878	1	399640			28873	301;300	19542	19614	29262	29262					0.06413431851638052
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant;BIRC6|p.I2261Yfs*13|1|0.3|ENSG00000115760|chr2:32476268-32476268|A/-|frameshift_variant;BIRC6|p.I914Yfs*2|1|0.07|ENSG00000115760|chr2:32416027-32416027|A/-|frameshift_variant;BIRC6|p.T1339Qfs*21|1|0.44|ENSG00000115760|chr2:32442131-32442131|A/-|frameshift_variant;BIRC6|p.R1406Dfs*3|1|0.35|ENSG00000115760|chr2:32442431-32442431|C/-|frameshift_variant;BIRC6|p.P1736Qfs*17|1|0.37|ENSG00000115760|chr2:32464770-32464770|C/-|frameshift_variant;BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8005981445312	2	525.800749	1049.58694	0.18427	9.6887E-05	-0.41324	-0.00021728	-0.22897	-0.00012039	525.8006830936548	38.979	0.1687	38.979	38.938	39.107	0					8	5	2	0	0	0	0.12278	1	15319	15319		74.165	31.301	1	100940			28874	301;300	19542	19614	29263	29263					0.06413431851638052
NYDNLLKV	8	Unmodified	_NYDNLLKV_					0	0	0		tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.26470947265625	2	489.766374	977.518196	0.80063	0.00039212	-3.0601	-0.0014987	-2.2594	-0.0011066	489.76598666080343	26.046	0.59126	26.046	25.916	26.507	0					30	14	4	0	0	0	0.61938	1	9028	9028		45.952	5.1738	1	738540			28875	22729	19543	19615	29264	29264					0.028537675519032746
NYGAYINDF	9	Unmodified	_NYGAYINDF_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7361450195312	2	538.737814	1075.46108	-1.4654	-0.00078949	-1.4781	-0.00079631	-2.9435	-0.0015858	538.7369996868489	27.944	0.25275	27.944	27.816	28.069	0					15	6	3	0	0	0	0.48389	1	9217	9217		34.173	0.25091	1	292530			28876	6224	19544	19616	29265	29265					-0.0736369972448756
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2470092773438	2	554.246338	1106.47812	1.8174	0.0010073	-0.78645	-0.00043589	1.0309	0.00057138	554.2459253645205	31.008	0.2239	31.008	30.916	31.14	0					10	5	2	0	0	0	0.15163	1	11258	11258		67.494	36.99	1	263720			28877	5071	19545	19617	29266	29266					-0.07085779118665414
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.246826171875	2	554.246338	1106.47812	0.16053	8.8973E-05	1.0315	0.00057169	1.192	0.00066066	554.2467829575351	30.81	0.1589	30.81	30.742	30.901	0					11	5	3	0	0	0	0.035106	1	10163	10163		104.01	45.232	1	195250			28878	5071	19545	19617	29267	29267					-0.07085779118665414
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.2465209960938	2	554.246338	1106.47812	1.1377	0.00063057	-0.27994	-0.00015516	0.85776	0.00047541	554.2460751006357	30.834	0.1945	30.834	30.764	30.958	0					12	5	3	0	0	0	0.076532	1	10541	10541		85.862	46.609	1	181700			28879	5071	19545	19617	29268	29268					-0.07085779118665414
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.2470703125	2	554.246338	1106.47812	-1.1416	-0.00063272	2.0051	0.0011113	0.86349	0.00047858	554.2475496017726	30.829	0.15038	30.829	30.753	30.903	0					7	4	2	0	0	0	0.11898	1	10536	10536		75.043	30.927	1	114670			28880	5071	19545	19617	29269	29269					-0.07085779118665414
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.246826171875	2	554.246338	1106.47812	1.8205	0.001009	-1.0992	-0.00060922	0.72129	0.00039977	554.2456801685528	30.97	0.41021	30.97	30.865	31.275	0					18	8	4	0	0	0	0.0023831	1	11538	11538		172.25	113.47	1	1420800			28881	5071	19545	19617	29270	29270					-0.07085779118665414
NYGKKSKL	8	Unmodified	_NYGKKSKL_					0	0	0		ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000243910|ENST00000490341|TUBA4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2774353027344	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.387	1	56.387	55.887	56.887	0								0	0	0	1.7419	1	20121	20121		27.882	2.4321	1				28882	7961	19546	19618	29271	29271					0.06845777651415119
NYGPMKGGSF	10	Unmodified	_NYGPMKGGSF_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000451198.2_1_20:35249346-35249823:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2421875	2	529.242209	1056.46987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.143	1	32.143	31.643	32.643	0								0	0	0	0.37602	1	10375	10375		37.812	5.8567	1				28883	6211	19547	19619	29272	29272					-0.05611049359640674
NYGPMKGGSF	10	Unmodified	_NYGPMKGGSF_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000451198.2_1_20:35249346-35249823:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.24267578125	2	529.242209	1056.46987	2.2772	0.0012052	-2.0528	-0.0010864	0.22448	0.0001188	529.2412624291186	32.385	0.37337	32.385	32.181	32.555	0					16	9	2	0	0	0	0.38194	1	11859	11859		58.23	12.278	1	344360			28884	6211	19547	19619	29273	29273					-0.05611049359640674
NYGPMKGGSF	10	Unmodified	_NYGPMKGGSF_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000451198.2_1_20:35249346-35249823:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2428588867188	2	529.242209	1056.46987	1.7389	0.00092029	-0.47034	-0.00024892	1.2685	0.00067137	529.2417550837574	32.394	0.43619	32.394	32.174	32.61	0					30	10	4	0	0	0	0.14426	1	12304	12304		87.696	27.402	1	355120			28885	6211	19547	19619	29274	29274					-0.05611049359640674
NYGPMKGGSF	10	Unmodified	_NYGPMKGGSF_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000451198.2_1_20:35249346-35249823:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.242431640625	2	529.242209	1056.46987	1.6299	0.00086264	-1.5017	-0.00079475	0.12826	6.7882E-05	529.2416052585046	32.312	0.47136	32.312	32.102	32.573	0					22	9	3	0	0	0	0.43008	1	12159	12159		52.937	1.6012	1	486410			28886	6211	19547	19619	29275	29275					-0.05611049359640674
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.7738037109375	2	579.272355	1156.53016	1.7341	0.0010045	-1.325	-0.00076756	0.40904	0.00023695	579.2715102831745	44.193	0.30962	44.193	44.103	44.412	0					27	13	3	0	0	0	0.016683	1	17693	17693		127.46	69.65	1	168660			28887	2854	19548	19620	29276	29276					-0.04184615704912176
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8057861328125	2	524.8055	1047.59645	1.8496	0.00097067	-0.69506	-0.00036477	1.1545	0.0006059	524.8051369497177	42.66	0.14504	42.66	42.595	42.74	0					13	7	2	0	0	0	0.25716	1	16133	16133		54.776	15.523	1	145710			28888	4105	19549	19621	29277	29277					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8057861328125	2	524.8055	1047.59645	1.7792	0.00093371	-0.7608	-0.00039927	1.0183	0.00053443	524.8049918834198	42.604	0.38983	42.604	42.52	42.91	0					32	19	3	0	0	0	0.19605	1	16709	16709		62.107	12.666	1	262820			28889	4105	19549	19621	29278	29278					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8060302734375	2	524.8055	1047.59645	1.6261	0.00085341	-0.32481	-0.00017046	1.3013	0.00068294	524.8053369759923	42.584	0.48737	42.584	42.473	42.96	0					18	14	2	0	0	0	0.22837	1	16997	16997		58.23	5.2932	1	737760			28890	4105	19549	19621	29279	29279					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8060302734375	2	524.8055	1047.59645	3.4349	0.0018026	-2.0584	-0.0010802	1.3765	0.0007224	524.8041556859172	42.578	0.37636	42.578	42.463	42.839	0					15	10	2	0	0	0	0.22837	1	16990	16990		58.23	8.2054	1	600090			28891	4105	19549	19621	29280	29280					0.07455200137133033
NYIGAISI	8	Unmodified	_NYIGAISI_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.7362365722656	2	425.737086	849.459619	-1.0555	-0.00044936	0.66963	0.00028508	-0.38587	-0.00016428	425.7373232486401	41.383	0.32278	41.383	41.259	41.582	0					36	18	3	0	0	0	0.67394	1	13739	13739		37.159	1.5408	1	436430			28892	22731	19550	19622	29281	29281					0.028867109774296296
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENSG00000055332|ENST00000233057|EIF2AK2;nc|ENSG00000055332|P19525-2|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENSG00000055332|ENST00000233057|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3175048828125	2	538.316566	1074.61858	0.29815	0.0001605	-0.32655	-0.00017579	-0.028401	-1.5289E-05	538.3165180847768	45.82	0.12532	45.82	45.777	45.902	0					12	7	2	0	0	0	0.11898	1	17691	17691		68.787	24.67	1	65918			28893	1280	19551	19623	29282	29282					0.08425424605570697
NYIHGSSQAQF	11	Unmodified	_NYIHGSSQAQF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.290283203125	2	626.291276	1250.568	0.18732	0.00011732	-0.22052	-0.00013811	-0.033199	-2.0792E-05	626.2909044568019	29.418	0.12734	29.418	29.332	29.459	0					9	4	3	0	0	0	0.32196	1	9272	9272		60.167	21.361	1	145010			28894	2157	19552	19624	29283	29283					-0.04726149510088362
NYIHGSSQAQF	11	Unmodified	_NYIHGSSQAQF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	626.2913208007812	2	626.291276	1250.568	-0.0011635	-7.287E-07	-0.23535	-0.0001474	-0.23651	-0.00014812	626.2910341105721	29.691	0.21879	29.691	29.582	29.801	0					6	4	2	0	0	0	0.67983	1	11037	11037		29.551	1.4693	1	206530			28895	2157	19552	19624	29284	29284					-0.04726149510088362
NYIHVGAQL	9	Unmodified	_NYIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7716979980469	2	507.771991	1013.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.765	1	35.765	35.265	36.265	0								0	0	0	0.22106	1	12103	12103		47.916	0.25827	1				28896	6618	19553	19625	29285	29285					0.023205896460467557
NYIHVGAQL	9	Unmodified	_NYIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.77239990234375	2	507.771991	1013.52943	1.2977	0.00065894	-1.1211	-0.00056925	0.17664	8.9691E-05	507.77151557964834	35.873	0.16269	35.873	35.817	35.979	0					5	3	2	0	0	0	0.22377	1	13904	13904		58.782	2.0609	1	243030			28897	6618	19553	19625	29286	29286					0.023205896460467557
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8041381835938	2	554.803488	1107.59242	0.59827	0.00033192	0.20674	0.0001147	0.80501	0.00044662	554.8035829691008	39.857	0.090878	39.857	39.79	39.88	0					5	3	2	0	0	0	0.16806	1	15184	15184		65.465	14.273	1	80609			28898	1825	19554	19626	29287	29287					0.0429311064342528
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8036499023438	2	554.803488	1107.59242	1.6478	0.00091419	-0.3303	-0.00018325	1.3175	0.00073094	554.8030710331599	39.828	0.23316	39.828	39.732	39.966	0					14	8	2	0	0	0	0.076532	1	15675	15675		85.862	22.328	1	165750			28899	1825	19554	19626	29288	29288					0.0429311064342528
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8037109375	2	554.803488	1107.59242	3.5856	0.0019893	-2.3333	-0.0012945	1.2523	0.00069476	554.8020461898248	39.777	0.59201	39.777	39.5	40.092	0					25	13	3	0	0	0	0.022525	1	15755	15755		117.81	32.65	1	592170			28900	1825	19554	19626	29289	29289					0.0429311064342528
NYIRRCRE	8	Unmodified	_NYIRRCRE_					0	0	0			REV__ENSG00000266472|ENST00000614145|MRPS21	REV__ENSG00000266472|ENST00000614145|MRPS21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.2872314453125	2	555.285274	1108.556	1.418	0.00078737	2.4598	0.0013659	3.8777	0.0021532	555.2868208389419	36.058	0.14395	36.058	35.981	36.125	0					14	6	3	0	0	0	0.66372	1	11831	11831		38.806	5.9937	1	109610	+		28901	17791	19555	19627	29290	29290					0.006059552657234235
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7725524902344	2	504.771657	1007.52876	0.78732	0.00039742	0.3952	0.00019949	1.1825	0.0005969	504.7719210817288	46.315	0.21632	46.315	46.249	46.465	0					24	13	2	0	0	0	0.095583	1	17122	17122		80.455	5.4113	1	164880			28902	7301	19556	19628	29291	29291					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2735290527344	2	504.771657	1007.52876	-0.2256	-0.00011388	1.0734	0.00054181	0.84778	0.00042793	504.77208747335254	46.106	0.17634	46.106	46.033	46.209	0					14	11	2	0	0	0	0.18416	1	14773	14773		63.534	6.8128	1	51523			28903	7301	19556	19628	29292	29292					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7718505859375	2	504.771657	1007.52876	1.0455	0.00052775	-0.73001	-0.00036849	0.3155	0.00015925	504.7712618658654	46.3	0.2915	46.3	46.207	46.499	0					44	16	4	0	0	0	0.037924	1	17804	17804		101.25	10.883	1	820520			28904	7301	19556	19628	29293	29293					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7723388671875	2	504.771657	1007.52876	0.11626	5.8685E-05	0.05564	2.8086E-05	0.1719	8.677E-05	504.77192930343074	46.103	0.08609	46.103	46.035	46.121	0					8	5	2	0	0	0	0.30841	1	15608	15608		49.536	1.8787	1	46259			28905	7301	19556	19628	29294	29294					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7735290527344	2	504.771657	1007.52876	-0.35329	-0.00017833	1.5881	0.00080161	1.2348	0.00062328	504.772500549904	46.261	0.22772	46.261	46.182	46.409	0					19	10	2	0	0	0	0.037712	1	18497	18497		101.46	21.747	1	205910			28906	7301	19556	19628	29295	29295					0.025297502063381216
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.2908325195312	2	592.290745	1182.56694	0.26794	0.0001587	-0.038482	-2.2792E-05	0.22946	0.0001359	592.2906235369511	37.312	0.357	37.312	37.168	37.525	0					18	10	3	0	0	0	0.38194	1	14118	14118		58.23	1.5089	1	216030			28907	3396	19557	19629	29296	29296					-0.017043638790028126
NYKKRKFT	8	Unmodified	_NYKKRKFT_					0	0	0		ENST00000567143.1_1_16:58438378-58438630:+|nuORF;nc|ENSG00000181938|Q9BRX5-2|GINS3;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3	ENST00000567143.1_1_16:58438378-58438630:+|nuORF	ENST00000567143.1_1_16:58438378-58438630:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.8162841796875	2	542.816733	1083.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.746	1	40.746	40.246	41.246	0								0	0	0	1.7419	1	14454	14454		33.516	3.0119	1				28908	6871	19558	19630	29297	29297					0.08044844325422673
NYKTNIGK	8	Unmodified	_NYKTNIGK_					0	0	0		tr|U7SVT4|U7SVT4_FUSNUMolybdatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01334PE=4SV=1	tr|U7SVT4|U7SVT4_FUSNUMolybdatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01334PE=4SV=1	tr|U7SVT4|U7SVT4_FUSNUMolybdatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01334PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2566833496094	2	469.258717	936.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.288	1	37.288	36.788	37.788	0								0	0	0	1.7419	1	12217	12217		35.618	1.4457	1				28909	22847	19559	19631	29298	29298					0.0320890075471425
NYLLKPFLL	9	Unmodified	_NYLLKPFLL_					0	0	0			REV__ENST00000392455.7_2_3:191112649-191112850:+|nuORF	REV__ENST00000392455.7_2_3:191112649-191112850:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.2290954589844	3	374.230349	1119.66922	-2.1142	-0.00079119	-1.5891	-0.00059469	-3.7033	-0.0013859	374.2297617110322	26.156	0.13305	26.156	26.069	26.202	0					9	3	4	0	0	0	0.50461	1	8369	8369		39.253	39.253	1	261550	+		28910	18825	19560	19632	29299	29299					0.11416953930574891
NYLNEPKL	8	Unmodified	_NYLNEPKL_					0	0	0			REV__ENSG00000064989|ENST00000392370|CALCRL	REV__ENSG00000064989|ENST00000392370|CALCRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.76568603515625	2	495.766374	989.518196	2.848	0.0014119	-3.4933	-0.0017319	-0.64528	-0.00031991	495.7648039877642	46.252	0.11429	46.252	46.19	46.304	0					7	5	2	0	0	0	0.57171	1	18511	18511		52.937	1.744	1	33310	+		28911	13112	19561	19633	29300	29300					0.023017675519099612
NYLNFSSL	8	Unmodified	_NYLNFSSL_					0	0	0		PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.23773193359375	2	479.23745	956.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.073	1	46.073	45.573	46.573	0								0	0	0	1.7419	1	18444	18444		29.15	6.1071	1				28912	4643	19562	19634	29301	29301					-0.01962494373503887
NYLNRIVIY	9	Unmodified	_NYLNRIVIY_					0	0	0		tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	584.3294067382812	2	584.329673	1166.64479	1.3843	0.0008089	-1.1616	-0.00067877	0.22271	0.00013014	584.329043550039	41.713	0.15855	41.713	41.631	41.789	0					9	6	2	0	0	0	0.35045	1	16386	16386		45.952	1.5748	1	99063			28913	22820	19563	19635	29302	29302					0.06813693777053231
NYLTREVY	8	Unmodified	_NYLTREVY_					0	0	0		SPINT1|p.K371Nfs*82|1|0.38|ENSG00000166145|chr15:40854517-40854517|A/-|frameshift_variant;ENSG00000166145|ENST00000562057|SPINT1;nc|ENSG00000166145|O43278|SPINT1	SPINT1|p.K371Nfs*82|1|0.38|ENSG00000166145|chr15:40854517-40854517|A/-|frameshift_variant	SPINT1|p.K371Nfs*82|1|0.38|ENSG00000166145|chr15:40854517-40854517|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.27099609375	2	529.269281	1056.52401	1.1809	0.000625	0.48387	0.0002561	1.6647	0.0008811	529.2701079880009	32.579	0.16035	32.579	32.494	32.654	0					11	7	2	0	0	0	0.60719	1	10528	10528		47.916	5.5195	1	50667			28914	5861	19564	19636	29303	29303					-0.0019913393641672883
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.3211669921875	2	551.324391	1100.63423	1.8162	0.0010013	-3.6429	-0.0020084	-1.8267	-0.0010071	551.3222380670937	44.323	0.26814	44.323	44.168	44.436	0					14	11	2	0	0	0	0.16806	1	17751	17751		68.787	19.251	1	63808			28915	3055	19565	19637	29304	29304					0.08793711122621062
NYNAAINK	8	Unmodified	_NYNAAINK_					0	0	0		nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9	nc|ENSG00000101981|P00740-2|F9	nc|ENSG00000101981|P00740-2|F9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.23553466796875	2	454.235242	906.45593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.122	1	14.122	13.622	14.622	0								0	0	0	1.7419	1	2860	2860		26.796	2.5934	1				28916	2147	19566	19638	29305	29305					-0.0010395879644420347
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.2924194335938	2	593.292953	1184.57135	1.5059	0.00089345	-3.6079	-0.0021406	-2.102	-0.0012471	593.2898757150168	38.258	0.68332	38.258	38.156	38.839	0					20	14	3	0	0	0	0.040209	1	15041	15041		99.013	18.558	1	387740			28917	1440	19567	19639	29306	29306					-0.013548994561006111
NYNGVLSI	8	Unmodified	_NYNGVLSI_					0	0	0		ENSG00000091137|ENST00000644269|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.2317199707031	2	440.232168	878.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.056	1	43.056	42.556	43.556	0								0	0	0	1.7419	1	17217	17217		63.306	2.3343	1				28918	1853	19568	19640	29307	29307					0.00569522972057257
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.225341796875	2	544.225602	1086.43665	1.1699	0.00063671	-0.50352	-0.00027403	0.66641	0.00036268	544.2252875388514	27.779	0.31792	27.779	27.67	27.988	0					23	10	3	0	0	0	0.21263	1	8581	8581		60.118	25.946	1	392740			28919	517	19569	19641	29308	29308					-0.10310959877983805
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2259521484375	2	544.225602	1086.43665	0.36489	0.00019858	0.31042	0.00016894	0.67531	0.00036752	544.2258670465477	28.04	0.53427	28.04	27.912	28.447	0					39	13	5	0	0	0	0.00072198	1	9851	9851		185.72	89.528	1	2130900			28920	517	19569	19641	29309	29309					-0.10310959877983805
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2266845703125	2	544.225602	1086.43665	0.44328	0.00024124	0.43853	0.00023866	0.88181	0.0004799	544.2258615511473	27.765	0.31647	27.765	27.676	27.992	0					29	11	3	0	0	0	0.048471	1	8869	8869		95.815	24.519	1	441370			28921	517	19569	19641	29310	29310					-0.10310959877983805
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2259521484375	2	544.225602	1086.43665	1.9725	0.0010735	-1.015	-0.0005524	0.95752	0.0005211	544.2250119606407	28.046	0.48553	28.046	27.947	28.432	0					32	10	5	0	0	0	0.0059092	1	10226	10226		154.12	63.342	1	2481100			28922	517	19569	19641	29311	29311					-0.10310959877983805
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.225830078125	2	544.225602	1086.43665	0.32438	0.00017654	-0.32132	-0.00017487	0.0030598	1.6652E-06	544.2256183731649	28.079	0.14641	28.079	27.98	28.126	0					6	3	2	0	0	0	0.30841	1	10236	10236		49.536	3.5638	1	132480			28923	517	19569	19641	29312	29312					-0.10310959877983805
NYNNQSSNFGP	11	Unmodified	_NYNNQSSNFGP_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	621.2628784179688	2	621.262716	1240.51088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.577	1	31.577	31.077	32.077	0								0	0	0	0.23351	1	11921	11921		59.931	23.484	1				28924	517	19570	19642	29313	29313					-0.09975616786459796
NYNYLREW	8	Unmodified	_NYNYLREW_					0	0	0		CDH10|p.D763N|1|0.35|ENSG00000040731|chr5:24487743-24487743|C/T|missense_variant	CDH10|p.D763N|1|0.35|ENSG00000040731|chr5:24487743-24487743|C/T|missense_variant	CDH10|p.D763N|1|0.35|ENSG00000040731|chr5:24487743-24487743|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.2727661132812	2	579.272355	1156.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.288	1	44.288	43.788	44.788	0								0	0	0	1.7419	1	17256	17256		42.396	5.237	1				28925	445	19571	19643	29314	29314					-0.04184615704912176
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.7763061523438	2	581.775065	1161.53558	1.686	0.00098085	-0.10761	-6.2604E-05	1.5783	0.00091824	581.7751839761452	38.833	0.81116	38.833	38.627	39.438	0					28	17	3	0	0	0	0.024477	1	15291	15291		114.59	59.81	1	203560			28926	8420	19572	19644	29315	29315					-0.03872892122444682
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.7755737304688	2	581.775065	1161.53558	3.2365	0.0018829	-2.1823	-0.0012696	1.0542	0.00061329	581.7741147891802	38.865	0.6763	38.865	38.61	39.287	0					29	14	3	0	0	0	0.0059637	1	15283	15283		153.88	82.007	1	327590			28927	8420	19572	19644	29316	29316					-0.03872892122444682
NYQLRLNEA	9	Unmodified	_NYQLRLNEA_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.7932739257812	2	560.790912	1119.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.013	1	18.013	17.513	18.513	0								0	0	0	0.33579	1	4633	4633		14.865	2.6582	1		+		28928	16734	19573	19645	29317	29317					0.012270558408772558
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.20489501953125	3	372.204974	1113.59309	0.49558	0.00018446	-0.68272	-0.00025411	-0.18714	-6.9656E-05	372.2046660328741	26.594	0.13727	26.594	26.557	26.695	0					8	4	3	0	0	0	0.50858	1	8109	8109		31.53	8.0071	1	136380			28929	4735	19574	19646	29318	29318					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.8035888671875	2	557.803823	1113.59309	1.2948	0.00072222	-1.1451	-0.00063872	0.1497	8.3504E-05	557.8032460436859	26.589	0.1357	26.589	26.522	26.658	0					7	4	2	0	0	0	0.048471	1	8091	8091		102.77	58.657	1	119320			28930	4735	19574	19646	29319	29319					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.2048645019531	3	372.204974	1113.59309	0.78297	0.00029143	-0.63764	-0.00023733	0.14533	5.4094E-05	372.2047190622715	26.811	0.42488	26.811	26.715	27.14	0					25	10	4	0	0	0	0.25716	1	9305	9305		54.776	28.027	1	1192500			28931	4735	19574	19646	29320	29320					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.8040161132812	2	557.803823	1113.59309	0.54234	0.00030252	0.10104	5.6362E-05	0.64338	0.00035888	557.8037583756783	26.801	0.30787	26.801	26.702	27.01	0					13	7	3	0	0	0	0.0025054	1	9295	9295		157.21	71.849	1	1110100			28932	4735	19574	19646	29321	29321					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.80322265625	2	557.803823	1113.59309	-0.48629	-0.00027125	1.2721	0.0007096	0.78585	0.00043835	557.8043650726516	26.59	0.12265	26.59	26.536	26.658	0					6	4	2	0	0	0	0.032052	1	8376	8376		90.777	35.272	1	65542			28933	4735	19574	19646	29322	29322					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8043212890625	2	557.803823	1113.59309	-0.17519	-9.7719E-05	0.69819	0.00038945	0.52301	0.00029173	557.804168010098	26.853	0.21663	26.853	26.744	26.961	0					8	4	3	0	0	0	0.013878	1	9650	9650		116.9	53.597	1	750650			28934	4735	19574	19646	29323	29323					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.20513916015625	3	372.204974	1113.59309	-0.29718	-0.00011061	0.49271	0.00018339	0.19553	7.2778E-05	372.2051676285693	26.813	0.41501	26.813	26.705	27.12	0					18	8	3	0	0	0	0.17854	1	9504	9504		64.207	33.704	1	2036700			28935	4735	19574	19646	29324	29324					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.8043212890625	2	557.803823	1113.59309	3.4794	0.0019408	-3.1494	-0.0017567	0.33001	0.00018408	557.8023892365294	26.78	0.21412	26.78	26.671	26.885	0					10	4	3	0	0	0	0.0071053	1	9516	9516		133.81	56.966	1	875030			28936	4735	19574	19646	29325	29325					0.040839500831452824
NYQVTNSMF	9	Unmodified	_NYQVTNSMF_					0	0	0		ENST00000551873.5_1_12:70671967-70723208:+|nuORF;ENST00000549443.5_1_12:70671967-70726591:+|nuORF;ENST00000548021.5_1_12:70671967-70729348:+|nuORF;ENST00000547321.5_1_12:70671967-70723393:+|nuORF;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;CNOT2-GPCPD1|1|fusion	ENST00000551873.5_1_12:70671967-70723208:+|nuORF	ENST00000551873.5_1_12:70671967-70723208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.244384765625	2	552.244949	1102.47534	1.8174	0.0010036	-2.3543	-0.0013001	-0.53691	-0.00029651	552.2434602471493	45.082	0.1484	45.082	44.989	45.138	0					9	6	2	0	0	0	0.28897	1	18058	18058		51.193	15.574	1	46178			28937	572	19575	19647	29326	29326					-0.07179370567814658
NYQVTNSMF	9	Unmodified	_NYQVTNSMF_					0	0	0		ENST00000551873.5_1_12:70671967-70723208:+|nuORF;ENST00000549443.5_1_12:70671967-70726591:+|nuORF;ENST00000548021.5_1_12:70671967-70729348:+|nuORF;ENST00000547321.5_1_12:70671967-70723393:+|nuORF;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;CNOT2-GPCPD1|1|fusion	ENST00000551873.5_1_12:70671967-70723208:+|nuORF	ENST00000551873.5_1_12:70671967-70723208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2445068359375	2	552.244949	1102.47534	3.6766	0.0020304	-3.1424	-0.0017354	0.53428	0.00029505	552.2434477122209	45.101	0.16606	45.101	45.009	45.175	0					16	7	3	0	0	0	0.16806	1	18055	18055		65.465	22.601	1	113470			28938	572	19575	19647	29327	29327					-0.07179370567814658
NYRQQKGW	8	Unmodified	_NYRQQKGW_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B;ENST00000595476.1_1_19:39869154-39871842:+|nuORF	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.278564453125	2	540.27269	1078.53083	1.9833	0.0010715	3.9232	0.0021196	5.9064	0.0031911	540.2771055637782	38.281	0.31107	38.281	38.139	38.45	0					24	11	3	0	0	0	0.64096	1	15042	15042		42.474	1.9018	1	160810			28939	6759	19576	19648	29328	29328					-0.005297762651935045
NYSHDELY	8	Unmodified	_NYSHDELY_					0	0	0			REV__nc|ENSG00000170703|Q8N841-2|TTLL6	REV__nc|ENSG00000170703|Q8N841-2|TTLL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7215576171875	2	520.719621	1039.42469	1.4508	0.00075545	1.8627	0.00096994	3.3135	0.0017254	520.7203790095199	36.629	0.12269	36.629	36.563	36.685	0					6	3	2	0	0	0	0.58597	1	13831	13831		51.335	5.3835	1	58994	+		28940	16373	19577	19649	29329	29329					-0.09344576621174383
NYSIDLVKL	9	Unmodified	_NYSIDLVKL_					0	0	0			REV__ENSG00000187905|ENST00000442047|LRRC74B	REV__ENSG00000187905|ENST00000442047|LRRC74B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8040161132812	2	532.802957	1063.59136	1.7587	0.00093706	-0.78047	-0.00041584	0.97826	0.00052122	532.8030114476055	45.967	0.051823	45.967	45.919	45.971	0					4	2	2	0	0	0	0.27249	1	18408	18408		52.937	1.6012	1	40671	+		28941	17145	19578	19650	29330	29330					0.0621089627454694
NYSIVGGNP	9	Unmodified	_NYSIVGGNP_					0	0	0		PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant;PCDH7|p.D918Ifs*209|1|0.36|ENSG00000169851|chr4:30724168-30724168|A/-|frameshift_variant;nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;PCDH7|p.H835Tfs*53|1|0.16|ENSG00000169851|chr4:31142537-31142537|C/-|frameshift_variant;ENSG00000169851|ENST00000695919|PCDH7	PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant	PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.72747802734375	2	460.727249	919.439946	-0.87318	-0.0004023	0.37005	0.00017049	-0.50312	-0.0002318	460.72764151653325	30.58	0.37353	30.58	30.346	30.719	0					21	13	2	0	0	0	0.33044	1	10085	10085		47.657	0	1	68779			28942	6188	19579	19651	29331	29331					-0.022996650333197977
NYSSAVQKF	9	Unmodified	_NYSSAVQKF_					0	0	0		ENSG00000079482|ENST00000355520|OPHN1;nc|ENSG00000079482|O60890-2|OPHN1;OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant	ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.76318359375	2	522.261456	1042.50836	0.81184	0.00042399	-1.431	-0.00074738	-0.6192	-0.00032339	522.2608759744347	29.956	0.16875	29.956	29.893	30.062	0					12	6	3	0	0	0	0.27249	1	9491	9491		52.937	8.8199	1	87010			28943	1624	19580	19652	29332	29332					-0.011194204534604069
NYSSAVQKF	9	Unmodified	_NYSSAVQKF_					0	0	0		ENSG00000079482|ENST00000355520|OPHN1;nc|ENSG00000079482|O60890-2|OPHN1;OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant	ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.26171875	2	522.261456	1042.50836	0.083138	4.342E-05	-0.91378	-0.00047723	-0.83064	-0.00043381	522.2616152690899	30.203	0.28979	30.203	30.076	30.366	0					13	7	2	0	0	0	0.023928	1	10870	10870		115.49	35.781	1	492400			28944	1624	19580	19652	29333	29333					-0.011194204534604069
NYSSAVQKF	9	Unmodified	_NYSSAVQKF_					0	0	0		ENSG00000079482|ENST00000355520|OPHN1;nc|ENSG00000079482|O60890-2|OPHN1;OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant	ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.261962890625	2	522.261456	1042.50836	-1.3065	-0.00068233	-0.41934	-0.000219	-1.7258	-0.00090133	522.2623832986328	29.994	0.20423	29.994	29.858	30.062	0					12	5	3	0	0	0	0.38666	1	10177	10177		42.864	2.2917	1	128070			28945	1624	19580	19652	29334	29334					-0.011194204534604069
NYSTVPQKQTL	11	Unmodified	_NYSTVPQKQTL_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	639.8382568359375	2	639.838059	1277.66157	-0.41352	-0.00026459	1.4758	0.00094426	1.0623	0.00067967	639.8388492857208	27.547	0.15968	27.547	27.49	27.649	0					5	3	2	0	0	0	0.41029	1	10006	10006		50.791	22.71	1	77130			28946	2059	19581	19653	29335	29335					0.033841498723404584
NYTKAMRLF	9	Unmodified	_NYTKAMRLF_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.302978515625	2	572.302601	1142.59065	3.3839	0.0019366	-2.9001	-0.0016597	0.48382	0.00027689	572.3010041059489	35.509	0.32222	35.509	35.398	35.721	0					9	6	2	0	0	0	0.076532	1	13729	13729		69.628	18.292	1	330700			28947	6903	19582	19654	29336	29336					0.02505778353815913
NYTLDAIETM	10	Unmodified	_NYTLDAIETM_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.7716674804688	2	585.770997	1169.52744	0.36193	0.00021201	-0.46376	-0.00027166	-0.10183	-5.9649E-05	585.7708815794414	23.748	0.16792	23.748	23.681	23.849	0					8	6	2	0	0	0	0.49411	1	6920	6920		45.972	5.1941	1	73531	+		28948	13191	19583	19655	29337	29337					-0.05054251944739008
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2960205078125	2	530.295299	1058.57605	1.7308	0.00091784	-0.39194	-0.00020784	1.3389	0.00071	530.2951215006091	46.3	0.18865	46.3	46.258	46.447	0					13	10	2	0	0	0	0.037569	1	17815	17815		101.6	52.159	1	154860			28949	5958	19584	19656	29338	29338					0.049100294773325004
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7969970703125	2	530.295299	1058.57605	1.6408	0.0008701	-0.92859	-0.00049243	0.71219	0.00037767	530.2949089904876	46.298	0.16432	46.298	46.215	46.38	0					11	7	2	0	0	0	0.048471	1	18513	18513		95.815	44.622	1	114810			28950	5958	19584	19656	29339	29339					0.049100294773325004
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2962036132812	2	530.295299	1058.57605	3.438	0.0018232	-2.3493	-0.0012458	1.0887	0.00057732	530.2940717860355	46.29	0.1853	46.29	46.21	46.395	0					20	8	3	0	0	0	0.0792	1	18509	18509		84.916	26.134	1	147560			28951	5958	19584	19656	29340	29340					0.049100294773325004
NYTNGSFGSNF	11	Unmodified	_NYTNGSFGSNF_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.2555541992188	2	604.25436	1206.49417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.66	1	42.66	42.16	43.16	0								0	0	0	0.017541	1	14042	14042		109.83	71.076	1				28952	763	19585	19657	29341	29341					-0.10082117672413915
NYTNGSFGSNF	11	Unmodified	_NYTNGSFGSNF_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.2537231445312	2	604.25436	1206.49417	0.69104	0.00041756	-0.54786	-0.00033105	0.14318	8.6516E-05	604.2539953470892	42.834	0.31039	42.834	42.736	43.047	0					37	15	3	0	0	0	0.0073817	1	16788	16788		126.66	86.086	1	597670			28953	763	19585	19657	29342	29342					-0.10082117672413915
NYTNGSFGSNF	11	Unmodified	_NYTNGSFGSNF_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.25439453125	2	604.25436	1206.49417	1.9114	0.001155	-1.5827	-0.00095637	0.32872	0.00019863	604.2531861749565	42.814	0.33559	42.814	42.699	43.035	0					23	10	3	0	0	0	7.7435E-06	1	17102	17102		180.66	114.86	1	452310			28954	763	19585	19657	29343	29343					-0.10082117672413915
NYVANTNVF	9	Unmodified	_NYVANTNVF_					0	0	0		nc|ENSG00000124126|Q8TCU6-2|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2540283203125	2	521.253631	1040.49271	1.6242	0.00084662	0.58713	0.00030605	2.2113	0.0011527	521.2538091530442	42.254	0.3185	42.254	42.065	42.383	0					18	8	3	0	0	0	0.18416	1	16865	16865		63.534	15.877	1	241200			28955	3345	19586	19658	29344	29344					-0.025917069705201357
NYVEHEMY	8	Unmodified	_NYVEHEMY_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7239990234375	2	542.723849	1083.43315	0.32164	0.00017456	0.083707	4.543E-05	0.40534	0.00021999	542.7240074730669	33.447	0.33221	33.447	33.327	33.659	0					22	8	4	0	0	0	0.66372	1	12360	12360		38.806	0	1	527730	+		28956	17402	19587	19659	29345	29345					-0.10523345976184828
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.8165283203125	2	597.81693	1193.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.653	1	30.653	30.153	31.153	0								0	0	0	0.14179	1	11480	11480		63.534	26.505	1				28957	6409	19588	19660	29346	29346					0.0302421925462113
NYVGPAKVI	9	Unmodified	_NYVGPAKVI_					0	0	0		NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7789306640625	2	480.779285	959.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.462	1	49.462	48.962	49.962	0								0	0	0	0.28996	1	19560	19560		37.159	0	1				28958	2574	19589	19661	29347	29347					0.06262661794187352
NYVKKFQSF	9	Unmodified	_NYVKKFQSF_					0	0	0		ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.8070678710938	2	580.808574	1159.60259	-0.028364	-1.6474E-05	-2.1533	-0.0012506	-2.1816	-0.0012671	581.3099760673887	30.389	0.4872	30.389	30.038	30.526	0					21	12	2	0	0	0	0.44593	1	10892	10892		37.812	2.1932	1	422570			28959	2579	19590	19662	29348	29348					0.029177183686670105
NYVKKFQSF	9	Unmodified	_NYVKKFQSF_					0	0	0		ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.80712890625	2	580.808574	1159.60259	3.2436	0.0018839	-3.7948	-0.0022041	-0.55125	-0.00032017	580.8064306986163	30.379	0.69924	30.379	29.963	30.663	0					31	14	3	0	0	0	0.078509	1	11152	11152		85.161	24.189	1	669090			28960	2579	19590	19662	29349	29349					0.029177183686670105
NYVMASFYK	9	Unmodified	_NYVMASFYK_					0	0	0		nc|ENSG00000157168|Q02297-12|NRG1;nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;nc|ENSG00000157168|Q02297-6|NRG1	nc|ENSG00000157168|Q02297-12|NRG1	nc|ENSG00000157168|Q02297-12|NRG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.7698974609375	2	561.76806	1121.52157	0.47131	0.00026477	1.3803	0.00077539	1.8516	0.0010402	561.7691768089411	11.573	0.13908	11.573	11.514	11.653	0					12	5	3	0	0	0	0.54267	1	2265	2265		27.882	0	1	210050			28961	11599	19591	19663	29350	29350					-0.034333056657260386
NYYLPMVE	8	Unmodified	_NYYLPMVE_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7403564453125	2	514.741511	1027.46847	-0.48995	-0.0002522	-1.3223	-0.00068065	-1.8123	-0.00093285	514.7407133593024	20.104	0.16686	20.104	20.045	20.212	0					5	3	2	0	0	0	0.70055	1	6476	6476		33.516	0	1	243850			28962	5574	19592	19664	29351	29351					-0.04416683448425829
PAAKKSAQL	9	Unmodified	_PAAKKSAQL_					0	0	0		ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1	ENSG00000065600|ENST00000261455|PACC1	ENSG00000065600|ENST00000261455|PACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7776794433594	2	457.276909	912.539266	-0.15	-6.8593E-05	-0.71881	-0.00032869	-0.86881	-0.00039729	457.27669311724236	21.892	0.31056	21.892	21.776	22.086	0					14	6	3	0	0	0	0.57706	1	7384	7384		24.203	3.7209	1	691990			28963	1375	19593	19665	29352	29352					0.07949777651424483
PAAPPAVVRAP	11	Unmodified	_PAAPPAVVRAP_					0	0	0		nc|ENSG00000168314|Q13875-2|MOBP;ENSG00000168314|ENST00000684792|MOBP;nc|ENSG00000168314|Q13875-4|MOBP	nc|ENSG00000168314|Q13875-2|MOBP	nc|ENSG00000168314|Q13875-2|MOBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.8769836425781	3	349.209948	1044.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.111	1	14.111	13.611	14.611	0								0	0	0	0.45674	1	3590	3590		14.086	2.9893	1				28964	6081	19594	19666	29353	29353					0.0874944195113585
PAAPRQPGR	9	Unmodified	_PAAPRQPGR_					0	0	0			REV__nc|ENSG00000176912|Q8TAI1|TYMSOS	REV__nc|ENSG00000176912|Q8TAI1|TYMSOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2710266113281	2	475.26995	948.525347	0.63683	0.00030267	1.2599	0.00059878	1.8967	0.00090145	475.2705558327146	31.311	0.2209	31.311	31.181	31.402	0					10	5	2	0	0	0	0.27781	1	11376	11376		52.299	2.2746	1	314040	+		28965	18343	19595	19667	29354	29354					0.04902544943001885
PAAPSLGFNV	10	Unmodified	_PAAPSLGFNV_					0	0	0			REV__ENSG00000139540|ENST00000454355|SLC39A5	REV__ENSG00000139540|ENST00000454355|SLC39A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.26318359375	2	486.761092	971.507631	-2.9123	-0.0014176	2.4789	0.0012066	-0.43343	-0.00021098	486.76232365452006	37.928	0.10513	37.928	37.871	37.976	0					7	4	2	0	0	0	0.61187	1	13564	13564		32.812	3.6629	1	60366	+		28966	15033	19596	19668	29355	29355					0.020737848974931694
PAARARGPPA	10	Unmodified	_PAARARGPPA_					0	0	0			REV__ENSG00000116017|ENST00000263620|ARID3A	REV__ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2767333984375	2	482.277775	962.540997	-0.46222	-0.00022292	-1.9999	-0.00096452	-2.4621	-0.0011874	482.2769277921046	27.313	0.1217	27.313	27.262	27.383	0					6	4	2	0	0	0	0.72334	1	8686	8686		18.324	0.8564	1	61878	+		28967	14131	19597	19669	29356	29356					0.058228314600341946
PAARPRGG	8	Unmodified	_PAARPRGG_					0	0	0			REV__ENST00000553338.1_1_14:76452171-76452399:+|nuORF	REV__ENST00000553338.1_1_14:76452171-76452399:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.22503662109375	2	391.225011	780.435469	-0.15605	-6.1052E-05	0.77266	0.00030229	0.61661	0.00024123	391.2252602014659	43.435	0.93853	43.435	43.238	44.176	0					83	56	2	0	0	0	0.79176	1	15107	15107		21.702	1.2205	1	84797	+		28968	20220	19598	19670	29357	29357					0.036469153344341976
PAARRRKK	8	Unmodified	_PAARRRKK_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000434096.1_1_2:58688403-58689123:-|nuORF;IK|p.M189Rfs*54|1|0.04|ENSG00000113141|chr5:140654559-140654560|-/AA|frameshift_variant	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.2183837890625	3	328.217548	981.630815	3.0015	0.00098515	-0.42475	-0.00013941	2.5768	0.00084574	328.217427691646	11.571	0.10957	11.571	11.533	11.642	0					8	3	3	0	0	0	0.8006	1	2275	2275		23.042	5.6775	1	814130			28969	2779	19599	19671	29358	29358					0.1392650585927413
PAASTIISK	9	Unmodified	_PAASTIISK_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.26300048828125	2	444.263468	886.512382	-0.066763	-2.966E-05	-0.56083	-0.00024916	-0.62759	-0.00027882	444.2630243421199	29.504	0.18287	29.504	29.418	29.6	0					9	4	3	0	0	0	0.14603	1	10553	10553		68.787	15.435	1	207110	+		28970	12155	19600	19672	29359	29359					0.06458669040250697
PACPVELTL	9	Unmodified	_PACPVELTL_					0	0	0		tr|U7SJ28|U7SJ28_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02070PE=4SV=1	tr|U7SJ28|U7SJ28_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02070PE=4SV=1	tr|U7SJ28|U7SJ28_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02070PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.75341796875	2	471.751879	941.489204	2.4688	0.0011646	0.85378	0.00040277	3.3225	0.0015674	471.75223446279693	23.063	0.26158	23.063	22.956	23.218	0					17	5	4	0	0	0	0.45358	1	7774	7774		37.159	1.5408	1	1867800			28971	22606	19601	19673	29360	29360					0.01611906931248086
PACWCGHV	8	Unmodified	_PACWCGHV_					0	0	0			REV__ENST00000596902.1_1_19:44005755-44005845:-|nuORF	REV__ENST00000596902.1_1_19:44005755-44005845:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.67938232421875	2	436.680733	871.346914	-2.6334	-0.00115	-0.39101	-0.00017075	-3.0244	-0.0013207	436.68061351897524	49.642	0.22871	49.642	49.5	49.728	0					23	13	3	0	0	0	0.79462	1	16329	16329		16.705	1.0632	1	142880	+		28972	20569	19602	19674	29361	29361					-0.09390584291907089
PADAARGVLW	10	Unmodified	_PADAARGVLW_					0	0	0			REV__ENST00000564318.1_1_16:75573894-75575375:-|nuORF	REV__ENST00000564318.1_1_16:75573894-75575375:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2843627929688	2	528.285266	1054.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.182	1	41.182	40.682	41.682	0								0	0	0	0.40446	1	15659	15659		29.15	0	1		+		28973	17512	19603	19675	29362	29362					0.0308827853737057
PADLSRPK	8	Unmodified	_PADLSRPK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.25335693359375	2	442.253434	882.492316	-0.33448	-0.00014792	0.10029	4.4353E-05	-0.23419	-0.00010357	442.2534863405905	21.814	0.69822	21.814	21.596	22.295	0					31	16	3	0	0	0	0.29212	1	7002	7002		85.161	26.379	1	349990			28974	1224	19604	19676	29363	29363					0.046369181002773985
PADLSRPK	8	Unmodified	_PADLSRPK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2537536621094	2	442.253434	882.492316	-1.1207	-0.00049563	1.0618	0.00046959	-0.058879	-2.604E-05	442.25402905689583	21.553	0.64033	21.553	21.316	21.956	0					28	19	2	0	0	0	0.58597	1	6185	6185		51.335	12.314	1	62683			28975	1224	19604	19676	29364	29364					0.046369181002773985
PADPTRAASI	10	Unmodified	_PADPTRAASI_					0	0	0		ENST00000337975.5_1_15:86303082-86303469:-|nuORF	ENST00000337975.5_1_15:86303082-86303469:-|nuORF	ENST00000337975.5_1_15:86303082-86303469:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7674865722656	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.901	1	25.901	25.401	26.401	0								0	0	0	0.4201	1	8077	8077		19.997	0	1				28976	8710	19605	19677	29365	29365					0.020399819208023473
PAFKWTGP	8	Unmodified	_PAFKWTGP_					0	0	0		ENSG00000129173|ENST00000250024|E2F8;E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	ENSG00000129173|ENST00000250024|E2F8	ENSG00000129173|ENST00000250024|E2F8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.23968505859375	2	452.239796	902.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.398	1	18.398	17.898	18.898	0								0	0	0	1.7419	1	5640	5640		47.916	10.887	1				28977	867	19606	19678	29366	29366					0.009904345598897635
PAGGVGGP	8	Unmodified	_PAGGVGGP_					0	0	0		SMARCD2|p.P96Hfs*16|1|0.36|ENSG00000108604|chr17:63837555-63837555|G/-|frameshift_variant;SMARCD2|p.P92Lfs*20|1|0.33|ENSG00000108604|chr17:63837567-63837567|G/-|frameshift_variant;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant;ENSG00000108604|ENST00000448276|SMARCD2	SMARCD2|p.P96Hfs*16|1|0.36|ENSG00000108604|chr17:63837555-63837555|G/-|frameshift_variant	SMARCD2|p.P96Hfs*16|1|0.36|ENSG00000108604|chr17:63837555-63837555|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	306.1607971191406	2	306.161014	610.307475	0.37196	0.00011388	-1.3592	-0.00041613	-0.98721	-0.00030225	306.16057057361536	23.23	0.087254	23.23	23.183	23.27	0					4	2	2	0	0	0	0.77013	1	6698	6698		24.504	7.799	1	55140			28978	2541	19607	19679	29367	29367					-0.013266449794855362
PAGGVGGP	8	Unmodified	_PAGGVGGP_					0	0	0		SMARCD2|p.P96Hfs*16|1|0.36|ENSG00000108604|chr17:63837555-63837555|G/-|frameshift_variant;SMARCD2|p.P92Lfs*20|1|0.33|ENSG00000108604|chr17:63837567-63837567|G/-|frameshift_variant;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant;ENSG00000108604|ENST00000448276|SMARCD2	SMARCD2|p.P96Hfs*16|1|0.36|ENSG00000108604|chr17:63837555-63837555|G/-|frameshift_variant	SMARCD2|p.P96Hfs*16|1|0.36|ENSG00000108604|chr17:63837555-63837555|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	306.160888671875	2	306.161014	610.307475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.55	1	23.55	23.05	24.05	0								0	0	0	1.7419	1	8129	8129		33.493	8.989	1				28979	2541	19607	19679	29368	29368					-0.013266449794855362
PAGNRGARKAS	11	Unmodified	_PAGNRGARKAS_					0	0	0		PARP15|p.F199Hfs*7|1|0.16|ENSG00000173200|chr3:122613089-122613092|TCTT/-|frameshift_variant;ENSG00000173200|ENST00000464300|PARP15	PARP15|p.F199Hfs*7|1|0.16|ENSG00000173200|chr3:122613089-122613092|TCTT/-|frameshift_variant	PARP15|p.F199Hfs*7|1|0.16|ENSG00000173200|chr3:122613089-122613092|TCTT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.2022399902344	3	362.203856	1083.58974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.691	1	26.691	26.191	27.191	0								0	0	0	0.45674	1	8631	8631		22.562	0.87584	1				28980	6412	19608	19680	29369	29369					0.05128700029126776
PAGPSHVI	8	Unmodified	_PAGPSHVI_					0	0	0			REV__FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant	REV__FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.2162780761719	2	389.216321	776.418088	-2.1917	-0.00085304	2.075	0.00080763	-0.11667	-4.5411E-05	389.2170856526973	27.531	0.13297	27.531	27.443	27.576	0					5	3	2	0	0	0	0.61433	1	9030	9030		46.766	4.292	1	91245	+		28981	15285	19609	19681	29370	29370					0.020935750087687666
PAGRVTPVS	9	Unmodified	_PAGRVTPVS_					0	0	0		ENST00000521249.1_1_14:102697414-102697822:-|nuORF	ENST00000521249.1_1_14:102697414-102697822:-|nuORF	ENST00000521249.1_1_14:102697414-102697822:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.2528381347656	2	442.253434	882.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.558	1	21.558	21.058	22.058	0								0	0	0	0.28996	1	5953	5953		37.159	4.3467	1				28982	10310	19610	19682	29371	29371					0.04636918100288767
PAGTRLPRK	9	Unmodified	_PAGTRLPRK_					0	0	0		ENSG00000130751|ENST00000602212|NPAS1	ENSG00000130751|ENST00000602212|NPAS1	ENSG00000130751|ENST00000602212|NPAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.81121826171875	2	498.309075	994.603597	0.22783	0.00011353	0.52347	0.00026085	0.7513	0.00037438	498.3095066425066	13.543	0.086055	13.543	13.496	13.582	0					10	4	3	0	0	0	0.44593	1	2665	2665		23.042	1.0826	1	233230			28983	3668	19611	19683	29372	29372					0.1060797752822964
PAHLRVRD	8	Unmodified	_PAHLRVRD_					0	0	0			REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2795715332031	2	482.277775	962.540997	3.4733	0.0016751	-0.074785	-3.6067E-05	3.3985	0.001639	482.2776566969996	34.635	0.16285	34.635	34.573	34.736	0					12	7	2	0	0	0	0.65276	1	11684	11684		40.573	40.573	1	47579	+		28984	19259	19612	19684	29373	29373					0.058228314600341946
PAHPAATL	8	Unmodified	_PAHPAATL_					0	0	0		ENST00000430767.8_1_17:75210112-75210223:+|nuORF	ENST00000430767.8_1_17:75210112-75210223:+|nuORF	ENST00000430767.8_1_17:75210112-75210223:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.2163391113281	2	389.216321	776.418088	0.2375	9.2441E-05	-0.14468	-5.631E-05	0.09283	3.6131E-05	389.21634153470393	27.514	0.21838	27.514	27.427	27.645	0					8	5	2	0	0	0	0.74117	1	9020	9020		28.254	0	1	121720			28985	9493	19613	19685	29374	29374					0.020935750087687666
PAKHVLKE	8	Unmodified	_PAKHVLKE_					0	0	0			REV__COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant	REV__COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.27935791015625	2	461.279452	920.544351	-0.44617	-0.00020581	0.24135	0.00011133	-0.20482	-9.4478E-05	461.27948762419385	32.056	0.26719	32.056	31.946	32.213	0					16	11	2	0	0	0	0.77246	1	10322	10322		24.203	3.7209	1	59156	+		28986	12558	19614	19686	29375	29375					0.08090081514046688
PALAHGRA	8	Unmodified	_PALAHGRA_					0	0	0		SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant	SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant	SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.7273254394531	2	396.727387	791.44022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.761	1	13.761	13.261	14.261	0								0	0	0	1.7419	1	2732	2732		21.702	0	1				28987	22483	19615	19687	29376	29376					0.03615799477177006
PALGAPAAGDL	11	Unmodified	_PALGAPAAGDL_					0	0	0			REV__ENST00000006053.6_2_16:57418248-57418452:+|nuORF	REV__ENST00000006053.6_2_16:57418248-57418452:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7583923339844	2	476.758549	951.502546	0.37153	0.00017713	-0.9656	-0.00046036	-0.59407	-0.00028323	476.7582294697169	38.76	0.2199	38.76	38.687	38.906	0					12	8	2	0	0	0	0.42875	1	14739	14739		49.442	3.4896	1	138980	+		28988	17857	19616	19688	29377	29377					0.024854810348415413
PALHATAP	8	Unmodified	_PALHATAP_					0	0	0			REV__ENST00000545910.1_1_19:45641863-45643897:+|nuORF	REV__ENST00000545910.1_1_19:45641863-45643897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.2164001464844	2	389.216321	776.418088	0.8683	0.00033796	-0.57711	-0.00022462	0.29118	0.00011333	389.2160871908005	27.711	0.35329	27.711	27.583	27.936	0					17	8	3	0	0	0	0.6282	1	9700	9700		44.531	0	1	859280	+		28989	20164	19617	19689	29378	29378					0.02093575008757398
PALHATAP	8	Unmodified	_PALHATAP_					0	0	0			REV__ENST00000545910.1_1_19:45641863-45643897:+|nuORF	REV__ENST00000545910.1_1_19:45641863-45643897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.2160339355469	2	389.216321	776.418088	0.50778	0.00019764	-0.86509	-0.00033671	-0.35731	-0.00013907	389.2160109782093	27.654	0.36694	27.654	27.543	27.91	0					12	7	2	0	0	0	0.68754	1	9932	9932		35.201	0	1	1203000	+		28990	20164	19617	19689	29379	29379					0.02093575008757398
PALHIGSIS	9	Unmodified	_PALHIGSIS_					0	0	0		ENSG00000120328|ENST00000239450|PCDHB12;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;PCDHB6|p.V471I|1|0.4|ENSG00000113211|chr5:141151668-141151668|G/A|missense_variant	ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000120328|ENST00000239450|PCDHB12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.7554931640625	2	447.75581	893.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.306	1	34.306	33.806	34.806	0								0	0	0	0.20652	1	12131	12131		50.025	7.6284	1				28991	3167	19618	19690	29380	29380					0.04605802243054313
PALPGLKLS	9	Unmodified	_PALPGLKLS_					0	0	0		TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant	TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2839050292969	2	448.284203	894.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.835	1	32.835	32.335	33.335	0								0	0	0	0.28996	1	12513	12513		37.159	2.9866	1				28992	7931	19619	19691	29381	29381					0.10235849799562402
PALVLTSQK	9	Unmodified	_PALVLTSQK_					0	0	0		ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3;nc|ENSG00000213901|Q6PIS1-2|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.27130126953125	2	478.792392	955.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.778	1	23.778	23.278	24.278	0								0	0	0	0.34845	1	7312	7312		25.574	0.12388	1				28993	7799	19620	19692	29382	29382					0.09066930965661868
PANFHKNEREG	11	Unmodified	_PANFHKNEREG_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	649.815673828125	2	649.81545	1297.61635	2.0601	0.0013387	0.23613	0.00015344	2.2963	0.0014921	649.8157665429262	40.255	0.14794	40.255	40.197	40.345	0					10	6	2	0	0	0	0.70609	1	15874	15874		27.047	0	1	36841	+		28994	21862	19621	19693	29383	29383					-0.020556558701855465
PAPAANPPA	9	Unmodified	_PAPAANPPA_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	403.21392822265625	2	403.213778	804.413003	-1.352	-0.00054514	1.2597	0.00050791	-0.092334	-3.723E-05	403.2140686264506	26.214	0.17572	26.214	26.148	26.323	0					8	5	2	0	0	0	0.55282	1	8221	8221		26.796	6.3143	1	85289			28995	3536	19622	19694	29384	29384					0.0029727114613251615
PAPAPAPAPD	10	Unmodified	_PAPAPAPAPD_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.23138427734375	2	452.232168	902.449782	-0.11418	-5.1636E-05	-0.85483	-0.00038658	-0.96901	-0.00043822	452.23171113209776	26.887	0.16666	26.887	26.778	26.944	0					6	3	2	0	0	0	0.57532	1	9687	9687		37.159	5.6293	1	178530			28996	3608	19623	19695	29385	29385					-0.0053447702796347585
PAPDAAKK	8	Unmodified	_PAPDAAKK_					0	0	0			REV__ENST00000422983.1_1_1:53038862-53039237:+|nuORF	REV__ENST00000422983.1_1_1:53038862-53039237:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.2293395996094	2	399.229428	796.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.46	1	12.46	11.96	12.96	0								0	0	0	1.7419	1	2809	2809		79.451	0	1		+		28997	19093	19624	19696	29386	29386					0.037938441802339185
PAPGRPVDPGP	11	Unmodified	_PAPGRPVDPGP_					0	0	0		ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.8575134277344	3	353.857574	1058.55089	0.49156	0.00017394	-0.69097	-0.00024451	-0.19941	-7.0563E-05	353.85730961132987	26.404	0.31423	26.404	26.314	26.628	0					12	7	2	0	0	0	0.65797	1	9111	9111		31.634	0.10446	1	668800			28998	8483	19625	19697	29387	29387					0.023959746747550525
PAPHRKRQ	8	Unmodified	_PAPHRKRQ_					0	0	0			REV__ENST00000429149.6_1_16:70680464-70680746:+|nuORF	REV__ENST00000429149.6_1_16:70680464-70680746:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.5308532714844	3	330.529903	988.567881	1.6635	0.00054985	1.2605	0.00041662	2.924	0.00096647	330.5302526532902	18.76	0.29464	18.76	18.702	18.997	0					12	6	2	0	0	0	0.6282	1	5692	5692		37.159	4.3467	1	1005500	+		28999	19144	19626	19698	29388	29388					0.07313940071219349
PAPPFSVPQAI	11	Unmodified	_PAPPFSVPQAI_					0	0	0			REV__KRTAP4-6|p.Q49Sfs*162|1|0.33|ENSG00000198090|chr17:41140343-41140343|G/-|frameshift_variant	REV__KRTAP4-6|p.Q49Sfs*162|1|0.33|ENSG00000198090|chr17:41140343-41140343|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.3125	2	562.310949	1122.60735	0.1302	7.3212E-05	2.7294	0.0015348	2.8596	0.001608	562.3126571693934	32.247	0.25076	32.247	32.139	32.39	0					20	11	3	0	0	0	0.60833	1	10731	10731		14.137	0	1	94983	+		29000	20801	19627	19699	29389	29389					0.05094602511417179
PAPRHVGK	8	Unmodified	_PAPRHVGK_					0	0	0			REV__ENST00000498439.1_1_16:846687-847972:+|nuORF	REV__ENST00000498439.1_1_16:846687-847972:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.2550048828125	2	431.256311	860.49807	-0.2509	-0.0001082	-1.7486	-0.0007541	-1.9995	-0.00086231	431.2554928147034	26.642	0.10556	26.642	26.581	26.687	0					6	3	2	0	0	0	0.76283	1	8122	8122		25.45	1.2474	1	55895	+		29001	14493	19628	19700	29390	29390					0.06224061402610914
PAPRHVGK	8	Unmodified	_PAPRHVGK_					0	0	0			REV__ENST00000498439.1_1_16:846687-847972:+|nuORF	REV__ENST00000498439.1_1_16:846687-847972:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.2554626464844	2	431.256311	860.49807	-2.8774	-0.0012409	0.91007	0.00039247	-1.9673	-0.0008484	431.25667246558396	26.714	0.32128	26.714	26.582	26.903	0					14	7	3	0	0	0	0.60719	1	8634	8634		47.916	47.916	1	520430	+		29002	14493	19628	19700	29391	29391					0.06224061402610914
PAPRLPAEF	9	Unmodified	_PAPRLPAEF_					0	0	0		ENST00000588238.1_1_19:4445497-4445788:-|nuORF	ENST00000588238.1_1_19:4445497-4445788:-|nuORF	ENST00000588238.1_1_19:4445497-4445788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.5210266113281	3	333.187032	996.539266	0.53997	0.00017991	-1.3414	-0.00044692	-0.80138	-0.00026701	333.18708531661844	26.324	0.25863	26.324	26.151	26.41	0					11	5	3	0	0	0	0.5654	1	9409	9409		25.574	0	1	148170			29003	10921	19629	19701	29392	29392					0.040857776514030775
PAPVTIAVK	9	Unmodified	_PAPVTIAVK_					0	0	0			REV__nc|ENSG00000165458|O15357-2|INPPL1	REV__nc|ENSG00000165458|O15357-2|INPPL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2850036621094	2	448.284203	894.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.898	1	32.898	32.398	33.398	0								0	0	0	0.28164	1	12121	12121		38.806	3.6054	1		+		29004	16042	19630	19702	29393	29393					0.10235849799562402
PAQLPSEPSW	10	Unmodified	_PAQLPSEPSW_					0	0	0			REV__ENSG00000130309|ENST00000252599|COLGALT1	REV__ENSG00000130309|ENST00000252599|COLGALT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.2747192382812	2	556.274564	1110.53457	0.56937	0.00031672	0.0025528	1.42E-06	0.57192	0.00031815	556.2744956689437	44.972	0.39988	44.972	44.868	45.268	0					65	24	4	0	0	0	0.70967	1	16862	16862		15.642	0	1	1213000	+		29005	14572	19631	19703	29394	29394					-0.016271512820139833
PARKGAKG	8	Unmodified	_PARKGAKG_					0	0	0			REV__ENSG00000079841|ENST00000521978|RIMS1	REV__ENSG00000079841|ENST00000521978|RIMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.7433166503906	2	392.743037	783.471521	0.12656	4.9704E-05	-0.68184	-0.00026779	-0.55528	-0.00021808	392.74279149684025	12.407	0.18464	12.407	12.315	12.499	0					7	4	2	0	0	0	0.78118	1	2771	2771		1.619	0	1	110120	+		29006	13288	19632	19704	29395	29395					0.07112372511278409
PARKGAKG	8	Unmodified	_PARKGAKG_					0	0	0			REV__ENSG00000079841|ENST00000521978|RIMS1	REV__ENSG00000079841|ENST00000521978|RIMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.7434387207031	2	392.743037	783.471521	-0.66923	-0.00026284	1.2145	0.00047698	0.54525	0.00021414	392.74351539189223	12.394	0.3332	12.394	12.307	12.64	0					13	9	3	0	0	0	0.78118	1	2617	2617		1.619	0	1	218370	+		29007	13288	19632	19704	29396	29396					0.07112372511278409
PARPHVQG	8	Unmodified	_PARPHVQG_					0	0	0			REV__ENSG00000232125|ENST00000452335|DYTN	REV__ENSG00000232125|ENST00000452335|DYTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.2375793457031	2	431.238119	860.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.267	1	19.267	18.767	19.767	0								0	0	0	1.7419	1	5186	5186		42.474	0	1		+		29008	17648	19633	19705	29397	29397					0.025871845058986764
PARQAAAQRCP	11	Unmodified	_PARQAAAQRCP_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	584.8052978515625	2	584.803831	1167.59311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.984	1	36.984	36.484	37.484	0								0	0	0	0.4303	1	12120	12120		30.318	1.1477	1				29009	2020	19634	19706	29398	29398					0.016016268114753984
PARSALPEPE	10	Unmodified	_PARSALPEPE_					0	0	0		ENST00000369808.7_2_X:153633410-153636936:-|nuORF	ENST00000369808.7_2_X:153633410-153636936:-|nuORF	ENST00000369808.7_2_X:153633410-153636936:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2813720703125	2	533.780013	1065.54547	0.15165	8.0948E-05	0.19627	0.00010476	0.34792	0.00018571	534.2815502909532	31.2	0.34393	31.2	31.069	31.413	0					11	8	2	0	0	0	0.56931	1	11363	11363		37.812	1.3648	1	672350			29010	8947	19635	19707	29399	29399					0.015322510922715082
PARSYGGVAV	10	Unmodified	_PARSYGGVAV_					0	0	0			REV__ENST00000489739.1_1_9:139685858-139686514:+|nuORF	REV__ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.762939453125	2	488.764166	975.513779	-0.025023	-1.223E-05	1.1727	0.00057316	1.1477	0.00056093	488.76341049216956	29.893	0.21336	29.893	29.81	30.024	0					12	8	2	0	0	0	0.6796	1	9456	9456		24.519	2.5593	1	60333	+		29011	19703	19636	19708	29400	29400					0.02504303129001073
PASAPPSA	8	Unmodified	_PASAPPSA_					0	0	0			REV__ENST00000571245.5_1_17:3831639-3833719:-|nuORF	REV__ENST00000571245.5_1_17:3831639-3833719:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.1780700683594	2	349.179404	696.344254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.501	1	45.501	45.001	46.001	0								0	0	0	1.7419	1	18225	18225		25.45	0	1		+		29012	20379	19637	19709	29401	29401					-0.01606393153576846
PASFQRCGQ	9	Unmodified	_PASFQRCGQ_					0	0	0			REV__TAP2|p.H661Qfs*41|1|0.24|ENSG00000204267|chr6:32828984-32828984|G/-|frameshift_variant	REV__TAP2|p.H661Qfs*41|1|0.24|ENSG00000204267|chr6:32828984-32828984|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2319030761719	2	497.232176	992.449799	2.9003	0.0014421	-3.6588	-0.0018193	-0.75853	-0.00037716	497.2302197584865	11.893	0.29438	11.893	11.797	12.091	0					18	8	3	0	0	0	0.43426	1	2400	2400		38.806	1.647	1	2447400	+		29013	21621	19638	19710	29402	29402					-0.04672800299601931
PASHLPVG	8	Unmodified	_PASHLPVG_					0	0	0		nc|ENSG00000148541|Q8NE31-3|FAM13C;nc|ENSG00000148541|Q8NE31-5|FAM13C;nc|ENSG00000148541|Q8NE31-4|FAM13C;ENSG00000148541|ENST00000618804|FAM13C	nc|ENSG00000148541|Q8NE31-3|FAM13C	nc|ENSG00000148541|Q8NE31-3|FAM13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.21649169921875	2	389.216321	776.418088	-0.15212	-5.9207E-05	0.54612	0.00021256	0.394	0.00015335	389.2165298383495	27.54	0.1742	27.54	27.414	27.588	0					6	4	2	0	0	0	0.72892	1	9015	9015		29.842	0	1	178140			29014	4839	19639	19711	29403	29403					0.020935750087687666
PASVIGGFLLL	11	Unmodified	_PASVIGGFLLL_					0	0	0		tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.8886413574219	3	362.890104	1085.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.252	1	18.252	17.752	18.752	0								0	0	0	0.45344	1	4727	4727		25.126	0.6068	1				29015	22626	19640	19712	29404	29404					0.10908363550902322
PATAHPAL	8	Unmodified	_PATAHPAL_					0	0	0		ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	389.2160949707031	2	389.216321	776.418088	0.55826	0.00021728	-0.42591	-0.00016577	0.13234	5.151E-05	389.2160787136127	27.448	0.19893	27.448	27.372	27.571	0					9	6	2	0	0	0	0.68754	1	8449	8449		35.201	6.9464	1	121680			29016	10821	19641	19713	29405	29405					0.020935750087460292
PATAHPAL	8	Unmodified	_PATAHPAL_					0	0	0		ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.21630859375	2	389.216321	776.418088	0.23275	9.059E-05	-0.099894	-3.888E-05	0.13285	5.1709E-05	389.2162874326408	27.704	0.31324	27.704	27.601	27.915	0					10	6	2	0	0	0	0.70055	1	10078	10078		33.516	5.2613	1	1003300			29017	10821	19641	19713	29406	29406					0.020935750087460292
PATAHPAL	8	Unmodified	_PATAHPAL_					0	0	0		ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.21624755859375	2	389.216321	776.418088	-0.69813	-0.00027172	0.62184	0.00024203	-0.076291	-2.9694E-05	389.21653093900403	27.67	0.36844	27.67	27.51	27.878	0					15	7	3	0	0	0	0.57802	1	9917	9917		52.299	5.5327	1	1510400			29018	10821	19641	19713	29407	29407					0.020935750087460292
PATRTAPR	8	Unmodified	_PATRTAPR_					0	0	0		ENST00000218230.5_1_X:48689512-48689653:-|nuORF	ENST00000218230.5_1_X:48689512-48689653:-|nuORF	ENST00000218230.5_1_X:48689512-48689653:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2503356933594	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.58	1	46.58	46.08	47.08	0								0	0	0	1.7419	1	17191	17191		20.482	0	1				29019	8168	19642	19714	29408	29408					0.048394536773685104
PATVPSVPI	9	Unmodified	_PATVPSVPI_					0	0	0		EEF1A2|p.F190S|1|0.12|ENSG00000101210|chr20:63494857-63494857|A/G|missense_variant	EEF1A2|p.F190S|1|0.12|ENSG00000101210|chr20:63494857-63494857|A/G|missense_variant	EEF1A2|p.F190S|1|0.12|ENSG00000101210|chr20:63494857-63494857|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.7608642578125	2	440.760561	879.506569	-0.32477	-0.00014315	1.4719	0.00064876	1.1471	0.00050561	440.7610811333766	41.168	0.099876	41.168	41.085	41.185	0					5	3	2	0	0	0	0.45358	1	16187	16187		37.159	0	1	53537			29020	883	19643	19715	29409	29409					0.06199570528565346
PAVHVQLSY	9	Unmodified	_PAVHVQLSY_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2759094238281	2	507.274367	1012.53418	0.34695	0.000176	0.92146	0.00046743	1.2684	0.00064343	507.27475631630193	35.174	0.14547	35.174	35.064	35.209	0					8	4	2	0	0	0	0.1115	1	12502	12502		76.774	5.4784	1	60612	+		29021	15181	19644	19716	29410	29410					0.028414737888056152
PAVNPWDVL	9	Unmodified	_PAVNPWDVL_					0	0	0		ENSG00000146360|ENST00000275169|GPR6;nc|ENSG00000146360|P46095-2|GPR6	ENSG00000146360|ENST00000275169|GPR6	ENSG00000146360|ENST00000275169|GPR6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7726745605469	2	505.768917	1009.52328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.021	1	12.021	11.521	12.521	0								0	0	0	0.28996	1	2460	2460		37.159	0.84147	1				29022	4727	19645	19717	29411	29411					0.01890071414504746
PAVSPLLP	8	Unmodified	_PAVSPLLP_					0	0	0		ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1;ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	265.1645812988281	3	265.165457	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.492	1	48.492	47.992	48.992	0								0	0	0	1.7419	1	18363	18363		12.959	0	1				29023	22	19646	19718	29412	29412					0.07000202845415515
PAVSSLTAIA	10	Unmodified	_PAVSSLTAIA_					0	0	0			REV__ENST00000451029.5_1_7:89905415-89916830:+|nuORF	REV__ENST00000451029.5_1_7:89905415-89916830:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2687683105469	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.548	1	27.548	27.048	28.048	0								0	0	0	0.37816	1	8789	8789		37.159	8.0096	1		+		29024	12444	19647	19719	29413	29413					0.05582651694635388
PAWPPPGLAP	10	Unmodified	_PAWPPPGLAP_					0	0	0		nc|ENSG00000132768|Q9BQC3-3|DPH2;ENSG00000132768|ENST00000255108|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2627258300781	2	501.774003	1001.53345	0.043233	2.1693E-05	-1.2697	-0.00063708	-1.2264	-0.00061539	501.77357207341	19.438	0.66003	19.438	18.883	19.543	0					50	13	5	0	0	0	0.6796	1	6036	6036		12.959	0	1	15192000			29025	3815	19648	19720	29414	29414					0.03274679139735781
PAWTFDIN	8	Unmodified	_PAWTFDIN_					0	0	0		FAM171B|p.M296I|1|0.37|ENSG00000144369|chr2:186751297-186751297|G/T|missense_variant	FAM171B|p.M296I|1|0.37|ENSG00000144369|chr2:186751297-186751297|G/T|missense_variant	FAM171B|p.M296I|1|0.37|ENSG00000144369|chr2:186751297-186751297|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2309265136719	2	482.232168	962.449782	-0.10344	-4.9884E-05	-0.52355	-0.00025247	-0.62699	-0.00030236	482.2319198202222	34.998	0.19043	34.998	34.899	35.089	0					6	5	2	0	0	0	0.65276	1	13545	13545		40.573	3.5441	1	40734			29026	11127	19649	19721	29415	29415					-0.0329447702795278
PAYQNLSQK	9	Unmodified	_PAYQNLSQK_					0	0	0		ENSG00000228075|ENST00000585477|BOD1L2	ENSG00000228075|ENST00000585477|BOD1L2	ENSG00000228075|ENST00000585477|BOD1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.185546875	3	350.185579	1047.53491	-0.82242	-0.000288	0.59927	0.00020986	-0.22314	-7.8142E-05	350.18578100344564	18.096	0.12983	18.096	18.026	18.156	0					12	4	4	0	0	0	0.24095	1	4665	4665		54.722	4.6888	1	680660			29027	7884	19650	19722	29416	29416					0.013042684378433478
PCACHLLGGAL	11	Carbamidomethyl (C)	_PCAC(Carbamidomethyl (C))HLLGGAL_	PC(0.005)AC(0.995)HLLGGAL		PC(-23)AC(23)HLLGGAL		0	1	0		ENST00000594013.5_1_19:44303920-44304121:-|nuORF	ENST00000594013.5_1_19:44303920-44304121:-|nuORF	ENST00000594013.5_1_19:44303920-44304121:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2745971679688	2	556.272986	1110.53142	3.5304	0.0019639	-0.0067422	-3.7505E-06	3.5237	0.0019601	556.2729153212792	44.881	0.63538	44.881	44.757	45.392	0					78	27	4	0	0	0	0.55011	1	18092	18092		40.573	6.651	2	4242100			29028	10988	19651	19723	29417	29417	441				-0.019424409320208724
PCAESKVLSL	10	Unmodified	_PCAESKVLSL_					0	0	0			REV__ENST00000448287.5_1_21:45287155-45323885:+|nuORF	REV__ENST00000448287.5_1_21:45287155-45323885:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7783813476562	2	523.781167	1045.54778	0.090584	4.7446E-05	-3.4513	-0.0018077	-3.3607	-0.0017603	523.7810052238127	32.558	1.0545	32.558	31.811	32.865	0					46	25	4	0	0	0	0.28036	1	12021	12021		69.628	3.1983	1	759100	+		29029	19296	19652	19724	29418	29418					0.026829635057538326
PCAPPPLALA	10	Unmodified	_PCAPPPLALA_					0	0	0		ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2632751464844	2	475.262413	948.510274	0.63784	0.00030314	1.5481	0.00073577	2.186	0.0010389	475.2632185358417	22.667	0.13921	22.667	22.616	22.756	0					5	3	2	0	0	0	0.50739	1	7406	7406		44.531	1.6668	1	134190			29030	3343	19653	19725	29419	29419					0.0339591703076394
PCAQAVEQK	9	Unmodified	_PCAQAVEQK_					0	0	0			REV__ENST00000544798.2_1_12:124408671-124428876:-|nuORF	REV__ENST00000544798.2_1_12:124408671-124428876:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2416076660156	2	487.242209	972.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.479	1	19.479	18.979	19.979	0								0	0	0	0.2591	1	6028	6028		42.396	1.618	1		+		29031	20158	19654	19726	29420	29420					-0.017470493596420056
PCAQLPFNLW	10	Unmodified	_PCAQLPFNLW_					0	0	0			REV__ENST00000480537.5_1_2:220144555-220146923:+|nuORF	REV__ENST00000480537.5_1_2:220144555-220146923:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.79736328125	2	594.797152	1187.57975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.449	1	11.449	10.949	11.949	0								0	0	0	0.4201	1	2227	2227		10.265	1.4429	1		+		29032	19591	19655	19727	29421	29421					-0.006536240204468413
PCARQGGL	8	Unmodified	_PCARQGGL_					0	0	0		ENST00000295087.12_1_2:152684749-152684917:-|nuORF	ENST00000295087.12_1_2:152684749-152684917:-|nuORF	ENST00000295087.12_1_2:152684749-152684917:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.2047424316406	2	401.20543	800.396307	0.05935	2.3811E-05	-1.5547	-0.00062375	-1.4953	-0.00059994	401.204534256492	34.401	0.32443	34.401	34.311	34.635	0					16	8	3	0	0	0	0.79293	1	13245	13245		15.636	0.97212	1	224430			29033	8448	19656	19728	29422	29422					-0.01187553011448017
PCASVKCSVL	10	Unmodified	_PCASVKCSVL_					0	0	0			REV__ADAMTS16|p.P921S|1|0.35|ENSG00000145536|chr5:5262755-5262755|C/T|missense_variant	REV__ADAMTS16|p.P921S|1|0.35|ENSG00000145536|chr5:5262755-5262755|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.75604248046875	2	503.756638	1005.49872	-2.032	-0.0010237	1.0919	0.00055007	-0.94011	-0.00047359	503.7571145356223	23.511	0.51515	23.511	23.373	23.888	0					25	12	3	0	0	0	0.11278	1	7173	7173		93.195	8.2799	1	2084700	+		29034	12071	19657	19729	29423	29423					-0.0038064805485191755
PCAWEHGL	8	Unmodified	_PCAWEHGL_					0	0	0			REV__ENST00000401607.6_1_20:34214165-34218368:-|nuORF	REV__ENST00000401607.6_1_20:34214165-34218368:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.70611572265625	2	456.705263	911.395972	2.4888	0.0011366	-0.43988	-0.0002009	2.0489	0.00093574	456.70503295210455	20.867	0.26602	20.867	20.759	21.025	0					11	5	3	0	0	0	0.75243	1	6715	6715		26.796	26.796	1	642740	+		29035	18951	19658	19730	29424	29424					-0.06326972731301339
PCCQKKLR	8	Unmodified	_PCCQKKLR_					0	0	0		UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.26409912109375	2	488.264964	974.515376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.172	1	17.172	16.672	17.672	0								0	0	0	1.7419	1	4253	4253		35.201	1.0282	1				29036	23086	19659	19731	29425	29425					0.027098976217416748
PCCTTMTWIRS	11	Carbamidomethyl (C)	_PCC(Carbamidomethyl (C))TTMTWIRS_	PC(0.16)C(0.84)TTMTWIRS		PC(-7.2)C(7.2)TTMTWIRS		0	1	0			REV__CIB4|p.E150Pfs*29|1|0.13|ENSG00000157884|chr2:26582904-26582905|-/GCTTTGGG|frameshift_variant	REV__CIB4|p.E150Pfs*29|1|0.13|ENSG00000157884|chr2:26582904-26582905|-/GCTTTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.5357360839844	3	452.535009	1354.5832	0.67686	0.0003063	0.72407	0.00032767	1.4009	0.00063397	452.53541704435446	18.134	0.49756	18.134	17.855	18.353	0					22	11	4	0	0	0	0.4771	1	5240	5240		45.908	6.035	2	1389400	+		29037	12500	19660	19732	29426	29426	493				-0.07991065300439004
PCCVIAVL	8	Unmodified	_PCCVIAVL_					0	0	0			REV__ENSG00000169618|ENST00000303786|PROKR1	REV__ENSG00000169618|ENST00000303786|PROKR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.2191162109375	2	409.21916	816.423767	-0.51371	-0.00021022	0.98661	0.00040374	0.4729	0.00019352	409.21930379550685	24.431	0.21756	24.431	24.33	24.547	0					9	4	3	0	0	0	0.70073	1	8446	8446		33.493	2.9893	1	108190	+		29038	16324	19661	19733	29427	29427					0.008212142045636028
PCEGFFFFF	9	Unmodified	_PCEGFFFFF_					0	0	0			REV__ENST00000239446.5_1_5:140572114-140572231:+|nuORF	REV__ENST00000239446.5_1_5:140572114-140572231:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.7470092773438	2	570.746596	1139.47864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.944	1	13.944	13.444	14.444	0								0	0	0	0.36609	1	3510	3510		13.775	0	1		+		29039	17926	19662	19734	29428	29428					-0.08552075723173402
PCERTDIR	8	Unmodified	_PCERTDIR_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.24542236328125	2	495.245283	988.476014	-0.064253	-3.1821E-05	0.39701	0.00019662	0.33276	0.0001648	495.2453542848414	38.486	0.18258	38.486	38.418	38.6	0					16	10	2	0	0	0	0.73426	1	12541	12541		29.15	0.89528	1	103060			29040	148	19663	19735	29429	29429					-0.018685311281274153
PCFPCHKI	8	Unmodified	_PCFPCHKI_					0	0	0			REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7261962890625	2	472.727684	943.440814	-0.52851	-0.00024984	-2.8803	-0.0013616	-3.4088	-0.0016115	472.7262811643301	31.437	0.14441	31.437	31.342	31.487	0					5	3	2	0	0	0	0.68754	1	10839	10839		35.201	3.2459	1	45978	+		29041	13727	19664	19736	29430	29430					-0.03316865189640339
PCGAPLARKSP	11	Unmodified	_PCGAPLARKSP_					0	0	0		ENST00000354992.6_1_22:34316075-34316387:-|nuORF	ENST00000354992.6_1_22:34316075-34316387:-|nuORF	ENST00000354992.6_1_22:34316075-34316387:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8037719726562	2	548.800226	1095.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.492	1	22.492	21.992	22.992	0								0	0	0	0.058193	1	7488	7488		84.916	12.672	1				29042	8790	19665	19737	29431	29431					0.04192894211064413
PCGASQSMTLK	11	Unmodified	_PCGASQSMTLK_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.7681274414062	2	561.767734	1121.52091	0.46907	0.00026351	-0.5429	-0.00030498	-0.073831	-4.1476E-05	561.767786023218	24.087	0.8369	24.087	23.904	24.741	0					68	19	6	0	0	0	0.27467	1	8038	8038		65.465	3.358	1	8377500			29043	11038	19666	19738	29432	29432					-0.03498468377097197
PCGASQSMTLK	11	Unmodified	_PCGASQSMTLK_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7679443359375	2	561.767734	1121.52091	1.8426	0.0010351	-2.2047	-0.0012385	-0.36209	-0.00020341	561.7669437526956	24.053	0.91559	24.053	23.796	24.712	0					64	18	6	0	0	0	0.0462	1	8333	8333		107.01	0.32444	1	8974700			29044	11038	19666	19738	29433	29433					-0.03498468377097197
PCGASQSMTLK	11	Unmodified	_PCGASQSMTLK_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7681884765625	2	561.767734	1121.52091	0.018856	1.0593E-05	0.65259	0.00036661	0.67145	0.0003772	561.7682394148067	24.043	0.36525	24.043	23.881	24.246	0					19	7	3	0	0	0	0.44903	1	8371	8371		47.96	3.5823	1	340900			29045	11038	19666	19738	29434	29434					-0.03498468377097197
PCGASQSMTLK	11	Unmodified	_PCGASQSMTLK_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7681274414062	2	561.767734	1121.52091	-0.94349	-0.00053002	1.1674	0.0006558	0.2239	0.00012578	561.7687152934466	23.837	0.63592	23.837	23.665	24.301	0					44	15	5	0	0	0	0.22894	1	7325	7325		70.816	9.1249	1	1273300			29046	11038	19666	19738	29435	29435					-0.03498468377097197
PCGPAEWLL	9	Unmodified	_PCGPAEWLL_					0	0	0			REV__ENST00000527711.5_3_6:125475012-125541239:+|nuORF	REV__ENST00000527711.5_3_6:125475012-125541239:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.24298095703125	2	493.244221	984.473888	-0.13004	-6.4143E-05	-2.929	-0.0014447	-3.0591	-0.0015089	493.24327382082464	36.361	0.14843	36.361	36.286	36.434	0					9	7	2	0	0	0	0.36711	1	11927	11927		44.531	0.15388	1	49478	+		29047	20014	19667	19739	29436	29436					-0.01896959865939607
PCHKITCKH	9	Unmodified	_PCHKITCKH_					0	0	0			REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7677001953125	2	533.767871	1065.52119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.399	1	26.399	25.899	26.899	0								0	0	0	0.3119	1	8298	8298		32.812	2.3088	1		+		29048	13727	19668	19740	29437	29437					-0.008950038666171167
PCHLLVLSL	9	Unmodified	_PCHLLVLSL_					0	0	0		ENSG00000148604|ENST00000652092|RGR;nc|ENSG00000148604|P47804-2|RGR;ENST00000483771.5_1_10:86004898-86007552:+|nuORF;ENST00000469446.5_1_10:86004840-86007552:+|nuORF;ENST00000372092.3_1_10:86004898-86010349:+|nuORF;nc|ENSG00000148604|P47804-3|RGR	ENSG00000148604|ENST00000652092|RGR	ENSG00000148604|ENST00000652092|RGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.793212890625	2	497.791338	993.568123	2.914	0.0014506	0.76172	0.00037918	3.6758	0.0018298	497.7918530598213	14.285	0.26882	14.285	14.171	14.44	0					10	5	3	0	0	0	0.55282	1	3553	3553		26.796	1.3459	1	199470			29049	4843	19669	19741	29438	29438					0.07108178956207212
PCHLYIVEI	9	Unmodified	_PCHLYIVEI_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7841796875	2	543.786253	1085.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.754	1	16.754	16.254	17.254	0								0	0	0	0.1633	1	4037	4037		40.573	0	1				29050	6453	19670	19742	29439	29439					0.018595712309661394
PCIGFINGQI	10	Unmodified	_PCIGFINGQI_					0	0	0			REV__PDIA3|p.E238G|1|0.18|ENSG00000167004|chr15:43765560-43765560|A/G|missense_variant	REV__PDIA3|p.E238G|1|0.18|ENSG00000167004|chr15:43765560-43765560|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2776489257812	2	531.276052	1060.53755	3.4242	0.0018192	-0.089002	-4.7284E-05	3.3352	0.0017719	531.2758337647451	21.922	0.21582	21.922	21.856	22.071	0					9	4	3	0	0	0	0.26673	1	7224	7224		71.296	4.8664	1	591420	+		29051	21354	19671	19743	29440	29440					0.00970400571168284
PCIHKDKM	8	Carbamidomethyl (C)	_PC(Carbamidomethyl (C))IHKDKM_	PC(1)IHKDKM		PC(46)IHKDKM		0	1	0			REV__ENST00000370620.5_1_X:135749294-135749660:-|nuORF	REV__ENST00000370620.5_1_X:135749294-135749660:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.755859375	2	514.75443	1027.49431	0.023895	1.23E-05	2.2137	0.0011395	2.2376	0.0011518	514.7556980217838	34.676	0.16965	34.676	34.561	34.731	0					7	4	2	0	0	0	0.61938	1	12933	12933		45.952	8.7928	1	127480	+		29052	18637	19672	19744	29441	29441	663				-0.018341124777634832
PCILFPAR	8	Unmodified	_PCILFPAR_					0	0	0		ENST00000501520.1_1_16:28303156-28303378:-|nuORF	ENST00000501520.1_1_16:28303156-28303378:-|nuORF	ENST00000501520.1_1_16:28303156-28303378:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.758056640625	2	458.757298	915.500044	0.092945	4.2639E-05	3.2001	0.0014681	3.2931	0.0015107	458.75831977403055	20.884	0.17218	20.884	20.78	20.952	0					6	4	2	0	0	0	0.66238	1	5971	5971		39.021	4.849	1	40780			29053	10148	19673	19745	29442	29442					0.038913540961971194
PCKFHSRL	8	Unmodified	_PCKFHSRL_					0	0	0			REV__SENP7|p.K545Nfs*11|1|0.49|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	REV__SENP7|p.K545Nfs*11|1|0.49|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2641906738281	2	494.263279	986.512005	-0.067399	-3.3313E-05	1.7812	0.00088036	1.7138	0.00084705	494.264199579839	23.652	0.18955	23.652	23.561	23.751	0					9	6	2	0	0	0	0.61938	1	6864	6864		45.952	3.4775	1	125220	+		29054	21502	19674	19746	29443	29443					0.018209708393897017
PCKLMQVAL	9	Unmodified	_PCKLMQVAL_					0	0	0			REV__ENST00000308406.9_1_17:19284741-19284873:+|nuORF	REV__ENST00000308406.9_1_17:19284741-19284873:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7767028808594	2	501.777373	1001.54019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.251	1	30.251	29.751	30.751	0								0	0	0	0.1836	1	11288	11288		53.351	0.26249	1		+		29055	18255	19675	19747	29444	29444					0.039485327044531005
PCKNLAPV	8	Unmodified	_PCKNLAPV_					0	0	0			REV__KMT2E|p.R802Kfs*8|1|0.35|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant	REV__KMT2E|p.R802Kfs*8|1|0.35|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.2339172363281	2	421.233656	840.452759	-0.92132	-0.00038809	1.4412	0.0006071	0.51992	0.00021901	421.2342420325054	46.083	0.2158	46.083	45.97	46.186	0					19	13	2	0	0	0	0.79176	1	17064	17064		21.702	0	1	90098	+		29056	12840	19676	19748	29445	29445					0.02615074825200736
PCLENMTTAP	10	Oxidation (M)	_PCLENM(Oxidation (M))TTAP_		PCLENM(1)TTAP		PCLENM(48)TTAP	0	0	1		ENSG00000182957|ENST00000382108|SPATA13;ENST00000466831.2_1_13:24796959-24798912:+|nuORF	ENSG00000182957|ENST00000382108|SPATA13	ENSG00000182957|ENST00000382108|SPATA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7390747070312	2	546.738642	1091.46273	1.9082	0.0010433	-1.7146	-0.00093742	0.19362	0.00010586	546.7378940631482	22.43	0.36559	22.43	22.223	22.589	0					10	5	3	0	0	0	0.47859	1	7474	7474		47.657	8.8512	1	610140			29057	6929	19677	19749	29446	29446		281			-0.07934150022401809
PCLILALL	8	Unmodified	_PCLILALL_					0	0	0		ENSG00000162267|ENST00000449956|ITIH3;ITIH3|p.G132Afs*12|1|0.07|ENSG00000162267|chr3:52797113-52797146|GGAGGAAGTTGGAGAAGTTCACAGTCTCGGTCAA/-|frameshift_variant	ENSG00000162267|ENST00000449956|ITIH3;REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	REV__ENST00000469014.1_1_17:61926730-61934782:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.2722473144531	2	428.27225	854.529947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.762	1	37.762	37.262	38.262	0								0	0	0	1.7419	1	14339	14339		33.493	0	1				29058	19446;5450	19678	19750	29447	29447					0.09686293041545468
PCLKMDKKK	9	Unmodified	_PCLKMDKKK_					0	0	0		ENST00000378588.4_1_X:37670194-37670278:+|nuORF	ENST00000378588.4_1_X:37670194-37670278:+|nuORF	ENST00000378588.4_1_X:37670194-37670278:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.2095642089844	3	364.208562	1089.60386	3.1392	0.0011433	-0.22532	-8.2064E-05	2.9138	0.0010612	364.2083379875291	31.199	0.51154	31.199	31.043	31.554	0					18	10	3	0	0	0	0.35021	1	11630	11630		45.972	7.2186	1	1813600			29059	9072	19679	19751	29448	29448					0.0626389314154494
PCLKVMHK	8	Unmodified	_PCLKVMHK_					0	0	0		RYR3|p.T1272M|1|0.25|ENSG00000198838|chr15:33646400-33646400|C/T|missense_variant	RYR3|p.T1272M|1|0.25|ENSG00000198838|chr15:33646400-33646400|C/T|missense_variant	RYR3|p.T1272M|1|0.25|ENSG00000198838|chr15:33646400-33646400|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2662658691406	2	478.264433	954.514313	0.42459	0.00020306	2.3213	0.0011102	2.7459	0.0013133	478.2657819572865	35.804	0.16301	35.804	35.751	35.914	0					8	4	2	0	0	0	0.6282	1	13479	13479		44.531	11.719	1	53039			29060	22371	19680	19752	29449	29449					0.03523683252842602
PCLPEEASVG	10	Unmodified	_PCLPEEASVG_					0	0	0		ENST00000550487.5_1_12:50506019-50513852:+|nuORF	ENST00000550487.5_1_12:50506019-50513852:+|nuORF	ENST00000550487.5_1_12:50506019-50513852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2344055175781	2	501.23405	1000.45355	-0.59345	-0.00029746	0.35034	0.0001756	-0.24311	-0.00012186	501.23428510826375	30.108	1.7999	30.108	28.658	30.458	0					76	36	3	0	0	0	0.63073	1	10715	10715		30.504	0.6621	1	1878900			29061	10617	19681	19753	29450	29450					-0.04666175316401677
PCLPFPNRR	9	Unmodified	_PCLPFPNRR_					0	0	0			REV__nc|ENSG00000214050|Q8IX29-2|FBXO16	REV__nc|ENSG00000214050|Q8IX29-2|FBXO16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2947387695312	2	550.295111	1098.57567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.65	1	38.65	38.15	39.15	0								0	0	0	0.31623	1	13030	13030		31.955	4.0726	1		+		29062	17577	19682	19754	29451	29451					0.03032331276494915
PCLREDAI	8	Unmodified	_PCLREDAI_					0	0	0		ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;ZMAT1|p.I482Tfs*17|1|0.04|ENSG00000166432|chrX:101883979-101883982|CTAA/-|frameshift_variant;ZMAT1|p.Y484Tfs*16|1|0.04|ENSG00000166432|chrX:101883977-101883977|A/-|frameshift_variant;ENSG00000166432|ENST00000651725|ZMAT1	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.729248046875	2	458.731477	915.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.869	1	24.869	24.369	25.369	0								0	0	0	1.7419	1	7822	7822		44.531	5.7249	1				29063	5900	19683	19755	29452	29452					-0.012704343883683578
PCLSHIKEQL	10	Unmodified	_PCLSHIKEQL_					0	0	0			REV__ENST00000581549.1_1_17:70599690-70599849:-|nuORF	REV__ENST00000581549.1_1_17:70599690-70599849:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.87890625	3	389.877869	1166.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.395	1	14.395	13.895	14.895	0								0	0	0	0.37129	1	3571	3571		39.253	6.4404	1		+		29064	20456	19684	19756	29453	29453					0.035137436626882845
PCLSLCLSLP	10	Unmodified	_PCLSLCLSLP_					0	0	0		ENST00000606025.5_3_2:71168962-71169430:-|nuORF	ENST00000606025.5_3_2:71168962-71169430:-|nuORF	ENST00000606025.5_3_2:71168962-71169430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2753295898438	2	523.274664	1044.53477	0.48589	0.00025426	-0.53928	-0.00028219	-0.05339	-2.7938E-05	523.2743297472679	36.052	0.50703	36.052	35.859	36.366	0					93	23	6	0	0	0	0.65213	1	12288	12288		27.882	1.1893	1	7875000			29065	11077	19685	19757	29454	29454					0.01428809121989616
PCLYVYNK	8	Unmodified	_PCLYVYNK_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2503662109375	2	500.252046	998.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.452	1	19.452	18.952	19.952	0								0	0	0	1.7419	1	5035	5035		46.766	7.9603	1				29066	2538	19686	19758	29455	29455					-0.00976673348895929
PCNARDKEM	9	Unmodified	_PCNARDKEM_					0	0	0			REV__nc|ENSG00000212643|Q15695|ZRSR2P1	REV__nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2346801757812	2	532.236601	1062.45865	-1.2664	-0.00067405	-1.1118	-0.00059176	-2.3783	-0.0012658	532.2360799493572	23.945	0.15816	23.945	23.877	24.035	0					10	4	3	0	0	0	0.1115	1	7384	7384		76.774	5.4784	1	133990	+		29067	16307	19687	19759	29456	29456					-0.07008194725449357
PCNMPKLAL	9	Oxidation (M)	_PCNM(Oxidation (M))PKLAL_		PCNM(1)PKLAL		PCNM(66)PKLAL	0	0	1			REV__nc|ENSG00000143374|Q9BW92-2|TARS2	REV__nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.75860595703125	2	501.759181	1001.50381	-0.94508	-0.0004742	0.0038703	1.942E-06	-0.94121	-0.00047226	501.7591390487058	30.536	0.334	30.536	30.415	30.749	0					29	12	3	0	0	0	0.16524	1	10020	10020		65.803	65.803	1	1276500	+		29068	15185	19688	19760	29457	29457		577			0.0031165580774086266
PCNMPKLAL	9	Oxidation (M)	_PCNM(Oxidation (M))PKLAL_		PCNM(1)PKLAL		PCNM(74)PKLAL	0	0	1			REV__nc|ENSG00000143374|Q9BW92-2|TARS2	REV__nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.75860595703125	2	501.759181	1001.50381	-2.092	-0.0010497	1.0633	0.0005335	-1.0287	-0.00051616	501.7597064933325	30.54	0.34409	30.54	30.42	30.764	0					23	9	4	0	0	0	0.1236	1	10399	10399		73.975	16.163	1	761210	+		29069	15185	19688	19760	29458	29458		577			0.0031165580774086266
PCPAAAGGG	9	Unmodified	_PCPAAAGGG_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.6573791503906	2	350.657781	699.301009	0.49614	0.00017398	-0.90875	-0.00031866	-0.41261	-0.00014468	350.6573819059018	45.805	0.23825	45.805	45.705	45.944	0					20	14	2	0	0	0	0.61124	1	17004	17004		14.664	0	1	82055			29070	1225	19689	19761	29459	29459					-0.060669062024885534
PCPAAAGGG	9	Unmodified	_PCPAAAGGG_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.6575927734375	2	350.657781	699.301009	0.50929	0.00017859	-0.79073	-0.00027727	-0.28144	-9.8689E-05	350.657427346565	45.795	0.16436	45.795	45.686	45.85	0					14	9	2	0	0	0	0.61124	1	17671	17671		14.664	0.88877	1	101380			29071	1225	19689	19761	29460	29460					-0.060669062024885534
PCPGRPAPW	9	Unmodified	_PCPGRPAPW_					0	0	0		ENST00000375153.7_1_1:19638904-19639291:+|nuORF	ENST00000375153.7_1_1:19638904-19639291:+|nuORF	ENST00000375153.7_1_1:19638904-19639291:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7427062988281	2	490.742179	979.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.633	1	20.633	20.133	21.133	0								0	0	0	0.30835	1	5838	5838		33.516	0.022601	1				29072	9026	19690	19762	29461	29461					-0.02075004568996519
PCPQESCKR	9	Unmodified	_PCPQESCKR_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.23974609375	2	524.239144	1046.46373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.834	1	14.834	14.334	15.334	0								0	0	0	0.38667	1	3278	3278		14.865	3.3539	1		+		29073	14859	19691	19763	29462	29462					-0.05763890862817789
PCPQPSAAPP	10	Unmodified	_PCPQPSAAPP_					0	0	0			REV__nc|ENSG00000099869|Q6U949|IGF2-AS	REV__nc|ENSG00000099869|Q6U949|IGF2-AS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7305603027344	2	482.731477	963.448402	-1.3013	-0.00062819	0.19642	9.4817E-05	-1.1049	-0.00053337	482.73125149982684	30.144	0.1258	30.144	30.096	30.222	0					8	5	2	0	0	0	0.44469	1	9878	9878		51.335	7.2187	1	68090	+		29074	20953	19692	19764	29463	29463					-0.034784343883757174
PCPRLSQEL	9	Unmodified	_PCPRLSQEL_					0	0	0		ENSG00000196427|ENST00000415641|NBPF4;ENSG00000186086|ENST00000495380|NBPF6;nc|ENSG00000186086|Q5VWK0-2|NBPF6	ENSG00000196427|ENST00000415641|NBPF4	ENSG00000196427|ENST00000415641|NBPF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7733154296875	2	521.771134	1041.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.026	1	45.026	44.526	45.526	0								0	0	0	0.1836	1	18038	18038		53.351	2.1588	1				29075	7122	19693	19765	29464	29464					0.00861212565769165
PCPSLPSPSVQ	11	Unmodified	_PCPSLPSPSVQ_					0	0	0			REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF	REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2767944335938	2	556.276249	1110.53795	-0.12871	-7.1601E-05	-1.1511	-0.00064035	-1.2798	-0.00071195	556.2760898797612	18.821	0.3897	18.821	18.578	18.967	0					15	8	3	0	0	0	0.70921	1	5899	5899		17.468	0	1	232200	+		29076	19816	19694	19766	29465	29465					-0.01290224499643955
PCPSSLNSL	9	Unmodified	_PCPSSLNSL_					0	0	0		ENST00000597611.7_3_19:18654757-18654817:-|nuORF	ENST00000597611.7_3_19:18654757-18654817:-|nuORF	ENST00000597611.7_3_19:18654757-18654817:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.22369384765625	2	459.223485	916.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.984	1	32.984	32.484	33.484	0								0	0	0	0.14517	1	12158	12158		60.972	0.67798	1				29077	11010	19695	19767	29466	29466					-0.029141406252620072
PCPVGHLPW	9	Unmodified	_PCPVGHLPW_					0	0	0			REV__ENST00000334370.8_1_19:42840378-42840982:+|nuORF	REV__ENST00000334370.8_1_19:42840378-42840982:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2533264160156	2	503.25238	1004.49021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.607	1	26.607	26.107	27.107	0								0	0	0	0.28056	1	8591	8591		39.021	1.21	1		+		29078	18402	19696	19768	29467	29467					-0.011858339091759262
PCQEAQPCRAL	11	Unmodified	_PCQEAQPCRAL_					0	0	0		ENST00000486828.6_1_5:176910647-176917003:-|nuORF	ENST00000486828.6_1_5:176910647-176917003:-|nuORF	ENST00000486828.6_1_5:176910647-176917003:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	608.281982421875	2	608.284082	1214.55361	-1.9479	-0.0011848	-1.0372	-0.0006309	-2.985	-0.0018157	608.2834815590847	29.167	0.10656	29.167	29.103	29.209	0					5	3	2	0	0	0	0.62108	1	9785	9785		35.152	4.8343	1	46074			29079	10027	19697	19769	29468	29468					-0.04508261254250101
PCQEQAAVLN	10	Unmodified	_PCQEQAAVLN_					0	0	0		ENSG00000175265|ENST00000359187|GOLGA8A;ENSG00000215252|ENST00000683415|GOLGA8B;nc|ENSG00000175265|A7E2F4|GOLGA8A	ENSG00000175265|ENST00000359187|GOLGA8A	ENSG00000175265|ENST00000359187|GOLGA8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.756591796875	2	536.758223	1071.50189	-0.43441	-0.00023317	-1.4892	-0.00079933	-1.9236	-0.0010325	536.7575695466409	27.783	0.26508	27.783	27.643	27.908	0					13	9	2	0	0	0	0.64178	1	8895	8895		29.15	2.1022	1	60334			29080	6544	19698	19770	29469	29469					-0.030996816764854884
PCQPVTLYL	9	Unmodified	_PCQPVTLYL_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2734985351562	2	517.272978	1032.5314	1.3629	0.00070499	1.7227	0.00089112	3.0856	0.0015961	517.2736295871075	32.31	0.055153	32.31	32.277	32.332	0					4	2	2	0	0	0	0.54267	1	10442	10442		27.882	0	1	38252	+		29081	17269	19699	19771	29470	29470					0.016438823396356383
PCQTSEVLMR	10	Oxidation (M)	_PCQTSEVLM(Oxidation (M))R_		PCQTSEVLM(1)R		PCQTSEVLM(67)R	0	0	1			REV__FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant	REV__FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.2781372070312	2	590.278466	1178.54238	-0.11683	-6.896E-05	-0.2241	-0.00013228	-0.34092	-0.00020124	590.2786993464059	22.685	0.20983	22.685	22.584	22.794	0					11	4	3	0	0	0	0.2978	1	7702	7702		67.494	7.3754	1	1220900	+		29082	20657	19700	19772	29471	29471		738			-0.039750833483822134
PCQVPPTAPPA	11	Unmodified	_PCQVPPTAPPA_					0	0	0			REV__KCNQ2|p.A707T|1|0.47|ENSG00000075043|chr20:63407144-63407144|C/T|missense_variant	REV__KCNQ2|p.A707T|1|0.47|ENSG00000075043|chr20:63407144-63407144|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.274169921875	2	539.273509	1076.53247	0.68222	0.0003679	-3.2903	-0.0017744	-2.6081	-0.0014065	539.7726469747952	35.824	0.51257	35.824	35.637	36.149	0					22	10	3	0	0	0	0.51875	1	13984	13984		42.864	3.6114	1	99893	+		29083	20777	19701	19773	29472	29472					-0.002739032914632844
PCRAATPQK	9	Unmodified	_PCRAATPQK_					0	0	0		ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2582092285156	2	486.258194	970.501834	-0.29135	-0.00014167	1.5835	0.00076997	1.2921	0.0006283	486.25918194036666	11.871	2.0089	11.871	11.735	13.744	0					147	61	5	0	0	0	0.48389	1	2793	2793		34.173	0.65696	1	35520000			29084	1624	19702	19774	29473	29473					0.01540363114156662
PCRCRLGAI	9	Unmodified	_PCRCRLGAI_					0	0	0			REV__CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant	REV__CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.76556396484375	2	494.762589	987.510625	-1.2569	-0.00062185	1.8211	0.00090102	0.56423	0.00027916	494.76561139344693	33.182	0.48219	33.182	32.984	33.466	0					38	20	3	0	0	0	0.23186	1	11116	11116		57.811	13.434	1	184600	+		29085	12418	19703	19775	29474	29474					0.016370134789781332
PCRHILAL	8	Unmodified	_PCRHILAL_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.269287109375	2	461.768197	921.521842	2.5621	0.0011831	2.2946	0.0010596	4.8567	0.0022427	461.77002103802124	35.924	0.46258	35.924	35.704	36.166	0					26	9	3	0	0	0	0.59916	1	13966	13966		49.211	8.6382	1	903580			29086	3818	19704	19776	29475	29475					0.05794158844753383
PCRKGRRSF	9	Unmodified	_PCRKGRRSF_					0	0	0			REV__ENST00000378536.4_1_1:2240387-2240723:+|nuORF	REV__ENST00000378536.4_1_1:2240387-2240723:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.5379333496094	3	369.538182	1105.59272	-0.23288	-8.6057E-05	-0.28347	-0.00010475	-0.51635	-0.00019081	369.53802242692956	29.166	0.21468	29.166	29.059	29.274	0					7	4	2	0	0	0	0.48389	1	10662	10662		34.173	0	1	548290	+		29087	18745	19705	19777	29476	29476					0.04414251882303688
PCRPLPMPI	9	Unmodified	_PCRPLPMPI_					0	0	0			REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	341.8538513183594	3	341.854119	1022.54053	0.21366	7.3041E-05	-1.1176	-0.00038204	-0.90389	-0.000309	341.85371162270684	20.7	0.25631	20.7	20.512	20.769	0					12	7	2	0	0	0	0.26904	1	5577	5577		53.351	27.901	1	93083	+		29088	20755	19706	19778	29477	29477					0.030159524243003943
PCRPLPMPI	9	Unmodified	_PCRPLPMPI_					0	0	0			REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2770385742188	2	512.277541	1022.54053	0.44184	0.00022634	-3.2197	-0.0016494	-2.7778	-0.001423	512.2761907532846	20.758	0.32739	20.758	20.599	20.927	0					11	7	2	0	0	0	0.22377	1	5921	5921		33.516	0	1	94696	+		29089	20755	19706	19778	29478	29478					0.030159524243003943
PCRPLPMPI	9	Unmodified	_PCRPLPMPI_					0	0	0			REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.8538513183594	3	341.854119	1022.54053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.942	1	20.942	20.442	21.442	0								0	0	0	0.19749	1	6736	6736		51.335	9.9088	1		+		29090	20755	19706	19778	29479	29479					0.030159524243003943
PCRTSRVRQ	9	Unmodified	_PCRTSRVRQ_					0	0	0		ENST00000394951.5_1_16:31123619-31123802:+|nuORF	ENST00000394951.5_1_16:31123619-31123802:+|nuORF	ENST00000394951.5_1_16:31123619-31123802:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.2012939453125	3	368.201458	1101.58254	0.48051	0.00017693	-0.98473	-0.00036258	-0.50422	-0.00018565	368.2010343288069	15.299	0.1209	15.299	15.242	15.363	0					7	4	2	0	0	0	0.48389	1	3307	3307		27.047	0	1	125300			29091	9184	19707	19779	29480	29480					0.03581644157065966
PCRWVNIL	8	Unmodified	_PCRWVNIL_					0	0	0		ENST00000372939.5_1_X:100297267-100306641:-|nuORF	ENST00000372939.5_1_X:100297267-100306641:-|nuORF	ENST00000372939.5_1_X:100297267-100306641:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.774658203125	2	500.77348	999.532406	1.1025	0.00055209	1.3811	0.00069162	2.4836	0.0012437	500.7739574767826	33.492	0.26833	33.492	33.382	33.65	0					9	5	2	0	0	0	0.60719	1	12747	12747		47.916	0.25827	1	1038800			29092	8984	19708	19780	29481	29481					0.03262141499192239
PCSAARLAAL	10	Unmodified	_PCSAARLAAL_					0	0	0		ENST00000535715.5_1_11:63765177-63769218:+|nuORF	ENST00000535715.5_1_11:63765177-63769218:+|nuORF	ENST00000535715.5_1_11:63765177-63769218:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.77154541015625	2	486.768394	971.522236	-0.32126	-0.00015638	4.219	0.0020537	3.8977	0.0018973	486.7716736232044	30.085	0.20621	30.085	29.961	30.167	0					12	5	3	0	0	0	0.41335	1	10840	10840		54.776	0.053964	1	256310			29093	10482	19709	19781	29482	29482					0.03533533773952513
PCSGGPDRPE	10	Unmodified	_PCSGGPDRPE_					0	0	0		nc|ENSG00000204682|Q5T4H9|MIR1915HG	nc|ENSG00000204682|Q5T4H9|MIR1915HG	nc|ENSG00000204682|Q5T4H9|MIR1915HG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2216491699219	2	507.719098	1013.42364	-0.028045	-1.4239E-05	1.9456	0.00098782	1.9176	0.00097358	508.2217519145567	13.486	0.21846	13.486	13.406	13.624	0					16	6	4	0	0	0	0.58896	1	3085	3085		35.618	2.1027	1	1450400			29094	11723	19710	19782	29483	29483					-0.08253114261742667
PCSGLWINPLI	11	Unmodified	_PCSGLWINPLI_					0	0	0			REV__nc|ENSG00000112425|O95278-7|EPM2A	REV__nc|ENSG00000112425|O95278-7|EPM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	606.8261108398438	2	606.825909	1211.63727	0.76625	0.00046498	0.042365	2.5708E-05	0.80862	0.00049069	606.8260262344511	48.903	0.12143	48.903	48.867	48.988	0					13	7	2	0	0	0	0.56817	1	18451	18451		39.253	10.083	1	115310	+		29095	14006	19711	19783	29484	29484					0.039912181850922934
PCSGRVEVKHA	11	Unmodified	_PCSGRVEVKHA_					0	0	0		nc|ENSG00000177675|Q9NR16-2|CD163L1;ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.8745422363281	3	394.873118	1181.59753	1.9973	0.00078869	2.0186	0.00079711	4.016	0.0015858	394.8736484138052	23.583	0.1959	23.583	23.485	23.681	0					11	7	2	0	0	0	0.50799	1	6830	6830		43.651	9.7292	1	30042			29096	6682	19712	19784	29485	29485					0.013990912344070239
PCSHLLKS	8	Unmodified	_PCSHLLKS_					0	0	0			REV__ENSG00000249961|ENST00000433154|TERB1	REV__ENSG00000249961|ENST00000433154|TERB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.73638916015625	2	442.736563	883.458573	0.046774	2.0708E-05	-1.1177	-0.00049485	-1.0709	-0.00047415	442.736285119286	34.754	0.7799	34.754	34.602	35.382	0					37	22	3	0	0	0	0.68754	1	13445	13445		35.201	3.2459	1	211450	+		29097	17726	19713	19785	29486	29486					0.012181733368834102
PCSLKHQAG	9	Unmodified	_PCSLKHQAG_					0	0	0		ENST00000468564.6_1_22:44584872-44587985:+|nuORF	ENST00000468564.6_1_22:44584872-44587985:+|nuORF	ENST00000468564.6_1_22:44584872-44587985:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7372741699219	2	470.737094	939.459635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.15	1	21.15	20.65	21.65	0								0	0	0	0.27025	1	5779	5779		40.778	1.972	1				29098	9815	19714	19786	29487	29487					-0.012516122942315633
PCSNCTVQYY	10	Unmodified	_PCSNCTVQYY_					0	0	0		ENST00000303296.8_1_11:33378294-33378417:+|nuORF	ENST00000303296.8_1_11:33378294-33378417:+|nuORF	ENST00000303296.8_1_11:33378294-33378417:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.2379760742188	2	589.236267	1176.45798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.384	1	16.384	15.884	16.884	0								0	0	0	0.4201	1	4672	4672		16.717	0.24424	1				29099	8504	19715	19787	29488	29488					-0.12319034165147968
PCSQSQLSL	9	Unmodified	_PCSQSQLSL_					0	0	0			REV__SPG20|p.P162Q|1|0.15|ENSG00000133104|chr13:36335346-36335346|G/T|missense_variant	REV__SPG20|p.P162Q|1|0.15|ENSG00000133104|chr13:36335346-36335346|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.73236083984375	2	481.734217	961.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.006	1	31.006	30.506	31.506	0								0	0	0	0.23445	1	10627	10627		45.972	6.7194	1		+		29100	21597	19716	19788	29489	29489					-0.02838755596530973
PCSRFKRK	8	Unmodified	_PCSRFKRK_					0	0	0		ENST00000598285.1_1_19:48259921-48260259:+|nuORF	ENST00000598285.1_1_19:48259921-48260259:+|nuORF	ENST00000598285.1_1_19:48259921-48260259:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.28912353515625	2	511.289828	1020.5651	1.2233	0.00062548	-2.3362	-0.0011945	-1.1129	-0.000569	511.28849548781875	19.667	0.66698	19.667	19.412	20.079	0					20	13	3	0	0	0	0.49216	1	6268	6268		60.972	0.67798	1	841620			29101	11016	19717	19789	29490	29490					0.05564348622056059
PCSVHTLAGSF	11	Unmodified	_PCSVHTLAGSF_					0	0	0			REV__ENST00000557379.1_1_14:20768687-20774096:-|nuORF	REV__ENST00000557379.1_1_14:20768687-20774096:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.7669677734375	2	559.768591	1117.52263	-0.82828	-0.00046365	-2.0688	-0.0011581	-2.8971	-0.0016217	560.2689111378211	34.603	0.33812	34.603	34.48	34.818	0					12	10	2	0	0	0	0.47622	1	12289	12289		45.972	5.1941	1	85476	+		29102	20259	19718	19790	29491	29491					-0.031430912968289704
PCTTSRLSRC	10	Unmodified	_PCTTSRLSRC_					0	0	0			REV__ENST00000395811.9_1_17:17090115-17090496:+|nuORF	REV__ENST00000395811.9_1_17:17090115-17090496:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2730102539062	2	562.270975	1122.5274	3.4699	0.001951	0.33358	0.00018756	3.8035	0.0021386	562.2712404258986	20.217	0.36731	20.217	19.961	20.328	0					14	7	3	0	0	0	0.21754	1	6395	6395		77.318	11.514	1	2432000	+		29103	18887	19719	19791	29492	29492					-0.02896530425709898
PCVKRVEL	8	Unmodified	_PCVKRVEL_					0	0	0			REV__ENSG00000101236|ENST00000358395|RNF24	REV__ENSG00000101236|ENST00000358395|RNF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2740173339844	2	472.273312	942.532072	0.587	0.00027723	-0.31748	-0.00014994	0.26952	0.00012729	472.27336080313927	33.394	0.27237	33.394	33.259	33.532	0					16	6	3	0	0	0	0.54629	1	12769	12769		55.504	0.72789	1	760050	+		29104	13594	19720	19792	29493	29493					0.05850721779336254
PCVLSLVY	8	Unmodified	_PCVLSLVY_					0	0	0			REV__NIPAL1|p.S365Nfs*17|1|0.05|ENSG00000163293|chr4:48036032-48036033|-/ATAAGATG|frameshift_variant	REV__NIPAL1|p.S365Nfs*17|1|0.05|ENSG00000163293|chr4:48036032-48036033|-/ATAAGATG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2454528808594	2	447.243689	892.472826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.395	1	17.395	16.895	17.895	0								0	0	0	1.7419	1	4900	4900		46.766	7.9603	1		+		29105	15868	19721	19793	29494	29494					0.022288257651553067
PCWSDPFPVL	10	Unmodified	_PCWSDPFPVL_					0	0	0			REV__ENST00000368408.3_1_1:155059141-155059444:+|nuORF	REV__ENST00000368408.3_1_1:155059141-155059444:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.7750854492188	2	580.775885	1159.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.805	1	41.805	41.305	42.305	0								0	0	0	0.3652	1	16649	16649		40.573	1.3198	1		+		29106	18605	19722	19794	29495	29495					-0.03617019148691725
PCYKRAAKFAN	11	Unmodified	_PCYKRAAKFAN_					0	0	0			REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.55810546875	3	423.55713	1267.64956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.266	1	15.266	14.766	15.766	0								0	0	0	0.45674	1	3384	3384		20.03	0.7678	1		+		29107	17238	19723	19795	29496	29496					0.02644254648180322
PDAAHMVQQ	9	Unmodified	_PDAAHMVQQ_					0	0	0			REV__MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant	REV__MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.730712890625	2	498.732009	995.449465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.48	1	13.48	12.98	13.98	0								0	0	0	0.29774	1	3291	3291		35.618	0.41757	1		+		29108	17698	19724	19796	29497	29497					-0.04844220019447221
PDAAKRLPPR	10	Unmodified	_PDAAKRLPPR_					0	0	0			REV__ENST00000521391.1_1_5:167891940-167899269:+|nuORF	REV__ENST00000521391.1_1_5:167891940-167899269:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.83349609375	2	560.832914	1119.65128	1.2893	0.00072306	-0.062326	-3.4954E-05	1.2269	0.00068811	560.8328002842385	19.153	0.16479	19.153	19.047	19.212	0					5	3	2	0	0	0	0.4287	1	5882	5882		58.782	12.83	1	587780	+		29109	19958	19725	19797	29498	29498					0.09623631728413784
PDAAPVTK	8	Unmodified	_PDAAPVTK_					0	0	0		nc|ENSG00000165138|Q68DC2-4|ANKS6;ENSG00000165138|ENST00000353234|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.7210388183594	2	399.721436	797.428318	-2.2468	-0.00089811	2.5106	0.0010035	0.26373	0.00010542	399.72236220619664	15.744	0.10811	15.744	15.686	15.794	0					7	4	2	0	0	0	0.70055	1	3589	3589		33.516	0	1	140470			29110	11622	19726	19798	29499	29499					0.02150137943340269
PDAHKAAM	8	Unmodified	_PDAHKAAM_					0	0	0			REV__ENST00000447530.5_1_X:151883158-151884479:+|nuORF	REV__ENST00000447530.5_1_X:151883158-151884479:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.7049865722656	2	420.705263	839.395972	-0.038054	-1.6009E-05	-0.33777	-0.0001421	-0.37582	-0.00015811	420.7054351815582	21.559	0.20561	21.559	21.435	21.641	0					8	5	2	0	0	0	0.60719	1	6275	6275		47.916	0	1	41511	+		29111	19288	19727	19799	29500	29500					-0.030149727313187213
PDEGRGHGRG	10	Unmodified	_PDEGRGHGRG_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2493286132812	2	519.247203	1036.47985	4.8785	0.0025332	-1.269	-0.00065892	3.6095	0.0018742	519.2464645462558	28.627	0.26198	28.627	28.552	28.813	0					24	10	3	0	0	0	0.47859	1	9239	9239		47.657	47.657	1	159860			29112	8072	19728	19800	29501	29501					-0.03692725310042988
PDERFDFL	8	Unmodified	_PDERFDFL_					0	0	0		nc|ENSG00000138430|Q9NTK5-3|OLA1;ENSG00000138430|ENST00000284719|OLA1	nc|ENSG00000138430|Q9NTK5-3|OLA1	nc|ENSG00000138430|Q9NTK5-3|OLA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7503051757812	2	519.748182	1037.48181	3.363	0.0017479	-0.26718	-0.00013887	3.0958	0.001609	519.7483242458443	42.419	0.33449	42.419	42.246	42.581	0					18	9	3	0	0	0	0.66372	1	16913	16913		38.806	1.647	1	197690			29113	4258	19729	19801	29502	29502					-0.03543109344809636
PDIEFAKK	8	Unmodified	_PDIEFAKK_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.P541Lfs*16|1|0.49|ENSG00000183091|chr2:151695630-151695630|G/-|frameshift_variant;NEB|p.K715Nfs*8|1|0.06|ENSG00000183091|chr2:151691930-151691930|T/-|frameshift_variant;NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB;NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2611083984375	2	474.263468	946.512382	-1.6025	-0.00076001	-2.6548	-0.0012591	-4.2573	-0.0020191	474.2620007226539	15.526	0.1038	15.526	15.483	15.587	0					6	3	2	0	0	0	0.51384	1	3571	3571		58.782	2.0609	1	115450			29114	6942;11849	19730	19802	29503	29503					0.03698669040238656
PDIQKLVPD	9	Unmodified	_PDIQKLVPD_					0	0	0			REV__ENSG00000135999|ENST00000258484|EPC2	REV__ENSG00000135999|ENST00000258484|EPC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.787353515625	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.193	1	22.193	21.693	22.693	0								0	0	0	0.28164	1	6569	6569		38.806	1.647	1		+		29115	14838	19731	19803	29504	29504					0.0492232324043016
PDKRPLRAQ	9	Unmodified	_PDKRPLRAQ_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.87945556640625	3	360.880602	1079.61998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.281	1	22.281	21.781	22.781	0								0	0	0	0.3119	1	6611	6611		32.812	3.6629	1		+		29116	13516	19732	19804	29505	29505					0.08335058694319741
PDKSILIRR	9	Unmodified	_PDKSILIRR_					0	0	0			REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.5645446777344	3	366.564502	1096.67168	0.48032	0.00017607	-0.69349	-0.00025421	-0.21317	-7.814E-05	366.56425762669437	20.855	0.71431	20.855	20.297	21.011	0					34	14	3	0	0	0	0.56424	1	6787	6787		25.574	2.0514	1	824560	+		29117	19690	19733	19805	29506	29506					0.12720802388230368
PDLESTRH	8	Unmodified	_PDLESTRH_					0	0	0			REV__nc|ENSG00000161649|Q6UXG3-2|CD300LG	REV__nc|ENSG00000161649|Q6UXG3-2|CD300LG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7371520996094	2	477.735606	953.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.312	1	34.312	33.812	34.812	0								0	0	0	1.7419	1	12134	12134		37.159	3.6435	1		+		29118	21092	19734	19806	29507	29507					-0.021931641473884156
PDLGTVSI	8	Unmodified	_PDLGTVSI_					0	0	0			REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2213134765625	2	401.221268	800.427984	-0.60466	-0.0002426	0.58054	0.00023292	-0.024119	-9.6769E-06	401.22142785337365	31.529	0.41599	31.529	31.37	31.786	0					12	8	2	0	0	0	0.52345	1	11787	11787		57.811	2.3071	1	152160	+		29119	15171	19735	19807	29508	29508					0.019787182234722422
PDMQELLRS	9	Unmodified	_PDMQELLRS_					0	0	0		WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant	WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.517578125	3	363.518341	1087.53319	-0.70262	-0.00025541	-1.9579	-0.00071172	-2.6605	-0.00096714	363.5177613586278	24.581	0.13132	24.581	24.546	24.677	0					6	4	2	0	0	0	0.56424	1	7548	7548		25.574	1.3422	1	102330			29120	6023	19736	19808	29509	29509					-0.007071086424275563
PDMQRFLQ	8	Unmodified	_PDMQRFLQ_					0	0	0			REV__ENST00000175756.9_1_2:131131718-131131856:+|nuORF	REV__ENST00000175756.9_1_2:131131718-131131856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7597045898438	2	517.758027	1033.5015	1.5654	0.00081051	3.3672	0.0017434	4.9327	0.0025539	517.7597530042018	20.641	0.36686	20.641	20.427	20.793	0					12	7	3	0	0	0	0.58597	1	6597	6597		51.335	5.3632	1	833300	+		29121	17864	19737	19809	29510	29510					-0.013910566056893003
PDNWVISIY	9	Unmodified	_PDNWVISIY_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7794799804688	2	553.779482	1105.54441	0.0060051	3.3255E-06	0.48064	0.00026617	0.48665	0.0002695	553.7796883503273	42.742	0.28177	42.742	42.607	42.889	0					23	13	3	0	0	0	0.41113	1	16735	16735		40.778	3.6191	1	89711			29122	5749	19738	19810	29511	29511					-0.004139632766282375
PDPEVLCPPK	10	Unmodified	_PDPEVLCPPK_					0	0	0		ENST00000607001.1_1_5:72793842-72794073:-|nuORF	ENST00000607001.1_1_5:72793842-72794073:-|nuORF	ENST00000607001.1_1_5:72793842-72794073:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7830810546875	2	547.781167	1093.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.311	1	27.311	26.811	27.811	0								0	0	0	0.27541	1	9760	9760		54.776	1.4249	1				29123	11089	19739	19811	29512	29512					0.004749635057123669
PDPGPGAPL	9	Unmodified	_PDPGPGAPL_					0	0	0			REV__ENST00000601322.5_2_19:6436333-6444241:-|nuORF	REV__ENST00000601322.5_2_19:6436333-6444241:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.7131042480469	2	410.713611	819.412668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.374	1	43.374	42.874	43.874	0								0	0	0	0.28164	1	16968	16968		38.806	5.2906	1		+		29124	18056	19740	19812	29513	29513					-0.004261485737060866
PDPLPPSQFP	10	Unmodified	_PDPLPPSQFP_					0	0	0			REV__ENST00000392133.7_1_2:217070291-217070480:+|nuORF	REV__ENST00000392133.7_1_2:217070291-217070480:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7826538085938	2	547.779482	1093.54441	1.8121	0.00099262	3.0466	0.0016689	4.8587	0.0026615	547.7805151882064	27.313	0.31802	27.313	27.104	27.422	0					10	6	2	0	0	0	0.17315	1	9895	9895		82.75	7.7072	1	555490	+		29125	18819	19741	19813	29514	29514					0.0013803672338781325
PDPQSLGDPL	10	Unmodified	_PDPQSLGDPL_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7592163085938	2	519.758746	1037.50294	1.6138	0.00083877	0.41964	0.00021811	2.0334	0.0010569	519.758669711526	39.743	0.19226	39.743	39.643	39.835	0					7	4	2	0	0	0	0.34667	1	15742	15742		62.107	4.2961	1	141380	+		29126	15449	19742	19814	29515	29515					-0.014311440359733751
PDRELLHRI	9	Unmodified	_PDRELLHRI_					0	0	0			REV__ENST00000472324.5_1_X:152935914-152936728:-|nuORF	REV__ENST00000472324.5_1_X:152935914-152936728:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.5544738769531	3	383.556007	1147.64619	0.32639	0.00012519	-3.4773	-0.0013337	-3.1509	-0.0012085	383.55458957468096	25.297	0.27069	25.297	25.188	25.459	0					11	5	3	0	0	0	0.40353	1	8977	8977		41.427	2.1738	1	341610	+		29127	14599	19743	19815	29516	29516					0.07827327865788902
PDSAETERL	9	Unmodified	_PDSAETERL_					0	0	0			REV__nc|ENSG00000142765|Q8IYJ3-2|SYTL1	REV__nc|ENSG00000142765|Q8IYJ3-2|SYTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.24566650390625	2	509.246003	1016.47745	-0.10619	-5.4077E-05	0.056626	2.8837E-05	-0.049565	-2.5241E-05	509.24585855423896	25.925	0.33429	25.925	25.699	26.034	0					13	7	2	0	0	0	0.19605	1	7815	7815		62.107	10.772	1	95707	+		29128	21047	19744	19816	29517	29517					-0.030126185583753795
PDSRGPAL	8	Unmodified	_PDSRGPAL_					0	0	0		ENSG00000186907|ENST00000335099|RTN4RL2	ENSG00000186907|ENST00000335099|RTN4RL2	ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.71661376953125	2	406.716685	811.418816	-0.5429	-0.00022081	0.091906	3.738E-05	-0.45099	-0.00018343	406.71674620869845	24.169	0.17897	24.169	24.041	24.22	0					9	4	3	0	0	0	0.60719	1	8090	8090		47.916	7.343	1	273820			29129	7171	19745	19817	29518	29518					0.0055636965781786785
PDSRPQLTPN	10	Unmodified	_PDSRPQLTPN_					0	0	0			REV__ENSG00000175514|ENST00000312457|GPR152	REV__ENSG00000175514|ENST00000312457|GPR152	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.787353515625	2	562.78837	1123.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.69	1	42.69	42.19	43.19	0								0	0	0	0.34115	1	16153	16153		44.377	8.7589	1		+		29130	16617	19746	19818	29519	29519					0.005347519782390009
PDVGYTELTQA	11	Unmodified	_PDVGYTELTQA_					0	0	0			REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.2858276367188	2	597.287868	1192.56118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.765	1	28.765	28.265	29.265	0								0	0	0	0.39048	1	9591	9591		39.253	5.0803	1		+		29131	16440	19747	19819	29520	29520					-0.027395071813316463
PDVRSLNI	8	Unmodified	_PDVRSLNI_					0	0	0			REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2581787109375	2	457.258717	912.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.062	1	27.062	26.562	27.562	0								0	0	0	1.7419	1	9762	9762		32.812	0	1		+		29132	13967	19748	19820	29521	29521					0.04312900754700877
PDVVVSAIW	9	Unmodified	_PDVVVSAIW_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.1837158203125	3	329.183287	984.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.227	1	47.227	46.727	47.727	0								0	0	0	0.37146	1	18873	18873		14.137	3.8719	1				29133	1637	19749	19821	29522	29522					0.035149555572729696
PEAADDSFKLR	11	Unmodified	_PEAADDSFKLR_					0	0	0			REV__BICD2|p.G282R|1|0.18|ENSG00000185963|chr9:92720518-92720518|C/G|missense_variant	REV__BICD2|p.G282R|1|0.18|ENSG00000185963|chr9:92720518-92720518|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	624.8134155273438	2	624.814584	1247.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.724	1	17.724	17.224	18.224	0								0	0	0	0.45674	1	4284	4284		8.6937	1.5003	1		+		29134	12286	19750	19822	29523	29523					0.0007129032117063616
PEAGGPPIKK	10	Unmodified	_PEAGGPPIKK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6919676-6920027:+|nuORF;ENST00000547709.1_1_17:6919595-6920637:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18;ENST00000547709.1_1_17:6919595-6920637:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.28997802734375	2	497.290017	992.565481	-1.1467	-0.00057025	0.81615	0.00040586	-0.33056	-0.00016438	497.29030560495147	21.006	0.32657	21.006	20.841	21.168	0					21	10	3	0	0	0	0.46128	1	5983	5983		49.536	3.5841	1	137660			29135	8036;10591	19751	19823	29524	29524					0.06890046822900331
PEAQWHSSL	9	Unmodified	_PEAQWHSSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7529296875	2	527.751256	1053.48796	-1.1954	-0.00063089	3.5178	0.0018565	2.3224	0.0012256	527.753084327336	26.378	0.27625	26.378	26.276	26.552	0					9	6	2	0	0	0	0.37197	1	8494	8494		44.117	8.9161	1	85675			29136	6178	19752	19824	29525	29525					-0.03664591113283677
PEASRPALEM	10	Unmodified	_PEASRPALEM_					0	0	0			REV__PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant	REV__PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.775390625	2	550.773874	1099.53319	3.7317	0.0020554	0.59619	0.00032837	4.3279	0.0023837	550.77412978135	45.173	0.20436	45.173	45.122	45.327	0					13	9	2	0	0	0	0.56931	1	18099	18099		37.812	1.3648	1	103370	+		29137	17735	19753	19825	29526	29526					-0.012591086424208697
PECQRLLPPWP	11	Unmodified	_PECQRLLPPWP_					0	0	0		TP53|p.P60Qfs*63|1|0.38|ENSG00000141510|chr17:7676190-7676190|G/-|frameshift_variant	TP53|p.P60Qfs*63|1|0.38|ENSG00000141510|chr17:7676190-7676190|G/-|frameshift_variant	TP53|p.P60Qfs*63|1|0.38|ENSG00000141510|chr17:7676190-7676190|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	668.348388671875	2	668.34754	1334.68053	2.2646	0.0015136	-0.47949	-0.00032046	1.7851	0.0011931	668.3471919525317	34.416	0.3217	34.416	34.336	34.657	0					20	8	4	0	0	0	0.65907	1	13277	13277		31.53	1.2121	1	259010			29138	22558	19754	19826	29527	29527					0.026574079623969737
PEDKNPFKEK	10	Unmodified	_PEDKNPFKEK_					0	0	0		ENSG00000167083|ENST00000507680|GNGT2;ENSG00000127920|ENST00000248564|GNG11	ENSG00000167083|ENST00000507680|GNGT2	ENSG00000167083|ENST00000507680|GNGT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.3191528320312	2	616.319502	1230.62445	0.29994	0.00018486	-0.65894	-0.00040612	-0.359	-0.00022126	616.3190964509253	12.971	0.27343	12.971	12.87	13.144	0					14	6	3	0	0	0	0.53919	1	3053	3053		22.58	0	1	662580			29139	3519	19755	19827	29528	29528					0.018364783265724327
PEEEPSTTLV	10	Unmodified	_PEEEPSTTLV_					0	0	0		nc|ENSG00000016402|Q9UHF4-2|IL20RA;nc|ENSG00000016402|Q9UHF4-3|IL20RA;ENSG00000016402|ENST00000316649|IL20RA	nc|ENSG00000016402|Q9UHF4-2|IL20RA	nc|ENSG00000016402|Q9UHF4-2|IL20RA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.26904296875	2	551.269144	1100.52373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.452	1	11.452	10.952	11.952	0								0	0	0	0.4201	1	2210	2210		15.642	0.77694	1				29140	1084	19756	19828	29529	29529					-0.022505984469717077
PEELKPNP	8	Unmodified	_PEELKPNP_					0	0	0			REV__ENST00000392510.3_1_14:106138974-106139307:-|nuORF	REV__ENST00000392510.3_1_14:106138974-106139307:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.24493408203125	2	462.245275	922.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.248	1	32.248	31.748	32.748	0								0	0	0	1.7419	1	10750	10750		33.516	0	1		+		29141	18828	19757	19829	29530	29530					0.011657921435130447
PEERPKAL	8	Unmodified	_PEERPKAL_					0	0	0		ENST00000473501.1_1_3:196753297-196754890:-|nuORF	ENST00000473501.1_1_3:196753297-196754890:-|nuORF	ENST00000473501.1_1_3:196753297-196754890:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.26654052734375	2	470.266542	938.51853	-0.12529	-5.8918E-05	-0.59292	-0.00027883	-0.7182	-0.00033775	470.2665279844541	32.334	0.23388	32.334	32.242	32.476	0					11	5	3	0	0	0	0.64096	1	12290	12290		42.474	1.6963	1	126170			29142	9876	19758	19830	29531	29531					0.0468118727176261
PEERPPGLPL	10	Unmodified	_PEERPPGLPL_					0	0	0		PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant;PRRC2A|p.K1685Rfs*9|1|0.21|ENSG00000204469|chr6:31634864-31634864|C/-|frameshift_variant;PRRC2A|p.G1731Wfs*35|1|0.59|ENSG00000204469|chr6:31635155-31635156|-/C|frameshift_variant;PRRC2A|p.G1884Afs*12|1|0.18|ENSG00000204469|chr6:31636228-31636228|C/-|frameshift_variant;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.87408447265625	3	368.873113	1103.59751	-0.1117	-4.1202E-05	1.7248	0.00063624	1.6131	0.00059504	368.87366519849274	28.562	0.17394	28.562	28.477	28.651	0					6	4	2	0	0	0	0.49411	1	9506	9506		45.972	6.7194	1	98674			29143	7704	19759	19831	29532	29532					0.04985414506040797
PEFQAAKVPDT	11	Unmodified	_PEFQAAKVPDT_					0	0	0			REV__ENST00000537821.2_1_1:161482968-161571037:+|nuORF	REV__ENST00000537821.2_1_1:161482968-161571037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.8060302734375	2	601.806228	1201.5979	0.46249	0.00027833	0.18258	0.00010988	0.64507	0.0003882	601.806369048768	29.596	0.74307	29.596	29.415	30.158	0					45	19	3	0	0	0	0.69524	1	10127	10127		28.081	0	1	469450	+		29144	15178	19760	19832	29533	29533					0.005167894352325675
PEGENSHDKSG	11	Unmodified	_PEGENSHDKSG_					0	0	0		MORC4|p.S616G|1|0.29|ENSG00000133131|chrX:106943045-106943045|T/C|missense_variant	MORC4|p.S616G|1|0.29|ENSG00000133131|chrX:106943045-106943045|T/C|missense_variant	MORC4|p.S616G|1|0.29|ENSG00000133131|chrX:106943045-106943045|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.7470703125	2	578.746899	1155.47924	-0.054649	-3.1628E-05	0.8156	0.00047203	0.76095	0.0004404	578.7470130255786	16.53	0.34208	16.53	16.438	16.78	0					15	8	3	0	0	0	0.32407	1	4504	4504		59.931	5.1545	1	828970			29145	11372	19761	19833	29534	29534					-0.09227609540425874
PEGLLFVSAG	10	Unmodified	_PEGLLFVSAG_					0	0	0		ENST00000507621.1_1_5:148743537-148743774:+|nuORF;ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000507621.1_1_5:148743537-148743774:+|nuORF	ENST00000507621.1_1_5:148743537-148743774:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2691650390625	2	495.26875	988.522947	-0.65874	-0.00032625	2.1831	0.0010812	1.5244	0.00075498	495.2693612666279	17.743	0.31086	17.743	17.683	17.994	0					11	6	3	0	0	0	0.58896	1	5189	5189		35.618	3.6634	1	189170			29146	10165	19762	19834	29535	29535					0.028226516946688207
PEGLVEFEAQ	10	Unmodified	_PEGLVEFEAQ_					0	0	0		sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1;sp|F5HA93|TRX1_HCMVMTriplexcapsidprotein1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRX1PE=3SV=1	sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.772705078125	2	559.771854	1117.52915	1.7832	0.00099819	0.20015	0.00011204	1.9834	0.0011102	559.7718319553559	30.246	0.18151	30.246	30.136	30.317	0					8	4	2	0	0	0	0.57211	1	11290	11290		37.508	3.3356	1	265180			29147	22437	19763	19835	29536	29536					-0.024908748644747902
PEGRFHFAI	9	Unmodified	_PEGRFHFAI_					0	0	0		OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant;OPLAH|p.H870Tfs*28|1|0.64|ENSG00000178814|chr8:144054639-144054639|G/-|frameshift_variant;ENSG00000178814|ENST00000618853|OPLAH	OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant	OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2815551757812	2	537.279983	1072.54541	3.3417	0.0017955	-0.22419	-0.00012045	3.1176	0.001675	537.2799135983597	12.519	0.14038	12.519	12.472	12.612	0					7	3	3	0	0	0	0.50461	1	2693	2693		31.955	2.8053	1	799230			29148	6731	19764	19836	29537	29537					0.012042958829397321
PEILLIDFD	9	Unmodified	_PEILLIDFD_					0	0	0			REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8618469238281	3	358.862102	1073.56448	0.48439	0.00017383	-0.30734	-0.00011029	0.17705	6.3537E-05	358.861889331759	33.081	0.40686	33.081	33.009	33.415	0					18	11	3	0	0	0	0.5879	1	12210	12210		17.468	0	1	265970	+		29149	21793	19765	19837	29538	29538					0.030637876633363703
PEKQGEIE	8	Unmodified	_PEKQGEIE_					0	0	0		nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;DMD|p.K2329Sfs*9|1|0.33|ENSG00000198947|chrX:31875300-31875300|T/-|frameshift_variant	nc|ENSG00000198947|P11532-3|DMD	nc|ENSG00000198947|P11532-3|DMD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2317810058594	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.363	1	44.363	43.863	44.863	0								0	0	0	1.7419	1	17772	17772		25.45	2.4077	1				29150	803	19766	19838	29539	29539					-0.01691102098754982
PEKQKPKVV	9	Unmodified	_PEKQKPKVV_					0	0	0		ENSG00000166152|ENST00000299191|C16orf78	ENSG00000166152|ENST00000299191|C16orf78	ENSG00000166152|ENST00000299191|C16orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.5535583496094	3	351.553603	1051.63898	0.50762	0.00017845	-0.60233	-0.00021175	-0.094716	-3.3298E-05	351.5533662897703	13.632	0.37066	13.632	13.364	13.735	0					21	8	4	0	0	0	0.61124	1	3325	3325		30.318	19.221	1	1035300			29151	5863	19767	19839	29540	29540					0.11522595265364544
PELFDKVM	8	Unmodified	_PELFDKVM_					0	0	0			REV__ZPBP2|p.T125Qfs*32|1|0.39|ENSG00000186075|chr17:39871587-39871587|A/-|frameshift_variant	REV__ZPBP2|p.T125Qfs*32|1|0.39|ENSG00000186075|chr17:39871587-39871587|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7499694824219	2	489.751879	977.489204	0.60387	0.00029575	-4.4815	-0.0021948	-3.8776	-0.0018991	489.7496569237412	45.44	0.10247	45.44	45.369	45.472	0					9	6	2	0	0	0	0.61938	1	17573	17573		45.952	3.4775	1	56249	+		29152	17065	19768	19840	29541	29541					-0.00044093068731854146
PELFFLFL	8	Unmodified	_PELFFLFL_					0	0	0		ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2876586914062	2	513.288954	1024.56336	-1.6621	-0.00085311	-1.0575	-0.00054278	-2.7195	-0.0013959	513.2883123167792	37.538	0.45665	37.538	37.384	37.841	0					32	22	2	0	0	0	0.75243	1	13426	13426		26.796	1.3459	1	54015			29153	10488	19769	19841	29542	29542					0.0520561808509683
PELGFQPD	8	Unmodified	_PELGFQPD_					0	0	0		ENST00000486536.6_1_22:20720872-20720941:-|nuORF	ENST00000486536.6_1_22:20720872-20720941:-|nuORF	ENST00000486536.6_1_22:20720872-20720941:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.71661376953125	2	451.71635	901.418148	-0.012986	-5.8661E-06	0.49021	0.00022144	0.47723	0.00021557	451.7165094954351	23.726	0.28264	23.726	23.622	23.905	0					17	10	3	0	0	0	0.5676	1	6910	6910		53.351	2.016	1	365710			29154	10025	19770	19842	29543	29543					-0.036504697819054854
PELICDDVDE	10	Unmodified	_PELICDDVDE_					0	0	0			REV__THBD|p.P496Rfs*10|1|0.4|ENSG00000178726|chr20:23048018-23048018|G/-|frameshift_variant	REV__THBD|p.P496Rfs*10|1|0.4|ENSG00000178726|chr20:23048018-23048018|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.2454223632812	2	574.244812	1146.47507	0.60647	0.00034826	-0.80909	-0.00046462	-0.20262	-0.00011636	574.2446311032878	29.966	0.21177	29.966	29.865	30.077	0					10	5	3	0	0	0	0.70877	1	10141	10141		20.947	1.587	1	91267	+		29155	16743	19771	19843	29544	29544					-0.092308350783469
PELPTRDVV	9	Unmodified	_PELPTRDVV_					0	0	0			REV__ENST00000453174.7_2_10:81666360-81667538:+|nuORF	REV__ENST00000453174.7_2_10:81666360-81667538:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2853393554688	2	513.284931	1024.55531	-0.25275	-0.00012973	0.80577	0.00041359	0.55302	0.00028386	513.2855778801885	32.361	0.21671	32.361	32.252	32.469	0					12	9	2	0	0	0	0.42902	1	10791	10791		39.253	2.0937	1	62005	+		29156	12290	19772	19844	29545	29545					0.044014390976599316
PEMVVKTVV	9	Unmodified	_PEMVVKTVV_					0	0	0			REV__ENST00000462744.5_1_1:59762566-59797652:+|nuORF	REV__ENST00000462744.5_1_1:59762566-59797652:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2908020019531	2	501.288628	1000.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.986	1	12.986	12.486	13.486	0								0	0	0	0.33029	1	2573	2573		15.642	12.232	1		+		29157	19390	19773	19845	29546	29546					0.06244455373735036
PEPCLDALMG	10	Unmodified	_PEPCLDALMG_					0	0	0		RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2402954101562	2	523.238278	1044.462	3.4144	0.0017866	0.72269	0.00037814	4.1371	0.0021647	523.2386302526875	11.897	1.3173	11.897	11.778	13.095	0					96	35	5	0	0	0	0.58896	1	2362	2362		35.618	2.1027	1	34239000			29158	12005	19774	19846	29547	29547					-0.05844944671457597
PEPEGTLPA	9	Unmodified	_PEPEGTLPA_					0	0	0		ENSG00000154099|ENST00000378553|DNAAF1;nc|ENSG00000154099|Q8NEP3-2|DNAAF1	ENSG00000154099|ENST00000378553|DNAAF1	ENSG00000154099|ENST00000378553|DNAAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.7298278808594	2	455.729458	909.444362	0.147	6.6993E-05	0.72555	0.00033065	0.87255	0.00039765	455.729778363059	27.336	0.13821	27.336	27.249	27.388	0					5	3	2	0	0	0	0.55282	1	8943	8943		26.796	0	1	37756			29159	5074	19775	19847	29548	29548					-0.013982006104242828
PEPGEPEER	9	Unmodified	_PEPGEPEER_					0	0	0		ENST00000391839.6_1_1:244998983-245005526:+|nuORF;ENST00000498262.1_1_1:244998983-245005526:+|nuORF;ENSG00000203667|ENST00000411948|COX20;nc|ENSG00000203667|Q5RI15-2|COX20	ENST00000391839.6_1_1:244998983-245005526:+|nuORF	ENST00000391839.6_1_1:244998983-245005526:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2384033203125	2	520.238178	1038.4618	1.4332	0.00074561	-0.82052	-0.00042686	0.61269	0.00031875	520.237777290758	24.493	0.36149	24.493	24.265	24.627	0					26	8	4	0	0	0	0.39215	1	8248	8248		42.396	4.5846	1	1826600			29160	7651	19776	19848	29549	29549					-0.05588905075433104
PEPQQTAL	8	Unmodified	_PEPQQTAL_					0	0	0		ENST00000469133.1_1_7:24747667-24749942:-|nuORF;nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	ENST00000469133.1_1_7:24747667-24749942:-|nuORF	ENST00000469133.1_1_7:24747667-24749942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2294616699219	2	442.229625	882.444697	0.57414	0.0002539	-0.91992	-0.00040681	-0.34578	-0.00015291	442.2291794094677	31.416	0.25275	31.416	31.331	31.584	0					13	6	3	0	0	0	0.52345	1	11443	11443		57.811	1.0902	1	383530			29161	2407	19777	19849	29550	29550					-0.0012278089058099795
PEQDRLLQ	8	Unmodified	_PEQDRLLQ_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7671813964844	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.441	1	15.441	14.941	15.941	0								0	0	0	1.7419	1	3465	3465		29.15	0	1				29162	9	19778	19850	29551	29551					0.020399819208023473
PEQKNKGK	8	Unmodified	_PEQKNKGK_					0	0	0		ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.76458740234375	2	464.764166	927.513779	0.084603	3.932E-05	0.055338	2.5719E-05	0.13994	6.504E-05	464.764298859182	16.392	0.29664	16.392	16.252	16.549	0					20	11	2	0	0	0	0.75243	1	3687	3687		26.796	4.8362	1	117450			29163	6208	19779	19851	29552	29552					0.04712303128997064
PEQRAKAY	8	Unmodified	_PEQRAKAY_					0	0	0			REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7558898925781	2	481.756341	961.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.149	1	17.149	16.649	17.649	0								0	0	0	1.7419	1	5042	5042		35.618	2.1027	1		+		29164	17113	19780	19852	29553	29553					0.015840166119346577
PERAERAPLG	10	Unmodified	_PERAERAPLG_					0	0	0			REV__ENST00000382592.4_1_13:21635502-21635673:-|nuORF	REV__ENST00000382592.4_1_13:21635502-21635673:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.3011474609375	2	548.298904	1094.58326	3.8171	0.0020929	0.47128	0.0002584	4.2884	0.0023513	548.2991709500222	20.319	0.31554	20.319	20.26	20.575	0					13	6	3	0	0	0	0.28036	1	6446	6446		69.628	5.4204	1	1346800	+		29165	18798	19781	19853	29554	29554					0.039747620777461634
PEREQHWRLIR	11	Unmodified	_PEREQHWRLIR_					0	0	0			REV__CON__Q99PS0	REV__CON__Q99PS0	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	760.4169311523438	2	760.415666	1518.81678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.719	1	35.719	35.219	36.219	0								0	0	0	0.45674	1	13862	13862		13.454	1.2474	1		+	+	29166	12617	19782	19854	29555	29555					0.0781223851724917
PESHEASEL	9	Unmodified	_PESHEASEL_					0	0	0			REV__ENSG00000125534|ENST00000370179|PPDPF	REV__ENSG00000125534|ENST00000370179|PPDPF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7233581542969	2	499.724904	997.435254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.987	1	48.987	48.487	49.487	0								0	0	0	0.31623	1	18473	18473		31.955	2.8053	1		+		29167	14435	19783	19855	29556	29556					-0.06356593966756918
PESSLPFSF	9	Unmodified	_PESSLPFSF_					0	0	0			REV__ENSG00000175899|ENST00000318602|A2M	REV__ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.74273681640625	2	505.745108	1009.47566	-0.74934	-0.00037898	-2.8569	-0.0014449	-3.6063	-0.0018238	505.74350307138315	34.689	0.15556	34.689	34.593	34.749	0					12	7	2	0	0	0	0.25109	1	11721	11721		55.504	9.5523	1	62011	+		29168	16636	19784	19856	29557	29557					-0.028696275763195445
PETISAFT	8	Unmodified	_PETISAFT_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2177734375	2	433.218726	864.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.005	1	13.005	12.505	13.505	0								0	0	0	1.7419	1	2862	2862		60.294	15.763	1				29169	5037	19785	19857	29558	29558					-0.014735856391439484
PEVNQNNSKS	10	Unmodified	_PEVNQNNSKS_					0	0	0			REV__nc|ENSG00000114790|Q96DR7-3|ARHGEF26	REV__nc|ENSG00000114790|Q96DR7-3|ARHGEF26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7682495117188	2	558.767634	1115.52072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.179	1	11.179	10.679	11.679	0								0	0	0	0.4201	1	2138	2138		14.137	0.68308	1		+		29170	12215	19786	19858	29559	29559					-0.03242428781095441
PEVTGTHK	8	Unmodified	_PEVTGTHK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant;FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.7284240722656	2	434.729792	867.445031	0.81797	0.00035559	-1.4241	-0.00061909	-0.60612	-0.0002635	434.72932340279226	25.003	1.0059	25.003	24.661	25.667	0					52	20	4	0	0	0	0.63077	1	8856	8856		44.117	5.3107	1	7263300			29171	7403	19787	19859	29560	29560					0.006006388292803422
PEVVAHYLAQ	10	Unmodified	_PEVVAHYLAQ_					0	0	0			REV__ENSG00000100249|ENST00000216071|C22orf31	REV__ENSG00000100249|ENST00000216071|C22orf31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.7958374023438	2	563.798206	1125.58186	0.9727	0.00054841	-1.2353	-0.00069645	-0.26258	-0.00014804	563.7963283505343	34.99	0.21754	34.99	34.83	35.048	0					5	4	2	0	0	0	0.62235	1	13481	13481		31.53	2.3598	1	85674	+		29172	13526	19788	19860	29561	29561					0.024091279889717043
PEYFRRKL	8	Unmodified	_PEYFRRKL_					0	0	0		ENSG00000005100|ENST00000225296|DHX33;ENST00000575153.5_1_17:5347527-5364435:-|nuORF;nc|ENSG00000005100|Q9H6R0-2|DHX33	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.8165893554688	2	554.816733	1107.61891	-1.0927	-0.00060626	0.99018	0.00054937	-0.10255	-5.6894E-05	554.8173247995059	31.029	0.27302	31.029	30.891	31.164	0					18	7	4	0	0	0	0.53424	1	10624	10624		55.504	55.504	1	628070			29173	953	19789	19861	29562	29562					0.06940844325413309
PFAGGPGRGGY	11	Unmodified	_PFAGGPGRGGY_					0	0	0			REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF	REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2566528320312	2	518.253966	1034.49338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.789	1	36.789	36.289	37.289	0								0	0	0	0.44116	1	13173	13173		27.882	3.6795	1		+		29174	18824	19790	19862	29563	29563					-0.022488675308068196
PFAMHPYPY	9	Unmodified	_PFAMHPYPY_					0	0	0		ENSG00000171532|ENST00000302584|NEUROD2	ENSG00000171532|ENST00000302584|NEUROD2	ENSG00000171532|ENST00000302584|NEUROD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.758544921875	2	561.757495	1121.50044	1.789	0.001005	2.9275	0.0016445	4.7165	0.0026495	561.7591264009676	34.589	0.75513	34.589	34.067	34.822	0					25	19	2	0	0	0	0.43174	1	12851	12851		39.021	1.21	1	52397			29175	6305	19791	19863	29564	29564					-0.055452709746077744
PFANGNEKL	9	Unmodified	_PFANGNEKL_					0	0	0			REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.25738525390625	2	495.256174	988.497795	2.8303	0.0014017	-0.20822	-0.00010312	2.6221	0.0012986	495.2560615378446	40.878	0.37379	40.878	40.687	41.06	0					12	6	3	0	0	0	0.42902	1	16229	16229		39.253	1.4413	1	358390	+		29176	17209	19792	19864	29565	29565					0.0030859689210274155
PFATLNSFSPQ	11	Unmodified	_PFATLNSFSPQ_					0	0	0			REV__nc|ENSG00000213676|Q99941-2|ATF6B	REV__nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.7991333007812	2	604.800946	1207.58734	-1.9124	-0.0011566	-0.56194	-0.00033986	-2.4743	-0.0014965	604.8005652310576	30.983	0.17862	30.983	30.891	31.07	0					7	4	2	0	0	0	0.63398	1	10626	10626		33.922	2.3918	1	116120	+		29177	17565	19793	19865	29566	29566					-0.008151932191822198
PFDPGILQIP	10	Unmodified	_PFDPGILQIP_					0	0	0		ENST00000578774.1_1_17:38520220-38520388:+|nuORF	ENST00000578774.1_1_17:38520220-38520388:+|nuORF	ENST00000578774.1_1_17:38520220-38520388:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.2059020996094	3	366.206092	1095.59645	0.48095	0.00017613	-0.39968	-0.00014637	0.081268	2.9761E-05	366.2058982672768	26.803	0.65875	26.803	26.493	27.152	0					37	13	4	0	0	0	0.7005	1	9574	9574		20.837	0	1	2534100			29178	10856	19794	19866	29567	29567					0.052472001371370425
PFEKTGVNL	9	Unmodified	_PFEKTGVNL_					0	0	0			REV__CHRD|p.D509E|1|0.4|ENSG00000090539|chr3:184384623-184384623|C/A|missense_variant	REV__CHRD|p.D509E|1|0.4|ENSG00000090539|chr3:184384623-184384623|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.77435302734375	2	502.7742	1003.53385	-2.0621	-0.0010367	1.7644	0.0008871	-0.29765	-0.00014965	502.77531618896904	34.786	0.59696	34.786	34.595	35.192	0					34	19	3	0	0	0	0.30841	1	12305	12305		34.173	13.226	1	464980	+		29179	12490	19795	19867	29568	29568					0.032220540689422705
PFFFFAAICL	10	Unmodified	_PFFFFAAICL_					0	0	0		ENST00000485978.1_1_9:136337145-136339092:-|nuORF;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6	ENST00000485978.1_1_9:136337145-136339092:-|nuORF	ENST00000485978.1_1_9:136337145-136339092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.5364685058594	3	392.536785	1174.58852	0.40915	0.00016061	-1.5385	-0.00060392	-1.1293	-0.00044331	392.53625870283395	36.191	0.42976	36.191	36.079	36.509	0					25	12	3	0	0	0	0.62235	1	14066	14066		31.53	4.4825	1	200970			29180	5359	19796	19868	29569	29569					0.008213496160124123
PFFSKEQPQAL	11	Unmodified	_PFFSKEQPQAL_					0	0	0		nc|ENSG00000142606|Q495T6-3|MMEL1;ENSG00000142606|ENST00000378412|MMEL1	nc|ENSG00000142606|Q495T6-3|MMEL1	nc|ENSG00000142606|Q495T6-3|MMEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	646.3382568359375	2	646.337695	1290.66084	-2.3356	-0.0015096	2.718	0.0017567	0.38238	0.00024715	646.3395772247793	20.817	0.21916	20.817	20.725	20.944	0					8	5	2	0	0	0	0.3077	1	5934	5934		29.17	0	1	344180			29181	4500	19797	19869	29570	29570					0.02713355223295366
PFFSWFKKL	9	Unmodified	_PFFSWFKKL_					0	0	0			REV__ENST00000468146.5_1_3:52720039-52723083:+|nuORF	REV__ENST00000468146.5_1_3:52720039-52723083:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.32958984375	2	600.334227	1198.6539	-1.8662	-0.0011203	-4.2926	-0.002577	-6.1588	-0.0036973	600.3317277356134	32.846	0.17661	32.846	32.751	32.927	0					7	4	2	0	0	0	0.30951	1	11456	11456		49.442	16.629	1	65052	+		29182	19437	19798	19870	29571	29571					0.06252087133384521
PFFYMPNK	8	Unmodified	_PFFYMPNK_					0	0	0			REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2540893554688	2	522.254588	1042.49462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.287	1	16.287	15.787	16.787	0								0	0	0	1.7419	1	3829	3829		24.504	5.4005	1		+		29183	14104	19799	19871	29572	29572					-0.024923694862764023
PFGLTSKLAK	10	Unmodified	_PFGLTSKLAK_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.3199462890625	2	531.321317	1060.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.465	1	53.465	52.965	53.965	0								0	0	0	0.4201	1	18813	18813		21.96	1.013	1		+		29184	13022	19800	19872	29573	29573					0.1001919289108173
PFHAGAGDLSF	11	Unmodified	_PFHAGAGDLSF_					0	0	0			REV__nc|ENSG00000113621|Q96J42-2|TXNDC15	REV__nc|ENSG00000113621|Q96J42-2|TXNDC15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.767578125	2	559.766906	1117.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.806	1	34.806	34.306	35.306	0								0	0	0	0.24455	1	13444	13444		58.782	0.55203	1		+		29185	14049	19801	19873	29574	29574					-0.03480018079198999
PFHTSTEMF	9	Unmodified	_PFHTSTEMF_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;DHRS3|p.G229D|1|0.1|ENSG00000162496|chr1:12578730-12578730|C/T|missense_variant	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7424926757812	2	548.742042	1095.46953	0.50035	0.00027456	0.19892	0.00010916	0.69927	0.00038372	548.7420999433364	37.77	0.22085	37.77	37.662	37.882	0					19	7	3	0	0	0	0.11118	1	14329	14329		76.847	28.931	1	275400			29186	5466	19802	19874	29575	29575					-0.07438469079511378
PFHTSTEMF	9	Unmodified	_PFHTSTEMF_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;DHRS3|p.G229D|1|0.1|ENSG00000162496|chr1:12578730-12578730|C/T|missense_variant	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7423706054688	2	548.742042	1095.46953	1.7622	0.00096701	-1.5205	-0.00083434	0.24178	0.00013267	548.741250746802	37.76	0.34313	37.76	37.62	37.964	0					23	11	3	0	0	0	0.068692	1	14765	14765		88.643	24.436	1	376720			29187	5466	19802	19874	29576	29576					-0.07438469079511378
PFILAVEHD	9	Unmodified	_PFILAVEHD_					0	0	0			REV__ENSG00000104047|ENST00000403028|DTWD1	REV__ENSG00000104047|ENST00000403028|DTWD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7755126953125	2	520.7742	1039.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.692	1	11.692	11.192	12.192	0								0	0	0	0.39802	1	2304	2304		11.511	1.2458	1		+		29188	13705	19803	19875	29577	29577					0.01566054068939593
PFKEPWPSP	9	Unmodified	_PFKEPWPSP_					0	0	0			REV__XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant	REV__XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.1856994628906	3	362.18692	1083.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.565	1	29.565	29.065	30.065	0								0	0	0	0.3119	1	9344	9344		32.812	4.7309	1		+		29189	14067	19804	19876	29578	29578					0.0005035793155911961
PFLEFFGK	8	Unmodified	_PFLEFFGK_					0	0	0			REV__nc|ENSG00000123992|Q9ULA0-2|DNPEP	REV__nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7604675292969	2	492.763104	983.511654	-2.6098	-0.001286	-1.6152	-0.00079592	-4.2251	-0.002082	492.7622345271002	37.917	0.19435	37.917	37.834	38.029	0					23	9	4	0	0	0	0.44433	1	13555	13555		65.803	21.272	1	258880	+		29190	14371	19805	19877	29579	29579					0.019238743911841993
PFLGVPSA	8	Unmodified	_PFLGVPSA_					0	0	0		nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11;nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11;ENST00000466827.1_1_1:877519-877869:+|nuORF	nc|ENSG00000187634|Q96NU1-1|SAMD11	nc|ENSG00000187634|Q96NU1-1|SAMD11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	263.14923095703125	3	263.149807	786.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.309	1	45.309	44.809	45.809	0								0	0	0	1.7419	1	14602	14602		11.511	4.3177	1				29191	7207	19806	19878	29580	29580					0.025833432942818035
PFLHEKDVQA	10	Unmodified	_PFLHEKDVQA_					0	0	0			REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.3072509765625	2	592.308938	1182.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.752	1	17.752	17.252	18.252	0								0	0	0	0.38467	1	4492	4492		17.468	0	1		+		29192	14350	19807	19879	29581	29581					0.019325130177094252
PFLPAVAGQGL	11	Unmodified	_PFLPAVAGQGL_					0	0	0			REV__ENST00000546023.1_1_6:160210218-160210626:-|nuORF	REV__ENST00000546023.1_1_6:160210218-160210626:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.3046264648438	2	535.305667	1068.59678	-1.3579	-0.00072689	-1.0759	-0.00057592	-2.4338	-0.0013028	535.3050102477132	36.774	0.2972	36.774	36.677	36.974	0					18	13	2	0	0	0	0.52516	1	13177	13177		42.396	6.7778	1	78099	+		29193	20166	19808	19880	29582	29582					0.06522619856991696
PFLPHEGASV	10	Unmodified	_PFLPHEGASV_					0	0	0			REV__ENST00000563115.5_1_16:57496627-57503283:+|nuORF	REV__ENST00000563115.5_1_16:57496627-57503283:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.8503112792969	3	351.850308	1052.5291	0.50707	0.00017841	-0.29334	-0.00010321	0.21373	7.52E-05	351.85012843033047	24.485	0.31835	24.485	24.326	24.645	0					17	6	4	0	0	0	0.65213	1	8585	8585		20.03	20.03	1	1837300	+		29194	20314	19809	19881	29583	29583					0.0049316992619878874
PFLPLTWP	8	Unmodified	_PFLPLTWP_					0	0	0		nc|nan|Q96N68|C18orf15	nc|nan|Q96N68|C18orf15	nc|nan|Q96N68|C18orf15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2725830078125	2	485.773471	969.53239	-0.08916	-4.3312E-05	2.0492	0.00099543	1.96	0.00095212	485.77480208475663	19.042	0.48634	19.042	18.711	19.197	0					22	10	3	0	0	0	0.72381	1	5843	5843		20.482	0	1	483570			29195	11841	19810	19882	29584	29584					0.04640464770852759
PFLPPRKMV	9	Unmodified	_PFLPPRKMV_					0	0	0		ENST00000428670.7_1_12:90049870-90102463:-|nuORF	ENST00000428670.7_1_12:90049870-90102463:-|nuORF	ENST00000428670.7_1_12:90049870-90102463:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.8219604492188	2	542.82043	1083.62631	2.0222	0.0010977	0.44285	0.00024039	2.465	0.0013381	542.8206727905566	36.673	0.26698	36.673	36.562	36.829	0					10	5	3	0	0	0	0.49003	1	14286	14286		33.516	6.8227	1	182280			29196	9468	19811	19883	29585	29585					0.08783860601488414
PFLSRSLPI	9	Unmodified	_PFLSRSLPI_					0	0	0		VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1;ENST00000461328.1_1_6:31750434-31752201:-|nuORF	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3095092773438	2	515.30821	1028.60187	1.502	0.00077399	1.7777	0.00091606	3.2797	0.0016901	515.3091629038538	41.086	0.60844	41.086	40.881	41.49	0					23	14	3	0	0	0	0.27249	1	16281	16281		52.937	5.2794	1	203750			29197	7698	19812	19884	29586	29586					0.08870923719609891
PFNITKFF	8	Unmodified	_PFNITKFF_					0	0	0			REV__ENSG00000114124|ENST00000682958|GRK7	REV__ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.27410888671875	2	507.276378	1012.5382	-0.37456	-0.00019001	-3.3299	-0.0016892	-3.7045	-0.0018792	507.2747971984496	44.929	0.1208	44.929	44.874	44.995	0					12	6	3	0	0	0	0.67394	1	17440	17440		37.159	2.9866	1	70134	+		29198	14066	19813	19885	29587	29587					0.032435632825240646
PFNPLFFWVKH	11	Unmodified	_PFNPLFFWVKH_					0	0	0			REV__ENST00000534358.5_2_11:118394338-118394506:+|nuORF	REV__ENST00000534358.5_2_11:118394338-118394506:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	716.382080078125	2	716.38224	1430.74993	1.4097	0.0010099	-1.8037	-0.0012922	-0.39398	-0.00028224	716.3810219234948	30.79	0.13585	30.79	30.704	30.84	0					8	4	2	0	0	0	0.78104	1	10128	10128		19.104	1.6355	1	151770	+		29199	20091	19814	19886	29588	29588					0.05178234973436702
PFPALTGSLPK	11	Unmodified	_PFPALTGSLPK_					0	0	0		ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.8291625976562	2	564.326599	1126.63865	-1.0641	-0.0006005	3.1466	0.0017757	2.0825	0.0011752	564.3283358699165	17.408	0.45378	17.408	17.328	17.781	0					19	12	2	0	0	0	0.67178	1	4325	4325		30.318	1.1682	1	146290			29200	10477	19815	19887	29589	29589					0.08039175545491162
PFPDRILMQK	10	Unmodified	_PFPDRILMQK_					0	0	0			REV__ENST00000428400.5_1_X:47082893-47085639:+|nuORF	REV__ENST00000428400.5_1_X:47082893-47085639:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.8419799804688	2	622.844633	1243.67471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.426	1	27.426	26.926	27.926	0								0	0	0	0.37702	1	9935	9935		19.104	0	1		+		29201	19134	19816	19888	29590	29590					0.06262309450698922
PFPKLVTTAG	10	Unmodified	_PFPKLVTTAG_					0	0	0		ENST00000467050.1_1_7:193951-194146:-|nuORF	ENST00000467050.1_1_7:193951-194146:-|nuORF	ENST00000467050.1_1_7:193951-194146:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.799560546875	2	515.800217	1029.58588	1.5117	0.00077973	-1.1623	-0.0005995	0.34941	0.00018023	515.7996088241878	44.468	0.72801	44.468	44.168	44.896	0					36	30	2	0	0	0	0.60076	1	17732	17732		34.173	5.0025	1	72158			29202	9796	19817	19889	29591	29591					0.07227217482704873
PFPRACQPGGA	11	Unmodified	_PFPRACQPGGA_					0	0	0		ENST00000484256.1_1_22:29191541-29191667:-|nuORF	ENST00000484256.1_1_22:29191541-29191667:-|nuORF	ENST00000484256.1_1_22:29191541-29191667:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.770263671875	2	550.768926	1099.5233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.931	1	22.931	22.431	23.431	0								0	0	0	0.45144	1	6562	6562		25.574	0.12388	1				29203	9991	19818	19890	29592	29592					-0.02248251857122341
PFQGQLDSI	9	Unmodified	_PFQGQLDSI_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7561340332031	2	502.756007	1003.49746	-0.068728	-3.4553E-05	-0.21353	-0.00010735	-0.28226	-0.00014191	502.7558258408669	36.054	0.3187	36.054	35.892	36.211	0					19	8	3	0	0	0	0.0792	1	13541	13541		84.916	12.036	1	418100			29204	4012	19819	19891	29593	29593					-0.004148228277585986
PFQPHRPI	8	Unmodified	_PFQPHRPI_					0	0	0		HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|2|1|sense	HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|2|1|sense	HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|2|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2765808105469	2	496.277244	990.539935	0.72639	0.00036049	-1.2722	-0.00063139	-0.54585	-0.00027089	496.2765706439258	46.388	0.42799	46.388	46.171	46.599	0					43	26	2	0	0	0	0.59411	1	17113	17113		50.025	2.3672	1	87206			29205	11203	19820	19892	29594	29594					0.04428617091127762
PFQWGDTHY	9	Unmodified	_PFQWGDTHY_					0	0	0		ZNF418|p.R256Dfs*130|1|0.44|ENSG00000196724|chr19:57927415-57927415|T/-|frameshift_variant;ZNF418|p.Y398*|1|0.18|ENSG00000196724|chr19:57926987-57926988|AT/-|frameshift_variant;ENSG00000196724|ENST00000396147|ZNF418	ZNF418|p.R256Dfs*130|1|0.44|ENSG00000196724|chr19:57927415-57927415|T/-|frameshift_variant	ZNF418|p.R256Dfs*130|1|0.44|ENSG00000196724|chr19:57927415-57927415|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.7513427734375	2	575.751256	1149.48796	-0.27229	-0.00015677	0.28768	0.00016563	0.015384	8.8575E-06	575.7514950351816	11.313	0.076009	11.313	11.26	11.336	0					9	3	3	0	0	0	0.54267	1	2278	2278		27.882	6.9353	1	251260			29206	7394	19821	19893	29595	29595					-0.08080591113275659
PFQYQSKIA	9	Unmodified	_PFQYQSKIA_					0	0	0			REV__PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant	REV__PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2872314453125	2	541.287474	1080.5604	1.0394	0.00056263	-3.0846	-0.0016696	-2.0451	-0.001107	541.2860877897463	16.877	0.096199	16.877	16.834	16.93	0					7	4	2	0	0	0	0.40353	1	3932	3932		34.173	0	1	52366	+		29207	21360	19822	19894	29596	29596					0.023337429602861448
PFRGRASGPG	10	Unmodified	_PFRGRASGPG_					0	0	0			REV__KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;REV__KMT2B|p.P174Qfs*20|1|0.38|ENSG00000272333|chr19:35719862-35719862|C/-|frameshift_variant	REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2664489746094	2	501.267407	1000.52026	0.030968	1.5523E-05	-1.4974	-0.00075062	-1.4665	-0.0007351	501.7681700262746	31.795	0.15847	31.795	31.668	31.827	0					5	3	2	0	0	0	0.67098	1	12027	12027		25.574	2.0514	1	52168	+		29208	17811;20794;20793	19823	19895	29597	29597					0.02002241080379008
PFRMSRSL	8	Unmodified	_PFRMSRSL_					0	0	0			REV__ENST00000460307.1_1_2:70528513-70529143:-|nuORF	REV__ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.26611328125	2	497.268561	992.52257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.664	1	39.664	39.164	40.164	0								0	0	0	1.7419	1	15606	15606		44.117	1.6423	1		+		29209	19366	19824	19896	29598	29598					0.026009534938225443
PFRSPAPY	8	Unmodified	_PFRSPAPY_					0	0	0			REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7422180175781	2	467.742702	933.470852	-0.64965	-0.00030387	0.17484	8.1781E-05	-0.47481	-0.00022209	467.74275879861545	39.578	0.68052	39.578	39.477	40.158	0					58	26	4	0	0	0	0.65276	1	15185	15185		40.573	10.731	1	3554200	+		29210	12302	19825	19897	29599	29599					0.0014553307156575102
PFRTPSIN	8	Unmodified	_PFRTPSIN_					0	0	0			REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF	REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2713623046875	2	466.253434	930.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.162	1	36.162	35.662	36.662	0								0	0	0	1.7419	1	14063	14063		66.429	3.123	1		+		29211	20294	19826	19898	29600	29600					0.024289181002927762
PFSFSVLFY	9	Unmodified	_PFSFSVLFY_					0	0	0		ENST00000546676.1_1_12:50529254-50529473:-|nuORF	ENST00000546676.1_1_12:50529254-50529473:-|nuORF	ENST00000546676.1_1_12:50529254-50529473:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.7785034179688	2	553.781493	1105.54843	-1.1729	-0.00064952	-1.0111	-0.00055993	-2.184	-0.0012095	553.7811017494705	42.506	0.12084	42.506	42.45	42.57	0					11	7	2	0	0	0	0.50461	1	14840	14840		31.955	0.42505	1	42776			29212	10581	19827	19899	29601	29601					-0.00011873782887050766
PFSGVMVQ	8	Unmodified	_PFSGVMVQ_					0	0	0			REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant;REV__TET3|p.Q379Rfs*162|2|0.23|ENSG00000187605|chr2:74047047-74047047|C/-|frameshift_variant	REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.7156677246094	2	432.717839	863.421125	-0.48831	-0.0002113	-2.9526	-0.0012776	-3.4409	-0.0014889	432.71649037281463	17.15	0.41499	17.15	16.844	17.259	0					14	8	2	0	0	0	0.3961	1	4907	4907		71.296	10.324	1	280660	+		29213	17125;21632	19828	19900	29602	29602					-0.01604917928739269
PFSNSHNAL	9	Unmodified	_PFSNSHNAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7380676269531	2	493.738148	985.461744	-0.083572	-4.1263E-05	0.43118	0.00021289	0.34761	0.00017163	493.738535776953	24.925	0.17358	24.925	24.858	25.032	0					15	5	4	0	0	0	0.035062	1	7422	7422		104.06	10.861	1	329050			29214	5864	19829	19901	29603	29603					-0.031568602847755756
PFSPLSNL	8	Unmodified	_PFSPLSNL_					0	0	0		ENST00000515007.6_1_5:77784595-77784718:-|nuORF	ENST00000515007.6_1_5:77784595-77784718:-|nuORF	ENST00000515007.6_1_5:77784595-77784718:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.73516845703125	2	437.737086	873.459619	-3.0902	-0.0013527	-1.4987	-0.00065605	-4.5889	-0.0020088	437.73640933268183	18.788	0.21742	18.788	18.667	18.884	0					13	5	3	0	0	0	0.43813	1	4947	4947		66.429	13.078	1	183260			29215	10261	19830	19902	29604	29604					0.01782710977431634
PFSSRFPL	8	Unmodified	_PFSSRFPL_					0	0	0		ENST00000377387.5_1_11:64532125-64532308:-|nuORF	ENST00000377387.5_1_11:64532125-64532308:-|nuORF	ENST00000377387.5_1_11:64532125-64532308:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7595520019531	2	475.758352	949.502152	2.2981	0.0010934	0.092119	4.3827E-05	2.3903	0.0011372	475.7583792428597	35.265	3.5626	35.265	34.46	38.022	0					124	72	3	0	0	0	0.49887	1	13701	13701		60.294	10.269	1	928520			29216	9051	19831	19903	29605	29605					0.02538106105669158
PFSSTPCTFHK	11	Unmodified	_PFSSTPCTFHK_					0	0	0			REV__nc|ENSG00000095383|Q9BYX2-6|TBC1D2	REV__nc|ENSG00000095383|Q9BYX2-6|TBC1D2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.2950439453125	2	626.294973	1250.57539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.817	1	13.817	13.317	14.317	0								0	0	0	0.45674	1	2756	2756		23.523	6.0547	1		+		29217	13470	19832	19904	29606	29606					-0.03987133234022622
PFSVVGSNQL	10	Unmodified	_PFSVVGSNQL_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2794189453125	2	524.277106	1046.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.391	1	29.391	28.891	29.891	0								0	0	0	0.19992	1	10760	10760		64.207	0.901	1				29218	6085	19833	19905	29607	29607					0.018251525806363134
PFTPLSNVMS	10	Unmodified	_PFTPLSNVMS_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.772705078125	2	546.773342	1091.53213	0.33611	0.00018377	0.76991	0.00042097	1.106	0.00060474	546.7729087039698	13.3	0.2903	13.3	13.129	13.419	0					11	6	4	0	0	0	0.7005	1	3231	3231		21.96	0	1	382190	+		29219	12636	19834	19906	29608	29608					-0.009973230113246245
PFVVVSVVG	9	Unmodified	_PFVVVSVVG_					0	0	0		TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant;TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28	TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant	TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7705078125	2	451.770929	901.527304	2.5271	0.0011417	-2.8777	-0.0013001	-0.35056	-0.00015837	451.76979878951744	45.193	0.1137	45.193	45.149	45.263	0					7	5	2	0	0	0	0.49003	1	18106	18106		33.516	1.5607	1	30779			29220	1980	19835	19907	29609	29609					0.07260160908253965
PFWADLQP	8	Unmodified	_PFWADLQP_					0	0	0		ENSG00000105376|ENST00000221980|ICAM5;ENST00000586004.1_1_19:10400719-10402179:+|nuORF;ICAM5|p.G308Afs*10|1|0.48|ENSG00000105376|chr19:10292279-10292279|G/-|frameshift_variant;ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.24029541015625	2	487.242535	972.470518	-0.23176	-0.00011293	-4.2981	-0.0020942	-4.5298	-0.0022071	487.24026089079854	29.568	0.17184	29.568	29.415	29.587	0					7	4	2	0	0	0	0.61938	1	9964	9964		45.952	1.4209	1	45183			29221	2351	19836	19908	29610	29610					-0.016818866483049533
PFWAGFSVL	9	Unmodified	_PFWAGFSVL_					0	0	0		ENSG00000104059|ENST00000261275|ENTREP2	ENSG00000104059|ENST00000261275|ENTREP2	ENSG00000104059|ENST00000261275|ENTREP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2684936523438	2	512.268553	1022.52255	-1.7127	-0.00087739	0.30419	0.00015582	-1.4086	-0.00072156	512.2687612110018	41.36	0.21143	41.36	41.3	41.511	0					18	12	2	0	0	0	0.47428	1	14589	14589		35.201	0	1	60930			29222	2264	19837	19909	29611	29611					0.01219276765482391
PGAAALCF	8	Unmodified	_PGAAALCF_					0	0	0		ENST00000573236.5_1_16:4390322-4393442:-|nuORF	ENST00000573236.5_1_16:4390322-4393442:-|nuORF	ENST00000573236.5_1_16:4390322-4393442:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	375.1845703125	2	375.186174	748.357796	-2.1183	-0.00079474	-2.3152	-0.00086864	-4.4335	-0.0016634	375.18527083146284	32.105	0.15014	32.105	32.018	32.168	0					6	4	2	0	0	0	0.79462	1	11134	11134		16.705	0	1	59495			29223	10817	19838	19910	29612	29612					-0.026448586459878243
PGAAESPP	8	Unmodified	_PGAAESPP_					0	0	0			REV__ENST00000357430.7_1_2:223765437-223773458:+|nuORF	REV__ENST00000357430.7_1_2:223765437-223773458:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.1781921386719	2	363.176861	724.339169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.839	1	16.839	16.339	17.339	0								0	0	0	1.7419	1	4076	4076		21.702	0	1		+		29224	18532	19839	19911	29613	29613					-0.03402697016190359
PGAAGCHL	8	Unmodified	_PGAAGCHL_					0	0	0		ENST00000309502.7_1_1:203097442-203098130:+|nuORF	ENST00000309502.7_1_1:203097442-203098130:+|nuORF	ENST00000309502.7_1_1:203097442-203098130:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.1739807128906	2	363.173598	724.332644	0.4865	0.00017668	0.80701	0.00029308	1.2935	0.00046977	363.1738827304213	24.188	0.36759	24.188	24.079	24.447	0					14	7	3	0	0	0	0.77013	1	8468	8468		24.504	0	1	689440			29225	8539	19840	19912	29614	29614					-0.04054913448555908
PGAALVAS	8	Unmodified	_PGAALVAS_					0	0	0		ENST00000330883.8_1_7:150652652-150652847:-|nuORF	ENST00000330883.8_1_7:150652652-150652847:-|nuORF	ENST00000330883.8_1_7:150652652-150652847:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.1973571777344	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.049	1	17.049	16.549	17.549	0								0	0	0	1.7419	1	4995	4995		54.765	0	1				29226	8674	19841	19913	29615	29615					0.02582483743128705
PGAARPPPL	9	Unmodified	_PGAARPPPL_					0	0	0		ENST00000570251.1_3_15:66678940-66679024:-|nuORF	ENST00000570251.1_3_15:66678940-66679024:-|nuORF	ENST00000570251.1_3_15:66678940-66679024:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2576599121094	2	438.25852	874.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.969	1	34.969	34.469	35.469	0								0	0	0	0.34228	1	12420	12420		26.796	0	1				29227	10794	19842	19914	29616	29616					0.060215258255084336
PGAGARPR	8	Unmodified	_PGAGARPR_					0	0	0		ENST00000489207.1_1_14:74766721-74769615:-|nuORF;ENST00000557554.5_1_14:74757154-74769615:-|nuORF;ENST00000493752.5_1_14:74766202-74769615:-|nuORF;ENST00000477803.5_1_14:74764631-74769615:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.22503662109375	2	391.225011	780.435469	0.87839	0.00034365	-0.41427	-0.00016207	0.46412	0.00018157	391.22479503018076	43.697	1.5441	43.697	43.319	44.863	0					126	89	3	0	0	0	0.7914	1	16364	16364		14.664	0	1	305500			29228	3130	19843	19915	29617	29617					0.03646915334422829
PGAGARPR	8	Unmodified	_PGAGARPR_					0	0	0		ENST00000489207.1_1_14:74766721-74769615:-|nuORF;ENST00000557554.5_1_14:74757154-74769615:-|nuORF;ENST00000493752.5_1_14:74766202-74769615:-|nuORF;ENST00000477803.5_1_14:74764631-74769615:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2247314453125	2	391.225011	780.435469	-0.12552	-4.9105E-05	0.28296	0.0001107	0.15745	6.1598E-05	391.2250495168464	44.302	1.5378	44.302	43.399	44.937	0					131	89	2	0	0	0	0.8006	1	16418	16418		20.482	0	1	196140			29229	3130	19843	19915	29618	29618					0.03646915334422829
PGAGRALL	8	Unmodified	_PGAGRALL_					0	0	0			REV__KLHL34|p.R288Afs*7|3|0.44|ENSG00000185915|chrX:21656928-21656928|C/-|frameshift_variant	REV__KLHL34|p.R288Afs*7|3|0.44|ENSG00000185915|chrX:21656928-21656928|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.7320251464844	2	377.732138	753.449723	0.61756	0.00023327	-0.91554	-0.00034583	-0.29798	-0.00011256	377.731801679149	18.352	0.5226	18.352	17.988	18.51	0					19	10	3	0	0	0	0.66238	1	5632	5632		39.021	0	1	1118700	+		29230	17052	19844	19916	29619	29619					0.06313567762697403
PGAGRAPR	8	Unmodified	_PGAGRAPR_					0	0	0			REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2248229980469	2	391.225011	780.435469	0.34168	0.00013367	-0.16073	-6.288E-05	0.18095	7.0793E-05	391.2248343886734	43.882	2.0593	43.882	43.246	45.306	0					281	113	3	0	0	0	0.8006	1	17253	17253		20.482	0	1	459120	+		29231	20950	19845	19917	29620	29620					0.0364691533441146
PGAGRTTSL	9	Unmodified	_PGAGRTTSL_					0	0	0		ENST00000581471.2_1_18:5238177-5238297:+|nuORF	ENST00000581471.2_1_18:5238177-5238297:+|nuORF	ENST00000581471.2_1_18:5238177-5238297:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2369384765625	2	430.235242	858.45593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.967	1	28.967	28.467	29.467	0								0	0	0	0.3304	1	10296	10296		29.15	0.89528	1				29232	10873	19846	19918	29621	29621					0.02104041203563156
PGALVMIP	8	Unmodified	_PGALVMIP_					0	0	0			REV__ENSG00000082684|ENST00000357599|SEMA5B	REV__ENSG00000082684|ENST00000357599|SEMA5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.2350158691406	2	399.233125	796.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.168	1	14.168	13.668	14.668	0								0	0	0	1.7419	1	3463	3463		16.705	0	1		+		29233	13321	19847	19919	29622	29622					0.04532860456299659
PGARSHRRK	9	Unmodified	_PGARSHRRK_					0	0	0		ENST00000564948.1_1_16:57406535-57416157:+|nuORF;ENST00000565912.1_1_16:57413477-57416157:+|nuORF;ENST00000006053.6_2_16:57406464-57416157:+|nuORF;ENST00000563383.1_2_16:57406464-57416157:+|nuORF	ENST00000564948.1_1_16:57406535-57416157:+|nuORF	ENST00000564948.1_1_16:57406535-57416157:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.54510498046875	3	355.544324	1063.61114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.159	1	17.159	16.659	17.659	0								0	0	0	0.36609	1	4898	4898		21.686	0.73882	1				29234	8137	19848	19920	29623	29623					0.08188129848508652
PGASDHRPRH	10	Unmodified	_PGASDHRPRH_					0	0	0		ENST00000503552.1_1_1:17316691-17319005:-|nuORF;ENST00000326735.12_1_1:17316691-17319005:-|nuORF	ENST00000503552.1_1_1:17316691-17319005:-|nuORF	ENST00000503552.1_1_1:17316691-17319005:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.2830200195312	2	565.28412	1128.55369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.268	1	42.268	41.768	42.768	0								0	0	0	0.4201	1	16596	16596		20.947	0.95016	1				29235	8650	19849	19921	29624	29624					-0.005447571477361635
PGASSLVQSGR	11	Unmodified	_PGASSLVQSGR_					0	0	0			REV__ENST00000562760.1_1_8:95651187-95651544:-|nuORF	REV__ENST00000562760.1_1_8:95651187-95651544:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2173461914062	2	529.783087	1057.55162	0.11498	6.0915E-05	-0.27691	-0.0001467	-0.16193	-8.5789E-05	530.2845343382239	11.861	0.32739	11.861	11.786	12.113	0					22	11	3	0	0	0	0.7887	1	2417	2417		17.468	1.8262	1	466080	+		29236	20309	19850	19922	29625	29625					0.025147693238068314
PGASSSPPR	9	Unmodified	_PGASSSPPR_					0	0	0			REV__ENST00000502100.2_1_5:25190936-25302336:+|nuORF	REV__ENST00000502100.2_1_5:25190936-25302336:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.21942138671875	2	428.219591	854.42463	-0.41817	-0.00017907	0.038472	1.6475E-05	-0.3797	-0.00016259	428.21957719466747	16.359	0.66609	16.359	15.849	16.515	0					25	13	3	0	0	0	0.19605	1	4476	4476		62.107	0	1	712020	+		29237	19809	19851	19923	29626	29626					-0.008405318305221954
PGATTPLPK	9	Unmodified	_PGATTPLPK_					0	0	0		ENST00000277746.10_1_10:64893073-64911919:+|nuORF;nc|ENSG00000148572|Q96F24-3|NRBF2	ENST00000277746.10_1_10:64893073-64911919:+|nuORF	ENST00000277746.10_1_10:64893073-64911919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.2579040527344	2	441.258185	880.501818	-0.54949	-0.00024247	-0.31392	-0.00013852	-0.86341	-0.00038099	441.25788467179336	23.578	0.17043	23.578	23.514	23.685	0					6	4	2	0	0	0	0.37197	1	7226	7226		44.117	1.7207	1	45955			29238	8400	19852	19924	29627	29627					0.05678686385806486
PGCQKGRKP	9	Unmodified	_PGCQKGRKP_					0	0	0		ENST00000550184.5_1_12:56553125-56553233:+|nuORF	ENST00000550184.5_1_12:56553125-56553233:+|nuORF	ENST00000550184.5_1_12:56553125-56553233:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2340393066406	2	485.766186	969.517819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.738	1	18.738	18.238	19.238	0								0	0	0	0.23459	1	5665	5665		45.952	3.5558	1				29239	10615	19853	19925	29628	29628					0.03184069351073049
PGDRPLYLH	9	Unmodified	_PGDRPLYLH_					0	0	0		nc|ENSG00000132680|Q7Z7F0-4|KHDC4;ENST00000466713.1_1_1:155896424-155904164:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENSG00000132680|ENST00000368321|KHDC4	nc|ENSG00000132680|Q7Z7F0-4|KHDC4	nc|ENSG00000132680|Q7Z7F0-4|KHDC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2840576171875	2	534.285266	1066.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.028	1	20.028	19.528	20.528	0								0	0	0	0.36919	1	5556	5556		25.574	5.5773	1				29240	3807	19854	19926	29629	29629					0.025362785373545194
PGEGTWEPEHT	11	Unmodified	_PGEGTWEPEHT_					0	0	0		ENST00000505372.1_1_5:102295723-102310166:+|nuORF;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;PAM|p.K891Nfs*31|1|0.38|ENSG00000145730|chr5:103025313-103025313|A/-|frameshift_variant;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	ENST00000505372.1_1_5:102295723-102310166:+|nuORF	ENST00000505372.1_1_5:102295723-102310166:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	620.2680053710938	2	620.267467	1238.52038	0.065406	4.0569E-05	0.24368	0.00015114	0.30908	0.00019171	620.2678583811921	41.26	0.15103	41.26	41.219	41.37	0					12	7	2	0	0	0	0.74306	1	15685	15685		23.523	2.5758	1	58936			29241	4686	19855	19927	29630	29630					-0.08933848500964814
PGFIAAVGLSL	11	Unmodified	_PGFIAAVGLSL_					0	0	0			REV__GRIK2|p.F694Sfs*16|1|0.22|ENSG00000164418|chr6:101928623-101928623|T/-|frameshift_variant	REV__GRIK2|p.F694Sfs*16|1|0.22|ENSG00000164418|chr6:101928623-101928623|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.8730773925781	3	348.874454	1043.60153	-0.072211	-2.5193E-05	-3.9478	-0.0013773	-4.02	-0.0014025	348.87325661524153	24.575	0.10264	24.575	24.506	24.609	0					4	2	2	0	0	0	0.59682	1	7689	7689		38.754	5.238	1	62564	+		29242	20705	19856	19928	29631	29631					0.08147503999771288
PGFPGGVS	8	Unmodified	_PGFPGGVS_					0	0	0		ENSG00000180667|ENST00000315927|YOD1	ENSG00000180667|ENST00000315927|YOD1	ENSG00000180667|ENST00000315927|YOD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.1827087402344	2	359.181946	716.34934	1.2737	0.00045749	0.91424	0.00032838	2.1879	0.00078587	359.1822213511443	47.156	0.21548	47.156	47.062	47.278	0					12	9	2	0	0	0	0.79882	1	18835	18835		19.36	2.655	1	100340			29243	6813	19857	19929	29632	29632					-0.020180892909479553
PGGAALLR	8	Unmodified	_PGGAALLR_					0	0	0			REV__ENST00000304222.2_1_17:15848323-15848530:+|nuORF	REV__ENST00000304222.2_1_17:15848323-15848530:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.7322082519531	2	377.732138	753.449723	-1.0971	-0.0004144	0.87731	0.00033139	-0.21975	-8.3007E-05	377.7324226104551	18.069	0.34007	18.069	17.869	18.209	0					15	10	2	0	0	0	0.72892	1	4632	4632		29.842	6.8048	1	214410	+		29244	18229	19858	19930	29633	29633					0.06313567762708772
PGGAGVGP	8	Unmodified	_PGGAGVGP_					0	0	0		ENSG00000166987|ENST00000355673|MBD6;MBD6|p.R878Pfs*26|1|0.34|ENSG00000166987|chr12:57528369-57528406|GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT/-|frameshift_variant;MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant;MBD6|p.G877Afs*69|1|0.53|ENSG00000166987|chr12:57528367-57528367|G/-|frameshift_variant;MBD6|p.F318Sfs*59|1|0.21|ENSG00000166987|chr12:57525914-57525914|C/-|frameshift_variant;MBD6|p.P478Hfs*9|1|0.21|ENSG00000166987|chr12:57526575-57526575|C/-|frameshift_variant;MBD6|p.P443Qfs*44|1|0.22|ENSG00000166987|chr12:57526292-57526292|C/-|frameshift_variant;MBD6|p.P671Lfs*4|2|0.31|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant;MBD6|p.P666Hfs*9|1|0.26|ENSG00000166987|chr12:57527137-57527137|C/-|frameshift_variant;MBD6|p.Q694Sfs*5|7|0.43|ENSG00000166987|chr12:57527219-57527219|C/-|frameshift_variant;MBD6|p.T672Yfs*45|1|0.54|ENSG00000166987|chr12:57527150-57527151|-/C|frameshift_variant;MBD6|p.Q734Nfs*18|4|0.41|ENSG00000166987|chr12:57527618-57527618|C/-|frameshift_variant;ENST00000493067.5_1_9:135979082-135979694:-|nuORF;MBD6|p.S211Lfs*57|1|0.19|ENSG00000166987|chr12:57525594-57525594|C/-|frameshift_variant	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	306.160888671875	2	306.161014	610.307475	-0.024319	-7.4454E-06	0.0048096	1.4725E-06	-0.019509	-5.9729E-06	306.16098856169947	23.347	0.1496	23.347	23.251	23.401	0					6	3	2	0	0	0	0.77013	1	7103	7103		24.504	0	1	92423			29245	5959	19859	19931	29634	29634					-0.013266449794741675
PGGALNNL	8	Unmodified	_PGGALNNL_					0	0	0		nc|ENSG00000101190|Q9UL49-1|TCFL5;ENSG00000101190|ENST00000335351|TCFL5	nc|ENSG00000101190|Q9UL49-1|TCFL5	nc|ENSG00000101190|Q9UL49-1|TCFL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	378.2048645019531	2	378.205953	754.397353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.974	1	20.974	20.474	21.474	0								0	0	0	1.7419	1	5946	5946		37.028	7.1869	1				29246	2100	19860	19932	29635	29635					0.01032984629080147
PGGFPRKQ	8	Unmodified	_PGGFPRKQ_					0	0	0			REV__nc|ENSG00000129673|Q16613-2|AANAT	REV__nc|ENSG00000129673|Q16613-2|AANAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.74798583984375	2	443.748319	885.482085	0.52939	0.00023492	-1.311	-0.00058177	-0.78164	-0.00034685	443.74789147494516	20.322	0.71908	20.322	20.062	20.781	0					28	14	3	0	0	0	0.64096	1	6630	6630		42.474	0	1	649180	+		29247	21015	19861	19933	29636	29636					0.034763551657079006
PGGFSGPGGF	10	Unmodified	_PGGFSGPGGF_					0	0	0			REV__KRT76|p.G150Afs*9|1|0.43|ENSG00000185069|chr12:52776843-52776843|C/-|frameshift_variant	REV__KRT76|p.G150Afs*9|1|0.43|ENSG00000185069|chr12:52776843-52776843|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.2038879394531	2	440.20341	878.392267	-1.0427	-0.00045899	0.95486	0.00042033	-0.087824	-3.866E-05	440.203809488322	39.608	0.59295	39.608	39.362	39.955	0					70	33	3	0	0	0	0.47621	1	13255	13255		47.916	1.9636	1	807540	+	+	29248	12600	19862	19934	29637	29637					-0.051793192335026106
PGGRASPPVG	10	Unmodified	_PGGRASPPVG_					0	0	0			REV__ENSG00000142347|ENST00000644032|MYO1F	REV__ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.74285888671875	2	447.743234	893.471915	-0.11468	-5.1346E-05	-0.35627	-0.00015952	-0.47095	-0.00021086	447.74303652918735	18.942	0.28919	18.942	18.761	19.05	0					11	6	2	0	0	0	0.58896	1	5894	5894		35.618	2.1027	1	192190	+		29249	15148	19863	19935	29638	29638					0.020917474404768654
PGGWGGLTSL	10	Unmodified	_PGGWGGLTSL_					0	0	0			REV__ENST00000598273.5_1_19:48283225-48283447:+|nuORF	REV__ENST00000598273.5_1_19:48283225-48283447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7459411621094	2	472.745442	943.476331	-0.33823	-0.0001599	-0.0001073	-5.0727E-08	-0.33834	-0.00015995	472.74538493274645	33.516	0.31608	33.516	33.366	33.682	0					21	11	3	0	0	0	0.58896	1	10864	10864		35.618	5.1146	1	189590	+		29250	20580	19864	19936	29639	29639					0.002332118633717073
PGGWGGLTSL	10	Unmodified	_PGGWGGLTSL_					0	0	0			REV__ENST00000598273.5_1_19:48283225-48283447:+|nuORF	REV__ENST00000598273.5_1_19:48283225-48283447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7451477050781	2	472.745442	943.476331	-1.4877	-0.00070329	0.88545	0.00041859	-0.60223	-0.0002847	472.7458729993894	33.541	0.26838	33.541	33.461	33.73	0					16	10	2	0	0	0	0.42631	1	11269	11269		53.351	5.4358	1	162060	+		29251	20580	19864	19936	29640	29640					0.002332118633717073
PGIALSTGH	9	Unmodified	_PGIALSTGH_					0	0	0		ENST00000567728.1_1_16:50770494-50770695:-|nuORF	ENST00000567728.1_1_16:50770494-50770695:-|nuORF	ENST00000567728.1_1_16:50770494-50770695:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.73150634765625	2	426.732335	851.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.547	1	27.547	27.047	28.047	0								0	0	0	0.34907	1	9872	9872		25.45	2.4077	1				29252	10772	19865	19937	29641	29641					0.01844942691900542
PGIDGVRLR	9	Unmodified	_PGIDGVRLR_					0	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.19781494140625	3	328.197931	981.571963	0.63852	0.00020956	-1.1543	-0.00037885	-0.5158	-0.00016929	328.19764319259053	24.313	0.2016	24.313	24.22	24.421	0					11	4	4	0	0	0	0.55379	1	8183	8183		26.693	1.1189	1	491190	+		29253	21020	19866	19938	29642	29642					0.08043984774258206
PGKHRTVG	8	Unmodified	_PGKHRTVG_					0	0	0		ENST00000486327.6_1_19:47884337-47884637:+|nuORF	ENST00000486327.6_1_19:47884337-47884637:+|nuORF	ENST00000486327.6_1_19:47884337-47884637:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.2456359863281	2	426.245944	850.477334	-0.73235	-0.00031216	0.50321	0.00021449	-0.22913	-9.7667E-05	426.24606389702456	48.651	0.32821	48.651	48.562	48.891	0					37	20	2	0	0	0	0.79882	1	14762	14762		19.36	1.0356	1	236160			29254	10020	19867	19939	29643	29643					0.046114710229517186
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2742004394531	2	450.274701	898.534849	0.057709	2.5985E-05	-0.30871	-0.00013901	-0.25101	-0.00011302	450.274463911326	52.689	0.39542	52.689	52.585	52.981	0					65	24	4	0	0	0	0.68432	1	15609	15609		35.618	12.576	1	912320	+		29255	19267	19868	19940	29644	29644					0.08152313228504227
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.27447509765625	2	450.274701	898.534849	-0.78702	-0.00035437	0.45351	0.00020421	-0.3335	-0.00015017	450.27483258536483	52.674	0.42789	52.674	52.566	52.994	0					58	27	3	0	0	0	0.78978	1	16147	16147		21.96	3.6355	1	1062300	+		29256	19267	19868	19940	29645	29645					0.08152313228504227
PGLAARGA	8	Unmodified	_PGLAARGA_					0	0	0		ENST00000375749.7_1_20:30822509-30822659:+|nuORF	ENST00000375749.7_1_20:30822509-30822659:+|nuORF	ENST00000375749.7_1_20:30822509-30822659:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.70855712890625	2	356.708663	711.402772	0.71768	0.000256	-1.3362	-0.00047662	-0.61849	-0.00022062	356.7080981647984	17.858	0.09399	17.858	17.816	17.91	0					4	2	2	0	0	0	0.64096	1	5129	5129		42.474	7.2737	1	174110			29257	9035	19869	19941	29646	29646					0.03552708211555
PGLAARGA	8	Unmodified	_PGLAARGA_					0	0	0		ENST00000375749.7_1_20:30822509-30822659:+|nuORF	ENST00000375749.7_1_20:30822509-30822659:+|nuORF	ENST00000375749.7_1_20:30822509-30822659:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	356.7084655761719	2	356.708663	711.402772	-0.087576	-3.1239E-05	0.11723	4.1816E-05	0.029651	1.0577E-05	356.7087861694418	17.647	0.086967	17.647	17.568	17.655	0					4	2	2	0	0	0	0.57802	1	4432	4432		52.299	0	1	90631			29258	9035	19869	19941	29647	29647					0.03552708211555
PGLAGAAR	8	Unmodified	_PGLAGAAR_					0	0	0			REV__ENST00000270570.8_1_17:19437323-19449797:+|nuORF	REV__ENST00000270570.8_1_17:19437323-19449797:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	356.7086181640625	2	356.708663	711.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.547	1	17.547	17.047	18.047	0								0	0	0	1.7419	1	4204	4204		42.474	5.446	1		+		29259	18098	19870	19942	29648	29648					0.03552708211555
PGLAGKNG	8	Unmodified	_PGLAGKNG_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.2007751464844	2	357.20067	712.386788	0.44021	0.00015724	-0.43784	-0.0001564	0.0023705	8.4673E-07	357.200521828285	18.792	0.11648	18.792	18.722	18.839	0					5	3	2	0	0	0	0.68754	1	4747	4747		35.201	3.2459	1	107890			29260	4485	19871	19943	29649	29649					0.01909001974649982
PGLAGKNG	8	Unmodified	_PGLAGKNG_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.2003173828125	2	357.20067	712.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.855	1	18.855	18.355	19.355	0								0	0	0	1.7419	1	5002	5002		28.254	2.8041	1				29261	4485	19871	19943	29650	29650					0.01909001974649982
PGLAGKNG	8	Unmodified	_PGLAGKNG_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.20062255859375	2	357.20067	712.386788	0.3055	0.00010913	-0.11376	-4.0635E-05	0.19174	6.8491E-05	357.2005942740536	19.042	0.11452	19.042	18.984	19.099	0					4	2	2	0	0	0	0.68754	1	5966	5966		35.201	3.2459	1	234150			29262	4485	19871	19943	29651	29651					0.01909001974649982
PGLAGKNG	8	Unmodified	_PGLAGKNG_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.20062255859375	2	357.20067	712.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.929	1	18.929	18.429	19.429	0								0	0	0	1.7419	1	5039	5039		35.201	3.2459	1				29263	4485	19871	19943	29652	29652					0.01909001974649982
PGLAGKNG	8	Unmodified	_PGLAGKNG_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2;COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.2004699707031	2	357.20067	712.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.913	1	18.913	18.413	19.413	0								0	0	0	1.7419	1	5031	5031		20.482	1.1219	1				29264	4485	19871	19943	29653	29653					0.01909001974649982
PGLALAEPSR	10	Unmodified	_PGLALAEPSR_					0	0	0		ENST00000563630.5_2_16:2051172-2051695:-|nuORF	ENST00000563630.5_2_16:2051172-2051695:-|nuORF	ENST00000563630.5_2_16:2051172-2051695:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.785400390625	2	505.785099	1009.55564	1.0711	0.00054172	-1.0031	-0.00050736	0.067928	3.4357E-05	505.7846778292968	31.221	0.3601	31.221	31.077	31.438	0					17	8	3	0	0	0	0.41335	1	11746	11746		54.776	13.998	1	725660			29265	10734	19872	19944	29654	29654					0.05124858817521272
PGLAQTKYAE	10	Unmodified	_PGLAQTKYAE_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.2821655273438	2	539.282389	1076.55022	1.5474	0.00083447	-1.6213	-0.00087436	-0.073965	-3.9888E-05	539.2813658598709	17.259	0.07416	17.259	17.203	17.277	0					4	2	2	0	0	0	0.34667	1	4084	4084		62.107	9.1707	1	54133	+		29266	17260	19873	19945	29655	29655					0.015011352350256857
PGLEGLLL	8	Unmodified	_PGLEGLLL_					0	0	0			REV__ENST00000484848.5_1_10:102255105-102258991:-|nuORF	REV__ENST00000484848.5_1_10:102255105-102258991:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.2489318847656	2	406.249829	810.485105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.481	1	52.481	51.981	52.981	0								0	0	0	1.7419	1	15580	15580		28.254	5.2176	1		+		29267	13241	19874	19946	29656	29656					0.07228185499855044
PGLGGGKG	8	Unmodified	_PGLGGGKG_					0	0	0		ENST00000359827.7_1_7:132261243-132261777:-|nuORF	ENST00000359827.7_1_7:132261243-132261777:-|nuORF	ENST00000359827.7_1_7:132261243-132261777:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	321.6820068359375	2	321.682114	641.349674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.566	1	17.566	17.066	18.066	0								0	0	0	1.7419	1	4426	4426		20.482	5.8177	1				29268	8853	19875	19947	29657	29657					0.014653304288913205
PGLQLSDL	8	Unmodified	_PGLQLSDL_					0	0	0		MAGEC3|p.E168Rfs*45|1|0.33|ENSG00000165509|chrX:141879413-141879413|G/-|frameshift_variant;ENSG00000165509|ENST00000298296|MAGEC3	REV__ENST00000524437.5_1_11:62402291-62406896:-|nuORF	REV__ENST00000524437.5_1_11:62402291-62406896:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.734619140625	2	421.734543	841.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.559	1	39.559	39.059	40.059	0								0	0	0	1.7419	1	15643	15643		27.882	3.3631	1				29269	13412	19876	19948	29658	29658					0.027464071148074254
PGLRAAAG	8	Unmodified	_PGLRAAAG_					0	0	0		ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	356.70904541015625	2	356.708663	711.402772	-0.88744	-0.00031656	1.3295	0.00047423	0.44202	0.00015767	356.7090275945926	17.582	0.076706	17.582	17.528	17.604	0					4	2	2	0	0	0	0.75243	1	4438	4438		26.796	6.3143	1	33849			29270	8677	19877	19949	29659	29659					0.03552708211555
PGLRAAAG	8	Unmodified	_PGLRAAAG_					0	0	0		ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	356.70855712890625	2	356.708663	711.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.64	1	17.64	17.14	18.14	0								0	0	0	1.7419	1	4439	4439		44.531	0	1				29271	8677	19877	19949	29660	29660					0.03552708211555
PGLRGGVR	8	Unmodified	_PGLRGGVR_					0	0	0			REV__nc|ENSG00000254536|Q6QHF9-4|PAOX	REV__nc|ENSG00000254536|Q6QHF9-4|PAOX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.2480163574219	2	406.248486	810.48242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.735	1	52.735	52.235	53.235	0								0	0	0	1.7419	1	18666	18666		20.482	1.1219	1		+		29272	21232	19878	19950	29661	29661					0.06959774885558545
PGLTGSKGV	9	Unmodified	_PGLTGSKGV_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.23468017578125	2	408.23471	814.454868	0.98817	0.0004034	-0.93149	-0.00038027	0.056679	2.3138E-05	408.2342389981275	19.174	0.19416	19.174	19.083	19.277	0					10	4	3	0	0	0	0.39215	1	5750	5750		42.396	1.8235	1	711460			29273	609	19879	19951	29662	29662					0.040218268346734476
PGMERRGSLC	10	Unmodified	_PGMERRGSLC_					0	0	0		ENST00000486389.5_1_19:36504471-36504513:-|nuORF	ENST00000486389.5_1_19:36504471-36504513:-|nuORF	ENST00000486389.5_1_19:36504471-36504513:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.2670288085938	2	553.265693	1104.51683	1.7768	0.00098307	1.293	0.00071536	3.0698	0.0016984	553.2665921010529	20.344	0.22933	20.344	20.279	20.508	0					8	5	2	0	0	0	0.58189	1	5746	5746		36.447	8.5645	1	54110			29274	10022	19880	19952	29663	29663					-0.031245130801380583
PGNARRPAG	9	Unmodified	_PGNARRPAG_					0	0	0			REV__nc|ENSG00000162302|O75676-2|RPS6KA4	REV__nc|ENSG00000162302|O75676-2|RPS6KA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2469787597656	2	448.246475	894.478397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.166	1	22.166	21.666	22.666	0								0	0	0	0.25856	1	6483	6483		42.474	1.9018	1		+		29275	15806	19881	19953	29664	29664					0.02693685391852796
PGPGWGLESLQ	11	Unmodified	_PGPGWGLESLQ_					0	0	0		ENST00000375135.3_1_X:54521995-54522106:-|nuORF	ENST00000375135.3_1_X:54521995-54522106:-|nuORF	ENST00000375135.3_1_X:54521995-54522106:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.7894897460938	2	570.787838	1139.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.656	1	33.656	33.156	34.156	0								0	0	0	0.43542	1	11836	11836		29.17	0	1				29276	9025	19882	19954	29665	29665					-0.0030746239067411807
PGPIWLSF	8	Unmodified	_PGPIWLSF_					0	0	0		ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.74810791015625	2	458.749996	915.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.902	1	31.902	31.402	32.402	0								0	0	0	1.7419	1	10608	10608		44.531	3.7529	1				29277	8468	19883	19955	29666	29666					0.02431605219726407
PGPKPLVRTS	10	Unmodified	_PGPKPLVRTS_					0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	351.21337890625	3	351.213469	1050.61858	0.4164	0.00014624	-0.57929	-0.00020345	-0.16289	-5.7209E-05	351.21336653635575	22.853	0.17123	22.853	22.719	22.89	0					10	5	3	0	0	0	0.66699	1	6520	6520		26.063	0.9374	1	131140			29278	5439	19884	19956	29667	29667					0.09529424605557324
PGPPRGAW	8	Unmodified	_PGPPRGAW_					0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.22216796875	2	419.221937	836.429321	-0.045307	-1.8994E-05	0.3185	0.00013352	0.27319	0.00011453	419.2220157883418	14.02	0.10683	14.02	13.953	14.06	0					5	3	2	0	0	0	0.79176	1	2901	2901		21.702	21.702	1	65477	+		29279	16401	19885	19957	29668	29668					0.004563971029028835
PGPQALLSPK	10	Unmodified	_PGPQALLSPK_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5340881347656	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.632	1	48.632	48.132	49.132	0								0	0	0	0.4201	1	19310	19310		14.086	0	1		+		29280	15344	19886	19958	29669	29669					0.07810333339944009
PGPRSANQ	8	Unmodified	_PGPRSANQ_					0	0	0		ENST00000468705.1_1_7:99073929-99077448:+|nuORF	ENST00000468705.1_1_7:99073929-99077448:+|nuORF	ENST00000468705.1_1_7:99073929-99077448:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.7130126953125	2	413.711934	825.409314	0.061466	2.5429E-05	-0.081494	-3.3715E-05	-0.020028	-8.2857E-06	413.7119461930928	13.259	0.20547	13.259	13.159	13.364	0					6	4	2	0	0	0	0.78216	1	3225	3225		8.8223	0.59103	1	138710			29281	9817	19887	19959	29670	29670					-0.01037398627715902
PGQAGLMQTE	10	Unmodified	_PGQAGLMQTE_					0	0	0		ENST00000557175.5_1_14:58600041-58605929:-|nuORF;nc|ENSG00000139971|Q86TY3-2|ARMH4;ENST00000334342.5_1_14:58583046-58606076:-|nuORF;ENSG00000139971|ENST00000267485|ARMH4	ENST00000557175.5_1_14:58600041-58605929:-|nuORF	ENST00000557175.5_1_14:58600041-58605929:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2449340820312	2	516.244949	1030.47534	0.18894	9.7538E-05	0.72388	0.0003737	0.91282	0.00047124	516.245244280399	38.236	1.1488	38.236	37.708	38.856	0					48	24	3	0	0	0	0.55603	1	15253	15253		39.253	0.44669	1	118330			29282	4362	19888	19960	29671	29671					-0.038673705678547776
PGQGKGPG	8	Unmodified	_PGQGKGPG_					0	0	0			REV__ENST00000514014.1_1_4:40546450-40632592:-|nuORF	REV__ENST00000514014.1_1_4:40546450-40632592:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.1850280761719	2	349.18502	696.355488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.238	1	45.238	44.738	45.738	0								0	0	0	1.7419	1	14074	14074		23.037	0	1		+		29283	19898	19889	19961	29672	29672					-0.004835710594193188
PGQVARKN	8	Unmodified	_PGQVARKN_					0	0	0			REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2515869140625	2	435.251226	868.487899	0.83091	0.00036166	-0.63891	-0.00027809	0.192	8.3567E-05	435.2508543198939	44.938	1.1598	44.938	44.628	45.787	0					101	66	2	0	0	0	0.75243	1	17585	17585		26.796	4.8362	1	228920	+		29284	13637	19890	19962	29673	29673					0.048394536773685104
PGQVARKN	8	Unmodified	_PGQVARKN_					0	0	0			REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2515563964844	2	435.251226	868.487899	0.82777	0.00036029	-0.29988	-0.00013052	0.52789	0.00022976	435.25097981463324	46.185	1.3887	46.185	45.832	47.221	0					148	79	3	0	0	0	0.76283	1	17893	17893		25.45	3.7478	1	328570	+		29285	13637	19890	19962	29674	29674					0.048394536773685104
PGRAAVPPW	9	Unmodified	_PGRAAVPPW_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11;ENST00000567385.5_1_16:48244807-48265838:-|nuORF	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	317.5119323730469	3	317.511738	949.513385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.658	1	18.658	18.158	19.158	0								0	0	0	0.37146	1	4912	4912		19.997	2.6318	1				29286	3217	19891	19963	29675	29675					0.03660928199792579
PGRAGVPGLR	10	Unmodified	_PGRAGVPGLR_					0	0	0		COL16A1|p.K598R|1|0.4|ENSG00000084636|chr1:31688477-31688477|T/C|missense_variant	COL16A1|p.K598R|1|0.4|ENSG00000084636|chr1:31688477-31688477|T/C|missense_variant	COL16A1|p.K598R|1|0.4|ENSG00000084636|chr1:31688477-31688477|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.79559326171875	2	490.293425	978.572297	-0.069387	-3.402E-05	2.806	0.0013758	2.7366	0.0013417	490.2947610474921	35.031	0.26875	35.031	34.933	35.202	0					11	7	2	0	0	0	0.54197	1	13546	13546		40.778	0.20554	1	79350			29287	597	19892	19964	29676	29676					0.08215404494137601
PGRGQETL	8	Unmodified	_PGRGQETL_					0	0	0		ENST00000531473.5_1_8:144695082-144696778:-|nuORF	ENST00000531473.5_1_8:144695082-144696778:-|nuORF	ENST00000531473.5_1_8:144695082-144696778:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.22930908203125	2	429.227417	856.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.605	1	40.605	40.105	41.105	0								0	0	0	1.7419	1	16135	16135		53.351	5.4358	1				29288	10437	19893	19965	29677	29677					0.0063175468651479605
PGRHFTAQ	8	Unmodified	_PGRHFTAQ_					0	0	0		ENST00000372022.5_1_9:136197973-136198507:-|nuORF	ENST00000372022.5_1_9:136197973-136198507:-|nuORF	ENST00000372022.5_1_9:136197973-136198507:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2347717285156	2	457.235576	912.456599	-2.6412	-0.0012076	0.57664	0.00026366	-2.0645	-0.00094398	457.2357965002292	22.948	0.17813	22.948	22.855	23.033	0					10	4	3	0	0	0	0.67394	1	6910	6910		37.159	37.159	1	222710			29289	8973	19894	19966	29678	29678					-0.0031311935672420077
PGRSKRRL	8	Unmodified	_PGRSKRRL_					0	0	0			REV__ENST00000590714.1_1_19:56110838-56111102:-|nuORF	REV__ENST00000590714.1_1_19:56110838-56111102:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	323.8745422363281	3	323.87367	968.599181	1.5181	0.00049167	1.0316	0.00033411	2.5497	0.00082577	323.8740681178333	13.195	0.19865	13.195	13.098	13.297	0					14	4	4	0	0	0	0.75243	1	3164	3164		21.96	4.4919	1	12617000	+		29290	20523	19895	19967	29679	29679					0.11362513105314065
PGRSLTPC	8	Unmodified	_PGRSLTPC_					0	0	0		ENST00000394986.5_1_4:90757962-90758253:-|nuORF;ENST00000394991.7_1_4:90756762-90758367:-|nuORF	ENST00000394986.5_1_4:90757962-90758253:-|nuORF	ENST00000394986.5_1_4:90757962-90758253:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.7130126953125	2	415.713088	829.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.548	1	20.548	20.048	21.048	0								0	0	0	1.7419	1	6676	6676		68.485	0	1				29291	9186	19896	19968	29680	29680					-0.009906862142770478
PGRVVKAG	8	Unmodified	_PGRVVKAG_					0	0	0			REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2451171875	2	392.245412	782.476272	0.38921	0.00015267	-1.1904	-0.00046694	-0.80123	-0.00031428	392.2449954479176	11.654	0.1995	11.654	11.506	11.706	0					7	5	2	0	0	0	0.6282	1	2455	2455		44.531	0	1	109120	+		29292	19845	19897	19969	29681	29681					0.07633256654037268
PGSAGYLLAGA	11	Unmodified	_PGSAGYLLAGA_					0	0	0			REV__MSX1|p.S270L|1|0.4|ENSG00000163132|chr4:4863040-4863040|C/T|missense_variant	REV__MSX1|p.S270L|1|0.4|ENSG00000163132|chr4:4863040-4863040|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7583312988281	2	488.758549	975.502546	-0.51694	-0.00025266	0.21083	0.00010305	-0.30611	-0.00014961	488.7586833375745	35.446	1.0203	35.446	35.129	36.149	0					46	20	3	0	0	0	0.35272	1	13598	13598		56.721	1.9447	1	491760	+		29293	20898	19898	19970	29682	29682					0.013814810348549145
PGSEPMNAI	9	Unmodified	_PGSEPMNAI_					0	0	0			REV__ENST00000395686.7_1_14:53112928-53112961:-|nuORF	REV__ENST00000395686.7_1_14:53112928-53112961:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2148742675781	2	458.21566	914.416767	2.5025	0.0011467	-2.5997	-0.0011912	-0.097137	-4.451E-05	458.2141477144982	42.223	0.17381	42.223	42.122	42.296	0					6	4	2	0	0	0	0.25109	1	16840	16840		55.504	4.1688	1	64775	+		29294	17367	19899	19971	29683	29683					-0.04386427142321736
PGSHGITAM	9	Unmodified	_PGSHGITAM_					0	0	0		nc|ENSG00000169398|Q05397-6|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant	nc|ENSG00000169398|Q05397-6|PTK2	nc|ENSG00000169398|Q05397-6|PTK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.7101745605469	2	435.710545	869.406537	-0.86346	-0.00037622	0.46331	0.00020187	-0.40015	-0.00017435	435.71075750626017	22.387	0.37167	22.387	22.2	22.572	0					17	11	2	0	0	0	0.51817	1	6601	6601		30.504	0	1	132110			29295	6161	19900	19972	29684	29684					-0.03338990076883874
PGSISDKFFQK	11	Unmodified	_PGSISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.5556335449219	3	418.555672	1252.64519	-0.286	-0.00011971	-0.028273	-1.1834E-05	-0.31428	-0.00013154	418.5557152156496	32.78	0.21577	32.78	32.676	32.892	0					8	4	2	0	0	0	0.052273	1	12403	12403		104.07	27.9	1	188820			29296	1815	19901	19973	29685	29685					0.02897068706238315
PGSNAVSSFY	10	Unmodified	_PGSNAVSSFY_					0	0	0		ENST00000569912.1_1_22:40439522-40440098:-|nuORF	ENST00000569912.1_1_22:40439522-40440098:-|nuORF	ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.7384643554688	2	514.737814	1027.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.78	1	34.78	34.28	35.28	0								0	0	0	0.38475	1	11744	11744		35.152	3.1972	1				29297	10788	19902	19974	29686	29686					-0.051556997244460945
PGSPCVAWL	9	Unmodified	_PGSPCVAWL_					0	0	0		ENST00000255082.7_1_11:67414468-67414501:-|nuORF	ENST00000255082.7_1_11:67414468-67414501:-|nuORF	ENST00000255082.7_1_11:67414468-67414501:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.233154296875	2	465.231113	928.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.474	1	43.474	42.974	43.974	0								0	0	0	0.31623	1	17001	17001		31.955	1.6371	1				29298	8257	19903	19975	29687	29687					-0.019412290374248187
PGSQISKKPL	10	Unmodified	_PGSQISKKPL_					0	0	0			REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.816650390625	2	527.816399	1053.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.711	1	19.711	19.211	20.211	0								0	0	0	0.15566	1	6142	6142		69.628	8.6557	1		+		29299	14648	19904	19976	29688	29688					0.09358004885712035
PGSSVSVVSLI	11	Unmodified	_PGSSVSVVSLI_					0	0	0			REV__ENST00000374135.8_1_1:27205919-27206000:-|nuORF	REV__ENST00000374135.8_1_1:27205919-27206000:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8007202148438	2	522.800414	1043.58628	1.6247	0.00084941	-0.95947	-0.00050161	0.66526	0.0003478	522.7999033324065	36.022	0.16689	36.022	35.914	36.081	0					6	3	2	0	0	0	0.58789	1	13975	13975		37.812	0.65241	1	317560	+		29300	18692	19905	19977	29689	29689					0.06622592411918049
PGTALDALGPH	11	Unmodified	_PGTALDALGPH_					0	0	0		ENST00000530405.5_3_11:47204576-47204690:-|nuORF	ENST00000530405.5_3_11:47204576-47204690:-|nuORF	ENST00000530405.5_3_11:47204576-47204690:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7752685546875	2	524.774731	1047.53491	0.58602	0.00030753	0.7538	0.00039558	1.3398	0.0007031	524.7751215439237	32.253	0.25599	32.253	32.115	32.371	0					17	11	3	0	0	0	0.35272	1	10741	10741		56.721	10.749	1	143290			29301	10424	19906	19978	29690	29690					0.013042684378660852
PGTTAVLTQ	9	Unmodified	_PGTTAVLTQ_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000574576.2_1_16:67968465-67968768:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2455139160156	2	444.245275	886.475997	-0.47995	-0.00021322	0.42009	0.00018662	-0.059856	-2.6591E-05	444.24552087559243	15.479	0.25072	15.479	15.414	15.664	0					10	5	3	0	0	0	0.47038	1	4092	4092		35.618	1.4457	1	231920			29302	7739	19907	19979	29691	29691					0.028217921435157223
PGVDQGRGHRI	11	Unmodified	_PGVDQGRGHRI_					0	0	0			REV__ENST00000348261.10_1_16:1257291-1259156:+|nuORF	REV__ENST00000348261.10_1_16:1257291-1259156:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.3211669921875	2	596.320703	1190.62685	1.7637	0.0010517	-0.43441	-0.00025905	1.3293	0.00079268	596.3204267917788	38.686	0.31293	38.686	38.526	38.839	0					17	6	4	0	0	0	0.44903	1	15218	15218		47.96	5.5634	1	879380	+		29303	18491	19908	19980	29692	29692					0.03916371574905497
PGVNNLTGL	9	Unmodified	_PGVNNLTGL_					0	0	0		nc|ENSG00000107807|P31314-2|TLX1;ENSG00000107807|ENST00000370196|TLX1	nc|ENSG00000107807|P31314-2|TLX1	nc|ENSG00000107807|P31314-2|TLX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7451171875	2	442.745442	883.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.536	1	40.536	40.036	41.036	0								0	0	0	0.30504	1	16102	16102		34.173	0	1				29304	2494	19909	19981	29693	29693					0.029932118633610116
PGVPRDAPT	9	Unmodified	_PGVPRDAPT_					0	0	0		ENST00000550376.5_1_12:108154376-108155011:-|nuORF;ENST00000547188.1_1_12:108154376-108154610:-|nuORF	ENST00000550376.5_1_12:108154376-108155011:-|nuORF	ENST00000550376.5_1_12:108154376-108155011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.243408203125	2	455.243067	908.47158	0.18213	8.2915E-05	-0.008866	-4.0362E-06	0.17327	7.8879E-05	455.243063823888	15.93	0.10709	15.93	15.878	15.985	0					6	4	2	0	0	0	0.32741	1	3674	3674		47.916	1.9636	1	41013			29305	10616	19910	19982	29694	29694					0.01368327720592788
PGWVHPRGV	9	Unmodified	_PGWVHPRGV_					0	0	0		nc|ENSG00000149541|O94766-2|B3GAT3;ENST00000532585.5_1_11:62383175-62388587:-|nuORF;ENSG00000149541|ENST00000265471|B3GAT3	nc|ENSG00000149541|O94766-2|B3GAT3	nc|ENSG00000149541|O94766-2|B3GAT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7735595703125	2	502.774868	1003.53518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.384	1	32.384	31.884	32.884	0								0	0	0	0.25856	1	12302	12302		42.474	4.6629	1				29306	4893	19911	19983	29695	29695					0.03355732948375589
PGYKIKSRV	9	Unmodified	_PGYKIKSRV_					0	0	0		ENSG00000146285|ENST00000369020|SCML4	ENSG00000146285|ENST00000369020|SCML4	ENSG00000146285|ENST00000369020|SCML4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.8817443847656	3	349.881831	1046.62366	1.4534	0.00050852	-1.4996	-0.00052468	-0.046179	-1.6157E-05	349.88141813194216	20.47	0.6667	20.47	20.263	20.93	0					17	13	2	0	0	0	0.46194	1	6650	6650		36.447	3.6343	1	1972000			29307	4725	19912	19984	29696	29696					0.10221728468172842
PGYSNLLPPP	10	Unmodified	_PGYSNLLPPP_					0	0	0		ENSG00000204335|ENST00000375281|SP5;SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant	ENSG00000204335|ENST00000375281|SP5;SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant	ENSG00000204335|ENST00000375281|SP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7838134765625	2	527.782025	1053.5495	3.4745	0.0018338	-0.074514	-3.9327E-05	3.4	0.0017945	527.7819993117703	35.304	0.1679	35.304	35.145	35.313	0					5	3	2	0	0	0	0.30737	1	13607	13607		66.429	0.6261	1	1177200			29308	7693;22483	19913	19985	29697	29697					0.024863405860060084
PHAAGLVAD	9	Unmodified	_PHAAGLVAD_					0	0	0			REV__ENSG00000126249|ENST00000246535|PDCD2L	REV__ENSG00000126249|ENST00000246535|PDCD2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.72442626953125	2	425.72451	849.434466	-1.0581	-0.00045047	0.64514	0.00027465	-0.41298	-0.00017582	425.7247864383958	22.911	0.33206	22.911	22.794	23.126	0					21	11	3	0	0	0	0.5654	1	6804	6804		25.45	0	1	386620	+		29309	14461	19914	19986	29698	29698					0.003726561748521817
PHALAAALAQ	10	Unmodified	_PHALAAALAQ_					0	0	0		ENST00000417521.5_1_6:30861115-30864801:+|nuORF	ENST00000417521.5_1_6:30861115-30864801:+|nuORF	ENST00000417521.5_1_6:30861115-30864801:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7763366699219	2	481.774534	961.534515	-0.28837	-0.00013893	3.0397	0.0014645	2.7514	0.0013255	481.7761644484428	17.232	0.12717	17.232	17.189	17.316	0					5	3	2	0	0	0	0.52707	1	4264	4264		42.396	3.59	1	101760			29310	9375	19915	19987	29699	29699					0.05220893508635527
PHALHLPAPP	10	Unmodified	_PHALHLPAPP_					0	0	0		ENST00000426508.6_2_16:1642283-1652410:-|nuORF	ENST00000426508.6_2_16:1642283-1652410:-|nuORF	ENST00000426508.6_2_16:1642283-1652410:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2979125976562	2	525.298176	1048.5818	0.14901	7.8272E-05	-2.0636	-0.001084	-1.9146	-0.0010058	525.2964938392188	39.954	0.21831	39.954	39.923	40.141	0					10	7	2	0	0	0	0.41345	1	15735	15735		54.765	8.7924	1	89695			29311	9447	19916	19988	29700	29700					0.05945172779661334
PHALHLPAPP	10	Unmodified	_PHALHLPAPP_					0	0	0		ENST00000426508.6_2_16:1642283-1652410:-|nuORF	ENST00000426508.6_2_16:1642283-1652410:-|nuORF	ENST00000426508.6_2_16:1642283-1652410:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2985229492188	2	525.298176	1048.5818	-1.2462	-0.0006546	2.1519	0.0011304	0.90572	0.00047577	525.2992083924894	39.778	0.11554	39.778	39.703	39.818	0					11	6	2	0	0	0	0.41345	1	14158	14158		54.765	54.765	1	82230			29312	9447	19916	19988	29701	29701					0.05945172779661334
PHARPAVAL	9	Unmodified	_PHARPAVAL_					0	0	0		ENST00000453424.6_1_10:45952026-45952551:-|nuORF	ENST00000453424.6_1_10:45952026-45952551:-|nuORF	ENST00000453424.6_1_10:45952026-45952551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2761535644531	2	466.277244	930.539935	-1.1826	-0.00055143	-0.95935	-0.00044732	-2.142	-0.00099875	466.27677695504707	28.12	0.24425	28.12	27.98	28.224	0					12	5	3	0	0	0	0.30268	1	10274	10274		50.025	4.0523	1	744060			29313	9665	19917	19989	29702	29702					0.07188617091128435
PHATGGSGSA	10	Unmodified	_PHATGGSGSA_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.19293212890625	2	421.193574	840.372594	-0.92274	-0.00038865	-0.55835	-0.00023517	-1.4811	-0.00062383	421.1933397633052	15.019	0.2711	15.019	14.93	15.201	0					9	6	2	0	0	0	0.7005	1	3794	3794		21.96	0	1	1054300	+		29314	14554	19918	19990	29703	29703					-0.05397695244278111
PHDISNVLK	9	Unmodified	_PHDISNVLK_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2828063964844	2	511.785099	1021.55564	-0.34367	-0.00017588	0.35921	0.00018384	0.015541	7.9535E-06	511.7852116840516	32.704	0.42525	32.704	32.592	33.018	0					22	12	3	0	0	0	0.45358	1	11010	11010		37.159	1.5408	1	243170			29315	6804	19919	19991	29704	29704					0.045728588175165896
PHEAKHYLS	9	Unmodified	_PHEAKHYLS_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.18695068359375	3	361.185691	1080.53524	3.1119	0.001124	0.38446	0.00013886	3.4964	0.0012628	361.1858365010168	32.598	0.60842	32.598	32.438	33.046	0					48	12	5	0	0	0	0.47038	1	12292	12292		35.152	0	1	7786900			29316	2718	19920	19992	29705	29705					-0.001803118423140404
PHEDRKNN	8	Unmodified	_PHEDRKNN_					0	0	0			REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.24493408203125	2	505.244129	1008.47371	2.9343	0.0014825	-1.0667	-0.00053896	1.8676	0.00094359	505.2436204771392	33.176	0.55777	33.176	33.076	33.633	0					29	11	5	0	0	0	0.27512	1	12594	12594		90.777	15.733	1	8640500	+		29317	19713	19921	19993	29706	29706					-0.030192435415756336
PHEKSAAM	8	Unmodified	_PHEKSAAM_					0	0	0			REV__ENST00000452707.1_1_1:27248648-27248801:+|nuORF	REV__ENST00000452707.1_1_1:27248648-27248801:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.7107238769531	2	435.710545	869.406537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.471	1	22.471	21.971	22.971	0								0	0	0	1.7419	1	6699	6699		42.474	0	1		+		29318	19322	19922	19994	29707	29707					-0.03338990076883874
PHFILPLT	8	Unmodified	_PHFILPLT_					0	0	0			REV__ENST00000460323.1_1_1:151275853-151278830:-|nuORF	REV__ENST00000460323.1_1_1:151275853-151278830:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2799377441406	2	469.278921	936.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.669	1	18.669	18.169	19.169	0								0	0	0	1.7419	1	4917	4917		46.766	7.9603	1		+		29319	19367	19923	19995	29708	29708					0.07247867145144937
PHFLYNTL	8	Unmodified	_PHFLYNTL_					0	0	0		tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7637634277344	2	502.763635	1003.51272	0.98935	0.00049741	-1.0825	-0.00054424	-0.093153	-4.6834E-05	502.76313058945135	43.761	0.23968	43.761	43.669	43.908	0					23	12	3	0	0	0	0.54629	1	17080	17080		26.796	0	1	205080			29320	22953	19924	19996	29709	29709					0.01110088760083272
PHGAAIPTK	9	Unmodified	_PHGAAIPTK_					0	0	0			REV__ENST00000558509.5_1_15:78453927-78455839:+|nuORF	REV__ENST00000558509.5_1_15:78453927-78455839:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2558288574219	2	446.255977	890.497401	0.60183	0.00026857	-1.0625	-0.00047414	-0.46066	-0.00020557	446.2554509017199	18.437	0.231	18.437	18.254	18.485	0					9	5	2	0	0	0	0.37197	1	5408	5408		44.117	8.4985	1	176040	+		29321	16117	19925	19997	29710	29710					0.04777221962888234
PHGERLWA	8	Unmodified	_PHGERLWA_					0	0	0			REV__ENST00000476274.6_1_9:130635098-130647547:-|nuORF	REV__ENST00000476274.6_1_9:130635098-130647547:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2494201660156	2	483.251226	964.487899	-1.2816	-0.00061936	-0.48741	-0.00023554	-1.7691	-0.0008549	483.2507303233913	32.651	0.097588	32.651	32.592	32.69	0					6	4	2	0	0	0	0.66372	1	10904	10904		38.806	5.9937	1	50714	+		29322	19536	19926	19998	29711	29711					0.004234536773765285
PHGVVTAN	8	Unmodified	_PHGVVTAN_					0	0	0		P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant	P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant	P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	397.7113952636719	2	397.711402	793.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.877	1	23.877	23.377	24.377	0								0	0	0	1.7419	1	7359	7359		26.796	2.5934	1				29323	11892	19927	19999	29712	29712					0.003283870033783387
PHHHGHQLHHG	11	Unmodified	_PHHHGHQLHHG_					0	0	0			REV__ENSG00000102804|ENST00000458659|TSC22D1	REV__ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	647.3070678710938	2	647.308461	1292.60237	-2.3457	-0.0015184	0.24638	0.00015948	-2.0993	-0.0013589	647.3084904302872	24.312	0.17999	24.312	24.206	24.386	0					7	4	2	0	0	0	0.60833	1	7561	7561		34.173	0	1	178010	+		29324	13647	19928	20000	29713	29713					-0.03222843787966667
PHICNPSTL	9	Unmodified	_PHICNPSTL_					0	0	0		ENST00000366329.6_1_12:123741748-123741847:+|nuORF	ENST00000366329.6_1_12:123741748-123741847:+|nuORF	ENST00000366329.6_1_12:123741748-123741847:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2443542480469	2	491.244752	980.474951	-1.2603	-0.0006191	0.58312	0.00028646	-0.67714	-0.00033264	491.24519564492016	24.497	0.24827	24.497	24.407	24.655	0					18	8	3	0	0	0	0.45358	1	7491	7491		37.159	0	1	168740			29325	8892	19929	20001	29714	29714					-0.016067454970198014
PHKPCLCHW	9	Unmodified	_PHKPCLCHW_					0	0	0			REV__nc|ENSG00000143641|Q10471-2|GALNT2	REV__nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2678833007812	2	560.762589	1119.51063	3.4693	0.0019454	-1.2293	-0.00068934	2.24	0.0012561	560.7617215720102	50.171	0.11185	50.171	50.118	50.23	0					8	5	2	0	0	0	0.36711	1	19827	19827		44.531	8.0843	1	30066	+		29326	21052	19930	20002	29715	29715					-0.04434986521050632
PHLALSTKVP	10	Unmodified	_PHLALSTKVP_					0	0	0			REV__ENST00000476287.3_1_6:170714928-170715078:+|nuORF	REV__ENST00000476287.3_1_6:170714928-170715078:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	354.8817138671875	3	354.88172	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.52	1	18.52	18.02	19.02	0								0	0	0	0.40446	1	4852	4852		33.922	0	1		+		29327	19537	19931	20003	29716	29716					0.09498308748334239
PHLASVGSL	9	Unmodified	_PHLASVGSL_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.74786376953125	2	440.747985	879.481417	-0.56114	-0.00024732	0.33907	0.00014944	-0.22208	-9.7879E-05	440.7481174910093	32.039	0.29205	32.039	31.958	32.25	0					13	8	2	0	0	0	0.35045	1	11112	11112		45.952	0	1	93597			29328	6587	19932	20004	29717	29717					0.03685515726010635
PHLCSAQGLAP	11	Unmodified	_PHLCSAQGLAP_					0	0	0		nc|ENSG00000181409|Q6ZMQ8-2|AATK;nc|ENSG00000181409|Q6ZMQ8-3|AATK;AATK|p.L1059Tfs*5|1|0.32|ENSG00000181409|chr17:81120762-81120763|-/G|frameshift_variant;AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant;ENSG00000181409|ENST00000326724|AATK	nc|ENSG00000181409|Q6ZMQ8-2|AATK	nc|ENSG00000181409|Q6ZMQ8-2|AATK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2741088867188	2	547.276583	1092.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.829	1	34.829	34.329	35.329	0								0	0	0	0.38155	1	12360	12360		40.778	1.5253	1				29329	1	19933	20005	29718	29718					-0.003953850599373254
PHLEQSVNVY	10	Unmodified	_PHLEQSVNVY_					0	0	0			REV__ENST00000564447.5_1_16:29000600-29001330:+|nuORF	REV__ENST00000564447.5_1_16:29000600-29001330:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.8021240234375	2	593.29857	1184.58259	1.5409	0.00091423	-0.13646	-8.0964E-05	1.4045	0.00083326	593.2982978121629	36.628	0.41442	36.628	36.455	36.869	0					27	12	3	0	0	0	0.62235	1	14260	14260		31.53	2.3803	1	271550	+		29330	17564	19934	20006	29719	29719					-0.002320773619430838
PHLGLLMA	8	Unmodified	_PHLGLLMA_					0	0	0		ENST00000462742.1_1_21:45755312-45758250:-|nuORF	ENST00000462742.1_1_21:45755312-45758250:-|nuORF	ENST00000462742.1_1_21:45755312-45758250:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.2453918457031	2	426.244024	850.473494	2.4387	0.0010395	1.8407	0.0007846	4.2794	0.0018241	426.24480785383207	50.593	0.24363	50.593	50.501	50.744	0					21	14	2	0	0	0	0.70073	1	19922	19922		33.493	16.788	1	62356			29331	9746	19935	20007	29720	29720					0.04227665204859932
PHLLCLPL	8	Unmodified	_PHLLCLPL_					0	0	0			REV__CMIP|p.R372C|1|0.25|ENSG00000153815|chr16:81678354-81678354|C/T|missense_variant	REV__CMIP|p.R372C|1|0.25|ENSG00000153815|chr16:81678354-81678354|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2685241699219	2	453.267499	904.520445	0.69154	0.00031345	1.2218	0.00055381	1.9134	0.00086727	453.26811194224	29.533	0.85287	29.533	29.364	30.217	0					63	21	5	0	0	0	0.77013	1	10722	10722		24.504	0	1	57060000	+		29332	12519	19936	20008	29721	29721					0.0643652475602039
PHLVSEQVPK	10	Unmodified	_PHLVSEQVPK_					0	0	0			REV__ENST00000470664.1_1_2:202013700-202014764:+|nuORF	REV__ENST00000470664.1_1_2:202013700-202014764:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.321044921875	2	567.319306	1132.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.546	1	42.546	42.046	43.046	0								0	0	0	0.40862	1	16986	16986		27.882	0	1		+		29333	19472	19937	20009	29722	29722					0.06305103397380662
PHLYASKYL	9	Unmodified	_PHLYASKYL_					0	0	0			REV__TRIM26|p.Q349Sfs*10|1|0.39|ENSG00000234127|chr6:30186451-30186451|G/-|frameshift_variant	REV__TRIM26|p.Q349Sfs*10|1|0.39|ENSG00000234127|chr6:30186451-30186451|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.20111083984375	3	364.53432	1090.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.828	1	15.828	15.328	16.328	0								0	0	0	0.30504	1	3512	3512		34.173	5.0025	1		+		29334	17653	19938	20010	29723	29723					0.039463333399453404
PHMAHVPQVI	10	Unmodified	_PHMAHVPQVI_					0	0	0		ENST00000468920.2_1_12:111893805-111895209:-|nuORF;nc|ENSG00000204842|Q99700-3|ATXN2;ENST00000482777.5_1_12:111893805-111908601:-|nuORF	ENST00000468920.2_1_12:111893805-111895209:-|nuORF	ENST00000468920.2_1_12:111893805-111895209:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8045043945312	2	564.802768	1127.59098	3.4706	0.0019602	-0.29394	-0.00016602	3.1766	0.0017942	564.8026788960847	31.676	0.21594	31.676	31.586	31.802	0					10	4	3	0	0	0	0.57532	1	11863	11863		37.159	2.0071	1	640270			29335	9818	19939	20011	29724	29724					0.03229198073677253
PHMHAYYPAL	10	Unmodified	_PHMHAYYPAL_					0	0	0		nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF	nc|ENSG00000140287|P19113-2|HDC	nc|ENSG00000140287|P19113-2|HDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2894897460938	2	600.286951	1198.55935	0.99041	0.00059453	3.8021	0.0022824	4.7926	0.0028769	600.289063549154	48.785	0.20496	48.785	48.635	48.84	0					15	12	2	0	0	0	0.661	1	18431	18431		26.796	1.222	1	31716			29336	4376	19940	20012	29725	29725					-0.03198794680292849
PHMMKLSL	8	Unmodified	_PHMMKLSL_					0	0	0			REV__ZCCHC9|p.N51Mfs*18|1|0.22|ENSG00000131732|chr5:81304905-81304905|A/-|frameshift_variant	REV__ZCCHC9|p.N51Mfs*18|1|0.22|ENSG00000131732|chr5:81304905-81304905|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.75604248046875	2	478.756441	955.498329	-0.45306	-0.0002169	-1.0514	-0.00050338	-1.5045	-0.00072028	478.7559626712554	34.933	0.21215	34.933	34.852	35.064	0					12	6	3	0	0	0	0.54629	1	13486	13486		55.504	6.0627	1	127960	+		29337	22304	19941	20013	29726	29726					0.018799770159603213
PHNRISPL	8	Unmodified	_PHNRISPL_					0	0	0			REV__nc|nan|A0A1B0GVB3-2|C7orf78	REV__nc|nan|A0A1B0GVB3-2|C7orf78	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2662048339844	2	467.266876	932.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.716	1	19.716	19.216	20.216	0								0	0	0	1.7419	1	5408	5408		35.201	1.6851	1		+		29338	17633	19942	20014	29727	29727					0.050240267114645576
PHPARLVD	8	Unmodified	_PHPARLVD_					0	0	0			REV__RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant	REV__RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7532958984375	2	452.753601	903.49265	-0.11782	-5.3343E-05	-0.33876	-0.00015338	-0.45658	-0.00020672	452.7534539186636	16.041	0.16718	16.041	15.93	16.097	0					8	3	3	0	0	0	0.70055	1	4515	4515		33.516	3.0119	1	311680	+		29339	15727	19943	20015	29728	29728					0.037043378201246924
PHPAVSIDS	9	Unmodified	_PHPAVSIDS_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.7352294921875	2	461.735074	921.455596	-0.12645	-5.8388E-05	0.67787	0.000313	0.55142	0.00025461	461.7353723579082	30.085	0.17867	30.085	30.031	30.21	0					6	4	2	0	0	0	0.50461	1	10211	10211		31.955	2.8053	1	81727			29340	8752	19944	20016	29729	29729					-0.00827378516294175
PHPDGVTD	8	Unmodified	_PHPDGVTD_					0	0	0		L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|18|1|sense	L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|18|1|sense	L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|18|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.1919860839844	2	419.1905	836.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.528	1	37.528	37.028	38.028	0								0	0	0	1.7419	1	14685	14685		50.025	2.1089	1				29341	11285	19945	20017	29730	29730					-0.058282134757973836
PHPLHLIPQ	9	Unmodified	_PHPLHLIPQ_					0	0	0			REV__BRD4|p.Q832H|1|0.15|ENSG00000141867|chr19:15244316-15244316|C/A|missense_variant	REV__BRD4|p.Q832H|1|0.15|ENSG00000141867|chr19:15244316-15244316|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.20648193359375	3	351.206426	1050.59745	-0.83239	-0.00029234	0.86207	0.00030277	0.029681	1.0424E-05	351.2067151170009	21.26	0.36345	21.26	21.157	21.52	0					24	11	3	0	0	0	0.61124	1	6050	6050		20.947	6.0821	1	84788	+		29342	12296	19946	20018	29731	29731					0.07417459296698325
PHPLTSRP	8	Unmodified	_PHPLTSRP_					0	0	0		ENST00000373109.6_1_10:73818878-73819025:-|nuORF	ENST00000373109.6_1_10:73818878-73819025:-|nuORF	ENST00000373109.6_1_10:73818878-73819025:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.75390625	2	452.753601	903.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.892	1	15.892	15.392	16.392	0								0	0	0	1.7419	1	3653	3653		25.45	1.2474	1				29343	8988	19947	20019	29732	29732					0.03704337820136061
PHPNVMPASM	10	Unmodified	_PHPNVMPASM_					0	0	0		ENST00000397620.6_1_15:37388598-37391110:-|nuORF;MEIS2|p.P84Rfs*6|1|0.17|ENSG00000134138|chr15:37096425-37096425|G/-|frameshift_variant;MEIS2|p.K275Nfs*12|1|0.27|ENSG00000134138|chr15:37036889-37036889|T/-|frameshift_variant;nc|ENSG00000134138|O14770-5|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7537231445312	2	540.751887	1079.48922	1.672	0.00090415	1.8353	0.00099243	3.5073	0.0018966	540.7530881735909	26.257	0.23616	26.257	26.162	26.398	0					13	7	3	0	0	0	0.55603	1	7949	7949		39.253	7.723	1	141270			29344	3893	19948	20020	29733	29733					-0.04734416340397729
PHPPGGLQAPA	11	Unmodified	_PHPPGGLQAPA_					0	0	0		ENST00000318080.6_1_9:131857444-131857552:-|nuORF	ENST00000318080.6_1_9:131857444-131857552:-|nuORF	ENST00000318080.6_1_9:131857444-131857552:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.2788696289062	2	521.277441	1040.54033	5.0719	0.0026439	-3.4973	-0.001823	1.5747	0.00082083	521.276126863147	26.918	0.16149	26.918	26.844	27.006	0					7	5	2	0	0	0	0.75945	1	8539	8539		21.96	2.5999	1	32549			29345	8590	19949	20021	29734	29734					0.02167992020326892
PHPPGGLQAPA	11	Unmodified	_PHPPGGLQAPA_					0	0	0		ENST00000318080.6_1_9:131857444-131857552:-|nuORF	ENST00000318080.6_1_9:131857444-131857552:-|nuORF	ENST00000318080.6_1_9:131857444-131857552:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2769775390625	2	521.277441	1040.54033	1.0822	0.00056414	0.082016	4.2753E-05	1.1642	0.00060689	521.2775619049235	27.178	0.41768	27.178	27.072	27.49	0					14	8	3	0	0	0	0.5473	1	9804	9804		40.778	5.1599	1	566700			29346	8590	19949	20021	29735	29735					0.02167992020326892
PHPRPAQL	8	Unmodified	_PHPRPAQL_					0	0	0		ENST00000521249.1_1_14:102695383-102695488:-|nuORF	ENST00000521249.1_1_14:102695383-102695488:-|nuORF	ENST00000521249.1_1_14:102695383-102695488:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2606506347656	2	458.261594	914.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.164	1	43.164	42.664	43.664	0								0	0	0	1.7419	1	17268	17268		54.765	3.4292	1				29347	10309	19950	20022	29736	29736					0.047960440570250285
PHPRPGHC	8	Carbamidomethyl (C)	_PHPRPGHC(Carbamidomethyl (C))_	PHPRPGHC(1)		PHPRPGHC(47)		0	1	0		nc|nan|Q2NKX9-3|C2orf68;ENSG00000168887|ENST00000306336|C2orf68	nc|nan|Q2NKX9-3|C2orf68	nc|nan|Q2NKX9-3|C2orf68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.74188232421875	2	479.227228	956.439903	-0.66249	-0.00031748	-2.871	-0.0013759	-3.5335	-0.0016933	479.22607421124707	15.656	0.26897	15.656	15.546	15.815	0					8	5	2	0	0	0	0.61433	1	4166	4166		46.766	7.5136	1	76620			29348	6133	19951	20023	29737	29737	258				-0.040059435143120936
PHPTMPAQ	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))PHPTM(Oxidation (M))PAQ_		PHPTM(1)PAQ		PHPTM(42)PAQ	1	0	1			REV__ENST00000564315.1_1_16:70516583-70530267:-|nuORF	REV__ENST00000564315.1_1_16:70516583-70530267:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.71392822265625	2	468.715827	935.417102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.375	1	44.375	43.875	44.875	0								0	0	0	1.7419	1	17778	17778		42.474	8.9589	1		+		29349	20323	19952	20024	29738	29738		734			-0.053190074224630735
PHPTVESL	8	Unmodified	_PHPTVESL_					0	0	0			REV__ENST00000331483.8_1_17:79801637-79801865:-|nuORF	REV__ENST00000331483.8_1_17:79801637-79801865:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.23211669921875	2	440.232168	878.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.122	1	43.122	42.622	43.622	0								0	0	0	1.7419	1	16894	16894		79.939	5.6842	1		+		29350	18382	19953	20025	29739	29739					0.005695229720345196
PHPVLKHS	8	Unmodified	_PHPVLKHS_					0	0	0		ENST00000469147.5_1_2:3471435-3471660:+|nuORF	ENST00000469147.5_1_2:3471435-3471660:+|nuORF	ENST00000469147.5_1_2:3471435-3471660:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7658386230469	2	457.763969	913.513385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.628	1	46.628	46.128	47.128	0								0	0	0	1.7419	1	17900	17900		25.45	0	1				29351	9821	19954	20026	29740	29740					0.05316928199806625
PHPVSTGG	8	Unmodified	_PHPVSTGG_					0	0	0		ENST00000443619.6_1_2:65541275-65559155:-|nuORF	ENST00000443619.6_1_2:65541275-65559155:-|nuORF	ENST00000443619.6_1_2:65541275-65559155:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.19012451171875	2	376.190303	750.366053	-0.12632	-4.7519E-05	0.40164	0.00015109	0.27533	0.00010358	376.19036572803645	18.338	0.21528	18.338	18.235	18.45	0					10	6	2	0	0	0	0.67475	1	4775	4775		37.028	0	1	98061			29352	9600	19955	20027	29741	29741					-0.01911588404993836
PHQASPTL	8	Unmodified	_PHQASPTL_					0	0	0		ENST00000532354.1_1_11:6340395-6341123:-|nuORF	ENST00000532354.1_1_11:6340395-6341123:-|nuORF	ENST00000532354.1_1_11:6340395-6341123:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.72430419921875	2	425.72451	849.434466	-0.73402	-0.00031249	0.10709	4.559E-05	-0.62694	-0.0002669	425.7246356744587	23.17	0.1839	23.17	23.08	23.263	0					12	4	3	0	0	0	0.60719	1	7642	7642		47.916	5.4411	1	625240			29353	10450	19956	20028	29742	29742					0.003726561748521817
PHQASPTL	8	Unmodified	_PHQASPTL_					0	0	0		ENST00000532354.1_1_11:6340395-6341123:-|nuORF	ENST00000532354.1_1_11:6340395-6341123:-|nuORF	ENST00000532354.1_1_11:6340395-6341123:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.7242736816406	2	425.72451	849.434466	-0.054532	-2.3216E-05	-0.20016	-8.5211E-05	-0.25469	-0.00010843	425.72441183368994	22.955	0.22491	22.955	22.869	23.094	0					9	5	2	0	0	0	0.65276	1	6922	6922		40.573	7.057	1	228720			29354	10450	19956	20028	29743	29743					0.003726561748521817
PHQLVQHATY	10	Unmodified	_PHQLVQHATY_					0	0	0			REV__nc|ENSG00000163673|Q9C098|DCLK3	REV__nc|ENSG00000163673|Q9C098|DCLK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	597.3069458007812	2	597.306729	1192.59891	0.13556	8.0969E-05	-0.14028	-8.3792E-05	-0.004727	-2.8234E-06	597.3068534736935	26.919	0.20108	26.919	26.811	27.012	0					10	6	2	0	0	0	0.54197	1	8235	8235		40.778	1.5253	1	71099	+		29355	15905	19957	20029	29744	29744					0.01031048594791173
PHRGLPAAL	9	Unmodified	_PHRGLPAAL_					0	0	0			REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2760925292969	2	466.277244	930.539935	-1.1617	-0.00054168	-0.95597	-0.00044575	-2.1177	-0.00098743	466.2766678348661	27.881	0.17775	27.881	27.782	27.96	0					12	6	3	0	0	0	0.51817	1	8922	8922		30.504	2.2494	1	141540	+		29356	18678	19958	20030	29745	29745					0.07188617091128435
PHRHDLEN	8	Unmodified	_PHRHDLEN_					0	0	0		sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1;sp|F5HG95|US29_HCMVMUncharacterizedproteinUS29OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US29PE=3SV=1	sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.24835205078125	2	509.246672	1016.47879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.702	1	27.702	27.202	28.202	0								0	0	0	1.7419	1	9097	9097		44.117	4.864	1				29357	22453	19959	20031	29746	29746					-0.028789396789534294
PHRLIQFI	8	Unmodified	_PHRLIQFI_					0	0	0			REV__ENST00000484846.1_1_11:64623516-64624089:-|nuORF	REV__ENST00000484846.1_1_11:64623516-64624089:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.3079833984375	2	512.308544	1022.60253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.049	1	42.049	41.549	42.549	0								0	0	0	1.7419	1	16522	16522		50.025	2.1089	1		+		29358	19643	19960	20032	29747	29747					0.09213763159323207
PHRNVRKTK	9	Unmodified	_PHRNVRKTK_					0	0	0		RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant;nc|ENSG00000159788|O14924-5|RGS12;RGS12|p.K1178Nfs*32|1|0.71|ENSG00000159788|chr4:3428672-3428672|A/-|frameshift_variant;RGS12|p.Q1292Rfs*49|1|0.23|ENSG00000159788|chr4:3430704-3430704|C/-|frameshift_variant;nc|ENSG00000159788|O14924-4|RGS12;RGS12|p.Q1363Rfs*30|1|0.3|ENSG00000159788|chr4:3430923-3430923|C/-|frameshift_variant;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF;RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.2328186035156	3	379.231746	1134.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.591	1	41.591	41.091	42.091	0								0	0	0	0.38404	1	15802	15802		15.642	2.1339	1				29359	5331	19961	20033	29748	29748					0.11145856196822024
PHRPIVKQL	9	Unmodified	_PHRPIVKQL_					0	0	0			REV__ENST00000519890.5_1_5:158126121-158500600:-|nuORF	REV__ENST00000519890.5_1_5:158126121-158500600:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.2287902832031	3	363.229342	1086.6662	-2.0556	-0.00074667	0.5128	0.00018627	-1.5428	-0.0005604	363.22954675461233	20.867	0.11077	20.867	20.808	20.919	0					4	2	2	0	0	0	0.36892	1	5958	5958		44.377	44.377	1	124420	+		29360	15985	19962	20034	29749	29749					0.12633123596424412
PHRPLGLL	8	Unmodified	_PHRPLGLL_					0	0	0			REV__PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant	REV__PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7807312011719	2	451.782162	901.549771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.79	1	40.79	40.29	41.29	0								0	0	0	1.7419	1	13629	13629		35.201	0	1		+		29361	21365	19963	20035	29750	29750					0.09505805096512177
PHRPLGLL	8	Unmodified	_PHRPLGLL_					0	0	0			REV__PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant	REV__PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7814025878906	2	451.782162	901.549771	0.71209	0.00032171	-3.131	-0.0014145	-2.4189	-0.0010928	451.78046502236	41.591	0.21125	41.591	41.508	41.719	0					10	8	2	0	0	0	0.68754	1	16339	16339		35.201	0	1	53137	+		29362	21365	19963	20035	29751	29751					0.09505805096512177
PHRSYVSTM	9	Oxidation (M)	_PHRSYVSTM(Oxidation (M))_		PHRSYVSTM(1)		PHRSYVSTM(51)	0	0	1		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2609252929688	2	547.258391	1092.50223	3.8261	0.0020939	0.55985	0.00030638	4.386	0.0024003	547.2587794551722	43.041	0.89967	43.041	42.725	43.625	0					66	29	3	0	0	0	0.2873	1	17123	17123		51.335	10.557	1	328370			29363	4391	19964	20036	29752	29752		179			-0.040322619566723006
PHSCFMSEL	9	Unmodified	_PHSCFMSEL_					0	0	0			REV__ENSG00000196584|ENST00000359321|XRCC2	REV__ENSG00000196584|ENST00000359321|XRCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7227783203125	2	525.722795	1049.43104	0.098175	5.1613E-05	-0.62829	-0.0003303	-0.53011	-0.00027869	525.7226725188018	29.567	0.29992	29.567	29.434	29.734	0					17	7	4	0	0	0	0.35045	1	10582	10582		45.952	3.5558	1	420910	+		29364	17273	19965	20037	29753	29753					-0.09170097985679604
PHSPLVGL	8	Unmodified	_PHSPLVGL_					0	0	0			REV__ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant	REV__ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.2393798828125	2	410.239796	818.465038	1.1188	0.00045897	-1.4383	-0.00059005	-0.31953	-0.00013108	410.2391642660303	36.897	0.35546	36.897	36.771	37.127	0					22	11	3	0	0	0	0.68754	1	14381	14381		35.201	5.3592	1	479920	+		29365	12055	19966	20038	29754	29754					0.04854434559899801
PHSPPGIP	8	Unmodified	_PHSPPGIP_					0	0	0		ENST00000492715.1_1_X:48457171-48457486:+|nuORF	ENST00000492715.1_1_X:48457171-48457486:+|nuORF	ENST00000492715.1_1_X:48457171-48457486:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2161865234375	2	401.216321	800.418088	-0.39612	-0.00015893	0.19579	7.8554E-05	-0.20033	-8.0377E-05	401.2163961294028	30.243	1.2376	30.243	29.762	30.999	0					79	30	4	0	0	0	0.29779	1	10925	10925		83.287	8.7706	1	4315400			29366	10083	19967	20039	29755	29755					0.009895750087707711
PHSPVASG	8	Unmodified	_PHSPVASG_					0	0	0		ENST00000411463.2_2_8:23146028-23146572:+|nuORF	ENST00000411463.2_2_8:23146028-23146572:+|nuORF	ENST00000411463.2_2_8:23146028-23146572:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.1902770996094	2	376.190303	750.366053	0.27666	0.00010408	-0.23486	-8.8353E-05	0.0418	1.5725E-05	376.19019622697135	18.556	0.43349	18.556	18.369	18.803	0					26	10	4	0	0	0	0.6282	1	5419	5419		44.531	7.5026	1	3586700			29367	9310	19968	20040	29756	29756					-0.01911588404993836
PHSPVASG	8	Unmodified	_PHSPVASG_					0	0	0		ENST00000411463.2_2_8:23146028-23146572:+|nuORF	ENST00000411463.2_2_8:23146028-23146572:+|nuORF	ENST00000411463.2_2_8:23146028-23146572:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	376.1903381347656	2	376.190303	750.366053	-1.0826	-0.00040728	0.86468	0.00032529	-0.21795	-8.1992E-05	376.1905818023344	18.271	0.2681	18.271	18.15	18.418	0					24	10	3	0	0	0	0.74117	1	4711	4711		28.254	0	1	458010			29368	9310	19968	20040	29757	29757					-0.01911588404993836
PHSQVSSI	8	Unmodified	_PHSQVSSI_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.7217712402344	2	427.721967	853.429381	-0.41047	-0.00017557	-0.097261	-4.1601E-05	-0.50773	-0.00021717	427.72198146871426	24.088	0.16688	24.088	23.981	24.147	0					5	3	2	0	0	0	0.41701	1	8271	8271		68.787	0	1	253170	+		29369	13329	19969	20041	29758	29758					-0.0031964768775196717
PHTVDAGL	8	Unmodified	_PHTVDAGL_					0	0	0			REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant;REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.2110595703125	2	405.211235	808.407917	0.61683	0.00024995	-0.9777	-0.00039618	-0.36087	-0.00014623	405.210959568124	24.791	0.2469	24.791	24.684	24.931	0					10	7	2	0	0	0	0.72892	1	7398	7398		29.842	0	1	87205	+		29370	13458;12110	19970	20042	29759	29759					-0.003950327164830014
PHVGALRAL	9	Unmodified	_PHVGALRAL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.28466796875	2	467.285069	932.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.077	1	25.077	24.577	25.577	0								0	0	0	0.25856	1	7920	7920		42.474	3.6683	1				29371	6273	19971	20043	29760	29760					0.08660903608188164
PHVPPDGSEL	10	Unmodified	_PHVPPDGSEL_					0	0	0		ENST00000437840.6_1_6:33264453-33266669:-|nuORF;ENST00000478610.5_1_6:33264453-33265760:-|nuORF;ENST00000494550.5_1_6:33264453-33265064:-|nuORF	ENST00000437840.6_1_6:33264453-33266669:-|nuORF	ENST00000437840.6_1_6:33264453-33266669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.26123046875	2	524.258914	1046.50327	3.4293	0.0017978	0.88272	0.00046278	4.312	0.0022606	524.25925802718	36.854	0.50652	36.854	36.647	37.154	0					27	10	3	0	0	0	0.46215	1	14347	14347		49.442	1.7842	1	1103700			29372	9541	19972	20044	29761	29761					-0.018117243160759244
PHVSGLSQ	8	Unmodified	_PHVSGLSQ_					0	0	0		GPR142|p.C153Vfs*24|1|0.29|ENSG00000257008|chr17:74370618-74370618|G/-|frameshift_variant;ENSG00000257008|ENST00000582579|GPR142;nc|ENSG00000257008|Q7Z601|GPR142	GPR142|p.C153Vfs*24|1|0.29|ENSG00000257008|chr17:74370618-74370618|G/-|frameshift_variant	GPR142|p.C153Vfs*24|1|0.29|ENSG00000257008|chr17:74370618-74370618|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.7167053222656	2	412.716685	823.418816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.703	1	16.703	16.203	17.203	0								0	0	0	1.7419	1	4679	4679		47.916	0	1				29373	8030	19973	20045	29762	29762					4.369657813185768E-05
PHVSLFVGGL	10	Unmodified	_PHVSLFVGGL_					0	0	0		ENSG00000145214|ENST00000273814|DGKQ	ENSG00000145214|ENST00000273814|DGKQ	ENSG00000145214|ENST00000273814|DGKQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2933959960938	2	513.292559	1024.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.35	1	48.35	47.85	48.85	0								0	0	0	0.2708	1	19221	19221		55.504	4.1688	1				29374	4659	19974	20046	29763	29763					0.05926350685535908
PHYHSFDG	8	Unmodified	_PHYHSFDG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.20379638671875	2	480.203941	958.39333	-1.3911	-0.000668	0.66054	0.0003172	-0.73053	-0.0003508	480.2043533185135	20.217	0.14305	20.217	20.189	20.332	0					6	5	2	0	0	0	0.59411	1	5615	5615		50.025	7.5501	1	128320			29375	11803	19975	20047	29764	29764					-0.0875310486461558
PHYHSFDG	8	Unmodified	_PHYHSFDG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2034606933594	2	480.203941	958.39333	0.67338	0.00032336	-1.3058	-0.00062703	-0.63238	-0.00030367	480.2033067313514	20.419	0.46614	20.419	20.364	20.83	0					14	9	3	0	0	0	0.24777	1	6629	6629		105.27	42.29	1	732870			29376	11803	19975	20047	29765	29765					-0.0875310486461558
PHYHSFDG	8	Unmodified	_PHYHSFDG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2038879394531	2	480.203941	958.39333	-2.9252	-0.0014047	2.8979	0.0013916	-0.02728	-1.31E-05	480.2055398265933	20.305	0.183	20.305	20.251	20.434	0					5	4	2	0	0	0	0.25001	1	5692	5692		101.21	27.237	1	128510			29377	11803	19975	20047	29766	29766					-0.0875310486461558
PHYTTFDG	8	Unmodified	_PHYTTFDG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.20587158203125	2	469.20615	936.397747	-1.1794	-0.00055337	0.59202	0.00027778	-0.58736	-0.00027559	469.20643195883866	26.976	0.3053	26.976	26.866	27.171	0					16	10	3	0	0	0	0.25485	1	8533	8533		97.473	40.752	1	260370			29378	11803	19976	20048	29767	29767					-0.07299640441704014
PHYTTFDG	8	Unmodified	_PHYTTFDG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2060852050781	2	469.20615	936.397747	0.62348	0.00029254	-1.1174	-0.00052428	-0.49389	-0.00023173	469.20565986503425	27.212	0.46515	27.212	27.104	27.569	0					17	9	3	0	0	0	0.22885	1	9843	9843		123.99	52.111	1	1590100			29379	11803	19976	20048	29768	29768					-0.07299640441704014
PHYTTFDG	8	Unmodified	_PHYTTFDG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2056579589844	2	469.20615	936.397747	-2.1889	-0.001027	2.062	0.00096752	-0.12685	-5.9519E-05	469.20702448275136	27.01	0.27958	27.01	26.928	27.208	0					13	7	2	0	0	0	0.25485	1	8785	8785		97.473	23.498	1	203760			29380	11803	19976	20048	29769	29769					-0.07299640441704014
PHYVTLDG	8	Unmodified	_PHYVTLDG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.R2087Q|1|0.33|ENSG00000275395|chr19:39893107-39893107|C/T|missense_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.22406005859375	2	451.224342	900.434132	-1.1904	-0.00053713	0.5143	0.00023206	-0.6761	-0.00030507	451.22460718609557	29.024	0.28154	29.024	28.908	29.19	0					21	11	3	0	0	0	0.39542	1	9417	9417		71.378	21.353	1	236220			29381	11803	19977	20049	29770	29770					-0.020067635449890986
PHYVTLDGH	9	Unmodified	_PHYVTLDGH_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.R2087Q|1|0.33|ENSG00000275395|chr19:39893107-39893107|C/T|missense_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.8380126953125	3	346.838291	1037.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.605	1	25.605	25.105	26.105	0								0	0	0	0.27166	1	9109	9109		39.253	1.7447	1				29382	11803	19978	20050	29771	29771					-0.024202872506748463
PICTSFTKS	9	Unmodified	_PICTSFTKS_					0	0	0			REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2472839355469	2	492.24696	982.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.966	1	28.966	28.466	29.466	0								0	0	0	0.28666	1	9098	9098		37.812	3.639	1		+		29383	17399	19979	20051	29772	29772					-0.012572810741176
PIDVAMSS	8	Unmodified	_PIDVAMSS_					0	0	0		ASB5|p.T274M|1|0.28|ENSG00000164122|chr4:176216859-176216859|G/A|missense_variant	ASB5|p.T274M|1|0.28|ENSG00000164122|chr4:176216859-176216859|G/A|missense_variant	ASB5|p.T274M|1|0.28|ENSG00000164122|chr4:176216859-176216859|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	410.1979675292969	2	410.199479	818.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.629	1	17.629	17.129	18.129	0								0	0	0	1.7419	1	4434	4434		20.482	1.1219	1				29384	239	19980	20052	29773	29773					-0.03205214545300805
PIEGWAVVY	9	Unmodified	_PIEGWAVVY_					0	0	0		ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107	ENST00000493417.5_1_9:132839594-132891041:+|nuORF	ENST00000493417.5_1_9:132839594-132891041:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2696533203125	2	517.271293	1032.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.805	1	34.805	34.305	35.305	0								0	0	0	0.27166	1	12999	12999		40.573	2.7611	1				29385	4826	19981	20053	29774	29774					0.0130695555726561
PIGFIPNLN	9	Unmodified	_PIGFIPNLN_					0	0	0			REV__RALBP1|p.K187N|1|0.09|ENSG00000017797|chr18:9517161-9517161|A/C|missense_variant	REV__RALBP1|p.K187N|1|0.09|ENSG00000017797|chr18:9517161-9517161|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.8552551269531	3	328.855282	983.544017	0.52741	0.00017344	-0.68587	-0.00022555	-0.15846	-5.2109E-05	328.85504522174284	34.99	0.32082	34.99	34.871	35.192	0					15	8	2	0	0	0	0.5654	1	13089	13089		19.104	0	1	481320	+		29386	21443	19982	20054	29775	29775					0.05158661794177988
PIGLFCDCTF	10	Unmodified	_PIGLFCDCTF_					0	0	0		CNTNAP4|p.F982L|1|0.08|ENSG00000152910|chr16:76535735-76535735|C/A|missense_variant	CNTNAP4|p.F982L|1|0.08|ENSG00000152910|chr16:76535735-76535735|C/A|missense_variant	CNTNAP4|p.F982L|1|0.08|ENSG00000152910|chr16:76535735-76535735|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.24951171875	2	558.248646	1114.48274	1.8252	0.0010189	-0.89504	-0.00049965	0.93017	0.00051927	558.2479949174129	33.541	3.4458	33.541	33.332	36.778	0					179	70	3	0	0	0	0.51121	1	12945	12945		44.117	2.6902	1	25614000			29387	583	19983	20055	29776	29776					-0.06992354291787706
PIGVQIACI	9	Unmodified	_PIGVQIACI_					0	0	0			REV__ENSG00000149054|ENST00000278319|ZNF215	REV__ENSG00000149054|ENST00000278319|ZNF215	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2640686035156	2	457.262413	912.510274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.666	1	54.666	54.166	55.166	0								0	0	0	0.31623	1	20829	20829		31.955	2.1133	1		+		29388	15402	19984	20056	29777	29777					0.05051917030777986
PIHALLGA	8	Unmodified	_PIHALLGA_					0	0	0			REV__sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	REV__sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.2424621582031	2	396.242338	790.470124	0.3983	0.00015782	-0.41068	-0.00016273	-0.012377	-4.9043E-06	396.2421284332268	25.506	0.57359	25.506	25.144	25.718	0					29	11	4	0	0	0	0.63381	1	8882	8882		43.626	6.5976	1	2248800	+		29389	21580	19985	20057	29778	29778					0.06650738422524682
PIHQLSSTI	9	Unmodified	_PIHQLSSTI_					0	0	0		nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2;CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant;ENST00000507430.1_1_5:11364802-11385035:-|nuORF	nc|ENSG00000169862|Q9UQB3-2|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7774963378906	2	498.279649	994.544745	-2.23	-0.0011112	3.9146	0.0019506	1.6846	0.00083939	498.28303531804613	29.498	0.28313	29.498	29.443	29.726	0					13	7	3	0	0	0	0.53083	1	10009	10009		29.15	1.2673	1	181900			29390	6190	19986	20058	29779	29779					0.04725456443236453
PIIATSNGNLV	11	Unmodified	_PIIATSNGNLV_					0	0	0		ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8116455078125	2	549.811313	1097.60807	0.56638	0.0003114	0.25194	0.00013852	0.81832	0.00044992	549.8115041174356	28.864	0.21676	28.864	28.758	28.975	0					11	4	3	0	0	0	0.58789	1	10521	10521		37.812	2.1932	1	270220			29391	7457	19987	20059	29780	29780					0.06317397160455585
PIIRECTLD	9	Unmodified	_PIIRECTLD_					0	0	0			REV__tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1	REV__tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.279541015625	2	530.278792	1058.54303	2.3771	0.0012605	-1.3075	-0.00069332	1.0697	0.00056721	530.2783240046925	34.119	0.34841	34.119	33.881	34.23	0					12	9	2	0	0	0	0.57706	1	12708	12708		24.203	0.68005	1	48985	+		29392	21842	19988	20060	29781	29781					0.016100793629675536
PIISNQEFH	9	Unmodified	_PIISNQEFH_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7764892578125	2	542.774731	1083.53491	2.0226	0.0010978	1.3065	0.00070915	3.3291	0.001807	542.7755006080822	19.237	0.21468	19.237	19.129	19.343	0					9	4	3	0	0	0	0.40353	1	5923	5923		42.396	9.5837	1	907540	+		29393	15642	19989	20061	29782	29782					-0.003517315621365924
PIKIVHSESQ	10	Unmodified	_PIKIVHSESQ_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.8184814453125	2	569.316763	1136.61897	1.9732	0.0011234	-2.2173	-0.0012624	-0.24416	-0.00013901	569.3152981094728	39.716	0.232	39.716	39.6	39.832	0					15	8	3	0	0	0	0.44292	1	15608	15608		31.53	0	1	82596			29394	4757	19990	20062	29783	29783					0.056127995347424076
PIKLKLIFI	9	Unmodified	_PIKLKLIFI_					0	0	0		nc|ENSG00000128918|O94788-3|ALDH1A2	nc|ENSG00000128918|O94788-3|ALDH1A2	nc|ENSG00000128918|O94788-3|ALDH1A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.253662109375	3	362.254606	1083.74199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.901	1	46.901	46.401	47.401	0								0	0	0	0.40728	1	14936	14936		5.5578	0.94527	1				29395	11516	19991	20063	29784	29784					0.20346707723979307
PILFASAALAL	11	Unmodified	_PILFASAALAL_					0	0	0		ENSG00000159164|ENST00000369146|SV2A	ENSG00000159164|ENST00000369146|SV2A	ENSG00000159164|ENST00000369146|SV2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.336669921875	2	543.831517	1085.64848	0.39566	0.00021517	1.3006	0.00070731	1.6963	0.00092248	543.8322582047666	19.317	0.41119	19.317	19.215	19.626	0					29	12	3	0	0	0	0.67983	1	5343	5343		34.173	12.213	1	808900			29396	5299	19992	20064	29785	29785					0.10908363550879585
PILVPLQEF	9	Unmodified	_PILVPLQEF_					0	0	0		ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6	ENSG00000185250|ENST00000521072|PPIL6	ENSG00000185250|ENST00000521072|PPIL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.3087158203125	2	528.310418	1054.60628	-1.1826	-0.0006248	-0.60197	-0.00031802	-1.7846	-0.00094283	528.3101935523916	39.803	0.17261	39.803	39.757	39.93	0					16	9	2	0	0	0	0.43426	1	14195	14195		38.806	5.2906	1	54432			29397	7067	19993	20065	29786	29786					0.08116388142502728
PILYLNGVV	9	Unmodified	_PILYLNGVV_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;DLG5|p.P861Qfs*32|1|0.31|ENSG00000151208|chr10:77821902-77821902|G/-|frameshift_variant;DLG5|p.P1167Rfs*16|1|0.62|ENSG00000151208|chr10:77819921-77819921|G/-|frameshift_variant;nc|ENSG00000151208|Q8TDM6-3|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.29608154296875	2	494.29731	986.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.365	1	20.365	19.865	20.865	0								0	0	0	0.38735	1	5674	5674		14.664	0	1				29398	799	19994	20066	29787	29787					0.08624118971033568
PIMFAGGGHSQ	11	Unmodified	_PIMFAGGGHSQ_					0	0	0			REV__ENSG00000174358|ENST00000304460|SLC6A19	REV__ENSG00000174358|ENST00000304460|SLC6A19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2603759765625	2	551.260933	1100.50731	0.57531	0.00031715	-1.381	-0.0007613	-0.80571	-0.00044416	551.2605613879373	11.345	0.080667	11.345	11.286	11.367	0					6	4	2	0	0	0	0.63135	1	2182	2182		34.173	8.5985	1	101740	+		29399	16564	19995	20067	29788	29788					-0.03891958094027359
PINKDLLM	8	Unmodified	_PINKDLLM_					0	0	0			REV__ENST00000558482.5_1_15:64221904-64332460:-|nuORF	REV__ENST00000558482.5_1_15:64221904-64332460:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2679748535156	2	472.267696	942.520839	-0.16622	-7.8501E-05	-0.033005	-1.5587E-05	-0.19923	-9.4088E-05	472.2677539265136	32.525	0.19577	32.525	32.428	32.623	0					11	6	2	0	0	0	0.68432	1	11298	11298		35.618	2.1027	1	94702	+		29400	12669	19996	20068	29789	29789					0.04727899685212833
PIQIQSQNP	9	Unmodified	_PIQIQSQNP_					0	0	0			REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.77490234375	2	512.774731	1023.53491	0.49619	0.00025444	0.20432	0.00010477	0.70051	0.0003592	512.7748485660593	29.537	0.25063	29.537	29.415	29.666	0					16	6	4	0	0	0	0.37744	1	9944	9944		44.377	12.422	1	353710	+		29401	19168	19997	20069	29790	29790					0.02408268437852712
PIQPIGNN	8	Unmodified	_PIQPIGNN_					0	0	0			REV__YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	REV__YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.73211669921875	2	426.732335	851.450116	0.27259	0.00011632	-0.010802	-4.6095E-06	0.26179	0.00011171	426.73232213350155	27.328	0.21008	27.328	27.233	27.443	0					12	8	2	0	0	0	0.6282	1	8394	8394		44.531	14.69	1	41494	+		29402	13009	19998	20070	29791	29791					0.01844942691900542
PIQSHLPLIQ	10	Unmodified	_PIQSHLPLIQ_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9;REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	REV__DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.5606994628906	3	382.560758	1144.66044	-0.54432	-0.00020824	0.44349	0.00016966	-0.10083	-3.8574E-05	382.56090939352345	31.926	0.51938	31.926	31.667	32.186	0					30	10	4	0	0	0	0.56063	1	11950	11950		30.139	0	1	1202400	+		29403	14823;12704	19999	20071	29792	29792					0.09389980294099587
PIRPTVTSL	9	Unmodified	_PIRPTVTSL_					0	0	0			REV__ENSG00000145375|ENST00000274008|SPATA5	REV__ENSG00000145375|ENST00000274008|SPATA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2981262207031	2	492.297842	982.581131	0.58825	0.00028959	-1.6167	-0.00079591	-1.0285	-0.00050632	492.29733793756236	37.79	0.62557	37.79	37.455	38.081	0					60	20	4	0	0	0	0.42902	1	14881	14881		39.253	2.0937	1	1002700	+		29404	15269	20000	20072	29793	29793					0.08914333339953373
PISDHVLTM	9	Unmodified	_PISDHVLTM_					0	0	0		ENST00000553690.5_1_14:72924992-72931412:+|nuORF;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-8|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-2|RGS6;ENSG00000182732|ENST00000553525|RGS6	ENST00000553690.5_1_14:72924992-72931412:+|nuORF	ENST00000553690.5_1_14:72924992-72931412:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.75982666015625	2	506.760235	1011.50592	-1.9422	-0.00098425	1.946	0.00098617	0.0037835	1.9174E-06	506.76108083156555	34.149	0.19794	34.149	34.083	34.281	0					9	6	2	0	0	0	0.1236	1	12073	12073		73.975	2.679	1	73367			29405	6916	20001	20073	29794	29794					0.0006240781721089661
PITHLKGP	8	Unmodified	_PITHLKGP_					0	0	0			REV__ENST00000578515.5_1_17:8785060-8814811:-|nuORF	REV__ENST00000578515.5_1_17:8785060-8814811:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.26251220703125	2	431.760895	861.507237	0.20123	8.6885E-05	0.53711	0.0002319	0.73834	0.00031879	431.76090281335246	13.409	0.22657	13.409	13.241	13.468	0					19	13	2	0	0	0	0.63077	1	2701	2701		44.117	1.7207	1	42322	+		29406	15120	20002	20074	29795	29795					0.07094409968271975
PITYNPNDL	9	Unmodified	_PITYNPNDL_					0	0	0			REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant	REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7630004882812	2	523.761289	1045.50803	3.4224	0.0017925	-0.27834	-0.00014578	3.1441	0.0016468	523.7608522820684	29.923	0.50767	29.923	29.472	29.98	0					20	10	4	0	0	0	0.0792	1	11028	11028		84.916	16.129	1	736960	+		29407	12112	20003	20075	29796	29796					-0.01290840173351171
PIWLVSDNL	9	Unmodified	_PIWLVSDNL_					0	0	0			REV__ST8SIA4|p.F303Lfs*8|1|0.06|ENSG00000113532|chr5:100812021-100812022|-/TGTGTAAA|frameshift_variant	REV__ST8SIA4|p.F303Lfs*8|1|0.06|ENSG00000113532|chr5:100812021-100812022|-/TGTGTAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7879638671875	2	528.78985	1055.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.943	1	17.943	17.443	18.443	0								0	0	0	0.34228	1	5156	5156		26.796	1.3459	1		+		29408	14044	20004	20076	29797	29797					0.03958627103043
PIWSTSDH	8	Unmodified	_PIWSTSDH_					0	0	0			REV__ENST00000310118.8_1_3:184025202-184025241:+|nuORF	REV__ENST00000310118.8_1_3:184025202-184025241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7208557128906	2	471.719424	941.424296	3.7888	0.0017872	-0.92635	-0.00043698	2.8624	0.0013503	471.71926549671826	25.674	0.53588	25.674	25.479	26.015	0					26	13	3	0	0	0	0.74117	1	7966	7966		28.254	1.4582	1	241220	+		29409	18264	20005	20077	29798	29798					-0.04875951550366153
PKALLSDAG	9	Unmodified	_PKALLSDAG_					0	0	0			REV__TRRAP-ASNS|1|fusion	REV__TRRAP-ASNS|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2481384277344	2	436.247818	870.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.528	1	23.528	23.028	24.028	0								0	0	0	0.32356	1	7803	7803		30.504	6.3009	1		+		29410	17246	20006	20078	29799	29799					0.04066096006135922
PKAVSKQAA	9	Unmodified	_PKAVSKQAA_					0	0	0		GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant;GPR179|p.K1289Rfs*12|1|0.29|ENSG00000277399|chr17:38329703-38329703|T/-|frameshift_variant;GPR179|p.R1290Efs*59|1|0.25|ENSG00000277399|chr17:38329702-38329703|-/T|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2689514160156	2	450.269084	898.523616	2.539	0.0011432	-2.7654	-0.0012452	-0.22638	-0.00010193	450.26775037359755	12.444	0.15546	12.444	12.371	12.526	0					6	4	2	0	0	0	0.61124	1	2652	2652		10.866	2.0432	1	162890			29411	8115	20007	20079	29800	29800					0.07029491134369437
PKAWFERY	8	Unmodified	_PKAWFERY_					0	0	0			REV__ENST00000470543.1_1_3:42826765-42845976:-|nuORF	REV__ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7825927734375	2	548.782359	1095.55016	0.27179	0.00014915	0.89208	0.00048956	1.1639	0.00063871	548.782683292092	21.151	0.26218	21.151	21.045	21.307	0					12	5	3	0	0	0	0.44433	1	6954	6954		65.803	2.4969	1	1460800	+		29412	16835	20008	20080	29801	29801					0.006211800257005962
PKCDGQVL	8	Unmodified	_PKCDGQVL_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2;ENST00000473082.5_1_2:242312627-242344774:+|nuORF	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2200927734375	2	430.220746	858.426938	-0.24553	-0.00010563	-0.47469	-0.00020422	-0.72023	-0.00030986	430.2205470944979	33.334	0.2123	33.334	33.219	33.431	0					11	8	2	0	0	0	0.65148	1	10816	10816		40.778	1.7567	1	111740			29413	980	20009	20081	29802	29802					-0.007938194170833412
PKCDGQVL	8	Unmodified	_PKCDGQVL_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2;ENST00000473082.5_1_2:242312627-242344774:+|nuORF	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2204284667969	2	430.220746	858.426938	-0.8751	-0.00037648	0.73829	0.00031763	-0.13681	-5.8859E-05	430.2209781737131	33.397	0.25554	33.397	33.288	33.544	0					14	10	2	0	0	0	0.58597	1	11190	11190		51.335	3.4199	1	78809			29414	980	20009	20081	29803	29803					-0.007938194170833412
PKCDGQVL	8	Unmodified	_PKCDGQVL_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2;ENST00000473082.5_1_2:242312627-242344774:+|nuORF	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2206115722656	2	430.220746	858.426938	0.96524	0.00041527	-1.3789	-0.00059325	-0.4137	-0.00017798	430.22019158929595	33.595	0.29047	33.595	33.479	33.77	0					16	7	3	0	0	0	0.3961	1	12870	12870		71.296	5.4925	1	493640			29415	980	20009	20081	29804	29804					-0.007938194170833412
PKCDGQVL	8	Unmodified	_PKCDGQVL_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2;ENST00000473082.5_1_2:242312627-242344774:+|nuORF	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.22039794921875	2	430.220746	858.426938	-2.8452	-0.0012241	2.2994	0.00098926	-0.54576	-0.0002348	430.22160389850137	33.362	0.20863	33.362	33.242	33.451	0					16	6	3	0	0	0	0.59773	1	11697	11697		49.442	3.4896	1	123130			29416	980	20009	20081	29805	29805					-0.007938194170833412
PKEGMHIKQ	9	Unmodified	_PKEGMHIKQ_					0	0	0			REV__ZNF184|p.T357M|1|0.14|ENSG00000096654|chr6:27452489-27452489|G/A|missense_variant	REV__ZNF184|p.T357M|1|0.14|ENSG00000096654|chr6:27452489-27452489|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2289428710938	2	534.286951	1066.55935	0.53827	0.00028759	-1.728	-0.00092324	-1.1897	-0.00063565	534.2848754171702	11.643	0.089552	11.643	11.603	11.693	0					8	2	4	0	0	0	0.59802	1	2200	2200		21.96	1.013	1	109630	+		29417	14506	20010	20082	29806	29806					0.028732053197245477
PKFCFPHSK	9	Carbamidomethyl (C)	_PKFC(Carbamidomethyl (C))FPHSK_	PKFC(1)FPHSK		PKFC(50)FPHSK		0	1	0		DENND2C|p.D544H|1|0.27|ENSG00000175984|chr1:114604959-114604959|C/G|missense_variant	DENND2C|p.D544H|1|0.27|ENSG00000175984|chr1:114604959-114604959|C/G|missense_variant	DENND2C|p.D544H|1|0.27|ENSG00000175984|chr1:114604959-114604959|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.19586181640625	3	383.195421	1146.56443	0.60296	0.00023105	0.49428	0.00018941	1.0972	0.00042046	383.19565780092165	12.732	0.49865	12.732	12.612	13.111	0					17	11	4	0	0	0	0.30841	1	2772	2772		49.536	49.536	1	1165400			29418	769	20011	20083	29807	29807	26				-0.002984908176586032
PKGAAILK	8	Unmodified	_PKGAAILK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	399.2656555175781	2	399.265813	796.517074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.981	1	12.981	12.481	13.481	0								0	0	0	1.7419	1	2623	2623		47.916	10.887	1				29419	11531	20012	20084	29808	29808					0.11067597973658394
PKGAAILK	8	Unmodified	_PKGAAILK_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.26556396484375	2	399.265813	796.517074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.936	1	12.936	12.436	13.436	0								0	0	0	1.7419	1	2555	2555		57.811	7.7867	1				29420	11531	20012	20084	29809	29809					0.11067597973658394
PKGCLRLK	8	Unmodified	_PKGCLRLK_					0	0	0			REV__ENST00000587942.1_1_18:59713091-59751818:-|nuORF	REV__ENST00000587942.1_1_18:59713091-59751818:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7865905761719	2	457.783847	913.553142	4.318	0.0019767	2.4749	0.001133	6.7928	0.0031096	457.7847942341994	28.474	0.15434	28.474	28.384	28.538	0					9	5	2	0	0	0	0.77246	1	9167	9167		24.203	4.8428	1	88287	+		29421	17344	20013	20085	29810	29810					0.09290731878866154
PKGTVQCQLE	10	Unmodified	_PKGTVQCQLE_					0	0	0			REV__ENST00000557238.5_1_14:47341050-47530490:-|nuORF	REV__ENST00000557238.5_1_14:47341050-47530490:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7807006835938	2	551.781699	1101.54884	0.58886	0.00032492	-2.7514	-0.0015182	-2.1625	-0.0011932	551.7802194349907	31.368	0.21004	31.368	31.28	31.49	0					9	5	2	0	0	0	0.36476	1	11421	11421		60.118	1.8883	1	283330	+		29422	15053	20014	20086	29811	29811					0.0021317787463885907
PKGVVAVL	8	Unmodified	_PKGVVAVL_					0	0	0		GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4;GRIK4|p.P123Qfs*15|1|0.1|ENSG00000149403|chr11:120819774-120819774|C/-|frameshift_variant	GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.76104736328125	2	391.760364	781.506175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.17	1	25.17	24.67	25.67	0								0	0	0	1.7419	1	7795	7795		28.254	6.5519	1				29423	4880	20015	20087	29812	29812					0.10668195599373576
PKIQKDLK	8	Unmodified	_PKIQKDLK_					0	0	0		nc|ENSG00000127952|Q9Y6J8-4|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-4|STYXL1	nc|ENSG00000127952|Q9Y6J8-4|STYXL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.3082275390625	2	485.30821	968.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.959	1	12.959	12.459	13.459	0								0	0	0	1.7419	1	2563	2563		8.2313	0	1				29424	3523	20016	20088	29813	29813					0.11630923719610564
PKIWVLSH	8	Unmodified	_PKIWVLSH_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2876892089844	2	490.28982	978.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.619	1	23.619	23.119	24.119	0								0	0	0	1.7419	1	7845	7845		31.955	4.0726	1				29425	7724	20017	20089	29814	29814					0.07494671893698523
PKKAPAAS	8	Unmodified	_PKKAPAAS_					0	0	0			REV__nc|ENSG00000137221|Q5JTD0-2|TJAP1	REV__nc|ENSG00000137221|Q5JTD0-2|TJAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	385.23175048828125	2	385.231971	768.449388	-0.012527	-4.8258E-06	0.78434	0.00030215	0.77182	0.00029733	385.2318425512295	31.695	0.14696	31.695	31.629	31.776	0					17	7	3	0	0	0	0.78999	1	10200	10200		13.775	0	1	77792	+		29426	14911	20018	20090	29815	29815					0.055901480428474315
PKLQIITK	8	Unmodified	_PKLQIITK_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;REV__nc|ENSG00000151914|Q03001-3|DST	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.8131103515625	2	470.813128	939.611703	-0.85258	-0.00040141	-0.024838	-1.1694E-05	-0.87742	-0.0004131	470.81323331520707	27.238	0.20765	27.238	27.12	27.327	0					12	7	2	0	0	0	0.70055	1	8644	8644		33.516	0	1	92495	+		29427	12745;21064	20019	20091	29816	29816					0.13948111724971568
PKMLKLKDGGK	11	Unmodified	_PKMLKLKDGGK_					0	0	0		PHF2|p.T520M|1|0.21|ENSG00000197724|chr9:93660421-93660421|C/T|missense_variant	PHF2|p.T520M|1|0.21|ENSG00000197724|chr9:93660421-93660421|C/T|missense_variant	PHF2|p.T520M|1|0.21|ENSG00000197724|chr9:93660421-93660421|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.5798645019531	3	405.581164	1213.72166	-2.2781	-0.00092396	-0.58168	-0.00023592	-2.8598	-0.0011599	405.5807841322152	19.957	0.14961	19.957	19.86	20.01	0					7	3	3	0	0	0	0.60656	1	5534	5534		53.597	53.597	1	242500			29428	11926	20020	20092	29817	29817					0.12335169001835311
PKNPRGRY	8	Unmodified	_PKNPRGRY_					0	0	0			REV__ENST00000398621.3_1_10:81652047-81652404:-|nuORF	REV__ENST00000398621.3_1_10:81652047-81652404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.27911376953125	2	494.277775	986.540997	2.8	0.001384	-1.1185	-0.00055283	1.6815	0.00083113	494.2775666602705	35.89	1.4659	35.89	34.897	36.362	0					59	29	3	0	0	0	0.77246	1	13845	13845		24.203	0	1	3925000	+		29429	18925	20021	20093	29818	29818					0.04718831460036199
PKNYINCNTF	10	Unmodified	_PKNYINCNTF_					0	0	0			REV__BRD3|p.Y113N|1|0.39|ENSG00000169925|chr9:134052320-134052320|A/T|missense_variant	REV__BRD3|p.Y113N|1|0.39|ENSG00000169925|chr9:134052320-134052320|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	607.2843017578125	2	607.287148	1212.55974	0.15361	9.3285E-05	-2.7512	-0.0016708	-2.5976	-0.0015775	607.2852009233072	31.286	0.095234	31.286	31.221	31.316	0					9	4	3	0	0	0	0.67464	1	10038	10038		19.997	7.7901	1	44974	+		29430	12295	20022	20094	29819	29819					-0.03803419751079673
PKPFESHW	8	Unmodified	_PKPFESHW_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2539672851562	2	514.253434	1026.49232	-0.0008895	-4.5743E-07	0.77892	0.00040056	0.77803	0.00040011	514.2538454700501	14.695	0.084331	14.695	14.661	14.745	0					5	3	2	0	0	0	0.79426	1	3230	3230		16.473	1.6083	1	134530	+		29431	14981	20023	20095	29820	29820					-0.019870818997105744
PKPKFVVAN	9	Unmodified	_PKPKFVVAN_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;FGD6|p.S531Vfs*6|1|0.33|ENSG00000180263|chr12:95209693-95209693|T/-|frameshift_variant;FGD6|p.M414Wfs*11|1|0.26|ENSG00000180263|chr12:95210044-95210044|T/-|frameshift_variant;FGD6|p.K498Nfs*39|1|0.4|ENSG00000180263|chr12:95209790-95209790|T/-|frameshift_variant	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.3047180175781	2	500.302927	998.591301	2.921	0.0014614	0.048139	2.4084E-05	2.9692	0.0014855	500.3030999871338	40.29	0.3731	40.29	40.205	40.578	0					23	8	4	0	0	0	0.2873	1	15973	15973		51.335	51.335	1	1500500			29432	6797	20024	20096	29821	29821					0.09194941065175044
PKPKGIKKS	9	Unmodified	_PKPKGIKKS_					0	0	0		ENST00000379310.7_2_13:42141480-42141777:-|nuORF	ENST00000379310.7_2_13:42141480-42141777:-|nuORF	ENST00000379310.7_2_13:42141480-42141777:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	328.2186584472656	3	328.218443	981.633501	-0.66768	-0.00021914	0.921	0.00030229	0.25332	8.3145E-05	328.21882345564063	11.357	0.058363	11.357	11.317	11.376	0					7	3	3	0	0	0	0.61124	1	2181	2181		12.207	0	1	92855			29433	9078	20025	20097	29822	29822					0.1419491647357063
PKPKKAKDA	9	Unmodified	_PKPKKAKDA_					0	0	0		ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.2061462402344	3	328.206315	981.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.355	1	13.355	12.855	13.855	0								0	0	0	0.37821	1	3022	3022		12.812	0	1				29434	2796	20026	20098	29823	29823					0.10558039576835654
PKQNDRQE	8	Unmodified	_PKQNDRQE_					0	0	0		ENST00000440665.5_1_1:231663116-231663876:-|nuORF	ENST00000440665.5_1_1:231663116-231663876:-|nuORF	ENST00000440665.5_1_1:231663116-231663876:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7496643066406	2	507.751787	1013.48902	-0.61938	-0.00031449	-2.7124	-0.0013772	-3.3318	-0.0016917	507.75035296833113	19.608	0.20402	19.608	19.484	19.688	0					10	6	2	0	0	0	0.58597	1	5354	5354		51.335	7.2187	1	69193			29435	9571	20027	20099	29824	29824					-0.017183767443839315
PKRRQVEQ	8	Unmodified	_PKRRQVEQ_					0	0	0		ENSG00000255378|ENST00000528972|PRR23D2;ENSG00000255251|ENST00000533250|PRR23D1	ENSG00000255378|ENST00000528972|PRR23D2	ENSG00000255378|ENST00000528972|PRR23D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7996215820312	2	520.801614	1039.58868	1.6234	0.00084546	-3.8589	-0.0020097	-2.2355	-0.0011643	520.799127532362	11.926	0.13852	11.926	11.889	12.028	0					5	3	2	0	0	0	0.78122	1	2426	2426		8.2313	1.0379	1	297500			29436	8016	20028	20100	29825	29825					0.07046485660225699
PKSFKPKAS	9	Unmodified	_PKSFKPKAS_					0	0	0			REV__ENSG00000153292|ENST00000371253|ADGRF1	REV__ENSG00000153292|ENST00000371253|ADGRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.531005859375	3	330.530798	988.570566	0.54483	0.00018008	-0.017658	-5.8366E-06	0.52717	0.00017425	330.53068165274993	18.81	0.18938	18.81	18.677	18.867	0					5	4	2	0	0	0	0.56424	1	5849	5849		26.063	0	1	1216700	+		29437	15537	20029	20101	29826	29826					0.07582350685515848
PKSLTTSLHNK	11	Unmodified	_PKSLTTSLHNK_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.2344970703125	3	409.234822	1224.68264	0.052735	2.1581E-05	-0.66901	-0.00027378	-0.61627	-0.0002522	409.23458284385947	30.567	0.33469	30.567	30.464	30.798	0					14	7	3	0	0	0	0.39337	1	11428	11428		52.167	4.9395	1	947860			29438	4179	20030	20102	29827	29827					0.07928159971856985
PKSNYLQQ	8	Unmodified	_PKSNYLQQ_					0	0	0		tr|U7T4T3|U7T4T3_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00543PE=4SV=1	tr|U7T4T3|U7T4T3_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00543PE=4SV=1	tr|U7T4T3|U7T4T3_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00543PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2575988769531	2	489.256174	976.497795	2.6237	0.0012837	0.0023321	1.141E-06	2.626	0.0012848	489.2562599431287	16.965	0.26491	16.965	16.859	17.124	0					15	5	4	0	0	0	0.32815	1	4817	4817		79.451	2.6769	1	4494400			29439	22993	20031	20103	29828	29828					0.00860596892096055
PKSSNPPK	8	Unmodified	_PKSSNPPK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.73992919921875	2	427.74016	853.465767	-0.65057	-0.00027827	0.033477	1.4319E-05	-0.61709	-0.00026395	427.7402052412762	12.409	0.36346	12.409	12.175	12.538	0					29	12	3	0	0	0	0.42778	1	2555	2555		67.494	17.469	1	488970			29440	3069	20032	20104	29829	29829					0.03317229208948902
PKTDVKSQ	8	Unmodified	_PKTDVKSQ_					0	0	0			REV__nc|ENSG00000087303|Q14112-2|NID2	REV__nc|ENSG00000087303|Q14112-2|NID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7508544921875	2	451.750724	901.486896	-1.1921	-0.00053854	1.373	0.00062024	0.18084	8.1695E-05	451.75129636223363	20.112	0.10367	20.112	20.058	20.162	0					5	3	2	0	0	0	0.5535	1	5564	5564		54.776	1.8396	1	50905	+		29441	13383	20033	20105	29830	29830					0.032211945178119095
PKTSPGSKPL	10	Unmodified	_PKTSPGSKPL_					0	0	0			REV__ENST00000468415.6_1_3:59035346-59035502:-|nuORF	REV__ENST00000468415.6_1_3:59035346-59035502:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2975158691406	2	506.295299	1010.57605	-0.041848	-2.1188E-05	3.3816	0.0017121	3.3397	0.0016909	506.2969646210315	46.921	0.15586	46.921	46.816	46.972	0					12	9	2	0	0	0	0.58189	1	17259	17259		36.447	1.2947	1	50353	+		29442	19442	20034	20106	29831	29831					0.0711802947733986
PKVDVHVLT	9	Unmodified	_PKVDVHVLT_					0	0	0			REV__CLSTN2|p.Q250H|1|0.33|ENSG00000158258|chr3:140421237-140421237|G/T|missense_variant	REV__CLSTN2|p.Q250H|1|0.33|ENSG00000158258|chr3:140421237-140421237|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.176	1	32.176	31.676	32.676	0								0	0	0	0.36266	1	10722	10722		16.717	0	1		+		29443	12517	20035	20107	29832	29832					0.0781033333993264
PKVGHEMI	8	Unmodified	_PKVGHEMI_					0	0	0			REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7442932128906	2	455.744388	909.474223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.586	1	23.586	23.086	24.086	0								0	0	0	1.7419	1	8017	8017		50.025	4.0726	1		+		29444	14112	20036	20108	29833	29833					0.01586459853933775
PKYVPVDK	8	Unmodified	_PKYVPVDK_					0	0	0			REV__ENSG00000016391|ENST00000315251|CHDH	REV__ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2725524902344	2	473.273835	944.533118	-2.518	-0.0011917	-0.98649	-0.00046688	-3.5045	-0.0016586	473.2732798999336	15.689	0.16228	15.689	15.61	15.772	0					15	6	3	0	0	0	0.61938	1	3560	3560		45.952	1.8352	1	206910	+		29445	12924	20037	20109	29834	29834					0.05863259419891165
PLADDVTP	8	Unmodified	_PLADDVTP_					0	0	0		ENSG00000263761|ENST00000581492|GDF2	ENSG00000263761|ENST00000581492|GDF2	ENSG00000263761|ENST00000581492|GDF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2107849121094	2	414.210901	826.407249	0.58979	0.0002443	-0.93851	-0.00038874	-0.34871	-0.00014444	414.2104566823469	31.318	0.18254	31.318	31.227	31.41	0					11	7	2	0	0	0	0.68754	1	10064	10064		35.201	0	1	109340			29446	8062	20038	20110	29835	29835					-0.01289872156189631
PLAGDQHW	8	Unmodified	_PLAGDQHW_					0	0	0			REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant	REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2221374511719	2	462.222134	922.429715	0.11169	5.1625E-05	-0.39129	-0.00018086	-0.2796	-0.00012924	462.22193398926146	26.594	0.16363	26.594	26.531	26.695	0					7	5	2	0	0	0	0.59773	1	8100	8100		49.442	12.282	1	123100	+		29447	15384	20039	20111	29836	29836					-0.03460227967912033
PLAGDQHW	8	Unmodified	_PLAGDQHW_					0	0	0			REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant	REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2219543457031	2	462.222134	922.429715	-0.79436	-0.00036717	0.85223	0.00039392	0.057862	2.6745E-05	462.2224552585066	26.613	0.19462	26.613	26.519	26.713	0					14	7	3	0	0	0	0.52345	1	8392	8392		57.811	6.4758	1	119120	+		29448	15384	20039	20111	29837	29837					-0.03460227967912033
PLAGHLAL	8	Unmodified	_PLAGHLAL_					0	0	0		ENST00000466998.1_1_1:32042169-32043067:+|nuORF;ENST00000481165.5_1_1:32042638-32048843:+|nuORF;nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1	ENST00000466998.1_1_1:32042169-32043067:+|nuORF	ENST00000466998.1_1_1:32042169-32043067:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.2423095703125	2	396.242338	790.470124	0.60142	0.00023831	-0.60158	-0.00023837	-0.00016063	-6.365E-08	396.24209192344676	25.54	0.56658	25.54	25.188	25.755	0					31	11	4	0	0	0	0.63381	1	9044	9044		43.626	10.133	1	2224400			29449	4517	20040	20112	29838	29838					0.06650738422501945
PLALAHLA	8	Unmodified	_PLALAHLA_					0	0	0			REV__ENST00000477413.1_1_1:224544770-224545154:+|nuORF	REV__ENST00000477413.1_1_1:224544770-224545154:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.2500915527344	2	403.250163	804.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.284	1	49.284	48.784	49.784	0								0	0	0	1.7419	1	19502	19502		24.504	0	1		+		29450	19550	20041	20113	29839	29839					0.07571024939556992
PLALQYPLLE	10	Unmodified	_PLALQYPLLE_					0	0	0		ELK4|p.S359Ffs*37|2|0.3|ENSG00000158711|chr1:205619970-205619971|-/A|frameshift_variant	ELK4|p.S359Ffs*37|2|0.3|ENSG00000158711|chr1:205619970-205619971|-/A|frameshift_variant	ELK4|p.S359Ffs*37|2|0.3|ENSG00000158711|chr1:205619970-205619971|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.8331298828125	2	578.834257	1155.65396	-0.052752	-3.0535E-05	-2.5219	-0.0014598	-2.5746	-0.0014903	578.8328506347859	39.787	0.16338	39.787	39.658	39.821	0					14	7	3	0	0	0	0.7005	1	15132	15132		21.96	1.9631	1	119290			29451	904	20042	20114	29840	29840					0.08236042342696237
PLAPEEGSAV	10	Unmodified	_PLAPEEGSAV_					0	0	0			REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.24755859375	2	485.248015	968.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.842	1	27.842	27.342	28.342	0								0	0	0	0.37816	1	8632	8632		37.159	4.3467	1		+		29452	14570	20043	20115	29841	29841					-0.004025290646609392
PLAPQDFEE	9	Unmodified	_PLAPQDFEE_					0	0	0		LRRN4CL|p.F108Lfs*50|1|0.21|ENSG00000177363|chr11:62688187-62688188|-/G|frameshift_variant;ENSG00000177363|ENST00000317449|LRRN4CL	LRRN4CL|p.F108Lfs*50|1|0.21|ENSG00000177363|chr11:62688187-62688188|-/G|frameshift_variant	LRRN4CL|p.F108Lfs*50|1|0.21|ENSG00000177363|chr11:62688187-62688188|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2459716796875	2	523.245472	1044.47639	1.6972	0.00088807	-0.81106	-0.00042439	0.88618	0.00046369	523.2451319719733	32.751	0.16711	32.751	32.709	32.876	0					6	4	2	0	0	0	0.41113	1	12069	12069		40.778	5.1599	1	118820			29453	6660	20044	20116	29842	29842					-0.04406832927270443
PLAQKPAL	8	Unmodified	_PLAQKPAL_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	419.26336669921875	2	419.263271	836.511988	-1.3223	-0.00055439	1.0945	0.00045888	-0.22779	-9.5502E-05	419.26378530050914	32.613	0.091217	32.613	32.547	32.639	0					6	4	2	0	0	0	0.78999	1	10896	10896		13.775	0	1	38347			29454	2573	20045	20117	29843	29843					0.08719294111040199
PLARIKKIM	9	Unmodified	_PLARIKKIM_					0	0	0		ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000437925.1_1_9:89699796-89699949:-|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.2359619140625	3	357.235328	1068.68416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.131	1	47.131	46.631	47.631	0								0	0	0	0.40224	1	18831	18831		10.265	0	1				29455	1387	20046	20118	29844	29844					0.15256122526898253
PLARSRWF	8	Unmodified	_PLARSRWF_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7889404296875	2	516.790518	1031.56648	-1.4927	-0.00077142	-0.039701	-2.0517E-05	-1.5324	-0.00079194	516.7903783426647	31.294	0.18506	31.294	31.157	31.342	0					8	5	2	0	0	0	0.59773	1	10736	10736		38.806	0	1	78187	+		29456	19191	20047	20119	29845	29845					0.051963059824629454
PLATSPAPL	9	Unmodified	_PLATSPAPL_					0	0	0			REV__ENST00000454665.6_1_6:27222493-27222541:+|nuORF	REV__ENST00000454665.6_1_6:27222493-27222541:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.752197265625	2	433.752736	865.490919	-0.78347	-0.00033983	0.6201	0.00026897	-0.16337	-7.0864E-05	433.7530037317718	39.598	0.57048	39.598	39.491	40.062	0					46	32	2	0	0	0	0.32741	2	13407	13288;13407		47.916	3.7988	1	394420	+		29457	19338	20048	20120	29846;29847	29847					0.05279284011510299
PLAVSLAGG	9	Unmodified	_PLAVSLAGG_					0	0	0			REV__ENSG00000130829|ENST00000342782|DUSP9	REV__ENSG00000130829|ENST00000342782|DUSP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.7315673828125	2	392.731803	783.449054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.307	1	27.307	26.807	27.807	0								0	0	0	0.25856	1	9878	9878		42.474	8.9589	1		+		29458	14601	20049	20121	29848	29848					0.0486672832299746
PLAVSSAT	8	Unmodified	_PLAVSSAT_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099609375	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.016	1	49.016	48.516	49.516	0								0	0	0	1.7419	1	19434	19434		26.796	0	1				29459	4655	20050	20122	29849	29849					0.019344490519983992
PLAVTASS	8	Unmodified	_PLAVTASS_					0	0	0			REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	REV__HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.20977783203125	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.428	1	49.428	48.928	49.928	0								0	0	0	1.7419	1	18581	18581		28.254	0	1		+		29460	14482	20051	20123	29850	29850					0.01934449052009768
PLCLLLLLT	9	Carbamidomethyl (C)	_PLC(Carbamidomethyl (C))LLLLLT_	PLC(1)LLLLLT		PLC(41)LLLLLT		0	1	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.55694580078125	3	352.555956	1054.64604	3.6165	0.001275	-0.47124	-0.00016614	3.1453	0.0011089	352.5557567574165	18.074	0.11586	18.074	17.998	18.114	0					7	3	3	0	0	0	0.41113	1	4656	4656		40.778	6.6056	1	268710			29461	11836	20052	20124	29851	29851	474				0.12090191821562257
PLDADENKDD	10	Unmodified	_PLDADENKDD_					0	0	0			REV__PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	REV__PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.5775756835938	2	566.243657	1130.47276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.654	1	21.654	21.154	22.154	0								0	0	0	0.40063	1	6914	6914		30.318	3.6248	1		+		29462	13140	20053	20125	29852	29852					-0.08725547491803809
PLDDPSPPVR	10	Unmodified	_PLDDPSPPVR_					0	0	0			REV__nc|ENSG00000142765|Q8IYJ3-2|SYTL1	REV__nc|ENSG00000142765|Q8IYJ3-2|SYTL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7885131835938	2	546.787838	1091.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.405	1	30.405	29.905	30.905	0								0	0	0	0.39665	1	11361	11361		31.53	1.2121	1		+		29463	21047	20054	20126	29853	29853					0.01900537609321873
PLDHLFSEPG	10	Unmodified	_PLDHLFSEPG_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.7777099609375	2	556.274564	1110.53457	0.56937	0.00031672	0.0025528	1.42E-06	0.57192	0.00031815	556.2744956689437	44.972	0.39988	44.972	44.868	45.268	0					65	24	4	0	0	0	0.65051	1	16775	16775		16.473	0	1	1213000	+		29464	17387	20055	20127	29854	29854					-0.016271512820139833
PLEFKKIN	8	Unmodified	_PLEFKKIN_					0	0	0		ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.79443359375	2	494.794935	987.575317	0.75128	0.00037173	-0.95161	-0.00047085	-0.20033	-9.912E-05	494.7943972082111	41.769	0.1091	41.769	41.698	41.807	0					8	5	2	0	0	0	0.59773	1	15864	15864		38.806	3.6054	1	67891			29465	23150	20056	20128	29855	29855					0.08103234828274708
PLEFLCLLG	9	Unmodified	_PLEFLCLLG_					0	0	0		ENST00000562866.1_1_16:89783858-89784437:+|nuORF	ENST00000562866.1_1_16:89783858-89784437:+|nuORF	ENST00000562866.1_1_16:89783858-89784437:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7821044921875	2	502.777896	1003.54124	0.54563	0.00027433	4.3466	0.0021854	4.8922	0.0024597	502.7812676783992	32.548	0.1573	32.548	32.473	32.63	0					15	7	3	0	0	0	0.41354	1	10515	10515		40.573	1.3198	1	119530			29466	10727	20057	20129	29856	29856					0.039610703450193796
PLELWCHF	8	Unmodified	_PLELWCHF_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7528686523438	2	522.752213	1043.48987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.392	1	33.392	32.892	33.892	0								0	0	0	1.7419	1	12777	12777		29.842	5.6388	1		+		29467	17425	20058	20130	29857	29857					-0.03013253629023893
PLENPFKK	8	Unmodified	_PLENPFKK_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.8538818359375	3	324.855282	971.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.22	1	14.22	13.72	14.72	0								0	0	0	1.7419	1	3640	3640		29.15	0	1				29468	6806	20059	20131	29858	29858					0.057106617941940385
PLERFLLY	8	Unmodified	_PLERFLLY_					0	0	0		ASB11|p.P313T|1|0.19|ENSG00000165192|chrX:15283540-15283540|G/T|missense_variant;nc|ENSG00000165192|Q8WXH4-3|ASB11;nc|ENSG00000165192|Q8WXH4-2|ASB11;ENSG00000165192|ENST00000480796|ASB11	ASB11|p.P313T|1|0.19|ENSG00000165192|chrX:15283540-15283540|G/T|missense_variant	ASB11|p.P313T|1|0.19|ENSG00000165192|chrX:15283540-15283540|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.8060302734375	2	525.80276	1049.59097	5.2954	0.0027843	-0.81223	-0.00042707	4.4832	0.0023573	525.8023565647892	26.19	0.36412	26.19	26.063	26.427	0					29	11	4	0	0	0	0.55361	1	8169	8169		54.765	2.4655	1	595060			29469	236	20060	20132	29859	29859					0.06815521345356501
PLERGAGPHQ	10	Unmodified	_PLERGAGPHQ_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.5213928222656	3	354.521074	1060.54139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.324	1	16.324	15.824	16.824	0								0	0	0	0.40862	1	3846	3846		20.03	0	1		+		29470	21018	20061	20133	29860	29860					0.013542063892373335
PLESTGAVVY	10	Unmodified	_PLESTGAVVY_					0	0	0		ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2703247070312	2	518.27149	1034.52843	0.25055	0.00012985	-0.47143	-0.00024433	-0.22088	-0.00011448	518.2708361368369	44.55	0.28733	44.55	44.319	44.606	0					13	11	2	0	0	0	0.42631	1	17852	17852		53.351	2.016	1	38193			29471	1164	20062	20134	29861	29861					0.012543304864948368
PLETIQKK	8	Unmodified	_PLETIQKK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.79205322265625	2	478.792392	955.570232	-0.2558	-0.00012247	-0.34119	-0.00016336	-0.59699	-0.00028583	478.792044497776	24.155	0.40228	24.155	23.863	24.265	0					21	9	3	0	0	0	0.39125	1	8092	8092		71.877	0	1	109960			29472	3093	20063	20135	29862	29862					0.09066930965661868
PLFDGIFHK	9	Unmodified	_PLFDGIFHK_					0	0	0			REV__ENSG00000105705|ENST00000247001|SUGP1	REV__ENSG00000105705|ENST00000247001|SUGP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.8014526367188	2	537.292559	1072.57057	-0.35681	-0.00019171	0.31329	0.00016833	-0.043519	-2.3383E-05	537.2927806354672	18.061	0.59886	18.061	17.792	18.391	0					58	19	5	0	0	0	0.53083	1	4576	4576		29.15	3.6994	1	3320200	+		29473	13793	20064	20136	29863	29863					0.0371835068551718
PLFFFFLLAL	10	Unmodified	_PLFFFFLLAL_					0	0	0			REV__ENST00000495676.5_1_1:154227274-154227361:+|nuORF	REV__ENST00000495676.5_1_1:154227274-154227361:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.9102783203125	3	409.910728	1226.71035	-0.62938	-0.00025799	-0.44361	-0.00018184	-1.073	-0.00043983	409.91058967490903	20.889	0.27946	20.889	20.731	21.01	0					11	6	4	0	0	0	0.62235	1	6582	6582		31.53	4.4825	1	507930	+		29474	19762	20065	20137	29864	29864					0.10606714970049325
PLFPTLAFF	9	Unmodified	_PLFPTLAFF_					0	0	0		ENST00000485587.1_1_22:37419962-37421138:+|nuORF	ENST00000485587.1_1_22:37419962-37421138:+|nuORF	ENST00000485587.1_1_22:37419962-37421138:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7366943359375	2	526.794404	1051.57425	0.59997	0.00031606	-1.6691	-0.00087927	-1.0691	-0.00056321	526.7935687662157	13.014	0.15893	13.014	12.96	13.119	0					12	7	3	0	0	0	0.61124	1	2511	2511		13.775	1.5685	1	788890			29475	10008	20066	20138	29865	29865					0.050530204593542294
PLGALQQGS	9	Unmodified	_PLGALQQGS_					0	0	0			REV__ENSG00000188282|ENST00000697321|RUFY4	REV__ENSG00000188282|ENST00000697321|RUFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.73785400390625	2	435.737617	869.460681	0.2231	9.7213E-05	-0.22372	-9.7485E-05	-0.00062439	-2.7207E-07	435.7376084653521	27.335	0.20003	27.335	27.211	27.411	0					11	8	2	0	0	0	0.22377	1	8393	8393		58.782	0	1	61605	+		29476	17163	20067	20139	29866	29866					0.02072925346340071
PLGALQQGS	9	Unmodified	_PLGALQQGS_					0	0	0			REV__ENSG00000188282|ENST00000697321|RUFY4	REV__ENSG00000188282|ENST00000697321|RUFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.7373962402344	2	435.737617	869.460681	0.6604	0.00028776	-0.76895	-0.00033506	-0.10854	-4.7297E-05	435.7371978099103	27.547	0.34547	27.547	27.46	27.805	0					18	8	3	0	0	0	0.062676	1	9647	9647		90.777	0.40684	1	667520	+		29477	17163	20067	20139	29867	29867					0.02072925346340071
PLGALQQGS	9	Unmodified	_PLGALQQGS_					0	0	0			REV__ENSG00000188282|ENST00000697321|RUFY4	REV__ENSG00000188282|ENST00000697321|RUFY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.73736572265625	2	435.737617	869.460681	-0.86405	-0.0003765	0.22609	9.8516E-05	-0.63796	-0.00027798	435.7376748050502	27.299	0.27737	27.299	27.223	27.501	0					19	10	2	0	0	0	0.12239	1	8677	8677		74.255	2.9593	1	365730	+		29478	17163	20067	20139	29868	29868					0.02072925346340071
PLGGPSPL	8	Unmodified	_PLGGPSPL_					0	0	0			REV__ENST00000473572.2_1_19:36501753-36502343:-|nuORF	REV__ENST00000473572.2_1_19:36501753-36502343:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.2120666503906	2	369.213246	736.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.216	1	42.216	41.716	42.716	0								0	0	0	1.7419	1	16835	16835		26.796	5.0938	1		+		29479	19391	20068	20140	29869	29869					0.03319056777240803
PLGHVLGV	8	Unmodified	_PLGHVLGV_					0	0	0			REV__UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant	REV__UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.2424621582031	2	396.242338	790.470124	-0.069079	-2.7372E-05	0.021354	8.4613E-06	-0.047725	-1.8911E-05	396.2424114847398	25.262	0.25184	25.262	25.11	25.362	0					11	7	2	0	0	0	0.70073	1	7606	7606		33.493	8.989	1	71167	+		29480	15371	20069	20141	29870	29870					0.06650738422524682
PLGHVLGV	8	Unmodified	_PLGHVLGV_					0	0	0			REV__UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant	REV__UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	396.2425842285156	2	396.242338	790.470124	-0.15498	-6.1408E-05	0.052543	2.082E-05	-0.10243	-4.0588E-05	396.2422852382238	25.348	0.3773	25.348	25.171	25.548	0					16	9	3	0	0	0	0.79462	1	8015	8015		16.705	0	1	299740	+		29481	15371	20069	20141	29871	29871					0.06650738422524682
PLGLAAYAR	9	Unmodified	_PLGLAAYAR_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2716979980469	2	466.271627	930.528701	-0.18098	-8.4386E-05	0.26501	0.00012357	0.084031	3.9181E-05	466.271829968542	35.655	0.29818	35.655	35.553	35.851	0					21	11	3	0	0	0	0.36711	1	12702	12702		44.531	3.7529	1	124170	+		29482	12636	20070	20142	29872	29872					0.060657949969822766
PLGPGGGG	8	Unmodified	_PLGPGGGG_					0	0	0			REV__NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant	REV__NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	306.16094970703125	2	306.161014	610.307475	-0.66748	-0.00020436	0.64352	0.00019702	-0.023956	-7.3345E-06	306.16112294064845	23.307	0.13547	23.307	23.211	23.346	0					6	4	2	0	0	0	0.78431	1	6983	6983		10.185	0	1	79778	+		29483	17592	20071	20143	29873	29873					-0.013266449794741675
PLHARAASVAK	11	Unmodified	_PLHARAASVAK_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.8345947265625	2	560.832914	1119.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.049	1	19.049	18.549	19.549	0								0	0	0	0.43372	1	5095	5095		9.1829	0	1		+		29484	17746	20072	20144	29874	29874					0.09623631728413784
PLHLAFEL	8	Unmodified	_PLHLAFEL_					0	0	0			REV__nc|ENSG00000134508|Q8TDN4-3|CABLES1	REV__nc|ENSG00000134508|Q8TDN4-3|CABLES1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.26678466796875	2	470.268553	938.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.968	1	27.968	27.468	28.468	0								0	0	0	1.7419	1	8968	8968		21.702	0.7554	1		+		29485	14748	20073	20145	29875	29875					0.050832767654810596
PLHLQELY	8	Unmodified	_PLHLQELY_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7769775390625	2	506.776742	1011.53893	1.27	0.00064359	-0.82269	-0.00041692	0.44727	0.00022667	506.7762202602524	36.47	0.21666	36.47	36.362	36.579	0					7	4	2	0	0	0	0.67394	1	14190	14190		37.159	1.5408	1	273610	+		29486	15859	20074	20146	29876	29876					0.03362357931553106
PLHLYSLFE	9	Unmodified	_PLHLYSLFE_					0	0	0			REV__N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant	REV__N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.7989501953125	2	559.797675	1117.5808	1.7963	0.0010056	-0.8621	-0.0004826	0.93419	0.00052296	559.797543844463	30.335	0.3794	30.335	30.245	30.624	0					27	9	5	0	0	0	0.33044	1	10972	10972		31.955	0	1	1371800	+		29487	15296	20075	20147	29877	29877					0.026709136201134243
PLHPHQGRL	9	Unmodified	_PLHPHQGRL_					0	0	0		nc|ENSG00000010030|Q9Y603-2|ETV7	nc|ENSG00000010030|Q9Y603-2|ETV7	nc|ENSG00000010030|Q9Y603-2|ETV7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.8001098632812	2	527.798875	1053.5832	0.1062	5.6051E-05	3.1238	0.0016487	3.23	0.0017048	528.301845743625	42.33	0.24509	42.33	42.259	42.504	0					18	13	2	0	0	0	0.30951	1	16036	16036		42.474	8.3019	1	101590			29488	11416	20076	20148	29878	29878					0.05854806868410378
PLHQSPVQ	8	Unmodified	_PLHQSPVQ_					0	0	0			REV__ENST00000517417.2_1_5:140890741-140891002:+|nuORF	REV__ENST00000517417.2_1_5:140890741-140891002:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2439880371094	2	453.245609	904.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.293	1	18.293	17.793	18.793	0								0	0	0	1.7419	1	4753	4753		15.642	0.77694	1		+		29489	19917	20077	20149	29879	29879					0.020606315832424116
PLIQSVTHL	9	Unmodified	_PLIQSVTHL_					0	0	0			REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5345153808594	3	336.53432	1006.58113	-0.67407	-0.00022685	0.50813	0.000171	-0.16593	-5.5843E-05	336.53444770613845	25.895	1.0959	25.895	25.373	26.469	0					52	32	2	0	0	0	0.61124	1	8131	8131		14.865	5.682	1	84546	+		29490	13817	20078	20150	29880	29880					0.07810333339955378
PLKNNKYEP	9	Unmodified	_PLKNNKYEP_					0	0	0			REV__CTSA|p.F173Pfs*39|1|0.09|ENSG00000064601|chr20:45892795-45892796|TT/-|frameshift_variant	REV__CTSA|p.F173Pfs*39|1|0.09|ENSG00000064601|chr20:45892795-45892796|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.2994384765625	2	551.798206	1101.58186	0.59404	0.00032779	0.091903	5.0712E-05	0.68594	0.0003785	551.7983395225585	39.109	0.31226	39.109	38.97	39.282	0					24	11	3	0	0	0	0.17854	1	14866	14866		64.207	11.271	1	467120	+		29491	12646	20079	20151	29881	29881					0.03513127989003806
PLKSIPVS	8	Unmodified	_PLKSIPVS_					0	0	0		MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17;MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.76446533203125	2	420.763104	839.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.583	1	25.583	25.083	26.083	0								0	0	0	1.7419	1	8761	8761		24.203	3.7209	1				29492	6191	20080	20152	29882	29882					0.08547874391172172
PLLAAGLH	8	Unmodified	_PLLAAGLH_					0	0	0		ENST00000426077.2_1_2:120980139-120980361:-|nuORF	ENST00000426077.2_1_2:120980139-120980361:-|nuORF	ENST00000426077.2_1_2:120980139-120980361:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.2422790527344	2	396.242338	790.470124	0.58385	0.00023134	-0.32276	-0.00012789	0.26109	0.00010345	396.2421684627079	25.267	0.19521	25.267	25.152	25.347	0					7	5	2	0	0	0	0.77013	1	7581	7581		24.504	0	1	80115			29493	9442	20081	20153	29883	29883					0.06650738422501945
PLLCKLHR	8	Unmodified	_PLLCKLHR_					0	0	0			REV__MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|9|3|sense	REV__MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|9|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.10858154296875	3	327.200507	978.579691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.078	1	50.078	49.578	50.578	0								0	0	0	1.7419	1	18070	18070		10.866	0	1		+		29494	20897	20082	20154	29884	29884					0.08954420770191973
PLLEQEHE	8	Unmodified	_PLLEQEHE_					0	0	0			REV__SLC36A4|p.N453Ifs*4|1|0.19|ENSG00000180773|chr11:93148694-93148694|T/-|frameshift_variant	REV__SLC36A4|p.N453Ifs*4|1|0.19|ENSG00000180773|chr11:93148694-93148694|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7457275390625	2	497.745639	993.476725	0.17947	8.9328E-05	-0.019942	-9.9259E-06	0.15952	7.9403E-05	497.74596368623423	25.376	0.29607	25.376	25.252	25.548	0					12	7	2	0	0	0	0.67394	1	8078	8078		37.159	0.13063	1	94067	+		29495	16819	20083	20155	29885	29885					-0.02027413207429163
PLLHRALH	8	Unmodified	_PLLHRALH_					0	0	0		nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB	nc|ENSG00000257365|P49356-2|FNTB	nc|ENSG00000257365|P49356-2|FNTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7924499511719	2	478.793061	955.571569	-0.45339	-0.00021708	-0.67331	-0.00032238	-1.1267	-0.00053946	478.7925440427041	24.107	0.31575	24.107	23.881	24.196	0					11	6	2	0	0	0	0.41446	1	8376	8376		69.093	8.6893	1	50985			29496	8033	20084	20156	29886	29886					0.09200609845083818
PLLHRLSPG	9	Unmodified	_PLLHRLSPG_					0	0	0			REV__ENST00000477680.5_1_7:4815294-4829561:+|nuORF	REV__ENST00000477680.5_1_7:4815294-4829561:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.534423828125	3	330.534543	988.581799	0.27623	9.1302E-05	0.22047	7.2873E-05	0.4967	0.00016418	330.5344071801812	21.542	0.13862	21.542	21.477	21.616	0					8	5	2	0	0	0	0.61124	1	5952	5952		19.104	0.77911	1	47821	+		29497	12177	20085	20157	29887	29887					0.08705172779650638
PLLLRSSL	8	Unmodified	_PLLLRSSL_					0	0	0			REV__ENST00000380345.6_1_5:77944382-77944556:-|nuORF	REV__ENST00000380345.6_1_5:77944382-77944556:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.78948974609375	2	449.789653	897.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.489	1	44.489	43.989	44.989	0								0	0	0	1.7419	1	17824	17824		38.806	0	1		+		29498	18770	20086	20158	29888	29888					0.11187252173851903
PLLNGLDYTV	10	Unmodified	_PLLNGLDYTV_					0	0	0		LHX4|p.A324T|3|0.26|ENSG00000121454|chr1:180274376-180274376|G/A|missense_variant;ENSG00000121454|ENST00000263726|LHX4	LHX4|p.A324T|3|0.26|ENSG00000121454|chr1:180274376-180274376|G/A|missense_variant	LHX4|p.A324T|3|0.26|ENSG00000121454|chr1:180274376-180274376|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8697509765625	3	368.869368	1103.58628	1.0631	0.00039215	0.0048212	1.7784E-06	1.0679	0.00039393	368.8693039749731	37.344	1.0519	37.344	36.801	37.853	0					58	32	3	0	0	0	0.63073	1	14607	14607		21.686	0	1	152100			29499	3224	20087	20159	29889	29889					0.03862592411906007
PLLPQREGP	9	Unmodified	_PLLPQREGP_					0	0	0			REV__ENSG00000110446|ENST00000227880|SLC15A3	REV__ENSG00000110446|ENST00000227880|SLC15A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.1940612792969	3	336.194186	1005.56073	0.51686	0.00017376	-0.77338	-0.00026001	-0.25652	-8.6241E-05	336.1941360203054	17.648	1.3462	17.648	17.415	18.762	0					88	32	5	0	0	0	0.47428	1	4992	4992		42.396	9.5837	1	664390	+		29500	13937	20088	20160	29890	29890					0.05817162680136789
PLLPSVLGPA	10	Unmodified	_PLLPSVLGPA_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2978820800781	2	482.29731	962.580068	0.56027	0.00027022	-0.8774	-0.00042317	-0.31713	-0.00015295	482.29694167500395	43.118	0.14798	43.118	43.027	43.175	0					11	7	2	0	0	0	0.4943	1	16284	16284		45.952	3.0877	1	52878			29501	5427	20089	20161	29891	29891					0.09728118971031563
PLLSTWNL	8	Unmodified	_PLLSTWNL_					0	0	0			REV__nc|ENSG00000144959|Q6PIU2-3|NCEH1	REV__nc|ENSG00000144959|Q6PIU2-3|NCEH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2679443359375	2	472.26601	942.517468	3.7587	0.0017751	-0.098247	-4.6399E-05	3.6604	0.0017287	472.26608312032164	32.535	0.28388	32.535	32.417	32.701	0					22	11	3	0	0	0	0.44433	1	10855	10855		65.803	2.4969	1	138190	+		29502	15252	20090	20162	29892	29892					0.04390972902831436
PLMFAFSAR	9	Unmodified	_PLMFAFSAR_					0	0	0			REV__SLC13A5|p.S497R|1|0.07|ENSG00000141485|chr17:6687613-6687613|A/C|missense_variant	REV__SLC13A5|p.S497R|1|0.07|ENSG00000141485|chr17:6687613-6687613|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7735595703125	2	520.273312	1038.53207	3.3727	0.0017547	3.2365	0.0016839	6.6092	0.0034386	520.2764393599032	45.378	0.22477	45.378	45.279	45.504	0					21	9	3	0	0	0	0.54267	1	18150	18150		27.882	2.3082	1	124090	+		29503	21522	20091	20163	29893	29893					0.014347217793329037
PLMWPALGK	9	Unmodified	_PLMWPALGK_					0	0	0			REV__ENST00000318782.8_1_16:3021955-3022234:+|nuORF	REV__ENST00000318782.8_1_16:3021955-3022234:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7882995605469	2	506.786056	1011.55756	0.29125	0.0001476	3.4904	0.0017689	3.7816	0.0019165	506.78778613627986	30.475	0.12931	30.475	30.403	30.533	0					5	3	2	0	0	0	0.41354	1	10396	10396		40.573	7.0796	1	75763	+		29504	18317	20092	20164	29894	29894					0.05224196301776374
PLNGPINILG	10	Unmodified	_PLNGPINILG_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;PFAS|p.D615Mfs*45|1|0.41|ENSG00000178921|chr17:8264259-8264259|G/-|frameshift_variant	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5340270996094	3	336.53432	1006.58113	-0.7028	-0.00023652	0.54473	0.00018332	-0.15807	-5.3196E-05	336.53468355038433	18.554	1.3845	18.554	18.457	19.842	0					108	44	6	0	0	0	0.73274	1	5349	5349		21.686	6.0439	1	70070000			29505	6737	20093	20165	29895	29895					0.07810333339944009
PLNTPGKLGL	10	Unmodified	_PLNTPGKLGL_					0	0	0		ENST00000493216.1_1_22:20937040-20937274:+|nuORF	ENST00000493216.1_1_22:20937040-20937274:+|nuORF	ENST00000493216.1_1_22:20937040-20937274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.28173828125	2	505.305667	1008.59678	1.2307	0.00062189	-1.484	-0.00074989	-0.25331	-0.000128	505.30484930925115	33.808	0.41958	33.808	33.633	34.053	0					16	9	3	0	0	0	0.6796	1	12844	12844		24.519	2.5593	1	903140			29506	10088	20094	20166	29896	29896					0.09282619856992369
PLPARPPA	8	Unmodified	_PLPARPPA_					0	0	0		ENST00000430145.3_1_19:49166463-49183997:+|nuORF	ENST00000430145.3_1_19:49166463-49183997:+|nuORF	ENST00000430145.3_1_19:49166463-49183997:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.74786376953125	2	409.747788	817.481023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.311	1	17.311	16.811	17.811	0								0	0	0	1.7419	1	4105	4105		15.636	0	1				29507	9484	20095	20167	29897	29897					0.0649814079679345
PLPELSGD	8	Unmodified	_PLPELSGD_					0	0	0			REV__tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	REV__tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.2107238769531	2	414.210901	826.407249	-1.4624	-0.00060573	0.70124	0.00029046	-0.76114	-0.00031527	414.2113401366254	31.35	0.25402	31.35	31.275	31.529	0					16	10	2	0	0	0	0.67475	1	10370	10370		37.028	0	1	164990	+		29508	21955	20096	20168	29898	29898					-0.012898721561782622
PLPGRTRA	8	Unmodified	_PLPGRTRA_					0	0	0			REV__ENST00000443148.5_1_3:9874920-9876502:+|nuORF	REV__ENST00000443148.5_1_3:9874920-9876502:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2618408203125	2	434.261594	866.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.939	1	13.939	13.439	14.439	0								0	0	0	1.7419	1	3287	3287		42.474	3.2216	1		+		29509	19261	20097	20169	29899	29899					0.0700404405702102
PLPKALRG	8	Unmodified	_PLPKALRG_					0	0	0		ENST00000382291.7_1_20:334405-334570:+|nuORF	ENST00000382291.7_1_20:334405-334570:+|nuORF	ENST00000382291.7_1_20:334405-334570:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.2768249511719	2	426.276712	850.538872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.69	1	28.69	28.19	29.19	0								0	0	0	1.7419	1	9556	9556		21.702	0	1				29510	9123	20098	20170	29900	29900					0.10762402722230036
PLPKLTPQN	9	Unmodified	_PLPKLTPQN_					0	0	0		nc|ENSG00000188895|Q68DK7-3|MSL1;nc|ENSG00000188895|Q68DK7-2|MSL1;ENSG00000188895|ENST00000398532|MSL1;ENST00000339569.9_1_17:38287776-38290619:+|nuORF	nc|ENSG00000188895|Q68DK7-3|MSL1	nc|ENSG00000188895|Q68DK7-3|MSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5340881347656	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.376	1	23.376	22.876	23.876	0								0	0	0	0.35507	1	7015	7015		18.262	0.79408	1				29511	7282	20099	20171	29901	29901					0.07810333339944009
PLPKWYII	8	Unmodified	_PLPKWYII_					0	0	0			REV__LIFR|p.N551H|1|0.06|ENSG00000113594|chr5:38499533-38499533|T/G|missense_variant	REV__LIFR|p.N551H|1|0.06|ENSG00000113594|chr5:38499533-38499533|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3096923828125	2	515.310221	1028.60589	1.1907	0.00061356	-1.1809	-0.00060851	0.0097969	5.0484E-06	515.3096418528366	40.276	0.35591	40.276	40.075	40.431	0					22	15	2	0	0	0	0.66372	1	15319	15319		28.254	0	1	113640	+		29512	14047	20100	20172	29902	29902					0.0927301321332834
PLPLMLLP	8	Unmodified	_PLPLMLLP_					0	0	0		ENSG00000203989|ENST00000371402|RHOXF2B;ENSG00000131721|ENST00000371388|RHOXF2	ENSG00000203989|ENST00000371402|RHOXF2B	ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.28173828125	2	447.280075	892.545597	2.5627	0.0011462	1.3391	0.00059897	3.9018	0.0017452	447.280603336009	42.578	0.1198	42.578	42.501	42.621	0					5	3	2	0	0	0	0.70073	1	17010	17010		33.493	0	1	53268			29513	3734	20101	20173	29903	29903					0.09502579558579782
PLPPGATARY	10	Unmodified	_PLPPGATARY_					0	0	0			REV__ENST00000368124.8_1_1:159170782-159171025:+|nuORF	REV__ENST00000368124.8_1_1:159170782-159171025:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7880859375	2	521.787641	1041.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.014	1	40.014	39.514	40.514	0								0	0	0	0.37816	1	15758	15758		37.159	0.13063	1		+		29514	18602	20102	20174	29904	29904					0.04161162680156849
PLPPHHHQ	8	Unmodified	_PLPPHHHQ_					0	0	0			REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF	REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.75244140625	2	481.751393	961.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.651	1	30.651	30.151	31.151	0								0	0	0	1.7419	1	11479	11479		37.028	3.1068	1		+		29515	19844	20103	20175	29905	29905					0.0059487339723318655
PLPPPFLNAGP	11	Unmodified	_PLPPPFLNAGP_					0	0	0			REV__ENSG00000196118|ENST00000543610|CFAP119	REV__ENSG00000196118|ENST00000543610|CFAP119	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.8766784667969	3	373.878087	1118.61243	-0.33864	-0.00012661	-3.1208	-0.0011668	-3.4594	-0.0012934	373.87729858458084	27.111	0.5235	27.111	26.952	27.476	0					18	10	4	0	0	0	0.65797	1	9678	9678		31.634	2.4642	1	578990	+		29516	17226	20104	20176	29906	29906					0.057869063740326965
PLPRLLLHG	9	Unmodified	_PLPRLLLHG_					0	0	0		ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3236083984375	2	508.324194	1014.63383	-0.10624	-5.4006E-05	-1.52	-0.00077263	-1.6262	-0.00082664	508.32341661222335	41.168	0.14072	41.168	41.074	41.214	0					5	3	2	0	0	0	0.50461	1	16347	16347		31.955	1.4512	1	77767			29517	8500	20105	20177	29907	29907					0.12710336193435978
PLPRSVAPRQ	10	Unmodified	_PLPRSVAPRQ_					0	0	0		ENST00000579096.1_1_17:73110716-73125130:+|nuORF;ENSG00000125449|ENST00000245543|ARMC7	ENST00000579096.1_1_17:73110716-73125130:+|nuORF	ENST00000579096.1_1_17:73110716-73125130:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.224365234375	3	374.224368	1119.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.176	1	19.176	18.676	19.676	0								0	0	0	0.3598	1	5878	5878		41.427	1.3684	1				29518	3414	20106	20178	29908	29908					0.09623631728413784
PLPTLKPAQP	10	Unmodified	_PLPTLKPAQP_					0	0	0			REV__ENST00000498539.1_1_7:100174858-100175272:-|nuORF	REV__ENST00000498539.1_1_7:100174858-100175272:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.3191528320312	2	531.321317	1060.62808	1.0458	0.00055565	-4.0887	-0.0021724	-3.0429	-0.0016168	531.3189394476811	53.22	0.21773	53.22	53.153	53.371	0					15	13	2	0	0	0	0.67098	1	15722	15722		25.574	2.5316	1	63998	+		29519	19796	20107	20179	29909	29909					0.10019192891104467
PLPYGVSAPGP	11	Unmodified	_PLPYGVSAPGP_					0	0	0		PLEKHH3|p.A280Rfs*7|1|0.2|ENSG00000068137|chr17:42672324-42672324|C/-|frameshift_variant;nc|ENSG00000068137|Q7Z736-4|PLEKHH3;ENST00000456950.6_1_17:40821512-40828020:-|nuORF;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;ENSG00000068137|ENST00000591022|PLEKHH3	PLEKHH3|p.A280Rfs*7|1|0.2|ENSG00000068137|chr17:42672324-42672324|C/-|frameshift_variant	PLEKHH3|p.A280Rfs*7|1|0.2|ENSG00000068137|chr17:42672324-42672324|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.190185546875	3	352.190442	1053.5495	0.50645	0.00017837	-1.165	-0.00041032	-0.65859	-0.00023195	352.1899298697734	21.801	0.11536	21.801	21.742	21.858	0					6	2	3	0	0	0	0.74809	1	7293	7293		14.694	0	1	467080			29520	1419	20108	20180	29910	29910					0.024863405860060084
PLQDIHIGQV	10	Unmodified	_PLQDIHIGQV_					0	0	0			REV__ENSG00000174842|ENST00000370360|GLMN	REV__ENSG00000174842|ENST00000370360|GLMN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.8768310546875	3	373.876746	1118.60841	0.81013	0.00030289	0.30946	0.0001157	1.1196	0.00041859	373.87702860832485	27.212	1.8217	27.212	26.71	28.532	0					61	37	4	0	0	0	0.61187	1	9824	9824		24.232	0	1	1628800	+		29521	16587	20109	20181	29911	29911					0.053848168803369845
PLQGAYLAL	9	Unmodified	_PLQGAYLAL_					0	0	0			REV__ENSG00000143851|ENST00000691036|PTPN7	REV__ENSG00000143851|ENST00000691036|PTPN7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2724304199219	2	473.273835	944.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.268	1	47.268	46.768	47.768	0								0	0	0	0.15865	1	18887	18887		57.811	5.5121	1		+		29522	15212	20110	20182	29912	29912					0.058632594198684274
PLQLRAPA	8	Unmodified	_PLQLRAPA_					0	0	0			REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF	REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.26611328125	2	433.266345	864.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.874	1	23.874	23.374	24.374	0								0	0	0	1.7419	1	7357	7357		28.254	0	1		+		29523	20583	20111	20183	29913	29913					0.08045812342550107
PLQREQHR	8	Unmodified	_PLQREQHR_					0	0	0		GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.29296875	2	532.291414	1062.56827	3.4086	0.0018143	-1.1639	-0.00061953	2.2447	0.0011948	532.291281829469	24.941	0.9518	24.941	24.496	25.448	0					65	19	5	0	0	0	0.58597	1	8653	8653		51.335	1.3109	1	6410600			29524	11174	20112	20184	29914	29914					0.03949315000409115
PLRPEEPLAP	10	Unmodified	_PLRPEEPLAP_					0	0	0			REV__ENST00000565561.1_1_16:84853723-84872578:+|nuORF	REV__ENST00000565561.1_1_16:84853723-84872578:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.5439758300781	3	373.544996	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.097	1	39.097	38.597	39.597	0								0	0	0	0.4201	1	15366	15366		22.58	0	1		+		29525	20335	20113	20185	29915	29915					0.05905701023084475
PLRPLADQHA	10	Unmodified	_PLRPLADQHA_					0	0	0			REV__ENST00000464290.5_1_9:131865327-131873452:-|nuORF	REV__ENST00000464290.5_1_9:131865327-131873452:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2097473144531	3	373.208607	1116.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.592	1	52.592	52.092	53.092	0								0	0	0	0.40002	1	20399	20399		21.686	1.689	1		+		29526	13469	20114	20186	29916	29916					0.050353524574120456
PLRPPPPPSR	10	Unmodified	_PLRPPPPPSR_					0	0	0		ENST00000219368.7_1_16:74773991-74808682:-|nuORF	ENST00000219368.7_1_16:74773991-74808682:-|nuORF	ENST00000219368.7_1_16:74773991-74808682:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.89019775390625	3	371.889097	1112.64546	3.2106	0.001194	-0.54229	-0.00020167	2.6683	0.00099231	371.8890282412195	17.355	0.60773	17.355	17.259	17.867	0					28	12	3	0	0	0	0.55603	1	5000	5000		36.318	6.1785	1	2538500			29527	8171	20115	20187	29917	29917					0.09364533216739801
PLRPSTRSC	9	Carbamidomethyl (C)	_PLRPSTRSC(Carbamidomethyl (C))_	PLRPSTRSC(1)		PLRPSTRSC(46)		0	1	0		nc|ENSG00000116691|Q5JXC2-2|MIIP	nc|ENSG00000116691|Q5JXC2-2|MIIP	nc|ENSG00000116691|Q5JXC2-2|MIIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2814331054688	2	537.279657	1072.54476	0.21402	0.00011499	2.8421	0.001527	3.0561	0.001642	537.2813746013438	12.536	0.2549	12.536	12.464	12.719	0					18	8	3	0	0	0	0.35045	1	2662	2662		45.952	10.334	1	701490			29528	11492	20116	20188	29918	29918	453				0.011391331715913111
PLSAWSPGKK	10	Unmodified	_PLSAWSPGKK_					0	0	0		nc|ENSG00000106648|Q7Z4T8-2|GALNTL5;GALNTL5|p.G206Afs*25|1|0.42|ENSG00000106648|chr7:151987238-151987239|GG/-|frameshift_variant;GALNTL5|p.W332Lfs*32|1|0.15|ENSG00000106648|chr7:152007907-152007908|-/T|frameshift_variant;ENSG00000106648|ENST00000392800|GALNTL5	nc|ENSG00000106648|Q7Z4T8-2|GALNTL5	nc|ENSG00000106648|Q7Z4T8-2|GALNTL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.5378723144531	3	357.537953	1069.59203	0.30426	0.00010878	-0.49156	-0.00017575	-0.1873	-6.6967E-05	357.53777338365137	23.37	0.31577	23.37	23.263	23.578	0					16	6	3	0	0	0	0.59277	1	8052	8052		35.152	0	1	2496800			29529	2452	20117	20189	29919	29919					0.06001735714221468
PLSPDALLDT	10	Unmodified	_PLSPDALLDT_					0	0	0			REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.27880859375	2	521.276772	1040.53899	1.4393	0.00075025	1.9623	0.0010229	3.4016	0.0017732	521.2777842020885	26.983	0.23801	26.983	26.914	27.152	0					8	6	2	0	0	0	0.60076	1	8763	8763		34.173	0.65696	1	96319	+		29530	16472	20118	20190	29920	29920					0.020343131409163107
PLSSPQQTQL	10	Unmodified	_PLSSPQQTQL_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7952880859375	2	549.793121	1097.57169	3.7659	0.0020705	0.9115	0.00050114	4.6774	0.0025716	549.7936384510365	52.158	0.18926	52.158	52.067	52.257	0					18	11	2	0	0	0	0.61238	1	20291	20291		32.751	1.2207	1	149710			29531	5263	20119	20191	29921	29921					0.02680520263766084
PLSVYLPTG	9	Unmodified	_PLSVYLPTG_					0	0	0		ENST00000557275.5_1_14:95875019-95875331:-|nuORF	ENST00000557275.5_1_14:95875019-95875331:-|nuORF	ENST00000557275.5_1_14:95875019-95875331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7642517089844	2	473.765843	945.517133	-0.58756	-0.00027837	-4.1838	-0.0019822	-4.7714	-0.0022605	473.7639514341352	14.112	0.21034	14.112	13.961	14.171	0					8	4	2	0	0	0	0.5654	1	3428	3428		25.45	0.94616	1	74280			29532	10671	20120	20192	29922	29922					0.04219553182997515
PLTDAPTKPH	10	Unmodified	_PLTDAPTKPH_					0	0	0			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.790771484375	2	538.790381	1075.56621	0.68971	0.00037161	0.065382	3.5227E-05	0.75509	0.00040684	538.7905441699355	29.838	0.36704	29.838	29.698	30.065	0					16	7	3	0	0	0	0.46215	1	10953	10953		49.442	6.9671	1	125050	+		29533	16506	20121	20193	29923	29923					0.03144841471953441
PLTEFSARAC	10	Unmodified	_PLTEFSARAC_					0	0	0			REV__ENST00000531361.1_1_1:26149550-26156105:+|nuORF	REV__ENST00000531361.1_1_1:26149550-26156105:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.76708984375	2	547.768591	1093.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.037	1	16.037	15.537	16.537	0								0	0	0	0.40446	1	3769	3769		29.15	0	1		+		29534	14204	20122	20194	29924	29924					-0.020390912968423436
PLTPPITQY	9	Unmodified	_PLTPPITQY_					0	0	0		ENST00000587860.1_1_18:46287547-46385927:+|nuORF;ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF	ENST00000587860.1_1_18:46287547-46385927:+|nuORF	ENST00000587860.1_1_18:46287547-46385927:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2830810546875	2	515.2844	1028.55425	0.15183	7.8233E-05	-3.041	-0.001567	-2.8891	-0.0014887	515.2831444707128	34.777	0.3585	34.777	34.538	34.897	0					11	7	2	0	0	0	0.41113	1	13409	13409		40.778	3.6191	1	64186			29535	3888	20123	20195	29925	29925					0.04111224728740126
PLTSMMLK	8	Unmodified	_PLTSMMLK_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7508239746094	2	460.750824	919.487096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.14	1	17.14	16.64	17.64	0								0	0	0	1.7419	1	4211	4211		38.806	1.647	1		+		29536	13585	20124	20196	29926	29926					0.02413154921794103
PLTVAQKK	8	Unmodified	_PLTVAQKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.78167724609375	2	442.781828	883.549102	-0.26279	-0.00011636	-0.56532	-0.00025032	-0.82812	-0.00036668	442.78165440505506	18.805	0.28873	18.805	18.611	18.9	0					11	6	2	0	0	0	0.61938	1	5844	5844		45.952	1.8352	1	110230			29537	6325	20125	20197	29927	29927					0.10266965656796856
PLVGSHPL	8	Unmodified	_PLVGSHPL_					0	0	0		ENST00000595091.6_2_19:53854892-53855471:+|nuORF	ENST00000595091.6_2_19:53854892-53855471:+|nuORF	ENST00000595091.6_2_19:53854892-53855471:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	410.23974609375	2	410.239796	818.465038	-0.63638	-0.00026107	0.78969	0.00032396	0.15331	6.2894E-05	410.24004146866577	36.9	0.25809	36.9	36.811	37.069	0					12	7	2	0	0	0	0.67475	1	13955	13955		37.028	0	1	199610			29538	10995	20126	20198	29928	29928					0.04854434559899801
PLVKATVDL	9	Unmodified	_PLVKATVDL_					0	0	0			REV__ENSG00000156463|ENST00000359120|SH3RF2	REV__ENSG00000156463|ENST00000359120|SH3RF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2942199707031	2	478.294768	954.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.194	1	34.194	33.694	34.694	0								0	0	0	0.19749	1	12716	12716		51.335	1.8939	1		+		29539	15632	20127	20199	29929	29929					0.09587815108409359
PLVKGRSPDKE	11	Unmodified	_PLVKGRSPDKE_					0	0	0			REV__ENST00000515521.5_1_4:3422373-3428454:+|nuORF	REV__ENST00000515521.5_1_4:3422373-3428454:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.2351379394531	3	409.234822	1224.68264	0.12349	5.0535E-05	-0.55818	-0.00022842	-0.43469	-0.00017789	409.23503823105983	30.361	0.15776	30.361	30.262	30.42	0					5	3	2	0	0	0	0.79869	1	10340	10340		15.333	0	1	224860	+		29540	19912	20128	20200	29930	29930					0.07928159971856985
PLVPSAQPG	9	Unmodified	_PLVPSAQPG_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.2424621582031	2	433.242535	864.470518	-0.46354	-0.00020083	0.015589	6.754E-06	-0.44795	-0.00019407	433.24252472131917	30.196	0.88986	30.196	29.818	30.708	0					33	19	2	0	0	0	0.33044	1	11145	11145		47.657	1.7054	1	188890	+		29541	16843	20129	20201	29931	29931					0.032861133517030794
PLYFLAPSV	9	Unmodified	_PLYFLAPSV_					0	0	0			REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7877502441406	2	503.784036	1005.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.039	1	21.039	20.539	21.539	0								0	0	0	0.10093	1	6784	6784		71.378	4.9486	1		+		29542	19858	20130	20202	29932	29932					0.0509643007970908
PLYHPMPA	8	Unmodified	_PLYHPMPA_					0	0	0			REV__ENST00000320743.7_2_12:59313831-59314026:-|nuORF	REV__ENST00000320743.7_2_12:59313831-59314026:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.23394775390625	2	463.233656	924.452759	-0.33357	-0.00015452	2.4152	0.0011188	2.0817	0.00096429	463.2345590043314	20.938	0.11652	20.938	20.876	20.992	0					5	3	2	0	0	0	0.63381	1	5980	5980		43.626	8.0078	1	37788	+		29543	18323	20131	20203	29933	29933					-0.012489251747979324
PMAFAKPKL	9	Unmodified	_PMAFAKPKL_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45332380-45332650:-|nuORF	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7923583984375	2	501.793881	1001.57321	0.6932	0.00034784	0.39792	0.00019967	1.0911	0.00054752	501.7943144422756	30.17	0.4871	30.17	30.05	30.537	0					29	12	3	0	0	0	0.51817	1	10939	10939		30.504	0	1	1006200			29544	4772	20132	20204	29934	29934					0.07248482818806679
PMDKNLNEL	9	Unmodified	_PMDKNLNEL_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2691040039062	2	537.268424	1072.5223	1.9755	0.0010614	-0.46264	-0.00024856	1.5129	0.00081282	537.2682076689513	38.975	2.6514	38.975	38.111	40.762	0					186	58	4	0	0	0	0.17854	1	15466	15466		64.207	0	1	2299200			29545	813	20133	20205	29935	29935					-0.011065110166782688
PMIARCLLA	9	Unmodified	_PMIARCLLA_					0	0	0		ENST00000502464.5_1_5:65018131-65058826:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENST00000502464.5_1_5:65018131-65058826:+|nuORF	ENST00000502464.5_1_5:65018131-65058826:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.77886962890625	2	494.277541	986.540528	0.75671	0.00037402	-1.1783	-0.00058239	-0.42155	-0.00020836	494.2770285944264	31.54	0.4983	31.54	31.372	31.871	0					35	12	5	0	0	0	0.27781	1	11541	11541		52.299	4.6418	1	1773000			29546	10155	20134	20206	29936	29936					0.046719524243144406
PMICVSQTM	9	Carbamidomethyl (C),2 Oxidation (M)	_PM(Oxidation (M))IC(Carbamidomethyl (C))VSQTM(Oxidation (M))_	PMIC(1)VSQTM	PM(1)ICVSQTM(1)	PMIC(48)VSQTM	PM(48)ICVSQTM(48)	0	1	2			REV__ENST00000209873.8_1_12:53708220-53708565:-|nuORF	REV__ENST00000209873.8_1_12:53708220-53708565:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7350463867188	2	549.735045	1097.45554	1.8257	0.0010037	0.82666	0.00045444	2.6524	0.0014581	549.7354016153788	47.901	0.97213	47.901	47.273	48.245	0					79	52	2	0	0	0	0.33044	1	18898	18898		47.657	9.8458	1	98127	+		29547	17874	20135	20207	29937	29937	626	669;670			-0.08929205894446568
PMLQKLLNM	9	Oxidation (M)	_PMLQKLLNM(Oxidation (M))_		PMLQKLLNM(1)		PM(-54)LQKLLNM(54)	0	0	1		ENST00000545335.5_2_10:22826185-22828949:-|nuORF	ENST00000545335.5_2_10:22826185-22828949:-|nuORF	ENST00000545335.5_2_10:22826185-22828949:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3038940429688	2	552.301213	1102.58787	3.672	0.0020281	-1.0291	-0.00056838	2.6429	0.0014597	552.3011134315368	43.683	0.52376	43.683	43.378	43.902	0					24	16	3	0	0	0	0.25109	1	17455	17455		55.504	7.8469	2	153180			29548	10575	20136	20208	29938	29938		423			0.04068186904646609
PMNRKPIK	8	Unmodified	_PMNRKPIK_					0	0	0			REV__ENST00000455213.6_1_8:11627262-11629042:+|nuORF	REV__ENST00000455213.6_1_8:11627262-11629042:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.29290771484375	2	492.294579	982.574605	-2.6443	-0.0013018	-0.095146	-4.684E-05	-2.7394	-0.0013486	492.29410755861744	35.055	0.21474	35.055	34.977	35.192	0					13	6	3	0	0	0	0.70055	1	12448	12448		33.516	9.3128	1	140490	+		29549	18141	20137	20209	29939	29939					0.08262116907576456
PMNSSGVHRKS	11	Unmodified	_PMNSSGVHRKS_					0	0	0		ENST00000442582.1_2_2:73227612-73268044:-|nuORF;ENST00000272433.6_1_2:73228703-73285715:-|nuORF;ENST00000461352.5_1_2:73195640-73285715:-|nuORF	ENST00000442582.1_2_2:73227612-73268044:-|nuORF	ENST00000442582.1_2_2:73227612-73268044:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.2993774414062	2	600.301121	1198.58769	0.47126	0.0002829	-3.5906	-0.0021555	-3.1194	-0.0018726	600.2994161039829	29.173	0.19818	29.173	29.112	29.31	0					8	5	2	0	0	0	0.69524	1	9791	9791		28.081	2.5074	1	66639			29550	8386	20138	20210	29940	29940					-0.003660967709720353
PMPGVYFFAY	10	Unmodified	_PMPGVYFFAY_					0	0	0		ENSG00000186897|ENST00000334221|C1QL4	ENSG00000186897|ENST00000334221|C1QL4	ENSG00000186897|ENST00000334221|C1QL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.2805786132812	2	596.280803	1190.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.472	1	36.472	35.972	36.972	0								0	0	0	0.41219	1	14207	14207		26.796	0.10319	1				29551	7170	20139	20211	29941	29941					-0.040598311433086565
PMPRPPMLPF	10	Unmodified	_PMPRPPMLPF_					0	0	0			REV__SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant	REV__SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	591.81103515625	2	591.811748	1181.60894	-1.7835	-0.0010555	1.6152	0.0009559	-0.16828	-9.959E-05	591.8128465207067	29.688	0.16115	29.688	29.604	29.765	0					7	4	2	0	0	0	0.68774	1	10027	10027		7.1934	0	1	91562	+		29552	15625	20140	20212	29942	29942					0.025401970041684763
PMQEHATTAI	10	Unmodified	_PMQEHATTAI_					0	0	0			REV__ZAP70|p.R160Q|1|0.41|ENSG00000115085|chr2:97725168-97725168|G/A|missense_variant	REV__ZAP70|p.R160Q|1|0.41|ENSG00000115085|chr2:97725168-97725168|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7657470703125	2	549.766049	1097.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.979	1	33.979	33.479	34.479	0								0	0	0	0.38322	1	11438	11438		35.618	6.4482	1		+		29553	22299	20141	20213	29943	29943					-0.027313951594805985
PMQPGPVLHC	10	Unmodified	_PMQPGPVLHC_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|361|3|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|361|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.17529296875	3	360.177262	1077.50996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.312	1	45.312	44.812	45.812	0								0	0	0	0.41967	1	14604	14604		24.519	2.7388	1		+		29554	20730	20142	20214	29944	29944					-0.025698259606997453
PMRKAALR	8	Unmodified	_PMRKAALR_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7896423339844	2	471.786921	941.55929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.213	1	23.213	22.713	23.713	0								0	0	0	1.7419	1	6943	6943		19.36	0	1				29555	2916	20143	20215	29945	29945					0.08617250110387431
PMSIKPMK	8	Unmodified	_PMSIKPMK_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2581787109375	2	466.258816	930.50308	0.06287	2.9314E-05	-2.1384	-0.00099706	-2.0756	-0.00096775	466.25791700919876	26.722	0.14251	26.722	26.658	26.8	0					9	5	2	0	0	0	0.61938	1	8153	8153		45.952	1.5748	1	62503	+		29556	14419	20144	20216	29946	29946					0.035048611587058076
PMSKLKEKM	9	Oxidation (M)	_PM(Oxidation (M))SKLKEKM_		PM(1)SKLKEKM		PM(80)SKLKEKM(-80)	0	0	1			REV__ENSG00000140057|ENST00000267584|AK7	REV__ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.8682861328125	3	369.868205	1106.58279	1.012	0.00037431	-0.65101	-0.00024079	0.36101	0.00013353	369.86817254609014	19.24	0.56219	19.24	18.818	19.38	0					13	6	3	0	0	0	0.095583	1	6052	6052		80.455	7.5754	2	1212100	+		29557	15059	20145	20217	29947	29947		571			0.033758830420310915
PMSVRTPEL	9	Unmodified	_PMSVRTPEL_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2743530273438	2	515.273509	1028.53247	1.4095	0.00072628	0.87297	0.00044982	2.2825	0.0011761	515.2742735812241	32.134	0.24588	32.134	31.945	32.191	0					10	5	3	0	0	0	0.18605	1	12197	12197		63.306	20.91	1	325610	+		29558	12091	20146	20218	29948	29948					0.019340967085327065
PMSVSVGGAF	10	Unmodified	_PMSVSVGGAF_					0	0	0		ARHGEF17|p.D364V|1|0.19|ENSG00000110237|chr11:73309729-73309729|A/T|missense_variant	ARHGEF17|p.D364V|1|0.19|ENSG00000110237|chr11:73309729-73309729|A/T|missense_variant	ARHGEF17|p.D364V|1|0.19|ENSG00000110237|chr11:73309729-73309729|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2357482910156	2	476.233853	950.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.049	1	34.049	33.549	34.549	0								0	0	0	0.28441	1	13090	13090		53.351	2.016	1				29559	216	20147	20219	29949	29949					-0.024055502455780697
PMVQNDGL	8	Unmodified	_PMVQNDGL_					0	0	0			REV__ENSG00000268606|ENST00000684311|MAGEA2	REV__ENSG00000268606|ENST00000684311|MAGEA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2108154296875	2	437.210378	872.406203	-0.63374	-0.00027708	0.53994	0.00023607	-0.093805	-4.1013E-05	437.2108893162646	37.258	0.20496	37.258	37.173	37.378	0					11	10	2	0	0	0	0.59411	1	13347	13347		50.025	0	1	44899	+		29560	16926	20148	20220	29950	29950					-0.03510409796740532
PNDAHPQTQV	10	Unmodified	_PNDAHPQTQV_					0	0	0			REV__ENSG00000129028|ENST00000249861|THAP10	REV__ENSG00000129028|ENST00000249861|THAP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.7686157226562	2	553.764894	1105.51524	4.5311	0.0025092	0.74572	0.00041295	5.2768	0.0029221	553.7652433454068	36.009	0.30929	36.009	35.864	36.173	0					32	13	3	0	0	0	0.54197	1	12166	12166		40.778	5.1599	1	145630	+		29561	14536	20149	20221	29951	29951					-0.03330107572924135
PNEERKPK	8	Unmodified	_PNEERKPK_					0	0	0			REV__ENST00000527753.5_1_11:45959861-45986961:-|nuORF	REV__ENST00000527753.5_1_11:45959861-45986961:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2745056152344	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.9	1	13.9	13.4	14.4	0								0	0	0	1.7419	1	3337	3337		68.787	1.2932	1		+		29562	14797	20150	20222	29952	29952					0.036836881577073655
PNEMMREIRK	10	Oxidation (M)	_PNEM(Oxidation (M))MREIRK_		PNEM(0.5)M(0.5)REIRK		PNEM(0)M(0)REIRK	0	0	1		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2	ENSG00000072518|ENST00000402010|MARK2	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	660.3334350585938	2	660.331564	1318.64858	2.6808	0.0017702	-0.14226	-9.3939E-05	2.5385	0.0016763	660.3313974047551	38.818	0.20839	38.818	38.712	38.92	0					11	4	3	0	0	0	0.46215	1	15302	15302		49.442	11.63	2	345390			29563	1494	20151	20223	29953	29953		67;68			0.0019967221692240855
PNESCNGPVHS	11	Unmodified	_PNESCNGPVHS_					0	0	0			REV__ENST00000466618.1_1_2:242002912-242027813:+|nuORF	REV__ENST00000466618.1_1_2:242002912-242027813:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7420043945312	2	570.740562	1139.46657	1.6252	0.00092755	-1.2296	-0.00070179	0.39556	0.00022576	570.7399102888324	12.381	0.40528	12.381	12.177	12.582	0					28	12	3	0	0	0	0.77123	1	2569	2569		20.837	4.364	1	534150	+		29564	19421	20152	20224	29954	29954					-0.0975834420432875
PNGRLGPP	8	Unmodified	_PNGRLGPP_					0	0	0			REV__COL5A2|p.D946N|1|0.08|ENSG00000204262|chr2:189051415-189051415|C/T|missense_variant	REV__COL5A2|p.D946N|1|0.08|ENSG00000204262|chr2:189051415-189051415|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.2273864746094	2	404.22722	806.439886	1.0133	0.00040959	-0.78257	-0.00031634	0.2307	9.3254E-05	404.2269563424919	28.67	0.69556	28.67	28.515	29.211	0					27	14	3	0	0	0	0.67394	1	10519	10519		37.159	0.13063	1	2399300	+		29565	12564	20153	20225	29955	29955					0.028923797573384036
PNGVSAVALLV	11	Unmodified	_PNGVSAVALLV_					0	0	0		ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	ENSG00000136819|ENST00000372447|C9orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.3114013671875	2	520.310949	1038.60735	-1.348	-0.00070139	1.5381	0.00080031	0.19011	9.8914E-05	520.3115613389849	35.708	0.99655	35.708	35.563	36.56	0					104	39	5	0	0	0	0.58789	1	13064	13064		37.812	8.662	1	20478000			29566	4111	20154	20226	29956	29956					0.08958602511415847
PNHGIMTSE	9	Unmodified	_PNHGIMTSE_					0	0	0			REV__tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	REV__tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2239074707031	2	493.224017	984.43348	-2.5785	-0.0012718	1.8546	0.00091474	-0.7239	-0.00035704	493.2251608928837	24.332	0.21977	24.332	24.206	24.426	0					9	5	3	0	0	0	0.2873	1	7562	7562		51.335	1.7994	1	204130	+		29567	22144	20155	20227	29957	29957					-0.05935926256347557
PNIFFTIK	8	Unmodified	_PNIFFTIK_					0	0	0		ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.F173Lfs*5|3|0.42|ENSG00000135317|chr6:85565362-85565362|A/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2807922363281	2	490.284203	978.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.089	1	40.089	39.589	40.589	0								0	0	0	1.7419	1	15789	15789		26.796	0	1				29568	3981	20156	20228	29958	29958					0.06371849799563734
PNIKALIEM	9	Unmodified	_PNIKALIEM_					0	0	0		tr|U7T5X4|U7T5X4_FUSNUDNApolymeraseIIIsubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00119PE=4SV=1	tr|U7T5X4|U7T5X4_FUSNUDNApolymeraseIIIsubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00119PE=4SV=1	tr|U7T5X4|U7T5X4_FUSNUDNApolymeraseIIIsubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00119PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.794189453125	2	514.794078	1027.5736	0.024408	1.2565E-05	0.6697	0.00034476	0.6941	0.00035732	514.794441821499	33.956	0.23566	33.956	33.869	34.105	0					10	6	2	0	0	0	0.4966	1	12612	12612		32.812	2.3088	1	695610			29569	23022	20157	20229	29959	29959					0.060918577480151725
PNKYTAEVF	9	Unmodified	_PNKYTAEVF_					0	0	0			REV__nc|ENSG00000171109|Q8IWA4-2|MFN1	REV__nc|ENSG00000171109|Q8IWA4-2|MFN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7732543945312	2	534.771657	1067.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.025	1	39.025	38.525	39.525	0								0	0	0	0.27166	1	13132	13132		40.573	1.7665	1		+		29570	16400	20158	20230	29960	29960					-0.0023024979368528875
PNNLLLKK	8	Unmodified	_PNNLLLKK_					0	0	0			REV__tr|U7SRG1|U7SRG1_FUSNUPhosphateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01589PE=3SV=1	REV__tr|U7SRG1|U7SRG1_FUSNUPhosphateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01589PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.30267333984375	2	470.302927	938.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.606	1	11.606	11.106	12.106	0								0	0	0	1.7419	1	2287	2287		19.36	1.995	1		+		29571	21850	20159	20231	29961	29961					0.11954941065175717
PNRMWLQP	8	Unmodified	_PNRMWLQP_					0	0	0			REV__ENST00000576789.1_3_19:7427669-7440673:+|nuORF	REV__ENST00000576789.1_3_19:7427669-7440673:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2676391601562	2	521.268561	1040.52257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.616	1	37.616	37.116	38.116	0								0	0	0	1.7419	1	13460	13460		31.955	5.1588	1		+		29572	20419	20160	20232	29962	29962					0.003929534938151846
PNSKNEKAL	9	Unmodified	_PNSKNEKAL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7741394042969	2	500.774731	999.534909	0.15218	7.6208E-05	-0.6723	-0.00033667	-0.52012	-0.00026046	500.7744839660199	22.774	0.35278	22.774	22.694	23.047	0					18	8	3	0	0	0	0.16002	1	6859	6859		66.429	4.3219	1	140870			29573	3235	20161	20233	29963	29963					0.03512268437839339
PNSKVESK	8	Unmodified	_PNSKVESK_					0	0	0		KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7419738769531	2	444.742899	887.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.997	1	17.997	17.497	18.497	0								0	0	0	1.7419	1	5183	5183		62.107	3.8775	1				29574	1282	20162	20234	29964	29964					0.023009080007682314
PNSTNQMLY	9	Unmodified	_PNSTNQMLY_					0	0	0		nc|ENSG00000122145|Q9Y458-2|TBX22;ENSG00000122145|ENST00000373296|TBX22	nc|ENSG00000122145|Q9Y458-2|TBX22	nc|ENSG00000122145|Q9Y458-2|TBX22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2449951171875	2	534.244949	1066.47534	0.19429	0.0001038	-0.0035539	-1.8987E-06	0.19074	0.0001019	534.2449663513485	31.169	0.19822	31.169	31.077	31.275	0					11	7	2	0	0	0	0.53083	1	10292	10292		29.15	0	1	154240			29575	3251	20163	20235	29965	29965					-0.05523370567834718
PNTKEKGKK	9	Unmodified	_PNTKEKGKK_					0	0	0			REV__ENST00000372857.7_1_1:40042222-40042411:-|nuORF	REV__ENST00000372857.7_1_1:40042222-40042411:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.8731994628906	3	343.873224	1028.59784	0.68079	0.00023411	-2.1204	-0.00072914	-1.4396	-0.00049504	343.87275255543864	12.519	0.077857	12.519	12.471	12.549	0					4	2	2	0	0	0	0.42902	1	2659	2659		31.634	0	1	42010	+		29576	18675	20164	20236	29966	29966					0.08468834225891442
PNWFLFAKQ	9	Unmodified	_PNWFLFAKQ_					0	0	0			REV__nc|ENSG00000163288|P18505-2|GABRB1	REV__nc|ENSG00000163288|P18505-2|GABRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.3194580078125	2	575.805834	1149.59712	0.99604	0.00057353	-0.39014	-0.00022464	0.6059	0.00034888	575.804948939419	29.725	0.31662	29.725	29.616	29.933	0					9	6	2	0	0	0	0.43426	1	11025	11025		38.806	8.4884	1	233620	+		29577	21093	20165	20237	29967	29967					0.028300395768155795
PNWRSKTLF	9	Unmodified	_PNWRSKTLF_					0	0	0			REV__ENST00000327473.8_1_19:4655256-4655514:+|nuORF	REV__ENST00000327473.8_1_19:4655256-4655514:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.5450744628906	3	383.545219	1147.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.958	1	41.958	41.458	42.458	0								0	0	0	0.3428	1	16717	16717		26.693	4.1133	1		+		29578	18362	20166	20238	29968	29968					0.04592540462795114
PPAALSDG	8	Unmodified	_PPAALSDG_					0	0	0			REV__EML3|p.L72Tfs*46|1|0.31|ENSG00000149499|chr11:62611326-62611327|-/C|frameshift_variant	REV__EML3|p.L72Tfs*46|1|0.31|ENSG00000149499|chr11:62611326-62611327|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.18475341796875	2	364.184686	726.354819	-2.0613	-0.0007507	2.6145	0.00095217	0.5532	0.00020147	364.1853888333289	17.53	0.10505	17.53	17.493	17.598	0					6	3	2	0	0	0	0.79176	1	4395	4395		21.702	0	1	75130	+		29579	12796	20167	20239	29969	29969					-0.01930410499141999
PPAESVPLIG	10	Unmodified	_PPAESVPLIG_					0	0	0		ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2761535644531	2	490.276575	978.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.392	1	36.392	35.892	36.892	0								0	0	0	0.37816	1	13028	13028		37.159	0.71236	1				29580	3607	20168	20240	29970	29970					0.04846938211721863
PPAGARGR	8	Unmodified	_PPAGARGR_					0	0	0		ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2252197265625	2	391.225011	780.435469	0.43531	0.0001703	0.00032409	1.2679E-07	0.43563	0.00017043	391.2250438385679	45.056	0.37867	45.056	44.791	45.169	0					30	21	2	0	0	0	0.7914	1	17461	17461		14.664	14.664	1	60381			29581	9622	20169	20241	29971	29971					0.03646915334422829
PPAGRGRP	8	Unmodified	_PPAGRGRP_					0	0	0		ENST00000320580.8_1_11:66010778-66011036:+|nuORF	REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.2328186035156	2	404.232836	806.45112	-0.68951	-0.00027872	0.48847	0.00019746	-0.20104	-8.1266E-05	404.2329297591067	49.225	0.58255	49.225	48.997	49.579	0					69	34	4	0	0	0	0.78999	1	14962	14962		13.775	0	1	1284400	+		29582	14450	20170	20242	29972	29972					0.040152018514731935
PPALSHPG	8	Unmodified	_PPALSHPG_					0	0	0		ENST00000539325.1_3_11:63994255-63994456:+|nuORF	ENST00000539325.1_3_11:63994255-63994456:+|nuORF	ENST00000539325.1_3_11:63994255-63994456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.20855712890625	2	388.208495	774.402438	-0.044837	-1.7406E-05	0.086523	3.3589E-05	0.041685	1.6182E-05	388.2085342717683	15.655	0.095901	15.655	15.601	15.697	0					6	2	3	0	0	0	0.79176	1	4094	4094		21.702	0	1	694560			29583	10520	20171	20243	29973	29973					0.0062128849172040645
PPAMVNLFI	9	Unmodified	_PPAMVNLFI_					0	0	0			REV__ENSG00000117154|ENST00000251296|IGSF21	REV__ENSG00000117154|ENST00000251296|IGSF21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2784729003906	2	501.278063	1000.54157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.849	1	42.849	42.349	43.349	0								0	0	0	0.25856	1	16804	16804		42.474	0	1		+		29584	14184	20172	20244	29974	29974					0.041324900648533
PPAPAGGL	8	Unmodified	_PPAPAGGL_					0	0	0		ENSG00000225556|ENST00000694868|C2CD4D	REV__ENST00000562648.2_1_16:743493-744282:-|nuORF	REV__ENST00000562648.2_1_16:743493-744282:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.19232177734375	2	340.192314	678.370075	0.51112	0.00017388	-0.47336	-0.00016103	0.037756	1.2844E-05	340.1921671358582	34.808	0.23596	34.808	34.718	34.954	0					10	6	2	0	0	0	0.79462	1	13007	13007		16.705	0	1	103800			29585	7868	20173	20245	29975	29975					0.018025010887072312
PPAPLGKG	8	Unmodified	_PPAPLGKG_					0	0	0			REV__nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000163635|O15265-3|ATXN7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.7198486328125	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.917	1	44.917	44.417	45.417	0								0	0	0	1.7419	1	14520	14520		14.664	5.1935	1		+		29586	15902	20174	20246	29976	29976					0.04962763014145821
PPAPPPAPGG	10	Unmodified	_PPAPPPAPGG_					0	0	0			REV__PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant	REV__PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2294616699219	2	429.229428	856.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.427	1	39.427	38.927	39.927	0								0	0	0	0.38459	1	14053	14053		35.201	0	1		+		29587	15873	20175	20247	29977	29977					0.010338441802332454
PPAPVVGG	8	Unmodified	_PPAPVVGG_					0	0	0		ENST00000540139.5_3_11:61120480-61121493:-|nuORF;ENST00000535177.1_1_11:61120996-61124198:-|nuORF	ENST00000540139.5_3_11:61120480-61121493:-|nuORF	ENST00000540139.5_3_11:61120480-61121493:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.1980285644531	2	347.200139	692.385725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.67	1	41.67	41.17	42.17	0								0	0	0	1.7419	1	13820	13820		16.705	6.5202	1				29588	10478	20176	20248	29978	29978					0.02722787605762278
PPAQPRPLAQ	10	Unmodified	_PPAQPRPLAQ_					0	0	0			REV__ENSG00000196782|ENST00000509479|MAML3	REV__ENSG00000196782|ENST00000509479|MAML3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.873291015625	3	358.873336	1073.59818	0.48438	0.00017383	-0.70711	-0.00025376	-0.22273	-7.9933E-05	358.87309545002074	19.207	0.24581	19.207	19.11	19.356	0					14	5	4	0	0	0	0.65895	1	5767	5767		27.047	0	1	1551500	+		29589	17287	20177	20249	29979	29979					0.06432253945718003
PPARPGPSSTG	11	Unmodified	_PPARPGPSSTG_					0	0	0			REV__ENST00000374316.9_1_6:33588911-33589319:+|nuORF	REV__ENST00000374316.9_1_6:33588911-33589319:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2645263671875	2	512.26453	1022.51451	-0.11511	-5.8968E-05	0.26347	0.00013496	0.14835	7.5997E-05	512.2646824820671	19.181	0.1006	19.181	19.121	19.222	0					5	3	2	0	0	0	0.78104	1	4910	4910		19.104	3.4617	1	127400	+		29590	18693	20178	20250	29980	29980					0.004150977780454923
PPAVAAAG	8	Unmodified	_PPAVAAAG_					0	0	0		ANO8|p.P1010Lfs*309|1|0.21|ENSG00000074855|chr19:17325019-17325019|G/-|frameshift_variant;ENSG00000106415|ENST00000223145|GLCCI1;ENSG00000112238|ENST00000369215|PRDM13	ANO8|p.P1010Lfs*309|1|0.21|ENSG00000074855|chr19:17325019-17325019|G/-|frameshift_variant	ANO8|p.P1010Lfs*309|1|0.21|ENSG00000074855|chr19:17325019-17325019|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.1843566894531	2	327.184489	652.354425	0.28856	9.4412E-05	-0.38223	-0.00012506	-0.093668	-3.0647E-05	327.1843525653403	15.331	0.61817	15.331	15.161	15.78	0					37	24	2	0	0	0	0.70073	1	3324	3324		33.493	0	1	87381			29591	166	20179	20251	29981	29981					0.014342145716568666
PPCCSPPSC	9	Unmodified	_PPCCSPPSC_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF;ENST00000533865.5_1_11:88068195-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.16546630859375	2	445.663892	889.31323	0.81622	0.00036376	0.013431	5.9855E-06	0.82965	0.00036975	445.6658000939626	49.905	0.50085	49.905	49.696	50.197	0					81	22	5	0	0	0	0.57706	1	19798	19798		24.203	4.8428	1	967510			29592	10419	20180	20252	29982	29982					-0.13585373845990034
PPDICSRTVW	10	Unmodified	_PPDICSRTVW_					0	0	0		MMADHC|p.N77Tfs*2|1|0.25|ENSG00000168288|chr2:149579575-149579575|C/-|frameshift_variant;ENSG00000168288|ENST00000303319|MMADHC	MMADHC|p.N77Tfs*2|1|0.25|ENSG00000168288|chr2:149579575-149579575|C/-|frameshift_variant	MMADHC|p.N77Tfs*2|1|0.25|ENSG00000168288|chr2:149579575-149579575|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.2871704101562	2	587.289691	1172.56483	0.11454	6.7267E-05	-3.6198	-0.0021259	-3.5053	-0.0020586	587.2873793878488	11.087	0.044466	11.087	11.051	11.096	0					4	2	2	0	0	0	0.66185	1	2110	2110		26.693	1.1189	1	59244			29593	6078	20181	20253	29983	29983					-0.014551158884614779
PPEREQKIQ	9	Unmodified	_PPEREQKIQ_					0	0	0		CNTN6|p.W320R|1|0.61|ENSG00000134115|chr3:1325826-1325826|T/A|missense_variant	CNTN6|p.W320R|1|0.61|ENSG00000134115|chr3:1325826-1325826|T/A|missense_variant	CNTN6|p.W320R|1|0.61|ENSG00000134115|chr3:1325826-1325826|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.8065795898438	2	562.806562	1123.59857	-0.98686	-0.00055541	1.7611	0.00099117	0.77426	0.00043576	562.8077453454179	20.47	0.099174	20.47	20.422	20.521	0					4	2	2	0	0	0	0.22377	1	5771	5771		58.782	14.405	1	105070			29594	579	20182	20254	29984	29984					0.04171628874951239
PPERQIVVG	9	Unmodified	_PPERQIVVG_					0	0	0		PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant;PPIP5K2|p.V1179Yfs*3|2|0.15|ENSG00000145725|chr5:103194934-103194934|A/-|frameshift_variant;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.1940612792969	3	332.194186	993.56073	-1.907	-0.0006335	1.9584	0.00065057	0.051396	1.7073E-05	332.19481999134206	29.412	0.13191	29.412	29.326	29.458	0					8	3	3	0	0	0	0.5392	1	9881	9881		35.618	16.515	1	107410			29595	4685	20183	20255	29985	29985					0.06369162680141471
PPEVSALI	8	Unmodified	_PPEVSALI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.23809814453125	2	413.239461	824.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.089	1	45.089	44.589	45.589	0								0	0	0	1.7419	1	14556	14556		21.702	0	1				29596	7942	20184	20256	29986	29986					0.04511595120197853
PPFLHPHQL	9	Unmodified	_PPFLHPHQL_					0	0	0			REV__PTPN23|p.L1014Pfs*68|1|0.36|ENSG00000076201|chr3:47410831-47410832|-/C|frameshift_variant	REV__PTPN23|p.L1014Pfs*68|1|0.36|ENSG00000076201|chr3:47410831-47410832|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.301513671875	2	543.298176	1084.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.562	1	45.562	45.062	46.062	0								0	0	0	0.29985	1	17615	17615		35.201	1.0282	1		+		29597	13245	20185	20257	29987	29987					0.042891727796586565
PPFTIPAY	8	Unmodified	_PPFTIPAY_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2400207519531	2	453.242004	904.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.495	1	34.495	33.995	34.995	0								0	0	0	1.7419	1	12854	12854		37.028	1.4102	1		+		29598	16212	20186	20258	29988	29988					0.01339898982791965
PPFVPIML	8	Unmodified	_PPFVPIML_					0	0	0			REV__SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant	REV__SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2651672363281	2	457.264425	912.514297	0.048747	2.229E-05	0.21059	9.6294E-05	0.25934	0.00011858	457.26441415680983	47.456	0.87988	47.456	47.303	48.183	0					64	56	2	0	0	0	0.70073	1	15035	15035		33.493	10.45	1	66994	+		29599	14749	20187	20259	29989	29989					0.054540065244850666
PPGARRGP	8	Unmodified	_PPGARRGP_					0	0	0		ENST00000223145.9_1_7:8008821-8009403:+|nuORF	ENST00000223145.9_1_7:8008821-8009403:+|nuORF	ENST00000223145.9_1_7:8008821-8009403:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	404.2326354980469	2	404.232836	806.45112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.241	1	49.241	48.741	49.741	0								0	0	0	1.7419	1	16248	16248		28.254	0	1				29600	8183	20188	20260	29990	29990					0.040152018514731935
PPGLLVIAPGN	11	Unmodified	_PPGLLVIAPGN_					0	0	0		nc|ENSG00000174306|Q9H4I2-2|ZHX3;ENSG00000174306|ENST00000683867|ZHX3	nc|ENSG00000174306|Q9H4I2-2|ZHX3	nc|ENSG00000174306|Q9H4I2-2|ZHX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3140258789062	2	524.313492	1046.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.769	1	45.769	45.269	46.269	0								0	0	0	0.45674	1	18338	18338		15.642	6.8195	1				29601	6482	20189	20261	29991	29991					0.09098906374060789
PPGPAGSA	8	Unmodified	_PPGPAGSA_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	327.16510009765625	2	327.166296	652.31804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.927	1	43.927	43.427	44.427	0								0	0	0	1.7419	1	17599	17599		28.254	0	1				29602	4316	20190	20262	29992	29992					-0.022026623250553712
PPGPPGPPGH	10	Unmodified	_PPGPPGPPGH_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3;COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2;COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant;COL9A3|p.P243Lfs*290|1|0.43|ENSG00000092758|chr20:62826243-62826243|C/-|frameshift_variant;ENSG00000092758|ENST00000649368|COL9A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant;ENSG00000092758|ENST00000649368|COL9A3	ENSG00000092758|ENST00000649368|COL9A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.23187255859375	2	455.232502	908.450451	-1.1248	-0.00051204	-0.95074	-0.00043281	-2.0755	-0.00094485	455.23216113101876	28.994	0.4664	28.994	28.647	29.114	0					26	18	2	0	0	0	0.50739	1	9406	9406		44.531	9.3304	1	145810			29603	609;617;1877	20191	20263	29993	29993					-0.007436375882321045
PPGPPGPPGH	10	Unmodified	_PPGPPGPPGH_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3;COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2;COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant;COL9A3|p.P243Lfs*290|1|0.43|ENSG00000092758|chr20:62826243-62826243|C/-|frameshift_variant;ENSG00000092758|ENST00000649368|COL9A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant;ENSG00000092758|ENST00000649368|COL9A3	ENSG00000092758|ENST00000649368|COL9A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.2323303222656	2	455.232502	908.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.347	1	29.347	28.847	29.847	0								0	0	0	0.38459	1	9546	9546		35.201	0	1				29604	609;617;1877	20191	20263	29994	29994					-0.007436375882321045
PPGPWPSF	8	Unmodified	_PPGPWPSF_					0	0	0		ENST00000394361.8_1_16:57596005-57608989:+|nuORF	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.71844482421875	2	442.718696	883.422839	-2.8983	-0.0012831	1.7854	0.00079041	-1.1129	-0.00049272	442.719451121075	20.47	0.17534	20.47	20.383	20.558	0					6	4	2	0	0	0	0.67475	1	5749	5749		37.028	37.028	1	112430			29605	9174	20192	20264	29995	29995					-0.023535408484804066
PPGRGGRI	8	Unmodified	_PPGRGGRI_					0	0	0		DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.2399597167969	2	405.240661	808.46677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.36	1	48.36	47.86	48.86	0								0	0	0	1.7419	1	19225	19225		20.482	0	1				29606	818	20193	20265	29996	29996					0.05487488368510185
PPGVAGPV	8	Unmodified	_PPGVAGPV_					0	0	0		ENST00000223357.7_1_7:44144296-44144407:+|nuORF	ENST00000223357.7_1_7:44144296-44144407:+|nuORF	ENST00000223357.7_1_7:44144296-44144407:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.1988220214844	2	347.200139	692.385725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.599	1	40.599	40.099	41.099	0								0	0	0	1.7419	1	13579	13579		24.504	0	1				29607	8184	20194	20266	29997	29997					0.027227876057509093
PPGVSGALATY	11	Unmodified	_PPGVSGALATY_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7716064453125	2	516.771657	1031.52876	1.5453	0.00079858	-1.1946	-0.00061735	0.3507	0.00018123	516.7709828188582	36.533	0.41552	36.533	36.362	36.778	0					28	8	5	0	0	0	0.47622	1	14214	14214		45.972	10.354	1	396180			29608	1377	20195	20267	29998	29998					0.014257502063401262
PPGVSHGPAV	10	Unmodified	_PPGVSHGPAV_					0	0	0			REV__ENST00000463567.5_1_7:149245928-149246012:-|nuORF	REV__ENST00000463567.5_1_7:149245928-149246012:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.24749755859375	2	459.245609	916.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.696	1	13.696	13.196	14.196	0								0	0	0	0.4201	1	3175	3175		18.324	1.6194	1		+		29609	19398	20196	20268	29999	29999					0.015086315832377295
PPHNLGELVD	10	Unmodified	_PPHNLGELVD_					0	0	0		tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7824096679688	2	545.780013	1089.54547	3.7588	0.0020515	-0.10734	-5.8582E-05	3.6515	0.0019929	545.7801667239918	46.084	1.4738	46.084	45.341	46.815	0					143	64	4	0	0	0	0.56931	1	18369	18369		37.812	6.2817	1	738900			29610	22948	20197	20269	30000	30000					0.004282510923076188
PPITISSK	8	Unmodified	_PPITISSK_					0	0	0		nc|ENSG00000104722|P07197-2|NEFM;NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM	nc|ENSG00000104722|P07197-2|NEFM	nc|ENSG00000104722|P07197-2|NEFM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7527160644531	2	421.752736	841.490919	0.84982	0.00035841	-0.58547	-0.00024692	0.26435	0.00011149	421.7525721188298	33.969	0.28037	33.969	33.865	34.146	0					12	6	2	0	0	0	0.22799	1	13054	13054		124.59	3.9733	1	290410			29611	2303	20198	20270	30001	30001					0.06383284011531032
PPITISSK	8	Unmodified	_PPITISSK_					0	0	0		nc|ENSG00000104722|P07197-2|NEFM;NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM	nc|ENSG00000104722|P07197-2|NEFM	nc|ENSG00000104722|P07197-2|NEFM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.7530212402344	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.802	1	33.802	33.302	34.302	0								0	0	0	1.7419	1	11902	11902		51.335	7.2187	1				29612	2303	20198	20270	30002	30002					0.06383284011531032
PPITISSK	8	Unmodified	_PPITISSK_					0	0	0		nc|ENSG00000104722|P07197-2|NEFM;NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM	nc|ENSG00000104722|P07197-2|NEFM	nc|ENSG00000104722|P07197-2|NEFM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.7526550292969	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.753	1	33.753	33.253	34.253	0								0	0	0	1.7419	1	11879	11879		34.173	0	1				29613	2303	20198	20270	30003	30003					0.06383284011531032
PPITVTSK	8	Unmodified	_PPITVTSK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.75244140625	2	421.752736	841.490919	-1.2217	-0.00051527	0.86972	0.00036681	-0.352	-0.00014846	421.75323815964526	33.808	0.24854	33.808	33.721	33.97	0					11	9	2	0	0	0	0.48092	1	11367	11367		62.107	5.3864	1	54996			29614	1085	20199	20271	30004	30004					0.06383284011519663
PPITVTSK	8	Unmodified	_PPITVTSK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7525634765625	2	421.752736	841.490919	1.0541	0.00044457	-1.059	-0.00044663	-0.0048814	-2.0587E-06	421.75220695977987	33.948	0.25975	33.948	33.842	34.101	0					14	5	3	0	0	0	0.23895	1	12974	12974		134.81	26.723	1	438650			29615	1085	20199	20271	30005	30005					0.06383284011519663
PPKIPKPIED	10	Unmodified	_PPKIPKPIED_					0	0	0			REV__nc|ENSG00000120896|O60504-2|SORBS3	REV__nc|ENSG00000120896|O60504-2|SORBS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3302001953125	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.962	1	50.962	50.462	51.462	0								0	0	0	0.41253	1	20013	20013		26.693	6.6961	1		+		29616	14302	20200	20272	30006	30006					0.0881915819995811
PPKLQKMA	8	Unmodified	_PPKLQKMA_					0	0	0		ENSG00000162989|ENST00000295101|KCNJ3	ENSG00000162989|ENST00000295101|KCNJ3	ENSG00000162989|ENST00000295101|KCNJ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7730407714844	2	456.770406	911.526258	2.4875	0.0011362	1.9085	0.00087174	4.396	0.002008	456.7711130790428	50.054	0.18288	50.054	49.886	50.069	0					13	8	2	0	0	0	0.8006	1	19740	19740		20.482	1.1219	1	38522			29617	5518	20201	20273	30007	30007					0.06695623267671635
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENSG00000142661|ENST00000374434|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.7458801269531	2	412.746111	823.477669	-0.70581	-0.00029132	0.58183	0.00024015	-0.12399	-5.1175E-05	412.74622924331203	49.548	0.3969	49.548	49.418	49.815	0					31	16	3	0	0	0	0.79293	1	17857	17857		15.636	15.636	1	368360			29618	4506	20202	20274	30008	30008					0.05886890742817741
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENSG00000142661|ENST00000374434|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.74603271484375	2	412.746111	823.477669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.049	1	49.049	48.549	49.549	0								0	0	0	1.7419	1	19443	19443		9.4706	1.2393	1				29619	4506	20202	20274	30009	30009					0.05886890742817741
PPLAAGGA	8	Unmodified	_PPLAAGGA_					0	0	0			REV__ENSG00000126461|ENST00000360565|SCAF1	REV__ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.1842956542969	2	327.184489	652.354425	-0.66756	-0.00021842	0.57378	0.00018773	-0.093782	-3.0684E-05	327.184648124011	15.361	0.71639	15.361	15.156	15.872	0					45	25	2	0	0	0	0.77013	1	3461	3461		24.504	0	1	201750	+		29620	14467	20203	20275	30010	30010					0.014342145716682353
PPLDMYSY	8	Unmodified	_PPLDMYSY_					0	0	0			REV__tr|U7SQP7|U7SQP7_FUSNULipopolysaccharidecholinephosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01651PE=4SV=1	REV__tr|U7SQP7|U7SQP7_FUSNULipopolysaccharidecholinephosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01651PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2234191894531	2	493.220411	984.426269	2.7603	0.0013614	4.0166	0.0019811	6.7769	0.0033425	493.2221403508968	46.746	0.14635	46.746	46.702	46.849	0					9	7	2	0	0	0	0.68754	1	18699	18699		35.201	3.2459	1	33571	+		29621	21837	20204	20276	30011	30011					-0.06656658856786635
PPLGAPWLPV	10	Unmodified	_PPLGAPWLPV_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.8056030273438	2	523.805303	1045.59605	-0.61967	-0.00032459	1.5986	0.00083735	0.97891	0.00051276	523.8062040820388	50.042	0.27151	50.042	49.904	50.175	0					21	16	2	0	0	0	0.6796	1	16409	16409		19.36	9.0947	1	69656			29622	5357	20205	20277	30012	30012					0.07507825207926544
PPLLLGTT	8	Unmodified	_PPLLLGTT_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.2485046386719	2	406.249829	810.485105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.261	1	52.261	51.761	52.761	0								0	0	0	1.7419	1	16061	16061		21.702	2.3424	1		+		29623	17087	20206	20278	30013	30013					0.07228185499855044
PPLLTLAS	8	Unmodified	_PPLLTLAS_					0	0	0			REV__ENSG00000152784|ENST00000415738|PRDM8	REV__ENSG00000152784|ENST00000415738|PRDM8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.2484436035156	2	406.249829	810.485105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.939	1	52.939	52.439	53.439	0								0	0	0	1.7419	1	19436	19436		13.775	0	1		+		29624	15519	20207	20279	30014	30014					0.07228185499843676
PPLLTSSK	8	Unmodified	_PPLLTSSK_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.75274658203125	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.012	1	34.012	33.512	34.512	0								0	0	0	1.7419	1	12632	12632		68.787	0	1				29625	6806	20208	20280	30015	30015					0.06383284011531032
PPLPCVGAAPV	11	Unmodified	_PPLPCVGAAPV_					0	0	0			REV__ENST00000308027.6_1_17:6941606-6941711:+|nuORF	REV__ENST00000308027.6_1_17:6941606-6941711:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7829895019531	2	510.78097	1019.54739	0.3607	0.00018424	3.0462	0.0015559	3.4069	0.0017402	510.782948379468	24.72	0.21218	24.72	24.661	24.873	0					5	4	2	0	0	0	0.73592	1	8722	8722		24.203	2.2429	1	107730	+		29626	18252	20209	20281	30016	30016					0.0383958857653397
PPLSLQGPRGR	11	Unmodified	_PPLSLQGPRGR_					0	0	0			REV__ENST00000609803.2_1_12:46121133-46121556:-|nuORF	REV__ENST00000609803.2_1_12:46121133-46121556:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.3438720703125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.122	1	51.122	50.622	51.622	0								0	0	0	0.45674	1	15305	15305		16.717	1.0756	1		+		29627	20635	20210	20282	30017	30017					0.09147016757151505
PPLSRPVY	8	Unmodified	_PPLSRPVY_					0	0	0		ENST00000586099.1_1_17:33687214-33689981:-|nuORF;SLFN11|p.G503Afs*15|1|0.2|ENSG00000172716|chr17:35353750-35353750|C/-|frameshift_variant;ENSG00000172716|ENST00000685675|SLFN11	ENST00000586099.1_1_17:33687214-33689981:-|nuORF	ENST00000586099.1_1_17:33687214-33689981:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.76580810546875	2	464.766178	927.517802	-0.68749	-0.00031952	0.31594	0.00014684	-0.37155	-0.00017268	464.76639074614536	38.554	0.4679	38.554	38.455	38.923	0					39	18	4	0	0	0	0.75243	1	14796	14796		26.796	1.3459	1	1761600			29628	6375	20211	20283	30018	30018					0.051143926227155134
PPLSVPPPISP	11	Unmodified	_PPLSVPPPISP_					0	0	0		nc|ENSG00000175727|Q9HAP2-5|MLXIP	nc|ENSG00000175727|Q9HAP2-5|MLXIP	nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8211669921875	2	550.82115	1099.62775	1.816	0.0010003	-1.0916	-0.00060127	0.72437	0.000399	550.8206048779351	39.743	2.9042	39.743	39.202	42.106	0					108	67	2	0	0	0	0.47622	1	16154	16154		45.972	3.5761	1	195410			29629	11655	20212	20284	30019	30019					0.08191773171233763
PPLTEYFLN	9	Unmodified	_PPLTEYFLN_					0	0	0		USP15|p.R760Kfs*4|2|0.23|ENSG00000135655|chr12:62391853-62391854|-/A|frameshift_variant;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;USP15|p.P943Lfs*17|1|0.43|ENSG00000135655|chr12:62404250-62404250|T/-|frameshift_variant;ENSG00000135655|ENST00000280377|USP15;ENST00000549268.1_1_12:62768286-62777812:+|nuORF;USP15|p.P403Tfs*14|1|0.17|ENSG00000135655|chr12:62383950-62383951|-/A|frameshift_variant;USP15|p.E473Nfs*8|1|0.1|ENSG00000135655|chr12:62384240-62384240|A/-|frameshift_variant	USP15|p.R760Kfs*4|2|0.23|ENSG00000135655|chr12:62391853-62391854|-/A|frameshift_variant	USP15|p.R760Kfs*4|2|0.23|ENSG00000135655|chr12:62391853-62391854|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2835083007812	2	547.281857	1092.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.552	1	12.552	12.052	13.052	0								0	0	0	0.3368	1	2666	2666		27.882	2.4321	1				29630	4011	20213	20285	30020	30020					0.006589208661580415
PPLTLSSPMS	10	Unmodified	_PPLTLSSPMS_					0	0	0			REV__nc|ENSG00000106410|O60393-2|NOBOX	REV__nc|ENSG00000106410|O60393-2|NOBOX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2655639648438	2	515.267893	1028.52123	1.1892	0.00061274	-4.1492	-0.0021379	-2.96	-0.0015252	515.2656333736182	45.63	0.091515	45.63	45.555	45.647	0					8	5	2	0	0	0	0.58896	1	16953	16953		35.618	0	1	32753	+		29631	13824	20214	20286	30021	30021					0.00811274614420654
PPPAAAMDFS	10	Unmodified	_PPPAAAMDFS_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4;nc|ENSG00000119698|Q6NUP7-2|PPP4R4;ENST00000555690.5_1_14:94640802-94696957:+|nuORF;PPP4R4|p.T186Nfs*8|1|0.1|ENSG00000119698|chr14:94233689-94233690|-/A|frameshift_variant;PPP4R4|p.S250Vfs*7|1|0.39|ENSG00000119698|chr14:94237577-94237577|A/-|frameshift_variant	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2308349609375	2	502.23131	1002.44807	1.1479	0.00057653	-1.7151	-0.00086139	-0.56719	-0.00028486	502.2306310272883	39.828	0.54214	39.828	39.686	40.229	0					44	12	5	0	0	0	0.56015	1	15927	15927		38.806	3.6541	1	7449300			29632	3131	20215	20287	30022	30022					-0.05305854108223684
PPPRARGG	8	Unmodified	_PPPRARGG_					0	0	0			REV__ENST00000497866.5_1_1:44444922-44446927:+|nuORF	REV__ENST00000497866.5_1_1:44444922-44446927:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.2326354980469	2	404.232836	806.45112	-0.74386	-0.00030069	0.8926	0.00036082	0.14874	6.0127E-05	404.2331099687203	49.248	0.57335	49.248	49.033	49.606	0					56	33	3	0	0	0	0.8006	1	15400	15400		20.482	20.482	1	951030	+		29633	19790	20216	20288	30023	30023					0.040152018514731935
PPPSLSSHGS	10	Unmodified	_PPPSLSSHGS_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2	nc|ENSG00000134644|Q14671-2|PUM1;ENSG00000055917|ENST00000361078|PUM2	ENSG00000055917|ENST00000361078|PUM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2371520996094	2	483.237981	964.461409	-2.9191	-0.0014106	1.3422	0.00064859	-1.577	-0.00076205	483.2384517143248	22.718	0.18952	22.718	22.635	22.825	0					6	4	2	0	0	0	0.65213	1	6811	6811		27.882	1.1893	1	99080			29634	1283;3933	20217	20289	30024	30024					-0.022242800046115008
PPPSTNPW	8	Unmodified	_PPPSTNPW_					0	0	0			REV__ENSG00000173714|ENST00000311378|WFIKKN2	REV__ENSG00000173714|ENST00000311378|WFIKKN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.217041015625	2	448.21906	894.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.283	1	15.283	14.783	15.783	0								0	0	0	1.7419	1	3393	3393		31.955	3.7006	1		+		29635	16529	20218	20290	30025	30025					-0.027867461994333098
PPQFQNLLL	9	Unmodified	_PPQFQNLLL_					0	0	0		L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|205|1|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|205|1|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|205|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.3040771484375	2	535.305667	1068.59678	-0.60754	-0.00032522	-2.0766	-0.0011116	-2.6842	-0.0014369	535.3046774086566	36.824	0.27673	36.824	36.693	36.97	0					21	15	2	0	0	0	0.43426	1	12472	12472		38.806	0	1	58649			29636	11299	20219	20291	30026	30026					0.06522619856991696
PPQHAVKLML	10	Unmodified	_PPQHAVKLML_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3307495117188	2	567.328619	1132.64269	3.4714	0.0019694	-0.2761	-0.00015664	3.1953	0.0018128	567.3282896192472	52.105	1.2348	52.105	51.799	53.034	0					176	74	3	0	0	0	0.58896	1	20398	20398		35.618	3.6634	1	343240	+		29637	14016	20220	20292	30027	30027					0.08166941767581193
PPQNLTVTV	9	Unmodified	_PPQNLTVTV_					0	0	0		nc|ENSG00000168995|Q9Y286-2|SIGLEC7;ENSG00000168995|ENST00000317643|SIGLEC7	nc|ENSG00000168995|Q9Y286-2|SIGLEC7	nc|ENSG00000168995|Q9Y286-2|SIGLEC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7740478515625	2	484.7742	967.533846	-0.6411	-0.00031079	0.35277	0.00017102	-0.28833	-0.00013977	484.7743167884419	38.529	0.64595	38.529	38.404	39.05	0					49	22	3	0	0	0	0.13519	1	15096	15096		71.296	2.5089	1	8572700			29638	6138	20221	20293	30028	30028					0.04878054068956317
PPQPARPL	8	Unmodified	_PPQPARPL_					0	0	0			REV__ENSG00000137218|ENST00000373018|FRS3	REV__ENSG00000137218|ENST00000373018|FRS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.25823974609375	2	438.25852	874.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.844	1	34.844	34.344	35.344	0								0	0	0	1.7419	1	11409	11409		26.796	0	1		+		29639	14910	20222	20294	30029	30029					0.060215258255084336
PPQPRARATAL	11	Unmodified	_PPQPRARATAL_					0	0	0			REV__ENSG00000269113|ENST00000606738|TRABD2B	REV__ENSG00000269113|ENST00000606738|TRABD2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.3435668945312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.238	1	53.238	52.738	53.738	0								0	0	0	0.4303	1	16262	16262		30.318	1.1477	1		+		29640	17802	20223	20295	30030	30030					0.09147016757151505
PPRAGEARPGP	11	Unmodified	_PPRAGEARPGP_					0	0	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.86981201171875	3	368.868473	1103.58359	3.1829	0.0011741	0.10253	3.7819E-05	3.2855	0.0012119	368.868594411106	40.031	2.091	40.031	39.543	41.634	0					65	46	3	0	0	0	0.77686	1	15960	15960		17.833	17.833	1	92014			29641	5397	20224	20296	30031	30031					0.035941817975981394
PPRAGGPR	8	Unmodified	_PPRAGGPR_					0	0	0		ENST00000164227.9_1_19:45263103-45263223:+|nuORF	ENST00000164227.9_1_19:45263103-45263223:+|nuORF	ENST00000164227.9_1_19:45263103-45263223:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.2328796386719	2	404.232836	806.45112	0.4115	0.00016634	-0.32947	-0.00013318	0.082025	3.3157E-05	404.2326332010955	49.486	0.95745	49.486	49.222	50.179	0					79	41	4	0	0	0	0.79882	1	18586	18586		19.36	0	1	2633500			29642	8146	20225	20297	30032	30032					0.04015201851461825
PPRARAGG	8	Unmodified	_PPRARAGG_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.224853515625	2	391.225011	780.435469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.291	1	43.291	42.791	43.791	0								0	0	0	1.7419	1	13676	13676		33.516	0	1				29643	4152	20226	20298	30033	30033					0.03646915334422829
PPRARAGG	8	Unmodified	_PPRARAGG_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2250061035156	2	391.225011	780.435469	0.33996	0.000133	-0.20136	-7.8776E-05	0.13861	5.4227E-05	391.2247871165222	42.351	1.3193	42.351	41.916	43.235	0					89	64	3	0	0	0	0.79176	1	16570	16570		21.702	1.2205	1	207150			29644	4152	20226	20298	30034	30034					0.03646915334422829
PPRARAGG	8	Unmodified	_PPRARAGG_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2253723144531	2	391.225011	780.435469	0.34168	0.00013367	-0.16073	-6.288E-05	0.18095	7.0793E-05	391.2248343886734	43.882	2.0593	43.882	43.246	45.306	0					281	113	3	0	0	0	0.7914	1	17354	17354		14.664	14.664	1	459120			29645	4152	20226	20298	30035	30035					0.03646915334422829
PPRARAGG	8	Unmodified	_PPRARAGG_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.2253723144531	2	391.225011	780.435469	0.47511	0.00018587	-0.39742	-0.00015548	0.077688	3.0394E-05	391.2247545235068	43.634	2.4442	43.634	43.211	45.655	0					235	95	4	0	0	0	0.74117	1	17908	17908		28.254	1.4582	1	1576700			29646	4152	20226	20298	30036	30036					0.03646915334422829
PPRSPLVY	8	Unmodified	_PPRSPLVY_					0	0	0			REV__ENST00000478776.1_1_9:2646370-2647636:+|nuORF	REV__ENST00000478776.1_1_9:2646370-2647636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7658996582031	2	464.766178	927.517802	0.68429	0.00031804	-0.86612	-0.00040254	-0.18183	-8.4509E-05	464.765681373782	38.534	0.51208	38.534	38.415	38.928	0					49	18	4	0	0	0	0.7126	1	15263	15263		31.955	5.1588	1	2720900	+		29647	19568	20227	20299	30037	30037					0.051143926227155134
PPSALRPKPS	10	Unmodified	_PPSALRPKPS_					0	0	0		LRFN2|p.P647L|1|0.29|ENSG00000156564|chr6:40392373-40392373|G/A|missense_variant	LRFN2|p.P647L|1|0.29|ENSG00000156564|chr6:40392373-40392373|G/A|missense_variant	LRFN2|p.P647L|1|0.29|ENSG00000156564|chr6:40392373-40392373|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.3082275390625	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.707	1	36.707	36.207	37.207	0								0	0	0	0.4162	1	13866	13866		25.574	7.2496	1				29648	11321	20228	20300	30038	30038					0.08057138088497595
PPSELQIGLK	10	Unmodified	_PPSELQIGLK_					0	0	0		ENST00000568857.5_3_16:84164853-84177949:-|nuORF	ENST00000568857.5_3_16:84164853-84177949:-|nuORF	ENST00000568857.5_3_16:84164853-84177949:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.2139892578125	3	361.213246	1080.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.834	1	45.834	45.334	46.334	0								0	0	0	0.4201	1	18363	18363		15.333	2.9003	1				29649	10777	20229	20301	30039	30039					0.08082585165857381
PPSKIKELQR	10	Unmodified	_PPSKIKELQR_					0	0	0			REV__ENST00000496567.5_1_9:97782011-97782122:+|nuORF	REV__ENST00000496567.5_1_9:97782011-97782122:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.245849609375	3	399.243429	1194.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.269	1	48.269	47.769	48.769	0								0	0	0	0.4201	1	19196	19196		20.03	2.5625	1		+		29650	19774	20230	20302	30040	30040					0.11889054214134376
PPSLPLGT	8	Unmodified	_PPSLPLGT_					0	0	0		ENST00000337620.8_1_7:26241072-26246069:+|nuORF	ENST00000337620.8_1_7:26241072-26246069:+|nuORF	ENST00000337620.8_1_7:26241072-26246069:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.2249755859375	2	391.226354	780.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.161	1	44.161	43.661	44.661	0								0	0	0	1.7419	1	15208	15208		33.516	0	1				29651	8707	20231	20303	30041	30041					0.03915325948719328
PPSLPWDSGA	10	Unmodified	_PPSLPWDSGA_					0	0	0			REV__ENST00000573366.5_1_17:4870348-4870435:-|nuORF	REV__ENST00000573366.5_1_17:4870348-4870435:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7496948242188	2	513.748182	1025.48181	3.181	0.0016342	-0.046485	-2.3882E-05	3.1345	0.0016104	513.7482083355103	26.426	0.61954	26.426	26.265	26.885	0					25	12	3	0	0	0	0.39566	1	9346	9346		56.721	56.721	1	1771900	+		29652	20397	20232	20304	30042	30042					-0.02991109344816323
PPSSSPAGR	9	Unmodified	_PPSSSPAGR_					0	0	0		ENST00000309909.9_2_12:117466288-117466417:+|nuORF	ENST00000309909.9_2_12:117466288-117466417:+|nuORF	ENST00000309909.9_2_12:117466288-117466417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.2190246582031	2	428.219591	854.42463	-0.95829	-0.00041036	0.56886	0.0002436	-0.38943	-0.00016676	428.2198971277462	16.108	0.26777	16.108	15.928	16.196	0					15	9	2	0	0	0	0.41113	1	3804	3804		40.778	0	1	54510			29653	8542	20233	20305	30043	30043					-0.008405318305221954
PPTVPPAVST	10	Unmodified	_PPTVPPAVST_					0	0	0			REV__ENST00000476266.5_1_19:40748442-40748610:-|nuORF	REV__ENST00000476266.5_1_19:40748442-40748610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2763671875	2	483.26875	964.522947	0.87849	0.00042455	-0.30782	-0.00014876	0.57067	0.00027579	483.26795271059547	30.633	0.5061	30.633	30.325	30.831	0					33	10	5	0	0	0	0.66699	1	11279	11279		14.865	0	1	2568500	+		29654	19535	20234	20306	30044	30044					0.03926651694678185
PPVAVPGG	8	Unmodified	_PPVAVPGG_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant;ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	347.1983947753906	2	347.200139	692.385725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.003	1	42.003	41.503	42.503	0								0	0	0	1.7419	1	14731	14731		16.705	6.5202	1				29655	1238	20235	20307	30045	30045					0.02722787605762278
PPVGPIGG	8	Unmodified	_PPVGPIGG_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.199462890625	2	347.200139	692.385725	0.50109	0.00017398	2.896	0.0010055	3.3971	0.0011795	347.20176428076763	42.283	0.79099	42.283	42.037	42.828	0					67	40	2	0	0	0	0.77013	1	16127	16127		24.504	0	1	469600			29656	1032	20236	20308	30046	30046					0.02722787605762278
PPVKTIDVPL	10	Unmodified	_PPVKTIDVPL_					0	0	0			REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.830322265625	2	539.828975	1077.6434	0.9305	0.00050231	-0.14294	-7.7165E-05	0.78756	0.00042515	539.828751230173	28.992	0.16354	28.992	28.904	29.068	0					11	6	2	0	0	0	0.5276	1	9095	9095		30.318	0	1	88344	+		29657	14643	20237	20309	30047	30047					0.10768059688280118
PPVLDTAI	8	Unmodified	_PPVLDTAI_					0	0	0		nc|ENSG00000203757|Q8NGY3|OR6K3;ENSG00000203757|ENST00000368145|OR6K3;OR6K3|p.L275V|1|0.35|ENSG00000203757|chr1:158717341-158717341|A/C|missense_variant	nc|ENSG00000203757|Q8NGY3|OR6K3	nc|ENSG00000203757|Q8NGY3|OR6K3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.23809814453125	2	413.239461	824.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.232	1	44.232	43.732	44.732	0								0	0	0	1.7419	1	17723	17723		28.254	0	1				29658	7657	20238	20310	30048	30048					0.04511595120175116
PPVPVAAS	8	Unmodified	_PPVPVAAS_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.2116394042969	2	369.213246	736.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.272	1	43.272	42.772	43.772	0								0	0	0	1.7419	1	14175	14175		29.842	1.5873	1		+		29659	16142	20239	20311	30049	30049					0.033190567772294344
PPVPVAAS	8	Unmodified	_PPVPVAAS_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.21197509765625	2	369.213246	736.41194	-2.0874	-0.00077068	-0.96382	-0.00035586	-3.0512	-0.0011265	369.2128185876418	42.662	0.54476	42.662	42.379	42.924	0					53	32	2	0	0	0	0.79176	1	14898	14898		21.702	0	1	75705	+		29660	16142	20239	20311	30050	30050					0.033190567772294344
PPVQQLRDRL	10	Unmodified	_PPVQQLRDRL_					0	0	0		ENST00000484848.5_1_10:102255105-102258991:-|nuORF;nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B	ENST00000484848.5_1_10:102255105-102258991:-|nuORF	ENST00000484848.5_1_10:102255105-102258991:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.357421875	2	611.356754	1220.69895	-0.10562	-6.4572E-05	0.64771	0.00039598	0.54209	0.00033141	611.3570460138175	53.592	0.76965	53.592	53.26	54.03	0					100	49	3	0	0	0	0.74461	1	16347	16347		14.137	0	1	197750			29661	1549	20240	20312	30051	30051					0.09743285928607293
PPVSSRAR	8	Unmodified	_PPVSSRAR_					0	0	0		ENST00000568542.5_1_16:2255373-2256424:+|nuORF	ENST00000568542.5_1_16:2255373-2256424:+|nuORF	ENST00000568542.5_1_16:2255373-2256424:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2512512207031	2	435.251226	868.487899	0.83091	0.00036166	-0.63891	-0.00027809	0.192	8.3567E-05	435.2508543198939	44.938	1.1598	44.938	44.628	45.787	0					101	66	2	0	0	0	0.74117	1	17387	17387		28.254	1.4582	1	228920			29662	10774	20241	20313	30052	30052					0.04839453677379879
PPVVLYRN	8	Unmodified	_PPVVLYRN_					0	0	0			REV__FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant	REV__FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2773132324219	2	479.279452	956.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.858	1	46.858	46.358	47.358	0								0	0	0	1.7419	1	14926	14926		20.482	1.3783	1		+		29663	16851	20242	20314	30053	30053					0.06434081514032641
PPYFTALPG	9	Unmodified	_PPYFTALPG_					0	0	0		IGSF9B|p.V424A|1|0.41|ENSG00000080854|chr11:133931550-133931550|A/G|missense_variant	IGSF9B|p.V424A|1|0.41|ENSG00000080854|chr11:133931550-133931550|A/G|missense_variant	IGSF9B|p.V424A|1|0.41|ENSG00000080854|chr11:133931550-133931550|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7516784667969	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.678	1	19.678	19.178	20.178	0								0	0	0	0.30835	1	5373	5373		33.516	0	1				29664	11220	20243	20315	30054	30054					0.008632840115183171
PPYLANFY	8	Unmodified	_PPYLANFY_					0	0	0		nc|nan|Q6UX73|C16orf89	nc|nan|Q6UX73|C16orf89	nc|nan|Q6UX73|C16orf89	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.74359130859375	2	492.744911	983.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.353	1	12.353	11.853	12.853	0								0	0	0	1.7419	1	2757	2757		28.254	0.37203	1				29665	11838	20244	20316	30055	30055					-0.01713002505539407
PPYPLPGPG	9	Unmodified	_PPYPLPGPG_					0	0	0		nc|ENSG00000137404|Q8IXM6-6|NRM	REV__ENST00000269300.8_1_17:8812418-8868918:-|nuORF	REV__ENST00000269300.8_1_17:8812418-8868918:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.73968505859375	2	447.739628	893.464704	-0.43551	-0.00019499	0.4268	0.0001911	-0.0087055	-3.8978E-06	447.739759428212	12.657	0.12352	12.657	12.563	12.686	0					9	4	3	0	0	0	0.61124	1	2714	2714		14.664	0	1	431730			29666	11544	20245	20317	30056	30056					0.013710148400491562
PPYRSLVSP	9	Unmodified	_PPYRSLVSP_					0	0	0			REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2821960449219	2	508.282192	1014.54983	1.317	0.00066942	-1.2825	-0.00065188	0.034507	1.7539E-05	508.2816283226992	26.288	0.51875	26.288	26.034	26.553	0					26	10	4	0	0	0	0.1115	1	9281	9281		76.774	1.7308	1	1680100	+		29667	16326	20246	20318	30057	30057					0.043137603058426066
PPYVTYNK	8	Unmodified	_PPYVTYNK_					0	0	0			REV__tr|U7STX1|U7STX1_FUSNUUracil-DNAglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ungPE=3SV=1	REV__tr|U7STX1|U7STX1_FUSNUUracil-DNAglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ungPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.257080078125	2	491.255643	980.496732	2.693	0.0013229	-0.48926	-0.00024035	2.2037	0.0010826	491.2553434964307	51.906	0.29501	51.906	51.762	52.057	0					42	17	3	0	0	0	0.79882	1	20220	20220		19.36	1.0356	1	616490	+		29668	21944	20247	20319	30058	30058					0.005703825231876181
PQALTPPPCA	10	Unmodified	_PQALTPPPCA_					0	0	0			REV__ENST00000418309.1_1_7:156396604-156398412:-|nuORF	REV__ENST00000418309.1_1_7:156396604-156398412:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7540283203125	2	497.754953	993.495352	-0.72173	-0.00035924	-0.45193	-0.00022495	-1.1737	-0.00058419	497.75452488715604	11.595	0.15461	11.595	11.495	11.65	0					7	4	2	0	0	0	0.72365	1	2409	2409		18.262	0.89712	1	251720	+		29669	19051	20248	20320	30059	30059					-0.0016557483722863253
PQAWLGSWG	9	Unmodified	_PQAWLGSWG_					0	0	0		ENST00000460830.1_1_9:140006993-140007673:-|nuORF	ENST00000460830.1_1_9:140006993-140007673:-|nuORF	ENST00000460830.1_1_9:140006993-140007673:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2456970214844	2	501.245609	1000.47667	-0.57612	-0.00028878	0.75952	0.0003807	0.18339	9.1925E-05	501.24590015267154	13.097	0.23316	13.097	13.001	13.234	0					15	4	5	0	0	0	0.47038	1	3112	3112		35.618	5.3006	1	2054300			29670	9724	20249	20321	30060	30060					-0.02355368416760939
PQCGTYGLYT	10	Unmodified	_PQCGTYGLYT_					0	0	0		ENSG00000182326|ENST00000360817|C1S;ENST00000443875.5_1_12:7174318-7177952:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.16802978515625	3	368.167308	1101.4801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.23	1	47.23	46.73	47.73	0								0	0	0	0.38879	1	18874	18874		33.922	5.3449	1				29671	6892	20250	20322	30061	30061					-0.06658486425089905
PQETLNQINK	10	Unmodified	_PQETLNQINK_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.8193359375	2	592.817127	1183.6197	3.1758	0.0018826	0.48211	0.00028581	3.6579	0.0021685	592.817619985298	38.535	0.20614	38.535	38.421	38.627	0					11	4	3	0	0	0	0.065649	1	15164	15164		104.06	18.896	1	272210			29672	3396	20251	20323	30062	30062					0.035235941837981954
PQGKTLRNG	9	Unmodified	_PQGKTLRNG_					0	0	0		ENST00000530702.1_2_11:10827460-10828835:-|nuORF;ENST00000525995.1_1_11:10827460-10829842:-|nuORF;ENST00000526148.5_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7762451171875	2	485.775065	969.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.356	1	17.356	16.856	17.856	0								0	0	0	0.36359	1	5141	5141		20.947	1.587	1				29673	10367	20252	20324	30063	30063					0.04959107877562019
PQGNVSVIY	9	Unmodified	_PQGNVSVIY_					0	0	0			REV__ENST00000522335.5_1_8:144462155-144464818:+|nuORF	REV__ENST00000522335.5_1_8:144462155-144464818:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.75830078125	2	488.758549	975.502546	-0.077309	-3.7785E-05	0.33372	0.00016311	0.25641	0.00012532	488.758610897951	35.576	0.78314	35.576	35.224	36.007	0					46	22	3	0	0	0	0.41113	1	13939	13939		40.778	5.1599	1	224320	+		29674	15676	20253	20325	30064	30064					0.013814810348549145
PQGRHKTEV	9	Unmodified	_PQGRHKTEV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.286865234375	2	526.285797	1050.55704	1.1989	0.00063098	1.2254	0.00064489	2.4243	0.0012759	526.2864512833739	35.664	0.16563	35.664	35.597	35.762	0					9	6	2	0	0	0	0.45358	1	12717	12717		37.159	0	1	98930			29675	5134;23079	20254	20326	30065	30065					0.03378492906290376
PQGTGPFL	8	Unmodified	_PQGTGPFL_					0	0	0		ENST00000379619.5_1_2:28636364-28636718:+|nuORF	ENST00000379619.5_1_2:28636364-28636718:+|nuORF	ENST00000379619.5_1_2:28636364-28636718:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.716064453125	2	408.716153	815.417754	-0.52848	-0.000216	0.49332	0.00020163	-0.035163	-1.4372E-05	408.71632715855554	34.951	0.26681	34.951	34.83	35.097	0					9	5	2	0	0	0	0.6282	1	13455	13455		44.531	0	1	99631			29676	9085	20255	20327	30066	30066					0.002661552888866936
PQGYAATI	8	Unmodified	_PQGYAATI_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	410.7137145996094	2	410.713611	819.412668	-1.4273	-0.0005862	2.3354	0.00095918	0.90813	0.00037298	410.714388789142	42.551	0.13966	42.551	42.532	42.672	0					12	8	2	0	0	0	0.77246	1	14018	14018		24.203	5.8783	1	69964	+		29677	13350	20256	20328	30067	30067					-0.004261485737060866
PQLAAAEQYIQ	11	Unmodified	_PQLAAAEQYIQ_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.2149658203125	3	411.215427	1230.62445	0.056807	2.336E-05	-0.95032	-0.00039079	-0.89351	-0.00036743	411.2150022768357	12.992	0.45955	12.992	12.854	13.313	0					21	10	4	0	0	0	0.50799	1	3030	3030		43.651	0.78652	1	792130	+		29678	14716	20257	20329	30068	30068					0.018364783265724327
PQLAAAEQYIQ	11	Unmodified	_PQLAAAEQYIQ_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.21539306640625	3	411.215427	1230.62445	0.11178	4.5967E-05	-0.72401	-0.00029772	-0.61222	-0.00025176	411.21520401329957	12.752	0.13004	12.752	12.674	12.804	0					14	7	3	0	0	0	0.42065	1	2486	2486		50.034	1.432	1	85715	+		29679	14716	20257	20329	30069	30069					0.018364783265724327
PQLAAAEQYIQ	11	Unmodified	_PQLAAAEQYIQ_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-2|TMTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.21466064453125	3	411.215427	1230.62445	-0.46362	-0.00019065	-0.68832	-0.00028305	-1.1519	-0.0004737	411.21520608092044	12.938	0.48448	12.938	12.79	13.275	0					24	10	4	0	0	0	0.60833	1	2850	2850		36.318	1.1656	1	1113200	+		29680	14716	20257	20329	30070	30070					0.018364783265724327
PQLISPVGQS	10	Unmodified	_PQLISPVGQS_					0	0	0			REV__ENST00000571776.1_1_16:74694828-74700696:-|nuORF	REV__ENST00000571776.1_1_16:74694828-74700696:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2852172851562	2	513.284931	1024.55531	-0.24984	-0.00012824	0.91981	0.00047213	0.66997	0.00034389	513.2853672196942	39.295	0.31977	39.295	39.209	39.529	0					42	18	3	0	0	0	0.46128	1	13208	13208		49.536	3.0793	1	488530	+		29681	16257	20258	20330	30071	30071					0.04401439097682669
PQLLKEAGYT	10	Unmodified	_PQLLKEAGYT_					0	0	0		nc|ENSG00000113273|P15848-2|ARSB;ENSG00000113273|ENST00000264914|ARSB	nc|ENSG00000113273|P15848-2|ARSB	nc|ENSG00000113273|P15848-2|ARSB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.3067626953125	2	560.305864	1118.59717	1.3355	0.00074831	0.70919	0.00039736	2.0447	0.0011457	560.8079760006273	44.886	0.25848	44.886	44.773	45.031	0					14	10	2	0	0	0	0.58308	1	17962	17962		31.53	16.665	1	127280			29682	2790	20259	20331	30072	30072					0.04261994786179457
PQLLLLKLR	9	Unmodified	_PQLLLLKLR_					0	0	0			REV__ENST00000555988.1_2_14:75356010-75360059:+|nuORF	REV__ENST00000555988.1_2_14:75356010-75360059:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	365.2525329589844	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.902	1	31.902	31.402	32.402	0								0	0	0	0.40728	1	11036	11036		8.6937	0	1		+		29683	20248	20260	20332	30073	30073					0.19564037950112834
PQLLRADTP	9	Unmodified	_PQLLRADTP_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7850036621094	2	505.785099	1009.55564	1.2445	0.00062945	-1.2563	-0.00063541	-0.01178	-5.9579E-06	505.7845038678024	31.166	0.31012	31.166	31.059	31.37	0					13	6	3	0	0	0	0.2873	1	11632	11632		51.335	7.2187	1	833480	+		29684	17092	20261	20333	30074	30074					0.05124858817509903
PQLQSPMY	8	Unmodified	_PQLQSPMY_					0	0	0		ENSG00000150269|ENST00000279791|OR5M9	ENSG00000150269|ENST00000279791|OR5M9	ENSG00000150269|ENST00000279791|OR5M9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2334899902344	2	482.233853	962.453153	-0.10418	-5.0238E-05	-0.57494	-0.00027726	-0.67912	-0.00032749	482.23366469033533	40.469	0.24627	40.469	40.348	40.595	0					17	9	2	0	0	0	0.7126	1	15421	15421		31.955	0	1	114160			29685	4920	20262	20334	30075	30075					-0.029575502456054892
PQLREENDL	9	Unmodified	_PQLREENDL_					0	0	0		nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	nc|ENSG00000154767|Q01831-2|XPC	nc|ENSG00000154767|Q01831-2|XPC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	371.8566589355469	3	371.85601	1112.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.964	1	13.964	13.464	14.464	0								0	0	0	0.28996	1	2950	2950		36.447	3.6343	1				29686	5102	20263	20335	30076	30076					-0.005569542586727039
PQLVMRHG	8	Unmodified	_PQLVMRHG_					0	0	0			REV__MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	REV__MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.25543212890625	2	469.255454	936.496355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.932	1	13.932	13.432	14.432	0								0	0	0	1.7419	1	2937	2937		13.775	0	1		+		29687	16552	20264	20336	30077	30077					0.025566843223487012
PQNHRRKQ	8	Unmodified	_PQNHRRKQ_					0	0	0		ENST00000595125.5_1_19:50432043-50432519:+|nuORF	ENST00000595125.5_1_19:50432043-50432519:+|nuORF	ENST00000595125.5_1_19:50432043-50432519:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2957763671875	2	532.29703	1062.57951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.047	1	12.047	11.547	12.547	0								0	0	0	1.7419	1	2472	2472		28.254	3.7351	1				29688	10996	20265	20337	30078	30078					0.05072137094543905
PQNQELTY	8	Unmodified	_PQNQELTY_					0	0	0			REV__ENST00000261609.11_1_15:28538126-28544646:-|nuORF	REV__ENST00000261609.11_1_15:28538126-28544646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.73870849609375	2	496.737814	991.461075	0.54824	0.00027233	0.023504	1.1675E-05	0.57175	0.00028401	496.73769387743283	34.238	0.32222	34.238	34.077	34.4	0					14	8	3	0	0	0	0.49216	1	12710	12710		60.972	6.1956	1	183690	+		29689	18018	20266	20338	30079	30079					-0.03499699724488892
PQNQELTY	8	Unmodified	_PQNQELTY_					0	0	0			REV__ENST00000261609.11_1_15:28538126-28544646:-|nuORF	REV__ENST00000261609.11_1_15:28538126-28544646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7384948730469	2	496.737814	991.461075	-0.057524	-2.8574E-05	0.64494	0.00032037	0.58742	0.00029179	496.73821613822196	34.005	0.32627	34.005	33.862	34.188	0					15	9	3	0	0	0	0.34985	1	11986	11986		76.847	2.5916	1	212520	+		29690	18018	20266	20338	30080	30080					-0.03499699724488892
PQNQELTY	8	Unmodified	_PQNQELTY_					0	0	0			REV__ENST00000261609.11_1_15:28538126-28544646:-|nuORF	REV__ENST00000261609.11_1_15:28538126-28544646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.73760986328125	2	496.737814	991.461075	-0.69379	-0.00034463	0.3144	0.00015618	-0.37939	-0.00018846	496.73794608766934	34.175	0.40408	34.175	34.005	34.409	0					26	8	4	0	0	0	0.44433	1	13030	13030		65.803	1.5959	1	926210	+		29691	18018	20266	20338	30081	30081					-0.03499699724488892
PQPWPVCF	8	Unmodified	_PQPWPVCF_					0	0	0			REV__ENST00000561457.2_1_9:139007800-139008082:-|nuORF	REV__ENST00000561457.2_1_9:139007800-139008082:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2342529296875	2	487.233656	972.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.568	1	37.568	37.068	38.068	0								0	0	0	1.7419	1	14703	14703		23.037	2.0898	1		+		29692	20295	20267	20339	30082	30082					-0.034569251747939234
PQQCVESAL	9	Unmodified	_PQQCVESAL_					0	0	0			REV__NUTM1|p.M697Wfs*28|1|0.12|ENSG00000184507|chr15:34356176-34356176|C/-|frameshift_variant	REV__NUTM1|p.M697Wfs*28|1|0.12|ENSG00000184507|chr15:34356176-34356176|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7332458496094	2	487.734217	973.453881	-0.53077	-0.00025888	-2.8079	-0.0013695	-3.3387	-0.0016284	487.732755217554	43.043	0.22791	43.043	42.907	43.134	0					12	6	3	0	0	0	0.45358	1	17202	17202		37.159	1.5408	1	166280	+		29693	16987	20268	20340	30083	30083					-0.033907555965583924
PQQGEAML	8	Unmodified	_PQQGEAML_					0	0	0		ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2099914550781	2	437.210378	872.406203	0.72484	0.00031691	-0.96364	-0.00042131	-0.23879	-0.0001044	437.2098907901482	37.421	0.30981	37.421	37.3	37.61	0					9	6	2	0	0	0	0.44433	1	14660	14660		65.803	2.4969	1	282920			29694	8051	20269	20341	30084	30084					-0.03510409796740532
PQQLTHNQ	8	Unmodified	_PQQLTHNQ_					0	0	0		MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2434387207031	2	483.243598	964.472643	0.67908	0.00032816	-1.1595	-0.00056034	-0.48046	-0.00023218	483.24303528195753	15.826	0.41143	15.826	15.669	16.08	0					18	8	4	0	0	0	0.34985	1	4413	4413		76.847	2.8719	1	1619800			29695	11354	20270	20342	30085	30085					-0.011014579104767108
PQQPQAQQR	9	Unmodified	_PQQPQAQQR_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.77978515625	2	540.780879	1079.5472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.922	1	30.922	30.422	31.422	0								0	0	0	0.35899	1	10587	10587		23.042	1.0826	1				29696	11455;11456	20271	20343	30086	30086					0.010613049008952657
PQRFDFVVSI	10	Unmodified	_PQRFDFVVSI_					0	0	0		ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.8868103027344	3	403.220513	1206.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.665	1	19.665	19.165	20.165	0								0	0	0	0.30854	1	5130	5130		49.536	13.089	1				29697	5638	20272	20344	30087	30087					0.04465389914435036
PQRKGGPPG	9	Unmodified	_PQRKGGPPG_					0	0	0			REV__COL22A1|p.G1411R|1|0.36|ENSG00000169436|chr8:138598853-138598853|C/G|missense_variant	REV__COL22A1|p.G1411R|1|0.36|ENSG00000169436|chr8:138598853-138598853|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2519226074219	2	447.251226	892.487899	0.6168	0.00027586	-0.11618	-5.1963E-05	0.50061	0.0002239	447.25144951728043	13.861	0.05024	13.861	13.814	13.864	0					4	2	2	0	0	0	0.49003	1	2768	2768		33.516	0.70317	1	54914	+		29698	12551	20273	20345	30088	30088					0.03735453677393252
PQSIQRDII	9	Unmodified	_PQSIQRDII_					0	0	0		RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2753295898438	2	535.303655	1068.59276	0.17608	9.4256E-05	0.7356	0.00039377	0.91168	0.00048803	535.3038505837299	37.067	0.3275	37.067	36.93	37.257	0					15	9	2	0	0	0	0.50858	1	13988	13988		31.53	1.0262	1	186970			29699	4280	20274	20346	30089	30089					0.061205303632732466
PQSPLSNT	8	Unmodified	_PQSPLSNT_					0	0	0			REV__ENST00000517914.1_1_8:25314857-25314992:-|nuORF	REV__ENST00000517914.1_1_8:25314857-25314992:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2148132324219	2	422.213975	842.413397	-0.03156	-1.3325E-05	0.079662	3.3634E-05	0.048101	2.0309E-05	422.21395973725396	27.489	0.17435	27.489	27.374	27.549	0					8	4	2	0	0	0	0.68432	1	8978	8978		35.618	6.4687	1	117760	+		29700	19923	20275	20347	30090	30090					-0.01411353924663672
PQSRSHKGCE	10	Unmodified	_PQSRSHKGCE_					0	0	0		ENST00000554161.1_1_14:95983343-95983631:+|nuORF	ENST00000554161.1_1_14:95983343-95983631:+|nuORF	ENST00000554161.1_1_14:95983343-95983631:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.7678833007812	2	564.764372	1127.51419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.448	1	11.448	10.948	11.948	0								0	0	0	0.4162	1	2226	2226		25.574	5.0922	1				29701	10643	20276	20348	30091	30091					-0.044466452134429346
PQVKCFLL	8	Unmodified	_PQVKCFLL_					0	0	0			REV__ALG10|p.F162Lfs*4|1|0.18|ENSG00000139133|chr12:34025975-34025975|T/-|frameshift_variant	REV__ALG10|p.F162Lfs*4|1|0.18|ENSG00000139133|chr12:34025975-34025975|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2742004394531	2	474.272781	946.531009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.129	1	31.129	30.629	31.629	0								0	0	0	1.7419	1	11301	11301		14.664	1.7049	1		+		29702	12138	20277	20349	30092	30092					0.05560507410439186
PQVMGPQDVGP	11	Oxidation (M)	_PQVM(Oxidation (M))GPQDVGP_		PQVM(1)GPQDVGP		PQVM(96)GPQDVGP	0	0	1			REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.7732543945312	2	570.771331	1139.52811	1.9984	0.0011406	0.87093	0.0004971	2.8694	0.0016377	570.7721228375574	14.587	0.19629	14.587	14.45	14.646	0					7	4	3	0	0	0	0.074969	1	3828	3828		95.815	18.498	1	644900	+		29703	14554	20278	20350	30093	30093		553			-0.036074125050163275
PRALTSGTHPG	11	Unmodified	_PRALTSGTHPG_					0	0	0			REV__ENST00000322313.8_1_2:128459548-128459872:-|nuORF	REV__ENST00000322313.8_1_2:128459548-128459872:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2896728515625	2	547.291079	1092.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.252	1	32.252	31.752	32.752	0								0	0	0	0.41312	1	11196	11196		34.173	1.3601	1		+		29704	18333	20279	20351	30094	30094					0.025024755606864346
PRANSLYFC	9	Unmodified	_PRANSLYFC_					0	0	0			REV__ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant	REV__ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.75732421875	2	535.758027	1069.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.086	1	11.086	10.586	11.586	0								0	0	0	0.40021	1	2111	2111		10.866	1.1599	1		+		29705	12921	20280	20352	30095	30095					-0.03047056605691978
PRCGRSPPSF	10	Unmodified	_PRCGRSPPSF_					0	0	0			REV__ENST00000376499.7_2_9:84303978-84304179:-|nuORF	REV__ENST00000376499.7_2_9:84303978-84304179:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.272216796875	2	552.274375	1102.5342	0.2455	0.00013558	-3.1241	-0.0017254	-2.8786	-0.0015898	552.2724023101366	29.77	0.13713	29.77	29.675	29.812	0					8	5	2	0	0	0	0.61187	1	9710	9710		32.812	1.2826	1	79728	+		29706	18718	20281	20353	30096	30096					-0.012968494828555777
PREPAKSVLP	10	Unmodified	_PREPAKSVLP_					0	0	0			REV__ENST00000426198.5_1_7:43965737-43965914:-|nuORF	REV__ENST00000426198.5_1_7:43965737-43965914:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.2169494628906	3	365.216991	1092.62914	0.48275	0.00017631	-0.37892	-0.00013839	0.10383	3.7919E-05	365.2168230211412	23.506	0.76858	23.506	23.179	23.947	0					42	15	4	0	0	0	0.65051	1	8064	8064		28.081	0	1	745770	+		29707	19111	20282	20354	30097	30097					0.08653407259998858
PREWTTTKT	9	Unmodified	_PREWTTTKT_					0	0	0			REV__nc|ENSG00000198373|O00308-4|WWP2	REV__nc|ENSG00000198373|O00308-4|WWP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.2908325195312	2	560.293288	1118.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.695	1	10.695	10.195	11.195	0								0	0	0	0.39567	1	2043	2043		12.207	0.69583	1		+		29708	17394	20283	20355	30098	30098					0.017479399836020093
PRFGGSRAGP	10	Unmodified	_PRFGGSRAGP_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.26690673828125	2	501.267407	1000.52026	-2.1087	-0.001057	0.68076	0.00034124	-1.4279	-0.00071578	501.2676913359861	21.845	0.3658	21.845	21.623	21.988	0					19	8	3	0	0	0	0.23612	1	6372	6372		75.043	8.614	1	902500			29709	763	20284	20356	30099	30099					0.02002241080379008
PRGKPKDK	8	Unmodified	_PRGKPKDK_					0	0	0			REV__sp|Q6SW10|UL133_HCMVMProteinUL133OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL133PE=4SV=1	REV__sp|Q6SW10|UL133_HCMVMProteinUL133OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL133PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2821350097656	2	463.282526	924.550499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.01	1	12.01	11.51	12.51	0								0	0	0	1.7419	1	2455	2455		63.306	9.9548	1		+		29710	21589	20285	20357	30100	30100					0.08520599745554591
PRGPGGRGLL	10	Unmodified	_PRGPGGRGLL_					0	0	0		nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4	nc|ENSG00000090006|Q8N2S1-3|LTBP4	nc|ENSG00000090006|Q8N2S1-3|LTBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.29486083984375	2	490.293425	978.572297	2.6582	0.0013033	0.30935	0.00015167	2.9676	0.001455	490.2933836348273	40.039	0.1925	40.039	39.9	40.092	0					8	4	3	0	0	0	0.65213	1	15883	15883		27.882	27.882	1	250040			29711	11447	20286	20358	30101	30101					0.0821540449414897
PRGSPASALV	10	Unmodified	_PRGSPASALV_					0	0	0		ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.77154541015625	2	477.771991	953.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.067	1	31.067	30.567	31.567	0								0	0	0	0.41967	1	10262	10262		24.519	0.31644	1				29712	3467	20287	20359	30102	30102					0.0508058964603606
PRGSPASALV	10	Unmodified	_PRGSPASALV_					0	0	0		ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7715759277344	2	477.771991	953.529429	-0.4197	-0.00020052	0.15799	7.5484E-05	-0.26171	-0.00012504	477.7719625818908	31.29	0.26829	31.29	31.157	31.426	0					10	6	2	0	0	0	0.52275	1	11774	11774		42.864	10.052	1	216360			29713	3467	20287	20359	30103	30103					0.0508058964603606
PRHMRVVL	8	Unmodified	_PRHMRVVL_					0	0	0		ENST00000265044.6_1_3:156260346-156260379:-|nuORF	ENST00000265044.6_1_3:156260346-156260379:-|nuORF	ENST00000265044.6_1_3:156260346-156260379:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343322753906	3	336.535889	1006.58584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.591	1	38.591	38.091	39.091	0								0	0	0	1.7419	1	13010	13010		18.324	0	1				29714	8341	20288	20360	30104	30104					0.08280939001735987
PRHPLGKVLA	10	Unmodified	_PRHPLGKVLA_					0	0	0			REV__ENST00000309976.13_1_18:11897346-11908343:-|nuORF	REV__ENST00000309976.13_1_18:11897346-11908343:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.2289733886719	3	363.229342	1086.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.792	1	20.792	20.292	21.292	0								0	0	0	0.38879	1	5867	5867		33.922	4.3709	1		+		29715	18263	20289	20361	30105	30105					0.12633123596424412
PRKDAAPALGP	11	Unmodified	_PRKDAAPALGP_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.8860778808594	3	364.876857	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.205	1	26.205	25.705	26.705	0								0	0	0	0.45674	1	8211	8211		20.03	0.033703	1				29716	6948	20290	20362	30106	30106					0.06660236600191638
PRKIPVKN	8	Unmodified	_PRKIPVKN_					0	0	0			REV__ST8SIA4|p.F303Lfs*8|1|0.06|ENSG00000113532|chr5:100812021-100812022|-/TGTGTAAA|frameshift_variant	REV__ST8SIA4|p.F303Lfs*8|1|0.06|ENSG00000113532|chr5:100812021-100812022|-/TGTGTAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.30621337890625	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.682	1	42.682	42.182	43.182	0								0	0	0	1.7419	1	16150	16150		18.324	4.5491	1		+		29717	14044	20291	20363	30107	30107					0.12525763159317194
PRKSHLMY	8	Unmodified	_PRKSHLMY_					0	0	0			REV__ENST00000483591.6_1_6:16432911-16433279:-|nuORF	REV__ENST00000483591.6_1_6:16432911-16433279:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.27978515625	2	516.276386	1030.53822	3.283	0.001695	3.008	0.001553	6.2911	0.0032479	516.2778197197795	30.222	0.85082	30.222	29.963	30.814	0					60	17	5	0	0	0	0.60719	1	11171	11171		47.916	3.3845	1	4368000	+		29718	19625	20292	20364	30108	30108					0.024172400108682268
PRLFAEEK	8	Unmodified	_PRLFAEEK_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.27423095703125	2	495.274367	988.53418	-0.65779	-0.00032579	-1.2502	-0.00061917	-1.9079	-0.00094496	495.27439263700785	33.509	0.54385	33.509	33.249	33.793	0					19	11	2	0	0	0	0.43813	1	12730	12730		66.429	6.311	1	621780			29719	5509	20293	20365	30109	30109					0.03945473788792242
PRLFASWLQ	9	Unmodified	_PRLFASWLQ_					0	0	0			REV__ENST00000296679.8_1_5:76788170-76788245:-|nuORF	REV__ENST00000296679.8_1_5:76788170-76788245:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.5441589355469	3	373.209948	1116.60801	0.84612	0.00031578	-1.4195	-0.00052979	-0.57343	-0.00021401	373.20966135483764	38.158	1.3268	38.158	37.931	39.257	0					79	46	2	0	0	0	0.5879	1	14891	14891		17.468	0	1	115510	+		29720	18182	20294	20366	30110	30110					0.054374419511077576
PRLLWAPK	8	Unmodified	_PRLLWAPK_					0	0	0		ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.8039245605469	2	490.805637	979.596721	-2.7531	-0.0013512	-1.0458	-0.00051329	-3.7989	-0.0018645	490.8050685327641	17.509	0.16708	17.509	17.431	17.598	0					10	5	3	0	0	0	0.3961	1	4378	4378		60.294	7.9948	1	307030			29721	7012	20295	20367	30111	30111					0.10610664647640533
PRNCYHSATL	10	Unmodified	_PRNCYHSATL_					0	0	0		ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.2776489257812	2	581.277115	1160.53968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.69	1	19.69	19.19	20.19	0								0	0	0	0.34115	1	5396	5396		44.377	0	1				29722	7950	20296	20368	30112	30112					-0.03417170691045612
PRPGSAGLDAL	11	Unmodified	_PRPGSAGLDAL_					0	0	0			REV__ENST00000307422.9_2_19:10370504-10370603:+|nuORF	REV__ENST00000307422.9_2_19:10370504-10370603:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.29052734375	2	527.288005	1052.56146	3.4726	0.0018311	0.74467	0.00039266	4.2173	0.0022237	527.288401011444	41.554	0.27975	41.554	41.465	41.745	0					20	7	4	0	0	0	0.42746	1	16559	16559		49.536	0.094497	1	496840	+		29723	18248	20297	20369	30113	30113					0.0372795732916984
PRPHPSPPHC	10	Unmodified	_PRPHPSPPHC_					0	0	0			REV__ENST00000536957.5_1_12:120661994-120662090:-|nuORF	REV__ENST00000536957.5_1_12:120661994-120662090:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.7747802734375	2	562.774542	1123.53453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.811	1	29.811	29.311	30.311	0								0	0	0	0.38797	1	9739	9739		34.173	0	1		+		29724	20110	20298	20370	30114	30114					-0.022294297629741777
PRPLRGRSPG	10	Unmodified	_PRPLRGRSPG_					0	0	0		ENST00000421671.6_1_6:33754529-33756808:-|nuORF	ENST00000421671.6_1_6:33754529-33756808:-|nuORF	ENST00000421671.6_1_6:33754529-33756808:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.824951171875	2	546.822881	1091.63121	0.4435	0.00024251	4.4333	0.0024242	4.8768	0.0026668	546.8255206672654	26.448	0.13789	26.448	26.356	26.494	0					10	3	4	0	0	0	0.5155	1	9134	9134		47.657	8.9432	1	670670			29725	9401	20299	20371	30115	30115					0.08905880788461218
PRPPSDDQK	9	Unmodified	_PRPPSDDQK_					0	0	0			REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2642822265625	2	520.261988	1038.50942	3.3675	0.001752	1.5598	0.0008115	4.9273	0.0025635	520.2628540454707	15.473	0.30126	15.473	15.38	15.681	0					8	6	2	0	0	0	0.39215	1	4085	4085		42.396	5.9494	1	1183000	+		29726	14696	20300	20372	30116	30116					-0.00829206084586076
PRPSATHGRG	10	Unmodified	_PRPSATHGRG_					0	0	0			REV__ENST00000566525.5_1_16:770887-771532:+|nuORF	REV__ENST00000566525.5_1_16:770887-771532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2775268554688	2	518.275764	1034.53697	0.46073	0.00023879	3.0889	0.0016009	3.5497	0.0018397	518.2774161488576	31.014	0.10903	31.014	30.961	31.07	0					6	4	2	0	0	0	0.58189	1	9938	9938		36.447	2.9312	1	71672	+		29727	20345	20301	20373	30117	30117					0.021087419663217588
PRPSFPLAT	9	Unmodified	_PRPSFPLAT_					0	0	0			REV__ENST00000539777.5_1_1:168105623-168105902:-|nuORF	REV__ENST00000539777.5_1_1:168105623-168105902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2749328613281	2	493.276909	984.539266	0.0029086	1.4348E-06	-4.2613	-0.002102	-4.2584	-0.0021006	493.2747751332282	18.059	0.25509	18.059	17.863	18.118	0					6	5	2	0	0	0	0.60749	1	4649	4649		20.947	0.4651	1	131170	+		29728	20126	20302	20374	30118	30118					0.04637777651419128
PRPSPASSPK	10	Unmodified	_PRPSPASSPK_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2825317382812	2	512.282723	1022.55089	1.1895	0.00060935	-2.5731	-0.0013182	-1.3836	-0.00070881	512.2814778121486	15.245	0.11861	15.245	15.169	15.287	0					5	3	2	0	0	0	0.64162	1	3277	3277		29.17	1.2878	1	99312			29729	4076	20303	20375	30119	30119					0.0405197467475773
PRPSRDPHP	9	Unmodified	_PRPSRDPHP_					0	0	0			REV__ENSG00000174332|ENST00000628545|GLIS1	REV__ENSG00000174332|ENST00000628545|GLIS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7797241210938	2	529.778139	1057.54173	1.7347	0.00091899	0.97419	0.0005161	2.7089	0.0014351	529.778795790662	22.848	0.46883	22.848	22.744	23.212	0					15	9	3	0	0	0	0.2873	1	7780	7780		51.335	51.335	1	1922200	+		29730	16561	20304	20376	30120	30120					0.015256261091053602
PRPVPKPR	8	Unmodified	_PRPVPKPR_					0	0	0		nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A;ENST00000570320.5_1_16:24931453-24947070:-|nuORF;nc|ENSG00000140750|Q68EM7-7|ARHGAP17;ENST00000575283.5_1_16:24931453-24951019:-|nuORF;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	nc|ENSG00000141971|Q96EY5-3|MVB12A;nc|ENSG00000140750|Q68EM7-2|ARHGAP17	nc|ENSG00000140750|Q68EM7-2|ARHGAP17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.780517578125	2	473.800886	945.587219	-2.554	-0.0012101	0.58789	0.00027854	-1.9661	-0.00093155	473.80108049263333	20.005	0.14512	20.005	19.906	20.051	0					7	3	3	0	0	0	0.70055	1	5536	5536		33.516	33.516	1	408040			29731	4479;4407	20305	20377	30121	30121					0.11224896362125492
PRQHPGGIW	9	Unmodified	_PRQHPGGIW_					0	0	0			REV__ENST00000435439.5_1_22:46493806-46505161:+|nuORF	REV__ENST00000435439.5_1_22:46493806-46505161:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2827758789062	2	524.277775	1046.541	1.6264	0.00085269	-1.3417	-0.00070343	0.2847	0.00014926	524.2766235450517	32.01	0.26807	32.01	31.902	32.17	0					18	5	4	0	0	0	0.23186	1	11993	11993		57.811	1.0902	1	675120	+		29732	18777	20306	20378	30122	30122					0.019588314600468948
PRRAEGSGR	9	Unmodified	_PRRAEGSGR_					0	0	0			REV__SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant	REV__SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.18084716796875	3	329.181051	984.521324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.546	1	45.546	45.046	46.046	0								0	0	0	0.39362	1	15495	15495		12.812	0.60503	1		+		29733	17579	20307	20379	30123	30123					0.02844455449292127
PRREEEPR	8	Unmodified	_PRREEEPR_					0	0	0		nc|ENSG00000173327|Q16584-2|MAP3K11;ENSG00000173327|ENST00000309100|MAP3K11	REV__ENST00000506502.2_1_5:145583270-145598550:+|nuORF	REV__ENST00000506502.2_1_5:145583270-145598550:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7822265625	2	534.780879	1067.5472	3.3747	0.0018047	-0.59179	-0.00031648	2.7829	0.0014883	534.780519027966	22.262	0.31451	22.262	22.207	22.521	0					12	6	2	0	0	0	0.3961	1	7387	7387		71.296	0	1	2959700			29734	6423	20308	20380	30124	30124					0.01613304900888579
PRRGEARQ	8	Unmodified	_PRRGEARQ_					0	0	0		ENST00000545260.5_2_10:35104082-35104166:-|nuORF	ENST00000545260.5_2_10:35104082-35104166:-|nuORF	ENST00000545260.5_2_10:35104082-35104166:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.27069091796875	2	485.270481	968.52641	-0.25143	-0.00012201	0.25221	0.00012239	0.00077835	3.7771E-07	485.2705770509897	11.628	0.088093	11.628	11.586	11.674	0					8	3	3	0	0	0	0.46905	1	2206	2206		63.306	6.5852	1	1067200			29735	10574	20309	20381	30125	30125					0.04088759311889589
PRRGRDPG	8	Unmodified	_PRRGRDPG_					0	0	0		ENST00000418273.2_1_10:88730536-88730896:-|nuORF	ENST00000418273.2_1_10:88730536-88730896:-|nuORF	ENST00000418273.2_1_10:88730536-88730896:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.7524719238281	2	455.751924	909.489296	0.14872	6.778E-05	1.0717	0.00048842	1.2204	0.0005562	455.7523353130625	29.301	0.18044	29.301	29.209	29.39	0					7	4	2	0	0	0	0.77246	1	9871	9871		24.203	1.1603	1	72910			29736	9379	20310	20382	30126	30126					0.030930877661262457
PRRGTVMYVGA	11	Unmodified	_PRRGTVMYVGA_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	603.8253173828125	2	603.824232	1205.63391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.032	1	27.032	26.532	27.532	0								0	0	0	0.43542	1	8790	8790		29.17	2.4771	1				29737	9141	20311	20383	30127	30127					0.039319681311098975
PRRISVSR	8	Unmodified	_PRRISVSR_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENST00000497475.5_1_3:69245990-69247907:-|nuORF	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.3017578125	2	485.798875	969.583196	-1.2399	-0.00060232	0.71689	0.00034826	-0.52297	-0.00025406	485.80013698192164	33.686	0.13594	33.686	33.65	33.785	0					9	5	3	0	0	0	0.75323	1	11323	11323		26.693	0	1	56014			29738	2855	20312	20384	30128	30128					0.09718806868420415
PRRPPAGAR	9	Unmodified	_PRRPPAGAR_					0	0	0		ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2926025390625	2	489.291217	976.567881	2.6248	0.0012843	0.059805	2.9262E-05	2.6847	0.0013136	489.2912474343064	28.534	0.36599	28.534	28.426	28.792	0					16	7	3	0	0	0	0.26904	1	10360	10360		53.351	3.3269	1	1399300			29739	9622	20313	20385	30129	30129					0.07865940071224031
PRSAAPLL	8	Unmodified	_PRSAAPLL_					0	0	0			REV__ENST00000469466.1_1_22:19131937-19132153:-|nuORF	REV__ENST00000469466.1_1_22:19131937-19132153:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.7537536621094	2	412.75307	823.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.56	1	11.56	11.06	12.06	0								0	0	0	1.7419	1	2397	2397		37.028	1.8278	1		+		29740	13511	20314	20386	30130	30130					0.07278123451237661
PRSLDSLIR	9	Unmodified	_PRSLDSLIR_					0	0	0		ENST00000266269.9_2_22:31741609-31741828:-|nuORF	ENST00000266269.9_2_22:31741609-31741828:-|nuORF	ENST00000266269.9_2_22:31741609-31741828:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.8115844726562	2	528.811648	1055.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.734	1	15.734	15.234	16.234	0								0	0	0	0.3428	1	4213	4213		26.693	0	1				29741	8352	20315	20387	30131	30131					0.08316236600194316
PRSPLSLEA	9	Unmodified	_PRSPLSLEA_					0	0	0		ENST00000301633.8_1_17:76220486-76220657:+|nuORF	ENST00000301633.8_1_17:76220486-76220657:+|nuORF	ENST00000301633.8_1_17:76220486-76220657:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2715148925781	2	485.271824	968.529095	0.027381	1.3287E-05	-0.54062	-0.00026235	-0.51324	-0.00024906	485.2715920159077	31.558	0.33656	31.558	31.44	31.776	0					34	15	3	0	0	0	0.4966	1	10126	10126		32.812	4.9302	1	303060			29742	8493	20316	20388	30132	30132					0.04357169926197457
PRSPSPEPTV	10	Unmodified	_PRSPSPEPTV_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE;ENSG00000126368|ENST00000246672|NR1D1	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7752685546875	2	533.780013	1065.54547	0.47653	0.00025436	-0.81598	-0.00043556	-0.33946	-0.0001812	533.7792955985833	31.635	0.18345	31.635	31.53	31.713	0					11	8	2	0	0	0	0.60281	1	10156	10156		33.922	3.6039	1	56514			29743	4499	20317	20389	30133	30133					0.015322510922715082
PRSQISVL	8	Unmodified	_PRSQISVL_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;MAN2A2|p.V832Rfs*6|1|0.43|ENSG00000196547|chr15:90912894-90912895|-/C|frameshift_variant;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;MAN2A2|p.E58Lfs*11|1|0.46|ENSG00000196547|chr15:90905288-90905289|-/CCTGCCA|frameshift_variant	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2688293457031	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.454	1	12.454	11.954	12.954	0								0	0	0	1.7419	1	2624	2624		17.365	0	1				29744	7378	20318	20390	30134	30134					0.07029491134380805
PRSVGRRTG	9	Unmodified	_PRSVGRRTG_					0	0	0			REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.1940002441406	3	329.19318	984.55771	0.54761	0.00018027	2.0805	0.00068488	2.6281	0.00086515	329.19375296713054	21.899	0.26122	21.899	21.793	22.054	0					13	5	3	0	0	0	0.53083	1	7342	7342		29.17	6.5904	1	1050400	+		29745	20064	20319	20391	30135	30135					0.06481332346004365
PRTIYSSF	8	Unmodified	_PRTIYSSF_					0	0	0		DLX5|p.R138H|1|0.13|ENSG00000105880|chr7:97022312-97022312|C/T|missense_variant;nc|ENSG00000105880|P56178-2|DLX5;nc|ENSG00000115844|Q07687-2|DLX2;ENSG00000105880|ENST00000648378|DLX5;ENSG00000115844|ENST00000234198|DLX2	DLX5|p.R138H|1|0.13|ENSG00000105880|chr7:97022312-97022312|C/T|missense_variant	DLX5|p.R138H|1|0.13|ENSG00000105880|chr7:97022312-97022312|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7535400390625	2	485.753267	969.491981	-0.24631	-0.00011965	0.83242	0.00040435	0.5861	0.0002847	485.75355160121705	35.982	0.23523	35.982	35.906	36.142	0					14	8	3	0	0	0	0.25102	1	12847	12847		99.375	10.732	1	323860			29746	800	20320	20392	30136	30136					0.006014983804220719
PRVDFWTSTI	10	Unmodified	_PRVDFWTSTI_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.3186645507812	2	611.316763	1220.61897	2.9496	0.0018031	-0.028606	-1.7487E-05	2.921	0.0017856	611.3168578491925	42.464	0.22234	42.464	42.323	42.545	0					10	6	2	0	0	0	0.67098	1	16961	16961		25.574	4.6271	1	50958			29747	5313	20321	20393	30137	30137					0.01748799534743739
PRVQEKPD	8	Unmodified	_PRVQEKPD_					0	0	0		MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant;MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B	MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant	MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7611083984375	2	484.761623	967.508694	-0.5769	-0.00027966	-0.072865	-3.5322E-05	-0.64976	-0.00031498	484.7615619533126	25.17	0.32081	25.17	25.11	25.431	0					8	6	2	0	0	0	0.78978	1	8817	8817		21.96	0.25755	1	304510			29748	1932	20322	20394	30138	30138					0.02363999266378869
PRWCWGDH	8	Unmodified	_PRWCWGDH_					0	0	0		ENST00000444874.5_1_7:99950069-99950487:+|nuORF	ENST00000444874.5_1_7:99950069-99950487:+|nuORF	ENST00000444874.5_1_7:99950069-99950487:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7279663085938	2	528.727061	1055.43957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.429	1	10.429	9.9292	10.929	0								0	0	0	1.7419	1	1987	1987		12.959	0.75233	1				29749	9608	20323	20395	30139	30139					-0.08593363234172102
PRYIMAGFPV	10	Unmodified	_PRYIMAGFPV_					0	0	0		ENSG00000174840|ENST00000311180|PDE12;nc|ENSG00000174840|Q6L8Q7-2|PDE12	ENSG00000174840|ENST00000311180|PDE12	ENSG00000174840|ENST00000311180|PDE12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.8056030273438	2	575.807519	1149.60049	0.99604	0.00057353	-3.3172	-0.0019101	-2.3211	-0.0013365	575.804948939419	29.725	0.31662	29.725	29.616	29.933	0					9	6	2	0	0	0	0.4943	1	11050	11050		45.952	3.4775	1	233620			29750	6516	20324	20396	30140	30140					0.03166966359185608
PSAEAYLLHT	10	Unmodified	_PSAEAYLLHT_					0	0	0		TBX6|p.P353T|1|0.25|ENSG00000149922|chr16:30086552-30086552|G/T|missense_variant	TBX6|p.P353T|1|0.25|ENSG00000149922|chr16:30086552-30086552|G/T|missense_variant	TBX6|p.P353T|1|0.25|ENSG00000149922|chr16:30086552-30086552|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2804565429688	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.628	1	28.628	28.128	29.128	0								0	0	0	0.40862	1	9527	9527		27.882	0	1				29751	22517	20325	20397	30141	30141					0.003971352350390589
PSAFWGRSRDP	11	Unmodified	_PSAFWGRSRDP_					0	0	0		ENST00000247706.3_1_19:17403215-17403443:-|nuORF	ENST00000247706.3_1_19:17403215-17403443:-|nuORF	ENST00000247706.3_1_19:17403215-17403443:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	638.3143310546875	2	638.315086	1274.61562	-0.3719	-0.00023739	-0.44626	-0.00028486	-0.81816	-0.00052225	638.3146976925105	23.788	0.81485	23.788	23.679	24.494	0					50	16	4	0	0	0	0.75295	1	8396	8396		22.58	0.89391	1	913840			29752	8234	20326	20398	30142	30142					-0.010704505192506986
PSAGRTELA	9	Unmodified	_PSAGRTELA_					0	0	0		ENST00000521401.1_1_7:27150342-27166549:-|nuORF	ENST00000521401.1_1_7:27150342-27166549:-|nuORF	ENST00000521401.1_1_7:27150342-27166549:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.24029541015625	2	451.240524	900.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.93	1	22.93	22.43	23.43	0								0	0	0	0.34845	1	6561	6561		25.574	2.5316	1				29753	10311	20327	20399	30143	30143					0.012280238579819525
PSAGSSSSCSS	11	Unmodified	_PSAGSSSSCSS_					0	0	0		ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.6859130859375	2	478.684921	955.355289	3.4502	0.0016516	-1.7738	-0.00084909	1.6764	0.00080248	478.68402877215897	20.362	0.38533	20.362	20.128	20.514	0					14	12	2	0	0	0	0.78104	1	5627	5627		19.104	0.77911	1	69790			29754	8078	20328	20400	30144	30144					-0.12417403632252899
PSAKHRKIA	9	Unmodified	_PSAKHRKIA_					0	0	0		nc|ENSG00000204764|Q9H2T7-2|RANBP17;RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF	nc|ENSG00000204764|Q9H2T7-2|RANBP17	nc|ENSG00000204764|Q9H2T7-2|RANBP17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.3104553222656	2	504.309075	1006.6036	2.9319	0.0014786	-0.31056	-0.00015662	2.6213	0.001322	504.3089205792018	45.229	0.49641	45.229	45.1	45.597	0					71	20	5	0	0	0	0.20551	1	18091	18091		60.972	2.742	1	5635000			29755	7723	20329	20401	30145	30145					0.10055977528213589
PSASARAL	8	Unmodified	_PSASARAL_					0	0	0			REV__ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant	REV__ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.7192077636719	2	386.719227	771.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.179	1	21.179	20.679	21.679	0								0	0	0	1.7419	1	6038	6038		39.253	2.0937	1		+		29756	12238	20330	20402	30146	30146					0.029046735204133256
PSATRSGAKK	10	Unmodified	_PSATRSGAKK_					0	0	0			REV__ENSG00000215115|ENST00000535490|CXorf49	REV__ENSG00000215115|ENST00000535490|CXorf49	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.86260986328125	3	334.861207	1001.56179	3.0121	0.0010086	0.98705	0.00033052	3.9991	0.0013391	334.8615717383332	16.722	0.50704	16.722	16.617	17.124	0					16	10	3	0	0	0	0.57126	1	4699	4699		37.6	3.6783	1	3574900	+		29757	17593	20331	20403	30147	30147					0.061073770490338575
PSCCTPVHR	9	Unmodified	_PSCCTPVHR_					0	0	0		ENST00000536221.1_8:145484984-145485693:+|nuORF	ENST00000536221.1_8:145484984-145485693:+|nuORF	ENST00000536221.1_8:145484984-145485693:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2289733886719	2	500.228579	998.442605	0.36258	0.00018138	0.40408	0.00020213	0.76667	0.00038351	500.2287175773348	22.447	0.47964	22.447	22.25	22.73	0					39	14	4	0	0	0	0.48389	1	6319	6319		34.173	5.023	1	806310			29758	10486	20332	20404	30148	30148					-0.056678561716694276
PSDDEDEDEDE	11	Unmodified	_PSDDEDEDEDE_					0	0	0			REV__ENST00000596243.5_1_19:50382536-50391878:+|nuORF	REV__ENST00000596243.5_1_19:50382536-50391878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	648.2089233398438	2	647.707499	1293.40044	0.35641	0.00023085	-1.0139	-0.00065672	-0.65751	-0.00042587	648.2082181355878	49.662	0.90408	49.662	49.403	50.307	0					70	39	2	0	0	0	0.72154	1	18008	18008		25.574	1.0549	1	528200	+		29759	20564	20333	20405	30149	30149					-0.23451971146710093
PSDDEEEDDED	11	Unmodified	_PSDDEEEDDED_					0	0	0			REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	647.7057495117188	2	647.707499	1293.40044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.344	1	49.344	48.844	49.844	0								0	0	0	0.45674	1	14926	14926		14.137	0	1		+		29760	15283	20334	20406	30150	30150					-0.23451971146710093
PSDDEEEDDED	11	Unmodified	_PSDDEEEDDED_					0	0	0			REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	648.207275390625	2	647.707499	1293.40044	0.35641	0.00023085	-1.0139	-0.00065672	-0.65751	-0.00042587	648.2082181355878	49.662	0.90408	49.662	49.403	50.307	0					70	39	2	0	0	0	0.77686	2	18120	17976;18120		19.997	0	1	528200	+		29761	15283	20334	20406	30151;30152	30152					-0.23451971146710093
PSDITIYHL	9	Unmodified	_PSDITIYHL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.780517578125	2	529.779482	1057.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.822	1	42.822	42.322	43.322	0								0	0	0	0.03352	1	16203	16203		94.006	30.7	1				29762	2268	20335	20407	30153	30153					0.017940367233677534
PSDITIYHL	9	Unmodified	_PSDITIYHL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7802124023438	2	529.779482	1057.54441	0.73117	0.00038736	1.4016	0.00074256	2.1328	0.0011299	529.7800875663588	42.719	0.16089	42.719	42.673	42.834	0					7	4	2	0	0	0	0.05357	1	17073	17073		94.006	30.7	1	44872			29763	2268	20335	20407	30154	30154					0.017940367233677534
PSDITIYHL	9	Unmodified	_PSDITIYHL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7807006835938	2	529.779482	1057.54441	1.6301	0.00086359	2.1115	0.0011186	3.7416	0.0019822	529.7809548482334	42.737	0.37278	42.737	42.662	43.035	0					13	11	2	0	0	0	0.20551	1	17089	17089		60.972	20.399	1	77104			29764	2268	20335	20407	30155	30155					0.017940367233677534
PSDRSGQLR	9	Unmodified	_PSDRSGQLR_					0	0	0			REV__ENST00000419984.6_1_7:56101084-56118851:-|nuORF	REV__ENST00000419984.6_1_7:56101084-56118851:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.26763916015625	2	508.267604	1014.52066	0.91344	0.00046427	-0.97989	-0.00049805	-0.06645	-3.3774E-05	508.26708675951016	16.042	0.10623	16.042	16.003	16.109	0					8	4	2	0	0	0	0.42902	1	3592	3592		39.253	2.8061	1	173880	+		29765	19066	20336	20408	30156	30156					0.013976160095694468
PSDSHFKITF	10	Unmodified	_PSDSHFKITF_					0	0	0		FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant;FAM111B|p.I283Lfs*16|1|0.32|ENSG00000189057|chr11:59124938-59124938|A/-|frameshift_variant;FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant	FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.5328369140625	3	393.532868	1177.57677	0.43728	0.00017209	-0.44176	-0.00017385	-0.0044729	-1.7602E-06	393.53271030541316	28.15	0.5175	28.15	27.993	28.511	0					37	10	7	0	0	0	0.57211	1	10175	10175		37.508	5.9784	1	3134100			29766	7297	20337	20409	30157	30157					-0.004911758736398042
PSDVSVEALDE	11	Unmodified	_PSDVSVEALDE_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.5172119140625	3	387.515431	1159.52446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.625	1	41.625	41.125	42.125	0								0	0	0	0.40356	1	16570	16570		36.318	4.6834	1		+		29767	14799	20338	20410	30158	30158					-0.04891803797909233
PSEDSSLKWER	11	Unmodified	_PSEDSSLKWER_					0	0	0			REV__RUSC2|p.Q227R|1|0.29|ENSG00000198853|chr9:35547201-35547201|A/G|missense_variant	REV__RUSC2|p.Q227R|1|0.29|ENSG00000198853|chr9:35547201-35547201|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.217041015625	3	445.217608	1332.63099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.886	1	31.886	31.386	32.386	0								0	0	0	0.45674	1	11028	11028		22.562	2.9347	1		+		29768	21480	20339	20411	30159	30159					-0.022016285126937873
PSEMRLCR	8	Oxidation (M)	_PSEM(Oxidation (M))RLCR_		PSEM(1)RLCR		PSEM(60)RLCR	0	0	1			REV__ENST00000449943.5_1_11:64895819-64896227:-|nuORF	REV__ENST00000449943.5_1_11:64895819-64896227:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.24310302734375	2	504.241686	1006.46882	3.6481	0.0018395	-0.5168	-0.00026059	3.1313	0.0015789	504.2414844165062	23.552	0.22791	23.552	23.461	23.689	0					17	8	3	0	0	0	0.49887	1	7077	7077		60.294	60.294	1	253590	+		29769	19305	20340	20412	30160	30160		709			-0.03415587000188225
PSEPRSVSF	9	Unmodified	_PSEPRSVSF_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.25360107421875	2	503.253631	1004.49271	0.56628	0.00028498	0.027139	1.3658E-05	0.59342	0.00029864	503.2536158347776	31.935	0.36707	31.935	31.713	32.08	0					20	15	2	0	0	0	0.47038	1	10273	10273		35.618	1.4457	1	81221	+		29770	15056	20341	20413	30161	30161					-0.009357069705174581
PSERPRTR	8	Unmodified	_PSERPRTR_					0	0	0			REV__ENST00000534706.1_1_11:6630001-6630227:+|nuORF	REV__ENST00000534706.1_1_11:6630001-6630227:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7754821777344	2	499.778139	997.541725	-1.035	-0.00051727	-2.5848	-0.0012918	-3.6198	-0.0018091	499.77659805496296	24.314	1.0466	24.314	24.15	25.196	0					79	34	3	0	0	0	0.72381	1	7703	7703		30.504	0	1	585550	+		29771	20096	20342	20414	30162	30162					0.04285626109083296
PSETVLCKVP	10	Unmodified	_PSETVLCKVP_					0	0	0		ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7896118164062	2	536.788992	1071.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.376	1	37.376	36.876	37.876	0								0	0	0	0.39244	1	14165	14165		32.812	1.2826	1				29772	9538	20343	20415	30163	30163					0.0305125002278146
PSFLPGETAP	10	Unmodified	_PSFLPGETAP_					0	0	0			REV__ENST00000509566.1_1_4:844107-866085:-|nuORF	REV__ENST00000509566.1_1_4:844107-866085:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2590637207031	2	508.258382	1014.50221	0.47638	0.00024213	0.24062	0.0001223	0.71701	0.00036442	508.25865934007913	29.398	0.13282	29.398	29.31	29.443	0					5	3	2	0	0	0	0.54197	1	9892	9892		40.778	0	1	41947	+		29773	16753	20344	20416	30164	30164					-0.0044593868499305245
PSFWGQQPL	9	Unmodified	_PSFWGQQPL_					0	0	0		DAB1|p.L420Pfs*9|1|0.38|ENSG00000173406|chr1:57015167-57015168|-/G|frameshift_variant;DAB1|p.A369Gfs*60|1|0.22|ENSG00000173406|chr1:57015320-57015321|-/C|frameshift_variant;nc|ENSG00000173406|O75553-3|DAB1;nc|ENSG00000173406|O75553-4|DAB1;nc|ENSG00000173406|O75553-5|DAB1;ENSG00000173406|ENST00000371236|DAB1;nc|ENSG00000173406|O75553|DAB1	DAB1|p.L420Pfs*9|1|0.38|ENSG00000173406|chr1:57015167-57015168|-/G|frameshift_variant	DAB1|p.L420Pfs*9|1|0.38|ENSG00000173406|chr1:57015167-57015168|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2667846679688	2	530.266542	1058.51853	0.729	0.00038656	-0.36582	-0.00019398	0.36318	0.00019258	530.2662438188883	21.051	0.16691	21.051	20.943	21.11	0					6	3	2	0	0	0	0.43426	1	6801	6801		38.806	0	1	514520			29774	736	20345	20417	30165	30165					-0.008388127282387359
PSGAEARTLL	10	Unmodified	_PSGAEARTLL_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7818908691406	2	507.782556	1013.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.563	1	34.563	34.063	35.063	0								0	0	0	0.38475	1	12244	12244		35.152	2.4015	1		+		29775	14224	20346	20418	30166	30166					0.04432554954905754
PSGARRNILQT	11	Unmodified	_PSGARRNILQT_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	606.8455810546875	2	606.84401	1211.67347	2.9667	0.0018003	-0.60436	-0.00036675	2.3623	0.0014336	606.8435306213956	36.342	0.86296	36.342	35.898	36.761	0					42	17	3	0	0	0	0.46959	1	14109	14109		46.457	2.0796	1	615630			29776	4207	20347	20419	30167	30167					0.07609811406177869
PSGEGLLRH	9	Unmodified	_PSGEGLLRH_					0	0	0			REV__ENST00000308511.8_1_8:22477609-22477870:+|nuORF	REV__ENST00000308511.8_1_8:22477609-22477870:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.5101318359375	3	322.510286	964.509028	0.37202	0.00011998	-0.4331	-0.00013968	-0.06108	-1.9699E-05	322.5100569105906	20.992	0.11933	20.992	20.92	21.039	0					5	3	2	0	0	0	0.46194	1	5720	5720		36.447	0	1	81359	+		29777	18256	20348	20420	30168	30168					0.02535418986235527
PSGENGGGG	9	Unmodified	_PSGENGGGG_					0	0	0			REV__nc|ENSG00000176842|P78411-3|IRX5	REV__nc|ENSG00000176842|P78411-3|IRX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.652587890625	2	366.151375	730.288196	1.0001	0.00036618	1.1026	0.00040371	2.1027	0.00076989	366.15309908654484	45.514	0.37842	45.514	45.327	45.705	0					28	14	3	0	0	0	0.5879	1	18249	18249		23.042	2.0956	1	231730	+		29778	16672	20349	20421	30169	30169					-0.08773646061024465
PSGFGGPF	8	Unmodified	_PSGFGGPF_					0	0	0			REV__RPA2|p.S23F|1|0.32|ENSG00000117748|chr1:27914112-27914112|G/A|missense_variant	REV__RPA2|p.S23F|1|0.32|ENSG00000117748|chr1:27914112-27914112|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.1817626953125	2	383.181946	764.34934	0.089572	3.4322E-05	-0.33762	-0.00012937	-0.24805	-9.5047E-05	383.18181020564066	27.621	0.39497	27.621	27.529	27.924	0					18	9	3	0	0	0	0.66238	1	9675	9675		39.021	13.571	1	616810	+		29779	21474	20350	20422	30170	30170					-0.04226089290955315
PSGGPLST	8	Unmodified	_PSGGPLST_					0	0	0			REV__ENST00000565652.1_1_15:75659894-75660566:-|nuORF	REV__ENST00000565652.1_1_15:75659894-75660566:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.18572998046875	2	358.184686	714.354819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.785	1	30.785	30.285	31.285	0								0	0	0	1.7419	1	11136	11136		25.45	2.4135	1		+		29780	20339	20351	20423	30171	30171					-0.01378410499137317
PSGILHTLGL	10	Unmodified	_PSGILHTLGL_					0	0	0			REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.3113708496094	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.568	1	45.568	45.068	46.068	0								0	0	0	0.38797	1	17618	17618		34.173	11.13	1		+		29781	14123	20352	20424	30172	30172					0.0781033333993264
PSGIPRVVP	9	Unmodified	_PSGIPRVVP_					0	0	0		ENST00000523752.5_1_8:22877945-22878461:-|nuORF	ENST00000523752.5_1_8:22877945-22878461:-|nuORF	ENST00000523752.5_1_8:22877945-22878461:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2795104980469	2	461.279452	920.544351	2.5516	0.001177	-1.4262	-0.00065787	1.1254	0.00051911	461.2789154027545	32.295	0.62307	32.295	32.034	32.657	0					23	12	2	0	0	0	0.37197	1	12150	12150		44.117	1.6423	1	570950			29782	10337	20353	20425	30173	30173					0.08090081514046688
PSGKLSAPGP	10	Unmodified	_PSGKLSAPGP_					0	0	0			REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF	REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.75311279296875	2	455.753267	909.491981	-0.13844	-6.3095E-05	-0.369	-0.00016817	-0.50744	-0.00023127	455.75313671403484	29.482	0.25145	29.482	29.381	29.633	0					10	5	2	0	0	0	0.52275	1	10931	10931		42.864	0.46813	1	226410	+		29783	18006	20354	20426	30174	30174					0.03361498380411376
PSGKLSAPGP	10	Unmodified	_PSGKLSAPGP_					0	0	0			REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF	REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7535095214844	2	455.753267	909.491981	-0.42773	-0.00019494	0.19077	8.6944E-05	-0.23696	-0.000108	455.7533257042944	29.436	0.30954	29.436	29.307	29.617	0					11	6	2	0	0	0	0.38179	1	10784	10784		58.246	10.589	1	275570	+		29784	18006	20354	20426	30175	30175					0.03361498380411376
PSGLHARV	8	Unmodified	_PSGLHARV_					0	0	0		ZNF74|p.R631Efs*84|1|0.51|ENSG00000185252|chr22:20406918-20406918|C/-|frameshift_variant	ZNF74|p.R631Efs*84|1|0.51|ENSG00000185252|chr22:20406918-20406918|C/-|frameshift_variant	ZNF74|p.R631Efs*84|1|0.51|ENSG00000185252|chr22:20406918-20406918|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.7384948730469	2	418.740494	835.466435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.551	1	27.551	27.051	28.051	0								0	0	0	1.7419	1	9028	9028		23.042	0.0057756	1				29785	23173	20355	20427	30176	30176					0.042120686486555314
PSHISPTA	8	Unmodified	_PSHISPTA_					0	0	0			REV__ENST00000381401.10_1_X:1510901-1511015:-|nuORF	REV__ENST00000381401.10_1_X:1510901-1511015:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.8766784667969	2	405.211235	808.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.341	1	41.341	40.841	41.841	0								0	0	0	1.7419	1	15714	15714		25.45	2.4135	1		+		29786	18784	20356	20428	30177	30177					-0.003950327164943701
PSHSRSAHHP	10	Unmodified	_PSHSRSAHHP_					0	0	0		ENST00000585812.5_1_17:59431721-59456358:+|nuORF;ENST00000592702.5_1_17:59431721-59469483:+|nuORF	ENST00000585812.5_1_17:59431721-59456358:+|nuORF	ENST00000585812.5_1_17:59431721-59456358:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.7710571289062	2	556.770845	1111.52714	3.5164	0.0019578	-2.1279	-0.0011847	1.3885	0.0007731	556.7689180430503	11.428	0.07798	11.428	11.385	11.463	0					5	3	2	0	0	0	0.75442	1	2221	2221		12.207	0.69583	1	137780			29787	10898	20357	20429	30178	30178					-0.024164460390466047
PSIEGKLTY	9	Unmodified	_PSIEGKLTY_					0	0	0			REV__SLC9A7|p.E152K|1|0.66|ENSG00000065923|chrX:46682407-46682407|C/T|missense_variant	REV__SLC9A7|p.E152K|1|0.66|ENSG00000065923|chrX:46682407-46682407|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2741394042969	2	504.274032	1006.53351	-0.38728	-0.0001953	1.2873	0.00064913	0.89997	0.00045383	504.2743448566763	42.818	0.22633	42.818	42.746	42.972	0					9	7	2	0	0	0	0.13267	1	17120	17120		71.877	0.58177	1	53327	+		29788	13123	20358	20430	30179	30179					0.030506343490742438
PSILSSGNG	9	Unmodified	_PSILSSGNG_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.2344055175781	2	416.213975	830.413397	-1.4441	-0.00060107	1.2247	0.00050973	-0.21946	-9.1342E-05	416.2144203844771	25.922	0.48496	25.922	25.76	26.245	0					27	12	3	0	0	0	0.41113	1	8066	8066		40.778	1.972	1	289100			29789	6956	20359	20431	30180	30180					-0.008593539246476212
PSKIGTLLK	9	Unmodified	_PSKIGTLLK_					0	0	0			REV__MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	REV__MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.81048583984375	2	478.810585	955.606617	3.4533	0.0016535	-3.0062	-0.0014394	0.44707	0.00021406	478.80900436841785	34.857	0.1135	34.857	34.772	34.886	0					7	5	2	0	0	0	0.054723	1	11769	11769		93.598	0.45434	1	76707	+		29790	16552	20360	20432	30181	30181					0.12703807862374106
PSKIGTLLK	9	Unmodified	_PSKIGTLLK_					0	0	0			REV__MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	REV__MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.8109130859375	2	478.810585	955.606617	0.0084778	4.0593E-06	0.20148	9.6472E-05	0.20996	0.00010053	478.81064583198776	34.834	0.15029	34.834	34.759	34.909	0					14	6	3	0	0	0	0.12278	1	12355	12355		74.165	8.6996	1	188460	+		29791	16552	20360	20432	30182	30182					0.12703807862374106
PSKLSSKRP	9	Unmodified	_PSKLSSKRP_					0	0	0		NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant;ENSG00000074590|ENST00000261402|NUAK1	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	NUAK1|p.P507Rfs*6|1|0.5|ENSG00000074590|chr12:106067268-106067268|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7877197265625	2	500.300916	998.587279	-1.0155	-0.00050806	0.85463	0.00042757	-0.16088	-8.049E-05	500.30119049258667	22.911	0.3085	22.911	22.818	23.126	0					13	10	2	0	0	0	0.55379	1	6877	6877		26.693	0	1	176620			29792	1526	20361	20433	30183	30183					0.08792851571467963
PSKSAKPGPK	10	Unmodified	_PSKSAKPGPK_					0	0	0			REV__ENSG00000187527|ENST00000342358|ATP13A5	REV__ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.86602783203125	3	332.86607	995.57638	1.4968	0.00049823	-1.6602	-0.00055261	-0.16337	-5.4381E-05	332.86551832316593	15.777	0.16101	15.777	15.719	15.88	0					5	3	2	0	0	0	0.6796	1	4393	4393		29.551	0	1	2504700	+		29793	17122	20362	20434	30184	30184					0.07841449197189831
PSLAPGVAEQK	11	Unmodified	_PSLAPGVAEQK_					0	0	0			REV__ENST00000571380.1_1_17:18939269-18950305:-|nuORF	REV__ENST00000571380.1_1_17:18939269-18950305:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8058471679688	2	548.803488	1095.59242	3.7981	0.0020844	0.72437	0.00039754	4.5224	0.0024819	548.8038009479152	26.78	0.41634	26.78	26.469	26.885	0					20	8	4	0	0	0	0.40479	1	9490	9490		51.193	3.5354	1	759760	+		29794	20380	20363	20435	30185	30185					0.04845110643418593
PSLAPHHKY	9	Unmodified	_PSLAPHHKY_					0	0	0			REV__MUC5AC|p.L324Cfs*137|1|0.3|ENSG00000215182|chr11:1164280-1164280|G/-|frameshift_variant	REV__MUC5AC|p.L324Cfs*137|1|0.3|ENSG00000215182|chr11:1164280-1164280|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.281005859375	2	525.279983	1048.54541	-1.2457	-0.00065433	1.8315	0.00096206	0.58584	0.00030773	525.2806298073145	39.497	0.30853	39.497	39.344	39.653	0					22	16	2	0	0	0	0.41113	1	14070	14070		40.778	2.9666	1	48543	+		29795	17595	20364	20436	30186	30186					0.023082958829490963
PSLEGLEKI	9	Unmodified	_PSLEGLEKI_					0	0	0			REV__ENSG00000109452|ENST00000262992|INPP4B	REV__ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.28143310546875	2	493.281857	984.549162	-1.2679	-0.00062545	0.83703	0.00041289	-0.43091	-0.00021256	493.28223936208457	34.248	0.203	34.248	34.162	34.365	0					23	9	3	0	0	0	0.1115	1	11525	11525		76.774	5.4784	1	488340	+		29796	13903	20365	20437	30187	30187					0.056269208661547054
PSLELGHW	8	Unmodified	_PSLELGHW_					0	0	0		nc|ENSG00000169905|Q9H496|TOR1AIP2	nc|ENSG00000169905|Q9H496|TOR1AIP2	nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7379455566406	2	469.74016	937.465767	-1.2157	-0.00057106	-3.4674	-0.0016288	-4.6831	-0.0021998	469.7385157542829	22.265	0.10005	22.265	22.2	22.3	0					5	3	2	0	0	0	0.67475	1	6535	6535		37.028	1.8278	1	98987			29797	11641	20366	20438	30188	30188					-0.005467707910497666
PSLILLHEA	9	Unmodified	_PSLILLHEA_					0	0	0		ENST00000368680.3_1_1:153651158-153651548:+|nuORF	ENST00000368680.3_1_1:153651158-153651548:+|nuORF	ENST00000368680.3_1_1:153651158-153651548:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7906799316406	2	496.792392	991.570232	0.71797	0.00035668	-2.1796	-0.0010828	-1.4617	-0.00072615	496.79139164885885	37.382	0.2125	37.382	37.292	37.504	0					11	6	2	0	0	0	0.51817	1	14201	14201		30.504	5.0535	1	130980			29798	8932	20367	20439	30189	30189					0.07410930965670559
PSLNREEV	8	Unmodified	_PSLNREEV_					0	0	0		ENST00000419769.6_1_10:127430814-127452038:+|nuORF;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1	ENST00000419769.6_1_10:127430814-127452038:+|nuORF	ENST00000419769.6_1_10:127430814-127452038:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2456970214844	2	472.245806	942.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.064	1	22.064	21.564	22.564	0								0	0	0	1.7419	1	6508	6508		29.15	0	1				29799	2505	20368	20440	30190	30190					0.0035200651242348613
PSLQGGPTIM	10	Unmodified	_PSLQGGPTIM_					0	0	0		SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2665100097656	2	500.760235	999.505917	-2.1227	-0.001063	-0.19729	-9.8797E-05	-2.32	-0.0011618	500.7595072664961	26.59	0.50112	26.59	26.319	26.82	0					23	11	4	0	0	0	0.4758	1	8511	8511		47.96	7.1814	1	1225500			29800	22393	20369	20441	30191	30191					0.006144078172155787
PSLSRAMVKE	10	Unmodified	_PSLSRAMVKE_					0	0	0			REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3060913085938	2	559.305341	1116.59613	1.7703	0.00099013	-1.4154	-0.00079163	0.35492	0.00019851	559.3039618590997	37.529	0.20403	37.529	37.455	37.659	0					9	6	2	0	0	0	0.60281	1	14697	14697		33.922	1.1092	1	96305	+		29801	13668	20370	20442	30192	30192					0.04249457145624547
PSNATSPRSST	11	Unmodified	_PSNATSPRSST_					0	0	0		BCL9|p.A150S|1|0.15|ENSG00000116128|chr1:147614504-147614504|G/T|missense_variant	BCL9|p.A150S|1|0.15|ENSG00000116128|chr1:147614504-147614504|G/T|missense_variant	BCL9|p.A150S|1|0.15|ENSG00000116128|chr1:147614504-147614504|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8479919433594	3	368.847515	1103.52072	0.47611	0.00017561	0.54281	0.00020022	1.0189	0.00037583	368.84787447118885	36.858	1.5433	36.858	36.302	37.846	0					117	46	3	0	0	0	0.70609	1	14813	14813		18.966	0	1	279750			29802	290	20371	20443	30193	30193					-0.026904287811021277
PSNLPLLLPA	10	Unmodified	_PSNLPLLLPA_					0	0	0		ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant;ARHGEF10|p.E997Gfs*16|1|0.43|ENSG00000104728|chr8:1928644-1928644|A/-|frameshift_variant;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000522969.1_1_8:1808097-1817553:+|nuORF;ARHGEF10|p.S277Mfs*35|1|0.17|ENSG00000104728|chr8:1876646-1876646|G/-|frameshift_variant	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.835205078125	2	517.815867	1033.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.423	1	34.423	33.923	34.923	0								0	0	0	0.28704	1	12182	12182		52.937	3.4007	1				29803	213	20372	20444	30194	30194					0.1017179051682433
PSPGRYLTPG	10	Unmodified	_PSPGRYLTPG_					0	0	0		ENST00000594684.1_1_19:58264770-58264854:+|nuORF	ENST00000594684.1_1_19:58264770-58264854:+|nuORF	ENST00000594684.1_1_19:58264770-58264854:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.85406494140625	3	348.853941	1043.53999	1.4824	0.00051715	-1.1367	-0.00039653	0.34575	0.00012062	348.8534980866087	35.628	0.21928	35.628	35.518	35.737	0					7	4	2	0	0	0	0.70877	1	13783	13783		20.03	0	1	234040			29804	10990	20373	20445	30195	30195					0.01996572300436128
PSPKKVTAAGA	11	Unmodified	_PSPKKVTAAGA_					0	0	0			REV__ENSG00000104885|ENST00000398665|DOT1L	REV__ENSG00000104885|ENST00000398665|DOT1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.8037109375	2	513.800749	1025.58694	3.1856	0.0016367	2.6231	0.0013478	5.8087	0.0029845	513.8020676290632	11.885	1.3464	11.885	11.797	13.143	0					70	35	4	0	0	0	0.77007	1	2578	2578		20.947	3.582	1	6515600	+		29805	13743	20374	20446	30196	30196					0.07517431851601941
PSPLLTFASQ	10	Unmodified	_PSPLLTFASQ_					0	0	0		ENST00000379328.7_1_10:8097346-8097625:+|nuORF	ENST00000379328.7_1_10:8097346-8097625:+|nuORF	ENST00000379328.7_1_10:8097346-8097625:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7869262695312	2	530.787307	1059.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.395	1	45.395	44.895	45.895	0								0	0	0	0.3598	1	17566	17566		41.427	2.1738	1				29806	9079	20375	20447	30197	30197					0.03266323240427482
PSPPLLGG	8	Unmodified	_PSPPLLGG_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.2120666503906	2	369.213246	736.41194	-0.22503	-8.3084E-05	-3.4338	-0.0012678	-3.6589	-0.0013509	369.2119559152228	42.484	0.49494	42.484	42.307	42.802	0					14	13	2	0	0	0	0.79293	1	17002	17002		15.636	0	1	56165			29807	3172	20376	20448	30198	30198					0.03319056777240803
PSPPVCGG	8	Unmodified	_PSPPVCGG_					0	0	0			REV__ENST00000269321.11_1_17:79826257-79826755:-|nuORF	REV__ENST00000269321.11_1_17:79826257-79826755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.1679382324219	2	357.167982	712.32141	1.4347	0.00051244	-2.1184	-0.00075663	-0.68368	-0.00024419	357.1671674485246	45.565	0.26512	45.565	45.449	45.714	0					25	14	2	0	0	0	0.79176	1	17600	17600		21.702	7.0382	1	137780	+		29808	18094	20377	20449	30199	30199					-0.04625735542686016
PSPPVNGG	8	Unmodified	_PSPPVNGG_					0	0	0		TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B;TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant;TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant;TNRC6B|p.N758Tfs*34|1|0.18|ENSG00000100354|chr22:40266498-40266498|A/-|frameshift_variant;TNRC6B|p.E751Rfs*41|1|0.08|ENSG00000100354|chr22:40266476-40266476|G/-|frameshift_variant;TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant;TNRC6B|p.P111Lfs*29|1|0.35|ENSG00000100354|chr22:40262044-40262044|C/-|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.6846923828125	2	362.684853	723.355153	0.28648	0.0001039	-0.6349	-0.00023027	-0.34842	-0.00012637	362.6846207417231	18.805	0.18903	18.805	18.711	18.9	0					7	4	2	0	0	0	0.8006	1	5834	5834		20.482	3.1169	1	206240			29809	2012;11458	20378	20450	30200	30200					-0.017589907792739723
PSPTQIAR	8	Unmodified	_PSPTQIAR_					0	0	0			REV__ENST00000528737.5_1_11:58912187-58912370:+|nuORF	REV__ENST00000528737.5_1_11:58912187-58912370:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2454528808594	2	435.245609	868.476666	-0.42701	-0.00018586	-0.08252	-3.5916E-05	-0.50953	-0.00022177	435.2455731756085	16.776	0.20921	16.776	16.691	16.9	0					10	5	3	0	0	0	0.24425	1	4623	4623		111.65	8.8749	1	1395600	+		29810	20021	20379	20451	30201	30201					0.03716631583222352
PSPTQIAR	8	Unmodified	_PSPTQIAR_					0	0	0			REV__ENST00000528737.5_1_11:58912187-58912370:+|nuORF	REV__ENST00000528737.5_1_11:58912187-58912370:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2451477050781	2	435.245609	868.476666	0.82764	0.00036023	-1.594	-0.00069377	-0.76633	-0.00033354	435.2449275521824	16.721	0.29998	16.721	16.664	16.964	0					12	6	3	0	0	0	0.24425	1	4845	4845		111.65	8.8749	1	3429500	+		29811	20021	20379	20451	30202	30202					0.03716631583222352
PSQPVVTEITK	11	Unmodified	_PSQPVVTEITK_					0	0	0		ENSG00000154134|ENST00000397801|ROBO3;nc|ENSG00000154134|Q96MS0-2|ROBO3;ROBO3|p.D1059Tfs*9|1|0.29|ENSG00000154134|chr11:124878121-124878121|G/-|frameshift_variant	ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	599.8377685546875	2	599.837528	1197.6605	-0.5744	-0.00034454	0.99468	0.00059665	0.42028	0.0002521	599.838069265031	35.653	0.32342	35.653	35.473	35.796	0					26	16	2	0	0	0	0.64768	1	12046	12046		29.551	10.288	1	109340			29812	5078	20380	20452	30203	30203					0.06957935503419321
PSQPVVTEITK	11	Unmodified	_PSQPVVTEITK_					0	0	0		ENSG00000154134|ENST00000397801|ROBO3;nc|ENSG00000154134|Q96MS0-2|ROBO3;ROBO3|p.D1059Tfs*9|1|0.29|ENSG00000154134|chr11:124878121-124878121|G/-|frameshift_variant	ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.8377685546875	2	599.837528	1197.6605	1.0233	0.00061383	-0.70286	-0.0004216	0.32046	0.00019223	599.8371190958421	35.856	0.56726	35.856	35.49	36.057	0					42	16	3	0	0	0	0.66612	1	13837	13837		41.08	11.529	1	629950			29813	5078	20380	20452	30204	30204					0.06957935503419321
PSQPVVTEITK	11	Unmodified	_PSQPVVTEITK_					0	0	0		ENSG00000154134|ENST00000397801|ROBO3;nc|ENSG00000154134|Q96MS0-2|ROBO3;ROBO3|p.D1059Tfs*9|1|0.29|ENSG00000154134|chr11:124878121-124878121|G/-|frameshift_variant	ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	599.836669921875	2	599.837528	1197.6605	-1.8636	-0.0011179	1.9949	0.0011966	0.13126	7.8737E-05	599.8385356237249	35.693	0.48834	35.693	35.32	35.808	0					29	18	3	0	0	0	0.68335	1	12656	12656		25.892	8.4237	1	117590			29814	5078	20380	20452	30205	30205					0.06957935503419321
PSRAPSRN	8	Unmodified	_PSRAPSRN_					0	0	0			REV__ENST00000483195.5_1_2:74452054-74512997:-|nuORF	REV__ENST00000483195.5_1_2:74452054-74512997:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.73675537109375	2	442.738483	883.462413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.981	1	42.981	42.481	43.481	0								0	0	0	1.7419	1	16842	16842		21.96	1.4781	1		+		29815	17182	20381	20453	30206	30206					0.01601979154941091
PSREQTVL	8	Unmodified	_PSREQTVL_					0	0	0		ENST00000306336.5_2_2:85835211-85835250:-|nuORF	ENST00000306336.5_2_2:85835211-85835250:-|nuORF	ENST00000306336.5_2_2:85835211-85835250:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2563171386719	2	465.256174	928.497795	-0.51542	-0.0002398	0.23097	0.00010746	-0.28445	-0.00013234	465.25643681126576	16.809	0.11717	16.809	16.741	16.859	0					6	3	2	0	0	0	0.72381	1	4073	4073		30.504	0	1	80082			29816	8519	20382	20454	30207	30207					0.03068596892092046
PSRFGQTCPL	10	Unmodified	_PSRFGQTCPL_					0	0	0		nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF	nc|ENSG00000159263|Q14190-2|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.275390625	2	553.276583	1104.53861	1.606	0.00088855	-3.2113	-0.0017767	-1.6053	-0.00088818	553.2745754102211	40.711	0.25588	40.711	40.671	40.927	0					9	5	2	0	0	0	0.52275	1	16067	16067		42.864	0	1	107110			29817	9955	20383	20455	30208	30208					-0.009473850599533762
PSRLSDTTK	9	Unmodified	_PSRLSDTTK_					0	0	0		ENST00000575977.1_1_17:1268334-1303424:-|nuORF	ENST00000575977.1_1_17:1268334-1303424:-|nuORF	ENST00000575977.1_1_17:1268334-1303424:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7721252441406	2	502.772188	1003.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.313	1	15.313	14.813	15.813	0								0	0	0	0.20989	1	3927	3927		49.536	1.6204	1				29818	10827	20384	20456	30209	30209					0.0281996457523519
PSRLTVSRK	9	Unmodified	_PSRLTVSRK_					0	0	0		ENST00000590564.5_1_19:30787074-30787137:+|nuORF	ENST00000590564.5_1_19:30787074-30787137:+|nuORF	ENST00000590564.5_1_19:30787074-30787137:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.54876708984375	3	348.548852	1042.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.684	1	17.684	17.184	18.184	0								0	0	0	0.27939	1	4480	4480		54.722	12.384	1				29819	10951	20385	20457	30210	30210					0.1051194283706991
PSRPAIPTLT	10	Unmodified	_PSRPAIPTLT_					0	0	0			REV__ELK1|p.S383T|1|0.19|ENSG00000126767|chrX:47637053-47637053|C/G|missense_variant	REV__ELK1|p.S383T|1|0.19|ENSG00000126767|chrX:47637053-47637053|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.8090209960938	2	526.808574	1051.60259	1.7065	0.000899	-0.76202	-0.00040144	0.94447	0.00049756	526.8081340864442	24.617	0.19904	24.617	24.518	24.717	0					7	4	2	0	0	0	0.56099	1	7695	7695		41.427	6.2746	1	102450	+		29820	12790	20386	20458	30211	30211					0.07885718368652306
PSRPEVPN	8	Unmodified	_PSRPEVPN_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.23724365234375	2	448.235242	894.45593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.125	1	40.125	39.625	40.625	0								0	0	0	1.7419	1	15295	15295		35.618	5.1146	1				29821	1433	20387	20459	30212	30212					0.004480412035718473
PSRPSEAREP	10	Unmodified	_PSRPSEAREP_					0	0	0		NPPC|p.G112Rfs*?|1|0.41|ENSG00000163273|chr2:231925473-231925474|-/A|frameshift_variant	NPPC|p.G112Rfs*?|1|0.41|ENSG00000163273|chr2:231925473-231925474|-/A|frameshift_variant	NPPC|p.G112Rfs*?|1|0.41|ENSG00000163273|chr2:231925473-231925474|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	375.8597412109375	3	375.859755	1124.55744	0.71536	0.00026887	-0.92867	-0.00034905	-0.21331	-8.0176E-05	375.8594508938821	19.518	0.36292	19.518	19.463	19.826	0					12	7	2	0	0	0	0.60076	1	6198	6198		38.754	9.6041	1	3798200			29822	11862	20388	20460	30213	30213					0.00013867835468772682
PSRQTNTSY	9	Unmodified	_PSRQTNTSY_					0	0	0		ENST00000606225.1_1_15:64464132-64481629:-|nuORF	ENST00000606225.1_1_15:64464132-64481629:-|nuORF	ENST00000606225.1_1_15:64464132-64481629:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2538452148438	2	527.25162	1052.48869	3.472	0.0018306	1.1625	0.00061293	4.6345	0.0024436	527.252086144965	25.238	0.36796	25.238	24.979	25.347	0					15	7	3	0	0	0	0.51817	1	8824	8824		30.504	0.6621	1	742650			29823	11079	20389	20461	30214	30214					-0.035457964642318984
PSRQVAQPS	9	Unmodified	_PSRQVAQPS_					0	0	0			REV__ENST00000564460.2_1_16:952344-953654:-|nuORF	REV__ENST00000564460.2_1_16:952344-953654:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2591552734375	2	485.259248	968.503943	0.84741	0.00041121	-1.4915	-0.00072376	-0.64408	-0.00031255	485.2585709521465	12.956	0.19564	12.956	12.822	13.018	0					7	4	2	0	0	0	0.33044	1	2907	2907		47.657	0	1	118530	+		29824	20324	20390	20462	30215	30215					0.018431151236200094
PSRRLDEWGR	10	Unmodified	_PSRRLDEWGR_					0	0	0			REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.5574645996094	3	424.558299	1270.65307	-0.31661	-0.00013442	-2.4348	-0.0010337	-2.7514	-0.0011681	424.5572068307127	27.279	0.26652	27.279	27.072	27.338	0					9	5	2	0	0	0	0.65051	1	9855	9855		28.081	0	1	155280	+		29825	20679	20391	20463	30216	30216					0.0285664074633587
PSRTPFEEVL	10	Unmodified	_PSRTPFEEVL_					0	0	0			REV__ENST00000354869.7_1_22:51206987-51207044:-|nuORF	REV__ENST00000354869.7_1_22:51206987-51207044:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.2082214355469	3	392.208273	1173.60299	0.45934	0.00018016	-0.49307	-0.00019338	-0.03373	-1.3229E-05	392.2080809919563	27.854	0.96132	27.854	27.746	28.707	0					42	19	4	0	0	0	0.24256	1	10028	10028		66.962	12.186	1	6156200	+		29826	18503	20392	20464	30217	30217					0.023130932978574492
PSRWVEAR	8	Unmodified	_PSRWVEAR_					0	0	0			REV__ENST00000229329.6_1_12:22199202-22199379:+|nuORF	REV__ENST00000229329.6_1_12:22199202-22199379:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.77105712890625	2	500.769783	999.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.91	1	20.91	20.41	21.41	0								0	0	0	1.7419	1	5969	5969		41.427	2.1738	1		+		29827	17910	20393	20465	30218	30218					0.025231252231378676
PSRYALTI	8	Unmodified	_PSRYALTI_					0	0	0		ENST00000488342.5_1_2:165365032-165477819:-|nuORF	ENST00000488342.5_1_2:165365032-165477819:-|nuORF	ENST00000488342.5_1_2:165365032-165477819:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.76336669921875	2	460.763635	919.512717	0.72243	0.00033287	-1.9953	-0.00091934	-1.2728	-0.00058647	460.7627225375974	32.925	0.34982	32.925	32.759	33.109	0					14	8	2	0	0	0	0.29286	1	12542	12542		84.916	2.675	1	997240			29828	10045	20394	20466	30219	30219					0.04974088760093309
PSSAPPPLAA	10	Unmodified	_PSSAPPPLAA_					0	0	0			REV__KRTAP10-9|p.C95Afs*?|1|0.23|ENSG00000221837|chr21:44627449-44627449|C/-|frameshift_variant	REV__KRTAP10-9|p.C95Afs*?|1|0.23|ENSG00000221837|chr21:44627449-44627449|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.24920654296875	2	454.247818	906.481082	2.507	0.0011388	-2.9984	-0.001362	-0.49146	-0.00022324	454.2495808743937	26.527	0.51925	26.527	26.117	26.637	0					22	10	4	0	0	0	0.51121	1	9394	9394		44.117	0	1	1020200	+		29829	20800	20395	20467	30220	30220					0.024100960061332444
PSSCGLGRM	9	Unmodified	_PSSCGLGRM_					0	0	0			REV__ENST00000301490.8_2_11:67395419-67395788:-|nuORF	REV__ENST00000301490.8_2_11:67395419-67395788:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2121887207031	2	454.209855	906.405157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.915	1	31.915	31.415	32.415	0								0	0	0	0.27025	1	11042	11042		40.778	3.6191	1		+		29830	18205	20396	20468	30221	30221					-0.05178947437286752
PSSHPVSLN	9	Unmodified	_PSSHPVSLN_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.240234375	2	469.240524	936.466495	-0.52219	-0.00024503	-0.081957	-3.8458E-05	-0.60415	-0.00028349	469.2406152904753	21.497	0.16584	21.497	21.437	21.603	0					8	3	3	0	0	0	0.27249	1	7020	7020		52.937	3.4007	1	437610			29831	2848	20397	20469	30222	30222					-0.00427976141986619
PSSLTNVAK	9	Unmodified	_PSSLTNVAK_					0	0	0			REV__ENST00000540458.5_1_12:6956031-6956169:+|nuORF	REV__ENST00000540458.5_1_12:6956031-6956169:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7581787109375	2	458.758549	915.502546	0.065053	2.9843E-05	0.064445	2.9565E-05	0.1295	5.9408E-05	458.7583481006112	16.385	0.13799	16.385	16.32	16.458	0					8	5	2	0	0	0	0.48389	1	3708	3708		34.173	0.25091	1	103560	+		29832	20130	20398	20470	30223	30223					0.041414810348555875
PSSNVREY	8	Unmodified	_PSSNVREY_					0	0	0		nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3	nc|ENSG00000198300|Q9GZU2-2|PEG3	nc|ENSG00000198300|Q9GZU2-2|PEG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.232666015625	2	476.230156	950.445759	3.5461	0.0016888	0.37553	0.00017884	3.9216	0.0018676	476.23036024565096	34.387	0.41888	34.387	34.271	34.69	0					43	18	4	0	0	0	0.6088	1	11574	11574		47.657	5.2612	1	832600			29833	7547	20399	20471	30224	30224					-0.031445665216665475
PSSPASSQF	9	Unmodified	_PSSPASSQF_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2109680175781	2	454.211432	906.408311	0.0026502	1.2038E-06	-0.24556	-0.00011154	-0.24291	-0.00011033	454.21129711344423	31.842	0.20543	31.842	31.757	31.962	0					14	8	2	0	0	0	0.30951	1	10238	10238		49.442	5.3247	1	129540			29834	321	20400	20472	30225	30225					-0.048636577872798625
PSSPASSQF	9	Unmodified	_PSSPASSQF_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2110900878906	2	454.211432	906.408311	0.70904	0.00032205	-1.4551	-0.00066091	-0.74602	-0.00033885	454.2108819361919	32.142	0.33451	32.142	32.018	32.353	0					18	8	3	0	0	0	0.14603	1	11762	11762		68.787	2.3575	1	1027300			29835	321	20400	20472	30226	30226					-0.048636577872798625
PSSPASSQF	9	Unmodified	_PSSPASSQF_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2112731933594	2	454.211432	906.408311	-0.42023	-0.00019088	-0.51445	-0.00023367	-0.93468	-0.00042454	454.2113217612057	32.076	0.36931	32.076	31.969	32.338	0					16	7	3	0	0	0	0.13519	1	12047	12047		71.296	10.324	1	990560			29836	321	20400	20472	30227	30227					-0.048636577872798625
PSSPGPHPNPP	11	Unmodified	_PSSPGPHPNPP_					0	0	0			REV__ENSG00000178718|ENST00000322177|RPP25	REV__ENSG00000178718|ENST00000322177|RPP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.2640991210938	2	542.26453	1082.51451	-0.16497	-8.9459E-05	-1.9806	-0.001074	-2.1456	-0.0011635	542.7649376936978	17.611	0.14089	17.611	17.516	17.657	0					9	4	3	0	0	0	0.78699	1	4444	4444		9.1829	0	1	80091	+		29837	16741	20401	20473	30228	30228					-0.023449022219665494
PSSQAVQPLQR	11	Unmodified	_PSSQAVQPLQR_					0	0	0			REV__ENST00000515209.5_1_5:176759089-176761331:-|nuORF	REV__ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	605.8314208984375	2	605.830569	1209.64658	0.44174	0.00026762	-0.49272	-0.0002985	-0.050979	-3.0885E-05	605.8303717379532	24.68	0.5022	24.68	24.467	24.969	0					20	11	3	0	0	0	0.70609	1	7688	7688		27.047	0	1	366840	+		29838	19908	20402	20474	30229	30229					0.0501470279498335
PSSSFRLSL	9	Unmodified	_PSSSFRLSL_					0	0	0			REV__ENST00000360525.8_1_21:38444831-38445389:-|nuORF	REV__ENST00000360525.8_1_21:38444831-38445389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7737121582031	2	497.271824	992.529095	-1.3643	-0.00067843	2.3885	0.0011877	1.0242	0.00050929	497.2731038983209	35.339	0.11578	35.339	35.279	35.395	0					8	5	2	0	0	0	0.46194	1	11953	11953		36.447	2.2742	1	44363	+		29839	18556	20403	20475	30230	30230					0.03253169926199462
PSSSSLHPLP	10	Unmodified	_PSSSSLHPLP_					0	0	0		ENST00000551296.5_1_12:56330167-56330479:+|nuORF;ENST00000548479.1_1_12:56325089-56330479:+|nuORF	ENST00000551296.5_1_12:56330167-56330479:+|nuORF	ENST00000551296.5_1_12:56330167-56330479:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7943115234375	2	511.269281	1020.52401	-0.4371	-0.00022347	0.12788	6.5379E-05	-0.30922	-0.00015809	511.2692868619643	32.117	0.39829	32.117	31.827	32.225	0					17	8	3	0	0	0	0.46215	1	12106	12106		49.442	6.5773	1	174020			29840	10625	20404	20476	30231	30231					0.0145686606357458
PSSSSQLGLQ	10	Unmodified	_PSSSSQLGLQ_					0	0	0		ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7587890625	2	502.256371	1002.49819	-0.070569	-3.5444E-05	3.3469	0.001681	3.2763	0.0016455	502.7591813806784	15.624	0.17652	15.624	15.52	15.697	0					16	4	5	0	0	0	0.58189	1	4077	4077		36.447	3.6343	1	308270			29841	9402	20405	20477	30232	30232					-0.0029602817870681974
PSSSSSLQKSR	11	Unmodified	_PSSSSSLQKSR_					0	0	0		ENST00000551592.5_1_12:48474253-48490186:-|nuORF;ENST00000547181.5_1_12:48482540-48495255:-|nuORF;nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1	ENST00000551592.5_1_12:48474253-48490186:-|nuORF	ENST00000551592.5_1_12:48474253-48490186:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.3055419921875	2	582.304384	1162.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.207	1	15.207	14.707	15.707	0								0	0	0	0.45674	1	3419	3419		16.717	1.8525	1				29842	1620	20406	20478	30233	30233					0.019421196613848224
PSSSVVLLR	9	Unmodified	_PSSSVVLLR_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2899169921875	2	479.290017	956.565481	-0.46886	-0.00022472	0.64718	0.00031019	0.17833	8.547E-05	479.29020249682037	19.455	0.21351	19.455	19.297	19.511	0					9	4	3	0	0	0	0.0792	1	6167	6167		84.916	5.4645	1	241810	+		29843	16789	20407	20479	30234	30234					0.08546046822903008
PSSSWSSVA	9	Unmodified	_PSSSWSSVA_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2109680175781	2	454.211432	906.408311	-0.12819	-5.8223E-05	-0.26118	-0.00011863	-0.38936	-0.00017685	454.21149092064854	32.149	0.30444	32.149	32.001	32.306	0					13	6	3	0	0	0	0.087582	1	12160	12160		82.305	11.009	1	886450			29844	5512	20408	20480	30235	30235					-0.048636577872798625
PSSVQLLVT	9	Unmodified	_PSSVQLLVT_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.27728271484375	2	472.276575	942.538597	-1.4449	-0.0006824	1.3541	0.00063949	-0.090849	-4.2906E-05	472.2772041597766	25.993	0.52539	25.993	25.76	26.286	0					19	13	2	0	0	0	0.41113	1	8103	8103		40.778	0	1	207310			29845	1023	20409	20481	30236	30236					0.06502938211735909
PSSVRGGEHPA	11	Unmodified	_PSSVRGGEHPA_					0	0	0			REV__ENSG00000100167|ENST00000644076|SEPTIN3	REV__ENSG00000100167|ENST00000644076|SEPTIN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.27294921875	2	547.272887	1092.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.1	1	15.1	14.6	15.6	0								0	0	0	0.45674	1	4061	4061		23.523	0	1		+		29846	13520	20410	20482	30237	30237					-0.011344013359803284
PSSVWLPQ	8	Unmodified	_PSSVWLPQ_					0	0	0			REV__ENST00000524486.5_1_11:802912-803251:-|nuORF	REV__ENST00000524486.5_1_11:802912-803251:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2419738769531	2	457.242535	912.470518	-0.39603	-0.00018108	-0.11364	-5.1962E-05	-0.50968	-0.00023305	457.24245406348615	36.169	0.3015	36.169	36.079	36.381	0					35	15	3	0	0	0	0.49887	1	11852	11852		60.294	2.4827	1	419490	+		29847	19978	20411	20483	30238	30238					0.010781133517184571
PSTHPWVQ	8	Unmodified	_PSTHPWVQ_					0	0	0			REV__ENST00000303391.10_2_X:153295129-153295291:-|nuORF	REV__ENST00000303391.10_2_X:153295129-153295291:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7396240234375	2	476.237784	950.461016	-0.38201	-0.00018193	0.1835	8.7388E-05	-0.19851	-9.4538E-05	476.23783862071855	36.727	0.47791	36.727	36.581	37.059	0					46	21	3	0	0	0	0.67394	1	13112	13112		37.159	5.2042	1	665350	+		29848	18220	20412	20484	30239	30239					-0.016196549338019395
PSTILHEL	8	Unmodified	_PSTILHEL_					0	0	0			REV__ENST00000504041.1_1_5:179754-182435:+|nuORF	REV__ENST00000504041.1_1_5:179754-182435:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.25555419921875	2	455.255643	908.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.838	1	37.838	37.338	38.338	0								0	0	0	1.7419	1	14822	14822		53.351	0	1		+		29849	19824	20413	20485	30240	30240					0.03882382523170236
PSTLGGRGGKI	11	Unmodified	_PSTLGGRGGKI_					0	0	0		AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|9|3|sense	AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|9|3|sense	AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|9|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.8034057617188	2	521.803823	1041.59309	1.0582	0.0005522	-0.66873	-0.00034894	0.38952	0.00020325	521.803203608757	20.092	0.090199	20.092	20.051	20.141	0					4	2	2	0	0	0	0.55715	1	5599	5599		40.058	0.80534	1	77549			29850	131	20414	20486	30241	30241					0.07395950083150638
PSTNPLAPPGP	11	Unmodified	_PSTNPLAPPGP_					0	0	0			REV__ENST00000422163.5_1_3:50296096-50296255:+|nuORF	REV__ENST00000422163.5_1_3:50296096-50296255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2800903320312	2	524.277106	1046.53966	0.56282	0.00029507	1.2771	0.00066953	1.8399	0.00096461	524.2778255378446	31.794	0.3363	31.794	31.657	31.994	0					33	13	3	0	0	0	0.58789	1	10549	10549		37.812	8.662	1	488120	+		29851	19086	20415	20487	30242	30242					0.01825152580613576
PSVDPETVL	9	Unmodified	_PSVDPETVL_					0	0	0		SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant;ENSG00000187231|ENST00000428443|SESTD1	SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant	SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7512512207031	2	478.75039	955.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.423	1	39.423	38.923	39.923	0								0	0	0	0.28996	1	14052	14052		37.159	7.3176	1				29852	7187	20416	20488	30243	30243					0.006703550781026024
PSVEKKER	8	Unmodified	_PSVEKKER_					0	0	0			REV__ENST00000587366.1_1_18:55280911-55288994:-|nuORF	REV__ENST00000587366.1_1_18:55280911-55288994:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.781005859375	2	486.777274	971.539994	0.0061424	2.99E-06	2.7145	0.0013214	2.7207	0.0013244	486.7786741955726	19.799	0.34574	19.799	19.517	19.862	0					18	10	2	0	0	0	0.59773	1	5108	5108		49.442	1.7842	1	351860	+		29853	20492	20417	20489	30244	30244					0.05308572300475589
PSVENKSL	8	Unmodified	_PSVENKSL_					0	0	0		ENST00000231368.9_1_5:96349439-96349490:+|nuORF	ENST00000231368.9_1_5:96349439-96349490:+|nuORF	ENST00000231368.9_1_5:96349439-96349490:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.237060546875	2	437.23745	872.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.27	1	35.27	34.77	35.77	0								0	0	0	1.7419	1	12555	12555		52.937	0	1				29854	8202	20418	20490	30245	30245					0.019015056264720442
PSVGHPGRL	9	Unmodified	_PSVGHPGRL_					0	0	0			REV__ENST00000484848.5_1_10:102255105-102258991:-|nuORF	REV__ENST00000484848.5_1_10:102255105-102258991:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.25830078125	2	460.259051	918.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.748	1	24.748	24.248	25.248	0								0	0	0	0.28996	1	7351	7351		37.159	1.9584	1		+		29855	13241	20419	20491	30246	30246					0.041037401944208796
PSVLIGVE	8	Unmodified	_PSVLIGVE_					0	0	0			REV__ENSG00000163376|ENST00000417314|KBTBD8	REV__ENSG00000163376|ENST00000417314|KBTBD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.2401428222656	2	407.239461	812.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.227	1	26.227	25.727	26.727	0								0	0	0	1.7419	1	7941	7941		24.203	5.8783	1		+		29856	15878	20420	20492	30247	30247					0.05063595120202535
PSWGDQAL	8	Unmodified	_PSWGDQAL_					0	0	0		ENST00000600328.7_1_19:18376706-18377168:-|nuORF	ENST00000600328.7_1_19:18376706-18377168:-|nuORF	ENST00000600328.7_1_19:18376706-18377168:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2099609375	2	437.208692	872.402832	2.6737	0.001169	0.1505	6.58E-05	2.8242	0.0012348	437.2089047157455	37.442	0.30988	37.442	37.332	37.642	0					17	6	4	0	0	0	0.60719	1	14625	14625		47.916	47.916	1	806650			29857	11031	20421	20493	30248	30248					-0.03847336579099192
PSWGEPCAQTA	11	Unmodified	_PSWGEPCAQTA_					0	0	0			REV__ENSG00000082684|ENST00000357599|SEMA5B	REV__ENSG00000082684|ENST00000357599|SEMA5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.7890014648438	2	573.747856	1145.48116	-0.15661	-8.9857E-05	0.83462	0.00047886	0.67801	0.00038901	574.250183635495	15.408	0.21118	15.408	15.306	15.517	0					10	4	4	0	0	0	0.74306	1	4222	4222		23.523	0	1	270520	+		29858	13321	20422	20494	30249	30249					-0.08576272056188827
PSYAISLIFK	10	Unmodified	_PSYAISLIFK_					0	0	0			REV__ENSG00000140395|ENST00000267973|SKIC8	REV__ENSG00000140395|ENST00000267973|SKIC8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.8295288085938	2	569.828975	1137.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.407	1	39.407	38.907	39.907	0								0	0	0	0.38825	1	15572	15572		36.447	0	1		+		29859	15074	20423	20495	30250	30250					0.08008059688290814
PSYWTPGQTR	10	Unmodified	_PSYWTPGQTR_					0	0	0		ENST00000581398.1_1_4:1245404-1245611:+|nuORF;ENST00000578730.1_1_4:1245335-1281818:+|nuORF	ENST00000581398.1_1_4:1245404-1245611:+|nuORF	ENST00000581398.1_1_4:1245404-1245611:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.7897338867188	2	596.790912	1191.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.1	1	39.1	38.6	39.6	0								0	0	0	0.39665	1	14874	14874		31.53	0	1				29860	10855	20424	20496	30251	30251					-0.020849441591508366
PTAAAAPAAAA	11	Unmodified	_PTAAAAPAAAA_					0	0	0			REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.7371520996094	2	441.737617	881.460681	-1.1003	-0.00048604	0.62014	0.00027394	-0.48016	-0.0002121	441.7379494338019	20.329	0.89124	20.329	19.706	20.597	0					45	29	2	0	0	0	0.3828	1	5635	5635		53.351	3.9099	1	129150	+		29861	19094	20425	20497	30252	30252					0.015209253463012828
PTAAAAPAAAA	11	Unmodified	_PTAAAAPAAAA_					0	0	0			REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.7373046875	2	441.737617	881.460681	-0.29228	-0.00012911	-0.17818	-7.8708E-05	-0.47046	-0.00020782	441.7375189392239	20.583	1.5671	20.583	19.231	20.798	0					73	31	3	0	0	0	0.15695	1	6682	6682		79.451	15.244	1	805490	+		29862	19094	20425	20497	30253	30253					0.015209253463012828
PTAAAAPAAAA	11	Unmodified	_PTAAAAPAAAA_					0	0	0			REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.7375793457031	2	441.737617	881.460681	0.38418	0.00016971	-0.22896	-0.00010114	0.15522	6.8567E-05	441.7374571921942	20.477	1.0894	20.477	19.587	20.677	0					48	25	3	0	0	0	0.3828	1	5685	5685		53.351	0.41475	1	211740	+		29863	19094	20425	20497	30254	30254					0.015209253463012828
PTAAAAPAAAA	11	Unmodified	_PTAAAAPAAAA_					0	0	0			REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.73760986328125	2	441.737617	881.460681	-0.53793	-0.00023762	0.21965	9.7028E-05	-0.31828	-0.0001406	441.73765565970007	20.483	0.95702	20.483	19.703	20.66	0					49	22	3	0	0	0	0.33433	1	5737	5737		58.782	0.55203	1	294990	+		29864	19094	20425	20497	30255	30255					0.015209253463012828
PTAAPRDLPP	10	Unmodified	_PTAAPRDLPP_					0	0	0		ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.5246887207031	3	345.525825	1033.55564	-0.77554	-0.00026797	-3.5287	-0.0012193	-4.3042	-0.0014872	345.5248614842848	22.282	0.34334	22.282	22.168	22.511	0					19	10	3	0	0	0	0.65051	1	6531	6531		28.081	1.0342	1	239560			29865	7302	20426	20498	30256	30256					0.040208588175119075
PTALDCWDTR	10	Carbamidomethyl (C)	_PTALDC(Carbamidomethyl (C))WDTR_	PTALDC(1)WDTR		PTALDC(67)WDTR		0	1	0		ENST00000237536.8_2_20:35414273-35414927:-|nuORF	ENST00000237536.8_2_20:35414273-35414927:-|nuORF	ENST00000237536.8_2_20:35414273-35414927:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.1900634765625	3	412.188884	1233.54482	0.63854	0.0002632	1.6519	0.0006809	2.2904	0.00094409	412.18975215263936	24.656	0.22855	24.656	24.579	24.808	0					11	6	3	0	0	0	0.30252	1	7308	7308		66.962	32.461	1	423810			29866	8210	20427	20499	30257	30257	361				-0.06260911619096987
PTAPLPAEPA	10	Unmodified	_PTAPLPAEPA_					0	0	0		ENSG00000088808|ENST00000202556|PPP1R13B;ENST00000555391.5_1_14:104201493-104210315:-|nuORF	ENSG00000088808|ENST00000202556|PPP1R13B	ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.26104736328125	2	482.260925	962.507297	0.15972	7.7024E-05	-0.33364	-0.0001609	-0.17392	-8.3875E-05	482.2606642572537	28.871	0.23393	28.871	28.764	28.998	0					8	5	2	0	0	0	0.60076	1	9626	9626		34.173	0	1	57846			29867	1783	20428	20500	30258	30258					0.024543651776070874
PTAQPRAPSM	10	Unmodified	_PTAQPRAPSM_					0	0	0		MED25|p.G363R|1|0.21|ENSG00000104973|chr19:49830873-49830873|G/A|missense_variant	MED25|p.G363R|1|0.21|ENSG00000104973|chr19:49830873-49830873|G/A|missense_variant	MED25|p.G363R|1|0.21|ENSG00000104973|chr19:49830873-49830873|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2691040039062	2	528.268758	1054.52296	2.1802	0.0011517	-1.6124	-0.00085176	0.56781	0.00029996	528.2681460680681	27.969	0.59151	27.969	27.501	28.092	0					20	14	2	0	0	0	0.56931	1	9845	9845		37.812	4.9991	1	260060			29868	11356	20429	20501	30259	30259					-0.002116715769716393
PTASTKGSR	9	Unmodified	_PTASTKGSR_					0	0	0		nc|ENSG00000284862|Q9UFE4|CCDC39	nc|ENSG00000284862|Q9UFE4|CCDC39	nc|ENSG00000284862|Q9UFE4|CCDC39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2498779296875	2	452.745973	903.477394	0.34354	0.00015553	3.4417	0.0015582	3.7852	0.0017138	452.7473608402289	26.17	0.18063	26.17	26.052	26.233	0					7	4	2	0	0	0	0.53064	1	8386	8386		29.17	4.6509	1	56829			29869	11820	20430	20502	30260	30260					0.021794262322941904
PTATSPVVY	9	Unmodified	_PTATSPVVY_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.74774169921875	2	467.74765	933.480748	-0.50913	-0.00023814	1.0596	0.00049561	0.55044	0.00025747	467.7479239656054	40.994	0.15519	40.994	40.892	41.047	0					5	3	2	0	0	0	0.23186	1	16287	16287		57.811	6.4758	1	63922			29870	11866	20431	20503	30261	30261					0.011346762862785909
PTCRECGKTF	10	Unmodified	_PTCRECGKTF_					0	0	0		ZNF18|p.H426Sfs*40|1|0.31|ENSG00000154957|chr17:11978331-11978332|-/A|frameshift_variant;nc|ENSG00000154957|P17022-2|ZNF18;ENSG00000154957|ENST00000580306|ZNF18	ZNF18|p.H426Sfs*40|1|0.31|ENSG00000154957|chr17:11978331-11978332|-/A|frameshift_variant	ZNF18|p.H426Sfs*40|1|0.31|ENSG00000154957|chr17:11978331-11978332|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.26025390625	2	571.260076	1140.5056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.426	1	24.426	23.926	24.926	0								0	0	0	0.41967	1	7208	7208		24.519	0.31644	1				29871	5109	20432	20504	30262	30262					-0.05903335174298263
PTDGVVRPPPG	11	Unmodified	_PTDGVVRPPPG_					0	0	0		ENST00000532940.5_1_8:144921262-144922356:-|nuORF	ENST00000532940.5_1_8:144921262-144922356:-|nuORF	ENST00000532940.5_1_8:144921262-144922356:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.295166015625	2	546.29583	1090.57711	-0.24653	-0.00013468	-1.8655	-0.0010191	-2.1121	-0.0011538	546.2951353610905	21.151	0.11073	21.151	21.082	21.193	0					5	3	2	0	0	0	0.42875	1	6017	6017		49.442	9.3834	1	185450			29872	10456	20433	20505	30263	30263					0.03544243846226891
PTDGVVRPPPG	11	Unmodified	_PTDGVVRPPPG_					0	0	0		ENST00000532940.5_1_8:144921262-144922356:-|nuORF	ENST00000532940.5_1_8:144921262-144922356:-|nuORF	ENST00000532940.5_1_8:144921262-144922356:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2951049804688	2	546.29583	1090.57711	0.33528	0.00018316	-3.2306	-0.0017649	-2.8954	-0.0015817	546.2945048033316	21.349	0.21746	21.349	21.24	21.458	0					10	4	3	0	0	0	0.22009	1	7053	7053		71.877	9.7701	1	999940			29873	10456	20433	20505	30264	30264					0.03544243846226891
PTDIIDRY	8	Unmodified	_PTDIIDRY_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP	REV__ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.75506591796875	2	496.756007	991.497461	-1.1713	-0.00058185	-1.4203	-0.00070553	-2.5916	-0.0012874	496.7550068148338	21.389	0.20461	21.389	21.316	21.52	0					15	6	3	0	0	0	0.69548	1	6126	6126		34.173	3.8548	1	264200	+		29874	17039;15308	20434	20506	30265	30265					0.0013717717223471482
PTDKLGLI	8	Unmodified	_PTDKLGLI_					0	0	0		ENST00000547657.1_1_21:37741970-37758388:+|nuORF	ENST00000547657.1_1_21:37741970-37758388:+|nuORF	ENST00000547657.1_1_21:37741970-37758388:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.7679443359375	2	428.760561	855.506569	0.94896	0.00040688	2.5058	0.0010744	3.4548	0.0014813	428.76051666013075	34.412	0.84312	34.412	33.997	34.84	0					58	21	4	0	0	0	0.39542	1	13324	13324		71.378	2.5911	1	3293400			29875	10589	20435	20507	30266	30266					0.07303570528563341
PTDNAQDFYD	10	Unmodified	_PTDNAQDFYD_					0	0	0		POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant;ENSG00000127948|ENST00000461988|POR	POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.2386474609375	2	593.238375	1184.4622	1.5337	0.00090982	-2.0146	-0.0011951	-0.48092	-0.0002853	593.2377128227777	16.072	0.11586	16.072	16.013	16.128	0					8	2	4	0	0	0	0.34667	1	4535	4535		62.107	7.3311	1	883630			29876	3522	20436	20508	30267	30267					-0.12265530146237325
PTEAGTICRF	10	Unmodified	_PTEAGTICRF_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7699584960938	2	547.768591	1093.52263	3.837	0.0021018	-2.5118	-0.0013759	1.3252	0.00072593	547.7673380287408	47.027	0.16862	47.027	46.933	47.102	0					11	8	2	0	0	0	0.61187	1	18798	18798		32.812	0.85756	1	47209			29877	2113	20437	20509	30268	30268					-0.02039091296865081
PTEARQNAP	9	Unmodified	_PTEARQNAP_					0	0	0			REV__YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	REV__YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2486267089844	2	492.24888	982.483208	-0.073522	-3.6191E-05	-0.2346	-0.00011548	-0.30812	-0.00015167	492.2488717869737	22.591	0.16367	22.591	22.494	22.657	0					10	5	3	0	0	0	0.55379	1	6414	6414		26.693	3.6504	1	151520	+		29878	15927	20438	20510	30269	30269					-0.008734752560485504
PTEGPHVQ	8	Unmodified	_PTEGPHVQ_					0	0	0			REV__AGBL4|p.R228Q|1|0.36|ENSG00000186094|chr1:48663193-48663193|C/T|missense_variant	REV__AGBL4|p.R228Q|1|0.36|ENSG00000186094|chr1:48663193-48663193|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.7143249511719	2	432.714142	863.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.154	1	17.154	16.654	17.654	0								0	0	0	1.7419	1	5045	5045		55.504	5.4797	1		+		29879	12106	20439	20511	30270	30270					-0.023439342047936407
PTFCGKSK	8	Unmodified	_PTFCGKSK_					0	0	0			REV__ENSG00000064218|ENST00000190165|DMRT3	REV__ENSG00000064218|ENST00000190165|DMRT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.2212219238281	2	434.223288	866.432024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.262	1	24.262	23.762	24.762	0								0	0	0	1.7419	1	7403	7403		24.203	0	1		+		29880	13101	20440	20512	30271	30271					-0.006535155544611371
PTFKVKVSKK	10	Unmodified	_PTFKVKVSKK_					0	0	0			REV__TMEM131|p.E934K|1|0.09|ENSG00000075568|chr2:97797435-97797435|C/T|missense_variant	REV__TMEM131|p.E934K|1|0.09|ENSG00000075568|chr2:97797435-97797435|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.91644287109375	3	387.916653	1160.72813	0.16401	6.3621E-05	-0.47257	-0.00018332	-0.30856	-0.0001197	387.91634257349614	23.365	0.21645	23.365	23.263	23.479	0					9	4	3	0	0	0	0.45669	1	8032	8032		50.034	22.986	1	400120	+		29881	13238	20441	20513	30272	30272					0.15419430224869757
PTFKVKVSKK	10	Unmodified	_PTFKVKVSKK_					0	0	0			REV__TMEM131|p.E934K|1|0.09|ENSG00000075568|chr2:97797435-97797435|C/T|missense_variant	REV__TMEM131|p.E934K|1|0.09|ENSG00000075568|chr2:97797435-97797435|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.3721923828125	2	581.371341	1160.72813	-0.34845	-0.00020258	1.4609	0.00084933	1.1125	0.00064675	581.3724893143142	23.336	0.16576	23.336	23.229	23.395	0					6	3	2	0	0	0	0.35956	1	8039	8039		65.157	35.987	1	274920	+		29882	13238	20441	20513	30273	30273					0.15419430224869757
PTFKVKVSKK	10	Unmodified	_PTFKVKVSKK_					0	0	0			REV__TMEM131|p.E934K|1|0.09|ENSG00000075568|chr2:97797435-97797435|C/T|missense_variant	REV__TMEM131|p.E934K|1|0.09|ENSG00000075568|chr2:97797435-97797435|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.91650390625	3	387.916653	1160.72813	-0.67287	-0.00026102	0.55082	0.00021367	-0.12205	-4.7346E-05	387.9167820162058	23.342	0.31711	23.342	23.235	23.552	0					13	6	4	0	0	0	0.5276	1	7891	7891		42.338	6.0204	1	413610	+		29883	13238	20441	20513	30274	30274					0.15419430224869757
PTFTFKSNL	9	Unmodified	_PTFTFKSNL_					0	0	0			REV__tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	REV__tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.1888732910156	3	352.190442	1053.5495	-1.9978	-0.0007036	-2.1387	-0.00075322	-4.1365	-0.0014568	352.1895709341054	24.381	0.13771	24.381	24.329	24.467	0					6	3	2	0	0	0	0.50461	1	7600	7600		31.53	1.2121	1	276220	+		29884	21893	20442	20514	30275	30275					0.024863405860060084
PTGCLIEM	8	Unmodified	_PTGCLIEM_					0	0	0			REV__ENST00000253008.2_1_9:133557731-133557833:+|nuORF	REV__ENST00000253008.2_1_9:133557731-133557833:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	432.2057189941406	2	432.203707	862.392861	3.2523	0.0014056	0.87995	0.00038032	4.1322	0.001786	432.2041853883702	17.093	0.12869	17.093	17.031	17.16	0					7	4	2	0	0	0	0.68754	1	4210	4210		35.201	4.6971	1	186650	+		29885	17971	20443	20515	30276	30276					-0.04383983900345356
PTGDRIRSK	9	Unmodified	_PTGDRIRSK_					0	0	0		ENST00000589867.2_1_18:47803200-47806373:-|nuORF;MBD1|p.D143Wfs*29|1|0.25|ENSG00000141644|chr18:50276713-50276714|CT/-|frameshift_variant;nc|ENSG00000141644|Q9UIS9-4|MBD1;nc|ENSG00000141644|Q9UIS9-11|MBD1;nc|ENSG00000141644|Q9UIS9-8|MBD1;nc|ENSG00000141644|Q9UIS9-7|MBD1;nc|ENSG00000141644|Q9UIS9-6|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;nc|ENSG00000141644|Q9UIS9-10|MBD1;nc|ENSG00000141644|Q9UIS9-2|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1	ENST00000589867.2_1_18:47803200-47806373:-|nuORF	ENST00000589867.2_1_18:47803200-47806373:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.294189453125	2	515.293622	1028.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.559	1	34.559	34.059	35.059	0								0	0	0	0.24544	1	12242	12242		44.377	8.7589	1				29886	4463	20444	20516	30277	30277					0.05954779423336731
PTGGRHDRP	9	Unmodified	_PTGGRHDRP_					0	0	0		ENST00000591201.5_1_19:1483001-1487304:-|nuORF;ENST00000300954.9_1_19:1483001-1487678:-|nuORF;ENST00000586616.5_1_19:1483766-1490130:-|nuORF;ENST00000441747.6_1_19:1482426-1490130:-|nuORF;ENST00000588195.5_1_19:1483001-1490375:-|nuORF	ENST00000591201.5_1_19:1483001-1487304:-|nuORF	ENST00000591201.5_1_19:1483001-1487304:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.75567626953125	2	496.754664	991.494775	0.98082	0.00048723	1.0307	0.000512	2.0115	0.00099923	496.7551214902752	21.579	0.41908	21.579	21.37	21.789	0					24	8	5	0	0	0	0.41113	1	7037	7037		40.778	40.778	1	4206500			29887	10962	20445	20517	30278	30278					-0.0013123344205041576
PTGLEPRQ	8	Unmodified	_PTGLEPRQ_					0	0	0		ENST00000476941.5_1_3:142442973-142443402:+|nuORF	ENST00000476941.5_1_3:142442973-142443402:+|nuORF	ENST00000476941.5_1_3:142442973-142443402:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.24267578125	2	449.243067	896.47158	-0.46233	-0.0002077	0.46648	0.00020956	0.0041559	1.867E-06	449.2434006347634	23.041	0.34491	23.041	22.918	23.263	0					19	8	3	0	0	0	0.43813	1	7584	7584		66.429	7.6473	1	331670			29888	9914	20446	20518	30279	30279					0.019203277206202074
PTGPRPFT	8	Unmodified	_PTGPRPFT_					0	0	0			REV__ENSG00000164591|ENST00000517768|MYOZ3	REV__ENSG00000164591|ENST00000517768|MYOZ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.73638916015625	2	436.734877	871.455202	2.6706	0.0011663	0.023685	1.0344E-05	2.6943	0.0011767	436.7351757984318	20.338	0.51748	20.338	20.011	20.528	0					28	10	4	0	0	0	0.6088	1	6472	6472		47.657	12.457	1	1092000	+		29889	15993	20447	20519	30280	30280					0.014332465545066952
PTGPVAPPPR	10	Unmodified	_PTGPVAPPPR_					0	0	0			REV__nc|ENSG00000138942|Q96GF1-2|RNF185	REV__nc|ENSG00000138942|Q96GF1-2|RNF185	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.190185546875	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.147	1	18.147	17.647	18.647	0								0	0	0	0.4201	1	4474	4474		20.837	0	1		+		29890	15008	20448	20520	30281	30281					0.0558918002569726
PTGQKAQAP	9	Unmodified	_PTGQKAQAP_					0	0	0			REV__nc|ENSG00000161010|Q6NTE8-3|MRNIP	REV__nc|ENSG00000161010|Q6NTE8-3|MRNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2427978515625	2	449.243067	896.47158	0.65972	0.00029638	-0.24352	-0.0001094	0.4162	0.00018698	449.24321392065264	22.986	0.61828	22.986	22.794	23.412	0					32	12	4	0	0	0	0.14603	1	7857	7857		68.787	6.6794	1	579910	+		29891	15773	20449	20521	30282	30282					0.019203277206088387
PTHSRIRK	8	Unmodified	_PTHSRIRK_					0	0	0		ENST00000585445.1_1_19:57005601-57005742:+|nuORF	ENST00000585445.1_1_19:57005601-57005742:+|nuORF	ENST00000585445.1_1_19:57005601-57005742:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.8000183105469	2	497.798875	993.583196	0.18938	9.4272E-05	2.8603	0.0014239	3.0497	0.0015181	497.80037049749313	28.825	0.13734	28.825	28.753	28.891	0					6	4	2	0	0	0	0.70598	1	9046	9046		32.812	4.9302	1	59634			29892	10895	20450	20522	30283	30283					0.0861480686842242
PTIHPSQY	8	Unmodified	_PTIHPSQY_					0	0	0		ENSG00000064393|ENST00000406875|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2	ENSG00000064393|ENST00000406875|HIPK2	ENSG00000064393|ENST00000406875|HIPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7377624511719	2	471.737617	941.460681	-0.12376	-5.8384E-05	0.24334	0.00011479	0.11958	5.641E-05	471.73771233809515	32.2	0.38382	32.2	32.001	32.385	0					14	8	2	0	0	0	0.70598	1	12225	12225		32.812	0.85756	1	318750			29893	1347	20451	20523	30284	30284					-0.012390746536766528
PTILISFYL	9	Unmodified	_PTILISFYL_					0	0	0		tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	356.2111511230469	3	356.210954	1065.61103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.278	1	23.278	22.778	23.778	0								0	0	0	0.37496	1	6973	6973		13.454	4.2422	1				29894	22946	20452	20524	30285	30285					0.08085272285279643
PTISPNFNF	9	Unmodified	_PTISPNFNF_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7605590820312	2	518.758549	1035.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.015	1	47.015	46.515	47.515	0								0	0	0	0.30504	1	18791	18791		34.173	1.3601	1				29895	2657	20453	20525	30286	30286					-0.013785189651571272
PTKKFLER	8	Unmodified	_PTKKFLER_					0	0	0			REV__ENSG00000158435|ENST00000289382|CNOT11	REV__ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.8056335449219	2	509.805834	1017.59712	-0.41162	-0.00020984	0.32638	0.00016639	-0.085234	-4.3453E-05	509.8059628708657	28.606	0.1632	28.606	28.548	28.712	0					5	3	2	0	0	0	0.5535	1	10514	10514		53.351	5.6941	1	78769	+		29896	15682	20454	20526	30287	30287					0.08902039576844345
PTKKNRGCK	9	Unmodified	_PTKKNRGCK_					0	0	0			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2906494140625	2	516.292568	1030.57058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.912	1	20.912	20.412	21.412	0								0	0	0	0.3428	1	5970	5970		26.693	4.733	1		+		29897	15315	20455	20527	30288	30288					0.05652027413862015
PTKQQPQQ	8	Unmodified	_PTKQQPQQ_					0	0	0			REV__ENSG00000070444|ENST00000174618|MNT	REV__ENSG00000070444|ENST00000174618|MNT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7532653808594	2	477.753798	953.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.183	1	11.183	10.683	11.683	0								0	0	0	1.7419	1	2235	2235		12.959	0	1		+		29898	13174	20456	20528	30289	30289					0.014437127493238222
PTKRLDIHK	9	Unmodified	_PTKRLDIHK_					0	0	0			REV__nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	REV__nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.8926086425781	3	369.892619	1106.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.359	1	18.359	17.859	18.859	0								0	0	0	0.1633	1	5356	5356		93.143	2.5424	1		+		29899	17357	20457	20529	30290	30290					0.10696515871154588
PTKRLETQSK	10	Unmodified	_PTKRLETQSK_					0	0	0			REV__SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	REV__SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.56414794921875	3	396.562938	1186.66699	3.1679	0.0012563	0.41513	0.00016463	3.583	0.0014209	396.56308159792	28.534	0.46662	28.534	28.426	28.893	0					21	9	4	0	0	0	0.39647	1	10339	10339		56.632	16.574	1	2626900	+		29900	14160	20458	20530	30291	30291					0.08111873454799934
PTKTGGFLLN	10	Unmodified	_PTKTGGFLLN_					0	0	0			REV__nc|ENSG00000197446|P24903-2|CYP2F1	REV__nc|ENSG00000197446|P24903-2|CYP2F1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.296142578125	2	524.295299	1046.57605	0.71972	0.00037735	0.013177	6.9084E-06	0.7329	0.00038425	524.295215293254	34.379	0.1504	34.379	34.318	34.468	0					13	7	2	0	0	0	0.6796	1	11226	11226		24.519	0.31644	1	85748	+		29901	21177	20459	20531	30292	30292					0.05462029477325814
PTKVLLEES	9	Unmodified	_PTKVLLEES_					0	0	0			REV__NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	REV__NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.1942138671875	3	339.193852	1014.55973	1.4809	0.00050231	-0.31605	-0.0001072	1.1649	0.00039511	339.1937903497549	17.591	0.65383	17.591	17.351	18.005	0					31	13	4	0	0	0	0.48389	1	5262	5262		41.427	9.8968	1	1092800	+		29902	16059	20460	20532	30293	30293					0.05302903520566815
PTKWLLTL	8	Unmodified	_PTKWLLTL_					0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.5343017578125	3	324.535661	970.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.297	1	18.297	17.797	18.797	0								0	0	0	1.7419	1	5591	5591		30.504	2.6214	1		+		29903	12999	20461	20533	30294	30294					0.09868422833653767
PTLASMRLQG	10	Unmodified	_PTLASMRLQG_					0	0	0			REV__ENST00000514213.6_3_4:76734909-76735050:+|nuORF	REV__ENST00000514213.6_3_4:76734909-76735050:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.5306701660156	3	358.530581	1072.56991	0.30073	0.00010782	-0.83347	-0.00029882	-0.53274	-0.000191	358.5304182038777	18.318	0.99614	18.318	17.955	18.951	0					59	20	5	0	0	0	0.60281	1	5687	5687		33.922	4.7516	1	22112000	+		29904	19899	20462	20534	30295	30295					0.03653187974168759
PTLCPTPHPA	10	Unmodified	_PTLCPTPHPA_					0	0	0		ENST00000446716.5_1_2:220084109-220084259:-|nuORF	ENST00000446716.5_1_2:220084109-220084259:-|nuORF	ENST00000446716.5_1_2:220084109-220084259:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2614135742188	2	517.260402	1032.50625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.538	1	30.538	30.038	31.038	0								0	0	0	0.37816	1	10412	10412		37.159	5.2042	1				29905	9621	20463	20535	30296	30296					-0.008701724629418095
PTLCRVLR	8	Unmodified	_PTLCRVLR_					0	0	0			REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF	REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2883605957031	2	479.286754	956.558955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.772	1	13.772	13.272	14.272	0								0	0	0	1.7419	1	3210	3210		12.959	0.75233	1		+		29906	20370	20464	20536	30297	30297					0.0789383039053746
PTLGAATM	8	Unmodified	_PTLGAATM_					0	0	0			REV__CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant	REV__CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.1956787109375	2	381.196739	760.378925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.444	1	48.444	47.944	48.944	0								0	0	0	1.7419	1	19254	19254		26.796	6.3143	1		+		29907	12330	20465	20537	30298	30298					-0.010848933371335079
PTLGARARVGG	11	Unmodified	_PTLGARARVGG_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.207275390625	3	352.208718	1053.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.403	1	19.403	18.903	19.903	0								0	0	0	0.44926	1	5262	5262		26.063	2.5407	1				29908	2339	20466	20538	30299	30299					0.07966772177269377
PTLGPSVPL	9	Unmodified	_PTLGPSVPL_					0	0	0			REV__ENST00000534407.5_1_11:124757602-124761787:-|nuORF	REV__ENST00000534407.5_1_11:124757602-124761787:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.760498046875	2	440.760561	879.506569	0.56375	0.00024848	-1.2079	-0.00053238	-0.64412	-0.0002839	440.7601566783637	41.227	0.30148	41.227	41.075	41.377	0					22	14	2	0	0	0	0.41354	1	15650	15650		40.573	5.3719	1	136500	+		29909	20092	20467	20539	30300	30300					0.06199570528565346
PTLKCIVLLV	10	Unmodified	_PTLKCIVLLV_					0	0	0			REV__nc|ENSG00000214711|A8MX76-2|CAPN14	REV__nc|ENSG00000214711|A8MX76-2|CAPN14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.9044494628906	3	366.903356	1097.68824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.094	1	14.094	13.594	14.594	0								0	0	0	0.38322	1	3359	3359		40.058	0	1		+		29910	17583	20468	20540	30301	30301					0.143301672299458
PTLLCELP	8	Unmodified	_PTLLCELP_					0	0	0			REV__ENSG00000254206|ENST00000698511|NPIPB11	REV__ENSG00000254206|ENST00000698511|NPIPB11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.24285888671875	2	443.241147	884.46774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.026	1	15.026	14.526	15.526	0								0	0	0	1.7419	1	3792	3792		19.36	1.0356	1		+		29911	17742	20469	20541	30302	30302					0.020885219025331025
PTLPPPPDPP	10	Unmodified	_PTLPPPPDPP_					0	0	0			REV__ENST00000601816.3_1_19:50364595-50365005:-|nuORF	REV__ENST00000601816.3_1_19:50364595-50365005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2784423828125	2	514.276575	1026.5386	3.2054	0.0016484	1.5007	0.00077178	4.7061	0.0024202	514.2771287943116	31.546	0.36492	31.546	31.437	31.802	0					17	7	3	0	0	0	0.17732	1	11819	11819		82.241	32.216	1	643070	+		29912	20601	20470	20542	30303	30303					0.026389382117031346
PTMLAIQIAI	10	Unmodified	_PTMLAIQIAI_					0	0	0		ERCC4|p.T227I|1|0.35|ENSG00000175595|chr16:13928123-13928123|C/T|missense_variant	ERCC4|p.T227I|1|0.35|ENSG00000175595|chr16:13928123-13928123|C/T|missense_variant	ERCC4|p.T227I|1|0.35|ENSG00000175595|chr16:13928123-13928123|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.818359375	2	535.817553	1069.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.793	1	15.793	15.293	16.293	0								0	0	0	0.38322	1	3497	3497		35.618	1.4457	1				29913	11114	20471	20543	30304	30304					0.08852717299146207
PTMLASMLPL	10	Unmodified	_PTMLASMLPL_					0	0	0			REV__ENSG00000169188|ENST00000374987|APEX2	REV__ENSG00000169188|ENST00000374987|APEX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.5304870605469	3	358.529301	1072.56607	3.5984	0.0012901	-0.64775	-0.00023224	2.9506	0.0010579	358.5291973365699	18.074	0.54732	18.074	17.801	18.348	0					48	17	5	0	0	0	0.64162	1	4606	4606		29.17	29.17	1	2278200	+		29914	16298	20472	20544	30305	30305					0.032693821560997094
PTMNGVSQVSK	11	Unmodified	_PTMNGVSQVSK_					0	0	0		ENST00000483298.1_1_10:64953077-64954292:-|nuORF	ENST00000483298.1_1_10:64953077-64954292:-|nuORF	ENST00000483298.1_1_10:64953077-64954292:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.2914428710938	2	574.29243	1146.57031	-1.504	-0.00086371	-1.0452	-0.00060026	-2.5492	-0.001464	574.2918644022523	12.469	0.15837	12.469	12.377	12.536	0					20	9	3	0	0	0	0.73516	1	2405	2405		20.837	9.9716	1	123320			29915	9978	20473	20545	30306	30306					0.0028856290334715595
PTMPVSSPLV	10	Unmodified	_PTMPVSSPLV_					0	0	0		ENST00000248948.3_1_22:24095052-24095358:-|nuORF	ENST00000248948.3_1_22:24095052-24095358:-|nuORF	ENST00000248948.3_1_22:24095052-24095358:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.27783203125	2	514.27826	1026.54197	1.0272	0.00052829	-2.3228	-0.0011946	-1.2956	-0.00066629	514.2771033437252	31.345	0.1453	31.345	31.274	31.42	0					5	3	2	0	0	0	0.46215	1	10780	10780		49.442	3.4693	1	63206			29916	8237	20474	20546	30307	30307					0.029758649940504256
PTNIIAAK	8	Unmodified	_PTNIIAAK_					0	0	0		ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H	ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENST00000521335.1_1_8:54745492-54754250:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.25299072265625	2	414.252903	826.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.443	1	30.443	29.943	30.943	0								0	0	0	1.7419	1	9703	9703		30.504	2.2494	1				29917	1216	20475	20547	30308	30308					0.07106703731369635
PTNQFLIL	8	Unmodified	_PTNQFLIL_					0	0	0			REV__nc|ENSG00000184381|O60733-3|PLA2G6	REV__nc|ENSG00000184381|O60733-3|PLA2G6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.27398681640625	2	473.273835	944.533118	0.24753	0.00011715	-0.03639	-1.7223E-05	0.21113	9.9925E-05	473.27406346369344	35.386	0.35	35.386	35.192	35.542	0					13	9	2	0	0	0	0.63077	1	13275	13275		44.117	1.7207	1	90950	+		29918	16979	20476	20548	30309	30309					0.05863259419913902
PTNREPLKL	9	Unmodified	_PTNREPLKL_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.3135986328125	2	534.314023	1066.61349	-1.3279	-0.0007095	0.24336	0.00013003	-1.0845	-0.00057947	534.314331325199	17.344	0.081669	17.344	17.294	17.376	0					4	2	2	0	0	0	0.60749	1	4309	4309		20.947	5.3051	1	30320	+		29919	14014	20477	20549	30310	30310					0.08285120742925756
PTPHTEEA	8	Unmodified	_PTPHTEEA_					0	0	0		TP53I13|p.R306H|1|0.18|ENSG00000167543|chr17:29572545-29572545|G/A|missense_variant	TP53I13|p.R306H|1|0.18|ENSG00000167543|chr17:29572545-29572545|G/A|missense_variant	TP53I13|p.R306H|1|0.18|ENSG00000167543|chr17:29572545-29572545|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.2033386230469	2	441.203607	880.392661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.762	1	32.762	32.262	33.262	0								0	0	0	1.7419	1	10953	10953		25.45	2.4077	1				29920	22559	20478	20550	30311	30311					-0.05231944304330227
PTPIQSPW	8	Unmodified	_PTPIQSPW_					0	0	0			REV__APC|p.R2801W|1|0.07|ENSG00000134982|chr5:112843995-112843995|C/T|missense_variant	REV__APC|p.R2801W|1|0.07|ENSG00000134982|chr5:112843995-112843995|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.243896484375	2	463.242535	924.470518	0.64615	0.00029933	1.8742	0.00086822	2.5204	0.0011675	463.24347126721705	28.719	0.17539	28.719	28.643	28.818	0					9	4	3	0	0	0	0.65148	1	10201	10201		40.778	1.972	1	194440	+		29921	12184	20479	20551	30312	30312					0.0052611335171377505
PTPKESPHF	9	Unmodified	_PTPKESPHF_					0	0	0		ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2647705078125	2	520.263999	1038.51345	0.066538	3.4617E-05	0.68757	0.00035772	0.75411	0.00039234	520.2645092159484	15.529	0.25783	15.529	15.439	15.697	0					9	6	2	0	0	0	0.43426	1	4040	4040		38.806	0	1	979190			29922	2281	20480	20552	30313	30313					-0.0042711659086762666
PTPLTFTLL	9	Unmodified	_PTPLTFTLL_					0	0	0		ENST00000427442.6_1_20:42157961-42159515:+|nuORF	ENST00000427442.6_1_20:42157961-42159515:+|nuORF	ENST00000427442.6_1_20:42157961-42159515:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.79425048828125	2	501.797143	1001.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.789	1	37.789	37.289	38.289	0								0	0	0	0.29774	1	13523	13523		35.618	2.1027	1				29923	9456	20481	20553	30314	30314					0.07900699251206333
PTPSLGDQGC	10	Unmodified	_PTPSLGDQGC_					0	0	0		ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7156982421875	2	487.716024	973.417496	-0.064245	-3.1333E-05	-0.60447	-0.00029481	-0.66871	-0.00032614	487.7156431876693	28.756	0.41422	28.756	28.509	28.923	0					21	16	2	0	0	0	0.64162	1	8977	8977		29.17	1.2878	1	122170			29924	9865	20482	20554	30315	30315					-0.07027632493247893
PTPTNATRRF	10	Unmodified	_PTPTNATRRF_					0	0	0			REV__CON__Q2KJ83	REV__CON__Q2KJ83	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.548828125	3	387.543878	1159.60981	0.86014	0.00033334	-0.82682	-0.00032043	0.033321	1.2913E-05	387.5435515873492	18.683	0.43092	18.683	18.385	18.816	0					42	10	6	0	0	0	0.60281	1	5409	5409		33.922	7.8582	1	11793000	+	+	29925	12607	20483	20555	30316	30316					0.03638450969083351
PTPVSLFRET	10	Unmodified	_PTPVSLFRET_					0	0	0		ENSG00000183034|ENST00000331427|OTOP2;OTOP2|p.F290Lfs*25|2|0.27|ENSG00000183034|chr17:74930500-74930500|T/-|frameshift_variant	ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.811279296875	2	573.811313	1145.60807	0.60891	0.0003494	-0.29018	-0.00016651	0.31872	0.00018289	573.8110287666352	33.401	0.21297	33.401	33.292	33.505	0					9	6	2	0	0	0	0.44601	1	11719	11719		51.193	1.6567	1	96460			29926	6936	20484	20556	30317	30317					0.04109397160482331
PTQLRSRSA	9	Unmodified	_PTQLRSRSA_					0	0	0			REV__ENST00000310574.7_1_2:27434356-27435124:-|nuORF	REV__ENST00000310574.7_1_2:27434356-27435124:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.19427490234375	3	339.192957	1014.55704	3.0191	0.0010241	0.76269	0.0002587	3.7818	0.0012828	339.193247529035	17.551	0.46464	17.551	17.353	17.817	0					28	9	4	0	0	0	0.50858	1	5078	5078		38.754	9.5835	1	843840	+		29927	18267	20485	20557	30318	30318					0.050344929062816846
PTQLRYLK	8	Unmodified	_PTQLRYLK_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.2064208984375	3	340.206315	1017.59712	0.95375	0.00032447	-0.71496	-0.00024323	0.23879	8.1238E-05	340.2060482688017	28.622	0.22093	28.622	28.537	28.758	0					10	5	3	0	0	0	0.27512	1	10125	10125		90.777	10.322	1	217660	+		29928	14436	20486	20558	30319	30319					0.08902039576832976
PTQMGLRISG	10	Unmodified	_PTQMGLRISG_					0	0	0		nc|ENSG00000139405|Q96K30-2|RITA1	nc|ENSG00000139405|Q96K30-2|RITA1	nc|ENSG00000139405|Q96K30-2|RITA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.85870361328125	3	353.858698	1058.55426	0.70977	0.00025116	-1.1384	-0.00040283	-0.42864	-0.00015168	353.8584404922502	17.902	0.60145	17.902	17.619	18.221	0					51	14	6	0	0	0	0.63019	1	5070	5070		30.569	0.25114	1	24725000			29929	11547	20487	20559	30320	30320					0.027329014571023436
PTQPPRAPEL	10	Unmodified	_PTQPPRAPEL_					0	0	0			REV__ENSG00000178184|ENST00000353265|PARD6G	REV__ENSG00000178184|ENST00000353265|PARD6G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.3045654296875	2	553.303655	1104.59276	1.3176	0.00072903	-0.065762	-3.6387E-05	1.2518	0.00069264	553.3033270611882	30.47	0.24234	30.47	30.391	30.634	0					19	9	3	0	0	0	0.63851	1	9698	9698		24.519	0	1	230040	+		29930	16726	20488	20560	30321	30321					0.04464530363270569
PTQTAETTL	9	Unmodified	_PTQTAETTL_					0	0	0			REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	REV__nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2452087402344	2	481.245472	960.476391	-0.29377	-0.00014138	0.85444	0.0004112	0.56067	0.00026982	481.2456388744395	34.133	0.10775	34.133	34.065	34.173	0					5	3	2	0	0	0	0.40353	1	12063	12063		41.427	3.6151	1	39867	+		29931	14937	20489	20561	30322	30322					-0.0054283292729451205
PTRPACLLRQ	10	Unmodified	_PTRPACLLRQ_					0	0	0		nc|ENSG00000173662|Q7RTX1-2|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1	nc|ENSG00000173662|Q7RTX1-2|TAS1R1	nc|ENSG00000173662|Q7RTX1-2|TAS1R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.82666015625	2	577.826775	1153.639	1.5023	0.00086807	-0.9804	-0.0005665	0.52191	0.00030157	577.8262216305217	37.999	0.14923	37.999	37.928	38.077	0					9	7	2	0	0	0	0.67098	1	14434	14434		25.574	0	1	54618			29932	6441	20490	20562	30323	30323					0.06832271993721406
PTRRELSL	8	Unmodified	_PTRRELSL_					0	0	0		ENSG00000244486|ENST00000622235|SCARF2	ENSG00000244486|ENST00000622235|SCARF2	ENSG00000244486|ENST00000622235|SCARF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2850036621094	2	486.285266	970.555979	0.82851	0.00040289	-1.5669	-0.00076197	-0.73842	-0.00035908	486.284576071978	18.413	0.51248	18.413	18.206	18.719	0					16	10	3	0	0	0	0.67394	1	5521	5521		37.159	1.5408	1	467410			29933	7968	20491	20563	30324	30324					0.06952278537380607
PTRRSPSL	8	Unmodified	_PTRRSPSL_					0	0	0			REV__ENST00000296783.7_1_5:78908565-78915435:+|nuORF	REV__ENST00000296783.7_1_5:78908565-78915435:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2642822265625	2	457.264333	912.514114	0.72171	0.00033001	-0.30227	-0.00013822	0.41945	0.0001918	457.26407678316514	47.289	1.3985	47.289	47.041	48.439	0					133	83	2	0	0	0	0.75323	1	18127	18127		26.693	3.6504	1	252900	+		29934	18183	20492	20564	30325	30325					0.054357228488470355
PTRYGVVLG	9	Unmodified	_PTRYGVVLG_					0	0	0		nc|ENSG00000158887|P25189-2|MPZ;ENSG00000158887|ENST00000533357|MPZ	nc|ENSG00000158887|P25189-2|MPZ	nc|ENSG00000158887|P25189-2|MPZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.9554748535156	2	481.276909	960.539266	-0.10724	-5.1611E-05	2.3921	0.0011513	2.2849	0.0010997	481.2781827715035	20.037	0.11771	20.037	19.978	20.096	0					4	2	2	0	0	0	0.61124	1	6422	6422		20.482	1.1219	1	72551			29935	5290	20493	20565	30326	30326					0.057417776514284924
PTRYLAKLGAQ	11	Unmodified	_PTRYLAKLGAQ_					0	0	0			REV__nc|ENSG00000168032|O75355-2|ENTPD3	REV__nc|ENSG00000168032|O75355-2|ENTPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.5725402832031	3	406.571545	1216.69281	3.4416	0.0013993	-1.2139	-0.00049355	2.2277	0.00090572	406.57111680640895	19.291	0.18096	19.291	19.221	19.402	0					14	5	4	0	0	0	0.63398	1	5206	5206		36.528	0	1	677650	+		29936	16233	20494	20566	30327	30327					0.0931276769708802
PTRYLHPEGLP	11	Unmodified	_PTRYLHPEGLP_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;COL14A1|p.N1312Kfs*3|1|0.45|ENSG00000187955|chr8:120283741-120283742|-/A|frameshift_variant;COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	640.3412475585938	2	640.343312	1278.67207	0.21211	0.00013582	-2.8763	-0.0018418	-2.6642	-0.001706	640.3416237970625	23.332	0.12298	23.332	23.249	23.372	0					5	3	2	0	0	0	0.79309	1	6742	6742		8.2351	0	1	79196			29937	7227	20495	20567	30328	30328					0.043881773174234695
PTSALWSY	8	Unmodified	_PTSALWSY_					0	0	0			REV__ENSG00000198570|ENST00000680073|RD3	REV__ENSG00000198570|ENST00000680073|RD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2294006347656	2	462.726718	923.438883	0.66735	0.0003088	-2.1375	-0.00098909	-1.4702	-0.00068029	462.72412634189084	28.437	0.45006	28.437	28.291	28.741	0					31	11	4	0	0	0	0.65276	1	10083	10083		40.573	3.5441	1	1318300	+		29938	17407	20496	20568	30329	30329					-0.025898794022396032
PTSALWSY	8	Unmodified	_PTSALWSY_					0	0	0			REV__ENSG00000198570|ENST00000680073|RD3	REV__ENSG00000198570|ENST00000680073|RD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2295837402344	2	462.726718	923.438883	-0.14525	-6.7211E-05	-1.7321	-0.00080148	-1.8773	-0.00086869	462.724505482496	28.442	0.74536	28.442	28.291	29.037	0					37	15	4	0	0	0	0.65276	1	10453	10453		40.573	5.3719	1	2021300	+		29939	17407	20496	20568	30330	30330					-0.025898794022396032
PTSCFESSY	9	Unmodified	_PTSCFESSY_					0	0	0			REV__PLAT|p.V248Gfs*18|1|0.26|ENSG00000104368|chr8:42182781-42182782|-/T|frameshift_variant	REV__PLAT|p.V248Gfs*18|1|0.26|ENSG00000104368|chr8:42182781-42182782|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7027587890625	2	510.702583	1019.39061	0.00067516	3.448E-07	0.84327	0.00043066	0.84395	0.00043101	510.7029837391635	33.982	0.25731	33.982	33.908	34.165	0					8	5	2	0	0	0	0.41354	1	13053	13053		40.573	7.057	1	89005	+		29940	13722	20497	20569	30331	30331					-0.11830741104449771
PTSCSTCRMW	10	Unmodified	_PTSCSTCRMW_					0	0	0		BRD3|p.P24Rfs*24|1|0.34|ENSG00000169925|chr9:134053407-134053407|G/-|frameshift_variant	BRD3|p.P24Rfs*24|1|0.34|ENSG00000169925|chr9:134053407-134053407|G/-|frameshift_variant	BRD3|p.P24Rfs*24|1|0.34|ENSG00000169925|chr9:134053407-134053407|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.2384643554688	2	586.238286	1170.46202	0.54423	0.00031905	-0.56674	-0.00033225	-0.022517	-1.3201E-05	586.2380377027711	31.781	0.16254	31.781	31.707	31.869	0					8	5	2	0	0	0	0.62235	1	10980	10980		31.53	2.3803	1	161340			29941	319	20498	20570	30332	30332					-0.11639267943087361
PTSPFVHI	8	Unmodified	_PTSPFVHI_					0	0	0			REV__PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	REV__PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2428283691406	2	449.245078	896.475603	-2.5986	-0.0011674	-1.5317	-0.00068812	-4.1303	-0.0018555	449.2447932486128	22.82	0.40031	22.82	22.723	23.123	0					14	9	2	0	0	0	0.4723	1	6872	6872		62.978	11.643	1	123160	+		29942	13140	20499	20571	30333	30333					0.023224172143159194
PTSPIRVK	8	Unmodified	_PTSPIRVK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.2791748046875	2	449.279452	896.544351	-0.46441	-0.00020865	-0.051185	-2.2996E-05	-0.51559	-0.00023164	449.2793846394255	23.17	0.30586	23.17	22.958	23.263	0					19	7	3	0	0	0	0.48092	1	7621	7621		62.107	3.3255	1	1072700			29943	7403	20500	20572	30334	30334					0.09194081514044683
PTSPIRVK	8	Unmodified	_PTSPIRVK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.27935791015625	2	449.279452	896.544351	-1.1815	-0.00053082	0.71753	0.00032237	-0.46395	-0.00020844	449.27980388463703	22.911	0.29115	22.911	22.748	23.039	0					22	10	3	0	0	0	0.51384	1	6792	6792		58.782	5.4305	1	329050			29944	7403	20500	20572	30335	30335					0.09194081514044683
PTSPLVRK	8	Unmodified	_PTSPLVRK_					0	0	0		ENST00000430335.1_3_22:38699202-38712683:-|nuORF	ENST00000430335.1_3_22:38699202-38712683:-|nuORF	ENST00000430335.1_3_22:38699202-38712683:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2795715332031	2	449.279452	896.544351	0.65829	0.00029576	-0.92199	-0.00041423	-0.2637	-0.00011848	449.2790330120934	23.102	0.31786	23.102	22.894	23.212	0					21	6	4	0	0	0	0.58597	1	7904	7904		51.335	1.8939	1	1355800			29945	9487	20501	20573	30336	30336					0.09194081514044683
PTSQATLL	8	Unmodified	_PTSQATLL_					0	0	0			REV__nc|ENSG00000101888|Q9NPJ8-4|NXT2	REV__nc|ENSG00000101888|Q9NPJ8-4|NXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.734619140625	2	415.734543	829.454533	1.0442	0.00043409	2.002	0.00083232	3.0462	0.0012664	415.7360025237881	31.129	0.54652	31.129	30.955	31.501	0					25	13	3	0	0	0	0.54629	1	11291	11291		55.504	0	1	376240	+		29946	13616	20502	20574	30337	30337					0.03298407114800739
PTSSLTATSGT	11	Unmodified	_PTSSLTATSGT_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7532653808594	2	511.753661	1021.49277	-0.13662	-6.9915E-05	0.84708	0.0004335	0.71046	0.00036358	511.7539971031992	14.931	0.21286	14.931	14.816	15.029	0					16	9	2	0	0	0	0.5473	1	3138	3138		40.778	0.71999	1	157670	+		29947	14209	20503	20575	30338	30338					-0.017117517611836774
PTSVEAKQK	9	Unmodified	_PTSVEAKQK_					0	0	0		ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.27685546875	2	494.277106	986.53966	-0.067007	-3.312E-05	-0.40116	-0.00019829	-0.46817	-0.00023141	494.2768848803779	19.898	0.34641	19.898	19.822	20.168	0					29	10	4	0	0	0	0.055856	1	5220	5220		93.195	0.052222	1	7509900			29948	6623	20504	20576	30339	30339					0.04585152580614249
PTTDVKKG	8	Unmodified	_PTTDVKKG_					0	0	0			REV__ENSG00000125844|ENST00000377813|RRBP1	REV__ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2396545410156	2	423.239993	844.465432	-0.23872	-0.00010104	-0.43726	-0.00018507	-0.67599	-0.00028611	423.23979569866015	16.238	0.21667	16.238	16.08	16.297	0					8	4	2	0	0	0	0.72381	1	4591	4591		30.504	0.18592	1	160370	+		29949	14443	20505	20577	30340	30340					0.03697809489096926
PTTGQQNADE	10	Unmodified	_PTTGQQNADE_					0	0	0		PLEKHG1|p.A73T|1|0.09|ENSG00000120278|chr6:150733898-150733898|G/A|missense_variant	PLEKHG1|p.A73T|1|0.09|ENSG00000120278|chr6:150733898-150733898|G/A|missense_variant	PLEKHG1|p.A73T|1|0.09|ENSG00000120278|chr6:150733898-150733898|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7315063476562	2	530.730717	1059.44688	2.4222	0.0012856	-1.4023	-0.00074427	1.0199	0.00054129	530.7301873283922	31.316	0.50252	31.316	31.043	31.545	0					29	12	3	0	0	0	0.61238	1	11354	11354		32.751	2.2469	1	458750			29950	11942	20506	20578	30341	30341					-0.0804639694342768
PTTPGHVGI	9	Unmodified	_PTTPGHVGI_					0	0	0			REV__nc|ENSG00000136068|O75369-7|FLNB	REV__nc|ENSG00000136068|O75369-7|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.73974609375	2	439.74016	877.465767	-0.56044	-0.00024645	-0.29398	-0.00012928	-0.85442	-0.00037572	439.74012514540755	34.026	0.61257	34.026	33.748	34.36	0					22	13	2	0	0	0	0.50461	1	13029	13029		31.955	5.1588	1	83010	+		29951	14845	20507	20579	30342	30342					0.022132292089509065
PTTPVLTRNAY	11	Unmodified	_PTTPVLTRNAY_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.5592041015625	3	411.559305	1231.65609	0.10983	4.52E-05	-0.44325	-0.00018242	-0.33343	-0.00013722	411.5591005351147	29.481	0.36411	29.481	29.39	29.754	0					22	9	4	0	0	0	0.74306	1	9910	9910		26.75	3.2354	1	1108600			29952	2855	20508	20580	30343	30343					0.04952471080514442
PTVGRGPHL	9	Unmodified	_PTVGRGPHL_					0	0	0		TNS2|p.G574R|1|0.34|ENSG00000111077|chr12:53059361-53059361|G/A|missense_variant	TNS2|p.G574R|1|0.34|ENSG00000111077|chr12:53059361-53059361|G/A|missense_variant	TNS2|p.G574R|1|0.34|ENSG00000111077|chr12:53059361-53059361|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2654724121094	2	467.266876	932.519199	-0.7063	-0.00033003	-1.5051	-0.0007033	-2.2114	-0.0010333	467.26617123747667	23.258	0.10538	23.258	23.162	23.267	0					4	2	2	0	0	0	0.32741	1	7060	7060		47.916	5.0513	1	111060			29953	22554	20509	20581	30344	30344					0.050240267114645576
PTVHTVTM	8	Unmodified	_PTVHTVTM_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.22906494140625	2	443.228571	884.442588	-0.50471	-0.0002237	0.36766	0.00016296	-0.13705	-6.0745E-05	443.22872681814073	37.687	0.15958	37.687	37.606	37.766	0					12	7	3	0	0	0	0.65276	1	13475	13475		40.573	3.4135	1	68888			29954	5270	20510	20582	30345	30345					-0.004255329000329766
PTVKPDYN	8	Unmodified	_PTVKPDYN_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2381591796875	2	467.23745	932.460347	-0.43635	-0.00020388	2.7747	0.0012965	2.3384	0.0010926	467.23892592835114	32.006	0.23456	32.006	31.888	32.122	0					15	9	2	0	0	0	0.79882	1	10293	10293		19.36	1.995	1	48769	+		29955	16582	20511	20583	30346	30346					-0.008584943735399975
PTVQYPLEV	9	Unmodified	_PTVQYPLEV_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000503279.1_1_5:94864675-94872608:-|nuORF;ENST00000515207.1_1_5:94872443-94877598:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2796630859375	2	523.281857	1044.54916	0.76082	0.00039812	-3.1129	-0.0016289	-2.3521	-0.0012308	523.2798500613746	31.147	0.11763	31.147	31.086	31.204	0					8	4	3	0	0	0	0.13267	1	9983	9983		71.877	1.0613	1	90764			29956	7584	20512	20584	30347	30347					0.02866920866131295
PTVREQIPL	9	Unmodified	_PTVREQIPL_					0	0	0		ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.5414733886719	3	351.541475	1051.60259	0.49487	0.00017397	-0.88725	-0.00031191	-0.39238	-0.00013794	351.5411908955352	23.482	0.14098	23.482	23.386	23.526	0					7	3	3	0	0	0	0.48389	1	7792	7792		34.173	1.3601	1	498960			29957	4974	20513	20585	30348	30348					0.07885718368675043
PTVSKPFVVL	10	Unmodified	_PTVSKPFVVL_					0	0	0			REV__AKR1B1|p.I261F|1|0.09|ENSG00000085662|chr7:134447342-134447342|T/A|missense_variant	REV__AKR1B1|p.I261F|1|0.09|ENSG00000085662|chr7:134447342-134447342|T/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8302001953125	2	543.831517	1085.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.26	1	18.26	17.76	18.76	0								0	0	0	0.40315	1	4730	4730		24.519	8.8774	1		+		29958	12132	20514	20586	30349	30349					0.10908363550902322
PTVVCRPNL	9	Unmodified	_PTVVCRPNL_					0	0	0		CSN3|p.R109C|1|0.06|ENSG00000171209|chr4:70249235-70249235|C/T|missense_variant	CSN3|p.R109C|1|0.06|ENSG00000171209|chr4:70249235-70249235|C/T|missense_variant	CSN3|p.R109C|1|0.06|ENSG00000171209|chr4:70249235-70249235|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7759094238281	2	499.776219	997.537886	-1.035	-0.00051727	1.2568	0.0006281	0.22177	0.00011084	499.77659805496296	24.314	1.0466	24.314	24.15	25.196	0					79	34	3	0	0	0	0.47038	1	7394	7394		35.618	0.41757	1	585550			29959	697	20515	20587	30350	30350					0.03901820291014246
PTWARGTPL	9	Unmodified	_PTWARGTPL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7764587402344	2	499.774534	997.534515	0.16174	8.0832E-05	3.4802	0.0017393	3.6419	0.0018201	499.7760811247103	24.375	1.0095	24.375	24.172	25.182	0					42	23	2	0	0	0	0.41113	1	7552	7552		40.778	5.1599	1	300740			29960	4890	20516	20588	30351	30351					0.03564893508678324
PTYRAQGVV	9	Unmodified	_PTYRAQGVV_					0	0	0		BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.8504333496094	3	330.85042	989.529429	0.27404	9.0666E-05	-0.22213	-7.3491E-05	0.051913	1.7175E-05	330.85030563164474	16.662	0.092628	16.662	16.627	16.719	0					5	3	2	0	0	0	0.61124	1	3839	3839		13.454	2.8672	1	90308			29961	326	20517	20589	30352	30352					0.03424589646044751
PUEUKKAQNKU	11	Unmodified	_PUEUKKAQNKU_					0	0	0			REV__ENSG00000250722|ENST00000514985|SELENOP	REV__ENSG00000250722|ENST00000514985|SELENOP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	698.199951171875	2	698.202445	1394.39034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.941	1	49.941	49.441	50.441	0								0	0	0	0.45674	1	18783	18783		0	0	0		+		29962	17731	20518	20590	30353	30353					-0.2910833572509546
PVAESLGAEL	10	Unmodified	_PVAESLGAEL_					0	0	0			REV__nc|ENSG00000104059|O60320-2|ENTREP2	REV__nc|ENSG00000104059|O60320-2|ENTREP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.26446533203125	2	493.263665	984.512776	1.4096	0.00069529	-1.2972	-0.00063988	0.11233	5.541E-05	493.2633423162446	26.418	0.24233	26.418	26.306	26.548	0					13	8	2	0	0	0	0.65213	1	8014	8014		27.882	0	1	54325	+		29963	13706	20519	20591	30354	30354					0.01990043969431099
PVCLVSRI	8	Unmodified	_PVCLVSRI_					0	0	0			REV__ENST00000497003.5_1_2:178552959-178791632:-|nuORF	REV__ENST00000497003.5_1_2:178552959-178791632:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7630310058594	2	443.762581	885.510608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.455	1	12.455	11.955	12.955	0								0	0	0	1.7419	1	2806	2806		35.201	1.6851	1		+		29964	19781	20520	20592	30355	30355					0.0632733675063264
PVDLKRKIAR	10	Unmodified	_PVDLKRKIAR_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.2593078613281	3	399.259302	1194.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.932	1	42.932	42.432	43.432	0								0	0	0	0.4201	1	16828	16828		18.531	5.7193	1				29965	3861	20521	20593	30356	30356					0.16648753204981404
PVDWLRPCLA	10	Unmodified	_PVDWLRPCLA_					0	0	0			REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3118896484375	2	585.310426	1168.6063	3.2099	0.0018788	-0.60688	-0.00035521	2.603	0.0015236	585.3100351205278	34.23	1.0709	34.23	33.793	34.864	0					66	22	4	0	0	0	0.57532	1	12989	12989		37.159	37.159	1	834080	+		29966	16882	20522	20594	30357	30357					0.02874064870889015
PVEALPVG	8	Unmodified	_PVEALPVG_					0	0	0		TFCP2L1|p.Q427Sfs*18|1|0.32|ENSG00000115112|chr2:121231888-121231888|G/-|frameshift_variant;ENSG00000115112|ENST00000263707|TFCP2L1	TFCP2L1|p.Q427Sfs*18|1|0.32|ENSG00000115112|chr2:121231888-121231888|G/-|frameshift_variant	TFCP2L1|p.Q427Sfs*18|1|0.32|ENSG00000115112|chr2:121231888-121231888|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2255859375	2	391.226354	780.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.434	1	45.434	44.934	45.934	0								0	0	0	1.7419	1	16906	16906		23.037	0	1				29967	2882	20523	20595	30358	30358					0.03915325948719328
PVEFATKKAN	10	Unmodified	_PVEFATKKAN_					0	0	0		tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.8067626953125	2	552.806031	1103.59751	1.4405	0.00079632	-0.16869	-9.325E-05	1.2718	0.00070307	552.8059354523941	37.01	0.15209	37.01	36.921	37.074	0					11	8	2	0	0	0	0.61238	1	12123	12123		35.618	13.658	1	48912			29968	23049	20524	20596	30359	30359					0.04985414506040797
PVEKMRTMI	9	Unmodified	_PVEKMRTMI_					0	0	0		ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant	ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant	ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.7973022460938	2	552.798837	1103.58312	-1.2355	-0.00068296	-1.2831	-0.00070929	-2.5185	-0.0013922	552.7980266656142	34.577	0.3397	34.577	34.455	34.795	0					28	10	4	0	0	0	0.099922	1	12231	12231		79.451	22.73	1	688620			29969	23127	20525	20597	30360	30360					0.03547302761876381
PVEPARVL	8	Unmodified	_PVEPARVL_					0	0	0			REV__ENSG00000154719|ENST00000352957|MRPL39	REV__ENSG00000154719|ENST00000352957|MRPL39	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7666320800781	2	440.766178	879.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.44	1	35.44	34.94	35.94	0								0	0	0	1.7419	1	11990	11990		42.474	0	1		+		29970	15572	20526	20598	30361	30361					0.07322392622711504
PVFAFSHSL	9	Unmodified	_PVFAFSHSL_					0	0	0		LTR16D_dup814|chr11:118125155-118125550:+|1.0097989848873832|0.1292670517905187|2.97|478.0|4|1|sense	LTR16D_dup814|chr11:118125155-118125550:+|1.0097989848873832|0.1292670517905187|2.97|478.0|4|1|sense	LTR16D_dup814|chr11:118125155-118125550:+|1.0097989848873832|0.1292670517905187|2.97|478.0|4|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.76275634765625	2	502.763635	1003.51272	-0.068621	-3.45E-05	-2.5192	-0.0012666	-2.5878	-0.0013011	502.7625687438216	31.826	0.37431	31.826	31.685	32.059	0					17	9	3	0	0	0	0.42902	1	11666	11666		40.573	3.4135	1	318560			29971	11338	20527	20599	30362	30362					0.01110088760083272
PVFVLMEQ	8	Unmodified	_PVFVLMEQ_					0	0	0		nc|ENSG00000128683|Q99259-4|GAD1;GAD1|p.W516Gfs*30|1|0.16|ENSG00000128683|chr2:170858824-170858824|T/-|frameshift_variant;ENSG00000128683|ENST00000358196|GAD1	nc|ENSG00000128683|Q99259-4|GAD1	nc|ENSG00000128683|Q99259-4|GAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7520446777344	2	481.754421	961.494289	0.90256	0.00043481	0.5247	0.00025278	1.4273	0.00068759	481.75155876964754	28.943	0.51482	28.943	28.792	29.307	0					38	10	6	0	0	0	0.54629	1	10536	10536		55.504	0	1	3114200			29972	3559	20528	20600	30363	30363					0.012002107938883455
PVGHHDII	8	Unmodified	_PVGHHDII_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2417907714844	2	444.240327	886.466101	-0.48383	-0.00021494	3.142	0.0013958	2.6581	0.0011808	444.2420496886824	24.13	0.31579	24.13	23.958	24.274	0					16	7	4	0	0	0	0.66238	1	7445	7445		39.021	3.8208	1	352660			29973	7364	20529	20601	30364	30364					0.018326489288028824
PVGLAHPQWL	10	Unmodified	_PVGLAHPQWL_					0	0	0		ENSG00000185668|ENST00000373012|POU3F1	ENSG00000185668|ENST00000373012|POU3F1	ENSG00000185668|ENST00000373012|POU3F1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.209716796875	3	373.209948	1116.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.544	1	47.544	47.044	48.044	0								0	0	0	0.4201	1	18971	18971		22.58	8.4425	1				29974	7096	20530	20602	30365	30365					0.054374419511077576
PVHHRRPAPG	10	Unmodified	_PVHHRRPAPG_					0	0	0			REV__ENST00000439649.7_1_10:118030569-118032684:-|nuORF	REV__ENST00000439649.7_1_10:118030569-118032684:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.316650390625	2	562.315223	1122.61589	1.7777	0.00099961	1.0408	0.00058525	2.8185	0.0015849	562.3158099906046	29.759	0.86054	29.759	29.532	30.393	0					47	17	5	0	0	0	0.61887	1	10920	10920		31.955	1.4512	1	1450500	+		29975	18620	20531	20603	30366	30366					0.05949013991244101
PVHLQELDDT	10	Unmodified	_PVHLQELDDT_					0	0	0			REV__ENST00000478809.2_1_10:108360440-108378027:-|nuORF	REV__ENST00000478809.2_1_10:108360440-108378027:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.5279846191406	3	389.527782	1165.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.147	1	32.147	31.647	32.647	0								0	0	0	0.37702	1	11150	11150		37.508	2.3561	1		+		29976	19569	20532	20604	30367	30367					-0.014640874614769928
PVHRPNPL	8	Unmodified	_PVHRPNPL_					0	0	0		SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant	SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2684020996094	2	465.269419	928.524284	-0.82204	-0.00038247	-2.2118	-0.0010291	-3.0339	-0.0014116	465.26882953107764	22.881	0.22109	22.881	22.818	23.039	0					11	7	2	0	0	0	0.64096	1	6817	6817		42.474	0.078325	1	241920			29977	1643	20533	20605	30368	30368					0.05716330574091444
PVHSKIFP	8	Unmodified	_PVHSKIFP_					0	0	0			REV__nc|ENSG00000171811|Q8IYW2-3|CFAP46	REV__nc|ENSG00000171811|Q8IYW2-3|CFAP46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7684631347656	2	462.76872	923.522887	0.78001	0.00036096	-1.41	-0.00065248	-0.62994	-0.00029152	462.7679908532359	29.101	0.56303	29.101	28.893	29.456	0					23	11	3	0	0	0	0.24498	1	10610	10610		110.34	9.1257	1	1471400	+		29978	12439	20534	20606	30369	30369					0.05806696485319662
PVIILASRPY	10	Unmodified	_PVIILASRPY_					0	0	0		tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8428344726562	2	564.842416	1127.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.095	1	41.095	40.595	41.595	0								0	0	0	0.39665	1	16323	16323		31.53	4.8369	1				29979	22657	20535	20607	30370	30370					0.11155168299455909
PVIKLQAP	8	Unmodified	_PVIKLQAP_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.27886962890625	2	433.278921	864.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.453	1	26.453	25.953	26.953	0								0	0	0	1.7419	1	8320	8320		44.531	0	1				29980	5804	20536	20608	30371	30371					0.10559867145127555
PVLACHLLG	9	Unmodified	_PVLACHLLG_					0	0	0		ENST00000262676.9_2_1:51787456-51796919:-|nuORF	ENST00000262676.9_2_1:51787456-51796919:-|nuORF	ENST00000262676.9_2_1:51787456-51796919:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.76348876953125	2	461.762581	921.510608	-0.89804	-0.00041468	3.2026	0.0014788	2.3045	0.0010642	461.764024324871	14.015	0.21384	14.015	13.906	14.12	0					5	4	2	0	0	0	0.60043	1	3557	3557		21.702	0.7554	1	451440			29981	8310	20537	20609	30372	30372					0.046713367506413306
PVLDFKVLVG	10	Unmodified	_PVLDFKVLVG_					0	0	0			REV__ENSG00000173080|ENST00000368318|RXFP4	REV__ENSG00000173080|ENST00000368318|RXFP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.83203125	2	543.831517	1085.64848	1.877	0.0010208	-0.99913	-0.00054336	0.87789	0.00047742	543.8311021280836	19.575	0.45648	19.575	19.481	19.937	0					29	10	4	0	0	0	0.31894	1	5940	5940		82.241	82.241	1	5157800	+		29982	16490	20538	20610	30373	30373					0.10908363550879585
PVLLQFDPE	9	Unmodified	_PVLLQFDPE_					0	0	0		CFAP47|p.G416Efs*26|1|0.04|ENSG00000165164|chrX:35956032-35956033|-/AATATATTTGCTTA|frameshift_variant	CFAP47|p.G416Efs*26|1|0.04|ENSG00000165164|chrX:35956032-35956033|-/AATATATTTGCTTA|frameshift_variant	CFAP47|p.G416Efs*26|1|0.04|ENSG00000165164|chrX:35956032-35956033|-/AATATATTTGCTTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7845458984375	2	529.281857	1056.54916	0.11225	5.9413E-05	0.90846	0.00048083	1.0207	0.00054024	529.2820391479413	40.172	0.38492	40.172	40.038	40.423	0					44	16	3	0	0	0	0.37197	1	15356	15356		44.117	1.7207	1	557850			29983	494	20539	20611	30374	30374					0.023149208661379816
PVLNSHLM	8	Unmodified	_PVLNSHLM_					0	0	0		ENST00000425630.1_1_10:1205876-1208503:+|nuORF;ENST00000583117.1_1_10:1205876-1206669:+|nuORF	ENST00000425630.1_1_10:1205876-1208503:+|nuORF	ENST00000425630.1_1_10:1205876-1208503:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.7444152832031	2	455.744388	909.474223	-0.37489	-0.00017085	0.69029	0.00031459	0.3154	0.00014374	455.7446496074699	23.294	0.12298	23.294	23.249	23.372	0					5	3	2	0	0	0	0.60719	1	6727	6727		47.916	7.343	1	61156			29984	9436	20540	20612	30375	30375					0.015864598539224062
PVMGRDQL	8	Unmodified	_PVMGRDQL_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7392272949219	2	458.23947	914.464386	-2.6464	-0.0012127	-1.6222	-0.00074337	-4.2686	-0.0019561	458.2384794646653	29.612	0.23647	29.612	29.489	29.726	0					9	6	2	0	0	0	0.66372	1	9974	9974		38.806	0	1	245660	+		29985	14678	20541	20613	30376	30376					0.003732718485366604
PVPELLTG	8	Unmodified	_PVPELLTG_					0	0	0		ENSG00000166987|ENST00000355673|MBD6;MBD6|p.R878Pfs*26|1|0.34|ENSG00000166987|chr12:57528369-57528406|GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT/-|frameshift_variant;MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant;MBD6|p.G877Afs*69|1|0.53|ENSG00000166987|chr12:57528367-57528367|G/-|frameshift_variant	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.23883056640625	2	413.239461	824.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.549	1	45.549	45.049	46.049	0								0	0	0	1.7419	1	14656	14656		21.702	0	1				29986	5959	20542	20614	30377	30377					0.045115951201864846
PVPEYQKY	8	Unmodified	_PVPEYQKY_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.26123046875	2	512.260925	1022.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.227	1	38.227	37.727	38.727	0								0	0	0	1.7419	1	14517	14517		35.201	1.0282	1				29987	1089	20543	20615	30378	30378					-0.0030563482238221695
PVPGIQAV	8	Unmodified	_PVPGIQAV_					0	0	0		ENST00000526885.5_1_19:1041282-1042570:+|nuORF	ENST00000526885.5_1_19:1041282-1042570:+|nuORF	ENST00000526885.5_1_19:1041282-1042570:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	390.7332763671875	2	390.734346	779.454139	-2.1992	-0.00085932	-0.83937	-0.00032797	-3.0386	-0.0011873	390.7339569649017	48.052	0.26777	48.052	47.942	48.21	0					27	16	2	0	0	0	0.79293	1	15992	15992		15.636	0.97212	1	183500			29988	10381	20544	20616	30379	30379					0.055590321856129776
PVPGLGGSSNG	11	Unmodified	_PVPGLGGSSNG_					0	0	0		ENST00000419900.5_1_10:96305629-96306155:+|nuORF	ENST00000419900.5_1_10:96305629-96306155:+|nuORF	ENST00000419900.5_1_10:96305629-96306155:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.23797607421875	2	471.237981	940.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.001	1	17.001	16.501	17.501	0								0	0	0	0.40668	1	4973	4973		35.618	12.576	1				29989	9389	20545	20617	30380	30380					-0.011202800046021366
PVPIGSSLQN	10	Unmodified	_PVPIGSSLQN_					0	0	0			REV__STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant	REV__STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2795715332031	2	506.277106	1010.53966	2.937	0.0014869	-2.085	-0.0010556	0.85195	0.00043132	506.27605163098673	39.6	0.50766	39.6	39.317	39.825	0					30	11	4	0	0	0	0.43008	1	15586	15586		52.937	0.63753	1	1415600	+		29990	13910	20546	20618	30381	30381					0.03481152580627622
PVPLVKES	8	Unmodified	_PVPLVKES_					0	0	0			REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENSG00000072858|ENST00000264852|SIDT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7589416503906	2	434.760561	867.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.676	1	50.676	50.176	51.176	0								0	0	0	1.7419	1	18957	18957		21.702	1.2205	1		+		29991	13201	20547	20619	30382	30382					0.06751570528570028
PVPPEQRP	8	Unmodified	_PVPPEQRP_					0	0	0		ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENSG00000167522|ENST00000301030|ANKRD11	ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2555236816406	2	460.253434	918.492316	-0.8901	-0.00040967	0.14168	6.5208E-05	-0.74842	-0.00034446	460.2535265132926	27.469	0.61098	27.469	27.327	27.938	0					58	21	4	0	0	0	0.8006	1	8857	8857		20.482	0	1	2465400			29992	5996	20548	20620	30383	30383					0.029809181002860896
PVPPGLGT	8	Unmodified	_PVPPGLGT_					0	0	0			REV__ENST00000250916.5_1_19:1853189-1853714:-|nuORF	REV__ENST00000250916.5_1_19:1853189-1853714:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.211181640625	2	369.213246	736.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.811	1	44.811	44.311	45.311	0								0	0	0	1.7419	1	17952	17952		44.531	14.69	1		+		29993	17964	20549	20621	30384	30384					0.03319056777240803
PVPPHPGL	8	Unmodified	_PVPPHPGL_					0	0	0		nc|ENSG00000226950|P0C864|DANCR	nc|ENSG00000226950|P0C864|DANCR	nc|ENSG00000226950|P0C864|DANCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.2347106933594	2	407.234513	812.454474	1.1655	0.00047463	-1.2089	-0.00049231	-0.043398	-1.7673E-05	407.23415665148417	38.985	0.13695	38.985	38.919	39.056	0					6	4	2	0	0	0	0.77013	1	15326	15326		24.504	0	1	100200			29994	11774	20550	20622	30385	30385					0.04074451905466958
PVPPRPNLYA	10	Unmodified	_PVPPRPNLYA_					0	0	0			REV__NEU2|p.A317V|1|0.44|ENSG00000115488|chr2:233034864-233034864|C/T|missense_variant	REV__NEU2|p.A317V|1|0.44|ENSG00000115488|chr2:233034864-233034864|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.3167724609375	2	562.316566	1122.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.603	1	29.603	29.103	30.103	0								0	0	0	0.37276	1	9979	9979		38.806	9.6566	1		+		29995	21283	20551	20623	30386	30386					0.06217424605574706
PVPTERLEQ	9	Unmodified	_PVPTERLEQ_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7898559570312	2	534.787838	1067.56112	3.3734	0.0018041	0.73241	0.00039168	4.1058	0.0021957	534.7882761667972	30.466	0.35446	30.466	30.359	30.714	0					19	7	3	0	0	0	0.034359	1	11292	11292		104.75	19.831	1	1693000			29996	8020	20552	20624	30387	30387					0.03004537609331237
PVPVGDTS	8	Unmodified	_PVPVGDTS_					0	0	0		IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant;ENSG00000081148|ENST00000193391|IMPG2	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.1978454589844	2	386.197793	770.381034	0.54709	0.00021128	-0.75128	-0.00029014	-0.20419	-7.8856E-05	386.19750994677946	17.882	0.2419	17.882	17.768	18.01	0					10	6	2	0	0	0	0.70055	1	4333	4333		33.516	0	1	98239			29997	1655	20553	20625	30388	30388					-0.01334141327663474
PVPVGDTS	8	Unmodified	_PVPVGDTS_					0	0	0		IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant;ENSG00000081148|ENST00000193391|IMPG2	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.19781494140625	2	386.197793	770.381034	0.14265	5.5091E-05	0.055381	2.1388E-05	0.19803	7.6479E-05	386.1978046392071	18.097	0.16801	18.097	17.988	18.156	0					6	3	2	0	0	0	0.70055	1	5509	5509		33.516	5.2613	1	761870			29998	1655	20553	20625	30389	30389					-0.01334141327663474
PVPVGDTS	8	Unmodified	_PVPVGDTS_					0	0	0		IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant;ENSG00000081148|ENST00000193391|IMPG2	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.19769287109375	2	386.197793	770.381034	0.5555	0.00021453	-1.0568	-0.00040814	-0.50133	-0.00019361	386.19738285328816	18.117	0.3561	18.117	17.867	18.223	0					12	7	3	0	0	0	0.64096	1	5349	5349		42.474	1.9018	1	1280600			29999	1655	20553	20625	30390	30390					-0.01334141327663474
PVPYGSLQLA	10	Unmodified	_PVPYGSLQLA_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7884521484375	2	522.78985	1043.56515	1.6248	0.00084943	-1.4992	-0.00078379	0.12556	6.5641E-05	522.7890679797323	41.76	0.59945	41.76	41.477	42.076	0					31	16	2	0	0	0	0.63073	1	16569	16569		30.504	2.4222	1	108150			30000	3651	20554	20626	30391	30391					0.045106271030590506
PVQPSPGGGER	11	Unmodified	_PVQPSPGGGER_					0	0	0		ENST00000502773.5_1_4:157892054-157892213:-|nuORF	ENST00000502773.5_1_4:157892054-157892213:-|nuORF	ENST00000502773.5_1_4:157892054-157892213:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.27685546875	2	540.775262	1079.53597	0.038508	2.0824E-05	0.49374	0.000267	0.53224	0.00028782	540.7756315315105	30.479	0.21171	30.479	30.383	30.595	0					20	7	3	0	0	0	0.27742	1	9999	9999		65.157	0.94998	1	332580			30001	10161	20555	20627	30392	30392					-0.000615171932395242
PVQPSPGGGER	11	Unmodified	_PVQPSPGGGER_					0	0	0		ENST00000502773.5_1_4:157892054-157892213:-|nuORF	ENST00000502773.5_1_4:157892054-157892213:-|nuORF	ENST00000502773.5_1_4:157892054-157892213:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7755737304688	2	540.775262	1079.53597	2.0801	0.0011248	-1.1556	-0.00062495	0.92441	0.0004999	540.7748627612732	30.674	0.60926	30.674	30.517	31.126	0					23	12	4	0	0	0	0.057669	1	11370	11370		101.46	5.6447	1	1941900			30002	10161	20555	20627	30393	30393					-0.000615171932395242
PVQSRAERDL	10	Unmodified	_PVQSRAERDL_					0	0	0			REV__ENST00000473661.5_1_3:9867594-9876502:+|nuORF	REV__ENST00000473661.5_1_3:9867594-9876502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.8129272460938	2	585.814919	1169.61528	0.075884	4.4454E-05	-3.5903	-0.0021032	-3.5144	-0.0020588	585.8121848977423	34.346	0.50547	34.346	33.987	34.493	0					20	12	3	0	0	0	0.68774	1	12718	12718		23.523	0.94304	1	207700	+		30003	19508	20556	20628	30394	30394					0.03726129760912045
PVRGWPAA	8	Unmodified	_PVRGWPAA_					0	0	0		ENST00000429770.5_2_3:50402382-50403264:-|nuORF;ENST00000483620.1_1_3:50402099-50403170:-|nuORF	ENST00000429770.5_2_3:50402382-50403264:-|nuORF	ENST00000429770.5_2_3:50402382-50403264:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	285.1620788574219	3	285.160817	852.460622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.257	1	48.257	47.757	48.757	0								0	0	0	1.7419	1	18305	18305		12.207	0.69583	1				30004	9478	20557	20629	30395	30395					0.02848970136983553
PVRLGTDR	8	Unmodified	_PVRLGTDR_					0	0	0			REV__ENSG00000163352|ENST00000392487|LENEP	REV__ENSG00000163352|ENST00000392487|LENEP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2637939453125	2	457.264333	912.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.407	1	47.407	46.907	47.907	0								0	0	0	1.7419	1	14521	14521		24.203	4.8428	1		+		30005	15874	20558	20630	30396	30396					0.05435722848858404
PVRPFGPPGPP	11	Unmodified	_PVRPFGPPGPP_					0	0	0			REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.2100830078125	3	373.209948	1116.60801	-1.0527	-0.00039289	0.57004	0.00021275	-0.48269	-0.00018015	373.21028321656485	22.075	1.6596	22.075	21.889	23.549	0					114	54	4	0	0	0	0.75945	1	6740	6740		14.086	0	1	6157800	+		30006	12302	20559	20631	30397	30397					0.05437441951130495
PVRRESAGA	9	Unmodified	_PVRRESAGA_					0	0	0		nc|ENSG00000213619|O75489-2|NDUFS3;ENSG00000213619|ENST00000263774|NDUFS3;ENST00000531351.1_1_11:47600840-47602405:+|nuORF;ENST00000533105.1_1_11:47600795-47602306:+|nuORF	nc|ENSG00000213619|O75489-2|NDUFS3	nc|ENSG00000213619|O75489-2|NDUFS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.75933837890625	2	471.759415	941.504277	-0.12373	-5.837E-05	-0.49115	-0.0002317	-0.61487	-0.00029007	471.759276612413	17.174	0.1189	17.174	17.115	17.234	0					4	2	2	0	0	0	0.5879	1	5066	5066		23.042	2.0956	1	101770			30007	7793	20560	20632	30398	30398					0.03118534843474663
PVSEPLPFA	9	Unmodified	_PVSEPLPFA_					0	0	0			REV__DENND4B|p.P955Lfs*5|1|0.53|ENSG00000198837|chr1:153934212-153934212|G/-|frameshift_variant	REV__DENND4B|p.P955Lfs*5|1|0.53|ENSG00000198837|chr1:153934212-153934212|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7581481933594	2	478.758018	955.501483	-0.11612	-5.5592E-05	0.88212	0.00042232	0.766	0.00036673	478.75847768042	14.459	0.10372	14.459	14.376	14.48	0					4	2	2	0	0	0	0.49003	1	3751	3751		33.516	4.366	1	64300	+		30008	12695	20561	20633	30399	30399					0.02195266665944473
PVSPRRTT	8	Unmodified	_PVSPRRTT_					0	0	0		nc|ENSG00000158321|Q8WXX7-5|AUTS2;nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2646789550781	2	457.264333	912.514114	0.048747	2.229E-05	0.4106	0.00018775	0.45935	0.00021005	457.26441415680983	47.456	0.87988	47.456	47.303	48.183	0					64	56	2	0	0	0	0.70055	1	15107	15107		33.516	5.2613	1	66994			30009	5255	20562	20634	30400	30400					0.054357228488470355
PVSQTPSSGQV	11	Unmodified	_PVSQTPSSGQV_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-4|PAN3;ENST00000503791.5_1_13:28712794-28846220:+|nuORF;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7752075195312	2	543.774928	1085.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.569	1	16.569	16.069	17.069	0								0	0	0	0.44222	1	4760	4760		24.519	14.254	1				30010	5016	20563	20635	30401	30401					-0.004043566329301029
PVSSAQYENEK	11	Unmodified	_PVSSAQYENEK_					0	0	0			REV__nc|ENSG00000103313|O15553-1|MEFV	REV__nc|ENSG00000103313|O15553-1|MEFV	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	626.2957763671875	2	626.296224	1250.5779	-0.0047955	-3.0034E-06	-0.62214	-0.00038965	-0.62694	-0.00039265	626.2957842012522	14.015	0.11712	14.015	13.957	14.074	0					6	2	3	0	0	0	0.59078	1	3559	3559		28.081	0	1	290330	+		30011	13673	20564	20636	30402	30402					-0.037370062954096284
PVSTGILDGY	10	Unmodified	_PVSTGILDGY_					0	0	0			REV__CTTNBP2|p.A368T|1|0.28|ENSG00000077063|chr7:117792094-117792094|C/T|missense_variant	REV__CTTNBP2|p.A368T|1|0.28|ENSG00000077063|chr7:117792094-117792094|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2641296386719	2	511.263665	1020.51278	0.019951	1.02E-05	0.83501	0.00042691	0.85496	0.00043711	511.2642845661983	44.023	0.13762	44.023	43.934	44.072	0					8	5	2	0	0	0	0.61187	1	17652	17652		32.812	6.0163	1	36975	+		30012	12649	20565	20637	30403	30403					0.003340439694284214
PVSVMSYRI	9	Unmodified	_PVSVMSYRI_					0	0	0			REV__ENSG00000078898|ENST00000170150|BPIFB2	REV__ENSG00000078898|ENST00000170150|BPIFB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2844848632812	2	526.283877	1050.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.341	1	46.341	45.841	46.841	0								0	0	0	0.3368	1	18546	18546		27.882	4.8398	1		+		30013	13275	20566	20638	30404	30404					0.02994687088221326
PVTELKDTY	9	Unmodified	_PVTELKDTY_					0	0	0			REV__ENSG00000181585|ENST00000643606|TMIE	REV__ENSG00000181585|ENST00000643606|TMIE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7804565429688	2	533.276772	1064.53899	0.14342	7.6483E-05	0.57007	0.000304	0.71349	0.00038049	533.7795839263782	31.871	0.33602	31.871	31.723	32.059	0					19	8	4	0	0	0	0.53083	1	11662	11662		29.15	0	1	347410	+		30014	16853	20567	20639	30405	30405					0.009303131409069465
PVTHTKIDW	9	Unmodified	_PVTHTKIDW_					0	0	0		CAPZA1|p.R266H|1|0.08|ENSG00000116489|chr1:112670068-112670068|G/A|missense_variant	CAPZA1|p.R266H|1|0.08|ENSG00000116489|chr1:112670068-112670068|G/A|missense_variant	CAPZA1|p.R266H|1|0.08|ENSG00000116489|chr1:112670068-112670068|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7930297851562	2	548.792924	1095.57129	0.5004	0.00027462	-0.059667	-3.2745E-05	0.44074	0.00024187	548.7929470630319	42.131	0.22744	42.131	42.037	42.265	0					19	11	2	0	0	0	0.25109	1	15964	15964		55.504	0	1	133720			30015	370	20568	20640	30406	30406					0.027331453345595946
PVVAGPAL	8	Unmodified	_PVVAGPAL_					0	0	0			REV__nc|ENSG00000137221|Q5JTD0-2|TJAP1	REV__nc|ENSG00000137221|Q5JTD0-2|TJAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.2221984863281	2	362.223614	722.432676	-2.0507	-0.00074283	-1.5813	-0.0005728	-3.6321	-0.0013156	362.2229428736575	48.296	0.25174	48.296	48.188	48.44	0					22	15	2	0	0	0	0.79462	1	16047	16047		16.705	0	1	93607	+		30016	14911	20569	20641	30407	30407					0.060356471568866255
PVVFDVALS	9	Unmodified	_PVVFDVALS_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	316.1803894042969	3	316.179654	945.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.278	1	44.278	43.778	44.778	0								0	0	0	0.37146	1	17742	17742		14.137	0.68308	1		+		30017	16397	20570	20642	30408	30408					0.04219553183008884
PVVHLAVL	8	Unmodified	_PVVHLAVL_					0	0	0		ENST00000470902.5_1_9:130911720-130912803:+|nuORF	ENST00000470902.5_1_9:130911720-130912803:+|nuORF	ENST00000470902.5_1_9:130911720-130912803:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.2738342285156	2	424.273638	846.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.773	1	25.773	25.273	26.273	0								0	0	0	1.7419	1	8060	8060		16.705	6.5202	1				30018	9846	20571	20643	30409	30409					0.10331884490699395
PWAGPQEG	8	Unmodified	_PWAGPQEG_					0	0	0			REV__ENSG00000167393|ENST00000390665|PPP2R3B	REV__ENSG00000167393|ENST00000390665|PPP2R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.19305419921875	2	421.195585	840.376617	-2.5447	-0.0010718	-3.7178	-0.0015659	-6.2625	-0.0026377	421.1941971983372	14.791	0.067656	14.791	14.745	14.813	0					5	3	2	0	0	0	0.79293	1	3205	3205		15.636	0.97212	1	42308	+		30019	16189	20572	20644	30410	30410					-0.04995605750582399
PWCPLDLR	8	Carbamidomethyl (C)	_PWC(Carbamidomethyl (C))PLDLR_	PWC(1)PLDLR		PWC(68)PLDLR		0	1	0		ENSG00000151503|ENST00000534548|NCAPD3;NCAPD3|p.A322Lfs*24|1|0.31|ENSG00000151503|chr11:134206654-134206654|G/-|frameshift_variant;NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.77001953125	2	528.768394	1055.52224	3.4598	0.0018294	-0.32552	-0.00017213	3.1343	0.0016573	528.7681909384602	17.708	0.16987	17.708	17.598	17.767	0					7	3	3	0	0	0	0.41952	1	5168	5168		68.485	68.485	1	1079000			30020	4972	20573	20645	30411	30411	203				-0.0033046622602341813
PWISSFWGL	9	Unmodified	_PWISSFWGL_					0	0	0		ENSG00000176900|ENST00000322049|OR51T1	ENSG00000176900|ENST00000322049|OR51T1	ENSG00000176900|ENST00000322049|OR51T1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.8547668457031	3	364.855282	1091.54402	-0.96792	-0.00035315	0.14888	5.4318E-05	-0.81905	-0.00029883	364.8553005931588	29.488	0.24857	29.488	29.377	29.625	0					15	9	2	0	0	0	0.45358	1	9599	9599		37.159	10.466	1	140990			30021	6630	20574	20646	30412	30412					0.0019066179418132378
PWLCLGLGLAS	11	Unmodified	_PWLCLGLGLAS_					0	0	0		ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3077392578125	2	565.307352	1128.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.401	1	39.401	38.901	39.901	0								0	0	0	0.44116	1	13247	13247		27.882	0	1				30022	1034	20575	20647	30413	30413					0.04099546639349683
PWLLQNQP	8	Unmodified	_PWLLQNQP_					0	0	0			REV__ENST00000467808.5_1_X:100878865-100879856:+|nuORF	REV__ENST00000467808.5_1_X:100878865-100879856:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.5155334472656	3	332.515148	994.523616	-0.6675	-0.00022195	0.39709	0.00013204	-0.27041	-8.9916E-05	332.51539728085595	32.907	0.16547	32.907	32.824	32.989	0					11	6	2	0	0	0	0.79176	1	11008	11008		17.365	0	1	80074	+		30023	19431	20576	20648	30414	30414					0.02613491134366086
PWLNPSCL	8	Unmodified	_PWLNPSCL_					0	0	0			REV__nc|ENSG808|P60509|ERVPABLB-1	REV__nc|ENSG808|P60509|ERVPABLB-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2270812988281	2	465.231113	928.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.438	1	24.438	23.938	24.938	0								0	0	0	1.7419	1	7619	7619		38.806	8.3025	1		+		30024	21266	20577	20649	30415	30415					-0.019412290374248187
PWLYSQGGCP	10	Unmodified	_PWLYSQGGCP_					0	0	0			REV__nc|ENSG00000013573|Q96FC9|DDX11	REV__nc|ENSG00000013573|Q96FC9|DDX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.251220703125	2	554.250034	1106.48552	-1.1372	-0.0006303	1.3445	0.00074521	0.20732	0.00011491	554.2527469808753	35.818	0.15777	35.818	35.773	35.931	0					8	6	2	0	0	0	0.65213	1	12784	12784		27.882	2.3082	1	41662	+		30025	20923	20578	20650	30416	30416					-0.06346762842599674
PWPENFQY	8	Unmodified	_PWPENFQY_					0	0	0		L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|265|2|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|265|2|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|265|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.744384765625	2	540.742899	1079.47125	-0.12891	-6.9704E-05	2.0243	0.0010946	1.8954	0.0010249	540.7439207138926	13.473	0.10101	13.473	13.433	13.534	0					8	5	2	0	0	0	0.78122	1	2775	2775		8.2313	0.54101	1	131300			30026	11300	20579	20651	30417	30417					-0.06531091999227101
PWPRGAGPG	9	Unmodified	_PWPRGAGPG_					0	0	0			REV__ENST00000550646.2_1_14:20137708-20137885:+|nuORF	REV__ENST00000550646.2_1_14:20137708-20137885:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7396545410156	2	447.732669	893.450785	2.5588	0.0011457	2.0751	0.00092911	4.634	0.0020748	447.7336893673517	12.721	0.13345	12.721	12.64	12.773	0					7	3	3	0	0	0	0.61124	1	2751	2751		12.959	3.4886	1	366110	+		30027	15652	20580	20652	30418	30418					-0.0002021786838213302
PWPRPPRPAS	10	Unmodified	_PWPRPPRPAS_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.82080078125	2	580.819807	1159.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.871	1	20.871	20.371	21.371	0								0	0	0	0.4201	1	5899	5899		16.473	1.6083	1		+		30028	21303	20581	20653	30419	30419					0.051633625569365904
PWSASPQQL	9	Unmodified	_PWSASPQQL_					0	0	0			REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.25628662109375	2	507.256174	1012.49779	0.16272	8.2542E-05	-0.12462	-6.3212E-05	0.038107	1.933E-05	507.2561412877599	26.49	0.5693	26.49	26.326	26.895	0					24	11	3	0	0	0	0.2873	1	9476	9476		51.335	0	1	299610	+		30029	19696	20582	20654	30420	30420					-0.007954031079066226
PWVKSPPLLM	10	Oxidation (M)	_PWVKSPPLLM(Oxidation (M))_		PWVKSPPLLM(1)		PWVKSPPLLM(60)	0	0	1		ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant;ANKRD34B|p.V479Sfs*11|1|0.27|ENSG00000189127|chr5:80558585-80558586|-/T|frameshift_variant;ENSG00000189127|ENST00000338682|ANKRD34B	ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant	ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.2228698730469	3	395.222977	1182.6471	0.58043	0.0002294	-1.1389	-0.00045011	-0.55844	-0.00022071	395.22262111385135	16.541	0.11234	16.541	16.503	16.616	0					7	3	3	0	0	0	0.36647	1	3792	3792		59.931	6.9179	1	530320			30030	158	20583	20655	30421	30421		11			0.06308406190464666
PWVKSPPLLM	10	Oxidation (M)	_PWVKSPPLLM(Oxidation (M))_		PWVKSPPLLM(1)		PWVKSPPLLM(69)	0	0	1		ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant;ANKRD34B|p.V479Sfs*11|1|0.27|ENSG00000189127|chr5:80558585-80558586|-/T|frameshift_variant;ENSG00000189127|ENST00000338682|ANKRD34B	ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant	ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.222900390625	3	395.222977	1182.6471	0.90242	0.00035666	-0.99845	-0.00039461	-0.096036	-3.7956E-05	395.22264540718646	16.822	0.56875	16.822	16.705	17.273	0					30	14	4	0	0	0	0.28675	1	4630	4630		68.846	10.961	1	7335600			30031	158	20583	20655	30422	30422		11			0.06308406190464666
PWWVLIGM	8	Unmodified	_PWWVLIGM_					0	0	0		ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant;ADAMTSL3|p.F1172Yfs*20|1|0.12|ENSG00000156218|chr15:83983142-83983143|-/A|frameshift_variant;ADAMTSL3|p.R1207Gfs*32|1|0.3|ENSG00000156218|chr15:83983243-83983243|A/-|frameshift_variant;ADAMTSL3|p.H1300Ifs*18|1|0.33|ENSG00000156218|chr15:83991138-83991138|C/-|frameshift_variant;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3;ENST00000569510.5_1_15:84323016-84530322:+|nuORF;ADAMTSL3|p.F477*|1|0.29|ENSG00000156218|chr15:83892848-83892849|TG/-|frameshift_variant	ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.26580810546875	2	501.267499	1000.52044	-0.045289	-2.2702E-05	-1.872	-0.00093837	-1.9173	-0.00096108	501.2665886181042	19.254	0.34538	19.254	18.993	19.338	0					16	10	2	0	0	0	0.70073	1	4912	4912		33.493	3.1753	1	133860			30032	63	20584	20656	30423	30423					0.02020524756028408
PYADQVFRI	9	Unmodified	_PYADQVFRI_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7935791015625	2	554.792924	1107.57129	1.821	0.0010103	0.62422	0.00034631	2.4452	0.0013566	555.2946299144072	44.587	0.18283	44.587	44.53	44.713	0					10	7	2	0	0	0	0.13267	1	17859	17859		71.877	21.853	1	77113			30033	7546	20585	20657	30424	30424					0.021811453345662812
PYELSSSLEQG	11	Unmodified	_PYELSSSLEQG_					0	0	0			REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|213|1|anti-sense	REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|213|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	605.2858276367188	2	605.285325	1208.5561	3.0032	0.0018178	-0.97789	-0.0005919	2.0253	0.0012259	605.2848064592896	12.955	0.52701	12.955	12.715	13.242	0					20	11	3	0	0	0	0.82504	1	2875	2875		9.7057	0.52274	1	689130	+		30034	20824	20586	20658	30425	30425					-0.039838110439632146
PYFYGDRM	8	Unmodified	_PYFYGDRM_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;ENST00000465910.5_1_10:50154093-50174894:+|nuORF	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7301025390625	2	524.731477	1047.4484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.022	1	15.022	14.522	15.522	0								0	0	0	1.7419	1	3288	3288		25.45	1.2474	1				30035	3562	20587	20659	30426	30426					-0.07342434388374386
PYGSPGAPGI	10	Unmodified	_PYGSPGAPGI_					0	0	0		COL28A1|p.D436Ifs*2|1|0.26|ENSG00000215018|chr7:7456109-7456109|C/-|frameshift_variant;nc|ENSG00000215018|Q2UY09-2|COL28A1;COL28A1|p.V898Wfs*18|1|0.41|ENSG00000215018|chr7:7373215-7373215|T/-|frameshift_variant;COL28A1|p.N938Mfs*12|1|0.15|ENSG00000215018|chr7:7373093-7373093|T/-|frameshift_variant;ENSG00000215018|ENST00000399429|COL28A1	COL28A1|p.D436Ifs*2|1|0.26|ENSG00000215018|chr7:7456109-7456109|C/-|frameshift_variant	COL28A1|p.D436Ifs*2|1|0.26|ENSG00000215018|chr7:7456109-7456109|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2325134277344	2	458.232168	914.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.824	1	29.824	29.324	30.324	0								0	0	0	0.40002	1	9744	9744		30.504	0	1				30036	606	20588	20660	30427	30427					-0.010864770279454206
PYIIHTVLY	9	Unmodified	_PYIIHTVLY_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8160400390625	2	559.815867	1117.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.654	1	45.654	45.154	46.154	0								0	0	0	0.053019	1	18290	18290		85.359	32.423	1				30037	3506	20589	20661	30428	30428					0.06307790516802925
PYINRMAFP	9	Unmodified	_PYINRMAFP_					0	0	0			REV__ENSG00000271321|ENST00000470691|CTAGE6	REV__ENSG00000271321|ENST00000470691|CTAGE6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7898559570312	2	554.784044	1107.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.299	1	44.299	43.799	44.799	0								0	0	0	0.20652	1	17749	17749		50.025	5.4935	1		+		30038	17809	20590	20662	30429	30429					0.004061068080773111
PYKAEVSRT	9	Unmodified	_PYKAEVSRT_					0	0	0		ICK|p.T348M|1|0.17|ENSG00000112144|chr6:53013771-53013771|G/A|missense_variant;ENSG00000112144|ENST00000676107|CILK1	ICK|p.T348M|1|0.17|ENSG00000112144|chr6:53013771-53013771|G/A|missense_variant	ICK|p.T348M|1|0.17|ENSG00000112144|chr6:53013771-53013771|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8587646484375	3	350.857463	1049.55056	3.0377	0.0010658	0.62843	0.00022049	3.6661	0.0012863	350.8577069905527	30.465	0.65304	30.465	30.309	30.962	0					39	13	5	0	0	0	0.071197	1	11268	11268		82.75	0	1	8336700			30039	2717	20591	20663	30430	30430					0.027765549549030766
PYKFIPSLH	9	Unmodified	_PYKFIPSLH_					0	0	0			REV__ENST00000296785.7_1_5:72858732-72861025:-|nuORF	REV__ENST00000296785.7_1_5:72858732-72861025:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.8731994628906	3	367.874565	1100.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.195	1	27.195	26.695	27.695	0								0	0	0	0.25587	1	9471	9471		42.864	12.295	1		+		30040	18184	20592	20664	30431	30431					0.055589237196272734
PYKHYSAGSF	10	Unmodified	_PYKHYSAGSF_					0	0	0			REV__TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	REV__TMEM232|p.N394Ifs*13|3|0.32|ENSG00000186952|chr5:110605204-110605204|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.776611328125	2	578.774731	1155.53491	3.2585	0.0018859	-0.23253	-0.00013458	3.026	0.0017514	578.774635127488	41.104	0.79337	41.104	40.606	41.4	0					46	16	4	0	0	0	0.24256	1	16290	16290		74.255	74.255	1	1317300	+		30041	17100	20593	20665	30432	30432					-0.03663731562164685
PYLAHAAPD	9	Unmodified	_PYLAHAAPD_					0	0	0			REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.7373046875	2	477.737617	953.460681	0.84173	0.00040213	-2.8655	-0.001369	-2.0238	-0.00096682	477.7365472719185	34.494	0.30785	34.494	34.327	34.635	0					17	6	3	0	0	0	0.21116	1	13234	13234		60.294	15.763	1	318880	+		30042	14357	20594	20666	30433	30433					-0.01791074653681335
PYLISGSKF	9	Unmodified	_PYLISGSKF_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;TTLL4|p.H753Y|1|0.07|ENSG00000135912|chr2:218747604-218747604|C/T|missense_variant;ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2789611816406	2	506.279118	1010.54368	1.2555	0.00063561	-2.5363	-0.0012841	-1.2809	-0.00064847	506.27775095197376	39.43	0.6787	39.43	39.157	39.835	0					23	15	2	0	0	0	0.048471	1	15593	15593		95.815	32.509	1	361790			30043	4032	20595	20667	30434	30434					0.03883242074334703
PYLKAASGLAG	11	Unmodified	_PYLKAASGLAG_					0	0	0		ENST00000373115.4_1_10:73769153-73769792:+|nuORF	ENST00000373115.4_1_10:73769153-73769792:+|nuORF	ENST00000373115.4_1_10:73769153-73769792:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2957763671875	2	524.295299	1046.57605	1.6258	0.00085241	-3.1974	-0.0016764	-1.5716	-0.00082399	524.2947010118345	38.501	0.20028	38.501	38.393	38.594	0					7	4	2	0	0	0	0.47622	1	15150	15150		45.972	1.8554	1	69254			30044	8989	20596	20668	30435	30435					0.05462029477325814
PYLRIEQF	8	Unmodified	_PYLRIEQF_					0	0	0		NEURL2|p.C195Afs*63|1|0.37|ENSG00000124257|chr20:45890409-45890409|A/-|frameshift_variant;ENSG00000124257|ENST00000372518|NEURL2	NEURL2|p.C195Afs*63|1|0.37|ENSG00000124257|chr20:45890409-45890409|A/-|frameshift_variant	NEURL2|p.C195Afs*63|1|0.37|ENSG00000124257|chr20:45890409-45890409|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2904663085938	2	533.290017	1064.56548	0.13723	7.3181E-05	0.96189	0.00051297	1.0991	0.00058615	533.2901854196755	39.258	0.28287	39.258	39.151	39.434	0					16	9	2	0	0	0	0.30437	1	14939	14939		71.378	12.596	1	262280			30045	3363	20597	20669	30436	30436					0.03578046822894976
PYLSVCRK	8	Unmodified	_PYLSVCRK_					0	0	0			REV__nc|ENSG00000108018|Q8WY21-4|SORCS1	REV__nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.74951171875	2	483.265487	964.516422	2.4185	0.0011688	-0.57825	-0.00027945	1.8403	0.00088934	483.2651824154967	12.721	0.45552	12.721	12.64	13.095	0					19	10	4	0	0	0	0.76283	1	2878	2878		25.45	1.2474	1	3783700	+		30046	20967	20598	20670	30437	30437					0.032744352623012674
PYLVHRRN	8	Unmodified	_PYLVHRRN_					0	0	0			REV__ENSG00000188624|ENST00000341415|IGFL3	REV__ENSG00000188624|ENST00000341415|IGFL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.8003540039062	2	527.798875	1053.5832	3.4737	0.0018334	-0.65326	-0.00034479	2.8205	0.0014886	527.7984678702426	39.726	0.36494	39.726	39.592	39.957	0					17	8	3	0	0	0	0.54629	1	15730	15730		54.765	54.765	1	1250400	+		30047	17179	20599	20671	30438	30438					0.05854806868410378
PYMAKFVVF	9	Unmodified	_PYMAKFVVF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;ANK3|p.K3778Nfs*26|1|0.37|ENSG00000151150|chr10:60069547-60069547|T/-|frameshift_variant;ANK3|p.M3608Cfs*4|1|0.37|ENSG00000151150|chr10:60070059-60070059|T/-|frameshift_variant;ANK3|p.K3331Nfs*6|1|0.32|ENSG00000151150|chr10:60070888-60070888|T/-|frameshift_variant;ANK3|p.I3117Sfs*2|3|0.22|ENSG00000151150|chr10:60071532-60071532|T/-|frameshift_variant;ANK3|p.I2751Yfs*21|1|0.07|ENSG00000151150|chr10:60072630-60072630|T/-|frameshift_variant;ANK3|p.P2846Tfs*8|1|0.32|ENSG00000151150|chr10:60072346-60072347|-/C|frameshift_variant;ANK3|p.I2751Nfs*14|2|0.36|ENSG00000151150|chr10:60072629-60072630|-/T|frameshift_variant;ANK3|p.K2612Rfs*25|1|0.43|ENSG00000151150|chr10:60073046-60073046|T/-|frameshift_variant;ANK3|p.L1778Tfs*66|1|0.38|ENSG00000151150|chr10:60075550-60075551|-/G|frameshift_variant;nc|ENSG00000151150|Q12955-6|ANK3;ANK2|p.V1324I|2|0.27|ENSG00000145362|chr4:113341764-113341764|G/A|missense_variant;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.N1476Mfs*12|1|0.21|ENSG00000145362|chr4:113350244-113350244|A/-|frameshift_variant;ANK2|p.E1746*|1|0.07|ENSG00000145362|chr4:113353848-113353849|-/C|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.R2581Efs*5|1|0.41|ENSG00000145362|chr4:113356352-113356353|-/A|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2950439453125	2	551.293714	1100.57287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.505	1	51.505	51.005	52.005	0								0	0	0	0.28164	1	20140	20140		38.806	3.6054	1				30048	148;4668	20600	20672	30439	30439					0.026610630989580386
PYMNQGKH	8	Unmodified	_PYMNQGKH_					0	0	0			REV__WDR93|p.F467L|1|0.32|ENSG00000140527|chr15:89733076-89733076|C/A|missense_variant	REV__WDR93|p.F467L|1|0.32|ENSG00000140527|chr15:89733076-89733076|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7297668457031	2	487.729269	973.443985	-0.70374	-0.00034323	1.5437	0.00075292	0.83999	0.00040969	487.73009265998604	43.097	0.11269	43.097	43.035	43.148	0					9	5	2	0	0	0	0.75243	1	16880	16880		26.796	0	1	49453	+		30049	15079	20601	20673	30440	30440					-0.04379898811271232
PYPKAVAQA	9	Unmodified	_PYPKAVAQA_					0	0	0			REV__ENST00000248451.7_1_2:219137510-219137657:+|nuORF	REV__ENST00000248451.7_1_2:219137510-219137657:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7613525390625	2	472.763635	943.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.123	1	16.123	15.623	16.623	0								0	0	0	0.27025	1	3806	3806		40.778	2.0246	1		+		30050	17956	20602	20674	30441	30441					0.038700887600725764
PYPKHQLV	8	Unmodified	_PYPKHQLV_					0	0	0			REV__ENST00000383791.7_1_3:15296828-15296978:-|nuORF	REV__ENST00000383791.7_1_3:15296828-15296978:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2796630859375	2	491.279452	980.544351	2.6891	0.0013211	-2.4477	-0.0012025	0.24142	0.00011861	491.27830164940127	45.329	0.21307	45.329	45.231	45.444	0					14	9	2	0	0	0	0.74117	1	18132	18132		28.254	0	1	68596	+		30051	18802	20603	20675	30442	30442					0.05330081514034646
PYPSPGPYPV	10	Unmodified	_PYPSPGPYPV_					0	0	0		ENST00000604292.1_1_6:101337865-101338153:+|nuORF	ENST00000604292.1_1_6:101337865-101338153:+|nuORF	ENST00000604292.1_1_6:101337865-101338153:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.269287109375	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.91	1	38.91	38.41	39.41	0								0	0	0	0.37276	1	12669	12669		38.806	8.3025	1				30052	11062	20604	20676	30443	30443					-0.010413483053525852
PYQVNKAL	8	Unmodified	_PYQVNKAL_					0	0	0			REV__ENSG00000226430|ENST00000530447|USP17L7	REV__ENSG00000226430|ENST00000530447|USP17L7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.76361083984375	2	466.763635	931.512717	0.636	0.00029686	-0.5683	-0.00026526	0.067698	3.1599E-05	466.7633515017195	27.854	0.26387	27.854	27.746	28.01	0					12	5	3	0	0	0	0.6282	1	10059	10059		44.531	0	1	860830	+		30053	17629	20605	20677	30444	30444					0.04422088760088627
PYRFKEYLWRF	11	Unmodified	_PYRFKEYLWRF_					0	0	0			REV__ENSG00000167904|ENST00000434581|TMEM68	REV__ENSG00000167904|ENST00000434581|TMEM68	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.6162719726562	3	535.617266	1603.82997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.177	1	38.177	37.677	38.677	0								0	0	0	0.45674	1	14495	14495		6.001	0	1		+		30054	16223	20606	20678	30445	30445					0.052206765766186436
PYRFKEYLWRF	11	Unmodified	_PYRFKEYLWRF_					0	0	0			REV__ENSG00000167904|ENST00000434581|TMEM68	REV__ENSG00000167904|ENST00000434581|TMEM68	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.6170043945312	3	535.617266	1603.82997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.422	1	40.422	39.922	40.922	0								0	0	0	0.45674	1	13530	13530		9.2118	3.2108	1		+		30055	16223	20606	20678	30446	30446					0.052206765766186436
PYSITVNKF	9	Unmodified	_PYSITVNKF_					0	0	0			REV__ENST00000463418.5_1_2:158157328-158158798:+|nuORF	REV__ENST00000463418.5_1_2:158157328-158158798:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	356.8622741699219	3	356.862325	1067.56515	0.13526	4.827E-05	-0.25889	-9.2388E-05	-0.12363	-4.4118E-05	356.8621774983427	30.256	0.31697	30.256	30.132	30.449	0					34	11	4	0	0	0	0.41354	1	9611	9611		47.657	8.9037	1	1668300	+		30056	19395	20607	20679	30447	30447					0.034066271030496864
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.7725219726562	2	550.268947	1098.52334	1.5482	0.00085195	-0.48438	-0.00026654	1.0639	0.00058541	550.2684861543024	32.206	0.18325	32.206	32.122	32.305	0					21	8	3	0	0	0	0.21263	1	10384	10384		60.118	8.7828	1	132970			30057	6923	20608	20680	30448	30448					-0.021979733761327225
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2695922851562	2	550.268947	1098.52334	1.8343	0.0010094	-0.2294	-0.00012623	1.6049	0.00088314	550.2686676654205	32.466	0.33868	32.466	32.342	32.68	0					24	8	4	0	0	0	0.003936	1	11914	11914		163.15	60.378	1	1480500			30058	6923	20608	20680	30449	30449					-0.021979733761327225
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2698974609375	2	550.268947	1098.52334	0.32279	0.00017762	0.59666	0.00032833	0.91945	0.00050595	550.2694073379091	32.263	0.39384	32.263	32.161	32.555	0					27	16	3	0	0	0	0.095583	1	10742	10742		80.455	11.668	1	390810			30059	6923	20608	20680	30450	30450					-0.021979733761327225
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2701416015625	2	550.268947	1098.52334	1.692	0.00093107	-0.50746	-0.00027924	1.1846	0.00065182	550.2687220536897	32.453	0.61082	32.453	32.274	32.885	0					29	15	3	0	0	0	0.003936	1	12327	12327		163.15	80.846	1	2278400			30060	6923	20608	20680	30451	30451					-0.021979733761327225
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.77197265625	2	550.268947	1098.52334	1.1539	0.00063498	-0.016664	-9.1695E-06	1.1373	0.00062581	550.2689113605607	32.246	0.2875	32.246	32.14	32.428	0					15	8	3	0	0	0	0.078509	1	11186	11186		85.161	31.809	1	216430			30061	6923	20608	20680	30452	30452					-0.021979733761327225
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2705078125	2	550.268947	1098.52334	-1.4266	-0.000785	2.9239	0.0016089	1.4973	0.00082393	550.2704475059135	32.235	0.31548	32.235	32.188	32.504	0					12	9	2	0	0	0	0.15163	1	11213	11213		67.494	18.052	1	172770			30062	6923	20608	20680	30453	30453					-0.021979733761327225
PYVTFPRQCPP	11	Unmodified	_PYVTFPRQCPP_					0	0	0		OTUD7B|p.A728V|1|0.38|ENSG00000264522|chr1:149944206-149944206|G/A|missense_variant	OTUD7B|p.A728V|1|0.38|ENSG00000264522|chr1:149944206-149944206|G/A|missense_variant	OTUD7B|p.A728V|1|0.38|ENSG00000264522|chr1:149944206-149944206|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	652.828125	2	652.82644	1303.63833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.076	1	32.076	31.576	32.576	0								0	0	0	0.41424	1	10682	10682		33.922	10.399	1				30063	11891	20609	20681	30454	30454					-0.0013456744600262027
QAADILLYK	9	Unmodified	_QAADILLYK_					0	0	0		ENSG00000116874|ENST00000235521|WARS2;nc|ENSG00000116874|Q9UGM6-2|WARS2	ENSG00000116874|ENST00000235521|WARS2	ENSG00000116874|ENST00000235521|WARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7984008789062	2	517.797675	1033.5808	2.0628	0.0010681	-0.23024	-0.00011922	1.8325	0.00094888	517.7975412202804	37.961	0.17481	37.961	37.902	38.077	0					21	10	3	0	0	0	0.43488	1	12398	12398		39.253	19.256	1	158210			30064	3010	20610	20682	30455	30455					0.06534913620112093
QAAFRAVHNV	10	Unmodified	_QAAFRAVHNV_					0	0	0			REV__nc|ENSG00000140848|Q96FN4-2|CPNE2	REV__nc|ENSG00000140848|Q96FN4-2|CPNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.8006591796875	2	556.801614	1111.58868	-0.96466	-0.00053712	-0.73389	-0.00040863	-1.6986	-0.00094576	556.8013360841537	15.468	0.078076	15.468	15.429	15.507	0					4	2	2	0	0	0	0.58896	1	3484	3484		35.618	6.4482	1	55434	+		30065	15093	20611	20683	30456	30456					0.037344856602203436
QAAKDLVTR	9	Unmodified	_QAAKDLVTR_					0	0	0		ENST00000475665.5_1_3:49896753-49898557:-|nuORF;nc|ENSG00000164076|Q8NCB2-3|CAMKV;nc|ENSG00000164076|Q8NCB2-2|CAMKV;ENSG00000164076|ENST00000477224|CAMKV	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.79559326171875	2	501.290548	1000.56654	0.94094	0.00047168	-0.076571	-3.8384E-05	0.86437	0.0004333	501.290971610175	15.475	1.1561	15.475	15.274	16.43	0					58	23	5	0	0	0	0.070005	1	4201	4201		71.877	8.3436	1	42852000			30066	5648	20612	20684	30457	30457					0.06628261191804086
QAAMPQVSY	9	Unmodified	_QAAMPQVSY_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7365417480469	2	497.73676	993.458967	-0.025663	-1.2773E-05	-0.98745	-0.00049149	-1.0131	-0.00050426	497.73656894069813	38.164	0.38686	38.164	37.99	38.377	0					26	13	3	0	0	0	0.25716	1	14923	14923		54.776	2.4771	1	108560			30067	6631	20613	20685	30458	30458					-0.038024517339295016
QAARDALSLR	10	Unmodified	_QAARDALSLR_					0	0	0		ENST00000297908.7_1_9:125026959-125027142:+|nuORF	ENST00000297908.7_1_9:125026959-125027142:+|nuORF	ENST00000297908.7_1_9:125026959-125027142:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.814208984375	2	550.812179	1099.60981	1.5285	0.0008419	2.4999	0.001377	4.0283	0.0022188	550.8136313128557	20.992	0.12287	20.992	20.951	21.074	0					5	3	2	0	0	0	0.4287	1	5723	5723		53.089	7.137	1	69724			30068	8469	20614	20686	30459	30459					0.06398450969072655
QAASKHLKAF	10	Unmodified	_QAASKHLKAF_					0	0	0			REV__ENSG00000268629|ENST00000600991|TEX13A	REV__ENSG00000268629|ENST00000600991|TEX13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8145751953125	2	550.81419	1099.61383	1.8309	0.0010085	-1.36	-0.00074913	0.47089	0.00025938	550.8133372165498	21.317	0.39206	21.317	21.052	21.444	0					22	9	4	0	0	0	0.19797	1	6765	6765		79.713	7.8351	1	603150	+		30069	17798	20615	20687	30460	30460					0.06800540462791105
QACSAQASIDP	11	Unmodified	_QACSAQASIDP_					0	0	0			REV__ENST00000453634.5_3_22:51014735-51015826:-|nuORF	REV__ENST00000453634.5_3_22:51014735-51015826:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7450561523438	2	545.745313	1089.47607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.725	1	28.725	28.225	29.225	0								0	0	0	0.42918	1	8994	8994		30.569	6.0497	1		+		30070	19335	20616	20688	30461	30461					-0.06508575918792303
QACWDERS	8	Unmodified	_QACWDERS_					0	0	0			REV__ENST00000321617.7_1_17:73510144-73510285:-|nuORF	REV__ENST00000321617.7_1_17:73510144-73510285:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.70526123046875	2	497.705991	993.397429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.57	1	14.57	14.07	15.07	0								0	0	0	1.7419	1	3019	3019		12.207	0.69583	1		+		30071	18329	20617	20689	30462	30462					-0.09953383433207819
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2625732421875	2	540.261456	1078.50836	1.4391	0.00077748	-0.4465	-0.00024123	0.99257	0.00053625	540.261144516742	42.498	0.17611	42.498	42.431	42.607	0					15	9	2	0	0	0	0.32741	1	16679	16679		47.916	3.5384	1	111090			30072	2348	20618	20690	30463	30463					-0.027754204534630844
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2626953125	2	540.261456	1078.50836	0.66642	0.00036004	0.52596	0.00028416	1.1924	0.0006442	540.2616689037554	42.464	0.34032	42.464	42.347	42.687	0					20	9	3	0	0	0	0.23186	1	16940	16940		57.811	22.659	1	336360			30073	2348	20618	20690	30464	30464					-0.027754204534630844
QADPTKLEL	9	Unmodified	_QADPTKLEL_					0	0	0		ENSG00000164609|ENST00000297151|SLU7;ENST00000520841.1_1_5:159833399-159835410:-|nuORF;ENST00000523219.1_1_5:159833399-159834623:-|nuORF	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2763671875	2	507.776939	1013.53933	0.17782	9.029E-05	-2.8106	-0.0014272	-2.6328	-0.0013369	508.27631946013753	36.55	0.30015	36.55	36.394	36.695	0					18	8	3	0	0	0	0.13267	1	14222	14222		71.877	18.526	1	157760			30074	5708	20619	20691	30465	30465					0.033097328607595955
QAEATAQTL	9	Unmodified	_QAEATAQTL_					0	0	0		FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant;FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1;FNDC1|p.R809Q|1|0.5|ENSG00000164694|chr6:159232938-159232938|G/A|missense_variant	FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant	FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.73724365234375	2	466.737814	931.461075	-0.13368	-6.2393E-05	-1.0048	-0.00046896	-1.1384	-0.00053135	466.73737793411084	30.846	0.36452	30.846	30.601	30.965	0					12	8	2	0	0	0	0.078509	1	11557	11557		85.161	5.4482	1	216150			30075	5720	20620	20692	30466	30466					-0.0073969972447684995
QAEATAQTL	9	Unmodified	_QAEATAQTL_					0	0	0		FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant;FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1;FNDC1|p.R809Q|1|0.5|ENSG00000164694|chr6:159232938-159232938|G/A|missense_variant	FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant	FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7372131347656	2	466.737814	931.461075	-0.5025	-0.00023454	0.34633	0.00016164	-0.15618	-7.2893E-05	466.73790305953554	30.789	0.41713	30.789	30.529	30.946	0					16	8	3	0	0	0	0.13726	1	11428	11428		70.816	10.698	1	414780			30076	5720	20620	20692	30467	30467					-0.0073969972447684995
QAEEKAHAF	9	Unmodified	_QAEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7518310546875	2	515.751256	1029.48796	1.317	0.00067926	-0.64503	-0.00033268	0.67199	0.00034658	515.7509786391656	17.962	0.13043	17.962	17.88	18.01	0					9	3	4	0	0	0	0.21263	1	4383	4383		60.118	16.001	1	401960			30077	6707	20621	20693	30468	30468					-0.025605911132970505
QAEEKAHAF	9	Unmodified	_QAEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7514038085938	2	515.751256	1029.48796	-0.072188	-3.7231E-05	0.31983	0.00016495	0.24764	0.00012772	515.751446957723	17.973	0.20265	17.973	17.869	18.072	0					14	5	5	0	0	0	0.0406	1	4617	4617		98.629	50.972	1	598090			30078	6707	20621	20693	30469	30469					-0.025605911132970505
QAEEKAHAF	9	Unmodified	_QAEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7515258789062	2	515.751256	1029.48796	1.438	0.00074164	-1.0357	-0.00053414	0.40232	0.0002075	515.7508234769379	18.247	0.37312	18.247	17.988	18.361	0					12	7	4	0	0	0	0.012915	1	5560	5560		134.81	71.504	1	2179000			30079	6707	20621	20693	30470	30470					-0.025605911132970505
QAEEKAHAF	9	Unmodified	_QAEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7510986328125	2	515.751256	1029.48796	0.74305	0.00038323	-0.90847	-0.00046854	-0.16542	-8.5314E-05	515.7508850088092	18.059	0.16301	18.059	17.955	18.118	0					7	3	3	0	0	0	0.15163	1	4647	4647		67.494	3.2864	1	418820			30080	6707	20621	20693	30471	30471					-0.025605911132970505
QAEEKAHAF	9	Unmodified	_QAEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7515258789062	2	515.751256	1029.48796	-1.5402	-0.00079434	2.3053	0.001189	0.76515	0.00039463	515.7525197357063	18.042	0.11507	18.042	17.986	18.101	0					4	2	2	0	0	0	0.42902	1	4641	4641		39.253	0.44669	1	453060			30081	6707	20621	20693	30472	30472					-0.025605911132970505
QAEEKAHAF	9	Unmodified	_QAEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7509155273438	2	515.751256	1029.48796	1.5122	0.00077994	-2.4845	-0.0012814	-0.97224	-0.00050143	515.7501014471071	18.215	0.26095	18.215	18.01	18.271	0					10	5	3	0	0	0	0.016683	1	5421	5421		127.46	45.221	1	2345000			30082	6707	20621	20693	30473	30473					-0.025605911132970505
QAEIPATI	8	Unmodified	_QAEIPATI_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.73516845703125	2	421.734543	841.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.848	1	45.848	45.348	46.348	0								0	0	0	1.7419	1	14721	14721		12.959	0.75233	1		+		30083	12820	20622	20694	30474	30474					0.027464071148074254
QAEITVSER	9	Unmodified	_QAEITVSER_					0	0	0			REV__ENSG00000115825|ENST00000234179|PRKD3	REV__ENSG00000115825|ENST00000234179|PRKD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.766357421875	2	516.769645	1031.52474	0.03984	2.0588E-05	-4.4096	-0.0022787	-4.3698	-0.0022582	516.7673285311307	32.579	0.17104	32.579	32.454	32.625	0					6	4	2	0	0	0	0.19605	1	11965	11965		62.107	5.3864	1	642500	+		30084	14126	20623	20695	30475	30475					0.010236607126216768
QAELTGLRL	9	Unmodified	_QAELTGLRL_					0	0	0		nc|ENSG00000247077|Q96HS1-2|PGAM5;ENSG00000247077|ENST00000498926|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	nc|ENSG00000247077|Q96HS1-2|PGAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7936096191406	2	500.792924	999.571294	0.019311	9.6706E-06	-0.50797	-0.00025439	-0.48866	-0.00024472	500.7927230588152	25.893	0.3977	25.893	25.603	26	0					9	6	2	0	0	0	0.38666	1	9151	9151		42.864	2.8061	1	380920			30085	7972	20624	20696	30476	30476					0.07149145334562945
QAEMNSLLK	9	Unmodified	_QAEMNSLLK_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.27001953125	2	517.270967	1032.52738	1.5116	0.00078192	-4.4255	-0.0022892	-2.9139	-0.0015073	517.267961509754	38.39	0.29263	38.39	38.248	38.541	0					14	10	2	0	0	0	0.47038	1	15065	15065		35.618	1.4457	1	133960	+		30086	15239	20625	20697	30477	30477					0.01241792845917189
QAEPGWSPQ	9	Unmodified	_QAEPGWSPQ_					0	0	0			REV__KRBA1|p.I622Sfs*4|1|0.09|ENSG00000133619|chr7:149730195-149730195|G/-|frameshift_variant	REV__KRBA1|p.I622Sfs*4|1|0.09|ENSG00000133619|chr7:149730195-149730195|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.73785400390625	2	500.230156	998.445759	1.09	0.00054525	-2.7266	-0.0013639	-1.6366	-0.00081867	500.22821924654454	22.634	0.91441	22.634	22.421	23.335	0					59	18	4	0	0	0	0.24334	1	7787	7787		56.434	21.233	1	7081800	+		30087	14713	20626	20698	30478	30478					-0.053525665216625384
QAERCVRLS	9	Unmodified	_QAERCVRLS_					0	0	0			REV__ENST00000474396.1_1_7:1094922-1095114:+|nuORF	REV__ENST00000474396.1_1_7:1094922-1095114:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2789306640625	2	531.279657	1060.54476	-0.16688	-8.8661E-05	-0.81076	-0.00043074	-0.97764	-0.0005194	531.2791972711204	16.244	0.18413	16.244	16.189	16.373	0					13	7	3	0	0	0	0.17854	1	3851	3851		64.207	64.207	1	369970	+		30088	19516	20627	20699	30479	30479					0.016911331715846245
QAERLEQI	8	Unmodified	_QAERLEQI_					0	0	0			REV__nc|ENSG00000204713|P14373-2|TRIM27	REV__nc|ENSG00000204713|P14373-2|TRIM27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7666015625	2	493.766906	985.519259	-0.083796	-4.1376E-05	-0.84517	-0.00041732	-0.92896	-0.00045869	493.76673021064414	26.583	0.11619	26.583	26.483	26.599	0					10	4	3	0	0	0	0.23898	1	8085	8085		116.9	8.8161	1	72189	+		30089	17499	20628	20700	30480	30480					0.025919819208070294
QAESHLYMK	9	Oxidation (M)	_QAESHLYM(Oxidation (M))K_		QAESHLYM(1)K		QAESHLYM(43)K	0	0	1		CALCRL|p.N329H|1|0.41|ENSG00000064989|chr2:187352257-187352257|T/G|missense_variant	CALCRL|p.N329H|1|0.41|ENSG00000064989|chr2:187352257-187352257|T/G|missense_variant	CALCRL|p.N329H|1|0.41|ENSG00000064989|chr2:187352257-187352257|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.7675170898438	2	561.766049	1121.51754	1.2735	0.00071539	1.5927	0.0008947	2.8661	0.0016101	561.7673119902943	23.782	0.69356	23.782	23.615	24.309	0					63	23	4	0	0	0	0.38666	1	6896	6896		42.864	10.052	1	915900			30090	359	20629	20701	30481	30481		18			-0.03835395159489963
QAESRAVVY	9	Unmodified	_QAESRAVVY_					0	0	0		TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant;ENSG00000160218|ENST00000291574|TRAPPC10	TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7671203613281	2	511.766906	1021.51926	1.3105	0.00067068	-1.0456	-0.00053511	0.26491	0.00013557	511.76647061251214	24.429	0.15335	24.429	24.324	24.478	0					5	3	2	0	0	0	0.35045	1	8234	8234		45.952	5.3793	1	103190			30091	5350	20630	20702	30482	30482					0.009359819208043518
QAEVLDGYLG	10	Unmodified	_QAEVLDGYLG_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.769775390625	2	532.766571	1063.51859	3.4033	0.0018132	1.415	0.00075387	4.8183	0.002567	532.7676090365742	12.374	0.40946	12.374	12.203	12.612	0					22	12	2	0	0	0	0.66185	1	2600	2600		26.693	1.1189	1	307000			30092	1543	20631	20703	30483	30483					-0.010628575189002731
QAFAAVERY	9	Unmodified	_QAFAAVERY_					0	0	0			REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7708129882812	2	527.769448	1053.52434	0.10628	5.6091E-05	2.5559	0.0013489	2.6622	0.001405	527.7709874493229	19.859	0.22719	19.859	19.693	19.92	0					14	5	5	0	0	0	0.41113	1	6080	6080		40.778	1.972	1	738430	+		30093	15501	20632	20704	30484	30484					-0.00027714216571439465
QAFAGPPLADI	11	Unmodified	_QAFAGPPLADI_					0	0	0			REV__LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant	REV__LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2926635742188	2	550.292756	1098.57096	0.31929	0.0001757	0.42239	0.00023244	0.74168	0.00040814	550.2928283183699	31.429	0.72792	31.429	31.324	32.052	0					81	28	5	0	0	0	0.49805	1	10536	10536		44.377	5.1244	1	6610200	+		30094	16525	20633	20705	30485	30485					0.02561725614691568
QAFALVSYIS	10	Unmodified	_QAFALVSYIS_					0	0	0		ENST00000608012.1_1_7:5468569-5468947:+|nuORF	ENST00000608012.1_1_7:5468569-5468947:+|nuORF	ENST00000608012.1_1_7:5468569-5468947:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.792724609375	2	549.795132	1097.57571	-1.4538	-0.00079928	-4.2986	-0.0023633	-5.7524	-0.0031626	549.7936638087069	20.688	0.1512	20.688	20.629	20.78	0					8	3	3	0	0	0	0.22691	1	5875	5875		64.207	16.55	1	175830			30095	11096	20634	20706	30486	30486					0.030826097574845335
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.781005859375	2	526.779816	1051.54508	1.3069	0.00068846	-0.14259	-7.5113E-05	1.1643	0.00061335	526.7798276566255	34.634	0.27871	34.634	34.544	34.823	0					26	12	3	0	0	0	0.1115	1	11320	11320		76.774	37.968	1	360460			30096	331	20635	20707	30487	30487					0.021368761630810695
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7801513671875	2	526.779816	1051.54508	0.38684	0.00020378	0.52817	0.00027823	0.91501	0.00048201	526.7801359567047	34.727	0.2428	34.727	34.635	34.878	0					32	11	4	0	0	0	0.055856	1	11716	11716		93.195	38.419	1	709440			30097	331	20635	20707	30488	30488					0.021368761630810695
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7799682617188	2	526.779816	1051.54508	1.7613	0.00092781	-1.0642	-0.0005606	0.69709	0.00036721	526.7793104364619	34.931	0.9644	34.931	34.794	35.759	0					36	16	4	0	0	0	0.0033161	1	13489	13489		166.78	94.905	1	4085000			30098	331	20635	20707	30489	30489					0.021368761630810695
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7805786132812	2	526.779816	1051.54508	1.2178	0.00064151	0.00051999	2.7392E-07	1.2183	0.00064179	526.7798694583427	34.69	0.46731	34.69	34.568	35.035	0					27	15	3	0	0	0	0.0792	1	12293	12293		84.916	33.58	1	495600			30099	331	20635	20707	30490	30490					0.021368761630810695
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7804565429688	2	526.779816	1051.54508	1.628	0.00085761	-0.35671	-0.00018791	1.2713	0.00066971	526.7797691142903	34.872	0.86321	34.872	34.62	35.484	0					32	17	3	0	0	0	0.0011148	1	13396	13396		181.81	96.446	1	4664900			30100	331	20635	20707	30491	30491					0.021368761630810695
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7802124023438	2	526.779816	1051.54508	3.4662	0.0018259	-2.2722	-0.0011969	1.1941	0.000629	526.7786956234232	34.855	0.61416	34.855	34.75	35.364	0					21	12	3	0	0	0	0.0090225	1	13411	13411		143.11	57.747	1	3769800			30101	331	20635	20707	30492	30492					0.021368761630810695
QAFESSQKY	9	Unmodified	_QAFESSQKY_					0	0	0		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2568969726562	2	544.256371	1086.49819	1.8076	0.00098382	-1.0612	-0.00057754	0.74649	0.00040628	544.2557057175019	24.312	0.12729	24.312	24.249	24.376	0					8	4	2	0	0	0	0.07136	1	7154	7154		87.696	25.589	1	152890			30102	1829	20636	20708	30493	30493					-0.04160028178716857
QAFESSQKY	9	Unmodified	_QAFESSQKY_					0	0	0		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2566528320312	2	544.256371	1086.49819	1.8743	0.0010201	-0.31652	-0.00017227	1.5578	0.00084784	544.2563520771496	24.572	0.34853	24.572	24.45	24.798	0					15	8	3	0	0	0	0.020674	1	8285	8285		120.87	9.2201	1	558990			30103	1829	20636	20708	30494	30494					-0.04160028178716857
QAFESSQKY	9	Unmodified	_QAFESSQKY_					0	0	0		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2572021484375	2	544.256371	1086.49819	0.44142	0.00024025	1.4815	0.0008063	1.9229	0.0010465	544.2574573335571	24.32	0.19323	24.32	24.249	24.442	0					12	6	3	0	0	0	0.21263	1	7433	7433		60.118	2.307	1	177850			30104	1829	20636	20708	30495	30495					-0.04160028178716857
QAFESSQKY	9	Unmodified	_QAFESSQKY_					0	0	0		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2569580078125	2	544.256371	1086.49819	1.9725	0.0010735	-0.056182	-3.0578E-05	1.9163	0.0010429	544.2565858962859	24.563	0.26489	24.563	24.447	24.712	0					12	5	3	0	0	0	0.048471	1	8620	8620		95.815	32.509	1	604460			30105	1829	20636	20708	30496	30496					-0.04160028178716857
QAFESSQKY	9	Unmodified	_QAFESSQKY_					0	0	0		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2571411132812	2	544.256371	1086.49819	1.0942	0.0005955	0.11657	6.3444E-05	1.2107	0.00065895	544.2562823222288	24.378	0.17837	24.378	24.301	24.48	0					8	4	3	0	0	0	0.056004	1	7590	7590		93.143	29.837	1	92370			30106	1829	20636	20708	30497	30497					-0.04160028178716857
QAFGEKITM	9	Unmodified	_QAFGEKITM_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.76025390625	2	512.760235	1023.50592	1.0783	0.00055291	-1.1447	-0.00058696	-0.066392	-3.4043E-05	512.7597034604638	35.464	0.33915	35.464	35.383	35.722	0					13	9	3	0	0	0	0.076532	1	13307	13307		85.862	36.42	1	404590			30107	4177	20637	20709	30498	30498					-0.0048959218280515415
QAFGEKITM	9	Unmodified	_QAFGEKITM_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7611694335938	2	512.760235	1023.50592	0.53414	0.00027388	0.91848	0.00047096	1.4526	0.00074485	512.7608754858285	35.462	0.125	35.462	35.393	35.518	0					5	3	2	0	0	0	0.27123	1	13755	13755		53.089	10.693	1	92576			30108	4177	20637	20709	30499	30499					-0.0048959218280515415
QAFGEKITM	9	Unmodified	_QAFGEKITM_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.76025390625	2	512.760235	1023.50592	0.48313	0.00024773	0.66734	0.00034219	1.1505	0.00058992	512.7606393247307	35.242	0.17863	35.242	35.153	35.332	0					9	6	2	0	0	0	0.33044	1	12543	12543		47.657	5.2612	1	56662			30109	4177	20637	20709	30500	30500					-0.0048959218280515415
QAFGEKITM	9	Unmodified	_QAFGEKITM_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.76025390625	2	512.760235	1023.50592	0.073	3.7431E-05	-0.21151	-0.00010845	-0.13851	-7.1023E-05	512.7602914156245	35.39	0.32351	35.39	35.279	35.603	0					15	6	4	0	0	0	0.063171	1	13668	13668		90.601	39.265	1	562670			30110	4177	20637	20709	30501	30501					-0.0048959218280515415
QAFGEKITM	9	Unmodified	_QAFGEKITM_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7603759765625	2	512.760235	1023.50592	1.4365	0.0007366	-1.5719	-0.000806	-0.13534	-6.9399E-05	512.7595265357244	35.424	0.32357	35.424	35.262	35.586	0					17	6	4	0	0	0	0.16806	1	13686	13686		65.465	15.441	1	663170			30111	4177	20637	20709	30502	30502					-0.0048959218280515415
QAFGGRRGQ	9	Unmodified	_QAFGGRRGQ_					0	0	0		ENST00000233630.10_1_2:74735069-74735567:-|nuORF	ENST00000233630.10_1_2:74735069-74735567:-|nuORF	ENST00000233630.10_1_2:74735069-74735567:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.75634765625	2	488.757207	975.499861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.514	1	13.514	13.014	14.014	0								0	0	0	0.2591	1	3154	3154		42.396	1.8235	1				30112	8205	20638	20710	30503	30503					0.011130704205697839
QAFGSGNNSY	10	Unmodified	_QAFGSGNNSY_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7235107421875	2	522.722695	1043.43084	1.5256	0.00079746	-0.81569	-0.00042638	0.70991	0.00037108	522.7222283501948	30.262	0.16959	30.262	30.193	30.362	0					8	5	2	0	0	0	0.4287	1	9620	9620		53.089	10.693	1	72738			30113	3204	20639	20711	30504	30504					-0.0891405838965511
QAFGSGNNSY	10	Unmodified	_QAFGSGNNSY_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7228393554688	2	522.722695	1043.43084	1.6533	0.00086423	-1.1572	-0.00060488	0.49615	0.00025935	522.7221108704805	30.528	0.26878	30.528	30.445	30.714	0					13	6	3	0	0	0	0.034064	1	11026	11026		115.23	115.23	1	623830			30114	3204	20639	20711	30505	30505					-0.0891405838965511
QAFGSGNNSY	10	Unmodified	_QAFGSGNNSY_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7227172851562	2	522.722695	1043.43084	1.5099	0.00078928	-1.0581	-0.00055309	0.45185	0.00023619	522.7224108075761	30.31	0.22806	30.31	30.229	30.457	0					6	5	2	0	0	0	0.28675	1	10317	10317		68.846	22.894	1	53167			30115	3204	20639	20711	30506	30506					-0.0891405838965511
QAFGSGNNSY	10	Unmodified	_QAFGSGNNSY_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7227783203125	2	522.722695	1043.43084	1.625	0.00084942	-1.3229	-0.0006915	0.30211	0.00015792	522.7221014450839	30.485	0.40392	30.485	30.376	30.78	0					18	8	3	0	0	0	0.099683	1	11302	11302		95.483	34.511	1	821390			30116	3204	20639	20711	30507	30507					-0.0891405838965511
QAFGVSAPKLA	11	Unmodified	_QAFGVSAPKLA_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.541259765625	3	363.541475	1087.60259	-0.092021	-3.3454E-05	-0.32887	-0.00011956	-0.42089	-0.00015301	363.541400597648	23.344	1.0607	23.344	23.235	24.295	0					58	21	6	0	0	0	0.60833	1	8059	8059		36.318	10.744	1	17642000			30117	8075	20640	20712	30508	30508					0.062297183686723656
QAFLARLKG	9	Unmodified	_QAFLARLKG_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.18524169921875	3	335.206426	1002.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.699	1	14.699	14.199	15.199	0								0	0	0	0.35377	1	3071	3071		24.519	0.31644	1				30118	5387	20641	20713	30509	30509					0.09625459296705685
QAFLHAQSF	9	Unmodified	_QAFLHAQSF_					0	0	0		ENST00000497273.1_1_19:48801255-48801556:-|nuORF;nc|ENSG00000105479|Q96M63-4|ODAD1;nc|ENSG00000105479|Q96M63-5|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1	ENST00000497273.1_1_19:48801255-48801556:-|nuORF	ENST00000497273.1_1_19:48801255-48801556:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7640380859375	2	524.764166	1047.51378	0.53918	0.00028294	-2.3716	-0.0012445	-1.8324	-0.00096156	524.7627688456195	12.197	0.12655	12.197	12.105	12.232	0					8	3	3	0	0	0	0.17854	1	2533	2533		64.207	0.67341	1	171060			30119	2361	20642	20714	30510	30510					-0.008076968710156507
QAFLLPPVF	9	Unmodified	_QAFLLPPVF_					0	0	0		nc|ENSG00000142166|P17181-2|IFNAR1;nc|ENSG00000142166|P17181-4|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.302001953125	2	516.299853	1030.58515	1.462	0.00075483	3.9682	0.0020488	5.4302	0.0028036	516.3020740020572	11.645	0.24067	11.645	11.465	11.706	0					10	6	2	0	0	0	0.55379	1	2417	2417		19.36	12.167	1	75195			30120	4484	20643	20715	30511	30511					0.07108422833653094
QAGALLHVY	9	Unmodified	_QAGALLHVY_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.26934814453125	2	486.269084	970.523616	-0.087479	-4.2538E-05	0.0099078	4.8178E-06	-0.077571	-3.772E-05	486.2691060637999	37.457	0.14525	37.457	37.365	37.51	0					7	4	2	0	0	0	0.038924	1	14652	14652		100.27	44.768	1	75722			30121	5246	20644	20716	30512	30512					0.037174911343640815
QAGEQVKRL	9	Unmodified	_QAGEQVKRL_					0	0	0			REV__ENSG00000116525|ENST00000291416|TRIM62	REV__ENSG00000116525|ENST00000291416|TRIM62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.7987060546875	2	514.795998	1027.57744	4.4522	0.002292	0.16113	8.2949E-05	4.6133	0.0023749	514.7960342708867	19.036	0.28916	19.036	18.943	19.232	0					17	9	3	0	0	0	0.047412	1	5079	5079		96.19	11.03	1	591890	+		30122	14145	20645	20717	30513	30513					0.06475663566084222
QAGKSVGVVT	10	Unmodified	_QAGKSVGVVT_					0	0	0		ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2733459472656	2	473.271824	944.529095	0.24983	0.00011824	2.818	0.0013337	3.0678	0.0014519	473.27330587760974	18.686	0.38787	18.686	18.385	18.773	0					15	9	3	0	0	0	0.47859	1	5524	5524		47.657	3.5405	1	351550			30123	5542	20646	20718	30514	30514					0.05461169926195453
QAGLCVALLL	10	Carbamidomethyl (C)	_QAGLC(Carbamidomethyl (C))VALLL_	QAGLC(1)VALLL		QAGLC(63)VALLL		0	1	0			REV__CHRNG|p.C252Vfs*58|1|0.29|ENSG00000196811|chr2:232543026-232543026|C/-|frameshift_variant	REV__CHRNG|p.C252Vfs*58|1|0.29|ENSG00000196811|chr2:232543026-232543026|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3080444335938	2	529.307352	1056.60015	2.2942	0.0012144	-1.5876	-0.00084034	0.70662	0.00037402	529.306707488969	34.417	0.28812	34.417	34.257	34.545	0					15	7	3	0	0	0	0.33577	1	12813	12813		63.306	13.282	1	152370	+		30124	12496	20647	20719	30515	30515	492				0.074115466393323
QAGLSNLAPR	10	Unmodified	_QAGLSNLAPR_					0	0	0		ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.29248046875	2	513.788173	1025.56179	1.4679	0.00075416	1.4564	0.00074828	2.9243	0.0015024	514.2906662777426	14.353	0.36939	14.353	14.188	14.558	0					14	7	3	0	0	0	0.53919	1	3586	3586		29.17	3.7199	1	369800			30125	3996	20648	20720	30516	30516					0.05003377049024493
QAGRSTILV	9	Unmodified	_QAGRSTILV_					0	0	0			REV__ENSG00000172878|ENST00000315796|METAP1D;REV__ENST00000488581.5_1_2:172944999-172945131:+|nuORF	REV__ENSG00000172878|ENST00000315796|METAP1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2732849121094	2	472.779816	943.545079	-0.57479	-0.00027175	0.2416	0.00011422	-0.33318	-0.00015752	472.78000034205627	18.727	0.49112	18.727	18.621	19.112	0					18	10	4	0	0	0	0.45358	1	5626	5626		37.159	1.5408	1	3995300	+		30126	16479;19694	20649	20721	30517	30517					0.07104876163100471
QAGTALRVAS	10	Unmodified	_QAGTALRVAS_					0	0	0			REV__COL9A3|p.P243Lfs*290|1|0.43|ENSG00000092758|chr20:62826243-62826243|C/-|frameshift_variant	REV__COL9A3|p.P243Lfs*290|1|0.43|ENSG00000092758|chr20:62826243-62826243|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2742004394531	2	487.274898	972.535243	1.2512	0.0006097	-1.129	-0.00055012	0.12226	5.9575E-05	487.2743336447555	16.335	0.099541	16.335	16.277	16.376	0					8	4	2	0	0	0	0.26198	1	3693	3693		71.877	0.58177	1	149070	+		30127	12568	20650	20722	30518	30518					0.04787688157705361
QAGVWAQI	8	Unmodified	_QAGVWAQI_					0	0	0			REV__ENSG00000182318|ENST00000329665|ZSCAN22	REV__ENSG00000182318|ENST00000329665|ZSCAN22	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.7364196777344	2	436.734877	871.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.415	1	20.415	19.915	20.915	0								0	0	0	1.7419	1	6480	6480		42.474	1.9018	1		+		30128	16877	20651	20723	30519	30519					0.014332465545066952
QAHEADLE	8	Unmodified	_QAHEADLE_					0	0	0			REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7062072753906	2	456.706514	911.398475	-0.61203	-0.00027952	-0.097394	-4.4481E-05	-0.70943	-0.000324	456.7063781788274	20.967	0.25452	20.967	20.88	21.135	0					13	6	3	0	0	0	0.7126	1	6596	6596		31.955	1.4512	1	417750	+		30129	13012	20652	20724	30520	30520					-0.06076845792665608
QAHLKVDVY	9	Unmodified	_QAHLKVDVY_					0	0	0		ENSG00000156413|ENST00000318336|FUT6;ENSG00000171124|ENST00000303225|FUT3;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5	ENSG00000156413|ENST00000318336|FUT6	ENSG00000156413|ENST00000318336|FUT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7930297851562	2	536.792924	1071.57129	1.9447	0.0010439	-1.0399	-0.00055823	0.90473	0.00048565	536.7924999337214	28.076	0.51767	28.076	27.943	28.46	0					14	10	2	0	0	0	0.17854	1	10106	10106		64.207	18.235	1	666640			30130	3639	20653	20725	30521	30521					0.03837145334568959
QAHLVLLAQ	9	Unmodified	_QAHLVLLAQ_					0	0	0			REV__PAK4|p.S429L|1|0.38|ENSG00000130669|chr19:39175365-39175365|C/T|missense_variant	REV__PAK4|p.S429L|1|0.38|ENSG00000130669|chr19:39175365-39175365|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7979736328125	2	496.798009	991.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.241	1	29.241	28.741	29.741	0								0	0	0	0.05454	1	10806	10806		84.916	30.139	1		+		30131	21334	20654	20726	30522	30522					0.08533753059805349
QAHSVLKKT	9	Unmodified	_QAHSVLKKT_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3;PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant;PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.3009338378906	2	506.300916	1010.58728	0.14185	7.1821E-05	-0.12596	-6.3774E-05	0.015892	8.0462E-06	506.3008778416407	14.951	0.11752	14.951	14.893	15.011	0					6	2	3	0	0	0	0.047855	1	4000	4000		113.41	11.811	1	949740			30132	3076	20655	20727	30523	30523					0.08240851571463281
QAICIFFERK	10	Unmodified	_QAICIFFERK_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	627.8372192382812	2	627.836808	1253.65906	1.272	0.0007986	0.77799	0.00048845	2.05	0.0012871	627.8371311681922	33.451	0.67127	33.451	33.327	33.998	0					29	17	4	0	0	0	0.56931	1	12560	12560		37.812	1.3648	1	787770	+		30133	15198	20656	20728	30524	30524					0.04238022933668617
QAIGYDAIKA	10	Unmodified	_QAIGYDAIKA_					0	0	0			REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.283447265625	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.954	1	19.954	19.454	20.454	0								0	0	0	0.35404	1	5521	5521		37.812	0	1		+		30134	17202	20657	20729	30525	30525					0.032974390976505674
QAIIDVLTKR	10	Unmodified	_QAIIDVLTKR_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000265190|ENST00000585281|ANXA8;ENSG00000264230|ENST00000619162|ANXA8L1	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.23663330078125	3	386.239796	1155.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.566	1	31.566	31.066	32.066	0								0	0	0	0.38825	1	10153	10153		34.087	2.0524	1				30135	8063	20658	20730	30526	30526					0.12593651839847553
QAIKESKIEL	10	Unmodified	_QAIKESKIEL_					0	0	0		tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1	tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1	tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.8402709960938	2	579.840071	1157.66559	-0.09123	-5.2899E-05	0.38823	0.00022511	0.297	0.00017221	579.8401203654223	20.899	0.11102	20.899	20.862	20.973	0					7	3	3	0	0	0	0.58189	1	5940	5940		36.447	1.2947	1	95235			30136	22604	20659	20731	30527	30527					0.09306239366037516
QAIKIISII	9	Unmodified	_QAIKIISII_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.8343811035156	2	499.83406	997.653567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.669	1	34.669	34.169	35.169	0								0	0	0	0.27025	1	11702	11702		40.778	0	1				30137	7354;23071	20660	20732	30528	30528					0.15464667413527877
QAIKNGQAL	9	Unmodified	_QAIKNGQAL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.77203369140625	2	471.771991	941.529429	0.58851	0.00027764	-0.95929	-0.00045257	-0.37078	-0.00017493	471.7715489152371	21.316	0.16565	21.316	21.208	21.374	0					5	3	2	0	0	0	0.13519	1	7064	7064		71.296	16.519	1	1068300			30138	11514;11513	20661	20733	30529	30529					0.05632589646052111
QAILPQQPL	9	Unmodified	_QAILPQQPL_					0	0	0			REV__nc|nan|P58505-3|C21orf58	REV__nc|nan|P58505-3|C21orf58	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.641	1	35.641	35.141	36.141	0								0	0	0	0.35507	1	13776	13776		18.262	2.929	1		+		30139	15747	20662	20734	30530	30530					0.07810333339955378
QAIVDEALVL	10	Unmodified	_QAIVDEALVL_					0	0	0		CABIN1|p.G242V|1|0.1|ENSG00000099991|chr22:24050893-24050893|G/T|missense_variant	CABIN1|p.G242V|1|0.1|ENSG00000099991|chr22:24050893-24050893|G/T|missense_variant	CABIN1|p.G242V|1|0.1|ENSG00000099991|chr22:24050893-24050893|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.3119506835938	2	535.808239	1069.60193	1.2725	0.00068182	1.1688	0.00062628	2.4414	0.0013081	536.3099757438072	24.945	0.14073	24.945	24.858	24.999	0					7	4	2	0	0	0	0.50287	1	7443	7443		32.812	0	1	28966			30140	341	20663	20735	30531	30531					0.06990878928945676
QAIVKNTLKG	10	Unmodified	_QAIVKNTLKG_					0	0	0			REV__tr|U7SJ44|U7SJ44_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02085PE=4SV=1	REV__tr|U7SJ44|U7SJ44_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02085PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3299560546875	2	536.329673	1070.64479	1.9288	0.0010345	-1.2919	-0.00069286	0.63691	0.00034159	536.329140573895	26.093	0.26669	26.093	25.983	26.25	0					12	5	3	0	0	0	0.43008	1	9190	9190		52.937	3.4007	1	526800	+		30141	21726	20664	20736	30532	30532					0.1122969377706795
QAIVLNIL	8	Unmodified	_QAIVLNIL_					0	0	0			REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2845153808594	2	442.284203	882.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.706	1	37.706	37.206	38.206	0								0	0	0	1.7419	1	13490	13490		31.955	5.1588	1		+		30142	14112	20665	20737	30533	30533					0.10787849799555715
QAIVPNKLE	9	Unmodified	_QAIVPNKLE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2953796386719	2	506.295299	1010.57605	-0.37563	-0.00019018	0.18961	9.6E-05	-0.18601	-9.4177E-05	506.2953995816859	30.621	0.61013	30.621	30.205	30.815	0					30	13	3	0	0	0	0.35021	1	11499	11499		45.972	6.7194	1	299400	+		30143	15602;22247	20666	20738	30534	30534					0.07118029477328491
QAKAPLPLGRS	11	Unmodified	_QAKAPLPLGRS_					0	0	0		ENST00000259351.9_1_9:129677065-129724587:+|nuORF	ENST00000259351.9_1_9:129677065-129724587:+|nuORF	ENST00000259351.9_1_9:129677065-129724587:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.3408813476562	2	569.340572	1136.66659	0.084002	4.7826E-05	0.24173	0.00013763	0.32573	0.00018545	569.3408349850496	19.963	0.25858	19.963	19.852	20.11	0					10	5	3	0	0	0	0.45905	1	6125	6125		23.523	0	1	751400			30144	8283	20667	20739	30535	30535					0.10372498525612173
QAKEKVKKK	9	Unmodified	_QAKEKVKKK_					0	0	0		ENSG00000179083|ENST00000683942|FAM133A	ENSG00000179083|ENST00000683942|FAM133A	ENSG00000179083|ENST00000683942|FAM133A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8544311523438	2	543.853316	1085.69208	0.38478	0.00020927	2.0721	0.0011269	2.4569	0.0013362	543.8541722075389	15.73	0.072527	15.73	15.69	15.762	0					4	2	2	0	0	0	0.076532	1	3644	3644		60.118	0	1	90391			30145	6753	20668	20740	30536	30536					0.152659730480309
QAKHTAKSI	9	Unmodified	_QAKHTAKSI_					0	0	0		ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4	ENST00000482171.5_1_2:130910130-130912221:-|nuORF	ENST00000482171.5_1_2:130910130-130912221:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2851257324219	2	492.285266	982.555979	-0.67259	-0.00033111	0.7015	0.00034534	0.028904	1.4229E-05	492.28549955494464	53.61	0.19783	53.61	53.518	53.716	0					18	12	2	0	0	0	0.61124	1	19567	19567		16.473	0.83134	1	112110			30146	4099	20669	20741	30537	30537					0.06400278537375925
QAKKVIAQL	9	Unmodified	_QAKKVIAQL_					0	0	0			REV__SCAPER|p.K784Nfs*2|1|0.32|ENSG00000140386|chr15:76702901-76702901|G/-|frameshift_variant	REV__SCAPER|p.K784Nfs*2|1|0.32|ENSG00000140386|chr15:76702901-76702901|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.8214416503906	2	499.821484	997.628415	-0.18431	-9.2123E-05	-0.20988	-0.0001049	-0.39419	-0.00019703	499.8214792034518	32.299	0.21412	32.299	32.167	32.381	0					9	5	2	0	0	0	0.47038	1	11833	11833		35.618	1.6967	1	279670	+		30147	15072	20670	20742	30538	30538					0.12950612610927692
QAKLKELQA	9	Unmodified	_QAKLKELQA_					0	0	0		ENSG00000069424|ENST00000378083|KCNAB2;nc|ENSG00000069424|Q13303-4|KCNAB2;nc|ENSG00000069424|Q13303-2|KCNAB2;nc|ENSG00000069424|Q13303|KCNAB2;nc|ENSG00000069424|Q13303-5|KCNAB2	ENSG00000069424|ENST00000378083|KCNAB2	ENSG00000069424|ENST00000378083|KCNAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.8074951171875	2	514.808574	1027.60259	-0.49131	-0.00025293	-1.1521	-0.0005931	-1.6434	-0.00084603	514.808150471024	18.685	0.21754	18.685	18.527	18.745	0					6	4	2	0	0	0	0.28504	1	5790	5790		52.937	0	1	179090			30148	1435	20671	20743	30539	30539					0.0898971836866167
QAKMMTNLVM	10	Oxidation (M)	_QAKM(Oxidation (M))MTNLVM_		QAKM(0.774)M(0.226)TNLVM		QAKM(5.3)M(-5.3)TNLVM(-33)	0	0	1		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.7890625	2	591.787612	1181.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.131	1	20.131	19.631	20.631	0								0	0	0	0.23331	1	6477	6477		60.118	7.0293	3				30149	1105	20672	20744	30540	30540		51			-0.0228466469804971
QAKNGRCQVL	10	Unmodified	_QAKNGRCQVL_					0	0	0		FST|p.Y214Lfs*23|1|0.04|ENSG00000134363|chr5:53484210-53484211|-/A|frameshift_variant;FST|p.K255Nfs*43|1|0.06|ENSG00000134363|chr5:53485035-53485035|A/-|frameshift_variant;nc|ENSG00000134363|P19883-2|FST;ENSG00000134363|ENST00000256759|FST	FST|p.Y214Lfs*23|1|0.04|ENSG00000134363|chr5:53484210-53484211|-/A|frameshift_variant	FST|p.Y214Lfs*23|1|0.04|ENSG00000134363|chr5:53484210-53484211|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.798828125	2	558.800757	1115.58696	0.12122	6.7736E-05	-4.0042	-0.0022376	-3.883	-0.0021698	558.7985149574992	26.578	0.11728	26.578	26.519	26.636	0					6	4	2	0	0	0	0.51121	1	8382	8382		44.117	1.2525	1	73314			30150	3916	20673	20745	30541	30541					0.033791085799748544
QAKPTPPLRT	10	Unmodified	_QAKPTPPLRT_					0	0	0			REV__ENSG00000006210|ENST00000006053|CX3CL1	REV__ENSG00000006210|ENST00000006053|CX3CL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.8284912109375	2	554.827298	1107.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.567	1	21.567	21.067	22.067	0								0	0	0	0.4201	1	6212	6212		23.523	2.5758	1		+		30151	12849	20674	20746	30542	30542					0.09052809634295045
QAKQESTEY	9	Unmodified	_QAKQESTEY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;VIM|p.R310C|1|0.13|ENSG00000026025|chr10:17234738-17234738|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2523803710938	2	542.251286	1082.48802	1.7841	0.00096741	0.069077	3.7457E-05	1.8531	0.0010049	542.2511274759507	17.175	0.10499	17.175	17.109	17.214	0					5	3	2	0	0	0	0.21419	1	4056	4056		52.937	0	1	33165			30152	1132	20675	20747	30543	30543					-0.04992635903954579
QAKQESTEY	9	Unmodified	_QAKQESTEY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;VIM|p.R310C|1|0.13|ENSG00000026025|chr10:17234738-17234738|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2516479492188	2	542.251286	1082.48802	1.8877	0.0010236	-1.155	-0.00062629	0.73274	0.00039733	542.2506629209931	17.502	0.20888	17.502	17.421	17.63	0					12	5	3	0	0	0	0.076532	1	4962	4962		69.628	0	1	673630			30153	1132	20675	20747	30544	30544					-0.04992635903954579
QAKQESTEY	9	Unmodified	_QAKQESTEY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;VIM|p.R310C|1|0.13|ENSG00000026025|chr10:17234738-17234738|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.2517700195312	2	542.251286	1082.48802	0.2137	0.00011588	0.74059	0.00040158	0.95429	0.00051746	542.2516522503994	17.212	0.2044	17.212	17.139	17.343	0					17	6	4	0	0	0	0.026848	1	4265	4265		107.01	38.221	1	944440			30154	1132	20675	20747	30545	30545					-0.04992635903954579
QAKQESTEY	9	Unmodified	_QAKQESTEY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;VIM|p.R310C|1|0.13|ENSG00000026025|chr10:17234738-17234738|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2515869140625	2	542.251286	1082.48802	2.0395	0.0011059	-1.4421	-0.00078197	0.59739	0.00032393	542.2504193087956	17.44	0.55357	17.44	17.351	17.904	0					27	11	5	0	0	0	0.001056	1	5189	5189		167.23	82.313	1	3668800			30155	1132	20675	20747	30546	30546					-0.04992635903954579
QAKQESTEY	9	Unmodified	_QAKQESTEY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;VIM|p.R310C|1|0.13|ENSG00000026025|chr10:17234738-17234738|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2515869140625	2	542.251286	1082.48802	1.0622	0.00057597	0.38893	0.0002109	1.4511	0.00078686	542.2514763370527	17.273	0.22215	17.273	17.166	17.389	0					13	6	3	0	0	0	0.021015	1	4262	4262		115.49	41.239	1	436620			30156	1132	20675	20747	30547	30547					-0.04992635903954579
QALAINSSEP	10	Unmodified	_QALAINSSEP_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2640991210938	2	515.264196	1028.51384	-0.12705	-6.5463E-05	0.027917	1.4384E-05	-0.09913	-5.1078E-05	515.2642141419401	23.13	0.18647	23.13	23.066	23.252	0					9	6	2	0	0	0	0.56931	1	6908	6908		37.812	2.1932	1	73033			30157	11428	20676	20748	30548	30548					0.0007225833833217621
QALAQKGLY	9	Unmodified	_QALAQKGLY_					0	0	0		CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant;CAMSAP2|p.M1437*|7|0.32|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant	CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2810974121094	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.223	1	36.223	35.723	36.723	0								0	0	0	0.32356	1	14056	14056		30.504	1.3336	1				30158	362	20677	20749	30549	30549					0.05417760305851971
QALARVQH	8	Unmodified	_QALARVQH_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.7638854980469	2	461.764501	921.514448	0.82097	0.00037909	-1.5073	-0.00069604	-0.68638	-0.00031694	461.76374601476965	12.381	0.16123	12.381	12.296	12.457	0					9	5	2	0	0	0	0.60719	1	2627	2627		47.916	1.9636	1	99845			30159	6458	20678	20750	30550	30550					0.0505514256871038
QALCASASIH	10	Unmodified	_QALCASASIH_					0	0	0			REV__nc|ENSG00000181109|Q8NH57|OR52P1	REV__nc|ENSG00000181109|Q8NH57|OR52P1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7490234375	2	500.747659	999.480765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.225	1	14.225	13.725	14.725	0								0	0	0	0.4201	1	3041	3041		10.866	0.6003	1		+		30160	21148	20679	20751	30551	30551					-0.01899646985373238
QALEKDKPS	9	Unmodified	_QALEKDKPS_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENST00000529768.5_1_11:494693-494957:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2769470214844	2	508.274564	1014.53457	1.3196	0.00067074	1.7549	0.00089198	3.0745	0.0015627	508.2759502780823	38.403	0.63551	38.403	38.251	38.886	0					35	13	5	0	0	0	0.42902	1	15173	15173		39.253	2.0937	1	1200800			30161	1117	20680	20752	30552	30552					0.02788848718000736
QALKLDGEL	9	Unmodified	_QALKLDGEL_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3;REV__ENSG00000125414|ENST00000245503|MYH2	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.779296875	2	493.779482	985.544411	-0.6232	-0.00030772	0.31254	0.00015433	-0.31066	-0.0001534	493.7796806119309	26.971	0.97319	26.971	26.705	27.678	0					44	19	3	0	0	0	0.37197	1	9579	9579		44.117	4.864	1	542160	+		30162	13891;14428	20681	20753	30553	30553					0.05106036723384477
QALKNQLQ	8	Unmodified	_QALKNQLQ_					0	0	0		ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7717590332031	2	471.771991	941.529429	0.59209	0.00027933	-1.0042	-0.00047375	-0.4121	-0.00019442	471.7714223711149	21.33	0.26628	21.33	21.222	21.488	0					11	5	3	0	0	0	0.30437	1	6940	6940		82.305	0	1	1138300			30163	6069	20682	20754	30554	30554					0.05632589646052111
QALLVLHAQ	9	Unmodified	_QALLVLHAQ_					0	0	0		PAK4|p.S429L|1|0.38|ENSG00000130669|chr19:39175365-39175365|C/T|missense_variant	PAK4|p.S429L|1|0.38|ENSG00000130669|chr19:39175365-39175365|C/T|missense_variant	PAK4|p.S429L|1|0.38|ENSG00000130669|chr19:39175365-39175365|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7976989746094	2	496.798009	991.581465	0.71747	0.00035644	-1.7424	-0.0008656	-1.0249	-0.00050916	496.7971366612971	29.288	0.24907	29.288	29.169	29.418	0					9	6	2	0	0	0	0.062676	1	10434	10434		90.777	3.0224	1	551320			30164	11893	20683	20755	30555	30555					0.08533753059805349
QALLWHIVK	9	Unmodified	_QALLWHIVK_					0	0	0		HSPA9|p.R284W|1|0.29|ENSG00000113013|chr5:138567030-138567030|G/A|missense_variant	HSPA9|p.R284W|1|0.29|ENSG00000113013|chr5:138567030-138567030|G/A|missense_variant	HSPA9|p.R284W|1|0.29|ENSG00000113013|chr5:138567030-138567030|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.89251708984375	3	369.89396	1106.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.048	1	18.048	17.548	18.548	0								0	0	0	0.31838	1	4649	4649		31.53	2.3598	1				30165	11214	20684	20756	30556	30556					0.11098605364895775
QALQQYLAF	9	Unmodified	_QALQQYLAF_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.19427490234375	3	361.194075	1080.5604	-0.070017	-2.529E-05	0.24691	8.9182E-05	0.17689	6.3892E-05	361.19428403879425	31.617	0.16247	31.617	31.521	31.684	0					9	3	3	0	0	0	0.56424	1	11856	11856		25.574	10.241	1	258060	+		30166	16328	20685	20757	30557	30557					0.023337429602634074
QALRENTY	8	Unmodified	_QALRENTY_					0	0	0		ENSG00000113194|ENST00000261942|FAF2;ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7506103515625	2	497.751256	993.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.275	1	22.275	21.775	22.775	0								0	0	0	1.7419	1	6607	6607		51.335	1.8939	1				30167	2782	20686	20758	30558	30558					-0.009045911132830042
QALRFVIQGA	10	Unmodified	_QALRFVIQGA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.823974609375	2	551.822015	1101.62948	1.8265	0.0010079	1.8248	0.001007	3.6513	0.0020149	551.8231737839928	23.268	0.23993	23.268	23.177	23.417	0					14	5	4	0	0	0	0.32758	1	7688	7688		64.207	3.2353	1	1511900			30168	1802	20687	20759	30559	30559					0.08272826979850834
QALRGPEL	8	Unmodified	_QALRGPEL_					0	0	0			REV__TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant	REV__TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.25335693359375	2	442.253434	882.492316	-2.9268	-0.0012944	2.8178	0.0012462	-0.10898	-4.8197E-05	442.25460233035574	31.058	0.19026	31.058	30.974	31.164	0					6	5	2	0	0	0	0.6088	1	10661	10661		47.657	8.4045	1	52522	+		30169	16948	20688	20760	30560	30560					0.046369181002773985
QALRYKEL	8	Unmodified	_QALRYKEL_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.7971496582031	2	510.795466	1019.57638	-1.7844	-0.00091146	1.6856	0.000861	-0.098792	-5.0462E-05	510.79633771316645	21.666	0.12128	21.666	21.598	21.719	0					6	3	2	0	0	0	0.34985	1	6311	6311		76.847	5.5509	1	124010			30170	2482	20689	20761	30561	30561					0.06737449197191836
QALSTELLKL	10	Unmodified	_QALSTELLKL_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.3348388671875	2	558.337164	1114.65977	1.8018	0.001006	-1.5901	-0.00088782	0.21172	0.00011821	558.3363020040462	18.475	0.36063	18.475	18.294	18.655	0					22	8	4	0	0	0	0.30252	1	5384	5384		45.972	0	1	1332100			30171	4642	20690	20762	30562	30562					0.10703140854366211
QALYGKKSP	9	Unmodified	_QALYGKKSP_					0	0	0		ENST00000547685.5_1_12:56231631-56233583:-|nuORF;ENST00000552872.5_1_12:56231631-56234980:-|nuORF;ENST00000548882.5_1_12:56232267-56233517:-|nuORF;ENSG00000123342|ENST00000322569|MMP19	ENST00000547685.5_1_12:56231631-56233583:-|nuORF	ENST00000547685.5_1_12:56231631-56233583:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2818298339844	2	496.282192	990.549831	-1.1968	-0.00059394	-0.78572	-0.00038994	-1.9825	-0.00098389	496.2819384857344	35.981	0.10648	35.981	35.925	36.031	0					9	5	2	0	0	0	0.42902	1	12180	12180		39.253	5.0803	1	39024			30172	10590	20691	20763	30563	30563					0.054177603058633395
QALYHLSF	8	Unmodified	_QALYHLSF_					0	0	0		LINGO4|p.L527Sfs*3|1|0.23|ENSG00000213171|chr1:151801126-151801127|-/A|frameshift_variant;LINGO4|p.L527Wfs*21|1|0.34|ENSG00000213171|chr1:151801127-151801127|A/-|frameshift_variant;ENSG00000213171|ENST00000368820|LINGO4	LINGO4|p.L527Sfs*3|1|0.23|ENSG00000213171|chr1:151801126-151801127|-/A|frameshift_variant	LINGO4|p.L527Sfs*3|1|0.23|ENSG00000213171|chr1:151801126-151801127|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7554626464844	2	489.75581	977.497067	0.76954	0.00037689	-0.94748	-0.00046403	-0.17794	-8.7146E-05	489.7552579715384	41.362	0.26109	41.362	41.269	41.53	0					10	6	2	0	0	0	0.52345	1	16460	16460		57.811	1.0902	1	133450			30173	7784	20692	20764	30564	30564					0.007418022430442761
QAMAKYMAL	9	Unmodified	_QAMAKYMAL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7593383789062	2	513.759181	1025.50381	0.63152	0.00032445	0.082434	4.2351E-05	0.71395	0.0003668	513.7587779664759	37.91	0.094994	37.91	37.853	37.948	0					5	3	2	0	0	0	0.50461	1	14863	14863		31.955	1.4512	1	62659			30174	4676	20693	20765	30565	30565					-0.007923441922457641
QAMAKYMAL	9	Unmodified	_QAMAKYMAL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7601928710938	2	513.759181	1025.50381	0.10041	5.1587E-05	0.48422	0.00024877	0.58463	0.00030036	513.7596077399392	37.861	0.20687	37.861	37.754	37.961	0					7	4	2	0	0	0	0.13519	1	14825	14825		71.296	21.271	1	152380			30175	4676	20693	20765	30566	30566					-0.007923441922457641
QAMDVSNQL	9	Unmodified	_QAMDVSNQL_					0	0	0		ENST00000479578.5_1_1:110200431-110200590:+|nuORF;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4	ENST00000479578.5_1_1:110200431-110200590:+|nuORF	ENST00000479578.5_1_1:110200431-110200590:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2369079589844	2	503.237124	1004.45969	0.0737	3.7089E-05	-1.3068	-0.00065761	-1.2331	-0.00062053	503.23692670350823	36.262	0.12083	36.262	36.214	36.334	0					6	3	2	0	0	0	0.11898	1	14120	14120		75.043	14.071	1	70895			30176	6120	20694	20766	30567	30567					-0.04235657084882405
QAMKQWEY	8	Unmodified	_QAMKQWEY_					0	0	0		MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant;MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant;MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L;MED12L|p.K248Nfs*5|1|0.32|ENSG00000144893|chr3:151158702-151158702|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;MED12L|p.S1098Pfs*15|1|0.19|ENSG00000144893|chr3:151367711-151367711|T/-|frameshift_variant;MED12L|p.S1098Ffs*63|1|0.23|ENSG00000144893|chr3:151367710-151367711|-/T|frameshift_variant	MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant	MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2515869140625	2	542.250034	1082.48552	2.0367	0.0011044	0.9548	0.00051774	2.9915	0.0016221	542.2505172060155	17.451	0.35678	17.451	17.326	17.683	0					23	7	5	0	0	0	0.37378	1	5032	5032		73.975	73.975	1	3670900			30177	4649	20695	20767	30568	30568					-0.05242762842613047
QAMKQWEY	8	Unmodified	_QAMKQWEY_					0	0	0		MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant;MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant;MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L;MED12L|p.K248Nfs*5|1|0.32|ENSG00000144893|chr3:151158702-151158702|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;MED12L|p.S1098Pfs*15|1|0.19|ENSG00000144893|chr3:151367711-151367711|T/-|frameshift_variant;MED12L|p.S1098Ffs*63|1|0.23|ENSG00000144893|chr3:151367710-151367711|-/T|frameshift_variant	MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant	MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2523803710938	2	542.250034	1082.48552	3.5756	0.0019389	-0.44801	-0.00024293	3.1276	0.0016959	542.2498024529239	17.455	0.3561	17.455	17.31	17.666	0					19	7	4	0	0	0	0.37378	1	5029	5029		73.975	73.975	1	3532000			30178	4649	20695	20767	30569	30569					-0.05242762842613047
QAMPTPTSQL	10	Unmodified	_QAMPTPTSQL_					0	0	0			REV__NPAS2|p.A490T|1|0.44|ENSG00000170485|chr2:100977785-100977785|G/A|missense_variant	REV__NPAS2|p.A490T|1|0.44|ENSG00000170485|chr2:100977785-100977785|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2693481445312	2	537.268424	1072.5223	1.033	0.000555	0.99155	0.00053273	2.0245	0.0010877	537.2690065720291	39.076	0.95742	39.076	38.867	39.825	0					87	50	2	0	0	0	0.62235	1	14083	14083		31.53	1.2121	1	116180	+		30179	21302	20696	20768	30570	30570					-0.011065110166782688
QAMWALGDKI	10	Unmodified	_QAMWALGDKI_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.7964477539062	2	566.794609	1131.57467	0.22642	0.00012833	2.7811	0.0015763	3.0075	0.0017046	566.7960437777667	16.466	0.48185	16.466	16.18	16.662	0					28	11	4	0	0	0	0.26198	1	4489	4489		71.877	16.794	1	382690			30180	29	20697	20769	30571	30571					0.014140721169269455
QANDDARTF	9	Unmodified	_QANDDARTF_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2369384765625	2	519.23597	1036.45739	1.4251	0.00073995	-0.84755	-0.00044008	0.57753	0.00029987	519.2354836787155	21.993	0.18446	21.993	21.954	22.138	0					7	5	2	0	0	0	0.22837	1	6158	6158		58.23	15.834	1	84050			30181	6833	20698	20770	30572	30572					-0.059383694983580426
QANDDARTF	9	Unmodified	_QANDDARTF_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.236328125	2	519.23597	1036.45739	1.3798	0.00071645	-0.90158	-0.00046813	0.47823	0.00024831	519.2354816179976	22.344	0.36597	22.344	22.209	22.575	0					13	8	3	0	0	0	0.22837	1	7234	7234		58.23	8.7884	1	574290			30182	6833	20698	20770	30573	30573					-0.059383694983580426
QANDDARTF	9	Unmodified	_QANDDARTF_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.236328125	2	519.23597	1036.45739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.072	1	22.072	21.572	22.572	0								0	0	0	0.30009	1	6440	6440		35.152	6.0025	1				30183	6833	20698	20770	30574	30574					-0.059383694983580426
QANDDARTF	9	Unmodified	_QANDDARTF_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2359619140625	2	519.23597	1036.45739	1.1259	0.00058463	-0.76571	-0.00039759	0.36022	0.00018704	519.2355485296176	22.228	0.21428	22.228	22.119	22.334	0					9	4	3	0	0	0	0.022525	1	7504	7504		117.81	30.115	1	445480			30184	6833	20698	20770	30575	30575					-0.059383694983580426
QANGPVAKK	9	Unmodified	_QANGPVAKK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.76605224609375	2	456.766709	911.518865	0.72162	0.00032961	-1.395	-0.00063719	-0.67338	-0.00030758	456.76602746492506	12.102	0.13273	12.102	12.018	12.151	0					6	3	2	0	0	0	0.036372	1	2636	2636		102.77	22.834	1	690010			30185	5871	20699	20771	30576	30576					0.05956606991605895
QANRSQKPT	9	Unmodified	_QANRSQKPT_					0	0	0		ENST00000300952.6_1_19:1257715-1257928:+|nuORF	ENST00000300952.6_1_19:1257715-1257928:+|nuORF	ENST00000300952.6_1_19:1257715-1257928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8540954589844	3	343.852712	1028.53631	3.0264	0.0010406	0.80093	0.0002754	3.8274	0.0013161	343.852983059936	20.402	0.61823	20.402	20.209	20.828	0					24	12	3	0	0	0	0.22377	1	6468	6468		75.043	16.797	1	4084100			30186	8488	20700	20772	30577	30577					0.023179025266244935
QANVNNTNY	9	Unmodified	_QANVNNTNY_					0	0	0		sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2360229492188	2	519.23597	1036.45739	0.28662	0.00014882	0.050773	2.6363E-05	0.33739	0.00017519	519.2360186871766	22.246	0.26547	22.246	22.138	22.404	0					11	5	3	0	0	0	0.12239	1	7382	7382		74.255	16.444	1	554910			30187	22457	20701	20773	30578	30578					-0.059383694983580426
QANYTIQSL	9	Unmodified	_QANYTIQSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2664184570312	2	519.266739	1036.51892	1.383	0.00071813	0.20065	0.00010419	1.5836	0.00082232	519.2661608020237	42.108	0.16674	42.108	42.004	42.171	0					12	8	2	0	0	0	0.12834	1	15961	15961		72.879	6.45	1	54950			30188	1742	20702	20774	30579	30579					0.0021256220097711775
QANYTIQSL	9	Unmodified	_QANYTIQSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.266357421875	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.022	1	42.022	41.522	42.522	0								0	0	0	0.012693	1	16747	16747		106.68	5.0824	1				30189	1742	20702	20774	30580	30580					0.0021256220097711775
QANYTIQSL	9	Unmodified	_QANYTIQSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2665405273438	2	519.266739	1036.51892	1.6015	0.00083159	-1.4348	-0.00074504	0.16668	8.6554E-05	519.2661871369345	42.028	0.23946	42.028	41.942	42.181	0					10	6	2	0	0	0	0.14578	1	16741	16741		68.846	8.7279	1	177480			30190	1742	20702	20774	30581	30581					0.0021256220097711775
QAPALQVG	8	Unmodified	_QAPALQVG_					0	0	0			REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.2216796875	2	392.221603	782.428653	-0.67344	-0.00026414	0.14437	5.6625E-05	-0.52907	-0.00020751	392.2216711213323	17.552	0.32107	17.552	17.43	17.751	0					10	6	2	0	0	0	0.76283	1	5118	5118		25.45	3.7478	1	171120	+		30191	21258	20703	20775	30582	30582					0.028735576631788717
QAPGADLGVAP	11	Unmodified	_QAPGADLGVAP_					0	0	0			REV__ENST00000414744.2_1_17:26926168-26926465:+|nuORF	REV__ENST00000414744.2_1_17:26926168-26926465:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2612609863281	2	498.261456	994.50836	-0.023099	-1.1509E-05	-0.63202	-0.00031491	-0.65512	-0.00032642	498.26121195496506	22.179	0.16612	22.179	22.07	22.237	0					9	3	3	0	0	0	0.49805	1	7479	7479		44.377	6.869	1	301020	+		30192	19023	20704	20776	30583	30583					0.010885795465242154
QAPGTRPAMAE	11	Unmodified	_QAPGTRPAMAE_					0	0	0			REV__ENSG00000196428|ENST00000688009|TSC22D2	REV__ENSG00000196428|ENST00000688009|TSC22D2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.777587890625	2	564.776948	1127.53934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.654	1	13.654	13.154	14.154	0								0	0	0	0.41817	1	3155	3155		30.318	4.7437	1		+		30193	17253	20705	20777	30584	30584					-0.01932590410888224
QAPKVTRLL	9	Unmodified	_QAPKVTRLL_					0	0	0			REV__ENST00000481773.1_1_3:113933257-113952219:+|nuORF	REV__ENST00000481773.1_1_3:113933257-113952219:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.3268432617188	2	513.326934	1024.63931	1.1028	0.00056608	-0.057109	-2.9315E-05	1.0457	0.00053676	513.3268924310784	11.16	0.2245	11.16	11.006	11.231	0					28	12	3	0	0	0	0.1424	1	2101	2101		44.117	0	1	260140	+		30194	19604	20706	20778	30585	30585					0.12798014985219197
QAPQPQSSL	9	Unmodified	_QAPQPQSSL_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2452392578125	2	478.245806	954.47706	-1.4574	-0.000697	0.76015	0.00036354	-0.69725	-0.00033346	478.24621687861156	27.525	0.413	27.525	27.356	27.769	0					30	14	3	0	0	0	0.25761	1	8760	8760		54.722	5.2808	1	186560			30195	4570	20707	20779	30586	30586					-0.001999934875584586
QAPQPQSSL	9	Unmodified	_QAPQPQSSL_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2457275390625	2	478.245806	954.47706	0.65295	0.00031227	-1.1583	-0.00055394	-0.50533	-0.00024167	478.2452017762637	27.771	0.45363	27.771	27.601	28.055	0					24	9	4	0	0	0	0.028876	1	10129	10129		110.12	5.3733	1	892160			30196	4570	20707	20779	30587	30587					-0.001999934875584586
QAPSAAAAT	9	Unmodified	_QAPSAAAAT_					0	0	0		ENSG00000163132|ENST00000382723|MSX1;MSX1|p.A50Gfs*125|1|1.0|ENSG00000163132|chr4:4860042-4860043|-/G|frameshift_variant	ENSG00000163132|ENST00000382723|MSX1	ENSG00000163132|ENST00000382723|MSX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.1988525390625	2	394.200867	786.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.038	1	48.038	47.538	48.538	0								0	0	0	0.35899	1	16004	16004		23.042	0	1				30197	5531	20708	20780	30588	30588					-0.014556230961602523
QAPSYGARPV	10	Unmodified	_QAPSYGARPV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2760009765625	2	523.274898	1044.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.009	1	24.009	23.509	24.509	0								0	0	0	0.35072	1	7288	7288		42.864	10.909	1				30198	2650	20709	20781	30589	30589					0.014756881576886371
QAPSYGARPV	10	Unmodified	_QAPSYGARPV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2758178710938	2	523.274898	1044.53524	1.1066	0.00057904	-0.23354	-0.00012221	0.87303	0.00045683	523.2746637297447	24.067	0.26332	24.067	23.926	24.189	0					14	6	3	0	0	0	0.39827	1	7424	7424		56.434	17.628	1	125870			30199	2650	20709	20781	30590	30590					0.014756881576886371
QAPTRFWW	8	Unmodified	_QAPTRFWW_					0	0	0			REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2770385742188	2	546.274701	1090.53485	1.8783	0.001026	2.2837	0.0012475	4.162	0.0022736	546.2758683529274	12.184	0.17898	12.184	12.097	12.276	0					7	4	3	0	0	0	0.59411	1	2672	2672		50.025	4.0523	1	348220	+		30200	19603	20710	20782	30591	30591					-0.006796867714911059
QAPVTDVLPD	10	Unmodified	_QAPVTDVLPD_					0	0	0		ENSG00000236980|ENST00000545770|C3orf84	ENSG00000236980|ENST00000545770|C3orf84	ENSG00000236980|ENST00000545770|C3orf84	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7767333984375	2	527.774396	1053.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.53	1	30.53	30.03	31.03	0								0	0	0	0.37129	1	9739	9739		39.253	6.4404	1				30201	7912	20711	20783	30592	30592					0.009614289981300317
QAQDHKGGP	9	Unmodified	_QAQDHKGGP_					0	0	0			REV__ENST00000474879.6_3_22:50941400-50941703:-|nuORF	REV__ENST00000474879.6_3_22:50941400-50941703:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2284851074219	2	469.227948	936.441343	0.020644	9.6866E-06	0.63179	0.00029645	0.65243	0.00030614	469.2281438979259	19.571	0.25089	19.571	19.431	19.682	0					10	7	2	0	0	0	0.51817	1	5079	5079		30.504	2.2494	1	69518	+		30202	19522	20712	20784	30593	30593					-0.02942030944564067
QAQDLHLE	8	Unmodified	_QAQDLHLE_					0	0	0		ENST00000439384.5_3_7:29186332-29186525:+|nuORF	ENST00000439384.5_3_7:29186332-29186525:+|nuORF	ENST00000439384.5_3_7:29186332-29186525:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.23736572265625	2	477.237981	952.461409	-2.8232	-0.0013473	1.4118	0.00067374	-1.4115	-0.0006736	477.2387650916004	17.777	0.099195	17.777	17.723	17.823	0					6	2	3	0	0	0	0.37144	1	4512	4512		74.255	2.9593	1	176290			30203	9562	20713	20785	30594	30594					-0.016722800046181874
QAQEVFFLK	9	Unmodified	_QAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.8060302734375	2	555.303124	1108.5917	1.8133	0.0010069	-0.23784	-0.00013208	1.5755	0.00087485	555.3028996445768	42.624	0.30748	42.624	42.504	42.812	0					41	15	4	0	0	0	0.42902	1	16105	16105		39.253	5.0803	1	425640			30204	6220	20714	20786	30595	30595					0.04174315994373501
QAQEVFFLK	9	Unmodified	_QAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.3055419921875	2	555.303124	1108.5917	0.53367	0.00029635	0.31452	0.00017465	0.84819	0.000471	555.3032999138807	42.549	0.3987	42.549	42.447	42.846	0					49	19	4	0	0	0	0.098791	1	16671	16671		79.713	15.505	1	1096100			30205	6220	20714	20786	30596	30596					0.04174315994373501
QAQEVFFLK	9	Unmodified	_QAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.3052368164062	2	555.303124	1108.5917	1.7134	0.00095146	0.32949	0.00018297	2.0429	0.0011344	555.303377435445	42.344	0.19575	42.344	42.254	42.45	0					26	11	3	0	0	0	0.30951	1	14798	14798		49.442	15.269	1	175220			30206	6220	20714	20786	30597	30597					0.04174315994373501
QAQEVFFLK	9	Unmodified	_QAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENST00000459659.1_1_3:33863478-33868168:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.303466796875	2	555.303124	1108.5917	1.0611	0.00058921	-0.36508	-0.00020273	0.69598	0.00038648	555.3029779662787	42.53	0.41844	42.53	42.383	42.802	0					34	11	5	0	0	0	0.0792	1	16951	16951		84.916	84.916	1	2530800			30207	6220	20714	20786	30598	30598					0.04174315994373501
QAQGREIKQ	9	Unmodified	_QAQGREIKQ_					0	0	0			REV__ENST00000206513.5_1_14:23588379-23588439:-|nuORF	REV__ENST00000206513.5_1_14:23588379-23588439:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2908325195312	2	529.291079	1056.56761	0.11168	5.911E-05	-0.36434	-0.00019284	-0.25266	-0.00013373	529.2910182104949	15.405	0.26057	15.405	15.23	15.49	0					11	6	2	0	0	0	0.5741	1	3981	3981		24.519	0	1	321960	+		30208	17873	20715	20787	30599	30599					0.04158475560689112
QAQHGRRP	8	Unmodified	_QAQHGRRP_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2587890625	2	475.257374	948.500195	3.6051	0.0017134	-2.5582	-0.0012158	1.0469	0.00049755	475.25689383269156	23.316	0.13338	23.316	23.252	23.385	0					7	4	2	0	0	0	0.75243	1	7000	7000		26.796	2.5934	1	40279			30209	5894	20716	20788	30600	30600					0.023884901404244374
QAQLQREKE	9	Unmodified	_QAQLQREKE_					0	0	0		CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant;nc|ENSG00000183137|Q8IYX8-2|CEP57L1;CEP57L1|p.N421Ifs*7|1|0.13|ENSG00000183137|chr6:109162844-109162844|A/-|frameshift_variant;ENSG00000183137|ENST00000517392|CEP57L1	CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant	CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.3041381835938	2	565.301644	1128.58874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.506	1	19.506	19.006	20.006	0								0	0	0	0.31222	1	5057	5057		32.812	1.2826	1				30210	487	20717	20789	30601	30601					0.02958440869565493
QAQPPQSLS	9	Unmodified	_QAQPPQSLS_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.24517822265625	2	478.245806	954.47706	-0.32424	-0.00015507	0.84037	0.0004019	0.51613	0.00024684	478.245568840542	27.533	0.34247	27.533	27.414	27.756	0					18	8	3	0	0	0	0.24095	1	9051	9051		56.721	3.7844	1	134000			30211	1076	20718	20790	30602	30602					-0.001999934875584586
QAQRARGAPG	10	Unmodified	_QAQRARGAPG_					0	0	0			REV__ENST00000505443.1_1_5:3531983-3536103:-|nuORF	REV__ENST00000505443.1_1_5:3531983-3536103:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.2776184082031	2	506.275764	1010.53697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.158	1	39.158	38.658	39.658	0								0	0	0	0.38322	1	13977	13977		35.618	3.6634	1		+		30212	19833	20719	20791	30603	30603					0.03212741966331123
QAQTRPSIG	9	Unmodified	_QAQTRPSIG_					0	0	0			REV__ENST00000250894.8_2_16:1819320-1819737:+|nuORF	REV__ENST00000250894.8_2_16:1819320-1819737:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.25921630859375	2	479.259248	956.503943	0.66333	0.00031791	-1.3954	-0.00066874	-0.73204	-0.00035084	479.25863142458763	12.535	0.1747	12.535	12.427	12.601	0					9	4	3	0	0	0	0.20551	1	2845	2845		60.972	0	1	313000	+		30213	17963	20720	20792	30604	30604					0.023951151236133228
QARAAVDTY	9	Unmodified	_QARAAVDTY_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.75091552734375	2	497.751256	993.487959	0.7004	0.00034863	-1.1362	-0.00056554	-0.43578	-0.00021691	497.75075925579796	22.438	0.31343	22.438	22.384	22.698	0					11	7	3	0	0	0	0.014688	1	7301	7301		131.03	43.277	1	673590			30214	7325	20721	20793	30605	30605					-0.009045911133057416
QARAAVDTY	9	Unmodified	_QARAAVDTY_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7511291503906	2	497.751256	993.487959	-1.1285	-0.00056169	1.0219	0.00050865	-0.10656	-5.3038E-05	497.75167897456896	22.172	0.13573	22.172	22.101	22.236	0					10	4	3	0	0	0	0.2873	1	6477	6477		51.335	10.557	1	204240			30215	7325	20721	20793	30606	30606					-0.009045911133057416
QARAAVDTY	9	Unmodified	_QARAAVDTY_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.75140380859375	2	497.751256	993.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.357	1	22.357	21.857	22.857	0								0	0	0	0.024201	1	7425	7425		98.629	10.875	1				30216	7325	20721	20793	30607	30607					-0.009045911133057416
QARAQQARAK	10	Unmodified	_QARAQQARAK_					0	0	0			REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.3240966796875	2	564.323245	1126.63194	1.2368	0.00069798	-1.0865	-0.00061314	0.15033	8.4836E-05	564.3226579246334	12.721	0.32235	12.721	12.527	12.849	0					25	18	2	0	0	0	0.75732	1	2417	2417		3.1592	0	1	55262	+		30217	12239	20722	20794	30608	30608					0.07368675437510319
QAREDTPQQ	9	Unmodified	_QAREDTPQQ_					0	0	0			REV__ENST00000562306.5_1_15:62539611-62540700:-|nuORF	REV__ENST00000562306.5_1_15:62539611-62540700:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7572021484375	2	536.754527	1071.4945	1.0475	0.00056227	3.8845	0.002085	4.932	0.0026473	536.7562879061501	27.83	0.30657	27.83	27.658	27.964	0					12	7	2	0	0	0	0.54267	1	9166	9166		27.882	2.3082	1	91547	+		30218	20305	20723	20795	30609	30609					-0.03838697952573966
QARELLAAL	9	Unmodified	_QARELLAAL_					0	0	0		CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP	CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant	CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2958984375	2	492.795466	983.57638	-0.59769	-0.00029454	-0.49314	-0.00024302	-1.0908	-0.00053756	492.7953206736512	25.17	0.36118	25.17	24.869	25.23	0					14	7	2	0	0	0	0.48389	1	8722	8722		34.173	2.6427	1	373050			30219	509	20724	20796	30610	30610					0.08393449197183145
QARIEIESF	9	Unmodified	_QARIEIESF_					0	0	0		HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7886962890625	2	546.787838	1091.56112	1.6946	0.00092661	0.15146	8.2818E-05	1.8461	0.0010094	546.7879754569848	39.6	0.19837	39.6	39.521	39.72	0					20	11	3	0	0	0	0.11898	1	12836	12836		68.787	2.3575	1	90762			30220	1211	20725	20797	30611	30611					0.019005376093446102
QARIEIESF	9	Unmodified	_QARIEIESF_					0	0	0		HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7883911132812	2	546.787838	1091.56112	1.8531	0.0010132	-0.81794	-0.00044724	1.0351	0.000566	546.7873447533615	39.859	0.54641	39.859	39.6	40.146	0					39	19	4	0	0	0	0.032383	1	15682	15682		101.6	30.305	1	1105100			30221	1211	20725	20797	30612	30612					0.019005376093446102
QARIEIESF	9	Unmodified	_QARIEIESF_					0	0	0		HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7886352539062	2	546.787838	1091.56112	3.8072	0.0020818	-3.0501	-0.0016678	0.75711	0.00041398	546.7864662747651	39.814	0.54885	39.814	39.543	40.092	0					27	12	4	0	0	0	0.032383	1	15771	15771		101.6	24.827	1	812820			30222	1211	20725	20797	30613	30613					0.019005376093446102
QARITKCD	8	Unmodified	_QARITKCD_					0	0	0			REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.74212646484375	2	467.742376	933.4702	0.64305	0.00030078	-0.62291	-0.00029136	0.020138	9.4195E-06	467.7421107479365	39.574	0.87215	39.574	39.428	40.301	0					64	31	4	0	0	0	0.66989	1	15529	15529		37.812	37.812	1	4910500	+		30223	18946	20726	20798	30614	30614					0.0008037036019459265
QARLSDTA	8	Unmodified	_QARLSDTA_					0	0	0		ENSG00000182168|ENST00000453304|UNC5C;UNC5C|p.Q860Rfs*14|1|0.28|ENSG00000182168|chr4:95170206-95170206|G/-|frameshift_variant;nc|ENSG00000182168|O95185-2|UNC5C;ENSG00000107731|ENST00000335350|UNC5B;nc|ENSG00000107731|Q8IZJ1-2|UNC5B	ENSG00000182168|ENST00000453304|UNC5C;ENSG00000107731|ENST00000335350|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.740234375	2	431.224874	860.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.656	1	17.656	17.156	18.156	0								0	0	0	1.7419	1	4447	4447		27.882	4.8398	1				30224	6881;2492	20727	20799	30615	30615					-0.0006054917611209021
QARPSGECFT	10	Unmodified	_QARPSGECFT_					0	0	0			REV__RNASEL|p.M644*|2|0.18|ENSG00000135828|chr1:182576365-182576365|T/-|frameshift_variant	REV__RNASEL|p.M644*|2|0.18|ENSG00000135828|chr1:182576365-182576365|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.249755859375	2	548.248023	1094.48149	0.63925	0.00035047	-0.08395	-4.6026E-05	0.5553	0.00030444	548.2481210042189	20.988	0.96165	20.988	20.88	21.842	0					45	19	5	0	0	0	0.55603	1	7025	7025		39.253	0	1	3194300	+		30225	14822	20728	20800	30616	30616					-0.06196852336302072
QARRVSEAAGL	11	Unmodified	_QARRVSEAAGL_					0	0	0			REV__ENSG00000179163|ENST00000374479|FUCA1	REV__ENSG00000179163|ENST00000374479|FUCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.3233032226562	2	579.322911	1156.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.303	1	14.303	13.803	14.803	0								0	0	0	0.41817	1	3680	3680		17.468	0	1		+		30226	16766	20729	20801	30617	30617					0.05921835997787639
QASALSITY	9	Unmodified	_QASALSITY_					0	0	0			REV__ENSG00000125879|ENST00000246081|OTOR	REV__ENSG00000125879|ENST00000246081|OTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2508239746094	2	477.250557	952.486562	-0.033381	-1.5931E-05	-0.32923	-0.00015713	-0.36261	-0.00017306	477.2505939756852	25.365	0.14891	25.365	25.265	25.414	0					5	3	2	0	0	0	0.071197	1	8044	8044		87.754	5.4493	1	89335	+		30227	14447	20730	20802	30618	30618					0.008417747979365231
QASDVSVKY	9	Unmodified	_QASDVSVKY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.G216Rfs*3|1|0.34|ENSG00000047410|chr1:186362887-186362888|-/T|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.7533874511719	2	498.753464	995.492375	0.26282	0.00013108	-0.97277	-0.00048517	-0.70995	-0.00035409	498.75330786366493	25.873	0.44511	25.873	25.675	26.12	0					29	11	4	0	0	0	0.0097668	1	7804	7804		141.52	51.151	1	2187900			30228	1219	20731	20803	30619	30619					-0.0055512669038080276
QASDVSVKY	9	Unmodified	_QASDVSVKY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.G216Rfs*3|1|0.34|ENSG00000047410|chr1:186362887-186362888|-/T|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.7534484863281	2	498.753464	995.492375	0.68277	0.00034053	-2.1457	-0.0010702	-1.4629	-0.00072964	498.75305424774206	26.129	0.58988	26.129	25.957	26.547	0					41	14	5	0	0	0	0.032383	1	8984	8984		106.68	21.324	1	20344000			30229	1219	20731	20803	30620	30620					-0.0055512669038080276
QASDVSVKY	9	Unmodified	_QASDVSVKY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.G216Rfs*3|1|0.34|ENSG00000047410|chr1:186362887-186362888|-/T|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.753173828125	2	498.753464	995.492375	-0.018823	-9.3883E-06	-0.13614	-6.7903E-05	-0.15497	-7.7291E-05	498.75343161625267	26.142	0.96102	26.142	25.983	26.944	0					37	19	4	0	0	0	0.026538	1	9307	9307		112.41	30.106	1	9503600			30230	1219	20731	20803	30621	30621					-0.0055512669038080276
QASDVSVKY	9	Unmodified	_QASDVSVKY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.G216Rfs*3|1|0.34|ENSG00000047410|chr1:186362887-186362888|-/T|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7532653808594	2	498.753464	995.492375	-0.29018	-0.00014473	-0.68555	-0.00034192	-0.97572	-0.00048665	498.75337292997284	25.974	0.36098	25.974	25.789	26.15	0					19	6	4	0	0	0	0.063171	1	8282	8282		90.601	8.3603	1	1660500			30231	1219	20731	20803	30622	30622					-0.0055512669038080276
QASDVSVKY	9	Unmodified	_QASDVSVKY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.G216Rfs*3|1|0.34|ENSG00000047410|chr1:186362887-186362888|-/T|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.7532653808594	2	498.753464	995.492375	0.17062	8.5095E-05	-1.5352	-0.00076569	-1.3646	-0.0006806	498.7532233860401	25.958	0.4382	25.958	25.778	26.216	0					21	8	3	0	0	0	0.015496	1	8297	8297		129.42	46.134	1	2134300			30232	1219	20731	20803	30623	30623					-0.0055512669038080276
QASDVSVKY	9	Unmodified	_QASDVSVKY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.G216Rfs*3|1|0.34|ENSG00000047410|chr1:186362887-186362888|-/T|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7531433105469	2	498.753464	995.492375	-0.73515	-0.00036666	-0.63705	-0.00031773	-1.3722	-0.00068439	498.75359743396035	26.107	0.97016	26.107	25.898	26.868	0					51	19	6	0	0	0	0.032383	1	9168	9168		106.68	24.378	1	13710000			30233	1219	20731	20803	30624	30624					-0.0055512669038080276
QASDVSVKY	9	Unmodified	_QASDVSVKY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.G216Rfs*3|1|0.34|ENSG00000047410|chr1:186362887-186362888|-/T|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.75347900390625	2	498.753464	995.492375	1.0455	0.00052144	-2.8207	-0.0014068	-1.7752	-0.00088537	498.7529525415538	26.078	0.95377	26.078	25.498	26.451	0					37	17	4	0	0	0	0.0047071	1	9184	9184		159.28	61.803	1	12453000			30234	1219	20731	20803	30625	30625					-0.0055512669038080276
QASKVRTG	8	Unmodified	_QASKVRTG_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.74139404296875	2	423.743234	845.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.869	1	12.869	12.369	13.369	0								0	0	0	1.7419	1	2847	2847		29.15	3.6994	1		+		30235	16007	20732	20804	30626	30626					0.04299747440484225
QASLSFQAL	9	Unmodified	_QASLSFQAL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.757568359375	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.088	1	25.088	24.588	25.588	0								0	0	0	0.35377	1	7761	7761		24.519	0.99649	1				30236	5667	20733	20805	30627	30627					0.01933481034848228
QASPAPSLR	9	Unmodified	_QASPAPSLR_					0	0	0		SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant;ENSG00000161640|ENST00000447370|SIGLEC11;ENST00000357375.4_1_19:51914355-51919928:-|nuORF;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10	SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant	SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7560729980469	2	463.756341	925.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.766	1	14.766	14.266	15.266	0								0	0	0	0.18645	1	3901	3901		52.937	12.159	1				30237	5417	20734	20806	30628	30628					0.03240016611937335
QASQLSNSY	9	Unmodified	_QASQLSNSY_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2323303222656	2	499.232896	996.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.744	1	27.744	27.244	28.244	0								0	0	0	0.33579	1	8590	8590		28.081	2.6313	1				30238	4172	20735	20807	30629	30629					-0.047128877298519
QASREAPAQR	10	Unmodified	_QASREAPAQR_					0	0	0		ENSG00000168754|ENST00000490605|FAM178B;FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant;FAM178B|p.G341Afs*92|1|0.45|ENSG00000168754|chr2:96970764-96970764|C/-|frameshift_variant;FAM178B|p.A733Gfs*2|1|0.12|ENSG00000168754|chr2:96893950-96893951|-/T|frameshift_variant	ENSG00000168754|ENST00000490605|FAM178B	ENSG00000168754|ENST00000490605|FAM178B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.3533935546875	2	557.291611	1112.56867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.28	1	18.28	17.78	18.78	0								0	0	0	0.34115	1	5583	5583		44.377	5.1244	1				30239	6116	20736	20808	30630	30630					0.01688689929596876
QASRRKHK	8	Unmodified	_QASRRKHK_					0	0	0		ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF	ENST00000560184.5_1_15:90408823-90437190:-|nuORF	ENST00000560184.5_1_15:90408823-90437190:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.8031311035156	2	505.801949	1009.58934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.477	1	15.477	14.977	15.977	0								0	0	0	1.7419	1	3537	3537		44.117	3.5442	1				30240	10685	20737	20809	30631	30631					0.0849332509993701
QASSAAFRY	9	Unmodified	_QASSAAFRY_					0	0	0		FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant;ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567|FAM168A	FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant	FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.74578857421875	2	500.745973	999.477394	0.01677	8.3974E-06	-0.39553	-0.00019806	-0.37876	-0.00018966	500.7458788003823	28.724	0.16682	28.724	28.628	28.795	0					6	3	2	0	0	0	0.54081	1	10574	10574		27.882	2.4321	1	190970			30241	1275	20738	20810	30632	30632					-0.02236573767720529
QASSAAFRY	9	Unmodified	_QASSAAFRY_					0	0	0		FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant;ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567|FAM168A	FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant	FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7457580566406	2	500.745973	999.477394	-0.63133	-0.00031613	0.57666	0.00028876	-0.054663	-2.7372E-05	500.7461744440846	28.666	0.16681	28.666	28.558	28.724	0					8	3	3	0	0	0	0.41958	1	10425	10425		40.778	3.6191	1	301090			30242	1275	20738	20810	30633	30633					-0.02236573767720529
QASSQTLTL	9	Unmodified	_QASSQTLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.753173828125	2	474.753464	947.492375	0.30083	0.00014282	-1.1092	-0.0005266	-0.80838	-0.00038378	474.7529495282219	37.604	0.39727	37.604	37.462	37.859	0					26	12	3	0	0	0	0.070005	1	14259	14259		88.177	14.202	1	700200			30243	1085	20739	20811	30634	30634					0.01652873309626557
QASSQTLTL	9	Unmodified	_QASSQTLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7529602050781	2	474.753464	947.492375	-0.12041	-5.7163E-05	-0.28325	-0.00013447	-0.40365	-0.00019164	474.753286768985	37.537	0.43639	37.537	37.428	37.864	0					29	13	3	0	0	0	0.026538	1	14682	14682		112.41	30.106	1	710240			30244	1085	20739	20811	30635	30635					0.01652873309626557
QASSQTLTL	9	Unmodified	_QASSQTLTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7532043457031	2	474.753464	947.492375	-0.60324	-0.00028639	0.022727	1.079E-05	-0.58051	-0.0002756	474.75350501001355	37.527	0.50574	37.527	37.315	37.821	0					25	10	4	0	0	0	0.10506	1	14643	14643		78.264	1.4896	1	1166800			30245	1085	20739	20811	30636	30636					0.01652873309626557
QASSTLLLV	9	Unmodified	_QASSTLLLV_					0	0	0		ENST00000261839.11_1_15:52548900-52553134:-|nuORF	ENST00000261839.11_1_15:52548900-52553134:-|nuORF	ENST00000261839.11_1_15:52548900-52553134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2778015136719	2	466.276575	930.538597	-0.13488	-6.2889E-05	-0.1156	-5.3903E-05	-0.25048	-0.00011679	466.27645642552716	33.847	1.0571	33.847	33.02	34.077	0					58	25	3	0	0	0	0.50461	1	12703	12703		31.955	4.0726	1	510210			30246	8302	20740	20812	30637	30637					0.07054938211729223
QASTVVTYVY	10	Unmodified	_QASTVVTYVY_					0	0	0		nc|ENSG00000111237|Q9UBQ0-2|VPS29;ENSG00000111237|ENST00000549578|VPS29	nc|ENSG00000111237|Q9UBQ0-2|VPS29	nc|ENSG00000111237|Q9UBQ0-2|VPS29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.7898559570312	2	565.790047	1129.56554	1.7716	0.0010023	-0.49223	-0.0002785	1.2793	0.00072384	565.7896927800002	43.243	0.12164	43.243	43.17	43.291	0					10	7	2	0	0	0	0.44601	1	16325	16325		51.193	12.387	1	38486			30247	2655	20741	20813	30638	30638					0.005940020322441342
QASTVVTYVY	10	Unmodified	_QASTVVTYVY_					0	0	0		nc|ENSG00000111237|Q9UBQ0-2|VPS29;ENSG00000111237|ENST00000549578|VPS29	nc|ENSG00000111237|Q9UBQ0-2|VPS29	nc|ENSG00000111237|Q9UBQ0-2|VPS29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.7907104492188	2	565.790047	1129.56554	1.7086	0.00096673	-0.41477	-0.00023467	1.2939	0.00073205	565.7897268225611	43.151	0.24773	43.151	43.023	43.27	0					10	7	2	0	0	0	0.27065	1	17256	17256		70.816	14.095	1	82575			30248	2655	20741	20813	30639	30639					0.005940020322441342
QASVISCYI	9	Carbamidomethyl (C)	_QASVISC(Carbamidomethyl (C))YI_	QASVISC(1)YI		QASVISC(61)YI		0	1	0		nc|ENSG00000184716|A6NH21-2|SERINC4;ENST00000448553.5_1_15:44087200-44089477:-|nuORF;nc|ENSG00000184716|A6NH21|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2623901367188	2	520.757692	1039.50083	1.7153	0.00089324	2.9195	0.0015204	4.6348	0.0024136	521.2615998196052	37.312	0.23933	37.312	37.226	37.466	0					10	7	2	0	0	0	0.20551	1	14591	14591		60.972	6.1956	1	88467			30249	9634	20742	20814	30640	30640	398				-0.017338960454253538
QASWPSSSL	9	Unmodified	_QASWPSSSL_					0	0	0			REV__nc|ENSG00000185133|Q15735-2|INPP5J	REV__nc|ENSG00000185133|Q15735-2|INPP5J	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7323303222656	2	481.732532	961.45051	0.68907	0.00033195	-0.80456	-0.00038758	-0.11549	-5.5634E-05	481.73211675138117	31.185	0.32074	31.185	31.027	31.348	0					14	7	3	0	0	0	0.098791	1	11744	11744		79.713	10.926	1	432160	+		30250	17010	20743	20815	30641	30641					-0.03175682378889633
QATAILKKK	9	Unmodified	_QATAILKKK_					0	0	0		ENST00000597828.5_1_3:181417563-181457401:+|nuORF;ENST00000600801.5_1_3:181417563-181457401:+|nuORF	ENST00000597828.5_1_3:181417563-181457401:+|nuORF	ENST00000597828.5_1_3:181417563-181457401:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.8293151855469	2	500.829309	999.644065	-0.13126	-6.5741E-05	-0.069815	-3.4965E-05	-0.20108	-0.00010071	500.8293216636687	11.573	0.22787	11.573	11.514	11.742	0					22	8	4	0	0	0	0.22837	1	2249	2249		51.335	0	1	1479800			30251	11011	20744	20816	30642	30642					0.1442289912798742
QATAILNRL	9	Unmodified	_QATAILNRL_					0	0	0			REV__nc|ENSG00000119760|O94864-2|SUPT7L	REV__nc|ENSG00000119760|O94864-2|SUPT7L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.30084228515625	2	500.300916	998.587279	1.089	0.00054482	-1.4045	-0.00070268	-0.31554	-0.00015786	500.3002871268992	14.902	0.42036	14.902	14.592	15.012	0					13	8	2	0	0	0	0.19605	1	3826	3826		62.107	14.45	1	438800	+		30252	14255	20745	20817	30643	30643					0.08792851571456595
QATAVKAILS	10	Unmodified	_QATAVKAILS_					0	0	0			REV__CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	REV__CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.3029479980469	2	501.303124	1000.5917	-0.5752	-0.00028835	-0.2187	-0.00010964	-0.7939	-0.00039799	501.30326971639977	16.105	0.26785	16.105	15.996	16.263	0					9	5	3	0	0	0	0.44601	1	4548	4548		51.193	0	1	593550	+		30253	12379	20746	20818	30644	30644					0.09142315994370165
QATDTIGEKV	10	Unmodified	_QATDTIGEKV_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.7783203125	2	531.277303	1060.54005	1.1819	0.00062791	1.7763	0.00094373	2.9582	0.0015716	531.2783766907709	16.3	0.12139	16.3	16.228	16.349	0					6	3	2	0	0	0	0.28036	1	3830	3830		69.628	0.78148	1	208060	+		30254	13129	20747	20819	30645	30645					0.01220527509826752
QATGGAAK	8	Unmodified	_QATGGAAK_					0	0	0		SPG20|p.T655Rfs*4|1|0.63|ENSG00000133104|chr13:36304402-36304402|G/-|frameshift_variant;ENSG00000133104|ENST00000438666|SPART;ENST00000475603.5_1_13:36886596-36900733:-|nuORF;ENST00000482146.1_1_13:36888157-36888547:-|nuORF	SPG20|p.T655Rfs*4|1|0.63|ENSG00000133104|chr13:36304402-36304402|G/-|frameshift_variant	SPG20|p.T655Rfs*4|1|0.63|ENSG00000133104|chr13:36304402-36304402|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.18914794921875	2	352.190303	702.366053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.381	1	15.381	14.881	15.881	0								0	0	0	1.7419	1	4041	4041		30.504	0	1				30255	3837	20748	20820	30646	30646					0.002964115949907864
QATKLILNY	9	Unmodified	_QATKLILNY_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29552193-29556516:+|nuORF;NF1|p.D946*|1|0.2|ENSG00000196712|chr17:31229444-31229445|-/T|frameshift_variant	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.3132934570312	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.417	1	38.417	37.917	38.917	0								0	0	0	0.13137	1	15071	15071		64.207	21.811	1				30256	11709	20749	20821	30647	30647					0.0785460251142922
QATKLILNY	9	Unmodified	_QATKLILNY_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29552193-29556516:+|nuORF;NF1|p.D946*|1|0.2|ENSG00000196712|chr17:31229444-31229445|-/T|frameshift_variant	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.3112182617188	2	532.310949	1062.60735	0.71993	0.00038323	1.0828	0.00057639	1.8027	0.00095961	532.3117025449039	38.344	0.24792	38.344	38.218	38.466	0					9	5	2	0	0	0	0.087861	1	15048	15048		82.241	7.9855	1	138040			30257	11709	20749	20821	30648	30648					0.0785460251142922
QATPETRHM	9	Unmodified	_QATPETRHM_					0	0	0			REV__ENST00000565932.5_1_16:28734455-28746831:+|nuORF	REV__ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7565307617188	2	535.756015	1069.49748	0.18559	9.9429E-05	1.1544	0.00061847	1.34	0.0007179	535.7565808924894	16.016	0.13815	16.016	15.926	16.064	0					8	3	3	0	0	0	0.39215	1	4265	4265		42.396	0	1	511860	+		30258	16965	20750	20822	30649	30649					-0.03449146099410427
QATPSHLSL	9	Unmodified	_QATPSHLSL_					0	0	0		ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.25616455078125	2	477.256174	952.497795	-2.8247	-0.0013481	2.3437	0.0011186	-0.48093	-0.00022953	477.25732188544646	27.409	0.17398	27.409	27.32	27.494	0					7	4	2	0	0	0	0.21263	1	8953	8953		60.118	4.6141	1	245710			30259	8435	20751	20823	30650	30650					0.019645968920940504
QATSPFLAK	9	Unmodified	_QATSPFLAK_					0	0	0			REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7701416015625	2	481.768917	961.523281	-1.3288	-0.00064018	0.82949	0.00039962	-0.49932	-0.00024056	481.769508603467	32.444	0.60582	32.444	32.139	32.745	0					64	25	4	0	0	0	0.41958	1	10735	10735		40.058	5.8856	1	481020	+		30260	12891	20752	20824	30651	30651					0.04098071414523474
QATVENPKIT	10	Unmodified	_QATVENPKIT_					0	0	0		tr|U7SFA7|U7SFA7_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02318PE=4SV=1	tr|U7SFA7|U7SFA7_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02318PE=4SV=1	tr|U7SFA7|U7SFA7_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02318PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8035888671875	2	550.800946	1099.58734	3.7274	0.002053	0.56109	0.00030905	4.2885	0.0023621	550.8014068059813	19.715	0.21781	19.715	19.607	19.825	0					9	4	3	0	0	0	0.30252	1	6158	6158		66.962	19.002	1	1913000			30261	22569	20753	20825	30652	30652					0.041528067808030755
QAVAAVHIK	9	Unmodified	_QAVAAVHIK_					0	0	0			REV__ENST00000493181.1_1_2:200812997-200820193:-|nuORF	REV__ENST00000493181.1_1_2:200812997-200820193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7845458984375	2	468.784902	935.55525	-0.68535	-0.00032128	-0.23362	-0.00010952	-0.91898	-0.0004308	468.7847424279397	20.652	0.15173	20.652	20.599	20.751	0					5	3	2	0	0	0	0.53083	1	5860	5860		29.15	1.2673	1	123270	+		30262	15848	20754	20826	30653	30653					0.08489483888320137
QAVADAVTY	9	Unmodified	_QAVADAVTY_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2345886230469	2	469.234907	936.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.732	1	34.732	34.232	35.232	0								0	0	0	0.05454	1	12964	12964		84.916	13.538	1				30263	4494	20755	20827	30654	30654					-0.01550798236155515
QAVECAAFLQ	10	Unmodified	_QAVECAAFLQ_					0	0	0		ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2671508789062	2	540.263142	1078.51173	1.928	0.0010416	2.8715	0.0015514	4.7995	0.002593	540.7652272966936	34.853	0.39478	34.853	34.731	35.126	0					24	10	3	0	0	0	0.39827	1	13060	13060		56.434	15.656	1	839990			30264	7902	20756	20828	30655	30655					-0.024384936711157934
QAVGAHRPWA	10	Unmodified	_QAVGAHRPWA_					0	0	0			REV__ENSG00000234186|ENST00000505035|C16orf82	REV__ENSG00000234186|ENST00000505035|C16orf82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7885131835938	2	546.788507	1091.56246	1.6989	0.00092893	-2.1059	-0.0011515	-0.40697	-0.00022253	546.7872251110088	32.167	0.21583	32.167	32.046	32.262	0					15	9	2	0	0	0	0.61187	1	10376	10376		32.812	11.865	1	55356	+		30265	17654	20757	20829	30656	30656					0.020342164887551917
QAVGFPSVV	9	Unmodified	_QAVGFPSVV_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2503662109375	2	452.25036	902.486168	0.67021	0.0003031	-0.27255	-0.00012326	0.39766	0.00017984	452.2501699523116	34.417	0.29022	34.417	34.334	34.624	0					14	7	2	0	0	0	0.24095	1	12830	12830		56.721	1.2168	1	463580	+		30266	16110	20758	20830	30657	30657					0.031023998687601306
QAVILDQKY	9	Unmodified	_QAVILDQKY_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.8038330078125	2	539.300581	1076.58661	1.556	0.00083915	0.83351	0.00044951	2.3895	0.0012887	539.3010584069578	33.163	0.16961	33.163	33.09	33.259	0					17	7	3	0	0	0	0.11898	1	10748	10748		75.043	23.851	1	139740			30267	3517	20759	20831	30658	30658					0.05138012131760661
QAVILDQKY	9	Unmodified	_QAVILDQKY_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.3009643554688	2	539.300581	1076.58661	0.89501	0.00048268	-0.12665	-6.8304E-05	0.76836	0.00041437	539.3008018581811	33.169	0.12051	33.169	33.104	33.225	0					8	5	2	0	0	0	0.10915	1	10769	10769		77.318	26.125	1	97719			30268	3517	20759	20831	30659	30659					0.05138012131760661
QAVILDQKY	9	Unmodified	_QAVILDQKY_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.3013916015625	2	539.300581	1076.58661	1.9872	0.0010717	-0.26369	-0.00014221	1.7236	0.00092952	539.3001444865907	33.418	0.29282	33.418	33.3	33.592	0					23	7	4	0	0	0	0.0076184	1	12348	12348		146.79	50.595	1	1283300			30269	3517	20759	20831	30660	30660					0.05138012131760661
QAVILDQKY	9	Unmodified	_QAVILDQKY_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.30078125	2	539.300581	1076.58661	0.25243	0.00013614	0.9437	0.00050894	1.1961	0.00064508	539.3009433500322	33.413	0.21092	33.413	33.327	33.538	0					15	5	4	0	0	0	0.04067	1	12356	12356		98.582	26.705	1	641720			30270	3517	20759	20831	30661	30661					0.05138012131760661
QAVILDQKY	9	Unmodified	_QAVILDQKY_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3005981445312	2	539.300581	1076.58661	-0.12543	-6.7647E-05	0.66178	0.0003569	0.53635	0.00028925	539.3009907553096	33.235	0.34928	33.235	33.117	33.466	0					37	14	4	0	0	0	0.026538	1	11117	11117		112.41	13.036	1	946760			30271	3517	20759	20831	30662	30662					0.05138012131760661
QAVILDQKY	9	Unmodified	_QAVILDQKY_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3012084960938	2	539.300581	1076.58661	1.9455	0.0010492	-1.2727	-0.00068637	0.67284	0.00036287	539.2998361898855	33.394	0.32151	33.394	33.296	33.618	0					23	7	5	0	0	0	0.0011548	1	12770	12770		181.41	42.582	1	5357300			30272	3517	20759	20831	30663	30663					0.05138012131760661
QAVILDQKY	9	Unmodified	_QAVILDQKY_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.3011474609375	2	539.300581	1076.58661	1.0169	0.00054841	-0.31133	-0.0001679	0.70557	0.00038051	539.3002945741272	33.184	0.27061	33.184	33.09	33.361	0					21	8	4	0	0	0	0.0059092	1	11612	11612		154.12	46.031	1	662200			30273	3517	20759	20831	30664	30664					0.05138012131760661
QAVLLVAGL	9	Unmodified	_QAVLLVAGL_					0	0	0			REV__ENSG00000002587|ENST00000002596|HS3ST1	REV__ENSG00000002587|ENST00000002596|HS3ST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2843933105469	2	442.284203	882.553853	-0.51481	-0.00022769	0.17053	7.5422E-05	-0.34428	-0.00015227	442.28424551092894	37.861	0.49054	37.861	37.565	38.055	0					18	10	2	0	0	0	0.41354	1	14915	14915		40.573	1.7665	1	107650	+		30274	12815	20760	20832	30665	30665					0.10787849799555715
QAVQATAQM	9	Unmodified	_QAVQATAQM_					0	0	0		ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.23455810546875	2	474.234384	946.454216	0.67556	0.00032037	-1.245	-0.00059042	-0.56945	-0.00027005	474.2337429856687	27.188	0.13982	27.188	27.097	27.237	0					5	3	2	0	0	0	0.095583	1	9459	9459		80.455	24.95	1	116460			30275	1472	20761	20833	30666	30666					-0.02115335876703739
QAVQATAQM	9	Unmodified	_QAVQATAQM_					0	0	0		ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2347717285156	2	474.234384	946.454216	-0.12108	-5.742E-05	0.71259	0.00033793	0.59151	0.00028052	474.2347507591646	27.178	0.21556	27.178	27.072	27.287	0					6	4	2	0	0	0	0.054723	1	9807	9807		93.598	44.062	1	172080			30276	1472	20761	20833	30667	30667					-0.02115335876703739
QAVQDNPAM	9	Unmodified	_QAVQDNPAM_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-4|CASP1;CARD17-CASP1|3|fusion;nc|ENSG00000137752|P29466-3|CASP1;CARD17-CASP1|4|fusion;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENST00000528424.1_1_11:104901858-104905058:-|nuORF;CASP1|p.P124S|1|0.4|ENSG00000137752|chr11:105031248-105031248|G/A|missense_variant	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2236328125	2	487.224017	972.43348	-0.083544	-4.0705E-05	-0.64546	-0.00031448	-0.729	-0.00035519	487.2239812162898	26.887	0.21619	26.887	26.778	26.994	0					9	4	3	0	0	0	0.25716	1	9686	9686		54.776	15.755	1	274350			30277	373	20762	20834	30668	30668					-0.05383926256365612
QAVRTQAQD	9	Unmodified	_QAVRTQAQD_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7624816894531	2	508.759612	1015.50467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.953	1	21.953	21.453	22.453	0								0	0	0	0.091069	1	6131	6131		74.255	1.3758	1				30278	11778	20763	20835	30669	30669					-0.002460902273469401
QAYSGIQQY	9	Unmodified	_QAYSGIQQY_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;CELF2|p.A423Gfs*31|1|0.4|ENSG00000048740|chr10:11325842-11325843|-/G|frameshift_variant;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.75439453125	2	529.251089	1056.48762	1.1775	0.00062321	-0.021292	-1.1269E-05	1.1562	0.00061194	529.7530014066	33.995	0.067345	33.995	33.953	34.02	0					4	2	2	0	0	0	0.22837	1	11099	11099		58.23	1.5089	1	43457			30279	4866;1233	20764	20836	30670	30670					-0.038360108331289666
QAYSGIQQY	9	Unmodified	_QAYSGIQQY_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;CELF2|p.A423Gfs*31|1|0.4|ENSG00000048740|chr10:11325842-11325843|-/G|frameshift_variant;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.25244140625	2	529.251089	1056.48762	2.283	0.0012083	-1.7378	-0.00091975	0.5452	0.00028855	529.2502161209836	34.242	0.23988	34.242	34.105	34.345	0					10	6	2	0	0	0	0.10915	1	12726	12726		77.318	3.3428	1	157680			30280	4866;1233	20764	20836	30671	30671					-0.038360108331289666
QAYSGIQQY	9	Unmodified	_QAYSGIQQY_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;CELF2|p.A423Gfs*31|1|0.4|ENSG00000048740|chr10:11325842-11325843|-/G|frameshift_variant;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2515869140625	2	529.251089	1056.48762	0.89771	0.00047511	0.1391	7.3619E-05	1.0368	0.00054873	529.2512373552786	34.247	0.21225	34.247	34.146	34.358	0					8	5	2	0	0	0	0.07136	1	13191	13191		87.696	5.4559	1	98630			30281	4866;1233	20764	20836	30672	30672					-0.038360108331289666
QAYSGIQQY	9	Unmodified	_QAYSGIQQY_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;CELF2|p.A423Gfs*31|1|0.4|ENSG00000048740|chr10:11325842-11325843|-/G|frameshift_variant;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2510986328125	2	529.251089	1056.48762	0.73177	0.00038729	-0.36956	-0.00019559	0.36221	0.0001917	529.251015306615	34.207	0.35815	34.207	34.101	34.46	0					12	7	3	0	0	0	0.1424	1	13098	13098		69.628	20.186	1	207280			30282	4866;1233	20764	20836	30673	30673					-0.038360108331289666
QCAATSMSLCK	11	Unmodified	_QCAATSMSLCK_					0	0	0			REV__ENST00000558265.5_2_14:103800742-103802258:+|nuORF	REV__ENST00000558265.5_2_14:103800742-103802258:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	381.5033874511719	3	381.504938	1141.49299	-2.1514	-0.00082079	-1.8349	-0.00070002	-3.9863	-0.0015208	381.50442230876183	29.498	0.24969	29.498	29.405	29.655	0					11	6	3	0	0	0	0.36165	1	9917	9917		55.721	2.6321	1	274430	+		30283	20267	20765	20837	30674	30674					-0.0721011462885599
QCAQHLGQIQ	10	Unmodified	_QCAQHLGQIQ_					0	0	0			REV__ENSG00000172878|ENST00000315796|METAP1D	REV__ENSG00000172878|ENST00000315796|METAP1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.22021484375	2	563.277115	1124.53968	0.087563	4.9322E-05	3.3143	0.0018669	3.4018	0.0019162	563.2779813568095	16.105	0.11689	16.105	15.996	16.112	0					4	2	2	0	0	0	0.60076	1	4529	4529		34.173	0.25091	1	47460	+		30284	16479	20766	20838	30675	30675					-0.017611706910429348
QCCRWVNEG	9	Unmodified	_QCCRWVNEG_					0	0	0			REV__nc|ENSG00000141750|Q6ZMT1-2|STAC2	REV__nc|ENSG00000141750|Q6ZMT1-2|STAC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.728759765625	2	547.728943	1093.44333	0.42551	0.00023306	0.6188	0.00033893	1.0443	0.000572	547.7292756400045	17.301	0.17183	17.301	17.247	17.418	0					14	6	3	0	0	0	0.0792	1	4306	4306		84.916	17.422	1	376380	+		30285	15132	20767	20839	30676	30676					-0.09965061522621
QCCRWVNEG	9	Unmodified	_QCCRWVNEG_					0	0	0			REV__nc|ENSG00000141750|Q6ZMT1-2|STAC2	REV__nc|ENSG00000141750|Q6ZMT1-2|STAC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7290649414062	2	547.728943	1093.44333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.847	1	18.847	18.347	19.347	0								0	0	0	0.13522	1	5857	5857		63.306	1.1989	1		+		30286	15132	20767	20839	30677	30677					-0.09965061522621
QCDFWGLKT	9	Carbamidomethyl (C)	_QC(Carbamidomethyl (C))DFWGLKT_	QC(1)DFWGLKT		QC(72)DFWGLKT		0	1	0			REV__ENSG00000130227|ENST00000252512|XPO7	REV__ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.7670288085938	2	577.768591	1153.52263	-0.06475	-3.7411E-05	-0.78373	-0.00045282	-0.84848	-0.00049023	577.7670017555126	15.734	0.20915	15.734	15.646	15.856	0					12	5	4	0	0	0	0.13267	1	4134	4134		71.877	8.3436	1	2794900	+		30287	14569	20768	20840	30678	30678	541				-0.04799091296831648
QCFLKLDP	8	Unmodified	_QCFLKLDP_					0	0	0		USP44|p.L306P|1|0.37|ENSG00000136014|chr12:95533340-95533340|A/G|missense_variant	USP44|p.L306P|1|0.37|ENSG00000136014|chr12:95533340-95533340|A/G|missense_variant	USP44|p.L306P|1|0.37|ENSG00000136014|chr12:95533340-95533340|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.25213623046875	2	482.252046	962.489538	-2.9218	-0.001409	1.5754	0.00075973	-1.3464	-0.0006493	482.2525608454068	24.152	0.19757	24.152	24.023	24.22	0					12	4	4	0	0	0	0.64144	1	7507	7507		42.396	4.5846	1	149440			30288	23099	20769	20841	30679	30679					0.006793266510953799
QCFTRPLK	8	Unmodified	_QCFTRPLK_					0	0	0			REV__ENST00000598182.5_1_19:3980752-3982305:-|nuORF	REV__ENST00000598182.5_1_19:3980752-3982305:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.77197265625	2	496.770937	991.527321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.686	1	15.686	15.186	16.186	0								0	0	0	1.7419	1	4103	4103		71.296	7.9894	1		+		30289	16203	20770	20842	30680	30680					0.031218376365814038
QCHFQPLL	8	Unmodified	_QCHFQPLL_					0	0	0		USP53|p.R338Q|1|0.4|ENSG00000145390|chr4:119267360-119267360|G/A|missense_variant	USP53|p.R338Q|1|0.4|ENSG00000145390|chr4:119267360-119267360|G/A|missense_variant	USP53|p.R338Q|1|0.4|ENSG00000145390|chr4:119267360-119267360|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.25152587890625	2	493.249837	984.485122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.167	1	31.167	30.667	31.667	0								0	0	0	1.7419	1	9998	9998		26.796	1.222	1				30290	23100	20771	20843	30681	30681					-0.007741377717934483
QCIGAQHKWI	10	Unmodified	_QCIGAQHKWI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.30712890625	2	592.305675	1182.5968	1.526	0.00090384	0.73779	0.000437	2.2638	0.0013408	592.3061237005442	17.896	0.16843	17.896	17.836	18.005	0					10	3	4	0	0	0	0.44469	1	5409	5409		51.335	51.335	1	2116800			30291	2754	20772	20844	30682	30682					0.012802965853325077
QCIGGRLFTK	10	Unmodified	_QCIGGRLFTK_					0	0	0			REV__ENST00000414876.5_1_2:231850605-231851715:-|nuORF	REV__ENST00000414876.5_1_2:231850605-231851715:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.8095703125	2	561.808051	1121.60155	1.8406	0.0010341	0.86305	0.00048487	2.7036	0.0015189	561.8085282690641	15.425	0.21183	15.425	15.322	15.534	0					12	4	4	0	0	0	0.26198	1	4203	4203		71.877	0	1	2660300	+		30292	19024	20773	20845	30683	30683					0.0456118072809204
QCISKNWVC	9	Unmodified	_QCISKNWVC_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7545776367188	2	540.751887	1079.48922	3.5029	0.0018942	1.2409	0.00067104	4.7438	0.0025652	540.752342172099	12.411	0.33894	12.411	12.232	12.571	0					21	10	3	0	0	0	0.61124	1	2613	2613		17.365	0.89182	1	113190			30293	1660	20774	20846	30684	30684					-0.04734416340397729
QCKRASLA	8	Unmodified	_QCKRASLA_					0	0	0			REV__ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	REV__ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.73956298828125	2	438.739637	875.464721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.563	1	14.563	14.063	15.063	0								0	0	0	1.7419	1	3175	3175		50.025	4.0523	1		+		30294	12210	20775	20847	30685	30685					0.022006915683846273
QCKRASLA	8	Unmodified	_QCKRASLA_					0	0	0			REV__ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	REV__ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.73944091796875	2	438.739637	875.464721	2.6565	0.0011655	-3.94	-0.0017286	-1.2835	-0.00056314	438.7382743664266	14.751	0.16657	14.751	14.677	14.844	0					7	3	3	0	0	0	0.54629	1	3772	3772		55.504	9.5523	1	388680	+		30295	12210	20775	20847	30686	30686					0.022006915683846273
QCLTSSTAALS	11	Unmodified	_QCLTSSTAALS_					0	0	0		SLC35D3|p.R368Efs*18|1|0.25|ENSG00000182747|chr6:136924543-136924543|C/-|frameshift_variant;ENSG00000182747|ENST00000331858|SLC35D3	SLC35D3|p.R368Efs*18|1|0.25|ENSG00000182747|chr6:136924543-136924543|C/-|frameshift_variant	SLC35D3|p.R368Efs*18|1|0.25|ENSG00000182747|chr6:136924543-136924543|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.26416015625	2	541.263339	1080.51212	0.31172	0.00016872	0.91277	0.00049405	1.2245	0.00066277	541.2638826462282	11.535	0.15651	11.535	11.453	11.61	0					8	4	3	0	0	0	0.69524	1	2377	2377		28.081	1.3886	1	168140			30296	6918	20776	20848	30687	30687					-0.024911187419320413
QCRCQYNHSEK	11	Unmodified	_QCRCQYNHSEK_					0	0	0			REV__ENSG00000062370|ENST00000354340|ZNF112	REV__ENSG00000062370|ENST00000354340|ZNF112	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	698.2974853515625	2	698.298252	1394.58195	0.24373	0.00017019	-1.1156	-0.00077901	-0.87186	-0.00060882	698.2972221658753	19.898	0.24256	19.898	19.727	19.97	0					10	7	2	0	0	0	0.69524	1	5241	5241		28.081	0	1	135440	+		30297	13090	20777	20849	30688	30688					-0.0995556334498815
QCRKQLGL	8	Carbamidomethyl (C)	_QC(Carbamidomethyl (C))RKQLGL_	QC(1)RKQLGL		QC(63)RKQLGL		0	1	0		nc|ENSG00000157214|Q8NFT2-3|STEAP2;nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2	nc|ENSG00000157214|Q8NFT2-3|STEAP2	nc|ENSG00000157214|Q8NFT2-3|STEAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.78118896484375	2	501.779293	1001.54403	0.69339	0.00034793	2.5964	0.0013028	3.2898	0.0016508	501.7806141336257	19.711	0.13382	19.711	19.661	19.795	0					9	3	4	0	0	0	0.4723	1	6006	6006		62.978	62.978	1	1138400			30298	5204	20778	20850	30689	30689	211				0.043323385225448874
QCSKYSILQ	9	Unmodified	_QCSKYSILQ_					0	0	0		ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2711791992188	2	535.270967	1068.52738	-1.3629	-0.00072952	2.6444	0.0014155	1.2815	0.00068594	535.2722810423343	31.268	0.18506	31.268	31.157	31.342	0					14	5	3	0	0	0	0.12278	1	10732	10732		74.165	0	1	128930			30299	10343	20779	20851	30690	30690					-0.004142071540627512
QCSSKNYCL	9	Unmodified	_QCSSKNYCL_					0	0	0			REV__ENST00000420027.3_1_20:48699081-48699147:-|nuORF	REV__ENST00000420027.3_1_20:48699081-48699147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2280883789062	2	523.225702	1044.43685	0.76565	0.00040061	3.2449	0.0016978	4.0105	0.0020984	523.2277780791677	16.455	0.14541	16.455	16.358	16.503	0					11	5	3	0	0	0	0.54267	1	3761	3761		27.882	0	1	175250	+		30300	19067	20780	20852	30691	30691					-0.08358999474012307
QCVCHPKGQ	9	Unmodified	_QCVCHPKGQ_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7322692871094	2	500.228579	998.442605	1.09	0.00054525	0.42633	0.00021326	1.5163	0.00075851	500.22821924654454	22.634	0.91441	22.634	22.421	23.335	0					59	18	4	0	0	0	0.35045	1	7687	7687		45.952	3.5558	1	7081800	+		30301	15512	20781	20853	30692	30692					-0.056678561716694276
QCVSPYVF	8	Unmodified	_QCVSPYVF_					0	0	0			REV__ENSG00000188868|ENST00000293725|ZNF563	REV__ENSG00000188868|ENST00000293725|ZNF563	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7217102050781	2	471.723121	941.431689	-0.39928	-0.00018835	-2.4818	-0.0011707	-2.8811	-0.0013591	471.7220052211076	32.891	0.21582	32.891	32.773	32.989	0					13	8	2	0	0	0	0.76283	1	10645	10645		25.45	4.9683	1	41442	+		30302	17197	20782	20854	30693	30693					-0.041369352743117815
QDAKMAGIGI	10	Unmodified	_QDAKMAGIGI_					0	0	0		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.26605224609375	2	502.265684	1002.51682	-0.044678	-2.244E-05	0.072145	3.6236E-05	0.027467	1.3796E-05	502.2657387135393	29.89	0.18782	29.89	29.792	29.98	0					15	7	3	0	0	0	0.2978	1	9463	9463		67.494	7.3754	1	173980		+	30303	641	20783	20855	30694	30694					0.015658101914937106
QDAKMAGIGI	10	Unmodified	_QDAKMAGIGI_					0	0	0		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2654724121094	2	502.265684	1002.51682	-0.073049	-3.669E-05	-0.57194	-0.00028727	-0.64499	-0.00032396	502.2655102046963	30.18	0.56485	30.18	29.961	30.526	0					28	14	3	0	0	0	0.38194	1	10853	10853		58.23	1.7961	1	990640		+	30304	641	20783	20855	30695	30695					0.015658101914937106
QDAKMAGIGI	10	Unmodified	_QDAKMAGIGI_					0	0	0		CON__P19012	CON__P19012	CON__P19012	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.265625	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.937	1	29.937	29.437	30.437	0								0	0	0	0.17308	1	9787	9787		67.494	0	1			+	30305	641	20783	20855	30696	30696					0.015658101914937106
QDAKMAGIGI	10	Unmodified	_QDAKMAGIGI_					0	0	0		CON__P19012	CON__P19012	CON__P19012	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2660827636719	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.202	1	30.202	29.702	30.702	0								0	0	0	0.11266	1	11264	11264		77.318	2.2743	1			+	30306	641	20783	20855	30697	30697					0.015658101914937106
QDAKMAGIGI	10	Unmodified	_QDAKMAGIGI_					0	0	0		CON__P19012	CON__P19012	CON__P19012	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2659606933594	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.157	1	30.157	29.657	30.657	0								0	0	0	0.17308	1	11131	11131		67.494	2.0283	1			+	30307	641	20783	20855	30698	30698					0.015658101914937106
QDAKMAGIGI	10	Unmodified	_QDAKMAGIGI_					0	0	0		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2655334472656	2	502.265684	1002.51682	2.9272	0.0014702	-1.9043	-0.00095645	1.0229	0.00051377	502.26431604068597	30.103	0.80078	30.103	29.862	30.663	0					51	16	5	0	0	0	0.14426	1	11103	11103		87.696	2.5356	1	2942300		+	30308	641	20783	20855	30699	30699					0.015658101914937106
QDAYDISQLR	10	Unmodified	_QDAYDISQLR_					0	0	0		ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.799072265625	2	604.798934	1207.58332	-0.59891	-0.00036222	0.11656	7.0496E-05	-0.48235	-0.00029172	604.7990125264595	30.986	0.14168	30.986	30.923	31.065	0					9	5	2	0	0	0	0.69544	1	10233	10233		22.58	1.6327	1	102870			30309	3610	20784	20856	30700	30700					-0.012172827129234065
QDCKSLADPGS	11	Unmodified	_QDCKSLADPGS_					0	0	0		PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;ENSG00000129292|ENST00000395386|PHF20L1;ENST00000477051.1_1_8:133854703-133858165:+|nuORF	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.750244140625	2	560.750595	1119.48664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.247	1	39.247	38.747	39.747	0								0	0	0	0.32997	1	13201	13201		47.96	1.5027	1				30310	3590	20785	20857	30701	30701					-0.06832593264357456
QDCNARTSGP	10	Unmodified	_QDCNARTSGP_					0	0	0		ENST00000421890.5_1_7:5862812-5870841:+|nuORF	ENST00000421890.5_1_7:5862812-5870841:+|nuORF	ENST00000421890.5_1_7:5862812-5870841:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.730224609375	2	524.727455	1047.44036	3.4361	0.001803	1.9576	0.0010272	5.3938	0.0028303	524.7283300372172	15.138	0.16733	15.138	15.079	15.246	0					8	3	3	0	0	0	0.54197	1	3940	3940		40.778	0	1	847220			30311	9405	20786	20858	30702	30702					-0.0814661337576581
QDEEDRIE	8	Unmodified	_QDEEDRIE_					0	0	0		nc|ENSG00000164691|Q8N103-4|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP	nc|ENSG00000164691|Q8N103-4|TAGAP	nc|ENSG00000164691|Q8N103-4|TAGAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7939453125	2	517.225268	1032.43598	3.3182	0.0017163	3.6468	0.0018862	6.965	0.0036025	517.7294067082594	11.885	0.1705	11.885	11.797	11.967	0					8	5	2	0	0	0	0.29286	1	2361	2361		84.916	5.4645	1	915030			30312	5719	20787	20859	30703	30703					-0.07893799317707817
QDEKPLKY	8	Unmodified	_QDEKPLKY_					0	0	0		ENSG00000189134|ENST00000343684|NKAPL;NKAPL|p.A299V|1|0.24|ENSG00000189134|chr6:28260267-28260267|C/T|missense_variant	ENSG00000189134|ENST00000343684|NKAPL	ENSG00000189134|ENST00000343684|NKAPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7722473144531	2	510.771657	1019.52876	0.97867	0.00049988	-0.053296	-2.7222E-05	0.92538	0.00047266	510.7719056074268	42.831	0.23035	42.831	42.694	42.924	0					14	11	2	0	0	0	0.43813	1	16209	16209		66.429	5.4573	1	93390			30313	7303	20788	20860	30704	30704					0.01977750206322071
QDELLYAR	8	Unmodified	_QDELLYAR_					0	0	0		ENSG00000186648|ENST00000342740|CARMIL3;nc|ENSG00000186648|Q8ND23-3|CARMIL3;ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.26202392578125	2	504.261456	1006.50836	0.6603	0.00033296	-1.3254	-0.00066834	-0.66508	-0.00033538	504.2619645988438	25.263	0.41689	25.263	25.152	25.568	0					31	14	4	0	0	0	0.30066	1	7593	7593		93.195	13.744	1	226630			30314	7154	20789	20861	30705	30705					0.005365795465081646
QDELLYAR	8	Unmodified	_QDELLYAR_					0	0	0		ENSG00000186648|ENST00000342740|CARMIL3;nc|ENSG00000186648|Q8ND23-3|CARMIL3;ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2604675292969	2	504.261456	1006.50836	0.77939	0.00039302	-2.291	-0.0011553	-1.5116	-0.00076223	504.2613054415473	25.575	0.51166	25.575	25.374	25.886	0					42	10	5	0	0	0	0.33804	1	8753	8753		87.696	8.2454	1	1797900			30315	7154	20789	20861	30706	30706					0.005365795465081646
QDELLYAR	8	Unmodified	_QDELLYAR_					0	0	0		ENSG00000186648|ENST00000342740|CARMIL3;nc|ENSG00000186648|Q8ND23-3|CARMIL3;ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2601013183594	2	504.261456	1006.50836	-0.37144	-0.0001873	-1.8995	-0.00095787	-2.271	-0.0011452	504.26094474813505	25.478	0.60185	25.478	25.264	25.866	0					35	10	5	0	0	0	0.51914	1	8933	8933		56.434	0	1	1371300			30316	7154	20789	20861	30707	30707					0.005365795465081646
QDELSPNRK	9	Unmodified	_QDELSPNRK_					0	0	0			REV__ENST00000492682.5_1_1:117640837-117644143:+|nuORF	REV__ENST00000492682.5_1_1:117640837-117644143:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7782592773438	2	543.780544	1085.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.93	1	44.93	44.43	45.43	0								0	0	0	0.27025	1	17999	17999		40.778	10.275	1		+		30317	19732	20790	20862	30708	30708					0.0071846546118194965
QDESVLLIA	9	Unmodified	_QDESVLLIA_					0	0	0			REV__nc|ENSG00000111801|O00478-2|BTN3A3	REV__nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7740783691406	2	494.27149	986.528426	-1.269	-0.00062723	1.2186	0.00060231	-0.050421	-2.4922E-05	494.2719464130265	30.711	0.4001	30.711	30.588	30.988	0					28	14	3	0	0	0	0.47428	1	10175	10175		35.201	7.3185	1	293290	+		30318	13981	20791	20863	30709	30709					0.03462330486479459
QDEVLQANI	9	Unmodified	_QDEVLQANI_					0	0	0			REV__nc|ENSG00000100280|Q10567-4|AP1B1	REV__nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2664794921875	2	515.264196	1028.51384	3.2432	0.0016711	1.1498	0.00059243	4.393	0.0022635	515.2647143867084	45.544	0.17776	45.544	45.468	45.646	0					13	6	3	0	0	0	0.30951	1	18255	18255		49.442	1.7842	1	95949	+		30319	13531	20792	20864	30710	30710					0.0007225833833217621
QDFGGGGGA	9	Unmodified	_QDFGGGGGA_					0	0	0		ENST00000306336.5_2_2:85835425-85835605:-|nuORF	ENST00000306336.5_2_2:85835425-85835605:-|nuORF	ENST00000306336.5_2_2:85835425-85835605:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.16180419921875	2	383.161742	764.308932	0.092271	3.5355E-05	0.1261	4.8318E-05	0.21837	8.3673E-05	383.16189779821815	14.605	0.25477	14.605	14.522	14.777	0					9	6	2	0	0	0	0.53083	1	3606	3606		29.15	29.15	1	187370			30320	8520	20793	20865	30711	30711					-0.08265055681363265
QDFRAAAARG	10	Unmodified	_QDFRAAAARG_					0	0	0		ENST00000508198.5_1_4:152330433-152375872:+|nuORF	ENST00000508198.5_1_4:152330433-152375872:+|nuORF	ENST00000508198.5_1_4:152330433-152375872:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7809448242188	2	531.775597	1061.53664	3.4185	0.0018179	3.7129	0.0019745	7.1314	0.0037923	531.7780807658204	13.1	0.20712	13.1	13.035	13.242	0					6	4	2	0	0	0	0.44292	1	2960	2960		56.721	7.2795	1	1244800			30321	10209	20794	20866	30712	30712					0.00833322246444368
QDGKLNNQV	9	Unmodified	_QDGKLNNQV_					0	0	0			REV__ENSG00000177694|ENST00000454872|NAALADL2	REV__ENSG00000177694|ENST00000454872|NAALADL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2621154785156	2	508.261988	1014.50942	-0.025549	-1.2986E-05	0.66779	0.00033941	0.64224	0.00032643	508.2624419544061	13.224	1.0669	13.224	12.994	14.061	0					90	28	6	0	0	0	0.41958	1	3311	3311		32.812	0	1	52616000	+		30322	16707	20795	20867	30713	30713					0.0027479391542328813
QDGPEKKKR	9	Unmodified	_QDGPEKKKR_					0	0	0			REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.3069458007812	2	543.306729	1084.59891	0.33665	0.00018291	0.22543	0.00012248	0.56208	0.00030538	543.3066933002599	15.392	0.47983	15.392	15.01	15.49	0					26	11	4	0	0	0	0.13726	1	3941	3941		70.816	7.2824	1	883640	+		30323	12455	20796	20868	30714	30714					0.059990485947992056
QDGPEKKKR	9	Unmodified	_QDGPEKKKR_					0	0	0			REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.3070068359375	2	543.306729	1084.59891	2.014	0.0010942	-1.4369	-0.0007807	0.57708	0.00031353	543.3058901874116	15.377	0.45616	15.377	15.028	15.484	0					30	9	4	0	0	0	0.11898	1	4138	4138		75.043	12.936	1	1407400	+		30324	12455	20796	20868	30715	30715					0.059990485947992056
QDGSEQTRSI	10	Unmodified	_QDGSEQTRSI_					0	0	0			REV__ENSG00000159166|ENST00000391967|LAD1	REV__ENSG00000159166|ENST00000391967|LAD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7670288085938	2	560.765091	1119.51563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.193	1	44.193	43.693	44.693	0								0	0	0	0.38475	1	17227	17227		35.152	0.97948	1		+		30325	15704	20797	20869	30716	30716					-0.03934732643733696
QDHHYPNST	9	Unmodified	_QDHHYPNST_					0	0	0			REV__CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	REV__CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7335815429688	2	549.733594	1097.45264	0.52805	0.00029029	0.23076	0.00012686	0.75881	0.00041714	549.733701263877	33.256	0.72735	33.256	32.932	33.659	0					34	19	2	0	0	0	0.47473	1	12292	12292		35.152	3.6222	1	159910	+		30326	12409	20798	20870	30717	30717					-0.09219253641094838
QDIAHNVEN	9	Unmodified	_QDIAHNVEN_					0	0	0			REV__LRRC1|p.R519Q|1|0.5|ENSG00000137269|chr6:53922774-53922774|G/A|missense_variant	REV__LRRC1|p.R519Q|1|0.5|ENSG00000137269|chr6:53922774-53922774|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2424926757812	2	520.243795	1038.47304	-1.3525	-0.00070361	-1.2888	-0.00067051	-2.6413	-0.0013741	520.243662702321	31.039	0.095858	31.039	30.974	31.07	0					4	2	2	0	0	0	0.50858	1	10647	10647		31.53	4.4825	1	27954	+		30327	20845	20799	20871	30718	30718					-0.044660829812755765
QDIEEYLKKK	10	Unmodified	_QDIEEYLKKK_					0	0	0			REV__ENSG00000148795|ENST00000369887|CYP17A1	REV__ENSG00000148795|ENST00000369887|CYP17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	647.3560180664062	2	647.356085	1292.69762	0.3711	0.00024023	-0.073951	-4.7873E-05	0.29715	0.00019236	647.3558305187122	32.901	0.24297	32.901	32.814	33.057	0					14	6	3	0	0	0	0.4947	1	12110	12110		49.536	13.089	1	628220	+		30328	15396	20800	20872	30719	30719					0.06297607049145881
QDIFGEDCVSV	11	Unmodified	_QDIFGEDCVSV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	606.2679443359375	2	606.266078	1210.5176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.125	1	19.125	18.625	19.625	0								0	0	0	0.39826	1	5132	5132		37.508	0.34906	1				30329	3101	20801	20873	30720	30720					-0.07923439950150168
QDIFVKLE	8	Unmodified	_QDIFVKLE_					0	0	0			REV__TFDP1|p.A10T|1|0.04|ENSG00000198176|chr13:113611011-113611011|G/A|missense_variant	REV__TFDP1|p.A10T|1|0.04|ENSG00000198176|chr13:113611011-113611011|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2753601074219	2	496.276575	990.538597	0.12612	6.2593E-05	-3.7511	-0.0018616	-3.6249	-0.001799	496.2747801517404	13.9	0.087349	13.9	13.853	13.94	0					6	4	2	0	0	0	0.41701	1	2860	2860		68.787	0	1	56067	+		30330	17385	20802	20874	30721	30721					0.04294938211705812
QDILKDPTR	9	Unmodified	_QDILKDPTR_					0	0	0			REV__ENSG00000047578|ENST00000261588|KATNIP	REV__ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3017578125	2	543.301113	1084.58767	0.61113	0.00033203	0.75235	0.00040875	1.3635	0.00074078	543.3015811987066	17.691	0.17033	17.691	17.58	17.751	0					6	3	2	0	0	0	0.22837	1	5162	5162		58.23	1.7961	1	201370	+		30331	13011	20803	20875	30722	30722					0.04876226500641678
QDIQNKLDEV	10	Unmodified	_QDIQNKLDEV_					0	0	0		ENSG00000186648|ENST00000342740|CARMIL3;ENST00000559694.5_1_14:24530705-24534560:+|nuORF	ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.3062133789062	2	601.306592	1200.59863	-0.22588	-0.00013582	-1.3296	-0.0007995	-1.5555	-0.00093532	601.3059574286883	31.857	0.29541	31.857	31.764	32.059	0					15	7	3	0	0	0	0.44971	1	11645	11645		54.722	1.6334	1	228360			30332	7154	20804	20876	30723	30723					0.006355840842843463
QDISWHIK	8	Unmodified	_QDISWHIK_					0	0	0		ENST00000358015.7_1_9:110093006-110093297:+|nuORF	ENST00000358015.7_1_9:110093006-110093297:+|nuORF	ENST00000358015.7_1_9:110093006-110093297:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7717895507812	2	513.771991	1025.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.086	1	36.086	35.586	36.586	0								0	0	0	1.7419	1	13992	13992		82.241	7.9855	1				30333	8826	20805	20877	30724	30724					0.01768589646030705
QDKFQTMSD	9	Unmodified	_QDKFQTMSD_					0	0	0		ENSG00000230989|ENST00000433866|HSBP1	ENSG00000230989|ENST00000433866|HSBP1	ENSG00000230989|ENST00000433866|HSBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2412109375	2	550.239864	1098.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.962	1	24.962	24.462	25.462	0								0	0	0	0.37233	1	8801	8801		19.104	0.77911	1				30334	7890	20806	20878	30725	30725					-0.0801197829305238
QDKIHTLTR	9	Unmodified	_QDKIHTLTR_					0	0	0			REV__nc|ENSG00000204516|Q29980-2|MICB	REV__nc|ENSG00000204516|Q29980-2|MICB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.3147583007812	2	556.314554	1110.61456	-0.99091	-0.00055126	1.4568	0.00081043	0.46586	0.00025917	556.3155234806318	16.191	0.1129	16.191	16.115	16.228	0					5	3	2	0	0	0	0.22837	1	3774	3774		58.23	1.5977	1	112110	+		30335	17489	20807	20879	30726	30726					0.06367335111826833
QDKRQSLR	8	Unmodified	_QDKRQSLR_					0	0	0			REV__ENST00000484346.1_1_7:131189072-131190857:-|nuORF	REV__ENST00000484346.1_1_7:131189072-131190857:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.78955078125	2	515.791247	1029.56794	1.4421	0.00074382	0.99678	0.00051413	2.4389	0.0012579	515.791766705032	33.688	0.5764	33.688	33.388	33.964	0					37	14	4	0	0	0	0.61925	1	12848	12848		45.972	8.1607	1	4772500	+		30336	14516	20808	20880	30727	30727					0.05433895280543766
QDKTGSFQI	9	Unmodified	_QDKTGSFQI_					0	0	0		ZNF354A|p.K139T|1|0.32|ENSG00000169131|chr5:178713462-178713462|T/G|missense_variant	ZNF354A|p.K139T|1|0.32|ENSG00000169131|chr5:178713462-178713462|T/G|missense_variant	ZNF354A|p.K139T|1|0.32|ENSG00000169131|chr5:178713462-178713462|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.26171875	2	512.258914	1022.50327	4.211	0.0021571	-0.46789	-0.00023968	3.7432	0.0019175	512.2587821819591	14.806	0.1848	14.806	14.734	14.919	0					17	8	3	0	0	0	0.22377	1	3256	3256		58.782	2.0609	1	275740			30337	23151	20809	20881	30728	30728					-0.0070772431608929764
QDKVLDIEKR	10	Unmodified	_QDKVLDIEKR_					0	0	0		ENST00000492613.1_1_1:93091344-93142738:-|nuORF;nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5	ENST00000492613.1_1_1:93091344-93142738:-|nuORF	ENST00000492613.1_1_1:93091344-93142738:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.3538818359375	2	622.353877	1242.6932	0.11382	7.0838E-05	-0.050112	-3.1187E-05	0.063711	3.9651E-05	622.353893068799	30.538	0.74237	30.538	30.432	31.174	0					50	16	6	0	0	0	0.36432	1	11581	11581		56.434	0	1	16101000			30338	1404	20810	20882	30729	30729					0.08156142626262408
QDKVRLNK	8	Unmodified	_QDKVRLNK_					0	0	0			REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7981262207031	2	500.79854	999.582528	0.020694	1.0364E-05	-0.71253	-0.00035683	-0.69183	-0.00034647	500.7981573471577	20.037	0.11822	20.037	19.927	20.045	0					6	2	3	0	0	0	0.4001	1	6421	6421		69.628	0	1	391880	+		30339	14377	20811	20883	30730	30730					0.08271967428709104
QDKVRLNK	8	Unmodified	_QDKVRLNK_					0	0	0			REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7983703613281	2	500.79854	999.582528	-0.6272	-0.0003141	0.29853	0.0001495	-0.32867	-0.0001646	500.7986573837951	20.003	0.11601	20.003	19.944	20.06	0					6	2	3	0	0	0	0.24383	1	6292	6292		101.6	0	1	357900	+		30340	14377	20811	20883	30731	30731					0.08271967428709104
QDLDTRTR	8	Unmodified	_QDLDTRTR_					0	0	0		ENSG00000160117|ENST00000404085|ANKLE1;ENST00000596099.1_1_19:17392905-17393816:+|nuORF;nc|ENSG00000160117|Q8NAG6-1|ANKLE1;ENST00000404085.5_1_19:17392508-17397358:+|nuORF	ENSG00000160117|ENST00000404085|ANKLE1	ENSG00000160117|ENST00000404085|ANKLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7618408203125	2	502.759612	1003.50467	3.5714	0.0017956	0.30067	0.00015117	3.8721	0.0019467	502.7597356930305	19.923	0.2581	19.923	19.816	20.074	0					20	8	4	0	0	0	0.58597	1	5457	5457		51.335	5.3632	1	1017600			30341	5340	20812	20884	30732	30732					0.0030590977268047936
QDLEVIVIL	9	Unmodified	_QDLEVIVIL_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.3121948242188	2	521.313158	1040.61176	1.5066	0.00078539	-3.2292	-0.0016834	-1.7226	-0.00089802	521.3114916746922	12.969	0.19382	12.969	12.895	13.089	0					7	5	2	0	0	0	0.46194	1	2855	2855		29.15	2.4566	1	206520			30342	3222	20813	20885	30733	30733					0.09308066934318049
QDLFCLLAR	9	Unmodified	_QDLFCLLAR_					0	0	0			REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2898559570312	2	539.789327	1077.5641	1.9673	0.001062	-2.3613	-0.0012746	-0.39397	-0.00021266	540.2890735182236	41.174	0.18787	41.174	41.079	41.266	0					10	7	2	0	0	0	0.28897	1	16196	16196		51.193	6.6616	1	379830	+		30343	12994	20814	20886	30734	30734					0.028420894624787252
QDLIPDVLQ	9	Unmodified	_QDLIPDVLQ_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7855224609375	2	520.784764	1039.55498	0.071953	3.7472E-05	2.7143	0.0014136	2.7863	0.001451	520.786215077139	24.712	0.22309	24.712	24.602	24.825	0					11	5	3	0	0	0	0.11898	1	8349	8349		75.043	0.78827	1	543810			30344	5393	20815	20887	30735	30735					0.036780193777985914
QDLIRLVA	8	Unmodified	_QDLIRLVA_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2845458984375	2	464.284734	926.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.891	1	36.891	36.391	37.391	0								0	0	0	1.7419	1	13204	13204		49.442	6.5773	1				30345	4539	20816	20888	30736	30736					0.08870064168456793
QDLKTELLQR	10	Unmodified	_QDLKTELLQR_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	622.3539428710938	2	622.353877	1242.6932	0.18045	0.0001123	-0.087418	-5.4405E-05	0.093033	5.79E-05	622.3538566610129	30.289	0.31434	30.289	30.186	30.501	0					33	11	5	0	0	0	0.010919	1	9625	9625		129.42	19.943	1	1775600			30346	881	20817	20889	30737	30737					0.08156142626262408
QDLKTELLQR	10	Unmodified	_QDLKTELLQR_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	622.3539428710938	2	622.353877	1242.6932	0.42178	0.0002625	-0.43607	-0.00027139	-0.014288	-8.8921E-06	622.3536697890858	30.562	0.5669	30.562	30.432	30.999	0					40	13	6	0	0	0	0.013123	1	11017	11017		132.76	6.5153	1	15030000			30347	881	20817	20889	30738	30738					0.08156142626262408
QDLKTELLQR	10	Unmodified	_QDLKTELLQR_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.353759765625	2	622.353877	1242.6932	2.0474	0.0012742	-2.1359	-0.0013293	-0.088496	-5.5076E-05	622.3524811428948	30.553	0.20059	30.553	30.464	30.664	0					6	4	2	0	0	0	0.13022	1	11432	11432		88.177	15.298	1	169270			30348	881	20817	20889	30739	30739					0.08156142626262408
QDLKTELLQR	10	Unmodified	_QDLKTELLQR_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.35400390625	2	622.353877	1242.6932	0.11382	7.0838E-05	-0.050112	-3.1187E-05	0.063711	3.9651E-05	622.353893068799	30.538	0.74237	30.538	30.432	31.174	0					50	16	6	0	0	0	0.023179	1	11411	11411		112.41	0	1	16101000			30349	881	20817	20889	30740	30740					0.08156142626262408
QDLKTELLQR	10	Unmodified	_QDLKTELLQR_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;EEA1|p.K257Nfs*13|2|0.34|ENSG00000102189|chr12:92851138-92851138|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	622.352783203125	2	622.353877	1242.6932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.56	1	30.56	30.06	31.06	0								0	0	0	0.17777	1	11328	11328		54.722	0	1				30350	881	20817	20889	30741	30741					0.08156142626262408
QDLLALVR	8	Unmodified	_QDLLALVR_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.28436279296875	2	464.284734	926.554916	-0.48331	-0.00022439	-0.18765	-8.7123E-05	-0.67096	-0.00031151	464.284686164122	37.077	0.20987	37.077	36.977	37.187	0					9	4	3	0	0	0	0.53424	1	14453	14453		56.721	5.5284	1	210510			30351	5746	20818	20890	30742	30742					0.08870064168456793
QDLLKEASCGL	11	Unmodified	_QDLLKEASCGL_					0	0	0		ENST00000504041.1_1_5:169407-179718:+|nuORF;ENSG00000153404|ENST00000637938|PLEKHG4B	ENST00000504041.1_1_5:169407-179718:+|nuORF	ENST00000504041.1_1_5:169407-179718:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.3019409179688	2	588.800088	1175.58562	1.3529	0.00079657	-0.48902	-0.00028794	0.86385	0.00050863	588.7996738202079	43.664	0.54113	43.664	43.521	44.062	0					50	17	5	0	0	0	0.55715	1	17620	17620		40.058	0.80534	1	2188900			30352	5051	20819	20891	30743	30743					0.004854297005294939
QDLLQLQY	8	Unmodified	_QDLLQLQY_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.7720031738281	2	510.771657	1019.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.614	1	42.614	42.114	43.114	0								0	0	0	1.7419	1	14030	14030		53.351	3.9099	1				30353	4398;6989	20820	20892	30744	30744					0.019777502063334396
QDLLQLQY	8	Unmodified	_QDLLQLQY_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.77203369140625	2	510.771657	1019.52876	0.7951	0.00040611	0.024815	1.2675E-05	0.81991	0.00041879	510.77162430654096	42.561	0.17596	42.561	42.51	42.686	0					15	10	2	0	0	0	0.63077	1	14857	14857		44.117	1.7207	1	38081			30354	4398;6989	20820	20892	30745	30745					0.019777502063334396
QDLNEKARALK	11	Unmodified	_QDLNEKARALK_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	643.3676147460938	2	643.364776	1284.715	2.9321	0.0018864	2.3789	0.0015305	5.311	0.0034169	643.3663366477194	33.702	0.37516	33.702	33.517	33.892	0					14	8	3	0	0	0	0.26131	1	12862	12862		66.962	13.873	1	623760			30355	2837	20821	20893	30746	30746					0.08402947374838732
QDLPLLLLP	9	Unmodified	_QDLPLLLLP_					0	0	0		ENST00000413209.6_1_22:30090794-30090923:+|nuORF	ENST00000413209.6_1_22:30090794-30090923:+|nuORF	ENST00000413209.6_1_22:30090794-30090923:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.31695556640625	2	511.318243	1020.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.449	1	13.449	12.949	13.949	0								0	0	0	0.32356	1	3064	3064		30.504	7.4612	1				30356	9331	20822	20894	30747	30747					0.11244674659576503
QDLTHKLY	8	Unmodified	_QDLTHKLY_					0	0	0			REV__ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	REV__ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2742614746094	2	509.271824	1016.5291	-0.51427	-0.0002619	1.844	0.00093909	1.3297	0.00067718	509.2727380979249	29.61	0.47535	29.61	29.457	29.932	0					25	18	2	0	0	0	0.68432	1	9624	9624		35.618	3.6634	1	85080	+		30357	12199	20823	20895	30748	30748					0.021491699261900976
QDLVDSFQR	9	Unmodified	_QDLVDSFQR_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2774047851562	2	554.275095	1106.53564	3.603	0.001997	0.40838	0.00022636	4.0114	0.0022234	554.2754078630397	18.001	0.16121	18.001	17.899	18.06	0					7	3	3	0	0	0	0.42902	1	5317	5317		39.253	7.298	1	701060	+		30358	12992	20824	20896	30749	30749					-0.013369369131169151
QDMMQYMAQ	9	Unmodified	_QDMMQYMAQ_					0	0	0			REV__ENST00000508559.1_1_5:175735354-175735840:+|nuORF	REV__ENST00000508559.1_1_5:175735354-175735840:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.227294921875	2	573.224845	1144.43514	-0.10991	-6.3001E-05	2.0921	0.0011992	1.9822	0.0011362	573.22669410976	26.905	0.35925	26.905	26.744	27.104	0					25	7	5	0	0	0	0.20551	1	9648	9648		60.972	9.6365	1	717800	+		30359	17032	20825	20897	30750	30750					-0.13130376554272516
QDMNIKKN	8	Unmodified	_QDMNIKKN_					0	0	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7770690917969	2	495.755484	989.496415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.269	1	19.269	18.769	19.769	0								0	0	0	1.7419	1	5187	5187		45.952	1.5748	1				30360	243	20826	20898	30751	30751					0.0012463953167980435
QDNKNPHVT	9	Unmodified	_QDNKNPHVT_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7608032226562	2	526.759612	1051.50467	2.0491	0.0010794	0.091688	4.8298E-05	2.1408	0.0011277	526.7597165094788	21.538	0.78773	21.538	21.093	21.881	0					52	18	4	0	0	0	0.30951	1	6807	6807		49.442	5.3247	1	1815300			30361	4290	20827	20899	30752	30752					-0.019020902273268803
QDNKQPKL	8	Unmodified	_QDNKQPKL_					0	0	0			REV__TRIM66|p.P964Qfs*4|1|0.37|ENSG00000166436|chr11:8621158-8621158|G/-|frameshift_variant	REV__TRIM66|p.P964Qfs*4|1|0.37|ENSG00000166436|chr11:8621158-8621158|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.76861572265625	2	485.769448	969.524344	-1.2388	-0.00060177	-0.21762	-0.00010571	-1.4564	-0.00070748	485.7694020396853	23.169	0.25414	23.169	23.029	23.283	0					18	8	3	0	0	0	0.59773	1	6907	6907		49.442	5.0644	1	178250	+		30362	16121	20828	20900	30753	30753					0.03836285783427229
QDNKQPKL	8	Unmodified	_QDNKQPKL_					0	0	0			REV__TRIM66|p.P964Qfs*4|1|0.37|ENSG00000166436|chr11:8621158-8621158|G/-|frameshift_variant	REV__TRIM66|p.P964Qfs*4|1|0.37|ENSG00000166436|chr11:8621158-8621158|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7691345214844	2	485.769448	969.524344	0.6495	0.00031551	-1.501	-0.00072915	-0.85151	-0.00041364	485.76871599765866	23.353	0.41665	23.353	23.145	23.562	0					15	8	3	0	0	0	0.24622	1	8045	8045		108.09	17.311	1	947520	+		30363	16121	20828	20900	30754	30754					0.03836285783427229
QDNPKQKEQ	9	Unmodified	_QDNPKQKEQ_					0	0	0		L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|18|2|sense	L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|18|2|sense	L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|18|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7763061523438	2	557.778002	1113.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.255	1	11.255	10.755	11.755	0								0	0	0	0.39802	1	2264	2264		11.511	0	1				30364	11302	20829	20901	30755	30755					-0.01077838401442932
QDNQTKNHV	9	Unmodified	_QDNQTKNHV_					0	0	0		CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant;CYSLTR1|p.N224Ifs*9|1|0.59|ENSG00000173198|chrX:78273076-78273076|T/-|frameshift_variant;ENSG00000173198|ENST00000373304|CYSLTR1	CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant	CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.262939453125	2	542.262519	1082.51048	1.7905	0.00097092	-0.9734	-0.00052784	0.81711	0.00044309	542.262060598658	14.342	0.11303	14.342	14.282	14.395	0					7	5	2	0	0	0	0.26904	1	2945	2945		53.351	0.41475	1	84653			30365	734	20830	20902	30756	30756					-0.027469917156849988
QDNRTVSKI	9	Unmodified	_QDNRTVSKI_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant;CIC|p.P518Rfs*5|2|0.37|ENSG00000079432|chr19:42290317-42290317|C/-|frameshift_variant;CIC|p.P509Hfs*14|2|0.27|ENSG00000079432|chr19:42290289-42290289|C/-|frameshift_variant;CIC|p.A785Pfs*139|1|0.34|ENSG00000079432|chr19:42291117-42291117|G/-|frameshift_variant	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7910766601562	2	530.790912	1059.56727	0.72692	0.00038584	-0.40118	-0.00021295	0.32574	0.0001729	530.790717480702	19.401	0.11555	19.401	19.343	19.459	0					4	2	2	0	0	0	0.26904	1	6002	6002		53.351	2.016	1	319380			30366	1621	20831	20903	30757	30757					0.0398705584086656
QDPGTRRSRAG	11	Unmodified	_QDPGTRRSRAG_					0	0	0		ENST00000468535.5_1_7:1586590-1589169:-|nuORF	ENST00000468535.5_1_7:1586590-1589169:-|nuORF	ENST00000468535.5_1_7:1586590-1589169:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.8148803710938	2	600.813242	1199.61193	3.1086	0.0018677	-0.9129	-0.00054848	2.1957	0.0013192	600.8127465077783	14.134	0.35929	14.134	13.88	14.239	0					15	7	3	0	0	0	0.35352	1	3484	3484		56.632	3.6955	1	516510			30367	9814	20832	20904	30758	30758					0.020108797068814965
QDPIRVAQ	8	Unmodified	_QDPIRVAQ_					0	0	0		ENST00000368966.9_3_6:109615628-109650288:+|nuORF	ENST00000368966.9_3_6:109615628-109650288:+|nuORF	ENST00000368966.9_3_6:109615628-109650288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7572021484375	2	463.756341	925.498129	-0.70195	-0.00032554	2.7397	0.0012706	2.0378	0.00094503	463.7576592732136	20.94	0.1304	20.94	20.88	21.01	0					6	3	2	0	0	0	0.57171	1	6581	6581		52.937	1.6012	1	447040			30368	8935	20833	20905	30759	30759					0.03240016611937335
QDPPTIRITV	10	Unmodified	_QDPPTIRITV_					0	0	0			REV__ENSG00000158553|ENST00000444565|POM121L2	REV__ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.5520324707031	3	380.552151	1138.63462	0.22255	8.4692E-05	-0.60583	-0.00023055	-0.38328	-0.00014586	380.5519360822559	21.333	0.16528	21.333	21.225	21.39	0					5	3	2	0	0	0	0.65051	1	7071	7071		28.081	2.9555	1	394620	+		30369	15684	20834	20906	30760	30760					0.07085086051779399
QDPRACPPG	9	Unmodified	_QDPRACPPG_					0	0	0		SMARCA4|p.P109Rfs*194|1|0.35|ENSG00000127616|chr19:10985372-10985372|C/-|frameshift_variant	SMARCA4|p.P109Rfs*194|1|0.35|ENSG00000127616|chr19:10985372-10985372|C/-|frameshift_variant	SMARCA4|p.P109Rfs*194|1|0.35|ENSG00000127616|chr19:10985372-10985372|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.71875	2	470.718901	939.42325	0.54538	0.00025672	-1.2403	-0.00058385	-0.69496	-0.00032713	470.7182186940869	13.855	0.21184	13.855	13.749	13.961	0					7	4	2	0	0	0	0.55379	1	3329	3329		26.693	1.2427	1	183290			30370	22425	20835	20907	30761	30761					-0.04888489190943801
QDPRLFAEEK	10	Unmodified	_QDPRLFAEEK_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	616.8170776367188	2	616.817127	1231.6197	-0.01783	-1.0998E-05	0.037097	2.2882E-05	0.019267	1.1884E-05	616.8171425258205	33.504	0.41611	33.504	33.3	33.716	0					19	8	3	0	0	0	0.11308	1	12734	12734		93.143	4.9663	1	435210			30371	5509	20836	20908	30762	30762					0.013155941838022045
QDPSYSAA	8	Unmodified	_QDPSYSAA_					0	0	0			REV__ENSG00000075461|ENST00000262138|CACNG4	REV__ENSG00000075461|ENST00000262138|CACNG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.683349609375	2	419.682507	837.350462	0.42973	0.00018035	0.87022	0.00036522	1.3	0.00054557	419.6830351380281	14.597	0.17671	14.597	14.505	14.682	0					6	4	2	0	0	0	0.61938	1	3601	3601		45.952	1.8352	1	45470	+		30372	13236	20837	20909	30763	30763					-0.0747191971271377
QDQDWGCRR	9	Unmodified	_QDQDWGCRR_					0	0	0		ENST00000555253.1_1_14:75413094-75413220:-|nuORF	ENST00000555253.1_1_14:75413094-75413220:-|nuORF	ENST00000555253.1_1_14:75413094-75413220:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.2556762695312	2	582.254171	1162.49379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.131	1	45.131	44.631	45.631	0								0	0	0	0.36266	1	17497	17497		21.96	1.013	1				30373	10655	20838	20910	30764	30764					-0.08095815873275569
QDQFCLQK	8	Carbamidomethyl (C)	_QDQFC(Carbamidomethyl (C))LQK_	QDQFC(1)LQK		QDQFC(59)LQK		0	1	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7520751953125	2	533.752941	1065.49133	0.29016	0.00015487	-0.70489	-0.00037624	-0.41473	-0.00022136	533.7518571816715	15.508	0.35789	15.508	15.259	15.617	0					15	7	4	0	0	0	0.51384	1	4265	4265		58.782	10.866	1	1472700	+		30374	13319	20839	20911	30765	30765	514				-0.038796643309296996
QDQLVRIL	8	Unmodified	_QDQLVRIL_					0	0	0			REV__GOLM1|p.N182Efs*2|1|0.23|ENSG00000135052|chr9:86040796-86040797|-/T|frameshift_variant	REV__GOLM1|p.N182Efs*2|1|0.23|ENSG00000135052|chr9:86040796-86040797|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7953796386719	2	492.795466	983.57638	-1.2654	-0.0006236	0.66318	0.00032681	-0.60226	-0.00029679	492.7960998345665	19.656	0.73695	19.656	19.484	20.221	0					29	24	2	0	0	0	0.68432	1	5355	5355		35.618	0.46626	1	97628	+		30375	14779	20840	20912	30766	30766					0.08393449197183145
QDQQVRGPEA	10	Unmodified	_QDQQVRGPEA_					0	0	0		ENST00000526142.5_1_11:428365-428637:-|nuORF	ENST00000526142.5_1_11:428365-428637:-|nuORF	ENST00000526142.5_1_11:428365-428637:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.271240234375	2	564.275626	1126.5367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.444	1	38.444	37.944	38.944	0								0	0	0	0.328	1	14609	14609		46.457	5.6786	1				30376	10371	20841	20913	30767	30767					-0.02150722544160999
QDQRTTAGPL	10	Unmodified	_QDQRTTAGPL_					0	0	0			REV__ENSG00000186603|ENST00000334815|HPDL	REV__ENSG00000186603|ENST00000334815|HPDL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.782470703125	2	543.780544	1085.54654	3.6565	0.0019883	0.42378	0.00023044	4.0803	0.0022188	543.7807544492689	35.505	0.37453	35.505	35.245	35.62	0					26	7	4	0	0	0	0.66185	1	13657	13657		26.693	1.1189	1	1537700	+		30377	17084	20842	20914	30768	30768					0.0071846546118194965
QDQRVKKV	8	Unmodified	_QDQRVKKV_					0	0	0		ENST00000399429.7_1_7:7495733-7529039:-|nuORF	ENST00000399429.7_1_7:7495733-7529039:-|nuORF	ENST00000399429.7_1_7:7495733-7529039:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7983703613281	2	500.79854	999.582528	1.1038	0.0005528	-1.5349	-0.00076866	-0.43104	-0.00021586	500.7978732944684	20.036	0.16678	20.036	19.927	20.094	0					6	3	2	0	0	0	0.41	1	6311	6311		68.787	6.6794	1	621890			30378	9239	20843	20915	30769	30769					0.08271967428709104
QDRGRNVR	8	Unmodified	_QDRGRNVR_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.77508544921875	2	500.773388	999.532223	2.9218	0.0014631	-0.13996	-7.0088E-05	2.7818	0.0013931	500.7733716791887	15.737	0.3609	15.737	15.471	15.832	0					18	7	3	0	0	0	0.59773	1	4172	4172		49.442	49.442	1	1787000	+		30379	15186	20844	20916	30770	30770					0.03243857823554208
QDRQLRLL	8	Unmodified	_QDRQLRLL_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3117065429688	2	521.311815	1040.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.957	1	12.957	12.457	13.457	0								0	0	0	1.7419	1	2889	2889		30.504	13.139	1				30380	3323	20845	20917	30771	30771					0.09039656320032918
QDRRMMFPP	9	Unmodified	_QDRRMMFPP_					0	0	0		ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENST00000435712.1_1_10:131904549-131906742:+|nuORF;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000236761|ENST00000314099|CTAGE9	ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000288784|Q8IX94|CTAGE4	ENSG00000150527|ENST00000640607|MIA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.2855834960938	2	589.283886	1176.55322	1.4719	0.00086738	0.45471	0.00026795	1.9266	0.0011353	589.284430283204	17.996	0.16819	17.996	17.887	18.055	0					8	3	3	0	0	0	0.036372	1	5461	5461		102.77	1.1726	1	945860			30381	4926;7911	20846	20918	30772	30772					-0.027996361834311756
QDRRMMFPP	9	Unmodified	_QDRRMMFPP_					0	0	0		ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENST00000435712.1_1_10:131904549-131906742:+|nuORF;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000236761|ENST00000314099|CTAGE9	ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000288784|Q8IX94|CTAGE4	ENSG00000150527|ENST00000640607|MIA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.2845458984375	2	589.283886	1176.55322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.836	1	17.836	17.336	18.336	0								0	0	0	0.14517	1	4531	4531		60.972	15	1				30382	4926;7911	20846	20918	30773	30773					-0.027996361834311756
QDSGTKAFCNV	11	Unmodified	_QDSGTKAFCNV_					0	0	0		ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF	ENST00000551766.5_1_16:22437686-22447115:-|nuORF	ENST00000551766.5_1_16:22437686-22447115:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.2666015625	2	585.266413	1168.51827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.018	1	17.018	16.518	17.518	0								0	0	0	0.45674	1	4981	4981		21.686	1.689	1				30383	10628	20847	20919	30774	30774					-0.059246005104114374
QDSLAGLVL	9	Unmodified	_QDSLAGLVL_					0	0	0		ENSG00000185634|ENST00000332408|SHC4	ENSG00000185634|ENST00000332408|SHC4	ENSG00000185634|ENST00000332408|SHC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2611999511719	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.742	1	31.742	31.242	32.242	0								0	0	0	0.3428	1	10543	10543		26.693	1.1189	1				30384	7092	20848	20920	30775	30775					0.04662365177614447
QDSLALQPKL	10	Unmodified	_QDSLALQPKL_					0	0	0		PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.819091796875	2	556.819138	1111.62372	1.7054	0.00094957	-0.87542	-0.00048745	0.82993	0.00046212	556.8186404162872	37.785	0.72148	37.785	37.36	38.081	0					53	23	3	0	0	0	0.536	1	14710	14710		41.427	2.1738	1	329500			30385	4643	20849	20921	30776	30776					0.07237683677522
QDSPQLHF	8	Unmodified	_QDSPQLHF_					0	0	0			REV__IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant	REV__IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.23406982421875	2	486.232699	970.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.572	1	18.572	18.072	19.072	0								0	0	0	1.7419	1	4873	4873		25.45	0.94616	1		+		30386	15163	20850	20922	30777	30777					-0.035562626590490254
QDSQEGAHIR	10	Unmodified	_QDSQEGAHIR_					0	0	0		nc|ENSG00000236438|C9JC47|FAM157A;nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C	nc|ENSG00000236438|C9JC47|FAM157A	nc|ENSG00000236438|C9JC47|FAM157A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.7737426757812	2	570.773251	1139.53195	0.077403	4.4179E-05	-0.28375	-0.00016196	-0.20635	-0.00011778	570.7732961337058	35.455	0.12061	35.455	35.37	35.49	0					6	3	2	0	0	0	0.56931	1	13731	13731		37.812	4.9991	1	58278			30387	11777	20851	20923	30778	30778					-0.03223606686947278
QDSRQRRP	8	Unmodified	_QDSRQRRP_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.780029296875	2	521.778671	1041.54279	1.763	0.00091991	1.2154	0.00063416	2.9784	0.0015541	521.7792108035324	12.431	0.71605	12.431	12.138	12.854	0					64	17	5	0	0	0	0.58597	1	2715	2715		51.335	0.14276	1	14239000	+		30388	17422	20852	20924	30779	30779					0.023678404779957418
QDTYGQQWK	9	Unmodified	_QDTYGQQWK_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.2676391601562	2	577.26727	1152.51999	-0.074599	-4.3064E-05	0.35578	0.00020538	0.28118	0.00016232	577.2676330459368	26.78	0.1892	26.78	26.657	26.847	0					8	4	2	0	0	0	0.19605	1	9280	9280		62.107	10.772	1	152450			30389	3449	20853	20925	30780	30780					-0.050172234301498975
QDVLGIRQL	9	Unmodified	_QDVLGIRQL_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.3067016601562	2	521.306198	1040.59784	0.33373	0.00017398	0.2799	0.00014592	0.61364	0.00031989	521.3063694279265	38.006	0.33179	38.006	37.915	38.247	0					46	18	3	0	0	0	0.029571	1	12815	12815		109.44	5.4252	1	915350			30390	1292	20854	20926	30781	30781					0.07916834225898128
QDVLGIRQL	9	Unmodified	_QDVLGIRQL_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.3064575195312	2	521.306198	1040.59784	1.0456	0.00054508	-0.25538	-0.00013313	0.79021	0.00041194	521.3061143794039	37.981	0.30347	37.981	37.899	38.203	0					41	15	4	0	0	0	0.02953	1	13578	13578		109.48	0	1	635640			30391	1292	20854	20926	30782	30782					0.07916834225898128
QDYLVSLTR	9	Unmodified	_QDYLVSLTR_					0	0	0		nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C	nc|ENSG00000166908|Q8TBX8-3|PIP4K2C	nc|ENSG00000166908|Q8TBX8-3|PIP4K2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.79833984375	2	547.795663	1093.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.957	1	40.957	40.457	41.457	0								0	0	0	0.15687	1	16258	16258		58.23	0.41864	1				30392	5944	20855	20927	30783	30783					0.03372824126358864
QDYTEQKPI	9	Unmodified	_QDYTEQKPI_					0	0	0			REV__nc|ENSG00000291014|Q9Y6N3|CLCA3P	REV__nc|ENSG00000291014|Q9Y6N3|CLCA3P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.279296875	2	561.277303	1120.54005	1.8267	0.0010253	1.7035	0.00095612	3.5302	0.0019814	561.2783993640965	16.021	0.16693	16.021	15.913	16.08	0					8	3	3	0	0	0	0.1424	1	4510	4510		69.628	7.8631	1	1169300	+		30393	21259	20856	20928	30784	30784					-0.015394724901852896
QEAEAAQRL	9	Unmodified	_QEAEAAQRL_					0	0	0		ENST00000589308.1_1_19:36606815-36612715:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB;ENSG00000105254|ENST00000221855|TBCB	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2620849609375	2	508.261988	1014.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.058	1	22.058	21.558	22.558	0								0	0	0	0.12732	1	7410	7410		49.536	15.614	1				30394	9141	20857	20929	30785	30785					0.0027479391541191944
QEAEMAQNAV	10	Unmodified	_QEAEMAQNAV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7454223632812	2	545.745313	1089.47607	1.8644	0.0010175	-1.575	-0.00085952	0.28941	0.00015794	545.7445355021214	29.009	0.21367	29.009	28.888	29.101	0					12	5	3	0	0	0	0.39647	1	10311	10311		56.632	5.4396	1	354960			30395	6049	20858	20930	30786	30786					-0.06508575918792303
QEAEMAQNAV	10	Unmodified	_QEAEMAQNAV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.745849609375	2	545.745313	1089.47607	0.90188	0.0004922	-0.31654	-0.00017275	0.58534	0.00031945	545.7449280807056	29.028	0.15976	29.028	28.927	29.087	0					6	3	2	0	0	0	0.018513	1	10693	10693		126.24	62.035	1	267060			30396	6049	20858	20930	30787	30787					-0.06508575918792303
QEAEMAQNAV	10	Unmodified	_QEAEMAQNAV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7460327148438	2	545.745313	1089.47607	0.56364	0.00030761	0.13613	7.4291E-05	0.69977	0.0003819	545.7455680155908	28.967	0.31369	28.967	28.86	29.174	0					12	6	3	0	0	0	0.24329	1	10571	10571		74.165	31.769	1	275950			30397	6049	20858	20930	30788	30788					-0.06508575918792303
QEAHRTYFS	9	Unmodified	_QEAHRTYFS_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5;COL6A6|p.Y493Lfs*29|1|0.06|ENSG00000206384|chr3:130566894-130566895|-/GTTGC|frameshift_variant;nc|ENSG00000206384|A6NMZ7-2|COL6A6;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7645874023438	2	569.767437	1137.52032	-1.333	-0.0007595	-2.4947	-0.0014214	-3.8277	-0.0021809	569.766013084656	19.739	0.30133	19.739	19.479	19.781	0					12	7	2	0	0	0	0.27249	1	5351	5351		52.937	8.5595	1	94774			30398	6380;7767	20859	20931	30789	30789					-0.04293803710288557
QEAKELARQ	9	Unmodified	_QEAKELARQ_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.78564453125	2	536.790912	1071.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.446	1	19.446	18.946	19.946	0								0	0	0	0.17415	1	6012	6012		54.722	5.1863	1				30399	7617	20860	20932	30790	30790					0.034350558408505094
QEAKLKAKGL	10	Unmodified	_QEAKLKAKGL_					0	0	0		ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF;ENSG00000163660|ENST00000295926|CCNL1;ENST00000464679.5_1_3:156867272-156869982:-|nuORF;ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1	ENST00000470121.5_1_3:156866032-156869342:-|nuORF	ENST00000470121.5_1_3:156866032-156869342:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.3373413085938	2	543.337498	1084.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.863	1	12.863	12.363	13.363	0								0	0	0	0.4201	1	2799	2799		15.642	2.6826	1				30400	5590	20861	20933	30791	30791					0.12149980294088891
QEAKRPQYCS	10	Unmodified	_QEAKRPQYCS_					0	0	0		MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant;ENSG00000138347|ENST00000358913|MYPN;MYPN|p.K575Nfs*9|1|0.23|ENSG00000138347|chr10:68166410-68166410|C/-|frameshift_variant	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.2849731445312	2	605.287679	1208.56081	-0.46741	-0.00028292	-0.90195	-0.00054594	-1.3694	-0.00082886	605.287161940267	13.003	0.36582	13.003	12.785	13.151	0					24	10	3	0	0	0	0.76979	1	2808	2808		9.1829	0	1	1321700			30401	4247	20862	20934	30792	30792					-0.035132053821598674
QEALAAARL	9	Unmodified	_QEALAAARL_					0	0	0		ENST00000531964.5_1_15:101812984-101817507:-|nuORF;ENST00000398226.7_1_15:101812984-101817622:-|nuORF;ENSG00000131871|ENST00000526049|SELENOS;ENST00000526043.1_1_15:101815456-101816896:-|nuORF;ENST00000529968.1_1_15:101815456-101817667:-|nuORF;ENST00000527833.5_1_15:101814760-101817622:-|nuORF	ENST00000531964.5_1_15:101812984-101817507:-|nuORF	ENST00000531964.5_1_15:101812984-101817507:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.77191162109375	2	471.771991	941.529429	0.58017	0.00027371	-0.61993	-0.00029246	-0.039761	-1.8758E-05	471.77175877633795	31.984	0.17756	31.984	31.871	32.048	0					7	4	2	0	0	0	0.44593	1	11695	11695		37.812	5.8567	1	48135			30402	3747	20863	20935	30793	30793					0.056325896460293734
QEALAHAL	8	Unmodified	_QEALAHAL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.7322998046875	2	426.732335	851.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.084	1	29.084	28.584	29.584	0								0	0	0	1.7419	1	10349	10349		71.378	23.462	1				30403	4171	20864	20936	30794	30794					0.01844942691889173
QEALFRHQ	8	Unmodified	_QEALFRHQ_					0	0	0		nc|ENSG00000149201|Q6ZN84-2|CCDC81;ENSG00000149201|ENST00000445632|CCDC81	nc|ENSG00000149201|Q6ZN84-2|CCDC81	nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7677001953125	2	514.76724	1027.51993	1.167	0.00060075	-0.69422	-0.00035736	0.47282	0.00024339	514.7668850869194	12.931	0.11017	12.931	12.868	12.978	0					5	3	2	0	0	0	0.5535	1	2836	2836		54.776	5.3348	1	268350			30404	4867	20865	20937	30795	30795					0.0072682136051298585
QEALHTQML	9	Unmodified	_QEALHTQML_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.7705078125	2	535.768591	1069.52263	1.2622	0.00067625	0.34196	0.00018321	1.6042	0.00085946	535.7688607905309	32.497	0.16796	32.497	32.422	32.59	0					12	7	2	0	0	0	0.36892	1	10500	10500		44.377	6.5657	1	112410			30405	4144	20866	20938	30796	30796					-0.009350912968557168
QEALHTQML	9	Unmodified	_QEALHTQML_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7686767578125	2	535.768591	1069.52263	2.1876	0.001172	-1.6906	-0.00090575	0.49703	0.0002663	535.7678710742974	32.754	0.24754	32.754	32.668	32.915	0					15	6	3	0	0	0	0.067603	1	12049	12049		89.029	6.2783	1	492030			30406	4144	20866	20938	30797	30797					-0.009350912968557168
QEALHTQML	9	Unmodified	_QEALHTQML_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7686767578125	2	535.768591	1069.52263	1.8216	0.00097598	-1.9996	-0.0010713	-0.17799	-9.5361E-05	535.7674761621303	32.724	0.29222	32.724	32.639	32.932	0					15	7	3	0	0	0	0.12834	1	12472	12472		72.879	18.103	1	684510			30407	4144	20866	20938	30798	30798					-0.009350912968557168
QEALHTQML	9	Unmodified	_QEALHTQML_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7694702148438	2	535.768591	1069.52263	1.0698	0.00057319	0.27238	0.00014593	1.3422	0.00071912	535.7686800469921	32.531	0.10653	32.531	32.447	32.554	0					8	3	3	0	0	0	0.42902	1	11321	11321		39.253	1.4413	1	126310			30408	4144	20866	20938	30799	30799					-0.009350912968557168
QEALKCMLA	9	Unmodified	_QEALKCMLA_					0	0	0			REV__NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant	REV__NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7566833496094	2	503.756638	1005.49872	-0.060037	-3.0244E-05	-1.0849	-0.00054655	-1.145	-0.00057679	503.75657200419204	26.039	0.47208	26.039	25.732	26.204	0					25	9	5	0	0	0	0.12239	1	8923	8923		74.255	14.137	1	1574500	+		30409	17150	20867	20939	30800	30800					-0.003806480548860236
QEALKYTVL	9	Unmodified	_QEALKYTVL_					0	0	0		TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant;nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4	TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.8043823242188	2	532.802957	1063.59136	1.0633	0.00056653	0.65075	0.00034672	1.714	0.00091325	532.8036294023832	38.847	0.13788	38.847	38.801	38.938	0					8	5	2	0	0	0	0.38666	1	15265	15265		42.864	10.052	1	76126			30410	5469	20868	20940	30801	30801					0.06210896274501465
QEALKYTVL	9	Unmodified	_QEALKYTVL_					0	0	0		TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant;nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4	TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8034057617188	2	532.802957	1063.59136	0.71773	0.00038241	-0.31991	-0.00017045	0.39783	0.00021196	532.8027409650823	38.774	0.20853	38.774	38.695	38.903	0					8	4	2	0	0	0	0.1424	1	15274	15274		69.628	6.0938	1	91239			30411	5469	20868	20940	30802	30802					0.06210896274501465
QEALTVLGR	9	Unmodified	_QEALTVLGR_					0	0	0		ENST00000580953.5_1_17:80007881-80009420:-|nuORF;ENST00000583784.1_1_17:80007881-80008457:-|nuORF	ENST00000580953.5_1_17:80007881-80009420:-|nuORF	ENST00000580953.5_1_17:80007881-80009420:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.52545166015625	3	329.525825	985.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.531	1	21.531	21.031	22.031	0								0	0	0	0.3245	1	7154	7154		30.569	0	1				30412	10870	20869	20941	30803	30803					0.06228858817530636
QEAPAGHRY	9	Unmodified	_QEAPAGHRY_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1;REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.751953125	2	514.749047	1027.48354	3.2165	0.0016557	2.6691	0.0013739	5.8856	0.0030296	514.7505443925171	11.318	0.056595	11.318	11.281	11.337	0					6	3	2	0	0	0	0.39215	1	2181	2181		42.396	1.8235	1	109960	+		30413	13049;20294	20870	20942	30804	30804					-0.02910055536199252
QEAPALVRL	9	Unmodified	_QEAPALVRL_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.79486083984375	2	498.795466	995.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.332	1	38.332	37.832	38.832	0								0	0	0	0.17378	1	14560	14560		54.776	20.855	1				30414	8008	20871	20943	30805	30805					0.07841449197189831
QEARLHRLDA	10	Unmodified	_QEARLHRLDA_					0	0	0			REV__ENST00000485715.2_1_22:20024321-20049197:+|nuORF	REV__ENST00000485715.2_1_22:20024321-20049197:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.8298950195312	2	604.82836	1207.64217	3.014	0.001823	-0.62937	-0.00038066	2.3847	0.0014423	604.8279324720785	33.177	0.50693	33.177	33.076	33.583	0					24	10	3	0	0	0	0.28036	1	12571	12571		69.628	3.1983	1	3967500	+		30415	19656	20872	20944	30806	30806					0.046652383720811486
QEATPFYY	8	Unmodified	_QEATPFYY_					0	0	0			REV__ENSG00000186767|ENST00000374884|SPIN4	REV__ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7307434082031	2	509.729458	1017.44436	-0.4121	-0.00021006	2.526	0.0012876	2.1139	0.0010775	509.73106830411086	17.242	0.3514	17.242	17.132	17.483	0					11	7	3	0	0	0	0.54629	1	5097	5097		55.504	6.0627	1	356540	+		30416	17089	20873	20945	30807	30807					-0.06366200610432315
QEATTKKLPA	10	Unmodified	_QEATTKKLPA_					0	0	0			REV__ENSG00000159723|ENST00000290953|AGRP	REV__ENSG00000159723|ENST00000290953|AGRP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8114624023438	2	543.811313	1085.60807	0.32251	0.00017538	0.28666	0.00015589	0.60917	0.00033127	543.8114512718254	20.604	0.16637	20.604	20.495	20.662	0					6	3	2	0	0	0	0.47859	1	6718	6718		47.657	0	1	188900	+		30417	15725	20874	20946	30808	30808					0.06869397160471635
QECPIKEVV	9	Unmodified	_QECPIKEVV_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7753295898438	2	522.773342	1043.53213	1.6475	0.00086129	1.8057	0.00094399	3.4533	0.0018053	522.7741615170538	17.82	0.17537	17.82	17.735	17.91	0					7	4	2	0	0	0	0.46194	1	5108	5108		36.447	0.82846	1	464010			30418	4070	20875	20947	30809	30809					0.012106769886713664
QECSEQAQ	8	Unmodified	_QECSEQAQ_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.68218994140625	2	461.682182	921.34981	-0.44538	-0.00020562	-0.72101	-0.00033288	-1.1664	-0.0005385	461.6824424568739	19.152	0.50073	19.152	18.93	19.431	0					42	15	4	0	0	0	0.59773	1	4849	4849		49.442	0	1	722460	+		30419	16803	20876	20948	30810	30810					-0.11401082424072229
QECSEQAQ	8	Unmodified	_QECSEQAQ_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.6827392578125	2	461.682182	921.34981	-1.1441	-0.0005282	0.61363	0.0002833	-0.53045	-0.0002449	461.68290223977345	19.157	0.42751	19.157	18.954	19.382	0					40	13	4	0	0	0	0.61625	1	5109	5109		46.457	2.0796	1	749350	+		30420	16803	20876	20948	30811	30811					-0.11401082424072229
QEDHVSYNFV	10	Unmodified	_QEDHVSYNFV_					0	0	0			REV__COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant	REV__COL24A1|p.P563Lfs*42|1|0.04|ENSG00000171502|chr1:86089193-86089193|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	619.2772827148438	2	619.277835	1236.54112	0.65103	0.00040317	-4.3087	-0.0026683	-3.6577	-0.0022651	619.2761282454165	12.776	0.064995	12.776	12.737	12.802	0					7	3	3	0	0	0	0.74461	1	2553	2553		14.137	0.68308	1	90742	+		30421	12553	20877	20949	30812	30812					-0.06769258121289567
QEDILQLQQ	9	Unmodified	_QEDILQLQQ_					0	0	0			REV__nc|ENSG00000162236|Q13190-3|STX5	REV__nc|ENSG00000162236|Q13190-3|STX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.791015625	2	557.790578	1113.5666	-0.87152	-0.00048613	0.40345	0.00022504	-0.46807	-0.00026108	557.7914001695223	25.046	0.28352	25.046	24.844	25.128	0					17	6	4	0	0	0	0.020674	1	7887	7887		120.87	8.7612	1	147010	+		30422	15805	20878	20950	30813	30813					0.014362164011345158
QEDPLAHL	8	Unmodified	_QEDPLAHL_					0	0	0			REV__STAB2|p.A1792D|1|0.38|ENSG00000136011|chr12:103733097-103733097|C/A|missense_variant	REV__STAB2|p.A1792D|1|0.38|ENSG00000136011|chr12:103733097-103733097|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7349853515625	2	461.735074	921.455596	-0.82139	-0.00037927	0.95486	0.00044089	0.13347	6.1626E-05	461.735324646472	24.559	0.097973	24.559	24.526	24.624	0					9	3	3	0	0	0	0.73426	1	7541	7541		29.15	1.2673	1	108740	+		30423	21608	20879	20951	30814	30814					-0.00827378516294175
QEDWWKHA	8	Unmodified	_QEDWWKHA_					0	0	0			REV__ENSG00000132423|ENST00000254759|COQ3	REV__ENSG00000132423|ENST00000254759|COQ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.251708984375	2	550.251423	1098.48829	1.8348	0.0010096	-0.89009	-0.00048977	0.94471	0.00051983	550.2508468555445	15.494	0.21861	15.494	15.45	15.669	0					9	5	2	0	0	0	0.61938	1	4026	4026		45.952	3.5558	1	758220	+		30424	14654	20880	20952	30815	30815					-0.05701171393434379
QEEFRKVL	8	Unmodified	_QEEFRKVL_					0	0	0			REV__ENST00000536663.5_1_12:122967212-122975555:-|nuORF	REV__ENST00000536663.5_1_12:122967212-122975555:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7932739257812	2	524.792924	1047.57129	0.69195	0.00036313	0.27288	0.00014321	0.96484	0.00050634	524.7930816880622	35.439	0.24713	35.439	35.344	35.591	0					30	13	3	0	0	0	0.25001	1	11597	11597		101.21	5.0211	1	242840	+		30425	12972	20881	20953	30816	30816					0.049411453345555856
QEEIEKIRQT	10	Unmodified	_QEEIEKIRQT_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	637.3411254882812	2	637.340966	1272.66738	1.6879	0.0010758	-1.2708	-0.00080996	0.41706	0.00026581	637.340216145076	11.509	0.1904	11.509	11.397	11.588	0					12	5	3	0	0	0	0.3337	1	2365	2365		63.534	1.4264	1	264850			30426	486	20882	20954	30817	30817					0.041952483839850174
QEEKIAALQ	9	Unmodified	_QEEKIAALQ_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2833862304688	2	515.282389	1028.55022	3.2385	0.0016688	0.37986	0.00019573	3.6184	0.0018645	515.2824484879983	29.921	0.21731	29.921	29.813	30.031	0					7	4	2	0	0	0	0.44593	1	11029	11029		37.812	1.4939	1	723380			30427	7486	20883	20955	30818	30818					0.03709135235044414
QEEKKGATR	9	Unmodified	_QEEKKGATR_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.28759765625	2	523.783087	1045.55162	1.566	0.00082024	4.0205	0.0021059	5.5865	0.0029261	524.2864790023848	15.587	0.064461	15.587	15.546	15.61	0					4	2	2	0	0	0	0.070005	1	3533	3533		88.177	8.7259	1	53354	+		30428	16632	20884	20956	30819	30819					0.030667693238001448
QEEKLKAK	8	Unmodified	_QEEKLKAK_					0	0	0		ENSG00000142621|ENST00000688493|FHAD1;ENST00000471347.5_1_1:15654853-15671627:+|nuORF	ENSG00000142621|ENST00000688493|FHAD1	ENSG00000142621|ENST00000688493|FHAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2872009277344	2	487.287474	972.560395	-0.33977	-0.00016557	0.38728	0.00018872	0.047508	2.315E-05	487.2874754132884	17.419	0.20934	17.419	17.29	17.499	0					12	5	4	0	0	0	0.37144	1	4914	4914		74.255	0	1	1179100			30429	4503	20885	20957	30820	30820					0.07301742960282809
QEEKSRVA	8	Unmodified	_QEEKSRVA_					0	0	0		ENST00000342922.8_1_11:47290950-47291097:+|nuORF	ENST00000342922.8_1_11:47290950-47291097:+|nuORF	ENST00000342922.8_1_11:47290950-47291097:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7514343261719	2	473.751256	945.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.762	1	11.762	11.262	12.262	0								0	0	0	1.7419	1	2345	2345		63.306	3.188	1				30430	8741	20886	20958	30821	30821					0.013034088867129867
QEELVKISL	9	Unmodified	_QEELVKISL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8096923828125	2	529.808239	1057.60193	0.90264	0.00047823	1.0076	0.00053382	1.9102	0.0010121	529.8091004824728	44.082	0.081993	44.082	44.01	44.092	0					5	4	2	0	0	0	0.35096	1	17199	17199		46.457	20.883	1	54256			30431	5547	20887	20959	30822	30822					0.07542878928961727
QEELVKISL	9	Unmodified	_QEELVKISL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3114013671875	2	529.808239	1057.60193	0.73094	0.00038726	1.7434	0.00092368	2.4744	0.0013109	529.8090827322884	43.998	0.13762	43.998	43.934	44.072	0					13	5	3	0	0	0	0.22823	1	17623	17623		60.118	5.3419	1	252450			30432	5547	20887	20959	30823	30823					0.07542878928961727
QEELVKISL	9	Unmodified	_QEELVKISL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8090209960938	2	529.808239	1057.60193	1.6304	0.00086378	-0.96709	-0.00051237	0.66327	0.0003514	529.8078851344861	44.013	0.20091	44.013	43.925	44.126	0					16	8	2	0	0	0	0.15558	1	17619	17619		60.118	12.461	1	348900			30433	5547	20887	20959	30824	30824					0.07542878928961727
QEENITRAL	9	Unmodified	_QEENITRAL_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2837524414062	2	537.28292	1072.55129	2.1023	0.0011295	-1.5511	-0.00083341	0.55112	0.00029611	537.2820719595852	30.957	0.42881	30.957	30.835	31.264	0					20	10	3	0	0	0	0.010427	1	11211	11211		140.11	49.511	1	1357100			30434	1943	20888	20960	30825	30825					0.017913496039454913
QEENITRAL	9	Unmodified	_QEENITRAL_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.283203125	2	537.28292	1072.55129	1.8733	0.0010065	-0.94619	-0.00050837	0.92716	0.00049815	537.2823584213293	30.986	0.41276	30.986	30.854	31.267	0					19	9	3	0	0	0	0.026848	1	11628	11628		112.11	20.842	1	1084900			30435	1943	20888	20960	30826	30826					0.017913496039454913
QEENITRAL	9	Unmodified	_QEENITRAL_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2836303710938	2	537.28292	1072.55129	-1.4225	-0.00076428	2.7015	0.0014515	1.279	0.0006872	537.2839965652327	30.745	0.18716	30.745	30.644	30.832	0					11	5	3	0	0	0	0.11411	1	10504	10504		76.17	20.665	1	146710			30436	1943	20888	20960	30827	30827					0.017913496039454913
QEENITRAL	9	Unmodified	_QEENITRAL_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.283447265625	2	537.28292	1072.55129	0.69781	0.00037492	0.039871	2.1422E-05	0.73768	0.00039634	537.2829108114311	30.937	0.21147	30.937	30.831	31.043	0					11	4	3	0	0	0	0.095583	1	11497	11497		80.455	3.137	1	323360			30437	1943	20888	20960	30828	30828					0.017913496039454913
QEENITRAL	9	Unmodified	_QEENITRAL_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2832641601562	2	537.28292	1072.55129	1.9728	0.00106	-1.3607	-0.0007311	0.61207	0.00032886	537.282133495099	30.921	0.46098	30.921	30.763	31.224	0					20	9	3	0	0	0	0.019258	1	11493	11493		123.21	42.753	1	1561700			30438	1943	20888	20960	30829	30829					0.017913496039454913
QEENITRAL	9	Unmodified	_QEENITRAL_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.283447265625	2	537.28292	1072.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.981	1	30.981	30.481	31.481	0								0	0	0	0.17378	1	11532	11532		54.776	8.8244	1				30439	1943	20888	20960	30830	30830					0.017913496039454913
QEEQTRVAL	9	Unmodified	_QEEQTRVAL_					0	0	0		nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55;ENST00000496302.1_1_10:95278654-95279576:+|nuORF	nc|ENSG00000138180|Q53EZ4-2|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2838134765625	2	537.28292	1072.55129	-0.36468	-0.00019594	1.3533	0.00072709	0.98859	0.00053115	537.283629872092	30.744	0.17964	30.744	30.667	30.846	0					16	6	4	0	0	0	0.1424	1	10110	10110		69.628	4.1622	1	334080			30440	4236	20889	20961	30831	30831					0.017913496039454913
QEETNFKSL	9	Unmodified	_QEETNFKSL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2703247070312	2	548.269478	1094.5244	0.48675	0.00026687	0.072839	3.9936E-05	0.55959	0.0003068	548.269810812751	30.281	0.25062	30.281	30.195	30.445	0					12	6	3	0	0	0	0.28897	1	10908	10908		51.193	5.2204	1	221620			30441	2826	20890	20962	30832	30832					-0.019077590072356543
QEETNFKSL	9	Unmodified	_QEETNFKSL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2698974609375	2	548.269478	1094.5244	0.40828	0.00022385	0.12433	6.8169E-05	0.53262	0.00029202	548.2693199642375	30.042	0.13951	30.042	29.984	30.123	0					9	5	2	0	0	0	0.41113	1	9843	9843		40.778	0	1	84171			30442	2826	20890	20962	30833	30833					-0.019077590072356543
QEFHPRRR	8	Unmodified	_QEFHPRRR_					0	0	0			REV__ENST00000397786.6_1_17:60140558-60140627:-|nuORF	REV__ENST00000397786.6_1_17:60140558-60140627:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.3054809570312	2	563.304855	1124.59516	1.257	0.00070809	0.87418	0.00049243	2.1312	0.0012005	563.3053867478036	25.084	0.10773	25.084	25.044	25.152	0					5	3	2	0	0	0	0.79983	1	7510	7510		19.997	0.89325	1	42693	+		30443	18914	20891	20963	30834	30834					0.03784423611614329
QEFNQKRA	8	Unmodified	_QEFNQKRA_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2897644042969	2	510.764697	1019.51484	0.98361	0.00050239	3.7854	0.0019335	4.769	0.0024358	511.2684024802321	13.669	0.091639	13.669	13.624	13.716	0					4	2	2	0	0	0	0.68432	1	3157	3157		35.618	0.44007	1	45491			30444	1143	20892	20964	30835	30835					0.0058651749790215035
QEFPYKSEM	9	Unmodified	_QEFPYKSEM_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.7604370117188	2	579.760432	1157.50631	1.4247	0.00082599	-1.9927	-0.0011553	-0.56802	-0.00032932	579.759399928908	33.885	0.22755	33.885	33.782	34.009	0					10	6	2	0	0	0	0.47473	1	12588	12588		35.152	3.6222	1	104680			30445	2446	20893	20965	30836	30836					-0.06614217253604693
QEFQVNKL	8	Unmodified	_QEFQVNKL_					0	0	0		CCDC6|p.E316Yfs*13|1|0.04|ENSG00000108091|chr10:59806980-59806981|-/TTTGGTA|frameshift_variant;ENSG00000108091|ENST00000263102|CCDC6	CCDC6|p.E316Yfs*13|1|0.04|ENSG00000108091|chr10:59806980-59806981|-/TTTGGTA|frameshift_variant	CCDC6|p.E316Yfs*13|1|0.04|ENSG00000108091|chr10:59806980-59806981|-/TTTGGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.27178955078125	2	503.271824	1004.5291	0.7419	0.00037338	-1.086	-0.00054655	-0.34411	-0.00017318	503.27124525199656	34.069	0.30787	34.069	33.998	34.306	0					13	8	3	0	0	0	0.41701	1	12668	12668		68.787	4.5796	1	346210			30446	409	20894	20966	30837	30837					0.027011699261947797
QEFTLIKR	8	Unmodified	_QEFTLIKR_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.8051147460938	2	517.803291	1033.59203	1.5395	0.00079716	2.3645	0.0012244	3.904	0.0020215	517.8044102119193	13.242	0.10695	13.242	13.19	13.297	0					4	2	2	0	0	0	0.49216	1	3194	3194		60.972	2.19	1	400710	+		30447	16082	20895	20967	30838	30838					0.07657735714246883
QEFVSRTL	8	Unmodified	_QEFVSRTL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.263427734375	2	490.263999	978.513445	0.44552	0.00021842	-1.4932	-0.00073204	-1.0476	-0.00051362	490.2630711553639	31.509	0.098946	31.509	31.463	31.562	0					4	2	2	0	0	0	0.44767	1	11490	11490		64.207	8.7031	1	59806			30448	3791	20896	20968	30839	30839					0.023328834091557837
QEFVSRTL	8	Unmodified	_QEFVSRTL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2637023925781	2	490.263999	978.513445	-0.54062	-0.00026505	0.58976	0.00028914	0.049142	2.4092E-05	490.2640944047927	31.494	0.21636	31.494	31.37	31.586	0					9	4	3	0	0	0	0.62515	1	11784	11784		42.864	5.0528	1	207540			30449	3791	20896	20968	30840	30840					0.023328834091557837
QEFWADLNAMN	11	Unmodified	_QEFWADLNAMN_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP;TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.5321350097656	3	446.864289	1337.57104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.634	1	17.634	17.134	18.134	0								0	0	0	0.19994	1	4437	4437		63.426	9.0831	1				30450	5589	20897	20969	30841	30841					-0.08424642447607766
QEGAKMAVRL	10	Unmodified	_QEGAKMAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.2060852050781	3	368.206098	1101.59646	0.48049	0.00017692	-0.48204	-0.00017749	-0.0015511	-5.7113E-07	368.20590777267995	26.594	0.22069	26.594	26.508	26.729	0					13	7	2	0	0	0	0.56063	1	8094	8094		38.754	0.94209	1	473690			30451	6049;6450	20898	20970	30842	30842					0.04972876865485887
QEGAKMAVRL	10	Unmodified	_QEGAKMAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.80517578125	2	551.805508	1101.59646	1.3104	0.00072308	-1.4164	-0.00078158	-0.106	-5.8493E-05	551.8049589353485	26.589	0.16463	26.589	26.522	26.687	0					13	5	3	0	0	0	0.46989	1	8089	8089		36.447	18.979	1	285940			30452	6049;6450	20898	20970	30843	30843					0.04972876865485887
QEGAKMAVRL	10	Unmodified	_QEGAKMAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.2060546875	3	368.206098	1101.59646	0.76285	0.00028089	-0.86923	-0.00032006	-0.10638	-3.9168E-05	368.20586350236147	26.849	0.50526	26.849	26.715	27.221	0					33	12	5	0	0	0	0.44292	1	9307	9307		51.528	3.5682	1	5066300			30453	6049;6450	20898	20970	30844	30844					0.04972876865485887
QEGAKMAVRL	10	Unmodified	_QEGAKMAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.8048095703125	2	551.805508	1101.59646	0.59469	0.00032815	-0.68138	-0.00037599	-0.08669	-4.7836E-05	551.8054469991297	26.844	0.35282	26.844	26.657	27.01	0					21	8	4	0	0	0	0.03057	1	9301	9301		106.68	46.565	1	2809600			30454	6049;6450	20898	20970	30845	30845					0.04972876865485887
QEGAKMAVRL	10	Unmodified	_QEGAKMAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8058471679688	2	551.805508	1101.59646	1.62	0.0008939	-1.2906	-0.00071215	0.32936	0.00018174	551.8049716574343	26.87	0.31095	26.87	26.761	27.072	0					20	6	4	0	0	0	0.0083517	1	9654	9654		129.42	17.01	1	2603400			30455	6049;6450	20898	20970	30846	30846					0.04972876865485887
QEGAKMAVRL	10	Unmodified	_QEGAKMAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.8062744140625	2	551.805508	1101.59646	-1.3101	-0.00072291	2.635	0.001454	1.325	0.00073112	551.8068632358205	26.658	0.2364	26.658	26.539	26.776	0					12	5	3	0	0	0	0.24329	1	8610	8610		52.937	10.541	1	308870			30456	6049;6450	20898	20970	30847	30847					0.04972876865485887
QEGAKMAVRL	10	Unmodified	_QEGAKMAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.2061767578125	3	368.206098	1101.59646	-0.20258	-7.4593E-05	0.43723	0.00016099	0.23464	8.6397E-05	368.20632163725793	26.813	0.56737	26.813	26.705	27.272	0					26	11	4	0	0	0	0.5155	1	9505	9505		43.651	8.4988	1	4164600			30457	6049;6450	20898	20970	30848	30848					0.04972876865485887
QEGAYYSLPS	10	Unmodified	_QEGAYYSLPS_					0	0	0		ERAL1|p.R115Sfs*53|1|0.33|ENSG00000132591|chr17:28856322-28856323|-/T|frameshift_variant	ERAL1|p.R115Sfs*53|1|0.33|ENSG00000132591|chr17:28856322-28856323|-/T|frameshift_variant	ERAL1|p.R115Sfs*53|1|0.33|ENSG00000132591|chr17:28856322-28856323|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7548828125	2	557.756204	1113.49785	0.11891	6.6324E-05	-1.6823	-0.00093831	-1.5634	-0.00087199	557.7553134592608	17.072	0.41671	17.072	16.896	17.312	0					19	14	2	0	0	0	0.55603	1	4184	4184		39.253	0.49923	1	44526			30458	11111	20899	20971	30849	30849					-0.054354478985715104
QEGDKILSV	9	Unmodified	_QEGDKILSV_					0	0	0		ENSG00000213463|ENST00000256366|SYNJ2BP	ENSG00000213463|ENST00000256366|SYNJ2BP	ENSG00000213463|ENST00000256366|SYNJ2BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7688293457031	2	494.769114	987.523675	-0.04233	-2.0944E-05	1.5463	0.00076508	1.504	0.00074414	494.7689775269478	33.64	0.4589	33.64	33.358	33.817	0					24	11	3	0	0	0	0.1424	1	12894	12894		69.628	8.6557	1	295270			30459	7789	20900	20972	30850	30850					0.029414463437319682
QEGIVHVL	8	Unmodified	_QEGIVHVL_					0	0	0		PPARA|p.M430Wfs*8|1|0.27|ENSG00000186951|chr22:46235256-46235256|A/-|frameshift_variant;ENSG00000186951|ENST00000407236|PPARA	PPARA|p.M430Wfs*8|1|0.27|ENSG00000186951|chr22:46235256-46235256|A/-|frameshift_variant	PPARA|p.M430Wfs*8|1|0.27|ENSG00000186951|chr22:46235256-46235256|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7561340332031	2	447.75581	893.497067	0.071317	3.1932E-05	0.77641	0.00034764	0.84772	0.00037957	447.7562186954215	36.191	0.13108	36.191	36.106	36.237	0					5	3	2	0	0	0	0.39542	1	13639	13639		71.378	30.805	1	78694			30460	7173	20901	20973	30851	30851					0.04605802243054313
QEGKHVIGL	9	Unmodified	_QEGKHVIGL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.77978515625	2	490.779816	979.545079	-1.2585	-0.00061766	0.96206	0.00047216	-0.29647	-0.0001455	490.78027621246054	24.105	0.27172	24.105	24.018	24.29	0					20	8	4	0	0	0	0.45358	1	7345	7345		37.159	2.9866	1	342790			30461	4896	20902	20974	30852	30852					0.054488761630864246
QEGKHVIGL	9	Unmodified	_QEGKHVIGL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7796630859375	2	490.779816	979.545079	-0.093246	-4.5763E-05	-0.21742	-0.00010671	-0.31067	-0.00015247	490.77971378340936	24.159	0.23401	24.159	24.078	24.312	0					10	5	3	0	0	0	0.23186	1	7487	7487		57.811	6.4758	1	289280			30462	4896	20902	20974	30853	30853					0.054488761630864246
QEGTHTRQQ	9	Unmodified	_QEGTHTRQQ_					0	0	0			REV__ZNF37A|p.K269Q|1|0.24|ENSG00000075407|chr10:38117956-38117956|A/C|missense_variant	REV__ZNF37A|p.K269Q|1|0.24|ENSG00000075407|chr10:38117956-38117956|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7623901367188	2	542.760143	1083.50573	3.602	0.001955	0.55154	0.00029935	4.1536	0.0022544	542.7604428615717	13.646	0.25898	13.646	13.589	13.848	0					11	5	3	0	0	0	0.27123	1	3228	3228		37.812	0	1	1667300	+		30463	22320	20903	20975	30854	30854					-0.032678758584324896
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.7991943359375	2	561.798737	1121.58292	1.2738	0.0007156	-0.65361	-0.0003672	0.62015	0.0003484	561.7983652945726	36.499	0.19983	36.499	36.422	36.622	0					24	10	3	0	0	0	0.098791	1	11962	11962		79.713	7.8351	1	692810			30464	4438;562	20904	20976	30855	30855					0.026993423579142473
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.7988891601562	2	561.798737	1121.58292	0.47052	0.00026434	0.013136	7.3796E-06	0.48366	0.00027172	561.7987304312303	36.781	0.43981	36.781	36.702	37.142	0					25	12	3	0	0	0	0.087861	1	13887	13887		82.241	6.0708	1	2137000			30465	4438;562	20904	20976	30856	30856					0.026993423579142473
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7991943359375	2	561.798737	1121.58292	3.4701	0.0019495	-4.2967	-0.0024139	-0.82662	-0.00046439	561.7970522543634	36.707	0.95389	36.707	36.596	37.55	0					41	19	4	0	0	0	0.019882	1	14298	14298		122.18	4.3649	1	3442800			30466	4438;562	20904	20976	30857	30857					0.026993423579142473
QEHQGHQTF	9	Unmodified	_QEHQGHQTF_					0	0	0		TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22;ENST00000480395.5_1_11:5717822-5718591:+|nuORF;ENST00000460454.1_1_11:5717462-5717939:+|nuORF	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.25	2	556.249412	1110.48427	0.11521	6.4085E-05	0.74925	0.00041677	0.86446	0.00048085	556.2497593625038	15.984	0.092173	15.984	15.928	16.02	0					5	3	2	0	0	0	0.48623	1	3743	3743		33.922	1.1092	1	59841			30467	23060	20905	20977	30858	30858					-0.06655260887146142
QEHQGHQTF	9	Unmodified	_QEHQGHQTF_					0	0	0		TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22;ENST00000480395.5_1_11:5717822-5718591:+|nuORF;ENST00000460454.1_1_11:5717462-5717939:+|nuORF	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2496337890625	2	556.249412	1110.48427	1.6868	0.0009383	-1.1808	-0.00065681	0.50604	0.00028149	556.2486249503319	16.221	0.16829	16.221	16.162	16.331	0					6	3	2	0	0	0	0.3269	1	4608	4608		47.96	1.5027	1	812670			30468	23060	20905	20977	30859	30859					-0.06655260887146142
QEHREEKQ	8	Unmodified	_QEHREEKQ_					0	0	0			REV__TCHH|p.E430K|1|0.34|ENSG00000159450|chr1:152111929-152111929|C/T|missense_variant	REV__TCHH|p.E430K|1|0.34|ENSG00000159450|chr1:152111929-152111929|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2615966796875	2	542.262519	1082.51048	-1.4873	-0.00080649	-1.6524	-0.00089605	-3.1397	-0.0017025	542.2617469646593	25.382	0.32617	25.382	25.282	25.608	0					25	8	5	0	0	0	0.61938	1	8049	8049		45.952	1.5748	1	1832200	+		30469	21628	20906	20978	30860	30860					-0.027469917156622614
QEHYVAKLL	9	Unmodified	_QEHYVAKLL_					0	0	0			REV__XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	REV__XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8084716796875	2	550.808574	1099.60259	1.6642	0.00091668	-0.64066	-0.00035288	1.0236	0.0005638	550.8081791679734	38.71	0.4275	38.71	38.596	39.024	0					44	15	4	0	0	0	0.18416	1	15295	15295		76.774	7.1465	1	1766200	+		30470	12923	20907	20979	30861	30861					0.05677718368656315
QEIESVSTQM	10	Unmodified	_QEIESVSTQM_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.26708984375	2	576.266078	1150.5176	0.14974	8.6289E-05	0.63178	0.00036407	0.78152	0.00045036	576.2664751678395	35.89	0.16372	35.89	35.784	35.948	0					5	3	2	0	0	0	0.35046	1	13889	13889		61.691	15.719	1	98283			30471	4751	20908	20980	30862	30862					-0.051634399501153894
QEIIDSFR	8	Unmodified	_QEIIDSFR_					0	0	0			REV__ENSG00000221886|ENST00000408953|FAM200C	REV__ENSG00000221886|ENST00000408953|FAM200C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2633361816406	2	504.261456	1006.50836	-0.0085207	-4.2967E-06	3.1476	0.0015872	3.1391	0.0015829	504.2631450323582	19.041	0.15168	19.041	18.941	19.093	0					7	3	3	0	0	0	0.43813	1	5100	5100		45.952	0	1	134570	+		30472	17611	20909	20981	30863	30863					0.005365795465195333
QEIKGVQQR	9	Unmodified	_QEIKGVQQR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8104858398438	2	543.306729	1084.59891	0.3334	0.00018114	1.4414	0.00078312	1.7748	0.00096426	543.3074723386878	15.142	0.25051	15.142	14.996	15.246	0					28	11	3	0	0	0	0.37197	1	3366	3366		44.117	1.7207	1	137780			30473	3763	20910	20982	30864	30864					0.059990485947992056
QEILERTGV	9	Unmodified	_QEILERTGV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.788330078125	2	522.787838	1043.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.175	1	31.175	30.675	31.675	0								0	0	0	0.12601	1	11731	11731		65.465	2.1591	1				30474	2930	20911	20983	30865	30865					0.04108537609340601
QEILERTGV	9	Unmodified	_QEILERTGV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7880859375	2	522.787838	1043.56112	0.45051	0.00023552	-0.23314	-0.00012188	0.21737	0.00011364	522.7876095754702	31.128	0.21453	31.128	31.027	31.241	0					12	4	4	0	0	0	0.11411	1	11595	11595		76.17	3.2904	1	430360			30475	2930	20911	20983	30866	30866					0.04108537609340601
QEILQVEQQ	9	Unmodified	_QEILQVEQQ_					0	0	0		ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant;nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1	ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant	ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.790771484375	2	557.790578	1113.5666	1.7347	0.00096758	-3.176	-0.0017715	-1.4413	-0.00080394	557.7898475872645	25.144	0.5165	25.144	24.842	25.358	0					25	10	4	0	0	0	0.022525	1	8928	8928		117.81	10.931	1	984390			30476	873	20912	20984	30867	30867					0.014362164011345158
QEIMIPVSKA	10	Unmodified	_QEIMIPVSKA_					0	0	0		FUBP1|p.A194V|1|0.11|ENSG00000162613|chr1:77965124-77965124|G/A|missense_variant	FUBP1|p.A194V|1|0.11|ENSG00000162613|chr1:77965124-77965124|G/A|missense_variant	FUBP1|p.A194V|1|0.11|ENSG00000162613|chr1:77965124-77965124|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.811279296875	2	558.310092	1114.60563	1.802	0.0010061	-1.2892	-0.00071978	0.51276	0.00028628	558.8091518868225	13.9	0.089663	13.9	13.859	13.949	0					4	2	2	0	0	0	0.34979	1	3280	3280		33.922	0	1	103290			30477	11149	20913	20985	30868	30868					0.05291225431165003
QEITEQKEL	9	Unmodified	_QEITEQKEL_					0	0	0			REV__ENSG00000105063|ENST00000412770|PPP6R1	REV__ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2904052734375	2	559.290411	1116.56627	0.51617	0.00028869	-0.59943	-0.00033526	-0.083257	-4.6565E-05	559.2901404925301	23.131	0.45113	23.131	23.035	23.486	0					20	10	3	0	0	0	0.015496	1	7620	7620		129.42	0	1	890560	+		30478	13751	20914	20986	30869	30869					0.012647966812892264
QEITEQKEL	9	Unmodified	_QEITEQKEL_					0	0	0			REV__ENSG00000105063|ENST00000412770|PPP6R1	REV__ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.29052734375	2	559.290411	1116.56627	-0.10285	-5.7523E-05	0.010664	5.9644E-06	-0.092186	-5.1559E-05	559.2905910568379	23.036	0.21796	23.036	22.927	23.145	0					9	4	3	0	0	0	0.01873	1	7895	7895		124.08	6.269	1	446070	+		30479	13751	20914	20986	30870	30870					0.012647966812892264
QEKAFFAQL	9	Unmodified	_QEKAFFAQL_					0	0	0		ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF;nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	ENST00000477534.1_1_2:178098693-178128139:-|nuORF	ENST00000477534.1_1_2:178098693-178128139:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2886962890625	2	541.287474	1080.5604	2.0628	0.0011166	-1.3037	-0.00070567	0.7591	0.00041089	541.286926491719	44.034	0.26991	44.034	43.925	44.195	0					25	11	4	0	0	0	0.070005	1	17633	17633		93.195	7.836	1	226560			30480	2957	20915	20987	30871	30871					0.023337429602634074
QEKCLRPE	8	Unmodified	_QEKCLRPE_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7636413574219	2	501.755484	1001.49641	0.69398	0.00034821	0.43058	0.00021605	1.1246	0.00056426	501.7557405905802	17.622	0.20633	17.622	17.539	17.746	0					11	5	4	0	0	0	0.53424	1	5032	5032		56.721	1.2168	1	1677200			30481	1424	20916	20988	30872	30872					-0.0042736046831350905
QEKDKLLAA	9	Unmodified	_QEKDKLLAA_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;ENST00000554567.1_2_14:56046961-56101257:+|nuORF;KTN1|p.M404*|1|0.09|ENSG00000126777|chr14:55630084-55630085|-/AT|frameshift_variant;KTN1|p.M404Ifs*12|1|0.09|ENSG00000126777|chr14:55630085-55630086|-/ATAAACA|frameshift_variant	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.29241943359375	2	508.292756	1014.57096	-0.10984	-5.583E-05	0.13576	6.9007E-05	0.025923	1.3176E-05	508.2927494497435	14.819	0.11521	14.819	14.761	14.877	0					4	2	2	0	0	0	0.0406	1	3782	3782		98.629	0	1	229590			30482	3486	20917	20989	30873	30873					0.06425725614712974
QEKDTPYKE	9	Unmodified	_QEKDTPYKE_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-3|MIA3	REV__nc|ENSG00000154305|Q5JRA6-3|MIA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.27685546875	2	569.274761	1136.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.625	1	34.625	34.125	35.125	0								0	0	0	0.31785	1	13289	13289		31.53	0	1		+		30483	15565	20918	20990	30874	30874					-0.027837763527941206
QEKEEQHQL	9	Unmodified	_QEKEEQHQL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	584.7835083007812	2	584.783284	1167.55202	0.41148	0.00024063	0.40107	0.00023454	0.81255	0.00047517	584.7831625973695	16.034	0.13144	16.034	15.971	16.102	0					10	5	3	0	0	0	0.36135	1	3574	3574		37.812	0	1	169370			30484	2488	20919	20991	30875	30875					-0.025058557469947118
QEKEEQHQL	9	Unmodified	_QEKEEQHQL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.7833862304688	2	584.783284	1167.55202	0.043977	2.5717E-05	-0.2287	-0.00013374	-0.18472	-0.00010802	584.7833432536299	16.311	0.18175	16.311	16.225	16.407	0					10	4	3	0	0	0	0.014648	1	4402	4402		126.24	57.456	1	2093900			30485	2488	20919	20991	30876	30876					-0.025058557469947118
QEKEEQHQL	9	Unmodified	_QEKEEQHQL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	584.7843627929688	2	584.783284	1167.55202	-0.26799	-0.00015671	1.927	0.0011269	1.659	0.00097016	584.7841712980868	16.017	0.092471	16.017	15.982	16.074	0					6	3	2	0	0	0	0.13726	1	3768	3768		64.207	17.75	1	63131			30486	2488	20919	20991	30877	30877					-0.025058557469947118
QEKEEQHQL	9	Unmodified	_QEKEEQHQL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	584.783447265625	2	584.783284	1167.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.3	1	16.3	15.8	16.8	0								0	0	0	0.091378	1	4630	4630		67.494	3.2864	1				30487	2488	20919	20991	30878	30878					-0.025058557469947118
QEKEEQHQL	9	Unmodified	_QEKEEQHQL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	584.7833862304688	2	584.783284	1167.55202	-1.7251	-0.0010088	4.4563	0.002606	2.7312	0.0015971	584.784833375543	16.065	0.13971	16.065	16.014	16.154	0					10	4	3	0	0	0	0.029571	1	3734	3734		93.143	47.171	1	209480			30488	2488	20919	20991	30879	30879					-0.025058557469947118
QEKEKCKH	8	Unmodified	_QEKEKCKH_					0	0	0		ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.26416015625	2	515.260933	1028.50731	1.5004	0.00077307	4.0436	0.0020835	5.544	0.0028566	515.2636403010291	19.181	0.21402	19.181	19.031	19.245	0					10	4	3	0	0	0	0.37144	1	5897	5897		74.255	0.090034	1	1112300			30489	23146	20920	20992	30880	30880					-0.005799580940220039
QEKEQIKTL	9	Unmodified	_QEKEQIKTL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;CON__H-INV:HIT000292931;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000472924.1_1_3:160285772-160286174:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.8167114257812	2	558.816596	1115.61864	1.289	0.00072033	-0.75162	-0.00042002	0.53741	0.00030031	558.8161175060045	20.882	0.25885	20.882	20.808	21.067	0					19	8	4	0	0	0	0.21263	1	5648	5648		60.118	0	1	1495800		+	30490	11643	20921	20993	30881	30881					0.0654537981492922
QEKEQIKTL	9	Unmodified	_QEKEQIKTL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;CON__H-INV:HIT000292931;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000472924.1_1_3:160285772-160286174:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.8168334960938	2	558.816596	1115.61864	0.52378	0.0002927	0.067908	3.7948E-05	0.59169	0.00033064	558.8166207088722	21.212	0.39579	21.212	21.123	21.518	0					28	9	5	0	0	0	0.022525	1	6692	6692		117.81	0	1	13182000		+	30491	11643	20921	20993	30882	30882					0.0654537981492922
QEKEQIKTL	9	Unmodified	_QEKEQIKTL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;CON__H-INV:HIT000292931;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000472924.1_1_3:160285772-160286174:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.8169555664062	2	558.816596	1115.61864	0.12175	6.8037E-05	0.35538	0.00019859	0.47713	0.00026663	558.8167769301582	20.932	0.25672	20.932	20.814	21.071	0					23	8	5	0	0	0	0.048471	1	5902	5902		95.815	0	1	2695000		+	30492	11643	20921	20993	30883	30883					0.0654537981492922
QEKFRLAW	8	Unmodified	_QEKFRLAW_					0	0	0			REV__nc|ENSG00000005981|Q9Y574-2|ASB4	REV__nc|ENSG00000005981|Q9Y574-2|ASB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.8016967773438	2	539.295633	1076.57671	4.925	0.002656	2.6708	0.0014403	7.5958	0.0040964	539.297440999153	27.255	0.25898	27.255	27.171	27.43	0					21	9	4	0	0	0	0.58597	1	8652	8652		51.335	5.3835	1	304630	+		30493	12234	20922	20994	30884	30884					0.04148868917013715
QEKIKSEEI	9	Unmodified	_QEKIKSEEI_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENST00000478509.1_1_X:153674748-153677371:+|nuORF	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3008422851562	2	552.300778	1102.587	0.60856	0.00033611	-0.80402	-0.00044406	-0.19546	-0.00010795	552.3006326686918	25.335	0.60432	25.335	24.891	25.496	0					24	14	3	0	0	0	0.17854	1	8650	8650		64.207	0	1	341670			30494	1478	20923	20995	30885	30885					0.03981387060935049
QEKKEQKE	8	Unmodified	_QEKKEQKE_					0	0	0		nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant;nc|ENSG00000141519|Q4G0X9-2|CCDC40;CCDC40|p.K1058Nfs*21|1|0.06|ENSG00000141519|chr17:80097395-80097395|A/-|frameshift_variant;ENSG00000141519|ENST00000397545|CCDC40;ENST00000572253.5_1_17:78061344-78061689:+|nuORF	nc|ENSG00000141519|Q4G0X9-3|CCDC40	nc|ENSG00000141519|Q4G0X9-3|CCDC40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.77783203125	2	523.77747	1045.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.211	1	18.211	17.711	18.711	0								0	0	0	1.7419	1	5408	5408		79.713	0	1				30495	407	20924	20996	30886	30886					0.019439472296880922
QEKKIRAA	8	Unmodified	_QEKKIRAA_					0	0	0		MAP3K4|p.N160Mfs*8|3|0.32|ENSG00000085511|chr6:161048744-161048744|A/-|frameshift_variant;MAP3K4|p.S178Ifs*9|1|0.42|ENSG00000085511|chr6:161048796-161048797|-/A|frameshift_variant;MAP3K4|p.N160Kfs*27|1|0.22|ENSG00000085511|chr6:161048743-161048744|-/A|frameshift_variant;MAP3K4|p.K177Nfs*30|3|0.18|ENSG00000085511|chr6:161048797-161048797|A/-|frameshift_variant;nc|ENSG00000085511|Q9Y6R4-2|MAP3K4;ENSG00000085511|ENST00000392142|MAP3K4	MAP3K4|p.N160Mfs*8|3|0.32|ENSG00000085511|chr6:161048744-161048744|A/-|frameshift_variant	MAP3K4|p.N160Mfs*8|3|0.32|ENSG00000085511|chr6:161048744-161048744|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2875671386719	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.555	1	21.555	21.055	22.055	0								0	0	0	1.7419	1	6868	6868		58.782	2.0609	1				30496	1729	20925	20997	30887	30887					0.0874858239999412
QEKKTLYV	8	Unmodified	_QEKKTLYV_					0	0	0			REV__ENST00000493553.1_1_1:150315777-150316738:+|nuORF	REV__ENST00000493553.1_1_1:150315777-150316738:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.78961181640625	2	504.78985	1007.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.805	1	31.805	31.305	32.305	0								0	0	0	1.7419	1	10994	10994		35.618	1.4457	1		+		30497	14189	20926	20998	30888	30888					0.06166627103038991
QEKKVVVYL	9	Unmodified	_QEKKVVVYL_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;CTSC|p.V126Gfs*3|1|0.2|ENSG00000109861|chr11:88312496-88312497|-/C|frameshift_variant;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;CTSC|p.F302Lfs*27|1|0.1|ENSG00000109861|chr11:88294495-88294496|-/A|frameshift_variant;CTSC|p.N427Kfs*9|1|0.09|ENSG00000109861|chr11:88294117-88294118|-/T|frameshift_variant;ENSG00000109861|ENST00000227266|CTSC	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3345336914062	2	553.334424	1104.6543	0.62178	0.00034405	-0.056201	-3.1098E-05	0.56557	0.00031295	553.3343114819534	29.731	0.44911	29.731	29.6	30.05	0					25	11	4	0	0	0	0.071197	1	10652	10652		87.754	18.967	1	1145400			30498	713	20927	20999	30889	30889					0.10615462062582992
QEKKVVVYL	9	Unmodified	_QEKKVVVYL_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;CTSC|p.V126Gfs*3|1|0.2|ENSG00000109861|chr11:88312496-88312497|-/C|frameshift_variant;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;CTSC|p.F302Lfs*27|1|0.1|ENSG00000109861|chr11:88294495-88294496|-/A|frameshift_variant;CTSC|p.N427Kfs*9|1|0.09|ENSG00000109861|chr11:88294117-88294118|-/T|frameshift_variant;ENSG00000109861|ENST00000227266|CTSC	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.3346557617188	2	553.334424	1104.6543	0.029462	1.6302E-05	0.70338	0.0003892	0.73284	0.00040551	553.3348238628636	29.736	0.31765	29.736	29.582	29.9	0					17	6	4	0	0	0	0.062676	1	11032	11032		90.777	37.425	1	634800			30499	713	20927	20999	30890	30890					0.10615462062582992
QEKLDEKKI	9	Unmodified	_QEKLDEKKI_					0	0	0			REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.5519104003906	3	377.552039	1129.63429	0.62646	0.00023652	-1.0376	-0.00039176	-0.41118	-0.00015524	377.55178144903647	16.81	0.9366	16.81	16.664	17.6	0					51	19	5	0	0	0	0.070005	1	4865	4865		88.177	0	1	33790000	+		30500	14861	20928	21000	30891	30891					0.07465666331927423
QEKLDEKKI	9	Unmodified	_QEKLDEKKI_					0	0	0			REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.8246459960938	2	565.824421	1129.63429	0.79314	0.00044878	-0.12551	-7.1014E-05	0.66763	0.00037776	565.8242426616122	16.598	0.62304	16.598	16.516	17.139	0					49	18	5	0	0	0	0.15593	1	4144	4144		68.846	3.6889	1	7335600	+		30501	14861	20928	21000	30892	30892					0.07465666331927423
QEKLEVTR	8	Unmodified	_QEKLEVTR_					0	0	0		CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant;CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7821960449219	2	501.782556	1001.55056	-0.55918	-0.00028059	-0.1972	-9.8953E-05	-0.75638	-0.00037954	501.7823690130206	16.154	0.11615	16.154	16.097	16.213	0					4	2	2	0	0	0	0.42778	1	4572	4572		67.494	3.2864	1	324890			30502	555	20929	21001	30893	30893					0.049845549548990675
QEKLFIQKL	9	Unmodified	_QEKLFIQKL_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant	nc|ENSG00000078304|Q13362-2|PPP2R5C;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.9007873535156	3	382.900891	1145.68084	0.098887	3.7864E-05	-0.14322	-5.4841E-05	-0.044338	-1.6977E-05	382.90082111744726	35.637	0.34452	35.637	35.558	35.903	0					13	9	2	0	0	0	0.085655	1	13383	13383		82.75	13.904	1	545580			30503	11440;11962	20930	21002	30894	30894					0.11383150953884069
QEKLQVAL	8	Unmodified	_QEKLQVAL_					0	0	0		TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22;ENST00000480395.5_1_11:5717822-5718591:+|nuORF;nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.77667236328125	2	464.776742	927.538931	0.70997	0.00032998	-1.2031	-0.00055916	-0.4931	-0.00022918	464.7761639803645	34.676	0.30823	34.676	34.522	34.83	0					11	6	2	0	0	0	0.29152	1	13302	13302		85.359	11.385	1	979680			30504	23060	20931	21003	30895	30895					0.07226357931563143
QEKQEKPL	8	Unmodified	_QEKQEKPL_					0	0	0		ZNF658|p.R91Q|1|0.1|ENSG00000274349|chr9:66917838-66917838|G/A|missense_variant	ZNF658|p.R91Q|1|0.1|ENSG00000274349|chr9:66917838-66917838|G/A|missense_variant	ZNF658|p.R91Q|1|0.1|ENSG00000274349|chr9:66917838-66917838|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2770080566406	2	500.277106	998.53966	1.089	0.00054481	-1.1893	-0.00059499	-0.10031	-5.0181E-05	500.2764385230744	16.788	0.46223	16.788	16.73	17.192	0					11	9	2	0	0	0	0.23367	1	4735	4735		120.62	5.162	1	1145200			30505	23170	20932	21004	30896	30896					0.04033152580609567
QEKQSTLKQ	9	Unmodified	_QEKQSTLKQ_					0	0	0			REV__ENSG00000162702|ENST00000367353|ZNF281	REV__ENSG00000162702|ENST00000367353|ZNF281	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2992553710938	2	545.29857	1088.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.279	1	15.279	14.779	15.779	0								0	0	0	0.38913	1	4145	4145		14.137	0	1		+		30506	15831	20933	21005	30897	30897					0.04183922638048898
QEKSRAKPQL	10	Unmodified	_QEKSRAKPQL_					0	0	0			REV__nc|ENSG00000171606|Q96GC6-3|ZNF274	REV__nc|ENSG00000171606|Q96GC6-3|ZNF274	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.8416137695312	2	592.840936	1183.66732	-0.029719	-1.7619E-05	1.0639	0.0006307	1.0341	0.00061308	592.8416378478908	18.586	0.11638	18.586	18.527	18.644	0					4	2	2	0	0	0	0.59255	1	5744	5744		23.523	0	1	223140	+		30507	16424	20934	21006	30898	30898					0.0828329317466796
QEKSVFCRI	9	Unmodified	_QEKSVFCRI_					0	0	0		PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1;PER1|p.L380Cfs*73|1|0.18|ENSG00000179094|chr17:8148093-8148093|G/-|frameshift_variant;PER1|p.L466*|1|0.14|ENSG00000179094|chr17:8147571-8147571|G/-|frameshift_variant;ENST00000579065.1_1_17:8052575-8052641:-|nuORF	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.2927856445312	2	555.292233	1108.56991	1.0626	0.00059007	0.11177	6.2065E-05	1.1744	0.00065214	555.2925089834606	28.118	0.31791	28.118	27.959	28.277	0					18	6	4	0	0	0	0.25716	1	10158	10158		54.776	1.4249	1	979290			30508	6755	20935	21007	30899	30899					0.019971879741660814
QEKTIEEQL	9	Unmodified	_QEKTIEEQL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.290283203125	2	559.290411	1116.56627	1.7729	0.00099159	-1.0533	-0.00058913	0.71959	0.00040246	559.2896084974512	30.905	0.22912	30.905	30.815	31.044	0					12	5	3	0	0	0	0.032052	1	11591	11591		107.01	10.974	1	666590			30509	11603	20936	21008	30900	30900					0.012647966812892264
QEKTIEEQL	9	Unmodified	_QEKTIEEQL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.290771484375	2	559.290411	1116.56627	1.09	0.00060963	-0.31171	-0.00017433	0.77831	0.0004353	559.2901434052055	30.678	0.11701	30.678	30.583	30.7	0					5	3	2	0	0	0	0.048471	1	10477	10477		95.815	5.2143	1	114040			30510	11603	20936	21008	30901	30901					0.012647966812892264
QEKTIEEQL	9	Unmodified	_QEKTIEEQL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.290771484375	2	559.290411	1116.56627	1.826	0.0010213	-1.21	-0.00067676	0.61599	0.00034452	559.2897881543557	30.823	0.45995	30.823	30.714	31.174	0					13	9	2	0	0	0	0.00324	1	11467	11467		167.23	23.342	1	775180			30511	11603	20936	21008	30902	30902					0.012647966812892264
QEKVQSALV	9	Unmodified	_QEKVQSALV_					0	0	0		SLC37A4|p.G256V|1|0.08|ENSG00000137700|chr11:119026954-119026954|C/A|missense_variant	SLC37A4|p.G256V|1|0.08|ENSG00000137700|chr11:119026954-119026954|C/A|missense_variant	SLC37A4|p.G256V|1|0.08|ENSG00000137700|chr11:119026954-119026954|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2847595214844	2	501.284931	1000.55531	-0.58	-0.00029075	0.36695	0.00018395	-0.21305	-0.0001068	501.28507951115785	34.116	0.27499	34.116	34.028	34.303	0					9	6	2	0	0	0	0.5741	1	13134	13134		24.519	3.5723	1	128020			30512	22411	20937	21009	30903	30903					0.05505439097657927
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.7484130859375	2	564.747521	1127.48049	1.4466	0.00081699	-0.65282	-0.00036868	0.79382	0.00044831	564.747362710463	28.936	0.15096	28.936	28.88	29.031	0					10	5	3	0	0	0	0.087861	1	9085	9085		82.241	25.519	1	131460			30513	3804	20938	21010	30904	30904					-0.07815111495892779
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.747802734375	2	564.747521	1127.48049	1.7759	0.0010029	-1.7562	-0.00099183	0.019667	1.1107E-05	564.7468009689157	29.209	0.24724	29.209	29.087	29.334	0					18	6	4	0	0	0	0.0040894	1	10401	10401		162.25	79.502	1	1227900			30514	3804	20938	21010	30905	30905					-0.07815111495892779
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.7481079101562	2	564.747521	1127.48049	0.13603	7.6824E-05	-0.35803	-0.0002022	-0.222	-0.00012537	564.7476988471992	28.963	0.1629	28.963	28.88	29.043	0					12	6	3	0	0	0	0.44593	1	9385	9385		37.812	11.119	1	179070			30515	3804	20938	21010	30906	30906					-0.07815111495892779
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.7477416992188	2	564.747521	1127.48049	1.8974	0.0010716	-1.9056	-0.0010762	-0.0081834	-4.6215E-06	564.7466263150666	29.204	0.19174	29.204	29.104	29.295	0					10	4	3	0	0	0	0.026538	1	10800	10800		112.41	59.474	1	935090			30516	3804	20938	21010	30907	30907					-0.07815111495892779
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.7489624023438	2	564.747521	1127.48049	1.4421	0.00081441	0.99667	0.00056286	2.4387	0.0013773	564.7480242878472	28.989	0.14985	28.989	28.893	29.042	0					5	3	2	0	0	0	0.36892	1	9706	9706		44.377	5.1244	1	139460			30517	3804	20938	21010	30908	30908					-0.07815111495892779
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.747802734375	2	564.747521	1127.48049	0.84427	0.0004768	-0.71649	-0.00040464	0.12778	7.2164E-05	564.747177854709	28.972	0.18483	28.972	28.88	29.064	0					9	4	3	0	0	0	0.078509	1	9700	9700		85.161	32.224	1	204580			30518	3804	20938	21010	30909	30909					-0.07815111495892779
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.7477416992188	2	564.747521	1127.48049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.142	1	29.142	28.642	29.642	0								0	0	0	0.0014292	1	10640	10640		146.79	73.906	1				30519	3804	20938	21010	30910	30910					-0.07815111495892779
QEKVSDYEM	9	Unmodified	_QEKVSDYEM_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.7476196289062	2	564.747521	1127.48049	1.7276	0.00097566	-1.8529	-0.0010464	-0.12528	-7.0749E-05	564.7466815865818	29.151	0.21484	29.151	29.043	29.258	0					13	4	4	0	0	0	0.16806	1	10636	10636		65.465	15.929	1	1479900			30520	3804	20938	21010	30911	30911					-0.07815111495892779
QELAKTKL	8	Unmodified	_QELAKTKL_					0	0	0		SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7841796875	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.633	1	19.633	19.133	20.133	0								0	0	0	1.7419	1	5116	5116		53.351	3.9099	1				30521	1112	20939	21011	30912	30912					0.08698644448600135
QELDLRIGCA	10	Unmodified	_QELDLRIGCA_					0	0	0		nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF	nc|ENSG00000100038|O95985-3|TOP3B	nc|ENSG00000100038|O95985-3|TOP3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.2862548828125	2	559.287148	1116.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.553	1	19.553	19.053	20.053	0								0	0	0	0.32313	1	5332	5332		51.193	11.94	1				30522	1967	20940	21012	30913	30913					0.0061258024893504626
QELEAENRL	9	Unmodified	_QELEAENRL_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;ENST00000487284.2_1_7:101917466-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2806396484375	2	551.280377	1100.5462	1.8286	0.0010081	-2.0802	-0.0011468	-0.25166	-0.00013874	551.279192291038	28.806	0.17181	28.806	28.73	28.902	0					9	4	3	0	0	0	0.040209	1	10216	10216		99.013	21.695	1	271750			30523	10693	20941	21013	30914	30914					-4.9542586793904775E-05
QELEAENRL	9	Unmodified	_QELEAENRL_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;ENST00000487284.2_1_7:101917466-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2809448242188	2	551.280377	1100.5462	1.8164	0.0010013	-1.203	-0.00066318	0.61341	0.00033816	551.2796092521872	28.75	0.16893	28.75	28.691	28.86	0					7	3	3	0	0	0	0.18416	1	10465	10465		63.534	6.8128	1	329790			30524	10693	20941	21013	30915	30915					-4.9542586793904775E-05
QELEIIRVY	9	Unmodified	_QELEIIRVY_					0	0	0		C1D|p.R89I|1|0.08|ENSG00000197223|chr2:68043049-68043049|C/A|missense_variant	C1D|p.R89I|1|0.08|ENSG00000197223|chr2:68043049-68043049|C/A|missense_variant	C1D|p.R89I|1|0.08|ENSG00000197223|chr2:68043049-68043049|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.8272705078125	2	581.826963	1161.63937	3.2362	0.0018829	-2.8066	-0.0016329	0.42965	0.00024998	581.8250843748862	34.905	0.1642	34.905	34.8	34.964	0					6	3	2	0	0	0	0.27249	1	13438	13438		52.937	1.744	1	1002900			30525	332	20942	21014	30916	30916					0.06501970194585738
QELEKAKR	8	Unmodified	_QELEKAKR_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENST00000465458.1_1_17:8409499-8413222:-|nuORF	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.290283203125	2	501.290548	1000.56654	0.43976	0.00022045	0.24226	0.00012144	0.68202	0.00034189	501.2908266748579	15.245	0.86997	15.245	15.144	16.014	0					67	35	5	0	0	0	0.24844	2	3257	3257;3400		93.195	10.363	1	31260000			30526	3829	20943	21015	30917;30918	30917					0.06628261191792717
QELEKAKR	8	Unmodified	_QELEKAKR_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENST00000465458.1_1_17:8409499-8413222:-|nuORF	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2906494140625	2	501.290548	1000.56654	0.67836	0.00034006	-0.048789	-2.4458E-05	0.62957	0.0003156	501.2911070338343	15.537	2.0296	15.537	15.328	17.357	0					116	49	5	0	0	0	0.28444	1	4007	4007		76.774	2.5191	1	171490000			30527	3829	20943	21015	30919	30919					0.06628261191792717
QELEKAKR	8	Unmodified	_QELEKAKR_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENST00000465458.1_1_17:8409499-8413222:-|nuORF	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2906494140625	2	501.290548	1000.56654	0.14702	7.37E-05	0.4494	0.00022528	0.59642	0.00029898	501.29090268936204	15.308	0.69102	15.308	15.13	15.821	0					61	24	5	0	0	0	0.25143	1	3395	3395		87.754	2.8388	1	39750000			30528	3829	20943	21015	30920	30920					0.06628261191792717
QELEKQRQL	9	Unmodified	_QELEKQRQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.32568359375	2	586.325119	1170.63569	-0.32489	-0.00019049	1.154	0.00067661	0.82909	0.00048612	586.3260520893127	20.125	0.11138	20.125	20.085	20.197	0					6	3	2	0	0	0	0.10506	1	5578	5578		78.264	10.77	1	188130			30529	6707	20944	21016	30921	30921					0.057193004207192644
QELEKQRQL	9	Unmodified	_QELEKQRQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.3253784179688	2	586.325119	1170.63569	1.4182	0.00083151	-1.0467	-0.00061373	0.37143	0.00021778	586.324653079508	20.322	0.21587	20.322	20.212	20.428	0					6	4	2	0	0	0	0.02953	1	6583	6583		109.48	24.318	1	999670			30530	6707	20944	21016	30922	30922					0.057193004207192644
QELFRLGEQK	10	Unmodified	_QELFRLGEQK_					0	0	0			REV__nc|ENSG00000100979|P55058-2|PLTP	REV__nc|ENSG00000100979|P55058-2|PLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	624.3410034179688	2	624.340769	1246.66699	0.42743	0.00026686	-0.14191	-8.8601E-05	0.28551	0.00017826	624.3406300468351	25.659	0.50353	25.659	25.548	26.051	0					16	8	4	0	0	0	0.3337	1	9021	9021		63.534	10.597	1	1329400	+		30531	13579	20945	21017	30923	30923					0.05351873454787892
QELGEKLQA	9	Unmodified	_QELGEKLQA_					0	0	0		FYCO1|p.K751Rfs*12|1|0.42|ENSG00000163820|chr3:45967082-45967083|-/TCTC|frameshift_variant;ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1	FYCO1|p.K751Rfs*12|1|0.42|ENSG00000163820|chr3:45967082-45967083|-/TCTC|frameshift_variant	FYCO1|p.K751Rfs*12|1|0.42|ENSG00000163820|chr3:45967082-45967083|-/TCTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2740173339844	2	508.274564	1014.53457	-0.5778	-0.00029368	0.3893	0.00019787	-0.1885	-9.5809E-05	508.2748349038414	34.036	0.34729	34.036	33.882	34.229	0					22	14	3	0	0	0	0.21263	1	11443	11443		60.118	6.7668	1	290160			30532	5612	20946	21018	30924	30924					0.02788848718000736
QELIKEKL	8	Unmodified	_QELIKEKL_					0	0	0			REV__ENST00000472469.5_2_3:59032898-59035347:-|nuORF	REV__ENST00000472469.5_2_3:59032898-59035347:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.8052978515625	2	500.8055	999.596446	-1.0743	-0.00053803	-0.79288	-0.00039708	-1.8672	-0.00093511	500.8059573809268	25.535	0.26324	25.535	25.392	25.655	0					16	9	2	0	0	0	0.24844	1	7912	7912		104.06	5.4274	1	399520	+		30533	19492	20947	21019	30925	30925					0.09663200137140393
QELIKIQR	8	Unmodified	_QELIKIQR_					0	0	0			REV__CCDC88A|p.T678Hfs*8|1|0.16|ENSG00000115355|chr2:55334789-55334789|T/-|frameshift_variant	REV__CCDC88A|p.T678Hfs*8|1|0.16|ENSG00000115355|chr2:55334789-55334789|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.3174438476562	2	514.316566	1026.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.608	1	22.608	22.108	23.108	0								0	0	0	1.7419	1	6681	6681		42.396	0	1		+		30534	12368	20948	21020	30926	30926					0.10633424605566688
QELKGLAQDK	10	Unmodified	_QELKGLAQDK_					0	0	0			REV__TRAF1|p.N275Kfs*8|1|0.26|ENSG00000056558|chr9:120911394-120911395|-/T|frameshift_variant	REV__TRAF1|p.N275Kfs*8|1|0.26|ENSG00000056558|chr9:120911394-120911395|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3145751953125	2	565.31422	1128.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.766	1	15.766	15.266	16.266	0								0	0	0	0.41253	1	3657	3657		26.693	0.62953	1		+		30535	13061	20949	21021	30927	30927					0.054724956721202034
QELKGVRLL	9	Unmodified	_QELKGVRLL_					0	0	0		nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000527039.1_1_11:209766-212514:+|nuORF;ENST00000526982.1_1_11:209264-210619:+|nuORF	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.332275390625	2	528.332216	1054.64988	2.1975	0.001161	-1.2806	-0.00067658	0.91688	0.00048442	528.33152512577	18.392	0.15118	18.392	18.294	18.445	0					10	3	4	0	0	0	0.24334	1	5361	5361		40.778	1.972	1	992610			30536	6692	20950	21022	30928	30928					0.12473997639654044
QELLIRTA	8	Unmodified	_QELLIRTA_					0	0	0			REV__ENSG00000179630|ENST00000325686|LACC1	REV__ENSG00000179630|ENST00000325686|LACC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.28192138671875	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.661	1	14.661	14.161	15.161	0								0	0	0	1.7419	1	3213	3213		29.15	0	1		+		30537	16785	20951	21023	30929	30929					0.07625760305847962
QELLKTEAL	9	Unmodified	_QELLKTEAL_					0	0	0		ENST00000595279.1_1_19:3959101-3961233:-|nuORF;ENSG00000167657|ENST00000545797|DAPK3	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7997436523438	2	522.800414	1043.58628	1.6581	0.00086685	-2.0158	-0.0010539	-0.35772	-0.00018702	522.7988988703432	36.098	0.16373	36.098	36.019	36.183	0					7	4	2	0	0	0	0.27249	1	13585	13585		52.937	5.0211	1	125710			30538	6013	20952	21024	30930	30930					0.06622592411895312
QELLVAARK	9	Unmodified	_QELLVAARK_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3168334960938	2	514.316566	1026.61858	-0.48369	-0.00024877	1.0035	0.00051612	0.51981	0.00026735	514.3170238008114	22.785	0.21713	22.785	22.628	22.845	0					6	4	2	0	0	0	0.28897	1	7775	7775		51.193	1.6567	1	355420	+		30539	13385	20953	21025	30931	30931					0.10633424605566688
QELQDLGIA	9	Unmodified	_QELQDLGIA_					0	0	0		ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000530561.5_1_11:58294929-58321330:-|nuORF	ENSG00000110031|ENST00000395074|LPXN	ENSG00000110031|ENST00000395074|LPXN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.76055908203125	2	493.761289	985.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.224	1	20.224	19.724	20.724	0								0	0	0	0.23445	1	5646	5646		45.972	0	1				30540	2604	20954	21026	30932	30932					0.01469159826649502
QELQDLNVR	9	Unmodified	_QELQDLNVR_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7971801757812	2	557.796195	1113.57784	0.119	6.6375E-05	1.5385	0.00085817	1.6575	0.00092454	557.7968284440864	27.133	0.15457	27.133	27.075	27.229	0					7	5	2	0	0	0	0.3269	1	8609	8609		40.778	11.629	1	105050	+		30541	21059	20955	21027	30933	30933					0.025590384952693057
QELQEKNKSLG	11	Unmodified	_QELQEKNKSLG_					0	0	0		ENST00000491507.1_1_3:75790944-75832513:-|nuORF	ENST00000491507.1_1_3:75790944-75832513:-|nuORF	ENST00000491507.1_1_3:75790944-75832513:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	637.342041015625	2	637.340966	1272.66738	3.0212	0.0019256	-1.9879	-0.001267	1.0333	0.00065858	637.3396610350007	11.442	0.18384	11.442	11.331	11.515	0					20	9	3	0	0	0	0.21704	1	2206	2206		72.243	17.521	1	180470			30542	10073	20956	21028	30934	30934					0.041952483839850174
QELQELNRV	9	Unmodified	_QELQELNRV_					0	0	0		ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.8042602539062	2	564.80402	1127.59349	0.13612	7.6882E-05	0.94539	0.00053396	1.0815	0.00061084	564.8043927771519	30.254	0.12337	30.254	30.193	30.316	0					10	4	3	0	0	0	0.095583	1	9922	9922		80.455	0	1	167010			30543	10024	20957	21029	30935	30935					0.03479325012312984
QELQELNRV	9	Unmodified	_QELQELNRV_					0	0	0		ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8041381835938	2	564.80402	1127.59349	1.8955	0.0010706	-1.2417	-0.00070133	0.65375	0.00036924	564.8032517160859	30.491	0.24873	30.491	30.4	30.649	0					9	5	2	0	0	0	0.032383	1	11399	11399		106.68	0	1	806290			30544	10024	20957	21029	30936	30936					0.03479325012312984
QELQELNRV	9	Unmodified	_QELQELNRV_					0	0	0		ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.8043212890625	2	564.80402	1127.59349	0.84	0.00047444	0.84455	0.00047701	1.6846	0.00095144	564.8041293307135	30.254	0.11613	30.254	30.186	30.302	0					7	3	3	0	0	0	0.16806	1	10290	10290		65.465	0	1	130240			30545	10024	20957	21029	30937	30937					0.03479325012312984
QELQELNRV	9	Unmodified	_QELQELNRV_					0	0	0		ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.3052978515625	2	564.80402	1127.59349	-1.0901	-0.00061567	1.7591	0.00099357	0.66908	0.0003779	564.805232848818	30.271	0.17614	30.271	30.21	30.386	0					7	4	2	0	0	0	0.076532	1	10284	10284		85.862	0	1	154680			30546	10024	20957	21029	30938	30938					0.03479325012312984
QELQELNRV	9	Unmodified	_QELQELNRV_					0	0	0		ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	ENST00000486498.1_1_2:171811278-171813015:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8042602539062	2	564.80402	1127.59349	3.4697	0.0019597	-3.5773	-0.0020204	-0.10759	-6.0767E-05	564.8022168249544	30.453	0.3001	30.453	30.261	30.561	0					9	6	2	0	0	0	0.19952	1	11296	11296		61.691	0	1	841350			30547	10024	20957	21029	30939	30939					0.03479325012312984
QELQKVQEL	9	Unmodified	_QELQKVQEL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8092041015625	2	557.808771	1113.60299	1.729	0.00096445	-1.2476	-0.00069595	0.48136	0.00026851	557.8078732799164	30.688	0.19156	30.688	30.59	30.782	0					8	4	2	0	0	0	0.037924	1	11509	11509		101.25	8.1094	1	495910			30548	2348	20958	21030	30940	30940					0.05073093297869491
QELQLKEA	8	Unmodified	_QELQLKEA_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENST00000368528.3_1_3:27674554-27675208:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7635803222656	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.791	1	26.791	26.291	27.291	0								0	0	0	1.7419	1	9285	9285		90.37	0	1				30549	8927	20959	21031	30941	30941					0.03265463689274384
QELQLQLS	8	Unmodified	_QELQLQLS_					0	0	0			REV__MYO15A|p.T3490S|1|0.6|ENSG00000091536|chr17:18173899-18173899|C/G|missense_variant	REV__MYO15A|p.T3490S|1|0.6|ENSG00000091536|chr17:18173899-18173899|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7635498046875	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.743	1	26.743	26.243	27.243	0								0	0	0	1.7419	1	9485	9485		66.962	0	1		+		30550	20909	20960	21032	30942	30942					0.032654636892857525
QELSLRPL	8	Unmodified	_QELSLRPL_					0	0	0		nc|ENSG00000146112|Q6NYC8-2|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18	nc|ENSG00000146112|Q6NYC8-2|PPP1R18	nc|ENSG00000146112|Q6NYC8-2|PPP1R18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2818908691406	2	478.282192	954.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.13	1	37.13	36.63	37.63	0								0	0	0	1.7419	1	14054	14054		40.778	1.5253	1				30551	4712	20961	21033	30943	30943					0.07073760305831911
QELTAAARPF	10	Unmodified	_QELTAAARPF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2;ENST00000466989.1_1_1:150463888-150464139:+|nuORF;ENST00000467982.6_1_1:150463888-150471031:+|nuORF	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2979736328125	2	552.29583	1102.57711	3.6728	0.0020285	0.76765	0.00042397	4.4404	0.0024524	552.2961155748064	38.517	0.77217	38.517	38.099	38.871	0					36	16	4	0	0	0	0.39647	1	15119	15119		52.937	52.937	1	2072000			30552	4545	20962	21034	30944	30944					0.029922438462108403
QEMELETKK	9	Unmodified	_QEMELETKK_					0	0	0			REV__ENST00000556211.1_1_14:35627286-35627364:-|nuORF	REV__ENST00000556211.1_1_14:35627286-35627364:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.2891845703125	2	568.286814	1134.55907	1.956	0.0011115	2.1446	0.0012188	4.1006	0.0023303	568.2882518078685	17.492	0.3128	17.492	17.388	17.701	0					11	6	3	0	0	0	0.095583	1	5217	5217		80.455	0	1	1041600	+		30553	20252	20963	21035	30945	30945					-0.0028225919077158323
QEMEVVKR	8	Unmodified	_QEMEVVKR_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7713928222656	2	509.771134	1017.52771	1.138	0.0005801	-1.185	-0.00060406	-0.047001	-2.396E-05	509.77068178770764	14.558	0.37148	14.558	14.349	14.721	0					19	9	3	0	0	0	0.67836	1	3524	3524		34.173	0.25091	1	186560	+		30554	16914	20964	21036	30946	30946					0.019652125657898978
QEMKFFIP	8	Unmodified	_QEMKFFIP_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant;DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.G2194Efs*14|1|0.34|ENSG00000158486|chr16:20997303-20997303|C/-|frameshift_variant;DNAH3|p.I2375Sfs*8|1|0.13|ENSG00000158486|chr16:20985619-20985619|T/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-2|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2703247070312	2	520.267696	1038.52084	1.4259	0.00074184	2.1206	0.0011033	3.5464	0.0018451	520.2690888018008	15.494	0.13399	15.494	15.45	15.584	0					6	3	2	0	0	0	0.57802	1	4046	4046		52.299	0.96372	1	200980			30555	5265	20965	21037	30947	30947					0.003118996852208511
QEMKPIQAK	9	Unmodified	_QEMKPIQAK_					0	0	0			REV__ENSG00000043093|ENST00000292782|DCUN1D1	REV__ENSG00000043093|ENST00000292782|DCUN1D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.1989440917969	3	358.198831	1071.57467	0.48535	0.00017385	-0.042697	-1.5294E-05	0.44265	0.00015856	358.19885940599636	21.388	0.17654	21.388	21.298	21.474	0					7	4	2	0	0	0	0.47038	1	6798	6798		51.193	17.271	1	339870	+		30556	13003	20966	21038	30948	30948					0.0417407211691625
QEMLNVHNL	9	Unmodified	_QEMLNVHNL_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ALG8|p.V133Wfs*24|3|0.31|ENSG00000159063|chr11:78121147-78121147|T/-|frameshift_variant;ALG8|p.R122Lfs*35|1|0.22|ENSG00000159063|chr11:78124024-78124024|C/-|frameshift_variant;nc|ENSG00000159063|Q9BVK2-2|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.274169921875	2	549.274041	1096.53353	1.8393	0.0010103	-3.5307	-0.0019393	-1.6914	-0.00092907	549.2724624034697	37.922	0.39258	37.922	37.596	37.988	0					15	8	2	0	0	0	0.27249	1	14885	14885		52.937	1.744	1	127570			30557	5295	20967	21039	30949	30949					-0.010876889225755804
QENDRVVMV	9	Unmodified	_QENDRVVMV_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant;TJP2|p.L79I|1|0.16|ENSG00000119139|chr9:69216459-69216459|C/A|missense_variant;ENST00000377259.5_2_9:71766567-71833305:+|nuORF;TJP2|p.R179Vfs*132|1|0.16|ENSG00000119139|chr9:69221074-69221074|G/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2720336914062	2	545.271498	1088.52844	1.8676	0.0010184	-1.7159	-0.00093564	0.1517	8.2716E-05	545.2708823898136	30.623	0.40208	30.623	30.526	30.928	0					18	9	3	0	0	0	0.13726	1	11067	11067		70.816	28.42	1	719720			30558	3100	20968	21040	30950	30950					-0.012279927851750472
QENDRVVMV	9	Unmodified	_QENDRVVMV_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant;TJP2|p.L79I|1|0.16|ENSG00000119139|chr9:69216459-69216459|C/A|missense_variant;ENST00000377259.5_2_9:71766567-71833305:+|nuORF;TJP2|p.R179Vfs*132|1|0.16|ENSG00000119139|chr9:69221074-69221074|G/-|frameshift_variant	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2724609375	2	545.271498	1088.52844	0.57223	0.00031202	-0.26592	-0.000145	0.30631	0.00016702	545.271454485278	30.586	0.30764	30.586	30.49	30.797	0					12	6	3	0	0	0	0.11898	1	11332	11332		75.043	32.647	1	641150			30559	3100	20968	21040	30951	30951					-0.012279927851750472
QENLSSNVN	9	Unmodified	_QENLSSNVN_					0	0	0		tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7375793457031	2	502.735803	1003.45705	2.927	0.0014715	0.55638	0.00027971	3.4833	0.0017512	502.7360635493255	32.648	0.21682	32.648	32.489	32.706	0					10	4	3	0	0	0	0.40353	1	12344	12344		41.427	6.2746	1	853780			30560	22885	20969	21041	30952	30952					-0.04453789218189286
QENNLLKTL	9	Unmodified	_QENNLLKTL_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8037719726562	2	536.803488	1071.59242	0.70868	0.00038042	0.062557	3.3581E-05	0.77124	0.000414	536.8035044907832	38.648	0.2303	38.648	38.578	38.809	0					30	13	3	0	0	0	0.10821	1	12592	12592		70.816	6.6089	1	935420			30561	2190	20970	21042	30953	30953					0.059491106434506946
QENNLLKTL	9	Unmodified	_QENNLLKTL_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8032836914062	2	536.803488	1071.59242	0.20608	0.00011063	0.56654	0.00030412	0.77262	0.00041475	536.8037635559361	39.002	0.47675	39.002	38.836	39.313	0					47	17	5	0	0	0	0.058553	1	14814	14814		96.034	0	1	3761600			30562	2190	20970	21042	30954	30954					0.059491106434506946
QENNLLKTL	9	Unmodified	_QENNLLKTL_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8036499023438	2	536.803488	1071.59242	0.2924	0.00015696	-0.032191	-1.728E-05	0.26021	0.00013968	536.803491840923	38.979	0.19459	38.979	38.855	39.05	0					10	6	2	0	0	0	0.16962	1	15317	15317		66.962	17.426	1	317210			30563	2190	20970	21042	30955	30955					0.059491106434506946
QENSRVIVM	9	Unmodified	_QENSRVIVM_					0	0	0		ENST00000511359.1_1_5:23303923-23304922:-|nuORF;nc|ENSG00000179295|Q06124-3|PTPN11;nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000179295|ENST00000351677|PTPN11;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000179295|Q06124-1|PTPN11;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2821044921875	2	538.281866	1074.54918	1.472	0.00079233	-0.62886	-0.00033851	0.84309	0.00045382	538.2814807224931	29.965	0.20507	29.965	29.868	30.073	0					16	7	3	0	0	0	0.35021	1	9496	9496		45.972	10.354	1	228860			30564	2686	20971	21043	30956	30956					0.014885975944935126
QENSRVIVM	9	Unmodified	_QENSRVIVM_					0	0	0		ENST00000511359.1_1_5:23303923-23304922:-|nuORF;nc|ENSG00000179295|Q06124-3|PTPN11;nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000179295|ENST00000351677|PTPN11;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000179295|Q06124-1|PTPN11;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2825317382812	2	538.281866	1074.54918	2.0438	0.0011001	-0.88958	-0.00047884	1.1542	0.0006213	538.2811854446743	30.248	0.29149	30.248	30.167	30.458	0					21	7	4	0	0	0	0.0792	1	10880	10880		84.916	28.194	1	1454300			30565	2686	20971	21043	30957	30957					0.014885975944935126
QENSRVIVM	9	Unmodified	_QENSRVIVM_					0	0	0		ENST00000511359.1_1_5:23303923-23304922:-|nuORF;nc|ENSG00000179295|Q06124-3|PTPN11;nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000179295|ENST00000351677|PTPN11;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000179295|Q06124-1|PTPN11;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2821044921875	2	538.281866	1074.54918	1.368	0.00073637	-0.90689	-0.00048816	0.4611	0.0002482	538.2814470026011	30.24	0.33151	30.24	30.148	30.479	0					16	7	3	0	0	0	0.14603	1	11275	11275		68.787	17.451	1	503430			30566	2686	20971	21043	30958	30958					0.014885975944935126
QENSRVIVM	9	Unmodified	_QENSRVIVM_					0	0	0		ENST00000511359.1_1_5:23303923-23304922:-|nuORF;nc|ENSG00000179295|Q06124-3|PTPN11;nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000179295|ENST00000351677|PTPN11;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000179295|Q06124-1|PTPN11;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2821655273438	2	538.281866	1074.54918	2.2187	0.0011943	-1.4253	-0.0007672	0.79347	0.00042711	538.2810587196401	30.039	0.15412	30.039	29.94	30.094	0					8	3	3	0	0	0	0.24095	1	10169	10169		56.721	14.325	1	179100			30567	2686	20971	21043	30959	30959					0.014885975944935126
QENSRVIVM	9	Unmodified	_QENSRVIVM_					0	0	0		ENST00000511359.1_1_5:23303923-23304922:-|nuORF;nc|ENSG00000179295|Q06124-3|PTPN11;nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000179295|ENST00000351677|PTPN11;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000179295|Q06124-1|PTPN11;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.282470703125	2	538.281866	1074.54918	0.69283	0.00037294	-0.055166	-2.9695E-05	0.63766	0.00034324	538.2817646110507	30.206	0.30951	30.206	30.099	30.408	0					20	6	4	0	0	0	0.048471	1	11141	11141		95.815	29.386	1	1334900			30568	2686	20971	21043	30960	30960					0.014885975944935126
QENVLQRV	8	Unmodified	_QENVLQRV_					0	0	0		PLIN1|p.P109Lfs*8|1|0.27|ENSG00000166819|chr15:89671489-89671489|G/-|frameshift_variant;ENSG00000166819|ENST00000300055|PLIN1	PLIN1|p.P109Lfs*8|1|0.27|ENSG00000166819|chr15:89671489-89671489|G/-|frameshift_variant	PLIN1|p.P109Lfs*8|1|0.27|ENSG00000166819|chr15:89671489-89671489|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2769470214844	2	493.274898	984.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.462	1	40.462	39.962	40.962	0								0	0	0	1.7419	1	15423	15423		56.721	3.7844	1				30569	5929	20972	21044	30961	30961					0.04235688157723416
QEPGENSEIL	10	Unmodified	_QEPGENSEIL_					0	0	0		ENST00000517973.1_1_5:150400193-150407688:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000517973.1_1_5:150400193-150407688:+|nuORF	ENST00000517973.1_1_5:150400193-150407688:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.2667846679688	2	558.264393	1114.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.763	1	13.763	13.263	14.263	0								0	0	0	0.4201	1	2872	2872		15.642	0.77694	1				30570	7772	20973	21045	30962	30962					-0.03844366732460003
QEPVTYTAI	9	Unmodified	_QEPVTYTAI_					0	0	0		nc|ENSG00000158966|Q5VU97-2|CACHD1;CACHD1|p.Q1185Sfs*23|1|0.37|ENSG00000158966|chr1:64691433-64691434|-/C|frameshift_variant;ENSG00000158966|ENST00000651257|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2652282714844	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.602	1	36.602	36.102	37.102	0								0	0	0	0.15451	1	14266	14266		58.782	0.97068	1				30571	345	20974	21046	30963	30963					0.003340439694284214
QEQAAKAVL	9	Unmodified	_QEQAAKAVL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.27178955078125	2	479.271824	956.529095	0.47978	0.00022994	-0.72737	-0.00034861	-0.24759	-0.00011866	479.27140612569013	24.032	0.14742	24.032	23.932	24.079	0					8	3	3	0	0	0	0.023928	1	8024	8024		115.49	30.135	1	203050			30572	3620	20975	21047	30964	30964					0.04909169926179402
QEQAAKAVL	9	Unmodified	_QEQAAKAVL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.272216796875	2	479.271824	956.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.736	1	23.736	23.236	24.236	0								0	0	0	0.13137	1	7172	7172		64.207	0.901	1				30573	3620	20975	21047	30965	30965					0.04909169926179402
QEQAAKAVL	9	Unmodified	_QEQAAKAVL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2716979980469	2	479.271824	956.529095	-0.11515	-5.5189E-05	-0.38219	-0.00018317	-0.49734	-0.00023836	479.27163797319196	23.971	0.26619	23.971	23.864	24.13	0					8	5	2	0	0	0	0.0406	1	8316	8316		98.629	24.374	1	512760			30574	3620	20975	21047	30966	30966					0.04909169926179402
QEQAAKAVL	9	Unmodified	_QEQAAKAVL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2716369628906	2	479.271824	956.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.919	1	23.919	23.419	24.419	0								0	0	0	0.0095889	1	8178	8178		110.12	19.343	1				30575	3620	20975	21047	30967	30967					0.04909169926179402
QEQEQTAEPL	10	Unmodified	_QEQEQTAEPL_					0	0	0		nc|ENSG00000119725|Q86VK4-4|ZNF410;ZNF410|p.L434Sfs*8|1|0.04|ENSG00000119725|chr14:73923423-73923424|-/TCTATTT|frameshift_variant;ENSG00000119725|ENST00000555044|ZNF410;nc|ENSG00000119725|Q86VK4-5|ZNF410	nc|ENSG00000119725|Q86VK4-4|ZNF410	nc|ENSG00000119725|Q86VK4-4|ZNF410	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.5195007324219	3	391.519175	1171.5357	0.88022	0.00034462	-1.0493	-0.00041081	-0.16906	-6.619E-05	391.51904047510754	18.563	0.17918	18.563	18.516	18.695	0					11	4	4	0	0	0	0.63224	1	5468	5468		22.562	1.7244	1	343800			30576	3136	20976	21048	30968	30968					-0.04320981703745019
QEQIKQKGG	9	Unmodified	_QEQIKQKGG_					0	0	0			REV__DZIP1L|p.K200I|1|0.37|ENSG00000158163|chr3:138094971-138094971|T/A|missense_variant	REV__DZIP1L|p.K200I|1|0.37|ENSG00000158163|chr3:138094971-138094971|T/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2802429199219	2	508.28018	1014.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.747	1	18.747	18.247	19.247	0								0	0	0	0.19847	1	4717	4717		51.193	1.7511	1		+		30577	12759	20977	21049	30969	30969					0.03911670812158263
QEQLQLDL	8	Unmodified	_QEQLQLDL_					0	0	0			REV__ENSG00000166689|ENST00000531066|PLEKHA7	REV__ENSG00000166689|ENST00000531066|PLEKHA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.76092529296875	2	493.761289	985.508025	3.4436	0.0017003	-3.7661	-0.0018595	-0.32249	-0.00015923	493.7593081767009	20.132	0.11139	20.132	20.064	20.175	0					5	3	2	0	0	0	0.28427	1	5583	5583		87.754	0	1	51089	+		30578	16137	20978	21050	30970	30970					0.014691598266836081
QEQQVTIQ	8	Unmodified	_QEQQVTIQ_					0	0	0			REV__KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	REV__KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2510070800781	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.653	1	17.653	17.153	18.153	0								0	0	0	1.7419	1	5281	5281		42.864	2.0861	1		+		30579	13056	20979	21051	30971	30971					0.00027989166869701876
QEQSTRVKL	9	Unmodified	_QEQSTRVKL_					0	0	0		ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1	ENST00000082468.11_1_6:26405791-26410201:+|nuORF	ENST00000082468.11_1_6:26405791-26410201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.8090209960938	2	544.806562	1087.59857	3.7064	0.0020193	0.8243	0.00044908	4.5307	0.0024683	544.8069865841327	31.743	0.769	31.743	31.586	32.355	0					36	15	3	0	0	0	0.079477	1	11886	11886		88.177	13.922	1	3930400			30580	1134	20980	21052	30972	30972					0.05827628874953916
QEQSYFVRL	9	Unmodified	_QEQSYFVRL_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.302001953125	2	585.301113	1168.58767	0.059457	3.48E-05	0.38864	0.00022747	0.44809	0.00026227	585.8024323864986	41.942	0.19082	41.942	41.852	42.043	0					11	9	2	0	0	0	0.42902	1	15909	15909		39.253	3.6345	1	61111			30581	2347	20981	21053	30973	30973					0.010122265006657472
QEQSYFVRL	9	Unmodified	_QEQSYFVRL_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3018188476562	2	585.301113	1168.58767	3.2103	0.001879	-2.2059	-0.0012911	1.0044	0.00058788	585.2998924180635	41.871	0.29727	41.871	41.768	42.065	0					13	8	3	0	0	0	0.28897	1	16674	16674		51.193	1.6567	1	112800			30582	2347	20981	21053	30974	30974					0.010122265006657472
QEQTFQLLK	9	Unmodified	_QEQTFQLLK_					0	0	0		ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.8134155273438	2	567.811313	1133.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.965	1	15.965	15.465	16.465	0								0	0	0	0.27025	1	3684	3684		40.778	2.9666	1				30583	5730	20982	21054	30975	30975					0.04661397160452907
QEQTFQLLK	9	Unmodified	_QEQTFQLLK_					0	0	0		ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.8134155273438	2	567.811313	1133.60807	3.4708	0.0019707	0.27043	0.00015356	3.7412	0.0021243	567.8114990563226	16.123	0.11936	16.123	16.063	16.183	0					4	2	2	0	0	0	0.063823	1	4411	4411		90.37	15.327	1	908130			30584	5730	20982	21054	30976	30976					0.04661397160452907
QEQVAEPV	8	Unmodified	_QEQVAEPV_					0	0	0		ENST00000448507.5_1_4:7033675-7033846:+|nuORF	ENST00000448507.5_1_4:7033675-7033846:+|nuORF	ENST00000448507.5_1_4:7033675-7033846:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2687072753906	2	450.227082	898.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.051	1	15.051	14.551	15.551	0								0	0	0	1.7419	1	3883	3883		45.952	3.5558	1				30585	9633	20983	21055	30977	30977					-0.01367084753189829
QEQVKKLK	8	Unmodified	_QEQVKKLK_					0	0	0			REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.81121826171875	2	500.811116	999.60768	-0.99269	-0.00049715	0.75134	0.00037628	-0.24135	-0.00012087	500.8117010393282	14.947	0.072299	14.947	14.906	14.978	0					5	3	2	0	0	0	0.62915	1	3330	3330		44.377	3.599	1	106390	+		30586	17508	20984	21056	30978	30978					0.10786022231275183
QEQVKKLKV	9	Unmodified	_QEQVKKLKV_					0	0	0			REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3458862304688	2	550.345323	1098.67609	-1.4205	-0.00078175	2.0159	0.0011095	0.59547	0.00032772	550.3463665772207	17.266	0.11969	17.266	17.215	17.335	0					5	3	2	0	0	0	0.19605	1	4276	4276		62.107	5.3864	1	124910	+		30587	17508	20985	21057	30979	30979					0.1307026681113257
QEQVKQYAL	9	Unmodified	_QEQVKQYAL_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7960815429688	2	553.795663	1105.57677	1.819	0.0010074	-0.90191	-0.00049947	0.91712	0.0005079	553.7951303168337	29.369	0.32685	29.369	29.129	29.456	0					14	8	3	0	0	0	0.056004	1	10496	10496		93.143	23.516	1	214420			30588	2067	20986	21058	30980	30980					0.028208241263882883
QERAYIVQL	9	Unmodified	_QERAYIVQL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;ENST00000482693.1_1_11:64540804-64545891:-|nuORF;SF1|p.P74Lfs*63|1|0.43|ENSG00000168066|chr11:64773445-64773445|G/-|frameshift_variant;SF1|p.S182Lfs*2|1|0.29|ENSG00000168066|chr11:64769552-64769552|C/-|frameshift_variant;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-5|SF1;SF1|p.R46Q|1|0.32|ENSG00000168066|chr11:64776521-64776521|C/T|missense_variant	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.311279296875	2	560.31148	1118.60841	0.4964	0.00027814	-1.2382	-0.00069378	-0.74181	-0.00041564	560.3107067845456	39.928	0.23141	39.928	39.844	40.075	0					16	8	3	0	0	0	0.17854	1	15219	15219		64.207	7.4862	1	203800			30589	6055	20987	21059	30981	30981					0.05384816880314247
QERFTSMTR	9	Unmodified	_QERFTSMTR_					0	0	0		nc|ENSG00000117280|O14966-2|RAB29;ENSG00000117280|ENST00000367139|RAB29	nc|ENSG00000117280|O14966-2|RAB29	nc|ENSG00000117280|O14966-2|RAB29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.2820434570312	2	578.282397	1154.55024	-0.061088	-3.5326E-05	-0.032307	-1.8683E-05	-0.093396	-5.4009E-05	578.2823693940609	21.956	0.26494	21.956	21.854	22.119	0					16	6	3	0	0	0	0.19605	1	7064	7064		62.107	5.3864	1	1193300			30590	3029	20988	21060	30982	30982					-0.020851880366080877
QERGRDWGGQ	10	Unmodified	_QERGRDWGGQ_					0	0	0			REV__nc|ENSG00000167703|Q8N370-2|SLC43A2	REV__nc|ENSG00000167703|Q8N370-2|SLC43A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.7803955078125	2	594.778867	1187.54318	1.6367	0.00097347	0.93026	0.0005533	2.567	0.0015268	594.7794923943392	24.763	0.44708	24.763	24.565	25.012	0					25	9	4	0	0	0	0.48965	1	8594	8594		46.457	46.457	1	2584500	+		30591	20388	20989	21061	30983	30983					-0.04308784592808479
QERIAEQL	8	Unmodified	_QERIAEQL_					0	0	0			REV__ENSG00000164051|ENST00000395694|CCDC51	REV__ENSG00000164051|ENST00000395694|CCDC51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7665710449219	2	493.766906	985.519259	0.76798	0.0003792	-1.7952	-0.0008864	-1.0272	-0.0005072	493.7662361530527	26.821	0.40255	26.821	26.494	26.897	0					16	9	3	0	0	0	0.23527	1	9308	9308		133.81	4.13	1	607620	+		30592	15952	20990	21062	30984	30984					0.025919819208070294
QERLATAL	8	Unmodified	_QERLATAL_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;ENST00000473036.2_1_1:154145382-154155604:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF;ENST00000558400.1_1_15:63349204-63351954:+|nuORF;ENST00000391998.3_1_19:53982744-53982942:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2585754394531	2	451.258717	900.50288	0.65344	0.00029487	-0.59407	-0.00026808	0.059368	2.679E-05	451.25850390543667	29.488	0.50281	29.488	29.364	29.867	0					30	12	4	0	0	0	0.2451	1	10526	10526		110.12	12.647	1	3366400		+	30593	11631;11552;11562;11715	20991	21063	30985	30985					0.0486490075469419
QERLATAL	8	Unmodified	_QERLATAL_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;ENST00000473036.2_1_1:154145382-154155604:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF;ENST00000558400.1_1_15:63349204-63351954:+|nuORF;ENST00000391998.3_1_19:53982744-53982942:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2584533691406	2	451.258717	900.50288	0.70366	0.00031753	-1.0321	-0.00046574	-0.32844	-0.00014821	451.2582347177658	29.466	0.53534	29.466	29.282	29.818	0					30	11	6	0	0	0	0.2498	1	10923	10923		101.6	16.44	1	3456400		+	30594	11631;11552;11562;11715	20991	21063	30986	30986					0.0486490075469419
QERLATAL	8	Unmodified	_QERLATAL_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;ENST00000473036.2_1_1:154145382-154155604:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF;ENST00000558400.1_1_15:63349204-63351954:+|nuORF;ENST00000391998.3_1_19:53982744-53982942:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2585144042969	2	451.258717	900.50288	-0.12876	-5.8104E-05	-0.31552	-0.00014238	-0.44428	-0.00020048	451.25853883956904	29.261	0.30239	29.261	29.17	29.472	0					18	7	3	0	0	0	0.28427	1	9808	9808		87.754	8.0417	1	616810		+	30595	11631;11552;11562;11715	20991	21063	30987	30987					0.0486490075469419
QERLVSGV	8	Unmodified	_QERLVSGV_					0	0	0			REV__ENST00000600927.1_3_19:57904156-57904294:+|nuORF	REV__ENST00000600927.1_3_19:57904156-57904294:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.25054931640625	2	444.250892	886.48723	-0.36997	-0.00016436	-0.34312	-0.00015243	-0.71309	-0.00031679	444.2507288659785	21.956	0.22038	21.956	21.854	22.075	0					9	5	2	0	0	0	0.37144	1	7069	7069		74.255	12.148	1	531960	+		30596	20598	20992	21064	30988	30988					0.039446142376732496
QERLYEVY	8	Unmodified	_QERLYEVY_					0	0	0			REV__ZBTB37|p.I398Dfs*70|1|0.34|ENSG00000185278|chr1:173885799-173885800|-/G|frameshift_variant	REV__ZBTB37|p.I398Dfs*70|1|0.34|ENSG00000185278|chr1:173885799-173885800|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2755737304688	2	550.274564	1098.53457	1.8156	0.00099909	-0.30644	-0.00016863	1.5092	0.00083047	550.2743379418732	42.956	0.25084	42.956	42.868	43.119	0					16	7	3	0	0	0	0.63077	1	17155	17155		44.117	12.587	1	312480	+		30597	17017	20993	21065	30989	30989					-0.010751512820206699
QERMKAQL	8	Unmodified	_QERMKAQL_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;ENST00000553646.1_1_14:75375979-75376912:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2746276855469	2	502.271301	1002.52805	2.9259	0.0014696	4.1062	0.0020624	7.0321	0.003532	502.2734853708356	16.972	0.41705	16.972	16.859	17.276	0					14	8	3	0	0	0	0.3049	1	4819	4819		82.241	12.613	1	1992600			30598	7541	20994	21066	30990	30990					0.026886322856398692
QERQETQSSIV	11	Unmodified	_QERQETQSSIV_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;TRPM6|p.E1956Kfs*25|1|0.33|ENSG00000119121|chr9:74728308-74728308|C/-|frameshift_variant;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	652.8273315429688	2	652.82568	1303.63681	2.7912	0.0018222	0.1805	0.00011783	2.9717	0.00194	652.8258090761016	32.217	0.57316	32.217	31.984	32.557	0					31	11	4	0	0	0	0.60656	1	12103	12103		36.447	0.82846	1	843530			30599	3097	20995	21067	30991	30991					-0.0028653000103986415
QERRAVHRA	9	Unmodified	_QERRAVHRA_					0	0	0		ENST00000342584.3_1_5:471473-471785:-|nuORF	ENST00000342584.3_1_5:471473-471785:-|nuORF	ENST00000342584.3_1_5:471473-471785:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.8150024414062	2	561.815587	1121.61662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.591	1	10.591	10.091	11.091	0								0	0	0	0.36266	1	2042	2042		21.96	7.8228	1				30600	8740	20996	21068	30992	30992					0.06067808640318617
QERVQRLK	8	Unmodified	_QERVQRLK_					0	0	0		nc|ENSG00000289701|Q9H257-3|CARD9;nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9;ENST00000556340.1_1_9:139265151-139266545:-|nuORF	nc|ENSG00000289701|Q9H257-3|CARD9	nc|ENSG00000289701|Q9H257-3|CARD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.8179931640625	2	528.817264	1055.61998	2.2505	0.0011901	-1.6453	-0.00087006	0.60519	0.00032003	528.8163863956831	17.265	0.13369	17.265	17.224	17.357	0					8	3	3	0	0	0	0.63077	1	4869	4869		44.117	1.7207	1	343960			30601	7219	20997	21069	30993	30993					0.09439058694306368
QERYLLVR	8	Unmodified	_QERYLLVR_					0	0	0		ENSG00000140835|ENST00000539698|CHST4	ENSG00000140835|ENST00000539698|CHST4	ENSG00000140835|ENST00000539698|CHST4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.8147583007812	2	538.81419	1075.61383	2.1951	0.0011828	-0.59075	-0.0003183	1.6044	0.00086446	538.8139854975491	14.082	0.13022	14.082	13.997	14.128	0					9	5	2	0	0	0	0.53424	1	2917	2917		55.504	7.8469	1	148100			30602	4408	20998	21070	30994	30994					0.07904540462800469
QERYVLMDQGD	11	Oxidation (M)	_QERYVLM(Oxidation (M))DQGD_		QERYVLM(1)DQGD		QERYVLM(57)DQGD	0	0	1			REV__ENST00000437318.5_1_15:20588586-20648641:-|nuORF	REV__ENST00000437318.5_1_15:20588586-20648641:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	685.3082885742188	2	685.306266	1368.59798	1.41	0.00096627	1.3278	0.00090992	2.7377	0.0018762	685.3072117355565	15.519	0.11641	15.519	15.443	15.56	0					8	3	3	0	0	0	0.35352	1	3560	3560		56.632	10.66	1	587650	+		30603	19214	20999	21071	30995	30995		707			-0.07157578627084149
QESALPGI	8	Unmodified	_QESALPGI_					0	0	0			REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.71826171875	2	407.718893	813.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.949	1	14.949	14.449	15.449	0								0	0	0	1.7419	1	3162	3162		20.482	3.1169	1		+		30604	17003	21000	21072	30996	30996					0.009058340807087006
QESAPRRR	8	Unmodified	_QESAPRRR_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.27642822265625	2	500.275764	998.536974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.832	1	16.832	16.332	17.332	0								0	0	0	1.7419	1	4890	4890		85.359	0	1		+		30605	16227	21001	21073	30997	30997					0.037647419663244364
QESDGCAEV	9	Unmodified	_QESDGCAEV_					0	0	0			REV__ENST00000403496.6_1_1:32700614-32705489:-|nuORF	REV__ENST00000403496.6_1_1:32700614-32705489:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.1822509765625	2	469.182014	936.349476	-0.63201	-0.00029653	1.2049	0.00056533	0.5729	0.0002688	469.18252100378703	14.098	0.33769	14.098	13.924	14.262	0					19	8	3	0	0	0	0.47038	1	3371	3371		35.618	16.258	1	377740	+		30606	18958	21002	21074	30998	30998					-0.121245021439222
QESEARIQQL	10	Unmodified	_QESEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.3125610351562	2	601.312209	1200.60986	-0.21923	-0.00013182	0.90389	0.00054352	0.68466	0.0004117	601.3126710851386	28.766	0.25878	28.766	28.671	28.929	0					13	6	3	0	0	0	0.022799	1	10209	10209		123.21	13.73	1	610520			30607	1989	21003	21075	30999	30999					0.017584061784191363
QESEARIQQL	10	Unmodified	_QESEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.3134765625	2	601.312209	1200.60986	-0.58189	-0.0003499	1.0853	0.00065259	0.50338	0.00030269	601.3130389991369	28.525	0.18954	28.525	28.463	28.653	0					15	7	3	0	0	0	0.016791	1	9203	9203		127.46	42.546	1	242730			30608	1989	21003	21075	31000	31000					0.017584061784191363
QESEARIQQL	10	Unmodified	_QESEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.312255859375	2	601.312209	1200.60986	0.89689	0.00053931	-0.66078	-0.00039734	0.2361	0.00014197	601.3118746716549	28.803	0.21558	28.803	28.712	28.927	0					12	4	4	0	0	0	0.0077643	1	10595	10595		154.12	21.361	1	858440			30609	1989	21003	21075	31001	31001					0.017584061784191363
QESEARIQQL	10	Unmodified	_QESEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.3121337890625	2	601.312209	1200.60986	0.4658	0.00028009	-0.14377	-8.6449E-05	0.32203	0.00019364	601.3121014953065	28.562	0.13571	28.562	28.477	28.613	0					5	3	2	0	0	0	0.065778	1	9507	9507		104.01	13.413	1	115840			30610	1989	21003	21075	31002	31002					0.017584061784191363
QESEARIQQL	10	Unmodified	_QESEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.3124389648438	2	601.312209	1200.60986	-1.8779	-0.0011292	1.88	0.0011305	0.0021365	1.2847E-06	601.3135386727188	28.593	0.1697	28.593	28.506	28.675	0					10	4	3	0	0	0	0.21754	1	9500	9500		77.318	7.69	1	272320			30611	1989	21003	21075	31003	31003					0.017584061784191363
QESEARIQQL	10	Unmodified	_QESEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.31298828125	2	601.312209	1200.60986	2.1248	0.0012777	-1.1581	-0.0006964	0.9667	0.00058129	601.3116482844327	28.748	0.16854	28.748	28.641	28.809	0					11	3	4	0	0	0	0.014024	1	10462	10462		129.42	13.927	1	675930			30612	1989	21003	21075	31004	31004					0.017584061784191363
QESEERKLE	9	Unmodified	_QESEERKLE_					0	0	0		ENST00000394629.2_1_7:89843146-89845845:+|nuORF	ENST00000394629.2_1_7:89843146-89845845:+|nuORF	ENST00000394629.2_1_7:89843146-89845845:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.2854614257812	2	574.283117	1146.55168	3.3434	0.00192	1.0676	0.00061311	4.411	0.0025332	574.2837598145168	24.604	0.16492	24.604	24.496	24.661	0					5	3	2	0	0	0	0.28897	1	8521	8521		51.193	5.2407	1	670520			30613	9178	21004	21076	31005	31005					-0.015732754668533744
QESFIPLLQ	9	Unmodified	_QESFIPLLQ_					0	0	0			REV__ENSG00000121270|ENST00000356608|ABCC11	REV__ENSG00000121270|ENST00000356608|ABCC11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7985229492188	2	537.795132	1073.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.411	1	14.411	13.911	14.911	0								0	0	0	0.099216	1	3579	3579		71.877	4.3838	1		+		30614	14307	21005	21077	31006	31006					0.0418660975747116
QESLRYVY	8	Unmodified	_QESLRYVY_					0	0	0			REV__ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant	REV__ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2694091796875	2	529.269281	1056.52401	1.2272	0.00064951	0.068668	3.6344E-05	1.2959	0.00068585	529.2693556599698	32.62	0.16436	32.62	32.539	32.703	0					10	5	3	0	0	0	0.39542	1	11362	11362		71.378	0.082209	1	84198	+		30615	13333	21006	21078	31007	31007					-0.0019913393641672883
QESQGNTGLP	10	Unmodified	_QESQGNTGLP_					0	0	0		ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7517700195312	2	515.743628	1029.4727	0.16718	8.6221E-05	0.25357	0.00013078	0.42075	0.000217	515.7438374097497	18.393	0.51298	18.393	18.223	18.736	0					17	10	2	0	0	0	0.44601	1	5432	5432		51.193	1.7511	1	152610			30616	3534	21007	21079	31008	31008					-0.0408550270115029
QESQTTRSV	9	Unmodified	_QESQTTRSV_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2584228515625	2	518.256902	1034.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.904	1	15.904	15.404	16.404	0								0	0	0	0.11963	1	3714	3714		66.962	15.769	1				30617	4655	21008	21080	31009	31009					-0.016618138098010604
QESQTTRSV	9	Unmodified	_QESQTTRSV_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2571411132812	2	518.256902	1034.49925	1.5736	0.00081555	-2.4095	-0.0012488	-0.8359	-0.00043321	518.255871789179	16.14	0.21999	16.14	16.031	16.251	0					8	4	2	0	0	0	0.3269	1	4420	4420		47.96	2.0076	1	335550			30618	4655	21008	21080	31010	31010					-0.016618138098010604
QESQTTRSV	9	Unmodified	_QESQTTRSV_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.25732421875	2	518.256902	1034.49925	3.3388	0.0017304	-3.5435	-0.0018364	-0.20468	-0.00010607	518.2552574716593	16.123	0.21988	16.123	16.063	16.283	0					8	4	2	0	0	0	0.037924	1	4413	4413		101.25	10.476	1	407580			30619	4655	21008	21080	31011	31011					-0.016618138098010604
QESSKFPRI	9	Unmodified	_QESSKFPRI_					0	0	0			REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3012084960938	2	546.29583	1090.57711	0.3334	0.00018213	4.1706	0.0022784	4.504	0.0024605	546.2989621308117	24.164	0.26541	24.164	24.029	24.294	0					7	5	2	0	0	0	0.39215	1	8425	8425		42.396	1.618	1	125970	+		30620	17808	21009	21081	31012	31012					0.03544243846226891
QESSSEKAY	9	Unmodified	_QESSSEKAY_					0	0	0			REV__ENST00000572351.1_1_17:79555189-79563202:-|nuORF	REV__ENST00000572351.1_1_17:79555189-79563202:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7286376953125	2	514.730186	1027.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.456	1	36.456	35.956	36.956	0								0	0	0	0.15451	1	14199	14199		58.782	8.7574	1		+		30621	16884	21010	21082	31013	31013					-0.06680611312322071
QESTKQLTM	9	Unmodified	_QESTKQLTM_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;USP27X|p.N300D|1|0.79|ENSG00000273820|chrX:49881205-49881205|A/G|missense_variant;ENSG00000273820|ENST00000621775|USP27X;ENSG00000247746|ENST00000500968|USP51	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2667236328125	2	533.265881	1064.51721	1.0916	0.00058211	-0.72563	-0.00038695	0.36596	0.00019516	533.2655150834368	24.861	0.16164	24.861	24.762	24.924	0					7	3	3	0	0	0	0.13726	1	8744	8744		70.816	33.005	1	161770			30622	3371	21011	21083	31014	31014					-0.012468148793232103
QESVMQAR	8	Unmodified	_QESVMQAR_					0	0	0		ENST00000396987.7_1_8:41478536-41478953:+|nuORF	ENST00000396987.7_1_8:41478536-41478953:+|nuORF	ENST00000396987.7_1_8:41478536-41478953:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.73138427734375	2	474.732009	947.449465	3.629	0.0017228	-3.8239	-0.0018153	-0.19492	-9.2537E-05	474.73044535181214	21.496	0.19595	21.496	21.428	21.624	0					12	6	3	0	0	0	0.23367	1	6177	6177		120.62	5.1269	1	224790			30623	9212	21012	21084	31015	31015					-0.026362200194512297
QESVTKKDLGH	11	Unmodified	_QESVTKKDLGH_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.5556335449219	3	414.554331	1240.64116	2.8271	0.001172	0.75746	0.00031401	3.5846	0.001486	414.55465555985955	25.339	0.57384	25.339	25.076	25.65	0					31	11	4	0	0	0	0.60545	1	8868	8868		36.528	4.8936	1	1425000	+		30624	15637	21013	21085	31016	31016					0.030469792125359163
QETHLKQQL	9	Unmodified	_QETHLKQQL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.8071899414062	2	562.806562	1123.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.385	1	20.385	19.885	20.885	0								0	0	0	0.082437	1	5447	5447		76.774	15.802	1				30625	1717	21014	21086	31017	31017					0.04171628874951239
QETHLKQQL	9	Unmodified	_QETHLKQQL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.8069458007812	2	562.806562	1123.59857	0.44882	0.0002526	0.50114	0.00028204	0.94996	0.00053464	562.8068750185735	20.693	0.15709	20.693	20.642	20.799	0					9	3	4	0	0	0	0.056004	1	6472	6472		93.143	25.65	1	823680			30626	1717	21014	21086	31018	31018					0.04171628874951239
QETHLKQQL	9	Unmodified	_QETHLKQQL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.806640625	2	562.806562	1123.59857	0.070618	3.9744E-05	0.33352	0.00018771	0.40414	0.00022745	562.8066059597763	20.604	0.16711	20.604	20.546	20.713	0					9	3	4	0	0	0	0.13267	1	6716	6716		71.877	13.096	1	505560			30627	1717	21014	21086	31019	31019					0.04171628874951239
QETHLKQQL	9	Unmodified	_QETHLKQQL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	375.53997802734375	3	375.540134	1123.59857	0.46397	0.00017424	-0.91385	-0.00034319	-0.44988	-0.00016895	375.5397871417397	20.653	0.16711	20.653	20.546	20.713	0					6	3	2	0	0	0	0.47038	1	6717	6717		35.152	0	1	464810			30628	1717	21014	21086	31020	31020					0.04171628874951239
QETIRFVSE	9	Unmodified	_QETIRFVSE_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;REV__nc|ENSG00000151914|Q03001-3|DST	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7876586914062	2	554.785296	1107.55604	3.5834	0.001988	0.98073	0.0005441	4.5642	0.0025321	554.7855372897814	35.064	1.3623	35.064	34.651	36.013	0					76	27	4	0	0	0	0.13519	1	13609	13609		71.296	9.1883	1	915570	+		30629	12745;21064	21015	21087	31021	31021					0.006562337467130419
QETIRTAL	8	Unmodified	_QETIRTAL_					0	0	0		ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2638854980469	2	466.263999	930.513445	0.22146	0.00010326	-0.69394	-0.00032356	-0.47248	-0.0002203	466.2637744149401	29.397	0.13775	29.397	29.296	29.434	0					5	3	2	0	0	0	0.51384	1	10498	10498		58.782	0	1	77839			30630	2352	21016	21088	31022	31022					0.04540883409140406
QETLKHSGI	9	Unmodified	_QETLKHSGI_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.77423095703125	2	506.774731	1011.53491	-0.084392	-4.2768E-05	0.040937	2.0746E-05	-0.043455	-2.2022E-05	506.77475188539637	18.752	0.22955	18.752	18.678	18.907	0					12	6	3	0	0	0	0.0792	1	4709	4709		84.916	23.944	1	1203900			30631	5534	21017	21089	31023	31023					0.029602684378687627
QETLKHSGI	9	Unmodified	_QETLKHSGI_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7746276855469	2	506.774731	1011.53491	-0.037121	-1.8812E-05	-0.41463	-0.00021012	-0.45175	-0.00022894	506.7745353725583	19.08	0.17566	19.08	18.993	19.169	0					14	4	4	0	0	0	0.17854	1	5681	5681		64.207	2.0999	1	7081100			30632	5534	21017	21089	31024	31024					0.029602684378687627
QETRQLALRL	10	Unmodified	_QETRQLALRL_					0	0	0			REV__ENSG00000144747|ENST00000398559|TMF1	REV__ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.3619995117188	2	614.362036	1226.70952	0.35829	0.00022012	-0.39422	-0.00024219	-0.035926	-2.2072E-05	614.3618121043119	20.805	0.16599	20.805	20.747	20.913	0					8	3	3	0	0	0	0.36647	1	6810	6810		47.657	12.505	1	676750	+		30633	15242	21018	21090	31025	31025					0.10523268583006029
QETSPKKQL	9	Unmodified	_QETSPKKQL_					0	0	0			REV__ENST00000478204.5_1_1:33557816-33585780:+|nuORF	REV__ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7937622070312	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.947	1	23.947	23.447	24.447	0								0	0	0	0.19847	1	6997	6997		51.193	3.5354	1		+		30634	15162	21019	21091	31026	31026					0.05028824126384279
QETSPKKQL	9	Unmodified	_QETSPKKQL_					0	0	0			REV__ENST00000478204.5_1_1:33557816-33585780:+|nuORF	REV__ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7933349609375	2	529.795663	1057.57677	1.6302	0.00086366	-2.4707	-0.001309	-0.8405	-0.0004453	529.794397193712	24.221	0.31775	24.221	24.012	24.33	0					11	6	2	0	0	0	0.085655	1	8311	8311		82.75	15.257	1	2382600	+		30635	15162	21019	21091	31027	31027					0.05028824126384279
QETTYNLFT	9	Unmodified	_QETTYNLFT_					0	0	0		nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.845458984375	3	372.845111	1115.5135	0.78555	0.00029289	0.22052	8.222E-05	1.0061	0.00037511	372.8452095271265	26.677	0.76928	26.677	26.535	27.305	0					30	18	2	0	0	0	0.53083	1	9220	9220		29.17	29.17	1	1324300			30636	11834	21020	21092	31028	31028					-0.03963161381534519
QETTYVSNL	9	Unmodified	_QETTYVSNL_					0	0	0		ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1	ENSG00000198522|ENST00000610189|GPN1	ENSG00000198522|ENST00000610189|GPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7564086914062	2	527.756204	1053.49785	0.93024	0.00049094	-0.54698	-0.00028867	0.38326	0.00020227	527.7559408279631	38.132	0.22245	38.132	38.045	38.267	0					13	7	3	0	0	0	0.037924	1	14937	14937		101.25	0	1	118300			30637	7573	21021	21093	31029	31029					-0.026754478985594687
QETVEKFRQ	9	Unmodified	_QETVEKFRQ_					0	0	0		ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.8047485351562	2	582.80402	1163.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.125	1	16.125	15.625	16.625	0								0	0	0	0.091378	1	4307	4307		77.318	0	1				30638	4691	21022	21094	31030	31030					0.018233250123103062
QEVAIKQM	8	Unmodified	_QEVAIKQM_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.75439453125	2	473.754953	945.495352	0.26626	0.00012614	-1.8089	-0.00085699	-1.5427	-0.00073084	473.75444763296133	26.641	0.24008	26.641	26.535	26.775	0					10	5	3	0	0	0	0.37144	1	9225	9225		74.255	10.048	1	292640			30639	4872	21023	21095	31031	31031					0.020424251627900958
QEVAIKQM	8	Unmodified	_QEVAIKQM_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7550354003906	2	473.754953	945.495352	-0.12158	-5.7598E-05	0.0025726	1.2188E-06	-0.11901	-5.638E-05	473.754965680887	26.637	0.16788	26.637	26.526	26.694	0					6	3	2	0	0	0	0.41	1	9568	9568		69.628	5.4204	1	160570			30640	4872	21023	21095	31032	31032					0.020424251627900958
QEVAIKQM	8	Unmodified	_QEVAIKQM_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.75445556640625	2	473.754953	945.495352	-0.58807	-0.0002786	-0.58401	-0.00027668	-1.1721	-0.00055528	473.7552155247759	26.607	0.21957	26.607	26.502	26.722	0					9	4	3	0	0	0	0.25376	1	9409	9409		138.83	27.177	1	222490			30641	4872	21023	21095	31033	31033					0.020424251627900958
QEVASKAAVL	10	Unmodified	_QEVASKAAVL_					0	0	0		USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant;USP38|p.L816Hfs*13|1|0.05|ENSG00000170185|chr4:143214419-143214420|-/ATCATATGAAA|frameshift_variant;nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.29254150390625	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.13	1	27.13	26.63	27.63	0								0	0	0	0.2634	1	9441	9441		56.434	8.7765	1				30642	6215	21024	21096	31034	31034					0.06425725614712974
QEVDFPVKI	9	Unmodified	_QEVDFPVKI_					0	0	0			REV__ENSG00000142102|ENST00000409548|PGGHG	REV__ENSG00000142102|ENST00000409548|PGGHG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8009643554688	2	537.795132	1073.57571	1.9927	0.0010717	-4.4285	-0.0023816	-2.4358	-0.0013099	537.7928012794584	15.888	0.11587	15.888	15.832	15.947	0					4	2	2	0	0	0	0.028876	1	4275	4275		110.12	32.802	1	1201800	+		30643	15141	21025	21097	31035	31035					0.0418660975747116
QEVDVKEL	8	Unmodified	_QEVDVKEL_					0	0	0			REV__ENST00000558351.5_1_15:41556426-41571584:+|nuORF	REV__ENST00000558351.5_1_15:41556426-41571584:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2557678222656	2	480.25584	958.497126	0.67414	0.00032376	-0.63137	-0.00030322	0.042774	2.0542E-05	480.2554993019595	31.563	0.57909	31.563	31.332	31.911	0					36	12	4	0	0	0	0.29212	1	11882	11882		85.161	5.4482	1	1838600	+		30644	17119	21026	21098	31036	31036					0.01621757452392103
QEVGQVSV	8	Unmodified	_QEVGQVSV_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2221374511719	2	423.2218	844.429047	0.36293	0.0001536	0.16726	7.0788E-05	0.53018	0.00022439	423.2218655422634	31.997	0.25631	31.997	31.871	32.127	0					8	6	2	0	0	0	0.3049	1	11677	11677		82.241	15.811	1	84432			30645	4262	21027	21099	31037	31037					0.0006093259238468818
QEVGQVSV	8	Unmodified	_QEVGQVSV_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2217102050781	2	423.2218	844.429047	-0.24037	-0.00010173	-0.007977	-3.376E-06	-0.24834	-0.0001051	423.2216873207716	31.92	0.15477	31.92	31.861	32.015	0					6	3	2	0	0	0	0.35045	1	12093	12093		76.774	0	1	146390			30646	4262	21027	21099	31038	31038					0.0006093259238468818
QEVKVQTAAL	10	Unmodified	_QEVKVQTAAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3;KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant;KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8113403320312	2	543.811313	1085.60807	1.8772	0.0010209	-0.78248	-0.00042552	1.0947	0.00059533	543.8108363639521	29.838	0.17144	29.838	29.734	29.906	0					9	4	3	0	0	0	0.073361	1	10701	10701		101.46	28.581	1	210240			30647	2185	21028	21100	31039	31039					0.06869397160471635
QEVKVQTAAL	10	Unmodified	_QEVKVQTAAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3;KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant;KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8123168945312	2	543.811313	1085.60807	0.6004	0.0003265	1.2582	0.00068421	1.8586	0.0010107	543.8119706610904	29.756	0.21346	29.756	29.648	29.862	0					9	4	3	0	0	0	0.39827	1	10948	10948		56.434	3.0823	1	198790			30648	2185	21028	21100	31040	31040					0.06869397160471635
QEVLIKTV	8	Unmodified	_QEVLIKTV_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.28631591796875	2	465.286943	928.559333	-0.16933	-7.8786E-05	0.55424	0.00025788	0.38491	0.00017909	465.2872455636316	32.339	0.1599	32.339	32.25	32.41	0					10	4	3	0	0	0	0.61925	1	11226	11226		45.972	0	1	171360			30649	11716	21029	21101	31041	31041					0.09219528591381732
QEVLIKTV	8	Unmodified	_QEVLIKTV_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2866516113281	2	465.286943	928.559333	-0.49063	-0.00022828	0.063394	2.9496E-05	-0.42723	-0.00019879	465.2869404185261	32.531	0.56993	32.531	32.371	32.941	0					16	11	2	0	0	0	0.22109	1	12284	12284		129.42	17.01	1	1658900			30650	11716	21029	21101	31042	31042					0.09219528591381732
QEVLQQVL	8	Unmodified	_QEVLQQVL_					0	0	0		ENSG00000130590|ENST00000369886|SAMD10;ENST00000478694.1_1_20:62606865-62609703:-|nuORF	ENSG00000130590|ENST00000369886|SAMD10	ENSG00000130590|ENST00000369886|SAMD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7743225097656	2	478.7742	955.533846	0.88012	0.00042138	-1.5376	-0.00073616	-0.65748	-0.00031478	478.77334465195037	44.517	0.10941	44.517	44.429	44.538	0					7	4	2	0	0	0	0.51384	1	17827	17827		58.782	0	1	80468			30651	3652	21030	21102	31043	31043					0.054300540689382615
QEVPTMPQY	9	Unmodified	_QEVPTMPQY_					0	0	0			REV__ENSG00000187068|ENST00000335012|C3orf70	REV__ENSG00000187068|ENST00000335012|C3orf70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.756591796875	2	546.755149	1091.49575	1.8577	0.0010157	-1.0801	-0.00059053	0.77762	0.00042517	546.7546043256112	35.114	0.80784	35.114	34.772	35.58	0					37	21	3	0	0	0	0.47038	1	13189	13189		35.618	1.4457	1	187650	+		30652	17109	21031	21103	31044	31044					-0.04634199908014125
QEVTLYLTT	9	Unmodified	_QEVTLYLTT_					0	0	0			REV__ENST00000430584.1_2_7:77044973-77045093:-|nuORF	REV__ENST00000430584.1_2_7:77044973-77045093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2872314453125	2	534.284597	1066.55464	1.1396	0.00060887	2.9	0.0015494	4.0396	0.0021583	534.2864035669717	28.915	0.10676	28.915	28.88	28.987	0					5	3	2	0	0	0	0.51991	1	9087	9087		23.042	0	1	45345	+		30653	19160	21032	21104	31045	31045					0.02402599657943938
QEVVDGKVV	9	Unmodified	_QEVVDGKVV_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT20|p.V404M|1|0.22|ENSG00000171431|chr17:40876426-40876426|C/T|missense_variant	CON__P35900	CON__P35900	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7719421386719	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.29	1	26.29	25.79	26.79	0								0	0	0	0.33579	1	7971	7971		28.081	2.6313	1			+	30654	645	21033	21105	31046	31046					0.04185750206340799
QEVVDGKVV	9	Unmodified	_QEVVDGKVV_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT20|p.V404M|1|0.22|ENSG00000171431|chr17:40876426-40876426|C/T|missense_variant	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.77117919921875	2	486.771657	971.528761	0.37712	0.00018357	-0.86533	-0.00042122	-0.48821	-0.00023764	486.7711586360842	26.515	0.23389	26.515	26.423	26.657	0					8	5	2	0	0	0	0.047855	1	9146	9146		96.034	33.926	1	303400		+	30655	645	21033	21105	31047	31047					0.04185750206340799
QEVVDGKVV	9	Unmodified	_QEVVDGKVV_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT20|p.V404M|1|0.22|ENSG00000171431|chr17:40876426-40876426|C/T|missense_variant	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.77154541015625	2	486.771657	971.528761	3.4995	0.0017034	-3.5106	-0.0017088	-0.011085	-5.3957E-06	486.7700545629487	26.277	0.14938	26.277	26.216	26.366	0					6	4	2	0	0	0	0.11898	1	8240	8240		75.043	11.737	1	74925		+	30656	645	21033	21105	31048	31048					0.04185750206340799
QEVVDGKVV	9	Unmodified	_QEVVDGKVV_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT20|p.V404M|1|0.22|ENSG00000171431|chr17:40876426-40876426|C/T|missense_variant	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.77154541015625	2	486.771657	971.528761	-0.085055	-4.1402E-05	-0.40928	-0.00019922	-0.49433	-0.00024063	486.7714595509538	26.534	0.26754	26.534	26.426	26.694	0					12	5	4	0	0	0	0.0080613	1	9499	9499		145.16	54.379	1	833950		+	30657	645	21033	21105	31049	31049					0.04185750206340799
QEVVDGKVV	9	Unmodified	_QEVVDGKVV_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT20|p.V404M|1|0.22|ENSG00000171431|chr17:40876426-40876426|C/T|missense_variant	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.77154541015625	2	486.771657	971.528761	0.40858	0.00019889	0.46802	0.00022782	0.87661	0.00042671	486.7718802174285	26.361	0.15374	26.361	26.259	26.413	0					5	3	2	0	0	0	0.035062	1	8466	8466		104.06	35.27	1	103590		+	30658	645	21033	21105	31050	31050					0.04185750206340799
QEVVDGKVV	9	Unmodified	_QEVVDGKVV_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT20|p.V404M|1|0.22|ENSG00000171431|chr17:40876426-40876426|C/T|missense_variant	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7713317871094	2	486.771657	971.528761	-0.54505	-0.00026531	-0.046648	-2.2707E-05	-0.59169	-0.00028802	486.77170967938076	26.465	0.42321	26.465	26.349	26.772	0					17	8	4	0	0	0	0.02429	1	9362	9362		114.89	35.444	1	1225600		+	30659	645	21033	21105	31051	31051					0.04185750206340799
QEVYKYRT	8	Unmodified	_QEVYKYRT_					0	0	0			REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.782958984375	2	543.782556	1085.55056	0.60043	0.00032651	0.33561	0.0001825	0.93605	0.00050901	543.7825911363753	24.438	0.21756	24.438	24.33	24.547	0					10	4	3	0	0	0	0.49216	1	8440	8440		60.972	4.2509	1	472630	+		30660	21567	21034	21106	31052	31052					0.01120554954900399
QEWEAKQEKIK	11	Unmodified	_QEWEAKQEKIK_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENST00000478509.1_1_X:153674748-153677371:+|nuORF	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.25482177734375	3	472.920903	1415.74088	-0.5767	-0.00027273	-0.12842	-6.0732E-05	-0.70512	-0.00033346	472.9208399858175	33.509	1.4403	33.509	33.019	34.46	0					86	30	6	0	0	0	0.77859	1	12616	12616		19.627	0	1	21627000			30661	1478	21035	21107	31053	31053					0.049637968264505616
QEWEVKAL	8	Unmodified	_QEWEVKAL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.76678466796875	2	501.766374	1001.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.106	1	39.106	38.606	39.606	0								0	0	0	1.7419	1	15371	15371		51.335	7.2187	1				30662	7880	21036	21108	31054	31054					0.01749767551905279
QEWEVKAL	8	Unmodified	_QEWEVKAL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7660827636719	2	501.766374	1001.5182	-0.55089	-0.00027642	1.1324	0.00056822	0.58156	0.00029181	501.76693170075885	39.057	0.15945	39.057	38.981	39.141	0					8	3	3	0	0	0	0.42778	1	15407	15407		67.494	12.717	1	110380			30663	7880	21036	21108	31055	31055					0.01749767551905279
QEWFGSNPR	9	Unmodified	_QEWFGSNPR_					0	0	0			REV__ENSG00000167065|ENST00000334679|DUSP18	REV__ENSG00000167065|ENST00000334679|DUSP18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.76416015625	2	560.762155	1119.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.478	1	15.478	14.978	15.978	0								0	0	0	0.27939	1	3373	3373		39.253	1.4413	1		+		30664	16162	21037	21109	31056	31056					-0.04521786364716718
QEWLVKLE	8	Unmodified	_QEWLVKLE_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7891235351562	2	522.78985	1043.56515	1.5262	0.00079788	-3.0236	-0.0015807	-1.4974	-0.00078281	522.7881362079406	21.707	0.10319	21.707	21.648	21.751	0					5	3	2	0	0	0	0.46013	1	6034	6034		64.207	2.0999	1	44369	+		30665	14944	21038	21110	31057	31057					0.045106271030590506
QEYAQVIKM	9	Unmodified	_QEYAQVIKM_					0	0	0		ENSG00000173674|ENST00000379607|EIF1AX;ENSG00000198692|ENST00000361365|EIF1AY;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.287109375	2	555.286617	1108.55868	1.8134	0.0010069	-0.88386	-0.00049079	0.92951	0.00051614	555.2861922173255	36.321	0.29619	36.321	36.211	36.507	0					22	8	4	0	0	0	0.0406	1	13696	13696		98.629	37.657	1	842840			30666	6442;9776	21039	21111	31058	31058					0.00874365880008554
QEYAQVIKM	9	Unmodified	_QEYAQVIKM_					0	0	0		ENSG00000173674|ENST00000379607|EIF1AX;ENSG00000198692|ENST00000361365|EIF1AY;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.2869262695312	2	555.286617	1108.55868	1.6654	0.00092478	-1.1454	-0.00063602	0.52002	0.00028876	555.2860511860738	36.306	0.33694	36.306	36.172	36.509	0					22	9	4	0	0	0	0.070005	1	14126	14126		88.177	16.881	1	832030			30667	6442;9776	21039	21111	31059	31059					0.00874365880008554
QEYAQVIKM	9	Unmodified	_QEYAQVIKM_					0	0	0		ENSG00000173674|ENST00000379607|EIF1AX;ENSG00000198692|ENST00000361365|EIF1AY;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.287353515625	2	555.286617	1108.55868	1.1335	0.00062943	0.044864	2.4912E-05	1.1784	0.00065434	555.2866313127703	36.073	0.18773	36.073	35.98	36.167	0					13	6	3	0	0	0	0.33044	1	12900	12900		47.657	8.8512	1	159970			30668	6442;9776	21039	21111	31060	31060					0.00874365880008554
QEYAQVIKM	9	Unmodified	_QEYAQVIKM_					0	0	0		ENSG00000173674|ENST00000379607|EIF1AX;ENSG00000198692|ENST00000361365|EIF1AY;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENSG00000173674|ENST00000379607|EIF1AX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.2872924804688	2	555.286617	1108.55868	1.8219	0.0010117	-0.88063	-0.000489	0.94124	0.00052266	555.2863551600421	36.225	0.41373	36.225	36.115	36.529	0					23	8	4	0	0	0	0.023928	1	14067	14067		115.49	30.579	1	1553300			30669	6442;9776	21039	21111	31061	31061					0.00874365880008554
QEYHIQQNE	9	Unmodified	_QEYHIQQNE_					0	0	0		ENSG00000100575|ENST00000395159|TIMM9	ENSG00000100575|ENST00000395159|TIMM9	ENSG00000100575|ENST00000395159|TIMM9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.7692260742188	2	594.767634	1187.52072	3.1708	0.0018859	-0.27377	-0.00016283	2.897	0.001723	594.7673436382147	15.673	0.21831	15.673	15.513	15.731	0					8	4	3	0	0	0	0.55379	1	4197	4197		26.693	1.1189	1	1173200			30670	2043	21040	21112	31062	31062					-0.06554428781100796
QEYIGRSV	8	Unmodified	_QEYIGRSV_					0	0	0		RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2442321777344	2	476.248349	950.482145	-0.16159	-7.6959E-05	-1.8237	-0.00086853	-1.9853	-0.00094549	476.24713466303865	26.013	0.55887	26.013	25.734	26.293	0					21	15	2	0	0	0	0.66095	1	7817	7817		39.253	5.0803	1	135170			30671	7071	21041	21113	31063	31063					0.004923103750456903
QEYLKQLQ	8	Unmodified	_QEYLKQLQ_					0	0	0			REV__nc|ENSG00000143376|Q96L92-2|SNX27	REV__nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.286865234375	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.874	1	18.874	18.374	19.374	0								0	0	0	1.7419	1	5733	5733		133.81	18.319	1		+		30672	15187	21042	21114	31064	31064					0.032974390976505674
QEYVQEEE	8	Unmodified	_QEYVQEEE_					0	0	0			REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2210693359375	2	527.222194	1052.42983	0.57625	0.00030381	-1.0259	-0.00054087	-0.44964	-0.00023706	527.2216830084882	11.638	0.077709	11.638	11.588	11.665	0					11	3	4	0	0	0	0.78751	1	2179	2179		12.207	1.3413	1	515550	+		30673	16961	21043	21115	31065	31065					-0.09428317549236453
QFAAKLIQ	8	Unmodified	_QFAAKLIQ_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.T595Lfs*44|1|0.28|ENSG00000197694|chr9:128582823-128582823|A/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.77227783203125	2	459.774003	917.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.553	1	19.553	19.053	20.053	0								0	0	0	1.7419	1	5078	5078		47.916	0.25827	1				30674	7486	21044	21116	31066	31066					0.07138679139745818
QFAFRQAL	8	Unmodified	_QFAFRQAL_					0	0	0			REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant	REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7720031738281	2	490.769252	979.52395	2.674	0.0013123	2.469	0.0012117	5.143	0.002524	490.7705218875031	12.444	0.11103	12.444	12.371	12.482	0					5	3	2	0	0	0	0.68754	1	2650	2650		35.201	1.6851	1	291320	+		30675	17286	21045	21117	31067	31067					0.03336910854238795
QFAILLSY	8	Unmodified	_QFAILLSY_					0	0	0			REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.7696228027344	2	477.768386	953.522219	2.2287	0.0010648	0.63534	0.00030354	2.864	0.0013683	477.76861541711384	11.318	0.056595	11.318	11.281	11.337	0					6	3	2	0	0	0	0.74117	1	2180	2180		28.254	4.0515	1	191970	+		30676	16167	21046	21118	31068	31068					0.043598570456197194
QFANLIKHK	9	Unmodified	_QFANLIKHK_					0	0	0		ENST00000436625.1_1_7:63930096-63930567:+|nuORF	ENST00000436625.1_1_7:63930096-63930567:+|nuORF	ENST00000436625.1_1_7:63930096-63930567:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8265991210938	2	549.824558	1097.63456	0.22034	0.00012115	3.153	0.0017336	3.3733	0.0018547	549.8263909282747	14.066	0.11228	14.066	14.007	14.12	0					4	2	2	0	0	0	0.27249	1	3577	3577		45.952	16.782	1	297890			30677	9534	21047	21119	31069	31069					0.08965130842466351
QFAVALVIV	9	Unmodified	_QFAVALVIV_					0	0	0		CELSR1|p.I2343V|1|0.08|ENSG00000075275|chr22:46381907-46381907|T/C|missense_variant	CELSR1|p.I2343V|1|0.08|ENSG00000075275|chr22:46381907-46381907|T/C|missense_variant	CELSR1|p.I2343V|1|0.08|ENSG00000075275|chr22:46381907-46381907|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2976989746094	2	480.299853	958.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.215	1	34.215	33.715	34.715	0								0	0	0	0.32356	1	12091	12091		30.504	1.3541	1				30678	468	21048	21120	31070	31070					0.1042042283364708
QFCLTQGLF	9	Unmodified	_QFCLTQGLF_					0	0	0		nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7611694335938	2	528.762778	1055.511	1.2066	0.00063801	-4.4741	-0.0023657	-3.2675	-0.0017277	528.7606866127346	16.842	0.11785	16.842	16.778	16.896	0					7	5	2	0	0	0	0.30951	1	3916	3916		49.442	1.7842	1	87328			30679	11837	21049	21121	31071	31071					-0.014532883201809454
QFDHYLHCV	9	Unmodified	_QFDHYLHCV_					0	0	0			REV__ENST00000599145.1_1_19:58927017-58927281:+|nuORF	REV__ENST00000599145.1_1_19:58927017-58927281:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.2581176757812	2	581.260933	1160.50731	-0.34979	-0.00020332	-3.1351	-0.0018223	-3.4849	-0.0020257	581.2592951042127	10.983	0.10354	10.983	10.911	11.015	0					7	5	2	0	0	0	0.61124	1	2144	2144		17.365	1.7232	1	80123	+		30680	20587	21050	21122	31072	31072					-0.06651958094039401
QFDKRAAL	8	Unmodified	_QFDKRAAL_					0	0	0			REV__NTRK3|p.T578A|1|0.24|ENSG00000140538|chr15:87933169-87933169|T/C|missense_variant	REV__NTRK3|p.T578A|1|0.24|ENSG00000140538|chr15:87933169-87933169|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.766357421875	2	474.766709	947.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.293	1	25.293	24.793	25.793	0								0	0	0	1.7419	1	8959	8959		51.335	10.763	1		+		30681	15081	21051	21123	31073	31073					0.04300606991614586
QFDQIAASI	9	Unmodified	_QFDQIAASI_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7578125	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.964	1	29.964	29.464	30.464	0								0	0	0	0.29356	1	9799	9799		36.447	2.5251	1		+		30682	14995	21052	21124	31074	31074					0.001371771722460835
QFEAVKKK	8	Unmodified	_QFEAVKKK_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.29241943359375	2	489.292559	976.570566	-0.075134	-3.6762E-05	-0.37011	-0.00018109	-0.44524	-0.00021785	489.2924000875583	21.634	0.16607	21.634	21.526	21.692	0					6	3	2	0	0	0	0.24806	1	7216	7216		104.75	3.1458	1	283160	+		30683	12726	21053	21125	31075	31075					0.0813435068552053
QFEELVRPF	9	Unmodified	_QFEELVRPF_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;RAVER1|p.P366Qfs*169|1|0.32|ENSG00000161847|chr19:10322721-10322721|G/-|frameshift_variant;RAVER1|p.K358Sfs*177|2|0.26|ENSG00000161847|chr19:10323152-10323152|C/-|frameshift_variant;RAVER1|p.G303Afs*232|1|0.29|ENSG00000161847|chr19:10323417-10323417|G/-|frameshift_variant	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	388.8719177246094	3	388.873113	1163.59751	-1.2077	-0.00046964	-1.8727	-0.00072826	-3.0804	-0.0011979	388.8723091041822	32.98	0.16152	32.98	32.878	33.04	0					10	6	2	0	0	0	0.54267	1	11024	11024		27.882	0.83493	1	130670			30684	5427	21054	21126	31076	31076					0.02225414506051493
QFEYGAKVVYT	11	Unmodified	_QFEYGAKVVYT_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	652.826416015625	2	652.829703	1303.64485	-2.4185	-0.0015789	-1.2786	-0.0008347	-3.6971	-0.0024136	652.8286309128558	32.053	0.29218	32.053	31.911	32.203	0					13	8	2	0	0	0	0.75295	1	11081	11081		22.58	0.61977	1	106600		+	30685	650	21055	21127	31077	31077					0.005176489863742972
QFFVLIIQ	8	Unmodified	_QFFVLIIQ_					0	0	0		ENST00000443361.1_1_9:108285096-108287232:+|nuORF	ENST00000443361.1_1_9:108285096-108287232:+|nuORF	ENST00000443361.1_1_9:108285096-108287232:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2986755371094	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.603	1	50.603	50.103	51.103	0								0	0	0	1.7419	1	18942	18942		47.916	10.756	1				30686	9596	21056	21128	31078	31078					0.08212422833685196
QFGASVLK	8	Unmodified	_QFGASVLK_					0	0	0			REV__RAD51C|p.S105*|1|0.55|ENSG00000108384|chr17:58695099-58695099|C/-|frameshift_variant	REV__RAD51C|p.S105*|1|0.55|ENSG00000108384|chr17:58695099-58695099|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.2449035644531	2	425.245078	848.475603	-0.75272	-0.00032009	0.368	0.00015649	-0.38472	-0.0001636	425.24520340547286	25.954	0.51457	25.954	25.732	26.247	0					26	10	4	0	0	0	0.25102	1	8879	8879		99.375	1.9023	1	4915100	+		30687	13872	21057	21129	31079	31079					0.04530417214334648
QFGASVLK	8	Unmodified	_QFGASVLK_					0	0	0			REV__RAD51C|p.S105*|1|0.55|ENSG00000108384|chr17:58695099-58695099|C/-|frameshift_variant	REV__RAD51C|p.S105*|1|0.55|ENSG00000108384|chr17:58695099-58695099|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2447814941406	2	425.245078	848.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.747	1	25.747	25.247	26.247	0								0	0	0	1.7419	1	8231	8231		111.65	1.311	1		+		30688	13872	21057	21129	31080	31080					0.04530417214334648
QFGGRGRYGGR	11	Unmodified	_QFGGRGRYGGR_					0	0	0			REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8126831054688	2	605.813045	1209.61154	0.42942	0.00026015	-0.99799	-0.00060459	-0.56857	-0.00034444	605.8124564962752	26.551	0.21721	26.551	26.443	26.661	0					7	4	2	0	0	0	0.72154	1	9554	9554		25.574	3.6142	1	199080	+		30689	17807	21058	21130	31081	31081					0.01511504777704431
QFGNSSTSVLA	11	Unmodified	_QFGNSSTSVLA_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.7750244140625	2	555.774928	1109.5353	1.3051	0.00072534	-0.94941	-0.00052766	0.3557	0.00019769	555.7744417479497	30.257	0.10565	30.257	30.186	30.292	0					6	3	2	0	0	0	0.575	1	9628	9628		38.754	12.061	1	78950			30690	2265	21059	21131	31082	31082					-0.015083566329394671
QFHNKSDVL	9	Unmodified	_QFHNKSDVL_					0	0	0		tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2822265625	2	544.28018	1086.54581	0.36277	0.00019745	3.8063	0.0020717	4.1691	0.0022692	544.2820890938616	13.148	0.083567	13.148	13.105	13.189	0					4	2	2	0	0	0	0.41958	1	2936	2936		32.812	3.6629	1	268450			30691	22950	21060	21132	31083	31083					0.005996708121301708
QFIMTAFTEE	10	Unmodified	_QFIMTAFTEE_					0	0	0			REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	608.782470703125	2	608.781364	1215.54818	2.9239	0.00178	-1.3851	-0.00084324	1.5388	0.00093678	608.7806561275386	40.141	0.14221	40.141	40.034	40.176	0					5	3	2	0	0	0	0.41335	1	15920	15920		54.776	15.523	1	79222	+		30692	20342	21061	21133	31084	31084					-0.05097661565059752
QFIVIWAY	8	Unmodified	_QFIVIWAY_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2861328125	2	520.284203	1038.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.112	1	13.112	12.612	13.612	0								0	0	0	1.7419	1	2615	2615		23.037	1.0768	1		+		30693	13545	21062	21134	31085	31085					0.036118497995630605
QFKENLSQ	8	Unmodified	_QFKENLSQ_					0	0	0			REV__ENSG00000166130|ENST00000299157|IKBIP	REV__ENSG00000166130|ENST00000299157|IKBIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2557373046875	2	497.253631	992.49271	3.3979	0.0016896	0.15921	7.9165E-05	3.5571	0.0017688	497.2537918297024	16.169	0.10257	16.169	16.104	16.206	0					5	3	2	0	0	0	0.22109	1	3821	3821		129.42	13.927	1	180050	+		30694	16093	21063	21135	31086	31086					-0.003837069705241447
QFKLTVGEF	9	Unmodified	_QFKLTVGEF_					0	0	0			REV__nc|ENSG00000220201|P0C6A0-1|ZGLP1	REV__nc|ENSG00000220201|P0C6A0-1|ZGLP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7901000976562	2	534.78985	1067.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.514	1	30.514	30.014	31.014	0								0	0	0	0.082437	1	11414	11414		76.774	10.345	1		+		30695	17608	21064	21136	31087	31087					0.034066271030496864
QFLASRRR	8	Unmodified	_QFLASRRR_					0	0	0			REV__ENST00000375856.4_1_13:110408345-110408618:-|nuORF	REV__ENST00000375856.4_1_13:110408345-110408618:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.3057861328125	2	517.304324	1032.5941	3.3211	0.001718	-0.63043	-0.00032612	2.6907	0.0013919	517.3039996660966	25.874	0.40051	25.874	25.684	26.085	0					15	6	3	0	0	0	0.29286	1	9082	9082		84.916	84.916	1	1651400	+		30696	18709	21065	21137	31088	31088					0.07910209242709243
QFLDHNYEYY	10	Unmodified	_QFLDHNYEYY_					0	0	0			REV__SAV1|p.A185Vfs*10|1|0.1|ENSG00000151748|chr14:50644996-50644997|-/ATCA|frameshift_variant	REV__SAV1|p.A185Vfs*10|1|0.1|ENSG00000151748|chr14:50644996-50644997|-/ATCA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	696.299072265625	2	696.298767	1390.58298	2.2036	0.0015344	-2.2329	-0.0015548	-0.029315	-2.0412E-05	696.2975066928002	15.722	0.16717	15.722	15.664	15.832	0					7	3	3	0	0	0	0.63224	1	4222	4222		30.318	0	1	667320	+		30697	15489	21066	21138	31089	31089					-0.09668702432736609
QFLINPKVTQ	10	Unmodified	_QFLINPKVTQ_					0	0	0			REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.3427734375	2	594.342781	1186.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.282	1	17.282	16.782	17.782	0								0	0	0	0.21987	1	4092	4092		49.536	0	1		+		30698	12141	21067	21139	31090	31090					0.08513962948518383
QFLKGLSEF	9	Unmodified	_QFLKGLSEF_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7898559570312	2	534.78985	1067.56515	-1.346	-0.00071985	1.8132	0.00096966	0.46712	0.00024981	534.7909575365167	30.327	0.22065	30.327	30.21	30.431	0					13	5	3	0	0	0	0.33044	1	10283	10283		47.657	3.1263	1	254040			30699	7948	21068	21140	31091	31091					0.034066271030496864
QFLLGPEL	8	Unmodified	_QFLLGPEL_					0	0	0		ENST00000263102.6_1_10:61552344-61552569:-|nuORF	ENST00000263102.6_1_10:61552344-61552569:-|nuORF	ENST00000263102.6_1_10:61552344-61552569:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.75909423828125	2	458.760561	915.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.404	1	16.404	15.904	16.904	0								0	0	0	1.7419	1	3882	3882		57.811	2.3071	1				30700	8314	21069	21141	31092	31092					0.04543570528562668
QFLPLKNGK	9	Unmodified	_QFLPLKNGK_					0	0	0		nc|ENSG00000163357|Q5T197-2|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.812744140625	2	522.813659	1043.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.089	1	18.089	17.589	18.589	0								0	0	0	0.19749	1	4651	4651		51.335	1.8939	1				30701	11615	21070	21142	31093	31093					0.09270326093883341
QFNSDVRFK	9	Unmodified	_QFNSDVRFK_					0	0	0			REV__ENST00000407775.6_1_8:106573614-106573692:+|nuORF	REV__ENST00000407775.6_1_8:106573614-106573692:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.7932739257812	2	570.793455	1139.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.246	1	29.246	28.746	29.746	0								0	0	0	0.27939	1	9504	9504		39.253	7.6186	1		+		30702	18983	21071	21143	31094	31094					0.008153597034606719
QFQEILRL	8	Unmodified	_QFQEILRL_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.8038330078125	2	523.803291	1045.59203	0.74286	0.00038911	-0.11636	-6.0949E-05	0.6265	0.00032816	523.8028376411742	22.415	0.31586	22.415	22.154	22.47	0					16	9	2	0	0	0	0.70598	1	6266	6266		30.504	4.9296	1	61634			30703	3919	21072	21144	31095	31095					0.07105735714230832
QFQHLVAFK	9	Unmodified	_QFQHLVAFK_					0	0	0		ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3114013671875	2	559.311284	1116.60801	0.51496	0.00028802	0.10061	5.6273E-05	0.61557	0.0003443	559.3112914817307	22.332	1.4945	22.332	22.197	23.691	0					88	35	3	0	0	0	0.1115	1	7223	7223		76.774	7.1465	1	14981000			30704	8777	21073	21145	31096	31096					0.05437441951130495
QFQHLVAFK	9	Unmodified	_QFQHLVAFK_					0	0	0		ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3115234375	2	559.311284	1116.60801	-0.45717	-0.0002557	0.85557	0.00047853	0.3984	0.00022283	559.3118000579537	22.067	0.66261	22.067	21.968	22.63	0					47	20	3	0	0	0	0.071197	1	6428	6428		87.754	0	1	893130			30705	8777	21073	21145	31097	31097					0.05437441951130495
QFQHLVAFK	9	Unmodified	_QFQHLVAFK_					0	0	0		ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3114624023438	2	559.311284	1116.60801	1.7754	0.00099301	-2.6625	-0.0014892	-0.88708	-0.00049616	559.3103884890998	22.234	1.1572	22.234	22.005	23.162	0					53	23	4	0	0	0	0.036372	1	7500	7500		102.77	36.97	1	1717600			30706	8777	21073	21145	31098	31098					0.05437441951130495
QFQHLVAFK	9	Unmodified	_QFQHLVAFK_					0	0	0		ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	ENST00000352732.9_1_15:89738886-89738976:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3121337890625	2	559.311284	1116.60801	-0.1015	-5.6769E-05	0.58277	0.00032595	0.48128	0.00026918	559.3115557058519	22.245	1.5092	22.245	22.136	23.646	0					74	30	3	0	0	0	0.071197	1	7487	7487		87.754	21.325	1	7320200			30707	8777	21073	21145	31099	31099					0.05437441951130495
QFQINQFIQ	9	Unmodified	_QFQINQFIQ_					0	0	0			REV__TMC3|p.H607Tfs*40|1|0.34|ENSG00000188869|chr15:81341415-81341415|G/-|frameshift_variant	REV__TMC3|p.H607Tfs*40|1|0.34|ENSG00000188869|chr15:81341415-81341415|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.2035217285156	3	389.204862	1164.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.289	1	12.289	11.789	12.789	0								0	0	0	0.13137	1	2581	2581		64.207	9.4849	1		+		30708	17198	21074	21146	31100	31100					0.01704530363304002
QFQQKLAL	8	Unmodified	_QFQQKLAL_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2840881347656	2	488.284734	974.554916	-1.2481	-0.00060943	-0.15217	-7.4304E-05	-1.4003	-0.00068373	488.28495414317155	30.78	0.072887	30.78	30.742	30.815	0					4	2	2	0	0	0	0.65276	1	10145	10145		40.573	0	1	74841	+		30709	17610	21075	21147	31101	31101					0.06662064168460802
QFQRIKSY	8	Unmodified	_QFQRIKSY_					0	0	0			REV__ENSG00000100403|ENST00000352645|ZC3H7B	REV__ENSG00000100403|ENST00000352645|ZC3H7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7932739257812	2	535.293091	1068.57163	2.2077	0.0011817	-1.8664	-0.00099908	0.34124	0.00018267	535.292285078753	24.756	0.54155	24.756	24.533	25.074	0					42	13	4	0	0	0	0.51384	1	8439	8439		47.916	9.1095	1	4653600	+		30710	13550	21076	21148	31102	31102					0.04008565054414248
QFQYRTLDE	9	Unmodified	_QFQYRTLDE_					0	0	0			REV__ENSG00000183549|ENST00000331849|ACSM5	REV__ENSG00000183549|ENST00000331849|ACSM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2904052734375	2	600.288202	1198.56185	3.1217	0.0018739	0.67453	0.00040491	3.7963	0.0022789	600.2884781235227	45.355	1.0959	45.355	44.654	45.75	0					74	45	2	0	0	0	0.48389	1	18149	18149		34.173	3.8548	1	87189	+		30711	16939	21077	21149	31103	31103					-0.029486677416116436
QFRCQEGAD	9	Unmodified	_QFRCQEGAD_					0	0	0			REV__ADAMTS10|p.D476G|1|0.07|ENSG00000142303|chr19:8595814-8595814|T/C|missense_variant	REV__ADAMTS10|p.D476G|1|0.07|ENSG00000142303|chr19:8595814-8595814|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2238159179688	2	527.224548	1052.43454	0.10398	5.4822E-05	-1.5043	-0.00079312	-1.4003	-0.0007383	527.2238458518293	12.416	0.76081	12.416	12.107	12.868	0					52	24	3	0	0	0	0.59802	1	2648	2648		21.96	0	1	731590	+		30712	12069	21078	21150	31104	31104					-0.08957711887433106
QFRFLQTSPKI	11	Unmodified	_QFRFLQTSPKI_					0	0	0		ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.5929260253906	3	455.59435	1363.76122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.708	1	19.708	19.208	20.208	0								0	0	0	0.45674	1	5995	5995		12.957	2.3707	1				30713	7632	21079	21151	31105	31105					0.09389012276938047
QFRLAAVGPT	10	Unmodified	_QFRLAAVGPT_					0	0	0		ENST00000378402.9_1_8:110535537-110539057:+|nuORF	ENST00000378402.9_1_8:110535537-110539057:+|nuORF	ENST00000378402.9_1_8:110535537-110539057:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2998657226562	2	530.300916	1058.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.012	1	35.012	34.512	35.512	0								0	0	0	0.39244	1	12439	12439		32.812	2.3088	1				30714	9068	21080	21152	31106	31106					0.0603285157146729
QFRPRRGGL	9	Unmodified	_QFRPRRGGL_					0	0	0			REV__ENST00000438872.1_1_3:48482089-48487686:-|nuORF	REV__ENST00000438872.1_1_3:48482089-48487686:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8195190429688	2	543.817599	1085.62064	3.6574	0.001989	-0.48271	-0.0002625	3.1747	0.0017265	543.817301118498	32.655	0.96152	32.655	32.085	33.046	0					61	19	4	0	0	0	0.50858	1	12226	12226		17.365	17.365	1	2379700	+		30715	19223	21081	21153	31107	31107					0.08125898134039744
QFRRRSARL	9	Unmodified	_QFRRRSARL_					0	0	0			REV__ENST00000454020.1_3_2:234756047-234763110:-|nuORF	REV__ENST00000454020.1_3_2:234756047-234763110:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	595.354248046875	2	595.35488	1188.69521	-0.55219	-0.00032875	0.3798	0.00022611	-0.1724	-0.00010264	595.3552759327877	14.989	0.077415	14.989	14.945	15.022	0					5	3	2	0	0	0	0.54081	1	3341	3341		14.865	0	1	62253	+		30716	14363	21082	21154	31108	31108					0.10840660945405034
QFSGKITVK	9	Unmodified	_QFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.298095703125	2	504.297842	1006.58113	-0.024201	-1.2204E-05	0.6933	0.00034963	0.6691	0.00033743	504.2980792124777	23.945	0.12347	23.945	23.86	23.983	0					5	3	2	0	0	0	0.16002	1	7396	7396		66.429	2.222	1	58589			30717	1543	21083	21155	31109	31109					0.0781033333993264
QFSGKITVK	9	Unmodified	_QFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2977294921875	2	504.297842	1006.58113	-0.38038	-0.00019182	-0.11322	-5.7098E-05	-0.4936	-0.00024892	504.29780824365264	24.088	0.3149	24.088	23.981	24.295	0					11	6	3	0	0	0	0.0097668	1	8269	8269		141.52	9.9042	1	937890			30718	1543	21083	21155	31110	31110					0.0781033333993264
QFSKLTKFI	9	Unmodified	_QFSKLTKFI_					0	0	0			REV__ENST00000532672.5_1_11:102219446-102220646:+|nuORF	REV__ENST00000532672.5_1_11:102219446-102220646:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.329833984375	2	556.329142	1110.64373	0.55274	0.00030751	-0.74117	-0.00041233	-0.18843	-0.00010483	556.3285038318087	32.468	0.25491	32.468	32.372	32.627	0					8	6	2	0	0	0	0.4966	1	12335	12335		32.812	7.2384	1	81936	+		30719	20074	21084	21156	31111	31111					0.09283479408145467
QFSLTQTL	8	Unmodified	_QFSLTQTL_					0	0	0			REV__ENSG00000152292|ENST00000469800|SH2D6	REV__ENSG00000152292|ENST00000469800|SH2D6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2537841796875	2	469.2531	936.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.974	1	30.974	30.474	31.474	0								0	0	0	1.7419	1	9916	9916		24.519	0	1		+		30720	15503	21085	21157	31112	31112					0.0208607866057946
QFSRIAQSK	9	Unmodified	_QFSRIAQSK_					0	0	0			REV__ENST00000511730.2_1_5:40716249-40756023:-|nuORF	REV__ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7962036132812	2	532.795998	1063.57744	2.355	0.0012548	-1.2041	-0.00064156	1.1509	0.00061319	532.7950862164738	14.657	0.17406	14.657	14.616	14.79	0					5	4	2	0	0	0	0.13267	1	3634	3634		71.877	15.156	1	448600	+		30721	19882	21086	21158	31113	31113					0.048196635660815446
QFSRIAQSK	9	Unmodified	_QFSRIAQSK_					0	0	0			REV__ENST00000511730.2_1_5:40716249-40756023:-|nuORF	REV__ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7964477539062	2	532.795998	1063.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.648	1	14.648	14.148	15.148	0								0	0	0	0.19616	1	3692	3692		51.528	5.5758	1		+		30722	19882	21086	21158	31114	31114					0.048196635660815446
QFSVKHMK	8	Unmodified	_QFSVKHMK_					0	0	0			REV__KIF5C|p.E679K|1|0.08|ENSG00000168280|chr2:148997275-148997275|G/A|missense_variant	REV__KIF5C|p.E679K|1|0.08|ENSG00000168280|chr2:148997275-148997275|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.77276611328125	2	502.770937	1003.52732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.268	1	13.268	12.768	13.768	0								0	0	0	1.7419	1	2725	2725		90.37	2.6734	1		+		30723	20789	21087	21159	31115	31115					0.02569837636599459
QFSVKHMK	8	Unmodified	_QFSVKHMK_					0	0	0			REV__KIF5C|p.E679K|1|0.08|ENSG00000168280|chr2:148997275-148997275|G/A|missense_variant	REV__KIF5C|p.E679K|1|0.08|ENSG00000168280|chr2:148997275-148997275|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.77203369140625	2	502.770937	1003.52732	2.927	0.0014716	-0.82756	-0.00041607	2.0994	0.0010555	502.77051755592584	13.462	0.23396	13.462	13.323	13.557	0					14	5	3	0	0	0	0.28444	1	3119	3119		87.696	87.696	1	848220	+		30724	20789	21087	21159	31116	31116					0.02569837636599459
QFTLGEILR	9	Unmodified	_QFTLGEILR_					0	0	0			REV__LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant	REV__LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.8068237304688	2	538.808574	1075.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.261	1	12.261	11.761	12.761	0								0	0	0	0.30009	1	2717	2717		20.947	3.582	1		+		30725	15243	21088	21160	31117	31117					0.06781718368665679
QFTPAEDNV	9	Unmodified	_QFTPAEDNV_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.7361755371094	2	510.735271	1019.45599	1.0802	0.00055171	1.4917	0.00076187	2.5719	0.0013136	510.73538331855116	26.744	0.11357	26.744	26.687	26.8	0					6	4	2	0	0	0	0.44593	1	8176	8176		37.812	3.639	1	28624	+		30726	16110	21089	21161	31118	31118					-0.05296003587091036
QFVNEGDAV	9	Unmodified	_QFVNEGDAV_					0	0	0			REV__GON4L|p.A1241V|1|0.39|ENSG00000116580|chr1:155765751-155765751|G/A|missense_variant	REV__GON4L|p.A1241V|1|0.39|ENSG00000116580|chr1:155765751-155765751|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.73028564453125	2	489.729989	977.445425	0.60426	0.00029592	-0.13349	-6.5373E-05	0.47077	0.00023055	489.7301269812099	11.773	0.137	11.773	11.693	11.83	0					7	4	2	0	0	0	0.53083	1	2498	2498		29.15	1.2673	1	53861	+		30727	20697	21090	21162	31119	31119					-0.04419986241521201
QFVNNIWK	8	Unmodified	_QFVNNIWK_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7826538085938	2	524.782359	1047.55016	0.41761	0.00021916	-0.42562	-0.00022336	-0.0080077	-4.2023E-06	524.7821367164194	16.126	0.066175	16.126	16.064	16.13	0					4	2	2	0	0	0	0.57802	1	3798	3798		52.299	23.15	1	113300	+		30728	14944	21091	21163	31120	31120					0.02829180025696587
QFVSRVSNF	9	Unmodified	_QFVSRVSNF_					0	0	0			REV__ENST00000495254.5_1_1:79119932-79128426:+|nuORF	REV__ENST00000495254.5_1_1:79119932-79128426:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2836303710938	2	542.282723	1082.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.192	1	43.192	42.692	43.692	0								0	0	0	0.23445	1	17280	17280		45.972	3.4978	1		+		30729	14949	21092	21164	31121	31121					0.012919746747684258
QGAGASKSKSQ	11	Unmodified	_QGAGASKSKSQ_					0	0	0			REV__nc|ENSG00000168137|Q9C0A6-2|SETD5	REV__nc|ENSG00000168137|Q9C0A6-2|SETD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7750244140625	2	524.772719	1047.53089	3.4368	0.0018035	0.64079	0.00033627	4.0776	0.0021398	524.7730043066234	18.345	0.51365	18.345	18.239	18.752	0					23	10	3	0	0	0	0.093595	1	5463	5463		91.265	2.2364	1	13260000	+		30730	16243	21093	21165	31122	31122					0.009021789441476358
QGAMRLLQ	8	Unmodified	_QGAMRLLQ_					0	0	0			REV__nc|ENSG00000100300|B1AH88|TSPO	REV__nc|ENSG00000100300|B1AH88|TSPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.75921630859375	2	458.755287	915.496021	4.2984	0.0019719	2.8245	0.0012957	7.1228	0.0032676	458.756466696576	16.401	0.11252	16.401	16.304	16.417	0					6	4	2	0	0	0	0.52345	1	3924	3924		57.811	57.811	1	64343	+		30731	20955	21094	21166	31123	31123					0.03489264602490039
QGATMTRLT	9	Oxidation (M)	_QGATM(Oxidation (M))TRLT_		QGATM(1)TRLT		QGATM(80)TRLT	0	0	1			REV__ENST00000332995.11_1_6:13283711-13286435:+|nuORF	REV__ENST00000332995.11_1_6:13283711-13286435:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7516784667969	2	497.752941	993.491329	-2.2621	-0.001126	-1.3978	-0.00069576	-3.6599	-0.0018217	497.7522710376154	17.065	0.26997	17.065	16.957	17.227	0					20	8	4	0	0	0	0.098791	1	4150	4150		79.713	79.713	1	991270	+		30732	18393	21095	21167	31124	31124		687			-0.005676643309470819
QGAVTLETTVS	11	Unmodified	_QGAVTLETTVS_					0	0	0		ENSG00000065029|ENST00000373953|ZNF76;nc|ENSG00000065029|P36508-2|ZNF76	ENSG00000065029|ENST00000373953|ZNF76	ENSG00000065029|ENST00000373953|ZNF76	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.2931518554688	2	553.290411	1104.56627	1.821	0.0010075	4.1814	0.0023135	6.0024	0.0033211	553.2927896081906	15.745	0.21186	15.745	15.697	15.909	0					8	5	2	0	0	0	0.33926	1	4141	4141		58.23	1.5089	1	152780			30733	1362	21096	21168	31125	31125					0.018167966812825398
QGAYFYLAG	9	Unmodified	_QGAYFYLAG_					0	0	0		nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-4|NDOR1	nc|ENSG00000188566|Q9UHB4-4|NDOR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2406921386719	2	495.239993	988.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.918	1	14.918	14.418	15.418	0								0	0	0	0.24438	1	3741	3741		44.531	8.9128	1				30734	7256	21097	21169	31126	31126					-0.029261905109024156
QGCQMLMHT	9	Unmodified	_QGCQMLMHT_					0	0	0			REV__PXDN|p.W821C|1|0.37|ENSG00000130508|chr2:1649317-1649317|C/A|missense_variant	REV__PXDN|p.W821C|1|0.37|ENSG00000130508|chr2:1649317-1649317|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.72216796875	2	524.722272	1047.42999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.438	1	13.438	12.938	13.938	0								0	0	0	0.32356	1	3118	3118		30.504	4.9296	1		+		30735	21432	21098	21170	31127	31127					-0.09182635626234514
QGDALRQMQ	9	Unmodified	_QGDALRQMQ_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7535400390625	2	523.756015	1045.49748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.883	1	29.883	29.383	30.383	0								0	0	0	0.19749	1	10108	10108		51.335	6.8044	1				30736	3480	21099	21171	31128	31128					-0.02345146099401063
QGDFLPGCEG	10	Unmodified	_QGDFLPGCEG_					0	0	0		nc|ENSG00000102796|A0PJE2-2|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7177429199219	2	511.716024	1021.4175	0.00085607	4.3807E-07	2.8989	0.0014834	2.8997	0.0014838	511.71714403103397	17.14	0.34429	17.14	17.045	17.39	0					15	8	3	0	0	0	0.54197	1	4775	4775		40.778	0.20554	1	393920			30737	11464	21100	21172	31129	31129					-0.09235632493255252
QGDFLPGCEG	10	Unmodified	_QGDFLPGCEG_					0	0	0		nc|ENSG00000102796|A0PJE2-2|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7176513671875	2	511.716024	1021.4175	-0.44289	-0.00022664	4.0906	0.0020932	3.6477	0.0018666	511.7171749397569	17.089	0.40837	17.089	16.98	17.388	0					11	8	2	0	0	0	0.50881	1	5025	5025		44.377	3.599	1	357490			30738	11464	21100	21172	31130	31130					-0.09235632493255252
QGDKKTWRW	9	Unmodified	_QGDKKTWRW_					0	0	0		ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.8147583007812	2	602.814722	1203.61489	0.14571	8.7834E-05	-0.065304	-3.9366E-05	0.080402	4.8468E-05	602.8146983423651	17.492	0.47004	17.492	17.41	17.88	0					36	14	4	0	0	0	0.15163	1	4161	4161		51.335	51.335	1	1608700			30739	4504	21101	21173	31131	31131					0.021227548317028777
QGDLRVLGDG	10	Unmodified	_QGDLRVLGDG_					0	0	0			REV__ENSG00000102802|ENST00000380482|MEDAG	REV__ENSG00000102802|ENST00000380482|MEDAG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2702026367188	2	515.269813	1028.52507	1.4078	0.00072538	-1.0105	-0.00052068	0.39726	0.0002047	515.2693669785709	13.424	0.18129	13.424	13.376	13.557	0					10	4	3	0	0	0	0.50881	1	3276	3276		44.377	6.5657	1	272880	+		30740	13646	21102	21174	31132	31132					0.011950804324669662
QGDNLDRCSS	10	Unmodified	_QGDNLDRCSS_					0	0	0		nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.7301635742188	2	547.730194	1093.44584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.369	1	20.369	19.869	20.869	0								0	0	0	0.37129	1	5714	5714		39.253	0.44669	1				30741	7708	21103	21175	31133	31133					-0.09714934583985269
QGDNNDWFV	9	Unmodified	_QGDNNDWFV_					0	0	0			REV__ENSG00000119938|ENST00000238994|PPP1R3C	REV__ENSG00000119938|ENST00000238994|PPP1R3C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.7295532226562	2	547.73052	1093.44649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.02	1	20.02	19.52	20.52	0								0	0	0	0.17378	1	5551	5551		54.776	1.4249	1		+		30742	14263	21104	21176	31134	31134					-0.0964977187261411
QGDRCIMGQ	9	Unmodified	_QGDRCIMGQ_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2249450683594	2	504.223494	1006.43243	2.9312	0.001478	0.23895	0.00012048	3.1701	0.0015985	504.2235785314447	24.355	0.21815	24.355	24.196	24.414	0					10	4	3	0	0	0	0.28897	1	8405	8405		51.193	8.7182	1	710730			30743	7050	21105	21177	31135	31135					-0.07052463896900463
QGDRSPRSF	9	Unmodified	_QGDRSPRSF_					0	0	0			REV__ENST00000329285.12_1_19:35264009-35264063:-|nuORF	REV__ENST00000329285.12_1_19:35264009-35264063:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2586059570312	2	525.259779	1048.50501	0.096124	5.049E-05	-2.6466	-0.0013902	-2.5505	-0.0013397	525.2582460812665	39.781	0.22308	39.781	39.627	39.85	0					15	9	2	0	0	0	0.24334	1	15141	15141		40.778	0	1	63250	+		30744	18372	21106	21178	31136	31136					-0.01730670507481591
QGEITKER	8	Unmodified	_QGEITKER_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7591247558594	2	480.759081	959.503609	0.51388	0.00024705	-1.395	-0.00067064	-0.88109	-0.00042359	480.7589064670288	17.622	0.20839	17.622	17.46	17.668	0					7	5	2	0	0	0	0.50061	1	5018	5018		60.118	3.6845	1	327910			30745	5817	21107	21179	31137	31137					0.022236954037566647
QGEITSSNQL	10	Unmodified	_QGEITSSNQL_					0	0	0		ENST00000196371.9_1_5:41731180-41731306:-|nuORF	ENST00000196371.9_1_5:41731180-41731306:-|nuORF	ENST00000196371.9_1_5:41731180-41731306:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7653198242188	2	538.76456	1075.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.895	1	35.895	35.395	36.395	0								0	0	0	0.36846	1	12816	12816		40.058	4.4399	1				30746	8149	21108	21180	31138	31138					-0.020169470126347733
QGEPPKLP	8	Unmodified	_QGEPPKLP_					0	0	0			REV__ENSG00000102870|ENST00000262525|ZNF629	REV__ENSG00000102870|ENST00000262525|ZNF629	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.24267578125	2	433.242535	864.470518	0.21094	9.1387E-05	-0.65813	-0.00028513	-0.4472	-0.00019374	433.2422053078702	30.039	0.42746	30.039	29.706	30.133	0					20	11	2	0	0	0	0.68432	1	10089	10089		35.618	1.4457	1	86396	+		30747	13650	21109	21181	31139	31139					0.03286113351691711
QGESHDRHF	9	Unmodified	_QGESHDRHF_					0	0	0		ENST00000265594.8_1_3:182755007-182755076:-|nuORF	ENST00000265594.8_1_3:182755007-182755076:-|nuORF	ENST00000265594.8_1_3:182755007-182755076:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.7470092773438	2	556.747036	1111.47952	-0.15072	-8.391E-05	-0.41575	-0.00023147	-0.56647	-0.00031538	556.7471294253639	17.138	0.55333	17.138	16.93	17.483	0					39	11	5	0	0	0	0.30257	1	5001	5001		60.118	18.692	1	1093800			30748	8349	21110	21182	31140	31140					-0.0717614502991637
QGETRLTGST	10	Unmodified	_QGETRLTGST_					0	0	0			REV__nc|ENSG00000178217|Q5SQS7-3|SH2D4B	REV__nc|ENSG00000178217|Q5SQS7-3|SH2D4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2677612304688	2	525.264727	1048.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.247	1	45.247	44.747	45.747	0								0	0	0	0.30854	1	18122	18122		49.536	6.6718	1		+		30749	21139	21111	21183	31141	31141					-0.007415272927573824
QGFSNHVPQ	9	Unmodified	_QGFSNHVPQ_					0	0	0		ENST00000327535.5_1_1:24482054-24482345:-|nuORF	ENST00000327535.5_1_1:24482054-24482345:-|nuORF	ENST00000327535.5_1_1:24482054-24482345:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2430114746094	2	507.243598	1012.47264	-0.18003	-9.1321E-05	-1.148	-0.00058232	-1.328	-0.00067364	507.243019379214	22.498	0.16853	22.498	22.387	22.555	0					8	3	3	0	0	0	0.36135	1	7505	7505		37.812	2.6108	1	225740			30750	8657	21112	21184	31142	31142					-0.033094579104840705
QGGDLGSLSPF	11	Unmodified	_QGGDLGSLSPF_					0	0	0		ENST00000574857.1_1_17:2276102-2276510:+|nuORF	ENST00000574857.1_1_17:2276102-2276510:+|nuORF	ENST00000574857.1_1_17:2276102-2276510:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.263427734375	2	539.264196	1076.51384	0.24982	0.00013472	-1.4736	-0.00079468	-1.2238	-0.00065996	539.2632674512705	40.198	0.23706	40.198	40.097	40.334	0					14	10	2	0	0	0	0.68382	1	15317	15317		29.17	1.2878	1	44036			30751	10819	21113	21185	31143	31143					-0.021357416616638147
QGGGLESPTKP	11	Unmodified	_QGGGLESPTKP_					0	0	0		nc|ENSG00000131668|Q9HBU1-2|BARX1;ENSG00000131668|ENST00000253968|BARX1	nc|ENSG00000131668|Q9HBU1-2|BARX1	nc|ENSG00000131668|Q9HBU1-2|BARX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7772827148438	2	535.77747	1069.54039	1.9061	0.0010213	-1.015	-0.00054382	0.89112	0.00047744	535.7773391083522	50.182	0.13264	50.182	50.103	50.235	0					14	6	3	0	0	0	0.70609	1	19819	19819		27.047	0.25122	1	95767			30752	3732	21114	21186	31144	31144					0.00839947229678728
QGGKDWSPTL	10	Unmodified	_QGGKDWSPTL_					0	0	0		ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2	ENSG00000115159|ENST00000438166|GPD2	ENSG00000115159|ENST00000438166|GPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.5171203613281	3	363.517218	1087.52982	1.3307	0.00048372	-1.2979	-0.0004718	0.032787	1.1919E-05	363.51670392539484	24.828	0.41134	24.828	24.645	25.056	0					19	8	4	0	0	0	0.64178	1	8761	8761		27.047	1.5971	1	984940			30753	2885	21115	21187	31145	31145					-0.0104403542475211
QGGLSRGLCPA	11	Unmodified	_QGGLSRGLCPA_					0	0	0		ENST00000374676.4_1_1:22162006-22165376:-|nuORF	ENST00000374676.4_1_1:22162006-22165376:-|nuORF	ENST00000374676.4_1_1:22162006-22165376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.775390625	2	529.774208	1057.53386	0.11376	6.0267E-05	1.8176	0.00096289	1.9313	0.0010232	529.7751784168847	14.102	0.18042	14.102	14.003	14.184	0					8	4	3	0	0	0	0.53842	1	3372	3372		41.427	3.6151	1	372760			30754	9015	21116	21188	31146	31146					0.007397307972951239
QGGLVANRGR	10	Unmodified	_QGGLVANRGR_					0	0	0		nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.19793701171875	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.144	1	53.144	52.644	53.644	0								0	0	0	0.4044	1	20520	20520		29.17	3.596	1				30755	3541	21117	21189	31147	31147					0.056053150004117924
QGGPLMVIVE	10	Oxidation (M)	_QGGPLM(Oxidation (M))VIVE_		QGGPLM(1)VIVE		QGGPLM(69)VIVE	0	0	1		nc|ENSG00000102755|P17948-6|FLT1;nc|ENSG00000102755|P17948-5|FLT1;FLT1|p.L977Efs*2|1|0.31|ENSG00000102755|chr13:28322817-28322818|TT/-|frameshift_variant;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-6|FLT1	nc|ENSG00000102755|P17948-6|FLT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2823486328125	2	529.781167	1057.54778	1.7343	0.00091878	2.2049	0.0011681	3.9391	0.0020869	529.7825480902341	16.883	0.30054	16.883	16.712	17.013	0					17	6	5	0	0	0	0.28723	1	4892	4892		68.787	12.066	1	1743400			30756	2186	21118	21190	31148	31148		98			0.021309635057150444
QGGRYECL	8	Unmodified	_QGGRYECL_					0	0	0			REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF	REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2130126953125	2	463.213452	924.412351	-0.70816	-0.00032803	-0.33759	-0.00015638	-1.0457	-0.0004844	463.2134464739686	27.58	0.34442	27.58	27.448	27.792	0					17	8	3	0	0	0	0.37378	1	9660	9660		73.975	13.681	1	325930	+		30757	19230	21119	21191	31149	31149					-0.05287891565217251
QGGSGGNA	8	Unmodified	_QGGSGGNA_					0	0	0			REV__ENSG00000188779|ENST00000380035|SKOR1	REV__ENSG00000188779|ENST00000380035|SKOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.14263916015625	2	324.14081	646.267067	1.5189	0.00049235	0.50516	0.00016374	2.0241	0.00065609	324.14232437371845	44.234	0.28133	44.234	44.129	44.41	0					35	15	3	0	0	0	0.78751	1	17244	17244		12.207	0	1	161520	+		30758	17193	21120	21192	31150	31150					-0.07021611369907532
QGIDRIKK	8	Unmodified	_QGIDRIKK_					0	0	0			REV__tr|U7SPX2|U7SPX2_FUSNUAminotransferaseclassVdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01650PE=3SV=1	REV__tr|U7SPX2|U7SPX2_FUSNUAminotransferaseclassVdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01650PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2953186035156	2	479.295633	956.576714	-2.9269	-0.0014028	2.1427	0.001027	-0.78411	-0.00037582	479.29658170111935	22.554	0.15138	22.554	22.454	22.605	0					5	3	2	0	0	0	0.27512	1	6746	6746		90.777	3.0224	1	247910	+		30759	21832	21121	21193	31151	31151					0.09668868917037798
QGIEKARAQT	10	Unmodified	_QGIEKARAQT_					0	0	0			REV__SMPD3|p.R157I|1|0.28|ENSG00000103056|chr16:68371712-68371712|C/A|missense_variant	REV__SMPD3|p.R157I|1|0.28|ENSG00000103056|chr16:68371712-68371712|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.3067016601562	2	551.304187	1100.59382	1.8285	0.0010081	2.7347	0.0015076	4.5632	0.0025157	551.305831345244	15.778	0.17311	15.778	15.697	15.87	0					6	4	2	0	0	0	0.41335	1	4162	4162		54.776	1.4249	1	167520	+		30760	13662	21122	21194	31152	31152					0.04754744732167637
QGIERLHP	8	Unmodified	_QGIERLHP_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.26397705078125	2	475.264333	948.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.501	1	38.501	38.001	39.001	0								0	0	0	1.7419	1	14633	14633		38.806	6.8513	1				30761	5141	21123	21195	31153	31153					0.03779722848844358
QGIFSVTC	8	Unmodified	_QGIFSVTC_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.7076416015625	2	427.707471	853.400389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.579	1	31.579	31.079	32.079	0								0	0	0	1.7419	1	10478	10478		21.96	0	1				30762	838	21124	21196	31154	31154					-0.032175083083984646
QGIILRNHM	9	Unmodified	_QGIILRNHM_					0	0	0		ZNF564|p.R61I|1|0.23|ENSG00000249709|chr19:12528313-12528313|C/A|missense_variant	ZNF564|p.R61I|1|0.23|ENSG00000249709|chr19:12528313-12528313|C/A|missense_variant	ZNF564|p.R61I|1|0.23|ENSG00000249709|chr19:12528313-12528313|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.3011474609375	2	541.300393	1080.58623	0.2904	0.00015719	1.1643	0.00063022	1.4547	0.00078741	541.3011150780045	21.956	0.26494	21.956	21.854	22.119	0					17	6	4	0	0	0	0.44593	1	7048	7048		23.042	7.4007	1	1755100			30763	23163	21125	21197	31155	31155					0.04916313930903016
QGINHKLLQ	9	Unmodified	_QGINHKLLQ_					0	0	0			REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.805908203125	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.936	1	23.936	23.436	24.436	0								0	0	0	0.21054	1	6993	6993		49.442	0	1		+		30764	12653	21126	21198	31156	31156					0.07536253945750104
QGINHKLLQ	9	Unmodified	_QGINHKLLQ_					0	0	0			REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8065795898438	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.012	1	24.012	23.512	24.512	0								0	0	0	0.11184	1	7421	7421		68.787	0	1		+		30765	12653	21126	21198	31157	31157					0.07536253945750104
QGINLVLLTR	10	Unmodified	_QGINLVLLTR_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;ENSG00000107521|ENST00000361490|HPS1;nc|ENSG00000289758|Q92902-4|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.8512573242188	2	563.850773	1125.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.611	1	23.611	23.111	24.111	0								0	0	0	0.32041	1	8158	8158		47.657	0	1				30766	2483	21127	21199	31158	31158					0.12917669185412706
QGIQQPLATIE	11	Unmodified	_QGIQQPLATIE_					0	0	0			REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF	REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	599.3292846679688	2	599.327328	1196.6401	3.1419	0.001883	0.61526	0.00036874	3.7571	0.0022517	599.3275199219304	41.453	1.409	41.453	40.469	41.878	0					87	32	4	0	0	0	0.68382	1	16313	16313		29.17	2.4771	1	438280	+		30767	14850	21128	21200	31159	31159					0.04964764843612102
QGISSLKVWT	10	Unmodified	_QGISSLKVWT_					0	0	0		nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.54412841796875	3	373.544996	1117.61316	0.34407	0.00012853	-2.7439	-0.001025	-2.3998	-0.00089644	373.87885821640754	38.518	0.28551	38.518	38.325	38.61	0					14	9	2	0	0	0	0.71857	1	14661	14661		19.263	0.73163	1	101500			30768	5271	21129	21201	31160	31160					0.05905701023084475
QGITWYGMF	9	Unmodified	_QGITWYGMF_					0	0	0			REV__VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant	REV__VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7566528320312	2	551.754953	1101.49535	3.6946	0.0020385	-0.45712	-0.00025222	3.2375	0.0017863	551.7545479911944	28.784	0.36805	28.784	28.675	29.043	0					13	7	3	0	0	0	0.18605	1	10480	10480		63.306	10.217	1	954610	+		30769	13645	21130	21202	31161	31161					-0.05133574837213928
QGIVPFGGITV	11	Unmodified	_QGIVPFGGITV_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;CFAP47|p.F1567Vfs*4|1|0.31|ENSG00000165164|chrX:36098829-36098830|-/G|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.3118286132812	2	544.310949	1086.60735	0.37168	0.00020231	0.27524	0.00014982	0.64692	0.00035213	544.3112763930749	37.512	0.47418	37.512	37.316	37.79	0					45	14	5	0	0	0	0.49805	1	14189	14189		44.377	1.981	1	412380			30770	5768	21131	21203	31162	31162					0.06750602511419856
QGIWSQLDH	9	Unmodified	_QGIWSQLDH_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2640991210938	2	542.26453	1082.51451	1.1244	0.00060971	-3.0898	-0.0016755	-1.9655	-0.0010658	542.263249828627	17.59	0.17414	17.59	17.488	17.662	0					11	5	3	0	0	0	0.59223	1	4213	4213		10.265	0	1	140380			30771	7656	21132	21204	31163	31163					-0.023449022219665494
QGIWSQLDH	9	Unmodified	_QGIWSQLDH_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2638549804688	2	542.26453	1082.51451	0.31267	0.00016955	-2.1693	-0.0011763	-1.8566	-0.0010068	542.2637782891185	17.891	0.26775	17.891	17.724	17.992	0					21	6	5	0	0	0	0.47473	1	5119	5119		20.947	0	1	1625500			30772	7656	21132	21204	31164	31164					-0.023449022219665494
QGKEFVSL	8	Unmodified	_QGKEFVSL_					0	0	0			REV__ENST00000322684.7_1_17:55709752-55709833:+|nuORF	REV__ENST00000322684.7_1_17:55709752-55709833:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.248291015625	2	454.247818	906.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.118	1	49.118	48.618	49.618	0								0	0	0	1.7419	1	19464	19464		42.396	3.59	1		+		30773	18338	21133	21205	31165	31165					0.024100960061332444
QGKFLVQSY	9	Unmodified	_QGKFLVQSY_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7981567382812	2	535.287474	1068.5604	1.8834	0.0010082	4.069	0.0021781	5.9524	0.0031862	535.2883751304043	42.563	0.37999	42.563	42.443	42.823	0					25	10	4	0	0	0	0.44593	1	17049	17049		37.812	3.639	1	405520	+		30774	17650	21134	21206	31166	31166					0.028857429602794582
QGKSIGTIKL	10	Unmodified	_QGKSIGTIKL_					0	0	0		tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2540893554688	2	522.824224	1043.63389	-0.041182	-2.1531E-05	1.0202	0.00053338	0.97901	0.00051185	522.8244101569688	20.153	0.11636	20.153	20.096	20.212	0					4	2	2	0	0	0	0.60281	1	6478	6478		33.922	1.1092	1	66229			30775	22651	21135	21207	31167	31167					0.11382291402765077
QGKYGNVTK	9	Unmodified	_QGKYGNVTK_					0	0	0		ENSG00000184619|ENST00000396267|KRBA2;nc|ENSG00000184619|Q6ZNG9|KRBA2	ENSG00000184619|ENST00000396267|KRBA2	ENSG00000184619|ENST00000396267|KRBA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7710876464844	2	497.769448	993.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.354	1	20.354	19.854	20.854	0								0	0	0	0.099216	1	5707	5707		71.877	2.2498	1				30776	7026	21136	21208	31168	31168					0.02732285783417865
QGLAEQKRR	9	Unmodified	_QGLAEQKRR_					0	0	0			REV__PRICKLE4|p.G186Dfs*53|1|0.53|ENSG00000278224|chr6:41786218-41786218|G/-|frameshift_variant	REV__PRICKLE4|p.G186Dfs*53|1|0.53|ENSG00000278224|chr6:41786218-41786218|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.3129272460938	2	543.312346	1084.61014	0.33208	0.00018042	2.4751	0.0013448	2.8072	0.0015252	543.3134226726191	44.759	0.07629	44.759	44.699	44.776	0					7	4	2	0	0	0	0.55379	1	16732	16732		26.693	1.2427	1	69013	+		30777	14407	21137	21209	31169	31169					0.07121870688933996
QGLAGIFAAL	10	Unmodified	_QGLAGIFAAL_					0	0	0		nc|ENSG00000174669|Q14542-3|SLC29A2;nc|ENSG00000174669|Q14542-4|SLC29A2;ENSG00000174669|ENST00000357440|SLC29A2;SLC29A2|p.A177D|1|0.07|ENSG00000174669|chr11:66368557-66368557|G/T|missense_variant	nc|ENSG00000174669|Q14542-3|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2803039550781	2	480.779285	959.544017	0.67906	0.00032648	-1.3526	-0.0006503	-0.67354	-0.00032382	480.77861509891443	42.598	0.30334	42.598	42.4	42.704	0					25	15	2	0	0	0	0.4943	1	16705	16705		45.952	1.5748	1	99323			30778	6505	21138	21210	31170	31170					0.06262661794164615
QGLEERTR	8	Unmodified	_QGLEERTR_					0	0	0		ENST00000340342.10_1_9:90341067-90342512:+|nuORF;ENST00000375894.9_1_9:90341067-90342991:+|nuORF;ENST00000482054.1_1_9:90341067-90342580:+|nuORF;ENST00000343150.9_1_9:90341067-90342580:+|nuORF	ENST00000340342.10_1_9:90341067-90342512:+|nuORF	ENST00000340342.10_1_9:90341067-90342512:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7606506347656	2	494.762155	987.509757	-0.64512	-0.00031918	-2.582	-0.0012775	-3.2271	-0.0015966	494.7609582204864	33.965	0.28716	33.965	33.782	34.069	0					10	6	2	0	0	0	0.34592	1	12978	12978		77.318	3.0625	1	188310			30779	8727	21139	21211	31171	31171					0.015502136352779416
QGLFSKVTLI	10	Unmodified	_QGLFSKVTLI_					0	0	0		nc|ENSG00000109854|Q9BUP3-2|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	nc|ENSG00000109854|Q9BUP3-2|HTATIP2	nc|ENSG00000109854|Q9BUP3-2|HTATIP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.332275390625	2	553.334424	1104.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.98	1	53.98	53.48	54.48	0								0	0	0	0.4201	1	15879	15879		23.523	0.48021	1				30780	2594	21140	21212	31172	31172					0.10615462062582992
QGLKKYVKG	9	Unmodified	_QGLKKYVKG_					0	0	0			REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.8135070800781	2	510.813659	1019.61277	0.98421	0.00050275	-1.1088	-0.0005664	-0.12462	-6.3655E-05	510.81304853648436	19.827	0.2424	19.827	19.746	19.988	0					9	5	3	0	0	0	0.47473	1	6062	6062		35.618	18.253	1	977780	+		30781	12831	21141	21213	31173	31173					0.10374326093904074
QGLKLKVS	8	Unmodified	_QGLKLKVS_					0	0	0		RB1CC1|p.E1045G|1|0.37|ENSG00000023287|chr8:52656695-52656695|T/C|missense_variant	RB1CC1|p.E1045G|1|0.37|ENSG00000023287|chr8:52656695-52656695|T/C|missense_variant	RB1CC1|p.E1045G|1|0.37|ENSG00000023287|chr8:52656695-52656695|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.781494140625	2	436.781828	871.549102	0.047786	2.0872E-05	-0.56567	-0.00024707	-0.51788	-0.0002262	436.7816177340137	20.774	0.11912	20.774	20.714	20.833	0					4	2	2	0	0	0	0.43813	1	6511	6511		66.429	5.4573	1	116990			30782	12004	21142	21214	31174	31174					0.10818965656812907
QGLLHQQQQ	9	Unmodified	_QGLLHQQQQ_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.2840576171875	2	540.283254	1078.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.397	1	12.397	11.897	12.897	0								0	0	0	0.3304	1	2448	2448		29.15	2.4566	1		+		30783	16196	21143	21215	31175	31175					0.01582189043665494
QGLLKKVGQ	9	Unmodified	_QGLLKKVGQ_					0	0	0			REV__nc|ENSG00000196104|Q9BQ16-4|SPOCK3	REV__nc|ENSG00000196104|Q9BQ16-4|SPOCK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.80548095703125	2	485.805834	969.597115	0.67235	0.00032663	-1.2617	-0.00061295	-0.58938	-0.00028632	485.80525283112974	24.493	0.27053	24.493	24.356	24.627	0					12	6	2	0	0	0	0.20551	1	8247	8247		60.972	2.742	1	842430	+		30784	17224	21144	21216	31176	31176					0.11110039576851705
QGLLQELHE	9	Unmodified	_QGLLQELHE_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7778930664062	2	533.780013	1065.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.739	1	31.739	31.239	32.239	0								0	0	0	0.30504	1	10965	10965		34.173	3.8548	1		+		30785	15070	21145	21217	31177	31177					0.015322510922715082
QGLLRSRPIR	10	Unmodified	_QGLLRSRPIR_					0	0	0			REV__ENST00000483155.5_1_9:79007484-79008822:-|nuORF	REV__ENST00000483155.5_1_9:79007484-79008822:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.2503967285156	3	399.250918	1194.73092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.207	1	54.207	53.707	54.707	0								0	0	0	0.4201	1	15923	15923		11.097	0	1		+		30786	19619	21146	21218	31178	31178					0.14134698402403956
QGLSSQAKF	9	Unmodified	_QGLSSQAKF_					0	0	0		nc|ENSG00000170419|Q8TAG5|VSTM2A;ENSG00000170419|ENST00000402613|VSTM2A;nc|ENSG00000170419|Q8TAG5-2|VSTM2A	nc|ENSG00000170419|Q8TAG5|VSTM2A	nc|ENSG00000170419|Q8TAG5|VSTM2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2562561035156	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.468	1	46.468	45.968	46.968	0								0	0	0	0.36609	1	18596	18596		20.947	3.4789	1				30787	6234	21147	21219	31179	31179					0.01412596892100737
QGMDSGKKGRR	11	Unmodified	_QGMDSGKKGRR_					0	0	0		ENST00000445000.2_1_6:2988967-2989081:+|nuORF	ENST00000445000.2_1_6:2988967-2989081:+|nuORF	ENST00000445000.2_1_6:2988967-2989081:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.2146301269531	3	407.215656	1218.62514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.971	1	29.971	29.471	30.471	0								0	0	0	0.41351	1	10759	10759		34.087	6.005	1				30788	9610	21148	21220	31180	31180					0.024569944946279065
QGNARLLDF	9	Unmodified	_QGNARLLDF_					0	0	0			REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	REV__PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2745361328125	2	517.274898	1032.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.398	1	41.398	40.898	41.898	0								0	0	0	0.13137	1	16465	16465		64.207	2.0999	1		+		30789	15283	21149	21221	31181	31181					0.02027688157704688
QGNESIVAK	9	Unmodified	_QGNESIVAK_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1;ENST00000548158.1_1_12:50393384-50398020:-|nuORF	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.25347900390625	2	473.253631	944.49271	0.67794	0.00032084	-0.87437	-0.0004138	-0.19643	-9.2962E-05	473.2531184421767	18.905	0.13695	18.905	18.816	18.953	0					7	4	2	0	0	0	0.40353	1	5620	5620		41.427	13.345	1	151570			30790	5424	21150	21222	31182	31182					0.018242930294604776
QGNESIVAK	9	Unmodified	_QGNESIVAK_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1;ENST00000548158.1_1_12:50393384-50398020:-|nuORF	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2530212402344	2	473.253631	944.49271	-0.12209	-5.7779E-05	-0.66096	-0.0003128	-0.78305	-0.00037058	473.2533072165949	18.842	0.18962	18.842	18.761	18.951	0					6	4	2	0	0	0	0.35021	1	5842	5842		45.972	6.7194	1	228740			30791	5424	21150	21222	31183	31183					0.018242930294604776
QGNMAVTVTY	10	Unmodified	_QGNMAVTVTY_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.26171875	2	542.260599	1082.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.418	1	42.418	41.918	42.918	0								0	0	0	0.40063	1	16648	16648		30.318	2.4355	1				30792	3551	21151	21223	31184	31184					-0.03130797533731311
QGNVKKSKQ	9	Unmodified	_QGNVKKSKQ_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK;ENST00000430061.2_1_6:80715671-80721208:+|nuORF;TTK|p.K192Sfs*18|6|0.28|ENSG00000112742|chr6:80010913-80010913|A/-|frameshift_variant;TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.79608154296875	2	508.795998	1015.57744	-0.39474	-0.00020084	0.9127	0.00046438	0.51795	0.00026353	508.79634629479443	18.852	0.14001	18.852	18.777	18.917	0					5	3	2	0	0	0	0.27249	1	5877	5877		52.937	1.6012	1	213620			30793	2759	21152	21224	31185	31185					0.07027663566088904
QGPGQERPSGC	11	Unmodified	_QGPGQERPSGC_					0	0	0			REV__ENST00000303941.3_1_11:113266903-113268703:+|nuORF	REV__ENST00000303941.3_1_11:113266903-113268703:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2493896484375	2	558.248554	1114.48256	1.7405	0.00097164	-0.85311	-0.00047625	0.88741	0.00049539	558.248181077668	40.119	0.39309	40.119	39.929	40.322	0					23	14	2	0	0	0	0.64626	1	15784	15784		32.751	1.2207	1	59221	+		30794	18225	21153	21225	31186	31186					-0.07010637967391631
QGPILLIVGQ	10	Unmodified	_QGPILLIVGQ_					0	0	0		ENSG00000177465|ENST00000326303|ACOT4	ENSG00000177465|ENST00000326303|ACOT4	ENSG00000177465|ENST00000326303|ACOT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.3213500976562	2	519.321317	1036.62808	-0.3107	-0.00016135	0.55365	0.00028752	0.24295	0.00012617	519.3215486998836	20.805	0.1166	20.805	20.747	20.863	0					4	2	2	0	0	0	0.48965	1	6809	6809		34.173	0	1	753380			30795	6668	21154	21226	31187	31187					0.11123192891091094
QGPNIIPAD	9	Unmodified	_QGPNIIPAD_					0	0	0		nc|ENSG00000187726|P59910-2|DNAJB13;DNAJB13|p.L230Pfs*5|1|0.35|ENSG00000187726|chr11:73968424-73968425|-/CC|frameshift_variant;DNAJB13|p.Q305Rfs*11|1|0.08|ENSG00000187726|chr11:73970073-73970073|C/-|frameshift_variant;ENSG00000187726|ENST00000339764|DNAJB13	nc|ENSG00000187726|P59910-2|DNAJB13	nc|ENSG00000187726|P59910-2|DNAJB13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7427062988281	2	462.742899	923.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.889	1	37.889	37.389	38.389	0								0	0	0	0.1219	1	14851	14851		66.429	0	1				30796	825	21155	21227	31188	31188					0.006449080007541852
QGPNPVVVVL	10	Unmodified	_QGPNPVVVVL_					0	0	0		ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.30548095703125	2	511.305667	1020.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.457	1	42.457	41.957	42.957	0								0	0	0	0.3639	1	16946	16946		40.778	1.972	1				30797	3037	21156	21228	31189	31189					0.08730619856999056
QGPPGTGKTY	10	Unmodified	_QGPPGTGKTY_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.25347900390625	2	503.253631	1004.49271	-2.0497	-0.0010315	0.9843	0.00049535	-1.0654	-0.00053617	503.2544971944259	22.462	0.15472	22.462	22.362	22.517	0					5	3	2	0	0	0	0.5276	1	6708	6708		42.338	1.7655	1	108820			30798	3354	21157	21229	31190	31190					-0.009357069705401955
QGPSHVFVA	9	Unmodified	_QGPSHVFVA_					0	0	0		ENST00000251473.9_1_19:11474847-11475128:+|nuORF	ENST00000251473.9_1_19:11474847-11475128:+|nuORF	ENST00000251473.9_1_19:11474847-11475128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2432861328125	2	471.245609	940.476666	-2.3483	-0.0011066	-2.8916	-0.0013626	-5.2398	-0.0024692	471.2442153068736	20.733	0.23934	20.733	20.586	20.825	0					9	5	2	0	0	0	0.53083	1	5897	5897		29.15	2.4566	1	82260			30799	8243	21158	21230	31191	31191					0.0040463158322836534
QGPTQEDCTT	10	Unmodified	_QGPTQEDCTT_					0	0	0		nc|ENSG00000099139|Q92824|PCSK5;ENSG00000099139|ENST00000674117|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2203979492188	2	540.219128	1078.4237	3.4725	0.0018759	-0.74792	-0.00040404	2.7246	0.0014719	540.2185191348274	13.185	0.3001	13.185	13.08	13.38	0					16	6	5	0	0	0	0.56931	1	2986	2986		37.812	7.3079	1	2594000			30800	1926	21159	21231	31192	31192					-0.11237159052416246
QGPVQLTTGTV	11	Unmodified	_QGPVQLTTGTV_					0	0	0			REV__ENSG00000103479|ENST00000262133|RBL2	REV__ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8041381835938	2	550.800946	1099.58734	1.8312	0.0010087	4.3281	0.0023839	6.1593	0.0033926	550.8035133654051	31.377	0.13189	31.377	31.331	31.463	0					5	3	2	0	0	0	0.51875	1	11430	11430		42.864	0.46813	1	90984	+		30801	13681	21160	21232	31193	31193					0.041528067808030755
QGQANTLLQ	9	Unmodified	_QGQANTLLQ_					0	0	0			REV__ENSG00000106536|ENST00000518318|POU6F2	REV__ENSG00000106536|ENST00000518318|POU6F2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7611389160156	2	486.759081	971.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.97	1	37.97	37.47	38.47	0								0	0	0	0.3119	1	13592	13592		32.812	0	1		+		30802	13826	21161	21233	31194	31194					0.016716954037633514
QGQCGPLV	8	Carbamidomethyl (C)	_QGQC(Carbamidomethyl (C))GPLV_	QGQC(1)GPLV		QGQC(45)GPLV		0	1	0		ENST00000445792.7_1_X:305849-322301:-|nuORF	ENST00000445792.7_1_X:305849-322301:-|nuORF	ENST00000445792.7_1_X:305849-322301:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.7101745605469	2	429.710545	857.406537	-0.24283	-0.00010435	-0.15339	-6.5914E-05	-0.39622	-0.00017026	429.7104875001879	24.104	0.26156	24.104	24.014	24.275	0					13	8	2	0	0	0	0.6282	1	7067	7067		44.531	9.3304	1	94445			30803	9614	21162	21234	31195	31195	396				-0.02786990076890561
QGQKIPPDL	9	Unmodified	_QGQKIPPDL_					0	0	0			REV__ENST00000293880.9_1_11:57098199-57100416:-|nuORF	REV__ENST00000293880.9_1_11:57098199-57100416:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.279052734375	2	498.279649	994.544745	-2.2328	-0.0011125	2.6544	0.0013227	0.42168	0.00021011	498.2808075580759	36.247	0.091373	36.247	36.182	36.273	0					5	3	2	0	0	0	0.54267	1	12962	12962		27.882	4.8398	1	53937	+		30804	15403	21163	21235	31196	31196					0.04725456443236453
QGQLTKEL	8	Unmodified	_QGQLTKEL_					0	0	0		ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000254206|ENST00000698511|NPIPB11;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000169246|Q92617|NPIPB3;nc|ENSG00000169246|Q92617-6|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-5|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;ENSG00000255524|ENST00000683297|NPIPB8;ENSG00000254852|ENST00000529166|NPIPA2;ENSG00000224712|ENST00000531598|NPIPA3	ENSG00000198064|ENST00000697092|NPIPB13	ENSG00000198064|ENST00000697092|NPIPB13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7582702636719	2	458.758549	915.502546	-0.15783	-7.2407E-05	-0.29371	-0.00013474	-0.45155	-0.00020715	458.75837288530136	16.622	0.2659	16.622	16.43	16.696	0					10	5	3	0	0	0	0.25102	1	4778	4778		99.375	0	1	405150			30805	7526	21164	21236	31197	31197					0.04141481034844219
QGQRPRPVAL	10	Unmodified	_QGQRPRPVAL_					0	0	0		ENST00000511685.5_2_4:183721546-183721825:+|nuORF	ENST00000511685.5_2_4:183721546-183721825:+|nuORF	ENST00000511685.5_2_4:183721546-183721825:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.3323974609375	2	561.330539	1120.64652	1.8256	0.0010248	1.3666	0.00076713	3.1922	0.0017919	561.331434222806	36.949	0.17111	36.949	36.894	37.065	0					9	5	2	0	0	0	0.59277	1	14424	14424		10.866	0	1	138030			30806	10238	21165	21237	31198	31198					0.09102747585643556
QGQVTEDAGI	10	Unmodified	_QGQVTEDAGI_					0	0	0			REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF	REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.24609375	2	509.246003	1016.47745	-0.40314	-0.0002053	0.57753	0.00029411	0.17439	8.8806E-05	509.2462526053525	19.455	0.16365	19.455	19.347	19.511	0					5	3	2	0	0	0	0.47859	1	6143	6143		47.657	1.6851	1	122200	+		30807	19727	21166	21238	31199	31199					-0.03012618558398117
QGRAQRPFC	9	Unmodified	_QGRAQRPFC_					0	0	0		ENST00000519478.1_1_5:139248990-139250660:-|nuORF	ENST00000519478.1_1_5:139248990-139250660:-|nuORF	ENST00000519478.1_1_5:139248990-139250660:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7674560546875	2	531.766717	1061.51888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.385	1	20.385	19.885	20.885	0								0	0	0	0.28164	1	6598	6598		38.806	1.647	1				30808	10287	21167	21239	31200	31200					-0.009417162800446022
QGRDYSKRR	9	Unmodified	_QGRDYSKRR_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.2108459472656	3	389.21101	1164.6112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.595	1	12.595	12.095	13.095	0								0	0	0	0.28666	1	2685	2685		37.508	4.4688	1		+		30809	14170	21168	21240	31201	31201					0.03548085057832395
QGRGRGLLV	9	Unmodified	_QGRGRGLLV_					0	0	0			REV__GLUD2|p.A28V|1|0.71|ENSG00000182890|chrX:121047767-121047767|C/T|missense_variant	REV__GLUD2|p.A28V|1|0.71|ENSG00000182890|chrX:121047767-121047767|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2947998046875	2	478.293425	954.572297	-0.43578	-0.00020843	3.173	0.0015176	2.7373	0.0013092	478.2948975643364	34.159	0.22988	34.159	34.028	34.258	0					8	5	2	0	0	0	0.51817	1	13137	13137		30.504	1.3541	1	82510	+		30810	20694	21169	21241	31202	31202					0.09319404494135597
QGRKPAHMY	9	Unmodified	_QGRKPAHMY_					0	0	0			REV__nc|ENSG00000030066|Q12769-3|NUP160	REV__nc|ENSG00000030066|Q12769-3|NUP160	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2557373046875	2	544.276918	1086.53928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.128	1	34.128	33.628	34.628	0								0	0	0	0.30835	1	11142	11142		33.516	4.366	1		+		30811	12964	21170	21242	31203	31203					-0.0005254562024674669
QGRLATAGLG	10	Unmodified	_QGRLATAGLG_					0	0	0		ENST00000459905.5_1_9:139837219-139837813:-|nuORF;ENST00000325285.7_2_9:139837107-139837825:-|nuORF	ENST00000459905.5_1_9:139837219-139837813:-|nuORF	ENST00000459905.5_1_9:139837219-139837813:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.26959228515625	2	472.269616	942.524678	-0.73252	-0.00034595	0.68118	0.0003217	-0.051339	-2.4246E-05	472.269879122562	12.924	0.2665	12.924	12.832	13.098	0					13	6	3	0	0	0	0.21754	1	3032	3032		77.318	0.54344	1	1172500			30812	8644	21171	21243	31204	31204					0.05111705503293251
QGRLAVTTHGL	11	Unmodified	_QGRLAVTTHGL_					0	0	0		ENSG00000180210|ENST00000311907|F2	ENSG00000180210|ENST00000311907|F2	ENSG00000180210|ENST00000311907|F2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	385.2220153808594	3	384.887645	1151.64111	-0.14364	-5.5287E-05	0.35528	0.00013674	0.21164	8.1458E-05	385.222149046406	15.698	0.087101	15.698	15.671	15.758	0					5	3	2	0	0	0	0.72624	1	3579	3579		25.126	1.7481	1	84678			30813	6796	21172	21244	31205	31205					0.07135024003173385
QGRLDKKTL	9	Unmodified	_QGRLDKKTL_					0	0	0			REV__nc|ENSG00000131626|Q13136-2|PPFIA1	REV__nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2798461914062	2	529.819473	1057.62439	0.11443	6.0626E-05	-1.2809	-0.00067866	-1.1665	-0.00061803	530.3187291367925	38.514	0.252	38.514	38.305	38.557	0					10	8	2	0	0	0	0.50858	1	14593	14593		31.53	1.2121	1	64415	+		30814	14629	21173	21245	31206	31206					0.09788523117231307
QGRLGSVPAT	10	Unmodified	_QGRLGSVPAT_					0	0	0		ENST00000491449.5_1_22:50658476-50664613:-|nuORF	ENST00000491449.5_1_22:50658476-50664613:-|nuORF	ENST00000491449.5_1_22:50658476-50664613:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2746276855469	2	493.274898	984.535243	0.62166	0.00030665	-0.99928	-0.00049292	-0.37762	-0.00018627	493.2743363365767	18.25	0.17078	18.25	18.139	18.309	0					6	3	2	0	0	0	0.67098	1	5582	5582		25.574	1.0549	1	656640			30815	10072	21174	21246	31207	31207					0.04235688157700679
QGRRIVFH	8	Unmodified	_QGRRIVFH_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7928466796875	2	506.793592	1011.57263	-0.21175	-0.00010731	-0.83019	-0.00042074	-1.0419	-0.00052805	506.7930959982609	15.17	0.36813	15.17	15.012	15.38	0					13	7	2	0	0	0	0.68754	1	3978	3978		35.201	4.6319	1	132120	+		30816	14120	21175	21247	31208	31208					0.06730824213980213
QGRSCPEPAT	10	Unmodified	_QGRSCPEPAT_					0	0	0		ENST00000521367.5_1_5:141017057-141018376:+|nuORF;ENST00000444782.5_1_5:141017057-141017809:+|nuORF;ENST00000520674.5_1_5:141017057-141017459:+|nuORF	ENST00000521367.5_1_5:141017057-141018376:+|nuORF	ENST00000521367.5_1_5:141017057-141018376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2404174804688	2	523.240198	1044.46584	0.088267	4.6185E-05	-0.057168	-2.9913E-05	0.031099	1.6272E-05	523.2400769606836	11.862	1.3685	11.862	11.677	13.046	0					127	44	5	0	0	0	0.63224	1	2571	2571		30.318	1.1682	1	26077000			30817	9607	21176	21248	31209	31209					-0.0546113885336581
QGRSEGEGKP	10	Unmodified	_QGRSEGEGKP_					0	0	0		ENSG00000196507|ENST00000372627|TCEAL3	ENSG00000196507|ENST00000372627|TCEAL3	ENSG00000196507|ENST00000372627|TCEAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7569580078125	2	522.757069	1043.49959	1.7976	0.00093973	-0.4248	-0.00022207	1.3728	0.00071767	522.7565512172405	11.524	0.26515	11.524	11.397	11.663	0					10	7	2	0	0	0	0.44292	1	2418	2418		51.528	0.1923	1	39058			30818	7372	21177	21249	31210	31210					-0.02042394089926347
QGRTARAVA	9	Unmodified	_QGRTARAVA_					0	0	0			REV__ENST00000327492.3_1_22:41842635-41842764:-|nuORF	REV__ENST00000327492.3_1_22:41842635-41842764:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2635498046875	2	465.267407	928.520262	-0.68145	-0.00031706	-2.9177	-0.0013575	-3.5992	-0.0016746	465.26602419901155	30.007	0.76165	30.007	29.644	30.405	0					56	19	4	0	0	0	0.56424	1	10655	10655		25.574	0.12388	1	2298400	+		30819	18363	21178	21250	31211	31211					0.05314241080361626
QGRTYTLIYRR	11	Unmodified	_QGRTYTLIYRR_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.26763916015625	3	476.268637	1425.78408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.403	1	43.403	42.903	43.903	0								0	0	0	0.28948	1	17366	17366		53.597	13.724	1				30820	11590	21179	21251	31212	31212					0.08822031394402075
QGRWKGRPT	9	Unmodified	_QGRWKGRPT_					0	0	0			REV__ENSG00000141524|ENST00000590602|TMC6	REV__ENSG00000141524|ENST00000590602|TMC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.3023681640625	2	543.301781	1084.58901	1.0772	0.00058522	0.35241	0.00019146	1.4296	0.00077669	543.3019334900482	17.505	0.16532	17.505	17.411	17.577	0					9	5	2	0	0	0	0.19952	1	4373	4373		54.776	0	1	165700	+		30821	15121	21180	21252	31213	31213					0.050099053800977345
QGSASSHNSAS	11	Unmodified	_QGSASSHNSAS_					0	0	0		TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7216186523438	2	516.720684	1031.42681	-0.50956	-0.0002633	2.4855	0.0012843	1.976	0.001021	516.7219272971563	15.558	0.16828	15.558	15.5	15.669	0					5	3	2	0	0	0	0.49805	1	4291	4291		44.377	0.26039	1	541430			30822	2012;11458	21181	21253	31214	31214					-0.08764147883380247
QGSLTRCAPLS	11	Unmodified	_QGSLTRCAPLS_					0	0	0			REV__PEAR1|p.G784Afs*136|1|0.49|ENSG00000187800|chr1:156912905-156912905|A/-|frameshift_variant	REV__PEAR1|p.G784Afs*136|1|0.49|ENSG00000187800|chr1:156912905-156912905|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.7913818359375	2	566.792598	1131.57064	1.7671	0.0010016	-4.4706	-0.0025339	-2.7034	-0.0015323	566.7903842087228	17.424	0.12082	17.424	17.39	17.511	0					6	3	2	0	0	0	0.55715	1	4924	4924		40.058	0.80534	1	410750	+		30823	21356	21182	21254	31215	31215					0.01011982623208496
QGSLTVQCAY	10	Unmodified	_QGSLTVQCAY_					0	0	0		ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.25341796875	2	535.252774	1068.491	-0.60382	-0.00032319	-0.68879	-0.00036868	-1.2926	-0.00069187	535.2525498554467	28.623	0.10045	28.623	28.574	28.674	0					7	4	2	0	0	0	0.61187	1	9255	9255		32.812	0.85756	1	45365			30824	7694	21183	21255	31216	31216					-0.040510840507977264
QGSPQRTATTV	11	Unmodified	_QGSPQRTATTV_					0	0	0		ENST00000573058.1_1_17:79225874-79226105:-|nuORF	ENST00000573058.1_1_17:79225874-79226105:-|nuORF	ENST00000573058.1_1_17:79225874-79226105:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	382.536376953125	3	382.53516	1144.58365	0.53322	0.00020398	2.4313	0.00093008	2.9646	0.0011341	382.536053359026	23.734	0.16614	23.734	23.622	23.788	0					8	5	2	0	0	0	0.77686	1	6913	6913		17.833	17.833	1	53056			30825	10815	21184	21256	31217	31217					0.017141370069339246
QGSSVFPI	8	Unmodified	_QGSSVFPI_					0	0	0		ENST00000578730.1_1_4:1244819-1245182:+|nuORF	ENST00000578730.1_1_4:1244819-1245182:+|nuORF	ENST00000578730.1_1_4:1244819-1245182:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.7215576171875	2	417.721436	833.428318	0.069946	2.9218E-05	-0.21414	-8.9452E-05	-0.1442	-6.0234E-05	417.7213069087297	23.221	0.26685	23.221	23.111	23.378	0					9	5	2	0	0	0	0.61938	1	8009	8009		45.952	5.3793	1	83824			30826	10854	21185	21257	31218	31218					0.004941379433262227
QGTLQQVL	8	Unmodified	_QGTLQQVL_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.7530822753906	2	443.753267	885.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.515	1	25.515	25.015	26.015	0								0	0	0	1.7419	1	8944	8944		79.451	2.1334	1		+		30827	16871	21186	21258	31219	31219					0.04465498380432109
QGTPSAPAAAT	11	Unmodified	_QGTPSAPAAAT_					0	0	0		ENSG00000112305|ENST00000370455|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;nc|ENSG00000112305|Q8IYB5-3|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2431335449219	2	486.243264	970.471974	2.5167	0.0012237	-2.0515	-0.00099753	0.46523	0.00022621	486.2422025221273	13.99	0.25448	13.99	13.834	14.088	0					10	5	3	0	0	0	0.48922	1	3369	3369		45.022	4.964	1	293020			30828	2734	21187	21259	31220	31220					-0.014442973502127643
QGTQTQVHASK	11	Unmodified	_QGTQTQVHASK_					0	0	0			REV__nc|ENSG00000095794|Q03060-1|CREM	REV__nc|ENSG00000095794|Q03060-1|CREM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.8048095703125	2	592.804551	1183.59455	0.28328	0.00016793	-0.12232	-7.2511E-05	0.16097	9.5422E-05	592.8045814434766	14.374	0.16666	14.374	14.289	14.456	0					9	4	3	0	0	0	0.40021	1	3493	3493		51.528	5.5555	1	968990	+		30829	20952	21188	21260	31221	31221					0.010095393812207476
QGVFLARYG	9	Unmodified	_QGVFLARYG_					0	0	0		CYP2D6|p.L372Wfs*3|1|0.39|ENSG00000100197|chr22:42127506-42127506|G/-|frameshift_variant;ENSG00000100197|ENST00000645361|CYP2D6	CYP2D6|p.L372Wfs*3|1|0.39|ENSG00000100197|chr22:42127506-42127506|G/-|frameshift_variant	CYP2D6|p.L372Wfs*3|1|0.39|ENSG00000100197|chr22:42127506-42127506|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.7723083496094	2	505.774534	1009.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.794	1	17.794	17.294	18.294	0								0	0	0	0.32356	1	4314	4314		30.504	1.3541	1				30830	728	21189	21261	31222	31222					0.030128935086509046
QGVICREL	8	Unmodified	_QGVICREL_					0	0	0			REV__FAM200B|p.R279C|2|0.32|ENSG00000237765|chr4:15687812-15687812|C/T|missense_variant	REV__FAM200B|p.R279C|2|0.32|ENSG00000237765|chr4:15687812-15687812|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.24859619140625	2	459.247295	916.480036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.844	1	22.844	22.344	23.344	0								0	0	0	1.7419	1	7480	7480		68.787	0	1		+		30831	20659	21190	21262	31223	31223					0.018455583655850205
QGVILLIPGQ	10	Unmodified	_QGVILLIPGQ_					0	0	0			REV__ENSG00000177465|ENST00000326303|ACOT4	REV__ENSG00000177465|ENST00000326303|ACOT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.3214721679688	2	519.321317	1036.62808	0.56734	0.00029463	-0.4417	-0.00022938	0.12564	6.5248E-05	519.321277781112	20.535	0.14234	20.535	20.454	20.596	0					10	4	3	0	0	0	0.36647	1	5529	5529		56.721	15.943	1	142530	+		30832	16696	21191	21263	31224	31224					0.11123192891068356
QGVLGIKVKL	10	Unmodified	_QGVLGIKVKL_					0	0	0		ENST00000421346.1_1_20:37166917-37166977:+|nuORF	ENST00000421346.1_1_20:37166917-37166977:+|nuORF	ENST00000421346.1_1_20:37166917-37166977:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.8544921875	2	527.852784	1053.69102	2.0092	0.0010606	0.64584	0.00034091	2.655	0.0014015	527.8530285421406	39.264	0.1395	39.264	39.168	39.308	0					6	4	2	0	0	0	0.52707	1	14951	14951		42.396	0	1	38333			30833	9399	21192	21264	31225	31225					0.1663175867913651
QGWRHIKL	8	Unmodified	_QGWRHIKL_					0	0	0			REV__ENST00000231368.9_1_5:96364479-96364578:+|nuORF	REV__ENST00000231368.9_1_5:96364479-96364578:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.3038940429688	2	519.303793	1036.59303	0.18081	9.3897E-05	0.13451	6.9852E-05	0.31532	0.00016375	519.3037783032909	37.717	0.1469	37.717	37.668	37.815	0					14	8	2	0	0	0	0.70598	1	12742	12742		38.806	2.3594	1	136620	+		30834	17916	21193	21265	31226	31226					0.07619994873789437
QGWRSGPTKG	10	Unmodified	_QGWRSGPTKG_					0	0	0			REV__ENST00000495690.6_1_1:156552093-156554937:+|nuORF	REV__ENST00000495690.6_1_1:156552093-156554937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.278564453125	2	537.277972	1072.54139	1.3908	0.00074724	-0.63774	-0.00034264	0.75305	0.0004046	537.27783856154	18.933	0.18734	18.933	18.826	19.013	0					13	5	3	0	0	0	0.08194	1	4800	4800		98.582	15.751	1	282020	+		30835	19014	21194	21266	31227	31227					0.008022063892440201
QGWRSGPTKG	10	Unmodified	_QGWRSGPTKG_					0	0	0			REV__ENST00000495690.6_1_1:156552093-156554937:+|nuORF	REV__ENST00000495690.6_1_1:156552093-156554937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2786254882812	2	537.277972	1072.54139	0.69773	0.00037487	0.36565	0.00019646	1.0634	0.00057133	537.2781205958221	19.153	0.31312	19.153	19.047	19.36	0					13	6	3	0	0	0	0.14151	1	5879	5879		88.177	5.3464	1	1115800	+		30836	19014	21194	21266	31228	31228					0.008022063892440201
QGWVAPAKG	9	Unmodified	_QGWVAPAKG_					0	0	0			REV__RBMXL3|p.G265Afs*11|1|0.38|ENSG00000175718|chrX:115190234-115190234|G/-|frameshift_variant	REV__RBMXL3|p.G265Afs*11|1|0.38|ENSG00000175718|chrX:115190234-115190234|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2479553222656	2	457.248152	912.481751	-0.39563	-0.0001809	-0.28296	-0.00012938	-0.67859	-0.00031028	457.2481258713077	25.049	0.20865	25.049	24.977	25.186	0					8	6	2	0	0	0	0.59802	1	7479	7479		21.96	0	1	99270	+		30837	16627	21195	21267	31229	31229					0.022009354458418784
QGYDKIIFK	9	Unmodified	_QGYDKIIFK_					0	0	0		ENSG00000095110|ENST00000534921|NXPE1;nc|ENSG00000095110|Q8N323-2|NXPE1;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant	ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.2094421386719	3	371.209725	1110.60735	0.81011	0.00030072	-1.0068	-0.00037374	-0.1967	-7.3016E-05	371.20932762450127	32.355	0.2963	32.355	32.234	32.531	0					17	7	3	0	0	0	0.11898	1	11847	11847		75.043	23.851	1	608220			30838	1894	21196	21268	31230	31230					0.0564660251143323
QGYDKIIFK	9	Unmodified	_QGYDKIIFK_					0	0	0		ENSG00000095110|ENST00000534921|NXPE1;nc|ENSG00000095110|Q8N323-2|NXPE1;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant	ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.311279296875	2	556.310949	1110.60735	1.8095	0.0010066	-0.41308	-0.0002298	1.3964	0.00077684	556.3106663632643	32.344	0.65876	32.344	32.139	32.798	0					31	16	4	0	0	0	0.076532	1	11857	11857		79.713	5.4575	1	853420			30839	1894	21196	21268	31231	31231					0.0564660251143323
QGYDKIIFK	9	Unmodified	_QGYDKIIFK_					0	0	0		ENSG00000095110|ENST00000534921|NXPE1;nc|ENSG00000095110|Q8N323-2|NXPE1;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant	ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3115234375	2	556.310949	1110.60735	1.823	0.0010141	-0.58449	-0.00032516	1.2385	0.00068898	556.3105683097	32.311	0.62531	32.311	32.051	32.676	0					28	12	4	0	0	0	0.12278	1	12155	12155		67.494	29.682	1	1321000			30840	1894	21196	21268	31232	31232					0.0564660251143323
QGYPIWGK	8	Unmodified	_QGYPIWGK_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.750244140625	2	474.750527	947.486502	0.65763	0.00031221	-0.52853	-0.00025092	0.1291	6.1292E-05	474.7502212876971	15.879	0.18276	15.879	15.824	16.007	0					7	4	2	0	0	0	0.25001	1	4202	4202		101.21	10.435	1	211840			30841	11626	21197	21269	31233	31233					0.01065819588609429
QHADEIYHQTA	11	Unmodified	_QHADEIYHQTA_					0	0	0		ENST00000375165.5_1_9:100368507-100388213:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	ENST00000375165.5_1_9:100368507-100388213:-|nuORF	ENST00000375165.5_1_9:100368507-100388213:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	656.79736328125	2	656.799466	1311.58438	-2.4511	-0.0016099	-0.75563	-0.0004963	-3.2067	-0.0021062	656.7989676823018	15.371	0.11655	15.371	15.293	15.41	0					5	3	2	0	0	0	0.23231	1	3439	3439		61.691	28.879	1	175660			30842	4127	21198	21270	31234	31234					-0.05895068344034371
QHADEIYHQTA	11	Unmodified	_QHADEIYHQTA_					0	0	0		ENST00000375165.5_1_9:100368507-100388213:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	ENST00000375165.5_1_9:100368507-100388213:-|nuORF	ENST00000375165.5_1_9:100368507-100388213:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	656.7977294921875	2	656.799466	1311.58438	-1.9253	-0.0012646	-1.1234	-0.00073783	-3.0487	-0.0020024	656.7989142708662	15.588	0.36779	15.588	15.481	15.849	0					17	7	4	0	0	0	0.37395	1	4153	4153		61.691	18.827	1	1167900			30843	4127	21198	21270	31235	31235					-0.05895068344034371
QHAPEKWEL	9	Unmodified	_QHAPEKWEL_					0	0	0		tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2894897460938	2	569.288005	1136.56146	1.6332	0.00092974	-1.9497	-0.0011099	-0.31653	-0.0001802	569.2872638927911	26.29	1.5786	26.29	26.185	27.763	0					90	31	5	0	0	0	0.41113	1	9429	9429		40.778	1.972	1	6685000			30844	23026	21199	21271	31236	31236					-0.001360426708288287
QHCREQWYQIF	11	Unmodified	_QHCREQWYQIF_					0	0	0			REV__ENSG00000188626|ENST00000563027|GOLGA8M	REV__ENSG00000188626|ENST00000563027|GOLGA8M	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	769.353271484375	2	769.353885	1536.69322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.615	1	19.615	19.115	20.115	0								0	0	0	0.45674	1	5949	5949		9.7057	1.012	1		+		30845	17180	21200	21272	31237	31237					-0.05366180645364693
QHCSDQQC	8	Unmodified	_QHCSDQQC_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.6689453125	2	474.668551	947.322549	-0.53491	-0.00025391	0.97699	0.00046375	0.44208	0.00020984	474.6692906448674	19.404	0.16365	19.404	19.347	19.511	0					8	3	3	0	0	0	0.66372	1	6138	6138		38.806	5.2906	1	300180	+		30846	13946	21201	21273	31238	31238					-0.1532188923609965
QHDQTQGQTQQ	11	Unmodified	_QHDQTQGQTQQ_					0	0	0			REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	649.7896728515625	2	649.789629	1297.56471	1.6692	0.0010846	-1.6666	-0.001083	0.0025952	1.6864E-06	649.7886896201113	15.173	0.10018	15.173	15.115	15.215	0					5	3	2	0	0	0	0.71641	1	3258	3258		26.063	0.48933	1	139380	+		30847	20859	21202	21274	31239	31239					-0.07217444354728286
QHDQTQGQTQQ	11	Unmodified	_QHDQTQGQTQQ_					0	0	0			REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	649.79150390625	2	649.789629	1297.56471	-2.3789	-0.0015458	2.5571	0.0016616	0.17815	0.00011576	649.791240193285	15.234	0.090611	15.234	15.174	15.265	0					5	3	2	0	0	0	0.71641	1	3363	3363		26.063	0.48933	1	95541	+		30848	20859	21202	21274	31240	31240					-0.07217444354728286
QHDQTQGQTQQ	11	Unmodified	_QHDQTQGQTQQ_					0	0	0			REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	REV__MAGEB3|p.R19Q|1|0.13|ENSG00000198798|chrX:30235980-30235980|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	649.7894897460938	2	649.789629	1297.56471	-1.4093	-0.00091577	1.2438	0.00080823	-0.1655	-0.00010754	649.7905174502074	15.406	0.24811	15.406	15.297	15.546	0					10	5	3	0	0	0	0.35529	1	4065	4065		56.434	0	1	1102400	+		30849	20859	21202	21274	31241	31241					-0.07217444354728286
QHEKSQSVQT	10	Unmodified	_QHEKSQSVQT_					0	0	0			REV__ENST00000369425.5_1_10:113915595-113915829:-|nuORF	REV__ENST00000369425.5_1_10:113915595-113915829:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.2879028320312	2	586.288734	1170.56291	0.10794	6.3286E-05	-2.3564	-0.0013815	-2.2485	-0.0013183	586.2874585597145	26.961	0.21808	26.961	26.852	27.07	0					10	4	3	0	0	0	0.46989	1	9607	9607		48.602	4.2244	1	223060	+		30850	18622	21203	21275	31242	31242					-0.015544533727052112
QHFANRVRSFV	11	Unmodified	_QHFANRVRSFV_					0	0	0			REV__nc|ENSG00000187048|Q02928-2|CYP4A11	REV__nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	680.8648071289062	2	680.865277	1359.716	0.24377	0.00016598	-1.3433	-0.00091461	-1.0995	-0.00074863	680.8644511064102	23.807	0.1554	23.807	23.74	23.895	0					12	6	3	0	0	0	0.40479	1	6933	6933		51.193	1.6567	1	197330	+		30851	17107	21204	21276	31243	31243					0.05053206534398669
QHGALGLIL	9	Unmodified	_QHGALGLIL_					0	0	0			REV__POLG|p.T326Hfs*62|1|0.16|ENSG00000140521|chr15:89328990-89328991|-/G|frameshift_variant	REV__POLG|p.T326Hfs*62|1|0.16|ENSG00000140521|chr15:89328990-89328991|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2781982421875	2	461.279452	920.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.964	1	11.964	11.464	12.464	0								0	0	0	0.37146	1	2432	2432		19.36	1.0356	1		+		30852	21395	21205	21277	31244	31244					0.08090081514046688
QHGQRSVKGA	10	Unmodified	_QHGQRSVKGA_					0	0	0			REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF	REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2903442382812	2	534.288871	1066.56319	3.3813	0.0018066	-0.19835	-0.00010597	3.1829	0.0017006	534.2887705125127	23.902	0.31522	23.902	23.747	24.062	0					14	6	3	0	0	0	0.52275	1	8162	8162		42.864	0.46813	1	1205600	+		30853	20618	21206	21278	31245	31245					0.03257011137793597
QHHAQAQY	8	Unmodified	_QHHAQAQY_					0	0	0		NID2|p.R945H|1|0.27|ENSG00000087303|chr14:52019255-52019255|C/T|missense_variant	NID2|p.R945H|1|0.27|ENSG00000087303|chr14:52019255-52019255|C/T|missense_variant	NID2|p.R945H|1|0.27|ENSG00000087303|chr14:52019255-52019255|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.7277526855469	2	491.728115	981.441677	-1.2613	-0.0006202	0.089065	4.3796E-05	-1.1722	-0.0005764	491.72849044049264	20.194	0.16327	20.194	20.085	20.248	0					9	5	2	0	0	0	0.75243	1	5606	5606		26.796	0	1	78755			30854	11855	21207	21279	31246	31246					-0.04978611224726137
QHHPHWLI	8	Unmodified	_QHHPHWLI_					0	0	0			REV__ENST00000348370.8_1_15:59373254-59373323:+|nuORF	REV__ENST00000348370.8_1_15:59373254-59373323:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2816162109375	2	534.280318	1066.54608	3.3817	0.0018068	-1.0415	-0.00055643	2.3403	0.0012504	534.2797524811759	31.149	0.70589	31.149	30.995	31.701	0					24	14	2	0	0	0	0.5676	1	11624	11624		42.474	0	1	4451000	+		30855	18492	21208	21280	31247	31247					0.015471353226530482
QHKIRRPD	8	Unmodified	_QHKIRRPD_					0	0	0		ENSG00000205730|ENST00000381440|ITPRIPL2;ITPRIPL2|p.G223Afs*56|1|0.45|ENSG00000205730|chr16:19115124-19115124|G/-|frameshift_variant;ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENSG00000205730|ENST00000381440|ITPRIPL2	ENSG00000205730|ENST00000381440|ITPRIPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.3023071289062	2	525.301781	1048.58901	0.56503	0.00029681	0.80768	0.00042428	1.3727	0.00072109	525.3022596352702	12.502	0.18278	12.502	12.457	12.64	0					10	4	3	0	0	0	0.58597	1	2684	2684		40.573	7.7602	1	355600			30856	7758	21209	21281	31248	31248					0.06665905380077675
QHKLVLLQQ	9	Unmodified	_QHKLVLLQQ_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;ENST00000479369.6_1_1:144863291-144863441:-|nuORF	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.8397216796875	2	553.837665	1105.66078	-1.1654	-0.00064543	2.7445	0.00152	1.5791	0.00087456	554.3405209936448	15.811	0.099636	15.811	15.74	15.84	0					7	4	2	0	0	0	0.35021	1	3617	3617		38.806	4.6336	1	46144			30857	6701	21210	21282	31249	31249					0.11217400013947554
QHLCRSHGWQ	10	Unmodified	_QHLCRSHGWQ_					0	0	0			REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	626.29541015625	2	626.29363	1250.57271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.839	1	13.839	13.339	14.339	0								0	0	0	0.41253	1	2900	2900		26.693	2.1737	1		+		30858	18751	21211	21283	31250	31250					-0.04255543848307752
QHLEKIRLEP	10	Unmodified	_QHLEKIRLEP_					0	0	0		CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant;ENSG00000244607|ENST00000310232|CCDC13	CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant	CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2432556152344	3	421.5787	1261.71427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.605	1	17.605	17.105	18.105	0								0	0	0	0.4201	1	4230	4230		14.694	0	1				30859	396	21212	21284	31251	31251					0.0938815272577358
QHLGAILASA	10	Unmodified	_QHLGAILASA_					0	0	0		TMEM115|p.A114Pfs*29|1|0.36|ENSG00000126062|chr3:50358724-50358724|C/-|frameshift_variant;ENSG00000126062|ENST00000266025|TMEM115	TMEM115|p.A114Pfs*29|1|0.36|ENSG00000126062|chr3:50358724-50358724|C/-|frameshift_variant	TMEM115|p.A114Pfs*29|1|0.36|ENSG00000126062|chr3:50358724-50358724|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7808532714844	2	490.779816	979.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.658	1	20.658	20.158	21.158	0								0	0	0	0.3639	1	6445	6445		40.778	5.1599	1				30860	3460	21213	21285	31252	31252					0.054488761630864246
QHLRRMPRV	9	Unmodified	_QHLRRMPRV_					0	0	0		nc|ENSG00000168081|Q13519-2|PNOC;ENSG00000168081|ENST00000301908|PNOC	nc|ENSG00000168081|Q13519-2|PNOC	nc|ENSG00000168081|Q13519-2|PNOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.8474731445312	2	596.845833	1191.67711	1.5446	0.00092191	0.83657	0.0004993	2.3812	0.0014212	596.8464912826826	32.54	0.2921	32.54	32.447	32.739	0					34	12	4	0	0	0	0.28897	1	10513	10513		53.351	53.351	1	350700			30861	6060	21214	21286	31253	31253					0.08894202699048037
QHLTEAIKE	9	Unmodified	_QHLTEAIKE_					0	0	0		ENST00000492633.5_1_1:60370173-60378128:-|nuORF;ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;CYP2J2|p.P474Qfs*6|1|0.16|ENSG00000134716|chr1:59893739-59893739|G/-|frameshift_variant;ENSG00000134716|ENST00000371204|CYP2J2	ENST00000492633.5_1_1:60370173-60378128:-|nuORF	ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7883911132812	2	534.787838	1067.56112	1.1793	0.00063067	-0.41024	-0.00021939	0.76906	0.00041128	534.7877113791457	21.32	0.086557	21.32	21.276	21.362	0					4	2	2	0	0	0	0.36892	1	5864	5864		44.377	1.981	1	192040			30862	729	21215	21287	31254	31254					0.03004537609331237
QHLVKSAAS	9	Unmodified	_QHLVKSAAS_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7632751464844	2	470.764166	939.513779	-0.43062	-0.00020272	-1.1706	-0.00055107	-1.6012	-0.00075379	470.76338113469996	16.862	0.096199	16.862	16.834	16.93	0					6	4	2	0	0	0	0.54267	1	3924	3924		27.882	3.6795	1	42756	+		30863	14725	21216	21288	31255	31255					0.04160303128992382
QHLVLTNGV	9	Unmodified	_QHLVLTNGV_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.77978515625	2	490.779816	979.545079	-0.066063	-3.2422E-05	-0.79858	-0.00039193	-0.86465	-0.00042435	490.7796496291205	20.634	0.2678	20.634	20.428	20.696	0					12	5	3	0	0	0	0.54267	1	6710	6710		27.882	2.3082	1	197650	+		30864	17279	21217	21289	31256	31256					0.05448876163075056
QHMKMVLLS	9	Unmodified	_QHMKMVLLS_					0	0	0			REV__ENST00000443101.6_1_7:112077294-112095874:+|nuORF	REV__ENST00000443101.6_1_7:112077294-112095874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.795166015625	2	543.793555	1085.57256	3.6482	0.0019838	1.0706	0.00058218	4.7188	0.002566	543.7936531534492	48.863	0.1437	48.863	48.78	48.924	0					10	7	2	0	0	0	0.45358	1	19396	19396		37.159	1.9584	1	33828	+		30865	19260	21218	21290	31257	31257					0.03319320107470958
QHQQRQSL	8	Unmodified	_QHQQRQSL_					0	0	0			REV__ENSG00000137073|ENST00000379238|UBAP2	REV__ENSG00000137073|ENST00000379238|UBAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7692260742188	2	512.767771	1023.52099	3.1436	0.0016119	-0.57321	-0.00029393	2.5703	0.001318	512.7675502849811	28.933	0.26635	28.933	28.826	29.093	0					11	5	3	0	0	0	0.32815	1	10531	10531		79.451	17.344	1	707450	+		30866	14900	21219	21291	31258	31258					0.010170357294327914
QHQRGRSKR	9	Unmodified	_QHQRGRSKR_					0	0	0		ENST00000525109.1_1_15:66585988-66599106:+|nuORF	ENST00000525109.1_1_15:66585988-66599106:+|nuORF	ENST00000525109.1_1_15:66585988-66599106:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.828125	2	576.826486	1151.63842	1.7864	0.0010304	0.93063	0.00053681	2.717	0.0015672	576.8271423516195	15.922	0.16023	15.922	15.818	15.979	0					6	3	2	0	0	0	0.43488	1	4464	4464		39.253	7.723	1	634130			30867	10354	21220	21292	31259	31259					0.06866613388910991
QHQRGRSKR	9	Unmodified	_QHQRGRSKR_					0	0	0		ENST00000525109.1_1_15:66585988-66599106:+|nuORF	ENST00000525109.1_1_15:66585988-66599106:+|nuORF	ENST00000525109.1_1_15:66585988-66599106:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.828125	2	576.826486	1151.63842	3.2907	0.0018981	-0.5105	-0.00029447	2.7802	0.0016037	576.8262337771264	15.922	0.26566	15.922	15.815	16.08	0					7	5	2	0	0	0	0.10506	1	4315	4315		71.877	13.631	1	1858100			30868	10354	21220	21292	31260	31260					0.06866613388910991
QHQRRDPQ	8	Unmodified	_QHQRRDPQ_					0	0	0		IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	IRF2BPL|p.G195Afs*17|1|0.33|ENSG00000119669|chr14:77027209-77027209|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7711791992188	2	532.770845	1063.52714	1.7625	0.000939	-0.66332	-0.0003534	1.0992	0.00058561	532.7706624626904	12.381	0.37167	12.381	12.211	12.582	0					22	11	3	0	0	0	0.64144	1	2593	2593		42.396	1.618	1	221760			30869	11228	21221	21293	31261	31261					-0.0020844603907335113
QHRGRGKT	8	Unmodified	_QHRGRGKT_					0	0	0		ENST00000579695.5_1_17:38077365-38077797:-|nuORF	ENST00000579695.5_1_17:38077365-38077797:-|nuORF	ENST00000579695.5_1_17:38077365-38077797:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2648010253906	2	470.265199	938.515845	0.60987	0.0002868	-1.4555	-0.00068449	-0.84568	-0.00039769	470.2644766218214	13.741	0.20169	13.741	13.687	13.889	0					5	4	2	0	0	0	0.61938	1	3424	3424		45.952	5.1738	1	382590			30870	10862	21222	21294	31262	31262					0.04412776657466111
QHRGSCRSR	9	Unmodified	_QHRGSCRSR_					0	0	0		ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7706298828125	2	543.770323	1085.52609	2.0006	0.0010879	-2.0762	-0.001129	-0.075575	-4.1095E-05	543.7692457307992	12.551	0.091364	12.551	12.51	12.601	0					4	2	2	0	0	0	0.50858	1	2867	2867		31.53	3.6476	1	84334			30871	9152	21223	21295	31263	31263					-0.013249836796148884
QHRIPLELCLT	11	Unmodified	_QHRIPLELCLT_					0	0	0		nc|ENSG00000168803|Q6DHV7-3|ADAL;ENSG00000168803|ENST00000562188|ADAL	nc|ENSG00000168803|Q6DHV7-3|ADAL	nc|ENSG00000168803|Q6DHV7-3|ADAL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	661.86376953125	2	661.866097	1321.71764	-1.075	-0.00071153	-1.5663	-0.0010367	-2.6413	-0.0017482	661.8645747662287	41.158	0.21168	41.158	41.048	41.26	0					13	8	2	0	0	0	0.72154	1	16166	16166		25.574	1.3422	1	118350			30872	6124	21224	21296	31264	31264					0.06965079508154304
QHRSQSSGIL	10	Unmodified	_QHRSQSSGIL_					0	0	0		ENST00000526047.1_1_11:74618188-74632322:-|nuORF	ENST00000526047.1_1_11:74618188-74632322:-|nuORF	ENST00000526047.1_1_11:74618188-74632322:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.7952880859375	2	556.793986	1111.57342	1.1276	0.00062782	1.6418	0.00091415	2.7694	0.001542	556.7948269450033	19.923	0.1528	19.923	19.827	19.98	0					6	3	2	0	0	0	0.55603	1	5520	5520		39.253	2.0937	1	134940			30873	10368	21225	21297	31265	31265					0.022095740723898416
QHRTKMYNV	9	Unmodified	_QHRTKMYNV_					0	0	0			REV__ENSG00000197265|ENST00000355904|GTF2E2	REV__ENSG00000197265|ENST00000355904|GTF2E2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.3003540039062	2	588.800757	1175.58696	-0.42111	-0.00024795	-1.2167	-0.00071637	-1.6378	-0.00096433	588.8000886600067	16.932	0.34769	16.932	16.831	17.179	0					34	13	4	0	0	0	0.45358	1	4122	4122		37.159	1.5408	1	459750	+		30874	17322	21226	21298	31266	31266					0.006191085799400753
QHSAYGPLR	9	Unmodified	_QHSAYGPLR_					0	0	0			REV__ENST00000503370.5_1_4:123814341-123838767:-|nuORF	REV__ENST00000503370.5_1_4:123814341-123838767:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7676391601562	2	514.76724	1027.51993	1.3783	0.00070949	-1.317	-0.00067794	0.061289	3.155E-05	514.7668689875804	12.89	0.14106	12.89	12.843	12.984	0					6	3	2	0	0	0	0.30951	1	3026	3026		49.442	5.0644	1	138350	+		30875	16386	21227	21299	31267	31267					0.0072682136051298585
QHSGFSSRAL	10	Unmodified	_QHSGFSSRAL_					0	0	0		ENST00000296149.8_1_3:47555066-47555204:-|nuORF	ENST00000296149.8_1_3:47555066-47555204:-|nuORF	ENST00000296149.8_1_3:47555066-47555204:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2760009765625	2	545.275429	1088.53631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.921	1	11.921	11.421	12.421	0								0	0	0	0.4201	1	2411	2411		14.137	0	1				30876	8455	21228	21300	31268	31268					-0.004420974733875482
QHSSLCKTY	9	Unmodified	_QHSSLCKTY_					0	0	0		NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant;ENSG00000174145|ENST00000309447|NWD2	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7532958984375	2	533.752941	1065.49133	1.1015	0.00058794	0.14982	7.9965E-05	1.2513	0.00066791	533.7530355307798	30.026	0.22159	30.026	29.928	30.149	0					21	8	3	0	0	0	0.0792	1	9521	9521		84.916	21.609	1	352980			30877	6473	21229	21301	31269	31269					-0.038796643309296996
QHSSLCKTY	9	Unmodified	_QHSSLCKTY_					0	0	0		NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant;ENSG00000174145|ENST00000309447|NWD2	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7532348632812	2	533.752941	1065.49133	2.2964	0.0012257	-1.4817	-0.00079086	0.81469	0.00043485	533.7520805919257	30.286	0.33082	30.286	30.206	30.537	0					25	8	4	0	0	0	0.26904	1	10914	10914		53.351	10.877	1	1500300			30878	6473	21229	21301	31270	31270					-0.038796643309296996
QHSSLCKTY	9	Unmodified	_QHSSLCKTY_					0	0	0		NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant;ENSG00000174145|ENST00000309447|NWD2	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7533569335938	2	533.752941	1065.49133	0.71318	0.00038066	-0.33513	-0.00017888	0.37805	0.00020178	533.7528936082573	30.253	0.35876	30.253	30.099	30.458	0					22	7	4	0	0	0	0.35021	1	11164	11164		45.972	1.4412	1	1692100			30879	6473	21229	21301	31271	31271					-0.038796643309296996
QHSSRRAK	8	Unmodified	_QHSSRRAK_					0	0	0		ENSG00000176444|ENST00000368361|CLK2;ENST00000497188.1_1_1:155238472-155238670:-|nuORF	ENSG00000176444|ENST00000368361|CLK2	ENSG00000176444|ENST00000368361|CLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7719421386719	2	485.270481	968.52641	0.65497	0.00031784	-0.5337	-0.00025899	0.12127	5.8851E-05	485.27006075755617	11.885	0.16722	11.885	11.791	11.958	0					7	5	2	0	0	0	0.46905	1	2370	2370		63.306	11.971	1	310180			30880	6607	21230	21302	31272	31272					0.04088759311900958
QHSVMVRP	8	Unmodified	_QHSVMVRP_					0	0	0		ENST00000482360.5_1_1:6646544-6646703:+|nuORF	ENST00000482360.5_1_1:6646544-6646703:+|nuORF	ENST00000482360.5_1_1:6646544-6646703:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.25238037109375	2	477.252911	952.49127	-0.40228	-0.00019199	0.74225	0.00035424	0.33997	0.00016225	477.25314259537356	11.965	0.24375	11.965	11.813	12.057	0					11	7	2	0	0	0	0.68754	1	2581	2581		35.201	0	1	363000			30881	9967	21231	21303	31273	31273					0.013123804597398703
QHVGIDVLK	9	Unmodified	_QHVGIDVLK_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7908630371094	2	504.795466	1007.57638	-0.052435	-2.6469E-05	-1.7566	-0.00088674	-1.8091	-0.00091321	504.7947407518547	28.246	0.81737	28.246	28.07	28.888	0					34	20	4	0	0	0	0.30841	1	9907	9907		49.536	0.094497	1	2189900			30882	1423	21232	21304	31274	31274					0.07289449197173781
QHVQGSPFTV	10	Unmodified	_QHVQGSPFTV_					0	0	0		nc|ENSG00000134253|Q9H8W5-2|TRIM45;ENSG00000134253|ENST00000256649|TRIM45	nc|ENSG00000134253|Q9H8W5-2|TRIM45	nc|ENSG00000134253|Q9H8W5-2|TRIM45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2800903320312	2	550.28018	1098.54581	0.19174	0.00010551	0.16289	8.9634E-05	0.35463	0.00019514	550.280144280246	36.053	0.33235	36.053	35.91	36.242	0					34	10	4	0	0	0	0.23612	1	14085	14085		75.043	8.614	1	2565900			30883	3903	21233	21305	31275	31275					0.0004767081213685742
QHWATGSLQ	9	Unmodified	_QHWATGSLQ_					0	0	0			REV__ENST00000373703.4_1_1:32095783-32096005:-|nuORF	REV__ENST00000373703.4_1_1:32095783-32096005:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2527465820312	2	514.251423	1026.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.64	1	11.64	11.14	12.14	0								0	0	0	0.37496	1	2433	2433		18.324	0.95945	1		+		30884	18686	21234	21306	31276	31276					-0.02389171393451761
QHYPLASSL	9	Unmodified	_QHYPLASSL_					0	0	0			REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470	REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.26580810546875	2	508.263999	1014.51345	2.9674	0.0015082	1.0425	0.00052986	4.0099	0.0020381	508.2645321689354	42.17	0.32358	42.17	42.011	42.335	0					18	8	3	0	0	0	0.44593	1	16774	16774		23.042	0	1	199670	+		30885	17302	21235	21307	31277	31277					0.006768834091303688
QIAITVPKT	9	Unmodified	_QIAITVPKT_					0	0	0		EIF4G3|p.V564*|2|0.22|ENSG00000075151|chr1:20899839-20899839|T/-|frameshift_variant;EIF4G3|p.A945Qfs*16|1|0.25|ENSG00000075151|chr1:20864482-20864482|T/-|frameshift_variant;EIF4G3|p.I1064Nfs*6|1|0.32|ENSG00000075151|chr1:20855052-20855053|-/T|frameshift_variant;EIF4G3|p.F1258Lfs*2|1|0.43|ENSG00000075151|chr1:20840975-20840975|A/-|frameshift_variant;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;ENST00000374933.3_1_1:21219982-21267875:-|nuORF;nc|ENSG00000075151|O43432-4|EIF4G3	EIF4G3|p.V564*|2|0.22|ENSG00000075151|chr1:20899839-20899839|T/-|frameshift_variant	EIF4G3|p.V564*|2|0.22|ENSG00000075151|chr1:20899839-20899839|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.076	1	38.076	37.576	38.576	0								0	0	0	0.20989	1	13625	13625		49.536	3.5638	1				30886	901	21236	21308	31278	31278					0.09987217482705546
QIAKDVKQ	8	Unmodified	_QIAKDVKQ_					0	0	0		ENSG00000110651|ENST00000263645|CD81;ENST00000531840.1_1_11:2416360-2416819:+|nuORF;ENST00000468153.1_1_11:2416081-2418093:+|nuORF	ENSG00000110651|ENST00000263645|CD81	ENSG00000110651|ENST00000263645|CD81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2738037109375	2	465.274367	928.53418	-2.3125	-0.001076	1.7948	0.00083506	-0.51777	-0.0002409	465.2753195386667	12.117	0.055859	12.117	12.082	12.138	0					5	3	2	0	0	0	0.43813	1	2328	2328		66.429	0.96389	1	61473			30887	2632	21237	21309	31279	31279					0.06705473788804284
QICDTYNQK	9	Carbamidomethyl (C)	_QIC(Carbamidomethyl (C))DTYNQK_	QIC(1)DTYNQK		QIC(67)DTYNQK		0	1	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.267822265625	2	585.266413	1168.51827	1.509	0.00088319	-0.36456	-0.00021336	1.1445	0.00066983	585.266513356426	21.251	0.19144	21.251	21.135	21.326	0					9	5	3	0	0	0	0.15163	1	5829	5829		67.494	31.875	1	79370			30888	5770	21238	21310	31280	31280	243				-0.05924600510434175
QICDTYNQK	9	Carbamidomethyl (C)	_QIC(Carbamidomethyl (C))DTYNQK_	QIC(1)DTYNQK		QIC(110)DTYNQK		0	1	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.2667846679688	2	585.266413	1168.51827	1.188	0.0006953	-1.2443	-0.00072826	-0.056307	-3.2955E-05	585.2659993266216	21.571	0.23544	21.571	21.474	21.71	0					12	5	4	0	0	0	0.028876	1	6887	6887		110.12	35.865	1	1127600			30889	5770	21238	21310	31281	31281	243				-0.05924600510434175
QICDTYNQK	9	Carbamidomethyl (C)	_QIC(Carbamidomethyl (C))DTYNQK_	QIC(1)DTYNQK		QIC(58)DTYNQK		0	1	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.2669067382812	2	585.266413	1168.51827	0.54958	0.00032165	0.1182	6.9178E-05	0.66778	0.00039083	585.2666780371018	21.364	0.15396	21.364	21.294	21.448	0					5	3	2	0	0	0	0.22837	1	6187	6187		58.23	15.366	1	67101			30890	5770	21238	21310	31282	31282	243				-0.05924600510434175
QICDTYNQK	9	Carbamidomethyl (C)	_QIC(Carbamidomethyl (C))DTYNQK_	QIC(1)DTYNQK		QIC(99)DTYNQK		0	1	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.2665405273438	2	585.266413	1168.51827	0.11216	6.5641E-05	-0.28581	-0.00016727	-0.17365	-0.00010163	585.2664711712491	21.497	0.16848	21.497	21.387	21.555	0					8	3	3	0	0	0	0.0406	1	7021	7021		98.629	50.972	1	424620			30891	5770	21238	21310	31283	31283	243				-0.05924600510434175
QICDTYNQK	9	Carbamidomethyl (C)	_QIC(Carbamidomethyl (C))DTYNQK_	QIC(1)DTYNQK		QIC(140)DTYNQK		0	1	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.2667236328125	2	585.266413	1168.51827	1.5212	0.00089031	-1.3214	-0.00077336	0.19983	0.00011695	585.2657999327449	21.479	0.16608	21.479	21.421	21.587	0					11	3	4	0	0	0	0.0086566	1	7013	7013		143.89	66.569	1	781390			30892	5770	21238	21310	31284	31284	243				-0.05924600510434175
QICHTLIMK	9	Unmodified	_QICHTLIMK_					0	0	0		nc|ENSG00000216937|Q96M83-5|CCDC7	nc|ENSG00000216937|Q96M83-5|CCDC7	nc|ENSG00000216937|Q96M83-5|CCDC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.8657531738281	3	362.864795	1085.57256	3.1272	0.0011347	-0.36198	-0.00013135	2.7652	0.0010034	362.8647828780625	30.466	0.4038	30.466	30.359	30.763	0					20	8	3	0	0	0	0.42902	1	11297	11297		31.634	1.3165	1	618020			30893	11762	21239	21311	31285	31285					0.03319320107470958
QICVALTKK	9	Unmodified	_QICVALTKK_					0	0	0		ENST00000374393.4_1_1:24840890-24840944:+|nuORF	ENST00000374393.4_1_1:24840890-24840944:+|nuORF	ENST00000374393.4_1_1:24840890-24840944:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.2037353515625	3	335.203805	1002.58959	0.6562	0.00021996	-0.84754	-0.0002841	-0.19134	-6.4139E-05	335.2035248140546	24.866	0.28851	24.866	24.786	25.074	0					19	7	4	0	0	0	0.59802	1	8438	8438		29.17	8.2231	1	655110			30894	9012	21240	21312	31286	31286					0.08839563984895449
QIDSPLSGK	9	Unmodified	_QIDSPLSGK_					0	0	0		VCAM1|p.L453Ffs*23|1|0.35|ENSG00000162692|chr1:100731346-100731347|-/T|frameshift_variant;VCAM1|p.V398Efs*10|1|0.1|ENSG00000162692|chr1:100729370-100729371|-/AGAAAGA|frameshift_variant;nc|ENSG00000162692|P19320-3|VCAM1;ENSG00000162692|ENST00000294728|VCAM1	VCAM1|p.L453Ffs*23|1|0.35|ENSG00000162692|chr1:100731346-100731347|-/T|frameshift_variant	VCAM1|p.L453Ffs*23|1|0.35|ENSG00000162692|chr1:100731346-100731347|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.75616455078125	2	472.756007	943.497461	0.22739	0.0001075	4.1334	0.0019541	4.3608	0.0020616	472.75803397595695	27.836	0.56017	27.836	27.335	27.895	0					23	13	2	0	0	0	0.40353	1	9667	9667		41.427	4.2675	1	234830			30895	23101	21241	21313	31287	31287					0.023451771722420744
QIDTSNKPP	9	Unmodified	_QIDTSNKPP_					0	0	0			REV__nc|ENSG00000165409|P16473|TSHR	REV__nc|ENSG00000165409|P16473|TSHR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2575988769531	2	500.258914	998.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.084	1	13.084	12.584	13.584	0								0	0	0	0.35507	1	2949	2949		24.203	2.2429	1		+		30896	16041	21242	21314	31288	31288					0.0039627568389732915
QIEEFDLAKR	10	Unmodified	_QIEEFDLAKR_					0	0	0			REV__ENSG00000113211|ENST00000231136|PCDHB6	REV__ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	625.3353881835938	2	624.832777	1247.651	0.042186	2.6359E-05	0.45623	0.00028507	0.49842	0.00031143	624.8326145890687	40.415	0.11015	40.415	40.331	40.441	0					8	4	2	0	0	0	0.62149	1	15917	15917		31.634	6.0602	1	73080	+		30897	14027	21243	21315	31289	31289					0.03708167217882874
QIENGGLLGP	10	Unmodified	_QIENGGLLGP_					0	0	0			REV__ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	REV__ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2715759277344	2	499.269281	996.52401	0.29371	0.00014664	4.1465	0.0020702	4.4402	0.0022168	499.2716690569292	40.962	0.1987	40.962	40.814	41.013	0					8	6	2	0	0	0	0.62149	1	13167	13167		26.693	0	1	44344	+		30898	12153	21244	21316	31290	31290					0.025608660635839442
QIFKMLPP	8	Unmodified	_QIFKMLPP_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant;USP40|p.N976Hfs*17|1|0.07|ENSG00000085982|chr2:233491251-233491252|-/TGATATGG|frameshift_variant	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2817687988281	2	487.280606	972.546659	-0.055224	-2.691E-05	3.2573	0.0015872	3.2021	0.0015603	487.2821315954201	30.326	0.14757	30.326	30.259	30.407	0					8	5	2	0	0	0	0.6282	1	9661	9661		44.531	5.5096	1	114890			30899	1740	21245	21317	31291	31291					0.05928793927478182
QIFMMHKQL	9	Unmodified	_QIFMMHKQL_					0	0	0			REV__nc|ENSG00000214946|Q86UD7-2|TBC1D26	REV__nc|ENSG00000214946|Q86UD7-2|TBC1D26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.3082275390625	2	588.306829	1174.59911	3.1885	0.0018758	0.048302	2.8416E-05	3.2368	0.0019042	588.3069301279818	36.905	1.1795	36.905	36.795	37.974	0					55	24	4	0	0	0	0.40353	1	14560	14560		42.396	10.866	1	1674200	+		30900	17590	21246	21318	31292	31292					0.018790089987987812
QIFNGTFVK	9	Unmodified	_QIFNGTFVK_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000600588.1_1_19:6593418-6593715:+|nuORF;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2908325195312	2	527.290017	1052.56548	1.2355	0.00065146	-0.24994	-0.00013179	0.98554	0.00051967	527.2899123347659	37.287	0.32529	37.287	37.209	37.534	0					38	16	4	0	0	0	0.44593	1	13342	13342		37.812	2.1932	1	966370			30901	4790	21247	21319	31293	31293					0.04130046822888289
QIFNGTFVK	9	Unmodified	_QIFNGTFVK_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000600588.1_1_19:6593418-6593715:+|nuORF;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2901611328125	2	527.290017	1052.56548	0.65722	0.00034654	0.074024	3.9032E-05	0.73124	0.00038558	527.2899004847479	37.476	0.6455	37.476	37.315	37.961	0					37	13	5	0	0	0	0.1424	1	14622	14622		69.628	0.8408	1	6822000			30902	4790	21247	21319	31294	31294					0.04130046822888289
QIFSGLANVI	10	Unmodified	_QIFSGLANVI_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.3018188476562	2	531.303124	1060.5917	0.11991	6.3708E-05	-2.5045	-0.0013307	-2.3846	-0.0012669	531.3019518564013	18.563	0.18032	18.563	18.461	18.641	0					8	4	3	0	0	0	0.28036	1	5459	5459		69.628	3.1983	1	749910	+		30903	13088	21248	21320	31295	31295					0.06382315994369492
QIGLSGPLA	9	Unmodified	_QIGLSGPLA_					0	0	0			REV__COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant	REV__COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.2496643066406	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.56	1	30.56	30.06	31.06	0								0	0	0	0.21054	1	10422	10422		49.442	1.5259	1		+		30904	12547	21249	21321	31296	31296					0.05310399868744753
QIGLSGPLAP	10	Unmodified	_QIGLSGPLAP_					0	0	0			REV__COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant	REV__COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.77581787109375	2	476.776742	951.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.356	1	14.356	13.856	14.856	0								0	0	0	0.4201	1	3027	3027		21.96	0	1		+		30905	12547	21250	21322	31297	31297					0.06122357931553779
QIGPAPPLK	9	Unmodified	_QIGPAPPLK_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7815246582031	2	460.781828	919.549102	-0.45723	-0.00021069	-0.20368	-9.3853E-05	-0.66092	-0.00030454	460.781770225186	28.418	0.56538	28.418	28.261	28.826	0					26	11	3	0	0	0	0.13519	1	10305	10305		71.296	11.002	1	504060			30906	1720	21251	21323	31298	31298					0.08610965656794178
QIHIEKLLV	9	Unmodified	_QIHIEKLLV_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.89739990234375	3	364.89737	1091.67028	-0.70277	-0.00025644	0.54647	0.0001994	-0.1563	-5.7034E-05	364.8976193625585	21.85	0.43415	21.85	21.766	22.2	0					24	13	3	0	0	0	0.60749	1	6329	6329		21.686	0	1	495930	+		30907	14122	21252	21324	31299	31299					0.12811168299458586
QIICVVGPHL	10	Unmodified	_QIICVVGPHL_					0	0	0		ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.8074951171875	2	539.807519	1077.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.805	1	24.805	24.305	25.305	0								0	0	0	0.4201	1	7792	7792		23.042	2.0956	1				30908	51	21253	21325	31300	31300					0.064789663592137
QIIDNLDLE	9	Unmodified	_QIIDNLDLE_					0	0	0			REV__ENST00000373473.5_1_20:36374873-36393614:+|nuORF	REV__ENST00000373473.5_1_20:36374873-36393614:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7802734375	2	536.779679	1071.5448	0.70257	0.00037713	0.42169	0.00022635	1.1243	0.00060348	536.7799362639446	23.489	0.1486	23.489	23.397	23.546	0					7	5	2	0	0	0	0.2873	1	6816	6816		51.335	1.7994	1	109980	+		30909	18684	21254	21326	31301	31301					0.011894116525809295
QIIGKNER	8	Unmodified	_QIIGKNER_					0	0	0			REV__ENST00000503065.1_1_5:39269751-39270728:-|nuORF	REV__ENST00000503065.1_1_5:39269751-39270728:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.277099609375	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.138	1	49.138	48.638	49.638	0								0	0	0	1.7419	1	14872	14872		29.15	2.3535	1		+		30910	19815	21255	21327	31302	31302					0.06031992020314192
QIINITMTK	9	Unmodified	_QIINITMTK_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.3050537109375	2	531.30481	1060.59507	0.72447	0.00038491	-0.041766	-2.219E-05	0.6827	0.00036272	531.3045662417969	37.077	0.20987	37.077	36.977	37.187	0					6	4	2	0	0	0	0.47473	1	14477	14477		35.152	3.6222	1	108200			30911	4171	21256	21328	31303	31303					0.06719242776716783
QIKFLKISP	9	Unmodified	_QIKFLKISP_					0	0	0			REV__ENST00000286181.7_1_2:201886800-201887648:-|nuORF	REV__ENST00000286181.7_1_2:201886800-201887648:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.56195068359375	3	358.562099	1072.66447	-0.90507	-0.00032452	0.41013	0.00014706	-0.49494	-0.00017747	358.5622202651528	30.555	0.12107	30.555	30.474	30.595	0					8	4	2	0	0	0	0.50858	1	10061	10061		31.53	3.4483	1	57966	+		30912	18144	21257	21329	31304	31304					0.13104069787800654
QIKGKSKF	8	Unmodified	_QIKGKSKF_					0	0	0			REV__BTNL3|p.S401Afs*7|2|0.29|ENSG00000168903|chr5:181005665-181005665|C/-|frameshift_variant	REV__BTNL3|p.S401Afs*7|2|0.29|ENSG00000168903|chr5:181005665-181005665|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2866516113281	2	468.287277	934.560001	-0.43465	-0.00020354	-0.23894	-0.00011189	-0.67359	-0.00031543	468.28711989633706	14.38	0.095612	14.38	14.345	14.441	0					8	5	2	0	0	0	0.46905	1	2960	2960		63.306	5.495	1	79973	+		30913	12306	21258	21330	31305	31305					0.09010368031078997
QIKKETAQI	9	Unmodified	_QIKKETAQI_					0	0	0		tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8143310546875	2	529.813856	1057.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.387	1	15.387	14.887	15.887	0								0	0	0	0.099216	1	3962	3962		71.877	0.58177	1				30914	22673	21259	21331	31306	31306					0.0866570102307378
QIKMGVTSN	9	Unmodified	_QIKMGVTSN_					0	0	0			REV__ENSG00000153531|ENST00000612156|ADPRHL1	REV__ENSG00000153531|ENST00000612156|ADPRHL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.25555419921875	2	489.257859	976.501166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.716	1	29.716	29.216	30.216	0								0	0	0	0.23445	1	9700	9700		45.972	10.354	1		+		30915	15546	21260	21332	31307	31307					0.01197523674443346
QILDPAASVT	10	Unmodified	_QILDPAASVT_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7774963378906	2	507.776939	1013.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.917	1	28.917	28.417	29.417	0								0	0	0	0.39665	1	10650	10650		31.53	4.7337	1				30916	4850	21261	21333	31308	31308					0.033097328607595955
QILHAASEP	9	Unmodified	_QILHAASEP_					0	0	0			REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2564392089844	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.713	1	47.713	47.213	48.213	0								0	0	0	0.38123	1	18179	18179		16.473	0	1		+		30917	13193	21262	21334	31309	31309					0.014125968920893683
QILHGHTDIV	10	Unmodified	_QILHGHTDIV_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.806884765625	2	566.809105	1131.60366	-1.1894	-0.00067418	-1.8009	-0.0010207	-2.9903	-0.0016949	566.8080058625767	14.309	0.066454	14.309	14.273	14.34	0					4	2	2	0	0	0	0.66699	1	3015	3015		20.947	0.95016	1	88745			30918	6981	21263	21335	31310	31310					0.04311932737573443
QILHMEPAC	9	Unmodified	_QILHMEPAC_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1;REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000196218|P21817-2|RYR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.2493286132812	2	521.246437	1040.47832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.932	1	34.932	34.432	35.432	0								0	0	0	0.22106	1	11800	11800		47.916	0.25827	1		+		30919	17234;21482;17439	21264	21336	31311	31311					-0.04029818714684552
QILVMVAPA	9	Unmodified	_QILVMVAPA_					0	0	0			REV__PCDHGC4|p.G258V|1|0.19|ENSG00000242419|chr5:141485946-141485946|G/T|missense_variant	REV__PCDHGC4|p.G258V|1|0.19|ENSG00000242419|chr5:141485946-141485946|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7777099609375	2	471.278063	940.541574	-0.58276	-0.00027464	3.0489	0.0014369	2.4662	0.0011623	471.2797632512506	18.89	0.27515	18.89	18.717	18.992	0					13	6	3	0	0	0	0.49003	1	4976	4976		33.516	3.0119	1	226880	+		30920	21348	21265	21337	31312	31312					0.06892490064865342
QILVSDIDY	9	Unmodified	_QILVSDIDY_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.77978515625	2	533.276772	1064.53899	-0.43889	-0.00023405	-1.4804	-0.00078947	-1.9193	-0.0010235	533.7786709082109	31.652	0.2724	31.652	31.524	31.796	0					21	10	3	0	0	0	0.54267	1	10525	10525		27.882	0.83493	1	93044			30921	6942	21266	21338	31313	31313					0.009303131409069465
QILWYDEE	8	Unmodified	_QILWYDEE_					0	0	0		BBOX1|p.E26del|1|0.03|ENSG00000129151|chr11:27055500-27055502|GAG/-|inframe_deletion;ENST00000527505.1_1_11:27076962-27137060:+|nuORF;BBOX1|p.R168Mfs*37|1|0.11|ENSG00000129151|chr11:27093335-27093336|-/T|frameshift_variant;BBOX1|p.Q272Vfs*10|1|0.04|ENSG00000129151|chr11:27119822-27119823|-/GTTTTTGG|frameshift_variant;ENSG00000129151|ENST00000263182|BBOX1	BBOX1|p.E26del|1|0.03|ENSG00000129151|chr11:27055500-27055502|GAG/-|inframe_deletion	BBOX1|p.E26del|1|0.03|ENSG00000129151|chr11:27055500-27055502|GAG/-|inframe_deletion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2536010742188	2	548.253297	1094.49204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.403	1	19.403	18.903	19.903	0								0	0	0	1.7419	1	5248	5248		40.573	3.4135	1				30922	279	21267	21339	31314	31314					-0.0514254641025218
QIMEEFYV	8	Unmodified	_QIMEEFYV_					0	0	0		SKIL|p.R592I|1|0.05|ENSG00000136603|chr3:170391139-170391139|G/T|missense_variant	SKIL|p.R592I|1|0.05|ENSG00000136603|chr3:170391139-170391139|G/T|missense_variant	SKIL|p.R592I|1|0.05|ENSG00000136603|chr3:170391139-170391139|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7479248046875	2	529.746793	1057.47903	0.28648	0.00015176	1.7534	0.00092888	2.0399	0.0010806	529.747599525809	23.018	0.11702	23.018	22.927	23.044	0					4	2	2	0	0	0	0.67475	1	7871	7871		37.028	10.232	1	158690			30923	22398	21268	21340	31315	31315					-0.047407007939682444
QIMKILKEL	9	Unmodified	_QIMKILKEL_					0	0	0		ENST00000434009.5_1_6:111696256-111696382:-|nuORF;REV3L|p.T1059Lfs*43|1|0.19|ENSG00000009413|chr6:111375180-111375180|T/-|frameshift_variant	ENST00000434009.5_1_6:111696256-111696382:-|nuORF	ENST00000434009.5_1_6:111696256-111696382:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.5679016113281	3	372.566744	1114.6784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.338	1	16.338	15.838	16.838	0								0	0	0	0.3693	1	4503	4503		19.997	3.99	1				30924	9514	21269	21341	31316	31316					0.1256497922458948
QIMKSIIPVVM	11	Oxidation (M)	_QIMKSIIPVVM(Oxidation (M))_		QIMKSIIPVVM(1)		QIM(-56)KSIIPVVM(56)	0	0	1		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	637.8660888671875	2	637.864177	1273.7138	1.6996	0.0010841	1.2802	0.00081659	2.9798	0.0019007	637.865054550277	20.271	0.16943	20.271	20.161	20.331	0					6	3	2	0	0	0	0.27467	1	6559	6559		65.465	9.0316	2	760810			30925	7110	21270	21342	31317	31317		284			0.08789273690058508
QIMPKKDP	8	Unmodified	_QIMPKKDP_					0	0	0		nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1;MCTS1|p.F71Lfs*12|1|0.37|ENSG00000232119|chrX:120606122-120606122|T/-|frameshift_variant;ENST00000487133.1_1_X:119739298-119742228:+|nuORF;ENSG00000101898|ENST00000394552|MCTS2;ENST00000479096.1_1_20:30135258-30136578:+|nuORF	nc|ENSG00000232119|Q9ULC4-2|MCTS1	nc|ENSG00000232119|Q9ULC4-2|MCTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2670593261719	2	478.76532	955.516088	-1.4389	-0.00068889	1.6321	0.00078139	0.19322	9.2505E-05	478.7658357876154	28.236	0.54031	28.236	27.931	28.472	0					29	19	2	0	0	0	0.64096	1	9141	9141		42.474	1.9018	1	83116			30926	7896	21271	21343	31318	31318					0.03655015542437923
QINKDDVT	8	Unmodified	_QINKDDVT_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7372741699219	2	466.737814	931.461075	-2.2403	-0.0010456	1.4117	0.0006589	-0.82859	-0.00038674	466.7383709752838	20.975	0.15582	20.975	20.908	21.064	0					7	4	2	0	0	0	0.72381	1	6005	6005		30.504	0	1	97368			30927	6512	21272	21344	31319	31319					-0.0073969972447684995
QINLLHKGS	9	Unmodified	_QINLLHKGS_					0	0	0		STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000130052|Q92502|STARD8;STARD8|p.L976Afs*8|1|0.27|ENSG00000130052|chrX:68724090-68724091|-/G|frameshift_variant;ENSG00000130052|ENST00000374599|STARD8	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2930603027344	2	505.293091	1008.57163	-0.072063	-3.6413E-05	-0.22316	-0.00011276	-0.29522	-0.00014917	505.29304402361254	23.459	0.29315	23.459	23.361	23.655	0					29	10	4	0	0	0	0.14603	1	6789	6789		68.787	7.8149	1	1247000			30928	3618	21273	21345	31320	31320					0.06768565054414921
QINLLHKGS	9	Unmodified	_QINLLHKGS_					0	0	0		STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000130052|Q92502|STARD8;STARD8|p.L976Afs*8|1|0.27|ENSG00000130052|chrX:68724090-68724091|-/G|frameshift_variant;ENSG00000130052|ENST00000374599|STARD8	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2930908203125	2	505.293091	1008.57163	-0.04852	-2.4517E-05	0.036183	1.8283E-05	-0.012338	-6.2341E-06	505.293140491067	23.776	0.79208	23.776	23.473	24.265	0					40	18	4	0	0	0	0.30951	1	7904	7904		49.442	5.0644	1	9736100			30929	3618	21273	21345	31321	31321					0.06768565054414921
QIPRNVLE	8	Unmodified	_QIPRNVLE_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7794494628906	2	484.779816	967.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.94	1	13.94	13.44	14.44	0								0	0	0	1.7419	1	3508	3508		24.203	1.1603	1				30930	6996	21274	21346	31322	31322					0.06000876163079738
QIQDSIVTK	9	Unmodified	_QIQDSIVTK_					0	0	0		ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant;ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799;ENSG00000180855|ENST00000301547|ZNF443	ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant	ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.291015625	2	516.290214	1030.56587	4.5873	0.0023684	-2.7309	-0.0014099	1.8565	0.00095849	516.2889753752976	26.428	0.17996	26.428	26.356	26.536	0					10	6	2	0	0	0	0.3269	1	8303	8303		47.96	1.9873	1	79247			30931	6820	21275	21347	31323	31323					0.051814217520814054
QIQDSIVTK	9	Unmodified	_QIQDSIVTK_					0	0	0		ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant;ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799;ENSG00000180855|ENST00000301547|ZNF443	ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant	ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.290283203125	2	516.290214	1030.56587	0.18802	9.707E-05	0.90657	0.00046805	1.0946	0.00056512	516.2904425318661	26.611	0.41683	26.611	26.451	26.868	0					17	8	3	0	0	0	0.032383	1	9432	9432		106.68	10.868	1	1243400			30932	6820	21275	21347	31324	31324					0.051814217520814054
QIQDSIVTK	9	Unmodified	_QIQDSIVTK_					0	0	0		ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant;ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799;ENSG00000180855|ENST00000301547|ZNF443	ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant	ZNF443|p.W208Gfs*34|1|0.3|ENSG00000180855|chr19:12431550-12431550|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2900390625	2	516.290214	1030.56587	1.5266	0.00078818	-3.1086	-0.0016049	-1.582	-0.00081677	516.2883274608305	26.242	0.76845	26.242	26.134	26.902	0					31	15	5	0	0	0	0.28897	1	9453	9453		51.193	10.415	1	10092000			30933	6820	21275	21347	31325	31325					0.051814217520814054
QIQELQLR	8	Unmodified	_QIQELQLR_					0	0	0			REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2979125976562	2	514.298373	1026.58219	-1.6063	-0.00082613	1.2438	0.0006397	-0.36248	-0.00018642	514.2995254040794	19.734	0.1824	19.734	19.645	19.827	0					10	4	3	0	0	0	0.63077	1	5410	5410		44.117	3.3386	1	113350	+		30934	12302	21276	21348	31326	31326					0.06996547708831713
QIQKELSVL	9	Unmodified	_QIQKELSVL_					0	0	0		ENSG00000143207|ENST00000367669|COP1;nc|ENSG00000143207|Q8NHY2-3|COP1	ENSG00000143207|ENST00000367669|COP1	ENSG00000143207|ENST00000367669|COP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3164672851562	2	529.316232	1056.61791	0.11233	5.9457E-05	1.0166	0.00053812	1.129	0.00059757	529.3164881016545	28.002	0.25243	28.002	27.912	28.165	0					12	6	3	0	0	0	0.59802	1	9854	9854		21.96	2.8564	1	597600			30935	4532	21277	21349	31327	31327					0.09186585165844008
QIQQPPVL	8	Unmodified	_QIQQPPVL_					0	0	0			REV__KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	REV__KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7710876464844	2	461.77146	921.528367	-0.82345	-0.00038024	-0.12025	-5.5527E-05	-0.94369	-0.00043577	461.77145020698276	35.655	0.33321	35.655	35.557	35.891	0					25	16	2	0	0	0	0.68754	1	12059	12059		35.201	1.6851	1	137400	+		30936	13056	21278	21350	31328	31328					0.064463752771303
QIQRYAPR	8	Unmodified	_QIQRYAPR_					0	0	0		ENST00000525189.5_1_11:119229939-119230923:-|nuORF;ENST00000532613.1_1_11:119229420-119234603:-|nuORF;nc|ENSG00000036672|O75604-2|USP2;nc|ENSG00000036672|O75604-3|USP2;nc|ENSG00000036672|O75604-4|USP2;ENSG00000036672|ENST00000260187|USP2	ENST00000525189.5_1_11:119229939-119230923:-|nuORF	ENST00000525189.5_1_11:119229939-119230923:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.290771484375	2	516.290882	1030.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.82	1	35.82	35.32	36.32	0								0	0	0	1.7419	1	12785	12785		38.806	6.8513	1				30937	1175	21279	21351	31329	31329					0.05315100631491987
QIQTVYKK	8	Unmodified	_QIQTVYKK_					0	0	0		tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2979431152344	2	504.297842	1006.58113	0.11934	6.0182E-05	-0.61591	-0.0003106	-0.49657	-0.00025042	504.29768567812005	18.645	3.1466	18.645	18.539	21.685	0					180	74	4	0	0	0	0.29286	1	5780	5780		84.916	0	1	157190000			30938	22774	21280	21352	31330	31330					0.0781033333993264
QIRKRVVRVFQ	11	Unmodified	_QIRKRVVRVFQ_					0	0	0		nc|ENSG00000181109|Q8NH57|OR52P1	nc|ENSG00000181109|Q8NH57|OR52P1	nc|ENSG00000181109|Q8NH57|OR52P1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	714.9490966796875	2	714.949144	1427.88374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.599	1	19.599	19.099	20.099	0								0	0	0	0.45674	1	5337	5337		14.137	0	1				30939	11666	21281	21353	31331	31331					0.18690893798998331
QIRLSEQY	8	Unmodified	_QIRLSEQY_					0	0	0			REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2778930664062	2	518.774731	1035.53491	1.3607	0.00070588	-0.51091	-0.00026505	0.84975	0.00044083	518.7741197297771	22.125	0.27553	22.125	22.031	22.307	0					14	6	3	0	0	0	0.63077	1	7217	7217		44.117	3.5442	1	1109600	+		30940	14471	21282	21354	31332	31332					0.018562684378366612
QIRSSSCHSR	10	Unmodified	_QIRSSSCHSR_					0	0	0		ENST00000439622.1_1_X:57148101-57148341:+|nuORF	ENST00000439622.1_1_X:57148101-57148341:+|nuORF	ENST00000439622.1_1_X:57148101-57148341:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.7847290039062	2	580.783096	1159.55164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.414	1	33.414	32.914	33.914	0								0	0	0	0.40634	1	10862	10862		28.577	0.69449	1				30941	9566	21283	21355	31333	31333					-0.021755539478590435
QISCIGKLVL	10	Unmodified	_QISCIGKLVL_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3214111328125	2	537.323002	1072.63145	-1.4244	-0.00076535	-0.65868	-0.00035393	-2.0831	-0.0011193	537.3226572880759	29.094	0.34425	29.094	28.953	29.297	0					18	9	3	0	0	0	0.62235	1	9731	9731		31.53	0	1	140780			30942	6410	21284	21356	31334	31334					0.09804119673435707
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.8059387207031	2	500.8055	999.596446	0.40627	0.00020346	-0.71446	-0.0003578	-0.30819	-0.00015434	500.80514557032916	30.595	0.33423	30.595	30.476	30.811	0					38	13	4	0	0	0	0.27249	1	9754	9754		52.937	1.6012	1	2256300			30943	1935	21285	21357	31335	31335					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.80560302734375	2	500.8055	999.596446	0.66336	0.00033221	-0.12083	-6.0514E-05	0.54253	0.0002717	500.8055776977501	30.919	0.69222	30.919	30.61	31.302	0					40	16	5	0	0	0	0.020674	1	11190	11190		120.87	5.9739	1	17244000			30944	1935	21285	21357	31336	31336					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.8050842285156	2	500.8055	999.596446	-0.44911	-0.00022492	-0.095968	-4.8061E-05	-0.54508	-0.00027298	500.8054773505534	30.675	0.30065	30.675	30.555	30.856	0					20	8	4	0	0	0	0.017421	1	10464	10464		126.24	3.0345	1	1823700			30945	1935	21285	21357	31337	31337					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.8053283691406	2	500.8055	999.596446	0.15141	7.5827E-05	-0.39784	-0.00019924	-0.24643	-0.00012341	500.80530654012586	30.658	0.26133	30.658	30.543	30.805	0					19	7	4	0	0	0	0.36892	1	10460	10460		44.377	2.9506	1	672340			30946	1935	21285	21357	31338	31338					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.80535888671875	2	500.8055	999.596446	-0.62061	-0.0003108	1.0757	0.00053872	0.45509	0.00022791	500.8061724773177	30.84	0.71259	30.84	30.529	31.241	0					38	14	7	0	0	0	0.011389	1	11447	11447		138.06	6.4462	1	11007000			30947	1935	21285	21357	31339	31339					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.80535888671875	2	500.8055	999.596446	1.1069	0.00055435	-0.93436	-0.00046793	0.17257	8.6423E-05	500.8050707319594	30.852	0.60926	30.852	30.517	31.126	0					26	12	4	0	0	0	0.13267	1	11463	11463		71.877	4.3838	1	3118800			30948	1935	21285	21357	31340	31340					0.09663200137140393
QISLSLGLCT	10	Unmodified	_QISLSLGLCT_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|359|3|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|359|3|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|359|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7824096679688	2	517.781167	1033.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.431	1	28.431	27.931	28.931	0								0	0	0	0.32041	1	9166	9166		47.657	2.6351	1				30949	11189	21286	21358	31341	31341					0.032349635057244086
QISRGSSHQ	9	Unmodified	_QISRGSSHQ_					0	0	0		SEC14L2|p.E293G|1|0.38|ENSG00000100003|chr22:30416054-30416054|A/G|missense_variant;nc|ENSG00000100003|O76054-5|SEC14L2;nc|ENSG00000100003|O76054-4|SEC14L2;ENSG00000100003|ENST00000615189|SEC14L2	SEC14L2|p.E293G|1|0.38|ENSG00000100003|chr22:30416054-30416054|A/G|missense_variant	SEC14L2|p.E293G|1|0.38|ENSG00000100003|chr22:30416054-30416054|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2526550292969	2	500.251954	998.489356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.818	1	12.818	12.318	13.318	0								0	0	0	0.3428	1	2512	2512		26.693	3.6504	1				30950	1959	21287	21359	31342	31342					-0.009949570245225914
QISSPQENR	9	Unmodified	_QISSPQENR_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.765380859375	2	529.764894	1057.51524	2.3277	0.0012331	-1.586	-0.00084022	0.74169	0.00039292	529.7642367648986	15.94	0.13563	15.94	15.856	15.991	0					5	3	2	0	0	0	0.48389	1	4235	4235		34.173	0	1	130520			30951	5771	21288	21360	31343	31343					-0.011221075729281438
QISSQAPK	8	Unmodified	_QISSQAPK_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.73748779296875	2	429.737617	857.460681	-0.4418	-0.00018986	-0.066256	-2.8473E-05	-0.50806	-0.00021833	429.73756763017616	17.435	0.30424	17.435	17.243	17.547	0					13	6	3	0	0	0	0.58597	1	5020	5020		51.335	5.3835	1	210320	+		30952	16645	21289	21361	31344	31344					0.026249253463333844
QISTAVAVLG	10	Unmodified	_QISTAVAVLG_					0	0	0		sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7825622558594	2	479.782025	957.549496	-0.11273	-5.4083E-05	0.091405	4.3854E-05	-0.02132	-1.0229E-05	479.7819755107252	26.092	0.21859	26.092	25.983	26.202	0					9	4	3	0	0	0	0.47859	1	9288	9288		47.657	1.6851	1	128290			30953	22479	21290	21362	31345	31345					0.0690234058599799
QITAVILNR	9	Unmodified	_QITAVILNR_					0	0	0		nc|ENSG00000113073|Q96Q91-4|SLC4A9;SLC4A9|p.L913Sfs*28|1|0.3|ENSG00000113073|chr5:140371615-140371615|C/-|frameshift_variant;nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.3170776367188	2	514.316566	1026.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.236	1	33.236	32.736	33.736	0								0	0	0	0.28666	1	12615	12615		37.812	0	1				30954	2777	21291	21363	31346	31346					0.10633424605566688
QITDNGAVL	9	Unmodified	_QITDNGAVL_					0	0	0		LGALS9C|p.V33D|1|0.54|ENSG00000171916|chr17:18483933-18483933|T/A|missense_variant	LGALS9C|p.V33D|1|0.54|ENSG00000171916|chr17:18483933-18483933|T/A|missense_variant	LGALS9C|p.V33D|1|0.54|ENSG00000171916|chr17:18483933-18483933|T/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7479553222656	2	465.748182	929.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.212	1	31.212	30.712	31.712	0								0	0	0	0.22284	1	10015	10015		47.657	3.1263	1				30955	11315	21292	21364	31347	31347					0.014248906551870277
QIVQRCDKK	9	Unmodified	_QIVQRCDKK_					0	0	0			REV__CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant	REV__CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.3109741210938	2	559.310958	1116.60736	1.2865	0.00071955	-0.18252	-0.00010209	1.104	0.00061746	559.3108314333012	22.021	1.2787	22.021	21.942	23.221	0					90	39	3	0	0	0	0.40353	1	6313	6313		26.693	0	1	1945700	+		30956	12391	21293	21365	31348	31348					0.053722792397593366
QIYGVFDEK	9	Unmodified	_QIYGVFDEK_					0	0	0		nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.77734375	2	549.776939	1097.53933	1.8379	0.0010104	-0.81499	-0.00044806	1.0229	0.00056236	549.7764007464006	37.144	0.19872	37.144	37.069	37.268	0					9	5	2	0	0	0	0.16806	1	14071	14071		65.465	9.0316	1	149130			30957	4931	21294	21366	31349	31349					-0.005542671392504417
QIYGVFDEK	9	Unmodified	_QIYGVFDEK_					0	0	0		nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7774658203125	2	549.776939	1097.53933	1.8228	0.0010021	1.1674	0.00064181	2.9902	0.0016439	549.776358210953	37.075	0.20793	37.075	36.963	37.171	0					11	4	4	0	0	0	0.3269	1	14469	14469		47.96	1.9873	1	380780			30958	4931	21294	21366	31350	31350					-0.005542671392504417
QIYQSLIAFG	10	Unmodified	_QIYQSLIAFG_					0	0	0		tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	380.5413818359375	3	380.541363	1138.60226	0.47864	0.00018214	-0.40288	-0.00015331	0.075761	2.883E-05	380.54115606314593	32.182	0.37959	32.182	32.081	32.46	0					15	8	3	0	0	0	0.65051	1	12219	12219		28.081	1.0342	1	852770			30959	22972	21295	21367	31351	31351					0.03850298648808348
QIYSVVLKK	9	Unmodified	_QIYSVVLKK_					0	0	0		ENST00000398632.3_1_21:42775383-42780157:+|nuORF;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2	ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000398632.3_1_21:42775383-42780157:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.8938903808594	3	359.893737	1076.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.197	1	29.197	28.697	29.697	0								0	0	0	0.37233	1	10784	10784		19.104	0	1				30960	6962	21296	21368	31352	31352					0.12411765925185136
QKAEGGGRLQ	10	Unmodified	_QKAEGGGRLQ_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.783203125	2	522.283254	1042.55196	3.4041	0.0017779	-4.2514	-0.0022204	-0.84726	-0.00044251	522.7818404705249	32.145	1.1207	32.145	31.633	32.754	0					48	22	3	0	0	0	0.2538	1	12101	12101		72.879	4.0924	1	1039500			30961	2817	21297	21369	31353	31353					0.03238189043690909
QKAFLGAAGGA	11	Unmodified	_QKAFLGAAGGA_					0	0	0			REV__BIN2|p.T500Hfs*24|1|0.33|ENSG00000110934|chr12:51291608-51291609|-/G|frameshift_variant	REV__BIN2|p.T500Hfs*24|1|0.33|ENSG00000110934|chr12:51291608-51291609|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7709045410156	2	495.771991	989.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.65	1	12.65	12.15	13.15	0								0	0	0	0.41312	1	2467	2467		34.173	8.5985	1		+		30962	12287	21298	21370	31354	31354					0.03424589646044751
QKAIYAEQL	9	Unmodified	_QKAIYAEQL_					0	0	0			REV__GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant	REV__GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2922973632812	2	532.292756	1062.57096	-0.29299	-0.00015596	0.86691	0.00046145	0.57392	0.00030549	532.2931101394236	37.39	0.26173	37.39	37.32	37.582	0					32	14	3	0	0	0	0.40353	1	12634	12634		41.427	3.6151	1	231300	+		30963	13724	21299	21371	31355	31355					0.04217725614716983
QKAKAEEKK	9	Unmodified	_QKAKAEEKK_					0	0	0		CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant;CACNA1S|p.P1346Qfs*78|1|0.24|ENSG00000081248|chr1:201051060-201051060|G/-|frameshift_variant;ENSG00000081248|ENST00000362061|CACNA1S	CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3126220703125	2	530.31148	1058.60841	0.39385	0.00020886	0.69715	0.0003697	1.091	0.00057857	530.3116672707966	20.082	0.072708	20.082	20.048	20.12	0					4	2	2	0	0	0	0.21263	1	5555	5555		60.118	3.6845	1	64757			30964	351	21300	21372	31356	31356					0.08144816880303551
QKAPAVPA	8	Unmodified	_QKAPAVPA_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.23211669921875	2	391.231971	780.449388	-2.2018	-0.0008614	0.20477	8.0112E-05	-1.997	-0.00078128	391.2318298292529	26.513	0.096399	26.513	26.456	26.552	0					4	2	2	0	0	0	0.6282	1	8555	8555		44.531	2.0566	1	34716			30965	6789	21301	21373	31357	31357					0.050381480428427494
QKAQLSLGK	9	Unmodified	_QKAQLSLGK_					0	0	0			REV__nc|ENSG00000103852|Q5W5X9-2|TTC23	REV__nc|ENSG00000103852|Q5W5X9-2|TTC23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.79522705078125	2	486.795466	971.57638	-0.085116	-4.1434E-05	-0.58096	-0.00028281	-0.66608	-0.00032424	486.7952206907735	27.924	0.21404	27.924	27.815	28.029	0					9	4	3	0	0	0	0.18416	1	10182	10182		63.534	10.597	1	264540	+		30966	13699	21302	21374	31358	31358					0.08945449197187827
QKATETEF	8	Unmodified	_QKATETEF_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2;ENST00000584498.5_1_17:62228191-62232353:-|nuORF	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2320861816406	2	477.232364	952.450176	-0.11774	-5.6189E-05	-0.16537	-7.8919E-05	-0.28311	-0.00013511	477.23216620497664	36.616	0.18984	36.616	36.539	36.729	0					7	5	2	0	0	0	0.65276	1	14283	14283		40.573	1.5511	1	223470			30967	4083	21303	21375	31359	31359					-0.027951020987757147
QKCKLPKE	8	Unmodified	_QKCKLPKE_					0	0	0			REV__ENST00000601957.5_1_19:35433558-35435739:+|nuORF	REV__ENST00000601957.5_1_19:35433558-35435739:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2810363769531	2	487.278595	972.542637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.179	1	11.179	10.679	11.679	0								0	0	0	1.7419	1	2234	2234		13.775	0	1		+		30968	16271	21304	21376	31360	31360					0.0552670443378247
QKCLKLLKK	9	Unmodified	_QKCLKLLKK_					0	0	0		ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.3622436523438	2	551.362462	1100.71037	1.1496	0.00063384	-2.2985	-0.0012673	-1.1489	-0.00063344	551.3610470436262	25.435	0.1826	25.435	25.342	25.524	0					6	4	2	0	0	0	0.30841	1	8102	8102		51.335	20.832	1	57819			30969	10933	21305	21377	31361	31361					0.1640439169837009
QKCPLAWQSK	10	Carbamidomethyl (C)	_QKC(Carbamidomethyl (C))PLAWQSK_	QKC(1)PLAWQSK		QKC(41)PLAWQSK		0	1	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.88604736328125	3	415.885135	1244.63358	1.0484	0.00043601	1.0139	0.00042168	2.0623	0.00085769	415.8855763886911	16.039	0.22003	16.039	15.98	16.2	0					8	4	3	0	0	0	0.536	1	4372	4372		41.427	8.3872	1	830870			30970	7189	21306	21378	31362	31362	306				0.02104548411216456
QKCQDVHQ	8	Unmodified	_QKCQDVHQ_					0	0	0		ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2296142578125	2	493.229633	984.444714	0.86652	0.00042739	-1.4268	-0.00070374	-0.56027	-0.00027634	493.2291229963874	18.613	0.21319	18.613	18.506	18.719	0					10	4	3	0	0	0	0.5676	1	5619	5619		53.351	3.3269	1	535820			30971	10041	21307	21379	31363	31363					-0.048131041622241355
QKDAAKENIL	10	Unmodified	_QKDAAKENIL_					0	0	0			REV__BPIFB1|p.L332Q|1|0.43|ENSG00000125999|chr20:33302929-33302929|T/A|missense_variant	REV__BPIFB1|p.L332Q|1|0.43|ENSG00000125999|chr20:33302929-33302929|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.3145141601562	2	565.31422	1128.61389	0.32065	0.00018127	1.1382	0.00064341	1.4588	0.00082468	565.3149685608146	16.042	0.3435	16.042	15.763	16.107	0					14	8	2	0	0	0	0.15878	1	4289	4289		85.161	10.906	1	271840	+		30972	12293	21308	21380	31364	31364					0.054724956721202034
QKDGIIFAL	9	Unmodified	_QKDGIIFAL_					0	0	0		ENST00000492193.1_1_2:136111018-136262059:-|nuORF;ZRANB3|p.R533Dfs*3|1|0.42|ENSG00000121988|chr2:135230870-135230870|T/-|frameshift_variant;nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3	ENST00000492193.1_1_2:136111018-136262059:-|nuORF	ENST00000492193.1_1_2:136111018-136262059:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7921142578125	2	502.792392	1003.57023	0.13405	6.7399E-05	0.76163	0.00038294	0.89568	0.00045034	502.7928140407516	36.465	0.17538	36.465	36.368	36.543	0					16	8	2	0	0	0	0.44593	1	13034	13034		37.812	2.1932	1	101180			30973	3245	21309	21381	31365	31365					0.06858930965665877
QKDLARVEK	9	Unmodified	_QKDLARVEK_					0	0	0		HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3;ENST00000460604.1_1_1:41984149-42045569:-|nuORF	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.8803405761719	3	362.880379	1085.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.088	1	27.088	26.588	27.588	0								0	0	0	0.3063	1	9774	9774		33.922	3.6039	1				30974	3499	21310	21382	31366	31366					0.07992219254606425
QKDNLQKK	8	Unmodified	_QKDNLQKK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.29058837890625	2	501.290548	1000.56654	0.67836	0.00034006	-0.048789	-2.4458E-05	0.62957	0.0003156	501.2911070338343	15.537	2.0296	15.537	15.328	17.357	0					116	49	5	0	0	0	0.27635	1	4174	4174		79.451	0	1	171490000			30975	7017	21311	21383	31367	31367					0.06628261191792717
QKDNRADGSI	10	Unmodified	_QKDNRADGSI_					0	0	0			REV__ENST00000423384.5_1_12:7168629-7169817:+|nuORF	REV__ENST00000423384.5_1_12:7168629-7169817:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.2760620117188	2	552.275626	1102.5367	0.60539	0.00033434	0.11127	6.1451E-05	0.71666	0.00039579	552.2761417040116	18.245	0.22686	18.245	18.067	18.294	0					11	5	3	0	0	0	0.52275	1	5315	5315		42.864	0	1	497790	+		30976	19097	21312	21384	31368	31368					-0.010467225441971095
QKDPDIGDLL	10	Unmodified	_QKDPDIGDLL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2931518554688	2	557.292953	1112.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.968	1	28.968	28.468	29.468	0								0	0	0	0.38879	1	9390	9390		33.922	1.1092	1				30977	7942	21313	21385	31369	31369					0.01957100543904744
QKDVPKELILG	11	Unmodified	_QKDVPKELILG_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3689575195312	2	620.368995	1238.72344	0.17618	0.0001093	-0.013097	-8.125E-06	0.16308	0.00010117	620.3689560216098	26.109	3.0531	26.109	26	29.053	0					111	62	3	0	0	0	0.37395	1	9483	9483		45.022	9.8702	1	1251000	+		30978	16293	21314	21386	31370	31370					0.11362501291455374
QKEEPLREQ	9	Unmodified	_QKEEPLREQ_					0	0	0		nc|ENSG00000166220|Q96M53-2|TBATA;nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.8018188476562	2	578.801477	1155.5884	-1.6685	-0.00096574	1.3708	0.0007934	-0.29775	-0.00017234	578.8024597412337	26.268	0.31665	26.268	26.109	26.426	0					17	7	4	0	0	0	0.17854	1	8427	8427		64.207	0	1	274410			30979	5873	21315	21387	31371	31371					0.016830211497108394
QKEEPRVRK	9	Unmodified	_QKEEPRVRK_					0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	390.5643615722656	3	390.563161	1168.66765	3.1939	0.0012474	-0.19395	-7.5748E-05	2.9999	0.0011717	390.5631029166634	14.786	0.3179	14.786	14.728	15.046	0					9	6	2	0	0	0	0.40353	1	3771	3771		41.427	0	1	451800	+		30980	16204	21316	21388	31372	31372					0.09006712894506563
QKEFLKAAS	9	Unmodified	_QKEFLKAAS_					0	0	0		ENST00000558438.1_1_15:99688849-99696475:-|nuORF	ENST00000558438.1_1_15:99688849-99696475:-|nuORF	ENST00000558438.1_1_15:99688849-99696475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2892150878906	2	511.287474	1020.5604	3.089	0.0015794	0.22837	0.00011676	3.3174	0.0016961	511.2876095239548	17.218	0.76161	17.218	17.056	17.817	0					37	15	4	0	0	0	0.087861	1	4935	4935		82.241	7.9855	1	10892000			30981	10675	21317	21389	31373	31373					0.05093742960286818
QKESVYKK	8	Unmodified	_QKESVYKK_					0	0	0			REV__nc|ENSG00000177640|Q6XLA1|CASC2	REV__nc|ENSG00000177640|Q6XLA1|CASC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2876892089844	2	505.287474	1008.5604	-0.048739	-2.4627E-05	0.97647	0.0004934	0.92773	0.00046877	505.2882788005375	14.575	2.1787	14.575	14.483	16.662	0					89	52	3	0	0	0	0.58597	1	3800	3800		51.335	0	1	53595000	+		30982	21134	21318	21390	31374	31374					0.05645742960280131
QKFGLSKLS	9	Unmodified	_QKFGLSKLS_					0	0	0			REV__WDR11|p.N1189S|1|0.06|ENSG00000120008|chr10:120908604-120908604|A/G|missense_variant	REV__WDR11|p.N1189S|1|0.06|ENSG00000120008|chr10:120908604-120908604|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53399658203125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.794	1	36.794	36.294	37.294	0								0	0	0	0.37821	1	14354	14354		18.262	9.0792	1		+		30983	22290	21319	21391	31375	31375					0.07810333339955378
QKFLEHTN	8	Unmodified	_QKFLEHTN_					0	0	0		DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;DOCK2|p.M1388Gfs*7|1|0.05|ENSG00000134516|chr5:170050344-170050345|-/AGGATGCTCATTAGAGATTT|frameshift_variant;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENST00000522994.1_1_5:169412837-169427133:+|nuORF	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8267822265625	2	508.761623	1015.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.839	1	15.839	15.339	16.339	0								0	0	0	1.7419	1	4411	4411		74.255	0	1				30984	836	21320	21392	31376	31376					0.0015599926638287798
QKFVQLIIE	9	Unmodified	_QKFVQLIIE_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2239685058594	3	373.225375	1116.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.752	1	13.752	13.252	14.252	0								0	0	0	0.3119	1	3267	3267		32.812	2.4947	1		+		30985	16181	21321	21393	31377	31377					0.10063462062566941
QKGGILDG	8	Unmodified	_QKGGILDG_					0	0	0		CON__P50448	CON__P50448	CON__P50448	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	263.14892578125	3	263.148466	786.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.176	1	45.176	44.676	45.676	0								0	0	0	1.7419	1	16847	16847		16.473	3.0191	1			+	30986	647	21322	21394	31378	31378					0.02181253800574723
QKGHELVLA	9	Unmodified	_QKGHELVLA_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.1941223144531	3	332.194186	993.56073	0.5417	0.00017995	-0.52	-0.00017274	0.021701	7.2091E-06	332.19402467555636	17.475	0.7548	17.475	16.98	17.735	0					39	15	4	0	0	0	0.61124	1	5099	5099		25.574	12.762	1	3504900			30987	2751	21323	21395	31379	31379					0.06369162680141471
QKGIRYDLC	9	Carbamidomethyl (C)	_QKGIRYDLC(Carbamidomethyl (C))_	QKGIRYDLC(1)		QKGIRYDLC(42)		0	1	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.7957153320312	2	576.79514	1151.57573	-0.34226	-0.00019741	2.1246	0.0012255	1.7824	0.0010281	576.7964738827118	28.951	0.2576	28.951	28.846	29.104	0					9	5	2	0	0	0	0.39215	1	10655	10655		42.396	7.2441	1	118370			30988	2143	21324	21396	31380	31380	81				0.006002864858373869
QKGNNQPGSA	10	Unmodified	_QKGNNQPGSA_					0	0	0			REV__ENSG00000165583|ENST00000347757|SSX5	REV__ENSG00000165583|ENST00000347757|SSX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.16448974609375	3	334.165067	999.473371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.545	1	51.545	51.045	52.045	0								0	0	0	0.4201	1	15916	15916		10.587	1.7875	1		+		30989	16052	21325	21397	31381	31381					-0.02638663261416241
QKGPAKTNKK	10	Unmodified	_QKGPAKTNKK_					0	0	0			REV__PHACTR2|p.T229Qfs*47|1|0.32|ENSG00000112419|chr6:143765277-143765277|A/-|frameshift_variant	REV__PHACTR2|p.T229Qfs*47|1|0.32|ENSG00000112419|chr6:143765277-143765277|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.333251953125	2	550.332747	1098.65094	0.54881	0.00030203	0.71588	0.00039397	1.2647	0.000696	550.3331133680334	11.945	0.097865	11.945	11.877	11.975	0					7	3	3	0	0	0	0.5155	1	2416	2416		24.519	0	1	256900	+		30990	14005	21326	21398	31382	31382					0.10556212008555121
QKGSSDLL	8	Unmodified	_QKGSSDLL_					0	0	0		FBXO30|p.N264K|1|0.16|ENSG00000118496|chr6:145805614-145805614|A/C|missense_variant	FBXO30|p.N264K|1|0.16|ENSG00000118496|chr6:145805614-145805614|A/C|missense_variant	FBXO30|p.N264K|1|0.16|ENSG00000118496|chr6:145805614-145805614|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.22943115234375	2	424.229625	846.444697	-0.022141	-9.393E-06	0.11234	4.7657E-05	0.090197	3.8264E-05	424.2295423585383	18.371	0.18554	18.371	18.301	18.487	0					9	5	2	0	0	0	0.78978	1	4777	4777		21.96	0	1	140140			30991	11134	21327	21399	31383	31383					0.015332191094330483
QKGTLGCAKK	10	Carbamidomethyl (C)	_QKGTLGC(Carbamidomethyl (C))AKK_	QKGTLGC(1)AKK		QKGTLGC(58)AKK		0	1	0		ENSG00000198796|ENST00000361673|ALPK2;ENST00000589204.1_1_18:56196243-56204256:-|nuORF	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.8037719726562	2	545.805508	1089.59646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.249	1	21.249	20.749	21.749	0								0	0	0	0.24873	1	5823	5823		58.23	10.314	1				30992	7610	21328	21400	31384	31384	327				0.05524876865456463
QKGTWLPFP	9	Unmodified	_QKGTWLPFP_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2933959960938	2	537.292559	1072.57057	-0.35681	-0.00019171	0.31329	0.00016833	-0.043519	-2.3383E-05	537.2927806354672	18.061	0.59886	18.061	17.792	18.391	0					58	19	5	0	0	0	0.54267	1	4758	4758		27.882	12.24	1	3320200	+		30993	13150	21329	21401	31385	31385					0.037183506854944426
QKIGNQVDQ	9	Unmodified	_QKIGNQVDQ_					0	0	0		ENST00000510345.2_1_4:111337808-111338090:+|nuORF	ENST00000510345.2_1_4:111337808-111338090:+|nuORF	ENST00000510345.2_1_4:111337808-111338090:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.271728515625	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.894	1	17.894	17.394	18.394	0								0	0	0	0.23445	1	4577	4577		45.972	0	1				30994	10229	21330	21402	31386	31386					0.011950804324669662
QKIHRQIE	8	Unmodified	_QKIHRQIE_					0	0	0		DSP|p.R676H|1|0.38|ENSG00000096696|chr6:7571965-7571965|G/A|missense_variant	DSP|p.R676H|1|0.38|ENSG00000096696|chr6:7571965-7571965|G/A|missense_variant	DSP|p.R676H|1|0.38|ENSG00000096696|chr6:7571965-7571965|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.3065795898438	2	526.30399	1050.59343	3.4602	0.0018211	0.88607	0.00046634	4.3463	0.0022875	526.3044835999663	21.471	0.71598	21.471	21.254	21.97	0					34	14	3	0	0	0	0.64144	1	7003	7003		42.396	0	1	804620			30995	852	21331	21403	31387	31387					0.07015369803002613
QKILNILTN	9	Unmodified	_QKILNILTN_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.826416015625	2	528.824224	1055.63389	0.71854	0.00037998	3.7131	0.0019636	4.4316	0.0023436	528.8259258814077	43.1	0.14066	43.1	42.994	43.134	0					5	3	2	0	0	0	0.22377	1	17242	17242		58.782	0	1	57855			30996	6393	21332	21404	31388	31388					0.10830291402771763
QKILVDLR	8	Unmodified	_QKILVDLR_					0	0	0			REV__nc|ENSG00000138750|Q7Z3B4-2|NUP54	REV__nc|ENSG00000138750|Q7Z3B4-2|NUP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.8136901855469	2	492.813659	983.612765	-0.071723	-3.5346E-05	-0.4994	-0.00024611	-0.57112	-0.00028146	492.8134164493829	13.722	0.30515	13.722	13.527	13.832	0					37	15	3	0	0	0	0.63077	1	2688	2688		44.117	6.9577	1	451050	+		30997	21039	21333	21405	31389	31389					0.12030326093895383
QKIMLEELQ	9	Unmodified	_QKIMLEELQ_					0	0	0		ENST00000536830.1_1_18:33751093-33754507:+|nuORF	ENST00000536830.1_1_18:33751093-33754507:+|nuORF	ENST00000536830.1_1_18:33751093-33754507:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.3055419921875	2	566.307549	1130.60055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.153	1	15.153	14.653	15.653	0								0	0	0	0.2591	1	3339	3339		42.396	9.6456	1				30998	10494	21334	21406	31390	31390					0.04046921568556172
QKIRILEK	8	Unmodified	_QKIRILEK_					0	0	0		nc|ENSG00000164631|P17014-2|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;ZNF12|p.F670Ifs*15|1|0.56|ENSG00000164631|chr7:6690934-6690935|-/T|frameshift_variant;ENSG00000164631|ENST00000405858|ZNF12	nc|ENSG00000164631|P17014-2|ZNF12	nc|ENSG00000164631|P17014-2|ZNF12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3350830078125	2	514.334759	1026.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.588	1	17.588	17.088	18.088	0								0	0	0	1.7419	1	5251	5251		74.255	0	1				30999	5713	21335	21407	31391	31391					0.14270301502278926
QKIVNELHDLR	11	Unmodified	_QKIVNELHDLR_					0	0	0			REV__ENSG00000110328|ENST00000227756|GALNT18	REV__ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	682.8865966796875	2	682.885875	1363.7572	-1.6551	-0.0011302	2.0835	0.0014228	0.42847	0.00029259	682.8874660491932	25.484	0.16008	25.484	25.375	25.535	0					5	3	2	0	0	0	0.33569	1	9061	9061		58.23	8.1964	1	457140	+		31000	13931	21336	21408	31392	31392					0.08986922783219597
QKIVQQQL	8	Unmodified	_QKIVQQQL_					0	0	0			REV__ENST00000475419.5_1_1:212220519-212220681:+|nuORF	REV__ENST00000475419.5_1_1:212220519-212220681:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.79510498046875	2	492.795466	983.57638	-0.01595	-7.86E-06	-0.2011	-9.9101E-05	-0.21705	-0.00010696	492.79543008937213	31.995	0.28971	31.995	31.886	32.175	0					11	8	2	0	0	0	0.32408	1	11070	11070		79.939	0.22664	1	466210	+		31001	19527	21337	21409	31393	31393					0.08393449197183145
QKKERKQELK	10	Unmodified	_QKKERKQELK_					0	0	0		nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;ENST00000560605.1_1_15:91524929-91537723:-|nuORF;ENST00000557763.5_1_15:91524929-91537713:-|nuORF;ENST00000417173.6_1_15:91524704-91537723:-|nuORF	nc|ENSG00000198901|O43663-4|PRC1	nc|ENSG00000198901|O43663-4|PRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.93310546875	3	438.933254	1313.77793	-0.57355	-0.00025175	0.40898	0.00017952	-0.16457	-7.2234E-05	438.93335997840893	24.287	0.51191	24.287	24.179	24.691	0					18	10	4	0	0	0	0.4947	1	8367	8367		45.908	1.2687	1	1441100			31002	7637	21338	21410	31394	31394					0.13359513162913572
QKKKAKSQQ	9	Unmodified	_QKKKAKSQQ_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1;MBTD1|p.K585N|1|0.35|ENSG00000011258|chr17:51192216-51192216|T/G|missense_variant;ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENSG00000011258|ENST00000586178|MBTD1;ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENSG00000011258|ENST00000586178|MBTD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3248901367188	2	537.324922	1072.63529	2.1023	0.0011296	-1.3334	-0.00071648	0.76883	0.00041311	537.3239686030438	13.192	0.12099	13.192	13.117	13.238	0					5	3	2	0	0	0	0.27249	1	2957	2957		52.937	10.072	1	182510			31003	1046;10907	21339	21411	31395	31395					0.10187925491527494
QKKKMPSK	8	Oxidation (M)	_QKKKM(Oxidation (M))PSK_		QKKKM(1)PSK		QKKKM(72)PSK	0	0	1			REV__nc|ENSG00000173575|O14647-2|CHD2	REV__nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2939453125	2	495.791869	989.569186	0.53837	0.00026692	0.9082	0.00045028	1.4466	0.0007172	495.79251870306916	25.745	0.14278	25.745	25.675	25.818	0					4	2	2	0	0	0	0.39125	1	8836	8836		71.877	9.7701	1	88101	+		31004	16518	21340	21412	31396	31396		630			0.07398393325127017
QKKKQSKK	8	Unmodified	_QKKKQSKK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.8249816894531	2	501.824558	1001.63456	0.043938	2.2049E-05	0.41118	0.00020634	0.45512	0.00022839	501.8248670827492	11.914	2.102	11.914	11.804	13.906	0					93	50	5	0	0	0	0.41701	2	2871	2871;3433		68.787	0	1	17484000	+		31005	16648	21341	21413	31397;31398	31397					0.13381130842469702
QKKKQSKK	8	Unmodified	_QKKKQSKK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.8249816894531	2	501.824558	1001.63456	-0.33591	-0.00016857	0.39762	0.00019953	0.061703	3.0964E-05	501.8247821439552	11.644	0.44269	11.644	11.591	12.034	0					37	25	2	0	0	0	0.27242	2	2209	2209;2298		143.89	0	1	2857600	+		31006	16648	21341	21413	31399;31400	31399					0.13381130842469702
QKKKQSKK	8	Unmodified	_QKKKQSKK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.82440185546875	2	501.824558	1001.63456	-0.55823	-0.00028013	1.472	0.00073866	0.91373	0.00045853	501.82548563847365	11.879	2.6337	11.879	11.789	14.423	0					104	62	2	0	0	0	0.2451	1	2532	2532		110.12	0	1	35868000	+		31007	16648	21341	21413	31401	31401					0.13381130842469702
QKKQEKITAR	10	Unmodified	_QKKQEKITAR_					0	0	0			REV__ENST00000394780.7_2_X:110963351-110964906:+|nuORF	REV__ENST00000394780.7_2_X:110963351-110964906:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	615.3717041015625	2	615.369861	1228.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.227	1	11.227	10.727	11.727	0								0	0	0	0.3598	1	2160	2160		41.427	4.9799	1		+		31008	18868	21342	21414	31402	31402					0.11995555100065758
QKKQQEQK	8	Unmodified	_QKKQQEQK_					0	0	0		RFX7|p.K235Sfs*10|1|0.05|ENSG00000181827|chr15:56098193-56098193|T/-|frameshift_variant;RFX7|p.S919Afs*14|1|0.11|ENSG00000181827|chr15:56094683-56094683|G/-|frameshift_variant;RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant;nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	RFX7|p.K235Sfs*10|1|0.05|ENSG00000181827|chr15:56098193-56098193|T/-|frameshift_variant	RFX7|p.K235Sfs*10|1|0.05|ENSG00000181827|chr15:56098193-56098193|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.795654296875	2	522.793455	1043.57236	3.4057	0.0017805	0.9274	0.00048484	4.3331	0.0022653	522.7939178089543	22.663	0.41769	22.663	22.555	22.973	0					11	8	2	0	0	0	0.35045	1	7585	7585		76.774	0	1	1486800			31009	6867	21343	21415	31403	31403					0.05231359703475391
QKKTKNKK	8	Unmodified	_QKKTKNKK_					0	0	0		nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1;AluSz_dup51341|chrX:2933079-2933388:+|1.2424955673970632|0.1832918428787378|2.76|472.0|6|2|sense	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.823974609375	2	501.824558	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.546	1	13.546	13.046	14.046	0								0	0	0	1.7419	1	3169	3169		60.972	0	1				31010	11508	21344	21416	31404	31404					0.13381130842458333
QKKTQETSK	9	Unmodified	_QKKTQETSK_					0	0	0			REV__SENP7|p.K545Nfs*11|1|0.49|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant;REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__SENP7|p.K545Nfs*11|1|0.49|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2992553710938	2	539.29857	1076.58259	2.0745	0.0011188	-1.1591	-0.00062513	0.91534	0.00049364	539.2981995950119	27.647	0.87103	27.647	27.238	28.109	0					51	17	5	0	0	0	0.10506	1	9789	9789		52.937	0	1	1171600	+		31011	21502;14980	21345	21417	31405	31405					0.04735922638019474
QKLASKFQK	9	Unmodified	_QKLASKFQK_					0	0	0			REV__nc|ENSG00000165533|Q8TAM2-3|TTC8	REV__nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3248901367188	2	539.324391	1076.63423	1.4266	0.00076937	-0.51371	-0.00027705	0.91284	0.00049232	539.32413485147	18.318	0.572	18.318	18.105	18.677	0					24	11	3	0	0	0	0.12834	1	5588	5588		66.429	7.6473	1	1970000	+		31012	16050	21346	21418	31406	31406					0.09897711122607689
QKLCTILDPK	10	Unmodified	_QKLCTILDPK_					0	0	0			REV__ENSG00000196350|ENST00000601693|ZNF729	REV__ENSG00000196350|ENST00000601693|ZNF729	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.89117431640625	3	386.889886	1157.64783	0.12947	5.0089E-05	2.6287	0.001017	2.7582	0.0010671	386.8909518626847	10.856	0.05831	10.856	10.805	10.864	0					4	2	2	0	0	0	0.30252	1	2106	2106		66.962	0.04172	1	395100	+		31013	17243	21347	21419	31407	31407					0.07531200839525809
QKLHELIA	8	Unmodified	_QKLHELIA_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.28387451171875	2	476.284734	950.554916	0.77791	0.00037051	-3.4609	-0.0016484	-2.683	-0.0012779	476.2831005045953	11.546	0.10285	11.546	11.482	11.585	0					7	4	2	0	0	0	0.59411	1	2253	2253		50.025	0	1	193070	+		31014	17015	21348	21420	31408	31408					0.07766064168470166
QKLKELSW	8	Unmodified	_QKLKELSW_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2974853515625	2	516.297842	1030.58113	0.8741	0.00045129	-1.1207	-0.0005786	-0.24657	-0.0001273	516.2971232597813	34.594	0.17329	34.594	34.54	34.713	0					7	4	2	0	0	0	0.58597	1	13358	13358		51.335	5.3632	1	88107	+		31015	13047	21349	21421	31409	31409					0.06706333339934645
QKLKETQSKY	10	Unmodified	_QKLKETQSKY_					0	0	0		RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant;nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant	RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	626.8485107421875	2	626.848427	1251.6823	-0.020904	-1.3104E-05	-0.050184	-3.1458E-05	-0.071089	-4.4562E-05	626.848458328107	27.195	0.21544	27.195	27.089	27.304	0					10	4	3	0	0	0	0.54861	1	9836	9836		40.058	0.80534	1	666680			31016	11998	21350	21422	31410	31410					0.06652740252002332
QKLKYLKQ	8	Unmodified	_QKLKYLKQ_					0	0	0			REV__ENSG00000105298|ENST00000429344|CACTIN	REV__ENSG00000105298|ENST00000429344|CACTIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8294677734375	2	524.829309	1047.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.636	1	23.636	23.136	24.136	0								0	0	0	1.7419	1	6867	6867		71.378	0	1		+		31017	13768	21351	21423	31411	31411					0.12214899127957324
QKLLFAARK	9	Unmodified	_QKLLFAARK_					0	0	0			REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.84326171875	2	537.842751	1073.67095	2.0703	0.0011135	-1.2923	-0.00069506	0.77802	0.00041845	537.8420617586158	22.933	0.29901	22.933	22.846	23.145	0					16	7	3	0	0	0	0.39215	1	7532	7532		42.396	5.237	1	466960	+		31018	14585	21352	21424	31412	31412					0.13706007739165216
QKLLFAARK	9	Unmodified	_QKLLFAARK_					0	0	0			REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8433227539062	2	537.842751	1073.67095	1.3435	0.0007226	-0.0066932	-3.5999E-06	1.3368	0.000719	537.8427533051808	22.87	0.31833	22.87	22.76	23.078	0					12	6	3	0	0	0	0.099922	1	7792	7792		79.451	18.479	1	253280	+		31019	14585	21352	21424	31413	31413					0.13706007739165216
QKLLFAARK	9	Unmodified	_QKLLFAARK_					0	0	0			REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8433227539062	2	537.842751	1073.67095	1.9944	0.0010727	-1.547	-0.00083206	0.44739	0.00024063	537.8420078382028	22.83	0.26873	22.83	22.722	22.99	0					9	5	2	0	0	0	0.18605	1	7666	7666		63.306	8.53	1	566070	+		31020	14585	21352	21424	31414	31414					0.13706007739165216
QKLLKMNGPE	10	Unmodified	_QKLLKMNGPE_					0	0	0		ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1	ENSG00000198431|ENST00000525566|TXNRD1	ENSG00000198431|ENST00000525566|TXNRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.3199462890625	2	579.320991	1156.62743	-0.068649	-3.977E-05	-1.6604	-0.00096192	-1.7291	-0.0010017	579.3200433605374	24.058	0.13567	24.058	23.991	24.126	0					8	4	2	0	0	0	0.44292	1	7322	7322		31.53	14.165	1	127250			31021	7560	21353	21425	31415	31415					0.05538030179741327
QKLLLEQHQS	10	Unmodified	_QKLLLEQHQS_					0	0	0			REV__ENSG00000280670|ENST00000629482|CCDC163	REV__ENSG00000280670|ENST00000629482|CCDC163	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.3396606445312	2	612.340769	1222.66699	0.42288	0.00025895	-2.6246	-0.0016071	-2.2017	-0.0013482	612.3390180031349	10.983	0.10336	10.983	10.96	11.064	0					7	4	2	0	0	0	0.56931	1	2151	2151		37.812	8.662	1	172440	+		31022	17849	21354	21426	31416	31416					0.06455873454797256
QKLQLVIQK	9	Unmodified	_QKLQLVIQK_					0	0	0			REV__CCBE1|p.T211I|1|0.3|ENSG00000183287|chr18:59454873-59454873|G/A|missense_variant	REV__CCBE1|p.T211I|1|0.3|ENSG00000183287|chr18:59454873-59454873|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.3570556640625	2	549.355691	1096.69683	1.7701	0.00097244	0.30302	0.00016647	2.0732	0.0011389	549.3561250898275	38.38	0.25999	38.38	38.317	38.577	0					17	8	3	0	0	0	0.063171	1	14572	14572		96.19	13.885	1	89143	+		31023	12348	21355	21427	31417	31417					0.1523485719076234
QKLQLVIQK	9	Unmodified	_QKLQLVIQK_					0	0	0			REV__CCBE1|p.T211I|1|0.3|ENSG00000183287|chr18:59454873-59454873|G/A|missense_variant	REV__CCBE1|p.T211I|1|0.3|ENSG00000183287|chr18:59454873-59454873|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.3564453125	2	549.355691	1096.69683	0.53884	0.00029602	0.81894	0.00044989	1.3578	0.00074591	549.3561548468233	38.396	0.41303	38.396	38.282	38.695	0					22	14	2	0	0	0	0.035062	1	15035	15035		111.65	5.2331	1	261780	+		31024	12348	21355	21427	31418	31418					0.1523485719076234
QKLQLVIQK	9	Unmodified	_QKLQLVIQK_					0	0	0			REV__CCBE1|p.T211I|1|0.3|ENSG00000183287|chr18:59454873-59454873|G/A|missense_variant	REV__CCBE1|p.T211I|1|0.3|ENSG00000183287|chr18:59454873-59454873|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.3560791015625	2	549.355691	1096.69683	0.53061	0.00029149	0.25649	0.0001409	0.78709	0.00043239	549.3559182510984	38.275	0.33986	38.275	38.17	38.51	0					18	7	3	0	0	0	0.063171	1	15023	15023		108.09	19.911	1	601290	+		31025	12348	21355	21427	31419	31419					0.1523485719076234
QKLTLTAP	8	Unmodified	_QKLTLTAP_					0	0	0			REV__ENSG00000083099|ENST00000523377|LYRM2	REV__ENSG00000083099|ENST00000523377|LYRM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.2658386230469	2	436.26601	870.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.727	1	30.727	30.227	31.227	0								0	0	0	1.7419	1	11516	11516		26.796	0	1		+		31026	13327	21356	21428	31420	31420					0.0770297290284816
QKLVSMRK	8	Unmodified	_QKLVSMRK_					0	0	0			REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2996520996094	2	495.299862	988.58517	-0.040085	-1.9854E-05	0.061764	3.0592E-05	0.021679	1.0737E-05	495.29988728678416	16.588	0.11562	16.588	16.531	16.647	0					4	2	2	0	0	0	0.48092	1	4783	4783		60.972	5.4677	1	106270	+		31027	21829	21357	21429	31421	31421					0.09042099562009298
QKLWKSYVK	9	Unmodified	_QKLWKSYVK_					0	0	0		ENST00000509608.1_1_5:31464267-31468068:-|nuORF;nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	ENST00000509608.1_1_5:31464267-31468068:-|nuORF;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.3458862304688	2	590.347866	1178.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.48	1	17.48	16.98	17.98	0								0	0	0	0.051298	1	5198	5198		79.713	0	1				31028	10225;2797	21358	21430	31422	31422					0.09898570673726681
QKLWKSYVK	9	Unmodified	_QKLWKSYVK_					0	0	0		ENST00000509608.1_1_5:31464267-31468068:-|nuORF;nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	ENST00000509608.1_1_5:31464267-31468068:-|nuORF;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.3458862304688	2	590.347866	1178.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.463	1	17.463	16.963	17.963	0								0	0	0	0.241	1	5042	5042		37.812	0	1				31029	10225;2797	21358	21430	31423	31423					0.09898570673726681
QKLYCEANL	9	Unmodified	_QKLYCEANL_					0	0	0			REV__ENST00000484546.1_1_9:123151516-123165527:-|nuORF	REV__ENST00000484546.1_1_9:123151516-123165527:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2705688476562	2	541.270967	1080.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.032	1	13.032	12.532	13.532	0								0	0	0	0.40021	1	2530	2530		10.866	0.6003	1		+		31030	19637	21359	21431	31424	31424					-0.00966207154078802
QKMPKTLRT	9	Unmodified	_QKMPKTLRT_					0	0	0		nc|ENSG00000288649|Q5JWF8|ACTL10	nc|ENSG00000288649|Q5JWF8|ACTL10	nc|ENSG00000288649|Q5JWF8|ACTL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.8253784179688	2	551.823701	1101.63285	4.5866	0.002531	-2.5865	-0.0014273	2.0001	0.0011037	551.8225831334902	22.997	0.10765	22.997	22.947	23.054	0					6	3	2	0	0	0	0.19605	1	6849	6849		62.107	0	1	74481			31031	11826	21360	21432	31425	31425					0.08609753762220862
QKNAVLNK	8	Unmodified	_QKNAVLNK_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7742614746094	2	457.774534	913.534515	-0.40322	-0.00018458	-0.19916	-9.1168E-05	-0.60237	-0.00027575	457.77443412200375	15.24	0.14602	15.24	15.161	15.307	0					8	4	3	0	0	0	0.27084	1	3286	3286		92.191	0	1	364550			31032	4923	21361	21433	31426	31426					0.07428893508654255
QKNQRTKK	8	Unmodified	_QKNQRTKK_					0	0	0		nc|ENSG00000100578|Q9BVV6-4|KIAA0586;KIAA0586|p.P1497Lfs*6|1|0.11|ENSG00000100578|chr14:58547816-58547816|C/-|frameshift_variant;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586;KIAA0586|p.S722Qfs*8|1|0.39|ENSG00000100578|chr14:58465980-58465980|T/-|frameshift_variant;KIAA0586|p.K791Rfs*14|1|0.33|ENSG00000100578|chr14:58467891-58467891|A/-|frameshift_variant;ENST00000538571.6_1_14:58909433-59003756:+|nuORF	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8095703125	2	515.809439	1029.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.778	1	12.778	12.278	13.278	0								0	0	0	1.7419	1	2804	2804		9.4706	0	1				31033	2044	21362	21434	31427	31427					0.09070772177278741
QKNTLKET	8	Unmodified	_QKNTLKET_					0	0	0			REV__ENSG00000126860|ENST00000462804|EVI2A	REV__ENSG00000126860|ENST00000462804|EVI2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.269287109375	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.558	1	11.558	11.058	12.058	0								0	0	0	1.7419	1	2396	2396		12.959	0	1		+		31034	14477	21363	21435	31428	31428					0.04216866063575253
QKNVKLSTE	9	Unmodified	_QKNVKLSTE_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7960815429688	2	523.795663	1045.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.935	1	20.935	20.435	21.435	0								0	0	0	0.17378	1	6863	6863		54.776	13.998	1				31035	2192	21364	21436	31429	31429					0.05580824126354855
QKPDRLDT	8	Unmodified	_QKPDRLDT_					0	0	0			REV__ENST00000428388.6_1_6:32121760-32122096:+|nuORF	REV__ENST00000428388.6_1_6:32121760-32122096:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7589416503906	2	486.759081	971.503609	-0.31318	-0.00015244	0.015259	7.4276E-06	-0.29792	-0.00014502	486.75921572847096	17.419	0.16853	17.419	17.331	17.499	0					11	4	3	0	0	0	0.65148	1	4939	4939		40.778	2.9666	1	578820	+		31036	19132	21365	21437	31430	31430					0.01671695403740614
QKPGDQWPM	9	Unmodified	_QKPGDQWPM_					0	0	0			REV__nc|ENSG00000117400|P40238-2|MPL	REV__nc|ENSG00000117400|P40238-2|MPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7548217773438	2	543.755484	1085.49641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.029	1	13.029	12.529	13.529	0								0	0	0	0.40021	1	2645	2645		10.866	0.6003	1		+		31037	14192	21366	21438	31431	31431					-0.04291360468300809
QKPHSNTRK	9	Unmodified	_QKPHSNTRK_					0	0	0		ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.304443359375	2	548.304521	1094.59449	1.1566	0.00063415	-1.4829	-0.00081311	-0.32637	-0.00017895	548.3040457634522	16.64	0.11827	16.64	16.555	16.673	0					7	3	3	0	0	0	0.24334	1	3983	3983		56.434	1.7114	1	109330			31038	1261	21367	21439	31432	31432					0.05097584171903691
QKPKRRRRRK	10	Unmodified	_QKPKRRRRRK_					0	0	0			REV__LPIN3|p.G368Afs*52|1|0.31|ENSG00000132793|chr20:41350389-41350389|G/-|frameshift_variant	REV__LPIN3|p.G368Afs*52|1|0.31|ENSG00000132793|chr20:41350389-41350389|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	704.9645385742188	2	704.963452	1407.91235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.683	1	42.683	42.183	43.183	0								0	0	0	0.4201	1	16742	16742		6.7355	0.42289	1		+		31039	14677	21368	21440	31433	31433					0.22471056218796548
QKPNACVSLK	10	Unmodified	_QKPNACVSLK_					0	0	0			REV__nc|ENSG00000115009|P78556-2|CCL20	REV__nc|ENSG00000115009|P78556-2|CCL20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2994995117188	2	544.300059	1086.58556	-0.20494	-0.00011155	-0.96716	-0.00052643	-1.1721	-0.00063798	544.2996475752716	17.104	0.065237	17.104	17.043	17.108	0					4	2	2	0	0	0	0.2978	1	4216	4216		67.494	5.3863	1	65730	+		31040	14094	21369	21441	31434	31434					0.045734744911896996
QKPNGLKK	8	Unmodified	_QKPNGLKK_					0	0	0			REV__PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant	REV__PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7853698730469	2	456.784902	911.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.059	1	11.059	10.559	11.559	0								0	0	0	1.7419	1	2180	2180		19.36	0	1		+		31041	13337	21370	21442	31435	31435					0.09593483888329501
QKPPPAAP	8	Unmodified	_QKPPPAAP_					0	0	0			REV__FMNL1|p.A81Rfs*23|1|0.23|ENSG00000184922|chr17:45232387-45232388|-/C|frameshift_variant	REV__FMNL1|p.A81Rfs*23|1|0.23|ENSG00000184922|chr17:45232387-45232388|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.2319030761719	2	403.231971	804.449388	0.95501	0.00038509	-0.8488	-0.00034226	0.10621	4.2829E-05	403.23153794002815	21.316	0.18683	21.316	21.175	21.362	0					10	4	3	0	0	0	0.6282	1	6769	6769		44.531	9.3304	1	279300	+		31042	16998	21371	21443	31436	31436					0.03934148042844754
QKPSKNKK	8	Unmodified	_QKPSKNKK_					0	0	0			REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.29534912109375	2	479.295633	956.576714	-0.22231	-0.00010655	-0.54007	-0.00025885	-0.76238	-0.0003654	479.2955181895354	22.502	0.14309	22.502	22.422	22.565	0					7	4	2	0	0	0	0.51384	1	6624	6624		58.782	0	1	256210	+		31043	21163	21372	21444	31437	31437					0.09668868917037798
QKPSQGMTAAD	11	Unmodified	_QKPSQGMTAAD_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;CRMP1|p.F275Lfs*28|1|0.3|ENSG00000072832|chr4:5839665-5839665|A/-|frameshift_variant	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.7703857421875	2	567.266413	1132.51827	0.12272	6.9613E-05	0.50796	0.00028815	0.63068	0.00035776	567.2668654269124	18.504	0.35394	18.504	18.332	18.686	0					34	12	5	0	0	0	0.69524	1	4791	4791		28.081	1.3886	1	2127200			31044	1503	21373	21445	31438	31438					-0.0426860051040876
QKPTDLLM	8	Unmodified	_QKPTDLLM_					0	0	0		ERCC1|p.A220T|1|0.09|ENSG00000012061|chr19:45414905-45414905|C/T|missense_variant	ERCC1|p.A220T|1|0.09|ENSG00000012061|chr19:45414905-45414905|C/T|missense_variant	ERCC1|p.A220T|1|0.09|ENSG00000012061|chr19:45414905-45414905|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.25701904296875	2	473.257328	944.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.367	1	46.367	45.867	46.867	0								0	0	0	1.7419	1	18555	18555		33.516	0	1				31045	11112	21374	21446	31439	31439					0.025633093055489553
QKQFDQDH	8	Unmodified	_QKQFDQDH_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55004982-55005627:+|nuORF;nc|ENSG00000100852|Q13017-3|ARHGAP5;nc|ENSG00000100852|Q13017-4|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2403564453125	2	523.238513	1044.46247	3.4144	0.0017866	0.27452	0.00014364	3.689	0.0019302	523.2386302526875	11.897	1.3173	11.897	11.778	13.095	0					96	35	5	0	0	0	0.65276	1	2573	2573		40.573	1.3198	1	34239000			31046	2069	21375	21447	31440	31440					-0.05798065635713101
QKQFPLTR	8	Unmodified	_QKQFPLTR_					0	0	0			REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2950134277344	2	509.295633	1016.57671	-0.51192	-0.00026072	-0.60408	-0.00030765	-1.116	-0.00056837	509.2951535429572	12.804	0.065113	12.804	12.758	12.823	0					5	3	2	0	0	0	0.65148	1	2567	2567		30.504	0	1	42635	+		31047	19733	21376	21448	31441	31441					0.06908868917025757
QKQQVALQQ	9	Unmodified	_QKQQVALQQ_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.801513671875	2	535.80128	1069.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.722	1	11.722	11.222	12.222	0								0	0	0	0.10121	1	2316	2316		71.296	13.066	1		+		31048	15042	21377	21449	31442	31442					0.05599646220525756
QKQQVEKM	8	Unmodified	_QKQQVEKM_					0	0	0		ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.77130126953125	2	509.771134	1017.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.632	1	22.632	22.132	23.132	0								0	0	0	1.7419	1	6692	6692		29.15	0	1				31049	1501	21378	21450	31443	31443					0.019652125657898978
QKQSPSLTNA	10	Unmodified	_QKQSPSLTNA_					0	0	0			REV__LILRA1|p.N448Kfs*34|1|0.3|ENSG00000104974|chr19:54600538-54600539|-/A|frameshift_variant	REV__LILRA1|p.N448Kfs*34|1|0.3|ENSG00000104974|chr19:54600538-54600539|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.27880859375	2	537.28292	1072.55129	-0.36441	-0.00019579	0.10568	5.6781E-05	-0.25872	-0.00013901	537.2830113419687	19.031	0.39411	19.031	18.827	19.221	0					28	12	4	0	0	0	0.38179	1	5036	5036		58.246	1.5252	1	1431300	+		31050	20840	21379	21451	31444	31444					0.017913496039454913
QKRKAKAS	8	Unmodified	_QKRKAKAS_					0	0	0		nc|ENSG00000145901|Q15025-3|TNIP1;nc|ENSG00000145901|Q15025-2|TNIP1;ENSG00000145901|ENST00000521591|TNIP1	nc|ENSG00000145901|Q15025-3|TNIP1	nc|ENSG00000145901|Q15025-3|TNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7877502441406	2	458.787976	915.561398	-0.059048	-2.7091E-05	-0.44755	-0.00020533	-0.5066	-0.00023242	458.78768820947954	52.707	0.28117	52.707	52.585	52.867	0					33	17	3	0	0	0	0.7914	1	15617	15617		14.664	0	1	141890			31051	4700	21380	21452	31445	31445					0.10024002119848774
QKRSMGLTL	9	Oxidation (M)	_QKRSM(Oxidation (M))GLTL_		QKRSM(1)GLTL		QKRSM(91)GLTL	0	0	1		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant;ENST00000525960.1_1_11:120316133-120317795:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2916870117188	2	525.292233	1048.56991	-1.2438	-0.00065334	-0.77339	-0.00040625	-2.0172	-0.0010596	525.2918498218128	14.891	0.1885	14.891	14.824	15.012	0					24	9	3	0	0	0	0.062676	1	3223	3223		90.777	11.326	1	878590			31052	7402	21381	21453	31446	31446		299			0.04757187974155386
QKRSSGLKN	9	Unmodified	_QKRSSGLKN_					0	0	0		ZNF615|p.T281Lfs*103|1|0.3|ENSG00000197619|chr19:51994235-51994235|T/-|frameshift_variant;nc|ENSG00000197619|Q8N8J6|ZNF615;nc|ENSG00000197619|Q8N8J6-3|ZNF615;ENSG00000197619|ENST00000598071|ZNF615	ZNF615|p.T281Lfs*103|1|0.3|ENSG00000197619|chr19:51994235-51994235|T/-|frameshift_variant	ZNF615|p.T281Lfs*103|1|0.3|ENSG00000197619|chr19:51994235-51994235|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2956848144531	2	509.293622	1016.57269	3.0083	0.0015321	0.78437	0.00039947	3.7926	0.0019316	509.29397365383267	23.611	0.41201	23.611	23.451	23.863	0					19	8	3	0	0	0	0.35021	1	8016	8016		45.972	1.8554	1	1415600			31053	7481	21382	21454	31447	31447					0.06506779423341413
QKRVPCAY	8	Unmodified	_QKRVPCAY_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2574462890625	2	482.755287	963.496021	0.88957	0.00042945	3.7294	0.0018004	4.6189	0.0022298	482.7580677306188	28.059	0.66415	28.059	27.695	28.359	0					20	13	2	0	0	0	0.6282	1	10154	10154		44.531	0.41427	1	1050100			31054	1951	21383	21455	31448	31448					0.01281264602482679
QKSKSKQH	8	Unmodified	_QKSKSKQH_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;nc|ENSG00000083642|Q9NTI5-5|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7748107910156	2	485.775065	969.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.623	1	13.623	13.123	14.123	0								0	0	0	1.7419	1	3141	3141		53.351	0	1				31055	1698	21384	21456	31449	31449					0.04959107877573388
QKSLDSLKK	9	Unmodified	_QKSLDSLKK_					0	0	0		tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.8141479492188	2	523.813856	1045.61316	-1.276	-0.00066837	2.3013	0.0012055	1.0254	0.0005371	523.8150827740665	19.394	0.14338	19.394	19.306	19.45	0					5	3	2	0	0	0	0.037569	1	5246	5246		101.6	2.9713	1	282440			31056	22792	21385	21457	31450	31450					0.09217701023112568
QKSNMKLHM	9	Oxidation (M)	_QKSNM(Oxidation (M))KLHM_		QKSNM(1)KLHM		QKSNM(53)KLHM(-53)	0	0	1		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ENST00000543926.6_1_18:74647944-74680292:+|nuORF	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.7857055664062	2	566.783718	1131.55288	-1.1967	-0.00067825	2.6197	0.0014848	1.4231	0.00080657	567.2865695395666	13.399	0.088605	13.399	13.329	13.417	0					6	5	2	0	0	0	0.20551	1	2686	2686		60.972	6.1956	2	44134			31057	3680	21386	21458	31451	31451		155			-0.007630559033032114
QKSSEMKVE	9	Unmodified	_QKSSEMKVE_					0	0	0			REV__ENSG00000103888|ENST00000394685|CEMIP	REV__ENSG00000103888|ENST00000394685|CEMIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7852783203125	2	533.265881	1064.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.819	1	12.819	12.319	13.319	0								0	0	0	0.37233	1	2978	2978		19.104	2.6304	1		+		31058	13701	21387	21459	31452	31452					-0.01246814879300473
QKSSIRIQK	9	Unmodified	_QKSSIRIQK_					0	0	0			REV__LTV1|p.T382Qfs*23|1|0.08|ENSG00000135521|chr6:143863110-143863110|A/-|frameshift_variant	REV__LTV1|p.T382Qfs*23|1|0.08|ENSG00000135521|chr6:143863110-143863110|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.333251953125	2	544.332747	1086.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.304	1	14.304	13.804	14.804	0								0	0	0	0.22284	1	3005	3005		47.657	1.6851	1		+		31059	20857	21388	21460	31453	31453					0.11108212008548435
QKSYSIGAK	9	Unmodified	_QKSYSIGAK_					0	0	0			REV__ENST00000511685.5_2_4:183522223-183549997:+|nuORF	REV__ENST00000511685.5_2_4:183522223-183549997:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2713928222656	2	491.271824	980.529095	0.58385	0.00028683	-2.5294	-0.0012426	-1.9455	-0.00095579	491.2711482159969	16.761	0.30054	16.761	16.712	17.013	0					12	6	3	0	0	0	0.17854	1	4870	4870		64.207	10.856	1	1050100	+		31060	19881	21389	21461	31454	31454					0.038051699261814065
QKTDTKGKK	9	Unmodified	_QKTDTKGKK_					0	0	0		ENSG00000249156|ENST00000503184|TAF11L12;ENSG00000283740|ENST00000510838|TAF11L11	ENSG00000249156|ENST00000503184|TAF11L12	ENSG00000249156|ENST00000503184|TAF11L12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.3040161132812	2	517.303655	1032.59276	0.025505	1.3194E-05	0.95295	0.00049296	0.97845	0.00050616	517.3041297953441	15.314	0.081715	15.314	15.272	15.354	0					4	2	2	0	0	0	0.33044	1	3475	3475		47.657	8.9037	1	141510			31061	7980	21390	21462	31455	31455					0.07776530363298662
QKTEEVLKK	9	Unmodified	_QKTEEVLKK_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.8296508789062	2	551.826963	1101.63937	3.6898	0.0020361	1.1007	0.00060739	4.7905	0.0026435	551.827720927455	16.174	0.41767	16.174	16.114	16.532	0					13	8	3	0	0	0	0.37197	1	4434	4434		44.117	8.4985	1	928240	+		31062	17341	21391	21463	31456	31456					0.09261970194552305
QKTFVQKL	8	Unmodified	_QKTFVQKL_					0	0	0			REV__nc|ENSG00000176659|Q8N268-2|LINC02910	REV__nc|ENSG00000176659|Q8N268-2|LINC02910	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2984619140625	2	496.300384	990.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.714	1	12.714	12.214	13.214	0								0	0	0	1.7419	1	2773	2773		47.916	0	1		+		31063	21130	21392	21464	31457	31457					0.0905463720255284
QKTKLLQQ	8	Unmodified	_QKTKLLQQ_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.80609130859375	2	493.803291	985.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.307	1	43.307	42.807	43.807	0								0	0	0	1.7419	1	16952	16952		49.442	1.7842	1				31064	7189	21393	21465	31458	31458					0.09865735714231505
QKTKLLVSQ	9	Unmodified	_QKTKLLVSQ_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8245239257812	2	522.824224	1043.63389	0.45048	0.00023552	-0.44819	-0.00023433	0.002288	1.1962E-06	522.8240521578062	27.264	0.16939	27.264	27.204	27.373	0					8	3	3	0	0	0	0.035062	1	9749	9749		104.06	10.861	1	373360	+		31065	12755	21394	21466	31459	31459					0.1138229140274234
QKTPRDVVM	9	Unmodified	_QKTPRDVVM_					0	0	0		EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF	EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant	EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.29248046875	2	537.292233	1072.56991	1.0306	0.00055374	-0.4519	-0.0002428	0.57872	0.00031094	537.2920699211445	18.156	0.76822	18.156	17.823	18.591	0					53	19	5	0	0	0	0.56843	1	4778	4778		24.519	0	1	4272900			31066	1846	21395	21467	31460	31460					0.03653187974168759
QKTRRNQF	8	Unmodified	_QKTRRNQF_					0	0	0			REV__ENSG00000116035|ENST00000234392|VAX2	REV__ENSG00000116035|ENST00000234392|VAX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.29931640625	2	539.299239	1076.58392	1.0165	0.0005482	-1.1429	-0.00061637	-0.1264	-6.817E-05	539.2992493288176	27.33	0.46511	27.33	27.164	27.629	0					27	11	3	0	0	0	0.61938	1	8903	8903		26.796	1.3459	1	190910	+		31067	14133	21396	21468	31461	31461					0.0486960151747553
QKVAIERDG	9	Unmodified	_QKVAIERDG_					0	0	0			REV__ENST00000495993.1_1_3:53905208-53907064:-|nuORF	REV__ENST00000495993.1_1_3:53905208-53907064:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.28033447265625	2	508.28018	1014.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.233	1	17.233	16.733	17.733	0								0	0	0	0.38123	1	4072	4072		16.473	0	1		+		31068	19768	21397	21469	31462	31462					0.039116708121468946
QKVDSNAY	8	Unmodified	_QKVDSNAY_					0	0	0			REV__ENSG00000204711|ENST00000377197|CFAP95	REV__ENSG00000204711|ENST00000377197|CFAP95	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2298583984375	2	462.724707	923.43486	4.1584	0.0019242	-0.85406	-0.0003952	3.3043	0.001529	462.7228842731527	28.183	0.37338	28.183	28.022	28.396	0					35	13	4	0	0	0	0.69548	1	9082	9082		34.173	3.8548	1	210050	+		31069	17498	21398	21470	31463	31463					-0.029919688959580526
QKVKRVIGV	9	Unmodified	_QKVKRVIGV_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.89764404296875	3	342.897593	1025.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.231	1	18.231	17.731	18.731	0								0	0	0	0.40413	1	4718	4718		9.7057	0	1				31070	10036	21399	21471	31464	31464					0.15914007739183944
QKVLGKVK	8	Unmodified	_QKVLGKVK_					0	0	0			REV__POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant	REV__POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.3054504394531	2	450.30547	898.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.109	1	14.109	13.609	14.609	0								0	0	0	1.7419	1	3588	3588		26.796	1.3459	1		+		31071	12917	21400	21472	31465	31465					0.1430324492780528
QKVLLSEGGSL	11	Unmodified	_QKVLLSEGGSL_					0	0	0			REV__nc|ENSG00000090372|Q9NRL3-2|STRN4	REV__nc|ENSG00000090372|Q9NRL3-2|STRN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.8248291015625	2	565.824421	1129.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.453	1	26.453	25.953	26.953	0								0	0	0	0.38772	1	8519	8519		23.523	0	1		+		31072	13425	21401	21473	31466	31466					0.0746566633195016
QKVQELQQ	8	Unmodified	_QKVQELQQ_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.776123046875	2	500.774731	999.534909	-0.1371	-6.8655E-05	0.84604	0.00042367	0.70894	0.00035502	500.7751028924126	15.772	0.41922	15.772	15.56	15.979	0					24	10	3	0	0	0	0.3049	1	4113	4113		82.241	0	1	2243400			31073	2348	21402	21474	31467	31467					0.03512268437862076
QKVREEGK	8	Unmodified	_QKVREEGK_					0	0	0			REV__FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant	REV__FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2749938964844	2	487.274898	972.535243	0.4405	0.00021464	-0.0077613	-3.7819E-06	0.43274	0.00021086	487.274812001505	16.375	0.1217	16.375	16.309	16.43	0					5	3	2	0	0	0	0.49216	1	3871	3871		60.972	4.2509	1	68304	+		31074	17292	21403	21475	31468	31468					0.047876881577167296
QKVSTGRQVG	10	Unmodified	_QKVSTGRQVG_					0	0	0			REV__ENST00000372677.7_1_X:102564842-102565956:-|nuORF	REV__ENST00000372677.7_1_X:102564842-102565956:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.29931640625	2	530.298904	1058.58326	0.72913	0.00038665	0.64851	0.0003439	1.3776	0.00073056	530.2993165315096	20.688	0.16784	20.688	20.591	20.759	0					5	3	2	0	0	0	0.6796	1	6630	6630		24.519	4.5224	1	137810	+		31075	18672	21404	21476	31469	31469					0.05630762077771578
QKWTPEKL	8	Unmodified	_QKWTPEKL_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.288818359375	2	515.290017	1028.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.864	1	18.864	18.364	19.364	0								0	0	0	1.7419	1	5728	5728		74.255	4.6274	1		+		31076	13679	21405	21477	31470	31470					0.05234046822897653
QKYLEYKK	8	Unmodified	_QKYLEYKK_					0	0	0		nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENST00000490581.6_1_X:51805127-51807590:-|nuORF	nc|ENSG00000187243|Q96JG8-2|MAGED4	nc|ENSG00000187243|Q96JG8-2|MAGED4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.3086547851562	2	550.310949	1098.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.131	1	14.131	13.631	14.631	0								0	0	0	1.7419	1	3007	3007		30.504	1.3336	1				31077	5090	21406	21478	31471	31471					0.06198602511403806
QKYLLVGQ	8	Unmodified	_QKYLLVGQ_					0	0	0			REV__GGA2|p.T304A|1|0.28|ENSG00000103365|chr16:23480741-23480741|T/C|missense_variant	REV__GGA2|p.T304A|1|0.28|ENSG00000103365|chr16:23480741-23480741|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7789306640625	2	474.779285	947.544017	-0.60311	-0.00028634	-0.24693	-0.00011724	-0.85004	-0.00040358	474.7792348004849	37.861	0.34539	37.861	37.754	38.099	0					16	7	3	0	0	0	0.52345	1	14828	14828		57.811	1.0902	1	473530	+		31078	13677	21407	21479	31472	31472					0.06814661794192034
QKYNLLQQ	8	Unmodified	_QKYNLLQQ_					0	0	0			REV__SEMG2|p.E320Dfs*17|1|0.04|ENSG00000124157|chr20:45222591-45222592|-/CGGGTAT|frameshift_variant	REV__SEMG2|p.E320Dfs*17|1|0.04|ENSG00000124157|chr20:45222591-45222592|-/CGGGTAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.786865234375	2	517.785099	1033.55564	3.3338	0.0017262	-0.030742	-1.5918E-05	3.3031	0.0017103	517.7850508373037	13.696	0.16246	13.696	13.638	13.8	0					8	3	3	0	0	0	0.35045	1	3251	3251		76.847	2.5916	1	667590	+		31079	14379	21408	21480	31473	31473					0.04020858817534645
QKYRPIER	8	Unmodified	_QKYRPIER_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3096923828125	2	545.311815	1088.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.401	1	12.401	11.901	12.901	0								0	0	0	1.7419	1	2628	2628		18.324	11.589	1		+		31080	17425	21409	21481	31474	31474					0.06831656320036927
QKYSLQLK	8	Unmodified	_QKYSLQLK_					0	0	0		AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant;ENSG00000134698|ENST00000373210|AGO4	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2978210449219	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.186	1	22.186	21.686	22.686	0								0	0	0	1.7419	1	6234	6234		56.721	0	1				31081	95	21410	21482	31475	31475					0.07810333339944009
QLACLQGALP	10	Unmodified	_QLACLQGALP_					0	0	0			REV__ENST00000330374.6_1_X:150574182-150574368:+|nuORF	REV__ENST00000330374.6_1_X:150574182-150574368:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.27569580078125	2	507.276052	1012.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.235	1	19.235	18.735	19.735	0								0	0	0	0.40862	1	5171	5171		27.882	2.4321	1		+		31082	18377	21411	21483	31476	31476					0.03178400571152906
QLAECKKTPG	10	Unmodified	_QLAECKKTPG_					0	0	0		RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant	RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant	RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7832641601562	2	537.784241	1073.55393	0.77852	0.00041868	-1.0564	-0.0005681	-0.27785	-0.00014942	537.7831000616372	13.014	0.088949	13.014	12.96	13.049	0					5	3	2	0	0	0	0.65051	1	2529	2529		28.081	0	1	90490			31083	11998	21412	21484	31477	31477					0.020094817372410034
QLAELLFAL	9	Unmodified	_QLAELLFAL_					0	0	0		nc|ENSG00000135637|Q17RM4-3|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;ENSG00000135637|ENST00000393965|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.8692932128906	3	339.870821	1016.59063	-0.70963	-0.00024118	-3.1512	-0.001071	-3.8609	-0.0013122	339.8695864137268	14.293	0.081929	14.293	14.252	14.333	0					4	2	2	0	0	0	0.22377	1	3082	3082		58.782	19.529	1	126230			31084	4010	21413	21485	31478	31478					0.08300101625468415
QLAEVCGGV	9	Unmodified	_QLAEVCGGV_					0	0	0		tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1	tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1	tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.21795654296875	2	438.218203	874.421853	-0.57423	-0.00025164	0.042996	1.8842E-05	-0.53123	-0.0002328	438.21824632972124	23.083	0.46378	23.083	22.889	23.352	0					20	9	3	0	0	0	0.35045	1	7770	7770		45.952	5.1738	1	197250			31085	23042	21414	21486	31479	31479					-0.020381232796808035
QLALPDQQK	9	Unmodified	_QLALPDQQK_					0	0	0		ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.789306640625	2	520.790381	1039.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.755	1	12.755	12.255	13.255	0								0	0	0	0.21054	1	2793	2793		49.442	1.7842	1				31086	9930	21415	21487	31480	31480					0.048008414719333814
QLALPLQLR	9	Unmodified	_QLALPLQLR_					0	0	0		ENST00000437322.2_1_X:49642981-49643347:-|nuORF	ENST00000437322.2_1_X:49642981-49643347:-|nuORF	ENST00000437322.2_1_X:49642981-49643347:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.22528076171875	3	351.225598	1050.65496	-0.83176	-0.00029213	0.49985	0.00017556	-0.3319	-0.00011657	351.22580598274044	17.795	0.11357	17.795	17.729	17.843	0					6	3	2	0	0	0	0.28897	1	4540	4540		51.193	1.1592	1	62656			31087	9539	21416	21488	31481	31481					0.13166301502269562
QLAPLRSQ	8	Unmodified	_QLAPLRSQ_					0	0	0			REV__nc|ENSG00000130830|Q00013-2|MPP1	REV__nc|ENSG00000130830|Q00013-2|MPP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.7666015625	2	456.766709	911.518865	-1.0511	-0.00048012	0.39492	0.00018039	-0.6562	-0.00029973	456.7669278850124	18.071	0.47285	18.071	17.792	18.265	0					34	14	4	0	0	0	0.41	1	4631	4631		69.628	4.1622	1	1005500	+		31088	14602	21417	21489	31482	31482					0.05956606991617264
QLARREALL	9	Unmodified	_QLARREALL_					0	0	0		ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.2207336425781	3	357.220735	1068.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.887	1	22.887	22.387	23.387	0								0	0	0	0.19749	1	7500	7500		51.335	0	1				31089	5409	21418	21490	31483	31483					0.10880229354143012
QLASFTKVT	9	Unmodified	_QLASFTKVT_					0	0	0		nc|ENSG00000064692|Q9Y6H5-4|SNCAIP;ENSG00000064692|ENST00000261368|SNCAIP;nc|ENSG00000064692|Q9Y6H5-3|SNCAIP;ENST00000510003.5_1_5:121726829-121776497:+|nuORF;nc|ENSG00000064692|Q9Y6H5-6|SNCAIP	nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7818908691406	2	497.782025	993.549496	-0.025395	-1.2641E-05	0.21786	0.00010845	0.19247	9.5806E-05	497.7820999206031	29.028	0.25166	29.028	28.927	29.179	0					11	5	3	0	0	0	0.25716	1	10713	10713		54.776	1.6874	1	386320			31090	1353	21419	21491	31484	31484					0.052463405860066814
QLCGKTDPI	9	Unmodified	_QLCGKTDPI_					0	0	0			REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant	REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7533264160156	2	487.75241	973.490267	0.73624	0.0003591	-0.37642	-0.0001836	0.35982	0.0001755	487.7523249669707	42.733	0.1189	42.733	42.647	42.766	0					11	5	3	0	0	0	0.18416	1	16159	16159		63.534	0	1	285930	+		31091	16238	21420	21492	31485	31485					0.0024612130016521405
QLCGLPERPD	10	Unmodified	_QLCGLPERPD_					0	0	0			REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.52313232421875	3	376.521974	1126.54409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.816	1	16.816	16.316	17.316	0								0	0	0	0.4201	1	4064	4064		21.686	2.5822	1		+		31092	15574	21421	21493	31486	31486					-0.01411706268117996
QLCLDRLQL	9	Unmodified	_QLCLDRLQL_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.3081665039062	2	551.307884	1100.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.371	1	29.371	28.871	29.871	0								0	0	0	0.1633	1	10868	10868		56.721	6.6965	1				31093	2888	21422	21494	31487	31487					0.05493761008256115
QLCPLLLT	8	Unmodified	_QLCPLLLT_					0	0	0		CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant;CDK12|p.P536Hfs*74|1|0.37|ENSG00000167258|chr17:39471435-39471435|C/-|frameshift_variant;CDK12|p.P526Lfs*84|1|0.16|ENSG00000167258|chr17:39471406-39471406|C/-|frameshift_variant	CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant	CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7664794921875	2	450.764789	899.515025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.01	1	18.01	17.51	18.51	0								0	0	0	1.7419	1	5452	5452		25.45	4.9683	1				31094	458	21423	21495	31488	31488					0.06124801173530159
QLDAANCLGI	10	Unmodified	_QLDAANCLGI_					0	0	0		ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.25390625	2	509.255317	1016.49608	-0.50734	-0.00025837	-2.8886	-0.001471	-3.3959	-0.0017294	509.253731369004	27.288	0.13862	27.288	27.223	27.362	0					17	5	4	0	0	0	0.34667	1	8665	8665		62.107	0	1	263740			31095	6092	21424	21496	31489	31489					-0.011507801881862179
QLDHLLDP	8	Unmodified	_QLDHLLDP_					0	0	0		ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.75103759765625	2	475.750724	949.486896	-0.4053	-0.00019282	-0.027809	-1.323E-05	-0.43311	-0.00020605	475.75089717424015	34.369	0.20874	34.369	34.284	34.493	0					9	5	3	0	0	0	0.58597	1	12786	12786		51.335	3.3759	1	175610			31096	7926	21425	21497	31490	31490					0.010131945178045498
QLDLAQSL	8	Unmodified	_QLDLAQSL_					0	0	0		ENST00000319136.8_1_22:36649172-36649925:+|nuORF;ENST00000454728.5_1_22:36630327-36635600:-|nuORF;ENST00000358502.9_1_22:36629284-36635600:-|nuORF;ENST00000484830.1_1_22:36633328-36635600:-|nuORF;ENST00000426053.5_1_22:36649172-36653412:+|nuORF;ENST00000473549.1_1_22:36633328-36635709:-|nuORF	ENST00000319136.8_1_22:36649172-36649925:+|nuORF	ENST00000319136.8_1_22:36649172-36649925:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2451171875	2	444.245275	886.475997	0.5878	0.00026113	0.27635	0.00012277	0.86415	0.00038389	444.24532835301284	44.876	0.11871	44.876	44.792	44.911	0					10	7	2	0	0	0	0.6088	1	16764	16764		47.657	1.6851	1	61677			31097	8607	21426	21498	31491	31491					0.028217921435384596
QLDLPVFTLA	10	Unmodified	_QLDLPVFTLA_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.816650390625	2	558.818607	1115.62266	-0.13209	-7.3813E-05	-4.4852	-0.0025064	-4.6173	-0.0025802	558.8171196422945	28.357	0.30656	28.357	28.258	28.565	0					9	6	2	0	0	0	0.55603	1	10392	10392		39.253	0	1	123830	+		31098	15420	21427	21499	31492	31492					0.06947469308624932
QLDNKDIQ	8	Unmodified	_QLDNKDIQ_					0	0	0		ENST00000509743.6_1_5:80769553-80770371:-|nuORF	ENST00000509743.6_1_5:80769553-80770371:-|nuORF	ENST00000509743.6_1_5:80769553-80770371:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2506408691406	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.673	1	17.673	17.173	18.173	0								0	0	0	1.7419	1	5028	5028		74.255	0	1				31099	10226	21428	21500	31493	31493					0.0002798916684696451
QLEDLPIGF	9	Unmodified	_QLEDLPIGF_					0	0	0			REV__FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant	REV__FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2741088867188	2	516.274032	1030.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.137	1	53.137	52.637	53.637	0								0	0	0	0.28164	1	19476	19476		38.806	3.1879	1		+		31100	12966	21429	21501	31494	31494					0.019466343491103544
QLEGRLAL	8	Unmodified	_QLEGRLAL_					0	0	0		SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant;SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant;SPATA31A1|p.T1192Nfs*14|1|0.28|ENSG00000204849|chr9:39361333-39361334|-/A|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6;ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2687683105469	2	450.269084	898.523616	-0.29359	-0.00013219	-0.25062	-0.00011285	-0.54421	-0.00024504	450.26894874977165	39.624	0.3252	39.624	39.5	39.826	0					28	11	3	0	0	0	0.54629	1	15572	15572		55.504	2.1528	1	630160			31101	7104	21430	21502	31495	31495					0.07029491134358068
QLEHLLGQN	9	Unmodified	_QLEHLLGQN_					0	0	0			REV__ENSG00000116996|ENST00000366570|ZP4	REV__ENSG00000116996|ENST00000366570|ZP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2794189453125	2	526.28018	1050.54581	0.0997	5.247E-05	-0.097991	-5.1571E-05	0.001709	8.9943E-07	526.28010135157	18.861	0.60891	18.861	18.833	19.441	0					25	15	2	0	0	0	0.54267	1	5624	5624		27.882	0	1	1171700	+		31102	14174	21431	21503	31496	31496					0.022556708121555857
QLEIWHRNRMD	11	Unmodified	_QLEIWHRNRMD_					0	0	0		APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	749.3719482421875	2	749.372609	1496.73067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.407	1	38.407	37.907	38.907	0								0	0	0	0.45614	1	12954	12954		24.519	10.382	1				31103	185	21432	21504	31497	31497					0.00216910620224553
QLEIWHRNRMD	11	Unmodified	_QLEIWHRNRMD_					0	0	0		APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	749.0410766601562	2	749.372609	1496.73067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.429	1	38.429	37.929	38.929	0								0	0	0	0.43542	1	12961	12961		29.17	0	1				31104	185	21432	21504	31498	31498					0.00216910620224553
QLELDGLTQG	10	Unmodified	_QLELDGLTQG_					0	0	0			REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2780151367188	2	537.277303	1072.54005	2.1004	0.0011285	-0.20447	-0.00010985	1.896	0.0010187	537.2771392421904	19.268	0.36838	19.268	19.169	19.537	0					20	8	4	0	0	0	0.15878	1	5776	5776		85.161	0	1	2982400	+		31105	21585	21433	21505	31499	31499					0.006685275098107013
QLELDGLTQG	10	Unmodified	_QLELDGLTQG_					0	0	0			REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2783203125	2	537.277303	1072.54005	1.9735	0.0010603	-0.20526	-0.00011028	1.7682	0.00095001	537.2772477324407	19.186	0.41402	19.186	18.929	19.343	0					23	8	4	0	0	0	0.23612	1	5871	5871		75.043	2.8001	1	2536500	+		31106	21585	21433	21505	31500	31500					0.006685275098107013
QLELEREK	8	Unmodified	_QLELEREK_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1;REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2906494140625	2	522.787838	1043.56112	1.0865	0.00056798	1.6548	0.00086513	2.7413	0.0014331	522.7888400364213	30.972	0.28102	30.972	30.864	31.145	0					12	7	2	0	0	0	0.55403	1	10594	10594		54.722	1.3709	1	136540	+		31107	17352;21091	21434	21506	31501	31501					0.04108537609317864
QLENIQVL	8	Unmodified	_QLENIQVL_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7746276855469	2	478.7742	955.533846	-0.65981	-0.0003159	1.8966	0.00090807	1.2368	0.00059217	478.7750578578125	44.473	0.11402	44.473	44.436	44.55	0					5	4	2	0	0	0	0.6088	1	17822	17822		47.657	3.2801	1	35320			31108	3295	21435	21507	31502	31502					0.054300540689382615
QLEQQVEKL	9	Unmodified	_QLEQQVEKL_					0	0	0		ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8092651367188	2	557.808771	1113.60299	0.11918	6.648E-05	1.0139	0.00056557	1.1331	0.00063205	557.808804878739	30.449	0.12615	30.449	30.383	30.509	0					7	4	2	0	0	0	0.095583	1	10009	10009		80.455	10.827	1	91529			31109	3750	21436	21508	31503	31503					0.05073093297869491
QLEQTFNWL	9	Unmodified	_QLEQTFNWL_					0	0	0			REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.8053588867188	2	589.795663	1177.57677	-1.7664	-0.0010418	4.0066	0.0023631	2.2402	0.0013213	589.7978618768402	28.049	0.12257	28.049	27.981	28.103	0					6	3	2	0	0	0	0.054723	1	9238	9238		98.629	13.469	1	135490	+		31110	12442	21437	21509	31504	31504					-0.004911758736170668
QLERRKEE	8	Unmodified	_QLERRKEE_					0	0	0		TTLL7|p.T522Lfs*19|1|0.33|ENSG00000137941|chr1:83917627-83917627|T/-|frameshift_variant;nc|ENSG00000137941|Q6ZT98-2|TTLL7;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7;ENST00000488014.5_1_1:84386258-84403687:-|nuORF;ENST00000472688.5_1_1:84383321-84408355:-|nuORF	TTLL7|p.T522Lfs*19|1|0.33|ENSG00000137941|chr1:83917627-83917627|T/-|frameshift_variant	TTLL7|p.T522Lfs*19|1|0.33|ENSG00000137941|chr1:83917627-83917627|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2991943359375	2	544.296362	1086.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.73	1	40.73	40.23	41.23	0								0	0	0	1.7419	1	16051	16051		32.812	0	1				31111	4209	21438	21510	31505	31505					0.038344582151466966
QLETVKSQI	9	Unmodified	_QLETVKSQI_					0	0	0			REV__nc|ENSG00000052344|Q16651-2|PRSS8	REV__nc|ENSG00000052344|Q16651-2|PRSS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2982788085938	2	523.298039	1044.58152	0.76692	0.00040133	-0.23854	-0.00012483	0.52838	0.0002765	523.2978536724519	23.121	0.13156	23.121	23.051	23.183	0					7	4	2	0	0	0	0.12834	1	6639	6639		72.879	0.63601	1	116910	+		31112	13038	21439	21511	31506	31506					0.06101708269147821
QLETVKSQI	9	Unmodified	_QLETVKSQI_					0	0	0			REV__nc|ENSG00000052344|Q16651-2|PRSS8	REV__nc|ENSG00000052344|Q16651-2|PRSS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2984008789062	2	523.298039	1044.58152	0.0017167	8.9835E-07	1.3144	0.00068783	1.3161	0.00068872	523.2984721505095	23.387	0.16613	23.387	23.279	23.445	0					8	3	3	0	0	0	0.070005	1	8060	8060		88.177	15.934	1	306420	+		31113	13038	21439	21511	31507	31507					0.06101708269147821
QLEVKNAY	8	Unmodified	_QLEVKNAY_					0	0	0			REV__ENSG00000139648|ENST00000267119|KRT71	REV__ENSG00000139648|ENST00000267119|KRT71	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7583923339844	2	482.758549	963.502546	-0.27748	-0.00013395	-0.39274	-0.0001896	-0.67022	-0.00032355	482.7583690226237	33.682	0.29454	33.682	33.608	33.902	0					17	8	3	0	0	0	0.37378	1	11839	11839		73.975	2.0973	1	304380	+	+	31114	12611	21440	21512	31508	31508					0.01933481034848228
QLFADVILK	9	Unmodified	_QLFADVILK_					0	0	0			REV__ENSG00000151461|ENST00000357604|UPF2	REV__ENSG00000151461|ENST00000357604|UPF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.81787109375	2	523.815867	1045.61718	2.0534	0.0010756	2.0584	0.0010782	4.1118	0.0021538	523.8168917415214	35.402	0.20308	35.402	35.355	35.558	0					7	5	2	0	0	0	0.056004	1	13280	13280		93.143	7.9824	1	66070	+		31115	15475	21441	21513	31509	31509					0.09619790516785542
QLFGSPLFSR	10	Unmodified	_QLFGSPLFSR_					0	0	0			REV__ZNF133|p.C66Mfs*37|1|0.28|ENSG00000125846|chr20:18306363-18306364|-/A|frameshift_variant	REV__ZNF133|p.C66Mfs*37|1|0.28|ENSG00000125846|chr20:18306363-18306364|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.316162109375	2	576.314023	1150.61349	3.299	0.0019013	0.18447	0.00010631	3.4835	0.0020076	576.314190134245	26.829	0.46519	26.829	26.722	27.187	0					19	9	4	0	0	0	0.31894	1	9540	9540		65.157	11.806	1	1636500	+		31116	22313	21442	21514	31510	31510					0.04421120742927087
QLFHSQTLT	9	Unmodified	_QLFHSQTLT_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP	nc|ENSG00000112592|P20226-2|TBP	nc|ENSG00000112592|P20226-2|TBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7850952148438	2	537.782556	1073.55056	0.22344	0.00012016	3.0678	0.0016498	3.2912	0.0017699	537.7842437595108	23.776	0.6167	23.776	23.473	24.09	0					27	14	3	0	0	0	0.35021	1	7974	7974		45.972	0	1	434420			31117	2750	21443	21515	31511	31511					0.016725549548937124
QLFLQDIKL	9	Unmodified	_QLFLQDIKL_					0	0	0		ENST00000370801.7_1_1:78107323-78148330:-|nuORF	ENST00000370801.7_1_1:78107323-78148330:-|nuORF	ENST00000370801.7_1_1:78107323-78148330:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3367919921875	2	559.334424	1116.6543	3.4699	0.0019408	0.29961	0.00016758	3.7695	0.0021084	559.3345933629386	24.604	0.44978	24.604	24.496	24.946	0					22	9	4	0	0	0	0.010427	1	8518	8518		136.27	15.4	1	1034500			31118	8960	21444	21516	31512	31512					0.10063462062544204
QLFNLGLGRA	10	Unmodified	_QLFNLGLGRA_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000016285	REV__CON__ENSEMBL:ENSBTAP00000016285	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8121948242188	2	544.81419	1087.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.631	1	14.631	14.131	15.131	0								0	0	0	0.30913	1	3608	3608		49.442	7.0454	1		+	+	31119	12576	21445	21517	31513	31513					0.07352540462807156
QLFSTPALAAV	11	Unmodified	_QLFSTPALAAV_					0	0	0		ENST00000425802.1_1_1:52499214-52509659:+|nuORF	ENST00000425802.1_1_1:52499214-52509659:+|nuORF	ENST00000425802.1_1_1:52499214-52509659:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.3150634765625	2	559.316232	1116.61791	-0.45932	-0.00025691	-2.8882	-0.0016154	-3.3476	-0.0018723	559.3145450340814	33.239	0.10986	33.239	33.178	33.288	0					8	4	2	0	0	0	0.72154	1	11154	11154		25.574	1.0549	1	74873			31120	9438	21446	21518	31514	31514					0.06426585165831966
QLFYLPAKK	9	Unmodified	_QLFYLPAKK_					0	0	0		ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF	ENSG00000185787|ENST00000426013|MORF4L1	ENSG00000185787|ENST00000426013|MORF4L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.8901672363281	3	369.890215	1106.64882	0.86142	0.00031863	-0.81756	-0.00030241	0.04386	1.6223E-05	369.8899095142779	33.892	0.77112	33.892	33.767	34.538	0					37	16	4	0	0	0	0.44593	1	12920	12920		37.812	37.812	1	1808100			31121	7105	21447	21519	31515	31515					0.09975783270738248
QLGAWAPL	8	Unmodified	_QLGAWAPL_					0	0	0		ENST00000553958.5_1_14:23468311-23469174:-|nuORF;ENST00000397379.7_1_14:23468311-23470176:-|nuORF;ENST00000299088.10_1_14:23468311-23468461:-|nuORF	ENST00000553958.5_1_14:23468311-23469174:-|nuORF	ENST00000553958.5_1_14:23468311-23469174:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.2413330078125	2	428.239796	854.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.136	1	19.136	18.636	19.636	0								0	0	0	1.7419	1	4894	4894		29.842	6.8048	1				31122	8474	21448	21520	31516	31516					0.031984345598857544
QLGFLERE	8	Unmodified	_QLGFLERE_					0	0	0			REV__ENSG00000122477|ENST00000370137|LRRC39	REV__ENSG00000122477|ENST00000370137|LRRC39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.26348876953125	2	496.263999	990.513445	-0.76595	-0.00038011	-0.62631	-0.00031082	-1.3923	-0.00069093	496.26389681598573	30.325	0.24356	30.325	30.205	30.448	0					10	5	3	0	0	0	0.72381	1	11367	11367		30.504	1.3541	1	193550	+		31123	14333	21449	21521	31517	31517					0.017808834091511017
QLGSVLKNCDI	11	Carbamidomethyl (C)	_QLGSVLKNC(Carbamidomethyl (C))DI_	QLGSVLKNC(1)DI		QLGSVLKNC(42)DI		0	1	0		ENST00000474154.5_1_2:37458848-37468954:+|nuORF;ENSG00000003509|ENST00000002125|NDUFAF7;nc|ENSG00000003509|Q7L592-2|NDUFAF7	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.2202453613281	3	416.220184	1245.63872	1.0561	0.00043958	-0.7956	-0.00033114	0.26052	0.00010844	416.2198723633055	36.871	0.50746	36.871	36.761	37.268	0					24	10	3	0	0	0	0.52595	1	14376	14376		42.338	7.1861	1	955770			31124	936	21450	21522	31518	31518	30				0.02572807483215911
QLHARTRP	8	Unmodified	_QLHARTRP_					0	0	0		ENST00000451251.5_1_1:249152755-249153022:-|nuORF	ENST00000451251.5_1_1:249152755-249153022:-|nuORF	ENST00000451251.5_1_1:249152755-249153022:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7847900390625	2	489.783225	977.551896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.219	1	22.219	21.719	22.719	0								0	0	0	1.7419	1	6505	6505		45.952	1.8352	1				31125	9650	21451	21523	31519	31519					0.06222233834330382
QLHFSDALQ	9	Unmodified	_QLHFSDALQ_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.768310546875	2	529.766906	1057.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.137	1	41.137	40.637	41.637	0								0	0	0	0.12601	1	15642	15642		65.465	1.2581	1		+		31126	17352	21452	21524	31520	31520					-0.00720018079186957
QLHRHLLA	8	Unmodified	_QLHRHLLA_					0	0	0		ENST00000479866.5_1_12:48143124-48152369:-|nuORF;ENST00000482843.5_1_12:48142600-48152369:-|nuORF;nc|ENSG00000079337|O95398-2|RAPGEF3;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3	ENST00000479866.5_1_12:48143124-48152369:-|nuORF	ENST00000479866.5_1_12:48143124-48152369:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.86602783203125	3	329.866404	986.577383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.397	1	26.397	25.897	26.897	0								0	0	0	1.7419	1	8017	8017		17.365	0	1				31127	1619	21453	21525	31521	31521					0.08355708356737068
QLHRLREQL	9	Unmodified	_QLHRLREQL_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.8473510742188	2	596.849096	1191.68364	-1.8328	-0.0010939	-1.4973	-0.00089369	-3.3301	-0.0019876	596.8482254356503	32.577	0.41948	32.577	32.469	32.889	0					28	12	4	0	0	0	0.40353	1	11315	11315		34.173	0	1	474770	+		31128	12922	21454	21526	31522	31522					0.09546419131402217
QLIRSWVRYRR	11	Unmodified	_QLIRSWVRYRR_					0	0	0			REV__nc|ENSG00000171045|Q96NA8-2|TSNARE1	REV__nc|ENSG00000171045|Q96NA8-2|TSNARE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.634033203125	3	511.635542	1531.8848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.058	1	50.058	49.558	50.558	0								0	0	0	0.45674	1	18064	18064		5.6988	2.0797	1		+		31129	16394	21455	21527	31523	31523					0.14013108167910104
QLISATEKT	9	Unmodified	_QLISATEKT_					0	0	0		tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1	tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1	tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7771301269531	2	495.776939	989.539325	-2.4106	-0.0011951	3.1515	0.0015624	0.74084	0.00036729	495.7783875738898	17.437	0.13788	17.437	17.363	17.501	0					7	4	2	0	0	0	0.098791	1	4366	4366		79.713	16.179	1	152250			31130	22896	21456	21528	31524	31524					0.04413732860757591
QLISHLAL	8	Unmodified	_QLISHLAL_					0	0	0			REV__ENST00000398019.6_2_18:61442942-61449706:+|nuORF	REV__ENST00000398019.6_2_18:61442942-61449706:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7737121582031	2	447.774003	893.533452	0.62205	0.00027854	-0.69763	-0.00031238	-0.075582	-3.3843E-05	447.77373032792366	38.038	0.24301	38.038	37.931	38.174	0					17	8	3	0	0	0	0.51384	1	14902	14902		58.782	3.2778	1	214090	+		31131	18920	21457	21529	31525	31525					0.08242679139755182
QLIYRIQQ	8	Unmodified	_QLIYRIQQ_					0	0	0			REV__ENSG00000124429|ENST00000262753|POF1B	REV__ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.3108520507812	2	531.308741	1060.60293	1.1787	0.00062627	2.7926	0.0014837	3.9713	0.00211	531.3102939241153	22.251	0.18801	22.251	22.157	22.345	0					10	4	3	0	0	0	0.34985	1	6605	6605		76.847	0.072494	1	478470	+		31132	14397	21458	21530	31526	31526					0.07505138088527019
QLKCIMEVV	9	Unmodified	_QLKCIMEVV_					0	0	0		MAPK11|p.R234C|1|0.25|ENSG00000185386|chr22:50266288-50266288|G/A|missense_variant	MAPK11|p.R234C|1|0.25|ENSG00000185386|chr22:50266288-50266288|G/A|missense_variant	MAPK11|p.R234C|1|0.25|ENSG00000185386|chr22:50266288-50266288|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7871704101562	2	531.787938	1061.56132	0.12216	6.4962E-05	0.62377	0.00033171	0.74593	0.00039667	531.7882150714785	17.105	0.37354	17.105	16.929	17.302	0					26	9	4	0	0	0	0.24095	1	4787	4787		56.721	3.3696	1	2930300			31133	11347	21459	21531	31527	31527					0.033004980133227946
QLKGLEDTK	9	Unmodified	_QLKGLEDTK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.290283203125	2	516.290214	1030.56587	1.2434	0.00064195	-0.86725	-0.00044775	0.37615	0.0001942	516.2896693688324	26.672	0.40255	26.672	26.494	26.897	0					22	9	3	0	0	0	0.0792	1	9223	9223		84.916	9.8722	1	1461500			31134	1698;3238	21460	21532	31528	31528					0.05181421752058668
QLKMAVTN	8	Unmodified	_QLKMAVTN_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.74853515625	2	452.74967	903.484787	-2.6165	-0.0011846	0.6943	0.00031435	-1.9222	-0.00087028	452.7500515097014	28.197	0.14502	28.197	28.095	28.24	0					5	3	2	0	0	0	0.73426	1	9334	9334		29.15	0	1	64387			31135	2754	21461	21533	31529	31529					0.029184425083371934
QLKMDILIKK	10	Oxidation (M)	_QLKM(Oxidation (M))DILIKK_		QLKM(1)DILIKK		QLKM(44)DILIKK	0	0	1		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	623.3837280273438	2	623.383591	1244.75263	0.08824	5.5007E-05	0.30415	0.0001896	0.39239	0.00024461	623.383746299734	21.964	0.31403	21.964	21.89	22.204	0					9	6	2	0	0	0	0.5155	1	7368	7368		43.651	14.501	1	144620			31136	9589	21462	21534	31530	31530		384			0.14004322316077378
QLKQWADQL	9	Unmodified	_QLKQWADQL_					0	0	0			REV__ENSG00000189182|ENST00000341809|KRT77	REV__ENSG00000189182|ENST00000341809|KRT77	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3043823242188	2	565.303655	1128.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.859	1	17.859	17.359	18.359	0								0	0	0	0.26578	1	4561	4561		19.997	0	1		+	+	31137	12615	21463	21535	31531	31531					0.03360530363283942
QLKRIHGT	8	Unmodified	_QLKRIHGT_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7879943847656	2	476.787976	951.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.943	1	14.943	14.443	15.443	0								0	0	0	1.7419	1	3160	3160		25.45	0	1		+		31138	14944	21464	21536	31532	31532					0.08368002119857465
QLKTTLEVL	9	Unmodified	_QLKTTLEVL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5;ENSG00000258472|ENST00000531839|unknown	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.8810119628906	3	348.881497	1043.62266	-1.981	-0.00069115	0.95037	0.00033157	-1.0307	-0.00035958	348.8818663984125	28.944	0.14505	28.944	28.867	29.012	0					7	3	3	0	0	0	0.41113	1	9674	9674		40.778	0	1	133710			31139	1562	21465	21537	31533	31533					0.10259469308630287
QLKYLDKS	8	Unmodified	_QLKYLDKS_					0	0	0			REV__ENSG00000117501|ENST00000367759|MROH9	REV__ENSG00000117501|ENST00000367759|MROH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7815856933594	2	497.782025	993.549496	0.69954	0.00034822	0.50273	0.00025025	1.2023	0.00059847	497.78241434358307	29.048	0.44926	29.048	28.807	29.256	0					26	11	3	0	0	0	0.46013	1	10324	10324		64.207	0	1	525440	+		31140	14197	21466	21538	31534	31534					0.05246340585995313
QLLCKGDYE	9	Unmodified	_QLLCKGDYE_					0	0	0		LMX1A|p.S344Kfs*5|1|0.06|ENSG00000162761|chr1:165204000-165204001|-/TTTT|frameshift_variant;ENSG00000162761|ENST00000342310|LMX1A;nc|ENSG00000136944|O60663-2|LMX1B;ENSG00000136944|ENST00000373474|LMX1B;nc|ENSG00000136944|O60663-3|LMX1B	LMX1A|p.S344Kfs*5|1|0.06|ENSG00000162761|chr1:165204000-165204001|-/TTTT|frameshift_variant	LMX1A|p.S344Kfs*5|1|0.06|ENSG00000162761|chr1:165204000-165204001|-/TTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7544555664062	2	534.755149	1067.49575	0.55209	0.00029523	-1.4521	-0.00077654	-0.90005	-0.00048131	534.7532537551275	37.822	0.044117	37.822	37.799	37.844	0					4	2	2	0	0	0	0.41113	1	12364	12364		40.778	0	1	30432			31141	4135	21467	21539	31535	31535					-0.03530199908027498
QLLHAAVES	9	Unmodified	_QLLHAAVES_					0	0	0			REV__nc|ENSG00000163482|Q9NRP7-2|STK36	REV__nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2664489746094	2	484.263999	966.513445	2.4534	0.0011881	-0.044242	-2.1425E-05	2.4092	0.0011667	484.26436801219853	11.546	0.097514	11.546	11.476	11.574	0					9	4	3	0	0	0	0.61124	1	2250	2250		17.365	0.89182	1	93755	+		31142	15883	21468	21540	31536	31536					0.028848834091377284
QLLHNDEY	8	Unmodified	_QLLHNDEY_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.243408203125	2	516.243264	1030.47197	0.26117	0.00013483	0.0078819	4.069E-06	0.26905	0.0001389	516.2432084677956	24.825	0.21243	24.825	24.708	24.92	0					10	6	2	0	0	0	0.41701	1	7377	7377		68.787	13.283	1	243290			31143	6132	21469	21541	31537	31537					-0.04204297350179331
QLLHNDEY	8	Unmodified	_QLLHNDEY_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2435913085938	2	516.243264	1030.47197	0.035963	1.8566E-05	0.28432	0.00014678	0.32029	0.00016535	516.2434103281022	25.098	0.31966	25.098	24.969	25.289	0					13	7	3	0	0	0	0.37378	1	8520	8520		73.975	8.1716	1	1437000			31144	6132	21469	21541	31538	31538					-0.04204297350179331
QLLHNDEY	8	Unmodified	_QLLHNDEY_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2432861328125	2	516.243264	1030.47197	-0.51229	-0.00026446	0.6113	0.00031558	0.099015	5.1116E-05	516.2435223162469	25.084	0.26547	25.084	24.974	25.239	0					12	5	3	0	0	0	0.44433	1	8868	8868		65.803	1.5959	1	818610			31145	6132	21469	21541	31539	31539					-0.04204297350179331
QLLHPVCPK	9	Unmodified	_QLLHPVCPK_					0	0	0			REV__ENST00000467709.6_1_8:25227083-25246387:+|nuORF	REV__ENST00000467709.6_1_8:25227083-25246387:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.5327453613281	3	345.532034	1033.57427	1.5148	0.0005234	0.69745	0.00024099	2.2122	0.00076439	345.5322620261014	14.091	0.16051	14.091	13.994	14.154	0					7	3	3	0	0	0	0.50461	1	3421	3421		24.519	24.519	1	283500	+		31146	15348	21470	21542	31540	31540					0.05882697187712438
QLLKGHDHLQ	10	Unmodified	_QLLKGHDHLQ_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;ENST00000483032.1_1_1:155726967-155727102:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.8876037597656	3	396.887645	1187.64111	0.63441	0.00025179	-0.69794	-0.000277	-0.063531	-2.5215E-05	396.88738902460904	14.124	0.62248	14.124	14.024	14.646	0					29	13	5	0	0	0	0.59277	1	3605	3605		35.152	0	1	2042500			31147	2988	21471	21543	31541	31541					0.054790240031934445
QLLLQPQL	8	Unmodified	_QLLLQPQL_					0	0	0		PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7947998046875	2	476.794935	951.575317	3.5223	0.0016794	-3.8921	-0.0018557	-0.36975	-0.0001763	476.79298944580756	32.896	0.17273	32.896	32.801	32.973	0					8	6	2	0	0	0	0.66372	1	11013	11013		38.806	0	1	24364			31148	11912	21472	21544	31542	31542					0.09759234828266017
QLLLQPQL	8	Unmodified	_QLLLQPQL_					0	0	0		PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7947692871094	2	476.794935	951.575317	-0.11818	-5.6346E-05	-0.33523	-0.00015984	-0.45341	-0.00021618	476.7946548311185	33.067	0.35462	33.067	32.849	33.203	0					21	8	3	0	0	0	0.60719	1	12571	12571		47.916	0	1	266710			31149	11912	21472	21544	31543	31543					0.09759234828266017
QLLMTLYVGK	10	Unmodified	_QLLMTLYVGK_					0	0	0		ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant;ERN2|p.Q822Rfs*35|1|0.26|ENSG00000134398|chr16:23692019-23692019|G/-|frameshift_variant;ENSG00000134398|ENST00000256797|ERN2	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	ERN2|p.L515Wfs*48|1|0.41|ENSG00000134398|chr16:23700665-23700665|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.22784423828125	3	389.226499	1164.65767	3.2001	0.0012456	-0.4073	-0.00015853	2.7928	0.001087	389.2264861533692	22.863	0.36137	22.863	22.755	23.117	0					17	7	4	0	0	0	0.45669	1	7680	7680		50.034	12.525	1	1301000			31150	3918	21473	21545	31544	31544					0.08192388844918241
QLLNSMMTV	9	2 Oxidation (M)	_QLLNSM(Oxidation (M))M(Oxidation (M))TV_		QLLNSM(1)M(1)TV		QLLNSM(57)M(57)TV	0	0	2		STK16|p.L265S|1|0.11|ENSG00000115661|chr2:219248435-219248435|T/C|missense_variant;STK16|p.D276G|1|0.18|ENSG00000115661|chr2:219248468-219248468|A/G|missense_variant;ENSG00000115661|ENST00000396738|STK16	STK16|p.L265S|1|0.11|ENSG00000115661|chr2:219248435-219248435|T/C|missense_variant	STK16|p.L265S|1|0.11|ENSG00000115661|chr2:219248435-219248435|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.75537109375	2	534.756835	1067.49912	-1.3423	-0.00071781	-4.3103	-0.0023049	-5.6526	-0.0030227	534.7548691086513	37.842	0.19584	37.842	37.751	37.947	0					13	9	2	0	0	0	0.24095	1	13536	13536		56.721	10.749	1	34432			31151	2929	21474	21546	31545	31545		125;126			-0.0319327312565747
QLLPVDAIR	9	Unmodified	_QLLPVDAIR_					0	0	0		ENSG00000105926|ENST00000222644|PALS2;MPP6|p.E139Nfs*5|1|0.39|ENSG00000105926|chr7:24649753-24649753|G/-|frameshift_variant	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.8111572265625	2	512.811116	1023.60768	-0.066625	-3.4166E-05	0.11509	5.902E-05	0.048467	2.4854E-05	512.8113477789526	19.937	0.18295	19.937	19.851	20.034	0					8	5	2	0	0	0	0.37197	1	5256	5256		44.117	0	1	244780			31152	2406	21475	21547	31546	31546					0.09682022231277188
QLLQFAAK	8	Unmodified	_QLLQFAAK_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.77532958984375	2	459.774003	917.533452	2.53	0.0011632	0.53543	0.00024618	3.0655	0.0014094	459.7743680683963	16.673	1.0493	16.673	16.565	17.615	0					43	21	4	0	0	0	0.46905	1	4653	4653		63.306	1.1989	1	3928500			31153	1605	21476	21548	31547	31547					0.07138679139745818
QLLQPQLL	8	Unmodified	_QLLQPQLL_					0	0	0			REV__CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant	REV__CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7948303222656	2	476.794935	951.575317	0.0045999	2.1932E-06	0.34963	0.0001667	0.35423	0.0001689	476.79527913920305	32.803	0.27707	32.803	32.672	32.949	0					16	10	2	0	0	0	0.65276	1	10594	10594		40.573	0	1	103440	+		31154	12405	21477	21549	31548	31548					0.09759234828288754
QLLRLLNTT	9	Unmodified	_QLLRLLNTT_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.329833984375	2	536.329673	1070.64479	2.1553	0.001156	-1.5668	-0.00084035	0.58848	0.00031562	536.3288639413203	26.167	0.17601	26.167	26.083	26.259	0					9	4	3	0	0	0	0.30951	1	9007	9007		49.442	6.5773	1	353110			31155	854	21478	21550	31549	31549					0.11229693777045213
QLLSGAHWMDQ	11	Unmodified	_QLLSGAHWMDQ_					0	0	0		GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI	GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant	GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	643.3377075195312	2	643.303329	1284.59211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.44	1	21.44	20.94	21.94	0								0	0	0	0.31865	1	6980	6980		49.536	6.6718	1			+	31156	660	21479	21551	31550	31550					-0.0388063234809124
QLLSWKTEL	9	Unmodified	_QLLSWKTEL_					0	0	0			REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF	REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3184204101562	2	559.316232	1116.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.723	1	31.723	31.223	32.223	0								0	0	0	0.11184	1	11891	11891		68.787	1.2932	1		+	+	31157	12583	21480	21552	31551	31551					0.06426585165854704
QLLTEKSQ	8	Unmodified	_QLLTEKSQ_					0	0	0			REV__ENST00000482295.1_1_9:136213358-136213517:-|nuORF	REV__ENST00000482295.1_1_9:136213358-136213517:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7635498046875	2	473.763832	945.513111	-0.50679	-0.0002401	0.051918	2.4597E-05	-0.45488	-0.0002155	473.7640777363183	29.792	0.2895	29.792	29.682	29.972	0					14	7	3	0	0	0	0.6088	1	10674	10674		47.657	0	1	293840	+		31158	15378	21481	21553	31552	31552					0.038174636892904346
QLMKTQEPA	9	Unmodified	_QLMKTQEPA_					0	0	0		CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2727661132812	2	523.270967	1044.52738	3.4146	0.0017868	-0.76316	-0.00039934	2.6514	0.0013874	523.2706639768201	18.822	0.34536	18.822	18.685	19.031	0					13	7	3	0	0	0	0.33044	1	5718	5718		47.657	0	1	665720			31159	457	21482	21554	31553	31553					0.006897928459011382
QLMWGDFG	8	Unmodified	_QLMWGDFG_					0	0	0			REV__ENST00000307076.8_1_3:52568864-52569062:-|nuORF	REV__ENST00000307076.8_1_3:52568864-52569062:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.21197509765625	2	477.212921	952.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.151	1	19.151	18.651	19.651	0								0	0	0	1.7419	1	4901	4901		12.959	0	1		+		31160	18247	21483	21555	31554	31554					-0.06682105934123683
QLNEKLII	8	Unmodified	_QLNEKLII_					0	0	0			REV__tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	REV__tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7998962402344	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.627	1	34.627	34.127	35.127	0								0	0	0	1.7419	1	11688	11688		37.159	0.13063	1		+		31161	22206	21484	21556	31555	31555					0.09987217482705546
QLNEYDPAG	9	Unmodified	_QLNEYDPAG_					0	0	0			REV__ENST00000564447.5_1_16:29000600-29001330:+|nuORF	REV__ENST00000564447.5_1_16:29000600-29001330:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7252197265625	2	503.727446	1005.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.758	1	16.758	16.258	17.258	0								0	0	0	0.3693	1	4853	4853		19.997	0.89325	1		+		31162	17564	21485	21557	31556	31556					-0.06216290104134714
QLNIAPQL	8	Unmodified	_QLNIAPQL_					0	0	0			REV__ENST00000529246.3_1_6:49519296-49519380:+|nuORF	REV__ENST00000529246.3_1_6:49519296-49519380:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.7633972167969	2	448.763635	895.512717	0.86785	0.00038946	-1.235	-0.00055424	-0.3672	-0.00016479	448.76312840764575	42.956	0.28	42.956	42.839	43.119	0					15	8	2	0	0	0	0.49887	1	17169	17169		60.294	4.7898	1	265600	+		31163	20029	21486	21558	31557	31557					0.06078088760091305
QLNLLKAKQ	9	Unmodified	_QLNLLKAKQ_					0	0	0		BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant;BIRC6|p.I2261Yfs*13|1|0.3|ENSG00000115760|chr2:32476268-32476268|A/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.3330078125	2	528.332216	1054.64988	1.2242	0.00064676	-0.24189	-0.0001278	0.98227	0.00051896	528.3320137112032	18.04	0.12222	18.04	17.958	18.08	0					7	3	3	0	0	0	0.44593	1	4436	4436		23.042	0	1	161590			31164	301	21487	21559	31558	31558					0.12473997639631307
QLNLTVMKK	9	Unmodified	_QLNLTVMKK_					0	0	0		TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.8191528320312	2	537.820627	1073.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.349	1	23.349	22.849	23.849	0								0	0	0	0.24544	1	6745	6745		44.377	0	1				31165	22557	21488	21560	31559	31559					0.09283235530688216
QLNQEKLE	8	Unmodified	_QLNQEKLE_					0	0	0		DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant;ENSG00000157856|ENST00000288710|DRC1	DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant	DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2666931152344	2	501.266739	1000.51892	-0.97246	-0.00048746	-0.23751	-0.00011905	-1.21	-0.00060651	501.2669457336723	28.963	0.11606	28.963	28.88	28.996	0					6	4	2	0	0	0	0.54629	1	9397	9397		55.504	0	1	63426			31166	845	21489	21561	31560	31560					0.018685622009456893
QLNQLQLTQ	9	Unmodified	_QLNQLQLTQ_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3255004882812	2	543.301113	1084.58767	3.6303	0.0019724	-2.2162	-0.001204	1.4141	0.00076831	543.2996986005154	17.778	0.5617	17.778	17.547	18.109	0					25	11	3	0	0	0	0.17854	1	5294	5294		64.207	5.4253	1	343730	+		31167	17036	21490	21562	31561	31561					0.04876226500641678
QLNRPDRRQ	9	Unmodified	_QLNRPDRRQ_					0	0	0			REV__nc|ENSG00000221923|Q6PDB4-2|ZNF880	REV__nc|ENSG00000221923|Q6PDB4-2|ZNF880	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.8274536132812	2	591.826152	1181.63775	1.3611	0.00080553	0.83564	0.00049455	2.1967	0.0013001	591.8266778719271	15.105	0.16994	15.105	14.994	15.164	0					7	3	3	0	0	0	0.15558	1	4048	4048		51.193	51.193	1	276940	+		31168	17612	21491	21563	31562	31562					0.05419773949165574
QLNRPGSKPA	10	Unmodified	_QLNRPGSKPA_					0	0	0			REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.3014526367188	2	534.301447	1066.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.757	1	17.757	17.257	18.257	0								0	0	0	0.37602	1	5331	5331		37.812	9.9293	1		+		31169	12543	21492	21564	31563	31563					0.05771065940371045
QLNSIHFSL	9	Unmodified	_QLNSIHFSL_					0	0	0			REV__ENSG00000185499|ENST00000620103|MUC1	REV__ENSG00000185499|ENST00000620103|MUC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7870483398438	2	529.785099	1057.55564	1.7342	0.00091877	1.4279	0.00075646	3.1621	0.0016752	529.7861450265128	26.425	0.55942	26.425	26.168	26.727	0					26	11	4	0	0	0	0.099922	1	9415	9415		79.451	2.6769	1	2115200	+		31170	17029	21493	21565	31564	31564					0.029168588175025434
QLNSLWNAI	9	Unmodified	_QLNSLWNAI_					0	0	0		nc|ENSG00000161040|Q8NEE6-4|FBXL13;nc|ENSG00000161040|Q8NEE6-3|FBXL13;nc|ENSG00000161040|Q8NEE6-2|FBXL13;nc|ENSG00000161040|Q8NEE6|FBXL13;ENSG00000161040|ENST00000440067|FBXL13	nc|ENSG00000161040|Q8NEE6-4|FBXL13	nc|ENSG00000161040|Q8NEE6-4|FBXL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.787353515625	2	529.785099	1057.55564	0.019504	1.0333E-05	3.3109	0.001754	3.3304	0.0017644	529.7871756234251	26.15	0.39667	26.15	25.889	26.286	0					28	12	3	0	0	0	0.14603	1	8152	8152		68.787	4.5796	1	481770			31171	5402	21494	21566	31565	31565					0.029168588175025434
QLPDIFNQK	9	Unmodified	_QLPDIFNQK_					0	0	0			REV__ENSG00000107295|ENST00000380607|SH3GL2	REV__ENSG00000107295|ENST00000380607|SH3GL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7986450195312	2	551.798206	1101.58186	0.11099	6.1245E-05	0.71283	0.00039334	0.82382	0.00045458	551.7985621802412	39.104	0.18606	39.104	39.004	39.19	0					15	6	3	0	0	0	0.098791	1	15360	15360		79.713	18.741	1	174560	+		31172	13852	21495	21567	31566	31566					0.035131279889810685
QLPDKWQHDL	10	Unmodified	_QLPDKWQHDL_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.21917724609375	3	427.219172	1278.63569	-0.40505	-0.00017305	0.12406	5.3001E-05	-0.28099	-0.00012005	427.2192395352789	34.253	0.40671	34.253	34.053	34.46	0					18	8	3	0	0	0	0.52275	1	13101	13101		42.864	10.114	1	391460			31173	6977	21496	21568	31567	31567					0.007513004207112317
QLPFAKTRK	9	Unmodified	_QLPFAKTRK_					0	0	0		ENST00000272163.8_1_1:225590912-225591005:-|nuORF	ENST00000272163.8_1_1:225590912-225591005:-|nuORF	ENST00000272163.8_1_1:225590912-225591005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.8323364257812	2	544.832383	1087.65021	-1.495	-0.00081455	2.4153	0.0013159	0.92028	0.0005014	544.8335816713475	17.266	0.086636	17.266	17.183	17.27	0					4	2	2	0	0	0	0.54081	1	4260	4260		20.947	10.081	1	82304			31174	8381	21497	21569	31568	31568					0.10989417359519393
QLPNVGSSFT	10	Unmodified	_QLPNVGSSFT_					0	0	0			REV__nc|ENSG00000139865|Q86TZ1-2|TTC6	REV__nc|ENSG00000139865|Q86TZ1-2|TTC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2672729492188	2	525.266739	1048.51892	1.3956	0.00073305	-0.65029	-0.00034157	0.74529	0.00039148	525.2667473538512	19.539	0.14781	19.539	19.431	19.579	0					7	4	2	0	0	0	0.56931	1	5062	5062		37.812	0	1	44654	+		31175	21043	21498	21570	31569	31569					-0.00339437799038933
QLQEFAAAR	9	Unmodified	_QLQEFAAAR_					0	0	0			REV__ENSG00000154174|ENST00000284320|TOMM70	REV__ENSG00000154174|ENST00000284320|TOMM70	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.276611328125	2	517.274898	1032.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.081	1	15.081	14.581	15.581	0								0	0	0	0.15687	1	4052	4052		58.23	5.141	1		+		31176	15560	21499	21571	31570	31570					0.02027688157704688
QLQELAQGFD	10	Unmodified	_QLQELAQGFD_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.7848510742188	2	574.782753	1147.55095	1.6754	0.00096301	2.1167	0.0012167	3.7922	0.0021797	574.7838337979139	42.446	0.26436	42.446	42.257	42.522	0					12	7	2	0	0	0	0.68194	1	16900	16900		13.454	0	1	84543	+		31177	14406	21500	21572	31571	31571					-0.016920701159278906
QLQLEVEAGPL	11	Unmodified	_QLQLEVEAGPL_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.55706787109375	3	399.555561	1195.64485	3.1548	0.0012605	0.259	0.00010348	3.4138	0.001364	399.55579355082205	24.254	0.71033	24.254	23.996	24.707	0					42	14	5	0	0	0	0.66915	1	8303	8303		30.569	1.9921	1	3425600	+		31178	16130	21501	21573	31572	31572					0.0548564898638233
QLQRPEGKTE	10	Unmodified	_QLQRPEGKTE_					0	0	0			REV__nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	REV__nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	593.3138427734375	2	593.314751	1184.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.678	1	21.678	21.178	22.178	0								0	0	0	0.4201	1	6009	6009		22.58	0	1		+		31179	17737	21502	21574	31573	31573					0.030027100410507046
QLQSAPQKFE	10	Unmodified	_QLQSAPQKFE_					0	0	0			REV__ENST00000435590.1_1_21:46097057-46097849:-|nuORF	REV__ENST00000435590.1_1_21:46097057-46097849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.3087158203125	2	588.306395	1174.59824	3.1885	0.0018758	0.78635	0.00046262	3.9749	0.0023384	588.3069301279818	36.905	1.1795	36.905	36.795	37.974	0					55	24	4	0	0	0	0.41055	1	14372	14372		42.864	0	1	1674200	+		31180	19201	21503	21575	31574	31574					0.017922091550644836
QLQVNKESF	9	Unmodified	_QLQVNKESF_					0	0	0			REV__ENST00000422653.1_1_9:88371036-88385349:+|nuORF	REV__ENST00000422653.1_1_9:88371036-88385349:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.78857421875	2	546.787838	1091.56112	1.1341	0.00062012	-0.61094	-0.00033405	0.52318	0.00028607	546.7876506677637	39.682	0.22422	39.682	39.583	39.807	0					23	11	3	0	0	0	0.10915	1	14126	14126		71.296	4.8664	1	174040	+		31181	19090	21504	21576	31575	31575					0.01900537609321873
QLQVSLAVC	9	Unmodified	_QLQVSLAVC_					0	0	0			REV__SHARPIN|p.R202C|1|0.33|ENSG00000179526|chr8:144099758-144099758|G/A|missense_variant	REV__SHARPIN|p.R202C|1|0.33|ENSG00000179526|chr8:144099758-144099758|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7608337402344	2	480.762778	959.511002	-2.924	-0.0014057	-1.4877	-0.00071525	-4.4117	-0.002121	480.7622708252718	24.215	0.27594	24.215	24.11	24.386	0					9	6	2	0	0	0	0.26904	1	7524	7524		53.351	2.016	1	381270	+		31182	21514	21505	21577	31576	31576					0.029627116798110364
QLRALLLS	8	Unmodified	_QLRALLLS_					0	0	0		TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant;ENSG00000188807|ENST00000340381|TMEM201;TMEM201|p.R180H|1|0.29|ENSG00000188807|chr1:9598558-9598558|G/A|missense_variant;nc|ENSG00000188807|Q5SNT2-2|TMEM201	TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant	TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2951965332031	2	457.295102	912.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.996	1	13.996	13.496	14.496	0								0	0	0	1.7419	1	3382	3382		47.916	0	1				31183	7273	21506	21578	31577	31577					0.11586654548136721
QLRCAPPGE	9	Unmodified	_QLRCAPPGE_					0	0	0			REV__nc|ENSG00000173338|Q9Y2U2-2|KCNK7	REV__nc|ENSG00000173338|Q9Y2U2-2|KCNK7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7428283691406	2	485.742376	969.4702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.07	1	21.07	20.57	21.57	0								0	0	0	0.24724	1	6640	6640		44.117	5.3107	1		+		31184	16507	21507	21579	31578	31578					-0.015756296397967162
QLRLEVTPSL	10	Unmodified	_QLRLEVTPSL_					0	0	0			REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.8957824707031	3	385.895917	1154.66592	0.56041	0.00021626	-0.61076	-0.00023569	-0.050351	-1.943E-05	385.8955512057191	31.76	0.16806	31.76	31.65	31.818	0					8	3	3	0	0	0	0.66699	1	11922	11922		26.063	1.5442	1	448100	+		31185	12436	21508	21580	31579	31579					0.09477659085882806
QLRSSKKYK	9	Unmodified	_QLRSSKKYK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.2306823730469	3	379.89614	1136.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.256	1	18.256	17.756	18.756	0								0	0	0	0.3693	1	5306	5306		19.997	0	1				31186	5134;23079	21509	21581	31580	31580					0.10372498525589435
QLRSVYTQ	8	Unmodified	_QLRSVYTQ_					0	0	0		ENST00000570164.5_1_16:31500917-31501493:-|nuORF	ENST00000570164.5_1_16:31500917-31501493:-|nuORF	ENST00000570164.5_1_16:31500917-31501493:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.77081298828125	2	497.769448	993.524344	0.56124	0.00027937	2.0288	0.0010099	2.5901	0.0012893	497.77058873935346	20.586	0.10682	20.586	20.535	20.642	0					6	2	3	0	0	0	0.28427	1	6421	6421		87.754	13.78	1	482860			31187	10792	21510	21582	31581	31581					0.027322857834292336
QLRTGLCLE	9	Unmodified	_QLRTGLCLE_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7774658203125	2	516.778959	1031.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.989	1	17.989	17.489	18.489	0								0	0	0	0.21054	1	5441	5441		49.442	5.3247	1		+		31188	17610	21511	21583	31582	31582					0.02885499082822207
QLRTGTRR	8	Unmodified	_QLRTGTRR_					0	0	0			REV__nc|ENSG00000182362|P58557-4|YBEY	REV__nc|ENSG00000182362|P58557-4|YBEY	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2924499511719	2	494.293956	986.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.93	1	20.93	20.43	21.43	0								0	0	0	1.7419	1	5926	5926		32.812	3.6629	1		+		31189	16881	21512	21584	31583	31583					0.07953618863052725
QLRTSFLK	8	Unmodified	_QLRTSFLK_					0	0	0		ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7978820800781	2	496.798009	991.581465	0.71622	0.00035582	-0.60951	-0.0003028	0.10671	5.3015E-05	496.79752597861375	27.296	0.26337	27.296	27.209	27.472	0					14	6	3	0	0	0	0.41701	1	9530	9530		68.787	2.3575	1	575320			31190	6384	21513	21585	31584	31584					0.08533753059805349
QLSENRKP	8	Unmodified	_QLSENRKP_					0	0	0		PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant;PCM1|p.I260Sfs*14|1|0.44|ENSG00000078674|chr8:17939850-17939850|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.266845703125	2	486.267073	970.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.808	1	17.808	17.308	18.308	0								0	0	0	1.7419	1	4537	4537		68.787	4.5796	1				31191	11912	21514	21586	31585	31585					0.03315401640657001
QLSGDTAKEIR	11	Unmodified	_QLSGDTAKEIR_					0	0	0			REV__ENST00000465529.1_1_22:35695897-35713955:+|nuORF	REV__ENST00000465529.1_1_22:35695897-35713955:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.8915100097656	3	406.554331	1216.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.378	1	23.378	22.878	23.878	0								0	0	0	0.4462	1	7126	7126		26.75	1.6237	1		+		31192	13533	21515	21587	31586	31586					0.04150979212499806
QLSGREQEL	9	Unmodified	_QLSGREQEL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC;ENST00000426910.1_1_X:134568027-134569581:+|nuORF	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2747192382812	2	530.275095	1058.53564	0.28685	0.00015211	-0.32094	-0.00017019	-0.034093	-1.8079E-05	530.2748971904397	33.132	0.14019	33.132	33.036	33.176	0					6	3	2	0	0	0	0.55379	1	12644	12644		26.693	1.1189	1	112380			31193	1303	21516	21588	31587	31587					0.008710630869018132
QLSHAWTR	8	Unmodified	_QLSHAWTR_					0	0	0			REV__chr19:48399145-48404734|443|21.72|0.26|6.36|+|0|None,GRIN2D|1	REV__chr19:48399145-48404734|443|21.72|0.26|6.36|+|0|None,GRIN2D|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7618103027344	2	499.761958	997.509363	-1.0398	-0.00051966	0.30288	0.00015137	-0.73693	-0.00036829	499.76214525716233	15.673	0.12125	15.673	15.604	15.725	0					8	5	2	0	0	0	0.60719	1	3612	3612		47.916	47.916	1	205830	+		31194	12481	21517	21589	31588	31588					0.010508387060895075
QLSHEEQL	8	Unmodified	_QLSHEEQL_					0	0	0			REV__ENSG00000087502|ENST00000360150|ERGIC2	REV__ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2428283691406	2	492.243264	982.471974	-1.2635	-0.00062197	0.76613	0.00037712	-0.49742	-0.00024485	492.24393703466063	27.398	0.29283	27.398	27.327	27.62	0					16	10	2	0	0	0	0.67394	1	8765	8765		37.159	0	1	116680	+		31195	13387	21518	21590	31589	31589					-0.019962973501833403
QLSPKPLPG	9	Unmodified	_QLSPKPLPG_					0	0	0			REV__ENSG00000088053|ENST00000310373|GP6	REV__ENSG00000088053|ENST00000310373|GP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.779052734375	2	468.779285	935.544017	-1.1378	-0.00053339	3.219	0.001509	2.0811	0.00097558	468.78099314806576	26.15	0.24578	26.15	26	26.245	0					11	8	2	0	0	0	0.30951	1	8209	8209		49.442	1.5259	1	84597	+		31196	13388	21519	21591	31590	31590					0.07366661794173979
QLSTVIGAK	9	Unmodified	_QLSTVIGAK_					0	0	0			REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7767028808594	2	458.776742	915.538931	0.72204	0.00033126	-1.2477	-0.00057241	-0.52565	-0.00024116	458.776028266491	16.904	0.36425	16.904	16.801	17.166	0					9	7	2	0	0	0	0.13267	1	4939	4939		71.877	2.2498	1	602110	+		31197	13202	21520	21592	31591	31591					0.07778357931556457
QLSVCSHYV	9	Unmodified	_QLSVCSHYV_					0	0	0		nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-5|RIMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2510375976562	2	518.250034	1034.48552	0.099905	5.1776E-05	2.9787	0.0015437	3.0786	0.0015955	518.2516688560455	21.67	0.2784	21.67	21.546	21.825	0					10	8	2	0	0	0	0.2873	1	6251	6251		51.335	7.2187	1	160250			31198	11657	21521	21593	31592	31592					-0.030347628425943185
QLTAAELKQI	10	Unmodified	_QLTAAELKQI_					0	0	0		BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant;BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant;ENSG00000178409|ENST00000369042|BEND3	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.2204284667969	3	372.220401	1113.63937	0.38485	0.00014325	-0.3262	-0.00012142	0.058653	2.1832E-05	372.2202516468949	26.243	0.25539	26.243	26.112	26.368	0					11	6	2	0	0	0	0.16745	1	9034	9034		83.647	14.801	1	629080			31199	294	21522	21594	31593	31593					0.08709970194558991
QLTGPVMPV	9	Unmodified	_QLTGPVMPV_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.25994873046875	2	471.259871	940.505189	0.55499	0.00026154	-0.73126	-0.00034461	-0.17627	-8.307E-05	471.2596499775129	44.658	0.15475	44.658	44.545	44.699	0					17	9	3	0	0	0	0.57706	1	16694	16694		24.203	1.1603	1	110970			31200	5997	21523	21595	31594	31594					0.03255613168164473
QLTKDKVQ	8	Unmodified	_QLTKDKVQ_					0	0	0			REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2795104980469	2	480.279649	958.544745	-1.3864	-0.00066587	1.057	0.00050765	-0.32942	-0.00015821	480.2801612416507	24.652	0.12734	24.652	24.585	24.712	0					9	4	3	0	0	0	0.57171	1	7565	7565		52.937	1.744	1	147390	+		31201	13747	21524	21596	31595	31595					0.06381456443239131
QLTMAGRSPL	10	Unmodified	_QLTMAGRSPL_					0	0	0			REV__ENSG00000153012|ENST00000382114|LGI2	REV__ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2925415039062	2	537.292233	1072.56991	0.69742	0.00037472	-0.51559	-0.00027702	0.18183	9.7697E-05	537.2920175139091	18.329	1.1317	18.329	17.931	19.063	0					69	23	5	0	0	0	0.40476	1	5550	5550		59.931	17.535	1	26363000	+		31202	15527	21525	21597	31596	31596					0.03653187974168759
QLTQKTSVPP	10	Unmodified	_QLTQKTSVPP_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3175659179688	2	549.811313	1097.60807	3.7607	0.0020677	1.5546	0.00085472	5.3152	0.0029224	549.8114825031327	28.405	0.71448	28.405	28.277	28.992	0					37	14	5	0	0	0	0.3337	1	10362	10362		63.534	15.877	1	4080500			31203	6794	21526	21598	31597	31597					0.06317397160478322
QLTRLSVGPV	10	Unmodified	_QLTRLSVGPV_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3219604492188	2	535.321848	1068.62914	0.17871	9.5669E-05	-0.031287	-1.6749E-05	0.14743	7.8921E-05	535.3220002353337	23.172	0.4438	23.172	22.958	23.401	0					35	10	5	0	0	0	0.49411	1	7581	7581		45.972	2.3215	1	6728100	+		31204	14138	21527	21599	31598	31598					0.09757407259985484
QLTTKSSVH	9	Unmodified	_QLTTKSSVH_					0	0	0			REV__NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant	REV__NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.774658203125	2	500.774731	999.534909	-0.1371	-6.8655E-05	0.84604	0.00042367	0.70894	0.00035502	500.7751028924126	15.772	0.41922	15.772	15.56	15.979	0					24	10	3	0	0	0	0.30951	1	4192	4192		49.442	1.7842	1	2243400	+		31205	13142	21528	21600	31599	31599					0.035122684378507074
QLTVNSEK	8	Unmodified	_QLTVNSEK_					0	0	0		ENSG00000103723|ENST00000535359|AP3B2;nc|ENSG00000103723|Q13367-2|AP3B2;ENST00000537735.1_1_15:83328314-83331023:-|nuORF;ENST00000543938.5_1_15:83328314-83349061:-|nuORF;nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7484436035156	2	459.748182	917.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.498	1	18.498	17.998	18.998	0								0	0	0	1.7419	1	4612	4612		34.173	1.3601	1				31206	2258	21529	21601	31600	31600					0.019768906551917098
QLTYKLAKV	9	Unmodified	_QLTYKLAKV_					0	0	0			REV__ENST00000261250.7_1_12:4598305-4598689:-|nuORF	REV__ENST00000261250.7_1_12:4598305-4598689:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8218383789062	2	532.329142	1062.64373	2.381	0.0012675	-2.0202	-0.0010754	0.36082	0.00019208	532.3283858914355	30.528	0.13415	30.528	30.445	30.579	0					5	3	2	0	0	0	0.42902	1	10994	10994		39.253	4.1008	1	173630	+		31207	18012	21530	21602	31601	31601					0.11491479408118721
QLVAYHRY	8	Unmodified	_QLVAYHRY_					0	0	0		ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7816162109375	2	525.279983	1048.54541	1.7745	0.00093213	-1.3728	-0.00072109	0.40177	0.00021104	525.278851082085	39.673	0.77856	39.673	39.219	39.998	0					66	27	3	0	0	0	0.64096	1	15474	15474		42.474	1.9018	1	391620			31208	8801	21531	21603	31602	31602					0.023082958829490963
QLVDAFLKL	9	Unmodified	_QLVDAFLKL_					0	0	0		nc|ENSG00000198690|Q9Y2M0-2|FAN1;ENSG00000198690|ENST00000362065|FAN1;ENST00000565280.5_1_15:31198658-31229456:+|nuORF	nc|ENSG00000198690|Q9Y2M0-2|FAN1	nc|ENSG00000198690|Q9Y2M0-2|FAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8181762695312	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.418	1	35.418	34.918	35.918	0								0	0	0	0.072369	1	13724	13724		79.713	2.395	1				31209	7587	21532	21604	31603	31603					0.09619790516785542
QLVEAGRLVA	10	Unmodified	_QLVEAGRLVA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3145751953125	2	528.314023	1054.61349	0.28525	0.0001507	0.70505	0.00037249	0.99031	0.00052319	528.3144508211617	30.849	0.13649	30.849	30.798	30.935	0					5	3	2	0	0	0	0.59277	1	11584	11584		35.152	0	1	38162			31210	4144	21533	21605	31604	31604					0.08837120742941806
QLVGAPLTK	9	Unmodified	_QLVGAPLTK_					0	0	0			REV__DCANP1|p.R82Q|1|0.29|ENSG00000251380|chr5:135446864-135446864|C/T|missense_variant	REV__DCANP1|p.R82Q|1|0.29|ENSG00000251380|chr5:135446864-135446864|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7867431640625	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.304	1	35.304	34.804	35.804	0								0	0	0	0.1633	1	13671	13671		56.721	1.2168	1		+		31211	12673	21534	21606	31605	31605					0.09390948311215652
QLVPVTRGAP	10	Unmodified	_QLVPVTRGAP_					0	0	0			REV__ENST00000397091.9_1_8:38325804-38325987:-|nuORF	REV__ENST00000397091.9_1_8:38325804-38325987:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.32177734375	2	519.308741	1036.60293	3.3542	0.0017419	-2.0759	-0.001078	1.2783	0.00066382	519.3078029617003	20.867	0.26579	20.867	20.811	21.076	0					8	5	2	0	0	0	0.39827	1	6689	6689		56.434	1.6575	1	134020	+		31212	18907	21535	21607	31606	31606					0.08609138088490909
QLVTAEERP	9	Unmodified	_QLVTAEERP_					0	0	0			REV__PTCD1|p.I598Hfs*42|1|0.12|ENSG00000106246|chr7:99423904-99423905|-/A|frameshift_variant	REV__PTCD1|p.I598Hfs*42|1|0.12|ENSG00000106246|chr7:99423904-99423905|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7818603515625	2	521.780013	1041.54547	0.37223	0.00019422	1.1875	0.00061963	1.5598	0.00081385	521.780751902618	12.164	0.32446	12.164	11.961	12.286	0					42	20	3	0	0	0	0.59802	1	2350	2350		21.96	5.4867	1	233260	+		31213	13816	21536	21608	31607	31607					0.026362510922808724
QLWASFPP	8	Unmodified	_QLWASFPP_					0	0	0			REV__VPS37C|p.A339Pfs*99|1|0.54|ENSG00000167987|chr11:61131880-61131880|G/-|frameshift_variant	REV__VPS37C|p.A339Pfs*99|1|0.54|ENSG00000167987|chr11:61131880-61131880|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.74542236328125	2	473.245078	944.475603	-0.58175	-0.00027531	-1.0863	-0.00051411	-1.6681	-0.00078942	473.24465866320946	20.6	0.41494	20.6	20.344	20.759	0					19	8	3	0	0	0	0.70055	1	6609	6609		33.516	1.5607	1	599460	+		31214	18209	21537	21609	31608	31608					0.0011441721433129715
QLWSPLQP	8	Unmodified	_QLWSPLQP_					0	0	0			REV__ENSG00000104147|ENST00000220514|OIP5	REV__ENSG00000104147|ENST00000220514|OIP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7642517089844	2	484.763635	967.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.358	1	11.358	10.858	11.858	0								0	0	0	1.7419	1	2305	2305		23.042	1.0826	1		+		31215	13712	21538	21610	31609	31609					0.027660887600859496
QLYASFAIRA	10	Unmodified	_QLYASFAIRA_					0	0	0			REV__ENST00000555422.5_1_14:76198560-76243086:+|nuORF	REV__ENST00000555422.5_1_14:76198560-76243086:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.3147583007812	2	570.314023	1138.61349	0.097433	5.5568E-05	0.72448	0.00041318	0.82192	0.00046875	570.3145501387548	25.576	0.3054	25.576	25.429	25.734	0					22	10	3	0	0	0	0.39647	1	7935	7935		52.937	21.407	1	97632	+		31216	20243	21539	21611	31610	31610					0.04973120742943138
QLYKTKQVDFF	11	Unmodified	_QLYKTKQVDFF_					0	0	0			REV__TMEM104|p.V362Sfs*13|1|0.42|ENSG00000109066|chr17:74836276-74836276|C/-|frameshift_variant	REV__TMEM104|p.V362Sfs*13|1|0.42|ENSG00000109066|chr17:74836276-74836276|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	708.8775024414062	2	708.879727	1415.7449	-2.8553	-0.0020241	0.17964	0.00012734	-2.6757	-0.0018967	708.8798450568767	33.527	0.37032	33.527	33.327	33.698	0					25	9	4	0	0	0	0.26168	1	12399	12399		67.494	12.771	1	503090	+		31217	13892	21540	21612	31611	31611					0.05365886320169011
QLYRHSQEK	9	Unmodified	_QLYRHSQEK_					0	0	0		ENST00000497302.1_1_1:12049245-12049278:+|nuORF	ENST00000497302.1_1_1:12049245-12049278:+|nuORF	ENST00000497302.1_1_1:12049245-12049278:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.8097534179688	2	594.809636	1187.60472	0.23022	0.00013694	0.14119	8.3982E-05	0.37141	0.00022092	594.8096616207085	14.374	0.090002	14.374	14.327	14.417	0					4	2	2	0	0	0	0.037712	1	3495	3495		101.46	18.709	1	679720			31218	10125	21541	21613	31612	31612					0.018421471064584694
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.3255004882812	2	607.825089	1213.63563	0.15423	9.3746E-05	-0.081234	-4.9376E-05	0.072997	4.4369E-05	607.8249383175147	21.658	0.52331	21.658	21.539	22.062	0					26	15	2	0	0	0	0.14578	1	5968	5968		68.846	18.813	1	142540			31219	7797	21542	21614	31613	31613					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.8252563476562	2	607.825089	1213.63563	-0.60213	-0.00036599	0.56493	0.00034338	-0.0372	-2.2611E-05	607.8254515073872	21.906	0.95665	21.906	21.809	22.766	0					51	22	4	0	0	0	0.13726	1	7022	7022		70.816	23.159	1	1275000			31220	7797	21542	21614	31614	31614					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.824951171875	2	607.825089	1213.63563	0.51422	0.00031256	-0.44564	-0.00027087	0.068589	4.169E-05	607.8249025557473	21.801	0.41059	21.801	21.692	22.102	0					12	8	2	0	0	0	0.1424	1	7298	7298		69.628	9.5094	1	320080			31221	7797	21542	21614	31615	31615					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.5524597167969	3	405.552485	1213.63563	-0.10824	-4.3898E-05	0.11424	4.633E-05	0.005998	2.4325E-06	405.55246301105694	21.76	1.2536	21.76	21.629	22.883	0					38	28	3	0	0	0	0.39215	1	6339	6339		58.23	30.676	1	405860			31222	7797	21542	21614	31616	31616					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	607.8251342773438	2	607.825089	1213.63563	-1.9434	-0.0011813	2.2237	0.0013516	0.2803	0.00017037	607.826538387626	21.711	0.57908	21.711	21.623	22.202	0					18	13	2	0	0	0	0.22837	1	6355	6355		58.23	26.275	1	189010			31223	7797	21542	21614	31617	31617					0.03735345211339336
QMATYLVSSTD	11	Unmodified	_QMATYLVSSTD_					0	0	0			REV__PDGFRB|p.V1012M|1|0.23|ENSG00000113721|chr5:150117721-150117721|C/T|missense_variant	REV__PDGFRB|p.V1012M|1|0.23|ENSG00000113721|chr5:150117721-150117721|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.2821655273438	2	608.281728	1214.5489	1.5787	0.00096031	-0.43507	-0.00026465	1.1436	0.00069566	608.281644575412	25.203	0.25278	25.203	25.119	25.372	0					12	7	2	0	0	0	0.7326	1	7597	7597		24.519	2.5593	1	65077	+		31224	21352	21543	21615	31618	31618					-0.049788669160079735
QMCEVPVNTP	10	Unmodified	_QMCEVPVNTP_					0	0	0		DIS3L|p.M446V|1|0.25|ENSG00000166938|chr15:66322696-66322696|A/G|missense_variant	DIS3L|p.M446V|1|0.25|ENSG00000166938|chr15:66322696-66322696|A/G|missense_variant	DIS3L|p.M446V|1|0.25|ENSG00000166938|chr15:66322696-66322696|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.2569580078125	2	559.254459	1116.49437	1.2871	0.0007198	3.5338	0.0019763	4.8209	0.0026961	559.2559828371836	22.926	0.19347	22.926	22.839	23.033	0					10	6	2	0	0	0	0.63224	1	6559	6559		30.318	0	1	98510			31225	792	21544	21616	31619	31619					-0.05922157268423689
QMEEMKTRH	9	Unmodified	_QMEEMKTRH_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	595.2740478515625	2	595.276257	1188.53796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.8	1	30.8	30.3	31.3	0								0	0	0	0.3304	1	10150	10150		29.15	1.0681	1				31226	11515	21545	21617	31620	31620					-0.04876547771300466
QMELMEYK	8	Oxidation (M)	_QMELM(Oxidation (M))EYK_		QMELM(1)EYK		QM(-38)ELM(38)EYK	0	0	1		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant;KIF21A|p.S524Lfs*15|1|0.26|ENSG00000139116|chr12:39351880-39351880|A/-|frameshift_variant;KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant;KIF21A|p.N748Ifs*9|1|0.3|ENSG00000139116|chr12:39340232-39340232|T/-|frameshift_variant;KIF21B|p.G528Afs*13|1|0.43|ENSG00000116852|chr1:201000492-201000492|C/-|frameshift_variant;nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000116852|O75037-3|KIF21B	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.1653137207031	3	363.164799	1086.47257	1.1179	0.000406	-0.36182	-0.0001314	0.75612	0.0002746	363.16486341528474	22.379	0.76769	22.379	22.27	23.038	0					39	15	5	0	0	0	0.48092	1	7446	7446		62.107	7.3311	2	1987400			31227	4303;3008	21546	21618	31621	31621		132			-0.06720962017016063
QMEPAGGRPP	10	Unmodified	_QMEPAGGRPP_					0	0	0			REV__ENST00000326153.9_1_X:224107-229437:-|nuORF	REV__ENST00000326153.9_1_X:224107-229437:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	347.1709899902344	3	347.171164	1038.49166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.324	1	26.324	25.824	26.824	0								0	0	0	0.4201	1	8460	8460		18.531	0.26896	1		+		31228	18355	21547	21619	31622	31622					-0.02604244611075046
QMEQGPNAT	9	Unmodified	_QMEQGPNAT_					0	0	0			REV__ENST00000558995.5_1_14:24543475-24546936:+|nuORF	REV__ENST00000558995.5_1_14:24543475-24546936:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.21533203125	2	488.213649	974.412745	2.5817	0.0012604	0.90039	0.00043958	3.4821	0.0017	488.2140567756284	24.937	0.25583	24.937	24.837	25.093	0					9	5	2	0	0	0	0.30951	1	8681	8681		49.442	0.23076	1	641600	+		31229	13577	21548	21620	31623	31623					-0.0754851663602949
QMERLAPGP	9	Unmodified	_QMERLAPGP_					0	0	0		ARHGAP40|p.K441Sfs*20|1|0.15|ENSG00000124143|chr20:38643815-38643815|C/-|frameshift_variant;ENSG00000124143|ENST00000373345|ARHGAP40	ARHGAP40|p.K441Sfs*20|1|0.15|ENSG00000124143|chr20:38643815-38643815|C/-|frameshift_variant	ARHGAP40|p.K441Sfs*20|1|0.15|ENSG00000124143|chr20:38643815-38643815|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7609558105469	2	499.758027	997.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.952	1	15.952	15.452	16.452	0								0	0	0	0.15451	1	4318	4318		58.782	10.866	1				31230	210	21549	21621	31624	31624					0.002649433943133772
QMFGIYGPEQ	10	Unmodified	_QMFGIYGPEQ_					0	0	0		MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant;MYO15A|p.E2245Kfs*8|1|0.44|ENSG00000091536|chr17:18148533-18148533|G/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A	MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant	MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.267333984375	2	585.268424	1168.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.394	1	21.394	20.894	21.894	0								0	0	0	0.39244	1	6194	6194		32.812	0.85756	1				31231	1861	21550	21622	31625	31625					-0.05522511016692988
QMGGGRDSEEM	11	Unmodified	_QMGGGRDSEEM_					0	0	0		DNAJB4|p.R115Q|1|0.32|ENSG00000162616|chr1:78013183-78013183|G/A|missense_variant	DNAJB4|p.R115Q|1|0.32|ENSG00000162616|chr1:78013183-78013183|G/A|missense_variant	DNAJB4|p.R115Q|1|0.32|ENSG00000162616|chr1:78013183-78013183|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.7386474609375	2	598.737162	1195.45977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.104	1	12.104	11.604	12.604	0								0	0	0	0.45674	1	2642	2642		23.523	1.5628	1				31232	826	21551	21623	31626	31626					-0.13014025147208486
QMGKRCSCM	9	Unmodified	_QMGKRCSCM_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2179565429688	2	522.2163	1042.41805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.183	1	44.183	43.683	44.683	0								0	0	0	0.3119	1	17703	17703		32.812	4.9302	1		+		31233	14529	21552	21624	31627	31627					-0.10146575641078925
QMGLLQHEL	9	Unmodified	_QMGLLQHEL_					0	0	0			REV__ENST00000393860.7_1_17:40283628-40283751:-|nuORF	REV__ENST00000393860.7_1_17:40283628-40283751:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7814331054688	2	534.778959	1067.54336	2.2447	0.0012004	1.8105	0.00096823	4.0552	0.0021686	534.780061907771	11.821	0.14683	11.821	11.773	11.92	0					8	5	2	0	0	0	0.071197	1	2366	2366		87.754	18.967	1	385060	+		31234	18856	21553	21625	31628	31628					0.012294990828195296
QMGPRRLS	8	Unmodified	_QMGPRRLS_					0	0	0		ENST00000532045.5_1_11:834538-836571:+|nuORF	ENST00000532045.5_1_11:834538-836571:+|nuORF	ENST00000532045.5_1_11:834538-836571:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2589111328125	2	472.758361	943.502169	-0.54976	-0.0002599	4.2219	0.0019959	3.6721	0.001736	472.76203951534126	14.792	0.37998	14.792	14.643	15.023	0					25	9	4	0	0	0	0.51384	1	3662	3662		58.782	2.3482	1	761770			31235	10446	21554	21626	31629	31629					0.028157828340226843
QMIEAYRKA	9	Unmodified	_QMIEAYRKA_					0	0	0		tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2931518554688	2	555.292233	1108.56991	1.8133	0.0010069	-0.061907	-3.4376E-05	1.7514	0.00097253	555.2921644170882	28.169	0.5398	28.169	27.879	28.419	0					30	13	4	0	0	0	0.28897	1	9937	9937		51.193	1.1682	1	726040			31236	23055	21555	21627	31630	31630					0.019971879741660814
QMKKQEKK	8	Unmodified	_QMKKQEKK_					0	0	0			REV__CEP350|p.R2078M|1|0.38|ENSG00000135837|chr1:180084126-180084126|G/T|missense_variant	REV__CEP350|p.R2078M|1|0.38|ENSG00000135837|chr1:180084126-180084126|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.3034057617188	2	524.302601	1046.59065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.111	1	16.111	15.611	16.611	0								0	0	0	1.7419	1	4540	4540		30.504	0	1		+		31237	12431	21556	21628	31631	31631					0.06921778353807895
QMLEPKQV	8	Unmodified	_QMLEPKQV_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.763916015625	2	486.762778	971.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.778	1	17.778	17.278	18.278	0								0	0	0	1.7419	1	5077	5077		11.511	1.2458	1		+		31238	16139	21557	21629	31632	31632					0.024107116798290917
QMLFESTDV	9	Unmodified	_QMLFESTDV_					0	0	0		XKR7|p.A226T|1|0.34|ENSG00000260903|chr20:31995159-31995159|G/A|missense_variant	XKR7|p.A226T|1|0.34|ENSG00000260903|chr20:31995159-31995159|G/A|missense_variant	XKR7|p.A226T|1|0.34|ENSG00000260903|chr20:31995159-31995159|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.1670837402344	3	357.167197	1068.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.505	1	45.505	45.005	46.005	0								0	0	0	0.3693	1	18226	18226		19.997	0.73409	1				31239	23120	21558	21630	31633	31633					-0.05173906144932516
QMLHPILR	8	Unmodified	_QMLHPILR_					0	0	0		ERP44|p.F68Lfs*18|1|0.17|ENSG00000023318|chr9:100052499-100052499|A/-|frameshift_variant	ERP44|p.F68Lfs*18|1|0.17|ENSG00000023318|chr9:100052499-100052499|A/-|frameshift_variant	ERP44|p.F68Lfs*18|1|0.17|ENSG00000023318|chr9:100052499-100052499|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.29351806640625	2	504.294579	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.558	1	40.558	40.058	41.058	0								0	0	0	1.7419	1	15463	15463		38.806	9.6566	1				31240	11118	21559	21631	31634	31634					0.07158116907601197
QMLRGQPAL	9	Unmodified	_QMLRGQPAL_					0	0	0		BOC|p.P449H|1|0.59|ENSG00000144857|chr3:113274486-113274486|C/A|missense_variant;nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC	BOC|p.P449H|1|0.59|ENSG00000144857|chr3:113274486-113274486|C/A|missense_variant	BOC|p.P449H|1|0.59|ENSG00000144857|chr3:113274486-113274486|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.5234680175781	3	338.523538	1012.54878	0.53143	0.0001799	-0.81766	-0.0002768	-0.28622	-9.6894E-05	338.5232977236102	14.772	0.36491	14.772	14.663	15.028	0					14	7	3	0	0	0	0.5654	1	3915	3915		32.812	8.2932	1	1497600			31241	309	21560	21632	31635	31635					0.04301222665299065
QMMLNRFSH	9	Unmodified	_QMMLNRFSH_					0	0	0			REV__ENST00000367142.4_1_1:205693083-205719238:-|nuORF	REV__ENST00000367142.4_1_1:205693083-205719238:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.277587890625	2	582.27606	1162.53757	3.2326	0.0018823	0.49751	0.00028969	3.7301	0.002172	582.2763780710175	37.635	0.43932	37.635	37.535	37.974	0					23	9	4	0	0	0	0.071197	1	14722	14722		87.754	20.261	1	2424900	+		31242	18593	21561	21633	31636	31636					-0.03719922700497591
QMNPVFGKK	9	Unmodified	_QMNPVFGKK_					0	0	0			REV__RTCB|p.M246Wfs*11|4|0.28|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant	REV__RTCB|p.M246Wfs*11|4|0.28|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7828979492188	2	524.784044	1047.55354	0.69612	0.00036531	-3.7013	-0.0019424	-3.0052	-0.0015771	524.7820750447729	16.1	0.12847	16.1	16.051	16.179	0					11	5	3	0	0	0	0.21263	1	3604	3604		63.306	19.189	1	229620	+		31243	13522	21562	21634	31637	31637					0.031661068080666155
QMPLLPVPLL	10	Unmodified	_QMPLLPVPLL_					0	0	0		ENST00000472410.5_1_1:27684311-27685985:-|nuORF	ENST00000472410.5_1_1:27684311-27685985:-|nuORF	ENST00000472410.5_1_1:27684311-27685985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.2326965332031	3	374.231473	1119.67259	3.2329	0.0012098	0.15661	5.8608E-05	3.3895	0.0012684	374.23155587621505	32.093	0.4697	32.093	31.885	32.355	0					23	9	4	0	0	0	0.69544	1	12105	12105		22.58	22.58	1	606310			31244	9864	21563	21635	31638	31638					0.11753880712922182
QMQLVKKK	8	Unmodified	_QMQLVKKK_					0	0	0			REV__ENST00000320985.14_1_10:31750007-31791278:+|nuORF	REV__ENST00000320985.14_1_10:31750007-31791278:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.80999755859375	2	501.810062	1001.60557	1.1322	0.00056817	-1.3544	-0.00067966	-0.22218	-0.00011149	501.80920731603055	11.377	0.04239	11.377	11.356	11.398	0					4	2	2	0	0	0	0.52345	1	2203	2203		57.811	4.4598	1	53369	+		31245	18324	21564	21636	31639	31639					0.10483270221834573
QMRLKNHRWYK	11	Unmodified	_QMRLKNHRWYK_					0	0	0		ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.6199340820312	3	520.617383	1558.83032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.601	1	49.601	49.101	50.101	0								0	0	0	0.45674	1	17896	17896		17.833	4.3252	1				31246	9601	21565	21637	31640	31640					0.07325773024831506
QMRRMVKK	8	Unmodified	_QMRRMVKK_					0	0	0			REV__nc|ENSG00000106633|P35557-3|GCK	REV__nc|ENSG00000106633|P35557-3|GCK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.815185546875	2	538.812613	1075.61067	4.9412	0.0026624	0.38168	0.00020565	5.3228	0.002868	538.8128055125405	14.036	0.12074	14.036	13.956	14.077	0					14	6	3	0	0	0	0.5676	1	2965	2965		42.474	42.474	1	155430	+		31247	13832	21566	21638	31641	31641					0.0758925081279358
QMSLEKKE	8	Unmodified	_QMSLEKKE_					0	0	0		ENSG00000273559|ENST00000614790|CWC25	ENSG00000273559|ENST00000614790|CWC25	ENSG00000273559|ENST00000614790|CWC25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2557373046875	2	496.757692	991.500831	0.98253	0.00048808	-1.3742	-0.00068266	-0.39169	-0.00019458	496.7575586232436	34.822	1.3582	34.822	34.474	35.833	0					89	27	7	0	0	0	0.58597	1	13348	13348		51.335	1.8939	1	61685000			31248	8094	21567	21639	31642	31642					0.004741039545933745
QMSLSLLPPD	10	Oxidation (M)	_QM(Oxidation (M))SLSLLPPD_		QM(1)SLSLLPPD		QM(73)SLSLLPPD	0	0	1		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7862548828125	2	558.783907	1115.55326	3.469	0.0019384	0.45436	0.00025389	3.9234	0.0021923	558.7841905318671	23.955	0.31564	23.955	23.897	24.213	0					11	6	3	0	0	0	0.2538	1	8233	8233		72.879	10.772	1	511480			31249	2107	21568	21640	31643	31643		97			0.00010642297547747148
QMSNITVTY	9	Unmodified	_QMSNITVTY_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.75537109375	2	528.755149	1055.49575	0.90452	0.00047827	-0.72962	-0.00038579	0.17491	9.2482E-05	528.754884984779	40.474	0.18393	40.474	40.397	40.581	0					16	7	3	0	0	0	0.3269	1	15958	15958		47.96	8.7067	1	91777			31250	1964	21569	21641	31644	31644					-0.029781999080114474
QMSNITVTY	9	Unmodified	_QMSNITVTY_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7539672851562	2	528.755149	1055.49575	1.2426	0.00065703	-1.2758	-0.0006746	-0.033226	-1.7569E-05	528.7545204169405	40.259	0.068253	40.259	40.21	40.279	0					5	3	2	0	0	0	0.40353	1	14317	14317		41.427	3.6151	1	44535			31251	1964	21569	21641	31645	31645					-0.029781999080114474
QMSNITVTY	9	Unmodified	_QMSNITVTY_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.755615234375	2	528.755149	1055.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.438	1	40.438	39.938	40.938	0								0	0	0	0.063706	1	16055	16055		82.241	5.4664	1				31252	1964	21569	21641	31646	31646					-0.029781999080114474
QMSPIIQSG	9	Unmodified	_QMSPIIQSG_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7431945800781	2	480.744585	959.474617	-0.16184	-7.7804E-05	-2.0296	-0.0009757	-2.1914	-0.0010535	480.7431468528381	30.912	0.5661	30.912	30.514	31.08	0					16	13	2	0	0	0	0.37197	1	11206	11206		44.117	1.7207	1	269170			31253	11564	21570	21642	31647	31647					-0.006741652168557266
QMTRSLASP	9	Unmodified	_QMTRSLASP_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;nc|ENSG00000100099|Q9NQG7-2|HPS4;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7534484863281	2	495.755484	989.496415	-0.76315	-0.00037834	-2.8627	-0.0014192	-3.6258	-0.0017975	495.7540059693927	21.104	0.21331	21.104	20.947	21.16	0					7	4	2	0	0	0	0.42902	1	6959	6959		39.253	2.8061	1	187050			31254	1971	21571	21643	31648	31648					0.0012463953167980435
QMTSAEGRK	9	Unmodified	_QMTSAEGRK_					0	0	0		ENSG00000198104|ENST00000641644|OR2T6	ENSG00000198104|ENST00000641644|OR2T6	ENSG00000198104|ENST00000641644|OR2T6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2523193359375	2	504.250566	1006.48658	1.2037	0.00060697	2.0671	0.0010423	3.2708	0.0016493	504.2518167989913	22.78	0.31909	22.78	22.671	22.99	0					18	6	4	0	0	0	0.023928	1	7637	7637		115.49	14.241	1	5962200			31255	7530	21572	21644	31649	31649					-0.01640548473687886
QMVKAVFQK	9	Unmodified	_QMVKAVFQK_					0	0	0			REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8090209960938	2	539.807519	1077.60049	3.4505	0.0018626	-0.36235	-0.0001956	3.0882	0.001667	539.8072097592079	12.413	0.18305	12.413	12.343	12.526	0					8	5	3	0	0	0	0.2873	1	2637	2637		51.335	0	1	551890	+		31256	17316	21573	21645	31650	31650					0.064789663592137
QMVNRIVDSA	10	Unmodified	_QMVNRIVDSA_					0	0	0		RCL1|p.A205V|1|0.22|ENSG00000120158|chr9:4841261-4841261|C/T|missense_variant	RCL1|p.A205V|1|0.22|ENSG00000120158|chr9:4841261-4841261|C/T|missense_variant	RCL1|p.A205V|1|0.22|ENSG00000120158|chr9:4841261-4841261|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.7930908203125	2	566.792598	1131.57064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.25	1	34.25	33.75	34.75	0								0	0	0	0.24422	1	13110	13110		58.782	2.0609	1				31257	12012	21574	21646	31651	31651					0.01011982623208496
QMVRNFRKP	9	Unmodified	_QMVRNFRKP_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.3267822265625	2	588.326942	1174.63933	0.15104	8.8862E-05	-0.29145	-0.00017147	-0.14041	-8.2606E-05	588.3271001550727	19.075	0.2109	19.075	18.913	19.124	0					10	5	3	0	0	0	0.078509	1	5698	5698		79.451	6.5718	1	732360			31258	6843	21575	21647	31652	31652					0.058996917135800686
QMYYKAKQ	8	Oxidation (M)	_QM(Oxidation (M))YYKAKQ_		QM(1)YYKAKQ		QM(50)YYKAKQ	0	0	1			REV__CCDC168|p.D4150Y|1|0.3|ENSG00000175820|chr13:102738249-102738249|C/A|missense_variant	REV__CCDC168|p.D4150Y|1|0.3|ENSG00000175820|chr13:102738249-102738249|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.265869140625	2	538.265684	1074.51682	0.29768	0.00016023	-0.085802	-4.6184E-05	0.21188	0.00011405	538.2656883648974	19.953	0.11764	19.953	19.894	20.011	0					4	2	2	0	0	0	0.59411	1	6405	6405		50.025	7.6284	1	189920	+		31259	12359	21576	21648	31653	31653		480			-0.017461898085230132
QNALCLLIK	9	Unmodified	_QNALCLLIK_					0	0	0			REV__TBC1D24|p.V114M|1|0.53|ENSG00000162065|chr16:2496488-2496488|G/A|missense_variant	REV__TBC1D24|p.V114M|1|0.53|ENSG00000162065|chr16:2496488-2496488|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3038635253906	2	508.30207	1014.58959	2.9764	0.0015129	1.9162	0.00097399	4.8925	0.0024869	508.302516436095	14.432	0.16668	14.432	14.324	14.491	0					11	3	4	0	0	0	0.27249	1	3577	3577		45.952	0	1	1136700	+		31260	15798	21577	21649	31654	31654					0.08287563984924873
QNANQTKLA	9	Unmodified	_QNANQTKLA_					0	0	0			REV__NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant	REV__NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.26348876953125	2	494.26453	986.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.141	1	23.141	22.641	23.641	0								0	0	0	0.24724	1	6911	6911		44.117	0	1		+		31261	16811	21578	21650	31655	31655					0.020710977780254325
QNARAHLI	8	Unmodified	_QNARAHLI_					0	0	0		SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.76580810546875	2	461.764501	921.514448	0.82	0.00037865	1.5895	0.00073397	2.4095	0.0011126	461.765143522645	41.118	0.2664	41.118	41.016	41.283	0					10	6	2	0	0	0	0.67475	1	16377	16377		37.028	5.0736	1	183590			31262	7539	21579	21651	31656	31656					0.050551425686990115
QNARSTNSL	9	Unmodified	_QNARSTNSL_					0	0	0		THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|6|1|sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|6|1|sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|6|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7551574707031	2	495.751787	989.489021	0.73049	0.00036214	2.7308	0.0013538	3.4613	0.001716	495.7539733472492	29.136	0.37417	29.136	28.96	29.334	0					30	8	5	0	0	0	0.055856	1	10733	10733		93.195	21.318	1	1614200			31263	22528	21580	21652	31657	31657					-0.006143767443973047
QNARSTNSL	9	Unmodified	_QNARSTNSL_					0	0	0		THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|6|1|sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|6|1|sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|6|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7551574707031	2	495.751787	989.489021	2.8479	0.0014119	2.5581	0.0012682	5.406	0.00268	495.7531473041151	29.034	0.31311	29.034	28.877	29.19	0					11	6	2	0	0	0	0.087861	1	10598	10598		82.241	7.9855	1	2594800			31264	22528	21580	21652	31658	31658					-0.006143767443973047
QNDIHHKVL	9	Unmodified	_QNDIHHKVL_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.30126953125	2	552.301447	1102.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.951	1	23.951	23.451	24.451	0								0	0	0	0.22284	1	8194	8194		47.657	1.7054	1				31265	4285	21581	21653	31659	31659					0.04115065940391105
QNEFSNGIQ	9	Unmodified	_QNEFSNGIQ_					0	0	0			REV__ENST00000495736.1_1_7:129986419-130007427:+|nuORF	REV__ENST00000495736.1_1_7:129986419-130007427:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7418212890625	2	518.738345	1035.46214	3.3481	0.0017368	3.2081	0.0016641	6.5561	0.0034009	518.7401545296179	14.282	0.11903	14.282	14.222	14.341	0					6	2	3	0	0	0	0.12239	1	3530	3530		74.255	5.4682	1	332290	+		31266	12625	21582	21654	31660	31660					-0.05417485355565077
QNEKLRRAD	9	Unmodified	_QNEKLRRAD_					0	0	0			REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.310546875	2	565.307261	1128.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.845	1	41.845	41.345	42.345	0								0	0	0	0.19847	1	16447	16447		51.193	3.5354	1		+		31267	13779	21583	21655	31661	31661					0.0408126296372302
QNEVNNGATLE	11	Unmodified	_QNEVNNGATLE_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.780517578125	2	594.778199	1187.54184	3.1708	0.0018859	0.72027	0.0004284	3.8911	0.0023143	594.7787355070204	24.748	0.4484	24.748	24.547	24.996	0					18	9	3	0	0	0	0.1937	1	8587	8587		75.043	8.0814	1	1857100	+		31268	15164	21584	21656	31662	31662					-0.044424634722190603
QNEYEIYD	8	Unmodified	_QNEYEIYD_					0	0	0		tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1	tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1	tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2254638671875	2	537.224736	1072.43492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.796	1	12.796	12.296	13.296	0								0	0	0	1.7419	1	2813	2813		42.474	5.3154	1				31269	22984	21585	21657	31663	31663					-0.09840013686607563
QNFGEMPQYIE	11	Unmodified	_QNFGEMPQYIE_					0	0	0			REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	678.802001953125	2	678.300452	1354.58635	-0.85683	-0.00058119	1.0231	0.00069395	0.16624	0.00011276	678.301313780646	17.68	0.075609	17.68	17.626	17.701	0					4	2	2	0	0	0	0.80429	1	4478	4478		14.137	1.3254	1	66278	+		31270	21793	21586	21658	31664	31664					-0.07675775650409378
QNFGEMPQYIE	11	Unmodified	_QNFGEMPQYIE_					0	0	0			REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	678.3004150390625	2	678.300452	1354.58635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.773	1	17.773	17.273	18.273	0								0	0	0	0.45674	1	4502	4502		22.58	0	1		+		31271	21793	21586	21658	31665	31665					-0.07675775650409378
QNFLKSASLV	10	Unmodified	_QNFLKSASLV_					0	0	0		ENST00000609439.2_2_7:45847154-45848297:+|nuORF	ENST00000609439.2_2_7:45847154-45848297:+|nuORF	ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8211669921875	2	553.813856	1105.61316	3.6107	0.0019997	-1.2045	-0.00066709	2.4062	0.0013326	553.812046842254	32.736	0.45652	32.736	32.59	33.046	0					34	9	5	0	0	0	0.46215	1	12388	12388		49.442	3.4896	1	1313600			31272	11101	21587	21659	31666	31666					0.06457701023077789
QNGMSTLSSQ	10	Unmodified	_QNGMSTLSSQ_					0	0	0		nc|ENSG00000128573|O15409-8|FOXP2;nc|ENSG00000128573|O15409-5|FOXP2;ENST00000459666.5_1_7:114066566-114268765:+|nuORF;nc|ENSG00000128573|O15409-7|FOXP2;nc|ENSG00000128573|O15409-6|FOXP2;ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2	nc|ENSG00000128573|O15409-8|FOXP2	nc|ENSG00000128573|O15409-8|FOXP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7366333007812	2	526.737488	1051.46042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.059	1	24.059	23.559	24.559	0								0	0	0	0.3598	1	8372	8372		41.427	0.64845	1				31273	3548	21588	21660	31667	31667					-0.06324862435826617
QNGSWIRI	8	Unmodified	_QNGSWIRI_					0	0	0			REV__nc|ENSG821|P63135|ERVK-7_pol	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2643127441406	2	487.264333	972.514114	0.81261	0.00039596	-0.091134	-4.4406E-05	0.72148	0.00035155	487.26418064193956	16.089	0.16895	16.089	15.98	16.149	0					6	3	2	0	0	0	0.70598	1	4399	4399		16.473	0	1	418210	+		31274	21269	21589	21661	31668	31668					0.026757228488463625
QNHFPVDTYEY	11	Unmodified	_QNHFPVDTYEY_					0	0	0			REV__ENSG00000105088|ENST00000264833|OLFM2	REV__ENSG00000105088|ENST00000264833|OLFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	706.8113403320312	2	706.809499	1411.60444	2.2037	0.0015576	0.15412	0.00010893	2.3578	0.0016665	706.809727425292	19.816	0.26897	19.816	19.607	19.876	0					11	5	3	0	0	0	0.47622	1	6205	6205		45.972	20.846	1	1303100	+		31275	13752	21590	21662	31669	31669					-0.08489317404018948
QNHINENE	8	Unmodified	_QNHINENE_					0	0	0			REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF;REV__BIN2|p.T500Hfs*24|1|0.33|ENSG00000110934|chr12:51291608-51291609|-/G|frameshift_variant	REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.21881103515625	2	499.22032	996.426087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.01	1	31.01	30.51	31.51	0								0	0	0	1.7419	1	10629	10629		42.396	3.1433	1		+		31276	19823;12287	21591	21663	31670	31670					-0.07226942532429348
QNHIREPH	8	Unmodified	_QNHIREPH_					0	0	0			REV__ENST00000477859.1_1_7:20406589-20418951:+|nuORF	REV__ENST00000477859.1_1_7:20406589-20418951:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7645263671875	2	515.762489	1029.51043	3.2631	0.001683	-0.52228	-0.00026937	2.7408	0.0014136	515.7622798758209	38.013	0.6103	38.013	37.869	38.48	0					34	13	4	0	0	0	0.52345	1	14895	14895		57.811	0	1	3028000	+		31277	13800	21592	21664	31671	31671					-0.0031494692502747057
QNHSGRFV	8	Unmodified	_QNHSGRFV_					0	0	0		ENSG00000173372|ENST00000374642|C1QA	ENSG00000173372|ENST00000374642|C1QA	ENSG00000173372|ENST00000374642|C1QA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7375183105469	2	472.738483	943.462413	-0.3468	-0.00016394	-1.5689	-0.00074168	-1.9157	-0.00090562	472.7375268721448	23.332	0.12298	23.332	23.249	23.372	0					5	3	2	0	0	0	0.65276	1	6744	6744		40.573	7.057	1	46140			31278	6425	21593	21665	31672	31672					-0.011580208450482132
QNIHIHLQ	8	Unmodified	_QNIHIHLQ_					0	0	0			REV__ENST00000377403.6_1_1:9324934-9325291:+|nuORF	REV__ENST00000377403.6_1_1:9324934-9325291:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7774963378906	2	501.777608	1001.54066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.592	1	24.592	24.092	25.092	0								0	0	0	1.7419	1	8625	8625		57.811	2.3071	1		+		31279	18732	21594	21666	31673	31673					0.03995411740174859
QNIKAGEK	8	Unmodified	_QNIKAGEK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.72802734375	2	444.250892	886.48723	-0.48697	-0.00021634	0.32704	0.00014529	-0.15994	-7.1053E-05	444.25111756912514	21.728	0.14661	21.728	21.629	21.776	0					5	3	2	0	0	0	0.46905	1	6320	6320		63.306	4.5243	1	213760			31280	1272	21595	21667	31674	31674					0.03944614237661881
QNIKEQLLI	9	Unmodified	_QNIKEQLLI_					0	0	0		tr|U7SYR9|U7SYR9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00893PE=4SV=1	tr|U7SYR9|U7SYR9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00893PE=4SV=1	tr|U7SYR9|U7SYR9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00893PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8298950195312	2	549.829506	1097.64446	1.1556	0.0006354	-0.29517	-0.0001623	0.86046	0.0004731	549.8292987646045	34.988	0.31088	34.988	34.89	35.201	0					24	9	4	0	0	0	0.03984	1	12406	12406		99.375	6.1795	1	1070000			31281	22879	21596	21668	31675	31675					0.0995427405719056
QNIQRTIAT	9	Unmodified	_QNIQRTIAT_					0	0	0		HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant;nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant	HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7957153320312	2	522.793455	1043.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.153	1	22.153	21.653	22.653	0								0	0	0	0.2591	1	7153	7153		42.396	1.618	1				31282	930	21597	21669	31676	31676					0.05231359703475391
QNKEKDTVLG	10	Unmodified	_QNKEKDTVLG_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant;GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.30419921875	2	566.303852	1130.59315	0.1326	7.5089E-05	0.49196	0.0002786	0.62455	0.00035369	566.3042060635556	18.206	0.089136	18.206	18.15	18.239	0					5	3	2	0	0	0	0.4287	1	4720	4720		53.089	6.6322	1	102510			31283	6416	21598	21670	31677	31677					0.033079052924676944
QNKIKEKN	8	Unmodified	_QNKIKEKN_					0	0	0			REV__ENSG00000144395|ENST00000389175|CCDC150	REV__ENSG00000144395|ENST00000389175|CCDC150	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29052734375	2	501.290548	1000.56654	1.1197	0.00056129	-0.68072	-0.00034124	0.43898	0.00022006	501.2901255900728	49.309	1.2755	49.309	49.113	50.389	0					158	63	3	0	0	0	0.71588	1	19716	19716		29.15	7.1897	1	643040	+		31284	15230	21599	21671	31678	31678					0.06628261191792717
QNKKGSLL	8	Unmodified	_QNKKGSLL_					0	0	0			REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.268310546875	2	444.269084	886.523616	0.78224	0.00034752	-3.8995	-0.0017324	-3.1173	-0.0013849	444.2672461840719	29.352	0.309	29.352	29.291	29.6	0					11	6	3	0	0	0	0.28427	1	10756	10756		87.754	8.0417	1	566950	+		31285	16996	21600	21672	31679	31679					0.07581491134385487
QNKKKLAN	8	Unmodified	_QNKKKLAN_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.287353515625	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.472	1	21.472	20.972	21.972	0								0	0	0	1.7419	1	6995	6995		60.294	1.512	1		+		31286	14163	21601	21673	31680	31680					0.08748582399982752
QNKKVVKEQI	10	Unmodified	_QNKKVVKEQI_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.2469482421875	3	405.24695	1212.71902	-0.10996	-4.4563E-05	0.1868	7.5699E-05	0.076832	3.1136E-05	405.24691113900735	17.601	0.17351	17.601	17.533	17.706	0					6	4	2	0	0	0	0.54861	1	4430	4430		40.058	2.55	1	158850	+		31287	15046	21602	21674	31681	31681					0.12117036868562536
QNKLPASK	8	Unmodified	_QNKLPASK_					0	0	0		ENST00000555019.5_2_14:94442850-94442979:-|nuORF	ENST00000555019.5_2_14:94442850-94442979:-|nuORF	ENST00000555019.5_2_14:94442850-94442979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2610168457031	2	443.261259	884.507966	-0.29106	-0.00012902	-0.27135	-0.00012028	-0.56241	-0.0002493	443.2611424735373	14.136	0.16841	14.136	14.086	14.255	0					16	7	3	0	0	0	0.32815	1	2859	2859		79.451	0	1	542710			31288	10653	21603	21675	31682	31682					0.0610920461731439
QNKNIQEIL	9	Unmodified	_QNKNIQEIL_					0	0	0			REV__FNIP2|p.M738Wfs*5|1|0.27|ENSG00000052795|chr4:158868842-158868842|A/-|frameshift_variant	REV__FNIP2|p.M738Wfs*5|1|0.27|ENSG00000052795|chr4:158868842-158868842|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3090209960938	2	550.308938	1098.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.933	1	32.933	32.433	33.433	0								0	0	0	0.024201	1	12558	12558		98.629	8.2596	1		+		31289	13041	21604	21676	31683	31683					0.05796513017708094
QNKTINFKT	9	Unmodified	_QNKTINFKT_					0	0	0			REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.3048706054688	2	547.303655	1092.59276	1.6784	0.00091861	-1.7441	-0.00095455	-0.065667	-3.594E-05	547.3030090888639	26.116	0.11168	26.116	26.061	26.173	0					6	4	2	0	0	0	0.12834	1	7892	7892		72.879	18.103	1	64921	+		31290	22081	21605	21677	31684	31684					0.050165303632638825
QNKTINFKT	9	Unmodified	_QNKTINFKT_					0	0	0			REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.3041381835938	2	547.303655	1092.59276	1.8541	0.0010147	-1.1535	-0.00063131	0.70058	0.00038343	547.3029221112886	26.371	0.26057	26.371	26.287	26.547	0					14	6	3	0	0	0	0.14578	1	9082	9082		68.846	7.1549	1	576020	+		31291	22081	21605	21677	31685	31685					0.050165303632638825
QNKTQLLASK	10	Unmodified	_QNKTQLLASK_					0	0	0			REV__ENSG00000083535|ENST00000326291|PIBF1	REV__ENSG00000083535|ENST00000326291|PIBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.8304443359375	2	565.830037	1129.64552	0.20645	0.00011681	0.82705	0.00046797	1.0335	0.00058478	565.8303865836909	11.061	0.085007	11.061	10.979	11.064	0					5	3	2	0	0	0	0.61238	1	2174	2174		32.751	2.4328	1	96901	+		31292	13334	21606	21678	31686	31686					0.0858848842608495
QNKVIENFI	9	Unmodified	_QNKVIENFI_					0	0	0			REV__ITGB6|p.R222I|1|0.37|ENSG00000115221|chr2:160174068-160174068|C/A|missense_variant	REV__ITGB6|p.R222I|1|0.37|ENSG00000115221|chr2:160174068-160174068|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.8074951171875	2	552.806031	1103.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.942	1	21.942	21.442	22.442	0								0	0	0	0.10319	1	7353	7353		54.776	0	1		+		31293	20769	21607	21679	31687	31687					0.04985414506040797
QNKWSTKK	8	Unmodified	_QNKWSTKK_					0	0	0			REV__nc|ENSG00000121236|Q9C030|TRIM6	REV__nc|ENSG00000121236|Q9C030|TRIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.28704833984375	2	510.285266	1018.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.515	1	19.515	19.015	20.015	0								0	0	0	1.7419	1	6182	6182		51.335	0	1		+		31294	14306	21608	21680	31688	31688					0.047442785373846164
QNKYIGESL	9	Unmodified	_QNKYIGESL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47666536-47687014:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2752075195312	2	526.274564	1050.53457	1.7659	0.00092934	-0.36127	-0.00019013	1.4046	0.00073921	526.2744216828013	40.885	0.28308	40.885	40.756	41.039	0					15	7	3	0	0	0	0.2873	1	16086	16086		51.335	5.3632	1	160350			31295	5357	21609	21681	31689	31689					0.011328487180207958
QNLDITFLR	9	Unmodified	_QNLDITFLR_					0	0	0			REV__nc|ENSG00000122025|P36888-2|FLT3	REV__nc|ENSG00000122025|P36888-2|FLT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.8766174316406	3	373.876746	1118.60841	0.74933	0.00028016	-0.59307	-0.00022174	0.15626	5.8422E-05	373.876375708161	27.145	0.67609	27.145	27.036	27.712	0					36	13	5	0	0	0	0.25716	1	9670	9670		61.691	1.7605	1	4153200	+		31296	14325	21610	21682	31690	31690					0.05384816880314247
QNLFKFCL	8	Carbamidomethyl (C)	_QNLFKFC(Carbamidomethyl (C))L_	QNLFKFC(1)L		QNLFKFC(41)L		0	1	0		UGGT1|p.D546Mfs*27|1|0.03|ENSG00000136731|chr2:128138768-128138769|-/AT|frameshift_variant;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1	UGGT1|p.D546Mfs*27|1|0.03|ENSG00000136731|chr2:128138768-128138769|-/AT|frameshift_variant	UGGT1|p.D546Mfs*27|1|0.03|ENSG00000136731|chr2:128138768-128138769|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.18878173828125	3	357.188155	1068.54264	1.3485	0.00048166	0.57224	0.0002044	1.9207	0.00068606	357.1883779316719	21.832	0.31614	21.832	21.721	22.037	0					13	6	4	0	0	0	0.65276	1	7180	7180		40.573	8.6178	1	2695200			31297	4103	21611	21683	31691	31691	178				0.011107044337677507
QNLIPLREE	9	Unmodified	_QNLIPLREE_					0	0	0			REV__ENST00000417868.1_1_1:153825491-153825668:-|nuORF	REV__ENST00000417868.1_1_1:153825491-153825668:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.3124389648438	2	556.308938	1110.60332	1.6846	0.00093715	2.6133	0.0014538	4.2979	0.0023909	556.8117201312893	32.127	0.21737	32.127	32.048	32.265	0					10	6	2	0	0	0	0.58342	1	11132	11132		30.504	10.022	1	71008	+		31298	15366	21612	21684	31692	31692					0.0524451301771478
QNLLHGYAF	9	Unmodified	_QNLLHGYAF_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.770263671875	2	531.771991	1061.52943	-1.2536	-0.00066665	-1.6665	-0.00088618	-2.9201	-0.0015528	531.7710751596428	30.327	0.22535	30.327	30.243	30.468	0					10	5	3	0	0	0	0.55282	1	10323	10323		26.796	1.222	1	221070			31299	3370	21613	21685	31693	31693					0.0011258964602802735
QNLLKKTK	8	Unmodified	_QNLLKKTK_					0	0	0		ENST00000438666.6_1_13:36886473-36886551:-|nuORF	ENST00000438666.6_1_13:36886473-36886551:-|nuORF	ENST00000438666.6_1_13:36886473-36886551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.8138732910156	2	486.813659	971.612765	-0.045522	-2.2161E-05	0.76259	0.00037124	0.71707	0.00034908	486.8139212332186	23.726	0.17968	23.726	23.655	23.834	0					9	6	2	0	0	0	0.46905	1	6911	6911		63.306	4.5243	1	184880			31300	9552	21614	21686	31694	31694					0.12582326093900065
QNLLNQAASQP	11	Unmodified	_QNLLNQAASQP_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.30712890625	2	592.306926	1182.5993	-0.53714	-0.00031815	1.1818	0.00069999	0.64466	0.00038184	592.307527700583	17.66	0.14291	17.66	17.598	17.741	0					7	4	2	0	0	0	0.22894	1	4465	4465		70.816	17.727	1	377790			31301	7593	21615	21687	31695	31695					0.015304235239909758
QNLLNQAASQP	11	Unmodified	_QNLLNQAASQP_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.30712890625	2	592.306926	1182.5993	0.51276	0.00030371	0.22254	0.00013181	0.73529	0.00043552	592.3069617053129	17.726	0.11178	17.726	17.64	17.751	0					4	2	2	0	0	0	0.38515	1	4480	4480		53.089	1.8963	1	185000			31302	7593	21615	21687	31696	31696					0.015304235239909758
QNLLRQADL	9	Unmodified	_QNLLRQADL_					0	0	0		nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF;DNAH1|p.K1480Sfs*13|1|0.07|ENSG00000114841|chr3:52359941-52359941|G/-|frameshift_variant	nc|ENSG00000114841|Q9P2D7-6|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.802490234375	2	535.80128	1069.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.496	1	11.496	10.996	11.996	0								0	0	0	0.15451	1	2367	2367		58.782	3.2778	1				31303	2867	21616	21688	31697	31697					0.055996462205030184
QNLVLQVL	8	Unmodified	_QNLVLQVL_					0	0	0		ENST00000265748.6_2_7:36438777-36438891:+|nuORF;ANLN|p.K85Lfs*45|1|0.05|ENSG00000011426|chr7:36399157-36399158|-/CTTGAGGG|frameshift_variant	ENST00000265748.6_2_7:36438777-36438891:+|nuORF	ENST00000265748.6_2_7:36438777-36438891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7864990234375	2	463.78711	925.559667	-0.38666	-0.00017933	0.21491	9.9671E-05	-0.17176	-7.9659E-05	463.78707457688836	22.915	0.26888	22.915	22.825	23.094	0					8	6	2	0	0	0	0.59411	1	6902	6902		50.025	7.1603	1	169260			31304	164	21617	21689	31698	31698					0.09390948311227021
QNLVQPIQE	9	Unmodified	_QNLVQPIQE_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7889404296875	2	534.787838	1067.56112	-0.58463	-0.00031265	1.5283	0.00081731	0.94365	0.00050465	534.7889235187057	21.354	0.13853	21.354	21.254	21.393	0					6	4	2	0	0	0	0.33044	1	6128	6128		47.657	5.2612	1	52457	+		31305	17522	21618	21690	31699	31699					0.030045376093539744
QNMAVALQ	8	Unmodified	_QNMAVALQ_					0	0	0		ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7254333496094	2	437.726195	873.437837	0.24901	0.000109	-0.79469	-0.00034786	-0.54568	-0.00023886	437.725969256616	21.667	0.2985	21.667	21.484	21.782	0					16	10	2	0	0	0	0.65276	1	5993	5993		40.573	1.7665	1	79076			31306	4576	21619	21691	31700	31700					-0.003944170427871541
QNNANGNLIQ	10	Unmodified	_QNNANGNLIQ_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2724609375	2	543.270344	1084.52613	2.0153	0.0010948	1.7423	0.00094652	3.7575	0.0020414	543.2714657816642	21.916	0.31152	21.916	21.759	22.07	0					12	6	4	0	0	0	0.37692	1	7354	7354		58.782	0.55203	1	1017900			31307	11686	21620	21692	31701	31701					-0.0127470519862527
QNNLVRLT	8	Unmodified	_QNNLVRLT_					0	0	0		CCDC65|p.K320N|1|0.26|ENSG00000139537|chr12:48918837-48918837|G/T|missense_variant	CCDC65|p.K320N|1|0.26|ENSG00000139537|chr12:48918837-48918837|G/T|missense_variant	CCDC65|p.K320N|1|0.26|ENSG00000139537|chr12:48918837-48918837|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.27655029296875	2	479.277441	956.540328	0.48125	0.00023065	-1.7156	-0.00082227	-1.2344	-0.00059162	479.2764905909578	21.238	0.1521	21.238	21.187	21.34	0					5	3	2	0	0	0	0.76283	1	6734	6734		25.45	2.4077	1	59991			31308	410	21621	21693	31702	31702					0.06031992020314192
QNNLYVQPY	9	Unmodified	_QNNLYVQPY_					0	0	0		nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7855224609375	2	569.780013	1137.54547	1.6245	0.00092559	1.911	0.0010888	3.5355	0.0020144	569.7814251274553	36.871	0.95621	36.871	36.562	37.518	0					31	19	3	0	0	0	0.25109	1	14262	14262		55.504	11.127	1	1529800			31309	6072	21622	21694	31703	31703					-0.017797489077111095
QNPAEGLQTL	10	Unmodified	_QNPAEGLQTL_					0	0	0		KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2797241210938	2	535.77747	1069.54039	1.9052	0.0010208	1.9924	0.0010675	3.8976	0.0020883	535.7786507924344	35.526	0.77414	35.526	34.913	35.687	0					29	15	4	0	0	0	0.56931	1	13782	13782		37.812	1.3648	1	2331100			31310	1282	21623	21695	31704	31704					0.008399472296559907
QNPGFLHL	8	Unmodified	_QNPGFLHL_					0	0	0			REV__ENSG00000105223|ENST00000409735|PLD3	REV__ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2498474121094	2	463.248152	924.481751	4.1448	0.0019201	-0.82251	-0.00038103	3.3223	0.001539	463.2478920908052	36.11	0.25921	36.11	36.031	36.29	0					21	11	3	0	0	0	0.55361	1	12226	12226		54.765	54.765	1	231640	+		31311	13761	21624	21696	31705	31705					0.016489354458371963
QNPIVQYGTQ	10	Unmodified	_QNPIVQYGTQ_					0	0	0			REV__nc|ENSG00000048991|Q15032-4|R3HDM1	REV__nc|ENSG00000048991|Q15032-4|R3HDM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.1961364746094	3	383.196256	1146.56694	-0.55621	-0.00021314	-0.2946	-0.00011289	-0.85081	-0.00032603	383.19615800495626	12.708	0.2299	12.708	12.625	12.855	0					7	5	2	0	0	0	0.61187	1	2778	2778		30.569	0	1	242840	+		31312	20927	21625	21697	31706	31706					-0.00048363879000135057
QNPPPSSPK	9	Unmodified	_QNPPPSSPK_					0	0	0		MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant;ENSG00000138347|ENST00000358913|MYPN;nc|ENSG00000138347|Q86TC9-2|MYPN	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2478942871094	2	476.248349	950.482145	-0.41485	-0.00019757	-0.14469	-6.8906E-05	-0.55953	-0.00026648	476.2482066386213	26.3	0.65918	26.3	25.901	26.56	0					25	13	3	0	0	0	0.28897	1	9382	9382		51.193	1.7511	1	460110			31313	4247	21626	21698	31707	31707					0.004923103750456903
QNQKQVIKY	9	Unmodified	_QNQKQVIKY_					0	0	0			REV__nc|ENSG00000136048|Q8N682-2|DRAM1	REV__nc|ENSG00000136048|Q8N682-2|DRAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.8248901367188	2	574.824755	1147.63496	0.05966	3.4294E-05	-0.014679	-8.4381E-06	0.044981	2.5856E-05	574.8247597257257	28.8	0.088303	28.8	28.714	28.803	0					5	3	2	0	0	0	0.43426	1	9318	9318		38.806	2.3594	1	51836	+		31314	14842	21627	21699	31708	31708					0.0670450577167685
QNQQQIQQ	8	Unmodified	_QNQQQIQQ_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7481994628906	2	507.751787	1013.48902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.789	1	20.789	20.289	21.289	0								0	0	0	1.7419	1	5911	5911		60.294	5.5176	1				31315	1949	21628	21700	31709	31709					-0.017183767443725628
QNQVHGQLE	9	Unmodified	_QNQVHGQLE_					0	0	0			REV__ENST00000551203.1_1_2:74348047-74348155:+|nuORF	REV__ENST00000551203.1_1_2:74348047-74348155:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.761474609375	2	526.759612	1051.50467	1.3146	0.00069249	1.2301	0.00064797	2.5447	0.0013405	526.7602804666554	21.126	0.61294	21.126	20.832	21.445	0					31	18	2	0	0	0	0.5879	1	5894	5894		23.042	1.3402	1	238790	+		31316	20201	21629	21701	31710	31710					-0.019020902273268803
QNRHSPDHP	9	Unmodified	_QNRHSPDHP_					0	0	0		ENST00000337672.7_2_11:57471512-57471608:-|nuORF	ENST00000337672.7_2_11:57471512-57471608:-|nuORF	ENST00000337672.7_2_11:57471512-57471608:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2572631835938	2	544.255028	1086.4955	1.9796	0.0010774	1.3058	0.00071069	3.2854	0.0017881	544.2553587926699	31.52	0.61075	31.52	31.157	31.768	0					18	12	3	0	0	0	0.33044	1	11801	11801		47.657	1.7054	1	515110			31317	8708	21630	21702	31711	31711					-0.044284387930019875
QNRRVKHK	8	Unmodified	_QNRRVKHK_					0	0	0		ENST00000507839.1_1_4:54965775-54968086:+|nuORF;ENSG00000169840|ENST00000302945|GSX1;ENSG00000180613|ENST00000326902|GSX2	ENST00000507839.1_1_4:54965775-54968086:+|nuORF	ENST00000507839.1_1_4:54965775-54968086:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.3248291015625	2	533.323048	1064.63154	3.3944	0.0018103	-0.093772	-5.0011E-05	3.3007	0.0017603	533.3230098143089	18.198	0.46061	18.198	17.994	18.454	0					21	9	4	0	0	0	0.30437	1	5411	5411		71.378	71.378	1	4467300			31318	6187	21631	21703	31712	31712					0.10181300508315871
QNRSRVHL	8	Unmodified	_QNRSRVHL_					0	0	0			REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.1940612792969	3	337.19318	1008.55771	3.0165	0.0010172	-2.2966	-0.00077439	0.71996	0.00024276	337.1929834241176	27.788	0.41402	27.788	27.678	28.092	0					18	8	4	0	0	0	0.69548	1	10000	10000		34.173	2.2177	1	1153200	+		31319	17411	21632	21704	31713	31713					0.05377332345983632
QNSEHHGQ	8	Unmodified	_QNSEHHGQ_					0	0	0		ENSG00000188033|ENST00000311437|ZNF490	ENSG00000188033|ENST00000311437|ZNF490	ENSG00000188033|ENST00000311437|ZNF490	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.69891357421875	2	468.699555	935.384556	0.028867	1.353E-05	-0.92406	-0.00043311	-0.89519	-0.00041958	468.69910518250475	23.532	0.29779	23.532	23.335	23.633	0					13	10	2	0	0	0	0.77246	1	6847	6847		24.203	1.1603	1	62455			31320	7230	21633	21705	31714	31714					-0.08572078501083524
QNSGLLGKLE	10	Unmodified	_QNSGLLGKLE_					0	0	0		KNDC1|p.R1337Q|1|0.29|ENSG00000171798|chr10:133211523-133211523|G/A|missense_variant	KNDC1|p.R1337Q|1|0.29|ENSG00000171798|chr10:133211523-133211523|G/A|missense_variant	KNDC1|p.R1337Q|1|0.29|ENSG00000171798|chr10:133211523-133211523|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7928466796875	2	529.795663	1057.57677	0.017621	9.3354E-06	0.066204	3.5074E-05	0.083824	4.441E-05	529.7956480925544	24.021	0.25109	24.021	23.906	24.157	0					19	8	3	0	0	0	0.38179	1	7278	7278		58.246	0.016323	1	715220			31321	11263	21634	21706	31715	31715					0.050288241264070166
QNTNQIKAF	9	Unmodified	_QNTNQIKAF_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2822875976562	2	532.28018	1062.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.16	1	20.16	19.66	20.66	0								0	0	0	0.36056	1	5350	5350		22.58	0.61977	1		+		31322	12992	21635	21707	31716	31716					0.017036708121167976
QNVAQISV	8	Unmodified	_QNVAQISV_					0	0	0			REV__ENST00000237841.5_1_12:3949907-3950609:+|nuORF	REV__ENST00000237841.5_1_12:3949907-3950609:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.73736572265625	2	429.737617	857.460681	-0.51201	-0.00022003	0.12962	5.5704E-05	-0.38239	-0.00016433	429.73762709686537	17.458	0.29935	17.458	17.268	17.567	0					13	6	3	0	0	0	0.58597	1	5155	5155		51.335	0	1	497580	+		31323	15968	21636	21708	31717	31717					0.02624925346344753
QNVHVFGVEG	10	Unmodified	_QNVHVFGVEG_					0	0	0		nc|ENSG00000144115|Q86YJ6-5|THNSL2;nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2;ENSG00000144115|ENST00000674334|THNSL2;nc|ENSG00000144115|Q86YJ6-4|THNSL2	nc|ENSG00000144115|Q86YJ6-5|THNSL2	nc|ENSG00000144115|Q86YJ6-5|THNSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2725219726562	2	543.272355	1084.53016	2.0093	0.0010916	-1.605	-0.00087193	0.40432	0.00021966	543.2714800682832	21.928	0.3185	21.928	21.871	22.19	0					10	6	3	0	0	0	0.37692	1	7229	7229		58.782	6.6148	1	938990			31324	4601	21637	21709	31718	31718					-0.008726157049068206
QNVLSIIQ	8	Unmodified	_QNVLSIIQ_					0	0	0			REV__ENSG00000008083|ENST00000341776|JARID2	REV__ENSG00000008083|ENST00000341776|JARID2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7692565917969	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.046	1	30.046	29.546	30.546	0								0	0	0	1.7419	1	11191	11191		38.806	0	1		+		31325	12875	21638	21710	31719	31719					0.06306071414530834
QNVTSFLIG	9	Unmodified	_QNVTSFLIG_					0	0	0		nc|ENSG00000244694|Q6ZW05-4|PTCHD4;PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.76654052734375	2	489.766374	977.518196	-1.254	-0.00061415	0.76601	0.00037517	-0.48796	-0.00023899	489.76667988010536	34.452	0.19434	34.452	34.379	34.573	0					14	8	2	0	0	0	0.22377	1	11606	11606		58.782	8.7484	1	151170			31326	7969	21639	21711	31720	31720					0.028537675519146433
QNVVAFDVY	9	Unmodified	_QNVVAFDVY_					0	0	0		ENSG00000185915|ENST00000379499|KLHL34	ENSG00000185915|ENST00000379499|KLHL34	ENSG00000185915|ENST00000379499|KLHL34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7633666992188	2	527.763832	1053.51311	2.1368	0.0011277	-1.2378	-0.00065329	0.89893	0.00047442	527.7633925877548	33.022	0.64699	33.022	32.904	33.551	0					23	17	2	0	0	0	0.05357	1	12170	12170		94.006	10.359	1	554740			31327	7112	21640	21712	31721	31721					-0.011505363107289668
QNVVAFDVY	9	Unmodified	_QNVVAFDVY_					0	0	0		ENSG00000185915|ENST00000379499|KLHL34	ENSG00000185915|ENST00000379499|KLHL34	ENSG00000185915|ENST00000379499|KLHL34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7642822265625	2	527.763832	1053.51311	1.753	0.00092518	-1.7474	-0.00092221	0.0056419	2.9776E-06	527.7632154029969	33.042	0.35869	33.042	32.875	33.233	0					11	8	2	0	0	0	0.47038	1	12610	12610		35.618	0.41757	1	482120			31328	7112	21640	21712	31722	31722					-0.011505363107289668
QNWEEFFENL	10	Unmodified	_QNWEEFFENL_					0	0	0		tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	678.3005981445312	2	678.298767	1354.58298	1.6692	0.0011322	0.83137	0.00056391	2.5006	0.0016961	678.2994784941975	17.685	0.076288	17.685	17.627	17.703	0					4	2	2	0	0	0	0.72769	1	4266	4266		17.468	0.75062	1	99011			31329	22636	21641	21713	31723	31723					-0.08012702432756669
QNYDVNQT	8	Unmodified	_QNYDVNQT_					0	0	0			REV__nc|ENSG809|P63128|ERVK-9_pol	REV__nc|ENSG809|P63128|ERVK-9_pol	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2171630859375	2	491.217246	980.419939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.862	1	18.862	18.362	19.362	0								0	0	0	1.7419	1	5005	5005		34.173	5.9183	1		+		31330	21267	21642	21714	31724	31724					-0.07105460763943938
QNYLRRGRE	9	Unmodified	_QNYLRRGRE_					0	0	0		nc|ENSG00000134109|Q92611-2|EDEM1;ENSG00000134109|ENST00000256497|EDEM1;EDEM1|p.S398I|1|0.43|ENSG00000134109|chr3:5205217-5205217|G/T|missense_variant	nc|ENSG00000134109|Q92611-2|EDEM1	nc|ENSG00000134109|Q92611-2|EDEM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.3190307617188	2	596.320703	1190.62685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.84	1	15.84	15.34	16.34	0								0	0	0	0.23445	1	3515	3515		45.972	3.7297	1				31331	3891	21643	21715	31725	31725					0.0391637157488276
QNYRIPPPQ	9	Unmodified	_QNYRIPPPQ_					0	0	0		ENST00000417201.3_1_9:125014204-125027038:-|nuORF	ENST00000417201.3_1_9:125014204-125027038:-|nuORF	ENST00000417201.3_1_9:125014204-125027038:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.2507934570312	2	556.795998	1111.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.644	1	14.644	14.144	15.144	0								0	0	0	0.28996	1	3048	3048		37.159	0.71236	1				31332	9372	21644	21716	31726	31726					0.026116635660855536
QPAAALQLEQ	10	Unmodified	_QPAAALQLEQ_					0	0	0			REV__ENSG00000006555|ENST00000371276|TTC22	REV__ENSG00000006555|ENST00000371276|TTC22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.788330078125	2	534.787838	1067.56112	1.0961	0.00058616	-0.14517	-7.7633E-05	0.9509	0.00050853	534.7876635164331	21.44	0.19895	21.44	21.343	21.542	0					6	4	2	0	0	0	0.64162	1	6228	6228		29.17	29.17	1	116040	+		31333	12855	21645	21717	31727	31727					0.03004537609331237
QPAENVNQY	9	Unmodified	_QPAENVNQY_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7466430664062	2	531.74617	1061.47779	1.9659	0.0010454	-0.89052	-0.00047353	1.0754	0.00057185	531.7456797696657	27.289	0.51305	27.289	27.14	27.653	0					19	12	2	0	0	0	0.063823	1	9496	9496		90.37	16.395	1	107790			31334	3687	21646	21718	31728	31728					-0.050491988385147124
QPAENVNQY	9	Unmodified	_QPAENVNQY_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7461547851562	2	531.74617	1061.47779	2.4108	0.0012819	-0.92325	-0.00049094	1.4876	0.000791	531.7453598523147	27.281	0.4255	27.281	27.169	27.594	0					23	10	3	0	0	0	0.1115	1	9515	9515		76.774	8.2894	1	243950			31335	3687	21646	21718	31729	31729					-0.050491988385147124
QPAENVNQY	9	Unmodified	_QPAENVNQY_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7470703125	2	531.74617	1061.47779	1.0141	0.00053923	-0.1567	-8.3327E-05	0.85737	0.0004559	531.7460787475297	27.282	0.56084	27.282	27.169	27.73	0					33	11	4	0	0	0	0.025517	2	9851	9851;10018		113.41	56.691	1	1168100			31336	3687	21646	21718	31730;31731	31730					-0.050491988385147124
QPAENVNQY	9	Unmodified	_QPAENVNQY_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.7473754882812	2	531.74617	1061.47779	1.9467	0.0010351	0.20638	0.00010974	2.1531	0.0011449	531.7462343339763	27.12	0.37377	27.12	26.988	27.361	0					17	9	2	0	0	0	0.19605	1	8817	8817		62.107	23.301	1	109830			31337	3687	21646	21718	31732	31732					-0.050491988385147124
QPAENVNQY	9	Unmodified	_QPAENVNQY_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.74658203125	2	531.74617	1061.47779	0.72218	0.00038402	0.059471	3.1624E-05	0.78166	0.00041564	531.7461480580217	27.259	0.5745	27.259	27.103	27.678	0					36	11	4	0	0	0	0.019882	2	9701	9701;9871		122.18	53.691	1	1010500			31338	3687	21646	21718	31733;31734	31733					-0.050491988385147124
QPAGPGGDAD	10	Unmodified	_QPAGPGGDAD_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.69012451171875	2	442.690864	883.367175	-1.1358	-0.00050279	0.56759	0.00025127	-0.56816	-0.00025152	442.69090330379254	14.673	0.080385	14.673	14.624	14.704	0					6	3	2	0	0	0	0.62235	1	3215	3215		31.53	1.0262	1	92834			31339	7340	21647	21719	31735	31735					-0.07917418826764333
QPAKRSIALGM	11	Oxidation (M)	_QPAKRSIALGM(Oxidation (M))_		QPAKRSIALGM(1)		QPAKRSIALGM(72)	0	0	1			REV__ENST00000295133.9_1_2:73483541-73483895:-|nuORF	REV__ENST00000295133.9_1_2:73483541-73483895:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.5582580566406	3	396.557019	1186.64923	3.1679	0.0012563	0.010417	4.131E-06	3.1783	0.0012604	396.5570265046355	36.252	0.66259	36.252	36.098	36.761	0					31	13	3	0	0	0	0.21827	1	14064	14064		72.096	12.165	1	990230	+		31340	18171	21648	21720	31736	31736		681			0.06336834928265489
QPAMQALALGP	11	Unmodified	_QPAMQALALGP_					0	0	0		nc|ENSG00000189348|A6NNH2|FAM90A27P	nc|ENSG00000189348|A6NNH2|FAM90A27P	nc|ENSG00000189348|A6NNH2|FAM90A27P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.796875	2	548.794609	1095.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.579	1	13.579	13.079	14.079	0								0	0	0	0.36993	1	3337	3337		42.396	8.2236	1				31341	11702	21649	21721	31737	31737					0.030700721169068856
QPANPTEEY	9	Unmodified	_QPANPTEEY_					0	0	0		ENSG00000152944|ENST00000282892|MED21	ENSG00000152944|ENST00000282892|MED21	ENSG00000152944|ENST00000282892|MED21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7327880859375	2	524.732729	1047.4509	1.8423	0.00096674	-0.64968	-0.00034091	1.1927	0.00062583	524.732178314544	29.009	0.21066	29.009	28.846	29.057	0					9	5	2	0	0	0	0.35021	1	10329	10329		45.972	1.5951	1	118310			31342	5027	21650	21722	31738	31738					-0.0709230744969318
QPAPCPLNY	9	Carbamidomethyl (C)	_QPAPC(Carbamidomethyl (C))PLNY_	QPAPC(1)PLNY		QPAPC(53)PLNY		0	1	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2495727539062	2	530.250034	1058.48552	2.3698	0.0012566	-1.7731	-0.00094016	0.59672	0.00031641	530.2490662169386	37.604	0.29236	37.604	37.423	37.716	0					15	8	2	0	0	0	0.26904	1	14230	14230		53.351	10.877	1	122340			31343	2235	21651	21723	31739	31739	91				-0.0413876284262642
QPAPGPQEPL	10	Unmodified	_QPAPGPQEPL_					0	0	0			REV__ENSG00000171872|ENST00000372299|KLF17	REV__ENSG00000171872|ENST00000372299|KLF17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2706298828125	2	517.269281	1032.52401	0.95687	0.00049496	0.1571	8.1263E-05	1.114	0.00057622	517.2694644268619	33.828	0.41001	33.828	33.618	34.028	0					10	7	2	0	0	0	0.38194	1	12969	12969		58.23	15.834	1	115970	+		31344	16439	21652	21724	31740	31740					0.009048660635471606
QPAPSSTSGSY	11	Unmodified	_QPAPSSTSGSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2432250976562	2	541.24346	1080.47237	1.8612	0.0010074	-1.1549	-0.00062509	0.70631	0.00038229	541.2427567088868	23.882	0.28958	23.882	23.751	24.041	0					9	6	2	0	0	0	0.66915	1	7947	7947		30.569	8.8831	1	56740			31345	1813	21653	21725	31741	31741					-0.0646492242099157
QPAPSSTSGSY	11	Unmodified	_QPAPSSTSGSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2435913085938	2	541.24346	1080.47237	1.3472	0.00072916	-0.23262	-0.0001259	1.1146	0.00060326	541.2433045486233	23.754	0.51818	23.754	23.612	24.13	0					18	10	2	0	0	0	0.21704	1	8249	8249		72.243	36.625	1	108600			31346	1813	21653	21725	31742	31742					-0.0646492242099157
QPAPVPSMEK	10	Unmodified	_QPAPVPSMEK_					0	0	0		SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2782592773438	2	542.278792	1082.54303	0.3071	0.00016653	-1.0644	-0.00057722	-0.75734	-0.00041069	542.2779629841073	41.171	0.15927	41.171	41.091	41.25	0					10	7	2	0	0	0	0.58189	1	15655	15655		36.447	0.82846	1	56818			31347	5420	21654	21726	31743	31743					0.005060793629809268
QPAQNATT	8	Unmodified	_QPAQNATT_					0	0	0		nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	nc|ENSG00000171346|P19012-2|KRT15	nc|ENSG00000171346|P19012-2|KRT15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.70318603515625	2	415.703774	829.392996	-0.78288	-0.00032545	-0.9731	-0.00040452	-1.756	-0.00072997	415.7032671538619	42.227	0.29933	42.227	42.1	42.399	0					26	15	2	0	0	0	0.77246	1	16001	16001		24.203	0	1	190980			31348	9888	21655	21727	31744	31744					-0.02852524584488947
QPAQYGYSDF	10	Unmodified	_QPAQYGYSDF_					0	0	0			REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1	REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.2554931640625	2	588.253828	1174.4931	3.1889	0.0018759	-0.21174	-0.00012456	2.9771	0.0017513	588.2539637252214	32.346	0.3706	32.346	32.186	32.557	0					18	7	4	0	0	0	0.49411	1	12201	12201		45.972	0.020292	1	575640	+		31349	13347	21656	21728	31745	31745					-0.08716332041331043
QPASQLIQR	9	Unmodified	_QPASQLIQR_					0	0	0			REV__ENST00000371021.4_1_10:99080110-99080479:+|nuORF	REV__ENST00000371021.4_1_10:99080110-99080479:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7987670898438	2	520.795998	1039.57744	3.3768	0.0017586	3.0678	0.0015977	6.4446	0.0033563	520.7976000691867	11.897	0.29438	11.897	11.797	12.091	0					12	8	2	0	0	0	0.48389	1	2415	2415		34.173	0	1	872780	+		31350	18645	21657	21729	31746	31746					0.05923663566090909
QPCLLHLLQ	9	Unmodified	_QPCLLHLLQ_					0	0	0			REV__ENST00000554976.5_1_14:90421413-90421572:+|nuORF	REV__ENST00000554976.5_1_14:90421413-90421572:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8013305664062	2	532.799694	1063.58484	3.403	0.0018131	-0.73178	-0.00038989	2.6712	0.0014232	532.7992549000471	12.255	0.15996	12.255	12.165	12.325	0					8	5	2	0	0	0	0.37197	1	2560	2560		44.117	0	1	97985	+		31351	20237	21658	21730	31747	31747					0.05558679842147285
QPCTEDAAEL	10	Carbamidomethyl (C)	_QPC(Carbamidomethyl (C))TEDAAEL_	QPC(1)TEDAAEL		QPC(64)TEDAAEL		0	1	0			REV__SLC19A1|p.P556L|1|0.11|ENSG00000173638|chr21:45515767-45515767|G/A|missense_variant	REV__SLC19A1|p.P556L|1|0.11|ENSG00000173638|chr21:45515767-45515767|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2443237304688	2	567.242603	1132.47065	1.6754	0.00095037	1.1092	0.0006292	2.7847	0.0015796	567.2433767769361	20.133	0.31623	20.133	19.978	20.294	0					20	6	4	0	0	0	0.32758	1	6357	6357		64.207	13.015	1	1226100	+		31352	21527	21659	21731	31748	31748	739				-0.09028299501278525
QPDFIYLR	8	Unmodified	_QPDFIYLR_					0	0	0		nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000144290|Q6U841-3|SLC4A10;nc|ENSG00000144290|Q6U841-2|SLC4A10;ENST00000546872.1_1_12:51888707-51890959:+|nuORF;ENST00000446228.5_1_2:162758621-162834241:+|nuORF;ENSG00000144290|ENST00000446997|SLC4A10;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;SLC4A4|p.N1031Sfs*30|1|0.06|ENSG00000080493|chr4:71560246-71560247|-/GCTAC|frameshift_variant;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000050438|Q2Y0W8-4|SLC4A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.281494140625	2	526.282192	1050.54983	0.10018	5.2723E-05	-1.2381	-0.00065159	-1.1379	-0.00059886	526.2814234218878	12.96	0.26044	12.96	12.785	13.046	0					16	7	3	0	0	0	0.60719	1	2806	2806		47.916	0.25827	1	394680			31353	1249;1638	21660	21732	31749	31749					0.026577603058285604
QPDPQRPQ	8	Unmodified	_QPDPQRPQ_					0	0	0		ENSG00000161682|ENST00000293443|FAM171A2	ENSG00000161682|ENST00000293443|FAM171A2	ENSG00000161682|ENST00000293443|FAM171A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.243408203125	2	483.243598	964.472643	0.59271	0.00028642	-0.81595	-0.0003943	-0.22324	-0.00010788	483.2431793486073	15.9	0.34967	15.9	15.813	16.163	0					13	8	2	0	0	0	0.3961	1	4196	4196		71.296	4.8664	1	345170			31354	5421	21661	21733	31750	31750					-0.011014579104767108
QPDRGEDAIAA	11	Unmodified	_QPDRGEDAIAA_					0	0	0		SPINT1|p.K371Nfs*82|1|0.38|ENSG00000166145|chr15:40854517-40854517|A/-|frameshift_variant;ENSG00000166145|ENST00000562057|SPINT1;nc|ENSG00000166145|O43278|SPINT1	SPINT1|p.K371Nfs*82|1|0.38|ENSG00000166145|chr15:40854517-40854517|A/-|frameshift_variant	SPINT1|p.K371Nfs*82|1|0.38|ENSG00000166145|chr15:40854517-40854517|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	381.51971435546875	3	381.519398	1141.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.637	1	23.637	23.137	24.137	0								0	0	0	0.45674	1	7129	7129		18.531	0	1				31355	5861	21662	21734	31751	31751					-0.028741422640450764
QPDTVPPEW	9	Unmodified	_QPDTVPPEW_					0	0	0			REV__nc|ENSG00000131037|Q8TE68-4|EPS8L1	REV__nc|ENSG00000131037|Q8TE68-4|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.8380432128906	3	356.838068	1067.49238	0.4873	0.00017389	-0.27275	-9.7329E-05	0.21454	7.6557E-05	356.8379233634281	27.007	0.17283	27.007	26.914	27.086	0					7	4	2	0	0	0	0.5741	1	9374	9374		19.263	19.263	1	416600	+		31356	14610	21663	21735	31752	31752					-0.03867126690374789
QPEPRSKP	8	Unmodified	_QPEPRSKP_					0	0	0			REV__ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant	REV__ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7561340332031	2	469.756341	937.498129	0.61658	0.00028964	-1.2107	-0.00056874	-0.59413	-0.0002791	469.75575589162503	16.221	0.21671	16.221	16.064	16.28	0					5	4	2	0	0	0	0.49216	1	4607	4607		60.972	7.6205	1	850160	+		31357	13988	21664	21736	31753	31753					0.026880166119553905
QPESVVNTM	9	Unmodified	_QPESVVNTM_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7395324707031	2	502.739499	1003.46445	0.61613	0.00030975	0.018377	9.2389E-06	0.63451	0.00031899	502.7393640734421	33.76	0.19904	33.76	33.67	33.869	0					7	5	2	0	0	0	0.16806	1	12504	12504		65.465	16.255	1	87834			31358	7554	21665	21737	31754	31754					-0.03714772942100808
QPESVVNTM	9	Unmodified	_QPESVVNTM_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2413024902344	2	502.739499	1003.46445	0.064547	3.2451E-05	-0.26292	-0.00013218	-0.19837	-9.973E-05	502.73943237853666	33.763	0.37367	33.763	33.654	34.028	0					20	9	3	0	0	0	0.13726	1	12942	12942		70.816	10.413	1	163250			31359	7554	21665	21737	31755	31755					-0.03714772942100808
QPFEFYMFKDE	11	Unmodified	_QPFEFYMFKDE_					0	0	0			REV__PTEN|p.K267Rfs*9|6|0.32|ENSG00000171862|chr10:87958013-87958013|A/-|frameshift_variant	REV__PTEN|p.K267Rfs*9|6|0.32|ENSG00000171862|chr10:87958013-87958013|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2179870605469	3	494.219961	1479.63805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.292	1	15.292	14.792	15.792	0								0	0	0	0.45674	1	4151	4151		23.378	0.81632	1		+		31360	16437	21666	21738	31756	31756					-0.08258031956506784
QPFGGGSHM	9	Unmodified	_QPFGGGSHM_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.20013427734375	2	459.200344	916.386136	0.69237	0.00031794	-0.37943	-0.00017423	0.31294	0.0001437	459.19998056624325	25.431	0.091593	25.431	25.372	25.463	0					6	4	2	0	0	0	0.41354	1	7652	7652		40.573	10.255	1	31932			31361	1576	21667	21739	31757	31757					-0.07540160736687085
QPFGGGSHM	9	Unmodified	_QPFGGGSHM_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2005310058594	2	459.200344	916.386136	0.16181	7.4302E-05	-0.032014	-1.4701E-05	0.12979	5.9601E-05	459.2004083906862	25.724	0.22265	25.724	25.595	25.818	0					10	4	3	0	0	0	0.14734	1	8816	8816		68.485	40.23	1	240550			31362	1576	21667	21739	31758	31758					-0.07540160736687085
QPFGGGSHM	9	Unmodified	_QPFGGGSHM_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2005615234375	2	459.200344	916.386136	-0.15637	-7.1804E-05	-0.1567	-7.1955E-05	-0.31306	-0.00014376	459.20031675666706	25.712	0.21471	25.712	25.603	25.817	0					8	3	3	0	0	0	0.087582	1	9145	9145		82.305	82.305	1	468830			31363	1576	21667	21739	31759	31759					-0.07540160736687085
QPFRGLKU	8	Unmodified	_QPFRGLKU_					0	0	0			REV__nc|ENSG00000183291|O60613-2|SELENOF	REV__nc|ENSG00000183291|O60613-2|SELENOF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.72882080078125	2	498.730055	995.445557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.255	1	13.255	12.755	13.755	0								0	0	0	1.7419	1	2718	2718		0	0	0		+		31364	16924	21668	21740	31760	31760					-0.05234765285933918
QPFTASLQSVG	11	Unmodified	_QPFTASLQSVG_					0	0	0			REV__nc|ENSG00000179583|P33076-3|CIITA	REV__nc|ENSG00000179583|P33076-3|CIITA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.7940063476562	2	567.793121	1133.57169	1.946	0.001105	-0.17671	-0.00010034	1.7693	0.0010046	567.7931575519661	20.568	0.31974	20.568	20.462	20.781	0					10	6	2	0	0	0	0.40479	1	6702	6702		51.193	5.2407	1	845340	+		31365	16781	21669	21741	31761	31761					0.010245202637634065
QPFVRQRQKKK	11	Unmodified	_QPFVRQRQKKK_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.62762451171875	3	481.628276	1441.863	-0.62405	-0.00030056	-0.3469	-0.00016708	-0.97094	-0.00046763	481.6278999060736	18.231	0.26213	18.231	18.125	18.387	0					13	5	4	0	0	0	0.75314	1	5429	5429		22.562	4.7284	1	918090	+		31366	15035	21670	21742	31762	31762					0.15974303419329772
QPFYHDDSY	9	Unmodified	_QPFYHDDSY_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.S28Yfs*7|1|0.17|ENSG00000171223|chr19:12791850-12791853|CTCT/-|frameshift_variant;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.2383422851562	2	586.238178	1170.4618	1.1467	0.00067225	-0.68946	-0.00040419	0.45726	0.00026807	586.237710881529	32.002	0.82175	32.002	31.899	32.721	0					47	20	4	0	0	0	0.32741	1	11688	11688		47.916	18.766	1	2366900			31367	6284	21671	21743	31763	31763					-0.11660905075427763
QPFYHDDSY	9	Unmodified	_QPFYHDDSY_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.S28Yfs*7|1|0.17|ENSG00000171223|chr19:12791850-12791853|CTCT/-|frameshift_variant;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.2394409179688	2	586.238178	1170.4618	3.6451	0.0021369	-1.6757	-0.00098235	1.9694	0.0011545	586.2370817442862	31.799	0.23684	31.799	31.713	31.95	0					20	9	3	0	0	0	0.26904	1	10565	10565		53.351	26.659	1	164830			31368	6284	21671	21743	31764	31764					-0.11660905075427763
QPFYHDDSY	9	Unmodified	_QPFYHDDSY_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.S28Yfs*7|1|0.17|ENSG00000171223|chr19:12791850-12791853|CTCT/-|frameshift_variant;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.238525390625	2	586.238178	1170.4618	0.81356	0.00047694	0.60813	0.00035651	1.4217	0.00083345	586.2385239718939	31.8	0.42386	31.8	31.677	32.101	0					28	12	3	0	0	0	0.32741	1	10968	10968		47.916	20.033	1	377590			31369	6284	21671	21743	31765	31765					-0.11660905075427763
QPFYHDDSY	9	Unmodified	_QPFYHDDSY_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.S28Yfs*7|1|0.17|ENSG00000171223|chr19:12791850-12791853|CTCT/-|frameshift_variant;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.238525390625	2	586.238178	1170.4618	0.10784	6.3217E-05	0.6723	0.00039413	0.78013	0.00045734	586.2385690476666	31.976	0.97078	31.976	31.818	32.789	0					43	19	5	0	0	0	0.027316	2	11996	11996;12168		111.65	69.252	1	4987700			31370	6284	21671	21743	31766;31767	31766					-0.11660905075427763
QPGLEGERGP	10	Unmodified	_QPGLEGERGP_					0	0	0		COL5A3|p.P1048Lfs*96|1|0.25|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant;ENSG00000080573|ENST00000264828|COL5A3	COL5A3|p.P1048Lfs*96|1|0.25|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	COL5A3|p.P1048Lfs*96|1|0.25|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.26318359375	2	520.261988	1038.50942	0.067273	3.4999E-05	1.513	0.00078716	1.5803	0.00082216	520.2630410274747	14.415	0.25032	14.415	14.327	14.578	0					9	6	2	0	0	0	0.58896	1	3512	3512		35.618	0	1	460330			31371	613	21672	21744	31768	31768					-0.008292060845633387
QPGSVKKV	8	Unmodified	_QPGSVKKV_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3;CNN3|p.Q94Sfs*9|1|0.25|ENSG00000117519|chr1:94902225-94902226|-/A|frameshift_variant	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.75848388671875	2	421.758352	841.502152	0.1271	5.3604E-05	0.37258	0.00015714	0.49968	0.00021074	421.7584650972301	13.688	0.22695	13.688	13.548	13.775	0					29	12	3	0	0	0	0.58597	1	2753	2753		51.335	0	1	302700			31372	3043	21673	21745	31769	31769					0.07506106105665822
QPGTTILQY	9	Unmodified	_QPGTTILQY_					0	0	0		ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1	ENSG00000118260|ENST00000353267|CREB1	ENSG00000118260|ENST00000353267|CREB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7724609375	2	510.771657	1019.52876	1.2201	0.00062321	0.94249	0.0004814	2.1626	0.0011046	510.77176975698137	42.828	0.174	42.828	42.74	42.914	0					15	8	2	0	0	0	0.12239	1	16185	16185		74.255	2.9593	1	51582			31373	3068	21674	21746	31770	31770					0.019777502063334396
QPHLYSLIW	9	Unmodified	_QPHLYSLIW_					0	0	0			REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8093872070312	2	578.811116	1155.60768	1.6484	0.00095409	-1.3718	-0.00079399	0.2766	0.0001601	578.8101522705462	39.107	0.94375	39.107	38.919	39.863	0					53	32	2	0	0	0	0.47038	1	15551	15551		35.618	2.8059	1	136810	+		31374	18596	21675	21747	31771	31771					0.03610022231282528
QPHNTQLQ	8	Unmodified	_QPHNTQLQ_					0	0	0			REV__ENST00000452463.5_1_7:137600644-137612913:-|nuORF	REV__ENST00000452463.5_1_7:137600644-137612913:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.24322509765625	2	483.243598	964.472643	0.88084	0.00042566	-1.4396	-0.00069567	-0.55876	-0.00027002	483.24283394021273	15.84	0.47045	15.84	15.78	16.251	0					15	9	3	0	0	0	0.49216	1	4274	4274		60.972	0	1	1750700	+		31375	19316	21676	21748	31772	31772					-0.011014579104767108
QPHPQLFS	8	Unmodified	_QPHPQLFS_					0	0	0			REV__ENSG00000197993|ENST00000355265|KEL	REV__ENSG00000197993|ENST00000355265|KEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2452697753906	2	477.245609	952.476666	-1.4972	-0.00071454	1.1808	0.00056353	-0.3164	-0.000151	477.2460880775798	36.132	0.3176	36.132	36.005	36.323	0					24	14	2	0	0	0	0.70055	1	12222	12222		33.516	7.9415	1	101560	+		31376	17375	21677	21749	31773	31773					-0.0014736841676494805
QPIAPQTTF	9	Unmodified	_QPIAPQTTF_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7660217285156	2	501.766374	1001.5182	0.039727	1.9934E-05	-0.40537	-0.0002034	-0.36564	-0.00018347	501.76619008726374	38.803	0.25171	38.803	38.656	38.907	0					17	9	2	0	0	0	0.037569	1	15220	15220		101.6	42.819	1	128790			31377	391	21678	21750	31774	31774					0.017497675518939104
QPICPCLNQ	9	Unmodified	_QPICPCLNQ_					0	0	0			REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3	REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.24078369140625	2	508.238612	1014.46267	2.9659	0.0015074	2.306	0.001172	5.2719	0.0026794	508.2393454294916	13.043	0.10152	13.043	12.994	13.095	0					6	2	3	0	0	0	0.35045	1	2937	2937		45.952	5.3793	1	372790	+		31378	17570	21679	21751	31775	31775					-0.04398105231734917
QPIDPNQRY	9	Unmodified	_QPIDPNQRY_					0	0	0			REV__nc|ENSG00000113790|Q08426-2|EHHADH	REV__nc|ENSG00000113790|Q08426-2|EHHADH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.7835693359375	2	565.783087	1129.55162	0.76846	0.00043478	-0.35588	-0.00020135	0.41258	0.00023343	565.7827601445125	25.457	0.41432	25.457	25.205	25.62	0					13	8	2	0	0	0	0.42902	1	8985	8985		39.253	1.4413	1	108410	+		31379	12778	21680	21752	31776	31776					-0.007972306761985237
QPIDSIRGY	9	Unmodified	_QPIDSIRGY_					0	0	0		nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10;ANO10|p.R285Gfs*49|1|0.15|ENSG00000160746|chr3:43577001-43577001|G/-|frameshift_variant	nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7757568359375	2	524.774731	1047.53491	1.0029	0.0005263	-0.36552	-0.00019182	0.63739	0.00033448	524.7747167336921	33.537	0.23195	33.537	33.402	33.634	0					8	5	2	0	0	0	0.42902	1	12837	12837		39.253	2.0937	1	212850			31380	5380	21681	21753	31777	31777					0.013042684378660852
QPIEGHAASF	10	Unmodified	_QPIEGHAASF_					0	0	0		CLTC-CEP95|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	CLTC-CEP95|1|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7598876953125	2	528.759081	1055.50361	0.90631	0.00047922	0.30607	0.00016184	1.2124	0.00064106	528.7592942663225	28.541	0.31301	28.541	28.432	28.745	0					14	6	3	0	0	0	0.50881	1	10477	10477		44.377	5.1244	1	307930			31381	4438;562	21682	21754	31778	31778					-0.02192304596246686
QPILFTSSMS	10	Oxidation (M)	_QPILFTSSM(Oxidation (M))S_		QPILFTSSM(1)S		QPILFTSSM(46)S	0	0	1		EVI2B|p.T35I|1|0.04|ENSG00000185862|chr17:31305506-31305506|G/A|missense_variant	EVI2B|p.T35I|1|0.04|ENSG00000185862|chr17:31305506-31305506|G/A|missense_variant	EVI2B|p.T35I|1|0.04|ENSG00000185862|chr17:31305506-31305506|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.775390625	2	563.776082	1125.53761	0.40414	0.00022784	-2.3841	-0.0013441	-1.9799	-0.0011162	563.7749189140849	13.301	0.27538	13.301	13.142	13.417	0					15	7	4	0	0	0	0.49411	1	3001	3001		45.972	6.7194	1	1043400			31382	11121	21683	21755	31779	31779		432			-0.02013644219505295
QPINLIFRY	9	Unmodified	_QPINLIFRY_					0	0	0		SNRPE|p.Q26H|1|0.3|ENSG00000182004|chr1:203862219-203862219|A/C|missense_variant;ENSG00000182004|ENST00000414487|SNRPE	SNRPE|p.Q26H|1|0.3|ENSG00000182004|chr1:203862219-203862219|A/C|missense_variant	SNRPE|p.Q26H|1|0.3|ENSG00000182004|chr1:203862219-203862219|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.3334350585938	2	582.332216	1162.64988	1.6635	0.00096868	-0.62092	-0.00036158	1.0425	0.0006071	582.3318424978349	49.977	0.1827	49.977	49.891	50.074	0					13	8	2	0	0	0	0.45358	1	19752	19752		37.159	5.6293	1	87290			31383	6873	21684	21756	31780	31780					0.07505997639646012
QPIRVKKY	8	Unmodified	_QPIRVKKY_					0	0	0		ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	ENSG00000070669|ENST00000394308|ASNS	ENSG00000070669|ENST00000394308|ASNS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.3233032226562	2	516.321651	1030.62875	-0.51491	-0.00026586	1.3304	0.00068689	0.81544	0.00042103	516.3227520894126	25.089	0.46389	25.089	24.826	25.29	0					7	4	2	0	0	0	0.65276	1	8845	8845		40.573	3.4135	1	158240			31384	1453	21685	21757	31781	31781					0.1146603233080441
QPKPSKSSF	9	Unmodified	_QPKPSKSSF_					0	0	0			REV__nc|ENSG00000116748|P23109-2|AMPD1	REV__nc|ENSG00000116748|P23109-2|AMPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2718505859375	2	503.271824	1004.5291	-2.0489	-0.0010311	2.5543	0.0012855	0.5054	0.00025436	503.2729968851589	39.113	0.16988	39.113	39.049	39.219	0					13	8	2	0	0	0	0.4966	1	13951	13951		32.812	0	1	111070	+		31385	14165	21686	21758	31782	31782					0.027011699261947797
QPKVPRSE	8	Unmodified	_QPKVPRSE_					0	0	0			REV__ENST00000456324.5_1_19:36705694-36705913:+|nuORF	REV__ENST00000456324.5_1_19:36705694-36705913:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7635192871094	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.172	1	16.172	15.672	16.672	0								0	0	0	1.7419	1	3777	3777		34.173	9.9698	1		+		31386	19349	21687	21759	31783	31783					0.04160303129003751
QPLHITSI	8	Unmodified	_QPLHITSI_					0	0	0			REV__BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	REV__BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.76336669921875	2	454.763635	907.512717	0.098204	4.466E-05	-0.92802	-0.00042203	-0.82981	-0.00037737	454.7633074846487	35.716	0.19304	35.716	35.597	35.79	0					14	7	3	0	0	0	0.76283	1	12725	12725		25.45	0	1	247890	+		31387	12307	21688	21760	31784	31784					0.055260887600866226
QPLIPTVSP	9	Unmodified	_QPLIPTVSP_					0	0	0			REV__CGB5|p.D159V|1|0.07|ENSG00000196337|chr19:49045272-49045272|A/T|missense_variant	REV__CGB5|p.D159V|1|0.07|ENSG00000196337|chr19:49045272-49045272|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7839660644531	2	476.279118	950.543683	0.62945	0.00029979	4.287	0.0020418	4.9165	0.0023416	476.28117230128316	11.612	0.15656	11.612	11.506	11.663	0					7	4	2	0	0	0	0.099922	1	2402	2402		79.451	19.157	1	411910	+		31388	12449	21689	21761	31785	31785					0.06643242074324007
QPLKLDTSF	9	Unmodified	_QPLKLDTSF_					0	0	0		ENST00000591307.5_1_17:40972740-40975895:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7880249023438	2	524.787307	1047.56006	2.043	0.0010722	-0.029712	-1.5593E-05	2.0133	0.0010566	524.7871983444511	40.467	0.22355	40.467	40.39	40.614	0					14	8	2	0	0	0	0.35045	1	15418	15418		45.952	10.334	1	314280			31389	3481	21690	21762	31786	31786					0.03818323240398058
QPLKLDTSF	9	Unmodified	_QPLKLDTSF_					0	0	0		ENST00000591307.5_1_17:40972740-40975895:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.787841796875	2	524.787307	1047.56006	1.8558	0.00097388	-1.1668	-0.00061234	0.68893	0.00036154	524.7866865681221	40.509	0.33751	40.509	40.354	40.691	0					28	13	3	0	0	0	0.24095	1	15414	15414		56.721	15.943	1	547870			31390	3481	21690	21762	31787	31787					0.03818323240398058
QPLKLDTSF	9	Unmodified	_QPLKLDTSF_					0	0	0		ENST00000591307.5_1_17:40972740-40975895:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7870483398438	2	524.787307	1047.56006	0.99993	0.00052475	-0.14816	-7.775E-05	0.85178	0.000447	524.7871980975484	40.448	0.31567	40.448	40.345	40.661	0					37	12	4	0	0	0	0.16002	1	15915	15915		66.429	24.033	1	977510			31391	3481	21690	21762	31788	31788					0.03818323240398058
QPLKLDTSF	9	Unmodified	_QPLKLDTSF_					0	0	0		ENST00000591307.5_1_17:40972740-40975895:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	ENST00000591307.5_1_17:40972740-40975895:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7881469726562	2	524.787307	1047.56006	0.54229	0.00028458	0.24938	0.00013087	0.79167	0.00041546	524.7873732420438	40.416	0.46701	40.416	40.268	40.735	0					30	10	5	0	0	0	0.35045	1	16009	16009		45.952	5.1738	1	3105300			31392	3481	21690	21762	31789	31789					0.03818323240398058
QPLKNPSVP	9	Unmodified	_QPLKNPSVP_					0	0	0		NMT2|p.S81L|1|0.19|ENSG00000152465|chr10:15141426-15141426|G/A|missense_variant	NMT2|p.S81L|1|0.19|ENSG00000152465|chr10:15141426-15141426|G/A|missense_variant	NMT2|p.S81L|1|0.19|ENSG00000152465|chr10:15141426-15141426|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.28216552734375	2	490.282192	978.549831	-0.47832	-0.00023451	-0.12438	-6.0981E-05	-0.6027	-0.00029549	490.2827245460749	40.148	0.26869	40.148	40.038	40.307	0					19	11	3	0	0	0	0.53083	1	15293	15293		29.15	1.2673	1	108420			31393	11861	21691	21763	31790	31790					0.05969760305845284
QPLLQQSG	8	Unmodified	_QPLLQQSG_					0	0	0			REV__ENST00000559694.5_1_14:24526437-24530034:+|nuORF	REV__ENST00000559694.5_1_14:24526437-24530034:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.7373046875	2	435.737617	869.460681	-0.63654	-0.00027736	0.05848	2.5482E-05	-0.57806	-0.00025188	435.73769787955007	27.336	0.37978	27.336	27.249	27.629	0					13	9	2	0	0	0	0.58686	1	8922	8922		51.193	1.7511	1	243380	+		31394	20278	21692	21764	31791	31791					0.02072925346340071
QPLLSHTVI	9	Unmodified	_QPLLSHTVI_					0	0	0			REV__ENST00000445995.2_1_9:98056039-98057089:+|nuORF	REV__ENST00000445995.2_1_9:98056039-98057089:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.959	1	28.959	28.459	29.459	0								0	0	0	0.35507	1	9094	9094		18.262	0	1		+		31395	19277	21693	21765	31792	31792					0.0781033333993264
QPLNSVQKAL	10	Unmodified	_QPLNSVQKAL_					0	0	0			REV__ARHGAP22|p.F312Lfs*10|1|0.3|ENSG00000128805|chr10:48453356-48453356|A/-|frameshift_variant	REV__ARHGAP22|p.F312Lfs*10|1|0.3|ENSG00000128805|chr10:48453356-48453356|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.3196411132812	2	549.319306	1096.62406	1.5912	0.00087409	-0.87761	-0.00048209	0.71361	0.000392	549.3189415339219	16.211	0.10024	16.211	16.157	16.258	0					10	5	2	0	0	0	0.28036	1	3653	3653		69.628	0	1	114380	+		31396	12204	21694	21766	31793	31793					0.0796110339738334
QPLQLQTAEA	10	Unmodified	_QPLQLQTAEA_					0	0	0		ENST00000220913.9_1_8:141525461-141525764:+|nuORF	ENST00000220913.9_1_8:141525461-141525764:+|nuORF	ENST00000220913.9_1_8:141525461-141525764:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7918701171875	2	549.793121	1097.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.351	1	11.351	10.851	11.851	0								0	0	0	0.4201	1	2182	2182		19.104	1.6355	1				31397	8177	21695	21767	31794	31794					0.02680520263766084
QPLVGLQVY	9	Unmodified	_QPLVGLQVY_					0	0	0			REV__CELA1|p.G208Afs*7|1|0.14|ENSG00000139610|chr12:51329820-51329820|C/-|frameshift_variant	REV__CELA1|p.G208Afs*7|1|0.14|ENSG00000139610|chr12:51329820-51329820|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7916259765625	2	508.792392	1015.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.37	1	49.37	48.87	49.87	0								0	0	0	0.35507	1	19528	19528		24.203	0	1		+		31398	12413	21696	21768	31795	31795					0.06306930965661195
QPLYYLIQ	8	Unmodified	_QPLYYLIQ_					0	0	0			REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2865600585938	2	519.286943	1036.55933	0.17886	9.288E-05	-1.6492	-0.00085642	-1.4704	-0.00076354	519.2864385724222	16.004	0.066635	16.004	15.953	16.02	0					4	2	2	0	0	0	0.76283	1	3752	3752		25.45	0	1	34804	+		31399	16802	21697	21769	31796	31796					0.042515285913850676
QPMEVQEGY	9	Unmodified	_QPMEVQEGY_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7374877929688	2	540.736957	1079.45936	1.6671	0.00090144	-0.1982	-0.00010718	1.4689	0.00079427	540.737058274592	33.908	0.26433	33.908	33.779	34.044	0					17	10	2	0	0	0	0.35021	1	11038	11038		45.972	10.354	1	80585			31400	3665	21698	21770	31797	31797					-0.07719076804710312
QPMEVQEGY	9	Unmodified	_QPMEVQEGY_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7372436523438	2	540.736957	1079.45936	1.9099	0.0010328	-1.2952	-0.00070034	0.61479	0.00033244	540.7365592837334	34.147	0.38884	34.147	34.037	34.426	0					28	10	4	0	0	0	0.22837	1	12671	12671		58.23	21.201	1	490170			31401	3665	21698	21770	31798	31798					-0.07719076804710312
QPMEVQEGY	9	Unmodified	_QPMEVQEGY_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.73779296875	2	540.736957	1079.45936	4.8879	0.002643	-2.7483	-0.0014861	2.1395	0.0011569	540.7356909134976	33.978	0.33312	33.978	33.842	34.175	0					23	13	3	0	0	0	0.055856	1	11412	11412		93.195	47.244	1	95048			31402	3665	21698	21770	31799	31799					-0.07719076804710312
QPMEVQEGY	9	Unmodified	_QPMEVQEGY_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7371215820312	2	540.736957	1079.45936	1.3799	0.00074619	-0.89548	-0.00048422	0.48447	0.00026197	540.7365761678723	34.182	0.46836	34.182	34.012	34.48	0					26	11	4	0	0	0	0.012231	1	13109	13109		136.27	90.316	1	580230			31403	3665	21698	21770	31800	31800					-0.07719076804710312
QPMEVQEGY	9	Unmodified	_QPMEVQEGY_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7385864257812	2	540.736957	1079.45936	2.1408	0.0011576	-0.416	-0.00022494	1.7248	0.00093265	540.7368140919193	33.989	0.37022	33.989	33.818	34.188	0					16	10	2	0	0	0	0.10915	1	11943	11943		77.318	34.921	1	104920			31404	3665	21698	21770	31801	31801					-0.07719076804710312
QPMEVQEGY	9	Unmodified	_QPMEVQEGY_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7369384765625	2	540.736957	1079.45936	0.65712	0.00035533	-0.039296	-2.1249E-05	0.61783	0.00033408	540.736972040559	34.109	0.45193	34.109	33.957	34.409	0					25	9	4	0	0	0	0.063823	1	13005	13005		90.37	24.567	1	1256100			31405	3665	21698	21770	31802	31802					-0.07719076804710312
QPMEVQEGY	9	Oxidation (M)	_QPM(Oxidation (M))EVQEGY_		QPM(1)EVQEGY		QPM(55)EVQEGY	0	0	1		ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7352294921875	2	548.734414	1095.45428	0.60388	0.00033137	-0.085945	-4.7161E-05	0.51794	0.00028421	548.7345205854622	28.169	0.25174	28.169	28.096	28.348	0					9	5	2	0	0	0	0.25716	1	10320	10320		54.776	7.119	1	40542			31406	3665	21698	21771	31803	31803		154			-0.0896338066734188
QPMNPTQNM	9	Unmodified	_QPMNPTQNM_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7313232421875	2	530.731151	1059.44775	1.1955	0.00063448	-0.10599	-5.625E-05	1.0895	0.00057823	530.7309525207189	31.058	0.30651	31.058	30.903	31.21	0					14	8	2	0	0	0	0.40353	1	10650	10650		41.427	5.8083	1	122750			31407	3989	21699	21772	31804	31804					-0.0795959709971612
QPMNPTQNM	9	Unmodified	_QPMNPTQNM_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7313232421875	2	530.731151	1059.44775	0.72708	0.00038588	-0.65762	-0.00034902	0.069463	3.6866E-05	530.7308762382258	31.298	0.40764	31.298	30.978	31.386	0					12	8	2	0	0	0	0.28897	1	11666	11666		51.193	10.415	1	152250			31408	3989	21699	21772	31805	31805					-0.0795959709971612
QPMNPTQNM	9	Unmodified	_QPMNPTQNM_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7315063476562	2	530.731151	1059.44775	1.6667	0.00088457	-1.2868	-0.00068295	0.3799	0.00020162	530.730710671255	31.28	0.55952	31.28	31.011	31.571	0					31	11	4	0	0	0	0.10506	1	11705	11705		78.264	46.309	1	589840			31409	3989	21699	21772	31806	31806					-0.0795959709971612
QPNMHGEKL	9	Unmodified	_QPNMHGEKL_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7638549804688	2	527.260933	1052.50731	0.33349	0.00017583	0.67587	0.00035636	1.0094	0.00053219	527.2614494949527	17.445	0.16914	17.445	17.336	17.505	0					15	6	3	0	0	0	0.26904	1	4355	4355		53.351	0	1	180920	+		31410	12745	21700	21773	31807	31807					-0.016839580940086307
QPNPEARLRRA	11	Unmodified	_QPNPEARLRRA_					0	0	0		nc|ENSG00000078246|O75386-2|TULP3;ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-3|TULP3	nc|ENSG00000078246|O75386-2|TULP3	nc|ENSG00000078246|O75386-2|TULP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	654.3673706054688	2	654.368184	1306.72182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.639	1	48.639	48.139	49.139	0								0	0	0	0.45674	1	19313	19313		20.03	0.033703	1				31411	1598	21701	21774	31808	31808					0.08072305046061956
QPNPGDAL	8	Unmodified	_QPNPGDAL_					0	0	0		nc|ENSG00000141985|Q99961-2|SH3GL1	nc|ENSG00000141985|Q99961-2|SH3GL1	nc|ENSG00000141985|Q99961-2|SH3GL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.2002258300781	2	406.200867	810.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.305	1	22.305	21.805	22.805	0								0	0	0	1.7419	1	6544	6544		40.573	8.6178	1				31412	11555	21702	21775	31809	31809					-0.025596230961355104
QPPPLALKQ	9	Unmodified	_QPPPLALKQ_					0	0	0		nc|ENSG00000050767|Q86Y22-2|COL23A1	nc|ENSG00000050767|Q86Y22-2|COL23A1	nc|ENSG00000050767|Q86Y22-2|COL23A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2998962402344	2	496.300384	990.586216	0.085476	4.2422E-05	-2.6429	-0.0013117	-2.5574	-0.0012693	496.2992528591888	12.968	0.05867	12.968	12.918	12.976	0					4	2	2	0	0	0	0.61124	1	2502	2502		10.866	0.6003	1	64839			31413	11426	21703	21776	31810	31810					0.09054637202541471
QPPRSGGL	8	Unmodified	_QPPRSGGL_					0	0	0			REV__ENST00000583842.1_1_11:118881994-118882714:+|nuORF	REV__ENST00000583842.1_1_11:118881994-118882714:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.2241516113281	2	406.224677	810.434801	-1.3816	-0.00056124	0.88808	0.00036076	-0.49352	-0.00020048	406.2250507824501	21.448	0.29918	21.448	21.254	21.553	0					16	9	2	0	0	0	0.77246	1	6130	6130		24.203	1.1603	1	101170	+		31414	19996	21704	21777	31811	31811					0.02200075894722886
QPPRSGGL	8	Unmodified	_QPPRSGGL_					0	0	0			REV__ENST00000583842.1_1_11:118881994-118882714:+|nuORF	REV__ENST00000583842.1_1_11:118881994-118882714:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.2245788574219	2	406.224677	810.434801	1.1165	0.00045354	-3.1893	-0.0012956	-2.0728	-0.00084202	406.22288166974556	21.628	0.9142	21.628	21.256	22.17	0					36	18	3	0	0	0	0.59773	1	7231	7231		49.442	7.0454	1	542540	+		31415	19996	21704	21777	31812	31812					0.02200075894722886
QPPSALRRA	9	Unmodified	_QPPSALRRA_					0	0	0			REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2904357910156	2	498.290882	994.567212	0.81686	0.00040703	-1.6784	-0.00083633	-0.86155	-0.0004293	498.2902885744081	11.429	0.1079	11.429	11.37	11.478	0					5	3	2	0	0	0	0.61124	1	2350	2350		19.997	2.6318	1	30570	+		31416	19105	21705	21778	31813	31813					0.06971100631517402
QPPTPRAI	8	Unmodified	_QPPTPRAI_					0	0	0			REV__nc|ENSG00000204463|P46379-2|BAG6	REV__nc|ENSG00000204463|P46379-2|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.2558898925781	2	440.255977	878.497401	-0.28507	-0.0001255	-0.49348	-0.00021726	-0.77855	-0.00034276	440.2558214509954	23.329	0.55585	23.329	23.135	23.691	0					37	17	3	0	0	0	0.62915	1	6741	6741		44.377	6.5657	1	183040	+		31417	17486	21706	21779	31814	31814					0.05329221962904285
QPPTPRAI	8	Unmodified	_QPPTPRAI_					0	0	0			REV__nc|ENSG00000204463|P46379-2|BAG6	REV__nc|ENSG00000204463|P46379-2|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.25579833984375	2	440.255977	878.497401	-0.35339	-0.00015558	-0.4171	-0.00018363	-0.77049	-0.00033921	440.2559400511388	23.688	0.83603	23.688	23.473	24.309	0					64	19	5	0	0	0	0.50061	1	7863	7863		60.118	5.3419	1	1312300	+		31418	17486	21706	21779	31815	31815					0.05329221962904285
QPPVGASR	8	Unmodified	_QPPVGASR_					0	0	0		ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.2246398925781	2	406.224677	810.434801	0.4079	0.0001657	-0.37432	-0.00015206	0.033574	1.3639E-05	406.22442752597584	21.617	0.3682	21.617	21.441	21.809	0					13	7	2	0	0	0	0.64144	1	7224	7224		42.396	8.2236	1	95941			31419	6045	21707	21780	31816	31816					0.022000758947115173
QPQAETAGLA	10	Unmodified	_QPQAETAGLA_					0	0	0			REV__ENSG00000180535|ENST00000609256|BHLHA15	REV__ENSG00000180535|ENST00000609256|BHLHA15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2532043457031	2	493.251089	984.487624	3.45	0.0017017	1.0797	0.00053256	4.5297	0.0022343	493.25163953660586	33.13	0.12228	33.13	33.056	33.178	0					10	5	2	0	0	0	0.62235	1	11086	11086		31.53	2.3598	1	44057	+		31420	16812	21708	21781	31817	31817					-0.005240108331349802
QPQHIHIY	8	Unmodified	_QPQHIHIY_					0	0	0		ENST00000591201.5_1_19:1483001-1487304:-|nuORF;ENST00000586616.5_1_19:1482426-1487301:-|nuORF;ENST00000441747.6_1_19:1482202-1488015:-|nuORF;ENSG00000115257|ENST00000300954|PCSK4	ENST00000591201.5_1_19:1483001-1487304:-|nuORF	ENST00000591201.5_1_19:1483001-1487304:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2706298828125	2	518.272158	1034.52976	1.5737	0.00081562	-2.3156	-0.0012001	-0.74186	-0.00038449	518.2708862605803	44.568	0.16158	44.568	44.483	44.644	0					9	6	2	0	0	0	0.66238	1	17857	17857		39.021	1.8624	1	55502			31421	10962	21709	21782	31818	31818					0.013880093659054182
QPQKKYNQ	8	Unmodified	_QPQKKYNQ_					0	0	0			REV__GSAP|p.R793Q|1|0.48|ENSG00000186088|chr7:77311936-77311936|C/T|missense_variant	REV__GSAP|p.R793Q|1|0.48|ENSG00000186088|chr7:77311936-77311936|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2732543945312	2	517.274898	1032.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.759	1	12.759	12.259	13.259	0								0	0	0	1.7419	1	2795	2795		62.978	2.6845	1		+		31422	20709	21710	21783	31819	31819					0.02027688157704688
QPQPSQAQ	8	Unmodified	_QPQPSQAQ_					0	0	0			REV__ENSG00000185666|ENST00000358763|SYN3	REV__ENSG00000185666|ENST00000358763|SYN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2166442871094	2	442.217049	882.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.753	1	20.753	20.253	21.253	0								0	0	0	1.7419	1	6491	6491		42.474	0	1		+		31423	17041	21711	21784	31820	31820					-0.026368356931357084
QPQQTFNIY	9	Unmodified	_QPQQTFNIY_					0	0	0		nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF;STAB1|p.V800Cfs*113|1|0.34|ENSG00000010327|chr3:52509914-52509914|G/-|frameshift_variant;STAB1|p.P978Lfs*57|1|0.35|ENSG00000010327|chr3:52512385-52512385|C/-|frameshift_variant;STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant;STAB1|p.R1122Pfs*37|1|0.37|ENSG00000010327|chr3:52513891-52513892|-/C|frameshift_variant;STAB1|p.G1507Afs*84|1|0.26|ENSG00000010327|chr3:52517346-52517346|G/-|frameshift_variant;STAB1|p.E1712Rfs*8|1|0.12|ENSG00000010327|chr3:52519356-52519357|-/C|frameshift_variant;STAB1|p.F2001Lfs*111|1|0.35|ENSG00000010327|chr3:52521452-52521452|T/-|frameshift_variant;ENSG00000010327|ENST00000321725|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7813720703125	2	569.780013	1137.54547	1.7541	0.00099944	-0.038321	-2.1835E-05	1.7158	0.0009776	569.7799188462471	43.951	0.23537	43.951	43.83	44.065	0					16	12	2	0	0	0	0.36892	1	16524	16524		44.377	0.26039	1	84217			31424	1038	21712	21785	31821	31821					-0.01779748907688372
QPQQTFNIY	9	Unmodified	_QPQQTFNIY_					0	0	0		nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF;STAB1|p.V800Cfs*113|1|0.34|ENSG00000010327|chr3:52509914-52509914|G/-|frameshift_variant;STAB1|p.P978Lfs*57|1|0.35|ENSG00000010327|chr3:52512385-52512385|C/-|frameshift_variant;STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant;STAB1|p.R1122Pfs*37|1|0.37|ENSG00000010327|chr3:52513891-52513892|-/C|frameshift_variant;STAB1|p.G1507Afs*84|1|0.26|ENSG00000010327|chr3:52517346-52517346|G/-|frameshift_variant;STAB1|p.E1712Rfs*8|1|0.12|ENSG00000010327|chr3:52519356-52519357|-/C|frameshift_variant;STAB1|p.F2001Lfs*111|1|0.35|ENSG00000010327|chr3:52521452-52521452|T/-|frameshift_variant;ENSG00000010327|ENST00000321725|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7803344726562	2	569.780013	1137.54547	1.625	0.00092591	-0.85131	-0.00048506	0.77372	0.00044085	569.7795190269792	43.843	0.32264	43.843	43.739	44.062	0					32	11	4	0	0	0	0.13267	1	17553	17553		71.877	22.436	1	402990			31425	1038	21712	21785	31822	31822					-0.01779748907688372
QPQQTFNIY	9	Unmodified	_QPQQTFNIY_					0	0	0		nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF;STAB1|p.V800Cfs*113|1|0.34|ENSG00000010327|chr3:52509914-52509914|G/-|frameshift_variant;STAB1|p.P978Lfs*57|1|0.35|ENSG00000010327|chr3:52512385-52512385|C/-|frameshift_variant;STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant;STAB1|p.R1122Pfs*37|1|0.37|ENSG00000010327|chr3:52513891-52513892|-/C|frameshift_variant;STAB1|p.G1507Afs*84|1|0.26|ENSG00000010327|chr3:52517346-52517346|G/-|frameshift_variant;STAB1|p.E1712Rfs*8|1|0.12|ENSG00000010327|chr3:52519356-52519357|-/C|frameshift_variant;STAB1|p.F2001Lfs*111|1|0.35|ENSG00000010327|chr3:52521452-52521452|T/-|frameshift_variant;ENSG00000010327|ENST00000321725|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7808837890625	2	569.780013	1137.54547	3.4335	0.0019563	-2.1215	-0.0012088	1.312	0.00074754	569.7790223076053	43.848	0.35017	43.848	43.727	44.077	0					31	12	4	0	0	0	0.15163	1	17548	17548		67.494	16.301	1	329930			31426	1038	21712	21785	31823	31823					-0.01779748907688372
QPQRKFLE	8	Unmodified	_QPQRKFLE_					0	0	0		SERPINA12|p.K155N|1|0.36|ENSG00000165953|chr14:94497933-94497933|C/A|missense_variant;SERPINA12|p.N267Kfs*10|1|0.2|ENSG00000165953|chr14:94496477-94496478|-/T|frameshift_variant;ENSG00000165953|ENST00000677451|SERPINA12	SERPINA12|p.K155N|1|0.36|ENSG00000165953|chr14:94497933-94497933|C/A|missense_variant	SERPINA12|p.K155N|1|0.36|ENSG00000165953|chr14:94497933-94497933|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2925415039062	2	523.293091	1044.57163	1.5009	0.00078543	-3.473	-0.0018174	-1.9721	-0.001032	523.291330249711	13.414	0.076982	13.414	13.363	13.44	0					6	4	2	0	0	0	0.41952	1	2633	2633		68.485	0.99103	1	73513			31427	5847	21713	21786	31824	31824					0.05112565054423612
QPQSRSEVFV	10	Unmodified	_QPQSRSEVFV_					0	0	0			REV__ENST00000392627.5_1_17:72443273-72443525:+|nuORF	REV__ENST00000392627.5_1_17:72443273-72443525:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.8057861328125	2	588.80402	1175.59349	3.186	0.0018759	0.29838	0.00017569	3.4843	0.0020516	588.8042314247875	39.058	0.34535	39.058	38.856	39.202	0					12	7	3	0	0	0	0.62235	1	15415	15415		31.53	0	1	234010	+		31428	18832	21714	21787	31825	31825					0.012713250123169928
QPQSSSPVY	9	Unmodified	_QPQSSSPVY_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7379150390625	2	496.737814	991.461075	0.54799	0.00027221	-0.95779	-0.00047577	-0.4098	-0.00020357	496.7372993448454	27.521	0.34605	27.521	27.39	27.736	0					12	8	2	0	0	0	0.48389	1	9614	9614		34.173	2.6427	1	117820			31429	1804	21715	21788	31826	31826					-0.03499699724466154
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.278076171875	2	531.277972	1060.54139	-0.15375	-8.1682E-05	1.5067	0.0008005	1.353	0.00071882	531.2787623782638	18.152	0.14478	18.152	18.064	18.209	0					8	5	2	0	0	0	0.14603	1	4692	4692		68.787	10.005	1	43396			31430	9125	21716	21789	31827	31827					0.013542063892145961
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2782592773438	2	531.277972	1060.54139	-1.2319	-0.00065447	2.5846	0.0013731	1.3527	0.00071868	531.2790326090081	18.239	0.085911	18.239	18.18	18.266	0					4	2	2	0	0	0	0.41113	1	4725	4725		40.778	3.6191	1	63267			31431	9125	21716	21789	31828	31828					0.013542063892145961
QPRDYRRS	8	Unmodified	_QPRDYRRS_					0	0	0			REV__ENSG00000128578|ENST00000249344|STRIP2	REV__ENSG00000128578|ENST00000249344|STRIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.28125	2	539.281046	1076.54754	1.9899	0.0010731	-1.22	-0.0006579	0.76993	0.00041521	539.2802451220458	17.543	0.24748	17.543	17.46	17.708	0					12	6	3	0	0	0	0.65276	1	4980	4980		40.573	1.7665	1	905960	+		31432	14518	21717	21790	31829	31829					0.012327246207405551
QPRENPFQN	9	Unmodified	_QPRENPFQN_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.2737426757812	2	565.272887	1128.53122	1.7737	0.0010026	-0.017861	-1.0096E-05	1.7558	0.00099252	565.2727902956293	23.794	0.41926	23.794	23.604	24.024	0					23	9	4	0	0	0	0.1115	1	7917	7917		76.774	11.309	1	1209200			31433	1408	21718	21791	31830	31830					-0.027904013360057434
QPRENPFQN	9	Unmodified	_QPRENPFQN_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.2740478515625	2	565.272887	1128.53122	1.906	0.0010774	-0.060033	-3.3935E-05	1.846	0.0010435	565.2728150766603	23.703	0.46738	23.703	23.496	23.963	0					24	9	4	0	0	0	0.16002	1	8191	8191		66.429	2.222	1	2098900			31434	1408	21718	21791	31831	31831					-0.027904013360057434
QPRENPFQN	9	Unmodified	_QPRENPFQN_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.2739868164062	2	565.272887	1128.53122	0.8199	0.00046347	1.2633	0.00071408	2.0832	0.0011776	565.273693079417	23.543	0.25299	23.543	23.432	23.685	0					13	6	3	0	0	0	0.27249	1	7185	7185		52.937	0	1	197400			31435	1408	21718	21791	31832	31832					-0.027904013360057434
QPRLAPAA	8	Unmodified	_QPRLAPAA_					0	0	0		ENST00000416247.3_1_6:11094319-11094565:+|nuORF	ENST00000416247.3_1_6:11094319-11094565:+|nuORF	ENST00000416247.3_1_6:11094319-11094565:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.2429504394531	2	412.24287	822.471186	0.058596	2.4156E-05	-0.24687	-0.00010177	-0.18827	-7.7615E-05	412.2427948007105	24.979	0.26197	24.979	24.811	25.073	0					9	5	2	0	0	0	0.75243	1	8839	8839		26.796	0	1	122160			31436	9359	21719	21792	31833	31833					0.05284952791419073
QPRLVSLIK	9	Unmodified	_QPRLVSLIK_					0	0	0			REV__ARHGEF18-MAPKAP1|1|fusion	REV__ARHGEF18-MAPKAP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.8973388671875	3	351.897481	1052.67061	0.49436	0.00017397	-0.76273	-0.0002684	-0.26837	-9.4438E-05	351.89728677870977	13.345	0.3827	13.345	13.034	13.417	0					19	10	3	0	0	0	0.44593	1	3023	3023		37.812	1.3648	1	203660	+		31437	12214	21720	21793	31834	31834					0.1463858801932929
QPSEMGGQQS	10	Unmodified	_QPSEMGGQQS_					0	0	0			REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7220458984375	2	524.721838	1047.42912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.195	1	13.195	12.695	13.695	0								0	0	0	0.4201	1	2574	2574		18.262	0.89712	1		+		31438	13391	21721	21794	31835	31835					-0.09269435469923337
QPSNGELKK	9	Unmodified	_QPSNGELKK_					0	0	0			REV__ENST00000592971.1_1_19:16238799-16243111:+|nuORF	REV__ENST00000592971.1_1_19:16238799-16243111:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.77484130859375	2	500.774731	999.534909	-1.0881	-0.00054487	1.5698	0.00078613	0.48176	0.00024125	500.7758550175105	15.492	0.14753	15.492	15.412	15.56	0					6	4	2	0	0	0	0.1424	1	3563	3563		69.628	7.5202	1	104700	+		31439	16190	21722	21795	31836	31836					0.03512268437862076
QPSPAPTPTV	10	Unmodified	_QPSPAPTPTV_					0	0	0		BACH2|p.A322V|1|0.32|ENSG00000112182|chr6:89951141-89951141|G/A|missense_variant	BACH2|p.A322V|1|0.32|ENSG00000112182|chr6:89951141-89951141|G/A|missense_variant	BACH2|p.A322V|1|0.32|ENSG00000112182|chr6:89951141-89951141|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.26531982421875	2	497.763832	993.513111	2.914	0.0014505	-2.9175	-0.0014522	-0.003457	-1.7208E-06	497.76248653786706	43.142	0.38339	43.142	42.946	43.329	0					25	12	3	0	0	0	0.43008	1	17230	17230		52.937	0	1	516410			31440	272	21723	21796	31837	31837					0.016094636892717062
QPSPLPKQL	9	Unmodified	_QPSPLPKQL_					0	0	0		ENST00000472605.1_1_9:35810632-35811933:-|nuORF	ENST00000472605.1_1_9:35810632-35811933:-|nuORF	ENST00000472605.1_1_9:35810632-35811933:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.29779052734375	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.768	1	26.768	26.268	27.268	0								0	0	0	0.30504	1	8667	8667		34.173	2.2177	1				31441	9868	21724	21797	31838	31838					0.0781033333993264
QPSRGTQKFFQ	11	Unmodified	_QPSRGTQKFFQ_					0	0	0			REV__nc|ENSG00000148541|Q8NE31-3|FAM13C	REV__nc|ENSG00000148541|Q8NE31-3|FAM13C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.9002990722656	3	441.898321	1322.67313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.788	1	13.788	13.288	14.288	0								0	0	0	0.42696	1	3285	3285		31.068	6.8363	1		+		31442	15390	21725	21798	31839	31839					0.024703916863245468
QPSTIATSM	9	Unmodified	_QPSTIATSM_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2286071777344	2	468.228768	934.442982	0.8432	0.00039481	-0.91168	-0.00042687	-0.068479	-3.2064E-05	468.2283613081875	32.649	0.33018	32.649	32.525	32.855	0					23	13	2	0	0	0	0.055856	1	10540	10540		93.195	19.221	1	80827			31443	11785	21726	21799	31840	31840					-0.026861579708338468
QPSTIATSM	9	Unmodified	_QPSTIATSM_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.22900390625	2	468.228768	934.442982	0.3574	0.00016735	-0.37877	-0.00017735	-0.021366	-1.0004E-05	468.22863856087355	32.962	0.37564	32.962	32.798	33.173	0					25	10	3	0	0	0	0.01768	1	12105	12105		125.81	15.477	1	602340			31444	11785	21726	21799	31841	31841					-0.026861579708338468
QPSTIATSM	9	Unmodified	_QPSTIATSM_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2286071777344	2	468.228768	934.442982	-0.12896	-6.0384E-05	-0.59197	-0.00027718	-0.72093	-0.00033756	468.2285983300186	32.978	0.43343	32.978	32.77	33.203	0					30	10	4	0	0	0	0.028876	1	12510	12510		110.12	3.7047	1	972860			31445	11785	21726	21799	31842	31842					-0.026861579708338468
QPSTSIWEC	9	Unmodified	_QPSTSIWEC_					0	0	0		nc|ENSG00000189319|Q14153-2|FAM53B;ENST00000494792.1_1_10:126307332-126395327:-|nuORF;ENSG00000189319|ENST00000337318|FAM53B	nc|ENSG00000189319|Q14153-2|FAM53B	nc|ENSG00000189319|Q14153-2|FAM53B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7313232421875	2	525.731674	1049.4488	0.97715	0.00051372	-0.59213	-0.0003113	0.38502	0.00020242	525.7314073489613	30.872	1.3656	30.872	29.916	31.281	0					42	30	3	0	0	0	0.33044	1	11496	11496		47.657	18.508	1	232130			31446	7314	21727	21800	31843	31843					-0.07395059459167896
QPSVSLRDF	9	Unmodified	_QPSVSLRDF_					0	0	0		nc|ENSG00000066697|Q96H12-2|MSANTD3;MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant;ENSG00000066697|ENST00000395067|MSANTD3	nc|ENSG00000066697|Q96H12-2|MSANTD3	nc|ENSG00000066697|Q96H12-2|MSANTD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7745971679688	2	524.774731	1047.53491	0.54092	0.00028386	-0.088225	-4.6298E-05	0.45269	0.00023756	524.7749174615393	33.509	0.31932	33.509	33.348	33.667	0					12	6	3	0	0	0	0.25716	1	12733	12733		54.776	3.4409	1	355980			31447	1395	21728	21801	31844	31844					0.013042684378660852
QPSVTGSQQG	10	Unmodified	_QPSVTGSQQG_					0	0	0			REV__ENSG00000196912|ENST00000359901|ANKRD36B	REV__ENSG00000196912|ENST00000359901|ANKRD36B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7391357421875	2	494.738345	987.462138	-0.75617	-0.0003741	2.9618	0.0014653	2.2056	0.0010912	494.73974851220885	16.405	0.16788	16.405	16.347	16.515	0					7	3	3	0	0	0	0.70877	1	4720	4720		20.947	0.4651	1	163140	+		31448	17291	21729	21802	31845	31845					-0.032094853555577174
QPSWGVDPK	9	Unmodified	_QPSWGVDPK_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2553405761719	2	507.256174	1012.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.808	1	20.808	20.308	21.308	0								0	0	0	0.38667	1	5874	5874		14.865	0	1				31449	3768	21730	21803	31846	31846					-0.007954031079066226
QPSYRPRSY	9	Unmodified	_QPSYRPRSY_					0	0	0			REV__MSH5|p.A688Tfs*25|1|0.07|ENSG00000204410|chr6:31761495-31761496|-/ACACA|frameshift_variant	REV__MSH5|p.A688Tfs*25|1|0.07|ENSG00000204410|chr6:31761495-31761496|-/ACACA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.2931518554688	2	577.291079	1152.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.692	1	10.692	10.192	11.192	0								0	0	0	0.19616	1	2078	2078		62.107	16.155	1		+		31450	17484	21731	21804	31847	31847					-0.0025752443928013236
QPTHPLNTF	9	Unmodified	_QPTHPLNTF_					0	0	0			REV__DHX15|p.R126Q|1|0.04|ENSG00000109606|chr4:24576373-24576373|C/T|missense_variant	REV__DHX15|p.R126Q|1|0.04|ENSG00000109606|chr4:24576373-24576373|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7693481445312	2	527.769448	1053.52434	0.26761	0.00014124	0.51937	0.00027411	0.78697	0.00041534	527.769719169472	35.219	0.1441	35.219	35.149	35.293	0					12	6	3	0	0	0	0.47473	1	11901	11901		35.152	0	1	121760	+		31451	12700	21732	21805	31848	31848					-0.00027714216571439465
QPTIQIELRQ	10	Unmodified	_QPTIQIELRQ_					0	0	0		ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.3486328125	2	613.348594	1224.68264	0.38861	0.00023835	-0.27018	-0.00016571	0.11843	7.2642E-05	613.348427192624	30.152	0.23007	30.152	30.076	30.306	0					13	5	3	0	0	0	0.11137	1	11237	11237		101.46	28.581	1	398540			31452	7004	21733	21806	31849	31849					0.07928159971834248
QPTIQIELRQ	10	Unmodified	_QPTIQIELRQ_					0	0	0		ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.2339782714844	3	409.234822	1224.68264	-0.51431	-0.00021048	0.29211	0.00011954	-0.2222	-9.0932E-05	409.23489200611664	30.537	0.40469	30.537	30.393	30.797	0					21	8	3	0	0	0	0.4737	1	11308	11308		48.188	8.3148	1	1539300			31453	7004	21733	21806	31850	31850					0.07928159971834248
QPTQPSMTPT	10	Unmodified	_QPTQPSMTPT_					0	0	0			REV__nc|ENSG00000071054|O95819-6|MAP4K4	REV__nc|ENSG00000071054|O95819-6|MAP4K4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2565307617188	2	544.258056	1086.50156	1.9799	0.0010776	-3.2037	-0.0017437	-1.2239	-0.0006661	544.2564214871283	24.471	0.31249	24.471	24.364	24.676	0					14	6	3	0	0	0	0.43008	1	8485	8485		52.937	1.6012	1	748480	+		31454	13185	21734	21807	31851	31851					-0.03823101396369566
QPTVPRQNSAG	11	Unmodified	_QPTVPRQNSAG_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.2987670898438	2	577.799269	1153.58398	0.14314	8.2705E-05	-2.5227	-0.0014576	-2.3796	-0.0013749	577.7977817375964	39.447	0.1956	39.447	39.348	39.543	0					7	4	2	0	0	0	0.38515	1	15582	15582		53.089	0.15226	1	78539			31455	4116	21735	21808	31852	31852					0.013335567268086379
QPTVTIKVY	9	Unmodified	_QPTVTIKVY_					0	0	0		HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.80615234375	2	524.8055	1047.59645	1.8599	0.00097609	-0.90138	-0.00047305	0.95852	0.00050303	524.8050889827913	36.327	0.47468	36.327	36.211	36.685	0					29	13	3	0	0	0	0.099922	1	13683	13683		79.451	18.479	1	329200			31456	1211	21736	21809	31853	31853					0.07455200137133033
QPTYLARV	8	Unmodified	_QPTYLARV_					0	0	0		nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10;ABCC10|p.Q583Rfs*41|1|0.34|ENSG00000124574|chr6:43435885-43435885|C/-|frameshift_variant;ABCC10|p.L662Cfs*38|1|0.25|ENSG00000124574|chr6:43438647-43438647|G/-|frameshift_variant	nc|ENSG00000124574|Q5T3U5-2|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2689514160156	2	474.269084	946.523616	-0.48289	-0.00022902	0.20729	9.831E-05	-0.2756	-0.00013071	474.2691776680825	21.255	0.35509	21.255	21.163	21.518	0					14	8	3	0	0	0	0.3961	1	6718	6718		71.296	7.9894	1	877180			31457	3385	21737	21810	31854	31854					0.04821491134373446
QPVDEIRNY	9	Unmodified	_QPVDEIRNY_					0	0	0		ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ANO9|p.D688Ifs*44|1|0.15|ENSG00000185101|chr11:418789-418789|G/-|frameshift_variant;ENSG00000185101|ENST00000332826|ANO9	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.2826538085938	2	567.28292	1132.55129	0.80147	0.00045466	-0.89591	-0.00050823	-0.094438	-5.3573E-05	567.2820961359068	31.771	0.20453	31.771	31.622	31.827	0					7	4	2	0	0	0	0.33044	1	12026	12026		47.657	1.6851	1	54395			31458	167	21738	21811	31855	31855					-0.009686503960438131
QPVKDQLERL	10	Unmodified	_QPVKDQLERL_					0	0	0			REV__ENST00000557120.5_1_14:68086664-68113456:+|nuORF	REV__ENST00000557120.5_1_14:68086664-68113456:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	613.3486938476562	2	613.348594	1224.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.962	1	29.962	29.462	30.462	0								0	0	0	0.40634	1	9798	9798		37.812	21.094	1		+		31459	13304	21739	21812	31856	31856					0.07928159971856985
QPVKSFPTM	9	Unmodified	_QPVKSFPTM_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7711181640625	2	517.770603	1033.52665	1.3866	0.00071792	-0.63261	-0.00032755	0.75395	0.00039037	517.7704696462978	33.262	0.41152	33.262	33.131	33.543	0					33	15	4	0	0	0	0.53083	1	10784	10784		29.15	2.3535	1	260020			31460	5746	21740	21813	31857	31857					0.011229981968654101
QPVKSFPTM	9	Unmodified	_QPVKSFPTM_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.771240234375	2	517.770603	1033.52665	1.3196	0.00068322	-0.62004	-0.00032104	0.69951	0.00036218	518.2717850645719	33.5	0.63021	33.5	33.379	34.009	0					45	16	3	0	0	0	0.47038	1	12384	12384		35.618	8.8222	1	1654000			31461	5746	21740	21813	31858	31858					0.011229981968654101
QPVKSFPTM	9	Unmodified	_QPVKSFPTM_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2728271484375	2	517.770603	1033.52665	0.24181	0.0001252	0.15132	7.8349E-05	0.39313	0.00020355	517.7706249702231	33.458	0.57563	33.458	33.3	33.876	0					34	12	4	0	0	0	0.33044	1	12685	12685		47.657	15.702	1	1902900			31462	5746	21740	21813	31859	31859					0.011229981968654101
QPVKVLGENY	10	Unmodified	_QPVKVLGENY_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.81103515625	2	573.811313	1145.60807	1.4737	0.00084562	-1.6751	-0.00096121	-0.20146	-0.0001156	573.8102702641905	33.39	0.12972	33.39	33.313	33.442	0					7	4	2	0	0	0	0.65051	1	10856	10856		28.081	6.1216	1	122330			31463	2556	21741	21814	31860	31860					0.04109397160482331
QPVKVLGENY	10	Unmodified	_QPVKVLGENY_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.8114013671875	2	573.811313	1145.60807	0.0674	3.8675E-05	0.61205	0.0003512	0.67945	0.00038987	573.8115002629042	33.446	0.18299	33.446	33.361	33.544	0					15	7	3	0	0	0	0.56931	1	11214	11214		37.812	3.639	1	199370			31464	2556	21741	21814	31861	31861					0.04109397160482331
QPVKVLGENY	10	Unmodified	_QPVKVLGENY_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.8117065429688	2	573.811313	1145.60807	1.9864	0.0011398	-1.174	-0.00067363	0.81243	0.00046618	573.8104884663123	33.61	0.16895	33.61	33.521	33.69	0					8	4	2	0	0	0	0.2538	1	12887	12887		72.879	5.3856	1	1085100			31465	2556	21741	21814	31862	31862					0.04109397160482331
QPVKVLGENY	10	Unmodified	_QPVKVLGENY_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8114624023438	2	573.811313	1145.60807	1.6653	0.00095554	-1.1409	-0.00065464	0.52439	0.0003009	573.81065253841	33.541	0.21629	33.541	33.483	33.7	0					12	4	3	0	0	0	0.52275	1	12772	12772		42.864	12.361	1	1384200			31466	2556	21741	21814	31863	31863					0.04109397160482331
QPVKVRVSY	9	Unmodified	_QPVKVRVSY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3173217773438	2	538.316566	1074.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.498	1	25.498	24.998	25.998	0								0	0	0	0.36359	1	8117	8117		20.947	2.6848	1				31467	6476	21742	21815	31864	31864					0.08425424605570697
QPVKVRVSY	9	Unmodified	_QPVKVRVSY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3167114257812	2	538.316566	1074.61858	2.021	0.0010879	-1.3801	-0.00074293	0.64092	0.00034502	538.3158623058764	25.608	0.22028	25.608	25.498	25.718	0					9	4	3	0	0	0	0.46345	1	8979	8979		36.447	17.343	1	612090			31468	6476	21742	21815	31865	31865					0.08425424605570697
QPVLPQNIV	9	Unmodified	_QPVLPQNIV_					0	0	0			REV__NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant	REV__NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2975158691406	2	504.297842	1006.58113	0.12024	6.0636E-05	0.67147	0.00033862	0.79171	0.00039926	504.29814123753306	23.951	1.5687	23.951	22.911	24.48	0					51	37	2	0	0	0	0.35045	1	7278	7278		45.952	8.7928	1	127490	+		31469	17592	21743	21816	31866	31866					0.07810333339944009
QPVSDAKVY	9	Unmodified	_QPVSDAKVY_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7640686035156	2	503.763832	1005.51311	0.63014	0.00031744	-0.78611	-0.00039601	-0.15597	-7.8573E-05	503.7634281956556	25.217	0.28716	25.217	25.074	25.362	0					17	6	4	0	0	0	0.33044	1	8555	8555		47.657	1.7054	1	653190			31470	4705	21744	21817	31867	31867					0.010574636892783928
QPVSGLPI	8	Unmodified	_QPVSGLPI_					0	0	0		ENSG00000153930|ENST00000682825|ANKFN1	ENSG00000153930|ENST00000682825|ANKFN1	ENSG00000153930|ENST00000682825|ANKFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.7394104003906	2	405.739628	809.464704	0.66138	0.00026835	0.1084	4.3981E-05	0.76978	0.00031233	405.739570747406	41.92	0.14565	41.92	41.848	41.994	0					6	4	2	0	0	0	0.5676	1	16708	16708		53.351	7.3995	1	30847			31471	5065	21745	21818	31868	31868					0.05235014840047825
QPVSQPLTY	9	Unmodified	_QPVSQPLTY_					0	0	0		nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7715454101562	2	516.771657	1031.52876	1.2632	0.00065278	-1.1204	-0.00057898	0.14281	7.3798E-05	516.7710751386263	36.639	0.45469	36.639	36.458	36.913	0					23	12	2	0	0	0	0.21263	1	13795	13795		60.118	15.741	1	783870			31472	6647	21746	21819	31869	31869					0.014257502063401262
QPVSQPLTY	9	Unmodified	_QPVSQPLTY_					0	0	0		nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2734985351562	2	516.771657	1031.52876	1.1752	0.00060731	-0.67943	-0.00035111	0.49576	0.0002562	516.7715031634738	36.387	0.22923	36.387	36.282	36.511	0					17	10	2	0	0	0	0.16002	1	13007	13007		66.429	5.4573	1	77659			31473	6647	21746	21819	31870	31870					0.014257502063401262
QPWNHGETF	9	Unmodified	_QPWNHGETF_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.2489624023438	2	558.24888	1114.48321	1.1177	0.00062393	-0.35766	-0.00019966	0.76	0.00042427	558.2485726282807	33.455	1.1133	33.455	33.218	34.331	0					92	32	5	0	0	0	0.45358	1	11682	11682		37.159	6.6555	1	3326400			31474	11747	21747	21820	31871	31871					-0.06945475256065947
QPWNHGETF	9	Unmodified	_QPWNHGETF_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2493896484375	2	558.24888	1114.48321	1.8252	0.0010189	-1.3151	-0.00073416	0.5101	0.00028476	558.2479949174129	33.541	3.4458	33.541	33.332	36.778	0					179	70	3	0	0	0	0.035062	1	12723	12723		104.06	41.949	1	25614000			31475	11747	21747	21820	31872	31872					-0.06945475256065947
QPWPQFTA	8	Unmodified	_QPWPQFTA_					0	0	0			REV__ENST00000555706.5_1_14:100531766-100540844:+|nuORF	REV__ENST00000555706.5_1_14:100531766-100540844:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7402038574219	2	487.74016	973.465767	-0.70441	-0.00034357	0.6769	0.00033015	-0.02751	-1.3418E-05	487.74055986894746	13.501	0.28087	13.501	13.406	13.687	0					18	6	4	0	0	0	0.75243	1	3287	3287		26.796	3.7536	1	7626900	+		31476	20246	21748	21821	31873	31873					-0.022027707910638128
QPWPQGSALI	10	Unmodified	_QPWPQGSALI_					0	0	0			REV__ENST00000526769.3_1_11:6743038-6767630:-|nuORF	REV__ENST00000526769.3_1_11:6743038-6767630:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.79248046875	2	548.792924	1095.57129	0.27849	0.00015284	-2.2928	-0.0012583	-2.0143	-0.0011054	548.7918381544698	10.58	0.069353	10.58	10.534	10.603	0					5	3	2	0	0	0	0.58189	1	2041	2041		36.447	3.6343	1	76644	+		31477	20003	21749	21822	31874	31874					0.027331453345595946
QPYDSRRVLY	10	Unmodified	_QPYDSRRVLY_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.8944091796875	3	432.894688	1295.66223	-0.49013	-0.00021217	0.12787	5.5354E-05	-0.36226	-0.00015682	432.89459610955976	28.917	0.51624	28.917	28.707	29.224	0					15	10	2	0	0	0	0.536	1	10548	10548		41.427	18.049	1	274450			31478	4488	21750	21823	31875	31875					0.026229893120444103
QPYLPLPE	8	Unmodified	_QPYLPLPE_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB8|p.G781Wfs*9|1|0.43|ENSG00000120322|chr5:141180370-141180371|-/T|frameshift_variant;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000120322|ENST00000239444|PCDHB8;PCDHB15|p.A676V|1|0.38|ENSG00000113248|chr5:141247605-141247605|C/T|missense_variant;ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000113248|ENST00000231173|PCDHB15;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000120328|ENST00000239450|PCDHB12;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000113248|ENST00000231173|PCDHB15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7589416503906	2	478.758018	955.501483	-0.034026	-1.629E-05	1.4756	0.00070643	1.4415	0.00069014	478.7587107510184	15.571	0.13581	15.571	15.512	15.648	0					8	5	2	0	0	0	0.8006	1	3406	3406		20.482	0	1	276600			31479	2788;2784;2785;2786;3167	21751	21824	31876	31876					0.021952666659558417
QPYQIPITG	9	Unmodified	_QPYQIPITG_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7749328613281	2	508.7742	1015.53385	-0.54729	-0.00027844	1.1964	0.00060871	0.64914	0.00033026	508.77462938345315	27.019	0.20864	27.019	26.963	27.171	0					9	7	2	0	0	0	0.45358	1	8571	8571		37.159	0	1	130620			31480	4447	21752	21825	31877	31877					0.026700540689603258
QPYQTSLVI	9	Unmodified	_QPYQTSLVI_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2903442382812	2	524.787307	1047.56006	1.8734	0.00098313	-1.0035	-0.00052665	0.86985	0.00045648	525.2891598437332	20.952	0.17645	20.952	20.848	21.025	0					10	4	3	0	0	0	0.48389	1	6608	6608		34.173	0	1	227850			31481	2820	21753	21826	31878	31878					0.038183232404207956
QPYTDGVRM	9	Unmodified	_QPYTDGVRM_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.75341796875	2	533.752941	1065.49133	2.047	0.0010926	-0.95597	-0.00051025	1.091	0.00058232	533.7525905667445	30.085	0.18872	30.085	29.986	30.175	0					10	4	3	0	0	0	0.41113	1	10190	10190		40.778	11.608	1	219680			31482	6450	21754	21827	31879	31879					-0.038796643309296996
QPYWAAGPGW	10	Unmodified	_QPYWAAGPGW_					0	0	0			REV__ENST00000497389.6_1_10:46918355-46938364:+|nuORF	REV__ENST00000497389.6_1_10:46918355-46938364:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.2659912109375	2	566.764166	1131.51378	0.26083	0.00014783	0.53124	0.00030109	0.79207	0.00044892	566.7645197220785	27.889	0.21462	27.889	27.781	27.996	0					9	4	3	0	0	0	0.68218	1	10145	10145		24.203	24.203	1	554550	+		31483	14330	21755	21828	31880	31880					-0.04671696871014319
QQAAKAGVKK	10	Unmodified	_QQAAKAGVKK_					0	0	0			REV__RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant	REV__RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.814208984375	2	514.81419	1027.61383	0.6694	0.00034462	-0.12298	-6.3311E-05	0.54642	0.0002813	514.8141430278773	13.046	0.25031	13.046	12.921	13.171	0					30	12	4	0	0	0	0.46215	1	2572	2572		49.442	1.7842	1	1338000	+		31484	17277	21756	21829	31881	31881					0.1011254046279646
QQAALDPALKQ	11	Unmodified	_QQAALDPALKQ_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.8267211914062	2	591.827495	1181.64044	3.5013	0.0020722	-2.3609	-0.0013973	1.1404	0.00067492	592.3276804253616	14.865	0.070516	14.865	14.801	14.872	0					4	2	2	0	0	0	0.21666	1	3289	3289		81.525	5.3553	1	49974			31485	720	21757	21830	31882	31882					0.05688184563427967
QQAAPAEGAL	10	Unmodified	_QQAAPAEGAL_					0	0	0			REV__nc|ENSG00000118557|Q8TBY8-1|PMFBP1	REV__nc|ENSG00000118557|Q8TBY8-1|PMFBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2454528808594	2	478.245806	954.47706	0.65251	0.00031206	-1.4395	-0.00068843	-0.78697	-0.00037637	478.24526370661937	29.465	0.44572	29.465	29.321	29.767	0					22	9	4	0	0	0	0.47859	1	10924	10924		47.657	5.2612	1	1345800	+		31486	20991	21758	21831	31883	31883					-0.0019999348758119595
QQAEKALR	8	Unmodified	_QQAEKALR_					0	0	0			REV__nc|ENSG00000175137|Q7L8J4-2|SH3BP5L	REV__nc|ENSG00000175137|Q7L8J4-2|SH3BP5L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2696228027344	2	472.269616	942.524678	-0.36834	-0.00017395	-0.83955	-0.00039649	-1.2079	-0.00057045	472.2695056312434	18.752	0.18981	18.752	18.678	18.868	0					7	5	2	0	0	0	0.64096	1	4713	4713		42.474	0	1	279170	+		31487	16605	21759	21832	31884	31884					0.05111705503270514
QQAGARKKEL	10	Unmodified	_QQAGARKKEL_					0	0	0		ENST00000307403.6_1_7:155532339-155538302:+|nuORF;RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant;RBM33|p.G1030Afs*52|1|0.29|ENSG00000184863|chr7:155763915-155763915|G/-|frameshift_variant;RBM33|p.L1031Pfs*109|1|0.35|ENSG00000184863|chr7:155763914-155763915|-/G|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.2044677734375	3	376.887645	1127.64111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.946	1	17.946	17.446	18.446	0								0	0	0	0.41137	1	4583	4583		27.047	1.9213	1				31488	7039	21760	21833	31885	31885					0.08239024003182749
QQAMRYLR	8	Unmodified	_QQAMRYLR_					0	0	0		STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000130052|Q92502|STARD8;STARD8|p.L976Afs*8|1|0.27|ENSG00000130052|chrX:68724090-68724091|-/G|frameshift_variant;ENSG00000130052|ENST00000374599|STARD8;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2850341796875	2	533.284743	1064.55493	1.7368	0.00092622	-0.93227	-0.00049717	0.80454	0.00042905	533.2844780393735	25.877	0.34595	25.877	25.738	26.084	0					11	5	3	0	0	0	0.52345	1	9209	9209		57.811	1.0902	1	1217800			31489	5723;3618	21761	21834	31886	31886					0.02523740896799609
QQCQKKSR	8	Unmodified	_QQCQKKSR_					0	0	0		OAS2|p.I214Sfs*41|1|0.33|ENSG00000111335|chr12:112997526-112997526|A/-|frameshift_variant	OAS2|p.I214Sfs*41|1|0.33|ENSG00000111335|chr12:112997526-112997526|A/-|frameshift_variant	OAS2|p.I214Sfs*41|1|0.33|ENSG00000111335|chr12:112997526-112997526|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2664489746094	2	503.26655	1004.51855	-0.064505	-3.2463E-05	-1.0174	-0.000512	-1.0819	-0.00054447	503.2664122962553	16.272	0.22685	16.272	16.18	16.407	0					11	5	3	0	0	0	0.49887	1	4378	4378		60.294	0	1	849520			31490	11868	21762	21835	31887	31887					0.016468640001107815
QQEFHSQQ	8	Unmodified	_QQEFHSQQ_					0	0	0			REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.23291015625	2	516.230687	1030.44682	3.2792	0.0016928	1.4967	0.00077264	4.7759	0.0024655	516.2314719323218	16.673	0.21081	16.673	16.617	16.828	0					12	4	3	0	0	0	0.65148	1	4674	4674		40.778	3.6191	1	1050100	+		31491	17080	21763	21836	31888	31888					-0.06718352152756779
QQEFLSMKK	9	Unmodified	_QQEFLSMKK_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7982788085938	2	569.799891	1137.58523	-1.3377	-0.00076222	-2.8667	-0.0016334	-4.2044	-0.0023957	569.7985412915987	15.689	0.079447	15.689	15.639	15.719	0					6	3	2	0	0	0	0.13267	1	3565	3565		71.877	0	1	134700			31492	9589	21764	21837	31889	31889					0.021940547713484193
QQEIINLGR	9	Unmodified	_QQEIINLGR_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.8020629882812	2	535.80128	1069.58801	3.36	0.0018003	-0.75426	-0.00040413	2.6058	0.0013962	535.8009880288408	11.718	0.062395	11.718	11.68	11.743	0					5	3	2	0	0	0	0.14603	1	2332	2332		68.787	2.3575	1	78403	+		31493	21026	21765	21838	31890	31890					0.05599646220525756
QQELALAQQ	9	Unmodified	_QQELALAQQ_					0	0	0			REV__ENST00000475407.5_2_9:127642811-127683993:-|nuORF	REV__ENST00000475407.5_2_9:127642811-127683993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7720947265625	2	514.772188	1027.52982	1.0586	0.00054496	0.28647	0.00014747	1.3451	0.00069243	514.7722106249398	26.889	0.37589	26.889	26.704	27.079	0					19	9	3	0	0	0	0.44593	1	8692	8692		37.812	0	1	335750	+		31494	14895	21766	21839	31891	31891					0.01715964575214457
QQELYLRIV	9	Unmodified	_QQELYLRIV_					0	0	0			REV__ENSG00000130340|ENST00000392185|SNX9	REV__ENSG00000130340|ENST00000392185|SNX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.333251953125	2	581.334956	1160.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.037	1	13.037	12.537	13.537	0								0	0	0	0.38913	1	2877	2877		14.137	0	1		+		31495	14575	21767	21840	31892	31892					0.08145676431445281
QQEPMGLLG	9	Unmodified	_QQEPMGLLG_					0	0	0			REV__ENST00000549063.1_1_17:3579619-3585278:-|nuORF	REV__ENST00000549063.1_1_17:3579619-3585278:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7475891113281	2	486.744585	971.474617	2.5391	0.0012359	3.5714	0.0017384	6.1105	0.0029742	486.7468418679981	13.442	0.14563	13.442	13.366	13.511	0					9	3	4	0	0	0	0.22377	1	3120	3120		58.782	5.4305	1	529390	+		31496	13332	21768	21841	31893	31893					-0.012261652168604087
QQESLEQK	8	Unmodified	_QQESLEQK_					0	0	0		nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B	nc|ENSG00000180777|Q9BXX2|ANKRD30B	nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.24786376953125	2	495.248546	988.482539	0.013747	6.808E-06	-0.57924	-0.00028687	-0.56549	-0.00028006	495.24790568822425	16.479	0.13801	16.479	16.411	16.549	0					6	4	2	0	0	0	0.61625	1	3765	3765		36.447	0	1	97553			31497	6816	21769	21842	31894	31894					-0.012163146957504978
QQESLNIWKSK	11	Unmodified	_QQESLNIWKSK_					0	0	0		ENST00000438469.2_1_1:146553889-146554591:-|nuORF	ENST00000438469.2_1_1:146553889-146554591:-|nuORF	ENST00000438469.2_1_1:146553889-146554591:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	680.864990234375	2	680.864608	1359.71466	1.4099	0.00095996	-0.78611	-0.00053523	0.62381	0.00042473	680.864241159939	23.836	0.17712	23.836	23.757	23.934	0					13	6	3	0	0	0	0.46959	1	7202	7202		46.457	0	1	147580			31498	9550	21770	21843	31895	31895					0.0491952765496535
QQETVTRASE	10	Unmodified	_QQETVTRASE_					0	0	0		ENST00000492324.1_1_5:133311599-133311641:-|nuORF	ENST00000492324.1_1_5:133311599-133311641:-|nuORF	ENST00000492324.1_1_5:133311599-133311641:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.7801513671875	2	574.780741	1147.54693	-0.10595	-6.0897E-05	-1.2786	-0.00073493	-1.3846	-0.00079583	574.7800820146239	14.453	0.17005	14.453	14.366	14.536	0					8	4	3	0	0	0	0.63224	1	3530	3530		30.318	3.2704	1	568620			31499	10079	21771	21844	31896	31896					-0.020941596096236026
QQFIQQTGT	9	Unmodified	_QQFIQQTGT_					0	0	0		nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7669067382812	2	525.764363	1049.51417	1.9428	0.0010215	2.6862	0.0014123	4.629	0.0024338	525.7657992745967	13.669	0.13056	13.669	13.624	13.755	0					5	3	2	0	0	0	0.16002	1	3176	3176		66.429	8.618	1	149770			31500	3297	21772	21845	31897	31897					-0.008603219417864238
QQFWAQQQ	8	Unmodified	_QQFWAQQQ_					0	0	0			REV__HELZ|p.R1514W|1|0.34|ENSG00000198265|chr17:67108676-67108676|G/A|missense_variant	REV__HELZ|p.R1514W|1|0.34|ENSG00000198265|chr17:67108676-67108676|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.25341796875	2	532.251423	1062.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.265	1	17.265	16.765	17.765	0								0	0	0	1.7419	1	5096	5096		85.359	0.44396	1		+		31501	20723	21773	21846	31898	31898					-0.04045171393431701
QQFWQVKPNKK	11	Unmodified	_QQFWQVKPNKK_					0	0	0			REV__ENST00000441747.6_1_19:1482426-1490130:-|nuORF	REV__ENST00000441747.6_1_19:1482426-1490130:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.60345458984375	3	477.601616	1429.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.21	1	27.21	26.71	27.71	0								0	0	0	0.32536	1	9478	9478		48.602	7.4926	1		+		31502	19243	21774	21847	31899	31899					0.08531817025505006
QQGKTQVL	8	Unmodified	_QQGKTQVL_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2584228515625	2	451.258717	900.50288	-0.50026	-0.00022575	-0.0063181	-2.8511E-06	-0.50658	-0.0002286	451.25875357977503	28.727	0.29631	28.727	28.591	28.888	0					12	7	3	0	0	0	0.52345	1	10174	10174		57.811	0	1	224110			31503	5274	21775	21848	31900	31900					0.0486490075469419
QQHEGGVQEL	10	Unmodified	_QQHEGGVQEL_					0	0	0		ENSG00000090273|ENST00000321265|NUDC;NUDC-MICU1|1|fusion	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.7709350585938	2	562.770177	1123.5258	1.8648	0.0010495	0.80779	0.0004546	2.6726	0.0015041	562.7700617911319	26.436	0.66034	26.436	26.067	26.727	0					25	10	4	0	0	0	0.09653	1	9465	9465		96.034	5.4327	1	1163100			31504	1831	21776	21849	31901	31901					-0.031021249184504995
QQHPNYVP	8	Unmodified	_QQHPNYVP_					0	0	0			REV__ENST00000521120.1_1_12:50835423-50848201:+|nuORF	REV__ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7415466308594	2	491.740691	981.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.354	1	19.354	18.854	19.854	0								0	0	0	1.7419	1	4992	4992		21.702	1.7056	1		+		31505	15789	21777	21850	31902	31902					-0.024645564221486893
QQHTLPIGL	9	Unmodified	_QQHTLPIGL_					0	0	0			REV__FAM186A|p.P1269H|1|0.37|ENSG00000185958|chr12:50353026-50353026|G/T|missense_variant	REV__FAM186A|p.P1269H|1|0.37|ENSG00000185958|chr12:50353026-50353026|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7845153808594	2	503.787641	1005.56073	-0.061523	-3.0995E-05	-0.21288	-0.00010725	-0.27441	-0.00013824	503.7874035595443	21.442	1.9808	21.442	20.05	22.031	0					74	45	2	0	0	0	0.16002	1	6920	6920		66.429	15.094	1	743430	+		31506	20658	21778	21851	31903	31903					0.05817162680148158
QQHTLPIGL	9	Unmodified	_QQHTLPIGL_					0	0	0			REV__FAM186A|p.P1269H|1|0.37|ENSG00000185958|chr12:50353026-50353026|G/T|missense_variant	REV__FAM186A|p.P1269H|1|0.37|ENSG00000185958|chr12:50353026-50353026|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7874755859375	2	503.787641	1005.56073	-0.061352	-3.0908E-05	-0.26103	-0.0001315	-0.32238	-0.00016241	503.78745923519915	23.066	1.2792	23.066	21.984	23.263	0					52	30	2	0	0	0	0.1424	1	7546	7546		69.628	14.851	1	698840	+		31507	20658	21778	21851	31904	31904					0.05817162680148158
QQIGTAQKK	9	Unmodified	_QQIGTAQKK_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29046630859375	2	501.290548	1000.56654	1.1206	0.00056174	-0.82371	-0.00041292	0.29688	0.00014882	501.2905346901857	15.453	1.4553	15.453	15.195	16.65	0					90	29	5	0	0	0	0.063171	1	4422	4422		54.776	3.4409	1	136240000	+		31508	14199	21779	21852	31905	31905					0.06628261191804086
QQILVGKK	8	Unmodified	_QQILVGKK_					0	0	0			REV__SAGE1|p.V876G|1|0.26|ENSG00000181433|chrX:135912809-135912809|T/G|missense_variant	REV__SAGE1|p.V876G|1|0.26|ENSG00000181433|chrX:135912809-135912809|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2949523925781	2	457.295102	912.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.981	1	13.981	13.481	14.481	0								0	0	0	1.7419	1	3375	3375		76.847	8.3619	1		+		31509	21485	21780	21853	31906	31906					0.11586654548136721
QQIPQGLQK	9	Unmodified	_QQIPQGLQK_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2977905273438	2	520.298373	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.218	1	11.218	10.718	11.718	0								0	0	0	0.14517	1	2251	2251		60.972	23.16	1		+		31510	14054	21781	21854	31907	31907					0.064445477088384
QQKKKTAPA	9	Unmodified	_QQKKKTAPA_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.30078125	2	500.300916	998.587279	-0.44693	-0.0002236	0.69498	0.0003477	0.24805	0.0001241	500.301340848429	14.525	0.089659	14.525	14.475	14.565	0					7	4	2	0	0	0	0.30951	1	3083	3083		49.442	1.482	1	58847	+		31511	16582	21782	21855	31908	31908					0.08792851571456595
QQKQLTKQ	8	Unmodified	_QQKQLTKQ_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1	REV__nc|ENSG00000127603|Q9UPN3-4|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2908020019531	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.032	1	16.032	15.532	16.532	0								0	0	0	1.7419	1	3584	3584		27.882	0	1		+		31512	21013	21783	21856	31909	31909					0.06628261191804086
QQKREAERL	9	Unmodified	_QQKREAERL_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-2|KIF27	REV__nc|ENSG00000165115|Q86VH2-2|KIF27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.5510559082031	3	386.551033	1156.63127	3.5062	0.0013553	-3.8565	-0.0014907	-0.35029	-0.0001354	386.549562613582	14.023	0.043124	14.023	13.995	14.038	0					4	2	2	0	0	0	0.42902	1	2972	2972		39.253	7.723	1	30383	+		31513	16022	21784	21857	31910	31910					0.05921835997787639
QQKVALAKL	9	Unmodified	_QQKVALAKL_					0	0	0			REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B	REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8212890625	2	499.821484	997.628415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.243	1	32.243	31.743	32.743	0								0	0	0	0.28996	1	12236	12236		37.159	0	1		+		31514	17443	21785	21858	31911	31911					0.1295061261095043
QQLDPLRA	8	Unmodified	_QQLDPLRA_					0	0	0			REV__ENST00000601673.1_7:6523004-6523760:+|nuORF	REV__ENST00000601673.1_7:6523004-6523760:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.76397705078125	2	470.764166	939.513779	-1.3199	-0.00062136	0.82607	0.00038888	-0.49382	-0.00023247	470.76456805844504	16.512	0.68509	16.512	16.43	17.115	0					59	25	6	0	0	0	0.72381	1	4114	4114		30.504	1.3541	1	32075000	+		31515	20600	21786	21859	31912	31912					0.04160303128992382
QQLETVKR	8	Unmodified	_QQLETVKR_					0	0	0		ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2903747558594	2	501.290548	1000.56654	0.67836	0.00034006	-0.048789	-2.4458E-05	0.62957	0.0003156	501.2911070338343	15.537	2.0296	15.537	15.328	17.357	0					116	49	5	0	0	0	0.57171	1	4724	4724		60.972	11.53	1	171490000			31516	7766	21787	21860	31913	31913					0.06628261191804086
QQLHAAMSQ	9	Oxidation (M)	_QQLHAAM(Oxidation (M))SQ_		QQLHAAM(1)SQ		QQLHAAM(56)SQ	0	0	1		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1	ENSG00000131941|ENST00000254260|RHPN2	ENSG00000131941|ENST00000254260|RHPN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2427368164062	2	515.242741	1028.47093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.339	1	17.339	16.839	17.839	0								0	0	0	0.16453	1	4984	4984		56.434	10.462	1				31517	3751	21788	21861	31914	31914		157			-0.04216834990734242
QQLIGNILVQ	10	Unmodified	_QQLIGNILVQ_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.3348388671875	2	563.334956	1124.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.02	1	23.02	22.52	23.52	0								0	0	0	0.3598	1	6956	6956		21.96	4.4919	1		+		31518	15198	21789	21862	31915	31915					0.09801676431470696
QQLIQITS	8	Unmodified	_QQLIQITS_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;DDB1|p.A474T|1|0.14|ENSG00000167986|chr11:61314477-61314477|C/T|missense_variant	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.5577697753906	2	465.766374	929.518196	-0.1368	-6.3717E-05	-0.20304	-9.4567E-05	-0.33984	-0.00015828	465.7663501546051	14.655	0.20588	14.655	14.508	14.714	0					6	4	2	0	0	0	0.78142	1	3816	3816		23.042	0	1	144220			31519	6043	21790	21863	31916	31916					0.05061767551910634
QQLKTAVEE	9	Unmodified	_QQLKTAVEE_					0	0	0		VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant;ENSG00000075399|ENST00000389386|VPS9D1;nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant	VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2864990234375	2	523.279846	1044.54514	3.4158	0.0017874	-2.8967	-0.0015158	0.51912	0.00027165	523.2785488862829	32.951	0.54166	32.951	32.84	33.382	0					47	11	6	0	0	0	0.24095	1	12574	12574		56.721	0	1	35860000			31520	1539	21791	21864	31917	31917					0.02464831372435583
QQLNLNQQ	8	Unmodified	_QQLNLNQQ_					0	0	0			REV__ENST00000470928.3_1_1:167334720-167353117:+|nuORF	REV__ENST00000470928.3_1_1:167334720-167353117:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2572937011719	2	493.256705	984.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.859	1	11.859	11.359	12.359	0								0	0	0	1.7419	1	2383	2383		30.504	0	1		+		31521	15174	21792	21865	31918	31918					0.0059881126099980975
QQLQEQQQQL	10	Unmodified	_QQLQEQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.2177734375	3	424.217719	1269.63133	0.95248	0.00040406	-1.4478	-0.0006142	-0.49536	-0.00021014	424.21731607310676	28.084	0.1736	28.084	28.004	28.178	0					11	4	3	0	0	0	0.60281	1	9898	9898		33.922	0	1	346840	+		31522	17665	21793	21866	31919	31919					0.007297912071408064
QQLRGPERC	9	Unmodified	_QQLRGPERC_					0	0	0			REV__FUBP1|p.S11Lfs*43|2|0.23|ENSG00000162613|chr1:77978975-77978975|G/-|frameshift_variant	REV__FUBP1|p.S11Lfs*43|2|0.23|ENSG00000162613|chr1:77978975-77978975|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7774047851562	2	543.777282	1085.54001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.968	1	36.968	36.468	37.468	0								0	0	0	0.34598	1	13237	13237		19.104	0	1		+		31523	20683	21794	21867	31920	31920					0.0006624902882776951
QQLSFRLQ	8	Unmodified	_QQLSFRLQ_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2870788574219	2	510.285266	1018.55598	1.1691	0.00059656	1.8086	0.0009229	2.9777	0.0015195	510.2864504860118	19.592	0.11022	19.592	19.537	19.647	0					4	2	2	0	0	0	0.37144	1	5948	5948		63.306	6.5852	1	122470			31524	11590	21795	21868	31921	31921					0.047442785373846164
QQLSFRLSP	9	Unmodified	_QQLSFRLSP_					0	0	0		CDH12|p.F524L|1|0.2|ENSG00000154162|chr5:21760619-21760619|G/T|missense_variant	CDH12|p.F524L|1|0.2|ENSG00000154162|chr5:21760619-21760619|G/T|missense_variant	CDH12|p.F524L|1|0.2|ENSG00000154162|chr5:21760619-21760619|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3004150390625	2	538.298373	1074.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.77	1	17.77	17.27	18.27	0								0	0	0	0.14961	1	5188	5188		52.937	0	1				31525	447	21796	21869	31922	31922					0.047885477088584594
QQLSSIQKK	9	Unmodified	_QQLSSIQKK_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000038253	REV__CON__ENSEMBL:ENSBTAP00000038253	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.311767578125	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.157	1	20.157	19.657	20.657	0								0	0	0	0.14881	1	5614	5614		60.118	0.18749	1		+	+	31526	12580	21797	21870	31923	31923					0.08144816880326289
QQLSVARSL	9	Unmodified	_QQLSVARSL_					0	0	0			REV__ENST00000505571.5_1_5:78915459-78919324:+|nuORF	REV__ENST00000505571.5_1_5:78915459-78919324:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.29071044921875	2	501.290548	1000.56654	0.93489	0.00046865	-0.45763	-0.0002294	0.47726	0.00023925	501.29030363955496	48.138	0.5751	48.138	48.016	48.591	0					50	34	2	0	0	0	0.61124	1	18259	18259		18.262	0	1	84697	+		31527	15984	21798	21871	31924	31924					0.06628261191792717
QQLYSKLK	8	Unmodified	_QQLYSKLK_					0	0	0			REV__nc|ENSG00000164113|Q96M93-3|ADAD1	REV__nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29718017578125	2	504.297842	1006.58113	1.032	0.00052045	-0.62387	-0.00031462	0.40816	0.00020583	504.29796942997166	18.8	3.774	18.8	18.544	22.318	0					215	76	5	0	0	0	0.5535	1	6605	6605		54.776	0	1	661630000	+		31528	15965	21799	21872	31925	31925					0.07810333339944009
QQPILQMY	8	Unmodified	_QQPILQMY_					0	0	0			REV__ENST00000596424.1_1_19:50360315-50362048:+|nuORF	REV__ENST00000596424.1_1_19:50360315-50362048:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.7611083984375	2	510.762778	1019.511	-0.41977	-0.0002144	-0.19992	-0.00010211	-0.61969	-0.00031652	510.7622004934485	37.735	0.35948	37.735	37.649	38.008	0					22	19	2	0	0	0	0.61433	1	12741	12741		46.766	0.81448	1	124980	+		31529	13748	21800	21873	31926	31926					0.002027116798217321
QQPLQQGGDY	10	Unmodified	_QQPLQQGGDY_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.2681274414062	2	567.264727	1132.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.439	1	38.439	37.939	38.939	0								0	0	0	0.24873	1	15081	15081		58.23	8.7884	1				31530	3449	21801	21874	31927	31927					-0.04605527292756051
QQPPPPPPLR	10	Unmodified	_QQPPPPPPLR_					0	0	0		WASF3|p.P310Lfs*25|1|0.21|ENSG00000132970|chr13:26681262-26681262|C/-|frameshift_variant	WASF3|p.P310Lfs*25|1|0.21|ENSG00000132970|chr13:26681262-26681262|C/-|frameshift_variant	WASF3|p.P310Lfs*25|1|0.21|ENSG00000132970|chr13:26681262-26681262|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.2197570800781	3	376.217102	1125.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.734	1	45.734	45.234	46.234	0								0	0	0	0.40797	1	18323	18323		28.081	1.3886	1				31531	23109	21802	21875	31928	31928					0.07168826979818732
QQPPPTASP	9	Unmodified	_QQPPPTASP_					0	0	0			REV__ENST00000597336.1_1_19:40530250-40531035:-|nuORF	REV__ENST00000597336.1_1_19:40530250-40531035:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7351989746094	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.558	1	24.558	24.058	25.058	0								0	0	0	0.3368	1	7266	7266		27.882	2.4321	1		+		31532	16149	21803	21876	31929	31929					-0.008273785162828062
QQPPVAVPGG	10	Unmodified	_QQPPVAVPGG_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant;ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.27587890625	2	475.258717	948.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.298	1	31.298	30.798	31.798	0								0	0	0	0.33119	1	10361	10361		45.952	1.8352	1				31533	1238	21804	21877	31930	31930					0.026569007547209367
QQPSLQLSQ	9	Unmodified	_QQPSLQLSQ_					0	0	0		TRIM66|p.Q550Afs*26|1|0.4|ENSG00000166436|chr11:8640292-8640293|-/C|frameshift_variant;nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF;TRIM66|p.P964Qfs*4|1|0.37|ENSG00000166436|chr11:8621158-8621158|G/-|frameshift_variant;nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66	TRIM66|p.Q550Afs*26|1|0.4|ENSG00000166436|chr11:8640292-8640293|-/C|frameshift_variant	TRIM66|p.Q550Afs*26|1|0.4|ENSG00000166436|chr11:8640292-8640293|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2720947265625	2	514.772188	1027.52982	3.2373	0.0016665	2.2077	0.0011365	5.445	0.0028029	514.7721485933768	21.942	0.46349	21.942	21.807	22.27	0					19	9	4	0	0	0	0.36892	1	7173	7173		44.377	0.26039	1	1918100			31534	5901	21805	21878	31931	31931					0.017159645752371944
QQPSNYGPM	9	Unmodified	_QQPSNYGPM_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2251281738281	2	511.224017	1020.43348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.875	1	30.875	30.375	31.375	0								0	0	0	0.30504	1	9879	9879		34.173	2.2177	1				31535	3273	21806	21879	31932	31932					-0.07591926256350234
QQPSNYGPM	9	Unmodified	_QQPSNYGPM_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2243957519531	2	511.224017	1020.43348	0.40346	0.00020626	-0.16223	-8.2934E-05	0.24124	0.00012333	511.22401642892373	31.187	0.54151	31.187	30.997	31.538	0					25	12	3	0	0	0	0.27249	1	11709	11709		52.937	14.131	1	288900			31536	3273	21806	21879	31933	31933					-0.07591926256350234
QQPSNYGPM	9	Unmodified	_QQPSNYGPM_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.22412109375	2	511.224017	1020.43348	0.02062	1.0542E-05	0.0085671	4.3797E-06	0.029187	1.4921E-05	511.22410306728705	31.04	0.50779	31.04	30.929	31.437	0					26	10	3	0	0	0	0.19605	1	11570	11570		62.107	16.155	1	340640			31537	3273	21806	21879	31934	31934					-0.07591926256350234
QQPVEELVH	9	Unmodified	_QQPVEELVH_					0	0	0			REV__ENST00000455821.1_1_3:193975097-193975331:+|nuORF	REV__ENST00000455821.1_1_3:193975097-193975331:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7799682617188	2	539.780013	1077.54547	2.633	0.0014212	-1.9295	-0.0010415	0.70348	0.00037972	539.7789959522567	30.349	0.25669	30.349	30.238	30.494	0					17	9	2	0	0	0	0.61124	1	9652	9652		17.365	0.89182	1	226840	+		31538	19345	21807	21880	31935	31935					0.009802510922781948
QQQALALEQQ	10	Unmodified	_QQQALALEQQ_					0	0	0		ENST00000475407.5_2_9:127642811-127683993:-|nuORF;ENSG00000136935|ENST00000373555|GOLGA1	ENST00000475407.5_2_9:127642811-127683993:-|nuORF	ENST00000475407.5_2_9:127642811-127683993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.2043762207031	3	386.20341	1155.5884	3.5079	0.0013548	0.46224	0.00017852	3.9702	0.0015333	386.2034718733571	31.931	0.11602	31.931	31.861	31.977	0					10	4	3	0	0	0	0.7005	1	10612	10612		20.837	6.1435	1	85336			31539	4130	21808	21881	31936	31936					0.01683021149688102
QQQFAVKK	8	Unmodified	_QQQFAVKK_					0	0	0			REV__ENST00000515578.5_1_4:420284-429666:-|nuORF	REV__ENST00000515578.5_1_4:420284-429666:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7838439941406	2	488.782359	975.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.614	1	13.614	13.114	14.114	0								0	0	0	1.7419	1	3136	3136		68.485	0	1		+		31540	19913	21809	21882	31937	31937					0.06141180025713311
QQQILGVGGK	10	Unmodified	_QQQILGVGGK_					0	0	0			REV__TEX29|p.K53Nfs*83|1|0.1|ENSG00000153495|chr13:111328281-111328282|-/ACCTGGG|frameshift_variant	REV__TEX29|p.K53Nfs*83|1|0.1|ENSG00000153495|chr13:111328281-111328282|-/ACCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.8001098632812	2	514.298373	1026.58219	-0.18347	-9.4357E-05	0.70624	0.00036322	0.52278	0.00026886	514.2988862836918	19.699	0.13673	19.699	19.65	19.787	0					13	5	3	0	0	0	0.54197	1	5380	5380		40.778	1.5253	1	119890	+		31541	21633	21810	21883	31938	31938					0.0699654770885445
QQQINQQQ	8	Unmodified	_QQQINQQQ_					0	0	0		TOX3|p.L506P|1|0.3|ENSG00000103460|chr16:52439439-52439439|A/G|missense_variant;nc|ENSG00000103460|O15405-2|TOX3;ENSG00000103460|ENST00000219746|TOX3	TOX3|p.L506P|1|0.3|ENSG00000103460|chr16:52439439-52439439|A/G|missense_variant	TOX3|p.L506P|1|0.3|ENSG00000103460|chr16:52439439-52439439|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7509460449219	2	507.751787	1013.48902	-0.37984	-0.00019287	-1.3768	-0.00069905	-1.7566	-0.00089191	507.75122952047536	16.938	0.16109	16.938	16.835	16.996	0					5	3	2	0	0	0	0.79882	1	4957	4957		19.36	0	1	96828			31542	2241	21811	21884	31939	31939					-0.017183767443839315
QQQLALLAK	9	Unmodified	_QQQLALLAK_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.810791015625	2	506.811116	1011.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.18	1	18.18	17.68	18.68	0								0	0	0	0.3063	1	4487	4487		42.396	6.7778	1		+		31543	14454	21812	21885	31940	31940					0.10234022231270501
QQQLEKKLPV	10	Unmodified	_QQQLEKKLPV_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;ITSN1|p.P1076Tfs*2|1|0.25|ENSG00000205726|chr21:33826852-33826853|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;CON__ENSEMBL:ENSBTAP00000001528	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.861328125	2	605.861338	1209.70812	-0.49656	-0.00030085	0.70163	0.00042509	0.20507	0.00012424	605.8616804146267	28.523	0.2074	28.523	28.435	28.643	0					12	5	3	0	0	0	0.19191	1	10096	10096		80.455	5.4113	1	454510		+	31544	7757	21813	21886	31941	31941					0.11165634494250298
QQQLHIKA	8	Unmodified	_QQQLHIKA_					0	0	0			REV__LIMD1|p.G320Vfs*6|1|0.25|ENSG00000144791|chr3:45595833-45595833|G/-|frameshift_variant	REV__LIMD1|p.G320Vfs*6|1|0.25|ENSG00000144791|chr3:45595833-45595833|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2799072265625	2	483.279983	964.545414	-0.14892	-7.197E-05	0.24297	0.00011742	0.094045	4.545E-05	483.28001866980594	25.283	0.15194	25.283	25.181	25.333	0					5	3	2	0	0	0	0.51384	1	8631	8631		47.916	0	1	572110	+		31545	15244	21814	21887	31942	31942					0.06172295882936396
QQQLQPVAI	9	Unmodified	_QQQLQPVAI_					0	0	0			REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7945556640625	2	512.792924	1023.57129	-0.065908	-3.3797E-05	4.3188	0.0022146	4.2529	0.0021808	512.7947206210025	25.128	0.10936	25.128	25.077	25.186	0					5	3	2	0	0	0	0.5654	1	7524	7524		25.45	0	1	34370	+		31546	12294	21815	21888	31943	31943					0.0604514533456495
QQQQESAR	8	Unmodified	_QQQQESAR_					0	0	0		ENST00000416077.1_1_6:51274881-51275238:-|nuORF;nc|ENSG00000146457|Q15007-2|WTAP;ENSG00000146457|ENST00000621533|WTAP	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.73541259765625	2	487.736137	973.457721	-0.70353	-0.00034314	-0.62073	-0.00030275	-1.3243	-0.00064589	487.7358702855391	22.736	0.21713	22.736	22.628	22.845	0					7	4	2	0	0	0	0.76283	1	7751	7751		25.45	1.2474	1	462870			31547	4734	21816	21889	31944	31944					-0.030069497784666055
QQQQKSIAL	9	Unmodified	_QQQQKSIAL_					0	0	0		BHLHE40|p.I118S|1|0.25|ENSG00000134107|chr3:4981486-4981486|T/G|missense_variant	BHLHE40|p.I118S|1|0.25|ENSG00000134107|chr3:4981486-4981486|T/G|missense_variant	BHLHE40|p.I118S|1|0.25|ENSG00000134107|chr3:4981486-4981486|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2969360351562	2	522.29583	1042.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.998	1	15.998	15.498	16.498	0								0	0	0	0.088368	1	3698	3698		75.043	0	1				31548	296	21817	21890	31945	31945					0.057522438462456194
QQQQQKKT	8	Unmodified	_QQQQQKKT_					0	0	0			REV__ENST00000567272.1_1_6:126965256-126965442:+|nuORF	REV__ENST00000567272.1_1_6:126965256-126965442:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.77801513671875	2	508.777805	1015.54106	-0.075099	-3.8209E-05	0.25242	0.00012843	0.17732	9.0217E-05	508.7780493463999	11.911	0.073761	11.911	11.877	11.951	0					4	2	2	0	0	0	0.30437	1	2410	2410		82.305	0	1	136990	+		31549	16304	21818	21891	31946	31946					0.03390786669388035
QQRERVALEQR	11	Unmodified	_QQRERVALEQR_					0	0	0			REV__nc|ENSG00000166579|Q9GZM8-3|NDEL1	REV__nc|ENSG00000166579|Q9GZM8-3|NDEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	706.8899536132812	2	706.889481	1411.76441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.93	1	36.93	36.43	37.43	0								0	0	0	0.45674	1	13220	13220		22.58	0.89391	1		+		31550	16134	21819	21892	31947	31947					0.07499655383639947
QQRGISKR	8	Unmodified	_QQRGISKR_					0	0	0			REV__SCUBE1|p.G673Wfs*39|1|0.31|ENSG00000159307|chr22:43214126-43214127|-/A|frameshift_variant	REV__SCUBE1|p.G673Wfs*39|1|0.31|ENSG00000159307|chr22:43214126-43214127|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.789794921875	2	486.788507	971.562461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.512	1	19.512	19.012	20.012	0								0	0	0	1.7419	1	5298	5298		38.806	0	1		+		31551	15709	21820	21893	31948	31948					0.07554216488756538
QQRGLDAQTL	10	Unmodified	_QQRGLDAQTL_					0	0	0			REV__ENSG00000153531|ENST00000612156|ADPRHL1	REV__ENSG00000153531|ENST00000612156|ADPRHL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.3027954101562	2	565.301644	1128.58874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.609	1	19.609	19.109	20.109	0								0	0	0	0.34574	1	5359	5359		39.253	0	1		+		31552	15546	21821	21894	31949	31949					0.02958440869565493
QQRLLGEAPG	10	Unmodified	_QQRLLGEAPG_					0	0	0			REV__ENSG00000074201|ENST00000525428|CLNS1A	REV__ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.249755859375	2	534.793455	1067.57236	1.7857	0.000955	-1.116	-0.00059684	0.66972	0.00035816	534.7929403136297	12.674	0.22646	12.674	12.588	12.815	0					9	5	2	0	0	0	0.52707	1	2887	2887		42.396	3.59	1	2510500	+		31553	13215	21822	21895	31950	31950					0.041273597034887644
QQRLPIFK	8	Unmodified	_QQRLPIFK_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-4|DNAH12;DNAH12|p.L560*|1|0.37|ENSG00000174844|chr3:57472643-57472643|A/-|frameshift_variant;DNAH12|p.K1023Nfs*9|3|0.34|ENSG00000174844|chr3:57457919-57457919|T/-|frameshift_variant;DNAH12|p.E1339Gfs*6|1|0.27|ENSG00000174844|chr3:57446125-57446126|-/C|frameshift_variant;DNAH12|p.F1712Lfs*4|1|0.34|ENSG00000174844|chr3:57428681-57428681|A/-|frameshift_variant	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3134155273438	2	515.313826	1028.6131	0.1727	8.8994E-05	-0.8247	-0.00042498	-0.65201	-0.00033599	515.3133771315804	28.819	0.16631	28.819	28.746	28.912	0					8	5	2	0	0	0	0.59773	1	9037	9037		57.811	17.033	1	81482			31554	813	21823	21896	31951	31951					0.09993745813767418
QQRLVGGL	8	Unmodified	_QQRLVGGL_					0	0	0			REV__KLHL13|p.Y595Ifs*9|1|0.07|ENSG00000003096|chrX:117899094-117899094|C/-|frameshift_variant	REV__KLHL13|p.Y595Ifs*9|1|0.07|ENSG00000003096|chrX:117899094-117899094|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.7615051269531	2	435.761426	869.5083	0.22453	9.784E-05	-0.24356	-0.00010613	-0.019036	-8.2951E-06	435.7613496174781	17.999	0.31203	17.999	17.768	18.08	0					17	8	3	0	0	0	0.67475	1	4402	4402		37.028	2.8559	1	197760	+		31555	12818	21824	21897	31952	31952					0.06832624337198467
QQRQRQQQ	8	Unmodified	_QQRQRQQQ_					0	0	0		ENSG00000204442|ENST00000375915|NALF1;ENST00000512215.5_1_4:102268380-102268632:-|nuORF	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2935180664062	2	550.289402	1098.56425	3.7442	0.0020604	2.2145	0.0012186	5.9587	0.003279	550.2905482055293	31.594	0.96907	31.594	31.386	32.355	0					76	19	7	0	0	0	0.34985	1	11815	11815		76.847	1.8033	1	66105000			31556	7702	21825	21898	31953	31953					0.018912255067107253
QQRRLVAI	8	Unmodified	_QQRRLVAI_					0	0	0			REV__ENST00000251241.8_1_17:57648007-57650495:+|nuORF	REV__ENST00000251241.8_1_17:57648007-57650495:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.3101806640625	2	492.309075	982.603597	2.728	0.001343	-0.49743	-0.00024489	2.2305	0.0010981	492.3087966247599	44.536	0.1661	44.536	44.448	44.614	0					9	6	2	0	0	0	0.6282	1	17841	17841		44.531	44.531	1	61234	+		31557	12243	21826	21899	31954	31954					0.11159977528222953
QQRRNGSIEQ	10	Unmodified	_QQRRNGSIEQ_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	608.3145141601562	2	608.313074	1214.6116	2.9324	0.0017838	-0.50197	-0.00030536	2.4304	0.0014785	608.3127112870098	21.514	0.26643	21.514	21.404	21.67	0					18	5	5	0	0	0	0.14426	1	7025	7025		87.696	87.696	1	4937600	+		31558	21137	21827	21900	31955	31955					0.012874599870428938
QQSKSQKQ	8	Unmodified	_QQSKSQKQ_					0	0	0		SEL1L2|p.Y361Tfs*29|1|0.04|ENSG00000101251|chr20:13876061-13876061|A/-|frameshift_variant;nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	SEL1L2|p.Y361Tfs*29|1|0.04|ENSG00000101251|chr20:13876061-13876061|A/-|frameshift_variant	SEL1L2|p.Y361Tfs*29|1|0.04|ENSG00000101251|chr20:13876061-13876061|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.25665283203125	2	481.256705	960.498858	-0.29361	-0.0001413	0.044735	2.1529E-05	-0.24887	-0.00011977	481.25679919628027	11.628	0.071072	11.628	11.603	11.674	0					4	2	2	0	0	0	0.46013	1	2221	2221		64.207	3.2353	1	183420			31559	2105	21828	21901	31956	31956					0.01702811261009174
QQSPAPGISY	10	Unmodified	_QQSPAPGISY_					0	0	0			REV__ENSG00000078070|ENST00000265594|MCCC1	REV__ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.259765625	2	524.258914	1046.50327	0.092111	4.829E-05	0.84894	0.00044506	0.94105	0.00049335	524.2599431713942	15.529	0.33833	15.529	15.358	15.697	0					17	8	3	0	0	0	0.62235	1	4021	4021		31.53	4.7337	1	1216000	+		31560	13269	21829	21902	31957	31957					-0.018117243160759244
QQSPQPQE	8	Unmodified	_QQSPQPQE_					0	0	0			REV__ENSG00000236383|ENST00000636331|CCDC200	REV__ENSG00000236383|ENST00000636331|CCDC200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.221435546875	2	471.219788	940.425024	3.8209	0.0018005	-1.5681	-0.00073894	2.2528	0.0010616	471.2189456469367	19.792	0.29688	19.792	19.596	19.892	0					16	10	2	0	0	0	0.70598	1	5395	5395		32.812	0.85756	1	74196	+		31561	17663	21830	21903	31958	31958					-0.04757156901325743
QQSRAVQAK	9	Unmodified	_QQSRAVQAK_					0	0	0			REV__CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	REV__CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2860107421875	2	508.285797	1014.55704	1.1374	0.00057812	-0.85706	-0.00043563	0.28034	0.00014249	508.28549192942575	12.846	0.14462	12.846	12.754	12.899	0					5	3	2	0	0	0	0.42902	1	3002	3002		39.253	2.2244	1	242800	+		31562	12363	21831	21904	31959	31959					0.050344929062816846
QQSSAKENE	9	Unmodified	_QQSSAKENE_					0	0	0			REV__ZNF311|p.T306Ifs*11|1|0.04|ENSG00000197935|chr6:28996085-28996086|-/GAGA|frameshift_variant	REV__ZNF311|p.T306Ifs*11|1|0.04|ENSG00000197935|chr6:28996085-28996086|-/GAGA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7344665527344	2	510.73326	1019.45197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.73	1	30.73	30.23	31.23	0								0	0	0	0.31785	1	11518	11518		31.634	3.38	1		+		31563	17368	21832	21905	31960	31960					-0.05698093080798117
QQSYSSQK	8	Unmodified	_QQSYSSQK_					0	0	0			REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2281799316406	2	478.227613	954.440674	-0.43679	-0.00020888	1.8323	0.00087626	1.3955	0.00066737	478.2285685472671	20.702	0.51586	20.702	20.546	21.062	0					21	10	4	0	0	0	0.53424	1	6736	6736		56.721	0	1	1137600	+		31564	17807	21833	21906	31961	31961					-0.038368703842706964
QQTAAKTK	8	Unmodified	_QQTAAKTK_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.2508544921875	2	438.250892	874.48723	-0.39295	-0.00017221	0.26484	0.00011607	-0.12811	-5.6145E-05	438.250990082679	12.076	0.13186	12.076	11.994	12.126	0					7	3	3	0	0	0	0.2678	1	2638	2638		93.195	5.4412	1	433390			31565	11701	21834	21907	31962	31962					0.04496614237666563
QQTAAKTK	8	Unmodified	_QQTAAKTK_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2508850097656	2	438.250892	874.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.018	1	12.018	11.518	12.518	0								0	0	0	1.7419	1	2458	2458		32.812	0	1				31566	11701	21834	21907	31963	31963					0.04496614237666563
QQTDCEKK	8	Unmodified	_QQTDCEKK_					0	0	0		ZNF652|p.N298Kfs*8|1|0.27|ENSG00000198740|chr17:49316832-49316833|-/T|frameshift_variant	ZNF652|p.N298Kfs*8|1|0.27|ENSG00000198740|chr17:49316832-49316833|-/T|frameshift_variant	ZNF652|p.N298Kfs*8|1|0.27|ENSG00000198740|chr17:49316832-49316833|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2251892089844	2	490.229299	978.444045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.609	1	13.609	13.109	14.109	0								0	0	0	1.7419	1	3351	3351		39.253	0	1				31567	23168	21835	21908	31964	31964					-0.04603943601921401
QQTQNRMKL	9	Unmodified	_QQTQNRMKL_					0	0	0		nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENSG00000187672|ENST00000288221|ERC2	nc|ENSG00000082805|Q8IUD2-5|ERC1;ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.8046875	2	573.806039	1145.59753	0.067394	3.8671E-05	-2.3912	-0.0013721	-2.3238	-0.0013334	573.8046283528914	13.93	0.1523	13.93	13.804	13.956	0					11	6	3	0	0	0	0.61124	1	2906	2906		1.0954	0	1	186030			31568	7208;1684	21836	21909	31965	31965					0.03055091234386964
QQTRFGKK	8	Unmodified	_QQTRFGKK_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1;MIER3|p.N345_H346del|1|0.29|ENSG00000155545|chr5:56923929-56923934|ATGGTT/-|inframe_deletion;MIER3|p.R343Dfs*15|4|0.22|ENSG00000155545|chr5:56923940-56923940|T/-|frameshift_variant;ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	nc|ENSG00000198160|Q8N108-19|MIER1;MIER3|p.R343Dfs*15|4|0.22|ENSG00000155545|chr5:56923940-56923940|T/-|frameshift_variant	nc|ENSG00000198160|Q8N108-19|MIER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.288818359375	2	496.785433	991.556313	2.8931	0.0014372	-1.7714	-0.00088003	1.1216	0.00055722	496.7831290046473	19.098	0.21471	19.098	19.014	19.229	0					13	4	4	0	0	0	0.59411	1	5867	5867		50.025	7.6284	1	1221100			31569	7535;5130	21837	21910	31966	31966					0.0601969825723927
QQVHAAKNVTF	11	Unmodified	_QQVHAAKNVTF_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.5555725097656	3	414.891166	1241.65167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.456	1	25.456	24.956	25.956	0								0	0	0	0.40356	1	9036	9036		36.318	5.9999	1		+		31570	17420	21838	21911	31967	31967					0.0405100665759619
QQVKGHYR	8	Unmodified	_QQVKGHYR_					0	0	0		CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant;ENSG00000125817|ENST00000379751|CENPB	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2743835449219	2	508.275232	1014.53591	-0.10621	-5.3982E-05	-1.2257	-0.00062299	-1.3319	-0.00067697	508.2743931658231	23.593	0.21627	23.593	23.484	23.7	0					9	4	3	0	0	0	0.64096	1	8035	8035		42.474	0.078325	1	394100			31571	471	21839	21912	31968	31968					0.02922527597422686
QQVLQLSL	8	Unmodified	_QQVLQLSL_					0	0	0		ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7777404785156	2	464.776742	927.538931	0.083416	3.877E-05	0.34824	0.00016185	0.43165	0.00020062	464.7771726612301	34.405	0.17763	34.405	34.344	34.521	0					13	8	2	0	0	0	0.67394	1	11242	11242		37.159	1.5408	1	85944			31572	1563	21840	21913	31969	31969					0.07226357931563143
QQVPFRVPP	9	Unmodified	_QQVPFRVPP_					0	0	0		ENST00000474135.1_1_7:150747249-150747845:+|nuORF	ENST00000474135.1_1_7:150747249-150747845:+|nuORF	ENST00000474135.1_1_7:150747249-150747845:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.3046875	2	534.303458	1066.59236	-0.53872	-0.00028784	2.0571	0.0010991	1.5184	0.00081128	534.3046542607888	33.543	0.21663	33.543	33.461	33.678	0					17	8	3	0	0	0	0.50461	1	11245	11245		31.955	1.4512	1	336240			31573	9891	21841	21914	31970	31970					0.061731554340894945
QQVQASPSPQ	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))QQVQASPSPQ_					1	0	0			REV__nc|ENSG00000109339|P53779-2|MAPK10	REV__nc|ENSG00000109339|P53779-2|MAPK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.1854248046875	3	371.184127	1110.53055	0.94652	0.00035133	2.2037	0.00081797	3.1502	0.0011693	371.1850658094876	12.307	0.088305	12.307	12.265	12.354	0					6	2	3	0	0	0	0.45669	1	2746	2746		50.034	7.1692	1	306360	+		31574	20970	21842	21915	31971	31971					-0.020292407757096953
QQVTKTKTL	9	Unmodified	_QQVTKTKTL_					0	0	0			REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.814697265625	2	523.813856	1045.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.024	1	13.024	12.524	13.524	0								0	0	0	0.18645	1	2526	2526		52.937	10.072	1		+		31575	14722	21843	21916	31972	31972					0.09217701023112568
QQVTRSVN	8	Unmodified	_QQVTRSVN_					0	0	0		CKAP5|p.I1665T|1|0.24|ENSG00000175216|chr11:46753373-46753373|A/G|missense_variant	CKAP5|p.I1665T|1|0.24|ENSG00000175216|chr11:46753373-46753373|A/G|missense_variant	CKAP5|p.I1665T|1|0.24|ENSG00000175216|chr11:46753373-46753373|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.25469970703125	2	466.251423	930.488293	2.6315	0.0012269	3.9279	0.0018314	6.5594	0.0030583	466.2533203410747	14.231	0.2195	14.231	14.171	14.391	0					9	4	3	0	0	0	0.37144	1	3506	3506		74.255	8.7897	1	418100			31576	547	21844	21917	31973	31973					0.02026828606574327
QQWQATIKL	9	Unmodified	_QQWQATIKL_					0	0	0			REV__ENST00000520864.5_1_5:170395310-170632776:+|nuORF	REV__ENST00000520864.5_1_5:170395310-170632776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.31396484375	2	558.314023	1114.61349	1.802	0.0010061	-1.2093	-0.00067518	0.5927	0.00033091	558.313243403339	31.045	0.18507	31.045	30.955	31.14	0					8	4	2	0	0	0	0.36892	1	11275	11275		44.377	2.9506	1	155520	+		31577	19952	21845	21918	31974	31974					0.06077120742929765
QRAAEHLQR	9	Unmodified	_QRAAEHLQR_					0	0	0			REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.8034057617188	2	554.802146	1107.58974	1.8212	0.0010104	0.19283	0.00010698	2.014	0.0011174	554.8023668160808	34.188	0.6967	34.188	34.037	34.734	0					56	14	6	0	0	0	0.071197	1	13064	13064		87.754	2.5935	1	45089000	+		31578	16145	21846	21919	31975	31975					0.04024700029117412
QRAMDVPI	8	Unmodified	_QRAMDVPI_					0	0	0			REV__TBC1D10B|p.V327M|1|0.17|ENSG00000169221|chr16:30365572-30365572|C/T|missense_variant	REV__TBC1D10B|p.V327M|1|0.17|ENSG00000169221|chr16:30365572-30365572|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2480773925781	2	465.247295	928.480036	-0.68301	-0.00031777	1.7354	0.00080737	1.0523	0.0004896	465.2480680526385	29.533	0.29992	29.533	29.434	29.734	0					11	7	2	0	0	0	0.72381	1	10562	10562		30.504	2.2494	1	479170	+		31579	21624	21847	21920	31976	31976					0.012935583655803384
QRCECQRE	8	Unmodified	_QRCECQRE_					0	0	0		RIBC1|p.R233C|1|0.41|ENSG00000158423|chrX:53430429-53430429|C/T|missense_variant	RIBC1|p.R233C|1|0.41|ENSG00000158423|chrX:53430429-53430429|C/T|missense_variant	RIBC1|p.R233C|1|0.41|ENSG00000158423|chrX:53430429-53430429|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2247314453125	2	526.224025	1050.4335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.243	1	16.243	15.743	16.743	0								0	0	0	1.7419	1	3810	3810		14.865	1.0895	1				31580	22345	21848	21921	31977	31977					-0.08970249527988017
QRCELLQRA	9	Unmodified	_QRCELLQRA_					0	0	0		ENST00000592486.1_1_19:1475033-1475351:-|nuORF;ENSG00000119559|ENST00000585675|C19orf25	ENST00000592486.1_1_19:1475033-1475351:-|nuORF	ENST00000592486.1_1_19:1475033-1475351:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.8012084960938	2	558.800757	1115.58696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.691	1	14.691	14.191	15.191	0								0	0	0	0.21054	1	3226	3226		49.442	1.7842	1				31581	3123	21849	21922	31978	31978					0.033791085799748544
QRCHKPKK	8	Unmodified	_QRCHKPKK_					0	0	0		nc|ENSG00000145536|Q8TE57-2|ADAMTS16;ENSG00000145536|ENST00000274181|ADAMTS16	nc|ENSG00000145536|Q8TE57-2|ADAMTS16	nc|ENSG00000145536|Q8TE57-2|ADAMTS16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7947387695312	2	512.795278	1023.576	0.0093813	4.8107E-06	-0.82709	-0.00042413	-0.81771	-0.00041932	512.7946961292522	25.385	0.34918	25.385	25.275	25.624	0					16	8	3	0	0	0	0.64096	1	8689	8689		42.474	6.8562	1	256570			31582	4675	21850	21923	31979	31979					0.06515750996334191
QRCKKLKR	8	Unmodified	_QRCKKLKR_					0	0	0		ENST00000233813.4_1_2:217541158-217541338:-|nuORF	ENST00000233813.4_1_2:217541158-217541338:-|nuORF	ENST00000233813.4_1_2:217541158-217541338:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3302612304688	2	530.332027	1058.6495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.117	1	17.117	16.617	17.617	0								0	0	0	1.7419	1	4227	4227		25.45	2.4077	1				31583	8207	21851	21924	31980	31980					0.12252299438819136
QRCQRRLL	8	Unmodified	_QRCQRRLL_					0	0	0			REV__ENST00000489223.2_1_1:151288133-151299818:-|nuORF	REV__ENST00000489223.2_1_1:151288133-151299818:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8104248046875	2	536.811459	1071.60837	-1.4049	-0.00075418	-0.93131	-0.00049994	-2.3362	-0.0012541	536.8116572626773	15.098	0.097046	15.098	15.033	15.13	0					6	4	2	0	0	0	0.68432	1	3326	3326		25.45	0	1	38322	+		31584	18617	21852	21925	31981	31981					0.07542538399343357
QRDKIVKSG	9	Unmodified	_QRDKIVKSG_					0	0	0			REV__tr|U7ST22|U7ST22_FUSNURibonucleaseJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnjPE=3SV=1	REV__tr|U7ST22|U7ST22_FUSNURibonucleaseJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnjPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8045654296875	2	515.803823	1029.59309	3.2585	0.0016807	-1.8354	-0.00094669	1.4231	0.00073404	515.8027240505221	11.662	0.084678	11.662	11.601	11.686	0					5	3	2	0	0	0	0.55379	1	2315	2315		26.693	0	1	69487	+		31585	21891	21853	21926	31982	31982					0.07947950083121214
QRDPLHKR	8	Unmodified	_QRDPLHKR_					0	0	0			REV__ENSG00000068394|ENST00000156109|GPKOW	REV__ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.29736328125	2	525.301781	1048.58901	1.9056	0.001001	-0.92935	-0.00048819	0.97627	0.00051284	525.3013883601013	12.541	0.57708	12.541	12.44	13.017	0					31	17	4	0	0	0	0.67394	1	2838	2838		12.959	0	1	2244500	+		31586	13147	21854	21927	31983	31983					0.06665905380077675
QRDRHVPLL	9	Unmodified	_QRDRHVPLL_					0	0	0			REV__ENST00000536349.5_1_9:139999728-140000091:+|nuORF	REV__ENST00000536349.5_1_9:139999728-140000091:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.3305053710938	2	567.330539	1132.64652	0.62088	0.00035224	-0.51969	-0.00029484	0.10119	5.7406E-05	567.3301234315409	51.998	1.196	51.998	51.652	52.848	0					160	74	3	0	0	0	0.59802	1	16910	16910		21.96	1.013	1	264620	+		31587	20105	21855	21928	31984	31984					0.0855074758567298
QREIRWTGEEY	11	Unmodified	_QREIRWTGEEY_					0	0	0			REV__ENSG00000188730|ENST00000340652|VWC2	REV__ENSG00000188730|ENST00000340652|VWC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	733.8557739257812	2	733.854772	1465.69499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.67	1	23.67	23.17	24.17	0								0	0	0	0.45674	1	6882	6882		21.686	2.5822	1		+		31588	17186	21856	21929	31985	31985					-0.019228483557526488
QRELGFVRK	9	Unmodified	_QRELGFVRK_					0	0	0			REV__NCKAP5L|p.D92G|1|0.57|ENSG00000167566|chr12:49801924-49801924|T/C|missense_variant	REV__NCKAP5L|p.D92G|1|0.57|ENSG00000167566|chr12:49801924-49801924|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.3359375	2	566.832914	1131.65128	1.1889	0.00067393	2.9777	0.0016879	4.1667	0.0023618	567.3358387326143	17.996	0.091856	17.996	17.945	18.037	0					4	2	2	0	0	0	0.60058	1	4414	4414		14.865	0	1	63801	+		31589	21277	21857	21930	31986	31986					0.0907163172842047
QRELQAAY	8	Unmodified	_QRELQAAY_					0	0	0			REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7535095214844	2	489.753798	977.493044	-0.52851	-0.00025884	0.42112	0.00020624	-0.10739	-5.2597E-05	489.75396907069927	29.36	0.25781	29.36	29.258	29.515	0					9	5	3	0	0	0	0.5535	1	10737	10737		54.776	5.2403	1	239230	+		31590	14643	21858	21931	31987	31987					0.0033971274931445805
QREPDGTKNE	10	Unmodified	_QREPDGTKNE_					0	0	0		nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.2769775390625	2	587.278366	1172.54218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.673	1	34.673	34.173	35.173	0								0	0	0	0.4044	1	11704	11704		29.17	2.374	1				31591	7133	21859	21932	31988	31988					-0.03719043752403195
QRESQCLNDE	10	Unmodified	_QRESQCLNDE_					0	0	0			REV__ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	REV__ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.2642211914062	2	611.261859	1220.50916	2.9516	0.0018042	1.2548	0.00076703	4.2065	0.0025713	611.262411694048	38.816	0.48999	38.816	38.712	39.202	0					24	10	4	0	0	0	0.2538	1	15281	15281		72.879	6.45	1	739390	+		31592	17204	21860	21933	31989	31989					-0.09226993866718658
QRFGRGCE	8	Unmodified	_QRFGRGCE_					0	0	0			REV__ENST00000340911.8_1_9:97062029-97063649:+|nuORF	REV__ENST00000340911.8_1_9:97062029-97063649:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7246398925781	2	476.724518	951.434483	-0.36123	-0.00017221	0.82789	0.00039468	0.46666	0.00022247	476.72487595835486	12.178	0.13538	12.178	12.107	12.242	0					9	4	3	0	0	0	0.70055	1	2513	2513		33.516	1.5607	1	772980	+		31593	16630	21861	21934	31990	31990					-0.04317667096790956
QRFRDLAL	8	Unmodified	_QRFRDLAL_					0	0	0			REV__SCN11A|p.R841Q|1|0.28|ENSG00000168356|chr3:38894846-38894846|C/T|missense_variant	REV__SCN11A|p.R841Q|1|0.28|ENSG00000168356|chr3:38894846-38894846|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.1977844238281	3	340.197931	1017.57196	0.52863	0.00017984	-0.68732	-0.00023383	-0.1587	-5.3988E-05	340.19771039225503	24.585	0.5161	24.585	24.23	24.746	0					28	10	4	0	0	0	0.72381	1	8566	8566		25.574	0	1	2258000	+		31594	21492	21862	21935	31991	31991					0.06387984774266897
QRGERIPK	8	Unmodified	_QRGERIPK_					0	0	0		ENSG00000174738|ENST00000312521|NR1D2;ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENSG00000174738|ENST00000312521|NR1D2	ENSG00000174738|ENST00000312521|NR1D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.52960205078125	3	328.52968	982.567212	0.52789	0.00017343	-0.78476	-0.00025782	-0.25687	-8.439E-05	328.5294766389081	19.301	0.37	19.301	19.071	19.441	0					20	8	4	0	0	0	0.78142	1	5792	5792		32.812	11.127	1	631510			31595	6509	21863	21936	31992	31992					0.07523100631510715
QRGHRIQL	8	Unmodified	_QRGHRIQL_					0	0	0			REV__ENST00000381154.5_1_X:2838703-2839996:-|nuORF	REV__ENST00000381154.5_1_X:2838703-2839996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.533425	1006.57845	0.24112	8.1145E-05	1.9963	0.00067181	2.2374	0.00075295	336.53439956648424	18.565	1.7487	18.565	18.465	20.214	0					145	54	5	0	0	0	0.64096	1	4933	4933		35.618	0	1	248330000	+		31596	18780	21864	21937	31993	31993					0.0754192272564751
QRGMKTWT	8	Unmodified	_QRGMKTWT_					0	0	0			REV__ENST00000568012.5_1_16:30505673-30506106:+|nuORF	REV__ENST00000568012.5_1_16:30505673-30506106:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.25634765625	2	504.258194	1006.50183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.622	1	33.622	33.122	34.122	0								0	0	0	1.7419	1	11297	11297		35.618	5.1146	1		+		31597	20355	21865	21938	31994	31994					-0.0011563688585738419
QRGQLLRH	8	Unmodified	_QRGQLLRH_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343017578125	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.798	1	29.798	29.298	30.298	0								0	0	0	1.7419	1	9733	9733		21.96	9.1482	1				31598	7451	21866	21939	31995	31995					0.07541922725658878
QRGQLLRH	8	Unmodified	_QRGQLLRH_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.863	1	37.863	37.363	38.363	0								0	0	0	1.7419	1	14832	14832		10.866	0	1				31599	7451	21866	21939	31996	31996					0.07541922725658878
QRHDRRRLLSH	11	Unmodified	_QRHDRRRLLSH_					0	0	0			REV__ENST00000308278.12_1_17:635940-641136:+|nuORF	REV__ENST00000308278.12_1_17:635940-641136:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	737.4174194335938	2	737.416531	1472.81851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.113	1	42.113	41.613	42.613	0								0	0	0	0.45674	1	16541	16541		20.837	0.84038	1		+		31600	18253	21867	21940	31997	31997					0.1010129232588497
QRHLECLEQ	9	Unmodified	_QRHLECLEQ_					0	0	0			REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF	REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.2823486328125	2	578.282397	1154.55024	-0.42537	-0.00024598	0.28588	0.00016532	-0.13949	-8.0663E-05	578.2825189643968	21.849	0.26287	21.849	21.742	22.005	0					11	5	3	0	0	0	0.30841	1	7296	7296		49.536	3.5638	1	1749700	+		31601	19292	21868	21941	31998	31998					-0.020851880366080877
QRHPPQKK	8	Unmodified	_QRHPPQKK_					0	0	0			REV__ENST00000532108.1_1_11:4623360-4626734:-|nuORF	REV__ENST00000532108.1_1_11:4623360-4626734:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7988586425781	2	509.798875	1017.5832	-1.8294	-0.00093263	0.80856	0.0004122	-1.0208	-0.00052043	509.7993267681517	12.48	0.15737	12.48	12.426	12.583	0					24	9	4	0	0	0	0.28158	1	2412	2412		88.643	88.643	1	995460	+		31602	16185	21869	21942	31999	31999					0.07510806868413056
QRHQYWVV	8	Unmodified	_QRHQYWVV_					0	0	0			REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.293212890625	2	558.290882	1114.56721	1.2917	0.00072114	2.8866	0.0016116	4.1783	0.0023327	558.292206103273	30.745	0.15499	30.745	30.697	30.852	0					14	6	3	0	0	0	0.79882	1	9828	9828		19.36	0.25645	1	146940	+		31603	13411	21870	21943	32000	32000					0.014511006314933184
QRHRQALAV	9	Unmodified	_QRHRQALAV_					0	0	0			REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.2132873535156	3	360.212463	1077.61556	3.1022	0.0011175	-0.75515	-0.00027201	2.3471	0.00084544	360.2121397030818	18.446	0.26737	18.446	18.288	18.555	0					11	5	3	0	0	0	0.55379	1	5536	5536		26.693	4.1133	1	2088400	+		31604	21241	21871	21944	32001	32001					0.0798559427141754
QRIALVFPK	9	Unmodified	_QRIALVFPK_					0	0	0			REV__LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|3|1|sense	REV__LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|3|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.5610046386719	3	357.89396	1070.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.836	1	17.836	17.336	18.336	0								0	0	0	0.14033	1	4550	4550		62.107	14.148	1		+		31605	20853	21872	21945	32002	32002					0.12754605364875715
QRIVQVVK	8	Unmodified	_QRIVQVVK_					0	0	0			REV__ENSG00000143314|ENST00000361531|MRPL24	REV__ENSG00000143314|ENST00000361531|MRPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.3135681152344	2	485.313826	968.613099	-0.56825	-0.00027578	-0.60662	-0.0002944	-1.1749	-0.00057018	485.31359878265965	14.919	0.21827	14.919	14.811	15.029	0					6	4	2	0	0	0	0.27512	1	3835	3835		68.485	0	1	171830	+		31606	15180	21873	21946	32003	32003					0.12753745813756723
QRKTLPGN	8	Unmodified	_QRKTLPGN_					0	0	0		ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2641296386719	2	457.264333	912.514114	0.39562	0.0001809	-0.74	-0.00033838	-0.34439	-0.00015748	457.26377448537	54.432	0.2202	54.432	54.345	54.565	0					22	13	3	0	0	0	0.78142	1	15962	15962		23.042	1.0826	1	90969			31607	9181	21874	21947	32004	32004					0.05435722848869773
QRKVKWPE	8	Unmodified	_QRKVKWPE_					0	0	0			REV__ZNF736|p.F167Lfs*31|1|0.22|ENSG00000234444|chr7:64348360-64348360|T/-|frameshift_variant	REV__ZNF736|p.F167Lfs*31|1|0.22|ENSG00000234444|chr7:64348360-64348360|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.8097534179688	2	535.808908	1069.60326	0.11258	6.0322E-05	0.92444	0.00049533	1.037	0.00055565	535.8094511272259	14.998	0.11223	14.998	14.939	15.051	0					11	5	3	0	0	0	0.65276	1	3336	3336		40.573	40.573	1	187600	+		31608	17657	21875	21948	32005	32005					0.07124557808378995
QRKVLTLEK	9	Unmodified	_QRKVLTLEK_					0	0	0		ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.85107421875	2	557.850773	1113.68699	0.11916	6.6473E-05	0.23552	0.00013139	0.35468	0.00019786	557.8510771026408	20.548	0.099079	20.548	20.498	20.597	0					5	3	2	0	0	0	0.40759	1	5756	5756		41.427	2.1738	1	45468			31609	5426	21876	21949	32006	32006					0.13469669185428756
QRLATLYKS	9	Unmodified	_QRLATLYKS_					0	0	0		ENSG00000108384|ENST00000337432|RAD51C	ENSG00000108384|ENST00000337432|RAD51C	ENSG00000108384|ENST00000337432|RAD51C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.3118286132812	2	540.314023	1078.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.69	1	10.69	10.19	11.19	0								0	0	0	0.30504	1	2077	2077		34.173	2.6427	1				31610	2526	21877	21950	32007	32007					0.0773312074295518
QRLCVGVPFV	10	Unmodified	_QRLCVGVPFV_					0	0	0			REV__ENST00000262585.6_3_8:142204541-142204589:+|nuORF	REV__ENST00000262585.6_3_8:142204541-142204589:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.20941162109375	3	373.211071	1116.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.303	1	24.303	23.803	24.803	0								0	0	0	0.4201	1	7420	7420		22.58	2.5829	1		+		31611	18033	21878	21951	32008	32008					0.057743687335005234
QRLGPSWKR	9	Unmodified	_QRLGPSWKR_					0	0	0			REV__ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant	REV__ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.3272094726562	2	564.325257	1126.63596	3.4705	0.0019585	-0.62839	-0.00035462	2.8421	0.0016039	564.3250116658446	17.507	0.85353	17.507	17.353	18.206	0					40	17	3	0	0	0	0.085655	1	5074	5074		66.429	9.9955	1	4537400	+		31612	22306	21879	21952	32009	32009					0.07770764931228769
QRLIFELA	8	Unmodified	_QRLIFELA_					0	0	0		ENST00000409449.5_1_2:201750469-201754005:-|nuORF	ENST00000409449.5_1_2:201750469-201754005:-|nuORF	ENST00000409449.5_1_2:201750469-201754005:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2936096191406	2	495.292559	988.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.207	1	22.207	21.707	22.707	0								0	0	0	1.7419	1	7481	7481		38.806	3.6054	1				31613	9299	21880	21953	32010	32010					0.0758235068550448
QRLNKTAGLNI	11	Unmodified	_QRLNKTAGLNI_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	614.3626098632812	2	614.362036	1226.70952	2.9984	0.0018421	-2.2273	-0.0013684	0.77112	0.00047375	614.3606183310458	20.819	0.16585	20.819	20.709	20.875	0					6	3	2	0	0	0	0.38061	1	6691	6691		29.17	0	1	1282500	+		31614	13326	21881	21954	32011	32011					0.10523268583051504
QRLPDAPPL	9	Unmodified	_QRLPDAPPL_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7875061035156	2	503.787641	1005.56073	-0.41718	-0.00021017	-0.11957	-6.0237E-05	-0.53675	-0.00027041	503.78741473080424	31.429	0.21833	31.429	31.319	31.537	0					10	4	3	0	0	0	0.47038	1	11738	11738		35.618	0	1	187240	+		31615	16953	21882	21955	32012	32012					0.058171626801254206
QRLPGRAALE	10	Unmodified	_QRLPGRAALE_					0	0	0			REV__nc|ENSG00000155463|Q15070-2|OXA1L	REV__nc|ENSG00000155463|Q15070-2|OXA1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.8216552734375	2	555.822547	1109.63054	-0.45456	-0.00025266	-2.4677	-0.0013716	-2.9223	-0.0016243	555.8215056065616	21.45	0.17068	21.45	21.375	21.546	0					11	5	3	0	0	0	0.50287	1	6151	6151		40.778	7.9657	1	307580	+		31616	15595	21883	21956	32013	32013					0.08011041348777326
QRLQYIKQ	8	Unmodified	_QRLQYIKQ_					0	0	0		SAMHD1|p.R145Q|1|0.24|ENSG00000101347|chr20:36935104-36935104|C/T|missense_variant	SAMHD1|p.R145Q|1|0.24|ENSG00000101347|chr20:36935104-36935104|C/T|missense_variant	SAMHD1|p.R145Q|1|0.24|ENSG00000101347|chr20:36935104-36935104|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.81591796875	2	538.81419	1075.61383	1.0084	0.00054333	0.98083	0.00052848	1.9892	0.0010718	538.8145619075241	14.075	0.15238	14.075	13.986	14.139	0					13	6	3	0	0	0	0.49216	1	2914	2914		50.025	9.4519	1	140640			31617	22373	21884	21957	32014	32014					0.07904540462777732
QRLRGHLPL	9	Unmodified	_QRLRGHLPL_					0	0	0		ENST00000278559.7_1_11:76796081-76823747:+|nuORF;ENST00000456580.6_1_11:76796081-76823747:+|nuORF	ENST00000278559.7_1_11:76796081-76823747:+|nuORF	ENST00000278559.7_1_11:76796081-76823747:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3348388671875	2	545.335624	1088.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.236	1	12.236	11.736	12.736	0								0	0	0	0.39312	1	2534	2534		12.959	0	1				31618	8401	21885	21958	32015	32015					0.11591355310883955
QRLRGRYT	8	Unmodified	_QRLRGRYT_					0	0	0		ENST00000426431.2_1_12:53809661-53809787:+|nuORF	ENST00000426431.2_1_12:53809661-53809787:+|nuORF	ENST00000426431.2_1_12:53809661-53809787:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.302490234375	2	525.301781	1048.58901	1.6355	0.00085915	-0.018579	-9.7596E-06	1.617	0.00084939	525.3015818793563	12.274	0.055202	12.274	12.228	12.283	0					6	3	2	0	0	0	0.7976	1	2368	2368		7.1934	1.2722	1	41673			31619	9446	21886	21959	32016	32016					0.06665905380077675
QRLTSKLEGHA	11	Unmodified	_QRLTSKLEGHA_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	620.3441162109375	2	620.343843	1238.67313	0.093848	5.8218E-05	0.073654	4.5691E-05	0.1675	0.00010391	620.3439204688259	17.655	0.20739	17.655	17.568	17.776	0					9	5	3	0	0	0	0.3865	1	5009	5009		52.937	1.4089	1	571750	+		31620	14334	21887	21960	32017	32017					0.06334391686345953
QRLVVPATQ	9	Unmodified	_QRLVVPATQ_					0	0	0		PCBP1|p.L100Q|7|0.33|ENSG00000169564|chr2:70088042-70088042|T/A|missense_variant	PCBP1|p.L100Q|7|0.33|ENSG00000169564|chr2:70088042-70088042|T/A|missense_variant	PCBP1|p.L100Q|7|0.33|ENSG00000169564|chr2:70088042-70088042|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.3012390136719	2	506.300916	1010.58728	3.7502	0.0018987	-3.2596	-0.0016504	0.49055	0.00024837	506.2991067193419	14.709	0.090802	14.709	14.649	14.74	0					5	3	2	0	0	0	0.41958	1	3242	3242		40.778	1.972	1	101170			31621	11901	21888	21961	32018	32018					0.08240851571463281
QRLYLVKG	8	Unmodified	_QRLYLVKG_					0	0	0			REV__CAPN12|p.E213K|1|0.54|ENSG00000182472|chr19:38740143-38740143|C/T|missense_variant	REV__CAPN12|p.E213K|1|0.54|ENSG00000182472|chr19:38740143-38740143|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.80047607421875	2	488.800552	975.58655	-0.077048	-3.7661E-05	-0.58557	-0.00028623	-0.66262	-0.00032389	488.800287980322	26.837	0.21707	26.837	26.727	26.944	0					9	4	3	0	0	0	0.49887	1	9642	9642		60.294	2.064	1	364980	+		31622	12327	21889	21962	32019	32019					0.09778056922425549
QRMCLLLD	8	Unmodified	_QRMCLLLD_					0	0	0			REV__ENST00000369833.5_1_1:110202357-110202663:+|nuORF	REV__ENST00000369833.5_1_1:110202357-110202663:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.776611328125	2	496.256805	990.499057	-2.3608	-0.0011716	-1.1304	-0.00056095	-3.4912	-0.0017325	496.25617706525844	23.108	0.31686	23.108	22.98	23.297	0					16	7	4	0	0	0	0.68432	1	6969	6969		18.324	0	1	236380	+		31623	18626	21890	21963	32020	32020					0.003427716649980539
QRMCWVLTY	9	Unmodified	_QRMCWVLTY_					0	0	0			REV__UROD|p.P32L|1|0.41|ENSG00000126088|chr1:45012981-45012981|C/T|missense_variant	REV__UROD|p.P32L|1|0.41|ENSG00000126088|chr1:45012981-45012981|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.291015625	2	600.288637	1198.56272	2.1031	0.0012625	0.48062	0.00028851	2.5837	0.001551	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.45358	1	16436	16436		37.159	1.9584	1	67330000	+		31624	22265	21891	21964	32021	32021					-0.028618678979228207
QRMGLKKQE	9	Unmodified	_QRMGLKKQE_					0	0	0		ENST00000495715.1_1_10:3111490-3111553:+|nuORF	ENST00000495715.1_1_10:3111490-3111553:+|nuORF	ENST00000495715.1_1_10:3111490-3111553:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.3118896484375	2	559.310958	1116.60736	1.2865	0.00071955	-0.18252	-0.00010209	1.104	0.00061746	559.3108314333012	22.021	1.2787	22.021	21.942	23.221	0					90	39	3	0	0	0	0.16806	1	6150	6150		68.787	68.787	1	1945700			31625	10110	21892	21965	32022	32022					0.05372279239782074
QRMRQSSQK	9	Unmodified	_QRMRQSSQK_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.8032836914062	2	574.801288	1147.58802	3.33	0.0019141	-0.16927	-9.7295E-05	3.1608	0.0018168	574.8011322234456	39.726	0.75042	39.726	39.592	40.342	0					59	17	6	0	0	0	0.062676	1	15706	15706		90.777	10.322	1	10359000	+		31626	14065	21893	21966	32023	32023					0.02013322948869245
QRMVASVPFVK	11	Unmodified	_QRMVASVPFVK_					0	0	0		nc|ENSG00000204764|Q9H2T7-2|RANBP17;RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;ENST00000522380.2_1_5:170346486-170397534:+|nuORF	nc|ENSG00000204764|Q9H2T7-2|RANBP17	nc|ENSG00000204764|Q9H2T7-2|RANBP17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	631.3565673828125	2	631.357908	1260.70126	1.1535	0.00072825	1.779	0.0011232	2.9325	0.0018515	631.3589279224451	20.79	1.294	20.79	19.554	20.848	0					49	28	2	0	0	0	0.41029	1	6523	6523		41.427	0	1	613660			31627	7723	21894	21967	32024	32024					0.081339983420321
QRNCLTVLG	9	Unmodified	_QRNCLTVLG_					0	0	0		LRRC70|p.R167C|1|0.3|ENSG00000186105|chr5:62579937-62579937|C/T|missense_variant	LRRC70|p.R167C|1|0.3|ENSG00000186105|chr5:62579937-62579937|C/T|missense_variant	LRRC70|p.R167C|1|0.3|ENSG00000186105|chr5:62579937-62579937|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.27105712890625	2	502.271301	1002.52805	0.051032	2.5632E-05	-0.39933	-0.00020057	-0.3483	-0.00017494	502.27119614415074	24.72	0.16738	24.72	24.61	24.778	0					6	3	2	0	0	0	0.25716	1	8694	8694		54.776	3.4409	1	423510			31628	11330	21895	21968	32025	32025					0.026886322856285005
QRNESCGGTF	10	Unmodified	_QRNESCGGTF_					0	0	0		CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant;ENSG00000150938|ENST00000280527|CRIM1	CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.73779296875	2	549.73528	1097.45601	1.7215	0.00094635	0.98011	0.0005388	2.7016	0.0014851	549.7359668140684	47.7	0.65792	47.7	47.347	48.005	0					54	39	2	0	0	0	0.68774	1	18146	18146		23.523	0	1	75033			31629	694	21896	21969	32026	32026					-0.0888232685872481
QRNESEESK	9	Unmodified	_QRNESEESK_					0	0	0			REV__ENSG00000135951|ENST00000393483|TSGA10	REV__ENSG00000135951|ENST00000393483|TSGA10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.7569580078125	2	553.757266	1105.49998	0.61641	0.00034134	-1.4384	-0.00079655	-0.82203	-0.0004552	553.7566504555286	15.85	0.25717	15.85	15.763	16.021	0					8	6	2	0	0	0	0.33044	1	4189	4189		47.657	0	1	412240	+		31630	14834	21897	21970	32027	32027					-0.04855019160754637
QRPHHGDPQ	9	Unmodified	_QRPHHGDPQ_					0	0	0		TMEM108|p.P359Gfs*53|1|0.38|ENSG00000144868|chr3:133380781-133380782|-/GG|frameshift_variant;nc|ENSG00000144868|Q6UXF1-2|TMEM108;ENST00000511388.1_1_3:133098579-133114827:+|nuORF;ENSG00000144868|ENST00000321871|TMEM108	TMEM108|p.P359Gfs*53|1|0.38|ENSG00000144868|chr3:133380781-133380782|-/GG|frameshift_variant	TMEM108|p.P359Gfs*53|1|0.38|ENSG00000144868|chr3:133380781-133380782|-/GG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.257080078125	2	536.257571	1070.50059	0.19422	0.00010415	-1.7712	-0.00094982	-1.577	-0.00084566	536.2563430328479	19.207	0.41859	19.207	18.889	19.308	0					16	10	2	0	0	0	0.26904	1	5769	5769		53.351	0.41475	1	714250			31631	4648	21898	21971	32028	32028					-0.031841349303931565
QRPRGDGQ	8	Unmodified	_QRPRGDGQ_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.234375	2	457.233565	912.452576	2.4894	0.0011382	-0.55111	-0.00025199	1.9383	0.00088626	457.23326906473443	23.061	0.26158	23.061	22.956	23.218	0					12	5	3	0	0	0	0.61938	1	7775	7775		45.952	45.952	1	1666300			31632	6598	21899	21972	32029	32029					-0.007152088504199128
QRPRTAAL	8	Unmodified	_QRPRTAAL_					0	0	0			REV__ENST00000302754.5_1_19:12902350-12902593:+|nuORF	REV__ENST00000302754.5_1_19:12902350-12902593:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7718811035156	2	456.772326	911.530098	-0.78394	-0.00035808	0.361	0.00016489	-0.42294	-0.00019319	456.77237670450455	51.456	0.24724	51.456	51.356	51.604	0					23	15	2	0	0	0	0.79719	1	15359	15359		18.324	0	1	118280	+		31633	18216	21900	21973	32030	32030					0.07079429085752054
QRPSQELLW	9	Unmodified	_QRPSQELLW_					0	0	0		nc|ENSG00000289701|Q9H257-3|CARD9;nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9;ENST00000485975.1_1_9:139264964-139265319:-|nuORF	nc|ENSG00000289701|Q9H257-3|CARD9	nc|ENSG00000289701|Q9H257-3|CARD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.8112182617188	2	578.809105	1155.60366	3.2582	0.0018859	0.16986	9.8315E-05	3.4281	0.0019842	578.8092536015272	39.03	1.2775	39.03	38.856	40.134	0					57	28	4	0	0	0	0.39215	1	15395	15395		42.396	3.1433	1	366050			31634	7219	21901	21974	32031	32031					0.03207932737564079
QRPVRVKH	8	Unmodified	_QRPVRVKH_					0	0	0			REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.54638671875	3	340.545553	1018.61483	0.52804	0.00017982	2.1036	0.00071636	2.6316	0.00089618	340.54628932678804	27.739	0.21268	27.739	27.634	27.846	0					6	4	2	0	0	0	0.79882	1	10093	10093		15.642	0	1	264870	+		31635	13375	21902	21975	32032	32032					0.10626799622366434
QRQEIVAK	8	Unmodified	_QRQEIVAK_					0	0	0			REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2851257324219	2	486.285266	970.555979	-0.087262	-4.2434E-05	-0.18718	-9.102E-05	-0.27444	-0.00013345	486.2851115036059	16.972	0.16722	16.972	16.863	17.03	0					7	3	3	0	0	0	0.32597	1	4967	4967		79.713	2.9384	1	810840	+		31636	15297	21903	21976	32033	32033					0.06952278537369239
QRQLGADD	8	Unmodified	_QRQLGADD_					0	0	0			REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7217102050781	2	451.719956	901.425358	3.8025	0.0017177	-0.52229	-0.00023593	3.2802	0.0014817	451.7201079141282	22.327	0.10765	22.327	22.269	22.376	0					6	3	2	0	0	0	0.60719	1	6554	6554		47.916	1.9636	1	34236	+		31637	15520	21904	21977	32034	32034					-0.029297371814664075
QRQSLFGAQ	9	Unmodified	_QRQSLFGAQ_					0	0	0		ENSG00000120068|ENST00000239144|HOXB8	ENSG00000120068|ENST00000239144|HOXB8	ENSG00000120068|ENST00000239144|HOXB8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7728881835938	2	517.772522	1033.53049	1.5654	0.00081053	-1.0967	-0.00056784	0.46872	0.00024269	517.7721007088431	16.392	0.16534	16.392	16.333	16.499	0					9	3	3	0	0	0	0.11898	1	4542	4542		75.043	16.261	1	717980			31638	3159	21905	21978	32035	32035					0.01506804014957197
QRRAAPLPPP	10	Unmodified	_QRRAAPLPPP_					0	0	0		ENST00000374810.7_1_20:33292105-33293196:+|nuORF	ENST00000374810.7_1_20:33292105-33293196:+|nuORF	ENST00000374810.7_1_20:33292105-33293196:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.830322265625	2	551.827632	1101.64071	1.4866	0.00082035	3.3873	0.0018692	4.8739	0.0026896	551.8295396582206	15.921	0.082515	15.921	15.879	15.962	0					7	4	2	0	0	0	0.69166	1	3540	3540		23.042	1.0826	1	52022			31639	9018	21906	21979	32036	32036					0.09395649073962886
QRRDFAVVK	9	Unmodified	_QRRDFAVVK_					0	0	0		nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;ENST00000421817.5_1_2:182412449-182414421:-|nuORF	nc|ENSG00000188452|Q49MI3-5|CERKL	nc|ENSG00000188452|Q49MI3-5|CERKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	559.8258056640625	2	559.825089	1117.63563	0.12386	6.9343E-05	1.499	0.00083915	1.6228	0.00090849	559.8259338748879	14.868	0.11722	14.868	14.794	14.911	0					7	4	2	0	0	0	0.61124	1	3294	3294		10.866	0	1	64911			31640	7252	21907	21980	32037	32037					0.08151345211376793
QRRPREQGPS	10	Unmodified	_QRRPREQGPS_					0	0	0			REV__ENSG00000035141|ENST00000430566|FAM136A	REV__ENSG00000035141|ENST00000430566|FAM136A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8233032226562	2	605.823609	1209.63267	0.42841	0.00025954	-0.76815	-0.00046536	-0.33974	-0.00020582	605.8229485017712	16.405	0.11634	16.405	16.347	16.463	0					4	2	2	0	0	0	0.64162	1	4697	4697		29.17	0.020503	1	135450	+		31641	12979	21908	21981	32038	32038					0.036234700865634295
QRRREFKDR	9	Unmodified	_QRRREFKDR_					0	0	0		NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant	NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	645.8569946289062	2	645.860526	1289.7065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.888	1	42.888	42.388	43.388	0								0	0	0	0.36266	1	14090	14090		21.96	3.6978	1				31642	7239	21909	21982	32039	32039					0.07323438248886305
QRRSRHGE	8	Unmodified	_QRRSRHGE_					0	0	0		ENST00000436636.6_1_3:171177820-171177916:-|nuORF	ENST00000436636.6_1_3:171177820-171177916:-|nuORF	ENST00000436636.6_1_3:171177820-171177916:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2703857421875	2	513.271013	1024.52747	0.012819	6.5796E-06	-1.6872	-0.00086598	-1.6744	-0.0008594	513.2702717417881	15.529	0.33833	15.529	15.358	15.697	0					19	8	3	0	0	0	0.5676	1	4035	4035		53.351	3.9099	1	7769900			31643	9535	21910	21983	32040	32040					0.016189736808200905
QRRSYRGIF	9	Unmodified	_QRRSYRGIF_					0	0	0			REV__nc|ENSG00000155275|Q8IYL2-2|TRMT44	REV__nc|ENSG00000155275|Q8IYL2-2|TRMT44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.8299560546875	2	591.828163	1181.64177	3.1783	0.001881	-0.59115	-0.00034986	2.5872	0.0015312	591.8277918056689	43.586	0.56911	43.586	43.463	44.032	0					50	18	4	0	0	0	0.4966	1	17408	17408		32.812	32.812	1	2900200	+		31644	21072	21911	21984	32041	32041					0.05821863442884023
QRRVLRNL	8	Unmodified	_QRRVLRNL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.22540283203125	3	352.224591	1053.65194	3.0397	0.0010707	-0.62275	-0.00021935	2.417	0.00085132	352.2243445814888	21.713	0.36947	21.713	21.454	21.823	0					19	7	4	0	0	0	0.76283	1	7121	7121		20.947	0	1	1106100			31645	6989	21912	21985	32042	32042					0.12726471168139142
QRSEEKLP	8	Unmodified	_QRSEEKLP_					0	0	0		KIAA0146-ANK1|4|fusion;KIAA0146-ANK1|1|fusion;KIAA0146-ANK1|2|fusion;KIAA0146-ANK1|3|fusion;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-10|ANK1;ANK1|p.S1653Y|1|0.25|ENSG00000029534|chr8:41672492-41672492|G/T|missense_variant	KIAA0146-ANK1|4|fusion	KIAA0146-ANK1|4|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7666320800781	2	493.766906	985.519259	0.76533	0.0003779	-0.78737	-0.00038878	-0.022041	-1.0883E-05	493.7662822439331	17.468	0.4458	17.468	17.185	17.63	0					21	11	4	0	0	0	0.49216	1	4926	4926		60.972	0	1	306680			31646	11250	21913	21986	32043	32043					0.025919819208070294
QRSFDGTYLLK	11	Unmodified	_QRSFDGTYLLK_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	664.3525390625	2	664.353877	1326.6932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.153	1	14.153	13.653	14.653	0								0	0	0	0.45674	1	2872	2872		7.3997	0	1		+		31647	14235	21914	21987	32044	32044					0.0429214262626374
QRSGTIGGDNP	11	Unmodified	_QRSGTIGGDNP_					0	0	0			REV__ZNF518B|p.N736S|1|0.24|ENSG00000178163|chr4:10444122-10444122|T/C|missense_variant	REV__ZNF518B|p.N736S|1|0.24|ENSG00000178163|chr4:10444122-10444122|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.27001953125	2	551.267801	1100.52105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.446	1	11.446	10.946	11.946	0								0	0	0	0.43542	1	2225	2225		29.17	0.020503	1		+		31648	22325	21915	21988	32045	32045					-0.02519009061234101
QRSKAGWQNS	10	Unmodified	_QRSKAGWQNS_					0	0	0		ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.2922973632812	2	581.291611	1160.56867	-0.14072	-8.18E-05	1.5933	0.0009262	1.4526	0.0008444	581.2920849465291	28.122	0.16786	28.122	28.014	28.182	0					9	6	2	0	0	0	0.68774	1	9039	9039		23.523	0	1	104240			31649	7811	21916	21989	32046	32046					-0.0051931007037637755
QRSNEDEEEEY	11	Unmodified	_QRSNEDEEEEY_					0	0	0			REV__ENST00000584861.5_1_17:73663452-73668036:+|nuORF	REV__ENST00000584861.5_1_17:73663452-73668036:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.52447509765625	3	476.523425	1426.54845	-0.62586	-0.00029824	3.2884	0.001567	2.6625	0.0012688	476.52496337125143	37.374	0.16516	37.374	37.268	37.434	0					5	3	2	0	0	0	0.78372	1	14620	14620		18.531	1.8137	1	123990	+		31650	15780	21917	21990	32047	32047					-0.14776615102141477
QRSVGLLKSI	10	Unmodified	_QRSVGLLKSI_					0	0	0			REV__tr|U7SUD8|U7SUD8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01390PE=4SV=1	REV__tr|U7SUD8|U7SUD8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01390PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.842529296875	2	550.842948	1099.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.75	1	19.75	19.25	20.25	0								0	0	0	0.4044	1	5169	5169		29.17	4.6509	1		+		31651	21972	21918	21991	32048	32048					0.12549382668385078
QRSVRVVQP	9	Unmodified	_QRSVRVVQP_					0	0	0		ENST00000591390.1_1_19:640215-640473:+|nuORF	ENST00000591390.1_1_19:640215-640473:+|nuORF	ENST00000591390.1_1_19:640215-640473:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.319091796875	2	534.817264	1067.61998	0.70872	0.00037904	0.26086	0.00013951	0.96958	0.00051855	534.8173419260092	14.214	0.27178	14.214	14.103	14.375	0					10	5	2	0	0	0	0.60749	1	3548	3548		20.947	0	1	187000			31652	10963	21919	21992	32049	32049					0.08887058694335792
QRTRKSLGR	9	Unmodified	_QRTRKSLGR_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.3352661132812	2	551.333613	1100.65267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.447	1	14.447	13.947	14.947	0								0	0	0	0.1633	1	3128	3128		56.721	10.264	1				31653	7501	21920	21993	32050	32050					0.1063726581719493
QRVEEYWKN	9	Unmodified	_QRVEEYWKN_					0	0	0			REV__nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	REV__nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	626.308349609375	2	626.309469	1250.60439	-0.70545	-0.00044183	-1.004	-0.00062884	-1.7095	-0.0010707	626.3088845571768	15.839	0.12919	15.839	15.786	15.915	0					12	5	3	0	0	0	0.1115	1	3692	3692		76.774	14.667	1	267490	+		31654	17357	21921	21994	32051	32051					-0.010892726133761244
QRVHIISLG	9	Unmodified	_QRVHIISLG_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225	REV__ENSG00000256294|ENST00000262894|ZNF225	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.80816650390625	2	511.808908	1021.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.126	1	17.126	16.626	17.626	0								0	0	0	0.35899	1	4025	4025		23.042	3.0457	1		+		31655	17760	21922	21995	32052	32052					0.09332557808386355
QRVIRMPEA	9	Unmodified	_QRVIRMPEA_					0	0	0			REV__PRR14|p.P279Qfs*2|2|0.35|ENSG00000156858|chr16:30654800-30654800|C/-|frameshift_variant	REV__PRR14|p.P279Qfs*2|2|0.35|ENSG00000156858|chr16:30654800-30654800|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3067016601562	2	550.305675	1098.5968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.136	1	11.136	10.636	11.636	0								0	0	0	0.37821	1	2213	2213		17.365	0	1		+		31656	15641	21923	21996	32053	32053					0.051442965853539135
QRVIVEREAK	10	Unmodified	_QRVIVEREAK_					0	0	0			REV__ENSG00000180777|ENST00000690538|ANKRD30B	REV__ENSG00000180777|ENST00000690538|ANKRD30B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	614.36181640625	2	614.362036	1226.70952	-2.01	-0.0012348	1.7786	0.0010927	-0.23135	-0.00014213	614.3630868779306	20.685	0.10906	20.685	20.629	20.738	0					4	2	2	0	0	0	0.73511	1	5877	5877		6.3127	0	1	145820	+		31657	16820	21924	21997	32054	32054					0.10523268583028766
QRVLDDTVKV	10	Unmodified	_QRVLDDTVKV_					0	0	0			REV__nc|ENSG00000143742|P49458-2|SRP9	REV__nc|ENSG00000143742|P49458-2|SRP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.834716796875	2	586.83532	1171.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.389	1	30.389	29.889	30.889	0								0	0	0	0.37129	1	10342	10342		39.253	4.1008	1		+		31658	21053	21925	21998	32055	32055					0.07712471080503747
QRVQAGTLTL	10	Unmodified	_QRVQAGTLTL_					0	0	0			REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant;REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8193359375	2	543.81693	1085.61931	3.6497	0.0019848	0.90187	0.00049045	4.5516	0.0024752	543.8174337997854	31.893	0.31643	31.893	31.786	32.102	0					11	6	2	0	0	0	0.41055	1	11982	11982		42.864	5.0528	1	1468400	+		31659	13295;21602	21926	21999	32056	32056					0.07992219254629163
QRVRERKK	8	Unmodified	_QRVRERKK_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3460693359375	2	550.343981	1098.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.403	1	13.403	12.903	13.903	0								0	0	0	1.7419	1	3043	3043		18.324	0	1		+		31660	14496	21927	22000	32057	32057					0.1280185619684744
QRVSTKGL	8	Unmodified	_QRVSTKGL_					0	0	0			REV__ENST00000470209.5_1_X:153173185-153178999:-|nuORF	REV__ENST00000470209.5_1_X:153173185-153178999:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.76666259765625	2	444.766709	887.518865	-0.29416	-0.00013083	0.19603	8.7188E-05	-0.098131	-4.3645E-05	444.76678946632626	16.501	0.2023	16.501	16.403	16.605	0					11	6	3	0	0	0	0.37378	1	3759	3759		73.975	0	1	584100	+		31661	13415	21928	22001	32058	32058					0.07060606991637997
QRWTRAPR	8	Unmodified	_QRWTRAPR_					0	0	0			REV__ENST00000578692.1_1_17:29124415-29151644:-|nuORF	REV__ENST00000578692.1_1_17:29124415-29151644:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.5376892089844	3	357.537058	1069.58934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.251	1	23.251	22.751	23.751	0								0	0	0	1.7419	1	7065	7065		15.642	0	1		+		31662	20438	21929	22002	32059	32059					0.057333250999136
QRWVVSFP	8	Unmodified	_QRWVVSFP_					0	0	0			REV__FAM57B|p.L146F|1|0.35|ENSG00000149926|chr16:30026617-30026617|G/A|missense_variant	REV__FAM57B|p.L146F|1|0.35|ENSG00000149926|chr16:30026617-30026617|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7773132324219	2	509.777077	1017.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.716	1	39.716	39.216	40.216	0								0	0	0	1.7419	1	15716	15716		38.806	1.7777	1		+		31663	20661	21930	22003	32060	32060					0.031531973712844774
QRYGMIRT	8	Unmodified	_QRYGMIRT_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.772216796875	2	512.771468	1023.52838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.423	1	15.423	14.923	15.923	0								0	0	0	1.7419	1	3979	3979		63.306	10.37	1				31664	6848	21931	22004	32061	32061					0.017560520054985318
QRYRGRKK	8	Unmodified	_QRYRGRKK_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.3329467773438	2	546.330873	1090.64719	3.7855	0.0020682	-0.052064	-2.8444E-05	3.7335	0.0020397	546.3308511673519	26.227	0.41845	26.227	26.117	26.536	0					19	8	4	0	0	0	0.51384	1	9249	9249		68.485	68.485	1	3379700	+		31665	21138	21932	22005	32062	32062					0.10549587025366236
QRYVQLKQ	8	Unmodified	_QRYVQLKQ_					0	0	0		ENST00000481947.1_1_16:105509-105883:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000481947.1_1_16:105509-105883:+|nuORF	ENST00000481947.1_1_16:105509-105883:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.8084106445312	2	531.806365	1061.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.041	1	19.041	18.541	19.541	0								0	0	0	1.7419	1	4850	4850		79.939	16.633	1				31666	5433	21933	22006	32063	32063					0.06984253945756791
QSAAEWHRL	9	Unmodified	_QSAAEWHRL_					0	0	0			REV__ENST00000547675.5_1_12:49496282-49498554:-|nuORF	REV__ENST00000547675.5_1_12:49496282-49498554:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.7791137695312	2	549.277972	1096.54139	1.5884	0.0008725	-2.2111	-0.0012145	-0.62269	-0.00034203	549.7782771945544	24.498	0.11709	24.498	24.435	24.552	0					5	3	2	0	0	0	0.54081	1	7243	7243		27.882	1.1893	1	66868	+		31667	20178	21934	22007	32064	32064					-0.0030179361078808142
QSAATLFRP	9	Unmodified	_QSAATLFRP_					0	0	0			REV__ENST00000328928.11_1_1:28212433-28212505:+|nuORF	REV__ENST00000328928.11_1_1:28212433-28212505:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.77252197265625	2	495.771991	989.529429	0.056487	2.8005E-05	0.48437	0.00024014	0.54086	0.00026814	495.77218535508064	16.668	0.15367	16.668	16.605	16.759	0					12	5	3	0	0	0	0.071197	1	3843	3843		87.754	5.4493	1	264960	+		31668	18371	21935	22008	32065	32065					0.034245896460333825
QSAFLADKA	9	Unmodified	_QSAFLADKA_					0	0	0			REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.75213623046875	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.169	1	26.169	25.669	26.669	0								0	0	0	0.31785	1	8387	8387		31.634	2.4847	1		+		31669	15837	21936	22009	32066	32066					0.010131945177931811
QSAPKESFPTL	11	Unmodified	_QSAPKESFPTL_					0	0	0		ENST00000476146.5_1_20:34043137-34046179:+|nuORF	ENST00000476146.5_1_20:34043137-34046179:+|nuORF	ENST00000476146.5_1_20:34043137-34046179:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.8147583007812	2	602.814053	1203.61355	0.34592	0.00020853	0.86893	0.0005238	1.2149	0.00073233	602.8146183494408	17.524	0.19753	17.524	17.459	17.657	0					15	6	4	0	0	0	0.33569	1	4398	4398		49.536	3.5638	1	482430			31670	9905	21937	22010	32067	32067					0.019890759522922963
QSARLAEE	8	Unmodified	_QSARLAEE_					0	0	0			REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.70440673828125	2	452.230156	902.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.07	1	15.07	14.57	15.57	0								0	0	0	1.7419	1	3309	3309		35.618	0	1		+		31671	15156	21938	22011	32068	32068					-0.009365665216705565
QSASMGSAPV	10	Unmodified	_QSASMGSAPV_					0	0	0			REV__ENST00000399767.5_1_22:18226574-18257190:-|nuORF	REV__ENST00000399767.5_1_22:18226574-18257190:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.71905517578125	2	467.718567	933.422581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.576	1	14.576	14.076	15.076	0								0	0	0	0.4162	1	3181	3181		25.574	1.3713	1		+		31672	18938	21939	22012	32069	32069					-0.04679328630629698
QSASPLLHGEK	11	Unmodified	_QSASPLLHGEK_					0	0	0		ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.8123779296875	2	583.811845	1165.60914	0.47134	0.00027517	-0.20594	-0.00012023	0.2654	0.00015494	583.811738753494	21.711	0.23768	21.711	21.64	21.878	0					24	7	4	0	0	0	0.13158	1	6012	6012		93.598	16.28	1	2823200			31673	10613	21940	22013	32070	32070					0.032956115293927724
QSASPLLHGEK	11	Unmodified	_QSASPLLHGEK_					0	0	0		ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.8121948242188	2	583.811845	1165.60914	0.016289	9.5099E-06	-0.15119	-8.8265E-05	-0.1349	-7.8755E-05	583.8117173692128	22.026	0.39703	22.026	21.898	22.295	0					28	9	5	0	0	0	0.058993	1	7076	7076		104.01	15.837	1	16437000			31674	10613	21940	22013	32071	32071					0.032956115293927724
QSASPLLHGEK	11	Unmodified	_QSASPLLHGEK_					0	0	0		ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.8117065429688	2	583.811845	1165.60914	-0.0048063	-2.806E-06	0.28572	0.0001668	0.28091	0.000164	583.8118962306899	21.738	0.2928	21.738	21.657	21.949	0					24	8	5	0	0	0	0.071119	1	6277	6277		99.013	35.479	1	3248400			31675	10613	21940	22013	32072	32072					0.032956115293927724
QSASPLLHGEK	11	Unmodified	_QSASPLLHGEK_					0	0	0		ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	ENST00000550178.1_1_12:120933958-120934105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.8119506835938	2	583.811845	1165.60914	-0.28314	-0.0001653	0.15223	8.8876E-05	-0.1309	-7.6424E-05	583.8119047247238	21.947	0.70871	21.947	21.842	22.55	0					34	14	5	0	0	0	0.058993	1	7341	7341		93.598	0	1	15286000			31676	10613	21940	22013	32073	32073					0.032956115293927724
QSASSKQKK	9	Unmodified	_QSASSKQKK_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1;ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENSG00000011258|ENST00000586178|MBTD1;ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENSG00000011258|ENST00000586178|MBTD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.281982421875	2	496.28018	990.545808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.165	1	15.165	14.665	15.665	0								0	0	0	0.25587	1	4091	4091		42.864	1.4377	1				31677	1046;10907	21941	22014	32074	32074					0.0501567081214489
QSAVKSLKRPL	11	Unmodified	_QSAVKSLKRPL_					0	0	0		nc|ENSG00000152601|Q9NR56|MBNL1	nc|ENSG00000152601|Q9NR56|MBNL1	nc|ENSG00000152601|Q9NR56|MBNL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.883544921875	2	613.882604	1225.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.517	1	10.517	10.017	11.017	0								0	0	0	0.30675	1	2017	2017		51.193	14.746	1				31678	11585	21942	22015	32075	32075					0.1468102962253397
QSCKNKSSGIE	11	Unmodified	_QSCKNKSSGIE_					0	0	0			REV__ZNF804A|p.K601Sfs*44|1|0.35|ENSG00000170396|chr2:184937193-184937193|A/-|frameshift_variant	REV__ZNF804A|p.K601Sfs*44|1|0.35|ENSG00000170396|chr2:184937193-184937193|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.787109375	2	590.78497	1179.55539	3.181	0.0018793	0.70748	0.00041797	3.8885	0.0022973	590.7853764273509	36.056	0.51315	36.056	35.752	36.265	0					24	10	4	0	0	0	0.046871	1	13962	13962		106.68	18.987	1	5919600	+		31679	16364	21943	22016	32076	32076					-0.027209289646179968
QSCLTAEEH	9	Unmodified	_QSCLTAEEH_					0	0	0			REV__ENSG00000129667|ENST00000675367|RHBDF2	REV__ENSG00000129667|ENST00000675367|RHBDF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.21624755859375	2	509.218931	1016.42331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.101	1	11.101	10.601	11.601	0								0	0	0	0.35899	1	2197	2197		23.042	3.0457	1		+		31680	14556	21944	22017	32077	32077					-0.08424533981599325
QSCTKSQIKT	10	Unmodified	_QSCTKSQIKT_					0	0	0			REV__ENST00000529924.6_2_11:117857829-117857973:+|nuORF	REV__ENST00000529924.6_2_11:117857829-117857973:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2919921875	2	562.29243	1122.57031	1.7868	0.0010047	-1.6389	-0.00092153	0.14794	8.3184E-05	562.291449578915	14.068	0.099321	14.068	14.016	14.115	0					4	2	2	0	0	0	0.536	1	3361	3361		41.427	1.3684	1	101730	+		31681	20035	21945	22018	32078	32078					0.013925629033565201
QSCYIAVAR	9	Carbamidomethyl (C)	_QSC(Carbamidomethyl (C))YIAVAR_	QSC(1)YIAVAR		QSC(96)YIAVAR		0	1	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;HSPH1|p.N45Ifs*43|2|0.34|ENSG00000120694|chr13:31158837-31158837|T/-|frameshift_variant;HSPH1|p.G22Afs*66|1|0.43|ENSG00000120694|chr13:31161518-31161518|C/-|frameshift_variant	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.26953125	2	534.268758	1066.52296	1.1446	0.00061151	0.16439	8.7831E-05	1.309	0.00069934	534.2688847389983	27.872	0.16485	27.872	27.815	27.98	0					6	3	2	0	0	0	0.048471	1	10158	10158		95.815	28.321	1	248960			31682	3184	21946	22019	32079	32079	124				-0.007636715770104274
QSCYIIISK	9	Carbamidomethyl (C)	_QSC(Carbamidomethyl (C))YIIISK_	QSC(1)YIIISK		QSC(46)YIIISK		0	1	0		nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.N832Ifs*17|2|0.4|ENSG00000158987|chr5:131462074-131462074|T/-|frameshift_variant;RAPGEF6|p.L1388*|1|0.25|ENSG00000158987|chr5:131431161-131431161|A/-|frameshift_variant;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2952880859375	2	556.294442	1110.57433	0.55554	0.00030904	0.55949	0.00031124	1.115	0.00062029	556.2947814741539	33.762	0.23671	33.762	33.654	33.891	0					13	6	3	0	0	0	0.34452	1	12944	12944		46.457	8.6453	1	106710			31683	5292	21947	22020	32080	32080	216				0.023466523970455455
QSDGLVWRL	9	Unmodified	_QSDGLVWRL_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2926025390625	2	537.290548	1072.56654	2.0979	0.0011272	0.72887	0.00039161	2.8268	0.0015188	537.2910311080071	18.392	0.8243	18.392	17.992	18.816	0					70	19	6	0	0	0	0.30257	1	5467	5467		51.193	17.271	1	37974000	+		31684	17428	21948	22021	32081	32081					0.033162611917987306
QSDKRGPG	8	Unmodified	_QSDKRGPG_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.71746826171875	2	422.717216	843.419879	-0.21334	-9.0182E-05	-0.46698	-0.0001974	-0.68031	-0.00028758	422.7170290182029	13.259	0.69822	13.259	13.159	13.857	0					32	15	4	0	0	0	0.66372	1	3345	3345		38.806	3.1879	1	6025100	+		31685	17543	21949	22022	32082	32082					-0.008094159732763728
QSEAEKLAK	9	Unmodified	_QSEAEKLAK_					0	0	0		ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2294616699219	2	502.274564	1002.53457	1.1466	0.00057591	-2.2839	-0.0011472	-1.1373	-0.00057125	502.27356874328603	14.851	0.56963	14.851	14.794	15.364	0					13	11	2	0	0	0	0.27123	1	3967	3967		23.523	0	1	160430			31686	4764	21950	22023	32083	32083					0.033408487179940494
QSEERGAQSRF	11	Unmodified	_QSEERGAQSRF_					0	0	0			REV__ENST00000582081.5_1_17:62576965-62577022:-|nuORF	REV__ENST00000582081.5_1_17:62576965-62577022:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.2080078125	3	432.209335	1293.60618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.277	1	24.277	23.777	24.777	0								0	0	0	0.34471	1	7142	7142		45.908	11.822	1		+		31687	20461	21951	22024	32084	32084					-0.028882635954460056
QSEERVLAY	9	Unmodified	_QSEERVLAY_					0	0	0			REV__ENSG00000198812|ENST00000361484|LRRC10	REV__ENSG00000198812|ENST00000361484|LRRC10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7783203125	2	547.77747	1093.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.069	1	40.069	39.569	40.569	0								0	0	0	0.29774	1	15781	15781		35.618	0	1		+		31688	17435	21952	22025	32085	32085					-0.0026405277033063612
QSESEDTLP	9	Unmodified	_QSESEDTLP_					0	0	0		ENSG00000116095|ENST00000234453|PLEKHA3	ENSG00000116095|ENST00000234453|PLEKHA3	ENSG00000116095|ENST00000234453|PLEKHA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.22100830078125	2	503.222194	1004.42983	0.075861	3.8175E-05	-2.9103	-0.0014645	-2.8345	-0.0014264	503.22092016478507	33.341	0.40046	33.341	33.233	33.634	0					17	9	3	0	0	0	0.54267	1	12754	12754		27.882	0	1	137530			31689	2959	21953	22026	32086	32086					-0.07220317549217725
QSFDSALQSVK	11	Unmodified	_QSFDSALQSVK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.8106689453125	2	605.309135	1208.60372	-0.46324	-0.00028041	0.9382	0.0005679	0.47496	0.0002875	605.3098311725238	35.849	0.12382	35.849	35.779	35.903	0					5	3	2	0	0	0	0.45905	1	13471	13471		47.228	7.9748	1	95266			31690	5044	21954	22027	32087	32087					0.007758879468838131
QSFEKEEKP	9	Unmodified	_QSFEKEEKP_					0	0	0		nc|ENSG00000048991|Q15032-2|R3HDM1;R3HDM1|p.A971Lfs*26|1|0.4|ENSG00000048991|chr2:135722514-135722514|A/-|frameshift_variant;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.2742919921875	2	561.277303	1120.54005	-0.9033	-0.000507	-3.811	-0.002139	-4.7143	-0.002646	561.2747242673776	34.707	0.18088	34.707	34.637	34.818	0					10	6	2	0	0	0	0.55379	1	12306	12306		26.693	1.1189	1	64566			31691	1235	21955	22028	32088	32088					-0.015394724901852896
QSFFTITQK	9	Unmodified	_QSFFTITQK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000534922.5_1_12:133202008-133209092:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2930908203125	2	550.292756	1098.57096	1.8343	0.0010094	-0.20955	-0.00011532	1.6248	0.00089409	550.2924111878843	38.873	0.22951	38.873	38.786	39.015	0					16	8	3	0	0	0	0.36135	1	14777	14777		45.022	4.964	1	266380			31692	6644	21956	22029	32089	32089					0.02561725614691568
QSFFTITQK	9	Unmodified	_QSFFTITQK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000534922.5_1_12:133202008-133209092:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2932739257812	2	550.292756	1098.57096	0.60926	0.00033527	0.24024	0.0001322	0.8495	0.00046748	550.2926912234286	38.801	0.2588	38.801	38.695	38.953	0					11	5	3	0	0	0	0.3269	1	15273	15273		47.96	7.1814	1	174170			31693	6644	21956	22029	32090	32090					0.02561725614691568
QSFFTITQK	9	Unmodified	_QSFFTITQK_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000534922.5_1_12:133202008-133209092:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.293212890625	2	550.292756	1098.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.806	1	38.806	38.306	39.306	0								0	0	0	0.10497	1	15287	15287		70.399	20.957	1				31694	6644	21956	22029	32091	32091					0.02561725614691568
QSFIFCYF	8	Unmodified	_QSFIFCYF_					0	0	0			REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7409057617188	2	527.738771	1053.46299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.438	1	10.438	9.9382	10.938	0								0	0	0	1.7419	1	1991	1991		13.775	1.5685	1		+		31695	21799	21957	22030	32092	32092					-0.06160362240234463
QSFLVHSQ	8	Unmodified	_QSFLVHSQ_					0	0	0			REV__OR5B3|p.V38Gfs*26|1|0.4|ENSG00000172769|chr11:58403297-58403298|-/C|frameshift_variant	REV__OR5B3|p.V38Gfs*26|1|0.4|ENSG00000172769|chr11:58403297-58403298|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2444152832031	2	473.243067	944.47158	2.4079	0.0011395	0.76255	0.00036087	3.1705	0.0015004	473.2433965439962	18.694	0.11596	18.694	18.636	18.752	0					4	2	2	0	0	0	0.32597	1	5653	5653		79.713	2.395	1	1595800	+		31696	21321	21958	22031	32093	32093					-0.0028767227937578355
QSFPSGGAAVP	11	Unmodified	_QSFPSGGAAVP_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2538757324219	2	509.253631	1016.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.583	1	33.583	33.083	34.083	0								0	0	0	0.30435	1	11802	11802		51.528	16.376	1				31697	4164	21959	22032	32094	32094					-0.014877069705221402
QSFPYVSQ	8	Unmodified	_QSFPYVSQ_					0	0	0			REV__ZNF37A|p.G296Efs*135|1|0.11|ENSG00000075407|chr10:38118034-38118034|G/-|frameshift_variant	REV__ZNF37A|p.G296Efs*135|1|0.11|ENSG00000075407|chr10:38118034-38118034|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2282409667969	2	478.229625	954.444697	-0.65262	-0.0003121	-1.7941	-0.00085798	-2.4467	-0.0011701	478.2286560649393	24.734	0.3988	24.734	24.58	24.979	0					21	8	4	0	0	0	0.36488	1	8558	8558		75.043	8.614	1	967030	+		31698	13232	21960	22033	32095	32095					-0.03434780890563616
QSFQTRFLL	9	Unmodified	_QSFQTRFLL_					0	0	0		ENST00000392857.9_1_2:148696816-148705705:-|nuORF	ENST00000392857.9_1_2:148696816-148705705:-|nuORF	ENST00000392857.9_1_2:148696816-148705705:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.3119506835938	2	570.314023	1138.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.955	1	30.955	30.455	31.455	0								0	0	0	0.34598	1	10214	10214		25.574	0	1				31699	9149	21961	22034	32096	32096					0.04973120742965875
QSFTDLNK	8	Unmodified	_QSFTDLNK_					0	0	0			REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7401428222656	2	476.740357	951.46616	0.0045427	2.1657E-06	0.28943	0.00013798	0.29397	0.00014015	476.7404445420342	27.246	0.17872	27.246	27.18	27.358	0					12	7	2	0	0	0	0.66989	1	8376	8376		37.812	2.1932	1	91301	+		31700	19068	21962	22035	32097	32097					-0.011513958618593279
QSGALSLTT	9	Unmodified	_QSGALSLTT_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2347106933594	2	439.234907	876.455261	-3.0853	-0.0013552	2.7192	0.0011944	-0.3661	-0.0001608	439.2360835182969	19.949	0.19071	19.949	19.86	20.051	0					6	4	2	0	0	0	0.37197	1	5513	5513		44.117	1.6423	1	99854			31701	11515	21963	22036	32098	32098					0.012092017638565267
QSGEFEKR	8	Unmodified	_QSGEFEKR_					0	0	0		ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-3|APC;nc|ENSG00000134982|P25054-2|APC	ENSG00000134982|ENST00000257430|APC	ENSG00000134982|ENST00000257430|APC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7435302734375	2	490.743431	979.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.019	1	24.019	23.519	24.519	0								0	0	0	1.7419	1	7030	7030		24.519	0	1				31702	3953	21964	22037	32099	32099					-0.01824877630338051
QSGLASCFLQ	10	Unmodified	_QSGLASCFLQ_					0	0	0			REV__ENST00000462722.5_1_9:131597926-131600079:-|nuORF	REV__ENST00000462722.5_1_9:131597926-131600079:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.26904296875	2	527.255317	1052.49608	3.4718	0.0018305	2.7036	0.0014255	6.1754	0.003256	527.2565944121822	14.634	0.41949	14.634	14.474	14.894	0					18	8	3	0	0	0	0.39827	1	3651	3651		56.434	3.0823	1	1241600	+		31703	19388	21965	22038	32100	32100					-0.02806780188166158
QSGLPQPV	8	Unmodified	_QSGLPQPV_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;ITSN1|p.P1076Tfs*2|1|0.25|ENSG00000205726|chr21:33826852-33826853|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;CON__ENSEMBL:ENSBTAP00000001528;ITSN1|p.L158Hfs*3|1|0.06|ENSG00000205726|chr21:33750268-33750269|-/A|frameshift_variant;ITSN1|p.L158Pfs*3|1|0.4|ENSG00000205726|chr21:33750261-33750262|-/C|frameshift_variant	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.2266845703125	2	413.226885	824.439217	-0.41366	-0.00017094	0.075255	3.1097E-05	-0.33841	-0.00013984	413.22686477226796	23.875	0.21529	23.875	23.732	23.947	0					9	4	3	0	0	0	0.60719	1	8152	8152		47.916	1.9636	1	543830		+	31704	7757	21966	22039	32101	32101					0.019975403176204054
QSGRMTAAD	9	Unmodified	_QSGRMTAAD_					0	0	0		ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant;ENSG00000105278|ENST00000262961|ZFR2;nc|ENSG00000105278|Q9UPR6-3|ZFR2;ZFR2|p.P188Rfs*239|1|0.22|ENSG00000105278|chr19:3831695-3831695|G/-|frameshift_variant;ZFR2|p.K352Nfs*75|1|0.42|ENSG00000105278|chr19:3825387-3825387|T/-|frameshift_variant	ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7143249511719	2	468.713816	935.413079	0.025929	1.2153E-05	0.21765	0.00010201	0.24358	0.00011417	468.71388886090045	28.951	1.0592	28.951	28.853	29.912	0					79	39	4	0	0	0	0.56424	1	9376	9376		25.574	25.574	1	2425900			31705	2341	21967	22040	32102	32102					-0.05721096916170154
QSGTALFR	8	Unmodified	_QSGTALFR_					0	0	0		nc|ENSG00000172824|Q5XG92-4|CES4A;ENST00000535543.5_1_16:67034893-67043042:+|nuORF;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A	nc|ENSG00000172824|Q5XG92-4|CES4A	nc|ENSG00000172824|Q5XG92-4|CES4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.2372741699219	2	440.237784	878.461016	-1.0387	-0.00045729	0.8565	0.00037706	-0.18222	-8.0221E-05	440.2382286884354	15.567	0.20053	15.567	15.451	15.652	0					11	7	2	0	0	0	0.74405	1	3581	3581		27.882	1.1893	1	90050			31706	6387	21968	22041	32103	32103					0.016923450661806783
QSGVALLAGL	10	Unmodified	_QSGVALLAGL_					0	0	0			REV__ENSG00000175121|ENST00000372789|WFDC5	REV__ENSG00000175121|ENST00000372789|WFDC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7765197753906	2	464.776742	927.538931	-1.0934	-0.0005082	0.70459	0.00032748	-0.38884	-0.00018072	464.7769502126078	27.144	0.25989	27.144	26.994	27.254	0					11	5	3	0	0	0	0.54197	1	9812	9812		40.778	0.20554	1	408800	+		31707	16604	21969	22042	32104	32104					0.07226357931563143
QSHFKEIK	8	Unmodified	_QSHFKEIK_					0	0	0			REV__ENSG00000143742|ENST00000304786|SRP9	REV__ENSG00000143742|ENST00000304786|SRP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7799377441406	2	508.779816	1015.54508	1.3299	0.00067663	-0.73087	-0.00037185	0.59904	0.00030478	508.779170159976	12.512	0.28481	12.512	12.415	12.7	0					14	7	3	0	0	0	0.62915	1	2702	2702		44.377	0.26039	1	133200	+		31708	15205	21970	22043	32105	32105					0.03792876163095116
QSHGWGQSPG	10	Unmodified	_QSHGWGQSPG_					0	0	0			REV__ENST00000393892.7_1_17:40126102-40126558:+|nuORF	REV__ENST00000393892.7_1_17:40126102-40126558:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.730224609375	2	520.730855	1039.44716	0.071778	3.7377E-05	-1.712	-0.00089149	-1.6402	-0.00085412	520.7301255973653	12.469	0.41015	12.469	12.347	12.758	0					31	13	4	0	0	0	0.59277	1	2633	2633		35.152	4.6484	1	2851400	+		31709	18857	21971	22044	32106	32106					-0.07098932432882066
QSHLFQSH	8	Unmodified	_QSHLFQSH_					0	0	0			REV__TMEM88|p.R73H|1|0.19|ENSG00000167874|chr17:7855452-7855452|G/A|missense_variant	REV__TMEM88|p.R73H|1|0.19|ENSG00000167874|chr17:7855452-7855452|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2399597167969	2	492.238316	982.462078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.585	1	12.585	12.085	13.085	0								0	0	0	1.7419	1	2713	2713		66.429	0	1		+		31710	21655	21972	22045	32107	32107					-0.02985440564907549
QSHLRLTLK	9	Unmodified	_QSHLRLTLK_					0	0	0		ENSG00000131864|ENST00000254181|USP29;USP29|p.V357Sfs*21|1|0.27|ENSG00000131864|chr19:57129738-57129738|A/-|frameshift_variant	ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.3353881835938	2	548.33529	1094.65603	0.3989	0.00021873	0.23006	0.00012615	0.62896	0.00034488	548.3354571708788	19.784	0.21998	19.784	19.731	19.951	0					16	7	4	0	0	0	0.1424	1	5411	5411		69.628	7.5202	1	533870			31711	3746	21973	22046	32108	32108					0.11248515871147902
QSIEEREKL	9	Unmodified	_QSIEEREKL_					0	0	0		ENST00000475506.1_1_1:17354162-17371284:-|nuORF;ENSG00000117118|ENST00000375499|SDHB	ENST00000475506.1_1_1:17354162-17371284:-|nuORF	ENST00000475506.1_1_1:17354162-17371284:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3034057617188	2	566.303852	1130.59315	0.25445	0.00014409	-0.93861	-0.00053154	-0.68417	-0.00038745	566.3034639942925	23.302	0.27825	23.302	23.123	23.401	0					18	6	3	0	0	0	0.026538	1	7708	7708		112.41	0.30369	1	1371700			31712	3019	21974	22047	32109	32109					0.033079052924676944
QSIHLRMA	8	Unmodified	_QSIHLRMA_					0	0	0			REV__ENSG00000204843|ENST00000628224|DCTN1	REV__ENSG00000204843|ENST00000628224|DCTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2611389160156	2	478.260736	954.50692	-0.28329	-0.00013548	0.76793	0.00036727	0.48465	0.00023179	478.2612116396149	17.419	0.44455	17.419	17.29	17.735	0					24	11	5	0	0	0	0.67394	1	4903	4903		37.159	0	1	4001100	+		31713	17503	21975	22048	32110	32110					0.027846669767768617
QSIKLDQDM	9	Unmodified	_QSIKLDQDM_					0	0	0			REV__ENST00000490458.1_1_22:21213398-21224822:+|nuORF	REV__ENST00000490458.1_1_22:21213398-21224822:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2659301757812	2	539.265881	1076.51721	-0.12832	-6.9197E-05	-3.8091	-0.0020541	-3.9374	-0.0021233	539.2650841359921	39.263	0.19147	39.263	39.175	39.367	0					18	11	3	0	0	0	0.13726	1	13204	13204		70.816	15.312	1	111060	+		31714	13503	21976	22049	32111	32111					-0.01798814879339261
QSILAKQQK	9	Unmodified	_QSILAKQQK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.315673828125	2	522.314023	1042.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.202	1	12.202	11.702	12.702	0								0	0	0	0.27521	1	2355	2355		40.778	1.5253	1				31715	6220	21977	22050	32112	32112					0.0938912074293512
QSITKDKK	8	Unmodified	_QSITKDKK_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2709045410156	2	474.279649	946.544745	0.28362	0.00013451	-1.5534	-0.00073673	-1.2698	-0.00060222	474.2792121563272	15.501	0.91638	15.501	15.117	16.033	0					34	22	2	0	0	0	0.70598	1	3854	3854		32.812	0	1	82349			31716	7269	21978	22051	32113	32113					0.06933456443221075
QSITKDKK	8	Unmodified	_QSITKDKK_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2792663574219	2	474.279649	946.544745	0.60876	0.00028872	-1.3027	-0.00061784	-0.69392	-0.00032911	474.2791681359458	11.957	5.5556	11.957	11.762	17.318	0					339	121	5	0	0	0	0.28427	1	3587	3587		87.754	0.057861	1	515490000			31717	7269	21978	22051	32114	32114					0.06933456443221075
QSKALDWDIT	10	Unmodified	_QSKALDWDIT_					0	0	0			REV__ENST00000395395.6_1_9:97062480-97062831:+|nuORF	REV__ENST00000395395.6_1_9:97062480-97062831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7991333007812	2	588.798403	1175.58225	1.4643	0.0008622	-0.26264	-0.00015464	1.2017	0.00070756	588.7982827487798	17.106	0.90858	17.106	16.996	17.904	0					55	18	5	0	0	0	0.14893	1	5008	5008		65.465	3.358	1	5669500	+		31718	18876	21979	22052	32115	32115					0.0014850291818220285
QSKAVGQDTL	10	Unmodified	_QSKAVGQDTL_					0	0	0		nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.77783203125	2	523.77747	1045.54039	0.51523	0.00026987	-0.093011	-4.8717E-05	0.42222	0.00022115	523.7773512261585	31.586	0.16297	31.586	31.5	31.663	0					13	6	3	0	0	0	0.31613	1	10472	10472		65.465	3.358	1	175200			31719	3382	21980	22053	32116	32116					0.019439472296880922
QSKIQEVV	8	Unmodified	_QSKIQEVV_					0	0	0			REV__ENSG00000137822|ENST00000564079|TUBGCP4	REV__ENSG00000137822|ENST00000564079|TUBGCP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.76580810546875	2	465.766374	929.518196	0.070142	3.267E-05	-0.93056	-0.00043343	-0.86042	-0.00040076	465.76596271973517	26.603	0.22069	26.603	26.508	26.729	0					9	7	2	0	0	0	0.66372	1	8099	8099		38.806	6.8513	1	112140	+		31720	14940	21981	22054	32117	32117					0.05061767551910634
QSKLPIQS	8	Unmodified	_QSKLPIQS_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7612609863281	2	450.761092	899.507631	0.016767	7.5578E-06	-0.091189	-4.1105E-05	-0.074423	-3.3547E-05	450.76104072344197	22.018	0.34713	22.018	21.878	22.225	0					15	10	3	0	0	0	0.26795	1	6141	6141		93.143	6.2617	1	173430	+		31721	16144	21982	22055	32118	32118					0.053857848974644185
QSKLSLKGA	9	Unmodified	_QSKLSLKGA_					0	0	0			REV__ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant	REV__ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.28192138671875	2	466.282192	930.549831	-0.6243	-0.0002911	-0.3716	-0.00017327	-0.9959	-0.00046437	466.28200968731755	17.169	1.1387	17.169	17.071	18.209	0					76	29	5	0	0	0	0.10915	1	4356	4356		77.318	0	1	46212000	+		31722	22318	21983	22056	32119	32119					0.08177760305841275
QSKMRANNQK	10	Unmodified	_QSKMRANNQK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.8150634765625	2	602.814396	1203.61424	0.33492	0.00020189	0.65406	0.00039428	0.98898	0.00059617	602.8147922839287	17.777	0.62458	17.777	17.668	18.292	0					29	12	5	0	0	0	0.22691	1	5326	5326		37.812	37.812	1	3212500			31723	2899	21984	22057	32120	32120					0.020575921203317193
QSKNISVII	9	Unmodified	_QSKNISVII_					0	0	0			REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3028869628906	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.253	1	41.253	40.753	41.753	0								0	0	0	0.25587	1	14559	14559		42.864	2.0861	1		+		31724	21982	21985	22058	32121	32121					0.09142315994370165
QSKPSKKP	8	Unmodified	_QSKPSKKP_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2685852050781	2	450.269084	898.523616	-0.10038	-4.5197E-05	-0.2406	-0.00010834	-0.34098	-0.00015353	450.26891952888076	15.038	0.21951	15.038	14.893	15.113	0					7	4	2	0	0	0	0.2498	1	4030	4030		101.6	2.9713	1	95828	+		31725	15469	21986	22059	32122	32122					0.07029491134369437
QSLAALLNK	9	Unmodified	_QSLAALLNK_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2;MSH2|p.K334T|1|0.21|ENSG00000095002|chr2:47416354-47416354|A/C|missense_variant;MSH2|p.R382Ifs*26|1|0.23|ENSG00000095002|chr2:47429809-47429821|CGTCGATTCCCAG/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.28973388671875	2	479.290017	956.565481	-0.31443	-0.0001507	-0.73642	-0.00035296	-1.0508	-0.00050366	479.2897982894305	18.201	0.27452	18.201	18.002	18.277	0					11	6	2	0	0	0	0.098791	1	4713	4713		79.713	5.4575	1	206060			31726	1891	21987	22060	32123	32123					0.0854604682289164
QSLANQQFTY	10	Unmodified	_QSLANQQFTY_					0	0	0			REV__ENSG00000105996|ENST00000222718|HOXA2	REV__ENSG00000105996|ENST00000222718|HOXA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2909545898438	2	600.288202	1198.56185	3.1189	0.0018723	0.085178	5.1131E-05	3.2041	0.0019234	600.2882310154995	38.083	4.4869	38.083	37.92	42.407	0					281	102	5	0	0	0	0.59277	1	15955	15955		35.152	0.97948	1	43019000	+		31727	13806	21988	22061	32124	32124					-0.029486677416116436
QSLANQQFTY	10	Unmodified	_QSLANQQFTY_					0	0	0			REV__ENSG00000105996|ENST00000222718|HOXA2	REV__ENSG00000105996|ENST00000222718|HOXA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.7935180664062	2	600.288202	1198.56185	3.1217	0.0018739	0.67453	0.00040491	3.7963	0.0022789	600.2884781235227	45.355	1.0959	45.355	44.654	45.75	0					74	45	2	0	0	0	0.49411	1	18006	18006		45.972	5.1941	1	87189	+		31728	13806	21988	22061	32125	32125					-0.029486677416116436
QSLFLLVRCL	10	Carbamidomethyl (C)	_QSLFLLVRC(Carbamidomethyl (C))L_	QSLFLLVRC(1)L		QSLFLLVRC(60)L		0	1	0			REV__ENST00000561356.1_1_15:102191577-102192564:-|nuORF	REV__ENST00000561356.1_1_15:102191577-102192564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	624.8595581054688	2	624.860283	1247.70601	0.18495	0.00011557	-0.062156	-3.8839E-05	0.1228	7.6732E-05	625.3619056860238	21.532	0.14818	21.532	21.431	21.579	0					15	6	3	0	0	0	0.36476	1	5928	5928		60.118	11.517	1	139550	+		31729	16972	21989	22062	32126	32126	603				0.0920688248481838
QSLGDAFPELK	11	Unmodified	_QSLGDAFPELK_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.8148803710938	2	602.814053	1203.61355	0.77286	0.00046589	0.66827	0.00040284	1.4411	0.00086873	602.8143533383898	17.769	0.421	17.769	17.684	18.105	0					20	8	3	0	0	0	0.27262	1	5360	5360		48.602	0	1	1103500			31730	1843	21990	22063	32127	32127					0.01989075952269559
QSLHLQWNQ	9	Unmodified	_QSLHLQWNQ_					0	0	0			REV__ENST00000373115.4_1_10:73772609-73772870:+|nuORF	REV__ENST00000373115.4_1_10:73772609-73772870:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.29296875	2	577.291079	1152.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.782	1	13.782	13.282	14.282	0								0	0	0	0.30009	1	2740	2740		27.882	13.745	1		+		31731	18680	21991	22064	32128	32128					-0.0025752443928013236
QSLKAMRP	8	Unmodified	_QSLKAMRP_					0	0	0		ENST00000320982.3_1_22:30886096-30887579:-|nuORF;ENST00000321205.9_1_22:30886096-30899699:-|nuORF;ENSG00000133488|ENST00000255858|SEC14L4	ENST00000320982.3_1_22:30886096-30887579:-|nuORF	ENST00000320982.3_1_22:30886096-30887579:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.76580810546875	2	465.763112	929.511671	4.0627	0.0018923	2.2216	0.0010347	6.2843	0.002927	465.7644009864494	26.612	0.15265	26.612	26.525	26.678	0					8	5	2	0	0	0	0.72381	1	8397	8397		30.504	7.4612	1	43311			31732	3859	21992	22065	32129	32129					0.04409551119533717
QSLKDCISK	9	Unmodified	_QSLKDCISK_					0	0	0			REV__tr|U7SWH6|U7SWH6_FUSNUDUF4130domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01046PE=4SV=1	REV__tr|U7SWH6|U7SWH6_FUSNUDUF4130domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01046PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2711486816406	2	511.270967	1020.52738	0.35653	0.00018229	-0.24451	-0.00012501	0.11203	5.7277E-05	511.2710081392795	29.464	0.13301	29.464	29.415	29.548	0					6	3	2	0	0	0	0.14578	1	9925	9925		68.846	1.3525	1	265380	+		31733	22004	21993	22066	32130	32130					0.01793792845921871
QSLLDLNKY	9	Unmodified	_QSLLDLNKY_					0	0	0			REV__ENSG00000154710|ENST00000284957|RABGEF1	REV__ENSG00000154710|ENST00000284957|RABGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2987060546875	2	547.298039	1092.58152	1.8251	0.00099888	-3.092	-0.0016923	-1.2669	-0.00069339	547.297906093232	34.999	0.28504	34.999	34.863	35.148	0					21	8	4	0	0	0	0.27249	1	13541	13541		52.937	3.4007	1	324120	+		31734	15571	21994	22067	32131	32131					0.0389370826915183
QSLLDTLSAIG	11	Unmodified	_QSLLDTLSAIG_					0	0	0			REV__NIPBL|p.N24S|1|0.48|ENSG00000164190|chr5:36955478-36955478|A/G|missense_variant	REV__NIPBL|p.N24S|1|0.48|ENSG00000164190|chr5:36955478-36955478|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.3094482421875	2	559.308603	1116.60265	1.2867	0.00071964	0.86321	0.0004828	2.1499	0.0012024	559.309091096759	23.619	0.45165	23.619	23.397	23.849	0					25	16	3	0	0	0	0.16685	1	6851	6851		78.264	4.0988	1	309120	+		31735	21289	21995	22068	32132	32132					0.04901673577978727
QSLMMKKSA	9	Unmodified	_QSLMMKKSA_					0	0	0			REV__ZNF740|p.T80Dfs*3|1|0.31|ENSG00000139651|chr12:53185457-53185458|-/A|frameshift_variant	REV__ZNF740|p.T80Dfs*3|1|0.31|ENSG00000139651|chr12:53185457-53185458|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.27099609375	2	512.269912	1022.52527	0.0046539	2.3841E-06	2.1992	0.0011266	2.2039	0.001129	512.2710953537602	13.779	0.28483	13.779	13.613	13.897	0					13	7	2	0	0	0	0.40353	1	3220	3220		41.427	1.3684	1	373670	+		31736	15040	21996	22069	32133	32133					0.014910408364698924
QSLNLDRSRQI	11	Unmodified	_QSLNLDRSRQI_					0	0	0			REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	665.3648071289062	2	665.365307	1328.71606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.888	1	32.888	32.388	33.388	0								0	0	0	0.42918	1	12537	12537		30.569	4.5055	1		+		31737	21585	21997	22070	32134	32134					0.06485161743739809
QSLPSIAAIL	10	Unmodified	_QSLPSIAAIL_					0	0	0		ENST00000529244.1_1_11:65786354-65788652:-|nuORF;ENSG00000175294|ENST00000312106|CATSPER1	ENST00000529244.1_1_11:65786354-65788652:-|nuORF	ENST00000529244.1_1_11:65786354-65788652:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.2054138183594	3	338.206092	1011.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.346	1	18.346	17.846	18.846	0								0	0	0	0.4201	1	5615	5615		19.263	1.0006	1				31738	6548	21998	22071	32135	32135					0.0911120013714708
QSLPYHIY	8	Unmodified	_QSLPYHIY_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7611083984375	2	510.761092	1019.50763	1.3806	0.00070514	0.27947	0.00014274	1.66	0.00084788	510.76086647113794	37.9	0.804	37.9	37.739	38.543	0					22	17	2	0	0	0	0.41952	1	14841	14841		68.485	7.5128	1	1280300			31739	2599	21999	22072	32136	32136					-0.0013421510254829627
QSLTLPETL	9	Unmodified	_QSLTLPETL_					0	0	0		ENST00000594688.1_1_19:42929068-42929311:+|nuORF;ENST00000593740.2_1_19:42929059-42989297:+|nuORF	ENST00000594688.1_1_19:42929068-42929311:+|nuORF	ENST00000594688.1_1_19:42929068-42929311:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2791748046875	2	501.279315	1000.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.875	1	30.875	30.375	31.375	0								0	0	0	0.3119	1	11179	11179		32.812	4.9302	1				31740	10987	22000	22073	32137	32137					0.04382617003534506
QSLTVGITVWD	11	Unmodified	_QSLTVGITVWD_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.8840026855469	3	406.883677	1217.6292	0.97878	0.00039825	-0.082065	-3.3391E-05	0.89671	0.00036486	406.8836005765224	17.502	0.28611	17.502	17.421	17.708	0					13	7	3	0	0	0	0.66915	1	4965	4965		30.569	1.0181	1	504510			31741	11703	22001	22074	32138	32138					0.02909362469313237
QSLVQQRAF	9	Unmodified	_QSLVQQRAF_					0	0	0		ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000538334.1_1_12:121766117-121768505:-|nuORF;ENST00000535641.5_1_12:121766117-121773388:-|nuORF;ENST00000535472.5_1_12:121764442-121775147:-|nuORF	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	ENST00000534976.5_1_12:121756302-121773353:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7947387695312	2	538.795998	1075.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.23	1	25.23	24.73	25.73	0								0	0	0	0.27025	1	7823	7823		40.778	1.972	1				31742	1797	22002	22075	32139	32139					0.04267663566088231
QSMQELTE	8	Unmodified	_QSMQELTE_					0	0	0		tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1	tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1	tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2167663574219	2	483.215857	964.417161	-0.14744	-7.1247E-05	2.0599	0.0009954	1.9125	0.00092415	483.21688388143366	13.148	0.2303	13.148	13.034	13.265	0					10	6	3	0	0	0	0.76283	1	2937	2937		25.45	4.9683	1	216380			31743	22760	22003	22076	32140	32140					-0.06647052213122606
QSNETALHY	9	Unmodified	_QSNETALHY_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L;ENST00000555923.1_1_14:81955544-81956809:-|nuORF	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.74658203125	2	531.74617	1061.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.042	1	27.042	26.542	27.542	0								0	0	0	0.30504	1	8292	8292		34.173	5.9183	1				31744	1475	22004	22077	32141	32141					-0.050491988385147124
QSNGPIIYY	9	Unmodified	_QSNGPIIYY_					0	0	0		USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7661743164062	2	527.763832	1053.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.481	1	33.481	32.981	33.981	0								0	0	0	0.3368	1	12818	12818		27.882	0.83493	1				31745	1203	22005	22078	32142	32142					-0.011505363107289668
QSNKLTEEGAK	11	Unmodified	_QSNKLTEEGAK_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	402.2124938964844	3	402.210453	1203.60953	3.456	0.00139	0.80407	0.00032341	4.2601	0.0017134	402.2107852206326	17.54	0.60301	17.54	17.448	18.051	0					38	17	5	0	0	0	0.49805	1	4395	4395		61.765	7.0422	1	2012400	+		31746	12057	22006	22079	32143	32143					0.015869864585511095
QSNKLVELDM	10	Unmodified	_QSNKLVELDM_					0	0	0			REV__ENST00000476798.1_1_6:108041676-108041823:-|nuORF	REV__ENST00000476798.1_1_6:108041676-108041823:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.7994384765625	2	588.800088	1175.58562	-1.759	-0.0010357	0.81075	0.00047737	-0.94827	-0.00055834	588.8005298287129	16.925	0.47509	16.925	16.794	17.27	0					23	13	3	0	0	0	0.08194	1	4100	4100		98.582	21.264	1	508320	+		31747	19544	22007	22080	32144	32144					0.004854297005294939
QSPAKAIPGK	10	Unmodified	_QSPAKAIPGK_					0	0	0			REV__YTHDF2|p.V284I|1|0.26|ENSG00000198492|chr1:28743120-28743120|G/A|missense_variant	REV__YTHDF2|p.V284I|1|0.26|ENSG00000198492|chr1:28743120-28743120|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.86602783203125	3	332.86607	995.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.603	1	23.603	23.103	24.103	0								0	0	0	0.41253	1	7114	7114		25.126	1.6033	1		+		31748	22298	22008	22081	32145	32145					0.07841449197189831
QSPARRRR	8	Unmodified	_QSPARRRR_					0	0	0		ENST00000215912.9_3_22:31688284-31688368:-|nuORF	ENST00000215912.9_3_22:31688284-31688368:-|nuORF	ENST00000215912.9_3_22:31688284-31688368:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.80419921875	2	513.805023	1025.59549	-0.47715	-0.00024516	-1.8087	-0.00092934	-2.2859	-0.0011745	513.8042038270905	11.892	0.6561	11.892	11.813	12.469	0					38	17	3	0	0	0	0.68432	1	2556	2556		35.618	1.4457	1	1024400			31749	8156	22009	22082	32146	32146					0.08371843331474338
QSPGARTW	8	Unmodified	_QSPGARTW_					0	0	0		ENST00000599569.2_1_21:46491968-46492376:-|nuORF	ENST00000599569.2_1_21:46491968-46492376:-|nuORF	ENST00000599569.2_1_21:46491968-46492376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.72900390625	2	451.727584	901.440614	2.5275	0.0011418	0.61884	0.00027955	3.1464	0.0014213	451.72787245368016	19.816	0.22091	19.816	19.706	19.927	0					8	4	2	0	0	0	0.6088	1	6201	6201		47.657	47.657	1	4837400			31750	11026	22010	22083	32147	32147					-0.014048255936245369
QSPIGVSGP	9	Unmodified	_QSPIGVSGP_					0	0	0			REV__ENST00000471466.5_1_5:176730621-176730690:-|nuORF	REV__ENST00000471466.5_1_5:176730621-176730690:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.2244567871094	2	421.224342	840.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.435	1	20.435	19.935	20.935	0								0	0	0	0.19749	1	5745	5745		51.335	1.8939	1		+		31751	19480	22011	22084	32148	32148					0.007532364550115744
QSPKTKKQP	9	Unmodified	_QSPKTKKQP_					0	0	0			REV__EME1|p.K470Rfs*11|1|0.39|ENSG00000154920|chr17:50380373-50380373|A/-|frameshift_variant	REV__EME1|p.K470Rfs*11|1|0.39|ENSG00000154920|chr17:50380373-50380373|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.306640625	2	521.306198	1040.59784	1.4906	0.00077707	-0.30267	-0.00015778	1.188	0.00061929	521.3063095826956	23.301	0.16145	23.301	23.221	23.383	0					6	4	2	0	0	0	0.22377	1	6716	6716		58.782	2.0609	1	141050	+		31752	12794	22012	22085	32149	32149					0.07916834225898128
QSPQGRVM	8	Unmodified	_QSPQGRVM_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7290954589844	2	451.729269	901.443985	-0.32114	-0.00014507	-0.10426	-4.7095E-05	-0.42539	-0.00019216	451.7291688785156	19.561	0.18666	19.561	19.486	19.673	0					8	5	2	0	0	0	0.29152	1	5088	5088		85.359	42.885	1	386160			31753	6170	22013	22086	32150	32150					-0.010678988112545085
QSPQGRVM	8	Unmodified	_QSPQGRVM_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7291259765625	2	451.729269	901.443985	-0.50717	-0.0002291	0.093293	4.2143E-05	-0.41387	-0.00018696	451.729339679885	19.911	0.25341	19.911	19.811	20.064	0					8	5	2	0	0	0	0.2498	1	6100	6100		101.6	42.819	1	2592500			31754	6170	22013	22086	32151	32151					-0.010678988112545085
QSPQGRVM	8	Unmodified	_QSPQGRVM_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7290954589844	2	451.729269	901.443985	-1.1919	-0.00053841	0.82285	0.00037171	-0.36904	-0.00016671	451.7296716130635	19.623	0.21943	19.623	19.517	19.737	0					9	7	2	0	0	0	0.37144	1	5339	5339		74.255	29.878	1	507220			31755	6170	22013	22086	32152	32152					-0.010678988112545085
QSPQGRVM	8	Unmodified	_QSPQGRVM_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7289733886719	2	451.729269	901.443985	-0.35414	-0.00015997	-0.13997	-6.3226E-05	-0.4941	-0.0002232	451.7291503871569	19.8	0.11836	19.8	19.741	19.859	0					4	2	2	0	0	0	0.7126	1	6335	6335		31.955	1.4512	1	156460			31756	6170	22013	22086	32153	32153					-0.010678988112545085
QSPQGRVM	8	Unmodified	_QSPQGRVM_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.72930908203125	2	451.729269	901.443985	-0.10361	-4.6804E-05	-0.081196	-3.6679E-05	-0.18481	-8.3483E-05	451.7293382384222	19.664	0.18176	19.664	19.573	19.755	0					8	4	2	0	0	0	0.49216	1	5376	5376		60.972	21.719	1	372470			31757	6170	22013	22086	32154	32154					-0.010678988112545085
QSPQGRVM	8	Unmodified	_QSPQGRVM_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.72882080078125	2	451.729269	901.443985	0.87667	0.00039602	-2.05	-0.00092604	-1.1733	-0.00053002	451.728488756804	19.833	0.2706	19.833	19.673	19.944	0					14	5	4	0	0	0	0.46013	1	6189	6189		64.207	23.429	1	2969800			31758	6170	22013	22086	32155	32155					-0.010678988112545085
QSPREILAK	9	Unmodified	_QSPREILAK_					0	0	0			REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF	REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.306884765625	2	521.306198	1040.59784	0.33385	0.00017404	0.77399	0.00040348	1.1078	0.00057752	521.3067260315045	23.344	0.18483	23.344	23.246	23.431	0					11	6	3	0	0	0	0.44949	1	7006	7006		37.508	1.1905	1	227480	+		31759	13138	22014	22087	32156	32156					0.07916834225898128
QSPRNSWD	8	Unmodified	_QSPRNSWD_					0	0	0		nc|ENSG00000167528|Q96N77-3|ZNF641;ENSG00000167528|ENST00000547026|ZNF641;nc|ENSG00000167528|Q96N77|ZNF641	nc|ENSG00000167528|Q96N77-3|ZNF641	nc|ENSG00000167528|Q96N77-3|ZNF641	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.22735595703125	2	495.225405	988.436257	0.0095058	4.7075E-06	3.8562	0.0019097	3.8657	0.0019144	495.2277185578399	16.313	0.12237	16.313	16.269	16.391	0					6	5	2	0	0	0	0.68432	1	3690	3690		35.618	7.736	1	38144			31760	5998	22015	22088	32157	32157					-0.05842334807186944
QSPYPYAPQ	9	Unmodified	_QSPYPYAPQ_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23;PTPN23|p.L1014Pfs*68|1|0.36|ENSG00000076201|chr3:47410831-47410832|-/C|frameshift_variant;PTPN23|p.P1258Rfs*2|1|0.28|ENSG00000076201|chr3:47411566-47411566|C/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7483520507812	2	525.748182	1049.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.606	1	17.606	17.106	18.106	0								0	0	0	0.30504	1	4231	4231		34.173	0.25091	1				31761	1556	22016	22089	32158	32158					-0.04095109344825687
QSQAEIRK	8	Unmodified	_QSQAEIRK_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2667541503906	2	480.267073	958.519593	-0.64559	-0.00031005	0.10764	5.1697E-05	-0.53794	-0.00025836	480.267140401293	14.265	0.22068	14.265	14.154	14.375	0					11	4	3	0	0	0	0.25873	1	3496	3496		96.19	0	1	855150			31762	1825	22017	22090	32159	32159					0.03867401640661683
QSQAGALRM	9	Unmodified	_QSQAGALRM_					0	0	0		LTBP2|p.H1816Tfs*32|6|0.37|ENSG00000119681|chr14:74500904-74500904|G/-|frameshift_variant	LTBP2|p.H1816Tfs*32|6|0.37|ENSG00000119681|chr14:74500904-74500904|G/-|frameshift_variant	LTBP2|p.H1816Tfs*32|6|0.37|ENSG00000119681|chr14:74500904-74500904|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2476501464844	2	481.247826	960.481099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.681	1	14.681	14.181	15.181	0								0	0	0	0.30504	1	3707	3707		34.173	2.2177	1				31763	11335	22018	22091	32160	32160					-0.0007222726549116487
QSQKEKKQ	8	Unmodified	_QSQKEKKQ_					0	0	0		ENST00000395442.5_1_10:55568369-55568990:-|nuORF	ENST00000395442.5_1_10:55568369-55568990:-|nuORF	ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2799987792969	2	502.28018	1002.54581	0.052331	2.6285E-05	-0.67487	-0.00033897	-0.62253	-0.00031269	502.27954832304715	15.374	0.20852	15.374	15.242	15.451	0					6	4	2	0	0	0	0.3049	1	4191	4191		82.241	0	1	43602			31764	9193	22019	22092	32161	32161					0.04463670812140208
QSQLQLIEQ	9	Unmodified	_QSQLQLIEQ_					0	0	0			REV__ENSG00000166578|ENST00000416617|IQCD	REV__ENSG00000166578|ENST00000416617|IQCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7954711914062	2	543.793121	1085.57169	1.9927	0.0010836	1.5126	0.00082255	3.5054	0.0019062	543.7939775487625	30.482	2.7945	30.482	30.131	32.926	0					126	56	5	0	0	0	0.10915	1	11442	11442		77.318	0	1	97565000	+		31765	16133	22020	22093	32162	32162					0.032325202637593975
QSQLQLIEQ	9	Unmodified	_QSQLQLIEQ_					0	0	0			REV__ENSG00000166578|ENST00000416617|IQCD	REV__ENSG00000166578|ENST00000416617|IQCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7954711914062	2	543.793121	1085.57169	3.6558	0.001988	-0.23259	-0.00012648	3.4232	0.0018615	543.7929290918379	30.466	0.70166	30.466	30.163	30.865	0					53	14	5	0	0	0	0.028876	1	11245	11245		110.12	0	1	127880000	+		31766	16133	22020	22093	32163	32163					0.032325202637593975
QSQREFTLK	9	Unmodified	_QSQREFTLK_					0	0	0		ENST00000438163.1_1_2:32427889-32428366:+|nuORF	ENST00000438163.1_1_2:32427889-32428366:+|nuORF	ENST00000438163.1_1_2:32427889-32428366:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.8068237304688	2	568.806562	1135.59857	1.6438	0.00093499	-1.3167	-0.00074894	0.32708	0.00018605	568.8057824570925	23.175	0.2668	23.175	23.069	23.335	0					12	5	3	0	0	0	0.023928	1	7832	7832		115.49	22.299	1	797540			31767	9543	22021	22094	32164	32164					0.03619628874935188
QSQVHRGKF	9	Unmodified	_QSQVHRGKF_					0	0	0			REV__ENST00000339950.4_1_1:62902551-62902854:+|nuORF	REV__ENST00000339950.4_1_1:62902551-62902854:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.79541015625	2	543.793789	1085.57303	1.9976	0.0010863	0.068936	3.7487E-05	2.0665	0.0011238	543.7938389938024	30.505	2.6277	30.505	30.221	32.849	0					113	59	2	0	0	0	0.17854	2	11570	11570;11799		64.207	64.207	1	91179000	+		31768	18442	22022	22095	32165;32166	32165					0.03366199143169979
QSRDSPQV	8	Unmodified	_QSRDSPQV_					0	0	0		ENST00000587238.5_1_19:19752858-19754364:-|nuORF;ENST00000591047.1_1_19:19749271-19754364:-|nuORF	ENST00000587238.5_1_19:19752858-19754364:-|nuORF	ENST00000587238.5_1_19:19752858-19754364:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7828674316406	2	458.727781	915.441008	-0.44234	-0.00020291	-0.11561	-5.3034E-05	-0.55795	-0.00025595	458.7277530565974	16.258	0.46979	16.258	15.997	16.466	0					20	9	4	0	0	0	0.5676	1	4383	4383		53.351	7.3995	1	699730			31769	10911	22023	22096	32167	32167					-0.020094506644227295
QSRGASGTRP	10	Unmodified	_QSRGASGTRP_					0	0	0		ENST00000370626.3_1_10:99446706-99446889:-|nuORF	ENST00000370626.3_1_10:99446706-99446889:-|nuORF	ENST00000370626.3_1_10:99446706-99446889:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7662353515625	2	508.765229	1015.5159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.744	1	39.744	39.244	40.244	0								0	0	0	0.39169	1	12893	12893		33.039	2.7217	1				31770	8955	22024	22097	32168	32168					0.008767318667992186
QSRGPGQLAC	10	Unmodified	_QSRGPGQLAC_					0	0	0			REV__ENST00000517958.1_1_5:153783698-153796529:+|nuORF	REV__ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.75103759765625	2	508.750733	1015.48691	1.326	0.0006746	-1.0664	-0.00054254	0.25958	0.00013206	508.75003915217025	12.486	0.16707	12.486	12.415	12.582	0					6	4	2	0	0	0	0.24329	1	2659	2659		52.937	0	1	461440	+		31771	19926	22025	22098	32169	32169					-0.02021128753847279
QSRKRGHT	8	Unmodified	_QSRKRGHT_					0	0	0		PDS5B|p.R1248Q|1|0.23|ENSG00000083642|chr13:32770239-32770239|G/A|missense_variant	PDS5B|p.R1248Q|1|0.23|ENSG00000083642|chr13:32770239-32770239|G/A|missense_variant	PDS5B|p.R1248Q|1|0.23|ENSG00000083642|chr13:32770239-32770239|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2678527832031	2	485.270481	968.52641	-2.9152	-0.0014147	-3.822	-0.0018547	-6.7372	-0.0032694	485.268889405463	11.622	0.082481	11.622	11.581	11.663	0					6	3	2	0	0	0	0.51384	1	2211	2211		58.782	7.4465	1	858170			31772	11919	22026	22099	32170	32170					0.04088759311889589
QSRMATGCLKP	11	Unmodified	_QSRMATGCLKP_					0	0	0			REV__PLEKHA6|p.E155Rfs*80|1|0.15|ENSG00000143850|chr1:204261367-204261367|C/-|frameshift_variant	REV__PLEKHA6|p.E155Rfs*80|1|0.15|ENSG00000143850|chr1:204261367-204261367|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.3048095703125	2	596.302275	1190.59	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.431	1	21.431	20.931	21.931	0								0	0	0	0.34077	1	6152	6152		46.457	11.305	1		+		31773	21385	22027	22100	32171	32171					0.0023261564244876354
QSRSRRVR	8	Unmodified	_QSRSRRVR_					0	0	0			REV__ENST00000450704.1_1_9:46843972-46844976:+|nuORF	REV__ENST00000450704.1_1_9:46843972-46844976:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8114013671875	2	522.810305	1043.60606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.871	1	13.871	13.371	14.371	0								0	0	0	1.7419	1	3475	3475		31.53	4.8369	1		+		31774	19308	22028	22101	32172	32172					0.08599825985879761
QSSASCHSIKP	11	Unmodified	_QSSASCHSIKP_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;nc|ENSG00000141449|Q9C091-4|GREB1L;ENST00000578368.5_1_18:18963479-19048745:+|nuORF;ENST00000584446.5_1_18:18963479-19034595:+|nuORF;GREB1L|p.G1039Qfs*16|1|0.06|ENSG00000141449|chr18:21495754-21495755|GG/-|frameshift_variant;GREB1L|p.T1038Kfs*19|1|0.06|ENSG00000141449|chr18:21495751-21495752|-/AACT|frameshift_variant	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.7743530273438	2	572.774405	1143.53426	-0.1107	-6.3406E-05	0.2039	0.00011679	0.093199	5.3382E-05	572.7745751182846	13.267	0.12369	13.267	13.216	13.34	0					5	3	2	0	0	0	0.69524	1	2989	2989		28.081	0.19925	1	331090			31775	4446	22029	22102	32173	32173					-0.031768942735197925
QSSATLKMR	9	Oxidation (M)	_QSSATLKM(Oxidation (M))R_		QSSATLKM(1)R		QSSATLKM(93)R	0	0	1			REV__ENSG00000283428|ENST00000638102|CCDC195	REV__ENSG00000283428|ENST00000638102|CCDC195	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2727661132812	2	519.274041	1036.53353	-1.3705	-0.00071168	-1.089	-0.00056551	-2.4596	-0.0012772	519.273676537884	17.227	0.2285	17.227	17.183	17.411	0					10	6	3	0	0	0	0.055856	1	4254	4254		93.195	26.766	1	315300	+		31776	17852	22030	22103	32174	32174		668			0.016723110774591987
QSSDPDAPRA	10	Unmodified	_QSSDPDAPRA_					0	0	0			REV__ENST00000166139.8_1_19:682587-683214:+|nuORF	REV__ENST00000166139.8_1_19:682587-683214:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2415771484375	2	522.241252	1042.46795	1.0595	0.0005533	0.053404	2.789E-05	1.1129	0.00058119	522.2415384547913	18.064	0.2707	18.064	18.005	18.275	0					9	5	3	0	0	0	0.54197	1	5518	5518		40.778	2.9666	1	206610	+		31777	17863	22031	22104	32175	32175					-0.051583868439138314
QSSGASCEH	9	Unmodified	_QSSGASCEH_					0	0	0			REV__nc|ENSG00000161640|Q96RL6-2|SIGLEC11	REV__nc|ENSG00000161640|Q96RL6-2|SIGLEC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.17523193359375	2	453.174524	904.334494	-0.41761	-0.00018925	2.3681	0.0010732	1.9505	0.00088391	453.1753635891508	16.004	0.16687	16.004	15.946	16.112	0					5	3	2	0	0	0	0.61124	1	4504	4504		14.865	3.3539	1	76588	+		31778	15782	22032	22105	32176	32176					-0.12149949221259249
QSSHLNVH	8	Unmodified	_QSSHLNVH_					0	0	0		ENSG00000083814|ENST00000317398|ZNF671;ENSG00000270011|ENST00000541595|ZNF559-ZNF177;ENSG00000188629|ENST00000683217|ZNF177	ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.23004150390625	2	461.230491	920.446428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.065	1	17.065	16.565	17.565	0								0	0	0	1.7419	1	5002	5002		35.618	5.1146	1				31779	1702	22033	22106	32177	32177					-0.01697727081955236
QSSHRRKA	8	Unmodified	_QSSHRRKA_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2705383300781	2	485.270481	968.52641	0.84626	0.00041067	-1.0635	-0.00051608	-0.21724	-0.00010542	485.26996383183655	11.905	0.79854	11.905	11.784	12.582	0					47	23	3	0	0	0	0.63077	1	2366	2366		44.117	44.117	1	5786500			31780	6429	22034	22107	32178	32178					0.04088759311889589
QSSLARVVMQH	11	Unmodified	_QSSLARVVMQH_					0	0	0			REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	628.3294677734375	2	628.332421	1254.65029	-2.1533	-0.001353	-2.217	-0.001393	-4.3703	-0.002746	628.3315338733057	34.603	0.19243	34.603	34.557	34.75	0					9	5	2	0	0	0	0.52595	1	12274	12274		42.338	5.8913	1	59758	+		31781	17283	22035	22108	32179	32179					0.03315049297202677
QSSLEDEVV	9	Unmodified	_QSSLEDEVV_					0	0	0			REV__ENST00000453476.1_1_2:60586842-60618443:-|nuORF	REV__ENST00000453476.1_1_2:60586842-60618443:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2410583496094	2	503.240386	1004.46622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.238	1	14.238	13.738	14.738	0								0	0	0	0.14881	1	3649	3649		60.118	8.9256	1		+		31782	19330	22036	22109	32180	32180					-0.03583440652516856
QSSLLTEVLES	11	Unmodified	_QSSLLTEVLES_					0	0	0			REV__ENSG00000132953|ENST00000255305|XPO4	REV__ENSG00000132953|ENST00000255305|XPO4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.21282958984375	3	402.546842	1204.6187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.489	1	38.489	37.989	38.989	0								0	0	0	0.37939	1	14629	14629		41.08	4.7624	1		+		31783	14687	22037	22110	32181	32181					0.02457335024269014
QSSMSQKVE	9	Unmodified	_QSSMSQKVE_					0	0	0			REV__nc|ENSG00000107282|Q02410-2|APBA1	REV__nc|ENSG00000107282|Q02410-2|APBA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2432250976562	2	512.242406	1022.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.653	1	11.653	11.153	12.153	0								0	0	0	0.31838	1	2307	2307		31.53	1.0262	1		+		31784	13850	22038	22111	32182	32182					-0.04007674430442876
QSSSSPPED	9	Unmodified	_QSSSSPPED_					0	0	0			REV__ENSG00000137216|ENST00000323267|TMEM63B	REV__ENSG00000137216|ENST00000323267|TMEM63B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.1930236816406	2	467.193436	932.37232	-0.65656	-0.00030674	-0.2754	-0.00012866	-0.93196	-0.0004354	467.1932003335696	49.662	0.94299	49.662	49.418	50.361	0					130	41	4	0	0	0	0.61124	1	18095	18095		16.473	0	1	3586100	+		31785	14909	22039	22112	32183	32183					-0.09657159754806344
QSSTLNLHK	9	Unmodified	_QSSTLNLHK_					0	0	0		nc|ENSG00000250312|Q3SXZ3-2|ZNF718;ENSG00000250312|ENST00000510175|ZNF718	nc|ENSG00000250312|Q3SXZ3-2|ZNF718	nc|ENSG00000250312|Q3SXZ3-2|ZNF718	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.18914794921875	3	343.189212	1026.54581	0.50683	0.00017394	-0.76501	-0.00026254	-0.25818	-8.8605E-05	343.18898112143586	18.167	0.36006	18.167	18.025	18.385	0					16	8	3	0	0	0	0.39215	1	5268	5268		33.922	0	1	9868800			31786	7988	22040	22113	32184	32184					0.03359670812119475
QSSTLTRHT	9	Unmodified	_QSSTLTRHT_					0	0	0		nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91	nc|ENSG00000167232|Q05481-2|ZNF91	nc|ENSG00000167232|Q05481-2|ZNF91	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7677612304688	2	515.767437	1029.52032	1.221	0.00062976	-0.86259	-0.0004449	0.35842	0.00018486	515.7670841403958	17.615	0.36665	17.615	17.421	17.788	0					30	9	5	0	0	0	0.16002	1	5016	5016		66.429	2.222	1	463620			31787	5980	22041	22114	32185	32185					0.0067419628969673795
QSTAKKSGQK	10	Unmodified	_QSTAKKSGQK_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8006591796875	2	531.798737	1061.58292	3.4163	0.0018168	0.52005	0.00027656	3.9364	0.0020934	531.7987742927484	17.859	0.16401	17.859	17.751	17.915	0					8	3	3	0	0	0	0.35046	1	5244	5244		61.691	0.71934	1	828160			31788	4015	22042	22115	32186	32186					0.054593423579035516
QSTAQFVAML	10	Oxidation (M)	_QSTAQFVAM(Oxidation (M))L_		QSTAQFVAM(1)L		QSTAQFVAM(53)L	0	0	1			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2747192382812	2	556.276249	1110.53795	-0.12271	-6.8259E-05	-2.5912	-0.0014414	-2.7139	-0.0015097	556.2747805729128	12.301	0.08809	12.301	12.254	12.343	0					6	2	3	0	0	0	0.43008	1	2738	2738		52.937	10.072	1	324390	+		31789	14609	22043	22116	32187	32187		554			-0.01290224499643955
QSTGGAGSPL	10	Unmodified	_QSTGGAGSPL_					0	0	0			REV__nc|ENSG00000140463|Q96RK4-3|BBS4	REV__nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7167053222656	2	437.716882	873.41921	-0.40192	-0.00017593	-0.33426	-0.00014631	-0.73618	-0.00032224	437.7167636574576	26.435	0.36235	26.435	26.232	26.594	0					10	7	2	0	0	0	0.2978	1	9473	9473		67.494	1.6905	1	378160	+		31790	12276	22044	22117	32188	32188					-0.02256255412999053
QSTGLAQLI	9	Unmodified	_QSTGLAQLI_					0	0	0			REV__ENST00000515564.5_1_4:152622580-152640660:-|nuORF	REV__ENST00000515564.5_1_4:152622580-152640660:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.76617431640625	2	465.766374	929.518196	0.47414	0.00022084	-0.50337	-0.00023445	-0.02923	-1.3614E-05	465.76603970919234	26.876	0.30565	26.876	26.715	27.021	0					12	7	3	0	0	0	0.13267	1	9325	9325		71.877	3.0906	1	670710	+		31791	13076	22045	22118	32189	32189					0.05061767551910634
QSTIKLTVT	9	Unmodified	_QSTIKLTVT_					0	0	0			REV__ARHGAP21|p.R55I|1|0.32|ENSG00000107863|chr10:24670297-24670297|C/A|missense_variant	REV__ARHGAP21|p.R55I|1|0.32|ENSG00000107863|chr10:24670297-24670297|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.79498291015625	2	495.795132	989.575711	0.94904	0.00047053	-0.44493	-0.0002206	0.5041	0.00024993	495.79528144560703	21.679	0.21848	21.679	21.571	21.789	0					10	4	3	0	0	0	0.4966	1	7110	7110		32.812	4.9302	1	705850	+		31792	12203	22046	22119	32190	32190					0.0805060975745846
QSTRDYEE	8	Unmodified	_QSTRDYEE_					0	0	0			REV__ENST00000579726.5_2_17:61562598-61563979:+|nuORF	REV__ENST00000579726.5_2_17:61562598-61563979:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2205810546875	2	514.219985	1026.42542	1.3498	0.00069407	0.62246	0.00032008	1.9722	0.0010142	514.2204253347139	21.461	0.1683	21.461	21.357	21.526	0					8	3	3	0	0	0	0.41701	1	7136	7136		68.787	6.6794	1	574520	+		31793	20445	22047	22120	32191	32191					-0.08673781972129291
QSTSASSADNI	11	Unmodified	_QSTSASSADNI_					0	0	0			REV__ENST00000510345.2_1_4:111337808-111338090:+|nuORF	REV__ENST00000510345.2_1_4:111337808-111338090:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7806396484375	2	540.743825	1079.4731	0.27779	0.00015021	-0.14255	-7.7084E-05	0.13524	7.3129E-05	540.7437433682169	13.702	0.24657	13.702	13.613	13.859	0					11	6	2	0	0	0	0.38061	1	3150	3150		53.597	7.1401	1	1759600	+		31794	19867	22048	22121	32192	32192					-0.06346127771939791
QSTSGLAII	9	Unmodified	_QSTSGLAII_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;THADA|p.A593Lfs*5|2|0.35|ENSG00000115970|chr2:43572945-43572945|C/-|frameshift_variant;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2529602050781	2	445.2531	888.491647	-0.46159	-0.00020552	0.065162	2.9014E-05	-0.39643	-0.00017651	445.25310819207783	22.597	0.71534	22.597	22.19	22.905	0					34	14	4	0	0	0	0.35045	1	7456	7456		45.952	3.5558	1	1701800			31795	2950	22049	22122	32193	32193					0.04294078660575451
QSVELPRK	8	Unmodified	_QSVELPRK_					0	0	0			REV__PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant	REV__PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7801208496094	2	478.779816	955.545079	0.49884	0.00023883	-0.29261	-0.0001401	0.20622	9.8736E-05	478.7796860230548	16.8	0.59322	16.8	16.375	16.969	0					35	14	3	0	0	0	0.29286	1	4521	4521		84.916	10.66	1	275390	+		31796	13082	22050	22123	32194	32194					0.0655287616308442
QSVELPRK	8	Unmodified	_QSVELPRK_					0	0	0			REV__PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant	REV__PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7790832519531	2	478.779816	955.545079	-0.11579	-5.5438E-05	-0.85714	-0.00041038	-0.97293	-0.00046582	478.7795539299531	16.773	0.69964	16.773	16.28	16.98	0					40	14	4	0	0	0	0.23527	1	4735	4735		133.81	25.725	1	874710	+		31797	13082	22050	22123	32195	32195					0.0655287616308442
QSVGEKPVE	9	Unmodified	_QSVGEKPVE_					0	0	0			REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7530822753906	2	486.753464	971.492375	-0.69625	-0.0003389	0.24477	0.00011914	-0.45148	-0.00021976	486.7534834411804	22.592	0.30962	22.592	22.384	22.693	0					11	6	2	0	0	0	0.18416	1	7657	7657		63.534	2.5619	1	328010	+		31798	20555	22051	22124	32196	32196					0.005488733096171927
QSVGLKLDKI	10	Unmodified	_QSVGLKLDKI_					0	0	0			REV__LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant	REV__LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8369750976562	2	550.837331	1099.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.556	1	37.556	37.056	38.056	0								0	0	0	0.33107	1	12298	12298		45.972	5.1941	1		+		31799	16566	22052	22125	32197	32197					0.11426560574227551
QSVLSPSALMC	11	Carbamidomethyl (C),Oxidation (M)	_QSVLSPSALM(Oxidation (M))C(Carbamidomethyl (C))_	QSVLSPSALMC(1)	QSVLSPSALM(1)C	QSVLSPSALMC(56)	QSVLSPSALM(56)C	0	1	1			REV__ENSG00000187736|ENST00000356853|NHEJ1	REV__ENSG00000187736|ENST00000356853|NHEJ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.7902221679688	2	604.786124	1207.55769	-0.59874	-0.00036211	3.8295	0.002316	3.2308	0.0019539	604.7883630581862	19.832	0.16145	19.832	19.756	19.917	0					8	5	2	0	0	0	0.35529	1	5438	5438		56.434	19.987	1	71801	+		31800	17132	22053	22126	32198	32198	609	655			-0.03778216551177138
QSVMEQNTV	9	Unmodified	_QSVMEQNTV_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2440185546875	2	518.242406	1034.47026	-1.4157	-0.0007337	3.7536	0.0019453	2.3379	0.0012116	518.2442551361556	16.468	0.12187	16.468	16.394	16.516	0					5	3	2	0	0	0	0.5741	1	3922	3922		24.519	1.4767	1	67201			31801	3076	22054	22127	32199	32199					-0.04559674430470295
QSVQEHEV	8	Unmodified	_QSVQEHEV_					0	0	0		TRAF1|p.N275Kfs*8|1|0.26|ENSG00000056558|chr9:120911394-120911395|-/T|frameshift_variant;ENSG00000056558|ENST00000373887|TRAF1	TRAF1|p.N275Kfs*8|1|0.26|ENSG00000056558|chr9:120911394-120911395|-/T|frameshift_variant	TRAF1|p.N275Kfs*8|1|0.26|ENSG00000056558|chr9:120911394-120911395|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.22869873046875	2	478.227613	954.440674	-0.28432	-0.00013597	2.8856	0.00138	2.6013	0.001244	478.2291033945927	20.794	0.4908	20.794	20.685	21.175	0					24	11	4	0	0	0	0.59773	1	6541	6541		49.442	1.7842	1	906120			31802	1289	22055	22128	32200	32200					-0.03836870384282065
QSVSFLHGK	9	Unmodified	_QSVSFLHGK_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7734680175781	2	501.771991	1001.52943	3.5229	0.0017677	-0.66848	-0.00033542	2.8544	0.0014323	501.7717980675816	19.228	0.59955	19.228	18.802	19.402	0					57	18	5	0	0	0	0.019882	1	5163	5163		122.18	8.7644	1	1482400			31803	11570	22056	22129	32201	32201					0.028725896460514377
QSVVTALRAMK	11	Unmodified	_QSVVTALRAMK_					0	0	0		ENST00000325006.7_1_7:129066991-129067174:+|nuORF	ENST00000325006.7_1_7:129066991-129067174:+|nuORF	ENST00000325006.7_1_7:129066991-129067174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.8997497558594	3	401.900786	1202.68053	-0.12558	-5.0472E-05	-2.2572	-0.00090715	-2.3827	-0.00095762	401.9000584362792	21.596	0.15615	21.596	21.529	21.685	0					7	4	2	0	0	0	0.73562	1	6301	6301		24.232	0.70912	1	26705			31804	8637	22057	22130	32202	32202					0.08729407962346158
QSWGKQIVV	9	Unmodified	_QSWGKQIVV_					0	0	0			REV__ENST00000460297.1_1_16:448229-448523:+|nuORF	REV__ENST00000460297.1_1_16:448229-448523:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7957763671875	2	522.795466	1043.57638	1.0858	0.00056767	-1.2426	-0.00064962	-0.15674	-8.1943E-05	522.7948184647963	21.862	0.19732	21.862	21.806	22.003	0					7	4	2	0	0	0	0.22377	1	6427	6427		58.782	18.004	1	109280	+		31805	19365	22058	22131	32203	32203					0.056334491971938405
QSYSSQKQ	8	Unmodified	_QSYSSQKQ_					0	0	0			REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2284851074219	2	478.227613	954.440674	-0.060564	-2.8963E-05	2.1022	0.0010053	2.0416	0.00097637	478.2286755239753	20.555	0.28548	20.555	20.483	20.769	0					13	8	2	0	0	0	0.66095	1	5530	5530		39.253	8.7492	1	133440	+		31806	17807	22059	22132	32204	32204					-0.038368703842706964
QSYVTLRVP	9	Unmodified	_QSYVTLRVP_					0	0	0		ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8005981445312	2	531.800749	1061.58694	0.12203	6.4898E-05	-0.48091	-0.00025575	-0.35888	-0.00019085	531.8004972521758	17.891	0.14749	17.891	17.844	17.992	0					7	3	3	0	0	0	0.085655	1	5139	5139		82.75	15.257	1	725280			31807	4937	22060	22133	32205	32205					0.05861431851622001
QTAALRARV	9	Unmodified	_QTAALRARV_					0	0	0			REV__ENST00000531687.1_1_2:39997229-40006379:-|nuORF	REV__ENST00000531687.1_1_2:39997229-40006379:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.29840087890625	2	493.298707	984.582862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.938	1	12.938	12.438	13.438	0								0	0	0	0.34101	1	2556	2556		14.137	3.2716	1		+		31808	14952	22061	22134	32206	32206					0.08995387148547707
QTAAPEVNNI	10	Unmodified	_QTAAPEVNNI_					0	0	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7720336914062	2	528.769645	1055.52474	3.4606	0.0018299	3.562	0.0018835	7.0226	0.0037133	528.7714239395518	43.763	0.14429	43.763	43.727	43.871	0					6	4	2	0	0	0	0.30252	1	17530	17530		66.962	1.4965	1	56197			31809	2177	22062	22135	32207	32207					-0.0008033928738768736
QTACHVGG	8	Unmodified	_QTACHVGG_					0	0	0		sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1;sp|P16786|UL49_HCMVAUncharacterizedproteinUL49OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL49PE=3SV=1	sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.6744384765625	2	386.673963	771.333372	0.44357	0.00017152	1.0585	0.00040931	1.5021	0.00058083	386.6743730488624	27.001	0.2586	27.001	26.845	27.104	0					9	5	3	0	0	0	0.65276	1	9720	9720		40.573	10.069	1	280860			31810	22474	22063	22136	32208	32208					-0.061441187994887514
QTAGNVFLK	9	Unmodified	_QTAGNVFLK_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2742614746094	2	489.274367	976.53418	3.5016	0.0017132	-2.5524	-0.0012488	0.94921	0.00046442	489.27326784376453	29.993	0.30442	29.993	29.784	30.088	0					15	11	2	0	0	0	0.25716	1	9808	9808		54.776	8.8244	1	122110			31811	3182	22064	22137	32209	32209					0.04497473788808293
QTAGNVFLK	9	Unmodified	_QTAGNVFLK_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2744140625	2	489.274367	976.53418	-0.074869	-3.6631E-05	0.92913	0.0004546	0.85426	0.00041797	489.2749591327376	30.196	0.42341	30.196	30.008	30.432	0					27	9	4	0	0	0	0.048471	1	11271	11271		95.815	16.364	1	1042700			31812	3182	22064	22137	32210	32210					0.04497473788808293
QTAGNVFLK	9	Unmodified	_QTAGNVFLK_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.27685546875	2	489.274367	976.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.974	1	29.974	29.474	30.474	0								0	0	0	0.18645	1	10149	10149		52.937	12.159	1				31813	3182	22064	22137	32211	32211					0.04497473788808293
QTAGNVFLK	9	Unmodified	_QTAGNVFLK_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2742004394531	2	489.274367	976.53418	-0.517	-0.00025295	1.1106	0.0005434	0.59362	0.00029045	489.27498777613863	30.155	0.51062	30.155	29.947	30.458	0					22	10	3	0	0	0	0.12239	1	11139	11139		74.255	12.148	1	1666100			31814	3182	22064	22137	32212	32212					0.04497473788808293
QTAIAEAEQR	10	Unmodified	_QTAIAEAEQR_					0	0	0		ENST00000546453.1_1_12:53215658-53224087:-|nuORF;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5	ENST00000546453.1_1_12:53215658-53224087:-|nuORF	ENST00000546453.1_1_12:53215658-53224087:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7870483398438	2	558.785827	1115.5571	1.2894	0.00072048	-0.21814	-0.00012189	1.0712	0.00059859	558.7859792352758	24.651	0.11606	24.651	24.568	24.684	0					6	3	2	0	0	0	0.43008	1	7316	7316		52.937	3.4007	1	67358		+	31815	663	22065	22138	32213	32213					0.003944481156167967
QTAIHQVPLI	10	Unmodified	_QTAIHQVPLI_					0	0	0		HLF|p.S100Afs*106|1|0.55|ENSG00000108924|chr17:55267927-55267927|C/-|frameshift_variant;HLF|p.L92Cfs*114|1|0.19|ENSG00000108924|chr17:55267906-55267906|T/-|frameshift_variant	HLF|p.S100Afs*106|1|0.55|ENSG00000108924|chr17:55267927-55267927|C/-|frameshift_variant	HLF|p.S100Afs*106|1|0.55|ENSG00000108924|chr17:55267927-55267927|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.3272094726562	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.151	1	44.151	43.651	44.651	0								0	0	0	0.4201	1	17216	17216		18.262	0	1				31816	11209	22066	22139	32214	32214					0.09021693777026485
QTAIYAKAK	9	Unmodified	_QTAIYAKAK_					0	0	0			REV__ENST00000475012.5_1_3:62203523-62278979:+|nuORF	REV__ENST00000475012.5_1_3:62203523-62278979:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2894287109375	2	497.290017	992.565481	-1.1444	-0.00056911	0.98526	0.00048996	-0.15915	-7.9144E-05	497.29065105142956	21.909	0.10361	21.909	21.852	21.956	0					7	3	3	0	0	0	0.4966	1	6369	6369		32.812	0	1	85430	+		31817	15240	22067	22140	32215	32215					0.06890046822900331
QTAKESIVF	9	Unmodified	_QTAKESIVF_					0	0	0		nc|ENSG00000291014|Q9Y6N3|CLCA3P	nc|ENSG00000291014|Q9Y6N3|CLCA3P	nc|ENSG00000291014|Q9Y6N3|CLCA3P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7799377441406	2	511.779482	1021.54441	1.027	0.00052559	-0.27343	-0.00013994	0.75356	0.00038566	511.77945817923455	37.464	0.21471	37.464	37.358	37.573	0					10	6	2	0	0	0	0.26904	1	14213	14213		53.351	3.9099	1	117770			31818	11831	22068	22141	32216	32216					0.034500367233818
QTANPGTQLSI	11	Unmodified	_QTANPGTQLSI_					0	0	0		ENST00000405204.6_1_6:107349642-107349852:+|nuORF	ENST00000405204.6_1_6:107349642-107349852:+|nuORF	ENST00000405204.6_1_6:107349642-107349852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2962646484375	2	565.296027	1128.5775	1.7162	0.00097014	-1.2251	-0.00069257	0.49102	0.00027757	565.2950530309242	26.844	0.31507	26.844	26.788	27.103	0					23	6	5	0	0	0	0.035657	1	9546	9546		112.11	13.478	1	4777500			31819	9274	22069	22142	32217	32217					0.018356187754534403
QTAQFSPGK	9	Unmodified	_QTAQFSPGK_					0	0	0			REV__nc|ENSG00000168546|O00451-2|GFRA2	REV__nc|ENSG00000168546|O00451-2|GFRA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7510681152344	2	482.248349	962.482145	0.046985	2.2658E-05	2.9047	0.0014008	2.9517	0.0014235	482.24997772985216	22.481	0.28659	22.481	22.318	22.605	0					11	8	2	0	0	0	0.19952	1	6357	6357		61.691	1.7605	1	177150	+		31820	16267	22070	22143	32218	32218					-0.000596896249362544
QTAQIFFTK	9	Unmodified	_QTAQIFFTK_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.7977905273438	2	542.295299	1082.57605	1.7908	0.00097115	-0.17469	-9.4736E-05	1.6161	0.00087642	542.2950703061242	36.4	0.16991	36.4	36.342	36.512	0					14	8	2	0	0	0	0.34452	1	11937	11937		46.457	4.0606	1	85403			31821	6027	22071	22144	32219	32219					0.03806029477323136
QTAQIFFTK	9	Unmodified	_QTAQIFFTK_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.295654296875	2	542.295299	1082.57605	1.2304	0.00066726	-0.55435	-0.00030062	0.67609	0.00036664	542.2950440931534	36.655	0.34328	36.655	36.572	36.915	0					23	10	4	0	0	0	0.21419	1	14282	14282		59.931	12.273	1	572180			31822	6027	22071	22144	32220	32220					0.03806029477323136
QTAQIFFTK	9	Unmodified	_QTAQIFFTK_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.29638671875	2	542.295299	1082.57605	2.0937	0.0011354	-0.89349	-0.00048454	1.2002	0.00065085	542.2947967343205	36.453	0.17655	36.453	36.352	36.529	0					17	8	3	0	0	0	0.18416	1	13037	13037		63.534	15.618	1	173600			31823	6027	22071	22144	32221	32221					0.03806029477323136
QTAQIFFTK	9	Unmodified	_QTAQIFFTK_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2955932617188	2	542.295299	1082.57605	0.62768	0.00034039	0.012802	6.9424E-06	0.64048	0.00034733	542.295145499692	36.604	0.51482	36.604	36.479	36.994	0					18	10	3	0	0	0	0.14578	1	14243	14243		68.846	7.8742	1	976420			31824	6027	22071	22144	32222	32222					0.03806029477323136
QTAQPPLKAG	10	Unmodified	_QTAQPPLKAG_					0	0	0		ENST00000399775.2_1_9:34521738-34522817:-|nuORF	ENST00000399775.2_1_9:34521738-34522817:-|nuORF	ENST00000399775.2_1_9:34521738-34522817:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.79278564453125	2	505.785099	1009.55564	-0.04228	-2.1385E-05	3.9361	0.0019908	3.8938	0.0019694	505.7853872565788	19.229	0.663	19.229	18.953	19.616	0					23	12	4	0	0	0	0.49411	1	5786	5786		45.972	3.108	1	1891600			31825	9241	22072	22145	32223	32223					0.05124858817521272
QTASREVLQ	9	Unmodified	_QTASREVLQ_					0	0	0			REV__ENST00000530991.5_1_11:8740316-8740412:-|nuORF	REV__ENST00000530991.5_1_11:8740316-8740412:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2775268554688	2	516.277638	1030.54072	0.036792	1.8995E-05	-1.0666	-0.00055067	-1.0298	-0.00053167	516.2772013458425	18.861	0.78327	18.861	18.833	19.616	0					48	19	4	0	0	0	0.035062	1	5600	5600		104.06	2.4561	1	5954000	+		31826	20055	22073	22146	32224	32224					0.02667366949526695
QTDFHTEK	8	Unmodified	_QTDFHTEK_					0	0	0			REV__DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	REV__DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.23529052734375	2	503.235439	1004.45632	-0.49775	-0.00025048	0.12993	6.5388E-05	-0.36781	-0.0001851	503.23552967289794	15.856	0.31279	15.856	15.6	15.913	0					11	6	3	0	0	0	0.50061	1	4430	4430		60.118	13.661	1	536770	+		31827	12703	22074	22147	32225	32225					-0.04572583867229696
QTDPAKKKK	9	Unmodified	_QTDPAKKKK_					0	0	0			REV__ENSG00000147679|ENST00000309822|UTP23	REV__ENSG00000147679|ENST00000309822|UTP23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.3145751953125	2	522.314023	1042.61349	-1.3078	-0.00068306	1.6264	0.00084948	0.31862	0.00016642	522.315118656388	12.204	0.074183	12.204	12.148	12.222	0					7	4	2	0	0	0	0.41958	1	2358	2358		40.778	2.9666	1	46248	+		31828	15361	22075	22148	32226	32226					0.0938912074293512
QTDRPGILPG	10	Unmodified	_QTDRPGILPG_					0	0	0		ENST00000416681.5_1_7:48128326-48128464:+|nuORF	ENST00000416681.5_1_7:48128326-48128464:+|nuORF	ENST00000416681.5_1_7:48128326-48128464:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2885131835938	2	527.288005	1052.56146	1.6284	0.00085861	-0.33051	-0.00017427	1.2978	0.00068434	527.2876408629683	14.802	0.16541	14.802	14.745	14.911	0					7	3	3	0	0	0	0.41335	1	3779	3779		54.776	3.2486	1	232280			31829	9364	22076	22149	32227	32227					0.03727957329192577
QTEGLGIP	8	Unmodified	_QTEGLGIP_					0	0	0		ENST00000519948.3_1_12:74931642-74931807:+|nuORF	ENST00000519948.3_1_12:74931642-74931807:+|nuORF	ENST00000519948.3_1_12:74931642-74931807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7187805175781	2	407.718893	813.423233	-0.57021	-0.00023249	0.33762	0.00013765	-0.23259	-9.4831E-05	407.7190176295397	15.198	0.22649	15.198	15.101	15.328	0					12	5	3	0	0	0	0.39542	1	3878	3878		71.378	10.406	1	1754900			31830	10293	22077	22150	32228	32228					0.009058340807087006
QTEKDPWY	8	Unmodified	_QTEKDPWY_					0	0	0			REV__SLCO1C1|p.G707D|1|0.35|ENSG00000139155|chr12:20752509-20752509|G/A|missense_variant	REV__SLCO1C1|p.G707D|1|0.35|ENSG00000139155|chr12:20752509-20752509|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7465209960938	2	533.745639	1065.47673	1.1204	0.00059803	-0.074279	-3.9646E-05	1.0462	0.00055839	533.7456344924424	32.73	0.58511	32.73	32.277	32.862	0					30	17	2	0	0	0	0.7126	1	11284	11284		31.955	0	1	143170	+		31831	21540	22078	22151	32229	32229					-0.05339413207434518
QTEKMQMGK	9	Oxidation (M)	_QTEKMQM(Oxidation (M))GK_		QTEKM(0.092)QM(0.908)GK		QTEKM(-10)QM(10)GK	0	0	1			REV__ENST00000600534.1_1_19:59085324-59085477:+|nuORF	REV__ENST00000600534.1_1_19:59085324-59085477:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7603149414062	2	548.759909	1095.50526	1.8443	0.0010121	-1.5663	-0.00085951	0.27803	0.00015257	548.7592250417711	20.808	0.2491	20.808	20.655	20.904	0					11	5	3	0	0	0	0.18605	1	6530	6530		63.306	6.8725	2	716270	+		31832	20596	22079	22152	32230	32230		737			-0.038667548941475616
QTELGRAHAR	10	Unmodified	_QTELGRAHAR_					0	0	0		ENST00000261692.6_1_12:123751765-123756364:-|nuORF	ENST00000261692.6_1_12:123751765-123756364:-|nuORF	ENST00000261692.6_1_12:123751765-123756364:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.8090209960938	2	569.807428	1137.6003	1.7538	0.00099935	0.91385	0.00052072	2.6677	0.0015201	569.8080060687729	22.08	0.14269	22.08	21.99	22.132	0					7	3	3	0	0	0	0.67098	1	7132	7132		25.574	25.574	1	445120			31833	8299	22080	22153	32231	32231					0.03700682683552259
QTERDKELE	9	Unmodified	_QTERDKELE_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.2854614257812	2	574.283117	1146.55168	1.9472	0.0011182	2.0084	0.0011534	3.9556	0.0022716	574.2842607754015	24.653	0.2654	24.653	24.545	24.811	0					10	5	3	0	0	0	0.12239	1	8667	8667		74.255	6.7614	1	579670	+		31834	14454	22081	22154	32232	32232					-0.015732754668533744
QTFLLQTTK	9	Unmodified	_QTFLLQTTK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.3089599609375	2	540.308406	1078.60226	1.9319	0.0010438	-0.94149	-0.00050869	0.99042	0.00053513	540.3077651217849	34.694	0.32577	34.694	34.533	34.859	0					29	8	5	0	0	0	0.14578	1	12920	12920		68.846	1.3525	1	2204400			31835	4886	22082	22155	32233	32233					0.06610298648797652
QTFLLQTTK	9	Unmodified	_QTFLLQTTK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.3096313476562	2	540.308406	1078.60226	-0.017606	-9.5126E-06	0.17926	9.6856E-05	0.16165	8.7343E-05	540.3086350484257	34.452	0.30205	34.452	34.359	34.661	0					29	13	3	0	0	0	0.12278	1	11613	11613		74.165	22.972	1	477230			31836	4886	22082	22155	32234	32234					0.06610298648797652
QTFLLQTTK	9	Unmodified	_QTFLLQTTK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.3087158203125	2	540.308406	1078.60226	1.9791	0.0010693	-2.2966	-0.0012409	-0.31757	-0.00017159	540.3069648931538	34.653	0.58096	34.653	34.53	35.111	0					33	16	3	0	0	0	0.021015	1	13367	13367		120.31	21.677	1	2370100			31837	4886	22082	22155	32235	32235					0.06610298648797652
QTFLLQTTK	9	Unmodified	_QTFLLQTTK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.3088989257812	2	540.308406	1078.60226	2.0936	0.0011312	-2.2655	-0.0012241	-0.17198	-9.2922E-05	540.3073284246353	34.627	0.79338	34.627	34.037	34.83	0					26	16	3	0	0	0	0.12278	1	13280	13280		74.165	12.058	1	3051600			31838	4886	22082	22155	32236	32236					0.06610298648797652
QTFNLNPNL	9	Unmodified	_QTFNLNPNL_					0	0	0		nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000172888|ENST00000339296|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	354.18572998046875	3	354.185579	1059.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.765	1	22.765	22.265	23.265	0								0	0	0	0.34845	1	6749	6749		25.574	0	1				31839	6390	22083	22156	32237	32237					0.007522684378500344
QTFQRIFTK	9	Unmodified	_QTFQRIFTK_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.2205810546875	3	390.220624	1167.64004	0.14604	5.6987E-05	-0.022722	-8.8666E-06	0.12332	4.812E-05	390.2205450290821	29.725	0.26569	29.725	29.667	29.933	0					9	5	3	0	0	0	0.55048	1	11049	11049		27.047	1.4733	1	254300			31840	2107	22084	22157	32238	32238					0.06292809634260266
QTGLVRRSR	9	Unmodified	_QTGLVRRSR_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.818603515625	2	536.820338	1071.62612	1.8553	0.00099598	-3.6398	-0.0019539	-1.7845	-0.00095793	536.817727394858	15.526	0.31951	15.526	15.417	15.736	0					9	6	2	0	0	0	0.36892	1	4276	4276		29.15	1.2673	1	1448800			31841	7116	22085	22158	32239	32239					0.09317576925832327
QTGSQSWCR	9	Unmodified	_QTGSQSWCR_					0	0	0			REV__ENST00000496314.1_1_13:45009145-45009418:-|nuORF	REV__ENST00000496314.1_1_13:45009145-45009418:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.656494140625	2	526.73254	1051.45053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.475	1	11.475	10.975	11.975	0								0	0	0	0.3428	1	2357	2357		26.693	2.4902	1		+		31842	19771	22086	22159	32240	32240					-0.07314005650550826
QTGVYTEHVFT	11	Unmodified	_QTGVYTEHVFT_					0	0	0		ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	641.3068237304688	2	641.309135	1280.60372	-2.2872	-0.0014668	-2.2423	-0.001438	-4.5295	-0.0029048	641.3080554140641	26.872	0.30611	26.872	26.67	26.976	0					15	7	3	0	0	0	0.79221	1	8675	8675		16.717	2.5803	1	125250			31843	1016	22087	22160	32241	32241					-0.02536112053121542
QTHADAFAVQ	10	Unmodified	_QTHADAFAVQ_					0	0	0			REV__ENSG00000170382|ENST00000367177|LRRN2	REV__ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2645874023438	2	544.261988	1086.50942	3.671	0.001998	1.5832	0.00086168	5.2542	0.0028597	544.2627268659013	11.906	0.33836	11.906	11.797	12.135	0					13	9	2	0	0	0	0.72769	1	2405	2405		17.468	0.75062	1	1521000	+		31844	16363	22088	22161	32242	32242					-0.03037206084582067
QTIDELKK	8	Unmodified	_QTIDELKK_					0	0	0			REV__tr|U7SNU9|U7SNU9_FUSNUAdenylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=adkPE=3SV=1	REV__tr|U7SNU9|U7SNU9_FUSNUAdenylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=adkPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7797546386719	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.835	1	18.835	18.335	19.335	0								0	0	0	1.7419	1	5851	5851		72.879	8.672	1		+		31845	21818	22089	22162	32243	32243					0.056580367233777906
QTIKYLQP	8	Unmodified	_QTIKYLQP_					0	0	0			REV__ENST00000281620.10_1_13:26279420-26594120:+|nuORF	REV__ENST00000281620.10_1_13:26279420-26594120:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.782958984375	2	495.784567	989.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.471	1	13.471	12.971	13.971	0								0	0	0	1.7419	1	3134	3134		24.203	0	1		+		31846	14685	22090	22163	32244	32244					0.059386444485994616
QTILQALRL	9	Unmodified	_QTILQALRL_					0	0	0			REV__ENST00000482171.5_1_2:130910130-130912221:-|nuORF	REV__ENST00000482171.5_1_2:130910130-130912221:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3324584960938	2	528.332216	1054.64988	1.6289	0.00086059	-1.352	-0.00071429	0.27691	0.0001463	528.3316023420584	18.313	0.26523	18.313	18.206	18.471	0					7	5	2	0	0	0	0.27249	1	5469	5469		29.15	0	1	2253600	+		31847	14875	22091	22164	32245	32245					0.12473997639631307
QTKLNVKR	8	Unmodified	_QTKLNVKR_					0	0	0			REV__TPO|p.I241Tfs*18|1|0.13|ENSG00000115705|chr2:1456184-1456185|-/C|frameshift_variant	REV__TPO|p.I241Tfs*18|1|0.13|ENSG00000115705|chr2:1456184-1456185|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.8086242675781	2	493.808908	985.603263	0.76744	0.00037897	0.19527	9.6426E-05	0.96271	0.0004754	493.8088306668572	15.512	0.13399	15.512	15.45	15.584	0					6	3	2	0	0	0	0.60719	1	4045	4045		47.916	0.25827	1	302600	+		31848	14121	22092	22165	32246	32246					0.10988557808377664
QTKLNVKR	8	Unmodified	_QTKLNVKR_					0	0	0			REV__TPO|p.I241Tfs*18|1|0.13|ENSG00000115705|chr2:1456184-1456185|-/C|frameshift_variant	REV__TPO|p.I241Tfs*18|1|0.13|ENSG00000115705|chr2:1456184-1456185|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.8089599609375	2	493.808908	985.603263	-0.62318	-0.00030773	0.7815	0.00038591	0.15832	7.8179E-05	493.8092727694551	15.468	0.14892	15.468	15.364	15.513	0					6	3	2	0	0	0	0.46905	1	4089	4089		63.306	1.1989	1	704970	+		31849	14121	22092	22165	32247	32247					0.10988557808377664
QTKREVLK	8	Unmodified	_QTKREVLK_					0	0	0		APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.54168701171875	3	334.541586	1000.60293	3.6766	0.00123	-3.576	-0.0011963	0.10064	3.3668E-05	334.54055920033466	16.83	0.085854	16.83	16.777	16.863	0					6	3	2	0	0	0	0.78142	1	4117	4117		23.042	2.0956	1	45578			31850	182	22093	22166	32248	32248					0.10265138088504955
QTKTVYIR	8	Unmodified	_QTKTVYIR_					0	0	0			REV__ENSG00000182050|ENST00000611864|MGAT4C	REV__ENSG00000182050|ENST00000611864|MGAT4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7970886230469	2	504.795466	1007.57638	-0.06678	-3.371E-05	-2.3308	-0.0011766	-2.3976	-0.0012103	504.7943460838352	27.923	0.3445	27.923	27.774	28.119	0					25	12	3	0	0	0	0.6088	1	8727	8727		47.657	5.2612	1	251930	+		31851	16862	22094	22167	32249	32249					0.07289449197173781
QTKVRYVL	8	Unmodified	_QTKVRYVL_					0	0	0			REV__nc|ENSG00000262980|Q8NGH6|OR52L2P	REV__nc|ENSG00000262980|Q8NGH6|OR52L2P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.80523681640625	2	503.805834	1005.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.279	1	23.279	22.779	23.779	0								0	0	0	1.7419	1	6713	6713		57.811	11.859	1		+		31852	21242	22095	22168	32250	32250					0.09454039576849027
QTKVWFNI	8	Unmodified	_QTKVWFNI_					0	0	0			REV__SERPINB2|p.S171F|1|0.39|ENSG00000197632|chr18:63897821-63897821|C/T|missense_variant	REV__SERPINB2|p.S171F|1|0.39|ENSG00000197632|chr18:63897821-63897821|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2861328125	2	518.284734	1034.55492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.628	1	37.628	37.128	38.128	0								0	0	0	1.7419	1	14279	14279		24.203	0	1		+		31853	21504	22096	22169	32251	32251					0.03902064168460129
QTLDKVVRK	9	Unmodified	_QTLDKVVRK_					0	0	0		PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB;PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant;PHKB|p.N422Ifs*52|1|0.46|ENSG00000102893|chr16:47596427-47596427|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8359375	2	543.835123	1085.65569	1.1611	0.00063145	0.20846	0.00011337	1.3696	0.00074482	543.8352390688632	17.953	0.16883	17.953	17.868	18.037	0					9	4	3	0	0	0	0.61124	1	4393	4393		19.104	4.9664	1	216450			31854	2197	22097	22170	32252	32252					0.11629096151318663
QTLDKVVRK	9	Unmodified	_QTLDKVVRK_					0	0	0		PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB;PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant;PHKB|p.N422Ifs*52|1|0.46|ENSG00000102893|chr16:47596427-47596427|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8924560546875	3	362.892507	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.283	1	18.283	17.783	18.783	0								0	0	0	0.15451	1	5319	5319		85.161	45.103	1				31855	2197	22097	22170	32253	32253					0.11629096151318663
QTLDKVVRK	9	Unmodified	_QTLDKVVRK_					0	0	0		PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB;PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant;PHKB|p.N422Ifs*52|1|0.46|ENSG00000102893|chr16:47596427-47596427|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.892578125	3	362.892507	1085.65569	-0.074388	-2.6995E-05	0.49124	0.00017827	0.41686	0.00015127	362.89266925846846	18.182	0.11349	18.182	18.125	18.239	0					4	2	2	0	0	0	0.24095	1	5403	5403		72.879	30.015	1	1429200			31856	2197	22097	22170	32254	32254					0.11629096151318663
QTLKLTQKA	9	Unmodified	_QTLKLTQKA_					0	0	0			REV__ENST00000343882.10_1_6:108986065-109001113:+|nuORF	REV__ENST00000343882.10_1_6:108986065-109001113:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.8165283203125	2	515.816399	1029.61824	-0.084397	-4.3534E-05	0.6994	0.00036076	0.615	0.00031723	515.8166661723075	18.59	0.099377	18.59	18.559	18.658	0					5	3	2	0	0	0	0.078509	1	4893	4893		85.161	0	1	483740	+		31857	18470	22098	22171	32255	32255					0.10462004885698661
QTLKNTVR	8	Unmodified	_QTLKNTVR_					0	0	0		ENST00000397988.7_1_18:61645690-61649045:+|nuORF	ENST00000397988.7_1_18:61645690-61649045:+|nuORF	ENST00000397988.7_1_18:61645690-61649045:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.28497314453125	2	480.285266	958.555979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.112	1	13.112	12.612	13.612	0								0	0	0	1.7419	1	2962	2962		79.451	5.196	1				31858	9225	22099	22172	32256	32256					0.0750427853738529
QTLLHVSK	8	Unmodified	_QTLLHVSK_					0	0	0		ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant	ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant	ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.2769775390625	2	463.276909	924.539266	0.10538	4.8822E-05	-0.35866	-0.00016616	-0.25328	-0.00011734	463.2766603814257	20.811	0.1263	20.811	20.731	20.857	0					8	5	2	0	0	0	0.66095	1	5637	5637		39.253	0.44669	1	38594			31859	197	22100	22173	32257	32257					0.07397777651419801
QTLLHVSK	8	Unmodified	_QTLLHVSK_					0	0	0		ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant	ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant	ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.276611328125	2	463.276909	924.539266	0.64316	0.00029796	-1.18	-0.00054667	-0.53685	-0.00024871	463.27629530762584	21.138	0.094578	21.138	21.093	21.187	0					6	2	3	0	0	0	0.41	1	6682	6682		69.628	2.134	1	455610			31860	197	22100	22173	32258	32258					0.07397777651419801
QTLLWCDQLAA	11	Unmodified	_QTLLWCDQLAA_					0	0	0			REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF	REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	631.3177490234375	2	631.315906	1260.61726	3.1095	0.0019631	-0.18422	-0.0001163	2.9253	0.0018468	631.3158446484985	25.539	0.3208	25.539	25.381	25.701	0					24	6	5	0	0	0	0.24536	1	8947	8947		68.846	20.887	1	2372300	+		31861	20094	22101	22174	32259	32259					-0.002625775455044277
QTLPGVDIQQ	10	Unmodified	_QTLPGVDIQQ_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7943115234375	2	549.793121	1097.57169	-0.32139	-0.0001767	0.999	0.00054924	0.67761	0.00037254	549.7937075848622	17.244	0.11829	17.244	17.16	17.278	0					5	3	2	0	0	0	0.3337	1	4276	4276		63.534	1.4264	1	168250			31862	1015	22102	22175	32260	32260					0.02680520263766084
QTLPNAAYNNR	11	Unmodified	_QTLPNAAYNNR_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.318359375	2	631.317825	1260.6211	0.19624	0.00012389	-0.025551	-1.6131E-05	0.17069	0.00010776	631.3179522430355	25.359	0.27026	25.359	25.254	25.524	0					25	10	3	0	0	0	0.21174	1	7602	7602		72.879	36.432	1	301800			31863	2191	22103	22176	32261	32261					0.001212282725418845
QTLPNAAYNNR	11	Unmodified	_QTLPNAAYNNR_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.3175659179688	2	631.317825	1260.6211	-0.73086	-0.00046141	0.80658	0.00050921	0.075719	4.7803E-05	631.3185733033492	25.374	0.3149	25.374	25.253	25.568	0					25	11	4	0	0	0	0.041092	1	7878	7878		109.48	26.728	1	269270			31864	2191	22103	22176	32262	32262					0.001212282725418845
QTLPNAAYNNR	11	Unmodified	_QTLPNAAYNNR_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.3189697265625	2	631.317825	1260.6211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.381	1	25.381	24.881	25.881	0								0	0	0	0.40299	1	7889	7889		36.447	13.867	1				31865	2191	22103	22176	32263	32263					0.001212282725418845
QTLPNAAYNNR	11	Unmodified	_QTLPNAAYNNR_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	631.3179321289062	2	631.317825	1260.6211	1.5073	0.00095156	-1.5376	-0.00097073	-0.030366	-1.9171E-05	631.3170457458405	25.594	0.49239	25.594	25.392	25.885	0					22	8	4	0	0	0	5.2492E-05	1	9115	9115		160.82	100.7	1	1857000			31866	2191	22103	22176	32264	32264					0.001212282725418845
QTLPNAAYNNR	11	Unmodified	_QTLPNAAYNNR_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	631.31787109375	2	631.317825	1260.6211	-0.15793	-9.9704E-05	0.33476	0.00021134	0.17683	0.00011164	631.3180533468872	25.578	0.21841	25.578	25.519	25.738	0					10	4	3	0	0	0	0.22894	1	9107	9107		70.816	27.952	1	245860			31867	2191	22103	22176	32265	32265					0.001212282725418845
QTLPNAAYNNR	11	Unmodified	_QTLPNAAYNNR_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	631.31787109375	2	631.317825	1260.6211	-2.1846	-0.0013792	2.2335	0.00141	0.048844	3.0836E-05	631.3194912932403	25.462	0.31497	25.462	25.327	25.642	0					19	8	3	0	0	0	0.035657	1	8089	8089		112.11	53.877	1	340070			31868	2191	22103	22176	32266	32266					0.001212282725418845
QTLQPQSRR	9	Unmodified	_QTLQPQSRR_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.3113403320312	2	557.309803	1112.60505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.83	1	37.83	37.33	38.33	0								0	0	0	0.30504	1	12363	12363		34.173	0	1		+		31869	16139	22104	22177	32267	32267					0.05325566826309114
QTLQTQAVL	9	Unmodified	_QTLQTQAVL_					0	0	0			REV__ENST00000465124.1_1_9:127634910-127635171:+|nuORF	REV__ENST00000465124.1_1_9:127634910-127635171:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2848205566406	2	501.284931	1000.55531	-0.59051	-0.00029602	1.3983	0.00070096	0.80781	0.00040495	501.2857608584642	14.769	0.21659	14.769	14.711	14.928	0					9	4	3	0	0	0	0.16002	1	3760	3760		66.429	0.96389	1	492740	+		31870	19409	22105	22178	32268	32268					0.05505439097669296
QTLSGAGLLK	10	Unmodified	_QTLSGAGLLK_					0	0	0		ENST00000560260.5_1_15:64422114-64427054:+|nuORF;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2958068847656	2	494.295299	986.576045	0.52208	0.00025806	0.17771	8.7839E-05	0.69978	0.0003459	494.29529570332056	33.027	0.16341	33.027	32.915	33.079	0					8	4	3	0	0	0	0.12383	1	12175	12175		91.265	3.5688	1	89507			31871	1139	22106	22179	32269	32269					0.08222029477349224
QTLSGQLVLA	10	Unmodified	_QTLSGQLVLA_					0	0	0			REV__UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant	REV__UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8012084960938	2	515.300581	1028.58661	-1.5496	-0.00079852	0.47917	0.00024692	-1.0704	-0.0005516	515.3014335534756	36.256	0.33634	36.256	36.126	36.463	0					38	13	4	0	0	0	0.28036	1	12982	12982		69.628	16.691	1	337750	+		31872	14605	22107	22180	32270	32270					0.07346012131756652
QTLSTQLWK	9	Unmodified	_QTLSTQLWK_					0	0	0		ENSG00000112305|ENST00000370455|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.8070678710938	2	552.806031	1103.59751	1.8228	0.0010076	-1.4628	-0.00080866	0.35996	0.00019899	552.805028875891	37.303	0.31731	37.303	37.219	37.536	0					16	9	3	0	0	0	0.13109	1	14126	14126		65.465	22.601	1	248370			31873	2734	22108	22181	32271	32271					0.04985414506040797
QTLSTQLWK	9	Unmodified	_QTLSTQLWK_					0	0	0		ENSG00000112305|ENST00000370455|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	ENSG00000112305|ENST00000370455|SMAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8068237304688	2	552.806031	1103.59751	0.82873	0.00045813	-3.3259	-0.0018386	-2.4972	-0.0013805	552.804813056243	37.247	0.36471	37.247	37.12	37.484	0					15	7	3	0	0	0	0.18505	1	14523	14523		56.434	13.57	1	115970			31874	2734	22108	22181	32272	32272					0.04985414506040797
QTLVLQSL	8	Unmodified	_QTLVLQSL_					0	0	0			REV__nc|ENSG00000211637|A0A075B6H9|IGLV4-69	REV__nc|ENSG00000211637|A0A075B6H9|IGLV4-69	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.271728515625	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.953	1	36.953	36.453	37.453	0								0	0	0	1.7419	1	12109	12109		60.118	5.3419	1		+		31875	21199	22109	22182	32273	32273					0.07378955557294375
QTLYLRKA	8	Unmodified	_QTLYLRKA_					0	0	0		ENST00000222120.7_1_19:11435272-11435518:-|nuORF	ENST00000222120.7_1_19:11435272-11435518:-|nuORF	ENST00000222120.7_1_19:11435272-11435518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7988586425781	2	496.798009	991.581465	-0.062417	-3.1009E-05	1.1717	0.00058212	1.1093	0.00055111	496.79844186733754	29.082	0.17847	29.082	28.981	29.159	0					9	5	2	0	0	0	0.66372	1	9740	9740		38.806	0	1	60255			31876	8178	22110	22183	32274	32274					0.08533753059805349
QTMAANAQKNK	11	Unmodified	_QTMAANAQKNK_					0	0	0		ENST00000371870.3_1_1:47799617-47838812:+|nuORF;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1;nc|ENSG00000162368|P30085-2|CMPK1	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.8088989257812	2	602.808779	1203.60301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.867	1	13.867	13.367	14.367	0								0	0	0	0.036631	1	3253	3253		98.582	38.464	1				31877	5455	22111	22184	32275	32275					0.00934770026174192
QTMAANAQKNK	11	Unmodified	_QTMAANAQKNK_					0	0	0		ENST00000371870.3_1_1:47799617-47838812:+|nuORF;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1;nc|ENSG00000162368|P30085-2|CMPK1	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.8099365234375	2	602.808779	1203.60301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.61	1	13.61	13.11	14.11	0								0	0	0	0.38672	1	2826	2826		40.058	7.2458	1				31878	5455	22111	22184	32276	32276					0.00934770026174192
QTMAANAQKNK	11	Unmodified	_QTMAANAQKNK_					0	0	0		ENST00000371870.3_1_1:47799617-47838812:+|nuORF;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1;nc|ENSG00000162368|P30085-2|CMPK1	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.8087768554688	2	602.808779	1203.60301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.837	1	13.837	13.337	14.337	0								0	0	0	1.937E-05	1	3459	3459		145.16	38.148	1				31879	5455	22111	22184	32277	32277					0.00934770026174192
QTMDMIISK	9	Unmodified	_QTMDMIISK_					0	0	0		ENST00000478307.5_1_1:147400580-147440603:+|nuORF;nc|ENSG00000188092|B7ZAQ6-2|GPR89A;ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.76904296875	2	533.767203	1065.51985	2.4817	0.0013246	-0.98637	-0.00052649	1.4953	0.00079814	533.7671579038574	34.19	0.13528	34.19	34.123	34.259	0					9	5	2	0	0	0	0.43488	1	11171	11171		38.754	10.871	1	49532			31880	3028	22112	22185	32278	32278					-0.010286827460276982
QTMDMIISK	9	Unmodified	_QTMDMIISK_					0	0	0		ENST00000478307.5_1_1:147400580-147440603:+|nuORF;nc|ENSG00000188092|B7ZAQ6-2|GPR89A;ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7681884765625	2	533.767203	1065.51985	1.9437	0.0010375	0.25299	0.00013504	2.1967	0.0011725	533.7674345428957	34.434	0.1762	34.434	34.345	34.521	0					8	4	2	0	0	0	0.25761	1	12817	12817		54.722	7.065	1	399340			31881	3028	22112	22185	32279	32279					-0.010286827460276982
QTMDMIISKK	10	Unmodified	_QTMDMIISKK_					0	0	0		ENST00000478307.5_1_1:147400580-147440603:+|nuORF;nc|ENSG00000188092|B7ZAQ6-2|GPR89A;ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.8157958984375	2	597.814684	1193.61482	0.15484	9.2565E-05	0.2087	0.00012477	0.36354	0.00021733	597.8148822923193	28.351	0.15763	28.351	28.207	28.365	0					7	3	3	0	0	0	0.13663	1	10370	10370		89.029	17.151	1	142290			31882	3028	22113	22186	32280	32280					0.025752507251581847
QTMESVNLMK	10	Unmodified	_QTMESVNLMK_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.7885131835938	2	590.788666	1179.56278	1.3345	0.00078843	-0.92403	-0.00054591	0.41051	0.00024252	590.7880013897624	33.157	0.18113	33.157	33.065	33.246	0					7	4	2	0	0	0	0.28675	1	12679	12679		68.846	21.189	1	149000			31883	5241	22114	22187	32281	32281					-0.019819126885977312
QTMESVNLMK	10	Unmodified	_QTMESVNLMK_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.7884521484375	2	590.788666	1179.56278	0.089776	5.3039E-05	0.5046	0.00029811	0.59437	0.00035115	590.7887898913742	33.159	0.2066	33.159	33.059	33.266	0					7	4	2	0	0	0	0.28675	1	12565	12565		68.846	17.653	1	336130			31884	5241	22114	22187	32282	32282					-0.019819126885977312
QTMIRYVPG	9	Unmodified	_QTMIRYVPG_					0	0	0			REV__nc|ENSG00000062524|P29376-5|LTK;REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7800903320312	2	532.781502	1063.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.525	1	13.525	13.025	14.025	0								0	0	0	0.15865	1	3096	3096		57.811	1.3775	1		+		31885	16397;13091	22115	22188	32283	32283					0.01921802945435047
QTMSDTTFK	9	Unmodified	_QTMSDTTFK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.74609375	2	529.744782	1057.47501	1.1508	0.00060961	1.0604	0.00056174	2.2111	0.0011713	529.7452689664448	24.96	0.20362	24.96	24.858	25.062	0					12	6	3	0	0	0	0.36135	1	7437	7437		45.022	14.519	1	230580			31886	7635	22116	22189	32284	32284					-0.05142790287709431
QTMSDTTFK	9	Unmodified	_QTMSDTTFK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7466430664062	2	529.744782	1057.47501	5.1875	0.0027481	-2.988	-0.0015829	2.1995	0.0011652	529.7432675126034	24.989	0.20207	24.989	24.881	25.083	0					12	6	3	0	0	0	0.41958	1	7707	7707		40.058	4.8575	1	128440			31887	7635	22116	22189	32285	32285					-0.05142790287709431
QTMSDTTFK	9	Unmodified	_QTMSDTTFK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7454833984375	2	529.744782	1057.47501	0.90694	0.00048044	-0.31204	-0.0001653	0.59489	0.00031514	529.7447946247669	25.214	0.36952	25.214	25.056	25.426	0					16	7	4	0	0	0	0.061298	1	8910	8910		91.265	28.287	1	1391500			31888	7635	22116	22189	32286	32286					-0.05142790287709431
QTMSDTTFK	9	Unmodified	_QTMSDTTFK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.746337890625	2	529.744782	1057.47501	1.8523	0.00098124	0.38442	0.00020365	2.2367	0.0011849	529.7449867404252	25.064	0.14508	25.064	24.969	25.114	0					8	3	3	0	0	0	0.19952	1	7904	7904		61.691	22.438	1	299010			31889	7635	22116	22189	32287	32287					-0.05142790287709431
QTMSDTTFK	9	Unmodified	_QTMSDTTFK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7449951171875	2	529.744782	1057.47501	1.2195	0.000646	-1.0559	-0.00055935	0.16357	8.6652E-05	529.7441123783808	25.047	0.18941	25.047	24.953	25.142	0					6	4	2	0	0	0	0.3269	1	7915	7915		47.96	12.341	1	134630			31890	7635	22116	22189	32288	32288					-0.05142790287709431
QTMSDTTFK	9	Unmodified	_QTMSDTTFK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7452392578125	2	529.744782	1057.47501	0.73105	0.00038727	-0.35911	-0.00019024	0.37194	0.00019704	529.7446999727049	25.17	0.31956	25.17	25.012	25.331	0					16	6	4	0	0	0	0.076532	1	8765	8765		85.862	25.744	1	2060100			31891	7635	22116	22189	32289	32289					-0.05142790287709431
QTNATQEVV	9	Unmodified	_QTNATQEVV_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000486847.2_1_19:12774617-12777525:-|nuORF;ENST00000600281.1_1_19:12776145-12777515:-|nuORF;ENST00000466794.5_1_19:12769146-12777470:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2471618652344	2	495.248546	988.482539	-0.064153	-3.1771E-05	-3.3158	-0.0016422	-3.38	-0.0016739	495.2464412019512	40.209	0.22279	40.209	40.152	40.375	0					18	13	2	0	0	0	0.55048	1	13017	13017		14.137	0	1	95165			31892	2306	22117	22190	32290	32290					-0.012163146957618665
QTNILIDMKE	10	Unmodified	_QTNILIDMKE_					0	0	0			REV__TEX35|p.K110N|1|0.39|ENSG00000240021|chr1:178520425-178520425|G/T|missense_variant	REV__TEX35|p.K110N|1|0.39|ENSG00000240021|chr1:178520425-178520425|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.8162841796875	2	602.815738	1203.61692	-0.58984	-0.00035556	0.7735	0.00046628	0.18366	0.00011071	603.317558265177	17.528	0.13719	17.528	17.441	17.578	0					9	4	3	0	0	0	0.39647	1	4403	4403		36.447	0	1	119130	+		31893	17677	22118	22191	32291	32291					0.023260027346623247
QTNPTYLAK	9	Unmodified	_QTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2774047851562	2	518.277106	1034.53966	1.3984	0.00072477	-0.61318	-0.0003178	0.78525	0.00040698	518.2767010958694	23.32	0.23341	23.32	23.183	23.416	0					13	6	3	0	0	0	0.28897	1	6717	6717		51.193	13.381	1	160950			31894	4398	22119	22192	32292	32292					0.023771525806068894
QTNPTYLAK	9	Unmodified	_QTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2772216796875	2	518.277106	1034.53966	1.3364	0.00069265	-0.78529	-0.000407	0.55115	0.00028565	518.2766269616953	23.653	0.44554	23.653	23.486	23.932	0					22	10	3	0	0	0	0.02953	1	7850	7850		109.48	44.013	1	1836400			31895	4398	22119	22192	32293	32293					0.023771525806068894
QTNPTYLAK	9	Unmodified	_QTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2772827148438	2	518.277106	1034.53966	1.572	0.00081471	-1.4167	-0.00073426	0.15523	8.045E-05	518.2762633807009	23.583	0.3672	23.583	23.395	23.762	0					21	7	4	0	0	0	0.21419	1	8143	8143		59.931	9.8973	1	1564600			31896	4398	22119	22192	32294	32294					0.023771525806068894
QTNPTYLAK	9	Unmodified	_QTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2774047851562	2	518.277106	1034.53966	0.94805	0.00049135	-0.089815	-4.6549E-05	0.85824	0.00044481	518.2769667726935	23.406	0.27679	23.406	23.297	23.574	0					12	6	3	0	0	0	0.19952	1	7122	7122		61.691	15.719	1	262610			31897	4398	22119	22192	32295	32295					0.023771525806068894
QTNRRKKR	8	Unmodified	_QTNRRKKR_					0	0	0		ENST00000479322.1_1_1:218607587-218614701:+|nuORF;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENST00000479322.1_1_1:218607587-218614701:+|nuORF	ENST00000479322.1_1_1:218607587-218614701:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8355102539062	2	543.83378	1085.65301	0.35176	0.0001913	-2.0834	-0.001133	-1.7316	-0.00094173	543.832380603626	18.283	0.52458	18.283	18.198	18.723	0					22	12	3	0	0	0	0.46013	1	5312	5312		63.306	9.9548	1	1088500			31898	1882	22120	22193	32296	32296					0.11360685537010795
QTNRRKKR	8	Unmodified	_QTNRRKKR_					0	0	0		ENST00000479322.1_1_1:218607587-218614701:+|nuORF;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENST00000479322.1_1_1:218607587-218614701:+|nuORF	ENST00000479322.1_1_1:218607587-218614701:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.835693359375	2	543.83378	1085.65301	3.6552	0.0019878	-0.27156	-0.00014768	3.3837	0.0018402	543.8337455647462	18.198	0.16277	18.198	18.092	18.254	0					8	3	3	0	0	0	0.72524	1	5415	5415		27.882	8.5223	1	1867000			31899	1882	22120	22193	32297	32297					0.11360685537010795
QTPAESDFQV	10	Unmodified	_QTPAESDFQV_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.2568969726562	2	561.259111	1120.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.331	1	16.331	15.831	16.831	0								0	0	0	0.27575	1	4645	4645		54.722	6.7628	1				31900	980	22121	22194	32298	32298					-0.051763493868975274
QTPANPWEF	9	Unmodified	_QTPANPWEF_					0	0	0		BUB1|p.K824T|1|0.35|ENSG00000169679|chr2:110641796-110641796|T/G|missense_variant	BUB1|p.K824T|1|0.35|ENSG00000169679|chr2:110641796-110641796|T/G|missense_variant	BUB1|p.K824T|1|0.35|ENSG00000169679|chr2:110641796-110641796|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2557373046875	2	545.253631	1088.49271	3.73	0.0020338	-0.37513	-0.00020454	3.3548	0.0018292	545.2535980302226	27.788	0.31476	27.788	27.628	27.943	0					19	6	5	0	0	0	0.1424	1	9974	9974		69.628	69.628	1	3044600			31901	329	22122	22195	32299	32299					-0.047997069705161266
QTPEQGLL	8	Unmodified	_QTPEQGLL_					0	0	0			REV__ENST00000265052.9_1_3:127408639-127408726:-|nuORF	REV__ENST00000265052.9_1_3:127408639-127408726:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.23626708984375	2	443.23745	884.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.755	1	34.755	34.255	35.255	0								0	0	0	1.7419	1	11377	11377		24.203	0	1		+		31902	18067	22123	22196	32300	32300					0.013495056264787308
QTPKPCGSIE	10	Unmodified	_QTPKPCGSIE_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2603149414062	2	530.260599	1058.50665	2.3857	0.0012651	-0.59114	-0.00031346	1.7946	0.0009516	530.2602628345168	39.883	1.6138	39.883	39.131	40.745	0					160	63	3	0	0	0	0.54861	1	14908	14908		40.058	10.909	1	485520	+		31903	13154	22124	22197	32301	32301					-0.020267975337219468
QTPQQPQQI	9	Unmodified	_QTPQQPQQI_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	356.52117919921875	3	356.520851	1066.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.468	1	25.468	24.968	25.968	0								0	0	0	0.3693	1	7925	7925		19.997	0.89325	1		+		31904	12220	22125	22198	32302	32302					0.010113669495240174
QTPRCWKL	8	Unmodified	_QTPRCWKL_					0	0	0		ENST00000368460.7_2_1:154920014-154920722:-|nuORF;ENST00000498553.5_1_1:154920014-154920722:-|nuORF	ENST00000368460.7_2_1:154920014-154920722:-|nuORF	ENST00000368460.7_2_1:154920014-154920722:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2772216796875	2	516.276386	1030.53822	3.2815	0.0016942	-1.7481	-0.0009025	1.5334	0.00079166	516.2755172507643	18.815	0.39391	18.815	18.685	19.079	0					20	8	3	0	0	0	0.58597	1	5683	5683		51.335	1.7994	1	2005600			31905	8925	22126	22199	32303	32303					0.024172400108682268
QTPVAHRGL	9	Unmodified	_QTPVAHRGL_					0	0	0			REV__ENST00000222248.3_1_19:17988859-17994831:+|nuORF	REV__ENST00000222248.3_1_19:17988859-17994831:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7755432128906	2	489.777608	977.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.376	1	42.376	41.876	42.876	0								0	0	0	0.37496	1	16633	16633		18.324	4.1873	1		+		31906	17891	22127	22200	32304	32304					0.050994117401728545
QTQGGGSVTK	10	Unmodified	_QTQGGGSVTK_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104620-156106879:+|nuORF;ENST00000368298.2_1_1:156104977-156106341:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7481994628906	2	481.748713	961.482873	-0.10533	-5.0743E-05	-0.82648	-0.00039816	-0.93182	-0.0004489	481.7482389241233	12.447	0.10118	12.447	12.398	12.499	0					4	2	2	0	0	0	0.073361	1	2812	2812		101.46	10.683	1	289570			31907	5385	22128	22201	32305	32305					0.0005910502409278706
QTQGLCPEIPD	11	Unmodified	_QTQGLCPEIPD_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;P2RX4|p.T223Qfs*13|1|0.34|ENSG00000135124|chr12:121228783-121228783|A/-|frameshift_variant;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4;ENST00000541187.5_1_12:121647975-121666346:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.7846069335938	2	600.781896	1199.54924	3.1106	0.0018688	1.5532	0.00093313	4.6638	0.0028019	600.7827912989511	13.986	0.1103	13.986	13.931	14.042	0					4	2	2	0	0	0	0.42746	1	3391	3391		49.536	13.089	1	232010			31908	3969	22129	22202	32306	32306					-0.04255447196192108
QTQIDAVCCR	10	Unmodified	_QTQIDAVCCR_					0	0	0		nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;nc|ENSG00000129493|Q86XA9-2|HEATR5A;HEATR5A|p.R359C|1|0.46|ENSG00000129493|chr14:31387234-31387234|G/A|missense_variant;HEATR5A|p.A970Vfs*19|1|0.07|ENSG00000129493|chr14:31345236-31345237|-/AGCTA|frameshift_variant;ENST00000549185.5_3_14:31803609-31872202:-|nuORF	nc|ENSG00000129493|Q86XA9|HEATR5A	nc|ENSG00000129493|Q86XA9|HEATR5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.7652587890625	2	568.762983	1135.51141	0.8351	0.00047498	2.9347	0.0016691	3.7698	0.0021441	568.7647594502774	31.869	0.20572	31.869	31.81	32.015	0					6	4	2	0	0	0	0.32758	1	12074	12074		64.207	14.766	1	65585			31909	3600	22130	22203	32307	32307					-0.05092236662630967
QTQLVQQELN	10	Unmodified	_QTQLVQQELN_					0	0	0			REV__GSE1|p.R1144Q|1|0.42|ENSG00000131149|chr16:85671010-85671010|G/A|missense_variant	REV__GSE1|p.R1144Q|1|0.42|ENSG00000131149|chr16:85671010-85671010|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.8145751953125	2	600.814584	1199.61462	-1.8711	-0.0011242	2.1883	0.0013148	0.31717	0.00019056	600.8159660776383	13.95	0.094551	13.95	13.892	13.986	0					7	4	2	0	0	0	0.56063	1	2878	2878		38.754	4.832	1	63959	+		31910	20710	22131	22204	32308	32308					0.022792903211893645
QTQPIYLAK	9	Unmodified	_QTQPIYLAK_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3037719726562	2	531.303124	1060.5917	1.7209	0.00091433	-0.75289	-0.00040001	0.96803	0.00051432	531.3029096958217	29.097	0.34041	29.097	28.911	29.251	0					17	7	3	0	0	0	0.07136	1	10735	10735		87.696	28.914	1	919620			31911	6989	22132	22205	32309	32309					0.06382315994346754
QTQQAAPSAP	10	Unmodified	_QTQQAAPSAP_					0	0	0		nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.29|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2	nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-4|SDK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7494201660156	2	499.748713	997.482873	2.9191	0.0014588	-1.0894	-0.0005444	1.8298	0.00091442	499.74821624152537	15.138	0.36813	15.138	15.029	15.397	0					16	7	4	0	0	0	0.3337	1	3912	3912		63.534	2.5619	1	2767900			31912	11436	22133	22206	32310	32310					-0.015968949759212592
QTQRVLLEK	9	Unmodified	_QTQRVLLEK_					0	0	0		ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000552879.5_1_12:49494935-49496886:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.8330078125	2	557.83258	1113.65061	1.4254	0.00079514	-0.87262	-0.00048677	0.55279	0.00030836	557.8317887733557	21.137	0.085009	21.137	21.098	21.183	0					4	2	2	0	0	0	0.19891	1	5787	5787		54.722	0	1	42677			31913	4340	22134	22207	32311	32311					0.09832792288693781
QTQSIYIPR	9	Unmodified	_QTQSIYIPR_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3043823242188	2	553.303655	1104.59276	1.8209	0.0010075	-0.87435	-0.00048378	0.94654	0.00052372	553.3032532343514	31.785	0.25689	31.785	31.654	31.911	0					13	6	3	0	0	0	0.24169	1	11618	11618		67.494	16.158	1	232410			31914	2858	22135	22208	32312	32312					0.04464530363247832
QTQSIYIPR	9	Unmodified	_QTQSIYIPR_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3040161132812	2	553.303655	1104.59276	0.87362	0.00048338	-0.041329	-2.2867E-05	0.83229	0.00046051	553.3037355365059	31.777	0.26781	31.777	31.617	31.885	0					11	5	3	0	0	0	0.14673	1	11905	11905		80.455	34.482	1	201090			31915	2858	22135	22208	32313	32313					0.04464530363247832
QTRAAGRPR	9	Unmodified	_QTRAAGRPR_					0	0	0			REV__ENST00000379542.9_1_6:10748006-10749500:+|nuORF	REV__ENST00000379542.9_1_6:10748006-10749500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7926940917969	2	506.791581	1011.56861	2.9387	0.0014893	-0.71155	-0.00036061	2.2271	0.0011287	506.7912354069925	19.17	0.16543	19.17	19.063	19.229	0					12	3	4	0	0	0	0.17854	1	5885	5885		64.207	64.207	1	1702100	+		31916	18758	22136	22209	32314	32314					0.06328734720273133
QTRLIISHK	9	Unmodified	_QTRLIISHK_					0	0	0			REV__FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant	REV__FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	365.8928527832031	3	365.892619	1094.65603	0.4724	0.00017285	-0.28541	-0.00010443	0.18699	6.8417E-05	365.8924960883494	19.755	0.27569	19.755	19.673	19.948	0					14	8	3	0	0	0	0.43426	1	5158	5158		37.812	7.4938	1	405990	+		31917	14762	22137	22210	32315	32315					0.11248515871170639
QTRLIISHK	9	Unmodified	_QTRLIISHK_					0	0	0			REV__FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant	REV__FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.892578125	3	365.892619	1094.65603	-0.14739	-5.393E-05	-0.14658	-5.3633E-05	-0.29397	-0.00010756	365.8926156042429	20.003	0.36666	20.003	19.893	20.26	0					17	7	4	0	0	0	0.32741	1	6267	6267		54.776	7.119	1	1686500	+		31918	14762	22137	22210	32316	32316					0.11248515871170639
QTRPPCGQS	9	Carbamidomethyl (C)	_QTRPPC(Carbamidomethyl (C))GQS_	QTRPPC(1)GQS		QTRPPC(53)GQS		0	1	0			REV__ENST00000514102.5_1_5:176797843-176799073:+|nuORF	REV__ENST00000514102.5_1_5:176797843-176799073:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7402954101562	2	515.740365	1029.46618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.9	1	15.9	15.4	16.4	0								0	0	0	0.18645	1	4440	4440		52.937	8.8199	1		+		31919	16302	22138	22211	32317	32317	582				-0.0473771913350447
QTRRKNSI	8	Unmodified	_QTRRKNSI_					0	0	0			REV__tr|U7SFM6|U7SFM6_FUSNUCRISPR-associatedendoribonucleaseCas2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas2PE=3SV=1	REV__tr|U7SFM6|U7SFM6_FUSNUCRISPR-associatedendoribonucleaseCas2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas2PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7951354980469	2	501.793789	1001.57303	3.5193	0.001766	-0.96455	-0.00048401	2.5547	0.0012819	501.79322653117015	17.706	0.23659	17.706	17.578	17.815	0					20	7	3	0	0	0	0.35045	1	4468	4468		76.774	2.5191	1	1031000	+		31920	21676	22139	22212	32318	32318					0.07230199143168647
QTRVIKKN	8	Unmodified	_QTRVIKKN_					0	0	0		nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1	nc|ENSG00000139151|Q86YW0-2|PLCZ1	nc|ENSG00000139151|Q86YW0-2|PLCZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8083190917969	2	493.808908	985.603263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.344	1	15.344	14.844	15.844	0								0	0	0	1.7419	1	3421	3421		16.473	0	1				31921	4308	22140	22213	32319	32319					0.10988557808366295
QTSGSLVSK	9	Unmodified	_QTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.74853515625	2	453.748182	905.481811	0.60062	0.00027253	-0.52366	-0.00023761	0.076967	3.4924E-05	453.74795193741585	17.643	0.15375	17.643	17.566	17.72	0					6	4	2	0	0	0	0.076532	1	4255	4255		85.862	13.984	1	189430			31922	6102	22141	22214	32320	32320					0.025288906551850232
QTSGSLVSK	9	Unmodified	_QTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.7479248046875	2	453.748182	905.481811	0.30265	0.00013733	-0.78897	-0.000358	-0.48632	-0.00022067	453.7477766036021	17.967	0.24794	17.967	17.866	18.114	0					12	5	3	0	0	0	0.037712	1	5178	5178		101.46	16.299	1	2072500			31923	6102	22141	22214	32321	32321					0.025288906551850232
QTSIGYGVR	9	Unmodified	_QTSIGYGVR_					0	0	0		ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.760986328125	2	490.761623	979.508694	-2.7623	-0.0013557	1.8952	0.00093011	-0.8671	-0.00042554	490.76254667744206	16.439	0.31008	16.439	16.285	16.595	0					11	8	2	0	0	0	0.25716	1	3887	3887		54.776	8.8244	1	137600			31924	6891	22142	22215	32322	32322					0.01811999266374187
QTSLHRRS	8	Unmodified	_QTSLHRRS_					0	0	0		ENST00000296550.11_1_4:150999880-151000132:+|nuORF	ENST00000296550.11_1_4:150999880-151000132:+|nuORF	ENST00000296550.11_1_4:150999880-151000132:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.77093505859375	2	492.770314	983.526075	3.4563	0.0017031	-1.5809	-0.000779	1.8754	0.00092415	492.76959521799705	17.695	0.14929	17.695	17.604	17.754	0					6	4	2	0	0	0	0.58597	1	4482	4482		51.335	51.335	1	139070			31925	8460	22143	22216	32323	32323					0.03365339592039618
QTSPATLGLP	10	Unmodified	_QTSPATLGLP_					0	0	0		ENST00000566270.5_1_16:28996642-28997322:+|nuORF	ENST00000566270.5_1_16:28996642-28997322:+|nuORF	ENST00000566270.5_1_16:28996642-28997322:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	328.8500061035156	3	328.850197	983.528761	0.2852	9.3787E-05	-0.55443	-0.00018232	-0.26923	-8.8536E-05	328.8499516958056	14.922	0.15396	14.922	14.875	15.029	0					14	6	3	0	0	0	0.67098	1	3143	3143		24.232	2.5461	1	705470			31926	10761	22144	22217	32324	32324					0.036337502063247484
QTSVTLLW	8	Unmodified	_QTSVTLLW_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;chr12:15595640-15596090|345|13.48|0.69|4.28|+|ENST00000674286|PTPRO,PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.76123046875	2	474.263468	946.512382	2.3612	0.0011198	-3.2404	-0.0015368	-0.87927	-0.00041701	474.26214658020774	41.823	0.89639	41.823	41.546	42.443	0					55	24	3	0	0	0	0.63077	1	16597	16597		44.117	1.7207	1	381960			31927	4967	22145	22218	32325	32325					0.03698669040238656
QTSYNNKFK	9	Unmodified	_QTSYNNKFK_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2859497070312	2	565.285463	1128.55637	1.7166	0.00097035	0.050011	2.827E-05	1.7666	0.00099862	565.28550048097	26.747	0.16835	26.747	26.637	26.805	0					10	3	4	0	0	0	0.14603	1	9498	9498		68.787	4.5796	1	2159300	+		31928	13016	22146	22219	32326	32326					-0.002763465334510329
QTTASCSVL	9	Unmodified	_QTTASCSVL_					0	0	0			REV__ENST00000381637.3_1_19:55501058-55501561:+|nuORF	REV__ENST00000381637.3_1_19:55501058-55501561:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2217712402344	2	455.220943	908.427332	-0.51842	-0.000236	2.701	0.0012295	2.1825	0.00099354	455.2220822114079	12.667	0.092189	12.667	12.618	12.71	0					6	2	3	0	0	0	0.48389	1	2916	2916		34.173	0	1	344500	+		31929	12941	22147	22220	32327	32327					-0.030544444878842114
QTTEFGIHK	9	Unmodified	_QTTEFGIHK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;ENST00000523182.5_1_8:37720415-37730726:-|nuORF	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7747802734375	2	530.774731	1059.53491	1.7249	0.00091555	-0.25603	-0.00013589	1.4689	0.00077966	530.7747245375717	22.952	0.36754	22.952	22.845	23.212	0					25	7	5	0	0	0	0.037098	1	7852	7852		117.81	46.995	1	1711200			31930	5184	22148	22221	32328	32328					0.007522684378500344
QTTEFGIHK	9	Unmodified	_QTTEFGIHK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;ENST00000523182.5_1_8:37720415-37730726:-|nuORF	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7747802734375	2	530.774731	1059.53491	1.6713	0.00088711	0.19969	0.00010599	1.871	0.0009931	530.7749059624616	22.982	0.36281	22.982	22.872	23.235	0					22	7	4	0	0	0	0.10821	1	7714	7714		80.455	22.225	1	1447100			31931	5184	22148	22221	32329	32329					0.007522684378500344
QTTEHIVK	8	Unmodified	_QTTEHIVK_					0	0	0		ENSG00000067704|ENST00000366922|IARS2;ENST00000490891.1_1_1:220287805-220307963:+|nuORF;IARS2|p.Y609Sfs*33|1|0.05|ENSG00000067704|chr1:220126831-220126832|-/CAGAAAATGAA|frameshift_variant	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2656555175781	2	478.263999	954.513445	2.2469	0.0010746	1.5241	0.00072893	3.771	0.0018035	478.2647938992808	41.099	0.35314	41.099	40.959	41.313	0					11	8	2	0	0	0	0.5535	1	16335	16335		54.776	0	1	186770			31932	1412	22149	22222	32330	32330					0.03436883409131042
QTTLKNWK	8	Unmodified	_QTTLKNWK_					0	0	0		ENST00000540638.6_2_18:5433923-5434031:-|nuORF	ENST00000540638.6_2_18:5433923-5434031:-|nuORF	ENST00000540638.6_2_18:5433923-5434031:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7879638671875	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.418	1	16.418	15.918	16.918	0								0	0	0	1.7419	1	3932	3932		40.778	0	1				31933	10537	22150	22223	32331	32331					0.05265162680132107
QTTQIEKL	8	Unmodified	_QTTQIEKL_					0	0	0			REV__nc|ENSG00000156970|O60566-2|BUB1B	REV__nc|ENSG00000156970|O60566-2|BUB1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.771240234375	2	480.771657	959.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.853	1	18.853	18.353	19.353	0								0	0	0	1.7419	1	4765	4765		74.255	0	1		+		31934	15645	22151	22224	32332	32332					0.04737750206345481
QTVADLKHAI	10	Unmodified	_QTVADLKHAI_					0	0	0		RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant;RB1CC1|p.L547Ffs*7|1|0.05|ENSG00000023287|chr8:52660644-52660645|-/A|frameshift_variant;RB1CC1|p.N872Kfs*2|1|0.31|ENSG00000023287|chr8:52657213-52657214|-/T|frameshift_variant;RB1CC1|p.L965Afs*4|1|0.35|ENSG00000023287|chr8:52656937-52656938|-/T|frameshift_variant;RB1CC1|p.K964Sfs*13|1|0.31|ENSG00000023287|chr8:52656938-52656938|T/-|frameshift_variant;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant	RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.311767578125	2	548.31148	1094.60841	0.63689	0.00034921	-0.24158	-0.00013246	0.39531	0.00021675	548.3114155831273	20.447	0.26609	20.447	20.28	20.546	0					11	5	3	0	0	0	0.41335	1	6638	6638		54.776	0	1	117000			31935	1119	22152	22225	32333	32333					0.06488816880323611
QTVAVGVIK	9	Unmodified	_QTVAVGVIK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7873229980469	2	457.78711	913.559667	0.66759	0.00030561	0.2157	9.8746E-05	0.88329	0.00040436	457.787005796099	28.432	0.15132	28.432	28.351	28.503	0					8	5	2	0	0	0	0.4966	1	8897	8897		32.812	6.0163	1	72101			31936	5177	22153	22226	32334	32334					0.09942948311243072
QTVAVGVIK	9	Unmodified	_QTVAVGVIK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7871398925781	2	457.78711	913.559667	0.19801	9.0648E-05	-0.84535	-0.00038699	-0.64734	-0.00029634	457.7869083662966	28.71	0.22046	28.71	28.614	28.835	0					11	5	3	0	0	0	0.38666	1	10164	10164		42.864	10.052	1	773950			31937	5177	22153	22226	32335	32335					0.09942948311243072
QTVAVGVIK	9	Unmodified	_QTVAVGVIK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7867431640625	2	457.78711	913.559667	-0.15273	-6.9917E-05	-0.73698	-0.00033738	-0.88971	-0.0004073	457.78686964649893	28.703	0.21776	28.703	28.628	28.846	0					7	4	2	0	0	0	0.39215	1	10550	10550		42.396	6.7778	1	566260			31938	5177	22153	22226	32336	32336					0.09942948311243072
QTVKVINQY	9	Unmodified	_QTVKVINQY_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000548656.2_1_14:19411434-19411701:-|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.8059692382812	2	546.806031	1091.59751	0.33806	0.00018485	-0.5054	-0.00027636	-0.16734	-9.1504E-05	546.8056054487383	25.18	0.26618	25.18	25.024	25.29	0					11	5	3	0	0	0	0.22377	1	8894	8894		58.782	5.8453	1	240820			31939	2220	22154	22227	32337	32337					0.05537414506034111
QTVQGTFSK	9	Unmodified	_QTVQGTFSK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.26116943359375	2	498.261456	994.50836	0.2288	0.000114	-0.30496	-0.00015195	-0.076155	-3.7945E-05	498.26118053304907	22.361	0.20162	22.361	22.279	22.481	0					14	5	4	0	0	0	0.061298	1	6301	6301		91.265	27.058	1	1127900			31940	7237	22155	22228	32338	32338					0.01088579546535584
QTVQGTFSK	9	Unmodified	_QTVQGTFSK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2611999511719	2	498.261456	994.50836	0.69147	0.00034453	-0.8453	-0.00042118	-0.15383	-7.6649E-05	498.2609475401096	22.69	0.29633	22.69	22.561	22.858	0					21	7	4	0	0	0	0.010427	1	7398	7398		140.11	26.701	1	5072300			31941	7237	22155	22228	32339	32339					0.01088579546535584
QTVQGTFSK	9	Unmodified	_QTVQGTFSK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2611389160156	2	498.261456	994.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.581	1	22.581	22.081	23.081	0								0	0	0	0.0016356	1	7663	7663		123.21	32.838	1				31942	7237	22155	22228	32340	32340					0.01088579546535584
QTVQGTFSK	9	Unmodified	_QTVQGTFSK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2612609863281	2	498.261456	994.50836	0.17505	8.7223E-05	-0.22493	-0.00011207	-0.049875	-2.4851E-05	498.26122086991387	22.465	0.24218	22.465	22.376	22.618	0					14	5	4	0	0	0	0.090954	1	6688	6688		81.525	26.749	1	716710			31943	7237	22155	22228	32341	32341					0.01088579546535584
QTVQGTFSK	9	Unmodified	_QTVQGTFSK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2613830566406	2	498.261456	994.50836	1.0288	0.00051262	-0.93867	-0.0004677	0.090154	4.492E-05	498.260960873538	22.581	0.36662	22.581	22.472	22.839	0					22	7	4	0	0	0	0.046074	1	7519	7519		96.665	29.171	1	6395200			31944	7237	22155	22228	32342	32342					0.01088579546535584
QTVQLLIKK	9	Unmodified	_QTVQLLIKK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.5692138671875	3	357.569253	1069.68593	0.87346	0.00031232	-1.0543	-0.00037698	-0.18083	-6.4661E-05	357.5689798392319	27.854	0.14758	27.854	27.805	27.953	0					6	3	2	0	0	0	0.38666	1	9791	9791		42.864	6.4175	1	88566			31945	2899	22156	22229	32343	32343					0.1538745481652768
QTWGPGTL	8	Unmodified	_QTWGPGTL_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.2204284667969	2	430.21906	858.423567	2.5231	0.0010855	0.67239	0.00028927	3.1954	0.0013747	430.21947468483535	33.559	0.2686	33.559	33.415	33.684	0					15	5	4	0	0	0	0.60719	1	12763	12763		47.916	0	1	706730			31946	6310	22157	22230	32344	32344					-0.011307461994192636
QTYEEALYK	9	Unmodified	_QTYEEALYK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.7799682617188	2	572.779679	1143.5448	1.7111	0.00098011	-0.95288	-0.00054579	0.75827	0.00043432	572.7793093693344	31.027	0.2239	31.027	30.916	31.14	0					12	5	3	0	0	0	0.35021	1	11256	11256		45.972	5.1941	1	277090			31947	2445	22158	22231	32345	32345					-0.021225883474244256
QTYEEALYK	9	Unmodified	_QTYEEALYK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.7802124023438	2	572.779679	1143.5448	0.076072	4.3573E-05	0.49587	0.00028402	0.57194	0.0003276	572.7800117378844	30.81	0.18661	30.81	30.742	30.929	0					14	6	3	0	0	0	0.41113	1	10160	10160		40.778	6.6056	1	289180			31948	2445	22158	22231	32346	32346					-0.021225883474244256
QTYEEALYK	9	Unmodified	_QTYEEALYK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.7796630859375	2	572.779679	1143.5448	2.0231	0.0011588	-2.0199	-0.001157	0.0031666	1.8138E-06	572.7786582942998	31.083	0.32313	31.083	30.982	31.305	0					20	7	4	0	0	0	0.012231	1	11678	11678		136.27	51.107	1	967310			31949	2445	22158	22231	32347	32347					-0.021225883474244256
QTYEEALYK	9	Unmodified	_QTYEEALYK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.7802124023438	2	572.779679	1143.5448	0.61395	0.00035166	0.2151	0.0001232	0.82905	0.00047486	572.7797108313786	30.834	0.15119	30.834	30.764	30.915	0					11	4	3	0	0	0	0.11898	1	10542	10542		75.043	25.507	1	183100			31950	2445	22158	22231	32348	32348					-0.021225883474244256
QTYEEALYK	9	Unmodified	_QTYEEALYK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.7794799804688	2	572.779679	1143.5448	-1.4449	-0.00082763	1.3556	0.00077646	-0.089339	-5.1171E-05	572.7806463844784	30.829	0.18896	30.829	30.714	30.903	0					7	5	2	0	0	0	0.24334	1	10550	10550		56.434	5.2411	1	131520			31951	2445	22158	22231	32349	32349					-0.021225883474244256
QTYEEALYK	9	Unmodified	_QTYEEALYK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.7799682617188	2	572.779679	1143.5448	1.6513	0.00094582	-1.1682	-0.00066912	0.48307	0.0002767	572.778960910359	31.019	0.30888	31.019	30.865	31.174	0					11	6	2	0	0	0	0.0059092	1	11539	11539		154.12	63.749	1	1281400			31952	2445	22158	22231	32350	32350					-0.021225883474244256
QTYEEALYK	9	Unmodified	_QTYEEALYK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.281005859375	2	572.779679	1143.5448	3.3733	0.0019321	-3.6853	-0.0021109	-0.31203	-0.00017873	573.2790299040239	31.003	0.36044	31.003	30.898	31.258	0					11	7	2	0	0	0	0.047855	1	11556	11556		96.034	39.313	1	915970			31953	2445	22158	22231	32351	32351					-0.021225883474244256
QTYSTEPNNLK	11	Unmodified	_QTYSTEPNNLK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	647.817138671875	2	647.817324	1293.62009	0.22561	0.00014615	0.16939	0.00010973	0.395	0.00025589	647.8172469082833	23.637	0.16221	23.637	23.561	23.723	0					10	5	3	0	0	0	0.48922	1	6866	6866		45.022	4.244	1	90549			31954	2517	22159	22232	32352	32352					-0.014970308869806104
QTYSTEPNNLK	11	Unmodified	_QTYSTEPNNLK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	647.81787109375	2	647.817324	1293.62009	-0.65969	-0.00042736	1.2065	0.00078158	0.5468	0.00035423	647.8183234235642	23.85	0.16819	23.85	23.779	23.947	0					7	3	3	0	0	0	0.44025	1	8282	8282		48.602	15.851	1	125790			31955	2517	22159	22232	32353	32353					-0.014970308869806104
QTYSTEPNNLK	11	Unmodified	_QTYSTEPNNLK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	647.8173217773438	2	647.817324	1293.62009	-2.3539	-0.0015249	3.5207	0.0022808	1.1669	0.00075592	647.8194566668006	23.71	0.16668	23.71	23.627	23.794	0					9	4	3	0	0	0	0.38515	1	7290	7290		53.089	20.338	1	109330			31956	2517	22159	22232	32354	32354					-0.014970308869806104
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7770385742188	2	519.776939	1037.53933	1.41	0.0007329	-0.44784	-0.00023278	0.96218	0.00050012	519.7766820914478	27.013	0.8336	27.013	26.886	27.72	0					42	20	4	0	0	0	0.11411	1	9361	9361		76.17	15.198	1	14380000			31957	4594	22160	22233	32355	32355					0.022057328607616
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7769775390625	2	519.776939	1037.53933	1.3571	0.00070539	-0.80313	-0.00041745	0.55398	0.00028794	519.7765290873818	26.825	0.25995	26.825	26.704	26.964	0					15	6	3	0	0	0	0.011389	1	8689	8689		138.06	33.316	1	784890			31958	4594	22160	22233	32356	32356					0.022057328607616
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7769775390625	2	519.776939	1037.53933	0.3127	0.00016253	0.99059	0.00051489	1.3033	0.00067742	519.7774450799096	26.961	0.42008	26.961	26.852	27.272	0					21	8	3	0	0	0	0.013298	1	9577	9577		133.99	29.247	1	12857000			31959	4594	22160	22233	32357	32357					0.022057328607616
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.77734375	2	519.776939	1037.53933	1.6155	0.00083968	-0.69378	-0.00036061	0.92169	0.00047907	519.7766203953297	26.944	0.52066	26.944	26.836	27.357	0					25	10	3	0	0	0	0.0079272	1	9593	9593		145.46	40.714	1	10391000			31960	4594	22160	22233	32358	32358					0.022057328607616
QVAAMNYRL	9	Unmodified	_QVAAMNYRL_					0	0	0		ENSG00000159496|ENST00000290691|RGL4;nc|ENSG00000159496|Q8IZJ4-2|RGL4	ENSG00000159496|ENST00000290691|RGL4	ENSG00000159496|ENST00000290691|RGL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.79296875	2	533.279126	1064.5437	0.71554	0.00038158	0.49628	0.00026466	1.2118	0.00064624	533.2793455015213	32.379	0.51877	32.379	32.27	32.789	0					18	10	3	0	0	0	0.51817	1	12167	12167		30.504	0	1	493220			31961	5321	22161	22234	32359	32359					0.014009188026875563
QVAAVTFAQKL	11	Unmodified	_QVAAVTFAQKL_					0	0	0			REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.3431396484375	2	588.342781	1174.67101	1.453	0.00085486	-1.611	-0.0009478	-0.15796	-9.2935E-05	588.3417744634734	38.616	0.15112	38.616	38.505	38.656	0					8	5	2	0	0	0	0.30836	1	15147	15147		61.691	6.1871	1	78255	+		31962	13122	22162	22235	32360	32360					0.09065962948511697
QVADSTFTVLK	11	Unmodified	_QVADSTFTVLK_					0	0	0		nc|ENSG00000050748|P45984-5|MAPK9;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9	nc|ENSG00000050748|P45984-5|MAPK9	nc|ENSG00000050748|P45984-5|MAPK9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.8291625976562	2	604.829703	1207.64485	1.6536	0.0010001	-1.5774	-0.00095408	0.07613	4.6046E-05	604.8287811923982	37.286	0.17567	37.286	37.2	37.376	0					7	5	2	0	0	0	0.30836	1	14581	14581		61.691	13.732	1	82688			31963	1251	22163	22236	32361	32361					0.04933648986366279
QVADSTFTVLK	11	Unmodified	_QVADSTFTVLK_					0	0	0		nc|ENSG00000050748|P45984-5|MAPK9;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9	nc|ENSG00000050748|P45984-5|MAPK9	nc|ENSG00000050748|P45984-5|MAPK9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	604.8291015625	2	604.829703	1207.64485	0.031806	1.9237E-05	-0.1557	-9.4174E-05	-0.1239	-7.4937E-05	604.8292511477607	37.227	0.21226	37.227	37.12	37.332	0					6	4	2	0	0	0	0.63225	1	14548	14548		34.087	2.5567	1	106060			31964	1251	22163	22236	32362	32362					0.04933648986366279
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7872924804688	2	518.787307	1035.56006	1.4105	0.00073176	-1.1164	-0.00057917	0.29413	0.00015259	518.7868356859108	31.849	0.13799	31.849	31.794	31.932	0					10	5	2	0	0	0	0.19605	1	10263	10263		62.107	5.6736	1	104300			31965	4262	22164	22237	32363	32363					0.043703232404368464
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.78759765625	2	518.787307	1035.56006	1.3611	0.00070612	-0.67751	-0.00035148	0.6836	0.00035464	518.7869469546771	32.142	0.29647	32.142	32.018	32.315	0					15	7	3	0	0	0	0.02429	1	11767	11767		114.89	26.718	1	643420			31966	4262	22164	22237	32364	32364					0.043703232404368464
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7874145507812	2	518.787307	1035.56006	0.13844	7.1821E-05	0.40508	0.00021015	0.54352	0.00028197	518.787596791952	31.912	0.15616	31.912	31.837	31.994	0					10	6	2	0	0	0	0.27123	1	10609	10609		53.089	5.4316	1	101930			31967	4262	22164	22237	32365	32365					0.043703232404368464
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7874145507812	2	518.787307	1035.56006	1.1036	0.00057252	-0.36552	-0.00018963	0.73806	0.0003829	518.7871787431222	32.1	0.30444	32.1	32.001	32.306	0					9	6	2	0	0	0	0.029571	1	12180	12180		109.44	26.688	1	241120			31968	4262	22164	22237	32366	32366					0.043703232404368464
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7876586914062	2	518.787307	1035.56006	1.5951	0.00082752	-1.1092	-0.00057546	0.48586	0.00025206	518.7866527906614	32.089	0.20972	32.089	32.032	32.242	0					7	4	2	0	0	0	0.017421	1	12173	12173		126.24	30.427	1	527630			31969	4262	22164	22237	32367	32367					0.043703232404368464
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7888793945312	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.909	1	31.909	31.409	32.409	0								0	0	0	0.13425	1	11039	11039		63.534	5.3039	1				31970	4262	22164	22237	32368	32368					0.043703232404368464
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7872924804688	2	518.787307	1035.56006	0.27141	0.0001408	0.30426	0.00015785	0.57567	0.00029865	518.7874525299462	32.076	0.26713	32.076	31.969	32.236	0					13	5	4	0	0	0	0.014413	1	12068	12068		131.62	38.019	1	609800			31971	4262	22164	22237	32369	32369					0.043703232404368464
QVAEIVSKY	9	Unmodified	_QVAEIVSKY_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.787841796875	2	518.787307	1035.56006	1.5914	0.00082562	-0.98849	-0.00051282	0.60295	0.0003128	518.7868112120356	32.111	0.21968	32.111	32	32.219	0					11	4	4	0	0	0	0.015992	1	12062	12062		128.6	35.459	1	714340			31972	4262	22164	22237	32370	32370					0.043703232404368464
QVAEQVLQQ	9	Unmodified	_QVAEQVLQQ_					0	0	0		PARP10|p.R228Q|1|0.17|ENSG00000178685|chr8:143985319-143985319|C/T|missense_variant	PARP10|p.R228Q|1|0.17|ENSG00000178685|chr8:143985319-143985319|C/T|missense_variant	PARP10|p.R228Q|1|0.17|ENSG00000178685|chr8:143985319-143985319|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7799072265625	2	521.780013	1041.54547	-0.11754	-6.133E-05	-3.4306	-0.00179	-3.5481	-0.0018513	521.7782420939797	12.747	0.3538	12.747	12.659	13.012	0					16	8	4	0	0	0	0.19605	1	2976	2976		62.107	0	1	1663800			31973	11898	22165	22238	32371	32371					0.026362510922808724
QVAGFCASFL	10	Unmodified	_QVAGFCASFL_					0	0	0		ENST00000533764.5_1_8:145690205-145690799:-|nuORF	ENST00000533764.5_1_8:145690205-145690799:-|nuORF	ENST00000533764.5_1_8:145690205-145690799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7542724609375	2	521.754953	1041.49535	-0.12806	-6.6815E-05	0.82118	0.00042846	0.69313	0.00036164	521.754991372655	20.069	0.16653	20.069	19.995	20.161	0					5	3	2	0	0	0	0.60076	1	6455	6455		34.173	1.3601	1	111660			31974	10464	22166	22239	32372	32372					-0.023735748372246235
QVAGKGVLI	9	Unmodified	_QVAGKGVLI_					0	0	0			REV__AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant	REV__AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.78118896484375	2	442.781828	883.549102	-0.26012	-0.00011518	-0.22351	-9.8968E-05	-0.48363	-0.00021414	442.7817147513982	17.021	0.60565	17.021	16.729	17.334	0					29	12	4	0	0	0	0.25109	1	5067	5067		55.504	2.5675	1	4203800	+		31975	12170	22167	22240	32373	32373					0.10266965656808225
QVAHVQGGIRL	11	Unmodified	_QVAHVQGGIRL_					0	0	0			REV__ENSG00000062650|ENST00000298767|WAPL	REV__ENSG00000062650|ENST00000298767|WAPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.344970703125	2	589.343646	1176.67274	1.111	0.00065475	-0.71662	-0.00042233	0.39436	0.00023242	589.3432095405228	51.621	0.45902	51.621	51.442	51.901	0					38	29	2	0	0	0	0.7326	1	15912	15912		24.519	6.2571	1	62826	+		31976	13092	22168	22241	32374	32374					0.09147016757151505
QVAKVFDQY	9	Unmodified	_QVAKVFDQY_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;SCFD1|p.V202Cfs*43|1|0.35|ENSG00000092108|chr14:30643389-30643390|-/T|frameshift_variant	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2860107421875	2	549.284931	1096.55531	0.54188	0.00029765	1.1559	0.0006349	1.6977	0.00093255	549.2855427536057	34.315	0.13266	34.315	34.225	34.358	0					5	3	2	0	0	0	0.16806	1	13228	13228		65.465	12.114	1	36824			31977	1866	22169	22242	32375	32375					0.010894390976773138
QVALTRHK	8	Unmodified	_QVALTRHK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.M2832Nfs*53|1|0.25|ENSG00000131018|chr6:152385831-152385832|-/T|frameshift_variant;SYNE1|p.I2756*|1|0.12|ENSG00000131018|chr6:152387293-152387293|T/-|frameshift_variant;SYNE1|p.N2333Kfs*2|1|0.32|ENSG00000131018|chr6:152401168-152401169|-/T|frameshift_variant;SYNE1|p.S2126Pfs*10|1|0.33|ENSG00000131018|chr6:152409564-152409564|A/-|frameshift_variant;SYNE1|p.A1810T|1|0.19|ENSG00000131018|chr6:152417009-152417009|C/T|missense_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.788330078125	2	476.787976	951.561398	-1.5107	-0.0007203	1.2028	0.00057346	-0.30797	-0.00014684	476.7888786815577	14.975	0.095926	14.975	14.926	15.022	0					6	4	2	0	0	0	0.59773	1	3331	3331		49.442	3.4896	1	95551			31978	3690	22170	22243	32376	32376					0.08368002119846096
QVALTRHK	8	Unmodified	_QVALTRHK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.M2832Nfs*53|1|0.25|ENSG00000131018|chr6:152385831-152385832|-/T|frameshift_variant;SYNE1|p.I2756*|1|0.12|ENSG00000131018|chr6:152387293-152387293|T/-|frameshift_variant;SYNE1|p.N2333Kfs*2|1|0.32|ENSG00000131018|chr6:152401168-152401169|-/T|frameshift_variant;SYNE1|p.S2126Pfs*10|1|0.33|ENSG00000131018|chr6:152409564-152409564|A/-|frameshift_variant;SYNE1|p.A1810T|1|0.19|ENSG00000131018|chr6:152417009-152417009|C/T|missense_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7877502441406	2	476.787976	951.561398	-0.36552	-0.00017428	-0.35356	-0.00016857	-0.71908	-0.00034285	476.78802090092177	15.015	0.069697	15.015	14.984	15.054	0					4	2	2	0	0	0	0.51384	1	3292	3292		58.782	14.665	1	82631			31979	3690	22170	22243	32377	32377					0.08368002119846096
QVANKNVAK	9	Unmodified	_QVANKNVAK_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.V504A|1|0.34|ENSG00000143514|chr1:223798652-223798652|A/G|missense_variant	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2855529785156	2	486.285266	970.555979	1.2242	0.00059531	-0.86528	-0.00042077	0.35893	0.00017454	486.285063622184	16.739	0.10085	16.739	16.642	16.743	0					6	3	2	0	0	0	0.099922	1	3860	3860		79.451	2.1334	1	69291			31980	4562	22171	22244	32378	32378					0.06952278537369239
QVAPESHW	8	Unmodified	_QVAPESHW_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF;ENST00000563785.5_1_16:88722464-88729488:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2263488769531	2	477.227417	952.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.483	1	21.483	20.983	21.983	0								0	0	0	1.7419	1	6236	6236		25.45	1.2474	1				31981	5994	22172	22245	32379	32379					-0.03784245313477186
QVAPVANSY	9	Unmodified	_QVAPVANSY_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7432861328125	2	474.742899	947.471246	0.95265	0.00045227	-0.50196	-0.0002383	0.4507	0.00021396	474.74258727793534	30.34	0.29028	30.34	30.238	30.528	0					18	10	3	0	0	0	0.032052	1	9664	9664		107.01	22.092	1	362980			31982	5221	22173	22246	32380	32380					-0.004590919992438103
QVAPVANSY	9	Unmodified	_QVAPVANSY_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7423095703125	2	474.742899	947.471246	-0.12041	-5.7163E-05	-0.73552	-0.00034919	-0.85593	-0.00040635	474.7425194247484	30.656	0.27711	30.656	30.563	30.841	0					13	6	3	0	0	0	0.0406	1	11472	11472		98.629	27.334	1	629320			31983	5221	22173	22246	32381	32381					-0.004590919992438103
QVAVNILK	8	Unmodified	_QVAVNILK_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH11|p.C1849Sfs*8|1|0.05|ENSG00000105877|chr7:21683868-21683869|-/CTAAAATTCTCATAAATAG|frameshift_variant;DNAH11|p.K1250Nfs*43|1|0.63|ENSG00000105877|chr7:21606522-21606522|A/-|frameshift_variant;DNAH11|p.C1251Mfs*5|1|0.41|ENSG00000105877|chr7:21606521-21606522|-/A|frameshift_variant;DNAH11|p.Q945Kfs*4|1|0.32|ENSG00000105877|chr7:21599946-21599946|T/-|frameshift_variant;DNAH11|p.K873Nfs*4|1|0.31|ENSG00000105877|chr7:21591523-21591523|A/-|frameshift_variant;DNAH11|p.N833Tfs*2|1|0.17|ENSG00000105877|chr7:21591404-21591404|A/-|frameshift_variant;DNAH11|p.L441Ifs*25|1|0.26|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7813720703125	2	442.781828	883.549102	-0.26012	-0.00011518	-0.22351	-9.8968E-05	-0.48363	-0.00021414	442.7817147513982	17.021	0.60565	17.021	16.729	17.334	0					29	12	4	0	0	0	0.66372	1	4899	4899		38.806	0	1	4203800			31984	812	22174	22247	32382	32382					0.10266965656796856
QVCDVVLNH	9	Carbamidomethyl (C)	_QVC(Carbamidomethyl (C))DVVLNH_	QVC(1)DVVLNH		QVC(70)DVVLNH		0	1	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.26708984375	2	542.266216	1082.51788	1.7992	0.00097565	0.21171	0.00011481	2.0109	0.0010905	542.2663812009154	30.168	0.18097	30.168	30.089	30.27	0					14	6	3	0	0	0	0.1424	1	9572	9572		69.628	20.186	1	271280			31985	1245	22175	22248	32383	32383	46				-0.02007975439596521
QVCDVVLNH	9	Carbamidomethyl (C)	_QVC(Carbamidomethyl (C))DVVLNH_	QVC(1)DVVLNH		QVC(180)DVVLNH		0	1	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2666015625	2	542.266216	1082.51788	1.8874	0.0010235	-1.4018	-0.00076014	0.48562	0.00026334	542.2655867809249	30.45	0.34064	30.45	30.284	30.624	0					23	8	4	0	0	0	0.0012088	1	10969	10969		180.87	76.123	1	1859200			31986	1245	22175	22248	32384	32384	46				-0.02007975439596521
QVCDVVLNH	9	Carbamidomethyl (C)	_QVC(Carbamidomethyl (C))DVVLNH_	QVC(1)DVVLNH		QVC(67)DVVLNH		0	1	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.2683715820312	2	542.266216	1082.51788	0.21369	0.00011587	0.60605	0.00032864	0.81973	0.00044451	542.2667535127835	30.217	0.30384	30.217	30.118	30.422	0					20	10	3	0	0	0	0.15163	1	9886	9886		67.494	17.958	1	465400			31987	1245	22175	22248	32385	32385	46				-0.02007975439596521
QVCDVVLNH	9	Carbamidomethyl (C)	_QVC(Carbamidomethyl (C))DVVLNH_	QVC(1)DVVLNH		QVC(160)DVVLNH		0	1	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2669677734375	2	542.266216	1082.51788	2.041	0.0011068	-1.3263	-0.00071921	0.71468	0.00038755	542.2656145823473	30.451	0.29532	30.451	30.306	30.601	0					13	6	3	0	0	0	0.0040894	1	11372	11372		162.25	52.133	1	2060000			31988	1245	22175	22248	32386	32386	46				-0.02007975439596521
QVCDVVLNH	9	Carbamidomethyl (C)	_QVC(Carbamidomethyl (C))DVVLNH_	QVC(1)DVVLNH		QVC(110)DVVLNH		0	1	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2670288085938	2	542.266216	1082.51788	1.0633	0.00057657	-0.13386	-7.259E-05	0.9294	0.00050398	542.2661992963438	30.224	0.19584	30.224	30.106	30.302	0					14	5	4	0	0	0	0.02953	1	10259	10259		109.48	65.101	1	344690			31989	1245	22175	22248	32387	32387	46				-0.02007975439596521
QVCDVVLNH	9	Carbamidomethyl (C)	_QVC(Carbamidomethyl (C))DVVLNH_	QVC(1)DVVLNH		QVC(51)DVVLNH		0	1	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2672729492188	2	542.266216	1082.51788	-1.4869	-0.00080631	2.1471	0.0011643	0.66017	0.00035799	542.2675183911534	30.216	0.20216	30.216	30.133	30.335	0					12	5	3	0	0	0	0.2873	1	10252	10252		51.335	17.163	1	269250			31990	1245	22175	22248	32388	32388	46				-0.02007975439596521
QVCDVVLNH	9	Unmodified	_QVCDVVLNH_					0	0	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.75634765625	2	513.755484	1025.49641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.299	1	33.299	32.799	33.799	0								0	0	0	0.21054	1	12736	12736		49.442	10.635	1				31991	1245	22175	22249	32389	32389					-0.015313604683115045
QVCKAHND	8	Unmodified	_QVCKAHND_					0	0	0		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8;ENST00000568284.1_1_16:90108802-90109750:+|nuORF;ENST00000564789.5_1_16:90106452-90109750:+|nuORF;ENST00000569558.5_1_16:90103573-90109750:+|nuORF	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.70831298828125	2	457.711076	913.4076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.933	1	16.933	16.433	17.433	0								0	0	0	1.7419	1	4150	4150		38.806	0	1				31992	4421	22176	22250	32390	32390					-0.05256775707982797
QVCLLVEYKP	10	Unmodified	_QVCLLVEYKP_					0	0	0			REV__UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant	REV__UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.327880859375	2	596.325742	1190.63693	3.1669	0.0018885	0.44657	0.0002663	3.6134	0.0021548	596.3260569400582	35.498	0.47549	35.498	35.245	35.721	0					23	9	3	0	0	0	0.59277	1	13702	13702		35.152	7.2698	1	700050	+		31993	15371	22177	22251	32391	32391					0.04923798465256368
QVCRPVRP	8	Unmodified	_QVCRPVRP_					0	0	0			REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|35|3|sense	REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|35|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7690124511719	2	477.768729	953.522904	-0.42318	-0.00020218	0.84448	0.00040347	0.4213	0.00020128	477.7691488823318	11.333	0.11637	11.333	11.281	11.397	0					9	4	3	0	0	0	0.7126	1	2297	2297		31.955	5.1588	1	536800	+		31994	21639	22178	22252	32392	32392					0.0442837321368188
QVDFSVPEIG	10	Unmodified	_QVDFSVPEIG_					0	0	0			REV__ENSG00000167778|ENST00000301463|SPRYD3	REV__ENSG00000167778|ENST00000301463|SPRYD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7736206054688	2	545.774396	1089.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.848	1	17.848	17.348	18.348	0								0	0	0	0.37816	1	5111	5111		37.159	3.2375	1		+		31995	16216	22179	22253	32393	32393					-0.006945710018726459
QVDGLNIIR	9	Unmodified	_QVDGLNIIR_					0	0	0		tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2984008789062	2	514.298373	1026.58219	1.3568	0.00069779	-1.8068	-0.00092925	-0.45004	-0.00023146	514.2975900775664	19.896	0.42087	19.896	19.659	20.079	0					16	8	3	0	0	0	0.063823	1	6362	6362		90.37	16.205	1	795120			31996	22709	22180	22254	32394	32394					0.06996547708831713
QVDGVFVALP	10	Unmodified	_QVDGVFVALP_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7879638671875	2	522.78985	1043.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.429	1	24.429	23.929	24.929	0								0	0	0	0.3428	1	7477	7477		44.117	5.3107	1				31997	11803	22181	22255	32395	32395					0.04510627103036313
QVDKMIKVL	9	Unmodified	_QVDKMIKVL_					0	0	0			REV__ENST00000459993.5_1_3:56657067-56667992:-|nuORF	REV__ENST00000459993.5_1_3:56657067-56667992:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3208618164062	2	537.323002	1072.63145	0.74738	0.00040159	-3.4169	-0.001836	-2.6695	-0.0014344	537.8232360950697	29.065	0.18849	29.065	28.971	29.16	0					11	7	2	0	0	0	0.44593	1	9143	9143		37.812	3.8899	1	61709	+		31998	15941	22182	22256	32396	32396					0.09804119673458445
QVDPNFYSK	9	Unmodified	_QVDPNFYSK_					0	0	0		nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2677612304688	2	549.266739	1096.51892	1.5912	0.000874	-0.49806	-0.00027357	1.0932	0.00060044	549.2666765416781	29.096	0.17978	29.096	29.044	29.224	0					14	6	3	0	0	0	0.24334	1	9156	9156		56.434	16.376	1	186130			31999	6615	22183	22257	32397	32397					-0.025474377990576613
QVDPNFYSK	9	Unmodified	_QVDPNFYSK_					0	0	0		nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2676391601562	2	549.266739	1096.51892	1.841	0.0010112	-0.42075	-0.0002311	1.4203	0.00078012	549.2664852686712	29.369	0.33809	29.369	29.245	29.584	0					19	8	3	0	0	0	0.13726	1	10470	10470		70.816	70.816	1	1024900			32000	6615	22183	22257	32398	32398					-0.025474377990576613
QVDPNFYSK	9	Unmodified	_QVDPNFYSK_					0	0	0		nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2670288085938	2	549.266739	1096.51892	1.158	0.00063604	0.032081	1.7621E-05	1.1901	0.00065366	549.2666421856222	29.145	0.26432	29.145	29.086	29.351	0					14	7	3	0	0	0	0.53064	1	9760	9760		29.17	0.020503	1	245360			32001	6615	22183	22257	32399	32399					-0.025474377990576613
QVDPNFYSK	9	Unmodified	_QVDPNFYSK_					0	0	0		nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	nc|ENSG00000176623|Q96DB5-2|RMDN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2672119140625	2	549.266739	1096.51892	1.8367	0.0010089	-0.82569	-0.00045352	1.011	0.00055533	549.26628487103	29.299	0.60791	29.299	29.19	29.798	0					24	12	3	0	0	0	0.095583	1	10731	10731		80.455	31.013	1	1262200			32002	6615	22183	22257	32400	32400					-0.025474377990576613
QVEAVLTELRP	11	Unmodified	_QVEAVLTELRP_					0	0	0			REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	627.8571166992188	2	627.856252	1253.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.607	1	41.607	41.107	42.107	0								0	0	0	0.36092	1	16561	16561		43.651	3.5926	1		+		32003	14180	22184	22258	32401	32401					0.08125026769016586
QVEEIFNLK	9	Unmodified	_QVEEIFNLK_					0	0	0		ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.307373046875	2	560.305864	1118.59717	0.64487	0.00036132	1.2251	0.00068641	1.8699	0.0010477	560.3067681188088	42.05	0.20339	42.05	41.96	42.163	0					15	9	2	0	0	0	0.36135	1	16515	16515		45.972	6.7194	1	146190			32004	8059	22185	22259	32402	32402					0.04261994786179457
QVEEIFNLK	9	Unmodified	_QVEEIFNLK_					0	0	0		ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.306884765625	2	560.305864	1118.59717	1.3287	0.00074446	0.48837	0.00027363	1.817	0.0010181	560.3061209405759	42.028	0.27193	42.028	41.926	42.198	0					17	7	3	0	0	0	0.10821	1	16729	16729		90.601	13.283	1	320940			32005	8059	22185	22259	32403	32403					0.04261994786179457
QVEEYKLR	8	Unmodified	_QVEEYKLR_					0	0	0		ENST00000471887.1_1_7:18557286-18557502:+|nuORF	ENST00000471887.1_1_7:18557286-18557502:+|nuORF	ENST00000471887.1_1_7:18557286-18557502:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7926025390625	2	532.790381	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.076	1	13.076	12.576	13.576	0								0	0	0	1.7419	1	2602	2602		45.952	0	1				32006	9860	22186	22260	32404	32404					0.036968414719467546
QVEGKNPVT	9	Unmodified	_QVEGKNPVT_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1;ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2610168457031	2	486.261456	970.50836	-0.68384	-0.00033253	-0.44201	-0.00021493	-1.1259	-0.00054746	486.26123322424434	21.349	0.21746	21.349	21.24	21.458	0					6	4	2	0	0	0	0.40353	1	7082	7082		41.427	0.64845	1	95871			32007	2416	22187	22261	32405	32405					0.021925795465108422
QVEHENVAR	9	Unmodified	_QVEHENVAR_					0	0	0		ENST00000426627.1_1_13:88543904-88544189:-|nuORF	ENST00000426627.1_1_13:88543904-88544189:-|nuORF	ENST00000426627.1_1_13:88543904-88544189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2740478515625	2	541.272887	1080.53122	2.0654	0.0011179	0.12403	6.7134E-05	2.1894	0.0011851	541.2729016334858	17.923	0.45939	17.923	17.666	18.125	0					23	9	4	0	0	0	0.17854	1	5274	5274		64.207	3.2353	1	1492300			32008	9449	22188	22262	32406	32406					-0.005824013360097524
QVFEGHTHY	9	Unmodified	_QVFEGHTHY_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2572021484375	2	559.256705	1116.49886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.24	1	23.24	22.74	23.74	0								0	0	0	0.05454	1	7666	7666		84.916	40.538	1				32009	7015	22189	22263	32407	32407					-0.05473188738983481
QVFKCELKK	9	Unmodified	_QVFKCELKK_					0	0	0			REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.82177734375	2	561.820627	1121.6267	3.4694	0.0019492	-1.0833	-0.0006086	2.3861	0.0013406	561.8199923206741	14.885	0.16711	14.885	14.828	14.995	0					6	3	2	0	0	0	0.16806	1	3819	3819		65.465	10.689	1	1380500	+		32010	17311	22190	22264	32408	32408					0.07075235530669488
QVFKLGLAK	9	Unmodified	_QVFKLGLAK_					0	0	0		ENST00000498085.1_1_19:50222822-50223059:-|nuORF;ENSG00000170889|ENST00000302907|RPS9	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3182678222656	2	502.318577	1002.6226	1.1485	0.0005769	-1.4281	-0.00071737	-0.27965	-0.00014047	502.3178159376294	32.008	0.21761	32.008	31.902	32.119	0					11	4	3	0	0	0	0.30841	1	12036	12036		42.396	11.892	1	1193400			32011	6265	22191	22265	32409	32409					0.12139514099260396
QVFKLGLAK	9	Unmodified	_QVFKLGLAK_					0	0	0		ENST00000498085.1_1_19:50222822-50223059:-|nuORF;ENSG00000170889|ENST00000302907|RPS9	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.21478271484375	3	335.21481	1002.6226	3.0127	0.0010099	-2.4475	-0.00082043	0.56517	0.00018945	335.21408397774013	32.042	0.31784	32.042	31.935	32.253	0					14	6	3	0	0	0	0.42902	1	12054	12054		39.253	0	1	937030			32012	6265	22191	22265	32410	32410					0.12139514099260396
QVFKLLTSLAL	11	Unmodified	_QVFKLLTSLAL_					0	0	0			REV__NOC4L|p.A121T|1|0.23|ENSG00000184967|chr12:132147296-132147296|G/A|missense_variant	REV__NOC4L|p.A121T|1|0.23|ENSG00000184967|chr12:132147296-132147296|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.8823852539062	2	616.884281	1231.75401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.748	1	14.748	14.248	15.248	0								0	0	0	0.15	1	3660	3660		60.118	3.486	1		+		32013	21295	22192	22266	32411	32411					0.14740279676516366
QVFKTHKK	8	Unmodified	_QVFKTHKK_					0	0	0		nc|ENSG00000170364|Q53H47-2|SETMAR;nc|ENSG00000170364|Q53H47-3|SETMAR;ENSG00000170364|ENST00000358065|SETMAR	nc|ENSG00000170364|Q53H47-2|SETMAR	nc|ENSG00000170364|Q53H47-2|SETMAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.3034973144531	2	508.306001	1014.59745	-1.894	-0.00096275	-1.6678	-0.00084777	-3.5619	-0.0018105	508.30476533305534	14.212	0.14971	14.212	14.162	14.312	0					13	7	2	0	0	0	0.78142	1	2972	2972		13.775	0	1	75298			32014	6230	22193	22267	32412	32412					0.09073459296701003
QVFLVEIE	8	Unmodified	_QVFLVEIE_					0	0	0		NEURL2|p.C195Afs*63|1|0.37|ENSG00000124257|chr20:45890409-45890409|A/-|frameshift_variant;ENSG00000124257|ENST00000372518|NEURL2	NEURL2|p.C195Afs*63|1|0.37|ENSG00000124257|chr20:45890409-45890409|A/-|frameshift_variant	NEURL2|p.C195Afs*63|1|0.37|ENSG00000124257|chr20:45890409-45890409|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7715148925781	2	488.771126	975.527698	0.78776	0.00038504	-0.223	-0.000109	0.56476	0.00027604	488.77094857898123	12.181	0.15767	12.181	12.091	12.249	0					6	4	2	0	0	0	0.63077	1	2544	2544		33.516	9.3128	1	127280			32015	3363	22194	22268	32413	32413					0.03895535837432362
QVFSLTHN	8	Unmodified	_QVFSLTHN_					0	0	0			REV__nc|ENSG00000198825|Q9Y2H2-2|INPP5F	REV__nc|ENSG00000198825|Q9Y2H2-2|INPP5F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2444152832031	2	473.243067	944.47158	0.24971	0.00011817	2.0698	0.0009795	2.3195	0.0010977	473.24428986059917	20.705	0.33773	20.705	20.478	20.816	0					20	7	3	0	0	0	0.52345	1	6483	6483		57.811	4.4598	1	745960	+		32016	17437	22195	22269	32414	32414					-0.0028767227938715223
QVFTLAAK	8	Unmodified	_QVFTLAAK_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2607727050781	2	439.260728	876.506903	-0.37033	-0.00016267	0.42236	0.00018553	0.052033	2.2856E-05	439.2608997225371	32.299	0.54178	32.299	32.167	32.709	0					29	13	4	0	0	0	0.3961	1	11830	11830		71.296	2.811	1	2435800	+		32017	15590	22196	22270	32415	32415					0.06370990248410635
QVGAKIFLK	9	Unmodified	_QVGAKIFLK_					0	0	0		ENST00000580713.1_1_17:18212093-18218098:-|nuORF	ENST00000580713.1_1_17:18212093-18218098:-|nuORF	ENST00000580713.1_1_17:18212093-18218098:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.2150573730469	3	335.21481	1002.6226	-0.66853	-0.0002241	0.4642	0.00015561	-0.20433	-6.8493E-05	335.54906928859515	31.875	0.23153	31.875	31.762	31.994	0					19	9	3	0	0	0	0.5741	1	10586	10586		24.519	0.31644	1	113940			32018	10869	22197	22271	32416	32416					0.12139514099271764
QVGLKGQPAII	11	Unmodified	_QVGLKGQPAII_					0	0	0		ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENST00000437039.1_1_2:179319678-179320041:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	375.23272705078125	3	375.232641	1122.67609	0.30227	0.00011342	0.023685	8.8876E-06	0.32596	0.00012231	375.23273156780124	14.652	0.16751	14.652	14.566	14.734	0					6	4	2	0	0	0	0.64626	1	3626	3626		32.751	1.2207	1	342200			32019	9537	22198	22272	32417	32417					0.11966266811123205
QVGTVGVPL	9	Unmodified	_QVGTVGVPL_					0	0	0		ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.25775146484375	2	435.258185	868.501818	0.67237	0.00029265	-1.2629	-0.0005497	-0.59055	-0.00025704	435.257614572935	28.81	0.21597	28.81	28.686	28.902	0					9	5	3	0	0	0	0.55379	1	10233	10233		26.693	2.4902	1	165980			32020	9695	22199	22273	32418	32418					0.06230686385822537
QVGVPRFSK	9	Unmodified	_QVGVPRFSK_					0	0	0			REV__ENST00000377298.8_1_1:9790409-9790562:-|nuORF	REV__ENST00000377298.8_1_1:9790409-9790562:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2955322265625	2	509.295633	1016.57671	-0.40578	-0.00020666	0.59368	0.00030236	0.1879	9.5695E-05	509.29585791583224	23.637	0.26621	23.637	23.479	23.745	0					13	5	3	0	0	0	0.28504	1	8156	8156		52.937	8.5595	1	478260	+		32021	18730	22200	22274	32419	32419					0.06908868917037125
QVGVQYWSY	9	Unmodified	_QVGVQYWSY_					0	0	0			REV__nc|ENSG00000138653|Q9H3R1-2|NDST4	REV__nc|ENSG00000138653|Q9H3R1-2|NDST4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.271240234375	2	565.269281	1128.52401	1.7163	0.00097019	1.4407	0.00081441	3.1571	0.0017846	565.270243546365	35.873	0.65847	35.873	35.721	36.379	0					34	13	4	0	0	0	0.13519	1	13900	13900		71.296	5.4925	1	1640200	+		32022	21038	22201	22275	32420	32420					-0.03511133936422084
QVGVQYWSY	9	Unmodified	_QVGVQYWSY_					0	0	0			REV__nc|ENSG00000138653|Q9H3R1-2|NDST4	REV__nc|ENSG00000138653|Q9H3R1-2|NDST4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.2716674804688	2	565.269281	1128.52401	3.4711	0.0019621	0.089811	5.0768E-05	3.5609	0.0020129	565.2693693398808	35.906	0.51252	35.906	35.654	36.166	0					30	10	4	0	0	0	0.099922	1	13892	13892		79.451	16.473	1	1497700	+		32023	21038	22201	22275	32421	32421					-0.03511133936422084
QVHNKYLSAY	10	Unmodified	_QVHNKYLSAY_					0	0	0			REV__WDFY4|p.D2244N|1|0.38|ENSG00000128815|chr10:48867331-48867331|G/A|missense_variant	REV__WDFY4|p.D2244N|1|0.38|ENSG00000128815|chr10:48867331-48867331|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	611.8148803710938	2	611.814387	1221.61422	0.16131	9.8689E-05	-0.091164	-5.5776E-05	0.070141	4.2913E-05	611.8143887570451	30.309	0.26274	30.309	30.186	30.449	0					14	9	2	0	0	0	0.71484	1	9645	9645		19.997	0	1	70937	+		32024	22286	22202	22276	32422	32422					0.012279153919962482
QVHNLLLTY	9	Unmodified	_QVHNLLLTY_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8096923828125	2	550.808574	1099.60259	0.56017	0.00030855	-0.011078	-6.1021E-06	0.54909	0.00030244	550.8086209933085	42.727	0.14043	42.727	42.688	42.828	0					9	6	2	0	0	0	0.15163	1	16170	16170		71.296	15.791	1	39459			32025	6244	22203	22277	32423	32423					0.05677718368656315
QVHNWKAG	8	Unmodified	_QVHNWKAG_					0	0	0		ENST00000271688.10_1_1:150938750-150939000:-|nuORF	ENST00000271688.10_1_1:150938750-150939000:-|nuORF	ENST00000271688.10_1_1:150938750-150939000:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.24285888671875	2	470.243401	938.472249	0.60993	0.00028681	-1.437	-0.00067575	-0.82709	-0.00038893	470.2427540583659	20.921	0.31442	20.921	20.764	21.078	0					10	6	2	0	0	0	0.64096	1	6869	6869		42.474	0.078325	1	962630			32026	8380	22204	22278	32424	32424					0.0005516716032616387
QVHVRSRSGGP	11	Unmodified	_QVHVRSRSGGP_					0	0	0			REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.3218383789062	2	590.320703	1178.62685	1.4894	0.0008792	1.0045	0.00059296	2.4938	0.0014722	590.3213036649722	40.168	0.34932	40.168	40.048	40.397	0					32	13	3	0	0	0	0.59078	1	15805	15805		42.864	10.909	1	544350	+		32027	18493	22205	22279	32425	32425					0.044683715748988106
QVHVRSRSGGP	11	Unmodified	_QVHVRSRSGGP_					0	0	0			REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.3229370117188	2	590.320703	1178.62685	3.1821	0.0018785	-0.3054	-0.00018028	2.8767	0.0016982	590.3205096955126	40.094	0.45127	40.094	39.987	40.439	0					30	10	4	0	0	0	0.59078	1	15882	15882		42.864	42.864	1	1284800	+		32028	18493	22205	22279	32426	32426					0.044683715748988106
QVIAGAVHK	9	Unmodified	_QVIAGAVHK_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.77679443359375	2	461.777077	921.5396	-0.7162	-0.00033072	0.11763	5.4317E-05	-0.59857	-0.00027641	461.77716424182023	18.556	0.26152	18.556	18.461	18.723	0					14	6	4	0	0	0	0.011031	1	5455	5455		138.83	28.488	1	2817500			32029	5845	22206	22280	32427	32427					0.0756919737127646
QVIAGAVHK	9	Unmodified	_QVIAGAVHK_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.77679443359375	2	461.777077	921.5396	0.72221	0.0003335	-1.2746	-0.0005886	-0.55243	-0.0002551	461.7765475087212	18.502	0.11816	18.502	18.443	18.561	0					6	2	3	0	0	0	0.023074	1	5705	5705		116.9	28.261	1	571740			32030	5845	22206	22280	32428	32428					0.0756919737127646
QVIAGAVHK	9	Unmodified	_QVIAGAVHK_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.77691650390625	2	461.777077	921.5396	-0.90731	-0.00041897	0.63878	0.00029498	-0.26852	-0.000124	461.7773871094385	18.536	0.16789	18.536	18.427	18.595	0					8	3	3	0	0	0	0.034359	1	5696	5696		104.75	19.387	1	877560			32031	5845	22206	22280	32429	32429					0.0756919737127646
QVIDGFFVK	9	Unmodified	_QVIDGFFVK_					0	0	0		ENSG00000172732|ENST00000308110|MUS81;ENST00000530928.5_1_11:65631499-65632379:+|nuORF	ENSG00000172732|ENST00000308110|MUS81	ENSG00000172732|ENST00000308110|MUS81	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7946166992188	2	526.792392	1051.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.761	1	43.761	43.261	44.261	0								0	0	0	0.27025	1	16477	16477		40.778	0	1				32032	6378	22207	22281	32430	32430					0.046509309656585174
QVIDGFFVK	9	Unmodified	_QVIDGFFVK_					0	0	0		ENSG00000172732|ENST00000308110|MUS81;ENST00000530928.5_1_11:65631499-65632379:+|nuORF	ENSG00000172732|ENST00000308110|MUS81	ENSG00000172732|ENST00000308110|MUS81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7919311523438	2	526.792392	1051.57023	0.63826	0.00033623	-0.021152	-1.1143E-05	0.61711	0.00032509	526.7919815644419	43.67	0.19386	43.67	43.562	43.756	0					12	5	3	0	0	0	0.19605	1	17463	17463		62.107	12.666	1	90272			32033	6378	22207	22281	32431	32431					0.046509309656585174
QVIDKAQK	8	Unmodified	_QVIDKAQK_					0	0	0			REV__nc|ENSG821|P63135|ERVK-7_pol;REV__nc|ENSG814|P63133|ERVK-8_pol	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2741394042969	2	465.274367	928.53418	0.68955	0.00032083	-1.2641	-0.00058817	-0.57458	-0.00026734	465.2737059257861	12.337	0.11977	12.337	12.269	12.388	0					8	4	3	0	0	0	0.32815	1	2603	2603		79.451	0	1	206090	+		32034	21269;21268	22208	22282	32432	32432					0.06705473788792915
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.3156433105469	2	492.316035	982.617516	0.48595	0.00023924	-0.21088	-0.00010382	0.27507	0.00013542	492.3161201808589	33.601	0.70128	33.601	33.469	34.17	0					51	18	5	0	0	0	0.0011148	2	12410	12410;12571		181.81	79.032	1	34853000			32035	8467	22209	22283	32433;32434	32433					0.12551210236642873
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.3163757324219	2	492.316035	982.617516	0.79092	0.00038938	-1.2393	-0.00061014	-0.4484	-0.00022076	492.31538241427	33.585	0.35629	33.585	33.497	33.854	0					22	9	5	0	0	0	0.13519	1	12424	12424		71.296	17.944	1	969790			32036	8467	22209	22283	32435	32435					0.12551210236642873
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.31585693359375	2	492.316035	982.617516	-0.057097	-2.811E-05	0.06876	3.3852E-05	0.011664	5.7421E-06	492.31617523503996	33.582	0.79304	33.582	33.448	34.241	0					62	19	6	0	0	0	0.0016726	1	12836	12836		176.41	66.291	1	28633000			32037	8467	22209	22283	32436	32436					0.12551210236642873
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.31573486328125	2	492.316035	982.617516	-0.58974	-0.00029034	0.039945	1.9666E-05	-0.5498	-0.00027067	492.31612050932455	33.558	0.71915	33.558	33.399	34.118	0					49	15	6	0	0	0	1.1519E-06	1	12753	12753		207.6	83.009	1	22762000			32038	8467	22209	22283	32437	32437					0.12551210236642873
QVIKEHATF	9	Unmodified	_QVIKEHATF_					0	0	0			REV__NUFIP1|p.D481Rfs*8|1|0.19|ENSG00000083635|chr13:44941253-44941254|-/T|frameshift_variant	REV__NUFIP1|p.D481Rfs*8|1|0.19|ENSG00000083635|chr13:44941253-44941254|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7948608398438	2	536.792924	1071.57129	1.8578	0.00099728	1.2807	0.00068749	3.1386	0.0016848	536.7938486839498	19.518	0.31326	19.518	19.412	19.726	0					16	6	3	0	0	0	0.14603	1	6220	6220		68.787	15.85	1	1787500	+		32039	13336	22210	22284	32438	32438					0.038371453345462214
QVIKYRTY	8	Unmodified	_QVIKYRTY_					0	0	0			REV__nc|ENSG00000136048|Q8N682-2|DRAM1	REV__nc|ENSG00000136048|Q8N682-2|DRAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.8046875	2	535.803291	1069.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.457	1	11.457	10.957	11.957	0								0	0	0	1.7419	1	2230	2230		37.159	6.6555	1		+		32040	14842	22211	22285	32439	32439					0.06001735714221468
QVILGSPAR	9	Unmodified	_QVILGSPAR_					0	0	0		nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENST00000573058.1_1_17:79225017-79225422:-|nuORF	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7820129394531	2	470.782359	939.550165	-0.54564	-0.00025688	-0.1558	-7.3349E-05	-0.70145	-0.00033023	470.7823263272005	19.799	0.47017	19.799	19.541	20.011	0					21	9	4	0	0	0	0.056004	1	6193	6193		93.143	14.879	1	3899200			32041	11602	22212	22286	32440	32440					0.0779718002570462
QVILLLKP	8	Unmodified	_QVILLLKP_					0	0	0		ENST00000519443.1_1_8:117778842-117782740:+|nuORF	ENST00000519443.1_1_8:117778842-117782740:+|nuORF	ENST00000519443.1_1_8:117778842-117782740:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.3177490234375	2	462.318046	922.621539	-0.94075	-0.00043493	1.4487	0.00066976	0.50794	0.00023483	462.3183702659685	41.707	0.15607	41.707	41.646	41.802	0					10	6	2	0	0	0	0.79882	1	16404	16404		19.36	0	1	66210			32042	10286	22213	22287	32441	32441					0.15713299730373365
QVILVQPYK	9	Unmodified	_QVILVQPYK_					0	0	0		ENST00000370801.7_1_1:78107309-78148295:-|nuORF;ENST00000370798.5_1_1:78107309-78149041:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.3289184570312	2	544.329142	1086.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.844	1	34.844	34.344	35.344	0								0	0	0	0.24724	1	13017	13017		44.117	0	1				32043	8959	22214	22288	32442	32442					0.10387479408109357
QVINNILE	8	Unmodified	_QVINNILE_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;ENSG00000100325|ENST00000307790|ASCC2;ENST00000487486.5_1_22:30188501-30200764:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.76580810546875	2	471.766374	941.518196	-0.59986	-0.00028299	-0.34927	-0.00016477	-0.94913	-0.00044777	471.7660626991245	26.964	0.30787	26.964	26.702	27.01	0					9	7	2	0	0	0	0.61938	1	9376	9376		45.952	1.8352	1	186840			32044	240	22215	22289	32443	32443					0.045097675518945834
QVIQTKGPK	9	Unmodified	_QVIQTKGPK_					0	0	0			REV__DENND6A|p.T245K|1|0.07|ENSG00000174839|chr3:57659146-57659146|G/T|missense_variant	REV__DENND6A|p.T245K|1|0.07|ENSG00000174839|chr3:57659146-57659146|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.8040771484375	2	499.803291	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.987	1	19.987	19.487	20.487	0								0	0	0	0.28996	1	5274	5274		37.159	3.6435	1		+		32045	12698	22216	22290	32444	32444					0.09313735714238192
QVISHEKPQ	9	Unmodified	_QVISHEKPQ_					0	0	0			REV__ENSG00000179165|ENST00000454782|PXT1	REV__ENSG00000179165|ENST00000454782|PXT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.288330078125	2	533.288005	1064.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.886	1	13.886	13.386	14.386	0								0	0	0	0.079836	1	3262	3262		70.816	2.0294	1		+		32046	16767	22217	22291	32445	32445					0.031759573291765264
QVISHEKPQ	9	Unmodified	_QVISHEKPQ_					0	0	0			REV__ENSG00000179165|ENST00000454782|PXT1	REV__ENSG00000179165|ENST00000454782|PXT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.288330078125	2	533.288005	1064.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.835	1	13.835	13.335	14.335	0								0	0	0	0.16368	1	3306	3306		58.23	10.27	1		+		32047	16767	22217	22291	32446	32446					0.031759573291765264
QVITETAKK	9	Unmodified	_QVITETAKK_					0	0	0		ENST00000474320.1_1_13:43597726-43652825:+|nuORF;ENSG00000120675|ENST00000379221|DNAJC15	ENST00000474320.1_1_13:43597726-43652825:+|nuORF	ENST00000474320.1_1_13:43597726-43652825:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3004150390625	2	509.300581	1016.58661	1.1679	0.00059483	-1.2842	-0.00065406	-0.11629	-5.9226E-05	509.29988605743034	16.422	0.16795	16.422	16.363	16.531	0					9	3	4	0	0	0	0.0076184	1	4702	4702		146.79	48.156	1	1425500			32048	3180	22218	22292	32447	32447					0.07898012131738597
QVITETAKK	9	Unmodified	_QVITETAKK_					0	0	0		ENST00000474320.1_1_13:43597726-43652825:+|nuORF;ENSG00000120675|ENST00000379221|DNAJC15	ENST00000474320.1_1_13:43597726-43652825:+|nuORF	ENST00000474320.1_1_13:43597726-43652825:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.3005676269531	2	509.300581	1016.58661	-1.8583	-0.00094643	1.7296	0.00088087	-0.12873	-6.5561E-05	509.301347340537	16.257	0.11323	16.257	16.182	16.296	0					6	3	2	0	0	0	0.42902	1	3807	3807		39.253	6.4404	1	309780			32049	3180	22218	22292	32448	32448					0.07898012131738597
QVIVQGVHE	9	Unmodified	_QVIVQGVHE_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000496513.1_9:42713885-42714077:+|nuORF;ENST00000468061.1_9:69204965-69229730:-|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000460896.1_9:42685444-42714533:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;nc|ENSG00000215126|Q5RIA9-2|ZNG1E;ENST00000486387.2_9:42689759-42714533:+|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.77691650390625	2	504.777274	1007.53999	-0.80585	-0.00040678	0.53141	0.00026824	-0.27444	-0.00013853	504.7775487303381	26.214	0.24315	26.214	26.113	26.356	0					15	7	3	0	0	0	0.35021	1	8218	8218		45.972	4.5456	1	217640			32050	4097	22219	22293	32449	32449					0.036525723004729116
QVKEILTR	8	Unmodified	_QVKEILTR_					0	0	0			REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.8028564453125	2	493.803291	985.59203	-0.62144	-0.00030687	0.49888	0.00024635	-0.12256	-6.0522E-05	493.80315940810743	21.848	0.11337	21.848	21.789	21.903	0					4	2	2	0	0	0	0.22389	1	7189	7189		127.46	1.6477	1	463290	+		32051	17811	22220	22294	32450	32450					0.09865735714220136
QVKGRRVV	8	Unmodified	_QVKGRRVV_					0	0	0		ENST00000485767.1_1_9:124072835-124073156:+|nuORF;CON__Q3SX14;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN	ENST00000485767.1_1_9:124072835-124073156:+|nuORF;ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.304443359375	2	471.303793	940.593033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.938	1	41.938	41.438	42.438	0								0	0	0	1.7419	1	14715	14715		25.45	4.5032	1			+	32052	4813;10010	22221	22295	32451	32451					0.12035994873792788
QVKIRPMT	8	Unmodified	_QVKIRPMT_					0	0	0			REV__CON__P50448	REV__CON__P50448	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.78564453125	2	486.786587	971.558621	-0.045062	-2.1936E-05	-2.6953	-0.001312	-2.7404	-0.001334	486.7853332065848	16.722	0.093744	16.722	16.665	16.759	0					5	3	2	0	0	0	0.54629	1	3857	3857		55.504	2.1528	1	80094	+	+	32053	12597	22222	22296	32452	32452					0.0717041067067612
QVKKNQRIS	9	Unmodified	_QVKKNQRIS_					0	0	0		ENSG00000249931|ENST00000512626|GOLGA8K;ENSG00000261247|ENST00000569052|GOLGA8T;ENSG00000261794|ENST00000566740|GOLGA8H	ENSG00000249931|ENST00000512626|GOLGA8K	ENSG00000249931|ENST00000512626|GOLGA8K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8323974609375	2	550.830372	1099.64619	3.7264	0.0020526	0.16104	8.8704E-05	3.8874	0.0021413	550.8304223579225	14.885	1.5056	14.885	14.777	16.283	0					61	30	3	0	0	0	0.037924	1	3813	3813		96.19	24.313	1	18857000			32054	7985	22223	22297	32453	32453					0.10035327865784893
QVKNEKKQ	8	Unmodified	_QVKNEKKQ_					0	0	0		DBF4|p.N25Kfs*11|2|0.39|ENSG00000006634|chr7:87878073-87878074|-/A|frameshift_variant	DBF4|p.N25Kfs*11|2|0.39|ENSG00000006634|chr7:87878073-87878074|-/A|frameshift_variant	DBF4|p.N25Kfs*11|2|0.39|ENSG00000006634|chr7:87878073-87878074|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2909851074219	2	501.290548	1000.56654	0.14702	7.37E-05	0.4494	0.00022528	0.59642	0.00029898	501.29090268936204	15.308	0.69102	15.308	15.13	15.821	0					61	24	5	0	0	0	0.51931	1	3550	3550		56.721	10.769	1	39750000			32055	741	22224	22298	32454	32454					0.06628261191792717
QVKQFADIQ	9	Unmodified	_QVKQFADIQ_					0	0	0		tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1;tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7927856445312	2	538.790381	1075.56621	1.9273	0.0010384	2.1194	0.0011419	4.0467	0.0021803	538.7913873478938	25.492	0.4647	25.492	25.188	25.653	0					16	9	3	0	0	0	0.11898	1	9048	9048		75.043	12.936	1	529920			32056	23038	22225	22299	32455	32455					0.03144841471953441
QVKQLQQL	8	Unmodified	_QVKQLQQL_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.297119140625	2	492.795466	983.57638	-0.15957	-7.8636E-05	0.024486	1.2066E-05	-0.13509	-6.657E-05	492.79545357250527	31.957	0.23351	31.957	31.847	32.08	0					14	9	2	0	0	0	0.34985	1	10283	10283		76.847	3.9674	1	232250	+		32057	15134	22226	22300	32456	32456					0.08393449197183145
QVKTETAGP	9	Unmodified	_QVKTETAGP_					0	0	0		nc|ENSG00000100146|P56693|SOX10;ENSG00000100146|ENST00000396884|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7476806640625	2	465.748182	929.481811	-0.1368	-6.3714E-05	-0.20464	-9.5309E-05	-0.34143	-0.00015902	465.74800663190723	20.238	0.2682	20.238	20.128	20.396	0					7	5	2	0	0	0	0.33044	1	6543	6543		47.657	5.2612	1	137310			32058	1978	22227	22301	32457	32457					0.014248906551870277
QVLAKLAKR	9	Unmodified	_QVLAKLAKR_					0	0	0			REV__ENST00000419303.5_1_22:22348995-22398182:-|nuORF	REV__ENST00000419303.5_1_22:22348995-22398182:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.8975830078125	3	342.897593	1025.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.783	1	18.783	18.283	19.283	0								0	0	0	0.3245	1	5827	5827		30.318	0	1		+		32059	19059	22228	22302	32458	32458					0.1591400773913847
QVLATTVGK	9	Unmodified	_QVLATTVGK_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1;nc|ENSG00000121057|Q92667-2|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.77642822265625	2	458.776742	915.538931	0.68349	0.00031357	-0.87145	-0.0003998	-0.18795	-8.6229E-05	458.77643420081563	23.839	0.08176	23.839	23.761	23.842	0					5	3	2	0	0	0	0.42902	1	6949	6949		39.253	5.7372	1	59039			32060	3209	22229	22303	32459	32459					0.07778357931556457
QVLATTVGK	9	Unmodified	_QVLATTVGK_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1;nc|ENSG00000121057|Q92667-2|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7769470214844	2	458.776742	915.538931	0.1736	7.9644E-05	0.52617	0.0002414	0.69977	0.00032104	458.7769359020211	24.152	0.14154	24.152	24.063	24.204	0					6	3	2	0	0	0	0.44593	1	8084	8084		37.812	2.1932	1	224580			32061	3209	22229	22303	32460	32460					0.07778357931556457
QVLGLHKQ	8	Unmodified	_QVLGLHKQ_					0	0	0		nc|ENSG00000148482|Q504Y0-5|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12	nc|ENSG00000148482|Q504Y0-5|SLC39A12	nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7768249511719	2	461.777077	921.5396	-0.44529	-0.00020562	-0.26174	-0.00012087	-0.70703	-0.00032649	461.7769277051476	18.264	0.13297	18.264	18.178	18.311	0					12	5	3	0	0	0	0.29152	1	4511	4511		85.359	0.44396	1	444300			32062	4835	22230	22304	32461	32461					0.0756919737127646
QVLGPEKQ	8	Unmodified	_QVLGPEKQ_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.75299072265625	2	449.753267	897.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.163	1	21.163	20.663	21.663	0								0	0	0	1.7419	1	5785	5785		31.955	0	1				32063	2365	22231	22305	32462	32462					0.03913498380427427
QVLGRSLPAPQ	11	Unmodified	_QVLGRSLPAPQ_					0	0	0			REV__nc|ENSG00000151914|Q03001-13|DST	REV__nc|ENSG00000151914|Q03001-13|DST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.227783203125	3	389.227779	1164.66151	-2.1913	-0.00085292	2.3401	0.00091085	0.14884	5.7933E-05	389.2287102480265	22.775	0.14281	22.775	22.682	22.825	0					6	3	2	0	0	0	0.60833	1	6850	6850		36.318	1.1394	1	82849	+		32064	19954	22232	22306	32463	32463					0.08576194662964554
QVLQTYVAF	9	Unmodified	_QVLQTYVAF_					0	0	0		nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141;CCDC141|p.M954Cfs*4|1|0.31|ENSG00000163492|chr2:178856262-178856262|T/-|frameshift_variant;CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant	nc|ENSG00000163492|Q6ZP82-1|CCDC141	nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7904663085938	2	534.78985	1067.56515	0.56511	0.00030221	-0.073449	-3.928E-05	0.49166	0.00026293	534.7898814748663	30.257	0.16369	30.257	30.159	30.323	0					10	5	3	0	0	0	0.2873	1	9617	9617		51.335	1.8939	1	137550			32065	5564	22233	22307	32464	32464					0.034066271030496864
QVLSAATIVAK	11	Unmodified	_QVLSAATIVAK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8384399414062	2	550.837331	1099.66011	2.9674	0.0016345	-2.2275	-0.001227	0.73991	0.00040757	550.8358355974291	33.837	0.1482	33.837	33.763	33.911	0					8	5	2	0	0	0	0.29287	1	11043	11043		63.426	16.97	1	29085			32066	4144;6333	22234	22308	32465	32465					0.11426560574227551
QVLSAATIVAK	11	Unmodified	_QVLSAATIVAK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8380126953125	2	550.837331	1099.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.104	1	34.104	33.604	34.604	0								0	0	0	0.0018453	1	12674	12674		117.53	50.032	1				32067	4144;6333	22234	22308	32466	32466					0.11426560574227551
QVLSVLYVP	9	Unmodified	_QVLSVLYVP_					0	0	0			REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3011779785156	2	509.302593	1016.59063	-0.50842	-0.00025894	-1.6349	-0.00083266	-2.1433	-0.0010916	509.3017933037139	16.217	0.11787	16.217	16.13	16.248	0					10	4	3	0	0	0	0.33044	1	3840	3840		40.573	0	1	213910	+		32068	18167	22235	22309	32467	32467					0.08300101625468415
QVLTSKAAI	9	Unmodified	_QVLTSKAAI_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.78424072265625	2	465.784567	929.554582	-0.1366	-6.3625E-05	-0.64411	-0.00030001	-0.7807	-0.00036364	465.78433247177077	19.733	0.2682	19.733	19.625	19.894	0					7	5	2	0	0	0	0.19605	1	6301	6301		62.107	7.3311	1	262060			32069	3441	22236	22310	32468	32468					0.08698644448600135
QVLVAARSGG	10	Unmodified	_QVLVAARSGG_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2777099609375	2	479.277441	956.540328	-0.11412	-5.4697E-05	0.69451	0.00033286	0.58038	0.00027816	479.27780769692805	48.266	0.61845	48.266	47.989	48.608	0					71	39	2	0	0	0	0.66185	1	15237	15237		26.693	2.4902	1	122170	+		32070	17481	22237	22311	32469	32469					0.060319920203255606
QVLVVNGGE	9	Unmodified	_QVLVVNGGE_					0	0	0		RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant;RB1CC1|p.L547Ffs*7|1|0.05|ENSG00000023287|chr8:52660644-52660645|-/A|frameshift_variant;RB1CC1|p.N872Kfs*2|1|0.31|ENSG00000023287|chr8:52657213-52657214|-/T|frameshift_variant;RB1CC1|p.L965Afs*4|1|0.35|ENSG00000023287|chr8:52656937-52656938|-/T|frameshift_variant;RB1CC1|p.K964Sfs*13|1|0.31|ENSG00000023287|chr8:52656938-52656938|T/-|frameshift_variant;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant	RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7503662109375	2	457.750724	913.486896	-0.63543	-0.00029087	0.4924	0.0002254	-0.14303	-6.5472E-05	457.75086167188624	14.558	1.0202	14.558	14.003	15.023	0					62	25	6	0	0	0	0.1115	1	3474	3474		76.774	9.2805	1	2351100			32071	1119	22238	22312	32470	32470					0.02669194517818596
QVMKTVLGK	9	Unmodified	_QVMKTVLGK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.3019104003906	2	502.30207	1002.58959	0.054442	2.7347E-05	-0.4871	-0.00024467	-0.43266	-0.00021732	502.3018747592803	23.62	0.21536	23.62	23.513	23.728	0					10	4	3	0	0	0	0.16806	1	8173	8173		65.465	17.808	1	833540			32072	10722	22239	22313	32471	32471					0.08839563984918186
QVMKTVLGK	9	Unmodified	_QVMKTVLGK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.302001953125	2	502.30207	1002.58959	-0.52466	-0.00026354	0.39098	0.00019639	-0.13368	-6.7146E-05	502.30225329936115	23.593	0.31255	23.593	23.484	23.796	0					9	6	2	0	0	0	0.085655	1	8030	8030		82.75	26.029	1	963070			32073	10722	22239	22313	32472	32472					0.08839563984918186
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2835998535156	2	502.283877	1002.5532	0.50743	0.00025487	-1.0512	-0.00052801	-0.54378	-0.00027313	502.2834604543994	32.782	0.24997	32.782	32.699	32.949	0					21	9	3	0	0	0	0.098791	1	10605	10605		79.713	20.931	1	604920			32074	8575	22240	22314	32473	32473					0.052026870882059484
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2834777832031	2	502.283877	1002.5532	0.70779	0.00035551	-1.694	-0.00085089	-0.98625	-0.00049538	502.28346580118773	33.06	0.56267	33.06	32.709	33.272	0					29	15	3	0	0	0	0.0097668	1	12185	12185		141.52	40.268	1	2011200			32075	8575	22240	22314	32474	32474					0.052026870882059484
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.28375244140625	2	502.283877	1002.5532	0.054162	2.7205E-05	-1.5457	-0.0007764	-1.4916	-0.0007492	502.28360330461084	33.028	0.59516	33.028	32.688	33.283	0					28	14	4	0	0	0	0.0049871	1	12590	12590		158.07	56.474	1	1788200			32076	8575	22240	22314	32475	32475					0.052026870882059484
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.28411865234375	2	502.283877	1002.5532	0.97359	0.00048902	-1.269	-0.0006374	-0.29543	-0.00014839	502.2833379848933	33.012	0.19175	33.012	32.917	33.109	0					7	4	2	0	0	0	0.085655	1	12612	12612		82.75	3.0379	1	445960			32077	8575	22240	22314	32476	32476					0.052026870882059484
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2835998535156	2	502.283877	1002.5532	-0.27107	-0.00013615	0.096296	4.8368E-05	-0.17477	-8.7784E-05	502.28393101540894	32.829	0.28606	32.829	32.703	32.99	0					15	7	3	0	0	0	0.035062	1	11443	11443		104.06	32.179	1	282720			32078	8575	22240	22314	32477	32477					0.052026870882059484
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.28289794921875	2	502.283877	1002.5532	0.13797	6.9298E-05	-0.1959	-9.84E-05	-0.057939	-2.9102E-05	502.283846530702	32.812	0.24664	32.812	32.727	32.974	0					15	6	3	0	0	0	0.1424	1	11439	11439		69.628	14.851	1	372850			32079	8575	22240	22314	32478	32478					0.052026870882059484
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.28369140625	2	502.283877	1002.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.998	1	32.998	32.498	33.498	0								0	0	0	0.01286	1	12495	12495		167.23	48.486	1				32080	8575	22240	22314	32479	32479					0.052026870882059484
QVMSLGLQK	9	Unmodified	_QVMSLGLQK_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2838439941406	2	502.283877	1002.5532	1.1453	0.00057529	-1.6759	-0.00084178	-0.53055	-0.00026649	502.2830819381493	33.011	0.24173	33.011	32.909	33.151	0					9	5	3	0	0	0	0.0059092	1	12492	12492		154.12	41.707	1	2113100			32081	8575	22240	22314	32480	32480					0.052026870882059484
QVNDARPQSC	10	Unmodified	_QVNDARPQSC_					0	0	0			REV__ENST00000375433.3_1_1:17747277-17749232:-|nuORF	REV__ENST00000375433.3_1_1:17747277-17749232:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.25732421875	2	559.256379	1116.49821	-0.10714	-5.9918E-05	1.0528	0.0005888	0.94569	0.00052888	559.2570305965642	23.187	0.36692	23.187	23.078	23.445	0					15	7	3	0	0	0	0.50881	1	7965	7965		44.377	8.7589	1	250840	+		32082	18707	22241	22315	32481	32481					-0.055383514503546394
QVNDLFSRK	9	Unmodified	_QVNDLFSRK_					0	0	0		ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;GTF2IRD2|p.F606Sfs*8|1|0.44|ENSG00000196275|chr7:74797697-74797697|G/-|frameshift_variant;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.8015747070312	2	553.80128	1105.58801	0.61495	0.00034056	0.27792	0.00015391	0.89287	0.00049447	553.8012154198442	27.205	0.17935	27.205	27.114	27.293	0					9	4	3	0	0	0	0.076532	1	9466	9466		85.862	21.655	1	658960			32083	8059	22242	22316	32482	32482					0.03943646220500341
QVNDLFSRK	9	Unmodified	_QVNDLFSRK_					0	0	0		ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;GTF2IRD2|p.F606Sfs*8|1|0.44|ENSG00000196275|chr7:74797697-74797697|G/-|frameshift_variant;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8016357421875	2	553.80128	1105.58801	0.00498	2.7579E-06	0.89761	0.0004971	0.90259	0.00049986	553.8016351401708	27.195	0.26498	27.195	27.039	27.304	0					8	5	3	0	0	0	0.13726	1	9837	9837		70.816	14.382	1	401180			32084	8059	22242	22316	32483	32483					0.03943646220500341
QVNGGTVAEK	10	Unmodified	_QVNGGTVAEK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31248141-31248948:+|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7642822265625	2	501.764363	1001.51417	0.60513	0.00030363	-0.28324	-0.00014212	0.32189	0.00016151	501.7640563099193	16.554	0.10303	16.554	16.504	16.608	0					4	2	2	0	0	0	0.22691	1	4520	4520		76.17	21.393	1	326140			32085	2002	22243	22317	32484	32484					0.013476780581868297
QVNGGTVAEK	10	Unmodified	_QVNGGTVAEK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31248141-31248948:+|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7650451660156	2	501.764363	1001.51417	3.5155	0.001764	-3.3716	-0.0016917	0.14396	7.2235E-05	501.7623621866193	16.275	0.092867	16.275	16.248	16.34	0					5	3	2	0	0	0	0.536	1	3880	3880		41.427	3.6151	1	48462			32086	2002	22243	22317	32485	32485					0.013476780581868297
QVNGGTVAEK	10	Unmodified	_QVNGGTVAEK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31248141-31248948:+|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7639465332031	2	501.764363	1001.51417	0.040254	2.0198E-05	-0.57427	-0.00028815	-0.53402	-0.00026795	501.764044935688	16.489	0.11636	16.489	16.43	16.547	0					4	2	2	0	0	0	0.026898	1	4733	4733		120.31	10.186	1	406400			32087	2002	22243	22317	32486	32486					0.013476780581868297
QVNGGTVAEK	10	Unmodified	_QVNGGTVAEK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31248141-31248948:+|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7648010253906	2	501.764363	1001.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.335	1	16.335	15.835	16.835	0								0	0	0	0.328	1	3851	3851		46.457	3.5925	1				32088	2002	22243	22317	32487	32487					0.013476780581868297
QVNITVQK	8	Unmodified	_QVNITVQK_					0	0	0		HACD3|p.Q75K|1|0.24|ENSG00000074696|chr15:65556757-65556757|C/A|missense_variant;ENSG00000074696|ENST00000261875|HACD3	HACD3|p.Q75K|1|0.24|ENSG00000074696|chr15:65556757-65556757|C/A|missense_variant	HACD3|p.Q75K|1|0.24|ENSG00000074696|chr15:65556757-65556757|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.274169921875	2	465.274367	928.53418	0.67784	0.00031538	-1.1144	-0.00051848	-0.43651	-0.0002031	465.27384665048	12.345	0.21787	12.345	12.265	12.483	0					10	5	3	0	0	0	0.37144	1	2764	2764		74.255	4.6274	1	1965500			32089	1528	22244	22318	32488	32488					0.06705473788804284
QVNSLDLKK	9	Unmodified	_QVNSLDLKK_					0	0	0			REV__nc|ENSG00000186868|P10636-6|MAPT	REV__nc|ENSG00000186868|P10636-6|MAPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8074951171875	2	522.806031	1043.59751	1.5243	0.00079694	0.060539	3.165E-05	1.5849	0.00082859	522.8061214242628	26.064	0.14108	26.064	25.979	26.12	0					8	5	2	0	0	0	0.41113	1	7860	7860		40.778	3.7497	1	63928	+		32090	17093	22245	22319	32489	32489					0.07745414506052839
QVPNATTPPA	10	Unmodified	_QVPNATTPPA_					0	0	0		ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.26080322265625	2	498.261456	994.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.073	1	22.073	21.573	22.573	0								0	0	0	0.4162	1	6513	6513		25.574	0.12388	1				32091	5413	22246	22320	32490	32490					0.01088579546501478
QVPRTRHH	8	Unmodified	_QVPRTRHH_					0	0	0		ENST00000473661.5_1_3:9867594-9876502:+|nuORF	ENST00000473661.5_1_3:9867594-9876502:+|nuORF	ENST00000473661.5_1_3:9867594-9876502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7877807617188	2	515.786299	1029.55804	0.17315	8.9307E-05	2.331	0.0012023	2.5042	0.0012916	515.7876507657224	16.9	0.16071	16.9	16.844	17.005	0					7	3	3	0	0	0	0.51384	1	4787	4787		47.916	0	1	230450			32092	9878	22247	22321	32491	32491					0.04444752065865032
QVPSSPSLLP	10	Unmodified	_QVPSSPSLLP_					0	0	0		WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant	WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant	WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.287109375	2	512.787307	1023.56006	1.4381	0.00073744	-1.9983	-0.0010247	-0.56021	-0.00028727	512.7869397085028	37.927	0.86663	37.927	37.4	38.267	0					58	18	5	0	0	0	0.52707	1	14724	14724		42.396	5.9494	1	3846900			32093	23118	22248	22322	32492	32492					0.049223232404415285
QVPTIPQDT	9	Unmodified	_QVPTIPQDT_					0	0	0		SGOL1|p.I161V|1|0.08|ENSG00000129810|chr3:20175050-20175050|T/C|missense_variant	SGOL1|p.I161V|1|0.08|ENSG00000129810|chr3:20175050-20175050|T/C|missense_variant	SGOL1|p.I161V|1|0.08|ENSG00000129810|chr3:20175050-20175050|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.76129150390625	2	499.761289	997.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.324	1	22.324	21.824	22.824	0								0	0	0	0.29774	1	7233	7233		35.618	0	1				32094	22389	22249	22323	32493	32493					0.009171598266561887
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7712707519531	2	495.771991	989.529429	0.054256	2.6899E-05	-0.33876	-0.00016795	-0.2845	-0.00014105	495.771826247833	23.479	0.29386	23.479	23.372	23.665	0					32	10	4	0	0	0	0.027316	1	6786	6786		111.65	40.353	1	2705400			32095	3994	22250	22324	32494	32494					0.034245896460333825
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7716064453125	2	495.771991	989.529429	-0.037103	-1.8395E-05	0.38813	0.00019243	0.35103	0.00017403	495.77231530185713	23.72	0.71623	23.72	23.562	24.278	0					34	14	4	0	0	0	0.011031	1	8196	8196		138.83	39.451	1	21925000			32096	3994	22250	22324	32495	32495					0.034245896460333825
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7718505859375	2	495.771991	989.529429	0.041304	2.0477E-05	-0.39337	-0.00019502	-0.35207	-0.00017454	495.77179388266165	23.582	0.29247	23.582	23.446	23.738	0					19	7	4	0	0	0	0.0051889	1	7208	7208		157.21	66.432	1	2406400			32097	3994	22250	22324	32496	32496					0.034245896460333825
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7720642089844	2	495.771991	989.529429	0.11299	5.6018E-05	-0.34107	-0.00016909	-0.22808	-0.00011308	495.77185345313904	23.565	0.2105	23.565	23.474	23.685	0					12	5	4	0	0	0	0.05357	1	7206	7206		94.006	28.203	1	381090			32098	3994	22250	22324	32497	32497					0.034245896460333825
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7725524902344	2	495.771991	989.529429	-0.67201	-0.00033317	0.65747	0.00032596	-0.014544	-7.2105E-06	495.77245138822116	23.692	0.56269	23.692	23.585	24.147	0					31	11	5	0	0	0	0.0024202	1	8077	8077		172.03	49.855	1	22164000			32099	3994	22250	22324	32498	32498					0.034245896460333825
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7717590332031	2	495.771991	989.529429	0.94728	0.00046963	-1.2642	-0.00062675	-0.3169	-0.00015711	495.7714413134811	23.724	0.26145	23.724	23.619	23.88	0					11	5	3	0	0	0	0.03984	1	8095	8095		99.375	27.997	1	2207300			32100	3994	22250	22324	32499	32499					0.034245896460333825
QVQAQAAL	8	Unmodified	_QVQAQAAL_					0	0	0			REV__ENST00000507175.5_1_5:145826912-145859658:+|nuORF	REV__ENST00000507175.5_1_5:145826912-145859658:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.7321472167969	2	414.732335	827.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.632	1	38.632	38.132	39.132	0								0	0	0	1.7419	1	15205	15205		44.531	0	1		+		32101	14052	22251	22325	32500	32500					0.029489426918871686
QVQARQLSS	9	Unmodified	_QVQARQLSS_					0	0	0			REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.75018310546875	2	508.777805	1015.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.266	1	12.266	11.766	12.766	0								0	0	0	0.24724	1	2325	2325		44.117	3.5442	1		+		32102	15530	22252	22326	32501	32501					0.03390786669388035
QVQAVLQRK	9	Unmodified	_QVQAVLQRK_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3272705078125	2	535.327465	1068.64038	0.1766	9.4539E-05	0.040049	2.144E-05	0.21665	0.00011598	535.3273973776004	13.043	0.16134	13.043	12.955	13.117	0					7	4	2	0	0	0	0.36892	1	2888	2888		29.15	6.1071	1	468110			32103	1839	22253	22327	32502	32502					0.10880229354143012
QVQAVLQRK	9	Unmodified	_QVQAVLQRK_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.32763671875	2	535.327465	1068.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.815	1	12.815	12.315	13.315	0								0	0	0	0.3245	1	2511	2511		23.042	10.836	1				32104	1839	22253	22327	32503	32503					0.10880229354143012
QVQDLFNKK	9	Unmodified	_QVQDLFNKK_					0	0	0		ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.3119506835938	2	560.31148	1118.60841	0.49656	0.00027823	0.22752	0.00012748	0.72407	0.00040571	560.3118284222336	27.192	0.50798	27.192	27.075	27.583	0					22	12	4	0	0	0	0.01873	1	9462	9462		124.08	30.885	1	1924000			32105	983	22254	22328	32504	32504					0.053848168803369845
QVQDLFNKK	9	Unmodified	_QVQDLFNKK_					0	0	0		ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.3121948242188	2	560.31148	1118.60841	-0.43947	-0.00024624	0.75875	0.00042514	0.31928	0.0001789	560.3120639015727	26.957	0.19257	26.957	26.855	27.048	0					13	6	3	0	0	0	0.48389	1	8528	8528		34.173	1.3601	1	367950			32106	983	22254	22328	32505	32505					0.053848168803369845
QVQEGTKVLK	10	Unmodified	_QVQEGTKVLK_					0	0	0		CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant;CKAP2|p.R384Gfs*6|1|0.18|ENSG00000136108|chr13:52462405-52462405|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-4|CKAP2;CKAP2|p.T579Pfs*11|1|0.07|ENSG00000136108|chr13:52474011-52474011|A/-|frameshift_variant;CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.8348388671875	2	565.332413	1128.65027	-0.34642	-0.00019584	1.1318	0.00063984	0.78537	0.000444	565.3329467537311	18.818	0.10929	18.818	18.75	18.859	0					11	3	4	0	0	0	0.21778	1	4978	4978		93.598	27.168	1	448830			32107	545	22255	22329	32506	32506					0.09109372568855179
QVQEGTKVLK	10	Unmodified	_QVQEGTKVLK_					0	0	0		CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant;CKAP2|p.R384Gfs*6|1|0.18|ENSG00000136108|chr13:52462405-52462405|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-4|CKAP2;CKAP2|p.T579Pfs*11|1|0.07|ENSG00000136108|chr13:52474011-52474011|A/-|frameshift_variant;CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.332763671875	2	565.332413	1128.65027	0.19176	0.00010841	0.42896	0.00024251	0.62072	0.00035091	565.3326731889845	19.058	0.16385	19.058	18.951	19.115	0					9	3	4	0	0	0	0.0079448	1	5948	5948		143.37	24.631	1	2085200			32108	545	22255	22329	32507	32507					0.09109372568855179
QVQELELK	8	Unmodified	_QVQELELK_					0	0	0		nc|ENSG00000198929|O75052-2|NOS1AP;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	nc|ENSG00000198929|O75052-2|NOS1AP	nc|ENSG00000198929|O75052-2|NOS1AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.76654052734375	2	493.779482	985.544411	0.025443	1.2563E-05	-0.26474	-0.00013072	-0.2393	-0.00011816	493.7794082307369	26.804	0.74902	26.804	26.639	27.388	0					34	18	2	0	0	0	0.28427	1	8623	8623		87.754	0	1	103200			32109	7642	22256	22330	32508	32508					0.051060367233731085
QVQLGVAL	8	Unmodified	_QVQLGVAL_					0	0	0		ENST00000556123.1_1_14:69951498-69951735:+|nuORF	ENST00000556123.1_1_14:69951498-69951735:+|nuORF	ENST00000556123.1_1_14:69951498-69951735:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2526550292969	2	414.252903	826.491253	0.58567	0.00024262	-0.74893	-0.00031025	-0.16326	-6.763E-05	414.2525727870057	30.026	0.42443	30.026	29.846	30.27	0					34	15	3	0	0	0	0.64096	1	9495	9495		42.474	1.9018	1	608430			32110	10662	22257	22331	32509	32509					0.07106703731381003
QVQMMRINK	9	Unmodified	_QVQMMRINK_					0	0	0			REV__APBA2|p.A397V|1|0.62|ENSG00000034053|chr15:29093195-29093195|C/T|missense_variant	REV__APBA2|p.A397V|1|0.62|ENSG00000034053|chr15:29093195-29093195|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.3057250976562	2	574.307361	1146.60017	-1.5055	-0.00086463	-1.9512	-0.0011206	-3.4568	-0.0019852	574.3065133331393	21.896	0.1503	21.896	21.792	21.943	0					9	3	3	0	0	0	0.047412	1	6440	6440		96.19	19.416	1	150940	+		32111	12180	22258	22332	32510	32510					0.032732233677052136
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	599.8309326171875	2	599.830569	1197.64658	0.14018	8.4085E-05	0.27438	0.00016458	0.41456	0.00024867	599.8306722606704	16.535	0.068333	16.535	16.47	16.538	0					6	2	3	0	0	0	0.084047	1	3773	3773		93.598	16.28	1	644270			32112	6889	22259	22333	32511	32511					0.05566702794953926
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2228088378906	3	400.222805	1197.64658	0.93567	0.00037447	-0.9783	-0.00039154	-0.042633	-1.7063E-05	400.2223997313563	16.821	0.21187	16.821	16.74	16.952	0					14	5	4	0	0	0	0.575	1	4633	4633		55.721	28.971	1	776910			32113	6889	22259	22333	32512	32512					0.05566702794953926
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.83056640625	2	599.830569	1197.64658	-0.12091	-7.2526E-05	0.11758	7.0525E-05	-0.0033355	-2.0007E-06	599.8306524597233	16.817	0.17191	16.817	16.728	16.9	0					12	4	4	0	0	0	0.0091991	1	4639	4639		125.71	42.962	1	2477000			32114	6889	22259	22333	32513	32513					0.05566702794953926
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	599.8304443359375	2	599.830569	1197.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.558	1	16.558	16.058	17.058	0								0	0	0	0.37035	1	3998	3998		42.338	10.808	1				32115	6889	22259	22333	32514	32514					0.05566702794953926
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.8305053710938	2	599.830569	1197.64658	0.22566	0.00013535	-0.18317	-0.00010987	0.042482	2.5482E-05	599.8304537195067	16.752	0.15456	16.752	16.647	16.801	0					8	3	3	0	0	0	0.0036452	1	4859	4859		128.6	58.975	1	1506300			32116	6889	22259	22333	32515	32515					0.05566702794953926
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	599.8305053710938	2	599.830569	1197.64658	-1.8625	-0.0011172	2.3398	0.0014035	0.47728	0.00028629	599.8317790365545	16.591	0.12943	16.591	16.506	16.636	0					7	3	3	0	0	0	0.24536	1	3975	3975		68.846	22.894	1	340580			32117	6889	22259	22333	32516	32516					0.05566702794953926
QVQPVSRKK	9	Unmodified	_QVQPVSRKK_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3280639648438	2	535.327465	1068.64038	1.8042	0.00096586	-0.68644	-0.00036747	1.1178	0.00059839	535.3270692232409	13.016	0.14132	13.016	12.971	13.112	0					6	3	2	0	0	0	0.035106	1	3083	3083		98.629	13.27	1	305410			32118	5220	22260	22334	32517	32517					0.10880229354120274
QVQQLLVQ	8	Unmodified	_QVQQLLVQ_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|244|1|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|244|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2825622558594	2	478.282192	954.549831	-0.32523	-0.00015555	1.228	0.00058732	0.90274	0.00043176	478.2826319740731	27.21	0.13377	27.21	27.129	27.262	0					5	3	2	0	0	0	0.54629	1	8881	8881		55.504	4.3115	1	127250	+		32119	20728	22261	22335	32518	32518					0.0707376030584328
QVQRKYTE	8	Unmodified	_QVQRKYTE_					0	0	0			REV__nc|ENSG00000134709|Q9UJC3-2|HOOK1	REV__nc|ENSG00000134709|Q9UJC3-2|HOOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.28173828125	2	526.28018	1050.54581	3.459	0.0018204	-0.65086	-0.00034254	2.8081	0.0014778	526.2797633329938	12.876	0.40873	12.876	12.64	13.049	0					17	9	3	0	0	0	0.60719	1	2858	2858		47.916	1.9434	1	240030	+		32120	14758	22262	22336	32519	32519					0.02255670812110111
QVQRPFMNK	9	Unmodified	_QVQRPFMNK_					0	0	0		ENST00000281172.9_1_12:15822752-15835827:-|nuORF	ENST00000281172.9_1_12:15822752-15835827:-|nuORF	ENST00000281172.9_1_12:15822752-15835827:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.3060913085938	2	574.305675	1146.5968	0.062606	3.5955E-05	-0.14548	-8.3548E-05	-0.082871	-4.7593E-05	574.3061427967825	21.848	0.19254	21.848	21.706	21.899	0					12	5	3	0	0	0	0.071197	1	6322	6322		87.754	34.818	1	102170			32121	8411	22263	22337	32520	32520					0.029362965853351852
QVQVVLNQK	9	Unmodified	_QVQVVLNQK_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.3135986328125	2	528.314023	1054.61349	1.2308	0.00065028	-1.6713	-0.00088299	-0.44048	-0.00023271	528.3133530492865	25.711	0.080238	25.711	25.675	25.756	0					4	2	2	0	0	0	0.14603	1	7775	7775		68.787	21.129	1	75689			32122	4404	22264	22338	32521	32521					0.08837120742941806
QVQVVLNQK	9	Unmodified	_QVQVVLNQK_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.314453125	2	528.314023	1054.61349	2.1889	0.0011564	-1.576	-0.00083262	0.61286	0.00032378	528.313257578852	26.045	0.26358	26.045	25.874	26.138	0					9	6	2	0	0	0	0.023074	1	8931	8931		116.9	51.438	1	470410			32123	4404	22264	22338	32522	32522					0.08837120742941806
QVQVVLNQK	9	Unmodified	_QVQVVLNQK_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.3148193359375	2	528.314023	1054.61349	0.207	0.00010936	0.72585	0.00038348	0.93286	0.00049284	528.3141882228259	25.744	0.18192	25.744	25.589	25.771	0					6	5	2	0	0	0	0.0090225	1	8047	8047		143.11	63.168	1	192100			32124	4404	22264	22338	32523	32523					0.08837120742941806
QVQVVLNQK	9	Unmodified	_QVQVVLNQK_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3143310546875	2	528.314023	1054.61349	1.7475	0.00092322	-0.80535	-0.00042548	0.94214	0.00049774	528.3134323636565	26.022	0.4472	26.022	25.738	26.185	0					16	7	4	0	0	0	0.0033161	1	9255	9255		166.78	92.527	1	1238100			32125	4404	22264	22338	32524	32524					0.08837120742941806
QVQVVLNQK	9	Unmodified	_QVQVVLNQK_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.3150024414062	2	528.314023	1054.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.808	1	25.808	25.308	26.308	0								0	0	0	0.040031	1	8260	8260		90.777	10.837	1				32126	4404	22264	22338	32525	32525					0.08837120742941806
QVQVVLNQK	9	Unmodified	_QVQVVLNQK_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3143920898438	2	528.314023	1054.61349	1.6288	0.00086054	-1.1038	-0.00058315	0.52505	0.00027739	528.3134319967509	25.941	0.39987	25.941	25.701	26.101	0					9	6	2	0	0	0	0.0062933	1	9114	9114		152.47	72.758	1	1218500			32127	4404	22264	22338	32526	32526					0.08837120742941806
QVQVVLNQK	9	Unmodified	_QVQVVLNQK_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1;nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.314208984375	2	528.314023	1054.61349	3.467	0.0018317	-3.5421	-0.0018713	-0.075093	-3.9673E-05	528.3123154865996	25.975	0.21888	25.975	25.866	26.085	0					7	4	2	0	0	0	0.03984	1	9131	9131		99.375	42.654	1	921690			32128	4404	22264	22338	32527	32527					0.08837120742941806
QVRAQLLAK	9	Unmodified	_QVRAQLLAK_					0	0	0			REV__ENST00000485975.1_1_9:139264964-139265319:-|nuORF	REV__ENST00000485975.1_1_9:139264964-139265319:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.3259887695312	2	513.824558	1025.63456	-0.21675	-0.00011137	0.92442	0.00047499	0.70767	0.00036362	513.8250047720971	14.644	0.26147	14.644	14.443	14.704	0					17	11	2	0	0	0	0.41113	1	3183	3183		18.324	0	1	167670	+		32129	17139	22265	22339	32528	32528					0.12277130842471706
QVRCSVKH	8	Carbamidomethyl (C)	_QVRC(Carbamidomethyl (C))SVKH_	QVRC(1)SVKH		QVRC(99)SVKH		0	1	0			REV__ENST00000464316.5_1_3:156870794-156871031:-|nuORF	REV__ENST00000464316.5_1_3:156870794-156871031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2688903808594	2	507.269093	1012.52363	0.86733	0.00043997	-1.259	-0.00063865	-0.39168	-0.00019869	507.2686058676441	13.342	0.16335	13.342	13.265	13.428	0					9	4	3	0	0	0	0.25143	1	3026	3026		98.629	27.813	1	380000	+		32130	19401	22266	22340	32529	32529	693				0.01787167862721617
QVRCSVKH	8	Carbamidomethyl (C)	_QVRC(Carbamidomethyl (C))SVKH_	QVRC(1)SVKH		QVRC(88)SVKH		0	1	0			REV__ENST00000464316.5_1_3:156870794-156871031:-|nuORF	REV__ENST00000464316.5_1_3:156870794-156871031:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2689514160156	2	507.269093	1012.52363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.373	1	13.373	12.873	13.873	0								0	0	0	1.7419	1	3242	3242		87.754	7.2997	1		+		32131	19401	22266	22340	32530	32530	693				0.01787167862721617
QVRCSVKH	8	Carbamidomethyl (C)	_QVRC(Carbamidomethyl (C))SVKH_	QVRC(1)SVKH		QVRC(79)SVKH		0	1	0			REV__ENST00000464316.5_1_3:156870794-156871031:-|nuORF	REV__ENST00000464316.5_1_3:156870794-156871031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2691955566406	2	507.269093	1012.52363	-0.17941	-9.1009E-05	0.48567	0.00024637	0.30626	0.00015536	507.269245929886	13.314	0.15235	13.314	13.258	13.41	0					5	3	2	0	0	0	0.32815	1	3069	3069		79.451	10.605	1	272420	+		32132	19401	22266	22340	32531	32531	693				0.01787167862721617
QVRLYAKVK	9	Unmodified	_QVRLYAKVK_					0	0	0			REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.901123046875	3	368.901114	1103.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.381	1	24.381	23.881	24.881	0								0	0	0	0.27939	1	8528	8528		39.253	5.0803	1		+		32133	14679	22267	22341	32532	32532					0.13381990393577325
QVRTRIVDM	9	Unmodified	_QVRTRIVDM_					0	0	0			REV__ENSG00000160785|ENST00000359511|SLC25A44	REV__ENSG00000160785|ENST00000359511|SLC25A44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2100830078125	3	373.209731	1116.60736	0.84353	0.00031481	-0.81533	-0.00030429	0.028199	1.0524E-05	373.2096237524872	37.091	1.1662	37.091	36.771	37.937	0					87	36	3	0	0	0	0.56424	1	14834	14834		25.574	0	1	150180	+		32134	15763	22268	22342	32533	32533					0.05372279239782074
QVSALQGL	8	Unmodified	_QVSALQGL_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.234375	2	408.23471	814.454868	0.63914	0.00026092	-1.1208	-0.00045755	-0.48167	-0.00019664	408.2342402236559	19.19	0.10972	19.19	19.138	19.248	0					4	2	2	0	0	0	0.63077	1	5760	5760		44.117	0	1	85378			32135	9902	22269	22343	32534	32534					0.04021826834662079
QVSFRIGGGR	10	Unmodified	_QVSFRIGGGR_					0	0	0		ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.8023681640625	2	538.801614	1075.58868	0.85424	0.00046026	-1.3318	-0.00071758	-0.47757	-0.00025732	538.8004715137184	23.081	0.18411	23.081	22.962	23.146	0					9	6	2	0	0	0	0.58189	1	6620	6620		36.447	0.82846	1	53573			32136	11078	22270	22344	32535	32535					0.05390485660223021
QVSLPRVALK	10	Unmodified	_QVSLPRVALK_					0	0	0			REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.8531494140625	2	555.853316	1109.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.368	1	28.368	27.868	28.868	0								0	0	0	0.41967	1	10385	10385		24.519	0.31644	1		+		32137	15901	22271	22345	32536	32536					0.14161973048021537
QVSNWFGNK	9	Unmodified	_QVSNWFGNK_					0	0	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3;nc|ENSG00000167081|P40426-4|PBX3;nc|ENSG00000167081|P40426-3|PBX3;ENST00000557978.6_1_19:19672836-19680924:-|nuORF;ENST00000558222.1_1_19:19675736-19681567:-|nuORF;ENSG00000105717|ENST00000251203|PBX4	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2674560546875	2	540.267073	1078.51959	0.66889	0.00036138	-0.007196	-3.8878E-06	0.66169	0.00035749	540.2670636739113	34.889	0.21431	34.889	34.784	34.998	0					6	4	2	0	0	0	0.4966	1	13429	13429		32.812	0.85756	1	142480			32138	5965	22272	22346	32537	32537					-0.01652598359351032
QVSPAEAR	8	Unmodified	_QVSPAEAR_					0	0	0			REV__ENST00000391854.6_1_1:235812975-235813251:-|nuORF	REV__ENST00000391854.6_1_1:235812975-235813251:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2271728515625	2	429.227417	856.44028	-0.25429	-0.00010915	-0.092031	-3.9502E-05	-0.34632	-0.00014865	429.22737011607524	12.924	0.11167	12.924	12.845	12.957	0					6	5	2	0	0	0	0.53424	1	2558	2558		56.721	0	1	102240	+		32139	18815	22273	22347	32538	32538					0.0063175468651479605
QVSPRITFK	9	Unmodified	_QVSPRITFK_					0	0	0		ENST00000465517.1_1_12:40223765-40265636:-|nuORF;SLC2A13|p.T491Qfs*41|1|0.08|ENSG00000151229|chr12:39764833-39764833|T/-|frameshift_variant;ENSG00000151229|ENST00000280871|SLC2A13	ENST00000465517.1_1_12:40223765-40265636:-|nuORF	ENST00000465517.1_1_12:40223765-40265636:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.3170166015625	2	538.316566	1074.61858	2.0401	0.0010982	-2.7735	-0.001493	-0.73344	-0.00039482	538.3148796724648	27.263	0.50921	27.263	27.127	27.636	0					27	12	4	0	0	0	0.024086	1	9488	9488		89.029	39.587	1	991780			32140	4951	22274	22348	32539	32539					0.0842542460554796
QVSPRITFK	9	Unmodified	_QVSPRITFK_					0	0	0		ENST00000465517.1_1_12:40223765-40265636:-|nuORF;SLC2A13|p.T491Qfs*41|1|0.08|ENSG00000151229|chr12:39764833-39764833|T/-|frameshift_variant;ENSG00000151229|ENST00000280871|SLC2A13	ENST00000465517.1_1_12:40223765-40265636:-|nuORF	ENST00000465517.1_1_12:40223765-40265636:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3168334960938	2	538.316566	1074.61858	0.69282	0.00037295	-0.15487	-8.3366E-05	0.53795	0.00028959	538.3165168676571	27.163	0.37139	27.163	27.053	27.424	0					20	7	4	0	0	0	0.039418	1	9699	9699		83.647	30.71	1	786870			32141	4951	22274	22348	32540	32540					0.0842542460554796
QVSPTRVLG	9	Unmodified	_QVSPTRVLG_					0	0	0			REV__ZFP36|p.V330Ffs*2|1|0.35|ENSG00000128016|chr19:39408687-39408688|TG/-|frameshift_variant	REV__ZFP36|p.V330Ffs*2|1|0.35|ENSG00000128016|chr19:39408687-39408688|TG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7800598144531	2	478.779816	955.545079	0.49884	0.00023883	-0.29261	-0.0001401	0.20622	9.8736E-05	478.7796860230548	16.8	0.59322	16.8	16.375	16.969	0					35	14	3	0	0	0	0.14603	1	4691	4691		68.787	12.066	1	275390	+		32142	14508	22275	22349	32541	32541					0.06552876163095789
QVSSFISAKS	10	Unmodified	_QVSSFISAKS_					0	0	0		ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENST00000302806.5_1_4:48621203-48655803:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2822875976562	2	527.282389	1052.55022	0.28442	0.00014997	-1.647	-0.00086843	-1.3626	-0.00071846	527.2812831093821	17.242	0.16949	17.242	17.132	17.301	0					6	3	2	0	0	0	0.49411	1	5075	5075		45.972	3.5761	1	417840			32143	8502	22276	22350	32542	32542					0.026051352350577872
QVSSVRIVSA	10	Unmodified	_QVSSVRIVSA_					0	0	0		nc|ENSG00000152409|Q8N9B5-2|JMY;ENSG00000152409|ENST00000396137|JMY	nc|ENSG00000152409|Q8N9B5-2|JMY	nc|ENSG00000152409|Q8N9B5-2|JMY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3048706054688	2	523.303655	1044.59276	1.1698	0.00061215	0.89678	0.00046929	2.0666	0.0010814	523.3040239397892	50.322	0.65429	50.322	49.91	50.564	0					65	40	2	0	0	0	0.70274	1	16422	16422		21.686	0.73882	1	65429			32144	5012	22277	22351	32543	32543					0.07224530363282611
QVTDFGFAK	9	Unmodified	_QVTDFGFAK_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB;ENST00000587533.1_1_19:14208360-14208546:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000165059|ENST00000377276|PRKACG;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.7593688964844	2	506.758549	1011.50255	0.81939	0.00041523	0.24787	0.00012561	1.0673	0.00054084	506.7587305827375	35.839	0.28971	35.839	35.739	36.029	0					34	14	3	0	0	0	0.33044	1	11736	11736		47.657	8.8512	1	261080			32145	4516	22278	22352	32544	32544					-0.002745189651477631
QVTDFGFAK	9	Unmodified	_QVTDFGFAK_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB;ENST00000587533.1_1_19:14208360-14208546:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000165059|ENST00000377276|PRKACG;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7586669921875	2	506.758549	1011.50255	0.30296	0.00015353	0.39665	0.000201	0.69961	0.00035453	506.7586597059386	35.877	0.27011	35.877	35.79	36.06	0					21	10	3	0	0	0	0.41113	1	12801	12801		40.778	5.1599	1	211850			32146	4516	22278	22352	32545	32545					-0.002745189651477631
QVTDFGFAK	9	Unmodified	_QVTDFGFAK_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB;ENST00000587533.1_1_19:14208360-14208546:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000165059|ENST00000377276|PRKACG;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7585754394531	2	506.758549	1011.50255	0.096658	4.8982E-05	0.71078	0.00036019	0.80744	0.00040918	506.7588883127279	35.998	0.42275	35.998	35.808	36.231	0					38	15	3	0	0	0	0.33044	1	12798	12798		47.657	12.039	1	332710			32147	4516	22278	22352	32546	32546					-0.002745189651477631
QVTDFGFAK	9	Unmodified	_QVTDFGFAK_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB;ENST00000587533.1_1_19:14208360-14208546:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000165059|ENST00000377276|PRKACG;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.75848388671875	2	506.758549	1011.50255	-0.20641	-0.0001046	-0.10739	-5.4421E-05	-0.3138	-0.00015902	506.75847101852173	36.039	0.36568	36.039	35.931	36.297	0					24	7	4	0	0	0	0.19605	1	13954	13954		62.107	12.083	1	1694300			32148	4516	22278	22352	32547	32547					-0.002745189651477631
QVTEWLHVG	9	Unmodified	_QVTEWLHVG_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7761840820312	2	534.777274	1067.53999	-1.3424	-0.00071788	-0.40024	-0.00021404	-1.7426	-0.00093192	534.7770500261987	14.999	0.08474	14.999	14.959	15.043	0					5	3	2	0	0	0	0.43426	1	3287	3287		38.806	1.647	1	77493			32149	10185	22279	22353	32548	32548					0.008925723004722386
QVTILGTNR	9	Unmodified	_QVTILGTNR_					0	0	0			REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.30059814453125	2	501.290548	1000.56654	2.9248	0.0014662	-0.86347	-0.00043285	2.0613	0.0010333	501.2890016917355	48.15	0.75984	48.15	47.794	48.554	0					110	40	4	0	0	0	0.43534	1	19098	19098		31.634	7.1151	1	326500	+		32150	15631	22280	22354	32549	32549					0.06628261191792717
QVTKPKEAL	9	Unmodified	_QVTKPKEAL_					0	0	0			REV__ENSG00000136813|ENST00000684092|ECPAS	REV__ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.3036804199219	2	507.303124	1012.5917	-0.088209	-4.4749E-05	0.96736	0.00049075	0.87915	0.000446	507.3037862903916	21.271	0.11894	21.271	21.198	21.317	0					5	3	2	0	0	0	0.41113	1	5844	5844		40.778	3.6191	1	53246	+		32151	14880	22281	22355	32550	32550					0.08590315994376851
QVTKTIKK	8	Unmodified	_QVTKTIKK_					0	0	0			REV__ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant	REV__ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.30792236328125	2	473.30821	944.601866	-0.53544	-0.00025343	-0.19467	-9.2139E-05	-0.73012	-0.00034557	473.3080974473811	16.854	0.13195	16.854	16.768	16.9	0					6	3	2	0	0	0	0.5535	1	4658	4658		54.776	0	1	340040	+		32152	12236	22282	22356	32551	32551					0.12734923719619928
QVTPEFRTV	9	Unmodified	_QVTPEFRTV_					0	0	0		ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7929077148438	2	538.790381	1075.56621	3.3994	0.0018316	0.6459	0.000348	4.0453	0.0021796	538.790680521351	25.389	0.75331	25.389	25.23	25.983	0					22	13	3	0	0	0	0.087861	1	8871	8871		82.241	9.3613	1	886810			32153	4035	22283	22357	32552	32552					0.03144841471953441
QVTRLLLAHG	10	Unmodified	_QVTRLLLAHG_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.3350830078125	2	554.33529	1106.65603	-0.41896	-0.00023225	1.7263	0.00095693	1.3073	0.00072468	554.3358803090563	18.06	0.086365	18.06	17.978	18.064	0					4	2	2	0	0	0	0.60076	1	4646	4646		34.173	2.6427	1	86632			32154	4821	22284	22358	32553	32553					0.10696515871154588
QVTRSFKRRR	10	Unmodified	_QVTRSFKRRR_					0	0	0			REV__CDH18|p.R555K|1|0.46|ENSG00000145526|chr5:19483519-19483519|C/T|missense_variant	REV__CDH18|p.R555K|1|0.46|ENSG00000145526|chr5:19483519-19483519|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.27093505859375	3	445.268971	1332.78508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.636	1	31.636	31.136	32.136	0								0	0	0	0.4201	1	10917	10917		16.717	1.3843	1		+		32155	12397	22285	22359	32554	32554					0.13200290553959348
QVTSQILQK	9	Unmodified	_QVTSQILQK_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8087768554688	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.108	1	26.108	25.608	26.608	0								0	0	0	0.12601	1	8358	8358		65.465	10.743	1				32156	6017	22286	22360	32555	32555					0.07745414506052839
QVTVEEHVF	9	Unmodified	_QVTVEEHVF_					0	0	0		nc|ENSG00000163376|Q8NFY9-2|KBTBD8;ENSG00000163376|ENST00000417314|KBTBD8	nc|ENSG00000163376|Q8NFY9-2|KBTBD8	nc|ENSG00000163376|Q8NFY9-2|KBTBD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2750244140625	2	544.274564	1086.53457	0.32512	0.00017696	0.57932	0.00031531	0.90444	0.00049226	544.2747855362521	32.941	0.51596	32.941	32.743	33.259	0					31	12	3	0	0	0	0.26904	1	12518	12518		53.351	2.016	1	614570			32157	5549	22287	22361	32556	32556					-0.005231512820046191
QVVAPPTPPA	10	Unmodified	_QVVAPPTPPA_					0	0	0			REV__sp|F5HEA3|TEG7_HCMVMTegumentproteinUL51homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL71PE=3SV=1	REV__sp|F5HEA3|TEG7_HCMVMTegumentproteinUL51homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL71PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.77728271484375	2	488.776742	975.538931	-0.077405	-3.7834E-05	-0.42502	-0.00020774	-0.50243	-0.00024557	488.77660002628403	25.763	0.21471	25.763	25.603	25.817	0					8	3	3	0	0	0	0.61187	1	9150	9150		32.812	2.3088	1	395300	+		32158	21564	22288	22362	32557	32557					0.050183579315557836
QVVGVRVKD	9	Unmodified	_QVVGVRVKD_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.30078125	2	500.300916	998.587279	0.89891	0.00044973	-0.89481	-0.00044767	0.0041074	2.0549E-06	500.30037510764686	23.103	0.36668	23.103	22.995	23.361	0					15	7	4	0	0	0	0.24095	1	7951	7951		56.721	7.185	1	1070500	+		32159	16476	22289	22363	32558	32558					0.08792851571467963
QVVGVRVKD	9	Unmodified	_QVVGVRVKD_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.30084228515625	2	500.300916	998.587279	1.0914	0.00054603	-1.4695	-0.0007352	-0.37812	-0.00018917	500.3002655873298	23.107	0.36221	23.107	22.973	23.335	0					15	7	3	0	0	0	0.4966	1	7810	7810		32.812	3.6424	1	738020	+		32160	16476	22289	22363	32559	32559					0.08792851571467963
QVVLHQSKI	9	Unmodified	_QVVLHQSKI_					0	0	0			REV__ENST00000574081.5_2_17:5113523-5113853:-|nuORF	REV__ENST00000574081.5_2_17:5113523-5113853:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.5478820800781	3	351.213469	1050.61858	-0.83255	-0.0002924	0.83509	0.0002933	0.0025427	8.9302E-07	351.5481511080046	22.911	0.18302	22.911	22.794	22.977	0					11	6	2	0	0	0	0.58342	1	6818	6818		23.523	3.4922	1	157820	+		32161	20401	22290	22364	32560	32560					0.09529424605557324
QVVPKFKKK	9	Unmodified	_QVVPKFKKK_					0	0	0			REV__nc|ENSG00000106078|O75128-6|COBL	REV__nc|ENSG00000106078|O75128-6|COBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.3610229492188	2	551.360776	1100.707	1.8169	0.0010018	-0.90275	-0.00049774	0.91419	0.00050405	551.3601999004549	25.506	0.37103	25.506	25.347	25.718	0					19	7	4	0	0	0	0.37197	1	8952	8952		44.117	0	1	763040	+		32162	12541	22291	22365	32561	32561					0.160674649160228
QVVQKQPQ	8	Unmodified	_QVVQKQPQ_					0	0	0			REV__ENSG00000137073|ENST00000379238|UBAP2	REV__ENSG00000137073|ENST00000379238|UBAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.7715759277344	2	477.771991	953.529429	-1.4765	-0.00070544	0.48476	0.00023161	-0.99176	-0.00047383	477.77209454398866	26.842	0.30925	26.842	26.686	26.995	0					20	11	2	0	0	0	0.70055	1	8464	8464		33.516	0	1	124000	+		32163	14900	22292	22366	32562	32562					0.0508058964603606
QVVRHVINSAV	11	Unmodified	_QVVRHVINSAV_					0	0	0		ENST00000527071.1_1_8:145254030-145268916:+|nuORF	ENST00000527071.1_1_8:145254030-145268916:+|nuORF	ENST00000527071.1_1_8:145254030-145268916:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	611.3554077148438	2	611.356754	1220.69895	0.090865	5.5551E-05	-0.83247	-0.00050893	-0.7416	-0.00045338	611.3560762722856	52.415	0.51906	52.415	52.103	52.622	0					53	32	2	0	0	0	0.7887	1	16890	16890		17.468	0.75062	1	90815			32164	10383	22293	22367	32563	32563					0.09743285928584555
QVVSMVKGL	9	Oxidation (M)	_QVVSM(Oxidation (M))VKGL_		QVVSM(1)VKGL		QVVSM(48)VKGL	0	0	1			REV__HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	REV__HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7822570800781	2	488.778428	975.542302	-0.51719	-0.00025279	2.6615	0.0013009	2.1443	0.0010481	488.7791811951089	28.136	0.31791	28.136	27.959	28.277	0					11	6	3	0	0	0	0.3269	1	10115	10115		47.96	12.807	1	507690	+		32165	16470	22294	22368	32564	32564		628			0.053552847139371806
QVVSPVEHA	9	Unmodified	_QVVSPVEHA_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7614440917969	2	483.256174	964.497795	0.60279	0.0002913	-1.2206	-0.00058986	-0.6178	-0.00029856	483.25535293810464	25.399	0.49289	25.399	25.102	25.595	0					38	11	6	0	0	0	0.55379	1	8639	8639		26.693	2.4902	1	2265700	+		32166	12992	22295	22369	32565	32565					0.014125968920893683
QVVTIKGKSN	10	Unmodified	_QVVTIKGKSN_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.322265625	2	537.319306	1072.62406	3.3426	0.001796	1.21	0.00065016	4.5526	0.0024462	537.31990428978	29.232	0.55673	29.232	29.026	29.583	0					29	11	4	0	0	0	0.31894	1	10675	10675		52.937	0	1	1302800	+		32167	16914	22296	22370	32566	32566					0.09065103397369967
QVYGGDYG	8	Unmodified	_QVYGGDYG_					0	0	0			REV__nc|ENSG00000104131|O75822-2|EIF3J	REV__nc|ENSG00000104131|O75822-2|EIF3J	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.6849670410156	2	429.68505	857.355547	-0.57235	-0.00024593	0.78136	0.00033574	0.20901	8.9809E-05	429.68532573299007	49.866	0.35118	49.866	49.81	50.161	0					23	14	2	0	0	0	0.7887	1	17997	17997		12.959	3.4886	1	192150	+		32168	13710	22297	22371	32567	32567					-0.07883615850096248
QVYGLYAKQ	9	Unmodified	_QVYGLYAKQ_					0	0	0			REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2861938476562	2	535.287474	1068.5604	-1.3604	-0.0007282	-0.32357	-0.0001732	-1.684	-0.0009014	535.2872212747512	11.877	0.11746	11.877	11.794	11.912	0					16	7	3	0	0	0	0.20551	1	2266	2266		60.972	16.855	1	175670	+		32169	21900	22298	22372	32568	32568					0.028857429602794582
QWFFSSYST	9	Unmodified	_QWFFSSYST_					0	0	0			REV__ENST00000586173.1_1_19:30099701-30099833:+|nuORF	REV__ENST00000586173.1_1_19:30099701-30099833:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.754638671875	2	576.753464	1151.49238	-1.593	-0.00091874	1.344	0.00077514	-0.24899	-0.0001436	576.7544693496898	35.535	0.64758	35.535	35.105	35.752	0					43	23	3	0	0	0	0.45358	1	12606	12606		37.159	9.2769	1	320320	+		32170	20482	22299	22373	32569	32569					-0.07731126690373458
QWFLPLMKVR	10	Oxidation (M)	_QWFLPLM(Oxidation (M))KVR_		QWFLPLM(1)KVR		QWFLPLM(55)KVR	0	0	1		ENST00000549260.5_1_12:105152780-105153023:+|nuORF	ENST00000549260.5_1_12:105152780-105153023:+|nuORF	ENST00000549260.5_1_12:105152780-105153023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.253662109375	3	445.253159	1332.73765	-0.1868	-8.3172E-05	1.3508	0.00060144	1.164	0.00051827	445.2535394436421	19.289	0.11625	19.289	19.231	19.347	0					6	2	3	0	0	0	0.41384	1	6084	6084		54.722	8.8142	1	321930			32171	10607	22300	22374	32570	32570		424			0.0845887523876172
QWHLIGIIA	9	Unmodified	_QWHLIGIIA_					0	0	0			REV__ENSG00000129636|ENST00000320640|ITFG1	REV__ENSG00000129636|ENST00000320640|ITFG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.80615234375	2	525.808377	1049.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.544	1	32.544	32.044	33.044	0								0	0	0	0.25856	1	11328	11328		42.474	1.9018	1		+		32172	14553	22301	22375	32571	32571					0.07938343439468554
QWLERSFA	8	Unmodified	_QWLERSFA_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7645874023438	2	518.764166	1035.51378	1.5871	0.00082334	-1.3927	-0.00072249	0.19442	0.00010086	518.763619445162	14.549	0.26731	14.549	14.341	14.609	0					7	5	2	0	0	0	0.58597	1	3657	3657		51.335	3.4199	1	310620			32173	1023	22302	22376	32572	32572					-0.0025569687099959992
QWMGNEVEE	9	Unmodified	_QWMGNEVEE_					0	0	0			REV__ENST00000568121.1_1_16:34213335-34213557:-|nuORF	REV__ENST00000568121.1_1_16:34213335-34213557:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.231689453125	2	561.232039	1120.44952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.77	1	11.77	11.27	12.27	0								0	0	0	0.35507	1	2491	2491		24.203	4.206	1		+		32174	20357	22303	22377	32573	32573					-0.10588264810098735
QWNKKANGAG	10	Unmodified	_QWNKKANGAG_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2789916992188	2	537.277972	1072.54139	2.214	0.0011895	-0.058317	-3.1333E-05	2.1557	0.0011582	537.2777752480506	19.041	0.19633	19.041	18.941	19.138	0					7	4	2	0	0	0	0.357	1	5103	5103		60.972	2.7257	1	62920	+		32175	13075	22304	22378	32574	32574					0.008022063892212827
QWQILVSS	8	Unmodified	_QWQILVSS_					0	0	0			REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF	REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7608337402344	2	480.761092	959.507631	0.073737	3.545E-05	-0.81491	-0.00039178	-0.74118	-0.00035633	480.7608178498778	24.14	0.19651	24.14	24.052	24.249	0					10	6	2	0	0	0	0.65276	1	7082	7082		40.573	1.7665	1	211610	+		32176	15318	22305	22379	32575	32575					0.02625784897475114
QWQLDQKIP	9	Unmodified	_QWQLDQKIP_					0	0	0		ENST00000368444.7_1_6:123100853-123100973:+|nuORF	ENST00000368444.7_1_6:123100853-123100973:+|nuORF	ENST00000368444.7_1_6:123100853-123100973:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.814208984375	2	578.31148	1154.60841	-0.42314	-0.00024471	0.87082	0.00050361	0.44768	0.0002589	578.3119995991019	28.606	0.21278	28.606	28.499	28.712	0					9	4	3	0	0	0	0.16806	1	10491	10491		79.451	15.917	1	242610			32177	8924	22306	22380	32576	32576					0.037288168803115695
QWTRWSWRRSR	11	Unmodified	_QWTRWSWRRSR_					0	0	0			REV__ENST00000322354.3_2_19:40947971-40950195:-|nuORF	REV__ENST00000322354.3_2_19:40947971-40950195:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.6162719726562	3	535.61503	1603.82326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.597	1	38.597	38.097	39.097	0								0	0	0	0.45674	1	13803	13803		9.2118	0.41249	1		+		32178	18335	22307	22381	32577	32577					0.045501764686150636
QWVYKVAK	8	Unmodified	_QWVYKVAK_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.K339Nfs*3|2|0.28|ENSG00000107625|chr10:68914126-68914126|A/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2929992675781	2	511.295102	1020.57565	-0.22917	-0.00011717	-4.1056	-0.0020992	-4.3348	-0.0022164	511.7948618874963	12.351	0.070296	12.351	12.306	12.377	0					7	4	2	0	0	0	0.57802	1	2438	2438		52.299	2.7631	1	28733			32179	2489	22308	22382	32578	32578					0.06618654548128688
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.740478515625	2	506.740357	1011.46616	1.7661	0.00089496	-1.243	-0.00062985	0.52317	0.00026511	506.7399137796432	36.411	0.13326	36.411	36.347	36.481	0					8	6	2	0	0	0	0.1424	1	11939	11939		69.628	11.816	1	53289			32180	3270	22309	22383	32579	32579					-0.03911395861860001
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7407531738281	2	506.740357	1011.46616	0.84641	0.00042891	0.39509	0.00020021	1.2415	0.00062912	506.7406235552296	36.693	0.23788	36.693	36.573	36.811	0					16	6	3	0	0	0	0.10506	1	13850	13850		78.264	19.482	1	298570			32181	3270	22309	22383	32580	32580					-0.03911395861860001
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7403869628906	2	506.740357	1011.46616	0.15223	7.7139E-05	-0.20631	-0.00010455	-0.054088	-2.7409E-05	506.7403127210337	36.655	0.37784	36.655	36.572	36.95	0					22	11	4	0	0	0	0.013878	1	14284	14284		132.76	58.783	1	492820			32182	3270	22309	22383	32581	32581					-0.03911395861860001
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;BBS4|p.E506Vfs*5|1|0.05|ENSG00000140463|chr15:72737544-72737545|AA/-|frameshift_variant;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2683715820312	2	542.266542	1082.51853	0.62943	0.00034132	2.0619	0.0011181	2.6914	0.0014594	542.2677628109308	48.527	0.1831	48.527	48.457	48.64	0					13	10	2	0	0	0	0.25109	1	19280	19280		55.504	25.001	1	47458			32183	283	22310	22384	32582	32582					-0.019428127282481
QYAVLGAGLY	10	Unmodified	_QYAVLGAGLY_					0	0	0		nc|ENSG00000132259|Q8IV77-2|CNGA4;ENSG00000132259|ENST00000379936|CNGA4	nc|ENSG00000132259|Q8IV77-2|CNGA4	nc|ENSG00000132259|Q8IV77-2|CNGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7830810546875	2	527.782025	1053.5495	3.4746	0.0018338	-2.1374	-0.0011281	1.3372	0.00070573	527.780824246752	41.069	0.30935	41.069	40.959	41.269	0					13	7	2	0	0	0	0.51121	1	16354	16354		44.117	7.0883	1	145250			32184	3771	22311	22385	32583	32583					0.024863405860060084
QYAVLLNRF	9	Unmodified	_QYAVLLNRF_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.819091796875	2	562.316566	1122.61858	1.7798	0.0010008	-0.71247	-0.00040064	1.0673	0.00060015	562.3157601715495	45.287	0.12006	45.287	45.214	45.334	0					7	5	2	0	0	0	0.53083	1	18144	18144		29.15	6.1071	1	38190			32185	6724	22312	22386	32584	32584					0.06217424605551969
QYDTSSKTHS	10	Unmodified	_QYDTSSKTHS_					0	0	0		AFF1|p.R820Tfs*98|1|0.12|ENSG00000172493|chr4:87125045-87125048|AGAA/-|frameshift_variant;nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.K607Nfs*39|1|0.33|ENSG00000172493|chr4:87114670-87114670|A/-|frameshift_variant	AFF1|p.R820Tfs*98|1|0.12|ENSG00000172493|chr4:87125045-87125048|AGAA/-|frameshift_variant	AFF1|p.R820Tfs*98|1|0.12|ENSG00000172493|chr4:87125045-87125048|AGAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.2633666992188	2	577.259642	1152.50473	1.7566	0.001014	2.748	0.0015863	4.5046	0.0026003	577.2615742796858	36.807	0.38972	36.807	36.705	37.095	0					18	12	2	0	0	0	0.50287	1	14353	14353		45.022	4.244	1	193880			32186	86	22313	22387	32585	32585					-0.06542135018003137
QYEQLIKF	8	Unmodified	_QYEQLIKF_					0	0	0			REV__ENSG00000115419|ENST00000320717|GLS	REV__ENSG00000115419|ENST00000320717|GLS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7901611328125	2	534.78985	1067.56515	0.16673	8.9167E-05	0.16484	8.8156E-05	0.33158	0.00017732	534.7898922688344	30.523	0.34776	30.523	30.394	30.742	0					18	8	3	0	0	0	0.49216	1	11021	11021		60.972	4.2509	1	639100	+		32187	14110	22314	22388	32586	32586					0.034066271030496864
QYEQVKQLF	9	Unmodified	_QYEQVKQLF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.3128662109375	2	591.811313	1181.60807	0.25667	0.0001519	-0.22265	-0.00013177	0.034019	2.0133E-05	591.8108755204123	39.916	0.16805	39.916	39.844	40.012	0					17	6	3	0	0	0	0.040209	1	15197	15197		93.143	24.659	1	259510			32188	3404	22315	22389	32587	32587					0.02453397160456916
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.8007202148438	2	588.800414	1175.58628	1.0422	0.00061362	-0.53206	-0.00031328	0.51009	0.00030034	588.8000827360928	43.766	0.36189	43.766	43.628	43.99	0					47	19	3	0	0	0	0.27249	1	16447	16447		52.937	5.0211	1	544750			32189	3531	22316	22390	32588	32588					0.005505924119233896
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.3023681640625	2	588.800414	1175.58628	1.2937	0.00076175	0.38573	0.00022712	1.6795	0.00098887	588.8006336545556	43.703	0.32702	43.703	43.614	43.941	0					38	16	3	0	0	0	0.019882	2	17064	17058;17064		122.18	57.969	1	264350			32190	3531	22316	22390	32589;32590	32590					0.005505924119233896
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.8005981445312	2	588.800414	1175.58628	0.097188	5.7224E-05	0.66013	0.00038868	0.75732	0.00044591	588.8007362230186	43.68	0.51297	43.68	43.531	44.044	0					47	16	5	0	0	0	0.087861	1	17447	17447		82.241	30.905	1	1409700			32191	3531	22316	22390	32591	32591					0.005505924119233896
QYFPKAPEF	9	Unmodified	_QYFPKAPEF_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.7816772460938	2	563.782025	1125.5495	1.7489	0.00098603	0.07381	4.1613E-05	1.8228	0.0010276	564.2841474675956	41.541	0.2913	41.541	41.357	41.648	0					12	7	2	0	0	0	0.13267	1	16518	16518		71.877	29.481	1	83414			32192	1841	22317	22391	32592	32592					-0.008256594140220841
QYGGYKLA	8	Unmodified	_QYGGYKLA_					0	0	0		L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|88|1|anti-sense;chr13:43059012-43068930|126|14.91|0.21|6.12|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|22	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|88|1|anti-sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|88|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.7360534667969	2	450.23471	898.454868	-1.1861	-0.00053401	0.69226	0.00031168	-0.4938	-0.00022232	450.23492240118236	31.429	0.43763	31.429	31.225	31.663	0					30	17	3	0	0	0	0.59411	1	10408	10408		50.025	9.4519	1	378540			32193	519	22318	22392	32593	32593					0.0015782683465204173
QYGGYKLA	8	Unmodified	_QYGGYKLA_					0	0	0		L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|88|1|anti-sense;chr13:43059012-43068930|126|14.91|0.21|6.12|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|22	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|88|1|anti-sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|88|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2344665527344	2	450.23471	898.454868	-0.19423	-8.745E-05	-0.25624	-0.00011537	-0.45047	-0.00020282	450.2345552636671	31.438	0.59029	31.438	31.199	31.789	0					28	15	4	0	0	0	0.28158	1	10815	10815		88.643	8.7036	1	976160			32194	519	22318	22392	32594	32594					0.0015782683465204173
QYGSALAHF	9	Unmodified	_QYGSALAHF_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2433166503906	2	497.243067	992.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.103	1	37.103	36.603	37.603	0								0	0	0	0.11313	1	14042	14042		68.485	33.284	1				32195	6267	22319	22393	32595	32595					-0.024956722794058805
QYHAVKIP	8	Unmodified	_QYHAVKIP_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.271240234375	2	478.271627	954.528701	-1.4571	-0.00069688	0.75578	0.00036147	-0.7013	-0.00033541	478.27191898405056	32.523	0.51402	32.523	32.231	32.745	0					40	21	2	0	0	0	0.72381	1	10902	10902		30.504	3.7075	1	155550			32196	3991	22320	22394	32596	32596					0.04961794996984281
QYIKEKTQ	8	Unmodified	_QYIKEKTQ_					0	0	0			REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2864990234375	2	519.284931	1036.55531	3.3548	0.0017421	-0.13072	-6.7883E-05	3.2241	0.0016742	519.2848774512554	12.344	0.33894	12.344	12.232	12.571	0					19	10	3	0	0	0	0.66095	1	2599	2599		37.159	0	1	231830	+		32197	21007	22321	22395	32597	32597					0.03849439097643881
QYINSLGFL	9	Unmodified	_QYINSLGFL_					0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7824096679688	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.052	1	41.052	40.552	41.552	0								0	0	0	0.1633	1	16303	16303		56.721	3.7844	1		+		32198	22070	22322	22396	32598	32598					0.024863405860060084
QYIREREWNRR	11	Unmodified	_QYIREREWNRR_					0	0	0		NEXN|p.E240Nfs*8|1|0.31|ENSG00000162614|chr1:77926739-77926739|A/-|frameshift_variant;NEXN|p.I467*|2|0.39|ENSG00000162614|chr1:77935964-77935964|A/-|frameshift_variant;NEXN|p.N590Tfs*5|1|0.2|ENSG00000162614|chr1:77942566-77942566|A/-|frameshift_variant;nc|ENSG00000162614|Q0ZGT2-3|NEXN;nc|ENSG00000162614|Q0ZGT2-2|NEXN;ENSG00000162614|ENST00000334785|NEXN	NEXN|p.E240Nfs*8|1|0.31|ENSG00000162614|chr1:77926739-77926739|A/-|frameshift_variant	NEXN|p.E240Nfs*8|1|0.31|ENSG00000162614|chr1:77926739-77926739|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.6166381835938	3	535.950078	1604.82841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.985	1	39.985	39.485	40.485	0								0	0	0	0.45674	1	13414	13414		9.6461	4.76	1				32199	5478	22323	22397	32599	32599					0.05018435540591781
QYLEEAPKF	9	Unmodified	_QYLEEAPKF_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7852783203125	2	562.784764	1123.55498	1.7674	0.00099469	0.07088	3.989E-05	1.8383	0.0010346	562.7845491375666	38.258	0.29418	38.258	38.072	38.366	0					16	6	4	0	0	0	0.1424	1	15018	15018		69.628	18.292	1	252400			32200	1001	22324	22398	32600	32600					-0.0018598062220007705
QYLEQSSKL	9	Unmodified	_QYLEQSSKL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2881469726562	2	548.287671	1094.56079	0.4863	0.00026663	0.59249	0.00032486	1.0788	0.00059149	548.288008248328	29.402	0.25771	29.402	29.313	29.57	0					13	6	3	0	0	0	0.02953	1	10504	10504		109.48	32.161	1	635230			32201	6589	22325	22399	32601	32601					0.017291178894765835
QYLEQSSKL	9	Unmodified	_QYLEQSSKL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.287841796875	2	548.287671	1094.56079	1.784	0.00097812	-1.573	-0.00086245	0.21097	0.00011567	548.286886205631	29.42	0.24422	29.42	29.321	29.565	0					11	5	3	0	0	0	0.035106	1	10905	10905		104.01	24.301	1	1168500			32202	6589	22325	22399	32602	32602					0.017291178894765835
QYLEQSSKL	9	Unmodified	_QYLEQSSKL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2876586914062	2	548.287671	1094.56079	1.8669	0.0010236	-1.64	-0.00089919	0.22691	0.00012441	548.2867395353879	29.349	0.25785	29.349	29.241	29.498	0					8	5	2	0	0	0	0.095583	1	10752	10752		80.455	9.1589	1	961470			32203	6589	22325	22399	32603	32603					0.017291178894765835
QYLKLPAVR	9	Unmodified	_QYLKLPAVR_					0	0	0			REV__ENST00000510786.1_1_4:164449856-164449955:-|nuORF	REV__ENST00000510786.1_1_4:164449856-164449955:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.333251953125	2	544.334759	1086.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.528	1	14.528	14.028	15.028	0								0	0	0	0.3428	1	3634	3634		7.6903	0	1		+		32204	19870	22326	22400	32604	32604					0.11510301502266884
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.30908203125	2	592.308938	1182.60332	1.4231	0.00084293	-2.0238	-0.0011987	-0.6007	-0.0003558	592.3078266873607	39.02	0.38069	39.02	38.92	39.301	0					12	8	3	0	0	0	0.22823	1	15401	15401		60.118	17.254	1	177640			32205	29	22327	22401	32605	32605					0.019325130176866878
QYLTSVQQL	9	Unmodified	_QYLTSVQQL_					0	0	0		ENSG00000182504|ENST00000341893|CEP97;nc|ENSG00000182504|Q8IW35-2|CEP97	ENSG00000182504|ENST00000341893|CEP97	ENSG00000182504|ENST00000341893|CEP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2899780273438	2	540.290214	1078.56587	0.66585	0.00035975	0.50639	0.0002736	1.1722	0.00063335	540.2904465939379	43.605	0.22628	43.605	43.501	43.727	0					11	6	3	0	0	0	0.015496	1	17448	17448		129.42	33.231	1	76407			32206	6899	22328	22402	32606	32606					0.029734217520854145
QYMKIISSF	9	Unmodified	_QYMKIISSF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7932739257812	2	558.791535	1115.56852	1.8255	0.0010201	-0.753	-0.00042077	1.0725	0.00059931	558.7912160686545	45.086	0.21234	45.086	44.989	45.202	0					16	9	2	0	0	0	0.12239	1	18047	18047		74.255	7.8258	1	155900			32207	6249	22329	22403	32607	32607					0.015355538854009865
QYMKIISSF	9	Unmodified	_QYMKIISSF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7909545898438	2	558.791535	1115.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.069	1	45.069	44.569	45.569	0								0	0	0	0.15451	1	18054	18054		58.782	16.307	1				32208	6249	22329	22403	32608	32608					0.015355538854009865
QYMNTVVNF	9	Unmodified	_QYMNTVVNF_					0	0	0		nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2642822265625	2	558.263142	1114.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.782	1	48.782	48.282	49.282	0								0	0	0	0.0537	1	19360	19360		85.161	11.186	1				32209	11530	22330	22404	32609	32609					-0.04094493671118471
QYNNLLNIF	9	Unmodified	_QYNNLLNIF_					0	0	0			REV__nc|ENSG00000111405|P21128-3|ENDOU	REV__nc|ENSG00000111405|P21128-3|ENDOU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.2999267578125	2	569.798206	1137.58186	-1.3378	-0.00076225	1.795	0.0010228	0.4572	0.00026051	569.7993870974199	33.739	0.17979	33.739	33.668	33.848	0					9	5	2	0	0	0	0.35045	1	11866	11866		45.952	3.5558	1	119350	+		32210	13969	22331	22405	32610	32610					0.01857127988978391
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.2858276367188	2	568.285797	1134.55704	1.7606	0.0010005	-1.3548	-0.0007699	0.40585	0.00023064	568.2848107965829	22.933	0.17217	22.933	22.846	23.018	0					8	4	2	0	0	0	0.01873	1	7533	7533		120.62	71.179	1	420980			32211	799	22332	22406	32611	32611					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.2862548828125	2	568.285797	1134.55704	0.1142	6.4897E-05	0.85289	0.00048469	0.96709	0.00054958	568.2863215075387	22.665	0.13326	22.665	22.596	22.729	0					11	4	3	0	0	0	0.037924	1	6700	6700		108.09	58.646	1	231040			32212	799	22332	22406	32612	32612					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.2859497070312	2	568.285797	1134.55704	1.956	0.0011115	-1.2145	-0.00069018	0.74147	0.00042137	568.2849239624394	22.853	0.26807	22.853	22.744	23.012	0					14	5	3	0	0	0	0.00324	1	7807	7807		166.78	87.07	1	1935100			32213	799	22332	22406	32613	32613					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.2857666015625	2	568.285797	1134.55704	0.68896	0.00039152	-0.26947	-0.00015314	0.41949	0.00023839	568.2855108440083	22.742	0.10077	22.742	22.694	22.795	0					4	2	2	0	0	0	0.22837	1	6837	6837		60.972	28.16	1	199940			32214	799	22332	22406	32614	32614					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.2861938476562	2	568.285797	1134.55704	-1.2716	-0.00072264	1.9258	0.0010944	0.65419	0.00037177	568.2867029322242	22.736	0.14281	22.736	22.682	22.825	0					7	3	3	0	0	0	0.035062	1	6830	6830		87.754	36.419	1	143050			32215	799	22332	22406	32615	32615					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.2864379882812	2	568.285797	1134.55704	1.6537	0.00093979	-0.72987	-0.00041478	0.92386	0.00052501	568.2853663117371	22.832	0.31618	22.832	22.722	23.038	0					14	6	4	0	0	0	0.013878	1	7662	7662		143.11	88.385	1	1374200			32216	799	22332	22406	32616	32616					-0.004855070937082928
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;nc|ENSG00000163374|Q9H869-3|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	570.3001708984375	2	569.798206	1137.58186	1.1339	0.00064609	-0.88419	-0.00050381	0.24971	0.00014229	569.7975175794165	33.721	0.12756	33.721	33.652	33.779	0					10	5	2	0	0	0	0.047412	1	10978	10978		96.19	44.855	1	152300			32217	2988	22333	22407	32617	32617					0.018571279890011283
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;nc|ENSG00000163374|Q9H869-3|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7984619140625	2	569.798206	1137.58186	0.053774	3.0641E-05	0.24865	0.00014168	0.30242	0.00017232	569.7982853938415	33.957	0.23566	33.957	33.869	34.105	0					18	6	4	0	0	0	0.023928	1	12596	12596		115.49	115.49	1	794810			32218	2988	22333	22407	32618	32618					0.018571279890011283
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;nc|ENSG00000163374|Q9H869-3|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.7979125976562	2	569.798206	1137.58186	1.9791	0.0011277	-2.3636	-0.0013468	-0.38453	-0.0002191	569.796906998916	33.956	0.35541	33.956	33.829	34.185	0					13	8	2	0	0	0	0.12239	1	13055	13055		74.255	7.8258	1	357970			32219	2988	22333	22407	32619	32619					0.018571279890011283
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;nc|ENSG00000163374|Q9H869-3|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.7985229492188	2	569.798206	1137.58186	0.13728	7.8221E-05	0.61639	0.00035122	0.75367	0.00042944	569.7984573406445	33.96	0.28304	33.96	33.851	34.134	0					15	6	4	0	0	0	0.12239	1	13046	13046		74.255	24.719	1	342910			32220	2988	22333	22407	32620	32620					0.018571279890011283
QYPAPHPY	8	Unmodified	_QYPAPHPY_					0	0	0		ENSG00000004975|ENST00000005340|DVL2;DVL2|p.S562N|1|0.1|ENSG00000004975|chr17:7226498-7226498|C/T|missense_variant;DVL2|p.A601Qfs*80|1|0.48|ENSG00000004975|chr17:7226275-7226275|C/-|frameshift_variant	ENSG00000004975|ENST00000005340|DVL2	ENSG00000004975|ENST00000005340|DVL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7314147949219	2	486.732335	971.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.499	1	11.499	10.999	11.999	0								0	0	0	1.7419	1	2369	2369		14.664	0.88877	1				32221	949	22334	22408	32621	32621					-0.03675057308112173
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2908935546875	2	533.787641	1065.56073	1.7667	0.00094303	0.45863	0.00024481	2.2253	0.0011878	534.2900592634189	39.749	0.63074	39.749	39.456	40.086	0					70	22	4	0	0	0	0.48389	1	15631	15631		34.173	3.6689	1	277840			32222	1821	22335	22409	32622	32622					0.030571626801247476
QYQKVPVLF	9	Unmodified	_QYQKVPVLF_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.3209838867188	2	561.321317	1120.62808	1.8017	0.0010113	-1.245	-0.00069883	0.55669	0.00031248	561.3204908979327	44.229	0.33509	44.229	44.077	44.412	0					24	14	2	0	0	0	0.21116	1	17702	17702		60.294	6.9425	1	125160			32223	6453	22336	22410	32623	32623					0.07259192891069688
QYRGIILAE	9	Unmodified	_QYRGIILAE_					0	0	0		ENSG00000128346|ENST00000403305|C22orf23	ENSG00000128346|ENST00000403305|C22orf23	ENSG00000128346|ENST00000403305|C22orf23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.8018188476562	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.709	1	17.709	17.209	18.209	0								0	0	0	0.35899	1	4472	4472		23.042	1.0826	1				32224	3540	22337	22411	32624	32624					0.05861431851622001
QYRIPGLK	8	Unmodified	_QYRIPGLK_					0	0	0			REV__SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant	REV__SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7924499511719	2	487.792727	973.5709	-0.06859	-3.3458E-05	-0.25044	-0.00012216	-0.31903	-0.00015562	487.79262853777846	25.38	0.3037	25.38	25.265	25.568	0					25	11	3	0	0	0	0.70055	1	7611	7611		33.516	0	1	229700	+		32225	13308	22338	22412	32625	32625					0.0830577040536582
QYRYGEKQ	8	Unmodified	_QYRYGEKQ_					0	0	0		ENST00000442902.1_1_20:50727220-50727574:-|nuORF	ENST00000442902.1_1_20:50727220-50727574:-|nuORF	ENST00000442902.1_1_20:50727220-50727574:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2662963867188	2	536.26453	1070.51451	3.3536	0.0017984	-0.11746	-6.299E-05	3.2362	0.0017354	536.264518639358	12.721	0.09697	12.721	12.676	12.773	0					4	2	2	0	0	0	0.51384	1	2786	2786		58.782	4.0056	1	492180			32226	9592	22339	22413	32626	32626					-0.01792902221973236
QYSDINNRW	9	Unmodified	_QYSDINNRW_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	598.2785034179688	2	598.278169	1194.54179	-1.8469	-0.001105	1.4496	0.00086724	-0.39738	-0.00023774	598.7798744032424	32.906	0.19394	32.906	32.838	33.032	0					6	5	2	0	0	0	0.30951	1	11491	11491		49.442	6.5773	1	71858			32227	6458	22340	22414	32627	32627					-0.04770418681573574
QYSDINNRW	9	Unmodified	_QYSDINNRW_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	598.2788696289062	2	598.278169	1194.54179	3.1612	0.0018913	-1.6796	-0.0010049	1.4816	0.00088639	598.2766767960151	33.079	0.4901	33.079	32.892	33.382	0					22	10	3	0	0	0	0.063823	1	12554	12554		90.37	44.398	1	575070			32228	6458	22340	22414	32628	32628					-0.04770418681573574
QYSQHISLF	9	Unmodified	_QYSQHISLF_					0	0	0		NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant;NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN;ENST00000486873.2_1_2:169699570-169711975:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.782958984375	2	561.782556	1121.55056	1.7893	0.0010052	-0.92969	-0.00052228	0.85966	0.00048294	561.7822480166238	42.042	0.40507	42.042	41.942	42.347	0					25	10	4	0	0	0	0.02953	1	16740	16740		109.48	19.109	1	510740			32229	5525	22341	22415	32629	32629					-0.005354450451022785
QYSQHISLF	9	Unmodified	_QYSQHISLF_					0	0	0		NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant;NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN;ENST00000486873.2_1_2:169699570-169711975:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7822875976562	2	561.782556	1121.55056	3.4709	0.0019499	-1.3169	-0.00073979	2.154	0.0012101	561.7818975610076	42.063	0.43715	42.063	41.935	42.372	0					30	11	5	0	0	0	0.24095	1	16735	16735		56.721	5.5284	1	665640			32230	5525	22341	22415	32630	32630					-0.005354450451022785
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.548583984375	3	401.548741	1201.62439	0.94414	0.00037912	-2.6287	-0.0010555	-1.6845	-0.00067641	401.5482742891862	23.491	1.8546	23.491	23.354	25.209	0					97	43	3	0	0	0	0.47038	1	7779	7779		35.618	1.5318	1	1472100			32231	6478	22342	22416	32631	32631					0.031645231171978594
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.548583984375	3	401.548741	1201.62439	-0.60183	-0.00024167	-0.33004	-0.00013253	-0.93188	-0.00037419	401.54885955336175	23.393	1.407	23.393	23.284	24.691	0					66	28	3	0	0	0	0.41113	1	7938	7938		40.778	0	1	1812100			32232	6478	22342	22416	32632	32632					0.031645231171978594
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.5486755371094	3	401.548741	1201.62439	0.50196	0.00020156	-1.1469	-0.00046054	-0.64496	-0.00025898	401.54854694975296	23.427	0.91142	23.427	23.268	24.179	0					45	18	3	0	0	0	0.36892	1	7930	7930		44.377	0.26039	1	2025100			32233	6478	22342	22416	32633	32633					0.031645231171978594
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.290283203125	2	564.290214	1126.56587	1.2374	0.00069826	-0.78895	-0.0004452	0.44847	0.00025307	564.2899960381427	35.845	0.16146	35.845	35.775	35.936	0					11	8	2	0	0	0	0.30841	1	11746	11746		49.536	3.5841	1	70761			32234	235	22343	22417	32634	32634					0.007654217520666862
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.29052734375	2	564.290214	1126.56587	1.8895	0.0010662	-1.0659	-0.00060149	0.82361	0.00046476	564.2895387320162	36.082	0.3353	36.082	35.956	36.292	0					23	10	3	0	0	0	0.056004	1	14019	14019		93.143	10.903	1	717740			32235	235	22343	22417	32635	32635					0.007654217520666862
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.2904052734375	2	564.290214	1126.56587	-1.0614	-0.00059891	1.4261	0.00080473	0.36473	0.00020581	564.2907737876595	35.884	0.2392	35.884	35.74	35.98	0					11	9	2	0	0	0	0.27249	1	12824	12824		52.937	10.541	1	116730			32236	235	22343	22417	32636	32636					0.007654217520666862
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.29052734375	2	564.290214	1126.56587	1.7371	0.00098021	-0.9565	-0.00053974	0.78057	0.00044047	564.289532313614	36.024	0.26883	36.024	35.914	36.183	0					14	5	4	0	0	0	0.032383	1	13973	13973		106.68	24.443	1	512000			32237	235	22343	22417	32637	32637					0.007654217520666862
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.2778930664062	2	582.277638	1162.54072	-0.0097229	-5.6615E-06	0.052736	3.0707E-05	0.043013	2.5046E-05	582.2777109028362	37.733	0.25424	37.733	37.628	37.882	0					23	8	4	0	0	0	0.087861	1	14316	14316		82.241	31.048	1	709260			32238	3949	22344	22418	32638	32638					-0.03404633050490702
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.27734375	2	582.277638	1162.54072	1.4124	0.00082241	-0.86779	-0.00050529	0.54461	0.00031712	582.277095506109	37.688	0.37217	37.688	37.591	37.964	0					31	12	4	0	0	0	0.42902	1	14738	14738		39.253	4.1008	1	733280			32239	3949	22344	22418	32639	32639					-0.03404633050490702
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.2786865234375	2	582.277638	1162.54072	-1.7042	-0.0009923	2.8501	0.0016596	1.146	0.00066727	582.2793499979609	37.498	0.13829	37.498	37.446	37.584	0					15	7	3	0	0	0	0.48389	1	13417	13417		34.173	2.2177	1	122150			32240	3949	22344	22418	32640	32640					-0.03404633050490702
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.2780151367188	2	582.277638	1162.54072	1.662	0.00096774	-1.0679	-0.00062181	0.5941	0.00034593	582.2770256762511	37.648	0.25385	37.648	37.55	37.804	0					14	5	4	0	0	0	0.0792	1	14747	14747		84.916	8.1414	1	566550			32241	3949	22344	22418	32641	32641					-0.03404633050490702
QYVKRGRL	8	Unmodified	_QYVKRGRL_					0	0	0			REV__ENST00000486091.1_1_1:55203206-55207183:+|nuORF	REV__ENST00000486091.1_1_1:55203206-55207183:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.3108825683594	2	510.309075	1018.6036	1.3718	0.00070002	1.1185	0.00057076	2.4902	0.0012708	510.30982003181424	40.934	0.36639	40.934	40.748	41.115	0					15	6	3	0	0	0	0.60719	1	16261	16261		47.916	1.1492	1	158030	+		32242	17706	22345	22419	32642	32642					0.09503977528220275
QYVSAFSKL	9	Unmodified	_QYVSAFSKL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7830810546875	2	521.782025	1041.5495	1.5554	0.0008116	-0.50306	-0.00026249	1.0524	0.00054911	521.7821567783315	39.404	0.17845	39.404	39.313	39.492	0					8	6	2	0	0	0	0.2546	1	14996	14996		47.96	23.757	1	165440			32243	5782	22346	22420	32643	32643					0.030383405859993218
QYVSAFSKL	9	Unmodified	_QYVSAFSKL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7823486328125	2	521.782025	1041.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.347	1	39.347	38.847	39.847	0								0	0	0	0.1347	1	15543	15543		56.434	23.621	1				32244	5782	22346	22420	32644	32644					0.030383405859993218
QYVSCFPSHP	10	Carbamidomethyl (C)	_QYVSC(Carbamidomethyl (C))FPSHP_	QYVSC(1)FPSHP		QYVSC(48)FPSHP		0	1	0			REV__chr1:152984125-152985198|126|31.17|0.0|21.57|+|0|SPRR1A,SPRR1A|1	REV__chr1:152984125-152985198|126|31.17|0.0|21.57|+|0|SPRR1A,SPRR1A|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.2728881835938	2	611.271498	1220.52844	0.90241	0.00055162	1.1652	0.00071225	2.0676	0.0012639	611.2722524627994	31.801	0.25866	31.801	31.653	31.911	0					12	5	3	0	0	0	0.47859	1	12041	12041		47.657	47.657	1	516330	+		32245	12461	22347	22421	32645	32645	488				-0.07299992785169707
QYVTQINRL	9	Unmodified	_QYVTQINRL_					0	0	0		nc|ENSG00000124126|Q8TCU6-2|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.81689453125	2	567.81693	1133.61931	1.1713	0.00066508	-1.3772	-0.00078197	-0.20586	-0.00011689	567.8161714699837	34.157	0.088501	34.157	34.108	34.197	0					6	3	2	0	0	0	0.4966	1	11148	11148		32.812	2.4947	1	45138			32246	3345	22348	22422	32646	32646					0.05784219254610434
QYVTQINRL	9	Unmodified	_QYVTQINRL_					0	0	0		nc|ENSG00000124126|Q8TCU6-2|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.817138671875	2	567.81693	1133.61931	0.1705	9.6811E-05	0.97741	0.00055499	1.1479	0.0006518	567.8177559034816	34.387	0.36787	34.387	34.284	34.652	0					14	9	3	0	0	0	0.15163	1	12805	12805		67.494	18.052	1	207780			32247	3345	22348	22422	32647	32647					0.05784219254610434
RAAAAALPPA	10	Unmodified	_RAAAAALPPA_					0	0	0		ENST00000266671.9_1_12:76425237-76425312:-|nuORF	ENST00000266671.9_1_12:76425237-76425312:-|nuORF	ENST00000266671.9_1_12:76425237-76425312:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.7700500488281	2	454.769252	907.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.329	1	26.329	25.829	26.829	0								0	0	0	0.30545	1	9068	9068		50.025	2.1089	1				32248	8355	22349	22423	32648	32648					0.06648910854221413
RAADVEPSSPK	11	Unmodified	_RAADVEPSSPK_					0	0	0		ENSG00000198064|ENST00000697092|NPIPB13	ENSG00000198064|ENST00000697092|NPIPB13	ENSG00000198064|ENST00000697092|NPIPB13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.801513671875	2	578.801477	1155.5884	0.78109	0.0004521	-0.53769	-0.00031121	0.24341	0.00014088	578.8011770932243	26.251	0.30821	26.251	26.079	26.387	0					19	10	3	0	0	0	0.21174	1	7931	7931		72.879	7.4139	1	191050			32249	7526	22350	22424	32649	32649					0.016830211497108394
RAAERSSALR	10	Unmodified	_RAAERSSALR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8172607421875	2	558.815253	1115.61595	3.4693	0.0019387	-0.19047	-0.00010644	3.2788	0.0018322	558.8151534103628	20.319	0.41612	20.319	20.209	20.626	0					18	8	3	0	0	0	0.35046	1	6448	6448		61.691	0.71934	1	914250			32250	4171	22351	22425	32650	32650					0.06276969200598614
RAAGEPNGA	9	Unmodified	_RAAGEPNGA_					0	0	0			REV__FKBPL|p.R222Q|1|0.07|ENSG00000204315|chr6:32129116-32129116|C/T|missense_variant	REV__FKBPL|p.R222Q|1|0.07|ENSG00000204315|chr6:32129116-32129116|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.7093811035156	2	421.709391	841.404229	-1.222	-0.00051531	1.2956	0.00054638	0.073676	3.107E-05	421.7098991354849	15.239	0.080957	15.239	15.202	15.283	0					6	2	3	0	0	0	0.33044	1	3446	3446		47.657	5.2612	1	150540	+		32251	17474	22352	22426	32651	32651					-0.022817024903361016
RAAGGRRV	8	Unmodified	_RAAGGRRV_					0	0	0			REV__ENST00000322434.7_1_5:178287063-178293254:+|nuORF	REV__ENST00000322434.7_1_5:178287063-178293254:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.7581787109375	2	421.75701	841.499467	3.3904	0.0014299	0.23676	9.9857E-05	3.6272	0.0015298	421.75709738388235	13.658	0.20562	13.658	13.556	13.761	0					20	11	2	0	0	0	0.49887	1	2823	2823		60.294	60.294	1	160440	+		32252	18336	22353	22427	32652	32652					0.07237695491357954
RAAGLGRGTR	10	Unmodified	_RAAGLGRGTR_					0	0	0		ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.80078125	2	507.799406	1013.58426	2.9509	0.0014985	-0.43616	-0.00022148	2.5147	0.001277	507.7991493922512	30.705	0.21961	30.705	30.595	30.814	0					11	4	3	0	0	0	0.2978	1	11410	11410		67.494	67.494	1	1697800			32253	10934	22354	22428	32653	32653					0.07801021237332861
RAAGPVLPL	9	Unmodified	_RAAGPVLPL_					0	0	0		ENST00000358625.3_1_9:137023968-137024280:+|nuORF	ENST00000358625.3_1_9:137023968-137024280:+|nuORF	ENST00000358625.3_1_9:137023968-137024280:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.28179931640625	2	447.281995	892.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.631	1	42.631	42.131	43.131	0								0	0	0	0.25856	1	16723	16723		42.474	10.52	1				32254	8836	22355	22429	32654	32654					0.098863853766602
RAAHGIPDLA	10	Unmodified	_RAAHGIPDLA_					0	0	0		ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7821960449219	2	510.78289	1019.55123	-0.0067538	-3.4497E-06	-3.2673	-0.0016689	-3.2741	-0.0016723	510.7813849277733	44.157	0.16782	44.157	44.087	44.255	0					15	10	2	0	0	0	0.52707	1	16589	16589		42.396	1.618	1	87116			32255	5769	22356	22430	32655	32655					0.042233943946030195
RAAKPLQVNK	10	Unmodified	_RAAKPLQVNK_					0	0	0		nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3	nc|ENSG00000105053|Q8IV63-2|VRK3	nc|ENSG00000105053|Q8IV63-2|VRK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.8494262695312	2	562.848564	1123.68258	1.7844	0.0010043	-0.21443	-0.00012069	1.5699	0.00088364	562.848436764645	15.9	0.13529	15.9	15.813	15.949	0					6	3	2	0	0	0	0.49411	1	4215	4215		45.972	1.8554	1	304720			32256	2326	22357	22431	32656	32656					0.12568204762487767
RAANNQGVKF	10	Unmodified	_RAANNQGVKF_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8019409179688	2	552.799072	1103.58359	3.6548	0.0020204	0.71616	0.00039589	4.371	0.0024163	552.7993866633545	20.867	1.1622	20.867	20.709	21.871	0					58	23	4	0	0	0	0.16018	2	6687	6665;6687		84.916	8.1414	1	20303000			32257	4060	22358	22432	32657;32658	32658					0.03594181797620877
RAAPAFLK	8	Unmodified	_RAAPAFLK_					0	0	0		nc|ENSG00000134769|Q9Y4J8-6|DTNA;nc|ENSG00000134769|Q9Y4J8-11|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;DTNA|p.A558Qfs*40|1|0.28|ENSG00000134769|chr18:34875244-34875244|G/-|frameshift_variant;nc|ENSG00000134769|Q9Y4J8|DTNA;ENSG00000134769|ENST00000444659|DTNA	nc|ENSG00000134769|Q9Y4J8-6|DTNA	nc|ENSG00000134769|Q9Y4J8-6|DTNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2703857421875	2	437.268887	872.523222	2.6731	0.0011689	0.59415	0.0002598	3.2672	0.0014287	437.26925730820165	27.534	0.32161	27.534	27.424	27.746	0					15	6	4	0	0	0	0.64096	1	9877	9877		42.474	1.9018	1	1168700			32258	857	22359	22433	32659	32659					0.08186116205172311
RAAPGTLPPLL	11	Unmodified	_RAAPGTLPPLL_					0	0	0		ENST00000459862.1_1_1:205499484-205500503:+|nuORF	ENST00000459862.1_1_1:205499484-205500503:+|nuORF	ENST00000459862.1_1_1:205499484-205500503:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.3407592773438	2	553.340041	1104.66553	0.036446	2.0167E-05	1.3565	0.00075058	1.3929	0.00077075	553.3409818636296	28.423	0.2075	28.423	28.308	28.515	0					7	4	2	0	0	0	0.67983	1	10416	10416		19.997	0	1	92041			32259	9715	22360	22434	32660	32660					0.11738284156717782
RAAPTRGARF	10	Unmodified	_RAAPTRGARF_					0	0	0			REV__ENST00000488132.5_1_3:98437297-98451483:-|nuORF	REV__ENST00000488132.5_1_3:98437297-98451483:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8167724609375	2	551.815056	1101.61556	1.6262	0.00089735	1.4221	0.00078473	3.0483	0.0016821	551.8160923704456	41.13	0.11436	41.13	41.057	41.172	0					8	4	2	0	0	0	0.49411	1	16180	16180		45.972	4.5456	1	62923	+		32260	19687	22361	22435	32661	32661					0.06881594271408176
RAAQRTVTRGK	11	Unmodified	_RAAQRTVTRGK_					0	0	0		PHF21A|p.P652Lfs*104|4|0.42|ENSG00000135365|chr11:45934056-45934056|G/-|frameshift_variant	PHF21A|p.P652Lfs*104|4|0.42|ENSG00000135365|chr11:45934056-45934056|G/-|frameshift_variant	PHF21A|p.P652Lfs*104|4|0.42|ENSG00000135365|chr11:45934056-45934056|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.3718872070312	2	622.370727	1242.7269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.619	1	29.619	29.119	30.119	0								0	0	0	0.43892	1	10987	10987		19.263	0	1				32261	11928	22362	22436	32662	32662					0.11524608908689515
RAAQVASLQI	10	Unmodified	_RAAQVASLQI_					0	0	0			REV__KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant	REV__KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.8119506835938	2	528.811648	1055.60874	2.2441	0.0011867	-1.5108	-0.00079894	0.73323	0.00038774	528.8106653390456	15.716	0.33781	15.716	15.571	15.909	0					13	8	3	0	0	0	0.62235	1	4124	4124		31.53	0	1	202710	+		32262	17078	22363	22437	32663	32663					0.08316236600194316
RAARGKLAR	9	Unmodified	_RAARGKLAR_					0	0	0			REV__SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant	REV__SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.8207702636719	2	499.820141	997.62573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.051	1	32.051	31.551	32.551	0								0	0	0	0.3304	1	10672	10672		29.15	3.6994	1		+		32263	13525	22364	22438	32664	32664					0.12682201996642561
RAASLLAQL	9	Unmodified	_RAASLLAQL_					0	0	0		ENST00000539361.1_1_11:61551728-61551962:+|nuORF	ENST00000539361.1_1_11:61551728-61551962:+|nuORF	ENST00000539361.1_1_11:61551728-61551962:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.78997802734375	2	471.790184	941.565815	-0.12363	-5.8329E-05	-0.53708	-0.00025339	-0.66071	-0.00031172	471.7899657009011	23.421	0.26619	23.421	23.312	23.578	0					9	5	3	0	0	0	0.087861	1	8078	8078		82.241	2.5279	1	636280			32264	10521	22365	22439	32665	32665					0.0926946654275298
RAASPGPSWEA	11	Unmodified	_RAASPGPSWEA_					0	0	0		EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant;nc|ENSG00000183317|Q5JZY3-3|EPHA10;ENSG00000183317|ENST00000373048|EPHA10;ENST00000446149.6_1_1:38181546-38201012:-|nuORF	EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant	EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.8524475097656	3	376.8526	1127.53597	0.23709	8.9346E-05	-0.52875	-0.00019926	-0.29166	-0.00010991	376.852418514299	26.887	0.16666	26.887	26.778	26.944	0					6	3	2	0	0	0	0.76133	1	9688	9688		21.78	0.94327	1	184490			32265	6953	22366	22440	32666	32666					-0.02269517193235515
RAASRESRAT	10	Unmodified	_RAASRESRAT_					0	0	0			REV__ENSG00000069020|ENST00000403625|MAST4	REV__ENSG00000069020|ENST00000403625|MAST4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8695983886719	3	368.867132	1103.57957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.181	1	48.181	47.681	48.681	0								0	0	0	0.3998	1	19164	19164		30.569	2.4874	1		+		32266	13159	22367	22441	32667	32667					0.0319209230387969
RAAYEGSVAK	10	Unmodified	_RAAYEGSVAK_					0	0	0		CDAN1|p.T563Pfs*29|1|0.16|ENSG00000140326|chr15:42731673-42731673|G/-|frameshift_variant;nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	CDAN1|p.T563Pfs*29|1|0.16|ENSG00000140326|chr15:42731673-42731673|G/-|frameshift_variant	CDAN1|p.T563Pfs*29|1|0.16|ENSG00000140326|chr15:42731673-42731673|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2803344726562	2	526.28018	1050.54581	0.10019	5.2729E-05	0.69704	0.00036684	0.79723	0.00041957	526.2805026688054	32.709	0.29335	32.709	32.611	32.904	0					11	7	3	0	0	0	0.2538	1	12042	12042		72.879	23.343	1	321370			32267	433	22368	22442	32668	32668					0.022556708121328484
RACETRVKQ	9	Carbamidomethyl (C)	_RAC(Carbamidomethyl (C))ETRVKQ_	RAC(1)ETRVKQ		RAC(53)ETRVKQ		0	1	0			REV__SP110|p.A338V|1|0.17|ENSG00000135899|chr2:230202614-230202614|G/A|missense_variant	REV__SP110|p.A338V|1|0.17|ENSG00000135899|chr2:230202614-230202614|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.305908203125	2	574.303664	1146.59277	1.0445	0.00059985	1.7063	0.00097991	2.7507	0.0015798	574.3053482031881	21.838	0.14067	21.838	21.737	21.878	0					10	4	3	0	0	0	0.27249	1	6082	6082		52.937	6.9645	1	135680	+		32268	21593	22369	22443	32669	32669	742				0.02534207091616736
RACLVVSLC	9	Unmodified	_RACLVVSLC_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2593994140625	2	482.259348	962.504143	0.56292	0.00027147	-0.71443	-0.00034454	-0.15151	-7.3068E-05	482.2591242695474	14.5	0.13326	14.5	14.456	14.589	0					8	3	3	0	0	0	0.35045	1	3553	3553		45.952	9.5052	1	419870			32269	6046	22370	22444	32670	32670					0.02139075527611567
RADLQRALL	9	Unmodified	_RADLQRALL_					0	0	0			REV__RDH16|p.R278Vfs*17|1|0.25|ENSG00000139547|chr12:56952151-56952151|G/-|frameshift_variant	REV__RDH16|p.R278Vfs*17|1|0.25|ENSG00000139547|chr12:56952151-56952151|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.3198852539062	2	528.31964	1054.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.467	1	18.467	17.967	18.967	0								0	0	0	0.28191	1	4598	4598		39.253	1.4413	1		+		32270	12953	22371	22445	32671	32671					0.09959942837076596
RADPQRAV	8	Unmodified	_RADPQRAV_					0	0	0		nc|ENSG00000168061|A6NKF1-2|SAC3D1;ENST00000530213.5_1_11:64808530-64811777:+|nuORF;SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7541198730469	2	456.754133	911.493713	-0.14561	-6.6509E-05	-0.50625	-0.00023123	-0.65186	-0.00029774	456.7539793341133	16.339	0.21708	16.339	16.23	16.447	0					7	4	2	0	0	0	0.72381	1	4662	4662		30.504	2.2494	1	148120			32271	6053	22372	22446	32672	32672					0.03442552189039816
RADRLLAA	8	Unmodified	_RADRLLAA_					0	0	0		nc|ENSG00000148572|Q96F24-2|NRBF2;ENSG00000148572|ENST00000277746|NRBF2	nc|ENSG00000148572|Q96F24-2|NRBF2	nc|ENSG00000148572|Q96F24-2|NRBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2668151855469	2	443.266876	884.519199	-0.49635	-0.00022001	0.15596	6.9132E-05	-0.34039	-0.00015088	443.2669552238265	21.548	0.31789	21.548	21.437	21.755	0					15	6	3	0	0	0	0.58597	1	7042	7042		51.335	1.8939	1	666660			32272	4840	22373	22447	32673	32673					0.07232026711460549
RAEEEIQK	8	Unmodified	_RAEEEIQK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7640686035156	2	501.764363	1001.51417	-0.5549	-0.00027843	0.88624	0.00044469	0.33134	0.00016625	501.76445428012966	16.504	0.21474	16.504	16.351	16.565	0					11	4	4	0	0	0	0.28427	1	4596	4596		87.754	2.8388	1	387530			32273	3860	22374	22448	32674	32674					0.013476780581981984
RAELGSPWGP	10	Unmodified	_RAELGSPWGP_					0	0	0		ENST00000450736.6_1_17:73085110-73089847:+|nuORF	ENST00000450736.6_1_17:73085110-73089847:+|nuORF	ENST00000450736.6_1_17:73085110-73089847:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2765502929688	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.48	1	21.48	20.98	21.98	0								0	0	0	0.37129	1	7130	7130		39.253	3.6345	1				32274	9648	22375	22449	32675	32675					0.0037168815770201036
RAEPHAAG	8	Unmodified	_RAEPHAAG_					0	0	0			REV__ENST00000359276.8_1_X:16720981-16730725:-|nuORF	REV__ENST00000359276.8_1_X:16720981-16730725:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.7062683105469	2	404.706651	807.39875	0.65509	0.00026512	-1.8895	-0.00076471	-1.2345	-0.00049959	404.70598728298944	21.541	0.15187	21.541	21.444	21.596	0					5	3	2	0	0	0	0.72892	1	6872	6872		29.842	0	1	69300	+		32275	18546	22376	22450	32676	32676					-0.012653812821554311
RAERSRSPL	9	Unmodified	_RAERSRSPL_					0	0	0		ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3053588867188	2	536.304521	1070.59449	3.3523	0.0017979	-0.28024	-0.0001503	3.0721	0.0016476	536.3043269976771	49.481	0.50575	49.481	49.305	49.81	0					55	23	3	0	0	0	0.22377	1	19522	19522		58.782	58.782	1	504380			32276	3712	22377	22451	32677	32677					0.06201584171913055
RAETVAKL	8	Unmodified	_RAETVAKL_					0	0	0		ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2689208984375	2	444.269084	886.523616	0.21839	9.7025E-05	-0.42636	-0.00018942	-0.20796	-9.2392E-05	444.2688849762968	19.16	0.10881	19.16	19.095	19.204	0					6	3	2	0	0	0	0.61925	1	4906	4906		45.972	5.1941	1	98822			32277	6666	22378	22452	32678	32678					0.0758149113436275
RAFASSEL	8	Unmodified	_RAFASSEL_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.7297058105469	2	440.729792	879.445031	-0.56055	-0.00024705	0.71483	0.00031505	0.15428	6.7996E-05	440.7300058066217	23.998	0.29905	23.998	23.794	24.093	0					11	7	2	0	0	0	0.75243	1	7406	7406		26.796	0	1	83770			32278	6263	22379	22453	32679	32679					0.00048638829287028784
RAFDSAVAK	9	Unmodified	_RAFDSAVAK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7641296386719	2	482.764166	963.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.703	1	19.703	19.203	20.203	0								0	0	0	0.33029	1	5148	5148		29.17	1.2878	1				32279	3774	22380	22454	32680	32680					0.030563031289943865
RAFKTFSAL	9	Unmodified	_RAFKTFSAL_					0	0	0		RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant;ENSG00000183638|ENST00000382483|RP1L1;RP1L1|p.V381Cfs*109|1|0.28|ENSG00000183638|chr8:10612957-10612957|C/-|frameshift_variant;nc|ENSG00000183638|Q8IWN7-2|RP1L1	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7986450195312	2	520.798009	1039.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.701	1	11.701	11.201	12.201	0								0	0	0	0.40728	1	2275	2275		7.1934	0	1				32280	6973	22381	22455	32681	32681					0.06325753059809358
RAFLIFHV	8	Unmodified	_RAFLIFHV_					0	0	0			REV__nc|ENSG00000182208|Q70IA6|MOB2	REV__nc|ENSG00000182208|Q70IA6|MOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.8005676269531	2	501.797812	1001.58107	3.5133	0.001763	2.2544	0.0011313	5.7677	0.0028942	501.79885154121354	25.905	0.24397	25.905	25.771	26.015	0					6	4	2	0	0	0	0.74117	1	8091	8091		28.254	28.254	1	192210	+		32281	16873	22382	22456	32682	32682					0.08034378130605546
RAFLPESGF	9	Unmodified	_RAFLPESGF_					0	0	0		ENST00000589338.5_1_19:55853250-55854220:+|nuORF;ENSG00000133247|ENST00000255613|KMT5C	ENST00000589338.5_1_19:55853250-55854220:+|nuORF	ENST00000589338.5_1_19:55853250-55854220:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.267822265625	2	512.266542	1022.51853	3.1304	0.0016036	-0.175	-8.9648E-05	2.9554	0.0015139	512.2665532640722	41.554	0.57487	41.554	41.343	41.918	0					38	15	4	0	0	0	0.37197	1	16523	16523		44.117	44.117	1	638240			32282	3846	22383	22457	32683	32683					0.008171872717639417
RAGAQAGPLLP	11	Unmodified	_RAGAQAGPLLP_					0	0	0			REV__KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	REV__KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.805419921875	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.31	1	13.31	12.81	13.81	0								0	0	0	0.26434	1	3211	3211		56.721	7.2795	1		+		32283	20776	22384	22458	32684	32684					0.07536253945750104
RAGEWKLGA	9	Unmodified	_RAGEWKLGA_					0	0	0		SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant	SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant	SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.27130126953125	2	494.272158	986.529764	-0.067197	-3.3213E-05	-1.1004	-0.00054392	-1.1676	-0.00057713	494.27158870587874	30.61	0.14924	30.61	30.528	30.677	0					11	6	3	0	0	0	0.60749	1	9769	9769		20.947	0.4651	1	99782			32284	22378	22385	22459	32685	32685					0.03596009365901409
RAGGADPH	8	Unmodified	_RAGGADPH_					0	0	0			REV__ENST00000544519.1_3_11:73022853-73058028:+|nuORF	REV__ENST00000544519.1_3_11:73022853-73058028:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	390.6903381347656	2	390.691001	779.367449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.347	1	15.347	14.847	15.847	0								0	0	0	1.7419	1	3944	3944		33.516	0	1		+		32285	20156	22386	22460	32686	32686					-0.03105954316242787
RAGGKRNAF	9	Unmodified	_RAGGKRNAF_					0	0	0		ENST00000395029.5_1_5:133480490-133481991:+|nuORF	ENST00000395029.5_1_5:133480490-133481991:+|nuORF	ENST00000395029.5_1_5:133480490-133481991:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7767028808594	2	488.7754	975.536246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.345	1	36.345	35.845	36.845	0								0	0	0	0.28164	1	13008	13008		38.806	8.3025	1				32286	9188	22387	22461	32687	32687					0.04749947317270653
RAGGRRVI	8	Unmodified	_RAGGRRVI_					0	0	0		ENST00000260402.7_1_15:40600014-40600113:-|nuORF	ENST00000260402.7_1_15:40600014-40600113:-|nuORF	ENST00000260402.7_1_15:40600014-40600113:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.781982421875	2	442.780485	883.546417	2.6121	0.0011566	0.1476	6.5357E-05	2.7597	0.001222	442.7805542599176	43.208	0.23295	43.208	43.096	43.329	0					12	8	2	0	0	0	0.64096	1	17277	17277		42.474	0	1	109470			32287	8287	22388	22462	32688	32688					0.09998555042500357
RAGGSGRQAQ	10	Unmodified	_RAGGSGRQAQ_					0	0	0			REV__ENSG00000267221|ENST00000587304|C17orf113	REV__ENSG00000267221|ENST00000587304|C17orf113	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.25872802734375	2	494.257571	986.500589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.029	1	15.029	14.529	15.529	0								0	0	0	0.37602	1	4027	4027		37.812	1.3648	1		+		32288	17796	22389	22463	32689	32689					0.00679865069605512
RAGGVMKIVR	10	Oxidation (M)	_RAGGVM(Oxidation (M))KIVR_		RAGGVM(1)KIVR		RAGGVM(66)KIVR	0	0	1		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;ENST00000545453.5_2_13:73355107-73355970:-|nuORF;nc|ENSG00000083520|Q9Y2L1-2|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENST00000545453.5_2_13:73355107-73355970:-|nuORF	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8297729492188	2	551.829317	1101.64408	1.6194	0.00089364	-0.90986	-0.00050209	0.70955	0.00039155	551.8290552529943	16.222	0.46704	16.222	16.112	16.58	0					21	9	4	0	0	0	0.30737	1	4606	4606		66.429	10.925	1	970700			32289	791;10577	22390	22464	32690	32690		36			0.09732575856332915
RAGLPCQDLE	10	Unmodified	_RAGLPCQDLE_					0	0	0		nc|ENSG00000073578|P31040-3|SDHA;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA;ENST00000505555.5_1_5:218470-251793:+|nuORF;ENST00000429897.5_1_3:195393072-195404601:+|nuORF;ENST00000427841.5_1_3:195698311-195709045:-|nuORF;ENST00000504824.5_1_5:218488-235547:+|nuORF	nc|ENSG00000073578|P31040-3|SDHA	nc|ENSG00000073578|P31040-3|SDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2719116210938	2	551.271498	1100.52844	0.7	0.00038589	-0.39041	-0.00021522	0.30959	0.00017067	551.2713893514704	25.221	0.32081	25.221	25.11	25.431	0					14	6	3	0	0	0	0.31613	1	8791	8791		65.465	4.4934	1	2000700			32290	1512	22391	22465	32691	32691					-0.01779992785191098
RAGLPPELVK	10	Unmodified	_RAGLPPELVK_					0	0	0			REV__nc|ENSG00000117400|P40238-2|MPL	REV__nc|ENSG00000117400|P40238-2|MPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.3325805664062	2	540.332216	1078.64988	1.8719	0.0010114	-0.64824	-0.00035027	1.2236	0.00066115	540.3319382718169	18.978	0.090591	18.978	18.903	18.993	0					4	2	2	0	0	0	0.33468	1	5640	5640		60.118	8.9256	1	52350	+		32291	14192	22392	22466	32692	32692					0.11369997639667417
RAGLPRLPPT	10	Unmodified	_RAGLPRLPPT_					0	0	0			REV__ENST00000378617.3_3_9:35096152-35096341:-|nuORF	REV__ENST00000378617.3_3_9:35096152-35096341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.3302612304688	2	539.330008	1076.64546	1.0167	0.00054834	-0.46838	-0.00025261	0.54832	0.00029573	539.3297313656237	21.107	0.38442	21.107	21.021	21.406	0					21	8	4	0	0	0	0.5155	1	6052	6052		47.657	12.039	1	572410	+		32292	18747	22393	22467	32693	32693					0.11020533216742479
RAGPAGPR	8	Unmodified	_RAGPAGPR_					0	0	0		ENST00000321617.7_1_17:73510284-73511587:-|nuORF	ENST00000321617.7_1_17:73510284-73511587:-|nuORF	ENST00000321617.7_1_17:73510284-73511587:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2251281738281	2	391.225011	780.435469	0.43529	0.0001703	0.0022808	8.9232E-07	0.43757	0.00017119	391.224943048305	44.416	0.88712	44.416	43.892	44.779	0					59	48	2	0	0	0	0.79882	1	17251	17251		19.36	0	1	80862			32293	8620	22394	22468	32694	32694					0.03646915334422829
RAGPRPAG	8	Unmodified	_RAGPRPAG_					0	0	0			REV__UBE2O|p.T8Rfs*128|1|0.18|ENSG00000175931|chr17:76453121-76453121|G/-|frameshift_variant	REV__UBE2O|p.T8Rfs*128|1|0.18|ENSG00000175931|chr17:76453121-76453121|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.2249450683594	2	391.225011	780.435469	-0.14413	-5.6388E-05	0.070262	2.7488E-05	-0.073871	-2.89E-05	391.2248198638525	51.637	0.21429	51.637	51.529	51.743	0					18	13	2	0	0	0	0.7914	1	18406	18406		14.664	0	1	63363	+		32294	22254	22395	22469	32695	32695					0.03646915334422829
RAGPSHRPN	9	Unmodified	_RAGPSHRPN_					0	0	0		ENST00000581381.5_1_17:27104157-27169785:-|nuORF;ENST00000581229.5_1_17:27093700-27169785:-|nuORF	ENST00000581381.5_1_17:27104157-27169785:-|nuORF	ENST00000581381.5_1_17:27104157-27169785:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2638854980469	2	496.262656	990.51076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.995	1	24.995	24.495	25.495	0								0	0	0	0.30504	1	8816	8816		34.173	2.6427	1				32295	10872	22396	22470	32696	32696					0.015124727948546024
RAGRDEGEPHQ	11	Unmodified	_RAGRDEGEPHQ_					0	0	0			REV__ENST00000252242.8_1_12:52913550-52913679:-|nuORF	REV__ENST00000252242.8_1_12:52913550-52913679:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.2957153320312	2	626.294882	1250.57521	1.0216	0.00063981	0.25081	0.00015708	1.2724	0.00079689	626.2950250842757	14.102	0.097272	14.102	14.046	14.144	0					4	2	2	0	0	0	0.59204	1	3369	3369		37.508	37.508	1	770520	+		32296	17968	22397	22471	32697	32697					-0.040054169096720216
RAGVFASSLH	10	Unmodified	_RAGVFASSLH_					0	0	0		ENST00000467799.6_1_10:98031253-98031343:-|nuORF	ENST00000467799.6_1_10:98031253-98031343:-|nuORF	ENST00000467799.6_1_10:98031253-98031343:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7836303710938	2	522.78289	1043.55123	1.0876	0.00056857	-0.19799	-0.00010351	0.8896	0.00046507	522.7826694082199	27.301	0.21947	27.301	27.208	27.427	0					7	5	2	0	0	0	0.55603	1	8901	8901		39.253	1.4413	1	152910			32297	9803	22398	22472	32698	32698					0.031193943946163927
RAGVTTPAP	9	Unmodified	_RAGVTTPAP_					0	0	0		ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.24530029296875	2	435.245609	868.476666	-0.61031	-0.00026563	0.36668	0.0001596	-0.24363	-0.00010604	435.245743485861	24.951	0.59183	24.951	24.506	25.098	0					32	13	3	0	0	0	0.54267	1	7916	7916		27.882	2.4321	1	692750			32298	5208	22399	22473	32699	32699					0.037166315832337204
RAGWIAER	8	Unmodified	_RAGWIAER_					0	0	0		ENST00000322030.12_1_9:131451518-131451581:+|nuORF	ENST00000322030.12_1_9:131451518-131451581:+|nuORF	ENST00000322030.12_1_9:131451518-131451581:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7637023925781	2	479.764501	957.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.293	1	21.293	20.793	21.793	0								0	0	0	1.7419	1	6147	6147		66.429	9.7082	1				32299	8622	22400	22474	32700	32700					0.033991425687077026
RAHRPSRVQ	9	Unmodified	_RAHRPSRVQ_					0	0	0		ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	369.5487365722656	3	369.547846	1105.62171	3.5613	0.0013161	-1.2436	-0.00045957	2.3177	0.00085651	369.547356375414	17.54	0.084995	17.54	17.505	17.59	0					4	2	2	0	0	0	0.49718	1	4424	4424		32.751	1.2207	1	85300			32300	4029	22401	22475	32701	32701					0.07312112502950185
RAHVAALGG	9	Unmodified	_RAHVAALGG_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.2455139160156	2	426.245944	850.477334	2.4392	0.0010397	-2.8595	-0.0012189	-0.42034	-0.00017917	426.24460477117333	49.104	0.15773	49.104	49.02	49.178	0					13	9	2	0	0	0	0.61124	1	19453	19453		20.482	1.1219	1	52894			32301	2694	22402	22476	32702	32702					0.046114710229517186
RAHWNRYL	8	Unmodified	_RAHWNRYL_					0	0	0			REV__CLSTN1|p.R776L|1|0.16|ENSG00000171603|chr1:9733501-9733501|C/A|missense_variant	REV__CLSTN1|p.R776L|1|0.16|ENSG00000171603|chr1:9733501-9733501|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2990112304688	2	558.296499	1114.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.718	1	46.718	46.218	47.218	0								0	0	0	1.7419	1	18687	18687		33.516	0	1		+		32302	12516	22403	22477	32703	32703					0.025739227256508457
RAIGSPPKK	9	Unmodified	_RAIGSPPKK_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.29766845703125	2	477.298176	952.581799	-0.11769	-5.6173E-05	-0.78728	-0.00037577	-0.90497	-0.00043194	477.29773638524904	23.636	0.26677	23.636	23.412	23.679	0					9	5	2	0	0	0	0.48389	1	8178	8178		34.173	0	1	120430	+		32303	14742	22404	22478	32704	32704					0.10361172779653316
RAITYQIAK	9	Unmodified	_RAITYQIAK_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.3169555664062	2	532.316566	1062.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.003	1	24.003	23.503	24.503	0								0	0	0	0.1568	1	8025	8025		60.118	10.677	1				32304	3790	22405	22479	32705	32705					0.0897742460556401
RAKIFRRD	8	Unmodified	_RAKIFRRD_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3197021484375	2	531.319974	1060.6254	0.34551	0.00018358	-0.0076994	-4.0909E-06	0.33781	0.00017949	531.3199663265295	53.48	0.21336	53.48	53.39	53.604	0					16	13	2	0	0	0	0.79719	1	19537	19537		18.324	0.062328	1	58165			32305	3220	22406	22480	32706	32706					0.09750782276796599
RAKKRIEMA	9	Unmodified	_RAKKRIEMA_					0	0	0			REV__IARS2|p.F187S|1|0.38|ENSG00000067704|chr1:220102138-220102138|T/C|missense_variant	REV__IARS2|p.F187S|1|0.38|ENSG00000067704|chr1:220102138-220102138|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.8299560546875	2	551.829317	1101.64408	1.8172	0.0010028	-0.68921	-0.00038033	1.128	0.00062247	551.8290641210759	16.191	0.51958	16.191	16.08	16.6	0					16	10	3	0	0	0	0.28897	1	4444	4444		44.117	0	1	982250	+		32306	13141	22407	22481	32707	32707					0.09732575856355652
RAKLVEQVK	9	Unmodified	_RAKLVEQVK_					0	0	0			REV__GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant	REV__GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.5606689453125	3	357.560869	1069.66078	0.87343	0.00031231	-0.619	-0.00022133	0.25443	9.0975E-05	357.56068822105726	18.095	0.22873	18.095	18.009	18.237	0					9	5	3	0	0	0	0.1115	1	5223	5223		72.879	0	1	214810	+		32307	13227	22408	22482	32708	32708					0.12873400013927494
RAKPEGAL	8	Unmodified	_RAKPEGAL_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.2484130859375	2	421.248152	840.481751	-1.2441	-0.00052406	1.0283	0.00043317	-0.21576	-9.0889E-05	421.24853739904614	30.39	0.34769	30.39	30.247	30.595	0					16	11	2	0	0	0	0.63077	1	9968	9968		44.117	1.7207	1	190840			32308	3144	22409	22483	32709	32709					0.055129354458472335
RAKRPGIY	8	Unmodified	_RAKRPGIY_					0	0	0		ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.78985595703125	2	480.790518	959.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.289	1	29.289	28.789	29.789	0								0	0	0	1.7419	1	10829	10829		28.254	4.7316	1				32309	2001	22410	22484	32710	32710					0.085083059824683
RAKTPVTLKQ	10	Unmodified	_RAKTPVTLKQ_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;TMPO|p.L427Cfs*13|1|0.4|ENSG00000120802|chr12:98547767-98547767|T/-|frameshift_variant;TMPO|p.R409Tfs*36|1|0.06|ENSG00000120802|chr12:98547707-98547708|-/A|frameshift_variant;TMPO|p.L427Ffs*18|1|0.28|ENSG00000120802|chr12:98547766-98547767|-/T|frameshift_variant;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.3557739257812	2	571.356222	1140.69789	-0.23617	-0.00013494	0.20682	0.00011817	-0.029352	-1.677E-05	571.3561320972199	25.964	0.16709	25.964	25.832	26	0					5	3	2	0	0	0	0.59277	1	8112	8112		35.152	2.3396	1	91956			32310	3194	22411	22485	32711	32711					0.13317071559686156
RAKVEPSLR	9	Unmodified	_RAKVEPSLR_					0	0	0			REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF;REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3201293945312	2	528.31964	1054.62473	0.91879	0.00048541	-0.040066	-2.1168E-05	0.87872	0.00046425	528.3197014477979	18.669	0.16727	18.669	18.561	18.728	0					5	3	2	0	0	0	0.31937	1	5784	5784		41.427	0	1	244370	+		32311	20372;13668	22412	22486	32712	32712					0.09959942837076596
RALAAVRE	8	Unmodified	_RALAAVRE_					0	0	0		nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2674865722656	2	443.266876	884.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.316	1	21.316	20.816	21.816	0								0	0	0	1.7419	1	5855	5855		60.972	0	1				32312	8134	22413	22487	32713	32713					0.07232026711460549
RALAQRLKAA	10	Unmodified	_RALAQRLKAA_					0	0	0			REV__CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	REV__CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.3491821289062	2	549.348732	1096.68291	1.8379	0.0010096	-1.3546	-0.00074413	0.4833	0.0002655	549.3478547826394	13.385	0.10156	13.385	13.336	13.437	0					4	2	2	0	0	0	0.70877	1	3108	3108		20.947	6.8098	1	88869	+		32313	12363	22414	22488	32714	32714					0.13843624482365158
RALATCHALS	10	Unmodified	_RALATCHALS_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7771606445312	2	521.776751	1041.53895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.51	1	12.51	12.01	13.01	0								0	0	0	0.4201	1	2430	2430		10.866	2.0432	1				32314	5311	22415	22489	32715	32715					0.01984034659903955
RALFDAGIR	9	Unmodified	_RALFDAGIR_					0	0	0			REV__nc|ENSG00000120053|P17174-2|GOT1	REV__nc|ENSG00000120053|P17174-2|GOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7934265136719	2	509.793258	1017.57196	-0.4759	-0.00024261	1.2852	0.00065519	0.80931	0.00041258	509.79364969905157	24.334	0.62308	24.334	24.089	24.712	0					40	20	3	0	0	0	0.30841	1	7431	7431		49.536	1.6204	1	538560	+		32315	14267	22416	22490	32716	32716					0.06387984774278266
RALLGCAKAES	11	Unmodified	_RALLGCAKAES_					0	0	0		nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	nc|ENSG00000072310|P36956-3|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.8038940429688	2	559.802965	1117.59138	1.7869	0.0010003	-0.34311	-0.00019208	1.4438	0.00080825	559.8027692436607	31.429	0.4526	31.429	31.216	31.668	0					32	10	4	0	0	0	0.3865	1	11842	11842		52.937	1.6012	1	2132400			32316	1489	22417	22491	32717	32717					0.037285730028543185
RALLILDGL	9	Unmodified	_RALLILDGL_					0	0	0		nc|ENSG00000167984|Q7RTR2-2|NLRC3;nc|ENSG00000167984|Q7RTR2-3|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3	nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-2|NLRC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.3149108886719	2	492.316035	982.617516	-0.16676	-8.2098E-05	-0.33607	-0.00016545	-0.50283	-0.00024755	492.3157882476196	33.341	0.16977	33.341	33.272	33.442	0					10	6	2	0	0	0	0.32741	1	10819	10819		47.916	1.9636	1	176990			32317	11634	22418	22492	32718	32718					0.12551210236654242
RALQCLFYL	9	Unmodified	_RALQCLFYL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.8065795898438	2	563.807519	1125.60049	0.11308	6.3755E-05	-2.1145	-0.0011921	-2.0014	-0.0011284	563.8067058294082	21.55	0.16737	21.55	21.441	21.608	0					5	3	2	0	0	0	0.56424	1	7172	7172		33.516	7.9415	1	590450			32318	7017	22419	22493	32719	32719					0.042709663592177094
RALQQPLE	8	Unmodified	_RALQQPLE_					0	0	0		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21549679-21554039:+|nuORF;ENST00000554514.1_1_14:21549058-21555515:+|nuORF;nc|ENSG00000165801|Q8TER5-2|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7716064453125	2	477.771991	953.529429	-0.32918	-0.00015727	-0.8489	-0.00040558	-1.1781	-0.00056285	477.77145872421727	26.926	0.33039	26.926	26.734	27.064	0					18	8	3	0	0	0	0.72381	1	8707	8707		30.504	0	1	100240			32319	218	22420	22494	32720	32720					0.0508058964603606
RALYDLLIAA	10	Unmodified	_RALYDLLIAA_					0	0	0		TTC28|p.P1403A|1|0.32|ENSG00000100154|chr22:28014259-28014259|G/C|missense_variant	TTC28|p.P1403A|1|0.32|ENSG00000100154|chr22:28014259-28014259|G/C|missense_variant	TTC28|p.P1403A|1|0.32|ENSG00000100154|chr22:28014259-28014259|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.8324584960938	2	559.832049	1117.64954	1.7962	0.0010056	-1.2611	-0.00070598	0.53517	0.00029961	559.831285070494	36.445	0.12662	36.445	36.38	36.507	0					5	3	2	0	0	0	0.66185	1	13768	13768		26.693	1.2427	1	100240			32320	23075	22421	22495	32721	32721					0.0954257791981945
RAMILWNP	8	Unmodified	_RAMILWNP_					0	0	0			REV__ENST00000392876.7_1_12:104187029-104187729:-|nuORF	REV__ENST00000392876.7_1_12:104187029-104187729:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.77459716796875	2	500.77348	999.532406	0.92127	0.00046135	2.0597	0.0010315	2.981	0.0014928	500.77422939605117	33.528	0.47775	33.528	33.176	33.654	0					27	11	5	0	0	0	0.60719	1	12845	12845		47.916	7.343	1	1535000	+		32321	18837	22422	22496	32722	32722					0.03262141499192239
RAMVIELSDK	10	Unmodified	_RAMVIELSDK_					0	0	0			REV__ENST00000560451.5_1_15:91463647-91463971:+|nuORF	REV__ENST00000560451.5_1_15:91463647-91463971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.8813171386719	3	387.881391	1160.62234	0.24528	9.5138E-05	-0.25522	-9.8995E-05	-0.0099438	-3.857E-06	387.8814622329365	30.893	0.12695	30.893	30.805	30.932	0					5	3	2	0	0	0	0.70967	1	10579	10579		20.837	0	1	32629	+		32322	20284	22423	22497	32723	32723					0.048457263170803344
RANHIPMV	8	Unmodified	_RANHIPMV_					0	0	0		ENST00000603219.1_1_5:99387445-99387523:-|nuORF	ENST00000603219.1_1_5:99387445-99387523:-|nuORF	ENST00000603219.1_1_5:99387445-99387523:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.255615234375	2	469.255454	936.496355	-0.98357	-0.00046155	1.1047	0.0005184	0.12116	5.6856E-05	469.2559491149654	14.209	0.15907	14.209	14.058	14.217	0					6	3	2	0	0	0	0.79176	1	3622	3622		21.702	2.3424	1	280650			32323	11053	22424	22498	32724	32724					0.025566843223487012
RANVAVVSGAP	11	Unmodified	_RANVAVVSGAP_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000522843.5_1_8:59477592-59488665:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7957763671875	2	520.795998	1039.57744	1.4125	0.00073562	-0.88714	-0.00046202	0.52535	0.0002736	520.7955740830495	24.617	0.1146	24.617	24.562	24.677	0					4	2	2	0	0	0	0.56817	1	7715	7715		39.253	2.0937	1	47104			32324	4177	22425	22499	32725	32725					0.05923663566090909
RAPAGGSL	8	Unmodified	_RAPAGGSL_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.7060546875	2	364.70612	727.397687	0.47602	0.00017361	-0.4673	-0.00017043	0.0087202	3.1803E-06	364.70589609929954	19.166	0.62269	19.166	18.993	19.616	0					35	14	3	0	0	0	0.3961	1	5699	5699		71.296	0	1	1222500			32325	1195	22426	22500	32726	32726					0.023084043489348005
RAPAGGSL	8	Unmodified	_RAPAGGSL_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.7060546875	2	364.70612	727.397687	0.48372	0.00017641	-0.43239	-0.0001577	0.051327	1.8719E-05	364.7059549367696	19.098	0.6105	19.098	18.9	19.511	0					28	12	3	0	0	0	0.30437	1	5949	5949		82.305	0	1	659760			32326	1195	22426	22500	32727	32727					0.023084043489348005
RAPAPRGG	8	Unmodified	_RAPAPRGG_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.22479248046875	2	391.225011	780.435469	0.34168	0.00013367	-0.16073	-6.288E-05	0.18095	7.0793E-05	391.2248343886734	43.882	2.0593	43.882	43.246	45.306	0					281	113	3	0	0	0	0.8006	1	17153	17153		20.482	0	1	459120			32327	8048	22427	22501	32728	32728					0.03646915334422829
RAPAPRGG	8	Unmodified	_RAPAPRGG_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.22540283203125	2	391.225011	780.435469	-0.15605	-6.1052E-05	0.77266	0.00030229	0.61661	0.00024123	391.2252602014659	43.435	0.93853	43.435	43.238	44.176	0					83	56	2	0	0	0	0.75243	1	15191	15191		26.796	0	1	84797			32328	8048	22427	22501	32729	32729					0.03646915334422829
RAPAPRGG	8	Unmodified	_RAPAPRGG_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.224853515625	2	391.225011	780.435469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.454	1	43.454	42.954	43.954	0								0	0	0	1.7419	1	15056	15056		28.254	1.4582	1				32329	8048	22427	22501	32730	32730					0.03646915334422829
RAPAPRGG	8	Unmodified	_RAPAPRGG_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.22491455078125	2	391.225011	780.435469	0.47545	0.00018601	-0.38456	-0.00015045	0.09089	3.5559E-05	391.2247396074221	42.243	1.7431	42.243	41.477	43.22	0					111	48	3	0	0	0	0.75243	1	17012	17012		26.796	6.3143	1	319650			32330	8048	22427	22501	32731	32731					0.03646915334422829
RAPAPRGG	8	Unmodified	_RAPAPRGG_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.22491455078125	2	391.225011	780.435469	0.47511	0.00018587	-0.39742	-0.00015548	0.077688	3.0394E-05	391.2247545235068	43.634	2.4442	43.634	43.211	45.655	0					235	95	4	0	0	0	0.8006	2	17473	17473;18046		20.482	20.482	1	1576700			32331	8048	22427	22501	32732;32733	32732					0.03646915334422829
RAPAPRSA	8	Unmodified	_RAPAPRSA_					0	0	0			REV__ENST00000317089.9_1_16:47007413-47007584:-|nuORF	REV__ENST00000317089.9_1_16:47007413-47007584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2389831542969	2	413.238119	824.461684	-0.072779	-3.0075E-05	0.69181	0.00028588	0.61903	0.00025581	413.2384141172688	44.912	0.51253	44.912	44.593	45.106	0					45	31	2	0	0	0	0.72381	1	15306	15306		30.504	0	1	75001	+		32332	18311	22428	22502	32734	32734					0.04243184505889985
RAPDVARAL	9	Unmodified	_RAPDVARAL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.78521728515625	2	484.785433	967.556313	0.33879	0.00016424	-0.69237	-0.00033565	-0.35357	-0.00017141	484.78502736096846	25.141	0.24498	25.141	25.03	25.275	0					9	5	2	0	0	0	0.10915	1	8553	8553		77.318	17.024	1	152290			32333	7238	22429	22503	32735	32735					0.07123698257214528
RAPDVARAL	9	Unmodified	_RAPDVARAL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.78497314453125	2	484.785433	967.556313	-0.092871	-4.5023E-05	-0.61386	-0.00029759	-0.70673	-0.00034261	484.7850945539059	25.115	0.36768	25.115	25.008	25.375	0					17	7	4	0	0	0	0.028876	1	8884	8884		110.12	16.924	1	800730			32334	7238	22429	22503	32736	32736					0.07123698257214528
RAPDVARAL	9	Unmodified	_RAPDVARAL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.78546142578125	2	484.785433	967.556313	0.29918	0.00014504	-0.29753	-0.00014424	0.0016499	7.9985E-07	484.78516231945235	24.977	0.23844	24.977	24.876	25.114	0					9	5	2	0	0	0	0.54081	1	7862	7862		28.081	0.19925	1	83600			32335	7238	22429	22503	32737	32737					0.07123698257214528
RAPDVARAL	9	Unmodified	_RAPDVARAL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7849426269531	2	484.785433	967.556313	-0.57556	-0.00027902	-0.099181	-4.8082E-05	-0.67474	-0.0003271	484.78532098292175	25.069	0.46848	25.069	24.963	25.431	0					22	9	4	0	0	0	0.27249	1	8721	8721		52.937	5.2794	1	1388400			32336	7238	22429	22503	32738	32738					0.07123698257214528
RAPEVSGVLS	10	Unmodified	_RAPEVSGVLS_					0	0	0		ENST00000204566.6_1_15:65273230-65275885:-|nuORF	ENST00000204566.6_1_15:65273230-65275885:-|nuORF	ENST00000204566.6_1_15:65273230-65275885:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.78277587890625	2	507.782556	1013.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.466	1	33.466	32.966	33.966	0								0	0	0	0.23331	1	12377	12377		60.118	7.1816	1				32337	8151	22430	22504	32739	32739					0.04432554954905754
RAPGTRTL	8	Unmodified	_RAPGTRTL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2593688964844	2	436.259051	870.503549	0.062702	2.7354E-05	-0.063161	-2.7554E-05	-0.00045867	-2.001E-07	436.2591680140272	17.366	0.215	17.366	17.273	17.488	0					10	5	2	0	0	0	0.53424	1	4876	4876		56.721	7.2795	1	107110			32338	6409	22431	22505	32740	32740					0.06311740194428239
RAPKDIPDPG	10	Unmodified	_RAPKDIPDPG_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.8610534667969	3	355.861096	1064.56146	0.71534	0.00025456	-0.70574	-0.00025115	0.0095959	3.4148E-06	355.86080211091513	22.853	0.25772	22.853	22.805	23.063	0					12	6	3	0	0	0	0.65895	1	7497	7497		27.047	0.98393	1	338770			32339	1653	22432	22506	32741	32741					0.031759573291765264
RAPKGRTFGD	10	Unmodified	_RAPKGRTFGD_					0	0	0		ENSG00000204147|ENST00000647317|ASAH2B;nc|ENSG00000204147|P0C7U1|ASAH2B;nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2	ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8698425292969	3	368.868473	1103.58359	3.1815	0.0011735	0.49458	0.00018244	3.676	0.001356	368.86867561431546	37.34	3.2623	37.34	36.297	39.559	0					119	68	2	0	0	0	0.65213	1	15238	15238		20.03	0	1	593250			32340	7260	22433	22507	32742	32742					0.03594181797620877
RAPPSPSPLAP	11	Unmodified	_RAPPSPSPLAP_					0	0	0		ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.3070678710938	2	545.306198	1088.59784	2.0085	0.0010952	0.5009	0.00027314	2.5094	0.0013684	545.3063987502073	35.303	0.24542	35.303	35.126	35.371	0					15	8	2	0	0	0	0.7326	1	12522	12522		24.519	2.5593	1	76173			32341	8454	22434	22508	32743	32743					0.057088342259021374
RAPQRLRPG	9	Unmodified	_RAPQRLRPG_					0	0	0		ENST00000362057.3_1_9:117266551-117266902:-|nuORF	ENST00000362057.3_1_9:117266551-117266902:-|nuORF	ENST00000362057.3_1_9:117266551-117266902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2855224609375	2	525.817599	1049.62064	3.4524	0.0018154	-0.27889	-0.00014664	3.1735	0.0016687	525.8173513170082	14.383	0.21767	14.383	14.273	14.491	0					10	4	3	0	0	0	0.41113	1	3600	3600		25.45	25.45	1	7130200			32342	8888	22435	22509	32744	32744					0.09781898134042422
RAPRHGPAR	9	Unmodified	_RAPRHGPAR_					0	0	0		ENSG00000157782|ENST00000316803|CABP1	ENSG00000157782|ENST00000316803|CABP1	ENSG00000157782|ENST00000316803|CABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.294189453125	2	509.294291	1016.57403	-1.86	-0.00094726	2.1772	0.0011089	0.31729	0.00016159	509.2950813062266	12.791	0.065532	12.791	12.744	12.81	0					5	3	2	0	0	0	0.35045	1	2507	2507		45.952	0	1	101540			32343	5232	22436	22510	32745	32745					0.06640458302740626
RAPRVTVS	8	Unmodified	_RAPRVTVS_					0	0	0		ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2670593261719	2	443.266876	884.519199	0.41368	0.00018337	-0.068334	-3.029E-05	0.34535	0.00015308	443.26687893702865	21.457	0.15402	21.457	21.311	21.465	0					5	3	2	0	0	0	0.69548	1	6213	6213		34.173	5.023	1	67154			32344	5344	22437	22511	32746	32746					0.07232026711471917
RAPTVPAR	8	Unmodified	_RAPTVPAR_					0	0	0			REV__nc|ENSG00000144485|Q96HZ4-2|HES6	REV__nc|ENSG00000144485|Q96HZ4-2|HES6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.2612609863281	2	434.261594	866.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.922	1	13.922	13.422	14.422	0								0	0	0	1.7419	1	3499	3499		49.442	5.0644	1		+		32345	21056	22438	22512	32747	32747					0.0700404405702102
RAPVPASEL	9	Unmodified	_RAPVPASEL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2665100097656	2	470.266542	938.51853	-0.6186	-0.00029091	0.46373	0.00021808	-0.15487	-7.2831E-05	470.26673969862276	28.203	0.89482	28.203	27.912	28.807	0					34	22	2	0	0	0	0.35021	1	9989	9989		45.972	5.1941	1	310620			32346	6707	22439	22513	32748	32748					0.0468118727176261
RAPVPASEL	9	Unmodified	_RAPVPASEL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.26629638671875	2	470.266542	938.51853	-0.88667	-0.00041697	-1.0551	-0.00049617	-1.9417	-0.00091314	470.2667154681939	28.312	0.68172	28.312	27.98	28.661	0					39	14	3	0	0	0	0.24095	1	10257	10257		56.721	14.325	1	300020			32347	6707	22439	22513	32749	32749					0.0468118727176261
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.2217102050781	3	356.888986	1067.64513	0.44017	0.00015709	-2.7087	-0.0009667	-2.2685	-0.00080961	357.2221531549336	17.921	0.42353	17.921	17.693	18.116	0					36	11	5	0	0	0	0.28897	2	4381	4301;4381		50.034	3.3691	1	3062800			32348	4341	22440	22514	32750;32751	32751					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.8311767578125	2	534.82984	1067.64513	1.1954	0.00063931	0.53706	0.00028724	1.7324	0.00092655	534.8299926845309	17.922	0.50685	17.922	17.662	18.169	0					34	14	4	0	0	0	0.12834	1	4363	4363		72.879	3.2516	1	762840			32349	4341	22440	22514	32752	32752					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.8889465332031	3	356.888986	1067.64513	0.71915	0.00025666	-3.0107	-0.0010745	-2.2915	-0.00081781	357.2220542860377	18.242	0.91938	18.242	17.896	18.816	0					67	21	5	0	0	0	0.21263	1	5237	5237		66.962	8.18	1	12820000			32350	4341	22440	22514	32753	32753					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.837890625	2	534.82984	1067.64513	2.2318	0.0011936	-1.0311	-0.00055147	1.2007	0.00064215	534.8288000058506	18.26	0.75247	18.26	17.942	18.695	0					54	17	5	0	0	0	0.35021	1	5238	5238		45.972	5.1941	1	4778900			32351	4341	22440	22514	32754	32754					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	356.8891906738281	3	356.888986	1067.64513	0.42161	0.00015047	-1.9512	-0.00069638	-1.5296	-0.00054591	356.88889006960716	18.018	0.43066	18.018	17.794	18.225	0					24	9	4	0	0	0	0.35021	1	4564	4564		37.508	3.5865	1	1108400			32352	4341	22440	22514	32755	32755					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	356.8889465332031	3	356.888986	1067.64513	-0.088205	-3.1479E-05	-0.32915	-0.00011747	-0.41735	-0.00014895	356.889001718503	18.002	0.38082	18.002	17.737	18.118	0					28	8	4	0	0	0	0.11898	1	4557	4557		81.525	26.803	1	785000			32353	4341	22440	22514	32756	32756					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.8888854980469	3	356.888986	1067.64513	-0.059295	-2.1162E-05	-2.4668	-0.00088038	-2.5261	-0.00090154	357.22194135957216	18.151	1.0793	18.151	17.784	18.863	0					49	22	5	0	0	0	0.19605	1	5310	5310		51.528	7.1506	1	11523000			32354	4341	22440	22514	32757	32757					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.88897705078125	3	356.888986	1067.64513	1.3582	0.00048473	-2.1215	-0.00075715	-0.76332	-0.00027242	356.8884266843223	18.168	1.0005	18.168	17.767	18.768	0					72	20	5	0	0	0	0.21263	1	5325	5325		50.034	8.6069	1	10408000			32355	4341	22440	22514	32758	32758					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8301391601562	2	534.82984	1067.64513	1.8638	0.00099684	-0.76658	-0.00040999	1.0973	0.00058685	534.8291145835022	18.147	0.85166	18.147	17.817	18.669	0					54	17	5	0	0	0	0.02429	1	5371	5371		114.89	21.751	1	4145200			32356	4341	22440	22514	32759	32759					0.11401113496890503
RAQNYRQAPQ	10	Unmodified	_RAQNYRQAPQ_					0	0	0			REV__ENSG00000237988|ENST00000641137|OR2I1P	REV__ENSG00000237988|ENST00000641137|OR2I1P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	616.3193969726562	2	616.31816	1230.62177	-2.0302	-0.0012512	4.0052	0.0024685	1.975	0.0012172	616.3207038906098	12.756	0.18327	12.756	12.645	12.829	0					16	10	2	0	0	0	0.66699	1	2483	2483		14.865	0	1	129950	+		32357	17670	22441	22515	32760	32760					0.01568067712287302
RAQPQVKAR	9	Unmodified	_RAQPQVKAR_					0	0	0			REV__ENSG00000120054|ENST00000370418|CPN1	REV__ENSG00000120054|ENST00000370418|CPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.3191528320312	2	527.317432	1052.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.892	1	41.892	41.392	42.392	0								0	0	0	0.10121	1	16688	16688		71.296	2.5089	1		+		32358	14268	22442	22516	32761	32761					0.09610478414174395
RAQPRHPGTSG	11	Unmodified	_RAQPRHPGTSG_					0	0	0		nc|ENSG00000187922|Q6JVE6|LCN10	nc|ENSG00000187922|Q6JVE6|LCN10	nc|ENSG00000187922|Q6JVE6|LCN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.30615234375	2	582.305052	1162.59555	1.3755	0.00080095	0.38777	0.0002258	1.7633	0.0010268	582.3052951651317	30.856	0.22812	30.856	30.754	30.982	0					13	5	3	0	0	0	0.74306	1	11159	11159		23.523	2.5758	1	612510			32359	11695	22443	22517	32762	32762					0.020757985407954038
RAQSHVTM	8	Unmodified	_RAQSHVTM_					0	0	0			REV__ENST00000418154.1_1_1:64254543-64254969:-|nuORF	REV__ENST00000418154.1_1_1:64254543-64254969:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.2352600097656	2	465.234719	928.454884	-1.1607	-0.00054	1.7847	0.00083029	0.62397	0.00029029	465.23571418288117	21.665	0.11814	21.665	21.588	21.706	0					6	3	2	0	0	0	0.8006	1	6247	6247		20.482	0	1	154050	+		32360	19048	22444	22518	32763	32763					-0.012204964369857407
RAQVGGMTLS	10	Unmodified	_RAQVGGMTLS_					0	0	0			REV__nc|ENSG00000137936|O75815-3|BCAR3	REV__nc|ENSG00000137936|O75815-3|BCAR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2674560546875	2	510.268758	1018.52296	1.3696	0.00069887	-3.5345	-0.0018035	-2.1649	-0.0011047	510.26709508585935	13.321	0.42822	13.321	13.193	13.621	0					18	8	3	0	0	0	0.14393	1	3039	3039		87.754	2.3948	1	1005300	+		32361	14945	22445	22519	32764	32764					0.01444328423042407
RAQVPGHQ	8	Unmodified	_RAQVPGHQ_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.74053955078125	2	446.741025	891.467498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.64	1	15.64	15.14	16.14	0								0	0	0	1.7419	1	3551	3551		26.796	1.3459	1				32362	3861	22446	22520	32765	32765					0.017422830175632953
RARAASGG	8	Unmodified	_RARAASGG_					0	0	0		ENST00000540593.5_2_14:74353484-74358736:+|nuORF;ENST00000555730.5_2_14:74353484-74360551:+|nuORF	ENST00000540593.5_2_14:74353484-74358736:+|nuORF	ENST00000540593.5_2_14:74353484-74358736:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.70794677734375	2	373.206818	744.399084	0.75675	0.00028242	-0.33109	-0.00012356	0.42566	0.00015886	373.20655503296337	48.472	0.13128	48.472	48.393	48.524	0					12	7	2	0	0	0	0.79567	1	19248	19248		17.365	0.89182	1	58302			32363	10535	22447	22521	32766	32766					0.016660384377132686
RARAGGPP	8	Unmodified	_RARAGGPP_					0	0	0			REV__ENSG00000196872|ENST00000397899|CRACDL	REV__ENSG00000196872|ENST00000397899|CRACDL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.22515869140625	2	391.225011	780.435469	-0.1266	-4.9529E-05	0.23044	9.0154E-05	0.10384	4.0624E-05	391.22501039549866	43.247	0.32635	43.247	43.062	43.388	0					25	18	2	0	0	0	0.79176	1	16313	16313		21.702	0	1	90774	+		32364	17289	22448	22522	32767	32767					0.03646915334422829
RARANPQL	8	Unmodified	_RARANPQL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2705993652344	2	463.26995	924.525347	2.5838	0.001197	-0.43272	-0.00020047	2.1511	0.00099653	463.26961023123516	46.441	0.10526	46.441	46.409	46.515	0					6	4	2	0	0	0	0.75243	1	18590	18590		26.796	26.796	1	41278			32365	3538	22449	22523	32768	32768					0.06006544942988512
RARCRPAVE	9	Unmodified	_RARCRPAVE_					0	0	0			REV__ENST00000334116.7_2_19:37064077-37064176:-|nuORF	REV__ENST00000334116.7_2_19:37064077-37064176:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7857666015625	2	529.287817	1056.56108	1.739	0.00092042	-3.2514	-0.0017209	-1.5124	-0.00080052	529.2858766327633	36.644	0.64528	36.644	36.42	37.065	0					39	19	3	0	0	0	0.37197	1	14410	14410		44.117	1.7207	1	917870	+		32366	18399	22450	22524	32769	32769					0.035062591283576694
RARGARAVR	9	Unmodified	_RARGARAVR_					0	0	0			REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.787841796875	2	506.81539	1011.61623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.533	1	30.533	30.033	31.033	0								0	0	0	0.28996	1	10041	10041		37.159	4.4086	1		+		32367	20609	22451	22525	32770	32770					0.1108843371112016
RARGHSLPLL	10	Unmodified	_RARGHSLPLL_					0	0	0		ENST00000487852.1_1_13:33590814-33628082:+|nuORF	ENST00000487852.1_1_13:33590814-33628082:+|nuORF	ENST00000487852.1_1_13:33590814-33628082:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.339599609375	2	560.340907	1118.66726	0.14605	8.1837E-05	-0.86977	-0.00048737	-0.72372	-0.00040553	560.3402008929141	56.824	0.13045	56.824	56.753	56.883	0					16	8	3	0	0	0	0.71484	1	16954	16954		19.997	6.2214	1	82143			32368	10039	22452	22526	32771	32771					0.11267337965318802
RARKARPK	8	Unmodified	_RARKARPK_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.21820068359375	3	328.217548	981.630815	1.6858	0.0005533	1.1365	0.000373	2.8222	0.00092631	328.21786893214914	11.576	0.13531	11.576	11.515	11.651	0					12	4	3	0	0	0	0.79719	1	2270	2270		20.947	20.947	1	963940	+		32369	17504	22453	22527	32772	32772					0.1392650585926276
RARLPPNM	8	Unmodified	_RARLPPNM_					0	0	0			REV__tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	REV__tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7704162597656	2	477.768729	953.522904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.646	1	15.646	15.146	16.146	0								0	0	0	1.7419	1	3554	3554		8.2313	0	1		+		32370	22016	22454	22528	32773	32773					0.0442837321368188
RARNQLSK	8	Unmodified	_RARNQLSK_					0	0	0		ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7887878417969	2	486.788507	971.562461	0.63866	0.00031089	-0.90868	-0.00044233	-0.27001	-0.00013144	486.78806618676566	39.662	0.23126	39.662	39.509	39.741	0					11	8	2	0	0	0	0.5676	1	15598	15598		53.351	3.8154	1	60609			32371	9789	22455	22529	32774	32774					0.07554216488745169
RARSAPAAAI	10	Unmodified	_RARSAPAAAI_					0	0	0		NGF|p.R49C|1|0.24|ENSG00000134259|chr1:115286651-115286651|G/A|missense_variant;NGF|p.F113Sfs*45|1|0.22|ENSG00000134259|chr1:115286460-115286460|G/-|frameshift_variant;ENSG00000134259|ENST00000369512|NGF	NGF|p.R49C|1|0.24|ENSG00000134259|chr1:115286651-115286651|G/A|missense_variant	NGF|p.R49C|1|0.24|ENSG00000134259|chr1:115286651-115286651|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2906494140625	2	492.290882	982.567212	-0.16671	-8.207E-05	-0.17878	-8.8013E-05	-0.34549	-0.00017008	492.2906233849532	18.97	0.17437	18.97	18.868	19.042	0					9	5	2	0	0	0	0.43008	1	4802	4802		52.937	8.5595	1	93518			32372	3905	22456	22530	32775	32775					0.07523100631499346
RARSRAANRPW	11	Unmodified	_RARSRAANRPW_					0	0	0			REV__ENST00000378787.7_2_13:46946730-46961377:-|nuORF	REV__ENST00000378787.7_2_13:46946730-46961377:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.5856018066406	3	447.585071	1339.73338	0.84633	0.0003788	0.028474	1.2745E-05	0.8748	0.00039155	447.5849644131841	26.142	0.57012	26.142	25.932	26.502	0					20	10	3	0	0	0	0.67983	1	9211	9211		29.551	6.1728	1	939700	+		32373	18750	22457	22531	32776	32776					0.07710546860062095
RARTQLPPAK	10	Unmodified	_RARTQLPPAK_					0	0	0		ENST00000395379.5_1_8:133787694-133790038:+|nuORF	ENST00000395379.5_1_8:133787694-133790038:+|nuORF	ENST00000395379.5_1_8:133787694-133790038:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.34375	2	569.346189	1136.67783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.86	1	18.86	18.36	19.36	0								0	0	0	0.4201	1	4770	4770		9.1829	0	1				32374	9192	22458	22532	32777	32777					0.11495320619746963
RASATSLLF	9	Unmodified	_RASATSLLF_					0	0	0			REV__ENST00000393313.5_1_7:127032378-127032531:-|nuORF	REV__ENST00000393313.5_1_7:127032378-127032531:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2745361328125	2	483.274367	964.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.509	1	34.509	34.009	35.009	0								0	0	0	0.28996	1	11284	11284		37.159	8.9048	1		+		32375	18848	22459	22533	32778	32778					0.05049473788812975
RASCELYAVA	10	Unmodified	_RASCELYAVA_					0	0	0			REV__ENSG00000173156|ENST00000308831|RHOD	REV__ENSG00000173156|ENST00000308831|RHOD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7661743164062	2	541.768591	1081.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.533	1	36.533	36.033	37.033	0								0	0	0	0.37129	1	14234	14234		39.253	0	1		+		32376	16495	22460	22534	32779	32779					-0.014870912968490302
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.307373046875	2	518.306532	1034.59851	1.4013	0.00072629	0.2933	0.00015202	1.6946	0.00087831	518.306726984039	14.205	0.098598	14.205	14.139	14.238	0					9	4	3	0	0	0	0.095583	1	2888	2888		80.455	22.225	1	137190			32377	2718	22461	22535	32780	32780					0.08259673665611444
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.8733215332031	3	345.873447	1034.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.211	1	14.211	13.711	14.711	0								0	0	0	0.20989	1	2893	2893		65.157	19.205	1				32378	2718	22461	22535	32781	32781					0.08259673665611444
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.3068237304688	2	518.306532	1034.59851	1.339	0.00069402	-0.69158	-0.00035845	0.64744	0.00033557	518.3061144224649	14.542	0.32964	14.542	14.417	14.747	0					17	8	4	0	0	0	0.037712	1	3552	3552		101.46	8.2644	1	1266700			32379	2718	22461	22535	32782	32782					0.08259673665611444
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.8735046386719	3	345.873447	1034.59851	0.50299	0.00017397	-0.73183	-0.00025312	-0.22884	-7.9149E-05	345.8731927762323	14.531	0.33233	14.531	14.445	14.777	0					15	8	4	0	0	0	0.19605	1	3546	3546		78.264	34.147	1	1964500			32380	2718	22461	22535	32783	32783					0.08259673665611444
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.306396484375	2	518.306532	1034.59851	0.94765	0.00049117	0.52163	0.00027036	1.4693	0.00076154	518.3068519814537	14.259	0.1179	14.259	14.205	14.323	0					10	5	3	0	0	0	0.076532	1	2983	2983		85.862	32.51	1	170030			32381	2718	22461	22535	32784	32784					0.08259673665611444
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.87347412109375	3	345.873447	1034.59851	-1.9646	-0.00067951	1.9061	0.00065927	-0.05851	-2.0237E-05	345.87426311939316	14.276	0.10712	14.276	14.232	14.34	0					6	4	2	0	0	0	0.28897	1	2988	2988		66.962	24.098	1	151420			32382	2718	22461	22535	32785	32785					0.08259673665611444
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.3062133789062	2	518.306532	1034.59851	0.2502	0.00012968	-1.2078	-0.000626	-0.95759	-0.00049632	518.3058679289169	14.466	0.11571	14.466	14.358	14.474	0					4	2	2	0	0	0	0.095583	1	3595	3595		80.455	29.119	1	193260			32383	2718	22461	22535	32786	32786					0.08259673665611444
RASHPIVQK	9	Unmodified	_RASHPIVQK_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.306640625	2	518.306532	1034.59851	1.579	0.00081838	-1.4985	-0.00077667	0.080487	4.1717E-05	518.305623335715	14.449	0.47164	14.449	14.239	14.711	0					19	9	4	0	0	0	0.02429	1	3606	3606		114.89	49.091	1	2802200			32384	2718	22461	22535	32787	32787					0.08259673665611444
RASKLHAS	8	Unmodified	_RASKLHAS_					0	0	0			REV__ENST00000370673.7_2_1:84815590-84815692:+|nuORF	REV__ENST00000370673.7_2_1:84815590-84815692:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2513427734375	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.854	1	46.854	46.354	47.354	0								0	0	0	1.7419	1	14925	14925		25.45	0	1		+		32385	18638	22462	22536	32788	32788					0.04839453677379879
RASRVSIKS	9	Unmodified	_RASRVSIKS_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.302734375	2	502.30399	1002.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.362	1	23.362	22.862	23.862	0								0	0	0	0.33579	1	6751	6751		20.947	0	1		+		32386	16181	22463	22537	32789	32789					0.09223369802987236
RASSGSINIY	10	Unmodified	_RASSGSINIY_					0	0	0		ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant;ENSG00000171617|ENST00000302351|ENC1;ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant;ENC1|p.R348Gfs*39|1|0.42|ENSG00000171617|chr5:74635445-74635445|C/-|frameshift_variant	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2802734375	2	534.277638	1066.54072	1.7709	0.00094618	2.7606	0.0014749	4.5315	0.0024211	534.2793741641036	34.521	0.32342	34.521	34.412	34.735	0					19	8	3	0	0	0	0.30252	1	13310	13310		54.776	0	1	368340			32387	915	22464	22538	32790	32790					0.010113669495240174
RASTLAMTK	9	Oxidation (M)	_RASTLAM(Oxidation (M))TK_		RASTLAM(1)TK		RASTLAM(65)TK	0	0	1		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;nc|ENSG00000090615|Q08378-4|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.77215576171875	2	497.771134	993.527715	3.3907	0.0016878	-2.5555	-0.001272	0.8352	0.00041574	497.7697525208163	20.269	0.094177	20.269	20.248	20.343	0					5	3	2	0	0	0	0.16806	1	5640	5640		65.465	6.6834	1	51860			32388	1839	22465	22539	32791	32791		83			0.030692125657878933
RASTQAPAPTV	11	Unmodified	_RASTQAPAPTV_					0	0	0		NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8317260742188	2	549.798737	1097.58292	0.2207	0.00012134	0.32561	0.00017902	0.54631	0.00030036	549.7987059704523	30.766	0.19027	30.766	30.664	30.854	0					7	4	2	0	0	0	0.63398	1	11502	11502		33.922	4.7516	1	159970			32389	7350	22466	22540	32792	32792					0.03803342357878137
RASWAFSHRF	10	Unmodified	_RASWAFSHRF_					0	0	0		nc|ENSG00000219200|Q6P5S7|RNASEK	nc|ENSG00000219200|Q6P5S7|RNASEK	nc|ENSG00000219200|Q6P5S7|RNASEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	632.8204345703125	2	632.820338	1263.62612	-2.2006	-0.0013926	1.8525	0.0011723	-0.34814	-0.00022031	632.8214084298523	37.449	0.26601	37.449	37.318	37.584	0					24	13	3	0	0	0	0.66699	1	13394	13394		9.7057	0	1	60404			32390	11764	22467	22541	32793	32793					0.0048557692582562595
RATAQGGAG	9	Unmodified	_RATAQGGAG_					0	0	0			REV__ENST00000370915.5_1_20:60697546-60697723:+|nuORF	REV__ENST00000370915.5_1_20:60697546-60697723:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.7041015625	2	394.704109	787.393664	0.57837	0.00022828	-0.12657	-4.9957E-05	0.4518	0.00017833	394.7039878313205	34.516	0.22182	34.516	34.421	34.642	0					13	9	2	0	0	0	0.45358	1	11272	11272		37.159	0	1	83686	+		32391	18642	22468	22542	32794	32794					-0.008536851447502158
RATGEDMPQ	9	Oxidation (M)	_RATGEDM(Oxidation (M))PQ_		RATGEDM(1)PQ		RATGEDM(44)PQ	0	0	1			REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.72503662109375	2	510.724381	1019.43421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.444	1	12.444	11.944	12.944	0								0	0	0	0.24544	1	2801	2801		44.377	11.565	1		+		32392	22033	22469	22543	32795	32795		795			-0.07473131607298455
RATKPTVQK	9	Unmodified	_RATKPTVQK_					0	0	0		ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.8145141601562	2	514.81419	1027.61383	1.285	0.00066155	-0.84233	-0.00043364	0.4427	0.00022791	514.8136923444282	13.019	0.28011	13.019	12.938	13.218	0					30	13	3	0	0	0	0.076532	1	2514	2514		85.862	6.1492	1	3417900			32393	8315	22470	22544	32796	32796					0.10112540462819197
RATKPTVQK	9	Unmodified	_RATKPTVQK_					0	0	0		ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.545166015625	3	343.545219	1027.61383	0.50632	0.00017394	-0.58815	-0.00020206	-0.081829	-2.8112E-05	343.5450183048224	13.301	0.87438	13.301	13.142	14.016	0					49	23	5	0	0	0	0.022525	1	2984	2984		122.94	37.778	1	11411000			32394	8315	22470	22544	32797	32797					0.10112540462819197
RATKPTVQK	9	Unmodified	_RATKPTVQK_					0	0	0		ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.545166015625	3	343.545219	1027.61383	1.4697	0.00050492	-1.7841	-0.00061291	-0.31435	-0.00010799	343.5447672152965	13.289	0.4642	13.289	13.144	13.608	0					32	10	5	0	0	0	0.15558	1	3189	3189		73.841	10.307	1	26625000			32395	8315	22470	22544	32798	32798					0.10112540462819197
RATKPTVQK	9	Unmodified	_RATKPTVQK_					0	0	0		ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.814208984375	2	514.81419	1027.61383	1.382	0.00071148	-1.2502	-0.00064364	0.13178	6.7842E-05	514.8135610311035	13.289	0.3317	13.289	13.144	13.476	0					11	7	3	0	0	0	0.13726	1	3215	3215		70.816	3.3225	1	929030			32396	8315	22470	22544	32799	32799					0.10112540462819197
RATKPTVQK	9	Unmodified	_RATKPTVQK_					0	0	0		ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.814208984375	2	514.81419	1027.61383	0.13994	7.2045E-05	-0.66295	-0.0003413	-0.52301	-0.00026925	514.8139567405223	13.266	1.9097	13.266	13.018	14.928	0					82	39	5	0	0	0	0.099758	2	2999	2999;3360		79.489	10.148	1	36257000			32397	8315	22470	22544	32800;32801	32800					0.10112540462819197
RATPAKKPK	9	Unmodified	_RATPAKKPK_					0	0	0			REV__ENSG00000204843|ENST00000628224|DCTN1	REV__ENSG00000204843|ENST00000628224|DCTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.8192443847656	2	498.819276	995.623999	-0.67536	-0.00033688	0.48728	0.00024307	-0.18808	-9.3817E-05	498.8195052979976	27.195	0.26647	27.195	27.089	27.355	0					11	5	3	0	0	0	0.5741	1	9863	9863		24.519	2.5593	1	561260	+		32398	17503	22471	22545	32802	32802					0.1260114818803686
RATPQPSIS	9	Unmodified	_RATPQPSIS_					0	0	0			REV__ENST00000321276.7_1_2:223289259-223339308:+|nuORF	REV__ENST00000321276.7_1_2:223289259-223339308:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.76861572265625	2	478.761623	955.508694	-0.65916	-0.00031558	0.073427	3.5154E-05	-0.58574	-0.00028043	478.7616191672091	29.068	0.6659	29.068	28.758	29.424	0					44	13	4	0	0	0	0.45358	1	10764	10764		37.159	8.0096	1	4801800	+		32399	18326	22472	22546	32803	32803					0.02915999266383551
RATQRPPG	8	Unmodified	_RATQRPPG_					0	0	0			REV__ENST00000379757.8_1_6:7899909-7910954:-|nuORF	REV__ENST00000379757.8_1_6:7899909-7910954:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.748779296875	2	441.74885	881.483148	-0.2878	-0.00012713	0.13195	5.8288E-05	-0.15585	-6.8846E-05	441.74887028674834	14.67	0.15708	14.67	14.58	14.738	0					9	6	2	0	0	0	0.76283	1	3043	3043		25.45	2.4077	1	59820	+		32400	18761	22473	22547	32804	32804					0.037665695346163375
RAVAPTMSL	9	Unmodified	_RAVAPTMSL_					0	0	0		nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2620544433594	2	473.262945	944.511337	-0.31563	-0.00014937	-0.68814	-0.00032567	-1.0038	-0.00047505	473.2627262380775	33.334	0.11022	33.334	33.267	33.377	0					6	4	2	0	0	0	0.44593	1	10826	10826		37.812	5.8567	1	78698			32401	4624	22474	22548	32805	32805					0.03686131399683745
RAVAPTMSL	9	Unmodified	_RAVAPTMSL_					0	0	0		nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.26220703125	2	473.262945	944.511337	-0.53383	-0.00025264	-0.16286	-7.7076E-05	-0.69669	-0.00032972	473.26259730286205	33.579	0.25462	33.579	33.443	33.698	0					13	6	3	0	0	0	0.13267	1	12439	12439		71.877	21.853	1	248090			32402	4624	22474	22548	32806	32806					0.03686131399683745
RAVAPTMSL	9	Unmodified	_RAVAPTMSL_					0	0	0		nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2623291015625	2	473.262945	944.511337	2.4052	0.0011383	-1.4572	-0.00068962	0.94808	0.00044869	473.2621548104435	33.529	0.31863	33.529	33.365	33.684	0					14	6	3	0	0	0	0.1424	1	12765	12765		69.628	14.123	1	434050			32403	4624	22474	22548	32807	32807					0.03686131399683745
RAVASINQHLL	11	Unmodified	_RAVASINQHLL_					0	0	0		RYR3|p.F766Lfs*13|1|0.12|ENSG00000198838|chr15:33613314-33613314|T/-|frameshift_variant;RYR3|p.G2237Efs*57|1|0.42|ENSG00000198838|chr15:33722800-33722800|G/-|frameshift_variant;RYR3|p.E2211Qfs*84|1|0.14|ENSG00000198838|chr15:33722725-33722726|-/CA|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3	RYR3|p.F766Lfs*13|1|0.12|ENSG00000198838|chr15:33613314-33613314|T/-|frameshift_variant	RYR3|p.F766Lfs*13|1|0.12|ENSG00000198838|chr15:33613314-33613314|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.3567504882812	2	611.356754	1220.69895	0.1486	9.0846E-05	0.22782	0.00013928	0.37642	0.00023012	611.3567676736304	53.789	0.86743	53.789	53.508	54.375	0					89	54	3	0	0	0	0.78104	1	19561	19561		19.104	1.7386	1	134210			32404	7619	22475	22549	32808	32808					0.09743285928584555
RAVDSLKL	8	Unmodified	_RAVDSLKL_					0	0	0			REV__ENSG00000161920|ENST00000293777|MED11	REV__ENSG00000161920|ENST00000293777|MED11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2768859863281	2	451.276909	900.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.713	1	12.713	12.213	13.213	0								0	0	0	1.7419	1	2732	2732		16.473	1.6083	1		+		32405	15792	22476	22550	32809	32809					0.08501777651417797
RAVMGHAEQ	9	Unmodified	_RAVMGHAEQ_					0	0	0			REV__ENSG00000070182|ENST00000644917|SPTB	REV__ENSG00000070182|ENST00000644917|SPTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.49932861328125	3	333.499392	997.476348	1.4952	0.00049866	-2.1974	-0.00073284	-0.70216	-0.00023417	333.4987839131919	12.475	0.13684	12.475	12.384	12.521	0					7	3	3	0	0	0	0.53064	1	2827	2827		29.17	0.020503	1	617260	+		32406	13170	22477	22551	32810	32810					-0.022491114082640706
RAVNEHEVQ	9	Unmodified	_RAVNEHEVQ_					0	0	0			REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2740478515625	2	541.272887	1080.53122	1.8942	0.0010253	0.57616	0.00031186	2.4703	0.0013371	541.2731051483858	18	0.40635	18	17.776	18.182	0					25	9	4	0	0	0	0.098791	1	5174	5174		79.713	10.085	1	1629600	+		32407	19118	22478	22552	32811	32811					-0.005824013360097524
RAVNEHEVQ	9	Unmodified	_RAVNEHEVQ_					0	0	0			REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.274658203125	2	541.272887	1080.53122	2.1256	0.0011505	0.46579	0.00025212	2.5914	0.0014027	541.2732600511563	17.729	0.2415	17.729	17.609	17.85	0					9	5	2	0	0	0	0.4966	1	4487	4487		32.812	0	1	98181	+		32408	19118	22478	22552	32812	32812					-0.005824013360097524
RAVPVLKSG	9	Unmodified	_RAVPVLKSG_					0	0	0			REV__ENSG00000103485|ENST00000395384|QPRT	REV__ENSG00000103485|ENST00000395384|QPRT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.79254150390625	2	463.792727	925.5709	-0.7007	-0.00032498	0.19433	9.0127E-05	-0.50637	-0.00023485	463.7928475653476	28.444	0.20687	28.444	28.358	28.564	0					13	5	3	0	0	0	0.59802	1	10058	10058		21.96	1.9631	1	358300	+		32409	13682	22479	22553	32813	32813					0.1051377040537318
RAVPVPVQ	8	Unmodified	_RAVPVPVQ_					0	0	0			REV__ENST00000569209.1_1_16:58710156-58711324:-|nuORF	REV__ENST00000569209.1_1_16:58710156-58711324:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.26617431640625	2	433.266345	864.518136	-2.9446	-0.0012758	2.2108	0.00095788	-0.73373	-0.0003179	433.2673681892543	23.837	0.38614	23.837	23.738	24.124	0					14	9	3	0	0	0	0.59411	1	7348	7348		50.025	0	1	277990	+		32410	20365	22480	22554	32814	32814					0.08045812342561476
RAVRLAEA	8	Unmodified	_RAVRLAEA_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2666320800781	2	443.266876	884.519199	-0.10614	-4.7048E-05	-0.17745	-7.8658E-05	-0.28359	-0.00012571	443.2668442284791	21.633	0.23361	21.633	21.533	21.766	0					11	5	3	0	0	0	0.60719	1	6895	6895		47.916	0	1	529010	+		32411	14571	22481	22555	32815	32815					0.0723202671144918
RAVRQPGE	8	Unmodified	_RAVRQPGE_					0	0	0		ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.7540283203125	2	456.754133	911.493713	0.22851	0.00010437	-1.1841	-0.00054086	-0.95563	-0.00043649	456.75380636423245	16.384	0.15184	16.384	16.286	16.438	0					6	3	2	0	0	0	0.44433	1	4440	4440		65.803	7.9919	1	80413			32412	9367	22482	22556	32816	32816					0.034425521890511845
RAVSPSNPK	9	Unmodified	_RAVSPSNPK_					0	0	0		nc|ENSG00000135525|Q14244-4|MAP7;nc|ENSG00000135525|Q14244-7|MAP7;nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;ENSG00000135525|ENST00000354570|MAP7	nc|ENSG00000135525|Q14244-4|MAP7	nc|ENSG00000135525|Q14244-4|MAP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.26995849609375	2	478.269616	954.524678	0.51963	0.00024852	-0.92393	-0.00044189	-0.4043	-0.00019336	478.269209081176	14.319	0.3683	14.319	14.076	14.445	0					21	9	3	0	0	0	0.19952	1	3401	3401		61.691	6.915	1	750570			32413	11536	22483	22557	32817	32817					0.045597055032772005
RAWDCTCC	8	Unmodified	_RAWDCTCC_					0	0	0			REV__nc|ENSG00000165782|Q86T03-3|PIP4P1	REV__nc|ENSG00000165782|Q86T03-3|PIP4P1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.1719665527344	2	479.172415	956.330277	-0.2435	-0.00011668	0.17875	8.5653E-05	-0.064748	-3.1025E-05	479.1723890936428	49.67	0.78387	49.67	49.418	50.202	0					48	32	2	0	0	0	0.78122	1	18088	18088		8.2313	0	1	148660	+		32414	21101	22484	22558	32818	32818					-0.14963453240193303
RAYGPGLEK	9	Unmodified	_RAYGPGLEK_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7716979980469	2	495.771991	989.529429	-0.037145	-1.8415E-05	-0.18216	-9.0308E-05	-0.2193	-0.00010872	495.7719269167725	20.244	0.16843	20.244	20.128	20.297	0					8	3	3	0	0	0	0.14578	1	6541	6541		68.846	13.762	1	178020			32415	4052	22485	22559	32819	32819					0.03424589646044751
RAYPHVFTK	9	Unmodified	_RAYPHVFTK_					0	0	0		UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant;ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant	UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.8102416992188	2	559.808908	1117.60326	1.4319	0.0008016	2.253	0.0012613	3.685	0.0020629	559.8088669233949	21.944	0.22971	21.944	21.878	22.107	0					11	6	3	0	0	0	0.078509	1	6142	6142		85.161	10.906	1	81957			32416	5690	22486	22560	32820	32820					0.04916557808360267
RAYPHVFTK	9	Unmodified	_RAYPHVFTK_					0	0	0		UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant;ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant	UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.8089599609375	2	559.808908	1117.60326	1.7963	0.0010056	-0.31726	-0.0001776	1.4791	0.00082799	559.8082883624936	22.257	0.69797	22.257	22.119	22.817	0					25	16	2	0	0	0	0.02953	1	7195	7195		109.48	21.782	1	887540			32417	5690	22486	22560	32821	32821					0.04916557808360267
RAYPHVFTK	9	Unmodified	_RAYPHVFTK_					0	0	0		UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant;ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant	UQCRQ|p.G34A|1|0.04|ENSG00000164405|chr5:132866982-132866982|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8092041015625	2	559.808908	1117.60326	1.8251	0.0010217	-0.58558	-0.00032781	1.2395	0.0006939	559.8082334786968	22.132	0.46885	22.132	22.02	22.489	0					21	9	4	0	0	0	0.017421	1	7327	7327		126.24	66.124	1	1432900			32418	5690	22486	22560	32822	32822					0.04916557808360267
RAYSHSVSL	9	Unmodified	_RAYSHSVSL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2672119140625	2	510.267073	1018.51959	-0.44444	-0.00022678	0.55137	0.00028135	0.10693	5.4565E-05	510.2673591967862	22.925	0.25128	22.925	22.847	23.098	0					17	8	3	0	0	0	0.15163	1	6816	6816		67.494	6.5217	1	336130			32419	11803	22487	22561	32823	32823					0.011074016406610099
RAYVTLNGK	9	Unmodified	_RAYVTLNGK_					0	0	0		nc|ENSG00000137760|Q96BT7-3|ALKBH8;nc|ENSG00000137760|Q96BT7-2|ALKBH8;ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2915954589844	2	511.293091	1020.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.623	1	29.623	29.123	30.123	0								0	0	0	0.3693	1	9660	9660		19.997	1.6724	1				32420	4190	22488	22562	32824	32824					0.062165650544329765
RCAREFGL	8	Unmodified	_RCAREFGL_					0	0	0		ENST00000590307.1_1_18:77636237-77659813:+|nuORF;ENSG00000178342|ENST00000316249|KCNG2	ENST00000590307.1_1_18:77636237-77659813:+|nuORF	ENST00000590307.1_1_18:77636237-77659813:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2477722167969	2	476.245086	950.47562	-0.38341	-0.0001826	4.4511	0.0021198	4.0677	0.0019372	476.24680980607263	26.272	0.88911	26.272	25.692	26.581	0					31	19	3	0	0	0	0.34985	1	9037	9037		76.847	0.072494	1	698130			32421	6713	22489	22563	32825	32825					-0.0015990605730848984
RCFMCRKK	8	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))FMCRKK_	RC(0.992)FMC(0.008)RKK		RC(21)FMC(-21)RKK		0	1	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000557983.1_1_15:80423514-80429967:+|nuORF;ENSG00000107372|ENST00000376962|ZFAND5	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.2439575195312	2	564.782998	1127.55144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.715	1	15.715	15.215	16.215	0								0	0	0	1.7419	1	4117	4117		40.573	6.4001	2				32422	1751	22490	22564	32826	32826	73				-0.007229684730646113
RCGCKNDA	8	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))GC(Carbamidomethyl (C))KNDA_	RC(1)GC(1)KNDA		RC(53)GC(53)KNDA		0	2	0		nc|ENSG00000145794|Q96KG7-2|MEGF10;MEGF10|p.N964Mfs*2|1|0.49|ENSG00000145794|chr5:127449129-127449129|A/-|frameshift_variant;ENSG00000145794|ENST00000503335|MEGF10	nc|ENSG00000145794|Q96KG7-2|MEGF10	nc|ENSG00000145794|Q96KG7-2|MEGF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.706787109375	2	490.705468	979.396383	2.6746	0.0013124	0.061344	3.0102E-05	2.7359	0.0013425	490.70551455337886	20.535	0.36608	20.535	20.41	20.776	0					17	7	4	0	0	0	0.5676	1	6543	6543		53.351	10.877	1	1923800			32423	4693	22491	22565	32827	32827	198;199				-0.09413921073792153
RCGVVFLIVG	10	Unmodified	_RCGVVFLIVG_					0	0	0			REV__ENSG00000183134|ENST00000332539|PTGDR2	REV__ENSG00000183134|ENST00000332539|PTGDR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.8084716796875	2	531.810062	1061.60557	-1.2542	-0.00066699	-0.76326	-0.00040591	-2.0174	-0.0010729	531.8096718427253	34.136	0.86382	34.136	33.982	34.846	0					57	27	3	0	0	0	0.67199	1	12166	12166		25.45	1.2474	1	417570	+		32424	16917	22492	22566	32828	32828					0.07723270221822531
RCHKDVPPAA	10	Unmodified	_RCHKDVPPAA_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2843017578125	2	547.2822	1092.54985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.566	1	12.566	12.066	13.066	0								0	0	0	0.41253	1	2859	2859		26.693	3.1702	1				32425	8045	22493	22567	32829	32829					0.007274370341974645
RCKEPMLP	8	Unmodified	_RCKEPMLP_					0	0	0			REV__HHIP|p.E593K|1|0.1|ENSG00000164161|chr4:144734757-144734757|G/A|missense_variant	REV__HHIP|p.E593K|1|0.1|ENSG00000164161|chr4:144734757-144734757|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.25079345703125	2	487.251523	972.488493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.529	1	34.529	34.029	35.029	0								0	0	0	1.7419	1	11650	11650		60.294	10.852	1		+		32426	20745	22494	22568	32830	32830					0.0011478901055852475
RCKNQISSMG	10	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))KNQISSMG_	RC(1)KNQISSMG		RC(55)KNQISSMG		0	1	0		ENST00000422732.2_10:47098417-47099340:-|nuORF	ENST00000422732.2_10:47098417-47099340:-|nuORF	ENST00000422732.2_10:47098417-47099340:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.7794799804688	2	590.781707	1179.54886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.08	1	37.08	36.58	37.58	0								0	0	0	0.27541	1	14482	14482		54.776	9.7541	1				32427	9409	22495	22569	32831	32831	389				-0.03373145397040389
RCLGFQFTPA	10	Unmodified	_RCLGFQFTPA_					0	0	0		nc|ENSG00000079435|Q05469-2|LIPE;ENSG00000079435|ENST00000244289|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.2918090820312	2	570.286951	1138.55935	3.4279	0.0019549	1.1509	0.00065633	4.5788	0.0026112	570.2874244387352	40.574	0.23301	40.574	40.469	40.702	0					8	5	2	0	0	0	0.52707	1	16129	16129		42.396	8.4745	1	94258			32428	1622	22496	22570	32832	32832					-0.0043879468025807
RCLLRKNLM	9	Unmodified	_RCLLRKNLM_					0	0	0		ENST00000478296.5_1_3:75787041-75787971:-|nuORF	ENST00000478296.5_1_3:75787041-75787971:-|nuORF	ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8351440429688	2	573.833546	1145.65254	3.3512	0.001923	-0.22957	-0.00013174	3.1216	0.0017913	573.8334341152566	37.345	0.51035	37.345	37.086	37.596	0					24	10	3	0	0	0	0.44593	1	14580	14580		30.504	30.504	1	344740			32429	9932	22497	22571	32833	32833					0.08553806501299732
RCLSQLLLA	9	Unmodified	_RCLSQLLLA_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8027038574219	2	508.799694	1015.58484	3.8809	0.0019746	3.2791	0.0016684	7.1599	0.003643	508.8012271244215	30.991	0.22334	30.991	30.901	31.124	0					11	8	2	0	0	0	0.17854	1	10227	10227		64.207	0.67341	1	78668			32430	6780	22498	22572	32834	32834					0.07766679842166013
RCMFCRNK	8	Unmodified	_RCMFCRNK_					0	0	0			REV__ENST00000557983.1_1_15:80423514-80429967:+|nuORF	REV__ENST00000557983.1_1_15:80423514-80429967:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2466430664062	2	529.246249	1056.47794	0.28638	0.00015156	4.1175	0.0021792	4.4039	0.0023307	529.2491396655425	15.55	0.36302	15.55	15.306	15.669	0					15	7	3	0	0	0	0.76283	1	4312	4312		25.45	0.93098	1	389190	+		32431	13369	22499	22573	32835	32835					-0.048035169155355106
RCPAEAQE	8	Unmodified	_RCPAEAQE_					0	0	0			REV__ENSG00000181444|ENST00000302017|ZNF467	REV__ENSG00000181444|ENST00000302017|ZNF467	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2035827636719	2	452.203084	902.391615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.672	1	15.672	15.172	16.172	0								0	0	0	1.7419	1	4096	4096		47.657	10.498	1		+		32432	16847	22500	22574	32836	32836					-0.06348481944894502
RCPDYYEN	8	Unmodified	_RCPDYYEN_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2173461914062	2	530.213649	1058.41274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.984	1	11.984	11.484	12.484	0								0	0	0	1.7419	1	2442	2442		27.882	4.8398	1				32433	2122	22501	22575	32837	32837					-0.11412516636028158
RCPGTDVIMI	10	Unmodified	_RCPGTDVIMI_					0	0	0		nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;ADGRL3|p.P107Sfs*9|1|0.45|ENSG00000150471|chr4:61676869-61676870|-/T|frameshift_variant;ADGRL3|p.P254Lfs*10|1|0.22|ENSG00000150471|chr4:61733117-61733117|C/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2-3|ADGRL3;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant	nc|ENSG00000150471|Q9HAR2|ADGRL3	nc|ENSG00000150471|Q9HAR2|ADGRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7811889648438	2	552.780644	1103.54674	0.62	0.00034273	-0.32364	-0.0001789	0.29636	0.00016382	552.780557980744	33.125	0.29322	33.125	33.046	33.339	0					19	8	3	0	0	0	0.24256	1	12223	12223		74.255	0	1	357340			32434	4924	22502	22576	32838	32838					-0.0008957413483585697
RCPLCGLLT	9	Carbamidomethyl (C)	_RCPLC(Carbamidomethyl (C))GLLT_	RC(0.008)PLC(0.992)GLLT		RC(-21)PLC(21)GLLT		0	1	0		ENST00000378536.4_1_1:2240387-2240723:+|nuORF	ENST00000378536.4_1_1:2240387-2240723:+|nuORF	ENST00000378536.4_1_1:2240387-2240723:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7708129882812	2	516.77008	1031.52561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.049	1	32.049	31.549	32.549	0								0	0	0	0.11184	1	11728	11728		68.787	7.8149	2				32435	9071	22503	22577	32839	32839	380				0.011104605563104997
RCPLHILLT	9	Unmodified	_RCPLHILLT_					0	0	0			REV__ENST00000449259.1_1_2:65131264-65131681:-|nuORF	REV__ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.31640625	2	533.315512	1064.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.418	1	29.418	28.918	29.918	0								0	0	0	0.37496	1	10891	10891		18.324	0	1		+		32436	19301	22504	22578	32840	32840					0.08674672596112032
RCPPSRSSLE	10	Unmodified	_RCPPSRSSLE_					0	0	0			REV__ENST00000338560.11_1_17:16318878-16320981:+|nuORF	REV__ENST00000338560.11_1_17:16318878-16320981:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.27978515625	2	566.282397	1130.55024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.162	1	30.162	29.662	30.662	0								0	0	0	0.27541	1	9880	9880		54.776	0.053964	1		+		32437	18432	22505	22579	32841	32841					-0.009811880365987236
RCQKAMTAK	9	Unmodified	_RCQKAMTAK_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7733154296875	2	518.773154	1035.53175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.509	1	12.509	12.009	13.009	0								0	0	0	0.1219	1	2833	2833		66.429	2.222	1				32438	3472	22506	22580	32842	32842					0.01540978787829772
RCQKAMTAK	9	Unmodified	_RCQKAMTAK_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7733764648438	2	518.773154	1035.53175	0.26784	0.00013895	0.31548	0.00016366	0.58332	0.00030261	518.7734028118145	12.502	0.14195	12.502	12.457	12.599	0					6	3	2	0	0	0	0.11898	1	2683	2683		75.043	6.5586	1	555030			32439	3472	22506	22580	32843	32843					0.01540978787829772
RCQMLVPVL	9	Unmodified	_RCQMLVPVL_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7960205078125	2	529.796097	1057.57764	-1.192	-0.0006315	0.99209	0.0005256	-0.19988	-0.0001059	529.7967068596075	24.072	0.18912	24.072	23.983	24.172	0					10	4	3	0	0	0	0.23186	1	7435	7435		57.811	57.811	1	477860			32440	11686	22507	22581	32844	32844					0.051156239700958395
RCQQPIGTK	9	Unmodified	_RCQQPIGTK_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7777099609375	2	515.776751	1029.53895	-0.075121	-3.8746E-05	0.86583	0.00044658	0.79071	0.00040783	515.777437628313	15.444	0.1897	15.444	15.397	15.587	0					11	6	3	0	0	0	0.24095	1	3521	3521		56.721	1.9447	1	65806			32441	2926	22508	22582	32845	32845					0.025360346599200057
RCQRIPNG	8	Unmodified	_RCQRIPNG_					0	0	0			REV__nc|ENSG00000001617|Q13275-2|SEMA3F	REV__nc|ENSG00000001617|Q13275-2|SEMA3F	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2481689453125	2	472.24816	942.481768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.738	1	37.738	37.238	38.238	0								0	0	0	1.7419	1	12749	12749		26.796	2.5934	1		+		32442	12812	22509	22583	32846	32846					0.008226121742154646
RCRAPRPPG	9	Unmodified	_RCRAPRPPG_					0	0	0		ENST00000260403.6_1_15:43425920-43426470:+|nuORF	ENST00000260403.6_1_15:43425920-43426470:+|nuORF	ENST00000260403.6_1_15:43425920-43426470:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.27532958984375	2	505.277252	1008.53995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.045	1	45.045	44.545	45.545	0								0	0	0	0.3304	1	17473	17473		29.15	2.3535	1				32443	8288	22510	22584	32847	32847					0.03602293819483293
RCRDMLSQ	8	Unmodified	_RCRDMLSQ_					0	0	0		AIPL1|p.N325D|1|0.36|ENSG00000129221|chr17:6425642-6425642|T/C|missense_variant	AIPL1|p.N325D|1|0.36|ENSG00000129221|chr17:6425642-6425642|T/C|missense_variant	AIPL1|p.N325D|1|0.36|ENSG00000129221|chr17:6425642-6425642|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7425537109375	2	504.739311	1007.46407	2.9328	0.0014803	3.0818	0.0015555	6.0146	0.0030358	504.7410873361946	15.52	0.26028	15.52	15.471	15.731	0					13	5	4	0	0	0	0.32815	1	4123	4123		79.451	2.1334	1	1266900			32444	104	22511	22585	32848	32848					-0.03936471142969822
RCRLTAPSY	9	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))RLTAPSY_	RC(1)RLTAPSY		RC(51)RLTAPSY		0	1	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.287353515625	2	562.287482	1122.56041	1.7869	0.0010047	-1.0227	-0.00057507	0.76414	0.00042967	562.2870054152604	29.737	0.21123	29.737	29.694	29.906	0					9	5	2	0	0	0	0.2873	1	10664	10664		51.335	9.9088	1	299890	+		32445	20925	22512	22586	32849	32849	721				0.004034196886095742
RCSDELKKN	9	Unmodified	_RCSDELKKN_					0	0	0			REV__DLEC1|p.V476Rfs*58|1|0.38|ENSG00000008226|chr3:38085431-38085432|-/C|frameshift_variant	REV__DLEC1|p.V476Rfs*58|1|0.38|ENSG00000008226|chr3:38085431-38085432|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.2737426757812	2	546.776948	1091.53934	1.2179	0.0006659	2.1587	0.0011803	3.3765	0.0018462	546.7780822031453	29.448	0.37955	29.448	29.286	29.666	0					28	13	4	0	0	0	0.44593	1	9259	9259		37.812	3.8899	1	663890	+		32446	12712	22513	22587	32850	32850					-0.0027659041086280922
RCSGLNQFIHM	11	Unmodified	_RCSGLNQFIHM_					0	0	0			REV__ENSG00000120436|ENST00000366834|GPR31	REV__ENSG00000120436|ENST00000366834|GPR31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	653.3147583007812	2	653.313174	1304.6118	2.1853	0.0014277	-0.39482	-0.00025794	1.7905	0.0011697	653.3130154420418	35.364	0.22137	35.364	35.281	35.503	0					13	6	3	0	0	0	0.78498	1	13722	13722		18.262	1.5447	1	187300	+		32447	14281	22514	22588	32851	32851					-0.02832579608980268
RCSGTSVSTQ	10	Unmodified	_RCSGTSVSTQ_					0	0	0			REV__ENST00000597598.1_1_19:44238621-44241785:-|nuORF	REV__ENST00000597598.1_1_19:44238621-44241785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2395629882812	2	513.237655	1024.46076	3.1667	0.0016252	0.41249	0.0002117	3.5791	0.001837	513.2381211322449	27.434	0.62626	27.434	27.12	27.746	0					31	12	5	0	0	0	0.092915	1	9804	9804		96.665	22.5	1	3095300	+		32448	20576	22515	22589	32852	32852					-0.05049442715960595
RCTCFCVK	8	Unmodified	_RCTCFCVK_					0	0	0			REV__ENST00000508394.6_1_12:54575540-54575678:-|nuORF	REV__ENST00000508394.6_1_12:54575540-54575678:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.21710205078125	2	480.216626	958.418698	-0.18568	-8.9168E-05	1.1042	0.00053024	0.91848	0.00044107	480.21711745982714	12.268	0.17824	12.268	12.175	12.353	0					11	6	3	0	0	0	0.67394	1	2539	2539		37.159	0	1	553600	+		32449	19851	22516	22590	32853	32853					-0.062174129297090985
RCVERPMPT	9	Unmodified	_RCVERPMPT_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.5171813964844	3	363.516166	1087.52667	3.1332	0.001139	-0.2745	-9.9787E-05	2.8587	0.0010392	363.51603900933594	20.568	0.3675	20.568	20.46	20.828	0					18	7	4	0	0	0	0.22377	1	6544	6544		65.465	9.0316	1	3561700	+		32450	15204	22517	22591	32854	32854					-0.013593250747589991
RCVNLEKTL	9	Unmodified	_RCVNLEKTL_					0	0	0			REV__nc|ENSG00000131626|Q13136-2|PPFIA1	REV__nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.299072265625	2	538.300059	1074.58556	-1.4541	-0.00078273	-1.4487	-0.00077982	-2.9027	-0.0015625	538.800881555306	33.447	0.19502	33.447	33.374	33.569	0					7	5	2	0	0	0	0.15558	1	11731	11731		51.193	0	1	118520	+		32451	14629	22518	22592	32855	32855					0.051254744912057504
RCVPAADPLR	10	Unmodified	_RCVPAADPLR_					0	0	0			REV__ENST00000586944.5_1_19:797434-805231:+|nuORF	REV__ENST00000586944.5_1_19:797434-805231:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.3007202148438	2	549.29785	1096.58115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.384	1	17.384	16.884	17.884	0								0	0	0	0.3805	1	5005	5005		36.447	1.246	1		+		32452	20489	22519	22593	32856	32856					0.036720100682714474
RCYYCNGPIL	10	Unmodified	_RCYYCNGPIL_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.27783203125	2	601.278269	1200.54198	-0.58236	-0.00035016	-0.052671	-3.167E-05	-0.63503	-0.00038183	601.2782296375462	29.39	0.54853	29.39	29.31	29.859	0					59	21	4	0	0	0	0.58896	1	9543	9543		35.618	35.618	1	1322200			32453	1804	22520	22594	32857	32857					-0.0502645827757533
RDAKAIEK	8	Unmodified	_RDAKAIEK_					0	0	0			REV__HDC|p.G431D|1|0.09|ENSG00000140287|chr15:50242957-50242957|C/T|missense_variant	REV__HDC|p.G431D|1|0.09|ENSG00000140287|chr15:50242957-50242957|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7717590332031	2	465.771991	929.529429	-0.49428	-0.00023022	-0.14848	-6.9159E-05	-0.64276	-0.00029938	465.7719659164579	17.986	0.2586	17.986	17.883	18.142	0					9	5	2	0	0	0	0.41701	1	5305	5305		68.787	2.3575	1	1121000	+		32454	20719	22521	22595	32858	32858					0.06184589646022687
RDALKSLQ	8	Unmodified	_RDALKSLQ_					0	0	0			REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7716979980469	2	465.771991	929.529429	0.19895	9.2665E-05	-0.54283	-0.00025283	-0.34388	-0.00016017	465.7716739361975	18.036	0.15547	18.036	17.959	18.114	0					8	3	3	0	0	0	0.5535	1	5201	5201		54.776	0	1	213100	+		32455	13911	22522	22596	32859	32859					0.06184589646022687
RDALKSLQ	8	Unmodified	_RDALKSLQ_					0	0	0			REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7716369628906	2	465.771991	929.529429	0.47696	0.00022215	-0.29113	-0.0001356	0.18583	8.6556E-05	465.7715623774821	18.041	0.3243	18.041	17.896	18.221	0					10	7	2	0	0	0	0.37144	1	5198	5198		74.255	0	1	885310	+		32456	13911	22522	22596	32860	32860					0.06184589646022687
RDCAVKPCQS	10	Unmodified	_RDCAVKPCQS_					0	0	0		ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7571411132812	2	553.757701	1105.50085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.835	1	15.835	15.335	16.335	0								0	0	0	0.41137	1	4409	4409		27.047	2.5281	1				32457	7509	22523	22597	32861	32861					-0.04768219317065814
RDCIAEAKL	9	Unmodified	_RDCIAEAKL_					0	0	0		EPX|p.C263Lfs*10|1|0.24|ENSG00000121053|chr17:58195149-58195150|-/C|frameshift_variant;ENSG00000121053|ENST00000225371|EPX	EPX|p.C263Lfs*10|1|0.24|ENSG00000121053|chr17:58195149-58195150|-/C|frameshift_variant	EPX|p.C263Lfs*10|1|0.24|ENSG00000121053|chr17:58195149-58195150|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7718505859375	2	509.771134	1017.52771	-0.03006	-1.5324E-05	3.3341	0.0016996	3.304	0.0016843	509.77252416615687	22.797	0.36523	22.797	22.688	23.053	0					12	7	2	0	0	0	0.18416	1	7646	7646		47.657	0	1	728250			32458	3208	22524	22598	32862	32862					0.019652125657671604
RDCLRSFTD	9	Unmodified	_RDCLRSFTD_					0	0	0		ENSG00000140455|ENST00000380324|USP3;nc|ENSG00000140455|Q9Y6I4-2|USP3	ENSG00000140455|ENST00000380324|USP3	ENSG00000140455|ENST00000380324|USP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.764892578125	2	556.761297	1111.50804	1.6746	0.00093238	2.6064	0.0014511	4.281	0.0023835	556.7627734493591	22.148	0.14068	22.148	22.046	22.187	0					6	3	2	0	0	0	0.41113	1	6533	6533		40.778	5.1599	1	58939			32459	4385	22525	22599	32863	32863					-0.04325163444991631
RDCLRSFTD	9	Unmodified	_RDCLRSFTD_					0	0	0		ENSG00000140455|ENST00000380324|USP3;nc|ENSG00000140455|Q9Y6I4-2|USP3	ENSG00000140455|ENST00000380324|USP3	ENSG00000140455|ENST00000380324|USP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.7636108398438	2	556.761297	1111.50804	1.8235	0.0010153	2.3882	0.0013297	4.2118	0.002345	556.7625564373169	22.278	0.41779	22.278	22.071	22.489	0					20	8	4	0	0	0	0.30951	1	7400	7400		49.442	1.7842	1	754070			32460	4385	22525	22599	32864	32864					-0.04325163444991631
RDCSTNQL	8	Unmodified	_RDCSTNQL_					0	0	0			REV__nc|ENSG00000146453|Q8NA58|PNLDC1	REV__nc|ENSG00000146453|Q8NA58|PNLDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.71356201171875	2	468.713816	935.413079	0.63113	0.00029582	-0.4317	-0.00020234	0.19943	9.3476E-05	468.7135674123769	38.472	0.94991	38.472	38.277	39.227	0					51	33	2	0	0	0	0.73426	1	15194	15194		29.15	29.15	1	74279	+		32461	15314	22526	22600	32865	32865					-0.05721096916170154
RDEAVNKIR	9	Unmodified	_RDEAVNKIR_					0	0	0		ENST00000260604.8_1_2:55870335-55906871:-|nuORF;ENSG00000138035|ENST00000447944|PNPT1;ENST00000450418.1_1_3:4024502-4025426:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.8124389648438	2	550.812179	1099.60981	0.30441	0.00016767	0.31081	0.0001712	0.61522	0.00033887	550.81245237	20.402	0.15633	20.402	20.291	20.447	0					6	4	2	0	0	0	0.27123	1	5704	5704		53.089	3.0554	1	87948			32462	4218	22527	22601	32866	32866					0.06398450969072655
RDEAVNKIR	9	Unmodified	_RDEAVNKIR_					0	0	0		ENST00000260604.8_1_2:55870335-55906871:-|nuORF;ENSG00000138035|ENST00000447944|PNPT1;ENST00000450418.1_1_3:4024502-4025426:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.81298828125	2	550.812179	1099.60981	3.7294	0.0020542	-2.0712	-0.0011408	1.6583	0.0009134	550.8110383426757	20.617	0.31628	20.617	20.46	20.776	0					8	6	2	0	0	0	0.047855	1	6591	6591		96.034	14.509	1	922850			32463	4218	22527	22601	32867	32867					0.06398450969072655
RDEGFITL	8	Unmodified	_RDEGFITL_					0	0	0		ENST00000337195.9_1_10:126799584-126849016:-|nuORF	ENST00000337195.9_1_10:126799584-126849016:-|nuORF	ENST00000337195.9_1_10:126799584-126849016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7513732910156	2	475.750724	949.486896	-0.40722	-0.00019373	0.50527	0.00024038	0.098053	4.6649E-05	475.75108366302953	42.876	0.18913	42.876	42.808	42.997	0					20	11	2	0	0	0	0.66095	1	14923	14923		39.253	1.4413	1	161320			32464	8701	22528	22602	32868	32868					0.010131945178045498
RDELAEKH	8	Unmodified	_RDELAEKH_					0	0	0			REV__CARD11|p.R309H|1|0.19|ENSG00000198286|chr7:2938770-2938770|C/T|missense_variant	REV__CARD11|p.R309H|1|0.19|ENSG00000198286|chr7:2938770-2938770|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2555236816406	2	499.256705	996.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.837	1	12.837	12.337	13.337	0								0	0	0	1.7419	1	2987	2987		23.042	1.0826	1		+		32465	12329	22529	22603	32869	32869					0.00046811260983758984
RDERATLLN	9	Unmodified	_RDERATLLN_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2984008789062	2	544.296362	1086.57817	3.6815	0.0020038	0.4065	0.00022126	4.088	0.0022251	544.2962722863069	34.475	0.92448	34.475	33.793	34.717	0					42	19	4	0	0	0	0.38666	1	13202	13202		42.864	1.4377	1	824630			32466	2266	22530	22604	32870	32870					0.03834458215169434
RDFQHVEKL	9	Unmodified	_RDFQHVEKL_					0	0	0		ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2	ENSG00000178078|ENST00000594605|STAP2	ENSG00000178078|ENST00000594605|STAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.21197509765625	3	391.212128	1170.61456	0.47519	0.0001859	-1.6248	-0.00063563	-1.1496	-0.00044973	391.2116407211453	23.771	0.26446	23.771	23.666	23.931	0					11	5	3	0	0	0	0.33548	1	8119	8119		47.228	4.8896	1	509680			32467	6699	22531	22605	32871	32871					0.03607335111860266
RDFTVSAM	8	Unmodified	_RDFTVSAM_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.723388671875	2	463.723652	925.432752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.001	1	34.001	33.501	34.501	0								0	0	0	1.7419	1	12985	12985		68.787	5.4806	1				32468	5432	22532	22606	32872	32872					-0.032947209053986626
RDGAGVVSSL	10	Unmodified	_RDGAGVVSSL_					0	0	0			REV__ENST00000249016.4_1_22:41075352-41075709:+|nuORF	REV__ENST00000249016.4_1_22:41075352-41075709:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.76092529296875	2	480.759081	959.503609	2.3325	0.0011214	1.796	0.00086346	4.1285	0.0019848	480.7598930580157	40.042	0.23346	40.042	39.943	40.176	0					11	5	3	0	0	0	0.536	1	15857	15857		41.427	41.427	1	1514100	+		32469	17959	22533	22607	32873	32873					0.022236954037680334
RDGLSALIR	9	Unmodified	_RDGLSALIR_					0	0	0			REV__ENST00000552245.5_1_12:99225710-99548222:-|nuORF	REV__ENST00000552245.5_1_12:99225710-99548222:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.79937744140625	2	500.79854	999.582528	-0.046346	-2.321E-05	-0.13949	-6.9856E-05	-0.18583	-9.3066E-05	500.79852493843975	24.022	0.27387	24.022	23.919	24.193	0					18	8	3	0	0	0	0.43488	1	7007	7007		39.253	0	1	1437400	+		32470	17006	22534	22608	32874	32874					0.08271967428697735
RDGQRYLARG	10	Unmodified	_RDGQRYLARG_					0	0	0			REV__PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	REV__PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.3209838867188	2	596.320703	1190.62685	1.3125	0.00078269	0.13508	8.0549E-05	1.4476	0.00086324	596.3207776948877	38.763	0.34062	38.763	38.65	38.99	0					29	12	3	0	0	0	0.67098	1	15192	15192		25.574	0	1	929910	+		32471	12970	22535	22609	32875	32875					0.0391637157488276
RDGSFTVSA	9	Unmodified	_RDGSFTVSA_					0	0	0		ENSG00000165487|ENST00000382374|MICU2;ENST00000469058.1_1_13:22176939-22178287:-|nuORF;MICU2|p.R195Kfs*5|1|0.25|ENSG00000165487|chr13:21521258-21521259|-/T|frameshift_variant	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2297668457031	2	470.230156	938.445759	-0.61946	-0.00029129	-0.6489	-0.00030513	-1.2684	-0.00059642	470.2298062346318	27.662	0.22017	27.662	27.572	27.792	0					9	5	2	0	0	0	0.46194	1	9697	9697		36.447	2.2742	1	230110			32472	5803	22536	22610	32876	32876					-0.025925665216618654
RDGYISHR	8	Unmodified	_RDGYISHR_					0	0	0		ENST00000545777.1_1_11:67223622-67225073:+|nuORF;nc|ENSG00000175544|P57796-2|CABP4;ENSG00000175544|ENST00000325656|CABP4	ENST00000545777.1_1_11:67223622-67225073:+|nuORF	ENST00000545777.1_1_11:67223622-67225073:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.25921630859375	2	502.25704	1002.49953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.365	1	15.365	14.865	15.865	0								0	0	0	1.7419	1	3332	3332		35.618	0.41757	1				32473	6563	22537	22611	32877	32877					-0.0016234929928486963
RDHAREAE	8	Unmodified	_RDHAREAE_					0	0	0		ENST00000333957.8_1_12:22697022-22697471:-|nuORF	ENST00000333957.8_1_12:22697022-22697471:-|nuORF	ENST00000333957.8_1_12:22697022-22697471:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.23846435546875	2	492.236304	982.458055	-0.54478	-0.00026816	2.9831	0.0014684	2.4384	0.0012002	492.23791159582066	33.164	0.29322	33.164	33.046	33.339	0					18	8	3	0	0	0	0.46905	1	12225	12225		63.306	1.1989	1	419160			32474	8690	22538	22612	32878	32878					-0.03387530058625998
RDHLLRTA	8	Unmodified	_RDHLLRTA_					0	0	0		ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2841491699219	2	491.283057	980.551562	2.6948	0.0013239	0.022821	1.1212E-05	2.7176	0.0013351	491.2829683221464	38.962	0.43041	38.962	38.856	39.287	0					21	9	4	0	0	0	0.43813	1	15368	15368		66.429	66.429	1	680180			32475	4260	22539	22613	32879	32879					0.06050814114473724
RDIEVQKM	8	Unmodified	_RDIEVQKM_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7712707519531	2	509.771134	1017.52771	0.26042	0.00013276	-0.19414	-9.8969E-05	0.06628	3.3788E-05	509.7710410885501	22.819	0.21679	22.819	22.711	22.927	0					7	4	2	0	0	0	0.65595	1	7789	7789		30.318	0	1	378630			32476	11479	22540	22614	32880	32880					0.01965212565778529
RDILQKTVK	9	Unmodified	_RDILQKTVK_					0	0	0		ENST00000477247.6_1_3:75480038-75484201:-|nuORF;ENST00000513466.5_1_3:129823014-129828039:-|nuORF;nc|ENSG00000158483|Q9NVL1-3|FAM86C1P;ENST00000506770.5_1_4:3949295-3954861:-|nuORF	ENST00000477247.6_1_3:75480038-75484201:-|nuORF	ENST00000477247.6_1_3:75480038-75484201:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.5640563964844	3	367.564391	1099.67134	0.75956	0.00027919	-1.0124	-0.00037211	-0.2528	-9.2921E-05	367.5639864818106	20.07	0.15405	20.07	19.971	20.125	0					10	3	4	0	0	0	0.35021	1	6158	6158		53.089	0	1	1259200			32477	9921	22541	22615	32881	32881					0.1254938266836234
RDIPPLTAP	9	Unmodified	_RDIPPLTAP_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.281982421875	2	490.282192	978.549831	0.7716	0.0003783	-1.5647	-0.00076714	-0.79308	-0.00038884	490.2815439986735	38.309	0.33812	38.309	38.111	38.449	0					13	7	3	0	0	0	0.24095	1	15062	15062		56.721	0	1	322400			32478	4194	22542	22616	32882	32882					0.05969760305845284
RDKMGLKLSVA	11	Unmodified	_RDKMGLKLSVA_					0	0	0			REV__tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	REV__tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.2371520996094	3	406.572669	1216.69618	-0.56329	-0.00022902	0.16428	6.679E-05	-0.39901	-0.00016223	406.572797399491	19.486	0.71058	19.486	18.946	19.656	0					16	10	3	0	0	0	0.77537	1	5957	5957		20.315	0.28454	1	2067900	+		32479	21729	22543	22617	32883	32883					0.09649694479435311
RDKSISLLE	9	Unmodified	_RDKSISLLE_					0	0	0			REV__RP1L1|p.L1157R|1|0.37|ENSG00000183638|chr8:10610628-10610628|A/C|missense_variant	REV__RP1L1|p.L1157R|1|0.37|ENSG00000183638|chr8:10610628-10610628|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.80517578125	2	530.803488	1059.59242	0.41132	0.00021833	0.59378	0.00031518	1.0051	0.00053351	530.8042427791645	28.85	0.16631	28.85	28.746	28.912	0					8	5	2	0	0	0	0.24334	1	9053	9053		56.434	2.8369	1	57097	+		32480	21473	22544	22618	32884	32884					0.0650111064342127
RDKYEDGKP	9	Unmodified	_RDKYEDGKP_					0	0	0			REV__SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant	REV__SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.2778930664062	2	554.275095	1106.53564	4.5208	0.0025058	1.0627	0.00058901	5.5835	0.0030948	554.275741424364	24.069	0.17311	24.069	23.997	24.17	0					7	5	2	0	0	0	0.41113	1	7325	7325		40.778	2.9666	1	42787	+		32481	14324	22545	22619	32885	32885					-0.013369369130941777
RDLAGHCYYAL	11	Unmodified	_RDLAGHCYYAL_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;ENST00000358378.6_11:1212786-1216326:+|nuORF	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	641.3065795898438	2	641.305872	1280.59719	2.9624	0.0018998	-1.654	-0.0010607	1.3084	0.00083909	641.3047113047977	27.009	0.41719	27.009	26.821	27.238	0					21	8	3	0	0	0	0.56817	1	9587	9587		39.253	2.0937	1	1122000			32482	7825	22546	22620	32886	32886					-0.03188328485452985
RDLEKDIR	8	Unmodified	_RDLEKDIR_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7993774414062	2	522.793455	1043.57236	3.4057	0.0017805	-1.9742	-0.0010321	1.4315	0.00074838	522.7928235282018	18.052	0.35575	18.052	17.851	18.206	0					11	7	2	0	0	0	0.5535	1	5292	5292		54.776	1.8396	1	4438800			32483	4242	22547	22621	32887	32887					0.05231359703452654
RDLKEFSL	8	Unmodified	_RDLKEFSL_					0	0	0			REV__ENST00000553404.5_1_14:74552288-74665677:+|nuORF	REV__ENST00000553404.5_1_14:74552288-74665677:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2794189453125	2	504.279649	1006.54475	-0.45785	-0.00023088	0.091396	4.6089E-05	-0.36645	-0.00018479	504.279696709228	37.51	0.93068	37.51	36.915	37.846	0					52	28	2	0	0	0	0.46905	1	14728	14728		63.306	6.5852	1	867710	+		32484	17530	22548	22622	32888	32888					0.04173456443231771
RDLLNALK	8	Unmodified	_RDLLNALK_					0	0	0		ENSG00000197888|ENST00000317746|UGT2B17;ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000197888|ENST00000317746|UGT2B17	ENSG00000197888|ENST00000317746|UGT2B17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7899169921875	2	471.790184	941.565815	0.19537	9.2172E-05	-1.1315	-0.00053383	-0.93613	-0.00044166	471.7898266683576	23.491	0.17432	23.491	23.401	23.576	0					10	4	3	0	0	0	0.68432	1	7796	7796		35.618	0	1	642370			32485	7386	22549	22623	32889	32889					0.09269466542741611
RDLSSTTKQ	9	Unmodified	_RDLSSTTKQ_					0	0	0			REV__nc|ENSG00000145194|P0DPD6-3|ECE2	REV__nc|ENSG00000145194|P0DPD6-3|ECE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.277099609375	2	518.275095	1034.53564	3.3418	0.001732	0.0046452	2.4075E-06	3.3465	0.0017344	518.2754026861012	33.373	0.46616	33.373	33.167	33.633	0					23	9	3	0	0	0	0.35021	1	12689	12689		45.972	45.972	1	5747500	+		32486	15259	22550	22624	32890	32890					0.0197506308688844
RDMPIVSY	8	Unmodified	_RDMPIVSY_					0	0	0			REV__nc|ENSG00000147130|Q14202-2|ZMYM3	REV__nc|ENSG00000147130|Q14202-2|ZMYM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7486572265625	2	490.747127	979.479702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.837	1	17.837	17.337	18.337	0								0	0	0	1.7419	1	4551	4551		30.504	0	1		+		32487	15333	22551	22625	32891	32891					-0.010858613542723106
RDPAQGCVTF	10	Unmodified	_RDPAQGCVTF_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2611083984375	2	547.258391	1092.50223	3.8261	0.0020939	0.55985	0.00030638	4.386	0.0024003	547.2587794551722	43.041	0.89967	43.041	42.725	43.625	0					66	29	3	0	0	0	0.58189	1	17276	17276		36.447	0.82846	1	328370			32488	6823	22552	22626	32892	32892					-0.040322619566723006
RDPFLLQG	8	Unmodified	_RDPFLLQG_					0	0	0			REV__ENST00000367157.4_2_1:205272419-205272683:-|nuORF	REV__ENST00000367157.4_2_1:205272419-205272683:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2591247558594	2	473.261259	944.507966	-0.31869	-0.00015082	-2.6804	-0.0012685	-2.9991	-0.0014194	473.25981395835163	14.512	0.14523	14.512	14.383	14.529	0					11	7	2	0	0	0	0.75243	1	2983	2983		26.796	2.5934	1	36489	+		32489	18595	22553	22627	32893	32893					0.03349204617336454
RDPPLARFA	9	Unmodified	_RDPPLARFA_					0	0	0			REV__ENST00000481626.5_1_3:52553496-52554202:+|nuORF	REV__ENST00000481626.5_1_3:52553496-52554202:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.79296875	2	521.793258	1041.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.278	1	32.278	31.778	32.778	0								0	0	0	0.27025	1	12253	12253		40.778	1.972	1		+		32490	12896	22554	22628	32894	32894					0.05283984774268902
RDPRYTEF	8	Unmodified	_RDPRYTEF_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2628173828125	2	542.26453	1082.51451	-1.4864	-0.00080603	-1.2136	-0.00065811	-2.7	-0.0014641	542.2639159173385	14.365	0.077275	14.365	14.333	14.411	0					4	2	2	0	0	0	0.46013	1	3036	3036		63.306	1.1989	1	128050	+		32491	16206	22555	22629	32895	32895					-0.023449022219665494
RDQIKTWVA	9	Unmodified	_RDQIKTWVA_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3;CNOT3|p.P458Lfs*45|1|0.17|ENSG00000088038|chr19:54148705-54148705|C/-|frameshift_variant	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.8125610351562	2	558.811648	1115.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.117	1	13.117	12.617	13.617	0								0	0	0	0.3428	1	2965	2965		26.693	2.1737	1				32492	1772	22556	22630	32896	32896					0.05556236600182274
RDRDQACRQ	9	Unmodified	_RDRDQACRQ_					0	0	0			REV__ENST00000417753.5_1_3:48557182-48594149:-|nuORF	REV__ENST00000417753.5_1_3:48557182-48594149:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.2734375	2	574.272895	1146.53124	3.3416	0.001919	-2.8169	-0.0016177	0.52466	0.0003013	574.271551063402	26.928	0.72052	26.928	26.772	27.493	0					30	14	3	0	0	0	0.21419	1	9585	9585		62.107	12.571	1	1351800	+		32493	19045	22557	22631	32897	32897					-0.036167246076502124
RDREDREAL	9	Unmodified	_RDREDREAL_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.1985168457031	3	387.198659	1158.57415	-0.65153	-0.00025227	0.30599	0.00011848	-0.34553	-0.00013379	387.1987995262088	16.804	0.20976	16.804	16.747	16.957	0					6	4	2	0	0	0	0.40353	1	4739	4739		41.427	10.858	1	284930			32494	4370	22558	22632	32898	32898					0.001203687214456295
RDRELSLQ	8	Unmodified	_RDRELSLQ_					0	0	0			REV__FRMPD1|p.N1120Mfs*38|1|0.42|ENSG00000070601|chr9:37745387-37745387|A/-|frameshift_variant	REV__FRMPD1|p.N1120Mfs*38|1|0.42|ENSG00000070601|chr9:37745387-37745387|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7809143066406	2	508.777805	1015.54106	1.8185	0.0009252	2.7881	0.0014185	4.6065	0.0023437	508.77938301289595	27.495	0.11201	27.495	27.411	27.523	0					6	3	2	0	0	0	0.50061	1	8468	8468		60.118	1.3363	1	56678	+		32495	13175	22559	22633	32899	32899					0.03390786669388035
RDRGCGRAL	9	Unmodified	_RDRGCGRAL_					0	0	0		ENST00000348520.10_2_14:104175690-104176350:+|nuORF	ENST00000348520.10_2_14:104175690-104176350:+|nuORF	ENST00000348520.10_2_14:104175690-104176350:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2586975097656	2	502.264342	1002.51413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.635	1	15.635	15.135	16.135	0								0	0	0	0.27939	1	4314	4314		39.253	2.0937	1				32496	8768	22560	22634	32900	32900					0.0129739957720858
RDRGLVRPGS	10	Unmodified	_RDRGLVRPGS_					0	0	0		YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.81982421875	2	556.817796	1111.62104	3.5121	0.0019556	-0.13409	-7.4663E-05	3.378	0.0018809	556.8176727281993	37.778	0.74495	37.778	37.187	37.932	0					37	15	3	0	0	0	0.4758	1	14763	14763		47.96	47.96	1	712190			32497	3125	22561	22635	32901	32901					0.0696927306323687
RDRLMALIS	9	Unmodified	_RDRLMALIS_					0	0	0			REV__ENSG00000147697|ENST00000276708|GSDMC	REV__ENSG00000147697|ENST00000276708|GSDMC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8073120117188	2	537.808051	1073.60155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.615	1	28.615	28.115	29.115	0								0	0	0	0.14211	1	10504	10504		74.255	15.473	1		+		32498	15362	22562	22636	32902	32902					0.06769180728110769
RDSIELTK	8	Unmodified	_RDSIELTK_					0	0	0		CEP126|p.L630Tfs*5|1|0.5|ENSG00000110318|chr11:101962916-101962917|-/A|frameshift_variant;CEP126|p.L933Yfs*21|1|0.42|ENSG00000110318|chr11:101963829-101963829|C/-|frameshift_variant;ENSG00000110318|ENST00000263468|CEP126	CEP126|p.L630Tfs*5|1|0.5|ENSG00000110318|chr11:101962916-101962917|-/A|frameshift_variant	CEP126|p.L630Tfs*5|1|0.5|ENSG00000110318|chr11:101962916-101962917|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.26898193359375	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.634	1	13.634	13.134	14.134	0								0	0	0	1.7419	1	3145	3145		52.937	5.2794	1				32499	477	22563	22637	32903	32903					0.042168660635638844
RDSTMVLIA	9	Unmodified	_RDSTMVLIA_					0	0	0			REV__tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1	REV__tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.27313232421875	2	503.273509	1004.53247	-0.87364	-0.00043968	2.9172	0.0014682	2.0436	0.0010285	503.27456546539884	36.34	0.53543	36.34	36.023	36.559	0					62	26	4	0	0	0	0.27249	1	12257	12257		52.937	6.9645	1	720580	+		32500	21842	22564	22638	32904	32904					0.030380967085420707
RDSVLIQTL	9	Unmodified	_RDSVLIQTL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8056640625	2	522.806031	1043.59751	0.086664	4.5309E-05	0.13417	7.0146E-05	0.22084	0.00011545	522.8059972779193	40.279	0.27765	40.279	40.172	40.45	0					21	12	3	0	0	0	0.27123	1	15339	15339		53.089	5.1294	1	142480			32501	4854	22565	22639	32905	32905					0.07745414506052839
RDTLAKRL	8	Unmodified	_RDTLAKRL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.86981201171875	3	324.869814	971.587613	0.53356	0.00017334	-0.66763	-0.00021689	-0.13407	-4.3556E-05	324.86963637229144	19.302	0.41747	19.302	19.198	19.616	0					19	9	3	0	0	0	0.58478	1	5808	5808		51.528	8.6635	1	1316100			32502	1085	22566	22640	32906	32906					0.10068271291311248
RDTLAKRL	8	Unmodified	_RDTLAKRL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.86981201171875	3	324.869814	971.587613	0.55761	0.00018115	-0.67267	-0.00021853	-0.11506	-3.7379E-05	324.8696198032184	19.206	0.2154	19.206	19.148	19.363	0					9	4	3	0	0	0	0.65595	1	6040	6040		40.058	8.5284	1	865150			32503	1085	22566	22640	32907	32907					0.10068271291311248
RDTSARSR	8	Unmodified	_RDTSARSR_					0	0	0			REV__ENST00000309352.3_1_17:73901088-73901211:-|nuORF	REV__ENST00000309352.3_1_17:73901088-73901211:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7530212402344	2	474.752121	947.48969	0.61364	0.00029133	1.3712	0.00065096	1.9848	0.00094229	474.7527318566434	23.103	0.2178	23.103	22.995	23.212	0					11	4	3	0	0	0	0.41701	1	7926	7926		68.787	0	1	2238200	+		32504	18259	22567	22641	32908	32908					0.01384462695318689
RDVAKHRLV	9	Unmodified	_RDVAKHRLV_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.3330078125	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.436	1	45.436	44.936	45.936	0								0	0	0	0.37496	1	14630	14630		18.324	0.95945	1				32505	2788	22568	22642	32909	32909					0.10899051448268438
RDVGSGGDEI	10	Unmodified	_RDVGSGGDEI_					0	0	0		ENST00000538886.5_1_17:73233291-73233537:-|nuORF	ENST00000538886.5_1_17:73233291-73233537:-|nuORF	ENST00000538886.5_1_17:73233291-73233537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7377014160156	2	502.735803	1003.45705	2.9268	0.0014714	0.51434	0.00025858	3.4412	0.00173	502.73619365660375	30.269	0.21309	30.269	30.163	30.376	0					8	4	3	0	0	0	0.49411	1	11201	11201		45.972	1.5951	1	571790			32506	10516	22569	22643	32910	32910					-0.04453789218177917
RDVIMREF	8	Unmodified	_RDVIMREF_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000461021.1_1_3:186505247-186505672:+|nuORF;ENST00000494445.1_1_3:186505247-186506105:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581808.1_1_17:7481021-7481457:+|nuORF;ENST00000587313.1_1_18:12913551-12913704:+|nuORF;ENST00000485101.5_1_3:186505247-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2797241210938	2	533.279126	1064.5437	2.324	0.0012393	-1.2938	-0.00068993	1.0302	0.0005494	533.2784455310046	32.433	0.2529	32.433	32.342	32.595	0					15	6	3	0	0	0	0.2592	1	11916	11916		96.034	43.734	1	315420			32507	5432;5192	22570	22644	32911	32911					0.014009188026875563
RDVIMREF	8	Unmodified	_RDVIMREF_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000461021.1_1_3:186505247-186505672:+|nuORF;ENST00000494445.1_1_3:186505247-186506105:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581808.1_1_17:7481021-7481457:+|nuORF;ENST00000587313.1_1_18:12913551-12913704:+|nuORF;ENST00000485101.5_1_3:186505247-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.278564453125	2	533.279126	1064.5437	1.0912	0.00058191	-0.98724	-0.00052647	0.10395	5.5436E-05	533.2786692290273	32.423	0.18009	32.423	32.331	32.511	0					7	4	2	0	0	0	0.71588	1	12314	12314		31.53	2.3803	1	54169			32508	5432;5192	22570	22644	32912	32912					0.014009188026875563
RDVIMREF	8	Unmodified	_RDVIMREF_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000461021.1_1_3:186505247-186505672:+|nuORF;ENST00000494445.1_1_3:186505247-186506105:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581808.1_1_17:7481021-7481457:+|nuORF;ENST00000587313.1_1_18:12913551-12913704:+|nuORF;ENST00000485101.5_1_3:186505247-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2796630859375	2	533.279126	1064.5437	0.71554	0.00038158	0.49628	0.00026466	1.2118	0.00064624	533.2793455015213	32.379	0.51877	32.379	32.27	32.789	0					18	10	3	0	0	0	0.44767	1	12212	12212		65.465	24.893	1	493220			32509	5432;5192	22570	22644	32913	32913					0.014009188026875563
RDVIMREF	8	Unmodified	_RDVIMREF_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000461021.1_1_3:186505247-186505672:+|nuORF;ENST00000494445.1_1_3:186505247-186506105:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581808.1_1_17:7481021-7481457:+|nuORF;ENST00000587313.1_1_18:12913551-12913704:+|nuORF;ENST00000485101.5_1_3:186505247-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2802124023438	2	533.279126	1064.5437	1.7875	0.00095324	-0.60827	-0.00032438	1.1792	0.00062886	533.2790947713921	32.363	0.42018	32.363	32.153	32.573	0					18	8	3	0	0	0	0.38291	1	12204	12204		72.879	18.115	1	524260			32510	5432;5192	22570	22644	32914	32914					0.014009188026875563
RDVKALTL	8	Unmodified	_RDVKALTL_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.28436279296875	2	458.284734	914.554916	-0.64509	-0.00029563	0.079013	3.6211E-05	-0.56607	-0.00025942	458.2847427650934	27.83	0.2732	27.83	27.692	27.965	0					14	6	3	0	0	0	0.48504	1	9772	9772		61.691	2.9093	1	1000000			32511	3877	22571	22645	32915	32915					0.09422064168461475
RDVKALTL	8	Unmodified	_RDVKALTL_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2841491699219	2	458.284734	914.554916	-1.1271	-0.00051651	0.89362	0.00040953	-0.23344	-0.00010698	458.2850133748652	27.552	0.15824	27.552	27.485	27.643	0					10	5	2	0	0	0	0.62515	1	8781	8781		45.022	7.2107	1	132030			32512	3877	22571	22645	32916	32916					0.09422064168461475
RDVPVVRL	8	Unmodified	_RDVPVVRL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D82Ifs*30|1|0.43|ENSG00000151348|chr11:44107951-44107951|G/-|frameshift_variant;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2972106933594	2	477.298176	952.581799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.499	1	30.499	29.999	30.999	0								0	0	0	1.7419	1	11407	11407		62.107	6.6032	1				32513	4957	22572	22646	32917	32917					0.10361172779664685
RDVPVVRL	8	Unmodified	_RDVPVVRL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D82Ifs*30|1|0.43|ENSG00000151348|chr11:44107951-44107951|G/-|frameshift_variant;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.29815673828125	2	477.298176	952.581799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.478	1	30.478	29.978	30.978	0								0	0	0	1.7419	1	11288	11288		66.429	10.925	1				32514	4957	22572	22646	32918	32918					0.10361172779664685
RDVSPPHL	8	Unmodified	_RDVSPPHL_					0	0	0		ENST00000461320.5_1_1:150239547-150241394:-|nuORF	ENST00000461320.5_1_1:150239547-150241394:-|nuORF	ENST00000461320.5_1_1:150239547-150241394:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7508850097656	2	460.751059	919.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.051	1	23.051	22.551	23.551	0								0	0	0	1.7419	1	7576	7576		50.025	7.5501	1				32515	9731	22573	22647	32919	32919					0.024600339575158614
RDYETATL	8	Unmodified	_RDYETATL_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.73760986328125	2	484.737814	967.461075	-0.22078	-0.00010702	-0.19419	-9.4129E-05	-0.41497	-0.00020115	484.73776261411325	28.804	0.3687	28.804	28.719	29.087	0					24	9	4	0	0	0	0.3049	1	10224	10224		82.241	27.464	1	1660400			32516	3641	22574	22648	32920	32920					-0.023956997244795275
REAEALTQRL	10	Unmodified	_REAEALTQRL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.8309326171875	2	593.830569	1185.64658	1.5189	0.00090194	-1.1783	-0.00069972	0.34054	0.00020223	593.8300676129224	27.161	0.266	27.161	27.055	27.321	0					13	5	3	0	0	0	0.39647	1	9823	9823		56.632	17.879	1	714220			32517	2348	22575	22649	32921	32921					0.06118702794992714
REAEERVQKSL	11	Unmodified	_REAEERVQKSL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.9124450683594	3	448.912519	1343.71573	0.12046	5.4075E-05	-1.2311	-0.00055266	-1.1107	-0.00049859	448.91236200602697	19.588	0.15581	19.588	19.492	19.647	0					7	3	3	0	0	0	0.43096	1	5927	5927		49.28	14.128	1	195390			32518	6707	22576	22650	32922	32922					0.05761742023901206
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	582.2807006835938	2	582.280574	1162.5466	0.56847	0.00033101	-0.19513	-0.00011362	0.37334	0.00021739	582.2804522496857	21.271	0.27635	21.271	21.162	21.438	0					16	8	3	0	0	0	0.1998	1	5819	5819		79.489	14.024	1	660170			32519	3441	22577	22651	32923	32923					-0.028175793294849427
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.2806396484375	2	582.280574	1162.5466	-0.0094993	-5.5312E-06	0.27986	0.00016296	0.27037	0.00015743	582.2807798820378	21.605	0.31889	21.605	21.504	21.823	0					22	7	5	0	0	0	0.075264	1	6877	6877		100.82	31.192	1	4541400			32520	3441	22577	22651	32924	32924					-0.028175793294849427
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.280517578125	2	582.280574	1162.5466	-0.18282	-0.00010645	0.61088	0.00035571	0.42806	0.00024925	582.2810299224623	21.319	0.20489	21.319	21.223	21.428	0					12	6	3	0	0	0	0.33224	1	6093	6093		63.694	23.636	1	285950			32521	3441	22577	22651	32925	32925					-0.028175793294849427
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.2810668945312	2	582.280574	1162.5466	-0.32362	-0.00018844	0.95493	0.00055604	0.63131	0.0003676	582.2815173063897	21.5	0.21766	21.5	21.441	21.658	0					7	4	3	0	0	0	0.5155	1	7153	7153		43.651	6.4917	1	310140			32522	3441	22577	22651	32926	32926					-0.028175793294849427
REAEGQLQKL	10	Unmodified	_REAEGQLQKL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.3251342773438	2	586.325119	1170.63569	-0.32537	-0.00019077	0.036689	2.1512E-05	-0.28868	-0.00016926	586.3251775099064	23.184	0.13238	23.184	23.12	23.252	0					7	4	2	0	0	0	0.58308	1	6954	6954		36.318	4.6834	1	112450			32523	6707	22578	22652	32927	32927					0.057193004207192644
REAEGQLQKL	10	Unmodified	_REAEGQLQKL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.3255004882812	2	586.325119	1170.63569	1.4779	0.00086654	-0.8116	-0.00047586	0.66631	0.00039068	586.3247564931754	23.378	0.21597	23.378	23.268	23.484	0					7	4	2	0	0	0	0.1998	1	7933	7933		79.489	5.3241	1	619000			32524	6707	22578	22652	32928	32928					0.057193004207192644
REAEQRRAYL	10	Unmodified	_REAEQRRAYL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	646.3471069335938	2	646.346917	1290.67928	0.42117	0.00027222	-0.37235	-0.00024067	0.048817	3.1553E-05	646.3465905159011	19.255	0.28656	19.255	19.155	19.441	0					12	6	3	0	0	0	0.13022	1	5789	5789		109.48	46.052	1	472080			32525	7903	22579	22653	32929	32929					0.04556909917846497
REAEQRRAYL	10	Unmodified	_REAEQRRAYL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	646.346923828125	2	646.346917	1290.67928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.183	1	19.183	18.683	19.683	0								0	0	0	0.41234	1	6020	6020		28.081	3.5623	1				32526	7903	22579	22653	32930	32930					0.04556909917846497
REAEQSNVAL	10	Unmodified	_REAEQSNVAL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7862548828125	2	558.785827	1115.5571	0.52507	0.0002934	0.43874	0.00024516	0.9638	0.00053856	558.7860658849477	24.939	0.20731	24.939	24.852	25.06	0					12	5	3	0	0	0	0.36647	1	8466	8466		59.931	3.497	1	565690			32527	4543	22580	22654	32931	32931					0.003944481156167967
REAGAGGLSI	10	Unmodified	_REAGAGGLSI_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000136068|O75369-8|FLNB;FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.75347900390625	2	465.753798	929.493044	-0.67555	-0.00031464	0.26517	0.00012351	-0.41037	-0.00019113	465.7537825289257	30.779	0.31365	30.779	30.641	30.955	0					11	7	3	0	0	0	0.44292	1	11145	11145		51.528	3.8704	1	548190			32528	4052;3551	22581	22655	32932	32932					0.025477127493559237
REAHLVDP	8	Unmodified	_REAHLVDP_					0	0	0			REV__nc|ENSG00000197721|Q2VPA4-2|CR1L	REV__nc|ENSG00000197721|Q2VPA4-2|CR1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7483215332031	2	468.748516	935.482479	0.63035	0.00029547	-1.9001	-0.00089065	-1.2697	-0.00059518	468.7476728837862	27.791	0.68731	27.791	27.554	28.241	0					20	14	3	0	0	0	0.61938	1	10107	10107		45.952	3.0877	1	390000	+		32529	12635	22582	22656	32933	32933					0.012157300948956618
REAIQCVDN	9	Unmodified	_REAIQCVDN_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.2490234375	2	524.248023	1046.48149	0.71948	0.00037719	0.68247	0.00035778	1.402	0.00073497	524.2483945355998	27.844	1.0508	27.844	27.458	28.509	0					87	35	3	0	0	0	0.39215	1	8879	8879		42.396	3.1433	1	1796400			32530	1186	22583	22657	32934	32934					-0.039888523363288186
REANFTVSSM	10	Unmodified	_REANFTVSSM_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.2691040039062	2	571.268955	1140.52336	-0.028577	-1.6325E-05	0.11085	6.3324E-05	0.082271	4.6999E-05	571.2689864904107	33.413	0.33193	33.413	33.288	33.62	0					18	8	3	0	0	0	0.09653	1	12357	12357		96.034	40.529	1	540410			32531	4457	22584	22658	32935	32935					-0.04128296647786556
REANFTVSSM	10	Unmodified	_REANFTVSSM_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.2689819335938	2	571.268955	1140.52336	-1.3907	-0.00079445	1.9838	0.0011333	0.59309	0.00033882	571.2703275318798	33.215	0.18127	33.215	33.111	33.292	0					10	5	2	0	0	0	0.35046	1	11620	11620		61.691	12.25	1	129600			32532	4457	22584	22658	32936	32936					-0.04128296647786556
REAPERPSL	9	Unmodified	_REAPERPSL_					0	0	0		nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENSG00000107672|ENST00000369023|NSMCE4A;ENST00000489266.5_1_10:123734227-123734680:-|nuORF	nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7855224609375	2	527.78563	1053.55671	0.92883	0.00049022	-0.30732	-0.0001622	0.62151	0.00032802	527.7854583709081	22.419	0.60658	22.419	22.07	22.677	0					26	12	3	0	0	0	0.12278	1	7551	7551		74.165	19.389	1	457630			32533	2491	22585	22659	32937	32937					0.03207073186422349
REAPERPSL	9	Unmodified	_REAPERPSL_					0	0	0		nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENSG00000107672|ENST00000369023|NSMCE4A;ENST00000489266.5_1_10:123734227-123734680:-|nuORF	nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7859497070312	2	527.78563	1053.55671	0.67574	0.00035665	0.10007	5.2816E-05	0.77582	0.00040946	527.7856261841077	22.409	0.56783	22.409	22.037	22.605	0					23	11	3	0	0	0	0.035106	1	7432	7432		104.01	21.773	1	496490			32534	2491	22585	22659	32938	32938					0.03207073186422349
REAPLPERS	9	Unmodified	_REAPLPERS_					0	0	0			REV__ENST00000398998.1_2_21:38610885-38639768:-|nuORF	REV__ENST00000398998.1_2_21:38610885-38639768:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7858276367188	2	527.78563	1053.55671	2.0093	0.0010605	-0.47597	-0.00025121	1.5334	0.00080928	527.7853957618051	22.493	0.41009	22.493	22.265	22.676	0					22	9	3	0	0	0	0.12834	1	7265	7265		72.879	14.649	1	298720	+		32535	18928	22586	22660	32939	32939					0.03207073186422349
REAPSPQV	8	Unmodified	_REAPSPQV_					0	0	0		ENST00000396061.5_1_15:59949592-59949661:-|nuORF	ENST00000396061.5_1_15:59949592-59949661:-|nuORF	ENST00000396061.5_1_15:59949592-59949661:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.901123046875	2	442.235242	882.45593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.597	1	13.597	13.097	14.097	0								0	0	0	1.7419	1	2759	2759		40.778	0	1				32536	9202	22587	22661	32940	32940					0.010000412035651607
REAQVNVRM	9	Unmodified	_REAQVNVRM_					0	0	0		THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant;ENSG00000054118|ENST00000354618|THRAP3	THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant	THRAP3|p.T757Nfs*6|1|0.18|ENSG00000054118|chr1:36296730-36296731|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7927856445312	2	551.792932	1101.57131	0.45083	0.00024876	-0.39342	-0.00021709	0.057406	3.1676E-05	551.792968606112	22.919	0.11643	22.919	22.811	22.927	0					4	2	2	0	0	0	0.28504	1	7817	7817		51.528	12.275	1	150030			32537	1265	22588	22662	32941	32941					0.02458822062908439
REAVEQQKV	9	Unmodified	_REAVEQQKV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8001098632812	2	543.798737	1085.58292	0.39473	0.00021465	1.1798	0.00064157	1.5745	0.00085623	543.7995829438054	17.01	0.12145	17.01	16.939	17.061	0					8	4	3	0	0	0	0.037712	1	4179	4179		101.46	19.219	1	279160			32538	3441	22589	22663	32942	32942					0.043553423578941874
REAVEQQKV	9	Unmodified	_REAVEQQKV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7984008789062	2	543.798737	1085.58292	2.0518	0.0011157	-0.30281	-0.00016467	1.7489	0.00095108	543.7983393026068	17.018	0.1144	17.018	16.943	17.058	0					6	3	2	0	0	0	0.17062	1	4148	4148		65.157	5.039	1	187300			32539	3441	22589	22663	32943	32943					0.043553423578941874
REAVEQQKV	9	Unmodified	_REAVEQQKV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7998657226562	2	543.798737	1085.58292	1.0871	0.00059116	1.1188	0.00060842	2.2059	0.0011996	543.7992568466059	17.002	0.15375	17.002	16.93	17.084	0					9	4	3	0	0	0	0.022525	1	4158	4158		117.81	30.057	1	280280			32540	3441	22589	22663	32944	32944					0.043553423578941874
REAVEQQKV	9	Unmodified	_REAVEQQKV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7991943359375	2	543.798737	1085.58292	0.60042	0.00032651	0.28465	0.00015479	0.88508	0.0004813	543.7989248738495	17.201	0.30573	17.201	17.09	17.396	0					12	6	3	0	0	0	0.032181	1	4927	4927		106.88	2.1337	1	1721500			32541	3441	22589	22663	32945	32945					0.043553423578941874
REAVEQQKV	9	Unmodified	_REAVEQQKV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7991333007812	2	543.798737	1085.58292	1.9928	0.0010837	-1.1174	-0.00060765	0.87537	0.00047603	543.7980949059652	17.184	0.16929	17.184	17.124	17.293	0					10	3	4	0	0	0	0.029571	1	4919	4919		109.44	13.624	1	4033100			32542	3441	22589	22663	32946	32946					0.043553423578941874
REAVSKTAL	9	Unmodified	_REAVSKTAL_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7849426269531	2	487.785099	973.555644	-0.08138	-3.9696E-05	0.20923	0.00010206	0.12785	6.2363E-05	487.7849196651574	19.339	0.11574	19.339	19.281	19.396	0					6	2	3	0	0	0	0.076532	1	6106	6106		85.862	11.607	1	482900			32543	1711	22590	22664	32947	32947					0.06780858817501212
RECERVFDKI	10	Unmodified	_RECERVFDKI_					0	0	0		nc|ENSG00000118156|Q9H0D2-2|ZNF541;ENSG00000118156|ENST00000391901|ZNF541	nc|ENSG00000118156|Q9H0D2-2|ZNF541	nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	647.8300170898438	2	647.832254	1293.64996	-2.3549	-0.0015256	-1.0956	-0.00070975	-3.4505	-0.0022354	647.83144317495	28.185	0.38161	28.185	28.095	28.477	0					24	9	4	0	0	0	0.081767	1	9330	9330		98.629	8.0285	1	1134300			32544	3064	22591	22665	32948	32948					0.014876295773319725
REDAARAIA	9	Unmodified	_REDAARAIA_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7645263671875	2	486.764697	971.514842	0.37693	0.00018348	-0.76397	-0.00037187	-0.38704	-0.0001884	486.76438032308215	18.278	0.14369	18.278	18.182	18.326	0					5	3	2	0	0	0	0.15163	1	5323	5323		67.494	10.773	1	666620			32545	3675	22592	22666	32949	32949					0.02794517497875404
REDAVHAMNNL	11	Unmodified	_REDAVHAMNNL_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47;RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	635.3037719726562	2	635.303861	1268.59317	-0.74917	-0.00047595	1.1579	0.0007356	0.40869	0.00025964	635.3046242698346	28.208	0.092054	28.208	28.119	28.211	0					5	3	2	0	0	0	0.63225	1	9065	9065		34.087	3.5176	1	77155			32546	5595	22593	22667	32950	32950					-0.030384179791553834
REDDPVRML	9	Unmodified	_REDDPVRML_					0	0	0		IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.784912109375	2	565.784773	1129.55499	1.7714	0.0010022	-1.1782	-0.00066661	0.59321	0.00033563	565.7842692851926	32.057	0.57383	32.057	31.779	32.353	0					27	14	3	0	0	0	0.44593	1	11693	11693		37.812	12.237	1	455390			32547	963	22594	22668	32951	32951					-0.0046030389382849535
REDDPVRML	9	Unmodified	_REDDPVRML_					0	0	0		IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.7853393554688	2	565.784773	1129.55499	0.77292	0.00043731	-0.12654	-7.1596E-05	0.64638	0.00036571	565.7848693849658	32.055	0.39838	32.055	31.861	32.259	0					16	8	3	0	0	0	0.55048	1	12099	12099		27.047	2.5281	1	164680			32548	963	22594	22668	32952	32952					-0.0046030389382849535
REDDPVRML	9	Unmodified	_REDDPVRML_					0	0	0		IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.78515625	2	565.784773	1129.55499	1.7063	0.00096538	-0.9853	-0.00055747	0.72097	0.00040791	565.7843332092604	31.996	0.46814	31.996	31.751	32.219	0					25	9	4	0	0	0	0.15163	1	12038	12038		67.494	4.1874	1	575810			32549	963	22594	22668	32953	32953					-0.0046030389382849535
REDEKPLVL	9	Unmodified	_REDEKPLVL_					0	0	0		ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8116455078125	2	549.811313	1097.60807	0.48196	0.00026499	0.23688	0.00013024	0.71884	0.00039522	549.8113550208054	28.915	0.25886	28.915	28.778	29.037	0					12	5	3	0	0	0	0.38666	1	10645	10645		42.864	5.0528	1	193140			32550	1845	22595	22669	32954	32954					0.06317397160455585
REDGRGVCV	9	Carbamidomethyl (C)	_REDGRGVC(Carbamidomethyl (C))V_	REDGRGVC(1)V		REDGRGVC(59)V		0	1	0		ENST00000300134.7_1_12:57504946-57505147:-|nuORF	ENST00000300134.7_1_12:57504946-57505147:-|nuORF	ENST00000300134.7_1_12:57504946-57505147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2538452148438	2	524.25364	1046.49273	1.794	0.0009405	0.025602	1.3422E-05	1.8196	0.00095392	524.2530179939697	15.179	0.095364	15.179	15.117	15.212	0					4	2	2	0	0	0	0.22377	1	3872	3872		58.782	11.125	1	100090			32551	8482	22596	22670	32955	32955	370				-0.028660302421712913
REDKPPLAV	9	Unmodified	_REDKPPLAV_					0	0	0		PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENST00000512807.1_1_3:129278266-129279214:-|nuORF	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7930297851562	2	512.792924	1023.57129	1.074	0.00055071	-0.69918	-0.00035854	0.37477	0.00019218	512.7925884234045	25.587	0.56779	25.587	25.148	25.716	0					20	13	2	0	0	0	0.30257	1	8757	8757		50.034	4.0613	1	432160			32552	938	22597	22671	32956	32956					0.0604514533456495
REDKPPLAV	9	Unmodified	_REDKPPLAV_					0	0	0		PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENST00000512807.1_1_3:129278266-129279214:-|nuORF	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7927856445312	2	512.792924	1023.57129	1.4351	0.00073592	-1.084	-0.00055588	0.35108	0.00018003	512.7923804838321	25.457	0.67157	25.457	24.996	25.667	0					29	13	3	0	0	0	0.13726	1	8928	8928		70.816	21.28	1	922390			32553	938	22597	22671	32957	32957					0.0604514533456495
REDLVEKN	8	Unmodified	_REDLVEKN_					0	0	0		PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant;PCM1|p.I260Sfs*14|1|0.44|ENSG00000078674|chr8:17939850-17939850|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7644958496094	2	501.764363	1001.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.514	1	23.514	23.014	24.014	0								0	0	0	1.7419	1	8111	8111		58.782	5.693	1				32554	11912	22598	22672	32958	32958					0.013476780581868297
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.2880859375	2	573.286525	1144.5585	1.4724	0.0008441	0.9247	0.00053012	2.3971	0.0013742	573.2870664391368	16.703	0.17521	16.703	16.632	16.808	0					10	6	3	0	0	0	0.015496	1	3856	3856		129.42	41.244	1	191730			32555	1768	22599	22673	32959	32959					-0.007999177956207859
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.28662109375	2	573.286525	1144.5585	1.0685	0.00061253	-0.81565	-0.0004676	0.2528	0.00014493	573.2861787494722	16.717	0.12362	16.717	16.627	16.75	0					10	4	3	0	0	0	0.095583	1	3849	3849		80.455	20.336	1	248230			32556	1768	22599	22673	32960	32960					-0.007999177956207859
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.2870483398438	2	573.286525	1144.5585	1.6906	0.00096922	-1.3649	-0.00078247	0.32575	0.00018675	573.2857135374892	17.021	0.25621	17.021	16.94	17.197	0					18	6	4	0	0	0	0.017421	1	4719	4719		126.24	38.488	1	2523700			32557	1768	22599	22673	32961	32961					-0.007999177956207859
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.2864990234375	2	573.286525	1144.5585	-0.12455	-7.1404E-05	0.64866	0.00037187	0.52411	0.00030047	573.2869434064394	17.015	0.17362	17.015	16.929	17.102	0					14	4	4	0	0	0	0.015496	1	4715	4715		129.42	41.244	1	2057800			32558	1768	22599	22673	32962	32962					-0.007999177956207859
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.2861328125	2	573.286525	1144.5585	0.071738	4.1127E-05	0.38378	0.00022001	0.45551	0.00026114	573.2868389508013	16.774	0.33201	16.774	16.699	17.031	0					30	13	4	0	0	0	0.11411	1	4070	4070		76.17	7.3829	1	2208700			32559	1768	22599	22673	32963	32963					-0.007999177956207859
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.2868041992188	2	573.286525	1144.5585	0.61151	0.00035057	-0.36218	-0.00020763	0.24933	0.00014294	573.28629675143	16.809	0.29908	16.809	16.711	17.01	0					17	8	4	0	0	0	0.0088974	1	4052	4052		143.37	57.512	1	1368700			32560	1768	22599	22673	32964	32964					-0.007999177956207859
REDPTTRGRL	10	Unmodified	_REDPTTRGRL_					0	0	0		ENST00000412770.6_2_19:55758407-55770251:-|nuORF	ENST00000412770.6_2_19:55758407-55770251:-|nuORF	ENST00000412770.6_2_19:55758407-55770251:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.8861999511719	3	400.886304	1199.63708	0.93945	0.00037661	-1.2708	-0.00050946	-0.33137	-0.00013284	400.8857940904287	14.58	0.1295	14.58	14.536	14.666	0					9	3	3	0	0	0	0.70877	1	3593	3593		32.751	19.793	1	324890			32561	9320	22600	22674	32965	32965					0.045249345094589444
REDQKPVM	8	Unmodified	_REDQKPVM_					0	0	0		ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF;nc|ENSG00000019582|P04233-2|CD74;ENSG00000019582|ENST00000009530|CD74	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7553405761719	2	501.755484	1001.49641	0.043178	2.1665E-05	-0.59611	-0.0002991	-0.55294	-0.00027744	501.7552990060138	17.559	0.26828	17.559	17.5	17.768	0					13	5	4	0	0	0	0.44767	1	5245	5245		65.465	19.513	1	1354100			32562	1097	22601	22675	32966	32966					-0.0042736046831350905
REDQKPVM	8	Unmodified	_REDQKPVM_					0	0	0		ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF;nc|ENSG00000019582|P04233-2|CD74;ENSG00000019582|ENST00000009530|CD74	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7552795410156	2	501.755484	1001.49641	-0.55272	-0.00027733	0.1304	6.5431E-05	-0.42231	-0.0002119	501.75562626505814	17.539	0.27022	17.539	17.43	17.7	0					14	5	4	0	0	0	0.48092	1	5088	5088		62.107	3.3255	1	1998400			32563	1097	22601	22675	32967	32967					-0.0042736046831350905
REDQVILRL	9	Unmodified	_REDQVILRL_					0	0	0		ENST00000566774.1_1_16:68264768-68266536:-|nuORF;ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENST00000566774.1_1_16:68264768-68266536:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.338623046875	2	571.33803	1140.66151	1.748	0.00099872	-1.0351	-0.00059141	0.71291	0.00040731	571.3373669601807	36.806	0.2386	36.806	36.713	36.952	0					15	6	3	0	0	0	0.095583	1	13910	13910		80.455	11.608	1	231020			32564	2211	22602	22676	32968	32968					0.09680194662996655
REDREEQIQ	9	Unmodified	_REDREEQIQ_					0	0	0			REV__ENST00000470400.5_1_3:142720470-142740424:+|nuORF;REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.7939453125	2	601.79164	1201.56873	3.0868	0.0018576	0.61708	0.00037135	3.7038	0.0022289	601.7919702201128	15.238	0.16928	15.238	15.178	15.347	0					5	3	2	0	0	0	0.2873	1	3988	3988		51.335	3.6781	1	369300	+		32565	19467;15912	22603	22677	32969	32969					-0.023993548610405924
REDRLNVAA	9	Unmodified	_REDRLNVAA_					0	0	0			REV__ENSG00000230778|ENST00000434396|ANKRD63	REV__ENSG00000230778|ENST00000434396|ANKRD63	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2840576171875	2	522.283254	1042.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.185	1	39.185	38.685	39.685	0								0	0	0	0.30504	1	13182	13182		34.173	1.3601	1		+		32566	17644	22604	22678	32970	32970					0.032381890436681715
REDSKPHSL	9	Unmodified	_REDSKPHSL_					0	0	0		ATRIP|p.L345Cfs*31|3|0.28|ENSG00000164053|chr3:48459889-48459889|C/-|frameshift_variant;nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	ATRIP|p.L345Cfs*31|3|0.28|ENSG00000164053|chr3:48459889-48459889|C/-|frameshift_variant	ATRIP|p.L345Cfs*31|3|0.28|ENSG00000164053|chr3:48459889-48459889|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.775390625	2	534.775262	1067.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.134	1	15.134	14.634	15.634	0								0	0	0	0.25587	1	4077	4077		42.864	2.2917	1				32567	259	22605	22679	32971	32971					0.004904828067765266
REDSQRPGA	9	Unmodified	_REDSQRPGA_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000391992.3_1_12:9180728-9181528:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.25006103515625	2	508.249412	1014.48427	0.98323	0.00049972	-0.16833	-8.5551E-05	0.8149	0.00041417	508.249307291114	13.17	0.19772	13.17	13.056	13.254	0					7	5	2	0	0	0	0.026538	1	2929	2929		112.41	0	1	143730			32568	517	22606	22680	32972	32972					-0.02239260887142791
REDSQRPGA	9	Unmodified	_REDSQRPGA_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000391992.3_1_12:9180728-9181528:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2496337890625	2	508.249412	1014.48427	0.18356	9.3296E-05	-0.21842	-0.00011101	-0.034859	-1.7717E-05	508.2492660868962	13.167	0.33889	13.167	13.067	13.406	0					12	7	3	0	0	0	0.048471	1	3130	3130		95.815	8.1187	1	546290			32569	517	22606	22680	32973	32973					-0.02239260887142791
REDSQRPGA	9	Unmodified	_REDSQRPGA_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000391992.3_1_12:9180728-9181528:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2495422363281	2	508.249412	1014.48427	-0.10855	-5.5171E-05	0.23779	0.00012086	0.12924	6.5688E-05	508.24959334620553	13.119	0.30457	13.119	13.018	13.323	0					12	6	3	0	0	0	0.063171	1	2976	2976		90.601	13.283	1	353290			32570	517	22606	22680	32974	32974					-0.02239260887142791
REDSQRPGAHL	11	Unmodified	_REDSQRPGAHL_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000391992.3_1_12:9180728-9181528:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	633.3204345703125	2	633.320899	1264.62725	-0.73921	-0.00046816	0.57805	0.00036609	-0.16116	-0.00010207	633.3214904276001	17.416	0.11011	17.416	17.365	17.475	0					6	4	2	0	0	0	0.44591	1	4363	4363		46.457	5.6786	1	123640			32571	517	22607	22681	32975	32975					0.005517465041066316
REDSQRPGAHL	11	Unmodified	_REDSQRPGAHL_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000391992.3_1_12:9180728-9181528:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.5497131347656	3	422.549692	1264.62725	-0.20293	-8.575E-05	0.13047	5.5128E-05	-0.072469	-3.0622E-05	422.5498108613912	17.659	0.26979	17.659	17.6	17.87	0					9	5	3	0	0	0	0.54316	1	5294	5294		41.08	1.0219	1	927790			32572	517	22607	22681	32976	32976					0.005517465041066316
REDTKAAVL	9	Unmodified	_REDTKAAVL_					0	0	0		DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant;DDX54|p.R734Lfs*97|1|0.27|ENSG00000123064|chr12:113161992-113161992|C/-|frameshift_variant;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant	DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.782470703125	2	501.782556	1001.55056	0.04168	2.0914E-05	-0.54585	-0.0002739	-0.50417	-0.00025298	501.78227003998194	20.587	0.11612	20.587	20.529	20.645	0					6	2	3	0	0	0	0.30841	1	6708	6708		49.536	8.1094	1	288200			32573	764	22608	22682	32977	32977					0.04984554954910436
REEAERQRL	9	Unmodified	_REEAERQRL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.818115234375	2	593.817993	1185.62143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.287	1	16.287	15.787	16.787	0								0	0	0	0.12732	1	4381	4381		58.23	18.172	1				32574	3009	22609	22683	32978	32978					0.03604647992438004
REEARLQRE	9	Unmodified	_REEARLQRE_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.2144470214844	3	396.214421	1185.62143	0.40006	0.00015851	-0.44828	-0.00017761	-0.048219	-1.9105E-05	396.21431323505317	16.242	0.16825	16.242	16.131	16.3	0					6	3	2	0	0	0	0.54081	1	4470	4470		28.081	0	1	589640	+		32575	15717	22610	22684	32979	32979					0.03604647992415266
REEEKSINEKK	11	Unmodified	_REEEKSINEKK_					0	0	0			REV__nc|ENSG00000131269|O75027-3|ABCB7	REV__nc|ENSG00000131269|O75027-3|ABCB7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	695.3678588867188	2	695.370255	1388.72596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.842	1	30.842	30.342	31.342	0								0	0	0	0.45674	1	9866	9866		16.717	2.5803	1		+		32576	14615	22611	22685	32980	32980					0.04714304958451976
REEEKVSAV	9	Unmodified	_REEEKVSAV_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.778076171875	2	523.77747	1045.54039	2.2177	0.0011616	-1.6167	-0.00084677	0.601	0.00031479	523.776738244391	17.937	0.097462	17.937	17.89	17.988	0					6	2	3	0	0	0	0.076532	1	4388	4388		85.862	18.368	1	235030			32577	4371	22612	22686	32981	32981					0.019439472296653548
REEEKVSAV	9	Unmodified	_REEEKVSAV_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.77783203125	2	523.77747	1045.54039	2.0535	0.0010756	-1.4264	-0.00074712	0.62711	0.00032847	523.7766256223665	18.278	0.31912	18.278	18.182	18.501	0					16	7	4	0	0	0	0.026848	1	5303	5303		112.11	23.93	1	3503100			32578	4371	22612	22686	32982	32982					0.019439472296653548
REEEKVSAV	9	Unmodified	_REEEKVSAV_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7776489257812	2	523.77747	1045.54039	1.0232	0.00053591	-0.56396	-0.00029539	0.4592	0.00024052	523.7770838060591	18.216	0.37096	18.216	18.105	18.476	0					22	7	4	0	0	0	0.037712	1	5562	5562		101.46	13.763	1	3053200			32579	4371	22612	22686	32983	32983					0.019439472296653548
REEGLLLEP	9	Unmodified	_REEGLLLEP_					0	0	0			REV__nc|ENSG00000167258|Q9NYV4-3|CDK12	REV__nc|ENSG00000167258|Q9NYV4-3|CDK12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2926635742188	2	528.290214	1054.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.248	1	42.248	41.748	42.748	0								0	0	0	0.34845	1	16587	16587		25.574	0	1		+		32580	12404	22613	22687	32984	32984					0.04077421752117516
REELGRLA	8	Unmodified	_REELGRLA_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2694091796875	2	472.269616	942.524678	0.21058	9.945E-05	-0.37213	-0.00017575	-0.16155	-7.6296E-05	472.2692527551193	21.784	0.18491	21.784	21.696	21.881	0					7	4	2	0	0	0	0.43813	1	6987	6987		66.429	2.222	1	652140			32581	5591	22614	22688	32985	32985					0.05111705503293251
REELGRLA	8	Unmodified	_REELGRLA_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2693786621094	2	472.269616	942.524678	-0.12319	-5.8178E-05	-0.55942	-0.00026419	-0.6826	-0.00032237	472.2693588106123	21.734	0.31403	21.734	21.625	21.939	0					10	6	2	0	0	0	0.43813	1	7236	7236		66.429	2.222	1	2108000			32582	5591	22614	22688	32986	32986					0.05111705503293251
REELGRLA	8	Unmodified	_REELGRLA_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2696533203125	2	472.269616	942.524678	-0.16672	-7.8736E-05	0.64321	0.00030377	0.47649	0.00022503	472.269818453239	21.591	0.15818	21.591	21.499	21.657	0					7	4	2	0	0	0	0.69548	1	6280	6280		34.173	1.3601	1	222880			32583	5591	22614	22688	32987	32987					0.05111705503293251
REELGRLA	8	Unmodified	_REELGRLA_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.269287109375	2	472.269616	942.524678	-0.56556	-0.0002671	-0.287	-0.00013554	-0.85255	-0.00040263	472.26947658271416	21.747	0.31711	21.747	21.636	21.953	0					11	6	2	0	0	0	0.53424	1	7136	7136		56.721	1.9447	1	2552400			32584	5591	22614	22688	32988	32988					0.05111705503293251
REELLARG	8	Unmodified	_REELLARG_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000549462.1_1_12:53591166-53600997:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2695007324219	2	472.269616	942.524678	0.91102	0.00043025	-0.62001	-0.00029281	0.29101	0.00013744	472.26928080525806	21.507	0.12344	21.507	21.445	21.568	0					9	5	2	0	0	0	0.32815	1	5925	5925		79.451	2.6769	1	136590			32585	4338	22615	22689	32989	32989					0.05111705503293251
REENKQIAL	9	Unmodified	_REENKQIAL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8068237304688	2	550.806562	1099.59857	0.43034	0.00023703	0.030928	1.7035E-05	0.46126	0.00025407	550.8065210044791	22.619	0.25926	22.619	22.518	22.777	0					17	5	4	0	0	0	0.13726	1	7672	7672		70.816	5.3508	1	2301100			32586	7636	22616	22690	32990	32990					0.052756288749378655
REENKQIAL	9	Unmodified	_REENKQIAL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8067016601562	2	550.806562	1099.59857	0.65934	0.00036317	-0.1415	-7.7937E-05	0.51784	0.00028523	550.8064228072678	22.597	0.66078	22.597	22.489	23.15	0					28	13	5	0	0	0	0.047855	1	7548	7548		96.034	5.4327	1	5900200			32587	7636	22616	22690	32991	32991					0.052756288749378655
REENKVRAV	9	Unmodified	_REENKVRAV_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8123168945312	2	550.812179	1099.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.469	1	15.469	14.969	15.969	0								0	0	0	0.16453	1	4235	4235		56.434	22.261	1				32588	1941	22617	22691	32992	32992					0.06398450969095393
REESADFDIV	10	Unmodified	_REESADFDIV_					0	0	0			REV__LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant	REV__LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	591.2797241210938	2	590.777667	1179.54078	0.12392	7.3209E-05	2.9678	0.0017533	3.0917	0.0018265	590.7794760361497	36.817	0.16515	36.817	36.774	36.939	0					12	8	2	0	0	0	0.61187	1	12074	12074		32.812	1.2826	1	46264	+		32589	16273	22618	22692	32993	32993					-0.041806778411455525
REESGEPKVV	10	Unmodified	_REESGEPKVV_					0	0	0			REV__ENST00000466081.5_1_10:90751224-90770411:+|nuORF	REV__ENST00000466081.5_1_10:90751224-90770411:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.2960815429688	2	565.296027	1128.5775	1.4476	0.00081833	-0.56459	-0.00031916	0.88302	0.00049917	565.2958190758307	26.66	0.1716	26.66	26.557	26.729	0					8	5	2	0	0	0	0.65051	1	8149	8149		28.081	1.2854	1	164680	+		32590	18658	22619	22693	32994	32994					0.01835618775430703
REESKKVV	8	Unmodified	_REESKKVV_					0	0	0			REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.78466796875	2	487.785099	973.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.153	1	19.153	18.653	19.653	0								0	0	0	1.7419	1	5137	5137		33.516	1.5607	1		+		32591	16763	22620	22694	32995	32995					0.06780858817523949
REFAGKKAAE	10	Unmodified	_REFAGKKAAE_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8023681640625	2	553.80128	1105.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.309	1	26.309	25.809	26.809	0								0	0	0	0.328	1	8258	8258		46.457	2.0796	1		+		32592	12026	22621	22695	32996	32996					0.03943646220523078
REFGANDNM	9	Unmodified	_REFGANDNM_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2254028320312	2	527.224548	1052.43454	0.57775	0.0003046	-0.12473	-6.5758E-05	0.45303	0.00023885	527.2246019374854	25.222	0.29028	25.222	25.143	25.433	0					16	9	3	0	0	0	0.44949	1	7551	7551		37.508	10.461	1	366250			32593	5509	22622	22696	32997	32997					-0.08957711887455844
REFGANDNM	9	Unmodified	_REFGANDNM_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2247924804688	2	527.224548	1052.43454	0.10396	5.4811E-05	0.45596	0.00024039	0.55992	0.00029521	527.2248386925895	25.491	0.33994	25.491	25.404	25.744	0					20	8	3	0	0	0	0.11411	1	8705	8705		76.17	33.774	1	1614400			32594	5509	22622	22696	32998	32998					-0.08957711887455844
REFGANDNM	9	Unmodified	_REFGANDNM_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.224853515625	2	527.224548	1052.43454	1.7572	0.00092644	-1.4907	-0.00078594	0.2665	0.00014051	527.2239634956612	25.5	0.54193	25.5	25.392	25.934	0					28	9	5	0	0	0	0.046074	1	9047	9047		96.665	33.359	1	8944200			32595	5509	22622	22696	32999	32999					-0.08957711887455844
REFGANDNM	9	Unmodified	_REFGANDNM_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.22509765625	2	527.224548	1052.43454	1.2327	0.00064991	-0.88802	-0.00046819	0.34468	0.00018172	527.2242252999549	25.348	0.2359	25.348	25.252	25.488	0					15	5	4	0	0	0	0.090954	1	8037	8037		81.525	21.407	1	735770			32596	5509	22622	22696	33000	33000					-0.08957711887455844
REFGANDNM	9	Unmodified	_REFGANDNM_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2249145507812	2	527.224548	1052.43454	-1.202	-0.00063373	1.857	0.00097908	0.65503	0.00034535	527.2256120628696	25.335	0.29995	25.335	25.239	25.539	0					20	7	4	0	0	0	0.073657	1	8029	8029		86.882	22.674	1	1168400			32597	5509	22622	22696	33001	33001					-0.08957711887455844
REFGANDNMGA	11	Unmodified	_REFGANDNMGA_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	591.2533569335938	2	591.253837	1180.49312	0.12505	7.3936E-05	-0.15678	-9.2698E-05	-0.031732	-1.8761E-05	591.2537491079468	26.195	0.19851	26.195	26.13	26.328	0					12	6	3	0	0	0	0.52595	1	7922	7922		42.338	15.645	1	280340			32598	5509	22623	22697	33002	33002					-0.08990655312982199
REFGANDNMGA	11	Unmodified	_REFGANDNMGA_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.2540283203125	2	591.253837	1180.49312	0.24084	0.0001424	-0.14454	-8.5458E-05	0.096307	5.6942E-05	591.2540026579725	26.448	0.31423	26.448	26.314	26.628	0					23	7	5	0	0	0	0.30412	1	9110	9110		62.166	12.63	1	1698400			32599	5509	22623	22697	33003	33003					-0.08990655312982199
REFGANDNMGA	11	Unmodified	_REFGANDNMGA_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.2537231445312	2	591.253837	1180.49312	-0.51069	-0.00030195	5.76E-05	3.4056E-08	-0.51063	-0.00030191	591.2541411237163	26.213	0.21074	26.213	26.113	26.323	0					17	6	4	0	0	0	0.23231	1	8205	8205		70.412	28.985	1	483680			32600	5509	22623	22697	33004	33004					-0.08990655312982199
REFGANDNMGA	11	Unmodified	_REFGANDNMGA_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.25390625	2	591.253837	1180.49312	1.5068	0.00089092	-1.7653	-0.0010437	-0.25847	-0.00015282	591.2529626851588	26.469	0.31828	26.469	26.359	26.677	0					19	6	5	0	0	0	0.045275	1	9487	9487		107.45	11.421	1	3034200			32601	5509	22623	22697	33005	33005					-0.08990655312982199
REFGANDNMGA	11	Unmodified	_REFGANDNMGA_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	591.2537231445312	2	591.253837	1180.49312	-1.7797	-0.0010523	1.6354	0.00096693	-0.14431	-8.5321E-05	591.2550578095361	26.284	0.23394	26.284	26.192	26.426	0					16	5	4	0	0	0	0.38061	1	8432	8432		53.597	17.15	1	518470			32602	5509	22623	22697	33006	33006					-0.08990655312982199
REFLADPQAD	10	Unmodified	_REFLADPQAD_					0	0	0			REV__nc|ENSG00000180815|Q6ZN16-2|MAP3K15	REV__nc|ENSG00000180815|Q6ZN16-2|MAP3K15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.2783203125	2	581.280377	1160.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.636	1	19.636	19.136	20.136	0								0	0	0	0.27541	1	5353	5353		54.776	5.2403	1		+		32603	16821	22624	22698	33007	33007					-0.027649542586686948
REFVIMFTL	9	Unmodified	_REFVIMFTL_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1;HEPHL1|p.I389Nfs*11|1|0.12|ENSG00000181333|chr11:94070469-94070470|-/A|frameshift_variant	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.8804931640625	3	385.87921	1154.6158	3.2152	0.0012407	-0.013465	-5.196E-06	3.2017	0.0012355	385.8792725415635	24.14	0.56834	24.14	23.996	24.565	0					44	11	5	0	0	0	0.39215	1	8280	8280		41.427	0	1	1867800			32604	6848	22625	22699	33008	33008					0.04467833156400047
REGEGGLSL	9	Unmodified	_REGEGGLSL_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113242781-113243126:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2378234863281	2	459.237981	916.461409	-0.66344	-0.00030468	0.23063	0.00010591	-0.43281	-0.00019876	459.23816368720946	30.952	0.25868	30.952	30.822	31.08	0					11	6	3	0	0	0	0.056004	1	11224	11224		93.143	5.3889	1	752450			32605	5123	22626	22700	33009	33009					-0.0001628000460414114
REGGTHQQL	9	Unmodified	_REGGTHQQL_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2597045898438	2	513.259779	1024.50501	1.0957	0.0005624	-1.0456	-0.00053666	0.050154	2.5742E-05	513.2591272464796	15.621	0.098202	15.621	15.571	15.669	0					4	2	2	0	0	0	0.19952	1	4086	4086		61.691	17.16	1	342740			32606	6087	22627	22701	33010	33010					-0.0062667050747222675
REGNKGPAGDN	11	Unmodified	_REGNKGPAGDN_					0	0	0			REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.274169921875	2	557.765426	1113.5163	0.54319	0.00030297	-0.60179	-0.00033566	-0.058593	-3.2681E-05	557.7641050575498	27.643	0.34443	27.643	27.489	27.833	0					16	8	3	0	0	0	0.40021	1	9757	9757		51.528	5.5555	1	600040	+	+	32607	12560	22628	22702	33011	33011					-0.035918932039976426
REGQMAARL	9	Unmodified	_REGQMAARL_					0	0	0			REV__ENSG00000169918|ENST00000307050|OTUD7A	REV__ENSG00000169918|ENST00000307050|OTUD7A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.274169921875	2	516.274375	1030.5342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.167	1	53.167	52.667	53.667	0								0	0	0	0.3119	1	20526	20526		32.812	6.0163	1		+		32608	16343	22629	22703	33012	33012					0.020151505171497774
REHEKEVL	8	Unmodified	_REHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2807006835938	2	520.28018	1038.54581	1.4256	0.00074173	-1.5583	-0.00081077	-0.13268	-6.9032E-05	520.2792236811733	16.784	0.28607	16.784	16.705	16.991	0					11	7	2	0	0	0	0.27565	1	4631	4631		90.601	19.305	1	649970			32609	3051	22630	22704	33013	33013					0.028076708121261618
REHEKEVL	8	Unmodified	_REHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2804565429688	2	520.28018	1038.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.78	1	16.78	16.28	17.28	0								0	0	0	1.7419	1	4717	4717		39.253	2.0937	1				32610	3051	22630	22704	33014	33014					0.028076708121261618
REHIKVQQL	9	Unmodified	_REHIKVQQL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.837890625	2	575.838197	1149.66184	1.5853	0.00091288	-1.6602	-0.00095603	-0.074921	-4.3142E-05	575.837396036767	21.789	0.39317	21.789	21.696	22.089	0					14	9	3	0	0	0	0.040209	1	7011	7011		93.143	36.422	1	366420			32611	2871	22631	22705	33015	33015					0.09299614382848631
REHIKVQQL	9	Unmodified	_REHIKVQQL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.8385009765625	2	575.838197	1149.66184	1.6904	0.00097339	-1.4558	-0.0008383	0.23459	0.00013509	575.8374834631609	21.73	0.46546	21.73	21.522	21.988	0					13	9	3	0	0	0	0.0079272	1	7132	7132		129.42	12.518	1	530410			32612	2871	22631	22705	33016	33016					0.09299614382848631
REHLLSYL	8	Unmodified	_REHLLSYL_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.19415283203125	3	344.194186	1029.56073	0.52141	0.00017947	-0.59373	-0.00020436	-0.072323	-2.4893E-05	344.19397034089525	23.737	0.56659	23.737	23.529	24.096	0					22	11	3	0	0	0	0.79567	1	8207	8207		14.137	0	1	269570			32613	4268	22632	22706	33017	33017					0.04713162680127425
REHVEAIKI	9	Unmodified	_REHVEAIKI_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.54876708984375	3	365.548741	1093.62439	0.48217	0.00017626	-0.50349	-0.00018405	-0.021325	-7.7952E-06	365.5484911990605	24.286	0.61522	24.286	24.079	24.694	0					19	12	3	0	0	0	0.15558	1	8472	8472		66.962	29.15	1	430610			32614	3292	22633	22707	33018	33018					0.0813252311722863
REIAQDFKT	9	Unmodified	_REIAQDFKT_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2938232421875	2	554.293288	1106.57202	1.8204	0.001009	-1.5217	-0.00084349	0.29866	0.00016555	554.2925109435367	24.619	0.20999	24.619	24.513	24.723	0					10	4	3	0	0	0	0.082776	1	8528	8528		83.647	9.392	1	773810			32615	6067	22634	22708	33019	33019					0.0229993998361806
REIAQDFKTDL	11	Unmodified	_REIAQDFKTDL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.9013977050781	3	445.90162	1334.68303	-0.45011	-0.0002007	0.15064	6.7169E-05	-0.29947	-0.00013354	445.9016214641187	34.353	0.16589	34.353	34.294	34.46	0					8	3	3	0	0	0	0.60545	1	13173	13173		67.749	38.199	1	478630			32616	6067	22635	22709	33020	33020					0.02907534901055442
REIAQDFKTDL	11	Unmodified	_REIAQDFKTDL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.9013977050781	3	445.90162	1334.68303	0.8136	0.00036279	-1.0829	-0.00048287	-0.26931	-0.00012009	445.9010940141388	34.385	0.45561	34.385	34.229	34.684	0					20	9	4	0	0	0	0.36165	1	13161	13161		89.356	49.483	1	1192000			32617	6067	22635	22709	33021	33021					0.02907534901055442
REIEVEKM	8	Unmodified	_REIEVEKM_					0	0	0		ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18;ENST00000498439.1_1_16:846687-847972:+|nuORF	ENSG00000127586|ENST00000262315|CHTF18	ENSG00000127586|ENST00000262315|CHTF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.270751953125	2	517.270967	1032.52738	1.8317	0.00094747	-0.68726	-0.0003555	1.1444	0.00059197	517.2705686284064	24.333	0.10472	24.333	24.236	24.34	0					4	2	2	0	0	0	0.63854	1	8166	8166		42.864	3.6114	1	154360			32618	3514	22636	22710	33022	33022					0.012417928459399263
REIKKVNVS	9	Unmodified	_REIKKVNVS_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8271484375	2	536.827298	1071.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.515	1	15.515	15.015	16.015	0								0	0	0	0.31222	1	3555	3555		40.778	21.675	1				32619	9907	22637	22711	33023	33023					0.10708809634274985
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.3255004882812	2	543.324922	1084.63529	1.842	0.0010008	-1.2216	-0.00066371	0.62043	0.0003371	543.3243467783659	27.849	0.24555	27.849	27.753	27.998	0					16	8	3	0	0	0	0.18505	1	8619	8619		56.434	19.987	1	381250			32620	5257;7505	22638	22712	33024	33024					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.3255004882812	2	543.324922	1084.63529	0.33771	0.00018349	0.14741	8.0092E-05	0.48512	0.00026358	543.32524013423	27.857	0.29015	27.857	27.762	28.052	0					21	10	3	0	0	0	0.26699	1	8924	8924		46.457	16.139	1	329330			32621	5257;7505	22638	22712	33025	33025					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.3253784179688	2	543.324922	1084.63529	2.0142	0.0010944	-1.2238	-0.00066491	0.79047	0.00042948	543.3243487617675	28.088	0.39437	28.088	27.897	28.291	0					17	8	4	0	0	0	0.064446	1	10261	10261		93.598	34.816	1	2835300			32622	5257;7505	22638	22712	33026	33026					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.3261108398438	2	543.324922	1084.63529	2.0657	0.0011223	-0.53796	-0.00029229	1.5277	0.00083004	543.3247471812006	27.899	0.10169	27.899	27.838	27.94	0					4	2	2	0	0	0	0.090954	1	9191	9191		75.043	3.1658	1	83298			32623	5257;7505	22638	22712	33027	33027					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.3252563476562	2	543.324922	1084.63529	1.079	0.00058626	-0.58608	-0.00031843	0.49295	0.00026783	543.3247540666177	27.915	0.25462	27.915	27.828	28.082	0					12	6	3	0	0	0	0.19891	1	9182	9182		54.722	0	1	373320			32624	5257;7505	22638	22712	33028	33028					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3251342773438	2	543.324922	1084.63529	0.60857	0.00033065	-0.18876	-0.00010256	0.41981	0.00022809	543.324871257473	28.018	0.41722	28.018	27.91	28.327	0					19	8	5	0	0	0	0.034688	1	10110	10110		98.582	26.705	1	2195400			32625	5257;7505	22638	22712	33029	33029					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3250732421875	2	543.324922	1084.63529	2.0057	0.0010898	-1.6222	-0.00088136	0.38359	0.00020841	543.3241039153087	28.051	0.3654	28.051	27.846	28.211	0					18	7	5	0	0	0	0.085309	1	10103	10103		66.962	12.186	1	3348000			32626	5257;7505	22638	22712	33030	33030					0.09635925491488706
REISDTLTM	9	Unmodified	_REISDTLTM_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2662963867188	2	533.265881	1064.51721	0.71545	0.00038153	-0.35614	-0.00018992	0.35931	0.00019161	533.2657525101328	24.779	0.16101	24.779	24.723	24.884	0					7	3	3	0	0	0	0.35021	1	8606	8606		45.972	0	1	293660	+		32627	12858	22639	22713	33031	33031					-0.012468148793232103
REISLLKELR	10	Unmodified	_REISLLKELR_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.59429931640625	3	419.59435	1255.76122	0.45104	0.00018925	-0.45096	-0.00018922	7.8381E-05	3.2888E-08	419.5941773617025	31.936	0.51398	31.936	31.818	32.332	0					47	21	4	0	0	0	0.52848	1	10264	10264		42.243	3.5285	1	292770			32628	6226	22640	22714	33032	33032					0.1435701227694608
REKANGTTV	9	Unmodified	_REKANGTTV_					0	0	0		ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000584906.5_1_17:8280884-8283916:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2641906738281	2	488.26453	974.514508	0.62035	0.0003029	-1.2752	-0.00062265	-0.65488	-0.00031975	488.2639175249882	13.88	0.16644	13.88	13.824	13.991	0					8	3	3	0	0	0	0.020674	1	3489	3489		120.87	38.563	1	2530300			32629	1176	22641	22715	33033	33033					0.02623097778052852
REKANGTTV	9	Unmodified	_REKANGTTV_					0	0	0		ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000584906.5_1_17:8280884-8283916:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2642517089844	2	488.26453	974.514508	0.79585	0.00038858	-1.4161	-0.00069142	-0.62023	-0.00030284	488.2638689694558	13.855	0.16509	13.855	13.749	13.914	0					6	3	2	0	0	0	0.21263	1	3325	3325		60.118	15.587	1	1459200			32630	1176	22641	22715	33034	33034					0.02623097778052852
REKDTVKKL	9	Unmodified	_REKDTVKKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.8961486816406	3	372.896029	1115.66626	0.49804	0.00018572	-0.51566	-0.00019229	-0.017615	-6.5687E-06	372.8958409768268	14.544	0.13189	14.544	14.483	14.615	0					11	5	3	0	0	0	0.2546	1	3012	3012		79.07	34.048	1	99176			32631	3441	22642	22716	33035	33035					0.1130507880575351
REKDTVKKL	9	Unmodified	_REKDTVKKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.8405151367188	2	558.840405	1115.66626	0.52377	0.0002927	-0.27415	-0.00015321	0.24962	0.0001395	558.8402420577813	14.815	0.34756	14.815	14.721	15.068	0					15	8	3	0	0	0	0.029571	1	3701	3701		109.44	16.296	1	3752100			32632	3441	22642	22716	33036	33036					0.1130507880575351
REKDTVKKL	9	Unmodified	_REKDTVKKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.8412475585938	2	558.840405	1115.66626	-0.46745	-0.00026123	1.5734	0.00087929	1.106	0.00061806	558.8413045036169	14.507	0.1487	14.507	14.456	14.604	0					10	6	2	0	0	0	0.22837	1	3147	3147		58.23	5.2932	1	168350			32633	3441	22642	22716	33037	33037					0.1130507880575351
REKDTVKKL	9	Unmodified	_REKDTVKKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.8407592773438	2	558.840405	1115.66626	-0.12607	-7.045E-05	0.73743	0.0004121	0.61136	0.00034165	558.8408829045356	14.772	0.21457	14.772	14.663	14.878	0					10	4	3	0	0	0	0.25761	1	3914	3914		54.722	4.6978	1	1958000			32634	3441	22642	22716	33038	33038					0.1130507880575351
REKDTVKKL	9	Unmodified	_REKDTVKKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.8958740234375	3	372.896029	1115.66626	-0.31383	-0.00011703	-0.008647	-3.2244E-06	-0.32248	-0.00012025	372.8960179605566	14.72	0.26773	14.72	14.66	14.928	0					8	5	3	0	0	0	0.090954	1	3735	3735		97.597	21.945	1	1581800			32635	3441	22642	22716	33039	33039					0.1130507880575351
REKDTVKKL	9	Unmodified	_REKDTVKKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.8959655761719	3	372.896029	1115.66626	0.76151	0.00028396	-0.89477	-0.00033366	-0.13326	-4.9693E-05	372.8956790924046	14.703	0.47012	14.703	14.643	15.113	0					17	9	3	0	0	0	0.032383	1	3729	3729		122.94	0	1	1341300			32636	3441	22642	22716	33040	33040					0.1130507880575351
REKEEQKKL	9	Unmodified	_REKEEQKKL_					0	0	0		ENSG00000198730|ENST00000361367|CTR9;ENST00000529898.1_1_11:10794082-10795717:+|nuORF	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.34130859375	2	594.340769	1186.66699	1.4864	0.00088345	-0.75944	-0.00045137	0.727	0.00043208	594.3404104114351	13.016	0.096509	13.016	12.971	13.067	0					4	2	2	0	0	0	0.21222	1	3084	3084		53.089	8.0668	1	244150			32637	7597	22643	22717	33041	33041					0.08111873454822671
REKEGDKPSA	10	Unmodified	_REKEGDKPSA_					0	0	0		ENST00000592787.2_1_19:2269573-2271441:+|nuORF;ENSG00000104904|ENST00000602676|OAZ1	ENST00000592787.2_1_19:2269573-2271441:+|nuORF	ENST00000592787.2_1_19:2269573-2271441:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7858276367188	2	558.785827	1115.5571	1.8258	0.0010202	-0.83202	-0.00046492	0.99374	0.00055529	558.7853962579849	12.14	0.23077	12.14	12.049	12.279	0					12	6	3	0	0	0	0.35046	1	2510	2510		61.691	5.2575	1	181280			32638	2321	22644	22718	33042	33042					0.003944481156167967
REKEIKSEL	9	Unmodified	_REKEIKSEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3225708007812	2	566.322045	1130.62954	1.4508	0.00082161	-0.37739	-0.00021373	1.0734	0.00060789	566.3220203287804	18.725	0.11119	18.725	18.654	18.766	0					5	3	2	0	0	0	0.15558	1	4705	4705		66.962	12.24	1	70479			32639	8001	22645	22719	33043	33043					0.06944782189179932
REKEIKSEL	9	Unmodified	_REKEIKSEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3224487304688	2	566.322045	1130.62954	1.7691	0.0010019	-0.58816	-0.00033309	1.1809	0.00066879	566.3219996673995	19.006	0.68736	19.006	18.896	19.584	0					22	16	3	0	0	0	0.034688	1	5672	5672		104.42	20.777	1	1098400			32640	8001	22645	22719	33044	33044					0.06944782189179932
REKEIKSEL	9	Unmodified	_REKEIKSEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.3225708007812	2	566.322045	1130.62954	1.9213	0.0010881	-0.51372	-0.00029093	1.4075	0.00079712	566.3218488122093	18.925	0.85738	18.925	18.818	19.676	0					16	10	2	0	0	0	0.034688	1	5907	5907		104.42	21.673	1	1026600			32641	8001	22645	22719	33045	33045					0.06944782189179932
REKEKEKEL	9	Unmodified	_REKEKEKEL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;DHX15|p.T231Pfs*6|1|0.27|ENSG00000109606|chr4:24570664-24570664|T/-|frameshift_variant	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.8329467773438	2	594.832777	1187.651	1.4341	0.00085302	-1.0075	-0.0005993	0.42654	0.00025372	594.8320161127108	13.424	0.27688	13.424	13.376	13.653	0					14	6	4	0	0	0	0.067603	1	3274	3274		89.029	5.3818	1	581520			32642	2580	22646	22720	33046	33046					0.06468167217894916
REKEKEKEL	9	Unmodified	_REKEKEKEL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;DHX15|p.T231Pfs*6|1|0.27|ENSG00000109606|chr4:24570664-24570664|T/-|frameshift_variant	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8329467773438	2	594.832777	1187.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.434	1	13.434	12.934	13.934	0								0	0	0	0.0016356	1	3116	3116		123.21	21.955	1				32643	2580	22646	22720	33047	33047					0.06468167217894916
REKEKTAL	8	Unmodified	_REKEKTAL_					0	0	0		ENST00000494624.1_1_X:100872426-100872564:-|nuORF;ENST00000361910.8_1_X:100871678-100872564:-|nuORF;ENST00000539247.5_1_X:100872276-100872564:-|nuORF	ENST00000494624.1_1_X:100872426-100872564:-|nuORF	ENST00000494624.1_1_X:100872426-100872564:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7845458984375	2	487.785099	973.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.237	1	19.237	18.737	19.737	0								0	0	0	1.7419	1	5184	5184		29.15	16.19	1				32644	8884	22647	22721	33048	33048					0.06780858817501212
REKELAKVTI	10	Unmodified	_REKELAKVTI_					0	0	0		ENST00000498605.1_1_15:44093641-44093782:+|nuORF;ENST00000458412.1_2_15:44092902-44093782:+|nuORF;ENSG00000242028|ENST00000442995|HYPK	ENST00000498605.1_1_15:44093641-44093782:+|nuORF	ENST00000498605.1_1_15:44093641-44093782:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	396.24346923828125	3	396.243317	1185.70812	-1.282	-0.00050799	1.3913	0.0005513	0.10931	4.3311E-05	396.2438005993763	24.122	0.36348	24.122	24.018	24.382	0					20	11	2	0	0	0	0.50639	1	7346	7346		44.639	8.1927	1	312240			32645	7943	22648	22722	33049	33049					0.122696344942824
REKELESIK	9	Unmodified	_REKELESIK_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.88360595703125	3	377.883789	1130.62954	0.81143	0.00030663	-1.1116	-0.00042006	-0.30019	-0.00011344	377.8833513393233	19.006	0.3975	19.006	18.924	19.322	0					20	9	4	0	0	0	0.18416	1	5668	5668		70.399	0	1	2319600			32646	5422	22649	22723	33050	33050					0.06944782189157195
REKELESIK	9	Unmodified	_REKELESIK_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.8836364746094	3	377.883789	1130.62954	0.23449	8.8609E-05	-0.50052	-0.00018914	-0.26603	-0.00010053	377.8835425878908	18.942	0.16735	18.942	18.883	19.05	0					5	3	2	0	0	0	0.30841	1	5912	5912		48.602	0	1	228140			32647	5422	22649	22723	33051	33051					0.06944782189157195
REKELESIK	9	Unmodified	_REKELESIK_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.8839416503906	3	377.883789	1130.62954	-0.43204	-0.00016326	0.79364	0.00029991	0.3616	0.00013664	377.8840699541529	18.906	0.2654	18.906	18.846	19.112	0					12	5	3	0	0	0	0.17062	1	5759	5759		72.096	0	1	1190000			32648	5422	22649	22723	33052	33052					0.06944782189157195
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.2311096191406	3	392.231189	1173.67174	0.56921	0.00022326	-1.0721	-0.00042053	-0.50293	-0.00019727	392.23081566951686	20.954	0.30441	20.954	20.879	21.183	0					13	8	2	0	0	0	0.52275	1	5688	5688		55.084	17.576	1	296010			32649	2007;3852;3829	22650	22724	33053	33053					0.09184757597586213
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.843017578125	2	587.843145	1173.67174	0.13665	8.0326E-05	0.25103	0.00014757	0.38768	0.00022789	587.8432893177716	21.255	0.26922	21.255	21.163	21.433	0					15	6	3	0	0	0	0.13663	1	6741	6741		89.029	29.098	1	699660			32650	2007;3852;3829	22650	22724	33054	33054					0.09184757597586213
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.8433227539062	2	587.843145	1173.67174	-0.38322	-0.00022527	0.60903	0.00035801	0.22581	0.00013274	587.8433657975374	20.985	0.24004	20.985	20.891	21.131	0					15	7	3	0	0	0	0.14893	1	5939	5939		86.882	33.793	1	291750			32651	2007;3852;3829	22650	22724	33055	33055					0.09184757597586213
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.2311096191406	3	392.231189	1173.67174	-0.15826	-6.2076E-05	-0.48676	-0.00019092	-0.64503	-0.000253	392.2311436181533	21.025	0.28215	21.025	20.979	21.261	0					13	6	4	0	0	0	0.54861	1	6031	6031		52.167	2.1337	1	307080			32652	2007;3852;3829	22650	22724	33056	33056					0.09184757597586213
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.8430786132812	2	587.843145	1173.67174	0.53582	0.00031498	-0.27734	-0.00016303	0.25848	0.00015195	587.8429600019238	21.07	0.2355	21.07	20.979	21.215	0					13	5	3	0	0	0	0.048505	1	6035	6035		109.83	34.786	1	230990			32653	2007;3852;3829	22650	22724	33057	33057					0.09184757597586213
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.2310791015625	3	392.231189	1173.67174	-0.67298	-0.00026397	0.42654	0.0001673	-0.24644	-9.6663E-05	392.23136517328237	21.15	0.36154	21.15	21.042	21.404	0					20	7	4	0	0	0	0.22691	1	6847	6847		88.134	44.715	1	2387600			32654	2007;3852;3829	22650	22724	33058	33058					0.09184757597586213
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.23114013671875	3	392.231189	1173.67174	0.45896	0.00018002	-0.78787	-0.00030903	-0.32891	-0.00012901	392.23092175079506	21.182	0.4121	21.182	21.025	21.437	0					21	8	4	0	0	0	0.23612	1	6865	6865		96.665	61.487	1	4033800			32655	2007;3852;3829	22650	22724	33059	33059					0.09184757597586213
REKGITKAVK	10	Unmodified	_REKGITKAVK_					0	0	0		tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	565.3560791015625	2	565.356222	1128.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.063	1	31.063	30.563	31.563	0								0	0	0	0.38475	1	10261	10261		35.152	4.8343	1				32656	22561	22651	22725	33060	33060					0.13869071559702206
REKGKISNK	9	Unmodified	_REKGKISNK_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.8186645507812	2	530.317097	1058.61964	1.2023	0.00063761	-0.046567	-2.4695E-05	1.1557	0.00061291	530.8185782245449	14.724	0.096159	14.724	14.685	14.781	0					5	3	2	0	0	0	0.48623	1	3185	3185		33.922	1.1092	1	62258			32657	3937	22652	22726	33061	33061					0.09267638974461079
REKIETEL	8	Unmodified	_REKIETEL_					0	0	0		ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	ENST00000480304.5_1_8:101936173-101961117:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.282470703125	2	509.282389	1016.55022	0.60563	0.00030844	0.24979	0.00012721	0.85542	0.00043565	509.28237285904214	24.243	0.23384	24.243	24.138	24.372	0					7	5	2	0	0	0	0.58686	1	7538	7538		51.193	6.8155	1	71729			32658	5741	22653	22727	33062	33062					0.04261135235049096
REKISLKR	8	Unmodified	_REKISLKR_					0	0	0		ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENST00000491021.1_1_22:42993722-42998991:-|nuORF	ENSG00000100227|ENST00000252115|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3302001953125	2	515.330008	1028.64546	0.02853	1.4702E-05	0.053853	2.7752E-05	0.082383	4.2454E-05	515.3300415810093	17.983	0.37087	17.983	17.883	18.254	0					14	8	2	0	0	0	0.60692	1	5163	5163		37.812	0	1	4330600			32659	1986	22654	22728	33063	33063					0.13228533216761207
REKITAQSI	9	Unmodified	_REKITAQSI_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3038330078125	2	523.303655	1044.59276	1.7915	0.00093751	-2.0573	-0.0010766	-0.26578	-0.00013908	523.3029719695952	22.474	0.31006	22.474	22.4	22.711	0					22	6	5	0	0	0	0.11411	1	7618	7618		76.17	0	1	1057600			32660	8001	22655	22729	33064	33064					0.07224530363282611
REKIVEVM	8	Unmodified	_REKIVEVM_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2838439941406	2	502.283877	1002.5532	0.71373	0.00035849	-3.9452	-0.0019816	-3.2314	-0.0016231	502.2830389288647	26.974	0.33484	26.974	26.805	27.14	0					22	8	4	0	0	0	0.53424	1	9365	9365		56.721	3.7844	1	362060			32661	4222	22656	22730	33065	33065					0.05202687088217317
REKIVEVMF	9	Unmodified	_REKIVEVMF_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.81787109375	2	575.818084	1149.62162	0.15064	8.6741E-05	-0.081821	-4.7114E-05	0.068819	3.9627E-05	575.8182692428999	38.192	0.7237	38.192	38.039	38.763	0					36	15	4	0	0	0	0.46194	2	14960	14960;15133		36.447	9.6506	1	634070			32662	4222	22657	22731	33066;33067	33066					0.05278931668067344
REKIVEVMF	9	Unmodified	_REKIVEVMF_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.8182373046875	2	575.818084	1149.62162	1.6917	0.00097414	-1.6017	-0.00092229	0.090035	5.1844E-05	575.817328522387	38.162	0.67381	38.162	38.072	38.746	0					39	14	4	0	0	0	0.34452	1	14991	14991		46.457	0.48454	1	1025000			32663	4222	22657	22731	33068	33068					0.05278931668067344
REKKEESEL	9	Unmodified	_REKKEESEL_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.3012084960938	2	574.30131	1146.58807	1.4759	0.0008476	-0.088544	-5.0851E-05	1.3873	0.00079675	574.3011562091189	14.865	0.13089	14.865	14.803	14.934	0					13	6	3	0	0	0	0.15558	1	3127	3127		66.962	4.8545	1	163360			32664	1399	22658	22732	33069	33069					0.020636014298588634
REKKEESEL	9	Unmodified	_REKKEESEL_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.8041381835938	2	574.30131	1146.58807	0.60633	0.00034821	0.50027	0.00028731	1.1066	0.00063552	574.301610712996	14.978	0.15998	14.978	14.894	15.054	0					15	7	3	0	0	0	0.070005	1	3256	3256		88.177	13.134	1	172880			32665	1399	22658	22732	33070	33070					0.020636014298588634
REKKEESEL	9	Unmodified	_REKKEESEL_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.3016967773438	2	574.30131	1146.58807	0.1573	9.0339E-05	0.5115	0.00029376	0.6688	0.00038409	574.3015495395155	15.07	0.50062	15.07	15.012	15.513	0					18	10	3	0	0	0	0.0063888	1	3903	3903		152.06	19.303	1	961750			32666	1399	22658	22732	33071	33071					0.020636014298588634
REKKEESEL	9	Unmodified	_REKKEESEL_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.3013305664062	2	574.30131	1146.58807	1.6699	0.00095903	-1.2638	-0.00072582	0.40608	0.00023321	574.3004943893137	15.104	0.65249	15.104	14.995	15.647	0					21	13	2	0	0	0	0.022698	1	3919	3919		117.53	18.944	1	3111900			32667	1399	22658	22732	33072	33072					0.020636014298588634
REKKTENSKL	10	Unmodified	_REKKTENSKL_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.8517456054688	2	616.851501	1231.68845	1.0674	0.00065845	-0.73009	-0.00045036	0.33735	0.00020809	616.8512672296597	12.846	0.14106	12.846	12.801	12.942	0					5	3	2	0	0	0	0.11826	1	3005	3005		92.239	28.812	1	152560			32668	2401	22659	22733	33073	33073					0.08187258483530968
REKKTENSKL	10	Unmodified	_REKKTENSKL_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	616.8518676757812	2	616.851501	1231.68845	3.0381	0.001874	-2.9047	-0.0017917	0.13342	8.2302E-05	616.8497962732722	12.815	0.1136	12.815	12.756	12.87	0					4	2	2	0	0	0	0.536	1	2834	2834		41.427	2.1738	1	329650			32669	2401	22659	22733	33074	33074					0.08187258483530968
REKLELTE	8	Unmodified	_REKLELTE_					0	0	0			REV__ENSG00000160994|ENST00000292574|CCDC105	REV__ENSG00000160994|ENST00000292574|CCDC105	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2828369140625	2	509.282389	1016.55022	0.22118	0.00011265	-0.095843	-4.8811E-05	0.12534	6.3834E-05	509.28245463164234	24.419	0.2666	24.419	24.31	24.577	0					11	5	3	0	0	0	0.57171	1	8534	8534		52.937	1.6012	1	557690	+		32670	15772	22660	22734	33075	33075					0.042611352350377274
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	588.30908203125	2	588.308081	1174.60161	1.5184	0.00089331	-1.2142	-0.00071431	0.30428	0.00017901	588.307581837819	28.276	0.28512	28.276	28.188	28.473	0					21	9	3	0	0	0	0.30257	1	8799	8799		42.864	21.917	1	499370			32671	1132	22661	22735	33076	33076					0.021291359374572494
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.3079833984375	2	588.308081	1174.60161	1.0604	0.00062385	-1.1563	-0.00068024	-0.095846	-5.6387E-05	588.3075554366529	28.529	0.45512	28.529	28.447	28.902	0					33	11	4	0	0	0	0.0040239	1	10084	10084		159.28	5.1575	1	3395000			32672	1132	22661	22735	33077	33077					0.021291359374572494
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	588.3082885742188	2	588.308081	1174.60161	-0.40292	-0.00023704	1.4082	0.00082843	1.0052	0.00059139	588.3090372954945	28.335	0.37104	28.335	28.234	28.605	0					36	13	4	0	0	0	0.10506	1	9103	9103		62.107	5.3864	1	585850			32673	1132	22661	22735	33078	33078					0.021291359374572494
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.3087158203125	2	588.308081	1174.60161	1.4557	0.00085641	-0.51851	-0.00030504	0.9372	0.00055136	588.3078212786181	28.571	0.96941	28.571	28.365	29.334	0					40	20	4	0	0	0	0.0046931	1	10471	10471		143.37	30.963	1	3132700			32674	1132	22661	22735	33079	33079					0.021291359374572494
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.80908203125	2	588.308081	1174.60161	-1.7552	-0.0010326	2.1993	0.0012939	0.44409	0.00026126	588.309704741149	28.365	0.20658	28.365	28.27	28.477	0					15	5	4	0	0	0	0.26699	1	9391	9391		46.457	5.6786	1	375300			32675	1132	22661	22735	33080	33080					0.021291359374572494
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.30810546875	2	588.308081	1174.60161	1.3789	0.0008112	-1.1617	-0.00068345	0.21716	0.00012776	588.3075208570959	28.503	0.71524	28.503	28.294	29.009	0					41	14	4	0	0	0	0.019316	1	10318	10318		106.88	0.19718	1	5901300			32676	1132	22661	22735	33081	33081					0.021291359374572494
REKMTQIMF	9	Unmodified	_REKMTQIMF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.302490234375	2	592.301744	1182.58893	-0.538	-0.00031866	0.4993	0.00029574	-0.038692	-2.2917E-05	592.302065419786	34.674	0.45105	34.674	34.544	34.996	0					40	20	3	0	0	0	0.48623	1	11674	11674		33.922	10.399	1	157620			32677	1545;6995;2493;7397;7857;9697	22662	22736	33082	33082					0.004944012735677461
REKMTQIMF	9	Unmodified	_REKMTQIMF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.3018798828125	2	592.301744	1182.58893	1.4382	0.00085186	-1.8214	-0.0010788	-0.38321	-0.00022697	592.3008913202361	34.726	1.1165	34.726	34.62	35.737	0					67	22	5	0	0	0	0.14578	1	13327	13327		68.846	14.124	1	4907300			32678	1545;6995;2493;7397;7857;9697	22662	22736	33083	33083					0.004944012735677461
REKRKKDP	8	Unmodified	_REKRKKDP_					0	0	0			REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	REV__HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.8175659179688	2	528.817264	1055.61998	1.6291	0.00086148	-0.97873	-0.00051757	0.65034	0.00034391	528.8167130886164	17.235	0.16929	17.235	17.124	17.293	0					5	3	2	0	0	0	0.53424	1	4947	4947		56.721	7.2795	1	582510	+		32679	14450	22663	22737	33084	33084					0.09439058694306368
REKRKQLTL	9	Unmodified	_REKRKQLTL_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF	nc|ENSG00000135111|O15119-3|TBX3;ENST00000477081.1_1_17:59477759-59482423:+|nuORF	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.2472839355469	3	391.247173	1170.71969	-0.68182	-0.00026676	0.21673	8.4797E-05	-0.46509	-0.00018196	391.24735215653016	17.868	0.80402	17.868	17.734	18.538	0					30	16	3	0	0	0	0.41113	1	5261	5261		40.778	0.71999	1	221130			32680	3968;9916	22664	22738	33085	33085					0.1411587630827853
REKRTTVVA	9	Unmodified	_REKRTTVVA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.3174438476562	2	530.317097	1058.61964	1.73	0.00091746	-0.92361	-0.0004898	0.80642	0.00042766	530.3165920145165	14.985	0.31794	14.985	14.878	15.196	0					10	6	3	0	0	0	0.42902	1	4016	4016		39.253	2.8061	1	633740			32681	2284	22665	22739	33086	33086					0.09267638974483816
REKRTTVVA	9	Unmodified	_REKRTTVVA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3173217773438	2	530.317097	1058.61964	1.6426	0.00087109	-0.82557	-0.00043781	0.81702	0.00043328	530.316546888478	14.902	0.26938	14.902	14.844	15.113	0					9	5	3	0	0	0	0.14578	1	3825	3825		68.846	10.616	1	568900			32682	2284	22665	22739	33087	33087					0.09267638974483816
RELAARQGSL	10	Unmodified	_RELAARQGSL_					0	0	0			REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.81201171875	2	550.812179	1099.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.513	1	20.513	20.013	21.013	0								0	0	0	0.3805	1	5782	5782		36.447	2.5251	1		+		32683	15711	22666	22740	33088	33088					0.06398450969095393
RELAQQVQQV	10	Unmodified	_RELAQQVQQV_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	599.8304443359375	2	599.830569	1197.64658	0.14002	8.3987E-05	-0.66036	-0.00039611	-0.52035	-0.00031212	599.8303107533008	27.58	0.11918	27.58	27.523	27.642	0					7	4	2	0	0	0	0.36647	1	8520	8520		59.931	13.474	1	99735			32684	763;1982	22667	22741	33089	33089					0.055667027949766634
RELAQQVQQV	10	Unmodified	_RELAQQVQQV_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.8306884765625	2	599.830569	1197.64658	-0.12179	-7.3056E-05	0.22569	0.00013538	0.1039	6.2321E-05	599.830804580731	27.83	0.35481	27.83	27.61	27.965	0					13	8	3	0	0	0	0.11048	1	9777	9777		93.598	2.9967	1	557350			32685	763;1982	22667	22741	33090	33090					0.055667027949766634
RELAQQVQQV	10	Unmodified	_RELAQQVQQV_					0	0	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	599.8305053710938	2	599.830569	1197.64658	-1.8614	-0.0011165	2.5382	0.0015225	0.67682	0.00040598	599.8321157961701	27.682	0.097078	27.682	27.604	27.701	0					4	2	2	0	0	0	0.11048	1	9084	9084		93.598	28.132	1	79462			32686	763;1982	22667	22741	33091	33091					0.055667027949766634
RELDATATVL	10	Unmodified	_RELDATATVL_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;ENST00000497815.5_1_7:101459310-101755188:+|nuORF;CUX1|p.A591Qfs*9|1|0.06|ENSG00000257923|chr7:102197181-102197182|-/CAGT|frameshift_variant;ENST00000607092.1_1_7:101459310-101559544:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8013916015625	2	544.800946	1087.58734	0.38066	0.00020738	-0.019334	-1.0533E-05	0.36133	0.00019685	544.8008941943682	35.754	0.27735	35.754	35.664	35.942	0					15	7	3	0	0	0	0.46989	1	13439	13439		36.447	0	1	272570			32687	720;10693	22668	22742	33092	33092					0.04704806780796389
RELDGRTL	8	Unmodified	_RELDGRTL_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.266845703125	2	480.267073	958.519593	0.49661	0.0002385	-0.86784	-0.00041679	-0.37123	-0.00017829	480.2666106107341	23.01	0.21934	23.01	22.887	23.107	0					10	5	2	0	0	0	0.32597	1	7550	7550		79.713	2.395	1	1154100			32688	2714	22669	22743	33093	33093					0.0386740164068442
RELDGRTL	8	Unmodified	_RELDGRTL_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.267333984375	2	480.267073	958.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.723	1	22.723	22.223	23.223	0								0	0	0	1.7419	1	6732	6732		49.442	10.189	1				32689	2714	22669	22743	33094	33094					0.0386740164068442
RELDGRTL	8	Unmodified	_RELDGRTL_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2668762207031	2	480.267073	958.519593	-0.11072	-5.3173E-05	-0.45542	-0.00021872	-0.56613	-0.0002719	480.2668902835346	22.87	0.26843	22.87	22.76	23.028	0					10	5	3	0	0	0	0.58686	1	7811	7811		51.193	5.2204	1	758250			32690	2714	22669	22743	33095	33095					0.0386740164068442
RELDGRTL	8	Unmodified	_RELDGRTL_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2666320800781	2	480.267073	958.519593	-0.64535	-0.00030994	-0.055012	-2.6421E-05	-0.70037	-0.00033636	480.2670676646848	22.897	0.26422	22.897	22.789	23.053	0					12	5	3	0	0	0	0.36488	1	7675	7675		75.043	12.936	1	1894200			32691	2714	22669	22743	33096	33096					0.0386740164068442
RELDGRTL	8	Unmodified	_RELDGRTL_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2668762207031	2	480.267073	958.519593	0.93257	0.00044788	-1.4366	-0.00068993	-0.50398	-0.00024205	480.266379833081	22.88	0.16853	22.88	22.822	22.99	0					5	3	2	0	0	0	0.63854	1	7691	7691		42.864	0.46813	1	373180			32692	2714	22669	22743	33097	33097					0.0386740164068442
RELDRERQKL	10	Unmodified	_RELDRERQKL_					0	0	0		ENSG00000130724|ENST00000312547|CHMP2A;ENST00000600804.1_1_19:59065240-59065579:-|nuORF;ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENSG00000130724|ENST00000312547|CHMP2A	ENSG00000130724|ENST00000312547|CHMP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.2560729980469	3	448.256508	1341.7477	0.089608	4.0167E-05	-0.56297	-0.00025235	-0.47336	-0.00021219	448.2562593268788	18.539	0.22585	18.539	18.445	18.671	0					7	5	2	0	0	0	0.46989	1	5434	5434		48.602	2.1448	1	76917			32693	3663	22670	22744	33098	33098					0.09049154497711243
RELIQTSAL	9	Unmodified	_RELIQTSAL_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7982788085938	2	515.798206	1029.58186	0.032041	1.6527E-05	-3.7617	-0.0019403	-3.7296	-0.0019237	515.7961062975688	35.411	0.38888	35.411	35.142	35.531	0					17	10	2	0	0	0	0.10915	1	13267	13267		77.318	15.21	1	185120			32694	1924	22671	22745	33099	33099					0.06825127988986424
RELIQTSAL	9	Unmodified	_RELIQTSAL_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7982788085938	2	515.798206	1029.58186	-0.50651	-0.00026126	1.205	0.00062154	0.69849	0.00036028	515.7986217359113	35.378	0.18647	35.378	35.304	35.49	0					9	5	2	0	0	0	0.27249	1	13713	13713		52.937	6.9645	1	112620			32695	1924	22671	22745	33100	33100					0.06825127988986424
RELKEQMEL	9	Unmodified	_RELKEQMEL_					0	0	0			REV__ENSG00000099308|ENST00000687212|MAST3	REV__ENSG00000099308|ENST00000687212|MAST3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.3092041015625	2	588.308081	1174.60161	0.53314	0.00031365	0.42171	0.0002481	0.95485	0.00056174	588.3083590943652	28.366	0.33044	28.366	28.24	28.571	0					17	8	3	0	0	0	0.034688	1	9399	9399		109.48	13.445	1	545340	+		32696	13491	22672	22746	33101	33101					0.021291359374572494
RELLKHTK	8	Unmodified	_RELLKHTK_					0	0	0		tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.8151245117188	2	512.816733	1023.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.659	1	11.659	11.159	12.159	0								0	0	0	1.7419	1	2196	2196		24.203	0	1				32697	23020	22673	22747	33102	33102					0.10804844325423346
RELLWGKGG	9	Unmodified	_RELLWGKGG_					0	0	0		chr11:430403-430860|103|12.48|0.37|5.06|-|0|ANO9,None|1	chr11:430403-430860|103|12.48|0.37|5.06|-|0|ANO9,None|1	chr11:430403-430860|103|12.48|0.37|5.06|-|0|ANO9,None|1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2875671386719	2	508.287808	1014.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.444	1	37.444	36.944	37.944	0								0	0	0	0.31838	1	14646	14646		31.53	1.0262	1				32698	515	22674	22748	33103	33103					0.05436582400000134
RELPDTLGPQ	10	Unmodified	_RELPDTLGPQ_					0	0	0		ENST00000338502.8_2_19:38887395-38887539:+|nuORF	ENST00000338502.8_2_19:38887395-38887539:+|nuORF	ENST00000338502.8_2_19:38887395-38887539:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.2987670898438	2	563.29857	1124.58259	0.43706	0.00024619	0.46405	0.0002614	0.90111	0.00050759	563.2987387277893	14.531	0.24878	14.531	14.445	14.693	0					11	6	2	0	0	0	0.21754	1	3567	3567		77.318	7.69	1	1239200			32699	8716	22675	22749	33104	33104					0.02527922638023483
RELQGQALSP	10	Unmodified	_RELQGQALSP_					0	0	0		ENST00000319080.7_12:122627539-122627764:+|nuORF	ENST00000319080.7_12:122627539-122627764:+|nuORF	ENST00000319080.7_12:122627539-122627764:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7990112304688	2	549.798737	1097.58292	0.2207	0.00012134	0.32561	0.00017902	0.54631	0.00030036	549.7987059704523	30.766	0.19027	30.766	30.664	30.854	0					7	4	2	0	0	0	0.41335	1	11540	11540		54.776	0	1	159970			32700	8605	22676	22750	33105	33105					0.03803342357900874
RELQRASIL	9	Unmodified	_RELQRASIL_					0	0	0		nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1;ENST00000585990.5_1_17:73910371-73916335:-|nuORF;ENST00000593156.1_1_17:73913837-73918141:-|nuORF	nc|ENSG00000188878|Q8TES7-2|FBF1	nc|ENSG00000188878|Q8TES7-2|FBF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.3251953125	2	543.324922	1084.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.057	1	30.057	29.557	30.557	0								0	0	0	0.34598	1	9540	9540		19.104	3.4617	1				32701	7281	22677	22751	33106	33106					0.09635925491511443
RELTGLKALYE	11	Unmodified	_RELTGLKALYE_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.Q183Tfs*5|1|0.35|ENSG00000113368|chr5:126805594-126805595|-/A|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	646.8637084960938	2	646.864077	1291.7136	-0.62496	-0.00040426	0.00012899	8.3441E-08	-0.62483	-0.00040418	646.8638793167621	28.854	0.11549	28.854	28.795	28.911	0					4	2	2	0	0	0	0.64626	1	10634	10634		32.751	0	1	61493			32702	2798	22678	22752	33107	33107					0.07941313286096374
REMATIQING	10	Unmodified	_REMATIQING_					0	0	0			REV__ZNF7|p.K231Sfs*59|1|0.42|ENSG00000147789|chr8:144841793-144841793|A/-|frameshift_variant	REV__ZNF7|p.K231Sfs*59|1|0.42|ENSG00000147789|chr8:144841793-144841793|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.7925415039062	2	566.792598	1131.57064	0.23098	0.00013092	-0.29265	-0.00016587	-0.061679	-3.4959E-05	566.792340288189	11.573	0.13908	11.573	11.514	11.653	0					12	5	3	0	0	0	0.75135	1	2263	2263		12.812	1.1758	1	284220	+		32703	22334	22679	22753	33108	33108					0.010119826232312334
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.3037719726562	2	595.303329	1188.59211	0.7688	0.00045767	-0.62374	-0.00037132	0.14506	8.6353E-05	595.3031901103626	31.378	0.29253	31.378	31.291	31.584	0					22	7	4	0	0	0	0.082776	1	11407	11407		83.647	3.9344	1	840800		+	32704	11562	22680	22754	33109	33109					0.005353676519234796
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	595.3019409179688	2	595.303329	1188.59211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.195	1	31.195	30.695	31.695	0								0	0	0	0.36056	1	10318	10318		22.58	3.317	1			+	32705	11562	22680	22754	33110	33110					0.005353676519234796
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.3040771484375	2	595.303329	1188.59211	1.439	0.00085666	-1.5653	-0.00093183	-0.12627	-7.5169E-05	595.3025421113489	31.405	0.19484	31.405	31.305	31.5	0					9	4	3	0	0	0	0.032383	1	11830	11830		106.68	41.526	1	146910		+	32706	11562	22680	22754	33111	33111					0.005353676519234796
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.3035888671875	2	595.303329	1188.59211	0.070557	4.2003E-05	-0.2784	-0.00016573	-0.20785	-0.00012373	595.3034866576845	31.328	0.40907	31.328	31.224	31.633	0					21	8	4	0	0	0	0.0063888	1	11709	11709		152.06	63.884	1	848700		+	32707	11562	22680	22754	33112	33112					0.005353676519234796
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.3036499023438	2	595.303329	1188.59211	1.6835	0.0010022	-1.5656	-0.00093198	0.11791	7.019E-05	595.3027781062362	31.362	0.26315	31.362	31.258	31.521	0					17	5	4	0	0	0	0.021015	1	11704	11704		120.31	32.61	1	1341100		+	32708	11562	22680	22754	33113	33113					0.005353676519234796
REMRHKLKT	9	Unmodified	_REMRHKLKT_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16553022-16553157:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	599.8434448242188	2	599.845499	1197.67644	-1.8629	-0.0011174	-1.1494	-0.00068947	-3.0123	-0.0018069	599.8446108623112	31.227	0.21393	31.227	31.128	31.342	0					16	6	3	0	0	0	0.53064	1	10718	10718		29.17	1.2878	1	127330			32709	1870	22681	22755	33114	33114					0.08551363259334721
REMVPARIR	9	Unmodified	_REMVPARIR_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3272705078125	2	564.326942	1126.63933	0.14278	8.0573E-05	0.65004	0.00036683	0.79281	0.00044741	564.3272883808402	17.575	0.42114	17.575	17.466	17.887	0					15	8	3	0	0	0	0.33044	1	5234	5234		47.657	12.039	1	534340			32710	9094	22682	22756	33115	33115					0.08107691713553322
RENAERLQ	8	Unmodified	_RENAERLQ_					0	0	0		KCND2|p.R140H|1|0.3|ENSG00000184408|chr7:120275051-120275051|G/A|missense_variant;KCND2|p.A152T|1|0.29|ENSG00000184408|chr7:120275086-120275086|G/A|missense_variant;KCND2|p.T488Nfs*13|1|0.32|ENSG00000184408|chr7:120742591-120742592|-/A|frameshift_variant;KCND2|p.T537Lfs*40|1|0.42|ENSG00000184408|chr7:120745915-120745915|A/-|frameshift_variant;ENSG00000184408|ENST00000331113|KCND2	KCND2|p.R140H|1|0.3|ENSG00000184408|chr7:120275051-120275051|G/A|missense_variant	KCND2|p.R140H|1|0.3|ENSG00000184408|chr7:120275051-120275051|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2675476074219	2	508.267604	1014.52066	-0.10669	-5.4226E-05	-0.048989	-2.49E-05	-0.15568	-7.9126E-05	508.267645169011	16.259	0.26688	16.259	16.2	16.466	0					13	5	3	0	0	0	0.48092	1	4474	4474		62.107	1.9892	1	2258000			32711	7013	22683	22757	33116	33116					0.01397616009558078
RENESNSL	8	Unmodified	_RENESNSL_					0	0	0			REV__ZDHHC20|p.K91N|1|0.39|ENSG00000180776|chr13:21413749-21413749|C/A|missense_variant	REV__ZDHHC20|p.K91N|1|0.39|ENSG00000180776|chr13:21413749-21413749|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7243347167969	2	474.722695	947.430838	3.6326	0.0017245	-0.2449	-0.00011626	3.3877	0.0016082	474.7225761708293	29.283	0.14934	29.283	29.22	29.369	0					9	6	2	0	0	0	0.65148	1	9518	9518		40.778	0	1	87103	+		32712	22305	22684	22758	33117	33117					-0.0449805838965176
RENTQTTI	8	Unmodified	_RENTQTTI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.74859619140625	2	481.748713	961.482873	-0.11397	-5.4907E-05	-0.23349	-0.00011248	-0.34746	-0.00016739	481.7485880929606	19.397	0.18679	19.397	19.294	19.481	0					10	4	3	0	0	0	0.34592	1	5852	5852		77.318	20.597	1	877610			32713	5762	22685	22759	33118	33118					0.0005910502408141838
RENTQTTI	8	Unmodified	_RENTQTTI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7481384277344	2	481.748713	961.482873	-1.3352	-0.00064322	0.76033	0.00036629	-0.57484	-0.00027693	481.7491855313064	19.071	0.16917	19.071	18.993	19.162	0					8	5	2	0	0	0	0.49216	1	5100	5100		60.972	13.315	1	123420			32714	5762	22685	22759	33119	33119					0.0005910502408141838
RENTQTTI	8	Unmodified	_RENTQTTI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7481689453125	2	481.748713	961.482873	-2.9221	-0.0014077	2.2793	0.001098	-0.64287	-0.0003097	481.74964468121436	19.146	0.14528	19.146	19.048	19.193	0					5	3	2	0	0	0	0.3049	1	5153	5153		82.241	5.4664	1	194840			32715	5762	22685	22759	33120	33120					0.0005910502408141838
RENTQTTIKL	10	Unmodified	_RENTQTTIKL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.3391723632812	2	602.338227	1202.6619	1.5613	0.00094044	0.19403	0.00011687	1.7553	0.0010573	602.3382437353928	24.933	0.14073	24.933	24.858	24.999	0					10	4	3	0	0	0	0.35046	1	7438	7438		61.691	3.4614	1	111480			32716	5762	22686	22760	33121	33121					0.06867569592168365
RENTQTTIKL	10	Unmodified	_RENTQTTIKL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.3382568359375	2	602.338227	1202.6619	0.47508	0.00028616	-0.42392	-0.00025534	0.051154	3.0812E-05	602.3380223191607	25.249	0.2394	25.249	25.148	25.388	0					15	5	4	0	0	0	0.06456	1	8612	8612		104.42	28.254	1	1364300			32717	5762	22686	22760	33122	33122					0.06867569592168365
RENTQTTIKL	10	Unmodified	_RENTQTTIKL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.3384399414062	2	602.338227	1202.6619	-0.58662	-0.00035335	1.1216	0.00067556	0.53494	0.00032222	602.3390248777451	24.998	0.19807	24.998	24.904	25.102	0					9	6	2	0	0	0	0.36647	1	7712	7712		59.931	3.497	1	194510			32718	5762	22686	22760	33123	33123					0.06867569592168365
RENTQTTIKL	10	Unmodified	_RENTQTTIKL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.3383178710938	2	602.338227	1202.6619	0.81383	0.0004902	-0.60848	-0.00036651	0.20535	0.00012369	602.3379140471131	25.197	0.22021	25.197	25.138	25.358	0					12	4	4	0	0	0	0.034592	1	8926	8926		114.86	33.333	1	984930			32719	5762	22686	22760	33124	33124					0.06867569592168365
RENTQTTIKL	10	Unmodified	_RENTQTTIKL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.33837890625	2	602.338227	1202.6619	0.46011	0.00027714	-0.00070158	-4.2259E-07	0.45941	0.00027672	602.3380330041465	25.05	0.14516	25.05	24.953	25.098	0					7	3	3	0	0	0	0.049549	1	7914	7914		109.48	13.663	1	146970			32720	5762	22686	22760	33125	33125					0.06867569592168365
REPAQPPRE	9	Unmodified	_REPAQPPRE_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.776123046875	2	540.283254	1078.55196	0.30703	0.00016588	-0.20026	-0.0001082	0.10677	5.7683E-05	540.2834683004963	19.503	0.31161	19.503	19.347	19.659	0					13	6	3	0	0	0	0.42902	1	6164	6164		39.253	1.4413	1	308750			32721	7951	22687	22761	33126	33126					0.01582189043665494
REPEEITEEPS	11	Unmodified	_REPEEITEEPS_					0	0	0		nc|ENSG00000158691|O43309-2|ZSCAN12;ENSG00000158691|ENST00000684592|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	658.2998657226562	2	658.304246	1314.59394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.921	1	26.921	26.421	27.421	0								0	0	0	0.45674	1	8739	8739		21.686	1.6553	1				32722	5278	22688	22762	33127	33127					-0.05077344849155452
REPKKLDP	8	Unmodified	_REPKKLDP_					0	0	0		LAMA1|p.E248K|1|0.11|ENSG00000101680|chr18:7049104-7049104|C/T|missense_variant	LAMA1|p.E248K|1|0.11|ENSG00000101680|chr18:7049104-7049104|C/T|missense_variant	LAMA1|p.E248K|1|0.11|ENSG00000101680|chr18:7049104-7049104|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7869873046875	2	491.787641	981.56073	-0.060862	-2.9931E-05	-1.1152	-0.00054843	-1.176	-0.00057836	491.7870475180924	27.855	0.41181	27.855	27.617	28.029	0					13	8	2	0	0	0	0.68432	1	10115	10115		35.618	8.8222	1	73618			32723	11308	22689	22763	33128	33128					0.06921162680123416
REPRYILL	8	Unmodified	_REPRYILL_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-3|LY9	REV__nc|ENSG00000122224|Q9HBG7-3|LY9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3173828125	2	530.319109	1058.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.718	1	14.718	14.218	15.218	0								0	0	0	1.7419	1	3237	3237		38.806	5.2906	1		+		32724	21004	22690	22764	33129	33129					0.09669728468179528
REPWDPVQA	9	Unmodified	_REPWDPVQA_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2740478515625	2	549.272355	1096.53016	1.1579	0.000636	0.39811	0.00021867	1.556	0.00085467	549.2725598927128	36.221	0.31848	36.221	36.103	36.422	0					23	12	3	0	0	0	0.21263	1	12942	12942		60.118	3.6845	1	177990			32725	5315	22691	22765	33130	33130					-0.01424615704900134
REQELLNTF	9	Unmodified	_REQELLNTF_					0	0	0			REV__FILIP1|p.I519*|1|0.32|ENSG00000118407|chr6:75314277-75314277|T/-|frameshift_variant	REV__FILIP1|p.I519*|1|0.32|ENSG00000118407|chr6:75314277-75314277|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2991333007812	2	575.29857	1148.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.204	1	41.204	40.704	41.704	0								0	0	0	0.28666	1	16374	16374		37.812	5.061	1		+		32726	14219	22692	22766	33131	33131					0.014239226380595937
REQTIAKIS	9	Unmodified	_REQTIAKIS_					0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3043823242188	2	523.303655	1044.59276	1.1043	0.0005779	0.26094	0.00013655	1.3653	0.00071445	523.3035131544204	22.367	0.099701	22.367	22.29	22.39	0					4	2	2	0	0	0	0.28897	1	6648	6648		51.193	3.5354	1	79569	+		32727	19221	22693	22767	33132	33132					0.07224530363305348
RERAVREVL	9	Unmodified	_RERAVREVL_					0	0	0		nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1	nc|ENSG00000164403|Q2M3G4-2|SHROOM1	nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3374633789062	2	564.335821	1126.65709	1.8914	0.0010674	0.90334	0.00050979	2.7948	0.0015772	564.336248098805	33.997	2.6793	33.997	33.829	36.509	0					274	73	6	0	0	0	0.47038	1	13850	13850		35.618	0	1	34739000			32728	5689	22694	22768	33133	33133					0.09882730240087767
REREEREKL	9	Unmodified	_REREEREKL_					0	0	0		ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000164898|Q96HJ9-2|FMC1	REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	622.8392944335938	2	622.838925	1243.6633	0.48631	0.00030289	-0.13876	-8.6426E-05	0.34755	0.00021647	622.8389268752114	14.976	0.17741	14.976	14.891	15.068	0					9	4	3	0	0	0	0.50761	1	3780	3780		24.519	0	1	360190			32729	13856	22695	22769	33134	33134					0.051212036809374695
REREKEREL	9	Unmodified	_REREKEREL_					0	0	0		nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13;nc|ENSG00000123200|Q5T200-2|ZC3H13;ZC3H13|p.R758Sfs*104|1|0.32|ENSG00000123200|chr13:45975468-45975477|CTCTCTCTCC/-|frameshift_variant;ZC3H13|p.R1007Tfs*2|1|0.37|ENSG00000123200|chr13:45969525-45969526|-/T|frameshift_variant;ZC3H13|p.K1006Nfs*31|2|0.28|ENSG00000123200|chr13:45969526-45969526|T/-|frameshift_variant;ZC3H13|p.A1112Vfs*54|1|0.23|ENSG00000123200|chr13:45969209-45969209|G/-|frameshift_variant;ENSG00000111676|ENST00000396684|ATN1	nc|ENSG00000123200|Q5T200|ZC3H13	nc|ENSG00000123200|Q5T200|ZC3H13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.5616455078125	3	415.561709	1243.6633	-0.35649	-0.00014814	0.1817	7.5509E-05	-0.17479	-7.2634E-05	415.56180460558346	14.969	0.3184	14.969	14.86	15.178	0					12	6	3	0	0	0	0.47473	1	3857	3857		35.152	1.0655	1	199560			32730	3308	22696	22770	33135	33135					0.051212036809374695
RERFARGCQ	9	Unmodified	_RERFARGCQ_					0	0	0			REV__ENSG00000249471|ENST00000336614|ZNF324B	REV__ENSG00000249471|ENST00000336614|ZNF324B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7819213867188	2	561.782899	1121.55124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.143	1	19.143	18.643	19.643	0								0	0	0	0.19749	1	5141	5141		51.335	3.6781	1		+		32731	17723	22697	22771	33136	33136					-0.004669288770401181
RERGRPPQGP	10	Unmodified	_RERGRPPQGP_					0	0	0			REV__ENST00000347559.6_1_1:156109356-156109557:+|nuORF	REV__ENST00000347559.6_1_1:156109356-156109557:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.8777160644531	3	383.879372	1148.61629	-0.57523	-0.00022082	-4.348	-0.0016691	-4.9232	-0.0018899	383.87793821906126	25.17	0.22106	25.17	25.11	25.331	0					8	4	3	0	0	0	0.70274	1	8793	8793		21.686	0.73882	1	302080	+		32732	18485	22698	22772	33137	33137					0.047923889204639636
RERLIIWAA	9	Unmodified	_RERLIIWAA_					0	0	0		nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF	nc|ENSG00000128886|Q9HB65-2|ELL3	nc|ENSG00000128886|Q9HB65-2|ELL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.3373413085938	2	564.337833	1126.66111	-1.0734	-0.00060577	0.33918	0.00019141	-0.73423	-0.00041435	564.3379198676312	33.739	2.2056	33.739	33.628	35.834	0					232	72	5	0	0	0	0.44593	1	12317	12317		30.504	12.179	1	7060700			32733	3568	22699	22773	33138	33138					0.10284819733828954
RERLQAAE	8	Unmodified	_RERLQAAE_					0	0	0		ENST00000494080.5_1_11:64109984-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B;CCDC88B|p.W639Gfs*3|1|0.52|ENSG00000168071|chr11:64344456-64344456|T/-|frameshift_variant	ENST00000494080.5_1_11:64109984-64120281:+|nuORF	ENST00000494080.5_1_11:64109984-64120281:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2660217285156	2	486.764697	971.514842	1.2374	0.00060231	-1.8389	-0.00089513	-0.60157	-0.00029282	486.7636038123962	17.964	0.097462	17.964	17.89	17.988	0					4	2	2	0	0	0	0.66095	1	4390	4390		39.253	5.0803	1	44587			32734	6057	22700	22774	33139	33139					0.027945174978981413
RERPHLRG	8	Unmodified	_RERPHLRG_					0	0	0			REV__ENST00000359518.7_1_11:6486953-6494439:-|nuORF	REV__ENST00000359518.7_1_11:6486953-6494439:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.796142578125	2	510.794124	1019.57369	4.0659	0.0020768	-0.21546	-0.00011006	3.8504	0.0019668	510.794050654761	35.157	0.28978	35.157	35.071	35.361	0					23	13	3	0	0	0	0.5676	1	11861	11861		53.351	53.351	1	228640	+		32735	18549	22701	22775	33140	33140					0.06469038582906705
RERQKQAVL	9	Unmodified	_RERQKQAVL_					0	0	0			REV__ENSG00000162191|ENST00000301935|UBXN1	REV__ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.33740234375	2	564.335821	1126.65709	1.4449	0.00081543	1.7364	0.00097991	3.1813	0.0017953	564.3367875367292	33.714	0.4626	33.714	33.636	34.099	0					31	19	2	0	0	0	0.45358	1	10983	10983		37.159	16.212	1	203590	+		32736	15804	22702	22776	33141	33141					0.09882730240087767
RERSKETAG	9	Unmodified	_RERSKETAG_					0	0	0			REV__nc|ENSG00000160191|O76083-12|PDE9A	REV__nc|ENSG00000160191|O76083-12|PDE9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2740478515625	2	517.272887	1032.53122	4.6827	0.0024222	-2.4537	-0.0012692	2.229	0.001153	517.2713866909517	30.785	0.13759	30.785	30.719	30.857	0					7	4	2	0	0	0	0.22377	1	10153	10153		58.782	0.55203	1	75714	+		32737	21089	22703	22777	33142	33142					0.016255986639862385
RESDLSSKTQL	11	Unmodified	_RESDLSSKTQL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;ENST00000555164.2_1_14:56119589-56122865:+|nuORF	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	632.3306274414062	2	632.330598	1262.64664	1.1038	0.00069797	-0.98449	-0.00062252	0.11932	7.5447E-05	632.329920400827	23.523	0.17119	23.523	23.433	23.604	0					10	4	3	0	0	0	0.079044	1	7810	7810		94.82	34.701	1	422680			32738	3486	22704	22778	33143	33143					0.025826580043485592
RESGTLLELK	10	Unmodified	_RESGTLLELK_					0	0	0		ENST00000561237.1_1_15:45021341-45023561:+|nuORF;ENST00000559390.5_1_15:45021236-45021584:+|nuORF	ENST00000561237.1_1_15:45021341-45023561:+|nuORF	ENST00000561237.1_1_15:45021341-45023561:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.3306884765625	2	573.32987	1144.64519	-0.12422	-7.122E-05	1.117	0.00064039	0.99274	0.00056917	573.3303372402057	34.254	0.67103	34.254	34.06	34.731	0					40	17	3	0	0	0	0.030421	1	12730	12730		117.81	2.317	1	1850600			32739	10678	22705	22779	33144	33144					0.0786506870622361
RESGTLLELK	10	Unmodified	_RESGTLLELK_					0	0	0		ENST00000561237.1_1_15:45021341-45023561:+|nuORF;ENST00000559390.5_1_15:45021236-45021584:+|nuORF	ENST00000561237.1_1_15:45021341-45023561:+|nuORF	ENST00000561237.1_1_15:45021341-45023561:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.8314819335938	2	573.32987	1144.64519	-1.4713	-0.00084354	1.9649	0.0011265	0.49362	0.00028301	573.3308155362879	34.007	0.2113	34.007	33.918	34.13	0					15	6	3	0	0	0	0.08194	1	11992	11992		98.582	13.421	1	251740			32740	10678	22705	22779	33145	33145					0.0786506870622361
RESHRGLF	8	Unmodified	_RESHRGLF_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2684020996094	2	501.267407	1000.52026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.83	1	16.83	16.33	17.33	0								0	0	0	1.7419	1	4742	4742		30.504	0	1		+		32741	13756	22706	22780	33146	33146					0.02002241080379008
RESIGALN	8	Unmodified	_RESIGALN_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-3|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-3|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.23492431640625	2	430.235242	858.45593	-0.50548	-0.00021748	0.17219	7.4084E-05	-0.33329	-0.00014339	430.23520755668176	18.892	0.11668	18.892	18.834	18.951	0					4	2	2	0	0	0	0.2678	1	5890	5890		93.195	0	1	221520	+		32742	15083	22707	22781	33147	33147					0.02104041203574525
RESQDTSFTTL	11	Unmodified	_RESQDTSFTTL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	642.8067016601562	2	642.806956	1283.59936	0.59348	0.00038149	-0.9167	-0.00058926	-0.32322	-0.00020777	642.8063494687924	34.558	0.16956	34.558	34.443	34.612	0					10	4	3	0	0	0	0.65797	1	12897	12897		31.634	7.1151	1	137730			32743	7554	22708	22782	33148	33148					-0.03109621266639806
RESQDTSFTTL	11	Unmodified	_RESQDTSFTTL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	642.80712890625	2	642.806956	1283.59936	-0.50306	-0.00032337	0.19834	0.00012749	-0.30473	-0.00019588	642.8077405761302	34.56	0.168	34.56	34.48	34.648	0					7	4	2	0	0	0	0.42065	1	13342	13342		50.034	2.074	1	108540			32744	7554	22708	22782	33149	33149					-0.03109621266639806
RESRGVPALG	10	Unmodified	_RESRGVPALG_					0	0	0			REV__ENST00000439649.7_1_10:118030569-118032684:-|nuORF	REV__ENST00000439649.7_1_10:118030569-118032684:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2938232421875	2	521.293622	1040.57269	0.075379	3.9294E-05	-1.6571	-0.00086384	-1.5817	-0.00082455	521.2937921259977	17.347	0.20868	17.347	17.213	17.421	0					8	5	2	0	0	0	0.41055	1	4864	4864		51.193	0	1	447690	+		32745	18620	22709	22783	33150	33150					0.054027794233206805
RESSIKKK	8	Unmodified	_RESSIKKK_					0	0	0			REV__ENSG00000100644|ENST00000337138|HIF1A	REV__ENSG00000100644|ENST00000337138|HIF1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.3027648925781	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.891	1	24.891	24.391	25.391	0								0	0	0	1.7419	1	8766	8766		32.812	0.85756	1		+		32746	13568	22710	22784	33151	33151					0.09896851571465959
RESSQSSL	8	Unmodified	_RESSQSSL_					0	0	0		ENST00000530022.5_1_11:8706389-8707279:+|nuORF	ENST00000530022.5_1_11:8706389-8707279:+|nuORF	ENST00000530022.5_1_11:8706389-8707279:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.2214660644531	2	447.219788	892.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.161	1	38.161	37.661	38.661	0								0	0	0	1.7419	1	14961	14961		68.485	5.1784	1				32747	10421	22711	22785	33152	33152					-0.02549156901329752
RESTGAQVQV	10	Unmodified	_RESTGAQVQV_					0	0	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENSG00000169564|ENST00000303577|PCBP1	nc|ENSG00000197111|Q15366|PCBP2;ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.781005859375	2	537.780544	1073.54654	0.7772	0.00041796	0.05219	2.8067E-05	0.82939	0.00044603	537.7807581540768	22.214	0.15936	22.214	22.12	22.279	0					11	5	3	0	0	0	0.56063	1	6238	6238		38.754	3.1353	1	205580			32748	6170;7427	22712	22786	33153	33153					0.01270465461175263
RESTGAQVQV	10	Unmodified	_RESTGAQVQV_					0	0	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENSG00000169564|ENST00000303577|PCBP1	nc|ENSG00000197111|Q15366|PCBP2;ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7815551757812	2	537.780544	1073.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.536	1	22.536	22.036	23.036	0								0	0	0	0.14936	1	7336	7336		70.399	17.047	1				32749	6170;7427	22712	22786	33154	33154					0.01270465461175263
RESTGAQVQV	10	Unmodified	_RESTGAQVQV_					0	0	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENSG00000169564|ENST00000303577|PCBP1	nc|ENSG00000197111|Q15366|PCBP2;ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7819213867188	2	537.780544	1073.54654	1.022	0.00054963	0.62581	0.00033655	1.6479	0.00088618	537.781067944659	22.296	0.14402	22.296	22.246	22.39	0					6	3	2	0	0	0	0.41384	1	6627	6627		54.722	8.2656	1	201990			32750	6170;7427	22712	22786	33155	33155					0.01270465461175263
RESTGAQVQV	10	Unmodified	_RESTGAQVQV_					0	0	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENSG00000169564|ENST00000303577|PCBP1	nc|ENSG00000197111|Q15366|PCBP2;ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7808837890625	2	537.780544	1073.54654	1.9976	0.0010743	-1.0185	-0.00054771	0.97916	0.00052657	537.7798458622046	22.43	0.31744	22.43	22.321	22.638	0					19	6	4	0	0	0	0.13022	1	7469	7469		90.149	33.715	1	1876000			32751	6170;7427	22712	22786	33156	33156					0.01270465461175263
RETAENEWPP	10	Unmodified	_RETAENEWPP_					0	0	0			REV__ENSG00000134460|ENST00000379959|IL2RA	REV__ENSG00000134460|ENST00000379959|IL2RA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.7825927734375	2	614.783284	1227.55202	0.34913	0.00021464	-2.3075	-0.0014186	-1.9583	-0.0012039	614.781994324652	28.165	0.16249	28.165	28.112	28.275	0					5	3	2	0	0	0	0.60076	1	10301	10301		34.173	1.3601	1	78109	+		32752	14746	22713	22787	33157	33157					-0.052658557470067535
RETFQVLNM	9	Unmodified	_RETFQVLNM_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.L553V|1|0.29|ENSG00000196235|chr19:39470503-39470503|C/G|missense_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2894897460938	2	569.289691	1136.56483	3.4459	0.0019617	-2.2891	-0.0013031	1.1569	0.0006586	569.2883541397601	43.242	0.17255	43.242	43.134	43.307	0					10	6	2	0	0	0	0.38666	1	17303	17303		42.864	1.4377	1	71551			32753	22500	22714	22788	33158	33158					0.0020088411154119967
RETGESQYR	9	Unmodified	_RETGESQYR_					0	0	0			REV__FLG|p.H3957R|1|0.15|ENSG00000143631|chr1:152303016-152303016|T/C|missense_variant	REV__FLG|p.H3957R|1|0.15|ENSG00000143631|chr1:152303016-152303016|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.2684936523438	2	563.267801	1124.52105	1.7825	0.001004	-0.58027	-0.00032685	1.2023	0.0006772	563.2674439435433	15.494	0.25952	15.494	15.41	15.669	0					9	6	2	0	0	0	0.1424	1	4025	4025		69.628	9.5094	1	825290	+		32754	20676	22715	22789	33159	33159					-0.03623009061243465
RETGESQYR	9	Unmodified	_RETGESQYR_					0	0	0			REV__FLG|p.H3957R|1|0.15|ENSG00000143631|chr1:152303016-152303016|T/C|missense_variant	REV__FLG|p.H3957R|1|0.15|ENSG00000143631|chr1:152303016-152303016|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.2685546875	2	563.267801	1124.52105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.519	1	15.519	15.019	16.019	0								0	0	0	0.23445	1	4110	4110		45.972	3.5761	1		+		32755	20676	22715	22789	33160	33160					-0.03623009061243465
RETIKVIPR	9	Unmodified	_RETIKVIPR_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	371.23443603515625	3	371.236385	1110.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.703	1	30.703	30.203	31.203	0								0	0	0	0.29356	1	10487	10487		36.447	3.6343	1		+		32756	15722	22716	22790	33161	33161					0.13641088905251308
RETLQQHKL	9	Unmodified	_RETLQQHKL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.88763427734375	3	384.887645	1151.64111	0.1885	7.2553E-05	-0.81946	-0.0003154	-0.63095	-0.00024285	384.88745616181694	18.619	0.16699	18.619	18.51	18.677	0					5	3	2	0	0	0	0.040209	1	5735	5735		99.013	15.366	1	147630			32757	5919	22717	22791	33162	33162					0.07135024003196122
RETNTILTI	9	Unmodified	_RETNTILTI_					0	0	0			REV__ENST00000524718.5_1_11:130059967-130066600:+|nuORF	REV__ENST00000524718.5_1_11:130059967-130066600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3043823242188	2	530.803488	1059.59242	0.28765	0.00015268	1.6512	0.00087645	1.9388	0.0010291	530.8057602293684	45.629	0.24804	45.629	45.498	45.746	0					33	13	3	0	0	0	0.33044	1	17612	17612		47.657	3.2801	1	318400	+		32758	15418	22718	22792	33163	33163					0.06501110643444008
RETPGAADPK	10	Unmodified	_RETPGAADPK_					0	0	0		ENST00000299952.4_1_16:71660520-71674304:+|nuORF;ENST00000268485.7_1_16:71660520-71668122:+|nuORF	ENST00000299952.4_1_16:71660520-71674304:+|nuORF	ENST00000299952.4_1_16:71660520-71674304:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.272216796875	2	521.269813	1040.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.465	1	38.465	37.965	38.965	0								0	0	0	0.38879	1	12974	12974		33.922	1.9668	1				32759	8371	22719	22793	33164	33164					0.006430804324509154
RETRSRKPG	9	Unmodified	_RETRSRKPG_					0	0	0		ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8113403320312	2	543.809971	1085.60539	3.653	0.0019866	-0.84622	-0.00046018	2.8068	0.0015264	543.8093771591084	16.523	0.41746	16.523	16.217	16.634	0					13	8	3	0	0	0	0.1236	1	4601	4601		73.975	73.975	1	2660000			32760	7033	22720	22794	33165	33165					0.06600986546163767
RETSMVHEL	9	Unmodified	_RETSMVHEL_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2725219726562	2	551.271498	1100.52844	1.7497	0.00096459	-0.71132	-0.00039213	1.0384	0.00057246	551.2713626833167	25.311	0.1525	25.311	25.209	25.362	0					7	3	3	0	0	0	0.18416	1	8623	8623		63.534	14.092	1	94573			32761	1300	22721	22795	33166	33166					-0.017799927851683606
RETSMVHEL	9	Unmodified	_RETSMVHEL_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.2725219726562	2	551.271498	1100.52844	4.6031	0.0025375	-2.9477	-0.001625	1.6554	0.00091255	551.2699319574418	25.075	0.14143	25.075	25.004	25.145	0					8	4	2	0	0	0	0.5741	1	7746	7746		24.519	0.31644	1	107690			32762	1300	22721	22795	33167	33167					-0.017799927851683606
RETSMVHEL	9	Unmodified	_RETSMVHEL_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.272216796875	2	551.271498	1100.52844	0.44195	0.00024363	-0.054753	-3.0184E-05	0.38719	0.00021345	551.2717462839689	25.265	0.36454	25.265	25.155	25.519	0					16	7	4	0	0	0	0.085655	1	8956	8956		82.75	5.4329	1	823050			32763	1300	22721	22795	33168	33168					-0.017799927851683606
RETSQTKVL	9	Unmodified	_RETSQTKVL_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3006591796875	2	531.301113	1060.58767	-0.15631	-8.305E-05	1.7811	0.0009463	1.6248	0.00086325	531.302000888737	18.266	0.11026	18.266	18.204	18.314	0					6	4	2	0	0	0	0.35021	1	4735	4735		45.972	0	1	113620			32764	1202	22722	22796	33169	33169					0.0598022650067378
RETSTGMGYLN	11	Unmodified	_RETSTGMGYLN_					0	0	0			REV__ENSG00000163114|ENST00000295266|PDHA2	REV__ENSG00000163114|ENST00000295266|PDHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.7847900390625	2	614.78497	1227.55539	0.34809	0.000214	-0.67531	-0.00041517	-0.32722	-0.00020117	614.7847749827063	16.793	0.25059	16.793	16.696	16.947	0					10	5	3	0	0	0	0.67178	1	4886	4886		30.318	3.6248	1	314270	+		32765	15861	22723	22797	33170	33170					-0.04928928964613988
RETVIKQTM	9	Unmodified	_RETVIKQTM_					0	0	0		ENST00000508652.5_1_4:164415907-164436651:+|nuORF;ENSG00000198498|ENST00000358572|TMA16	ENST00000508652.5_1_4:164415907-164436651:+|nuORF	ENST00000508652.5_1_4:164415907-164436651:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.3056640625	2	553.305341	1104.59613	1.6107	0.0008912	-0.97759	-0.00054091	0.6331	0.00035029	553.305245370911	21.617	0.6128	21.617	21.458	22.07	0					20	12	4	0	0	0	0.046074	1	7206	7206		96.665	6.2952	1	1726100			32766	7568	22724	22798	33171	33171					0.048014571456405974
RETVIKQTM	9	Unmodified	_RETVIKQTM_					0	0	0		ENST00000508652.5_1_4:164415907-164436651:+|nuORF;ENSG00000198498|ENST00000358572|TMA16	ENST00000508652.5_1_4:164415907-164436651:+|nuORF	ENST00000508652.5_1_4:164415907-164436651:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3055419921875	2	553.305341	1104.59613	1.8196	0.0010068	-1.6318	-0.00090291	0.18771	0.00010386	553.3045567472574	21.628	0.36493	21.628	21.522	21.887	0					14	7	4	0	0	0	0.032181	1	7082	7082		106.88	29.563	1	1598100			32767	7568	22724	22798	33172	33172					0.048014571456405974
RETVNYSI	8	Unmodified	_RETVNYSI_					0	0	0			REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2956848144531	2	491.253631	980.49271	-0.52397	-0.0002574	0.26081	0.00012812	-0.26316	-0.00012928	491.25378810373866	25.871	0.43184	25.871	25.732	26.164	0					21	8	4	0	0	0	0.5535	1	8843	8843		54.776	0	1	3597300	+		32768	16974	22725	22799	33173	33173					0.0016829302946916869
REVAGHTEQL	10	Unmodified	_REVAGHTEQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000468880.1_1_17:39680334-39681232:-|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.294189453125	2	570.293819	1138.57309	0.097288	5.5483E-05	0.21078	0.00012021	0.30807	0.00017569	570.2941005355514	20.631	0.11129	20.631	20.555	20.667	0					8	3	3	0	0	0	0.55031	1	5802	5802		39.873	11.991	1	190080		+	32769	635	22726	22800	33174	33174					0.009341543525124507
REVAGHTEQL	10	Unmodified	_REVAGHTEQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000468880.1_1_17:39680334-39681232:-|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.2942504882812	2	570.293819	1138.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.727	1	20.727	20.227	21.227	0								0	0	0	0.2919	1	5883	5883		52.167	9.3029	1			+	32770	635	22726	22800	33175	33175					0.009341543525124507
REVAGHTEQL	10	Unmodified	_REVAGHTEQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000468880.1_1_17:39680334-39681232:-|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.294189453125	2	570.293819	1138.57309	-1.3548	-0.00077266	2.0202	0.0011521	0.66532	0.00037943	570.2949075484037	20.715	0.19664	20.715	20.629	20.825	0					5	4	2	0	0	0	0.70274	1	5896	5896		21.686	4.3208	1	91933		+	32771	635	22726	22800	33176	33176					0.009341543525124507
REVAGHTEQL	10	Unmodified	_REVAGHTEQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000468880.1_1_17:39680334-39681232:-|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.2943115234375	2	570.293819	1138.57309	1.6209	0.00092438	-0.63684	-0.00036318	0.98405	0.0005612	570.2932614235541	20.836	0.26551	20.836	20.726	20.992	0					9	5	3	0	0	0	0.071575	1	6697	6697		102.06	39.954	1	1047900		+	32772	635	22726	22800	33177	33177					0.009341543525124507
REVCTVLPGD	10	Carbamidomethyl (C)	_REVC(Carbamidomethyl (C))TVLPGD_	REVC(1)TVLPGD		REVC(83)TVLPGD		0	1	0			REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.2864990234375	2	573.284605	1144.55466	3.3622	0.0019275	0.10643	6.1012E-05	3.4686	0.0019885	573.2846662859545	16.965	0.46704	16.965	16.859	17.326	0					27	9	5	0	0	0	0.17315	1	4814	4814		82.75	9.8712	1	12710000	+		32773	19710	22727	22801	33178	33178	695				-0.011837236136898355
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.8021240234375	2	553.80128	1105.58801	1.4135	0.00078278	0.32699	0.00018108	1.7404	0.00096386	553.8015582739839	26.298	0.17959	26.298	26.219	26.398	0					12	5	3	0	0	0	0.24334	1	7966	7966		56.434	12.057	1	203380			32774	2650	22728	22802	33179	33179					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8015747070312	2	553.80128	1105.58801	0.18524	0.00010258	0.47238	0.0002616	0.65761	0.00036419	553.8018007282308	26.318	0.14564	26.318	26.21	26.356	0					7	4	2	0	0	0	0.30951	1	8253	8253		49.442	3.4896	1	93455			32775	2650	22728	22802	33180	33180					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8016357421875	2	553.80128	1105.58801	0.49965	0.00027671	0.13709	7.5918E-05	0.63674	0.00035263	553.8014261096441	26.535	0.56752	26.535	26.426	26.994	0					19	11	3	0	0	0	0.16806	1	9518	9518		65.465	5.3471	1	781320			32776	2650	22728	22802	33181	33181					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.8023071289062	2	553.80128	1105.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.38	1	26.38	25.88	26.88	0								0	0	0	0.30009	1	8486	8486		35.152	1.2304	1				32777	2650	22728	22802	33182	33182					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.8016357421875	2	553.80128	1105.58801	0.92533	0.00051245	-0.19174	-0.00010619	0.73359	0.00040626	553.8011842733058	26.503	0.61951	26.503	26.349	26.968	0					26	12	4	0	0	0	0.11898	1	9360	9360		75.043	12.936	1	1653600			32778	2650	22728	22802	33183	33183					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.801513671875	2	553.80128	1105.58801	1.8193	0.0010076	-0.91733	-0.00050802	0.902	0.00049953	553.8007484801321	26.494	0.82091	26.494	26.383	27.204	0					21	16	2	0	0	0	0.11898	1	9376	9376		75.043	2.1641	1	2062500			32779	2650	22728	22802	33184	33184					0.03943646220500341
REVEIQSHL	9	Unmodified	_REVEIQSHL_					0	0	0		chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA;ENSG00000087586|ENST00000395915|AURKA	chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA	chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7991333007812	2	555.798737	1109.58292	1.0897	0.00060564	-0.18028	-0.0001002	0.90939	0.00050544	555.798572150841	26.562	0.16814	26.562	26.451	26.62	0					6	3	2	0	0	0	0.076532	1	9411	9411		85.862	11.607	1	171560			32780	530	22729	22803	33185	33185					0.03251342357907561
REVINALK	8	Unmodified	_REVINALK_					0	0	0			REV__ENSG00000116525|ENST00000291416|TRIM62	REV__ENSG00000116525|ENST00000291416|TRIM62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7898864746094	2	471.790184	941.565815	-0.55994	-0.00026418	0.15993	7.5456E-05	-0.40001	-0.00018872	471.79017830588435	23.393	0.21658	23.393	23.284	23.501	0					9	4	3	0	0	0	0.50061	1	7939	7939		60.118	0	1	961550	+		32781	14145	22730	22804	33186	33186					0.09269466542764349
REVKQKISP	9	Unmodified	_REVKQKISP_					0	0	0		nc|ENSG00000198690|Q9Y2M0-2|FAN1;ENSG00000198690|ENST00000362065|FAN1	nc|ENSG00000198690|Q9Y2M0-2|FAN1	nc|ENSG00000198690|Q9Y2M0-2|FAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.8265991210938	2	542.827298	1083.64004	0.26229	0.00014238	1.1508	0.00062468	1.4131	0.00076705	542.8275543998313	26.372	0.14231	26.372	26.274	26.416	0					6	4	2	0	0	0	0.40353	1	8285	8285		41.427	3.6151	1	46423			32782	7587	22731	22805	33187	33187					0.10156809634281672
REVLPSTRL	9	Unmodified	_REVLPSTRL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.8198852539062	2	535.819473	1069.62439	1.2318	0.00066001	-0.26365	-0.00014127	0.96814	0.00051875	535.8193905707249	28.404	0.25701	28.404	28.291	28.548	0					11	5	3	0	0	0	0.36135	1	10410	10410		45.022	2.1579	1	118200			32783	7433	22732	22806	33188	33188					0.09236523117237994
REVSSLKNKL	10	Unmodified	_REVSSLKNKL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.9031677246094	3	391.903183	1172.68772	0.37467	0.00014683	-0.56493	-0.0002214	-0.19026	-7.4564E-05	391.90305569167714	20.972	0.21479	20.972	20.863	21.078	0					9	4	3	0	0	0	0.41729	1	6896	6896		54.343	4.8775	1	1095600			32784	2007	22733	22807	33189	33189					0.10828463834468494
REVTAPGATTL	11	Unmodified	_REVTAPGATTL_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.3065795898438	2	558.306395	1114.59824	-0.84532	-0.00047195	0.9863	0.00055066	0.14097	7.8706E-05	558.3070414558234	28.593	0.20429	28.593	28.506	28.71	0					11	5	3	0	0	0	0.16041	1	9517	9517		70.399	32.587	1	317670			32785	6636	22734	22808	33190	33190					0.04552209155099263
REVVAGSHEL	10	Unmodified	_REVVAGSHEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.791259765625	2	548.790912	1095.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.275	1	22.275	21.775	22.775	0								0	0	0	0.3805	1	7384	7384		36.447	8.5645	1				32786	2899	22735	22809	33191	33191					0.023310558408638826
REVVETPLL	9	Unmodified	_REVVETPLL_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;PSMC2|p.A269Pfs*34|1|0.07|ENSG00000161057|chr7:103366117-103366117|A/-|frameshift_variant;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3089599609375	2	528.308406	1054.60226	0.28524	0.00015069	0.29966	0.00015831	0.5849	0.00030901	528.3085033585082	40.067	0.16452	40.067	39.946	40.111	0					9	5	2	0	0	0	0.28897	1	15775	15775		51.193	10.415	1	102060			32787	5403	22736	22810	33192	33192					0.07714298648807016
REWGAPGT	8	Unmodified	_REWGAPGT_					0	0	0		ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF	ENST00000482969.5_1_22:50693515-50695072:-|nuORF	ENST00000482969.5_1_22:50693515-50695072:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2141418457031	2	437.214309	872.414065	-0.92501	-0.00040443	0.54194	0.00023694	-0.38308	-0.00016749	437.2145516683334	22.172	0.44072	22.172	22.071	22.511	0					29	13	4	0	0	0	0.49887	1	6459	6459		60.294	23.135	1	2343300			32788	9974	22737	22811	33193	33193					-0.027245144849530334
REWRCFQWWRM	11	Unmodified	_REWRCFQWWRM_					0	0	0		ENST00000430334.7_1_17:43555485-43568071:-|nuORF;ENST00000582986.5_1_17:62801160-62833227:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.9303588867188	3	561.930973	1682.77109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.123	1	22.123	21.623	22.623	0								0	0	0	0.45674	1	7137	7137		0.37141	0	1				32789	9486	22738	22812	33194	33194					-0.04298446261009303
REWWIQRI	8	Unmodified	_REWWIQRI_					0	0	0			REV__ENST00000495435.1_1_1:11193031-11204809:-|nuORF	REV__ENST00000495435.1_1_1:11193031-11204809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.8303833007812	2	593.827632	1185.64071	3.1732	0.0018843	1.4437	0.00085729	4.6169	0.0027416	593.8286369908167	27.079	0.16802	27.079	27.019	27.187	0					8	3	3	0	0	0	0.24844	1	9664	9664		104.75	30.492	1	956750	+		32790	17431	22739	22813	33195	33195					0.05531649073964218
REYPLILR	8	Unmodified	_REYPLILR_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.3185424804688	2	530.319109	1058.62366	1.2037	0.00063833	-2.9165	-0.0015467	-1.7129	-0.00090836	530.317397195282	15.842	0.15011	15.842	15.748	15.898	0					12	6	3	0	0	0	0.65148	1	3627	3627		40.778	3.6191	1	94362	+		32791	15442	22740	22814	33196	33196					0.09669728468179528
REYQELLNTK	10	Unmodified	_REYQELLNTK_					0	0	0		CON__Q9DCV7	CON__Q9DCV7	CON__Q9DCV7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.8963928222656	3	431.898098	1292.67246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.155	1	22.155	21.655	22.655	0								0	0	0	0.41137	1	6221	6221		27.047	1.9213	1			+	32792	671	22741	22815	33197	33197					0.03783552246613908
REYQELMNV	9	Unmodified	_REYQELMNV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.2833862304688	2	591.284605	1180.55466	0.23946	0.00014159	-0.095512	-5.6475E-05	0.14394	8.5112E-05	591.2845367010406	37.459	0.42237	37.459	37.283	37.705	0					24	12	3	0	0	0	0.1424	1	14178	14178		69.628	14.851	1	478450		+	32793	11643;666	22742	22816	33198	33198					-0.028397236137152504
REYQELMNV	9	Unmodified	_REYQELMNV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.2844848632812	2	591.284605	1180.55466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.424	1	37.424	36.924	37.924	0								0	0	0	0.23445	1	14637	14637		45.972	12.051	1			+	32794	11643;666	22742	22816	33199	33199					-0.028397236137152504
REYQELMNV	9	Unmodified	_REYQELMNV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	591.2848510742188	2	591.284605	1180.55466	-1.7782	-0.0010514	1.8339	0.0010844	0.055731	3.2953E-05	591.2856000983281	37.194	0.1418	37.194	37.125	37.267	0					13	7	2	0	0	0	0.27249	1	13321	13321		52.937	11.51	1	72297		+	32795	11643;666	22742	22816	33200	33200					-0.028397236137152504
REYQELMNV	9	Unmodified	_REYQELMNV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8;CON__Q8BGZ7	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.2848510742188	2	591.284605	1180.55466	3.1803	0.0018805	-1.5731	-0.00093017	1.6072	0.00095029	591.2828219651656	37.327	0.64798	37.327	36.948	37.596	0					32	13	4	0	0	0	0.11411	1	14600	14600		76.17	19.449	1	1390000		+	32796	11643;666	22742	22816	33201	33201					-0.028397236137152504
RFACAVVCIQK	11	Unmodified	_RFACAVVCIQK_					0	0	0		ABCE1|p.L313Wfs*10|1|0.22|ENSG00000164163|chr4:145119941-145119941|T/-|frameshift_variant;ENSG00000164163|ENST00000296577|ABCE1	ABCE1|p.L313Wfs*10|1|0.22|ENSG00000164163|chr4:145119941-145119941|T/-|frameshift_variant	ABCE1|p.L313Wfs*10|1|0.22|ENSG00000164163|chr4:145119941-145119941|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	619.3306274414062	2	619.330836	1236.64712	-0.23667	-0.00014657	-0.0091231	-5.6502E-06	-0.24579	-0.00015222	619.3308270927641	24.944	0.25189	24.944	24.864	25.115	0					16	6	4	0	0	0	0.13369	1	8471	8471		82.241	82.241	1	1391000			32797	18	22743	22817	33202	33202					0.038260829188175194
RFALPFEIQ	9	Unmodified	_RFALPFEIQ_					0	0	0			REV__ENST00000542466.2_1_12:58120838-58121579:+|nuORF	REV__ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.8095703125	2	560.811116	1119.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.741	1	23.741	23.241	24.241	0								0	0	0	0.27939	1	7295	7295		39.253	5.0803	1		+		32798	20145	22744	22818	33203	33203					0.052660222312852056
RFCCLLIPL	9	Unmodified	_RFCCLLIPL_					0	0	0			REV__nc|ENSG00000171053|Q8WXA2-2|PATE1	REV__nc|ENSG00000171053|Q8WXA2-2|PATE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3015747070312	2	539.301016	1076.58748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.113	1	40.113	39.613	40.613	0								0	0	0	0.39036	1	15800	15800		13.775	9.4591	1		+		32799	16395	22745	22819	33204	33204					0.05224811975472221
RFEAAAIQHL	10	Unmodified	_RFEAAAIQHL_					0	0	0		ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.88043212890625	3	385.88049	1154.61964	-1.178	-0.00045456	0.93278	0.00035994	-0.24519	-9.4612E-05	385.8808166429948	23.963	0.24697	23.963	23.879	24.126	0					11	8	2	0	0	0	0.45669	1	7274	7274		50.034	7.1692	1	115270			32800	8101	22746	22820	33205	33205					0.048516389744463595
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;PIAS3|p.L222Cfs*56|1|0.24|ENSG00000131788|chr1:145855741-145855741|G/-|frameshift_variant;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.2803955078125	2	592.28018	1182.54581	0.083241	4.9302E-05	-0.10852	-6.4271E-05	-0.025274	-1.4969E-05	592.2801259957472	38.552	0.36065	38.552	38.449	38.81	0					14	7	3	0	0	0	0.38666	1	15177	15177		42.864	3.6114	1	153810			32801	3742	22747	22821	33206	33206					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;PIAS3|p.L222Cfs*56|1|0.24|ENSG00000131788|chr1:145855741-145855741|G/-|frameshift_variant;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.2803344726562	2	592.28018	1182.54581	1.4156	0.00083844	-0.63051	-0.00037344	0.7851	0.000465	592.2800203468066	38.585	0.77939	38.585	38.202	38.981	0					23	16	2	0	0	0	0.18416	1	15172	15172		63.534	10.597	1	360440			32802	3742	22747	22821	33207	33207					-0.03816329187861811
RFFFRVFIFYY	11	Unmodified	_RFFFRVFIFYY_					0	0	0		ENST00000220003.13_1_15:75095155-75095200:+|nuORF	ENST00000220003.13_1_15:75095155-75095200:+|nuORF	ENST00000220003.13_1_15:75095155-75095200:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.95166015625	3	535.618607	1603.83399	0.70543	0.00037784	-2.8839	-0.0015447	-2.1785	-0.0011668	535.6172116923066	40.419	0.45925	40.419	40.147	40.606	0					15	10	2	0	0	0	0.83931	1	16034	16034		6.6596	3.6336	1	88584			32803	8174	22748	22822	33208	33208					0.05622766070382568
RFFKTLYCFSN	11	Unmodified	_RFFKTLYCFSN_					0	0	0		nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.9040222167969	3	475.904307	1424.69109	-0.61893	-0.00029455	-0.098801	-4.702E-05	-0.71773	-0.00034157	475.90437378042884	24.87	0.45897	24.87	24.771	25.23	0					15	9	3	0	0	0	0.77537	1	8628	8628		20.315	2.4819	1	531050			32804	7738	22749	22823	33209	33209					-0.004266093831574835
RFFTISTL	8	Unmodified	_RFFTISTL_					0	0	0			REV__UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant;REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	328.8551025390625	3	328.855282	983.544017	0.28558	9.3915E-05	-1.0366	-0.00034088	-0.75098	-0.00024696	328.8550542694381	34.704	0.14076	34.704	34.625	34.766	0					9	6	2	0	0	0	0.79176	1	11363	11363		24.203	6.8378	1	94779	+		32805	17420;14934	22750	22824	33210	33210					0.051586617941893564
RFGTGAASLLQ	11	Unmodified	_RFGTGAASLLQ_					0	0	0			REV__KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant	REV__KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.8093872070312	2	560.809105	1119.60366	1.7925	0.0010053	-1.6458	-0.00092296	0.14674	8.2291E-05	560.8080575128682	23.923	0.49236	23.923	23.832	24.324	0					24	11	4	0	0	0	0.11999	1	7999	7999		84.817	11.938	1	1182400	+		32806	20772	22751	22825	33211	33211					0.04863932737566756
RFGTGAASLLQ	11	Unmodified	_RFGTGAASLLQ_					0	0	0			REV__KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant	REV__KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.8092041015625	2	560.809105	1119.60366	1.5557	0.00087246	-0.90014	-0.0005048	0.65558	0.00036766	560.8084618838293	23.734	0.12391	23.734	23.653	23.777	0					6	3	2	0	0	0	0.21704	1	7283	7283		72.243	8.036	1	136550	+		32807	20772	22751	22825	33212	33212					0.04863932737566756
RFGTGAASLLQ	11	Unmodified	_RFGTGAASLLQ_					0	0	0			REV__KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant	REV__KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8095092773438	2	560.809105	1119.60366	1.275	0.00071504	-1.1637	-0.00065263	0.11129	6.2412E-05	560.8082014789484	23.843	0.762	23.843	23.484	24.246	0					25	15	4	0	0	0	0.11999	1	8150	8150		84.817	19.352	1	1015800	+		32808	20772	22751	22825	33213	33213					0.04863932737566756
RFHTLMVF	8	Unmodified	_RFHTLMVF_					0	0	0			REV__ENST00000370713.5_1_1:82372818-82372908:+|nuORF	REV__ENST00000370713.5_1_1:82372818-82372908:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.783447265625	2	525.781305	1049.54806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.049	1	41.049	40.549	41.549	0								0	0	0	1.7419	1	16141	16141		37.028	5.0736	1		+		32809	18639	22752	22826	33214	33214					0.025264280162446084
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7664489746094	2	498.766709	995.518865	2.9182	0.0014555	-2.5786	-0.0012861	0.3396	0.00016938	498.7650658098261	36.674	0.66584	36.674	36.297	36.963	0					34	13	4	0	0	0	0.026538	1	14274	14274		112.41	45.982	1	1286700			32810	6394	22753	22827	33215	33215					0.02092606991595858
RFKFPSVK	8	Unmodified	_RFKFPSVK_					0	0	0			REV__nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	REV__nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.8080139160156	2	504.803094	1007.59164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.572	1	23.572	23.072	24.072	0								0	0	0	1.7419	1	8140	8140		73.975	7.5455	1		+		32811	21193	22754	22828	33216	33216					0.08814360785049757
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.31689453125	2	562.316566	1122.61858	1.8546	0.0010429	-2.9554	-0.0016619	-1.1008	-0.000619	562.3159860477109	29.84	0.91074	29.84	29.553	30.464	0					37	19	3	0	0	0	0.28897	1	11067	11067		51.193	10.62	1	766760			32812	7196	22755	22829	33217	33217					0.06217424605551969
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.3165283203125	2	562.316566	1122.61858	-0.95994	-0.00053979	0.26245	0.00014758	-0.69749	-0.00039221	562.3170238245439	29.587	0.28313	29.587	29.443	29.726	0					12	7	2	0	0	0	0.39215	1	9992	9992		42.396	10.866	1	70020			32813	7196	22755	22829	33218	33218					0.06217424605551969
RFPAPRRR	8	Unmodified	_RFPAPRRR_					0	0	0			REV__nc|ENSG00000119408|Q9HC98-3|NEK6	REV__nc|ENSG00000119408|Q9HC98-3|NEK6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.31982421875	2	528.320309	1054.62606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.532	1	18.532	18.032	19.032	0								0	0	0	1.7419	1	4854	4854		31.955	1.4512	1		+		32814	20994	22756	22830	33219	33219					0.10093621716487178
RFPGCMKG	8	Unmodified	_RFPGCMKG_					0	0	0		PCK1|p.N346Qfs*29|1|0.24|ENSG00000124253|chr20:57564238-57564239|-/C|frameshift_variant;ENSG00000124253|ENST00000319441|PCK1	PCK1|p.N346Qfs*29|1|0.24|ENSG00000124253|chr20:57564238-57564239|-/C|frameshift_variant	PCK1|p.N346Qfs*29|1|0.24|ENSG00000124253|chr20:57564238-57564239|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.21966552734375	2	448.217483	894.420413	2.5554	0.0011454	0.60236	0.00026999	3.1578	0.0014154	448.2177318825965	45.211	0.16231	45.211	45.1	45.263	0					11	7	2	0	0	0	0.79882	1	18093	18093		19.36	0	1	68672			32815	3362	22757	22831	33220	33220					-0.031020358494288303
RFPPPHHH	8	Unmodified	_RFPPPHHH_					0	0	0			REV__PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant	REV__PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7631225585938	2	512.764835	1023.51512	0.068571	3.5161E-05	-2.7183	-0.0013938	-2.6497	-0.0013587	512.763432121014	32.499	0.21855	32.499	32.371	32.59	0					8	4	2	0	0	0	0.67475	1	12288	12288		37.028	6.5248	1	121410	+		32816	21368	22758	22832	33221	33221					0.004299820084156636
RFPSDAPSVY	10	Unmodified	_RFPSDAPSVY_					0	0	0			REV__ENST00000476304.5_1_7:100218482-100231271:-|nuORF	REV__ENST00000476304.5_1_7:100218482-100231271:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.7824096679688	2	569.780013	1137.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.692	1	36.692	36.192	37.192	0								0	0	0	0.34115	1	12028	12028		44.377	11.565	1		+		32817	19538	22759	22833	33222	33222					-0.017797489077111095
RFQTQFVVV	9	Unmodified	_RFQTQFVVV_					0	0	0			REV__SLC26A9|p.N501D|1|0.25|ENSG00000174502|chr1:205923609-205923609|T/C|missense_variant	REV__SLC26A9|p.N501D|1|0.25|ENSG00000174502|chr1:205923609-205923609|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.3173828125	2	562.316566	1122.61858	1.2712	0.00071479	-1.7768	-0.00099912	-0.50564	-0.00028433	562.3155245753051	29.568	0.15104	29.568	29.514	29.666	0					8	5	2	0	0	0	0.54267	1	9357	9357		27.882	0	1	49134	+		32818	16569	22760	22834	33223	33223					0.06217424605574706
RFQYPCGP	8	Unmodified	_RFQYPCGP_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.22772216796875	2	484.226362	966.438172	2.4478	0.0011853	0.13954	6.7567E-05	2.5874	0.0012529	484.2264453410551	23.31	0.21758	23.31	23.201	23.418	0					7	4	2	0	0	0	0.67475	1	7898	7898		37.028	3.1068	1	596520	+		32819	15737	22761	22835	33224	33224					-0.046389973229338466
RFRAVQIR	8	Unmodified	_RFRAVQIR_					0	0	0			REV__PSKH2|p.D147Efs*26|1|0.07|ENSG00000147613|chr8:86064376-86064377|-/AAATTTTAAT|frameshift_variant	REV__PSKH2|p.D147Efs*26|1|0.07|ENSG00000147613|chr8:86064376-86064377|-/AAATTTTAAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.2167663574219	3	349.217437	1044.63048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.24	1	17.24	16.74	17.74	0								0	0	0	1.7419	1	4285	4285		34.173	0	1		+		32820	15358	22762	22836	33225	33225					0.1099508613940543
RFSQDLPR	8	Unmodified	_RFSQDLPR_					0	0	0		nc|ENSG00000161010|Q6NTE8-3|MRNIP;ENSG00000161010|ENST00000292586|MRNIP;ENST00000521675.1_1_5:179268839-179271187:-|nuORF;ENST00000520150.5_1_5:179267832-179285817:-|nuORF;nc|ENSG00000161010|Q6NTE8-2|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7754211425781	2	509.775065	1017.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.302	1	38.302	37.802	38.802	0								0	0	0	1.7419	1	12500	12500		21.96	0	1				32821	5396	22763	22837	33226	33226					0.02751107877566028
RFSSKTVTV	9	Unmodified	_RFSSKTVTV_					0	0	0		CHST5|p.L35I|1|0.13|ENSG00000135702|chr16:75530282-75530282|G/T|missense_variant;ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5	CHST5|p.L35I|1|0.13|ENSG00000135702|chr16:75530282-75530282|G/T|missense_variant	CHST5|p.L35I|1|0.13|ENSG00000135702|chr16:75530282-75530282|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7933959960938	2	512.792924	1023.57129	0.48701	0.00024973	0.45531	0.00023348	0.94232	0.00048321	512.7932486521507	25.375	0.31713	25.375	25.171	25.488	0					12	7	2	0	0	0	0.48389	1	8059	8059		34.173	2.6427	1	111300			32822	541	22764	22838	33227	33227					0.060451453345763184
RFTLGSPLT	9	Unmodified	_RFTLGSPLT_					0	0	0		NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant;nc|ENSG00000072736|Q12968-5|NFATC3;nc|ENSG00000072736|Q12968-6|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF;NFATC3|p.G218Afs*38|1|0.32|ENSG00000072736|chr16:68122532-68122532|G/-|frameshift_variant	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2857360839844	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.722	1	40.722	40.222	41.222	0								0	0	0	0.16453	1	16191	16191		56.434	6.9922	1				32823	1498	22765	22839	33228	33228					0.054177603058633395
RFTTPGLKNLQ	11	Unmodified	_RFTTPGLKNLQ_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.5796203613281	3	425.5787	1273.71427	1.0533	0.00044827	0.98851	0.00042069	2.0418	0.00086896	425.57916049585674	20.285	0.26726	20.285	20.176	20.443	0					13	5	3	0	0	0	0.53842	1	6429	6429		43.419	43.419	1	1950900	+		32824	14733	22766	22840	33229	33229					0.08836152725803004
RFVGWGNKF	9	Unmodified	_RFVGWGNKF_					0	0	0			REV__ENST00000399668.6_1_15:40886537-40895155:+|nuORF	REV__ENST00000399668.6_1_15:40886537-40895155:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.797607421875	2	555.795801	1109.57705	1.8225	0.001013	0.49216	0.00027354	2.3147	0.0012865	555.7961685609285	38.197	0.91171	38.197	37.974	38.886	0					54	19	5	0	0	0	0.51817	1	15126	15126		30.504	30.504	1	3310500	+		32825	18935	22767	22841	33230	33230					0.026642886369018015
RFVLRALR	8	Unmodified	_RFVLRALR_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	344.2249450683594	3	344.225932	1029.65597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.41	1	25.41	24.91	25.91	0								0	0	0	1.7419	1	7644	7644		17.365	5.1581	1				32826	2524	22768	22842	33231	33231					0.14232560661844218
RFVTIFIQI	9	Unmodified	_RFVTIFIQI_					0	0	0			REV__OR52A1|p.F254Nfs*56|1|0.04|ENSG00000182070|chr11:5151610-5151611|-/ATGTT|frameshift_variant	REV__OR52A1|p.F254Nfs*56|1|0.04|ENSG00000182070|chr11:5151610-5151611|-/ATGTT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.5650939941406	3	379.565732	1135.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.688	1	28.688	28.188	29.188	0								0	0	0	0.35377	1	9273	9273		24.519	0	1		+		32827	16863	22769	22843	33232	33232					0.11295472162078113
RFYPSSAALV	10	Unmodified	_RFYPSSAALV_					0	0	0			REV__ZBTB37|p.I398Dfs*70|1|0.34|ENSG00000185278|chr1:173885799-173885800|-/G|frameshift_variant	REV__ZBTB37|p.I398Dfs*70|1|0.34|ENSG00000185278|chr1:173885799-173885800|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.8014526367188	2	555.800749	1109.58694	1.305	0.0007253	-0.72079	-0.00040061	0.58418	0.00032469	555.8005119232039	30.546	0.4007	30.546	30.251	30.652	0					25	15	2	0	0	0	0.49411	1	9710	9710		45.972	3.5761	1	98481	+		32828	17017	22770	22844	33233	33233					0.03653431851603273
RGAADGPHAAV	11	Unmodified	_RGAADGPHAAV_					0	0	0			REV__ENST00000469090.5_1_17:27942519-27943125:-|nuORF	REV__ENST00000469090.5_1_17:27942519-27943125:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2647399902344	2	511.262322	1020.51009	3.0848	0.0015771	0.29844	0.00015258	3.3832	0.0017297	511.2625551252127	11.778	0.13283	11.778	11.698	11.831	0					15	6	3	0	0	0	0.69733	1	2340	2340		27.882	2.3082	1	146970	+		32829	19448	22771	22845	33234	33234					0.0006563335513192214
RGAAFMAF	8	Unmodified	_RGAAFMAF_					0	0	0			REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.7183532714844	2	435.718173	869.421793	-0.27439	-0.00011956	0.13604	5.9274E-05	-0.13835	-6.0282E-05	435.71821760407977	33.56	0.34517	33.56	33.485	33.83	0					21	13	2	0	0	0	0.6282	1	10919	10919		44.531	20.027	1	433350	+		32830	22015	22772	22846	33235	33235					-0.01814078489030635
RGAAFMAF	8	Unmodified	_RGAAFMAF_					0	0	0			REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.71771240234375	2	435.718173	869.421793	-0.4206	-0.00018326	-0.06157	-2.6827E-05	-0.48217	-0.00021009	435.71833688400613	33.796	0.72605	33.796	33.687	34.413	0					45	19	3	0	0	0	0.6282	1	12530	12530		44.531	9.3304	1	2125200	+		32831	22015	22772	22846	33236	33236					-0.01814078489030635
RGAAFMAF	8	Unmodified	_RGAAFMAF_					0	0	0			REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.7181091308594	2	435.718173	869.421793	0.35256	0.00015361	-0.70982	-0.00030928	-0.35726	-0.00015567	435.71786100991795	33.793	0.86239	33.793	33.667	34.53	0					45	21	3	0	0	0	0.61433	1	12949	12949		46.766	46.766	1	3328300	+		32832	22015	22772	22846	33237	33237					-0.01814078489030635
RGAAGRGG	8	Unmodified	_RGAAGRGG_					0	0	0		ENST00000506485.1_1_5:114937968-114938790:+|nuORF;ENST00000517535.5_1_8:22422841-22423627:+|nuORF	ENST00000506485.1_1_5:114937968-114938790:+|nuORF	ENST00000506485.1_1_5:114937968-114938790:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.19403076171875	2	351.193711	700.372869	1.4582	0.00051212	-2.3685	-0.00083181	-0.9103	-0.00031969	351.19332211665005	47.156	0.19355	47.156	47.084	47.278	0					15	8	3	0	0	0	0.78216	1	18826	18826		8.8223	0	1	153640			32833	10195	22773	22847	33238	33238					0.010697692662347436
RGAATGRRL	9	Unmodified	_RGAATGRRL_					0	0	0			REV__ENST00000504183.1_1_5:71403304-71411655:+|nuORF	REV__ENST00000504183.1_1_5:71403304-71411655:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.28857421875	2	479.288674	956.562795	0.90169	0.00043217	-1.0132	-0.00048562	-0.11152	-5.345E-05	479.2882052896193	13.663	0.16122	13.663	13.605	13.766	0					5	3	2	0	0	0	0.48389	1	3238	3238		34.173	0	1	253430	+		32834	19825	22774	22848	33239	33239					0.08277636208606509
RGADGSSTPLQ	11	Unmodified	_RGADGSSTPLQ_					0	0	0			REV__DCUN1D3|p.D149*|1|0.27|ENSG00000188215|chr16:20860356-20860357|-/A|frameshift_variant	REV__DCUN1D3|p.D149*|1|0.27|ENSG00000188215|chr16:20860356-20860357|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.5171813964844	3	363.515877	1087.5258	3.1332	0.001139	0.38818	0.00014111	3.5214	0.0012801	363.5160195048126	24.793	0.70285	24.793	24.595	25.298	0					40	14	5	0	0	0	0.21704	1	8585	8585		80.737	9.9209	1	12263000	+		32835	12682	22775	22849	33240	33240					-0.014461249184705594
RGAGGRRR	8	Unmodified	_RGAGGRRR_					0	0	0		ENST00000609111.1_1_10:88727834-88728308:-|nuORF;ENSG00000178919|ENST00000375123|FOXE1	ENST00000609111.1_1_10:88727834-88728308:-|nuORF	ENST00000609111.1_1_10:88727834-88728308:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2668762207031	2	443.265533	884.516514	2.6067	0.0011555	0.29313	0.00012993	2.8998	0.0012854	443.265563596752	49.711	0.32671	49.711	49.635	49.961	0					22	14	2	0	0	0	0.79882	1	19635	19635		19.36	0	1	122740			32836	6736	22776	22850	33241	33241					0.06963616097175418
RGAKAGVSP	9	Unmodified	_RGAKAGVSP_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7453308105469	2	421.745776	841.477	0.85141	0.00035908	-1.5663	-0.00066059	-0.7149	-0.0003015	421.74510893355665	13.644	0.328	13.644	13.376	13.704	0					12	7	3	0	0	0	0.2873	1	3381	3381		51.335	3.6781	1	229170	+		32837	13128	22777	22851	33242	33242					0.04992051303099743
RGAPPIRDK	9	Unmodified	_RGAPPIRDK_					0	0	0		B3GNT5|p.F349Lfs*8|1|0.12|ENSG00000176597|chr3:183270839-183270839|T/-|frameshift_variant;ENSG00000176597|ENST00000326505|B3GNT5	B3GNT5|p.F349Lfs*8|1|0.12|ENSG00000176597|chr3:183270839-183270839|T/-|frameshift_variant	B3GNT5|p.F349Lfs*8|1|0.12|ENSG00000176597|chr3:183270839-183270839|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.2015075683594	3	337.201564	1008.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.133	1	15.133	14.633	15.633	0								0	0	0	0.18645	1	3922	3922		59.931	0	1				32838	269	22778	22852	33243	33243					0.0789138714856108
RGAPVSVYQ	9	Unmodified	_RGAPVSVYQ_					0	0	0		nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM;PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant;PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	nc|ENSG00000173482|P28827|PTPRM	nc|ENSG00000173482|P28827|PTPRM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.26513671875	2	488.764166	975.513779	3.5079	0.0017145	-2.5853	-0.0012636	0.92253	0.0004509	488.7631538481284	16.189	0.15192	16.189	16.104	16.256	0					10	5	3	0	0	0	0.51991	1	3822	3822		30.318	4.7437	1	101330			32839	6430	22779	22853	33244	33244					0.02504303129001073
RGATRPRK	8	Unmodified	_RGATRPRK_					0	0	0			REV__PLEKHG6|p.T599Hfs*71|1|0.34|ENSG00000008323|chr12:6327376-6327377|-/A|frameshift_variant	REV__PLEKHG6|p.T599Hfs*71|1|0.34|ENSG00000008323|chr12:6327376-6327377|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2923583984375	2	471.291217	940.567881	2.4921	0.0011745	-0.0082385	-3.8827E-06	2.4839	0.0011706	471.29121779852704	17.355	0.2049	17.355	17.259	17.464	0					7	4	2	0	0	0	0.49216	1	5002	5002		60.972	9.6365	1	573800	+		32840	21387	22780	22854	33245	33245					0.09521940071226709
RGAVGPPA	8	Unmodified	_RGAVGPPA_					0	0	0		ENST00000486996.5_1_20:30450513-30457513:-|nuORF	ENST00000486996.5_1_20:30450513-30457513:-|nuORF	ENST00000486996.5_1_20:30450513-30457513:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.70892333984375	2	362.708663	723.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.287	1	19.287	18.787	19.787	0								0	0	0	1.7419	1	5195	5195		20.482	0	1				32841	10030	22781	22855	33246	33246					0.030007082115730555
RGCDILIVY	9	Unmodified	_RGCDILIVY_					0	0	0		PIK3AP1|p.P531Cfs*18|1|0.25|ENSG00000155629|chr10:96626785-96626786|GG/-|frameshift_variant;PIK3AP1|p.S562Kfs*34|1|0.4|ENSG00000155629|chr10:96623522-96623523|-/T|frameshift_variant;ENSG00000155629|ENST00000339364|PIK3AP1	PIK3AP1|p.P531Cfs*18|1|0.25|ENSG00000155629|chr10:96626785-96626786|GG/-|frameshift_variant	PIK3AP1|p.P531Cfs*18|1|0.25|ENSG00000155629|chr10:96626785-96626786|GG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7847900390625	2	526.283877	1050.5532	1.6278	0.00085671	-1.1844	-0.00062334	0.44342	0.00023336	526.2835624902618	43.519	0.65063	43.519	43.283	43.934	0					27	16	3	0	0	0	0.54267	1	17478	17478		27.882	3.3782	1	87284			32842	5132	22782	22856	33247	33247					0.02994687088221326
RGCGLLWVF	9	Unmodified	_RGCGLLWVF_					0	0	0		ENST00000328300.10_2_X:107683240-107783007:+|nuORF	ENST00000328300.10_2_X:107683240-107783007:+|nuORF	ENST00000328300.10_2_X:107683240-107783007:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7828979492188	2	525.781305	1049.54806	1.9414	0.0010208	0.98524	0.00051802	2.9267	0.0015388	525.7817676630675	34.617	1.049	34.617	34.493	35.542	0					35	27	2	0	0	0	0.39123	1	12979	12979		42.474	3.6683	1	167900			32843	8660	22783	22857	33248	33248					0.02526428016221871
RGDFCIEVGK	10	Unmodified	_RGDFCIEVGK_					0	0	0		ENST00000564252.1_1_16:1820880-1821211:-|nuORF;ENSG00000103024|ENST00000219302|NME3	ENST00000564252.1_1_16:1820880-1821211:-|nuORF	ENST00000564252.1_1_16:1820880-1821211:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2813110351562	2	562.281866	1122.54918	1.7867	0.0010046	-2.326	-0.0013079	-0.53939	-0.00030329	562.2805252302353	37.927	0.28939	37.927	37.767	38.056	0					20	12	3	0	0	0	0.66185	1	14388	14388		26.693	2.4902	1	105180			32844	2206	22784	22858	33249	33249					-0.007194024055024784
RGDISEPK	8	Unmodified	_RGDISEPK_					0	0	0		ENST00000518409.1_1_5:133640182-133644414:-|nuORF;ENST00000520693.5_1_5:133622066-133644414:-|nuORF;nc|ENSG00000273345|Q8IVW4-2|CDKL3;ENST00000520515.5_1_5:133541561-133657575:-|nuORF;ENSG00000006837|ENST00000265334|CDKL3	ENST00000518409.1_1_5:133640182-133644414:-|nuORF	ENST00000518409.1_1_5:133640182-133644414:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2403259277344	2	451.240524	900.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.965	1	12.965	12.465	13.465	0								0	0	0	1.7419	1	3046	3046		17.365	0	1				32845	991	22785	22859	33250	33250					0.012280238579933211
RGDLPWNLQR	10	Unmodified	_RGDLPWNLQR_					0	0	0		ENST00000592887.1_1_17:76993904-77002146:-|nuORF	ENST00000592887.1_1_17:76993904-77002146:-|nuORF	ENST00000592887.1_1_17:76993904-77002146:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	627.8388061523438	2	627.838728	1253.6629	-2.1499	-0.0013498	1.3024	0.00081772	-0.84751	-0.0005321	627.8395650670478	33.27	0.24397	33.27	33.139	33.382	0					21	7	4	0	0	0	0.28036	1	11638	11638		69.628	2.6657	1	603710			32846	10975	22786	22860	33251	33251					0.046218287517376666
RGEAAAAAV	9	Unmodified	_RGEAAAAAV_					0	0	0		ENST00000373036.4_1_1:38323346-38325272:-|nuORF	ENST00000373036.4_1_1:38323346-38325272:-|nuORF	ENST00000373036.4_1_1:38323346-38325272:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.22210693359375	2	408.222134	814.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.185	1	20.185	19.685	20.685	0								0	0	0	0.3304	1	6219	6219		29.15	0	1				32847	8986	22787	22861	33252	33252					0.01507772032084631
RGEGGRLGTGA	11	Unmodified	_RGEGGRLGTGA_					0	0	0			REV__ENST00000483155.5_1_9:79007484-79008822:-|nuORF	REV__ENST00000483155.5_1_9:79007484-79008822:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7763671875	2	515.773054	1029.53155	1.5124	0.00078008	2.2855	0.0011788	3.7979	0.0019589	515.7742652197843	15.537	0.70241	15.537	15.146	15.849	0					27	14	3	0	0	0	0.25663	1	4180	4180		67.494	2.0283	1	897810	+		32848	19619	22788	22862	33253	33253					0.017970183838542653
RGEKVEAK	8	Unmodified	_RGEKVEAK_					0	0	0		ENST00000593011.5_1_1:152140679-152287408:+|nuORF	ENST00000593011.5_1_1:152140679-152287408:+|nuORF	ENST00000593011.5_1_1:152140679-152287408:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7644348144531	2	458.764166	915.513779	0.68478	0.00031415	-0.42475	-0.00019486	0.26002	0.00011929	458.7639216703578	13.618	0.13509	13.618	13.54	13.675	0					10	7	2	0	0	0	0.49216	1	2686	2686		60.972	9.6365	1	71890			32849	10980	22789	22863	33254	33254					0.052643031289903774
RGERSCYR	8	Unmodified	_RGERSCYR_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.749755859375	2	513.748524	1025.4825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.448	1	25.448	24.948	25.948	0								0	0	0	1.7419	1	8697	8697		44.117	5.3107	1				32850	3258	22790	22864	33255	33255					-0.029225931767768998
RGESKVQIPS	10	Unmodified	_RGESKVQIPS_					0	0	0		ENST00000592670.5_1_17:40912585-40912720:-|nuORF	ENST00000592670.5_1_17:40912585-40912720:-|nuORF	ENST00000592670.5_1_17:40912585-40912720:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.806884765625	2	550.806562	1099.59857	1.1518	0.00063442	-0.429	-0.0002363	0.7228	0.00039812	550.806299888221	22.479	0.32991	22.479	22.376	22.706	0					14	7	3	0	0	0	0.23612	1	6690	6690		75.043	5.4157	1	587560			32851	10972	22791	22865	33256	33256					0.052756288749378655
RGESLLCVAP	10	Unmodified	_RGESLLCVAP_					0	0	0		ZBTB14|p.K387Sfs*18|1|0.29|ENSG00000198081|chr18:5291048-5291048|T/-|frameshift_variant	ZBTB14|p.K387Sfs*18|1|0.29|ENSG00000198081|chr18:5291048-5291048|T/-|frameshift_variant	ZBTB14|p.K387Sfs*18|1|0.29|ENSG00000198081|chr18:5291048-5291048|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7777099609375	2	522.778959	1043.54336	-1.2959	-0.00067749	-1.0849	-0.00056714	-2.3808	-0.0012446	522.7783837491404	35.246	0.23661	35.246	35.18	35.417	0					19	8	3	0	0	0	0.64178	1	12535	12535		29.15	1.2673	1	268290			32852	23125	22792	22866	33257	33257					0.023334990828288937
RGEVHVRQ	8	Unmodified	_RGEVHVRQ_					0	0	0			REV__ENSG00000062370|ENST00000354340|ZNF112	REV__ENSG00000062370|ENST00000354340|ZNF112	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.77069091796875	2	490.772857	979.531161	-1.3093	-0.00064258	-3.4702	-0.0017031	-4.7795	-0.0023457	490.77137290388805	14.879	0.13027	14.879	14.814	14.945	0					13	5	3	0	0	0	0.53424	1	3291	3291		45.952	0	1	534630	+		32853	13090	22793	22867	33258	33258					0.040576434546551354
RGFHGTNKF	9	Unmodified	_RGFHGTNKF_					0	0	0		tr|U7SH01|U7SH01_FUSNUDUF3990domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02187PE=4SV=1	tr|U7SH01|U7SH01_FUSNUDUF3990domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02187PE=4SV=1	tr|U7SH01|U7SH01_FUSNUDUF3990domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02187PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2799682617188	2	532.275232	1062.53591	0.12477	6.6411E-05	2.8735	0.0015295	2.9983	0.0015959	532.2767052167087	31.549	0.57946	31.549	31.28	31.86	0					31	14	3	0	0	0	0.21263	1	11476	11476		60.118	3.6845	1	312760			32854	22589	22794	22868	33259	33259					0.007145275973925891
RGFPPYLPP	9	Unmodified	_RGFPPYLPP_					0	0	0		ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2	ENSG00000150527|ENST00000640607|MIA2	ENSG00000150527|ENST00000640607|MIA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2853393554688	2	522.287277	1042.56	0.39739	0.00020755	-4.0567	-0.0021188	-3.6593	-0.0019112	522.2856179835335	24.977	0.099699	24.977	24.904	25.004	0					6	3	2	0	0	0	0.42902	1	7704	7704		24.203	0	1	61504			32855	4926	22795	22869	33260	33260					0.04042368031082333
RGFSHRPL	8	Unmodified	_RGFSHRPL_					0	0	0			REV__nc|ENSG00000145864|P47870-1|GABRB2	REV__nc|ENSG00000145864|P47870-1|GABRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2713623046875	2	485.272493	968.530432	-1.2369	-0.00060023	-0.59126	-0.00028692	-1.8282	-0.00088715	485.27222767991015	31.63	0.31938	31.63	31.477	31.796	0					31	12	3	0	0	0	0.65148	1	10457	10457		40.778	10.275	1	438230	+		32856	15293	22796	22870	33261	33261					0.04490848805608039
RGGCPCPRLF	10	Carbamidomethyl (C)	_RGGC(Carbamidomethyl (C))PCPRLF_	RGGC(0.5)PC(0.5)PRLF		RGGC(0)PC(0)PRLF		0	1	0		ENST00000529833.5_3_8:144766707-144771377:+|nuORF	ENST00000529833.5_3_8:144766707-144771377:+|nuORF	ENST00000529833.5_3_8:144766707-144771377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.7859497070312	2	581.784053	1161.55355	3.2363	0.0018828	0.49149	0.00028594	3.7278	0.0021687	581.7843602267128	31.889	1.6095	31.889	31.437	33.046	0					86	32	4	0	0	0	0.44469	1	12030	12030		51.335	10.557	2	1354700			32857	10416	22797	22871	33262	33262	419;420				-0.020762164636153102
RGGDRARL	8	Unmodified	_RGGDRARL_					0	0	0		ENST00000303052.12_2_15:64592864-64648248:-|nuORF	ENST00000303052.12_2_15:64592864-64648248:-|nuORF	ENST00000303052.12_2_15:64592864-64648248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7606201171875	2	450.759749	899.504946	2.5353	0.0011428	-0.60244	-0.00027156	1.9328	0.00087124	450.7594569006626	45.034	0.26799	45.034	44.907	45.175	0					14	11	2	0	0	0	0.67394	1	18036	18036		37.159	0	1	82417			32858	8503	22798	22872	33263	33263					0.05117374283179288
RGGGGASN	8	Unmodified	_RGGGGASN_					0	0	0			REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant	REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.1624450683594	2	338.162077	674.3096	1.4834	0.00050162	0.13068	4.4192E-05	1.614	0.00054581	338.16206170715367	44.011	0.40643	44.011	43.778	44.184	0					33	21	2	0	0	0	0.78122	1	17156	17156		8.2313	0.54101	1	246140	+		32859	12666	22799	22873	33264	33264					-0.040582162416740175
RGGGGGVF	8	Unmodified	_RGGGGGVF_					0	0	0			REV__ENST00000441006.5_1_22:17517965-17528257:+|nuORF	REV__ENST00000441006.5_1_22:17517965-17528257:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.6845703125	2	353.685188	705.355822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.072	1	15.072	14.572	15.572	0								0	0	0	1.7419	1	3814	3814		5.0869	0	1		+		32860	19234	22800	22874	33265	33265					-0.008641513395787115
RGGGGRRLLQ	10	Unmodified	_RGGGGRRLLQ_					0	0	0		ENST00000460939.5_1_11:62369776-62370417:-|nuORF	ENST00000460939.5_1_11:62369776-62370417:-|nuORF	ENST00000460939.5_1_11:62369776-62370417:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.2169494628906	3	357.216096	1068.62646	1.4347	0.0005125	0.96038	0.00034306	2.3951	0.00085556	357.2164760746465	23.075	0.41766	23.075	22.894	23.312	0					22	8	4	0	0	0	0.73511	1	7877	7877		16.007	0	1	2035800			32861	9727	22801	22875	33266	33266					0.09488996645700354
RGGGPVEHYHL	11	Unmodified	_RGGGPVEHYHL_					0	0	0		nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS	nc|ENSG00000159267|P50747|HLCS	nc|ENSG00000159267|P50747|HLCS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	611.3090209960938	2	611.309803	1220.60505	0.16064	9.8202E-05	-1.4347	-0.00087702	-1.274	-0.00077882	611.8103114672671	28.931	0.21056	28.931	28.814	29.024	0					13	7	2	0	0	0	0.78498	1	9080	9080		18.262	0.79408	1	73980			32862	5306	22802	22876	33267	33267					0.0035756682632381853
RGGMSRGGRG	10	Unmodified	_RGGMSRGGRG_					0	0	0		ENST00000479135.5_1_22:29673993-29684776:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;EWSR1|p.P622Lfs*4|1|0.39|ENSG00000182944|chr22:29299775-29299775|G/-|frameshift_variant;EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant;EWSR1|p.M605Tfs*41|1|0.09|ENSG00000182944|chr22:29299733-29299734|-/CCTC|frameshift_variant;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1;ENST00000400979.2_1_1:166244929-166246012:-|nuORF	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2655029296875	2	495.754141	989.493729	-0.76327	-0.0003784	0.45289	0.00022452	-0.31039	-0.00015388	495.7541352392321	19.701	0.1648	19.701	19.593	19.758	0					5	3	2	0	0	0	0.31613	1	6260	6260		65.465	0	1	306900			32863	6928	22803	22877	33268	33268					-0.0014377108258258886
RGGQRFRA	8	Unmodified	_RGGQRFRA_					0	0	0			REV__ENST00000426597.2_1_1:32705501-32706166:-|nuORF	REV__ENST00000426597.2_1_1:32705501-32706166:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2679138183594	2	474.267742	946.52093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.63	1	11.63	11.13	12.13	0								0	0	0	1.7419	1	2297	2297		13.775	0	1		+		32864	19103	22804	22878	33269	33269					0.04553080520088315
RGGRKGGP	8	Unmodified	_RGGRKGGP_					0	0	0		nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	nc|ENSG00000167962|Q86UK7-4|ZNF598	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.73150634765625	2	392.730461	783.446369	0.12609	4.9519E-05	2.1746	0.00085404	2.3007	0.00090356	392.7316513845617	19.684	0.81238	19.684	19.132	19.944	0					41	16	3	0	0	0	0.65276	1	6206	6206		40.573	1.7665	1	599880			32865	6039	22805	22879	33270	33270					0.045983177087123295
RGHAPPAAAPG	11	Unmodified	_RGHAPPAAAPG_					0	0	0		ENSG00000152128|ENST00000281924|TMEM163	ENSG00000152128|ENST00000281924|TMEM163	ENSG00000152128|ENST00000281924|TMEM163	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2661437988281	2	501.267407	1000.52026	-2.1106	-0.001058	0.94445	0.00047342	-1.1662	-0.00058457	501.2678327099204	19.351	0.49147	19.351	18.958	19.45	0					20	11	2	0	0	0	0.50161	1	5192	5192		44.117	3.3386	1	269130			32866	4998	22806	22880	33271	33271					0.020022410803676394
RGHGCEDM	8	Unmodified	_RGHGCEDM_					0	0	0			REV__ENSG00000185518|ENST00000394232|SV2B	REV__ENSG00000185518|ENST00000394232|SV2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.67498779296875	2	452.673637	903.33272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.966	1	27.966	27.466	28.466	0								0	0	0	1.7419	1	10192	10192		19.36	3.7238	1		+		32867	17033	22807	22881	33272	33272					-0.12281281510865938
RGHILFESE	9	Unmodified	_RGHILFESE_					0	0	0		nc|ENSG00000113971|Q7Z494-4|NPHP3	nc|ENSG00000113971|Q7Z494-4|NPHP3	nc|ENSG00000113971|Q7Z494-4|NPHP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.2537231445312	2	544.28018	1086.54581	0.44634	0.00024293	0.87278	0.00047504	1.3191	0.00071797	544.2805522868175	22.607	0.22457	22.607	22.505	22.729	0					12	7	3	0	0	0	0.54081	1	6673	6673		20.947	7.9877	1	109150			32868	11486	22808	22882	33273	33273					0.005996708121529082
RGHPPGAQPR	10	Unmodified	_RGHPPGAQPR_					0	0	0		nc|ENSG00000130182|Q96SZ4-3|ZSCAN10	nc|ENSG00000130182|Q96SZ4-3|ZSCAN10	nc|ENSG00000130182|Q96SZ4-3|ZSCAN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7910766601562	2	536.791581	1071.56861	0.29236	0.00015694	-2.3536	-0.0012634	-2.0612	-0.0011065	536.7902553601982	37.27	0.17355	37.27	37.213	37.387	0					9	5	2	0	0	0	0.61187	1	14586	14586		32.812	2.4947	1	62370			32869	11519	22809	22883	33274	33274					0.03568734720261091
RGILAKIEGQ	10	Unmodified	_RGILAKIEGQ_					0	0	0		ENST00000404600.2_1_6:1514778-1515111:-|nuORF	ENST00000404600.2_1_6:1514778-1515111:-|nuORF	ENST00000404600.2_1_6:1514778-1515111:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.825927734375	2	542.827298	1083.64004	1.1435	0.0006207	-0.88548	-0.00048066	0.25798	0.00014004	543.3282084034067	24.229	0.088743	24.229	24.187	24.275	0					5	3	2	0	0	0	0.536	1	7137	7137		41.427	3.6151	1	43320			32870	9270	22810	22884	33275	33275					0.10156809634281672
RGIMPFPTEE	10	Unmodified	_RGIMPFPTEE_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7916870117188	2	588.789524	1175.56449	3.1863	0.0018761	0.20474	0.00012055	3.391	0.0019966	588.7898104466569	42.106	0.74924	42.106	41.872	42.621	0					52	20	5	0	0	0	0.4287	1	16914	16914		58.782	28.464	1	829400			32871	4478	22811	22885	33276	33276					-0.016265356083067672
RGKGRGPA	8	Unmodified	_RGKGRGPA_					0	0	0			REV__ENST00000574268.1_1_17:4710512-4711565:+|nuORF	REV__ENST00000574268.1_1_17:4710512-4711565:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.73828125	2	399.738286	797.462019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.752	1	43.752	43.252	44.252	0								0	0	0	1.7419	1	17090	17090		1.4648	0	1		+		32872	20403	22812	22886	33277	33277					0.05518604225744639
RGKLGSIP	8	Unmodified	_RGKLGSIP_					0	0	0			REV__ENST00000546253.5_1_11:62649261-62650084:+|nuORF	REV__ENST00000546253.5_1_11:62649261-62650084:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.25848388671875	2	414.25852	826.502486	0.98887	0.00040965	-1.1888	-0.00049245	-0.19989	-8.2808E-05	414.2579991583347	13.337	0.42929	13.337	13.242	13.671	0					14	9	3	0	0	0	0.76283	1	3082	3082		25.45	0	1	275120	+		32873	20115	22813	22887	33278	33278					0.08229525825504425
RGKVYNIR	8	Unmodified	_RGKVYNIR_					0	0	0		tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.3011169433594	2	503.30125	1004.58795	-0.064771	-3.2599E-05	0.037216	1.8731E-05	-0.027554	-1.3868E-05	503.3012335670241	19.255	0.41384	19.255	19.155	19.569	0					13	9	2	0	0	0	0.64144	1	5768	5768		40.573	6.4001	1	2093100			32874	22948	22814	22888	33279	33279					0.08583691011176597
RGLAPRAGE	9	Unmodified	_RGLAPRAGE_					0	0	0			REV__ENST00000304076.6_1_19:6772726-6772816:+|nuORF	REV__ENST00000304076.6_1_19:6772726-6772816:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7616271972656	2	463.761958	925.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.295	1	18.295	17.795	18.795	0								0	0	0	0.31838	1	5590	5590		31.53	2.3803	1		+		32875	18228	22815	22889	33280	33280					0.04362838706083494
RGLCAAPREE	10	Unmodified	_RGLCAAPREE_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant;CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant;CDK5RAP2|p.E454Kfs*11|2|0.31|ENSG00000136861|chr9:120491430-120491433|TCTT/-|frameshift_variant	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.9443359375	2	551.277115	1100.53968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.746	1	25.746	25.246	26.246	0								0	0	0	0.4162	1	7781	7781		25.574	3.6142	1				32876	4119	22816	22890	33281	33281					-0.006571706910335706
RGLERFAENID	11	Unmodified	_RGLERFAENID_					0	0	0			REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	660.3362426757812	2	660.338758	1318.66296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.524	1	34.524	34.024	35.024	0								0	0	0	0.45674	1	12226	12226		14.694	2.487	1		+		32877	20937	22817	22891	33282	33282					0.01637783961086825
RGLGGAGPSLP	11	Unmodified	_RGLGGAGPSLP_					0	0	0			REV__ENST00000374089.5_1_1:27425314-27425992:-|nuORF	REV__ENST00000374089.5_1_1:27425314-27425992:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2776184082031	2	491.277441	980.540328	-0.061955	-3.0437E-05	-0.098817	-4.8547E-05	-0.16077	-7.8984E-05	491.2774391118025	28.555	0.34544	28.555	28.362	28.708	0					23	14	2	0	0	0	0.60656	1	8919	8919		36.447	6.129	1	117010	+		32878	18691	22818	22892	33283	33283					0.049279920203161964
RGLHSLLL	8	Unmodified	_RGLHSLLL_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.7873840332031	2	454.787444	907.560336	-2.6275	-0.0011949	1.8948	0.00086175	-0.73261	-0.00033318	454.7883927138028	27.934	0.63709	27.934	27.688	28.325	0					21	15	2	0	0	0	0.7126	1	9125	9125		31.955	7.7521	1	143000	+		32879	17362	22819	22893	33284	33284					0.10285787750956388
RGLLPLYTE	9	Unmodified	_RGLLPLYTE_					0	0	0			REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.80810546875	2	531.303124	1060.5917	3.4236	0.001819	-2.2557	-0.0011985	1.1679	0.00062051	531.3015463482984	46.985	0.35872	46.985	46.827	47.186	0					31	16	3	0	0	0	0.50461	1	18732	18732		31.955	2.8053	1	293760	+		32880	19961	22820	22894	33285	33285					0.06382315994369492
RGLLRWME	8	Unmodified	_RGLLRWME_					0	0	0			REV__TRMT10C|p.L180Yfs*10|1|0.3|ENSG00000174173|chr3:101565316-101565316|T/-|frameshift_variant	REV__TRMT10C|p.L180Yfs*10|1|0.3|ENSG00000174173|chr3:101565316-101565316|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.28759765625	2	530.789661	1059.56477	1.7248	0.00091551	-2.2377	-0.0011877	-0.51285	-0.00027222	531.2884302474545	38.161	0.46246	38.161	37.931	38.393	0					25	13	3	0	0	0	0.67394	1	14948	14948		37.159	2.9866	1	219960	+		32881	16550	22821	22895	33286	33286					0.03736928902185355
RGLPEKKV	8	Unmodified	_RGLPEKKV_					0	0	0			REV__ENSG00000204103|ENST00000373313|MAFB	REV__ENSG00000204103|ENST00000373313|MAFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7923278808594	2	463.792727	925.5709	-0.72451	-0.00033602	-0.0082591	-3.8305E-06	-0.73277	-0.00033985	463.7926721457194	28.229	0.20294	28.229	28.15	28.353	0					11	7	2	0	0	0	0.78142	1	9063	9063		23.042	0	1	139730	+		32882	17466	22822	22896	33287	33287					0.1051377040537318
RGLRNTAAR	9	Unmodified	_RGLRNTAAR_					0	0	0		nc|ENSG00000283632|Q2M3D2|EXOC3L2;ENSG00000283632|ENST00000413988|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.86968994140625	3	338.868696	1013.58426	3.0185	0.0010229	-0.14849	-5.0317E-05	2.87	0.00097255	338.8686746647858	15.289	0.26725	15.289	15.178	15.445	0					12	5	4	0	0	0	0.5879	1	4007	4007		17.468	17.468	1	3475100			32883	8133	22823	22897	33288	33288					0.07801021237310124
RGLVEAPDPP	10	Unmodified	_RGLVEAPDPP_					0	0	0			REV__ENST00000395784.1_1_5:96272371-96272563:+|nuORF	REV__ENST00000395784.1_1_5:96272371-96272563:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7817993164062	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.761	1	48.761	48.261	49.261	0								0	0	0	0.4201	1	19355	19355		21.96	0	1		+		32884	18885	22824	22898	33289	33289					0.027765549548803392
RGMLAQRAAE	10	Unmodified	_RGMLAQRAAE_					0	0	0			REV__ENSG00000155530|ENST00000285928|LRGUK	REV__ENSG00000155530|ENST00000285928|LRGUK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7933959960938	2	551.792932	1101.57131	0.73783	0.00040713	0.088055	4.8588E-05	0.82588	0.00045572	551.7930836258191	22.897	0.16727	22.897	22.789	22.956	0					5	3	2	0	0	0	0.37692	1	7699	7699		58.782	0	1	281650	+		32885	15600	22825	22899	33290	33290					0.02458822062908439
RGNILNLN	8	Unmodified	_RGNILNLN_					0	0	0		nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;ENST00000526226.1_1_11:49207215-49208312:-|nuORF;FOLH1|p.S338Yfs*13|1|0.37|ENSG00000086205|chr11:49175866-49175867|AA/-|frameshift_variant;FOLH1|p.S501Vfs*12|1|0.15|ENSG00000086205|chr11:49157983-49157983|T/-|frameshift_variant;FOLH1|p.K499Ifs*16|1|0.06|ENSG00000086205|chr11:49157988-49157989|-/GAAAA|frameshift_variant;FOLH1|p.S501Kfs*20|1|0.27|ENSG00000086205|chr11:49157982-49157983|-/T|frameshift_variant;nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1	nc|ENSG00000086205|Q04609-9|FOLH1	nc|ENSG00000086205|Q04609-9|FOLH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2480773925781	2	457.264333	912.514114	0.72177	0.00033004	-1.0944	-0.00050043	-0.37263	-0.00017039	457.26399440039035	15.357	0.25471	15.357	15.18	15.434	0					10	5	2	0	0	0	0.70055	1	4136	4136		33.516	0	1	99585			32886	11443	22826	22900	33291	33291					0.05435722848835667
RGNRGPAK	8	Unmodified	_RGNRGPAK_					0	0	0			REV__ENST00000378116.8_1_10:15254933-15255023:-|nuORF	REV__ENST00000378116.8_1_10:15254933-15255023:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.250244140625	2	428.249018	854.483482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.202	1	27.202	26.702	27.702	0								0	0	0	1.7419	1	9828	9828		33.516	1.5607	1		+		32887	18742	22827	22901	33292	33292					0.05041989254459622
RGPELDGPG	9	Unmodified	_RGPELDGPG_					0	0	0			REV__ENST00000468655.1_1_19:49994004-49994437:+|nuORF	REV__ENST00000468655.1_1_19:49994004-49994437:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.22467041015625	2	449.224874	896.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.669	1	15.669	15.169	16.169	0								0	0	0	0.35507	1	4181	4181		24.203	2.2429	1		+		32888	19444	22828	22902	33293	33293					-0.017165491760920304
RGPGRANPVA	10	Unmodified	_RGPGRANPVA_					0	0	0			REV__FBXO41|p.G368V|1|0.51|ENSG00000163013|chr2:73266485-73266485|C/A|missense_variant	REV__FBXO41|p.G368V|1|0.51|ENSG00000163013|chr2:73266485-73266485|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.1883544921875	3	332.189547	993.546811	-0.7026	-0.0002334	-2.4438	-0.00081181	-3.1464	-0.0010452	332.18862863135405	32.916	0.23021	32.916	32.727	32.957	0					14	8	2	0	0	0	0.70274	1	11017	11017		21.686	5.2126	1	71359	+		32889	20669	22829	22903	33294	33294					0.049779299716988135
RGPPGLAGAPG	11	Unmodified	_RGPPGLAGAPG_					0	0	0		COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant;nc|ENSG00000168542|P02461-2|COL3A1;COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1	COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2651062011719	2	475.264333	948.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.134	1	38.134	37.634	38.634	0								0	0	0	0.45674	1	12448	12448		16.473	0.83134	1				32890	607	22830	22904	33295	33295					0.03779722848844358
RGPPKDKK	8	Unmodified	_RGPPKDKK_					0	0	0		ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2821350097656	2	463.282526	924.550499	0.64972	0.000301	-1.3406	-0.0006211	-0.69093	-0.0003201	463.2820025598746	12.01	0.093971	12.01	11.948	12.041	0					5	3	2	0	0	0	0.49216	1	2434	2434		60.972	3.1607	1	115260			32891	5368	22831	22905	33296	33296					0.08520599745554591
RGPPPKGRGL	10	Unmodified	_RGPPPKGRGL_					0	0	0			REV__nc|ENSG00000120913|Q96JY6-2|PDLIM2	REV__nc|ENSG00000120913|Q96JY6-2|PDLIM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.5459289550781	3	345.545442	1033.6145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.473	1	36.473	35.973	36.973	0								0	0	0	0.4201	1	13760	13760		22.58	0	1		+		32892	20996	22832	22906	33297	33297					0.09903379902516463
RGPTAIVI	8	Unmodified	_RGPTAIVI_					0	0	0			REV__ENSG00000174243|ENST00000308025|DDX23	REV__ENSG00000174243|ENST00000308025|DDX23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.7607116699219	2	413.760895	825.507237	0.39413	0.00016308	-0.77804	-0.00032192	-0.38391	-0.00015885	413.76050639458515	35.554	0.25943	35.554	35.447	35.706	0					14	7	3	0	0	0	0.78142	1	13781	13781		23.042	0	1	314480	+		32893	16558	22833	22907	33298	33298					0.08750409968274653
RGPTSRLPSP	10	Unmodified	_RGPTSRLPSP_					0	0	0		ENST00000574380.5_1_16:3508085-3533604:+|nuORF;ENST00000570551.5_1_16:3508085-3534852:+|nuORF	ENST00000574380.5_1_16:3508085-3533604:+|nuORF	ENST00000574380.5_1_16:3508085-3533604:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.3040771484375	2	534.301447	1066.58834	3.3808	0.0018064	1.0696	0.00057151	4.4504	0.0023779	534.3021147505538	33.687	0.27578	33.687	33.566	33.842	0					13	6	3	0	0	0	0.54861	1	12838	12838		40.058	1.0367	1	1302800			32894	10798	22834	22908	33299	33299					0.05771065940371045
RGQLFDPLV	9	Unmodified	_RGQLFDPLV_					0	0	0			REV__ENST00000483582.5_1_3:9974542-9975274:+|nuORF	REV__ENST00000483582.5_1_3:9974542-9975274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.8659362792969	3	348.86607	1043.57638	0.51261	0.00017883	-0.95409	-0.00033285	-0.44148	-0.00015402	348.8657795050312	25.282	0.26995	25.282	25.222	25.492	0					11	5	3	0	0	0	0.51817	1	8968	8968		37.812	3.639	1	636490	+		32895	15909	22835	22909	33300	33300					0.05633449197171103
RGQVPPSRL	9	Unmodified	_RGQVPPSRL_					0	0	0		ENST00000300737.8_1_11:3876932-3877493:+|nuORF	ENST00000300737.8_1_11:3876932-3877493:+|nuORF	ENST00000300737.8_1_11:3876932-3877493:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.29876708984375	2	505.298707	1008.58286	0.80201	0.00040525	-1.2954	-0.00065457	-0.4934	-0.00024932	505.29831598605676	15.166	0.31203	15.166	15.068	15.38	0					11	7	2	0	0	0	0.41113	1	3869	3869		40.778	0	1	276780			32896	8486	22836	22910	33301	33301					0.0789138714856108
RGQVRGGRCLP	11	Unmodified	_RGQVRGGRCLP_					0	0	0		ENST00000593422.5_1_19:49977845-49979877:+|nuORF	ENST00000593422.5_1_19:49977845-49979877:+|nuORF	ENST00000593422.5_1_19:49977845-49979877:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.2253723144531	3	400.224374	1197.65129	-0.6126	-0.00024518	3.2967	0.0013194	2.6841	0.0010742	400.2256940260204	31.877	0.16675	31.877	31.768	31.935	0					6	3	2	0	0	0	0.7767	1	11978	11978		20.03	1.4994	1	126990			32897	10984	22837	22911	33302	33302					0.060373084567800106
RGRADQLTL	9	Unmodified	_RGRADQLTL_					0	0	0		ENST00000346872.7_2_17:37921598-37921754:-|nuORF	ENST00000346872.7_2_17:37921598-37921754:-|nuORF	ENST00000346872.7_2_17:37921598-37921754:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2962646484375	2	515.293622	1028.57269	4.4962	0.0023169	0.012649	6.5181E-06	4.5089	0.0023234	515.293609140685	25.779	0.25475	25.779	25.701	25.955	0					9	4	3	0	0	0	0.25716	1	8054	8054		54.776	7.119	1	271000			32898	8765	22838	22912	33303	33303					0.05954779423313994
RGRARGVVF	9	Unmodified	_RGRARGVVF_					0	0	0		ENST00000449351.5_1_20:37075363-37077305:+|nuORF;ENST00000400436.6_1_20:37075363-37075684:+|nuORF;ENST00000440918.5_1_20:37075363-37076627:+|nuORF;ENST00000453698.5_1_20:37075363-37076212:+|nuORF	ENST00000449351.5_1_20:37075363-37077305:+|nuORF	ENST00000449351.5_1_20:37075363-37077305:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.3058776855469	2	509.306867	1016.59918	-0.050951	-2.595E-05	-1.539	-0.00078381	-1.5899	-0.00080976	509.3060598954696	52.636	0.24574	52.636	52.548	52.794	0					21	15	2	0	0	0	0.57706	1	18634	18634		24.203	1.1603	1	62972			32899	9246	22839	22913	33304	33304					0.09154513105318074
RGRCPLLL	8	Unmodified	_RGRCPLLL_					0	0	0		TMEM229B|p.A128Pfs*30|1|0.31|ENSG00000198133|chr14:67473542-67473542|C/-|frameshift_variant;ENSG00000198133|ENST00000554480|TMEM229B	TMEM229B|p.A128Pfs*30|1|0.31|ENSG00000198133|chr14:67473542-67473542|C/-|frameshift_variant	TMEM229B|p.A128Pfs*30|1|0.31|ENSG00000198133|chr14:67473542-67473542|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.27960205078125	2	464.281472	926.548391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.04	1	49.04	48.54	49.54	0								0	0	0	1.7419	1	19440	19440		28.254	0	1				32900	7533	22840	22914	33305	33305					0.08217847736113981
RGRGGAALSL	10	Unmodified	_RGRGGAALSL_					0	0	0		nc|ENSG00000203618|P13224-2|GP1BB	nc|ENSG00000203618|P13224-2|GP1BB	nc|ENSG00000203618|P13224-2|GP1BB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2799987792969	2	479.283057	956.551562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.013	1	50.013	49.513	50.513	0								0	0	0	0.3639	1	19761	19761		40.778	10.275	1				32901	11718	22841	22915	33306	33306					0.0715481411446035
RGRHEVGAL	9	Unmodified	_RGRHEVGAL_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF;ENST00000462392.5_1_2:131100637-131103595:+|nuORF;ENST00000473689.5_1_2:131100487-131103328:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7822265625	2	497.780682	993.546811	3.3908	0.0016879	-0.7448	-0.00037075	2.646	0.0013171	497.7805531847604	26.19	0.13544	26.19	26.123	26.258	0					7	4	2	0	0	0	0.54081	1	8214	8214		27.882	27.882	1	63341			32902	4101	22842	22916	33307	33307					0.049779299716988135
RGRLAIRY	8	Unmodified	_RGRLAIRY_					0	0	0		ENST00000567123.1_3_15:75075012-75091204:+|nuORF	ENST00000567123.1_3_15:75075012-75091204:+|nuORF	ENST00000567123.1_3_15:75075012-75091204:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.81036376953125	2	502.809242	1003.60393	2.9266	0.0014715	-1.6404	-0.00082482	1.2862	0.00064669	502.80909579575325	46.829	0.1619	46.829	46.75	46.912	0					13	8	2	0	0	0	0.64096	1	18723	18723		42.474	5.3154	1	74633			32903	10768	22843	22917	33308	33308					0.10227397248081616
RGRRAGHA	8	Unmodified	_RGRRAGHA_					0	0	0			REV__nc|ENSG00000103707|Q96DP5-2|MTFMT	REV__nc|ENSG00000103707|Q96DP5-2|MTFMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.7534484863281	2	440.752259	879.489965	2.6348	0.0011613	-0.053615	-2.3631E-05	2.5811	0.0011376	440.75222552035166	19.515	0.31449	19.515	19.409	19.723	0					11	6	2	0	0	0	0.36926	1	6033	6033		74.517	0	1	5734400	+		32904	13694	22844	22918	33309	33309					0.04539927205837557
RGRRTAKSSA	10	Unmodified	_RGRRTAKSSA_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.3186645507812	2	545.31542	1088.61629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.245	1	51.245	50.745	51.745	0								0	0	0	0.40797	1	16673	16673		28.081	1.3886	1				32905	5036	22845	22919	33310	33310					0.07552388920453268
RGRSPSPI	8	Unmodified	_RGRSPSPI_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;MTCL1|p.P1841Lfs*22|1|0.05|ENSG00000168502|chr18:8826071-8826071|C/-|frameshift_variant;MTCL1|p.L1858Wfs*5|1|0.26|ENSG00000168502|chr18:8826125-8826125|C/-|frameshift_variant;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2515869140625	2	435.251226	868.487899	0.67358	0.00029318	-0.028723	-1.2502E-05	0.64486	0.00028067	435.2511148447803	46.197	1.0403	46.197	45.976	47.016	0					80	63	2	0	0	0	0.76283	1	17071	17071		25.45	0	1	131510			32906	6098	22846	22920	33311	33311					0.048394536773685104
RGRTRCNAG	9	Unmodified	_RGRTRCNAG_					0	0	0			REV__ENST00000409072.3_2_7:38725570-38725973:-|nuORF	REV__ENST00000409072.3_2_7:38725570-38725973:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7540283203125	2	495.754141	989.493729	-1.2148	-0.00060223	0.37401	0.00018542	-0.84077	-0.00041682	495.7543700341284	24.945	0.67123	24.945	24.618	25.289	0					69	22	5	0	0	0	0.39215	1	7769	7769		42.396	42.396	1	2326400	+		32907	18989	22847	22921	33312	33312					-0.0014377108261669491
RGRVCEFCF	9	Unmodified	_RGRVCEFCF_					0	0	0			REV__nc|ENSG00000103549|O75150-4|RNF40	REV__nc|ENSG00000103549|O75150-4|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7586669921875	2	558.757504	1115.50045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.552	1	20.552	20.052	21.052	0								0	0	0	0.38123	1	5800	5800		16.473	0.83134	1		+		32908	13688	22848	22922	33313	33313					-0.05267594246265617
RGRWRPGP	8	Unmodified	_RGRWRPGP_					0	0	0		ENST00000556922.1_1_16:90002208-90002319:+|nuORF	ENST00000556922.1_1_16:90002208-90002319:+|nuORF	ENST00000556922.1_1_16:90002208-90002319:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.27874755859375	2	491.278109	980.541666	-1.2598	-0.0006189	1.2742	0.00062599	0.014431	7.0896E-06	491.27874619656274	28.548	0.34338	28.548	28.377	28.72	0					23	13	2	0	0	0	0.74117	1	9234	9234		28.254	1.4582	1	217040			32909	10668	22849	22923	33314	33314					0.050616708997381465
RGRWTGPSS	9	Unmodified	_RGRWTGPSS_					0	0	0			REV__ENSG00000244607|ENST00000310232|CCDC13	REV__ENSG00000244607|ENST00000310232|CCDC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2564697265625	2	502.25704	1002.49953	-2.0785	-0.001044	0.92623	0.00046521	-1.1523	-0.00057875	502.25766594416353	16.963	0.12564	16.963	16.873	16.999	0					5	3	2	0	0	0	0.61124	1	4124	4124		16.473	0	1	106020	+		32910	12353	22850	22924	33315	33315					-0.0016234929928486963
RGSAEVQDCS	10	Unmodified	_RGSAEVQDCS_					0	0	0		nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;MYO3B|p.K1243Sfs*25|1|0.21|ENSG00000071909|chr2:170543980-170543980|A/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B	nc|ENSG00000071909|Q8WXR4-6|MYO3B	nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2261352539062	2	526.227288	1050.44002	-1.2235	-0.00064382	-0.66671	-0.00035084	-1.8902	-0.00099466	526.2270126858249	16.552	0.53613	16.552	16.394	16.93	0					34	15	5	0	0	0	0.58189	1	3972	3972		36.447	1.2947	1	3738900			32911	1479	22851	22925	33316	33316					-0.08318033095656574
RGSENEDLW	9	Unmodified	_RGSENEDLW_					0	0	0		ENSG00000162928|ENST00000295030|PEX13;PEX13|p.A212V|1|0.25|ENSG00000162928|chr2:61031961-61031961|C/T|missense_variant	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.2505493164062	2	553.249077	1104.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.781	1	28.781	28.281	29.281	0								0	0	0	0.33579	1	9599	9599		28.081	2.0181	1				32912	5514	22852	22926	33317	33317					-0.06446100326866144
RGSEPVPEK	9	Unmodified	_RGSEPVPEK_					0	0	0		nc|ENSG00000084070|Q8WU79-3|SMAP2;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2	nc|ENSG00000084070|Q8WU79-3|SMAP2	nc|ENSG00000084070|Q8WU79-3|SMAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.76690673828125	2	499.766906	997.519259	-0.0021095	-1.0542E-06	-0.43717	-0.00021848	-0.43927	-0.00021953	499.76678662912593	15.643	0.16829	15.643	15.534	15.702	0					8	3	3	0	0	0	0.15558	1	4308	4308		66.962	3.6557	1	333500			32913	1707	22853	22927	33318	33318					0.020399819208023473
RGSEPVPEK	9	Unmodified	_RGSEPVPEK_					0	0	0		nc|ENSG00000084070|Q8WU79-3|SMAP2;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2	nc|ENSG00000084070|Q8WU79-3|SMAP2	nc|ENSG00000084070|Q8WU79-3|SMAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7668762207031	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.631	1	15.631	15.131	16.131	0								0	0	0	0.12732	1	4163	4163		65.157	4.1853	1				32914	1707	22853	22927	33319	33319					0.020399819208023473
RGSFLNRRKR	10	Unmodified	_RGSFLNRRKR_					0	0	0			REV__ENST00000332290.3_1_6:170103039-170103093:+|nuORF	REV__ENST00000332290.3_1_6:170103039-170103093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.5942687988281	3	430.593566	1288.75887	0.97432	0.00041953	0.78218	0.0003368	1.7565	0.00075634	430.59394712076795	28.495	0.51678	28.495	28.343	28.86	0					22	10	3	0	0	0	0.59255	1	10322	10322		35.178	1.0917	1	547430	+		32915	18387	22854	22928	33320	33320					0.12604021382480823
RGSFLTLRK	9	Unmodified	_RGSFLTLRK_					0	0	0			REV__ENSG00000176903|ENST00000316836|PNMA1	REV__ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.330810546875	2	539.330008	1076.64546	0.25291	0.0001364	1.0309	0.00055601	1.2838	0.00069241	539.3305631821854	21.306	0.61942	21.306	21.204	21.823	0					29	14	3	0	0	0	0.41958	1	6757	6757		32.812	3.6629	1	3037600	+		32916	16677	22855	22929	33321	33321					0.11020533216742479
RGSGSESPQR	10	Unmodified	_RGSGSESPQR_					0	0	0		ENST00000509151.5_1_4:56376191-56412799:-|nuORF	ENST00000509151.5_1_4:56376191-56412799:-|nuORF	ENST00000509151.5_1_4:56376191-56412799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7622680664062	2	530.760143	1059.50573	3.431	0.001821	0.75397	0.00040018	4.1849	0.0022212	530.7604776305204	13.331	0.24115	13.331	13.226	13.467	0					12	5	4	0	0	0	0.4287	1	3073	3073		53.089	8.9722	1	483900			32917	10219	22856	22930	33322	33322					-0.021638758584231255
RGSIDVVV	8	Unmodified	_RGSIDVVV_					0	0	0			REV__CEP44|p.G157V|1|0.48|ENSG00000164118|chr4:174304332-174304332|G/T|missense_variant	REV__CEP44|p.G157V|1|0.48|ENSG00000164118|chr4:174304332-174304332|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.747802734375	2	422.747985	843.481417	-0.8593	-0.00036327	0.90891	0.00038424	0.049613	2.0974E-05	422.7481904958399	11.358	0.080667	11.358	11.286	11.367	0					7	4	2	0	0	0	0.66372	1	2177	2177		38.806	0	1	40619	+		32918	12433	22857	22931	33323	33323					0.05341515726001944
RGSIRKQR	8	Unmodified	_RGSIRKQR_					0	0	0			REV__ENST00000424426.1_1_6:49518739-49519689:+|nuORF	REV__ENST00000424426.1_1_6:49518739-49519689:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.2095642089844	3	334.208941	999.604994	0.37197	0.00012432	1.9249	0.00064331	2.2969	0.00076763	334.20964705850827	19.341	0.15642	19.341	19.256	19.413	0					7	4	2	0	0	0	0.72381	1	4983	4983		25.574	2.5316	1	70979	+		32919	17321	22858	22932	33324	33324					0.10517611616978684
RGSKAPALAS	10	Unmodified	_RGSKAPALAS_					0	0	0		nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128393248-128394989:+|nuORF;ENST00000494959.1_1_2:128392149-128394989:+|nuORF;ENST00000491278.5_1_2:128392149-128394989:+|nuORF	nc|ENSG00000169994|Q6PIF6|MYO7B	nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.27667236328125	2	479.277441	956.540328	-2.8933	-0.0013867	1.9814	0.00094963	-0.91189	-0.00043705	479.2783430670556	48.986	0.3266	48.986	48.84	49.167	0					27	20	2	0	0	0	0.6796	1	16226	16226		24.519	2.5593	1	80420			32920	6203	22859	22933	33325	33325					0.06031992020302823
RGSLNEQIAL	10	Unmodified	_RGSLNEQIAL_					0	0	0		nc|ENSG00000107897|Q5T8D3-4|ACBD5;nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8078002929688	2	550.806562	1099.59857	1.8441	0.0010157	-0.56296	-0.00031008	1.2812	0.00070567	550.806184061974	22.496	0.24516	22.496	22.39	22.635	0					11	5	3	0	0	0	0.073977	1	6698	6698		101.25	0	1	395090			32921	2503	22860	22934	33326	33326					0.052756288749378655
RGSLNEQIAL	10	Unmodified	_RGSLNEQIAL_					0	0	0		nc|ENSG00000107897|Q5T8D3-4|ACBD5;nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8070678710938	2	550.806562	1099.59857	1.8162	0.0010004	-1.1861	-0.00065333	0.63008	0.00034705	550.8058927941139	22.581	0.51816	22.581	22.421	22.939	0					26	10	3	0	0	0	0.19191	1	7541	7541		80.455	4.2849	1	3804700			32922	2503	22860	22934	33327	33327					0.052756288749378655
RGSSGLRGSG	10	Unmodified	_RGSSGLRGSG_					0	0	0		ENST00000355683.9_2_14:31424854-31495419:-|nuORF	ENST00000355683.9_2_14:31424854-31495419:-|nuORF	ENST00000355683.9_2_14:31424854-31495419:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.247802734375	2	467.246672	932.478791	-0.99432	-0.00046459	3.192	0.0014914	2.1977	0.0010269	467.2478851227593	32.523	0.11435	32.523	32.464	32.578	0					7	4	2	0	0	0	0.54861	1	10851	10851		40.058	0.80534	1	87893			32923	8800	22861	22935	33328	33328					0.009850603210566078
RGSSWLLL	8	Unmodified	_RGSSWLLL_					0	0	0			REV__ENST00000316967.10_1_15:84869536-84871628:-|nuORF	REV__ENST00000316967.10_1_15:84869536-84871628:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2713928222656	2	466.271627	930.528701	-0.9208	-0.00042934	0.21071	9.8248E-05	-0.71009	-0.00033109	466.271702179987	35.667	0.47487	35.667	35.518	35.993	0					65	23	4	0	0	0	0.7126	1	12158	12158		31.955	1.4512	1	1763500	+		32924	18309	22862	22936	33329	33329					0.06065794997005014
RGTHGRTHL	9	Unmodified	_RGTHGRTHL_					0	0	0			REV__ENST00000441747.6_1_19:1482426-1490130:-|nuORF	REV__ENST00000441747.6_1_19:1482426-1490130:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7836303710938	2	517.783756	1033.55296	-0.4244	-0.00021975	-0.46134	-0.00023888	-0.88575	-0.00045863	517.7836827115938	22.492	0.75649	22.492	22.187	22.944	0					31	15	3	0	0	0	0.13267	1	7606	7606		71.877	6.0743	1	2043000	+		32925	19243	22863	22937	33330	33330					0.03752448203249514
RGTKAWMETE	10	Unmodified	_RGTKAWMETE_					0	0	0		nc|ENSG00000165828|Q96NZ9-4|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.7897338867188	2	604.790055	1207.56556	-0.4461	-0.00026979	-2.9346	-0.0017748	-3.3807	-0.0020446	604.7882587549188	20.144	0.33579	20.144	19.954	20.29	0					20	7	4	0	0	0	0.4287	1	6193	6193		53.089	6.6322	1	894470			32926	11624	22864	22938	33331	33331					-0.029923212394123766
RGTKAWMETE	10	Unmodified	_RGTKAWMETE_					0	0	0		nc|ENSG00000165828|Q96NZ9-4|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.7888793945312	2	604.790055	1207.56556	-1.9132	-0.0011571	-2.4802	-0.0015	-4.3934	-0.0026571	604.7889289172841	19.875	0.24013	19.875	19.77	20.01	0					10	5	3	0	0	0	0.61238	1	5488	5488		32.751	1.2207	1	164290			32927	11624	22864	22938	33332	33332					-0.029923212394123766
RGTKTVQEKEN	11	Unmodified	_RGTKTVQEKEN_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	645.3439331054688	2	645.34404	1288.67353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.228	1	12.228	11.728	12.728	0								0	0	0	0.45674	1	2530	2530		23.378	1.6922	1				32928	5399	22865	22939	33333	33333					0.040737666155109764
RGTPGYLTL	9	Unmodified	_RGTPGYLTL_					0	0	0		ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	ENST00000574902.5_1_16:3191344-3191665:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.27362060546875	2	489.274367	976.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.108	1	37.108	36.608	37.608	0								0	0	0	0.28666	1	12557	12557		37.812	2.6108	1				32929	10821	22866	22940	33334	33334					0.04497473788796924
RGTVPSRYRLH	11	Unmodified	_RGTVPSRYRLH_					0	0	0		ENST00000540114.5_3_12:27832463-27832556:+|nuORF	ENST00000540114.5_3_12:27832463-27832556:+|nuORF	ENST00000540114.5_3_12:27832463-27832556:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	671.880615234375	2	671.378552	1340.74255	-1.3473	-0.00090452	0.48417	0.00032506	-0.86309	-0.00057946	671.3787734099216	24.834	0.71357	24.834	24.577	25.29	0					48	14	5	0	0	0	0.69524	1	8658	8658		28.081	0	1	7218200			32930	10528	22867	22941	33335	33335					0.08580895425734525
RGVGLVGGLPP	11	Unmodified	_RGVGLVGGLPP_					0	0	0			REV__ENST00000531840.1_1_11:2416972-2417500:+|nuORF	REV__ENST00000531840.1_1_11:2416972-2417500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.3101806640625	2	511.311284	1020.60801	-1.7601	-0.00089995	-0.16735	-8.5566E-05	-1.9274	-0.00098552	511.3111833888696	31.067	0.41114	31.067	30.891	31.303	0					18	11	2	0	0	0	0.3828	1	10604	10604		53.351	12.573	1	498370	+		32931	20065	22868	22942	33336	33336					0.09853441951145214
RGVLRAWI	8	Unmodified	_RGVLRAWI_					0	0	0			REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.8002014160156	2	485.800886	969.587219	-0.56053	-0.00027231	-1.9845	-0.00096409	-2.5451	-0.0012364	485.79988105563876	38.178	0.52985	38.178	37.754	38.283	0					13	11	2	0	0	0	0.65276	1	15000	15000		40.573	4.1259	1	69817	+		32932	18664	22869	22943	33337	33337					0.10120896362116127
RGVTADGDRV	10	Unmodified	_RGVTADGDRV_					0	0	0		nc|ENSG00000279245|Q8IWN6|FAM223A;nc|ENSG00000272681|A6NKX1|FAM223B	nc|ENSG00000279245|Q8IWN6|FAM223A	nc|ENSG00000279245|Q8IWN6|FAM223A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.274169921875	2	523.272887	1044.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.695	1	11.695	11.195	12.195	0								0	0	0	0.4201	1	2459	2459		8.2351	0.003791	1				32933	11802	22870	22944	33338	33338					0.010735986639929251
RGWGRQLRL	9	Unmodified	_RGWGRQLRL_					0	0	0			REV__ENST00000591390.1_1_19:640215-640473:+|nuORF	REV__ENST00000591390.1_1_19:640215-640473:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.8402709960938	2	571.338698	1140.66284	1.4666	0.00083791	-1.1003	-0.00062863	0.36629	0.00020928	571.8396707416523	36.532	0.083672	36.532	36.486	36.57	0					7	4	2	0	0	0	0.48389	1	11986	11986		34.173	1.3601	1	39390	+		32934	20528	22871	22945	33339	33339					0.09813873542407237
RGWVLRPA	8	Unmodified	_RGWVLRPA_					0	0	0		ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.78375244140625	2	477.785236	953.555919	-1.4736	-0.00070407	-0.44265	-0.00021149	-1.9163	-0.00091556	477.78503226803963	22.88	0.32332	22.88	22.748	23.071	0					28	11	4	0	0	0	0.64096	1	6757	6757		42.474	7.2737	1	1117000			32935	8330	22872	22946	33340	33340					0.0772832332801272
RHAALQVRG	9	Unmodified	_RHAALQVRG_					0	0	0		ENST00000562416.1_1_16:69788588-69788813:-|nuORF	ENST00000562416.1_1_16:69788588-69788813:-|nuORF	ENST00000562416.1_1_16:69788588-69788813:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.908	1	42.908	42.408	43.408	0								0	0	0	0.28996	1	17150	17150		36.447	2.2742	1				32936	10721	22873	22947	33341	33341					0.07541922725658878
RHALNLQR	8	Unmodified	_RHALNLQR_					0	0	0			REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5340270996094	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.645	1	48.645	48.145	49.145	0								0	0	0	1.7419	1	18394	18394		16.473	6.7675	1		+		32937	20177	22874	22948	33342	33342					0.07541922725658878
RHARAPGPVF	10	Unmodified	_RHARAPGPVF_					0	0	0		ENST00000592937.1_1_19:2476862-2477408:+|nuORF	ENST00000592937.1_1_19:2476862-2477408:+|nuORF	ENST00000592937.1_1_19:2476862-2477408:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.3099975585938	2	554.312149	1106.60975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.625	1	40.625	40.125	41.125	0								0	0	0	0.40002	1	16011	16011		30.504	0.18592	1				32938	10976	22875	22949	33343	33343					0.06070495759740879
RHDAALQQ	8	Unmodified	_RHDAALQQ_					0	0	0			REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF	REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.74639892578125	2	469.743765	937.472977	0.44352	0.00020834	4.1399	0.0019447	4.5834	0.002153	469.7458946481012	24.757	0.14452	24.757	24.67	24.814	0					5	3	2	0	0	0	0.29286	1	8367	8367		84.916	8.1414	1	90773	+		32939	19695	22876	22950	33344	33344					0.001739618093779427
RHDRVRDN	8	Unmodified	_RHDRVRDN_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2775268554688	2	534.276295	1066.53804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.643	1	29.643	29.143	30.143	0								0	0	0	1.7419	1	9669	9669		16.473	0	1				32940	7369	22877	22951	33345	33345					0.0074295633521614945
RHFVAIHK	8	Unmodified	_RHFVAIHK_					0	0	0			REV__ENST00000508922.5_3_5:52394525-52403022:-|nuORF	REV__ENST00000508922.5_3_5:52394525-52403022:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53411865234375	3	336.534766	1006.58247	-1.9123	-0.00064357	0.27522	9.2621E-05	-1.6371	-0.00055095	336.5348662131169	33.605	1.3823	33.605	33.057	34.44	0					64	41	2	0	0	0	0.79882	1	11979	11979		21.96	21.96	1	142590	+		32941	15970	22878	22952	33346	33346					0.0794401221935459
RHGGKGGL	8	Unmodified	_RHGGKGGL_					0	0	0			REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.22503662109375	2	391.225011	780.435469	0.56561	0.00022128	-0.014544	-5.6901E-06	0.55107	0.00021559	391.2250229807516	43.706	0.27799	43.706	43.59	43.868	0					24	17	2	0	0	0	0.7914	1	13751	13751		14.664	14.664	1	38058	+		32942	22146	22879	22953	33347	33347					0.036469153344341976
RHGLQQRL	8	Unmodified	_RHGLQQRL_					0	0	0			REV__nc|ENSG00000240771|Q86VW2-2|ARHGEF25	REV__nc|ENSG00000240771|Q86VW2-2|ARHGEF25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5344543457031	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.334	1	49.334	48.834	49.834	0								0	0	0	1.7419	1	19515	19515		21.96	3.6355	1		+		32943	17683	22880	22954	33348	33348					0.0754192272564751
RHGPTITVK	9	Unmodified	_RHGPTITVK_					0	0	0		CON__P00978	CON__P00978	CON__P00978	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.86859130859375	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.088	1	55.088	54.588	55.588	0								0	0	0	0.36056	1	19139	19139		22.58	1.7425	1			+	32944	629	22881	22955	33349	33349					0.0841227129130857
RHGQLAEAG	9	Unmodified	_RHGQLAEAG_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7455139160156	2	469.743765	937.472977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.745	1	24.745	24.245	25.245	0								0	0	0	0.21054	1	8696	8696		49.442	1.7842	1				32945	2254	22882	22956	33350	33350					0.001739618093779427
RHHLPGRA	8	Unmodified	_RHHLPGRA_					0	0	0			REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.269775390625	2	472.270284	942.526016	-2.4356	-0.0011502	0.99083	0.00046794	-1.4447	-0.00068231	472.27081056481387	12.613	0.057205	12.613	12.594	12.651	0					6	3	2	0	0	0	0.70055	1	2457	2457		33.516	33.516	1	43780	+		32946	20844	22883	22957	33351	33351					0.05245384382703833
RHIQLVHR	8	Unmodified	_RHIQLVHR_					0	0	0			REV__SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	REV__SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.8200073242188	2	529.820141	1057.62573	1.15	0.00060932	-1.7904	-0.00094858	-0.64034	-0.00033926	529.8192685408792	27.328	0.20003	27.328	27.211	27.411	0					10	8	2	0	0	0	0.7126	1	8416	8416		31.955	8.9124	1	53907	+		32947	13881	22884	22958	33352	33352					0.09922201996641888
RHKPAEAQH	9	Unmodified	_RHKPAEAQH_					0	0	0			REV__ENST00000528438.5_2_17:72732794-72739442:+|nuORF	REV__ENST00000528438.5_2_17:72732794-72739442:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2816162109375	2	537.283589	1072.55262	0.74019	0.00039769	-4.2665	-0.0022923	-3.5263	-0.0018946	537.2817501668453	12.302	0.059542	12.302	12.251	12.311	0					5	3	2	0	0	0	0.57706	1	2335	2335		24.203	3.7209	1	39578	+		32948	20019	22885	22959	33353	33353					0.019250284833560727
RHKQAEEAP	9	Unmodified	_RHKQAEEAP_					0	0	0			REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2734985351562	2	533.275429	1064.53631	-0.43889	-0.00023405	1.0374	0.0005532	0.59847	0.00031915	533.7786709082109	31.652	0.2724	31.652	31.524	31.796	0					21	10	3	0	0	0	0.35021	1	10486	10486		45.972	6.7194	1	93044	+		32949	14653	22886	22960	33354	33354					0.006619025266218159
RHKRGLSA	8	Unmodified	_RHKRGLSA_					0	0	0			REV__ENSG00000165553|ENST00000298352|NGB	REV__ENSG00000165553|ENST00000298352|NGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7786865234375	2	462.777942	923.541332	0.71314	0.00033002	1.467	0.00067888	2.1801	0.0010089	462.778488191765	42.159	0.20926	42.159	42.031	42.24	0					18	10	2	0	0	0	0.68432	1	16543	16543		35.618	7.736	1	114330	+		32950	16051	22887	22961	33355	33355					0.0765025117989353
RHKRGLSA	8	Unmodified	_RHKRGLSA_					0	0	0			REV__ENSG00000165553|ENST00000298352|NGB	REV__ENSG00000165553|ENST00000298352|NGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7791748046875	2	462.777942	923.541332	2.5764	0.0011923	0.52548	0.00024318	3.1019	0.0014355	462.7781446259991	42.102	0.50092	42.102	41.906	42.407	0					23	13	3	0	0	0	0.72381	1	16769	16769		30.504	30.504	1	446600	+		32951	16051	22887	22961	33356	33356					0.0765025117989353
RHLKCLLP	8	Unmodified	_RHLKCLLP_					0	0	0		MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|9|3|sense	MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|9|3|sense	MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|9|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.2012023925781	3	327.200507	978.579691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.952	1	34.952	34.452	35.452	0								0	0	0	1.7419	1	13511	13511		7.6903	0	1				32952	11381	22888	22962	33357	33357					0.08954420770180604
RHLLAEVSKQ	10	Unmodified	_RHLLAEVSKQ_					0	0	0		ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.8456420898438	2	590.843479	1179.67241	3.1805	0.0018792	0.24946	0.00014739	3.43	0.0020266	590.8435977019732	22.215	0.5166	22.215	22.105	22.622	0					17	10	2	0	0	0	0.11308	1	7367	7367		93.143	93.143	1	2474100			32953	7576	22889	22963	33358	33358					0.08975597037260741
RHLPDNRL	8	Unmodified	_RHLPDNRL_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.78985595703125	2	510.788507	1019.56246	3.069	0.0015676	0.25145	0.00012844	3.3204	0.001696	510.7885774897551	40.042	0.63514	40.042	39.943	40.578	0					45	14	4	0	0	0	0.29286	1	15855	15855		63.306	3.188	1	11377000	+		32954	12263	22890	22964	33359	33359					0.05346216488760547
RHLQGRIQ	8	Unmodified	_RHLQGRIQ_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.533935546875	3	336.533425	1006.57845	2.5147	0.00084627	0.079035	2.6598E-05	2.5937	0.00087287	336.5334198063538	56.837	0.98361	56.837	56.018	57.002	0					87	60	2	0	0	0	0.79882	1	21268	21268		21.96	5.4867	1	106600	+	+	32955	12612	22891	22965	33360	33360					0.0754192272564751
RHLQGRIQ	8	Unmodified	_RHLQGRIQ_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5345458984375	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.369	1	50.369	49.869	50.869	0								0	0	0	1.7419	1	19871	19871		29.15	0	1		+	+	32956	12612	22891	22965	33361	33361					0.0754192272564751
RHMKTHTSEK	10	Unmodified	_RHMKTHTSEK_					0	0	0		nc|ENSG00000124092|Q8NI51-9|CTCFL;nc|ENSG00000124092|Q8NI51-4|CTCFL;nc|ENSG00000124092|Q8NI51-2|CTCFL;nc|ENSG00000124092|Q8NI51-8|CTCFL;CTCFL|p.A642Efs*10|1|0.05|ENSG00000124092|chr20:57498614-57498617|CTGG/-|frameshift_variant;ENSG00000124092|ENST00000243914|CTCFL;nc|ENSG00000124092|Q8NI51-3|CTCFL;nc|ENSG00000124092|Q8NI51-7|CTCFL;nc|ENSG00000124092|Q8NI51-11|CTCFL;nc|ENSG00000124092|Q8NI51-6|CTCFL;nc|ENSG00000124092|Q8NI51-5|CTCFL;nc|ENSG00000124092|Q8NI51-10|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.8233642578125	2	627.822221	1253.62989	1.3996	0.00087872	1.2796	0.00080339	2.6793	0.0016821	628.324444890011	43.4	0.19032	43.4	43.329	43.52	0					15	10	2	0	0	0	0.35046	1	16980	16980		61.691	0	1	37675			32957	707	22892	22966	33362	33362					0.013218786373954572
RHNEGWWKG	9	Unmodified	_RHNEGWWKG_					0	0	0		nc|ENSG00000057019|Q96PD2-2|DCBLD2	nc|ENSG00000057019|Q96PD2-2|DCBLD2	nc|ENSG00000057019|Q96PD2-2|DCBLD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.286376953125	2	585.283589	1168.55262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.909	1	14.909	14.409	15.409	0								0	0	0	0.31838	1	3145	3145		31.53	2.3803	1				32958	11429	22893	22967	33363	33363					-0.024909715166359092
RHPDVQGRVQ	10	Unmodified	_RHPDVQGRVQ_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.3214721679688	2	596.320703	1190.62685	0.066387	3.9588E-05	1.0657	0.0006355	1.1321	0.00067509	596.3213544404947	38.703	0.21916	38.703	38.543	38.763	0					11	4	3	0	0	0	0.61187	1	15227	15227		32.812	12.816	1	199010			32959	1508	22894	22968	33364	33364					0.03916371574905497
RHPHKGIPP	9	Unmodified	_RHPHKGIPP_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.8035888671875	2	519.801417	1037.58828	3.3618	0.0017475	0.95762	0.00049777	4.3194	0.0022452	519.8020862645038	11.571	0.10957	11.571	11.533	11.642	0					5	3	2	0	0	0	0.61124	1	2276	2276		12.207	0.69583	1	480790			32960	7165	22895	22969	33365	33365					0.07099110731041947
RHQAVCKTN	9	Carbamidomethyl (C)	_RHQAVC(Carbamidomethyl (C))KTN_	RHQAVC(1)KTN		RHQAVC(72)KTN		0	1	0			REV__DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant	REV__DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.28173828125	2	557.282731	1112.55091	-0.91619	-0.00051058	0.96784	0.00053936	0.05165	2.8784E-05	557.2832133788359	31.986	0.32676	31.986	31.876	32.203	0					24	9	4	0	0	0	0.13267	1	11049	11049		71.877	71.877	1	979970	+		32961	12672	22896	22970	33366	33366	498				-0.0008634859689209406
RHRESLRIQ	9	Unmodified	_RHRESLRIQ_					0	0	0			REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.89947509765625	3	398.898655	1193.67414	3.1577	0.0012596	-0.92559	-0.00036922	2.2321	0.00089038	398.8982804619396	25.136	0.5187	25.136	24.979	25.498	0					19	10	4	0	0	0	0.3269	1	8754	8754		47.96	47.96	1	1832200	+		32962	21565	22897	22971	33367	33367					0.08504650845884498
RHRGRSPE	8	Unmodified	_RHRGRSPE_					0	0	0		SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant;ENSG00000139767|ENST00000267260|SRRM4	SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant	SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7690124511719	2	497.768106	993.521659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.701	1	18.701	18.201	19.201	0								0	0	0	1.7419	1	4697	4697		12.959	0	1				32963	4352	22898	22972	33368	33368					0.02463875169144103
RHRIRGAS	8	Unmodified	_RHRIRGAS_					0	0	0			REV__ENST00000591608.1_1_19:11474500-11475052:+|nuORF	REV__ENST00000591608.1_1_19:11474500-11475052:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.78204345703125	2	476.781016	951.54748	0.6369	0.00030366	1.2947	0.00061729	1.9316	0.00092096	476.7817259071074	23.956	1.4605	23.956	23.646	25.106	0					46	29	4	0	0	0	0.52345	1	8332	8332		57.811	57.811	1	1840600	+		32964	20531	22899	22973	33369	33369					0.06976769411414807
RHRLEVPR	8	Unmodified	_RHRLEVPR_					0	0	0		ENST00000300849.4_2_16:31085137-31085191:-|nuORF	ENST00000300849.4_2_16:31085137-31085191:-|nuORF	ENST00000300849.4_2_16:31085137-31085191:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8182373046875	2	531.817599	1061.62064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.224	1	50.224	49.724	50.724	0								0	0	0	1.7419	1	19837	19837		31.955	0	1				32965	8487	22900	22974	33370	33370					0.09229898134026371
RHRQLGLQ	8	Unmodified	_RHRQLGLQ_					0	0	0		ENSG00000149328|ENST00000535456|GLB1L2	ENSG00000149328|ENST00000535456|GLB1L2	ENSG00000149328|ENST00000535456|GLB1L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341491699219	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.503	1	46.503	46.003	47.003	0								0	0	0	1.7419	1	17869	17869		20.947	2.6848	1				32966	4878	22901	22975	33371	33371					0.0754192272564751
RHRVGFHHM	9	Unmodified	_RHRVGFHHM_					0	0	0			REV__ENST00000490922.1_1_22:24936902-24943992:-|nuORF	REV__ENST00000490922.1_1_22:24936902-24943992:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	588.800537109375	2	588.801426	1175.5883	1.5194	0.00089463	-2.5757	-0.0015166	-1.0563	-0.00062196	588.7997190322791	43.401	0.11791	43.401	43.366	43.484	0					12	7	2	0	0	0	0.41113	1	13702	13702		18.324	0	1	90713	+		32967	15006	22902	22976	33372	33372					0.0075278745939613145
RHRVQLAQ	8	Unmodified	_RHRVQLAQ_					0	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53387451171875	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.89	1	34.89	34.39	35.39	0								0	0	0	1.7419	1	11785	11785		21.96	2.8564	1		+		32968	21020	22903	22977	33373	33373					0.07541922725658878
RHRVQLAQ	8	Unmodified	_RHRVQLAQ_					0	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343017578125	3	336.533425	1006.57845	1.4876	0.00050062	1.2683	0.00042683	2.7559	0.00092745	336.5337967162917	25.098	6.4193	25.098	24.447	30.866	0					183	131	2	0	0	0	0.79882	1	9372	9372		21.96	9.1482	1	646530	+		32969	21020	22903	22977	33374	33374					0.07541922725658878
RHTILKNKY	9	Unmodified	_RHTILKNKY_					0	0	0		ENST00000464124.2_1_5:124144562-124144799:-|nuORF	ENST00000464124.2_1_5:124144562-124144799:-|nuORF	ENST00000464124.2_1_5:124144562-124144799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.8486938476562	2	586.848564	1171.68258	1.4464	0.00084883	-1.2396	-0.00072745	0.20683	0.00012138	586.8479916451142	31.019	0.55775	31.019	30.913	31.471	0					28	11	4	0	0	0	0.47038	1	11561	11561		35.618	1.4457	1	1240600			32970	9766	22904	22978	33375	33375					0.10360204762514513
RHTKRKNAP	9	Unmodified	_RHTKRKNAP_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.330078125	2	554.328331	1106.64211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.489	1	16.489	15.989	16.989	0								0	0	0	0.36056	1	3966	3966		21.96	9.0007	1		+		32971	21570	22905	22979	33376	33376					0.09305283162734668
RHTPRSPWA	9	Unmodified	_RHTPRSPWA_					0	0	0		UAP1L1|p.G228Afs*125|1|0.26|ENSG00000197355|chr9:137078984-137078984|G/-|frameshift_variant	UAP1L1|p.G228Afs*125|1|0.26|ENSG00000197355|chr9:137078984-137078984|G/-|frameshift_variant	UAP1L1|p.G228Afs*125|1|0.26|ENSG00000197355|chr9:137078984-137078984|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2930908203125	2	554.293956	1106.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.463	1	24.463	23.963	24.963	0								0	0	0	0.1836	1	7224	7224		53.351	7.3792	1				32972	23083	22906	22980	33377	33377					0.02433618863051379
RHTVTARQL	9	Unmodified	_RHTVTARQL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.8179931640625	2	541.314889	1080.61522	-0.14089	-7.6264E-05	1.9516	0.0010564	1.8107	0.00098018	541.3160221919842	37.251	0.30489	37.251	37.086	37.391	0					27	16	2	0	0	0	0.50858	1	12625	12625		31.53	1.0262	1	78329			32973	11582	22907	22981	33378	33378					0.0781417455157225
RHVGCCSR	8	Unmodified	_RHVGCCSR_					0	0	0		ENST00000415899.1_3_1:204463491-204463809:-|nuORF	ENST00000415899.1_3_1:204463491-204463809:-|nuORF	ENST00000415899.1_3_1:204463491-204463809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.21392822265625	2	459.213263	916.411974	0.80136	0.000368	0.45925	0.00021089	1.2606	0.00057889	459.2134879649889	16.539	0.13957	16.539	16.492	16.632	0					6	3	2	0	0	0	0.69548	1	4517	4517		34.173	34.173	1	144630			32974	9350	22908	22982	33379	33379					-0.04957589766058845
RHVRPCKL	8	Unmodified	_RHVRPCKL_					0	0	0		ENST00000579724.5_2_17:66244244-66246408:+|nuORF	ENST00000579724.5_2_17:66244244-66246408:+|nuORF	ENST00000579724.5_2_17:66244244-66246408:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.8687744140625	3	336.867639	1007.58109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.398	1	51.398	50.898	51.898	0								0	0	0	1.7419	1	20116	20116		21.96	5.4867	1				32975	10863	22909	22983	33380	33380					0.07760054858965759
RHVVLRGY	8	Unmodified	_RHVVLRGY_					0	0	0			REV__ENST00000257915.9_1_12:51566268-51566466:-|nuORF	REV__ENST00000257915.9_1_12:51566268-51566466:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2951965332031	2	500.295968	998.577383	-2.1409	-0.0010711	0.62121	0.00031079	-1.5197	-0.00076029	500.2962399545055	34.012	0.36262	34.012	33.918	34.281	0					21	11	2	0	0	0	0.64096	1	12068	12068		42.474	42.474	1	400080	+		32976	17990	22910	22984	33381	33381					0.07803708356755124
RHWTHRRVFYF	11	Unmodified	_RHWTHRRVFYF_					0	0	0		ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.9505004882812	3	535.616371	1603.82728	1.2437	0.00066615	0.39595	0.00021208	1.6396	0.00087822	535.616548436311	40.214	0.41536	40.214	39.965	40.38	0					31	24	2	0	0	0	0.82929	1	13004	13004		8.7993	2.4784	1	198110			32977	8461	22911	22985	33382	33382					0.04952265962333513
RHWTHRRVFYF	11	Unmodified	_RHWTHRRVFYF_					0	0	0		ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.6175537109375	3	535.616371	1603.82728	2.202	0.0011794	-0.63309	-0.00033909	1.5689	0.00084034	535.6160754966188	40.563	1.1695	40.563	39.85	41.019	0					64	44	2	0	0	0	0.86838	1	15331	15331		3.2113	1.7926	1	185650			32978	8461	22911	22985	33383	33383					0.04952265962333513
RIADIFVKK	9	Unmodified	_RIADIFVKK_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.8976135253906	3	363.897481	1088.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.46	1	27.46	26.96	27.96	0								0	0	0	0.18541	1	8464	8464		53.089	3.5529	1				32979	6797	22912	22986	33384	33384					0.12982588019326613
RIADIFVKK	9	Unmodified	_RIADIFVKK_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.89752197265625	3	363.897481	1088.67061	0.74088	0.0002696	-0.65331	-0.00023774	0.08757	3.1866E-05	363.8972848482188	27.734	0.67904	27.734	27.583	28.262	0					31	16	3	0	0	0	0.2546	1	9701	9701		55.084	13.657	1	614490			32980	6797	22912	22986	33385	33385					0.12982588019326613
RIADIFVKK	9	Unmodified	_RIADIFVKK_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.8973693847656	3	363.897481	1088.67061	0.28207	0.00010264	-0.77551	-0.00028221	-0.49344	-0.00017956	363.8973039953211	27.722	0.26239	27.722	27.569	27.831	0					11	5	3	0	0	0	0.24169	1	10064	10064		56.632	21.48	1	294020			32981	6797	22912	22986	33386	33386					0.12982588019326613
RIADIFVKK	9	Unmodified	_RIADIFVKK_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.8974304199219	3	363.897481	1088.67061	-0.10023	-3.6472E-05	-0.038927	-1.4165E-05	-0.13915	-5.0637E-05	363.8974432016111	27.621	0.51617	27.621	27.51	28.026	0					23	10	4	0	0	0	0.24169	1	9916	9916		56.632	22.711	1	1032900			32982	6797	22912	22986	33387	33387					0.12982588019326613
RIAESHLQSI	10	Unmodified	_RIAESHLQSI_					0	0	0		PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant;nc|ENSG00000131771|Q9UD71-2|PPP1R1B;ENSG00000131771|ENST00000254079|PPP1R1B;ENST00000580029.1_1_17:37790107-37792115:+|nuORF;ENST00000492037.5_1_17:37785754-37792115:+|nuORF	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.3203125	2	577.319837	1152.62512	1.5231	0.00087934	-0.96207	-0.00055542	0.56108	0.00032392	577.3194143127239	25.961	0.22175	25.961	25.874	26.096	0					12	5	3	0	0	0	0.2602	1	8906	8906		72.096	20.568	1	793260			32983	3739	22913	22987	33388	33388					0.05491317766291104
RIATGSFLK	9	Unmodified	_RIATGSFLK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000517543.1_1_8:4645110-4645266:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.79815673828125	2	496.798009	991.581465	3.4038	0.001691	-2.4032	-0.0011939	1.0006	0.00049709	496.7968585139424	27.066	0.095896	27.066	26.995	27.091	0					5	3	2	0	0	0	0.36135	1	8588	8588		45.022	0.9054	1	36285			32984	3528	22914	22988	33389	33389					0.08533753059805349
RIATGSFLK	9	Unmodified	_RIATGSFLK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000517543.1_1_8:4645110-4645266:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.79742431640625	2	496.798009	991.581465	-0.031735	-1.5766E-05	-0.65791	-0.00032685	-0.68965	-0.00034262	496.79761028002883	27.279	0.31878	27.279	27.22	27.539	0					10	6	2	0	0	0	0.00324	1	9875	9875		167.23	64.455	1	683540			32985	3528	22914	22988	33390	33390					0.08533753059805349
RIATGSFLK	9	Unmodified	_RIATGSFLK_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000517543.1_1_8:4645110-4645266:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.79779052734375	2	496.798009	991.581465	-0.69538	-0.00034546	0.27114	0.0001347	-0.42424	-0.00021076	496.7980442445447	27.264	0.27044	27.264	27.154	27.424	0					12	5	3	0	0	0	0.04067	1	9724	9724		98.582	32.153	1	767030			32986	3528	22914	22988	33391	33391					0.08533753059805349
RIATVWCT	8	Unmodified	_RIATVWCT_					0	0	0			REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.251220703125	2	475.249837	948.485122	0.32352	0.00015375	1.4923	0.00070922	1.8158	0.00086297	475.25101232892024	30.495	0.52242	30.495	30.405	30.928	0					32	12	4	0	0	0	0.49216	1	11009	11009		60.972	9.6365	1	417020	+		32987	14104	22915	22989	33392	33392					0.008818622281978605
RIATVWCT	8	Unmodified	_RIATVWCT_					0	0	0			REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2509765625	2	475.249837	948.485122	-1.5671	-0.00074478	4.0582	0.0019287	2.4911	0.0011839	475.2517739883694	30.25	0.34616	30.25	30.193	30.539	0					16	11	2	0	0	0	0.58597	1	9920	9920		51.335	1.3109	1	171510	+		32988	14104	22915	22989	33393	33393					0.008818622281978605
RIATVWCT	8	Carbamidomethyl (C)	_RIATVWC(Carbamidomethyl (C))T_	RIATVWC(1)T		RIATVWC(61)T		0	1	0			REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.762451171875	2	503.760569	1005.50659	1.1903	0.00059962	1.4234	0.00071703	2.6136	0.0013167	503.76261859165925	28.697	0.66669	28.697	28.591	29.258	0					25	13	4	0	0	0	0.49216	1	10438	10438		60.972	9.6365	1	1634200	+		32989	14104	22915	22990	33394	33394	529				0.004052472569242127
RIATVWCT	8	Carbamidomethyl (C)	_RIATVWC(Carbamidomethyl (C))T_	RIATVWC(1)T		RIATVWC(61)T		0	1	0			REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	REV__GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7622985839844	2	503.760569	1005.50659	2.9293	0.0014757	0.35125	0.00017695	3.2806	0.0016526	503.76081876308905	28.683	0.2183	28.683	28.574	28.792	0					8	4	2	0	0	0	0.49216	1	10430	10430		60.972	25.771	1	3010800	+		32990	14104	22915	22990	33395	33395	529				0.004052472569242127
RICGYHVVQ	9	Unmodified	_RICGYHVVQ_					0	0	0			REV__CUL3|p.R153H|1|0.25|ENSG00000036257|chr2:224514693-224514693|C/T|missense_variant	REV__CUL3|p.R153H|1|0.25|ENSG00000036257|chr2:224514693-224514693|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7809448242188	2	537.779293	1073.54403	1.8925	0.0010177	0.91444	0.00049177	2.8069	0.0015095	537.779735490264	22.46	0.36066	22.46	22.35	22.711	0					24	7	5	0	0	0	0.18605	1	7590	7590		63.306	3.0123	1	6754000	+		32991	12651	22916	22991	33396	33396					0.010203385225395323
RICGYHVVQ	9	Unmodified	_RICGYHVVQ_					0	0	0			REV__CUL3|p.R153H|1|0.25|ENSG00000036257|chr2:224514693-224514693|C/T|missense_variant	REV__CUL3|p.R153H|1|0.25|ENSG00000036257|chr2:224514693-224514693|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7806396484375	2	537.779293	1073.54403	3.3491	0.0018011	-0.76057	-0.00040902	2.5886	0.0013921	537.7788463253726	22.464	0.41792	22.464	22.304	22.722	0					23	8	5	0	0	0	0.077948	1	7460	7460		85.359	0.19866	1	5658100	+		32992	12651	22916	22991	33397	33397					0.010203385225395323
RICKGWAT	8	Unmodified	_RICKGWAT_					0	0	0			REV__ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant	REV__ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7502136230469	2	467.750005	933.485456	-1.099	-0.00051406	1.3482	0.00063063	0.24921	0.00011657	467.75068673260665	12.507	0.64219	12.507	12.37	13.012	0					22	15	3	0	0	0	0.7887	1	2838	2838		12.959	12.959	1	265580	+		32993	12167	22917	22992	33398	33398					0.016052819480592007
RICLERAR	8	Unmodified	_RICLERAR_					0	0	0			REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant	REV__HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.79217529296875	2	508.792735	1015.57092	-0.021385	-1.0881E-05	-0.42769	-0.00021761	-0.44908	-0.00022849	508.79242879156413	42.579	0.58076	42.579	42.317	42.898	0					68	30	3	0	0	0	0.72381	1	16068	16068		30.504	2.6214	1	178690	+		32994	20755;15657	22918	22993	33399	33399					0.06375447133711987
RICREFNG	8	Unmodified	_RICREFNG_					0	0	0			REV__ENSG00000141965|ENST00000269856|FEM1A	REV__ENSG00000141965|ENST00000269856|FEM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.74853515625	2	497.747993	993.481433	-0.28586	-0.00014229	0.46325	0.00023058	0.17738	8.8292E-05	497.7479157571811	11.301	0.041772	11.301	11.269	11.311	0					4	2	2	0	0	0	0.78539	1	2166	2166		10.866	0.68079	1	35145	+		32995	15139	22919	22994	33400	33400					-0.015568075456599217
RIDYGKQKTD	10	Unmodified	_RIDYGKQKTD_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.32470703125	2	612.322576	1222.6306	2.9688	0.0018179	0.98954	0.00060592	3.9584	0.0024238	612.3232019821291	31.893	0.67053	31.893	31.633	32.304	0					28	10	4	0	0	0	0.18316	1	11984	11984		81.525	5.3553	1	987930	+		32996	16914	22920	22995	33401	33401					0.028189965580850185
RIEQMEEVR	9	Unmodified	_RIEQMEEVR_					0	0	0		ENST00000489895.5_1_3:52512001-52514911:+|nuORF;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant;ENSG00000010322|ENST00000345716|NISCH	ENST00000489895.5_1_3:52512001-52514911:+|nuORF	ENST00000489895.5_1_3:52512001-52514911:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.3035888671875	2	595.303329	1188.59211	0.49717	0.00029597	0.51628	0.00030734	1.0134	0.00060331	595.3034457517823	31.157	0.1397	31.157	31.07	31.21	0					7	4	2	0	0	0	0.41113	1	10695	10695		40.778	0.71999	1	92416			32997	1037	22921	22996	33402	33402					0.005353676519234796
RIESLPIK	8	Unmodified	_RIESLPIK_					0	0	0		nc|ENSG00000112280|P20849-3|COL9A1;COL9A1|p.P396Qfs*33|1|0.39|ENSG00000112280|chr6:70270324-70270324|G/-|frameshift_variant;ENSG00000112280|ENST00000357250|COL9A1	nc|ENSG00000112280|P20849-3|COL9A1	nc|ENSG00000112280|P20849-3|COL9A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.30010986328125	2	478.300384	954.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.888	1	11.888	11.388	12.388	0								0	0	0	1.7419	1	2246	2246		79.451	16.145	1				32998	616	22922	22997	33403	33403					0.10710637202566886
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.3698120117188	2	626.369664	1250.72478	1.6334	0.0010231	-1.6964	-0.0010626	-0.063027	-3.9478E-05	626.368718467563	22.294	0.15377	22.294	22.214	22.368	0					6	4	2	0	0	0	0.38061	1	6288	6288		44.377	25.274	1	41816			32999	2377	22923	22998	33404	33404					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.3695678710938	2	626.369664	1250.72478	-0.5288	-0.00033122	0.7166	0.00044886	0.1878	0.00011763	626.3700770261688	22.593	0.34367	22.593	22.474	22.817	0					19	8	3	0	0	0	0.034131	1	7381	7381		106.68	58.724	1	543020			33000	2377	22923	22998	33405	33405					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.9151611328125	3	417.915535	1250.72478	0.065934	2.7555E-05	-0.43166	-0.0001804	-0.36573	-0.00015284	417.91535913566656	22.497	0.60937	22.497	22.318	22.927	0					31	12	4	0	0	0	0.16013	1	7598	7598		79.07	39.817	1	944140			33001	2377	22923	22998	33406	33406					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.9156799316406	3	417.915535	1250.72478	0.09783	4.0885E-05	-0.15211	-6.3568E-05	-0.054277	-2.2683E-05	417.9155314987514	22.398	0.1947	22.398	22.259	22.454	0					7	4	2	0	0	0	0.098165	1	6655	6655		90.149	60.598	1	103600			33002	2377	22923	22998	33407	33407					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.9154052734375	3	417.915535	1250.72478	-0.2962	-0.00012379	-0.0042038	-1.7568E-06	-0.3004	-0.00012554	417.9154874149102	22.498	0.26889	22.498	22.287	22.555	0					16	5	4	0	0	0	0.061126	1	7457	7457		99.788	64.636	1	2759600			33003	2377	22923	22998	33408	33408					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	626.36962890625	2	626.369664	1250.72478	-0.057266	-3.5869E-05	0.068482	4.2895E-05	0.011217	7.0259E-06	626.3696558932197	22.498	0.31782	22.498	22.337	22.655	0					12	6	3	0	0	0	0.10641	1	7482	7482		80.455	41.701	1	317050			33004	2377	22923	22998	33409	33409					0.10944180170872642
RIGGISGIFK	10	Unmodified	_RIGGISGIFK_					0	0	0		DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant;ENST00000463982.2_1_3:137890290-137893637:-|nuORF;DBR1|p.Y142Lfs*2|1|0.38|ENSG00000138231|chr3:138170173-138170174|-/G|frameshift_variant;DBR1|p.S224Lfs*6|1|0.26|ENSG00000138231|chr3:138167125-138167125|A/-|frameshift_variant;ENSG00000138231|ENST00000260803|DBR1	DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant	DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.3189086914062	2	524.319109	1046.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.071	1	35.071	34.571	35.571	0								0	0	0	0.20411	1	13122	13122		68.846	30.04	1				33005	743	22924	22999	33410	33410					0.10221728468172842
RIGGISGIFK	10	Unmodified	_RIGGISGIFK_					0	0	0		DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant;ENST00000463982.2_1_3:137890290-137893637:-|nuORF;DBR1|p.Y142Lfs*2|1|0.38|ENSG00000138231|chr3:138170173-138170174|-/G|frameshift_variant;DBR1|p.S224Lfs*6|1|0.26|ENSG00000138231|chr3:138167125-138167125|A/-|frameshift_variant;ENSG00000138231|ENST00000260803|DBR1	DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant	DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.31884765625	2	524.319109	1046.62366	1.0111	0.00053014	0.19203	0.00010069	1.2031	0.00063082	524.319159356758	35.063	0.62085	35.063	34.97	35.591	0					26	17	3	0	0	0	0.27396	1	13544	13544		76.17	9.7404	1	259310			33006	743	22924	22999	33411	33411					0.10221728468172842
RIGGISGIFK	10	Unmodified	_RIGGISGIFK_					0	0	0		DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant;ENST00000463982.2_1_3:137890290-137893637:-|nuORF;DBR1|p.Y142Lfs*2|1|0.38|ENSG00000138231|chr3:138170173-138170174|-/G|frameshift_variant;DBR1|p.S224Lfs*6|1|0.26|ENSG00000138231|chr3:138167125-138167125|A/-|frameshift_variant;ENSG00000138231|ENST00000260803|DBR1	DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant	DBR1|p.S129F|1|0.37|ENSG00000138231|chr3:138171650-138171650|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3193969726562	2	524.319109	1046.62366	0.5195	0.00027238	0.24332	0.00012758	0.76282	0.00039996	524.3191492389753	34.957	0.72118	34.957	34.83	35.552	0					31	14	3	0	0	0	0.05301	1	13451	13451		106.88	32.625	1	664450			33007	743	22924	22999	33412	33412					0.10221728468172842
RIGNFIVKK	9	Unmodified	_RIGNFIVKK_					0	0	0		nc|ENSG00000140263|Q00796-2|SORD;ENSG00000140263|ENST00000267814|SORD	nc|ENSG00000140263|Q00796-2|SORD	nc|ENSG00000140263|Q00796-2|SORD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8977355957031	3	358.897593	1073.67095	0.86713	0.00031121	-0.52858	-0.00018971	0.33855	0.0001215	358.8973408770892	22.946	0.17719	22.946	22.858	23.035	0					8	4	3	0	0	0	0.099922	1	7520	7520		75.043	12.936	1	114530			33008	4372	22925	23000	33413	33413					0.13706007739165216
RIGNFIVKK	9	Unmodified	_RIGNFIVKK_					0	0	0		nc|ENSG00000140263|Q00796-2|SORD;ENSG00000140263|ENST00000267814|SORD	nc|ENSG00000140263|Q00796-2|SORD	nc|ENSG00000140263|Q00796-2|SORD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.8976135253906	3	358.897593	1073.67095	0.29954	0.0001075	-0.50895	-0.00018266	-0.20941	-7.5158E-05	358.89741184468215	22.87	0.51878	22.87	22.711	23.229	0					22	10	3	0	0	0	0.14603	1	7790	7790		65.465	19.493	1	502580			33009	4372	22925	23000	33414	33414					0.13706007739165216
RIGNFIVKK	9	Unmodified	_RIGNFIVKK_					0	0	0		nc|ENSG00000140263|Q00796-2|SORD;ENSG00000140263|ENST00000267814|SORD	nc|ENSG00000140263|Q00796-2|SORD	nc|ENSG00000140263|Q00796-2|SORD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8974609375	3	358.897593	1073.67095	-0.063268	-2.2707E-05	0.048017	1.7233E-05	-0.015251	-5.4736E-06	358.8975768137391	22.842	0.41137	22.842	22.739	23.15	0					20	8	3	0	0	0	0.14603	1	7647	7647		65.465	20.443	1	1019000			33010	4372	22925	23000	33415	33415					0.13706007739165216
RIHEYKPL	8	Unmodified	_RIHEYKPL_					0	0	0		ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3023071289062	2	528.303458	1054.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.422	1	15.422	14.922	15.922	0								0	0	0	1.7419	1	4215	4215		21.96	5.4867	1				33011	7660	22926	23001	33416	33416					0.06725155434082808
RIHKGRLQ	8	Unmodified	_RIHKGRLQ_					0	0	0			REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.3164978027344	2	504.314692	1006.61483	2.9318	0.0014785	0.20859	0.00010519	3.1404	0.0015837	504.3147753707836	29.481	0.40688	29.481	29.375	29.781	0					26	8	4	0	0	0	0.60719	1	10791	10791		47.916	0	1	2972400	+		33012	21556	22927	23002	33417	33417					0.11178799622371116
RIHTMEKQ	8	Unmodified	_RIHTMEKQ_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7781982421875	2	521.776751	1041.53895	0.30765	0.00016052	2.7102	0.0014141	3.0179	0.0015747	521.7783983749737	12.505	0.095163	12.505	12.468	12.564	0					10	5	3	0	0	0	0.64144	1	2480	2480		42.396	3.1433	1	234060			33013	7499	22928	23003	33418	33418					0.01984034659903955
RIIAVDINK	9	Unmodified	_RIIAVDINK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.3245849609375	2	521.324391	1040.63423	2.0821	0.0010855	-1.0603	-0.00055277	1.0218	0.0005327	521.3238134182474	27.854	0.14993	27.854	27.762	27.912	0					5	3	2	0	0	0	0.21419	1	9769	9769		59.931	3.497	1	162720			33014	7385;7975	22929	23004	33419	33419					0.11553711122587629
RIIAVDINK	9	Unmodified	_RIIAVDINK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.324951171875	2	521.324391	1040.63423	1.0813	0.00056372	-0.55558	-0.00028964	0.52574	0.00027408	521.324211616034	27.82	0.16717	27.82	27.713	27.88	0					7	3	3	0	0	0	0.18416	1	10112	10112		63.534	0.22758	1	226620			33015	7385;7975	22929	23004	33420	33420					0.11553711122587629
RIIDVSTVK	9	Unmodified	_RIIDVSTVK_					0	0	0		ENST00000539333.5_1_11:114316741-114316810:+|nuORF;ENST00000539788.5_1_11:114314891-114320694:+|nuORF;ENST00000538791.3_1_11:114315223-114320694:+|nuORF;ENST00000543131.5_1_11:114310234-114320694:+|nuORF;ENST00000538403.5_1_11:114314877-114320694:+|nuORF;nc|ENSG00000076043|Q9Y3B8-2|REXO2;nc|ENSG00000076043|Q9Y3B8-3|REXO2;REXO2|p.I219Nfs*3|1|0.39|ENSG00000076043|chr11:114449909-114449910|-/A|frameshift_variant;ENSG00000076043|ENST00000265881|REXO2	ENST00000539333.5_1_11:114316741-114316810:+|nuORF	ENST00000539333.5_1_11:114316741-114316810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8165283203125	2	515.816399	1029.61824	1.6872	0.00087027	-1.5712	-0.00081043	0.116	5.9835E-05	515.8157185995991	26.607	0.15051	26.607	26.507	26.657	0					6	3	2	0	0	0	0.3269	1	9210	9210		47.96	0.30219	1	137520			33016	1554	22930	23005	33421	33421					0.10462004885698661
RIIDVSTVK	9	Unmodified	_RIIDVSTVK_					0	0	0		ENST00000539333.5_1_11:114316741-114316810:+|nuORF;ENST00000539788.5_1_11:114314891-114320694:+|nuORF;ENST00000538791.3_1_11:114315223-114320694:+|nuORF;ENST00000543131.5_1_11:114310234-114320694:+|nuORF;ENST00000538403.5_1_11:114314877-114320694:+|nuORF;nc|ENSG00000076043|Q9Y3B8-2|REXO2;nc|ENSG00000076043|Q9Y3B8-3|REXO2;REXO2|p.I219Nfs*3|1|0.39|ENSG00000076043|chr11:114449909-114449910|-/A|frameshift_variant;ENSG00000076043|ENST00000265881|REXO2	ENST00000539333.5_1_11:114316741-114316810:+|nuORF	ENST00000539333.5_1_11:114316741-114316810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.816650390625	2	515.816399	1029.61824	0.82324	0.00042464	-0.48611	-0.00025074	0.33714	0.0001739	515.8160332549097	26.585	0.11836	26.585	26.526	26.644	0					4	2	2	0	0	0	0.41958	1	9547	9547		40.058	2.8991	1	68633			33017	1554	22930	23005	33422	33422					0.10462004885698661
RIIEETLALK	10	Unmodified	_RIIEETLALK_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.363037109375	2	593.363713	1184.71287	1.3956	0.00082812	-0.81867	-0.00048577	0.57696	0.00034235	593.3633848948512	33.582	0.18557	33.582	33.448	33.634	0					7	4	2	0	0	0	0.4947	1	12857	12857		45.908	3.512	1	95754			33018	5558	22931	23006	33423	33423					0.1279051863702989
RIIEETLALK	10	Unmodified	_RIIEETLALK_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.36376953125	2	593.363713	1184.71287	0.078637	4.6661E-05	0.039633	2.3517E-05	0.11827	7.0177E-05	593.3637133240558	33.509	0.26876	33.509	33.399	33.667	0					11	5	3	0	0	0	0.10583	1	12757	12757		94.409	26.915	1	348980			33019	5558	22931	23006	33424	33424					0.1279051863702989
RIIEPLTSR	9	Unmodified	_RIIEPLTSR_					0	0	0		ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF;nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.8275756835938	2	542.827298	1083.64004	1.8354	0.00099629	-0.82657	-0.00044868	1.0088	0.0005476	542.826892290167	25.896	0.24334	25.896	25.744	25.988	0					8	4	2	0	0	0	0.3269	1	7823	7823		47.96	5.4851	1	93826			33020	5626	22932	23007	33425	33425					0.10156809634258934
RIIEPLTSR	9	Unmodified	_RIIEPLTSR_					0	0	0		ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF;nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.82763671875	2	542.827298	1083.64004	2.0812	0.0011297	-1.1114	-0.00060328	0.96982	0.00052644	542.8267691007434	25.936	0.2414	25.936	25.789	26.03	0					5	3	2	0	0	0	0.21419	1	8286	8286		59.931	15.554	1	75939			33021	5626	22932	23007	33426	33426					0.10156809634258934
RIIEPLTSR	9	Unmodified	_RIIEPLTSR_					0	0	0		ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF;nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.8275756835938	2	542.827298	1083.64004	0.61724	0.00033505	-0.14928	-8.1034E-05	0.46796	0.00025402	542.827221776595	26.085	0.31617	26.085	25.949	26.265	0					19	6	4	0	0	0	0.067603	1	9171	9171		89.029	16.15	1	676720			33022	5626	22932	23007	33427	33427					0.10156809634258934
RIIITTGIY	9	Unmodified	_RIIITTGIY_					0	0	0			REV__nc|ENSG00000168509|Q6ZVN8-3|HJV	REV__nc|ENSG00000168509|Q6ZVN8-3|HJV	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.320068359375	2	525.321317	1048.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.156	1	30.156	29.656	30.656	0								0	0	0	0.34228	1	9877	9877		26.796	1.222	1		+		33023	16265	22933	23008	33428	33428					0.10571192891075043
RIIKNEVKK	9	Unmodified	_RIIKNEVKK_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.5808410644531	3	376.580152	1126.71863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.164	1	15.164	14.664	15.664	0								0	0	0	0.19616	1	3857	3857		51.528	16.376	1				33024	7279	22934	23009	33429	33429					0.16033661939354715
RIISEAIAK	9	Unmodified	_RIISEAIAK_					0	0	0		CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;CHD9|p.F760Lfs*16|3|0.47|ENSG00000177200|chr16:53229088-53229088|T/-|frameshift_variant;CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant;CHD9|p.T582Nfs*6|2|0.19|ENSG00000177200|chr16:53209766-53209767|-/A|frameshift_variant;CHD9|p.T582Qfs*7|2|0.35|ENSG00000177200|chr16:53209767-53209767|A/-|frameshift_variant;CHD9|p.Y645Ifs*11|1|0.23|ENSG00000177200|chr16:53226394-53226395|-/A|frameshift_variant;CHD9|p.K703Rfs*7|1|0.22|ENSG00000177200|chr16:53227455-53227455|A/-|frameshift_variant	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.8108215332031	2	500.811116	999.60768	0.59492	0.00029794	-0.63471	-0.00031787	-0.039782	-1.9923E-05	500.8107530222167	23.695	0.15175	23.695	23.616	23.768	0					5	3	2	0	0	0	0.070005	1	7878	7878		88.177	28.059	1	161500			33025	508	22935	23010	33430	33430					0.10786022231263814
RIKASFSFND	10	Unmodified	_RIKASFSFND_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.8067626953125	2	592.806562	1183.59857	0.87274	0.00051737	-0.30314	-0.0001797	0.5696	0.00033767	592.8062304572982	30.957	0.26292	30.957	30.877	31.14	0					13	6	3	0	0	0	0.65408	1	11232	11232		29.17	9.1733	1	217000	+		33026	14367	22936	23011	33431	33431					0.01411628874939197
RIKCMKIL	8	Oxidation (M)	_RIKCM(Oxidation (M))KIL_		RIKCM(1)KIL		RIKCM(41)KIL	0	0	1		ZSWIM2|p.H173R|1|0.38|ENSG00000163012|chr2:186837531-186837531|T/C|missense_variant	ZSWIM2|p.H173R|1|0.38|ENSG00000163012|chr2:186837531-186837531|T/C|missense_variant	ZSWIM2|p.H173R|1|0.38|ENSG00000163012|chr2:186837531-186837531|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.8084716796875	2	510.806465	1019.59838	3.0671	0.0015667	0.0027166	1.3876E-06	3.0698	0.0015681	510.8065065226034	47.086	0.2755	47.086	46.977	47.253	0					23	12	3	0	0	0	0.65276	1	18797	18797		40.573	40.573	1	195530			33027	23179	22937	23012	33432	33432		834			0.08936214349739657
RIKGSIQRMKQ	11	Unmodified	_RIKGSIQRMKQ_					0	0	0		nc|ENSG00000150773|Q8WWB5-3|PIH1D2;nc|ENSG00000150773|Q8WWB5-2|PIH1D2;ENSG00000150773|ENST00000280350|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	672.90087890625	2	672.898263	1343.78197	2.4884	0.0016744	2.0272	0.0013641	4.5156	0.0030385	672.8993617989333	12.201	0.11588	12.201	12.122	12.238	0					5	3	2	0	0	0	0.71641	1	2552	2552		26.063	0.9374	1	50209			33028	4936	22938	23013	33433	33433					0.12383279384948764
RIKRCQQG	8	Unmodified	_RIKRCQQG_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7;ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9	ENSG00000044090|ENST00000265348|CUL7;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENSG00000044090|ENST00000265348|CUL7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.77703857421875	2	494.777085	987.539617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.714	1	24.714	24.214	25.214	0								0	0	0	1.7419	1	7336	7336		26.796	0	1				33029	1208;2753	22939	23014	33434	33434					0.045348740996246306
RILACGVAK	9	Carbamidomethyl (C)	_RILAC(Carbamidomethyl (C))GVAK_	RILAC(1)GVAK		RILAC(72)GVAK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2922058105469	2	494.292037	986.56952	-0.046501	-2.2985E-05	-0.62664	-0.00030974	-0.67314	-0.00033273	494.29196544117536	20.881	0.2037	20.881	20.797	21	0					17	7	4	0	0	0	0.13267	1	5650	5650		71.877	23.962	1	406530			33030	8070	22940	23015	33435	33435	353				0.07569813044960938
RILACGVAK	9	Carbamidomethyl (C)	_RILAC(Carbamidomethyl (C))GVAK_	RILAC(1)GVAK		RILAC(120)GVAK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2918395996094	2	494.292037	986.56952	0.76006	0.00037569	-0.95784	-0.00047345	-0.19778	-9.7763E-05	494.2915071548271	21.179	0.26942	21.179	21.093	21.362	0					12	6	2	0	0	0	0.019882	1	6684	6684		122.18	47.921	1	3302500			33031	8070	22940	23015	33436	33436	353				0.07569813044960938
RILACGVAK	9	Carbamidomethyl (C)	_RILAC(Carbamidomethyl (C))GVAK_	RILAC(1)GVAK		RILAC(90)GVAK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2917175292969	2	494.292037	986.56952	-0.046278	-2.2875E-05	-0.41667	-0.00020595	-0.46294	-0.00022883	494.2917782591978	21.087	0.11596	21.087	21.028	21.144	0					4	2	2	0	0	0	0.063823	1	6948	6948		90.37	40.345	1	250590			33032	8070	22940	23015	33437	33437	353				0.07569813044960938
RILACGVAK	9	Carbamidomethyl (C)	_RILAC(Carbamidomethyl (C))GVAK_	RILAC(1)GVAK		RILAC(130)GVAK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.291748046875	2	494.292037	986.56952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.1	1	21.1	20.6	21.6	0								0	0	0	0.00042866	1	6943	6943		131.03	45.672	1				33033	8070	22940	23015	33438	33438	353				0.07569813044960938
RILACGVAK	9	Carbamidomethyl (C)	_RILAC(Carbamidomethyl (C))GVAK_	RILAC(1)GVAK		RILAC(120)GVAK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2925720214844	2	494.292037	986.56952	0.21666	0.00010709	0.02879	1.4231E-05	0.24545	0.00012132	494.29219658498545	20.958	0.15741	20.958	20.893	21.05	0					6	4	2	0	0	0	0.019882	1	5999	5999		122.18	36.817	1	262800			33034	8070	22940	23015	33439	33439	353				0.07569813044960938
RILACGVAK	9	Carbamidomethyl (C)	_RILAC(Carbamidomethyl (C))GVAK_	RILAC(1)GVAK		RILAC(110)GVAK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2921142578125	2	494.292037	986.56952	-0.63353	-0.00031315	0.46877	0.00023171	-0.16476	-8.144E-05	494.2922493247697	21.102	0.31251	21.102	20.992	21.304	0					10	6	2	0	0	0	0.028876	1	6803	6803		110.12	38.824	1	2484500			33035	8070	22940	23015	33440	33440	353				0.07569813044960938
RILACGVAK	9	Carbamidomethyl (C)	_RILAC(Carbamidomethyl (C))GVAK_	RILAC(1)GVAK		RILAC(120)GVAK		0	1	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2918395996094	2	494.292037	986.56952	0.89827	0.00044401	-1.4276	-0.00070566	-0.52936	-0.00026166	494.29130421737375	21.085	0.21441	21.085	20.976	21.19	0					7	4	2	0	0	0	0.021961	1	6817	6817		118.74	44.768	1	3103400			33036	8070	22940	23015	33441	33441	353				0.07569813044960938
RILACGVAK	9	Unmodified	_RILACGVAK_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7813720703125	2	465.781305	929.548056	-0.17304	-8.0599E-05	-0.36451	-0.00016978	-0.53755	-0.00025038	465.78115039317584	22.803	0.22956	22.803	22.75	22.98	0					7	5	2	0	0	0	0.42902	1	6866	6866		39.253	7.298	1	63235			33037	8070	22940	23016	33442	33442					0.08046428016245954
RILACGVAK	9	Unmodified	_RILACGVAK_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7810363769531	2	465.781305	929.548056	-0.49434	-0.00023025	0.24708	0.00011508	-0.24726	-0.00011517	465.7814968730811	22.948	0.51362	22.948	22.839	23.352	0					17	10	2	0	0	0	0.19605	1	7718	7718		62.107	14.192	1	971730			33038	8070	22940	23016	33443	33443					0.08046428016245954
RILIPLDPN	9	Unmodified	_RILIPLDPN_					0	0	0			REV__ENSG00000131495|ENST00000252102|NDUFA2	REV__ENSG00000131495|ENST00000252102|NDUFA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.8192749023438	2	525.818941	1049.62333	1.3644	0.00071741	-0.89206	-0.00046906	0.47231	0.00024835	525.8184823029827	28.894	0.17009	28.894	28.789	28.96	0					8	5	2	0	0	0	0.34452	1	9072	9072		39.253	5.0803	1	66013	+		33039	14624	22941	23017	33444	33444					0.10050308748327552
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.8140563964844	2	486.813659	971.612765	1.2399	0.00060362	-0.49369	-0.00024034	0.74624	0.00036328	486.8134366270817	23.73	0.20965	23.73	23.633	23.842	0					14	7	3	0	0	0	0.073657	1	6906	6906		86.882	17.254	1	271560			33040	4496	22942	23018	33445	33445					0.12582326093900065
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.81378173828125	2	486.813659	971.612765	0.37963	0.00018481	-0.66158	-0.00032207	-0.28195	-0.00013726	486.81333355063407	24.032	0.32121	24.032	23.932	24.253	0					19	7	4	0	0	0	0.067603	1	8027	8027		89.029	14.774	1	2721500			33041	4496	22942	23018	33446	33446					0.12582326093900065
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.8138122558594	2	486.813659	971.612765	-0.084954	-4.1357E-05	-0.67543	-0.00032881	-0.76038	-0.00037017	486.8133286548466	23.971	0.46273	23.971	23.864	24.326	0					21	9	4	0	0	0	0.13109	1	8322	8322		72.243	0.94753	1	6298600			33042	4496	22942	23018	33447	33447					0.12582326093900065
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.8132629394531	2	486.813659	971.612765	0.41568	0.00020236	-0.72756	-0.00035419	-0.31188	-0.00015183	486.8132374615087	23.82	0.22405	23.82	23.725	23.949	0					12	5	3	0	0	0	0.061298	1	7318	7318		91.265	0.89541	1	480770			33043	4496	22942	23018	33448	33448					0.12582326093900065
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.81353759765625	2	486.813659	971.612765	-0.54425	-0.00026495	0.06349	3.0908E-05	-0.48076	-0.00023404	486.8136842785002	23.938	0.36637	23.938	23.829	24.196	0					22	7	5	0	0	0	0.029571	1	8197	8197		109.44	18.662	1	4968000			33044	4496	22942	23018	33449	33449					0.12582326093900065
RILSTVPCY	9	Unmodified	_RILSTVPCY_					0	0	0			REV__ENST00000298198.4_1_11:74043464-74043653:-|nuORF	REV__ENST00000298198.4_1_11:74043464-74043653:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2841186523438	2	526.283877	1050.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.806	1	33.806	33.306	34.306	0								0	0	0	0.28164	1	12972	12972		38.806	0	1		+		33045	18190	22943	23019	33450	33450					0.02994687088221326
RIMDYSKFA	9	Unmodified	_RIMDYSKFA_					0	0	0			REV__tr|U7STF2|U7STF2_FUSNUDUF1456familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01327PE=4SV=1	REV__tr|U7STF2|U7STF2_FUSNUDUF1456familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01327PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.7867431640625	2	565.786784	1129.55902	1.4091	0.00079728	-3.3283	-0.0018831	-1.9191	-0.0010858	565.7850491732178	31.812	0.17753	31.812	31.677	31.854	0					6	5	2	0	0	0	0.58342	1	11000	11000		23.523	3.5259	1	28645	+		33046	21914	22944	23020	33451	33451					-0.0005821440013278334
RINVPMVRK	9	Unmodified	_RINVPMVRK_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1;DLC1|p.S830Rfs*7|1|0.33|ENSG00000164741|chr8:13099850-13099850|G/-|frameshift_variant;DLC1|p.Q1096Sfs*33|1|0.29|ENSG00000164741|chr8:13095127-13095127|G/-|frameshift_variant	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.5626220703125	3	371.562216	1111.66482	0.78149	0.00029037	-2.042	-0.00075872	-1.2605	-0.00046835	371.56215119148993	23.366	0.65532	23.366	23.049	23.704	0					43	15	5	0	0	0	0.38666	1	7738	7738		42.864	11.796	1	450650			33047	5723	22945	23021	33452	33452					0.1134516623599211
RINVPMVRK	9	Unmodified	_RINVPMVRK_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1;DLC1|p.S830Rfs*7|1|0.33|ENSG00000164741|chr8:13099850-13099850|G/-|frameshift_variant;DLC1|p.Q1096Sfs*33|1|0.29|ENSG00000164741|chr8:13095127-13095127|G/-|frameshift_variant	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.5630798339844	3	371.562216	1111.66482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.274	1	23.274	22.774	23.774	0								0	0	0	0.27521	1	7869	7869		40.058	9.4893	1				33048	5723	22945	23021	33453	33453					0.1134516623599211
RINVPMVRK	9	Unmodified	_RINVPMVRK_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1;DLC1|p.S830Rfs*7|1|0.33|ENSG00000164741|chr8:13099850-13099850|G/-|frameshift_variant;DLC1|p.Q1096Sfs*33|1|0.29|ENSG00000164741|chr8:13095127-13095127|G/-|frameshift_variant	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.5622863769531	3	371.562216	1111.66482	0.78642	0.0002922	-3.2937	-0.0012238	-2.5073	-0.00093162	371.561972202127	23.292	0.90728	23.292	22.922	23.829	0					65	18	8	0	0	0	0.21263	1	7907	7907		60.118	12.159	1	839210			33049	5723	22945	23021	33454	33454					0.1134516623599211
RIPKLYEL	8	Unmodified	_RIPKLYEL_					0	0	0		ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.3153686523438	2	516.316035	1030.61752	-1.51	-0.00077963	2.3958	0.001237	0.88577	0.00045734	516.3169662332234	26.44	0.1898	26.44	26.319	26.509	0					7	4	2	0	0	0	0.66372	1	8516	8516		38.806	1.647	1	79258			33050	10194	22946	23022	33455	33455					0.10343210236646883
RIQEHFNKK	9	Unmodified	_RIQEHFNKK_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.5597229003906	3	400.55964	1198.65709	0.59996	0.00024032	-0.86966	-0.00034835	-0.2697	-0.00010803	400.5592734379138	15.247	0.11119	15.247	15.204	15.316	0					8	3	3	0	0	0	0.27249	1	3291	3291		59.931	8.7381	1	122970			33051	5211	22947	23023	33456	33456					0.06570730240059675
RIQEHFNKK	9	Unmodified	_RIQEHFNKK_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.5594787597656	3	400.55964	1198.65709	0.065121	2.6085E-05	-0.42603	-0.00017065	-0.36091	-0.00014457	400.5595019139962	15.543	0.36458	15.543	15.484	15.849	0					12	7	2	0	0	0	0.078509	1	4279	4279		81.525	36.503	1	681890			33052	5211	22947	23023	33457	33457					0.06570730240059675
RIQEHFNKK	9	Unmodified	_RIQEHFNKK_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.559814453125	3	400.55964	1198.65709	0.17303	6.931E-05	0.53687	0.00021505	0.7099	0.00028436	400.55992506211896	15.362	0.12093	15.362	15.278	15.399	0					5	3	2	0	0	0	0.44593	1	3436	3436		37.508	15.822	1	43890			33053	5211	22947	23023	33458	33458					0.06570730240059675
RIQEHFNKK	9	Unmodified	_RIQEHFNKK_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.55963134765625	3	400.55964	1198.65709	-0.60977	-0.00024425	0.65493	0.00026234	0.045167	1.8092E-05	400.55989276201535	15.505	0.34956	15.505	15.414	15.763	0					13	7	2	0	0	0	0.032052	1	4112	4112		112.11	46.642	1	966710			33054	5211	22947	23023	33459	33459					0.06570730240059675
RIQKSISQK	9	Unmodified	_RIQKSISQK_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.224365234375	3	363.224257	1086.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.539	1	14.539	14.039	15.039	0								0	0	0	0.22284	1	3791	3791		54.722	19.104	1				33055	5655	22948	23024	33460	33460					0.11108212008548435
RIQLPVVSK	9	Unmodified	_RIQLPVVSK_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3349609375	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.005	1	31.005	30.505	31.505	0								0	0	0	0.28191	1	11242	11242		39.253	6.4404	1				33056	4850	22949	23025	33461	33461					0.13718301502262875
RIQLPVVSK	9	Unmodified	_RIQLPVVSK_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.33447265625	2	520.334759	1038.65496	1.1047	0.00057483	-0.61264	-0.00031878	0.4921	0.00025605	520.3343978807656	30.872	0.78593	30.872	30.416	31.202	0					35	17	3	0	0	0	0.13907	2	11494	11494;11683		72.879	28.762	1	336710			33057	4850	22949	23025	33462;33463	33462					0.13718301502262875
RIQLPVVSK	9	Unmodified	_RIQLPVVSK_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.8367309570312	2	520.334759	1038.65496	0.33729	0.0001755	0.29424	0.0001531	0.63152	0.0003286	520.3349515177674	30.98	0.56442	30.98	30.529	31.093	0					27	11	3	0	0	0	0.43488	1	11381	11381		39.253	0	1	140070			33058	4850	22949	23025	33464	33464					0.13718301502262875
RIRRNERF	8	Unmodified	_RIRRNERF_					0	0	0			REV__nc|ENSG00000121289|Q96ST8-2|CEP89	REV__nc|ENSG00000121289|Q96ST8-2|CEP89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.835693359375	2	573.83378	1145.65301	1.9778	0.0011349	1.0833	0.00062162	3.061	0.0017565	573.8343844641573	37.39	0.66205	37.39	37.191	37.853	0					40	20	3	0	0	0	0.5535	1	14592	14592		44.117	9.9443	1	435940	+		33059	14308	22950	23026	33465	33465					0.08600685537021491
RIRVSPGG	8	Unmodified	_RIRVSPGG_					0	0	0		ENST00000477936.2_1_12:8613363-8613591:+|nuORF	ENST00000477936.2_1_12:8613363-8613591:+|nuORF	ENST00000477936.2_1_12:8613363-8613591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.25347900390625	2	421.253769	840.492984	-0.91977	-0.00038745	0.40145	0.00016911	-0.51832	-0.00021834	421.25390119708425	48.689	0.19472	48.689	48.638	48.832	0					17	12	2	0	0	0	0.79719	1	17675	17675		18.324	0	1	45900			33060	9924	22951	23027	33466	33466					0.06635757539993392
RISESGIKK	9	Unmodified	_RISESGIKK_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.87322998046875	3	339.873224	1016.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.936	1	15.936	15.436	16.436	0								0	0	0	0.33029	1	4220	4220		29.551	16.097	1				33061	3727	22952	23028	33467	33467					0.09020834225896124
RISESGIKK	9	Unmodified	_RISESGIKK_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.8730773925781	3	339.873224	1016.59784	0.36583	0.00012434	-0.59238	-0.00020133	-0.22655	-7.6997E-05	339.87310010804634	15.841	0.25957	15.841	15.686	15.946	0					6	5	2	0	0	0	0.40353	1	4426	4426		34.087	6.2043	1	76427			33062	3727	22952	23028	33468	33468					0.09020834225896124
RISHWTATK	9	Unmodified	_RISHWTATK_					0	0	0		ENST00000337451.7_1_15:23034209-23034353:-|nuORF	ENST00000337451.7_1_15:23034209-23034353:-|nuORF	ENST00000337451.7_1_15:23034209-23034353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3042602539062	2	550.30399	1098.59343	1.8343	0.0010094	-1.6839	-0.00092667	0.15041	8.2772E-05	550.3030894774682	18.174	0.22701	18.174	18.082	18.309	0					9	5	3	0	0	0	0.02953	1	5281	5281		109.48	47.371	1	343310			33063	8706	22953	23029	33469	33469					0.04807369802983885
RISIVYEK	8	Unmodified	_RISIVYEK_					0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2982482910156	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.831	1	21.831	21.331	22.331	0								0	0	0	1.7419	1	6074	6074		29.15	1.2673	1		+		33064	14759	22954	23030	33470	33470					0.0781033333993264
RISRWRSKY	9	Unmodified	_RISRWRSKY_					0	0	0			REV__ENST00000505284.5_1_4:128842916-128886288:-|nuORF	REV__ENST00000505284.5_1_4:128842916-128886288:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	626.3564453125	2	626.357088	1250.69962	-2.1327	-0.0013358	1.0934	0.00068486	-1.0393	-0.00065098	626.3577585546884	22.513	0.19816	22.513	22.407	22.605	0					7	4	2	0	0	0	0.11411	1	6728	6728		76.17	33.305	1	317950	+		33065	15957	22955	23031	33471	33471					0.08430125368317931
RISSNPVAK	9	Unmodified	_RISSNPVAK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2849426269531	2	486.285266	970.555979	0.36918	0.00017953	-1.1223	-0.00054574	-0.75308	-0.00036621	486.2847476834689	17.037	0.1364	17.037	16.952	17.088	0					8	3	3	0	0	0	0.032383	1	4727	4727		106.68	15.906	1	504050			33066	6453	22956	23032	33472	33472					0.06952278537369239
RITGPLNQ	8	Unmodified	_RITGPLNQ_					0	0	0		ENST00000472942.5_1_9:133986989-133989557:+|nuORF	ENST00000472942.5_1_9:133986989-133989557:+|nuORF	ENST00000472942.5_1_9:133986989-133989557:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.7584228515625	2	449.758884	897.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.62	1	11.62	11.12	12.12	0								0	0	0	1.7419	1	2277	2277		24.203	0	1				33067	9872	22957	23033	33473	33473					0.05036320474562217
RIVDYLLEK	9	Unmodified	_RIVDYLLEK_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.837158203125	2	574.837331	1147.66011	0.15558	8.9434E-05	0.17501	0.0001006	0.33059	0.00019004	574.8373163479351	37.952	0.203	37.952	37.852	38.055	0					6	4	2	0	0	0	0.44949	1	14891	14891		37.508	5.9784	1	108830			33068	4676	22958	23034	33474	33474					0.09218560574208823
RIVLSNMRMQ	10	Unmodified	_RIVLSNMRMQ_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	624.3409423828125	2	624.339192	1246.66383	3.162	0.0019741	-0.35057	-0.00021888	2.8114	0.0017553	624.3388722094646	25.642	0.30596	25.642	25.531	25.837	0					9	4	3	0	0	0	0.2978	1	9014	9014		67.494	0	1	1311700			33069	4633	22959	23035	33475	33475					0.05036583804781003
RIVPIKVTG	9	Unmodified	_RIVPIKVTG_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.8228454589844	2	491.824027	981.633501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.682	1	11.682	11.182	12.182	0								0	0	0	0.38123	1	2453	2453		16.473	3.514	1		+		33070	15001	22960	23036	33476	33476					0.1419491647355926
RIVYSLEK	8	Unmodified	_RIVYSLEK_					0	0	0			REV__ENST00000459872.1_1_6:10557103-10619499:+|nuORF	REV__ENST00000459872.1_1_6:10557103-10619499:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.29608154296875	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.396	1	29.396	28.896	29.896	0								0	0	0	1.7419	1	9565	9565		51.335	0	1		+		33071	19359	22961	23037	33477	33477					0.0781033333993264
RIYDIFRSK	9	Unmodified	_RIYDIFRSK_					0	0	0		nc|ENSG00000133805|Q01432-6|AMPD3;nc|ENSG00000133805|Q01432-3|AMPD3;ENSG00000133805|ENST00000396553|AMPD3;nc|ENSG00000133805|Q01432-5|AMPD3;nc|ENSG00000133805|Q01432-4|AMPD3	nc|ENSG00000133805|Q01432-6|AMPD3	nc|ENSG00000133805|Q01432-6|AMPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.89599609375	3	399.89614	1196.66659	-0.61465	-0.00024579	0.71229	0.00028484	0.097648	3.9049E-05	399.896427684765	31.182	0.75894	31.182	31.027	31.786	0					24	15	2	0	0	0	0.19891	1	11622	11622		61.765	34.717	1	252410			33072	3871	22962	23038	33478	33478					0.07612498525600131
RIYPELLK	8	Unmodified	_RIYPELLK_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.3145751953125	2	516.316035	1030.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.756	1	21.756	21.256	22.256	0								0	0	0	1.7419	1	6364	6364		40.778	0.20554	1				33073	5731	22963	23039	33479	33479					0.10343210236646883
RIYRNGKKFEA	11	Unmodified	_RIYRNGKKFEA_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2608337402344	3	461.261482	1380.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.272	1	17.272	16.772	17.772	0								0	0	0	0.33523	1	4299	4299		47.228	16.659	1		+		33074	17452	22964	23040	33480	33480					0.08746646365693778
RKAAKVLE	8	Unmodified	_RKAAKVLE_					0	0	0		nc|ENSG00000178217|Q5SQS7-3|SH2D4B;SH2D4B|p.W326Gfs*34|1|0.29|ENSG00000178217|chr10:80609537-80609537|C/-|frameshift_variant;nc|ENSG00000178217|Q5SQS7-2|SH2D4B;nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.79205322265625	2	457.792727	913.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.388	1	20.388	19.888	20.888	0								0	0	0	1.7419	1	6317	6317		38.806	4.8845	1				33075	6708	22965	23041	33481	33481					0.11065770405366493
RKACINCEY	9	Unmodified	_RKACINCEY_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.257080078125	2	550.254794	1098.49503	3.7458	0.0020611	0.1664	9.156E-05	3.9122	0.0021527	550.2547635256699	29.509	0.45778	29.509	29.324	29.781	0					29	9	4	0	0	0	0.32741	1	10796	10796		47.916	1.9434	1	1365600	+		33076	16296	22966	23042	33482	33482					-0.05027317828739797
RKAPGLHFW	9	Unmodified	_RKAPGLHFW_					0	0	0			REV__ENST00000240487.5_2_4:154556692-154557535:+|nuORF	REV__ENST00000240487.5_2_4:154556692-154557535:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.3111572265625	2	556.311618	1110.60868	0.11548	6.4244E-05	-0.71457	-0.00039752	-0.59909	-0.00033328	556.3112842301344	32.142	0.25181	32.142	32.072	32.324	0					13	11	2	0	0	0	0.48389	1	10696	10696		26.796	0	1	95753	+		33077	17929	22967	23043	33483	33483					0.05780281390843811
RKAQQVGQ	8	Unmodified	_RKAQQVGQ_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7616882324219	2	457.761958	913.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.98	1	15.98	15.48	16.48	0								0	0	0	1.7419	1	4239	4239		33.516	0.70317	1		+		33078	14120	22968	23044	33484	33484					0.049148387060995447
RKCSRSSRY	9	Unmodified	_RKCSRSSRY_					0	0	0			REV__ENST00000196371.9_1_5:41862769-41870602:-|nuORF	REV__ENST00000196371.9_1_5:41862769-41870602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7954711914062	2	571.796006	1141.57746	0.16113	9.2132E-05	-0.726	-0.00041512	-0.56487	-0.00032299	572.2974837725644	31.263	0.16238	31.263	31.174	31.336	0					6	3	2	0	0	0	0.51991	1	11669	11669		30.318	2.4355	1	65344	+		33079	17868	22969	23045	33485	33485					0.012333402944477712
RKDHKIGY	8	Unmodified	_RKDHKIGY_					0	0	0		SLC51A|p.V324I|1|0.29|ENSG00000163959|chr3:196233146-196233146|G/A|missense_variant	SLC51A|p.V324I|1|0.29|ENSG00000163959|chr3:196233146-196233146|G/A|missense_variant	SLC51A|p.V324I|1|0.29|ENSG00000163959|chr3:196233146-196233146|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7872619628906	2	508.785433	1015.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.735	1	16.735	16.235	17.235	0								0	0	0	1.7419	1	4694	4694		20.482	1.1219	1				33080	22416	22970	23046	33486	33486					0.04915698257229906
RKDIYSAP	8	Unmodified	_RKDIYSAP_					0	0	0			REV__SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant	REV__SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.25848388671875	2	475.258717	948.50288	0.31909	0.00015165	-0.99459	-0.00047269	-0.6755	-0.00032104	475.25814631846526	28.335	0.29292	28.335	28.165	28.458	0					17	7	3	0	0	0	0.65276	1	10015	10015		40.573	1.7665	1	319740	+		33081	13865	22971	23047	33487	33487					0.026569007546981993
RKDQTQPA	8	Unmodified	_RKDQTQPA_					0	0	0			REV__NPAS1|p.G460D|1|0.34|ENSG00000130751|chr19:47045257-47045257|G/A|missense_variant	REV__NPAS1|p.G460D|1|0.34|ENSG00000130751|chr19:47045257-47045257|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2510986328125	2	472.251423	942.488293	0.61275	0.00028937	-1.2154	-0.00057396	-0.6026	-0.00028458	472.250919245181	19.64	0.15581	19.64	19.492	19.647	0					5	3	2	0	0	0	0.7126	1	5950	5950		31.955	0.42505	1	135550	+		33082	21301	22972	23048	33488	33488					0.014748286065696448
RKEAAGTGK	9	Unmodified	_RKEAAGTGK_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2615051269531	2	459.261791	916.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.046	1	14.046	13.546	14.546	0								0	0	0	0.22075	1	3406	3406		47.96	1.5027	1				33083	1621	22973	23049	33489	33489					0.047434189862428866
RKEGRKERKK	10	Unmodified	_RKEGRKERKK_					0	0	0		nc|ENSG00000135119|Q96EX2-2|RNFT2	nc|ENSG00000135119|Q96EX2-2|RNFT2	nc|ENSG00000135119|Q96EX2-2|RNFT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	657.9088745117188	2	657.907476	1313.8004	2.7162	0.001787	-0.57877	-0.00038078	2.1374	0.0014062	657.9070277859653	16.123	0.26933	16.123	16.014	16.283	0					10	5	3	0	0	0	0.19797	1	4410	4410		79.713	79.713	1	1458600			33084	11534	22974	23050	33490	33490					0.15605157351137677
RKETHTRCSY	10	Unmodified	_RKETHTRCSY_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	640.8123168945312	2	640.811853	1279.60915	-0.10531	-6.7483E-05	-0.53565	-0.00034325	-0.64096	-0.00041074	640.8116356001166	39.242	0.19302	39.242	39.124	39.317	0					7	4	2	0	0	0	0.59277	1	15493	15493		35.152	2.3396	1	59617	+		33085	15344	22975	23051	33491	33491					-0.01946711742266416
RKETRFEEGEQ	11	Unmodified	_RKETRFEEGEQ_					0	0	0		nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	704.844482421875	2	704.844404	1407.67426	0.24379	0.00017183	-0.14471	-0.000102	0.099076	6.9833E-05	704.8442959262942	23.686	0.42778	23.686	23.468	23.895	0					51	16	5	0	0	0	0.68382	1	6832	6832		29.17	29.17	1	1559900			33086	6991	22976	23052	33492	33492					-0.013274387354158534
RKETRFEEGEQ	11	Unmodified	_RKETRFEEGEQ_					0	0	0		nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	704.8439331054688	2	704.844404	1407.67426	1.41	0.00099384	-1.1499	-0.00081051	0.26011	0.00018334	704.8435216035452	23.712	0.29454	23.712	23.533	23.827	0					29	10	4	0	0	0	0.77123	1	7112	7112		20.837	2.5751	1	736950			33087	6991	22976	23052	33493	33493					-0.013274387354158534
RKFQCAKK	8	Unmodified	_RKFQCAKK_					0	0	0			REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4	REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7928161621094	2	504.792204	1007.56985	-0.052707	-2.6606E-05	0.97519	0.00049227	0.92248	0.00046566	504.7928716780644	14.011	0.28997	14.011	13.771	14.061	0					15	7	3	0	0	0	0.65276	1	3330	3330		40.573	1.7665	1	418580	+		33088	13618	22977	23053	33494	33494					0.066372327648196
RKHLAPNLS	9	Unmodified	_RKHLAPNLS_					0	0	0		ENST00000402966.1_1_22:42093436-42094048:+|nuORF	ENST00000402966.1_1_22:42093436-42094048:+|nuORF	ENST00000402966.1_1_22:42093436-42094048:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.3070068359375	2	518.306532	1034.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.514	1	17.514	17.014	18.014	0								0	0	0	0.21054	1	5066	5066		49.442	5.7908	1				33089	9259	22978	23054	33495	33495					0.08259673665611444
RKIKKLSETFD	11	Unmodified	_RKIKKLSETFD_					0	0	0			REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	682.8958740234375	2	682.898451	1363.78235	-1.6551	-0.0011303	-1.4165	-0.00096732	-3.0716	-0.0020976	682.896745701579	40.6	0.10745	40.6	40.509	40.617	0					6	4	2	0	0	0	0.76233	1	15999	15999		21.686	0	1	53457	+		33090	12937	22979	23055	33496	33496					0.11500977585797045
RKITGQAGW	9	Unmodified	_RKITGQAGW_					0	0	0		ENST00000580048.1_1_18:72263866-72264067:-|nuORF	ENST00000580048.1_1_18:72263866-72264067:-|nuORF	ENST00000580048.1_1_18:72263866-72264067:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7872619628906	2	508.785433	1015.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.773	1	16.773	16.273	17.273	0								0	0	0	0.21054	1	4614	4614		49.442	3.4896	1				33091	10866	22980	23056	33497	33497					0.04915698257229906
RKKRMILHFW	10	Unmodified	_RKKRMILHFW_					0	0	0		ENST00000454295.6_1_5:68736280-68737401:+|nuORF	ENST00000454295.6_1_5:68736280-68737401:+|nuORF	ENST00000454295.6_1_5:68736280-68737401:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2820739746094	3	472.279931	1413.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.587	1	40.587	40.087	41.087	0								0	0	0	0.3805	1	16126	16126		36.447	10.383	1				33092	9673	22981	23057	33498	33498					0.12760781352471895
RKKRTCPQ	8	Unmodified	_RKKRTCPQ_					0	0	0			REV__ENST00000560813.2_1_15:62352823-62352949:+|nuORF	REV__ENST00000560813.2_1_15:62352823-62352949:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.791748046875	2	508.792735	1015.57092	-1.8787	-0.00095586	1.1575	0.00058893	-0.72118	-0.00036693	508.79322986137873	42.379	0.34418	42.379	42.21	42.554	0					33	20	2	0	0	0	0.72381	1	14788	14788		30.504	1.3541	1	75793	+		33093	20287	22982	23058	33499	33499					0.06375447133723355
RKLELSQQ	8	Unmodified	_RKLELSQQ_					0	0	0			REV__TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant	REV__TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.28985595703125	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.655	1	16.655	16.155	17.155	0								0	0	0	1.7419	1	3832	3832		37.159	8.0096	1		+		33094	14587	22983	23059	33500	33500					0.06628261191815454
RKLGEDIIK	9	Unmodified	_RKLGEDIIK_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.3304443359375	2	536.329673	1070.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.055	1	13.055	12.555	13.555	0								0	0	0	0.27025	1	3088	3088		40.778	1.5253	1		+		33095	16433	22984	23060	33501	33501					0.11229693777045213
RKLLKLLKYLL	11	Unmodified	_RKLLKLLKYLL_					0	0	0		ENST00000545279.5_1_5:135468581-135489282:+|nuORF;ENST00000509297.5_1_5:135469533-135483594:+|nuORF	ENST00000545279.5_1_5:135468581-135489282:+|nuORF	ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	700.6563720703125	2	700.989415	1399.96428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.123	1	16.123	15.623	16.623	0								0	0	0	0.45674	1	3619	3619		0	0	1				33096	10222	22985	23061	33502	33502					0.28029362069355557
RKLLLFKTKFI	11	Unmodified	_RKLLLFKTKFI_					0	0	0			REV__ENST00000265404.6_1_4:68472071-68472191:+|nuORF	REV__ENST00000265404.6_1_4:68472071-68472191:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	703.9660034179688	2	703.96594	1405.91733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.636	1	42.636	42.136	43.136	0								0	0	0	0.45674	1	17028	17028		9.1829	0	1		+		33097	18077	22986	23062	33503	33503					0.23060502518205794
RKLQTTKK	8	Unmodified	_RKLQTTKK_					0	0	0			REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.82373046875	2	501.824558	1001.63456	0.14313	7.1826E-05	-0.20121	-0.00010097	-0.058077	-2.9145E-05	501.8244778406308	11.628	0.49098	11.628	11.586	12.077	0					38	28	2	0	0	0	0.78978	1	2308	2308		21.96	1.9631	1	2799000	+		33098	15609	22987	23063	33504	33504					0.13381130842446964
RKMDPLKLY	9	Unmodified	_RKMDPLKLY_					0	0	0			REV__ENST00000482108.1_2_7:94296640-94296796:+|nuORF	REV__ENST00000482108.1_2_7:94296640-94296796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.3358764648438	2	582.333901	1162.65325	-0.32484	-0.00018917	3.839	0.0022356	3.5142	0.0020464	582.3359019261216	17.089	0.16869	17.089	16.98	17.149	0					5	3	2	0	0	0	0.20551	1	5029	5029		60.972	0.85368	1	127520	+		33099	19608	22988	23064	33505	33505					0.0784292442201604
RKMGSFKK	8	Unmodified	_RKMGSFKK_					0	0	0		ENSG00000182957|ENST00000382108|SPATA13;ENST00000466831.2_1_13:24796959-24798912:+|nuORF	ENSG00000182957|ENST00000382108|SPATA13	ENSG00000182957|ENST00000382108|SPATA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2872009277344	2	491.286754	980.558955	-0.52719	-0.000259	1.1288	0.00055459	0.60166	0.00029559	491.287317415198	13.856	0.16676	13.856	13.809	13.976	0					8	4	3	0	0	0	0.63077	1	3252	3252		44.117	6.9577	1	446450			33100	6929	22989	23065	33506	33506					0.06789830390539464
RKMQGKVQ	8	Unmodified	_RKMQGKVQ_					0	0	0			REV__ENST00000503420.5_2_6:31125808-31125901:-|nuORF	REV__ENST00000503420.5_2_6:31125808-31125901:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.78515625	2	487.781836	973.549119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.027	1	14.027	13.527	14.527	0								0	0	0	1.7419	1	2971	2971		25.45	0	1		+		33101	19818	22990	23066	33507	33507					0.06128642385169769
RKNLKMGF	8	Unmodified	_RKNLKMGF_					0	0	0		ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.28662109375	2	497.286754	992.558955	-1.3613	-0.00067698	1.1763	0.00058498	-0.185	-9.1999E-05	497.2874559540445	12.957	0.087157	12.957	12.932	13.019	0					5	3	2	0	0	0	0.78318	1	2618	2618		9.4706	0	1	67302			33102	9099	22991	23067	33508	33508					0.06237830390546151
RKNPKGFKE	9	Unmodified	_RKNPKGFKE_					0	0	0			REV__ENSG00000112273|ENST00000510882|HDGFL1	REV__ENSG00000112273|ENST00000510882|HDGFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.5477294921875	3	368.548852	1102.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.313	1	16.313	15.813	16.813	0								0	0	0	0.39567	1	3841	3841		12.207	0.69566	1		+		33103	13996	22992	23068	33509	33509					0.07751942837080605
RKNVLTHC	8	Unmodified	_RKNVLTHC_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.76611328125	2	485.766186	969.517819	-1.2389	-0.00060184	0.61791	0.00030016	-0.62103	-0.00030168	485.7666988814806	17.013	1.7586	17.013	16.744	18.503	0					94	59	3	0	0	0	0.65276	1	4282	4282		40.573	3.5441	1	318840			33104	2576	22993	23069	33510	33510					0.031840693510503115
RKNYEHSKIQ	10	Unmodified	_RKNYEHSKIQ_					0	0	0			REV__CENPF|p.E663K|1|0.42|ENSG00000117724|chr1:214640325-214640325|G/A|missense_variant	REV__CENPF|p.E663K|1|0.42|ENSG00000117724|chr1:214640325-214640325|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	651.8492431640625	2	651.849293	1301.68403	-0.83716	-0.0005457	0.34776	0.00022668	-0.4894	-0.00031902	651.8490360833943	31.161	0.078079	31.161	31.089	31.167	0					6	3	2	0	0	0	0.56063	1	10288	10288		38.754	8.4359	1	72483	+		33105	12420	22994	23070	33511	33511					0.04525794060600674
RKNYEHSKIQ	10	Unmodified	_RKNYEHSKIQ_					0	0	0			REV__CENPF|p.E663K|1|0.42|ENSG00000117724|chr1:214640325-214640325|G/A|missense_variant	REV__CENPF|p.E663K|1|0.42|ENSG00000117724|chr1:214640325-214640325|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	651.8480834960938	2	651.849293	1301.68403	-2.4073	-0.0015692	1.5502	0.0010105	-0.85705	-0.00055866	651.8500812894317	31.162	0.20712	31.162	31.059	31.266	0					12	6	3	0	0	0	0.4287	1	10676	10676		53.089	13.836	1	269420	+		33106	12420	22994	23070	33512	33512					0.04525794060600674
RKPALVGVDF	10	Unmodified	_RKPALVGVDF_					0	0	0			REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF	REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.8836364746094	3	367.885353	1100.63423	0.35869	0.00013196	-4.4521	-0.0016379	-4.0934	-0.0015059	367.883796057215	22.179	0.23469	22.179	22.127	22.362	0					7	5	2	0	0	0	0.64162	1	6573	6573		29.17	1.2878	1	68414	+		33107	18271	22995	23071	33513	33513					0.08793711122621062
RKPILFDAK	9	Unmodified	_RKPILFDAK_					0	0	0		tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.3336181640625	2	544.334759	1086.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.242	1	14.242	13.742	14.742	0								0	0	0	0.29356	1	3048	3048		29.15	0	1				33108	22778	22996	23072	33514	33514					0.11510301502266884
RKQAVGPGG	9	Unmodified	_RKQAVGPGG_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000596424.1_1_19:50360315-50362048:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.25091552734375	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.886	1	45.886	45.386	46.386	0								0	0	0	0.28164	1	14729	14729		38.806	3.1879	1				33109	2322	22997	23073	33515	33515					0.04839453677391248
RKQLDISWKFK	11	Unmodified	_RKQLDISWKFK_					0	0	0			REV__ENSG00000164951|ENST00000297598|PDP1	REV__ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.6158447265625	3	483.617266	1447.82997	-0.098073	-4.743E-05	-2.4893	-0.0012039	-2.5874	-0.0012513	483.6159627325217	17.358	0.24945	17.358	17.268	17.517	0					6	5	2	0	0	0	0.79011	1	5157	5157		17.167	0.63689	1	96319	+		33110	16014	22998	23074	33516	33516					0.12396676576622667
RKQLYNTREIK	11	Unmodified	_RKQLYNTREIK_					0	0	0			REV__ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant	REV__ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.6151428222656	3	483.615925	1447.82595	0.024551	1.1873E-05	-1.5684	-0.00075853	-1.5439	-0.00074665	483.61509058206394	17.097	0.11387	17.097	17.039	17.152	0					7	3	3	0	0	0	0.80453	1	4015	4015		14.086	1.1285	1	44406	+		33111	12236	22999	23075	33517	33517					0.11994587082926955
RKRRFQLYRSM	11	Unmodified	_RKRRFQLYRSM_					0	0	0		nc|ENSG00000205238|Q495Y8-2|SPDYE2;nc|ENSG00000136206|Q8NFV5|SPDYE1;ENSG00000136206|ENST00000693451|SPDYE1;ENSG00000205238|ENST00000691607|SPDYE2;ENSG00000173678|ENST00000507450|SPDYE2B	nc|ENSG00000205238|Q495Y8-2|SPDYE2	nc|ENSG00000205238|Q495Y8-2|SPDYE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	770.9340209960938	2	770.935711	1539.85687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.993	1	40.993	40.493	41.493	0								0	0	0	0.45674	1	16120	16120		9.1829	0	1				33112	4062	23000	23076	33518	33518					0.10853461916190099
RKRSNGKK	8	Unmodified	_RKRSNGKK_					0	0	0		ENST00000598953.1_1_19:52264477-52266695:+|nuORF	ENST00000598953.1_1_19:52264477-52266695:+|nuORF	ENST00000598953.1_1_19:52264477-52266695:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.3053894042969	2	487.304324	972.594095	2.554	0.0012446	-0.14743	-7.1843E-05	2.4066	0.0011727	487.3041867103716	23.361	0.21577	23.361	23.252	23.467	0					10	4	3	0	0	0	0.32815	1	7921	7921		79.451	0	1	2295700			33113	11020	23001	23077	33519	33519					0.10670209242709916
RKSADPKR	8	Unmodified	_RKSADPKR_					0	0	0		ENST00000527561.5_1_8:144766681-144776697:+|nuORF;ENST00000532486.5_1_8:144774355-144776697:+|nuORF;ENSG00000181135|ENST00000358656|ZNF707	ENST00000527561.5_1_8:144766681-144776697:+|nuORF	ENST00000527561.5_1_8:144766681-144776697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2829895019531	2	479.283057	956.551562	-0.002881	-1.3808E-06	-0.21156	-0.0001014	-0.21444	-0.00010278	479.28278774530156	18.905	0.15388	18.905	18.813	18.967	0					9	4	3	0	0	0	0.53424	1	4780	4780		56.721	1.9447	1	219710			33114	6839	23002	23078	33520	33520					0.0715481411446035
RKTEVLRRRQQ	11	Unmodified	_RKTEVLRRRQQ_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.6309509277344	3	490.630569	1468.86988	0.81762	0.00040115	0.18993	9.3188E-05	1.0076	0.00049434	490.6306885387956	12.087	0.11654	12.087	12.007	12.124	0					5	4	2	0	0	0	0.80453	1	2479	2479		14.086	0	1	52899	+		33115	14170	23003	23079	33521	33521					0.15419616299914196
RKTGHFVQR	9	Unmodified	_RKTGHFVQR_					0	0	0		ENST00000434748.2_2_12:133160750-133160867:+|nuORF	ENST00000434748.2_2_12:133160750-133160867:+|nuORF	ENST00000434748.2_2_12:133160750-133160867:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8231201171875	2	564.822881	1127.63121	0.74559	0.00042113	-1.0133	-0.00057234	-0.26772	-0.00015121	564.8221462102457	32.619	0.17022	32.619	32.531	32.701	0					8	4	2	0	0	0	0.42902	1	12404	12404		39.253	1.4413	1	92867			33116	9519	23004	23080	33522	33522					0.0724988078845854
RKTIIWQP	8	Unmodified	_RKTIIWQP_					0	0	0			REV__nc|ENSG00000153303|Q8N878-2|FRMD1	REV__nc|ENSG00000153303|Q8N878-2|FRMD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2647094726562	2	521.313826	1040.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.906	1	12.906	12.406	13.406	0								0	0	0	1.7419	1	2865	2865		42.396	1.8235	1		+		33117	15539	23005	23081	33523	33523					0.09441745813751368
RKTLIEGA	8	Unmodified	_RKTLIEGA_					0	0	0			REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant	REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.268798828125	2	444.269084	886.523616	0.58863	0.00026151	-1.1225	-0.00049869	-0.53388	-0.00023719	444.2685626587392	21.964	0.39743	21.964	21.823	22.221	0					23	9	4	0	0	0	0.26922	1	7053	7053		143.02	4.7771	1	16935000	+		33118	12032	23006	23082	33524	33524					0.07581491134374119
RKVNLLNPA	9	Unmodified	_RKVNLLNPA_					0	0	0			REV__nc|ENSG00000165525|O60524-4|NEMF	REV__nc|ENSG00000165525|O60524-4|NEMF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.8159790039062	2	512.816733	1023.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.85	1	11.85	11.35	12.35	0								0	0	0	0.28996	1	2371	2371		37.159	6.6555	1		+		33119	16049	23007	23083	33525	33525					0.10804844325411977
RKVTINAMK	9	Unmodified	_RKVTINAMK_					0	0	0			REV__TJP3|p.P829Afs*7|1|0.33|ENSG00000105289|chr19:3747948-3747949|-/G|frameshift_variant	REV__TJP3|p.P829Afs*7|1|0.33|ENSG00000105289|chr19:3747948-3747949|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.8189697265625	2	530.818418	1059.62228	1.9762	0.001049	-1.5876	-0.0008427	0.38866	0.00020631	530.8177044535356	17.366	0.10119	17.366	17.314	17.415	0					4	2	2	0	0	0	0.21263	1	4897	4897		60.118	0	1	90609	+		33120	13766	23008	23084	33526	33526					0.09485771107779328
RKWREAGM	8	Unmodified	_RKWREAGM_					0	0	0		ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2717895507812	2	517.271635	1032.52872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.056	1	24.056	23.556	24.556	0								0	0	0	1.7419	1	7309	7309		40.573	7.7602	1				33121	4664	23009	23085	33527	33527					0.013754717253505078
RKYPEIYALKC	11	Unmodified	_RKYPEIYALKC_					0	0	0			REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.9206848144531	3	461.919957	1382.73804	0.80977	0.00037405	0.38038	0.00017571	1.1901	0.00054975	461.9201577973842	26.645	0.57046	26.645	26.282	26.852	0					32	11	4	0	0	0	0.67983	1	9403	9403		29.551	0	1	1062900	+		33122	14688	23010	23086	33528	33528					0.06198250167949482
RLAALGQLHG	10	Unmodified	_RLAALGQLHG_					0	0	0		ENST00000494995.5_1_1:155580896-155583988:+|nuORF	ENST00000494995.5_1_1:155580896-155583988:+|nuORF	ENST00000494995.5_1_1:155580896-155583988:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.3070068359375	2	518.306532	1034.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.293	1	17.293	16.793	17.793	0								0	0	0	0.4201	1	4097	4097		20.947	0	1				33123	10104	23011	23087	33529	33529					0.08259673665611444
RLAAVAEL	8	Unmodified	_RLAAVAEL_					0	0	0			REV__ENST00000481869.1_1_1:934427-935027:-|nuORF	REV__ENST00000481869.1_1_1:934427-935027:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.7562255859375	2	421.758352	841.502152	-0.2016	-8.5027E-05	-1.5229	-0.00064231	-1.7245	-0.00072734	421.75762011229125	33.964	0.28228	33.964	33.772	34.055	0					16	11	2	0	0	0	0.61938	1	11064	11064		45.952	5.1738	1	106250	+		33124	19605	23012	23088	33530	33530					0.07506106105654453
RLAAVAEL	8	Unmodified	_RLAAVAEL_					0	0	0			REV__ENST00000481869.1_1_1:934427-935027:-|nuORF	REV__ENST00000481869.1_1_1:934427-935027:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.75787353515625	2	421.758352	841.502152	0.85049	0.0003587	-2.9181	-0.0012307	-2.0676	-0.00087202	421.75707771746715	34.217	0.33224	34.217	34.134	34.466	0					16	8	2	0	0	0	0.54629	1	13180	13180		55.504	0.72789	1	710880	+		33125	19605	23012	23088	33531	33531					0.07506106105654453
RLADSLIGK	9	Unmodified	_RLADSLIGK_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7954406738281	2	486.795466	971.57638	0.3783	0.00018416	-1.1306	-0.00055035	-0.75226	-0.0003662	486.7949270909804	27.945	0.14866	27.945	27.845	27.993	0					9	3	3	0	0	0	0.082776	1	9812	9812		83.647	0	1	287020			33126	7158	23013	23089	33532	33532					0.08945449197187827
RLANDQSI	8	Unmodified	_RLANDQSI_					0	0	0			REV__ENSG00000142669|ENST00000270792|SH3BGRL3	REV__ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7477722167969	2	458.745973	915.477394	2.513	0.0011528	1.6488	0.0007564	4.1618	0.0019092	458.7468099583488	40.695	0.40615	40.695	40.566	40.972	0					18	7	4	0	0	0	0.52345	1	16165	16165		57.811	0	1	835620	+		33127	15157	23014	23090	33533	33533					0.016274262322895083
RLARSTGGP	9	Unmodified	_RLARSTGGP_					0	0	0			REV__ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	REV__ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7615966796875	2	457.761958	913.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.089	1	15.089	14.589	15.589	0								0	0	0	0.15451	1	3822	3822		58.782	2.0609	1		+		33128	12213	23015	23091	33534	33534					0.049148387060995447
RLASSVLR	8	Unmodified	_RLASSVLR_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF;chr17:39202445-39202994|380|13.56|0.73|4.21|+|ENST00000678012|RPL19,RPL19	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2823486328125	2	451.282526	900.550499	0.21714	9.799E-05	0.046961	2.1192E-05	0.2641	0.00011918	451.2823732099068	22.229	0.14994	22.229	22.132	22.282	0					5	3	2	0	0	0	0.57171	1	7201	7201		52.937	6.9847	1	42404			33129	2522	23016	23092	33535	33535					0.09624599745575324
RLCALRASKN	10	Unmodified	_RLCALRASKN_					0	0	0		DGKK|p.D376N|1|0.22|ENSG00000274588|chrX:50403550-50403550|C/T|missense_variant	DGKK|p.D376N|1|0.22|ENSG00000274588|chrX:50403550-50403550|C/T|missense_variant	DGKK|p.D376N|1|0.22|ENSG00000274588|chrX:50403550-50403550|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.3231201171875	2	566.324399	1130.63425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.831	1	18.831	18.331	19.331	0								0	0	0	0.362	1	4993	4993		36.447	0	1				33130	778	23017	23093	33536	33536					0.07415387850960542
RLCENIAGHLK	11	Carbamidomethyl (C)	_RLC(Carbamidomethyl (C))ENIAGHLK_	RLC(1)ENIAGHLK		RLC(76)ENIAGHLK		0	1	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.57135009765625	3	437.571439	1309.69249	-0.56557	-0.00024748	-0.0096446	-4.2202E-06	-0.57521	-0.0002517	437.571587378115	24.587	0.44954	24.587	24.48	24.929	0					22	9	4	0	0	0	0.18934	1	8509	8509		75.566	34.486	1	1011000			33131	3231	23018	23094	33537	33537	126				0.05003024705570169
RLCENIAGHLK	11	Carbamidomethyl (C)	_RLC(Carbamidomethyl (C))ENIAGHLK_	RLC(1)ENIAGHLK		RLC(100)ENIAGHLK		0	1	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.57122802734375	3	437.571439	1309.69249	0.70687	0.00030931	-1.5008	-0.0006567	-0.79391	-0.00034739	437.5708648919439	24.574	0.49945	24.574	24.463	24.963	0					22	10	4	0	0	0	0.058993	1	8501	8501		100.82	55.797	1	1834100			33132	3231	23018	23094	33538	33538	126				0.05003024705570169
RLCKALRNL	9	Unmodified	_RLCKALRNL_					0	0	0			REV__ENST00000426819.5_1_21:34911496-34915075:-|nuORF	REV__ENST00000426819.5_1_21:34911496-34915075:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.2266540527344	3	362.890332	1085.64917	1.1305	0.00041025	-0.73271	-0.00026589	0.39779	0.00014436	362.8898704604603	19.484	0.71652	19.484	19.378	20.094	0					36	14	3	0	0	0	0.53064	1	6114	6114		29.17	9.1396	1	7325800	+		33133	19120	23019	23095	33539	33539					0.10976879718964483
RLDDYNPINIG	11	Unmodified	_RLDDYNPINIG_					0	0	0			REV__nc|ENSG00000254986|Q9NY33-4|DPP3	REV__nc|ENSG00000254986|Q9NY33-4|DPP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	645.3271484375	2	645.327859	1288.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.368	1	40.368	39.868	40.868	0								0	0	0	0.45674	1	15905	15905		17.468	0	1		+		33134	17750	23020	23096	33540	33540					0.008389792125399254
RLDRRDEA	8	Unmodified	_RLDRRDEA_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.773681640625	2	515.773054	1029.53155	1.3112	0.00067627	-0.071571	-3.6914E-05	1.2396	0.00063936	515.7729527394913	15.245	0.11119	15.245	15.204	15.316	0					5	3	2	0	0	0	0.66372	1	3290	3290		38.806	4.6336	1	179840			33135	7845	23021	23097	33541	33541					0.017970183838542653
RLDSLRNS	8	Unmodified	_RLDSLRNS_					0	0	0			REV__ENST00000376874.8_1_12:123956868-123957054:-|nuORF	REV__ENST00000376874.8_1_12:123956868-123957054:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.76519775390625	2	480.764697	959.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.753	1	15.753	15.253	16.253	0								0	0	0	1.7419	1	3651	3651		21.96	1.013	1		+		33136	18725	23022	23098	33542	33542					0.03346517497914192
RLEADANQVL	10	Unmodified	_RLEADANQVL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.8045654296875	2	564.80402	1127.59349	1.2264	0.00069266	-0.47256	-0.0002669	0.75381	0.00042575	564.8035677740748	31.455	0.16705	31.455	31.369	31.536	0					14	7	3	0	0	0	0.68774	1	10104	10104		23.523	0.94304	1	73749			33137	6148	23023	23099	33543	33543					0.03479325012312984
RLEELARG	8	Unmodified	_RLEELARG_					0	0	0			REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2693786621094	2	472.269616	942.524678	0.61754	0.00029164	-1.1098	-0.00052414	-0.49229	-0.00023249	472.26909737555155	21.801	0.18781	21.801	21.71	21.898	0					9	4	3	0	0	0	0.41701	1	6975	6975		68.787	2.3575	1	1665100	+		33138	19739	23024	23100	33544	33544					0.05111705503293251
RLEGAPGAR	9	Unmodified	_RLEGAPGAR_					0	0	0			REV__nc|ENSG00000215906|A8MY62|LACTBL1	REV__nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7618713378906	2	463.761958	925.509363	-0.15084	-6.9956E-05	0.50536	0.00023437	0.35452	0.00016441	463.7622962158661	13.865	0.26634	13.865	13.712	13.978	0					31	13	3	0	0	0	0.22377	1	2812	2812		58.782	2.0609	1	350230	+		33139	17602	23025	23101	33545	33545					0.04362838706083494
RLEGMLGPA	9	Unmodified	_RLEGMLGPA_					0	0	0		PERM1|p.V673M|1|0.21|ENSG00000187642|chr1:979013-979013|C/T|missense_variant	PERM1|p.V673M|1|0.21|ENSG00000187642|chr1:979013-979013|C/T|missense_variant	PERM1|p.V673M|1|0.21|ENSG00000187642|chr1:979013-979013|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2550964355469	2	472.25512	942.495686	-0.54633	-0.00025801	0.68327	0.00032268	0.13694	6.467E-05	472.2556389911302	29.593	0.32378	29.593	29.415	29.739	0					9	8	2	0	0	0	0.43426	1	9983	9983		38.806	3.1879	1	48124			33140	11922	23026	23102	33546	33546					0.02213844882646754
RLEIPYGECA	10	Unmodified	_RLEIPYGECA_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.19158935546875	3	384.190225	1149.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.384	1	12.384	11.884	12.884	0								0	0	0	0.4201	1	2772	2772		15.333	0	1		+		33141	13190	23027	23103	33547	33547					-0.01994822125357132
RLELPGPGK	9	Unmodified	_RLELPGPGK_					0	0	0		ENST00000422364.2_1_11:63993766-63994078:+|nuORF	ENST00000422364.2_1_11:63993766-63994078:+|nuORF	ENST00000422364.2_1_11:63993766-63994078:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7898864746094	2	483.790184	965.565815	-0.6087	-0.00029448	0.38767	0.00018755	-0.22103	-0.00010693	483.7901812428554	25.578	0.1602	25.578	25.476	25.636	0					6	3	2	0	0	0	0.28504	1	9106	9106		44.377	4.319	1	271900			33142	9407	23028	23104	33548	33548					0.08165466542766353
RLEVGGRSTA	10	Unmodified	_RLEVGGRSTA_					0	0	0			REV__ENST00000393158.6_1_11:103780486-103797644:-|nuORF	REV__ENST00000393158.6_1_11:103780486-103797644:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2913818359375	2	523.291079	1044.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.644	1	17.644	17.144	18.144	0								0	0	0	0.37602	1	5277	5277		37.812	0.65241	1		+		33143	18845	23029	23105	33549	33549					0.047104755607279
RLFASVDAK	9	Unmodified	_RLFASVDAK_					0	0	0			REV__nc|ENSG00000162711|Q96P20-2|NLRP3	REV__nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7903747558594	2	503.787641	1005.56073	2.9304	0.0014763	3.5914	0.0018093	6.5218	0.0032856	503.78854686845847	48.643	0.16568	48.643	48.548	48.713	0					16	8	3	0	0	0	0.3269	1	19305	19305		47.96	3.4285	1	147000	+		33144	15833	23030	23106	33550	33550					0.058171626801254206
RLFEGIIKGK	10	Unmodified	_RLFEGIIKGK_					0	0	0		ENST00000486402.1_1_X:41519640-41524682:-|nuORF;CASK|p.N757Tfs*40|1|0.18|ENSG00000147044|chrX:41534753-41534753|T/-|frameshift_variant;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK	ENST00000486402.1_1_X:41519640-41524682:-|nuORF	ENST00000486402.1_1_X:41519640-41524682:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.5759582519531	3	387.576519	1159.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.048	1	30.048	29.548	30.548	0								0	0	0	0.40634	1	11192	11192		28.577	2.5133	1				33145	376	23031	23107	33551	33551					0.13426259565085275
RLFEGIIKGK	10	Unmodified	_RLFEGIIKGK_					0	0	0		ENST00000486402.1_1_X:41519640-41524682:-|nuORF;CASK|p.N757Tfs*40|1|0.18|ENSG00000147044|chrX:41534753-41534753|T/-|frameshift_variant;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK	ENST00000486402.1_1_X:41519640-41524682:-|nuORF	ENST00000486402.1_1_X:41519640-41524682:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.57647705078125	3	387.576519	1159.70773	-0.66144	-0.00025636	0.069769	2.7041E-05	-0.59167	-0.00022932	387.5767404068462	30.015	0.31765	30.015	29.896	30.214	0					11	6	2	0	0	0	0.48255	1	11097	11097		47.228	10.781	1	104010			33146	376	23031	23107	33552	33552					0.13426259565085275
RLFGKKQM	8	Unmodified	_RLFGKKQM_					0	0	0		ENSG00000168374|ENST00000303436|ARF4;ENST00000489843.1_1_3:57563094-57582900:-|nuORF;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF	ENSG00000168374|ENST00000303436|ARF4	ENSG00000168374|ENST00000303436|ARF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.338	1	23.338	22.838	23.838	0								0	0	0	1.7419	1	7899	7899		37.159	0	1				33147	6084	23032	23108	33553	33553					0.0715811690757846
RLFGRGLSW	9	Unmodified	_RLFGRGLSW_					0	0	0			REV__ENSG00000011295|ENST00000261647|TTC19	REV__ENSG00000011295|ENST00000261647|TTC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3085327148438	2	546.309075	1090.6036	-0.24798	-0.00013548	-1.0599	-0.00057904	-1.3079	-0.00071451	546.3086379047265	24.178	0.13543	24.178	24.077	24.213	0					7	4	2	0	0	0	0.41354	1	7341	7341		40.573	2.7611	1	173690	+		33148	12904	23033	23109	33554	33554					0.0619197752821492
RLFIAELQ	8	Unmodified	_RLFIAELQ_					0	0	0			REV__ENSG00000105223|ENST00000409735|PLD3	REV__ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.53070068359375	3	330.530798	988.570566	0.27594	9.1206E-05	-0.44356	-0.00014661	-0.16762	-5.5405E-05	330.53060104946456	20.632	0.22175	20.632	20.547	20.769	0					15	6	3	0	0	0	0.63077	1	5561	5561		37.812	0	1	721350	+		33149	13761	23034	23110	33555	33555					0.07582350685515848
RLFRSSIG	8	Unmodified	_RLFRSSIG_					0	0	0			REV__ENST00000467838.2_1_9:139335515-139335683:-|nuORF	REV__ENST00000467838.2_1_9:139335515-139335683:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2747802734375	2	468.274701	934.534849	-0.51336	-0.00024039	-0.15904	-7.4477E-05	-0.67241	-0.00031487	468.27469985488085	30.4	0.11536	30.4	30.342	30.458	0					4	2	2	0	0	0	0.7126	1	11263	11263		31.955	0	1	86545	+		33150	19433	23035	23111	33556	33556					0.06496313228512918
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.81622314453125	2	508.816202	1015.61785	-0.021175	-1.0774E-05	-0.097542	-4.9631E-05	-0.11872	-6.0405E-05	508.8161936961704	31.183	0.63039	31.183	30.982	31.613	0					42	15	4	0	0	0	0.10506	1	11322	11322		78.264	4.0087	1	1418700			33151	3449	23036	23112	33557	33557					0.11066629956519591
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.8160095214844	2	508.816202	1015.61785	0.15744	8.0106E-05	-0.16469	-8.3796E-05	-0.0072513	-3.6896E-06	508.81607564479634	30.907	0.84114	30.907	30.724	31.566	0					51	22	3	0	0	0	0.24095	1	10709	10709		56.721	1.2168	1	2142600			33152	3449	23036	23112	33558	33558					0.11066629956519591
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;nc|ENSG00000125944|O43390-4|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.816162109375	2	508.816202	1015.61785	-0.067783	-3.4489E-05	0.17003	8.6513E-05	0.10225	5.2024E-05	508.81637925887196	31.057	0.16382	31.057	30.929	31.093	0					8	3	3	0	0	0	0.42902	1	11572	11572		39.253	3.6345	1	285040			33153	3449	23036	23112	33559	33559					0.11066629956519591
RLFYSMLTY	9	Unmodified	_RLFYSMLTY_					0	0	0			REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.30615234375	2	597.30481	1192.59507	1.8492	0.0011045	0.40694	0.00024306	2.2561	0.0013476	597.3050201768605	34.929	0.86972	34.929	34.767	35.637	0					51	17	4	0	0	0	0.43426	1	13422	13422		38.806	38.806	1	863570	+		33154	18984	23037	23113	33560	33560					0.0064724277674486075
RLGCRRLR	8	Unmodified	_RLGCRRLR_					0	0	0			REV__ENST00000449739.6_1_4:73923833-73935428:-|nuORF	REV__ENST00000449739.6_1_4:73923833-73935428:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3154296875	2	515.314169	1028.61378	3.2466	0.001673	-0.939	-0.00048388	2.3076	0.0011891	515.3138926687379	27.534	0.56882	27.534	27.424	27.993	0					28	11	5	0	0	0	0.32597	1	9853	9853		68.787	0.30212	1	6817400	+		33155	19303	23038	23114	33561	33561					0.10062261981784104
RLGDSSGPAL	10	Unmodified	_RLGDSSGPAL_					0	0	0		ENSG00000184640|ENST00000427177|SEPTIN9	ENSG00000184640|ENST00000427177|SEPTIN9	ENSG00000184640|ENST00000427177|SEPTIN9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7589416503906	2	486.759081	971.503609	-2.9123	-0.0014176	2.2993	0.0011192	-0.61299	-0.00029838	486.76004053461355	29.498	0.2106	29.498	29.405	29.616	0					9	5	2	0	0	0	0.50881	1	9921	9921		44.377	1.981	1	170030			33156	7028	23039	23115	33562	33562					0.016716954037633514
RLGEALVKL	9	Unmodified	_RLGEALVKL_					0	0	0			REV__ENST00000291906.4_1_9:131465114-131467624:+|nuORF	REV__ENST00000291906.4_1_9:131465114-131467624:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.8208312988281	2	499.821484	997.628415	-0.049825	-2.4903E-05	-1.3196	-0.00065957	-1.3694	-0.00068447	499.82073830532784	31.989	0.1067	31.989	31.914	32.021	0					6	4	2	0	0	0	0.4966	1	10317	10317		32.812	1.2826	1	43032	+		33157	18163	23040	23116	33563	33563					0.1295061261095043
RLGEPPAPG	9	Unmodified	_RLGEPPAPG_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2450256347656	2	447.245609	892.476666	-0.39364	-0.00017605	-0.11995	-5.3647E-05	-0.51359	-0.0002297	447.24551373156527	23.364	0.14875	23.364	23.297	23.446	0					5	3	2	0	0	0	0.41354	1	7147	7147		40.573	8.6178	1	64363	+		33158	13001	23041	23117	33564	33564					0.02612631583235725
RLGERQIPAG	10	Unmodified	_RLGERQIPAG_					0	0	0		ENSG00000015532|ENST00000017003|XYLT2;XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant;nc|ENSG00000015532|Q9H1B5-2|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.81591796875	2	548.814722	1095.61489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.567	1	11.567	11.067	12.067	0								0	0	0	0.4162	1	2400	2400		25.574	0	1				33159	1082	23042	23118	33565	33565					0.0709075483171091
RLGLGALK	8	Unmodified	_RLGLGALK_					0	0	0			REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2765808105469	2	414.276712	826.538872	0.39322	0.0001629	-0.8509	-0.00035251	-0.45768	-0.00018961	414.2762563129633	19.106	0.26365	19.106	18.9	19.164	0					8	5	2	0	0	0	0.65276	1	5997	5997		40.573	0	1	173710	+		33160	21602	23043	23119	33566	33566					0.11866402722216662
RLGSVEAPK	9	Unmodified	_RLGSVEAPK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7801818847656	2	478.779816	955.545079	1.0263	0.00049138	-0.53817	-0.00025766	0.48814	0.00023371	478.7794767948938	16.502	0.32711	16.502	16.3	16.627	0					14	11	2	0	0	0	0.098791	1	3767	3767		79.713	0.26157	1	54146			33161	2679	23044	23120	33567	33567					0.0655287616308442
RLGSVEAPK	9	Unmodified	_RLGSVEAPK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7793884277344	2	478.779816	955.545079	-0.66016	-0.00031607	-1.1361	-0.00054396	-1.7963	-0.00086003	478.7798978113144	16.755	0.65946	16.755	16.2	16.859	0					23	13	2	0	0	0	0.078509	1	4718	4718		85.161	4.7062	1	254630			33162	2679	23044	23120	33568	33568					0.0655287616308442
RLHIAIDGLL	10	Unmodified	_RLHIAIDGLL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8463134765625	2	560.84549	1119.67643	-0.032396	-1.8169E-05	0.81716	0.0004583	0.78476	0.00044013	560.8459872443599	32.117	0.20959	32.117	32.015	32.225	0					7	4	2	0	0	0	0.65051	1	12215	12215		10.866	0.6003	1	135630	+		33163	15973	23045	23121	33569	33569					0.12137686530991232
RLHRRGTN	8	Unmodified	_RLHRRGTN_					0	0	0			REV__ENST00000434837.7_1_6:37664674-37664983:-|nuORF	REV__ENST00000434837.7_1_6:37664674-37664983:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2930908203125	2	505.291748	1008.56894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.705	1	23.705	23.205	24.205	0								0	0	0	1.7419	1	8204	8204		45.952	1.8352	1		+		33164	19199	23046	23122	33570	33570					0.06500154440118422
RLHRRGTN	8	Unmodified	_RLHRRGTN_					0	0	0			REV__ENST00000434837.7_1_6:37664674-37664983:-|nuORF	REV__ENST00000434837.7_1_6:37664674-37664983:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.29315185546875	2	505.291748	1008.56894	2.9343	0.0014827	-0.30558	-0.00015441	2.6287	0.0013283	505.29176715068303	23.708	0.66093	23.708	23.552	24.213	0					34	13	4	0	0	0	0.64144	1	8085	8085		42.396	42.396	1	9450400	+		33165	19199	23046	23122	33571	33571					0.06500154440118422
RLILEQHRSTL	11	Unmodified	_RLILEQHRSTL_					0	0	0		sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1;sp|P16784|ITP_HCMVAInnertegumentproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL47PE=1SV=2	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	683.399169921875	2	683.401692	1364.78883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.489	1	40.489	39.989	40.989	0								0	0	0	0.44926	1	15434	15434		26.063	4.1035	1				33166	22472	23047	23123	33572	33572					0.12102915537161607
RLIPNPTHG	9	Unmodified	_RLIPNPTHG_					0	0	0		ENST00000544944.6_1_19:45542792-45543053:+|nuORF	ENST00000544944.6_1_19:45542792-45543053:+|nuORF	ENST00000544944.6_1_19:45542792-45543053:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.78546142578125	2	502.785433	1003.55631	0.61708	0.00031026	-1.1587	-0.00058259	-0.54165	-0.00027233	502.7851138495734	30.107	0.17285	30.107	30.022	30.195	0					6	4	2	0	0	0	0.53083	1	10831	10831		29.15	5.6269	1	49331			33167	10570	23048	23124	33573	33573					0.05467698257223219
RLKKGCPAY	9	Unmodified	_RLKKGCPAY_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.292236328125	2	518.292037	1034.56952	1.5754	0.00081652	0.78289	0.00040576	2.3583	0.0012223	518.2921411517709	43.554	0.30303	43.554	43.443	43.746	0					12	9	2	0	0	0	0.49003	1	17425	17425		33.516	5.6333	1	148840	+		33168	14367	23049	23125	33574	33574					0.05361813044964947
RLKLLAHLSP	10	Unmodified	_RLKLLAHLSP_					0	0	0		ENST00000458578.6_1_22:21976769-21977039:+|nuORF	ENST00000458578.6_1_22:21976769-21977039:+|nuORF	ENST00000458578.6_1_22:21976769-21977039:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.9129638671875	3	383.248514	1146.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.706	1	23.706	23.206	24.206	0								0	0	0	0.40797	1	7279	7279		28.081	3.5623	1				33169	9712	23050	23126	33575	33575					0.15621965801983606
RLKLVNASV	9	Unmodified	_RLKLVNASV_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;ENST00000393501.5_1_3:124103736-124207203:+|nuORF;nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN	nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000160145|O60229-2|KALRN	nc|ENSG00000038382|O75962-2|TRIO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.317626953125	2	500.319109	998.623664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.469	1	43.469	42.969	43.969	0								0	0	0	0.23445	1	16998	16998		45.972	6.7194	1				33170	1182;5341	23051	23127	33576	33576					0.12429728468180201
RLKSESPKNQ	10	Unmodified	_RLKSESPKNQ_					0	0	0		GTPBP8|p.F131Hfs*20|1|0.49|ENSG00000163607|chr3:112993080-112993083|TTTT/-|frameshift_variant	GTPBP8|p.F131Hfs*20|1|0.49|ENSG00000163607|chr3:112993080-112993083|TTTT/-|frameshift_variant	GTPBP8|p.F131Hfs*20|1|0.49|ENSG00000163607|chr3:112993080-112993083|TTTT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	593.8303833007812	2	593.830569	1185.64658	-0.54526	-0.00032379	0.86813	0.00051552	0.32287	0.00019173	593.8312828687118	26.907	0.12878	26.907	26.839	26.968	0					9	4	3	0	0	0	0.536	1	8520	8520		41.427	3.9184	1	105000			33171	11175	23052	23128	33577	33577					0.061187027950154516
RLKSLELK	8	Unmodified	_RLKSLELK_					0	0	0			REV__nc|ENSG00000151575|Q8N6V9-2|TEX9	REV__nc|ENSG00000151575|Q8N6V9-2|TEX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.821044921875	2	493.821484	985.628415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.14	1	16.14	15.64	16.64	0								0	0	0	1.7419	1	3626	3626		16.473	0	1		+		33172	15482	23053	23129	33578	33578					0.13502612610932374
RLLALLCW	8	Unmodified	_RLLALLCW_					0	0	0			REV__ENST00000431422.1_1_6:134758921-134824003:+|nuORF	REV__ENST00000431422.1_1_6:134758921-134824003:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.8659973144531	3	329.865124	986.573543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.362	1	26.362	25.862	26.862	0								0	0	0	1.7419	1	8002	8002		7.6903	0	1		+		33173	19166	23054	23130	33579	33579					0.07971902538679387
RLLEPSDMH	9	Unmodified	_RLLEPSDMH_					0	0	0		ENST00000469591.1_1_2:63169876-63182810:+|nuORF	ENST00000469591.1_1_2:63169876-63182810:+|nuORF	ENST00000469591.1_1_2:63169876-63182810:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2732543945312	2	549.274041	1096.53353	-1.4908	-0.00081888	-0.82922	-0.00045547	-2.3201	-0.0012743	549.2735065478566	36.211	0.37742	36.211	36.06	36.437	0					34	14	3	0	0	0	0.099922	1	12932	12932		79.451	9.8234	1	649940			33174	9829	23055	23131	33580	33580					-0.01087688922552843
RLLGLAGLAGG	11	Unmodified	_RLLGLAGLAGG_					0	0	0			REV__ENSG00000203772|ENST00000685335|SPRN	REV__ENSG00000203772|ENST00000685335|SPRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.3114318847656	2	499.311284	996.608014	0.29138	0.00014549	0.38338	0.00019143	0.67477	0.00033692	499.3112715571462	23.738	0.26223	23.738	23.595	23.857	0					13	9	2	0	0	0	0.60833	1	6928	6928		26.693	0	1	62445	+		33175	17459	23056	23132	33581	33581					0.10957441951131841
RLLGWIHA	8	Unmodified	_RLLGWIHA_					0	0	0			REV__ENST00000527065.1_1_11:104915521-104915599:-|nuORF	REV__ENST00000527065.1_1_11:104915521-104915599:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2879333496094	2	483.287611	964.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.658	1	16.658	16.158	17.158	0								0	0	0	1.7419	1	3998	3998		29.842	1.5873	1		+		33176	20006	23057	23133	33582	33582					0.07697207470801004
RLLLAAKPVL	10	Unmodified	_RLLLAAKPVL_					0	0	0			REV__nc|ENSG00000158062|Q5T124-3|UBXN11	REV__nc|ENSG00000158062|Q5T124-3|UBXN11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.2531433105469	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.581	1	49.581	49.081	50.081	0								0	0	0	0.4201	1	19605	19605		12.812	2.5465	1		+		33177	15675	23058	23134	33583	33583					0.19564037950112834
RLLLRSVAVR	10	Unmodified	_RLLLRSVAVR_					0	0	0		ENST00000564322.1_1_9:841703-894198:+|nuORF	ENST00000564322.1_1_9:841703-894198:+|nuORF	ENST00000564322.1_1_9:841703-894198:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.9309387207031	3	394.931296	1181.77206	0.70041	0.00027661	-1.1787	-0.0004655	-0.47827	-0.00018888	394.9309007118744	19.946	0.26042	19.946	19.835	20.095	0					9	5	3	0	0	0	0.71467	1	6098	6098		20.03	1.7684	1	227890			33178	10741	23059	23135	33584	33584					0.18844459441879735
RLLPGNATISK	11	Unmodified	_RLLPGNATISK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.3543090820312	2	585.35368	1168.69281	0.11219	6.5671E-05	0.3645	0.00021336	0.47669	0.00027903	585.3540733112243	26.562	0.16814	26.562	26.451	26.62	0					5	3	2	0	0	0	0.17294	1	9412	9412		77.533	17.603	1	125080			33179	6411	23060	23136	33585	33585					0.11520767697084011
RLLPGYQQK	9	Unmodified	_RLLPGYQQK_					0	0	0			REV__nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	REV__nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.8214721679688	2	551.822015	1101.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.335	1	13.335	12.835	13.835	0								0	0	0	0.39802	1	3014	3014		11.511	1.2458	1		+		33180	21054	23061	23137	33586	33586					0.08272826979850834
RLLPRGSHA	9	Unmodified	_RLLPRGSHA_					0	0	0			REV__ENST00000520820.1_1_8:103251674-103256308:+|nuORF	REV__ENST00000520820.1_1_8:103251674-103256308:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2972717285156	2	503.798875	1005.5832	1.0169	0.00051231	-0.80921	-0.00040768	0.20769	0.00010463	503.80003373027387	41.552	0.70013	41.552	41.128	41.828	0					39	29	2	0	0	0	0.60749	1	16210	16210		20.947	0	1	143940	+		33181	19951	23062	23138	33587	33587					0.08062806868417738
RLLWSVQEERP	11	Unmodified	_RLLWSVQEERP_					0	0	0			REV__ENST00000464192.1_1_3:107047282-107047681:-|nuORF	REV__ENST00000464192.1_1_3:107047282-107047681:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	706.888916015625	2	706.885875	1411.7572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.596	1	34.596	34.096	35.096	0								0	0	0	0.44926	1	11318	11318		26.063	4.3776	1		+		33182	19400	23063	23139	33588	33588					0.06778922783223607
RLMEIYQEK	9	Unmodified	_RLMEIYQEK_					0	0	0		ENSG00000089154|ENST00000300648|GCN1;ENST00000548132.1_1_12:120592933-120593466:-|nuORF	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.3184814453125	2	605.318448	1208.62234	0.72257	0.00043738	0.14518	8.7879E-05	0.86775	0.00052526	605.3184017192485	28.573	0.31279	28.573	28.465	28.778	0					13	6	3	0	0	0	0.12278	1	10499	10499		74.165	12.474	1	485340			33183	1802	23064	23140	33589	33589					0.026377263170843435
RLMSLPIAKK	10	Unmodified	_RLMSLPIAKK_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.24530029296875	3	386.246005	1155.71618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.617	1	26.617	26.117	27.117	0								0	0	0	0.27346	1	8113	8113		55.084	24.515	1				33184	7583	23065	23141	33590	33590					0.14455490210048083
RLMSLPIAKK	10	Unmodified	_RLMSLPIAKK_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.2462158203125	3	386.246005	1155.71618	0.85381	0.00032978	-1.0641	-0.00041102	-0.21033	-8.1241E-05	386.24572302193604	26.849	0.5084	26.849	26.671	27.18	0					32	12	5	0	0	0	0.56099	1	9343	9343		38.714	12.651	1	721770			33185	7583	23065	23141	33591	33591					0.14455490210048083
RLMSLPIAKK	10	Unmodified	_RLMSLPIAKK_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.245849609375	3	386.246005	1155.71618	-1.1824	-0.0004567	0.35498	0.00013711	-0.82744	-0.0003196	386.2462059206846	26.623	0.22466	26.623	26.519	26.743	0					12	8	3	0	0	0	0.56099	1	8395	8395		38.714	13.588	1	49242			33186	7583	23065	23141	33592	33592					0.14455490210048083
RLMSLPIAKK	10	Unmodified	_RLMSLPIAKK_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.2458801269531	3	386.246005	1155.71618	0.13915	5.3746E-05	-0.54682	-0.00021121	-0.40767	-0.00015746	386.24585960511297	26.846	0.45783	26.846	26.661	27.118	0					24	9	4	0	0	0	0.4737	1	9660	9660		48.188	22.125	1	791870			33187	7583	23065	23141	33593	33593					0.14455490210048083
RLNLFDCH	8	Unmodified	_RLNLFDCH_					0	0	0			REV__ENSG00000180096|ENST00000321367|SEPTIN1	REV__ENSG00000180096|ENST00000321367|SEPTIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.25048828125	2	509.250369	1016.48618	1.3435	0.00068418	-1.2559	-0.00063958	0.087569	4.4595E-05	509.2498096169435	24.422	0.75018	24.422	24.164	24.914	0					35	15	5	0	0	0	0.63077	1	8409	8409		44.117	0	1	1284400	+		33188	16797	23066	23142	33594	33594					-0.021399234028990577
RLNVEGSI	8	Unmodified	_RLNVEGSI_					0	0	0			REV__ENSG00000120327|ENST00000239449|PCDHB14	REV__ENSG00000120327|ENST00000239449|PCDHB14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2506408691406	2	444.250892	886.48723	0.21911	9.7342E-05	-1.228	-0.00054554	-1.0089	-0.00044819	444.2505235420453	31.82	0.14635	31.82	31.757	31.903	0					10	6	2	0	0	0	0.53424	1	10251	10251		56.721	1.9447	1	92204	+		33189	14278	23067	23143	33595	33595					0.03944614237661881
RLPAPPGAL	9	Unmodified	_RLPAPPGAL_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2D|p.G5182Afs*61|1|0.57|ENSG00000167548|chr12:49026421-49026421|C/-|frameshift_variant;KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant;KMT2D|p.T4629Pfs*11|1|0.27|ENSG00000167548|chr12:49030395-49030395|G/-|frameshift_variant;KMT2D|p.S4327Afs*57|1|0.44|ENSG00000167548|chr12:49031727-49031727|G/-|frameshift_variant	nc|ENSG00000167548|O14686-3|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2742004394531	2	446.27417	890.533787	-0.40843	-0.00018227	1.1486	0.00051259	0.74018	0.00033032	446.2746473881261	33.078	0.40652	33.078	32.893	33.3	0					20	11	3	0	0	0	0.55282	1	12209	12209		26.796	0	1	329290			33190	6000	23068	23144	33596	33596					0.08414098859600472
RLPCADEKGVL	11	Unmodified	_RLPCADEKGVL_					0	0	0			REV__ENST00000428206.5_1_7:72717270-72717387:-|nuORF	REV__ENST00000428206.5_1_7:72717270-72717387:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.8265991210938	2	600.823898	1199.63324	2.1373	0.0012841	1.9193	0.0011531	4.0566	0.0024373	600.8251503268879	14.549	0.16861	14.549	14.44	14.609	0					7	3	3	0	0	0	0.60656	1	3656	3656		36.447	3.6343	1	446720	+		33191	19130	23069	23145	33597	33597					0.04141128691412632
RLPDERGPL	9	Unmodified	_RLPDERGPL_					0	0	0		ENST00000490362.1_1_2:217526523-217526805:+|nuORF;ENST00000436812.1_3_2:217526523-217528824:+|nuORF;ENSG00000115457|ENST00000233809|IGFBP2;IGFBP2|p.E251K|1|0.3|ENSG00000115457|chr2:216661936-216661936|G/A|missense_variant	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7965087890625	2	526.795998	1051.57744	2.0448	0.0010772	-1.361	-0.00071697	0.68377	0.00036021	526.795392416217	27.132	0.38025	27.132	26.969	27.349	0					23	9	3	0	0	0	0.27249	1	9434	9434		52.937	18.764	1	299160			33192	2909	23070	23146	33598	33598					0.05371663566097595
RLPDERGPL	9	Unmodified	_RLPDERGPL_					0	0	0		ENST00000490362.1_1_2:217526523-217526805:+|nuORF;ENST00000436812.1_3_2:217526523-217528824:+|nuORF;ENSG00000115457|ENST00000233809|IGFBP2;IGFBP2|p.E251K|1|0.3|ENSG00000115457|chr2:216661936-216661936|G/A|missense_variant	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7965087890625	2	526.795998	1051.57744	0.63558	0.00033482	-0.74102	-0.00039037	-0.10544	-5.5544E-05	526.7955377181637	27.069	0.42135	27.069	26.952	27.373	0					20	8	4	0	0	0	0.27249	1	9631	9631		52.937	12.159	1	268710			33193	2909	23070	23146	33599	33599					0.05371663566097595
RLPGAHLQ	8	Unmodified	_RLPGAHLQ_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.2607116699219	2	446.261594	890.508634	-2.7179	-0.0012129	0.83928	0.00037454	-1.8786	-0.00083835	446.26170609187034	31.067	0.19026	31.067	30.974	31.164	0					6	5	2	0	0	0	0.66372	1	10658	10658		38.806	1.647	1	86967			33194	4883	23071	23147	33600	33600					0.05900044057023024
RLPHSTAAL	9	Unmodified	_RLPHSTAAL_					0	0	0		nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.27960205078125	2	483.279983	964.545414	-0.59814	-0.00028907	-0.62325	-0.00030121	-1.2214	-0.00059028	483.27964724650747	23.059	0.21153	23.059	22.889	23.1	0					9	4	3	0	0	0	0.14578	1	7766	7766		52.937	21.407	1	280010			33195	5179	23072	23148	33601	33601					0.06172295882936396
RLPLLPASR	9	Unmodified	_RLPLLPASR_					0	0	0		ENST00000566264.1_1_16:1583702-1584173:+|nuORF	ENST00000566264.1_1_16:1583702-1584173:+|nuORF	ENST00000566264.1_1_16:1583702-1584173:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.5530090332031	3	341.553826	1021.63965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.696	1	19.696	19.196	20.196	0								0	0	0	0.37786	1	5399	5399		17.468	0	1				33196	10760	23073	23149	33602	33602					0.12969434705075855
RLPPPTPE	8	Unmodified	_RLPPPTPE_					0	0	0		ENST00000425825.6_1_11:66105015-66105123:-|nuORF	ENST00000425825.6_1_11:66105015-66105123:-|nuORF	ENST00000425825.6_1_11:66105015-66105123:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.75384521484375	2	453.75581	905.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.544	1	13.544	13.044	14.044	0								0	0	0	1.7419	1	3321	3321		25.45	2.4077	1				33197	9439	23074	23150	33603	33603					0.040538022430382625
RLQEIFTEK	9	Unmodified	_RLQEIFTEK_					0	0	0		ENSG00000168818|ENST00000306200|STX18;ENST00000503692.5_1_4:4422578-4426973:-|nuORF	ENSG00000168818|ENST00000306200|STX18	ENSG00000168818|ENST00000306200|STX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.3246459960938	2	582.324588	1162.63462	1.6611	0.00096733	-1.0709	-0.00062361	0.59025	0.00034372	582.3238618256923	29.745	0.31431	29.745	29.633	29.947	0					14	6	4	0	0	0	0.090954	1	10945	10945		81.525	21.407	1	525270			33198	6127	23075	23151	33604	33604					0.059810860518155096
RLQLANTLLAP	11	Unmodified	_RLQLANTLLAP_					0	0	0			REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF	REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.3681640625	2	605.36933	1208.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.412	1	37.412	36.912	37.912	0								0	0	0	0.45674	1	12254	12254		17.468	0	1		+		33199	20356	23076	23152	33605	33605					0.12809340731178054
RLQSGTRR	8	Unmodified	_RLQSGTRR_					0	0	0			REV__ENST00000394236.7_1_3:93692655-93692814:-|nuORF	REV__ENST00000394236.7_1_3:93692655-93692814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.28753662109375	2	487.286131	972.55771	3.5024	0.0017067	-0.40697	-0.00019831	3.0954	0.0015083	487.2858561257025	20.591	0.080736	20.591	20.531	20.612	0					4	2	2	0	0	0	0.69548	1	5774	5774		34.173	34.173	1	55160	+		33200	18859	23077	23153	33606	33606					0.0703333234598631
RLRAHNQL	8	Unmodified	_RLRAHNQL_					0	0	0			REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53436279296875	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.164	1	28.164	27.664	28.664	0								0	0	0	1.7419	1	8766	8766		21.96	0	1		+		33201	15408	23078	23154	33607	33607					0.0754192272564751
RLRKIYHS	8	Unmodified	_RLRKIYHS_					0	0	0		nc|ENSG00000185739|Q86TD4-1|SRL;ENSG00000185739|ENST00000399609|SRL;nc|ENSG00000185739|Q86TD4-3|SRL	nc|ENSG00000185739|Q86TD4-1|SRL	nc|ENSG00000185739|Q86TD4-1|SRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8229370117188	2	536.82235	1071.63015	0.20463	0.00010985	0.86363	0.00046361	1.0683	0.00057346	536.8228433323801	41.491	0.1796	41.491	41.46	41.64	0					18	8	3	0	0	0	0.65276	1	15769	15769		40.573	0	1	237820			33202	7102	23079	23155	33608	33608					0.09719666419528039
RLRKRFPG	8	Unmodified	_RLRKRFPG_					0	0	0			REV__ENSG00000111181|ENST00000684302|SLC6A12	REV__ENSG00000111181|ENST00000684302|SLC6A12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.8853759765625	3	343.885799	1028.63557	-0.70279	-0.00024168	-0.4443	-0.00015279	-1.1471	-0.00039447	343.88561322912744	21.384	0.081436	21.384	21.337	21.418	0					6	2	3	0	0	0	0.79176	1	6134	6134		17.365	0	1	280990	+		33203	13955	23080	23156	33609	33609					0.12239390002036998
RLRPGSELHL	10	Unmodified	_RLRPGSELHL_					0	0	0		ENST00000587262.1_1_18:43435450-43438580:-|nuORF;ENSG00000152223|ENST00000282041|EPG5	ENST00000587262.1_1_18:43435450-43438580:-|nuORF	ENST00000587262.1_1_18:43435450-43438580:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.3432006835938	2	589.343646	1176.67274	0.14207	8.3728E-05	-0.92806	-0.00054695	-0.78599	-0.00046322	589.3429118604408	53.053	0.84975	53.053	52.742	53.591	0					92	53	3	0	0	0	0.71938	1	18676	18676		19.104	0.84144	1	128280			33204	5003	23081	23157	33610	33610					0.09147016757151505
RLRPPTACAP	10	Unmodified	_RLRPPTACAP_					0	0	0		MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant	MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant	MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.298095703125	2	541.300393	1080.58623	-1.483	-0.00080277	-2.1798	-0.00118	-3.6629	-0.0019827	541.2992287590674	21.224	0.158	21.224	21.136	21.294	0					5	3	2	0	0	0	0.66699	1	6130	6130		14.865	0	1	150620			33205	11371	23082	23158	33611	33611					0.04916313930903016
RLRPWPGQ	8	Unmodified	_RLRPWPGQ_					0	0	0			REV__ENST00000245222.8_1_19:49133008-49133209:+|nuORF	REV__ENST00000245222.8_1_19:49133008-49133209:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2876281738281	2	505.288143	1008.56173	-1.9831	-0.001002	1.1226	0.00056725	-0.8605	-0.0004348	505.2887334198483	14.336	0.62805	14.336	14.249	14.877	0					57	25	5	0	0	0	0.59411	1	3138	3138		50.025	11.218	1	13226000	+		33206	17939	23083	23159	33612	33612					0.05779421839702081
RLRREEMK	8	Unmodified	_RLRREEMK_					0	0	0			REV__VPS9D1|p.D265Gfs*127|1|0.45|ENSG00000075399|chr16:89711366-89711367|-/C|frameshift_variant	REV__VPS9D1|p.D265Gfs*127|1|0.45|ENSG00000075399|chr16:89711366-89711367|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.3182373046875	2	559.316574	1116.6186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.546	1	31.546	31.046	32.046	0								0	0	0	1.7419	1	10875	10875		23.042	0	1		+		33207	13231	23084	23160	33613	33613					0.06495101333894127
RLRRGGAG	8	Unmodified	_RLRRGGAG_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7578430175781	2	421.75701	841.499467	2.5878	0.0010914	-2.5886	-0.0010918	-0.00084326	-3.5565E-07	421.7556710780453	34.172	0.45331	34.172	34.069	34.522	0					19	9	3	0	0	0	0.75243	1	13085	13085		26.796	0	1	916020	+		33208	15070	23085	23161	33614	33614					0.07237695491369323
RLRSPCPQ	8	Unmodified	_RLRSPCPQ_					0	0	0			REV__ENST00000375994.6_1_20:30408114-30409309:+|nuORF	REV__ENST00000375994.6_1_20:30408114-30409309:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7591247558594	2	478.758361	955.502169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.659	1	15.659	15.159	16.159	0								0	0	0	1.7419	1	3559	3559		15.642	1.5047	1		+		33209	18712	23086	23162	33615	33615					0.022637828340066335
RLRWTKKA	8	Unmodified	_RLRWTKKA_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8323974609375	2	529.832717	1057.65088	-1.1915	-0.00063131	1.0135	0.00053698	-0.17805	-9.4338E-05	529.833302859963	24.994	0.14967	24.994	24.892	25.042	0					8	3	3	0	0	0	0.66095	1	7868	7868		29.15	7.1897	1	355320			33210	1363	23087	23163	33616	33616					0.12436256799219336
RLSEKSVE	8	Unmodified	_RLSEKSVE_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2629699707031	2	474.261456	946.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.316	1	40.316	39.816	40.816	0								0	0	0	1.7419	1	14335	14335		31.955	2.8053	1				33211	11500	23088	23164	33617	33617					0.032965795465202063
RLSHNRIQ	8	Unmodified	_RLSHNRIQ_					0	0	0		TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant;nc|ENSG00000174130|Q9Y2C9-2|TLR6;TLR6|p.E667Kfs*65|1|0.4|ENSG00000174130|chr4:38827476-38827476|T/-|frameshift_variant;ENSG00000174130|ENST00000508254|TLR6	TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant	TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2952270507812	2	512.293956	1022.57336	-0.31921	-0.00016353	2.5759	0.0013196	2.2567	0.0011561	512.2954238322155	18.425	0.29939	18.425	18.204	18.503	0					16	11	2	0	0	0	0.61925	1	4824	4824		53.351	17.733	1	97493			33212	6471	23089	23165	33618	33618					0.0629761886302731
RLSLELELK	9	Unmodified	_RLSLELELK_					0	0	0			REV__KDM7A|p.R97Gfs*41|1|0.08|ENSG00000006459|chr7:140133648-140133648|T/-|frameshift_variant	REV__KDM7A|p.R97Gfs*41|1|0.08|ENSG00000006459|chr7:140133648-140133648|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.8367919921875	2	550.837331	1099.66011	0.2995	0.00016497	1.2249	0.00067469	1.5243	0.00083967	550.8378447599994	37.651	0.275	37.651	37.557	37.832	0					34	15	3	0	0	0	0.16806	1	12709	12709		65.465	5.3471	1	1058400	+		33213	20780	23090	23166	33619	33619					0.11426560574227551
RLSLRWGA	8	Unmodified	_RLSLRWGA_					0	0	0			REV__ENST00000315150.9_1_3:128809685-128809853:-|nuORF	REV__ENST00000315150.9_1_3:128809685-128809853:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.78192138671875	2	479.782693	957.550834	-1.4066	-0.00067485	-0.14674	-7.0402E-05	-1.5533	-0.00074526	479.7825484474132	39.383	0.11775	39.383	39.309	39.427	0					9	6	2	0	0	0	0.7976	1	13236	13236		20.947	0	1	149640	+		33214	18296	23091	23167	33620	33620					0.07036019465408572
RLSQSSETF	9	Unmodified	_RLSQSSETF_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|242|1|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|242|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7639770507812	2	527.76182	1053.50909	3.4733	0.0018331	0.8602	0.00045398	4.3335	0.0022871	527.7621611810123	33.98	0.74706	33.98	33.825	34.572	0					33	15	5	0	0	0	0.16002	1	12959	12959		66.429	0.6261	1	10644000	+		33215	20727	23092	23168	33621	33621					-0.015526258044474162
RLSRATRKA	9	Unmodified	_RLSRATRKA_					0	0	0		ENSG00000169860|ENST00000305097|P2RY1	ENSG00000169860|ENST00000305097|P2RY1	ENSG00000169860|ENST00000305097|P2RY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8323974609375	2	529.830706	1057.64686	3.4444	0.0018249	-0.12748	-6.7541E-05	3.3169	0.0017574	529.8306736534822	25.085	0.2679	25.085	24.979	25.247	0					14	5	4	0	0	0	0.14578	1	8748	8748		62.107	17.73	1	3145700			33216	6189	23093	23169	33622	33622					0.12034167305523624
RLSSWCLK	8	Unmodified	_RLSSWCLK_					0	0	0		ENST00000493467.5_1_9:135785858-135804259:-|nuORF;TSC1|p.L463*|1|0.4|ENSG00000165699|chr9:132906781-132906781|A/-|frameshift_variant;TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant;nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1;TSC1|p.L203Cfs*7|1|0.29|ENSG00000165699|chr9:132921874-132921874|A/-|frameshift_variant	ENST00000493467.5_1_9:135785858-135804259:-|nuORF	ENST00000493467.5_1_9:135785858-135804259:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7718505859375	2	496.770937	991.527321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.656	1	15.656	15.156	16.156	0								0	0	0	1.7419	1	4324	4324		60.972	0	1				33217	5823	23094	23170	33623	33623					0.031218376365814038
RLTAPPLQ	8	Unmodified	_RLTAPPLQ_					0	0	0		ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2714538574219	2	448.271627	894.528701	-0.33008	-0.00014796	-0.090157	-4.0415E-05	-0.42023	-0.00018838	448.27158229540106	28.841	0.2306	28.841	28.75	28.981	0					8	5	2	0	0	0	0.65148	1	9638	9638		40.778	1.5253	1	281190			33218	8862	23095	23171	33624	33624					0.07721794996984954
RLTINYNEM	9	Unmodified	_RLTINYNEM_					0	0	0			REV__CFH|p.A1180T|1|0.06|ENSG00000000971|chr1:196747155-196747155|G/A|missense_variant	REV__CFH|p.A1180T|1|0.06|ENSG00000000971|chr1:196747155-196747155|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.2852172851562	2	577.287148	1152.55974	-0.12402	-7.1598E-05	-2.895	-0.0016713	-3.0191	-0.0017429	577.2859844750737	20.055	0.091652	20.055	19.993	20.085	0					11	3	4	0	0	0	0.30841	1	5531	5531		34.173	0	1	258240	+		33219	12445	23096	23172	33625	33625					-0.010434197510903687
RLTKHTTT	8	Unmodified	_RLTKHTTT_					0	0	0			REV__SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	REV__SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2787170410156	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.411	1	48.411	47.911	48.911	0								0	0	0	1.7419	1	17616	17616		23.042	2.0956	1		+		33220	16681	23097	23173	33626	33626					0.06031992020314192
RLTLKEQP	8	Unmodified	_RLTLKEQP_					0	0	0		nc|ENSG00000096996|P42701-3|IL12RB1;IL12RB1|p.Y481Lfs*8|1|0.07|ENSG00000096996|chr19:18066583-18066584|-/A|frameshift_variant;nc|ENSG00000096996|P42701-2|IL12RB1;ENSG00000096996|ENST00000593993|IL12RB1;ENSG00000204613|ENST00000449742|TRIM10	nc|ENSG00000096996|P42701-3|IL12RB1	nc|ENSG00000096996|P42701-3|IL12RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7951965332031	2	492.795466	983.57638	0.60261	0.00029696	-1.2903	-0.00063584	-0.68767	-0.00033888	492.7948896513547	19.322	2.4084	19.322	19.066	21.475	0					87	48	2	0	0	0	0.62915	1	6343	6343		44.377	0.26039	1	2209800			33221	1922	23098	23174	33627	33627					0.08393449197171776
RLTRSSTTCE	10	Unmodified	_RLTRSSTTCE_					0	0	0		ENST00000290231.10_1_20:44692028-44693736:-|nuORF	ENST00000290231.10_1_20:44692028-44693736:-|nuORF	ENST00000290231.10_1_20:44692028-44693736:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.28564453125	2	577.285137	1152.55572	-0.38875	-0.00022442	0.56867	0.00032828	0.17992	0.00010386	577.2859180182402	20.255	0.21959	20.255	20.145	20.364	0					12	4	4	0	0	0	0.33468	1	6545	6545		60.118	5.3419	1	1878100			33222	8433	23099	23175	33628	33628					-0.014455092447860807
RLTSWSRW	8	Unmodified	_RLTSWSRW_					0	0	0		ENST00000238823.12_1_2:33824236-33824305:-|nuORF	ENST00000238823.12_1_2:33824236-33824305:-|nuORF	ENST00000238823.12_1_2:33824236-33824305:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.294921875	2	546.290882	1090.56721	0.4312	0.00023556	4.3434	0.0023728	4.7746	0.0026083	546.2947417461753	21.429	0.17886	21.429	21.34	21.518	0					14	4	5	0	0	0	0.28427	1	6815	6815		87.754	8.0417	1	1360100			33223	8213	23100	23176	33629	33629					0.0255510063152542
RLTVCMCVR	9	Carbamidomethyl (C),Oxidation (M)	_RLTVCM(Oxidation (M))C(Carbamidomethyl (C))VR_	RLTVC(0.141)MC(0.859)VR	RLTVCM(1)CVR	RLTVC(-7.8)MC(7.8)VR	RLTVCM(80)CVR	0	1	1			REV__ENST00000344691.8_1_21:36260285-36260417:-|nuORF	REV__ENST00000344691.8_1_21:36260285-36260417:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.2852783203125	2	577.285571	1152.55659	-0.072659	-4.1945E-05	-0.59333	-0.00034252	-0.66599	-0.00038447	577.2854946674387	20.33	0.15815	20.33	20.275	20.433	0					10	3	4	0	0	0	0.098791	1	6300	6300		79.713	13.283	2	1567500	+		33224	18475	23101	23177	33630	33630	657	690			-0.013587094010745204
RLTVGPVT	8	Unmodified	_RLTVGPVT_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.758056640625	2	421.758352	841.502152	-2.5671	-0.0010827	1.6622	0.00070105	-0.90489	-0.00038164	421.75905934938527	27.883	0.13585	27.883	27.816	27.952	0					7	3	3	0	0	0	0.70055	1	9199	9199		33.516	6.7195	1	86673			33225	3611	23102	23178	33631	33631					0.0750610610567719
RLVAAAEL	8	Unmodified	_RLVAAAEL_					0	0	0			REV__GDF7|p.R228Afs*41|1|0.5|ENSG00000143869|chr2:20670747-20670747|C/-|frameshift_variant	REV__GDF7|p.R228Afs*41|1|0.5|ENSG00000143869|chr2:20670747-20670747|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.75750732421875	2	421.758352	841.502152	-1.2187	-0.00051398	0.38348	0.00016174	-0.83519	-0.00035225	421.75842919574916	34.007	0.1858	34.007	33.963	34.149	0					14	7	3	0	0	0	0.61938	1	11451	11451		45.952	0	1	160930	+		33226	15213	23103	23179	33632	33632					0.07506106105654453
RLVHIHSP	8	Unmodified	_RLVHIHSP_					0	0	0			REV__ENSG00000196118|ENST00000543610|CFAP119	REV__ENSG00000196118|ENST00000543610|CFAP119	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7813720703125	2	479.782693	957.550834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.355	1	39.355	38.855	39.855	0								0	0	0	1.7419	1	14034	14034		40.573	2.7611	1		+		33227	17226	23104	23180	33633	33633					0.0703601946541994
RLVPCYQH	8	Unmodified	_RLVPCYQH_					0	0	0			REV__BACH2|p.R728Q|1|0.2|ENSG00000112182|chr6:89932751-89932751|C/T|missense_variant	REV__BACH2|p.R728Q|1|0.2|ENSG00000112182|chr6:89932751-89932751|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2637634277344	2	508.260736	1014.50692	0.89677	0.00045579	-0.05915	-3.0063E-05	0.83762	0.00042573	508.2610898900881	35.818	0.1645	35.818	35.711	35.876	0					6	4	2	0	0	0	0.66372	1	13463	13463		38.806	5.9937	1	195910	+		33228	12273	23105	23181	33634	33634					0.0002466697676481999
RLVRKCKRQ	9	Unmodified	_RLVRKCKRQ_					0	0	0			REV__ENST00000275364.7_1_7:2768712-2768916:-|nuORF	REV__ENST00000275364.7_1_7:2768712-2768916:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.2472839355469	3	396.248631	1185.72406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.618	1	16.618	16.118	17.118	0								0	0	0	0.3693	1	4784	4784		19.997	0.73409	1		+		33229	18118	23106	23182	33635	33635					0.13863062250175062
RLVVNNHR	8	Unmodified	_RLVVNNHR_					0	0	0		nc|ENSG00000106327|Q9UP52-2|TFR2;ENST00000476304.5_1_7:100218482-100231271:-|nuORF;nc|ENSG00000106327|Q9UP52-3|TFR2;ENSG00000106327|ENST00000223051|TFR2;TFR2|p.R396Q|1|0.38|ENSG00000106327|chr7:100630972-100630972|C/T|missense_variant;ENST00000462090.5_1_7:100225070-100228611:-|nuORF;ENST00000465294.5_1_7:100225070-100228611:-|nuORF;TFR2|p.R704Tfs*88|1|0.29|ENSG00000106327|chr7:100626789-100626790|-/T|frameshift_variant	nc|ENSG00000106327|Q9UP52-2|TFR2	nc|ENSG00000106327|Q9UP52-2|TFR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53424072265625	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.773	1	47.773	47.273	48.273	0								0	0	0	1.7419	1	14594	14594		30.504	2.4222	1				33230	2433	23107	23183	33636	33636					0.0754192272564751
RLWRIGLVV	9	Unmodified	_RLWRIGLVV_					0	0	0			REV__RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	REV__RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.3585815429688	2	556.358568	1110.70258	-0.12487	-6.9475E-05	0.11994	6.6728E-05	-0.0049366	-2.7465E-06	556.3584658855993	35.187	0.36606	35.187	34.986	35.352	0					16	10	2	0	0	0	0.49003	1	13600	13600		33.516	1.8813	1	85090	+		33231	17747	23108	23184	33637	33637					0.15166000493127285
RLYALEETF	9	Unmodified	_RLYALEETF_					0	0	0			REV__ENSG00000167916|ENST00000264651|KRT24	REV__ENSG00000167916|ENST00000264651|KRT24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2982788085938	2	571.298039	1140.58152	3.4064	0.0019461	-3.4637	-0.0019788	-0.057273	-3.272E-05	571.2960283293646	39.058	0.28987	39.058	38.953	39.243	0					11	6	2	0	0	0	0.39215	1	15417	15417		42.396	4.5846	1	104090	+	+	33232	12608	23109	23185	33638	33638					0.016857082691331016
RLYREKKSAS	10	Unmodified	_RLYREKKSAS_					0	0	0		LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2	LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant	LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.23822021484375	3	413.238566	1236.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.866	1	45.866	45.366	46.366	0								0	0	0	0.41767	1	18376	18376		25.126	2.5644	1				33233	3693	23110	23186	33639	33639					0.08498982065998462
RMAVSVMR	8	Oxidation (M)	_RMAVSVM(Oxidation (M))R_		RMAVSVM(1)R		RM(-69)AVSVM(69)R	0	0	1			REV__FPR3|p.F293Lfs*21|1|0.42|ENSG00000187474|chr19:51824622-51824622|T/-|frameshift_variant	REV__FPR3|p.F293Lfs*21|1|0.42|ENSG00000187474|chr19:51824622-51824622|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2559814453125	2	483.254597	964.494641	2.4189	0.0011689	0.76361	0.00036902	3.1825	0.0015379	483.25486253658437	25.339	1.2045	25.339	25.127	26.332	0					50	22	4	0	0	0	0.23898	1	8844	8844		116.9	37.453	2	41258000	+		33234	17120	23111	23187	33640	33640		652			0.010973072420938479
RMHRPARK	8	Unmodified	_RMHRPARK_					0	0	0		nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000527039.1_1_11:209766-212514:+|nuORF;ENST00000530149.1_1_11:212394-212514:+|nuORF	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	351.2064208984375	3	351.206655	1050.59813	-0.076675	-2.6929E-05	-0.67448	-0.00023688	-0.75116	-0.00026381	351.2064380156221	21.417	0.48556	21.417	21.2	21.685	0					16	11	2	0	0	0	0.79719	1	6166	6166		20.947	20.947	1	135590			33235	6692	23112	23188	33641	33641					0.07485975464760486
RMHYGKIY	8	Unmodified	_RMHYGKIY_					0	0	0			REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2765502929688	2	534.276386	1066.53822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.152	1	52.152	51.652	52.652	0								0	0	0	1.7419	1	20301	20301		37.028	0	1		+		33236	21732	23113	23189	33642	33642					0.007612400108882866
RMIYLQTLLA	10	Unmodified	_RMIYLQTLLA_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.3561401367188	2	611.354834	1220.69511	2.9519	0.0018047	-0.43121	-0.00026362	2.5207	0.001541	611.3544402529026	53.752	1.0149	53.752	53.384	54.398	0					119	61	3	0	0	0	0.67098	1	20592	20592		25.574	1.0549	1	217460			33237	7157	23114	23190	33643	33643					0.0935948011056098
RMKEEKEWMM	10	Unmodified	_RMKEEKEWMM_					0	0	0			REV__nc|ENSG00000273756|P0DX02|GOLGA6L26	REV__nc|ENSG00000273756|P0DX02|GOLGA6L26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.22039794921875	3	466.550659	1396.63015	0.64387	0.0003004	1.1428	0.00053318	1.7867	0.00083358	466.55113875545146	19.155	0.51272	19.155	18.98	19.492	0					21	10	3	0	0	0	0.7005	1	5924	5924		15.333	0	1	2546400	+		33238	17818	23115	23191	33644	33644					-0.05230205749285233
RMKVCQATY	9	Unmodified	_RMKVCQATY_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.77783203125	2	550.272986	1098.53142	1.8345	0.0010095	2.8381	0.0015617	4.6726	0.0025712	550.2745808504476	43.043	0.22035	43.043	42.955	43.175	0					19	11	3	0	0	0	0.48389	1	16255	16255		34.173	8.5985	1	118350	+		33239	21124	23116	23192	33645	33645					-0.013904409320048217
RMLLCFAFLW	10	Unmodified	_RMLLCFAFLW_					0	0	0		ENST00000488903.1_1_1:230203027-230227371:+|nuORF;GALNT2|p.G27Afs*115|1|0.24|ENSG00000143641|chr1:230067355-230067355|G/-|frameshift_variant;GALNT2|p.N516Mfs*16|1|0.24|ENSG00000143641|chr1:230274548-230274548|A/-|frameshift_variant;ENSG00000143641|ENST00000366672|GALNT2	ENST00000488903.1_1_1:230203027-230227371:+|nuORF	ENST00000488903.1_1_1:230203027-230227371:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	650.3440551757812	2	650.340672	1298.66679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.138	1	16.138	15.638	16.638	0								0	0	0	0.4201	1	3625	3625		17.365	0.64758	1				33240	4574	23117	23193	33646	33646					0.029404589296063932
RMLVATLVE	9	Unmodified	_RMLVATLVE_					0	0	0			REV__nc|ENSG00000167483|Q86XR2-5|NIBAN3	REV__nc|ENSG00000167483|Q86XR2-5|NIBAN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2996826171875	2	516.299527	1030.5845	1.528	0.00078889	-0.013945	-7.1997E-06	1.514	0.00078169	516.2992648879928	43.799	0.18275	43.799	43.699	43.882	0					10	5	3	0	0	0	0.37197	1	17539	17539		44.117	3.3386	1	66376	+		33241	16191	23118	23194	33647	33647					0.07043260122304673
RMMMQLKEL	9	Unmodified	_RMMMQLKEL_					0	0	0		ENST00000325083.12_1_8:17815084-17817658:+|nuORF	ENST00000325083.12_1_8:17815084-17817658:+|nuORF	ENST00000325083.12_1_8:17815084-17817658:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.3057250976562	2	590.305972	1178.59739	-0.12039	-7.107E-05	0.38153	0.00022522	0.26114	0.00015415	590.3060681500189	31.597	0.16306	31.597	31.538	31.702	0					6	3	2	0	0	0	0.17854	1	11942	11942		64.207	13.416	1	129640			33242	8640	23119	23195	33648	33648					0.015236319185305547
RMNHFRVY	8	Oxidation (M)	_RM(Oxidation (M))NHFRVY_		RM(1)NHFRVY		RM(75)NHFRVY	0	0	1		nc|ENSG00000164556|Q6ZVS7|CFAP144P1	nc|ENSG00000164556|Q6ZVS7|CFAP144P1	nc|ENSG00000164556|Q6ZVS7|CFAP144P1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.781494140625	2	569.782367	1137.55018	-1.3362	-0.00076133	0.43917	0.00025023	-0.89702	-0.0005111	569.7826447443234	36.759	0.27082	36.759	36.651	36.921	0					19	12	2	0	0	0	0.36926	1	13142	13142		74.517	10.309	1	198470			33243	11619	23120	23196	33649	33649		453			-0.01309143245953237
RMPLDFSNTV	10	Oxidation (M)	_RM(Oxidation (M))PLDFSNTV_		RM(1)PLDFSNTV		RM(83)PLDFSNTV	0	0	1		NLRC3|p.T226M|1|0.42|ENSG00000167984|chr16:3564260-3564260|G/A|missense_variant	NLRC3|p.T226M|1|0.42|ENSG00000167984|chr16:3564260-3564260|G/A|missense_variant	NLRC3|p.T226M|1|0.42|ENSG00000167984|chr16:3564260-3564260|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.2926635742188	2	598.29243	1194.57031	0.17082	0.0001022	-1.0354	-0.00061949	-0.86461	-0.00051729	598.2919883580453	13.009	0.31941	13.009	12.87	13.19	0					16	7	4	0	0	0	0.17315	1	3056	3056		82.75	9.8712	1	4432400			33244	11858	23121	23197	33650	33650		464			-0.019194370966715724
RMRYQNVV	8	Unmodified	_RMRYQNVV_					0	0	0			REV__ENSG00000163083|ENST00000295228|INHBB	REV__ENSG00000163083|ENST00000295228|INHBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2825927734375	2	533.284743	1064.55493	-1.3007	-0.00069366	-1.702	-0.00090767	-3.0028	-0.0016013	533.2840826828825	27.324	0.90439	27.324	27.003	27.907	0					46	22	3	0	0	0	0.49887	1	9104	9104		60.294	12.637	1	275430	+		33245	15858	23122	23198	33651	33651					0.025237408968223463
RMVKKMKK	8	Unmodified	_RMVKKMKK_					0	0	0		nc|ENSG00000196182|Q8N2I9-3|STK40;ENSG00000196182|ENST00000373132|STK40;nc|ENSG00000196182|Q8N2I9-4|STK40	nc|ENSG00000196182|Q8N2I9-3|STK40	nc|ENSG00000196182|Q8N2I9-3|STK40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8295288085938	2	524.827732	1047.64091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.712	1	23.712	23.212	24.212	0								0	0	0	1.7419	1	7161	7161		33.516	4.366	1				33246	7335	23123	23199	33652	33652					0.11899609477973172
RMWPPRALSL	10	Oxidation (M)	_RM(Oxidation (M))WPPRALSL_		RM(1)WPPRALSL		RM(48)WPPRALSL	0	0	1		ENST00000444362.2_1_1:1336293-1336503:+|nuORF	ENST00000444362.2_1_1:1336293-1336503:+|nuORF	ENST00000444362.2_1_1:1336293-1336503:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	621.8439331054688	2	621.842425	1241.6703	3.1207	0.0019406	-1.2289	-0.00076417	1.8918	0.0011764	621.8417676620975	26.623	0.57092	26.623	26.265	26.836	0					27	11	3	0	0	0	0.47859	1	9395	9395		47.657	11.211	1	778690			33247	9605	23124	23200	33653	33653		385			0.05912845027819458
RMYNVRIM	8	2 Oxidation (M)	_RM(Oxidation (M))YNVRIM(Oxidation (M))_		RM(1)YNVRIM(1)		RM(52)YNVRIM(52)	0	0	2		nc|ENSG00000106327|Q9UP52-2|TFR2;ENST00000476304.5_1_7:100218482-100231271:-|nuORF;nc|ENSG00000106327|Q9UP52-3|TFR2;ENSG00000106327|ENST00000223051|TFR2;ENST00000465294.5_1_7:100218482-100225153:-|nuORF;ENST00000461176.1_1_7:100224226-100225153:-|nuORF	nc|ENSG00000106327|Q9UP52-2|TFR2	nc|ENSG00000106327|Q9UP52-2|TFR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.27978515625	2	557.778436	1113.54232	0.11923	6.6505E-05	1.8759	0.0010463	1.9951	0.0011128	558.2792424858002	35.004	0.12593	35.004	34.962	35.087	0					9	5	2	0	0	0	0.57802	1	11836	11836		52.299	9.903	1	79788			33248	2433	23125	23201	33654	33654		105;106			-0.009910385577313718
RNATDAVGIVL	11	Unmodified	_RNATDAVGIVL_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.8225708007812	2	564.822212	1127.62987	1.7756	0.0010029	-1.0685	-0.00060351	0.70713	0.00039941	564.8217038949941	32.672	0.29419	32.672	32.543	32.837	0					15	7	3	0	0	0	0.65907	1	12010	12010		31.53	0	1	219880			33249	3806	23126	23202	33655	33655					0.07116201909047959
RNCPVWAAVL	10	Unmodified	_RNCPVWAAVL_					0	0	0			REV__ENST00000432334.1_1_20:19738553-19780289:+|nuORF	REV__ENST00000432334.1_1_20:19738553-19780289:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.8037719726562	2	564.802768	1127.59098	-1.0886	-0.00061483	3.3221	0.0018763	2.2335	0.0012615	564.8042923337802	31.471	0.14267	31.471	31.373	31.516	0					5	3	2	0	0	0	0.52707	1	10845	10845		42.396	0.96952	1	133100	+		33250	19175	23127	23203	33656	33656					0.03229198073677253
RNCQQQAAV	9	Unmodified	_RNCQQQAAV_					0	0	0			REV__ENST00000487913.5_1_11:47282796-47283054:+|nuORF	REV__ENST00000487913.5_1_11:47282796-47283054:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2505798339844	2	509.248357	1016.48216	3.0093	0.0015325	0.72176	0.00036755	3.7311	0.0019	509.2488798670719	24.405	0.55928	24.405	24.147	24.707	0					25	11	4	0	0	0	0.32741	1	8430	8430		47.916	0.25827	1	1097500	+		33251	12954	23128	23204	33657	33657					-0.025420128966061384
RNEASDIAEPS	11	Unmodified	_RNEASDIAEPS_					0	0	0			REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.7777709960938	2	594.778199	1187.54184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.068	1	26.068	25.568	26.568	0								0	0	0	0.40299	1	9286	9286		36.447	2.2742	1		+		33252	12318	23129	23205	33658	33658					-0.04442463472241798
RNEERLAK	8	Unmodified	_RNEERLAK_					0	0	0			REV__nc|ENSG00000174015|Q8NA61-2|CBY2	REV__nc|ENSG00000174015|Q8NA61-2|CBY2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.28759765625	2	508.285797	1014.55704	1.3168	0.0006693	2.3407	0.0011897	3.6575	0.001859	508.2870676984057	37.376	0.46233	37.376	37.103	37.565	0					20	9	4	0	0	0	0.69548	1	14637	14637		34.173	0.67956	1	162530	+		33253	16542	23130	23206	33659	33659					0.050344929062816846
RNEGGESVLV	10	Unmodified	_RNEGGESVLV_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.77490234375	2	530.275095	1058.53564	3.4368	0.0018224	-4.333	-0.0022977	-0.89621	-0.00047524	530.773917443141	23.032	0.36242	23.032	22.855	23.218	0					16	7	3	0	0	0	0.55603	1	7726	7726		39.253	1.4413	1	3424100			33254	5019	23131	23207	33660	33660					0.008710630869018132
RNELQTVY	8	Unmodified	_RNELQTVY_					0	0	0		nc|ENSG00000129422|Q9ULD2-6|MTUS1;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;nc|ENSG00000129422|Q9ULD2-7|MTUS1;nc|ENSG00000129422|Q9ULD2-3|MTUS1;ENST00000517413.5_1_8:17512046-17533895:-|nuORF;nc|ENSG00000129422|Q9ULD2-4|MTUS1	nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-6|MTUS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.76739501953125	2	511.766906	1021.51926	0.46145	0.00023615	-0.13261	-6.7864E-05	0.32884	0.00016829	511.76700100364553	24.369	0.16709	24.369	24.31	24.477	0					7	3	3	0	0	0	0.64096	1	8537	8537		42.474	0.078325	1	153790			33255	3597	23132	23208	33661	33661					0.009359819208043518
RNETSQSAP	9	Unmodified	_RNETSQSAP_					0	0	0			REV__MCM10|p.E240Kfs*26|1|0.13|ENSG00000065328|chr10:13175629-13175629|G/-|frameshift_variant	REV__MCM10|p.E240Kfs*26|1|0.13|ENSG00000065328|chr10:13175629-13175629|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.23504638671875	2	495.23597	988.457387	-0.40656	-0.00020135	-1.3174	-0.00065244	-1.724	-0.00085378	495.23541863982973	25.412	0.38406	25.412	25.32	25.704	0					21	9	3	0	0	0	0.4966	1	8688	8688		32.812	3.6629	1	281820	+		33256	13114	23133	23209	33662	33662					-0.03730369498339314
RNGGGYAS	8	Unmodified	_RNGGGYAS_					0	0	0			REV__nc|ENSG00000075043|O43526-4|KCNQ2	REV__nc|ENSG00000075043|O43526-4|KCNQ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.18280029296875	2	391.183009	780.351465	-0.79948	-0.00031274	-1.0609	-0.00041502	-1.8604	-0.00072777	391.1825902054561	17.988	0.49123	17.988	17.895	18.386	0					25	16	4	0	0	0	0.76283	1	4611	4611		25.45	6.0902	1	2149000	+		33257	13222	23134	23210	33663	33663					-0.04749660553147805
RNGMLFILGL	10	Unmodified	_RNGMLFILGL_					0	0	0			REV__ENSG00000186675|ENST00000373359|MAGEE2	REV__ENSG00000186675|ENST00000373359|MAGEE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.330810546875	2	567.328619	1132.64269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.487	1	52.487	51.987	52.987	0								0	0	0	0.4201	1	16924	16924		23.042	1.0826	1		+		33258	17088	23135	23211	33664	33664					0.08166941767581193
RNGNNGSPR	9	Unmodified	_RNGNNGSPR_					0	0	0			REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	REV__PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2402648925781	2	486.241921	970.469289	-2.9139	-0.0014169	-0.54923	-0.00026706	-3.4632	-0.0016839	486.24162545776505	18.236	0.15514	18.236	18.18	18.335	0					9	4	3	0	0	0	0.48389	1	4724	4724		34.173	34.173	1	137510	+		33259	14168	23136	23212	33665	33665					-0.017127079644751575
RNGTRPLDLIW	11	Unmodified	_RNGTRPLDLIW_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	670.87451171875	2	670.875311	1339.73607	-1.3247	-0.00088873	0.21061	0.0001413	-1.1141	-0.00074743	670.8753844587825	26.21	0.20821	26.21	26.101	26.309	0					7	4	2	0	0	0	0.29287	1	9345	9345		45.972	1.5951	1	288280	+		33260	17405	23137	23213	33666	33666					0.07978957474369963
RNIVSELTI	9	Unmodified	_RNIVSELTI_					0	0	0		nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8064575195312	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.169	1	39.169	38.669	39.669	0								0	0	0	0.27025	1	12736	12736		40.778	1.5253	1				33261	5563	23138	23214	33667	33667					0.07745414506052839
RNKHIHKK	8	Unmodified	_RNKHIHKK_					0	0	0		ENSG00000104613|ENST00000397977|INTS10;INTS10|p.T379Hfs*7|1|0.23|ENSG00000104613|chr8:19826553-19826554|-/C|frameshift_variant	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.8281860351562	2	530.827966	1059.64138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.029	1	14.029	13.529	14.529	0								0	0	0	1.7419	1	2907	2907		12.959	0.75233	1				33262	2296	23139	23215	33668	33668					0.11394488513701617
RNLIYVSK	8	Unmodified	_RNLIYVSK_					0	0	0			REV__SF3B3|p.L140S|1|0.13|ENSG00000189091|chr16:70530766-70530766|T/C|missense_variant	REV__SF3B3|p.L140S|1|0.13|ENSG00000189091|chr16:70530766-70530766|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	331.5343017578125	3	331.534431	991.581465	0.26883	8.9128E-05	-0.21931	-7.2707E-05	0.049529	1.642E-05	331.5343018030239	28.91	0.28265	28.91	28.814	29.097	0					17	10	3	0	0	0	0.7126	1	9064	9064		26.693	4.1133	1	299560	+		33263	21509	23140	23216	33669	33669					0.08533753059805349
RNLNPKTA	8	Unmodified	_RNLNPKTA_					0	0	0		ENST00000423021.2_1_9:5112501-5112846:+|nuORF	ENST00000423021.2_1_9:5112501-5112846:+|nuORF	ENST00000423021.2_1_9:5112501-5112846:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.26470947265625	2	457.264333	912.514114	-0.46385	-0.0002121	0.11693	5.3468E-05	-0.34692	-0.00015864	457.2643629698082	54.75	0.18057	54.75	54.662	54.842	0					16	11	2	0	0	0	0.76283	1	19061	19061		25.45	3.4903	1	62932			33264	9412	23141	23217	33670	33670					0.05435722848858404
RNLNYIEF	8	Unmodified	_RNLNYIEF_					0	0	0		tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7781982421875	2	534.777274	1067.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.43	1	45.43	44.93	45.93	0								0	0	0	1.7419	1	18193	18193		60.294	8.9585	1				33265	22901	23142	23218	33671	33671					0.008925723004722386
RNLQLVRS	8	Unmodified	_RNLQLVRS_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.20147705078125	3	329.201564	984.582862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.256	1	28.256	27.756	28.756	0								0	0	0	1.7419	1	8806	8806		19.104	3.0967	1				33266	2200	23143	23219	33672	33672					0.08995387148559075
RNLSEDLV	8	Unmodified	_RNLSEDLV_					0	0	0			REV__ENSG00000138696|ENST00000515059|BMPR1B	REV__ENSG00000138696|ENST00000515059|BMPR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.242431640625	2	473.253631	944.49271	-0.5797	-0.00027435	0.11298	5.3468E-05	-0.46672	-0.00022088	473.2535815665914	16.459	0.16423	16.459	16.351	16.515	0					5	3	2	0	0	0	0.75243	1	4552	4552		26.796	1.3459	1	334000	+		33267	14996	23144	23220	33673	33673					0.018242930294604776
RNMDWVSTQLQ	11	Unmodified	_RNMDWVSTQLQ_					0	0	0		nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	nc|ENSG00000149485|O60427-2|FADS1	nc|ENSG00000149485|O60427-2|FADS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	689.3287353515625	2	689.332618	1376.65068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.457	1	17.457	16.957	17.957	0								0	0	0	0.42444	1	4377	4377		31.634	1.3165	1				33268	4887	23145	23221	33674	33674					-0.022575757735921798
RNNFLIQMFH	10	Unmodified	_RNNFLIQMFH_					0	0	0		ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	660.3359985351562	2	660.337507	1318.66046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.013	1	35.013	34.513	35.513	0								0	0	0	0.4201	1	11470	11470		20.947	0.95016	1				33269	2525	23146	23222	33675	33675					0.013876570224283569
RNPIYTVR	8	Unmodified	_RNPIYTVR_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000476354.2_1_10:79575932-79579275:-|nuORF	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.79351806640625	2	509.793258	1017.57196	1.1819	0.00060255	-0.30746	-0.00015674	0.87448	0.00044581	509.7927565800442	24.554	0.71071	24.554	24.246	24.957	0					40	14	4	0	0	0	0.32815	1	8595	8595		79.451	5.196	1	3285300			33270	799	23147	23223	33676	33676					0.06387984774266897
RNPNWLMA	8	Oxidation (M)	_RNPNWLM(Oxidation (M))A_		RNPNWLM(1)A		RNPNWLM(42)A	0	0	1			REV__ENST00000269142.9_1_18:23806727-23806883:+|nuORF	REV__ENST00000269142.9_1_18:23806727-23806883:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2503662109375	2	509.250369	1016.48618	-0.51828	-0.00026393	0.93166	0.00047445	0.41338	0.00021051	509.2508627165763	24.251	0.36348	24.251	24.018	24.382	0					21	11	2	0	0	0	0.64096	1	7391	7391		42.474	6.0277	1	192540	+		33271	18092	23148	23224	33677	33677		677			-0.02139923402887689
RNRATLTAK	9	Unmodified	_RNRATLTAK_					0	0	0			REV__nc|ENSG00000188343|A1XBS5-2|CIBAR1	REV__nc|ENSG00000188343|A1XBS5-2|CIBAR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.8081665039062	2	515.809439	1029.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.859	1	23.859	23.359	24.359	0								0	0	0	0.31222	1	6961	6961		25.574	0	1		+		33272	17169	23149	23225	33678	33678					0.09070772177278741
RNRGKTPG	8	Unmodified	_RNRGKTPG_					0	0	0			REV__ENST00000476764.2_1_3:197281466-197282409:-|nuORF	REV__ENST00000476764.2_1_3:197281466-197282409:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.25537109375	2	443.2543	884.494047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.296	1	23.296	22.796	23.796	0								0	0	0	1.7419	1	8007	8007		40.573	3.5441	1		+		33273	19543	23150	23226	33679	33679					0.047179719088944694
RNSCKLMK	8	Unmodified	_RNSCKLMK_					0	0	0			REV__CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	REV__CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.1783142089844	3	327.177373	978.510291	3.6762	0.0012028	-0.71303	-0.00023329	2.9631	0.00096947	327.17714791981814	16.415	0.10617	16.415	16.352	16.458	0					5	3	2	0	0	0	0.75323	1	3938	3938		26.693	2.4902	1	80380	+		33274	12422	23151	23227	33680	33680					0.020175937591261572
RNSDSTHE	8	Unmodified	_RNSDSTHE_					0	0	0			REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2041931152344	2	473.20467	944.394786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.613	1	14.613	14.113	15.113	0								0	0	0	1.7419	1	3127	3127		12.959	3.4886	1		+		33275	17138	23152	23228	33681	33681					-0.0796351556650734
RNSTAVVVVG	10	Unmodified	_RNSTAVVVVG_					0	0	0			REV__ENSG00000135537|ENST00000368977|AFG1L	REV__ENSG00000135537|ENST00000368977|AFG1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2914123535156	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.789	1	37.789	37.289	38.289	0								0	0	0	0.37702	1	12765	12765		32.812	0	1		+		33276	14809	23153	23229	33682	33682					0.06628261191815454
RNSVEFITK	9	Unmodified	_RNSVEFITK_					0	0	0			REV__tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1	REV__tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.3055419921875	2	547.303655	1092.59276	0.73574	0.00040267	0.31874	0.00017445	1.0545	0.00057712	547.3038425415599	26.385	0.40987	26.385	26.084	26.493	0					16	8	3	0	0	0	0.10915	1	9428	9428		77.318	4.4383	1	301790	+		33277	22007	23154	23230	33683	33683					0.050165303632638825
RPAGLPEKY	9	Unmodified	_RPAGLPEKY_					0	0	0		ENSG00000173432|ENST00000356524|SAA1;ENSG00000134339|ENST00000256733|SAA2	ENSG00000173432|ENST00000356524|SAA1	ENSG00000173432|ENST00000356524|SAA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7881469726562	2	515.787641	1029.56073	1.3181	0.00067986	-0.68644	-0.00035406	0.63166	0.0003258	515.7872125063027	23.505	0.44084	23.505	23.372	23.812	0					37	15	3	0	0	0	0.24334	1	6810	6810		56.434	17.181	1	360800			33278	3914	23155	23231	33684	33684					0.04713162680127425
RPAGLPEKY	9	Unmodified	_RPAGLPEKY_					0	0	0		ENSG00000173432|ENST00000356524|SAA1;ENSG00000134339|ENST00000256733|SAA2	ENSG00000173432|ENST00000356524|SAA1	ENSG00000173432|ENST00000356524|SAA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7880859375	2	515.787641	1029.56073	0.17223	8.8832E-05	-0.0029998	-1.5472E-06	0.16923	8.7284E-05	515.7876492124249	23.739	0.86147	23.739	23.535	24.397	0					42	17	4	0	0	0	0.19952	1	8081	8081		61.691	2.9093	1	2480400			33279	3914	23155	23231	33685	33685					0.04713162680127425
RPALLSPGPGR	11	Unmodified	_RPALLSPGPGR_					0	0	0			REV__ENSG00000198455|ENST00000374888|ZXDB	REV__ENSG00000198455|ENST00000374888|ZXDB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.2242126464844	3	374.224368	1119.65128	0.2462	9.2135E-05	-0.38227	-0.00014305	-0.13606	-5.0919E-05	374.22422385716436	19.189	0.21447	19.189	19.083	19.297	0					9	4	3	0	0	0	0.45905	1	6012	6012		47.228	1.3196	1	739030	+		33280	17400	23156	23232	33686	33686					0.09623631728413784
RPAPVEVTY	9	Unmodified	_RPAPVEVTY_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2797241210938	2	516.279649	1030.54475	0.036711	1.8953E-05	0.14323	7.3947E-05	0.17994	9.29E-05	516.2796890557547	30.319	0.70381	30.319	30.038	30.742	0					41	17	3	0	0	0	0.055856	1	10888	10888		93.195	24.409	1	1143400			33281	2726	23157	23233	33687	33687					0.030694564432451443
RPAPVEVTY	9	Unmodified	_RPAPVEVTY_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2796630859375	2	516.279649	1030.54475	1.4629	0.00075528	-1.1979	-0.00061843	0.26507	0.00013685	516.2790545228511	30.309	0.83421	30.309	29.993	30.827	0					44	18	3	0	0	0	0.098791	1	11326	11326		79.713	22.992	1	3125600			33282	2726	23157	23233	33688	33688					0.030694564432451443
RPAPVEVTY	9	Unmodified	_RPAPVEVTY_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2798461914062	2	516.279649	1030.54475	-1.5091	-0.00077912	1.6196	0.00083616	0.11048	5.7037E-05	516.2804404483834	30.066	0.5848	30.066	29.919	30.504	0					36	14	3	0	0	0	0.10915	1	10215	10215		77.318	22.541	1	657670			33283	2726	23157	23233	33689	33689					0.030694564432451443
RPASVLTV	8	Unmodified	_RPASVLTV_					0	0	0			REV__ENST00000496583.1_1_19:54695101-54695536:+|nuORF	REV__ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.7582092285156	2	421.758352	841.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.843	1	27.843	27.343	28.343	0								0	0	0	1.7419	1	8917	8917		47.916	5.4411	1		+		33284	16384	23158	23234	33690	33690					0.07506106105665822
RPCLLESP	8	Unmodified	_RPCLLESP_					0	0	0			REV__nc|ENSG00000274211|O14512|SOCS7	REV__nc|ENSG00000274211|O14512|SOCS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7453918457031	2	457.741845	913.469137	4.3181	0.0019766	2.4788	0.0011347	6.7969	0.0031112	457.7432053955777	21.135	0.16924	21.135	21.04	21.209	0					8	5	2	0	0	0	0.60719	1	6014	6014		47.916	0	1	134010	+		33285	17819	23159	23235	33691	33691					0.0089415599129552
RPDEKAIMTY	10	Unmodified	_RPDEKAIMTY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	612.307861328125	2	612.308081	1222.60161	1.5913	0.00097437	-1.5846	-0.00097029	0.0066583	4.0769E-06	612.3066935946174	28.625	0.20271	28.625	28.445	28.648	0					12	9	2	0	0	0	0.68774	1	8961	8961		23.523	2.5758	1	37566			33286	3641;1482	23160	23236	33692	33692					-0.0007886406253874156
RPDEKAIMTY	10	Unmodified	_RPDEKAIMTY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.3079833984375	2	612.308081	1222.60161	0.055361	3.3898E-05	-0.14012	-8.5795E-05	-0.084757	-5.1897E-05	612.3079601789279	28.772	0.53201	28.772	28.686	29.218	0					40	13	4	0	0	0	0.16075	1	10202	10202		84.817	30.095	1	444300			33287	3641;1482	23160	23236	33693	33693					-0.0007886406253874156
RPDEKAIMTY	10	Unmodified	_RPDEKAIMTY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	612.3076171875	2	612.308081	1222.60161	-0.63584	-0.00038933	1.6245	0.00099467	0.98862	0.00060534	612.3087999528598	28.548	0.33947	28.548	28.463	28.803	0					24	13	2	0	0	0	0.30252	1	9214	9214		66.962	31.81	1	108630			33288	3641;1482	23160	23236	33694	33694					-0.0007886406253874156
RPDEKAIMTY	10	Unmodified	_RPDEKAIMTY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.3082275390625	2	612.308081	1222.60161	0.93659	0.00057348	-0.45709	-0.00027988	0.4795	0.0002936	612.3075694157757	28.82	0.95777	28.82	28.565	29.522	0					52	20	4	0	0	0	0.071575	1	10617	10617		102.06	45.628	1	737350			33289	3641;1482	23160	23236	33695	33695					-0.0007886406253874156
RPDEKAIMTY	10	Unmodified	_RPDEKAIMTY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.308837890625	2	612.308081	1222.60161	1.3122	0.00080346	-0.89258	-0.00054654	0.41961	0.00025693	612.3074373848614	28.752	0.71614	28.752	28.542	29.258	0					42	14	4	0	0	0	0.0093015	1	10443	10443		145.46	77.967	1	1133900			33290	3641;1482	23160	23236	33696	33696					-0.0007886406253874156
RPDQKRELRYL	11	Unmodified	_RPDQKRELRYL_					0	0	0		ENST00000395134.3_1_6:33257397-33257646:+|nuORF	ENST00000395134.3_1_6:33257397-33257646:+|nuORF	ENST00000395134.3_1_6:33257397-33257646:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	737.4160766601562	2	737.417874	1472.82119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.766	1	42.766	42.266	43.266	0								0	0	0	0.45674	1	16772	16772		15.333	1.196	1				33291	9189	23161	23237	33697	33697					0.103697029401701
RPDRSRAA	8	Unmodified	_RPDRSRAA_					0	0	0		ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF	ENST00000511502.5_1_1:1550926-1563560:+|nuORF	ENST00000511502.5_1_1:1550926-1563560:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7582092285156	2	464.757207	927.499861	0.084301	3.9179E-05	3.0661	0.001425	3.1504	0.0014642	464.75837894434636	19.96	0.1807	19.96	19.862	20.043	0					8	5	2	0	0	0	0.72381	1	5264	5264		30.504	3.8107	1	43074			33292	10199	23162	23238	33698	33698					0.03321070420554406
RPDVAFEPHGQ	11	Unmodified	_RPDVAFEPHGQ_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	626.8046875	2	626.807094	1251.59963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.56	1	18.56	18.06	19.06	0								0	0	0	0.44027	1	5717	5717		28.081	2.5074	1		+		33293	12458	23163	23239	33699	33699					-0.016101567561463526
RPEAPSLR	8	Unmodified	_RPEAPSLR_					0	0	0		ENST00000543264.6_1_19:4282969-4288256:+|nuORF;ENST00000599689.1_1_19:4282969-4290466:+|nuORF	ENST00000543264.6_1_19:4282969-4288256:+|nuORF	ENST00000543264.6_1_19:4282969-4288256:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.264404296875	2	463.264333	924.514114	0.060259	2.7916E-05	0.028241	1.3083E-05	0.0885	4.0999E-05	463.2644801050669	14.798	0.18675	14.798	14.704	14.891	0					6	4	2	0	0	0	0.72381	1	3673	3673		30.504	0	1	135240			33294	10558	23164	23240	33700	33700					0.04883722848853722
RPEDRSDAEP	10	Unmodified	_RPEDRSDAEP_					0	0	0		ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.2696533203125	2	586.270541	1170.52653	0.088546	5.1912E-05	-1.5144	-0.00088786	-1.4259	-0.00083595	586.2697234542758	12.715	0.18379	12.715	12.653	12.837	0					14	5	4	0	0	0	0.49411	1	2726	2726		45.972	3.108	1	567370			33295	2812	23165	23241	33701	33701					-0.051913302694401864
RPEPKPPAP	9	Unmodified	_RPEPKPPAP_					0	0	0			REV__ENSG00000182952|ENST00000377575|HMGN4	REV__ENSG00000182952|ENST00000377575|HMGN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.1907958984375	3	330.190665	987.550165	0.54551	0.00018012	-0.1483	-4.8969E-05	0.39721	0.00013115	330.1906099500584	17.575	1.2787	17.575	17.466	18.745	0					48	25	2	0	0	0	0.51991	1	5720	5720		30.318	2.2362	1	320630	+		33296	16902	23166	23242	33702	33702					0.0558918002569726
RPEQLAAGV	9	Unmodified	_RPEQLAAGV_					0	0	0			REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.763916015625	2	470.764166	939.513779	-0.61104	-0.00028766	0.38752	0.00018243	-0.22352	-0.00010523	470.76481680461285	16.776	1.563	16.776	16.691	18.254	0					67	38	6	0	0	0	0.071197	1	4605	4605		87.754	10.437	1	54819000	+		33297	17130	23167	23243	33703	33703					0.04160303128992382
RPEQLAAGV	9	Unmodified	_RPEQLAAGV_					0	0	0			REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.7640686035156	2	470.764166	939.513779	-1.3199	-0.00062136	0.82607	0.00038888	-0.49382	-0.00023247	470.76456805844504	16.512	0.68509	16.512	16.43	17.115	0					59	25	6	0	0	0	0.055856	1	3968	3968		93.195	0	1	32075000	+		33298	17130	23167	23243	33704	33704					0.04160303128992382
RPEQLAAGV	9	Unmodified	_RPEQLAAGV_					0	0	0			REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.76416015625	2	470.764166	939.513779	0.60134	0.00028309	-1.7721	-0.00083423	-1.1707	-0.00055114	470.7634629555228	16.721	0.80309	16.721	16.515	17.318	0					50	16	7	0	0	0	0.055856	1	4826	4826		93.195	5.499	1	105970000	+		33299	17130	23167	23243	33705	33705					0.04160303128992382
RPEQLAAGV	9	Unmodified	_RPEQLAAGV_					0	0	0			REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	REV__SLC18A3|p.A20D|1|0.42|ENSG00000187714|chr10:49610799-49610799|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7637634277344	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.699	1	16.699	16.199	17.199	0								0	0	0	0.035155	1	4677	4677		93.195	15.878	1		+		33300	17130	23167	23243	33706	33706					0.04160303128992382
RPESFFQQ	8	Unmodified	_RPESFFQQ_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7518920898438	2	519.753798	1037.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.964	1	26.964	26.464	27.464	0								0	0	0	1.7419	1	9714	9714		30.504	1.3541	1				33301	3511	23168	23244	33707	33707					-0.024202872506748463
RPFAVWIL	8	Unmodified	_RPFAVWIL_					0	0	0			REV__ENST00000471073.1_1_22:21354171-21355180:-|nuORF	REV__ENST00000471073.1_1_22:21354171-21355180:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.3016662597656	2	501.300188	1000.58582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.294	1	41.294	40.794	41.794	0								0	0	0	1.7419	1	13732	13732		46.766	2.2354	1		+		33302	19478	23169	23245	33708	33708					0.08555262273364406
RPFEENGACKY	11	Unmodified	_RPFEENGACKY_					0	0	0		ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant;ZFP36L1|p.S294Afs*13|1|0.33|ENSG00000185650|chr14:68789671-68789671|G/-|frameshift_variant;ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant;ZFP36L1|p.G271Vfs*36|1|0.32|ENSG00000185650|chr14:68789738-68789738|C/-|frameshift_variant;ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	657.3004760742188	2	657.300787	1312.58702	-0.11935	-7.8447E-05	-0.46238	-0.00030392	-0.58173	-0.00038237	657.3008463112318	25.94	1.1142	25.94	25.732	26.847	0					62	24	4	0	0	0	0.029346	1	8882	8882		115.23	65.79	1	654830			33303	7093	23170	23246	33709	33709					-0.05676936210693384
RPFEENGACKY	11	Unmodified	_RPFEENGACKY_					0	0	0		ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant;ZFP36L1|p.S294Afs*13|1|0.33|ENSG00000185650|chr14:68789671-68789671|G/-|frameshift_variant;ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant;ZFP36L1|p.G271Vfs*36|1|0.32|ENSG00000185650|chr14:68789738-68789738|C/-|frameshift_variant;ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	ZFP36L1|p.H177Tfs*56|1|0.79|ENSG00000185650|chr14:68790021-68790021|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	657.3014526367188	2	657.300787	1312.58702	-0.85712	-0.00056339	0.26807	0.0001762	-0.58905	-0.00038718	657.3015166500543	25.743	0.44287	25.743	25.62	26.063	0					22	10	3	0	0	0	0.051542	1	8035	8035		104.42	62.027	1	94278			33304	7093	23170	23246	33710	33710					-0.05676936210693384
RPFEQPQEY	9	Unmodified	_RPFEQPQEY_					0	0	0		ENST00000485979.1_1_3:107937380-107938376:-|nuORF;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;IFT57|p.K357Nfs*11|1|0.32|ENSG00000114446|chr3:108163703-108163703|T/-|frameshift_variant;IFT57|p.L380Sfs*4|1|0.03|ENSG00000114446|chr3:108162629-108162630|-/AACATACT|frameshift_variant;ENSG00000114446|ENST00000264538|IFT57	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.2832641601562	2	597.28292	1192.55129	0.060231	3.5975E-05	0.45258	0.00027032	0.51281	0.0003063	597.2831429811665	29.659	0.29974	29.659	29.512	29.812	0					13	7	2	0	0	0	0.15558	1	10604	10604		66.962	22.585	1	199710			33305	2850	23171	23247	33711	33711					-0.037286503960331174
RPFEQPQEY	9	Unmodified	_RPFEQPQEY_					0	0	0		ENST00000485979.1_1_3:107937380-107938376:-|nuORF;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;IFT57|p.K357Nfs*11|1|0.32|ENSG00000114446|chr3:108163703-108163703|T/-|frameshift_variant;IFT57|p.L380Sfs*4|1|0.03|ENSG00000114446|chr3:108162629-108162630|-/AACATACT|frameshift_variant;ENSG00000114446|ENST00000264538|IFT57	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.2832641601562	2	597.28292	1192.55129	-1.8355	-0.0010963	1.8991	0.0011343	0.063561	3.7964E-05	597.2838702184895	29.437	0.24944	29.437	29.326	29.575	0					10	6	2	0	0	0	0.47473	1	9900	9900		35.152	4.8343	1	54206			33306	2850	23171	23247	33712	33712					-0.037286503960331174
RPFERTITM	9	Unmodified	_RPFERTITM_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.8057861328125	2	575.805508	1149.59646	0.15129	8.7116E-05	0.742	0.00042725	0.8933	0.00051436	575.8058742713647	29.677	0.46502	29.677	29.549	30.014	0					14	9	2	0	0	0	0.46194	1	10900	10900		36.447	3.6343	1	600530			33307	4177	23172	23248	33713	33713					0.02764876865489896
RPGEQTGPV	9	Unmodified	_RPGEQTGPV_					0	0	0		ENST00000535977.5_1_16:677627-678308:+|nuORF	ENST00000535977.5_1_16:677627-678308:+|nuORF	ENST00000535977.5_1_16:677627-678308:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7465515136719	2	470.745973	939.477394	-0.0018317	-8.6225E-07	-1.1642	-0.00054805	-1.166	-0.00054891	470.7455418625328	23.409	0.34473	23.409	23.26	23.605	0					18	11	2	0	0	0	0.54267	1	6754	6754		27.882	1.1893	1	101730			33308	10484	23173	23249	33714	33714					0.005234262322915129
RPGFMNDLFAN	11	Unmodified	_RPGFMNDLFAN_					0	0	0			REV__ENSG00000197977|ENST00000354666|ELOVL2	REV__ENSG00000197977|ENST00000354666|ELOVL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	641.3065185546875	2	641.305872	1280.59719	0.66579	0.00042698	0.57124	0.00036634	1.237	0.00079331	641.3062174182613	27.039	0.37594	27.039	26.875	27.251	0					23	9	3	0	0	0	0.75295	1	9373	9373		22.58	0	1	741750	+		33309	17373	23174	23250	33715	33715					-0.03188328485475722
RPGFPARAE	9	Unmodified	_RPGFPARAE_					0	0	0		ENST00000587807.5_1_18:54293643-54306011:-|nuORF	ENST00000587807.5_1_18:54293643-54306011:-|nuORF	ENST00000587807.5_1_18:54293643-54306011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7713623046875	2	500.769783	999.525013	-2.1228	-0.001063	4.1155	0.0020609	1.9927	0.00099787	500.7716286484839	20.969	0.52163	20.969	20.725	21.246	0					23	12	3	0	0	0	0.35021	1	5963	5963		45.972	5.1941	1	162170			33310	10916	23175	23251	33716	33716					0.02523125223126499
RPGFPARAE	9	Unmodified	_RPGFPARAE_					0	0	0		ENST00000587807.5_1_18:54293643-54306011:-|nuORF	ENST00000587807.5_1_18:54293643-54306011:-|nuORF	ENST00000587807.5_1_18:54293643-54306011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7712707519531	2	500.769783	999.525013	2.9227	0.0014636	-0.29954	-0.00015	2.6231	0.0013136	500.7698756393561	21.093	0.5121	21.093	20.759	21.271	0					31	10	4	0	0	0	0.42902	1	6787	6787		39.253	1.4413	1	718810			33311	10916	23175	23251	33717	33717					0.02523125223126499
RPGHGQSTQE	10	Unmodified	_RPGHGQSTQE_					0	0	0		ENST00000343605.4_1_22:31031856-31032117:+|nuORF	ENST00000343605.4_1_22:31031856-31032117:+|nuORF	ENST00000343605.4_1_22:31031856-31032117:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.1756591796875	3	366.175854	1095.50573	0.27441	0.00010048	-1.0648	-0.00038991	-0.79041	-0.00028943	366.1754751806277	20.738	0.16863	20.738	20.629	20.798	0					5	3	2	0	0	0	0.47859	1	6780	6780		59.931	15.554	1	152740			33312	8748	23176	23252	33718	33718					-0.038198758584030656
RPGKAGGR	8	Unmodified	_RPGKAGGR_					0	0	0		ENST00000531172.5_2_11:17298296-17304356:+|nuORF	ENST00000531172.5_2_11:17298296-17304356:+|nuORF	ENST00000531172.5_2_11:17298296-17304356:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.73822021484375	2	399.738286	797.462019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.279	1	44.279	43.779	44.779	0								0	0	0	1.7419	1	17743	17743		4.6817	0	1				33313	10434	23177	23253	33719	33719					0.055186042257560075
RPGLPGPVGLP	11	Unmodified	_RPGLPGPVGLP_					0	0	0		ENST00000482722.5_1_1:40766856-40777859:-|nuORF;ENSG00000049089|ENST00000372748|COL9A2	ENST00000482722.5_1_1:40766856-40777859:-|nuORF	ENST00000482722.5_1_1:40766856-40777859:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3175659179688	2	530.319109	1058.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.946	1	14.946	14.446	15.446	0								0	0	0	0.40668	1	3833	3833		35.618	0.41757	1				33314	1236	23178	23254	33720	33720					0.09669728468179528
RPGPPGPSAE	10	Unmodified	_RPGPPGPSAE_					0	0	0			REV__KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.74591064453125	2	482.745973	963.477394	-0.57646	-0.00027829	0.049677	2.3981E-05	-0.52679	-0.0002543	482.74597021246984	25.032	0.26441	25.032	24.924	25.188	0					13	5	3	0	0	0	0.36476	1	8824	8824		60.118	1.8883	1	331760	+		33315	17811;20794	23179	23255	33721	33721					-0.005805737677178513
RPGRAAHRH	9	Unmodified	_RPGRAAHRH_					0	0	0			REV__ASB18|p.S59Lfs*32|1|0.27|ENSG00000182177|chr2:236264171-236264172|-/G|frameshift_variant	REV__ASB18|p.S59Lfs*32|1|0.27|ENSG00000182177|chr2:236264171-236264172|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.299560546875	2	529.297365	1056.58018	2.2803	0.0012069	0.57631	0.00030504	2.8566	0.001512	529.2976322006687	38.101	0.21374	38.101	38.03	38.244	0					13	9	2	0	0	0	0.51817	1	14463	14463		30.504	1.3336	1	49572	+		33316	12233	23180	23256	33722	33722					0.05414976534257221
RPGRPVVSI	9	Unmodified	_RPGRPVVSI_					0	0	0			REV__ENSG00000152467|ENST00000282326|ZSCAN1	REV__ENSG00000152467|ENST00000282326|ZSCAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.53814697265625	3	327.538176	979.592698	0.28851	9.4498E-05	-0.40675	-0.00013323	-0.11824	-3.8728E-05	327.5379159051793	17.425	0.091516	17.425	17.378	17.469	0					5	3	2	0	0	0	0.61124	1	4154	4154		8.6937	0	1	32718	+		33317	15510	23181	23257	33723	33723					0.10208575153933452
RPGTGVVPL	9	Unmodified	_RPGTGVVPL_					0	0	0			REV__ENST00000585839.5_1_19:14580313-14582593:+|nuORF	REV__ENST00000585839.5_1_19:14580313-14582593:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.27154541015625	2	448.271627	894.528701	-0.3013	-0.00013506	-0.22746	-0.00010197	-0.52876	-0.00023703	448.2716916168015	28.75	0.11992	28.75	28.702	28.822	0					8	4	2	0	0	0	0.5879	1	9008	9008		23.042	0	1	66858	+		33318	20477	23182	23258	33724	33724					0.07721794996984954
RPGTSSSL	8	Unmodified	_RPGTSSSL_					0	0	0		nc|ENSG00000167702|Q96AC6|KIFC2;ENSG00000167702|ENST00000645548|KIFC2;nc|ENSG00000167702|Q96AC6-2|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.7139587402344	2	402.714142	803.413731	-2.2632	-0.00091143	2.6813	0.0010798	0.41807	0.00016836	402.71503175597667	20.522	0.17534	20.522	20.383	20.558	0					6	4	2	0	0	0	0.53424	1	5754	5754		56.721	0	1	31779			33319	11632	23183	23259	33725	33725					0.00416065795184295
RPGVEQPR	8	Unmodified	_RPGVEQPR_					0	0	0			REV__ENST00000358337.9_1_5:140050841-140051006:+|nuORF	REV__ENST00000358337.9_1_5:140050841-140051006:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.76202392578125	2	469.761958	937.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.577	1	17.577	17.077	18.077	0								0	0	0	1.7419	1	4431	4431		51.335	10.763	1		+		33320	18540	23184	23260	33726	33726					0.03810838706078812
RPGVLNGA	8	Unmodified	_RPGVLNGA_					0	0	0			REV__ENST00000520114.1_1_8:38003479-38005900:-|nuORF	REV__ENST00000520114.1_1_8:38003479-38005900:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.2286071777344	2	392.22722	782.439886	-0.15316	-6.0072E-05	3.0469	0.0011951	2.8937	0.001135	392.22834298411334	30.362	0.25311	30.362	30.234	30.487	0					9	6	2	0	0	0	0.76283	1	10950	10950		25.45	6.0902	1	154370	+		33321	15349	23185	23261	33727	33727					0.03996379757313662
RPHGKSAW	8	Unmodified	_RPHGKSAW_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2356262207031	2	469.751393	937.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.66	1	11.66	11.16	12.16	0								0	0	0	1.7419	1	2442	2442		47.916	5.4411	1		+		33322	13290	23186	23262	33728	33728					0.016988733972198133
RPHTTRARC	9	Unmodified	_RPHTTRARC_					0	0	0		ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENST00000576225.5_1_17:79058928-79084738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.5292663574219	3	366.529686	1096.56723	-0.16347	-5.9916E-05	-0.76928	-0.00028196	-0.93275	-0.00034188	366.52940241248734	33.558	0.81773	33.558	33.3	34.118	0					46	17	4	0	0	0	0.45358	1	12778	12778		36.447	0	1	1547300			33323	10828	23187	23263	33729	33729					0.022807773598742642
RPIQALGTEY	10	Unmodified	_RPIQALGTEY_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion;FCGBP|p.G150Afs*25|1|0.19|ENSG00000275395|chr19:39927915-39927915|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.308837890625	2	574.308938	1146.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.13	1	33.13	32.63	33.63	0								0	0	0	0.38467	1	11594	11594		37.812	13.292	1				33324	11803	23188	23264	33730	33730					0.03588513017712103
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.287841796875	2	499.287474	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.606	1	33.606	33.106	34.106	0								0	0	0	0.33029	1	11289	11289		10.265	0	1				33325	1180	23189	23265	33731	33731					0.061977429602734446
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2716979980469	2	499.287474	996.560395	-0.66119	-0.00033012	0.71322	0.0003561	0.052038	2.5982E-05	499.28781496450716	33.769	0.49826	33.769	33.546	34.044	0					20	12	2	0	0	0	0.13726	1	12882	12882		54.776	15.97	1	328990			33326	1180	23189	23265	33732	33732					0.061977429602734446
RPLAGPGP	8	Unmodified	_RPLAGPGP_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.7242126464844	2	382.724313	763.434072	-0.1392	-5.3277E-05	0.17244	6.5996E-05	0.033233	1.2719E-05	382.72433891325295	16.557	0.1312	16.557	16.476	16.607	0					5	3	2	0	0	0	0.78146	1	3967	3967		23.037	0	1	118300			33327	4005	23190	23266	33733	33733					0.04289281245667098
RPMEHHRSK	9	Unmodified	_RPMEHHRSK_					0	0	0			REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.3037109375	2	589.303998	1176.59344	0.18111	0.00010673	-1.1655	-0.00068682	-0.98438	-0.0005801	589.303619359743	20.328	0.24539	20.328	20.142	20.387	0					11	5	4	0	0	0	0.45358	1	6304	6304		37.159	3.0726	1	435730	+		33328	14023	23191	23267	33734	33734					0.012210465313273744
RPMILIEL	8	Oxidation (M)	_RPM(Oxidation (M))ILIEL_		RPM(1)ILIEL		RPM(80)ILIEL	0	0	1		nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1	nc|ENSG00000124615|Q9NZB8-8|MOCS1	nc|ENSG00000124615|Q9NZB8-8|MOCS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7984924316406	2	500.79662	999.578688	0.6622	0.00033163	2.8819	0.0014432	3.5441	0.0017749	500.79817706630854	20.117	0.14464	20.117	20.019	20.164	0					7	3	3	0	0	0	0.32408	1	6199	6199		79.939	13.51	1	914030			33329	3389	23192	23268	33735	33735		145			0.07888161610640054
RPNDIYVNM	9	Unmodified	_RPNDIYVNM_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.2740478515625	2	561.274041	1120.53353	0.48179	0.00027041	-0.75522	-0.00042389	-0.27344	-0.00015347	561.2735779171013	34.951	0.20277	34.951	34.871	35.074	0					8	5	2	0	0	0	0.24334	1	13072	13072		56.434	10.462	1	264310			33330	6356	23193	23269	33736	33736					-0.02191688922562207
RPNQKYVDF	9	Unmodified	_RPNQKYVDF_					0	0	0			REV__nc|ENSG00000136305|Q9UHD4|CIDEB	REV__nc|ENSG00000136305|Q9UHD4|CIDEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.8031616210938	2	583.80128	1165.58801	1.178	0.00068769	2.2157	0.0012935	3.3937	0.0019812	583.8025367176614	23.57	0.31625	23.57	23.412	23.728	0					10	6	2	0	0	0	0.55048	1	8153	8153		26.693	1.1189	1	146480	+		33331	21033	23194	23270	33737	33737					0.011836462205110365
RPPARPGG	8	Unmodified	_RPPARPGG_					0	0	0			REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF	REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.2322692871094	2	404.232836	806.45112	-0.74386	-0.00030069	0.8926	0.00036082	0.14874	6.0127E-05	404.2331099687203	49.248	0.57335	49.248	49.033	49.606	0					56	33	3	0	0	0	0.7914	1	15500	15500		14.664	0	1	951030	+		33332	17862	23195	23271	33738	33738					0.040152018514731935
RPPGRMGGGL	10	Unmodified	_RPPGRMGGGL_					0	0	0			REV__ENSG00000145907|ENST00000356245|G3BP1	REV__ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2724914550781	2	499.271635	996.528718	0.16583	8.2796E-05	1.7638	0.00088062	1.9296	0.00096342	499.2726821320567	36.212	0.1272	36.212	36.133	36.26	0					7	4	2	0	0	0	0.57532	1	12956	12956		37.159	0	1	39853	+		33333	15295	23196	23272	33739	33739					0.030314717253531853
RPPIKTLNQ	9	Unmodified	_RPPIKTLNQ_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.2169494628906	3	356.217102	1065.62948	1.3904	0.00049527	-1.6032	-0.00057109	-0.21285	-7.582E-05	356.21652092764293	19.583	0.16329	19.583	19.476	19.639	0					5	3	2	0	0	0	0.54267	1	6094	6094		28.081	0	1	431700	+		33334	16668	23197	23273	33740	33740					0.09928826979830774
RPPLSSAPPR	10	Unmodified	_RPPLSSAPPR_					0	0	0			REV__ENST00000395863.7_1_20:55841273-55841597:-|nuORF	REV__ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8769836425781	3	359.876969	1076.60908	1.2472	0.00044885	-1.2051	-0.00043367	0.042165	1.5174E-05	359.87651375900106	17.674	0.21898	17.674	17.515	17.734	0					10	4	3	0	0	0	0.60281	1	5153	5153		33.922	2.2874	1	955410	+		33335	18889	23198	23274	33741	33741					0.07383656320030241
RPPPRGTP	8	Unmodified	_RPPPRGTP_					0	0	0		N4BP2L1|p.I161Mfs*11|1|0.5|ENSG00000139597|chr13:32403188-32403191|ATGA/-|frameshift_variant;nc|ENSG00000139597|Q5TBK1-2|N4BP2L1;ENSG00000139597|ENST00000380130|N4BP2L1	N4BP2L1|p.I161Mfs*11|1|0.5|ENSG00000139597|chr13:32403188-32403191|ATGA/-|frameshift_variant	N4BP2L1|p.I161Mfs*11|1|0.5|ENSG00000139597|chr13:32403188-32403191|ATGA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2557067871094	2	439.253769	876.492984	-3.071	-0.001349	0.96673	0.00042464	-2.1043	-0.00092432	439.25412339692565	23.341	0.65582	23.341	23.188	23.844	0					45	15	5	0	0	0	0.70055	1	7155	7155		33.516	0	1	1887000			33336	4337	23199	23275	33742	33742					0.049797575399907146
RPPPSRPA	8	Unmodified	_RPPPSRPA_					0	0	0			REV__ENSG00000196313|ENST00000434423|POM121	REV__ENSG00000196313|ENST00000434423|POM121	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2534484863281	2	439.253769	876.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.503	1	25.503	25.003	26.003	0								0	0	0	1.7419	1	8119	8119		21.96	1.4781	1		+		33337	17241	23200	23276	33743	33743					0.049797575399907146
RPPPTLPF	8	Unmodified	_RPPPTLPF_					0	0	0			REV__ENST00000483039.5_1_17:7461620-7463377:+|nuORF	REV__ENST00000483039.5_1_17:7461620-7463377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.768310546875	2	462.76872	923.522887	-0.77869	-0.00036035	-0.036673	-1.6971E-05	-0.81536	-0.00037732	462.7686363542556	28.931	0.31626	28.931	28.798	29.114	0					17	12	2	0	0	0	0.60719	1	9351	9351		47.916	8.8941	1	132740	+		33338	19617	23201	23277	33744	33744					0.05806696485319662
RPPREPRRRQ	10	Unmodified	_RPPREPRRRQ_					0	0	0			REV__ENST00000302787.2_1_4:1857661-1857766:-|nuORF	REV__ENST00000302787.2_1_4:1857661-1857766:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.26739501953125	3	449.93247	1346.77558	0.63057	0.00028371	0.82172	0.00036972	1.4523	0.00065343	450.2671718292472	17.147	0.29905	17.147	17.058	17.357	0					15	7	4	0	0	0	0.61238	1	4797	4797		32.751	3.1998	1	728570	+		33339	18217	23202	23278	33745	33745					0.11606522268448316
RPPRSCCCCC	10	Unmodified	_RPPRSCCCCC_					0	0	0			REV__ENST00000498308.1_1_7:5111775-5112846:+|nuORF	REV__ENST00000498308.1_1_7:5111775-5112846:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2055053710938	2	564.205409	1126.39627	0.13857	7.8185E-05	-0.43985	-0.00024817	-0.30127	-0.00016998	564.2053829846079	11.922	0.61374	11.922	11.813	12.427	0					31	16	3	0	0	0	0.74091	1	2554	2554		14.865	0.72775	1	1183700	+		33340	19795	23203	23279	33746	33746					-0.16187703661285013
RPQEVGPR	8	Unmodified	_RPQEVGPR_					0	0	0		ENST00000358337.9_1_5:140050841-140051006:+|nuORF	ENST00000358337.9_1_5:140050841-140051006:+|nuORF	ENST00000358337.9_1_5:140050841-140051006:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.761962890625	2	469.761958	937.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.528	1	17.528	17.028	18.028	0								0	0	0	1.7419	1	4196	4196		58.782	5.4305	1				33341	8831	23204	23280	33747	33747					0.038108387060901805
RPQGRGSGRNS	11	Unmodified	_RPQGRGSGRNS_					0	0	0		ENST00000289816.9_2_16:89804878-89805280:+|nuORF	ENST00000289816.9_2_16:89804878-89805280:+|nuORF	ENST00000289816.9_2_16:89804878-89805280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.304443359375	2	586.305584	1170.59661	0.086994	5.1005E-05	-1.0112	-0.00059285	-0.92417	-0.00054185	586.3049562926178	12.925	0.21712	12.925	12.711	12.928	0					9	6	2	0	0	0	0.75295	1	2817	2817		22.58	4.2552	1	486090			33342	8432	23205	23281	33748	33748					0.01814012909721896
RPQWPLSP	8	Unmodified	_RPQWPLSP_					0	0	0			REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7708740234375	2	490.769252	979.52395	-0.054762	-2.6876E-05	2.6536	0.0013023	2.5988	0.0012754	490.77055323851636	14.858	0.15613	14.858	14.797	14.953	0					12	7	3	0	0	0	0.60719	1	3120	3120		47.916	15.961	1	282060	+		33343	20271	23206	23282	33749	33749					0.03336910854238795
RPRALRSW	8	Unmodified	_RPRALRSW_					0	0	0		ENST00000464420.5_1_3:67705264-67705402:+|nuORF	ENST00000464420.5_1_3:67705264-67705402:+|nuORF	ENST00000464420.5_1_3:67705264-67705402:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3088989257812	2	521.306867	1040.59918	1.6241	0.00084667	1.5549	0.00081056	3.179	0.0016572	521.3075754524556	40.626	0.64787	40.626	40.295	40.943	0					30	12	3	0	0	0	0.61938	1	16196	16196		45.952	10.334	1	286740			33344	9769	23207	23283	33750	33750					0.0805051310530871
RPRAQTVPG	9	Unmodified	_RPRAQTVPG_					0	0	0			REV__ENST00000547963.1_1_12:114183565-114183646:-|nuORF	REV__ENST00000547963.1_1_12:114183565-114183646:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2825012207031	2	491.283057	980.551562	-0.063574	-3.1233E-05	-0.51025	-0.00025068	-0.57382	-0.00028191	491.28276417705166	14.679	0.82917	14.679	14.551	15.38	0					67	33	3	0	0	0	0.33044	1	3181	3181		47.657	0	1	639250	+		33345	20181	23208	23284	33751	33751					0.06050814114462355
RPRGPIKGA	9	Unmodified	_RPRGPIKGA_					0	0	0			REV__ENST00000595712.5_3_19:18118126-18119790:+|nuORF	REV__ENST00000595712.5_3_19:18118126-18119790:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2970886230469	2	476.295968	950.577383	2.2738	0.001083	0.13605	6.4802E-05	2.4098	0.0011478	476.29599743758774	26.026	0.26944	26.026	25.915	26.185	0					13	5	3	0	0	0	0.51817	1	9155	9155		30.504	30.504	1	1437700	+		33346	20561	23209	23285	33752	33752					0.10011708356762483
RPRNTPIF	8	Unmodified	_RPRNTPIF_					0	0	0		ENST00000469172.5_1_10:70091245-70091596:+|nuORF	ENST00000469172.5_1_10:70091245-70091596:+|nuORF	ENST00000469172.5_1_10:70091245-70091596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.1944274902344	3	334.194409	999.561398	0.53831	0.0001799	-0.42855	-0.00014322	0.10976	3.668E-05	334.19426717936153	24.575	0.61451	24.575	24.18	24.794	0					32	12	4	0	0	0	0.8006	1	8586	8586		23.042	0	1	773450			33347	9822	23210	23286	33753	33753					0.061600021198501054
RPRPPFPVE	9	Unmodified	_RPRPPFPVE_					0	0	0		ENST00000489062.2_1_9:18908354-18908543:+|nuORF	ENST00000489062.2_1_9:18908354-18908543:+|nuORF	ENST00000489062.2_1_9:18908354-18908543:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.8093872070312	2	547.808908	1093.60326	1.2329	0.00067538	-0.48473	-0.00026554	0.74814	0.00040984	547.8088753136475	27.885	0.27563	27.885	27.742	28.017	0					16	9	2	0	0	0	0.51991	1	8654	8654		23.042	0	1	95984			33348	10051	23211	23287	33754	33754					0.06020557808369631
RPRPPRAQ	8	Unmodified	_RPRPPRAQ_					0	0	0		ENST00000390006.8_1_17:80416158-80417872:+|nuORF;ENST00000579198.5_3_17:80416158-80417872:+|nuORF	ENST00000390006.8_1_17:80416158-80417872:+|nuORF	ENST00000390006.8_1_17:80416158-80417872:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2925720214844	2	489.291217	976.567881	0.77648	0.00037992	1.4719	0.00072019	2.2484	0.0011001	489.2921235333057	28.546	0.315	28.546	28.443	28.758	0					12	6	3	0	0	0	0.67394	1	10371	10371		37.159	6.6555	1	428470			33349	9137	23212	23288	33755	33755					0.07865940071224031
RPSGKGIVEF	10	Unmodified	_RPSGKGIVEF_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.30712890625	2	545.306198	1088.59784	0.93835	0.00051169	0.18892	0.00010302	1.1273	0.00061471	545.3061457349951	28.787	0.26552	28.787	28.678	28.944	0					14	5	3	0	0	0	0.5276	1	10599	10599		42.338	5.8913	1	258880			33350	4768	23213	23289	33756	33756					0.057088342259021374
RPSQQLVYT	9	Unmodified	_RPSQQLVYT_					0	0	0		ENSG00000112494|ENST00000230256|UNC93A	ENSG00000112494|ENST00000230256|UNC93A	ENSG00000112494|ENST00000230256|UNC93A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.2944946289062	2	546.29583	1090.57711	1.2056	0.00065861	-3.2541	-0.0017777	-2.0485	-0.0011191	546.2942994357873	21.096	0.11755	21.096	21.056	21.173	0					5	3	2	0	0	0	0.37197	1	5759	5759		44.117	1.7207	1	176800			33351	2744	23214	23290	33757	33757					0.03544243846226891
RPSRRVASR	9	Unmodified	_RPSRRVASR_					0	0	0		ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000495756.5_1_3:112255248-112280627:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.8278198242188	2	542.825955	1083.63736	1.8836	0.0010225	0.90413	0.00049078	2.7877	0.0015133	542.8266131825429	26.136	0.33987	26.136	26	26.34	0					24	8	4	0	0	0	0.25716	1	8988	8988		54.776	0	1	833370			33352	10112	23215	23291	33758	33758					0.09888399019973804
RPSTTLPIDK	10	Unmodified	_RPSTTLPIDK_					0	0	0		ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.32421875	2	564.324588	1126.63462	-1.0691	-0.00060332	0.1027	5.7958E-05	-0.9664	-0.00054537	564.3246430510728	12.711	0.4063	12.711	12.514	12.921	0					49	23	3	0	0	0	0.75135	1	2453	2453		12.812	6.4991	1	360390			33353	6351	23216	23292	33759	33759					0.0763708605179545
RPTDVAISF	9	Unmodified	_RPTDVAISF_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.27166748046875	2	503.271824	1004.5291	-0.063999	-3.2209E-05	0.58101	0.0002924	0.51701	0.0002602	503.27181525327677	39.368	0.59701	39.368	39.105	39.702	0					43	22	3	0	0	0	0.41113	1	14967	14967		40.778	11.629	1	538320			33354	1257	23217	23293	33760	33760					0.02701169926183411
RPTDVAISF	9	Unmodified	_RPTDVAISF_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2716979980469	2	503.271824	1004.5291	-0.49567	-0.00024946	-0.34529	-0.00017378	-0.84096	-0.00042323	503.27147784598833	39.336	0.62257	39.336	39.004	39.627	0					34	21	3	0	0	0	0.36892	1	15481	15481		44.377	8.7589	1	303150			33355	1257	23217	23293	33761	33761					0.02701169926183411
RPTEFVNHY	9	Unmodified	_RPTEFVNHY_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.7857666015625	2	581.78563	1161.55671	1.336	0.00077727	-0.52663	-0.00030639	0.80938	0.00047089	581.7853779262194	25.338	0.26669	25.338	25.242	25.509	0					15	6	3	0	0	0	0.47473	1	8656	8656		35.152	4.8343	1	345640			33356	4336	23218	23294	33762	33762					-0.017609268135629463
RPTEFVNHY	9	Unmodified	_RPTEFVNHY_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.7857055664062	2	581.78563	1161.55671	0.12648	7.3582E-05	0.36178	0.00021048	0.48826	0.00028406	581.7858255697831	25.273	0.36927	25.273	25.162	25.531	0					12	7	3	0	0	0	0.41958	1	8840	8840		40.058	6.1365	1	334060			33357	4336	23218	23294	33763	33763					-0.017609268135629463
RPTEFVNHY	9	Unmodified	_RPTEFVNHY_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.7854614257812	2	581.78563	1161.55671	1.6854	0.00098055	-1.6332	-0.00095015	0.052246	3.0396E-05	581.7846821665883	25.255	0.36989	25.255	25.144	25.514	0					18	7	4	0	0	0	0.16806	1	8834	8834		65.465	22.601	1	479860			33358	4336	23218	23294	33764	33764					-0.017609268135629463
RPTSDLGSFHG	11	Unmodified	_RPTSDLGSFHG_					0	0	0		ENST00000425712.1_1_7:156265258-156395789:-|nuORF	ENST00000425712.1_1_7:156265258-156395789:-|nuORF	ENST00000425712.1_1_7:156265258-156395789:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.287841796875	2	587.285994	1172.55744	-0.19884	-0.00011677	3.0321	0.0017807	2.8332	0.0016639	587.2878057166448	11.123	0.10086	11.123	11.058	11.158	0					5	3	2	0	0	0	0.79221	1	2214	2214		16.717	1.0756	1	229470			33359	9437	23219	23295	33765	33765					-0.021941321645272183
RPTSLAWEVK	10	Unmodified	_RPTSLAWEVK_					0	0	0		ENST00000538941.6_1_15:77085706-77134263:-|nuORF;SCAPER|p.K784Nfs*2|1|0.32|ENSG00000140386|chr15:76702901-76702901|G/-|frameshift_variant;SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant;ENST00000303521.10_1_15:76673691-77134263:-|nuORF;ENSG00000140386|ENST00000563290|SCAPER	ENST00000538941.6_1_15:77085706-77134263:-|nuORF	ENST00000538941.6_1_15:77085706-77134263:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.8331298828125	2	593.83258	1185.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.669	1	27.669	27.169	28.169	0								0	0	0	0.4201	1	10051	10051		20.837	4.1198	1				33360	4382	23220	23296	33766	33766					0.06520792288688426
RPVFAQSSDW	10	Unmodified	_RPVFAQSSDW_					0	0	0			REV__ENST00000492538.1_1_22:23412760-23437660:+|nuORF	REV__ENST00000492538.1_1_22:23412760-23437660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.7923583984375	2	596.790912	1191.56727	1.2692	0.00075745	0.45889	0.00027386	1.7281	0.0010313	596.7912309588432	37.687	0.59089	37.687	37.49	38.081	0					66	19	5	0	0	0	0.61187	1	14858	14858		32.812	32.812	1	3729800	+		33361	19729	23221	23297	33767	33767					-0.020849441591280993
RPVILIGYGT	10	Unmodified	_RPVILIGYGT_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;nc|ENSG00000141449|Q9C091-4|GREB1L;ENST00000578368.5_1_18:18963479-19048745:+|nuORF;ENST00000584446.5_1_18:18963479-19034595:+|nuORF;GREB1L|p.G1039Qfs*16|1|0.06|ENSG00000141449|chr18:21495754-21495755|GG/-|frameshift_variant;GREB1L|p.T1038Kfs*19|1|0.06|ENSG00000141449|chr18:21495751-21495752|-/AACT|frameshift_variant	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.553466796875	3	363.553603	1087.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.569	1	38.569	38.069	39.069	0								0	0	0	0.4201	1	14662	14662		20.837	0	1				33362	4446	23222	23298	33768	33768					0.09866595265384603
RPVLQQQQQ	9	Unmodified	_RPVLQQQQQ_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.8120727539062	2	562.812179	1123.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.94	1	14.94	14.44	15.44	0								0	0	0	0.24724	1	3985	3985		44.117	3.3386	1				33363	3347	23223	23299	33769	33769					0.052944509690860286
RPVSRREQ	8	Unmodified	_RPVSRREQ_					0	0	0		ENST00000561976.5_1_16:89777082-89777376:-|nuORF;VPS9D1|p.D265Gfs*127|1|0.45|ENSG00000075399|chr16:89711366-89711367|-/C|frameshift_variant	ENST00000561976.5_1_16:89777082-89777376:-|nuORF	ENST00000561976.5_1_16:89777082-89777376:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1975402832031	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.454	1	43.454	42.954	43.954	0								0	0	0	1.7419	1	17388	17388		15.642	0.77694	1				33364	10714	23224	23300	33770	33770					0.0560531500043453
RPWLRGPG	8	Unmodified	_RPWLRGPG_					0	0	0			REV__ENST00000268607.9_1_16:87425503-87425911:+|nuORF	REV__ENST00000268607.9_1_16:87425503-87425911:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7687072753906	2	469.769586	937.524619	-0.12581	-5.9103E-05	-2.088	-0.00098087	-2.2138	-0.00104	469.7687630607562	31.1	0.16037	31.1	30.997	31.157	0					7	3	3	0	0	0	0.7126	1	11711	11711		31.955	3.8734	1	121360	+		33365	18089	23225	23301	33771	33771					0.053357502939547885
RPWRATLAAE	10	Unmodified	_RPWRATLAAE_					0	0	0		nc|nan|Q8N9H9-2|C1orf127;nc|nan|Q8N9H9|C1orf127;ENSG00000175262|ENST00000377004|C1orf127	nc|nan|Q8N9H9-2|C1orf127	nc|nan|Q8N9H9-2|C1orf127	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	390.548583984375	3	390.884123	1169.63054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.604	1	23.604	23.104	24.104	0								0	0	0	0.4201	1	7232	7232		15.333	0	1				33366	6543	23226	23302	33772	33772					0.05251041348719809
RPYDGAASAY	10	Unmodified	_RPYDGAASAY_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7493896484375	2	535.748713	1069.48287	0.70453	0.00037745	-0.094611	-5.0688E-05	0.60992	0.00032677	535.7488215074305	25.532	0.27025	25.532	25.414	25.684	0					11	5	3	0	0	0	0.50881	1	8963	8963		44.377	7.2181	1	183150			33367	4828	23227	23303	33773	33773					-0.049088949759152456
RPYQLQHE	8	Unmodified	_RPYQLQHE_					0	0	0			REV__ENST00000283943.9_1_2:230629390-230629495:-|nuORF	REV__ENST00000283943.9_1_2:230629390-230629495:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7721557617188	2	535.772522	1069.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.432	1	19.432	18.932	19.932	0								0	0	0	1.7419	1	6141	6141		31.955	5.1588	1		+		33368	18138	23228	23304	33774	33774					-0.0014919598506821785
RQAELAQWQK	10	Unmodified	_RQAELAQWQK_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.8946228027344	3	419.894799	1256.66257	0.44607	0.0001873	-1.5175	-0.00063717	-1.0714	-0.00044987	419.89413468727327	24.677	0.11318	24.677	24.616	24.729	0					6	3	2	0	0	0	0.057264	1	7321	7321		106.88	54.713	1	56708			33369	6994	23229	23305	33775	33775					0.0445040903186964
RQAELAQWQK	10	Unmodified	_RQAELAQWQK_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	629.3386840820312	2	629.338561	1256.66257	-0.71984	-0.00045303	0.96532	0.00060751	0.24547	0.00015449	629.3391907630634	24.709	0.26323	24.709	24.618	24.881	0					12	9	2	0	0	0	0.35956	1	7592	7592		74.165	31.301	1	144140			33370	6994	23229	23305	33776	33776					0.0445040903186964
RQAELAQWQK	10	Unmodified	_RQAELAQWQK_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	629.3389282226562	2	629.338561	1256.66257	1.4495	0.00091223	-0.9975	-0.00062777	0.452	0.00028446	629.3379990459858	24.948	0.26423	24.948	24.842	25.106	0					16	5	4	0	0	0	0.12266	1	8808	8808		79.489	41.981	1	746610			33371	6994	23229	23305	33777	33777					0.0445040903186964
RQAELAQWQK	10	Unmodified	_RQAELAQWQK_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.89483642578125	3	419.894799	1256.66257	-0.042157	-1.7702E-05	-0.44968	-0.00018882	-0.49183	-0.00020652	419.8948273459273	24.776	0.098078	24.776	24.729	24.827	0					4	2	2	0	0	0	0.24329	1	7793	7793		74.165	28.257	1	43719			33372	6994	23229	23305	33778	33778					0.0445040903186964
RQAELAQWQK	10	Unmodified	_RQAELAQWQK_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	629.3387451171875	2	629.338561	1256.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.802	1	24.802	24.302	25.302	0								0	0	0	0.12948	1	7790	7790		70.399	36.226	1				33373	6994	23229	23305	33779	33779					0.0445040903186964
RQAELAQWQK	10	Unmodified	_RQAELAQWQK_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.8946838378906	3	419.894799	1256.66257	-0.30643	-0.00012867	-0.21282	-8.9361E-05	-0.51924	-0.00021803	419.89473942107844	24.876	0.30532	24.876	24.771	25.076	0					15	6	4	0	0	0	0.092915	1	8648	8648		96.665	35.974	1	466970			33374	6994	23229	23305	33780	33780					0.0445040903186964
RQARTASIK	9	Unmodified	_RQARTASIK_					0	0	0			REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8103637695312	2	515.809439	1029.60433	1.2137	0.00062604	1.5567	0.00080294	2.7704	0.001429	515.809891945105	39.027	0.24556	39.027	38.923	39.168	0					14	9	2	0	0	0	0.48623	1	14846	14846		19.997	0	1	74634	+		33375	17159	23230	23306	33781	33781					0.09070772177256003
RQAVCGHLL	9	Unmodified	_RQAVCGHLL_					0	0	0		ENST00000431561.7_1_16:3283645-3284759:-|nuORF	ENST00000431561.7_1_16:3283645-3284759:-|nuORF	ENST00000431561.7_1_16:3283645-3284759:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.774658203125	2	498.774011	995.533469	-0.052987	-2.6428E-05	1.3191	0.00065794	1.2661	0.00063152	498.7747753581375	15.708	0.075212	15.708	15.66	15.735	0					6	3	2	0	0	0	0.61124	1	3467	3467		11.511	0.64546	1	105330			33376	9503	23231	23307	33782	33782					0.03552355868112045
RQAVPLFSK	9	Unmodified	_RQAVPLFSK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant;nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-5|API5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3116455078125	2	523.311284	1044.60801	2.0593	0.0010777	-1.1578	-0.00060588	0.90152	0.00047177	523.310672695858	27.985	0.30676	27.985	27.845	28.152	0					11	7	2	0	0	0	0.21263	1	9832	9832		60.118	14.146	1	112290			33377	5868	23232	23308	33783	33783					0.0874944195113585
RQCKLQHH	8	Unmodified	_RQCKLQHH_					0	0	0			REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF	REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2733154296875	2	525.274709	1048.53487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.354	1	16.354	15.854	16.854	0								0	0	0	1.7419	1	3904	3904		20.482	4.84	1		+		33378	18464	23233	23309	33784	33784					0.012539899568764667
RQDWTLHF	8	Unmodified	_RQDWTLHF_					0	0	0			REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF	REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7772827148438	2	551.775065	1101.53558	0.1174	6.4776E-05	3.2313	0.0017829	3.3487	0.0018477	551.7768733839745	35.803	0.15804	35.803	35.695	35.853	0					6	4	2	0	0	0	0.70055	1	13899	13899		33.516	4.366	1	40979	+		33379	19501	23234	23310	33785	33785					-0.011128921224553778
RQEEGLRAG	9	Unmodified	_RQEEGLRAG_					0	0	0		CDH2|p.H511R|1|0.43|ENSG00000170558|chr18:27990163-27990163|T/C|missense_variant	CDH2|p.H511R|1|0.43|ENSG00000170558|chr18:27990163-27990163|T/C|missense_variant	CDH2|p.H511R|1|0.43|ENSG00000170558|chr18:27990163-27990163|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2676696777344	2	508.267604	1014.52066	0.48107	0.00024451	0.037899	1.9263E-05	0.51897	0.00026378	508.26761927110107	16.091	0.14243	16.091	16.002	16.144	0					9	4	3	0	0	0	0.28897	1	3744	3744		51.193	1.7511	1	248180			33380	450	23235	23311	33786	33786					0.013976160095694468
RQETSRSRH	9	Unmodified	_RQETSRSRH_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.8013305664062	2	578.800134	1155.58572	3.2584	0.001886	-0.90429	-0.0005234	2.3541	0.0013626	578.7996317136934	26.427	0.4185	26.427	26.218	26.637	0					23	8	4	0	0	0	0.2873	1	9344	9344		51.335	51.335	1	1954800	+		33381	21128	23236	23312	33787	33787					0.014146105354257088
RQFEGRHSK	9	Unmodified	_RQFEGRHSK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.80322265625	2	572.802146	1143.58974	1.7161	0.000983	0.51379	0.0002943	2.2299	0.0012773	572.8024615288492	12.801	0.090032	12.801	12.758	12.848	0					4	2	2	0	0	0	0.27123	1	2784	2784		53.089	19.167	1	56368			33382	6476	23237	23313	33788	33788					0.023687000291374716
RQFKNVADES	10	Unmodified	_RQFKNVADES_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.301513671875	2	597.299101	1192.58365	3.1641	0.0018899	0.50062	0.00029902	3.6647	0.0021889	597.2995156861583	12.955	0.24125	12.955	12.902	13.143	0					8	5	2	0	0	0	0.55603	1	2897	2897		39.253	0.49923	1	1171800	+		33383	19191	23238	23314	33789	33789					-0.00493862993039329
RQGATITVN	9	Unmodified	_RQGATITVN_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2675476074219	2	480.267073	958.519593	0.050394	2.4203E-05	0.098454	4.7284E-05	0.14885	7.1487E-05	480.2672535768886	22.803	0.14872	22.803	22.706	22.855	0					5	3	2	0	0	0	0.30841	1	6845	6845		49.536	7.1399	1	104110	+		33384	21050	23239	23315	33790	33790					0.03867401640661683
RQGEFVLE	8	Unmodified	_RQGEFVLE_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.255859375	2	489.256174	976.497795	-0.44373	-0.0002171	-0.37487	-0.00018341	-0.8186	-0.0004005	489.2562082062316	29.947	0.44485	29.947	29.682	30.127	0					29	11	4	0	0	0	0.65148	1	10765	10765		40.778	5.1599	1	334950	+		33385	13878	23240	23316	33791	33791					0.008605968920846863
RQGEPKLR	8	Unmodified	_RQGEPKLR_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.291015625	2	492.290882	982.567212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.047	1	19.047	18.547	19.547	0								0	0	0	1.7419	1	5094	5094		29.15	3.5755	1		+		33386	13899	23241	23317	33792	33792					0.07523100631510715
RQGQHLLLG	9	Unmodified	_RQGQHLLLG_					0	0	0		ENST00000306801.7_1_17:78899237-78923276:+|nuORF	ENST00000306801.7_1_17:78899237-78923276:+|nuORF	ENST00000306801.7_1_17:78899237-78923276:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2995910644531	2	511.298707	1020.58286	0.019332	9.8843E-06	2.2367	0.0011436	2.256	0.0011535	511.299649019084	38.848	0.30379	38.848	38.695	38.998	0					9	6	2	0	0	0	0.30268	1	15296	15296		50.025	7.6284	1	105120			33387	8522	23242	23318	33793	33793					0.07339387148579135
RQGQSSEIEV	10	Unmodified	_RQGQSSEIEV_					0	0	0			REV__ZNF337|p.C518Lfs*33|1|0.34|ENSG00000130684|chr20:25675737-25675738|-/A|frameshift_variant	REV__ZNF337|p.C518Lfs*33|1|0.34|ENSG00000130684|chr20:25675737-25675738|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.7832641601562	2	566.783284	1131.55202	1.4523	0.00082316	-0.7832	-0.0004439	0.66914	0.00037926	566.7827474078252	19.157	0.10881	19.157	19.095	19.204	0					6	3	2	0	0	0	0.33468	1	4905	4905		42.864	0	1	95456	+		33388	14591	23243	23319	33794	33794					-0.008498557470147716
RQHFLEIIT	9	Unmodified	_RQHFLEIIT_					0	0	0		ENST00000446848.6_1_7:26413249-26413366:+|nuORF	ENST00000446848.6_1_7:26413249-26413366:+|nuORF	ENST00000446848.6_1_7:26413249-26413366:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.3280639648438	2	578.827298	1155.64004	-0.05524	-3.1974E-05	-2.1754	-0.0012592	-2.2306	-0.0012911	579.3276684600231	31.49	0.10287	31.49	31.426	31.529	0					6	4	2	0	0	0	0.50858	1	10441	10441		31.53	1.2121	1	37478			33389	9623	23244	23320	33795	33795					0.06844809634276317
RQHRTPHRGLA	11	Unmodified	_RQHRTPHRGLA_					0	0	0			REV__NKX6-1|p.A6Gfs*159|1|0.5|ENSG00000163623|chr4:84498212-84498213|-/C|frameshift_variant	REV__NKX6-1|p.A6Gfs*159|1|0.5|ENSG00000163623|chr4:84498212-84498213|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	664.875244140625	2	664.873968	1327.73338	2.6131	0.0017374	-0.58917	-0.00039173	2.0239	0.0013456	664.8734118532116	16.375	0.21564	16.375	16.267	16.483	0					11	4	3	0	0	0	0.7326	1	4535	4535		24.519	0.99649	1	712260	+		33390	21291	23245	23321	33796	33796					0.08262546860078146
RQIPYTMMK	9	Unmodified	_RQIPYTMMK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	584.3038940429688	2	584.304287	1166.59402	-0.24995	-0.00014605	0.35861	0.00020954	0.10866	6.3492E-05	584.3045934709847	27.915	0.17028	27.915	27.822	27.992	0					10	6	2	0	0	0	0.28504	1	8945	8945		51.528	9.1316	1	96023			33391	1540	23246	23322	33797	33797					0.01738705136176577
RQIPYTMMK	9	Unmodified	_RQIPYTMMK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	584.3052368164062	2	584.304287	1166.59402	1.3883	0.00081117	-0.54203	-0.00031671	0.84623	0.00049446	584.3042348091419	28.132	0.3857	28.132	27.996	28.381	0					21	8	4	0	0	0	0.047855	1	10287	10287		96.034	43.097	1	618390			33392	1540	23246	23322	33798	33798					0.01738705136176577
RQIPYTMMK	9	Unmodified	_RQIPYTMMK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	584.304443359375	2	584.304287	1166.59402	0.55436	0.00032391	0.17734	0.00010362	0.7317	0.00042754	584.3042184391554	27.956	0.1391	27.956	27.864	28.003	0					5	3	2	0	0	0	0.46194	1	9227	9227		36.447	14.487	1	76017			33393	1540	23246	23322	33799	33799					0.01738705136176577
RQIPYTMMK	9	Unmodified	_RQIPYTMMK_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.304443359375	2	584.304287	1166.59402	1.5636	0.00091362	-1.2503	-0.00073055	0.31331	0.00018307	584.3038832538991	28.138	0.41652	28.138	27.894	28.311	0					23	8	4	0	0	0	0.037712	1	10132	10132		101.46	69.93	1	699210			33394	1540	23246	23322	33800	33800					0.01738705136176577
RQKAELGR	8	Unmodified	_RQKAELGR_					0	0	0		ENSG00000139437|ENST00000405876|TCHP	ENSG00000139437|ENST00000405876|TCHP	ENSG00000139437|ENST00000405876|TCHP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2828063964844	2	479.283057	956.551562	-0.23411	-0.0001122	-0.15656	-7.5039E-05	-0.39067	-0.00018724	479.2829938857209	19.207	0.10703	19.207	19.155	19.262	0					6	2	3	0	0	0	0.29286	1	5765	5765		84.916	0	1	1475900			33395	4329	23247	23323	33801	33801					0.0715481411446035
RQKRSQLD	8	Unmodified	_RQKRSQLD_					0	0	0		ENST00000453466.1_1_7:102939135-102952715:+|nuORF	ENST00000453466.1_1_7:102939135-102952715:+|nuORF	ENST00000453466.1_1_7:102939135-102952715:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7926025390625	2	515.791247	1029.56794	3.258	0.0016804	-1.0443	-0.00053866	2.2137	0.0011418	515.790671779974	28.885	0.31693	28.885	28.675	28.992	0					12	6	2	0	0	0	0.46013	1	10528	10528		64.207	2.0999	1	793590			33396	9668	23248	23324	33802	33802					0.05433895280566503
RQLTAPTTY	9	Unmodified	_RQLTAPTTY_					0	0	0			REV__ENST00000460192.5_1_1:8022845-8029412:+|nuORF	REV__ENST00000460192.5_1_1:8022845-8029412:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7821044921875	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.337	1	45.337	44.837	45.837	0								0	0	0	0.22106	1	18157	18157		47.916	10.756	1		+		33397	19363	23249	23325	33803	33803					0.027765549549030766
RQNGDDPLLTY	11	Unmodified	_RQNGDDPLLTY_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	646.3201293945312	2	646.317491	1290.62043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.164	1	41.164	40.664	41.664	0								0	0	0	0.40876	1	16356	16356		35.152	1.2304	1				33398	5385	23250	23326	33804	33804					-0.01325611167135321
RQPAALGPAGL	11	Unmodified	_RQPAALGPAGL_					0	0	0			REV__ENST00000453604.6_1_19:11513241-11517469:-|nuORF	REV__ENST00000453604.6_1_19:11513241-11517469:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8054809570312	2	525.806365	1049.59818	1.1838	0.00062245	-2.7404	-0.0014409	-1.5566	-0.00081849	525.8048726904585	13.047	0.090369	13.047	12.991	13.081	0					6	4	2	0	0	0	0.80429	1	2596	2596		14.137	1.1779	1	83860	+		33399	19334	23251	23327	33805	33805					0.07536253945750104
RQPLHLHSLHK	11	Unmodified	_RQPLHLHSLHK_					0	0	0		GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant;nc|ENSG00000130055|Q9HCC8-2|GDPD2;ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2;ENST00000472623.1_1_X:69645679-69647005:+|nuORF	GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant	GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	683.40087890625	2	683.396744	1364.77894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.299	1	40.299	39.799	40.799	0								0	0	0	0.41946	1	13498	13498		32.751	1.1163	1				33400	3619	23252	23328	33806	33806					0.11113772322460136
RQPSWDPSPV	10	Unmodified	_RQPSWDPSPV_					0	0	0		RTN4|p.L340Pfs*3|1|0.04|ENSG00000115310|chr2:55027080-55027081|-/G|frameshift_variant;RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant;RTN4|p.V670Yfs*4|4|0.29|ENSG00000115310|chr2:55026092-55026092|T/-|frameshift_variant;RTN4|p.V670Sfs*9|1|0.38|ENSG00000115310|chr2:55026091-55026092|-/T|frameshift_variant;RTN4|p.R854Sfs*2|1|0.05|ENSG00000115310|chr2:55025537-55025538|-/AA|frameshift_variant;RTN4|p.K969Efs*10|1|0.04|ENSG00000115310|chr2:55025195-55025196|-/GGGAACATTCC|frameshift_variant;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4	RTN4|p.L340Pfs*3|1|0.04|ENSG00000115310|chr2:55027080-55027081|-/G|frameshift_variant	RTN4|p.L340Pfs*3|1|0.04|ENSG00000115310|chr2:55027080-55027081|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.7911987304688	2	584.790912	1167.56727	0.045273	2.6475E-05	0.10572	6.1824E-05	0.15099	8.83E-05	584.7911502306224	35.202	0.80833	35.202	34.982	35.79	0					39	21	3	0	0	0	0.46128	1	13203	13203		49.536	10.283	1	137730			33401	2900	23253	23329	33807	33807					-0.009809441591642099
RQQALFSRAP	10	Unmodified	_RQQALFSRAP_					0	0	0			REV__nc|ENSG00000134709|Q9UJC3-2|HOOK1	REV__nc|ENSG00000134709|Q9UJC3-2|HOOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.3280639648438	2	587.327996	1172.64144	0.11899	6.9886E-05	-0.046254	-2.7166E-05	0.072735	4.2719E-05	587.3281052241356	24.981	0.2111	24.981	24.891	25.102	0					11	5	3	0	0	0	0.58189	1	8485	8485		36.447	2.2742	1	265650	+		33402	14758	23254	23330	33808	33808					0.06202443723032047
RQRDRFTV	8	Unmodified	_RQRDRFTV_					0	0	0		nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1;ENSG00000163395|ENST00000335211|IGFN1	nc|ENSG00000163395|Q86VF2-2|IGFN1	nc|ENSG00000163395|Q86VF2-2|IGFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.868408203125	3	359.868585	1076.58392	-0.094113	-3.3868E-05	-1.1146	-0.0004011	-1.2087	-0.00043497	359.8684450033789	27.293	0.38471	27.293	27.164	27.549	0					13	9	3	0	0	0	0.69548	1	8902	8902		34.173	0	1	121580			33403	5552	23255	23331	33809	33809					0.0486960151747553
RQRPIPLS	8	Unmodified	_RQRPIPLS_					0	0	0		PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant;ENSG00000104881|ENST00000360957|PPP1R13L;PPP1R13L|p.Q440Sfs*10|1|0.42|ENSG00000104881|chr19:45395472-45395472|G/-|frameshift_variant;ENST00000585905.1_1_19:45898523-45909561:-|nuORF	PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant	PPP1R13L|p.P562Afs*10|1|0.56|ENSG00000104881|chr19:45392011-45392012|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7958068847656	2	483.795801	965.577048	0.32092	0.00015526	-0.47535	-0.00022997	-0.15443	-7.4712E-05	483.7956610436781	22.992	0.42535	22.992	22.698	23.123	0					20	10	3	0	0	0	0.7976	1	7481	7481		18.324	0	1	166990			33404	2316	23256	23332	33810	33810					0.09288288636889774
RQSCVMVQK	9	Carbamidomethyl (C)	_RQSC(Carbamidomethyl (C))VMVQK_	RQSC(1)VMVQK		RQSC(71)VMVQK		0	1	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.2900390625	2	568.289168	1134.56378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.197	1	17.197	16.697	17.697	0								0	0	0	0.10319	1	4055	4055		70.816	26.439	1				33405	3564	23257	23333	33811	33811	151				0.001883464709862892
RQSCVMVQK	9	Carbamidomethyl (C)	_RQSC(Carbamidomethyl (C))VMVQK_	RQSC(1)VMVQK		RQSC(88)VMVQK		0	1	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.2896118164062	2	568.289168	1134.56378	1.7605	0.0010005	-1.6429	-0.00093366	0.11756	6.6809E-05	568.2886043113465	17.502	0.20888	17.502	17.421	17.63	0					9	5	3	0	0	0	0.07136	1	4960	4960		87.696	18.069	1	972410			33406	3564	23257	23333	33812	33812	151				0.001883464709862892
RQSCVMVQK	9	Carbamidomethyl (C)	_RQSC(Carbamidomethyl (C))VMVQK_	RQSC(1)VMVQK		RQSC(77)VMVQK		0	1	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.2896728515625	2	568.289168	1134.56378	0.11399	6.4781E-05	0.27081	0.0001539	0.3848	0.00021868	568.2895755180797	17.249	0.11657	17.249	17.168	17.284	0					8	3	3	0	0	0	0.10915	1	4284	4284		77.318	21.813	1	191580			33407	3564	23257	23333	33813	33813	151				0.001883464709862892
RQSCVMVQK	9	Carbamidomethyl (C)	_RQSC(Carbamidomethyl (C))VMVQK_	RQSC(1)VMVQK		RQSC(56)VMVQK		0	1	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.2893676757812	2	568.289168	1134.56378	0.68949	0.00039183	0.090387	5.1366E-05	0.77988	0.0004432	568.2892055980836	17.273	0.092247	17.273	17.189	17.281	0					4	2	2	0	0	0	0.24334	1	4266	4266		56.434	12.057	1	127100			33408	3564	23257	23333	33814	33814	151				0.001883464709862892
RQSCVMVQK	9	Carbamidomethyl (C)	_RQSC(Carbamidomethyl (C))VMVQK_	RQSC(1)VMVQK		RQSC(150)VMVQK		0	1	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.2894897460938	2	568.289168	1134.56378	1.6531	0.00093943	-1.8477	-0.00105	-0.1946	-0.00011059	568.2885738019575	17.421	0.1178	17.421	17.363	17.481	0					8	2	4	0	0	0	0.0076184	1	5037	5037		146.79	77.999	1	1498100			33409	3564	23257	23333	33815	33815	151				0.001883464709862892
RQSGGGSA	8	Unmodified	_RQSGGGSA_					0	0	0		ENST00000374242.8_1_9:115480363-115480486:-|nuORF	ENST00000374242.8_1_9:115480363-115480486:-|nuORF	ENST00000374242.8_1_9:115480363-115480486:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.17559814453125	2	360.175184	718.335815	1.4278	0.00051428	0.041236	1.4852E-05	1.4691	0.00052913	360.17513118470157	45.546	0.3023	45.546	45.433	45.735	0					21	16	2	0	0	0	0.73426	1	17605	17605		29.15	0	1	132040			33410	9009	23258	23334	33816	33816					-0.03461947070184124
RQSPSVNKE	9	Unmodified	_RQSPSVNKE_					0	0	0			REV__nc|ENSG00000118816|Q14094-2|CCNI	REV__nc|ENSG00000118816|Q14094-2|CCNI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.8522644042969	3	348.8526	1043.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.631	1	17.631	17.131	18.131	0								0	0	0	0.38667	1	4435	4435		16.007	6.3011	1		+		33411	20992	23259	23335	33817	33817					0.015944828067631533
RQSQLVLAK	9	Unmodified	_RQSQLVLAK_					0	0	0			REV__nc|ENSG00000204516|Q29980-2|MICB	REV__nc|ENSG00000204516|Q29980-2|MICB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.2184143066406	3	348.217102	1041.62948	3.0328	0.0010561	0.79428	0.00027658	3.827	0.0013326	348.2172859122073	25.693	0.95389	25.693	25.582	26.536	0					27	17	2	0	0	0	0.11898	1	9040	9040		75.043	8.614	1	977600	+		33412	17489	23260	23336	33818	33818					0.11032826979840138
RQSSPVTP	8	Unmodified	_RQSSPVTP_					0	0	0			REV__ENST00000460261.5_1_1:52822810-52825784:-|nuORF	REV__ENST00000460261.5_1_1:52822810-52825784:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.23577880859375	2	436.235242	870.45593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.842	1	33.842	33.342	34.342	0								0	0	0	1.7419	1	11035	11035		21.96	1.013	1		+		33413	12344	23261	23337	33819	33819					0.015520412035812114
RQSSSDSGIAT	11	Unmodified	_RQSSSDSGIAT_					0	0	0		DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant;ENSG00000175920|ENST00000340083|DOK7;nc|ENSG00000175920|Q18PE1-3|DOK7;nc|ENSG00000175920|Q18PE1-2|DOK7	DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant	DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7667846679688	2	554.765091	1107.51563	1.3103	0.0007269	2.8839	0.0015999	4.1942	0.0023268	554.7666882363472	30.397	0.13348	30.397	30.316	30.449	0					9	5	2	0	0	0	0.575	1	9671	9671		38.754	2.3069	1	81636			33414	840	23262	23338	33820	33820					-0.03382732643694908
RQSSTAKKLG	10	Unmodified	_RQSSTAKKLG_					0	0	0			REV__ENST00000494655.5_1_3:46966643-47018222:-|nuORF	REV__ENST00000494655.5_1_3:46966643-47018222:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3148193359375	2	538.314554	1074.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.212	1	12.212	11.712	12.712	0								0	0	0	0.12385	1	2693	2693		75.043	6.2565	1		+		33415	19754	23263	23339	33821	33821					0.0802333511182951
RQTAGGCRP	9	Unmodified	_RQTAGGCRP_					0	0	0		ENST00000426250.3_1_12:72665645-72666709:-|nuORF	ENST00000426250.3_1_12:72665645-72666709:-|nuORF	ENST00000426250.3_1_12:72665645-72666709:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.237060546875	2	473.237793	944.461032	-2.5026	-0.0011843	1.1791	0.00055799	-1.3235	-0.00062634	473.238220842208	29.721	0.19981	29.721	29.604	29.803	0					8	5	2	0	0	0	0.53083	1	10060	10060		29.15	0	1	116310			33416	9443	23264	23340	33822	33822					-0.01341978205448413
RQTGLLDPG	9	Unmodified	_RQTGLLDPG_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.76190185546875	2	478.761623	955.508694	0.0082824	3.9653E-06	-0.18293	-8.7581E-05	-0.17465	-8.3616E-05	478.7615604130199	28.897	0.47375	28.897	28.685	29.159	0					30	12	3	0	0	0	0.33044	1	9752	9752		47.657	1.6851	1	427040			33417	6667	23265	23341	33823	33823					0.029159992663721823
RQTGPGLPR	9	Unmodified	_RQTGPGLPR_					0	0	0		nc|nan|Q8N9H9-2|C1orf127;nc|nan|Q8N9H9|C1orf127;ENSG00000175262|ENST00000377004|C1orf127	nc|nan|Q8N9H9-2|C1orf127	nc|nan|Q8N9H9-2|C1orf127	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2826843261719	2	491.283057	980.551562	-0.063574	-3.1233E-05	-0.51025	-0.00025068	-0.57382	-0.00028191	491.28276417705166	14.679	0.82917	14.679	14.551	15.38	0					67	33	3	0	0	0	0.33044	1	3029	3029		47.657	1.7054	1	639250			33418	6543	23266	23342	33824	33824					0.06050814114473724
RQTSILIQK	9	Unmodified	_RQTSILIQK_					0	0	0		ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8351440429688	2	543.835123	1085.65569	1.8238	0.00099182	-0.64045	-0.0003483	1.1833	0.00064352	543.8345714451109	22.437	0.18555	22.437	22.357	22.542	0					7	5	2	0	0	0	0.16806	1	6336	6336		65.465	3.358	1	168440			33419	5673	23267	23343	33825	33825					0.11629096151318663
RQTSILIQK	9	Unmodified	_RQTSILIQK_					0	0	0		ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.83544921875	2	543.835123	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.793	1	22.793	22.293	23.293	0								0	0	0	0.024296	1	7455	7455		98.582	21.264	1				33420	5673	23267	23343	33826	33826					0.11629096151318663
RQTSILIQK	9	Unmodified	_RQTSILIQK_					0	0	0		ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8350830078125	2	543.835123	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.672	1	22.672	22.172	23.172	0								0	0	0	0.091378	1	7575	7575		74.165	8.6996	1				33421	5673	23267	23343	33827	33827					0.11629096151318663
RQTSILIQK	9	Unmodified	_RQTSILIQK_					0	0	0		ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8353271484375	2	543.835123	1085.65569	1.9924	0.0010835	-1.0708	-0.00058233	0.92159	0.00050119	543.8341886135845	22.68	0.21643	22.68	22.572	22.789	0					13	4	4	0	0	0	0.18416	1	7591	7591		63.534	5.3039	1	1457100			33422	5673	23267	23343	33828	33828					0.11629096151318663
RQTWLLLHMY	10	Unmodified	_RQTWLLLHMY_					0	0	0		ENSG00000146540|ENST00000397098|C7orf50	ENSG00000146540|ENST00000397098|C7orf50	ENSG00000146540|ENST00000397098|C7orf50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2453918457031	3	454.244664	1359.71216	0.87785	0.00039876	1.1869	0.00053915	2.0648	0.00093791	454.2454886892054	24.017	1.0126	24.017	23.568	24.58	0					59	20	6	0	0	0	0.61187	1	8213	8213		24.232	0	1	11287000			33423	4740	23268	23344	33829	33829					0.046694007163523565
RQVLNTRA	8	Unmodified	_RQVLNTRA_					0	0	0		ENST00000535402.1_1_12:662343-670614:+|nuORF;ENSG00000139044|ENST00000266383|B4GALNT3	ENST00000535402.1_1_12:662343-670614:+|nuORF	ENST00000535402.1_1_12:662343-670614:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2828674316406	2	479.283057	956.551562	2.2805	0.001093	-2.356	-0.0011292	-0.075591	-3.6229E-05	479.2818944489297	19.12	0.16501	19.12	19.014	19.179	0					5	3	2	0	0	0	0.37378	1	5865	5865		73.975	0	1	1503500			33424	4300	23269	23345	33830	33830					0.0715481411446035
RQVPPGACGI	10	Unmodified	_RQVPPGACGI_					0	0	0		ENST00000264657.9_1_17:40467307-40467571:-|nuORF	ENST00000264657.9_1_17:40467307-40467571:-|nuORF	ENST00000264657.9_1_17:40467307-40467571:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.266357421875	2	499.266019	996.517485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.124	1	22.124	21.624	22.624	0								0	0	0	0.40862	1	7443	7443		27.882	3.3782	1				33425	8332	23270	23346	33831	33831					0.019086496312070267
RQYLWDISIS	10	Unmodified	_RQYLWDISIS_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.56060791015625	3	427.559305	1279.65609	1.0528	0.00045014	2.7217	0.0011637	3.7745	0.0016138	427.89517327678936	46.376	0.050144	46.376	46.329	46.38	0					4	2	2	0	0	0	0.64178	1	18556	18556		20.837	0	1	49017	+		33426	13017	23271	23347	33832	33832					0.027444710805184513
RRAAHVKSL	9	Unmodified	_RRAAHVKSL_					0	0	0		ENST00000531571.5_1_11:102933090-102962381:-|nuORF	ENST00000531571.5_1_11:102933090-102962381:-|nuORF	ENST00000531571.5_1_11:102933090-102962381:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.3200073242188	2	519.319974	1036.6254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.242	1	14.242	13.742	14.742	0								0	0	0	0.35071	1	3498	3498		24.519	14.254	1				33427	10439	23272	23348	33833	33833					0.10854782276783226
RRAAVAPQ	8	Unmodified	_RRAAVAPQ_					0	0	0		ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7585754394531	2	434.759218	867.503883	-0.44131	-0.00019186	-0.094959	-4.1284E-05	-0.53627	-0.00023315	434.7591510716474	50.633	0.29924	50.633	50.532	50.831	0					25	18	2	0	0	0	0.78999	1	18206	18206		13.775	0	1	134580			33428	3469	23273	23349	33834	33834					0.06483159914273529
RRAGPALA	8	Unmodified	_RRAGPALA_					0	0	0			REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.2484436035156	2	406.248486	810.48242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.115	1	52.115	51.615	52.615	0								0	0	0	1.7419	1	15507	15507		14.664	0	1		+		33429	18132	23274	23350	33835	33835					0.06959774885535808
RRAGSRVP	8	Unmodified	_RRAGSRVP_					0	0	0			REV__ENST00000491668.1_1_3:127771425-127771617:+|nuORF	REV__ENST00000491668.1_1_3:127771425-127771617:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.7706298828125	2	449.770117	897.525681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34	1	34	33.5	34.5	0								0	0	0	1.7419	1	13064	13064		19.36	1.0356	1		+		33430	19722	23275	23351	33836	33836					0.07281964662843166
RRAPPPSA	8	Unmodified	_RRAPPPSA_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-4|AKNA	REV__nc|ENSG00000106948|Q7Z591-4|AKNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.2456359863281	2	426.245944	850.477334	-0.87523	-0.00037306	0.45493	0.00019391	-0.4203	-0.00017915	426.24610498425653	48.716	0.23881	48.716	48.613	48.852	0					31	15	3	0	0	0	0.78999	1	15295	15295		13.775	13.775	1	272080	+		33431	13841	23276	23352	33837	33837					0.0461147102294035
RRAPPPSA	8	Unmodified	_RRAPPPSA_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-4|AKNA	REV__nc|ENSG00000106948|Q7Z591-4|AKNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.245849609375	2	426.245944	850.477334	0.37127	0.00015825	-0.25615	-0.00010918	0.11513	4.9072E-05	426.2457087969054	50.619	0.47576	50.619	50.485	50.961	0					70	29	4	0	0	0	0.8006	1	18927	18927		20.482	20.482	1	909910	+		33432	13841	23276	23352	33838	33838					0.0461147102294035
RRARQQLG	8	Unmodified	_RRARQQLG_					0	0	0			REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.8660583496094	3	328.865175	983.573694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.186	1	19.186	18.686	19.686	0								0	0	0	1.7419	1	5161	5161		23.042	3.939	1		+		33433	18022	23277	23353	33839	33839					0.08125038582886646
RRATNKSY	8	Unmodified	_RRATNKSY_					0	0	0			REV__ENST00000397560.6_1_7:139790765-139790798:-|nuORF	REV__ENST00000397560.6_1_7:139790765-139790798:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2735290527344	2	498.27269	994.530826	2.9146	0.0014522	-0.85914	-0.00042808	2.0554	0.0010242	498.27216357373874	32.797	0.12048	32.797	32.737	32.858	0					4	2	2	0	0	0	0.58597	1	12409	12409		51.335	0	1	676120	+		33434	18912	23278	23354	33840	33840					0.03334223734805164
RRDIFHADW	9	Unmodified	_RRDIFHADW_					0	0	0			REV__ENSG00000260903|ENST00000562532|XKR7	REV__ENSG00000260903|ENST00000562532|XKR7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	608.3032836914062	2	608.304521	1214.59449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.378	1	33.378	32.878	33.878	0								0	0	0	0.36609	1	11707	11707		20.947	2.6225	1		+		33435	17777	23279	23355	33841	33841					-0.004224158281203927
RREHPIVV	8	Unmodified	_RREHPIVV_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.3012390136719	2	503.30125	1004.58795	-0.053302	-2.6827E-05	-0.33044	-0.00016631	-0.38374	-0.00019314	503.3008735079357	18.905	0.17561	18.905	18.856	19.031	0					8	5	2	0	0	0	0.64144	1	4793	4793		40.573	8.6178	1	225920	+		33436	14896	23280	23356	33842	33842					0.08583691011187966
RRELWFWWRGW	11	Unmodified	_RRELWFWWRGW_					0	0	0		ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.9546508789062	3	559.956505	1676.84768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.604	1	34.604	34.104	35.104	0								0	0	0	0.45674	1	12905	12905		1.3219	0.95051	1				33437	8231	23281	23357	33843	33843					0.03633436622158115
RRERCLWTK	9	Unmodified	_RRERCLWTK_					0	0	0			REV__ENST00000482556.5_1_20:47241774-47241945:-|nuORF	REV__ENST00000482556.5_1_20:47241774-47241945:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	624.3402099609375	2	624.343123	1246.67169	0.34527	0.00021557	-4.1931	-0.0026179	-3.8478	-0.0024024	624.3407742280398	25.573	0.17942	25.573	25.474	25.654	0					8	5	2	0	0	0	0.27249	1	8144	8144		52.937	3.4007	1	84763	+		33438	19613	23282	23358	33844	33844					0.05822479116568502
RRERTLLA	8	Unmodified	_RRERTLLA_					0	0	0			REV__ENST00000419296.1_1_2:110752028-110752415:+|nuORF	REV__ENST00000419296.1_1_2:110752028-110752415:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.81329345703125	2	507.811982	1013.60941	2.9526	0.0014994	-0.4977	-0.00025274	2.4549	0.0012466	507.811489571376	40.303	0.33022	40.303	40.205	40.535	0					16	7	3	0	0	0	0.49216	1	15992	15992		60.972	60.972	1	376350	+		33439	19058	23283	23359	33845	33845					0.10315076039910309
RREWGGLL	8	Unmodified	_RREWGGLL_					0	0	0		ENST00000397226.2_2_2:37423715-37423799:+|nuORF	ENST00000397226.2_2_2:37423715-37423799:+|nuORF	ENST00000397226.2_2_2:37423715-37423799:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7797546386719	2	493.780151	985.545748	-1.2697	-0.00062696	-0.44254	-0.00021852	-1.7123	-0.00084548	493.7799104642034	28.208	0.56182	28.208	27.822	28.384	0					52	20	3	0	0	0	0.63077	1	8930	8930		44.117	44.117	1	518640			33440	9216	23284	23360	33846	33846					0.05239715602817796
RRFESEDQFEE	11	Unmodified	_RRFESEDQFEE_					0	0	0			REV__ENSG00000165370|ENST00000651716|GPR101	REV__ENSG00000165370|ENST00000651716|GPR101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	736.3238525390625	2	736.326044	1470.63754	-3.7941	-0.0027937	0.76281	0.00056168	-3.0313	-0.0022321	736.3264893532835	19.163	0.19048	19.163	19.071	19.262	0					9	4	3	0	0	0	0.57554	1	5743	5743		36.447	0	1	850700	+		33441	16039	23285	23361	33847	33847					-0.07895735351985422
RRFSMEVR	8	Unmodified	_RRFSMEVR_					0	0	0		nc|ENSG00000117266|Q07002-3|CDK18	nc|ENSG00000117266|Q07002-3|CDK18	nc|ENSG00000117266|Q07002-3|CDK18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.77734375	2	540.790192	1079.56583	1.0379	0.00056128	-3.1557	-0.0017066	-2.1178	-0.0011453	540.7885224353882	20.984	0.17582	20.984	20.944	21.12	0					8	4	2	0	0	0	0.74405	1	5997	5997		27.882	7.8855	1	228840			33442	11495	23286	23362	33848	33848					0.029231432711185334
RRGGAGKRL	9	Unmodified	_RRGGAGKRL_					0	0	0			REV__ENSG00000166016|ENST00000435224|ABTB2	REV__ENSG00000166016|ENST00000435224|ABTB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.2063293457031	3	324.20542	969.59443	1.7222	0.00055836	0.95011	0.00030803	2.6724	0.00086639	324.2057002263768	12.782	0.23578	12.782	12.649	12.885	0					9	5	3	0	0	0	0.59802	1	2818	2818		16.717	16.717	1	235670	+		33443	16083	23287	23363	33849	33849					0.10841628962566574
RRGGMVVL	8	Unmodified	_RRGGMVVL_					0	0	0			REV__ENSG00000229674|ENST00000448797|H2AL3	REV__ENSG00000229674|ENST00000448797|H2AL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.265869140625	2	444.265822	886.517091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.613	1	20.613	20.113	21.113	0								0	0	0	1.7419	1	5548	5548		10.185	0	1		+		33444	17640	23288	23364	33850	33850					0.0692927470200857
RRGHKNDATE	10	Unmodified	_RRGHKNDATE_					0	0	0		LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.302490234375	2	592.299967	1182.58538	3.1775	0.001882	-0.28495	-0.00016877	2.8926	0.0017133	592.3000365621665	34.755	1.1148	34.755	34.606	35.721	0					57	22	6	0	0	0	0.43008	1	13341	13341		52.937	3.4952	1	4349000			33445	6112	23289	23365	33851	33851					0.0013919081554831791
RRGPGQRQG	9	Unmodified	_RRGPGQRQG_					0	0	0			REV__ENST00000436101.1_1_20:61146672-61147090:-|nuORF	REV__ENST00000436101.1_1_20:61146672-61147090:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2828369140625	2	506.28138	1010.54821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.379	1	12.379	11.879	12.879	0								0	0	0	0.37821	1	2592	2592		17.365	2.5001	1		+		33446	19207	23290	23366	33852	33852					0.04335564060465913
RRGVWLVA	8	Unmodified	_RRGVWLVA_					0	0	0		MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant;MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant;MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant	MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7920837402344	2	478.793061	955.571569	-2.9282	-0.001402	1.1219	0.00053714	-1.8063	-0.00086485	478.79356027566746	17.732	0.37791	17.732	17.624	18.002	0					16	8	3	0	0	0	0.61433	1	4491	4491		46.766	46.766	1	324350			33447	4649	23291	23367	33853	33853					0.09200609845083818
RRHDVKVVI	9	Unmodified	_RRHDVKVVI_					0	0	0			REV__nc|ENSG00000130921|Q9H3J6-2|MTRFR	REV__nc|ENSG00000130921|Q9H3J6-2|MTRFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.35009765625	2	561.348732	1120.68291	3.4701	0.0019479	-0.51186	-0.00028733	2.9582	0.0016606	561.348476367721	23.26	0.81388	23.26	23.15	23.964	0					38	16	4	0	0	0	0.15163	1	7850	7850		60.972	0	1	7621700	+		33448	20121	23292	23368	33854	33854					0.12739624482355794
RRHEEIQQ	8	Unmodified	_RRHEEIQQ_					0	0	0			REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2877197265625	2	548.286328	1094.5581	3.8149	0.0020916	-0.97795	-0.00053619	2.8369	0.0015554	548.2859336044596	33.715	0.76915	33.715	33.365	34.134	0					41	16	5	0	0	0	0.35045	1	12836	12836		76.774	2.5191	1	10142000	+		33449	14056	23293	23369	33855	33855					0.01460707275191453
RRHNRKNQL	9	Unmodified	_RRHNRKNQL_					0	0	0			REV__GRM3|p.K437Vfs*13|1|0.07|ENSG00000198822|chr7:86787099-86787100|-/CGTA|frameshift_variant	REV__GRM3|p.K437Vfs*13|1|0.07|ENSG00000198822|chr7:86787099-86787100|-/CGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	611.355712890625	2	611.355411	1220.69627	0.92481	0.00056539	0.67594	0.00041324	1.6007	0.00097863	611.3556129587457	53.575	0.94929	53.575	53.211	54.16	0					125	59	3	0	0	0	0.57706	1	17078	17078		24.203	24.203	1	222030	+		33450	17436	23294	23370	33856	33856					0.09474875314299425
RRHSQVNW	8	Unmodified	_RRHSQVNW_					0	0	0		ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7854614257812	2	541.783756	1081.55296	3.5537	0.0019253	-0.45813	-0.00024821	3.0955	0.0016771	541.7832486717099	38.865	1.3875	38.865	38.661	40.048	0					57	30	4	0	0	0	0.57802	1	15478	15478		52.299	1.1065	1	13128000			33451	8914	23295	23371	33857	33857					0.015444482032080487
RRKINSTY	8	Unmodified	_RRKINSTY_					0	0	0		nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2974853515625	2	519.296165	1036.57778	1.6222	0.00084239	1.1667	0.00060587	2.7889	0.0014483	519.2967081840108	40.935	0.28107	40.935	40.804	41.085	0					13	7	2	0	0	0	0.5676	1	16095	16095		53.351	53.351	1	532340			33452	11475	23296	23372	33858	33858					0.060950832859589354
RRKLREEF	8	Unmodified	_RRKLREEF_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.3316040039062	2	567.330539	1132.64652	1.9372	0.001099	-0.94717	-0.00053736	0.98999	0.00056165	567.329970454615	50.99	0.36106	50.99	50.831	51.192	0					32	22	2	0	0	0	0.79882	1	19020	19020		19.36	0	1	76025			33453	1381	23297	23373	33859	33859					0.0855074758567298
RRKNATLR	8	Unmodified	_RRKNATLR_					0	0	0			REV__ENST00000436100.1_1_10:101874528-101874642:-|nuORF	REV__ENST00000436100.1_1_10:101874528-101874642:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.8815612792969	3	338.880825	1013.62064	1.5801	0.00053547	0.62378	0.00021139	2.2039	0.00074686	338.8810579232837	17.03	0.21799	17.03	16.923	17.141	0					8	4	3	0	0	0	0.57171	1	4847	4847		52.937	52.937	1	1317800	+		33454	19206	23298	23374	33860	33860					0.1143789813403373
RRKPQPHSG	9	Unmodified	_RRKPQPHSG_					0	0	0		ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8007202148438	2	531.799406	1061.58426	0.72249	0.00038422	1.3337	0.00070927	2.0562	0.0010935	531.8000673341127	34.598	0.16159	34.598	34.489	34.651	0					5	3	2	0	0	0	0.53083	1	13287	13287		29.15	2.4566	1	61028			33455	6239	23299	23375	33861	33861					0.05593021237314133
RRKRAEAG	8	Unmodified	_RRKRAEAG_					0	0	0			REV__ENST00000532926.5_1_11:7598707-7598800:+|nuORF	REV__ENST00000532926.5_1_11:7598707-7598800:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2826232910156	2	472.280849	942.547145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.648	1	14.648	14.148	15.148	0								0	0	0	1.7419	1	3049	3049		60.972	8.0352	1		+		33456	20076	23300	23376	33862	33862					0.07357349691562831
RRKTKAKV	8	Unmodified	_RRKTKAKV_					0	0	0			REV__ENST00000498819.1_1_9:91963122-91972225:+|nuORF	REV__ENST00000498819.1_1_9:91963122-91972225:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.5584411621094	3	329.55757	985.650882	1.5073	0.00049676	1.1707	0.00038581	2.678	0.00088256	329.5579469301049	27.904	0.34333	27.904	27.798	28.141	0					17	7	4	0	0	0	0.7887	1	10177	10177		10.265	0	1	1393400	+		33457	17134	23301	23377	33863	33863					0.15748256799213323
RRKYNPTR	8	Unmodified	_RRKYNPTR_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3186645507812	2	545.815056	1089.61556	0.33195	0.00018118	-3.5596	-0.0019429	-3.2277	-0.0017617	546.3148580928641	41.977	0.29943	41.977	41.775	42.074	0					16	13	2	0	0	0	0.68432	1	16460	16460		35.618	2.8059	1	73745			33458	5959	23302	23378	33864	33864					0.07433594271401489
RRLCERTRK	9	Unmodified	_RRLCERTRK_					0	0	0		ENST00000380636.1_1_X:12993858-12993984:+|nuORF	ENST00000380636.1_1_X:12993858-12993984:+|nuORF	ENST00000380636.1_1_X:12993858-12993984:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.5725402832031	3	406.571774	1216.69349	1.6898	0.00068704	0.24512	9.9659E-05	1.935	0.0007867	406.5718898508047	19.276	0.09634	19.276	19.231	19.327	0					6	2	3	0	0	0	0.51817	1	4966	4966		23.523	0	1	405880			33459	9098	23303	23379	33865	33865					0.09381283865127443
RRLFVLTQ	8	Unmodified	_RRLFVLTQ_					0	0	0			REV__ENST00000296498.3_1_4:119259441-119273552:-|nuORF	REV__ENST00000296498.3_1_4:119259441-119273552:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.818603515625	2	516.819276	1031.624	-1.484	-0.00076694	0.34154	0.00017651	-1.1424	-0.00059043	516.8194180277576	33.567	0.29377	33.567	33.479	33.773	0					16	8	3	0	0	0	0.46905	1	11798	11798		63.306	17.354	1	786090	+		33460	18180	23304	23380	33866	33866					0.10945148188034182
RRLGQWPP	8	Unmodified	_RRLGQWPP_					0	0	0			REV__ENST00000606893.5_1_6:110501354-110532119:+|nuORF	REV__ENST00000606893.5_1_6:110501354-110532119:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2868347167969	2	505.288143	1008.56173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15	1	15	14.5	15.5	0								0	0	0	1.7419	1	3184	3184		21.702	0.016585	1		+		33461	20620	23305	23381	33867	33867					0.05779421839702081
RRLICGVA	8	Unmodified	_RRLICGVA_					0	0	0			REV__ENST00000203664.9_1_14:94492725-94492884:+|nuORF	REV__ENST00000203664.9_1_14:94492725-94492884:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2670593261719	2	444.265822	886.517091	-1.1578	-0.00051435	3.971	0.0017642	2.8133	0.0012498	444.26749207122356	20.631	0.14358	20.631	20.555	20.699	0					7	4	2	0	0	0	0.79176	1	5806	5806		21.702	3.3779	1	89621	+		33462	17871	23306	23382	33868	33868					0.0692927470200857
RRLLQQHG	8	Unmodified	_RRLLQQHG_					0	0	0			REV__ENST00000375078.3_1_1:20810205-20811795:-|nuORF	REV__ENST00000375078.3_1_1:20810205-20811795:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53399658203125	3	336.533425	1006.57845	1.4876	0.00050061	1.1847	0.00039868	2.6722	0.00089929	336.53380111430243	47.206	0.42302	47.206	47.093	47.516	0					44	25	2	0	0	0	0.8006	1	18057	18057		16.473	0	1	62791	+		33463	18702	23307	23383	33869	33869					0.07541922725658878
RRLLYALC	8	Unmodified	_RRLLYALC_					0	0	0		ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53436279296875	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.944	1	20.944	20.444	21.444	0								0	0	0	1.7419	1	6737	6737		24.203	0	1				33464	7084	23308	23384	33870	33870					0.0715811690757846
RRLLYALC	8	Unmodified	_RRLLYALC_					0	0	0		ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.18	1	24.18	23.68	24.68	0								0	0	0	1.7419	1	8304	8304		30.504	0	1				33465	7084	23308	23384	33871	33871					0.0715811690757846
RRLLYALC	8	Unmodified	_RRLLYALC_					0	0	0		ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53436279296875	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.964	1	27.964	27.464	28.464	0								0	0	0	1.7419	1	10075	10075		16.473	0	1				33466	7084	23308	23384	33872	33872					0.0715811690757846
RRLLYALC	8	Unmodified	_RRLLYALC_					0	0	0		ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.518	1	54.518	54.018	55.018	0								0	0	0	1.7419	1	20799	20799		18.324	1.8513	1				33467	7084	23308	23384	33873	33873					0.0715811690757846
RRLPTSTPFP	10	Unmodified	_RRLPTSTPFP_					0	0	0			REV__CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant	REV__CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.22479248046875	3	391.224257	1170.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.096	1	46.096	45.596	46.596	0								0	0	0	0.40797	1	18452	18452		28.081	5.5018	1		+		33468	12450	23309	23385	33874	33874					0.07244212008527029
RRLRQHTQ	8	Unmodified	_RRLRQHTQ_					0	0	0			REV__ERRFI1|p.R244Q|3|0.32|ENSG00000116285|chr1:8013868-8013868|C/T|missense_variant	REV__ERRFI1|p.R244Q|3|0.32|ENSG00000116285|chr1:8013868-8013868|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	365.54888916015625	3	365.547846	1093.62171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.835	1	14.835	14.335	15.335	0								0	0	0	1.7419	1	3935	3935		19.104	0.84144	1		+		33469	20646	23310	23386	33875	33875					0.07864112502943499
RRLTRNGAK	9	Unmodified	_RRLTRNGAK_					0	0	0			REV__ENST00000319023.6_1_11:71175173-71184379:+|nuORF	REV__ENST00000319023.6_1_11:71175173-71184379:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.330078125	2	536.328331	1070.64211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.072	1	13.072	12.572	13.572	0								0	0	0	0.24544	1	2892	2892		44.377	6.5657	1		+		33470	18319	23311	23387	33876	33876					0.10961283162737345
RRLVQGRLGA	10	Unmodified	_RRLVQGRLGA_					0	0	0			REV__ENST00000372677.7_1_X:102564842-102565956:-|nuORF	REV__ENST00000372677.7_1_X:102564842-102565956:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.3534545898438	2	563.351806	1124.68906	3.4702	0.001955	-0.27571	-0.00015532	3.1945	0.0017996	563.3514782265714	44.151	0.21782	44.151	44.044	44.262	0					23	9	3	0	0	0	0.54197	1	17675	17675		40.778	2.9666	1	360260	+		33471	18672	23312	23388	33877	33877					0.13170142713875066
RRNRRRPNVM	10	Unmodified	_RRNRRRPNVM_					0	0	0			REV__ENST00000256190.12_1_11:9801914-9801968:-|nuORF	REV__ENST00000256190.12_1_11:9801914-9801968:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	677.8882446289062	2	677.889095	1353.76364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.578	1	36.578	36.078	37.078	0								0	0	0	0.38093	1	13806	13806		47.657	19.775	1		+		33472	17980	23313	23389	33878	33878					0.10090582253610592
RRPAHSGPAD	10	Unmodified	_RRPAHSGPAD_					0	0	0		ENST00000458001.2_1_13:114537591-114537669:+|nuORF	ENST00000458001.2_1_13:114537591-114537669:+|nuORF	ENST00000458001.2_1_13:114537591-114537669:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2737426757812	2	532.273221	1062.53189	-0.29399	-0.00015648	1.0155	0.0005405	0.72148	0.00038402	532.2737934643719	15.649	0.14357	15.649	15.581	15.725	0					14	6	3	0	0	0	0.16018	1	3606	3606		84.916	84.916	1	269560			33473	9706	23314	23390	33879	33879					0.003124381036968771
RRPAPASP	8	Unmodified	_RRPAPASP_					0	0	0			REV__RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant;REV__HCN4|p.A21Pfs*211|2|0.22|ENSG00000138622|chr15:73368210-73368210|C/-|frameshift_variant	REV__RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.24566650390625	2	426.245944	850.477334	-0.71108	-0.0003031	0.61851	0.00026364	-0.092569	-3.9457E-05	426.24603939082874	48.974	0.31287	48.974	48.858	49.171	0					44	19	3	0	0	0	0.76283	1	17732	17732		25.45	0	1	235500			33474	17277;20716	23315	23391	33880	33880					0.0461147102294035
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.23272705078125	2	404.232836	806.45112	-0.47661	-0.00019266	0.21751	8.7924E-05	-0.2591	-0.00010474	404.23284267833185	49.557	0.60666	49.557	49.291	49.898	0					62	27	4	0	0	0	0.7914	2	17847	17847;17981		15.636	15.636	1	2330600	+		33475	17811	23316	23392	33881;33882	33881					0.040152018514731935
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.23248291015625	2	404.232836	806.45112	-0.82242	-0.00033245	0.76009	0.00030725	-0.062334	-2.5197E-05	404.23300367515463	47.539	0.33314	47.539	47.453	47.786	0					40	21	3	0	0	0	0.79176	1	15056	15056		21.702	21.702	1	317610	+		33476	17811	23316	23392	33883	33883					0.040152018514731935
RRPDPVSL	8	Unmodified	_RRPDPVSL_					0	0	0			REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.27197265625	2	470.272158	938.529764	-0.90406	-0.00042515	0.39707	0.00018673	-0.50699	-0.00023842	470.27230827171377	51.033	0.19812	51.033	50.973	51.171	0					20	12	2	0	0	0	0.77246	1	19032	19032		24.203	1.1603	1	90876	+		33477	18161	23317	23393	33884	33884					0.05804009365908769
RRPFGSLLQ	9	Unmodified	_RRPFGSLLQ_					0	0	0			REV__ENSG00000162191|ENST00000301935|UBXN1	REV__ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.3141479492188	2	537.314358	1072.61416	-0.35901	-0.0001929	-0.32377	-0.00017397	-0.68278	-0.00036687	537.3142394958644	33.839	0.28626	33.839	33.75	34.036	0					34	11	4	0	0	0	0.30951	1	11372	11372		49.442	1.5259	1	2415400	+		33478	15804	23318	23394	33885	33885					0.08075960182668496
RRPGLVSA	8	Unmodified	_RRPGLVSA_					0	0	0		ENSG00000188095|ENST00000341735|MESP2	ENSG00000188095|ENST00000341735|MESP2	ENSG00000188095|ENST00000341735|MESP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.2615966796875	2	428.261594	854.508634	-0.4796	-0.0002054	0.25916	0.00011099	-0.22044	-9.4406E-05	428.26159392812497	51.681	0.44611	51.681	51.55	51.996	0					73	27	4	0	0	0	0.78999	1	15477	15477		13.775	0	1	1570000			33479	7234	23319	23395	33886	33886					0.0755604405703707
RRPHQSCSY	9	Unmodified	_RRPHQSCSY_					0	0	0			REV__ENST00000262207.8_1_8:75896934-75898275:+|nuORF	REV__ENST00000262207.8_1_8:75896934-75898275:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.268798828125	2	567.267081	1132.51961	3.4711	0.001969	-1.6833	-0.00095489	1.7878	0.0010141	567.2667004024015	33.623	0.52264	33.623	33.466	33.989	0					25	11	5	0	0	0	0.16524	1	12791	12791		65.803	15.779	1	1281100	+		33480	18027	23320	23396	33887	33887					-0.04134921630975441
RRPPTGPA	8	Unmodified	_RRPPTGPA_					0	0	0			REV__ENSG00000171794|ENST00000304477|UTF1	REV__ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.2456359863281	2	426.245944	850.477334	-0.71885	-0.00030641	0.4837	0.00020618	-0.23515	-0.00010023	426.24605119613705	50.665	0.39647	50.665	50.484	50.88	0					56	24	3	0	0	0	0.7914	1	18192	18192		14.664	14.664	1	663500	+		33481	16431	23321	23397	33888	33888					0.046114710229517186
RRQISCDRG	9	Unmodified	_RRQISCDRG_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7820434570312	2	545.780356	1089.54616	3.7588	0.0020515	-0.73531	-0.00040132	3.0235	0.0016502	545.7801667239918	46.084	1.4738	46.084	45.341	46.815	0					143	64	4	0	0	0	0.37197	1	18492	18492		44.117	1.7207	1	738900	+		33482	13250	23322	23398	33889	33889					0.004967672603243045
RRQLLVTPGN	10	Unmodified	_RRQLLVTPGN_					0	0	0			REV__ENST00000377625.6_1_13:75900405-75901937:-|nuORF	REV__ENST00000377625.6_1_13:75900405-75901937:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.2317810058594	3	385.231523	1152.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.126	1	19.126	18.626	19.626	0								0	0	0	0.4201	1	5715	5715		10.587	0.32154	1		+		33483	18734	23323	23399	33890	33890					0.10251016757138132
RRQWLFRH	8	Unmodified	_RRQWLFRH_					0	0	0			REV__sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2	REV__sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	599.8367919921875	2	599.838865	1197.66318	0.14002	8.3991E-05	-2.3484	-0.0014086	-2.2084	-0.0013247	599.837355528401	35.627	0.39894	35.627	35.381	35.78	0					24	20	2	0	0	0	0.75243	1	11640	11640		26.796	0.10319	1	60647	+		33484	21582	23324	23400	33891	33891					0.07225293262263222
RRRDAGWGP	9	Unmodified	_RRRDAGWGP_					0	0	0		ENST00000393841.5_1_6:44191398-44193833:+|nuORF	ENST00000393841.5_1_6:44191398-44193833:+|nuORF	ENST00000393841.5_1_6:44191398-44193833:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.52569580078125	3	357.524929	1069.55296	1.3373	0.00047811	0.96849	0.00034626	2.3058	0.00082437	357.52521804047217	22.13	0.61839	22.13	21.97	22.589	0					22	12	2	0	0	0	0.57706	1	7328	7328		18.262	18.262	1	1135700			33485	9166	23325	23401	33892	33892					0.020964482032240994
RRRERKQPA	9	Unmodified	_RRRERKQPA_					0	0	0		ENST00000361875.7_1_3:150126772-150126880:+|nuORF	ENST00000361875.7_1_3:150126772-150126880:+|nuORF	ENST00000361875.7_1_3:150126772-150126880:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	399.9090881347656	3	399.574283	1195.70102	-1.3157	-0.00052574	3.3251	0.0013286	2.0094	0.0008029	399.9098950882903	28.049	0.14637	28.049	27.96	28.106	0					7	5	2	0	0	0	0.46194	1	9013	9013		36.447	9.3994	1	68052			33486	8883	23326	23402	33893	33893					0.11099759457079017
RRRGAVVAK	9	Unmodified	_RRRGAVVAK_					0	0	0		ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.22186279296875	3	338.22107	1011.64138	1.5867	0.00053664	0.84551	0.00028597	2.4322	0.00082261	338.22132032345905	15.036	0.31886	15.036	14.794	15.113	0					14	6	3	0	0	0	0.41113	1	3897	3897		40.778	10.275	1	589950			33487	3811	23327	23403	33894	33894					0.13602488513697608
RRRGGYGHLAG	11	Unmodified	_RRRGGYGHLAG_					0	0	0		chr1:155172892-155173248|99|11.8|0.0|20.17|-|1|KRTCAP2,None|1	chr1:155172892-155173248|99|11.8|0.0|20.17|-|1|KRTCAP2,None|1	chr1:155172892-155173248|99|11.8|0.0|20.17|-|1|KRTCAP2,None|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.3304443359375	2	600.328862	1198.64317	2.0979	0.0012594	0.41271	0.00024776	2.5106	0.0015072	600.3291072478013	32.964	0.59162	32.964	32.858	33.449	0					20	12	2	0	0	0	0.52516	1	12469	12469		42.396	42.396	1	2429700			33488	514	23328	23404	33895	33895					0.051794975316624914
RRRGRSLLA	9	Unmodified	_RRRGRSLLA_					0	0	0			REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant	REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.8457641601562	2	542.844148	1083.67374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.229	1	16.229	15.729	16.729	0								0	0	0	0.35071	1	4596	4596		24.519	5.1592	1		+		33489	16393	23329	23405	33896	33896					0.13525275916731516
RRRGVGSV	8	Unmodified	_RRRGVGSV_					0	0	0			REV__ENST00000430328.6_1_2:152266682-152266823:+|nuORF	REV__ENST00000430328.6_1_2:152266682-152266823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.7711486816406	2	443.770117	885.525681	-0.29183	-0.00012951	3.0719	0.0013632	2.7801	0.0012337	443.77115587733385	41.435	0.15297	41.435	41.356	41.509	0					11	9	2	0	0	0	0.67394	1	13283	13283		37.159	1.5408	1	34114	+		33490	18407	23330	23406	33897	33897					0.07833964662859216
RRRLELQLQ	9	Unmodified	_RRRLELQLQ_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.5832214355469	3	404.582556	1210.72584	1.0332	0.00041802	0.88589	0.00035842	1.9191	0.00077643	404.5828762737395	19.667	0.51108	19.667	19.264	19.775	0					25	10	3	0	0	0	0.19952	1	6270	6270		61.691	0	1	751770			33491	2348	23331	23407	33898	33898					0.12890394539795125
RRRPADPEG	9	Unmodified	_RRRPADPEG_					0	0	0			REV__ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant	REV__ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2828979492188	2	527.281046	1052.54754	0.51541	0.00027177	2.061	0.0010867	2.5764	0.0013585	527.2821470403359	24.59	0.1917	24.59	24.515	24.706	0					10	6	2	0	0	0	0.54267	1	7535	7535		27.882	2.3082	1	141490	+		33492	22302	23332	23408	33899	33899					0.023367246207499193
RRRPLLPP	8	Unmodified	_RRRPLLPP_					0	0	0		ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.8285827636719	2	502.827435	1003.64032	2.9276	0.0014721	-0.3581	-0.00018006	2.5695	0.001292	502.8271943433308	38.19	1.7309	38.19	36.846	38.577	0					80	36	3	0	0	0	0.67475	1	15098	15098		37.028	0	1	804710			33493	5999	23333	23409	33900	33900					0.13864274144805222
RRRQGHKA	8	Unmodified	_RRRQGHKA_					0	0	0			REV__ENST00000590563.1_1_17:42117584-42117671:-|nuORF	REV__ENST00000590563.1_1_17:42117584-42117671:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.534912109375	3	336.868919	1007.58493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.545	1	43.545	43.045	44.045	0								0	0	0	1.7419	1	17021	17021		12.207	5.0135	1		+		33494	20519	23334	23410	33901	33901					0.08143860677034809
RRRRSPAK	8	Unmodified	_RRRRSPAK_					0	0	0			REV__ENSG00000141664|ENST00000269499|ZCCHC2	REV__ENSG00000141664|ENST00000269499|ZCCHC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.8087158203125	2	513.823215	1025.63188	3.1933	0.0016408	-0.067701	-3.4786E-05	3.1256	0.001606	513.82322062839	14.861	0.42019	14.861	14.575	14.995	0					25	8	4	0	0	0	0.78978	1	3675	3675		12.959	6.2236	1	1048000	+		33495	15128	23335	23411	33902	33902					0.12008720228163838
RRRRWMGCWTR	11	Unmodified	_RRRRWMGCWTR_					0	0	0			REV__ENSG00000110665|ENST00000381153|C11orf21	REV__ENSG00000110665|ENST00000381153|C11orf21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.9439086914062	3	521.938462	1562.79356	5.1254	0.0026752	4.2649	0.002226	9.3903	0.0049012	521.9408941479622	27.209	0.14817	27.209	27.139	27.287	0					8	5	2	0	0	0	0.79011	1	8642	8642		17.167	3.0807	1	67537	+		33496	13942	23336	23412	33903	33903					0.0346719792728436
RRRSGLQPL	9	Unmodified	_RRRSGLQPL_					0	0	0			REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF	REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.8328247070312	2	541.830706	1081.64686	3.558	0.0019278	-0.029945	-1.6225E-05	3.528	0.0019116	541.8307004473638	37.733	0.39258	37.733	37.582	37.974	0					23	8	4	0	0	0	0.2546	1	14762	14762		65.465	26.213	1	1180500	+		33497	18019	23337	23413	33904	33904					0.1093016730551426
RRRSVAVY	8	Unmodified	_RRRSVAVY_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5340270996094	3	336.201675	1005.5832	0.53512	0.00017991	-0.95857	-0.00032227	-0.42345	-0.00014236	336.2023385033146	27.289	1.4297	27.289	26.845	28.275	0					49	29	3	0	0	0	0.79176	1	9721	9721		24.203	2.2429	1	703170			33498	2769	23338	23414	33905	33905					0.08062806868417738
RRRVLEGPGW	10	Unmodified	_RRRVLEGPGW_					0	0	0		RASAL3|p.P120Lfs*89|1|0.48|ENSG00000105122|chr19:15461577-15461577|G/-|frameshift_variant	RASAL3|p.P120Lfs*89|1|0.48|ENSG00000105122|chr19:15461577-15461577|G/-|frameshift_variant	RASAL3|p.P120Lfs*89|1|0.48|ENSG00000105122|chr19:15461577-15461577|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	613.3485717773438	2	613.349263	1224.68397	-0.91034	-0.00055835	-0.31446	-0.00019287	-1.2248	-0.00075123	613.3490683482643	30.164	0.24742	30.164	30.076	30.324	0					17	6	3	0	0	0	0.4287	1	10855	10855		58.782	58.782	1	810630			33499	12001	23339	23415	33906	33906					0.08061838851267566
RRRWTFRKWWG	11	Unmodified	_RRRWTFRKWWG_					0	0	0		ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	817.9530639648438	2	817.95001	1633.88547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.449	1	10.449	9.9489	10.949	0								0	0	0	0.45674	1	1995	1995		0.75571	0.75571	1				33500	8569	23340	23416	33907	33907					0.09387947607615388
RRRYSTRRA	9	Unmodified	_RRRYSTRRA_					0	0	0			REV__nc|nan|Q6P1X6-2|C8orf82	REV__nc|nan|Q6P1X6-2|C8orf82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	611.3563842773438	2	611.355411	1220.69627	0.9804	0.00059937	0.49791	0.0003044	1.4783	0.00090377	611.3554999885257	53.463	0.95182	53.463	53.218	54.17	0					121	58	3	0	0	0	0.55379	1	15739	15739		26.693	4.733	1	216440	+		33501	18286	23341	23417	33908	33908					0.09474875314322162
RRSGSATPPS	10	Unmodified	_RRSGSATPPS_					0	0	0			REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2674560546875	2	508.267604	1014.52066	0.18638	9.4732E-05	-0.32548	-0.00016543	-0.1391	-7.0699E-05	508.2674096777987	16.289	0.31812	16.289	16.179	16.497	0					12	6	4	0	0	0	0.3337	1	4634	4634		63.534	10.597	1	3299300	+		33502	18298	23342	23418	33909	33909					0.01397616009558078
RRSKWDQPA	9	Unmodified	_RRSKWDQPA_					0	0	0		nc|ENSG00000132680|Q7Z7F0-4|KHDC4;ENST00000466713.1_1_1:155896424-155904164:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENSG00000132680|ENST00000368321|KHDC4;ENST00000491599.1_2_1:155902488-155904164:-|nuORF	nc|ENSG00000132680|Q7Z7F0-4|KHDC4	nc|ENSG00000132680|Q7Z7F0-4|KHDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.3048706054688	2	572.304521	1142.59449	0.080954	4.633E-05	0.07655	4.381E-05	0.1575	9.014E-05	572.304415982116	33.111	0.23188	33.111	32.936	33.168	0					20	10	2	0	0	0	0.55379	1	11041	11041		26.693	3.1702	1	73095			33503	3807	23343	23419	33910	33910					0.028895841719076998
RRSMQVSL	8	Unmodified	_RRSMQVSL_					0	0	0			REV__ENSG00000010282|ENST00000441594|HHATL	REV__ENSG00000010282|ENST00000441594|HHATL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.77239990234375	2	488.771468	975.528384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.058	1	37.058	36.558	37.558	0								0	0	0	1.7419	1	14021	14021		30.504	3.7075	1		+		33504	12893	23344	23420	33911	33911					0.03964052005494523
RRSPQIIPPSA	11	Unmodified	_RRSPQIIPPSA_					0	0	0			REV__ENSG00000242732|ENST00000609883|RTL5	REV__ENSG00000242732|ENST00000609883|RTL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.3572998046875	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.833	1	53.833	53.333	54.333	0								0	0	0	0.45674	1	19619	19619		23.523	0.94304	1		+		33505	17697	23345	23421	33912	33912					0.09743285928607293
RRSPWGRGGQ	10	Unmodified	_RRSPWGRGGQ_					0	0	0			REV__ENST00000430262.2_1_17:47439361-47439412:-|nuORF	REV__ENST00000430262.2_1_17:47439361-47439412:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.8090209960938	2	578.807762	1155.60097	1.4642	0.00084748	0.80752	0.0004674	2.2717	0.0013149	578.8081584408338	25.632	0.1318	25.632	25.584	25.716	0					6	3	2	0	0	0	0.48965	1	8795	8795		46.457	3.5925	1	232870	+		33506	19155	23346	23422	33913	33913					0.02939522123278948
RRSRSTSKT	9	Unmodified	_RRSRSTSKT_					0	0	0		SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant;nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF	SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8069458007812	2	539.807428	1077.6003	0.30494	0.00016461	-2.8922	-0.0015613	-2.5873	-0.0013966	539.8057463949029	32.514	0.2542	32.514	32.385	32.639	0					9	6	2	0	0	0	0.51991	1	12390	12390		30.318	2.2362	1	62228			33507	3003	23347	23423	33914	33914					0.064606826835643
RRTGQVGPT	9	Unmodified	_RRTGQVGPT_					0	0	0		ENSG00000172927|ENST00000441339|MYEOV	ENSG00000172927|ENST00000441339|MYEOV	ENSG00000172927|ENST00000441339|MYEOV	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.27288818359375	2	486.27269	970.530826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.797	1	33.797	33.297	34.297	0								0	0	0	0.31838	1	11018	11018		31.53	1.0262	1				33508	6395	23348	23424	33915	33915					0.044382237348031595
RRTLHPAP	8	Unmodified	_RRTLHPAP_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2782287597656	2	474.280318	946.546083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.269	1	40.269	39.769	40.769	0								0	0	0	1.7419	1	15866	15866		37.028	12.826	1				33509	3737	23349	23425	33916	33916					0.07067135322643026
RRTLPVPF	8	Unmodified	_RRTLPVPF_					0	0	0			REV__ENSG00000137218|ENST00000373018|FRS3	REV__ENSG00000137218|ENST00000373018|FRS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2999572753906	2	493.300719	984.586885	-0.61039	-0.00030111	-0.51781	-0.00025543	-1.1282	-0.00055654	493.30057921981467	36.921	0.21565	36.921	36.778	36.994	0					8	4	2	0	0	0	0.57802	1	14365	14365		52.299	15.14	1	199580	+		33510	14910	23350	23426	33917	33917					0.09397476642277525
RRTNQLQR	8	Unmodified	_RRTNQLQR_					0	0	0		ENST00000417647.6_1_5:140032665-140033557:+|nuORF	ENST00000417647.6_1_5:140032665-140033557:+|nuORF	ENST00000417647.6_1_5:140032665-140033557:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.3119506835938	2	536.310138	1070.60572	5.0088	0.0026863	-1.2853	-0.00068931	3.7236	0.001997	536.3093548847996	30.36	0.20393	30.36	30.287	30.491	0					13	6	3	0	0	0	0.39125	1	9955	9955		71.877	3.0906	1	564790			33511	9376	23351	23427	33918	33918					0.07324406266025107
RRTRTGVSP	9	Unmodified	_RRTRTGVSP_					0	0	0			REV__ENST00000570986.1_1_17:4457199-4458649:-|nuORF	REV__ENST00000570986.1_1_17:4457199-4458649:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2998657226562	2	515.299239	1028.58392	3.258	0.0016788	-2.1098	-0.0010872	1.1482	0.00059169	515.7992144909683	36.442	0.515	36.442	36.297	36.812	0					39	10	6	0	0	0	0.27249	1	14134	14134		52.937	8.8199	1	2839500	+		33512	20378	23352	23428	33919	33919					0.07077601517471521
RRVDMGLF	8	Unmodified	_RRVDMGLF_					0	0	0			REV__ENST00000550106.5_1_12:95611896-95612004:+|nuORF	REV__ENST00000550106.5_1_12:95611896-95612004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2691345214844	2	497.268561	992.52257	-0.30524	-0.00015179	1.1085	0.00055123	0.80327	0.00039944	497.2691117119631	11.146	0.12332	11.146	11.07	11.193	0					12	6	3	0	0	0	0.7764	1	2122	2122		4.6817	0	1	146340	+		33513	20191	23353	23429	33920	33920					0.02600953493833913
RRVGRSHS	8	Unmodified	_RRVGRSHS_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7703857421875	2	477.770649	953.526744	0.41033	0.00019604	-0.18922	-9.0404E-05	0.22111	0.00010564	477.770547769993	15.9	0.13529	15.9	15.813	15.949	0					8	3	3	0	0	0	0.79882	1	4199	4199		19.36	2.8868	1	400610			33514	6041	23354	23430	33921	33921					0.048121790317509294
RRVLSHEKRE	10	Unmodified	_RRVLSHEKRE_					0	0	0			REV__ENST00000296292.7_1_3:53123294-53123450:-|nuORF	REV__ENST00000296292.7_1_3:53123294-53123450:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2540283203125	3	437.253098	1308.73747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.024	1	23.024	22.524	23.524	0								0	0	0	0.3998	1	6861	6861		30.569	2.9249	1		+		33515	18179	23355	23431	33922	33922					0.09544591563144422
RRVLVSDE	8	Unmodified	_RRVLVSDE_					0	0	0			REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6	REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2747497558594	2	487.274898	972.535243	-0.70006	-0.00034112	0.29673	0.00014459	-0.40333	-0.00019653	487.2752349522533	11.607	0.15461	11.607	11.495	11.65	0					7	4	2	0	0	0	0.78037	1	2408	2408		7.6903	0	1	288720	+		33516	20975	23356	23432	33923	33923					0.047876881577167296
RRVQHFKG	8	Unmodified	_RRVQHFKG_					0	0	0			REV__nc|ENSG00000176697|P23560-5|BDNF	REV__nc|ENSG00000176697|P23560-5|BDNF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2988891601562	2	514.299042	1026.58353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.278	1	54.278	53.778	54.778	0								0	0	0	1.7419	1	16473	16473		20.482	1.1219	1		+		33517	21131	23357	23433	33924	33924					0.07130226588265032
RRWISARQ	8	Unmodified	_RRWISARQ_					0	0	0		MKRN3|p.R348I|1|0.41|ENSG00000179455|chr15:23566825-23566825|G/T|missense_variant	MKRN3|p.R348I|1|0.41|ENSG00000179455|chr15:23566825-23566825|G/T|missense_variant	MKRN3|p.R348I|1|0.41|ENSG00000179455|chr15:23566825-23566825|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8096923828125	2	536.809774	1071.60499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.914	1	33.914	33.414	34.414	0								0	0	0	1.7419	1	12587	12587		33.516	1.9858	1				33518	11368	23358	23434	33925	33925					0.07205611616973329
RRWRQRKPG	9	Unmodified	_RRWRQRKPG_					0	0	0			REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant	REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.91497802734375	3	413.91464	1238.72209	1.0307	0.00042663	-0.22087	-9.142E-05	0.80986	0.00033521	413.9145695222336	26.128	2.8574	26.128	26	28.857	0					136	69	4	0	0	0	0.55379	1	9140	9140		26.693	26.693	1	3161800	+		33519	20680	23359	23435	33926	33926					0.11227769556603562
RRYGQKNK	8	Unmodified	_RRYGQKNK_					0	0	0		HACD3|p.K358N|1|0.19|ENSG00000074696|chr15:65576364-65576364|G/T|missense_variant	HACD3|p.K358N|1|0.19|ENSG00000074696|chr15:65576364-65576364|G/T|missense_variant	HACD3|p.K358N|1|0.19|ENSG00000074696|chr15:65576364-65576364|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2974853515625	2	525.301781	1048.58901	1.6269	0.00085463	-0.6033	-0.00031691	1.0236	0.00053771	525.301580020277	12.534	0.90237	12.534	12.446	13.349	0					29	20	3	0	0	0	0.73426	1	2863	2863		26.796	16.531	1	2930700			33520	11178	23360	23436	33927	33927					0.06665905380077675
RSADLTGLEK	10	Unmodified	_RSADLTGLEK_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2994384765625	2	545.29857	1088.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.089	1	24.089	23.589	24.589	0								0	0	0	0.05754	1	8066	8066		89.029	20.183	1				33521	7401	23361	23437	33928	33928					0.04183922638026161
RSADLTGLEK	10	Unmodified	_RSADLTGLEK_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2990112304688	2	545.29857	1088.58259	0.94333	0.0005144	-0.29716	-0.00016204	0.64616	0.00035235	545.298395817202	24.02	0.16429	24.02	23.915	24.079	0					5	3	2	0	0	0	0.18814	1	8363	8363		80.916	12.07	1	219990			33522	7401	23361	23437	33929	33929					0.04183922638026161
RSADLTGLEK	10	Unmodified	_RSADLTGLEK_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.298828125	2	545.29857	1088.58259	0.57212	0.00031198	0.14865	8.1061E-05	0.72078	0.00039304	545.2986382997753	23.989	0.21618	23.989	23.88	24.096	0					9	4	3	0	0	0	0.16745	1	8227	8227		83.647	16.153	1	318980			33523	7401	23361	23437	33930	33930					0.04183922638026161
RSAFSLTLR	9	Unmodified	_RSAFSLTLR_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.87347412109375	3	350.873336	1049.59818	0.45701	0.00016035	-0.71511	-0.00025091	-0.25811	-9.0562E-05	350.87316417520873	15.41	0.07514	15.41	15.354	15.429	0					4	2	2	0	0	0	0.48389	1	3452	3452		33.922	0	1	82575	+		33524	14693	23362	23438	33931	33931					0.07536253945750104
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.8889465332031	3	359.889097	1076.64546	0.45023	0.00016203	-0.70081	-0.00025221	-0.25058	-9.018E-05	359.8888060151079	20.992	0.54314	20.992	20.879	21.422	0					32	15	4	0	0	0	0.052435	2	5701	5701;5866		94.409	36.179	1	1102200			33525	1085	23363	23439	33932;33933	33932					0.11020533216742479
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.330810546875	2	539.330008	1076.64546	0.89823	0.00048444	-0.4737	-0.00025548	0.42453	0.00022896	539.3298132672423	20.987	0.32855	20.987	20.907	21.235	0					18	9	3	0	0	0	0.53618	1	5699	5699		28.081	8.0847	1	434380			33526	1085	23363	23439	33934	33934					0.11020533216742479
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.8889465332031	3	359.889097	1076.64546	-0.91972	-0.000331	0.63141	0.00022724	-0.28832	-0.00010376	359.889287420337	21.006	0.59365	21.006	20.927	21.52	0					45	18	4	0	0	0	0.021035	1	5965	5965		120.27	46.108	1	4363200			33527	1085	23363	23439	33935	33935					0.11020533216742479
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3303833007812	2	539.330008	1076.64546	-0.12754	-6.8788E-05	0.9568	0.00051603	0.82925	0.00044724	539.3305004491505	21.006	0.50175	21.006	20.927	21.428	0					31	15	3	0	0	0	0.27891	1	5968	5968		53.089	21.559	1	1130000			33528	1085	23363	23439	33936	33936					0.11020533216742479
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.88916015625	3	359.889097	1076.64546	1.4284	0.00051408	-1.8922	-0.00068096	-0.46372	-0.00016689	359.88862515540893	21.216	1.7497	21.216	21.112	22.862	0					74	35	5	0	0	0	0.079477	1	7010	7010		84.817	26.587	1	43036000			33529	1085	23363	23439	33937	33937					0.11020533216742479
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.330078125	2	539.330008	1076.64546	1.9447	0.0010488	-1.591	-0.00085806	0.35373	0.00019078	539.3290889135737	21.216	0.71309	21.216	21.112	21.825	0					34	14	3	0	0	0	0.21222	1	7013	7013		53.089	3.5529	1	9257000			33530	1085	23363	23439	33938	33938					0.11020533216742479
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.888916015625	3	359.889097	1076.64546	-0.094119	-3.3873E-05	-0.15987	-5.7535E-05	-0.25399	-9.1408E-05	359.88904785957254	21.107	0.84077	21.107	20.979	21.82	0					33	19	4	0	0	0	0.07561	1	6051	6051		86.189	19.269	1	1316100			33531	1085	23363	23439	33939	33939					0.11020533216742479
RSAFTVIRK	9	Unmodified	_RSAFTVIRK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.88897705078125	3	359.889097	1076.64546	1.2442	0.00044776	-1.8172	-0.000654	-0.57307	-0.00020624	359.888594755756	21.23	2.1088	21.23	21.126	23.235	0					94	42	5	0	0	0	0.020818	1	6863	6863		120.63	48.535	1	27180000			33532	1085	23363	23439	33940	33940					0.11020533216742479
RSAKSIFNK	9	Unmodified	_RSAKSIFNK_					0	0	0			REV__nc|ENSG00000136161|O95199-2|RCBTB2	REV__nc|ENSG00000136161|O95199-2|RCBTB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.87335205078125	3	350.873336	1049.59818	0.41529	0.00014571	-0.35627	-0.00012501	0.059018	2.0708E-05	350.87329084861847	15.313	0.086867	15.313	15.277	15.363	0					9	3	3	0	0	0	0.37197	1	3317	3317		51.193	3.5354	1	144820	+		33533	14854	23364	23440	33941	33941					0.07536253945750104
RSAPMDFALN	10	Unmodified	_RSAPMDFALN_					0	0	0		ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11;ARHGEF11|p.P557Lfs*9|1|0.24|ENSG00000132694|chr1:156954900-156954900|G/-|frameshift_variant	ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant	ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.2739868164062	2	561.274041	1120.53353	1.8234	0.0010234	-1.5128	-0.0008491	0.31059	0.00017433	561.2729425393055	34.949	0.21152	34.949	34.863	35.075	0					9	6	2	0	0	0	0.50881	1	13510	13510		44.377	1.5129	1	273360			33534	214	23365	23441	33942	33942					-0.021916889225394698
RSAPSGPVR	9	Unmodified	_RSAPSGPVR_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7622375488281	2	463.761958	925.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.547	1	15.547	15.047	16.047	0								0	0	0	0.077333	1	3402	3402		78.264	10.77	1				33535	4774	23366	23442	33943	33943					0.043628387060948626
RSAPSGPVR	9	Unmodified	_RSAPSGPVR_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7618713378906	2	463.761958	925.509363	0.066907	3.1029E-05	-0.43771	-0.00020299	-0.3708	-0.00017196	463.76187863353914	15.833	0.1758	15.833	15.75	15.926	0					9	4	3	0	0	0	0.017421	1	4182	4182		126.24	30.052	1	483340			33536	4774	23366	23442	33944	33944					0.043628387060948626
RSARNPNL	8	Unmodified	_RSARNPNL_					0	0	0		nc|ENSG00000101974|Q8NB49-3|ATP11C	nc|ENSG00000101974|Q8NB49-3|ATP11C	nc|ENSG00000101974|Q8NB49-3|ATP11C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2612609863281	2	464.259582	926.504612	4.1097	0.001908	-0.68092	-0.00031612	3.4287	0.0015918	464.2592624329056	29.535	0.17393	29.535	29.463	29.637	0					15	6	3	0	0	0	0.26534	1	9626	9626		94.006	14.555	1	158470			33537	11463	23367	23443	33945	33945					0.038419545633246344
RSASGLLLGLL	11	Unmodified	_RSASGLLLGLL_					0	0	0			REV__ENST00000592560.1_1_17:42436899-42441082:-|nuORF	REV__ENST00000592560.1_1_17:42436899-42441082:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3450927734375	2	550.345323	1098.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.377	1	13.377	12.877	13.877	0								0	0	0	0.45674	1	3243	3243		23.523	3.5259	1		+		33538	15787	23368	23444	33946	33946					0.1307026681113257
RSASGLLLGLL	11	Unmodified	_RSASGLLLGLL_					0	0	0			REV__ENST00000592560.1_1_17:42436899-42441082:-|nuORF	REV__ENST00000592560.1_1_17:42436899-42441082:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3458251953125	2	550.345323	1098.67609	0.61021	0.00033583	0.15575	8.5717E-05	0.76596	0.00042154	550.3454974047705	13.314	0.10811	13.314	13.258	13.366	0					4	2	2	0	0	0	0.40479	1	3070	3070		51.193	7.5419	1	95873	+		33539	15787	23368	23444	33947	33947					0.1307026681113257
RSASPNFNT	9	Unmodified	_RSASPNFNT_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2426452636719	2	497.241055	992.467557	0.71068	0.00035338	2.1298	0.001059	2.8405	0.0014124	497.2421417783069	11.95	0.10347	11.95	11.882	11.986	0					6	3	2	0	0	0	0.25761	1	2422	2422		54.722	3.3869	1	64143			33540	3854;10156	23369	23445	33948	33948					-0.028977617731015926
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.2109680175781	3	391.210788	1170.61053	0.56573	0.00022132	-0.84078	-0.00032892	-0.27505	-0.0001076	391.210535042265	12.772	0.26065	12.772	12.716	12.976	0					30	13	4	0	0	0	0.051542	1	2438	2438		121.29	76.265	1	1493400			33541	8869	23370	23446	33949	33949					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	586.3128051757812	2	586.312543	1170.61053	0.31653	0.00018559	-0.2964	-0.00017378	0.020133	1.1804E-05	586.3123327421689	12.767	0.30638	12.767	12.71	13.016	0					36	15	4	0	0	0	0.21827	1	2441	2441		72.096	9.9882	1	2280700			33542	8869	23370	23446	33950	33950					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.2109680175781	3	391.210788	1170.61053	-1.2327	-0.00048226	0.87916	0.00034394	-0.35358	-0.00013832	391.21120759646124	12.761	0.18297	12.761	12.71	12.893	0					23	10	4	0	0	0	5.4966E-05	1	2547	2547		152.67	95.523	1	847220			33543	8869	23370	23446	33951	33951					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.21075439453125	3	391.210788	1170.61053	0.33784	0.00013217	-0.97337	-0.00038079	-0.63552	-0.00024862	391.210505836561	13.016	0.46075	13.016	12.929	13.389	0					25	10	3	0	0	0	1.3931E-05	1	3060	3060		168.83	103.55	1	13152000			33544	8869	23370	23446	33952	33952					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.3123779296875	2	586.312543	1170.61053	-0.22053	-0.0001293	0.1972	0.00011562	-0.023333	-1.368E-05	586.3129152056591	13.009	0.81665	13.009	12.87	13.687	0					41	18	4	0	0	0	0.098165	1	3052	3052		90.149	15.894	1	28088000			33545	8869	23370	23446	33953	33953					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.210693359375	3	391.210788	1170.61053	-0.15624	-6.1122E-05	-0.34528	-0.00013508	-0.50152	-0.0001962	391.2106865886439	12.754	0.23132	12.754	12.7	12.932	0					27	12	4	0	0	0	2.461E-05	1	2489	2489		174.57	110.88	1	2347700			33546	8869	23370	23446	33954	33954					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.21075439453125	3	391.210788	1170.61053	0.4752	0.0001859	-1.1773	-0.00046055	-0.70206	-0.00027465	391.2106434118295	12.97	0.6113	12.97	12.87	13.481	0					34	13	5	0	0	0	2.2655E-06	1	2882	2882		203.03	121.5	1	41352000			33547	8869	23370	23446	33955	33955					0.032052456181418165
RSCAQARAGR	10	Unmodified	_RSCAQARAGR_					0	0	0		ENST00000444428.5_3_7:1040118-1094922:-|nuORF;ENST00000412051.5_2_7:1040118-1067924:-|nuORF	ENST00000444428.5_3_7:1040118-1094922:-|nuORF	ENST00000444428.5_3_7:1040118-1094922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2802734375	2	538.280523	1074.54649	0.29784	0.00016032	-0.78218	-0.00042103	-0.48434	-0.00026071	538.279984400934	25.18	0.27015	25.18	25.122	25.392	0					6	5	2	0	0	0	0.62235	1	8942	8942		31.53	4.8369	1	166350			33548	9314	23371	23447	33956	33956					0.012201869801856446
RSCFNMIK	8	Carbamidomethyl (C),Oxidation (M)	_RSC(Carbamidomethyl (C))FNM(Oxidation (M))IK_	RSC(1)FNMIK	RSCFNM(1)IK	RSC(46)FNMIK	RSCFNM(46)IK	0	1	1		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.2565307617188	2	536.257336	1070.50012	0.095025	5.0958E-05	-2.6167	-0.0014032	-2.5217	-0.0013523	536.2559222982328	18.894	0.18597	18.894	18.75	18.936	0					8	5	2	0	0	0	0.61938	1	5028	5028		45.952	8.1404	1	101160			33549	77	23372	23448	33957	33957	2	4			-0.03231013966092178
RSCPIGFWS	9	Unmodified	_RSCPIGFWS_					0	0	0			REV__ENST00000343702.8_1_12:96052970-96059626:-|nuORF	REV__ENST00000343702.8_1_12:96052970-96059626:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7523193359375	2	526.752744	1051.49094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.829	1	26.829	26.329	27.329	0								0	0	0	0.29774	1	8199	8199		35.618	2.1027	1		+		33550	18469	23373	23449	33958	33958					-0.032750392601201384
RSCVVIIQK	9	Carbamidomethyl (C)	_RSC(Carbamidomethyl (C))VVIIQK_	RSC(1)VVIIQK		RSC(80)VVIIQK		0	1	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.8241577148438	2	551.823701	1101.63285	0.74629	0.00041182	0.0072483	3.9998E-06	0.75354	0.00041582	551.8238489183839	23.192	0.26824	23.192	23.084	23.352	0					13	5	3	0	0	0	0.095583	1	7837	7837		80.455	9.1589	1	1325900			33551	1390;243	23374	23450	33959	33959	12				0.08609753762198125
RSDAELDPVG	10	Unmodified	_RSDAELDPVG_					0	0	0		EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7615356445312	2	529.759278	1057.504	3.4455	0.0018253	1.0097	0.00053492	4.4552	0.0023602	529.7597272707623	23.906	0.71416	23.906	23.65	24.364	0					38	14	4	0	0	0	0.14426	1	8181	8181		87.696	5.4559	1	6561600			33552	11109	23375	23451	33960	33960					-0.022449296670401964
RSDLKVIVM	9	Unmodified	_RSDLKVIVM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8128662109375	2	530.812802	1059.61105	0.95713	0.00050806	0.2242	0.00011901	1.1813	0.00062707	530.8129668797384	33.778	0.16051	33.778	33.69	33.851	0					7	4	2	0	0	0	0.24334	1	12947	12947		40.778	1.5253	1	52853			33553	2580	23376	23452	33961	33961					0.08362949013621801
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.807373046875	2	546.806031	1091.59751	0.46022	0.00025165	1.465	0.00080107	1.9252	0.0010527	546.8070795783591	24.973	0.82151	24.973	24.468	25.289	0					49	27	4	0	0	0	0.15558	1	7674	7674		66.962	19.305	1	652180			33554	7347	23377	23453	33962	33962					0.05537414506034111
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.8063354492188	2	546.806031	1091.59751	1.8521	0.0010128	0.078133	4.2723E-05	1.9303	0.0010555	546.806262834481	25.175	0.86089	25.175	24.645	25.506	0					49	17	5	0	0	0	0.090954	1	8901	8901		81.525	26.749	1	5030300			33555	7347	23377	23453	33963	33963					0.05537414506034111
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.87396240234375	3	364.873113	1091.59751	0.48341	0.00017638	2.6759	0.00097637	3.1593	0.0011528	364.8742989758465	25.116	0.9136	25.116	24.528	25.442	0					41	18	3	0	0	0	0.30841	1	8892	8892		65.157	22.293	1	1163000			33556	7347	23377	23453	33964	33964					0.05537414506034111
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.8064575195312	2	546.806031	1091.59751	1.9065	0.0010425	-0.93117	-0.00050917	0.97533	0.00053332	546.8054882218108	25.153	0.75279	25.153	24.661	25.414	0					38	15	5	0	0	0	0.061298	1	8735	8735		91.265	31.147	1	5635100			33557	7347	23377	23453	33965	33965					0.05537414506034111
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.8065185546875	2	546.806031	1091.59751	3.8082	0.0020823	-0.56373	-0.00030825	3.2445	0.0017741	546.8059997935432	25.095	1.1059	25.095	24.595	25.701	0					48	18	4	0	0	0	0.22823	1	8749	8749		58.246	12.274	1	2864800			33558	7347	23377	23453	33966	33966					0.05537414506034111
RSEEMGLIL	9	Unmodified	_RSEEMGLIL_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2792358398438	2	524.278792	1046.54303	1.8079	0.00094783	-1.7133	-0.00089825	0.094582	4.9588E-05	524.2783046226199	29.488	0.34234	29.488	29.364	29.706	0					13	8	3	0	0	0	0.0792	1	10529	10529		84.916	2.6105	1	793360			33559	1319	23378	23454	33967	33967					0.021620793630063417
RSEKPMAEDP	10	Unmodified	_RSEKPMAEDP_					0	0	0		SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.2738647460938	2	580.274238	1158.53392	-1.6868	-0.00097882	1.8903	0.0010969	0.20349	0.00011808	580.2752872647087	33.091	0.50447	33.091	32.878	33.382	0					24	15	3	0	0	0	0.65895	1	11527	11527		27.047	1.9213	1	108200			33560	2476	23379	23455	33968	33968					-0.03900313993358395
RSEKPPWY	8	Unmodified	_RSEKPPWY_					0	0	0		nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1	nc|ENSG00000168781|Q6PFW1-4|PPIP5K1	nc|ENSG00000168781|Q6PFW1-4|PPIP5K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7713623046875	2	531.771991	1061.52943	-0.22099	-0.00011751	-1.0376	-0.00055175	-1.2586	-0.00066926	531.7714881545853	40.288	0.23103	40.288	40.202	40.433	0					20	13	2	0	0	0	0.70055	1	13491	13491		33.516	1.5607	1	89463			33561	6123	23380	23456	33969	33969					0.0011258964605076471
RSELAATL	8	Unmodified	_RSELAATL_					0	0	0		CCDC170|p.F56C|1|0.17|ENSG00000120262|chr6:151536427-151536427|T/G|missense_variant;CCDC170|p.K600Sfs*26|1|0.23|ENSG00000120262|chr6:151615527-151615527|A/-|frameshift_variant;CCDC170|p.S639Ifs*34|1|0.21|ENSG00000120262|chr6:151615639-151615640|-/A|frameshift_variant;ENSG00000120262|ENST00000239374|CCDC170	CCDC170|p.F56C|1|0.17|ENSG00000120262|chr6:151536427-151536427|T/G|missense_variant	CCDC170|p.F56C|1|0.17|ENSG00000120262|chr6:151536427-151536427|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7451171875	2	430.745442	859.476331	0.77961	0.00033581	-1.0778	-0.00046426	-0.2982	-0.00012845	430.74499247857506	29.132	0.28983	29.132	29.007	29.296	0					16	7	3	0	0	0	0.35045	1	10362	10362		76.774	5.4784	1	940650			33562	401	23381	23457	33970	33970					0.04097211863393113
RSEMRKSN	8	Oxidation (M)	_RSEM(Oxidation (M))RKSN_		RSEM(1)RKSN		RSEM(82)RKSN	0	0	1			REV__ENSG00000171819|ENST00000376819|ANGPTL7	REV__ENSG00000171819|ENST00000376819|ANGPTL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2529907226562	2	512.25364	1022.49273	-0.45096	-0.00023101	-2.8576	-0.0014638	-3.3086	-0.0016948	512.2518305663172	27.536	0.26039	27.536	27.389	27.649	0					8	5	2	0	0	0	0.3049	1	10002	10002		82.241	10.945	1	144250	+		33563	16434	23382	23458	33971	33971		626			-0.01762030242161927
RSEQAIPL	8	Unmodified	_RSEQAIPL_					0	0	0			REV__ENST00000369760.8_1_6:80877466-80879537:+|nuORF	REV__ENST00000369760.8_1_6:80877466-80879537:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2585144042969	2	457.258717	912.50288	0.87902	0.00040194	-1.2777	-0.00058422	-0.39863	-0.00018228	457.2580987639723	13.297	0.29792	13.297	13.095	13.393	0					10	6	2	0	0	0	0.73426	1	3043	3043		29.15	1.2673	1	175460	+		33564	18521	23383	23459	33972	33972					0.04312900754723614
RSERHRVHG	9	Unmodified	_RSERHRVHG_					0	0	0		ENST00000272217.6_1_1:202104910-202113731:-|nuORF	ENST00000272217.6_1_1:202104910-202113731:-|nuORF	ENST00000272217.6_1_1:202104910-202113731:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.5386962890625	3	378.53935	1132.59622	0.023136	8.758E-06	-1.0095	-0.00038213	-0.98635	-0.00037337	378.53891642579373	27.083	0.27816	27.083	26.901	27.18	0					12	9	2	0	0	0	0.5741	1	8334	8334		24.519	6.2571	1	55149			33565	8382	23384	23460	33973	33973					0.03522637980518084
RSERISSL	8	Unmodified	_RSERISSL_					0	0	0		tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2649230957031	2	474.267073	946.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.942	1	27.942	27.442	28.442	0								0	0	0	1.7419	1	8672	8672		44.117	3.3386	1				33566	22690	23385	23461	33974	33974					0.04419401640677734
RSFEEAFQK	9	Unmodified	_RSFEEAFQK_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2859497070312	2	571.285463	1140.55637	1.6329	0.00093286	-0.99327	-0.00056744	0.63963	0.00036541	571.2848661662733	27.602	0.32156	27.602	27.39	27.712	0					10	6	3	0	0	0	0.15558	1	9913	9913		66.962	16.937	1	454400			33567	1720	23386	23462	33975	33975					-0.008283465334216089
RSFFLPGLC	9	Unmodified	_RSFFLPGLC_					0	0	0			REV__nc|ENSG00000138346|P51530-4|DNA2	REV__nc|ENSG00000138346|P51530-4|DNA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2715454101562	2	520.273312	1038.53207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.965	1	11.965	11.465	12.465	0								0	0	0	0.38735	1	2420	2420		14.664	0	1		+		33568	14969	23387	23463	33976	33976					0.01434721779355641
RSFGQFGI	8	Unmodified	_RSFGQFGI_					0	0	0		tr|U7SPS2|U7SPS2_FUSNUAntifreezeproteintypeIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01880PE=4SV=1	tr|U7SPS2|U7SPS2_FUSNUAntifreezeproteintypeIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01880PE=4SV=1	tr|U7SPS2|U7SPS2_FUSNUAntifreezeproteintypeIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01880PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.743896484375	2	456.240327	910.466101	-1.0789	-0.00049222	3.4032	0.0015527	2.3244	0.0010605	456.2417649310188	28.496	0.96205	28.496	28.101	29.063	0					59	36	2	0	0	0	0.69548	1	9154	9154		34.173	0.65696	1	123840			33569	22699	23388	23464	33977	33977					0.00728648928804887
RSFIEQLKQ	9	Unmodified	_RSFIEQLKQ_					0	0	0			REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant	REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.8247680664062	2	574.824755	1147.63496	1.0276	0.00059072	-0.58549	-0.00033655	0.44216	0.00025417	575.3256808696094	33.046	0.14966	33.046	32.96	33.109	0					13	7	2	0	0	0	0.42902	1	10710	10710		39.253	0	1	99597	+		33570	20779	23389	23465	33978	33978					0.06704505771654112
RSFIMGPGGMC	11	Carbamidomethyl (C)	_RSFIMGPGGMC(Carbamidomethyl (C))_	RSFIMGPGGMC(1)		RSFIMGPGGMC(44)		0	1	0			REV__ENSG00000198108|ENST00000305031|CHSY3	REV__ENSG00000198108|ENST00000305031|CHSY3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	606.7711791992188	2	606.769754	1211.52495	0.023654	1.4352E-05	1.9773	0.0011998	2.001	0.0012141	606.7710409063119	15.605	0.16843	15.605	15.546	15.714	0					7	3	3	0	0	0	0.49805	1	4164	4164		44.377	7.2181	1	261400	+		33571	17380	23390	23466	33979	33979	617				-0.07234702155028572
RSFKITSSNK	10	Unmodified	_RSFKITSSNK_					0	0	0		ENST00000515662.6_1_3:9408622-9412756:+|nuORF	ENST00000515662.6_1_3:9408622-9412756:+|nuORF	ENST00000515662.6_1_3:9408622-9412756:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.8311157226562	2	584.327662	1166.64077	3.2175	0.0018801	0.77768	0.00045442	3.9952	0.0023345	584.3279639670714	41.637	0.38363	41.637	41.465	41.848	0					20	10	3	0	0	0	0.52275	1	16562	16562		42.864	42.864	1	170970			33572	10267	23391	23467	33980	33980					0.06411604283334782
RSFLANTL	8	Unmodified	_RSFLANTL_					0	0	0			REV__ENST00000501122.2_1_11:65191059-65191125:+|nuORF	REV__ENST00000501122.2_1_11:65191059-65191125:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2601013183594	2	461.261259	920.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.388	1	31.388	30.888	31.888	0								0	0	0	1.7419	1	10396	10396		32.812	0	1		+		33573	19807	23392	23468	33981	33981					0.04453204617323081
RSFQEDIK	8	Unmodified	_RSFQEDIK_					0	0	0		tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.76837158203125	2	511.766906	1021.51926	0.0018137	9.2822E-07	0.60966	0.000312	0.61147	0.00031293	511.7676318891403	39.007	0.73243	39.007	38.702	39.434	0					54	26	3	0	0	0	0.24999	1	14850	14850		101.25	19.012	1	422240			33574	22761	23393	23469	33982	33982					0.009359819208157205
RSFQLVSL	8	Unmodified	_RSFQLVSL_					0	0	0			REV__ENST00000470379.1_1_1:167400920-167408655:-|nuORF	REV__ENST00000470379.1_1_1:167400920-167408655:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2767028808594	2	475.276909	948.539266	-0.43179	-0.00020522	-0.10367	-4.9271E-05	-0.53546	-0.00025449	475.2769008367306	37.733	0.25424	37.733	37.628	37.882	0					22	8	4	0	0	0	0.46013	1	14315	14315		64.207	0.67341	1	955940	+		33575	19464	23394	23470	33983	33983					0.06293777651421806
RSGAPMIKK	9	Unmodified	_RSGAPMIKK_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.8634948730469	3	329.863783	986.56952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.67	1	15.67	15.17	16.17	0								0	0	0	0.18541	1	4330	4330		44.639	2.2433	1				33576	1637	23395	23471	33984	33984					0.07569813044960938
RSGFLAAR	8	Unmodified	_RSGFLAAR_					0	0	0		NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2533874511719	2	439.253769	876.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.781	1	23.781	23.281	24.281	0								0	0	0	1.7419	1	6931	6931		37.159	8.0096	1				33577	5778	23396	23472	33985	33985					0.04979757539979346
RSGFRETAE	9	Unmodified	_RSGFRETAE_					0	0	0			REV__ENST00000562009.1_1_15:74654250-74654382:+|nuORF	REV__ENST00000562009.1_1_15:74654250-74654382:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7611083984375	2	526.759612	1051.50467	1.2157	0.00064038	1.3973	0.00073602	2.613	0.0013764	526.7602683635869	21.295	0.66651	21.295	20.876	21.542	0					28	15	3	0	0	0	0.24095	1	6162	6162		56.721	5.3856	1	246490	+		33578	20302	23397	23473	33986	33986					-0.019020902273268803
RSGFRETAE	9	Unmodified	_RSGFRETAE_					0	0	0			REV__ENST00000562009.1_1_15:74654250-74654382:+|nuORF	REV__ENST00000562009.1_1_15:74654250-74654382:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7608032226562	2	526.759612	1051.50467	1.628	0.00085755	0.45483	0.00023959	2.0828	0.0010971	526.7597822089926	21.429	0.81356	21.429	20.976	21.789	0					44	16	4	0	0	0	0.22837	1	6938	6938		58.23	1.5089	1	2105200	+		33579	20302	23397	23473	33987	33987					-0.019020902273268803
RSGGHAGM	8	Unmodified	_RSGGHAGM_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant;SMARCA4|p.I355Sfs*56|1|0.42|ENSG00000127616|chr19:10987864-10987864|C/-|frameshift_variant;SMARCA4|p.P109Rfs*194|1|0.35|ENSG00000127616|chr19:10985372-10985372|C/-|frameshift_variant	nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P109Rfs*194|1|0.35|ENSG00000127616|chr19:10985372-10985372|C/-|frameshift_variant	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.6806640625	2	386.679579	771.344606	3.2113	0.0012417	0.048335	1.869E-05	3.2596	0.0012604	386.67942288110294	48.49	0.13694	48.49	48.366	48.503	0					11	7	2	0	0	0	0.76283	1	19268	19268		25.45	10.786	1	40720			33580	3515;22425	23398	23474	33988	33988					-0.050212967053539614
RSGKDHAR	8	Unmodified	_RSGKDHAR_					0	0	0		ENST00000502464.5_1_5:65018131-65058826:+|nuORF	ENST00000502464.5_1_5:65018131-65058826:+|nuORF	ENST00000502464.5_1_5:65018131-65058826:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7491149902344	2	463.749382	925.484211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.81	1	10.81	10.31	11.31	0								0	0	0	1.7419	1	2091	2091		38.806	0	1				33581	10155	23399	23475	33989	33989					0.01848783903506046
RSGLASPL	8	Unmodified	_RSGLASPL_					0	0	0			REV__ENSG00000132825|ENST00000370996|PPP1R3D	REV__ENSG00000132825|ENST00000370996|PPP1R3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.7348327636719	2	400.734877	799.455202	0.83286	0.00033375	-0.69235	-0.00027745	0.1405	5.6305E-05	400.7345381460701	19.222	0.4127	19.222	19.066	19.479	0					17	8	4	0	0	0	0.43813	1	6051	6051		66.429	5.4573	1	1267000	+		33582	14680	23400	23476	33990	33990					0.047452465545120504
RSGLQRGKK	9	Unmodified	_RSGLQRGKK_					0	0	0		nc|ENSG00000121481|Q99496-2|RNF2	nc|ENSG00000121481|Q99496-2|RNF2	nc|ENSG00000121481|Q99496-2|RNF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3187866210938	2	515.317432	1028.62031	3.244	0.0016717	-0.29487	-0.00015195	2.9491	0.0015197	515.3172051053652	23.611	0.41329	23.611	23.501	23.914	0					17	8	3	0	0	0	0.14578	1	8037	8037		71.877	71.877	1	7120800			33583	11502	23401	23477	33991	33991					0.10714478414183759
RSGLTLNMRTE	11	Oxidation (M)	_RSGLTLNM(Oxidation (M))RTE_		RSGLTLNM(1)RTE		RSGLTLNM(76)RTE	0	0	1			REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant	REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	647.3304443359375	2	647.332618	1292.65068	-2.3489	-0.0015205	-0.27333	-0.00017693	-2.6222	-0.0016974	647.3324888275228	22.688	0.32705	22.688	22.454	22.781	0					21	7	4	0	0	0	0.18431	1	6766	6766		76.17	29.713	1	995610	+		33584	21466	23402	23478	33992	33992		775			0.016064242263837514
RSGNLRDR	8	Unmodified	_RSGNLRDR_					0	0	0		nc|ENSG00000117791|Q969Z3-2|MTARC2;ENSG00000117791|ENST00000366913|MTARC2;ENSG00000186205|ENST00000366910|MTARC1;nc|ENSG00000186205|Q5VT66-2|MTARC1	nc|ENSG00000117791|Q969Z3-2|MTARC2	nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.26885986328125	2	487.267939	972.521324	2.5528	0.0012439	-0.2808	-0.00013682	2.2721	0.0011071	487.2677834057678	28.632	0.61654	28.632	28.526	29.143	0					16	12	3	0	0	0	0.62515	1	10408	10408		45.022	45.022	1	1040800			33585	3054	23403	23479	33993	33993					0.03396455449274072
RSGPSAPFPSP	11	Unmodified	_RSGPSAPFPSP_					0	0	0			REV__ENST00000324225.8_1_11:117049569-117049740:+|nuORF	REV__ENST00000324225.8_1_11:117049569-117049740:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2806396484375	2	550.28018	1098.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.153	1	40.153	39.653	40.653	0								0	0	0	0.39271	1	13455	13455		38.754	0.94209	1		+		33586	18345	23404	23480	33994	33994					0.0004767081213685742
RSGRRPSNR	9	Unmodified	_RSGRRPSNR_					0	0	0			REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3073120117188	2	543.305387	1084.59622	3.6293	0.0019718	-0.30558	-0.00016602	3.3237	0.0018058	543.3050232279714	15.338	0.46734	15.338	14.978	15.445	0					28	9	4	0	0	0	0.048471	1	3985	3985		95.815	5.4453	1	1731400	+		33587	18116	23405	23481	33995	33995					0.05730637980514075
RSGSHPRFA	9	Unmodified	_RSGSHPRFA_					0	0	0			REV__ENST00000298125.6_1_13:52336362-52336515:+|nuORF	REV__ENST00000298125.6_1_13:52336362-52336515:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7646484375	2	507.765032	1013.51551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.76	1	16.76	16.26	17.26	0								0	0	0	0.3368	1	4854	4854		27.882	0	1		+		33588	18189	23406	23482	33996	33996					0.009293569376040978
RSGSSSSRSLG	11	Unmodified	_RSGSSSSRSLG_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.772216796875	2	540.773251	1079.53195	0.025917	1.4015E-05	-1.5254	-0.00082489	-1.4995	-0.00081088	540.772393627418	14.047	0.13784	14.047	13.99	14.128	0					12	7	2	0	0	0	0.33926	1	2975	2975		58.23	0.41864	1	318180			33589	2191	23407	23483	33997	33997					-0.004636066869579736
RSGYQLTLH	9	Unmodified	_RSGYQLTLH_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573;nc|ENSG00000189144|Q86YE8-2|ZNF573;nc|ENSG00000189144|Q86YE8-4|ZNF573;nc|ENSG00000189144|Q86YE8-3|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.788330078125	2	537.788173	1073.56179	-0.31572	-0.00016979	0.57063	0.00030688	0.25491	0.00013709	537.7886594781914	26.638	0.25193	26.638	26.574	26.826	0					14	9	2	0	0	0	0.1424	1	8404	8404		69.628	3.1983	1	195170			33590	7305	23408	23484	33998	33998					0.027953770490512397
RSHAPQPPAH	10	Unmodified	_RSHAPQPPAH_					0	0	0		nc|ENSG00000182648|Q8NI28|RNF32-DT	nc|ENSG00000182648|Q8NI28|RNF32-DT	nc|ENSG00000182648|Q8NI28|RNF32-DT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.284423828125	2	549.283589	1096.55262	0.25083	0.00013778	1.771	0.00097277	2.0218	0.0011105	549.2847116512672	35.21	0.1891	35.21	35.163	35.352	0					7	5	2	0	0	0	0.57532	1	13665	13665		37.159	1.5408	1	61691			33591	11670	23409	23485	33999	33999					0.008210284833694459
RSHGPVLRR	9	Unmodified	_RSHGPVLRR_					0	0	0			REV__ENST00000523366.1_1_5:172353721-172353871:+|nuORF	REV__ENST00000523366.1_1_5:172353721-172353871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3245239257812	2	539.323048	1076.63154	4.9271	0.0026573	-2.1199	-0.0011433	2.8072	0.001514	539.3219306354606	18.077	0.21834	18.077	17.924	18.143	0					13	6	3	0	0	0	0.61124	1	4641	4641		19.997	0.6368	1	229400	+		33592	19971	23410	23486	34000	34000					0.0962930050829982
RSHMSIVCKS	10	Unmodified	_RSHMSIVCKS_					0	0	0			REV__nc|ENSG00000223519|B7ZC32|KIF28P	REV__nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.2908935546875	2	574.289168	1146.56378	1.9475	0.0011184	0.55284	0.00031749	2.5003	0.0014359	574.2895069467319	12.713	0.71778	12.713	12.63	13.348	0					26	16	3	0	0	0	0.44971	1	2925	2925		46.457	46.457	1	1130600	+		33593	21217	23411	23487	34001	34001					-0.0036365352902976156
RSHPGMPL	8	Unmodified	_RSHPGMPL_					0	0	0			REV__nc|ENSG00000276717|A8MTI9|PRSS47P	REV__nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.734619140625	2	447.734354	893.454156	-0.43415	-0.00019438	1.1942	0.00053467	0.76001	0.00034028	447.7348841396155	12.755	0.11631	12.755	12.681	12.797	0					6	3	2	0	0	0	0.7914	1	2757	2757		14.664	0.88877	1	415610	+		33594	21252	23412	23488	34002	34002					0.0031670891397652667
RSHTATVR	8	Unmodified	_RSHTATVR_					0	0	0			REV__ENST00000429642.1_3_10:1094229-1094346:-|nuORF	REV__ENST00000429642.1_3_10:1094229-1094346:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2575988769531	2	464.259582	926.504612	-0.73452	-0.00034101	-3.3272	-0.0015447	-4.0617	-0.0018857	464.2579893922653	26.478	0.11378	26.478	26.438	26.551	0					7	4	2	0	0	0	0.75323	1	8335	8335		26.693	1.1189	1	34882	+		33595	19149	23413	23489	34003	34003					0.038419545633246344
RSHTGRGGF	9	Unmodified	_RSHTGRGGF_					0	0	0			REV__ENST00000379731.4_1_9:33113141-33113378:-|nuORF	REV__ENST00000379731.4_1_9:33113141-33113378:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7506408691406	2	487.749382	973.484211	-0.53171	-0.00025934	3.6095	0.0017605	3.0778	0.0015012	487.7509103401923	41.249	0.31392	41.249	41.074	41.387	0					11	7	2	0	0	0	0.42902	1	16365	16365		39.253	0.44669	1	55023	+		33596	18760	23414	23490	34004	34004					-0.0035921609646720754
RSIDIHLKK	9	Unmodified	_RSIDIHLKK_					0	0	0		ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9;ENST00000484629.1_1_3:47312946-47318864:-|nuORF;KIF9|p.D40Tfs*64|1|0.51|ENSG00000088727|chr3:47275467-47275467|T/-|frameshift_variant;KIF9|p.I115Sfs*12|1|0.13|ENSG00000088727|chr3:47273576-47273576|C/-|frameshift_variant	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.5644836425781	3	370.564502	1108.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.614	1	20.614	20.114	21.114	0								0	0	0	0.26578	1	6424	6424		41.427	0.64845	1				33597	1782	23415	23491	34005	34005					0.12168802388237054
RSIDKPLAR	9	Unmodified	_RSIDKPLAR_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.3203125	2	528.31964	1054.62473	2.1964	0.0011604	-1.13	-0.00059701	1.0664	0.00056338	528.3190856043218	18.765	0.17442	18.765	18.641	18.816	0					9	4	3	0	0	0	0.10821	1	5558	5558		70.816	10.698	1	586260			33598	9687	23416	23492	34006	34006					0.09959942837076596
RSIDKPLAR	9	Unmodified	_RSIDKPLAR_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.5487060546875	3	352.548852	1054.62473	0.49343	0.00017396	-0.55556	-0.00019586	-0.062127	-2.1903E-05	352.54866185913716	18.759	0.17405	18.759	18.629	18.803	0					12	4	4	0	0	0	0.17062	1	5536	5536		65.157	20.135	1	1114300			33599	9687	23416	23492	34007	34007					0.09959942837076596
RSIDKPLAR	9	Unmodified	_RSIDKPLAR_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.3202514648438	2	528.31964	1054.62473	0.70142	0.00037057	0.29483	0.00015576	0.99624	0.00052634	528.3198780867652	18.677	0.16357	18.677	18.572	18.736	0					7	3	3	0	0	0	0.21222	1	5646	5646		70.816	14.382	1	596650			33600	9687	23416	23492	34008	34008					0.09959942837076596
RSILTVSH	8	Unmodified	_RSILTVSH_					0	0	0			REV__ABCD2|p.A113T|1|0.4|ENSG00000173208|chr12:39619279-39619279|C/T|missense_variant	REV__ABCD2|p.A113T|1|0.4|ENSG00000173208|chr12:39619279-39619279|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.766357421875	2	456.766709	911.518865	-0.61241	-0.00027973	-0.18184	-8.3059E-05	-0.79426	-0.00036279	456.76653404425844	18.378	0.35842	18.378	18.114	18.473	0					21	8	3	0	0	0	0.5676	1	5378	5378		53.351	2.016	1	568190	+		33601	12041	23417	23493	34009	34009					0.05956606991617264
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.5820617675781	3	415.582221	1243.72483	1.0429	0.00043339	-1.1267	-0.00046823	-0.08383	-3.4838E-05	415.5816476413421	22.08	0.14269	22.08	21.99	22.132	0					7	3	3	0	0	0	0.37697	1	7127	7127		54.005	0.91605	1	683280			33602	2260	23418	23494	34010	34010					0.11272135380227155
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.9165954589844	3	415.582221	1243.72483	3.4122	0.001418	-4.3443	-0.0018054	-0.93216	-0.00038739	415.9150516731345	21.779	0.087494	21.779	21.715	21.803	0					4	2	2	0	0	0	0.12257	1	6310	6310		84.188	17.268	1	36898			33603	2260	23418	23494	34011	34011					0.11272135380227155
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.5819396972656	3	415.582221	1243.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.956	1	21.956	21.456	22.456	0								0	0	0	0.14433	1	7360	7360		69.216	9.2852	1				33604	2260	23418	23494	34012	34012					0.11272135380227155
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.58197021484375	3	415.582221	1243.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.855	1	21.855	21.355	22.355	0								0	0	0	0.14433	1	6410	6410		69.216	22.261	1				33605	2260	23418	23494	34013	34013					0.11272135380227155
RSIRTCYW	8	Unmodified	_RSIRTCYW_					0	0	0		ENST00000514698.5_1_4:995622-996120:+|nuORF	ENST00000514698.5_1_4:995622-996120:+|nuORF	ENST00000514698.5_1_4:995622-996120:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7692260742188	2	542.771468	1083.52838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.071	1	32.071	31.571	32.571	0								0	0	0	1.7419	1	11115	11115		37.159	3.6435	1				33606	10258	23419	23495	34014	34014					-0.010039479945362473
RSKAAWEAGK	10	Unmodified	_RSKAAWEAGK_					0	0	0		ENSG00000075239|ENST00000265838|ACAT1;ENST00000532792.5_1_11:108009720-108014786:+|nuORF;ENST00000531813.5_1_11:108004986-108013306:+|nuORF	ENSG00000075239|ENST00000265838|ACAT1	ENSG00000075239|ENST00000265838|ACAT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.305908203125	2	552.301447	1102.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.586	1	23.586	23.086	24.086	0								0	0	0	0.38475	1	7107	7107		35.152	2.3396	1				33607	1536	23420	23496	34015	34015					0.041150659403683676
RSKCHMLLA	9	Unmodified	_RSKCHMLLA_					0	0	0			REV__RSL1D1|p.T45M|1|0.27|ENSG00000171490|chr16:11850390-11850390|G/A|missense_variant	REV__RSL1D1|p.T45M|1|0.27|ENSG00000171490|chr16:11850390-11850390|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7835693359375	2	529.783521	1057.55249	-1.1885	-0.00062965	1.7339	0.00091861	0.54544	0.00028896	529.7845291519259	16.708	0.15885	16.708	16.583	16.741	0					9	5	2	0	0	0	0.32741	1	4021	4021		47.916	0.25827	1	189470	+		33608	21477	23421	23497	34016	34016					0.026015691675183916
RSKHQVLQ	8	Unmodified	_RSKHQVLQ_					0	0	0		ENST00000420836.2_1_12:68429646-68429838:+|nuORF	ENST00000420836.2_1_12:68429646-68429838:+|nuORF	ENST00000420836.2_1_12:68429646-68429838:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2915954589844	2	498.290882	994.567212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.466	1	11.466	10.966	11.966	0								0	0	0	1.7419	1	2353	2353		16.473	0	1				33609	9397	23422	23498	34017	34017					0.0697110063152877
RSKSEYLLL	9	Unmodified	_RSKSEYLLL_					0	0	0			REV__ENST00000504648.5_1_1:205492597-205500503:+|nuORF	REV__ENST00000504648.5_1_1:205492597-205500503:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8219604492188	2	554.821681	1107.62881	0.59756	0.00033154	-0.23623	-0.00013107	0.36133	0.00020047	554.8217297551449	35.637	0.15705	35.637	35.594	35.751	0					7	4	2	0	0	0	0.42902	1	13387	13387		39.253	0	1	125090	+		33610	14186	23423	23499	34018	34018					0.07929987540137517
RSKTSGCGRR	10	Unmodified	_RSKTSGCGRR_					0	0	0		ENST00000601135.5_1_19:42713857-42721849:-|nuORF	ENST00000601135.5_1_19:42713857-42721849:-|nuORF	ENST00000601135.5_1_19:42713857-42721849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.230224609375	2	554.29363	1106.57271	-0.015178	-8.413E-06	-1.8658	-0.0010342	-1.881	-0.0010426	554.2923850015156	17.525	0.11262	17.525	17.421	17.534	0					4	2	2	0	0	0	0.72365	1	5208	5208		18.262	0.79408	1	35886			33611	11034	23424	23500	34019	34019					0.023684561516802205
RSKVEAIL	8	Unmodified	_RSKVEAIL_					0	0	0			REV__ENSG00000088280|ENST00000336689|ASAP3	REV__ENSG00000088280|ENST00000336689|ASAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.284423828125	2	458.284734	914.554916	-0.68875	-0.00031564	0.075646	3.4668E-05	-0.6131	-0.00028097	458.2847081617351	27.79	0.36012	27.79	27.682	28.042	0					15	7	4	0	0	0	0.44433	1	10097	10097		65.803	2.4969	1	875890	+		33612	13390	23425	23501	34020	34020					0.09422064168484212
RSKYEADAI	9	Unmodified	_RSKYEADAI_					0	0	0		ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	ENSG00000078814|ENST00000262873|MYH7B	ENSG00000078814|ENST00000262873|MYH7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7725219726562	2	526.772188	1051.52982	0.10212	5.3793E-05	0.85987	0.00045296	0.96199	0.00050675	526.7724726738945	29.402	0.25771	29.402	29.313	29.57	0					14	6	3	0	0	0	0.15163	1	10486	10486		67.494	1.0644	1	426370			33613	1609	23426	23502	34021	34021					0.006119645752278302
RSLAQRWQ	8	Unmodified	_RSLAQRWQ_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.78955078125	2	522.788507	1043.56246	0.44131	0.00023071	1.6527	0.000864	2.094	0.0010947	522.7892995214074	30.986	0.26746	30.986	30.87	31.137	0					16	10	2	0	0	0	0.7126	1	10220	10220		31.955	0.42505	1	120280			33614	1529	23427	23503	34022	34022					0.042422164887511826
RSLASARPG	9	Unmodified	_RSLASARPG_					0	0	0		ENST00000251879.10_1_9:5629124-5629262:+|nuORF	ENST00000251879.10_1_9:5629124-5629262:+|nuORF	ENST00000251879.10_1_9:5629124-5629262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7617492675781	2	457.761958	913.509363	0.72185	0.00033044	-1.2771	-0.00058459	-0.55521	-0.00025416	457.76137448954563	15.036	0.11915	15.036	14.977	15.096	0					6	2	3	0	0	0	0.028876	1	4042	4042		110.12	5.3733	1	1010900			33615	8244	23428	23504	34023	34023					0.049148387060995447
RSLASARPG	9	Unmodified	_RSLASARPG_					0	0	0		ENST00000251879.10_1_9:5629124-5629262:+|nuORF	ENST00000251879.10_1_9:5629124-5629262:+|nuORF	ENST00000251879.10_1_9:5629124-5629262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7617492675781	2	457.761958	913.509363	-2.643	-0.0012099	2.8353	0.0012979	0.19229	8.8024E-05	457.7631256787526	14.845	0.087425	14.845	14.806	14.894	0					7	4	2	0	0	0	0.19605	1	3224	3224		62.107	7.3311	1	64025			33616	8244	23428	23504	34024	34024					0.049148387060995447
RSLCSSLTK	9	Unmodified	_RSLCSSLTK_					0	0	0			REV__ENST00000313432.5_1_12:110787716-110787863:+|nuORF	REV__ENST00000313432.5_1_12:110787716-110787863:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7710266113281	2	497.771134	993.527715	-0.025719	-1.2802E-05	-0.61438	-0.00030582	-0.6401	-0.00031862	497.7709525773703	20.487	0.11759	20.487	20.428	20.546	0					6	2	3	0	0	0	0.032383	1	6658	6658		90.37	5.0103	1	897610	+		33617	18285	23429	23505	34025	34025					0.030692125657765246
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.2924194335938	2	549.290548	1096.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.356	1	34.356	33.856	34.856	0								0	0	0	0.3063	1	11228	11228		33.922	2.3918	1				33618	1860	23430	23506	34026	34026					0.022122611917893664
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2911376953125	2	549.290548	1096.56654	1.8408	0.0010111	-1.122	-0.0006163	0.71884	0.00039485	549.2898950514132	34.576	0.36827	34.576	34.454	34.822	0					20	9	4	0	0	0	0.16806	1	12884	12884		65.465	14.13	1	494670			33619	1860	23430	23506	34027	34027					0.022122611917893664
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2910766601562	2	549.290548	1096.56654	4.6555	0.0025572	-3.1027	-0.0017043	1.5528	0.00085294	549.288616498488	34.377	0.12624	34.377	34.337	34.464	0					9	5	2	0	0	0	0.18416	1	11593	11593		63.534	19.157	1	55968			33620	1860	23430	23506	34028	34028					0.022122611917893664
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2906494140625	2	549.290548	1096.56654	0.53596	0.0002944	0.12633	6.9394E-05	0.66229	0.00036379	549.2904585518934	34.598	0.34818	34.598	34.504	34.852	0					18	9	3	0	0	0	0.029571	1	13334	13334		109.44	51.209	1	427490			33621	1860	23430	23506	34029	34029					0.022122611917893664
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.2911376953125	2	549.290548	1096.56654	0.52955	0.00029088	0.33159	0.00018214	0.86115	0.00047302	549.29070951056	34.546	0.70469	34.546	34.393	35.097	0					34	14	5	0	0	0	0.054723	1	13219	13219		93.598	40.661	1	863880			33622	1860	23430	23506	34030	34030					0.022122611917893664
RSLDTHVTK	9	Unmodified	_RSLDTHVTK_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7945556640625	2	528.793455	1055.57236	1.9981	0.0010566	-0.79578	-0.0004208	1.2023	0.00063578	529.2945591684199	16.513	0.099213	16.513	16.422	16.521	0					4	2	2	0	0	0	0.099758	1	4481	4481		79.489	29.953	1	102190			33623	1999	23431	23507	34031	34031					0.046793597034593404
RSLDTHVTK	9	Unmodified	_RSLDTHVTK_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.8646545410156	3	352.864729	1055.57236	0.70678	0.0002494	-1.0411	-0.00036736	-0.33432	-0.00011797	352.86436146277765	16.496	0.18324	16.496	16.407	16.59	0					10	4	3	0	0	0	0.51757	1	4494	4494		37.6	7.031	1	931230			33624	1999	23431	23507	34032	34032					0.046793597034593404
RSLDTHVTK	9	Unmodified	_RSLDTHVTK_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7940063476562	2	528.793455	1055.57236	0.90782	0.00048005	-0.063059	-3.3345E-05	0.84476	0.0004467	528.7933777960789	16.439	0.11763	16.439	16.38	16.497	0					4	2	2	0	0	0	0.10506	1	4707	4707		78.264	17.97	1	702180			33625	1999	23431	23507	34033	34033					0.046793597034593404
RSLDTHVTK	9	Unmodified	_RSLDTHVTK_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.86468505859375	3	352.864729	1055.57236	-0.050094	-1.7677E-05	-0.54332	-0.00019172	-0.59342	-0.0002094	352.8646255835299	16.459	0.11401	16.459	16.401	16.515	0					4	2	2	0	0	0	0.33548	1	4572	4572		54.343	22.709	1	266900			33626	1999	23431	23507	34034	34034					0.046793597034593404
RSLEAVVEIM	10	Unmodified	_RSLEAVVEIM_					0	0	0			REV__RGP1|p.G11Vfs*13|1|0.19|ENSG00000107185|chr9:35749784-35749784|G/-|frameshift_variant	REV__RGP1|p.G11Vfs*13|1|0.19|ENSG00000107185|chr9:35749784-35749784|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.8173828125	2	573.812999	1145.61144	3.3524	0.0019237	2.5837	0.0014826	5.9361	0.0034062	573.8141020587609	41.928	0.2564	41.928	41.768	42.024	0					11	7	2	0	0	0	0.64162	1	16704	16704		29.17	4.0441	1	66056	+		33627	13845	23432	23508	34035	34035					0.04446323942829622
RSLGPQPPLR	10	Unmodified	_RSLGPQPPLR_					0	0	0		SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C	SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant	SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.2243347167969	3	374.224368	1119.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.992	1	17.992	17.492	18.492	0								0	0	0	0.41767	1	5443	5443		25.126	6.0225	1				33628	4554	23433	23509	34036	34036					0.09623631728413784
RSLGWSFAE	9	Unmodified	_RSLGWSFAE_					0	0	0		ENST00000477081.1_1_17:59477759-59482423:+|nuORF	ENST00000477081.1_1_17:59477759-59482423:+|nuORF	ENST00000477081.1_1_17:59477759-59482423:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7606201171875	2	526.761623	1051.50869	0.39918	0.00021027	-1.5775	-0.00083099	-1.1784	-0.00062071	526.7606760067064	21.204	0.57833	21.204	20.814	21.393	0					38	18	3	0	0	0	0.33044	1	6065	6065		47.657	6.2307	1	262930			33629	9916	23434	23510	34037	34037					-0.015000007336084309
RSLLEPLGL	9	Unmodified	_RSLLEPLGL_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.3055114746094	2	499.305667	996.596781	-0.012266	-6.1245E-06	0.31982	0.00015969	0.30756	0.00015357	499.3056282622494	19.14	0.36401	19.14	18.883	19.247	0					14	7	3	0	0	0	0.19605	1	6013	6013		37.159	8.0096	1	146660			33630	4502	23435	23511	34038	34038					0.09834619856997051
RSLMQMIPG	9	Unmodified	_RSLMQMIPG_					0	0	0		tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7734375	2	516.77008	1031.52561	3.3015	0.0017061	2.7219	0.0014066	6.0234	0.0031127	516.7717809958488	22.061	0.32041	22.061	21.903	22.223	0					15	6	4	0	0	0	0.24095	1	7296	7296		56.721	1.9447	1	1192000			33631	22955	23436	23512	34039	34039					0.011104605563104997
RSLRLQQE	8	Unmodified	_RSLRLQQE_					0	0	0		ENSG00000161664|ENST00000293414|ASB16	ENSG00000161664|ENST00000293414|ASB16	ENSG00000161664|ENST00000293414|ASB16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.293701171875	2	515.293622	1028.57269	3.2411	0.0016701	-2.6209	-0.0013505	0.62022	0.00031959	515.2921716824598	21.764	0.17011	21.764	21.653	21.823	0					7	3	3	0	0	0	0.54629	1	7146	7146		55.504	0	1	643770			33632	5419	23437	23513	34040	34040					0.05954779423336731
RSLRRLDEE	9	Unmodified	_RSLRRLDEE_					0	0	0			REV__nc|ENSG00000083750|Q5VZM2|RRAGB	REV__nc|ENSG00000083750|Q5VZM2|RRAGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.3217163085938	2	587.320368	1172.62618	3.1954	0.0018767	-0.62771	-0.00036867	2.5677	0.001508	587.3199250891402	31.197	0.60542	31.197	30.848	31.454	0					35	12	4	0	0	0	0.14673	1	11581	11581		80.455	23.734	1	1295000	+		33633	20943	23438	23514	34041	34041					0.04677532135178808
RSLSDVAQAQ	10	Unmodified	_RSLSDVAQAQ_					0	0	0		ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;ENST00000472072.5_1_2:242045983-242047931:-|nuORF	ENSG00000115687|ENST00000234040|PASK	ENSG00000115687|ENST00000234040|PASK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.782958984375	2	537.780544	1073.54654	0.77872	0.00041878	1.9068	0.0010254	2.6855	0.0014442	537.7826549679727	26.251	0.27421	26.251	26.054	26.328	0					11	9	2	0	0	0	0.61238	1	7943	7943		32.751	1.1163	1	107020			33634	2932	23439	23515	34042	34042					0.01270465461175263
RSLSPRHHDS	10	Unmodified	_RSLSPRHHDS_					0	0	0			REV__ENSG00000069018|ENST00000513104|TRPC7	REV__ENSG00000069018|ENST00000513104|TRPC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.3040771484375	2	596.30251	1190.59047	3.1671	0.0018886	-1.5424	-0.00091976	1.6247	0.00096879	596.3019836395368	33.884	0.3278	33.884	33.757	34.085	0					18	7	4	0	0	0	0.026103	1	12912	12912		120.87	16.445	1	1437600	+		33635	13158	23440	23516	34043	34043					0.002794946781705221
RSLVELDEL	9	Unmodified	_RSLVELDEL_					0	0	0			REV__ENST00000417167.2_2_13:48667798-48669175:-|nuORF	REV__ENST00000417167.2_2_13:48667798-48669175:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2946166992188	2	537.295496	1072.57644	2.0981	0.0011273	-2.7104	-0.0014563	-0.61232	-0.000329	537.2940044225643	32.829	0.24754	32.829	32.668	32.915	0					11	6	3	0	0	0	0.1424	1	12100	12100		69.628	16.691	1	155550	+		33636	14851	23441	23517	34044	34044					0.04305404406500202
RSLVFPEAE	9	Unmodified	_RSLVFPEAE_					0	0	0		ENSG00000036473|ENST00000039007|OTC	ENSG00000036473|ENST00000039007|OTC	ENSG00000036473|ENST00000039007|OTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2774047851562	2	524.277106	1046.53966	0.092238	4.8358E-05	0.4338	0.00022743	0.52604	0.00027579	524.2772941422677	30.7	0.23848	30.7	30.596	30.835	0					12	5	3	0	0	0	0.12834	1	11103	11103		72.879	7.4139	1	303520			33637	1174	23442	23518	34045	34045					0.01825152580613576
RSLVRHKM	8	Unmodified	_RSLVRHKM_					0	0	0		ORAI2|p.T227M|1|0.35|ENSG00000160991|chr7:102446967-102446967|C/T|missense_variant	ORAI2|p.T227M|1|0.35|ENSG00000160991|chr7:102446967-102446967|C/T|missense_variant	ORAI2|p.T227M|1|0.35|ENSG00000160991|chr7:102446967-102446967|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.8042602539062	2	513.803103	1025.59165	0.040826	2.0977E-05	0.95625	0.00049133	0.99708	0.0005123	513.8036340414075	11.635	0.1379	11.635	11.588	11.726	0					14	6	4	0	0	0	0.79882	1	2180	2180		19.36	1.0356	1	975280			33638	11886	23443	23519	34046	34046					0.07988037513382551
RSLWRTMSRQ	10	Unmodified	_RSLWRTMSRQ_					0	0	0		ENST00000529835.6_1_11:10471944-10503658:+|nuORF	ENST00000529835.6_1_11:10471944-10503658:+|nuORF	ENST00000529835.6_1_11:10471944-10503658:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.90399169921875	3	440.903301	1319.68807	2.6326	0.0011607	-1.1142	-0.00049125	1.5184	0.00066947	440.9028691462466	31.394	0.45948	31.394	31.241	31.701	0					25	9	4	0	0	0	0.65895	1	11747	11747		27.047	1.9213	1	865330			33639	10417	23444	23520	34047	34047					0.041015602826746544
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.22784423828125	3	429.227561	1284.66085	1.0899	0.00046783	-1.1139	-0.00047812	-0.023973	-1.029E-05	429.2271257261116	21.153	0.11974	21.153	21.108	21.228	0					7	3	3	0	0	0	0.038697	1	5790	5790		110.64	65.997	1	146680			33640	11608	23445	23521	34048	34048					0.02991031951637524
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	643.3375854492188	2	643.337704	1284.66085	0.21759	0.00013999	-0.45363	-0.00029184	-0.23603	-0.00015185	643.3373783211588	21.17	0.14792	21.17	21.087	21.235	0					6	4	2	0	0	0	0.34233	1	5795	5795		27.644	0	1	58682			33641	11608	23445	23521	34049	34049					0.02991031951637524
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2279968261719	3	429.227561	1284.66085	0.24276	0.0001042	-0.82176	-0.00035272	-0.579	-0.00024852	429.22736887938913	21.496	0.27809	21.496	21.404	21.682	0					15	6	4	0	0	0	6.9661E-05	1	6830	6830		150.51	76.67	1	1265600			33642	11608	23445	23521	34050	34050					0.02991031951637524
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	643.3383178710938	2	643.337704	1284.66085	0.56511	0.00036356	-0.13966	-8.9851E-05	0.42544	0.0002737	643.337646723732	21.513	0.19002	21.513	21.42	21.61	0					12	4	4	0	0	0	0.061242	1	6859	6859		73.9	38.722	1	640390			33643	11608	23445	23521	34051	34051					0.02991031951637524
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.2277526855469	3	429.227561	1284.66085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.222	1	21.222	20.722	21.722	0								0	0	0	0.029288	1	6057	6057		104.07	57.115	1				33644	11608	23445	23521	34052	34052					0.02991031951637524
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.22735595703125	3	429.227561	1284.66085	-0.51972	-0.00022308	-0.036013	-1.5458E-05	-0.55573	-0.00023854	429.2275399105844	21.381	0.369	21.381	21.273	21.642	0					12	7	2	0	0	0	0.00089781	1	7092	7092		135.1	69.941	1	1983500			33645	11608	23445	23521	34053	34053					0.02991031951637524
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	643.337890625	2	643.337704	1284.66085	-0.51821	-0.00033338	0.69511	0.00044719	0.1769	0.00011381	643.338169453797	21.398	0.16754	21.398	21.29	21.458	0					5	3	2	0	0	0	0.10141	1	7102	7102		72.096	9.9882	1	328590			33646	11608	23445	23521	34054	34054					0.02991031951637524
RSMEAHNILSK	11	Unmodified	_RSMEAHNILSK_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	643.3369750976562	2	643.337704	1284.66085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.316	1	21.316	20.816	21.816	0								0	0	0	0.11772	1	6158	6158		48.188	19.018	1				33647	11608	23445	23521	34055	34055					0.02991031951637524
RSMEAHNILSK	11	Oxidation (M)	_RSM(Oxidation (M))EAHNILSK_		RSM(1)EAHNILSK		RSM(64)EAHNILSK	0	0	1		nc|ENSG00000160075|Q9NP77-2|SSU72;SSU72|p.L82Ffs*8|1|0.34|ENSG00000160075|chr1:1544981-1544982|-/A|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.5587463378906	3	434.559199	1300.65577	0.10649	4.6277E-05	-0.21453	-9.3226E-05	-0.10804	-4.6949E-05	434.5590900689135	18.381	0.15191	18.381	18.309	18.461	0					5	3	2	0	0	0	0.28575	1	5368	5368		64.224	11.135	1	94687			33648	11608	23445	23522	34056	34056		452			0.017467280890059556
RSMKMWRA	8	Oxidation (M)	_RSM(Oxidation (M))KMWRA_		RSM(0.989)KM(0.011)WRA		RSM(19)KM(-19)WRA	0	0	1			REV__ENST00000265109.7_1_5:34829894-34830826:+|nuORF	REV__ENST00000265109.7_1_5:34829894-34830826:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2739868164062	2	541.273321	1080.53209	0.64775	0.00035061	0.55714	0.00030156	1.2049	0.00065218	541.2736427762915	17.939	0.30945	17.939	17.734	18.044	0					17	6	4	0	0	0	0.58597	1	5258	5258		51.335	51.335	2	1296400	+		33649	18072	23446	23523	34057	34057		676			-0.004956014922981922
RSMMRLAF	8	2 Oxidation (M)	_RSM(Oxidation (M))M(Oxidation (M))RLAF_		RSM(1)M(1)RLAF		RSM(42)M(42)RLAF	0	0	2		SPPL2B|p.G128Vfs*32|2|0.31|ENSG00000005206|chr19:2338760-2338760|G/-|frameshift_variant	SPPL2B|p.G128Vfs*32|2|0.31|ENSG00000005206|chr19:2338760-2338760|G/-|frameshift_variant	SPPL2B|p.G128Vfs*32|2|0.31|ENSG00000005206|chr19:2338760-2338760|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2623901367188	2	522.259879	1042.50521	1.7869	0.00093323	1.6955	0.00088547	3.4824	0.0018187	522.2606142118786	41.957	0.1171	41.957	41.892	42.009	0					9	5	2	0	0	0	0.64144	1	16483	16483		42.396	7.1954	1	92530			33650	22487	23447	23524	34058	34058		813;814			-0.01434710103467296
RSMNSALAFVD	11	Unmodified	_RSMNSALAFVD_					0	0	0		EIF3B|p.G633S|1|0.32|ENSG00000106263|chr7:2375396-2375396|G/A|missense_variant	EIF3B|p.G633S|1|0.32|ENSG00000106263|chr7:2375396-2375396|G/A|missense_variant	EIF3B|p.G633S|1|0.32|ENSG00000106263|chr7:2375396-2375396|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	605.7991333007812	2	605.79788	1209.58121	1.7913	0.0010852	1.4827	0.00089819	3.274	0.0019834	605.7989475433913	41.345	0.50301	41.345	41.186	41.689	0					33	12	4	0	0	0	0.52726	1	16401	16401		40.058	7.3076	1	368130			33651	899	23448	23525	34059	34059					-0.015200347223753852
RSMNSALGK	9	Unmodified	_RSMNSALGK_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.25543212890625	2	482.255651	962.496749	0.36539	0.00017621	-0.30464	-0.00014692	0.060748	2.9296E-05	482.25557603980695	17.61	0.17237	17.61	17.551	17.724	0					8	4	3	0	0	0	0.035106	1	5004	5004		104.01	16.317	1	131540			33652	2432	23449	23526	34060	34060					0.014000592515458266
RSMVSTIMK	9	Unmodified	_RSMVSTIMK_					0	0	0		BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7838745117188	2	526.783187	1051.55182	0.95295	0.000502	-0.35843	-0.00018881	0.59452	0.00031318	526.7830853848636	26.786	0.3166	26.786	26.677	26.994	0					11	6	3	0	0	0	0.090954	1	9616	9616		81.525	2.074	1	707400			33653	301	23450	23527	34061	34061					0.028107297278211263
RSNKINSPPKQ	11	Unmodified	_RSNKINSPPKQ_					0	0	0			REV__ENSG00000010219|ENST00000543431|DYRK4	REV__ENSG00000010219|ENST00000543431|DYRK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.57366943359375	3	423.573837	1267.69968	-0.82312	-0.00034865	0.25502	0.00010802	-0.5681	-0.00024063	423.5739298037918	14.723	0.13337	14.723	14.643	14.777	0					9	3	4	0	0	0	0.16013	1	3641	3641		79.07	3.5043	1	527920	+		33654	12890	23451	23528	34062	34062					0.0765408057766308
RSNPYYIVK	9	Unmodified	_RSNPYYIVK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.3145751953125	2	570.314023	1138.61349	-1.3563	-0.00077351	2.653	0.0015131	1.2967	0.00073955	570.3156294481803	25.664	0.31758	25.664	25.46	25.778	0					13	8	2	0	0	0	0.22823	1	8213	8213		42.864	14.982	1	162900			33655	2513	23452	23529	34063	34063					0.04973120742943138
RSNPYYIVK	9	Unmodified	_RSNPYYIVK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.3143920898438	2	570.314023	1138.61349	3.4244	0.001953	-1.9025	-0.001085	1.5219	0.00086798	570.3130321783432	25.688	1.1029	25.688	25.179	26.282	0					35	20	3	0	0	0	0.11635	1	9042	9042		68.846	33.228	1	774770			33656	2513	23452	23529	34064	34064					0.04973120742943138
RSNSTLNKH	9	Unmodified	_RSNSTLNKH_					0	0	0		KANSL1L|p.N111Tfs*36|1|0.38|ENSG00000144445|chr2:210154251-210154251|T/-|frameshift_variant;KANSL1L|p.N311Mfs*63|4|0.21|ENSG00000144445|chr2:210153651-210153651|T/-|frameshift_variant;ENST00000453904.2_1_2:211018217-211034955:-|nuORF;KANSL1L|p.I396Sfs*4|1|0.17|ENSG00000144445|chr2:210129075-210129075|T/-|frameshift_variant;nc|ENSG00000144445|A0AUZ9-4|KANSL1L;KANSL1L|p.T655Dfs*2|1|0.13|ENSG00000144445|chr2:210040487-210040488|-/T|frameshift_variant;nc|ENSG00000144445|A0AUZ9-3|KANSL1L;KANSL1L|p.Y833Ifs*2|1|0.2|ENSG00000144445|chr2:210025171-210025172|-/T|frameshift_variant;nc|ENSG00000144445|A0AUZ9-2|KANSL1L;KANSL1L|p.K937Rfs*42|2|0.25|ENSG00000144445|chr2:210023103-210023103|T/-|frameshift_variant;ENSG00000144445|ENST00000281772|KANSL1L	KANSL1L|p.N111Tfs*36|1|0.38|ENSG00000144445|chr2:210154251-210154251|T/-|frameshift_variant	KANSL1L|p.N111Tfs*36|1|0.38|ENSG00000144445|chr2:210154251-210154251|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.779541015625	2	528.780879	1055.5472	-1.1747	-0.00062116	-1.6674	-0.00088171	-2.8421	-0.0015029	528.7803045243157	24.262	0.31572	24.262	24.11	24.426	0					19	7	4	0	0	0	0.30951	1	7542	7542		49.442	8.6634	1	1510000			33657	4617	23453	23530	34065	34065					0.0216530490090463
RSNVRLAKAL	10	Unmodified	_RSNVRLAKAL_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.7550048828125	2	564.354014	1126.69348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.234	1	16.234	15.734	16.734	0								0	0	0	0.4201	1	4599	4599		18.262	1.7889	1		+		33658	15726	23454	23531	34066	34066					0.13519607136777267
RSPAESRAPE	10	Unmodified	_RSPAESRAPE_					0	0	0		MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant;ENSG00000175471|ENST00000515393|MCTP1;MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant	MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2807006835938	2	550.278169	1098.54179	3.7453	0.0020609	0.78282	0.00043077	4.5281	0.0024917	550.2786183583718	40.254	0.32221	40.254	40.164	40.486	0					22	7	4	0	0	0	0.23612	1	15972	15972		75.043	0	1	1224300			33659	6560	23455	23532	34067	34067					-0.003544186815588546
RSPELLVGDT	10	Unmodified	_RSPELLVGDT_					0	0	0		nc|ENSG00000100490|Q00532-2|CDKL1;nc|ENSG00000100490|Q00532-3|CDKL1;ENSG00000100490|ENST00000395834|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.795654296875	2	543.793121	1085.57169	3.6557	0.0019879	1.2046	0.00065507	4.8603	0.002643	543.7935618470868	44.835	0.5017	44.835	44.626	45.128	0					45	21	4	0	0	0	0.28036	1	17944	17944		69.628	2.134	1	501530			33660	11459	23456	23533	34068	34068					0.032325202637593975
RSPHRRLR	8	Unmodified	_RSPHRRLR_					0	0	0			REV__ENSG00000048649|ENST00000308488|RSF1	REV__ENSG00000048649|ENST00000308488|RSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3302001953125	2	539.328665	1076.64278	2.0703	0.0011166	0.85189	0.00045945	2.9222	0.001576	539.3291414422872	21.23	0.71393	21.23	21.126	21.84	0					38	14	5	0	0	0	0.50061	1	6866	6866		58.782	14.665	1	6512600	+		33661	13021	23457	23534	34069	34069					0.10752122602457348
RSPLCQALI	9	Unmodified	_RSPLCQALI_					0	0	0		ENST00000495593.1_1_1:18021396-18023872:+|nuORF	ENST00000495593.1_1_1:18021396-18023872:+|nuORF	ENST00000495593.1_1_1:18021396-18023872:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.78277587890625	2	500.784044	999.553536	-1.0772	-0.00053947	-0.43475	-0.00021772	-1.512	-0.00075719	500.78377856594744	23.931	0.12104	23.931	23.869	23.991	0					6	4	2	0	0	0	0.24334	1	7260	7260		49.442	5.0644	1	69935			33662	10109	23458	23535	34070	34070					0.05374106808073975
RSPLTPAPGPP	11	Unmodified	_RSPLTPAPGPP_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3078002929688	2	545.306198	1088.59784	1.8678	0.0010185	1.5975	0.00087114	3.4653	0.0018896	545.3069335242214	29.171	0.28856	29.171	28.968	29.256	0					12	7	2	0	0	0	0.52516	1	10403	10403		42.396	4.5846	1	269610	+		33663	17792	23459	23536	34071	34071					0.057088342259021374
RSPMGAMNVGK	11	Unmodified	_RSPMGAMNVGK_					0	0	0		ZNF793|p.C288Vfs*113|2|0.29|ENSG00000188227|chr19:37537513-37537513|T/-|frameshift_variant;ZNF793|p.C344Rfs*60|1|0.12|ENSG00000188227|chr19:37537687-37537688|-/AGGGTCTC|frameshift_variant	ZNF793|p.C288Vfs*113|2|0.29|ENSG00000188227|chr19:37537513-37537513|T/-|frameshift_variant	ZNF793|p.C288Vfs*113|2|0.29|ENSG00000188227|chr19:37537513-37537513|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.5299072265625	3	383.195204	1146.56378	0.83803	0.00032113	0.57108	0.00021884	1.4091	0.00053997	383.19543739357084	12.722	0.42957	12.722	12.659	13.089	0					23	12	4	0	0	0	0.66391	1	2730	2730		31.068	2.9867	1	848640			33664	23175	23460	23537	34072	34072					-0.003636535290070242
RSPMTPRAA	9	Unmodified	_RSPMTPRAA_					0	0	0			REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant	REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7635192871094	2	493.763643	985.512734	0.64579	0.00031887	-1.2438	-0.00061414	-0.59801	-0.00029528	493.7631589244644	15.728	0.91397	15.728	15.417	16.331	0					30	18	3	0	0	0	0.48389	1	4369	4369		34.173	0.65696	1	703120	+		33665	21466	23461	23538	34073	34073					0.019397654884414806
RSPNLQTGP	9	Unmodified	_RSPNLQTGP_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.25921630859375	2	485.259248	968.503943	0.65142	0.00031611	-1.4405	-0.00069901	-0.78906	-0.0003829	485.25861552707755	13.009	0.16117	13.009	12.895	13.056	0					7	4	2	0	0	0	0.19605	1	2857	2857		62.107	0	1	273070	+		33666	15387	23462	23539	34074	34074					0.018431151236086407
RSPPKYRP	8	Unmodified	_RSPPKYRP_					0	0	0		MTERF2|p.N163Mfs*8|1|0.38|ENSG00000120832|chr12:106978227-106978227|T/-|frameshift_variant;ENSG00000120832|ENST00000240050|MTERF2	MTERF2|p.N163Mfs*8|1|0.38|ENSG00000120832|chr12:106978227-106978227|T/-|frameshift_variant	MTERF2|p.N163Mfs*8|1|0.38|ENSG00000120832|chr12:106978227-106978227|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.78741455078125	2	500.787976	999.561398	0.15287	7.6556E-05	-2.7342	-0.0013693	-2.5814	-0.0012927	500.7867981072045	33.567	0.27496	33.567	33.414	33.689	0					12	7	2	0	0	0	0.5676	1	11821	11821		53.351	2.016	1	81115			33667	3197	23463	23540	34075	34075					0.061600021198501054
RSPPPGMGL	9	Unmodified	_RSPPPGMGL_					0	0	0		ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.2416687011719	2	456.242012	910.469472	-0.38271	-0.00017461	-0.54333	-0.00024789	-0.92604	-0.0004225	456.2418831976811	28.506	1.6062	28.506	28.108	29.714	0					118	58	3	0	0	0	0.07136	3	8980	8845;8980;9131		87.696	36.361	1	473260			33668	2987	23464	23541	34076;34077;34078	34077					0.010655757111635467
RSPPPGMGL	9	Unmodified	_RSPPPGMGL_					0	0	0		ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.2416687011719	2	456.242012	910.469472	-0.60331	-0.00027526	-0.32813	-0.00014971	-0.93145	-0.00042497	456.2420595084241	28.793	2.0086	28.793	28.358	30.366	0					132	50	4	0	0	0	0.055856	3	10148	10148;10315;10483		93.195	38.301	1	2477200			33669	2987	23464	23541	34079;34080;34081	34079					0.010655757111635467
RSPPPGMGL	9	Unmodified	_RSPPPGMGL_					0	0	0		ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.2418518066406	2	456.242012	910.469472	0.72169	0.00032927	-2.1904	-0.00099937	-1.4688	-0.00067011	456.2410546013399	28.843	1.3413	28.843	28.275	29.616	0					60	28	4	0	0	0	0.24095	1	10618	10618		56.721	1.8265	1	656030			33670	2987	23464	23541	34082	34082					0.010655757111635467
RSPPPGMGL	9	Unmodified	_RSPPPGMGL_					0	0	0		ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.2417297363281	2	456.242012	910.469472	-0.56751	-0.00025892	-0.14902	-6.7988E-05	-0.71653	-0.00032691	456.24215126619055	28.794	1.4507	28.794	28.449	29.9	0					80	30	4	0	0	0	0.13267	3	10509	10509;10676;10849		71.877	16.983	1	838190			33671	2987	23464	23541	34083;34084;34085	34083					0.010655757111635467
RSPPPGMGL	9	Unmodified	_RSPPPGMGL_					0	0	0		ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	ENSG00000116560|ENST00000357214|SFPQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.24163818359375	2	456.242012	910.469472	-2.6367	-0.001203	1.5701	0.00071634	-1.0666	-0.00048661	456.2428920381	28.618	1.3627	28.618	28.176	29.539	0					77	34	4	0	0	0	0.27249	2	9610	9444;9610		52.937	19.444	1	366870			33672	2987	23464	23541	34086;34087	34087					0.010655757111635467
RSPREQNR	8	Unmodified	_RSPREQNR_					0	0	0			REV__ENSG00000154227|ENST00000679737|CERS3	REV__ENSG00000154227|ENST00000679737|CERS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7803344726562	2	521.778671	1041.54279	3.3933	0.0017706	-0.3629	-0.00018935	3.0304	0.0015812	521.7784392657454	12.375	1.0211	12.375	12.122	13.143	0					79	26	5	0	0	0	0.5676	1	2549	2549		53.351	0.41475	1	5802800	+		33673	15561	23465	23542	34088	34088					0.023678404779957418
RSPSHAQVET	10	Unmodified	_RSPSHAQVET_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.2798461914062	2	556.278169	1110.54179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.683	1	21.683	21.183	22.183	0								0	0	0	0.4201	1	6264	6264		21.96	3.6355	1		+		33674	13268	23466	23543	34089	34089					-0.009064186815749053
RSPTPTSLR	9	Unmodified	_RSPTPTSLR_					0	0	0			REV__ENST00000564529.1_1_15:75165550-75165682:-|nuORF	REV__ENST00000564529.1_1_15:75165550-75165682:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7879333496094	2	507.788173	1013.56179	0.89435	0.00045414	-1.6521	-0.00083893	-0.75777	-0.00038479	507.78745903053357	25.249	0.28573	25.249	25.06	25.345	0					20	6	5	0	0	0	0.38666	1	8614	8614		42.864	7.246	1	777240	+		33675	20325	23467	23544	34090	34090					0.05555377049040544
RSPVQTLI	8	Unmodified	_RSPVQTLI_					0	0	0			REV__ZNF516|p.V1038Sfs*122|1|0.38|ENSG00000101493|chr18:76379003-76379003|G/-|frameshift_variant	REV__ZNF516|p.V1038Sfs*122|1|0.38|ENSG00000101493|chr18:76379003-76379003|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.25335693359375	2	457.276909	912.539266	-0.43501	-0.00019892	-0.29956	-0.00013698	-0.73456	-0.0003359	457.2767502143351	14.919	0.26679	14.919	14.711	14.978	0					8	5	2	0	0	0	0.73426	1	3783	3783		29.15	2.4566	1	332130	+		33676	22324	23468	23545	34091	34091					0.07949777651447221
RSPWSSSRK	9	Unmodified	_RSPWSSSRK_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7902221679688	2	545.791247	1089.56794	-0.23648	-0.00012907	-0.57782	-0.00031537	-0.81429	-0.00044443	545.7909259676022	14.404	0.18396	14.404	14.279	14.463	0					14	8	3	0	0	0	0.10915	1	3108	3108		77.318	12.16	1	198660			33677	11216	23469	23546	34092	34092					0.026738952805771987
RSQAFRGVF	9	Unmodified	_RSQAFRGVF_					0	0	0		ENST00000361545.9_1_7:73819266-73819407:+|nuORF	ENST00000361545.9_1_7:73819266-73819407:+|nuORF	ENST00000361545.9_1_7:73819266-73819407:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2918090820312	2	534.290882	1066.56721	3.3808	0.0018064	-2.1208	-0.0011331	1.26	0.00067322	534.289888025869	39.806	0.81687	39.806	39.317	40.134	0					47	18	3	0	0	0	0.50461	1	15815	15815		31.955	1.6371	1	589060			33678	8877	23470	23547	34093	34093					0.03659100631534784
RSQASSFGAF	10	Unmodified	_RSQASSFGAF_					0	0	0			REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3	REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.25927734375	2	529.256705	1056.49886	3.4533	0.0018277	1.3253	0.00070142	4.7786	0.0025291	529.257360474341	36.005	0.41598	36.005	35.801	36.217	0					13	8	2	0	0	0	0.44601	1	13939	13939		51.193	3.2771	1	2478400	+		33679	13000	23471	23548	34094	34094					-0.027131887389941767
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8191528320312	2	536.818418	1071.62228	1.3553	0.00072753	-0.22438	-0.00012045	1.1309	0.00060708	536.8184541090362	15.245	0.11861	15.245	15.169	15.287	0					7	3	3	0	0	0	0.099758	1	3276	3276		72.879	26.927	1	525320			33680	2517	23472	23549	34095	34095					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.21466064453125	3	358.214704	1071.62228	0.12871	4.6104E-05	-0.23661	-8.4757E-05	-0.1079	-3.8653E-05	358.2146457993848	15.24	0.14602	15.24	15.161	15.307	0					7	4	2	0	0	0	0.19891	1	3284	3284		61.765	17.387	1	685010			33681	2517	23472	23549	34096	34096					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8189086914062	2	536.818418	1071.62228	2.1276	0.0011421	-1.1026	-0.00059191	1.025	0.00055022	536.8178358718042	15.537	0.29935	15.537	15.45	15.75	0					16	7	4	0	0	0	0.052435	1	4023	4023		78.264	14.958	1	2104100			33682	2517	23472	23549	34097	34097					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.21478271484375	3	358.214704	1071.62228	0.48532	0.00017385	-0.59478	-0.00021306	-0.10945	-3.9208E-05	358.2145888749563	15.529	0.25783	15.529	15.439	15.697	0					17	6	4	0	0	0	0.18505	1	4037	4037		63.426	2.4545	1	2575700			33683	2517	23472	23549	34098	34098					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8189086914062	2	536.818418	1071.62228	-0.43466	-0.00023333	1.2478	0.00066986	0.81318	0.00043653	536.8190555862674	15.275	0.11825	15.275	15.202	15.321	0					5	3	2	0	0	0	0.10506	1	3459	3459		62.107	10.772	1	267990			33684	2517	23472	23549	34099	34099					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.21478271484375	3	358.214704	1071.62228	-0.90311	-0.00032351	0.59773	0.00021412	-0.30538	-0.00010939	358.215042344558	15.275	0.11825	15.275	15.202	15.321	0					7	3	3	0	0	0	0.22823	1	3460	3460		58.246	3.4699	1	331720			33685	2517	23472	23549	34100	34100					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8193359375	2	536.818418	1071.62228	1.0446	0.00056075	0.50975	0.00027364	1.5543	0.00083439	536.8185313185083	15.308	0.12124	15.308	15.265	15.386	0					5	3	2	0	0	0	0.11635	1	3413	3413		68.846	12.125	1	400420			33686	2517	23472	23549	34101	34101					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.214599609375	3	358.214704	1071.62228	-2.0304	-0.00072731	1.5378	0.00055088	-0.49253	-0.00017643	358.21531989194466	15.3	0.08602	15.3	15.255	15.341	0					8	2	4	0	0	0	0.24169	1	3409	3409		56.632	13.768	1	891500			33687	2517	23472	23549	34102	34102					0.08933771107763278
RSQKPVMVK	9	Unmodified	_RSQKPVMVK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.8187255859375	2	536.818418	1071.62228	0.69953	0.00037552	0.38553	0.00020696	1.0851	0.00058248	536.8187834905597	15.468	0.24946	15.468	15.364	15.613	0					14	5	4	0	0	0	0.037098	1	4073	4073		85.862	27.08	1	2575300			33688	2517	23472	23549	34103	34103					0.08933771107763278
RSQLVLVTK	9	Unmodified	_RSQLVLVTK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.3331909179688	2	522.332216	1042.64988	2.1822	0.0011398	-0.7889	-0.00041207	1.3933	0.00072775	522.3321057826128	24.598	0.09161	24.598	24.552	24.644	0					6	2	3	0	0	0	0.040209	1	7292	7292		99.013	31.519	1	107020			33689	4265	23473	23550	34104	34104					0.13025997639647358
RSQLVLVTK	9	Unmodified	_RSQLVLVTK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.3338012695312	2	522.332216	1042.64988	2.0711	0.0010818	-0.78091	-0.00040789	1.2902	0.00067391	522.3318270158262	24.922	0.29622	24.922	24.836	25.132	0					17	7	3	0	0	0	0.14673	1	8443	8443		68.626	5.0919	1	692150			33690	4265	23473	23550	34105	34105					0.13025997639647358
RSQLVLVTK	9	Unmodified	_RSQLVLVTK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.333251953125	2	522.332216	1042.64988	5.1719	0.0027014	-3.5247	-0.0018411	1.6471	0.00086036	522.3305469853296	24.675	0.10099	24.675	24.594	24.695	0					5	3	2	0	0	0	0.12278	1	7571	7571		74.165	15.935	1	44052			33691	4265	23473	23550	34106	34106					0.13025997639647358
RSQSIVSSV	9	Unmodified	_RSQSIVSSV_					0	0	0		RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7686462402344	2	481.766906	961.519259	2.3652	0.0011395	0.94743	0.00045644	3.3126	0.0015959	481.7674847193194	32.598	0.86752	32.598	32.136	33.004	0					30	17	2	0	0	0	0.1115	1	12269	12269		76.774	0	1	3314900			33692	6408	23474	23551	34107	34107					0.03695981920827762
RSQVCMKLS	9	Unmodified	_RSQVCMKLS_					0	0	0		nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENSG00000181626|ENST00000587848|ANKRD62	nc|ENSG00000181626|A6NC57-2|ANKRD62	nc|ENSG00000181626|A6NC57-2|ANKRD62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2750244140625	2	526.272986	1050.53142	3.4569	0.0018193	0.037603	1.9789E-05	3.4945	0.0018391	526.2730453284951	41.472	0.42867	41.472	41.387	41.816	0					21	11	2	0	0	0	0.047412	1	16486	16486		96.19	96.19	1	1873200			33693	6859	23475	23552	34108	34108					0.008175590679911693
RSRALFAR	8	Unmodified	_RSRALFAR_					0	0	0			REV__ENST00000503811.5_1_5:138629500-138629704:+|nuORF	REV__ENST00000503811.5_1_5:138629500-138629704:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7945556640625	2	488.793592	975.572632	2.6033	0.0012725	-2.1398	-0.0010459	0.46353	0.00022657	488.7934355624489	41.991	0.26157	41.991	41.872	42.133	0					11	7	2	0	0	0	0.57171	1	16734	16734		52.937	14.183	1	119140	+		33694	19821	23476	23553	34109	34109					0.0838682421399426
RSRGPRAA	8	Unmodified	_RSRGPRAA_					0	0	0		ENST00000561122.1_1_15:57179569-57180061:-|nuORF	ENST00000561122.1_1_15:57179569-57180061:-|nuORF	ENST00000561122.1_1_15:57179569-57180061:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.7525634765625	2	435.754467	869.494381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.923	1	46.923	46.423	47.423	0								0	0	0	1.7419	1	17274	17274		14.664	0	1				33695	10704	23477	23554	34110	34110					0.054413916287558095
RSRLREGA	8	Unmodified	_RSRLREGA_					0	0	0			REV__ENSG00000102900|ENST00000308159|NUP93	REV__ENSG00000102900|ENST00000308159|NUP93	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7738342285156	2	472.772857	943.531161	2.4236	0.0011458	-0.37711	-0.00017829	2.0465	0.00096753	472.7727457238154	27.129	1.2715	27.129	26.722	27.993	0					47	25	4	0	0	0	0.32815	1	9683	9683		79.451	79.451	1	3823800	+		33696	13653	23478	23555	34111	34111					0.05713643454657813
RSRPPQPR	8	Unmodified	_RSRPPQPR_					0	0	0		ENST00000272647.9_1_2:128641813-128643454:-|nuORF	ENST00000272647.9_1_2:128641813-128643454:-|nuORF	ENST00000272647.9_1_2:128641813-128643454:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.28765869140625	2	497.288674	992.562795	-0.3059	-0.00015212	-1.6552	-0.00082313	-1.9611	-0.00097525	497.2879405794141	13.224	0.23422	13.224	13.105	13.34	0					14	6	4	0	0	0	0.66095	1	2968	2968		39.253	0	1	1154000			33697	8387	23479	23556	34112	34112					0.066216362086152
RSRPSHQR	8	Unmodified	_RSRPSHQR_					0	0	0			REV__SCAF4|p.R471Q|1|0.17|ENSG00000156304|chr21:31693395-31693395|C/T|missense_variant	REV__SCAF4|p.R471Q|1|0.17|ENSG00000156304|chr21:31693395-31693395|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2815551757812	2	512.28138	1022.54821	-0.31377	-0.00016074	0.51871	0.00026573	0.20495	0.00010499	512.2816363562127	15.27	0.080957	15.27	15.202	15.283	0					6	2	3	0	0	0	0.76283	1	3444	3444		25.45	25.45	1	267230	+		33698	21490	23480	23557	34113	34113					0.037835640604725995
RSRQGSAR	8	Unmodified	_RSRQGSAR_					0	0	0		ENSG00000250571|ENST00000340042|GLI4;ENST00000523812.1_1_8:144357822-144358971:+|nuORF	ENSG00000250571|ENST00000340042|GLI4	ENSG00000250571|ENST00000340042|GLI4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.25567626953125	2	459.254831	916.49511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.83	1	28.83	28.33	29.33	0								0	0	0	1.7419	1	10608	10608		47.657	1.7054	1				33699	7991	23481	23558	34114	34114					0.033521862778115974
RSRRTGPS	8	Unmodified	_RSRRTGPS_					0	0	0			REV__ENST00000491327.5_1_6:31938898-31939355:-|nuORF	REV__ENST00000491327.5_1_6:31938898-31939355:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7588195800781	2	458.757207	915.499861	2.5124	0.0011526	-0.13149	-6.0323E-05	2.3809	0.0010923	458.7572194068072	28.034	0.56311	28.034	27.78	28.343	0					31	11	4	0	0	0	0.37378	1	10073	10073		73.975	73.975	1	3181200	+		33700	12752	23482	23559	34115	34115					0.03873070420570457
RSRTKTID	8	Unmodified	_RSRTKTID_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.776611328125	2	488.780348	975.546142	-0.51719	-0.00025279	-1.2664	-0.00061901	-1.7836	-0.0008718	488.7791811951089	28.136	0.31791	28.136	27.959	28.277	0					11	6	3	0	0	0	0.66095	1	10186	10186		39.253	0	1	507690			33701	3781	23483	23560	34116	34116					0.0573909053200623
RSSCCCCC	8	Unmodified	_RSSCCCCC_					0	0	0			REV__ENSG00000080709|ENST00000673685|KCNN2	REV__ENSG00000080709|ENST00000673685|KCNN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.6176452636719	2	432.618104	863.221655	-0.46539	-0.00020134	0.48449	0.0002096	0.019094	8.2603E-06	432.618248998631	49.83	0.78165	49.83	49.458	50.239	0					37	32	2	0	0	0	0.78142	1	17924	17924		1.4648	1.4648	1	53358	+		33702	13297	23484	23561	34117	34117					-0.21542703806471764
RSSDSSSKLAK	11	Unmodified	_RSSDSSSKLAK_					0	0	0		AFF1|p.R820Tfs*98|1|0.12|ENSG00000172493|chr4:87125045-87125048|AGAA/-|frameshift_variant;nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;ENST00000503369.1_1_4:88036121-88046296:+|nuORF	AFF1|p.R820Tfs*98|1|0.12|ENSG00000172493|chr4:87125045-87125048|AGAA/-|frameshift_variant	AFF1|p.R820Tfs*98|1|0.12|ENSG00000172493|chr4:87125045-87125048|AGAA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.3126831054688	2	583.312209	1164.60986	1.3649	0.00079614	-0.82844	-0.00048324	0.53641	0.0003129	583.3116560285849	12.593	0.21147	12.593	12.51	12.721	0					8	5	3	0	0	0	0.13158	1	2865	2865		82.494	2.0397	1	230370			33703	86	23485	23562	34118	34118					0.03414406178421814
RSSEEEEI	8	Unmodified	_RSSEEEEI_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7208557128906	2	489.722361	977.430169	-0.13789	-6.7527E-05	-2.6421	-0.0012939	-2.78	-0.0013614	489.72130961093507	32.542	0.17028	32.542	32.417	32.587	0					12	5	3	0	0	0	0.44433	1	11307	11307		65.803	4.8312	1	175440	+		33704	14858	23486	23563	34119	34119					-0.059448978293630717
RSSEPGKLK	9	Unmodified	_RSSEPGKLK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2906494140625	2	501.290548	1000.56654	0.60017	0.00030086	-1.1908	-0.00059693	-0.59061	-0.00029607	501.29006400248886	17.82	0.098282	17.82	17.746	17.844	0					4	2	2	0	0	0	0.046074	1	5095	5095		101.25	23.935	1	74148			33705	2138	23487	23564	34120	34120					0.06628261191804086
RSSGFISEL	9	Unmodified	_RSSGFISEL_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2615661621094	2	498.261456	994.50836	-0.054618	-2.7214E-05	-0.92215	-0.00045947	-0.97676	-0.00048668	498.2617524392988	31.533	0.12837	31.533	31.46	31.589	0					7	5	2	0	0	0	0.42902	1	10146	10146		39.253	2.0937	1	44375			33706	1627	23488	23565	34121	34121					0.010885795465128467
RSSISPHVT	9	Unmodified	_RSSISPHVT_					0	0	0		ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2613830566406	2	492.267073	982.519593	-0.58575	-0.00028834	-3.6534	-0.0017985	-4.2392	-0.0020868	492.2652800224404	32.329	0.67247	32.329	32.219	32.892	0					21	13	2	0	0	0	0.055856	1	12164	12164		93.195	5.499	1	386270			33707	8653	23489	23566	34122	34122					0.027634016406636874
RSSLSVVVL	9	Unmodified	_RSSLSVVVL_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2994079589844	2	480.297842	958.581131	2.3182	0.0011134	1.0175	0.00048871	3.3357	0.0016021	480.2983734323216	44.502	0.23643	44.502	44.398	44.634	0					16	9	2	0	0	0	0.4966	1	17817	17817		32.812	2.3088	1	88360	+		33708	17662	23490	23567	34123	34123					0.10018333339962737
RSSQGLASF	9	Unmodified	_RSSQGLASF_					0	0	0			REV__ENSG00000135835|ENST00000367588|KIAA1614	REV__ENSG00000135835|ENST00000367588|KIAA1614	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.747802734375	2	476.745973	951.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.237	1	36.237	35.737	36.737	0								0	0	0	0.24544	1	13651	13651		44.377	3.599	1		+		33709	14824	23491	23568	34124	34124					-0.0002857376771316922
RSSQPPAIL	9	Unmodified	_RSSQPPAIL_					0	0	0			REV__nc|ENSG00000020256|Q9NTW7-6|ZFP64	REV__nc|ENSG00000020256|Q9NTW7-6|ZFP64	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7797546386719	2	484.779816	967.545079	-0.22113	-0.0001072	-0.064746	-3.1387E-05	-0.28587	-0.00013859	484.77976646557414	36.679	0.26942	36.679	36.555	36.824	0					15	7	3	0	0	0	0.42902	1	13837	13837		39.253	5.0803	1	189320	+		33710	12933	23492	23569	34125	34125					0.06000876163091107
RSSTRPHR	8	Unmodified	_RSSTRPHR_					0	0	0			REV__ENST00000310758.8_1_7:37382260-37488293:-|nuORF	REV__ENST00000310758.8_1_7:37382260-37488293:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.7745361328125	2	498.775931	995.537309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.023	1	16.023	15.523	16.523	0								0	0	0	1.7419	1	4499	4499		51.335	3.6781	1		+		33711	18268	23493	23570	34126	34126					0.039361616861810944
RSSVHRGP	8	Unmodified	_RSSVHRGP_					0	0	0			REV__nc|ENSG00000118855|Q9H3U5-5|MFSD1	REV__nc|ENSG00000118855|Q9H3U5-5|MFSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.2474365234375	2	448.246475	894.478397	0.09098	4.0781E-05	2.4783	0.0011109	2.5693	0.0011517	448.24763716430994	22.106	0.11478	22.106	22.023	22.138	0					8	3	3	0	0	0	0.64144	1	6205	6205		42.396	8.2236	1	63120	+		33712	20993	23494	23571	34127	34127					0.026936853918641646
RSTAERRSQ	9	Unmodified	_RSTAERRSQ_					0	0	0			REV__ENST00000460428.5_1_1:35641986-35642968:-|nuORF	REV__ENST00000460428.5_1_1:35641986-35642968:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7908935546875	2	545.789235	1089.56392	3.7562	0.0020501	-0.55454	-0.00030266	3.2017	0.0017474	545.788880078732	14.634	0.26898	14.634	14.525	14.794	0					10	5	3	0	0	0	0.03984	1	3696	3696		99.375	99.375	1	1243900	+		33713	19369	23495	23572	34128	34128					0.022718057868587493
RSTEKNALN	9	Unmodified	_RSTEKNALN_					0	0	0		ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1	ENSG00000172352|ENST00000382407|CDY1B	ENSG00000172352|ENST00000382407|CDY1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7740478515625	2	516.775262	1031.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.893	1	41.893	41.393	42.393	0								0	0	0	0.30504	1	15901	15901		34.173	0	1				33714	3609	23496	23573	34129	34129					0.021464828067564667
RSTEVVNLK	9	Unmodified	_RSTEVVNLK_					0	0	0			REV__TDRD5|p.K412Nfs*17|1|0.14|ENSG00000162782|chr1:179634560-179634560|A/-|frameshift_variant	REV__TDRD5|p.K412Nfs*17|1|0.14|ENSG00000162782|chr1:179634560-179634560|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3037719726562	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.376	1	49.376	48.876	49.876	0								0	0	0	0.3428	1	18560	18560		26.693	4.733	1		+		33715	15842	23497	23574	34130	34130					0.07224530363282611
RSTGPSLTH	9	Unmodified	_RSTGPSLTH_					0	0	0			REV__ENST00000406438.4_1_17:18226882-18227203:+|nuORF	REV__ENST00000406438.4_1_17:18226882-18227203:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.25067138671875	2	478.251423	954.488293	-0.11662	-5.5775E-05	-0.30431	-0.00014554	-0.42094	-0.00020131	478.25117802725447	14.116	0.1596	14.116	14.041	14.201	0					5	3	2	0	0	0	0.12239	1	3593	3593		74.255	7.8258	1	47258	+		33716	18975	23498	23575	34131	34131					0.00922828606553594
RSTIATDLAP	10	Unmodified	_RSTIATDLAP_					0	0	0			REV__ENSG00000146216|ENST00000259750|TTBK1	REV__ENSG00000146216|ENST00000259750|TTBK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7877807617188	2	522.787838	1043.56112	1.0518	0.00054989	-0.56088	-0.00029322	0.49095	0.00025666	522.7872732425193	24.619	0.11576	24.619	24.561	24.677	0					4	2	2	0	0	0	0.59277	1	8650	8650		35.152	2.3396	1	122830	+		33717	15305	23499	23576	34132	34132					0.04108537609340601
RSTLNGVLKG	10	Unmodified	_RSTLNGVLKG_					0	0	0		DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8120727539062	2	522.811648	1043.60874	0.44727	0.00023384	1.8512	0.0009678	2.2984	0.0012016	522.8127701485568	12.876	0.15677	12.876	12.79	12.947	0					5	3	2	0	0	0	0.59277	1	2871	2871		35.152	0.97948	1	31037			33718	848	23500	23577	34133	34133					0.08868236600187629
RSTRASSCTL	10	Unmodified	_RSTRASSCTL_					0	0	0			REV__HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	REV__HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2743530273438	2	541.274572	1080.53459	1.7116	0.00092647	-2.3374	-0.0012652	-0.62574	-0.0003387	541.2731046116938	17.705	0.22056	17.705	17.558	17.779	0					15	6	3	0	0	0	0.536	1	4250	4250		41.427	3.6151	1	168280	+		33719	20748	23501	23578	34134	34134					-0.0024547455363972404
RSTSLGLSTVL	11	Unmodified	_RSTSLGLSTVL_					0	0	0			REV__ENSG00000249471|ENST00000336614|ZNF324B	REV__ENSG00000249471|ENST00000336614|ZNF324B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.3307495117188	2	567.32987	1132.64519	1.4228	0.00080721	-0.068365	-3.8785E-05	1.3545	0.00076843	567.3297187462398	52.048	1.0414	52.048	51.676	52.718	0					135	66	3	0	0	0	0.75295	1	16089	16089		22.58	22.58	1	207530	+		33720	17723	23502	23579	34135	34135					0.08417068706239661
RSTVPTPAK	9	Unmodified	_RSTVPTPAK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.27734375	2	478.779816	955.545079	-0.11579	-5.5438E-05	-0.85714	-0.00041038	-0.97293	-0.00046582	478.7795539299531	16.773	0.69964	16.773	16.28	16.98	0					40	14	4	0	0	0	0.17854	1	4685	4685		64.207	7.4862	1	874710			33721	6454	23503	23580	34136	34136					0.0655287616308442
RSVEYVHY	8	Unmodified	_RSVEYVHY_					0	0	0			REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7622680664062	2	526.761623	1051.50869	1.7088	0.00090013	-2.8929	-0.0015239	-1.1841	-0.00062376	526.7602464207249	21.227	0.48285	21.227	21.033	21.516	0					21	10	3	0	0	0	0.72381	1	6082	6082		30.504	2.6214	1	183040	+		33722	19386	23504	23581	34137	34137					-0.015000007336084309
RSVGDPIL	8	Unmodified	_RSVGDPIL_					0	0	0			REV__FRYL|p.M572V|1|0.26|ENSG00000075539|chr4:48586655-48586655|T/C|missense_variant	REV__FRYL|p.M572V|1|0.26|ENSG00000075539|chr4:48586655-48586655|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.7476501464844	2	428.747985	855.481417	-0.42552	-0.00018244	-1.033	-0.0004429	-1.4585	-0.00062534	428.74754730761777	15.322	0.26767	15.322	15.162	15.429	0					7	5	2	0	0	0	0.3961	1	4023	4023		71.296	2.4496	1	790560	+		33723	20681	23505	23582	34138	34138					0.04789515726008631
RSVGVCVLP	9	Unmodified	_RSVGVCVLP_					0	0	0			REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.263427734375	2	465.265487	928.516422	0.67755	0.00031524	-0.19628	-9.1321E-05	0.48127	0.00022392	465.26545461242284	30	0.91074	30	29.553	30.464	0					59	19	4	0	0	0	0.45358	1	11064	11064		37.159	0	1	3432900	+		33724	12911	23506	23583	34139	34139					0.04930435262303945
RSVHLGHSK	9	Unmodified	_RSVHLGHSK_					0	0	0		ENST00000409711.1_1_2:101619263-101620675:+|nuORF	ENST00000409711.1_1_2:101619263-101620675:+|nuORF	ENST00000409711.1_1_2:101619263-101620675:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.8617248535156	3	340.86143	1019.56246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.862	1	13.862	13.362	14.362	0								0	0	0	0.079836	1	3472	3472		77.533	24.444	1				33725	9301	23507	23584	34140	34140					0.05346216488760547
RSVKNRAL	8	Unmodified	_RSVKNRAL_					0	0	0			REV__ENSG00000139330|ENST00000266719|KERA	REV__ENSG00000139330|ENST00000266719|KERA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2943420410156	2	472.293425	942.572297	2.4468	0.0011556	0.038746	1.8299E-05	2.4856	0.0011739	472.29340303325716	41.514	0.41491	41.514	41.3	41.715	0					21	10	3	0	0	0	0.46905	1	16507	16507		63.306	63.306	1	484800	+		33726	15024	23508	23585	34141	34141					0.0987140449412891
RSVLSDQI	8	Unmodified	_RSVLSDQI_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-4|HHAT	REV__nc|ENSG00000054392|Q5VTY9-4|HHAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2558288574219	2	459.256174	916.497795	-2.6126	-0.0011999	2.2239	0.0010214	-0.38871	-0.00017852	459.2571542002033	27.491	0.25445	27.491	27.361	27.616	0					11	6	2	0	0	0	0.63077	1	8973	8973		44.117	1.2525	1	261980	+		33727	20930	23509	23586	34142	34142					0.03620596892096728
RSVNEDDN	8	Unmodified	_RSVNEDDN_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7034912109375	2	474.704503	947.394452	-0.46492	-0.0002207	-1.1244	-0.00053377	-1.5893	-0.00075447	474.70392349842746	28.393	0.24698	28.393	28.279	28.526	0					13	6	3	0	0	0	0.69548	1	10022	10022		34.173	1.3601	1	252740			33728	6794	23510	23587	34143	34143					-0.08134935286375367
RSVRDFKK	8	Unmodified	_RSVRDFKK_					0	0	0			REV__POLR2H|p.G19S|1|0.18|ENSG00000163882|chr3:184363547-184363547|G/A|missense_variant	REV__POLR2H|p.G19S|1|0.18|ENSG00000163882|chr3:184363547-184363547|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.30029296875	2	518.306532	1034.59851	1.579	0.00081838	-1.4985	-0.00077667	0.080487	4.1717E-05	518.305623335715	14.449	0.47164	14.449	14.239	14.711	0					19	9	4	0	0	0	0.5676	1	3540	3540		53.351	0	1	2802200	+		33729	15929	23511	23588	34144	34144					0.08259673665611444
RSVSQSRLG	9	Unmodified	_RSVSQSRLG_					0	0	0		nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.27618408203125	2	495.277972	988.541391	-0.040612	-2.0114E-05	-3.7981	-0.0018811	-3.8387	-0.0019012	495.27623129744404	30.375	0.21183	30.375	30.317	30.529	0					6	4	2	0	0	0	0.44593	1	11360	11360		37.812	6.2817	1	88864			33730	11828	23512	23589	34145	34145					0.04666206389254057
RSVSRVRP	8	Unmodified	_RSVSRVRP_					0	0	0			REV__ENST00000248846.9_2_22:50664617-50678653:-|nuORF	REV__ENST00000248846.9_2_22:50664617-50678653:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7922668457031	2	478.79105	955.567546	2.2655	0.0010847	0.42756	0.00020471	2.6931	0.0012894	478.7912570096437	31.641	0.21385	31.641	31.537	31.751	0					9	4	3	0	0	0	0.41701	1	11862	11862		68.787	68.787	1	499520	+		33731	17958	23513	23590	34146	34146					0.08798520351376737
RSVVCWRK	8	Unmodified	_RSVVCWRK_					0	0	0			REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2874755859375	2	517.289828	1032.5651	0.037293	1.9291E-05	-4.016	-0.0020775	-3.9787	-0.0020582	517.2872884338636	33.883	0.19253	33.883	33.777	33.97	0					18	7	3	0	0	0	0.5676	1	11428	11428		53.351	3.9099	1	170170	+		33732	15108	23514	23591	34147	34147					0.05012348622040008
RSWASLVL	8	Unmodified	_RSWASLVL_					0	0	0		GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant;nc|ENSG00000089597|Q14697-3|GANAB;ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	GANAB|p.L23*|4|0.22|ENSG00000089597|chr11:62639702-62639702|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2732238769531	2	466.271627	930.528701	0.43945	0.0002049	-0.42966	-0.00020034	0.0097857	4.5628E-06	466.2714862445349	36.329	0.43652	36.329	36.211	36.647	0					25	12	3	0	0	0	0.5535	1	13798	13798		54.776	6.8607	1	689260			33733	1817	23515	23592	34148	34148					0.060657949969822766
RSWNWILHK	9	Unmodified	_RSWNWILHK_					0	0	0		ENST00000606522.1_1_6:10744394-10747789:-|nuORF	ENST00000606522.1_1_6:10744394-10747789:-|nuORF	ENST00000606522.1_1_6:10744394-10747789:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	620.3438720703125	2	620.340907	1238.66726	3.0967	0.001921	1.6025	0.00099409	4.6992	0.0029151	620.3418121662169	17.555	0.21889	17.555	17.498	17.717	0					7	4	3	0	0	0	0.31937	1	5098	5098		33.922	3.418	1	517250			33734	11081	23516	23593	34149	34149					0.05747337965294719
RSWRQGSP	8	Unmodified	_RSWRQGSP_					0	0	0			REV__ENST00000420902.1_1_22:50006877-50007000:-|nuORF	REV__ENST00000420902.1_1_22:50006877-50007000:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2509765625	2	487.251757	972.488962	-0.33066	-0.00016112	-1.4971	-0.00072945	-1.8277	-0.00089056	487.25103662097825	34.736	0.13154	34.736	34.68	34.811	0					5	3	2	0	0	0	0.6088	1	12973	12973		47.657	3.2801	1	95091	+		33735	19076	23517	23594	34150	34150					0.00161668046291652
RSYDLSSV	8	Unmodified	_RSYDLSSV_					0	0	0			REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7320556640625	2	463.732532	925.45051	-2.3904	-0.0011085	1.671	0.00077488	-0.71946	-0.00033364	463.7332543131653	33.347	0.17079	33.347	33.28	33.451	0					10	5	2	0	0	0	0.60719	1	11689	11689		47.916	1.9636	1	131770	+		33736	15983	23518	23595	34151	34151					-0.015196823789096925
RSYHLQIVTK	10	Unmodified	_RSYHLQIVTK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.57537841796875	3	415.575178	1243.70371	-1.4727	-0.000612	1.5632	0.00064965	0.090587	3.7646E-05	415.5759332109364	24.229	0.38491	24.229	24.119	24.504	0					18	12	2	0	0	0	0.13359	1	7393	7393		89.561	10.072	1	134320			33737	3709	23519	23596	34152	34152					0.09160170071368157
RSYMSFSMK	9	Unmodified	_RSYMSFSMK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.7655639648438	2	568.764994	1135.51544	0.4221	0.00024008	0.1025	5.8296E-05	0.5246	0.00029837	568.7649287130702	31.877	0.16675	31.877	31.768	31.935	0					6	3	2	0	0	0	0.11411	1	11954	11954		76.17	9.7404	1	159010			33738	7581	23520	23597	34153	34153					-0.046901471689125174
RSYSPDHR	8	Unmodified	_RSYSPDHR_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA;TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant;TCEB3|p.N587Tfs*32|1|0.47|ENSG00000011007|chr1:23754240-23754240|A/-|frameshift_variant	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.244140625	2	509.246672	1016.47879	0.19411	9.885E-05	2.0518	0.0010449	2.246	0.0011437	509.24767434116063	27.777	0.75902	27.777	27.494	28.253	0					40	18	3	0	0	0	0.69548	1	9055	9055		34.173	5.023	1	199430			33739	1043	23521	23598	34154	34154					-0.028789396789534294
RSYSSVIEK	9	Unmodified	_RSYSSVIEK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.788330078125	2	534.787838	1067.56112	1.1772	0.00062954	-0.57675	-0.00030844	0.60042	0.0003211	534.7876315772702	21.534	0.21709	21.534	21.475	21.692	0					7	4	3	0	0	0	0.034688	1	7165	7165		104.42	22.183	1	489570			33740	4488	23522	23599	34155	34155					0.030045376093539744
RSYSSVIEK	9	Unmodified	_RSYSSVIEK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7882690429688	2	534.787838	1067.56112	0.70879	0.00037905	-0.027773	-1.4853E-05	0.68102	0.0003642	534.7878134984787	21.548	0.16534	21.548	21.488	21.653	0					8	3	3	0	0	0	0.054723	1	7041	7041		93.598	2.8209	1	736150			33741	4488	23522	23599	34156	34156					0.030045376093539744
RTAADLPLR	9	Unmodified	_RTAADLPLR_					0	0	0		nc|ENSG00000183833|Q7Z4T9-8|CFAP91	nc|ENSG00000183833|Q7Z4T9-8|CFAP91	nc|ENSG00000183833|Q7Z4T9-8|CFAP91	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.79840087890625	2	506.79854	1011.58253	0.097302	4.9313E-05	-0.26843	-0.00013604	-0.17113	-8.6728E-05	506.79837831135967	22.874	0.2289	22.874	22.694	22.923	0					8	5	2	0	0	0	0.25716	1	6882	6882		54.776	10.399	1	91722			33742	11676	23523	23600	34157	34157					0.07719967428704422
RTAHNAIEK	9	Unmodified	_RTAHNAIEK_					0	0	0		nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2860107421875	2	520.285797	1038.55704	1.4268	0.00074236	-0.85765	-0.00044622	0.56919	0.00029614	520.2853210024433	13.342	0.16335	13.342	13.265	13.428	0					6	4	2	0	0	0	0.067603	1	3025	3025		89.029	12.255	1	721240			33743	1489	23524	23601	34158	34158					0.03930492906283689
RTAHNAIEK	9	Unmodified	_RTAHNAIEK_					0	0	0		nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2858276367188	2	520.285797	1038.55704	0.33352	0.00017353	0.20568	0.00010701	0.5392	0.00028054	520.2857413426482	13.314	0.15659	13.314	13.209	13.366	0					7	3	3	0	0	0	0.18282	1	3049	3049		63.694	6.973	1	269530			33744	1489	23524	23601	34159	34159					0.03930492906283689
RTAHNAIEK	9	Unmodified	_RTAHNAIEK_					0	0	0		nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	nc|ENSG00000072310|P36956-3|SREBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.285888671875	2	520.285797	1038.55704	1.6233	0.00084456	-0.97732	-0.00050849	0.64594	0.00033607	520.2853047046798	13.297	0.25028	13.297	13.143	13.393	0					10	5	3	0	0	0	0.064446	1	3063	3063		90.149	13.375	1	513970			33745	1489	23524	23601	34160	34160					0.03930492906283689
RTAQSQLSQS	10	Unmodified	_RTAQSQLSQS_					0	0	0			REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.2838745117188	2	553.283451	1104.55235	0.20178	0.00011164	-1.5417	-0.00085301	-1.3399	-0.00074137	553.2827029877232	24.073	0.64769	24.073	23.734	24.382	0					44	21	3	0	0	0	0.6796	1	7250	7250		24.519	24.519	1	311870	+		33746	20247	23525	23602	34161	34161					0.004255639728853566
RTASFAVRK	9	Unmodified	_RTASFAVRK_					0	0	0		ENST00000474323.5_1_22:44371844-44392260:+|nuORF;ENSG00000100347|ENST00000350028|SAMM50	ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENST00000474323.5_1_22:44371844-44392260:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.8734436035156	3	345.873447	1034.59851	0.39063	0.00013511	-0.27282	-9.4362E-05	0.11781	4.0747E-05	345.8734064527998	17.271	0.10515	17.271	17.203	17.308	0					5	3	2	0	0	0	0.21263	1	4085	4085		58.246	14.595	1	92247			33747	2009	23526	23603	34162	34162					0.08259673665611444
RTASFAVRK	9	Unmodified	_RTASFAVRK_					0	0	0		ENST00000474323.5_1_22:44371844-44392260:+|nuORF;ENSG00000100347|ENST00000350028|SAMM50	ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENST00000474323.5_1_22:44371844-44392260:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.87335205078125	3	345.873447	1034.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.568	1	17.568	17.068	18.068	0								0	0	0	0.029433	1	5240	5240		102.06	36.258	1				33748	2009	23526	23603	34163	34163					0.08259673665611444
RTATIMIQK	9	Unmodified	_RTATIMIQK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.3114013671875	2	531.310426	1060.6063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.173	1	22.173	21.673	22.673	0								0	0	0	0.18541	1	6228	6228		53.089	8.5579	1				33749	5983	23527	23604	34164	34164					0.07842064870851573
RTATIMIQK	9	Unmodified	_RTATIMIQK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.3109130859375	2	531.310426	1060.6063	2.4308	0.0012915	-2.0723	-0.001101	0.35854	0.00019049	531.3095054063712	22.523	0.31343	22.523	22.384	22.698	0					17	7	5	0	0	0	0.024312	1	7318	7318		114.86	18.668	1	2876800			33750	5983	23527	23604	34165	34165					0.07842064870851573
RTATIMIQK	9	Unmodified	_RTATIMIQK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.31103515625	2	531.310426	1060.6063	-0.17772	-9.4422E-05	0.59254	0.00031482	0.41482	0.0002204	531.3109940936939	22.204	0.19904	22.204	22.132	22.331	0					18	6	4	0	0	0	0.037924	1	6491	6491		101.25	5.0622	1	608810			33751	5983	23527	23604	34166	34166					0.07842064870851573
RTATIMIQK	9	Unmodified	_RTATIMIQK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.310791015625	2	531.310426	1060.6063	1.7208	0.00091426	-1.6231	-0.00086236	0.097683	5.19E-05	531.3095322466409	22.409	0.50906	22.409	22.302	22.811	0					19	10	4	0	0	0	0.024312	1	7567	7567		114.86	29.943	1	4068700			33752	5983	23527	23604	34167	34167					0.07842064870851573
RTATIMIQK	9	Unmodified	_RTATIMIQK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.3114624023438	2	531.310426	1060.6063	1.9285	0.0010246	-0.69484	-0.00036918	1.2336	0.00065545	531.3101696060304	22.267	0.23649	22.267	22.17	22.407	0					6	5	2	0	0	0	0.28504	1	6595	6595		51.528	3.8704	1	123030			33753	5983	23527	23604	34168	34168					0.07842064870851573
RTATIMIQK	9	Unmodified	_RTATIMIQK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.3109741210938	2	531.310426	1060.6063	0.7242	0.00038477	-0.010322	-5.4842E-06	0.71388	0.00037929	531.3105376562911	22.396	0.21875	22.396	22.287	22.505	0					10	4	3	0	0	0	0.032181	1	7452	7452		106.88	16.51	1	1608500			33754	5983	23527	23604	34169	34169					0.07842064870851573
RTATIMIQK	9	Unmodified	_RTATIMIQK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.3106689453125	2	531.310426	1060.6063	3.422	0.0018182	-2.5302	-0.0013443	0.89181	0.00047383	531.3088768240855	22.412	0.21781	22.412	22.304	22.521	0					15	4	5	0	0	0	0.017741	1	7438	7438		125.71	29.522	1	3155500			33755	5983	23527	23604	34170	34170					0.07842064870851573
RTAVLDFIE	9	Unmodified	_RTAVLDFIE_					0	0	0		ENSG00000168818|ENST00000306200|STX18;ENST00000512780.2_1_4:4459120-4543730:-|nuORF;ENST00000583091.1_1_17:28395652-28396225:+|nuORF	ENSG00000168818|ENST00000306200|STX18	ENSG00000168818|ENST00000306200|STX18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7940673828125	2	532.292756	1062.57096	1.1542	0.00061439	0.092798	4.9395E-05	1.247	0.00066379	532.29277790308	37.393	0.21108	37.393	37.306	37.517	0					22	10	3	0	0	0	0.1424	1	13378	13378		69.628	12.907	1	283600			33756	6127	23528	23605	34171	34171					0.04217725614716983
RTAVYETY	8	Unmodified	_RTAVYETY_					0	0	0			REV__ENSG00000008086|ENST00000623535|CDKL5	REV__ENSG00000008086|ENST00000623535|CDKL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7482604980469	2	501.748182	1001.48181	-2.0937	-0.0010505	1.3283	0.00066648	-0.76537	-0.00038402	501.74898702253466	31.88	0.22693	31.88	31.806	32.033	0					10	7	2	0	0	0	0.5676	1	11035	11035		53.351	3.3269	1	85311	+		33757	12876	23529	23606	34172	34172					-0.018871093448069587
RTAVYSLHK	9	Unmodified	_RTAVYSLHK_					0	0	0		ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.8732604980469	3	358.873336	1073.59818	-2.0328	-0.00072953	2.2277	0.00079947	0.19487	6.9934E-05	358.874033553093	18.967	0.10571	18.967	18.915	19.021	0					4	2	2	0	0	0	0.2546	1	5068	5068		55.084	9.1117	1	154400			33758	4253	23530	23607	34173	34173					0.0643225394574074
RTAVYSLHK	9	Unmodified	_RTAVYSLHK_					0	0	0		ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8733215332031	3	358.873336	1073.59818	1.283	0.00046045	-1.3174	-0.00047279	-0.034407	-1.2348E-05	358.8728378985394	19.088	0.46152	19.088	19.031	19.492	0					16	9	4	0	0	0	0.12418	1	5850	5850		73.841	6.3475	1	1413000			33759	4253	23530	23607	34174	34174					0.0643225394574074
RTCCLLQQ	8	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))CLLQQ_	RTC(0.977)C(0.023)LLQQ		RTC(16)C(-16)LLQQ		0	1	0			REV__nc|ENSG00000177548|Q9H5N1-2|RABEP2	REV__nc|ENSG00000177548|Q9H5N1-2|RABEP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2484436035156	2	511.249511	1020.48447	-0.23906	-0.00012222	-2.6019	-0.0013302	-2.841	-0.0014524	511.2481552251357	16.425	0.18804	16.425	16.361	16.549	0					7	5	2	0	0	0	0.5676	1	3927	3927		53.351	9.2347	2	489080	+		33760	16699	23531	23608	34175	34175	591				-0.02495300483144547
RTCGEVIVK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))GEVIVK_	RTC(1)GEVIVK		RTC(86)GEVIVK		0	1	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2926635742188	2	531.292233	1060.56991	0.98876	0.00052532	-0.38345	-0.00020373	0.60531	0.0003216	531.2921481440643	19.189	0.31468	19.189	19.132	19.447	0					12	6	3	0	0	0	0.076532	1	6033	6033		85.862	14.566	1	643480			33761	5490	23532	23609	34176	34176	226				0.042051879741620724
RTCIKSLP	8	Unmodified	_RTCIKSLP_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.76611328125	2	459.265487	916.516422	-0.15549	-7.141E-05	-4.0522	-0.0018611	-4.2077	-0.0019325	459.2635673135749	25.657	0.35839	25.657	25.459	25.817	0					21	6	5	0	0	0	0.59773	1	9097	9097		49.442	10.635	1	327060			33762	5457	23533	23610	34177	34177					0.05482435262297258
RTCPITENDKK	11	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))PITENDKK_	RTC(1)PITENDKK		RTC(52)PITENDKK		0	1	0			REV__ENSG00000138347|ENST00000358913|MYPN	REV__ENSG00000138347|ENST00000358913|MYPN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	681.3453369140625	2	681.345726	1360.6769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.325	1	21.325	20.825	21.825	0								0	0	0	0.30435	1	5858	5858		51.528	13.716	1		+		33763	14970	23534	23611	34178	34178	554				0.010986933978529123
RTCTAKRK	8	Unmodified	_RTCTAKRK_					0	0	0			REV__ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant	REV__ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.27923583984375	2	482.27946	962.544368	-1.3125	-0.00063299	0.26505	0.00012783	-1.0474	-0.00050516	482.2795585428306	37.812	0.34365	37.812	37.702	38.046	0					56	19	4	0	0	0	0.62915	1	12755	12755		42.396	0	1	1027200	+		33764	12236	23535	23612	34179	34179					0.061597582423814856
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(77)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	403.8729553222656	3	403.873007	1208.59719	0.61194	0.00024715	-0.53043	-0.00021423	0.081513	3.2921E-05	403.87283325149446	15.882	0.17889	15.882	15.835	16.014	0					11	8	2	0	0	0	0.10928	1	3533	3533		77.288	13.861	1	171260			33765	10177	23536	23613	34180	34180	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(75)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.3068237304688	2	605.305872	1208.59719	1.5695	0.00095003	-0.5676	-0.00034357	1.0019	0.00060646	605.305824174326	15.894	0.088242	15.894	15.835	15.924	0					7	4	2	0	0	0	0.11898	1	3534	3534		75.043	23.851	1	57202			33766	10177	23536	23613	34181	34181	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(120)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.87298583984375	3	403.873007	1208.59719	0.95963	0.00038757	-1.6511	-0.00066684	-0.69149	-0.00027928	403.8724181260779	16.2	0.43956	16.2	16.107	16.546	0					28	10	4	0	0	0	0.024086	1	4335	4335		115.23	42.989	1	3165500			33767	10177	23536	23613	34182	34182	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(75)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.3057861328125	2	605.305872	1208.59719	0.351	0.00021246	-0.70176	-0.00042478	-0.35076	-0.00021232	605.3056656550386	16.2	0.22658	16.2	16.107	16.334	0					13	5	3	0	0	0	0.11898	1	4351	4351		75.043	30.666	1	744330			33768	10177	23536	23613	34183	34183	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(99)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.3060913085938	2	605.305872	1208.59719	-0.47098	-0.00028509	0.4668	0.00028256	-0.0041812	-2.5309E-06	605.3063474690434	16.188	0.18329	16.188	16.135	16.318	0					8	4	3	0	0	0	0.04067	1	4345	4345		98.582	36.475	1	630030			33769	10177	23536	23613	34184	34184	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(62)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	605.306396484375	2	605.305872	1208.59719	-0.60198	-0.00036438	1.7119	0.0010362	1.1099	0.00067183	605.3069292554427	15.908	0.12324	15.908	15.837	15.96	0					11	5	3	0	0	0	0.19952	1	3712	3712		61.691	14.034	1	114880			33770	10177	23536	23613	34185	34185	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(92)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.2075500488281	3	403.873007	1208.59719	-1.3587	-0.00054876	1.792	0.00072376	0.4333	0.000175	404.2079228438782	15.889	0.070632	15.889	15.865	15.936	0					5	3	2	0	0	0	0.058553	1	3713	3713		92.239	47.599	1	110750			33771	10177	23536	23613	34186	34186	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(75)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.3060302734375	2	605.305872	1208.59719	0.72378	0.00043811	-0.66888	-0.00040487	0.054901	3.3232E-05	605.3055304354575	16.171	0.46764	16.171	16.064	16.531	0					20	9	3	0	0	0	0.11898	1	4578	4578		75.043	10.836	1	1466100			33772	10177	23536	23613	34187	34187	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(98)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.8728942871094	3	403.873007	1208.59719	0.99624	0.00040235	-1.5556	-0.00062826	-0.55936	-0.00022591	403.8724399084742	16.171	0.51597	16.171	16.064	16.58	0					20	10	3	0	0	0	0.043448	1	4581	4581		97.597	38.967	1	843310			33773	10177	23536	23613	34188	34188	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(110)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	403.8731384277344	3	403.873007	1208.59719	-0.11607	-4.6879E-05	0.3492	0.00014103	0.23313	9.4153E-05	403.8731670768969	15.975	0.085341	15.975	15.916	16.002	0					9	3	3	0	0	0	0.033932	1	3682	3682		105.17	29.513	1	131580			33774	10177	23536	23613	34189	34189	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(67)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	605.3065185546875	2	605.305872	1208.59719	0.44476	0.00026922	1.001	0.00060589	1.4457	0.00087511	605.3064480711517	15.972	0.12298	15.972	15.916	16.039	0					7	4	2	0	0	0	0.15163	1	3683	3683		67.494	7.3754	1	95151			33775	10177	23536	23613	34190	34190	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(65)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.8728942871094	3	403.873007	1208.59719	-0.58441	-0.00023603	0.21643	8.7411E-05	-0.36798	-0.00014862	403.87314055691036	16.157	0.41952	16.157	16.047	16.466	0					13	8	2	0	0	0	0.16962	1	4426	4426		65.278	23.851	1	502410			33776	10177	23536	23613	34191	34191	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(140)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.87286376953125	3	403.873007	1208.59719	0.59205	0.00023911	-1.0735	-0.00043355	-0.48142	-0.00019443	403.87271412883155	16.14	0.46851	16.14	16.08	16.549	0					21	9	4	0	0	0	0.0095836	1	4417	4417		141.91	64.377	1	2190900			33777	10177	23536	23613	34192	34192	410				0.0012367151452963299
RTCWETTKK	9	Carbamidomethyl (C)	_RTC(Carbamidomethyl (C))WETTKK_	RTC(1)WETTKK		RTC(110)WETTKK		0	1	0		ENST00000504956.5_1_4:87869676-87967907:+|nuORF;ENST00000511442.1_2_4:87869713-87967910:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	ENST00000504956.5_1_4:87869676-87967907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	605.3057861328125	2	605.305872	1208.59719	1.8339	0.0011101	-1.789	-0.0010829	0.044934	2.7199E-05	605.3048482292468	16.14	0.2195	16.14	16.08	16.3	0					12	4	3	0	0	0	0.026848	1	4418	4418		112.11	40.23	1	1293500			33778	10177	23536	23613	34193	34193	410				0.0012367151452963299
RTDCVAGQV	9	Unmodified	_RTDCVAGQV_					0	0	0			REV__RBM48|p.R18G|1|0.21|ENSG00000127993|chr7:92528865-92528865|A/G|missense_variant	REV__RBM48|p.R18G|1|0.21|ENSG00000127993|chr7:92528865-92528865|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7316589355469	2	474.732009	947.449465	0.30249	0.0001436	-1.6596	-0.00078787	-1.3571	-0.00064427	474.73165134421873	21.784	0.52749	21.784	21.653	22.18	0					26	12	5	0	0	0	0.021961	1	6965	6965		118.74	14.686	1	3923500	+		33779	21450	23537	23614	34194	34194					-0.026362200194512297
RTDEAAFQK	9	Unmodified	_RTDEAAFQK_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.2706909179688	2	533.269813	1064.52507	1.0662	0.0005686	0.21001	0.00011199	1.2763	0.00068059	533.2699812591029	17.734	0.11712	17.734	17.662	17.779	0					7	3	3	0	0	0	0.13109	1	4282	4282		72.243	8.036	1	224330			33780	7331	23538	23615	34195	34195					-0.004609195675357114
RTDEAAFQK	9	Unmodified	_RTDEAAFQK_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2699584960938	2	533.269813	1064.52507	2.3305	0.0012428	-1.6688	-0.00088994	0.66169	0.00035286	533.2687120473818	18	0.19973	18	17.942	18.142	0					6	4	2	0	0	0	0.13109	1	5195	5195		72.243	10.552	1	1627300			33781	7331	23538	23615	34196	34196					-0.004609195675357114
RTDEAAFQK	9	Unmodified	_RTDEAAFQK_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2698974609375	2	533.269813	1064.52507	5.0925	0.0027157	-3.365	-0.0017945	1.7275	0.00092121	533.266845529029	17.746	0.11566	17.746	17.666	17.782	0					5	3	2	0	0	0	0.061298	1	4503	4503		91.265	22.478	1	56431			33782	7331	23538	23615	34197	34197					-0.004609195675357114
RTDEAAFQK	9	Unmodified	_RTDEAAFQK_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.27001953125	2	533.269813	1064.52507	1.0953	0.00058409	-0.45237	-0.00024124	0.64292	0.00034285	533.2695613304206	17.962	0.1171	17.962	17.904	18.022	0					8	2	4	0	0	0	0.017741	1	5439	5439		125.71	43.408	1	788170			33783	7331	23538	23615	34198	34198					-0.004609195675357114
RTDGHTLSEK	10	Unmodified	_RTDGHTLSEK_					0	0	0		ENST00000551873.5_1_12:70671967-70723208:+|nuORF;ENST00000549443.5_1_12:70671967-70726591:+|nuORF;ENST00000548021.5_1_12:70671967-70729348:+|nuORF;ENST00000547321.5_1_12:70671967-70723393:+|nuORF;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;CNOT2-GPCPD1|1|fusion;ENST00000551132.5_1_12:70671967-70695499:+|nuORF;ENST00000552483.5_1_12:70671967-70684542:+|nuORF;ENST00000551179.1_1_12:70671967-70672093:+|nuORF;ENST00000552422.5_1_12:70671967-70701491:+|nuORF	ENST00000551873.5_1_12:70671967-70723208:+|nuORF	ENST00000551873.5_1_12:70671967-70723208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.2915649414062	2	572.291276	1142.568	1.7368	0.00099393	-3.9587	-0.0022655	-2.2219	-0.0012716	572.288687593216	14.226	0.2465	14.226	14.144	14.39	0					10	6	2	0	0	0	0.2602	1	3431	3431		72.096	3.2494	1	154070			33784	572	23539	23616	34199	34199					0.002418504899196705
RTDIVFDNL	9	Unmodified	_RTDIVFDNL_					0	0	0			REV__tr|U7T5C6|U7T5C6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00016PE=4SV=1	REV__tr|U7T5C6|U7T5C6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00016PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7880249023438	2	546.787838	1091.56112	1.8576	0.0010157	-0.49318	-0.00026966	1.3644	0.00074603	546.7875207370515	32.434	0.37619	32.434	32.262	32.639	0					20	9	3	0	0	0	0.15558	1	11898	11898		69.628	9.5094	1	428950	+		33785	22178	23540	23617	34200	34200					0.01900537609321873
RTDKPYSAK	9	Unmodified	_RTDKPYSAK_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2879638671875	2	533.288005	1064.56146	2.3153	0.0012347	0.819	0.00043676	3.1343	0.0016715	533.790571690356	13.278	0.23905	13.278	13.189	13.428	0					14	6	4	0	0	0	0.058553	1	2977	2977		85.862	29.141	1	602020			33786	7304	23541	23618	34201	34201					0.031759573291765264
RTDNISFMLK	10	Unmodified	_RTDNISFMLK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.8240356445312	2	612.823898	1223.63324	0.038916	2.3848E-05	-0.13995	-8.5764E-05	-0.10103	-6.1916E-05	612.8239880304767	35.906	0.27731	35.906	35.829	36.106	0					16	7	3	0	0	0	0.011557	1	13496	13496		136.99	60.215	1	192610			33787	5463	23542	23619	34202	34202					0.03037128691403268
RTDNISFMLK	10	Unmodified	_RTDNISFMLK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.3252563476562	2	612.823898	1223.63324	0.95195	0.00058338	-1.2256	-0.00075106	-0.27362	-0.00016768	613.3250703351075	35.888	0.23894	35.888	35.818	36.057	0					16	7	3	0	0	0	0.24329	1	13952	13952		74.165	8.6996	1	137460			33788	5463	23542	23619	34203	34203					0.03037128691403268
RTDNISFMLK	10	Unmodified	_RTDNISFMLK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.8237915039062	2	612.823898	1223.63324	-0.0016962	-1.0395E-06	-0.39085	-0.00023952	-0.39255	-0.00024056	612.8239455421328	35.806	0.3091	35.806	35.687	35.996	0					14	6	3	0	0	0	0.0094828	1	13862	13862		144.77	62.463	1	191140			33789	5463	23542	23619	34204	34204					0.03037128691403268
RTDNISFMLK	10	Unmodified	_RTDNISFMLK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.8245849609375	2	612.823898	1223.63324	1.2813	0.00078521	-2.0104	-0.001232	-0.72906	-0.00044679	612.8229154252679	35.825	0.46276	35.825	35.721	36.183	0					21	9	3	0	0	0	0.0083517	1	13856	13856		150.81	79.994	1	465210			33790	5463	23542	23619	34205	34205					0.03037128691403268
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.2996826171875	2	524.298904	1046.58326	0.71751	0.00037619	0.41109	0.00021554	1.1286	0.00059172	524.2990337789021	13.959	0.14798	13.959	13.89	14.038	0					15	7	3	0	0	0	0.12834	1	2806	2806		56.721	0	1	289750			33791	1272	23543	23620	34206	34206					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.30029296875	2	524.298904	1046.58326	0.092429	4.8461E-05	0.89254	0.00046796	0.98497	0.00051642	524.2993757313087	14.297	0.24353	14.297	14.212	14.456	0					16	6	4	0	0	0	0.032181	1	3443	3443		101.25	101.25	1	3001000			33792	1272	23543	23620	34207	34207					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.8686218261719	3	349.868362	1046.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.984	1	13.984	13.484	14.484	0								0	0	0	0.1568	1	2958	2958		58.246	8.8047	1				33793	1272	23543	23620	34208	34208					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2990112304688	2	524.298904	1046.58326	0.40491	0.00021229	-0.12559	-6.5847E-05	0.27932	0.00014645	524.2987869372994	13.988	0.12648	13.988	13.917	14.044	0					12	6	3	0	0	0	0.061298	1	2953	2953		75.043	2.1641	1	402720			33794	1272	23543	23620	34209	34209					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.8683166503906	3	349.868362	1046.58326	1.4535	0.00050854	-2.9797	-0.0010425	-1.5262	-0.00053397	349.8673545602854	14.237	0.97001	14.237	14.024	14.994	0					34	20	3	0	0	0	0.073657	1	3652	3652		86.882	14.002	1	1351200			33795	1272	23543	23620	34210	34210					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.299072265625	2	524.298904	1046.58326	0.074953	3.9298E-05	0.17768	9.3156E-05	0.25263	0.00013245	524.2990083252964	14.209	0.25635	14.209	14.15	14.406	0					10	5	3	0	0	0	0.0063888	1	3644	3644		148.99	50.357	1	2609200			33796	1272	23543	23620	34211	34211					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.868408203125	3	349.868362	1046.58326	-1.9856	-0.0006947	-0.13989	-4.8942E-05	-2.1255	-0.00074364	349.8682166298309	14.02	0.20618	14.02	13.978	14.184	0					13	9	2	0	0	0	0.13109	1	2909	2909		72.243	13.997	1	91445			33797	1272	23543	23620	34212	34212					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.86883544921875	3	349.868362	1046.58326	1.4724	0.00051516	-0.32975	-0.00011537	1.1427	0.00039979	349.86823576327686	14.197	0.36894	14.197	14.088	14.457	0					13	7	2	0	0	0	0.037098	1	3488	3488		102.06	43.28	1	1453500			33798	1272	23543	23620	34213	34213					0.06182762077764892
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.86834716796875	3	349.868362	1046.58326	3.0356	0.0010621	-4.3822	-0.0015332	-1.3467	-0.00047115	349.8668254649287	14.231	0.86514	14.231	13.88	14.745	0					28	17	3	0	0	0	0.11411	1	3502	3502		76.17	23.081	1	2031900			33799	1272	23543	23620	34214	34214					0.06182762077764892
RTEDHPCQK	9	Unmodified	_RTEDHPCQK_					0	0	0		ENST00000589591.5_1_19:36604659-36605638:-|nuORF;ENSG00000105258|ENST00000221859|POLR2I;ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000589591.5_1_19:36604659-36605638:-|nuORF	ENST00000589591.5_1_19:36604659-36605638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2606811523438	2	557.258922	1112.50329	1.8236	0.0010162	0.80886	0.00045075	2.6325	0.001467	557.2593238590142	11.689	0.13862	11.689	11.612	11.751	0					9	6	2	0	0	0	0.029571	1	2317	2317		109.44	48.467	1	104270			33800	2340	23544	23621	34215	34215					-0.04846047587739122
RTEDHPCQK	9	Unmodified	_RTEDHPCQK_					0	0	0		ENST00000589591.5_1_19:36604659-36605638:-|nuORF;ENSG00000105258|ENST00000221859|POLR2I;ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000589591.5_1_19:36604659-36605638:-|nuORF	ENST00000589591.5_1_19:36604659-36605638:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7608642578125	2	557.258922	1112.50329	3.4948	0.0019475	-2.8102	-0.001566	0.68468	0.00038154	557.7587614243653	11.681	0.16549	11.681	11.601	11.767	0					12	7	3	0	0	0	0.17062	1	2314	2314		65.157	10.435	1	144250			33801	2340	23544	23621	34216	34216					-0.04846047587739122
RTENIDIKK	9	Unmodified	_RTENIDIKK_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.8837890625	3	372.8839	1115.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.637	1	17.637	17.137	18.137	0								0	0	0	0.28211	1	5273	5273		38.714	2.2673	1				33802	5025	23545	23622	34217	34217					0.07668201909041272
RTEPPETGP	9	Unmodified	_RTEPPETGP_					0	0	0		ENST00000488559.6_1_9:130943037-130953136:-|nuORF	ENST00000488559.6_1_9:130943037-130953136:-|nuORF	ENST00000488559.6_1_9:130943037-130953136:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7437744140625	2	492.243264	982.471974	-0.029175	-1.4361E-05	-0.08314	-4.0925E-05	-0.11232	-5.5286E-05	492.2433297613287	26.387	0.1891	26.387	26.289	26.478	0					9	4	3	0	0	0	0.47038	1	8524	8524		35.618	5.1146	1	149020			33803	10048	23546	23623	34218	34218					-0.019962973501719716
RTEQTFILK	9	Unmodified	_RTEQTFILK_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1;RPS6KC1|p.D354N|1|0.26|ENSG00000136643|chr1:213230512-213230512|G/A|missense_variant	nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.D354N|1|0.26|ENSG00000136643|chr1:213230512-213230512|G/A|missense_variant	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.327880859375	2	568.327131	1134.63971	1.7603	0.0010004	-0.3207	-0.00018226	1.4396	0.00081819	568.3268839857302	27.667	0.26174	27.667	27.583	27.845	0					13	6	3	0	0	0	0.43534	1	9703	9703		46.457	6.3986	1	284630			33804	4096;22359	23547	23624	34219	34219					0.07777389914417654
RTEQVEGLPQ	10	Unmodified	_RTEQVEGLPQ_					0	0	0			REV__ENST00000312719.9_1_6:114663491-114664094:-|nuORF	REV__ENST00000312719.9_1_6:114663491-114664094:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.8016357421875	2	578.801477	1155.5884	-0.053763	-3.1118E-05	0.79934	0.00046266	0.74558	0.00043154	578.8018894583377	26.49	0.39573	26.49	26.276	26.671	0					27	9	4	0	0	0	0.04084	1	9112	9112		112.41	0.30369	1	1221300	+		33805	18278	23548	23625	34220	34220					0.016830211497108394
RTETLIPEM	9	Oxidation (M)	_RTETLIPEM(Oxidation (M))_		RTETLIPEM(1)		RTETLIPEM(42)	0	0	1		ENSG00000038427|ENST00000265077|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;nc|ENSG00000038427|P13611-3|VCAN	ENSG00000038427|ENST00000265077|VCAN	ENSG00000038427|ENST00000265077|VCAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.28271484375	2	553.281531	1104.54851	1.821	0.0010075	-0.19157	-0.00010599	1.6294	0.00090151	553.2815399137934	24.316	1.4268	24.316	23.961	25.388	0					65	33	4	0	0	0	0.39215	1	8101	8101		42.396	8.2236	1	1645900			33806	1183	23549	23626	34221	34221		54			0.000417581547935697
RTEWGRVA	8	Unmodified	_RTEWGRVA_					0	0	0		TCERG1L|p.R291W|1|0.35|ENSG00000176769|chr10:131166871-131166871|G/A|missense_variant	TCERG1L|p.R291W|1|0.35|ENSG00000176769|chr10:131166871-131166871|G/A|missense_variant	TCERG1L|p.R291W|1|0.35|ENSG00000176769|chr10:131166871-131166871|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7603759765625	2	487.761958	973.509363	-1.2457	-0.0006076	-1.351	-0.00065895	-2.5967	-0.0012666	487.76123405972953	20.552	0.12899	20.552	20.468	20.597	0					6	4	2	0	0	0	0.68432	1	5755	5755		35.618	1.4457	1	56836			33807	22518	23550	23627	34222	34222					0.021548387060988716
RTFGPAAT	8	Unmodified	_RTFGPAAT_					0	0	0			REV__DQX1|p.L497F|1|0.19|ENSG00000144045|chr2:74522586-74522586|G/A|missense_variant	REV__DQX1|p.L497F|1|0.19|ENSG00000144045|chr2:74522586-74522586|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	410.71929931640625	2	410.719227	819.423902	1.0057	0.00041308	-1.1127	-0.000457	-0.10695	-4.3926E-05	410.7188264787292	32.429	0.2529	32.429	32.342	32.595	0					10	6	2	0	0	0	0.66095	1	11917	11917		39.253	7.298	1	238070	+		33808	12738	23551	23628	34223	34223					0.006966735204173347
RTFGPAAT	8	Unmodified	_RTFGPAAT_					0	0	0			REV__DQX1|p.L497F|1|0.19|ENSG00000144045|chr2:74522586-74522586|G/A|missense_variant	REV__DQX1|p.L497F|1|0.19|ENSG00000144045|chr2:74522586-74522586|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.7190856933594	2	410.719227	819.423902	-0.47595	-0.00019548	0.32461	0.00013333	-0.15133	-6.2155E-05	410.71935832931416	32.379	0.32018	32.379	32.27	32.59	0					10	6	3	0	0	0	0.59773	1	12213	12213		49.442	15.269	1	356090	+		33809	12738	23551	23628	34224	34224					0.006966735204173347
RTFPPGSL	8	Unmodified	_RTFPPGSL_					0	0	0			REV__ENST00000294072.8_2_11:61117452-61117836:-|nuORF	REV__ENST00000294072.8_2_11:61117452-61117836:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7429504394531	2	437.742702	873.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.032	1	32.032	31.532	32.532	0								0	0	0	1.7419	1	11096	11096		44.117	10.601	1		+		33810	18168	23552	23629	34225	34225					0.029055330715777927
RTFSKTIVK	9	Unmodified	_RTFSKTIVK_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;SBF2|p.S1035Y|1|0.43|ENSG00000133812|chr11:9845571-9845571|G/T|missense_variant	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.5570983886719	3	360.557236	1078.64988	0.29383	0.00010594	-1.0051	-0.00036239	-0.71126	-0.00025645	360.5569064214071	18.895	0.11668	18.895	18.834	18.951	0					6	2	3	0	0	0	0.17062	1	5891	5891		65.157	10.381	1	215750			33811	3872	23553	23630	34226	34226					0.11369997639667417
RTFSSQME	8	Unmodified	_RTFSSQME_					0	0	0			REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2239685058594	2	493.224017	984.43348	0.62364	0.00030759	-0.87314	-0.00043065	-0.2495	-0.00012306	493.22377339051235	24.502	0.41753	24.502	24.393	24.811	0					19	8	4	0	0	0	0.50061	1	8596	8596		60.118	1.3363	1	1216200	+		33812	13380	23554	23631	34227	34227					-0.05935926256347557
RTFSYIKNK	9	Unmodified	_RTFSYIKNK_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;ENST00000560957.1_1_15:86225432-86228206:+|nuORF	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.2204895019531	3	386.220624	1155.64004	0.55566	0.00021461	-0.63671	-0.00024591	-0.081048	-3.1302E-05	386.22022135926414	19.936	0.62051	19.936	19.673	20.294	0					16	12	2	0	0	0	0.026848	1	6263	6263		97.597	30.103	1	1003200			33813	6257	23555	23632	34228	34228					0.06844809634276317
RTFTWLVGK	9	Unmodified	_RTFTWLVGK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.31982421875	2	554.319109	1106.62366	0.96761	0.00053636	-0.35528	-0.00019694	0.61232	0.00033942	554.3188572763069	37.861	1.0041	37.861	37.708	38.712	0					39	21	3	0	0	0	0.3269	1	14824	14824		47.96	2.0076	1	983970			33814	7501	23556	23633	34229	34229					0.07461728468183537
RTFVGSLGK	9	Unmodified	_RTFVGSLGK_					0	0	0		ZNF770|p.L495Sfs*10|1|0.15|ENSG00000198146|chr15:34981947-34981951|AATTA/-|frameshift_variant;ENSG00000198146|ENST00000356321|ZNF770	ZNF770|p.L495Sfs*10|1|0.15|ENSG00000198146|chr15:34981947-34981951|AATTA/-|frameshift_variant	ZNF770|p.L495Sfs*10|1|0.15|ENSG00000198146|chr15:34981947-34981951|AATTA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7821960449219	2	482.782359	963.550165	-0.60628	-0.0002927	0.16588	8.0082E-05	-0.4404	-0.00021262	482.78244420960334	24.921	0.15799	24.921	24.821	24.979	0					7	3	3	0	0	0	0.14673	1	8651	8651		68.626	1.1321	1	262580			33815	7534	23557	23634	34230	34230					0.06693180025706624
RTGDGIVQK	9	Unmodified	_RTGDGIVQK_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2747497558594	2	487.274898	972.535243	0.388	0.00018906	-0.79304	-0.00038643	-0.40504	-0.00019737	487.27455279259806	16.599	0.18612	16.599	16.504	16.691	0					12	4	4	0	0	0	0.0080613	1	4540	4540		145.16	15.473	1	776710			33816	11586	23558	23635	34231	34231					0.04787688157705361
RTGDGIVQK	9	Unmodified	_RTGDGIVQK_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2746276855469	2	487.274898	972.535243	-0.083324	-4.0602E-05	-0.58622	-0.00028565	-0.66955	-0.00032625	487.27466508410544	16.539	0.21578	16.539	16.48	16.696	0					9	4	3	0	0	0	0.02953	1	4754	4754		109.48	10.849	1	1803200			33817	11586	23558	23635	34232	34232					0.04787688157705361
RTGGFLQLLI	10	Unmodified	_RTGGFLQLLI_					0	0	0			REV__MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	REV__MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3397827148438	2	559.340041	1116.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.763	1	11.763	11.263	12.263	0								0	0	0	0.19992	1	2335	2335		64.207	5.4253	1		+		33818	13734	23559	23636	34233	34233					0.11186284156724469
RTGGLTCVAA	10	Carbamidomethyl (C)	_RTGGLTC(Carbamidomethyl (C))VAA_	RTGGLTC(1)VAA		RTGGLTC(41)VAA		0	1	0			REV__ENSG00000107187|ENST00000371748|LHX3	REV__ENSG00000107187|ENST00000371748|LHX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2598876953125	2	503.260933	1004.50731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.429	1	24.429	23.929	24.929	0								0	0	0	0.3639	1	7615	7615		40.778	6.6056	1		+		33819	13847	23560	23637	34234	34234	525				0.0052404190596462286
RTGKPIAVK	9	Unmodified	_RTGKPIAVK_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant;CSDE1|p.D560Gfs*6|1|0.3|ENSG00000009307|chr1:114725295-114725296|-/C|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.3139953613281	2	485.313826	968.613099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.021	1	15.021	14.521	15.521	0								0	0	0	0.31222	1	3790	3790		19.104	2.6304	1				33820	1024	23561	23638	34235	34235					0.12753745813756723
RTGKPIAVK	9	Unmodified	_RTGKPIAVK_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant;CSDE1|p.D560Gfs*6|1|0.3|ENSG00000009307|chr1:114725295-114725296|-/C|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.3136291503906	2	485.313826	968.613099	-0.090995	-4.4161E-05	-0.40486	-0.00019648	-0.49585	-0.00024064	485.31356690591537	15.003	0.16846	15.003	14.893	15.062	0					8	3	3	0	0	0	0.17062	1	4003	4003		58.23	6.8945	1	276570			33821	1024	23561	23638	34236	34236					0.12753745813756723
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.8732604980469	3	339.873224	1016.59784	0.22353	7.5972E-05	-0.28788	-9.7843E-05	-0.064351	-2.1871E-05	339.8730880033168	13.717	0.093472	13.717	13.657	13.751	0					11	5	3	0	0	0	0.2546	1	2717	2717		62.166	0	1	94142			33822	6707	23562	23639	34237	34237					0.09020834225907493
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.3058776855469	2	509.306198	1016.59784	1.0854	0.00055279	-1.0131	-0.000516	0.07222	3.6782E-05	509.30559053978084	14.038	0.18295	14.038	13.949	14.132	0					12	4	4	0	0	0	0.022698	1	3322	3322		117.53	15.925	1	1473300			33823	6707	23562	23639	34238	34238					0.09020834225907493
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.3056335449219	2	509.306198	1016.59784	0.92994	0.00047362	-0.19729	-0.00010048	0.73265	0.00037314	509.30614886540883	14.021	0.33677	14.021	13.936	14.273	0					13	8	2	0	0	0	0.032181	1	3320	3320		106.88	5.2795	1	2994500			33824	6707	23562	23639	34239	34239					0.09020834225907493
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.8731689453125	3	339.873224	1016.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.023	1	14.023	13.523	14.523	0								0	0	0	0.1347	1	3326	3326		79.07	18.952	1				33825	6707	23562	23639	34240	34240					0.09020834225907493
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.30657958984375	2	509.306198	1016.59784	0.62471	0.00031817	0.644	0.00032799	1.2687	0.00064616	509.3063735354293	13.781	0.13526	13.781	13.712	13.847	0					15	7	3	0	0	0	0.032181	1	2811	2811		106.88	11.065	1	270190			33826	6707	23562	23639	34241	34241					0.09020834225907493
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.8077697753906	2	509.306198	1016.59784	-0.042982	-2.1891E-05	0.11067	5.6363E-05	0.067684	3.4472E-05	509.3063213641563	13.969	0.3593	13.969	13.863	14.222	0					15	7	3	0	0	0	0.032383	1	3358	3358		106.68	5.0824	1	3704000			33827	6707	23562	23639	34242	34242					0.09020834225907493
RTGPACMPTK	10	Carbamidomethyl (C)	_RTGPAC(Carbamidomethyl (C))MPTK_	RTGPAC(1)MPTK		RTGPAC(70)MPTK		0	1	0		ENST00000311604.7_1_11:1902696-1904704:+|nuORF;LSP1|p.Q108Sfs*31|3|0.4|ENSG00000130592|chr11:1881556-1881556|C/-|frameshift_variant	ENST00000311604.7_1_11:1902696-1904704:+|nuORF	ENST00000311604.7_1_11:1902696-1904704:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.7760620117188	2	559.775893	1117.53723	1.7964	0.0010056	-1.6746	-0.00093741	0.12176	6.8158E-05	559.7751263852191	18.604	0.18189	18.604	18.473	18.655	0					11	4	3	0	0	0	0.27406	1	5488	5488		70.399	13.965	1	243650			33828	8557	23563	23640	34243	34243	372				-0.016833424203696268
RTGPPMGSR	9	Unmodified	_RTGPPMGSR_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7481384277344	2	479.747993	957.481433	0.027476	1.3182E-05	0.030739	1.4747E-05	0.058215	2.7929E-05	479.7479916631103	15.988	0.21	15.988	15.835	16.045	0					14	9	2	0	0	0	0.27123	1	3551	3551		53.089	14.283	1	76013			33829	2453	23564	23641	34244	34244					0.000991924543541245
RTGPPMGSR	9	Unmodified	_RTGPPMGSR_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7479553222656	2	479.747993	957.481433	0.48085	0.00023069	-1.2196	-0.00058511	-0.73878	-0.00035443	479.7475103273992	16.278	0.64921	16.278	15.897	16.546	0					33	15	3	0	0	0	0.22823	1	4334	4334		58.246	14.129	1	888280			33830	2453	23564	23641	34245	34245					0.000991924543541245
RTGPPMGSR	9	Unmodified	_RTGPPMGSR_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7478942871094	2	479.747993	957.481433	-0.65322	-0.00031338	-0.26269	-0.00012603	-0.91592	-0.00043941	479.748031847521	16.208	0.61778	16.208	15.849	16.466	0					28	12	3	0	0	0	0.3269	1	4359	4359		47.96	0.30219	1	1215300			33831	2453	23564	23641	34246	34246					0.000991924543541245
RTGPPMGSRF	10	Unmodified	_RTGPPMGSRF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.282470703125	2	553.2822	1104.54985	1.6107	0.00089119	-1.12	-0.00061968	0.49071	0.0002715	553.2818079201447	24.276	1.11	24.276	23.847	24.957	0					65	22	4	0	0	0	0.23114	1	8431	8431		75.652	29.195	1	1738800			33832	2453	23565	23642	34247	34247					0.0017543703420415113
RTGPPMGSRF	10	Unmodified	_RTGPPMGSRF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.28271484375	2	553.2822	1104.54985	1.8194	0.0010067	-1.2815	-0.00070904	0.53793	0.00029763	553.2816683910416	24.268	1.0997	24.268	23.863	24.963	0					61	22	4	0	0	0	0.24329	1	8266	8266		74.165	33.387	1	2225700			33833	2453	23565	23642	34248	34248					0.0017543703420415113
RTGPSMRER	9	Oxidation (M)	_RTGPSM(Oxidation (M))RER_		RTGPSM(1)RER		RTGPSM(60)RER	0	0	1			REV__ENST00000440884.7_1_14:103852062-103852221:+|nuORF	REV__ENST00000440884.7_1_14:103852062-103852221:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2827758789062	2	553.280189	1104.54582	3.6374	0.0020125	0.51415	0.00028447	4.1515	0.002297	553.2805422783209	24.257	1.1024	24.257	23.796	24.899	0					50	22	4	0	0	0	0.21263	1	8305	8305		60.118	10.582	1	1416900	+		33834	19232	23566	23643	34249	34249		708			-0.0022665245951429824
RTGPWVWG	8	Unmodified	_RTGPWVWG_					0	0	0			REV__ENST00000586443.1_1_17:42429890-42430163:+|nuORF	REV__ENST00000586443.1_1_17:42429890-42430163:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7478942871094	2	479.748319	957.482085	0.46445	0.00022282	-1.371	-0.00065772	-0.90653	-0.0004349	479.7476473796376	16.294	0.48945	16.294	15.949	16.438	0					23	11	3	0	0	0	0.46905	1	4320	4320		63.306	6.674	1	305010	+		33835	20483	23567	23644	34250	34250					0.001643551657025455
RTGRITVEK	9	Unmodified	_RTGRITVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.880615234375	3	353.88049	1058.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.796	1	15.796	15.296	16.296	0								0	0	0	0.29774	1	3671	3671		51.193	15.574	1				33836	6707	23568	23645	34251	34251					0.09267638974461079
RTGRITVEK	9	Unmodified	_RTGRITVEK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.3171997070312	2	530.317097	1058.61964	3.4363	0.0018223	-2.6989	-0.0014313	0.7374	0.00039106	530.3157401973533	16.022	0.41911	16.022	15.815	16.234	0					23	8	4	0	0	0	0.21419	1	4362	4362		59.931	5.1545	1	3807000			33837	6707	23568	23645	34252	34252					0.09267638974461079
RTGRTKFNI	9	Unmodified	_RTGRTKFNI_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|93|2|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|93|2|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|93|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.8154907226562	2	546.817264	1091.61998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.407	1	33.407	32.907	33.907	0								0	0	0	0.3119	1	12784	12784		32.812	2.3088	1				33838	11194	23569	23646	34253	34253					0.0778305869430369
RTGSGKNL	8	Unmodified	_RTGSGKNL_					0	0	0		ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.73724365234375	2	416.735409	831.456264	2.7544	0.0011479	1.2561	0.00052345	4.0105	0.0016713	416.7359413605282	29.87	0.51544	29.87	29.664	30.18	0					23	10	4	0	0	0	0.73426	1	10980	10980		29.15	29.15	1	1203000			33839	5662	23570	23647	34254	34254					0.03379460923406441
RTGSVSVHK	9	Unmodified	_RTGSVSVHK_					0	0	0		ENST00000445792.7_1_X:305849-322301:-|nuORF;ENSG00000167393|ENST00000390665|PPP2R3B	ENST00000445792.7_1_X:305849-322301:-|nuORF	ENST00000445792.7_1_X:305849-322301:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.1856689453125	3	324.185802	969.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.628	1	13.628	13.128	14.128	0								0	0	0	0.26817	1	3360	3360		41.08	11.931	1				33840	9614	23571	23648	34255	34255					0.04959107877573388
RTGWSSRW	8	Unmodified	_RTGWSSRW_					0	0	0		ENST00000565263.5_1_16:68087487-68090268:+|nuORF	ENST00000565263.5_1_16:68087487-68090268:+|nuORF	ENST00000565263.5_1_16:68087487-68090268:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2577514648438	2	518.259582	1034.50461	-1.4163	-0.00073403	-2.5042	-0.0012978	-3.9205	-0.0020318	518.2588063219772	15.946	0.10537	15.946	15.887	15.992	0					7	4	2	0	0	0	0.69548	1	3679	3679		34.173	0.65696	1	35813			33841	10750	23572	23649	34256	34256					-0.011260454366720296
RTHEHVSEK	9	Unmodified	_RTHEHVSEK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF;ENST00000515160.5_1_5:95998126-96031662:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.859619140625	3	374.859866	1121.55777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.68	1	11.68	11.18	12.18	0								0	0	0	0.2595	1	2300	2300		42.338	3.5845	1				33842	5038	23573	23650	34257	34257					0.0018528755533679941
RTHEHVSEK	9	Unmodified	_RTHEHVSEK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF;ENST00000515160.5_1_5:95998126-96031662:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2882080078125	2	561.786161	1121.55777	0.47111	0.00026467	0.80301	0.00045112	1.2741	0.00071578	562.2880818255538	11.651	0.086836	11.651	11.625	11.712	0					5	3	2	0	0	0	0.0095952	1	2293	2293		125.68	42.932	1	157690			33843	5038	23573	23650	34258	34258					0.0018528755533679941
RTHEHVSEK	9	Unmodified	_RTHEHVSEK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF;ENST00000515160.5_1_5:95998126-96031662:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.786865234375	2	561.786161	1121.55777	3.47	0.0019494	-1.7448	-0.00098021	1.7252	0.00096918	561.7850305178846	11.659	0.14154	11.659	11.601	11.743	0					10	6	3	0	0	0	0.0074977	1	2306	2306		120.27	27.129	1	211650			33844	5038	23573	23650	34259	34259					0.0018528755533679941
RTHGSNIAK	9	Unmodified	_RTHGSNIAK_					0	0	0		ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.272216796875	2	492.27269	982.530826	0.5843	0.00028763	-1.5604	-0.00076813	-0.97608	-0.0004805	492.2720383092271	12.198	0.30111	12.198	12.097	12.398	0					12	7	3	0	0	0	0.070127	1	2694	2694		72.243	11.271	1	294270			33845	4523	23574	23651	34260	34260					0.038862237347984774
RTHIKCHQI	9	Unmodified	_RTHIKCHQI_					0	0	0			REV__ENST00000427606.2_1_8:146202527-146219907:-|nuORF	REV__ENST00000427606.2_1_8:146202527-146219907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.5439147949219	3	379.209953	1134.60803	0.54492	0.00020664	-1.2089	-0.00045843	-0.66399	-0.00025179	379.5438417046819	37.359	0.34371	37.359	37.191	37.535	0					15	10	2	0	0	0	0.4966	1	14603	14603		32.812	1.2826	1	113180	+		33846	19114	23575	23652	34261	34261					0.04611118679486026
RTHMGQEPQ	9	Oxidation (M)	_RTHM(Oxidation (M))GQEPQ_		RTHM(1)GQEPQ		RTHM(44)GQEPQ	0	0	1		ENST00000416109.2_1_12:7507704-7520763:-|nuORF	ENST00000416109.2_1_12:7507704-7520763:-|nuORF	ENST00000416109.2_1_12:7507704-7520763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.812255859375	2	550.251097	1098.48764	0.59125	0.00032533	1.424	0.00078357	2.0153	0.0011089	550.2518391143112	15.468	0.14892	15.468	15.364	15.513	0					6	3	2	0	0	0	0.36892	1	4074	4074		44.377	12.422	1	142010			33847	9353	23576	23653	34262	34262		376			-0.05766334104805537
RTHQQAPLK	9	Unmodified	_RTHQQAPLK_					0	0	0		ENST00000540497.5_3_20:45938819-45938885:-|nuORF	ENST00000540497.5_3_20:45938819-45938885:-|nuORF	ENST00000540497.5_3_20:45938819-45938885:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.2085266113281	3	360.208718	1077.60433	0.48247	0.00017379	-0.7164	-0.00025805	-0.23393	-8.4264E-05	360.2083932714398	14.011	0.13903	14.011	13.965	14.104	0					5	3	2	0	0	0	0.095583	1	3331	3331		80.455	20.336	1	354640			33848	10534	23577	23654	34263	34263					0.06862772177260013
RTIAPIIGR	9	Unmodified	_RTIAPIIGR_					0	0	0		CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.820068359375	2	498.819276	995.623999	1.5583	0.00077729	-0.81276	-0.00040542	0.7455	0.00037187	498.8188302608588	26.959	0.22773	26.959	26.86	27.087	0					13	7	3	0	0	0	0.098791	1	8233	8233		79.713	18.741	1	345770			33849	440	23578	23655	34264	34264					0.1260114818803686
RTIAPIIGR	9	Unmodified	_RTIAPIIGR_					0	0	0		CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.8188781738281	2	498.819276	995.623999	0.57312	0.00028588	-1.1154	-0.00055639	-0.54229	-0.0002705	498.8187374700598	27.188	0.5946	27.188	27.097	27.692	0					28	14	4	0	0	0	0.021015	1	9477	9477		120.31	29.936	1	3130500			33850	440	23578	23655	34265	34265					0.1260114818803686
RTIAPIIGR	9	Unmodified	_RTIAPIIGR_					0	0	0		CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.8818664550781	3	332.881943	995.623999	0.5405	0.00017992	-0.67874	-0.00022594	-0.13824	-4.6019E-05	332.8817218965945	27.195	0.41754	27.195	27.089	27.506	0					20	8	5	0	0	0	0.47473	1	9815	9815		50.034	9.9753	1	1765400			33851	440	23578	23655	34266	34266					0.1260114818803686
RTIDRSVFK	9	Unmodified	_RTIDRSVFK_					0	0	0		nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155;ENST00000507233.1_1_5:37342606-37350289:-|nuORF;NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	nc|ENSG00000113569|O75694-2|NUP155	nc|ENSG00000113569|O75694-2|NUP155	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.5523376464844	3	374.552374	1120.63529	0.79497	0.00029776	-0.89272	-0.00033437	-0.097743	-3.661E-05	374.5519948773239	21.949	0.17983	21.949	21.837	22.017	0					6	4	2	0	0	0	0.34452	1	7060	7060		46.457	12.284	1	76989			33852	2809	23579	23656	34267	34267					0.07979925491508766
RTILSSTPVL	10	Unmodified	_RTILSSTPVL_					0	0	0		nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8269653320312	2	543.829506	1085.64446	1.1597	0.00063069	-1.9653	-0.0010688	-0.80557	-0.0004381	543.8282817077352	18.158	0.19619	18.158	17.988	18.184	0					9	6	2	0	0	0	0.44601	1	4464	4464		51.193	1.6567	1	109640			33853	6193	23580	23657	34268	34268					0.10506274057183873
RTIQTFVKK	9	Unmodified	_RTIQTFVKK_					0	0	0		PHF23|p.P112Qfs*20|1|0.43|ENSG00000040633|chr17:7236592-7236592|G/-|frameshift_variant;nc|ENSG00000040633|Q9BUL5-2|PHF23;PHF23|p.P161Lfs*63|1|0.55|ENSG00000040633|chr17:7236445-7236445|G/-|frameshift_variant;PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant;PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	PHF23|p.P112Qfs*20|1|0.43|ENSG00000040633|chr17:7236592-7236592|G/-|frameshift_variant	PHF23|p.P112Qfs*20|1|0.43|ENSG00000040633|chr17:7236592-7236592|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.2326965332031	3	374.232752	1119.67643	0.24614	9.2114E-05	-0.51462	-0.00019259	-0.26848	-0.00010047	374.2326028488455	20.088	0.26812	20.088	19.978	20.246	0					11	5	3	0	0	0	0.090954	1	6447	6447		81.525	17.318	1	597380			33854	1192	23581	23658	34269	34269					0.12137686530991232
RTISSDAVLQR	11	Unmodified	_RTISSDAVLQR_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	623.349609375	2	623.349126	1244.6837	-0.69077	-0.00043059	0.91743	0.00057188	0.22666	0.00014129	623.3498384438058	24.652	0.12734	24.652	24.585	24.712	0					9	4	3	0	0	0	0.37697	1	7580	7580		68.626	19.09	1	130080			33855	1511	23582	23659	34270	34270					0.07114374340744689
RTITSKPSA	9	Unmodified	_RTITSKPSA_					0	0	0		ENST00000481424.5_1_7:99214612-99216222:+|nuORF;ENST00000431485.2_3_7:99215826-99216222:+|nuORF	ENST00000481424.5_1_7:99214612-99216222:+|nuORF	ENST00000481424.5_1_7:99214612-99216222:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.25091552734375	2	480.777274	959.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.466	1	15.466	14.966	15.966	0								0	0	0	0.1633	1	4000	4000		56.721	1.2168	1				33856	9957	23583	23660	34271	34271					0.058605723004689025
RTKATVELK	9	Unmodified	_RTKATVELK_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.321533203125	2	523.321848	1044.62914	1.0362	0.00054225	-0.60261	-0.00031536	0.43357	0.00022689	523.3212630705564	23.522	0.11634	23.522	23.462	23.578	0					4	2	2	0	0	0	0.25716	1	8128	8128		54.776	3.4409	1	143610			33857	1639	23584	23661	34272	34272					0.10861407259972111
RTKEKMSIK	9	Unmodified	_RTKEKMSIK_					0	0	0		ENST00000463966.5_1_3:109047772-109056364:-|nuORF;ENSG00000121570|ENST00000335658|DPPA4	ENST00000463966.5_1_3:109047772-109056364:-|nuORF	ENST00000463966.5_1_3:109047772-109056364:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.2205810546875	3	374.221748	1119.64341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.663	1	19.663	19.163	20.163	0								0	0	0	0.051298	1	6254	6254		85.862	5.4072	1				33858	3227	23585	23662	34273	34273					0.08837736416626285
RTKEKMSIK	9	Unmodified	_RTKEKMSIK_					0	0	0		ENST00000463966.5_1_3:109047772-109056364:-|nuORF;ENSG00000121570|ENST00000335658|DPPA4	ENST00000463966.5_1_3:109047772-109056364:-|nuORF	ENST00000463966.5_1_3:109047772-109056364:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.2204895019531	3	374.221748	1119.64341	-0.34357	-0.00012857	-2.4701	-0.00092435	-2.8136	-0.0010529	374.2208489759084	19.648	0.1657	19.648	19.541	19.706	0					5	3	2	0	0	0	0.54081	1	6123	6123		28.081	0	1	342620			33859	3227	23585	23662	34274	34274					0.08837736416626285
RTKGLFWK	8	Unmodified	_RTKGLFWK_					0	0	0			REV__ENST00000495826.5_1_22:20094146-20094794:+|nuORF	REV__ENST00000495826.5_1_22:20094146-20094794:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.3075561523438	2	518.308544	1034.60253	0.10981	5.6918E-05	-2.9294	-0.0015183	-2.8196	-0.0014614	518.3071032042213	17.312	0.14962	17.312	17.247	17.396	0					9	5	3	0	0	0	0.70598	1	4318	4318		16.473	0	1	128360	+		33860	19765	23586	23663	34275	34275					0.08661763159307156
RTKHCRLI	8	Unmodified	_RTKHCRLI_					0	0	0		ENST00000264668.6_1_5:7873570-7875415:+|nuORF	ENST00000264668.6_1_5:7873570-7875415:+|nuORF	ENST00000264668.6_1_5:7873570-7875415:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.8037109375	2	513.803103	1025.59165	0.017502	8.9927E-06	1.1758	0.00060413	1.1933	0.00061312	513.8037791421001	11.852	1.4033	11.852	11.786	13.189	0					88	44	4	0	0	0	0.6282	1	2360	2360		44.531	14.027	1	4648100			33861	8334	23587	23664	34276	34276					0.07988037513382551
RTKQYSNT	8	Unmodified	_RTKQYSNT_					0	0	0		nc|ENSG00000005483|Q8IZD2-6|KMT2E	nc|ENSG00000005483|Q8IZD2-6|KMT2E	nc|ENSG00000005483|Q8IZD2-6|KMT2E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.17340087890625	3	333.173562	996.498858	1.6363	0.00054517	-1.9933	-0.0006641	-0.35696	-0.00011893	333.1728969216526	13.15	0.16213	13.15	13.095	13.258	0					8	3	3	0	0	0	0.77246	1	2992	2992		19.997	3.2794	1	1206400			33862	11411	23588	23665	34277	34277					0.0004681126099512767
RTKREAGP	8	Unmodified	_RTKREAGP_					0	0	0			REV__ENST00000340802.10_1_12:48499829-48501164:+|nuORF	REV__ENST00000340802.10_1_12:48499829-48501164:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7619323730469	2	457.761958	913.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.792	1	14.792	14.292	15.292	0								0	0	0	1.7419	1	3106	3106		29.15	0	1		+		33863	18446	23589	23666	34278	34278					0.04914838706088176
RTKSVDALK	9	Unmodified	_RTKSVDALK_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3060607910156	2	509.306198	1016.59784	0.22746	0.00011585	0.05406	2.7533E-05	0.28152	0.00014338	509.3061479113189	15.795	0.25947	15.795	15.736	15.996	0					10	5	3	0	0	0	0.078509	1	4400	4400		85.161	25.043	1	208900			33864	2095	23590	23667	34279	34279					0.09020834225884755
RTKSVDALK	9	Unmodified	_RTKSVDALK_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.30645751953125	2	509.306198	1016.59784	-0.046097	-2.3478E-05	0.036648	1.8665E-05	-0.0094494	-4.8126E-06	509.3063049653061	15.823	0.16607	15.823	15.747	15.913	0					6	3	2	0	0	0	0.16806	1	4260	4260		65.465	3.7741	1	199880			33865	2095	23590	23667	34280	34280					0.09020834225884755
RTKTDYMTITY	11	Oxidation (M)	_RTKTDYM(Oxidation (M))TITY_		RTKTDYM(1)TITY		RTKTDYM(44)TITY	0	0	1			REV__ENST00000579249.1_1_17:62145505-62149428:-|nuORF	REV__ENST00000579249.1_1_17:62145505-62149428:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	704.8446044921875	2	704.842484	1407.67042	2.2646	0.0015962	0.55641	0.00039218	2.821	0.0019883	704.8429135653481	23.949	0.26642	23.949	23.745	24.012	0					17	5	4	0	0	0	0.49805	1	8313	8313		44.377	10.456	1	635010	+		33866	16737	23591	23668	34281	34281		639			-0.017112445535076404
RTKTSHNL	8	Unmodified	_RTKTSHNL_					0	0	0		ENST00000476125.5_1_3:181427643-181427781:+|nuORF	ENST00000476125.5_1_3:181427643-181427781:+|nuORF	ENST00000476125.5_1_3:181427643-181427781:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7669982910156	2	478.76724	955.519927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.986	1	12.986	12.486	13.486	0								0	0	0	1.7419	1	2513	2513		37.159	8.0096	1				33867	9904	23592	23669	34282	34282					0.04038821360506972
RTLDLTYRK	9	Unmodified	_RTLDLTYRK_					0	0	0		ENST00000369183.8_1_10:120095785-120095896:-|nuORF	ENST00000369183.8_1_10:120095785-120095896:-|nuORF	ENST00000369183.8_1_10:120095785-120095896:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.2276916503906	3	389.227779	1164.66151	0.2378	9.2557E-05	-0.6398	-0.00024903	-0.40201	-0.00015647	389.2275853813157	22.853	0.46883	22.853	22.744	23.212	0					24	9	4	0	0	0	0.043448	1	7806	7806		97.597	19.333	1	2192600			33868	8938	23593	23670	34283	34283					0.08576194662964554
RTLDLTYRK	9	Unmodified	_RTLDLTYRK_					0	0	0		ENST00000369183.8_1_10:120095785-120095896:-|nuORF	ENST00000369183.8_1_10:120095785-120095896:-|nuORF	ENST00000369183.8_1_10:120095785-120095896:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.2279052734375	3	389.227779	1164.66151	0.50654	0.00019716	-0.68765	-0.00026765	-0.18111	-7.0493E-05	389.22756129880105	22.88	0.76358	22.88	22.772	23.535	0					32	15	4	0	0	0	0.12418	1	7667	7667		73.841	4.995	1	2210800			33869	8938	23593	23670	34284	34284					0.08576194662964554
RTLDSVLKK	9	Unmodified	_RTLDSVLKK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.8889465332031	3	353.888874	1058.64479	0.8905	0.00031514	-0.46412	-0.00016425	0.42638	0.00015089	353.8886646258919	22.083	0.10492	22.083	22.001	22.106	0					4	2	2	0	0	0	0.18282	1	7116	7116		63.694	2.0028	1	74351			33870	6474	23594	23671	34285	34285					0.11781693777038527
RTLDSVLKK	9	Unmodified	_RTLDSVLKK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.8887939453125	3	353.888874	1058.64479	0.31699	0.00011218	-0.50407	-0.00017839	-0.18708	-6.6206E-05	353.88866379730194	21.936	0.16332	21.936	21.874	22.037	0					8	3	3	0	0	0	0.064446	1	7363	7363		90.149	15.984	1	547890			33871	6474	23594	23671	34286	34286					0.11781693777038527
RTLDSVLKK	9	Unmodified	_RTLDSVLKK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.8887023925781	3	353.888874	1058.64479	-0.052497	-1.8578E-05	-0.18249	-6.4583E-05	-0.23499	-8.3161E-05	353.8887446561726	21.945	0.21797	21.945	21.887	22.105	0					8	4	3	0	0	0	0.10928	1	7240	7240		77.288	12.131	1	747510			33872	6474	23594	23671	34287	34287					0.11781693777038527
RTLEPLAKK	9	Unmodified	_RTLEPLAKK_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.55712890625	3	352.557236	1054.64988	0.89649	0.00031607	-1.2472	-0.00043971	-0.35069	-0.00012364	352.55680247220295	18.361	0.14601	18.361	18.27	18.416	0					7	3	3	0	0	0	0.073657	1	5367	5367		86.882	7.169	1	720520			33873	7841	23595	23672	34288	34288					0.12473997639631307
RTLEPLAKK	9	Unmodified	_RTLEPLAKK_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.55718994140625	3	352.557236	1054.64988	0.32153	0.00011336	-0.4432	-0.00015625	-0.12167	-4.2894E-05	352.5570702809068	18.318	0.21989	18.318	18.207	18.427	0					11	4	3	0	0	0	0.026656	1	5611	5611		112.3	13.713	1	3476000			33874	7841	23595	23672	34289	34289					0.12473997639631307
RTLEPLAKK	9	Unmodified	_RTLEPLAKK_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.5572204589844	3	352.557236	1054.64988	-0.049694	-1.752E-05	0.22035	7.7685E-05	0.17065	6.0165E-05	352.5573166032935	18.323	0.21501	18.323	18.223	18.438	0					10	4	3	0	0	0	0.16962	1	5452	5452		65.278	16.676	1	1490100			33875	7841	23595	23672	34290	34290					0.12473997639631307
RTLGMSVG	8	Unmodified	_RTLGMSVG_					0	0	0			REV__nc|ENSG00000163938|Q9BVP2-2|GNL3	REV__nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	410.71905517578125	2	410.720913	819.427273	-0.084618	-3.4754E-05	-4.1133	-0.0016894	-4.1979	-0.0017242	410.71921474248	32.21	0.14148	32.21	32.108	32.25	0					6	4	2	0	0	0	0.64096	1	11187	11187		42.474	1.9018	1	40382	+		33876	15939	23596	23673	34291	34291					0.01033600302787363
RTLGSDSVILK	11	Unmodified	_RTLGSDSVILK_					0	0	0		ENST00000509320.5_1_14:73404720-73412622:+|nuORF	ENST00000509320.5_1_14:73404720-73412622:+|nuORF	ENST00000509320.5_1_14:73404720-73412622:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.8511352539062	2	594.85097	1187.68739	0.78844	0.000469	-0.36862	-0.00021927	0.41982	0.00024973	594.8506800617841	28.213	0.18154	28.213	28.121	28.303	0					10	4	3	0	0	0	0.11154	1	9957	9957		86.882	10.712	1	426940			33877	10223	23597	23674	34292	34292					0.10105044114607153
RTLGSDSVILK	11	Unmodified	_RTLGSDSVILK_					0	0	0		ENST00000509320.5_1_14:73404720-73412622:+|nuORF	ENST00000509320.5_1_14:73404720-73412622:+|nuORF	ENST00000509320.5_1_14:73404720-73412622:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.8512573242188	2	594.85097	1187.68739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.072	1	28.072	27.572	28.572	0								0	0	0	0.45674	1	9268	9268		20.837	0.84038	1				33878	10223	23597	23674	34293	34293					0.10105044114607153
RTLGSDSVILK	11	Unmodified	_RTLGSDSVILK_					0	0	0		ENST00000509320.5_1_14:73404720-73412622:+|nuORF	ENST00000509320.5_1_14:73404720-73412622:+|nuORF	ENST00000509320.5_1_14:73404720-73412622:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8512573242188	2	594.85097	1187.68739	0.072818	4.3316E-05	0.16089	9.5706E-05	0.23371	0.00013902	594.8511024488527	28.169	0.21859	28.169	28.059	28.277	0					9	4	3	0	0	0	0.056425	1	10161	10161		102.06	13.885	1	440380			33879	10223	23597	23674	34294	34294					0.10105044114607153
RTLHTEEL	8	Unmodified	_RTLHTEEL_					0	0	0		L1TD1|p.Q683Hfs*3|1|0.25|ENSG00000240563|chr1:62210822-62210823|AG/-|frameshift_variant;ENSG00000240563|ENST00000498273|L1TD1	L1TD1|p.Q683Hfs*3|1|0.25|ENSG00000240563|chr1:62210822-62210823|AG/-|frameshift_variant	L1TD1|p.Q683Hfs*3|1|0.25|ENSG00000240563|chr1:62210822-62210823|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7687072753906	2	499.766906	997.519259	-0.68257	-0.00034113	3.793	0.0018956	3.1105	0.0015545	499.7692338125705	31.194	0.30979	31.194	31.076	31.386	0					18	6	4	0	0	0	0.65148	1	11642	11642		40.778	2.9666	1	321280			33880	7932	23598	23675	34295	34295					0.020399819208023473
RTLNKVAMK	9	Unmodified	_RTLNKVAMK_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;COPG1|p.V308I|1|0.46|ENSG00000181789|chr3:129260383-129260383|G/A|missense_variant;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.8192749023438	2	530.818418	1059.62228	1.0929	0.00058012	0.29612	0.00015719	1.389	0.0007373	530.8185954560134	17.076	0.08135	17.076	17.039	17.12	0					6	2	3	0	0	0	0.61124	1	4013	4013		18.262	2.6203	1	101200			33881	6864;5273	23599	23676	34296	34296					0.09485771107779328
RTLNKVAMK	9	Unmodified	_RTLNKVAMK_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;COPG1|p.V308I|1|0.46|ENSG00000181789|chr3:129260383-129260383|G/A|missense_variant;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.888916015625	3	354.214704	1059.62228	0.31575	0.00011184	-0.44208	-0.00015659	-0.12633	-4.4747E-05	354.21464430904007	17.353	0.24945	17.353	17.268	17.517	0					8	5	3	0	0	0	0.085655	2	5137	5137;5152		89.029	35.677	1	327390			33882	6864;5273	23599	23676	34297;34298	34297					0.09485771107779328
RTLNKVAMK	9	Unmodified	_RTLNKVAMK_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;COPG1|p.V308I|1|0.46|ENSG00000181789|chr3:129260383-129260383|G/A|missense_variant;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8190307617188	2	530.818418	1059.62228	0.96306	0.00051121	-0.60096	-0.000319	0.36209	0.0001922	530.8184246714549	17.369	0.19852	17.369	17.268	17.466	0					11	4	4	0	0	0	0.032383	1	5138	5138		106.68	8.0537	1	450870			33883	6864;5273	23599	23676	34299	34299					0.09485771107779328
RTLNKVAMK	9	Unmodified	_RTLNKVAMK_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;COPG1|p.V308I|1|0.46|ENSG00000181789|chr3:129260383-129260383|G/A|missense_variant;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.8187866210938	2	530.818418	1059.62228	0.72627	0.00038552	-0.29025	-0.00015407	0.43602	0.00023145	530.8185017250381	17.35	0.20407	17.35	17.243	17.447	0					12	4	4	0	0	0	0.13726	1	4978	4978		70.816	3.3225	1	666110			33884	6864;5273	23599	23676	34300	34300					0.09485771107779328
RTLNKVAMK	9	Unmodified	_RTLNKVAMK_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;COPG1|p.V308I|1|0.46|ENSG00000181789|chr3:129260383-129260383|G/A|missense_variant;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.21466064453125	3	354.214704	1059.62228	-0.053292	-1.8877E-05	-0.34129	-0.00012089	-0.39458	-0.00013977	354.21465166445466	17.35	0.1529	17.35	17.243	17.396	0					10	3	4	0	0	0	0.10915	1	4992	4992		65.157	24.077	1	578960			33885	6864;5273	23599	23676	34301	34301					0.09485771107779328
RTLPFRSSGP	10	Unmodified	_RTLPFRSSGP_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2096252441406	3	373.208607	1116.60399	3.2228	0.0012028	-0.98704	-0.00036837	2.2357	0.0008344	373.20848015264517	32.469	1.4605	32.469	31.586	33.046	0					61	29	3	0	0	0	0.65213	1	12508	12508		26.063	6.8007	1	313520			33886	11566	23600	23677	34302	34302					0.050353524574120456
RTLRHRHSH	9	Unmodified	_RTLRHRHSH_					0	0	0			REV__ENST00000264560.11_1_19:747626-748151:+|nuORF	REV__ENST00000264560.11_1_19:747626-748151:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	600.336181640625	2	600.334479	1198.6544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.336	1	15.336	14.836	15.836	0								0	0	0	0.18645	1	3476	3476		52.937	4.9772	1		+		33887	18060	23601	23678	34303	34303					0.06302319625797281
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	619.3304443359375	2	619.330402	1236.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.709	1	24.709	24.209	25.209	0								0	0	0	0.028659	1	7333	7333		96.665	8.4881	1				33888	7854	23602	23679	34304	34304					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	619.3306884765625	2	619.330402	1236.64625	-0.67122	-0.00041571	0.81384	0.00050404	0.14262	8.8328E-05	619.3308841060161	24.724	0.19773	24.724	24.648	24.846	0					17	7	3	0	0	0	0.14176	1	7602	7602		88.134	26.369	1	173200			33889	7854	23602	23679	34305	34305					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	619.3303833007812	2	619.330402	1236.64625	1.1464	0.00070998	-1.0742	-0.00066527	0.072177	4.4702E-05	619.3295710897406	24.948	0.36336	24.948	24.842	25.205	0					17	7	4	0	0	0	0.026439	1	8803	8803		120.63	36.983	1	1645900			33890	7854	23602	23679	34306	34306					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	619.3306274414062	2	619.330402	1236.64625	0.37125	0.00022992	0.27594	0.0001709	0.64719	0.00040082	619.3304569150494	24.813	0.13815	24.813	24.689	24.827	0					7	3	3	0	0	0	0.25899	1	7789	7789		72.243	16.739	1	113940			33891	7854	23602	23679	34307	34307					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	619.330322265625	2	619.330402	1236.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.83	1	24.83	24.33	25.33	0								0	0	0	0.38093	1	7803	7803		36.318	1.1656	1				33892	7854	23602	23679	34308	34308					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.3305053710938	2	619.330402	1236.64625	0.79607	0.00049303	-0.85486	-0.00052944	-0.058788	-3.6409E-05	619.3299000305913	24.861	0.25554	24.861	24.805	25.06	0					13	5	4	0	0	0	0.062358	1	8642	8642		105.17	1.1514	1	1711500			33893	7854	23602	23679	34309	34309					0.037392830751286965
RTMETAKEK	9	Unmodified	_RTMETAKEK_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.19378662109375	3	365.193858	1092.55974	0.47533	0.00017359	-0.54363	-0.00019853	-0.068301	-2.4943E-05	365.193589039343	12.601	0.13106	12.601	12.528	12.659	0					8	4	3	0	0	0	0.30257	1	2690	2690		57.149	9.9211	1	355810			33894	5939	23603	23680	34310	34310					0.01716580248921673
RTMETAKEK	9	Unmodified	_RTMETAKEK_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2881469726562	2	547.287148	1092.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.629	1	12.629	12.129	13.129	0								0	0	0	0.26817	1	2889	2889		41.08	1.0219	1				33895	5939	23603	23680	34311	34311					0.01716580248921673
RTMETAKEK	9	Unmodified	_RTMETAKEK_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2879638671875	2	547.287148	1092.55974	1.8958	0.0010375	-0.72706	-0.00039791	1.1687	0.00063962	547.286738401905	12.574	0.098838	12.574	12.526	12.625	0					4	2	2	0	0	0	0.034688	1	2718	2718		104.42	5.7942	1	237680			33896	5939	23603	23680	34312	34312					0.01716580248921673
RTMRCAAGL	9	Carbamidomethyl (C)	_RTMRC(Carbamidomethyl (C))AAGL_	RTMRC(1)AAGL		RTMRC(72)AAGL		0	1	0			REV__ENST00000369535.4_1_1:115258780-115259488:-|nuORF	REV__ENST00000369535.4_1_1:115258780-115259488:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.26220703125	2	518.262953	1034.51135	0.052492	2.7205E-05	1.3661	0.00070801	1.4186	0.00073521	518.2622092091426	33.084	0.36628	33.084	32.854	33.22	0					19	10	3	0	0	0	0.13267	1	12200	12200		71.877	7.6702	1	245530	+		33897	18623	23604	23681	34313	34313	661				-0.004521918719774476
RTMSEAALVRK	11	Unmodified	_RTMSEAALVRK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.2396545410156	3	421.23969	1260.69724	-1.2434	-0.00052377	0.9626	0.00040549	-0.28079	-0.00011828	421.24017996206567	20.503	0.12463	20.503	20.438	20.563	0					11	4	3	0	0	0	0.072845	1	5738	5738		96.334	49.106	1	212280			33898	6165	23605	23682	34314	34314					0.07731908848336388
RTMSEAALVRK	11	Unmodified	_RTMSEAALVRK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.2396545410156	3	421.23969	1260.69724	0.85711	0.00036105	1.1517	0.00048512	2.0088	0.00084617	421.24004661134813	20.721	1.7162	20.721	19.164	20.88	0					47	34	2	0	0	0	0.061242	1	6769	6769		99.732	55.092	1	2812500			33899	6165	23605	23682	34315	34315					0.07731908848336388
RTMSEAALVRK	11	Unmodified	_RTMSEAALVRK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	631.3560180664062	2	631.355896	1260.69724	-0.15903	-0.0001004	-0.02123	-1.3403E-05	-0.18026	-0.00011381	631.3560159054343	20.704	0.1184	20.704	20.645	20.764	0					6	2	3	0	0	0	0.52476	1	6760	6760		47.228	5.8011	1	453160			33900	6165	23605	23682	34316	34316					0.07731908848336388
RTMSEAALVRK	11	Unmodified	_RTMSEAALVRK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.5733337402344	3	421.23969	1260.69724	-0.035821	-1.5089E-05	-0.97462	-0.00041055	-1.0104	-0.00042564	421.23940955652824	20.584	0.090687	20.584	20.521	20.612	0					4	2	2	0	0	0	0.086726	1	5817	5817		92.943	50.701	1	99320			33901	6165	23605	23682	34317	34317					0.07731908848336388
RTMSEAALVRK	11	Unmodified	_RTMSEAALVRK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.2395935058594	3	421.23969	1260.69724	1.0544	0.00044414	-1.4356	-0.00060472	-0.38121	-0.00016058	421.2392586719084	20.735	0.31618	20.735	20.575	20.891	0					15	6	5	0	0	0	1.5947E-05	1	6621	6621		174.57	95.501	1	2082700			33902	6165	23605	23682	34318	34318					0.07731908848336388
RTMTVFRKA	9	Unmodified	_RTMTVFRKA_					0	0	0		ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.321044921875	2	555.316043	1108.61753	3.5686	0.0019817	4.2399	0.0023545	7.8085	0.0043362	555.3197499671226	47.259	0.23358	47.259	47.178	47.412	0					18	12	2	0	0	0	0.55379	1	18883	18883		26.693	3.6504	1	100140			33903	2543	23606	23683	34319	34319					0.06756886965013109
RTNARPRR	8	Unmodified	_RTNARPRR_					0	0	0			REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.8038330078125	2	513.805023	1025.59549	-1.632	-0.00083855	-0.96694	-0.00049682	-2.599	-0.0013354	513.8044922514845	11.66	0.15559	11.66	11.597	11.753	0					13	7	3	0	0	0	0.63077	1	2214	2214		44.117	1.7207	1	2076100	+		33904	20282	23607	23684	34320	34320					0.08371843331474338
RTNEVVAIKK	10	Unmodified	_RTNEVVAIKK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.5711975097656	3	386.571545	1156.69281	0.5481	0.00021188	-1.2263	-0.00047406	-0.67821	-0.00026218	386.5710933942127	17.561	0.077873	17.561	17.524	17.602	0					4	2	2	0	0	0	0.41384	1	4219	4219		58.63	3.5457	1	119020			33905	22512	23608	23685	34321	34321					0.12072767697054587
RTNEVVAIKK	10	Unmodified	_RTNEVVAIKK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.571533203125	3	386.571545	1156.69281	0.85439	0.00033028	-0.80577	-0.00031149	0.048619	1.8795E-05	386.5712163565518	17.902	0.1428	17.902	17.816	17.959	0					6	3	2	0	0	0	0.25899	1	5147	5147		75.566	33.228	1	1454100			33906	22512	23608	23685	34322	34322					0.12072767697054587
RTNEVVAIKK	10	Unmodified	_RTNEVVAIKK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	386.5716857910156	3	386.571545	1156.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.673	1	17.673	17.173	18.173	0								0	0	0	0.40797	1	4455	4455		33.039	5.9921	1				33907	22512	23608	23685	34323	34323					0.12072767697054587
RTNEVVAIKK	10	Unmodified	_RTNEVVAIKK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.571533203125	3	386.571545	1156.69281	-0.637	-0.00024625	0.46642	0.00018031	-0.17058	-6.5941E-05	386.5717710331823	17.843	0.1644	17.843	17.734	17.899	0					6	3	2	0	0	0	0.38179	1	5235	5235		62.166	29.127	1	1041900			33908	22512	23608	23685	34324	34324					0.12072767697054587
RTNEVVAIKK	10	Unmodified	_RTNEVVAIKK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.3541259765625	2	579.35368	1156.69281	0.13688	7.9301E-05	0.68045	0.00039422	0.81732	0.00047352	579.354043564419	17.843	0.1644	17.843	17.734	17.899	0					6	3	2	0	0	0	0.44292	1	5237	5237		51.528	1.9917	1	715360			33909	22512	23608	23685	34325	34325					0.12072767697054587
RTNEVVAIKK	10	Unmodified	_RTNEVVAIKK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.5714416503906	3	386.571545	1156.69281	0.5502	0.00021269	-0.80816	-0.00031241	-0.25796	-9.9718E-05	386.57119355198427	17.826	0.16393	17.826	17.767	17.931	0					5	3	2	0	0	0	0.28675	1	5226	5226		72.096	32.222	1	1230600			33910	22512	23608	23685	34326	34326					0.12072767697054587
RTNRHSLVVTQ	11	Unmodified	_RTNRHSLVVTQ_					0	0	0			REV__RP1L1|p.V381Cfs*109|1|0.28|ENSG00000183638|chr8:10612957-10612957|C/-|frameshift_variant	REV__RP1L1|p.V381Cfs*109|1|0.28|ENSG00000183638|chr8:10612957-10612957|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	655.8705444335938	2	655.868017	1309.72148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.483	1	20.483	19.983	20.983	0								0	0	0	0.43892	1	6646	6646		31.634	9.6744	1		+		33911	16944	23609	23686	34327	34327					0.07900885326216667
RTNSPGFQK	9	Unmodified	_RTNSPGFQK_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;RBM26|p.N783Ifs*5|1|0.11|ENSG00000139746|chr13:79342743-79342743|T/-|frameshift_variant;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7726440429688	2	517.772522	1033.53049	1.3094	0.00067795	-0.77709	-0.00040236	0.53227	0.0002756	517.7719458244594	16.414	0.18432	16.414	16.362	16.546	0					6	4	2	0	0	0	0.020674	1	4455	4455		120.87	22.239	1	542850			33912	4351	23610	23687	34328	34328					0.01506804014957197
RTNSPGFQK	9	Unmodified	_RTNSPGFQK_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;RBM26|p.N783Ifs*5|1|0.11|ENSG00000139746|chr13:79342743-79342743|T/-|frameshift_variant;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7723999023438	2	517.772522	1033.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.433	1	16.433	15.933	16.933	0								0	0	0	0.095784	1	4548	4548		72.879	1.0018	1				33913	4351	23610	23687	34329	34329					0.01506804014957197
RTNVVSPKL	9	Unmodified	_RTNVVSPKL_					0	0	0		DNMBP|p.A657V|1|0.19|ENSG00000107554|chr10:99955504-99955504|G/A|missense_variant	DNMBP|p.A657V|1|0.19|ENSG00000107554|chr10:99955504-99955504|G/A|missense_variant	DNMBP|p.A657V|1|0.19|ENSG00000107554|chr10:99955504-99955504|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.3083801269531	2	507.308741	1012.60293	-1.9254	-0.00097678	1.6329	0.00082839	-0.2925	-0.00014839	507.30966929582604	25.638	0.1258	25.638	25.561	25.687	0					6	3	2	0	0	0	0.53064	1	8186	8186		10.265	0	1	80082			33914	833	23611	23688	34330	34330					0.0971313808852301
RTNWPNTGK	9	Unmodified	_RTNWPNTGK_					0	0	0		ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2784423828125	2	537.277972	1072.54139	1.0326	0.00055479	0.031324	1.6829E-05	1.0639	0.00057162	537.2780630093803	19.051	0.23554	19.051	18.928	19.164	0					13	5	3	0	0	0	0.031595	1	5080	5080		107.45	23.808	1	277690			33915	3977	23612	23689	34331	34331					0.008022063892440201
RTPAAVREL	9	Unmodified	_RTPAAVREL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7981872558594	2	506.79854	1011.58253	0.85267	0.00043213	-0.9424	-0.00047761	-0.089723	-4.5471E-05	506.7981114834413	23.095	0.38747	23.095	22.846	23.234	0					23	9	3	0	0	0	0.22837	1	7567	7567		58.23	17.452	1	744970			33916	4132	23613	23690	34332	34332					0.0771996742871579
RTPAAVREL	9	Unmodified	_RTPAAVREL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.798583984375	2	506.79854	1011.58253	1.2744	0.00064588	-1.601	-0.00081137	-0.32655	-0.0001655	506.79771824570463	22.982	0.41183	22.982	22.772	23.184	0					24	8	4	0	0	0	0.53064	1	7735	7735		29.17	0	1	1063300			33917	4132	23613	23690	34333	34333					0.0771996742871579
RTPKKQSTAI	10	Unmodified	_RTPKKQSTAI_					0	0	0			REV__NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant	REV__NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.2274475097656	3	377.227779	1128.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.274	1	46.274	45.774	46.774	0								0	0	0	0.3963	1	17805	17805		31.634	6.5083	1		+		33918	13142	23614	23691	34334	34334					0.10232194662967231
RTPLETLVV	9	Unmodified	_RTPLETLVV_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|191|3|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|191|3|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|191|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.3106689453125	2	514.310949	1026.60735	-0.18605	-9.5689E-05	1.4445	0.00074292	1.2585	0.00064724	514.3115380926929	31.161	0.14261	31.161	31.089	31.231	0					9	5	2	0	0	0	0.32741	1	10299	10299		47.916	3.5384	1	147210			33919	11191	23615	23692	34335	34335					0.09510602511431898
RTPNIDWL	8	Unmodified	_RTPNIDWL_					0	0	0		ENST00000412493.1_1_Y:17659176-17661596:+|nuORF	ENST00000412493.1_1_Y:17659176-17661596:+|nuORF	ENST00000412493.1_1_Y:17659176-17661596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7723693847656	2	507.771991	1013.52943	-0.60982	-0.00030965	0.80999	0.00041129	0.20017	0.00010164	507.77249674996966	32.523	0.41987	32.523	32.411	32.831	0					38	16	3	0	0	0	0.61938	1	10925	10925		45.952	1.8352	1	195520			33920	9318	23616	23693	34336	34336					0.023205896460240183
RTPPLDELQ	9	Unmodified	_RTPPLDELQ_					0	0	0		nc|ENSG00000143469|Q8NB59-4|SYT14;nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59-3|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7880859375	2	534.787838	1067.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.647	1	21.647	21.147	22.147	0								0	0	0	0.099216	1	6911	6911		71.877	1.4789	1				33921	4557	23617	23694	34337	34337					0.03004537609331237
RTPPPPSRK	9	Unmodified	_RTPPPPSRK_					0	0	0		nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;ENSG00000141068|ENST00000644974|KSR1;ENST00000579399.1_1_17:25904538-25912767:+|nuORF	nc|ENSG00000141068|Q8IVT5-4|KSR1	nc|ENSG00000141068|Q8IVT5-4|KSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.3068237304688	2	518.306532	1034.59851	1.3396	0.00069432	-0.87359	-0.00045279	0.46601	0.00024153	518.3061506244688	17.582	0.2887	17.582	17.499	17.788	0					12	7	3	0	0	0	0.30951	1	4999	4999		49.442	0	1	1249100			33922	4426	23618	23695	34338	34338					0.08259673665611444
RTQAAAVQK	9	Unmodified	_RTQAAAVQK_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18;ARHGAP28|p.G328Wfs*4|1|0.21|ENSG00000088756|chr18:6873432-6873433|-/T|frameshift_variant;ARHGAP28|p.F355Lfs*8|2|0.4|ENSG00000088756|chr18:6873514-6873514|T/-|frameshift_variant;ARHGAP28|p.R364Gfs*7|1|0.08|ENSG00000088756|chr18:6873541-6873541|A/-|frameshift_variant;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.78265380859375	2	486.78289	971.551228	0.379	0.00018449	-0.34508	-0.00016798	0.03392	1.6512E-05	486.78273846406057	13.1	0.085523	13.1	13.056	13.142	0					6	2	3	0	0	0	0.010427	1	2913	2913		140.11	52.358	1	316390			33923	4728	23619	23696	34339	34339					0.0643139439459901
RTQAAAVQK	9	Unmodified	_RTQAAAVQK_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18;ARHGAP28|p.G328Wfs*4|1|0.21|ENSG00000088756|chr18:6873432-6873433|-/T|frameshift_variant;ARHGAP28|p.F355Lfs*8|2|0.4|ENSG00000088756|chr18:6873514-6873514|T/-|frameshift_variant;ARHGAP28|p.R364Gfs*7|1|0.08|ENSG00000088756|chr18:6873541-6873541|A/-|frameshift_variant;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7815246582031	2	486.78289	971.551228	0.70466	0.00034301	-1.3958	-0.00067947	-0.69118	-0.00033646	486.7822066281856	13.12	0.23011	13.12	13.046	13.276	0					13	6	3	0	0	0	0.012936	1	2908	2908		134.77	17.862	1	1485100			33924	4728	23619	23696	34340	34340					0.0643139439459901
RTQAAAVQK	9	Unmodified	_RTQAAAVQK_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18;ARHGAP28|p.G328Wfs*4|1|0.21|ENSG00000088756|chr18:6873432-6873433|-/T|frameshift_variant;ARHGAP28|p.F355Lfs*8|2|0.4|ENSG00000088756|chr18:6873514-6873514|T/-|frameshift_variant;ARHGAP28|p.R364Gfs*7|1|0.08|ENSG00000088756|chr18:6873541-6873541|A/-|frameshift_variant;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.78271484375	2	486.78289	971.551228	-0.085452	-4.1597E-05	-0.42685	-0.00020778	-0.5123	-0.00024938	486.78271541242043	13.121	0.24603	13.121	13.067	13.313	0					8	5	2	0	0	0	0.015992	1	3128	3128		128.6	40.848	1	1641900			33925	4728	23619	23696	34341	34341					0.0643139439459901
RTQAAAVQK	9	Unmodified	_RTQAAAVQK_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18;ARHGAP28|p.G328Wfs*4|1|0.21|ENSG00000088756|chr18:6873432-6873433|-/T|frameshift_variant;ARHGAP28|p.F355Lfs*8|2|0.4|ENSG00000088756|chr18:6873514-6873514|T/-|frameshift_variant;ARHGAP28|p.R364Gfs*7|1|0.08|ENSG00000088756|chr18:6873541-6873541|A/-|frameshift_variant;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7827453613281	2	486.78289	971.551228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.844	1	12.844	12.344	13.344	0								0	0	0	0.012515	1	2521	2521		106.88	32.625	1				33926	4728	23619	23696	34342	34342					0.0643139439459901
RTQAAAVQK	9	Unmodified	_RTQAAAVQK_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18;ARHGAP28|p.G328Wfs*4|1|0.21|ENSG00000088756|chr18:6873432-6873433|-/T|frameshift_variant;ARHGAP28|p.F355Lfs*8|2|0.4|ENSG00000088756|chr18:6873514-6873514|T/-|frameshift_variant;ARHGAP28|p.R364Gfs*7|1|0.08|ENSG00000088756|chr18:6873541-6873541|A/-|frameshift_variant;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.78271484375	2	486.78289	971.551228	-0.54633	-0.00026594	0.16246	7.9085E-05	-0.38386	-0.00018686	486.78298357583435	13.071	0.25652	13.071	13.018	13.275	0					8	5	2	0	0	0	0.015992	1	2952	2952		128.6	29.227	1	1631400			33927	4728	23619	23696	34343	34343					0.0643139439459901
RTQDHKIAK	9	Unmodified	_RTQDHKIAK_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8154907226562	2	548.814722	1095.61489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.999	1	11.999	11.499	12.499	0								0	0	0	0.061959	1	2449	2449		82.75	26.029	1				33928	544	23620	23697	34344	34344					0.07090754831688173
RTQDLKTKK	9	Unmodified	_RTQDLKTKK_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;ENST00000399449.3_1_10:75487125-75488312:-|nuORF;BMS1|p.L617Afs*20|1|0.26|ENSG00000165733|chr10:42797085-42797086|-/A|frameshift_variant;ENST00000453174.7_2_10:81666360-81667538:+|nuORF	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.3386840820312	2	559.33803	1116.66151	1.8263	0.0010215	0.56836	0.00031791	2.3947	0.0013394	559.3384172137055	11.77	0.15621	11.77	11.686	11.842	0					12	7	2	0	0	0	0.11898	1	2344	2344		75.043	7.5496	1	120820			33929	5827	23621	23698	34345	34345					0.10784194663006019
RTQDLKTKK	9	Unmodified	_RTQDLKTKK_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;ENST00000399449.3_1_10:75487125-75488312:-|nuORF;BMS1|p.L617Afs*20|1|0.26|ENSG00000165733|chr10:42797085-42797086|-/A|frameshift_variant;ENST00000453174.7_2_10:81666360-81667538:+|nuORF	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.340087890625	2	559.33803	1116.66151	3.4691	0.0019404	-2.2276	-0.001246	1.2415	0.00069443	559.3369435268808	11.759	0.12369	11.759	11.68	11.804	0					11	6	2	0	0	0	0.10915	1	2334	2334		77.318	25.982	1	95146			33930	5827	23621	23698	34346	34346					0.10784194663006019
RTQDPLAR	8	Unmodified	_RTQDPLAR_					0	0	0			REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.767578125	2	478.76724	955.519927	0.0078568	3.7616E-06	-0.33333	-0.00015959	-0.32548	-0.00015583	478.76707975191795	12.94	0.17085	12.94	12.851	13.022	0					14	8	3	0	0	0	0.64144	1	2539	2539		42.396	0	1	385840	+		33931	21567	23622	23699	34347	34347					0.04038821360506972
RTQEEIVAK	9	Unmodified	_RTQEEIVAK_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3023681640625	2	537.301113	1072.58767	1.3845	0.00074391	0.45255	0.00024315	1.8371	0.00098706	537.3013275940573	17.3	0.099533	17.3	17.268	17.368	0					5	3	2	0	0	0	0.18505	1	4109	4109		63.426	10.338	1	91001			33932	5135	23623	23700	34348	34348					0.05428226500657729
RTQEEIVAK	9	Unmodified	_RTQEEIVAK_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3015747070312	2	537.301113	1072.58767	2.099	0.0011278	-0.98793	-0.00053082	1.1111	0.000597	537.3006275781707	17.66	0.12817	17.66	17.579	17.708	0					10	3	4	0	0	0	0.15558	1	5035	5035		66.962	17.426	1	777940			33933	5135	23623	23700	34349	34349					0.05428226500657729
RTQEEIVAK	9	Unmodified	_RTQEEIVAK_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3016967773438	2	537.301113	1072.58767	0.69734	0.00037468	-0.90172	-0.00048449	-0.20438	-0.00010981	537.3012079789919	17.622	0.26972	17.622	17.481	17.751	0					9	5	3	0	0	0	0.19952	1	5114	5114		61.691	1.573	1	463550			33934	5135	23623	23700	34350	34350					0.05428226500657729
RTQEEIVAK	9	Unmodified	_RTQEEIVAK_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3019409179688	2	537.301113	1072.58767	1.9735	0.0010604	-0.66886	-0.00035938	1.3046	0.00070097	537.3007525630238	17.572	0.16782	17.572	17.464	17.632	0					9	3	3	0	0	0	0.18505	1	5106	5106		63.426	8.7041	1	892200			33935	5135	23623	23700	34351	34351					0.05428226500657729
RTQGLMIMK	9	Unmodified	_RTQGLMIMK_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2993774414062	2	539.299004	1076.58346	1.9855	0.0010708	-1.5395	-0.00083026	0.44594	0.00024049	539.2983919168838	27.505	0.88377	27.505	27.378	28.262	0					69	21	4	0	0	0	0.029172	1	9606	9606		93.598	0	1	3452400			33936	4157	23624	23701	34352	34352					0.048227224817310343
RTQGLMIMK	9	Unmodified	_RTQGLMIMK_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.8685302734375	3	359.868428	1076.58346	-0.91838	-0.0003305	0.65596	0.00023606	-0.26242	-9.4436E-05	359.8687418662506	27.266	0.13855	27.266	27.165	27.303	0					7	5	2	0	0	0	0.31937	1	8669	8669		48.602	20.52	1	52136			33937	4157	23624	23701	34353	34353					0.048227224817310343
RTQGLMIMK	9	Unmodified	_RTQGLMIMK_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2994995117188	2	539.299004	1076.58346	1.4259	0.00076899	-1.4027	-0.0007565	0.023168	1.2494E-05	539.2986055416235	27.481	0.65651	27.481	27.372	28.029	0					29	13	5	0	0	0	0.032181	1	9946	9946		101.25	44.532	1	5007700			33938	4157	23624	23701	34354	34354					0.048227224817310343
RTQGLMIMK	9	Unmodified	_RTQGLMIMK_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.2994384765625	2	539.299004	1076.58346	2.1784	0.0011748	-1.5748	-0.0008493	0.60362	0.00032553	539.2984592607023	27.312	0.3056	27.312	27.177	27.483	0					19	7	4	0	0	0	0.13109	1	8908	8908		65.465	2.1591	1	466870			33939	4157	23624	23701	34355	34355					0.048227224817310343
RTQGLMIMK	9	Unmodified	_RTQGLMIMK_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2991333007812	2	539.299004	1076.58346	0.68341	0.00036856	-0.6116	-0.00032984	0.071805	3.8725E-05	539.2989321158718	27.416	0.57198	27.416	27.306	27.878	0					28	11	5	0	0	0	0.021035	1	9819	9819		104.01	16.259	1	4433600			33940	4157	23624	23701	34356	34356					0.048227224817310343
RTQGLMIMK	9	Unmodified	_RTQGLMIMK_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8684387207031	3	359.868428	1076.58346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.458	1	27.458	26.958	27.958	0								0	0	0	0.023427	1	9829	9829		99.013	36.906	1				33941	4157	23624	23701	34357	34357					0.048227224817310343
RTQHIQQPRK	10	Unmodified	_RTQHIQQPRK_					0	0	0		ENSG00000112977|ENST00000230895|DAP	ENSG00000112977|ENST00000230895|DAP	ENSG00000112977|ENST00000230895|DAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.2493591308594	3	431.249577	1290.7269	0.98005	0.00042264	-1.9996	-0.00086231	-1.0195	-0.00043966	431.2486224011318	13.784	0.24981	13.784	13.639	13.889	0					7	5	2	0	0	0	0.41055	1	3449	3449		55.084	0	1	297310			33942	2772	23625	23702	34358	34358					0.09316608908670787
RTQIPMSEK	9	Unmodified	_RTQIPMSEK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2904052734375	2	545.289691	1088.56483	1.766	0.000963	0.087553	4.7742E-05	1.8536	0.0010107	545.289655325294	20.194	0.15444	20.194	20.134	20.288	0					7	5	2	0	0	0	0.24928	1	5363	5363		65.157	15.716	1	57139			33943	6165	23626	23703	34359	34359					0.024088841115371906
RTQIPMSEK	9	Unmodified	_RTQIPMSEK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2902221679688	2	545.289691	1088.56483	1.8674	0.0010183	-1.4175	-0.00077297	0.44988	0.00024532	545.2892760699417	20.527	0.19223	20.527	20.433	20.625	0					9	4	3	0	0	0	0.012127	1	6393	6393		120.27	15.849	1	686560			33944	6165	23626	23703	34360	34360					0.024088841115371906
RTQIPMSEK	9	Unmodified	_RTQIPMSEK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.291015625	2	545.289691	1088.56483	0.5226	0.00028497	1.1726	0.00063942	1.6952	0.00092439	545.7916591104209	20.217	0.077831	20.217	20.189	20.266	0					5	3	2	0	0	0	0.11635	1	5624	5624		78.264	14.73	1	82483			33945	6165	23626	23703	34361	34361					0.024088841115371906
RTQIPMSEK	9	Unmodified	_RTQIPMSEK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.29052734375	2	545.289691	1088.56483	1.1093	0.00060489	0.71126	0.00038784	1.8206	0.00099274	545.2902115352108	20.271	0.10367	20.271	20.22	20.324	0					4	2	2	0	0	0	0.20786	1	5681	5681		61.765	13.163	1	80288			33946	6165	23626	23703	34362	34362					0.024088841115371906
RTQIPMSEK	9	Unmodified	_RTQIPMSEK_					0	0	0		RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2899780273438	2	545.289691	1088.56483	1.9506	0.0010637	-1.7312	-0.00094401	0.21943	0.00011965	545.2889421987909	20.435	0.16645	20.435	20.328	20.494	0					9	3	3	0	0	0	0.020818	1	6502	6502		114.86	25.829	1	912990			33947	6165	23626	23703	34363	34363					0.024088841115371906
RTQKKYFAK	9	Unmodified	_RTQKKYFAK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	390.5645751953125	3	390.564502	1168.67168	-0.107	-4.179E-05	0.054401	2.1247E-05	-0.052599	-2.0543E-05	390.56451878591486	14.859	0.26176	14.859	14.807	15.068	0					8	6	2	0	0	0	0.21419	1	3721	3721		59.931	59.931	1	460600			33948	4281	23627	23704	34364	34364					0.09408802388225013
RTQMPDPKTFK	11	Unmodified	_RTQMPDPKTFK_					0	0	0		ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2384338378906	3	450.239578	1347.69691	0.68052	0.0003064	-1.593	-0.00071725	-0.91252	-0.00041085	450.2389241211891	24.422	0.9157	24.422	23.745	24.661	0					68	18	5	0	0	0	0.43096	1	8552	8552		49.28	18.212	1	1349700			33949	3205	23628	23705	34365	34365					0.03696489128446956
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7935180664062	2	522.793455	1043.57236	1.6645	0.00087018	-1.8359	-0.00095978	-0.17138	-8.9597E-05	522.7924181980571	18.089	0.8243	18.089	17.992	18.816	0					42	19	5	0	0	0	0.0082431	1	5216	5216		144.77	38.085	1	26433000			33950	4873	23629	23706	34366	34366					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7938842773438	2	522.793455	1043.57236	0.44756	0.00023398	0.30986	0.00016199	0.75742	0.00039597	522.793558484503	17.795	0.26852	17.795	17.729	17.998	0					21	7	5	0	0	0	0.01077	1	4522	4522		139.38	38.129	1	3405700			33951	4873	23629	23706	34367	34367					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7935180664062	2	522.793455	1043.57236	1.7968	0.00093935	-1.5057	-0.00078719	0.29105	0.00015216	522.792496256421	18.047	0.7725	18.047	17.939	18.711	0					29	15	5	0	0	0	0.0054332	1	5479	5479		156.16	49.478	1	22137000			33952	4873	23629	23706	34368	34368					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7938232421875	2	522.793455	1043.57236	1.0923	0.00057107	-0.19283	-0.00010081	0.89951	0.00047026	522.793304734384	17.868	0.28598	17.868	17.781	18.067	0					18	6	4	0	0	0	0.019316	1	4536	4536		123.11	24.099	1	3688500			33953	4873	23629	23706	34369	34369					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7937622070312	2	522.793455	1043.57236	-1.2965	-0.00067781	2.1442	0.001121	0.84766	0.00044315	522.7945569875113	17.862	0.18693	17.862	17.768	17.955	0					9	4	3	0	0	0	0.064446	1	4548	4548		90.149	26.615	1	430150			33954	4873	23629	23706	34370	34370					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7940063476562	2	522.793455	1043.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.037	1	18.037	17.537	18.537	0								0	0	0	3.4496E-05	1	5320	5320		133.75	35.123	1				33955	4873	23629	23706	34371	34371					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7938232421875	2	522.793455	1043.57236	3.4057	0.0017805	-1.9742	-0.0010321	1.4315	0.00074838	522.7928235282018	18.052	0.35575	18.052	17.851	18.206	0					11	7	2	0	0	0	0.0054332	1	5339	5339		156.16	49.153	1	4438800			33956	4873	23629	23706	34372	34372					0.05231359703475391
RTRGPTGSPL	10	Unmodified	_RTRGPTGSPL_					0	0	0			REV__ENST00000474451.5_1_20:3215527-3219798:-|nuORF	REV__ENST00000474451.5_1_20:3215527-3219798:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2941284179688	2	521.293622	1040.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.081	1	17.081	16.581	17.581	0								0	0	0	0.2486	1	4185	4185		45.972	0	1		+		33957	19517	23630	23707	34373	34373					0.054027794233206805
RTRGSRTAI	9	Unmodified	_RTRGSRTAI_					0	0	0		ENST00000531579.5_1_11:62568856-62572845:-|nuORF	ENST00000531579.5_1_11:62568856-62572845:-|nuORF	ENST00000531579.5_1_11:62568856-62572845:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.30047607421875	2	509.299239	1016.58392	3.9155	0.0019941	-1.2697	-0.00064667	2.6458	0.0013475	509.2985348824019	14.307	0.080183	14.307	14.262	14.343	0					4	2	2	0	0	0	0.36892	1	3088	3088		44.377	44.377	1	227110			33958	10440	23631	23708	34374	34374					0.07629601517442097
RTRKVELK	8	Unmodified	_RTRKVELK_					0	0	0			REV__nc|ENSG00000284862|Q9UFE4-2|CCDC39	REV__nc|ENSG00000284862|Q9UFE4-2|CCDC39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3302001953125	2	515.330008	1028.64546	-1.5615	-0.00080469	1.6653	0.00085818	0.10379	5.3484E-05	515.3309318879243	17.732	0.19845	17.732	17.624	17.823	0					7	4	2	0	0	0	0.64144	1	4490	4490		24.203	0	1	675480	+		33959	21253	23632	23709	34375	34375					0.1322853321673847
RTRLPATG	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))RTRLPATG_					1	0	0			REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF	REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.26416015625	2	457.264333	912.514114	0.72171	0.00033001	-0.30227	-0.00013822	0.41945	0.0001918	457.26407678316514	47.289	1.3985	47.289	47.041	48.439	0					133	83	2	0	0	0	0.64096	1	18043	18043		42.474	8.9589	1	252900	+		33960	18909	23633	23710	34376	34376					0.054357228488470355
RTRLQKQN	8	Unmodified	_RTRLQKQN_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.308837890625	2	522.307064	1042.59957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.273	1	39.273	38.773	39.773	0								0	0	0	1.7419	1	14946	14946		23.042	0.46283	1				33961	2019	23634	23711	34377	34377					0.07997888034492462
RTRLREVS	8	Unmodified	_RTRLREVS_					0	0	0		ENST00000579991.2_1_17:56160812-56164456:+|nuORF	ENST00000579991.2_1_17:56160812-56164456:+|nuORF	ENST00000579991.2_1_17:56160812-56164456:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.79937744140625	2	508.801614	1015.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.59	1	23.59	23.09	24.09	0								0	0	0	1.7419	1	7225	7225		49.442	1.7842	1				33962	10865	23635	23712	34378	34378					0.08150485660223694
RTRNNVLK	8	Unmodified	_RTRNNVLK_					0	0	0			REV__TRIM50|p.Q231Tfs*5|1|0.2|ENSG00000146755|chr7:73318858-73318859|-/C|frameshift_variant	REV__TRIM50|p.Q231Tfs*5|1|0.2|ENSG00000146755|chr7:73318858-73318859|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.80084228515625	2	500.804157	999.593761	-0.58925	-0.0002951	0.50115	0.00025098	-0.088097	-4.4119E-05	500.80565787955277	25.783	0.49767	25.783	25.569	26.067	0					22	8	4	0	0	0	0.64144	1	9273	9273		42.396	2.338	1	2168100	+		33963	15320	23636	23713	34379	34379					0.09394789522843894
RTRPPQRP	8	Unmodified	_RTRPPQRP_					0	0	0			REV__ENST00000302754.5_1_19:12902350-12902593:+|nuORF	REV__ENST00000302754.5_1_19:12902350-12902593:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341491699219	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.577	1	19.577	19.077	20.077	0								0	0	0	1.7419	1	5089	5089		24.203	0	1		+		33964	18216	23637	23714	34380	34380					0.0754192272564751
RTRRLLSERE	10	Unmodified	_RTRRLLSERE_					0	0	0			REV__ENSG00000130385|ENST00000252677|BMP15	REV__ENSG00000130385|ENST00000252677|BMP15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2572937011719	3	439.25662	1314.74803	0.57673	0.00025333	0.076437	3.3576E-05	0.65317	0.00028691	439.25613592416823	20.25	0.2526	20.25	20.195	20.447	0					9	5	3	0	0	0	0.5155	1	6265	6265		43.651	7.1229	1	615140	+		33965	14577	23638	23715	34381	34381					0.10324574217565896
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.8123168945312	2	580.812179	1159.60981	0.65114	0.00037819	-0.46263	-0.0002687	0.1885	0.00010948	580.8118023924204	18.353	0.19909	18.353	18.304	18.503	0					23	8	4	0	0	0	0.039418	1	4556	4556		83.647	21.54	1	416830			33966	1821	23639	23716	34382	34382					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.5437927246094	3	387.543878	1159.60981	0.86014	0.00033334	-0.82682	-0.00032043	0.033321	1.2913E-05	387.5435515873492	18.683	0.43092	18.683	18.385	18.816	0					42	10	6	0	0	0	0.046074	1	5502	5502		96.665	20.495	1	11793000			33967	1821	23639	23716	34383	34383					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.812744140625	2	580.812179	1159.60981	-0.12827	-7.4498E-05	0.75085	0.0004361	0.62258	0.0003616	580.8126433953304	18.388	0.19463	18.388	18.308	18.503	0					21	7	4	0	0	0	0.039418	1	4775	4775		83.647	52.117	1	576020			33968	1821	23639	23716	34384	34384					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.54376220703125	3	387.543878	1159.60981	0.16694	6.4695E-05	-0.43602	-0.00016898	-0.26908	-0.00010428	387.5436844261083	18.619	1.2813	18.619	18.51	19.792	0					54	26	3	0	0	0	0.026656	1	5731	5731		112.3	36.126	1	5074700			33969	1821	23639	23716	34385	34385					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.8120727539062	2	580.812179	1159.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.663	1	18.663	18.163	19.163	0								0	0	0	0.16368	1	5767	5767		58.23	7.0372	1				33970	1821	23639	23716	34386	34386					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.5441589355469	3	387.543878	1159.60981	0.24681	9.5649E-05	-0.31384	-0.00012163	-0.067031	-2.5977E-05	387.54373389102153	18.459	0.3174	18.459	18.387	18.704	0					16	9	3	0	0	0	0.032181	1	4811	4811		106.88	48.634	1	677130			33971	1821	23639	23716	34387	34387					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.54400634765625	3	387.543878	1159.60981	-0.14893	-5.7715E-05	0.40727	0.00015784	0.25834	0.00010012	387.54401864602073	18.442	0.2152	18.442	18.376	18.591	0					14	6	4	0	0	0	0.14673	1	4822	4822		68.626	1.6639	1	736050			33972	1821	23639	23716	34388	34388					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.8126831054688	2	580.812179	1159.60981	-1.6919	-0.00098266	2.2448	0.0013038	0.55296	0.00032117	580.8135194158398	18.436	0.21521	18.436	18.363	18.578	0					16	6	4	0	0	0	0.021035	1	4814	4814		104.01	37.584	1	432740			33973	1821	23639	23716	34389	34389					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.54388427734375	3	387.543878	1159.60981	-0.66214	-0.00025661	0.4563	0.00017684	-0.20584	-7.9773E-05	387.54408771669284	18.629	3.1819	18.629	18.471	21.653	0					87	64	3	0	0	0	0.022589	1	5597	5597		117.71	47.307	1	11760000			33974	1821	23639	23716	34390	34390					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.5439147949219	3	387.543878	1159.60981	0.5338	0.00020687	-0.69549	-0.00026953	-0.16169	-6.266E-05	387.5436739923527	18.613	0.73929	18.613	18.506	19.245	0					29	15	3	0	0	0	0.13109	1	5613	5613		72.243	7.086	1	12381000			33975	1821	23639	23716	34391	34391					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.8129272460938	2	580.812179	1159.60981	1.7332	0.0010066	-0.63041	-0.00036615	1.1028	0.00064049	580.8118609376924	18.613	0.21319	18.613	18.506	18.719	0					12	4	3	0	0	0	0.058553	1	5614	5614		85.862	25.744	1	2130200			33976	1821	23639	23716	34392	34392					0.03638450969060614
RTSEKPSKL	9	Unmodified	_RTSEKPSKL_					0	0	0		SECISBP2L|p.S902R|1|0.11|ENSG00000138593|chr15:48992844-48992844|G/T|missense_variant	SECISBP2L|p.S902R|1|0.11|ENSG00000138593|chr15:48992844-48992844|G/T|missense_variant	SECISBP2L|p.S902R|1|0.11|ENSG00000138593|chr15:48992844-48992844|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3060913085938	2	523.303655	1044.59276	3.4144	0.0017867	0.60914	0.00031876	4.0235	0.0021055	523.3039447735853	41.728	0.15266	41.728	41.622	41.775	0					8	4	2	0	0	0	0.28897	1	16625	16625		51.193	1.6567	1	120070			33977	22380	23640	23717	34393	34393					0.07224530363282611
RTSGLATLK	9	Unmodified	_RTSGLATLK_					0	0	0		BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant;nc|ENSG00000011114|Q9P203-3|BTBD7;BTBD7|p.Y440Mfs*28|1|0.11|ENSG00000011114|chr14:93263838-93263838|A/-|frameshift_variant;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7	BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant	BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.78778076171875	2	473.787641	945.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.38	1	20.38	19.88	20.88	0								0	0	0	0.11159	1	5445	5445		68.846	4.6389	1				33978	328	23641	23718	34394	34394					0.08577162680137462
RTSGLATLK	9	Unmodified	_RTSGLATLK_					0	0	0		BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant;nc|ENSG00000011114|Q9P203-3|BTBD7;BTBD7|p.Y440Mfs*28|1|0.11|ENSG00000011114|chr14:93263838-93263838|A/-|frameshift_variant;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7	BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant	BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.787353515625	2	473.787641	945.56073	0.69557	0.00032955	-1.4369	-0.0006808	-0.74136	-0.00035125	473.7870362742302	20.723	0.11385	20.723	20.668	20.782	0					4	2	2	0	0	0	0.029571	1	6486	6486		109.44	18.662	1	268940			33979	328	23641	23718	34395	34395					0.08577162680137462
RTSGLVFDDL	10	Unmodified	_RTSGLVFDDL_					0	0	0			REV__PRAF2|p.A20T|1|0.26|ENSG00000243279|chrX:49073930-49073930|C/T|missense_variant	REV__PRAF2|p.A20T|1|0.26|ENSG00000243279|chrX:49073930-49073930|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7932739257812	2	561.793121	1121.57169	1.7903	0.0010058	-1.3603	-0.00076422	0.42999	0.00024156	561.7924651870698	21.23	0.16188	21.23	21.126	21.288	0					10	3	4	0	0	0	0.49411	1	6891	6891		45.972	1.5951	1	672870	+		33980	21409	23642	23719	34396	34396					0.0157652026375672
RTSGRSNINVG	11	Unmodified	_RTSGRSNINVG_					0	0	0		nc|ENSG00000165694|Q6ZUT3-2|FRMD7;ENSG00000165694|ENST00000298542|FRMD7	nc|ENSG00000165694|Q6ZUT3-2|FRMD7	nc|ENSG00000165694|Q6ZUT3-2|FRMD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.812255859375	2	580.810168	1159.60578	3.2436	0.0018839	0.38234	0.00022207	3.6259	0.002106	580.8105540686169	18.597	0.59084	18.597	18.489	19.079	0					19	12	3	0	0	0	0.38582	1	5605	5605		51.528	2.0862	1	5027800			33981	5822	23643	23720	34397	34397					0.03236361475364902
RTSGSVYITLK	11	Unmodified	_RTSGSVYITLK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.8516235351562	2	612.85097	1223.68739	0.036472	2.2352E-05	-0.18292	-0.0001121	-0.14645	-8.975E-05	612.8509334183924	28.567	0.33165	28.567	28.486	28.818	0					17	8	3	0	0	0	0.2472	1	10142	10142		68.626	25.762	1	177940			33982	4377	23644	23721	34398	34398					0.08449044114604476
RTSGSVYITLK	11	Unmodified	_RTSGSVYITLK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.8509521484375	2	612.85097	1223.68739	1.8374	0.0011261	-1.5511	-0.00095058	0.28633	0.00017548	612.8499155515204	28.541	0.46147	28.541	28.432	28.894	0					14	9	2	0	0	0	0.089609	1	10480	10480		92.239	11.784	1	138380			33983	4377	23644	23721	34399	34399					0.08449044114604476
RTSGSVYITLK	11	Unmodified	_RTSGSVYITLK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.8511962890625	2	612.85097	1223.68739	-0.0015325	-9.392E-07	0.16823	0.0001031	0.1667	0.00010216	612.851098827716	28.518	0.417	28.518	28.409	28.826	0					19	8	3	0	0	0	0.12878	1	10354	10354		82.831	6.6608	1	383160			33984	4377	23644	23721	34400	34400					0.08449044114604476
RTSIPVHSK	9	Unmodified	_RTSIPVHSK_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;ENST00000560849.2_2_15:50868060-50878706:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.2014465332031	3	342.201452	1023.58253	0.6763	0.00023143	-0.87652	-0.00029995	-0.20022	-6.8516E-05	342.2011757144964	15.9	0.25866	15.9	15.775	16.033	0					11	6	3	0	0	0	0.40759	1	4178	4178		41.08	1.8272	1	279630			33985	1875	23645	23722	34401	34401					0.07167967428711108
RTSIPVHSK	9	Unmodified	_RTSIPVHSK_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;ENST00000560849.2_2_15:50868060-50878706:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7985229492188	2	512.79854	1023.58253	0.54434	0.00027914	-0.64047	-0.00032843	-0.096126	-4.9293E-05	512.7982114247587	15.841	0.15984	15.841	15.736	15.896	0					5	3	2	0	0	0	0.12418	1	4422	4422		76.17	21.393	1	401820			33986	1875	23645	23722	34402	34402					0.07167967428711108
RTSIPVHSK	9	Unmodified	_RTSIPVHSK_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;ENST00000560849.2_2_15:50868060-50878706:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.798583984375	2	512.79854	1023.58253	0.069162	3.5466E-05	-0.2731	-0.00014005	-0.20394	-0.00010458	512.7984254850477	15.857	0.16607	15.857	15.747	15.913	0					5	3	2	0	0	0	0.064446	1	4263	4263		83.647	34.111	1	277210			33987	1875	23645	23722	34403	34403					0.07167967428711108
RTSNERPGSG	10	Unmodified	_RTSNERPGSG_					0	0	0		ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7626342773438	2	530.760143	1059.50573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.273	1	15.273	14.773	15.773	0								0	0	0	0.30854	1	3909	3909		49.536	3.5638	1				33988	5617	23646	23723	34404	34404					-0.021638758584231255
RTSPVPRQK	9	Unmodified	_RTSPVPRQK_					0	0	0		ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13;nc|ENSG00000140945|P55290-3|CDH13;nc|ENSG00000140945|P55290-2|CDH13	ENSG00000140945|ENST00000567109|CDH13	ENSG00000140945|ENST00000567109|CDH13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.817626953125	2	534.817264	1067.61998	2.2406	0.0011983	-1.6402	-0.00087722	0.60034	0.00032107	534.8162486228584	14.341	0.36602	14.341	14.184	14.55	0					20	9	3	0	0	0	0.36892	1	3467	3467		44.377	0	1	212820			33989	4414	23647	23724	34405	34405					0.08887058694313055
RTSSIQPSFH	10	Unmodified	_RTSSIQPSFH_					0	0	0		TMC5|p.R276H|1|0.36|ENSG00000103534|chr16:19444119-19444119|G/A|missense_variant	TMC5|p.R276H|1|0.36|ENSG00000103534|chr16:19444119-19444119|G/A|missense_variant	TMC5|p.R276H|1|0.36|ENSG00000103534|chr16:19444119-19444119|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.2966918945312	2	580.296362	1158.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.614	1	18.614	18.114	19.114	0								0	0	0	0.24547	1	5743	5743		54.722	3.5297	1				33990	22542	23648	23725	34406	34406					0.005224582151640789
RTSSKDKAP	9	Unmodified	_RTSSKDKAP_					0	0	0			REV__ENSG00000130382|ENST00000252674|MLLT1	REV__ENSG00000130382|ENST00000252674|MLLT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2724609375	2	495.272355	988.530158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.804	1	16.804	16.304	17.304	0								0	0	0	0.14033	1	4877	4877		62.107	0	1		+		33991	14576	23649	23726	34407	34407					0.03543384295085161
RTSSSIVLK	9	Unmodified	_RTSSSIVLK_					0	0	0		nc|ENSG00000072201|Q8TBB1-2|LNX1;ENSG00000072201|ENST00000263925|LNX1	nc|ENSG00000072201|Q8TBB1-2|LNX1	nc|ENSG00000072201|Q8TBB1-2|LNX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.8013610839844	2	495.800749	989.586944	0.5375	0.00026649	0.078239	3.8791E-05	0.61574	0.00030529	495.8008274150359	20.502	0.19211	20.502	20.402	20.594	0					6	4	2	0	0	0	0.16806	1	6380	6380		65.465	22.991	1	146040			33992	1486	23650	23727	34408	34408					0.09173431851615987
RTSSSRAVVVK	11	Unmodified	_RTSSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.3543701171875	2	595.354211	1188.69387	0.18401	0.00010955	-0.011873	-7.0684E-06	0.17214	0.00010248	595.354209282104	15.238	0.13763	15.238	15.19	15.328	0					9	3	4	0	0	0	0.18749	1	3899	3899		58.63	22.183	1	614740		+	33993	11643	23651	23728	34409	34409					0.10706982065971715
RTSSSRAVVVK	11	Unmodified	_RTSSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.23870849609375	3	397.238566	1188.69387	-0.63479	-0.00025216	0.86246	0.0003426	0.22766	9.0437E-05	397.23889546432406	15.17	0.11617	15.17	15.113	15.229	0					6	2	3	0	0	0	0.24586	1	3950	3950		68.786	3.508	1	545830		+	33994	11643	23651	23728	34410	34410					0.10706982065971715
RTSSSTQLK	9	Unmodified	_RTSSSTQLK_					0	0	0		nc|ENSG00000163138|Q8N7B6-3|PACRGL;nc|ENSG00000163138|Q8N7B6-4|PACRGL;nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2772521972656	2	504.277638	1006.54072	0.77297	0.00038979	-1.5359	-0.0007745	-0.7629	-0.00038471	504.2767242344836	13.628	0.16152	13.628	13.555	13.716	0					8	4	3	0	0	0	0.035106	1	3152	3152		104.01	41.906	1	329950			33995	5532	23652	23729	34411	34411					0.037713669495246904
RTSSSTQLK	9	Unmodified	_RTSSSTQLK_					0	0	0		nc|ENSG00000163138|Q8N7B6-3|PACRGL;nc|ENSG00000163138|Q8N7B6-4|PACRGL;nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2777099609375	2	504.277638	1006.54072	0.094809	4.781E-05	-0.17627	-8.8889E-05	-0.08146	-4.1078E-05	504.2775975690443	13.617	0.16363	13.617	13.557	13.721	0					5	3	2	0	0	0	0.054723	1	3365	3365		93.598	27.168	1	389890			33996	5532	23652	23729	34412	34412					0.037713669495246904
RTSSSTQLK	9	Unmodified	_RTSSSTQLK_					0	0	0		nc|ENSG00000163138|Q8N7B6-3|PACRGL;nc|ENSG00000163138|Q8N7B6-4|PACRGL;nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.277587890625	2	504.277638	1006.54072	-0.38182	-0.00019254	0.91984	0.00046385	0.53801	0.00027131	504.27801606118527	13.533	0.15656	13.533	13.481	13.638	0					8	3	3	0	0	0	0.021015	1	3173	3173		120.31	21.677	1	194020			33997	5532	23652	23729	34413	34413					0.037713669495246904
RTSWCTTT	8	Unmodified	_RTSWCTTT_					0	0	0			REV__SH3BP4|p.Q622Kfs*114|1|0.42|ENSG00000130147|chr2:235042628-235042628|C/-|frameshift_variant	REV__SH3BP4|p.Q622Kfs*114|1|0.42|ENSG00000130147|chr2:235042628-235042628|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.21832275390625	2	478.218734	954.422915	2.2488	0.0010754	-3.7643	-0.0018001	-1.5155	-0.00072474	478.2170375147639	23.158	0.31618	23.158	23.053	23.369	0					16	6	4	0	0	0	0.52345	1	7821	7821		57.811	1.0902	1	2003000	+		33998	21512	23653	23730	34414	34414					-0.05611908910805141
RTTEGRRRA	9	Unmodified	_RTTEGRRRA_					0	0	0		ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.318359375	2	551.813045	1101.61154	3.6929	0.0020378	3.0028	0.001657	6.6956	0.0036947	551.8146029308089	41.05	0.40271	41.05	40.825	41.227	0					13	8	2	0	0	0	0.1424	1	16315	16315		69.628	2.134	1	100530			33999	7447	23654	23731	34415	34415					0.06479504777712464
RTTFLHISK	9	Unmodified	_RTTFLHISK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.2171630859375	3	368.217102	1101.62948	0.26743	9.8472E-05	-0.031961	-1.1769E-05	0.23547	8.6703E-05	368.2171099791429	24.071	0.31485	24.071	23.963	24.278	0					8	6	2	0	0	0	0.22823	1	8390	8390		73.841	18.757	1	110040			34000	6176	23655	23732	34416	34416					0.08272826979850834
RTTFLHISK	9	Unmodified	_RTTFLHISK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.2169189453125	3	368.217102	1101.62948	-0.20247	-7.4552E-05	-0.12278	-4.5211E-05	-0.32525	-0.00011976	368.21706456900154	24.059	0.3649	24.059	23.931	24.295	0					19	7	3	0	0	0	0.18505	1	8248	8248		79.07	15.644	1	253170			34001	6176	23655	23732	34417	34417					0.08272826979850834
RTTHNIIEK	9	Unmodified	_RTTHNIIEK_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.2120666503906	3	371.212128	1110.61456	0.81018	0.00030075	-1.1466	-0.00042563	-0.33641	-0.00012488	371.2117431540964	16.43	0.22876	16.43	16.334	16.562	0					11	5	3	0	0	0	0.073657	1	4442	4442		102.95	24.691	1	627070			34002	7639	23656	23733	34418	34418					0.0636733511184957
RTTHNIIEK	9	Unmodified	_RTTHNIIEK_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.3150024414062	2	556.314554	1110.61456	1.8095	0.0010067	-0.85993	-0.00047839	0.94957	0.00052826	556.3140493900756	16.414	0.22842	16.414	16.318	16.546	0					12	5	3	0	0	0	0.024312	1	4452	4452		114.86	42.981	1	1100900			34003	7639	23656	23733	34419	34419					0.0636733511184957
RTTHNIIEK	9	Unmodified	_RTTHNIIEK_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.314697265625	2	556.314554	1110.61456	0.11581	6.4428E-05	0.80717	0.00044904	0.92298	0.00051347	556.314989079866	16.133	0.12676	16.133	16.069	16.196	0					10	4	3	0	0	0	0.14578	1	3802	3802		68.846	8.7279	1	324400			34004	7639	23656	23733	34420	34420					0.0636733511184957
RTTHNIIEK	9	Unmodified	_RTTHNIIEK_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.3148193359375	2	556.314554	1110.61456	1.6907	0.00094054	-1.2266	-0.00068236	0.46411	0.00025819	556.3138771347592	16.372	0.31622	16.372	16.313	16.63	0					11	6	3	0	0	0	0.017741	1	4675	4675		125.71	29.898	1	3507700			34005	7639	23656	23733	34421	34421					0.0636733511184957
RTTHNIIEK	9	Unmodified	_RTTHNIIEK_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3150024414062	2	556.314554	1110.61456	1.8228	0.0010141	-1.0457	-0.00058171	0.77719	0.00043236	556.3140399649398	16.392	0.26566	16.392	16.283	16.549	0					13	5	3	0	0	0	0.15593	1	4540	4540		66.92	3.3864	1	1752600			34006	7639	23656	23733	34422	34422					0.0636733511184957
RTTKGAREAGG	11	Unmodified	_RTTKGAREAGG_					0	0	0		ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469;ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant;ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant;ZNF469|p.R204Gfs*142|1|0.15|ENSG00000225614|chr16:88428075-88428075|C/-|frameshift_variant;ZNF469|p.Q212Rfs*134|1|0.53|ENSG00000225614|chr16:88428098-88428098|C/-|frameshift_variant;ZNF469|p.P206Qfs*140|1|0.19|ENSG00000225614|chr16:88428083-88428083|C/-|frameshift_variant;ZNF469|p.P398Lfs*104|1|0.59|ENSG00000225614|chr16:88428659-88428659|C/-|frameshift_variant;ZNF469|p.L482Cfs*20|1|0.58|ENSG00000225614|chr16:88428909-88428909|C/-|frameshift_variant;ZNF469|p.H655Tfs*77|1|0.31|ENSG00000225614|chr16:88429427-88429427|C/-|frameshift_variant;ZNF469|p.H655Pfs*83|1|0.27|ENSG00000225614|chr16:88429426-88429427|-/C|frameshift_variant;ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.I1874Yfs*24|1|0.39|ENSG00000225614|chr16:88433167-88433167|C/-|frameshift_variant;ZNF469|p.Q2396Kfs*49|1|0.23|ENSG00000225614|chr16:88434735-88434735|C/-|frameshift_variant	ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant	ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.2979125976562	2	552.299436	1102.58432	0.24177	0.00013353	-3.3684	-0.0018604	-3.1266	-0.0017268	552.2978764561509	34.148	0.1294	34.148	34.059	34.188	0					10	5	3	0	0	0	0.575	1	11508	11508		38.754	0	1	72665			34007	7869	23657	23734	34423	34423					0.03712976446649918
RTTMMGSSAKS	11	Unmodified	_RTTMMGSSAKS_					0	0	0			REV__ENST00000569795.5_1_15:72558271-72559838:-|nuORF	REV__ENST00000569795.5_1_15:72558271-72559838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.77734375	2	578.77609	1155.53763	-0.055347	-3.2033E-05	1.725	0.00099837	1.6696	0.00096633	578.7772351682271	11.852	0.29828	11.852	11.786	12.084	0					13	10	2	0	0	0	0.72624	1	2388	2388		25.126	1.6033	1	385190	+		34008	20369	23658	23735	34424	34424					-0.033919674911430775
RTTRHQKL	8	Unmodified	_RTTRHQKL_					0	0	0			REV__ENST00000478067.1_1_3:148709334-148714532:+|nuORF	REV__ENST00000478067.1_1_3:148709334-148714532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3115844726562	2	520.309606	1038.60466	3.3716	0.0017543	-0.58274	-0.0003032	2.7888	0.0014511	520.3093999134022	35.857	1.2602	35.857	35.654	36.914	0					73	25	4	0	0	0	0.65148	1	14010	14010		40.778	4.3314	1	79575000	+		34009	15916	23659	23736	34425	34425					0.08690191897130717
RTVEPPPL	8	Unmodified	_RTVEPPPL_					0	0	0			REV__ENST00000581960.1_1_18:812149-812320:-|nuORF	REV__ENST00000581960.1_1_18:812149-812320:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.7633361816406	2	454.763635	907.512717	-0.13185	-5.9959E-05	0.20968	9.5354E-05	0.077833	3.5396E-05	454.76370136605465	35.965	0.24578	35.965	35.796	36.041	0					17	7	3	0	0	0	0.68754	1	13936	13936		35.201	0	1	391620	+		34010	20460	23660	23737	34426	34426					0.055260887600866226
RTVGVAGLA	9	Unmodified	_RTVGVAGLA_					0	0	0			REV__FUT11|p.R107Pfs*169|1|0.38|ENSG00000196968|chr10:73772649-73772650|-/C|frameshift_variant	REV__FUT11|p.R107Pfs*169|1|0.38|ENSG00000196968|chr10:73772649-73772650|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.25799560546875	2	422.255977	842.497401	0.99927	0.00042195	-1.5591	-0.00065835	-0.55987	-0.00023641	422.2554506236672	25.306	0.40021	25.306	25.195	25.595	0					33	9	5	0	0	0	0.25109	1	8675	8675		55.504	2.1528	1	5010600	+		34011	17298	23661	23738	34427	34427					0.06985221962895594
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.8852844238281	3	334.885464	1001.63456	0.24951	8.3558E-05	-0.61437	-0.00020574	-0.36486	-0.00012219	334.88526371478343	11.635	0.16958	11.635	11.588	11.757	0					18	8	4	0	0	0	0.076532	1	2178	2178		92.239	19.36	1	2889800			34012	7893	23662	23739	34428	34428					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.8853759765625	3	334.885464	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.827	1	11.827	11.327	12.327	0								0	0	0	0.0016356	1	2359	2359		128.35	46.107	1				34013	7893	23662	23739	34429	34429					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.8854064941406	3	334.885464	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.619	1	12.619	12.119	13.119	0								0	0	0	0.29356	1	2695	2695		43.651	8.4988	1				34014	7893	23662	23739	34430	34430					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.8853759765625	3	334.885464	1001.63456	-0.66759	-0.00022357	0.48433	0.0001622	-0.18326	-6.1372E-05	334.88558315712663	11.674	0.1716	11.674	11.618	11.79	0					12	7	2	0	0	0	0.026848	1	2271	2271		128.35	55.469	1	2414800			34015	7893	23662	23739	34431	34431					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.8855285644531	3	334.885464	1001.63456	0.53719	0.0001799	-0.28687	-9.6069E-05	0.25032	8.383E-05	334.88540830852804	11.927	0.17196	11.927	11.846	12.018	0					9	5	3	0	0	0	0.40353	1	2578	2578		48.602	0	1	219370			34016	7893	23662	23739	34432	34432					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.8854675292969	3	334.885464	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.836	1	11.836	11.336	12.336	0								0	0	0	0.012515	1	2372	2372		123.11	29.514	1				34017	7893	23662	23739	34433	34433					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.8853454589844	3	334.885464	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.219	1	12.219	11.719	12.719	0								0	0	0	0.16453	1	2550	2550		63.426	0	1				34018	7893	23662	23739	34434	34434					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.8855285644531	3	334.885464	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.626	1	12.626	12.126	13.126	0								0	0	0	0.19847	1	2732	2732		58.246	3.4699	1				34019	7893	23662	23739	34435	34435					0.13381130842458333
RTVGVSKKK	9	Unmodified	_RTVGVSKKK_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000412454.1_1_17:14608395-14608521:-|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.8853759765625	3	334.885464	1001.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.984	1	12.984	12.484	13.484	0								0	0	0	0.17378	1	2902	2902		61.691	6.915	1				34020	7893	23662	23739	34436	34436					0.13381130842458333
RTVIKGNPQ	9	Unmodified	_RTVIKGNPQ_					0	0	0			REV__nc|ENSG00000109654|Q9C040|TRIM2	REV__nc|ENSG00000109654|Q9C040|TRIM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.7989807128906	2	506.79854	1011.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.716	1	22.716	22.216	23.216	0								0	0	0	0.3428	1	6729	6729		26.693	0	1		+		34021	13906	23663	23740	34437	34437					0.07719967428704422
RTVPVGGVVK	10	Unmodified	_RTVPVGGVVK_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.3199768066406	2	506.319109	1010.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.499	1	21.499	20.999	21.999	0								0	0	0	0.39264	1	5932	5932		32.751	7.1765	1				34022	8046	23664	23741	34438	34438					0.11877728468186888
RTVPVGGVVK	10	Unmodified	_RTVPVGGVVK_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.3190002441406	2	506.319109	1010.62366	-0.24476	-0.00012393	-0.10906	-5.5221E-05	-0.35382	-0.00017915	506.3190794055568	21.696	0.16837	21.696	21.587	21.755	0					5	3	2	0	0	0	0.45669	1	7114	7114		50.034	2.1179	1	610190			34023	8046	23664	23741	34439	34439					0.11877728468186888
RTVSDSIKK	9	Unmodified	_RTVSDSIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.20477294921875	3	345.204862	1032.59276	0.93063	0.00032126	-1.0297	-0.00035547	-0.099116	-3.4215E-05	345.204612787487	15.592	0.097919	15.592	15.503	15.601	0					4	2	2	0	0	0	0.015992	1	4049	4049		112.85	31.32	1	127310			34024	4144	23665	23742	34440	34440					0.07776530363275924
RTVSDSIKK	9	Unmodified	_RTVSDSIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.2051086425781	3	345.204862	1032.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.349	1	15.349	14.849	15.849	0								0	0	0	0.1568	1	3482	3482		49.466	7.1278	1				34025	4144	23665	23742	34441	34441					0.07776530363275924
RTVSDSIKK	9	Unmodified	_RTVSDSIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.2047119140625	3	345.204862	1032.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.563	1	15.563	15.063	16.063	0								0	0	0	0.0083867	1	4280	4280		150.15	16.158	1				34026	4144	23665	23742	34442	34442					0.07776530363275924
RTVSDSIKK	9	Unmodified	_RTVSDSIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.3046875	2	517.303655	1032.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.368	1	15.368	14.868	15.868	0								0	0	0	0.26578	1	3432	3432		41.427	8.6142	1				34027	4144	23665	23742	34443	34443					0.07776530363275924
RTVSDSIKK	9	Unmodified	_RTVSDSIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.3035888671875	2	517.303655	1032.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.359	1	15.359	14.859	15.859	0								0	0	0	0.19847	1	3429	3429		51.193	1.7511	1				34028	4144	23665	23742	34444	34444					0.07776530363275924
RTVSDSIKK	9	Unmodified	_RTVSDSIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.5391540527344	3	345.204862	1032.59276	-0.033775	-1.1659E-05	-0.077991	-2.6923E-05	-0.11177	-3.8582E-05	345.20482837323226	15.554	0.15247	15.554	15.461	15.613	0					7	3	3	0	0	0	0.01942	1	4118	4118		108.31	16.074	1	421450			34029	4144	23665	23742	34445	34445					0.07776530363275924
RTVSDSIKK	9	Unmodified	_RTVSDSIKK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.3038330078125	2	517.303655	1032.59276	1.5498	0.00080171	-0.76731	-0.00039693	0.78248	0.00040478	517.3033447569014	15.537	0.3522	15.537	15.445	15.797	0					9	7	2	0	0	0	0.082776	1	4130	4130		83.647	11.77	1	1398900			34030	4144	23665	23742	34446	34446					0.07776530363275924
RTVTLWTY	8	Unmodified	_RTVTLWTY_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2822265625	2	520.282192	1038.54983	0.65801	0.00034235	-0.065942	-3.4308E-05	0.59207	0.00030804	520.2820951825066	32.128	0.37955	32.128	31.946	32.325	0					35	16	3	0	0	0	0.64144	1	10326	10326		40.573	0	1	458380			34031	1727	23666	23743	34447	34447					0.032097603058673485
RTVTRKIEG	9	Unmodified	_RTVTRKIEG_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3173217773438	2	530.317097	1058.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.078	1	16.078	15.578	16.578	0								0	0	0	0.24544	1	4285	4285		44.377	0.26039	1		+		34032	16139	23667	23744	34448	34448					0.09267638974461079
RTWQSQPK	8	Unmodified	_RTWQSQPK_					0	0	0			REV__ENST00000221419.9_1_19:39331195-39334516:-|nuORF	REV__ENST00000221419.9_1_19:39331195-39334516:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7797241210938	2	515.775065	1029.53558	1.2136	0.00062593	-1.909	-0.00098461	-0.69541	-0.00035868	515.7742013044658	15.576	0.66764	15.576	15.241	15.909	0					25	16	2	0	0	0	0.6088	1	4179	4179		47.657	0	1	867640	+		34033	17889	23668	23745	34449	34449					0.021991078775499773
RTYDGDGYKK	10	Unmodified	_RTYDGDGYKK_					0	0	0		NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant;ENSG00000272325|ENST00000607016|NUDT3	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.7939453125	2	601.793652	1201.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.067	1	15.067	14.567	15.567	0								0	0	0	0.30539	1	3367	3367		50.034	14.415	1				34034	8087	23669	23746	34450	34450					-0.019972653673448804
RTYDGDGYKK	10	Unmodified	_RTYDGDGYKK_					0	0	0		NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant;ENSG00000272325|ENST00000607016|NUDT3	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.7935180664062	2	601.793652	1201.57275	0.86783	0.00052226	-0.81765	-0.00049206	0.05018	3.0198E-05	601.7931533212555	15.281	0.20508	15.281	15.18	15.385	0					6	4	2	0	0	0	0.27065	1	4161	4161		70.816	19.481	1	438940			34035	8087	23669	23746	34451	34451					-0.019972653673448804
RTYDGDGYKK	10	Unmodified	_RTYDGDGYKK_					0	0	0		NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant;ENSG00000272325|ENST00000607016|NUDT3	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.5315856933594	3	401.531527	1201.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.105	1	15.105	14.605	15.605	0								0	0	0	0.11831	1	3322	3322		79.07	39.197	1				34036	8087	23669	23746	34452	34452					-0.019972653673448804
RTYDGDGYKK	10	Unmodified	_RTYDGDGYKK_					0	0	0		NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant;ENSG00000272325|ENST00000607016|NUDT3	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	NUDT3|p.T76Hfs*5|1|0.07|ENSG00000272325|chr6:34295674-34295674|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.5315246582031	3	401.531527	1201.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.285	1	15.285	14.785	15.785	0								0	0	0	0.053304	1	3995	3995		102.05	49.111	1				34037	8087	23669	23746	34453	34453					-0.019972653673448804
RTYDREGFKK	10	Unmodified	_RTYDREGFKK_					0	0	0		ENSG00000173598|ENST00000415493|NUDT4;ENSG00000177144|ENST00000322209|NUDT4B	ENSG00000173598|ENST00000415493|NUDT4	ENSG00000173598|ENST00000415493|NUDT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	650.3440551757812	2	650.343843	1298.67313	0.23073	0.00015005	-1.2296	-0.00079968	-0.99891	-0.00064963	650.3428717249649	16.358	0.31751	16.358	16.303	16.62	0					13	7	2	0	0	0	0.19191	1	4427	4427		80.455	15.297	1	658550			34038	6438	23670	23747	34454	34454					0.035743916863111735
RTYPELVL	8	Unmodified	_RTYPELVL_					0	0	0		PCDHB5|p.K190T|1|0.24|ENSG00000113209|chr5:141136003-141136003|A/C|missense_variant	PCDHB5|p.K190T|1|0.24|ENSG00000113209|chr5:141136003-141136003|A/C|missense_variant	PCDHB5|p.K190T|1|0.24|ENSG00000113209|chr5:141136003-141136003|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7846374511719	2	495.784567	989.554582	-0.062224	-3.085E-05	-0.14878	-7.3762E-05	-0.211	-0.00010461	495.7844388991544	36.059	0.38204	36.059	35.854	36.236	0					41	18	3	0	0	0	0.69742	1	11777	11777		39.253	0	1	389730			34039	11907	23671	23748	34455	34455					0.059386444485994616
RTYSGPMNK	9	Unmodified	_RTYSGPMNK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2613525390625	2	527.260933	1052.50731	1.2897	0.00068001	0.31291	0.00016499	1.6026	0.00084499	527.2612167245234	17.389	0.18019	17.389	17.297	17.478	0					10	6	2	0	0	0	0.27123	1	4133	4133		53.089	3.6474	1	155370			34040	3372	23672	23749	34456	34456					-0.016839580940086307
RTYSGPMNK	9	Unmodified	_RTYSGPMNK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2615966796875	2	527.260933	1052.50731	1.7332	0.00091386	-0.012283	-6.4764E-06	1.7209	0.00090738	527.2611658506887	17.504	0.16799	17.504	17.42	17.588	0					9	5	2	0	0	0	0.16806	1	4375	4375		65.465	19.493	1	45290			34041	3372	23672	23749	34457	34457					-0.016839580940086307
RTYSGPMNK	9	Unmodified	_RTYSGPMNK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.261962890625	2	527.260933	1052.50731	0.6521	0.00034383	0.55432	0.00029227	1.2064	0.0006361	527.2612661471755	17.691	0.36714	17.691	17.531	17.899	0					14	7	3	0	0	0	0.034688	1	5138	5138		104.42	37.994	1	791630			34042	3372	23672	23749	34458	34458					-0.016839580940086307
RTYSGPMNK	9	Unmodified	_RTYSGPMNK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2609252929688	2	527.260933	1052.50731	1.6285	0.00085862	-1.4567	-0.00076803	0.17181	9.0588E-05	527.2602678517442	17.674	0.27025	17.674	17.464	17.734	0					14	5	4	0	0	0	0.090954	1	5132	5132		81.525	14.031	1	1942000			34043	3372	23672	23749	34459	34459					-0.016839580940086307
RTYVGSMPGR	10	Unmodified	_RTYVGSMPGR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.2877197265625	2	562.287482	1122.56041	1.4396	0.00080946	-1.2173	-0.00068448	0.22228	0.00012498	562.2869820081946	22.563	0.1673	22.563	22.501	22.668	0					11	5	3	0	0	0	0.30252	1	6405	6405		66.962	10.241	1	239180			34044	2200	23673	23750	34460	34460					0.004034196886323116
RTYVGSMPGR	10	Unmodified	_RTYVGSMPGR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2877807617188	2	562.287482	1122.56041	1.7866	0.0010046	-1.8266	-0.0010271	-0.040001	-2.2492E-05	562.2866647073195	22.887	0.49977	22.887	22.645	23.145	0					22	8	4	0	0	0	0.30252	1	7512	7512		66.962	0.53265	1	1605800			34045	2200	23673	23750	34461	34461					0.004034196886323116
RTYVGSMPGR	10	Unmodified	_RTYVGSMPGR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.2879028320312	2	562.287482	1122.56041	0.12994	7.3064E-05	0.38369	0.00021575	0.51363	0.00028881	562.2878001019393	22.599	0.16374	22.599	22.535	22.699	0					10	5	3	0	0	0	0.03454	1	6683	6683		114.89	43.599	1	257810			34046	2200	23673	23750	34462	34462					0.004034196886323116
RTYVGSMPGR	10	Unmodified	_RTYVGSMPGR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.2877197265625	2	562.287482	1122.56041	1.8547	0.0010429	-1.8998	-0.0010682	-0.045062	-2.5338E-05	562.2865887055184	22.748	0.3604	22.748	22.6	22.961	0					15	5	4	0	0	0	0.11826	1	7759	7759		92.239	17.984	1	1449400			34047	2200	23673	23750	34463	34463					0.004034196886323116
RTYVGSMPGR	10	Unmodified	_RTYVGSMPGR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.2881469726562	2	562.287482	1122.56041	0.95353	0.00053616	-1.1334	-0.00063729	-0.17987	-0.00010114	562.287354309767	22.656	0.14539	22.656	22.605	22.75	0					8	3	3	0	0	0	0.13663	1	6797	6797		89.029	30.799	1	201270			34048	2200	23673	23750	34464	34464					0.004034196886323116
RTYVGSMPGR	10	Unmodified	_RTYVGSMPGR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2876586914062	2	562.287482	1122.56041	1.7793	0.0010005	-1.5554	-0.00087458	0.22391	0.0001259	562.286748566077	22.78	0.41295	22.78	22.671	23.084	0					21	8	3	0	0	0	0.034064	1	7638	7638		115.23	43.354	1	2478500			34049	2200	23673	23750	34465	34465					0.004034196886323116
RVADKASEK	9	Unmodified	_RVADKASEK_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2808837890625	2	502.28018	1002.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.462	1	11.462	10.962	11.962	0								0	0	0	0.00080341	1	2352	2352		128.6	43.441	1				34050	7761	23674	23751	34466	34466					0.04463670812140208
RVADRLYGVYK	11	Unmodified	_RVADRLYGVYK_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.25384521484375	3	447.254216	1338.74082	-0.42686	-0.00019092	0.17374	7.7705E-05	-0.25313	-0.00011321	447.25424571385304	26.911	0.61946	26.911	26.805	27.424	0					23	12	3	0	0	0	0.55968	1	9581	9581		39.873	5.9515	1	381880			34051	2854	23675	23752	34467	34467					0.08499841617117454
RVAEQPVM	8	Unmodified	_RVAEQPVM_					0	0	0			REV__ENST00000528986.1_1_11:121962442-121971135:-|nuORF	REV__ENST00000528986.1_1_11:121962442-121971135:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.24700927734375	2	465.247295	928.480036	-0.4396	-0.00020452	1.6405	0.00076326	1.2009	0.00055873	465.24793773798166	29.266	0.10978	29.266	29.182	29.292	0					7	4	2	0	0	0	0.79567	1	9212	9212		17.365	0	1	88964	+		34052	19977	23676	23753	34468	34468					0.012935583655917071
RVAETIFVK	9	Unmodified	_RVAETIFVK_					0	0	0		nc|ENSG00000107954|O76050-2|NEURL1;ENSG00000107954|ENST00000369780|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.8189086914062	2	531.818941	1061.62333	2.427	0.0012907	-0.94199	-0.00050097	1.485	0.00078977	531.8182842449867	27.607	0.16132	27.607	27.509	27.67	0					7	5	2	0	0	0	0.30841	1	8544	8544		49.536	10.283	1	77867			34053	2506	23677	23754	34469	34469					0.09498308748334239
RVAETIFVK	9	Unmodified	_RVAETIFVK_					0	0	0		nc|ENSG00000107954|O76050-2|NEURL1;ENSG00000107954|ENST00000369780|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8194580078125	2	531.818941	1061.62333	1.9646	0.0010448	-0.78049	-0.00041508	1.1841	0.00062974	531.8181946558982	27.854	0.26955	27.854	27.762	28.032	0					12	6	3	0	0	0	0.014413	1	9788	9788		131.62	40.84	1	469750			34054	2506	23677	23754	34470	34470					0.09498308748334239
RVAETIFVK	9	Unmodified	_RVAETIFVK_					0	0	0		nc|ENSG00000107954|O76050-2|NEURL1;ENSG00000107954|ENST00000369780|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.8193359375	2	531.818941	1061.62333	1.0059	0.00053498	-0.24439	-0.00012997	0.76155	0.00040501	531.8187912538959	27.84	0.16715	27.84	27.764	27.931	0					6	3	2	0	0	0	0.40353	1	10135	10135		41.427	8.6142	1	103540			34055	2506	23677	23754	34471	34471					0.09498308748334239
RVAPAHGLFLK	11	Unmodified	_RVAPAHGLFLK_					0	0	0		ENSG00000169972|ENST00000379031|PUSL1;ENST00000493657.1_1_1:1246183-1246756:+|nuORF;nc|ENSG00000169972|Q8N0Z8-2|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.58013916015625	3	403.580264	1207.71896	0.41268	0.00016655	-0.2122	-8.5641E-05	0.20047	8.0907E-05	403.5800798678101	26.452	0.46871	26.452	26.343	26.811	0					23	9	3	0	0	0	0.17294	1	9482	9482		77.533	44.494	1	407390			34056	6200	23678	23755	34472	34472					0.12341081659201336
RVAPEEHPV	9	Unmodified	_RVAPEEHPV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;POTEF|p.L804P|1|0.35|ENSG00000196604|chr2:130075061-130075061|A/G|missense_variant;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2752075195312	2	517.274898	1032.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.955	1	18.955	18.455	19.455	0								0	0	0	0.30504	1	5048	5048		34.173	0.65696	1				34057	1545;6995	23679	23756	34473	34473					0.02027688157704688
RVASIVDAG	9	Unmodified	_RVASIVDAG_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2505187988281	2	444.250892	886.48723	-1.1591	-0.00051493	-0.12529	-5.5661E-05	-1.2844	-0.00057059	444.2506223018977	21.665	0.2891	21.665	21.571	21.86	0					15	8	3	0	0	0	0.25716	1	6250	6250		54.776	1.8396	1	325530			34058	8923	23680	23757	34474	34474					0.039446142376732496
RVASPTSGVK	10	Unmodified	_RVASPTSGVK_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.29083251953125	2	501.290548	1000.56654	-0.11155	-5.5921E-05	-0.40567	-0.00020336	-0.51723	-0.00025928	501.2904035789667	49.327	0.11628	49.327	49.26	49.376	0					10	7	2	0	0	0	0.65051	1	17816	17816		6.3127	0	1	40309			34059	7116	23681	23758	34475	34475					0.06628261191804086
RVASPTSGVK	10	Unmodified	_RVASPTSGVK_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2908630371094	2	501.290548	1000.56654	0.17221	8.6325E-05	0.35473	0.00017782	0.52693	0.00026415	501.2907679622691	49.232	1.0942	49.232	49.021	50.115	0					79	65	2	0	0	0	0.67464	1	16398	16398		26.693	1.1189	1	73733			34060	7116	23681	23758	34476	34476					0.06628261191804086
RVCDAVKALK	10	Carbamidomethyl (C)	_RVC(Carbamidomethyl (C))DAVKALK_	RVC(1)DAVKALK		RVC(60)DAVKALK		0	1	0		ENST00000528821.5_1_12:16109876-16185684:+|nuORF;ENSG00000023697|ENST00000428559|DERA	ENST00000528821.5_1_12:16109876-16185684:+|nuORF	ENST00000528821.5_1_12:16109876-16185684:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	387.2253112792969	3	387.225381	1158.65431	-1.1917	-0.00046147	1.0122	0.00039195	-0.17953	-6.952E-05	387.22587205811294	22.172	0.16841	22.172	22.132	22.3	0					7	5	2	0	0	0	0.36432	1	6495	6495		60.167	16.516	1	124200			34061	1122	23682	23759	34477	34477	38				0.08133138790890371
RVCDAVKALK	10	Carbamidomethyl (C)	_RVC(Carbamidomethyl (C))DAVKALK_	RVC(1)DAVKALK		RVC(78)DAVKALK		0	1	0		ENST00000528821.5_1_12:16109876-16185684:+|nuORF;ENSG00000023697|ENST00000428559|DERA	ENST00000528821.5_1_12:16109876-16185684:+|nuORF	ENST00000528821.5_1_12:16109876-16185684:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.2254638671875	3	387.225381	1158.65431	0.13678	5.2964E-05	-0.3914	-0.00015156	-0.25462	-9.8597E-05	387.22538723458825	22.358	0.31411	22.358	22.253	22.567	0					12	6	3	0	0	0	0.21577	1	7570	7570		77.533	20.901	1	1202700			34062	1122	23682	23759	34478	34478	38				0.08133138790890371
RVCNPIISK	9	Unmodified	_RVCNPIISK_					0	0	0		ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	ENSG00000126803|ENST00000247207|HSPA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.29833984375	2	515.297319	1028.58008	1.6355	0.00084279	-0.80145	-0.00041298	0.8341	0.00042981	515.2968987385418	23.242	0.24039	23.242	23.145	23.386	0					9	5	2	0	0	0	0.38666	1	7658	7658		42.864	7.246	1	108450			34063	3488	23683	23760	34479	34479					0.06693795699379734
RVDDAVAAK	9	Unmodified	_RVDDAVAAK_					0	0	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685822-139687379:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.76171875	2	472.761623	943.508694	-0.02694	-1.2736E-05	-0.30822	-0.00014572	-0.33516	-0.00015845	472.76150978009196	16.081	0.096664	16.081	16.04	16.136	0					7	4	2	0	0	0	0.12278	1	3599	3599		74.165	2.2875	1	62106			34064	7965	23684	23761	34480	34480					0.03467999266365496
RVDDAVAAK	9	Unmodified	_RVDDAVAAK_					0	0	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685822-139687379:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7613525390625	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.392	1	16.392	15.892	16.892	0								0	0	0	0.043554	1	4432	4432		89.029	6.7883	1				34065	7965	23684	23761	34481	34481					0.03467999266365496
RVDDHLMGK	9	Unmodified	_RVDDHLMGK_					0	0	0		ENST00000508482.5_1_17:48797176-48828101:+|nuORF;LUC7L3|p.S389Kfs*2|3|0.28|ENSG00000108848|chr17:50750520-50750521|-/A|frameshift_variant;LUC7L3|p.S389Vfs*3|1|0.27|ENSG00000108848|chr17:50750521-50750521|A/-|frameshift_variant;LUC7L3|p.S389Kfs*4|1|0.13|ENSG00000108848|chr17:50750520-50750521|-/AA|frameshift_variant;ENSG00000108848|ENST00000505658|LUC7L3	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.774658203125	2	535.774208	1069.53386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.966	1	19.966	19.466	20.466	0								0	0	0	0.33029	1	6399	6399		29.17	4.9673	1				34066	2555	23685	23762	34482	34482					0.0018773079727907316
RVDEQHRRK	9	Unmodified	_RVDEQHRRK_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.33935546875	2	612.339427	1222.6643	-0.82442	-0.00050483	0.63575	0.00038929	-0.18868	-0.00011553	612.3399048776281	10.987	0.12235	10.987	10.953	11.075	0					9	7	2	0	0	0	0.25716	1	2088	2088		54.776	15.523	1	158510			34067	3898	23686	23763	34483	34483					0.06187462840512126
RVDGFGLLT	9	Unmodified	_RVDGFGLLT_					0	0	0		ENSG00000171160|ENST00000307450|MORN4;nc|ENSG00000171160|Q8NDC4-2|MORN4	ENSG00000171160|ENST00000307450|MORN4	ENSG00000171160|ENST00000307450|MORN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2740783691406	2	489.274367	976.53418	0.77706	0.0003802	-3.0225	-0.0014788	-2.2454	-0.0010986	489.2730499425708	36.82	0.6087	36.82	36.562	37.171	0					27	12	3	0	0	0	0.35021	1	14353	14353		45.972	1.8554	1	591770			34068	6280	23687	23764	34484	34484					0.04497473788796924
RVDGPASNLK	10	Unmodified	_RVDGPASNLK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7938842773438	2	528.793455	1055.57236	2.2615	0.0011959	-3.8672	-0.002045	-1.6057	-0.00084909	528.7917275469998	19.413	0.41424	19.413	19.262	19.676	0					22	9	3	0	0	0	0.01554	1	5861	5861		128.35	46.107	1	458920			34069	5547	23688	23765	34485	34485					0.046793597034593404
RVDGPASNLK	10	Unmodified	_RVDGPASNLK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7936401367188	2	528.793455	1055.57236	0.90645	0.00047933	-0.99532	-0.00052632	-0.088871	-4.6994E-05	528.7932062396242	19.379	0.36334	19.379	19.132	19.495	0					15	7	3	0	0	0	0.18316	1	6133	6133		81.525	7.5503	1	166770			34070	5547	23688	23765	34486	34486					0.046793597034593404
RVDGPASNLK	10	Unmodified	_RVDGPASNLK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7939453125	2	528.793455	1055.57236	0.72278	0.0003822	-1.0916	-0.00057722	-0.36879	-0.00019502	528.7931563264532	19.345	0.41226	19.345	19.096	19.508	0					20	8	3	0	0	0	0.38179	1	5956	5956		58.246	10.287	1	411960			34071	5547	23688	23765	34487	34487					0.046793597034593404
RVDITSKGK	9	Unmodified	_RVDITSKGK_					0	0	0		ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.20135498046875	3	335.201341	1002.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.101	1	15.101	14.601	15.601	0								0	0	0	0.22075	1	3908	3908		47.228	10.91	1				34072	3895	23689	23766	34488	34488					0.08100547708852446
RVDRIPGG	8	Unmodified	_RVDRIPGG_					0	0	0			REV__ENSG00000172318|ENST00000392690|B3GALT1	REV__ENSG00000172318|ENST00000392690|B3GALT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2511291503906	2	435.251226	868.487899	0.82777	0.00036029	-0.29988	-0.00013052	0.52789	0.00022976	435.25097981463324	46.185	1.3887	46.185	45.832	47.221	0					148	79	3	0	0	0	0.8006	1	17803	17803		20.482	0	1	328570	+		34073	16456	23690	23767	34489	34489					0.04839453677391248
RVDRRGSR	8	Unmodified	_RVDRRGSR_					0	0	0		ENST00000434206.1_1_3:43020805-43095327:+|nuORF	ENST00000434206.1_1_3:43020805-43095327:+|nuORF	ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2904052734375	2	501.289205	1000.56386	2.9237	0.0014656	-0.28142	-0.00014107	2.6422	0.0013245	501.2889657505489	49.269	1.5544	49.269	49.108	50.662	0					213	79	4	0	0	0	0.78978	1	19867	19867		19.36	19.36	1	866740			34074	9517	23691	23768	34490	34490					0.06359850577518955
RVDSKQMNL	9	Unmodified	_RVDSKQMNL_					0	0	0		ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15;CHST15|p.K78Efs*4|1|0.19|ENSG00000182022|chr10:124045981-124045982|-/C|frameshift_variant	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7884521484375	2	545.787315	1089.56008	1.9008	0.0010374	-1.1737	-0.00064056	0.72711	0.00039685	545.7868694814018	41.167	0.36292	41.167	40.922	41.285	0					23	14	3	0	0	0	0.55379	1	16150	16150		26.693	1.1189	1	160640			34075	6874	23692	23769	34491	34491					0.018879999687896998
RVFKEENQK	9	Unmodified	_RVFKEENQK_					0	0	0		ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF;ENST00000534269.5_1_6:136590404-136595119:-|nuORF	ENST00000505813.1_1_5:110284092-110284650:-|nuORF	ENST00000505813.1_1_5:110284092-110284650:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.3204956054688	2	589.319837	1176.62512	1.0252	0.00060414	0.043785	2.5804E-05	1.0689	0.00062995	589.3197618716879	15.217	0.13478	15.217	15.162	15.297	0					5	3	2	0	0	0	0.079477	1	3888	3888		78.264	10.77	1	187780			34076	1141	23693	23770	34492	34492					0.0438731776628174
RVFSWSQAK	9	Unmodified	_RVFSWSQAK_					0	0	0		ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7992553710938	2	554.79854	1107.58253	1.4159	0.00078556	-0.55417	-0.00030745	0.86177	0.00047811	554.7983024800515	27.755	0.21373	27.755	27.642	27.856	0					12	6	2	0	0	0	0.13109	1	8575	8575		72.243	20.908	1	166060			34077	8428	23694	23771	34493	34493					0.03303967428701071
RVFSWSQAK	9	Unmodified	_RVFSWSQAK_					0	0	0		ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7991943359375	2	554.79854	1107.58253	1.6518	0.00091642	-1.3245	-0.00073483	0.3273	0.00018159	554.7977778795201	27.987	0.88087	27.987	27.897	28.778	0					32	18	4	0	0	0	0.026848	1	10201	10201		112.11	18.912	1	696400			34078	8428	23694	23771	34494	34494					0.03303967428701071
RVFSWSQAK	9	Unmodified	_RVFSWSQAK_					0	0	0		ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7982177734375	2	554.79854	1107.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.819	1	27.819	27.319	28.319	0								0	0	0	0.091378	1	9151	9151		74.165	17.444	1				34079	8428	23694	23771	34495	34495					0.03303967428701071
RVFSWSQAK	9	Unmodified	_RVFSWSQAK_					0	0	0		ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.799072265625	2	554.79854	1107.58253	1.0103	0.00056052	-0.39592	-0.00021966	0.6144	0.00034087	554.7984698089903	27.914	0.56208	27.914	27.813	28.375	0					20	11	4	0	0	0	0.015992	1	10041	10041		128.6	63.137	1	594220			34080	8428	23694	23771	34496	34496					0.03303967428701071
RVFTEGTCK	9	Unmodified	_RVFTEGTCK_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7630615234375	2	520.763309	1039.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.874	1	19.874	19.374	20.374	0								0	0	0	0.17415	1	6074	6074		54.722	17.563	1				34081	4230	23695	23772	34497	34497					-0.006110739512678265
RVFTGVVTK	9	Unmodified	_RVFTGVVTK_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.80645751953125	2	503.805834	1005.59712	0.63178	0.0003183	-0.26551	-0.00013377	0.36627	0.00018453	503.8057224031727	23.625	0.22958	23.625	23.538	23.768	0					11	5	4	0	0	0	0.032383	1	7838	7838		106.68	24.443	1	296000			34082	391	23696	23773	34498	34498					0.09454039576860396
RVFTGVVTK	9	Unmodified	_RVFTGVVTK_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.8057861328125	2	503.805834	1005.59712	0.75554	0.00038065	-1.3917	-0.00070116	-0.63619	-0.00032051	503.8054148999283	23.608	0.31948	23.608	23.526	23.846	0					10	7	2	0	0	0	0.032383	1	7836	7836		106.68	21.768	1	2654200			34083	391	23696	23773	34499	34499					0.09454039576860396
RVFTGVVTK	9	Unmodified	_RVFTGVVTK_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.8056945800781	2	503.805834	1005.59712	0.087822	4.4245E-05	-0.42039	-0.0002118	-0.33257	-0.00016755	503.80560219209883	23.57	0.41873	23.57	23.462	23.881	0					17	8	4	0	0	0	0.046074	1	8124	8124		96.665	24.788	1	2165100			34084	391	23696	23773	34500	34500					0.09454039576860396
RVFTGVVTK	9	Unmodified	_RVFTGVVTK_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.80560302734375	2	503.805834	1005.59712	-0.077164	-3.8876E-05	-0.087025	-4.3843E-05	-0.16419	-8.2719E-05	503.80568420010724	23.364	0.27548	23.364	23.267	23.542	0					10	6	3	0	0	0	0.19952	1	7128	7128		61.691	10.356	1	293940			34085	391	23696	23773	34501	34501					0.09454039576860396
RVFTGVVTK	9	Unmodified	_RVFTGVVTK_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.80572509765625	2	503.805834	1005.59712	-0.413	-0.00020807	0.12462	6.2787E-05	-0.28838	-0.00014529	503.80589955964706	23.546	0.51177	23.546	23.385	23.897	0					21	10	4	0	0	0	0.032181	1	7984	7984		106.88	24.64	1	2492900			34086	391	23696	23773	34502	34502					0.09454039576860396
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.8472900390625	2	596.847176	1191.6798	0.7022	0.00041911	-0.67666	-0.00040386	0.025542	1.5245E-05	596.8469311161465	32.789	0.36189	32.789	32.668	33.03	0					31	9	5	0	0	0	7.4547E-05	1	12063	12063		141.91	101.85	1	2829900			34087	2967	23697	23774	34503	34503					0.09162613313355905
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.8472290039062	2	596.847176	1191.6798	0.077305	4.6139E-05	-0.3314	-0.0001978	-0.2541	-0.00015166	596.8471336732907	32.811	0.42163	32.811	32.697	33.119	0					29	11	4	0	0	0	0.087345	1	12073	12073		102.95	58.578	1	798120			34088	2967	23697	23774	34504	34504					0.09162613313355905
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.8477783203125	2	596.847176	1191.6798	-0.56056	-0.00033457	0.59674	0.00035616	0.036175	2.1591E-05	596.8476709646529	32.613	0.42153	32.613	32.49	32.912	0					44	16	4	0	0	0	0.094298	1	10866	10866		100.82	77.777	1	631010			34089	2967	23697	23774	34505	34505					0.09162613313355905
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	398.23431396484375	3	398.233876	1191.6798	-1.303	-0.00051892	1.0285	0.00040959	-0.27454	-0.00010933	398.234441207596	32.613	0.25298	32.613	32.519	32.772	0					21	10	3	0	0	0	0.35425	1	10881	10881		56.551	29.503	1	196190			34090	2967	23697	23774	34506	34506					0.09162613313355905
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.2337951660156	3	398.233876	1191.6798	0.70681	0.00028148	-1.1286	-0.00044945	-0.42181	-0.00016798	398.2335365037234	32.78	0.46933	32.78	32.639	33.109	0					36	11	5	0	0	0	0.10814	1	12469	12469		87.713	47.655	1	1883200			34091	2967	23697	23774	34507	34507					0.09162613313355905
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.8486328125	2	596.847176	1191.6798	0.48815	0.00029135	-0.34219	-0.00020423	0.14596	8.7114E-05	596.847051538441	32.545	0.38641	32.545	32.476	32.862	0					29	11	4	0	0	0	0.086726	1	11322	11322		94.409	50.292	1	565520			34092	2967	23697	23774	34508	34508					0.09162613313355905
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	398.23370361328125	3	398.233876	1191.6798	-0.14345	-5.7127E-05	-0.03647	-1.4524E-05	-0.17992	-7.1651E-05	398.2338831612837	32.582	0.22786	32.582	32.476	32.703	0					11	7	2	0	0	0	0.43096	1	11341	11341		49.28	27.594	1	117430			34093	2967	23697	23774	34509	34509					0.09162613313355905
RVFVVGVGMTK	11	Unmodified	_RVFVVGVGMTK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.2337951660156	3	398.233876	1191.6798	0.3772	0.00015022	-0.78772	-0.0003137	-0.41052	-0.00016348	398.23363061979956	32.762	0.26794	32.762	32.607	32.875	0					22	5	5	0	0	0	0.16041	1	12369	12369		79.036	40.282	1	2692300			34094	2967	23697	23774	34510	34510					0.09162613313355905
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(79)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.84521484375	2	604.844633	1207.67471	-0.44908	-0.00027162	0.48384	0.00029265	0.034761	2.1025E-05	604.8450735913269	28.287	0.89754	28.287	28.07	28.968	0					49	22	5	0	0	0	0.16013	1	9965	9965		79.07	33.098	1	1806900			34095	2967	23697	23775	34511	34511		129			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(49)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	605.345947265625	2	604.844633	1207.67471	-0.60008	-0.00036296	0.51545	0.00031177	-0.084631	-5.1189E-05	604.8450156948122	28.017	0.33779	28.017	27.931	28.269	0					29	12	4	0	0	0	0.44025	1	8975	8975		48.602	21.554	1	338470			34096	2967	23697	23775	34512	34512		129			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(79)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.8446655273438	2	604.844633	1207.67471	0.71055	0.00042977	-0.73478	-0.00044443	-0.024236	-1.4659E-05	604.8442808091405	28.232	0.40604	28.232	28.126	28.532	0					26	8	4	0	0	0	0.16013	1	10331	10331		79.07	39.817	1	2629200			34097	2967	23697	23775	34513	34513		129			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(60)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.8441772460938	2	604.844633	1207.67471	-1.9146	-0.0011581	2.0071	0.001214	0.092445	5.5915E-05	604.8458323981972	28.065	0.34453	28.065	27.981	28.325	0					17	8	3	0	0	0	0.32407	1	9252	9252		59.931	36.408	1	407810			34098	2967	23697	23775	34514	34514		129			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(48)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	403.5653076171875	3	403.565514	1207.67471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.083	1	28.083	27.583	28.583	0								0	0	0	0.32833	1	9273	9273		48.188	8.3148	1				34099	2967	23697	23775	34515	34515		129			0.07918309450724337
RVGEFCHNR	9	Carbamidomethyl (C)	_RVGEFC(Carbamidomethyl (C))HNR_	RVGEFC(1)HNR		RVGEFC(58)HNR		0	1	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.1893310546875	3	392.189329	1173.54616	0.38902	0.00015257	-0.5708	-0.00022386	-0.18178	-7.1291E-05	392.1891274529873	16.904	0.21154	16.904	16.801	17.013	0					10	4	3	0	0	0	0.22823	1	4940	4940		58.246	21.799	1	589390			34100	3687	23698	23776	34516	34516	159				-0.03367232739674364
RVGEVGQSK	9	Unmodified	_RVGEVGQSK_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENST00000470601.5_1_3:51977371-51978822:+|nuORF	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2679443359375	2	480.267073	958.519593	3.4611	0.0016622	-3.0986	-0.0014882	0.36245	0.00017407	480.2657244027664	14.011	0.082743	14.011	13.977	14.059	0					8	4	2	0	0	0	0.073657	1	2964	2964		86.882	10.712	1	108580			34101	1196	23699	23777	34517	34517					0.038674016406730516
RVGEVGQSK	9	Unmodified	_RVGEVGQSK_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENST00000470601.5_1_3:51977371-51978822:+|nuORF	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2667236328125	2	480.267073	958.519593	-0.11086	-5.3242E-05	-0.54292	-0.00026075	-0.65378	-0.00031399	480.2668249232285	14.242	0.25343	14.242	14.184	14.437	0					10	5	4	0	0	0	0.013298	1	3660	3660		133.99	15.25	1	610870			34102	1196	23699	23777	34518	34518					0.038674016406730516
RVGEVGQSK	9	Unmodified	_RVGEVGQSK_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENST00000470601.5_1_3:51977371-51978822:+|nuORF	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.26666259765625	2	480.267073	958.519593	0.048072	2.3087E-05	-1.1082	-0.00053222	-1.0601	-0.00050913	480.26658890708563	14.038	0.12079	14.038	13.965	14.085	0					6	4	2	0	0	0	0.073657	1	2916	2916		86.882	1.7207	1	132220			34103	1196	23699	23777	34519	34519					0.038674016406730516
RVGMSLVAL	9	Unmodified	_RVGMSLVAL_					0	0	0		ENSG00000187475|ENST00000338379|H1-6	ENSG00000187475|ENST00000338379|H1-6	ENSG00000187475|ENST00000338379|H1-6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2794189453125	2	473.281137	944.547722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.344	1	40.344	39.844	40.844	0								0	0	0	0.3368	1	15376	15376		27.882	1.0861	1				34104	7195	23700	23778	34520	34520					0.07323008296407352
RVGNGPLPRQ	10	Unmodified	_RVGNGPLPRQ_					0	0	0			REV__KMT2B|p.P174Qfs*20|1|0.38|ENSG00000272333|chr19:35719862-35719862|C/-|frameshift_variant	REV__KMT2B|p.P174Qfs*20|1|0.38|ENSG00000272333|chr19:35719862-35719862|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.31640625	2	547.314889	1092.61522	0.33915	0.00018562	2.6011	0.0014236	2.9402	0.0016092	547.3164889007235	27.397	0.16804	27.397	27.338	27.506	0					7	3	3	0	0	0	0.67464	1	9934	9934		26.693	0	1	239560	+		34105	20793	23701	23779	34521	34521					0.07262174551533462
RVGNTVSLE	9	Unmodified	_RVGNTVSLE_					0	0	0		ENST00000420329.6_1_15:91185432-91185957:+|nuORF	ENST00000420329.6_1_15:91185432-91185957:+|nuORF	ENST00000420329.6_1_15:91185432-91185957:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7664489746094	2	487.766906	973.519259	-0.081626	-3.9814E-05	-0.7101	-0.00034636	-0.79173	-0.00038618	487.76677728582456	25.468	0.16091	25.468	25.358	25.519	0					5	3	2	0	0	0	0.25716	1	9056	9056		54.776	0	1	88838			34106	9393	23702	23780	34522	34522					0.031439819208117115
RVGTHIRAK	9	Unmodified	_RVGTHIRAK_					0	0	0		ENST00000488095.1_1_14:73396322-73396475:-|nuORF;ENSG00000130255|ENST00000347512|RPL36	ENST00000488095.1_1_14:73396322-73396475:-|nuORF	ENST00000488095.1_1_14:73396322-73396475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.5489196777344	3	346.549075	1036.6254	0.34257	0.00011872	-0.80588	-0.00027928	-0.46332	-0.00016056	346.5488476356487	14.192	0.11777	14.192	14.133	14.251	0					4	2	2	0	0	0	0.3269	1	3638	3638		47.96	0	1	334020			34107	3631	23703	23781	34523	34523					0.10854782276783226
RVGTVIGSNK	10	Unmodified	_RVGTVIGSNK_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8043823242188	2	515.803823	1029.59309	1.2236	0.00063112	0.088122	4.5453E-05	1.3117	0.00067657	515.8036372402596	18.398	0.1451	18.398	18.339	18.485	0					9	3	3	0	0	0	0.25899	1	5382	5382		72.243	2.6156	1	1063600			34108	4582;9337	23704	23782	34524	34524					0.07947950083121214
RVGTVIGSNK	10	Unmodified	_RVGTVIGSNK_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.80419921875	2	515.803823	1029.59309	0.17246	8.8958E-05	0.85859	0.00044286	1.0311	0.00053182	515.8040622993159	18.329	0.16702	18.329	18.271	18.438	0					8	3	3	0	0	0	0.12383	1	5477	5477		91.265	16.222	1	1016600			34109	4582;9337	23704	23782	34525	34525					0.07947950083121214
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.5752868652344	3	409.575401	1225.70437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.336	1	20.336	19.836	20.836	0								0	0	0	0.049082	1	6292	6292		91.265	47.614	1				34110	9153	23705	23783	34526	34526					0.10055009511074786
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.5752868652344	3	409.575401	1225.70437	0.05347	2.19E-05	-0.37664	-0.00015426	-0.32317	-0.00013236	409.5752418866036	20.187	0.81687	20.187	20.079	20.896	0					34	16	4	0	0	0	0.062358	1	6495	6495		105.17	67.657	1	350660			34111	9153	23705	23783	34527	34527					0.10055009511074786
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.57537841796875	3	409.575401	1225.70437	-0.5045	-0.00020663	0.1547	6.336E-05	-0.34981	-0.00014327	409.575494468704	20.22	0.91623	20.22	20.044	20.96	0					38	18	4	0	0	0	0.3029	1	6388	6388		66.92	24.582	1	514200			34112	9153	23705	23783	34528	34528					0.10055009511074786
RVIAKALEK	9	Unmodified	_RVIAKALEK_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.3353271484375	2	514.334759	1026.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.561	1	18.561	18.061	19.061	0								0	0	0	0.12601	1	5453	5453		65.465	12.529	1				34113	2021	23706	23784	34529	34529					0.14270301502278926
RVIAKALEK	9	Unmodified	_RVIAKALEK_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.2255859375	3	343.225598	1026.65496	0.67923	0.00023313	-0.59026	-0.00020259	0.088969	3.0536E-05	343.2253570344154	18.522	0.13948	18.522	18.473	18.612	0					8	3	3	0	0	0	0.037924	1	5445	5445		117.53	26.261	1	729370			34114	2021	23706	23784	34530	34530					0.14270301502278926
RVIAKALEK	9	Unmodified	_RVIAKALEK_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.2255554199219	3	343.225598	1026.65496	0.35404	0.00012152	-0.56887	-0.00019525	-0.21483	-7.3734E-05	343.2253636240409	18.519	0.11671	18.519	18.411	18.527	0					6	2	3	0	0	0	0.18416	1	5689	5689		89.029	22.067	1	175230			34115	2021	23706	23784	34531	34531					0.14270301502278926
RVIAKALEK	9	Unmodified	_RVIAKALEK_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3348388671875	2	514.334759	1026.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.492	1	18.492	17.992	18.992	0								0	0	0	0.058887	1	5685	5685		83.647	12.831	1				34116	2021	23706	23784	34532	34532					0.14270301502278926
RVIAKALEK	9	Unmodified	_RVIAKALEK_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.2254943847656	3	343.225598	1026.65496	-0.029557	-1.0145E-05	-0.13943	-4.7858E-05	-0.16899	-5.8002E-05	343.22553276672426	18.48	0.3151	18.48	18.37	18.685	0					10	6	3	0	0	0	0.07136	1	5531	5531		104.01	22.489	1	356080			34117	2021	23706	23784	34533	34533					0.14270301502278926
RVIDILRGK	9	Unmodified	_RVIDILRGK_					0	0	0		ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.232421875	3	357.232864	1068.67676	0.44022	0.00015726	-0.7028	-0.00025106	-0.26258	-9.3802E-05	357.23263789419997	28.02	0.29401	28.02	27.934	28.228	0					15	10	2	0	0	0	0.28504	1	8721	8721		51.528	1.9917	1	53515			34118	1434	23707	23785	34534	34534					0.14517106250832512
RVIDILRGK	9	Unmodified	_RVIDILRGK_					0	0	0		ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.2327575683594	3	357.232864	1068.67676	-0.059716	-2.1332E-05	-0.056896	-2.0325E-05	-0.11661	-4.1658E-05	357.2328170579121	28.169	0.71445	28.169	28.01	28.724	0					29	14	4	0	0	0	0.11411	1	10182	10182		76.17	23.081	1	1576100			34119	1434	23707	23785	34535	34535					0.14517106250832512
RVIDVFAM	8	Unmodified	_RVIDVFAM_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;PSMD14|p.V67I|1|0.04|ENSG00000115233|chr2:161367862-161367862|G/A|missense_variant	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7596435546875	2	475.760038	949.505523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.405	1	37.405	36.905	37.905	0								0	0	0	1.7419	1	14177	14177		33.516	0	1				34120	2891	23708	23786	34536	34536					0.028750328880278175
RVIKLAHAK	9	Unmodified	_RVIKLAHAK_					0	0	0		nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant;MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;MED23|p.T545I|1|0.21|ENSG00000112282|chr6:131604300-131604300|G/A|missense_variant	nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-2|MED23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.8975524902344	3	345.897704	1034.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.418	1	16.418	15.918	16.918	0								0	0	0	0.23111	1	4689	4689		46.457	13.644	1				34121	2729	23709	23787	34537	34537					0.15533427459013183
RVITEEEKNFK	11	Unmodified	_RVITEEEKNFK_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.920654296875	3	464.920903	1391.74088	0.70561	0.00032805	-1.1297	-0.00052523	-0.42411	-0.00019718	464.9203983726973	21.781	0.16955	21.781	21.67	21.84	0					6	3	2	0	0	0	0.47734	1	7156	7156		45.891	24.11	1	961360			34122	5997	23710	23788	34538	34538					0.06067796826459926
RVIYKVWTQ	9	Unmodified	_RVIYKVWTQ_					0	0	0			REV__nc|ENSG00000115009|P78556-2|CCL20	REV__nc|ENSG00000115009|P78556-2|CCL20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.8472290039062	2	596.84549	1191.67643	1.8141	0.0010827	0.7562	0.00045133	2.5702	0.001534	596.8460905609517	32.763	0.36517	32.763	32.607	32.972	0					32	7	6	0	0	0	0.24334	1	12367	12367		58.782	5.4305	1	9853000	+		34123	14094	23711	23789	34539	34539					0.08825686530985877
RVIYKVWTQ	9	Unmodified	_RVIYKVWTQ_					0	0	0			REV__nc|ENSG00000115009|P78556-2|CCL20	REV__nc|ENSG00000115009|P78556-2|CCL20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	596.8472290039062	2	596.84549	1191.67643	3.1658	0.0018895	-0.69342	-0.00041386	2.4724	0.0014756	596.8451998900405	32.745	1.0434	32.745	32.59	33.633	0					49	21	5	0	0	0	0.19952	1	12359	12359		64.207	4.089	1	9419900	+		34124	14094	23711	23789	34540	34540					0.08825686530985877
RVKEPAQCML	10	Carbamidomethyl (C)	_RVKEPAQC(Carbamidomethyl (C))ML_	RVKEPAQC(1)ML		RVKEPAQC(53)ML		0	1	0			REV__FLRT3|p.I542Rfs*9|1|0.03|ENSG00000125848|chr20:14325882-14325883|-/CTCTATCC|frameshift_variant	REV__FLRT3|p.I542Rfs*9|1|0.03|ENSG00000125848|chr20:14325882-14325883|-/CTCTATCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	616.3192749023438	2	616.317925	1230.6213	3.0324	0.0018689	-0.93801	-0.00057811	2.0944	0.0012908	616.3173413274152	12.955	0.38674	12.955	12.756	13.143	0					24	8	4	0	0	0	0.43008	1	2873	2873		52.937	23.767	1	2040100	+		34125	14444	23712	23790	34541	34541	539				0.015211886765655436
RVKLPSGSK	9	Unmodified	_RVKLPSGSK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000525232.5_1_8:146016635-146016902:-|nuORF;ENST00000430538.1_1_21:31635868-31636186:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.303466796875	2	486.303458	970.592364	0.36744	0.00017869	-0.52199	-0.00025385	-0.15455	-7.5158E-05	486.303250404749	17.08	0.26348	17.08	16.87	17.134	0					10	6	2	0	0	0	0.12834	1	4767	4767		72.879	23.343	1	82196			34126	5399	23713	23791	34542	34542					0.10589155434104214
RVLDALVAR	9	Unmodified	_RVLDALVAR_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.8178405761719	2	506.816733	1011.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.502	1	30.502	30.002	31.002	0								0	0	0	0.084509	1	9726	9726		76.17	10.704	1				34127	6833	23714	23792	34543	34543					0.1135684432541666
RVLDALVAR	9	Unmodified	_RVLDALVAR_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.81671142578125	2	506.816733	1011.61891	0.85408	0.00043286	-0.87502	-0.00044348	-0.020944	-1.0615E-05	506.8162395625379	30.762	0.35814	30.762	30.624	30.982	0					16	8	3	0	0	0	0.037712	1	11116	11116		101.46	28.581	1	599330			34128	6833	23714	23792	34544	34544					0.1135684432541666
RVLDALVAR	9	Unmodified	_RVLDALVAR_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.8162841796875	2	506.816733	1011.61891	0.15307	7.7577E-05	-0.43718	-0.00022157	-0.28411	-0.00014399	506.8165152204291	30.699	0.27958	30.699	30.601	30.88	0					16	6	3	0	0	0	0.10506	1	11537	11537		78.264	1.4896	1	573040			34129	6833	23714	23792	34545	34545					0.1135684432541666
RVLDRQDE	8	Unmodified	_RVLDRQDE_					0	0	0			REV__ENST00000498762.1_1_X:55748624-55758085:+|nuORF	REV__ENST00000498762.1_1_X:55748624-55758085:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7678833007812	2	515.767437	1029.52032	1.5097	0.00077866	-0.84873	-0.00043775	0.66098	0.00034091	515.7669246048483	17.572	0.37089	17.572	17.363	17.734	0					13	7	2	0	0	0	0.67394	1	5108	5108		37.159	4.3467	1	554640	+		34130	19802	23715	23793	34546	34546					0.006741962897194753
RVLDVTKKK	9	Unmodified	_RVLDVTKKK_					0	0	0		nc|ENSG00000164039|Q9BUT1-2|BDH2;ENST00000492366.5_1_4:104007535-104017411:-|nuORF;ENSG00000164039|ENST00000296424|BDH2;ENST00000513518.1_1_4:104013755-104017411:-|nuORF	nc|ENSG00000164039|Q9BUT1-2|BDH2	nc|ENSG00000164039|Q9BUT1-2|BDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8533935546875	2	543.853316	1085.69208	1.1605	0.00063112	-0.76236	-0.00041461	0.39809	0.0002165	543.8528643132408	15.686	0.16896	15.686	15.642	15.811	0					11	7	2	0	0	0	0.19891	1	3458	3458		63.534	36.841	1	266930			34131	5642	23716	23794	34547	34547					0.152659730480309
RVLDVTKKK	9	Unmodified	_RVLDVTKKK_					0	0	0		nc|ENSG00000164039|Q9BUT1-2|BDH2;ENST00000492366.5_1_4:104007535-104017411:-|nuORF;ENSG00000164039|ENST00000296424|BDH2;ENST00000513518.1_1_4:104013755-104017411:-|nuORF	nc|ENSG00000164039|Q9BUT1-2|BDH2	nc|ENSG00000164039|Q9BUT1-2|BDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.9049072265625	3	362.904636	1085.69208	-0.94887	-0.00034435	1.521	0.00055199	0.57215	0.00020764	362.9051605829496	15.717	0.072527	15.717	15.69	15.762	0					4	2	2	0	0	0	0.18505	1	3643	3643		63.426	22	1	170800			34132	5642	23716	23794	34548	34548					0.152659730480309
RVLEAAVAAK	10	Unmodified	_RVLEAAVAAK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1;nc|ENSG00000111361|Q14232-2|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.3170776367188	2	514.316566	1026.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.908	1	21.908	21.408	22.408	0								0	0	0	0.053304	1	7034	7034		90.149	21.362	1				34133	2664	23717	23795	34549	34549					0.10633424605566688
RVLEAAVAAK	10	Unmodified	_RVLEAAVAAK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1;nc|ENSG00000111361|Q14232-2|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3165893554688	2	514.316566	1026.61858	0.68748	0.00035358	-0.98683	-0.00050754	-0.29935	-0.00015396	514.3162588721136	21.784	0.11621	21.784	21.725	21.842	0					4	2	2	0	0	0	0.31894	1	7289	7289		65.157	13.822	1	280420			34134	2664	23717	23795	34550	34550					0.10633424605566688
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.2325134277344	3	362.232752	1083.67643	0.45874	0.00016617	-0.70311	-0.00025469	-0.24437	-8.8518E-05	362.2325151542739	18.757	0.15339	18.757	18.685	18.839	0					10	4	3	0	0	0	0.032181	1	4718	4718		106.88	36.064	1	256200			34135	6160	23718	23796	34551	34551					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.23272705078125	3	362.232752	1083.67643	0.73387	0.00026583	-0.81391	-0.00029483	-0.080044	-2.8995E-05	362.2324317983834	19.085	0.35702	19.085	18.965	19.322	0					19	8	5	0	0	0	0.046074	1	5687	5687		96.665	5.3998	1	2294500			34136	6160	23718	23796	34552	34552					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.845703125	2	542.84549	1083.67643	0.32249	0.00017506	0.26158	0.000142	0.58407	0.00031706	542.8455896220981	19.08	0.17566	19.08	18.993	19.169	0					10	4	3	0	0	0	0.0079272	1	5682	5682		141.52	12.659	1	2139600			34137	6160	23718	23796	34553	34553					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.23284912109375	3	362.232752	1083.67643	-0.94278	-0.00034151	0.60917	0.00022066	-0.33361	-0.00012085	362.23300118886203	18.766	0.12778	18.766	18.707	18.835	0					10	4	3	0	0	0	0.037712	1	4953	4953		101.46	43.23	1	275600			34138	6160	23718	23796	34554	34554					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.8458251953125	2	542.84549	1083.67643	-0.17291	-9.3861E-05	0.49047	0.00026625	0.31757	0.00017239	542.8456498186493	18.758	0.20145	18.758	18.697	18.898	0					8	6	2	0	0	0	0.079477	1	4962	4962		88.177	23.97	1	306530			34139	6160	23718	23796	34555	34555					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.845703125	2	542.84549	1083.67643	0.31888	0.0001731	0.33338	0.00018097	0.65226	0.00035408	542.845731117218	19.009	0.21467	19.009	18.9	19.115	0					12	4	4	0	0	0	0.016146	1	5925	5925		123.21	16.793	1	2539700			34140	6160	23718	23796	34556	34556					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.2332458496094	3	362.232752	1083.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.848	1	18.848	18.348	19.348	0								0	0	0	0.073134	1	5001	5001		79.489	31.53	1				34141	6160	23718	23796	34557	34557					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.2327575683594	3	362.232752	1083.67643	-0.098689	-3.5748E-05	0.18673	6.7638E-05	0.088037	3.189E-05	362.23276921714006	18.807	0.18032	18.807	18.761	18.941	0					6	4	2	0	0	0	0.010427	1	4992	4992		140.11	57.362	1	163710			34142	6160	23718	23796	34558	34558					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.2327880859375	3	362.232752	1083.67643	-0.069881	-2.5313E-05	0.34011	0.0001232	0.27023	9.7887E-05	362.23290664294626	18.968	0.16571	18.968	18.897	19.063	0					7	3	3	0	0	0	0.026656	1	5785	5785		112.3	18.698	1	355110			34143	6160	23718	23796	34559	34559					0.1379368653099391
RVLESVQKK	9	Unmodified	_RVLESVQKK_					0	0	0		SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant;SIN3B|p.F776Lfs*21|1|0.31|ENSG00000127511|chr19:16869880-16869880|T/-|frameshift_variant;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant	SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8924865722656	3	362.892507	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.391	1	16.391	15.891	16.891	0								0	0	0	0.0012548	1	4431	4431		125.71	21.289	1				34144	3507	23719	23797	34560	34560					0.11629096151318663
RVLESVQKK	9	Unmodified	_RVLESVQKK_					0	0	0		SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant;SIN3B|p.F776Lfs*21|1|0.31|ENSG00000127511|chr19:16869880-16869880|T/-|frameshift_variant;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant	SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8353271484375	2	543.835123	1085.65569	0.32301	0.00017567	0.16574	9.0137E-05	0.48876	0.0002658	543.8351886552009	16.305	0.1165	16.305	16.247	16.363	0					6	2	3	0	0	0	0.015496	1	4646	4646		129.42	16.01	1	381720			34145	3507	23719	23797	34561	34561					0.11629096151318663
RVLESVQKK	9	Unmodified	_RVLESVQKK_					0	0	0		SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant;SIN3B|p.F776Lfs*21|1|0.31|ENSG00000127511|chr19:16869880-16869880|T/-|frameshift_variant;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant	SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.8924865722656	3	362.892507	1085.65569	1.1293	0.00040983	-1.3866	-0.00050319	-0.25727	-9.336E-05	362.89195406735325	16.292	0.36613	16.292	16.234	16.6	0					11	7	3	0	0	0	0.0017279	1	4494	4494		152.06	39.954	1	631990			34146	3507	23719	23797	34562	34562					0.11629096151318663
RVLGKSGIPLK	11	Unmodified	_RVLGKSGIPLK_					0	0	0		ENST00000382247.5_1_4:17805583-17805688:-|nuORF	ENST00000382247.5_1_4:17805583-17805688:-|nuORF	ENST00000382247.5_1_4:17805583-17805688:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.9240417480469	3	389.923919	1166.74993	0.43761	0.00017063	-0.058122	-2.2663E-05	0.37949	0.00014797	389.92394704090873	23.346	0.26661	23.346	23.229	23.496	0					11	5	3	0	0	0	0.55773	1	8042	8042		40.015	11.439	1	108500			34147	9122	23720	23798	34563	34563					0.17322234973448758
RVLGQYSG	8	Unmodified	_RVLGQYSG_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;SEZ6|p.P892Hfs*50|1|0.15|ENSG00000063015|chr17:28957062-28957062|G/-|frameshift_variant;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.23724365234375	2	440.237784	878.461016	-0.2846	-0.00012529	-0.91538	-0.00040298	-1.2	-0.00052827	440.23735728790996	15.514	0.11289	15.514	15.435	15.548	0					7	4	2	0	0	0	0.8006	1	3383	3383		20.482	1.1219	1	68879			34148	1335	23721	23799	34564	34564					0.01692345066192047
RVLQAVAAT	9	Unmodified	_RVLQAVAAT_					0	0	0		ENST00000543450.1_1_11:71779123-71779267:-|nuORF	ENST00000543450.1_1_11:71779123-71779267:-|nuORF	ENST00000543450.1_1_11:71779123-71779267:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7821960449219	2	464.782359	927.550165	0.12709	5.9071E-05	-0.91043	-0.00042315	-0.78333	-0.00036408	464.78189640659747	18.317	0.14835	18.317	18.221	18.369	0					6	3	2	0	0	0	0.47038	1	5346	5346		35.618	1.4457	1	145790			34149	10560	23722	23800	34565	34565					0.08349180025686564
RVLQPYNK	8	Unmodified	_RVLQPYNK_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D;SEMA3D|p.I482*|2|0.07|ENSG00000153993|chr7:85020292-85020293|-/TA|frameshift_variant;SEMA3D|p.S481Rfs*88|1|0.11|ENSG00000153993|chr7:85020293-85020294|-/CTTT|frameshift_variant	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2959289550781	2	509.295633	1016.57671	-0.39579	-0.00020157	0.45328	0.00023086	0.057498	2.9284E-05	509.29610387483615	23.391	0.19091	23.391	23.324	23.515	0					10	6	2	0	0	0	0.63077	1	7014	7014		25.45	0	1	78528			34150	5069	23723	23801	34566	34566					0.06908868917025757
RVLSSIEQK	9	Unmodified	_RVLSSIEQK_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.312255859375	2	530.31148	1058.60841	0.43291	0.00022958	0.53691	0.00028473	0.96982	0.00051431	530.3117018759391	20.031	0.14012	20.031	19.961	20.101	0					8	4	3	0	0	0	0.029571	1	5295	5295		109.44	0	1	307530			34151	6576	23724	23802	34567	34567					0.08144816880326289
RVLSSIEQK	9	Unmodified	_RVLSSIEQK_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3114624023438	2	530.31148	1058.60841	-0.042833	-2.2715E-05	1.2715	0.00067429	1.2287	0.00065158	530.312122855244	20.086	0.13071	20.086	20.031	20.162	0					10	4	3	0	0	0	0.026848	1	5547	5547		112.11	0	1	359990			34152	6576	23724	23802	34568	34568					0.08144816880326289
RVLSSIEQK	9	Unmodified	_RVLSSIEQK_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.3118286132812	2	530.31148	1058.60841	-1.206	-0.00063957	1.7245	0.00091453	0.51849	0.00027496	530.3124745337553	20.125	0.14419	20.125	20.076	20.22	0					8	3	3	0	0	0	0.02953	1	5604	5604		109.48	0	1	232000			34153	6576	23724	23802	34569	34569					0.08144816880326289
RVLSTSSTL	9	Unmodified	_RVLSTSSTL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.27703857421875	2	482.277106	962.53966	-0.56124	-0.00027068	0.29197	0.00014081	-0.26927	-0.00012987	482.2772821994255	27.547	0.21061	27.547	27.439	27.649	0					7	4	2	0	0	0	0.25761	1	10000	10000		54.722	6.8067	1	308630			34154	3791	23725	23803	34570	34570					0.056891525806122445
RVMDLICEK	9	Unmodified	_RVMDLICEK_					0	0	0		ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.7891845703125	2	553.788469	1105.56239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.838	1	32.838	32.338	33.338	0								0	0	0	0.1347	1	12515	12515		63.426	1.3191	1				34155	2444	23726	23804	34571	34571					0.013827123822238718
RVMEKGSLK	9	Unmodified	_RVMEKGSLK_					0	0	0		PTPN1|p.G377Efs*27|2|0.27|ENSG00000196396|chr20:50581301-50581301|G/-|frameshift_variant;ENSG00000196396|ENST00000371621|PTPN1	PTPN1|p.G377Efs*27|2|0.27|ENSG00000196396|chr20:50581301-50581301|G/-|frameshift_variant	PTPN1|p.G377Efs*27|2|0.27|ENSG00000196396|chr20:50581301-50581301|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3035888671875	2	524.302601	1046.59065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.073	1	16.073	15.573	16.573	0								0	0	0	0.00063696	1	4377	4377		146.79	26.164	1				34156	7355	23727	23805	34572	34572					0.06921778353807895
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8323364257812	2	543.83186	1085.64917	1.8207	0.00099014	-1.0755	-0.00058491	0.74513	0.00040523	543.8313357908389	19.302	0.3568	19.302	19.222	19.579	0					24	10	3	0	0	0	0.017421	1	4959	4959		134.81	63.515	1	633340			34157	4863	23728	23806	34573	34573					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8902587890625	3	362.890332	1085.64917	0.46138	0.00016743	-0.58435	-0.00021205	-0.12297	-4.4623E-05	362.8902008786618	19.302	0.3568	19.302	19.222	19.579	0					27	10	4	0	0	0	0.070005	1	4960	4960		88.177	22.712	1	955140			34158	4863	23728	23806	34574	34574					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8327026367188	2	543.83186	1085.64917	1.1595	0.00063056	0.061702	3.3555E-05	1.2212	0.00066412	543.8318333374323	19.304	0.18817	19.304	19.214	19.402	0					9	5	2	0	0	0	0.063171	1	4972	4972		84.916	31.564	1	89297			34159	4863	23728	23806	34575	34575					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.89019775390625	3	362.890332	1085.64917	0.7363	0.0002672	-1.0461	-0.0003796	-0.30976	-0.00011241	362.8899903559022	19.575	1.1448	19.575	19.481	20.625	0					60	25	5	0	0	0	0.020674	1	5939	5939		120.87	43.551	1	13876000			34160	4863	23728	23806	34576	34576					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8321533203125	2	543.83186	1085.64917	0.35187	0.00019136	0.34847	0.00018951	0.70034	0.00038087	543.8320032591422	19.608	0.31523	19.608	19.508	19.823	0					18	7	3	0	0	0	0.02953	1	5956	5956		93.195	39.844	1	1788600			34161	4863	23728	23806	34577	34577					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8321533203125	2	543.83186	1085.64917	0.39566	0.00021517	0.67037	0.00036457	1.066	0.00057974	543.8322582047666	19.317	0.41119	19.317	19.215	19.626	0					29	12	3	0	0	0	0.020674	1	5199	5199		104.75	35.96	1	808900			34162	4863	23728	23806	34578	34578					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8318481445312	2	543.83186	1085.64917	1.9901	0.0010823	-1.428	-0.00077658	0.56208	0.00030568	543.831042354341	19.47	0.46223	19.47	19.363	19.826	0					32	9	4	0	0	0	0.00324	1	6169	6169		152.47	78.496	1	11168000			34163	4863	23728	23806	34579	34579					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.8902587890625	3	362.890332	1085.64917	0.38695	0.00014042	-0.48527	-0.0001761	-0.098319	-3.5679E-05	362.8902191432031	19.377	0.39998	19.377	19.289	19.689	0					21	9	3	0	0	0	0.02953	1	5239	5239		109.48	47.371	1	905920			34164	4863	23728	23806	34580	34580					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8321533203125	2	543.83186	1085.64917	1.0881	0.00059176	-0.62581	-0.00034034	0.46232	0.00025143	543.8317423485087	19.36	0.39821	19.36	19.274	19.673	0					24	9	4	0	0	0	0.0059092	1	5252	5252		125.81	45.875	1	798830			34165	4863	23728	23806	34581	34581					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.89019775390625	3	362.890332	1085.64917	-0.10002	-3.6295E-05	0.40685	0.00014764	0.30684	0.00011135	362.89024625685954	19.36	0.27381	19.36	19.274	19.548	0					14	6	3	0	0	0	0.10506	1	5255	5255		78.264	33.887	1	227240			34166	4863	23728	23806	34582	34582					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.8321533203125	2	543.83186	1085.64917	-1.4925	-0.00081169	2.9504	0.0016045	1.4579	0.00079285	543.8335194192518	19.351	0.39674	19.351	19.306	19.703	0					20	9	3	0	0	0	0.020674	1	5243	5243		116.9	45.608	1	594550			34167	4863	23728	23806	34583	34583					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.89013671875	3	362.890332	1085.64917	-0.076483	-2.7755E-05	-0.45394	-0.00016473	-0.53043	-0.00019249	362.8903109015403	19.5	0.61709	19.5	19.343	19.961	0					32	12	5	0	0	0	0.047855	1	6024	6024		96.034	35.915	1	16199000			34168	4863	23728	23806	34584	34584					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8316650390625	2	543.83186	1085.64917	0.59877	0.00032563	-0.24013	-0.00013059	0.35864	0.00019504	543.8318574864725	19.5	0.36336	19.5	19.394	19.757	0					18	7	4	0	0	0	0.0023831	1	6026	6026		143.89	55.244	1	1121600			34169	4863	23728	23806	34585	34585					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8317260742188	2	543.83186	1085.64917	1.9923	0.0010835	-1.9371	-0.0010534	0.055269	3.0057E-05	543.8307737021878	19.484	0.46438	19.484	19.378	19.842	0					24	9	3	0	0	0	0.0059092	1	6040	6040		138.83	72.396	1	11921000			34170	4863	23728	23806	34586	34586					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.8902893066406	3	362.890332	1085.64917	1.1305	0.00041025	-0.73271	-0.00026589	0.39779	0.00014436	362.8898704604603	19.484	0.71652	19.484	19.378	20.094	0					36	14	3	0	0	0	0.095583	1	6042	6042		80.455	27.518	1	7325800			34171	4863	23728	23806	34587	34587					0.10976879718964483
RVMKALVNR	9	Unmodified	_RVMKALVNR_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.8321533203125	2	543.83186	1085.64917	3.659	0.0019899	-2.6664	-0.0014501	0.99259	0.0005398	543.8305138553125	19.467	0.51554	19.467	19.36	19.876	0					34	10	5	0	0	0	0.003936	1	6032	6032		161.9	87.923	1	7555400			34172	4863	23728	23806	34588	34588					0.10976879718964483
RVMKALVNR	9	Oxidation (M)	_RVM(Oxidation (M))KALVNR_		RVM(1)KALVNR		RVM(59)KALVNR	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.8296508789062	2	551.829317	1101.64408	1.8265	0.0010079	-1.1463	-0.00063257	0.68015	0.00037533	551.8287473220967	16.239	0.5257	16.239	16.149	16.674	0					20	12	3	0	0	0	0.22377	1	4369	4369		58.782	12.83	1	686390			34173	4863	23728	23807	34589	34589		198			0.09732575856332915
RVMKALVNR	9	Oxidation (M)	_RVM(Oxidation (M))KALVNR_		RVM(1)KALVNR		RVM(45)KALVNR	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.22186279296875	3	368.22197	1101.64408	0.76302	0.00028096	-0.55265	-0.0002035	0.21036	7.7461E-05	368.2218968357117	16.24	0.60287	16.24	16.149	16.752	0					24	14	4	0	0	0	0.36135	1	4370	4370		45.022	18.959	1	505740			34174	4863	23728	23807	34590	34590		198			0.09732575856332915
RVMKALVNR	9	Oxidation (M)	_RVM(Oxidation (M))KALVNR_		RVM(1)KALVNR		RVM(57)KALVNR	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.830078125	2	551.829317	1101.64408	0.74498	0.0004111	0.31984	0.0001765	1.0648	0.0005876	551.8296286872235	16.208	0.32056	16.208	16.097	16.418	0					10	6	3	0	0	0	0.24095	1	4430	4430		56.721	14.325	1	202650			34175	4863	23728	23807	34591	34591		198			0.09732575856332915
RVMKALVNR	9	Oxidation (M)	_RVM(Oxidation (M))KALVNR_		RVM(1)KALVNR		RVM(46)KALVNR	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.22210693359375	3	368.22197	1101.64408	0.92701	0.00034134	-0.43966	-0.00016189	0.48734	0.00017945	368.22194203705834	16.191	0.57013	16.191	16.08	16.65	0					22	11	3	0	0	0	0.34452	1	4442	4442		46.457	14.823	1	1355700			34176	4863	23728	23807	34592	34592		198			0.09732575856332915
RVMKKDLQ	8	Unmodified	_RVMKKDLQ_					0	0	0			REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2952880859375	2	509.297319	1016.58008	-1.8551	-0.00094482	-1.3642	-0.0006948	-3.2194	-0.0016396	509.2965634853857	23.453	0.3125	23.453	23.326	23.638	0					15	7	3	0	0	0	0.67836	1	7157	7157		26.693	2.4902	1	181890	+		34177	17113	23729	23808	34593	34593					0.07245795699407154
RVMPDGKIQK	10	Unmodified	_RVMPDGKIQK_					0	0	0		FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant;FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	FARSB|p.I265*|1|0.36|ENSG00000116120|chr2:222630168-222630168|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.3344116210938	2	586.334433	1170.65431	0.10783	6.3225E-05	0.26829	0.0001573	0.37612	0.00022053	586.3346860810843	18.48	0.1168	18.48	18.421	18.538	0					4	2	2	0	0	0	0.2602	1	5554	5554		78.264	17.292	1	144540			34178	2962	23730	23809	34594	34594					0.07581138790919795
RVMPPPWL	8	Unmodified	_RVMPPPWL_					0	0	0		PARK2|p.V330Rfs*17|1|0.31|ENSG00000185345|chr6:161548950-161548951|-/C|frameshift_variant	PARK2|p.V330Rfs*17|1|0.31|ENSG00000185345|chr6:161548950-161548951|-/C|frameshift_variant	PARK2|p.V330Rfs*17|1|0.31|ENSG00000185345|chr6:161548950-161548951|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2792053222656	2	498.278398	994.542243	-1.1059	-0.00055103	3.8503	0.0019185	2.7444	0.0013675	498.27999694794636	36.262	0.082314	36.262	36.203	36.285	0					8	4	2	0	0	0	0.55361	1	12289	12289		54.765	3.572	1	54287			34179	11897	23731	23810	34595	34595					0.04475329504589354
RVMQDIVYK	9	Unmodified	_RVMQDIVYK_					0	0	0		ENST00000496911.1_1_2:74733844-74734286:-|nuORF;ENST00000480844.2_1_2:74732736-74734502:-|nuORF;nc|ENSG00000115289|Q9BSM1-3|PCGF1;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.3160400390625	2	576.315709	1150.61686	1.4812	0.00085364	-0.39808	-0.00022942	1.0831	0.00062422	576.3152742049806	26.67	0.10289	26.67	26.592	26.695	0					5	3	2	0	0	0	0.43488	1	8140	8140		38.754	9.6041	1	32785			34180	2898	23732	23811	34596	34596					0.047580475252971155
RVMQDIVYK	9	Unmodified	_RVMQDIVYK_					0	0	0		ENST00000496911.1_1_2:74733844-74734286:-|nuORF;ENST00000480844.2_1_2:74732736-74734502:-|nuORF;nc|ENSG00000115289|Q9BSM1-3|PCGF1;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.3164672851562	2	576.315709	1150.61686	1.5652	0.00090204	-0.31061	-0.00017901	1.2546	0.00072303	576.3153147257518	26.849	0.26074	26.849	26.76	27.021	0					12	6	3	0	0	0	0.44949	1	9345	9345		37.508	8.3381	1	410740			34181	2898	23732	23811	34597	34597					0.047580475252971155
RVMQDIVYK	9	Unmodified	_RVMQDIVYK_					0	0	0		ENST00000496911.1_1_2:74733844-74734286:-|nuORF;ENST00000480844.2_1_2:74732736-74734502:-|nuORF;nc|ENSG00000115289|Q9BSM1-3|PCGF1;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.3161010742188	2	576.315709	1150.61686	1.6972	0.00097813	-1.038	-0.00059819	0.65926	0.00037994	576.3150711394289	26.844	0.36472	26.844	26.739	27.103	0					17	7	4	0	0	0	0.16806	1	9550	9550		65.465	5.3471	1	1122500			34182	2898	23732	23811	34598	34598					0.047580475252971155
RVMQLMSY	8	Unmodified	_RVMQLMSY_					0	0	0			REV__ENSG00000167139|ENST00000300504|TBC1D21	REV__ENSG00000167139|ENST00000300504|TBC1D21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2606201171875	2	514.256805	1026.49906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.12	1	34.12	33.62	34.62	0								0	0	0	1.7419	1	11495	11495		55.504	0.72789	1		+		34183	16171	23733	23812	34599	34599					-0.01313228334993255
RVNKPDQAP	9	Unmodified	_RVNKPDQAP_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.1892395019531	3	342.189324	1023.54614	-0.027236	-9.3199E-06	-0.30286	-0.00010363	-0.33009	-0.00011295	342.18926674076386	18.279	0.16449	18.279	18.223	18.387	0					5	3	2	0	0	0	0.5654	1	5453	5453		25.574	0	1	859570	+		34184	16345	23734	23813	34600	34600					0.03531090531987502
RVNLAGAVN	9	Unmodified	_RVNLAGAVN_					0	0	0			REV__tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	REV__tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2646179199219	2	457.264333	912.514114	0.22984	0.0001051	0.4741	0.00021679	0.70394	0.00032189	457.2644400931329	47.322	0.55339	47.322	46.918	47.471	0					54	34	2	0	0	0	0.53083	1	15862	15862		29.15	6.1071	1	66170	+		34185	22158	23735	23814	34601	34601					0.05435722848858404
RVNPKNVA	8	Unmodified	_RVNPKNVA_					0	0	0			REV__tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1	REV__tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.266357421875	2	449.266876	896.519199	0.13243	5.9494E-05	-0.89135	-0.00040045	-0.75892	-0.00034096	449.26642076494306	19.946	0.59405	19.946	19.632	20.226	0					21	13	2	0	0	0	0.59411	1	6049	6049		50.025	5.9077	1	182920	+		34186	22046	23736	23815	34602	34602					0.06680026711467235
RVNPKNVA	8	Unmodified	_RVNPKNVA_					0	0	0			REV__tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1	REV__tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2666015625	2	449.266876	896.519199	-0.093317	-4.1924E-05	-0.8067	-0.00036242	-0.90001	-0.00040435	449.2664673601827	19.678	0.76978	19.678	19.527	20.297	0					23	15	2	0	0	0	0.57802	1	6250	6250		52.299	0	1	208210	+		34187	22046	23736	23815	34603	34603					0.06680026711467235
RVNPSMVTK	9	Unmodified	_RVNPSMVTK_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.286865234375	2	516.286951	1030.55935	0.18463	9.5324E-05	-0.21482	-0.00011091	-0.030187	-1.5585E-05	516.2868403514082	19.45	0.21531	19.45	19.293	19.508	0					7	4	2	0	0	0	0.16806	1	6030	6030		65.465	12.529	1	307970			34188	5749	23737	23816	34604	34604					0.04529205319727225
RVPCRHTR	8	Carbamidomethyl (C)	_RVPC(Carbamidomethyl (C))RHTR_	RVPC(1)RHTR		RVPC(53)RHTR		0	1	0			REV__ENST00000531660.5_1_11:47270518-47282963:+|nuORF	REV__ENST00000531660.5_1_11:47270518-47282963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2949829101562	2	541.293434	1080.57231	1.8938	0.0010251	0.93359	0.00050535	2.8274	0.0015305	541.2939991522371	16.518	0.30066	16.518	16.451	16.752	0					16	7	4	0	0	0	0.5676	1	4496	4496		53.351	53.351	1	509950	+		34189	20061	23738	23817	34605	34605	706				0.03525081222483095
RVPDRSRY	8	Unmodified	_RVPDRSRY_					0	0	0			REV__MKS1|p.F377Lfs*53|1|0.3|ENSG00000011143|chr17:58208139-58208139|A/-|frameshift_variant;REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7877197265625	2	524.785964	1047.55738	5.3376	0.0028011	-1.1632	-0.00061042	4.1744	0.0021907	524.7854132879539	40.268	0.22462	40.268	40.166	40.391	0					19	12	2	0	0	0	0.7126	1	13477	13477		31.955	2.1133	1	126060	+		34190	20885;20886	23739	23818	34606	34606					0.03549912626135665
RVPKLLAVS	9	Unmodified	_RVPKLLAVS_					0	0	0		ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.8238220214844	2	491.824027	981.633501	-0.54658	-0.00026882	0.25509	0.00012546	-0.29148	-0.00014336	491.8241130554925	30.779	0.3074	30.779	30.692	30.999	0					13	7	2	0	0	0	0.45358	1	11149	11149		37.159	1.5408	1	343210			34191	10833	23740	23819	34607	34607					0.1419491647357063
RVPLAIVNK	9	Unmodified	_RVPLAIVNK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.3301086425781	2	505.329476	1008.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.97	1	26.97	26.47	27.47	0								0	0	0	0.040851	1	9368	9368		90.37	28.262	1				34192	7426	23741	23820	34608	34608					0.14042318847850765
RVPLAIVNK	9	Unmodified	_RVPLAIVNK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.3294677734375	2	505.329476	1008.6444	0.11962	6.0448E-05	-0.34211	-0.00017288	-0.22249	-0.00011243	505.3293169933449	26.936	0.2617	26.936	26.778	27.039	0					11	5	3	0	0	0	0.037569	1	9690	9690		101.6	35.798	1	317570			34193	7426	23741	23820	34609	34609					0.14042318847850765
RVPLAIVNK	9	Unmodified	_RVPLAIVNK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.3296203613281	2	505.329476	1008.6444	-0.31289	-0.00015811	0.43581	0.00022023	0.12292	6.2114E-05	505.32967838198186	26.911	0.26364	26.911	26.705	26.968	0					13	5	3	0	0	0	0.0792	1	9555	9555		84.916	42.519	1	349360			34194	7426	23741	23820	34610	34610					0.14042318847850765
RVPPEFLVQ	9	Unmodified	_RVPPEFLVQ_					0	0	0		MOGS|p.P513Qfs*7|1|0.57|ENSG00000115275|chr2:74462251-74462251|G/-|frameshift_variant;ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;MOGS|p.Y749Tfs*44|1|0.51|ENSG00000115275|chr2:74461545-74461545|G/-|frameshift_variant;ENSG00000115275|ENST00000448666|MOGS	MOGS|p.P513Qfs*7|1|0.57|ENSG00000115275|chr2:74462251-74462251|G/-|frameshift_variant	MOGS|p.P513Qfs*7|1|0.57|ENSG00000115275|chr2:74462251-74462251|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.8111572265625	2	542.811116	1083.60768	1.8839	0.0010226	-1.37	-0.00074364	0.51395	0.00027898	542.8104393628481	34.919	0.54401	34.919	34.811	35.355	0					24	14	3	0	0	0	0.21419	1	13042	13042		52.937	0	1	646920			34195	2897	23742	23821	34611	34611					0.06922022231265146
RVPRGLGT	8	Unmodified	_RVPRGLGT_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.26129150390625	2	428.261594	854.508634	-0.4796	-0.0002054	0.25916	0.00011099	-0.22044	-9.4406E-05	428.26159392812497	51.681	0.44611	51.681	51.55	51.996	0					73	27	4	0	0	0	0.79719	1	15405	15405		18.324	0	1	1570000			34196	10552	23743	23822	34612	34612					0.07556044057048439
RVPSVFNI	8	Unmodified	_RVPSVFNI_					0	0	0			REV__CTSC|p.F302Lfs*27|1|0.1|ENSG00000109861|chr11:88294495-88294496|-/A|frameshift_variant	REV__CTSC|p.F302Lfs*27|1|0.1|ENSG00000109861|chr11:88294495-88294496|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2710266113281	2	466.271627	930.528701	-0.6697	-0.00031226	-0.5644	-0.00026316	-1.2341	-0.00057542	466.27134010897623	35.913	0.27811	35.913	35.779	36.057	0					13	7	2	0	0	0	0.67394	1	13472	13472		37.159	0	1	212910	+		34197	12647	23744	23823	34613	34613					0.06065794997005014
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	607.8654174804688	2	607.866423	1213.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.935	1	19.935	19.435	20.435	0								0	0	0	0.37672	1	5252	5252		40.058	20.061	1				34198	7014	23745	23824	34614	34614					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.5800476074219	3	405.580041	1213.71829	-0.11737	-4.7605E-05	0.0555	2.251E-05	-0.061874	-2.5095E-05	405.5800392240052	19.898	0.14817	19.898	19.822	19.97	0					6	4	2	0	0	0	0.42408	1	5224	5224		53.597	18.419	1	241420			34199	7014	23745	23824	34615	34615					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.5799865722656	3	405.580041	1213.71829	-0.51327	-0.00020817	0.49669	0.00020145	-0.016574	-6.7221E-06	405.5802806681945	20.233	0.55958	20.233	20.095	20.655	0					24	12	4	0	0	0	0.078327	1	6232	6232		99.788	32.826	1	1512300			34200	7014	23745	23824	34616	34616					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	607.8660278320312	2	607.866423	1213.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.978	1	19.978	19.478	20.478	0								0	0	0	0.4201	1	5506	5506		18.262	4.125	1				34201	7014	23745	23824	34617	34617					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	405.5804748535156	3	405.580041	1213.71829	-1.3764	-0.00055822	1.6079	0.00065213	0.23153	9.3905E-05	405.5806581288451	19.941	0.11012	19.941	19.872	19.983	0					7	3	3	0	0	0	0.48255	1	5499	5499		47.228	12.049	1	125970			34202	7014	23745	23824	34618	34618					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.8665771484375	2	607.866423	1213.71829	0.019023	1.1563E-05	-0.033954	-2.0639E-05	-0.014931	-9.0763E-06	607.8664229980401	20.146	0.16583	20.146	20.044	20.209	0					8	3	3	0	0	0	0.39177	1	6368	6368		53.089	3.5529	1	440430			34203	7014	23745	23824	34619	34619					0.11998242219510757
RVQAGAPFC	9	Unmodified	_RVQAGAPFC_					0	0	0			REV__IHH|p.R253*|1|0.66|ENSG00000163501|chr2:219055683-219055686|GCCT/-|frameshift_variant	REV__IHH|p.R253*|1|0.66|ENSG00000163501|chr2:219055683-219055686|GCCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7422180175781	2	474.739637	947.464721	3.6268	0.0017218	2.6839	0.0012742	6.3108	0.002996	474.7407917955642	30.436	0.1747	30.436	30.316	30.491	0					13	5	3	0	0	0	0.49003	1	9977	9977		33.516	3.674	1	72407	+		34204	15886	23746	23825	34620	34620					-0.011113084316093591
RVQDIFTAGK	10	Unmodified	_RVQDIFTAGK_					0	0	0		nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8	nc|ENSG00000092068|Q9UHI5-4|SLC7A8	nc|ENSG00000092068|Q9UHI5-4|SLC7A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.8177490234375	2	567.81693	1133.61931	0.81625	0.00046348	-0.066233	-3.7608E-05	0.75002	0.00042587	567.8166999713036	30.017	0.20662	30.017	29.916	30.122	0					9	4	3	0	0	0	0.39647	1	11168	11168		56.632	3.0354	1	115760			34205	1865	23747	23826	34621	34621					0.05784219254610434
RVQDIFTAGK	10	Unmodified	_RVQDIFTAGK_					0	0	0		nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8	nc|ENSG00000092068|Q9UHI5-4|SLC7A8	nc|ENSG00000092068|Q9UHI5-4|SLC7A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.8173828125	2	567.81693	1133.61931	0.52842	0.00030004	0.69432	0.00039425	1.2227	0.00069429	567.8172573521679	29.956	0.2192	29.956	29.846	30.065	0					6	4	2	0	0	0	0.38179	1	11047	11047		58.246	8.7102	1	153530			34206	1865	23747	23826	34622	34622					0.05784219254610434
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.80810546875	2	568.806562	1135.59857	1.4593	0.00083007	0.65155	0.00037061	2.1109	0.0012007	568.8070858816588	22.963	0.097633	22.963	22.918	23.015	0					8	3	3	0	0	0	0.095583	1	6588	6588		80.455	0.96554	1	71426			34207	3336	23748	23827	34623	34623					0.03619628874935188
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.8068237304688	2	568.806562	1135.59857	1.7582	0.0010001	-1.2526	-0.00071251	0.50561	0.00028759	568.8057976459091	23.268	0.27921	23.268	23.177	23.456	0					13	6	3	0	0	0	0.0043467	1	7689	7689		160.82	62.193	1	1271800			34208	3336	23748	23827	34624	34624					0.03619628874935188
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.806640625	2	568.806562	1135.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.251	1	23.251	22.751	23.751	0								0	0	0	0.17415	1	7986	7986		54.722	1.6334	1				34209	3336	23748	23827	34625	34625					0.03619628874935188
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.8073120117188	2	568.806562	1135.59857	1.3241	0.00075315	0.33184	0.00018875	1.6559	0.0009419	568.8065161391412	23.055	0.14676	23.055	22.963	23.11	0					5	3	2	0	0	0	0.21419	1	6985	6985		59.931	6.9941	1	68763			34210	3336	23748	23827	34626	34626					0.03619628874935188
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.8068237304688	2	568.806562	1135.59857	0.40923	0.00023277	0.35328	0.00020095	0.76251	0.00043372	568.8066523054445	23.192	0.26824	23.192	23.084	23.352	0					13	5	4	0	0	0	0.014413	1	7838	7838		131.62	26.87	1	714010			34211	3336	23748	23827	34627	34627					0.03619628874935188
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.8956298828125	3	425.8957	1274.66527	0.29269	0.00012466	-0.70472	-0.00030014	-0.41203	-0.00017548	425.89545422802007	28.093	0.2106	28.093	28.017	28.228	0					16	7	3	0	0	0	0.33569	1	8720	8720		84.188	40.77	1	256910			34212	9719	23749	23828	34628	34628					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	638.3399047851562	2	638.339912	1274.66527	-1.0315	-0.00065844	0.55618	0.00035503	-0.47532	-0.00030341	638.340387535032	28.333	0.36731	28.333	28.208	28.575	0					42	9	6	0	0	0	5.6237E-06	1	9992	9992		183.85	93.252	1	21528000			34213	9719	23749	23828	34629	34629					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.8955993652344	3	425.8957	1274.66527	0.9068	0.0003862	-1.3423	-0.00057168	-0.43549	-0.00018547	425.8952606624957	28.333	0.28657	28.333	28.25	28.537	0					25	7	5	0	0	0	0.034131	1	9993	9993		160.72	111.26	1	3625800			34214	9719	23749	23828	34630	34630					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.89556884765625	3	425.8957	1274.66527	0.90723	0.00038639	-1.5973	-0.00068027	-0.69004	-0.00029388	425.89522970334014	28.373	0.3082	28.373	28.224	28.532	0					22	6	5	0	0	0	0.018969	1	10375	10375		168.85	115.25	1	3931100			34215	9719	23749	23828	34631	34631					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	638.3400268554688	2	638.339912	1274.66527	-0.69718	-0.00044504	0.59036	0.00037685	-0.10682	-6.8189E-05	638.3403715591402	28.168	0.38455	28.168	28.082	28.467	0					23	9	4	0	0	0	0.00078742	1	9301	9301		136.49	71.023	1	2719900			34216	9719	23749	23828	34632	34632					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.8957824707031	3	425.8957	1274.66527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.194	1	28.194	27.694	28.694	0								0	0	0	0.34471	1	9325	9325		79.036	45.996	1				34217	9719	23749	23828	34633	34633					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	638.3399047851562	2	638.339912	1274.66527	0.27388	0.00017483	-0.49715	-0.00031735	-0.22327	-0.00014253	638.3397174375671	28.151	0.30459	28.151	28.069	28.374	0					20	7	5	0	0	0	7.0259E-05	1	9315	9315		150.15	71.888	1	1224600			34218	9719	23749	23828	34634	34634					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.8957214355469	3	425.8957	1274.66527	-0.066526	-2.8333E-05	0.10049	4.2797E-05	0.033962	1.4464E-05	425.89573370098816	28.151	0.23384	28.151	28.103	28.337	0					7	5	2	0	0	0	0.30412	1	9316	9316		105.36	61.94	1	436680			34219	9719	23749	23828	34635	34635					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	638.33984375	2	638.339912	1274.66527	-0.10533	-6.7239E-05	-0.61308	-0.00039136	-0.71842	-0.00045859	638.3397695581488	28.269	0.81496	28.269	28.16	28.975	0					53	16	6	0	0	0	6.6028E-05	1	10208	10208		152.69	79.814	1	32455000			34220	9719	23749	23828	34636	34636					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.89556884765625	3	425.8957	1274.66527	-0.38798	-0.00016524	-0.37106	-0.00015803	-0.75904	-0.00032327	425.89569273990946	28.27	0.26618	28.27	28.16	28.426	0					20	5	5	0	0	0	0.0142	1	10230	10230		171.67	116.58	1	3147000			34221	9719	23749	23828	34637	34637					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	638.33984375	2	638.339912	1274.66527	-0.60659	-0.00038721	0.14118	9.0122E-05	-0.46541	-0.00029709	638.3401457021558	28.302	0.76593	28.302	28.143	28.909	0					41	15	6	0	0	0	6.6028E-05	1	10222	10222		152.69	69.942	1	14093000			34222	9719	23749	23828	34638	34638					0.03892496374533039
RVQEAVESMVK	11	Unmodified	_RVQEAVESMVK_					0	0	0		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.8955383300781	3	425.8957	1274.66527	1.0535	0.00044866	-1.6666	-0.00070981	-0.61316	-0.00026114	425.8951122134549	28.302	0.51313	28.302	28.194	28.707	0					27	10	4	0	0	0	0.00035695	1	10223	10223		191.33	115.68	1	7265400			34223	9719	23749	23828	34639	34639					0.03892496374533039
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(120)VK	0	0	1		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	646.337890625	2	646.337369	1290.66019	0.42233	0.00027297	0.36936	0.00023873	0.79169	0.0005117	646.3378277898771	21.005	0.21446	21.005	20.92	21.135	0					11	5	3	0	0	0	0.029346	1	6619	6619		115.23	42.353	1	728920			34224	9719	23749	23829	34640	34640		390			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(120)VK	0	0	1		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	646.337890625	2	646.337369	1290.66019	1.9604	0.0012671	-1.5825	-0.0010228	0.37792	0.00024426	646.3365792671257	20.921	0.21479	20.921	20.863	21.078	0					13	4	4	0	0	0	0.026261	1	6867	6867		116.84	76.779	1	2164900			34225	9719	23749	23829	34641	34641		390			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(110)VK	0	0	1		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	646.3372192382812	2	646.337369	1290.66019	-1.1794	-0.00076228	0.7427	0.00048003	-0.43668	-0.00028224	646.3379184608149	20.934	0.26577	20.934	20.828	21.093	0					13	5	3	0	0	0	0.047958	1	6746	6746		106.16	44.05	1	1813000			34226	9719	23749	23829	34642	34642		390			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(130)VK	0	0	1		ENST00000460307.1_1_2:70528513-70529143:-|nuORF;ENST00000498665.1_1_2:70527944-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	ENST00000460307.1_1_2:70528513-70529143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	646.3377685546875	2	646.337369	1290.66019	2.8877	0.0018665	-2.3018	-0.0014877	0.58595	0.00037872	646.3357630876353	21.121	0.56137	21.121	20.86	21.421	0					20	11	4	0	0	0	0.00119	2	6735	6735;6905		131.42	73.188	1	2444200			34227	9719	23749	23829	34643;34644	34643		390			0.026481925119014704
RVQEENARLK	10	Unmodified	_RVQEENARLK_					0	0	0		MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.9019775390625	3	414.901954	1241.68403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.352	1	16.352	15.852	16.852	0								0	0	0	0.13836	1	4413	4413		72.096	17.012	1				34228	5083	23750	23830	34645	34645					0.07285794060612716
RVQEENARLK	10	Unmodified	_RVQEENARLK_					0	0	0		MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.9019775390625	3	414.901954	1241.68403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.288	1	16.288	15.788	16.788	0								0	0	0	0.28286	1	4479	4479		53.597	8.9574	1				34229	5083	23750	23830	34646	34646					0.07285794060612716
RVQGGFQLL	9	Unmodified	_RVQGGFQLL_					0	0	0			REV__ENSG00000105550|ENST00000593756|FGF21	REV__ENSG00000105550|ENST00000593756|FGF21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.29583740234375	2	509.295633	1016.57671	-0.10744	-5.4716E-05	-0.067319	-3.4285E-05	-0.17475	-8.9002E-05	509.29564676707247	23.357	0.25359	23.357	23.249	23.502	0					16	7	3	0	0	0	0.35021	1	6726	6726		30.504	0	1	189250	+		34230	13782	23751	23831	34647	34647					0.06908868917037125
RVQGTPVASK	10	Unmodified	_RVQGTPVASK_					0	0	0		ENST00000509182.1_1_5:61688751-61699599:-|nuORF;DIMT1|p.N254Tfs*12|1|0.38|ENSG00000086189|chr5:62392202-62392202|T/-|frameshift_variant;ENSG00000086189|ENST00000199320|DIMT1	ENST00000509182.1_1_5:61688751-61699599:-|nuORF	ENST00000509182.1_1_5:61688751-61699599:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.8040771484375	2	521.803823	1041.59309	1.0727	0.00055975	-0.23624	-0.00012327	0.83648	0.00043648	521.8035083067067	15.493	0.11603	15.493	15.434	15.55	0					4	2	2	0	0	0	0.39647	1	4258	4258		56.632	8.9749	1	65962			34231	788	23752	23832	34648	34648					0.073959500831279
RVQKKTFTK	9	Unmodified	_RVQKKTFTK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.D223Tfs*30|1|0.47|ENSG00000178209|chr8:143938159-143938159|C/-|frameshift_variant;ENST00000467673.5_1_1:39571193-39720158:+|nuORF;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant	nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.2364807128906	3	379.236385	1134.68733	0.81777	0.00031013	-0.65466	-0.00024827	0.16312	6.1859E-05	379.23611422617114	13.708	0.089832	13.708	13.665	13.755	0					4	2	2	0	0	0	0.12278	1	3191	3191		74.165	21.076	1	153420			34232	6707;11514	23753	23833	34649	34649					0.1253708890528742
RVQKPGDL	8	Unmodified	_RVQKPGDL_					0	0	0			REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.76654052734375	2	456.766709	911.518865	0.22713	0.00010374	-0.33613	-0.00015353	-0.10901	-4.9791E-05	456.76662679165304	26.069	0.26628	26.069	25.95	26.216	0					10	6	2	0	0	0	0.51384	1	8338	8338		58.782	4.0056	1	239600	+		34233	20486	23754	23834	34650	34650					0.05956606991605895
RVQKPGDL	8	Unmodified	_RVQKPGDL_					0	0	0			REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7664489746094	2	456.766709	911.518865	-0.43278	-0.00019768	-0.11892	-5.4321E-05	-0.5517	-0.000252	456.76667948765134	26.21	0.26348	26.21	26.051	26.315	0					13	5	3	0	0	0	0.65148	1	9217	9217		40.778	2.9666	1	894380	+		34234	20486	23754	23834	34651	34651					0.05956606991605895
RVQKSISQK	9	Unmodified	_RVQKSISQK_					0	0	0		ENST00000523198.5_1_5:153826164-153832030:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L	ENST00000523198.5_1_5:153826164-153832030:+|nuORF	ENST00000523198.5_1_5:153826164-153832030:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.5525207519531	3	358.552374	1072.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.192	1	13.192	12.692	13.692	0								0	0	0	0.27939	1	3152	3152		38.754	6.0031	1				34235	5706	23755	23835	34652	34652					0.10187925491527494
RVQVVGTYR	9	Unmodified	_RVQVVGTYR_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.3118896484375	2	539.311815	1076.60908	1.9889	0.0010726	-1.3007	-0.00070146	0.68821	0.00037116	539.310922843096	22.173	0.10145	22.173	22.119	22.221	0					6	2	3	0	0	0	0.13907	1	7176	7176		82.75	27.246	1	408250			34236	2715	23756	23836	34653	34653					0.07383656320052978
RVQVVGTYR	9	Unmodified	_RVQVVGTYR_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3121337890625	2	539.311815	1076.60908	1.4236	0.00076777	-0.55366	-0.0002986	0.86995	0.00046918	539.3114485921394	22.079	0.16392	22.079	21.972	22.136	0					7	3	3	0	0	0	0.067603	1	7430	7430		104.06	27.283	1	226820			34237	2715	23756	23836	34654	34654					0.07383656320052978
RVRAAFVL	8	Unmodified	_RVRAAFVL_					0	0	0		ENST00000578105.1_1_17:57196729-57196795:-|nuORF	ENST00000578105.1_1_17:57196729-57196795:-|nuORF	ENST00000578105.1_1_17:57196729-57196795:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7384948730469	2	466.295436	930.57632	-0.49811	-0.00023227	-2.0723	-0.0009663	-2.5704	-0.0011986	466.29451368780076	36.276	0.26453	36.276	36.081	36.346	0					7	5	2	0	0	0	0.75243	1	14004	14004		26.796	0.10319	1	49786			34238	10848	23757	23837	34655	34655					0.10825493987852042
RVRDHPGQY	9	Unmodified	_RVRDHPGQY_					0	0	0		ENST00000442007.1_1_6:73985509-73985899:+|nuORF	ENST00000442007.1_1_6:73985509-73985899:+|nuORF	ENST00000442007.1_1_6:73985509-73985899:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2879638671875	2	564.288871	1126.56319	1.8903	0.0010667	0.86561	0.00048845	2.7559	0.0015551	564.2893479639288	39.081	0.45187	39.081	38.982	39.434	0					43	15	4	0	0	0	0.41113	1	15460	15460		40.778	40.778	1	1550100			34239	9585	23758	23838	34656	34656					0.00497011137804293
RVRDVFEAK	9	Unmodified	_RVRDVFEAK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000491610.1_1_3:49064384-49065376:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.8802185058594	3	373.88049	1118.61964	0.81028	0.00030295	-1.7274	-0.00064585	-0.91713	-0.0003429	373.87981315784214	21.456	0.26778	21.456	21.357	21.625	0					16	5	4	0	0	0	0.16806	1	7114	7114		65.465	20.443	1	784740			34240	6697	23759	23839	34657	34657					0.06507638974449037
RVRFLLRAG	9	Unmodified	_RVRFLLRAG_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.2326965332031	3	363.233087	1086.67743	0.38538	0.00013998	-1.4296	-0.00051926	-1.0442	-0.00037928	363.2324572570837	19.897	0.19373	19.897	19.755	19.949	0					6	4	2	0	0	0	0.23186	1	5481	5481		54.776	12.38	1	80941	+		34241	14754	23760	23840	34658	34658					0.13755945690536464
RVRGRGPR	8	Unmodified	_RVRGRGPR_					0	0	0			REV__ENST00000555995.1_1_14:91755401-91757391:-|nuORF	REV__ENST00000555995.1_1_14:91755401-91757391:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2974853515625	2	477.296833	952.579114	-0.034027	-1.6241E-05	1.1614	0.00055434	1.1274	0.0005381	477.2973411031557	30.31	0.15776	30.31	30.262	30.42	0					5	3	2	0	0	0	0.7126	1	10316	10316		31.955	1.6371	1	64446	+		34242	19879	23761	23841	34659	34659					0.10092762165368185
RVRHAEDVN	9	Unmodified	_RVRHAEDVN_					0	0	0			REV__ENST00000606285.1_1_6:710944-711145:-|nuORF	REV__ENST00000606285.1_1_6:710944-711145:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2845458984375	2	548.286328	1094.5581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.865	1	34.865	34.365	35.365	0								0	0	0	0.27025	1	13026	13026		40.778	1.5253	1		+		34243	20616	23762	23842	34660	34660					0.01460707275191453
RVRHWTQT	8	Unmodified	_RVRHWTQT_					0	0	0			REV__TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant	REV__TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.295654296875	2	542.293956	1082.57336	1.8875	0.0010236	1.1754	0.00063744	3.0629	0.001661	542.2944886525759	36.677	0.24182	36.677	36.595	36.837	0					16	6	3	0	0	0	0.5676	1	13860	13860		53.351	8.9743	1	501510	+		34244	16546	23763	23843	34661	34661					0.03537618863015268
RVRLADPGGK	10	Unmodified	_RVRLADPGGK_					0	0	0			REV__ENST00000488765.1_1_13:113750615-113750798:+|nuORF	REV__ENST00000488765.1_1_13:113750615-113750798:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8180541992188	2	534.817264	1067.61998	1.8587	0.00099406	-0.89043	-0.00047622	0.96826	0.00051784	534.816715621909	14.248	0.2702	14.248	14.088	14.358	0					12	5	3	0	0	0	0.6796	1	3515	3515		24.519	1.9395	1	191510	+		34245	14459	23764	23844	34662	34662					0.08887058694335792
RVRLDLGG	8	Unmodified	_RVRLDLGG_					0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2666320800781	2	443.266876	884.519199	-0.90146	-0.00039959	0.81315	0.00036044	-0.088305	-3.9143E-05	443.2671020660854	49.508	0.2836	49.508	49.429	49.713	0					21	17	2	0	0	0	0.68754	1	14966	14966		35.201	0	1	49999	+		34246	16973	23765	23845	34663	34663					0.07232026711483286
RVRNLQHF	8	Unmodified	_RVRNLQHF_					0	0	0		PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant;PLXNB3|p.G1176Afs*22|1|0.15|ENSG00000198753|chrX:153774191-153774191|G/-|frameshift_variant;PLXNB3|p.V1655Cfs*7|1|0.56|ENSG00000198753|chrX:153777236-153777236|G/-|frameshift_variant;ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant	PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3060913085938	2	535.304324	1068.5941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.871	1	45.871	45.371	46.371	0								0	0	0	1.7419	1	17705	17705		26.796	1.222	1				34247	7602	23766	23846	34664	34664					0.06254209242683828
RVRNSNNLK	9	Unmodified	_RVRNSNNLK_					0	0	0		ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8206176757812	2	550.817796	1099.62104	1.8472	0.0010175	2.2811	0.0012565	4.1284	0.002274	550.8190281988471	35.174	0.25023	35.174	35.092	35.342	0					12	8	2	0	0	0	0.28897	1	12503	12503		51.193	1.6567	1	166670			34248	3752	23767	23847	34665	34665					0.07521273063207445
RVRQASVADYE	11	Unmodified	_RVRQASVADYE_					0	0	0		nc|ENSG00000164904|P49419-4|ALDH7A1;ALDH7A1|p.E507Gfs*5|1|0.1|ENSG00000164904|chr5:126546371-126546372|-/T|frameshift_variant;nc|ENSG00000164904|P49419-2|ALDH7A1;ENSG00000164904|ENST00000409134|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	647.330810546875	2	647.330933	1292.64731	0.37	0.00023951	-0.44132	-0.00028568	-0.071313	-4.6163E-05	647.3306964179818	22.882	0.45854	22.882	22.676	23.134	0					37	11	5	0	0	0	0.44903	1	7465	7465		47.96	1.9873	1	6701600			34249	114	23768	23848	34666	34666					0.012694974440591977
RVRQASVADYE	11	Unmodified	_RVRQASVADYE_					0	0	0		nc|ENSG00000164904|P49419-4|ALDH7A1;ALDH7A1|p.E507Gfs*5|1|0.1|ENSG00000164904|chr5:126546371-126546372|-/T|frameshift_variant;nc|ENSG00000164904|P49419-2|ALDH7A1;ENSG00000164904|ENST00000409134|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	647.3311767578125	2	647.330933	1292.64731	-0.80948	-0.000524	0.9335	0.00060428	0.12402	8.028E-05	647.3314864482533	22.598	0.33157	22.598	22.47	22.801	0					34	11	4	0	0	0	0.58789	1	6656	6656		37.812	37.812	1	633700			34250	114	23768	23848	34667	34667					0.012694974440591977
RVRWSLNRK	9	Unmodified	_RVRWSLNRK_					0	0	0			REV__MMP17|p.D221Tfs*36|1|0.5|ENSG00000198598|chr12:131840808-131840808|G/-|frameshift_variant	REV__MMP17|p.D221Tfs*36|1|0.5|ENSG00000198598|chr12:131840808-131840808|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.8666381835938	2	607.86508	1213.71561	1.7266	0.0010495	0.77356	0.00047022	2.5002	0.0015198	607.8655715863764	20.131	0.16695	20.131	20.028	20.195	0					9	3	4	0	0	0	0.3269	1	6471	6471		49.442	49.442	1	334380	+		34251	17410	23769	23849	34668	34668					0.11729831605225627
RVSECLRVLK	10	Carbamidomethyl (C)	_RVSEC(Carbamidomethyl (C))LRVLK_	RVSEC(1)LRVLK		RVSEC(92)LRVLK		0	1	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.5797119140625	3	420.579935	1258.71798	0.41163	0.00017312	-1.0699	-0.00044999	-0.6583	-0.00027687	420.57965992577243	24.333	0.20027	24.333	24.277	24.478	0					7	4	3	0	0	0	0.11826	1	8187	8187		92.239	37.517	1	501250			34252	5241	23770	23850	34669	34669	213				0.09896499227988897
RVSECLRVLK	10	Carbamidomethyl (C)	_RVSEC(Carbamidomethyl (C))LRVLK_	RVSEC(1)LRVLK		RVSEC(74)LRVLK		0	1	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.57965087890625	3	420.579935	1258.71798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.293	1	24.293	23.793	24.793	0								0	0	0	0.12977	1	8485	8485		73.841	8.5635	1				34253	5241	23770	23850	34670	34670	213				0.09896499227988897
RVSECLRVLK	10	Unmodified	_RVSECLRVLK_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.5726318359375	3	401.57278	1201.69651	-0.60201	-0.00024175	0.30847	0.00012387	-0.29355	-0.00011788	401.57283534414825	26.159	0.51867	26.159	26.051	26.57	0					13	10	2	0	0	0	0.5276	1	9222	9222		42.338	2.2799	1	180890			34254	5241	23770	23851	34671	34671					0.10373114199296651
RVSEVLQNR	9	Unmodified	_RVSEVLQNR_					0	0	0		ENST00000485936.5_1_20:25203457-25206230:+|nuORF;ENST00000471478.1_1_20:25196340-25204798:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.81298828125	2	550.812179	1099.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.646	1	20.646	20.146	21.146	0								0	0	0	0.058887	1	6723	6723		83.647	5.3832	1				34255	7476	23771	23852	34672	34672					0.06398450969095393
RVSEVLQNR	9	Unmodified	_RVSEVLQNR_					0	0	0		ENST00000485936.5_1_20:25203457-25206230:+|nuORF;ENST00000471478.1_1_20:25196340-25204798:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8120727539062	2	550.812179	1099.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.492	1	20.492	19.992	20.992	0								0	0	0	0.069826	1	5772	5772		80.455	24.021	1				34256	7476	23771	23852	34673	34673					0.06398450969095393
RVSEVLQNR	9	Unmodified	_RVSEVLQNR_					0	0	0		ENST00000485936.5_1_20:25203457-25206230:+|nuORF;ENST00000471478.1_1_20:25196340-25204798:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8126220703125	2	550.812179	1099.60981	1.8164	0.0010005	-1.0513	-0.00057909	0.76503	0.00042139	550.8116019655564	20.634	0.31614	20.634	20.427	20.743	0					12	6	4	0	0	0	0.25761	1	6601	6601		54.722	11.858	1	561210			34257	7476	23771	23852	34674	34674					0.06398450969095393
RVSGALKVH	9	Unmodified	_RVSGALKVH_					0	0	0			REV__ENST00000274137.9_1_5:1816033-1816159:+|nuORF	REV__ENST00000274137.9_1_5:1816033-1816159:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7954406738281	2	483.795801	965.577048	-0.097088	-4.6971E-05	-0.37127	-0.00017962	-0.46835	-0.00022659	483.7956336501036	22.923	0.36763	22.923	22.66	23.028	0					15	7	3	0	0	0	0.36135	1	7766	7766		45.972	5.1941	1	273310	+		34258	18112	23772	23853	34675	34675					0.09288288636889774
RVSNVDHNK	9	Unmodified	_RVSNVDHNK_					0	0	0		OBSL1-MRPL2|1|fusion;ENST00000485654.1_1_6:43022014-43023405:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2	OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7811889648438	2	534.780879	1067.5472	0.70877	0.00037904	0.77202	0.00041286	1.4808	0.0007919	534.7812380200886	11.883	0.1375	11.883	11.813	11.951	0					10	4	3	0	0	0	0.16806	1	2388	2388		65.465	14.13	1	580650			34259	11869	23773	23854	34676	34676					0.01613304900888579
RVSNVKSVYK	10	Unmodified	_RVSNVKSVYK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.8996887207031	3	393.899662	1178.67716	0.89252	0.00035157	-1.0377	-0.00040876	-0.1452	-5.7196E-05	393.89934800858475	17.502	0.24701	17.502	17.421	17.668	0					9	6	2	0	0	0	0.46192	1	4964	4964		49.466	14.288	1	604800			34260	2305	23774	23855	34677	34677					0.09496481180030969
RVSNVKSVYK	10	Unmodified	_RVSNVKSVYK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.8995666503906	3	393.899662	1178.67716	-0.66061	-0.00026021	0.48613	0.00019149	-0.17448	-6.8726E-05	393.89976945654934	17.438	0.20458	17.438	17.342	17.547	0					6	4	2	0	0	0	0.51765	1	5043	5043		43.419	14.842	1	324210			34261	2305	23774	23855	34678	34678					0.09496481180030969
RVSRFDKK	8	Unmodified	_RVSRFDKK_					0	0	0			REV__nc|ENSG00000188157|O00468-2|AGRN	REV__nc|ENSG00000188157|O00468-2|AGRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.307373046875	2	518.306532	1034.59851	0.1049	5.437E-05	1.713	0.00088785	1.8179	0.00094222	518.3073771512961	14.224	0.086264	14.224	14.142	14.228	0					6	4	2	0	0	0	0.46905	1	3038	3038		63.306	5.0763	1	189980	+		34262	17158	23775	23856	34679	34679					0.08259673665611444
RVSSQLIQ	8	Unmodified	_RVSSQLIQ_					0	0	0		ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant;ENSG00000180787|ENST00000318833|ZFP3	ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant	ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7725524902344	2	465.771991	929.529429	0.066738	3.1085E-05	-0.51973	-0.00024207	-0.45299	-0.00021099	465.7717758123955	17.761	0.2632	17.761	17.627	17.89	0					12	7	3	0	0	0	0.51384	1	4285	4285		58.782	5.4305	1	99268			34263	6817	23776	23857	34680	34680					0.06184589646045424
RVSSQLIQ	8	Unmodified	_RVSSQLIQ_					0	0	0		ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant;ENSG00000180787|ENST00000318833|ZFP3	ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant	ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7716979980469	2	465.771991	929.529429	4.0625	0.0018922	-4.1387	-0.0019277	-0.076248	-3.5514E-05	465.77002135581625	17.784	0.14878	17.784	17.666	17.815	0					8	4	2	0	0	0	0.43813	1	4530	4530		66.429	2.222	1	101420			34264	6817	23776	23857	34681	34681					0.06184589646045424
RVSSQLIQ	8	Unmodified	_RVSSQLIQ_					0	0	0		ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant;ENSG00000180787|ENST00000318833|ZFP3	ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant	ZFP3|p.R273I|1|0.35|ENSG00000180787|chr17:5092322-5092322|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.771728515625	2	465.771991	929.529429	-0.13669	-6.3666E-05	-0.4723	-0.00021998	-0.60899	-0.00028365	465.7718109847664	18.013	0.21761	18.013	17.904	18.122	0					7	4	2	0	0	0	0.3961	1	5463	5463		71.296	0	1	1250800			34265	6817	23776	23857	34682	34682					0.06184589646045424
RVSTEVTLAVK	11	Unmodified	_RVSTEVTLAVK_					0	0	0		ENSG00000211456|ENST00000389061|SACM1L;ENST00000438671.3_1_3:45731844-45750997:+|nuORF;ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;SACM1L|p.N346Ifs*2|1|0.35|ENSG00000211456|chr3:45732084-45732084|A/-|frameshift_variant	ENSG00000211456|ENST00000389061|SACM1L	ENSG00000211456|ENST00000389061|SACM1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.859130859375	2	601.858795	1201.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.421	1	27.421	26.921	27.921	0								0	0	0	0.34574	1	9576	9576		36.318	1.1394	1				34266	7775	23777	23858	34683	34683					0.11025330631650831
RVSTEVTLAVK	11	Unmodified	_RVSTEVTLAVK_					0	0	0		ENSG00000211456|ENST00000389061|SACM1L;ENST00000438671.3_1_3:45731844-45750997:+|nuORF;ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;SACM1L|p.N346Ifs*2|1|0.35|ENSG00000211456|chr3:45732084-45732084|A/-|frameshift_variant	ENSG00000211456|ENST00000389061|SACM1L	ENSG00000211456|ENST00000389061|SACM1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.8596801757812	2	601.858795	1201.70304	1.5883	0.00095595	-0.58582	-0.00035258	1.0025	0.00060337	601.8583299241973	27.33	0.2191	27.33	27.27	27.49	0					6	4	2	0	0	0	0.4145	1	9903	9903		48.602	12.284	1	104580			34267	7775	23777	23858	34684	34684					0.11025330631650831
RVSVVAEPK	9	Unmodified	_RVSVVAEPK_					0	0	0		ENST00000560403.5_1_14:24610645-24610756:-|nuORF;ENST00000216799.8_1_14:24610479-24610756:-|nuORF	ENST00000560403.5_1_14:24610645-24610756:-|nuORF	ENST00000560403.5_1_14:24610645-24610756:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7952575683594	2	492.795466	983.57638	0.78354	0.00038613	-1.0833	-0.00053382	-0.29971	-0.0001477	492.7949653079628	19.929	0.38701	19.929	19.823	20.21	0					18	8	4	0	0	0	0.029571	1	6109	6109		109.44	29.5	1	2568600			34268	8166	23778	23859	34685	34685					0.08393449197183145
RVSVVAEPK	9	Unmodified	_RVSVVAEPK_					0	0	0		ENST00000560403.5_1_14:24610645-24610756:-|nuORF;ENST00000216799.8_1_14:24610479-24610756:-|nuORF	ENST00000560403.5_1_14:24610645-24610756:-|nuORF	ENST00000560403.5_1_14:24610645-24610756:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7951354980469	2	492.795466	983.57638	-0.60004	-0.0002957	-0.19966	-9.8391E-05	-0.7997	-0.00039409	492.7954528398614	19.846	0.27033	19.846	19.741	20.011	0					15	5	4	0	0	0	0.040209	1	6196	6196		99.013	5.8697	1	1579500			34269	8166	23778	23859	34686	34686					0.08393449197183145
RVTDIIMQK	9	Unmodified	_RVTDIIMQK_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3161010742188	2	552.315709	1102.61686	0.78296	0.00043244	-0.0059296	-3.275E-06	0.77703	0.00042916	552.3157396306818	28.818	0.16656	28.818	28.758	28.925	0					5	3	2	0	0	0	0.14578	1	10499	10499		68.846	5.3123	1	187760			34270	4303	23779	23860	34687	34687					0.06966047525315844
RVTDLFIGK	9	Unmodified	_RVTDLFIGK_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.811767578125	2	524.811116	1047.60768	1.0017	0.00052571	0.31119	0.00016331	1.3129	0.00068902	524.811169323646	34.315	0.32629	34.315	34.225	34.552	0					13	8	2	0	0	0	0.12834	1	13212	13212		72.879	3.2516	1	154680			34271	6598	23780	23861	34688	34688					0.08578022231290561
RVTKTTTK	8	Unmodified	_RVTKTTTK_					0	0	0			REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|45|1|sense	REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|45|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7890625	2	467.787641	933.56073	3.9935	0.0018681	0.15545	7.2716E-05	4.1489	0.0019408	467.78759754853803	24.773	0.17572	24.773	24.683	24.859	0					13	6	3	0	0	0	0.66372	1	7618	7618		38.806	3.1879	1	166170	+		34272	20828	23781	23862	34689	34689					0.09129162680119407
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.9095764160156	3	367.90961	1100.707	0.47978	0.00017652	-0.51624	-0.00018993	-0.036461	-1.3414E-05	367.90935623048944	25.33	0.49957	25.33	25.186	25.686	0					41	17	4	0	0	0	0.063171	2	7580	7580;7722		86.882	49.373	1	411090			34273	6574	23782	23863	34690;34691	34690					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.3605346679688	2	551.360776	1100.707	1.5055	0.00083008	-0.45937	-0.00025328	1.0461	0.0005768	551.3605966304845	25.317	0.21261	25.317	25.226	25.438	0					13	7	2	0	0	0	0.30841	1	7598	7598		49.536	13.918	1	95110			34274	6574	23782	23863	34692	34692					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.9095764160156	3	367.90961	1100.707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.372	1	25.372	24.872	25.872	0								0	0	0	0.13425	1	7886	7886		61.765	19.426	1				34275	6574	23782	23863	34693	34693					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.91009521484375	3	367.90961	1100.707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.394	1	25.394	24.894	25.894	0								0	0	0	0.18645	1	7895	7895		51.528	8.6635	1				34276	6574	23782	23863	34694	34694					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.9094543457031	3	367.90961	1100.707	0.26817	9.8662E-05	-0.33633	-0.00012374	-0.068163	-2.5078E-05	367.9094114515535	25.539	0.69129	25.539	25.409	26.101	0					25	12	3	0	0	0	0.063171	1	9074	9074		77.533	40.025	1	577270			34277	6574	23782	23863	34695	34695					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.36083984375	2	551.360776	1100.707	0.44464	0.00024516	0.5998	0.00033071	1.0444	0.00057586	551.3611079431938	25.559	0.59094	25.559	25.409	26	0					25	10	4	0	0	0	0.14578	1	9075	9075		68.846	26.45	1	806200			34278	6574	23782	23863	34696	34696					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.90936279296875	3	367.90961	1100.707	0.35831	0.00013182	-0.37093	-0.00013647	-0.012624	-4.6444E-06	367.90946247824843	25.444	0.53977	25.444	25.31	25.85	0					23	12	3	0	0	0	0.063171	1	8063	8063		77.533	32.511	1	176110			34279	6574	23782	23863	34697	34697					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.3617553710938	2	551.360776	1100.707	1.8325	0.0010104	-0.33182	-0.00018295	1.5007	0.00082742	551.3606325775191	25.44	0.25093	25.44	25.31	25.561	0					11	6	2	0	0	0	0.27123	1	8082	8082		53.089	10.693	1	80215			34280	6574	23782	23863	34698	34698					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.90948486328125	3	367.90961	1100.707	-0.11004	-4.0484E-05	0.13449	4.9478E-05	0.024448	8.9948E-06	367.9096380388778	25.435	0.79705	25.435	25.296	26.093	0					34	17	3	0	0	0	0.085655	1	8076	8076		79.489	34.467	1	440720			34281	6574	23782	23863	34699	34699					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.9095458984375	3	367.90961	1100.707	-0.19579	-7.2032E-05	0.039397	1.4495E-05	-0.15639	-5.7537E-05	367.9096204152157	25.522	1.6038	25.522	25.315	26.919	0					70	30	5	0	0	0	0.037712	2	8909	8909;9125		107.45	69.947	1	8665500			34282	6574	23782	23863	34700;34701	34700					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.3610229492188	2	551.360776	1100.707	0.71063	0.00039181	-0.10174	-5.6098E-05	0.60889	0.00033572	551.3606947026459	25.522	0.85228	25.522	25.315	26.168	0					33	15	4	0	0	0	0.25761	1	8914	8914		54.722	8.7704	1	1746000			34283	6574	23782	23863	34702	34702					0.16067464916045537
RVTSDIKK	8	Unmodified	_RVTSDIKK_					0	0	0			REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.78936767578125	2	473.787641	945.56073	2.3806	0.0011279	1.1733	0.00055589	3.5539	0.0016838	473.7881473931668	31.893	0.36734	31.893	31.735	32.102	0					18	7	4	0	0	0	0.63077	1	11958	11958		44.117	44.117	1	1730600	+		34284	14715	23783	23864	34703	34703					0.08577162680126094
RVTSVLYGL	9	Unmodified	_RVTSVLYGL_					0	0	0			REV__PCDH17|p.N765Mfs*16|1|0.55|ENSG00000118946|chr13:57634836-57634836|A/-|frameshift_variant	REV__PCDH17|p.N765Mfs*16|1|0.55|ENSG00000118946|chr13:57634836-57634836|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.162	1	47.162	46.662	47.662	0								0	0	0	0.35507	1	18845	18845		24.519	2.8334	1		+		34285	14229	23784	23865	34704	34704					0.07810333339955378
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.2097473144531	3	345.209948	1032.60801	0.19593	6.7638E-05	-0.53149	-0.00018348	-0.33556	-0.00011584	345.20972098455155	15.114	0.38937	15.114	14.918	15.307	0					38	14	4	0	0	0	0.42902	1	3170	3170		38.754	10.871	1	871170			34286	3083	23785	23866	34705	34705					0.09301441951129163
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.3124389648438	2	517.311284	1032.60801	1.2097	0.00062579	0.090545	4.684E-05	1.3002	0.00067263	517.3113548456337	15.217	0.27282	15.217	15.02	15.293	0					24	10	3	0	0	0	0.17854	1	3318	3318		64.207	16.292	1	464250			34287	3083	23785	23866	34706	34706					0.09301441951129163
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.3118286132812	2	517.311284	1032.60801	0.22275	0.00011523	-0.073009	-3.7768E-05	0.14974	7.7462E-05	517.3111864604241	15.322	0.85071	15.322	15.063	15.913	0					41	17	5	0	0	0	0.056004	1	3954	3954		93.143	2.3666	1	5502800			34288	3083	23785	23866	34707	34707					0.09301441951129163
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.3115844726562	2	517.311284	1032.60801	1.5534	0.0008036	-0.8567	-0.00044318	0.69673	0.00036042	517.3108593838987	15.356	0.26741	15.356	15.146	15.414	0					15	5	4	0	0	0	0.28504	1	4017	4017		51.528	0.1923	1	1295700			34289	3083	23785	23866	34708	34708					0.09301441951129163
RVVAVSPQM	9	Oxidation (M)	_RVVAVSPQM(Oxidation (M))_		RVVAVSPQM(1)		RVVAVSPQM(61)	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7481994628906	2	501.773677	1001.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.261	1	38.261	37.761	38.761	0								0	0	0	0.14517	1	14532	14532		60.972	7.6205	1				34290	7354	23786	23867	34709	34709		295			0.032095164284100974
RVVDGKDLTTK	11	Unmodified	_RVVDGKDLTTK_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant;ENST00000438741.1_1_3:10076402-10082221:+|nuORF	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.2384033203125	3	411.238343	1230.6932	1.0098	0.00041527	-0.87709	-0.00036069	0.13271	5.4574E-05	411.23803693255337	19.086	0.22749	19.086	19.004	19.231	0					7	5	2	0	0	0	0.70078	1	5711	5711		27.554	4.1758	1	339570			34291	4622	23787	23868	34710	34710					0.08708142626255722
RVVEGRLLA	9	Unmodified	_RVVEGRLLA_					0	0	0		ENST00000529590.5_1_11:68034666-68035676:-|nuORF	ENST00000529590.5_1_11:68034666-68035676:-|nuORF	ENST00000529590.5_1_11:68034666-68035676:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.8170471191406	2	506.816733	1011.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.587	1	30.587	30.087	31.087	0								0	0	0	0.29774	1	10063	10063		35.618	4.0885	1				34292	10411	23788	23869	34711	34711					0.1135684432541666
RVVIESLQK	9	Unmodified	_RVVIESLQK_					0	0	0			REV__ENSG00000137494|ENST00000533342|ANKRD42	REV__ENSG00000137494|ENST00000533342|ANKRD42	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3294677734375	2	536.329673	1070.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.052	1	13.052	12.552	13.552	0								0	0	0	0.3368	1	2934	2934		27.882	0	1		+		34293	14923	23789	23870	34712	34712					0.11229693777045213
RVVIWPFSN	9	Unmodified	_RVVIWPFSN_					0	0	0		ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099304199219	3	373.209948	1116.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.318	1	48.318	47.818	48.818	0								0	0	0	0.3368	1	19210	19210		21.686	0	1				34294	4529	23790	23871	34713	34713					0.05437441951130495
RVVKEEKYQLK	11	Unmodified	_RVVKEEKYQLK_					0	0	0		TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	710.4178466796875	2	710.419551	1418.82455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.917	1	39.917	39.417	40.417	0								0	0	0	0.45674	1	15715	15715		22.58	0.89391	1				34295	23079	23791	23872	34714	34714					0.13188952994187275
RVVMEQQLKK	10	Oxidation (M)	_RVVM(Oxidation (M))EQQLKK_		RVVM(1)EQQLKK		RVVM(73)EQQLKK	0	0	1		ENSG00000198825|ENST00000650623|INPP5F;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.5796203613281	3	425.579823	1273.71764	0.3008	0.00012802	-0.69516	-0.00029585	-0.39436	-0.00016783	425.57950573531326	20	0.10854	20	19.97	20.079	0					7	3	3	0	0	0	0.2538	1	5287	5287		72.879	11.188	1	111220			34296	7615	23792	23873	34715	34715		306			0.09173079508150295
RVVPGAGA	8	Unmodified	_RVVPGAGA_					0	0	0			REV__PANX2|p.A274V|1|0.62|ENSG00000073150|chr22:50177533-50177533|C/T|missense_variant	REV__PANX2|p.A274V|1|0.62|ENSG00000073150|chr22:50177533-50177533|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.7165222167969	2	363.716488	725.418422	0.10019	3.6443E-05	-0.55424	-0.00020159	-0.45405	-0.00016514	363.7163480731379	14.682	0.11604	14.682	14.621	14.738	0					7	4	2	0	0	0	0.74117	1	3058	3058		28.254	5.2176	1	182840	+		34297	21337	23793	23874	34716	34716					0.044729947286214156
RVVPGAGA	8	Unmodified	_RVVPGAGA_					0	0	0			REV__PANX2|p.A274V|1|0.62|ENSG00000073150|chr22:50177533-50177533|C/T|missense_variant	REV__PANX2|p.A274V|1|0.62|ENSG00000073150|chr22:50177533-50177533|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.7164306640625	2	363.716488	725.418422	0.47744	0.00017365	-0.59007	-0.00021462	-0.11262	-4.0964E-05	363.7163330165169	14.938	0.31151	14.938	14.851	15.162	0					14	7	3	0	0	0	0.74117	1	3759	3759		28.254	5.2176	1	639570	+		34298	21337	23793	23874	34717	34717					0.044729947286214156
RVVSSSMKK	9	Unmodified	_RVVSSSMKK_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.29302978515625	2	511.294776	1020.575	-1.7602	-0.00089999	-2.0383	-0.0010422	-3.7986	-0.0019422	511.2939437364485	21.018	0.1721	21.018	20.936	21.108	0					6	4	2	0	0	0	0.19605	1	6025	6025		62.107	1.9892	1	209650	+		34299	16376	23794	23875	34718	34718					0.06553491836791636
RVWDVESGSLK	11	Unmodified	_RVWDVESGSLK_					0	0	0		ENST00000463824.1_1_2:203749090-203749249:-|nuORF;ENST00000477727.5_1_2:203748882-203757354:-|nuORF;ENSG00000138442|ENST00000261015|WDR12	ENST00000463824.1_1_2:203749090-203749249:-|nuORF	ENST00000463824.1_1_2:203749090-203749249:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	638.3385620117188	2	638.338227	1274.6619	-0.1053	-6.7217E-05	0.70502	0.00045004	0.59972	0.00038282	638.3385193745461	31.675	0.21726	31.675	31.617	31.835	0					7	4	2	0	0	0	0.16013	1	11880	11880		79.07	10.224	1	171870			34300	4261	23795	23876	34719	34719					0.03555569592185748
RVYAENAIRKK	11	Unmodified	_RVYAENAIRKK_					0	0	0		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.93292236328125	3	449.933366	1346.77827	-0.39988	-0.00017992	-0.20171	-9.0755E-05	-0.60158	-0.00027067	449.93311989984016	17.098	0.2709	17.098	17.039	17.31	0					12	5	3	0	0	0	0.34891	1	4882	4882		57.149	13.73	1	728810			34301	3704	23796	23877	34720	34720					0.11874932882710709
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7874450683594	2	497.787641	993.56073	0.19254	9.5844E-05	-0.48707	-0.00024246	-0.29453	-0.00014661	497.7873720424349	20.346	0.32895	20.346	20.239	20.568	0					19	10	4	0	0	0	0.0097668	1	5423	5423		141.52	39.92	1	1526200			34302	6220	23797	23878	34721	34721					0.06369162680118734
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7875061035156	2	497.787641	993.56073	-0.025609	-1.2748E-05	0.50937	0.00025356	0.48376	0.00024081	497.7880186142573	20.587	1.2133	20.587	20.478	21.692	0					49	24	3	0	0	0	0.011389	1	6680	6680		138.06	36.462	1	19548000			34303	6220	23797	23878	34722	34722					0.06369162680118734
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7840576171875	2	497.787641	993.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.45	1	20.45	19.95	20.95	0								0	0	0	0.11159	1	5752	5752		68.846	6.7387	1				34304	6220	23797	23878	34723	34723					0.06369162680118734
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7874755859375	2	497.787641	993.56073	-0.7187	-0.00035776	0.50364	0.0002507	-0.21507	-0.00010706	497.7879874175944	20.6	1.159	20.6	20.494	21.653	0					47	23	5	0	0	0	0.020674	2	6555	6533;6555		120.87	19.268	1	19173000			34305	6220	23797	23878	34724;34725	34725					0.06369162680118734
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7871398925781	2	497.787641	993.56073	1.01	0.00050278	-2.1181	-0.0010544	-1.1081	-0.00055159	497.78649565784326	20.583	0.16461	20.583	20.477	20.642	0					6	3	2	0	0	0	0.15163	1	6576	6576		67.494	4.1874	1	760600			34306	6220	23797	23878	34726	34726					0.06369162680118734
RVYGQAAAFL	10	Unmodified	_RVYGQAAAFL_					0	0	0		ENST00000420563.1_1_2:220267408-220267630:+|nuORF	ENST00000420563.1_1_2:220267408-220267630:+|nuORF	ENST00000420563.1_1_2:220267408-220267630:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.3014526367188	2	548.300916	1094.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.169	1	36.169	35.669	36.669	0								0	0	0	0.4201	1	14030	14030		21.96	1.013	1				34307	9395	23798	23879	34727	34727					0.04376851571464613
RVYGQPSTK	9	Unmodified	_RVYGQPSTK_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2833862304688	2	518.282723	1034.55089	1.0646	0.00055177	-0.88007	-0.00045612	0.18455	9.5649E-05	518.282847823134	16.289	0.16646	16.289	16.23	16.396	0					7	3	3	0	0	0	0.44593	1	4640	4640		37.812	1.3648	1	156810			34308	6283	23799	23880	34728	34728					0.03499974674741679
RWAGGRVR	8	Unmodified	_RWAGGRVR_					0	0	0			REV__ENST00000322177.5_1_15:75249143-75249248:-|nuORF	REV__ENST00000322177.5_1_15:75249143-75249248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7794189453125	2	479.278109	956.541666	-0.31461	-0.00015078	-0.31603	-0.00015147	-0.63063	-0.00030225	479.2779469436534	48.349	0.98209	48.349	47.997	48.979	0					79	60	2	0	0	0	0.70055	1	16024	16024		33.516	4.3455	1	72662	+		34309	18332	23800	23881	34729	34729					0.06165670899747511
RWAGLPRP	8	Unmodified	_RWAGLPRP_					0	0	0		ENST00000497512.5_1_4:78078410-78106259:+|nuORF	ENST00000497512.5_1_4:78078410-78106259:+|nuORF	ENST00000497512.5_1_4:78078410-78106259:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7753601074219	2	476.777411	951.540269	-1.5107	-0.00072028	-0.46165	-0.0002201	-1.9724	-0.00094039	476.77726550830556	38.316	0.29253	38.316	38.168	38.46	0					20	15	2	0	0	0	0.65276	1	12896	12896		40.573	3.5441	1	61393			34310	10128	23801	23882	34730	34730					0.06256036810975729
RWAHSQQRQDP	11	Unmodified	_RWAHSQQRQDP_					0	0	0		ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS14|p.L379*|1|0.38|ENSG00000138316|chr10:70732282-70732282|C/-|frameshift_variant	ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	704.8464965820312	2	704.845073	1407.67559	-0.85679	-0.0006039	0.53026	0.00037375	-0.32653	-0.00023015	704.8454484756094	23.691	0.19327	23.691	23.612	23.805	0					10	6	2	0	0	0	0.74306	1	7152	7152		23.523	0	1	85194			34311	57	23802	23883	34731	34731					-0.01193759856005272
RWCIWVQY	8	Unmodified	_RWCIWVQY_					0	0	0			REV__ENST00000545307.6_1_14:58666901-58669614:+|nuORF	REV__ENST00000545307.6_1_14:58666901-58669614:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.2830200195312	2	577.284211	1152.55387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.031	1	32.031	31.531	32.531	0								0	0	0	1.7419	1	10328	10328		33.516	5.6333	1		+		34312	20160	23803	23884	34732	34732					-0.016304734720961278
RWIALVSM	8	Unmodified	_RWIALVSM_					0	0	0			REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.28070068359375	2	488.275855	974.537157	0.75798	0.0003701	3.5183	0.0017179	4.2762	0.002088	488.28024570913504	36.429	0.47714	36.429	36.247	36.724	0					41	13	4	0	0	0	0.25001	2	13746	13708;13746		101.21	17.924	1	796400	+		34313	16928	23804	23885	34733;34734	34734					0.04887025641960463
RWKVKRWD	8	Unmodified	_RWKVKRWD_					0	0	0			REV__ENST00000377681.7_1_20:18123344-18123419:+|nuORF	REV__ENST00000377681.7_1_20:18123344-18123419:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3336791992188	2	587.335624	1172.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.335	1	19.335	18.835	19.835	0								0	0	0	1.7419	1	6094	6094		24.203	0.68005	1		+		34314	18736	23805	23886	34735	34735					0.07727355310885287
RWLANEQM	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))RWLANEQM_					1	0	0			REV__ENST00000522160.1_1_8:106431454-106463811:+|nuORF	REV__ENST00000522160.1_1_8:106431454-106463811:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.8443603515625	3	363.843048	1088.50731	3.5805	0.0013027	-0.23768	-8.648E-05	3.3428	0.0012163	363.84307793663714	20.179	0.10389	20.179	20.128	20.232	0					10	3	4	0	0	0	0.54629	1	5597	5597		56.721	18.91	1	283690	+		34315	19965	23806	23887	34736	34736					-0.03339958094011308
RWPLILYQ	8	Unmodified	_RWPLILYQ_					0	0	0		WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant	WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant	WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8167114257812	2	544.816202	1087.61785	1.8706	0.0010191	-1.4987	-0.00081652	0.37187	0.0002026	544.815677262224	13.785	0.16509	13.785	13.705	13.87	0					11	4	3	0	0	0	0.64144	1	3212	3212		31.955	0	1	174750			34316	23117	23807	23888	34737	34737					0.07754629956502868
RWRPSSPQ	8	Unmodified	_RWRPSSPQ_					0	0	0		ENST00000438189.6_1_11:67226126-67226375:+|nuORF	ENST00000438189.6_1_11:67226126-67226375:+|nuORF	ENST00000438189.6_1_11:67226126-67226375:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2691650390625	2	507.267407	1012.52026	2.9386	0.0014907	2.2903	0.0011618	5.2289	0.0026525	507.26855104476004	11.959	0.13205	11.959	11.882	12.014	0					5	3	2	0	0	0	0.30437	1	2443	2443		82.305	12.677	1	388760			34317	9544	23808	23889	34738	34738					0.01450241080374326
RWTKGRKQ	8	Unmodified	_RWTKGRKQ_					0	0	0		ENST00000323851.11_1_8:134250879-134250972:-|nuORF	ENST00000323851.11_1_8:134250879-134250972:-|nuORF	ENST00000323851.11_1_8:134250879-134250972:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.8768615722656	3	353.877192	1058.60975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.599	1	12.599	12.099	13.099	0								0	0	0	1.7419	1	2687	2687		44.377	1.5129	1				34318	8633	23809	23890	34739	34739					0.0827849575973687
RWTKSTQRTQ	10	Unmodified	_RWTKSTQRTQ_					0	0	0			REV__ENST00000567224.1_1_15:53809927-53815498:-|nuORF	REV__ENST00000567224.1_1_15:53809927-53815498:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.2354736328125	3	431.233704	1290.67928	3.265	0.001408	-1.7792	-0.00076727	1.4858	0.00064072	431.23332104374754	18.952	0.26807	18.952	18.871	19.139	0					13	8	2	0	0	0	0.64646	1	5082	5082		28.577	2.5133	1	97495	+		34319	20352	23810	23891	34740	34740					0.04556909917823759
RWTSHTPS	8	Unmodified	_RWTSHTPS_					0	0	0			REV__nc|ENSG00000063322|Q9NX70-2|MED29	REV__nc|ENSG00000063322|Q9NX70-2|MED29	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2398681640625	2	486.238316	970.462078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.276	1	15.276	14.776	15.776	0								0	0	0	1.7419	1	3296	3296		30.504	0	1		+		34320	20931	23811	23892	34741	34741					-0.024334405649142354
RWTSHTPS	8	Unmodified	_RWTSHTPS_					0	0	0			REV__nc|ENSG00000063322|Q9NX70-2|MED29	REV__nc|ENSG00000063322|Q9NX70-2|MED29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2400817871094	2	486.238316	970.462078	-0.087248	-4.2423E-05	2.6522	0.0012896	2.5649	0.0012472	486.23971172089597	15.543	0.31778	15.543	15.385	15.702	0					12	6	3	0	0	0	0.46905	1	4257	4257		63.306	11.007	1	375690	+		34321	20931	23811	23892	34742	34742					-0.024334405649142354
RWVRSFGPLGW	11	Unmodified	_RWVRSFGPLGW_					0	0	0			REV__ENST00000564747.1_1_16:27473425-27473950:-|nuORF	REV__ENST00000564747.1_1_16:27473425-27473950:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2452087402344	3	454.247285	1359.72002	-0.42075	-0.00019112	-3.0257	-0.0013744	-3.4464	-0.0015655	454.2464996098722	23.989	1.0107	23.989	23.585	24.595	0					50	20	4	0	0	0	0.58789	1	8221	8221		39.873	1.1591	1	12419000	+		34322	20328	23812	23893	34743	34743					0.054552960281398555
RYAEEVGIF	9	Unmodified	_RYAEEVGIF_					0	0	0		ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF	ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2776489257812	2	542.277106	1082.53966	3.5825	0.0019427	-3.3599	-0.001822	0.22256	0.00012069	542.2754923399323	41.835	0.1747	41.835	41.703	41.878	0					12	5	3	0	0	0	0.41113	1	16673	16673		40.778	6.6056	1	129400			34323	1901	23813	23894	34744	34744					0.0016915258061089844
RYALQMEQL	9	Unmodified	_RYALQMEQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.2975463867188	2	576.297516	1150.58048	0.94234	0.00054307	-1.0391	-0.0005988	-0.096706	-5.5732E-05	576.2967070025597	40.33	0.11742	40.33	40.273	40.391	0					11	7	2	0	0	0	0.22837	1	13042	13042		58.23	3.4536	1	41562			34324	2650	23814	23895	34745	34745					0.011211706285848777
RYALQMEQL	9	Unmodified	_RYALQMEQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.2977294921875	2	576.297516	1150.58048	-0.085774	-4.9432E-05	-0.056526	-3.2576E-05	-0.1423	-8.2007E-05	576.2976498010383	40.664	0.22492	40.664	40.556	40.781	0					23	10	3	0	0	0	0.0067848	1	15499	15499		150.36	51.78	1	681560			34325	2650	23814	23895	34746	34746					0.011211706285848777
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(94)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.2958374023438	2	584.294973	1166.57539	0.029888	1.7463E-05	0.59829	0.00034958	0.62818	0.00036704	584.29534267658	33.147	0.3692	33.147	33.046	33.415	0					20	10	3	0	0	0	0.054723	1	12224	12224		93.598	35.368	1	469960			34326	2650	23814	23896	34747	34747		116			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(130)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.2959594726562	2	584.294973	1166.57539	3.2179	0.0018802	-2.0918	-0.0012223	1.1261	0.00065795	584.2937386739012	33.084	0.39381	33.084	32.988	33.382	0					13	8	2	0	0	0	0.017421	1	12550	12550		126.24	49.468	1	833810			34327	2650	23814	23896	34748	34748		116			-0.0012313323402395326
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF;CSNK1A1L|p.Q231Tfs*4|1|0.27|ENSG00000180138|chr13:37104566-37104567|-/T|frameshift_variant;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7830810546875	2	522.78289	1043.55123	1.6622	0.00086895	-0.9328	-0.00048765	0.72936	0.00038129	522.7824200559479	27.462	0.38462	27.462	27.335	27.72	0					20	9	4	0	0	0	0.15163	1	9586	9586		67.494	8.7117	1	1529400			34328	2819	23815	23897	34749	34749					0.031193943946163927
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7889404296875	2	537.788173	1073.56179	2.0751	0.001116	-1.2314	-0.00066222	0.84372	0.00045374	537.7874704579172	26.865	0.33715	26.865	26.76	27.097	0					21	8	3	0	0	0	0.15558	1	9321	9321		66.962	8.18	1	1412300			34329	698	23816	23898	34750	34750					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7883911132812	2	537.788173	1073.56179	1.8907	0.0010168	-1.9031	-0.0010235	-0.012373	-6.654E-06	537.7870179850506	26.88	0.40792	26.88	26.71	27.118	0					19	8	4	0	0	0	0.24334	1	9684	9684		56.434	3.0823	1	1582800			34330	698	23816	23898	34751	34751					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.788330078125	2	537.788173	1073.56179	1.0215	0.00054937	-0.60663	-0.00032624	0.4149	0.00022313	537.7875952221967	26.697	0.1491	26.697	26.639	26.788	0					8	3	3	0	0	0	0.12834	1	8645	8645		72.879	11.907	1	320600			34331	698	23816	23898	34752	34752					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7888793945312	2	537.788173	1073.56179	0.69555	0.00037406	0.51787	0.0002785	1.2134	0.00065256	537.7883260134461	26.86	0.36396	26.86	26.756	27.12	0					14	7	3	0	0	0	0.22837	1	9530	9530		58.23	10.573	1	1033100			34332	698	23816	23898	34753	34753					0.027953770490512397
RYATVVEPK	9	Unmodified	_RYATVVEPK_					0	0	0			REV__ENSG00000125414|ENST00000245503|MYH2	REV__ENSG00000125414|ENST00000245503|MYH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.8005981445312	2	531.800749	1061.58694	-1.2495	-0.00066448	2.5665	0.0013649	1.317	0.00070039	531.8022721190117	40.229	0.18462	40.229	40.13	40.315	0					16	9	2	0	0	0	0.3269	1	14283	14283		47.96	3.5823	1	146130	+		34333	14428	23817	23899	34754	34754					0.058614318515992636
RYCAPLAVI	9	Unmodified	_RYCAPLAVI_					0	0	0			REV__ENST00000256646.6_1_1:120457390-120457519:-|nuORF	REV__ENST00000256646.6_1_1:120457390-120457519:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2826843261719	2	503.281137	1004.54772	2.928	0.0014736	0.45788	0.00023044	3.3859	0.0017041	503.2814910409912	40.172	0.57745	40.172	39.718	40.295	0					17	13	2	0	0	0	0.30268	1	15938	15938		50.025	2.1089	1	202280	+		34334	17983	23818	23900	34755	34755					0.04563008296383941
RYDLYKQK	8	Unmodified	_RYDLYKQK_					0	0	0			REV__MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	REV__MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.3023681640625	2	557.306198	1112.59784	0.55417	0.00030884	-2.4349	-0.001357	-1.8807	-0.0010481	557.3048444004265	11.113	0.068455	11.113	11.07	11.138	0					5	3	2	0	0	0	0.70598	1	2117	2117		32.812	4.9302	1	55222	+		34335	16769	23819	23901	34756	34756					0.04604834225870036
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.8020629882812	2	607.80128	1213.58801	0.24806	0.00015077	0.27375	0.00016638	0.52181	0.00031716	607.8012758387138	33.5	0.51699	33.5	33.3	33.817	0					23	13	3	0	0	0	0.50287	1	12369	12369		45.022	17.14	1	294580			34336	6014	23820	23902	34757	34757					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.8018188476562	2	607.80128	1213.58801	0.018977	1.1534E-05	0.17594	0.00010694	0.19492	0.00011847	607.8015453091734	33.458	0.41611	33.458	33.3	33.716	0					16	8	3	0	0	0	0.48965	1	12710	12710		46.457	2.34	1	252070			34337	6014	23820	23902	34758	34758					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	607.8015747070312	2	607.80128	1213.58801	1.6485	0.0010019	-1.1138	-0.00067694	0.53471	0.000325	607.8005298519028	33.448	0.46772	33.448	33.232	33.7	0					29	9	4	0	0	0	0.10583	1	12703	12703		94.409	43.216	1	882420			34338	6014	23820	23902	34759	34759					-0.010243537794849544
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.8064575195312	2	583.303655	1164.59276	1.3659	0.00079676	0.022205	1.2952E-05	1.3881	0.00080971	583.3040269035139	37.877	0.24261	37.877	37.776	38.018	0					18	8	3	0	0	0	0.30257	1	14833	14833		35.152	16.049	1	219990			34339	7354;23071	23821	23903	34760	34760					0.017045303632812647
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2142333984375	2	480.214506	958.414459	0.044405	2.1324E-05	-0.59122	-0.00028391	-0.54682	-0.00026259	480.2141839551119	25.867	0.35165	25.867	25.734	26.086	0					15	8	2	0	0	0	0.16002	1	7797	7797		66.429	5.4573	1	320880			34340	6142	23822	23904	34761	34761					-0.06641139555756581
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2142333984375	2	480.214506	958.414459	-0.18531	-8.8989E-05	-0.36581	-0.00017567	-0.55112	-0.00026466	480.21430718335847	26.124	0.77475	26.124	26.031	26.805	0					34	18	4	0	0	0	0.0406	1	8976	8976		98.629	29.843	1	1780700			34341	6142	23822	23904	34762	34762					-0.06641139555756581
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.21405029296875	2	480.214506	958.414459	-1.3879	-0.00066648	1.2916	0.00062026	-0.096253	-4.6222E-05	480.21487552183027	25.892	0.30254	25.892	25.76	26.063	0					12	6	3	0	0	0	0.28897	1	8085	8085		51.193	12.387	1	232580			34342	6142	23822	23904	34763	34763					-0.06641139555756581
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;IFIH1|p.E827Dfs*5|1|0.04|ENSG00000115267|chr2:162272361-162272362|-/ATAAGGTATTG|frameshift_variant	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.79052734375	2	532.790381	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.789	1	36.789	36.289	37.289	0								0	0	0	0.010168	1	13901	13901		109.48	34.435	1				34343	2894	23823	23905	34764	34764					0.036968414719467546
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;IFIH1|p.E827Dfs*5|1|0.04|ENSG00000115267|chr2:162272361-162272362|-/ATAAGGTATTG|frameshift_variant	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7915649414062	2	532.790381	1063.56621	-0.36008	-0.00019185	1.2395	0.00066039	0.87941	0.00046854	532.7915521615365	36.612	0.26584	36.612	36.449	36.715	0					29	14	3	0	0	0	0.24334	1	12389	12389		56.434	5.2411	1	144750			34344	2894	23823	23905	34765	34765					0.036968414719467546
RYGRKIAN	8	Unmodified	_RYGRKIAN_					0	0	0			REV__ENST00000520579.5_1_5:149495328-149514444:-|nuORF	REV__ENST00000520579.5_1_5:149495328-149514444:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.1904296875	3	326.526159	976.556647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.38	1	29.38	28.88	29.88	0								0	0	0	1.7419	1	9264	9264		10.866	1.6826	1		+		34345	14055	23824	23906	34766	34766					0.06743117977066504
RYGSPINTF	9	Unmodified	_RYGSPINTF_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7696533203125	2	527.769448	1053.52434	0.10604	5.5963E-05	-0.59119	-0.00031201	-0.48515	-0.00025605	527.7691489872198	35.458	0.19739	35.458	35.372	35.569	0					13	5	3	0	0	0	0.25761	1	13302	13302		54.722	7.065	1	296460			34346	7237	23825	23907	34767	34767					-0.0002771421659417683
RYHMLLSF	8	Unmodified	_RYHMLLSF_					0	0	0		ENST00000307340.7_1_1:215963551-215972328:-|nuORF	ENST00000307340.7_1_1:215963551-215972328:-|nuORF	ENST00000307340.7_1_1:215963551-215972328:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7801513671875	2	533.778762	1065.54297	0.14633	7.8108E-05	2.1831	0.0011653	2.3295	0.0012434	533.7801230554226	37.15	0.23209	37.15	37.059	37.292	0					10	6	2	0	0	0	0.52345	1	14063	14063		57.811	4.4598	1	155840			34347	8529	23826	23908	34768	34768					0.012821241536357775
RYHQEHRQ	8	Unmodified	_RYHQEHRQ_					0	0	0			REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.2857055664062	2	577.28412	1152.55369	0.86677	0.00050037	0.23417	0.00013518	1.1009	0.00063556	577.2848894564836	19.995	0.10553	19.995	19.928	20.034	0					10	3	4	0	0	0	0.57171	1	5279	5279		51.335	16.183	1	203490	+		34348	18643	23827	23909	34769	34769					-0.016487571477455276
RYHSFSSKQD	10	Unmodified	_RYHSFSSKQD_					0	0	0		ENST00000430801.5_1_7:77290551-77325505:-|nuORF	ENST00000430801.5_1_7:77290551-77325505:-|nuORF	ENST00000430801.5_1_7:77290551-77325505:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	627.798095703125	2	627.796726	1253.5789	0.18989	0.00011921	1.5558	0.00097673	1.7457	0.0010959	628.2992810345656	14.774	0.071302	14.774	14.732	14.803	0					5	3	2	0	0	0	0.51765	1	3103	3103		46.457	5.0302	1	87957			34349	9495	23828	23910	34770	34770					-0.03774747135821599
RYHSFSSKQD	10	Unmodified	_RYHSFSSKQD_					0	0	0		ENST00000430801.5_1_7:77290551-77325505:-|nuORF	ENST00000430801.5_1_7:77290551-77325505:-|nuORF	ENST00000430801.5_1_7:77290551-77325505:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	627.7987670898438	2	627.796726	1253.5789	1.269	0.00079665	1.8694	0.0011736	3.1384	0.0019703	627.7977750517546	15.019	0.10092	15.019	14.967	15.068	0					8	2	4	0	0	0	0.33224	1	3795	3795		59.931	8.7381	1	774000			34350	9495	23828	23910	34771	34771					-0.03774747135821599
RYIAQVKHL	9	Unmodified	_RYIAQVKHL_					0	0	0		ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.56097412109375	3	376.560981	1126.66111	0.67518	0.00025425	-0.76789	-0.00028916	-0.092708	-3.491E-05	376.5606810871888	22.111	0.26355	22.111	22.005	22.269	0					13	5	4	0	0	0	0.11898	1	7448	7448		75.043	27.084	1	1152000			34351	8358	23829	23911	34772	34772					0.10284819733806216
RYIAQVKHL	9	Unmodified	_RYIAQVKHL_					0	0	0		ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5608825683594	3	376.560981	1126.66111	0.70849	0.00026679	-0.84502	-0.0003182	-0.13653	-5.141E-05	376.5606365749623	22.13	0.21836	22.13	22.02	22.239	0					12	4	3	0	0	0	0.22837	1	7324	7324		58.23	16.803	1	1444400			34352	8358	23829	23911	34773	34773					0.10284819733806216
RYIGALPKGQ	10	Unmodified	_RYIGALPKGQ_					0	0	0			REV__ENST00000437519.5_1_12:123868737-123892247:+|nuORF	REV__ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.8241577148438	2	551.822015	1101.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.861	1	11.861	11.361	12.361	0								0	0	0	0.4201	1	2384	2384		21.96	0	1		+		34353	16959	23830	23912	34774	34774					0.08272826979850834
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2767333984375	2	505.276909	1008.53927	-0.071728	-3.6243E-05	0.21084	0.00010653	0.13911	7.0289E-05	505.2770006735655	36.711	0.48929	36.711	36.559	37.048	0					61	26	3	0	0	0	0.42902	1	12006	12006		39.253	8.7492	1	533040			34354	1300	23831	23913	34775	34775					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.27679443359375	2	505.276909	1008.53927	-0.04844	-2.4476E-05	1.2269	0.00061991	1.1784	0.00059544	505.2777506312137	36.957	1.1064	36.957	36.776	37.882	0					89	32	4	0	0	0	0.17854	1	13939	13939		64.207	12.872	1	4410500			34355	1300	23831	23913	34776	34776					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.27691650390625	2	505.276909	1008.53927	-0.7055	-0.00035648	0.52647	0.00026601	-0.17904	-9.0464E-05	505.2771449247476	36.741	0.45596	36.741	36.603	37.059	0					54	24	3	0	0	0	0.42902	1	12443	12443		39.253	10.103	1	577650			34356	1300	23831	23913	34777	34777					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2768859863281	2	505.276909	1008.53927	-0.41222	-0.00020829	0.76201	0.00038503	0.34979	0.00017674	505.27737461708807	36.943	1.0494	36.943	36.76	37.81	0					85	32	5	0	0	0	0.33044	1	14387	14387		47.657	1.7054	1	3800300			34357	1300	23831	23913	34778	34778					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENST00000498837.1_1_3:127786720-127788502:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2767639160156	2	505.276909	1008.53927	2.9345	0.0014827	-1.9378	-0.00097914	0.99666	0.00050359	505.2762060647591	36.854	1.2338	36.854	36.698	37.932	0					57	25	4	0	0	0	0.19605	1	14344	14344		62.107	10.772	1	15304000			34358	1300	23831	23913	34779	34779					0.035337776513983954
RYITKGNLF	9	Unmodified	_RYITKGNLF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.317626953125	2	556.316566	1110.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.23	1	32.23	31.73	32.73	0								0	0	0	0.27939	1	12231	12231		39.253	7.723	1				34359	8103	23832	23914	34780	34780					0.0676942460556802
RYKDSTGF	8	Unmodified	_RYKDSTGF_					0	0	0			REV__ENSG00000129667|ENST00000675367|RHBDF2	REV__ENSG00000129667|ENST00000675367|RHBDF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.24078369140625	2	487.240524	972.466495	-2.9114	-0.0014185	2.3695	0.0011545	-0.54184	-0.000264	487.24161614851494	27.16	0.29606	27.16	27.118	27.414	0					9	7	2	0	0	0	0.5676	1	8898	8898		53.351	3.9099	1	51773	+		34360	14556	23833	23915	34781	34781					-0.020839761420006653
RYLDKQELD	9	Unmodified	_RYLDKQELD_					0	0	0			REV__ENSG00000181007|ENST00000392161|ZFP82	REV__ENSG00000181007|ENST00000392161|ZFP82	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.3046875	2	590.303852	1178.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.683	1	36.683	36.183	37.183	0								0	0	0	0.28666	1	14304	14304		37.812	0.30334	1		+		34361	16833	23834	23916	34782	34782					0.010999052924717034
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;CON__P01030	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	619.8121337890625	2	619.811845	1237.60914	-0.25308	-0.00015686	0.74821	0.00046375	0.49513	0.00030689	619.8122828322597	29.94	0.36381	29.94	29.853	30.217	0					17	9	3	0	0	0	0.022525	1	10754	10754		117.81	61.09	1	277900			34362	7863	23835	23917	34783	34783					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;CON__P01030	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	619.8126220703125	2	619.811845	1237.60914	2.0288	0.0012575	-1.9292	-0.0011957	0.099626	6.175E-05	619.8106769005213	30	0.38104	30	29.868	30.249	0					16	8	3	0	0	0	0.12278	1	11148	11148		74.165	9.9577	1	122140			34363	7863	23835	23917	34784	34784					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;CON__P01030	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.811767578125	2	619.811845	1237.60914	-0.030265	-1.8759E-05	0.45201	0.00028016	0.42174	0.0002614	619.8120759660212	29.905	0.46316	29.905	29.798	30.261	0					21	9	3	0	0	0	0.032181	1	10997	10997		106.88	31.837	1	383670			34364	7863	23835	23917	34785	34785					-0.00016388470635320118
RYLEGTSCI	9	Carbamidomethyl (C)	_RYLEGTSC(Carbamidomethyl (C))I_	RYLEGTSC(1)I		RYLEGTSC(83)I		0	1	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.766357421875	2	549.766049	1097.51754	1.2722	0.0006994	-0.2527	-0.00013893	1.0195	0.00056048	549.7659962351725	31.273	0.28512	31.273	31.141	31.426	0					25	11	3	0	0	0	0.085655	1	10024	10024		82.75	29.814	1	452580			34365	8044	23836	23918	34786	34786	349				-0.02731395159457861
RYLEGTSCI	9	Carbamidomethyl (C)	_RYLEGTSC(Carbamidomethyl (C))I_	RYLEGTSC(1)I		RYLEGTSC(130)I		0	1	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.766357421875	2	549.766049	1097.51754	0.53221	0.00029259	0.17671	9.7152E-05	0.70893	0.00038975	549.7662357639281	31.492	0.3337	31.492	31.402	31.735	0					20	8	4	0	0	0	0.016683	1	11471	11471		127.46	55.584	1	3009800			34366	8044	23836	23918	34787	34787	349				-0.02731395159457861
RYLEGTSCI	9	Carbamidomethyl (C)	_RYLEGTSC(Carbamidomethyl (C))I_	RYLEGTSC(1)I		RYLEGTSC(56)I		0	1	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7662963867188	2	549.766049	1097.51754	-0.32367	-0.00017794	0.75129	0.00041303	0.42762	0.00023509	549.7664720551434	31.312	0.21226	31.312	31.214	31.426	0					13	8	3	0	0	0	0.24334	1	10353	10353		56.434	19.987	1	109190			34367	8044	23836	23918	34788	34788	349				-0.02731395159457861
RYLEGTSCI	9	Carbamidomethyl (C)	_RYLEGTSC(Carbamidomethyl (C))I_	RYLEGTSC(1)I		RYLEGTSC(83)I		0	1	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7662353515625	2	549.766049	1097.51754	0.21566	0.00011856	0.1071	5.8879E-05	0.32276	0.00017744	549.7661937215829	31.508	0.38641	31.508	31.364	31.75	0					20	8	4	0	0	0	0.085655	1	11894	11894		82.75	20.643	1	1025700			34368	8044	23836	23918	34789	34789	349				-0.02731395159457861
RYLEGTSCI	9	Carbamidomethyl (C)	_RYLEGTSC(Carbamidomethyl (C))I_	RYLEGTSC(1)I		RYLEGTSC(75)I		0	1	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.7664184570312	2	549.766049	1097.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.271	1	31.271	30.771	31.771	0								0	0	0	0.088368	1	10746	10746		75.043	21.692	1				34369	8044	23836	23918	34790	34790	349				-0.02731395159457861
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.255126953125	2	521.255317	1040.49608	0.75504	0.00039357	-0.64813	-0.00033784	0.10691	5.5728E-05	521.2551937659588	33.894	0.62986	33.894	33.772	34.402	0					57	27	3	0	0	0	0.44593	1	11177	11177		37.812	3.639	1	540030			34370	8044	23836	23919	34791	34791					-0.022547801881728446
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2551879882812	2	521.255317	1040.49608	0.075969	3.9599E-05	-0.24859	-0.00012958	-0.17262	-8.998E-05	521.2553657761139	34.14	1.3569	34.14	33.987	35.344	0					80	35	4	0	0	0	0.16806	1	12662	12662		65.465	6.6834	1	3134400			34371	8044	23836	23919	34792	34792					-0.022547801881728446
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.255615234375	2	521.255317	1040.49608	-0.15396	-8.0253E-05	0.28263	0.00014732	0.12867	6.7072E-05	521.2555751639611	34.129	0.97027	34.129	34.028	34.998	0					58	25	4	0	0	0	0.078509	1	13117	13117		85.161	21.855	1	1338300			34372	8044	23836	23919	34793	34793					-0.022547801881728446
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2554321289062	2	521.255317	1040.49608	-1.3285	-0.0006925	1.4374	0.00074926	0.10888	5.6753E-05	521.2562577042102	33.911	0.73212	33.911	33.799	34.531	0					41	22	3	0	0	0	0.078509	1	11950	11950		85.161	26.379	1	404880			34373	8044	23836	23919	34794	34794					-0.022547801881728446
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant;ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.85107421875	2	581.850773	1161.68699	1.3378	0.00077843	-0.61294	-0.00035664	0.7249	0.00042179	581.8505181294274	24.093	0.41472	24.093	24.006	24.421	0					14	9	2	0	0	0	0.15558	1	8082	8082		51.193	20.875	1	253880			34374	4176	23837	23920	34795	34795					0.11261669185432766
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant;ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.23614501953125	3	388.236274	1161.68699	0.1816	7.0503E-05	-0.51739	-0.00020087	-0.33579	-0.00013037	388.236064100175	24.053	1.2578	24.053	23.947	25.205	0					30	25	2	0	0	0	0.021015	1	8380	8380		120.31	55.028	1	993880			34375	4176	23837	23920	34796	34796					0.11261669185432766
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant;ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.8507080078125	2	581.850773	1161.68699	0.12611	7.3377E-05	-0.03285	-1.9114E-05	0.09326	5.4263E-05	581.8505882398626	24.037	0.26522	24.037	23.931	24.196	0					12	5	3	0	0	0	0.11635	1	8246	8246		68.846	22.874	1	359370			34376	4176	23837	23920	34797	34797					0.11261669185432766
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant;ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.2362060546875	3	388.236274	1161.68699	0.52369	0.00020332	-0.24521	-9.52E-05	0.27848	0.00010812	388.2362018983978	24.02	0.85675	24.02	23.914	24.771	0					27	17	2	0	0	0	0.037712	1	8239	8239		101.46	47.863	1	1066700			34377	4176	23837	23920	34798	34798					0.11261669185432766
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant;ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.8513793945312	2	581.850773	1161.68699	1.6823	0.00097887	-0.74708	-0.00043469	0.93526	0.00054418	581.8504062174458	24.022	0.31519	24.022	23.914	24.229	0					15	6	4	0	0	0	0.18505	1	8240	8240		56.434	0	1	557540			34378	4176	23837	23920	34799	34799					0.11261669185432766
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant;ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.236328125	3	388.236274	1161.68699	3.2044	0.0012441	-2.6922	-0.0010452	0.51214	0.00019883	388.2350540238526	24.004	0.76412	24.004	23.897	24.661	0					32	15	3	0	0	0	0.035106	1	8230	8230		104.01	31.134	1	1265900			34379	4176	23837	23920	34800	34800					0.11261669185432766
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.8152465820312	2	589.815541	1177.61653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.582	1	31.582	31.082	32.082	0								0	0	0	0.3245	1	10161	10161		30.318	9.3708	1				34380	6103	23838	23921	34801	34801					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.8163452148438	2	589.815541	1177.61653	0.9958	0.00058734	-0.86048	-0.00050752	0.13532	7.9812E-05	589.8150838966798	31.847	0.70185	31.847	31.613	32.315	0					49	17	4	0	0	0	0.18416	2	11578	11578;11747		63.534	19.157	1	502720			34381	6103	23838	23921	34802;34803	34802					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.5462341308594	3	393.54612	1177.61653	-0.18725	-7.3691E-05	0.40333	0.00015873	0.21608	8.5036E-05	393.54625880183033	31.819	0.77969	31.819	31.562	32.342	0					33	19	2	0	0	0	0.42902	1	11614	11614		46.457	10.139	1	491260			34382	6103	23838	23921	34804	34804					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.8157958984375	2	589.815541	1177.61653	0.19372	0.00011426	0.46716	0.00027554	0.66087	0.00038979	589.8159430864766	31.874	0.49829	31.874	31.64	32.139	0					22	12	2	0	0	0	0.35021	1	11646	11646		45.972	5.1941	1	179250			34383	6103	23838	23921	34805	34805					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.8157958984375	2	589.815541	1177.61653	-1.7679	-0.0010427	1.4355	0.00084669	-0.33236	-0.00019603	589.8166062321484	31.647	0.46598	31.647	31.42	31.886	0					26	13	3	0	0	0	0.27123	1	10887	10887		53.089	13.836	1	95125			34384	6103	23838	23921	34806	34806					0.03482627805442462
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(91)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.8133544921875	2	597.812999	1193.61144	0.66129	0.00039533	-0.54215	-0.00032411	0.11913	7.122E-05	597.812869493121	26.851	0.71169	26.851	26.76	27.472	0					45	17	4	0	0	0	0.061298	1	9322	9322		91.265	29.158	1	1206400			34385	6103	23838	23922	34807	34807		252			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(73)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	398.8777160644531	3	398.877758	1193.61144	-0.33327	-0.00013293	0.032859	1.3107E-05	-0.30041	-0.00011983	398.87780532737656	26.873	0.50578	26.873	26.745	27.251	0					28	12	4	0	0	0	0.12834	1	9315	9315		72.879	19.943	1	776080			34386	6103	23838	23922	34808	34808		252			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(53)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.8132934570312	2	597.812999	1193.61144	1.1839	0.00070776	-1.317	-0.00078732	-0.1331	-7.9566E-05	597.8125492778835	26.873	0.90817	26.873	26.661	27.569	0					48	18	4	0	0	0	0.27123	1	9702	9702		53.089	13.836	1	1646500			34387	6103	23838	23922	34809	34809		252			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(73)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.8775939941406	3	398.877758	1193.61144	0.42128	0.00016804	-0.7098	-0.00028312	-0.28851	-0.00011508	398.8774194145372	26.903	0.30892	26.903	26.795	27.104	0					17	6	3	0	0	0	0.12834	1	9673	9673		72.879	17.795	1	529240			34388	6103	23838	23922	34810	34810		252			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(85)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.8135986328125	2	597.812999	1193.61144	0.06008	3.5917E-05	0.5868	0.00035079	0.64688	0.00038671	597.8134017872275	26.836	0.46569	26.836	26.705	27.17	0					23	9	4	0	0	0	0.078509	1	9533	9533		85.161	28.44	1	553820			34389	6103	23838	23922	34811	34811		252			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(96)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.8131713867188	2	597.812999	1193.61144	1.8947	0.0011327	-1.9728	-0.0011794	-0.078056	-4.6663E-05	597.8121670241624	26.844	1.0249	26.844	26.637	27.662	0					59	20	4	0	0	0	0.047855	1	9522	9522		96.034	18.716	1	3726200			34390	6103	23838	23922	34812	34812		252			0.022383239428108936
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.8098754882812	2	532.808574	1063.60259	1.9536	0.0010409	-1.1899	-0.00063401	0.76367	0.00040689	532.8078929820456	27.358	0.30686	27.358	27.265	27.572	0					18	7	3	0	0	0	0.10506	1	9535	9535		78.264	1.4896	1	532410			34391	7808	23839	23923	34813	34813					0.07333718368658992
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	ENSG00000204642|ENST00000259951|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	612.3264770507812	2	611.824952	1221.63535	-0.63393	-0.00038785	0.41001	0.00025086	-0.22392	-0.000137	612.3269259696605	24.94	0.099699	24.94	24.904	25.004	0					5	3	2	0	0	0	0.4287	1	7700	7700		53.089	3.0554	1	101620			34392	7718;7707;7768	23840	23924	34814	34814					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	ENSG00000204642|ENST00000259951|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.3264770507812	2	611.824952	1221.63535	0.41067	0.00025126	-0.10478	-6.4105E-05	0.30589	0.00018715	612.3264179045171	25.004	0.1488	25.004	24.906	25.055	0					5	3	2	0	0	0	0.65895	1	7898	7898		27.047	1.4733	1	67296			34393	7718;7707;7768	23840	23924	34815	34815					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	ENSG00000204642|ENST00000259951|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.8250122070312	2	611.824952	1221.63535	1.3547	0.00082886	-1.1836	-0.00072417	0.17112	0.00010469	611.8242205681396	25.102	0.21719	25.102	24.996	25.213	0					10	4	3	0	0	0	0.50287	1	8762	8762		45.022	4.244	1	464500			34394	7718;7707;7768	23840	23924	34816	34816					0.03339880700855247
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.55615234375	3	400.555895	1198.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.803	1	32.803	32.303	33.303	0								0	0	0	0.34845	1	10628	10628		26.063	1.5442	1				34395	6103	23841	23925	34817	34817					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.5556335449219	3	400.555895	1198.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.047	1	33.047	32.547	33.547	0								0	0	0	0.21054	1	12188	12188		47.96	0	1				34396	6103	23841	23925	34818	34818					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.3307495117188	2	600.330205	1198.64586	0.98364	0.00059051	-0.50379	-0.00030244	0.47986	0.00028807	600.3299190971846	33.012	0.48492	33.012	32.917	33.402	0					23	11	3	0	0	0	0.061298	1	12588	12588		91.265	25.8	1	1189600			34397	6103	23841	23925	34819	34819					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.55596923828125	3	400.555895	1198.64586	0.82414	0.00033011	-1.3414	-0.00053732	-0.5173	-0.00020721	400.5555430515434	33.012	0.44153	33.012	32.917	33.358	0					16	10	3	0	0	0	0.17854	1	12611	12611		61.691	6.9689	1	545140			34398	6103	23841	23925	34820	34820					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.5557861328125	3	400.555895	1198.64586	0.46147	0.00018485	-0.65865	-0.00026383	-0.19718	-7.898E-05	400.5556866992687	32.964	0.6918	32.964	32.858	33.549	0					23	14	2	0	0	0	0.12239	1	12489	12489		70.816	24.359	1	1943000			34399	6103	23841	23925	34821	34821					0.05447908145947622
RYLGTADS	8	Unmodified	_RYLGTADS_					0	0	0			REV__nc|ENSG00000168309|O95990-3|FAM107A	REV__nc|ENSG00000168309|O95990-3|FAM107A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.71868896484375	2	441.719424	881.424296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.724	1	21.724	21.224	22.224	0								0	0	0	1.7419	1	6349	6349		23.042	6.5693	1		+		34400	21111	23842	23926	34822	34822					-0.021159515503882176
RYLISTGST	9	Unmodified	_RYLISTGST_					0	0	0		nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2691650390625	2	499.269281	996.52401	0.1659	8.2831E-05	-0.70089	-0.00034993	-0.53498	-0.0002671	499.2681895834078	29.381	0.12924	29.381	29.297	29.426	0					5	3	2	0	0	0	0.46194	1	9890	9890		29.15	2.4566	1	37781			34401	4959	23843	23927	34823	34823					0.025608660635725755
RYLKLKQQ	8	Unmodified	_RYLKLKQQ_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8324584960938	2	538.832383	1075.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.092	1	14.092	13.592	14.592	0								0	0	0	1.7419	1	3358	3358		52.299	2.2746	1				34402	3728	23844	23928	34824	34824					0.1154141735948997
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.8089599609375	2	526.808574	1051.60259	1.3135	0.00069194	-0.11678	-6.1519E-05	1.1967	0.00063042	526.8085481380726	24.51	0.22946	24.51	24.435	24.664	0					8	6	2	0	0	0	0.14578	1	7242	7242		71.877	22.436	1	135740			34403	3624	23845	23929	34825	34825					0.07885718368652306
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.808837890625	2	526.808574	1051.60259	0.95136	0.00050118	-0.13297	-7.0049E-05	0.81839	0.00043114	526.8085084271662	24.77	0.21218	24.77	24.661	24.873	0					13	4	4	0	0	0	0.024312	1	8695	8695		109.48	53.045	1	777220			34404	3624	23845	23929	34826	34826					0.07885718368652306
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.808349609375	2	526.808574	1051.60259	0.6339	0.00033395	-0.52065	-0.00027428	0.11325	5.9661E-05	526.8082652177148	24.684	0.30352	24.684	24.58	24.884	0					15	6	4	0	0	0	0.0071744	1	8554	8554		145.16	65.443	1	1607300			34405	3624	23845	23929	34827	34827					0.07885718368652306
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3006591796875	2	520.300384	1038.58622	0.067816	3.5285E-05	0.52099	0.00027107	0.5888	0.00030635	520.3006418704745	46.659	0.28358	46.659	46.57	46.854	0					31	17	3	0	0	0	0.30841	1	17200	17200		42.396	13.247	1	133200			34406	7342	23846	23930	34828	34828					0.06846637202556849
RYMDAWNTV	9	Unmodified	_RYMDAWNTV_					0	0	0		ENSG00000099800|ENST00000215570|TIMM13	ENSG00000099800|ENST00000215570|TIMM13	ENSG00000099800|ENST00000215570|TIMM13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.2676391601562	2	578.266216	1154.51788	-0.062081	-3.5899E-05	2.1602	0.0012492	2.0981	0.0012133	578.2671343633634	40.045	0.19795	40.045	39.98	40.178	0					10	7	2	0	0	0	0.53064	1	15252	15252		29.17	0.020503	1	62018			34407	1940	23847	23931	34829	34829					-0.053199754396246135
RYMEVSGNL	9	Unmodified	_RYMEVSGNL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7607421875	2	534.760766	1067.50698	1.7838	0.00095393	-1.0824	-0.00057882	0.70146	0.00037511	534.7601475196844	33.059	0.39478	33.059	32.875	33.269	0					12	9	2	0	0	0	0.12834	1	12630	12630		72.879	8.672	1	674550			34408	6959	23848	23932	34830	34830					-0.02407377813869971
RYMEVSGNL	9	Unmodified	_RYMEVSGNL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.761474609375	2	534.760766	1067.50698	-1.3412	-0.00071722	2.4265	0.0012976	1.0853	0.00058038	534.7619128724458	32.859	0.24664	32.859	32.716	32.963	0					12	6	2	0	0	0	0.28897	1	11487	11487		51.193	5.2204	1	184560			34409	6959	23848	23932	34831	34831					-0.02407377813869971
RYPDNLKHL	9	Unmodified	_RYPDNLKHL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;CCDC59|p.N163Ifs*5|1|0.04|ENSG00000133773|chr12:82354571-82354572|-/CCTAAATATA|frameshift_variant;ENST00000406807.2_1_6:149812705-149813218:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.88055419921875	3	385.88049	1154.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.181	1	24.181	23.681	24.681	0								0	0	0	0.024296	1	8430	8430		98.582	41.95	1				34410	408	23849	23933	34832	34832					0.04851638974469097
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.7855224609375	2	581.78563	1161.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.501	1	31.501	31.001	32.001	0								0	0	0	0.26578	1	10128	10128		41.427	7.505	1				34411	4285	23850	23934	34833	34833					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	581.7860717773438	2	581.78563	1161.55671	-0.015231	-8.8612E-06	1.0971	0.00063826	1.0818	0.0006294	581.7863359752305	31.885	1.1809	31.885	31.402	32.583	0					72	29	4	0	0	0	0.28897	2	11718	11555;11718		51.193	10.052	1	429350			34412	4285	23850	23934	34834;34835	34835					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.785888671875	2	581.78563	1161.55671	-0.16253	-9.456E-05	0.96719	0.0005627	0.80465	0.00046814	581.7863683194394	31.783	0.7967	31.783	31.324	32.121	0					61	31	3	0	0	0	0.58342	1	10570	10570		23.523	0	1	198640			34413	4285	23850	23934	34836	34836					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.7857666015625	2	581.78563	1161.55671	1.4444	0.00084035	-0.68475	-0.00039838	0.75968	0.00044197	581.7852637758226	31.996	1.5037	31.996	31.471	32.974	0					73	34	3	0	0	0	0.21419	2	12153	11976;12153		59.931	20.678	1	976150			34414	4285	23850	23934	34837;34838	34838					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.786376953125	2	581.78563	1161.55671	0.56742	0.00033011	-0.3238	-0.00018838	0.24361	0.00014173	581.7854556348022	31.711	0.66412	31.711	31.303	31.967	0					28	18	2	0	0	0	0.55048	1	10890	10890		27.047	7.0505	1	127850			34415	4285	23850	23934	34839	34839					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.7857666015625	2	581.78563	1161.55671	1.6846	0.00098006	-1.2359	-0.000719	0.44873	0.00026106	581.7849543647673	31.861	1.6168	31.861	31.258	32.875	0					70	32	3	0	0	0	0.12834	1	11896	11896		72.879	26.907	1	1121300			34416	4285	23850	23934	34840	34840					-0.017609268135856837
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2795104980469	2	504.279649	1006.54475	-0.057207	-2.8848E-05	-0.36713	-0.00018513	-0.42433	-0.00021398	504.27945677581044	37.547	0.99082	37.547	36.892	37.882	0					54	29	2	0	0	0	0.032052	2	14115	14115;14269		107.01	6.6089	1	2403900			34417	5089	23851	23935	34841;34842	34841					0.04173456443231771
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;EIF3L|p.A337T|1|0.18|ENSG00000100129|chr22:37875943-37875943|G/A|missense_variant	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.3172607421875	2	584.317097	1166.61964	1.2303	0.00071886	-1.0528	-0.00061515	0.17749	0.00010371	584.3165149832225	35.718	0.27401	35.718	35.64	35.914	0					17	7	3	0	0	0	0.56843	1	13408	13408		18.262	10.027	1	251450			34418	1975	23852	23936	34843	34843					0.04299638974453046
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;EIF3L|p.A337T|1|0.18|ENSG00000100129|chr22:37875943-37875943|G/A|missense_variant	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	584.31689453125	2	584.317097	1166.61964	1.3853	0.00080947	-1.6174	-0.0009451	-0.23212	-0.00013563	584.3163849507404	35.748	0.36451	35.748	35.532	35.896	0					18	10	3	0	0	0	0.12278	1	13889	13889		58.23	23.078	1	281710			34419	1975	23852	23936	34844	34844					0.04299638974453046
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;EIF3L|p.A337T|1|0.18|ENSG00000100129|chr22:37875943-37875943|G/A|missense_variant	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.3175048828125	2	584.317097	1166.61964	0.11587	6.7703E-05	0.37427	0.00021869	0.49014	0.0002864	584.3173289807388	35.645	0.41435	35.645	35.484	35.898	0					17	8	3	0	0	0	0.15558	1	13766	13766		69.628	35.455	1	309780			34420	1975	23852	23936	34845	34845					0.04299638974453046
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;EIF3L|p.A337T|1|0.18|ENSG00000100129|chr22:37875943-37875943|G/A|missense_variant	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.3178100585938	2	584.317097	1166.61964	1.5682	0.00091633	-1.3213	-0.00077208	0.24688	0.00014425	584.3164460579578	35.628	0.66579	35.628	35.518	36.183	0					24	13	3	0	0	0	0.24169	1	13780	13780		49.536	1.6204	1	686960			34421	1975	23852	23936	34846	34846					0.04299638974453046
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.8092651367188	2	572.809105	1143.60366	0.929	0.00053214	-0.6694	-0.00038344	0.2596	0.0001487	572.8087495514079	36.616	0.31192	36.616	36.539	36.851	0					20	9	3	0	0	0	0.061298	1	14262	14262		85.161	14.345	1	825500			34422	277	23853	23937	34847	34847					0.03759932737557392
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3167724609375	2	569.316763	1136.61897	1.9733	0.0011234	-2.5063	-0.0014269	-0.53295	-0.00030342	569.3152516000628	24.458	0.41881	24.458	24.343	24.762	0					21	8	4	0	0	0	0.022698	1	8572	8572		124.08	74.544	1	2005100			34423	6067	23854	23938	34848	34848					0.056127995347424076
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.3163452148438	2	569.316763	1136.61897	-1.3198	-0.00075137	1.1764	0.00066977	-0.14333	-8.1601E-05	569.3173453341203	24.283	0.21977	24.283	24.206	24.426	0					9	5	2	0	0	0	0.10506	1	7545	7545		82.241	12.613	1	226370			34424	6067	23854	23938	34849	34849					0.056127995347424076
RYQTQPVTL	9	Unmodified	_RYQTQPVTL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3042602539062	2	553.303655	1104.59276	3.6317	0.0020094	-0.35302	-0.00019533	3.2787	0.0018141	553.3028401152634	30.727	0.70186	30.727	30.309	31.011	0					24	10	5	0	0	0	0.27123	1	11411	11411		37.812	0	1	1792700			34425	7449	23855	23939	34850	34850					0.044645303632933064
RYSQDVTF	8	Unmodified	_RYSQDVTF_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.24591064453125	2	508.245806	1014.47706	1.1369	0.00057784	-0.88843	-0.00045154	0.24851	0.0001263	508.24526348295643	28.373	0.35354	28.373	28.275	28.628	0					11	7	2	0	0	0	0.5676	1	10399	10399		53.351	5.4358	1	1269400	+		34426	13217	23856	23940	34851	34851					-0.029599934875705003
RYSRVVKAPI	10	Unmodified	_RYSRVVKAPI_					0	0	0			REV__CCL21|p.K39R|1|0.32|ENSG00000137077|chr9:34709849-34709849|T/C|missense_variant	REV__CCL21|p.K39R|1|0.32|ENSG00000137077|chr9:34709849-34709849|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.8641357421875	2	594.864215	1187.71388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.022	1	33.022	32.522	33.522	0								0	0	0	0.40862	1	12602	12602		27.882	1.1893	1		+		34427	12372	23857	23941	34852	34852					0.1275277779661792
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2345275878906	2	510.234384	1018.45422	-0.11608	-5.9227E-05	-0.01265	-6.4547E-06	-0.12873	-6.5682E-05	510.2345406237742	32.445	0.66787	32.445	32.339	33.007	0					72	27	4	0	0	0	0.078509	2	10474	10474;10632		85.161	24.189	1	2263100			34428	5454	23858	23942	34853;34854	34853					-0.054273358766863566
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2345886230469	2	510.234384	1018.45422	-0.010021	-5.113E-06	0.04716	2.4062E-05	0.037139	1.8949E-05	510.2345040672988	32.705	1.2056	32.705	32.492	33.698	0					93	31	5	0	0	0	0.056004	2	12018	12018;12195		93.143	16.369	1	15515000			34429	5454	23858	23942	34855;34856	34855					-0.054273358766863566
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2345886230469	2	510.234384	1018.45422	-0.44331	-0.00022619	0.41167	0.00021005	-0.03164	-1.6144E-05	510.23480809265595	32.497	0.49177	32.497	32.365	32.857	0					45	19	4	0	0	0	0.21263	1	10819	10819		60.118	8.7828	1	1127600			34430	5454	23858	23942	34857	34857					-0.054273358766863566
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2344055175781	2	510.234384	1018.45422	-0.30967	-0.00015801	-0.0074577	-3.8052E-06	-0.31713	-0.00016181	510.2346072867019	32.506	0.35906	32.506	32.379	32.738	0					38	14	4	0	0	0	0.30841	1	10825	10825		49.536	7.1399	1	468900			34431	5454	23858	23942	34858	34858					-0.054273358766863566
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2344970703125	2	510.234384	1018.45422	-0.42134	-0.00021498	0.13113	6.6908E-05	-0.2902	-0.00014807	510.23462314683456	32.708	0.67696	32.708	32.582	33.259	0					42	16	4	0	0	0	0.19605	1	12426	12426		62.107	8.756	1	2912600			34432	5454	23858	23942	34859	34859					-0.054273358766863566
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.234619140625	2	510.234384	1018.45422	-1.8053	-0.00092113	1.6877	0.00086114	-0.11756	-5.9983E-05	510.2354277029654	32.498	0.68787	32.498	32.378	33.066	0					54	20	5	0	0	0	0.098791	1	11277	11277		79.713	31.797	1	2343700			34433	5454	23858	23942	34860	34860					-0.054273358766863566
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(80)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2318725585938	2	518.231842	1034.44913	-1.4116	-0.00073153	1.8213	0.00094385	0.40969	0.00021232	518.2330072447661	25.536	0.45103	25.536	25.327	25.778	0					27	11	3	0	0	0	0.098791	1	8088	8088		79.713	20.931	1	367400			34434	5454	23858	23943	34861	34861		219			-0.06671639739306556
RYSTQIHSF	9	Unmodified	_RYSTQIHSF_					0	0	0		ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7861938476562	2	569.78563	1137.55671	0.30368	0.00017303	-0.40248	-0.00022933	-0.098796	-5.6293E-05	569.7860214900365	26.51	0.82079	26.51	26.4	27.221	0					39	16	3	0	0	0	0.17062	1	9366	9366		65.157	1.6234	1	796340			34435	6807	23859	23944	34862	34862					-0.0065692681357631955
RYSVFFQSL	9	Unmodified	_RYSVFFQSL_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.7991943359375	2	573.800749	1145.58694	3.3518	0.0019233	-2.7769	-0.0015934	0.57492	0.00032989	573.7991604350871	49.481	0.20605	49.481	49.364	49.57	0					17	9	3	0	0	0	0.21419	1	19550	19550		59.931	5.1545	1	173970			34436	5586	23860	23945	34863	34863					0.019974318516233325
RYTCKARLA	9	Unmodified	_RYTCKARLA_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2984008789062	2	541.300393	1080.58623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.168	1	21.168	20.668	21.668	0								0	0	0	0.2882	1	6033	6033		37.812	3.639	1				34437	2768	23861	23946	34864	34864					0.04916313930925753
RYTEVEQATR	10	Unmodified	_RYTEVEQATR_					0	0	0			REV__ENST00000581230.5_1_17:62498125-62502378:-|nuORF	REV__ENST00000581230.5_1_17:62498125-62502378:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.8182373046875	2	626.817658	1251.62076	1.1249	0.00070512	-0.61187	-0.00038353	0.51306	0.00032159	626.8173372450648	31.693	0.25913	31.693	31.601	31.86	0					16	6	4	0	0	0	0.2978	1	11571	11571		67.494	3.9598	1	328360	+		34438	12688	23862	23947	34865	34865					0.005018085526899085
RYTIQLTTL	9	Unmodified	_RYTIQLTTL_					0	0	0		SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant;ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-5|SNED1;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1	SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant	SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8214721679688	2	554.821681	1107.62881	-0.048182	-2.6732E-05	0.63622	0.00035299	0.58804	0.00032626	554.821920222006	40.218	0.23341	40.218	40.157	40.391	0					18	9	3	0	0	0	0.44593	1	15839	15839		37.812	0	1	350000			34439	22429	23863	23948	34866	34866					0.0792998754011478
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.3267822265625	2	574.824755	1147.63496	1.0276	0.00059072	-0.58549	-0.00033655	0.44216	0.00025417	575.3256808696094	33.046	0.14966	33.046	32.96	33.109	0					13	7	2	0	0	0	0.36892	1	10718	10718		44.377	1.981	1	99597			34440	3656	23864	23949	34867	34867					0.0670450577167685
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.8248901367188	2	574.824755	1147.63496	-0.1047	-6.0182E-05	-0.58783	-0.0003379	-0.69253	-0.00039808	574.8240001384888	33.282	0.3708	33.282	33.21	33.58	0					18	9	4	0	0	0	0.082776	1	12303	12303		83.647	6.3294	1	512900			34441	3656	23864	23949	34868	34868					0.0670450577167685
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.8253173828125	2	574.824755	1147.63496	-0.17351	-9.9737E-05	1.4943	0.00085894	1.3208	0.00075921	574.8256995794262	33.1	0.1169	33.1	33.045	33.162	0					7	5	2	0	0	0	0.3269	1	11088	11088		47.96	12.807	1	45615			34442	3656	23864	23949	34869	34869					0.0670450577167685
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.8248901367188	2	574.824755	1147.63496	-0.2106	-0.00012106	-0.0060028	-3.4506E-06	-0.21661	-0.00012451	574.8245870688435	33.292	0.35613	33.292	33.165	33.521	0					14	8	3	0	0	0	0.10506	1	12721	12721		78.264	10.77	1	329520			34443	3656	23864	23949	34870	34870					0.0670450577167685
RYTLPQKLMQ	10	Oxidation (M)	_RYTLPQKLM(Oxidation (M))Q_		RYTLPQKLM(1)Q		RYTLPQKLM(40)Q	0	0	1			REV__EXPH5|p.P345Qfs*45|1|0.43|ENSG00000110723|chr11:108514475-108514475|A/-|frameshift_variant	REV__EXPH5|p.P345Qfs*45|1|0.43|ENSG00000110723|chr11:108514475-108514475|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.90521240234375	3	431.904307	1292.69109	3.2552	0.001406	-1.2288	-0.00053074	2.0264	0.00087521	431.90402227753293	24.42	0.22119	24.42	24.352	24.573	0					16	7	4	0	0	0	0.54861	1	7467	7467		40.058	10.507	1	311250	+		34444	13945	23865	23950	34871	34871		528			0.056453906168144385
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.7832641601562	2	543.782556	1085.55056	1.1637	0.00063282	0.10733	5.8365E-05	1.2711	0.00069119	543.7823740380638	35.31	0.13121	35.31	35.237	35.369	0					13	6	3	0	0	0	0.25716	1	11565	11565		54.776	1.4249	1	83158			34445	1278	23866	23951	34872	34872					0.011205549548776617
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.78271484375	2	543.782556	1085.55056	0.32261	0.00017543	0.28461	0.00015477	0.60722	0.0003302	543.782714144647	35.566	0.31091	35.566	35.477	35.787	0					14	8	2	0	0	0	0.16806	1	13783	13783		65.465	9.0316	1	338390			34446	1278	23866	23951	34873	34873					0.011205549548776617
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7838134765625	2	543.782556	1085.55056	-1.4912	-0.00081088	2.7349	0.0014872	1.2437	0.0006763	543.7840888105009	35.367	0.16313	35.367	35.275	35.438	0					10	6	2	0	0	0	0.22837	1	12580	12580		58.23	15.366	1	90552			34447	1278	23866	23951	34874	34874					0.011205549548776617
RYTPDSLLT	9	Unmodified	_RYTPDSLLT_					0	0	0			REV__nc|ENSG00000168439|P31948-3|STIP1	REV__nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2825927734375	2	533.282389	1064.55022	0.28949	0.00015438	-0.33895	-0.00018076	-0.049457	-2.6375E-05	533.2823776202996	33.932	0.78289	33.932	33.785	34.568	0					35	19	2	0	0	0	0.2873	1	13049	13049		51.335	1.8939	1	184880	+		34448	16260	23867	23952	34875	34875					0.020531352350417365
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	598.2907104492188	2	598.290745	1194.56694	0.64712	0.00038717	-0.4648	-0.00027809	0.18232	0.00010908	598.2902909351873	30.746	0.26966	30.746	30.658	30.928	0					12	6	3	0	0	0	0.51991	1	11132	11132		30.318	4.7437	1	199900			34449	5909	23868	23953	34876	34876					-0.022563638790188634
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	598.2911376953125	2	598.290745	1194.56694	0.058825	3.5195E-05	0.19941	0.00011931	0.25824	0.0001545	598.2909572238306	30.739	0.16855	30.739	30.629	30.797	0					6	3	2	0	0	0	0.50858	1	11425	11425		31.53	1.2121	1	177110			34450	5909	23868	23953	34877	34877					-0.022563638790188634
RYVDRVTEF	9	Unmodified	_RYVDRVTEF_					0	0	0		ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3;ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3	ENST00000582482.1_1_17:46058511-46058865:+|nuORF	ENST00000582482.1_1_17:46058511-46058865:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.8070068359375	2	592.806562	1183.59857	0.081363	4.8232E-05	0.27503	0.00016304	0.35639	0.00021127	592.8067735276986	30.937	0.40974	30.937	30.831	31.241	0					13	8	2	0	0	0	0.27123	1	11495	11495		45.972	1.5951	1	338230			34451	2530	23869	23954	34878	34878					0.01411628874939197
RYVDRVTEF	9	Unmodified	_RYVDRVTEF_					0	0	0		ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3;ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3	ENST00000582482.1_1_17:46058511-46058865:+|nuORF	ENST00000582482.1_1_17:46058511-46058865:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.806884765625	2	592.806562	1183.59857	1.469	0.00087083	-0.50974	-0.00030217	0.95926	0.00056866	592.8061964834321	30.921	0.26175	30.921	30.814	31.076	0					13	5	3	0	0	0	0.51757	1	11517	11517		23.523	0	1	361890			34452	2530	23869	23954	34879	34879					0.01411628874939197
RYVMTTTTL	9	Unmodified	_RYVMTTTTL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.2871704101562	2	543.286617	1084.55868	1.1529	0.00062637	0.028057	1.5243E-05	1.181	0.00064161	543.2865255434615	33.972	0.27502	33.972	33.885	34.16	0					19	12	3	0	0	0	0.10915	1	11080	11080		77.318	29.402	1	264010			34453	3884	23870	23955	34880	34880					0.019783658800179182
RYVMTTTTL	9	Unmodified	_RYVMTTTTL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.2874755859375	2	543.286617	1084.55868	0.33843	0.00018387	1.1003	0.0005978	1.4388	0.00078167	543.2869508504908	34.217	0.36005	34.217	34.094	34.454	0					23	9	4	0	0	0	0.035062	1	12729	12729		104.06	24.344	1	1337000			34454	3884	23870	23955	34881	34881					0.019783658800179182
RYVMTTTTL	9	Unmodified	_RYVMTTTTL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2869873046875	2	543.286617	1084.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.034	1	34.034	33.534	34.534	0								0	0	0	0.3245	1	11458	11458		30.318	8.3578	1				34455	3884	23870	23955	34882	34882					0.019783658800179182
RYVMTTTTL	9	Unmodified	_RYVMTTTTL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.286376953125	2	543.286617	1084.55868	0.32078	0.00017428	0.35583	0.00019332	0.67662	0.0003676	543.2866937489541	34.208	0.21475	34.208	34.121	34.336	0					13	5	3	0	0	0	0.21263	1	13155	13155		60.118	5.3419	1	523910			34456	3884	23870	23955	34883	34883					0.019783658800179182
RYVTHNRAH	9	Unmodified	_RYVTHNRAH_					0	0	0		ENSG00000078401|ENST00000379375|EDN1	ENSG00000078401|ENST00000379375|EDN1	ENSG00000078401|ENST00000379375|EDN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.3024291992188	2	577.302313	1152.59007	0.0052091	3.0072E-06	1.109	0.00064021	1.1142	0.00064321	577.303296075033	19.759	0.11224	19.759	19.65	19.763	0					7	4	2	0	0	0	0.45358	1	5381	5381		37.159	2.9866	1	47244			34457	1601	23871	23956	34884	34884					0.019881197489894475
RYYQNRALL	9	Unmodified	_RYYQNRALL_					0	0	0			REV__nc|ENSG00000168333|Q8WWR9-2|PPDPFL	REV__nc|ENSG00000168333|Q8WWR9-2|PPDPFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	598.8323364257812	2	598.830372	1195.64619	3.1539	0.0018886	-0.30701	-0.00018385	2.8468	0.0017048	598.8302899310205	24.254	0.56639	24.254	24.045	24.611	0					36	11	4	0	0	0	0.1115	1	8302	8302		60.294	12.637	1	2361500	+		34458	16252	23872	23957	34885	34885					0.05619327865792911
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.2688293457031	2	422.268553	842.522553	1.2749	0.00053835	-1.5489	-0.00065404	-0.27396	-0.00011569	422.2679211567518	30.521	0.36695	30.521	30.429	30.796	0					24	14	3	0	0	0	0.0041499	1	9725	9725		161.9	57.841	1	682720			34459	4144	23873	23958	34886	34886					0.09499276765473041
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2683410644531	2	422.268553	842.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.215	1	31.215	30.715	31.715	0								0	0	0	0.3304	1	11341	11341		29.15	6.1071	1				34460	4144	23873	23958	34887	34887					0.09499276765473041
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.2683410644531	2	422.268553	842.522553	-0.18767	-7.9246E-05	-0.27709	-0.00011701	-0.46476	-0.00019625	422.26841757428366	30.79	0.45982	30.79	30.649	31.109	0					25	10	4	0	0	0	0.0025305	1	11536	11536		171.38	43.923	1	2673900			34461	4144	23873	23958	34888	34888					0.09499276765473041
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.2690124511719	2	422.268553	842.522553	0.13067	5.5176E-05	0.30535	0.00012894	0.43602	0.00018412	422.2686538305282	30.602	0.19961	30.602	30.48	30.68	0					7	5	2	0	0	0	0.0406	1	10433	10433		98.629	25.75	1	61768			34462	4144	23873	23958	34889	34889					0.09499276765473041
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.2684326171875	2	422.268553	842.522553	-0.33743	-0.00014249	0.093218	3.9363E-05	-0.24422	-0.00010313	422.2686107095018	30.789	0.41411	30.789	30.629	31.043	0					14	8	2	0	0	0	0.014688	1	11423	11423		131.03	48.281	1	849370			34463	4144	23873	23958	34890	34890					0.09499276765473041
SAAAGGLGSLV	11	Unmodified	_SAAAGGLGSLV_					0	0	0			REV__nc|ENSG00000008869|Q9P2D3-2|HEATR5B	REV__nc|ENSG00000008869|Q9P2D3-2|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7520446777344	2	451.750724	901.486896	-0.40861	-0.00018459	0.76755	0.00034674	0.35894	0.00016215	451.75115755678297	26.662	0.72123	26.662	26.349	27.07	0					28	14	3	0	0	0	0.49805	1	9506	9506		44.377	1.981	1	2552500	+		34464	12882	23874	23959	34891	34891					0.032211945178119095
SAAASGGLLK	10	Unmodified	_SAAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.75299072265625	2	437.753267	873.491981	0.6107	0.00026733	-3.9928	-0.0017479	-3.3821	-0.0014805	437.75262135076724	23.973	0.54078	23.973	23.647	24.188	0					24	12	3	0	0	0	0.065778	1	8042	8042		104.01	13.413	1	803390			34465	6530	23875	23960	34892	34892					0.05017498380436791
SAAASGGLLK	10	Unmodified	_SAAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7528991699219	2	437.753267	873.491981	-0.40122	-0.00017564	-0.098811	-4.3255E-05	-0.50003	-0.00021889	437.7531876553368	23.971	0.26619	23.971	23.864	24.13	0					7	5	2	0	0	0	0.030421	2	8319	8298;8319		117.81	24.668	1	605450			34466	6530	23875	23960	34893;34894	34894					0.05017498380436791
SAAASGGLLK	10	Unmodified	_SAAASGGLLK_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;VCPIP1|p.A460Qfs*2|1|0.36|ENSG00000175073|chr8:66665582-66665582|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.753173828125	2	437.753267	873.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.967	1	23.967	23.467	24.467	0								0	0	0	0.085927	1	8201	8201		82.75	3.2995	1				34467	6530	23875	23960	34895	34895					0.05017498380436791
SAAAVSMLK	9	Unmodified	_SAAAVSMLK_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2449645996094	2	439.244221	876.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.289	1	28.289	27.789	28.789	0								0	0	0	0.15687	1	9981	9981		58.23	10.573	1				34468	1193	23876	23961	34896	34896					0.030710401340684257
SAAAVSMLK	9	Unmodified	_SAAAVSMLK_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2439880371094	2	439.244221	876.473888	-0.36974	-0.00016241	-0.98978	-0.00043476	-1.3595	-0.00059716	439.2437222042103	28.25	0.25297	28.25	28.055	28.308	0					7	5	2	0	0	0	0.18416	1	10340	10340		63.534	19.417	1	79187			34469	1193	23876	23961	34897	34897					0.030710401340684257
SAADIVLSK	9	Unmodified	_SAADIVLSK_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF;PMS1|p.N469Mfs*7|1|0.45|ENSG00000064933|chr2:189854675-189854675|A/-|frameshift_variant	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.26080322265625	2	452.260925	902.507297	0.25218	0.00011405	-0.22708	-0.0001027	0.025091	1.1348E-05	452.26069920517756	30.633	0.1937	30.633	30.537	30.73	0					6	4	2	0	0	0	0.090954	1	11054	11054		81.525	35.553	1	79909			34470	1358	23877	23962	34898	34898					0.05214365177619129
SAADLDNRFRK	11	Unmodified	_SAADLDNRFRK_					0	0	0		ENSG00000169047|ENST00000305123|IRS1;IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.5615234375	3	431.561709	1291.6633	0.75952	0.00032778	-1.3342	-0.00057579	-0.57467	-0.00024801	431.56112047124606	22.438	0.23498	22.438	22.34	22.575	0					14	5	4	0	0	0	0.50799	1	7300	7300		43.651	19.419	1	854900			34471	6143	23878	23963	34899	34899					0.029132036809414785
SAADLDNRFRK	11	Unmodified	_SAADLDNRFRK_					0	0	0		ENSG00000169047|ENST00000305123|IRS1;IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.5626525878906	3	431.561709	1291.6633	-0.39672	-0.00017121	0.72936	0.00031476	0.33264	0.00014356	431.56237099893576	22.213	0.10167	22.213	22.157	22.259	0					6	2	3	0	0	0	0.59204	1	6590	6590		37.508	13.276	1	63015			34472	6143	23878	23963	34900	34900					0.029132036809414785
SAADLDNRFRK	11	Unmodified	_SAADLDNRFRK_					0	0	0		ENSG00000169047|ENST00000305123|IRS1;IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.5616760253906	3	431.561709	1291.6633	0.93716	0.00040444	-1.1378	-0.00049101	-0.20059	-8.6567E-05	431.56112910026246	22.328	0.31655	22.328	22.173	22.489	0					15	6	4	0	0	0	0.63225	1	7421	7421		34.087	5.5098	1	1567000			34473	6143	23878	23963	34901	34901					0.029132036809414785
SAADVVVVH	9	Unmodified	_SAADVVVVH_					0	0	0		ENST00000484284.5_1_3:38175441-38178607:-|nuORF;ENST00000489559.1_1_3:38175990-38178538:-|nuORF;nc|ENSG00000060971|P09110-2|ACAA1;ACAA1|p.L369Wfs*7|1|0.31|ENSG00000060971|chr3:38125659-38125659|G/-|frameshift_variant;ENSG00000060971|ENST00000333167|ACAA1	ENST00000484284.5_1_3:38175441-38178607:-|nuORF	ENST00000484284.5_1_3:38175441-38178607:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.74566650390625	2	448.745442	895.476331	0.11524	5.1713E-05	-0.5531	-0.0002482	-0.43787	-0.00019649	448.74520754290995	27.329	0.268	27.329	27.221	27.489	0					12	6	3	0	0	0	0.032656	1	9536	9536		106.42	47.633	1	198880			34474	27	23879	23964	34902	34902					0.024412118633904356
SAADVVVVH	9	Unmodified	_SAADVVVVH_					0	0	0		ENST00000484284.5_1_3:38175441-38178607:-|nuORF;ENST00000489559.1_1_3:38175990-38178538:-|nuORF;nc|ENSG00000060971|P09110-2|ACAA1;ACAA1|p.L369Wfs*7|1|0.31|ENSG00000060971|chr3:38125659-38125659|G/-|frameshift_variant;ENSG00000060971|ENST00000333167|ACAA1	ENST00000484284.5_1_3:38175441-38178607:-|nuORF	ENST00000484284.5_1_3:38175441-38178607:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.7452087402344	2	448.745442	895.476331	-0.089681	-4.0244E-05	0.48353	0.00021698	0.39385	0.00017674	448.74550031174147	27.33	0.16858	27.33	27.22	27.389	0					6	3	2	0	0	0	0.087582	1	9901	9901		82.305	34.648	1	88085			34475	27	23879	23964	34903	34903					0.024412118633904356
SAAEASRAM	9	Unmodified	_SAAEASRAM_					0	0	0		ENSG00000101940|ENST00000376729|WDR13;nc|ENSG00000101940|Q9H1Z4-2|WDR13	ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2108154296875	2	447.210909	892.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.95	1	17.95	17.45	18.45	0								0	0	0	0.14211	1	4385	4385		61.691	10.499	1				34476	2142	23880	23965	34904	34904					-0.04324195427830091
SAAEASRAM	9	Unmodified	_SAAEASRAM_					0	0	0		ENSG00000101940|ENST00000376729|WDR13;nc|ENSG00000101940|Q9H1Z4-2|WDR13	ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.2106018066406	2	447.210909	892.407265	-0.12852	-5.7475E-05	-0.55306	-0.00024733	-0.68158	-0.00030481	447.2107828425776	18.201	0.17004	18.201	18.105	18.275	0					8	3	3	0	0	0	0.035106	1	5542	5542		104.01	35.167	1	297580			34477	2142	23880	23965	34905	34905					-0.04324195427830091
SAAEASRAM	9	Unmodified	_SAAEASRAM_					0	0	0		ENSG00000101940|ENST00000376729|WDR13;nc|ENSG00000101940|Q9H1Z4-2|WDR13	ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2105712890625	2	447.210909	892.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.053	1	18.053	17.553	18.553	0								0	0	0	0.23111	1	4634	4634		46.457	10.01	1				34478	2142	23880	23965	34906	34906					-0.04324195427830091
SAAEASRAM	9	Unmodified	_SAAEASRAM_					0	0	0		ENSG00000101940|ENST00000376729|WDR13;nc|ENSG00000101940|Q9H1Z4-2|WDR13	ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2109680175781	2	447.210909	892.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.205	1	18.205	17.705	18.705	0								0	0	0	0.045272	1	5404	5404		88.177	18.549	1				34479	2142	23880	23965	34907	34907					-0.04324195427830091
SAAEAVKEK	9	Unmodified	_SAAEAVKEK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7555847167969	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.153	1	14.153	13.653	14.653	0								0	0	0	0.0077941	1	3386	3386		112.11	27.192	1				34480	1919	23881	23966	34908	34908					0.028971771722467565
SAAEAVKEK	9	Unmodified	_SAAEAVKEK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7554626464844	2	466.756007	931.497461	-1.191	-0.00055589	0.49516	0.00023112	-0.6958	-0.00032477	466.7561908345252	14.083	0.11228	14.083	14.007	14.12	0					4	2	2	0	0	0	0.070005	1	3582	3582		88.177	3.2614	1	91383			34481	1919	23881	23966	34909	34909					0.028971771722467565
SAAELRHVM	9	Unmodified	_SAAELRHVM_					0	0	0		CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant;ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.26373291015625	2	507.263476	1012.5124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.388	1	24.388	23.888	24.888	0								0	0	0	0.23445	1	7459	7459		45.972	5.3996	1				34482	360	23882	23967	34910	34910					0.00664345768586827
SAAELRHVM	9	Unmodified	_SAAELRHVM_					0	0	0		CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant;ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2634582519531	2	507.263476	1012.5124	1.114	0.00056509	-1.4018	-0.0007111	-0.28785	-0.00014602	507.2627731278313	24.602	0.36334	24.602	24.494	24.857	0					13	7	3	0	0	0	0.3269	1	8639	8639		47.96	10.8	1	1017700			34483	360	23882	23967	34911	34911					0.00664345768586827
SAAELRHVM	9	Unmodified	_SAAELRHVM_					0	0	0		CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant;ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2642517089844	2	507.263476	1012.5124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.482	1	24.482	23.982	24.982	0								0	0	0	0.27939	1	7640	7640		39.253	0	1				34484	360	23882	23967	34912	34912					0.00664345768586827
SAAELRHVM	9	Unmodified	_SAAELRHVM_					0	0	0		CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant;ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	CALML3|p.E115Rfs*3|1|0.35|ENSG00000178363|chr10:5525424-5525424|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.263427734375	2	507.263476	1012.5124	2.9419	0.0014923	-3.5654	-0.0018086	-0.62344	-0.00031625	507.2620047930347	24.556	0.26	24.556	24.447	24.707	0					11	5	3	0	0	0	0.19952	1	8497	8497		61.691	4.9702	1	893900			34485	360	23882	23967	34913	34913					0.00664345768586827
SAAEPVGSK	9	Unmodified	_SAAEPVGSK_					0	0	0		ENST00000495285.1_1_3:197257612-197260782:-|nuORF;ENSG00000161267|ENST00000392379|BDH1	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2216796875	2	423.2218	844.429047	-0.2342	-9.9117E-05	0.21884	9.262E-05	-0.015351	-6.4968E-06	423.2218411660751	15.003	0.16846	15.003	14.893	15.062	0					5	3	2	0	0	0	0.14578	1	4006	4006		68.846	14.07	1	246330			34486	5407	23883	23968	34914	34914					0.0006093259238468818
SAAESFMKY	9	Unmodified	_SAAESFMKY_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2366333007812	2	517.236593	1032.45863	0.021607	1.1176E-05	0.52321	0.00027062	0.54481	0.0002818	517.2367803437799	35.99	0.1085	35.99	35.944	36.053	0					8	5	2	0	0	0	0.41113	1	12186	12186		40.778	8.0276	1	53977			34487	996	23884	23969	34915	34915					-0.05629871453788837
SAAESFMKY	9	Unmodified	_SAAESFMKY_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2366943359375	2	517.236593	1032.45863	1.5144	0.00078329	0.33123	0.00017133	1.8456	0.00095462	517.2374676384545	36.205	0.28124	36.205	36.113	36.394	0					17	8	3	0	0	0	0.19952	1	14078	14078		61.691	0.71934	1	346860			34488	996	23884	23969	34916	34916					-0.05629871453788837
SAAESFMKY	9	Unmodified	_SAAESFMKY_					0	0	0		NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant;nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2;NOS2|p.A650Pfs*53|1|0.21|ENSG00000007171|chr17:27769063-27769063|C/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	NOS2|p.Y709*|1|0.33|ENSG00000007171|chr17:27767745-27767745|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2364501953125	2	517.236593	1032.45863	1.5518	0.00080264	-0.50637	-0.00026191	1.0454	0.00054073	517.2370685825872	36.124	0.41444	36.124	36.013	36.428	0					15	8	3	0	0	0	0.085655	1	14021	14021		82.75	43.498	1	486710			34489	996	23884	23969	34917	34917					-0.05629871453788837
SAAEVVIHA	9	Unmodified	_SAAEVVIHA_					0	0	0			REV__ENST00000569796.1_1_16:2278422-2280215:+|nuORF	REV__ENST00000569796.1_1_16:2278422-2280215:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.74481201171875	2	448.745442	895.476331	-0.3025	-0.00013575	-0.40237	-0.00018056	-0.70487	-0.00031631	448.74525534787466	14.555	0.55163	14.555	14.477	15.029	0					53	23	5	0	0	0	0.50461	1	3132	3132		31.955	2.8053	1	10213000	+		34490	12761	23885	23970	34918	34918					0.02441211863379067
SAAFPGASL	9	Unmodified	_SAAFPGASL_					0	0	0		nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.71343994140625	2	410.713611	819.412668	1.1105	0.0004561	-1.0244	-0.00042073	0.086113	3.5368E-05	410.7130966480006	43.107	0.39604	43.107	42.889	43.285	0					29	20	2	0	0	0	0.071197	1	16851	16851		87.754	19.27	1	172210			34491	6950	23886	23971	34919	34919					-0.004261485737060866
SAAFPGASL	9	Unmodified	_SAAFPGASL_					0	0	0		nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	410.71343994140625	2	410.713611	819.412668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.422	1	42.422	41.922	42.922	0								0	0	0	0.2591	1	14826	14826		42.396	1.8235	1				34492	6950	23886	23971	34920	34920					-0.004261485737060866
SAAGAAFTK	9	Unmodified	_SAAGAAFTK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.2192687988281	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.133	1	20.133	19.633	20.633	0								0	0	0	0.015103	1	5338	5338		104.01	35.529	1				34493	8036	23887	23972	34921	34921					0.005252538005720453
SAAGAAFTK	9	Unmodified	_SAAGAAFTK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.21893310546875	2	412.21906	822.423567	0.63839	0.00026316	-0.53746	-0.00022155	0.10093	4.1604E-05	412.2188556168117	20.104	0.076168	20.104	20.069	20.145	0					4	2	2	0	0	0	0.070005	1	5335	5335		88.177	40.261	1	101920			34494	8036	23887	23972	34922	34922					0.005252538005720453
SAAGAAFTK	9	Unmodified	_SAAGAAFTK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.2192687988281	2	412.21906	822.423567	0.57339	0.00023636	-0.15155	-6.2473E-05	0.42183	0.00017389	412.2190352413841	20.459	0.14898	20.459	20.402	20.551	0					8	3	3	0	0	0	0.0076184	1	6358	6358		146.79	66.846	1	226720			34495	8036	23887	23972	34923	34923					0.005252538005720453
SAAGAAFTK	9	Unmodified	_SAAGAAFTK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	412.2190246582031	2	412.21906	822.423567	3.4227	0.0014109	-3.3607	-0.0013853	0.062045	2.5576E-05	412.21774431638687	20.167	0.11201	20.167	20.093	20.205	0					6	3	2	0	0	0	0.037924	1	5582	5582		101.25	32.768	1	110320			34496	8036	23887	23972	34924	34924					0.005252538005720453
SAAGAAFTK	9	Unmodified	_SAAGAAFTK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.2188720703125	2	412.21906	822.423567	0.058663	2.4182E-05	-0.28291	-0.00011662	-0.22425	-9.2438E-05	412.21889339290317	20.389	0.26609	20.389	20.28	20.546	0					11	5	3	0	0	0	0.019258	1	6587	6587		123.21	54.723	1	1313000			34497	8036	23887	23972	34925	34925					0.005252538005720453
SAAGAAFTK	9	Unmodified	_SAAGAAFTK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.2193298339844	2	412.21906	822.423567	0.10673	4.3997E-05	0.38306	0.00015791	0.48979	0.0002019	412.21929068024855	20.233	0.11021	20.233	20.141	20.251	0					4	2	2	0	0	0	0.22823	1	5644	5644		58.246	21.087	1	94814			34498	8036	23887	23972	34926	34926					0.005252538005720453
SAAGAAFTK	9	Unmodified	_SAAGAAFTK_					0	0	0		nc|ENSG00000258315|Q8IXM2-2|BAP18;ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18;ENST00000549857.1_1_17:6918176-6918548:+|nuORF	nc|ENSG00000258315|Q8IXM2-2|BAP18	nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.21893310546875	2	412.21906	822.423567	-0.43852	-0.00018077	0.22043	9.0865E-05	-0.21809	-8.99E-05	412.21915564786514	20.389	0.21734	20.389	20.243	20.46	0					11	4	4	0	0	0	0.014413	1	6460	6460		131.62	63.132	1	720010			34499	8036	23887	23972	34927	34927					0.005252538005720453
SAAGHVLVK	9	Unmodified	_SAAGHVLVK_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.2635498046875	2	441.263802	880.513051	-0.28694	-0.00012662	0.1074	4.739E-05	-0.17955	-7.9228E-05	441.26377243165007	18.246	0.083389	18.246	18.202	18.286	0					9	3	3	0	0	0	0.028876	1	4512	4512		110.12	41.333	1	129870			34500	6964	23888	23973	34928	34928					0.06801508479941276
SAAGHVLVK	9	Unmodified	_SAAGHVLVK_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.2635803222656	2	441.263802	880.513051	-0.3414	-0.00015065	-0.02759	-1.2174E-05	-0.36899	-0.00016282	441.26378621847323	18.596	0.18172	18.596	18.501	18.683	0					9	4	3	0	0	0	0.019882	1	5474	5474		122.18	31.399	1	1178000			34501	6964	23888	23973	34929	34929					0.06801508479941276
SAAGHVLVK	9	Unmodified	_SAAGHVLVK_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.2635192871094	2	441.263802	880.513051	-1.0844	-0.00047849	0.63733	0.00028123	-0.44703	-0.00019726	441.26404140276406	18.263	0.32449	18.263	18.179	18.503	0					29	12	4	0	0	0	0.014688	1	4733	4733		131.03	51.092	1	2948500			34502	6964	23888	23973	34930	34930					0.06801508479941276
SAAGHVLVK	9	Unmodified	_SAAGHVLVK_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.26348876953125	2	441.263802	880.513051	0.52489	0.00023162	-1.0157	-0.00044819	-0.49082	-0.00021658	441.26339858520834	18.552	0.31868	18.552	18.443	18.761	0					18	6	5	0	0	0	0.0086566	1	5699	5699		143.89	56.132	1	19892000			34503	6964	23888	23973	34931	34931					0.06801508479941276
SAAGHVLVK	9	Unmodified	_SAAGHVLVK_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.26409912109375	2	441.263802	880.513051	-0.54789	-0.00024176	0.068849	3.0381E-05	-0.47904	-0.00021138	441.2638111838924	18.338	0.18457	18.338	18.266	18.45	0					12	5	3	0	0	0	0.0051608	1	4759	4759		157.33	77.878	1	2219500			34504	6964	23888	23973	34932	34932					0.06801508479941276
SAAGSPRPL	9	Unmodified	_SAAGSPRPL_					0	0	0			REV__ENST00000569473.1_1_15:89878657-89878771:+|nuORF	REV__ENST00000569473.1_1_15:89878657-89878771:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.2375793457031	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.3	1	19.3	18.8	19.8	0								0	0	0	0.31838	1	4967	4967		31.53	4.7337	1		+		34505	20366	23889	23974	34933	34933					0.027963450661786737
SAAIKELLA	9	Unmodified	_SAAIKELLA_					0	0	0			REV__ENSG00000279169|ENST00000625019|PRAMEF13	REV__ENSG00000279169|ENST00000625019|PRAMEF13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2786865234375	2	458.279118	914.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.852	1	37.852	37.352	38.352	0								0	0	0	0.36609	1	14828	14828		20.947	1.587	1		+		34506	14161	23890	23975	34934	34934					0.08299242074326685
SAAKAVKPK	9	Unmodified	_SAAKAVKPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2869873046875	2	450.287277	898.560001	-1.1855	-0.00053384	0.95369	0.00042943	-0.23186	-0.0001044	450.287629047086	11.712	0.1228	11.712	11.636	11.759	0					6	4	2	0	0	0	0.056004	1	2289	2289		93.143	5.3889	1	173140			34507	7222	23891	23976	34935	34935					0.10666368031081674
SAAKAVKPK	9	Unmodified	_SAAKAVKPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2874450683594	2	450.287277	898.560001	0.68086	0.00030658	-0.74123	-0.00033377	-0.060371	-2.7184E-05	450.2870112105305	11.988	0.45878	11.988	11.895	12.354	0					25	12	4	0	0	0	0.047855	1	2597	2597		96.034	13.729	1	4472200			34508	7222	23891	23976	34936	34936					0.10666368031081674
SAAKAVKPK	9	Unmodified	_SAAKAVKPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2872314453125	2	450.287277	898.560001	-0.19789	-8.9109E-05	-0.046932	-2.1133E-05	-0.24483	-0.00011024	450.2871712029934	11.666	0.092304	11.666	11.603	11.695	0					6	3	2	0	0	0	0.12834	1	2224	2224		72.879	21.544	1	155700			34509	7222	23891	23976	34937	34937					0.10666368031081674
SAAKAVKPK	9	Unmodified	_SAAKAVKPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.287109375	2	450.287277	898.560001	-0.40148	-0.00018078	0.19245	8.666E-05	-0.20902	-9.412E-05	450.28730879808654	11.942	0.18696	11.942	11.813	12	0					12	5	3	0	0	0	0.047855	1	2431	2431		96.034	8.2793	1	1207600			34510	7222	23891	23976	34938	34938					0.10666368031081674
SAAKAVKPKA	10	Unmodified	_SAAKAVKPKA_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2750244140625	2	485.805834	969.597115	-0.089098	-4.3284E-05	0.028442	1.3817E-05	-0.060656	-2.9467E-05	485.80584630794266	12.796	0.316	12.796	12.642	12.958	0					14	7	3	0	0	0	0.50881	1	2945	2945		44.377	10.205	1	271260			34511	7222	23892	23977	34939	34939					0.11110039576840336
SAAKEFFTK	9	Unmodified	_SAAKEFFTK_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7745361328125	2	514.7742	1027.53385	0.73168	0.00037665	-0.2498	-0.00012859	0.48187	0.00024806	514.7741775633715	24.766	0.16542	24.766	24.661	24.826	0					7	3	3	0	0	0	0.079477	1	8718	8718		84.817	26.587	1	153790			34512	4005	23893	23978	34940	34940					0.021180540689329064
SAAKGVAAY	9	Unmodified	_SAAKGVAAY_					0	0	0		ENST00000596648.1_1_19:50918770-50919194:+|nuORF;ENSG00000062822|ENST00000440232|POLD1	ENST00000596648.1_1_19:50918770-50919194:+|nuORF	ENST00000596648.1_1_19:50918770-50919194:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.2272033691406	2	419.226885	836.439217	0.43912	0.00018409	-0.14392	-6.0335E-05	0.2952	0.00012376	419.22669493564314	21.155	0.18276	21.155	21.064	21.247	0					6	4	2	0	0	0	0.16002	1	6690	6690		66.429	20.477	1	47620			34513	1334	23894	23979	34941	34941					0.01445540317592986
SAAKGVAAY	9	Unmodified	_SAAKGVAAY_					0	0	0		ENST00000596648.1_1_19:50918770-50919194:+|nuORF;ENSG00000062822|ENST00000440232|POLD1	ENST00000596648.1_1_19:50918770-50919194:+|nuORF	ENST00000596648.1_1_19:50918770-50919194:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2267150878906	2	419.226885	836.439217	0.0035259	1.4781E-06	-0.37275	-0.00015627	-0.36922	-0.00015479	419.2267765864469	21.087	0.21192	21.087	20.98	21.192	0					6	4	2	0	0	0	0.12239	1	6925	6925		74.255	36.444	1	260130			34514	1334	23894	23979	34942	34942					0.01445540317592986
SAAKGVAAY	9	Unmodified	_SAAKGVAAY_					0	0	0		ENST00000596648.1_1_19:50918770-50919194:+|nuORF;ENSG00000062822|ENST00000440232|POLD1	ENST00000596648.1_1_19:50918770-50919194:+|nuORF	ENST00000596648.1_1_19:50918770-50919194:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.22674560546875	2	419.226885	836.439217	-0.29754	-0.00012474	0.15953	6.6879E-05	-0.13801	-5.7858E-05	419.22689401836345	21.051	0.11795	21.051	20.992	21.11	0					6	2	3	0	0	0	0.16002	1	6804	6804		66.429	25.651	1	315540			34515	1334	23894	23979	34943	34943					0.01445540317592986
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2737121582031	2	498.274032	994.533512	0.22798	0.0001136	0.16277	8.1104E-05	0.39075	0.0001947	498.27402953044765	35.682	0.19715	35.682	35.591	35.788	0					17	9	3	0	0	0	0.30257	1	11680	11680		50.034	13.587	1	152930			34516	7310	23895	23980	34944	34944					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.273681640625	2	498.274032	994.533512	0.69147	0.00034454	-1.366	-0.00068065	-0.67454	-0.00033611	498.2734757858269	35.944	0.42883	35.944	35.829	36.257	0					20	11	3	0	0	0	0.026848	1	13511	13511		112.11	53.325	1	741720			34517	7310	23895	23980	34945	34945					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2734069824219	2	498.274032	994.533512	-1.104	-0.0005501	0.62691	0.00031237	-0.4771	-0.00023773	498.2743561899592	35.75	0.20286	35.75	35.64	35.843	0					22	10	3	0	0	0	0.34452	1	12075	12075		46.457	20.883	1	213080			34518	7310	23895	23980	34946	34946					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2735595703125	2	498.274032	994.533512	0.82025	0.00040871	-0.91655	-0.00045669	-0.096298	-4.7983E-05	498.2735056612818	35.958	0.23894	35.958	35.818	36.057	0					17	7	3	0	0	0	0.054723	1	13948	13948		93.598	34.816	1	1358000			34519	7310	23895	23980	34947	34947					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2747802734375	2	498.274032	994.533512	-0.218	-0.00010862	1.6265	0.00081046	1.4085	0.00070183	498.27486791481533	35.701	0.065475	35.701	35.675	35.74	0					4	2	2	0	0	0	0.16806	1	12737	12737		65.465	5.1714	1	32192			34520	7310	23895	23980	34948	34948					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.27392578125	2	498.274032	994.533512	0.17562	8.7509E-05	-0.32716	-0.00016302	-0.15154	-7.5507E-05	498.2737430891396	35.716	0.19389	35.716	35.622	35.816	0					11	7	2	0	0	0	0.070005	1	12734	12734		88.177	44.06	1	368480			34521	7310	23895	23980	34949	34949					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2738952636719	2	498.274032	994.533512	-2.232	-0.0011122	2.7398	0.0013652	0.50775	0.000253	498.2751714236426	35.708	0.14648	35.708	35.661	35.808	0					7	5	2	0	0	0	0.35021	1	12742	12742		45.972	10.772	1	98173			34522	7310	23895	23980	34950	34950					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2740173339844	2	498.274032	994.533512	-0.7277	-0.0003626	0.087009	4.3354E-05	-0.64069	-0.00031924	498.27420970347424	35.89	0.36148	35.89	35.737	36.098	0					13	7	2	0	0	0	0.040209	1	13883	13883		99.013	24.758	1	538630			34523	7310	23895	23980	34951	34951					0.036026343490902946
SAAKLLTEY	9	Unmodified	_SAAKLLTEY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;MAOA|p.G405Afs*12|1|0.26|ENSG00000189221|chrX:43741995-43741995|G/-|frameshift_variant	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.27374267578125	2	498.274032	994.533512	1.0281	0.00051225	-1.2096	-0.0006027	-0.18152	-9.0446E-05	498.2733496484941	35.873	0.41564	35.873	35.768	36.183	0					16	8	3	0	0	0	0.029571	1	13876	13876		109.44	53.935	1	1862300			34524	7310	23895	23980	34952	34952					0.036026343490902946
SAAKSLLKK	9	Unmodified	_SAAKSLLKK_					0	0	0		nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.30780029296875	2	473.30821	944.601866	0.59862	0.00028333	-1.1965	-0.00056632	-0.5979	-0.00028299	473.30765465928846	16.809	0.15026	16.809	16.712	16.863	0					9	3	4	0	0	0	0.099758	1	4871	4871		79.489	6.6098	1	687510			34525	11568	23896	23981	34953	34953					0.12734923719619928
SAAKSLLKK	9	Unmodified	_SAAKSLLKK_					0	0	0		nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.30792236328125	2	473.30821	944.601866	-0.5032	-0.00023817	0.033401	1.5809E-05	-0.4698	-0.00022236	473.3080208008789	16.598	0.13038	16.598	16.516	16.646	0					5	3	2	0	0	0	0.070005	1	3981	3981		88.177	20.683	1	122480			34526	11568	23896	23981	34954	34954					0.12734923719619928
SAAKSLLKK	9	Unmodified	_SAAKSLLKK_					0	0	0		nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.3077087402344	2	473.30821	944.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.611	1	16.611	16.111	17.111	0								0	0	0	0.061959	1	3977	3977		82.75	13.123	1				34527	11568	23896	23981	34955	34955					0.12734923719619928
SAAKSLLKK	9	Unmodified	_SAAKSLLKK_					0	0	0		nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	nc|ENSG00000145349|Q13557-9|CAMK2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.3078918457031	2	473.30821	944.601866	0.65375	0.00030942	-1.2517	-0.00059243	-0.59793	-0.00028301	473.3075353211978	16.788	0.11386	16.788	16.73	16.844	0					4	2	2	0	0	0	0.099758	1	4734	4734		79.489	10.643	1	1217100			34528	11568	23896	23981	34956	34956					0.12734923719619928
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2818908691406	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.694	1	19.694	19.194	20.194	0								0	0	0	0.010204	1	5988	5988		109.44	13.624	1				34529	9890	23897	23982	34957	34957					0.08177760305852644
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2823486328125	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.379	1	19.379	18.879	19.879	0								0	0	0	0.14961	1	5238	5238		59.931	5.1545	1				34530	9890	23897	23982	34958	34958					0.08177760305852644
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2818603515625	2	466.282192	930.549831	-0.13487	-6.2889E-05	-0.60478	-0.000282	-0.73965	-0.00034489	466.2819234707099	19.585	0.2622	19.585	19.479	19.741	0					9	5	3	0	0	0	0.0088974	1	6225	6225		143.37	29.962	1	576360			34531	9890	23897	23982	34959	34959					0.08177760305852644
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2821350097656	2	466.282192	930.549831	-0.17985	-8.3861E-05	0.73187	0.00034126	0.55202	0.0002574	466.28220762045987	19.428	0.19341	19.428	19.369	19.562	0					5	4	2	0	0	0	0.22823	1	5283	5283		58.246	3.4699	1	147940			34532	9890	23897	23982	34960	34960					0.08177760305852644
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2818298339844	2	466.282192	930.549831	-0.61591	-0.00028719	0.26577	0.00012393	-0.35014	-0.00016326	466.28219225561736	19.44	0.19255	19.44	19.356	19.548	0					7	4	2	0	0	0	0.24334	1	5279	5279		56.434	5.0983	1	127990			34533	9890	23897	23982	34961	34961					0.08177760305852644
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2818298339844	2	466.282192	930.549831	-0.49888	-0.00023262	1.1683	0.00054478	0.66946	0.00031216	466.2828886925855	19.599	0.26479	19.599	19.492	19.757	0					12	5	3	0	0	0	0.017741	1	6077	6077		125.71	24.46	1	1529100			34534	9890	23897	23982	34962	34962					0.08177760305852644
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2818298339844	2	466.282192	930.549831	0.65333	0.00030464	-1.1895	-0.00055463	-0.53615	-0.00025	466.2817200102606	19.583	0.41366	19.583	19.276	19.69	0					19	8	3	0	0	0	0.02953	1	6091	6091		109.48	24.318	1	1623900			34535	9890	23897	23982	34963	34963					0.08177760305852644
SAAKTFITK	9	Unmodified	_SAAKTFITK_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF;ENSG00000146247|ENST00000275034|PHIP	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7848205566406	2	483.784567	965.554582	1.1582	0.00056031	-1.0861	-0.00052545	0.072056	3.486E-05	483.7840174805334	20.226	0.087553	20.226	20.179	20.267	0					6	3	2	0	0	0	0.061298	1	5372	5372		91.265	19.97	1	106960			34536	4720	23898	23983	34964	34964					0.07042644448597457
SAAKTFITK	9	Unmodified	_SAAKTFITK_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF;ENSG00000146247|ENST00000275034|PHIP	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.8586730957031	3	322.858804	965.554582	0.28861	9.3181E-05	0.025709	8.3003E-06	0.31432	0.00010148	322.85877637574555	20.224	0.11816	20.224	20.159	20.277	0					7	4	2	0	0	0	0.36892	1	5375	5375		59.931	30.761	1	47124			34537	4720	23898	23983	34965	34965					0.07042644448597457
SAAKTFITK	9	Unmodified	_SAAKTFITK_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF;ENSG00000146247|ENST00000275034|PHIP	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7842102050781	2	483.784567	965.554582	0.32077	0.00015518	-0.8499	-0.00041117	-0.52913	-0.00025599	483.78409674350894	20.586	0.19126	20.586	20.493	20.685	0					8	4	3	0	0	0	0.0063888	1	6420	6420		152.06	61.284	1	1287600			34538	4720	23898	23983	34966	34966					0.07042644448597457
SAALGVRR	8	Unmodified	_SAALGVRR_					0	0	0			REV__ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant	REV__ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.254150390625	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.859	1	44.859	44.359	45.359	0								0	0	0	1.7419	1	15349	15349		18.324	0	1		+		34539	12068	23899	23984	34967	34967					0.07187757539986706
SAALLKNKY	9	Unmodified	_SAALLKNKY_					0	0	0		tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.376	1	35.376	34.876	35.876	0								0	0	0	0.37496	1	13704	13704		25.574	11.437	1				34540	22854	23900	23985	34968	34968					0.0781033333993264
SAAMVFSAL	9	Oxidation (M)	_SAAM(Oxidation (M))VFSAL_		SAAM(1)VFSAL		SAAM(74)VFSAL	0	0	1		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.7286071777344	2	456.728403	911.442254	0.87871	0.00040133	-1.0803	-0.00049338	-0.20155	-9.2054E-05	456.7279480959584	48.574	0.07959	48.574	48.554	48.634	0					8	4	2	0	0	0	0.12239	1	19296	19296		74.255	26.339	1	81693			34541	7110	23901	23986	34969	34969		285			-0.0170095261988763
SAANETPRW	9	Unmodified	_SAANETPRW_					0	0	0			REV__chr19:38264998-38289138|102|14.38|0.53|4.76|+|0|SPINT2,SPINT2|1	REV__chr19:38264998-38289138|102|14.38|0.53|4.76|+|0|SPINT2,SPINT2|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.5015563964844	3	344.501679	1030.48321	-0.76546	-0.0002637	0.41796	0.00014399	-0.3475	-0.00011971	344.5018279135197	22.172	0.22989	22.172	22.071	22.3	0					15	7	3	0	0	0	0.42902	1	6475	6475		39.253	8.9351	1	1128800	+		34542	12479	23902	23987	34970	34970					-0.030814752560445413
SAAPAHSPR	9	Unmodified	_SAAPAHSPR_					0	0	0		ENST00000376499.7_2_9:84303220-84303679:-|nuORF	ENST00000376499.7_2_9:84303220-84303679:-|nuORF	ENST00000376499.7_2_9:84303220-84303679:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2329406738281	2	447.233033	892.451513	-0.42641	-0.0001907	-0.13373	-5.9809E-05	-0.56014	-0.00025051	447.2330080672433	13.376	0.41276	13.376	13.292	13.705	0					20	11	3	0	0	0	0.39215	1	3054	3054		42.396	5.237	1	283180			34543	9041	23903	23988	34971	34971					0.0009857678066964581
SAAPFASLPR	10	Unmodified	_SAAPFASLPR_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.77886962890625	2	508.779816	1015.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.908	1	11.908	11.408	12.408	0								0	0	0	0.35368	1	2395	2395		42.396	0	1		+		34544	18308	23904	23989	34972	34972					0.037928761630723784
SAAPIRSAL	9	Unmodified	_SAAPIRSAL_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2611389160156	2	443.261259	884.507966	0.58176	0.00025787	-1.3449	-0.00059612	-0.7631	-0.00033825	443.2608663865518	27.212	0.25669	27.212	27.048	27.305	0					12	6	3	0	0	0	0.36892	1	9492	9492		44.377	3.8046	1	351910	+		34545	16228	23905	23990	34973	34973					0.0610920461731439
SAAPPACQK	9	Unmodified	_SAAPPACQK_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.71820068359375	2	436.71837	871.422187	-0.55124	-0.00024074	0.56054	0.0002448	0.0092977	4.0605E-06	436.71851645523634	16.005	0.47099	16.005	15.896	16.367	0					11	9	2	0	0	0	0.2873	1	4354	4354		51.335	14.176	1	270030			34546	6522	23906	23991	34974	34974					-0.01866703559835514
SAAPPGAWPW	10	Unmodified	_SAAPPGAWPW_					0	0	0		ENSG00000237412|ENST00000617714|PRSS56	ENSG00000237412|ENST00000617714|PRSS56	ENSG00000237412|ENST00000617714|PRSS56	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	346.83648681640625	3	347.171382	1038.49232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.232	1	26.232	25.732	26.732	0								0	0	0	0.3805	1	8222	8222		36.447	2.2742	1				34547	7914	23907	23992	34975	34975					-0.02539081899726625
SAAPPQEKK	9	Unmodified	_SAAPPQEKK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;ENST00000513666.5_1_5:96073558-96090478:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2635803222656	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.211	1	12.211	11.711	12.711	0								0	0	0	0.30009	1	2310	2310		35.152	9.578	1				34548	5038	23908	23993	34976	34976					0.03436883409131042
SAAPPQEKK	9	Unmodified	_SAAPPQEKK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;ENST00000513666.5_1_5:96073558-96090478:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2637939453125	2	478.263999	954.513445	-0.28186	-0.0001348	-0.32803	-0.00015689	-0.60989	-0.00029169	478.2640398757218	12.4	0.4649	12.4	12.293	12.758	0					44	15	5	0	0	0	0.061298	1	2583	2583		91.265	3.5109	1	3780200			34549	5038	23908	23993	34977	34977					0.03436883409131042
SAAPPQEKK	9	Unmodified	_SAAPPQEKK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;ENST00000513666.5_1_5:96073558-96090478:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2637939453125	2	478.263999	954.513445	-0.29411	-0.00014066	-0.18112	-8.6624E-05	-0.47524	-0.00022729	478.26385496483124	12.162	0.39396	12.162	12.098	12.492	0					39	24	3	0	0	0	0.27123	1	2384	2384		53.089	1.7535	1	354380			34550	5038	23908	23993	34978	34978					0.03436883409131042
SAAPPQEKK	9	Unmodified	_SAAPPQEKK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;ENST00000513666.5_1_5:96073558-96090478:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2638244628906	2	478.263999	954.513445	-0.43909	-0.00021	0.091839	4.3923E-05	-0.34725	-0.00016608	478.2640690483701	12.422	0.51144	12.422	12.331	12.843	0					40	12	4	0	0	0	0.019258	1	2796	2796		123.21	35.454	1	7657700			34551	5038	23908	23993	34979	34979					0.03436883409131042
SAAPPTVGR	9	Unmodified	_SAAPPTVGR_					0	0	0		ENSG00000164050|ENST00000296440|PLXNB1;nc|ENSG00000164050|O43157-2|PLXNB1;PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant;nc|ENSG00000164050|O43157-3|PLXNB1	ENSG00000164050|ENST00000296440|PLXNB1	ENSG00000164050|ENST00000296440|PLXNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.2378845214844	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.571	1	19.571	19.071	20.071	0								0	0	0	0.16453	1	5928	5928		56.434	5.2411	1				34552	5643	23909	23994	34980	34980					0.027963450661900424
SAAPRGLKRR	10	Unmodified	_SAAPRGLKRR_					0	0	0			REV__ENST00000268035.10_1_15:99192229-99192595:+|nuORF	REV__ENST00000268035.10_1_15:99192229-99192595:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.2325134277344	3	371.231746	1110.67341	0.81336	0.00030194	1.5939	0.00059172	2.4073	0.00089366	371.23234193547995	14.6	0.52198	14.6	14.239	14.761	0					12	10	2	0	0	0	0.28036	1	3681	3681		55.084	0	1	1727000	+		34553	18087	23910	23995	34981	34981					0.12249856196831388
SAAPRPPRR	9	Unmodified	_SAAPRPPRR_					0	0	0		SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant	SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343017578125	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.012	1	50.012	49.512	50.512	0								0	0	0	0.35507	1	18809	18809		24.519	0	1				34554	22432	23911	23996	34982	34982					0.0754192272564751
SAAPRPPRR	9	Unmodified	_SAAPRPPRR_					0	0	0		SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant	SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341796875	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.314	1	37.314	36.814	37.814	0								0	0	0	0.35899	1	14578	14578		23.523	0	1				34555	22432	23911	23996	34983	34983					0.0754192272564751
SAAPRPPRR	9	Unmodified	_SAAPRPPRR_					0	0	0		SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant	SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53436279296875	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.057	1	51.057	50.557	51.557	0								0	0	0	0.36266	1	20033	20033		29.17	9.1396	1				34556	22432	23911	23996	34984	34984					0.0754192272564751
SAAPRTVAL	9	Unmodified	_SAAPRTVAL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;HLA-DPB1|p.Q193Pfs*17|1|0.18|ENSG00000223865|chr6:33085156-33085157|-/C|frameshift_variant;HLA-DPB1|p.Q193Sfs*35|1|0.35|ENSG00000223865|chr6:33085157-33085157|C/-|frameshift_variant;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2607727050781	2	443.261259	884.507966	0.24893	0.00011034	-1.0863	-0.0004815	-0.83733	-0.00037116	443.26097639218943	26.946	0.1084	26.946	26.879	26.987	0					5	3	2	0	0	0	0.36892	1	8247	8247		44.377	0	1	58444			34557	7860	23912	23997	34985	34985					0.0610920461731439
SAAPRTVAL	9	Unmodified	_SAAPRTVAL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;HLA-DPB1|p.Q193Pfs*17|1|0.18|ENSG00000223865|chr6:33085156-33085157|-/C|frameshift_variant;HLA-DPB1|p.Q193Sfs*35|1|0.35|ENSG00000223865|chr6:33085157-33085157|C/-|frameshift_variant;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2608337402344	2	443.261259	884.507966	-0.49739	-0.00022047	-0.16826	-7.4584E-05	-0.66565	-0.00029506	443.26108745478496	27.163	0.27027	27.163	27.053	27.323	0					12	5	3	0	0	0	0.15163	1	9700	9700		67.494	14.557	1	276370			34558	7860	23912	23997	34986	34986					0.0610920461731439
SAAQPGVAF	9	Unmodified	_SAAQPGVAF_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.21905517578125	2	424.21906	846.423567	0.95149	0.00040364	-1.1079	-0.00046999	-0.15641	-6.6351E-05	424.2185887326866	36.774	0.48151	36.774	36.563	37.044	0					23	13	3	0	0	0	0.41113	1	13847	13847		40.778	5.1599	1	125170			34559	2514	23913	23998	34987	34987					-0.005787461994259502
SAAQPGVAF	9	Unmodified	_SAAQPGVAF_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.2190856933594	2	424.21906	846.423567	-0.022071	-9.363E-06	0.55262	0.00023443	0.53055	0.00022507	424.21934512045704	36.471	0.29625	36.471	36.392	36.688	0					18	14	2	0	0	0	0.39215	1	13045	13045		42.396	11.892	1	42989			34560	2514	23913	23998	34988	34988					-0.005787461994259502
SAARPRRPP	9	Unmodified	_SAARPRRPP_					0	0	0			REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant	REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.843	1	19.843	19.343	20.343	0								0	0	0	0.35507	1	6204	6204		24.519	0	1		+		34561	21389	23914	23999	34989	34989					0.0754192272564751
SAASATIVAAA	11	Unmodified	_SAASATIVAAA_					0	0	0		ENST00000311922.3_1_8:126442809-126443172:+|nuORF	ENST00000311922.3_1_8:126442809-126443172:+|nuORF	ENST00000311922.3_1_8:126442809-126443172:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7553405761719	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.014	1	21.014	20.514	21.514	0								0	0	0	0.29423	1	5719	5719		52.937	1.4089	1				34562	8560	23915	24000	34990	34990					0.02897177172224019
SAASEQHVF	9	Unmodified	_SAASEQHVF_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2298583984375	2	488.230156	974.445759	0.62077	0.00030308	-0.90416	-0.00044144	-0.28339	-0.00013836	488.2296712467822	26.176	0.51073	26.176	25.967	26.477	0					24	10	3	0	0	0	0.02953	1	9347	9347		109.48	54.702	1	1359600			34563	785	23916	24001	34991	34991					-0.04248566521664543
SAASEQHVF	9	Unmodified	_SAASEQHVF_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2299499511719	2	488.230156	974.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.988	1	25.988	25.488	26.488	0								0	0	0	0.095784	1	8302	8302		72.879	32.101	1				34564	785	23916	24001	34992	34992					-0.04248566521664543
SAASEQHVF	9	Unmodified	_SAASEQHVF_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2300720214844	2	488.230156	974.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.116	1	26.116	25.616	26.616	0								0	0	0	0.040385	1	9186	9186		90.601	28.493	1				34565	785	23916	24001	34993	34993					-0.04248566521664543
SAASKVLHQ	9	Unmodified	_SAASKVLHQ_					0	0	0		nc|ENSG00000133962|Q9H7T0-2|CATSPERB;ENSG00000133962|ENST00000256343|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.76409912109375	2	470.764166	939.513779	-0.86325	-0.00040639	0.18817	8.8584E-05	-0.67508	-0.0003178	470.7643536106551	16.752	0.20526	16.752	16.596	16.801	0					7	4	2	0	0	0	0.33044	1	4861	4861		47.657	1.6851	1	818880			34566	3883	23917	24002	34994	34994					0.04160303128992382
SAATHLTSK	9	Unmodified	_SAATHLTSK_					0	0	0		APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant;APPL1|p.R154Efs*6|1|0.31|ENSG00000157500|chr3:57242893-57242893|A/-|frameshift_variant;ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2479248046875	2	458.248349	914.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.984	1	14.984	14.484	15.484	0								0	0	0	0.0026431	1	3338	3338		117.81	59.581	1				34567	189	23918	24003	34995	34995					0.02148310375048368
SAATHLTSK	9	Unmodified	_SAATHLTSK_					0	0	0		APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant;APPL1|p.R154Efs*6|1|0.31|ENSG00000157500|chr3:57242893-57242893|A/-|frameshift_variant;ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2481994628906	2	458.248349	914.482145	0.12368	5.6677E-05	-0.57705	-0.00026443	-0.45337	-0.00020775	458.24800504947376	15.02	0.069697	15.02	14.984	15.054	0					6	2	3	0	0	0	0.14578	1	3293	3293		68.846	31.035	1	62816			34568	189	23918	24003	34996	34996					0.02148310375048368
SAATHLTSK	9	Unmodified	_SAATHLTSK_					0	0	0		APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant;APPL1|p.R154Efs*6|1|0.31|ENSG00000157500|chr3:57242893-57242893|A/-|frameshift_variant;ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2485656738281	2	458.248349	914.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.057	1	15.057	14.557	15.557	0								0	0	0	0.25587	1	3303	3303		42.864	20.904	1				34569	189	23918	24003	34997	34997					0.02148310375048368
SAATHLTSK	9	Unmodified	_SAATHLTSK_					0	0	0		APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant;APPL1|p.R154Efs*6|1|0.31|ENSG00000157500|chr3:57242893-57242893|A/-|frameshift_variant;ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	APPL1|p.L65Kfs*4|1|0.39|ENSG00000157500|chr3:57237529-57237530|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2481994628906	2	458.248349	914.482145	0.87935	0.00040296	-1.3143	-0.00060226	-0.43491	-0.0001993	458.24783939412504	15.166	0.16746	15.166	15.096	15.263	0					6	3	2	0	0	0	0.012936	1	3947	3947		134.77	60.511	1	311800			34570	189	23918	24003	34998	34998					0.02148310375048368
SAATLRTK	8	Unmodified	_SAATLRTK_					0	0	0			REV__ENST00000448264.1_1_1:225888537-225888804:+|nuORF	REV__ENST00000448264.1_1_1:225888537-225888804:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.2554016113281	2	424.253434	846.492316	3.3575	0.0014244	0.64781	0.00027483	4.0053	0.0016993	424.2537886424636	24.032	0.19653	24.032	23.912	24.108	0					10	6	2	0	0	0	0.41701	1	7281	7281		68.787	0	1	139930	+		34571	19295	23919	24004	34999	34999					0.06292918100268707
SAATRPQPK	9	Unmodified	_SAATRPQPK_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2700500488281	2	478.269616	954.524678	-0.29428	-0.00014074	-0.67646	-0.00032353	-0.97074	-0.00046427	478.2692188409618	12.853	0.28246	12.853	12.606	12.888	0					25	16	3	0	0	0	0.50858	1	2533	2533		31.53	1.0262	1	235310	+		34572	17098	23920	24005	35000	35000					0.045597055032772005
SAATRPQPK	9	Unmodified	_SAATRPQPK_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.26824951171875	2	478.269616	954.524678	-0.44459	-0.00021263	-1.7656	-0.00084445	-2.2102	-0.0010571	478.26864442114373	13.047	0.75943	13.047	12.832	13.591	0					42	17	4	0	0	0	0.30841	1	3138	3138		49.536	0	1	2348100	+		34573	17098	23920	24005	35001	35001					0.045597055032772005
SAAVILHSPL	10	Unmodified	_SAAVILHSPL_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.511	1	37.511	37.011	38.011	0								0	0	0	0.4201	1	14677	14677		16.007	3.8001	1				34574	2479	23921	24006	35002	35002					0.0781033333993264
SAAVQKAI	8	Unmodified	_SAAVQKAI_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;GBP1|p.K391Sfs*28|1|0.19|ENSG00000117228|chr1:89056212-89056212|T/-|frameshift_variant;GBP3|p.G430Afs*34|1|0.37|ENSG00000117226|chr1:89010977-89010977|C/-|frameshift_variant;ENSG00000117228|ENST00000370473|GBP1;ENSG00000117226|ENST00000370481|GBP3;GBP3|p.E321D|1|0.3|ENSG00000117226|chr1:89011933-89011933|C/A|missense_variant;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.2374267578125	2	394.237253	786.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.428	1	22.428	21.928	22.928	0								0	0	0	1.7419	1	7284	7284		40.778	9.2484	1				34575	11494	23922	24007	35003	35003					0.05818130697275592
SACGHTAVL	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))GHTAVL_	SAC(1)GHTAVL		SAC(56)GHTAVL		0	1	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2209167480469	2	458.221277	914.428001	-0.67662	-0.00031004	0.15118	6.9275E-05	-0.52544	-0.00024077	458.22130631240094	22.999	0.11702	22.999	22.927	23.044	0					4	2	2	0	0	0	0.25109	1	7872	7872		55.504	16.698	1	104860			34576	4343	23923	24008	35004	35004	182				-0.03263605048164209
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(75)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	390.8526306152344	3	390.518453	1168.53353	0.56363	0.00022011	-1.1627	-0.00045405	-0.59906	-0.00023394	390.85234037396054	17.083	0.14458	17.083	17.039	17.183	0					10	4	4	0	0	0	0.11898	1	4012	4012		75.043	29.071	1	214480			34577	5636	23924	24009	35005	35005	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(99)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.2743530273438	2	585.274041	1168.53353	0.3825	0.00022387	-0.28705	-0.000168	0.095443	5.586E-05	585.274251558986	17.106	0.23505	17.106	17.033	17.268	0					19	7	3	0	0	0	0.04067	1	4004	4004		98.582	31.088	1	669670			34578	5636	23924	24009	35006	35006	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(82)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	390.51837158203125	3	390.518453	1168.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.417	1	17.417	16.917	17.917	0								0	0	0	0.066158	1	4911	4911		81.525	31.491	1				34579	5636	23924	24009	35007	35007	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(94)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.2742309570312	2	585.274041	1168.53353	0.060111	3.5182E-05	-0.26639	-0.00015591	-0.20628	-0.00012073	585.274243276515	17.389	0.74688	17.389	17.29	18.037	0					52	18	4	0	0	0	0.054723	1	4902	4902		93.598	35.368	1	4552500			34580	5636	23924	24009	35008	35008	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(76)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	390.51837158203125	3	390.518453	1168.53353	-1.2252	-0.00047848	0.88047	0.00034384	-0.34476	-0.00013463	390.51884699132853	17.153	0.20731	17.153	17.077	17.284	0					12	6	3	0	0	0	0.11411	1	4234	4234		76.17	34.743	1	481580			34581	5636	23924	24009	35009	35009	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(99)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.5184020996094	3	390.518453	1168.53353	0.30055	0.00011737	-0.74426	-0.00029065	-0.44371	-0.00017328	390.5183196554901	17.371	0.85482	17.371	17.251	18.105	0					44	17	4	0	0	0	0.040209	1	5170	5170		99.013	16.772	1	4195700			34582	5636	23924	24009	35010	35010	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(100)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.2743530273438	2	585.274041	1168.53353	-0.24762	-0.00014492	0.45704	0.0002675	0.20943	0.00012257	585.2744362613175	17.38	0.29884	17.38	17.285	17.583	0					14	6	3	0	0	0	0.035106	1	5149	5149		104.01	43.895	1	864660			34583	5636	23924	24009	35011	35011	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(86)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	390.5183410644531	3	390.518453	1168.53353	-0.15497	-6.052E-05	-0.15556	-6.0748E-05	-0.31053	-0.00012127	390.5184873431028	17.169	0.21073	17.169	17.071	17.281	0					17	6	4	0	0	0	0.076532	1	4216	4216		85.862	19.433	1	448930			34584	5636	23924	24009	35012	35012	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(64)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.2747192382812	2	585.274041	1168.53353	-1.7295	-0.0010123	2.0092	0.0011759	0.27962	0.00016365	585.2755666335445	17.164	0.21191	17.164	17.058	17.27	0					13	6	3	0	0	0	0.18416	1	4208	4208		63.534	15.574	1	518530			34585	5636	23924	24009	35013	35013	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(94)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	390.518310546875	3	390.518453	1168.53353	0.48662	0.00019003	-1.0629	-0.0004151	-0.57632	-0.00022506	390.518173343742	17.371	1.2451	17.371	17.226	18.471	0					48	25	3	0	0	0	0.052435	1	5008	5008		94.409	30.202	1	3736400			34586	5636	23924	24009	35014	35014	232				-0.04399688922558198
SACHKYFEK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))HKYFEK_	SAC(1)HKYFEK		SAC(120)HKYFEK		0	1	0		S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant;ENST00000513778.1_1_4:6695618-6698766:+|nuORF;ENSG00000163993|ENST00000296370|S100P	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	S100P|p.T82M|1|0.3|ENSG00000163993|chr4:6696999-6696999|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.2742309570312	2	585.274041	1168.53353	3.2104	0.001879	-3.6239	-0.002121	-0.41351	-0.00024202	585.272279239599	17.362	0.84966	17.362	17.259	18.109	0					51	17	5	0	0	0	0.020674	1	4983	4983		120.87	58.761	1	4901200			34587	5636	23924	24009	35015	35015	232				-0.04399688922558198
SACKVLSTSCY	11	Unmodified	_SACKVLSTSCY_					0	0	0			REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.8479919433594	3	387.84747	1160.52058	-0.033374	-1.2944E-05	0.95249	0.00036942	0.91912	0.00035648	387.84794545930316	32.784	0.47338	32.784	32.611	33.084	0					16	12	2	0	0	0	0.73562	1	12077	12077		24.232	0	1	131330	+		34588	14665	23925	24010	35016	35016					-0.05325888096967901
SACMRRIL	8	Oxidation (M)	_SACM(Oxidation (M))RRIL_		SACM(1)RRIL		SACM(48)RRIL	0	0	1			REV__nc|ENSG00000167261|Q9H4A9-3|DPEP2	REV__nc|ENSG00000167261|Q9H4A9-3|DPEP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2559509277344	2	483.254597	964.494641	2.4192	0.0011691	0.43545	0.00021043	2.8546	0.0013795	483.25486803775914	20.019	0.51811	20.019	19.859	20.377	0					19	10	4	0	0	0	0.60719	1	6298	6298		47.916	47.916	1	2752600	+		34589	16177	23926	24011	35017	35017		620			0.010973072420938479
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(62)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.73486328125	2	517.734217	1033.45388	1.38	0.00071446	-0.29196	-0.00015116	1.088	0.0005633	517.7343087583906	30.833	0.20795	30.833	30.746	30.954	0					16	8	3	0	0	0	0.19952	1	9857	9857		61.691	27.605	1	118990			34590	3715	23927	24012	35018	35018	161				-0.061507555965590655
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(72)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.734619140625	2	517.734217	1033.45388	1.312	0.00067928	-0.69381	-0.00035921	0.61821	0.00032007	517.7339377042792	31.084	0.34761	31.084	30.955	31.302	0					19	8	3	0	0	0	0.13109	1	11270	11270		72.243	28.126	1	902430			34591	3715	23927	24012	35019	35019	161				-0.061507555965590655
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(40)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7343139648438	2	517.734217	1033.45388	0.066577	3.4469E-05	-0.1703	-8.8172E-05	-0.10373	-5.3703E-05	517.734671457631	30.877	0.18039	30.877	30.775	30.956	0					14	6	3	0	0	0	0.41958	1	10172	10172		40.058	9.5545	1	128970			34592	3715	23927	24012	35020	35020	161				-0.061507555965590655
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(80)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7344360351562	2	517.734217	1033.45388	1.5428	0.00079874	-1.9979	-0.0010344	-0.45513	-0.00023563	517.7337509826008	31.086	0.50344	31.086	30.982	31.485	0					23	11	3	0	0	0	0.095583	1	11700	11700		80.455	32.797	1	572960			34593	3715	23927	24012	35021	35021	161				-0.061507555965590655
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(71)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7348022460938	2	517.734217	1033.45388	1.2293	0.00063647	-0.65829	-0.00034082	0.57106	0.00029566	517.7339516406538	30.883	0.16937	30.883	30.805	30.974	0					8	4	2	0	0	0	0.13726	1	10560	10560		70.816	34.369	1	70000			34594	3715	23927	24012	35022	35022	161				-0.061507555965590655
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(55)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.734619140625	2	517.734217	1033.45388	0.90774	0.00046997	-0.093103	-4.8203E-05	0.81463	0.00042176	517.7340717237031	30.867	0.21158	30.867	30.793	31.005	0					8	5	2	0	0	0	0.25761	1	10570	10570		54.722	22.767	1	183040			34595	3715	23927	24012	35023	35023	161				-0.061507555965590655
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(130)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7343139648438	2	517.734217	1033.45388	0.23634	0.00012236	-0.20516	-0.00010622	0.031177	1.6141E-05	517.7342008767974	31.034	0.31199	31.034	30.929	31.241	0					15	6	3	0	0	0	0.017421	1	11568	11568		126.24	82.126	1	976660			34596	3715	23927	24012	35024	35024	161				-0.061507555965590655
SACSFTFSK	9	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))SFTFSK_	SAC(1)SFTFSK		SAC(130)SFTFSK		0	1	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7342529296875	2	517.734217	1033.45388	1.5662	0.00081089	-1.9303	-0.00099937	-0.36406	-0.00018848	517.7334425069192	31.068	0.50876	31.068	30.962	31.471	0					21	10	4	0	0	0	0.017421	1	11563	11563		126.24	59.813	1	1060900			34597	3715	23927	24012	35025	35025	161				-0.061507555965590655
SACTKPVLE	9	Unmodified	_SACTKPVLE_					0	0	0		ENST00000491177.1_1_1:153599613-153600015:-|nuORF	ENST00000491177.1_1_1:153599613-153600015:-|nuORF	ENST00000491177.1_1_1:153599613-153600015:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.25115966796875	2	474.24696	946.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.78	1	28.78	28.28	29.28	0								0	0	0	0.33029	1	9017	9017		29.17	0.020503	1				34598	10069	23928	24013	35026	35026					0.003987189258850776
SACYGTPLGL	10	Carbamidomethyl (C)	_SAC(Carbamidomethyl (C))YGTPLGL_	SAC(1)YGTPLGL		SAC(55)YGTPLGL		0	1	0			REV__ENST00000514442.5_1_5:149772206-149772383:+|nuORF	REV__ENST00000514442.5_1_5:149772206-149772383:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.83673095703125	3	346.83567	1037.48518	1.4614	0.00050685	0.97303	0.00033748	2.4344	0.00084433	346.8362037872342	26.469	0.31915	26.469	26.309	26.628	0					16	6	4	0	0	0	0.41384	1	9490	9490		54.722	6.7628	1	1353800	+		34599	19902	23929	24014	35027	35027	700				-0.03206182562462345
SADDRCKVL	9	Unmodified	_SADDRCKVL_					0	0	0		nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7538146972656	2	503.752941	1005.49133	0.60681	0.00030568	0.53143	0.00026771	1.1382	0.00057339	503.7531168181835	22.971	0.23888	22.971	22.879	23.118	0					14	8	2	0	0	0	0.38666	1	6587	6587		42.864	9.3487	1	85765			34600	2676	23930	24015	35028	35028					-0.011196643309290266
SADDRCKVL	9	Unmodified	_SADDRCKVL_					0	0	0		nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7527160644531	2	503.752941	1005.49133	0.75809	0.00038189	-1.1046	-0.00055644	-0.3465	-0.00017455	503.7525853239736	23.317	0.52675	23.317	23.049	23.576	0					31	12	4	0	0	0	0.095583	1	7692	7692		80.455	18.347	1	918410			34601	2676	23930	24015	35029	35029					-0.011196643309290266
SADDRCKVL	9	Unmodified	_SADDRCKVL_					0	0	0		nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.75238037109375	2	503.752941	1005.49133	-0.85381	-0.00043011	-0.05629	-2.8356E-05	-0.9101	-0.00045847	503.7531691294815	23.031	0.24911	23.031	22.938	23.187	0					15	8	3	0	0	0	0.42902	1	6872	6872		39.253	11.371	1	203850			34602	2676	23930	24015	35030	35030					-0.011196643309290266
SADDRCKVL	9	Unmodified	_SADDRCKVL_					0	0	0		nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7530212402344	2	503.752941	1005.49133	1.0171	0.00051235	-2.5143	-0.0012666	-1.4973	-0.00075425	503.75227005387507	23.204	0.31748	23.204	23.095	23.412	0					11	6	3	0	0	0	0.24334	1	7976	7976		56.434	15.861	1	1077900			34603	2676	23930	24015	35031	35031					-0.011196643309290266
SADDRCKVL	9	Unmodified	_SADDRCKVL_					0	0	0		nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	nc|ENSG00000111605|Q16630-3|CPSF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7525329589844	2	503.752941	1005.49133	0.12433	6.2631E-05	-0.61169	-0.00030814	-0.48736	-0.00024551	503.7525872781206	23.081	0.40413	23.081	22.952	23.356	0					19	9	3	0	0	0	0.42902	1	6998	6998		39.253	1.4413	1	117150			34604	2676	23930	24015	35032	35032					-0.011196643309290266
SADKKAQGP	9	Unmodified	_SADKKAQGP_					0	0	0		PIN4|p.G104Wfs*3|1|0.12|ENSG00000102309|chrX:72196901-72196902|-/T|frameshift_variant;ENST00000373662.3_1_X:71406282-71416775:+|nuORF;ENSG00000102309|ENST00000373669|PIN4;nc|ENSG00000102309|Q9Y237-3|PIN4;nc|ENSG00000102309|Q9Y237-2|PIN4	PIN4|p.G104Wfs*3|1|0.12|ENSG00000102309|chrX:72196901-72196902|-/T|frameshift_variant	PIN4|p.G104Wfs*3|1|0.12|ENSG00000102309|chrX:72196901-72196902|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2403564453125	2	451.240524	900.466495	-2.6095	-0.0011775	2.2866	0.0010318	-0.32293	-0.00014572	451.24150660871703	23.054	0.18347	23.054	22.939	23.123	0					7	4	2	0	0	0	0.35021	1	6950	6950		45.972	0.020292	1	60004			34605	2164	23931	24016	35033	35033					0.012280238579933211
SADKTVRVY	9	Unmodified	_SADKTVRVY_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7830200195312	2	519.782556	1037.55056	1.4424	0.00074972	-0.67319	-0.00034991	0.76918	0.00039981	519.7823023104166	21.031	0.12287	21.031	20.951	21.074	0					6	3	2	0	0	0	0.19605	1	5736	5736		62.107	17.73	1	104250			34606	2262	23932	24017	35034	35034					0.0332855495489639
SADKTVRVY	9	Unmodified	_SADKTVRVY_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7827758789062	2	519.782556	1037.55056	1.4077	0.0007317	-0.84305	-0.0004382	0.56466	0.0002935	519.7822247365302	21.353	0.31572	21.353	21.264	21.579	0					13	7	3	0	0	0	0.02953	1	6785	6785		109.48	50.696	1	877110			34607	2262	23932	24017	35035	35035					0.0332855495489639
SADKTVRVY	9	Unmodified	_SADKTVRVY_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7825927734375	2	519.782556	1037.55056	4.9234	0.0025591	-3.0784	-0.0016001	1.845	0.00095897	519.7804294441142	21.074	0.10849	21.074	20.973	21.082	0					5	3	2	0	0	0	0.40353	1	5988	5988		41.427	19.467	1	34054			34608	2262	23932	24017	35036	35036					0.0332855495489639
SADKTVRVY	9	Unmodified	_SADKTVRVY_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.782958984375	2	519.782556	1037.55056	1.1177	0.00058097	0.1365	7.0948E-05	1.2542	0.00065192	519.782459913356	21.276	0.2137	21.276	21.176	21.39	0					9	4	3	0	0	0	0.035106	1	7023	7023		104.01	39.806	1	284000			34609	2262	23932	24017	35037	35037					0.0332855495489639
SADKTVRVY	9	Unmodified	_SADKTVRVY_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7838745117188	2	519.782556	1037.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.152	1	21.152	20.652	21.652	0								0	0	0	0.18645	1	6080	6080		52.937	23.787	1				34610	2262	23932	24017	35038	35038					0.0332855495489639
SADKTVRVY	9	Unmodified	_SADKTVRVY_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7828979492188	2	519.782556	1037.55056	0.31399	0.00016321	0.48841	0.00025387	0.8024	0.00041707	519.7826464340034	21.247	0.2617	21.247	21.142	21.404	0					12	5	4	0	0	0	0.07136	1	6902	6902		87.696	38.255	1	588510			34611	2262	23932	24017	35039	35039					0.0332855495489639
SADLESSKR	9	Unmodified	_SADLESSKR_					0	0	0			REV__nc|ENSG00000075413|P27448-8|MARK3	REV__nc|ENSG00000075413|P27448-8|MARK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.75531005859375	2	496.753995	991.493438	0.7611	0.00037808	0.63707	0.00031647	1.3982	0.00069454	496.75416455364933	21.567	0.318	21.567	21.458	21.776	0					14	6	3	0	0	0	0.28897	1	7183	7183		51.193	6.8155	1	1850500	+		34612	13233	23933	24018	35040	35040					-0.0026491232147236587
SADNLNAKKLL	11	Unmodified	_SADNLNAKKLL_					0	0	0		nc|ENSG00000149657|Q9BX40-3|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-3|LSM14B	nc|ENSG00000149657|Q9BX40-3|LSM14B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.2313232421875	3	396.231189	1185.67174	-0.26164	-0.00010367	0.31283	0.00012395	0.051196	2.0285E-05	396.2312843847103	16.488	0.31223	16.488	16.35	16.662	0					22	7	5	0	0	0	0.52595	1	4465	4465		42.338	2.2799	1	2281700			34613	4902	23934	24019	35041	35041					0.08632757597570162
SADSASLAK	9	Unmodified	_SADSASLAK_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2195739746094	2	425.219257	848.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.777	1	16.777	16.277	17.277	0								0	0	0	0.17378	1	3886	3886		54.776	0	1				34614	3189	23935	24020	35042	35042					-0.006313712702421981
SADSASLAK	9	Unmodified	_SADSASLAK_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.2189025878906	2	425.219257	848.423961	0.32415	0.00013783	-0.68458	-0.0002911	-0.36044	-0.00015326	425.21892720275235	17.08	0.18163	17.08	16.991	17.172	0					7	4	2	0	0	0	0.011389	1	4746	4746		138.06	28.584	1	261520			34615	3189	23935	24020	35043	35043					-0.006313712702421981
SADSKKPA	8	Unmodified	_SADSKKPA_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.2164001464844	2	402.216517	802.418482	0.05232	2.1044E-05	-0.33828	-0.00013606	-0.28596	-0.00011502	402.21637730427716	15.383	0.45353	15.383	15.147	15.6	0					12	9	2	0	0	0	0.77246	1	4166	4166		24.203	4.8428	1	149760			34616	5443	23936	24021	35044	35044					0.009369499379431545
SADTAVRSSL	10	Unmodified	_SADTAVRSSL_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7617492675781	2	503.76182	1005.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.777	1	14.777	14.277	15.277	0								0	0	0	0.2486	1	3906	3906		37.812	0	1		+		34617	14625	23937	24022	35045	35045					0.006553741955826808
SADTHGTDAL	10	Unmodified	_SADTHGTDAL_					0	0	0		ENST00000531976.1_1_11:1490730-1491405:-|nuORF	ENST00000531976.1_1_11:1490730-1491405:-|nuORF	ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2223205566406	2	494.222528	986.430503	-0.06727	-3.3246E-05	-0.091638	-4.529E-05	-0.15891	-7.8536E-05	494.22248434079114	18.972	0.16497	18.972	18.896	19.061	0					12	5	3	0	0	0	0.47859	1	4821	4821		47.657	6.2307	1	118670			34618	10444	23938	24023	35046	35046					-0.06325478109533833
SAEEGYRTY	9	Unmodified	_SAEEGYRTY_					0	0	0		nc|ENSG00000110455|Q96QU6-2|ACCS;ENST00000526577.5_1_11:44088110-44095068:+|nuORF;ENSG00000110455|ENST00000263776|ACCS	nc|ENSG00000110455|Q96QU6-2|ACCS	nc|ENSG00000110455|Q96QU6-2|ACCS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2388916015625	2	538.238178	1074.4618	-0.26824	-0.00014438	2.1527	0.0011587	1.8845	0.0010143	538.2391770010416	23.771	0.13157	23.771	23.701	23.833	0					6	4	2	0	0	0	0.36135	1	7196	7196		45.022	16.768	1	79117			34619	2628	23939	24024	35047	35047					-0.07244905075413044
SAEEKLMKVA	10	Unmodified	_SAEEKLMKVA_					0	0	0			REV__nc|ENSG00000030304|O15146-3|MUSK	REV__nc|ENSG00000030304|O15146-3|MUSK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.2985229492188	2	553.299724	1104.5849	-1.2066	-0.0006676	-0.79902	-0.0004421	-2.0056	-0.0011097	553.2993254466141	23.19	0.23316	23.19	23.064	23.297	0					13	5	3	0	0	0	0.34667	1	7047	7047		62.107	0	1	558450	+		34620	12965	23940	24025	35048	35048					0.0367863505148307
SAEKSVAKK	9	Unmodified	_SAEKSVAKK_					0	0	0		nc|ENSG00000111704|Q9H9S0-2|NANOG;ENSG00000111704|ENST00000229307|NANOG	nc|ENSG00000111704|Q9H9S0-2|NANOG	nc|ENSG00000111704|Q9H9S0-2|NANOG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2797546386719	2	474.279649	946.544745	0.28398	0.00013469	-0.65903	-0.00031257	-0.37505	-0.00017788	474.2792911689327	14.781	0.97988	14.781	14.104	15.084	0					40	24	3	0	0	0	0.42902	1	3397	3397		39.253	2.0937	1	536970			34621	2688	23941	24026	35049	35049					0.06933456443232444
SAEPLPSGLG	10	Unmodified	_SAEPLPSGLG_					0	0	0			REV__ENST00000550376.5_1_12:108154376-108155011:-|nuORF	REV__ENST00000550376.5_1_12:108154376-108155011:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2425231933594	2	464.242732	926.470912	-0.73151	-0.0003396	0.60447	0.00028062	-0.12705	-5.8981E-05	464.2430495471557	26.257	0.14678	26.257	26.177	26.323	0					6	4	2	0	0	0	0.58896	1	8236	8236		35.618	5.1146	1	46590	+		34622	20195	23942	24027	35050	35050					0.0047348828089752715
SAEQASDASY	10	Unmodified	_SAEQASDASY_					0	0	0			REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7113647460938	2	514.711993	1027.40943	-1.5917	-0.00081929	0.42142	0.00021691	-1.1703	-0.00060238	514.712126684447	29.204	0.20747	29.204	29.13	29.337	0					9	5	2	0	0	0	0.59277	1	9781	9781		35.152	2.3396	1	150250	+		34623	15500	23943	24028	35051	35051					-0.10317488209034309
SAEQHQRTL	9	Unmodified	_SAEQHQRTL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;ENST00000393321.2_3_2:109102933-109106471:+|nuORF	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2733764648438	2	535.272887	1068.53122	-0.60917	-0.00032607	2.3626	0.0012647	1.7535	0.00093858	535.2741477024492	15.686	0.078476	15.686	15.646	15.725	0					5	3	2	0	0	0	0.37744	1	3620	3620		43.651	3.5926	1	87700			34624	4042	23944	24029	35052	35052					-0.0003040133599370165
SAEQHQRTL	9	Unmodified	_SAEQHQRTL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;ENST00000393321.2_3_2:109102933-109106471:+|nuORF	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2732543945312	2	535.272887	1068.53122	1.8021	0.00096462	-1.1914	-0.0006377	0.61077	0.00032693	535.2722185521397	15.922	0.2112	15.922	15.818	16.03	0					6	4	2	0	0	0	0.30257	1	4459	4459		50.034	4.0816	1	1030300			34625	4042	23944	24029	35053	35053					-0.0003040133599370165
SAERVRVQRS	10	Unmodified	_SAERVRVQRS_					0	0	0			REV__ENST00000371222.3_1_1:59248947-59249013:-|nuORF	REV__ENST00000371222.3_1_1:59248947-59249013:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	396.55987548828125	3	396.558299	1186.65307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.29	1	22.29	21.79	22.79	0								0	0	0	0.36846	1	6538	6538		40.058	6.1365	1		+		34626	18652	23945	24030	35054	35054					0.06720640746380013
SAESHLSY	8	Unmodified	_SAESHLSY_					0	0	0		nc|ENSG00000146166|Q5TDP6-3|LGSN	nc|ENSG00000146166|Q5TDP6-3|LGSN	nc|ENSG00000146166|Q5TDP6-3|LGSN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.20391845703125	2	447.203607	892.392661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.084	1	26.084	25.584	26.584	0								0	0	0	1.7419	1	8953	8953		42.474	8.9589	1				34627	11573	23946	24031	35055	35055					-0.05783944304334909
SAETLGPGAL	10	Unmodified	_SAETLGPGAL_					0	0	0		ARHGAP23|p.A364T|1|0.33|ENSG00000275832|chr17:38466773-38466773|G/A|missense_variant	ARHGAP23|p.A364T|1|0.33|ENSG00000275832|chr17:38466773-38466773|G/A|missense_variant	ARHGAP23|p.A364T|1|0.33|ENSG00000275832|chr17:38466773-38466773|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2427062988281	2	458.242732	914.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.536	1	40.536	40.036	41.036	0								0	0	0	0.3639	1	15975	15975		40.778	0.20554	1				34628	203	23947	24032	35056	35056					0.010254882809135779
SAETVAIQP	9	Unmodified	_SAETVAIQP_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000197302|ENST00000316491|KRBOX5	ENSG00000197302|ENST00000316491|KRBOX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.24224853515625	2	458.242732	914.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.556	1	40.556	40.056	41.056	0								0	0	0	0.3304	1	15983	15983		29.15	0	1				34629	7446	23948	24033	35057	35057					0.010254882808908405
SAETVKSRAPG	11	Unmodified	_SAETVKSRAPG_					0	0	0		ENST00000586942.5_1_17:74553872-74554508:+|nuORF	ENST00000586942.5_1_17:74553872-74554508:+|nuORF	ENST00000586942.5_1_17:74553872-74554508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.1998596191406	3	368.199889	1101.57784	0.76267	0.00028082	-0.36373	-0.00013393	0.39894	0.00014689	368.19971440393937	27.296	0.22174	27.296	27.169	27.39	0					11	5	4	0	0	0	0.78104	1	9510	9510		12.433	0	1	1093700			34630	10908	23949	24034	35058	35058					0.031110384952853565
SAEWLGVLK	9	Unmodified	_SAEWLGVLK_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7852783203125	2	501.784567	1001.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.058	1	45.058	44.558	45.558	0								0	0	0	0.24544	1	18050	18050		44.377	3.8046	1				34631	7027	23950	24035	35059	35059					0.05386644448617517
SAFDRILSSK	10	Unmodified	_SAFDRILSSK_					0	0	0		ENST00000466134.5_1_21:45735979-45739299:+|nuORF;PFKL|p.P704Qfs*6|1|0.29|ENSG00000141959|chr21:44326177-44326177|C/-|frameshift_variant;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000466134.5_1_21:45735979-45739299:+|nuORF	ENST00000466134.5_1_21:45735979-45739299:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	375.20849609375	3	375.208384	1122.60332	0.79772	0.00029931	-1.2474	-0.00046803	-0.44968	-0.00016872	375.20805564036766	34.691	0.2098	34.691	34.612	34.822	0					13	5	3	0	0	0	0.41055	1	12942	12942		55.084	17.272	1	222670			34632	4477	23951	24036	35060	35060					0.04692513017721467
SAFDRILSSK	10	Unmodified	_SAFDRILSSK_					0	0	0		ENST00000466134.5_1_21:45735979-45739299:+|nuORF;PFKL|p.P704Qfs*6|1|0.29|ENSG00000141959|chr21:44326177-44326177|C/-|frameshift_variant;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000466134.5_1_21:45735979-45739299:+|nuORF	ENST00000466134.5_1_21:45735979-45739299:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.2083435058594	3	375.208384	1122.60332	-0.36837	-0.00013822	0.32143	0.0001206	-0.046941	-1.7613E-05	375.2085358508986	34.643	0.26191	34.643	34.538	34.8	0					11	5	3	0	0	0	0.5155	1	13310	13310		43.651	4.8972	1	211460			34633	4477	23951	24036	35061	35061					0.04692513017721467
SAFGGSLPAK	10	Unmodified	_SAFGGSLPAK_					0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.75335693359375	2	467.753267	933.491981	0.040642	1.901E-05	-0.41397	-0.00019364	-0.37333	-0.00017462	467.75320780191225	28.098	0.23965	28.098	27.988	28.228	0					15	8	3	0	0	0	0.35046	1	8730	8730		61.691	17.314	1	101270			34634	4804	23952	24037	35062	35062					0.022574983804247495
SAFGGSLPAK	10	Unmodified	_SAFGGSLPAK_					0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.75286865234375	2	467.753267	933.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.366	1	28.366	27.866	28.866	0								0	0	0	0.014942	1	10384	10384		112.11	37.852	1				34635	4804	23952	24037	35063	35063					0.022574983804247495
SAFGGSLPAK	10	Unmodified	_SAFGGSLPAK_					0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7529296875	2	467.753267	933.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.196	1	28.196	27.696	28.696	0								0	0	0	0.3185	1	9326	9326		47.96	5.5634	1				34636	4804	23952	24037	35064	35064					0.022574983804247495
SAFGGSLPAK	10	Unmodified	_SAFGGSLPAK_					0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7528991699219	2	467.753267	933.491981	-0.51032	-0.0002387	-0.19328	-9.0409E-05	-0.7036	-0.00032911	467.75318010804597	28.319	0.31738	28.319	28.16	28.478	0					13	6	3	0	0	0	0.1998	1	10233	10233		79.489	29.953	1	716320			34637	4804	23952	24037	35065	35065					0.022574983804247495
SAFGNILSCK	10	Carbamidomethyl (C)	_SAFGNILSC(Carbamidomethyl (C))K_	SAFGNILSC(1)K		SAFGNILSC(78)K		0	1	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000186288|ENST00000373519|PABPC1L2A;ENSG00000184388|ENST00000373521|PABPC1L2B;PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant;PABPC4|p.V294*|1|0.12|ENSG00000090621|chr1:39567843-39567843|C/-|frameshift_variant;nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7762451171875	2	548.776416	1095.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.318	1	39.318	38.818	39.818	0								0	0	0	0.1116	1	14965	14965		77.533	12.068	1				34638	1840;1456	23953	24038	35066	35066	55				-0.0056680477980535215
SAFGQAFSK	9	Unmodified	_SAFGQAFSK_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.73748779296875	2	471.737617	941.460681	-0.016566	-7.815E-06	-0.42921	-0.00020248	-0.44578	-0.00021029	471.7373976005818	30.543	0.28135	30.543	30.449	30.73	0					27	11	3	0	0	0	0.17062	1	9737	9737		65.157	24.379	1	259370			34639	3606	23954	24039	35067	35067					-0.012390746536766528
SAFGQAFSK	9	Unmodified	_SAFGQAFSK_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7376403808594	2	471.737617	941.460681	0.19069	8.9957E-05	-0.53922	-0.00025437	-0.34852	-0.00016441	471.73735480996817	30.796	0.59925	30.796	30.703	31.302	0					26	14	2	0	0	0	0.024312	1	11151	11151		114.86	51.324	1	1716100			34640	3606	23954	24039	35068	35068					-0.012390746536766528
SAFGQAFSK	9	Unmodified	_SAFGQAFSK_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7374572753906	2	471.737617	941.460681	0.58919	0.00027795	-0.82466	-0.00038902	-0.23547	-0.00011108	471.7372131524561	30.849	0.62356	30.849	30.725	31.348	0					32	14	3	0	0	0	0.0093724	1	11567	11567		142.36	57.446	1	2513600			34641	3606	23954	24039	35069	35069					-0.012390746536766528
SAFGQAFSK	9	Unmodified	_SAFGQAFSK_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7376403808594	2	471.737617	941.460681	-0.56646	-0.00026722	-0.0030313	-1.43E-06	-0.56949	-0.00026865	471.7376556911942	30.622	0.45468	30.622	30.504	30.958	0					22	12	3	0	0	0	0.26699	1	10428	10428		53.597	20.784	1	362710			34642	3606	23954	24039	35070	35070					-0.012390746536766528
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.27972412109375	2	482.279118	962.543683	0.046331	2.2345E-05	-0.30385	-0.00014654	-0.25752	-0.0001242	482.2790116944051	37.746	0.31991	37.746	37.652	37.971	0					42	18	3	0	0	0	0.082776	1	12335	12335		83.647	16.153	1	644670			34643	6716	23955	24040	35071	35071					0.06091242074330694
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2793884277344	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.842	1	37.842	37.342	38.342	0								0	0	0	0.14961	1	12780	12780		59.931	17.067	1				34644	6716	23955	24040	35072	35072					0.06091242074330694
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.279296875	2	482.279118	962.543683	-0.10281	-4.9585E-05	0.17321	8.3535E-05	0.070395	3.395E-05	482.27915562340496	38.047	0.33086	38.047	37.908	38.238	0					24	11	3	0	0	0	0.021015	1	14896	14896		120.31	21.677	1	386240			34645	6716	23955	24040	35073	35073					0.06091242074330694
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.27972412109375	2	482.279118	962.543683	0.69001	0.00033278	-0.99956	-0.00048207	-0.30955	-0.00014929	482.278598113507	38.034	0.57787	38.034	37.902	38.48	0					56	20	5	0	0	0	0.029571	1	14878	14878		109.44	10.064	1	5293500			34646	6716	23955	24040	35074	35074					0.06091242074330694
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.279052734375	2	482.279118	962.543683	0.16647	8.0284E-05	-0.090841	-4.381E-05	0.075627	3.6473E-05	482.27906314074653	37.771	0.29442	37.771	37.693	37.987	0					34	13	3	0	0	0	0.27123	1	13504	13504		53.089	10.225	1	556320			34647	6716	23955	24040	35075	35075					0.06091242074330694
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.279541015625	2	482.279118	962.543683	-0.28205	-0.00013603	-0.15374	-7.4144E-05	-0.43579	-0.00021017	482.27901678078547	37.785	0.38659	37.785	37.685	38.071	0					46	18	4	0	0	0	0.076532	1	13509	13509		85.862	9.0877	1	1005500			34648	6716	23955	24040	35076	35076					0.06091242074330694
SAFKADPKISK	11	Unmodified	_SAFKADPKISK_					0	0	0		ENST00000540344.5_1_12:498593-542579:+|nuORF;nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77	ENST00000540344.5_1_12:498593-542579:+|nuORF	ENST00000540344.5_1_12:498593-542579:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.340087890625	2	596.340238	1190.66592	1.4608	0.00087111	-1.024	-0.00061068	0.43672	0.00026043	596.3394624748698	20.238	0.16843	20.238	20.128	20.297	0					6	3	2	0	0	0	0.054579	1	6538	6538		102.95	34.109	1	186530			34649	3179	23956	24041	35077	35077					0.07821659085880128
SAFLCGVMK	9	Unmodified	_SAFLCGVMK_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.24102783203125	2	478.240624	954.466695	-0.11667	-5.5798E-05	-0.15139	-7.2401E-05	-0.26807	-0.0001282	478.2407950118997	40.764	0.18924	40.764	40.676	40.866	0					11	6	2	0	0	0	0.17854	1	16061	16061		64.207	27.048	1	53069			34650	3449	23957	24042	35078	35078					-0.01236015737993057
SAFLCGVMK	9	Unmodified	_SAFLCGVMK_					0	0	0		ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	ENSG00000125944|ENST00000302271|HNRNPR	ENSG00000125944|ENST00000302271|HNRNPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.23272705078125	2	478.240624	954.466695	-0.65221	-0.00031191	0.0025156	1.2031E-06	-0.64969	-0.00031071	478.24074300761407	40.679	0.41274	40.679	40.59	41.002	0					9	7	2	0	0	0	0.54267	1	16266	16266		27.882	6.9353	1	169030			34651	3449	23957	24042	35079	35079					-0.01236015737993057
SAFLISRLT	9	Unmodified	_SAFLISRLT_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.53432	1006.58113	0.24141	8.1243E-05	-0.53319	-0.00017944	-0.29177	-9.8192E-05	336.53417146846755	36.752	0.56769	36.752	36.666	37.234	0					44	30	2	0	0	0	0.61124	1	12036	12036		17.468	4.014	1	82399			34652	10078	23958	24043	35080	35080					0.0781033333993264
SAFLVLVFL	9	Unmodified	_SAFLVLVFL_					0	0	0		ENSG00000128039|ENST00000264228|SRD5A3	ENSG00000128039|ENST00000264228|SRD5A3	ENSG00000128039|ENST00000264228|SRD5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.8776550292969	3	336.875795	1007.60555	3.0146	0.0010156	2.621	0.00088296	5.6357	0.0018985	336.8766796728949	17.064	0.26985	17.064	16.957	17.226	0					8	5	2	0	0	0	0.61124	1	4867	4867		12.812	2.5465	1	744320			34653	3527	23959	24044	35081	35081					0.10205593493469678
SAFQAPAVKK	10	Unmodified	_SAFQAPAVKK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.5378723144531	3	349.537953	1045.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.645	1	22.645	22.145	23.145	0								0	0	0	0.32313	1	7694	7694		47.228	23.85	1				34654	1402	23960	24045	35082	35082					0.07105735714230832
SAFQAPAVKK	10	Unmodified	_SAFQAPAVKK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.5379638671875	3	349.537953	1045.59203	-0.04315	-1.5082E-05	0.013524	4.7273E-06	-0.029625	-1.0355E-05	349.5379837466699	22.597	0.46575	22.597	22.239	22.705	0					20	9	3	0	0	0	0.41055	1	7552	7552		55.084	24.766	1	445420			34655	1402	23960	24045	35083	35083					0.07105735714230832
SAFQQMWISK	10	Unmodified	_SAFQQMWISK_					0	0	0		ENST00000491397.1_1_1:104113104-104113248:+|nuORF	ENST00000491397.1_1_1:104113104-104113248:+|nuORF	ENST00000491397.1_1_1:104113104-104113248:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	613.3056640625	2	613.305341	1224.59613	0.96194	0.00058996	-0.54613	-0.00033495	0.41581	0.00025502	613.3051366632021	42.403	0.10228	42.403	42.363	42.465	0					9	5	2	0	0	0	0.46989	1	16649	16649		48.602	0	1	46503			34656	10071	23961	24046	35084	35084					-0.007185428543607486
SAFSTSISK	9	Unmodified	_SAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2427062988281	2	464.242732	926.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.242	1	26.242	25.742	26.742	0								0	0	0	0.084509	1	7948	7948		76.17	24.834	1				34657	6757	23962	24047	35085	35085					0.0047348828089752715
SAFSTSISK	9	Unmodified	_SAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2422790527344	2	464.242732	926.470912	-0.141	-6.5459E-05	-0.58624	-0.00027216	-0.72724	-0.00033762	464.24234417524275	26.535	0.31842	26.535	26.326	26.644	0					14	6	4	0	0	0	0.020674	1	9496	9496		120.87	54.439	1	1025300			34658	6757	23962	24047	35086	35086					0.0047348828089752715
SAFSTSISK	9	Unmodified	_SAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2430114746094	2	464.242732	926.470912	-0.15566	-7.2264E-05	0.77217	0.00035847	0.61651	0.00028621	464.2431770905026	26.328	0.15374	26.328	26.259	26.413	0					6	3	2	0	0	0	0.34452	1	8463	8463		46.457	14.927	1	137350			34659	6757	23962	24047	35087	35087					0.0047348828089752715
SAFSTSISK	9	Unmodified	_SAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2423095703125	2	464.242732	926.470912	-0.42421	-0.00019694	-0.10337	-4.7987E-05	-0.52758	-0.00024492	464.24265835628523	26.344	0.23215	26.344	26.246	26.478	0					8	5	2	0	0	0	0.18416	1	8456	8456		63.534	14.092	1	169340			34660	6757	23962	24047	35088	35088					0.0047348828089752715
SAFSTSISK	9	Unmodified	_SAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2424621582031	2	464.242732	926.470912	-0.48284	-0.00022415	-0.19274	-8.9479E-05	-0.67558	-0.00031363	464.2425872442708	26.46	0.32185	26.46	26.349	26.671	0					12	6	2	0	0	0	0.070005	1	9342	9342		88.177	19.39	1	2093000			34661	6757	23962	24047	35089	35089					0.0047348828089752715
SAFSVAVTK	9	Unmodified	_SAFSVAVTK_					0	0	0		ENSG00000145861|ENST00000652664|C1QTNF2	ENSG00000145861|ENST00000652664|C1QTNF2	ENSG00000145861|ENST00000652664|C1QTNF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2552795410156	2	455.255643	908.496732	-0.13496	-6.1441E-05	-0.60883	-0.00027717	-0.74379	-0.00033862	455.2554018953961	30.154	0.1461	30.154	30.059	30.205	0					6	3	2	0	0	0	0.12834	1	11253	11253		72.879	24.964	1	90707			34662	4697	23963	24048	35090	35090					0.038823825231816045
SAFTGQQGY	9	Unmodified	_SAFTGQQGY_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.71710205078125	2	479.716882	957.41921	-1.4065	-0.00067472	0.99207	0.00047591	-0.41443	-0.00019881	479.7173363819148	31.687	0.23203	31.687	31.611	31.843	0					20	9	3	0	0	0	0.085655	1	10513	10513		82.75	16.321	1	199740			34663	3877	23964	24049	35091	35091					-0.061202554129977216
SAFVRILTT	9	Unmodified	_SAFVRILTT_					0	0	0		tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.53432	1006.58113	0.24131	8.1208E-05	-0.40707	-0.00013699	-0.16576	-5.5784E-05	336.53415525257486	24.142	0.7808	24.142	23.615	24.396	0					44	26	2	0	0	0	0.5879	1	7055	7055		23.523	0	1	142070			34664	22790	23965	24050	35092	35092					0.0781033333993264
SAFVRILTT	9	Unmodified	_SAFVRILTT_					0	0	0		tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5344543457031	3	336.53432	1006.58113	0.63057	0.00021221	-0.81241	-0.0002734	-0.18184	-6.1195E-05	336.5340816499559	52.799	0.13342	52.799	52.7	52.834	0					13	8	2	0	0	0	0.61124	1	15643	15643		13.454	4.7603	1	39305			34665	22790	23965	24050	35093	35093					0.0781033333993264
SAFWLASRK	9	Unmodified	_SAFWLASRK_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3;ENST00000491251.1_1_22:30418516-30421787:+|nuORF	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2970581054688	2	533.295633	1064.57671	0.28941	0.00015434	0.84026	0.00044811	1.1297	0.00060245	533.2960645585683	32.662	0.1346	32.662	32.582	32.717	0					5	3	2	0	0	0	0.47473	1	12430	12430		35.152	8.3559	1	56115			34666	2005	23966	24051	35094	35094					0.04700868917029766
SAFYVPFAK	9	Unmodified	_SAFYVPFAK_					0	0	0		ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	ENSG00000118961|ENST00000237822|LDAH	ENSG00000118961|ENST00000237822|LDAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2737426757812	2	515.273835	1028.53312	1.4997	0.00077275	-0.8757	-0.00045122	0.624	0.00032153	515.7750600365941	44.067	0.16893	44.067	43.981	44.15	0					14	7	2	0	0	0	0.3269	1	17650	17650		40.778	7.9657	1	99181			34667	3089	23967	24052	35095	35095					0.01999259419903865
SAGAGAGETLK	11	Unmodified	_SAGAGAGETLK_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;ENST00000578955.1_1_18:19057140-19088617:+|nuORF	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.25048828125	2	481.251089	960.487624	0.087748	4.2229E-05	-0.92566	-0.00044548	-0.83791	-0.00040325	481.250485023654	15.165	0.097239	15.165	15.107	15.204	0					5	3	2	0	0	0	0.62108	1	3251	3251		35.152	1.2304	1	71892			34668	4446	23968	24053	35096	35096					0.005799891668630153
SAGARPPPARG	11	Unmodified	_SAGARPPPARG_					0	0	0			REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1	REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7872924804688	2	518.785964	1035.55738	0.26465	0.0001373	2.6553	0.0013775	2.92	0.0015148	518.7873468549698	34.948	0.31474	34.948	34.83	35.145	0					10	6	2	0	0	0	0.63225	1	13505	13505		18.262	0	1	213810	+		34669	20473	23969	24054	35097	35097					0.041019126261289784
SAGCWPLKK	9	Unmodified	_SAGCWPLKK_					0	0	0		ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2665710449219	2	495.265487	988.516422	2.8353	0.0014042	-0.69268	-0.00034306	2.1427	0.0010612	495.265100258352	24.105	0.56187	24.105	23.7	24.262	0					22	11	4	0	0	0	0.19605	1	8254	8254		62.107	4.2961	1	3182000			34670	9410	23970	24055	35098	35098					0.02170435262303272
SAGDAIRAI	9	Unmodified	_SAGDAIRAI_					0	0	0		ENST00000566963.1_1_16:77225382-77227709:+|nuORF;ENSG00000103111|ENST00000248248|MON1B	ENST00000566963.1_1_16:77225382-77227709:+|nuORF	ENST00000566963.1_1_16:77225382-77227709:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.24310302734375	2	437.243067	872.47158	-0.63154	-0.00027614	-0.055846	-2.4418E-05	-0.68739	-0.00030056	437.24311933276323	21.212	0.50447	21.212	20.944	21.448	0					22	11	4	0	0	0	0.16002	1	6073	6073		66.429	0	1	888380			34671	2214	23971	24056	35099	35099					0.03024327720618203
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7348327636719	2	437.735074	873.455596	0.24961	0.00010926	-0.15292	-6.6938E-05	0.096691	4.2325E-05	437.7349803778582	17.144	0.17457	17.144	17.073	17.248	0					8	5	2	0	0	0	0.015496	1	4041	4041		129.42	30.046	1	243690			34672	5705	23972	24057	35100	35100					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7350769042969	2	437.735074	873.455596	0.6137	0.00026864	-0.69219	-0.000303	-0.078494	-3.436E-05	437.73462655536923	17.464	0.35601	17.464	17.39	17.746	0					22	9	4	0	0	0	0.015496	1	4925	4925		129.42	30.046	1	2650200			34673	5705	23972	24057	35101	35101					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.73486328125	2	437.735074	873.455596	-0.40038	-0.00017526	-0.072742	-3.1842E-05	-0.47312	-0.0002071	437.735035522474	17.413	0.40016	17.413	17.318	17.718	0					18	8	4	0	0	0	0.015496	1	5154	5154		129.42	33.606	1	1631000			34674	5705	23972	24057	35102	35102					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7352294921875	2	437.735074	873.455596	0.29812	0.0001305	0.432	0.0001891	0.73011	0.0003196	437.73511068222547	17.224	0.15536	17.224	17.139	17.294	0					9	4	3	0	0	0	0.0097668	1	4250	4250		141.52	48.325	1	155930			34675	5705	23972	24057	35103	35103					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7350158691406	2	437.735074	873.455596	-0.62405	-0.00027317	0.61433	0.00026892	-0.009715	-4.2526E-06	437.7353414697532	17.201	0.15362	17.201	17.128	17.281	0					7	4	2	0	0	0	0.032383	1	4244	4244		106.68	37.896	1	94416			34676	5705	23972	24057	35104	35104					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.73492431640625	2	437.735074	873.455596	-0.56753	-0.00024843	0.56355	0.00024668	-0.003978	-1.7413E-06	437.7351252296544	17.387	0.40667	17.387	17.293	17.7	0					18	8	4	0	0	0	0.022525	1	4993	4993		117.81	40.493	1	2393200			34677	5705	23972	24057	35105	35105					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.734619140625	2	437.735074	873.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.396	1	17.396	16.896	17.896	0								0	0	0	0.0026431	1	5011	5011		117.81	24.616	1				34678	5705	23972	24057	35106	35106					0.013806214837131847
SAGFPKAAKL	10	Unmodified	_SAGFPKAAKL_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	330.5310363769531	3	330.530798	988.570566	-0.7027	-0.00023226	1.3213	0.00043674	0.61863	0.00020448	330.5310979819403	18.554	0.073755	18.554	18.514	18.588	0					6	2	3	0	0	0	0.70877	1	4878	4878		20.03	0	1	412310			34679	3757	23973	24058	35107	35107					0.07582350685493111
SAGGGVGPQRK	11	Unmodified	_SAGGGVGPQRK_					0	0	0			REV__ENST00000391759.5_2_19:54617871-54617922:-|nuORF	REV__ENST00000391759.5_2_19:54617871-54617922:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.5234069824219	3	338.521074	1012.54139	3.0195	0.0010222	2.2902	0.00077527	5.3097	0.0017974	338.52236019321975	14.742	0.42019	14.742	14.575	14.995	0					20	8	5	0	0	0	0.72154	1	3746	3746		22.562	0	1	1482300	+		34680	18813	23974	24059	35108	35108					0.03562206389244693
SAGGHPLEL	9	Unmodified	_SAGGHPLEL_					0	0	0		DENND4B|p.L102Pfs*3|1|0.32|ENSG00000198837|chr1:153944070-153944071|-/G|frameshift_variant;DENND4B|p.P955Lfs*5|1|0.53|ENSG00000198837|chr1:153934212-153934212|G/-|frameshift_variant;DENND4B|p.R1054Dfs*76|3|0.43|ENSG00000198837|chr1:153933653-153933653|G/-|frameshift_variant;ENSG00000198837|ENST00000361217|DENND4B	DENND4B|p.L102Pfs*3|1|0.32|ENSG00000198837|chr1:153944070-153944071|-/G|frameshift_variant	DENND4B|p.L102Pfs*3|1|0.32|ENSG00000198837|chr1:153944070-153944071|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.7303466796875	2	440.729792	879.445031	0.79022	0.00034827	0.55054	0.00024264	1.3408	0.00059091	440.7299587469166	19.756	0.077465	19.756	19.682	19.759	0					4	2	2	0	0	0	0.39215	1	5163	5163		42.396	0.96952	1	56651			34681	771	23975	24060	35109	35109					0.00048638829287028784
SAGGPALL	8	Unmodified	_SAGGPALL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1;SBF1|p.L946Wfs*16|1|0.26|ENSG00000100241|chr22:50461526-50461526|G/-|frameshift_variant;SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant;SBF1|p.S1077Afs*28|3|0.34|ENSG00000100241|chr22:50460327-50460327|G/-|frameshift_variant	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.1976318359375	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.638	1	39.638	39.138	40.138	0								0	0	0	1.7419	1	15099	15099		21.702	0	1				34682	1988	23976	24061	35110	35110					0.025824837431400738
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENST00000511494.5_1_5:134670668-134681802:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	419.232421875	2	419.232502	836.450451	-1.3236	-0.00055489	0.91361	0.00038301	-0.40999	-0.00017188	419.23293016147176	15.475	0.3379	15.475	15.272	15.61	0					22	11	3	0	0	0	0.12239	1	3496	3496		74.255	24.813	1	291150			34683	2818	23977	24062	35111	35111					0.025683624117505133
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		ENSG00000113648|ENST00000511689|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENST00000511494.5_1_5:134670668-134681802:-|nuORF	ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000113648|ENST00000511689|MACROH2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.2322692871094	2	419.232502	836.450451	-0.044711	-1.8744E-05	0.28911	0.00012121	0.2444	0.00010246	419.23266382810743	15.477	0.27595	15.477	15.304	15.58	0					18	8	3	0	0	0	0.13267	1	3447	3447		71.877	19.578	1	277410			34684	2818	23977	24062	35112	35112					0.025683624117505133
SAGKVTQAL	9	Unmodified	_SAGKVTQAL_					0	0	0		ENST00000444100.2_1_2:61244714-61244768:+|nuORF	ENST00000444100.2_1_2:61244714-61244768:+|nuORF	ENST00000444100.2_1_2:61244714-61244768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7589111328125	2	437.753267	873.491981	-0.56714	-0.00024827	0.074257	3.2506E-05	-0.49289	-0.00021576	437.7533554154669	14.367	0.11572	14.367	14.308	14.423	0					4	2	2	0	0	0	0.4966	1	3546	3546		32.812	2.4947	1	224180			34685	9602	23978	24063	35113	35113					0.05017498380402685
SAGLGVQIKK	10	Unmodified	_SAGLGVQIKK_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.20977783203125	3	334.209836	999.60768	0.51967	0.00017368	-0.72547	-0.00024246	-0.2058	-6.8779E-05	334.2095987883365	15.198	0.091115	15.198	15.15	15.241	0					4	2	2	0	0	0	0.71938	1	3882	3882		18.531	0.26896	1	1040000	+		34686	13005	23979	24064	35114	35114					0.10786022231263814
SAGPPSLRK	9	Unmodified	_SAGPPSLRK_					0	0	0		ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.7666320800781	2	456.766709	911.518865	0.22223	0.00010151	-0.77331	-0.00035322	-0.55108	-0.00025172	456.7663237713029	18.157	0.40676	18.157	17.907	18.314	0					20	9	3	0	0	0	0.16806	1	4672	4672		65.465	23.069	1	404640			34687	4735	23980	24065	35115	35115					0.05956606991605895
SAGRYIPR	8	Unmodified	_SAGRYIPR_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-3|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-3|CFAP61	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2581481933594	2	460.259051	918.503549	-0.43537	-0.00020038	-2.0737	-0.00095444	-2.5091	-0.0011548	460.25795300474925	26.059	0.13887	26.059	25.998	26.137	0					9	5	2	0	0	0	0.64096	1	7868	7868		42.474	7.3224	1	139730	+		34688	13404	23981	24066	35116	35116					0.04103740194409511
SAGSVGFLK	9	Unmodified	_SAGSVGFLK_					0	0	0		PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;PSD3|p.F625Lfs*6|1|0.25|ENSG00000156011|chr8:18804557-18804557|A/-|frameshift_variant;PSD3|p.V655Efs*3|1|0.1|ENSG00000156011|chr8:18801329-18801330|-/CT|frameshift_variant;PSD3|p.L776Wfs*44|1|0.35|ENSG00000156011|chr8:18632699-18632699|A/-|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2424621582031	2	433.242535	864.470518	0.72093	0.00031234	-1.0937	-0.00047383	-0.37276	-0.00016149	433.2420836232268	31.084	0.42547	31.084	30.877	31.302	0					15	10	2	0	0	0	0.16806	1	11290	11290		65.465	17.55	1	227310			34689	5150	23982	24067	35117	35117					0.032861133517030794
SAGSVGFLK	9	Unmodified	_SAGSVGFLK_					0	0	0		PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;PSD3|p.F625Lfs*6|1|0.25|ENSG00000156011|chr8:18804557-18804557|A/-|frameshift_variant;PSD3|p.V655Efs*3|1|0.1|ENSG00000156011|chr8:18801329-18801330|-/CT|frameshift_variant;PSD3|p.L776Wfs*44|1|0.35|ENSG00000156011|chr8:18632699-18632699|A/-|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.24237060546875	2	433.242535	864.470518	-0.46355	-0.00020083	0.62066	0.0002689	0.15711	6.8065E-05	433.24266038563803	31.052	0.16037	31.052	30.997	31.157	0					5	3	2	0	0	0	0.22837	1	11688	11688		58.23	15.834	1	115990			34690	5150	23982	24067	35118	35118					0.032861133517030794
SAGSVGFLK	9	Unmodified	_SAGSVGFLK_					0	0	0		PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;PSD3|p.F625Lfs*6|1|0.25|ENSG00000156011|chr8:18804557-18804557|A/-|frameshift_variant;PSD3|p.V655Efs*3|1|0.1|ENSG00000156011|chr8:18801329-18801330|-/CT|frameshift_variant;PSD3|p.L776Wfs*44|1|0.35|ENSG00000156011|chr8:18632699-18632699|A/-|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.2423400878906	2	433.242535	864.470518	-0.49699	-0.00021532	0.17361	7.5214E-05	-0.32338	-0.0001401	433.2426595686518	31.034	0.46088	31.034	30.78	31.241	0					14	9	3	0	0	0	0.25716	1	11573	11573		54.776	10.66	1	252640			34691	5150	23982	24067	35119	35119					0.032861133517030794
SAGTTIYEKG	10	Unmodified	_SAGTTIYEKG_					0	0	0			REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1	REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.7582397460938	2	513.758746	1025.50294	-0.041747	-2.1448E-05	-1.0533	-0.00054112	-1.095	-0.00056257	513.7582363657541	24.22	0.14048	24.22	24.108	24.249	0					7	4	2	0	0	0	0.62235	1	7369	7369		31.53	1.2121	1	97247	+		34692	21736	23983	24068	35120	35120					-0.008791440359573244
SAGVGVLGTGL	11	Unmodified	_SAGVGVLGTGL_					0	0	0			REV__ENSG00000149489|ENST00000278833|ROM1	REV__ENSG00000149489|ENST00000278833|ROM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7662048339844	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.678	1	23.678	23.178	24.178	0								0	0	0	0.4303	1	7266	7266		30.318	3.5216	1		+		34693	15425	23984	24069	35121	35121					0.05061767551910634
SAGVQQKGKPQ	11	Unmodified	_SAGVQQKGKPQ_					0	0	0			REV__ENST00000464461.1_1_7:150413703-150416231:+|nuORF	REV__ENST00000464461.1_1_7:150413703-150416231:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	564.3138427734375	2	564.312012	1126.60947	1.2367	0.00069791	2.3039	0.0013001	3.5406	0.001998	564.3131448387902	24.662	0.72783	24.662	24.424	25.152	0					35	21	2	0	0	0	0.68382	1	7327	7327		29.17	0.020503	1	69949	+		34694	19403	23985	24070	35122	35122					0.05123031249240739
SAHAAIIAY	9	Unmodified	_SAHAAIIAY_					0	0	0		ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19	ENSG00000146955|ENST00000537763|RAB19	ENSG00000146955|ENST00000537763|RAB19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7478942871094	2	458.747985	915.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.898	1	31.898	31.398	32.398	0								0	0	0	0.27166	1	11034	11034		40.573	3.4135	1				34695	4758	23986	24071	35123	35123					0.020295157259852203
SAHEMGFL	8	Unmodified	_SAHEMGFL_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|343|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|343|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|343|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.204833984375	2	446.205096	890.395638	-1.167	-0.00052071	0.40755	0.00018185	-0.75944	-0.00033886	446.2052148309196	27.953	0.14957	27.953	27.903	28.052	0					7	5	2	0	0	0	0.68754	1	8961	8961		35.201	0	1	77013			34696	11291	23987	24072	35124	35124					-0.05394392451160002
SAHNGGSAF	9	Unmodified	_SAHNGGSAF_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3;PKP3|p.L464Sfs*183|3|0.22|ENSG00000184363|chr11:400077-400077|C/-|frameshift_variant;PKP3|p.L464Pfs*224|1|0.46|ENSG00000184363|chr11:400076-400077|-/C|frameshift_variant	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.1882019042969	2	424.188291	846.36203	-1.1202	-0.00047517	1.1073	0.0004697	-0.012894	-5.4694E-06	424.18876386472755	17.95	0.24045	17.95	17.831	18.072	0					14	6	3	0	0	0	0.19605	1	4598	4598		62.107	23.301	1	347630			34697	7011	23988	24073	35125	35125					-0.06729677898715636
SAHNGGSAF	9	Unmodified	_SAHNGGSAF_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3;PKP3|p.L464Sfs*183|3|0.22|ENSG00000184363|chr11:400077-400077|C/-|frameshift_variant;PKP3|p.L464Pfs*224|1|0.46|ENSG00000184363|chr11:400076-400077|-/C|frameshift_variant	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.1881103515625	2	424.188291	846.36203	-0.02221	-9.421E-06	-0.38739	-0.00016433	-0.4096	-0.00017375	424.1881120393358	18.009	0.25773	18.009	17.907	18.165	0					8	5	2	0	0	0	0.22377	1	4625	4625		58.782	25.266	1	148280			34698	7011	23988	24073	35126	35126					-0.06729677898715636
SAHSHFISL	9	Unmodified	_SAHSHFISL_					0	0	0		nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2;ARID2|p.P851Hfs*4|1|0.36|ENSG00000189079|chr12:45850671-45850671|C/-|frameshift_variant;ARID2|p.L370Ffs*18|1|0.33|ENSG00000189079|chr12:45837401-45837402|-/T|frameshift_variant;ARID2|p.Q686Hfs*19|1|0.04|ENSG00000189079|chr12:45850180-45850181|-/TGAAATGACTG|frameshift_variant;ENST00000479608.5_1_12:46230576-46239804:+|nuORF	nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7565002441406	2	499.756341	997.498129	0.8831	0.00044133	-3.3035	-0.0016509	-2.4204	-0.0012096	499.75451306790364	30.46	0.86099	30.46	30.136	30.997	0					50	19	5	0	0	0	0.020824	1	11373	11373		120.62	37.334	1	2072300			34699	221	23989	24074	35127	35127					-0.0007198338804528248
SAHSHFISL	9	Unmodified	_SAHSHFISL_					0	0	0		nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2;ARID2|p.P851Hfs*4|1|0.36|ENSG00000189079|chr12:45850671-45850671|C/-|frameshift_variant;ARID2|p.L370Ffs*18|1|0.33|ENSG00000189079|chr12:45837401-45837402|-/T|frameshift_variant;ARID2|p.Q686Hfs*19|1|0.04|ENSG00000189079|chr12:45850180-45850181|-/TGAAATGACTG|frameshift_variant;ENST00000479608.5_1_12:46230576-46239804:+|nuORF	nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7561950683594	2	499.756341	997.498129	2.92	0.0014593	-2.4886	-0.0012437	0.43143	0.00021561	499.7547071676757	30.397	0.69899	30.397	30.115	30.814	0					43	14	4	0	0	0	0.027316	1	11244	11244		111.65	29.343	1	1464000			34700	221	23989	24074	35128	35128					-0.0007198338804528248
SAHTRKRR	8	Unmodified	_SAHTRKRR_					0	0	0		ENST00000345057.8_1_16:67190567-67193991:-|nuORF	ENST00000345057.8_1_16:67190567-67193991:-|nuORF	ENST00000345057.8_1_16:67190567-67193991:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.86956787109375	3	337.868808	1010.58459	3.0168	0.0010193	-0.6153	-0.00020789	2.4015	0.00081139	337.8685767531991	14.936	0.16711	14.936	14.828	14.995	0					11	3	4	0	0	0	0.65276	1	3839	3839		40.573	40.573	1	1475800			34701	8758	23990	24075	35129	35129					0.07972440957166782
SAHVETGYKLK	11	Unmodified	_SAHVETGYKLK_					0	0	0		ENST00000452533.6_1_12:32896368-32896542:+|nuORF	ENST00000452533.6_1_12:32896368-32896542:+|nuORF	ENST00000452533.6_1_12:32896368-32896542:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	616.835205078125	2	616.83532	1231.65609	0.60517	0.00037329	-0.83853	-0.00051723	-0.23336	-0.00014394	616.8348844626614	29.484	0.30554	29.484	29.369	29.675	0					27	11	4	0	0	0	0.33926	1	9594	9594		58.23	0	1	621060			34702	9659	23991	24076	35130	35130					0.04952471080491705
SAHVRLLRG	9	Unmodified	_SAHVRLLRG_					0	0	0			REV__ENST00000428708.6_1_17:79089831-79089936:+|nuORF	REV__ENST00000428708.6_1_17:79089831-79089936:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.87432861328125	3	336.873559	1007.59885	3.5373	0.0011916	-0.88567	-0.00029836	2.6516	0.00089326	336.8732070062153	23.277	0.12951	23.277	23.232	23.361	0					5	3	2	0	0	0	0.47038	1	6721	6721		35.152	0	1	86175	+		34703	19137	23992	24077	35131	35131					0.09535093385477467
SAIAAKVKQ	9	Unmodified	_SAIAAKVKQ_					0	0	0			REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant	REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2846984863281	2	458.284734	914.554916	-0.68615	-0.00031445	0.29743	0.00013631	-0.38872	-0.00017814	458.28490544137924	18.434	0.11602	18.434	18.377	18.493	0					6	2	3	0	0	0	0.0061615	1	5667	5667		153.04	0	1	914840	+		34704	12501	23993	24078	35132	35132					0.09422064168472843
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.2707214355469	2	436.271627	870.528701	0.23013	0.0001004	-0.82514	-0.00035999	-0.59501	-0.00025959	436.2712285351116	31.351	0.22151	31.351	31.276	31.497	0					13	9	2	0	0	0	0.0406	1	10067	10067		98.629	32.2	1	145590			34705	5846	23994	24079	35133	35133					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2715148925781	2	436.271627	870.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.651	1	31.651	31.151	32.151	0								0	0	0	0.024201	1	11545	11545		98.629	39.847	1				34706	5846	23994	24079	35134	35134					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.27191162109375	2	436.271627	870.528701	0.64716	0.00028234	-1.596	-0.0006963	-0.94887	-0.00041396	436.27075426851746	31.66	0.45707	31.66	31.531	31.988	0					20	11	3	0	0	0	0.028876	1	11538	11538		110.12	32.802	1	941360			34707	5846	23994	24079	35135	35135					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7727355957031	2	436.271627	870.528701	3.1979	0.0013952	-2.8766	-0.001255	0.32127	0.00014016	436.2703467065182	31.398	0.16112	31.398	31.33	31.491	0					8	6	2	0	0	0	0.028876	1	10403	10403		110.12	35.865	1	39133			34708	5846	23994	24079	35136	35136					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.2714538574219	2	436.271627	870.528701	-0.88709	-0.00038701	0.20117	8.7765E-05	-0.68592	-0.00029925	436.2715613769206	31.392	0.11271	31.392	31.347	31.46	0					7	4	2	0	0	0	0.19605	1	10411	10411		62.107	10.772	1	30568			34709	5846	23994	24079	35137	35137					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.27130126953125	2	436.271627	870.528701	-0.42071	-0.00018354	-0.80668	-0.00035193	-1.2274	-0.00053548	436.2710271087921	31.58	0.44303	31.58	31.485	31.928	0					17	9	3	0	0	0	0.0406	1	11910	11910		98.629	32.2	1	776410			34710	5846	23994	24079	35138	35138					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.2716979980469	2	436.271627	870.528701	0.26502	0.00011562	-0.10127	-4.4183E-05	0.16374	7.1437E-05	436.2715279181177	31.411	0.18824	31.411	31.274	31.463	0					6	4	2	0	0	0	0.032052	1	10800	10800		107.01	37.38	1	94409			34711	5846	23994	24079	35139	35139					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.2713928222656	2	436.271627	870.528701	-0.6541	-0.00028537	-0.19441	-8.4818E-05	-0.84852	-0.00037018	436.271562481376	31.394	0.18398	31.394	31.303	31.487	0					7	4	2	0	0	0	0.07136	1	10797	10797		87.696	30.975	1	117250			34712	5846	23994	24079	35140	35140					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2718505859375	2	436.271627	870.528701	-0.54509	-0.00023781	0.26897	0.00011734	-0.27612	-0.00012046	436.27172496703884	31.578	0.26373	31.578	31.471	31.735	0					11	5	3	0	0	0	0.0086566	1	11811	11811		143.89	49.88	1	1252300			34713	5846	23994	24079	35141	35141					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.2714538574219	2	436.271627	870.528701	0.76015	0.00033163	-1.6923	-0.00073829	-0.93213	-0.00040666	436.27098979956435	31.596	0.26381	31.596	31.454	31.718	0					9	5	2	0	0	0	0.07136	1	11848	11848		87.696	30.975	1	637020			34714	5846	23994	24079	35142	35142					0.0882579499698295
SAIAIATGK	9	Unmodified	_SAIAIATGK_					0	0	0		CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant;ENSG00000103811|ENST00000220166|CTSH;ENST00000528191.5_1_15:79224365-79229419:-|nuORF;ENST00000533777.5_1_15:79224365-79230096:-|nuORF;ENST00000534038.5_1_15:79224365-79237386:-|nuORF	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.2503662109375	2	416.25036	830.486168	0.49743	0.00020705	-0.47268	-0.00019675	0.02475	1.0302E-05	416.2501708801461	25.517	0.14726	25.517	25.426	25.573	0					6	3	2	0	0	0	0.13726	1	8720	8720		70.816	27.952	1	109730			34715	714	23995	24080	35143	35143					0.06414399868754117
SAIASTKVM	9	Unmodified	_SAIASTKVM_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.24932861328125	2	454.249503	906.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.32	1	26.32	25.82	26.82	0								0	0	0	0.19847	1	7984	7984		51.193	5.2204	1				34716	2287	23996	24081	35144	35144					0.027470227885032727
SAIASTKVM	9	Unmodified	_SAIASTKVM_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.24932861328125	2	454.249503	906.484453	0.7096	0.00032233	-1.5848	-0.00071988	-0.87516	-0.00039754	454.24892764798966	26.589	0.35892	26.589	26.326	26.685	0					19	8	3	0	0	0	0.10506	1	9203	9203		78.264	18.146	1	475830			34717	2287	23996	24081	35145	35145					0.027470227885032727
SAIASTKVM	9	Unmodified	_SAIASTKVM_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.24908447265625	2	454.249503	906.484453	-1.1699	-0.0005314	0.6466	0.00029372	-0.52326	-0.00023769	454.2504921689616	26.318	0.3572	26.318	26.026	26.383	0					15	11	2	0	0	0	0.22837	1	8269	8269		58.23	13.853	1	239000			34718	2287	23996	24081	35146	35146					0.027470227885032727
SAIASTKVM	9	Unmodified	_SAIASTKVM_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2491149902344	2	454.249503	906.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.595	1	26.595	26.095	27.095	0								0	0	0	0.069826	1	9537	9537		80.455	34.482	1				34719	2287	23996	24081	35147	35147					0.027470227885032727
SAIASTKVM	9	Unmodified	_SAIASTKVM_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.249267578125	2	454.249503	906.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.406	1	26.406	25.906	26.906	0								0	0	0	0.27521	1	8498	8498		40.058	8.5284	1				34720	2287	23996	24081	35148	35148					0.027470227885032727
SAIASTKVM	9	Unmodified	_SAIASTKVM_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2491149902344	2	454.249503	906.484453	-2.6275	-0.0011935	-2.5792	-0.0011716	-5.2067	-0.0023651	454.2506511033239	26.378	0.19114	26.378	26.276	26.467	0					9	4	3	0	0	0	0.13726	1	8493	8493		70.816	21.375	1	256450			34721	2287	23996	24081	35149	35149					0.027470227885032727
SAIASTKVM	9	Unmodified	_SAIASTKVM_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2491149902344	2	454.249503	906.484453	0.87793	0.0003988	-2.6856	-0.0012199	-1.8076	-0.00082111	454.24875515033534	26.543	0.37212	26.543	26.282	26.654	0					17	7	4	0	0	0	0.13726	1	9404	9404		70.816	10.698	1	735820			34722	2287	23996	24081	35150	35150					0.027470227885032727
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	341.1952819824219	3	341.195198	1020.56377	0.37473	0.00012786	-0.011145	-3.8025E-06	0.36359	0.00012405	341.1951970177636	16.964	0.21139	16.964	16.909	17.12	0					13	7	3	0	0	0	0.30951	1	3954	3954		65.465	24.687	1	214740			34723	1209	23997	24082	35151	35151					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2892761230469	2	511.289159	1020.56377	-0.12934	-6.6129E-05	0.18701	9.5615E-05	0.05767	2.9486E-05	511.28941263727796	16.984	0.13552	16.984	16.903	17.039	0					10	5	3	0	0	0	0.14578	1	3957	3957		68.846	12.412	1	211720			34724	1209	23997	24082	35152	35152					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.19512939453125	3	341.195198	1020.56377	0.67339	0.00022976	-0.97556	-0.00033286	-0.30217	-0.0001031	341.1949302345165	17.265	0.17276	17.265	17.185	17.357	0					13	4	4	0	0	0	0.34452	1	4848	4848		53.597	13.539	1	4313500			34725	1209	23997	24082	35153	35153					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2893371582031	2	511.289159	1020.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.271	1	17.271	16.771	17.771	0								0	0	0	0.0026431	1	4841	4841		117.81	45.934	1				34726	1209	23997	24082	35154	35154					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2901306152344	2	511.289159	1020.56377	-0.37601	-0.00019225	0.34012	0.0001739	-0.035888	-1.8349E-05	511.28950095149185	17.026	0.18209	17.026	16.966	17.148	0					16	6	4	0	0	0	0.019258	1	4182	4182		123.21	50.329	1	1033100			34727	1209	23997	24082	35155	35155					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.19512939453125	3	341.195198	1020.56377	0.36106	0.00012319	-0.90159	-0.00030762	-0.54054	-0.00018443	341.19501047329845	17.276	0.26278	17.276	17.115	17.377	0					15	5	5	0	0	0	0.14578	1	5087	5087		84.817	17.324	1	3154800			34728	1209	23997	24082	35156	35156					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.289306640625	2	511.289159	1020.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.231	1	17.231	16.731	17.731	0								0	0	0	0.0040106	1	5080	5080		152.06	56.246	1				34729	1209	23997	24082	35157	35157					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.28961181640625	2	511.289159	1020.56377	0.37195	0.00019017	0.57205	0.00029248	0.944	0.00048266	511.28927493733954	17.036	0.17207	17.036	16.967	17.139	0					12	5	3	0	0	0	0.0059092	1	4172	4172		154.12	55.489	1	336460			34730	1209	23997	24082	35158	35158					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.289306640625	2	511.289159	1020.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.038	1	17.038	16.538	17.538	0								0	0	0	0.00067705	1	4166	4166		129.42	58.605	1				34731	1209	23997	24082	35159	35159					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.1952209472656	3	341.195198	1020.56377	-0.025281	-8.6256E-06	-0.34062	-0.00011622	-0.3659	-0.00012484	341.1951850137101	17.25	0.21164	17.25	17.141	17.353	0					14	4	4	0	0	0	0.10915	1	4928	4928		93.598	42.405	1	3085600			34732	1209	23997	24082	35160	35160					0.05430669742634109
SAIDKMTKK	9	Unmodified	_SAIDKMTKK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2891845703125	2	511.289159	1020.56377	1.396	0.00071374	-1.1382	-0.00058193	0.2578	0.00013181	511.2885430063549	17.235	0.41867	17.235	16.875	17.293	0					14	8	3	0	0	0	0.0063888	1	4924	4924		152.06	58.918	1	4685100			34733	1209	23997	24082	35161	35161					0.05430669742634109
SAIDSVNATSK	11	Unmodified	_SAIDSVNATSK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7813720703125	2	546.78021	1091.54587	1.6968	0.00092779	-0.60204	-0.00032918	1.0948	0.00059861	546.7798843959862	22.66	0.19723	22.66	22.594	22.791	0					12	6	3	0	0	0	0.00057589	1	6450	6450		139.15	70.307	1	273670			34734	2679;10509	23998	24083	35162	35162					0.0037562602146863355
SAIDSVNATSK	11	Unmodified	_SAIDSVNATSK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7804565429688	2	546.78021	1091.54587	1.8575	0.0010156	-1.172	-0.00064081	0.68548	0.00037481	546.7794941693813	22.988	0.30511	22.988	22.887	23.193	0					20	7	4	0	0	0	2.0157E-12	1	7548	7548		215.72	122.12	1	1975800			34735	2679;10509	23998	24083	35163	35163					0.0037562602146863355
SAIDSVNATSK	11	Unmodified	_SAIDSVNATSK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.78076171875	2	546.78021	1091.54587	0.46196	0.00025259	0.34149	0.00018672	0.80346	0.00043931	546.7802722722371	22.696	0.14573	22.696	22.63	22.776	0					12	5	3	0	0	0	0.047958	1	6715	6715		106.16	51.073	1	343430			34736	2679;10509	23998	24083	35164	35164					0.0037562602146863355
SAIDSVNATSK	11	Unmodified	_SAIDSVNATSK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7814331054688	2	546.78021	1091.54587	1.964	0.0010739	0.11105	6.0717E-05	2.075	0.0011346	546.7804007440525	22.759	0.10576	22.759	22.706	22.812	0					4	2	2	0	0	0	0.023577	1	6844	6844		118.23	59.987	1	187450			34737	2679;10509	23998	24083	35165	35165					0.0037562602146863355
SAIDSVNATSK	11	Unmodified	_SAIDSVNATSK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7808227539062	2	546.78021	1091.54587	1.1334	0.00061973	-0.069394	-3.7943E-05	1.064	0.00058179	546.7799727688998	22.782	0.18863	22.782	22.694	22.883	0					8	4	3	0	0	0	3.6553E-05	1	6835	6835		166.86	88.6	1	257330			34738	2679;10509	23998	24083	35166	35166					0.0037562602146863355
SAIDSVNATSK	11	Unmodified	_SAIDSVNATSK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7804565429688	2	546.78021	1091.54587	0.54317	0.00029699	0.19178	0.00010486	0.73495	0.00040186	546.7801392020651	22.897	0.26422	22.897	22.789	23.053	0					15	5	4	0	0	0	3.7792E-08	1	7674	7674		195.83	77.086	1	2222700			34739	2679;10509	23998	24083	35167	35167					0.0037562602146863355
SAIDSVNATSK	11	Unmodified	_SAIDSVNATSK_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7804565429688	2	546.78021	1091.54587	1.9103	0.0010445	-1.3496	-0.00073792	0.56072	0.00030659	546.7794588790894	22.88	0.36152	22.88	22.772	23.133	0					13	7	2	0	0	0	2.1231000000000002E-25	1	7685	7685		242.35	138.33	1	2242600			34740	2679;10509	23998	24083	35168	35168					0.0037562602146863355
SAIEARVKQ	9	Unmodified	_SAIEARVKQ_					0	0	0			REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29058837890625	2	501.290548	1000.56654	-0.58821	-0.00029486	1.1263	0.00056461	0.5381	0.00026974	501.2912357100857	15.468	0.80177	15.468	15.364	16.166	0					47	16	6	0	0	0	0.16806	1	4262	4262		32.812	0	1	40149000	+		34741	14023	23999	24084	35169	35169					0.06628261191804086
SAIEGPGLTPV	11	Unmodified	_SAIEGPGLTPV_					0	0	0			REV__SEZ6|p.P306Lfs*27|1|0.38|ENSG00000063015|chr17:28969896-28969896|C/-|frameshift_variant	REV__SEZ6|p.P306Lfs*27|1|0.38|ENSG00000063015|chr17:28969896-28969896|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.5260009765625	3	347.525602	1039.55498	-0.038819	-1.349E-05	0.79872	0.00027758	0.7599	0.00026408	347.525954805404	27.264	0.27044	27.264	27.154	27.424	0					11	5	3	0	0	0	0.77686	1	9752	9752		36.318	12.94	1	316280	+		34742	13094	24000	24085	35170	35170					0.036780193777985914
SAIEGTKSAK	10	Unmodified	_SAIEGTKSAK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-6|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2740783691406	2	496.274564	990.534574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.837	1	13.837	13.337	14.337	0								0	0	0	0.40797	1	2899	2899		28.081	1.0342	1				34743	3289	24001	24086	35171	35171					0.038928487179987314
SAIFRSDSL	9	Unmodified	_SAIFRSDSL_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2624816894531	2	498.261456	994.50836	-1.1083	-0.00055223	-0.90523	-0.00045104	-2.0135	-0.0010033	498.2612643366568	35.888	0.12096	35.888	35.791	35.912	0					9	5	2	0	0	0	0.36892	1	12143	12143		44.377	5.571	1	52724			34744	6825	24002	24087	35172	35172					0.01088579546535584
SAIFRSDSL	9	Unmodified	_SAIFRSDSL_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2612609863281	2	498.261456	994.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.069	1	36.069	35.569	36.569	0								0	0	0	0.25045	1	14022	14022		43.651	5.8393	1				34745	6825	24002	24087	35173	35173					0.01088579546535584
SAIFSEGKI	9	Unmodified	_SAIFSEGKI_					0	0	0			REV__ENST00000359195.3_1_7:106505947-106508023:+|nuORF	REV__ENST00000359195.3_1_7:106505947-106508023:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.26019287109375	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.254	1	42.254	41.754	42.754	0								0	0	0	0.28666	1	16590	16590		37.812	0.65241	1		+		34746	18544	24003	24088	35174	35174					0.03006365177634507
SAIGCHVVN	9	Unmodified	_SAIGCHVVN_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.22662353515625	2	450.22382	898.433086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.4	1	20.4	19.9	20.9	0								0	0	0	0.11184	1	5690	5690		68.787	17.451	1				34747	2149	24004	24089	35175	35175					-0.02019301185544009
SAIGRAMEL	9	Unmodified	_SAIGRAMEL_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.25213623046875	2	474.252577	946.490601	0.28362	0.00013451	-1.2122	-0.00057488	-0.92857	-0.00044038	474.25212367666	36.465	0.3051	36.465	36.38	36.685	0					18	8	3	0	0	0	0.15558	1	13763	13763		66.962	13.61	1	467490			34748	7402	24005	24090	35176	35176					0.015215410200198676
SAIGRAMEL	9	Unmodified	_SAIGRAMEL_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2525939941406	2	474.252577	946.490601	0.60843	0.00028855	-0.4624	-0.0002193	0.14603	6.9254E-05	474.2522475157188	36.463	0.36481	36.463	36.35	36.714	0					20	10	3	0	0	0	0.25761	1	14212	14212		54.722	10.606	1	461180			34749	7402	24005	24090	35177	35177					0.015215410200198676
SAIGRAMEL	9	Unmodified	_SAIGRAMEL_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.252197265625	2	474.252577	946.490601	0.69705	0.00033058	-1.4188	-0.00067286	-0.72172	-0.00034228	474.25199162848617	36.374	0.31757	36.374	36.313	36.63	0					20	6	4	0	0	0	0.25761	1	14141	14141		54.722	4.6978	1	876730			34750	7402	24005	24090	35178	35178					0.015215410200198676
SAIIAKPG	8	Unmodified	_SAIIAKPG_					0	0	0		ENSG00000135931|ENST00000611582|ARMC9	ENSG00000135931|ENST00000611582|ARMC9	ENSG00000135931|ENST00000611582|ARMC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.7359924316406	2	378.734346	755.454139	0.81554	0.00030887	2.7336	0.0010353	3.5491	0.0013442	378.73531388976875	38.951	0.25533	38.951	38.842	39.097	0					12	9	2	0	0	0	0.75243	1	14822	14822		26.796	6.3143	1	82729			34751	4037	24006	24091	35179	35179					0.06663032185622342
SAIKENFQF	9	Unmodified	_SAIKENFQF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2774047851562	2	542.277106	1082.53966	0.31555	0.00017112	0.095275	5.1666E-05	0.41083	0.00022278	542.2771225400278	39.276	0.15359	39.276	39.207	39.36	0					8	5	2	0	0	0	0.38666	1	15446	15446		42.864	10.052	1	94203			34752	6411	24007	24092	35180	35180					0.0016915258061089844
SAIKENFQF	9	Unmodified	_SAIKENFQF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2786254882812	2	542.277106	1082.53966	3.5773	0.0019399	0.27594	0.00014964	3.8532	0.0020895	542.2778192645208	39.244	0.50219	39.244	39.141	39.643	0					18	11	3	0	0	0	0.18416	1	15499	15499		63.534	0.22758	1	520740			34753	6411	24007	24092	35181	35181					0.0016915258061089844
SAIKRALNE	9	Unmodified	_SAIKRALNE_					0	0	0			REV__ENSG00000176101|ENST00000322310|SSNA1	REV__ENSG00000176101|ENST00000322310|SSNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2899169921875	2	501.290548	1000.56654	1.1197	0.00056129	-0.68072	-0.00034124	0.43898	0.00022006	501.2901255900728	49.309	1.2755	49.309	49.113	50.389	0					158	63	3	0	0	0	0.49718	1	19477	19477		25.574	0	1	643040	+		34754	16643	24008	24093	35182	35182					0.06628261191792717
SAINDKSIVKK	11	Unmodified	_SAINDKSIVKK_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.5750427246094	3	401.574955	1201.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.761	1	18.761	18.261	19.261	0								0	0	0	0.45674	1	5547	5547		22.562	0.87584	1				34755	3714	24009	24094	35183	35183					0.11025330631650831
SAINDKSIVKK	11	Unmodified	_SAINDKSIVKK_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.5749816894531	3	401.574955	1201.70304	0.94396	0.00037907	-0.73585	-0.0002955	0.20811	8.3573E-05	401.5746623463802	18.725	0.13136	18.725	18.641	18.773	0					7	3	3	0	0	0	0.66391	1	5545	5545		31.068	6.8363	1	372380			34756	3714	24009	24094	35184	35184					0.11025330631650831
SAINDKSIVKK	11	Unmodified	_SAINDKSIVKK_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.5748596191406	3	401.574955	1201.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.695	1	18.695	18.195	19.195	0								0	0	0	0.32833	1	5782	5782		48.188	11.87	1				34757	3714	24009	24094	35185	35185					0.11025330631650831
SAINDKSIVKK	11	Unmodified	_SAINDKSIVKK_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.5747375488281	3	401.574955	1201.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.707	1	18.707	18.207	19.207	0								0	0	0	0.44222	1	5650	5650		27.644	2.5179	1				34758	3714	24009	24094	35186	35186					0.11025330631650831
SAINEVVTR	9	Unmodified	_SAINEVVTR_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7746887207031	2	494.774731	987.534909	0.74992	0.00037104	-0.59994	-0.00029684	0.14997	7.4203E-05	494.7744460509168	27.519	0.1341	27.519	27.46	27.594	0					8	3	3	0	0	0	0.16962	1	9630	9630		65.278	5.1593	1	241530			34759	1468	24010	24095	35187	35187					0.040642684378553895
SAIQDHKM	8	Unmodified	_SAIQDHKM_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2287292480469	2	465.229102	928.443651	-0.49079	-0.00022833	-0.54983	-0.0002558	-1.0406	-0.00048413	465.22895098636326	20.503	0.16612	20.503	20.394	20.56	0					7	3	3	0	0	0	0.66095	1	6537	6537		39.253	0.44669	1	484170	+		34760	14831	24011	24096	35188	35188					-0.023433185311205307
SAIQRQEK	8	Unmodified	_SAIQRQEK_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2689514160156	2	480.267073	958.519593	-0.49927	-0.00023978	3.6643	0.0017599	3.1651	0.0015201	480.26868726010105	28.854	0.36265	28.854	28.597	28.96	0					9	7	2	0	0	0	0.53424	1	10632	10632		56.721	3.3696	1	175910			34761	2134	24012	24097	35189	35189					0.038674016406730516
SAISAGAGLGA	11	Unmodified	_SAISAGAGLGA_					0	0	0		ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7347106933594	2	437.735074	873.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.251	1	21.251	20.751	21.751	0								0	0	0	0.38155	1	6127	6127		40.778	5.1599	1				34762	10407	24013	24098	35190	35190					0.013806214837245534
SAISNVCSK	9	Unmodified	_SAISNVCSK_					0	0	0			REV__ENSG00000259823|ENST00000590317|LYPD8	REV__ENSG00000259823|ENST00000590317|LYPD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.7284851074219	2	454.728935	907.443317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.736	1	19.736	19.236	20.236	0								0	0	0	0.19616	1	5418	5418		51.528	1.4942	1		+		34763	17771	24014	24099	35191	35191					-0.014107382509678246
SAISPKSSL	9	Unmodified	_SAISPKSSL_					0	0	0		ENSG00000144161|ENST00000409573|ZC3H8	ENSG00000144161|ENST00000409573|ZC3H8	ENSG00000144161|ENST00000409573|ZC3H8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2530517578125	2	445.2531	888.491647	0.59802	0.00026627	1.5652	0.00069693	2.1633	0.0009632	445.25269724852376	25.477	0.77179	25.477	25.242	26.014	0					36	16	5	0	0	0	0.070005	1	8696	8696		88.177	16.299	1	408650			34764	4603	24015	24100	35192	35192					0.04294078660575451
SAISSPLTK	9	Unmodified	_SAISSPLTK_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;AKAP13|p.S1688C|1|0.06|ENSG00000170776|chr15:85669792-85669792|C/G|missense_variant	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2603759765625	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.21	1	27.21	26.71	27.71	0								0	0	0	0.12601	1	8363	8363		65.465	8.7443	1				34765	6257	24016	24101	35193	35193					0.05214365177619129
SAISSPLTK	9	Unmodified	_SAISSPLTK_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;AKAP13|p.S1688C|1|0.06|ENSG00000170776|chr15:85669792-85669792|C/G|missense_variant	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.26055908203125	2	452.260925	902.507297	0.25795	0.00011666	-0.64636	-0.00029232	-0.38841	-0.00017566	452.260564344153	27.521	0.38802	27.521	27.265	27.653	0					22	9	3	0	0	0	0.24334	1	9556	9556		56.434	8.7765	1	404160			34766	6257	24016	24101	35194	35194					0.05214365177619129
SAISSPLTK	9	Unmodified	_SAISSPLTK_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;AKAP13|p.S1688C|1|0.06|ENSG00000170776|chr15:85669792-85669792|C/G|missense_variant	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.260498046875	2	452.260925	902.507297	-0.11479	-5.1916E-05	-0.54063	-0.00024451	-0.65543	-0.00029642	452.2606190474925	27.481	0.41354	27.481	27.22	27.634	0					19	8	3	0	0	0	0.070005	1	9970	9970		88.177	20.683	1	887530			34767	6257	24016	24101	35195	35195					0.05214365177619129
SAISSPLTK	9	Unmodified	_SAISSPLTK_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;AKAP13|p.S1688C|1|0.06|ENSG00000170776|chr15:85669792-85669792|C/G|missense_variant	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.26055908203125	2	452.260925	902.507297	-0.41198	-0.00018632	-1.5066	-0.00068136	-1.9185	-0.00086768	452.26077470693747	27.429	0.37291	27.429	27.204	27.577	0					20	7	4	0	0	0	0.14578	1	9798	9798		68.846	17.511	1	715050			34768	6257	24016	24101	35196	35196					0.05214365177619129
SAIVEIFSK	9	Unmodified	_SAIVEIFSK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2852478027344	2	497.2844	992.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.9	1	41.9	41.4	42.4	0								0	0	0	0.25587	1	13383	13383		42.864	13.715	1				34769	1248	24017	24102	35197	35197					0.057672247287769096
SAIVEIFSK	9	Unmodified	_SAIVEIFSK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2844543457031	2	497.2844	992.554247	0.7085	0.00035233	0.22551	0.00011214	0.93401	0.00046447	497.28446429676154	42.226	0.22479	42.226	42.143	42.368	0					26	11	3	0	0	0	0.16806	1	15992	15992		65.465	12.114	1	200140			34770	1248	24017	24102	35198	35198					0.057672247287769096
SAIVEIFSK	9	Unmodified	_SAIVEIFSK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.28436279296875	2	497.2844	992.554247	-1.1495	-0.00057165	0.49131	0.00024432	-0.65823	-0.00032733	497.28456651483685	41.991	0.12074	41.991	41.94	42.061	0					11	7	2	0	0	0	0.41958	1	13888	13888		40.058	0.80534	1	75702			34771	1248	24017	24102	35199	35199					0.057672247287769096
SAIVEIFSK	9	Unmodified	_SAIVEIFSK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.28448486328125	2	497.2844	992.554247	0.16868	8.3884E-05	-0.35743	-0.00017775	-0.18875	-9.3862E-05	497.2842964950923	41.974	0.093033	41.974	41.93	42.023	0					7	5	2	0	0	0	0.59223	1	14723	14723		22.58	2.5829	1	40853			34772	1248	24017	24102	35200	35200					0.057672247287769096
SAIVEIFSK	9	Unmodified	_SAIVEIFSK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.28485107421875	2	497.2844	992.554247	-0.70788	-0.00035202	2.1794	0.0010838	1.4716	0.00073179	497.2852920014522	42.174	0.17021	42.174	42.076	42.246	0					10	4	3	0	0	0	0.12834	1	16797	16797		72.879	25.222	1	204310			34773	1248	24017	24102	35201	35201					0.057672247287769096
SAIVEIFSK	9	Unmodified	_SAIVEIFSK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.28387451171875	2	497.2844	992.554247	0.99681	0.0004957	-1.184	-0.0005888	-0.18722	-9.3104E-05	497.28373396059607	42.136	0.3185	42.136	42.065	42.383	0					18	8	3	0	0	0	0.21419	1	16791	16791		59.931	8.7381	1	515090			34774	1248	24017	24102	35202	35202					0.057672247287769096
SAKEGILLNIG	11	Unmodified	_SAKEGILLNIG_					0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.2203369140625	3	372.220401	1113.63937	-1.0418	-0.00038777	0.78814	0.00029336	-0.25363	-9.4406E-05	372.22049533051694	23.83	0.27375	23.83	23.669	23.942	0					15	9	2	0	0	0	0.76133	1	7220	7220		21.78	0.94327	1	90519	+		34775	22211	24018	24103	35203	35203					0.08709970194558991
SAKGLESIRV	10	Unmodified	_SAKGLESIRV_					0	0	0		LIN28A|p.K99N|1|0.28|ENSG00000131914|chr1:26425371-26425371|G/C|missense_variant;ENSG00000131914|ENST00000326279|LIN28A	LIN28A|p.K99N|1|0.28|ENSG00000131914|chr1:26425371-26425371|G/C|missense_variant	LIN28A|p.K99N|1|0.28|ENSG00000131914|chr1:26425371-26425371|G/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.87689208984375	3	353.876746	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.603	1	12.603	12.103	13.103	0								0	0	0	0.4201	1	2722	2722		9.6461	0.46323	1				34776	3749	24019	24104	35204	35204					0.08144816880326289
SAKILPSLL	9	Unmodified	_SAKILPSLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.304931640625	2	471.305136	940.595718	-0.0099132	-4.6721E-06	-0.23798	-0.00011216	-0.24789	-0.00011683	471.3050479251533	37.995	0.14136	37.995	37.946	38.088	0					14	8	2	0	0	0	0.47473	1	12423	12423		35.152	0.97948	1	43108			34777	1272	24020	24105	35205	35205					0.12304405488100656
SAKKNTSGKR	10	Unmodified	_SAKKNTSGKR_					0	0	0		LRGUK|p.T659Nfs*26|1|0.44|ENSG00000155530|chr7:134221903-134221904|-/A|frameshift_variant	LRGUK|p.T659Nfs*26|1|0.44|ENSG00000155530|chr7:134221903-134221904|-/A|frameshift_variant	LRGUK|p.T659Nfs*26|1|0.44|ENSG00000155530|chr7:134221903-134221904|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.5451354980469	3	359.543878	1075.60981	0.7257	0.00026092	3.0415	0.0010935	3.7672	0.0013545	359.54502214091775	14.341	0.32693	14.341	14.223	14.55	0					13	8	2	0	0	0	0.35046	1	3480	3480		61.691	6.9689	1	1345400			34778	11322	24021	24106	35206	35206					0.0750245096908202
SAKKVYGAAI	10	Unmodified	_SAKKVYGAAI_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5344543457031	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.679	1	55.679	55.179	56.179	0								0	0	0	0.4201	1	16212	16212		16.007	3.8001	1				34779	772	24022	24107	35207	35207					0.0781033333993264
SAKKVYGAAI	10	Unmodified	_SAKKVYGAAI_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.975	1	22.975	22.475	23.475	0								0	0	0	0.4201	1	6839	6839		29.17	3.1067	1				34780	772	24022	24107	35208	35208					0.0781033333993264
SAKKVYGAAI	10	Unmodified	_SAKKVYGAAI_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53424072265625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.41	1	27.41	26.91	27.91	0								0	0	0	0.4201	1	9807	9807		16.717	0	1				34781	772	24022	24107	35209	35209					0.0781033333993264
SAKKVYGAAI	10	Unmodified	_SAKKVYGAAI_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5340881347656	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.992	1	48.992	48.492	49.492	0								0	0	0	0.4201	1	19426	19426		22.58	9.1256	1				34782	772	24022	24107	35210	35210					0.0781033333993264
SAKRSGFDIG	10	Unmodified	_SAKRSGFDIG_					0	0	0			REV__ENSG00000250423|ENST00000691062|KIAA1210	REV__ENSG00000250423|ENST00000691062|KIAA1210	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.5173034667969	3	346.517329	1036.53016	-0.03651	-1.2651E-05	-0.15788	-5.471E-05	-0.19439	-6.7361E-05	346.5172734838958	17.438	0.20458	17.438	17.342	17.547	0					8	4	2	0	0	0	0.28675	1	5018	5018		68.846	12.412	1	563630	+		34783	17728	24023	24108	35211	35211					0.013353842950891703
SAKSIFNKL	9	Unmodified	_SAKSIFNKL_					0	0	0			REV__nc|ENSG00000136161|O95199-2|RCBTB2	REV__nc|ENSG00000136161|O95199-2|RCBTB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.333	1	23.333	22.833	23.833	0								0	0	0	0.35507	1	8025	8025		24.519	0	1		+		34784	14854	24024	24109	35212	35212					0.0781033333993264
SAKSNKFII	9	Unmodified	_SAKSNKFII_					0	0	0		ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENST00000595692.1_1_19:7679981-7682940:+|nuORF	ENSG00000076826|ENST00000160298|CAMSAP3	ENSG00000076826|ENST00000160298|CAMSAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.489	1	41.489	40.989	41.989	0								0	0	0	0.34907	1	16506	16506		25.574	0	1				34785	1568	24025	24110	35213	35213					0.07810333339955378
SAKTAIFKT	9	Unmodified	_SAKTAIFKT_					0	0	0		ENST00000323588.8_2_3:52284308-52284410:+|nuORF	ENST00000323588.8_2_3:52284308-52284410:+|nuORF	ENST00000323588.8_2_3:52284308-52284410:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.8587951660156	3	322.858804	965.554582	0.55861	0.00018035	-0.36568	-0.00011806	0.19293	6.229E-05	322.8586304869164	20.504	0.2654	20.504	20.396	20.662	0					9	5	3	0	0	0	0.48389	1	6667	6667		41.427	9.7923	1	884220			34786	8632	24026	24111	35214	35214					0.07042644448608826
SAKTVEQVY	9	Unmodified	_SAKTVEQVY_					0	0	0			REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF	REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2723999023438	2	512.769114	1023.52368	0.49743	0.00025507	0.19887	0.00010197	0.69629	0.00035704	512.7691513444828	18.053	0.65638	18.053	17.863	18.52	0					39	16	6	0	0	0	0.45358	1	4604	4604		37.159	1.5408	1	8390200	+		34787	19151	24027	24112	35215	35215					0.012854463437065533
SAKVTHLGLL	10	Unmodified	_SAKVTHLGLL_					0	0	0		SNTA1|p.R500H|1|0.38|ENSG00000101400|chr20:33408526-33408526|C/T|missense_variant	SNTA1|p.R500H|1|0.38|ENSG00000101400|chr20:33408526-33408526|C/T|missense_variant	SNTA1|p.R500H|1|0.38|ENSG00000101400|chr20:33408526-33408526|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.88165283203125	3	346.88172	1037.62333	0.68956	0.0002392	-0.90052	-0.00031238	-0.21096	-7.318E-05	346.88137549782374	20.584	0.3318	20.584	20.433	20.765	0					17	7	3	0	0	0	0.39827	1	6414	6414		56.434	8.4743	1	771790			34788	22430	24028	24113	35216	35216					0.10602308748320866
SAKWPLASQL	10	Unmodified	_SAKWPLASQL_					0	0	0		ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.5411071777344	3	367.541475	1099.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.824	1	14.824	14.324	15.324	0								0	0	0	0.4201	1	3696	3696		24.232	6.7638	1				34789	8835	24029	24114	35217	35217					0.056777183686335775
SAKWPTRPQ	9	Unmodified	_SAKWPTRPQ_					0	0	0			REV__ENST00000372409.7_1_20:44572315-44574382:+|nuORF	REV__ENST00000372409.7_1_20:44572315-44574382:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7926635742188	2	535.790715	1069.56688	3.3603	0.0018004	0.23559	0.00012622	3.5959	0.0019266	535.7906816104373	14.134	0.41776	14.134	14.073	14.491	0					11	8	2	0	0	0	0.076532	1	3456	3456		79.713	0.26157	1	1474700	+		34790	18669	24030	24115	35218	35218					0.0348768091164402
SAKWPTRPQ	9	Unmodified	_SAKWPTRPQ_					0	0	0			REV__ENST00000372409.7_1_20:44572315-44574382:+|nuORF	REV__ENST00000372409.7_1_20:44572315-44574382:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.5305480957031	3	357.529569	1069.56688	3.0777	0.0011004	-0.54877	-0.0001962	2.5289	0.00090417	357.52947799860345	14.129	0.21709	14.129	14.073	14.29	0					9	4	3	0	0	0	0.36892	1	3458	3458		44.377	9.199	1	1076100	+		34791	18669	24030	24115	35219	35219					0.0348768091164402
SAKYKKGVE	9	Unmodified	_SAKYKKGVE_					0	0	0		ENST00000547216.1_1_12:57871100-57871594:-|nuORF;ENST00000551000.1_1_12:57871100-57871616:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	337.1940002441406	3	337.194075	1008.5604	-0.70272	-0.00023695	0.49816	0.00016798	-0.20456	-6.8978E-05	337.19428183315944	14.287	0.24724	14.287	14.216	14.463	0					20	10	4	0	0	0	0.42902	1	3056	3056		38.754	0	1	1431100			34792	10587	24031	24116	35220	35220					0.05645742960280131
SALAQAPAPV	10	Unmodified	_SALAQAPAPV_					0	0	0		ENST00000525693.5_1_11:65421851-65422496:-|nuORF;RELA|p.H487Tfs*7|1|0.33|ENSG00000173039|chr11:65654575-65654575|G/-|frameshift_variant;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;RELA|p.P521Rfs*26|1|0.42|ENSG00000173039|chr11:65654472-65654472|G/-|frameshift_variant;RELA|p.D512Tfs*35|1|0.34|ENSG00000173039|chr11:65654501-65654501|G/-|frameshift_variant;nc|ENSG00000173039|Q04206-4|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENSG00000173039|ENST00000406246|RELA	ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000525693.5_1_11:65421851-65422496:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.7599182128906	2	462.761092	923.507631	0.71325	0.00033006	-4.2813	-0.0019812	-3.5681	-0.0016512	462.7599142527317	42.809	0.1226	42.809	42.736	42.859	0					8	5	2	0	0	0	0.51121	1	16803	16803		44.117	0	1	64121			34793	6402	24032	24117	35221	35221					0.04281784897466423
SALASKVHQ	9	Unmodified	_SALASKVHQ_					0	0	0			REV__nc|ENSG00000137713|P30154-5|PPP2R1B	REV__nc|ENSG00000137713|P30154-5|PPP2R1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7640075683594	2	470.764166	939.513779	-0.60308	-0.00028391	0.18993	8.9414E-05	-0.41315	-0.00019449	470.76421155708005	16.557	0.45798	16.557	16.442	16.9	0					28	13	4	0	0	0	0.028876	1	3943	3943		110.12	2.0324	1	10821000	+		34794	13783	24033	24118	35222	35222					0.04160303129003751
SALASKVHQ	9	Unmodified	_SALASKVHQ_					0	0	0			REV__nc|ENSG00000137713|P30154-5|PPP2R1B	REV__nc|ENSG00000137713|P30154-5|PPP2R1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7638854980469	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.095	1	17.095	16.595	17.595	0								0	0	0	0.26578	1	4869	4869		41.427	0.64845	1		+		34795	13783	24033	24118	35223	35223					0.04160303129003751
SALASSTGK	9	Unmodified	_SALASSTGK_					0	0	0		ENST00000409028.8_1_2:101635554-101635701:+|nuORF	ENST00000409028.8_1_2:101635554-101635701:+|nuORF	ENST00000409028.8_1_2:101635554-101635701:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.22247314453125	2	411.2218	820.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.435	1	36.435	35.935	36.935	0								0	0	0	0.3368	1	13742	13742		27.882	1.0861	1				34796	9291	24034	24119	35224	35224					0.011649325923940523
SALCPKFLHT	10	Carbamidomethyl (C)	_SALC(Carbamidomethyl (C))PKFLHT_	SALC(1)PKFLHT		SALC(40)PKFLHT		0	1	0		ENST00000492336.5_1_21:37692562-37711220:+|nuORF;ENSG00000159256|ENST00000400485|MORC3	ENST00000492336.5_1_21:37692562-37711220:+|nuORF	ENST00000492336.5_1_21:37692562-37711220:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.8740234375	3	391.874348	1172.60121	-0.6756	-0.00026475	0.21087	8.2635E-05	-0.46472	-0.00018211	391.87428973100583	20.402	0.21548	20.402	20.344	20.56	0					8	4	3	0	0	0	0.54861	1	6489	6489		40.058	6.1365	1	140820			34797	5304	24035	24120	35225	35225	217				0.021817610082280225
SALDAITKK	9	Unmodified	_SALDAITKK_					0	0	0		tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.78155517578125	2	473.782025	945.549496	-0.12146	-5.7547E-05	-0.66946	-0.00031718	-0.79093	-0.00037473	473.7816339268382	23.971	0.165	23.971	23.864	24.029	0					7	3	3	0	0	0	0.037569	1	8343	8343		101.6	3.0187	1	252110			34798	22639	24036	24121	35226	35226					0.07454340585979935
SALDTLRKL	9	Unmodified	_SALDTLRKL_					0	0	0			REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.541259765625	3	339.541475	1015.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.623	1	22.623	22.123	23.123	0								0	0	0	0.35899	1	6689	6689		23.523	8.829	1		+		34799	17227	24037	24122	35227	35227					0.09541718368666352
SALEEYTKK	9	Unmodified	_SALEEYTKK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7823486328125	2	534.782222	1067.54989	0.57126	0.0003055	0.093583	5.0047E-05	0.66484	0.00035554	534.782307408421	22.011	0.41997	22.011	21.794	22.214	0					31	12	5	0	0	0	0.037924	1	6167	6167		101.25	39.145	1	768000			34800	3063	24038	24123	35228	35228					0.01881715515196447
SALEEYTKK	9	Unmodified	_SALEEYTKK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7824096679688	2	534.782222	1067.54989	0.17236	9.2175E-05	0.40013	0.00021398	0.57249	0.00030616	534.7824456409264	22.325	0.58395	22.325	22.061	22.645	0					41	13	6	0	0	0	0.011389	1	7267	7267		138.06	68.435	1	4325100			34801	3063	24038	24123	35229	35229					0.01881715515196447
SALEEYTKK	9	Unmodified	_SALEEYTKK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	356.8572082519531	3	356.85724	1067.54989	0.30662	0.00010942	-0.37362	-0.00013333	-0.067004	-2.3911E-05	356.857088712835	22.277	0.21428	22.277	22.119	22.334	0					10	4	3	0	0	0	0.53064	1	7528	7528		43.651	43.651	1	542780			34802	3063	24038	24123	35230	35230					0.01881715515196447
SALEEYTKK	9	Unmodified	_SALEEYTKK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7825927734375	2	534.782222	1067.54989	0.29069	0.00015545	-0.033606	-1.7972E-05	0.25708	0.00013748	534.782333900223	22.294	0.26405	22.294	22.136	22.4	0					8	5	2	0	0	0	0.017421	1	7511	7511		126.24	52.268	1	1703000			34803	3063	24038	24123	35231	35231					0.01881715515196447
SALEHSIQY	9	Unmodified	_SALEHSIQY_					0	0	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.259765625	2	524.258914	1046.50327	0.71789	0.00037636	0.39331	0.0002062	1.1112	0.00058256	524.2590394087898	31.572	0.18938	31.572	31.482	31.671	0					22	8	3	0	0	0	0.1424	1	10152	10152		69.628	25.511	1	534570			34804	3231	24039	24124	35232	35232					-0.018117243160759244
SALEHSIQY	9	Unmodified	_SALEHSIQY_					0	0	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2596435546875	2	524.258914	1046.50327	0.092345	4.8413E-05	0.85605	0.00044879	0.9484	0.00049721	524.2593877265241	31.819	0.42086	31.819	31.518	31.938	0					20	10	3	0	0	0	0.16806	1	11610	11610		65.465	15.441	1	3115800			34805	3231	24039	24124	35233	35233					-0.018117243160759244
SALEHSIQY	9	Unmodified	_SALEHSIQY_					0	0	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2591552734375	2	524.258914	1046.50327	0.4064	0.00021306	0.28875	0.00015138	0.69514	0.00036444	524.2590126184084	31.619	0.19278	31.619	31.515	31.708	0					20	7	4	0	0	0	0.17854	1	10482	10482		64.207	5.4253	1	441220			34806	3231	24039	24124	35234	35234					-0.018117243160759244
SALEHSIQY	9	Unmodified	_SALEHSIQY_					0	0	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2590942382812	2	524.258914	1046.50327	0.073725	3.8651E-05	0.64886	0.00034017	0.72258	0.00037882	524.2594157650709	31.835	0.44511	31.835	31.5	31.945	0					17	9	3	0	0	0	0.063823	1	12029	12029		90.37	16.115	1	2248200			34807	3231	24039	24124	35235	35235					-0.018117243160759244
SALEKSLAV	9	Unmodified	_SALEKSLAV_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000470192.1_9:69256791-69261296:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2684326171875	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.7	1	32.7	32.2	33.2	0								0	0	0	0.30009	1	12031	12031		35.152	0.97948	1				34808	4097	24040	24125	35236	35236					0.06134651694674176
SALGAKAVAR	10	Unmodified	_SALGAKAVAR_					0	0	0			REV__ENSG00000077420|ENST00000376236|APBB1IP	REV__ENSG00000077420|ENST00000376236|APBB1IP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2878723144531	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.251	1	13.251	12.751	13.751	0								0	0	0	0.41253	1	2654	2654		26.693	0	1		+		34809	13262	24041	24126	35237	35237					0.0874858239999412
SALGAPSKS	9	Unmodified	_SALGAPSKS_					0	0	0		nc|ENSG00000089225|Q99593-2|TBX5;TBX5|p.E486*|1|0.4|ENSG00000089225|chr12:114355634-114355635|-/G|frameshift_variant;ENSG00000089225|ENST00000405440|TBX5	nc|ENSG00000089225|Q99593-2|TBX5	nc|ENSG00000089225|Q99593-2|TBX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.22393798828125	2	409.224342	816.434132	-1.4126	-0.00057806	1.114	0.00045588	-0.29855	-0.00012217	409.22467911038234	16.747	0.13564	16.747	16.673	16.808	0					9	5	2	0	0	0	0.19605	1	4080	4080		62.107	3.3255	1	75088			34810	1809	24042	24127	35238	35238					0.0185723645500957
SALGGKRY	8	Unmodified	_SALGGKRY_					0	0	0			REV__nc|ENSG00000136059|O15195-2|VILL	REV__nc|ENSG00000136059|O15195-2|VILL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.240478515625	2	426.240327	850.466101	0.28542	0.00012166	0.43255	0.00018437	0.71797	0.00030603	426.2404973264681	17.882	0.089664	17.882	17.801	17.89	0					4	2	2	0	0	0	0.67394	1	4351	4351		37.159	8.0096	1	105280	+		34811	14844	24043	24128	35239	35239					0.0348864892880556
SALGSSSYK	9	Unmodified	_SALGSSSYK_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.22686767578125	2	450.227082	898.439611	0.63204	0.00028456	-1.1847	-0.0005334	-0.55269	-0.00024884	450.22659507319815	20.705	0.20603	20.705	20.61	20.816	0					7	4	2	0	0	0	0.40353	1	6478	6478		41.427	3.6151	1	1060700			34812	3294	24044	24129	35240	35240					-0.01367084753189829
SALGSSSYK	9	Unmodified	_SALGSSSYK_					0	0	0		RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2270812988281	2	450.227082	898.439611	-0.10021	-4.5118E-05	-0.39798	-0.00017918	-0.49819	-0.0002243	450.22689467980234	20.587	0.16655	20.587	20.529	20.696	0					6	3	2	0	0	0	0.013878	1	6707	6707		132.76	47.842	1	374670			34813	3294	24044	24129	35241	35241					-0.01367084753189829
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.760986328125	2	480.761092	959.507631	-0.16272	-7.823E-05	-0.323	-0.00015529	-0.48572	-0.00023352	480.7608529936134	40.101	0.23706	40.101	40.006	40.243	0					15	9	2	0	0	0	0.16002	1	15276	15276		66.429	0	1	352890			34814	8917	24045	24130	35242	35242					0.026257848974864828
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.27264404296875	2	480.761092	959.507631	0.6785	0.0003262	-1.3409	-0.00064463	-0.66235	-0.00031843	480.76032509472526	40.082	0.2627	40.082	39.992	40.254	0					13	9	2	0	0	0	0.19605	1	15767	15767		62.107	0	1	447470			34815	8917	24045	24130	35243	35243					0.026257848974864828
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7606201171875	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.087	1	40.087	39.587	40.587	0								0	0	0	0.22284	1	15788	15788		47.657	0	1				34816	8917	24045	24130	35244	35244					0.026257848974864828
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.76068115234375	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.885	1	39.885	39.385	40.385	0								0	0	0	0.2591	1	14202	14202		42.396	0	1				34817	8917	24045	24130	35245	35245					0.026257848974864828
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141|SGK1;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	ENST00000367855.7_1_6:134492115-134495951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7610168457031	2	480.761092	959.507631	0.92308	0.00044378	-1.2516	-0.00060172	-0.32853	-0.00015794	480.7603080397101	40.009	0.19042	40.009	39.957	40.147	0					8	4	3	0	0	0	0.055856	1	15866	15866		93.195	0	1	398470			34818	8917	24045	24130	35246	35246					0.026257848974864828
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2900695800781	2	491.290017	980.565481	-0.1468	-7.2121E-05	0.051757	2.5427E-05	-0.095042	-4.6693E-05	491.2904118219909	27.736	0.15054	27.736	27.642	27.792	0					8	4	2	0	0	0	0.28504	1	8587	8587		51.528	15.081	1	100070			34819	7209	24046	24131	35247	35247					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.28985595703125	2	491.290017	980.565481	0.80897	0.00039744	-2.3758	-0.0011672	-1.5668	-0.00076975	491.2898829043646	28.007	0.76135	28.007	27.501	28.262	0					42	18	4	0	0	0	0.082776	1	9859	9859		83.647	21.54	1	1102200			34820	7209	24046	24131	35248	35248					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.8623352050781	3	327.862437	980.565481	0.52881	0.00017338	-1.1566	-0.00037921	-0.6278	-0.00020583	327.86205927287824	28.003	0.20916	28.003	27.912	28.121	0					14	5	4	0	0	0	0.28897	1	9852	9852		76.17	29.713	1	660170			34821	7209	24046	24131	35249	35249					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.289306640625	2	491.290017	980.565481	-1.2599	-0.00061899	2.9728	0.0014605	1.7129	0.00084153	491.29164886071885	27.765	0.23194	27.765	27.676	27.908	0					11	8	2	0	0	0	0.19952	1	8880	8880		61.691	19.295	1	110970			34822	7209	24046	24131	35250	35250					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.28997802734375	2	491.290017	980.565481	0.58499	0.0002874	1.8457	0.00090678	2.4307	0.0011942	491.29128778721685	28.001	0.68542	28.001	27.747	28.432	0					31	14	3	0	0	0	0.41958	1	10222	10222		40.058	5.8856	1	687490			34823	7209	24046	24131	35251	35251					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.86248779296875	3	327.862437	980.565481	0.55069	0.00018055	-0.45229	-0.00014829	0.098404	3.2263E-05	327.8622931016852	27.987	0.29504	27.987	27.831	28.126	0					18	6	4	0	0	0	0.28897	1	10213	10213		76.17	31.147	1	1545800			34824	7209	24046	24131	35252	35252					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.29022216796875	2	491.290017	980.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.817	1	27.817	27.317	28.317	0								0	0	0	0.20989	1	9150	9150		49.536	13.089	1				34825	7209	24046	24131	35253	35253					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2893981933594	2	491.290017	980.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.936	1	27.936	27.436	28.436	0								0	0	0	0.058887	1	10061	10061		83.647	37.675	1				34826	7209	24046	24131	35254	35254					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant;ENSG00000187688|ENST00000338560|TRPV2	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	TRPV2|p.I444Sfs*23|3|0.39|ENSG00000187688|chr17:16427521-16427521|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2900695800781	2	491.290017	980.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.977	1	27.977	27.477	28.477	0								0	0	0	0.11963	1	10080	10080		66.962	12.186	1				34827	7209	24046	24131	35255	35255					0.07442046822893644
SALHKFTELM	10	Unmodified	_SALHKFTELM_					0	0	0			REV__ZNF556|p.S52Vfs*20|1|0.05|ENSG00000172000|chr19:2876116-2876116|A/-|frameshift_variant	REV__ZNF556|p.S52Vfs*20|1|0.05|ENSG00000172000|chr19:2876116-2876116|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.8057250976562	2	588.807716	1175.60088	0.16006	9.4247E-05	-2.9155	-0.0017167	-2.7555	-0.0016224	588.8058122459962	39.114	0.10118	39.114	39.059	39.16	0					6	4	2	0	0	0	0.50881	1	14880	14880		44.377	6.5657	1	57270	+		34828	16444	24047	24132	35256	35256					0.020103412883827332
SALIEENPE	9	Unmodified	_SALIEENPE_					0	0	0		ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF;CARF|p.T694A|1|0.18|ENSG00000138380|chr2:202983526-202983526|A/G|missense_variant	ENSG00000138380|ENST00000438828|CARF	ENSG00000138380|ENST00000438828|CARF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2432556152344	2	501.242929	1000.47131	1.1214	0.00056208	-0.096736	-4.8488E-05	1.0246	0.00051359	501.24350628249664	33.099	0.69582	33.099	33.004	33.7	0					65	14	6	0	0	0	0.27249	1	12775	12775		52.937	3.4952	1	156850000			34829	4251	24048	24133	35257	35257					-0.028911367899013385
SALINKTK	8	Unmodified	_SALINKTK_					0	0	0			REV__PDE6A|p.R582Afs*19|1|0.45|ENSG00000132915|chr5:149886360-149886361|-/T|frameshift_variant	REV__PDE6A|p.R582Afs*19|1|0.45|ENSG00000132915|chr5:149886360-149886361|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.77117919921875	2	437.77146	873.528367	-0.27935	-0.00012229	0.42556	0.0001863	0.14622	6.4009E-05	437.7716336708156	18.104	0.10712	18.104	18.026	18.133	0					5	3	2	0	0	0	0.69548	1	4461	4461		34.173	0	1	47113	+		34830	14684	24049	24134	35258	35258					0.0865437527713766
SALITCHLAH	10	Unmodified	_SALITCHLAH_					0	0	0			REV__nc|ENSG00000138663|Q9BT78-2|COPS4	REV__nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2794189453125	2	533.279126	1064.5437	2.021	0.0010778	-0.13525	-7.2127E-05	1.8858	0.0010056	533.2793644227614	32.205	0.11504	32.205	32.15	32.265	0					5	3	2	0	0	0	0.7005	1	11191	11191		21.96	1.013	1	36360	+		34831	14992	24050	24135	35259	35259					0.01400918802664819
SALLAGNL	8	Unmodified	_SALLAGNL_					0	0	0		ENST00000368660.1_1_1:153751554-153752475:+|nuORF;ENST00000483574.6_1_1:153751589-153752475:+|nuORF;nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3	ENST00000368660.1_1_1:153751554-153752475:+|nuORF	ENST00000368660.1_1_1:153751554-153752475:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.723876953125	2	379.723978	757.433404	-0.13347	-5.0683E-05	-0.026865	-1.0201E-05	-0.16034	-6.0884E-05	379.723957163213	21.44	0.5735	21.44	21.246	21.82	0					26	13	3	0	0	0	0.59411	1	6186	6186		50.025	0	1	284880			34832	4566	24051	24136	35260	35260					0.044984418059470954
SALLLRDV	8	Unmodified	_SALLLRDV_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.771240234375	2	443.77146	885.528367	-0.36142	-0.00016039	-0.40623	-0.00018027	-0.76765	-0.00034066	443.77138714166824	41.371	0.23326	41.371	41.284	41.517	0					16	11	2	0	0	0	0.61938	1	15704	15704		45.952	0	1	63398	+		34833	14948	24052	24137	35261	35261					0.08102375277144347
SALNGGFQ	8	Unmodified	_SALNGGFQ_					0	0	0		ENSG00000182168|ENST00000453304|UNC5C;UNC5C|p.Q860Rfs*14|1|0.28|ENSG00000182168|chr4:95170206-95170206|G/-|frameshift_variant;nc|ENSG00000182168|O95185-2|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.1953430175781	2	397.195585	792.376617	0.091707	3.6426E-05	-0.13799	-5.481E-05	-0.046285	-1.8384E-05	397.19550330336506	16.871	0.21047	16.871	16.769	16.98	0					6	4	2	0	0	0	0.70055	1	4900	4900		33.516	5.2613	1	136020			34834	6881	24053	24138	35262	35262					-0.02787605750563671
SALPHLGSGSI	11	Unmodified	_SALPHLGSGSI_					0	0	0			REV__ENSG00000100625|ENST00000216513|SIX4	REV__ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.8573303222656	3	346.857463	1037.55056	-0.037377	-1.2964E-05	-0.37685	-0.00013071	-0.41423	-0.00014368	346.8573627738085	21	0.26616	21	20.891	21.158	0					12	5	4	0	0	0	0.7098	1	6779	6779		23.378	0	1	1135200	+		34835	13566	24055	24139	35263	35263					0.03328554954919127
SALPLKQA	8	Unmodified	_SALPLKQA_					0	0	0		nc|ENSG00000140563|Q6DN12-4|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2;MCTP2|p.L450Sfs*29|1|0.08|ENSG00000140563|chr15:94367650-94367651|-/AGTA|frameshift_variant;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	nc|ENSG00000140563|Q6DN12-4|MCTP2	nc|ENSG00000140563|Q6DN12-4|MCTP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.25311279296875	2	414.252903	826.491253	0.53515	0.00022169	-0.33864	-0.00014028	0.19651	8.1407E-05	414.25278901548535	28.186	0.8599	28.186	27.936	28.796	0					32	21	2	0	0	0	0.59411	1	10072	10072		50.025	2.3672	1	188880			34836	4397	24056	24140	35264	35264					0.07106703731369635
SALPLKQA	8	Unmodified	_SALPLKQA_					0	0	0		nc|ENSG00000140563|Q6DN12-4|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2;MCTP2|p.L450Sfs*29|1|0.08|ENSG00000140563|chr15:94367650-94367651|-/AGTA|frameshift_variant;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	nc|ENSG00000140563|Q6DN12-4|MCTP2	nc|ENSG00000140563|Q6DN12-4|MCTP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2530212402344	2	414.252903	826.491253	0.062853	2.6037E-05	-0.32413	-0.00013427	-0.26128	-0.00010823	414.2527486044407	28.336	1.0307	28.336	27.863	28.894	0					51	21	3	0	0	0	0.52345	1	10228	10228		57.811	9.8957	1	522790			34837	4397	24056	24140	35265	35265					0.07106703731369635
SALPLKQA	8	Unmodified	_SALPLKQA_					0	0	0		nc|ENSG00000140563|Q6DN12-4|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2;MCTP2|p.L450Sfs*29|1|0.08|ENSG00000140563|chr15:94367650-94367651|-/AGTA|frameshift_variant;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	nc|ENSG00000140563|Q6DN12-4|MCTP2	nc|ENSG00000140563|Q6DN12-4|MCTP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2532958984375	2	414.252903	826.491253	0.095165	3.9423E-05	-0.21683	-8.9824E-05	-0.12167	-5.0402E-05	414.25295980245204	28.179	0.5937	28.179	27.838	28.432	0					25	14	2	0	0	0	0.63077	2	9368	9194;9368		44.117	8.4985	1	85053			34838	4397	24056	24140	35266;35267	35267					0.07106703731369635
SALPNPPALK	10	Unmodified	_SALPNPPALK_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341491699219	3	336.53432	1006.58113	0.24138	8.1234E-05	-0.31438	-0.0001058	-0.072999	-2.4567E-05	336.5341449025839	40.814	0.7192	40.814	40.563	41.282	0					53	38	2	0	0	0	0.67098	1	13106	13106		24.232	5.1283	1	89739			34839	720	24057	24141	35268	35268					0.07810333339944009
SALPNPPALK	10	Unmodified	_SALPNPPALK_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5345153808594	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.132	1	51.132	50.632	51.632	0								0	0	0	0.40446	1	19054	19054		27.047	1.4733	1				34840	720	24057	24141	35269	35269					0.07810333339944009
SALPNPPALK	10	Unmodified	_SALPNPPALK_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.465	1	28.465	27.965	28.965	0								0	0	0	0.4201	1	10316	10316		20.03	0	1				34841	720	24057	24141	35270	35270					0.07810333339944009
SALPNPPALK	10	Unmodified	_SALPNPPALK_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.825	1	41.825	41.325	42.325	0								0	0	0	0.4201	1	16658	16658		26.063	6.9599	1				34842	720	24057	24141	35271	35271					0.07810333339944009
SALSDLHAHK	10	Unmodified	_SALSDLHAHK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7861938476562	2	539.78563	1077.55671	-0.083415	-4.5026E-05	0.65377	0.0003529	0.57036	0.00030787	539.7860606640892	20.212	0.06814	20.212	20.175	20.243	0					4	2	2	0	0	0	0.60281	1	5611	5611		33.922	9.4024	1	40379			34843	7254	24058	24142	35272	35272					0.02103073186435722
SALSPWPGV	9	Unmodified	_SALSPWPGV_					0	0	0		ENST00000592951.5_1_17:75450102-75450240:+|nuORF	ENST00000592951.5_1_17:75450102-75450240:+|nuORF	ENST00000592951.5_1_17:75450102-75450240:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2428283691406	2	457.242535	912.470518	-1.0279	-0.00046998	0.64637	0.00029555	-0.38149	-0.00017443	457.2427931655312	36.243	0.39777	36.243	36.129	36.527	0					51	20	4	0	0	0	0.35045	1	12256	12256		45.952	10.751	1	1644200			34844	10978	24059	24143	35273	35273					0.010781133517184571
SALSQNNQKL	10	Unmodified	_SALSQNNQKL_					0	0	0			REV__ENSG00000139174|ENST00000345127|PRICKLE1	REV__ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.200439453125	3	368.199889	1101.57784	-0.11035	-4.063E-05	1.1402	0.00041981	1.0298	0.00037917	368.20032374286683	27.159	0.086849	27.159	27.09	27.177	0					4	2	2	0	0	0	0.6796	1	8846	8846		17.833	0	1	64265	+		34845	15013	24060	24144	35274	35274					0.031110384952853565
SALSQTLLCH	10	Carbamidomethyl (C)	_SALSQTLLC(Carbamidomethyl (C))H_	SALSQTLLC(1)H		SALSQTLLC(45)H		0	1	0		nc|ENSG00000156500|Q6P4D5|PABIR3	nc|ENSG00000156500|Q6P4D5|PABIR3	nc|ENSG00000156500|Q6P4D5|PABIR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.1925354003906	3	377.193858	1128.55974	-2.1283	-0.00080279	-1.2635	-0.00047659	-3.3918	-0.0012794	377.1935041073336	26.633	0.2364	26.633	26.539	26.776	0					8	5	2	0	0	0	0.50287	1	8616	8616		45.022	7.514	1	80196			34846	11596	24061	24145	35275	35275	456				0.0006058024894173286
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.9114074707031	3	391.911568	1172.71287	2.069	0.00081088	-1.929	-0.00075598	0.14008	5.49E-05	391.91090330059853	20.226	0.12191	20.226	20.145	20.267	0					10	4	3	0	0	0	0.3077	1	5366	5366		61.765	17.125	1	259670			34847	6611	24062	24146	35276	35276					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	587.3642578125	2	587.363713	1172.71287	0.25573	0.00015021	0.27257	0.0001601	0.5283	0.0003103	587.3637015009515	20.233	0.11816	20.233	20.159	20.277	0					11	4	3	0	0	0	0.00056369	1	5384	5384		133.99	75.764	1	231370			34848	6611	24062	24146	35277	35277					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.91180419921875	3	391.911568	1172.71287	0.71435	0.00027996	-1.0362	-0.0004061	-0.32186	-0.00012614	391.91119351874266	20.586	0.19126	20.586	20.493	20.685	0					11	4	3	0	0	0	0.028034	1	6400	6400		115.91	53.749	1	2799200			34849	6611	24062	24146	35278	35278					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.3638916015625	2	587.363713	1172.71287	0.12364	7.2623E-05	0.1864	0.00010948	0.31004	0.00018211	587.3637872261213	20.559	0.14507	20.559	20.51	20.655	0					10	3	4	0	0	0	3.8085E-05	1	6406	6406		174.86	95.152	1	1349900			34850	6611	24062	24146	35279	35279					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.9114990234375	3	391.911568	1172.71287	0.13261	5.1971E-05	-0.29699	-0.00011639	-0.16438	-6.4423E-05	391.9114681822427	20.487	0.2653	20.487	20.38	20.645	0					12	5	3	0	0	0	0.10057	1	6632	6632		89.561	34.477	1	5618400			34851	6611	24062	24146	35280	35280					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3638305664062	2	587.363713	1172.71287	-0.1944	-0.00011419	0.5329	0.000313	0.33849	0.00019882	587.3641041395974	20.498	0.11596	20.498	20.396	20.512	0					6	2	3	0	0	0	0.056454	1	6643	6643		104.42	62.027	1	319480			34852	6611	24062	24146	35281	35281					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.9115905761719	3	391.911568	1172.71287	0.2221	8.7043E-05	-0.38342	-0.00015027	-0.16132	-6.3224E-05	391.9114102878244	20.332	0.14885	20.332	20.234	20.383	0					6	3	2	0	0	0	0.054579	1	5686	5686		102.95	52.163	1	153520			34853	6611	24062	24146	35282	35282					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.3638305664062	2	587.363713	1172.71287	-1.7464	-0.0010258	2.7211	0.0015983	0.97466	0.00057248	587.3653496043285	20.316	0.14382	20.316	20.251	20.395	0					7	3	3	0	0	0	0.041277	1	5690	5690		112.3	50.188	1	160430			34854	6611	24062	24146	35283	35283					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.9114990234375	3	391.911568	1172.71287	-0.67532	-0.00026466	0.35672	0.0001398	-0.3186	-0.00012486	391.91169923323855	20.503	0.21477	20.503	20.394	20.609	0					12	4	4	0	0	0	0.10057	1	6507	6507		89.561	32.412	1	1792900			34855	6611	24062	24146	35284	35284					0.13342518637023204
SALTMLGLCL	10	Carbamidomethyl (C)	_SALTMLGLC(Carbamidomethyl (C))L_	SALTMLGLC(1)L		SALTMLGLC(53)L		0	1	0			REV__nc|ENSG00000180663|Q9BXE9|VN1R3	REV__nc|ENSG00000180663|Q9BXE9|VN1R3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.19281005859375	3	360.192689	1077.55624	0.7278	0.00026215	-0.43219	-0.00015567	0.29561	0.00010648	360.19253089967987	20.527	0.19223	20.527	20.433	20.625	0					9	4	3	0	0	0	0.43008	1	6394	6394		52.937	16.49	1	626860	+		34856	21146	24063	24147	35285	35285	727				0.020561941506912262
SALTMLGLCL	10	Carbamidomethyl (C)	_SALTMLGLC(Carbamidomethyl (C))L_	SALTMLGLC(1)L		SALTMLGLC(51)L		0	1	0			REV__nc|ENSG00000180663|Q9BXE9|VN1R3	REV__nc|ENSG00000180663|Q9BXE9|VN1R3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.19281005859375	3	360.192689	1077.55624	-0.06573	-2.3676E-05	0.47749	0.00017199	0.41176	0.00014831	360.1928605099225	20.452	0.21548	20.452	20.344	20.56	0					7	4	2	0	0	0	0.44601	1	6508	6508		51.193	12.439	1	709170	+		34857	21146	24063	24147	35286	35286	727				0.020561941506912262
SALVPPRTL	9	Unmodified	_SALVPPRTL_					0	0	0			REV__ENST00000525963.5_1_11:22851094-22856569:+|nuORF	REV__ENST00000525963.5_1_11:22851094-22856569:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2974548339844	2	477.292559	952.570566	0.3951	0.00018858	-0.19756	-9.4292E-05	0.19754	9.4285E-05	477.29247570432955	30.746	1.7055	30.746	30.445	32.151	0					101	41	4	0	0	0	0.44593	1	11030	11030		37.812	3.639	1	1277800	+		34858	19990	24064	24148	35287	35287					0.09238350685518526
SALVVDPPIES	11	Unmodified	_SALVVDPPIES_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.2050476074219	3	376.204528	1125.59175	0.27476	0.00010337	1.1624	0.00043731	1.4372	0.00054068	376.2048589760794	25.427	0.51808	25.427	25.226	25.744	0					27	12	4	0	0	0	0.7326	1	8685	8685		21.78	0	1	647470	+		34859	13486	24065	24149	35288	35288					0.033982712037413876
SALVVPSILC	10	Unmodified	_SALVVPSILC_					0	0	0			REV__ENSG00000125384|ENST00000245457|PTGER2	REV__ENSG00000125384|ENST00000245457|PTGER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29058837890625	2	501.288628	1000.5627	2.9229	0.0014652	1.1287	0.00056579	4.0516	0.002031	501.2891031474993	48.693	0.47458	48.693	48.567	49.041	0					41	25	2	0	0	0	0.62149	1	19422	19422		26.693	2.4902	1	94509	+		34860	14427	24066	24150	35289	35289					0.06244455373746405
SALWQNKTK	9	Unmodified	_SALWQNKTK_					0	0	0			REV__NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant	REV__NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.2012939453125	3	359.201341	1074.58219	0.72495	0.0002604	-1.1928	-0.00042845	-0.46785	-0.00016805	359.20091301025343	33.624	0.43682	33.624	33.456	33.893	0					20	11	3	0	0	0	0.35021	1	12461	12461		45.972	12.051	1	459760	+		34861	21285	24067	24151	35290	35290					0.04788547708835722
SALYDVRTI	9	Unmodified	_SALYDVRTI_					0	0	0		nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	nc|ENSG00000175063|O00762-3|UBE2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.5271301269531	3	346.525713	1036.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.388	1	12.388	11.888	12.888	0								0	0	0	0.3368	1	2774	2774		27.882	4.3595	1				34862	11653	24068	24152	35291	35291					0.03849439097666618
SALYPVKK	8	Unmodified	_SALYPVKK_					0	0	0			REV__nc|ENSG00000136636|Q9Y597-3|KCTD3	REV__nc|ENSG00000136636|Q9Y597-3|KCTD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.27667236328125	2	453.276378	904.538203	-0.34162	-0.00015485	0.47535	0.00021547	0.13373	6.0617E-05	453.27649638250017	40.547	0.17528	40.547	40.464	40.639	0					14	10	2	0	0	0	0.61938	1	13100	13100		45.952	10.334	1	56007	+		34863	14871	24069	24153	35292	35292					0.08211563282520729
SALYTTKETI	10	Unmodified	_SALYTTKETI_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.2051696777344	3	376.204528	1125.59175	-0.1263	-4.7516E-05	1.5928	0.0005992	1.4665	0.00055169	376.20522883214574	25.256	0.22681	25.256	25.171	25.397	0					8	5	2	0	0	0	0.63073	1	8013	8013		35.152	1.2304	1	113640			34864	7514	24070	24154	35293	35293					0.0339827120371865
SAMDSTVAK	9	Unmodified	_SAMDSTVAK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2210388183594	2	455.220943	908.427332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.404	1	19.404	18.904	19.904	0								0	0	0	0.37233	1	5849	5849		19.104	2.6304	1				34865	1179	24071	24155	35294	35294					-0.030544444878728427
SAMDVAKAY	9	Unmodified	_SAMDVAKAY_					0	0	0		ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant;ENSG00000132623|ENST00000378392|ANKEF1	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2317810058594	2	478.23131	954.448068	0.015855	7.5822E-06	0.25665	0.00012274	0.2725	0.00013032	478.2317237675442	30.921	0.094135	30.921	30.879	30.973	0					7	4	2	0	0	0	0.28897	1	9897	9897		51.193	18.38	1	33241			34866	150	24072	24156	35295	35295					-0.030978541082276934
SAMDVAKAY	9	Unmodified	_SAMDVAKAY_					0	0	0		ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant;ENSG00000132623|ENST00000378392|ANKEF1	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2314758300781	2	478.23131	954.448068	-0.11657	-5.5747E-05	-0.50662	-0.00024228	-0.62319	-0.00029803	478.2312405197627	31.193	0.18824	31.193	31.093	31.281	0					8	4	3	0	0	0	0.078509	1	11732	11732		85.161	39.189	1	109480			34867	150	24072	24156	35296	35296					-0.030978541082276934
SAMDVAKAY	9	Unmodified	_SAMDVAKAY_					0	0	0		ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant;ENSG00000132623|ENST00000378392|ANKEF1	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	ANKEF1|p.Y712Sfs*5|1|0.07|ENSG00000132623|chr20:10054561-10054562|-/CCTGGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.23077392578125	2	478.23131	954.448068	-0.65197	-0.00031179	-0.070303	-3.3621E-05	-0.72227	-0.00034541	478.2313186851986	31.134	0.21453	31.134	31.027	31.241	0					6	4	2	0	0	0	0.035062	1	11598	11598		104.06	61.661	1	165920			34868	150	24072	24156	35297	35297					-0.030978541082276934
SAMEPLIESE	10	Unmodified	_SAMEPLIESE_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.1750183105469	3	369.17424	1104.50089	-0.22525	-8.3156E-05	1.4224	0.00052513	1.1972	0.00044197	369.17477423848936	29.956	0.26963	29.956	29.846	30.115	0					11	5	3	0	0	0	0.60281	1	11024	11024		33.922	4.7516	1	1332400	+		34869	16534	24073	24157	35298	35298					-0.04717940836053458
SAMERICEK	9	Unmodified	_SAMERICEK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.R2049Q|1|0.55|ENSG00000169710|chr17:82082026-82082026|C/T|missense_variant;FASN|p.A2037V|1|0.35|ENSG00000169710|chr17:82082062-82082062|G/A|missense_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7553100585938	2	533.754627	1065.4947	-0.47824	-0.00025526	0.86546	0.00046195	0.38722	0.00020668	533.7552637935271	22.328	0.25052	22.328	22.228	22.479	0					23	7	4	0	0	0	0.073657	1	6534	6534		86.882	33.945	1	731900			34870	6178	24074	24158	35299	35299					-0.03542737548605146
SAMERICEK	9	Unmodified	_SAMERICEK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.R2049Q|1|0.55|ENSG00000169710|chr17:82082026-82082026|C/T|missense_variant;FASN|p.A2037V|1|0.35|ENSG00000169710|chr17:82082062-82082062|G/A|missense_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7548217773438	2	533.754627	1065.4947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.528	1	22.528	22.028	23.028	0								0	0	0	0.001677	1	7638	7638		122.94	29.744	1				34871	6178	24074	24158	35300	35300					-0.03542737548605146
SAMERICEK	9	Unmodified	_SAMERICEK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.R2049Q|1|0.55|ENSG00000169710|chr17:82082026-82082026|C/T|missense_variant;FASN|p.A2037V|1|0.35|ENSG00000169710|chr17:82082062-82082062|G/A|missense_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7549438476562	2	533.754627	1065.4947	1.1174	0.00059644	-0.74733	-0.00039889	0.37011	0.00019755	533.7544820113709	22.383	0.37244	22.383	22.333	22.706	0					18	8	4	0	0	0	0.01942	1	6666	6666		122.94	44.675	1	570550			34872	6178	24074	24158	35301	35301					-0.03542737548605146
SAMERICEK	9	Unmodified	_SAMERICEK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.R2049Q|1|0.55|ENSG00000169710|chr17:82082026-82082026|C/T|missense_variant;FASN|p.A2037V|1|0.35|ENSG00000169710|chr17:82082062-82082062|G/A|missense_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7548828125	2	533.754627	1065.4947	1.8091	0.00096564	-1.6413	-0.00087608	0.16779	8.956E-05	533.753950346131	22.53	1.0647	22.53	22.321	23.385	0					43	21	4	0	0	0	0.022698	1	7494	7494		117.53	32.365	1	3982300			34873	6178	24074	24158	35302	35302					-0.03542737548605146
SAMESFIEK	9	Unmodified	_SAMESFIEK_					0	0	0		ENST00000527451.1_1_11:130773148-130776010:-|nuORF;ENSG00000120451|ENST00000265909|SNX19	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2511596679688	2	521.2497	1040.48485	1.4901	0.00077673	-0.026277	-1.3697E-05	1.4639	0.00076303	521.249867225711	34.859	0.096127	34.859	34.79	34.886	0					7	4	2	0	0	0	0.24334	1	11412	11412		56.434	3.0823	1	69321			34874	3171	24075	24159	35303	35303					-0.033776022823076346
SAMESFIEK	9	Unmodified	_SAMESFIEK_					0	0	0		ENST00000527451.1_1_11:130773148-130776010:-|nuORF;ENSG00000120451|ENST00000265909|SNX19	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2503051757812	2	521.2497	1040.48485	1.5005	0.00078215	-0.89686	-0.00046749	0.60366	0.00031466	521.249275914578	35.118	0.20679	35.118	35.033	35.24	0					9	5	2	0	0	0	0.21419	1	13138	13138		59.931	9.9062	1	321080			34875	3171	24075	24159	35304	35304					-0.033776022823076346
SAMESFIEK	9	Unmodified	_SAMESFIEK_					0	0	0		ENST00000527451.1_1_11:130773148-130776010:-|nuORF;ENSG00000120451|ENST00000265909|SNX19	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2498168945312	2	521.2497	1040.48485	0.37528	0.00019561	-0.021878	-1.1404E-05	0.3534	0.00018421	521.2497608696469	35.039	0.26563	35.039	34.93	35.196	0					9	5	2	0	0	0	0.04067	1	13500	13500		98.582	21.808	1	582040			34876	3171	24075	24159	35305	35305					-0.033776022823076346
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2544860839844	2	475.254785	948.495018	-0.0066049	-3.139E-06	-0.50792	-0.00024139	-0.51452	-0.00024453	475.25463540436886	32.38	0.2687	32.38	32.295	32.563	0					24	11	3	0	0	0	0.021015	1	10460	10460		120.31	40.593	1	460430			34877	3531	24076	24160	35306	35306					0.018710054429107004
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.25457763671875	2	475.254785	948.495018	0.3213	0.0001527	-0.99205	-0.00047148	-0.67074	-0.00031877	475.25442691769416	32.672	0.41138	32.672	32.543	32.954	0					32	10	5	0	0	0	0.021015	2	12007	12007;12101		120.31	35.39	1	3736900			34878	3531	24076	24160	35307;35308	35307					0.018710054429107004
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.254638671875	2	475.254785	948.495018	-1.5636	-0.00074313	0.80746	0.00038375	-0.75618	-0.00035938	475.2552542924188	32.439	0.27364	32.439	32.342	32.615	0					27	11	4	0	0	0	0.063171	1	10816	10816		90.601	24.172	1	514530			34879	3531	24076	24160	35309	35309					0.018710054429107004
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2545166015625	2	475.254785	948.495018	0.61956	0.00029445	-1.5999	-0.00076034	-0.9803	-0.00046589	475.2541438750363	32.643	0.27836	32.643	32.524	32.802	0					24	7	4	0	0	0	0.035106	1	12414	12414		104.01	19.098	1	3090800			34880	3531	24076	24160	35310	35310					0.018710054429107004
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2550354003906	2	475.254785	948.495018	-0.084557	-4.0186E-05	0.51326	0.00024393	0.4287	0.00020374	475.25512005380926	32.436	0.3223	32.436	32.327	32.65	0					20	10	3	0	0	0	0.12834	1	11259	11259		72.879	6.45	1	294590			34881	3531	24076	24160	35311	35311					0.018710054429107004
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2546691894531	2	475.254785	948.495018	-0.42309	-0.00020107	0.10842	5.1529E-05	-0.31466	-0.00014954	475.25489856192456	32.419	0.27273	32.419	32.314	32.587	0					19	8	3	0	0	0	0.04067	1	11269	11269		98.582	13.666	1	568740			34882	3531	24076	24160	35312	35312					0.018710054429107004
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2545166015625	2	475.254785	948.495018	-0.61075	-0.00029026	-0.09669	-4.5953E-05	-0.70744	-0.00033621	475.25485794200705	32.632	0.36815	32.632	32.472	32.84	0					20	7	4	0	0	0	0.029571	1	12308	12308		109.44	45.232	1	2118300			34883	3531	24076	24160	35313	35313					0.018710054429107004
SAMPNFASNK	10	Unmodified	_SAMPNFASNK_					0	0	0			REV__KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	REV__KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7548217773438	2	533.752941	1065.49133	3.388	0.0018084	0.020437	1.0908E-05	3.4084	0.0018193	533.7531821020702	22.513	0.46826	22.513	22.304	22.772	0					26	9	5	0	0	0	0.19191	1	7509	7509		80.455	12.961	1	1993500	+		34884	13056	24077	24161	35314	35314					-0.038796643309296996
SAMSNPRAM	9	Unmodified	_SAMSNPRAM_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7211608886719	2	482.720587	963.426621	0.046508	2.245E-05	-0.70006	-0.00033793	-0.65355	-0.00031548	482.72029597971874	22.321	0.27914	22.321	22.127	22.406	0					14	8	2	0	0	0	0.40353	1	6256	6256		41.427	6.2746	1	198820			34885	3956	24078	24162	35315	35315					-0.05655562408583137
SAMSNPRAM	9	Unmodified	_SAMSNPRAM_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7201843261719	2	482.720587	963.426621	0.57915	0.00027957	-2.0437	-0.00098653	-1.4645	-0.00070696	482.7198724740136	22.646	0.39264	22.646	22.384	22.777	0					24	9	4	0	0	0	0.04067	1	7363	7363		98.582	24.327	1	1202900			34886	3956	24078	24162	35316	35316					-0.05655562408583137
SAMSNPRAM	9	Unmodified	_SAMSNPRAM_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.72039794921875	2	482.720587	963.426621	-1.299	-0.00062705	-0.021574	-1.0414E-05	-1.3206	-0.00063747	482.7208973488679	22.301	0.27691	22.301	22.168	22.445	0					15	8	3	0	0	0	0.10506	1	6536	6536		78.264	27.071	1	173620			34887	3956	24078	24162	35317	35317					-0.05655562408583137
SAMSNPRAM	9	Unmodified	_SAMSNPRAM_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.72027587890625	2	482.720587	963.426621	0.68455	0.00033044	-2.205	-0.0010644	-1.5205	-0.00073396	482.7199156501041	22.556	0.31063	22.556	22.35	22.66	0					22	6	5	0	0	0	0.04067	1	7641	7641		98.582	30.097	1	1160900			34888	3956	24078	24162	35318	35318					-0.05655562408583137
SAMSNPRAM	9	Unmodified	_SAMSNPRAM_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7204284667969	2	482.720587	963.426621	-0.27769	-0.00013405	-0.94411	-0.00045574	-1.2218	-0.00058979	482.72060795772035	22.385	0.24169	22.385	22.246	22.488	0					14	5	4	0	0	0	0.27123	1	6647	6647		53.089	5.1734	1	225770			34889	3956	24078	24162	35319	35319					-0.05655562408583137
SAMSNPRAM	9	Unmodified	_SAMSNPRAM_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7203674316406	2	482.720587	963.426621	0.88869	0.00042899	-2.0748	-0.0010015	-1.1861	-0.00057254	482.71996516850464	22.53	0.36725	22.53	22.321	22.688	0					22	7	4	0	0	0	0.02953	1	7497	7497		109.48	24.119	1	1186800			34890	3956	24078	24162	35320	35320					-0.05655562408583137
SANCKLRK	8	Carbamidomethyl (C)	_SANC(Carbamidomethyl (C))KLRK_	SANC(1)KLRK		SANC(44)KLRK		0	1	0		ENSG00000163689|ENST00000482387|CFAP20DC;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC	ENSG00000163689|ENST00000482387|CFAP20DC	ENSG00000163689|ENST00000482387|CFAP20DC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	326.1824951171875	3	326.183404	975.528384	-0.66744	-0.00021771	-2.9229	-0.0009534	-3.5903	-0.0011711	326.18255005381116	14.224	0.077381	14.224	14.185	14.262	0					5	3	2	0	0	0	0.63077	1	3047	3047		44.117	12.587	1	60347			34891	5594	24079	24163	35321	35321	231				0.03964052005483154
SANDFQVFK	9	Unmodified	_SANDFQVFK_					0	0	0		ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2620239257812	2	528.261456	1054.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.78	1	36.78	36.28	37.28	0								0	0	0	0.12601	1	13897	13897		65.465	17.55	1				34892	6689;23161	24080	24164	35322	35322					-0.016714204534537203
SANDFQVFK	9	Unmodified	_SANDFQVFK_					0	0	0		ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.26171875	2	528.261456	1054.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.669	1	36.669	36.169	37.169	0								0	0	0	0.29356	1	14272	14272		36.447	2.2742	1				34893	6689;23161	24080	24164	35323	35323					-0.016714204534537203
SANECISVK	9	Unmodified	_SANECISVK_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7344665527344	2	475.734217	949.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.487	1	23.487	22.987	23.987	0								0	0	0	0.17415	1	7783	7783		54.722	12.326	1				34894	2759	24081	24165	35324	35324					-0.022867555965376596
SANELAVQK	9	Unmodified	_SANELAVQK_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2608947753906	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.054	1	21.054	20.554	21.554	0								0	0	0	0.23111	1	5982	5982		46.457	0.48454	1				34895	4695	24082	24166	35325	35325					0.02744579546526893
SANFSYNAL	9	Unmodified	_SANFSYNAL_					0	0	0		STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant;STK11IP|p.E522Rfs*80|1|0.11|ENSG00000144589|chr2:219608354-219608354|G/-|frameshift_variant;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7326965332031	2	493.732532	985.45051	0.63785	0.00031492	1.0098	0.00049855	1.6476	0.00081348	493.7328432556126	43.483	0.1032	43.483	43.416	43.52	0					7	5	2	0	0	0	0.18416	1	17002	17002		63.534	3.4156	1	98283			34896	4626	24083	24167	35326	35326					-0.04279682378921734
SANGAAIKK	9	Unmodified	_SANGAAIKK_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2532653808594	2	430.253434	858.492316	-0.5471	-0.00023539	0.0091103	3.9198E-06	-0.53799	-0.00023147	430.2535175776432	13.043	0.197	13.043	12.92	13.117	0					10	5	3	0	0	0	0.087861	1	2885	2885		82.241	10.945	1	785440			34897	3608	24084	24168	35327	35327					0.057409181002867626
SANSHNIAL	9	Unmodified	_SANSHNIAL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7378234863281	2	463.738148	925.461744	-0.70146	-0.00032529	0.37036	0.00017175	-0.3311	-0.00015354	463.73831308280165	26.2	0.25539	26.2	26.112	26.368	0					16	6	3	0	0	0	0.087861	1	8998	8998		82.241	16.437	1	1331700			34898	1145	24085	24169	35328	35328					-0.003968602847749025
SANSHNIAL	9	Unmodified	_SANSHNIAL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7380065917969	2	463.738148	925.461744	-1.0307	-0.00047795	0.56171	0.00026049	-0.46894	-0.00021746	463.73846800089103	26.206	0.30818	26.206	26.051	26.359	0					15	6	3	0	0	0	0.048471	1	9340	9340		95.815	35.521	1	844610			34899	1145	24085	24169	35329	35329					-0.003968602847749025
SANTAAFAK	9	Unmodified	_SANTAAFAK_					0	0	0		ENST00000514030.1_1_5:122153007-122163181:+|nuORF;nc|ENSG00000205302|O60749-2|SNX2;ENSG00000205302|ENST00000379516|SNX2	ENST00000514030.1_1_5:122153007-122163181:+|nuORF	ENST00000514030.1_1_5:122153007-122163181:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7295837402344	2	440.729792	879.445031	-0.054768	-2.4138E-05	-0.55935	-0.00024652	-0.61412	-0.00027066	440.72961972859275	20.087	0.19201	20.087	19.988	20.18	0					7	4	2	0	0	0	0.0067848	1	6161	6161		150.36	65.446	1	546930			34900	7743	24086	24170	35330	35330					0.000486388292756601
SANTNTVPK	9	Unmodified	_SANTNTVPK_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2456970214844	2	466.245806	930.47706	0.6622	0.00030875	0.74347	0.00034664	1.4057	0.00065539	466.24520437398024	16.221	0.36723	16.221	16.013	16.38	0					14	7	4	0	0	0	0.035106	1	4584	4584		104.01	24.301	1	934410			34901	5794	24087	24171	35331	35331					0.009040065124395369
SANTNTVPK	9	Unmodified	_SANTNTVPK_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.24658203125	2	466.245806	930.47706	-0.60818	-0.00028356	-0.011815	-5.5087E-06	-0.61999	-0.00028907	466.2458419259221	16.041	0.16458	16.041	15.941	16.106	0					8	5	2	0	0	0	0.16806	1	3708	3708		65.465	9.0316	1	75741			34902	5794	24087	24171	35332	35332					0.009040065124395369
SANTNTVPK	9	Unmodified	_SANTNTVPK_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2456359863281	2	466.245806	930.47706	0.65231	0.00030414	-0.20936	-9.7613E-05	0.44295	0.00020652	466.24530492203996	16.234	0.26897	16.234	16.031	16.3	0					13	5	3	0	0	0	0.13109	1	4469	4469		72.243	10.136	1	759270			34903	5794	24087	24171	35333	35333					0.009040065124395369
SAPAAKPKR	9	Unmodified	_SAPAAKPKR_					0	0	0		ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	309.1904602050781	3	309.190776	924.550499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31	1	31	30.5	31.5	0								0	0	0	0.39567	1	10234	10234		8.6937	1.9582	1				34904	7298	24088	24172	35334	35334					0.08520599745554591
SAPAGASEPPP	11	Unmodified	_SAPAGASEPPP_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7375793457031	2	490.737814	979.461075	0.78516	0.00038531	-1.4429	-0.0007081	-0.65776	-0.00032279	490.73716592453326	21.883	0.3162	21.883	21.772	22.089	0					15	6	3	0	0	0	0.74306	1	7204	7204		23.523	1.5628	1	962790			34905	3724	24089	24173	35335	35335					-0.02947699724472841
SAPASQASL	9	Unmodified	_SAPASQASL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	416.21380615234375	2	416.213975	830.413397	0.53602	0.0002231	-0.90593	-0.00037706	-0.36991	-0.00015396	416.21355874850093	25.982	0.51941	25.982	25.708	26.228	0					29	14	3	0	0	0	0.012231	1	7808	7808		136.27	48.514	1	315270			34906	4171	24090	24174	35336	35336					-0.008593539246589899
SAPASQASL	9	Unmodified	_SAPASQASL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.21405029296875	2	416.213975	830.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.969	1	25.969	25.469	26.469	0								0	0	0	0.15687	1	8109	8109		58.23	1.5089	1				34907	4171	24090	24174	35337	35337					-0.008593539246589899
SAPASQASL	9	Unmodified	_SAPASQASL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.2138977050781	2	416.213975	830.413397	0.066643	2.7738E-05	-0.39233	-0.00016329	-0.32568	-0.00013555	416.21378617052875	26.225	0.51021	26.225	25.983	26.493	0					18	10	2	0	0	0	0.078509	1	9313	9313		85.161	18.732	1	187900			34908	4171	24090	24174	35338	35338					-0.008593539246589899
SAPASQASL	9	Unmodified	_SAPASQASL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.21368408203125	2	416.213975	830.413397	0.085026	3.5389E-05	-0.41274	-0.00017179	-0.32772	-0.0001364	416.2138026955824	26.081	0.44419	26.081	25.789	26.233	0					13	8	2	0	0	0	0.048471	1	8284	8284		95.815	21.56	1	138200			34909	4171	24090	24174	35339	35339					-0.008593539246589899
SAPASQASL	9	Unmodified	_SAPASQASL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.2137756347656	2	416.213975	830.413397	-0.05891	-2.4519E-05	-0.25688	-0.00010692	-0.31579	-0.00013144	416.2138643301749	26.044	0.57512	26.044	25.778	26.353	0					24	11	3	0	0	0	0.032052	1	8299	8299		107.01	9.5348	1	632890			34910	4171	24090	24174	35340	35340					-0.008593539246589899
SAPASQASL	9	Unmodified	_SAPASQASL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.2138977050781	2	416.213975	830.413397	-0.3378	-0.0001406	-0.039411	-1.6404E-05	-0.37721	-0.000157	416.2139734075497	26.16	0.56961	26.16	25.949	26.519	0					30	11	4	0	0	0	0.0017279	1	9170	9170		176.09	52.098	1	1477800			34911	4171	24090	24174	35341	35341					-0.008593539246589899
SAPDNRPAL	9	Unmodified	_SAPDNRPAL_					0	0	0		ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1;nc|ENSG00000185499|P15941-5|MUC1	ENSG00000185499|ENST00000620103|MUC1	ENSG00000185499|ENST00000620103|MUC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7453918457031	2	470.745973	939.477394	0.15692	7.387E-05	-0.90093	-0.00042411	-0.74401	-0.00035024	470.74555832659286	23.707	0.45869	23.707	23.565	24.024	0					25	10	3	0	0	0	0.48389	1	7918	7918		34.173	3.8548	1	751460			34912	7083	24091	24175	35342	35342					0.005234262322687755
SAPDNRPAL	9	Unmodified	_SAPDNRPAL_					0	0	0		ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1;nc|ENSG00000185499|P15941-5|MUC1	ENSG00000185499|ENST00000620103|MUC1	ENSG00000185499|ENST00000620103|MUC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.74517822265625	2	470.745973	939.477394	0.55036	0.00025908	-1.3332	-0.00062762	-0.78288	-0.00036854	470.745327037162	23.631	0.51313	23.631	23.467	23.981	0					26	10	4	0	0	0	0.27249	1	8049	8049		52.937	3.4007	1	1231500			34913	7083	24091	24175	35343	35343					0.005234262322687755
SAPDPVSTL	9	Unmodified	_SAPDPVSTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.7290954589844	2	443.729458	885.444362	0.52596	0.00023338	-1.3773	-0.00061116	-0.85137	-0.00037778	443.7289234995118	38.659	0.19928	38.659	38.567	38.766	0					9	7	2	0	0	0	0.30951	1	15181	15181		49.442	12.282	1	86317			34914	1541	24092	24176	35344	35344					-0.0029420061041491863
SAPEARTL	8	Unmodified	_SAPEARTL_					0	0	0		ENST00000490310.1_1_1:149903106-149903271:-|nuORF;nc|ENSG00000014914|A4FU01-4|MTMR11;ENSG00000014914|ENST00000439741|MTMR11	ENST00000490310.1_1_1:149903106-149903271:-|nuORF	ENST00000490310.1_1_1:149903106-149903271:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.72967529296875	2	422.729792	843.445031	0.86414	0.0003653	-1.3527	-0.00057182	-0.48853	-0.00020652	422.72931366489905	21.517	0.41821	21.517	21.307	21.725	0					20	8	3	0	0	0	0.44767	1	7160	7160		65.465	16.024	1	976290			34915	1074	24093	24177	35345	35345					0.017046388292897063
SAPEPRVTL	9	Unmodified	_SAPEPRVTL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;CC2D1A|p.A219V|1|0.22|ENSG00000132024|chr19:13913546-13913546|C/T|missense_variant;ENST00000585896.5_1_19:14020678-14030767:+|nuORF;CC2D1A|p.P344Tfs*59|1|0.39|ENSG00000132024|chr19:13918916-13918917|-/C|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.27154541015625	2	485.271824	968.529095	-0.24483	-0.00011881	-0.11121	-5.3968E-05	-0.35604	-0.00017278	485.2717950986876	31.819	0.45374	31.819	31.685	32.139	0					29	11	3	0	0	0	0.36135	1	11612	11612		45.022	0.9054	1	1575300			34916	390	24094	24178	35346	35346					0.04357169926197457
SAPFVARAL	9	Unmodified	_SAPFVARAL_					0	0	0		ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.271484375	2	466.271627	930.528701	0.062555	2.9168E-05	0.081417	3.7963E-05	0.14397	6.713E-05	466.27155310462456	36.064	0.20122	36.064	35.897	36.098	0					12	9	2	0	0	0	0.56424	1	11810	11810		25.574	0.12388	1	69213			34917	2314	24095	24179	35347	35347					0.060657949969822766
SAPFVARAL	9	Unmodified	_SAPFVARAL_					0	0	0		ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2716369628906	2	466.271627	930.528701	-0.61756	-0.00028795	0.47751	0.00022265	-0.14005	-6.5301E-05	466.27179181821543	36.07	0.21327	36.07	35.954	36.167	0					12	7	2	0	0	0	0.35021	1	12886	12886		45.972	11.8	1	146480			34918	2314	24095	24179	35348	35348					0.060657949969822766
SAPFVARAL	9	Unmodified	_SAPFVARAL_					0	0	0		ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.271728515625	2	466.271627	930.528701	-2.2628	-0.0010551	2.0853	0.0009723	-0.17757	-8.2797E-05	466.27263850251046	36.064	0.18592	36.064	35.972	36.158	0					12	6	2	0	0	0	0.35021	1	12908	12908		45.972	3.4978	1	114210			34919	2314	24095	24179	35349	35349					0.060657949969822766
SAPGQPPAAM	10	Unmodified	_SAPGQPPAAM_					0	0	0		ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENST00000464676.5_1_3:133698382-133748739:-|nuORF	ENST00000462770.5_1_3:133661447-133748739:-|nuORF	ENST00000462770.5_1_3:133661447-133748739:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.72344970703125	2	463.723652	925.432752	0.6999	0.00032456	-0.95136	-0.00044117	-0.25147	-0.00011661	463.72323116311884	34.055	0.36128	34.055	33.95	34.311	0					16	8	3	0	0	0	0.49411	1	13080	13080		45.972	8.8131	1	1446700			34920	9747	24096	24180	35350	35350					-0.032947209054214
SAPHGPGLI	9	Unmodified	_SAPHGPGLI_					0	0	0		ENSG00000145192|ENST00000411641|AHSG;AHSG|p.A241Gfs*26|1|0.16|ENSG00000145192|chr3:186619898-186619899|-/G|frameshift_variant	ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.7346496582031	2	424.734877	847.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.678	1	26.678	26.178	27.178	0								0	0	0	0.30835	1	8418	8418		33.516	1.5607	1				34921	4657	24097	24181	35351	35351					0.025372465545160594
SAPHSSSTSHL	11	Unmodified	_SAPHSSSTSHL_					0	0	0		BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.Q120Tfs*20|1|0.34|ENSG00000076108|chr12:56615393-56615394|-/C|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7623291015625	2	555.762352	1109.51015	1.8116	0.0010068	-1.4731	-0.00081868	0.33856	0.00018816	555.7614642763021	16.296	0.13919	16.296	16.236	16.375	0					6	3	2	0	0	0	0.47622	1	4392	4392		45.972	8.8131	1	146220			34922	278	24098	24182	35352	35352					-0.04022411435516915
SAPIRKQN	8	Unmodified	_SAPIRKQN_					0	0	0			REV__ENST00000398117.1_1_18:60986791-60986938:-|nuORF	REV__ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2640686035156	2	457.264333	912.514114	0.72159	0.00032996	-0.25762	-0.0001178	0.46397	0.00021216	457.26416022746054	46.056	0.71892	46.056	45.798	46.517	0					72	41	2	0	0	0	0.77246	1	17720	17720		24.203	2.2429	1	136770	+		34923	18922	24099	24183	35353	35353					0.054357228488470355
SAPKIFQAL	9	Unmodified	_SAPKIFQAL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7873229980469	2	487.78711	973.559667	-0.35955	-0.00017538	2.3512	0.0011469	1.9917	0.00097152	487.78846684177813	42.895	0.38058	42.895	42.666	43.047	0					24	19	2	0	0	0	0.1424	1	16232	16232		69.628	14.851	1	148580			34924	1351	24100	24184	35354	35354					0.0718294831123103
SAPKIFQAL	9	Unmodified	_SAPKIFQAL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7872619628906	2	487.78711	973.559667	0.62569	0.0003052	-0.48589	-0.00023701	0.1398	6.819E-05	487.78693908941483	42.836	0.43158	42.836	42.678	43.11	0					49	21	3	0	0	0	0.12834	1	16785	16785		72.879	17.375	1	1225900			34925	1351	24100	24184	35355	35355					0.0718294831123103
SAPKIFQAL	9	Unmodified	_SAPKIFQAL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7865295410156	2	487.78711	973.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.652	1	42.652	42.152	43.152	0								0	0	0	0.35377	1	14882	14882		24.519	1.4767	1				34926	1351	24100	24184	35356	35356					0.0718294831123103
SAPLGKMSL	9	Unmodified	_SAPLGKMSL_					0	0	0		KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant;ENSG00000122203|ENST00000298569|KIAA1191;ENST00000506668.5_1_5:175780428-175786529:-|nuORF	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.252197265625	2	452.252046	902.489538	-0.070102	-3.1704E-05	-0.28518	-0.00012897	-0.35529	-0.00016068	452.25187030288	35.109	0.39509	35.109	34.915	35.31	0					18	12	2	0	0	0	0.33044	1	12466	12466		47.657	1.7054	1	69930			34927	3255	24101	24185	35357	35357					0.0343932665111879
SAPLGKMSL	9	Unmodified	_SAPLGKMSL_					0	0	0		KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant;ENSG00000122203|ENST00000298569|KIAA1191;ENST00000506668.5_1_5:175780428-175786529:-|nuORF	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2518005371094	2	452.252046	902.489538	-0.41063	-0.00018571	0.21887	9.8986E-05	-0.19175	-8.672E-05	452.2519513261812	35.288	0.47012	35.288	35.081	35.552	0					14	9	2	0	0	0	0.48623	1	13573	13573		33.922	0.40605	1	178260			34928	3255	24101	24185	35358	35358					0.0343932665111879
SAPLGKMSL	9	Unmodified	_SAPLGKMSL_					0	0	0		KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant;ENSG00000122203|ENST00000298569|KIAA1191;ENST00000506668.5_1_5:175780428-175786529:-|nuORF	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2518005371094	2	452.252046	902.489538	0.87697	0.00039661	-1.3344	-0.00060349	-0.45745	-0.00020688	452.25133687333584	35.264	0.51926	35.264	35.015	35.535	0					26	10	3	0	0	0	0.21419	1	13591	13591		59.931	2.1195	1	573290			34929	3255	24101	24185	35359	35359					0.0343932665111879
SAPMTHSPI	9	Unmodified	_SAPMTHSPI_					0	0	0		MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant;MUC16|p.L2546Kfs*23|1|0.04|ENSG00000181143|chr19:8973503-8973504|-/CCTT|frameshift_variant;MUC16|p.I2885Dfs*9|1|0.28|ENSG00000181143|chr19:8972486-8972487|-/C|frameshift_variant;MUC16|p.N2936Tfs*6|1|0.17|ENSG00000181143|chr19:8972332-8972332|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.732177734375	2	470.731477	939.448402	-0.12486	-5.8776E-05	-0.65865	-0.00031005	-0.78351	-0.00036882	470.7310673159189	28.787	0.65971	28.787	28.331	28.991	0					16	13	2	0	0	0	0.13519	1	10603	10603		71.296	25.344	1	132900			34930	6840	24102	24186	35360	35360					-0.023744343883549845
SAPPLRHSW	9	Unmodified	_SAPPLRHSW_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.85369873046875	3	350.854164	1049.54066	-1.9909	-0.00069851	0.69412	0.00024353	-1.2968	-0.00045497	350.85444709722066	22	0.36471	22	21.837	22.202	0					13	8	2	0	0	0	0.55379	1	6478	6478		26.693	0	1	195700			34931	7542	24103	24187	35361	35361					0.01787411740178868
SAPPLSVPL	9	Unmodified	_SAPPLSVPL_					0	0	0			REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant	REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.76031494140625	2	440.760561	879.506569	-0.54256	-0.00023914	-0.017375	-7.6581E-06	-0.55994	-0.0002468	440.7605357293782	41.135	0.27071	41.135	40.985	41.256	0					12	6	2	0	0	0	0.50461	1	16308	16308		31.955	0	1	118440	+		34932	12666	24104	24188	35362	35362					0.06199570528565346
SAPPNLWI	8	Unmodified	_SAPPNLWI_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.743896484375	2	449.245078	896.475603	-0.30337	-0.00013629	-4.0802	-0.001833	-4.3836	-0.0019693	449.2435376821078	22.778	0.29455	22.778	22.65	22.945	0					13	9	2	0	0	0	0.77246	1	6460	6460		24.203	0	1	71169	+		34933	15624	24105	24189	35363	35363					0.023224172143159194
SAPQTVSK	8	Unmodified	_SAPQTVSK_					0	0	0			REV__ENST00000326775.9_1_7:99102345-99103658:+|nuORF	REV__ENST00000326775.9_1_7:99102345-99103658:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.2244567871094	2	409.224342	816.434132	0.63272	0.00025893	-0.87817	-0.00035937	-0.24544	-0.00010044	409.2240012934399	16.342	0.14456	16.342	16.247	16.392	0					8	3	3	0	0	0	0.39125	1	4396	4396		71.877	2.2498	1	211170	+		34934	18357	24106	24190	35364	35364					0.018572364549982012
SAPREQPL	8	Unmodified	_SAPREQPL_					0	0	0			REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2430114746094	2	449.243067	896.47158	-1.1816	-0.00053085	2.0131	0.00090438	0.83148	0.00037353	449.24456046271695	22.86	0.44057	22.86	22.63	23.071	0					33	15	3	0	0	0	0.61925	1	6741	6741		45.972	6.7194	1	90945	+		34935	16717	24107	24191	35365	35365					0.019203277206202074
SAPRHGSL	8	Unmodified	_SAPRHGSL_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.7222595214844	2	412.722301	823.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.445	1	15.445	14.945	15.945	0								0	0	0	1.7419	1	4224	4224		64.207	0	1				34936	2002	24108	24192	35366	35366					0.011271917519593444
SAPRHGSL	8	Unmodified	_SAPRHGSL_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.72216796875	2	412.722301	823.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.428	1	15.428	14.928	15.928	0								0	0	0	1.7419	1	4064	4064		49.442	0	1				34937	2002	24108	24192	35367	35367					0.011271917519593444
SAPRHGSL	8	Unmodified	_SAPRHGSL_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.7221374511719	2	412.722301	823.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.41	1	15.41	14.91	15.91	0								0	0	0	1.7419	1	4055	4055		60.118	0	1				34938	2002	24108	24192	35368	35368					0.011271917519593444
SAPRSFSPSL	10	Unmodified	_SAPRSFSPSL_					0	0	0			REV__ENSG00000103550|ENST00000219837|KNOP1	REV__ENSG00000103550|ENST00000219837|KNOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.77490234375	2	524.774731	1047.53491	1.8524	0.0009721	-1.3489	-0.00070785	0.50355	0.00026425	524.7743555575768	33.511	0.25252	33.511	33.456	33.708	0					11	6	3	0	0	0	0.56931	1	12405	12405		37.812	7.97	1	175580	+		34939	13689	24109	24193	35369	35369					0.013042684378660852
SAPRVGPVRWA	11	Unmodified	_SAPRVGPVRWA_					0	0	0			REV__nc|ENSG00000177234|Q8N1V8|LINC01561	REV__nc|ENSG00000177234|Q8N1V8|LINC01561	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	399.2273254394531	3	399.228001	1194.66217	-1.3111	-0.00052344	-0.23573	-9.4111E-05	-1.5469	-0.00061755	399.2279814984141	20.393	0.12098	20.393	20.326	20.447	0					6	3	2	0	0	0	0.69004	1	5682	5682		28.577	4.3449	1	119810	+		34940	21133	24110	24194	35370	35370					0.07263034102720667
SAPSAPAA	8	Unmodified	_SAPSAPAA_					0	0	0		ENSG00000122254|ENST00000261374|HS3ST2	REV__ENST00000397117.5_1_3:10362467-10362641:-|nuORF	REV__ENST00000397117.5_1_3:10362467-10362641:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.17108154296875	2	336.171579	670.328604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.037	1	23.037	22.537	23.537	0								0	0	0	1.7419	1	6865	6865		28.254	0	1				34941	3257	24111	24195	35371	35371					-0.019746796706272107
SAPSRATAL	9	Unmodified	_SAPSRATAL_					0	0	0		nc|ENSG00000155729|Q6PI47-3|KCTD18;ENSG00000155729|ENST00000359878|KCTD18	nc|ENSG00000155729|Q6PI47-3|KCTD18	nc|ENSG00000155729|Q6PI47-3|KCTD18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2427673339844	2	437.243067	872.47158	0.24442	0.00010687	-1.0249	-0.00044812	-0.78047	-0.00034125	437.242729217691	21.102	0.4052	21.102	20.99	21.395	0					27	11	4	0	0	0	0.24334	1	5735	5735		56.434	12.057	1	1156000			34942	5137	24112	24196	35372	35372					0.030243277205954655
SAPSRATAL	9	Unmodified	_SAPSRATAL_					0	0	0		nc|ENSG00000155729|Q6PI47-3|KCTD18;ENSG00000155729|ENST00000359878|KCTD18	nc|ENSG00000155729|Q6PI47-3|KCTD18	nc|ENSG00000155729|Q6PI47-3|KCTD18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2428894042969	2	437.243067	872.47158	0.62248	0.00027218	-1.3446	-0.00058793	-0.72215	-0.00031576	437.2425665241639	21.446	0.78491	21.446	21.052	21.837	0					45	18	5	0	0	0	0.19952	1	6803	6803		61.691	3.4614	1	5149400			34943	5137	24112	24196	35373	35373					0.030243277205954655
SAPSRATAL	9	Unmodified	_SAPSRATAL_					0	0	0		nc|ENSG00000155729|Q6PI47-3|KCTD18;ENSG00000155729|ENST00000359878|KCTD18	nc|ENSG00000155729|Q6PI47-3|KCTD18	nc|ENSG00000155729|Q6PI47-3|KCTD18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2431335449219	2	437.243067	872.47158	-0.92524	-0.00040455	0.28067	0.00012272	-0.64457	-0.00028183	437.24318485849506	21.136	0.53026	21.136	20.862	21.393	0					34	16	4	0	0	0	0.28897	1	5992	5992		51.193	1.6567	1	1190400			34944	5137	24112	24196	35374	35374					0.030243277205954655
SAPSTQQVL	9	Unmodified	_SAPSTQQVL_					0	0	0		nc|ENSG00000106290|P49848-2|TAF6;nc|ENSG00000106290|P49848-4|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-2|TAF6	nc|ENSG00000106290|P49848-2|TAF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7483825683594	2	465.748182	929.481811	-0.67541	-0.00031457	0.19555	9.1078E-05	-0.47986	-0.00022349	465.74831440736534	31.597	0.54068	31.597	31.319	31.86	0					20	13	3	0	0	0	0.10915	1	11496	11496		77.318	7.69	1	221320			34945	11471	24113	24197	35375	35375					0.014248906551870277
SAPSTQQVL	9	Unmodified	_SAPSTQQVL_					0	0	0		nc|ENSG00000106290|P49848-2|TAF6;nc|ENSG00000106290|P49848-4|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-2|TAF6	nc|ENSG00000106290|P49848-2|TAF6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7482604980469	2	465.748182	929.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.269	1	31.269	30.769	31.769	0								0	0	0	0.22075	1	10349	10349		47.96	10.148	1				34946	11471	24113	24197	35376	35376					0.014248906551870277
SAPSTQQVL	9	Unmodified	_SAPSTQQVL_					0	0	0		nc|ENSG00000106290|P49848-2|TAF6;nc|ENSG00000106290|P49848-4|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-2|TAF6	nc|ENSG00000106290|P49848-2|TAF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.74798583984375	2	465.748182	929.481811	0.67101	0.00031252	-1.0166	-0.0004735	-0.34562	-0.00016097	465.7476337017311	31.508	0.57909	31.508	31.332	31.911	0					20	12	3	0	0	0	0.048471	1	11902	11902		95.815	5.0385	1	295330			34947	11471	24113	24197	35377	35377					0.014248906551870277
SAPTETHSL	9	Unmodified	_SAPTETHSL_					0	0	0		ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.72967529296875	2	471.729989	941.445425	-0.5981	-0.00028214	-0.13558	-6.3958E-05	-0.73368	-0.0003461	471.73000549037715	21.734	0.34901	21.734	21.641	21.99	0					14	8	3	0	0	0	0.17854	1	6959	6959		64.207	3.2353	1	692730			34948	7018	24114	24198	35378	35378					-0.027639862415185235
SAPTETHSL	9	Unmodified	_SAPTETHSL_					0	0	0		ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.72979736328125	2	471.729989	941.445425	0.58936	0.00027802	-1.0626	-0.00050124	-0.47319	-0.00022322	471.7295302849595	21.667	0.31667	21.667	21.509	21.825	0					15	6	4	0	0	0	0.087861	1	7209	7209		82.241	36.268	1	1077500			34949	7018	24114	24198	35379	35379					-0.027639862415185235
SAPTETHSL	9	Unmodified	_SAPTETHSL_					0	0	0		ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7296142578125	2	471.729989	941.445425	0.59296	0.00027972	-1.0071	-0.00047507	-0.41412	-0.00019535	471.7294790238271	21.681	0.26738	21.681	21.522	21.789	0					13	5	4	0	0	0	0.19605	1	7084	7084		62.107	27.935	1	911720			34950	7018	24114	24198	35380	35380					-0.027639862415185235
SAPVGAQL	8	Unmodified	_SAPVGAQL_					0	0	0		nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;MST1R|p.S761Pfs*11|1|0.43|ENSG00000164078|chr3:49896794-49896800|ACCAGGT/-|frameshift_variant;MST1R|p.G755Vfs*19|3|0.19|ENSG00000164078|chr3:49896810-49896810|C/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.7083435058594	2	371.708328	741.402104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.56	1	31.56	31.06	32.06	0								0	0	0	1.7419	1	11912	11912		40.573	8.6178	1				34951	5650	24115	24199	35381	35381					0.021058687718550573
SAPYGRITL	9	Unmodified	_SAPYGRITL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2741394042969	2	489.274367	976.53418	-0.43295	-0.00021183	-0.16018	-7.8371E-05	-0.59313	-0.0002902	489.2742181537541	36.9	0.79807	36.9	36.663	37.462	0					58	22	4	0	0	0	0.28504	1	13938	13938		51.528	1.5032	1	6682000			34952	8095;1279	24116	24200	35382	35382					0.04497473788796924
SAPYGRITL	9	Unmodified	_SAPYGRITL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2738037109375	2	489.274367	976.53418	-1.1625	-0.0005688	0.21892	0.00010711	-0.94363	-0.00046169	489.2745253741327	36.699	0.16117	36.699	36.603	36.764	0					15	8	3	0	0	0	0.58342	1	12427	12427		23.523	1.5628	1	82573			34953	8095;1279	24116	24200	35383	35383					0.04497473788796924
SAQDFASRAK	10	Unmodified	_SAQDFASRAK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1;ENSG00000062716|ENST00000262291|VMP1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7783813476562	2	540.775262	1079.53597	0.99996	0.00054076	2.3361	0.0012633	3.3361	0.0018041	540.7770626321199	19.243	0.070862	19.243	19.186	19.256	0					4	2	2	0	0	0	0.45669	1	4935	4935		50.034	2.074	1	87993			34954	22512	24117	24201	35384	35384					-0.0006151719326226157
SAQDFASRAK	10	Unmodified	_SAQDFASRAK_					0	0	0		TAOK1-VMP1|1|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1;ENSG00000062716|ENST00000262291|VMP1	TAOK1-VMP1|1|fusion	TAOK1-VMP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7757568359375	2	540.775262	1079.53597	-0.12755	-6.8978E-05	1.8567	0.0010041	1.7291	0.00093508	540.7764801955527	19.24	0.1001	19.24	19.176	19.276	0					6	3	2	0	0	0	0.28855	1	5178	5178		68.626	25.762	1	145420			34955	22512	24117	24201	35385	35385					-0.0006151719326226157
SAQDRTDLLN	10	Unmodified	_SAQDRTDLLN_					0	0	0		ENSG00000165457|ENST00000298223|FOLR2	ENSG00000165457|ENST00000298223|FOLR2	ENSG00000165457|ENST00000298223|FOLR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	378.1914978027344	3	378.191282	1131.55202	-2.134	-0.00080707	3.2422	0.0012262	1.1082	0.00041909	378.1925068665715	13.381	0.056701	13.381	13.345	13.401	0					5	3	2	0	0	0	0.65051	1	2685	2685		28.081	2.0181	1	61269			34956	5796	24118	24202	35386	35386					-0.008498557469692969
SAQGKPLAL	9	Unmodified	_SAQGKPLAL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.763427734375	2	442.763635	883.512717	0.57774	0.0002558	-0.86123	-0.00038132	-0.28349	-0.00012552	442.7631424437196	28.056	0.33776	28.056	27.924	28.262	0					15	8	3	0	0	0	0.10915	1	9864	9864		77.318	29.66	1	245530			34957	2021	24119	24203	35387	35387					0.06630088760061881
SAQGKPLAL	9	Unmodified	_SAQGKPLAL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7633972167969	2	442.763635	883.512717	-0.26175	-0.0001159	-0.582	-0.00025769	-0.84376	-0.00037359	442.76352849853134	28.002	0.34387	28.002	27.863	28.207	0					12	7	3	0	0	0	0.25716	1	10185	10185		54.776	7.119	1	120170			34958	2021	24119	24203	35388	35388					0.06630088760061881
SAQGKPLAL	9	Unmodified	_SAQGKPLAL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.76361083984375	2	442.763635	883.512717	-0.50651	-0.00022427	0.27317	0.00012095	-0.23335	-0.00010332	442.76369728601986	28.018	0.36398	28.018	27.813	28.177	0					12	7	2	0	0	0	0.12834	1	10089	10089		72.879	19.943	1	242430			34959	2021	24119	24203	35389	35389					0.06630088760061881
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;NDUFS1-RBM39|2|fusion;NDUFS1-RBM39|1|fusion;NDUFS1-RBM39|4|fusion;NDUFS1-RBM39|3|fusion;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.25592041015625	2	483.256174	964.497795	0.057585	2.7828E-05	-0.97291	-0.00047017	-0.91533	-0.00044234	483.2556986646263	19.763	0.24469	19.763	19.695	19.939	0					18	7	4	0	0	0	0.017421	1	5178	5178		126.24	62.035	1	528600			34960	3696	24120	24204	35390	35390					0.014125968920893683
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;NDUFS1-RBM39|2|fusion;NDUFS1-RBM39|1|fusion;NDUFS1-RBM39|4|fusion;NDUFS1-RBM39|3|fusion;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.25592041015625	2	483.256174	964.497795	-0.15093	-7.2937E-05	-0.40913	-0.00019772	-0.56006	-0.00027065	483.2560192054816	20.104	0.58154	20.104	19.852	20.433	0					18	12	3	0	0	0	0.015496	1	6189	6189		129.42	65.214	1	2449200			34961	3696	24120	24204	35391	35391					0.014125968920893683
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;NDUFS1-RBM39|2|fusion;NDUFS1-RBM39|1|fusion;NDUFS1-RBM39|4|fusion;NDUFS1-RBM39|3|fusion;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2557067871094	2	483.256174	964.497795	-0.56165	-0.00027142	0.039896	1.928E-05	-0.52175	-0.00025214	483.256173781249	19.804	0.18488	19.804	19.721	19.906	0					12	6	3	0	0	0	0.035062	1	5418	5418		104.06	54.032	1	491960			34962	3696	24120	24204	35392	35392					0.014125968920893683
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;NDUFS1-RBM39|2|fusion;NDUFS1-RBM39|1|fusion;NDUFS1-RBM39|4|fusion;NDUFS1-RBM39|3|fusion;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2559509277344	2	483.256174	964.497795	0.67892	0.00032809	-1.6678	-0.00080599	-0.98892	-0.0004779	483.2553788467891	20.02	0.268	20.02	19.91	20.178	0					9	5	3	0	0	0	0.032383	1	6437	6437		106.68	35.867	1	857110			34963	3696	24120	24204	35393	35393					0.014125968920893683
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;NDUFS1-RBM39|2|fusion;NDUFS1-RBM39|1|fusion;NDUFS1-RBM39|4|fusion;NDUFS1-RBM39|3|fusion;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.25592041015625	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.022	1	20.022	19.522	20.522	0								0	0	0	0.0026034	1	6425	6425		150.36	69.907	1				34964	3696	24120	24204	35394	35394					0.014125968920893683
SAQIRSSPNTE	11	Unmodified	_SAQIRSSPNTE_					0	0	0			REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.2946166992188	2	595.294016	1188.57348	0.19903	0.00011848	0.68296	0.00040656	0.88199	0.00052504	595.2943851318073	13.583	0.080736	13.583	13.544	13.624	0					4	2	2	0	0	0	0.33002	1	3129	3129		76.17	26.634	1	199670	+		34965	18334	24121	24205	35395	35395					-0.013264707182770508
SAQIVGPGP	9	Unmodified	_SAQIVGPGP_					0	0	0		ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;ENST00000587765.1_1_19:38282860-38283352:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1	ENST00000536027.1_1_16:71958181-71961713:+|nuORF	ENST00000536027.1_1_16:71958181-71961713:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2259826660156	2	413.226885	824.439217	-0.072855	-3.0106E-05	-0.26348	-0.00010888	-0.33633	-0.00013898	413.2267570198824	15.403	1.0877	15.403	15.182	16.27	0					56	37	2	0	0	0	0.43426	1	3379	3379		38.806	0	1	282350			34966	6877	24122	24206	35396	35396					0.019975403176204054
SAQLVWISK	9	Unmodified	_SAQLVWISK_					0	0	0		ENST00000398529.7_1_2:65325145-65331914:-|nuORF	ENST00000398529.7_1_2:65325145-65331914:-|nuORF	ENST00000398529.7_1_2:65325145-65331914:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2981567382812	2	516.297842	1030.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.967	1	38.967	38.467	39.467	0								0	0	0	0.17166	1	15363	15363		55.084	10.062	1				34967	9231	24123	24207	35397	35397					0.06706333339934645
SAQNTKFFK	9	Unmodified	_SAQNTKFFK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.5257568359375	3	357.525825	1069.55564	0.72031	0.00025753	-0.95804	-0.00034252	-0.23773	-8.4994E-05	357.52545139896046	22.212	0.66462	22.212	22.075	22.739	0					28	15	5	0	0	0	0.034359	1	7171	7171		120.87	73.211	1	1928800			34968	4370	24124	24208	35398	35398					0.023648588175319674
SAQNTKFFK	9	Unmodified	_SAQNTKFFK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7854614257812	2	535.785099	1069.55564	0.11511	6.1675E-05	0.27028	0.00014481	0.38539	0.00020649	535.7852108644735	21.883	0.10831	21.883	21.841	21.949	0					5	3	2	0	0	0	0.38666	1	6376	6376		42.864	4.0581	1	71319			34969	4370	24124	24208	35399	35399					0.023648588175319674
SAQNTKFFK	9	Unmodified	_SAQNTKFFK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7852783203125	2	535.785099	1069.55564	0.29154	0.0001562	0.0039055	2.0925E-06	0.29544	0.00015829	535.7850317378544	22.094	0.46217	22.094	21.989	22.451	0					16	9	2	0	0	0	0.099758	1	7437	7437		79.489	37.093	1	573770			34970	4370	24124	24208	35400	35400					0.023648588175319674
SAQNTKFFK	9	Unmodified	_SAQNTKFFK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7852172851562	2	535.785099	1069.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.004	1	22.004	21.504	22.504	0								0	0	0	0.30009	1	6480	6480		35.152	4.6484	1				34971	4370	24124	24208	35401	35401					0.023648588175319674
SAQPRPMVK	9	Unmodified	_SAQPRPMVK_					0	0	0		ENST00000400864.3_1_19:55236001-55309429:+|nuORF	ENST00000400864.3_1_19:55236001-55309429:+|nuORF	ENST00000400864.3_1_19:55236001-55309429:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.52325439453125	3	338.523538	1012.54878	-0.70261	-0.00023785	0.10876	3.6817E-05	-0.59386	-0.00020103	338.5236142894349	14.507	0.1487	14.507	14.456	14.604	0					9	6	2	0	0	0	0.50461	1	3146	3146		47.657	0	1	275810			34972	9248	24125	24209	35402	35402					0.04301222665299065
SAQREEPMAL	10	Unmodified	_SAQREEPMAL_					0	0	0		ENST00000493883.5_1_21:45553616-45561277:+|nuORF	ENST00000493883.5_1_21:45553616-45561277:+|nuORF	ENST00000493883.5_1_21:45553616-45561277:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.8529357910156	3	377.853612	1130.53901	-0.43299	-0.0001636	-2.43	-0.00091818	-2.863	-0.0010818	377.8528823090655	29.657	0.90897	29.657	29.549	30.458	0					51	18	5	0	0	0	0.56931	1	10878	10878		37.812	2.6333	1	4245100			34973	10092	24126	24210	35403	35403					-0.02104010130756251
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2518920898438	2	529.251089	1056.48762	0.47956	0.00025381	2.4777	0.0013113	2.9572	0.0015651	529.251510597296	31.313	0.41517	31.313	31.173	31.589	0					43	17	4	0	0	0	0.0093724	1	10025	10025		142.36	54.607	1	1323500			34974	4106	24127	24211	35404	35404					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2516479492188	2	529.251089	1056.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.501	1	31.501	31.001	32.001	0								0	0	0	0.0056259	1	11473	11473		154.01	49.265	1				34975	4106	24127	24211	35405	35405					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.251953125	2	529.251089	1056.48762	0.078855	4.1734E-05	1.0916	0.0005777	1.1704	0.00061944	529.2515015343552	31.35	0.43763	31.35	31.225	31.663	0					37	17	4	0	0	0	0.021035	1	10357	10357		120.27	53.843	1	1121000			34976	4106	24127	24211	35406	35406					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.25146484375	2	529.251089	1056.48762	0.44047	0.00023312	0.63034	0.00033361	1.0708	0.00056672	529.2516198662987	31.338	0.23746	31.338	31.24	31.477	0					20	9	3	0	0	0	0.067603	1	10354	10354		89.029	28.911	1	281860			34977	4106	24127	24211	35407	35407					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2517700195312	2	529.251089	1056.48762	1.7393	0.00092052	-0.84368	-0.00044652	0.8956	0.000474	529.2504698615124	31.564	0.53049	31.564	31.471	32.001	0					25	11	4	0	0	0	0.017741	1	11900	11900		125.71	54.417	1	6522800			34978	4106	24127	24211	35408	35408					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.25146484375	2	529.251089	1056.48762	0.28624	0.00015149	1.2106	0.0006407	1.4968	0.0007922	529.2513918580944	31.592	0.34043	31.592	31.454	31.795	0					17	7	4	0	0	0	0.0034376	1	11915	11915		166.07	66.696	1	1511400			34979	4106	24127	24211	35409	35409					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2516479492188	2	529.251089	1056.48762	3.4528	0.0018274	-1.7088	-0.00090436	1.744	0.00092301	529.2498747060542	31.54	0.75862	31.54	31.241	32	0					28	15	4	0	0	0	0.0034376	1	11789	11789		166.07	66.696	1	8155400			34980	4106	24127	24211	35410	35410					-0.03836010833151704
SAQSLAPAGAL	11	Unmodified	_SAQSLAPAGAL_					0	0	0			REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.18328857421875	3	329.181946	984.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.27	1	46.27	45.77	46.77	0								0	0	0	0.45674	1	18518	18518		20.03	1.4994	1		+		34981	13105	24128	24212	35411	35411					0.031128660635772576
SAQTERVPL	9	Unmodified	_SAQTERVPL_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.1856384277344	3	334.185579	999.534909	0.98435	0.00032895	-0.96737	-0.00032328	0.01698	5.6746E-06	334.18519360459715	15.754	0.17232	15.754	15.669	15.841	0					7	4	2	0	0	0	0.43426	1	4128	4128		37.812	0	1	46209			34982	5319	24129	24213	35412	35412					0.03512268437862076
SAQTERVPL	9	Unmodified	_SAQTERVPL_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.1855773925781	3	334.185579	999.534909	0.38556	0.00012885	-0.78358	-0.00026186	-0.39801	-0.00013301	334.1853394039834	15.745	0.26486	15.745	15.584	15.849	0					11	5	3	0	0	0	0.51817	1	4356	4356		30.318	0	1	445340			34983	5319	24129	24213	35413	35413					0.03512268437862076
SAQTGARAL	9	Unmodified	_SAQTGARAL_					0	0	0		DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant;DDX54|p.R734Lfs*97|1|0.27|ENSG00000123064|chr12:113161992-113161992|C/-|frameshift_variant;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54;DDX54|p.G271Afs*41|1|0.25|ENSG00000123064|chr12:113175098-113175098|C/-|frameshift_variant	DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant	DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.74072265625	2	437.740691	873.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.142	1	19.142	18.642	19.642	0								0	0	0	0.16453	1	5132	5132		56.434	5.2411	1				34984	764	24130	24214	35414	35414					0.025034435778479747
SAQVHIATK	9	Unmodified	_SAQVHIATK_					0	0	0		AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.S919Pfs*33|1|0.11|ENSG00000023516|chr13:42301498-42301498|T/-|frameshift_variant;AKAP11|p.N964Mfs*17|1|0.38|ENSG00000023516|chr13:42301633-42301633|A/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.7719421386719	2	477.771991	953.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.461	1	17.461	16.961	17.961	0								0	0	0	0.3063	1	4379	4379		33.922	11.962	1				34985	107	24131	24215	35415	35415					0.0508058964603606
SARARHEPL	9	Unmodified	_SARARHEPL_					0	0	0			REV__ENST00000330714.7_1_21:42751998-42754376:+|nuORF	REV__ENST00000330714.7_1_21:42751998-42754376:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.19219970703125	3	346.193068	1035.55738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.79	1	31.79	31.29	32.29	0								0	0	0	0.38667	1	10233	10233		14.865	6.1712	1		+		34986	18378	24132	24216	35416	35416					0.041019126261289784
SARDSVRPK	9	Unmodified	_SARDSVRPK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1;PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2845458984375	2	508.285797	1014.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.699	1	31.699	31.199	32.199	0								0	0	0	0.3119	1	10946	10946		32.812	0	1				34987	3166	24133	24217	35417	35417					0.050344929062816846
SARFVYEA	8	Unmodified	_SARFVYEA_					0	0	0		DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant;ENSG00000226372|ENST00000441525|DCAF8L1;DCAF8L1|p.L218Ffs*18|1|0.12|ENSG00000226372|chrX:27980681-27980682|-/A|frameshift_variant;DCAF8L1|p.M258Cfs*10|1|0.41|ENSG00000226372|chrX:27980564-27980564|G/-|frameshift_variant;nc|ENSG00000132716|Q5TAQ9-2|DCAF8;DCAF8|p.E292Mfs*23|1|0.07|ENSG00000132716|chr1:160237220-160237221|-/AT|frameshift_variant;DCAF8|p.E292Ffs*24|1|0.07|ENSG00000132716|chr1:160237221-160237222|-/CGAAT|frameshift_variant;ENSG00000132716|ENST00000368074|DCAF8	DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant;ENSG00000132716|ENST00000368074|DCAF8	DCAF8L1|p.R449Gfs*6|1|0.34|ENSG00000226372|chrX:27979990-27979990|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.73712158203125	2	471.737617	941.460681	-2.3911	-0.001128	1.6787	0.0007919	-0.71244	-0.00033609	471.7383620136858	30.618	0.49625	30.618	30.494	30.99	0					17	13	2	0	0	0	0.68432	1	10454	10454		35.618	0.41757	1	278000			34988	745;3812	24134	24218	35418	35418					-0.012390746536766528
SARIEYDAY	9	Unmodified	_SARIEYDAY_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1;ARFIP1|p.R271C|1|0.38|ENSG00000164144|chr4:152888152-152888152|C/T|missense_variant	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.257080078125	2	544.256371	1086.49819	1.8743	0.0010201	-1.0747	-0.00058489	0.7996	0.00043519	544.2557562794796	31.537	0.41564	31.537	31.253	31.668	0					14	10	3	0	0	0	0.19605	1	11501	11501		62.107	8.756	1	342760			34989	195	24135	24219	35419	35419					-0.04160028178716857
SARLSDTHP	9	Unmodified	_SARLSDTHP_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	328.50164794921875	3	328.501679	982.483208	0.54916	0.0001804	-0.74914	-0.00024609	-0.19998	-6.5692E-05	328.501488990816	22.836	0.21638	22.836	22.728	22.944	0					8	4	3	0	0	0	0.61124	1	7772	7772		13.454	13.454	1	585360	+		34990	15865	24136	24220	35420	35420					-0.00873475256059919
SARLVYSVL	9	Unmodified	_SARLVYSVL_					0	0	0		CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;ENSG00000149654|ENST00000537909|CDH22	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.86859130859375	3	336.53432	1006.58113	0.24126	8.1193E-05	-0.29703	-9.996E-05	-0.055767	-1.8768E-05	336.5342616258715	31.588	0.59873	31.588	31.248	31.847	0					37	26	2	0	0	0	0.55282	1	10193	10193		34.173	0	1	87893			34991	451	24137	24221	35421	35421					0.0781033333993264
SARLVYSVL	9	Unmodified	_SARLVYSVL_					0	0	0		CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;ENSG00000149654|ENST00000537909|CDH22	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5346374511719	3	336.53432	1006.58113	0.24141	8.1243E-05	-0.53319	-0.00017944	-0.29177	-9.8192E-05	336.53417146846755	36.752	0.56769	36.752	36.666	37.234	0					44	30	2	0	0	0	0.61124	1	12155	12155		18.262	0	1	82399			34992	451	24137	24221	35422	35422					0.0781033333993264
SARLVYSVL	9	Unmodified	_SARLVYSVL_					0	0	0		CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;ENSG00000149654|ENST00000537909|CDH22	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5344543457031	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.403	1	50.403	49.903	50.903	0								0	0	0	0.37821	1	18900	18900		18.262	0	1				34993	451	24137	24221	35423	35423					0.0781033333993264
SARPHCSPC	9	Unmodified	_SARPHCSPC_					0	0	0		ENST00000463784.5_1_5:131822753-131826344:-|nuORF;ENST00000493208.1_1_5:131825145-131826395:-|nuORF	ENST00000463784.5_1_5:131822753-131826344:-|nuORF	ENST00000463784.5_1_5:131822753-131826344:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.204345703125	2	479.205104	956.395655	-0.25939	-0.0001243	-0.8416	-0.0004033	-1.101	-0.0005276	479.2045602692632	51.908	0.28907	51.908	51.754	52.043	0					22	16	2	0	0	0	0.61124	1	18456	18456		19.997	2.6318	1	142470			34994	9763	24138	24222	35424	35424					-0.08428715722823199
SARPVAAAG	9	Unmodified	_SARPVAAAG_					0	0	0			REV__ENST00000431679.5_2_7:99195910-99202172:+|nuORF	REV__ENST00000431679.5_2_7:99195910-99202172:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2238464355469	2	400.224677	798.434801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.168	1	18.168	17.668	18.668	0								0	0	0	0.32356	1	5265	5265		30.504	0	1		+		34995	19169	24139	24223	35425	35425					0.027520758947048307
SARRFQKL	8	Unmodified	_SARRFQKL_					0	0	0			REV__ENST00000429090.5_2_3:69828145-69928374:+|nuORF	REV__ENST00000429090.5_2_3:69828145-69928374:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	335.8697204589844	3	335.869926	1004.58795	-0.042565	-1.4296E-05	-0.59975	-0.00020144	-0.64231	-0.00021573	335.869769802782	19.06	0.18855	19.06	18.975	19.164	0					5	4	2	0	0	0	0.73426	1	5116	5116		29.15	0	1	121320	+		34996	19142	24140	24224	35426	35426					0.08583691011187966
SARVTLAK	8	Unmodified	_SARVTLAK_					0	0	0		ENST00000377424.8_1_1:9129622-9129694:-|nuORF	ENST00000377424.8_1_1:9129622-9129694:-|nuORF	ENST00000377424.8_1_1:9129622-9129694:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.2659606933594	2	423.263802	844.513051	0.35941	0.00015213	3.8978	0.0016498	4.2572	0.0018019	423.265700417633	33.862	0.1135	33.862	33.808	33.922	0					7	4	2	0	0	0	0.64144	1	11057	11057		42.396	13.247	1	49582			34997	9052	24141	24225	35427	35427					0.08457508479943954
SASALFVQDH	10	Unmodified	_SASALFVQDH_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7635498046875	2	537.764363	1073.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.71	1	18.71	18.21	19.21	0								0	0	0	0.3805	1	5789	5789		36.447	4.9169	1				34998	1358	24142	24226	35428	35428					-0.019643219418185254
SASALLLW	8	Unmodified	_SASALLLW_					0	0	0		ENST00000366292.6_1_12:129299368-129299485:-|nuORF	ENST00000366292.6_1_12:129299368-129299485:-|nuORF	ENST00000366292.6_1_12:129299368-129299485:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7451171875	2	430.747453	859.480354	-2.8597	-0.0012318	-1.4806	-0.00063778	-4.3404	-0.0018696	430.7468267126169	23.981	0.20166	23.981	23.877	24.078	0					12	5	3	0	0	0	0.55361	1	7438	7438		54.765	4.7401	1	314220			34999	8891	24143	24227	35429	35429					0.04499301357088825
SASASLPTK	9	Unmodified	_SASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.2369384765625	2	431.23745	860.460347	0.16315	7.0358E-05	0.01933	8.3356E-06	0.18248	7.8694E-05	431.2374882884736	20.123	0.27782	20.123	19.901	20.179	0					12	8	2	0	0	0	0.10506	1	5306	5306		78.264	6.3863	1	56200			35000	4458	24144	24228	35430	35430					0.024535056264653576
SASASLPTK	9	Unmodified	_SASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.2369079589844	2	431.23745	860.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.123	1	20.123	19.623	20.623	0								0	0	0	0.14881	1	5568	5568		60.118	1.3363	1				35001	4458	24144	24228	35431	35431					0.024535056264653576
SASASLPTK	9	Unmodified	_SASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.2369079589844	2	431.23745	860.460347	0.19662	8.4789E-05	-0.4124	-0.00017784	-0.21578	-9.3053E-05	431.2373021296435	20.243	0.31944	20.243	19.932	20.251	0					12	7	2	0	0	0	0.38666	1	5583	5583		42.864	5.0528	1	64731			35002	4458	24144	24228	35432	35432					0.024535056264653576
SASCTVILK	9	Carbamidomethyl (C)	_SASC(Carbamidomethyl (C))TVILK_	SASC(1)TVILK		SASC(60)TVILK		0	1	0		ENST00000493307.1_1_7:150020428-150023055:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7680358886719	2	489.76806	977.521567	0.43445	0.00021278	-1.3423	-0.00065742	-0.90785	-0.00044464	489.7679651706422	26.183	0.17954	26.183	26.096	26.276	0					8	4	2	0	0	0	0.21263	1	9010	9010		60.118	14.166	1	155230			35003	9758	24145	24229	35433	35433	402				0.03190694334261934
SASDCFARK	9	Unmodified	_SASDCFARK_					0	0	0		ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7315368652344	2	492.732009	983.449465	-0.072165	-3.5558E-05	-0.66443	-0.00032738	-0.73659	-0.00036294	492.7317614578798	19.058	0.10187	19.058	18.993	19.095	0					6	3	2	0	0	0	0.27249	1	4862	4862		52.937	21.407	1	118500			35004	8392	24146	24230	35434	35434					-0.04292220019465276
SASDCFARK	9	Unmodified	_SASDCFARK_					0	0	0		ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7318115234375	2	492.732009	983.449465	-0.52857	-0.00026044	-0.51908	-0.00025577	-1.0476	-0.00051621	492.7319611178446	19.397	0.45197	19.397	19.294	19.746	0					20	10	3	0	0	0	0.048471	1	5854	5854		95.815	39.094	1	708890			35005	8392	24146	24230	35435	35435					-0.04292220019465276
SASDLRWLK	9	Unmodified	_SASDLRWLK_					0	0	0		ENST00000312037.5_1_5:149826506-149829126:-|nuORF;ENST00000407193.5_1_5:149826506-149829126:-|nuORF	ENST00000312037.5_1_5:149826506-149829126:-|nuORF	ENST00000312037.5_1_5:149826506-149829126:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2988891601562	2	538.298373	1074.58219	-0.26459	-0.00014243	1.1394	0.00061333	0.87478	0.0004709	538.2988942804149	33.464	0.18523	33.464	33.385	33.571	0					12	7	2	0	0	0	0.3269	1	11227	11227		32.812	0	1	92700			35006	8562	24147	24231	35436	35436					0.04788547708835722
SASDLRWLK	9	Unmodified	_SASDLRWLK_					0	0	0		ENST00000312037.5_1_5:149826506-149829126:-|nuORF;ENST00000407193.5_1_5:149826506-149829126:-|nuORF	ENST00000312037.5_1_5:149826506-149829126:-|nuORF	ENST00000312037.5_1_5:149826506-149829126:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2987670898438	2	538.298373	1074.58219	1.9056	0.0010258	-1.5025	-0.00080878	0.4031	0.00021699	538.2975202073702	33.65	0.16895	33.65	33.521	33.69	0					8	4	2	0	0	0	0.073657	1	12888	12888		80.455	27.366	1	602070			35007	8562	24147	24231	35437	35437					0.04788547708835722
SASDLRWLK	9	Unmodified	_SASDLRWLK_					0	0	0		ENST00000312037.5_1_5:149826506-149829126:-|nuORF;ENST00000407193.5_1_5:149826506-149829126:-|nuORF	ENST00000312037.5_1_5:149826506-149829126:-|nuORF	ENST00000312037.5_1_5:149826506-149829126:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.2013854980469	3	359.201341	1074.58219	-0.092622	-3.327E-05	0.14534	5.2205E-05	0.052713	1.8935E-05	359.20129790734273	33.455	0.26665	33.455	33.35	33.616	0					12	7	2	0	0	0	0.24095	1	11737	11737		56.721	3.7844	1	200860			35008	8562	24147	24231	35438	35438					0.04788547708835722
SASDVMSHK	9	Unmodified	_SASDVMSHK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2234802246094	2	481.224017	960.43348	-1.352	-0.00065062	1.6579	0.00079782	0.30589	0.0001472	481.22464323087473	16.512	0.16327	16.512	16.43	16.593	0					9	4	3	0	0	0	0.36892	1	4009	4009		44.377	5.1244	1	435100			35009	5184	24148	24232	35439	35439					-0.04831926256349561
SASDVMSHK	9	Unmodified	_SASDVMSHK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2237854003906	2	481.224017	960.43348	0.68456	0.00032943	-1.3119	-0.00063133	-0.62737	-0.00030191	481.22343334049845	16.721	0.15418	16.721	16.664	16.818	0					7	3	3	0	0	0	0.3269	1	4869	4869		47.96	7.1814	1	1931500			35010	5184	24148	24232	35440	35440					-0.04831926256349561
SASDVMSHK	9	Unmodified	_SASDVMSHK_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.22412109375	2	481.224017	960.43348	2.3496	0.0011307	-2.3883	-0.0011493	-0.038677	-1.8612E-05	481.22294212369036	16.722	0.16206	16.722	16.666	16.828	0					8	3	3	0	0	0	0.017421	1	4700	4700		126.24	60.777	1	2653200			35011	5184	24148	24232	35441	35441					-0.04831926256349561
SASGGAVL	8	Unmodified	_SASGGAVL_					0	0	0			REV__ENSG00000160785|ENST00000359511|SLC25A44	REV__ENSG00000160785|ENST00000359511|SLC25A44	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.17938232421875	2	331.179404	660.344254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.678	1	19.678	19.178	20.178	0								0	0	0	1.7419	1	6126	6126		44.531	0	1		+		35012	15763	24149	24233	35442	35442					0.0004960684642583146
SASGPRHL	8	Unmodified	_SASGPRHL_					0	0	0		ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	412.72235107421875	2	412.722301	823.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.196	1	15.196	14.696	15.696	0								0	0	0	1.7419	1	3415	3415		50.025	7.6284	1				35013	9336	24150	24234	35443	35443					0.01127191751936607
SASHAQGGAK	10	Unmodified	_SASHAQGGAK_					0	0	0			REV__ENST00000473451.1_1_3:49950446-49967283:-|nuORF	REV__ENST00000473451.1_1_3:49950446-49967283:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2313232421875	2	457.227948	912.441343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.233	1	15.233	14.733	15.733	0								0	0	0	0.34115	1	3430	3430		44.377	0.26039	1		+		35014	19505	24151	24235	35444	35444					-0.018380309445660714
SASHPMVGK	9	Unmodified	_SASHPMVGK_					0	0	0		PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant;nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;PARD3|p.S1335Lfs*15|1|0.17|ENSG00000148498|chr10:34111237-34111238|-/G|frameshift_variant;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3	PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant	PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.231201171875	2	457.231645	912.448736	-0.14975	-6.8468E-05	-1.0155	-0.00046432	-1.1653	-0.00053279	457.2313546531261	15.444	0.21097	15.444	15.339	15.55	0					8	4	3	0	0	0	0.019882	1	4233	4233		122.18	50.88	1	371260			35015	4837	24152	24236	35445	35445					-0.01099014668500331
SASHPMVGK	9	Unmodified	_SASHPMVGK_					0	0	0		PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant;nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;PARD3|p.S1335Lfs*15|1|0.17|ENSG00000148498|chr10:34111237-34111238|-/G|frameshift_variant;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3	PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant	PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2312927246094	2	457.231645	912.448736	-0.43454	-0.00019868	-0.26434	-0.00012086	-0.69887	-0.00031955	457.2314571674687	15.422	0.15683	15.422	15.314	15.471	0					6	3	2	0	0	0	0.037569	1	4072	4072		101.6	57.484	1	266800			35016	4837	24152	24236	35446	35446					-0.01099014668500331
SASKELQQAPA	11	Unmodified	_SASKELQQAPA_					0	0	0		ENST00000538790.1_1_12:122505978-122506339:+|nuORF	ENST00000538790.1_1_12:122505978-122506339:+|nuORF	ENST00000538790.1_1_12:122505978-122506339:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.1993408203125	3	377.199777	1128.5775	-1.0923	-0.000412	0.44229	0.00016683	-0.64998	-0.00024517	377.19990887152693	26.661	0.27029	26.661	26.574	26.844	0					20	10	3	0	0	0	0.64562	1	8403	8403		42.338	9.5875	1	359710			35017	10515	24153	24237	35447	35447					0.018356187754534403
SASKKQSKQ	9	Unmodified	_SASKKQSKQ_					0	0	0			REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF	REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.1905517578125	3	331.189212	990.545808	3.006	0.00099554	0.91682	0.00030364	3.9228	0.0012992	331.18947784216687	14.534	0.87119	14.534	14.375	15.246	0					25	17	3	0	0	0	0.22377	1	3647	3647		65.465	5.3471	1	3048700	+		35018	20099	24154	24238	35448	35448					0.0501567081214489
SASKKQSKQ	9	Unmodified	_SASKKQSKQ_					0	0	0			REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF	REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.281982421875	2	496.28018	990.545808	2.867	0.0014228	0.91155	0.00045238	3.7785	0.0018752	496.2806995873251	15.087	0.11718	15.087	15.029	15.146	0					4	2	2	0	0	0	0.078509	1	3913	3913		85.161	5.4482	1	608220	+		35019	20099	24154	24238	35449	35449					0.0501567081214489
SASLLRER	8	Unmodified	_SASLLRER_					0	0	0			REV__ENSG00000106665|ENST00000223398|CLIP2	REV__ENSG00000106665|ENST00000223398|CLIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2710266113281	2	466.269616	930.524678	2.6327	0.0012276	1.4747	0.00068762	4.1074	0.0019152	466.2703415895318	35.808	1.0615	35.808	35.552	36.613	0					54	21	4	0	0	0	0.6088	1	13825	13825		47.657	0	1	6785200	+		35020	13833	24155	24239	35450	35450					0.056637055032865646
SASPRPRRT	9	Unmodified	_SASPRPRRT_					0	0	0			REV__ENST00000471877.5_1_7:149575832-149576763:+|nuORF	REV__ENST00000471877.5_1_7:149575832-149576763:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.197998046875	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.88	1	49.88	49.38	50.38	0								0	0	0	0.39145	1	19713	19713		13.454	0	1		+		35021	19487	24156	24240	35451	35451					0.0560531500043453
SASPSVPGPT	10	Unmodified	_SASPSVPGPT_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2267761230469	2	450.227082	898.439611	-0.40102	-0.00018055	-0.27771	-0.00012503	-0.67873	-0.00030558	450.2269777692605	20.6	0.16376	20.6	20.494	20.658	0					5	3	2	0	0	0	0.37692	1	6580	6580		58.782	2.3482	1	1010300			35022	3061	24157	24241	35452	35452					-0.01367084753189829
SASQLQIHG	9	Unmodified	_SASQLQIHG_					0	0	0		nc|ENSG00000197647|Q8N7K0-2|ZNF433;ENSG00000197647|ENST00000550507|ZNF433;nc|ENSG00000197647|Q8N7K0|ZNF433	nc|ENSG00000197647|Q8N7K0-2|ZNF433	nc|ENSG00000197647|Q8N7K0-2|ZNF433	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.7454833984375	2	470.745973	939.477394	-1.3203	-0.00062154	0.59098	0.0002782	-0.72935	-0.00034334	470.7462785144927	23.499	0.37066	23.499	23.338	23.709	0					30	13	3	0	0	0	0.51817	1	7032	7032		30.504	1.3541	1	201820			35023	7484	24158	24242	35453	35453					0.005234262322801442
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2618103027344	2	508.261988	1014.50942	-0.097966	-4.9793E-05	-0.062182	-3.1605E-05	-0.16015	-8.1397E-05	508.2619448063437	12.963	0.38517	12.963	12.895	13.28	0					33	19	4	0	0	0	0.00070286	1	2494	2494		177.3	73.291	1	6285700			35024	8869	24159	24243	35454	35454					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.26165771484375	2	508.261988	1014.50942	-0.025549	-1.2986E-05	0.66779	0.00033941	0.64224	0.00032643	508.2624419544061	13.224	1.0669	13.224	12.994	14.061	0					90	28	6	0	0	0	0.0013831	2	2932	2932;3095		182.39	52.97	1	52616000			35025	8869	24159	24243	35455;35456	35455					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.17724609375	3	339.177084	1014.50942	0.51258	0.00017385	-0.28045	-9.5121E-05	0.23213	7.8733E-05	339.1770160892271	13.186	0.59956	13.186	13.105	13.705	0					30	16	4	0	0	0	0.45669	1	2949	2949		50.034	1.432	1	5110300			35026	8869	24159	24243	35457	35457					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.1768798828125	3	339.177084	1014.50942	-0.70115	-0.00023782	0.28923	9.8101E-05	-0.41192	-0.00013971	339.17714124752615	12.965	0.081122	12.965	12.92	13.001	0					7	3	3	0	0	0	0.28855	1	2621	2621		68.626	13.903	1	411810			35027	8869	24159	24243	35458	35458					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2620544433594	2	508.261988	1014.50942	-0.46697	-0.00023734	0.40209	0.00020437	-0.064879	-3.2976E-05	508.2621573157695	12.957	0.21178	12.957	12.915	13.127	0					20	10	4	0	0	0	0.0084686	1	2607	2607		152.06	34.25	1	1018300			35028	8869	24159	24243	35459	35459					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.1772155761719	3	339.177084	1014.50942	1.4809	0.00050228	-1.7516	-0.00059409	-0.2707	-9.1815E-05	339.17671929431265	13.195	0.3317	13.195	13.144	13.476	0					16	7	3	0	0	0	0.16075	1	3163	3163		84.817	28.384	1	27877000			35029	8869	24159	24243	35460	35460					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2619323730469	2	508.261988	1014.50942	-0.39117	-0.00019882	0.19763	0.00010045	-0.19354	-9.837E-05	508.2620937266547	13.207	0.50995	13.207	13.129	13.639	0					36	11	7	0	0	0	0.00017685	1	3156	3156		182.39	75.708	1	5999300			35030	8869	24159	24243	35461	35461					0.002747939154346568
SASSLHLTK	9	Unmodified	_SASSLHLTK_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2635803222656	2	472.263999	942.513445	-0.37156	-0.00017547	-0.37781	-0.00017843	-0.74937	-0.0003539	472.2638796175429	19.732	0.17579	19.732	19.626	19.802	0					9	5	2	0	0	0	0.076532	1	5150	5150		85.862	39.89	1	414620			35031	6851	24160	24244	35462	35462					0.039888834091470926
SASSLHLTK	9	Unmodified	_SASSLHLTK_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2636413574219	2	472.263999	942.513445	-0.58229	-0.00027499	-0.229	-0.00010815	-0.81129	-0.00038314	472.26399003513336	20.104	0.23623	20.104	20.005	20.241	0					12	5	4	0	0	0	0.012936	1	6166	6166		134.77	71.232	1	1704300			35032	6851	24160	24244	35463	35463					0.039888834091470926
SASSLHLTK	9	Unmodified	_SASSLHLTK_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.26373291015625	2	472.263999	942.513445	-0.74336	-0.00035106	0.21932	0.00010357	-0.52404	-0.00024749	472.2641913514066	19.775	0.14487	19.775	19.697	19.842	0					11	5	3	0	0	0	0.054723	1	5408	5408		93.598	44.062	1	421980			35033	6851	24160	24244	35464	35464					0.039888834091470926
SASSLHLTK	9	Unmodified	_SASSLHLTK_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2638244628906	2	472.263999	942.513445	-0.73226	-0.00034582	0.37872	0.00017886	-0.35354	-0.00016696	472.2641339393568	19.953	0.21973	19.953	19.843	20.062	0					11	4	4	0	0	0	0.019258	1	6401	6401		123.21	55.714	1	1883700			35034	6851	24160	24244	35465	35465					0.039888834091470926
SASSSPPPK	9	Unmodified	_SASSSPPPK_					0	0	0			REV__ENSG00000117713|ENST00000324856|ARID1A	REV__ENSG00000117713|ENST00000324856|ARID1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.2216796875	2	429.2218	856.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.098	1	14.098	13.598	14.598	0								0	0	0	0.34845	1	3362	3362		25.574	7.2496	1		+		35035	12219	24161	24245	35466	35466					-0.004910674076086252
SASTHKTI	8	Unmodified	_SASTHKTI_					0	0	0		ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7294616699219	2	422.729792	843.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.425	1	21.425	20.925	21.925	0								0	0	0	1.7419	1	6209	6209		34.173	0	1				35036	154	24162	24246	35467	35467					0.017046388292897063
SASVVFTTY	9	Unmodified	_SASVVFTTY_					0	0	0		nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7447814941406	2	487.745108	973.475663	0.8045	0.00039239	-0.99364	-0.00048464	-0.18914	-9.2254E-05	487.7445787102393	44.587	0.13804	44.587	44.506	44.644	0					8	5	2	0	0	0	0.2873	1	17860	17860		51.335	10.763	1	111260			35037	7925	24163	24247	35468	35468					-0.012136275763282356
SATESLPTLEL	11	Unmodified	_SATESLPTLEL_					0	0	0		nc|ENSG00000132026|Q9BSG5-2|RTBDN	nc|ENSG00000132026|Q9BSG5-2|RTBDN	nc|ENSG00000132026|Q9BSG5-2|RTBDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.5228576660156	3	387.539688	1159.59723	0.53388	0.0002069	1.3344	0.00051715	1.8683	0.00072405	387.5404700912662	19.484	0.71839	19.484	19.276	19.995	0					21	14	4	0	0	0	0.65907	1	6021	6021		21.78	0	1	1032400			35038	11525	24164	24248	35469	35469					0.023819499955379797
SATETCYTY	9	Carbamidomethyl (C)	_SATETC(Carbamidomethyl (C))YTY_	SATETC(1)YTY		SATETC(61)YTY		0	1	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2180786132812	2	548.218597	1094.42264	1.6394	0.00089875	-1.0679	-0.00058542	0.57153	0.00031333	548.2179627116174	31.678	0.18394	31.678	31.616	31.8	0					13	9	2	0	0	0	0.20551	1	10189	10189		60.972	20.399	1	47660			35039	3789	24165	24249	35470	35470	164				-0.1207937342128389
SATETCYTY	9	Carbamidomethyl (C)	_SATETC(Carbamidomethyl (C))YTY_	SATETC(1)YTY		SATETC(120)YTY		0	1	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.218994140625	2	548.218597	1094.42264	0.40249	0.00022065	0.32582	0.00017862	0.7283	0.00039927	548.2189010831796	31.743	0.26032	31.743	31.628	31.889	0					25	10	3	0	0	0	0.018419	1	10535	10535		124.59	58.791	1	254300			35040	3789	24165	24249	35471	35471	164				-0.1207937342128389
SATETCYTY	9	Carbamidomethyl (C)	_SATETC(Carbamidomethyl (C))YTY_	SATETC(1)YTY		SATETC(120)YTY		0	1	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2191772460938	2	548.218597	1094.42264	1.1558	0.00063365	-0.52887	-0.00028994	0.62697	0.00034371	548.2184161195619	31.711	0.23744	31.711	31.632	31.869	0					15	7	3	0	0	0	0.020824	1	10960	10960		120.62	52.136	1	308090			35041	3789	24165	24249	35472	35472	164				-0.1207937342128389
SATETCYTY	9	Carbamidomethyl (C)	_SATETC(Carbamidomethyl (C))YTY_	SATETC(1)YTY		SATETC(69)YTY		0	1	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2196044921875	2	548.218597	1094.42264	-1.5073	-0.00082635	2.722	0.0014923	1.2147	0.00066591	548.2203329832636	31.743	0.26666	31.743	31.619	31.886	0					16	8	3	0	0	0	0.14603	1	10973	10973		68.787	22.835	1	184750			35042	3789	24165	24249	35473	35473	164				-0.1207937342128389
SATETCYTY	9	Carbamidomethyl (C)	_SATETC(Carbamidomethyl (C))YTY_	SATETC(1)YTY		SATETC(140)YTY		0	1	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2189331054688	2	548.218597	1094.42264	1.8654	0.0010226	-1.5028	-0.00082389	0.36256	0.00019876	548.2178843128695	31.91	0.41759	31.91	31.802	32.219	0					21	8	4	0	0	0	0.011031	1	11989	11989		138.83	61.979	1	1790000			35043	3789	24165	24249	35474	35474	164				-0.1207937342128389
SATETCYTY	9	Unmodified	_SATETCYTY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7080688476562	2	519.707865	1037.40118	1.444	0.00075046	-0.80573	-0.00041874	0.63827	0.00033171	519.7074428454048	33.741	0.26371	33.741	33.658	33.922	0					22	10	3	0	0	0	0.20551	1	11028	11028		60.972	29.017	1	212260			35044	3789	24165	24250	35475	35475					-0.11602758449998873
SATETCYTY	9	Unmodified	_SATETCYTY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.708740234375	2	519.707865	1037.40118	1.4062	0.00073084	-1.076	-0.00055919	0.33029	0.00017165	519.7075174877999	34.001	0.50603	34.001	33.92	34.426	0					30	13	3	0	0	0	0.22377	1	12723	12723		58.782	19.976	1	694830			35045	3789	24165	24250	35476	35476					-0.11602758449998873
SATETCYTY	9	Unmodified	_SATETCYTY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7078857421875	2	519.707865	1037.40118	1.1178	0.00058091	-0.85362	-0.00044363	0.26415	0.00013728	519.7074949598361	34.02	0.43781	34.02	33.92	34.358	0					21	10	4	0	0	0	0.027316	1	13084	13084		111.65	59.349	1	594030			35046	3789	24165	24250	35477	35477					-0.11602758449998873
SATETCYTY	9	Unmodified	_SATETCYTY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7086181640625	2	519.707865	1037.40118	1.3515	0.0007024	-0.11906	-6.1878E-05	1.2325	0.00064052	519.7077446228242	33.826	0.26015	33.826	33.722	33.982	0					13	7	3	0	0	0	0.05357	1	11922	11922		94.006	22.629	1	125920			35047	3789	24165	24250	35478	35478					-0.11602758449998873
SATETCYTY	9	Unmodified	_SATETCYTY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.708740234375	2	519.707865	1037.40118	0.99294	0.00051604	-0.39946	-0.0002076	0.59348	0.00030844	519.7077114816732	33.853	0.32726	33.853	33.712	34.039	0					19	9	3	0	0	0	0.16002	1	11936	11936		66.429	11.665	1	194550			35048	3789	24165	24250	35479	35479					-0.11602758449998873
SATETCYTY	9	Unmodified	_SATETCYTY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7081298828125	2	519.707865	1037.40118	0.31147	0.00016187	0.24745	0.0001286	0.55891	0.00029047	519.708167043252	34.01	0.60092	34.01	33.859	34.46	0					32	12	4	0	0	0	0.023074	1	13000	13000		116.9	64.604	1	896090			35049	3789	24165	24250	35480	35480					-0.11602758449998873
SATFLARRH	9	Unmodified	_SATFLARRH_					0	0	0		ENST00000434077.1_1_6:41885648-41888790:-|nuORF;ENST00000482361.1_1_6:41877245-41888790:-|nuORF	ENST00000434077.1_1_6:41885648-41888790:-|nuORF	ENST00000434077.1_1_6:41885648-41888790:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7968139648438	2	529.796332	1057.57811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.525	1	33.525	33.025	34.025	0								0	0	0	0.23459	1	10912	10912		45.952	9.5052	1				35050	9515	24166	24251	35481	35481					0.05162503005817598
SATGHPPPRI	10	Unmodified	_SATGHPPPRI_					0	0	0		PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant;nc|ENSG00000130508|Q92626-2|PXDN;PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant;PXDN|p.N865Mfs*25|3|0.42|ENSG00000130508|chr2:1649188-1649188|G/-|frameshift_variant;PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant;PXDN|p.N1190Mfs*12|1|0.22|ENSG00000130508|chr2:1648211-1648211|T/-|frameshift_variant;PXDN|p.R1242Pfs*22|1|0.07|ENSG00000130508|chr2:1644636-1644637|-/AG|frameshift_variant;PXDN|p.E1339Lfs*66|1|0.26|ENSG00000130508|chr2:1639361-1639362|-/AG|frameshift_variant;ENSG00000130508|ENST00000252804|PXDN;ENST00000478155.5_1_2:1668625-1670220:-|nuORF	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.8565673828125	3	344.857686	1031.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.924	1	32.924	32.424	33.424	0								0	0	0	0.40862	1	11021	11021		26.063	0.48933	1				35051	11991	24167	24252	35482	35482					0.03671394394609706
SATGKHPILT	10	Unmodified	_SATGKHPILT_					0	0	0		ENST00000551834.5_3_12:56547288-56547546:+|nuORF	ENST00000551834.5_3_12:56547288-56547546:+|nuORF	ENST00000551834.5_3_12:56547288-56547546:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.1991882324219	3	342.197708	1023.57129	3.0241	0.0010348	1.0372	0.00035494	4.0613	0.0013898	342.1980966801003	25.315	0.47136	25.315	25.179	25.65	0					19	9	3	0	0	0	0.67098	1	8873	8873		24.232	0	1	464560			35052	10629	24168	24253	35483	35483					0.0604514533456495
SATGRELWS	9	Unmodified	_SATGRELWS_					0	0	0		IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant;ENSG00000081148|ENST00000193391|IMPG2	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7529296875	2	503.751256	1005.48796	1.1897	0.0005993	1.5958	0.00080386	2.7854	0.0014032	503.75229443104877	23.226	0.4153	23.226	23.069	23.484	0					23	8	4	0	0	0	0.22377	1	7831	7831		58.782	2.3482	1	1396000			35053	1655	24169	24254	35484	35484					-0.01456591113299055
SATGVLFLL	9	Unmodified	_SATGVLFLL_					0	0	0			REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.77642822265625	2	460.776211	919.537869	-0.45727	-0.0002107	0.17432	8.032E-05	-0.28295	-0.00013038	460.7762350800498	37.016	0.89574	37.016	36.778	37.674	0					49	18	3	0	0	0	0.32741	1	14712	14712		47.916	5.4411	1	410930	+		35054	12269	24170	24255	35485	35485					0.07488143562670757
SATIRKAPN	9	Unmodified	_SATIRKAPN_					0	0	0			REV__nc|ENSG00000145349|Q13557-4|CAMK2D	REV__nc|ENSG00000145349|Q13557-4|CAMK2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2782897949219	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.354	1	48.354	47.854	48.854	0								0	0	0	0.3428	1	19223	19223		26.693	3.1702	1		+		35055	15267	24171	24256	35486	35486					0.06031992020314192
SATLKPWQN	9	Unmodified	_SATLKPWQN_					0	0	0			REV__ENST00000604273.1_2_1:145515521-145515950:-|nuORF	REV__ENST00000604273.1_2_1:145515521-145515950:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.8537902832031	3	348.853941	1043.53999	0.33455	0.00011671	-0.74873	-0.0002612	-0.41418	-0.00014449	348.8537010396831	18.782	0.13947	18.782	18.711	18.85	0					7	3	3	0	0	0	0.37197	1	5833	5833		35.152	0	1	190490	+		35056	18279	24172	24257	35487	35487					0.019965723004588654
SATLLCWK	8	Unmodified	_SATLLCWK_					0	0	0		ENST00000457861.1_1_7:935511-935808:+|nuORF	ENST00000457861.1_1_7:935511-935808:+|nuORF	ENST00000457861.1_1_7:935511-935808:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2467041015625	2	461.246763	920.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.781	1	33.781	33.281	34.281	0								0	0	0	1.7419	1	12525	12525		31.955	0	1				35057	9703	24173	24258	35488	35488					0.015553439966765836
SATLLTHPLA	10	Unmodified	_SATLLTHPLA_					0	0	0			REV__OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant	REV__OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.8659973144531	3	341.865958	1022.57605	0.50873	0.00017392	-0.34045	-0.00011639	0.16827	5.7527E-05	341.8658271123242	16.446	0.27051	16.446	16.35	16.62	0					13	6	3	0	0	0	0.58189	1	4468	4468		36.447	6.129	1	659240	+		35058	16451	24174	24259	35489	35489					0.06566029477323809
SATLRHPAI	9	Unmodified	_SATLRHPAI_					0	0	0			REV__ENST00000303531.11_2_16:24229660-24229813:+|nuORF	REV__ENST00000303531.11_2_16:24229660-24229813:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2801208496094	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.846	1	22.846	22.346	23.346	0								0	0	0	0.25587	1	6524	6524		27.882	0	1		+		35059	18222	24175	24260	35490	35490					0.06172295882936396
SATLSFRLL	9	Unmodified	_SATLSFRLL_					0	0	0			REV__ENST00000342295.5_2_4:26434435-26434762:+|nuORF	REV__ENST00000342295.5_2_4:26434435-26434762:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5342712402344	3	336.53432	1006.58113	-1.9131	-0.00064381	1.4318	0.00048184	-0.48129	-0.00016197	336.53487916533544	18.641	1.5857	18.641	18.501	20.087	0					104	38	5	0	0	0	0.57706	1	5533	5533		24.519	0.99649	1	134120000	+		35060	18458	24176	24261	35491	35491					0.07810333339955378
SATQAVFQK	9	Unmodified	_SATQAVFQK_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2637023925781	2	490.263999	978.513445	-1.256	-0.00061579	0.8591	0.00042118	-0.39694	-0.0001946	490.26430410893266	23.457	0.15381	23.457	23.395	23.549	0					11	5	3	0	0	0	0.093587	1	7056	7056		83.647	34.205	1	139860			35061	2076	24177	24262	35492	35492					0.02332883409144415
SATQAVFQK	9	Unmodified	_SATQAVFQK_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2637023925781	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.685	1	23.685	23.185	24.185	0								0	0	0	0.00041563	1	8194	8194		138.06	44.867	1				35062	2076	24177	24262	35493	35493					0.02332883409144415
SATQAVFQK	9	Unmodified	_SATQAVFQK_					0	0	0		ENST00000558534.5_1_14:24738716-24740321:-|nuORF;RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant;RABGGTA|p.Q194Sfs*43|1|0.31|ENSG00000100949|chr14:24269542-24269542|G/-|frameshift_variant;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	ENST00000558534.5_1_14:24738716-24740321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2635498046875	2	490.263999	978.513445	-2.7951	-0.0013703	2.2963	0.0011258	-0.49878	-0.00024453	490.2652837917478	23.511	0.14021	23.511	23.418	23.558	0					6	3	2	0	0	0	0.073657	1	7196	7196		90.601	18.723	1	136870			35063	2076	24177	24262	35494	35494					0.02332883409144415
SATQDLPPVLA	11	Unmodified	_SATQDLPPVLA_					0	0	0			REV__ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant	REV__ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.3045043945312	2	556.303321	1110.59209	-0.9936	-0.00055274	1.815	0.0010097	0.82138	0.00045693	556.3046727010985	31.162	0.10331	31.162	31.128	31.232	0					5	3	2	0	0	0	0.7098	1	10720	10720		26.693	3.6504	1	82660	+		35064	12089	24178	24263	35495	35495					0.04121690923557253
SATRLLSFL	9	Unmodified	_SATRLLSFL_					0	0	0		ENST00000484939.1_1_1:84971984-84972092:+|nuORF	ENST00000484939.1_1_1:84971984-84972092:+|nuORF	ENST00000484939.1_1_1:84971984-84972092:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53424072265625	3	336.53432	1006.58113	0.24123	8.1182E-05	-0.68454	-0.00023037	-0.44331	-0.00014919	336.53405570167246	20.948	0.67564	20.948	20.808	21.484	0					42	21	3	0	0	0	0.57706	1	5889	5889		24.519	2.8334	1	257940			35065	10002	24179	24264	35496	35496					0.07810333339955378
SATSKTFEK	9	Unmodified	_SATSKTFEK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7618103027344	2	499.761289	997.508025	0.16213	8.1026E-05	0.84687	0.00042323	1.009	0.00050426	499.76151594129294	15.698	0.11029	15.698	15.648	15.758	0					7	4	2	0	0	0	0.11411	1	3578	3578		76.17	22.818	1	158090			35066	241	24180	24265	35497	35497					0.009171598266675574
SATSKTFEK	9	Unmodified	_SATSKTFEK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7615661621094	2	499.761289	997.508025	-2.1513	-0.0010752	3	0.0014993	0.84861	0.0004241	499.76275417771257	15.689	0.10863	15.689	15.639	15.748	0					8	4	3	0	0	0	0.14578	1	3575	3575		68.846	17.511	1	99618			35067	241	24180	24265	35498	35498					0.009171598266675574
SATSSRGKQK	10	Unmodified	_SATSSRGKQK_					0	0	0			REV__ENSG00000227057|ENST00000374617|WDR46	REV__ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2903442382812	2	525.288537	1048.56252	3.4427	0.0018084	0.40531	0.00021291	3.848	0.0020213	525.288640839619	15.038	0.60123	15.038	14.928	15.529	0					22	12	2	0	0	0	0.080628	1	3886	3886		110.12	110.12	1	9736500	+		35068	17635	24181	24266	35499	35499					0.040181716980896454
SATSTAPRP	9	Unmodified	_SATSTAPRP_					0	0	0			REV__ENST00000448973.6_1_16:685083-685236:-|nuORF	REV__ENST00000448973.6_1_16:685083-685236:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2236633300781	2	444.232699	886.450845	0.58702	0.00026078	-3.3327	-0.0014805	-2.7457	-0.0012197	444.2310845758202	19.841	1.4523	19.841	19.083	20.535	0					39	32	2	0	0	0	0.26904	1	6114	6114		53.351	3.9099	1	290310	+		35069	19300	24182	24267	35500	35500					0.003077373409610118
SATSTDVV	8	Unmodified	_SATSTDVV_					0	0	0		tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.1911926269531	2	390.192708	778.370863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.303	1	16.303	15.803	16.803	0								0	0	0	1.7419	1	4632	4632		44.531	9.3304	1				35070	22809	24183	24268	35501	35501					-0.027187490528831404
SATTSPFFK	9	Unmodified	_SATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2528076171875	2	493.2531	984.491647	-0.12274	-6.0543E-05	0.76335	0.00037652	0.64061	0.00031598	493.25350506901657	33.041	0.31544	33.041	32.965	33.281	0					29	14	3	0	0	0	0.42902	1	10714	10714		39.253	11.371	1	255000			35071	3882	24184	24269	35502	35502					-0.0012192133942789951
SATTSPFFK	9	Unmodified	_SATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.25323486328125	2	493.2531	984.491647	0.77389	0.00038172	-0.15135	-7.4652E-05	0.62254	0.00030707	493.25283115608624	33.355	0.62419	33.355	33.084	33.708	0					53	16	5	0	0	0	0.11898	1	12311	12311		75.043	6.2565	1	1640100			35072	3882	24184	24269	35503	35503					-0.0012192133942789951
SATTSPFFK	9	Unmodified	_SATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2536926269531	2	493.2531	984.491647	-0.051368	-2.5337E-05	0.28264	0.00013941	0.23127	0.00011408	493.2532951948145	33.351	0.32121	33.351	33.187	33.508	0					18	7	4	0	0	0	0.35021	1	12734	12734		45.972	3.5761	1	325920			35073	3882	24184	24269	35504	35504					-0.0012192133942789951
SATTSPFFK	9	Unmodified	_SATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2535705566406	2	493.2531	984.491647	0.31183	0.00015381	0.22631	0.00011163	0.53814	0.00026544	493.2532036812097	33.093	0.23043	33.093	33.012	33.242	0					15	7	3	0	0	0	0.36892	1	11577	11577		44.377	7.2181	1	152230			35074	3882	24184	24269	35505	35505					-0.0012192133942789951
SATTSPFFK	9	Unmodified	_SATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2528381347656	2	493.2531	984.491647	-0.61283	-0.00030228	1.891	0.00093274	1.2782	0.00063046	493.25387368172596	33.258	0.50657	33.258	33.059	33.566	0					32	10	5	0	0	0	0.28897	1	12611	12611		51.193	11.94	1	1759800			35075	3882	24184	24269	35506	35506					-0.0012192133942789951
SATVLTFLR	9	Unmodified	_SATVLTFLR_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.53432	1006.58113	0.24144	8.1252E-05	-0.51666	-0.00017387	-0.27522	-9.262E-05	336.5341527869446	34.184	0.47678	34.184	34.067	34.544	0					30	21	2	0	0	0	0.57706	1	11190	11190		47.657	8.4045	1	95058			35076	4982	24185	24270	35507	35507					0.07810333339944009
SATVVSAVQ	9	Unmodified	_SATVVSAVQ_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.237060546875	2	431.23745	860.460347	-0.46587	-0.0002009	-0.20542	-8.8586E-05	-0.67129	-0.00028948	431.23723327680773	20.302	0.41656	20.302	20.044	20.46	0					22	8	4	0	0	0	0.24095	1	6390	6390		56.721	5.3856	1	696220		+	35077	665	24186	24271	35508	35508					0.02453505626488095
SAVAGKVVK	9	Unmodified	_SAVAGKVVK_					0	0	0		nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.7740783691406	2	429.774003	857.533452	0.19593	8.4207E-05	-0.15975	-6.8656E-05	0.036184	1.5551E-05	429.7740728634419	18.331	0.097582	18.331	18.286	18.383	0					7	4	2	0	0	0	0.39215	1	4541	4541		42.396	1.8235	1	111870			35078	11592	24187	24272	35509	35509					0.09898679139746491
SAVAGKVVK	9	Unmodified	_SAVAGKVVK_					0	0	0		nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7742004394531	2	429.774003	857.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.44	1	18.44	17.94	18.94	0								0	0	0	0.27939	1	4812	4812		39.253	2.0937	1				35079	11592	24187	24272	35510	35510					0.09898679139746491
SAVAPRKPP	9	Unmodified	_SAVAPRKPP_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7767333984375	2	461.777077	921.5396	-0.81731	-0.00037742	0.27995	0.00012928	-0.53736	-0.00024814	461.7772666185068	18.274	0.05863	18.274	18.232	18.29	0					6	2	3	0	0	0	0.54267	1	4745	4745		27.882	0	1	82513	+		35080	13016	24188	24273	35511	35511					0.0756919737127646
SAVDPVQMK	9	Unmodified	_SAVDPVQMK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7524108886719	2	487.75241	973.490267	-0.065662	-3.2027E-05	-0.37572	-0.00018326	-0.44138	-0.00021528	487.7521540942077	26.708	0.13503	26.708	26.623	26.758	0					7	4	2	0	0	0	0.28897	1	8154	8154		51.193	19.238	1	38556			35081	4106	24189	24274	35512	35512					0.0024612130016521405
SAVDPVQMK	9	Unmodified	_SAVDPVQMK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7519836425781	2	487.75241	973.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.824	1	26.824	26.324	27.324	0								0	0	0	0.30504	1	8693	8693		34.173	3.6689	1				35082	4106	24189	24274	35513	35513					0.0024612130016521405
SAVDVHINM	9	Unmodified	_SAVDVHINM_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2420654296875	2	493.242209	984.469866	0.77599	0.00038275	-1.549	-0.00076402	-0.77299	-0.00038127	493.2416129756702	36.639	0.16127	36.639	36.563	36.724	0					12	4	3	0	0	0	0.11898	1	13827	13827		75.043	27.386	1	458880			35083	7703;11722	24190	24275	35514	35514					-0.022990493596466877
SAVDVHINM	9	Unmodified	_SAVDVHINM_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2421569824219	2	493.242209	984.469866	-1.2685	-0.00062568	0.89054	0.00043925	-0.37795	-0.00018642	493.2429510472058	36.415	0.241	36.415	36.318	36.559	0					31	13	4	0	0	0	0.16806	1	12326	12326		65.465	20.934	1	354670			35084	7703;11722	24190	24275	35515	35515					-0.022990493596466877
SAVDVHINM	9	Unmodified	_SAVDVHINM_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2420654296875	2	493.242209	984.469866	0.62549	0.00030852	-0.98167	-0.0004842	-0.35618	-0.00017568	493.24196639376567	36.603	0.40052	36.603	36.502	36.902	0					39	12	5	0	0	0	0.035062	1	14255	14255		104.06	54.615	1	3751700			35085	7703;11722	24190	24275	35516	35516					-0.022990493596466877
SAVDVHINM	9	Unmodified	_SAVDVHINM_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2418212890625	2	493.242209	984.469866	0.0058657	2.8932E-06	0.062714	3.0933E-05	0.068579	3.3826E-05	493.2423368032328	36.39	0.22821	36.39	36.315	36.543	0					21	10	3	0	0	0	0.11898	1	13024	13024		75.043	19.539	1	319590			35086	7703;11722	24190	24275	35517	35517					-0.022990493596466877
SAVDVHINM	9	Unmodified	_SAVDVHINM_					0	0	0		ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6	ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2420654296875	2	493.242209	984.469866	0.86932	0.00042878	-1.3523	-0.00066701	-0.48298	-0.00023823	493.2416730086144	36.566	0.66332	36.566	36.217	36.88	0					38	13	5	0	0	0	0.056004	1	14211	14211		93.143	34.913	1	2266200			35087	7703;11722	24190	24275	35518	35518					-0.022990493596466877
SAVEAQLFTYC	11	Unmodified	_SAVEAQLFTYC_					0	0	0			REV__nc|ENSG814|P63133|ERVK-8_pol	REV__nc|ENSG814|P63133|ERVK-8_pol	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	616.2843627929688	2	616.286814	1230.55907	-2.0314	-0.0012519	-2.1153	-0.0013036	-4.1467	-0.0025555	616.2855511832938	30.244	0.20216	30.244	30.133	30.335	0					11	5	3	0	0	0	0.68382	1	10267	10267		29.17	1.2878	1	157680	+		35088	21268	24191	24276	35519	35519					-0.04698259190763565
SAVEPKTAL	9	Unmodified	_SAVEPKTAL_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;ENST00000563635.5_1_13:76195947-76378681:+|nuORF;LMO7|p.D282Mfs*3|1|0.16|ENSG00000136153|chr13:75807821-75807821|A/-|frameshift_variant	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2607421875	2	458.260925	914.507297	-0.97997	-0.00044908	0.93884	0.00043023	-0.041134	-1.885E-05	458.26121624127484	25.377	0.28511	25.377	25.253	25.538	0					27	10	4	0	0	0	0.023928	1	7892	7892		115.49	33.189	1	751510			35089	4057	24192	24277	35520	35520					0.04662365177614447
SAVEPKTAL	9	Unmodified	_SAVEPKTAL_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;ENST00000563635.5_1_13:76195947-76378681:+|nuORF;LMO7|p.D282Mfs*3|1|0.16|ENSG00000136153|chr13:75807821-75807821|A/-|frameshift_variant	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2606506347656	2	458.260925	914.507297	0.72189	0.00033081	-1.4925	-0.00068398	-0.77066	-0.00035316	458.26035195537645	25.594	0.78979	25.594	25.442	26.232	0					25	14	2	0	0	0	0.035062	1	9137	9137		104.06	21.816	1	3927100			35090	4057	24192	24277	35521	35521					0.04662365177614447
SAVFLSFKSPI	11	Unmodified	_SAVFLSFKSPI_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.2274475097656	3	399.228897	1194.66486	0.41386	0.00016522	-4.4	-0.0017566	-3.9862	-0.0015914	399.2272843752473	20.583	0.26558	20.583	20.477	20.743	0					15	5	4	0	0	0	0.52595	1	6571	6571		42.338	7.1599	1	2398700			35091	7644	24193	24278	35522	35522					0.07531444717005797
SAVGHVFSL	9	Unmodified	_SAVGHVFSL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7476806640625	2	458.747985	915.481417	0.72213	0.00033127	-1.2485	-0.00057277	-0.52642	-0.00024149	458.74743098619865	40.753	0.41735	40.753	40.645	41.063	0					26	13	3	0	0	0	0.1115	1	16047	16047		76.774	12.567	1	447500			35092	5746	24194	24279	35523	35523					0.020295157259852203
SAVGHVFSL	9	Unmodified	_SAVGHVFSL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.74713134765625	2	458.747985	915.481417	-2.6403	-0.0012113	1.8493	0.00084836	-0.79104	-0.00036289	458.74890176911146	40.518	0.21109	40.518	40.433	40.644	0					19	12	2	0	0	0	0.35045	1	14384	14384		45.952	8.7928	1	61395			35093	5746	24194	24279	35524	35524					0.020295157259852203
SAVGHVLGRL	10	Unmodified	_SAVGHVLGRL_					0	0	0		sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.8691101074219	3	336.869814	1007.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.349	1	50.349	49.849	50.849	0								0	0	0	0.40797	1	18889	18889		28.081	1.3886	1				35094	22459	24195	24280	35525	35525					0.08412271291331308
SAVGTIVKK	9	Unmodified	_SAVGTIVKK_					0	0	0		ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF;ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7864685058594	2	451.78711	901.559667	-0.32286	-0.00014587	-0.4454	-0.00020123	-0.76827	-0.00034709	451.7870271259869	19.254	0.11162	19.254	19.186	19.297	0					8	3	3	0	0	0	0.048471	1	4934	4934		95.815	16.364	1	387940			35095	5410	24196	24281	35526	35526					0.10494948311236385
SAVGTIVKK	9	Unmodified	_SAVGTIVKK_					0	0	0		ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF;ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7869567871094	2	451.78711	901.559667	-0.51031	-0.00023055	0.18437	8.3297E-05	-0.32594	-0.00014726	451.7871205885151	19.608	0.1536	19.608	19.508	19.661	0					10	3	4	0	0	0	0.015496	1	5932	5932		129.42	33.231	1	1344800			35096	5410	24196	24281	35527	35527					0.10494948311236385
SAVGTIVKK	9	Unmodified	_SAVGTIVKK_					0	0	0		ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF;ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7869567871094	2	451.78711	901.559667	-1.0965	-0.00049539	0.588	0.00026565	-0.5085	-0.00022974	451.7874194774956	19.273	0.13623	19.273	19.176	19.312	0					9	4	3	0	0	0	0.023928	1	5177	5177		115.49	16.119	1	390920			35097	5410	24196	24281	35528	35528					0.10494948311236385
SAVGTIVKK	9	Unmodified	_SAVGTIVKK_					0	0	0		ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF;ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	ENST00000580322.5_1_17:73702024-73702598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7869567871094	2	451.78711	901.559667	-0.36374	-0.00016433	0.031194	1.4093E-05	-0.33255	-0.00015024	451.78708732025694	19.455	0.16293	19.455	19.396	19.559	0					10	3	4	0	0	0	0.015496	1	6163	6163		129.42	33.231	1	1399300			35098	5410	24196	24281	35529	35529					0.10494948311236385
SAVKAGRY	8	Unmodified	_SAVKAGRY_					0	0	0			REV__ENSG00000125522|ENST00000684052|NPBWR2	REV__ENSG00000125522|ENST00000684052|NPBWR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.2402038574219	2	426.240327	850.466101	0.89952	0.00038341	-1.7657	-0.00075263	-0.86622	-0.00036922	426.2398656141946	18.212	0.44826	18.212	18.082	18.53	0					16	10	2	0	0	0	0.65276	1	5278	5278		40.573	0	1	853520	+		35099	14434	24197	24282	35530	35530					0.0348864892880556
SAVKEGTAM	9	Unmodified	_SAVKEGTAM_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1;BICC1|p.I566Sfs*5|1|0.57|ENSG00000122870|chr10:58799217-58799217|A/-|frameshift_variant;BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant;BICC1|p.P501Hfs*18|1|0.03|ENSG00000122870|chr10:58798530-58798530|C/-|frameshift_variant	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.22332763671875	2	447.223485	892.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.245	1	19.245	18.745	19.745	0								0	0	0	0.18645	1	4941	4941		52.937	5.2794	1				35100	3290	24198	24283	35531	35531					-0.018101406252640118
SAVKEGTAM	9	Unmodified	_SAVKEGTAM_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1;BICC1|p.I566Sfs*5|1|0.57|ENSG00000122870|chr10:58799217-58799217|A/-|frameshift_variant;BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant;BICC1|p.P501Hfs*18|1|0.03|ENSG00000122870|chr10:58798530-58798530|C/-|frameshift_variant	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.22308349609375	2	447.223485	892.432418	0.60914	0.00027242	-1.3295	-0.00059456	-0.72031	-0.00032214	447.2228219163581	19.575	0.15122	19.575	19.481	19.632	0					6	3	2	0	0	0	0.16806	1	5942	5942		65.465	21.349	1	617640			35101	3290	24198	24283	35532	35532					-0.018101406252640118
SAVKEGTAM	9	Unmodified	_SAVKEGTAM_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1;BICC1|p.I566Sfs*5|1|0.57|ENSG00000122870|chr10:58799217-58799217|A/-|frameshift_variant;BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant;BICC1|p.P501Hfs*18|1|0.03|ENSG00000122870|chr10:58798530-58798530|C/-|frameshift_variant	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.2230529785156	2	447.223485	892.432418	-1.172	-0.00052416	0.1912	8.5509E-05	-0.98083	-0.00043865	447.2236818523229	19.245	0.09833	19.245	19.187	19.285	0					7	3	3	0	0	0	0.3269	1	5184	5184		47.96	5.5634	1	116180			35102	3290	24198	24283	35533	35533					-0.018101406252640118
SAVKEGTAM	9	Unmodified	_SAVKEGTAM_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1;BICC1|p.I566Sfs*5|1|0.57|ENSG00000122870|chr10:58799217-58799217|A/-|frameshift_variant;BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant;BICC1|p.P501Hfs*18|1|0.03|ENSG00000122870|chr10:58798530-58798530|C/-|frameshift_variant	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.22308349609375	2	447.223485	892.432418	-2.6651	-0.0011919	1.906	0.00085241	-0.75908	-0.00033948	447.2243420684489	19.315	0.13443	19.315	19.221	19.356	0					5	3	2	0	0	0	0.33044	1	5230	5230		47.657	1.6851	1	103530			35103	3290	24198	24283	35534	35534					-0.018101406252640118
SAVLERPK	8	Unmodified	_SAVLERPK_					0	0	0		ENST00000559824.5_1_15:60771531-60771588:+|nuORF	ENST00000559824.5_1_15:60771531-60771588:+|nuORF	ENST00000559824.5_1_15:60771531-60771588:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2685546875	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.473	1	12.473	11.973	12.973	0								0	0	0	1.7419	1	2660	2660		18.324	1.8513	1				35104	10681	24199	24284	35535	35535					0.07029491134380805
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant;ENSG00000177189|ENST00000379565|RPS6KA3	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2948303222656	2	490.294768	978.574983	-1.2565	-0.00061603	1.3686	0.00067102	0.11215	5.4985E-05	490.2953567376405	39.868	0.24994	39.868	39.78	40.029	0					32	14	3	0	0	0	0.3269	1	13366	13366		47.96	14.444	1	262880			35105	6652	24200	24285	35536	35536					0.08483815108422732
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant;ENSG00000177189|ENST00000379565|RPS6KA3	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2942199707031	2	490.294768	978.574983	-0.068808	-3.3736E-05	0.29544	0.00014485	0.22663	0.00011112	490.2948627560055	40.09	0.36555	40.09	39.966	40.331	0					33	13	4	0	0	0	0.015496	1	15772	15772		129.42	47.181	1	904620			35106	6652	24200	24285	35537	35537					0.08483815108422732
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant;ENSG00000177189|ENST00000379565|RPS6KA3	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.29571533203125	2	490.294768	978.574983	0.60155	0.00029494	-0.026093	-1.2793E-05	0.57545	0.00028214	490.294760209792	39.839	0.26538	39.839	39.769	40.035	0					28	14	3	0	0	0	0.14578	1	14175	14175		68.846	32.399	1	164460			35107	6652	24200	24285	35538	35538					0.08483815108422732
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant;ENSG00000177189|ENST00000379565|RPS6KA3	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2961730957031	2	490.294768	978.574983	-0.11429	-5.6036E-05	0.27367	0.00013418	0.15938	7.8142E-05	490.2948306135958	39.845	0.29968	39.845	39.763	40.062	0					33	16	3	0	0	0	0.28897	1	14173	14173		51.193	11.94	1	357470			35108	6652	24200	24285	35539	35539					0.08483815108422732
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant;ENSG00000177189|ENST00000379565|RPS6KA3	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.29443359375	2	490.294768	978.574983	-0.54174	-0.00026561	0.20902	0.00010248	-0.33272	-0.00016313	490.2948317640165	40.025	0.49281	40.025	39.883	40.376	0					27	11	4	0	0	0	0.035106	1	15828	15828		104.01	21.263	1	2819500			35109	6652	24200	24285	35540	35540					0.08483815108422732
SAVLNWAI	8	Unmodified	_SAVLNWAI_					0	0	0			REV__GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant	REV__GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2427673339844	2	437.245078	872.475603	-3.0739	-0.001344	-1.9527	-0.00085379	-5.0266	-0.0021978	437.24408997720377	21.226	0.52688	21.226	20.908	21.435	0					16	12	3	0	0	0	0.52345	1	6089	6089		57.811	0.35863	1	206320	+		35110	13051	24201	24286	35541	35541					0.034264172143252836
SAVPPTKEK	9	Unmodified	_SAVPPTKEK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7735595703125	2	478.7742	955.533846	-0.032663	-1.5638E-05	-1.9383	-0.000928	-1.9709	-0.00094364	478.77307978824297	13.918	0.28876	13.918	13.766	14.055	0					19	13	2	0	0	0	0.40353	1	2788	2788		41.427	0.64845	1	193200			35111	3724	24202	24287	35542	35542					0.0543005406894963
SAVPPTKEK	9	Unmodified	_SAVPPTKEK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7739562988281	2	478.7742	955.533846	-0.45166	-0.00021624	-0.44749	-0.00021425	-0.89915	-0.00043049	478.7739240637152	14.158	2.2056	14.158	14.007	16.213	0					73	45	2	0	0	0	0.063171	1	3620	3620		90.601	2.8466	1	1344400			35112	3724	24202	24287	35543	35543					0.0543005406894963
SAVPTQQQVV	10	Unmodified	_SAVPTQQQVV_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.78759765625	2	528.787838	1055.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.415	1	34.415	33.915	34.915	0								0	0	0	0.39244	1	13263	13263		32.812	0	1		+		35113	16937	24203	24288	35544	35544					0.035565376093245504
SAVQYCHQK	9	Unmodified	_SAVQYCHQK_					0	0	0		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;MARK2|p.T549Rfs*67|2|0.4|ENSG00000072518|chr11:63904110-63904110|C/-|frameshift_variant;MARK2|p.Q563Sfs*53|1|0.41|ENSG00000072518|chr11:63904791-63904791|C/-|frameshift_variant;nc|ENSG00000075413|P27448-3|MARK3;nc|ENSG00000075413|P27448-8|MARK3;nc|ENSG00000075413|P27448-4|MARK3;nc|ENSG00000075413|P27448-6|MARK3;MARK1|p.H180Qfs*3|1|0.18|ENSG00000116141|chr1:220615981-220615982|-/A|frameshift_variant;nc|ENSG00000075413|P27448-2|MARK3;ENSG00000075413|ENST00000429436|MARK3;MARK3|p.A425Sfs*19|1|0.22|ENSG00000075413|chr14:103474997-103474998|-/C|frameshift_variant;nc|ENSG00000075413|P27448-7|MARK3;ENST00000558223.5_1_14:103852366-103932133:+|nuORF;MARK2|p.K225Nfs*12|1|0.39|ENSG00000072518|chr11:63900012-63900012|A/-|frameshift_variant;nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000116141|Q9P0L2-2|MARK1	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2539672851562	2	532.253108	1062.49166	0.36337	0.0001934	1.1029	0.000587	1.4662	0.0007804	532.2536993701817	16.984	0.1498	16.984	16.923	17.073	0					6	5	2	0	0	0	0.15163	1	3969	3969		67.494	18.052	1	103050			35114	1494;2964	24204	24289	35545	35545					-0.0370824461108441
SAVRPVIEK	9	Unmodified	_SAVRPVIEK_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.537841796875	3	333.537953	997.59203	0.52064	0.00017365	-0.78729	-0.00026259	-0.26664	-8.8936E-05	333.53765378001435	20.288	0.20693	20.288	20.18	20.387	0					11	4	4	0	0	0	0.35021	1	6279	6279		53.089	17.937	1	371460			35115	3001	24205	24290	35546	35546					0.09313735714226823
SAVRPVIEK	9	Unmodified	_SAVRPVIEK_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.803466796875	2	499.803291	997.59203	-1.1605	-0.00058002	0.77462	0.00038716	-0.38586	-0.00019286	499.8040947287945	20.002	0.10032	20.002	19.931	20.031	0					6	3	2	0	0	0	0.12278	1	5520	5520		74.165	3.3488	1	117550			35116	3001	24205	24290	35547	35547					0.09313735714226823
SAVRPVIEK	9	Unmodified	_SAVRPVIEK_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8029479980469	2	499.803291	997.59203	-0.63888	-0.00031931	-0.02343	-1.1711E-05	-0.66231	-0.00033102	499.8032686134569	20.204	0.167	20.204	20.096	20.263	0					6	3	2	0	0	0	0.082776	1	6521	6521		83.647	6.8729	1	645580			35117	3001	24205	24290	35548	35548					0.09313735714226823
SAVSQSKEL	9	Unmodified	_SAVSQSKEL_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.75286865234375	2	474.753464	947.492375	-0.23874	-0.00011334	-0.98794	-0.00046903	-1.2267	-0.00058237	474.7530376443308	20.987	0.12159	20.987	20.907	21.028	0					5	3	2	0	0	0	0.3269	1	5713	5713		47.96	2.9373	1	162400			35118	4091	24206	24291	35549	35549					0.01652873309626557
SAVSQSKEL	9	Unmodified	_SAVSQSKEL_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7535095214844	2	474.753464	947.492375	-0.4587	-0.00021777	0.80942	0.00038427	0.35072	0.00016651	474.75377772919154	21.348	0.22837	21.348	21.163	21.392	0					9	5	3	0	0	0	0.10506	1	6778	6778		78.264	3.2205	1	672620			35119	4091	24206	24291	35550	35550					0.01652873309626557
SAVSQSKEL	9	Unmodified	_SAVSQSKEL_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.75433349609375	2	474.753464	947.492375	-1.5847	-0.00075236	2.5309	0.0012016	0.9462	0.00044921	474.7548062515244	21.006	0.13647	21.006	20.965	21.102	0					7	4	2	0	0	0	0.085655	1	5970	5970		82.75	5.4329	1	351950			35120	4091	24206	24291	35551	35551					0.01652873309626557
SAVSQSKEL	9	Unmodified	_SAVSQSKEL_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.75390625	2	474.753464	947.492375	-2.6322	-0.0012496	4.4677	0.002121	1.8355	0.00087141	474.7556697245669	21.104	0.18612	21.104	20.966	21.152	0					9	4	3	0	0	0	0.12834	1	6064	6064		72.879	14.649	1	304770			35121	4091	24206	24291	35552	35552					0.01652873309626557
SAVSQSKEL	9	Unmodified	_SAVSQSKEL_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7533264160156	2	474.753464	947.492375	2.3397	0.0011108	-1.8789	-0.000892	0.46086	0.0002188	474.75270671341167	21.23	0.36204	21.23	21.008	21.37	0					18	7	4	0	0	0	0.24334	1	6909	6909		56.434	1.6575	1	956290			35122	4091	24206	24291	35553	35553					0.01652873309626557
SAVSTRVYK	9	Unmodified	_SAVSTRVYK_					0	0	0		ENST00000590169.5_1_17:42275437-42275799:-|nuORF;ENST00000589805.1_1_17:42275437-42276541:-|nuORF	ENST00000590169.5_1_17:42275437-42275799:-|nuORF	ENST00000590169.5_1_17:42275437-42275799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.7850646972656	2	505.785099	1009.55564	-0.075126	-3.7997E-05	0.73493	0.00037172	0.65981	0.00033372	505.78553078232926	18.874	0.25103	18.874	18.78	19.031	0					11	7	2	0	0	0	0.10506	1	4776	4776		78.264	16.156	1	443970			35123	10939	24207	24292	35554	35554					0.05124858817521272
SAVSTRVYK	9	Unmodified	_SAVSTRVYK_					0	0	0		ENST00000590169.5_1_17:42275437-42275799:-|nuORF;ENST00000589805.1_1_17:42275437-42276541:-|nuORF	ENST00000590169.5_1_17:42275437-42275799:-|nuORF	ENST00000590169.5_1_17:42275437-42275799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.78485107421875	2	505.785099	1009.55564	-0.04228	-2.1385E-05	3.9361	0.0019908	3.8938	0.0019694	505.7853872565788	19.229	0.663	19.229	18.953	19.616	0					23	12	4	0	0	0	0.019258	1	5741	5741		123.21	43.757	1	1891600			35124	10939	24207	24292	35555	35555					0.05124858817521272
SAVSTRVYK	9	Unmodified	_SAVSTRVYK_					0	0	0		ENST00000590169.5_1_17:42275437-42275799:-|nuORF;ENST00000589805.1_1_17:42275437-42276541:-|nuORF	ENST00000590169.5_1_17:42275437-42275799:-|nuORF	ENST00000590169.5_1_17:42275437-42275799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7851867675781	2	505.785099	1009.55564	-0.39371	-0.00019913	1.2159	0.000615	0.82223	0.00041587	505.7855589023753	19.109	0.26295	19.109	19.001	19.264	0					15	5	4	0	0	0	0.032383	1	5972	5972		106.68	45.711	1	2313200			35125	10939	24207	24292	35556	35556					0.05124858817521272
SAVTALWGK	9	Unmodified	_SAVTALWGK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7630615234375	2	466.763635	931.512717	0.40659	0.00018978	-1.2981	-0.00060592	-0.89153	-0.00041613	466.7630732161999	39.092	0.25142	39.092	38.981	39.233	0					15	9	2	0	0	0	0.15163	1	14860	14860		67.494	32.293	1	190280			35126	7970	24208	24293	35557	35557					0.04422088760088627
SAVTALWGK	9	Unmodified	_SAVTALWGK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.76385498046875	2	466.763635	931.512717	-0.13347	-6.2299E-05	1.1737	0.00054784	1.0402	0.00048554	466.7638283857463	39.084	0.1828	39.084	38.96	39.143	0					11	6	2	0	0	0	0.056004	1	15346	15346		93.143	45.228	1	35985			35127	7970	24208	24293	35558	35558					0.04422088760088627
SAVTALWGK	9	Unmodified	_SAVTALWGK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.76336669921875	2	466.763635	931.512717	-0.50252	-0.00023456	0.10627	4.9602E-05	-0.39625	-0.00018496	466.76362691148773	38.99	0.25474	38.99	38.886	39.141	0					10	5	3	0	0	0	0.10915	1	15384	15384		77.318	27.876	1	214760			35128	7970	24208	24293	35559	35559					0.04422088760088627
SAVWRHFQ	8	Unmodified	_SAVWRHFQ_					0	0	0		ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENST00000462616.1_1_9:139311477-139313651:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.1783142089844	3	344.178759	1029.51445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.226	1	24.226	23.726	24.726	0								0	0	0	1.7419	1	7386	7386		35.618	12.096	1				35129	9742	24209	24294	35560	35560					0.0008714256869097881
SAVYGVQRG	9	Unmodified	_SAVYGVQRG_					0	0	0		C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.74835205078125	2	468.748516	935.482479	-2.1559	-0.0010106	1.7776	0.00083323	-0.3783	-0.00017733	468.74894294247446	27.611	0.29808	27.611	27.403	27.701	0					9	7	2	0	0	0	0.45358	1	9065	9065		37.159	1.5408	1	86003			35130	336	24210	24295	35561	35561					0.012157300948956618
SAWPGAER	8	Unmodified	_SAWPGAER_					0	0	0			REV__ENST00000492605.5_1_7:44116036-44116168:-|nuORF	REV__ENST00000492605.5_1_7:44116036-44116168:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2142028808594	2	437.214309	872.414065	-0.39911	-0.0001745	0.030546	1.3355E-05	-0.36857	-0.00016114	437.2143256497197	22.423	0.40274	22.423	22.323	22.726	0					21	9	4	0	0	0	0.60719	1	7290	7290		47.916	47.916	1	3287900	+		35131	19730	24211	24296	35562	35562					-0.027245144849530334
SAWPGAER	8	Unmodified	_SAWPGAER_					0	0	0			REV__ENST00000492605.5_1_7:44116036-44116168:-|nuORF	REV__ENST00000492605.5_1_7:44116036-44116168:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.21435546875	2	437.214309	872.414065	0.72338	0.00031627	-0.78323	-0.00034244	-0.059841	-2.6163E-05	437.21389391863596	22.329	0.51538	22.329	22.223	22.739	0					15	10	2	0	0	0	0.46905	1	7420	7420		63.306	7.8021	1	2603700	+		35132	19730	24211	24296	35563	35563					-0.027245144849530334
SAWRSLEVK	9	Unmodified	_SAWRSLEVK_					0	0	0			REV__ENST00000602404.5_1_22:42481673-42481847:-|nuORF	REV__ENST00000602404.5_1_22:42481673-42481847:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.20147705078125	3	359.201341	1074.58219	-0.91122	-0.00032731	0.86861	0.00031201	-0.042606	-1.5304E-05	359.2016269161783	33.464	0.18523	33.464	33.385	33.571	0					12	7	2	0	0	0	0.35021	1	11225	11225		45.972	5.1941	1	120640	+		35133	20606	24212	24297	35564	35564					0.04788547708835722
SAWWGPGGRR	10	Unmodified	_SAWWGPGGRR_					0	0	0		ENST00000585075.1_1_17:73267491-73267800:+|nuORF;ENST00000582668.1_1_17:73267497-73269738:+|nuORF	ENST00000585075.1_1_17:73267491-73267800:+|nuORF	ENST00000585075.1_1_17:73267491-73267800:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.19244384765625	3	377.19318	1128.55771	0.51368	0.00019376	-1.6082	-0.0006066	-1.0945	-0.00041285	377.1924650239623	26.571	0.15125	26.571	26.483	26.634	0					9	5	2	0	0	0	0.60281	1	8096	8096		33.922	9.4024	1	96639			35134	10878	24213	24298	35565	35565					-0.0014266765401771409
SAWWGPGGRR	10	Unmodified	_SAWWGPGGRR_					0	0	0		ENST00000585075.1_1_17:73267491-73267800:+|nuORF;ENST00000582668.1_1_17:73267497-73269738:+|nuORF	ENST00000585075.1_1_17:73267491-73267800:+|nuORF	ENST00000585075.1_1_17:73267491-73267800:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.1926574707031	3	377.19318	1128.55771	0.80796	0.00030476	-1.9424	-0.00073267	-1.1345	-0.00042791	377.1925509519018	26.81	0.18672	26.81	26.671	26.858	0					12	4	4	0	0	0	0.54861	1	9284	9284		40.058	3.7405	1	1366100			35135	10878	24213	24298	35566	35566					-0.0014266765401771409
SAYAFSHQR	9	Unmodified	_SAYAFSHQR_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.75732421875	2	533.756872	1065.49919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.142	1	20.142	19.642	20.642	0								0	0	0	0.14179	1	5341	5341		54.722	19.104	1				35136	1666	24214	24299	35567	35567					-0.030937690191422007
SAYAFSHQR	9	Unmodified	_SAYAFSHQR_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7572021484375	2	533.756872	1065.49919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.21	1	20.21	19.71	20.71	0								0	0	0	0.29421	1	5607	5607		36.447	9.7538	1				35137	1666	24214	24299	35568	35568					-0.030937690191422007
SAYAFSHQR	9	Unmodified	_SAYAFSHQR_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.75732421875	2	533.756872	1065.49919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.282	1	20.282	19.782	20.782	0								0	0	0	0.17166	1	5673	5673		47.96	9.1534	1				35138	1666	24214	24299	35569	35569					-0.030937690191422007
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.7566528320312	2	550.756007	1099.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.757	1	42.757	42.257	43.257	0								0	0	0	0.22106	1	16769	16769		47.916	13.743	1				35139	2953	24215	24300	35570	35570					-0.048308228277846865
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7562255859375	2	550.756007	1099.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.767	1	42.767	42.267	43.267	0								0	0	0	0.24724	1	17088	17088		44.117	13.613	1				35140	2953	24215	24300	35571	35571					-0.048308228277846865
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.3214721679688	2	610.321514	1218.62847	-0.72753	-0.00044403	0.78796	0.00048091	0.060427	3.688E-05	610.322030141016	32.345	0.21372	32.345	32.251	32.464	0					9	5	3	0	0	0	0.15289	1	11868	11868		83.647	28.871	1	129350			35141	7410	24216	24301	35572	35572					0.02790567820261458
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.216552734375	3	407.216768	1218.62847	1.1684	0.00047577	-1.4207	-0.00057855	-0.25238	-0.00010277	407.2161861144513	32.327	0.46326	32.327	32.225	32.688	0					18	11	3	0	0	0	0.58308	1	12286	12286		36.318	7.7409	1	441350			35142	7410	24216	24301	35573	35573					0.02790567820261458
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.2165832519531	3	407.216768	1218.62847	0.71696	0.00029196	-0.73136	-0.00029782	-0.0144	-5.864E-06	407.2163805672538	32.312	0.31948	32.312	32.203	32.523	0					8	6	2	0	0	0	0.61238	1	12184	12184		32.751	6.6872	1	423190			35143	7410	24216	24301	35574	35574					0.02790567820261458
SAYGGDQNY	9	Unmodified	_SAYGGDQNY_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.69598388671875	2	487.696146	973.377739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.287	1	27.287	26.787	27.787	0								0	0	0	0.10826	1	9514	9514		69.628	21.97	1				35144	5023	24217	24302	35575	35575					-0.11001436172330159
SAYGGDQNY	9	Unmodified	_SAYGGDQNY_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.6954345703125	2	487.696146	973.377739	-0.53221	-0.00025956	-0.19046	-9.2887E-05	-0.72267	-0.00035244	487.69591427897296	27.213	0.21985	27.213	27.103	27.323	0					7	4	2	0	0	0	0.34452	1	9728	9728		46.457	18.375	1	136830			35145	5023	24217	24302	35576	35576					-0.11001436172330159
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.23699951171875	2	473.23745	944.460347	-0.022384	-1.0593E-05	-0.43848	-0.00020751	-0.46087	-0.0002181	473.2372255730676	26.091	0.23054	26.091	26.034	26.264	0					15	8	3	0	0	0	0.063171	1	7889	7889		90.601	37.249	1	230500			35146	6915	24218	24303	35577	35577					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2372741699219	2	473.23745	944.460347	0.24737	0.00011706	-0.19764	-9.3528E-05	0.049732	2.3535E-05	473.2371295172678	26.331	0.42257	26.331	26.125	26.547	0					22	10	3	0	0	0	0.026538	1	9079	9079		112.41	64.754	1	2213800			35147	6915	24218	24303	35578	35578					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2373046875	2	473.23745	944.460347	-1.5429	-0.00073017	1.3388	0.00063356	-0.20415	-9.6609E-05	473.23794565045165	26.117	0.21929	26.117	26.026	26.245	0					16	7	4	0	0	0	0.12834	1	8164	8164		72.879	37.261	1	325290			35148	6915	24218	24303	35579	35579					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2372741699219	2	473.23745	944.460347	0.59722	0.00028263	-0.96287	-0.00045567	-0.36566	-0.00017304	473.23694924756643	26.367	0.31439	26.367	26.263	26.577	0					15	6	3	0	0	0	0.037924	1	9440	9440		101.25	57.136	1	1427400			35149	6915	24218	24303	35580	35580					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2374267578125	2	473.23745	944.460347	-0.14126	-6.6849E-05	-0.31386	-0.00014853	-0.45511	-0.00021538	473.23740561766294	26.187	0.14006	26.187	26.093	26.233	0					5	3	2	0	0	0	0.11898	1	8402	8402		75.043	25.602	1	66888			35150	6915	24218	24303	35581	35581					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2369079589844	2	473.23745	944.460347	-0.50244	-0.00023777	-0.31476	-0.00014896	-0.8172	-0.00038673	473.23725000978766	26.187	0.18093	26.187	26.121	26.302	0					11	4	3	0	0	0	0.047855	1	8397	8397		96.034	53.559	1	286560			35151	6915	24218	24303	35582	35582					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2372131347656	2	473.23745	944.460347	-0.57957	-0.00027428	0.24397	0.00011546	-0.3356	-0.00015882	473.23755632796235	26.306	0.26686	26.306	26.202	26.469	0					8	5	2	0	0	0	0.047855	1	9289	9289		96.034	60.415	1	832530			35152	6915	24218	24303	35583	35583					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2372131347656	2	473.23745	944.460347	0.65509	0.00031001	-1.085	-0.00051344	-0.42987	-0.00020343	473.2368351973208	26.29	0.36842	26.29	26.185	26.553	0					17	7	4	0	0	0	0.047855	1	9280	9280		96.034	53.559	1	2491000			35153	6915	24218	24303	35584	35584					-0.014104943735219422
SAYKNKIAI	9	Unmodified	_SAYKNKIAI_					0	0	0			REV__ENSG00000157456|ENST00000288207|CCNB2	REV__ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53424072265625	3	336.53432	1006.58113	0.24136	8.1227E-05	-0.55762	-0.00018766	-0.31626	-0.00010643	336.5341107950799	33.422	0.9894	33.422	33.084	34.073	0					74	39	2	0	0	0	0.61124	1	11062	11062		14.137	0.68308	1	153680	+		35154	15658	24219	24304	35585	35585					0.0781033333993264
SAYLGSEQYK	10	Unmodified	_SAYLGSEQYK_					0	0	0		nc|ENSG00000171202|Q9H061-2|TMEM126A;ENSG00000171202|ENST00000304511|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.2781372070312	2	573.277303	1144.54005	2.0114	0.0011531	-1.7915	-0.001027	0.21988	0.00012605	573.2768345473403	26.963	0.26176	26.963	26.761	27.023	0					14	5	4	0	0	0	0.080628	1	9730	9730		99.013	27.135	1	514890			35155	6281	24220	24305	35586	35586					-0.026434724901946538
SAYQNHLILK	10	Unmodified	_SAYQNHLILK_					0	0	0		nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.2238464355469	3	396.224146	1185.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.624	1	27.624	27.124	28.124	0								0	0	0	0.40002	1	9671	9671		51.193	20.624	1				35156	5380	24221	24306	35587	35587					0.06520792288711164
SAYRALAGA	9	Unmodified	_SAYRALAGA_					0	0	0		DNAH7|p.V1621A|1|0.09|ENSG00000118997|chr2:195895010-195895010|A/G|missense_variant	DNAH7|p.V1621A|1|0.09|ENSG00000118997|chr2:195895010-195895010|A/G|missense_variant	DNAH7|p.V1621A|1|0.09|ENSG00000118997|chr2:195895010-195895010|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.23736572265625	2	440.237784	878.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.488	1	17.488	16.988	17.988	0								0	0	0	0.31623	1	5203	5203		31.955	3.7006	1				35157	820	24222	24307	35588	35588					0.016923450661693096
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.8153686523438	2	538.81419	1075.61383	1.5184	0.00081812	0.82162	0.0004427	2.34	0.0012608	538.8146789016039	14.018	0.1181	14.018	13.944	14.062	0					13	6	3	0	0	0	0.28504	1	2823	2823		44.377	10.862	1	199040			35158	9883	24223	24308	35589	35589					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.54541015625	3	359.545219	1075.61383	0.44878	0.00016136	0.01011	3.6349E-06	0.45889	0.00016499	359.545222316303	14.032	0.14157	14.032	13.92	14.062	0					11	7	2	0	0	0	0.36892	1	2825	2825		44.377	3.599	1	50758			35159	9883	24223	24308	35590	35590					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8148803710938	2	538.81419	1075.61383	2.0137	0.001085	-1.1785	-0.000635	0.83514	0.00044999	538.8135034442467	14.341	0.56717	14.341	14.223	14.79	0					27	14	4	0	0	0	0.17062	1	3465	3465		49.536	7.0616	1	3002800			35160	9883	24223	24308	35591	35591					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.8148193359375	2	538.81419	1075.61383	1.3993	0.00075394	-0.60058	-0.0003236	0.79868	0.00043034	538.8139132355584	14.292	0.25989	14.292	14.133	14.393	0					13	5	4	0	0	0	0.13907	1	3662	3662		63.534	19.157	1	1098100			35161	9883	24223	24308	35592	35592					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.5450744628906	3	359.545219	1075.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.27	1	14.27	13.77	14.77	0								0	0	0	0.069826	1	3664	3664		80.455	31.013	1				35162	9883	24223	24308	35593	35593					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.5450134277344	3	359.545219	1075.61383	0.40649	0.00014615	-0.31253	-0.00011237	0.093951	3.378E-05	359.545039810213	14.075	0.11172	14.075	13.997	14.109	0					6	4	2	0	0	0	0.22837	1	2925	2925		58.23	22.612	1	108340			35163	9883	24223	24308	35594	35594					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.814453125	2	538.81419	1075.61383	0.68981	0.00037168	0.12552	6.7631E-05	0.81533	0.00043931	538.8142312263225	14.265	0.22068	14.265	14.154	14.375	0					12	4	3	0	0	0	0.024312	1	3518	3518		88.177	15.298	1	2094100			35164	9883	24223	24308	35595	35595					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.5451354980469	3	359.545219	1075.61383	-0.064632	-2.3238E-05	-0.1503	-5.4039E-05	-0.21493	-7.7277E-05	359.5451393616363	14.265	0.32001	14.265	14.103	14.423	0					12	6	3	0	0	0	0.095583	1	3519	3519		80.455	41.202	1	1380500			35165	9883	24223	24308	35596	35596					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		ENST00000473871.1_1_13:37583848-37586479:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	ENST00000473871.1_1_13:37583848-37586479:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8145751953125	2	538.81419	1075.61383	2.0455	0.0011022	-0.66538	-0.00035852	1.3802	0.00074365	538.8137295484102	14.293	0.37097	14.293	14.137	14.508	0					17	7	4	0	0	0	0.022698	1	3510	3510		101.25	29.375	1	1086200			35166	9883	24223	24308	35597	35597					0.07904540462777732
SAYSGHNTK	9	Unmodified	_SAYSGHNTK_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7275695800781	2	482.727781	963.441008	0.68525	0.00033079	-0.9156	-0.00044199	-0.23036	-0.0001112	482.72731995867446	12.307	0.29819	12.307	12.223	12.521	0					13	7	3	0	0	0	0.026848	1	2745	2745		112.11	66.155	1	1743200			35167	3617	24224	24309	35598	35598					-0.042174506644187204
SCANDGHCHPA	11	Unmodified	_SCANDGHCHPA_					0	0	0		MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant;nc|ENSG00000162591|O75095-2|MEGF6;MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant;MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant;ENSG00000162591|ENST00000356575|MEGF6	MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant	MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2069702148438	2	556.205832	1110.39711	-0.12149	-6.7572E-05	2.8914	0.0016082	2.7699	0.0015406	556.2071134849538	17.342	0.3005	17.342	17.183	17.483	0					9	6	3	0	0	0	0.79221	1	5165	5165		16.717	0.24424	1	306470			35168	11358	24225	24310	35599	35599					-0.15367126424712296
SCCPMSCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PMSC(Carbamidomethyl (C))AK_	SC(0.001)C(0.999)PMSC(1)AK		SC(-32)C(32)PMSC(59)AK		0	2	0		ENSG00000205362|ENST00000290705|MT1A	ENSG00000205362|ENST00000290705|MT1A	ENSG00000205362|ENST00000290705|MT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8297119140625	2	522.19249	1042.37043	-0.075706	-3.9533E-05	-1.061	-0.00055405	-1.1367	-0.00059359	522.1927225311948	16.887	0.74847	16.887	16.785	17.534	0					45	15	6	0	0	0	0.1424	1	4908	4908		69.628	6.0938	3	6639600			35169	7749	24226	24311	35600	35600	333;334				-0.14906274631925953
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SCC(1)PVGC(1)AK		SC(-38)C(38)PVGC(87)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.201171875	2	491.201173	980.387792	-0.14677	-7.2092E-05	-1.1113	-0.00054588	-1.2581	-0.00061797	491.2009419599982	18	0.22502	18	17.918	18.143	0					17	6	4	0	0	0	0.034359	1	4401	4401		104.75	58.795	3	471690		+	35170	648	24227	24312	35601	35601	20;21				-0.10318611034608693
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SCC(1)PVGC(1)AK		SC(-41)C(41)PVGC(97)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.200927734375	2	491.201173	980.387792	0.80948	0.00039762	-2.369	-0.0011637	-1.5595	-0.00076603	491.2005411030979	18.301	0.48009	18.301	18.254	18.734	0					27	11	5	0	0	0	0.014688	1	5338	5338		131.03	67.725	3	3361900		+	35171	648	24227	24312	35602	35602	20;21				-0.10318611034608693
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SC(0.002)C(0.998)PVGC(1)AK		SC(-27)C(27)PVGC(77)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2010803222656	2	491.201173	980.387792	-1.2605	-0.00061916	-0.32733	-0.00016078	-1.5878	-0.00077995	491.2016006209574	17.991	0.38085	17.991	17.909	18.29	0					23	12	4	0	0	0	0.055856	1	4630	4630		93.195	47.244	3	995590		+	35172	648	24227	24312	35603	35603	20;21				-0.10318611034608693
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SCC(1)PVGC(1)AK		SC(-39)C(39)PVGC(91)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.20111083984375	2	491.201173	980.387792	0.58623	0.00028796	-1.7995	-0.00088392	-1.2133	-0.00059597	491.20083159169127	18.25	0.57234	18.25	18.139	18.711	0					30	11	5	0	0	0	0.021961	1	5578	5578		118.74	63.239	3	4821400		+	35173	648	24227	24312	35604	35604	20;21				-0.10318611034608693
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SCC(1)PVGC(1)AK		SC(-39)C(39)PVGC(90)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2009582519531	2	491.201173	980.387792	-0.072658	-3.5689E-05	-1.5928	-0.0007824	-1.6655	-0.00081808	491.201007396162	18.059	0.2541	18.059	17.955	18.209	0					15	5	4	0	0	0	0.030949	1	4646	4646		108.09	42.622	3	569920		+	35174	648	24227	24312	35605	35605	20;21				-0.10318611034608693
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SC(0.032)C(0.968)PVGC(1)AK		SC(-15)C(15)PVGC(59)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2009582519531	2	491.201173	980.387792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.072	1	18.072	17.572	18.572	0								0	0	0	0.10826	1	4644	4644		69.628	36.112	3			+	35175	648	24227	24312	35606	35606	20;21				-0.10318611034608693
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SCC(1)PVGC(1)AK		SC(-50)C(50)PVGC(110)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.200927734375	2	491.201173	980.387792	0.80533	0.00039558	-2.2296	-0.0010952	-1.4242	-0.00069959	491.2004746438386	18.259	0.51194	18.259	18.109	18.621	0					28	10	4	0	0	0	0.019882	1	5419	5419		122.18	56.373	3	3572900		+	35176	648	24227	24312	35607	35607	20;21				-0.10318611034608693
SCCPVGCAK	9	2 Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGC(Carbamidomethyl (C))AK_	SCC(1)PVGC(1)AK		SC(-41)C(41)PVGC(100)AK		0	2	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2010498046875	2	491.201173	980.387792	2.6947	0.0013236	-3.9749	-0.0019525	-1.2802	-0.00062884	491.1997414884605	18.247	0.4135	18.247	18.142	18.555	0					29	8	5	0	0	0	0.01768	1	5436	5436		125.81	70.31	3	2817200		+	35177	648	24227	24312	35608	35608	20;21				-0.10318611034608693
SCCPVGCAK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCAK_	SC(0.004)C(0.995)PVGC(0.001)AK		SC(-24)C(24)PVGC(-29)AK		0	1	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.6901550292969	2	462.690441	923.366329	0.11149	5.1585E-05	-1.9819	-0.00091702	-1.8704	-0.00086543	462.69004207495453	19.198	0.81721	19.198	19.095	19.912	0					49	24	4	0	0	0	0.13267	1	4904	4904		71.877	27.761	3	1249500		+	35178	648	24227	24313	35609	35609	20;21				-0.09841996063312308
SCCPVGCAK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCAK_	SC(0.075)C(0.925)PVGCAK		SC(-11)C(11)PVGC(-40)AK		0	1	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.690185546875	2	462.690441	923.366329	0.67603	0.00031279	-2.3105	-0.001069	-1.6344	-0.00075624	462.6898345863178	19.509	1.6686	19.509	19.356	21.025	0					91	37	4	0	0	0	0.0406	1	5882	5882		98.629	48.605	3	7206300		+	35179	648	24227	24313	35610	35610	20;21				-0.09841996063312308
SCCPVGCAK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCAK_	SC(0.002)C(0.998)PVGCAK		SC(-27)C(27)PVGC(-43)AK		0	1	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.69000244140625	2	462.690441	923.366329	-0.14545	-6.73E-05	-2.1906	-0.0010136	-2.336	-0.0010809	462.6900584093726	19.417	2.4599	19.417	19.132	21.592	0					122	49	6	0	0	0	0.037569	3	6297	6110;6297;6755		101.6	52.657	3	19678000		+	35180	648	24227	24313	35611;35612;35613	35612	20;21				-0.09841996063312308
SCCPVGCAK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCAK_	SC(0.002)C(0.997)PVGCAK		SC(-26)C(26)PVGC(-37)AK		0	1	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.69012451171875	2	462.690441	923.366329	-0.13897	-6.4299E-05	-1.4526	-0.00067209	-1.5915	-0.00073639	462.6902194756418	19.255	0.91239	19.255	19.164	20.076	0					45	21	4	0	0	0	0.048471	2	5182	5182;5341		95.815	44.414	3	3325500		+	35181	648	24227	24313	35614;35615	35614	20;21				-0.09841996063312308
SCCPVGCAK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCAK_	SCC(1)PVGCAK		SC(-40)C(38)PVGC(-38)AK		0	1	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.6904296875	2	462.690441	923.366329	-0.47243	-0.00021859	-1.6916	-0.0007827	-2.1641	-0.0010013	462.69030489543076	19.401	3.3127	19.401	19.293	22.605	0					147	66	5	0	0	0	0.032052	3	5975	5975;6147;6317		107.01	55.672	3	30853000		+	35182	648	24227	24313	35616;35617;35618	35616	20;21				-0.09841996063312308
SCCPVGCAK	9	Unmodified	_SCCPVGCAK_					0	0	0		ENST00000562017.1_1_16:56643131-56643263:+|nuORF;ENST00000330439.6_1_16:56660742-56660880:+|nuORF;ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000205364|ENST00000379818|MT1M;ENSG00000187193|ENST00000394485|MT1X;ENSG00000169688|ENST00000334346|MT1B;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENST00000567300.1_1_16:56642646-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	ENST00000562017.1_1_16:56643131-56643263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.1794738769531	2	434.179709	866.344865	0.11567	5.0221E-05	-0.88131	-0.00038265	-0.76564	-0.00033243	434.1793648242685	22.188	0.50225	22.188	22.089	22.591	0					18	11	2	0	0	0	0.2873	1	7158	7158		51.335	3.6781	1	169520		+	35183	648	24227	24314	35619	35619					-0.0936538109203866
SCCPVGCSK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSK_	SC(0.005)C(0.99)PVGC(0.005)SK		SC(-23)C(23)PVGC(-23)SK		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.6875	2	470.687898	939.361243	0.15996	7.5293E-05	-1.4509	-0.00068292	-1.2909	-0.00060763	470.6874851396528	18.604	0.30032	18.604	18.516	18.816	0					17	7	3	0	0	0	0.098791	1	5483	5483		79.713	20.931	3	511520			35184	7558	24228	24315	35620	35620	321				-0.11086299925932508
SCCPVGCSK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSK_	SC(0.06)C(0.937)PVGC(0.003)SK		SC(-12)C(12)PVGC(-24)SK		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.6885070800781	2	470.687898	939.361243	3.848	0.0018112	-3.7124	-0.0017474	0.13565	6.3849E-05	470.6862229370025	18.301	0.13688	18.301	18.265	18.402	0					6	5	2	0	0	0	0.28897	1	4760	4760		51.193	19.238	3	47213			35185	7558	24228	24315	35621	35621	321				-0.11086299925932508
SCCPVGCSK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSK_	SC(0.004)C(0.996)PVGCSK		SC(-24)C(24)PVGC(-50)SK		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.6874084472656	2	470.687898	939.361243	-0.12481	-5.8744E-05	-1.3435	-0.00063237	-1.4683	-0.00069112	470.6875825856466	18.519	0.44075	18.519	18.459	18.9	0					18	9	3	0	0	0	0.032383	1	5707	5707		106.68	45.711	3	583610			35186	7558	24228	24315	35622	35622	321				-0.11086299925932508
SCCPVGCSK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSK_	SC(0.001)C(0.998)PVGC(0.001)SK		SC(-33)C(29)PVGC(-29)SK		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.6879577636719	2	470.687898	939.361243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.377	1	18.377	17.877	18.877	0								0	0	0	0.04624	1	4783	4783		87.696	24.39	3				35187	7558	24228	24315	35623	35623	321				-0.11086299925932508
SCCPVGCSK	9	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSK_	SC(0.008)C(0.976)PVGC(0.016)SK		SC(-21)C(18)PVGC(-18)SK		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.6872863769531	2	470.687898	939.361243	-0.54283	-0.0002555	-0.074409	-3.5023E-05	-0.61724	-0.00029053	470.6878342585355	18.53	0.36263	18.53	18.421	18.784	0					12	7	2	0	0	0	0.16806	1	5553	5553		65.465	21.349	3	880380			35188	7558	24228	24315	35624	35624	321				-0.11086299925932508
SCCPVGCSKC	10	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSKC_	SC(0.001)C(0.999)PVGCSKC		SC(-32)C(32)PVGC(-49)SKC(-49)		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.19287109375	2	522.19249	1042.37043	0.083403	4.3553E-05	-1.1757	-0.00061396	-1.0923	-0.00057041	522.1926240018508	16.937	0.92944	16.937	16.846	17.776	0					61	23	5	0	0	0	0.14151	1	4679	4679		88.177	8.4643	4	9950100			35189	7558	24229	24316	35625	35625	321				-0.14906274631925953
SCCPVGCSKC	10	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSKC_	SC(0.004)C(0.994)PVGC(0.002)SKC		SC(-24)C(24)PVGC(-28)SKC(-33)		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.4639892578125	3	348.464086	1042.37043	0.49928	0.00017398	-1.8709	-0.00065195	-1.3717	-0.00047797	348.46383426765465	16.937	0.45622	16.937	16.846	17.302	0					37	11	5	0	0	0	0.3029	2	4694	4680;4694		66.92	36.602	4	2873300			35190	7558	24229	24316	35626;35627	35627	321				-0.14906274631925953
SCCPVGCSKC	10	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSKC_	SC(0.011)C(0.989)PVGCSKC		SC(-20)C(20)PVGC(-41)SKC(-41)		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.1927490234375	2	522.19249	1042.37043	0.32895	0.00017177	-1.3324	-0.00069577	-1.0035	-0.000524	522.1925402604029	16.677	0.39317	16.677	16.6	16.993	0					43	16	5	0	0	0	0.41384	1	4038	4038		54.722	8.7501	4	1187200			35191	7558	24229	24316	35628	35628	321				-0.14906274631925953
SCCPVGCSKC	10	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSKC_	SC(0.011)C(0.971)PVGC(0.009)SKC(0.009)		SC(-20)C(20)PVGC(-20)SKC(-20)		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.4640808105469	3	348.464086	1042.37043	-1.9792	-0.00068966	1.4058	0.00048986	-0.57338	-0.0001998	348.46473449883894	16.708	0.22816	16.708	16.657	16.885	0					13	7	3	0	0	0	0.48255	1	4013	4013		47.228	12.076	4	195810			35192	7558	24229	24316	35629	35629	321				-0.14906274631925953
SCCPVGCSKC	10	Carbamidomethyl (C)	_SCC(Carbamidomethyl (C))PVGCSKC_	SC(0.001)C(0.998)PVGCSKC		SC(-29)C(29)PVGC(-35)SKC(-40)		0	1	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.4639587402344	3	348.464086	1042.37043	3.0338	0.0010572	-4.4206	-0.0015404	-1.3868	-0.00048323	348.46290684067515	16.914	0.5626	16.914	16.714	17.276	0					28	11	3	0	0	0	0.3029	1	4794	4794		66.92	32.748	4	1239700			35193	7558	24229	24316	35630	35630	321				-0.14906274631925953
SCGGPGPN	8	Unmodified	_SCGGPGPN_					0	0	0		ENST00000396033.6_1_10:33246721-33246775:-|nuORF	ENST00000396033.6_1_10:33246721-33246775:-|nuORF	ENST00000396033.6_1_10:33246721-33246775:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.6395568847656	2	344.639588	687.264624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.056	1	44.056	43.556	44.556	0								0	0	0	1.7419	1	16563	16563		12.959	3.4886	1				35194	9201	24230	24317	35631	35631					-0.09151783099218846
SCGGPGPN	8	Unmodified	_SCGGPGPN_					0	0	0		ENST00000396033.6_1_10:33246721-33246775:-|nuORF	ENST00000396033.6_1_10:33246721-33246775:-|nuORF	ENST00000396033.6_1_10:33246721-33246775:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.6399230957031	2	344.639588	687.264624	1.5231	0.00052493	-3.1395	-0.001082	-1.6164	-0.00055706	344.6390375326509	43.932	0.45012	43.932	43.699	44.15	0					29	16	3	0	0	0	0.79882	1	17595	17595		19.36	4.6959	1	197390			35195	9201	24230	24317	35632	35632					-0.09151783099218846
SCGITLSRIT	10	Unmodified	_SCGITLSRIT_					0	0	0			REV__ENST00000464993.1_1_X:152722593-152735946:-|nuORF	REV__ENST00000464993.1_1_X:152722593-152735946:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.8590087890625	3	350.858586	1049.55393	0.16648	5.841E-05	0.43223	0.00015165	0.59871	0.00021006	350.85871743303375	30.255	0.26079	30.255	30.159	30.42	0					23	9	4	0	0	0	0.58896	1	9597	9597		32.751	1.2207	1	546690	+		35196	17562	24231	24318	35633	35633					0.031134817372503676
SCGKPQQK	8	Unmodified	_SCGKPQQK_					0	0	0		ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2237243652344	2	438.22382	874.433086	-0.5741	-0.00025158	0.30014	0.00013153	-0.27396	-0.00012005	438.2239586519235	18.333	0.56085	18.333	18.076	18.636	0					25	11	3	0	0	0	0.29152	1	5454	5454		85.359	5.9085	1	1059100			35197	8161	24232	24319	35634	35634					-0.009153011855573823
SCGMWQVN	8	Unmodified	_SCGMWQVN_					0	0	0			REV__nc|ENSG00000112242|O00716-2|E2F3	REV__nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.690185546875	2	462.688755	923.362958	-0.13897	-6.4299E-05	2.1901	0.0010133	2.0511	0.00094902	462.6902194756418	19.255	0.91239	19.255	19.164	20.076	0					45	21	4	0	0	0	0.66372	1	5548	5548		38.806	3.1879	1	3325500	+		35198	13994	24233	24320	35635	35635					-0.10178922845682337
SCGPPGMTK	9	Unmodified	_SCGPPGMTK_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.1986999511719	2	439.198956	876.383359	0.5773	0.00025355	-1.5899	-0.00069828	-1.0126	-0.00044473	439.1985145329485	21.12	1.3678	21.12	20.564	21.932	0					69	31	4	0	0	0	0.095583	1	6604	6604		80.455	23.734	1	1581400			35199	4374;4202	24234	24321	35636	35636					-0.059777521858677574
SCGPPGMTK	9	Unmodified	_SCGPPGMTK_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.1986999511719	2	439.198956	876.383359	-0.56783	-0.00024939	-0.61457	-0.00026992	-1.1824	-0.00051931	439.19896261774215	21.016	1.51	21.016	20.544	22.054	0					68	30	5	0	0	0	0.34452	1	6705	6705		46.457	3.9823	1	1527100			35200	4374;4202	24234	24321	35637	35637					-0.059777521858677574
SCGPPGMTK	9	Unmodified	_SCGPPGMTK_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.19866943359375	2	439.198956	876.383359	0.68548	0.00030106	-2.0868	-0.00091652	-1.4013	-0.00061545	439.19840800404376	21.032	1.112	21.032	20.575	21.687	0					43	22	5	0	0	0	0.037924	1	6791	6791		101.25	15.893	1	1118200			35201	4374;4202	24234	24321	35638	35638					-0.059777521858677574
SCGTWLPN	8	Unmodified	_SCGTWLPN_					0	0	0		AASDHPPT|p.S29N|1|0.37|ENSG00000149313|chr11:106077796-106077796|G/A|missense_variant	AASDHPPT|p.S29N|1|0.37|ENSG00000149313|chr11:106077796-106077796|G/A|missense_variant	AASDHPPT|p.S29N|1|0.37|ENSG00000149313|chr11:106077796-106077796|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.1991882324219	2	439.19727	876.379988	3.1593	0.0013876	0.78875	0.00034642	3.9481	0.001734	439.19776809800874	20.834	0.459	20.834	20.563	21.022	0					19	14	2	0	0	0	0.67394	1	5835	5835		37.159	3.6435	1	100510			35202	0	24235	24322	35639	35639					-0.06314678968226417
SCIIQSILDS	10	Unmodified	_SCIIQSILDS_					0	0	0		nc|ENSG00000254685|O14772-2|FPGT;ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT	nc|ENSG00000254685|O14772-2|FPGT	nc|ENSG00000254685|O14772-2|FPGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7799682617188	2	539.776082	1077.53761	4.9147	0.0026528	1.9832	0.0010705	6.8979	0.0037233	539.7771780427574	30.398	0.23354	30.398	30.316	30.55	0					18	7	3	0	0	0	0.65213	1	9973	9973		27.882	1.1893	1	264420			35203	8011	24236	24323	35640	35640					0.001943557804906959
SCIKFKTFK	9	Unmodified	_SCIKFKTFK_					0	0	0		ENST00000560392.5_1_15:80390802-80390838:+|nuORF	ENST00000560392.5_1_15:80390802-80390838:+|nuORF	ENST00000560392.5_1_15:80390802-80390838:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.8755187988281	3	367.875689	1100.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.719	1	25.719	25.219	26.219	0								0	0	0	0.29356	1	8823	8823		36.447	9.7538	1				35204	10691	24237	24324	35641	35641					0.05895850501951827
SCISFLGVLL	10	Unmodified	_SCISFLGVLL_					0	0	0		ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000552141.5_1_12:49495806-49497560:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2957763671875	2	526.296453	1050.57835	3.4598	0.0018209	-2.5533	-0.0013438	0.90653	0.0004771	526.2951771516252	47.95	0.21478	47.95	47.859	48.074	0					22	11	3	0	0	0	0.52275	1	19082	19082		30.504	0	1	195360			35205	4340	24238	24325	35642	35642					0.05508741890798774
SCIWAACTVSG	11	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))IWAACTVSG_	SC(1)IWAACTVSG		SC(35)IWAAC(-35)TVSG		0	1	0		ENSG00000166603|ENST00000299766|MC4R	ENSG00000166603|ENST00000299766|MC4R	ENSG00000166603|ENST00000299766|MC4R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.7481079101562	2	577.752084	1153.48961	-0.4138	-0.00023907	-4.0695	-0.0023511	-4.4833	-0.0025902	577.7483685735058	15.408	0.15731	15.408	15.259	15.417	0					13	3	6	0	0	0	0.49805	1	4196	4196		44.377	10.456	2	1555600			35206	5920	24239	24326	35643	35643	248				-0.08099041411219332
SCLGEVGPQK	10	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))LGEVGPQK_	SC(1)LGEVGPQK		SC(60)LGEVGPQK		0	1	0			REV__ENST00000511829.5_1_5:79738958-79744113:+|nuORF	REV__ENST00000511829.5_1_5:79738958-79744113:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2805786132812	2	537.766049	1073.51754	0.29539	0.00015885	-2.5094	-0.0013494	-2.214	-0.0011906	537.7646857223082	20.255	0.11833	20.255	20.195	20.314	0					4	2	2	0	0	0	0.36476	1	6523	6523		60.118	7.8191	1	96989	+		35207	12993	24240	24327	35644	35644	507				-0.01627395159448497
SCNLEDCPDN	10	Unmodified	_SCNLEDCPDN_					0	0	0		ENST00000464589.1_1_21:28211878-28212356:-|nuORF;ENSG00000154734|ENST00000284984|ADAMTS1	ENST00000464589.1_1_21:28211878-28212356:-|nuORF	ENST00000464589.1_1_21:28211878-28212356:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.199462890625	2	555.197338	1108.38012	0.5883	0.00032662	1.3649	0.0007578	1.9532	0.0010844	555.1979775826509	11.869	0.58713	11.869	11.766	12.353	0					48	20	5	0	0	0	0.76979	1	2450	2450		9.1829	1.4926	1	1988900			35208	5100	24241	24328	35645	35645					-0.16973091821182607
SCNQLDTGV	9	Unmodified	_SCNQLDTGV_					0	0	0		ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.70794677734375	2	468.708199	935.401846	0.27232	0.00012764	-0.9094	-0.00042624	-0.63709	-0.00029861	468.70782879062494	20.117	0.38475	20.117	19.971	20.356	0					16	8	3	0	0	0	0.48389	1	6201	6201		34.173	0	1	257950			35209	5369	24242	24329	35646	35646					-0.06843919010316313
SCPGQSGET	9	Unmodified	_SCPGQSGET_					0	0	0		ENST00000353548.10_1_12:122692786-122692909:-|nuORF	ENST00000353548.10_1_12:122692786-122692909:-|nuORF	ENST00000353548.10_1_12:122692786-122692909:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.1719055175781	2	433.17145	864.328346	-0.7644	-0.00033112	1.1749	0.00050894	0.41052	0.00017783	433.17210082765433	22.568	0.25968	22.568	22.47	22.729	0					14	8	2	0	0	0	0.48389	1	6659	6659		34.173	0.65696	1	110330			35210	8779	24243	24330	35647	35647					-0.10924467452787212
SCPIAKLPKV	10	Unmodified	_SCPIAKLPKV_					0	0	0			REV__ENSG00000169122|ENST00000519262|FAM110B	REV__ENSG00000169122|ENST00000519262|FAM110B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.548828125	3	352.547572	1054.62089	3.0399	0.0010717	0.33921	0.00011959	3.3791	0.0011913	352.5477214219877	18.695	0.16347	18.695	18.589	18.752	0					9	3	3	0	0	0	0.41335	1	5655	5655		50.034	5.0113	1	1471300	+		35211	16294	24244	24331	35648	35648					0.09576137019007547
SCPLIRLKDG	10	Unmodified	_SCPLIRLKDG_					0	0	0			REV__ENST00000493238.1_1_3:149677832-149678888:+|nuORF	REV__ENST00000493238.1_1_3:149677832-149678888:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.8756103515625	3	367.874348	1100.60121	3.1733	0.0011674	0.18831	6.9275E-05	3.3616	0.0012366	367.8744620401535	25.546	2.1118	25.546	25.431	27.543	0					61	40	3	0	0	0	0.60076	1	8971	8971		38.754	10.672	1	660600	+		35212	13323	24245	24332	35649	35649					0.05493761008256115
SCQKPIAGK	9	Unmodified	_SCQKPIAGK_					0	0	0		ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000530561.5_1_11:58294929-58321330:-|nuORF	ENSG00000110031|ENST00000395074|LPXN	ENSG00000110031|ENST00000395074|LPXN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2549133300781	2	466.25512	930.495686	0.66563	0.00031035	-1.5772	-0.00073536	-0.91154	-0.00042501	466.25439399628283	14.237	0.20951	14.237	14.167	14.376	0					6	4	2	0	0	0	0.3269	1	3656	3656		47.96	9.1534	1	194890			35213	2604	24246	24333	35650	35650					0.027658448826286985
SCSERPLTL	9	Unmodified	_SCSERPLTL_					0	0	0		nc|ENSG00000145819|Q9UNA1|ARHGAP26;ENST00000489924.1_1_5:142513552-142526947:+|nuORF;ENSG00000145819|ENST00000645722|ARHGAP26	nc|ENSG00000145819|Q9UNA1|ARHGAP26	nc|ENSG00000145819|Q9UNA1|ARHGAP26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2535095214844	2	503.255317	1004.49608	-0.063701	-3.2058E-05	-1.9695	-0.00099116	-2.0332	-0.0010232	503.2535968276504	32.378	0.37395	32.378	32.251	32.625	0					24	9	4	0	0	0	0.24095	1	11867	11867		56.721	3.7844	1	384300			35214	11569	24247	24334	35651	35651					-0.005987801881701671
SCSIKVLNLP	10	Unmodified	_SCSIKVLNLP_					0	0	0		ENST00000510531.5_1_5:6645338-6652038:+|nuORF	ENST00000510531.5_1_5:6645338-6652038:+|nuORF	ENST00000510531.5_1_5:6645338-6652038:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3052978515625	2	537.30481	1072.59507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.704	1	41.704	41.204	42.204	0								0	0	0	0.32041	1	16396	16396		47.657	1.6851	1				35215	10232	24248	24335	35652	35652					0.06167242776700732
SCSLRFKR	8	Unmodified	_SCSLRFKR_					0	0	0			REV__ENST00000542663.1_1_12:7303141-7303664:+|nuORF	REV__ENST00000542663.1_1_12:7303141-7303664:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7745361328125	2	498.774011	995.533469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.126	1	11.126	10.626	11.626	0								0	0	0	1.7419	1	2130	2130		4.6817	0	1		+		35216	15014	24249	24336	35653	35653					0.03552355868100676
SCTDKTIQVAD	11	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))TDKTIQVAD_	SC(1)TDKTIQVAD		SC(48)TDKTIQVAD		0	1	0			REV__ENST00000318266.9_1_20:2903898-2936286:+|nuORF	REV__ENST00000318266.9_1_20:2903898-2936286:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	619.2894287109375	2	619.290085	1236.56562	0.17496	0.00010835	-2.4405	-0.0015114	-2.2656	-0.001403	619.2887056356054	34.157	0.17096	34.157	34.049	34.22	0					15	7	3	0	0	0	0.44903	1	11157	11157		47.96	10.451	1	115250	+		35217	18314	24250	24337	35654	35654	646				-0.04320366030083278
SCTEKTKK	8	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))TEKTKK_	SC(1)TEKTKK		SC(59)TEKTKK		0	1	0			REV__ENSG00000274443|ENST00000624510|C8orf89	REV__ENSG00000274443|ENST00000624510|C8orf89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2532958984375	2	491.255317	980.49608	-2.7187	-0.0013356	-0.83948	-0.0004124	-3.5582	-0.001748	491.2548340068553	18.712	0.24602	18.712	18.638	18.884	0					17	6	4	0	0	0	0.51384	1	4924	4924		58.782	58.782	1	1541600	+		35218	17822	24251	24338	35655	35655	623				0.005052198118278284
SCWPQSAL	8	Unmodified	_SCWPQSAL_					0	0	0		ENST00000479519.5_1_3:13393312-13395748:-|nuORF	ENST00000479519.5_1_3:13393312-13395748:-|nuORF	ENST00000479519.5_1_3:13393312-13395748:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.204833984375	2	446.205096	890.395638	-2.7188	-0.0012131	2.4588	0.0010971	-0.26004	-0.00011603	446.20601843169186	28.028	0.16331	28.028	27.94	28.103	0					6	4	2	0	0	0	0.60719	1	9256	9256		47.916	1.1492	1	76767			35219	9941	24252	24339	35656	35656					-0.05394392451182739
SCWRKWKQLS	10	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))WRKWKQLS_	SC(1)WRKWKQLS		SC(44)WRKWKQLS		0	1	0		ENST00000545096.1_1_9:139981559-139982655:+|nuORF;MAN1B1|p.L339Sfs*2|3|0.33|ENSG00000177239|chr9:137101096-137101096|G/-|frameshift_variant;ENSG00000177239|ENST00000371589|MAN1B1	ENST00000545096.1_1_9:139981559-139982655:+|nuORF	ENST00000545096.1_1_9:139981559-139982655:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2411193847656	3	460.239801	1377.69757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.253	1	23.253	22.753	23.753	0								0	0	0	0.34574	1	6701	6701		43.651	17.587	1				35220	6654	24253	24340	35657	35657	283				0.023833285681803318
SCYSAGIAK	9	Unmodified	_SCYSAGIAK_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2188415527344	2	450.218203	898.421853	0.17124	7.7097E-05	0.74667	0.00033616	0.91791	0.00041326	450.21849905847904	23.212	0.14848	23.212	23.145	23.294	0					5	3	2	0	0	0	0.056004	1	7657	7657		93.143	47.191	1	38110			35221	2174	24254	24341	35658	35658					-0.031421232797015364
SDAAKFLI	8	Unmodified	_SDAAKFLI_					0	0	0			REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant	REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.7448425292969	2	432.744911	863.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.223	1	38.223	37.723	38.723	0								0	0	0	1.7419	1	14515	14515		45.952	3.4775	1		+		35222	13237	24255	24342	35659	35659					0.03806997494484676
SDACKIYKQ	9	Unmodified	_SDACKIYKQ_					0	0	0		ENST00000498735.1_1_1:70771606-70781164:-|nuORF;ENST00000490846.5_1_1:70758067-70779428:-|nuORF;nc|ENSG00000118454|Q8N6S4-2|ANKRD13C;ENSG00000118454|ENST00000370944|ANKRD13C	ENST00000498735.1_1_1:70771606-70781164:-|nuORF	ENST00000498735.1_1_1:70771606-70781164:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.263671875	2	528.263142	1054.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.285	1	19.285	18.785	19.785	0								0	0	0	0.31838	1	6069	6069		31.53	1.2121	1				35223	3074	24256	24343	35660	35660					-0.013344936711291666
SDADVGSKF	9	Unmodified	_SDADVGSKF_					0	0	0			REV__nc|ENSG00000100612|Q9Y394-2|DHRS7	REV__nc|ENSG00000100612|Q9Y394-2|DHRS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.21636962890625	2	463.216714	924.418876	-0.33922	-0.00015713	0.18997	8.7998E-05	-0.14925	-6.9134E-05	463.2167833617851	31.891	0.30981	31.891	31.778	32.088	0					20	9	3	0	0	0	0.37197	1	11007	11007		44.117	0	1	307420	+		35224	13565	24257	24344	35661	35661					-0.046356751328403334
SDAELVLGK	9	Unmodified	_SDAELVLGK_					0	0	0		tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2581787109375	2	466.258382	930.502212	-0.13504	-6.2964E-05	-1.0001	-0.00046632	-1.1352	-0.00052928	466.25810923880914	22.544	0.50703	22.544	22.22	22.728	0					27	10	4	0	0	0	0.22377	1	7578	7578		58.782	12.81	1	720390			35225	22757	24258	24345	35662	35662					0.03418061315016985
SDALGHHPL	9	Unmodified	_SDALGHHPL_					0	0	0			REV__TJP3|p.P829Afs*7|1|0.33|ENSG00000105289|chr19:3747948-3747949|-/G|frameshift_variant	REV__TJP3|p.P829Afs*7|1|0.33|ENSG00000105289|chr19:3747948-3747949|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7423400878906	2	473.740691	945.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.206	1	40.206	39.706	40.706	0								0	0	0	0.25856	1	15324	15324		42.474	8.9589	1		+		35226	13766	24259	24346	35663	35663					-0.008085564221460118
SDALKVTFL	9	Unmodified	_SDALKVTFL_					0	0	0		ENSG00000134590|ENST00000257013|RTL8C	ENSG00000134590|ENST00000257013|RTL8C	ENSG00000134590|ENST00000257013|RTL8C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2847900390625	2	497.2844	992.554247	-0.057498	-2.8593E-05	0.40309	0.00020045	0.34559	0.00017186	497.28486719081286	34.203	0.25407	34.203	34.108	34.362	0					22	11	3	0	0	0	0.4966	1	11159	11159		32.812	3.6629	1	166830			35227	3930	24260	24347	35664	35664					0.05767224728754172
SDAVIGKVI	9	Unmodified	_SDAVIGKVI_					0	0	0		nc|ENSG00000115977|Q2M2I8-2|AAK1	nc|ENSG00000115977|Q2M2I8-2|AAK1	nc|ENSG00000115977|Q2M2I8-2|AAK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2705993652344	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.855	1	38.855	38.355	39.355	0								0	0	0	0.35899	1	14774	14774		23.042	0	1				35228	11491	24261	24348	35665	35665					0.07378955557271638
SDCGPRVLI	9	Carbamidomethyl (C)	_SDC(Carbamidomethyl (C))GPRVLI_	SDC(1)GPRVLI		SDC(46)GPRVLI		0	1	0		nc|ENSG00000073146|Q9BXT6-5|MOV10L1;nc|ENSG00000073146|Q9BXT6-4|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7618103027344	2	508.763309	1015.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.345	1	23.345	22.845	23.845	0								0	0	0	0.23445	1	7716	7716		45.972	8.8131	1				35229	1510	24262	24349	35666	35666	60				0.004929260487415377
SDCKMSVADL	10	Unmodified	_SDCKMSVADL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.73876953125	2	534.738642	1067.46273	1.7868	0.00095545	-1.3081	-0.00069949	0.47868	0.00025597	534.7378615211346	15.241	0.10945	15.241	15.18	15.289	0					6	2	3	0	0	0	0.50287	1	4139	4139		45.022	3.5956	1	168550	+		35230	14494;21013	24263	24350	35667	35667					-0.06830150022369708
SDEDRKTVK	9	Unmodified	_SDEDRKTVK_					0	0	0			REV__nc|ENSG00000135870|Q5TC82-2|RC3H1;REV__ENSG00000056586|ENST00000357244|RC3H2	REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2830810546875	2	539.280377	1076.5462	3.4252	0.0018472	2.0222	0.0010905	5.4474	0.0029377	539.2817134175342	11.381	0.093741	11.381	11.297	11.391	0					9	5	3	0	0	0	0.22837	1	2201	2201		42.396	0	1	95749	+		35231	14828;13062	24264	24351	35668	35668					0.010990457413299737
SDERLHIS	8	Unmodified	_SDERLHIS_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7451477050781	2	478.743431	955.472308	2.2604	0.0010821	1.7742	0.00084938	4.0345	0.0019315	478.7442750930943	42.167	0.16921	42.167	42.088	42.257	0					6	4	2	0	0	0	0.73426	1	16844	16844		29.15	29.15	1	93938	+		35232	14673	24265	24352	35669	35669					-0.007208776303286868
SDFAITRF	8	Unmodified	_SDFAITRF_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.74664306640625	2	478.745442	955.476331	0.87674	0.00041974	1.1136	0.00053312	1.9903	0.00095285	478.7459578707348	42.21	0.25204	42.21	42.095	42.347	0					10	6	2	0	0	0	0.58686	1	16810	16810		51.193	10.62	1	178520			35233	3069	24266	24353	35670	35670					-0.003187881366329748
SDFKLGSLT	9	Unmodified	_SDFKLGSLT_					0	0	0			REV__FSD1L|p.Y262F|1|0.33|ENSG00000106701|chr9:105506597-105506597|A/T|missense_variant	REV__FSD1L|p.Y262F|1|0.33|ENSG00000106701|chr9:105506597-105506597|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2582702636719	2	484.258382	966.502212	0.62395	0.00030215	-0.78051	-0.00037797	-0.15657	-7.5819E-05	484.25813733529606	27.781	0.23074	27.781	27.665	27.895	0					9	5	2	0	0	0	0.22377	1	9745	9745		58.782	3.2778	1	235640	+		35234	13835	24267	24354	35671	35671					0.017620613149915698
SDFKQVLL	8	Unmodified	_SDFKQVLL_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2710876464844	2	475.271293	948.528032	-0.43699	-0.00020769	-0.35123	-0.00016693	-0.78822	-0.00037462	475.27117093888813	41.191	0.25743	41.191	41.07	41.327	0					22	12	2	0	0	0	0.5676	1	15669	15669		53.351	0	1	150740			35235	5844	24268	24355	35672	35672					0.051709555572983845
SDFLQKQE	8	Unmodified	_SDFLQKQE_					0	0	0		ENST00000462785.1_1_2:112526870-112536431:-|nuORF	ENST00000462785.1_1_2:112526870-112536431:-|nuORF	ENST00000462785.1_1_2:112526870-112536431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7457275390625	2	497.745639	993.476725	0.70047	0.00034866	-0.67841	-0.00033768	0.022062	1.0981E-05	497.74520748745306	25.539	0.47079	25.539	25.415	25.886	0					24	9	3	0	0	0	0.51384	1	8775	8775		58.782	3.2778	1	391820			35236	9748	24269	24356	35673	35673					-0.02027413207429163
SDGAGGSH	8	Unmodified	_SDGAGGSH_					0	0	0			REV__ENSG00000089169|ENST00000389385|RPH3A	REV__ENSG00000089169|ENST00000389385|RPH3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.1401672363281	2	344.138267	686.261981	3.0305	0.0010429	-2.549	-0.00087722	0.48143	0.00016568	344.1392287523661	43.953	0.43189	43.953	43.689	44.121	0					36	15	5	0	0	0	0.8006	1	17615	17615		20.482	0	1	224550	+		35237	13406	24270	24357	35674	35674					-0.09369915232514359
SDGGGGGH	8	Unmodified	_SDGGGGGH_					0	0	0			REV__KCNC3|p.V354Cfs*74|1|0.26|ENSG00000131398|chr19:50323893-50323893|C/-|frameshift_variant	REV__KCNC3|p.V354Cfs*74|1|0.26|ENSG00000131398|chr19:50323893-50323893|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.6263122558594	2	322.12516	642.235767	1.5188	0.00048924	0.79524	0.00025617	2.314	0.00074541	322.12667594267407	42.323	0.41204	42.323	42.074	42.486	0					53	20	3	0	0	0	0.8006	1	16599	16599		20.482	8.9708	1	349980	+		35238	14622	24271	24358	35675	35675					-0.09966184403992884
SDGGGPGAGG	10	Unmodified	_SDGGGPGAGG_					0	0	0			REV__ENST00000392533.7_1_12:118704555-118810629:-|nuORF	REV__ENST00000392533.7_1_12:118704555-118810629:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.6529541015625	2	366.151375	730.288196	3.1608	0.0011573	-1.6272	-0.00059579	1.5337	0.00056155	366.15232498188897	45.484	0.25909	45.484	45.387	45.646	0					22	9	3	0	0	0	0.63073	1	18219	18219		30.504	5.0535	1	162780	+		35239	18829	24272	24359	35676	35676					-0.08773646061024465
SDGKIALPEK	10	Unmodified	_SDGKIALPEK_					0	0	0		nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54;nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-4|VPS54	nc|ENSG00000143952|Q9P1Q0-4|VPS54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2984008789062	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.068	1	38.068	37.568	38.568	0								0	0	0	0.3598	1	14919	14919		41.427	4.2675	1				35240	4591	24273	24360	35677	35677					0.0554970826913177
SDGKKFSN	8	Unmodified	_SDGKKFSN_					0	0	0			REV__ENSG00000097046|ENST00000234626|CDC7	REV__ENSG00000097046|ENST00000234626|CDC7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.71893310546875	2	441.719424	881.424296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.642	1	21.642	21.142	22.142	0								0	0	0	1.7419	1	5992	5992		25.45	2.4077	1		+		35241	13484	24274	24361	35678	35678					-0.02115951550376849
SDGLAKNLNK	10	Unmodified	_SDGLAKNLNK_					0	0	0		ARHGAP29|p.G358D|1|0.14|ENSG00000137962|chr1:94202614-94202614|C/T|missense_variant	ARHGAP29|p.G358D|1|0.14|ENSG00000137962|chr1:94202614-94202614|C/T|missense_variant	ARHGAP29|p.G358D|1|0.14|ENSG00000137962|chr1:94202614-94202614|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.5486755371094	3	353.864617	1058.57202	-0.052419	-1.8549E-05	0.5934	0.00020998	0.54098	0.00019143	353.86476846490507	16.01	0.11571	16.01	15.947	16.063	0					6	2	3	0	0	0	0.56931	1	4355	4355		28.577	0	1	103630			35242	205	24275	24362	35679	35679					0.04507939983614051
SDHGAIQLK	9	Unmodified	_SDHGAIQLK_					0	0	0		ENST00000470510.5_1_1:245912867-246021878:-|nuORF	ENST00000470510.5_1_1:245912867-246021878:-|nuORF	ENST00000470510.5_1_1:245912867-246021878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7613220214844	2	484.761623	967.508694	-0.093771	-4.5456E-05	-0.22693	-0.00011001	-0.3207	-0.00015546	484.7614001641074	23.12	0.11782	23.12	23.061	23.179	0					4	2	2	0	0	0	0.51817	1	7933	7933		30.504	0	1	106990			35243	9842	24276	24363	35680	35680					0.02363999266378869
SDHVDPLLY	9	Unmodified	_SDHVDPLLY_					0	0	0			REV__ENSG00000228594|ENST00000422725|FNDC10	REV__ENSG00000228594|ENST00000422725|FNDC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2590942382812	2	529.761289	1057.50803	-1.189	-0.00062991	-2.7335	-0.0014481	-3.9225	-0.002078	529.7599998286665	35.413	0.2827	35.413	35.241	35.524	0					16	10	2	0	0	0	0.35045	1	12592	12592		45.952	3.4775	1	122030	+		35244	17637	24277	24364	35681	35681					-0.01842840173321747
SDHYAVINA	9	Unmodified	_SDHYAVINA_					0	0	0			REV__ENST00000592841.5_1_19:34919394-34922879:+|nuORF	REV__ENST00000592841.5_1_19:34919394-34922879:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.23822021484375	2	495.237981	988.461409	0.69755	0.00034545	-0.82862	-0.00041036	-0.13107	-6.4911E-05	495.237596147776	30	0.20762	30	29.9	30.107	0					7	4	2	0	0	0	0.37197	1	11181	11181		44.117	6.9577	1	586250	+		35245	14464	24278	24365	35682	35682					-0.03328280004620865
SDIAQNQE	8	Unmodified	_SDIAQNQE_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.70416259765625	2	452.703971	903.393389	0.68201	0.00030875	-1.1115	-0.00050319	-0.42952	-0.00019445	452.7037952744072	15.244	0.26115	15.244	15.201	15.462	0					14	6	4	0	0	0	0.51384	1	3904	3904		58.782	2.0609	1	1625600			35246	11821	24279	24366	35683	35683					-0.06217149655276444
SDIKGSVL	8	Unmodified	_SDIKGSVL_					0	0	0		ENST00000515119.5_1_4:3517776-3534065:-|nuORF;ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.7344055175781	2	409.734543	817.454533	0.053743	2.202E-05	-0.20183	-8.2697E-05	-0.14809	-6.0676E-05	409.7344291288879	28.491	0.36372	28.491	28.331	28.695	0					14	7	3	0	0	0	0.29212	1	10429	10429		85.161	5.4482	1	756260			35247	5633	24280	24367	35684	35684					0.03850407114828158
SDIKGSVL	8	Unmodified	_SDIKGSVL_					0	0	0		ENST00000515119.5_1_4:3517776-3534065:-|nuORF;ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.73468017578125	2	409.734543	817.454533	0.1207	4.9455E-05	0.17591	7.2077E-05	0.29661	0.00012153	409.73468313601586	28.262	0.19344	28.262	28.159	28.353	0					7	4	2	0	0	0	0.29286	1	9348	9348		84.916	8.1414	1	112180			35248	5633	24280	24367	35685	35685					0.03850407114828158
SDIKSVGL	8	Unmodified	_SDIKSVGL_					0	0	0			REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF	REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.734375	2	409.734543	817.454533	0.63694	0.00026097	-0.74175	-0.00030392	-0.10482	-4.2948E-05	409.73420532646264	28.191	0.16348	28.191	28.119	28.282	0					9	5	2	0	0	0	0.29286	1	8773	8773		84.916	8.1414	1	161570	+		35249	20228	24281	24368	35686	35686					0.03850407114828158
SDILIHGM	8	Unmodified	_SDILIHGM_					0	0	0		nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L;ENST00000524795.5_1_15:66587446-66615029:+|nuORF;DIS3L|p.L414*|1|0.42|ENSG00000166938|chr15:66320644-66320644|T/-|frameshift_variant;ENST00000565281.5_1_15:66585934-66615040:+|nuORF;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF	nc|ENSG00000166938|Q8TF46-2|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.228271484375	2	443.228571	884.442588	0.5808	0.00025743	-1.1962	-0.0005302	-0.61541	-0.00027277	443.22804516871435	38.393	0.16181	38.393	38.312	38.474	0					9	5	2	0	0	0	0.24228	1	14580	14580		114.6	40.08	1	166490			35250	5952	24282	24369	35687	35687					-0.004255329000216079
SDILIHGM	8	Unmodified	_SDILIHGM_					0	0	0		nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L;ENST00000524795.5_1_15:66587446-66615029:+|nuORF;DIS3L|p.L414*|1|0.42|ENSG00000166938|chr15:66320644-66320644|T/-|frameshift_variant;ENST00000565281.5_1_15:66585934-66615040:+|nuORF;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF	nc|ENSG00000166938|Q8TF46-2|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2279052734375	2	443.228571	884.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.14	1	38.14	37.64	38.64	0								0	0	0	1.7419	1	12868	12868		44.531	7.372	1				35251	5952	24282	24369	35688	35688					-0.004255329000216079
SDILIHGM	8	Unmodified	_SDILIHGM_					0	0	0		nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L;ENST00000524795.5_1_15:66587446-66615029:+|nuORF;DIS3L|p.L414*|1|0.42|ENSG00000166938|chr15:66320644-66320644|T/-|frameshift_variant;ENST00000565281.5_1_15:66585934-66615040:+|nuORF;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF	nc|ENSG00000166938|Q8TF46-2|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.22796630859375	2	443.228571	884.442588	0.51637	0.00022887	-1.4443	-0.00064015	-0.92792	-0.00041128	443.2279163042727	38.363	0.26202	38.363	38.248	38.51	0					13	9	2	0	0	0	0.29779	1	15031	15031		83.287	22.884	1	239650			35252	5952	24282	24369	35689	35689					-0.004255329000216079
SDILVFDY	8	Unmodified	_SDILVFDY_					0	0	0		ENST00000502424.1_1_5:14797477-14798464:-|nuORF	ENST00000502424.1_1_5:14797477-14798464:-|nuORF	ENST00000502424.1_1_5:14797477-14798464:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2403564453125	2	486.239658	970.464763	0.36878	0.00017932	0.60654	0.00029493	0.97533	0.00047424	486.24005436829526	15.592	0.30472	15.592	15.38	15.685	0					16	7	3	0	0	0	0.4723	1	4012	4012		62.978	0	1	392160			35253	10153	24283	24370	35690	35690					-0.021650299506177362
SDIQVKEL	8	Unmodified	_SDIQVKEL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2582092285156	2	466.258382	930.502212	-0.43793	-0.00020419	-0.0010395	-4.8469E-07	-0.43897	-0.00020467	466.25822516021515	31.396	0.19803	31.396	31.291	31.489	0					19	8	3	0	0	0	0.4001	1	10074	10074		70.816	10.698	1	503180			35254	3051	24284	24371	35691	35691					0.03418061315016985
SDIQVKEL	8	Unmodified	_SDIQVKEL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.258056640625	2	466.258382	930.502212	-0.66892	-0.00031189	0.057936	2.7013E-05	-0.61098	-0.00028488	466.25833841055083	31.649	0.34205	31.649	31.518	31.86	0					22	8	4	0	0	0	0.24383	1	11530	11530		112.41	22.041	1	2083300			35255	3051	24284	24371	35692	35692					0.03418061315016985
SDIQVKEL	8	Unmodified	_SDIQVKEL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2582092285156	2	466.258382	930.502212	-0.91653	-0.00042734	0.29337	0.00013679	-0.62316	-0.00029055	466.25845391798407	31.429	0.24364	31.429	31.347	31.591	0					25	9	4	0	0	0	0.24383	1	10406	10406		112.41	27.495	1	646670			35256	3051	24284	24371	35693	35693					0.03418061315016985
SDIQVKEL	8	Unmodified	_SDIQVKEL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.25762939453125	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.424	1	31.424	30.924	31.924	0								0	0	0	1.7419	1	10818	10818		80.455	16.247	1				35257	3051	24284	24371	35694	35694					0.03418061315016985
SDITIMFEETQ	11	Unmodified	_SDITIMFEETQ_					0	0	0		ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2528991699219	3	438.535838	1312.58568	0.66142	0.00029006	-0.36488	-0.00016001	0.29654	0.00013004	438.5358031800884	25.937	1.385	25.937	25.687	27.072	0					67	26	4	0	0	0	0.78104	1	9162	9162		12.433	12.433	1	996310			35258	3614	24285	24372	35695	35695					-0.05810615090126703
SDKATKLVL	9	Unmodified	_SDKATKLVL_					0	0	0			REV__nc|ENSG00000205464|Q52LC2|ATP6AP1L	REV__nc|ENSG00000205464|Q52LC2|ATP6AP1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.5340576171875	3	325.534209	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.458	1	18.458	17.958	18.958	0								0	0	0	0.32356	1	4594	4594		30.318	10.321	1		+		35259	21195	24286	24373	35696	35696					0.0929491362007866
SDKIGDKGL	9	Unmodified	_SDKIGDKGL_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7554931640625	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.618	1	38.618	38.118	39.118	0								0	0	0	0.24724	1	13019	13019		44.117	1.7207	1				35260	3061	24287	24374	35697	35697					0.028971771722467565
SDKLRFPG	8	Unmodified	_SDKLRFPG_					0	0	0			REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2560119628906	2	460.253434	918.492316	0.086854	3.9975E-05	-0.61024	-0.00028086	-0.52338	-0.00024089	460.25318409245494	27.445	0.56559	27.445	27.325	27.891	0					49	18	4	0	0	0	0.76283	1	8574	8574		25.45	0	1	1685600	+		35261	20263	24288	24375	35698	35698					0.029809181002860896
SDKLYKLS	8	Unmodified	_SDKLYKLS_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2685852050781	2	477.26875	952.522947	-0.63929	-0.00030511	0.17306	8.2598E-05	-0.46622	-0.00022251	477.2687875502379	31.578	0.36374	31.578	31.471	31.835	0					16	7	3	0	0	0	0.42778	1	11808	11808		67.494	3.9598	1	1529300			35262	6942	24289	24376	35699	35699					0.04478651694671498
SDKMGLEK	8	Unmodified	_SDKMGLEK_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.23095703125	2	454.23131	906.448068	-0.55777	-0.00025336	0.94293	0.00042831	0.38516	0.00017495	454.2317779693239	27.291	0.30443	27.291	27.196	27.501	0					12	7	2	0	0	0	0.22389	1	9503	9503		127.46	10.558	1	564760	+		35263	16316	24290	24377	35700	35700					-0.008898541081975964
SDKMGLEK	8	Unmodified	_SDKMGLEK_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2308654785156	2	454.23131	906.448068	0.72117	0.00032758	-0.4514	-0.00020504	0.26977	0.00012254	454.231224989364	27.262	0.32027	27.262	27.152	27.473	0					15	6	3	0	0	0	0.241	1	9870	9870		115.49	2.0825	1	518670	+		35264	16316	24290	24377	35701	35701					-0.008898541081975964
SDKMGLEK	8	Unmodified	_SDKMGLEK_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2320251464844	2	454.23131	906.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.081	1	27.081	26.581	27.581	0								0	0	0	1.7419	1	8813	8813		87.696	13.18	1		+		35265	16316	24290	24377	35702	35702					-0.008898541081975964
SDKSSFDK	8	Unmodified	_SDKSSFDK_					0	0	0			REV__UNC79|p.E1772Rfs*6|1|0.14|ENSG00000133958|chr14:93622543-93622543|G/-|frameshift_variant	REV__UNC79|p.E1772Rfs*6|1|0.14|ENSG00000133958|chr14:93622543-93622543|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2163391113281	2	457.216714	912.418876	-0.14922	-6.8224E-05	-0.97065	-0.0004438	-1.1199	-0.00051202	457.2161937368453	19.987	0.27024	19.987	19.826	20.096	0					11	5	3	0	0	0	0.32815	1	6396	6396		79.451	11.957	1	389540	+		35266	14724	24291	24378	35703	35703					-0.0408367513284702
SDLEKNLRSY	10	Unmodified	_SDLEKNLRSY_					0	0	0			REV__CEP162|p.I224Nfs*16|1|0.5|ENSG00000135315|chr6:84203997-84203998|-/T|frameshift_variant	REV__CEP162|p.I224Nfs*16|1|0.5|ENSG00000135315|chr6:84203997-84203998|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	408.87774658203125	3	408.878815	1223.61462	-1.4092	-0.0005762	-1.0486	-0.00042876	-2.4578	-0.001005	408.8783973558394	27.936	0.59061	27.936	27.762	28.353	0					43	21	3	0	0	0	0.72769	1	8938	8938		17.468	1.4612	1	211480	+		35267	12426	24292	24379	35704	35704					0.011752903212027377
SDLGQNRNLS	10	Unmodified	_SDLGQNRNLS_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.276123046875	2	552.275626	1102.5367	0.090192	4.9811E-05	-3.4769	-0.0019202	-3.3867	-0.0018704	552.273966547871	19.967	0.21973	19.967	19.843	20.062	0					10	4	3	0	0	0	0.38194	1	6379	6379		58.23	1.5089	1	303180	+		35268	14853	24293	24380	35705	35705					-0.010467225441971095
SDLHPIKVV	9	Unmodified	_SDLHPIKVV_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.26	1	32.26	31.76	32.76	0								0	0	0	0.37146	1	10754	10754		19.997	6.5427	1				35269	6845	24294	24381	35706	35706					0.07810333339944009
SDLKVILM	8	Unmodified	_SDLKVILM_					0	0	0		DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7696533203125	2	459.770071	917.52559	0.81416	0.00037433	-0.29097	-0.00013378	0.52319	0.00024055	459.7699572546497	45.086	0.17245	45.086	45.004	45.177	0					17	10	2	0	0	0	0.64144	1	16811	16811		42.396	8.2236	1	91121			35270	784	24295	24382	35707	35707					0.06352783827981057
SDLKVILM	8	Unmodified	_SDLKVILM_					0	0	0		DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7701110839844	2	459.770071	917.52559	-0.44891	-0.00020639	0.85491	0.00039306	0.406	0.00018667	459.77046069745063	44.989	0.17933	44.989	44.921	45.1	0					12	7	2	0	0	0	0.49216	1	18013	18013		60.972	10.947	1	108400			35271	784	24295	24382	35708	35708					0.06352783827981057
SDLKVILM	8	Unmodified	_SDLKVILM_					0	0	0		DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7703552246094	2	459.770071	917.52559	0.88072	0.00040493	-1.0925	-0.00050229	-0.21176	-9.7361E-05	459.76957758503625	45.017	0.17731	45.017	44.915	45.092	0					14	7	3	0	0	0	0.58597	1	18020	18020		51.335	14.176	1	126740			35272	784	24295	24382	35709	35709					0.06352783827981057
SDLKVIVM	8	Oxidation (M)	_SDLKVIVM(Oxidation (M))_		SDLKVIVM(1)		SDLKVIVM(82)	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7604064941406	2	460.759704	919.504854	0.092087	4.243E-05	-0.0014065	-6.4808E-07	0.09068	4.1782E-05	460.75977149005405	31.989	0.2546	31.989	31.876	32.13	0					15	10	2	0	0	0	0.30437	1	10297	10297		82.305	24.494	1	85800			35273	2580	24296	24383	35710	35710		112			0.04188193448317179
SDLKVIVM	8	Oxidation (M)	_SDLKVIVM(Oxidation (M))_		SDLKVIVM(1)		SDLKVIVM(88)	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7595520019531	2	460.759704	919.504854	-0.15171	-6.99E-05	0.13818	6.3667E-05	-0.013527	-6.2327E-06	460.7598203416183	32.2	0.33706	32.2	32.095	32.432	0					17	7	3	0	0	0	0.28427	1	12201	12201		87.754	16.376	1	380860			35274	2580	24296	24383	35711	35711		112			0.04188193448317179
SDLKVIVM	8	Oxidation (M)	_SDLKVIVM(Oxidation (M))_		SDLKVIVM(1)		SDLKVIVM(53)	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7591857910156	2	460.759704	919.504854	-0.11296	-5.2049E-05	-0.089611	-4.1289E-05	-0.20257	-9.3338E-05	460.7597557837295	32.033	0.20336	32.033	31.897	32.101	0					8	5	2	0	0	0	0.5676	1	11078	11078		53.351	10.877	1	52637			35275	2580	24296	24383	35712	35712		112			0.04188193448317179
SDLKVIVM	8	Oxidation (M)	_SDLKVIVM(Oxidation (M))_		SDLKVIVM(1)		SDLKVIVM(99)	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7596130371094	2	460.759704	919.504854	-0.45677	-0.00021046	-0.14298	-6.5879E-05	-0.59974	-0.00027634	460.75975032581306	32.227	0.62482	32.227	32.068	32.693	0					23	12	3	0	0	0	0.25102	1	12115	12115		99.375	27.997	1	627720			35276	2580	24296	24383	35713	35713		112			0.04188193448317179
SDLKVIVM	8	Unmodified	_SDLKVIVM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.761962890625	2	452.762246	903.50994	-0.01433	-6.4881E-06	-0.35922	-0.00016264	-0.37355	-0.00016913	452.76213417005954	40.265	0.38236	40.265	40.175	40.557	0					50	23	3	0	0	0	0.37144	1	13013	13013		74.255	24.231	1	757030			35277	2580	24296	24384	35714	35714					0.0543249731092601
SDLKVIVM	8	Unmodified	_SDLKVIVM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7619934082031	2	452.762246	903.50994	-0.11859	-5.3691E-05	-0.65072	-0.00029462	-0.76931	-0.00034831	452.762106779517	40.571	0.41887	40.571	40.447	40.866	0					44	15	4	0	0	0	0.24806	1	15968	15968		104.75	33.369	1	1991500			35278	2580	24296	24384	35715	35715					0.0543249731092601
SDLKVIVM	8	Unmodified	_SDLKVIVM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.263671875	2	452.762246	903.50994	0.72082	0.00032636	-1.0295	-0.00046611	-0.30866	-0.00013975	452.7618294017153	40.573	0.15508	40.573	40.495	40.65	0					9	6	2	0	0	0	0.65148	1	15985	15985		40.778	8.8233	1	61321			35279	2580	24296	24384	35716	35716					0.0543249731092601
SDLKVIVM	8	Unmodified	_SDLKVIVM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7613525390625	2	452.762246	903.50994	0.33504	0.00015169	-1.1042	-0.00049996	-0.76919	-0.00034826	452.76188748000857	40.359	0.273	40.359	40.262	40.535	0					40	15	4	0	0	0	0.49216	1	14327	14327		60.972	10.947	1	681920			35280	2580	24296	24384	35717	35717					0.0543249731092601
SDLKVIVM	8	Unmodified	_SDLKVIVM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7618408203125	2	452.762246	903.50994	-0.031943	-1.4463E-05	-0.65749	-0.00029769	-0.68943	-0.00031215	452.7620531248658	40.353	0.34304	40.353	40.256	40.599	0					33	19	3	0	0	0	0.35045	1	14331	14331		76.774	26.75	1	471440			35281	2580	24296	24384	35718	35718					0.0543249731092601
SDLKVIVM	8	Unmodified	_SDLKVIVM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7619934082031	2	452.762246	903.50994	-0.41368	-0.0001873	-0.40843	-0.00018492	-0.82211	-0.00037222	452.76215031190316	40.512	0.64337	40.512	40.359	41.002	0					32	12	5	0	0	0	0.22071	1	16076	16076		129.68	46.395	1	5662200			35282	2580	24296	24384	35719	35719					0.0543249731092601
SDLLIGSTSL	10	Unmodified	_SDLLIGSTSL_					0	0	0			REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant	REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2710266113281	2	503.276772	1004.53899	-2.0488	-0.0010311	-4.1759	-0.0021016	-6.2247	-0.0031327	503.27457693215047	36.257	0.50356	36.257	36.093	36.597	0					37	21	2	0	0	0	0.32758	1	13069	13069		64.207	18.235	1	1174900	+		35283	12697	24297	24385	35720	35720					0.03690313140930357
SDLPVKVI	8	Unmodified	_SDLPVKVI_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.7684631347656	2	435.768386	869.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.778	1	38.778	38.278	39.278	0								0	0	0	1.7419	1	14742	14742		55.504	5.4797	1				35284	3515	24298	24386	35721	35721					0.08223857045629757
SDLPVNYVE	9	Unmodified	_SDLPVNYVE_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2529296875	2	518.253297	1034.49204	0.94209	0.00048824	-0.87141	-0.00045161	0.070684	3.6632E-05	518.2526375225696	28.099	0.20702	28.099	27.952	28.159	0					7	5	2	0	0	0	0.42902	1	9280	9280		39.253	3.6345	1	43430	+		35285	13612	24299	24387	35722	35722					-0.023825464102401384
SDLQPYTEY	9	Unmodified	_SDLQPYTEY_					0	0	0		USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.2493286132812	2	558.248212	1114.48187	0.53344	0.00029779	1.1447	0.00063903	1.6781	0.00093682	558.2487174118132	33.617	1.2882	33.617	33.443	34.731	0					65	33	4	0	0	0	0.46194	1	12415	12415		36.447	0.82846	1	4006500			35286	1203	24300	24388	35723	35723					-0.07079154135476529
SDLRILKY	8	Unmodified	_SDLRILKY_					0	0	0			REV__VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	REV__VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.533935546875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.972	1	24.972	24.472	25.472	0								0	0	0	1.7419	1	7709	7709		47.916	18.766	1		+		35287	14535	24301	24389	35724	35724					0.07810333339955378
SDLRWSKQT	9	Unmodified	_SDLRWSKQT_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.7909545898438	2	560.790912	1119.56727	1.4348	0.00080462	-0.69054	-0.00038725	0.74426	0.00041737	560.7905175191054	28.156	0.38596	28.156	28.065	28.451	0					25	12	3	0	0	0	0.25761	1	8755	8755		47.657	17.34	1	732200			35288	6476	24302	24390	35725	35725					0.012270558408772558
SDLSHMGLSL	10	Unmodified	_SDLSHMGLSL_					0	0	0		ENST00000526084.1_1_11:7690232-7690520:-|nuORF	ENST00000526084.1_1_11:7690232-7690520:-|nuORF	ENST00000526084.1_1_11:7690232-7690520:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2620239257812	2	530.260599	1058.50665	1.2037	0.00063826	0.93844	0.00049762	2.1421	0.0011359	530.2611540061126	39.746	1.1244	39.746	39.197	40.322	0					87	59	3	0	0	0	0.61187	1	14197	14197		32.812	3.6424	1	107890			35289	10369	24303	24391	35726	35726					-0.020267975337219468
SDLSKGVL	8	Unmodified	_SDLSKGVL_					0	0	0		nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.7343444824219	2	409.734543	817.454533	-0.50077	-0.00020518	0.31244	0.00012802	-0.18833	-7.7166E-05	409.7346380393315	28.418	0.31383	28.418	28.311	28.624	0					18	6	4	0	0	0	0.22624	1	10279	10279		125.81	21.067	1	1433000			35290	6119	24304	24392	35727	35727					0.03850407114828158
SDLTGSFRLY	10	Unmodified	_SDLTGSFRLY_					0	0	0		ENSG00000000419|ENST00000371588|DPM1;ENST00000466152.5_1_20:49551671-49557490:-|nuORF	ENSG00000000419|ENST00000371588|DPM1	ENSG00000000419|ENST00000371588|DPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.7933959960938	2	579.793121	1157.57169	-0.042398	-2.4582E-05	0.79633	0.0004617	0.75393	0.00043712	579.7935837623397	36.838	0.59342	36.838	36.625	37.219	0					22	16	2	0	0	0	0.54197	1	13890	13890		40.778	0.20554	1	116160			35291	920	24305	24393	35728	35728					-0.0007947973622322024
SDNIFKLRIF	10	Unmodified	_SDNIFKLRIF_					0	0	0			REV__ENST00000366644.3_1_1:231475179-231480431:+|nuORF	REV__ENST00000366644.3_1_1:231475179-231480431:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.239501953125	3	418.239796	1251.69756	1.0549	0.00044121	-1.2806	-0.0005356	-0.22568	-9.439E-05	418.23918202713315	39.248	0.1908	39.248	39.11	39.301	0					8	4	3	0	0	0	0.64162	1	15488	15488		29.17	1.0886	1	107040	+		35292	18584	24306	24394	35729	35729					0.08177651839832834
SDPGHAPA	8	Unmodified	_SDPGHAPA_					0	0	0		ENST00000602321.5_1_16:67682040-67682571:+|nuORF	ENST00000602321.5_1_16:67682040-67682571:+|nuORF	ENST00000602321.5_1_16:67682040-67682571:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.1720886230469	2	376.17211	750.329667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.773	1	15.773	15.273	16.273	0								0	0	0	1.7419	1	4380	4380		14.664	0.88877	1				35293	11043	24307	24395	35730	35730					-0.05548465301717442
SDPPVPAQL	9	Unmodified	_SDPPVPAQL_					0	0	0			REV__nc|ENSG00000163346|Q96AQ6-3|PBXIP1	REV__nc|ENSG00000163346|Q96AQ6-3|PBXIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2452392578125	2	462.245275	922.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.121	1	32.121	31.621	32.621	0								0	0	0	0.14517	1	10366	10366		60.972	7.6205	1		+		35294	15872	24308	24396	35731	35731					0.011657921435130447
SDQFPLPLK	9	Unmodified	_SDQFPLPLK_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;TNPO1|p.R891C|2|0.35|ENSG00000083312|chr5:72905384-72905384|C/T|missense_variant	nc|ENSG00000083312|Q92973-2|TNPO1	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7898559570312	2	522.78985	1043.56515	1.6248	0.00084943	-1.4992	-0.00078379	0.12556	6.5641E-05	522.7890679797323	41.76	0.59945	41.76	41.477	42.076	0					31	16	2	0	0	0	0.38666	1	16647	16647		42.864	2.0861	1	108150			35295	1694	24309	24397	35732	35732					0.04510627103036313
SDQKESKQKL	10	Unmodified	_SDQKESKQKL_					0	0	0			REV__nc|ENSG00000181026|Q8WTP8-2|AEN	REV__nc|ENSG00000181026|Q8WTP8-2|AEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.8228759765625	2	595.822409	1189.63027	1.7249	0.0010277	-1.1603	-0.00069133	0.56461	0.0003364	595.8218578296047	28.346	0.31653	28.346	28.194	28.511	0					17	6	4	0	0	0	0.31894	1	10276	10276		44.377	0	1	756760	+		35296	21147	24310	24398	35733	35733					0.04303576838242407
SDQSFSSLE	9	Unmodified	_SDQSFSSLE_					0	0	0		ENSG00000164675|ENST00000324698|IQUB;IQUB|p.I180Ffs*8|1|0.51|ENSG00000164675|chr7:123503358-123503358|T/-|frameshift_variant;ENST00000483567.1_1_7:123143235-123152394:-|nuORF;nc|ENSG00000164675|Q8NA54-2|IQUB	ENSG00000164675|ENST00000324698|IQUB	ENSG00000164675|ENST00000324698|IQUB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.21563720703125	2	500.216911	998.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.302	1	18.302	17.802	18.802	0								0	0	0	0.2591	1	4757	4757		42.396	3.59	1				35297	5716	24311	24399	35734	35734					-0.08000300203639199
SDRPCLVVL	9	Unmodified	_SDRPCLVVL_					0	0	0		SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.H875Tfs*13|1|0.16|ENSG00000198198|chr1:43425177-43425178|-/C|frameshift_variant;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.A1115Lfs*4|1|0.26|ENSG00000198198|chr1:43427358-43427358|G/-|frameshift_variant;SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.27423095703125	2	501.276052	1000.53755	-2.1072	-0.0010563	-2.6789	-0.0013429	-4.7861	-0.0023991	501.2741406334372	32.755	0.35629	32.755	32.494	32.85	0					18	10	3	0	0	0	0.20551	1	11412	11412		60.972	11.53	1	236420			35298	7539	24312	24400	35735	35735					0.03730400571157588
SDRPQVQP	8	Unmodified	_SDRPQVQP_					0	0	0			REV__ENST00000339431.8_1_7:102553532-102574274:+|nuORF	REV__ENST00000339431.8_1_7:102553532-102574274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7379150390625	2	463.738148	925.461744	-0.442	-0.00020497	0.14583	6.7625E-05	-0.29618	-0.00013735	463.73812695715463	25.906	0.3274	25.906	25.734	26.061	0					13	7	3	0	0	0	0.65276	1	7813	7813		40.573	4.9543	1	192260	+		35299	18440	24313	24401	35736	35736					-0.0039686028476353385
SDRPSTEE	8	Unmodified	_SDRPSTEE_					0	0	0			REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000116396|Q03721-2|KCNC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.70184326171875	2	460.701429	919.388304	-0.15202	-7.0036E-05	1.092	0.00050309	0.93998	0.00043305	460.70194253257284	11.946	0.080876	11.946	11.868	11.949	0					4	2	2	0	0	0	0.69548	1	2563	2563		34.173	7.3764	1	57514	+		35300	14143	24314	24402	35737	35737					-0.07461453517896643
SDRRKESTR	9	Unmodified	_SDRRKESTR_					0	0	0		ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.8009033203125	2	567.802343	1133.59013	-1.2435	-0.00070604	-1.1612	-0.00065933	-2.4047	-0.0013654	567.8018826859566	17.899	0.1439	17.899	17.811	17.955	0					5	3	2	0	0	0	0.33548	1	4572	4572		32.751	0	1	165880			35301	5903	24315	24403	35738	35738					0.028680749583372744
SDRSVLIQ	8	Unmodified	_SDRSVLIQ_					0	0	0		nc|ENSG00000196150|P15622|ZNF250;ENSG00000196150|ENST00000417550|ZNF250	nc|ENSG00000196150|P15622|ZNF250	nc|ENSG00000196150|P15622|ZNF250	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.25592041015625	2	459.256174	916.497795	-0.66625	-0.00030598	-0.87807	-0.00040326	-1.5443	-0.00070924	459.2562827245335	28.799	0.29724	28.799	28.671	28.968	0					18	7	4	0	0	0	0.53424	1	10243	10243		56.721	1.9447	1	515200			35302	7328	24316	24404	35739	35739					0.03620596892096728
SDSANTQIRI	10	Unmodified	_SDSANTQIRI_					0	0	0			REV__TMEM131|p.K298Q|1|0.06|ENSG00000075568|chr2:97834838-97834838|T/G|missense_variant	REV__TMEM131|p.K298Q|1|0.06|ENSG00000075568|chr2:97834838-97834838|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8660583496094	3	368.859643	1103.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.783	1	19.783	19.283	20.283	0								0	0	0	0.3598	1	6031	6031		41.427	6.2484	1		+		35303	21650	24317	24405	35740	35740					0.009464481156101101
SDSIIIVQG	9	Unmodified	_SDSIIIVQG_					0	0	0			REV__SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant	REV__SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.25823974609375	2	466.258382	930.502212	0.062657	2.9215E-05	-0.95575	-0.00044562	-0.89309	-0.00041641	466.25806043342175	22.36	0.25452	22.36	22.19	22.445	0					10	7	2	0	0	0	0.2873	1	6323	6323		51.335	1.8939	1	128920	+		35304	13851	24318	24406	35741	35741					0.03418061315016985
SDSIRQGS	8	Unmodified	_SDSIRQGS_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.2061462402344	2	425.206681	848.398809	-0.75795	-0.00032229	-1.0055	-0.00042755	-1.7635	-0.00074983	425.20627092272576	15.642	0.75481	15.642	15.52	16.275	0					28	18	2	0	0	0	0.79882	1	4098	4098		19.36	4.4951	1	247080	+		35305	14383	24319	24407	35742	35742					-0.031454260727969086
SDSKILII	8	Unmodified	_SDSKILII_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7735900878906	2	444.773668	887.532783	-0.47119	-0.00020957	0.56337	0.00025057	0.092174	4.0996E-05	444.7738850139518	48.857	0.17367	48.857	48.793	48.966	0					14	9	2	0	0	0	0.28158	1	19379	19379		88.643	0	1	95861	+		35306	13399	24320	24408	35743	35743					0.08451839700069286
SDSNESQIPKT	11	Unmodified	_SDSNESQIPKT_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.836181640625	2	603.285857	1204.55716	-0.34681	-0.00020922	-1.3724	-0.00082792	-1.7192	-0.0010371	603.2848854648993	23.302	0.14491	23.302	23.21	23.354	0					5	3	2	0	0	0	0.50799	1	7685	7685		43.651	5.8393	1	680200	+		35307	13612	24321	24409	35744	35744					-0.036935966750661464
SDSTGPREAL	10	Unmodified	_SDSTGPREAL_					0	0	0		nc|ENSG00000186814|Q86W11-3|ZSCAN30;ENSG00000186814|ENST00000333206|ZSCAN30	nc|ENSG00000186814|Q86W11-3|ZSCAN30	nc|ENSG00000186814|Q86W11-3|ZSCAN30	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7530517578125	2	516.751453	1031.48835	4.6325	0.0023938	-0.28314	-0.00014631	4.3493	0.0022475	516.7512231060495	28.999	0.13565	28.999	28.915	29.05	0					7	5	2	0	0	0	0.65895	1	9400	9400		27.047	2.8446	1	63435			35308	7161	24322	24410	35745	35745					-0.02613216184090561
SDTFGAPPPV	10	Unmodified	_SDTFGAPPPV_					0	0	0			REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.242431640625	2	494.242732	986.470912	-0.63572	-0.0003142	0.42619	0.00021064	-0.20953	-0.00010356	494.2428139732351	34.255	0.59872	34.255	33.908	34.506	0					29	12	4	0	0	0	0.54861	1	13051	13051		44.117	11.304	1	670630	+		35309	15136	24323	24411	35746	35746					-0.022865117190917772
SDTLPRKKT	9	Unmodified	_SDTLPRKKT_					0	0	0		PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3033447265625	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.935	1	49.935	49.435	50.435	0								0	0	0	0.3368	1	15591	15591		27.882	1.0861	1				35310	4643	24324	24412	35747	35747					0.07224530363305348
SDTLYYYKQ	9	Unmodified	_SDTLYYYKQ_					0	0	0			REV__tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	REV__tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.7809448242188	2	590.779679	1179.5448	0.22503	0.00013294	0.056017	3.3094E-05	0.28105	0.00016604	590.7793524696978	12.925	0.29915	12.925	12.746	13.046	0					17	8	3	0	0	0	0.61124	1	2805	2805		15.642	3.435	1	345000	+		35311	21782	24325	24413	35748	35748					-0.03778588347427103
SDTNLRLK	8	Unmodified	_SDTNLRLK_					0	0	0			REV__ENST00000475716.5_1_20:17941944-17942804:-|nuORF	REV__ENST00000475716.5_1_20:17941944-17942804:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7690124511719	2	473.769448	945.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.147	1	17.147	16.647	17.647	0								0	0	0	1.7419	1	4241	4241		99.375	9.0051	1		+		35312	19530	24326	24414	35749	35749					0.04940285783413856
SDTQIYKR	8	Unmodified	_SDTQIYKR_					0	0	0			REV__ENST00000483132.1_1_1:38464619-38465084:-|nuORF	REV__ENST00000483132.1_1_1:38464619-38465084:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.7674865722656	2	505.766906	1009.51926	-0.074977	-3.7921E-05	0.41164	0.00020819	0.33666	0.00017027	505.76725474914963	24.96	0.442	24.96	24.677	25.119	0					20	13	2	0	0	0	0.66372	1	7431	7431		38.806	3.1879	1	104700	+		35313	16933	24327	24415	35750	35750					0.014879819208204026
SDTQQVVVL	9	Unmodified	_SDTQQVVVL_					0	0	0		nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5;ENSG00000240764|ENST00000252087|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7688903808594	2	494.769114	987.523675	-0.043255	-2.1401E-05	-0.51226	-0.00025345	-0.55551	-0.00027485	494.76902012174764	21.553	0.16804	21.553	21.424	21.592	0					8	3	3	0	0	0	0.37197	1	7170	7170		44.117	2.6902	1	199320			35314	7934	24328	24416	35751	35751					0.029414463437205995
SDTTTPIKL	9	Unmodified	_SDTTTPIKL_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2711486816406	2	488.27149	974.528426	0.62008	0.00030277	-1.2554	-0.00061297	-0.63531	-0.0003102	488.27090802492955	43.972	0.18354	43.972	43.903	44.086	0					22	9	3	0	0	0	0.36892	1	17170	17170		44.377	0.26039	1	88313			35315	1166	24329	24417	35752	35752					0.040143304864727725
SDTVIWNEVH	10	Unmodified	_SDTVIWNEVH_					0	0	0		ENSG00000110042|ENST00000227451|DTX4;nc|ENSG00000110042|Q9Y2E6-2|DTX4	ENSG00000110042|ENST00000227451|DTX4	ENSG00000110042|ENST00000227451|DTX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.290771484375	2	600.288202	1198.56185	3.1215	0.0018738	0.83804	0.00050307	3.9596	0.0023769	600.2887204434716	44.514	0.65641	44.514	44.026	44.683	0					45	27	2	0	0	0	0.63224	1	17866	17866		30.318	8.3578	1	109730			35316	2605	24330	24418	35753	35753					-0.02948667741634381
SDVAHGVWIGG	11	Unmodified	_SDVAHGVWIGG_					0	0	0		PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;PLXND1|p.S1268Qfs*34|1|0.3|ENSG00000004399|chr3:129569907-129569908|-/C|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2733764648438	2	549.272355	1096.53016	1.7427	0.00095723	-0.76509	-0.00042024	0.97763	0.00053698	549.2714526374097	37.961	0.3699	37.961	37.776	38.145	0					16	12	2	0	0	0	0.5473	1	14903	14903		40.778	1.5253	1	89729			35317	938	24331	24419	35754	35754					-0.014246157049228714
SDVARFRPLQ	10	Unmodified	_SDVARFRPLQ_					0	0	0			REV__ENST00000389532.8_1_9:138714293-138714353:-|nuORF	REV__ENST00000389532.8_1_9:138714293-138714353:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.8277587890625	2	594.827829	1187.64111	0.042808	2.5463E-05	0.39417	0.00023447	0.43698	0.00025993	594.8283917086488	14.115	0.25857	14.115	14.058	14.317	0					6	5	2	0	0	0	0.45669	1	3600	3600		45.972	11.8	1	311560	+		35318	18807	24332	24420	35755	35755					0.054790240031934445
SDVEETFFK	9	Unmodified	_SDVEETFFK_					0	0	0			REV__ENSG00000177646|ENST00000308982|ACAD9	REV__ENSG00000177646|ENST00000308982|ACAD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7610473632812	2	551.258579	1100.50261	3.7147	0.0020477	0.093828	5.1723E-05	3.8085	0.0020995	551.2587241282978	11.366	0.058516	11.366	11.316	11.374	0					5	3	2	0	0	0	0.57706	1	2196	2196		24.203	0.68005	1	96255	+		35319	16703	24333	24421	35756	35756					-0.04362563755807969
SDVKIYKV	8	Unmodified	_SDVKIYKV_					0	0	0		nc|ENSG00000172409|Q92989-2|CLP1;ENSG00000172409|ENST00000533682|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2786865234375	2	476.279118	950.543683	0.77879	0.00037092	-1.2668	-0.00060334	-0.48799	-0.00023242	476.2784809745406	25.588	0.16943	25.588	25.498	25.667	0					7	3	3	0	0	0	0.65148	1	9002	9002		40.778	1.972	1	288190			35320	6362	24334	24422	35757	35757					0.06643242074324007
SDVLLKLM	8	Unmodified	_SDVLLKLM_					0	0	0			REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.770263671875	2	459.770071	917.52559	-0.1549	-7.122E-05	0.20062	9.2241E-05	0.045719	2.102E-05	459.77010711431484	45.059	0.12818	45.059	44.982	45.111	0					9	7	2	0	0	0	0.61938	1	17475	17475		45.952	7.1458	1	55433	+		35321	21988	24335	24423	35758	35758					0.06352783827981057
SDVMKKYKK	9	Unmodified	_SDVMKKYKK_					0	0	0		tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.8184204101562	2	563.818084	1125.62162	0.11804	6.6554E-05	0.59761	0.00033694	0.71565	0.00040349	563.8184501312116	17.191	0.32128	17.191	16.98	17.301	0					15	6	3	0	0	0	0.43426	1	5026	5026		38.806	10.924	1	354810			35322	23052	24336	24424	35759	35759					0.0638293166805397
SDVPSSAHAG	10	Unmodified	_SDVPSSAHAG_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2122802734375	2	464.211963	926.409374	-0.43888	-0.00020373	0.42452	0.00019707	-0.014357	-6.6649E-06	464.2124554638393	29.261	0.2488	29.261	29.141	29.39	0					12	6	3	0	0	0	0.57532	1	9811	9811		37.159	1.5408	1	82035			35323	6780	24337	24425	35760	35760					-0.05677443418369421
SDVSQIVL	8	Unmodified	_SDVSQIVL_					0	0	0			REV__FAT4|p.A1287S|1|0.14|ENSG00000196159|chr4:125320270-125320270|G/T|missense_variant	REV__FAT4|p.A1287S|1|0.14|ENSG00000196159|chr4:125320270-125320270|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7391052246094	2	430.739825	859.465098	-0.24855	-0.00010706	-0.18569	-7.9986E-05	-0.43424	-0.00018705	430.7397345951282	29.19	0.48901	29.19	28.874	29.363	0					44	18	3	0	0	0	0.72381	1	9097	9097		30.504	5.0535	1	533810	+		35324	20666	24338	24426	35761	35761					0.029743897692469545
SDVTLPKNP	9	Unmodified	_SDVTLPKNP_					0	0	0		nc|ENSG00000123572|Q7Z2Y5-2|NRK;ENSG00000123572|ENST00000243300|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7633361816406	2	485.763832	969.513111	-0.089014	-4.324E-05	-0.29778	-0.00014465	-0.3868	-0.00018789	485.76359626853844	21.035	0.41023	21.035	20.781	21.192	0					21	8	4	0	0	0	0.2873	1	6900	6900		51.335	1.8939	1	738680			35325	3329	24339	24427	35762	35762					0.027134636892810704
SDWPIRIS	8	Unmodified	_SDWPIRIS_					0	0	0			REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2606201171875	2	487.258717	972.50288	0.43231	0.00021064	2.9697	0.001447	3.402	0.0016576	487.2601551154711	30.556	0.12999	30.556	30.442	30.572	0					5	3	2	0	0	0	0.64144	1	10415	10415		42.396	1.8235	1	71233	+		35326	18068	24340	24428	35763	35763					0.015529007547002038
SDYAVKIV	8	Unmodified	_SDYAVKIV_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7499694824219	2	447.750193	893.485833	-0.43442	-0.00019451	0.086911	3.8914E-05	-0.3475	-0.0001556	447.75012328583585	34.951	0.19535	34.951	34.838	35.033	0					8	5	2	0	0	0	0.37378	1	13075	13075		73.975	8.1716	1	164440			35327	3474	24341	24429	35764	35764					0.03482980148919523
SDYPTDSLGK	10	Unmodified	_SDYPTDSLGK_					0	0	0			REV__nc|ENSG00000185811|Q13422-6|IKZF1	REV__nc|ENSG00000185811|Q13422-6|IKZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7525024414062	2	541.753661	1081.49277	0.14169	7.676E-05	-2.3741	-0.0012862	-2.2324	-0.0012094	541.7522326814599	20.217	0.18141	20.217	20.12	20.302	0					10	6	2	0	0	0	0.47859	1	5613	5613		47.657	6.8792	1	203220	+		35328	17049	24342	24430	35765	35765					-0.044717517611843505
SDYQQQQSL	9	Unmodified	_SDYQQQQSL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7496948242188	2	548.74891	1095.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.008	1	28.008	27.508	28.508	0								0	0	0	0.051298	1	8986	8986		85.862	19.433	1				35329	2446	24343	24431	35766	35766					-0.06065520046695383
SEAADSKSL	9	Unmodified	_SEAADSKSL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.22259521484375	2	454.221997	906.429441	-1.1707	-0.00053176	2.9913	0.0013587	1.8206	0.00082697	454.22324181428496	31.657	0.18568	31.657	31.611	31.796	0					11	7	2	0	0	0	0.26904	1	10506	10506		53.351	2.016	1	31236			35330	2732	24344	24432	35767	35767					-0.027516924784322327
SEAADSKSL	9	Unmodified	_SEAADSKSL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2217102050781	2	454.221997	906.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.74	1	18.74	18.24	19.24	0								0	0	0	0.077333	1	5666	5666		78.264	15.285	1				35331	2732	24344	24432	35768	35768					-0.027516924784322327
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7714538574219	2	480.771657	959.528761	0.036288	1.7446E-05	-0.87494	-0.00042065	-0.83865	-0.0004032	480.7711855383192	20.989	0.15453	20.989	20.92	21.074	0					8	4	3	0	0	0	0.11898	1	5704	5704		75.043	8.614	1	249680			35332	6697	24345	24433	35769	35769					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.771484375	2	480.771657	959.528761	0.4238	0.00020375	-1.0066	-0.00048392	-0.58275	-0.00028017	480.77119670840875	21.289	0.14971	21.289	21.23	21.38	0					7	3	3	0	0	0	0.063171	1	6752	6752		90.601	28.493	1	282480			35333	6697	24345	24433	35770	35770					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7713928222656	2	480.771657	959.528761	0.51682	0.00024847	-1.6557	-0.00079601	-1.1389	-0.00054753	480.77071835249876	21.316	0.40778	21.316	21.217	21.624	0					19	9	4	0	0	0	0.026538	1	6750	6750		112.41	40.533	1	1919000			35334	6697	24345	24433	35771	35771					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7712707519531	2	480.771657	959.528761	-0.10877	-5.2292E-05	-0.61953	-0.00029785	-0.7283	-0.00035014	480.7713394940967	21.184	0.31217	21.184	21.129	21.441	0					14	6	4	0	0	0	0.022525	1	6995	6995		117.81	35.061	1	1283800			35335	6697	24345	24433	35772	35772					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7711181640625	2	480.771657	959.528761	0.079187	3.8071E-05	-0.86276	-0.00041479	-0.78357	-0.00037672	480.7710770602522	21.087	0.1442	21.087	20.992	21.136	0					5	3	2	0	0	0	0.063171	1	6038	6038		90.601	20.973	1	179690			35336	6697	24345	24433	35773	35773					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.77130126953125	2	480.771657	959.528761	-0.63726	-0.00030638	-0.41472	-0.00019939	-1.052	-0.00050576	480.7713956724345	21.198	0.3606	21.198	21.093	21.454	0					16	7	4	0	0	0	0.063171	1	6871	6871		90.601	21.814	1	2295900			35337	6697	24345	24433	35774	35774					0.047377502063341126
SEADSHCL	8	Carbamidomethyl (C)	_SEADSHC(Carbamidomethyl (C))L_	SEADSHC(1)L		SEADSHC(56)L		0	1	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.1867370605469	2	459.684724	917.354895	-0.91008	-0.00041835	-0.91807	-0.00042202	-1.8282	-0.00084038	459.68467431221626	20.028	0.12066	20.028	19.943	20.064	0					9	4	3	0	0	0	0.54629	1	5526	5526		55.504	7.5886	1	52460			35338	11716	24346	24434	35775	35775	464				-0.10708778561445342
SEADSHCL	8	Unmodified	_SEADSHCL_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.1737365722656	2	431.173992	860.333432	-0.49157	-0.00021195	0.19381	8.3566E-05	-0.29776	-0.00012839	431.17402314840433	21.734	0.16684	21.734	21.675	21.842	0					5	3	2	0	0	0	0.52345	1	7266	7266		57.811	13.28	1	117790			35339	11716	24346	24435	35776	35776					-0.10232163590160326
SEADSHCL	8	Unmodified	_SEADSHCL_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.1736755371094	2	431.173992	860.333432	-0.46328	-0.00019976	-0.22585	-9.738E-05	-0.68913	-0.00029714	431.1739743594533	21.783	0.26609	21.783	21.687	21.953	0					8	5	2	0	0	0	0.60719	1	7140	7140		47.916	15.961	1	121250			35340	11716	24346	24435	35777	35777					-0.10232163590160326
SEAEAAKNAL	10	Unmodified	_SEAEAAKNAL_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2562255859375	2	502.256371	1002.49819	-0.92086	-0.00046251	0.75921	0.00038132	-0.16165	-8.1189E-05	502.2567218123261	24.021	0.28303	24.021	23.906	24.189	0					21	9	4	0	0	0	0.041742	1	7286	7286		112.11	23.078	1	954400			35341	11598	24347	24436	35778	35778					-0.002960281787295571
SEAEAAKNAL	10	Unmodified	_SEAEAAKNAL_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.25653076171875	2	502.256371	1002.49819	0.13846	6.9541E-05	-0.16335	-8.2042E-05	-0.024889	-1.2501E-05	502.2564186838098	24.085	0.19518	24.085	23.994	24.189	0					10	4	3	0	0	0	0.16745	1	7464	7464		83.647	9.482	1	299680			35342	11598	24347	24436	35779	35779					-0.002960281787295571
SEAEAAKNAL	10	Unmodified	_SEAEAAKNAL_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.25634765625	2	502.256371	1002.49819	1.1461	0.00057562	-1.1414	-0.00057327	0.0046929	2.357E-06	502.25585819918876	24.221	0.26712	24.221	24.113	24.38	0					14	5	4	0	0	0	0.041742	1	8337	8337		112.11	24.353	1	2107700			35343	11598	24347	24436	35780	35780					-0.002960281787295571
SEAEKVYIV	9	Unmodified	_SEAEKVYIV_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2791748046875	2	519.279315	1036.54408	1.3852	0.00071933	-1.4178	-0.00073622	-0.032535	-1.6895E-05	519.278337472763	34.273	0.32154	34.273	34.143	34.465	0					18	8	3	0	0	0	0.18416	1	12758	12758		63.534	14.323	1	325480			35344	1550	24348	24437	35781	35781					0.02726617003509091
SEAEKVYIV	9	Unmodified	_SEAEKVYIV_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2805786132812	2	519.279315	1036.54408	1.6252	0.00084392	0.21436	0.00011132	1.8395	0.00095523	519.279548012129	34.266	0.33112	34.266	34.173	34.504	0					13	8	3	0	0	0	0.24334	1	13208	13208		56.434	11.903	1	539370			35345	1550	24348	24437	35782	35782					0.02726617003509091
SEAFKPKLA	9	Unmodified	_SEAFKPKLA_					0	0	0			REV__ENSG00000117862|ENST00000371626|TXNDC12	REV__ENSG00000117862|ENST00000371626|TXNDC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.784423828125	2	495.784567	989.554582	-0.38047	-0.00018863	0.57352	0.00028434	0.19305	9.5712E-05	495.7847666987942	38.65	0.20911	38.65	38.577	38.786	0					19	9	3	0	0	0	0.24334	1	14707	14707		40.778	0	1	517010	+		35346	14207	24349	24438	35783	35783					0.0593864444861083
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.1905517578125	2	401.1905	800.366446	1.8348	0.00073612	-2.1511	-0.000863	-0.31627	-0.00012688	401.1896516626744	17.979	0.13594	17.979	17.89	18.026	0					5	3	2	0	0	0	0.60719	1	4389	4389		47.916	0	1	148160			35347	7711;7903;7718	24350	24439	35784	35784					-0.04172213475806075
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.1905517578125	2	401.1905	800.366446	0.60247	0.00024171	-0.53071	-0.00021291	0.071767	2.8792E-05	401.19029470331475	17.962	0.20057	17.962	17.88	18.08	0					12	5	3	0	0	0	0.24915	1	4400	4400		102.77	0	1	687830			35348	7711;7903;7718	24350	24439	35785	35785					-0.04172213475806075
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.19061279296875	2	401.1905	800.366446	0.94137	0.00037767	-1.3965	-0.00056028	-0.45517	-0.00018261	401.1899936311566	18.301	0.27545	18.301	18.209	18.485	0					14	6	3	0	0	0	0.22799	1	5320	5320		124.59	0	1	3137800			35349	7711;7903;7718	24350	24439	35786	35786					-0.04172213475806075
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000204592|ENST00000376630|HLA-E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.1903991699219	2	401.1905	800.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.286	1	18.286	17.786	18.786	0								0	0	0	1.7419	1	5586	5586		111.65	0	1				35350	7711;7903;7718	24350	24439	35787	35787					-0.04172213475806075
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.1905212402344	2	401.1905	800.366446	0.16894	6.7777E-05	-0.23081	-9.26E-05	-0.061874	-2.4823E-05	401.19034374597464	18.076	0.25585	18.076	17.969	18.225	0					9	5	3	0	0	0	0.29152	1	4632	4632		85.359	0	1	504300			35351	7711;7903;7718	24350	24439	35788	35788					-0.04172213475806075
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000204592|ENST00000376630|HLA-E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.1903991699219	2	401.1905	800.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.083	1	18.083	17.583	18.583	0								0	0	0	1.7419	1	4648	4648		73.975	0	1				35352	7711;7903;7718	24350	24439	35789	35789					-0.04172213475806075
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.19061279296875	2	401.1905	800.366446	-0.60488	-0.00024267	0.74673	0.00029958	0.14185	5.6908E-05	401.1907637291699	18.231	0.41298	18.231	18.125	18.538	0					14	8	2	0	0	0	0.2516	1	5428	5428		138.24	0	1	3246600			35353	7711;7903;7718	24350	24439	35790	35790					-0.04172213475806075
SEAGSRIVL	9	Unmodified	_SEAGSRIVL_					0	0	0		nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;nc|ENSG00000159322|Q9BRR6-4|ADPGK;nc|ENSG00000159322|Q9BRR6-3|ADPGK;ENST00000562621.1_1_15:73044684-73048205:-|nuORF;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF	nc|ENSG00000159322|Q9BRR6-2|ADPGK	nc|ENSG00000159322|Q9BRR6-2|ADPGK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2633056640625	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.741	1	30.741	30.241	31.241	0								0	0	0	0.17378	1	9822	9822		54.776	0.01164	1				35354	5307	24351	24440	35791	35791					0.04540883409140406
SEAGSRIVL	9	Unmodified	_SEAGSRIVL_					0	0	0		nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;nc|ENSG00000159322|Q9BRR6-4|ADPGK;nc|ENSG00000159322|Q9BRR6-3|ADPGK;ENST00000562621.1_1_15:73044684-73048205:-|nuORF;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF	nc|ENSG00000159322|Q9BRR6-2|ADPGK	nc|ENSG00000159322|Q9BRR6-2|ADPGK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.26397705078125	2	466.263999	930.513445	0.44073	0.0002055	-0.77267	-0.00036027	-0.33193	-0.00015477	466.2635844062426	31.045	0.27058	31.045	30.955	31.225	0					14	6	3	0	0	0	0.12834	1	11257	11257		72.879	8.672	1	551130			35355	5307	24351	24440	35792	35792					0.04540883409140406
SEAIKGAVVG	10	Unmodified	_SEAIKGAVVG_					0	0	0		ENST00000506477.5_1_5:137906647-137911007:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	ENST00000506477.5_1_5:137906647-137911007:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.765869140625	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.596	1	24.596	24.096	25.096	0								0	0	0	0.19992	1	8627	8627		64.207	5.4253	1				35356	2775	24352	24441	35793	35793					0.05061767551910634
SEAITFQKL	9	Unmodified	_SEAITFQKL_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;ENST00000483579.1_1_1:223934831-223936953:+|nuORF	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7883911132812	2	518.787307	1035.56006	1.5966	0.00082827	-1.58	-0.0008197	0.016519	8.5697E-06	518.7866968096969	38.336	0.11623	38.336	38.277	38.393	0					8	4	2	0	0	0	0.15163	1	15033	15033		67.494	21.037	1	137240			35357	5510	24353	24442	35794	35794					0.04370323240414109
SEAITFQKL	9	Unmodified	_SEAITFQKL_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;ENST00000483579.1_1_1:223934831-223936953:+|nuORF	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7877197265625	2	518.787307	1035.56006	3.3501	0.001738	-3.5718	-0.001853	-0.22172	-0.00011503	518.7856581315766	38.285	0.25114	38.285	38.099	38.35	0					10	5	3	0	0	0	0.04067	1	15035	15035		98.582	21.808	1	240710			35358	5510	24353	24442	35795	35795					0.04370323240414109
SEAKGLVTL	9	Unmodified	_SEAKGLVTL_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-2|ASNS	TRRAP-ASNS|1|fusion;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.26824951171875	2	459.26875	916.522947	-0.082629	-3.7949E-05	-0.25847	-0.00011871	-0.3411	-0.00015666	459.26857345918205	34.167	0.20244	34.167	34.071	34.274	0					14	6	3	0	0	0	0.032383	1	12065	12065		106.68	29.365	1	174970			35359	23071;1453	24354	24443	35796	35796					0.06134651694674176
SEAKGLVTL	9	Unmodified	_SEAKGLVTL_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-2|ASNS	TRRAP-ASNS|1|fusion;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2686462402344	2	459.26875	916.522947	-0.44536	-0.00020454	0.217	9.9661E-05	-0.22836	-0.00010488	459.26885680999163	34.353	0.45541	34.353	34.245	34.7	0					21	9	3	0	0	0	0.01873	1	13168	13168		124.08	8.5861	1	3080500			35360	23071;1453	24354	24443	35797	35797					0.06134651694674176
SEAKPAAVA	9	Unmodified	_SEAKPAAVA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.2320251464844	2	422.232168	842.449782	-0.18119	-7.6504E-05	-0.34275	-0.00014472	-0.52394	-0.00022122	422.23200372389203	17.509	0.11788	17.509	17.449	17.567	0					4	2	2	0	0	0	0.16002	1	5223	5223		66.429	3.123	1	278760			35361	4144	24355	24444	35798	35798					0.022255229720371972
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.7510070800781	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.546	1	18.546	18.046	19.046	0								0	0	0	0.34115	1	4631	4631		44.377	15.228	1				35362	4144	24356	24445	35799	35799					0.026691945177958587
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7506103515625	2	457.750724	913.486896	0.20039	9.173E-05	-0.56755	-0.0002598	-0.36716	-0.00016807	457.75041196236685	18.848	0.14013	18.848	18.773	18.913	0					10	4	3	0	0	0	0.21754	1	5586	5586		77.318	6.0219	1	353460			35363	4144	24356	24445	35800	35800					0.026691945177958587
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7503662109375	2	457.750724	913.486896	-0.15287	-6.9977E-05	-0.61256	-0.0002804	-0.76543	-0.00035038	457.75040921988375	18.772	0.13947	18.772	18.711	18.85	0					8	3	3	0	0	0	0.2978	1	5831	5831		67.494	14.142	1	634620			35364	4144	24356	24445	35801	35801					0.026691945177958587
SEAPGQRAL	9	Unmodified	_SEAPGQRAL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7453918457031	2	464.745973	927.477394	0.084246	3.9153E-05	-0.67431	-0.00031338	-0.59006	-0.00027423	464.74558807261764	21.07	0.15579	21.07	20.99	21.145	0					7	4	2	0	0	0	0.1424	1	5741	5741		69.628	11.398	1	329900			35365	2871	24357	24446	35802	35802					0.010754262322620889
SEAPGQRAL	9	Unmodified	_SEAPGQRAL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7457275390625	2	464.745973	927.477394	0.54321	0.00025245	-0.80947	-0.0003762	-0.26626	-0.00012374	464.7454576954928	21.395	0.36276	21.395	21.217	21.579	0					15	8	3	0	0	0	0.07136	1	6804	6804		87.696	23.489	1	1710600			35366	2871	24357	24446	35803	35803					0.010754262322620889
SEAPGQRAL	9	Unmodified	_SEAPGQRAL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7458190917969	2	464.745973	927.477394	-0.77186	-0.00035872	-0.48894	-0.00022723	-1.2608	-0.00058595	464.74545460042395	21.103	0.32321	21.103	21	21.324	0					18	10	3	0	0	0	0.25716	1	5995	5995		54.776	3.4409	1	421450			35367	2871	24357	24446	35804	35804					0.010754262322620889
SEAPGQRAL	9	Unmodified	_SEAPGQRAL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.74542236328125	2	464.745973	927.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.295	1	21.295	20.795	21.795	0								0	0	0	0.029874	1	7041	7041		95.815	13.065	1				35368	2871	24357	24446	35805	35805					0.010754262322620889
SEAPGQRAL	9	Unmodified	_SEAPGQRAL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.74566650390625	2	464.745973	927.477394	-0.48095	-0.00022352	0.43888	0.00020397	-0.042073	-1.9553E-05	464.7459812844273	21.163	0.19712	21.163	21.064	21.261	0					9	4	3	0	0	0	0.19605	1	6094	6094		62.107	15.341	1	268760			35369	2871	24357	24446	35806	35806					0.010754262322620889
SEAPGQRAL	9	Unmodified	_SEAPGQRAL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.74554443359375	2	464.745973	927.477394	-2.3404	-0.0010877	0.14927	6.9374E-05	-2.1911	-0.0010183	464.7458398135288	21.145	0.19896	21.145	21.095	21.294	0					6	4	2	0	0	0	0.15163	1	6087	6087		67.494	14.557	1	140550			35370	2871	24357	24446	35807	35807					0.010754262322620889
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7138671875	2	457.714339	913.414125	0.77574	0.00035507	-1.3099	-0.00059957	-0.53419	-0.00024451	457.71362360145486	19.54	0.52995	19.54	19.356	19.886	0					29	12	3	0	0	0	0.023928	1	5922	5922		115.49	55.376	1	310110			35371	6760;10100	24358	24447	35808	35808					-0.04604559275617248
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.71441650390625	2	457.714339	913.414125	-1.0114	-0.00046294	0.57391	0.00026269	-0.43751	-0.00020026	457.71457005165195	19.306	0.47572	19.306	19.086	19.562	0					27	14	2	0	0	0	0.22823	1	5160	5160		58.246	4.8948	1	136440			35372	6760;10100	24358	24447	35809	35809					-0.04604559275617248
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7141418457031	2	457.714339	913.414125	0.72186	0.00033041	-0.72433	-0.00033154	-0.0024675	-1.1294E-06	457.71400298329746	19.417	1.1167	19.417	19.214	20.331	0					47	22	3	0	0	0	0.022525	1	6149	6149		117.81	66.618	1	817620			35373	6760;10100	24358	24447	35810	35810					-0.04604559275617248
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.71435546875	2	457.714339	913.414125	0.18713	8.5652E-05	-0.82442	-0.00037735	-0.63729	-0.0002917	457.7138201405487	19.349	0.43649	19.349	19.151	19.587	0					17	10	2	0	0	0	0.037924	1	5219	5219		101.25	56.722	1	54427			35374	6760;10100	24358	24447	35811	35811					-0.04604559275617248
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7141418457031	2	457.714339	913.414125	0.87934	0.00040249	-1.0914	-0.00049955	-0.21205	-9.7057E-05	457.71373083934617	19.433	0.81786	19.433	19.276	20.094	0					33	16	3	0	0	0	0.022525	1	6017	6017		117.81	54.505	1	774210			35375	6760;10100	24358	24447	35812	35812					-0.04604559275617248
SEAQVHLAL	9	Unmodified	_SEAQVHLAL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2643127441406	2	484.263999	966.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.194	1	34.194	33.694	34.694	0								0	0	0	0.28996	1	12081	12081		37.159	1.5408	1				35376	1832	24359	24448	35813	35813					0.028848834091377284
SEAREKAVL	9	Unmodified	_SEAREKAVL_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000594221.5_1_19:7706941-7707474:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.7815856933594	2	501.782556	1001.55056	0.46619	0.00023393	-4.0021	-0.0020082	-3.5359	-0.0017742	501.781233352843	19.37	0.074444	19.37	19.338	19.413	0					4	2	2	0	0	0	0.35021	1	5008	5008		45.972	1.8554	1	136940			35377	1571	24360	24449	35814	35814					0.04984554954910436
SEAREKAVL	9	Unmodified	_SEAREKAVL_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000594221.5_1_19:7706941-7707474:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7812194824219	2	501.782556	1001.55056	0.041802	2.0976E-05	-3.1161	-0.0015636	-3.0743	-0.0015426	501.781073185008	19.603	0.11512	19.603	19.527	19.642	0					6	2	3	0	0	0	0.098791	1	6226	6226		79.713	10.085	1	488910			35378	1571	24360	24449	35815	35815					0.04984554954910436
SEARIQQL	8	Unmodified	_SEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7615661621094	2	472.761623	943.508694	-1.5047	-0.00071136	0.99989	0.00047271	-0.50479	-0.00023865	472.7623819305489	26.379	0.22557	26.379	26.274	26.499	0					11	7	3	0	0	0	0.64144	1	8295	8295		42.396	1.618	1	126050			35379	1989	24361	24450	35816	35816					0.03467999266388233
SEARIQQL	8	Unmodified	_SEARIQQL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7618713378906	2	472.761623	943.508694	-2.4678	-0.0011667	3.0238	0.0014296	0.55606	0.00026288	472.7626740888981	26.464	0.13904	26.464	26.37	26.509	0					5	3	2	0	0	0	0.51384	1	8529	8529		58.782	2.0609	1	99788			35380	1989	24361	24450	35817	35817					0.03467999266388233
SEASLHPVL	9	Unmodified	_SEASLHPVL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.75830078125	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.433	1	33.433	32.933	33.933	0								0	0	0	0.13522	1	12708	12708		63.306	11.971	1				35381	4086	24362	24451	35818	35818					0.024854810348415413
SEASQGFRFL	10	Unmodified	_SEASQGFRFL_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2874145507812	2	571.285463	1140.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.276	1	44.276	43.776	44.776	0								0	0	0	0.2634	1	17741	17741		56.434	10.482	1				35382	4089	24363	24452	35819	35819					-0.008283465334216089
SEAVANGGP	9	Unmodified	_SEAVANGGP_					0	0	0		ENST00000322177.5_1_15:75247374-75247581:-|nuORF	ENST00000322177.5_1_15:75247374-75247581:-|nuORF	ENST00000322177.5_1_15:75247374-75247581:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.1904296875	2	401.1905	800.366446	0.4862	0.00019506	-0.61895	-0.00024832	-0.13275	-5.3258E-05	401.1902730407248	18.262	0.2627	18.262	18.159	18.421	0					8	5	2	0	0	0	0.55379	1	5447	5447		26.693	1.2427	1	1126500			35383	8623	24364	24453	35820	35820					-0.04172213475806075
SECSISGTRK	10	Unmodified	_SECSISGTRK_					0	0	0		ENST00000547003.1_1_12:49916566-49919899:+|nuORF	ENST00000547003.1_1_12:49916566-49919899:+|nuORF	ENST00000547003.1_1_12:49916566-49919899:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2630615234375	2	534.26113	1066.50771	0.29028	0.00015509	2.9338	0.0015674	3.2241	0.0017225	534.2634596087089	32.869	0.83375	32.869	32.343	33.176	0					28	20	2	0	0	0	0.59255	1	12465	12465		37.812	4.9991	1	252290			35384	10584	24365	24454	35821	35821					-0.02288583164818192
SECYVVVTI	9	Unmodified	_SECYVVVTI_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.5058288574219	3	338.172171	1011.49468	-0.70269	-0.00023763	-1.6854	-0.00056996	-2.3881	-0.00080759	338.1717208770579	33.869	0.11432	33.869	33.798	33.913	0					7	4	2	0	0	0	0.4966	1	11401	11401		32.812	7.2384	1	76065			35385	5771	24366	24455	35822	35822					-0.010604142769125247
SEDAEKKVL	9	Unmodified	_SEDAEKKVL_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.77484130859375	2	509.774396	1017.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.823	1	19.823	19.323	20.323	0								0	0	0	0.001501	1	5201	5201		124.08	11.669	1				35386	1316	24367	24456	35823	35823					0.026174289981327092
SEDAEKKVL	9	Unmodified	_SEDAEKKVL_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7741394042969	2	509.774396	1017.53424	0.94877	0.00048366	-0.65285	-0.0003328	0.29593	0.00015086	509.7740262892654	20.156	0.29157	20.156	20.064	20.356	0					18	6	4	0	0	0	0.0080613	1	6214	6214		145.16	24.287	1	1925000			35387	1316	24367	24456	35824	35824					0.026174289981327092
SEDAEKKVL	9	Unmodified	_SEDAEKKVL_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.77435302734375	2	509.774396	1017.53424	-0.47866	-0.00024401	4.4259	0.0022562	3.9472	0.0020122	509.7767473806034	19.877	0.23156	19.877	19.779	20.011	0					15	7	3	0	0	0	0.054723	1	5441	5441		93.598	15.334	1	643100			35388	1316	24367	24456	35825	35825					0.026174289981327092
SEDAEKKVL	9	Unmodified	_SEDAEKKVL_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7744445800781	2	509.774396	1017.53424	1.1806	0.00060186	-0.26805	-0.00013664	0.9126	0.00046522	509.7741048398022	20.071	0.16707	20.071	19.961	20.128	0					7	3	3	0	0	0	0.016683	1	6438	6438		127.46	11.968	1	4470200			35389	1316	24367	24456	35826	35826					0.026174289981327092
SEDAEKKVL	9	Unmodified	_SEDAEKKVL_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7749328613281	2	509.774396	1017.53424	0.2316	0.00011806	1.6232	0.00082744	1.8548	0.00094551	509.7750612563645	19.923	0.23413	19.923	19.827	20.062	0					9	5	3	0	0	0	0.023928	1	5495	5495		115.49	11.437	1	505340			35390	1316	24367	24456	35827	35827					0.026174289981327092
SEDAEKKVL	9	Unmodified	_SEDAEKKVL_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7740478515625	2	509.774396	1017.53424	-1.83	-0.0009329	4.0184	0.0020485	2.1884	0.0011156	509.77556833709895	19.914	0.15393	19.914	19.811	19.964	0					7	3	3	0	0	0	0.020674	1	5490	5490		120.87	16.855	1	365020			35391	1316	24367	24456	35828	35828					0.026174289981327092
SEDAEKKVL	9	Unmodified	_SEDAEKKVL_					0	0	0		nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF	nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-2|YBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.77423095703125	2	509.774396	1017.53424	1.357	0.00069175	-0.42045	-0.00021434	0.93653	0.00047742	509.77410653391615	20.085	0.16517	20.085	19.978	20.143	0					10	3	4	0	0	0	0.0080613	1	6307	6307		145.16	12.398	1	3962200			35392	1316	24367	24456	35829	35829					0.026174289981327092
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.24005126953125	2	504.239332	1006.46411	0.63429	0.00031983	0.19469	9.817E-05	0.82898	0.000418	504.2395033476267	34.439	0.15146	34.439	34.344	34.495	0					12	7	2	0	0	0	0.07136	1	11253	11253		87.696	5.4559	1	92586			35393	6185	24368	24457	35830	35830					-0.03886192661968835
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7403869628906	2	504.239332	1006.46411	-0.062471	-3.15E-05	-0.30229	-0.00015243	-0.36476	-0.00018393	504.7408525116461	34.445	0.2938	34.445	34.338	34.631	0					20	13	2	0	0	0	0.087861	1	11246	11246		82.241	7.9855	1	66716			35394	6185	24368	24457	35831	35831					-0.03886192661968835
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.23883056640625	2	504.239332	1006.46411	0.77222	0.00038938	-1.7163	-0.0008654	-0.94404	-0.00047602	504.2386019152056	34.694	0.24633	34.694	34.612	34.859	0					17	6	4	0	0	0	0.023928	1	12956	12956		115.49	22.351	1	782570			35395	6185	24368	24457	35832	35832					-0.03886192661968835
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2392272949219	2	504.239332	1006.46411	-0.056321	-2.8399E-05	0.16162	8.1495E-05	0.1053	5.3096E-05	504.2392874793281	34.693	0.63203	34.693	34.521	35.153	0					36	16	3	0	0	0	0.048471	2	12951	12951;12991		95.815	27.028	1	524700			35396	6185	24368	24457	35833;35834	35833					-0.03886192661968835
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.23870849609375	2	504.239332	1006.46411	-0.8296	-0.00041832	-0.20423	-0.00010298	-1.0338	-0.0005213	504.23943083808234	34.518	0.22022	34.518	34.399	34.619	0					21	9	3	0	0	0	0.11898	1	11632	11632		75.043	7.5496	1	164930			35397	6185	24368	24457	35835	35835					-0.03886192661968835
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.23895263671875	2	504.239332	1006.46411	1.0333	0.00052104	-2.8096	-0.0014167	-1.7762	-0.00089565	504.2384133219734	34.693	0.28372	34.693	34.615	34.899	0					27	8	5	0	0	0	0.035062	1	13400	13400		104.06	15.414	1	1303500			35398	6185	24368	24457	35836	35836					-0.03886192661968835
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.23919677734375	2	504.239332	1006.46411	1.2029	0.00060656	-1.8684	-0.00094214	-0.66552	-0.00033558	504.23853827838724	34.627	0.26181	34.627	34.522	34.784	0					13	5	4	0	0	0	0.023928	1	13300	13300		115.49	14.282	1	1012800			35399	6185	24368	24457	35837	35837					-0.03886192661968835
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.23931884765625	2	504.239332	1006.46411	2.9336	0.0014792	-4.0229	-0.0020285	-1.0893	-0.00054929	504.23775357983965	34.659	0.60653	34.659	34.506	35.113	0					40	12	6	0	0	0	0.035062	1	13318	13318		104.06	26.739	1	1631500			35400	6185	24368	24457	35838	35838					-0.03886192661968835
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2437133789062	2	517.24346	1032.47237	0.36616	0.00018939	-0.29767	-0.00015397	0.068488	3.5425E-05	517.2432918264589	23.429	0.44452	23.429	23.21	23.655	0					33	14	3	0	0	0	0.16806	1	6725	6725		65.465	8.7443	1	306300			35401	1694;2371	24369	24458	35839	35839					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.24365234375	2	517.24346	1032.47237	0.044373	2.2952E-05	0.28032	0.00014499	0.32469	0.00016795	517.2436148353734	23.689	0.49161	23.689	23.515	24.006	0					38	11	4	0	0	0	0.02953	1	7843	7843		109.48	33.309	1	2410400			35402	1694;2371	24369	24458	35840	35840					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2433471679688	2	517.24346	1032.47237	0.032275	1.6694E-05	0.11314	5.852E-05	0.14541	7.5214E-05	517.2434558388981	23.428	0.40049	23.428	23.276	23.676	0					36	14	3	0	0	0	0.037924	1	7017	7017		101.25	16.337	1	567050			35403	1694;2371	24369	24458	35841	35841					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2435302734375	2	517.24346	1032.47237	1.5171	0.0007847	-1.8867	-0.00097591	-0.36966	-0.00019121	517.2426176946417	23.615	0.76847	23.615	23.445	24.213	0					44	15	4	0	0	0	0.02953	1	8212	8212		109.48	24.318	1	3005900			35404	1694;2371	24369	24458	35842	35842					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2435302734375	2	517.24346	1032.47237	0.8644	0.00044711	-0.75492	-0.00039048	0.10948	5.6629E-05	517.2431894500145	23.463	0.41968	23.463	23.341	23.76	0					15	10	2	0	0	0	0.22837	1	7203	7203		58.23	6.7022	1	165640			35405	1694;2371	24369	24458	35843	35843					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-2|TNPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2439575195312	2	517.24346	1032.47237	1.5497	0.00080156	-1.8553	-0.00095963	-0.3056	-0.00015807	517.2423782559139	23.626	0.71208	23.626	23.418	24.13	0					27	14	3	0	0	0	0.15558	1	8075	8075		66.962	16.928	1	1151700			35406	1694;2371	24369	24458	35844	35844					-0.04256922420995579
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.26873779296875	2	502.268947	1002.52334	-0.073649	-3.6992E-05	0.19253	9.6701E-05	0.11888	5.9709E-05	502.26895481073933	39.219	0.18826	39.219	39.125	39.313	0					12	6	2	0	0	0	0.42902	1	14928	14928		39.253	2.8061	1	153100			35407	6142	24370	24459	35845	35845					0.022180266238478907
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.268798828125	2	502.268947	1002.52334	0.97496	0.00048969	-1.3696	-0.00068792	-0.39467	-0.00019823	502.26808680769227	39.171	0.32072	39.171	39.05	39.37	0					21	11	3	0	0	0	0.023928	1	15384	15384		115.49	33.254	1	314040			35408	6142	24370	24459	35846	35846					0.022180266238478907
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2691955566406	2	502.268947	1002.52334	0.13916	6.9897E-05	-0.13013	-6.5359E-05	0.0090362	4.5386E-06	502.2689455367137	38.934	0.17348	38.934	38.851	39.025	0					10	9	2	0	0	0	0.22837	1	13908	13908		58.23	10.573	1	36497			35409	6142	24370	24459	35847	35847					0.022180266238478907
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2685241699219	2	502.268947	1002.52334	1.1477	0.00057647	-1.3477	-0.00067689	-0.19993	-0.00010042	502.26820511157246	39.119	0.33334	39.119	38.967	39.301	0					16	7	3	0	0	0	0.056004	1	15445	15445		93.143	13.204	1	337320			35410	6142	24370	24459	35848	35848					0.022180266238478907
SEDGAIHVI	9	Unmodified	_SEDGAIHVI_					0	0	0		SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;SEC14L1|p.I147Lfs*3|1|0.38|ENSG00000129657|chr17:77193509-77193509|A/-|frameshift_variant	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7402038574219	2	470.740357	939.46616	-0.12483	-5.8765E-05	-0.50001	-0.00023538	-0.62485	-0.00029414	470.7400781284541	34.02	0.15664	34.02	33.92	34.077	0					5	3	2	0	0	0	0.032656	1	13062	13062		106.42	35.12	1	158380			35411	3605	24371	24460	35849	35849					-0.005993958618546458
SEDGDAHVL	9	Unmodified	_SEDGDAHVL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.71160888671875	2	471.711796	941.40904	0.2025	9.5523E-05	-2.7513	-0.0012978	-2.5488	-0.0012023	471.7114801925015	25.587	0.34087	25.587	25.415	25.756	0					22	8	4	0	0	0	0.13519	1	8777	8777		71.296	20.103	1	381510			35412	4448	24372	24461	35850	35850					-0.0640086313824213
SEDIRTEAL	9	Unmodified	_SEDIRTEAL_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2617797851562	2	517.261653	1032.50875	-1.4657	-0.00075816	2.2559	0.0011669	0.79018	0.00040873	517.2627941627655	30.526	0.16285	30.526	30.42	30.583	0					7	4	2	0	0	0	0.21419	1	10405	10405		59.931	5.1545	1	64027			35413	4289	24373	24462	35851	35851					-0.006200455242833414
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.3062133789062	2	530.305864	1058.59717	0.43266	0.00022944	0.29314	0.00015545	0.7258	0.0003849	530.3060278609621	25.581	0.24508	25.581	25.463	25.708	0					19	8	3	0	0	0	0.055856	1	7714	7714		93.195	10.445	1	379970			35414	6381	24374	24463	35852	35852					0.07021994786191499
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3062133789062	2	530.305864	1058.59717	0.11605	6.1543E-05	0.56424	0.00029922	0.6803	0.00036076	530.306125760137	25.911	0.35057	25.911	25.732	26.083	0					16	6	3	0	0	0	0.028876	1	8859	8859		110.12	16.924	1	3020900			35415	6381	24374	24463	35853	35853					0.07021994786191499
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3070678710938	2	530.305864	1058.59717	-0.033309	-1.7664E-05	1.5585	0.00082649	1.5252	0.00080883	530.3065752805322	25.648	0.20361	25.648	25.531	25.734	0					10	6	2	0	0	0	0.087861	1	7988	7988		82.241	18.934	1	125370			35416	6381	24374	24463	35854	35854					0.07021994786191499
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.3060913085938	2	530.305864	1058.59717	0.2871	0.00015225	0.55667	0.0002952	0.84377	0.00044745	530.3060435788906	25.871	0.29643	25.871	25.721	26.017	0					12	4	4	0	0	0	0.019882	1	9197	9197		122.18	28.981	1	1581700			35417	6381	24374	24463	35855	35855					0.07021994786191499
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.305908203125	2	530.305864	1058.59717	-1.2073	-0.00064023	1.4309	0.00075882	0.22362	0.00011859	530.3065710413537	25.678	0.18055	25.678	25.597	25.778	0					11	4	3	0	0	0	0.028876	1	8211	8211		110.12	16.924	1	500970			35418	6381	24374	24463	35856	35856					0.07021994786191499
SEDKKRPSL	9	Unmodified	_SEDKKRPSL_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2943115234375	2	530.293288	1058.57202	1.1242	0.00059618	1.9076	0.0010116	3.0318	0.0016078	530.2941820846738	16.337	0.15657	16.337	16.234	16.391	0					10	7	2	0	0	0	0.22837	1	3688	3688		58.23	14.113	1	85736			35419	4403	24375	24464	35857	35857					0.04507939983614051
SEDKKRPSL	9	Unmodified	_SEDKKRPSL_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2941284179688	2	530.293288	1058.57202	0.43136	0.00022875	0.49644	0.00026326	0.9278	0.00049201	530.2934305226208	16.317	0.17217	16.317	16.21	16.382	0					17	8	3	0	0	0	0.21263	1	3684	3684		60.118	22.959	1	180880			35420	4403	24375	24464	35858	35858					0.04507939983614051
SEDKKRPSL	9	Unmodified	_SEDKKRPSL_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2937622070312	2	530.293288	1058.57202	2.3856	0.0012651	-0.70828	-0.0003756	1.6773	0.00088947	530.2925382129246	16.581	0.34485	16.581	16.407	16.752	0					15	8	3	0	0	0	0.12834	1	4512	4512		72.879	4.0331	1	1147300			35421	4403	24375	24464	35859	35859					0.04507939983614051
SEDKKRPSL	9	Unmodified	_SEDKKRPSL_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.29345703125	2	530.293288	1058.57202	0.11594	6.1483E-05	0.58095	0.00030807	0.69689	0.00036956	530.2935265626895	16.616	0.38836	16.616	16.392	16.78	0					19	9	3	0	0	0	0.11898	1	4506	4506		75.043	8.614	1	1263500			35422	4403	24375	24464	35860	35860					0.04507939983614051
SEDKKRPSL	9	Unmodified	_SEDKKRPSL_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2943115234375	2	530.293288	1058.57202	-0.044791	-2.3752E-05	1.6782	0.00088994	1.6334	0.00086619	530.2940925463168	16.33	0.2536	16.33	16.189	16.443	0					18	9	3	0	0	0	0.037712	1	3886	3886		101.46	23.196	1	441380			35423	4403	24375	24464	35861	35861					0.04507939983614051
SEDKKRPSL	9	Unmodified	_SEDKKRPSL_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2936401367188	2	530.293288	1058.57202	1.7302	0.00091752	-0.59206	-0.00031397	1.1382	0.00060355	530.2927511739537	16.524	0.31713	16.524	16.363	16.68	0					14	6	3	0	0	0	0.035062	1	4747	4747		104.06	10.05	1	4160500			35424	4403	24375	24464	35862	35862					0.04507939983614051
SEDKKRPSL	9	Unmodified	_SEDKKRPSL_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.293701171875	2	530.293288	1058.57202	1.6443	0.00087197	-0.55601	-0.00029485	1.0883	0.00057713	530.2928966825139	16.541	0.3134	16.541	16.384	16.697	0					15	6	4	0	0	0	0.035062	1	4609	4609		104.06	21.752	1	2381600			35425	4403	24375	24464	35863	35863					0.04507939983614051
SEDLNKHVL	9	Unmodified	_SEDLNKHVL_					0	0	0		ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7799682617188	2	527.780013	1053.54547	0.10571	5.5789E-05	-1.1617	-0.00061314	-1.056	-0.00055735	527.7792503567887	24.611	0.17856	24.611	24.519	24.698	0					7	4	2	0	0	0	0.055856	1	8311	8311		93.195	16.349	1	2044900			35426	23146	24376	24465	35864	35864					0.02084251092287559
SEDPNQAKL	9	Unmodified	_SEDPNQAKL_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000534807.1_1_17:45673771-45679230:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2484130859375	2	501.248546	1000.48254	-0.044862	-2.2487E-05	-0.31101	-0.00015589	-0.35587	-0.00017838	501.2485161876584	21.97	0.19538	21.97	21.867	22.062	0					10	5	3	0	0	0	0.10915	1	6138	6138		77.318	23.966	1	115010			35427	4435	24377	24466	35865	35865					-0.017683146957665485
SEDPNQAKL	9	Unmodified	_SEDPNQAKL_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000534807.1_1_17:45673771-45679230:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.248291015625	2	501.248546	1000.48254	-0.11196	-5.6119E-05	-1.0757	-0.0005392	-1.1877	-0.00059531	501.24784142265565	22.285	0.50005	22.285	22.061	22.561	0					17	11	3	0	0	0	0.12834	1	7206	7206		72.879	19.943	1	505230			35428	4435	24377	24466	35866	35866					-0.017683146957665485
SEDPNQAKL	9	Unmodified	_SEDPNQAKL_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000534807.1_1_17:45673771-45679230:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2485046386719	2	501.248546	1000.48254	-0.58218	-0.00029182	0.30475	0.00015275	-0.27743	-0.00013906	501.2488019054879	22.145	0.21551	22.145	22.037	22.253	0					6	4	2	0	0	0	0.15163	1	7463	7463		67.494	10.773	1	165520			35429	4435	24377	24466	35867	35867					-0.017683146957665485
SEDPSHPSM	9	Unmodified	_SEDPSHPSM_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.6980895996094	2	493.697832	985.38111	-0.090716	-4.4786E-05	-0.25639	-0.00012658	-0.34711	-0.00017137	493.6978057974851	22.434	0.41432	22.434	22.19	22.605	0					26	12	3	0	0	0	0.35045	1	6286	6286		45.952	16.802	1	173230			35430	2680	24378	24467	35868	35868					-0.11216509389964813
SEDPSHPSM	9	Unmodified	_SEDPSHPSM_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.6976318359375	2	493.697832	985.38111	-1.2695	-0.00062676	0.90039	0.00044452	-0.36913	-0.00018224	493.6983875122827	22.496	0.49825	22.496	22.2	22.699	0					36	15	3	0	0	0	0.45358	1	6559	6559		37.159	6.6555	1	353160			35431	2680	24378	24467	35869	35869					-0.11216509389964813
SEDPSHPSM	9	Unmodified	_SEDPSHPSM_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.6976318359375	2	493.697832	985.38111	0.64262	0.00031726	-1.2629	-0.0006235	-0.6203	-0.00030624	493.6974088535736	22.657	0.60895	22.657	22.302	22.911	0					40	12	4	0	0	0	0.33044	1	7666	7666		47.657	5.2612	1	2159900			35432	2680	24378	24467	35870	35870					-0.11216509389964813
SEDRARASLVL	11	Unmodified	_SEDRARASLVL_					0	0	0		ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL;ENST00000545700.5_1_12:6562264-6567817:+|nuORF;nc|ENSG00000139192|Q9BX59-5|TAPBPL;nc|ENSG00000139192|Q9BX59-4|TAPBPL;nc|ENSG00000139192|Q9BX59-6|TAPBPL;nc|ENSG00000139192|Q9BX59-3|TAPBPL	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.8360595703125	2	608.835851	1215.65715	0.82539	0.00050253	-0.8162	-0.00049693	0.0091888	5.5944E-06	608.8354539534452	29.791	0.35833	29.791	29.65	30.008	0					10	7	2	0	0	0	0.34891	1	11069	11069		26.063	0	1	380360			35433	4312	24379	24468	35871	35871					0.05794685449427561
SEDSHLESL	9	Unmodified	_SEDSHLESL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7307434082031	2	508.730186	1015.44582	-0.10228	-5.2033E-05	1.6108	0.00081948	1.5086	0.00076745	508.73039303486513	29.862	0.24122	29.862	29.686	29.928	0					17	10	3	0	0	0	0.17854	1	9436	9436		64.207	21.811	1	176180			35434	1224	24380	24469	35872	35872					-0.06128611312328758
SEDSHLESL	9	Unmodified	_SEDSHLESL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.73004150390625	2	508.730186	1015.44582	-0.02202	-1.1202E-05	0.40896	0.00020805	0.38694	0.00019685	508.7302019421624	30.122	0.32434	30.122	29.999	30.324	0					18	8	4	0	0	0	0.027316	1	10816	10816		111.65	29.343	1	1238100			35435	1224	24380	24469	35873	35873					-0.06128611312328758
SEDSHLESL	9	Unmodified	_SEDSHLESL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7304382324219	2	508.730186	1015.44582	2.9848	0.0015185	-2.5676	-0.0013062	0.41721	0.00021225	508.7287318790761	30.073	0.31353	30.073	29.963	30.277	0					11	6	3	0	0	0	0.020824	1	11078	11078		120.62	15.352	1	896500			35436	1224	24380	24469	35874	35874					-0.06128611312328758
SEDSKRQIN	9	Unmodified	_SEDSKRQIN_					0	0	0		MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant;MSH3|p.N1020Ifs*40|1|0.46|ENSG00000113318|chr5:80864865-80864865|A/-|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3;MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant;MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant	MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant	MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7696533203125	2	538.770177	1075.5258	0.85036	0.00045815	-1.6937	-0.00091254	-0.84338	-0.00045439	538.7691949434029	29.606	0.07848	29.606	29.542	29.62	0					4	2	2	0	0	0	0.41113	1	9359	9359		40.778	5.6261	1	45170			35437	2793	24381	24470	35875	35875					-0.008941249184545086
SEEGGHVVL	9	Unmodified	_SEEGGHVVL_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7317199707031	2	463.732532	925.45051	-0.44216	-0.00020504	-0.2707	-0.00012553	-0.71286	-0.00033058	463.7325277434769	26.747	0.12345	26.747	26.649	26.772	0					6	4	2	0	0	0	0.16524	1	8161	8161		65.803	11.027	1	59280			35438	1262	24382	24471	35876	35876					-0.015196823788983238
SEEGGHVVL	9	Unmodified	_SEEGGHVVL_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.7323303222656	2	463.732532	925.45051	-0.70204	-0.00032556	0.11862	5.5007E-05	-0.58343	-0.00027055	463.7326875092021	27.007	0.25507	27.007	26.914	27.169	0					10	6	2	0	0	0	0.043797	1	9392	9392		97.473	12.113	1	333590			35439	1262	24382	24471	35877	35877					-0.015196823788983238
SEEGGHVVL	9	Unmodified	_SEEGGHVVL_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.73211669921875	2	463.732532	925.45051	0.69955	0.00032441	-1.4512	-0.00067296	-0.75163	-0.00034856	463.7318023045997	27.014	0.20756	27.014	26.911	27.118	0					11	4	3	0	0	0	0.11118	1	9750	9750		76.847	13.54	1	515080			35440	1262	24382	24471	35878	35878					-0.015196823788983238
SEEGGHVVL	9	Unmodified	_SEEGGHVVL_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7322082519531	2	463.732532	925.45051	0.74779	0.00034677	-2.1368	-0.00099092	-1.3891	-0.00064415	463.7311698366435	26.944	0.41642	26.944	26.637	27.053	0					11	8	2	0	0	0	0.068692	1	9599	9599		88.643	14.668	1	346550			35441	1262	24382	24471	35879	35879					-0.015196823788983238
SEEGLRNAL	9	Unmodified	_SEEGLRNAL_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.75653076171875	2	494.756538	987.498523	0.069593	3.4432E-05	0.64898	0.00032109	0.71857	0.00035552	494.75682256948414	29.653	0.19994	29.653	29.539	29.739	0					10	5	3	0	0	0	0.13267	1	9997	9997		71.877	15.156	1	127770			35442	3132	24383	24472	35880	35880					0.004273915411431517
SEEGLRNAL	9	Unmodified	_SEEGLRNAL_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7563171386719	2	494.756538	987.498523	0.91621	0.0004533	-1.4883	-0.00073633	-0.57205	-0.00028303	494.7558562174907	29.79	0.61517	29.79	29.532	30.147	0					22	12	3	0	0	0	0.078509	1	10965	10965		85.161	27.35	1	860650			35443	3132	24383	24472	35881	35881					0.004273915411431517
SEEMPCGF	8	Unmodified	_SEEMPCGF_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.1675109863281	2	450.167321	898.32009	-0.43292	-0.00019489	-0.48961	-0.0002204	-0.92253	-0.00041529	450.16701928639384	45.751	0.12084	45.751	45.705	45.826	0					11	7	2	0	0	0	0.74117	1	14185	14185		28.254	0	1	37938	+		35444	13192	24384	24473	35882	35882					-0.13313737693749772
SEENKVLVT	9	Unmodified	_SEENKVLVT_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.1854553222656	3	340.185356	1017.53424	3.0199	0.0010273	-0.13604	-4.6278E-05	2.8839	0.00098104	340.18516551795767	20.07	0.61813	20.07	19.91	20.528	0					19	12	3	0	0	0	0.37197	1	6323	6323		51.193	9.7661	1	1216500	+	+	35445	12578	24385	24474	35883	35883					0.026174289981554466
SEERFRPSL	9	Unmodified	_SEERFRPSL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.7913818359375	2	560.790912	1119.56727	1.7926	0.0010053	-1.2643	-0.00070902	0.52824	0.00029623	560.7901562436654	28.431	0.72671	28.431	28.291	29.018	0					49	18	5	0	0	0	0.13726	1	10028	10028		45.972	10.354	1	6251500			35446	1209	24386	24475	35884	35884					0.012270558408772558
SEERFRPSL	9	Unmodified	_SEERFRPSL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7913208007812	2	560.790912	1119.56727	0.65834	0.00036919	-0.040474	-2.2697E-05	0.61786	0.00034649	560.7908511536948	28.441	0.51456	28.441	28.331	28.846	0					25	10	4	0	0	0	0.13726	1	10405	10405		45.972	10.354	1	1994500			35447	1209	24386	24475	35885	35885					0.012270558408772558
SEERFRPSL	9	Unmodified	_SEERFRPSL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7913208007812	2	560.790912	1119.56727	1.5539	0.00087139	-0.23125	-0.00012968	1.3226	0.0007417	560.7907808608585	28.222	0.39034	28.222	28.115	28.506	0					17	9	4	0	0	0	0.11411	1	9346	9346		51.193	34.72	1	504250			35448	1209	24386	24475	35886	35886					0.012270558408772558
SEERFRPSL	9	Unmodified	_SEERFRPSL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7913208007812	2	560.790912	1119.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.221	1	28.221	27.721	28.721	0								0	0	0	0.095784	1	9338	9338		47.657	25.697	1				35449	1209	24386	24475	35887	35887					0.012270558408772558
SEERFRPSL	9	Unmodified	_SEERFRPSL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7911987304688	2	560.790912	1119.56727	1.2806	0.00071813	-1.0505	-0.0005891	0.23008	0.00012903	560.7902524927222	28.367	1.0123	28.367	28.211	29.224	0					54	20	4	0	0	0	0.047855	1	10255	10255		69.628	2.134	1	9854000			35450	1209	24386	24475	35888	35888					0.012270558408772558
SEERVQVAL	9	Unmodified	_SEERVQVAL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.780517578125	2	515.780013	1029.54547	1.5127	0.00078022	-0.90814	-0.0004684	0.60457	0.00031183	515.7796240316684	32.412	0.26959	32.412	32.304	32.573	0					13	5	3	0	0	0	0.25761	1	12230	12230		54.722	5.1863	1	1062500			35451	7426	24387	24476	35889	35889					0.03188251092274186
SEEVVSREV	9	Unmodified	_SEEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2617797851562	2	517.261653	1032.50875	0.36097	0.00018672	-0.14057	-7.2709E-05	0.2204	0.00011401	517.2615914133073	24.856	0.20441	24.856	24.783	24.987	0					12	6	2	0	0	0	0.017421	1	7403	7403		126.24	41.327	1	385570			35452	5385	24388	24477	35890	35890					-0.00620045524260604
SEEVVSREV	9	Unmodified	_SEEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.26171875	2	517.261653	1032.50875	0.0441	2.2811E-05	-0.0728	-3.7657E-05	-0.028699	-1.4845E-05	517.2615666252217	25.141	0.28683	25.141	25.046	25.333	0					15	6	3	0	0	0	0.02429	1	8560	8560		114.89	48.465	1	2557500			35453	5385	24388	24477	35891	35891					-0.00620045524260604
SEEVVSREV	9	Unmodified	_SEEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2616577148438	2	517.261653	1032.50875	0.029849	1.544E-05	0.2669	0.00013806	0.29675	0.0001535	517.2617184903958	24.905	0.19841	24.905	24.806	25.004	0					15	6	3	0	0	0	0.02429	1	7672	7672		114.89	58.174	1	765700			35454	5385	24388	24477	35892	35892					-0.00620045524260604
SEEVVSREV	9	Unmodified	_SEEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.261962890625	2	517.261653	1032.50875	0.87229	0.0004512	-0.33586	-0.00017373	0.53643	0.00027747	517.2614765774339	24.96	0.23841	24.96	24.86	25.098	0					11	5	3	0	0	0	0.054723	1	7875	7875		93.598	37.164	1	425170			35455	5385	24388	24477	35893	35893					-0.00620045524260604
SEFATTNQI	9	Unmodified	_SEFATTNQI_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7430725097656	2	505.743096	1009.47164	-0.74571	-0.00037714	1.5272	0.00077238	0.7815	0.00039524	505.74380476934454	35.896	0.11414	35.896	35.837	35.952	0					9	5	2	0	0	0	0.12834	1	12150	12150		72.879	22.855	1	75125			35456	4897	24389	24478	35894	35894					-0.03271717070060731
SEFATTNQI	9	Unmodified	_SEFATTNQI_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7433166503906	2	505.743096	1009.47164	1.0684	0.00054031	-0.95921	-0.00048511	0.10915	5.5203E-05	505.7425966524787	36.126	0.27248	36.126	36.019	36.292	0					13	8	2	0	0	0	0.026538	1	14034	14034		112.41	30.106	1	346940			35457	4897	24389	24478	35895	35895					-0.03271717070060731
SEFGAKSK	8	Unmodified	_SEFGAKSK_					0	0	0		PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant;PLCB1|p.N466Ifs*79|1|0.15|ENSG00000182621|chr20:8717728-8717728|A/-|frameshift_variant;nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant	PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.2242736816406	2	427.224342	852.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.934	1	18.934	18.434	19.434	0								0	0	0	1.7419	1	4803	4803		56.721	8.8055	1				35458	6907	24390	24479	35896	35896					0.0020123645500689236
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;CTNNA1|p.L897I|1|0.68|ENSG00000044115|chr5:138934057-138934057|C/A|missense_variant	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2422485351562	2	514.241875	1026.4692	1.2681	0.0006521	-0.78594	-0.00040416	0.48214	0.00024793	514.241543183318	37.271	0.25783	37.271	37.202	37.459	0					27	14	3	0	0	0	0.12834	1	12209	12209		72.879	9.573	1	244070			35459	1209	24391	24480	35897	35897					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;CTNNA1|p.L897I|1|0.68|ENSG00000044115|chr5:138934057-138934057|C/A|missense_variant	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2418823242188	2	514.241875	1026.4692	1.1492	0.00059095	-1.1643	-0.00059872	-0.015108	-7.7691E-06	514.2414132209601	37.604	0.2735	37.604	37.525	37.798	0					25	8	4	0	0	0	0.011389	1	14258	14258		138.06	49.42	1	1536600			35460	1209	24391	24480	35898	35898					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;CTNNA1|p.L897I|1|0.68|ENSG00000044115|chr5:138934057-138934057|C/A|missense_variant	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2418823242188	2	514.241875	1026.4692	-0.18204	-9.3612E-05	0.23669	0.00012172	0.054654	2.8105E-05	514.2421924555566	37.378	0.18196	37.378	37.302	37.484	0					27	10	4	0	0	0	0.020674	1	12629	12629		120.87	41.417	1	295300			35461	1209	24391	24480	35899	35899					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;CTNNA1|p.L897I|1|0.68|ENSG00000044115|chr5:138934057-138934057|C/A|missense_variant	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.241943359375	2	514.241875	1026.4692	0.62498	0.00032139	-0.25276	-0.00012998	0.37222	0.00019141	514.241940919269	37.377	0.19006	37.377	37.267	37.457	0					23	9	4	0	0	0	0.063171	1	13366	13366		90.601	19.305	1	260950			35462	1209	24391	24480	35900	35900					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;CTNNA1|p.L897I|1|0.68|ENSG00000044115|chr5:138934057-138934057|C/A|missense_variant	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2420043945312	2	514.241875	1026.4692	0.11907	6.1231E-05	-0.064092	-3.2959E-05	0.054978	2.8272E-05	514.2417113217083	37.527	0.30762	37.527	37.417	37.725	0					11	6	3	0	0	0	0.015496	1	14666	14666		129.42	24.153	1	318200			35463	1209	24391	24480	35901	35901					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;CTNNA1|p.L897I|1|0.68|ENSG00000044115|chr5:138934057-138934057|C/A|missense_variant	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.241943359375	2	514.241875	1026.4692	1.4744	0.00075819	-1.2641	-0.00065004	0.2103	0.00010814	514.2413526538411	37.51	0.45255	37.51	37.4	37.852	0					24	9	4	0	0	0	0.019258	1	14658	14658		123.21	31.017	1	3058400			35464	1209	24391	24480	35902	35902					-0.042978887993513126
SEFKGDLETL	10	Unmodified	_SEFKGDLETL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant;CSDE1|p.D560Gfs*6|1|0.3|ENSG00000009307|chr1:114725295-114725296|-/C|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7852172851562	2	569.784961	1137.55537	3.4344	0.0019569	-3.4581	-0.0019704	-0.023673	-1.3488E-05	569.7817949231779	39.127	0.61301	39.127	38.763	39.376	0					26	13	3	0	0	0	0.15477	1	15438	15438		85.862	0.94631	1	335150			35465	1024	24392	24481	35903	35903					-0.00790605692986901
SEFKNITV	8	Unmodified	_SEFKNITV_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.25335693359375	2	469.2531	936.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.819	1	33.819	33.319	34.319	0								0	0	0	1.7419	1	12543	12543		79.713	5.4575	1				35466	4594	24393	24482	35904	35904					0.020860786605680914
SEFKNITV	8	Unmodified	_SEFKNITV_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2533264160156	2	469.2531	936.491647	2.5741	0.0012079	-4.3054	-0.0020203	-1.7312	-0.00081238	469.25158215771035	33.792	0.32367	33.792	33.616	33.94	0					15	7	3	0	0	0	0.57171	1	12877	12877		52.937	1.744	1	606670			35467	4594	24393	24482	35905	35905					0.020860786605680914
SEFKSVLL	8	Unmodified	_SEFKSVLL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.76556396484375	2	461.765843	921.517133	0.72205	0.00033342	-1.2987	-0.0005997	-0.57667	-0.00026629	461.76511356741736	41.167	0.20611	41.167	41.079	41.285	0					14	8	3	0	0	0	0.3961	1	16195	16195		71.296	0	1	196290			35468	2578	24394	24483	35906	35906					0.053235531830068794
SEFLKEEKL	9	Unmodified	_SEFLKEEKL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.8728332519531	3	374.87289	1121.59684	0.79597	0.00029839	-0.75595	-0.00028339	0.040023	1.5004E-05	374.8725463987952	31.455	0.25275	31.455	31.331	31.584	0					12	6	3	0	0	0	0.47038	1	11446	11446		42.864	7.246	1	364360			35469	1841	24395	24484	35907	35907					0.04090575066334168
SEFNIKSL	8	Unmodified	_SEFNIKSL_					0	0	0			REV__MSH2|p.M83I|1|0.33|ENSG00000095002|chr2:47408438-47408438|G/T|missense_variant	REV__MSH2|p.M83I|1|0.33|ENSG00000095002|chr2:47408438-47408438|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2526550292969	2	469.2531	936.491647	-2.2074	-0.0010358	-0.79062	-0.000371	-2.998	-0.0014068	469.2538151125501	33.597	0.15848	33.597	33.521	33.679	0					9	4	3	0	0	0	0.65148	1	11799	11799		40.778	1.5253	1	128850	+		35470	20895	24396	24485	35908	35908					0.0208607866057946
SEFPAARL	8	Unmodified	_SEFPAARL_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.739990234375	2	445.74016	889.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.186	1	35.186	34.686	35.686	0								0	0	0	1.7419	1	13175	13175		31.955	1.4512	1				35471	292	24397	24486	35909	35909					0.016612292089462244
SEFPAARL	8	Unmodified	_SEFPAARL_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.73974609375	2	445.74016	889.465767	-0.17252	-7.6898E-05	-0.046445	-2.0702E-05	-0.21896	-9.76E-05	445.7400973346876	35.193	0.16069	35.193	35.111	35.271	0					7	4	2	0	0	0	0.64144	1	13612	13612		42.396	7.1954	1	102630			35472	292	24397	24486	35910	35910					0.016612292089462244
SEFPAARL	8	Unmodified	_SEFPAARL_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.739990234375	2	445.74016	889.465767	-0.4522	-0.00020156	-0.021923	-9.7721E-06	-0.47413	-0.00021134	445.7402695398133	35.089	0.31485	35.089	34.981	35.296	0					12	6	3	0	0	0	0.61938	1	13526	13526		45.952	45.952	1	213460			35473	292	24397	24486	35911	35911					0.016612292089462244
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.76849365234375	2	481.768917	961.523281	0.54884	0.00026441	-0.8585	-0.0004136	-0.30966	-0.00014918	481.7683862929382	40.453	0.39614	40.453	40.334	40.73	0					32	16	3	0	0	0	0.28444	1	15404	15404		87.696	18.91	1	409510			35474	6541	24398	24487	35912	35912					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.76812744140625	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.215	1	40.215	39.715	40.715	0								0	0	0	1.7419	1	13474	13474		35.618	2.1027	1				35475	6541	24398	24487	35913	35913					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.76849365234375	2	481.768917	961.523281	-0.10464	-5.0414E-05	-0.32066	-0.00015448	-0.4253	-0.0002049	481.76879987782013	40.431	0.21077	40.431	40.322	40.533	0					15	8	3	0	0	0	0.61925	1	15928	15928		45.972	11.8	1	118720			35476	6541	24398	24487	35914	35914					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7690124511719	2	481.768917	961.523281	0.68942	0.00033214	-0.032644	-1.5727E-05	0.65678	0.00031642	481.7687861996433	40.416	0.35513	40.416	40.295	40.65	0					28	14	3	0	0	0	0.32597	1	15923	15923		79.713	17.605	1	319540			35477	6541	24398	24487	35915	35915					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7699890136719	2	481.768917	961.523281	0.13541	6.5236E-05	0.96441	0.00046462	1.0998	0.00052986	481.7692872529079	40.235	0.1641	40.235	40.123	40.287	0					11	8	2	0	0	0	0.65148	1	14295	14295		40.778	8.8233	1	39601			35478	6541	24398	24487	35916	35916					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7684326171875	2	481.768917	961.523281	-0.28822	-0.00013886	-0.1217	-5.8633E-05	-0.40993	-0.00019749	481.76870831349095	40.194	0.26069	40.194	40.095	40.356	0					18	13	2	0	0	0	0.66095	1	14286	14286		39.253	0.44669	1	108300			35479	6541	24398	24487	35917	35917					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.768798828125	2	481.768917	961.523281	-0.62225	-0.00029978	0.16396	7.8991E-05	-0.45829	-0.00022079	481.7689417207763	40.367	0.33749	40.367	40.229	40.566	0					16	7	3	0	0	0	0.44767	1	16007	16007		65.465	17.808	1	745600			35480	6541	24398	24487	35918	35918					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7686767578125	2	481.768917	961.523281	0.90551	0.00043625	-0.34744	-0.00016739	0.55807	0.00026886	481.7686091708818	40.399	0.45338	40.399	40.217	40.67	0					21	10	3	0	0	0	0.39125	1	16024	16024		71.877	25.905	1	928630			35481	6541	24398	24487	35919	35919					0.04098071414523474
SEFQKAVKL	9	Unmodified	_SEFQKAVKL_					0	0	0		nc|ENSG00000134109|Q92611-2|EDEM1;ENSG00000134109|ENST00000256497|EDEM1;EDEM1|p.P273Lfs*15|1|0.38|ENSG00000134109|chr3:5201882-5201882|C/-|frameshift_variant	nc|ENSG00000134109|Q92611-2|EDEM1	nc|ENSG00000134109|Q92611-2|EDEM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.3030395507812	2	525.303124	1048.5917	0.15018	7.8892E-05	-0.065258	-3.428E-05	0.084926	4.4612E-05	525.3032186087871	28.507	0.21444	28.507	28.399	28.613	0					11	4	3	0	0	0	0.07136	1	10462	10462		87.696	29.467	1	282600			35482	3891	24399	24488	35920	35920					0.06934315994362805
SEFSFSKL	8	Unmodified	_SEFSFSKL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7394714355469	2	472.739825	943.465098	0.62801	0.00029689	-0.79877	-0.00037761	-0.17076	-8.0723E-05	472.7393143919826	42.437	0.15143	42.437	42.335	42.486	0					6	4	2	0	0	0	0.53424	1	16937	16937		56.721	19.562	1	70454			35483	2268	24400	24489	35921	35921					-0.00889610230751714
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.3112182617188	2	568.310949	1134.60735	0.13741	7.8091E-05	-0.21001	-0.00011935	-0.072596	-4.1257E-05	568.3111432860046	37.357	0.35315	37.357	37.246	37.599	0					22	10	4	0	0	0	0.0792	1	14145	14145		84.916	26.134	1	477270			35484	4222	24401	24490	35922	35922					0.04542602511401128
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.3112182617188	2	568.310949	1134.60735	1.9602	0.001114	-4.131	-0.0023477	-2.1707	-0.0012337	568.3102690781337	37.348	0.2722	37.348	37.226	37.498	0					18	8	3	0	0	0	0.25716	1	14593	14593		54.776	15.523	1	115260			35485	4222	24401	24490	35923	35923					0.04542602511401128
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.311279296875	2	568.310949	1134.60735	0.24307	0.00013814	0.5709	0.00032445	0.81397	0.00046259	568.3110615672012	37.334	0.31059	37.334	37.213	37.524	0					20	9	3	0	0	0	0.33044	1	14571	14571		47.657	8.8512	1	196530			35486	4222	24401	24490	35924	35924					0.04542602511401128
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.3111572265625	2	568.310949	1134.60735	3.4648	0.0019691	-3.9254	-0.0022308	-0.46058	-0.00026175	568.3092765976497	37.248	0.50512	37.248	37.137	37.642	0					30	10	4	0	0	0	0.098791	1	14554	14554		79.713	33.74	1	1459500			35487	4222	24401	24490	35925	35925					0.04542602511401128
SEGFLASFLLL	11	Unmodified	_SEGFLASFLLL_					0	0	0		ENST00000394670.8_1_17:30677220-30677292:+|nuORF	ENST00000394670.8_1_17:30677220-30677292:+|nuORF	ENST00000394670.8_1_17:30677220-30677292:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.556884765625	3	399.556902	1195.64888	0.42806	0.00017103	-0.45489	-0.00018176	-0.026837	-1.0723E-05	399.5568980993558	24.25	0.61423	24.25	24.062	24.676	0					36	12	5	0	0	0	0.66915	1	8315	8315		30.569	0.25114	1	954250			35488	9179	24402	24491	35926	35926					0.05887738480100779
SEGGTFRLV	9	Unmodified	_SEGGTFRLV_					0	0	0			REV__ENST00000519759.1_1_5:156649807-156665140:+|nuORF	REV__ENST00000519759.1_1_5:156649807-156665140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2564392089844	2	483.256174	964.497795	0.059113	2.8567E-05	-0.82342	-0.00039792	-0.76431	-0.00036936	483.2560245974153	29.306	0.10854	29.306	29.231	29.339	0					8	4	2	0	0	0	0.4966	1	9234	9234		32.812	4.9302	1	61202	+		35489	19091	24403	24492	35927	35927					0.014125968920893683
SEGIKHVL	8	Unmodified	_SEGIKHVL_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.7555847167969	2	441.75581	881.497067	0.29831	0.00013178	-0.3936	-0.00017387	-0.095287	-4.2094E-05	441.75553266986395	22.882	0.14078	22.882	22.812	22.953	0					6	4	2	0	0	0	0.39542	1	6549	6549		71.378	11.084	1	86583			35490	5800	24404	24493	35928	35928					0.05157802243047627
SEGIKHVL	8	Unmodified	_SEGIKHVL_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.7559814453125	2	441.75581	881.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.266	1	23.266	22.766	23.766	0								0	0	0	1.7419	1	7678	7678		88.643	28.349	1				35491	5800	24404	24493	35929	35929					0.05157802243047627
SEGIKHVL	8	Unmodified	_SEGIKHVL_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.7562561035156	2	441.75581	881.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.001	1	23.001	22.501	23.501	0								0	0	0	1.7419	1	6850	6850		55.504	14.932	1				35492	5800	24404	24493	35930	35930					0.05157802243047627
SEGIKHVL	8	Unmodified	_SEGIKHVL_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.7554626464844	2	441.75581	881.497067	-0.2919	-0.00012895	-0.26642	-0.00011769	-0.55832	-0.00024664	441.75566372706663	23.171	0.36747	23.171	23.061	23.429	0					12	7	3	0	0	0	0.44433	1	7931	7931		65.803	7.9919	1	755620			35493	5800	24404	24493	35931	35931					0.05157802243047627
SEGIKHVL	8	Unmodified	_SEGIKHVL_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.7559814453125	2	441.75581	881.497067	0.38198	0.00016874	0.25375	0.0001121	0.63573	0.00028084	441.75573266790036	23.001	0.14086	23.001	22.923	23.064	0					5	3	2	0	0	0	0.3961	1	6962	6962		71.296	5.4925	1	91955			35494	5800	24404	24493	35932	35932					0.05157802243047627
SEGIKHVL	8	Unmodified	_SEGIKHVL_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.755615234375	2	441.75581	881.497067	-0.52263	-0.00023088	-0.16488	-7.2836E-05	-0.68751	-0.00030371	441.7558585559116	23.15	0.36367	23.15	23.038	23.401	0					16	7	4	0	0	0	0.24425	1	7793	7793		111.65	28.361	1	928830			35495	5800	24404	24493	35933	35933					0.05157802243047627
SEGIRVQAL	9	Unmodified	_SEGIRVQAL_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.77789306640625	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.744	1	33.744	33.244	34.244	0								0	0	0	0.04624	1	12939	12939		87.696	5.4559	1				35496	7578	24405	24494	35934	35934					0.053085723004642205
SEGKAYSL	8	Unmodified	_SEGKAYSL_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1;RCC1|p.R320W|1|0.47|ENSG00000180198|chr1:28536767-28536767|C/T|missense_variant	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.71612548828125	2	427.71635	853.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.858	1	24.858	24.358	25.358	0								0	0	0	1.7419	1	7401	7401		66.429	7.6473	1				35497	6795	24406	24495	35935	35935					-0.014424697819208632
SEGKAYSL	8	Unmodified	_SEGKAYSL_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1;RCC1|p.R320W|1|0.47|ENSG00000180198|chr1:28536767-28536767|C/T|missense_variant	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.71624755859375	2	427.71635	853.418148	0.27409	0.00011723	-0.63953	-0.00027354	-0.36544	-0.00015631	427.7160005060624	25.124	0.24498	25.124	25.03	25.275	0					11	5	3	0	0	0	0.34592	1	8534	8534		77.318	3.0625	1	636140			35498	6795	24406	24495	35936	35936					-0.014424697819208632
SEGKAYSL	8	Unmodified	_SEGKAYSL_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1;RCC1|p.R320W|1|0.47|ENSG00000180198|chr1:28536767-28536767|C/T|missense_variant	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.716064453125	2	427.71635	853.418148	-0.51247	-0.00021919	0.0078762	3.3688E-06	-0.50459	-0.00021582	427.71634248435464	25.115	0.36768	25.115	25.008	25.375	0					12	7	3	0	0	0	0.39125	1	8861	8861		71.877	8.5712	1	691660			35499	6795	24406	24495	35937	35937					-0.014424697819208632
SEGKAYSL	8	Unmodified	_SEGKAYSL_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1;RCC1|p.R320W|1|0.47|ENSG00000180198|chr1:28536767-28536767|C/T|missense_variant	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.7160949707031	2	427.71635	853.418148	-0.41232	-0.00017635	-0.17709	-7.5745E-05	-0.58941	-0.0002521	427.7162502541071	25.02	0.46671	25.02	24.914	25.381	0					15	9	3	0	0	0	0.28444	1	8718	8718		87.696	5.4559	1	870020			35500	6795	24406	24495	35938	35938					-0.014424697819208632
SEGKCFSV	8	Unmodified	_SEGKCFSV_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.69732666015625	2	428.697103	855.379654	0.25601	0.00010975	0.074232	3.1823E-05	0.33024	0.00014157	428.6970765205834	28.545	0.33919	28.545	28.419	28.758	0					14	8	2	0	0	0	0.28444	1	10090	10090		87.696	34.345	1	147970			35501	1615	24407	24496	35939	35939					-0.05382098688073711
SEGKCFSV	8	Unmodified	_SEGKCFSV_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.69720458984375	2	428.697103	855.379654	-0.52726	-0.00022603	-0.034562	-1.4817E-05	-0.56182	-0.00024085	428.6970949008085	28.541	0.55867	28.541	28.432	28.991	0					19	11	2	0	0	0	0.34592	1	10459	10459		77.318	21.813	1	246090			35502	1615	24407	24496	35940	35940					-0.05382098688073711
SEGKCFSVL	9	Carbamidomethyl (C)	_SEGKC(Carbamidomethyl (C))FSVL_	SEGKC(1)FSVL		SEGKC(100)FSVL		0	1	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7499389648438	2	513.749867	1025.48518	0.017414	8.9464E-06	-0.16533	-8.4936E-05	-0.14791	-7.599E-05	513.7498662738551	35.493	0.49534	35.493	35.295	35.79	0					34	13	4	0	0	0	0.035062	1	13301	13301		104.06	21.752	1	1010900			35503	1615	24408	24497	35941	35941	67				-0.026541825624462945
SEGKCFSVL	9	Carbamidomethyl (C)	_SEGKC(Carbamidomethyl (C))FSVL_	SEGKC(1)FSVL		SEGKC(62)FSVL		0	1	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7499389648438	2	513.749867	1025.48518	1.3259	0.00068116	-2.1523	-0.0011058	-0.82646	-0.00042459	513.7492512062042	35.496	0.33346	35.496	35.382	35.716	0					18	9	3	0	0	0	0.19605	1	13749	13749		62.107	8.756	1	770680			35504	1615	24408	24497	35942	35942	67				-0.026541825624462945
SEGKCFSVL	9	Unmodified	_SEGKCFSVL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.23883056640625	2	485.239135	968.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.108	1	38.108	37.608	38.608	0								0	0	0	0.18645	1	14938	14938		52.937	5.2794	1				35505	1615	24408	24498	35943	35943					-0.02177567591161278
SEGKLIYTL	9	Unmodified	_SEGKLIYTL_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2893676757812	2	512.289682	1022.56481	0.0045256	2.3184E-06	-0.09764	-5.002E-05	-0.093114	-4.7701E-05	512.289469633894	40.467	0.23595	40.467	40.301	40.537	0					12	9	2	0	0	0	0.27249	1	15411	15411		52.937	3.4952	1	84613			35506	10	24409	24499	35944	35944					0.05443207383189019
SEGNLVVREV	10	Unmodified	_SEGNLVVREV_					0	0	0		ENSG00000127831|ENST00000248444|VIL1;nc|ENSG00000127831|P09327-2|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2989501953125	2	551.29857	1100.58259	1.6433	0.00090597	-2.2825	-0.0012583	-0.63915	-0.00035236	551.2970474126914	32.321	0.29036	32.321	32.126	32.416	0					12	6	3	0	0	0	0.0068379	1	12267	12267		159.34	52.653	1	380840			35507	3517	24410	24500	35945	35945					0.03631922638055585
SEGPHHVAL	9	Unmodified	_SEGPHHVAL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000475899.1_1_3:193355061-193361921:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7412109375	2	473.740691	945.466829	3.6843	0.0017454	-3.2446	-0.0015371	0.43962	0.00020826	473.73904196276607	20.806	0.15536	20.806	20.699	20.854	0					9	5	2	0	0	0	0.25109	1	5865	5865		55.504	11.387	1	40848			35508	7618	24411	24501	35946	35946					-0.008085564221460118
SEGPHHVAL	9	Unmodified	_SEGPHHVAL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000475899.1_1_3:193355061-193361921:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7405090332031	2	473.740691	945.466829	-0.58773	-0.00027843	1.0117	0.00047929	0.42398	0.00020086	473.7409028613151	21	0.16691	21	20.943	21.11	0					6	3	2	0	0	0	0.14734	1	6800	6800		68.485	11.764	1	888490			35509	7618	24411	24501	35947	35947					-0.008085564221460118
SEGPKVVSV	9	Unmodified	_SEGPKVVSV_					0	0	0		ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2528076171875	2	451.2531	900.491647	0.65755	0.00029672	-3.6403	-0.0016427	-2.9827	-0.001346	451.25281152005215	26.73	1.1378	26.73	26.042	27.18	0					69	27	4	0	0	0	0.085655	1	9303	9303		82.75	10.873	1	2042500			35510	4544	24412	24502	35948	35948					0.03742078660570769
SEGPKVVSV	9	Unmodified	_SEGPKVVSV_					0	0	0		ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2528381347656	2	451.2531	900.491647	0.70411	0.00031773	-0.95608	-0.00043143	-0.25196	-0.0001137	451.25266256960543	26.774	1.5056	26.774	26.017	27.523	0					51	30	3	0	0	0	0.085655	1	9630	9630		82.75	15.257	1	2576100			35511	4544	24412	24502	35949	35949					0.03742078660570769
SEGPKVVSV	9	Unmodified	_SEGPKVVSV_					0	0	0		ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.25238037109375	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.692	1	26.692	26.192	27.192	0								0	0	0	0.29356	1	8632	8632		36.447	0	1				35512	4544	24412	24502	35950	35950					0.03742078660570769
SEGPKVVSV	9	Unmodified	_SEGPKVVSV_					0	0	0		ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2529296875	2	451.2531	900.491647	-2.6093	-0.0011774	2.5699	0.0011597	-0.039372	-1.7767E-05	451.25430664615664	26.59	0.2778	26.59	26.456	26.734	0					12	6	2	0	0	0	0.21263	1	8589	8589		60.118	8.7828	1	235200			35513	4544	24412	24502	35951	35951					0.03742078660570769
SEGPKVVSV	9	Unmodified	_SEGPKVVSV_					0	0	0		ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.25286865234375	2	451.2531	900.491647	0.87684	0.00039567	-2.347	-0.0010591	-1.4701	-0.0006634	451.2524420624943	26.683	0.96829	26.683	26.085	27.053	0					55	19	4	0	0	0	0.085655	1	9499	9499		82.75	11.455	1	2214000			35514	4544	24412	24502	35952	35952					0.03742078660570769
SEGPKVVSV	9	Unmodified	_SEGPKVVSV_					0	0	0		ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2529296875	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.753	1	26.753	26.253	27.253	0								0	0	0	0.095784	1	9489	9489		72.879	17.375	1				35515	4544	24412	24502	35953	35953					0.03742078660570769
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant;ZNF451|p.L304Dfs*12|1|0.07|ENSG00000112200|chr6:57141999-57142000|TT/-|frameshift_variant;nc|ENSG00000112200|Q9Y4E5-4|ZNF451;ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant	ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2817077636719	2	484.282192	966.549831	-1.2432	-0.00060204	0.29219	0.0001415	-0.95097	-0.00046054	484.2824612215905	35.8	0.21748	35.8	35.695	35.912	0					20	10	3	0	0	0	0.39215	1	12124	12124		42.396	9.5837	1	234640			35516	2720	24413	24503	35954	35954					0.06521760305861335
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant;ZNF451|p.L304Dfs*12|1|0.07|ENSG00000112200|chr6:57141999-57142000|TT/-|frameshift_variant;nc|ENSG00000112200|Q9Y4E5-4|ZNF451;ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant	ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.28192138671875	2	484.282192	966.549831	-0.26205	-0.00012691	-0.37551	-0.00018185	-0.63756	-0.00030876	484.2820905414614	35.81	0.24598	35.81	35.669	35.915	0					17	9	2	0	0	0	0.45358	1	12753	12753		37.159	10.466	1	173510			35517	2720	24413	24503	35955	35955					0.06521760305861335
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant;ZNF451|p.L304Dfs*12|1|0.07|ENSG00000112200|chr6:57141999-57142000|TT/-|frameshift_variant;nc|ENSG00000112200|Q9Y4E5-4|ZNF451;ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant	ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2817687988281	2	484.282192	966.549831	-2.9171	-0.0014127	1.5819	0.00076608	-1.3353	-0.00064664	484.28321139244025	35.804	0.22523	35.804	35.681	35.906	0					17	8	3	0	0	0	0.41113	1	12793	12793		40.778	11.629	1	190770			35518	2720	24413	24503	35956	35956					0.06521760305861335
SEGPPRPSGAP	11	Unmodified	_SEGPPRPSGAP_					0	0	0			REV__ENST00000381401.10_1_X:1511360-1511447:-|nuORF	REV__ENST00000381401.10_1_X:1511360-1511447:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2554931640625	2	526.261988	1050.50942	1.2036	0.00063343	-0.3928	-0.00020671	0.81084	0.00042671	526.2619201922932	24.304	0.43679	24.304	24.172	24.609	0					26	10	4	0	0	0	0.68382	1	7515	7515		29.17	10.846	1	1869400	+		35519	18785	24414	24504	35957	35957					-0.01381206084556652
SEGRPTKE	8	Unmodified	_SEGRPTKE_					0	0	0		FSTL5|p.T78Nfs*27|1|0.28|ENSG00000168843|chr4:161920580-161920581|-/T|frameshift_variant;FSTL5|p.Q123Tfs*9|1|0.17|ENSG00000168843|chr4:161920446-161920447|-/T|frameshift_variant;FSTL5|p.F429Lfs*10|1|0.35|ENSG00000168843|chr4:161538191-161538191|A/-|frameshift_variant;FSTL5|p.S401Kfs*44|1|0.04|ENSG00000168843|chr4:161538276-161538277|-/ATTATAACAAATAGATT|frameshift_variant;FSTL5|p.Y458Mfs*7|1|0.1|ENSG00000168843|chr4:161500102-161500102|A/-|frameshift_variant;FSTL5|p.V534Lfs*5|1|0.34|ENSG00000168843|chr4:161481029-161481029|T/-|frameshift_variant;FSTL5|p.K477Nfs*62|1|0.29|ENSG00000168843|chr4:161500043-161500043|C/-|frameshift_variant;nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5	FSTL5|p.T78Nfs*27|1|0.28|ENSG00000168843|chr4:161920580-161920581|-/T|frameshift_variant	FSTL5|p.T78Nfs*27|1|0.28|ENSG00000168843|chr4:161920580-161920581|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2296447753906	2	452.230156	902.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.373	1	15.373	14.873	15.873	0								0	0	0	1.7419	1	4190	4190		30.504	1.3541	1				35520	6129	24415	24505	35958	35958					-0.009365665216591879
SEGRTFEM	8	Unmodified	_SEGRTFEM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7105407714844	2	478.710742	955.406931	-1.4409	-0.00068976	0.67874	0.00032492	-0.76213	-0.00036484	478.7111803121934	29.06	0.32743	29.06	28.96	29.287	0					27	13	3	0	0	0	0.39125	1	9424	9424		71.877	16.373	1	584070			35521	4052	24416	24506	35959	35959					-0.07255615147687422
SEGRTFEM	8	Unmodified	_SEGRTFEM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7104797363281	2	478.710742	955.406931	0.65753	0.00031477	-1.5474	-0.00074075	-0.88986	-0.00042598	478.7101526918552	29.313	0.57147	29.313	29.195	29.767	0					30	12	4	0	0	0	0.50061	1	10835	10835		60.118	14.166	1	3053900			35522	4052	24416	24506	35960	35960					-0.07255615147687422
SEGRTFEM	8	Unmodified	_SEGRTFEM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.71044921875	2	478.710742	955.406931	-0.31966	-0.00015302	-0.4807	-0.00023011	-0.80035	-0.00038314	478.7106490484344	29.086	0.34333	29.086	28.967	29.31	0					19	9	3	0	0	0	0.32597	1	9746	9746		79.713	24.208	1	315010			35523	4052	24416	24506	35961	35961					-0.07255615147687422
SEGRTFEM	8	Unmodified	_SEGRTFEM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7103271484375	2	478.710742	955.406931	-2.9247	-0.0014001	1.8009	0.00086209	-1.1239	-0.00053802	478.7117997593976	29.083	0.30244	29.083	28.953	29.255	0					17	8	3	0	0	0	0.58686	1	9727	9727		51.193	3.2771	1	234010			35524	4052	24416	24506	35962	35962					-0.07255615147687422
SEGRTFEM	8	Unmodified	_SEGRTFEM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.71051025390625	2	478.710742	955.406931	0.88103	0.00042176	-1.6223	-0.00077661	-0.74126	-0.00035485	478.71002492025184	29.249	0.50596	29.249	29.143	29.648	0					24	10	3	0	0	0	0.5535	1	10702	10702		54.776	3.4409	1	2894000			35525	4052	24416	24506	35963	35963					-0.07255615147687422
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7334899902344	2	473.735074	945.455596	-1.5774	-0.00074729	1.0485	0.00049669	-0.52899	-0.0002506	473.73531064291893	38.348	0.15601	38.348	38.283	38.439	0					13	8	2	0	0	0	0.21116	1	12928	12928		60.294	24.676	1	63876			35526	1787	24417	24507	35964	35964					-0.019313785162808017
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7353515625	2	473.735074	945.455596	0.60274	0.00028554	-1.085	-0.00051398	-0.48221	-0.00022844	473.7346572073487	38.549	0.35538	38.549	38.445	38.801	0					26	12	3	0	0	0	0.018785	1	15117	15117		123.99	68.485	1	415710			35527	1787	24417	24507	35965	35965					-0.019313785162808017
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7351989746094	2	473.735074	945.455596	-2.5503	-0.0012082	1.8252	0.00086466	-0.72513	-0.00034352	473.73594151941916	38.328	0.12771	38.328	38.273	38.4	0					9	6	2	0	0	0	0.068692	1	13704	13704		88.643	39.201	1	83919			35528	1787	24417	24507	35966	35966					-0.019313785162808017
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7348327636719	2	473.735074	945.455596	0.67627	0.00032037	-1.1148	-0.0005281	-0.43848	-0.00020772	473.7346075874581	38.502	0.44233	38.502	38.35	38.792	0					17	9	3	0	0	0	0.013544	1	15145	15145		133.47	82.134	1	392260			35529	1787	24417	24507	35967	35967					-0.019313785162808017
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7351989746094	2	473.735074	945.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.494	1	38.494	37.994	38.994	0								0	0	0	0.0029406	1	15139	15139		180.49	76.438	1				35530	1787	24417	24507	35968	35968					-0.019313785162808017
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.7558288574219	2	460.756007	919.497461	-0.44194	-0.00020363	0.22876	0.0001054	-0.21318	-9.8223E-05	460.7560343403675	15.438	0.070642	15.438	15.397	15.468	0					7	3	3	0	0	0	0.046074	1	3356	3356		96.665	37.883	1	331680			35531	5257;7505	24418	24508	35969	35969					0.03449177172228701
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.755126953125	2	460.756007	919.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.768	1	15.768	15.268	16.268	0								0	0	0	0.27521	1	4143	4143		40.058	2.2467	1				35532	5257;7505	24418	24508	35970	35970					0.03449177172228701
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.75567626953125	2	460.756007	919.497461	-0.86694	-0.00039945	0.27162	0.00012515	-0.59532	-0.0002743	460.7561932892046	15.486	0.16518	15.486	15.421	15.587	0					9	5	3	0	0	0	0.00014666	1	3533	3533		191.45	56.684	1	306260			35533	5257;7505	24418	24508	35971	35971					0.03449177172228701
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.75567626953125	2	460.756007	919.497461	0.72249	0.00033289	-1.4064	-0.00064801	-0.68392	-0.00031512	460.75536752343476	15.728	0.2627	15.728	15.617	15.88	0					12	5	3	0	0	0	1.3064E-05	1	4347	4347		204.79	73.172	1	1828700			35534	5257;7505	24418	24508	35972	35972					0.03449177172228701
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.756103515625	2	460.756007	919.497461	-0.10639	-4.9021E-05	-0.38212	-0.00017606	-0.48851	-0.00022509	460.7559411417331	15.507	0.19308	15.507	15.41	15.603	0					10	6	3	0	0	0	0.017421	1	3488	3488		126.24	43.938	1	152630			35535	5257;7505	24418	24508	35973	35973					0.03449177172228701
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7558898925781	2	460.756007	919.497461	-2.5366	-0.0011688	2.0721	0.00095474	-0.46449	-0.00021402	460.75694284830684	15.492	0.14063	15.492	15.429	15.57	0					8	4	3	0	0	0	0.0071744	1	3482	3482		148.69	57.425	1	213840			35536	5257;7505	24418	24508	35974	35974					0.03449177172228701
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.755615234375	2	460.756007	919.497461	0.85381	0.0003934	-2.0221	-0.00093169	-1.1683	-0.0005383	460.7550019449464	15.69	0.46795	15.69	15.579	16.047	0					16	9	3	0	0	0	0.0021879	1	4202	4202		173.39	47.578	1	2477300			35537	5257;7505	24418	24508	35975	35975					0.03449177172228701
SEGTKAVTK	9	Unmodified	_SEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7558898925781	2	460.756007	919.497461	2.5443	0.0011723	-3.53	-0.0016265	-0.98572	-0.00045418	460.7542879284765	15.673	0.51823	15.673	15.613	16.131	0					16	10	3	0	0	0	0.001056	1	4195	4195		182.39	67.497	1	2003800			35538	5257;7505	24418	24508	35976	35976					0.03449177172228701
SEGVSKVIF	9	Unmodified	_SEGVSKVIF_					0	0	0		ADRA1D|p.F384S|1|0.29|ENSG00000171873|chr20:4222091-4222091|A/G|missense_variant	ADRA1D|p.F384S|1|0.29|ENSG00000171873|chr20:4222091-4222091|A/G|missense_variant	ADRA1D|p.F384S|1|0.29|ENSG00000171873|chr20:4222091-4222091|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2687072753906	2	483.26875	964.522947	0.88125	0.00042588	-1.1545	-0.00055795	-0.27328	-0.00013207	483.26825758828073	40.495	1.0286	40.495	40.342	41.371	0					36	21	2	0	0	0	0.4966	1	16343	16343		25.45	0	1	30856000			35539	84	24419	24509	35977	35977					0.03926651694666816
SEHAVNKQL	9	Unmodified	_SEHAVNKQL_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.27294921875	2	513.272355	1024.53016	1.2318	0.00063227	-0.045245	-2.3223E-05	1.1866	0.00060905	513.2724776610703	17.166	0.074038	17.166	17.109	17.183	0					4	2	2	0	0	0	0.063823	1	4042	4042		90.37	19.074	1	103600			35540	5918	24420	24510	35978	35978					0.01887384295105221
SEHAVNKQL	9	Unmodified	_SEHAVNKQL_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2724609375	2	513.272355	1024.53016	1.1029	0.00056607	-0.24768	-0.00012713	0.85519	0.00043894	513.271902722274	17.502	0.28611	17.502	17.421	17.708	0					13	7	3	0	0	0	0.016683	1	4943	4943		127.46	34.266	1	986200			35541	5918	24420	24510	35979	35979					0.01887384295105221
SEHAVNKQL	9	Unmodified	_SEHAVNKQL_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2721557617188	2	513.272355	1024.53016	-0.25281	-0.00012976	0.3055	0.0001568	0.052693	2.7046E-05	513.2722990940148	17.212	0.086012	17.212	17.168	17.254	0					4	2	2	0	0	0	0.17854	1	4280	4280		64.207	12.872	1	234210			35542	5918	24420	24510	35980	35980					0.01887384295105221
SEHAVNKQL	9	Unmodified	_SEHAVNKQL_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2721557617188	2	513.272355	1024.53016	1.2968	0.0006656	-1.5242	-0.00078231	-0.22739	-0.00011672	513.2714209561451	17.44	0.14929	17.44	17.351	17.5	0					7	3	3	0	0	0	0.07136	1	5191	5191		87.696	40.039	1	1437800			35543	5918	24420	24510	35981	35981					0.01887384295105221
SEHAVNKQL	9	Unmodified	_SEHAVNKQL_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2728271484375	2	513.272355	1024.53016	0.52336	0.00026863	0.53076	0.00027243	1.0541	0.00054105	513.2725804318047	17.232	0.115	17.232	17.166	17.281	0					5	3	2	0	0	0	0.1115	1	4263	4263		76.774	23.423	1	118820			35544	5918	24420	24510	35982	35982					0.01887384295105221
SEHAVNKQL	9	Unmodified	_SEHAVNKQL_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2722778320312	2	513.272355	1024.53016	1.4452	0.00074179	-1.6364	-0.00083994	-0.19122	-9.8146E-05	513.2714437087333	17.421	0.30562	17.421	17.326	17.632	0					9	6	2	0	0	0	0.032052	1	5035	5035		107.01	27.295	1	1858600			35545	5918	24420	24510	35983	35983					0.01887384295105221
SEHGEKLYL	9	Unmodified	_SEHGEKLYL_					0	0	0		ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2749633789062	2	538.274564	1074.53457	1.3676	0.00073616	-0.40798	-0.00021961	0.95964	0.00051655	538.2743304569722	27.381	0.16817	27.381	27.27	27.439	0					8	3	3	0	0	0	0.15163	1	9927	9927		67.494	31.875	1	134410			35546	1465	24421	24511	35984	35984					0.0002884871798869426
SEHGEKLYL	9	Unmodified	_SEHGEKLYL_					0	0	0		ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.274658203125	2	538.274564	1074.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.345	1	27.345	26.845	27.845	0								0	0	0	0.16453	1	9777	9777		56.434	20.816	1				35547	1465	24421	24511	35985	35985					0.0002884871798869426
SEHLHFVVK	9	Unmodified	_SEHLHFVVK_					0	0	0			REV__ENST00000475957.1_1_9:20414418-20622255:-|nuORF	REV__ENST00000475957.1_1_9:20414418-20622255:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.86968994140625	3	365.869703	1094.58728	0.75095	0.00027475	-0.94025	-0.00034401	-0.18929	-6.9256E-05	365.86931697251197	20.439	0.52431	20.439	20.339	20.863	0					24	11	3	0	0	0	0.18605	1	6334	6334		51.193	0	1	1998100	+		35548	16436	24422	24512	35986	35986					0.0437685157148735
SEHPDQAQAIL	11	Unmodified	_SEHPDQAQAIL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.7994995117188	2	604.798934	1207.58332	0.70928	0.00042897	-0.52871	-0.00031976	0.18057	0.00010921	604.7987889782577	31.222	0.27212	31.222	31.126	31.398	0					17	6	4	0	0	0	0.46959	1	11765	11765		46.457	4.0606	1	415550			35549	2899	24423	24513	35987	35987					-0.012172827129006691
SEHPSTSKM	9	Unmodified	_SEHPSTSKM_					0	0	0		HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2292785644531	2	502.229299	1002.44404	0.70697	0.00035506	-1.0089	-0.00050669	-0.30192	-0.00015163	502.22897850407713	15.244	0.17977	15.244	15.117	15.297	0					10	4	3	0	0	0	0.0406	1	3906	3906		98.629	32.2	1	558990			35550	2161	24424	24514	35988	35988					-0.05707943601930765
SEHPSTSKM	9	Unmodified	_SEHPSTSKM_					0	0	0		HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2288513183594	2	502.229299	1002.44404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.017	1	15.017	14.517	15.517	0								0	0	0	0.28666	1	3351	3351		37.812	0.78304	1				35551	2161	24424	24514	35989	35989					-0.05707943601930765
SEHPSTSKM	9	Unmodified	_SEHPSTSKM_					0	0	0		HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2291564941406	2	502.229299	1002.44404	0.051034	2.5631E-05	-0.16368	-8.2207E-05	-0.11265	-5.6577E-05	502.22923016118204	15.204	0.16331	15.204	15.096	15.259	0					7	3	3	0	0	0	0.10915	1	4120	4120		77.318	21.813	1	276520			35552	2161	24424	24514	35990	35990					-0.05707943601930765
SEHPSTSKM	9	Unmodified	_SEHPSTSKM_					0	0	0		HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2294921875	2	502.229299	1002.44404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.076	1	15.076	14.576	15.576	0								0	0	0	0.14033	1	3311	3311		62.107	21.329	1				35553	2161	24424	24514	35991	35991					-0.05707943601930765
SEHPSTSKM	9	Unmodified	_SEHPSTSKM_					0	0	0		HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2294616699219	2	502.229299	1002.44404	-0.52328	-0.00026281	0.46315	0.00023261	-0.060126	-3.0197E-05	502.22970473629204	15.17	0.16662	15.17	15.063	15.229	0					8	3	3	0	0	0	0.0406	1	3953	3953		98.629	37.657	1	326080			35554	2161	24424	24514	35992	35992					-0.05707943601930765
SEHRNLQNL	9	Unmodified	_SEHRNLQNL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.7871704101562	2	555.786161	1109.55777	0.11434	6.3546E-05	0.98813	0.00054919	1.1025	0.00061273	555.7868389105802	20.969	0.21049	20.969	20.891	21.102	0					10	6	3	0	0	0	0.078509	1	5953	5953		68.787	22.835	1	140860			35555	4438;1447	24425	24515	35993	35993					0.007372875553301128
SEHSHSTTL	9	Unmodified	_SEHSHSTTL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.73028564453125	2	499.73052	997.446488	2.9187	0.0014586	-2.5713	-0.001285	0.3474	0.00017361	499.729247765002	15.57	0.16877	15.57	15.513	15.681	0					7	3	3	0	0	0	0.099922	1	4150	4150		79.451	20.669	1	271130			35556	3791	24426	24516	35994	35994					-0.05233771872622128
SEHVKLEQL	9	Unmodified	_SEHVKLEQL_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.7962036132812	2	541.795663	1081.57677	1.7592	0.00095311	0.14365	7.7828E-05	1.9028	0.0010309	541.7957270855758	27.324	0.16179	27.324	27.249	27.411	0					13	6	3	0	0	0	0.10915	1	8405	8405		77.318	3.0625	1	106670			35557	196	24427	24517	35995	35995					0.03924824126374915
SEHVKLEQL	9	Unmodified	_SEHVKLEQL_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.796142578125	2	541.795663	1081.57677	1.8898	0.0010239	-0.86663	-0.00046954	1.0232	0.00055437	541.7952961702414	27.574	0.46886	27.574	27.293	27.762	0					39	11	7	0	0	0	0.011389	1	9646	9646		138.06	39.433	1	1025600			35558	196	24427	24517	35996	35996					0.03924824126374915
SEHVKLEQL	9	Unmodified	_SEHVKLEQL_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7964477539062	2	541.795663	1081.57677	4.8608	0.0026336	-2.6735	-0.0014485	2.1873	0.0011851	541.7940363563991	27.337	0.12368	27.337	27.278	27.402	0					7	4	2	0	0	0	0.18416	1	8708	8708		63.534	36.841	1	76794			35559	196	24427	24517	35997	35997					0.03924824126374915
SEHVKLEQL	9	Unmodified	_SEHVKLEQL_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.796142578125	2	541.795663	1081.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.596	1	27.596	27.096	28.096	0								0	0	0	0.00049573	1	10016	10016		138.06	42.247	1				35560	196	24427	24517	35998	35998					0.03924824126374915
SEHVKLEQL	9	Unmodified	_SEHVKLEQL_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7960815429688	2	541.795663	1081.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.415	1	27.415	26.915	27.915	0								0	0	0	0.051298	1	8965	8965		85.862	8.5442	1				35561	196	24427	24517	35999	35999					0.03924824126374915
SEHVKLEQL	9	Unmodified	_SEHVKLEQL_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.796630859375	2	541.795663	1081.57677	0.6376	0.00034545	0.85819	0.00046496	1.4958	0.00081041	541.7959450934086	27.518	0.42283	27.518	27.255	27.678	0					17	8	3	0	0	0	0.0067848	1	9867	9867		150.36	46.305	1	986680			35562	196	24427	24517	36000	36000					0.03924824126374915
SEHVKLEQL	9	Unmodified	_SEHVKLEQL_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant;ENSG00000175220|ENST00000311956|ARHGAP1	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7958984375	2	541.795663	1081.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.529	1	27.529	27.029	28.029	0								0	0	0	0.00049573	1	9863	9863		138.06	39.433	1				35563	196	24427	24517	36001	36001					0.03924824126374915
SEICGANHSF	10	Carbamidomethyl (C)	_SEIC(Carbamidomethyl (C))GANHSF_	SEIC(1)GANHSF		SEIC(58)GANHSF		0	1	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.2379760742188	2	561.237655	1120.46076	0.48058	0.00026972	-0.046025	-2.5831E-05	0.43456	0.00024389	561.2376976400175	27.497	0.21609	27.497	27.407	27.623	0					12	5	3	0	0	0	0.38179	1	9621	9621		58.246	12.274	1	485060			35564	7591	24428	24518	36002	36002	322				-0.09465442715986683
SEICGANHSF	10	Carbamidomethyl (C)	_SEIC(Carbamidomethyl (C))GANHSF_	SEIC(1)GANHSF		SEIC(91)GANHSF		0	1	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.2383422851562	2	561.237655	1120.46076	-0.0092216	-5.1755E-06	0.89436	0.00050195	0.88514	0.00049677	561.2382739120911	27.502	0.21253	27.502	27.389	27.601	0					9	4	3	0	0	0	0.12383	1	9981	9981		91.265	23.772	1	244790			35565	7591	24428	24518	36003	36003	322				-0.09465442715986683
SEIDQINKV	9	Unmodified	_SEIDQINKV_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000356937.7_1_1:1634348-1635645:-|nuORF;ENST00000463652.5_1_1:1635130-1635691:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2800903320312	2	523.279846	1044.54514	0.08811	4.6106E-05	-0.31879	-0.00016682	-0.23068	-0.00012071	523.2795690307946	31.398	0.28936	31.398	31.242	31.531	0					10	7	2	0	0	0	0.063171	1	11441	11441		90.601	5.44	1	420650			35566	1014	24429	24519	36004	36004					0.02464831372435583
SEIDQINKV	9	Unmodified	_SEIDQINKV_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000356937.7_1_1:1634348-1635645:-|nuORF;ENST00000463652.5_1_1:1635130-1635691:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.280029296875	2	523.279846	1044.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.44	1	31.44	30.94	31.94	0								0	0	0	0.18541	1	11855	11855		53.089	8.0668	1				35567	1014	24429	24519	36005	36005					0.02464831372435583
SEIDQINKV	9	Unmodified	_SEIDQINKV_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000356937.7_1_1:1634348-1635645:-|nuORF;ENST00000463652.5_1_1:1635130-1635691:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2798461914062	2	523.279846	1044.54514	-1.2835	-0.00067164	1.7455	0.0009134	0.46201	0.00024176	523.280695759639	31.204	0.17436	31.204	31.128	31.303	0					9	5	3	0	0	0	0.056004	1	10719	10719		93.143	5.4468	1	64719			35568	1014	24429	24519	36006	36006					0.02464831372435583
SEIDTNQNSL	10	Unmodified	_SEIDTNQNSL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.759033203125	2	560.759475	1119.5044	1.2795	0.00071748	-0.98842	-0.00055426	0.29105	0.00016321	560.7586528405496	31.619	0.47335	31.619	31.421	31.894	0					30	21	2	0	0	0	0.31784	1	10166	10166		65.278	13.75	1	171900			35569	5036	24430	24520	36007	36007					-0.050575547378457486
SEIDTNQNSL	10	Unmodified	_SEIDTNQNSL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.7598876953125	2	560.759475	1119.5044	0.48951	0.0002745	0.78021	0.00043751	1.2697	0.00071201	560.7597990677273	31.896	0.74108	31.896	31.723	32.464	0					44	18	3	0	0	0	0.03057	1	11679	11679		117.71	55.598	1	893620			35570	5036	24430	24520	36008	36008					-0.050575547378457486
SEIDTNQNSL	10	Unmodified	_SEIDTNQNSL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.7592163085938	2	560.759475	1119.5044	0.1261	7.071E-05	0.29739	0.00016677	0.42349	0.00023748	560.759631662552	31.677	0.3367	31.677	31.524	31.861	0					22	13	2	0	0	0	0.21577	1	10514	10514		77.533	33.156	1	131160			35571	5036	24430	24520	36009	36009					-0.050575547378457486
SEIDTNQNSL	10	Unmodified	_SEIDTNQNSL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7593994140625	2	560.759475	1119.5044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.671	1	31.671	31.171	32.171	0								0	0	0	0.045399	1	10932	10932		92.239	22.611	1				35572	5036	24430	24520	36010	36010					-0.050575547378457486
SEIDTNQNSL	10	Unmodified	_SEIDTNQNSL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7598266601562	2	560.759475	1119.5044	3.469	0.0019453	-0.31664	-0.00017756	3.1524	0.0017677	560.7593519645293	31.875	1.3628	31.875	31.684	33.046	0					50	27	2	0	0	0	0.023179	1	11957	11957		122.94	37.077	1	1216600			35573	5036	24430	24520	36011	36011					-0.050575547378457486
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2757568359375	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.238	1	23.238	22.738	23.738	0								0	0	0	0.045272	1	7665	7665		88.177	28.059	1				35574	4865	24431	24521	36012	36012					0.008710630869018132
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2754516601562	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.957	1	22.957	22.457	23.457	0								0	0	0	0.069826	1	6831	6831		80.455	10.827	1				35575	4865	24431	24521	36013	36013					0.008710630869018132
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2753295898438	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.176	1	23.176	22.676	23.676	0								0	0	0	0.0012548	1	7948	7948		145.16	45.781	1				35576	4865	24431	24521	36014	36014					0.008710630869018132
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2750244140625	2	530.275095	1058.53564	1.2059	0.00063947	-1.2421	-0.00065867	-0.036201	-1.9197E-05	530.2741885512327	22.996	0.13565	22.996	22.911	23.047	0					5	3	2	0	0	0	0.25761	1	6953	6953		54.722	12.248	1	161330			35577	4865	24431	24521	36015	36015					0.008710630869018132
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2755126953125	2	530.275095	1058.53564	-1.2022	-0.00063748	2.2387	0.0011871	1.0365	0.00054964	530.276195695089	22.988	0.18347	22.988	22.939	23.123	0					7	4	2	0	0	0	0.063171	1	6948	6948		90.601	26.394	1	184420			35578	4865	24431	24521	36016	36016					0.008710630869018132
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2755737304688	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.153	1	23.153	22.653	23.653	0								0	0	0	0.0026431	1	7809	7809		117.81	38.098	1				35579	4865	24431	24521	36017	36017					0.008710630869018132
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2753295898438	2	530.275095	1058.53564	3.4368	0.0018224	-4.333	-0.0022977	-0.89621	-0.00047524	530.773917443141	23.032	0.36242	23.032	22.855	23.218	0					16	7	3	0	0	0	0.02953	1	7802	7802		109.48	40.632	1	3424100			35580	4865	24431	24521	36018	36018					0.008710630869018132
SEIFHSQSF	9	Unmodified	_SEIFHSQSF_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389388-57389772:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.75341796875	2	541.251089	1080.48762	1.0398	0.00056278	-0.30279	-0.00016388	0.73699	0.0003989	541.2507657300831	35.76	0.090504	35.76	35.69	35.78	0					7	4	2	0	0	0	0.24334	1	11719	11719		56.434	12.317	1	47137			35581	7146	24432	24522	36019	36019					-0.04940010833138331
SEIFHSQSF	9	Unmodified	_SEIFHSQSF_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389388-57389772:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2515869140625	2	541.251089	1080.48762	0.28916	0.00015651	0.69377	0.00037551	0.98294	0.00053202	541.2513371876478	36.016	0.20315	36.016	35.93	36.134	0					13	5	4	0	0	0	0.12834	1	13555	13555		72.879	7.4139	1	243390			35582	7146	24432	24522	36020	36020					-0.04940010833138331
SEIFHSQSF	9	Unmodified	_SEIFHSQSF_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389388-57389772:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2514038085938	2	541.251089	1080.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.819	1	35.819	35.319	36.319	0								0	0	0	0.28666	1	12121	12121		37.812	1.3648	1				35583	7146	24432	24522	36021	36021					-0.04940010833138331
SEIFHSQSF	9	Unmodified	_SEIFHSQSF_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389388-57389772:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7542114257812	2	541.251089	1080.48762	-1.4835	-0.00080295	2.3033	0.0012466	0.81975	0.00044369	541.75401514448	35.793	0.093353	35.793	35.74	35.834	0					6	3	2	0	0	0	0.42902	1	12783	12783		39.253	3.6345	1	46007			35584	7146	24432	24522	36022	36022					-0.04940010833138331
SEIGKKIFKK	10	Unmodified	_SEIGKKIFKK_					0	0	0		tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.2475280761719	3	393.248291	1176.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.724	1	12.724	12.224	13.224	0								0	0	0	0.3963	1	2933	2933		31.634	8.2564	1				35585	22616	24433	24523	36023	36023					0.14175126362283663
SEIKKTVVL	9	Unmodified	_SEIKKTVVL_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ZC3H11A|p.P447S|1|0.3|ENSG00000058673|chr1:203847480-203847480|C/T|missense_variant	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.821044921875	2	508.82115	1015.62775	-0.021955	-1.1171E-05	0.13162	6.6971E-05	0.10966	5.5799E-05	508.82107130641657	25.491	0.17991	25.491	25.404	25.584	0					7	4	2	0	0	0	0.13267	1	8728	8728		71.877	17.101	1	311060			35586	1306	24434	24524	36024	36024					0.120557731712438
SEILKLQIR	9	Unmodified	_SEILKLQIR_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-3|SPG11	REV__nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.3430786132812	2	550.345323	1098.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.621	1	38.621	38.121	39.121	0								0	0	0	0.32356	1	12588	12588		30.504	7.4612	1		+		35587	13711	24435	24525	36025	36025					0.1307026681113257
SEILQANQL	9	Unmodified	_SEILQANQL_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;TBC1D23|p.A351Ifs*23|1|0.05|ENSG00000036054|chr3:100299289-100299290|-/ATTCACA|frameshift_variant	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.27655029296875	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.171	1	41.171	40.671	41.671	0								0	0	0	0.22075	1	13700	13700		47.96	8.7067	1				35588	1171	24436	24526	36026	36026					0.027888487179893673
SEILQANQL	9	Unmodified	_SEILQANQL_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;TBC1D23|p.A351Ifs*23|1|0.05|ENSG00000036054|chr3:100299289-100299290|-/ATTCACA|frameshift_variant	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2744140625	2	508.274564	1014.53457	1.1395	0.00057917	-0.79896	-0.00040609	0.34053	0.00017308	508.2740449276896	41.339	0.23494	41.339	41.279	41.514	0					19	10	3	0	0	0	0.012231	1	16248	16248		136.27	43.073	1	316670			35589	1171	24436	24526	36027	36027					0.027888487179893673
SEILQANQL	9	Unmodified	_SEILQANQL_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;TBC1D23|p.A351Ifs*23|1|0.05|ENSG00000036054|chr3:100299289-100299290|-/ATTCACA|frameshift_variant	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.27508544921875	2	508.274564	1014.53457	1.3129	0.00066734	0.074608	3.7921E-05	1.3876	0.00070526	508.27460569028284	41.316	0.26369	41.316	41.186	41.449	0					13	6	3	0	0	0	0.056004	1	16417	16417		93.143	5.4468	1	260470			35590	1171	24436	24526	36028	36028					0.027888487179893673
SEIPQTERM	9	Unmodified	_SEIPQTERM_					0	0	0		ENST00000552207.1_1_12:56188062-56211500:-|nuORF;ENSG00000205323|ENST00000336133|SARNP	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7646484375	2	545.763506	1089.51246	0.5056	0.00027594	1.009	0.00055065	1.5146	0.00082659	545.7644479274887	27.061	0.12219	27.061	27.017	27.139	0					6	4	2	0	0	0	0.53064	1	8586	8586		29.17	0.020503	1	37757			35591	7745	24437	24527	36029	36029					-0.028716990220800653
SEIQALTL	8	Unmodified	_SEIQALTL_					0	0	0		ENST00000474154.5_1_2:37458848-37468954:+|nuORF;ENSG00000003509|ENST00000002125|NDUFAF7	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7480773925781	2	437.74765	873.480748	0.86635	0.00037924	0.041022	1.7957E-05	0.90738	0.0003972	437.74771470508773	28.741	0.14624	28.741	28.668	28.814	0					8	5	2	0	0	0	0.27635	1	9005	9005		90.37	5.4543	1	107330			35592	936	24438	24528	36030	36030					0.03894676286279264
SEIQALTL	8	Unmodified	_SEIQALTL_					0	0	0		ENST00000474154.5_1_2:37458848-37468954:+|nuORF;ENSG00000003509|ENST00000002125|NDUFAF7	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.74755859375	2	437.74765	873.480748	-0.56785	-0.00024857	0.43545	0.00019062	-0.1324	-5.7958E-05	437.747871305217	28.967	0.6659	28.967	28.758	29.424	0					29	13	3	0	0	0	0.22624	1	10543	10543		125.81	5.193	1	5740500			35593	936	24438	24528	36031	36031					0.03894676286279264
SEIQEEKPEPV	11	Unmodified	_SEIQEEKPEPV_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	642.8196411132812	2	642.819532	1283.62451	0.58955	0.00037897	-0.40769	-0.00026207	0.18186	0.0001169	642.8191413265638	26.866	0.18111	26.866	26.745	26.927	0					10	4	3	0	0	0	0.00013011	1	9317	9317		144.77	43.308	1	423320			35594	4701	24439	24529	36032	36032					-0.005955664640850955
SEIQEEKPEPV	11	Unmodified	_SEIQEEKPEPV_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	642.819091796875	2	642.819532	1283.62451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.65	1	26.65	26.15	27.15	0								0	0	0	0.037656	1	8406	8406		97.597	16.072	1				35595	4701	24439	24529	36033	36033					-0.005955664640850955
SEIQEEKPEPV	11	Unmodified	_SEIQEEKPEPV_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	642.8197021484375	2	642.819532	1283.62451	-2.3018	-0.0014797	2.0095	0.0012917	-0.29234	-0.00018792	642.8211238302332	26.706	0.15117	26.706	26.625	26.776	0					8	3	3	0	0	0	0.21827	1	8639	8639		72.096	8.6691	1	92535			35596	4701	24439	24529	36034	36034					-0.005955664640850955
SEIQEEKPEPV	11	Unmodified	_SEIQEEKPEPV_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	642.8194580078125	2	642.819532	1283.62451	2.9391	0.0018893	-3.3121	-0.0021291	-0.37293	-0.00023973	642.8168879189448	26.829	0.36539	26.829	26.722	27.087	0					17	7	4	0	0	0	0.061126	1	9567	9567		99.788	8.5226	1	743270			35597	4701	24439	24529	36035	36035					-0.005955664640850955
SEIRFNLNG	9	Unmodified	_SEIRFNLNG_					0	0	0			REV__INPP5J|p.D603N|1|0.38|ENSG00000185133|chr22:31127970-31127970|G/A|missense_variant	REV__INPP5J|p.D603N|1|0.38|ENSG00000185133|chr22:31127970-31127970|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.5173034667969	3	350.517329	1048.53016	1.4657	0.00051377	-1.2249	-0.00042935	0.24084	8.4419E-05	350.5168609864277	29.434	0.359	29.434	29.241	29.6	0					15	7	3	0	0	0	0.54267	1	10805	10805		28.081	1.3886	1	572250	+		35598	20763	24440	24530	36036	36036					0.00783384295095857
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.27557373046875	2	494.774731	987.534909	-0.015646	-7.7412E-06	-0.50646	-0.00025058	-0.52211	-0.00025833	494.77456072401543	33.782	0.46292	33.782	33.682	34.145	0					59	19	5	0	0	0	0.070005	1	10994	10994		88.177	31.456	1	6404300			35599	1085	24441	24531	36037	36037					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.7745056152344	2	494.774731	987.534909	-0.065443	-3.238E-05	-0.38935	-0.00019264	-0.45479	-0.00022502	494.7745964287139	33.806	0.4831	33.806	33.676	34.16	0					55	20	5	0	0	0	0.015496	2	10998	10998;11123		129.42	33.231	1	6416700			35600	1085	24441	24531	36038;36039	36038					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7744445800781	2	494.774731	987.534909	0.75027	0.00037121	-0.9702	-0.00048003	-0.21993	-0.00010882	494.77441955349315	34.069	0.94097	34.069	33.881	34.822	0					79	24	5	0	0	0	0.00324	1	12636	12636		167.23	53.817	1	49570000			35601	1085	24441	24531	36040	36040					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.77459716796875	2	494.774731	987.534909	-0.42702	-0.00021128	0.28184	0.00013945	-0.14519	-7.1834E-05	494.7750485848558	34.065	1.0061	34.065	33.909	34.915	0					60	26	5	0	0	0	0.015496	2	12628	12628;12783		129.42	38.82	1	39195000			35602	1085	24441	24531	36041;36042	36041					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.77447509765625	2	494.774731	987.534909	-1.2597	-0.00062327	0.87567	0.00043326	-0.38403	-0.00019001	494.7753062816209	33.867	0.80154	33.867	33.698	34.499	0					86	33	5	0	0	0	0.012936	1	11364	11364		134.77	27.758	1	15556000			35603	1085	24441	24531	36043	36043					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.77447509765625	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.886	1	33.886	33.386	34.386	0								0	0	0	0.10319	1	11400	11400		70.816	17.88	1				35604	1085	24441	24531	36044	36044					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.77471923828125	2	494.774731	987.534909	0.68468	0.00033876	0.083188	4.1159E-05	0.76787	0.00037992	494.7751068009372	34.053	1.2092	34.053	33.865	35.075	0					81	31	6	0	0	0	0.0097668	1	13075	13075		141.52	38.747	1	104530000			35605	1085	24441	24531	36045	36045					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7746887207031	2	494.774731	987.534909	-0.75656	-0.00037433	0.81789	0.00040467	0.061324	3.0342E-05	494.7750994915574	34.055	0.19214	34.055	33.981	34.173	0					10	4	3	0	0	0	0.015496	1	13094	13094		129.42	39.051	1	360520			35606	1085	24441	24531	36046	36046					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.77490234375	2	494.774731	987.534909	0.069497	3.4385E-05	-0.061821	-3.0588E-05	0.0076758	3.7978E-06	494.77483547037946	33.853	0.82969	33.853	33.712	34.542	0					57	25	5	0	0	0	0.026848	1	11885	11885		112.11	21.737	1	13836000			35607	1085	24441	24531	36047	36047					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.77459716796875	2	494.774731	987.534909	0.91697	0.00045369	-0.078988	-3.9081E-05	0.83798	0.00041461	494.7752795285796	33.997	0.89192	33.997	33.892	34.784	0					59	18	5	0	0	0	0.00324	1	12969	12969		167.23	41.415	1	87502000			35608	1085	24441	24531	36048	36048					0.040642684378553895
SEISNIARV	9	Unmodified	_SEISNIARV_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.77435302734375	2	494.774731	987.534909	2.818	0.0013943	-2.951	-0.0014601	-0.13299	-6.58E-05	494.7736343599923	34.029	1.4374	34.029	33.876	35.313	0					70	29	6	0	0	0	0.00324	2	12963	12963;13157		167.23	41.415	1	108910000			35609	1085	24441	24531	36049;36050	36049					0.040642684378553895
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;ATRX|p.R840Kfs*9|1|0.36|ENSG00000085224|chrX:77682737-77682738|-/T|frameshift_variant;ATRX|p.K993Rfs*10|1|0.26|ENSG00000085224|chrX:77682278-77682278|T/-|frameshift_variant;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2554931640625	2	468.25584	934.497126	-0.43471	-0.00020355	-0.49245	-0.00023059	-0.92716	-0.00043415	468.2554833388518	28.062	0.13884	28.062	27.98	28.119	0					9	5	2	0	0	0	0.048471	1	8714	8714		95.815	30.012	1	123610			35610	1722;261	24442	24532	36051	36051					0.02725757452367361
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;ATRX|p.R840Kfs*9|1|0.36|ENSG00000085224|chrX:77682737-77682738|-/T|frameshift_variant;ATRX|p.K993Rfs*10|1|0.26|ENSG00000085224|chrX:77682278-77682278|T/-|frameshift_variant;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2553405761719	2	468.25584	934.497126	-0.64338	-0.00030127	-0.21515	-0.00010075	-0.85853	-0.00040201	468.2556014172171	28.327	0.20846	28.327	28.238	28.447	0					12	5	3	0	0	0	0.070005	1	10003	10003		88.177	27.205	1	840720			35611	1722;261	24442	24532	36052	36052					0.02725757452367361
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;ATRX|p.R840Kfs*9|1|0.36|ENSG00000085224|chrX:77682737-77682738|-/T|frameshift_variant;ATRX|p.K993Rfs*10|1|0.26|ENSG00000085224|chrX:77682278-77682278|T/-|frameshift_variant;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2554931640625	2	468.25584	934.497126	-1.0844	-0.00050779	-0.033512	-1.5692E-05	-1.1179	-0.00052348	468.2557387550965	28.097	0.22586	28.097	28.014	28.24	0					12	8	2	0	0	0	0.25761	1	9008	9008		54.722	1.7857	1	212660			35612	1722;261	24442	24532	36053	36053					0.02725757452367361
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;ATRX|p.R840Kfs*9|1|0.36|ENSG00000085224|chrX:77682737-77682738|-/T|frameshift_variant;ATRX|p.K993Rfs*10|1|0.26|ENSG00000085224|chrX:77682278-77682278|T/-|frameshift_variant;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2554016113281	2	468.25584	934.497126	-0.70778	-0.00033142	-0.42351	-0.00019831	-1.1313	-0.00052974	468.2555291153523	28.151	0.18411	28.151	28.069	28.253	0					6	4	2	0	0	0	0.30841	1	9318	9318		49.536	5.005	1	197770			35613	1722;261	24442	24532	36054	36054					0.02725757452367361
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;ATRX|p.R840Kfs*9|1|0.36|ENSG00000085224|chrX:77682737-77682738|-/T|frameshift_variant;ATRX|p.K993Rfs*10|1|0.26|ENSG00000085224|chrX:77682278-77682278|T/-|frameshift_variant;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX;ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2554626464844	2	468.25584	934.497126	-2.1673	-0.0010149	1.6379	0.00076695	-0.52942	-0.0002479	468.2565230173572	28.14	0.13591	28.14	28.057	28.193	0					8	3	3	0	0	0	0.085655	1	9308	9308		82.75	15.423	1	336030			35614	1722;261	24442	24532	36055	36055					0.02725757452367361
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7422790527344	2	453.742565	905.470577	-0.34891	-0.00015832	-0.22417	-0.00010171	-0.57308	-0.00026003	453.74245659362464	28.271	0.26289	28.271	28.144	28.407	0					22	8	4	0	0	0	0.24681	1	8792	8792		107.01	0	1	897010			35615	7198	24443	24533	36056	36056					0.014060685610388646
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.7422180175781	2	453.742565	905.470577	-0.55049	-0.00024978	-0.090148	-4.0904E-05	-0.64064	-0.00029069	453.74248944520025	28.523	0.33375	28.523	28.435	28.769	0					26	8	4	0	0	0	0.074162	1	10092	10092		162.25	31.221	1	5157700			35616	7198	24443	24533	36057	36057					0.014060685610388646
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.7424011230469	2	453.742565	905.470577	-1.1892	-0.00053958	0.75913	0.00034445	-0.43004	-0.00019513	453.74289932364934	28.298	0.32174	28.298	28.177	28.499	0					29	11	4	0	0	0	0.25987	1	9086	9086		95.815	16.103	1	1327800			35617	7198	24443	24533	36058	36058					0.014060685610388646
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7425842285156	2	453.742565	905.470577	0.7211	0.0003272	-0.78441	-0.00035592	-0.063312	-2.8727E-05	453.7421916859044	28.554	0.80112	28.554	28.126	28.927	0					31	16	4	0	0	0	0.2301	1	10470	10470		148.99	5.1	1	5408600			35618	7198	24443	24533	36059	36059					0.014060685610388646
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7423400878906	2	453.742565	905.470577	-0.4448	-0.00020182	-0.12027	-5.4569E-05	-0.56506	-0.00025639	453.7425348954556	28.556	0.21243	28.556	28.449	28.661	0					6	4	2	0	0	0	0.27635	1	10486	10486		90.37	0	1	137710			35619	7198	24443	24533	36060	36060					0.014060685610388646
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.74212646484375	2	453.742565	905.470577	0.032277	1.4645E-05	0.18662	8.4676E-05	0.21889	9.9322E-05	453.74261318453125	28.329	0.29399	28.329	28.24	28.534	0					18	7	4	0	0	0	0.24681	1	9378	9378		107.01	5.7549	1	954180			35620	7198	24443	24533	36061	36061					0.014060685610388646
SEIVREFK	8	Unmodified	_SEIVREFK_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;SMARCA1|p.N376Ifs*16|1|0.37|ENSG00000102038|chrX:129504774-129504774|T/-|frameshift_variant;SMARCA1|p.M710Wfs*6|1|0.37|ENSG00000102038|chrX:129487107-129487107|T/-|frameshift_variant;SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	ENSG00000153147|ENST00000283131|SMARCA5;SMARCA1|p.N376Ifs*16|1|0.37|ENSG00000102038|chrX:129504774-129504774|T/-|frameshift_variant	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.52239990234375	3	336.522192	1006.54475	0.51639	0.00017378	-0.54243	-0.00018254	-0.026041	-8.7632E-06	336.5221136106508	23.134	1.2742	23.134	23.035	24.309	0					66	29	6	0	0	0	0.63077	1	7601	7601		37.812	0	1	28648000			35621	5040;2151	24444	24534	36062	36062					0.04173456443231771
SEIVSAIKL	9	Unmodified	_SEIVSAIKL_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2919921875	2	480.292225	958.569897	0.67497	0.00032418	-0.73791	-0.00035441	-0.062944	-3.0231E-05	480.2918687851805	40.978	0.21385	40.978	40.922	41.136	0					16	8	3	0	0	0	0.11898	1	16123	16123		75.043	0.78827	1	220260	+		35622	17504	24445	24535	36063	36063					0.08895511245793841
SEIVSAIKL	9	Unmodified	_SEIVSAIKL_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.29193115234375	2	480.292225	958.569897	-0.49861	-0.00023948	0.033965	1.6313E-05	-0.46465	-0.00022317	480.29220553130386	40.973	0.26197	40.973	40.866	41.128	0					11	8	2	0	0	0	0.15163	1	16114	16114		67.494	0	1	181490	+		35623	17504	24445	24535	36064	36064					0.08895511245793841
SEIVTAVKL	9	Unmodified	_SEIVTAVKL_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.29193115234375	2	480.292225	958.569897	0.046712	2.2436E-05	-0.58206	-0.00027956	-0.53534	-0.00025712	480.2919272335779	40.701	0.14841	40.701	40.65	40.798	0					17	9	2	0	0	0	0.12834	1	13127	13127		72.879	0	1	171150	+		35624	13050	24446	24536	36065	36065					0.08895511245793841
SEIVTAVKL	9	Unmodified	_SEIVTAVKL_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.29205322265625	2	480.292225	958.569897	-0.18191	-8.7369E-05	-0.3826	-0.00018376	-0.56451	-0.00027113	480.2920303801046	41.035	0.31188	41.035	40.938	41.25	0					35	14	4	0	0	0	0.10915	1	15588	15588		77.318	2.2743	1	908010	+		35625	13050	24446	24536	36066	36066					0.08895511245793841
SEIYIHGL	8	Unmodified	_SEIYIHGL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.24786376953125	2	466.247818	930.481082	0.44454	0.00020726	-0.72194	-0.0003366	-0.2774	-0.00012934	466.2474558311023	39.636	0.15382	39.636	39.535	39.689	0					11	6	2	0	0	0	0.29779	1	15072	15072		83.287	17.39	1	269710			35626	6356	24447	24537	36067	36067					0.013060960061352489
SEIYIHGL	8	Unmodified	_SEIYIHGL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.247314453125	2	466.247818	930.481082	-0.13522	-6.3046E-05	0.079939	3.7271E-05	-0.055282	-2.5775E-05	466.2478370590893	39.529	0.22739	39.529	39.492	39.72	0					15	8	2	0	0	0	0.29779	1	15570	15570		83.287	17.39	1	72262			35627	6356	24447	24537	36068	36068					0.013060960061352489
SEIYIHGL	8	Unmodified	_SEIYIHGL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2476501464844	2	466.247818	930.481082	-0.49828	-0.00023232	0.034817	1.6233E-05	-0.46347	-0.00021609	466.2478707592194	39.535	0.19179	39.535	39.438	39.63	0					7	4	2	0	0	0	0.29779	1	15621	15621		83.287	17.39	1	502090			35628	6356	24447	24537	36069	36069					0.013060960061352489
SEKAKDLIL	9	Unmodified	_SEKAKDLIL_					0	0	0		ENST00000536093.5_3_12:27468169-27475385:+|nuORF;nc|ENSG00000211455|Q9Y2H1-2|STK38L;STK38L|p.F383Lfs*9|1|0.1|ENSG00000211455|chr12:27319392-27319392|T/-|frameshift_variant;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38;STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	ENST00000536093.5_3_12:27468169-27475385:+|nuORF;STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.80303955078125	2	508.802957	1015.59136	0.20239	0.00010298	0.32539	0.00016556	0.52778	0.00026853	508.80298901207453	28.787	0.26552	28.787	28.678	28.944	0					12	5	3	0	0	0	0.076532	1	10597	10597		85.862	10.819	1	512420			35629	7774;22496	24448	24538	36070	36070					0.08418896274520193
SEKAKDLIL	9	Unmodified	_SEKAKDLIL_					0	0	0		ENST00000536093.5_3_12:27468169-27475385:+|nuORF;nc|ENSG00000211455|Q9Y2H1-2|STK38L;STK38L|p.F383Lfs*9|1|0.1|ENSG00000211455|chr12:27319392-27319392|T/-|frameshift_variant;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38;STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	ENST00000536093.5_3_12:27468169-27475385:+|nuORF;STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.8031005859375	2	508.802957	1015.59136	-0.067135	-3.4158E-05	0.28447	0.00014474	0.21734	0.00011058	508.8030701155002	28.716	0.26852	28.716	28.608	28.877	0					13	5	4	0	0	0	0.19952	1	10446	10446		61.691	15.719	1	401740			35630	7774;22496	24448	24538	36071	36071					0.08418896274520193
SEKAKLLLV	9	Unmodified	_SEKAKLLLV_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.822998046875	2	500.823692	999.632832	-0.046508	-2.3292E-05	-0.65261	-0.00032684	-0.69911	-0.00035013	500.8234476542972	32.292	0.15655	32.292	32.189	32.345	0					12	7	2	0	0	0	0.50858	1	10404	10404		31.53	3.6476	1	40210	+		35631	17102	24449	24539	36072	36072					0.1330007703385263
SEKAKLLLV	9	Unmodified	_SEKAKLLLV_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.8233337402344	2	500.823692	999.632832	-0.13117	-6.5693E-05	-0.19271	-9.6515E-05	-0.32388	-0.00016221	500.8237099243475	32.539	0.25558	32.539	32.454	32.709	0					13	6	3	0	0	0	0.24095	1	11963	11963		56.721	0	1	365150	+		35632	17102	24449	24539	36073	36073					0.1330007703385263
SEKDHMVTM	9	Unmodified	_SEKDHMVTM_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.2389526367188	2	539.238809	1076.46307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.669	1	22.669	22.169	23.169	0								0	0	0	0.18645	1	6444	6444		52.937	1.744	1				35633	3678	24450	24540	36074	36074					-0.07210730302517732
SEKDHMVTM	9	Unmodified	_SEKDHMVTM_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2396850585938	2	539.238809	1076.46307	0.25258	0.0001362	0.17811	9.6044E-05	0.43069	0.00023225	539.2393641203522	23.004	0.21557	23.004	22.918	23.134	0					16	5	4	0	0	0	0.032052	1	7558	7558		107.01	10.817	1	1190200			35634	3678	24450	24540	36075	36075					-0.07210730302517732
SEKDHMVTM	9	Unmodified	_SEKDHMVTM_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2385864257812	2	539.238809	1076.46307	-0.12932	-6.9732E-05	-0.041696	-2.2484E-05	-0.17101	-9.2217E-05	539.2394979561757	22.727	0.17107	22.727	22.63	22.801	0					12	6	3	0	0	0	0.22837	1	6727	6727		58.23	8.7884	1	160070			35635	3678	24450	24540	36076	36076					-0.07210730302517732
SEKDHMVTM	9	Unmodified	_SEKDHMVTM_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2391357421875	2	539.238809	1076.46307	1.9458	0.0010492	-2.3783	-0.0012825	-0.4325	-0.00023322	539.2381248957669	22.899	0.51082	22.899	22.55	23.061	0					24	10	5	0	0	0	0.048471	1	7829	7829		95.815	41.039	1	1020000			35636	3678	24450	24540	36077	36077					-0.07210730302517732
SEKDHMVTM	9	Unmodified	_SEKDHMVTM_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.2388916015625	2	539.238809	1076.46307	-1.4766	-0.00079623	0.91319	0.00049243	-0.5634	-0.00030381	539.239782369694	22.815	0.18853	22.815	22.723	22.911	0					8	4	3	0	0	0	0.25761	1	6849	6849		54.722	17.563	1	134970			35637	3678	24450	24540	36078	36078					-0.07210730302517732
SEKDSVVSL	9	Unmodified	_SEKDSVVSL_					0	0	0		SRFBP1|p.P207H|1|0.31|ENSG00000151304|chr5:122020355-122020355|C/A|missense_variant;SRFBP1|p.N236Kfs*5|4|0.26|ENSG00000151304|chr5:122020434-122020435|-/A|frameshift_variant;SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant;ENSG00000151304|ENST00000339397|SRFBP1	SRFBP1|p.P207H|1|0.31|ENSG00000151304|chr5:122020355-122020355|C/A|missense_variant	SRFBP1|p.P207H|1|0.31|ENSG00000151304|chr5:122020355-122020355|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2535400390625	2	482.253297	962.492041	0.073192	3.5297E-05	-0.48531	-0.00023404	-0.41212	-0.00019875	482.25318962475353	30.865	0.18423	30.865	30.762	30.947	0					11	7	2	0	0	0	0.25761	1	9864	9864		54.722	4.6978	1	68768			35638	4954	24451	24541	36079	36079					0.009294535897652167
SEKDSVVSL	9	Unmodified	_SEKDSVVSL_					0	0	0		SRFBP1|p.P207H|1|0.31|ENSG00000151304|chr5:122020355-122020355|C/A|missense_variant;SRFBP1|p.N236Kfs*5|4|0.26|ENSG00000151304|chr5:122020434-122020435|-/A|frameshift_variant;SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant;ENSG00000151304|ENST00000339397|SRFBP1	SRFBP1|p.P207H|1|0.31|ENSG00000151304|chr5:122020355-122020355|C/A|missense_variant	SRFBP1|p.P207H|1|0.31|ENSG00000151304|chr5:122020355-122020355|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.25311279296875	2	482.253297	962.492041	-0.10754	-5.1862E-05	-0.35807	-0.00017268	-0.46561	-0.00022454	482.2530889122052	31.165	0.21986	31.165	31.033	31.253	0					13	5	3	0	0	0	0.022525	1	11304	11304		117.81	38.098	1	455890			35639	4954	24451	24541	36080	36080					0.009294535897652167
SEKDTKQIL	9	Unmodified	_SEKDTKQIL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2957153320312	2	531.295496	1060.57644	1.0692	0.00056804	-0.45691	-0.00024275	0.61226	0.00032529	531.2951196783536	20.733	0.18319	20.733	20.636	20.819	0					14	6	3	0	0	0	0.026656	1	5608	5608		106.68	32.708	1	621380			35640	6946	24452	24542	36081	36081					0.0485740440653899
SEKDTKQIL	9	Unmodified	_SEKDTKQIL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2958984375	2	531.295496	1060.57644	-0.17202	-9.1393E-05	1.1269	0.00059869	0.95484	0.0005073	531.2959707702797	20.789	0.31286	20.789	20.626	20.938	0					24	10	4	0	0	0	0.064446	1	5856	5856		74.165	2.8693	1	631680			35641	6946	24452	24542	36082	36082					0.0485740440653899
SEKDTKQIL	9	Unmodified	_SEKDTKQIL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2957763671875	2	531.295496	1060.57644	1.721	0.00091435	-1.2575	-0.00066809	0.46352	0.00024627	531.2948893725137	21.016	0.86126	21.016	20.512	21.374	0					30	17	4	0	0	0	0.014648	1	6892	6892		126.24	19.235	1	3409000			35642	6946	24452	24542	36083	36083					0.0485740440653899
SEKDTKQIL	9	Unmodified	_SEKDTKQIL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2957763671875	2	531.295496	1060.57644	1.1776	0.00062564	-0.69472	-0.0003691	0.48285	0.00025654	531.2950795652088	20.834	0.26025	20.834	20.692	20.952	0					15	6	4	0	0	0	0.029172	1	5945	5945		104.01	16.259	1	532690			35643	6946	24452	24542	36084	36084					0.0485740440653899
SEKDTKQIL	9	Unmodified	_SEKDTKQIL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2963256835938	2	531.295496	1060.57644	-1.2388	-0.00065815	1.8525	0.00098422	0.61373	0.00032607	531.2964628312994	20.859	0.19447	20.859	20.725	20.919	0					9	4	3	0	0	0	0.026095	1	5938	5938		106.88	0.19718	1	168070			35644	6946	24452	24542	36085	36085					0.0485740440653899
SEKDTKQIL	9	Unmodified	_SEKDTKQIL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2955932617188	2	531.295496	1060.57644	0.72455	0.00038495	-0.23649	-0.00012564	0.48806	0.0002593	531.2954570767004	21	0.36199	21	20.844	21.206	0					12	7	2	0	0	0	0.085309	1	6777	6777		76.17	12.636	1	1433000			35645	6946	24452	24542	36086	36086					0.0485740440653899
SEKEAKKSSKK	11	Unmodified	_SEKEAKKSSKK_					0	0	0		SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.24310302734375	3	417.241865	1248.70376	2.7372	0.0011421	0.20829	8.6908E-05	2.9455	0.001229	417.2419549831614	28.983	0.31311	28.983	28.877	29.19	0					21	6	5	0	0	0	0.59078	1	10579	10579		37.6	37.6	1	1454200			35646	1758	24453	24543	36087	36087					0.0893612528070662
SEKEKQIVL	9	Unmodified	_SEKEKQIVL_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.314697265625	2	537.313689	1072.61282	1.3975	0.00075088	0.67735	0.00036395	2.0748	0.0011148	537.3140446142917	23.851	0.24642	23.851	23.751	23.997	0					16	9	3	0	0	0	0.10821	1	6946	6946		70.816	21.375	1	220630			35647	6032	24454	24544	36088	36088					0.07942281303235177
SEKEKQIVL	9	Unmodified	_SEKEKQIVL_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.3140869140625	2	537.313689	1072.61282	-0.35848	-0.00019261	1.3443	0.00072231	0.98582	0.0005297	537.3145153220435	23.895	0.22972	23.895	23.797	24.026	0					19	8	3	0	0	0	0.16962	1	7227	7227		58.246	17.468	1	416230			35648	6032	24454	24544	36089	36089					0.07942281303235177
SEKEKQIVL	9	Unmodified	_SEKEKQIVL_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3140869140625	2	537.313689	1072.61282	1.8716	0.0010056	-2.7451	-0.001475	-0.87349	-0.00046934	537.3130998628964	24.104	0.36542	24.104	23.995	24.36	0					14	7	2	0	0	0	0.037098	1	8403	8403		96.034	28.54	1	3450500			35649	6032	24454	24544	36090	36090					0.07942281303235177
SEKEKQIVL	9	Unmodified	_SEKEKQIVL_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3138427734375	2	537.313689	1072.61282	-1.4237	-0.00076498	3.7192	0.0019984	2.2955	0.0012334	537.3154029942245	23.954	0.25022	23.954	23.828	24.078	0					13	6	3	0	0	0	0.36135	1	7371	7371		37.812	16.865	1	336400			35650	6032	24454	24544	36091	36091					0.07942281303235177
SEKEQRQAL	9	Unmodified	_SEKEQRQAL_					0	0	0		ENST00000502531.1_1_5:179023563-179032937:+|nuORF;ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000502531.1_1_5:179023563-179032937:+|nuORF	ENST00000502531.1_1_5:179023563-179032937:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.788818359375	2	544.78837	1087.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.013	1	16.013	15.513	16.513	0								0	0	0	0.0026431	1	4347	4347		117.81	27.21	1				35651	6624	24455	24545	36092	36092					0.021907519782416784
SEKFIKAAI	9	Unmodified	_SEKFIKAAI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.8003234863281	2	503.800217	1005.58588	0.085558	4.3104E-05	0.040934	2.0622E-05	0.12649	6.3726E-05	503.80019864680173	28.885	0.11469	28.885	28.829	28.944	0					6	2	3	0	0	0	0.063171	1	10646	10646		90.601	39.408	1	160670			35652	3738	24456	24546	36093	36093					0.08331217482702868
SEKFIKAAI	9	Unmodified	_SEKFIKAAI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.80047607421875	2	503.800217	1005.58588	-0.41846	-0.00021082	1.1175	0.00056301	0.69906	0.00035219	503.80073502472766	28.831	0.21676	28.831	28.758	28.975	0					8	4	3	0	0	0	0.063171	1	10498	10498		90.601	39.408	1	189780			35653	3738	24456	24546	36094	36094					0.08331217482702868
SEKFSQML	8	Unmodified	_SEKFSQML_					0	0	0			REV__SYNGAP1|p.F979Ifs*5|1|0.67|ENSG00000197283|chr6:33443481-33443482|-/C|frameshift_variant	REV__SYNGAP1|p.F979Ifs*5|1|0.67|ENSG00000197283|chr6:33443481-33443482|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.23895263671875	2	485.239135	968.463718	0.65888	0.00031971	-1.0071	-0.0004887	-0.34825	-0.00016898	485.23861712521193	38.15	0.46342	38.15	38.01	38.474	0					34	18	3	0	0	0	0.66372	1	14472	14472		38.806	1.647	1	110120	+		35654	17324	24457	24547	36095	36095					-0.02177567591161278
SEKGQVEVF	9	Unmodified	_SEKGQVEVF_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7637634277344	2	511.761289	1021.50803	-0.34794	-0.00017806	3.7997	0.0019446	3.4518	0.0017665	511.7633604964506	30.87	0.24108	30.87	30.775	31.016	0					20	8	3	0	0	0	0.13726	1	10166	10166		70.816	7.2824	1	174160			35655	2360	24458	24548	36096	36096					-0.0018684017333043812
SEKHIEVEV	9	Unmodified	_SEKHIEVEV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.280029296875	2	535.279846	1068.54514	0.1759	9.4155E-05	0.45972	0.00024608	0.63562	0.00034023	535.2800872541646	25.412	0.17565	25.412	25.32	25.496	0					9	4	3	0	0	0	0.15163	1	8686	8686		67.494	8.7117	1	369110			35656	3682	24459	24549	36097	36097					0.013608313724262189
SEKHIEVEV	9	Unmodified	_SEKHIEVEV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2800903320312	2	535.279846	1068.54514	-0.6066	-0.0003247	0.77095	0.00041267	0.16435	8.7973E-05	535.2801913863227	25.149	0.17388	25.149	25.057	25.231	0					9	5	2	0	0	0	0.22837	1	7786	7786		58.23	5.2932	1	137380			35657	3682	24459	24549	36098	36098					0.013608313724262189
SEKHIEVEV	9	Unmodified	_SEKHIEVEV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2798461914062	2	535.279846	1068.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.422	1	25.422	24.922	25.922	0								0	0	0	0.0095889	1	9020	9020		110.12	10.745	1				35658	3682	24459	24549	36099	36099					0.013608313724262189
SEKHIEVEV	9	Unmodified	_SEKHIEVEV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2794799804688	2	535.279846	1068.54514	1.0835	0.00058	-1.0546	-0.00056453	0.028904	1.5472E-05	535.2788863506091	25.214	0.13732	25.214	25.128	25.265	0					5	3	2	0	0	0	0.28897	1	7993	7993		51.193	4.7359	1	106780			35659	3682	24459	24549	36100	36100					0.013608313724262189
SEKHIEVEV	9	Unmodified	_SEKHIEVEV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.280029296875	2	535.279846	1068.54514	-1.3579	-0.00072688	2.2635	0.0012116	0.90553	0.00048471	535.2810957681687	25.207	0.18185	25.207	25.114	25.296	0					7	4	2	0	0	0	0.1424	1	7988	7988		69.628	14.851	1	164040			35660	3682	24459	24549	36101	36101					0.013608313724262189
SEKHIEVEV	9	Unmodified	_SEKHIEVEV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2799072265625	2	535.279846	1068.54514	1.8742	0.0010032	-1.5354	-0.00082188	0.33875	0.00018132	535.2789645525368	25.307	0.26867	25.307	25.196	25.464	0					9	5	2	0	0	0	0.07136	1	8855	8855		87.696	10.922	1	923590			35661	3682	24459	24549	36102	36102					0.013608313724262189
SEKKDPPQL	9	Unmodified	_SEKKDPPQL_					0	0	0		nc|ENSG00000100578|Q9BVV6-4|KIAA0586;KIAA0586|p.P1497Lfs*6|1|0.11|ENSG00000100578|chr14:58547816-58547816|C/-|frameshift_variant;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586;ENST00000538571.6_1_14:58909433-59003756:+|nuORF;nc|ENSG00000100578|Q9BVV6-2|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2830200195312	2	521.282389	1040.55022	1.5158	0.00079016	-1.2202	-0.00063608	0.29558	0.00015408	521.2817741073296	19.32	0.62628	19.32	19.169	19.795	0					30	14	3	0	0	0	0.30841	1	5864	5864		49.536	3.5638	1	248040			35662	2044	24460	24550	36103	36103					0.031571352350511006
SEKKIFIGL	9	Unmodified	_SEKKIFIGL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.8151245117188	2	517.815867	1033.61718	0.4104	0.00021251	-0.11139	-5.7681E-05	0.299	0.00015483	517.8158143523267	36.123	0.29159	36.123	35.976	36.267	0					20	14	2	0	0	0	0.28897	1	11839	11839		51.193	10.415	1	122100			35663	2322	24461	24551	36104	36104					0.10171790516801593
SEKKKPTN	8	Unmodified	_SEKKKPTN_					0	0	0			REV__ENST00000481622.1_1_3:23848730-23850221:+|nuORF	REV__ENST00000481622.1_1_3:23848730-23850221:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2646789550781	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.721	1	14.721	14.221	15.221	0								0	0	0	1.7419	1	3173	3173		35.618	0	1		+		35664	16353	24462	24552	36105	36105					0.04540883409151775
SEKKNSGAL	9	Unmodified	_SEKKNSGAL_					0	0	0		HMOX2|p.Q165Pfs*26|1|0.31|ENSG00000103415|chr16:4507993-4507994|-/G|frameshift_variant;ENSG00000103415|ENST00000570646|HMOX2	HMOX2|p.Q165Pfs*26|1|0.31|ENSG00000103415|chr16:4507993-4507994|-/G|frameshift_variant	HMOX2|p.Q165Pfs*26|1|0.31|ENSG00000103415|chr16:4507993-4507994|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2533874511719	2	467.253631	932.49271	0.6505	0.00030395	-1.1979	-0.00055973	-0.54741	-0.00025578	467.25306076867025	13.58	0.14832	13.58	13.505	13.653	0					7	3	3	0	0	0	0.021961	1	3338	3338		118.74	39.03	1	268010			35665	2237	24463	24553	36106	36106					0.023762930294765283
SEKKQINVC	9	Unmodified	_SEKKQINVC_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.777099609375	2	524.776416	1047.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.39	1	18.39	17.89	18.89	0								0	0	0	0.31838	1	4568	4568		31.53	3.6476	1				35666	2636	24464	24554	36107	36107					0.016411952202361135
SEKLGGAEV	9	Unmodified	_SEKLGGAEV_					0	0	0		ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.23468017578125	2	445.234907	888.455261	-0.18738	-8.3429E-05	-0.67834	-0.00030202	-0.86572	-0.00038545	445.23473119694995	24.619	0.2178	24.619	24.511	24.729	0					8	4	3	0	0	0	0.076532	1	8648	8648		85.862	18.368	1	355330			35667	4657	24465	24555	36108	36108					0.006572017638632133
SEKLGGAEV	9	Unmodified	_SEKLGGAEV_					0	0	0		ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2347717285156	2	445.234907	888.455261	-0.46265	-0.00020599	0.43839	0.00019518	-0.024267	-1.0805E-05	445.23507423830983	24.587	0.30902	24.587	24.43	24.739	0					15	6	3	0	0	0	0.19952	1	8511	8511		61.691	1.573	1	509050			35668	4657	24465	24555	36109	36109					0.006572017638632133
SEKLSFLFDHI	11	Unmodified	_SEKLSFLFDHI_					0	0	0			REV__ENSG00000113194|ENST00000261942|FAF2	REV__ENSG00000113194|ENST00000261942|FAF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	668.349365234375	2	668.350803	1334.68705	-3.0039	-0.0020077	0.60998	0.00040768	-2.3939	-0.0016	668.3509656110697	34.385	0.26056	34.385	34.277	34.538	0					10	5	3	0	0	0	0.55968	1	13189	13189		30.318	0	1	351750	+		35669	14026	24466	24556	36110	36110					0.03309624394773891
SEKLVSVM	8	Unmodified	_SEKLVSVM_					0	0	0		nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.7438659667969	2	446.744053	891.473554	0.60609	0.00027077	-1.3614	-0.0006082	-0.75531	-0.00033743	446.74366344155567	33.264	0.16891	33.264	33.182	33.351	0					11	4	3	0	0	0	0.49216	1	12296	12296		60.972	7.6205	1	190770			35670	4108	24467	24557	36111	36111					0.023476204142184542
SEKLVSVM	8	Unmodified	_SEKLVSVM_					0	0	0		nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.7438659667969	2	446.744053	891.473554	0.83033	0.00037094	-1.7936	-0.00080129	-0.96329	-0.00043034	446.7435117235024	33.24	0.26338	33.24	33.135	33.399	0					11	5	3	0	0	0	0.51384	1	12631	12631		58.782	5.4305	1	339010			35671	4108	24467	24557	36112	36112					0.023476204142184542
SEKMLQLMK	9	Unmodified	_SEKMLQLMK_					0	0	0			REV__tr|U7SWD3|U7SWD3_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00986PE=4SV=1	REV__tr|U7SWD3|U7SWD3_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00986PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2992553710938	2	554.29867	1106.58279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.027	1	19.027	18.527	19.527	0								0	0	0	0.2591	1	4844	4844		42.396	0	1		+		35672	22001	24468	24558	36113	36113					0.03375883042053829
SEKNFNEI	8	Unmodified	_SEKNFNEI_					0	0	0			REV__ENSG00000187753|ENST00000339137|C9orf153	REV__ENSG00000187753|ENST00000339137|C9orf153	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7376708984375	2	490.737814	979.461075	0.81806	0.00040145	1.1578	0.00056817	1.9758	0.00096962	490.73730369454245	33.223	0.24302	33.223	33.147	33.39	0					9	6	2	0	0	0	0.39125	1	12281	12281		71.877	8.5712	1	134850	+		35673	17136	24469	24559	36114	36114					-0.02947699724472841
SEKNLNMIL	9	Unmodified	_SEKNLNMIL_					0	0	0		ENST00000519416.5_2_8:38677120-38677207:+|nuORF	ENST00000519416.5_2_8:38677120-38677207:+|nuORF	ENST00000519416.5_2_8:38677120-38677207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2866821289062	2	531.286617	1060.55868	0.11979	6.3643E-05	-0.87614	-0.00046548	-0.75635	-0.00040184	531.2867157870179	35.494	0.37895	35.494	35.372	35.751	0					20	10	3	0	0	0	0.12239	1	13319	13319		74.255	2.3776	1	370330			35674	10285	24470	24560	36115	36115					0.030823658800272824
SEKNMISKL	9	Unmodified	_SEKNMISKL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2870483398438	2	525.286617	1048.55868	0.66931	0.00035158	-0.48695	-0.00025579	0.18237	9.5794E-05	525.2865065212288	26.335	0.23998	26.335	26.243	26.483	0					14	7	3	0	0	0	0.0088974	1	7989	7989		143.37	44.744	1	285830			35675	1172	24471	24561	36116	36116					0.03634365880020596
SEKNMISKL	9	Unmodified	_SEKNMISKL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2869262695312	2	525.286617	1048.55868	0.096435	5.0656E-05	-0.50891	-0.00026732	-0.41247	-0.00021667	525.2868938254214	26.576	0.36514	26.576	26.481	26.847	0					24	8	4	0	0	0	0.0071744	1	9193	9193		148.69	55.547	1	1954100			35676	1172	24471	24561	36117	36117					0.03634365880020596
SEKNMISKL	9	Unmodified	_SEKNMISKL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2867431640625	2	525.286617	1048.55868	0.15612	8.2007E-05	-0.3491	-0.00018338	-0.19299	-0.00010137	525.2866954965766	26.602	0.26824	26.602	26.543	26.811	0					8	5	3	0	0	0	0.0071744	1	9550	9550		148.69	71.916	1	614320			35677	1172	24471	24561	36118	36118					0.03634365880020596
SEKNMISKL	9	Unmodified	_SEKNMISKL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.287353515625	2	525.286617	1048.55868	-1.2457	-0.00065434	2.6186	0.0013755	1.373	0.0007212	525.2882456888518	26.421	0.1898	26.421	26.319	26.509	0					7	4	2	0	0	0	0.054723	1	8512	8512		93.598	27.168	1	225780			35678	1172	24471	24561	36119	36119					0.03634365880020596
SEKNNSNSL	9	Unmodified	_SEKNNSNSL_					0	0	0		ENST00000429866.1_1_3:195664216-195664672:+|nuORF;ENST00000504656.1_1_5:289217-290334:-|nuORF;nc|ENSG00000163605|Q9NY27-2|PPP4R2;nc|ENSG00000163605|Q9NY27-3|PPP4R2;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7357177734375	2	496.735803	991.457052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.556	1	15.556	15.056	16.056	0								0	0	0	0.010168	1	4277	4277		109.48	13.288	1				35679	5582	24472	24562	36120	36120					-0.03901789218173235
SEKNPSEVTL	10	Unmodified	_SEKNPSEVTL_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2835693359375	2	552.282586	1102.55062	1.6033	0.00088548	0.55859	0.0003085	2.1619	0.001194	552.282790155053	28.573	0.46429	28.573	28.365	28.829	0					16	9	2	0	0	0	0.21577	1	10497	10497		77.533	4.654	1	462310			35680	1636	24473	24563	36121	36121					0.0034451016424554837
SEKNPSEVTL	10	Unmodified	_SEKNPSEVTL_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.2828979492188	2	552.282586	1102.55062	-1.2848	-0.00070958	2.0639	0.0011399	0.77908	0.00043027	552.283673523656	28.371	0.24964	28.371	28.227	28.477	0					9	6	2	0	0	0	0.39647	1	9393	9393		56.632	1.9099	1	92881			35681	1636	24473	24563	36122	36122					0.0034451016424554837
SEKNRRLCQ	9	Carbamidomethyl (C)	_SEKNRRLC(Carbamidomethyl (C))Q_	SEKNRRLC(1)Q		SEKNRRLC(41)Q		0	1	0		ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.5403137207031	3	397.540139	1189.59859	-0.6328	-0.00025157	0.92156	0.00036636	0.28876	0.00011479	397.54050742409964	17.49	0.37159	17.49	17.379	17.751	0					10	7	2	0	0	0	0.41113	1	5068	5068		40.778	40.778	1	363110			35682	144	24474	24564	36123	36123	9				0.011373056032880413
SEKPAEATA	9	Unmodified	_SEKPAEATA_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.22491455078125	2	452.224539	902.434526	-0.41002	-0.00018542	0.11032	4.9889E-05	-0.2997	-0.00013553	452.2246318078577	15.372	0.1156	15.372	15.314	15.429	0					4	2	2	0	0	0	0.40353	1	4051	4051		41.427	0.64845	1	93407			35683	7818	24475	24565	36124	36124					-0.02059388615816715
SEKQEFYQL	9	Unmodified	_SEKQEFYQL_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.285400390625	2	586.285128	1170.5557	0.086338	5.0619E-05	-0.80258	-0.00047054	-0.71625	-0.00041992	586.2848469344998	37.401	0.17802	37.401	37.316	37.494	0					8	5	2	0	0	0	0.35021	1	14191	14191		45.972	1.8554	1	62596			35684	4140	24476	24566	36125	36125					-0.022751859731215518
SEKQEHVKL	9	Unmodified	_SEKQEHVKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74595806-74598423:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.3016357421875	2	549.301113	1096.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.185	1	17.185	16.685	17.685	0								0	0	0	0.3063	1	4232	4232		26.693	0	1				35685	7726	24477	24567	36126	36126					0.04324226500671102
SEKQEQLYL	9	Unmodified	_SEKQEQLYL_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.L754I|2|0.31|ENSG00000163104|chr4:94278697-94278697|C/A|missense_variant;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.2940673828125	2	569.292953	1136.57135	0.085597	4.873E-05	-0.64688	-0.00036826	-0.56128	-0.00031953	569.2924221807224	34.325	0.20798	34.325	34.246	34.454	0					12	5	3	0	0	0	0.24334	1	12771	12771		56.434	1.6575	1	190970			35686	5528	24478	24568	36127	36127					0.008531005438953798
SEKQLIQRL	9	Unmodified	_SEKQLIQRL_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;GAPVD1|p.S186Ffs*2|1|0.33|ENSG00000165219|chr9:125302347-125302348|-/T|frameshift_variant	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.8330688476562	2	557.83258	1113.65061	0.54271	0.00030274	0.27105	0.0001512	0.81376	0.00045394	557.8326292033904	29.402	0.21189	29.402	29.273	29.485	0					11	5	3	0	0	0	0.073657	1	10506	10506		70.816	0.41764	1	430490			35687	5776	24479	24569	36128	36128					0.09832792288693781
SEKRENVM	8	Unmodified	_SEKRENVM_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7445068359375	2	496.745116	991.475679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.175	1	16.175	15.675	16.675	0								0	0	0	1.7419	1	3641	3641		30.504	1.3541	1				35688	4392	24480	24570	36129	36129					-0.020399508479727047
SEKRENVM	8	Unmodified	_SEKRENVM_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.744384765625	2	496.745116	991.475679	0.1435	7.1282E-05	-0.89656	-0.00044536	-0.75306	-0.00037408	496.7446514540909	16.224	0.11588	16.224	16.154	16.27	0					6	3	2	0	0	0	0.41701	1	3800	3800		68.787	7.8149	1	72984			35689	4392	24480	24570	36130	36130					-0.020399508479727047
SEKRKQISV	9	Unmodified	_SEKRKQISV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.8175048828125	2	537.81693	1073.61931	2.0705	0.0011136	-0.86982	-0.00046781	1.2007	0.00064575	537.8164507019649	16.496	0.26769	16.496	16.407	16.674	0					14	6	3	0	0	0	0.18505	1	4495	4495		47.96	0	1	799490			35690	2084	24481	24571	36131	36131					0.08544219254599739
SEKRKQISV	9	Unmodified	_SEKRKQISV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8174438476562	2	537.81693	1073.61931	1.8916	0.0010173	-0.93982	-0.00050545	0.95179	0.00051189	537.8162976816704	16.472	0.26643	16.472	16.363	16.63	0					13	5	3	0	0	0	0.34452	1	4726	4726		31.53	0	1	1003100			35691	2084	24481	24571	36132	36132					0.08544219254599739
SEKRKQISV	9	Unmodified	_SEKRKQISV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.8172607421875	2	537.81693	1073.61931	1.0205	0.00054886	-0.0079159	-4.2573E-06	1.0126	0.0005446	537.8171236475882	16.262	0.11356	16.262	16.195	16.309	0					7	3	3	0	0	0	0.15558	1	3814	3814		42.864	18.345	1	160580			35692	2084	24481	24571	36133	36133					0.08544219254599739
SEKRKQISV	9	Unmodified	_SEKRKQISV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.8173828125	2	537.81693	1073.61931	-1.4366	-0.00077263	1.9272	0.0010365	0.49057	0.00026384	537.8181440209831	16.257	0.11323	16.257	16.182	16.296	0					5	3	2	0	0	0	0.17062	1	3820	3820		49.536	11.725	1	130790			35693	2084	24481	24571	36134	36134					0.08544219254599739
SEKRKQISV	9	Unmodified	_SEKRKQISV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8172607421875	2	537.81693	1073.61931	1.9973	0.0010742	-1.2303	-0.00066169	0.76693	0.00041247	537.8162748157586	16.491	0.2666	16.491	16.384	16.65	0					13	5	3	0	0	0	0.2546	1	4588	4588		40.058	0	1	1621600			35694	2084	24481	24571	36135	36135					0.08544219254599739
SEKRKQISV	9	Unmodified	_SEKRKQISV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8171997070312	2	537.81693	1073.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.499	1	16.499	15.999	16.999	0								0	0	0	0.0077941	1	4579	4579		85.161	21.855	1				35695	2084	24481	24571	36136	36136					0.08544219254599739
SEKRMKLTL	9	Unmodified	_SEKRMKLTL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.2179870605469	3	369.218115	1104.63251	0.4671	0.00017246	-1.213	-0.00044784	-0.74585	-0.00027538	369.21783537977893	24.652	1.617	24.652	24.34	25.957	0					74	36	5	0	0	0	0.12834	1	8331	8331		72.879	16.445	1	2041600			35696	4582;9337	24482	24572	36137	36137					0.08438334042352835
SEKRMKLTL	9	Unmodified	_SEKRMKLTL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.21807861328125	3	369.218115	1104.63251	3.1871	0.0011767	-4.0427	-0.0014926	-0.85556	-0.00031589	369.2168923128533	24.556	1.4851	24.556	24.397	25.882	0					62	28	4	0	0	0	0.12834	1	8495	8495		72.879	7.4139	1	2641700			35697	4582;9337	24482	24572	36138	36138					0.08438334042352835
SEKRRRAK	8	Unmodified	_SEKRRRAK_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8158569335938	2	515.815056	1029.61556	-1.537	-0.00079279	3.8102	0.0019654	2.2732	0.0011726	515.8169551129595	27.825	0.13412	27.825	27.73	27.864	0					5	3	2	0	0	0	0.58597	1	9158	9158		51.335	3.4199	1	102030			35698	4115	24483	24573	36139	36139					0.10193594271413531
SEKSLENETL	10	Unmodified	_SEKSLENETL_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.2857666015625	2	575.285325	1148.5561	-0.09894	-5.6919E-05	0.65839	0.00037876	0.55945	0.00032184	575.2856304412702	29.42	0.21376	29.42	29.313	29.527	0					13	5	3	0	0	0	0.010919	1	10505	10505		139.38	37.922	1	578880			35699	1336	24484	24574	36140	36140					-0.012238110439284355
SEKSLENETL	10	Unmodified	_SEKSLENETL_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.2868041992188	2	575.285325	1148.5561	-0.23661	-0.00013612	1.8494	0.0010639	1.6127	0.00092779	575.2866105207419	29.454	0.15579	29.454	29.35	29.506	0					5	3	2	0	0	0	0.3029	1	10897	10897		66.92	15.392	1	145900			35700	1336	24484	24574	36141	36141					-0.012238110439284355
SEKSLENETL	10	Unmodified	_SEKSLENETL_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.2860717773438	2	575.285325	1148.5561	-1.5365	-0.00088391	2.6425	0.0015202	1.1061	0.0006363	575.2867153742707	29.232	0.12503	29.232	29.13	29.255	0					5	3	2	0	0	0	0.06456	1	9805	9805		104.42	30.168	1	86916			35701	1336	24484	24574	36142	36142					-0.012238110439284355
SEKSPIQQL	9	Unmodified	_SEKSPIQQL_					0	0	0			REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF	REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2822875976562	2	515.282389	1028.55022	0.16901	8.7085E-05	0.33607	0.00017317	0.50508	0.00026026	515.2823994898808	25.522	0.15598	25.522	25.492	25.648	0					6	5	2	0	0	0	0.24334	1	7690	7690		56.434	0	1	62295	+		35702	18821	24485	24575	36143	36143					0.03709135235044414
SEKSPIQQL	9	Unmodified	_SEKSPIQQL_					0	0	0			REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF	REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.28125	2	515.282389	1028.55022	-1.5574	-0.00080252	2.2627	0.0011659	0.70524	0.0003634	515.2830226632611	25.643	0.17453	25.643	25.561	25.735	0					9	4	3	0	0	0	0.095583	1	8189	8189		80.455	5.4113	1	86801	+		35703	18821	24485	24575	36144	36144					0.03709135235044414
SEKTILIR	8	Unmodified	_SEKTILIR_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.29766845703125	2	480.297842	958.581131	0.045734	2.1966E-05	-0.33289	-0.00015988	-0.28715	-0.00013792	480.2976469156852	34.106	0.15289	34.106	34.067	34.22	0					9	6	2	0	0	0	0.5535	1	11139	11139		54.776	3.4409	1	62728	+		35704	12909	24486	24576	36145	36145					0.10018333339951369
SEKTILIR	8	Unmodified	_SEKTILIR_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.297607421875	2	480.297842	958.581131	-0.18127	-8.7063E-05	-0.41944	-0.00020146	-0.60071	-0.00028852	480.2977227638269	34.451	0.32906	34.451	34.323	34.652	0					14	8	3	0	0	0	0.39125	1	12839	12839		71.877	0.58177	1	312380	+		35705	12909	24486	24576	36146	36146					0.10018333339951369
SEKTILIR	8	Unmodified	_SEKTILIR_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2975769042969	2	480.297842	958.581131	-0.50048	-0.00024038	-0.1944	-9.3368E-05	-0.69488	-0.00033375	480.2978462516862	34.407	0.20672	34.407	34.323	34.53	0					9	5	2	0	0	0	0.35045	1	13266	13266		76.774	4.8967	1	188720	+		35706	12909	24486	24576	36147	36147					0.10018333339951369
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7904357910156	2	508.790381	1015.56621	0.95628	0.00048655	-0.74878	-0.00038097	0.2075	0.00010558	508.79008639097947	22.631	0.14192	22.631	22.561	22.703	0					9	4	3	0	0	0	0.12278	1	6422	6422		49.536	0	1	124300			35707	3309	24487	24577	36148	36148					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.5291442871094	3	339.529346	1015.56621	0.22567	7.6621E-05	-1.0384	-0.00035258	-0.81277	-0.00027596	339.5288972199553	22.645	0.13932	22.645	22.554	22.694	0					7	4	2	0	0	0	0.4966	1	6432	6432		32.812	1.2826	1	45422			35708	3309	24487	24577	36149	36149					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7903137207031	2	508.790381	1015.56621	0.91729	0.00046671	-0.93376	-0.00047509	-0.01647	-8.3799E-06	508.78993317869526	22.972	0.21681	22.972	22.846	23.063	0					16	5	4	0	0	0	0.064446	1	7531	7531		83.647	32.454	1	1409500			35709	3309	24487	24577	36150	36150					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.529296875	3	339.529346	1015.56621	0.51207	0.00017386	-0.7279	-0.00024714	-0.21583	-7.3281E-05	339.52909439947075	22.966	0.38958	22.966	22.874	23.263	0					17	9	3	0	0	0	0.22837	1	7542	7542		58.23	0	1	906340			35710	3309	24487	24577	36151	36151					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.79052734375	2	508.790381	1015.56621	-0.5442	-0.00027689	0.89089	0.00045328	0.34669	0.00017639	508.79087737938204	22.666	0.13326	22.666	22.596	22.729	0					9	4	3	0	0	0	0.15558	1	6701	6701		42.864	0	1	227050			35711	3309	24487	24577	36152	36152					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.79022216796875	2	508.790381	1015.56621	1.1545	0.0005874	-1.4075	-0.0007161	-0.25295	-0.0001287	508.78970378685125	22.853	0.16685	22.853	22.794	22.961	0					8	3	3	0	0	0	0.085309	1	7808	7808		76.17	19.736	1	1623700			35712	3309	24487	24577	36153	36153					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7913513183594	2	508.790381	1015.56621	0.54372	0.00027664	0.75618	0.00038474	1.2999	0.00066137	508.79067297458687	22.714	0.10221	22.714	22.665	22.767	0					4	2	2	0	0	0	0.21222	1	6822	6822		53.089	13.031	1	75678			35713	3309	24487	24577	36154	36154					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.79095458984375	2	508.790381	1015.56621	0.1502	7.6418E-05	0.44948	0.00022869	0.59968	0.00030511	508.7906042172319	22.742	0.14474	22.742	22.65	22.795	0					8	3	3	0	0	0	0.15593	1	6817	6817		59.931	12.273	1	240330			35714	3309	24487	24577	36155	36155					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.79034423828125	2	508.790381	1015.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.865	1	22.865	22.365	23.365	0								0	0	0	0.0098509	1	7669	7669		93.598	37.164	1				35715	3309	24487	24577	36156	36156					0.059048414719427456
SEKVHVNLL	9	Unmodified	_SEKVHVNLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000149212|P58005-4|SESN3;ENSG00000130766|ENST00000253063|SESN2;ENSG00000149212|ENST00000536441|SESN3	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.8006591796875	2	519.800749	1037.58694	1.4047	0.00073015	-1.2112	-0.00062958	0.19348	0.00010057	519.8000034182147	30.616	0.22856	30.616	30.526	30.754	0					9	5	2	0	0	0	0.19605	1	11070	11070		62.107	14.45	1	256010			35716	1641	24488	24578	36157	36157					0.06965431851631365
SEKVHVNLL	9	Unmodified	_SEKVHVNLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000149212|P58005-4|SESN3;ENSG00000130766|ENST00000253063|SESN2;ENSG00000149212|ENST00000536441|SESN3	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.8007202148438	2	519.800749	1037.58694	1.6162	0.00084009	-1.7385	-0.00090368	-0.12234	-6.3593E-05	519.7997919028874	30.569	0.20593	30.569	30.474	30.68	0					11	4	3	0	0	0	0.11898	1	11345	11345		75.043	38.597	1	428400			35717	1641	24488	24578	36158	36158					0.06965431851631365
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.7530517578125	2	449.753267	897.491981	0.15549	6.9931E-05	-0.62325	-0.00028031	-0.46776	-0.00021038	449.7529429638293	20.774	0.2119	20.774	20.668	20.88	0					9	4	3	0	0	0	0.29286	1	6509	6509		84.916	4.9763	1	1403900			35718	4144	24489	24579	36159	36159					0.03913498380427427
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.75311279296875	2	449.753267	897.491981	0.62684	0.00028192	-1.0345	-0.00046526	-0.40764	-0.00018334	449.7527728503936	20.756	0.20816	20.756	20.655	20.863	0					7	4	2	0	0	0	0.29286	1	6501	6501		84.916	26.134	1	732330			35719	4144	24489	24579	36160	36160					0.03913498380427427
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.7529602050781	2	449.753267	897.491981	-0.097328	-4.3774E-05	-0.55013	-0.00024742	-0.64746	-0.0002912	449.7529830411023	20.687	0.21919	20.687	20.579	20.798	0					11	4	3	0	0	0	0.23527	1	6752	6752		133.81	46.058	1	2796700			35720	4144	24489	24579	36161	36161					0.03913498380427427
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.7533874511719	2	449.753267	897.491981	0.54336	0.00024438	-0.17797	-8.0042E-05	0.36539	0.00016434	449.75319118140357	20.543	0.13883	20.543	20.447	20.586	0					6	3	2	0	0	0	0.27512	1	5786	5786		90.777	22.292	1	256720			35721	4144	24489	24579	36162	36162					0.03913498380427427
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.7529602050781	2	449.753267	897.491981	-0.39901	-0.00017945	-0.063758	-2.8676E-05	-0.46276	-0.00020813	449.7531865386779	20.701	0.41687	20.701	20.591	21.008	0					16	8	4	0	0	0	0.27635	1	6603	6603		90.37	21.583	1	1538200			35722	4144	24489	24579	36163	36163					0.03913498380427427
SEKVSKISL	9	Unmodified	_SEKVSKISL_					0	0	0		KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant;KIF1C|p.K1057Sfs*31|1|0.14|ENSG00000129250|chr17:5024005-5024005|A/-|frameshift_variant;KIF1C|p.Y1081Ifs*15|1|0.28|ENSG00000129250|chr17:5024072-5024073|-/C|frameshift_variant;ENSG00000129250|ENST00000320785|KIF1C	KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7953186035156	2	495.795132	989.575711	0.94812	0.00047007	-0.74948	-0.00037159	0.19864	9.8487E-05	495.7946560270262	25.355	0.21832	25.355	25.196	25.414	0					9	4	3	0	0	0	0.21419	1	8881	8881		59.931	5.2084	1	519010			35723	3589	24490	24580	36164	36164					0.08050609757481197
SELAFQLL	8	Unmodified	_SELAFQLL_					0	0	0			REV__RAD18|p.T371Nfs*9|1|0.08|ENSG00000070950|chr3:8902436-8902437|-/T|frameshift_variant	REV__RAD18|p.T371Nfs*9|1|0.08|ENSG00000070950|chr3:8902436-8902437|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7597351074219	2	460.758018	919.501483	0.81732	0.00037659	1.9486	0.00089784	2.7659	0.0012744	460.75870045344254	40.724	0.12101	40.724	40.686	40.807	0					10	6	2	0	0	0	0.3961	1	15534	15534		71.296	5.4925	1	51033	+		35724	13182	24491	24581	36165	36165					0.03851266665969888
SELEKTFNL	9	Unmodified	_SELEKTFNL_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L;SP140L|p.F492Lfs*17|1|0.46|ENSG00000185404|chr2:230401414-230401414|T/-|frameshift_variant;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7832641601562	2	540.782222	1079.54989	1.9911	0.0010768	0.41946	0.00022683	2.4106	0.0013036	540.7829394448519	41.223	0.12226	41.223	41.162	41.285	0					7	5	2	0	0	0	0.14578	1	16220	16220		68.846	7.1549	1	110060			35725	11433;7078	24492	24582	36166	36166					0.013297155152031337
SELEKTFNL	9	Unmodified	_SELEKTFNL_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L;SP140L|p.F492Lfs*17|1|0.46|ENSG00000185404|chr2:230401414-230401414|T/-|frameshift_variant;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7824096679688	2	540.782222	1079.54989	2.083	0.0011264	-1.3502	-0.00073016	0.73277	0.00039627	540.7819670709086	41.189	0.22304	41.189	41.103	41.326	0					7	5	2	0	0	0	0.14578	1	16360	16360		68.846	11.035	1	143290			35726	11433;7078	24492	24582	36167	36167					0.013297155152031337
SELEKTFNL	9	Unmodified	_SELEKTFNL_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L;SP140L|p.F492Lfs*17|1|0.46|ENSG00000185404|chr2:230401414-230401414|T/-|frameshift_variant;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.78369140625	2	540.782222	1079.54989	3.5027	0.0018942	-3.7126	-0.0020077	-0.20984	-0.00011348	540.7802112447289	41.182	0.17829	41.182	41.091	41.269	0					10	4	3	0	0	0	0.25761	1	16369	16369		54.722	1.7857	1	237200			35727	11433;7078	24492	24582	36168	36168					0.013297155152031337
SELEMAKA	8	Unmodified	_SELEMAKA_					0	0	0		ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.24371337890625	2	439.718036	877.421518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.598	1	24.598	24.098	25.098	0								0	0	0	1.7419	1	8629	8629		71.877	0	1				35728	8077	24493	24583	36169	36169					-0.02209542999560199
SELETAQKL	9	Unmodified	_SELETAQKL_					0	0	0		ENST00000476719.1_1_9:135601077-135753754:-|nuORF;nc|ENSG00000165695|Q96MA6-2|AK8;ENSG00000165695|ENST00000298545|AK8	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.18524169921875	3	340.185356	1017.53424	0.51113	0.00017388	-0.72737	-0.00024744	-0.21624	-7.3562E-05	340.1851303892466	20.188	0.24344	20.188	20.095	20.339	0					12	5	3	0	0	0	0.22377	1	6207	6207		65.465	0	1	1793100			35729	9911	24494	24584	36170	36170					0.026174289981327092
SELFRILK	8	Unmodified	_SELFRILK_					0	0	0		tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.8731994628906	3	335.874565	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.993	1	14.993	14.493	15.493	0								0	0	0	1.7419	1	4010	4010		23.042	1.0826	1				35730	22766	24495	24585	36171	36171					0.09974923719607887
SELHDVMVAL	10	Unmodified	_SELHDVMVAL_					0	0	0			REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.2821655273438	2	557.284074	1112.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.788	1	43.788	43.288	44.288	0								0	0	0	0.37816	1	16484	16484		37.159	8.0096	1		+		35731	12506	24496	24586	36172	36172					0.0018206201741577388
SELHLNTSL	9	Unmodified	_SELHLNTSL_					0	0	0			REV__ENSG00000197323|ENST00000358465|TRIM33	REV__ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2669677734375	2	507.266739	1012.51892	0.092719	4.7034E-05	1.1655	0.00059124	1.2583	0.00063827	507.26739552350597	36.506	0.25418	36.506	36.415	36.669	0					28	12	3	0	0	0	0.36892	1	13054	13054		44.377	7.9304	1	314800	+		35732	17325	24497	24587	36173	36173					0.013165622009523759
SELHSGTLL	9	Unmodified	_SELHSGTLL_					0	0	0			REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7557373046875	2	478.756007	955.497461	-0.45346	-0.00021709	-0.00096125	-4.6021E-07	-0.45442	-0.00021756	478.7560869572856	33.989	0.28304	33.989	33.851	34.134	0					14	6	3	0	0	0	0.26904	1	13047	13047		53.351	0.41475	1	496960	+		35733	20627	24498	24588	36174	36174					0.01793177172248761
SELIKKPSG	9	Unmodified	_SELIKKPSG_					0	0	0		ENST00000588728.5_1_8:8088403-8094732:+|nuORF;ENST00000484945.5_1_3:75472114-75480048:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT	ENST00000588728.5_1_8:8088403-8094732:+|nuORF	ENST00000588728.5_1_8:8088403-8094732:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.78167724609375	2	479.782025	957.549496	-0.20986	-0.00010068	-0.65459	-0.00031406	-0.86445	-0.00041475	479.7819016660021	29.38	0.080059	29.38	29.324	29.404	0					5	3	2	0	0	0	0.27249	1	9560	9560		52.937	3.4952	1	56347			35734	10003	24499	24589	36175	36175					0.06902340586009359
SELILLQKV	9	Unmodified	_SELILLQKV_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.829345703125	2	521.828975	1041.6434	3.3916	0.0017698	-2.8732	-0.0014993	0.51839	0.00027051	521.8275892402821	45.917	0.12796	45.917	45.861	45.988	0					8	6	2	0	0	0	0.10915	1	18396	18396		77.318	15.21	1	104140			35735	4070	24500	24590	36176	36176					0.12424059688282796
SELIRNVTL	9	Unmodified	_SELIRNVTL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000589825.5_1_17:42960950-42971889:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8062133789062	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.439	1	39.439	38.939	39.939	0								0	0	0	0.11159	1	15513	15513		68.846	12.214	1				35736	2556	24501	24591	36177	36177					0.07745414506052839
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7580871582031	2	430.758018	859.501483	0.17094	7.3634E-05	-0.7244	-0.00031204	-0.55346	-0.00023841	430.7577369379354	29.099	0.22232	29.099	29.024	29.247	0					20	8	3	0	0	0	0.41	1	9134	9134		69.628	5.4204	1	564020			35737	7222;6080;3386;7010	24502	24592	36178	36178					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7580261230469	2	430.758018	859.501483	0.77879	0.00033547	-1.3937	-0.00060036	-0.61495	-0.0002649	430.75749865556287	29.409	0.38106	29.409	29.285	29.666	0					28	9	4	0	0	0	0.27635	1	10473	10473		90.37	10.657	1	3676000			35738	7222;6080;3386;7010	24502	24592	36179	36179					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.7578125	2	430.758018	859.501483	-0.85071	-0.00036645	0.041528	1.7889E-05	-0.80918	-0.00034856	430.7580838256446	29.111	0.30455	29.111	29.058	29.362	0					24	12	3	0	0	0	0.41	1	9453	9453		69.628	5.4204	1	629870			35739	7222;6080;3386;7010	24502	24592	36180	36180					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7580871582031	2	430.758018	859.501483	-0.49739	-0.00021425	0.10629	4.5786E-05	-0.3911	-0.00016847	430.75807625133297	29.388	0.28672	29.388	29.295	29.582	0					14	6	3	0	0	0	0.27635	1	10864	10864		90.37	2.6734	1	921450			35740	7222;6080;3386;7010	24502	24592	36181	36181					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.75775146484375	2	430.758018	859.501483	0.97311	0.00041917	-1.9407	-0.00083598	-0.96762	-0.00041681	430.7572319403633	29.375	0.33347	29.375	29.282	29.616	0					17	7	3	0	0	0	0.41	1	10877	10877		69.628	0	1	3257300			35741	7222;6080;3386;7010	24502	24592	36182	36182					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7583923339844	2	430.758018	859.501483	0.19373	8.3449E-05	0.24507	0.00010556	0.43879	0.00018901	430.75816945777666	29.189	0.23209	29.189	29.094	29.326	0					14	6	3	0	0	0	0.41	1	9764	9764		69.628	9.5094	1	311780			35742	7222;6080;3386;7010	24502	24592	36183	36183					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7576904296875	2	430.758018	859.501483	-0.35214	-0.00015169	-0.11426	-4.9218E-05	-0.46639	-0.0002009	430.7579943045357	29.173	0.26432	29.173	29.086	29.351	0					16	7	4	0	0	0	0.39125	1	9758	9758		71.877	5.4482	1	830180			35743	7222;6080;3386;7010	24502	24592	36184	36184					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.75799560546875	2	430.758018	859.501483	-0.45806	-0.00019731	0.19002	8.1855E-05	-0.26804	-0.00011546	430.7580745155031	29.315	0.35908	29.315	29.207	29.566	0					15	7	3	0	0	0	0.41	1	10711	10711		69.628	5.4204	1	3237600			35744	7222;6080;3386;7010	24502	24592	36185	36185					0.06611266665959192
SELITKAVA	9	Unmodified	_SELITKAVA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2763977050781	2	466.276575	930.538597	-0.92007	-0.00042901	0.55929	0.00026078	-0.36078	-0.00016822	466.2769375474429	28.824	0.22563	28.824	28.741	28.966	0					14	8	3	0	0	0	0.25761	1	9323	9323		54.722	3.5297	1	249560			35745	7222;6080;3386;7010	24503	24593	36186	36186					0.07054938211717854
SELITKAVA	9	Unmodified	_SELITKAVA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2764892578125	2	466.276575	930.538597	0.66372	0.00030948	-0.51338	-0.00023937	0.15034	7.0101E-05	466.27635707755826	29.062	0.37417	29.062	28.96	29.334	0					20	8	4	0	0	0	0.19952	1	10734	10734		61.691	3.4614	1	1170100			35746	7222;6080;3386;7010	24503	24593	36187	36187					0.07054938211717854
SELITKAVA	9	Unmodified	_SELITKAVA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2765808105469	2	466.276575	930.538597	-0.62463	-0.00029125	0.92257	0.00043017	0.29794	0.00013892	466.2770716645628	28.855	0.18564	28.855	28.75	28.936	0					9	4	3	0	0	0	0.15558	1	9642	9642		66.962	1.4965	1	136760			35747	7222;6080;3386;7010	24503	24593	36188	36188					0.07054938211717854
SELITKAVA	9	Unmodified	_SELITKAVA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2764587402344	2	466.276575	930.538597	-2.2642	-0.0010558	2.3093	0.0010768	0.045044	2.1003E-05	466.27770803739406	28.832	0.18629	28.832	28.78	28.967	0					6	4	2	0	0	0	0.12834	1	9631	9631		72.879	1.0018	1	108770			35748	7222;6080;3386;7010	24503	24593	36189	36189					0.07054938211717854
SELITKAVAA	10	Unmodified	_SELITKAVAA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.794921875	2	501.795132	1001.57571	0.69376	0.00034813	-1.0156	-0.00050961	-0.32182	-0.00016149	501.7946053197834	30.706	0.1039	30.706	30.61	30.714	0					6	2	3	0	0	0	0.31894	1	11096	11096		65.157	7.346	1	393750			35749	7222;6080;3386;7010	24504	24594	36190	36190					0.07498609757465147
SELITKAVAA	10	Unmodified	_SELITKAVAA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7945556640625	2	501.795132	1001.57571	-0.94756	-0.00047548	-0.42993	-0.00021574	-1.3775	-0.00069122	501.7948925219379	30.449	0.097057	30.449	30.383	30.48	0					6	3	2	0	0	0	0.36647	1	9998	9998		59.931	5.1661	1	145810			35750	7222;6080;3386;7010	24504	24594	36191	36191					0.07498609757465147
SELITKAVAA	10	Unmodified	_SELITKAVAA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7949523925781	2	501.795132	1001.57571	0.14327	7.1894E-05	-0.19733	-9.9021E-05	-0.05406	-2.7127E-05	501.79470236731134	30.434	0.093735	30.434	30.386	30.48	0					4	2	2	0	0	0	0.36647	1	10375	10375		59.931	11.971	1	78937			35751	7222;6080;3386;7010	24504	24594	36192	36192					0.07498609757465147
SELKVVSL	8	Unmodified	_SELKVVSL_					0	0	0			REV__RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant	REV__RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.76605224609375	2	437.765843	873.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.413	1	38.413	37.913	38.913	0								0	0	0	1.7419	1	15070	15070		60.972	2.19	1		+		35752	14175	24505	24595	36193	36193					0.0753155318300287
SELLAQTL	8	Unmodified	_SELLAQTL_					0	0	0			REV__ENST00000397128.6_1_5:40760712-40760853:-|nuORF	REV__ENST00000397128.6_1_5:40760712-40760853:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7475280761719	2	437.74765	873.480748	0.25005	0.00010946	-0.42246	-0.00018493	-0.17241	-7.5473E-05	437.7474291082499	28.756	0.26258	28.756	28.661	28.923	0					21	9	3	0	0	0	0.27635	1	8985	8985		90.37	0	1	752360	+		35753	18908	24506	24596	36194	36194					0.03894676286279264
SELLAYLAAY	10	Unmodified	_SELLAYLAAY_					0	0	0		nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2949829101562	2	557.294965	1112.57538	3.4948	0.0019476	-2.8221	-0.0015727	0.67272	0.0003749	557.2936208247844	35.808	0.3608	35.808	35.603	35.963	0					12	7	3	0	0	0	0.4943	1	13872	13872		45.952	6.6991	1	415760			35754	11719	24507	24597	36195	36195					0.02359190037600456
SELLEPVCH	9	Unmodified	_SELLEPVCH_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7498168945312	2	513.749867	1025.48518	-0.47519	-0.00024413	0.3251	0.00016702	-0.1501	-7.7113E-05	513.7499413909796	35.487	0.3723	35.487	35.304	35.676	0					14	7	3	0	0	0	0.45358	1	13762	13762		37.159	0	1	208270			35755	3274	24508	24598	36196	36196					-0.026541825624462945
SELLITKA	8	Unmodified	_SELLITKA_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7654724121094	2	437.765843	873.517133	0.61397	0.00026877	-1.3494	-0.00059073	-0.73545	-0.00032195	437.76506016436304	32.023	0.17206	32.023	31.938	32.111	0					7	4	2	0	0	0	0.34592	1	11727	11727		77.318	5.4401	1	163330			35756	7501	24509	24599	36197	36197					0.07531553182980133
SELLITKA	8	Unmodified	_SELLITKA_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7654724121094	2	437.765843	873.517133	0.70407	0.00030822	-1.2429	-0.00054408	-0.5388	-0.00023587	437.7650699120894	31.982	0.20033	31.982	31.894	32.095	0					8	4	3	0	0	0	0.28444	1	12114	12114		87.696	5.4559	1	249350			35757	7501	24509	24599	36198	36198					0.07531553182980133
SELLKRTAL	9	Unmodified	_SELLKRTAL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8164672851562	2	515.816399	1029.61824	0.03235	1.6687E-05	0.035926	1.8531E-05	0.068276	3.5218E-05	515.8164367534629	28.002	0.25922	28.002	27.862	28.121	0					10	6	2	0	0	0	0.07136	1	9853	9853		87.696	5.4559	1	596110			35758	2948	24510	24600	36199	36199					0.10462004885698661
SELLKRTAL	9	Unmodified	_SELLKRTAL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.8165893554688	2	515.816399	1029.61824	1.4364	0.0007409	-1.1282	-0.00058194	0.30817	0.00015896	515.8160011908502	28.004	0.34333	28.004	27.798	28.141	0					14	7	3	0	0	0	0.085655	1	10225	10225		82.75	8.4954	1	533000			35759	2948	24510	24600	36200	36200					0.10462004885698661
SELLLHQKV	9	Unmodified	_SELLLHQKV_					0	0	0		ENSG00000102870|ENST00000262525|ZNF629	ENSG00000102870|ENST00000262525|ZNF629	ENSG00000102870|ENST00000262525|ZNF629	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8170776367188	2	533.816399	1065.61824	0.28985	0.00015472	0.84405	0.00045057	1.1339	0.00060529	533.8167609621213	28.037	0.14641	28.037	27.98	28.126	0					5	3	2	0	0	0	0.048471	1	10234	10234		95.815	16.103	1	139000			35760	2194	24511	24601	36201	36201					0.08806004885695984
SELLLTAK	8	Unmodified	_SELLLTAK_					0	0	0			REV__nc|ENSG00000165525|O60524-4|NEMF;REV__CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant	REV__CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.76568603515625	2	437.765843	873.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.779	1	31.779	31.279	32.279	0								0	0	0	1.7419	1	10559	10559		62.107	1.9892	1		+		35761	16049;12408	24512	24602	36202	36202					0.07531553182980133
SELLLYSSHQ	10	Unmodified	_SELLLYSSHQ_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.8683776855469	3	392.868027	1175.58225	0.8863	0.0003482	-0.20017	-7.864E-05	0.68613	0.00026956	392.867982264999	17.108	1.5534	17.108	17.018	18.571	0					66	37	2	0	0	0	0.2538	1	4762	4762		72.879	17.795	1	12556000			35762	5010	24513	24603	36203	36203					0.0014850291818220285
SELLTKLQ	8	Unmodified	_SELLTKLQ_					0	0	0		nc|ENSG00000170703|Q8N841-2|TTLL6;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2766418457031	2	466.276575	930.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.877	1	28.877	28.377	29.377	0								0	0	0	1.7419	1	9644	9644		60.118	0.18749	1				35763	6254	24514	24604	36204	36204					0.07054938211717854
SELLVVKM	8	Unmodified	_SELLVVKM_					0	0	0		ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;OBSL1-MRPL2|1|fusion	ENST00000465149.1_1_2:220420747-220435459:-|nuORF;OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7694396972656	2	459.770071	917.52559	0.72212	0.00033201	0.59552	0.0002738	1.3176	0.00060581	459.7702320878482	41.633	0.1522	41.633	41.537	41.689	0					8	6	2	0	0	0	0.51384	1	16374	16374		58.782	25.266	1	39546			35764	11869;3341	24515	24605	36205	36205					0.06352783827981057
SELLVVKM	8	Unmodified	_SELLVVKM_					0	0	0		ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;OBSL1-MRPL2|1|fusion	ENST00000465149.1_1_2:220420747-220435459:-|nuORF;OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7701416015625	2	459.770071	917.52559	2.527	0.0011618	-2.1521	-0.00098947	0.37489	0.00017236	459.7691882979233	41.592	0.12806	41.592	41.506	41.634	0					6	3	2	0	0	0	0.64144	1	16563	16563		42.396	3.59	1	56213			35765	11869;3341	24515	24605	36206	36206					0.06352783827981057
SELPAKRL	8	Unmodified	_SELPAKRL_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.27667236328125	2	457.276909	912.539266	-0.15	-6.8593E-05	-0.71881	-0.00032869	-0.86881	-0.00039729	457.27669311724236	21.892	0.31056	21.892	21.776	22.086	0					14	6	3	0	0	0	0.41952	1	7336	7336		68.485	5.1784	1	691990			35766	544	24516	24606	36207	36207					0.07949777651424483
SELPAKRL	8	Unmodified	_SELPAKRL_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.27679443359375	2	457.276909	912.539266	0.049199	2.2497E-05	-0.21625	-9.8885E-05	-0.16705	-7.6387E-05	457.2768155047418	21.743	0.15157	21.743	21.685	21.837	0					5	3	2	0	0	0	0.7126	1	6367	6367		31.955	0	1	65077			35767	544	24516	24606	36208	36208					0.07949777651424483
SELPQDPQ	8	Unmodified	_SELPQDPQ_					0	0	0		PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant	PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant	PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2164611816406	2	457.216714	912.418876	-0.43484	-0.00019881	-0.08707	-3.981E-05	-0.52191	-0.00023862	457.21660819194443	20.003	0.31688	20.003	19.842	20.159	0					13	6	3	0	0	0	0.32815	1	6290	6290		79.451	2.6769	1	526030			35768	11962	24517	24607	36209	36209					-0.04083675132858389
SELQDSNPEF	10	Unmodified	_SELQDSNPEF_					0	0	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.252685546875	2	583.254025	1164.4935	1.6174	0.00094336	-2.7438	-0.0016004	-1.1264	-0.000657	583.2525598759289	36.975	0.25674	36.975	36.863	37.12	0					12	5	3	0	0	0	0.50881	1	14428	14428		44.377	1.5129	1	127700			35769	3357	24518	24608	36210	36210					-0.0821695711213124
SELQSIQRL	9	Unmodified	_SELQSIQRL_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3015747070312	2	537.301113	1072.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.934	1	35.934	35.434	36.434	0								0	0	0	0.10319	1	13961	13961		70.816	17.88	1				35770	3968	24519	24609	36211	36211					0.05428226500657729
SELRAPPVI	9	Unmodified	_SELRAPPVI_					0	0	0		ENST00000481257.5_3_19:36501646-36504244:-|nuORF	ENST00000481257.5_3_19:36501646-36504244:-|nuORF	ENST00000481257.5_3_19:36501646-36504244:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.8622741699219	3	327.862437	980.565481	0.55072	0.00018056	-1.393	-0.00045672	-0.8423	-0.00027616	327.8619893454314	25.909	0.24963	25.909	25.817	26.067	0					9	4	3	0	0	0	0.50461	1	9222	9222		47.657	17.34	1	207090			35771	9956	24520	24610	36212	36212					0.07442046822893644
SELRFTQL	8	Unmodified	_SELRFTQL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000558383.1_1_15:45393877-45400429:-|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2716064453125	2	497.271824	992.529095	-0.30402	-0.00015118	0.19526	9.7097E-05	-0.10876	-5.4083E-05	497.27190931576087	40.427	0.24627	40.427	40.348	40.595	0					23	9	4	0	0	0	0.29212	1	15408	15408		85.161	13.865	1	295110			35772	4374;4202	24521	24611	36213	36213					0.03253169926199462
SELRFTQL	8	Unmodified	_SELRFTQL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000558383.1_1_15:45393877-45400429:-|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2718811035156	2	497.271824	992.529095	0.78354	0.00038963	-0.66118	-0.00032878	0.12236	6.0847E-05	497.27148207275394	40.393	0.3021	40.393	40.295	40.597	0					27	12	4	0	0	0	0.24383	1	15907	15907		112.41	9.6376	1	896250			35773	4374;4202	24521	24611	36214	36214					0.03253169926199462
SELRFTQL	8	Unmodified	_SELRFTQL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000558383.1_1_15:45393877-45400429:-|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.271484375	2	497.271824	992.529095	-2.3017	-0.0011446	2.5678	0.0012769	0.26613	0.00013234	497.2732862639644	40.192	0.2052	40.192	40.09	40.295	0					18	10	2	0	0	0	0.46013	1	14282	14282		64.207	5.4253	1	80288			35774	4374;4202	24521	24611	36215	36215					0.03253169926199462
SELSDLGVLA	10	Unmodified	_SELSDLGVLA_					0	0	0			REV__ENSG00000175928|ENST00000319331|LRRN1	REV__ENSG00000175928|ENST00000319331|LRRN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.18206787109375	3	335.181723	1002.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.114	1	20.114	19.614	20.614	0								0	0	0	0.40002	1	6469	6469		28.081	0	1		+		35775	16637	24522	24612	36216	36216					0.022180266238592594
SELTQPKL	8	Unmodified	_SELTQPKL_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.26043701171875	2	458.260925	914.507297	-0.40941	-0.00018762	-0.73671	-0.0003376	-1.1461	-0.00052522	458.26053261323585	30.388	0.35382	30.388	30.217	30.571	0					23	12	3	0	0	0	0.39125	1	9641	9641		71.877	16.983	1	130240			35776	7478	24523	24613	36217	36217					0.04662365177614447
SELTQPKL	8	Unmodified	_SELTQPKL_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.26116943359375	2	458.260925	914.507297	-0.64461	-0.0002954	-0.45227	-0.00020726	-1.0969	-0.00050266	458.2604948838075	30.649	0.52147	30.649	30.394	30.916	0					26	12	3	0	0	0	0.25798	1	11060	11060		139.97	38.37	1	687540			35777	7478	24523	24613	36218	36218					0.04662365177614447
SELTQPKL	8	Unmodified	_SELTQPKL_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2607421875	2	458.260925	914.507297	-0.98679	-0.00045221	0.21174	9.7031E-05	-0.77506	-0.00035518	458.2610207440863	30.427	0.43651	30.427	30.214	30.651	0					23	14	2	0	0	0	0.5535	1	9970	9970		54.776	10.399	1	276530			35778	7478	24523	24613	36219	36219					0.04662365177614447
SELTQPKL	8	Unmodified	_SELTQPKL_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2605895996094	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.616	1	30.616	30.116	31.116	0								0	0	0	1.7419	1	11462	11462		122.18	37.26	1				35779	7478	24523	24613	36220	36220					0.04662365177614447
SELTQPKL	8	Unmodified	_SELTQPKL_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2610168457031	2	458.260925	914.507297	0.13244	6.0691E-05	-0.64037	-0.00029346	-0.50793	-0.00023277	458.2605747137346	30.434	0.26573	30.434	30.251	30.517	0					10	6	2	0	0	0	0.2498	1	10356	10356		101.6	35.171	1	108160			35780	7478	24523	24613	36221	36221					0.04662365177614447
SELTQPKL	8	Unmodified	_SELTQPKL_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2607116699219	2	458.260925	914.507297	-2.6377	-0.0012087	4.3159	0.0019778	1.6783	0.00076908	458.2617246411988	30.451	0.44505	30.451	30.243	30.688	0					33	11	4	0	0	0	0.37144	1	10348	10348		74.255	4.6274	1	311470			35781	7478	24523	24613	36222	36222					0.04662365177614447
SELTQPKL	8	Unmodified	_SELTQPKL_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2607727050781	2	458.260925	914.507297	2.5029	0.001147	-3.6502	-0.0016727	-1.1473	-0.00052576	458.2593434240082	30.603	0.60423	30.603	30.261	30.865	0					21	12	2	0	0	0	0.072348	1	11336	11336		161.9	41.277	1	1349600			35782	7478	24523	24613	36223	36223					0.04662365177614447
SELVLTRL	8	Unmodified	_SELVLTRL_					0	0	0		nc|ENSG00000118162|Q9Y664-2|KPTN;ENSG00000118162|ENST00000338134|KPTN	nc|ENSG00000118162|Q9Y664-2|KPTN	nc|ENSG00000118162|Q9Y664-2|KPTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.78448486328125	2	465.784567	929.554582	2.6249	0.0012226	-4.4037	-0.0020512	-1.7789	-0.00082856	465.7832142149639	41.392	0.42756	41.392	41.091	41.518	0					21	10	3	0	0	0	0.42778	1	16473	16473		67.494	3.2864	1	183320			35783	3066	24524	24614	36224	36224					0.08698644448600135
SELVQKAKL	9	Unmodified	_SELVQKAKL_					0	0	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.3109130859375	2	508.310949	1014.60735	-0.098297	-4.9965E-05	-0.42627	-0.00021668	-0.52457	-0.00026665	508.3106954088406	24.147	0.14049	24.147	24.052	24.193	0					9	4	3	0	0	0	0.063171	1	7084	7084		84.916	27.463	1	165900			35784	5946	24525	24615	36225	36225					0.10062602511413843
SELVQKAKL	9	Unmodified	_SELVQKAKL_					0	0	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.310791015625	2	508.310949	1014.60735	-0.025525	-1.2975E-05	-0.37656	-0.00019141	-0.40209	-0.00020439	508.3106786075089	24.446	0.2328	24.446	24.34	24.573	0					13	5	3	0	0	0	0.015992	1	8240	8240		136.27	29.261	1	1058700			35785	5946	24525	24615	36226	36226					0.10062602511413843
SELVQKAKL	9	Unmodified	_SELVQKAKL_					0	0	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3103332519531	2	508.310949	1014.60735	-0.57639	-0.00029298	0.15341	7.7982E-05	-0.42297	-0.000215	508.3111323137416	24.185	0.16877	24.185	24.089	24.258	0					10	5	3	0	0	0	0.037712	1	7362	7362		107.01	19.311	1	215640			35786	5946	24525	24615	36227	36227					0.10062602511413843
SELVQKAKL	9	Unmodified	_SELVQKAKL_					0	0	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3107604980469	2	508.310949	1014.60735	1.1412	0.00058009	-1.6807	-0.0008543	-0.53946	-0.00027421	508.3100408113955	24.402	0.3145	24.402	24.196	24.511	0					10	6	3	0	0	0	0.035106	1	8551	8551		98.629	38.699	1	1508100			35787	5946	24525	24615	36228	36228					0.10062602511413843
SELVQKAKL	9	Unmodified	_SELVQKAKL_					0	0	0		ENSG00000166913|ENST00000353703|YWHAB;nc|ENSG00000166913|P31946-2|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.2097473144531	3	339.209725	1014.60735	0.5303	0.00017988	-0.44185	-0.00014988	0.088449	3.0003E-05	339.20954526889886	24.385	0.21556	24.385	24.278	24.494	0					10	4	3	0	0	0	0.098791	1	8539	8539		79.713	10.085	1	1152500			35788	5946	24525	24615	36229	36229					0.10062602511413843
SELVRLTVV	9	Unmodified	_SELVRLTVV_					0	0	0			REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.2096862792969	3	339.209725	1014.60735	3.0195	0.0010242	-4.2955	-0.0014571	-1.276	-0.00043284	339.2085975851087	24.355	0.21727	24.355	24.246	24.463	0					10	4	4	0	0	0	0.40353	1	8404	8404		41.427	0.64845	1	821370	+		35789	15748	24526	24616	36230	36230					0.10062602511413843
SELYIRKV	8	Unmodified	_SELYIRKV_					0	0	0		tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1	tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1	tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.01	1	34.01	33.51	34.51	0								0	0	0	1.7419	1	12990	12990		21.96	0	1				35790	22617	24527	24617	36231	36231					0.07810333339944009
SEMAVAHAL	9	Unmodified	_SEMAVAHAL_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.73065185546875	2	464.731477	927.448402	0.54909	0.00025518	-2.0837	-0.00096835	-1.5346	-0.00071317	464.73032030509034	31.576	0.17811	31.576	31.49	31.668	0					6	4	2	0	0	0	0.11118	1	11524	11524		76.847	36.068	1	197040			35791	5559	24528	24618	36232	36232					-0.0182243438837304
SEMCKVVFA	9	Unmodified	_SEMCKVVFA_					0	0	0		MTTP|p.N874K|1|0.16|ENSG00000138823|chr4:99622785-99622785|C/A|missense_variant;ENSG00000138823|ENST00000265517|MTTP	MTTP|p.N874K|1|0.16|ENSG00000138823|chr4:99622785-99622785|C/A|missense_variant	MTTP|p.N874K|1|0.16|ENSG00000138823|chr4:99622785-99622785|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.4981384277344	3	338.498001	1012.47217	1.4826	0.00050187	-1.0288	-0.00034824	0.45384	0.00015362	338.49757655219133	22.358	0.26467	22.358	22.253	22.518	0					11	5	3	0	0	0	0.41113	1	7547	7547		40.778	6.8565	1	792340			35792	4296	24529	24619	36233	36233					-0.0335633694619446
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2396240234375	2	522.239332	1042.46411	1.7827	0.00093098	-1.1259	-0.00058797	0.65682	0.00034302	522.2387034509717	35.218	0.25614	35.218	35.102	35.359	0					12	7	2	0	0	0	0.21263	1	13626	13626		60.118	17.722	1	411210			35793	4262	24530	24620	36234	36234					-0.055421926619601436
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2392578125	2	522.239332	1042.46411	-1.3099	-0.0006841	1.3752	0.00071816	0.065227	3.4064E-05	522.2400983197545	34.96	0.14642	34.96	34.909	35.055	0					7	4	2	0	0	0	0.19605	1	12418	12418		62.107	4.6548	1	72477			35794	4262	24530	24620	36235	36235					-0.055421926619601436
SEMKCALRLRE	11	Unmodified	_SEMKCALRLRE_					0	0	0			REV__ENST00000604957.1_2_X:101857073-101857160:+|nuORF	REV__ENST00000604957.1_2_X:101857073-101857160:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	668.3489379882812	2	668.347214	1334.67988	2.5612	0.0017117	-0.25913	-0.00017319	2.302	0.0015386	668.3470761815908	34.368	0.35912	34.368	34.261	34.62	0					16	7	4	0	0	0	0.32407	1	13180	13180		59.931	11.329	1	1003400	+		35795	20612	24531	24621	36236	36236					0.025922452510258154
SEMKLSVNA	9	Unmodified	_SEMKLSVNA_					0	0	0		ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	ENST00000440787.5_1_3:9845376-9847896:+|nuORF	ENST00000440787.5_1_3:9845376-9847896:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.7497253417969	2	489.749867	977.485181	0.79733	0.00039049	-1.2115	-0.00059332	-0.41415	-0.00020283	489.7494459405684	30.408	0.30033	30.408	30.324	30.624	0					16	7	3	0	0	0	0.14578	1	10971	10971		68.846	7.1549	1	633790			35796	7940	24532	24622	36237	36237					-0.004461825624503035
SEMKLSVNA	9	Unmodified	_SEMKLSVNA_					0	0	0		ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	ENST00000440787.5_1_3:9845376-9847896:+|nuORF	ENST00000440787.5_1_3:9845376-9847896:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7497863769531	2	489.749867	977.485181	-0.52867	-0.00025892	0.12695	6.2173E-05	-0.40172	-0.00019674	489.7501386811196	30.351	0.21242	30.351	30.245	30.458	0					10	4	3	0	0	0	0.082776	1	11237	11237		83.647	12.831	1	482710			35797	7940	24532	24622	36238	36238					-0.004461825624503035
SEMKLSVNA	9	Unmodified	_SEMKLSVNA_					0	0	0		ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	ENST00000440787.5_1_3:9845376-9847896:+|nuORF	ENST00000440787.5_1_3:9845376-9847896:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7496032714844	2	489.749867	977.485181	0.77259	0.00037837	-1.8046	-0.00088381	-1.032	-0.00050544	489.74926091323266	30.336	0.34872	30.336	30.18	30.529	0					16	7	4	0	0	0	0.054723	1	11231	11231		93.598	13.143	1	579800			35798	7940	24532	24622	36239	36239					-0.004461825624503035
SEMKLVQM	8	Unmodified	_SEMKLVQM_					0	0	0		MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant;MED24|p.E720Gfs*14|1|0.41|ENSG00000008838|chr17:40023224-40023225|-/A|frameshift_variant;MED24|p.P805Rfs*53|1|0.29|ENSG00000008838|chr17:40022663-40022663|G/-|frameshift_variant;nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;THRA-MED24|1|fusion	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2437438964844	2	483.243363	964.472174	0.032115	1.5519E-05	-0.62138	-0.00030028	-0.58926	-0.00028476	483.243515812419	35.721	0.13696	35.721	35.651	35.788	0					15	6	3	0	0	0	0.39125	1	11706	11706		71.877	29.481	1	131100			35799	1022	24533	24623	36240	36240					-0.01148336946175732
SEMKLVQM	8	Unmodified	_SEMKLVQM_					0	0	0		MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant;MED24|p.E720Gfs*14|1|0.41|ENSG00000008838|chr17:40023224-40023225|-/A|frameshift_variant;MED24|p.P805Rfs*53|1|0.29|ENSG00000008838|chr17:40022663-40022663|G/-|frameshift_variant;nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;THRA-MED24|1|fusion	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2435607910156	2	483.243363	964.472174	0.59695	0.00028847	-1.8011	-0.00087037	-1.2042	-0.0005819	483.242915381963	36.009	0.39297	36.009	35.829	36.222	0					27	10	4	0	0	0	0.24328	1	13546	13546		113.41	36.565	1	726920			35800	1022	24533	24623	36241	36241					-0.01148336946175732
SEMKLVQM	8	Unmodified	_SEMKLVQM_					0	0	0		MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant;MED24|p.E720Gfs*14|1|0.41|ENSG00000008838|chr17:40023224-40023225|-/A|frameshift_variant;MED24|p.P805Rfs*53|1|0.29|ENSG00000008838|chr17:40022663-40022663|G/-|frameshift_variant;nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;THRA-MED24|1|fusion	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.24359130859375	2	483.243363	964.472174	-0.60117	-0.00029051	0.080571	3.8935E-05	-0.5206	-0.00025158	483.2434509986475	35.94	0.2656	35.94	35.833	36.098	0					8	5	2	0	0	0	0.25102	1	13910	13910		99.375	30.89	1	197150			35801	1022	24533	24623	36242	36242					-0.01148336946175732
SEMKLVQM	8	Unmodified	_SEMKLVQM_					0	0	0		MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant;MED24|p.E720Gfs*14|1|0.41|ENSG00000008838|chr17:40023224-40023225|-/A|frameshift_variant;MED24|p.P805Rfs*53|1|0.29|ENSG00000008838|chr17:40022663-40022663|G/-|frameshift_variant;nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;THRA-MED24|1|fusion	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2429504394531	2	483.243363	964.472174	0.87978	0.00042515	-2.4084	-0.0011639	-1.5287	-0.00073872	483.24250878320925	35.923	0.31566	35.923	35.817	36.132	0					16	6	3	0	0	0	0.48092	1	13902	13902		62.107	1.1355	1	1273400			35802	1022	24533	24623	36243	36243					-0.01148336946175732
SEMLLEMLPQ	10	Unmodified	_SEMLLEMLPQ_					0	0	0			REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.7913208007812	2	595.793417	1189.57228	0.080288	4.7835E-05	-4.017	-0.0023933	-3.9367	-0.0023455	595.7914197356989	21.947	0.16367	21.947	21.842	22.005	0					8	3	3	0	0	0	0.70877	1	7367	7367		20.947	0.10978	1	199300	+		35803	13967	24534	24624	36244	36244					-0.014921444030505882
SEMPSLVLLA	10	Unmodified	_SEMPSLVLLA_					0	0	0		tr|U7T466|U7T466_FUSNURestrictionendonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00272PE=4SV=1	tr|U7T466|U7T466_FUSNURestrictionendonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00272PE=4SV=1	tr|U7T466|U7T466_FUSNURestrictionendonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00272PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.86456298828125	3	353.863337	1058.56818	3.0431	0.0010768	0.51163	0.00018105	3.5547	0.0012579	353.8635231641589	16.574	0.26686	16.574	16.367	16.634	0					15	5	4	0	0	0	0.52707	1	4604	4604		54.722	1.7857	1	3099400			35804	22983	24535	24625	36245	36245					0.041241341655450015
SEMRAPPAA	9	Unmodified	_SEMRAPPAA_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF;ENST00000531368.1_1_17:42286674-42287095:-|nuORF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.23016357421875	2	465.229102	928.443651	-0.51588	-0.00024	2.284	0.0010626	1.7682	0.0008226	465.2304781894696	21.44	0.19413	21.44	21.39	21.584	0					7	4	2	0	0	0	0.33044	1	6231	6231		47.657	7.5992	1	48002			35805	2523	24536	24626	36246	36246					-0.023433185311318994
SEMVTIKL	8	Unmodified	_SEMVTIKL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.75909423828125	2	460.759704	919.504854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.048	1	41.048	40.548	41.548	0								0	0	0	1.7419	1	16140	16140		104.75	13.97	1				35806	3354	24537	24627	36247	36247					0.0418819344830581
SEMVTIKL	8	Unmodified	_SEMVTIKL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7605895996094	2	460.759704	919.504854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.098	1	41.098	40.598	41.598	0								0	0	0	1.7419	1	16159	16159		66.429	10.925	1				35807	3354	24537	24627	36248	36248					0.0418819344830581
SEMVTIKL	8	Unmodified	_SEMVTIKL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.75970458984375	2	460.759704	919.504854	0.85478	0.00039385	-1.8871	-0.00086948	-1.0323	-0.00047563	460.7590399945896	41.049	0.18871	41.049	40.926	41.115	0					7	4	2	0	0	0	0.51384	1	16304	16304		58.782	5.4305	1	69192			35808	3354	24537	24627	36249	36249					0.0418819344830581
SENAIVWKI	9	Unmodified	_SENAIVWKI_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2957763671875	2	530.295299	1058.57605	0.1158	6.1407E-05	0.31679	0.00016799	0.43259	0.0002294	530.2953808910818	44.78	0.17424	44.78	44.699	44.874	0					16	10	2	0	0	0	0.16806	1	16738	16738		65.465	12.529	1	95996			35809	177	24538	24628	36250	36250					0.049100294773325004
SENAIVWKI	9	Unmodified	_SENAIVWKI_					0	0	0		AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7979125976562	2	530.295299	1058.57605	1.7305	0.00091768	0.08274	4.3877E-05	1.8132	0.00096156	530.2953477048276	44.752	0.14124	44.752	44.677	44.819	0					14	8	2	0	0	0	0.15163	1	17382	17382		67.494	21.521	1	88358			35810	177	24538	24628	36251	36251					0.049100294773325004
SENEKLQKL	9	Unmodified	_SENEKLQKL_					0	0	0		ENSG00000088808|ENST00000202556|PPP1R13B;PPP1R13B|p.L233Ffs*4|1|0.31|ENSG00000088808|chr14:103753129-103753130|-/A|frameshift_variant	ENSG00000088808|ENST00000202556|PPP1R13B	ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8017578125	2	544.800946	1087.58734	0.38185	0.00020803	0.97612	0.00053179	1.358	0.00073982	544.8013383889406	21.388	0.27158	21.388	21.247	21.518	0					12	6	3	0	0	0	0.067603	1	6799	6799		82.75	20.643	1	372820			35811	1783	24539	24629	36252	36252					0.04704806780796389
SENINAVTL	9	Unmodified	_SENINAVTL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7530822753906	2	480.753464	959.492375	0.67935	0.0003266	-1.7064	-0.00082037	-1.0271	-0.00049377	480.75267252231004	40.955	0.28107	40.955	40.804	41.085	0					14	7	3	0	0	0	0.11411	1	16107	16107		76.17	4.2922	1	236590			35812	4631	24540	24630	36253	36253					0.011008733096218748
SENINAVTL	9	Unmodified	_SENINAVTL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7532958984375	2	480.753464	959.492375	0.92375	0.0004441	-1.3793	-0.0006631	-0.45554	-0.000219	480.7528244011192	40.904	0.28229	40.904	40.748	41.03	0					7	4	2	0	0	0	0.15558	1	16260	16260		66.962	8.18	1	222240			35813	4631	24540	24630	36254	36254					0.011008733096218748
SENKAQVSL	9	Unmodified	_SENKAQVSL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2586669921875	2	488.258914	974.503274	-0.077054	-3.7623E-05	-0.38763	-0.00018927	-0.46469	-0.00022689	488.2587260402419	24.52	0.19322	24.52	24.435	24.628	0					7	5	2	0	0	0	0.15558	1	7251	7251		66.962	15.769	1	93327			35814	11586	24541	24631	36255	36255					0.01500275683918062
SENKAQVSL	9	Unmodified	_SENKAQVSL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.25848388671875	2	488.258914	974.503274	0.75045	0.00036642	-2.1008	-0.0010257	-1.3503	-0.00065931	488.25786236370294	24.863	0.28912	24.863	24.741	25.03	0					18	7	3	0	0	0	0.061298	1	8420	8420		91.265	27.959	1	658560			35815	11586	24541	24631	36256	36256					0.01500275683918062
SENKAQVSL	9	Unmodified	_SENKAQVSL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2587890625	2	488.258914	974.503274	-1.2481	-0.00060939	-0.41565	-0.00020295	-1.6637	-0.00081234	488.2587629287898	24.561	0.15642	24.561	24.498	24.655	0					10	5	3	0	0	0	0.30257	1	7538	7538		50.034	5.5024	1	203080			35816	11586	24541	24631	36257	36257					0.01500275683918062
SENKAQVSL	9	Unmodified	_SENKAQVSL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2586364746094	2	488.258914	974.503274	0.62061	0.00030302	-3.0636	-0.0014958	-2.443	-0.0011928	488.2575009896136	24.803	0.36183	24.803	24.694	25.056	0					16	7	3	0	0	0	0.11411	1	8736	8736		76.17	16.051	1	1095800			35817	11586	24541	24631	36258	36258					0.01500275683918062
SENKAQVSL	9	Unmodified	_SENKAQVSL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2586364746094	2	488.258914	974.503274	0.79486	0.0003881	-3.2582	-0.0015909	-2.4634	-0.0012028	488.2572901392407	24.763	0.39899	24.763	24.661	25.06	0					17	8	3	0	0	0	0.090954	1	8595	8595		81.525	17.991	1	1169900			35818	11586	24541	24631	36259	36259					0.01500275683918062
SENKLPAEL	9	Unmodified	_SENKLPAEL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7691650390625	2	500.769114	999.523675	0.40218	0.0002014	-0.2651	-0.00013275	0.13708	6.8646E-05	500.7690021551621	32.556	0.28772	32.556	32.422	32.71	0					27	12	3	0	0	0	0.24334	1	10514	10514		56.434	16.376	1	285260			35819	2068	24542	24632	36260	36260					0.023894463437159175
SENKLPAEL	9	Unmodified	_SENKLPAEL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7688293457031	2	500.769114	999.523675	0.66262	0.00033182	-0.70303	-0.00035205	-0.040409	-2.0236E-05	500.7687709992803	32.832	0.28638	32.832	32.668	32.954	0					21	7	4	0	0	0	0.047855	1	12065	12065		96.034	32.5	1	1172400			35820	2068	24542	24632	36261	36261					0.023894463437159175
SENKLPAEL	9	Unmodified	_SENKLPAEL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7695617675781	2	500.769114	999.523675	-0.99368	-0.00049761	0.62203	0.0003115	-0.37165	-0.00018611	500.76915880317085	32.613	0.31048	32.613	32.49	32.801	0					22	12	2	0	0	0	0.10506	1	10874	10874		78.264	16.573	1	342190			35821	2068	24542	24632	36262	36262					0.023894463437159175
SENKLPAEL	9	Unmodified	_SENKLPAEL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7691955566406	2	500.769114	999.523675	0.91619	0.0004588	-1.2506	-0.00062625	-0.33438	-0.00016745	500.76839594821746	32.796	0.38039	32.796	32.639	33.02	0					17	9	2	0	0	0	0.026848	1	12488	12488		112.11	21.506	1	2156300			35822	2068	24542	24632	36263	36263					0.023894463437159175
SENKLPAEL	9	Unmodified	_SENKLPAEL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.76910400390625	2	500.769114	999.523675	0.15263	7.6431E-05	-0.32842	-0.00016446	-0.1758	-8.8033E-05	500.7689606458202	32.592	0.34534	32.592	32.476	32.821	0					18	10	2	0	0	0	0.04067	1	11340	11340		98.582	35.048	1	273860			35823	2068	24542	24632	36264	36264					0.023894463437159175
SENKLPAEL	9	Unmodified	_SENKLPAEL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7690734863281	2	500.769114	999.523675	1.1109	0.0005563	0.93444	0.00046794	2.0453	0.0010242	500.76847476048533	32.76	0.46623	32.76	32.506	32.972	0					25	9	4	0	0	0	0.037712	1	12392	12392		101.46	21.005	1	2123700			35824	2068	24542	24632	36265	36265					0.023894463437159175
SENNRIFTL	9	Unmodified	_SENNRIFTL_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK	nc|ENSG00000156110|P55263-4|ADK	nc|ENSG00000156110|P55263-4|ADK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2847900390625	2	547.285463	1092.55637	0.45418	0.00024857	-0.85253	-0.00046658	-0.39835	-0.00021801	547.2847860620435	40.798	0.30225	40.798	40.735	41.037	0					10	9	2	0	0	0	0.36135	1	15553	15553		45.022	4.244	1	119850			35825	5155	24543	24633	36266	36266					0.01379653466574382
SENNRIFTL	9	Unmodified	_SENNRIFTL_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK	nc|ENSG00000156110|P55263-4|ADK	nc|ENSG00000156110|P55263-4|ADK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.2872924804688	2	547.285463	1092.55637	0.44563	0.00024388	-0.060605	-3.3168E-05	0.38502	0.00021072	547.2853962352023	40.625	0.16129	40.625	40.502	40.664	0					14	9	2	0	0	0	0.41958	1	13574	13574		40.058	0	1	104500			35826	5155	24543	24633	36267	36267					0.01379653466574382
SENNRIFTL	9	Unmodified	_SENNRIFTL_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK	nc|ENSG00000156110|P55263-4|ADK	nc|ENSG00000156110|P55263-4|ADK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2857666015625	2	547.285463	1092.55637	1.8332	0.0010033	-1.4591	-0.00079855	0.37411	0.00020475	547.2845040418092	40.806	0.36795	40.806	40.671	41.039	0					19	11	3	0	0	0	0.11898	1	16064	16064		75.043	3.1658	1	419970			35827	5155	24543	24633	36268	36268					0.01379653466574382
SENQNRAYVTL	11	Unmodified	_SENQNRAYVTL_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	647.8242797851562	2	647.822941	1293.63133	-0.66135	-0.00042844	0.99109	0.00064205	0.32974	0.00021361	647.8248098031505	32.572	0.1682	32.572	32.511	32.679	0					8	4	3	0	0	0	0.52595	1	12389	12389		42.338	1.7655	1	60760			35828	7817	24544	24634	36269	36269					-0.003742087928685578
SENVLQVHL	9	Unmodified	_SENVLQVHL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4;ENST00000496670.6_1_2:148709144-148730385:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7830200195312	2	519.782556	1037.55056	1.4048	0.00073019	-0.76121	-0.00039566	0.6436	0.00033453	519.7823366971041	41.901	0.11324	41.901	41.836	41.949	0					6	5	2	0	0	0	0.19605	1	15905	15905		62.107	1.8135	1	38083			35829	2948	24545	24635	36270	36270					0.0332855495489639
SENVLQVHL	9	Unmodified	_SENVLQVHL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4;ENST00000496670.6_1_2:148709144-148730385:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7827758789062	2	519.782556	1037.55056	1.657	0.00086128	-1.1785	-0.00061257	0.47849	0.00024871	519.781724337111	41.825	0.22488	41.825	41.762	41.987	0					20	10	3	0	0	0	0.037924	1	16434	16434		101.25	44.532	1	418730			35830	2948	24545	24635	36271	36271					0.0332855495489639
SENVLQVHL	9	Unmodified	_SENVLQVHL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4;ENST00000496670.6_1_2:148709144-148730385:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.783203125	2	519.782556	1037.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.644	1	41.644	41.144	42.144	0								0	0	0	0.31838	1	14655	14655		31.53	3.6476	1				35831	2948	24545	24635	36272	36272					0.0332855495489639
SENVLQVHL	9	Unmodified	_SENVLQVHL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4;ENST00000496670.6_1_2:148709144-148730385:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7821044921875	2	519.782556	1037.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.622	1	41.622	41.122	42.122	0								0	0	0	0.28666	1	14649	14649		37.812	2.6108	1				35832	2948	24545	24635	36273	36273					0.0332855495489639
SENVLQVHL	9	Unmodified	_SENVLQVHL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4;ENST00000496670.6_1_2:148709144-148730385:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7828369140625	2	519.782556	1037.55056	1.6159	0.00083993	-0.8952	-0.00046531	0.72073	0.00037462	519.7818903900701	41.818	0.27958	41.818	41.715	41.994	0					18	8	3	0	0	0	0.026538	1	16646	16646		112.41	29.124	1	290450			35833	2948	24545	24635	36274	36274					0.0332855495489639
SENVLQVHL	9	Unmodified	_SENVLQVHL_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENSG00000115947|ENST00000392857|ORC4;ENST00000496670.6_1_2:148709144-148730385:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7824096679688	2	519.782556	1037.55056	3.3618	0.0017474	-3.5835	-0.0018626	-0.22171	-0.00011524	519.7803340173324	41.806	0.23834	41.806	41.703	41.942	0					15	7	3	0	0	0	0.11898	1	16657	16657		75.043	19.539	1	258070			35834	2948	24545	24635	36275	36275					0.0332855495489639
SEPCWLRL	8	Unmodified	_SEPCWLRL_					0	0	0		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2561340332031	2	502.25512	1002.49569	2.926	0.0014696	-1.7315	-0.00086966	1.1945	0.00059994	502.2546621635251	24.221	0.71416	24.221	23.65	24.364	0					31	14	3	0	0	0	0.27512	1	8328	8328		90.777	5.6158	1	3353000			35835	9827	24546	24636	36276	36276					-0.005461551173766566
SEPDMIKQVL	10	Unmodified	_SEPDMIKQVL_					0	0	0		nc|ENSG00000059377|P24557-4|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-2|TBXAS1	nc|ENSG00000059377|P24557-4|TBXAS1	nc|ENSG00000059377|P24557-4|TBXAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.3056030273438	2	580.305007	1158.59546	3.2472	0.0018843	-2.6364	-0.0015299	0.61073	0.00035441	580.8050353508606	42.167	0.24274	42.167	42.053	42.296	0					11	6	3	0	0	0	0.39827	1	16800	16800		56.434	15.007	1	189300			35836	1309	24547	24637	36277	36277					0.022506177059312904
SEPKDRPSF	9	Unmodified	_SEPKDRPSF_					0	0	0		ENSG00000129465|ENST00000216274|RIPK3;ENST00000554756.1_1_14:24805383-24807435:-|nuORF	ENSG00000129465|ENST00000216274|RIPK3	ENSG00000129465|ENST00000216274|RIPK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.76611328125	2	531.764363	1061.51417	3.4167	0.0018169	-2.4322	-0.0012934	0.98443	0.00052349	531.7628599436373	21.068	0.26527	21.068	20.909	21.174	0					13	5	3	0	0	0	0.1115	1	6813	6813		76.774	10.971	1	414610			35837	3598	24548	24638	36278	36278					-0.01412321941825212
SEPMLSHTV	9	Unmodified	_SEPMLSHTV_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7419128417969	2	500.742042	999.469531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.871	1	32.871	32.371	33.371	0								0	0	0	0.13522	1	12432	12432		63.306	2.3343	1				35838	5001	24549	24639	36279	36279					-0.030224690795080278
SEPPVYANL	9	Unmodified	_SEPPVYANL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2506103515625	2	495.250557	988.486562	0.74447	0.0003687	-0.27751	-0.00013744	0.46696	0.00023126	495.25042869783834	42.772	0.14115	42.772	42.712	42.853	0					11	6	2	0	0	0	0.42902	1	16174	16174		39.253	0.44669	1	62959			35839	6675	24550	24640	36280	36280					-0.00814225202043417
SEPPVYANL	9	Unmodified	_SEPPVYANL_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2505798339844	2	495.250557	988.486562	0.93208	0.00046161	-0.97006	-0.00048042	-0.037989	-1.8814E-05	495.2499129621459	42.719	0.25748	42.719	42.621	42.878	0					17	7	3	0	0	0	0.19605	1	17068	17068		62.107	12.666	1	130290			35840	6675	24550	24640	36281	36281					-0.00814225202043417
SEPVTPASL	9	Unmodified	_SEPVTPASL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7823486328125	2	450.737283	899.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.816	1	36.816	36.316	37.316	0								0	0	0	0.19749	1	14341	14341		51.335	0	1				35841	1288	24551	24641	36282	36282					0.006260859066173907
SEQGLAKAV	9	Unmodified	_SEQGLAKAV_					0	0	0		GEMIN4|p.A547V|1|0.24|ENSG00000179409|chr17:746403-746403|G/A|missense_variant;ENSG00000179409|ENST00000319004|GEMIN4	GEMIN4|p.A547V|1|0.24|ENSG00000179409|chr17:746403-746403|G/A|missense_variant	GEMIN4|p.A547V|1|0.24|ENSG00000179409|chr17:746403-746403|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7506103515625	2	451.750724	901.486896	-0.51002	-0.0002304	-0.11151	-5.0376E-05	-0.62153	-0.00028078	451.75077621595756	24.255	0.28721	24.255	24.118	24.405	0					10	6	3	0	0	0	0.056004	1	8131	8131		93.143	7.9824	1	533070			35842	6766	24552	24642	36283	36283					0.03221194517800541
SEQGLAKAV	9	Unmodified	_SEQGLAKAV_					0	0	0		GEMIN4|p.A547V|1|0.24|ENSG00000179409|chr17:746403-746403|G/A|missense_variant;ENSG00000179409|ENST00000319004|GEMIN4	GEMIN4|p.A547V|1|0.24|ENSG00000179409|chr17:746403-746403|G/A|missense_variant	GEMIN4|p.A547V|1|0.24|ENSG00000179409|chr17:746403-746403|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7508239746094	2	451.750724	901.486896	-2.6118	-0.0011799	2.8887	0.001305	0.27689	0.00012509	451.75192305131054	23.99	0.16315	23.99	23.915	24.078	0					8	4	2	0	0	0	0.035062	1	7415	7415		104.06	8.2416	1	158480			35843	6766	24552	24642	36284	36284					0.03221194517800541
SEQKFLIGL	9	Unmodified	_SEQKFLIGL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7985229492188	2	517.797675	1033.5808	3.3328	0.0017257	-2.6975	-0.0013967	0.63529	0.00032895	517.7963566489854	46.822	0.16124	46.822	46.725	46.887	0					11	8	2	0	0	0	0.19952	1	18713	18713		54.776	12.38	1	79685			35844	4149	24553	24643	36285	36285					0.06534913620112093
SEQKGKAAL	9	Unmodified	_SEQKGKAAL_					0	0	0		nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L;SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant;SPECC1L|p.N785Mfs*11|1|0.38|ENSG00000100014|chr22:24330383-24330383|A/-|frameshift_variant	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2637023925781	2	466.263999	930.513445	-0.49912	-0.00023272	0.21068	9.8234E-05	-0.28844	-0.00013449	466.26401631215083	14.906	0.16705	14.906	14.811	14.978	0					7	3	3	0	0	0	0.087861	1	3809	3809		82.241	10.945	1	124910			35845	1960	24554	24644	36286	36286					0.04540883409140406
SEQSLGQKL	9	Unmodified	_SEQSLGQKL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.26617431640625	2	495.266739	988.518924	-0.064085	-3.1739E-05	-0.496	-0.00024565	-0.56008	-0.00027739	495.2664181164615	25.595	0.13327	25.595	25.514	25.648	0					6	4	2	0	0	0	0.056004	1	7715	7715		93.143	15.826	1	52272			35846	2305	24555	24645	36287	36287					0.024205622009731087
SERDGVLAL	9	Unmodified	_SERDGVLAL_					0	0	0		ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2612609863281	2	480.261456	958.50836	-0.50154	-0.00024087	-0.17947	-8.6191E-05	-0.681	-0.00032706	480.26159529654495	37.187	0.25228	37.187	37.076	37.328	0					18	7	3	0	0	0	0.55379	1	14503	14503		26.693	0	1	221050			35847	1880	24556	24646	36288	36288					0.027445795465155243
SEREKVAQL	9	Unmodified	_SEREKVAQL_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2940673828125	2	530.293288	1058.57202	0.933	0.00049476	-0.098309	-5.2132E-05	0.83469	0.00044263	530.2933015311861	21.136	0.11338	21.136	21.078	21.192	0					6	2	3	0	0	0	0.14578	1	6970	6970		68.846	8.7279	1	393800			35848	2539	24557	24647	36289	36289					0.04507939983614051
SEREKVAQL	9	Unmodified	_SEREKVAQL_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2936401367188	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.171	1	21.171	20.671	21.671	0								0	0	0	0.088368	1	6848	6848		75.043	0	1				35849	2539	24557	24647	36290	36290					0.04507939983614051
SEREMRNTL	9	Unmodified	_SEREMRNTL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.2806396484375	2	568.279854	1134.54516	1.4572	0.00082807	-0.46213	-0.00026262	0.99502	0.00056545	568.2796607157921	20.522	0.10902	20.522	20.459	20.568	0					8	3	3	0	0	0	0.10915	1	5503	5503		77.318	33.201	1	145410			35850	2826	24558	24648	36291	36291					-0.01673491899214241
SEREMRNTL	9	Unmodified	_SEREMRNTL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.280029296875	2	568.279854	1134.54516	0.115	6.5353E-05	0.29046	0.00016506	0.40546	0.00023041	568.2801792833776	20.56	0.13778	20.56	20.498	20.636	0					10	4	3	0	0	0	0.070005	1	5753	5753		88.177	61.484	1	369680			35851	2826	24558	24648	36292	36292					-0.01673491899214241
SEREMRNTL	9	Unmodified	_SEREMRNTL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.280517578125	2	568.279854	1134.54516	1.9558	0.0011114	-1.0186	-0.00057888	0.93716	0.00053257	568.2793669162282	20.772	0.16868	20.772	20.662	20.83	0					9	3	3	0	0	0	0.085655	1	6794	6794		82.75	8.4954	1	2598600			35852	2826	24558	24648	36293	36293					-0.01673491899214241
SEREMRNTL	9	Unmodified	_SEREMRNTL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.2806396484375	2	568.279854	1134.54516	1.6537	0.00093977	-0.57788	-0.0003284	1.0758	0.00061137	568.2797718649252	20.785	0.21644	20.785	20.675	20.891	0					10	4	4	0	0	0	0.04067	1	6647	6647		98.582	23.539	1	1557300			35853	2826	24558	24648	36294	36294					-0.01673491899214241
SEREMRNTL	9	Unmodified	_SEREMRNTL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.18896484375	3	379.188995	1134.54516	0.66728	0.00025303	-0.6662	-0.00025261	0.0010817	4.1019E-07	379.1887759635107	20.735	0.21644	20.735	20.675	20.891	0					5	4	2	0	0	0	0.50858	1	6648	6648		54.722	54.722	1	847120			35854	2826	24558	24648	36295	36295					-0.01673491899214241
SERGRGRAGSR	11	Unmodified	_SERGRGRAGSR_					0	0	0		KCNH2|p.A1144Pfs*111|1|0.36|ENSG00000055118|chr7:150945415-150945415|C/-|frameshift_variant	KCNH2|p.A1144Pfs*111|1|0.36|ENSG00000055118|chr7:150945415-150945415|C/-|frameshift_variant	KCNH2|p.A1144Pfs*111|1|0.36|ENSG00000055118|chr7:150945415-150945415|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.8206176757812	2	594.818858	1187.62316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.223	1	16.223	15.723	16.723	0								0	0	0	0.45674	1	4594	4594		22.58	0.61977	1				35855	11246	24559	24649	36296	36296					0.03685701801032337
SERGRSRL	8	Unmodified	_SERGRSRL_					0	0	0		NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant	NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7715148925781	2	480.770314	959.526075	3.4643	0.0016656	-0.95978	-0.00046144	2.5046	0.0012041	480.7698426222967	21.013	0.18263	21.013	20.899	21.082	0					7	5	2	0	0	0	0.49216	1	5958	5958		60.972	10.947	1	190290			35856	7239	24560	24650	36297	36297					0.04469339592037613
SERIKGYAL	9	Unmodified	_SERIKGYAL_					0	0	0		nc|ENSG00000104611|Q9H788-2|SH2D4A;ENSG00000104611|ENST00000265807|SH2D4A	nc|ENSG00000104611|Q9H788-2|SH2D4A	nc|ENSG00000104611|Q9H788-2|SH2D4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.794189453125	2	518.792924	1035.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.197	1	27.197	26.697	27.697	0								0	0	0	0.25587	1	9826	9826		42.864	11.334	1				35857	2295	24561	24651	36298	36298					0.05493145334571636
SERKTTSK	8	Unmodified	_SERKTTSK_					0	0	0			REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7589416503906	2	468.759081	935.503609	-0.68556	-0.00032136	0.84922	0.00039808	0.16366	7.6716E-05	468.7594401984715	13.646	0.056021	13.646	13.618	13.674	0					5	3	2	0	0	0	0.5535	1	2772	2772		54.776	1.8396	1	37720	+		35858	16085	24562	24652	36299	36299					0.0332769540375466
SERLTLLAP	9	Unmodified	_SERLTLLAP_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI;ENST00000515433.1_1_5:135385061-135390565:+|nuORF	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.294921875	2	500.295299	998.576045	0.89693	0.00044873	-1.1935	-0.00059709	-0.29654	-0.00014836	500.2946976272692	35.751	0.32518	35.751	35.605	35.93	0					15	9	2	0	0	0	0.14603	1	13867	13867		68.787	7.0955	1	980090			35859	3187	24563	24653	36300	36300					0.07670029477321805
SERNSTEAL	9	Unmodified	_SERNSTEAL_					0	0	0		ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM;ENST00000558657.1_1_15:50086592-50087141:+|nuORF	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.74322509765625	2	503.743628	1005.4727	-0.061483	-3.0972E-05	-0.19739	-9.9436E-05	-0.25888	-0.00013041	503.74338430818887	20.15	0.19113	20.15	20.05	20.241	0					7	4	2	0	0	0	0.30951	1	6212	6212		49.442	3.4693	1	377060			35860	3712	24564	24654	36301	36301					-0.029815027011409256
SERVVQEAL	9	Unmodified	_SERVVQEAL_					0	0	0		ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;ENST00000482899.1_1_7:150737654-150742433:+|nuORF	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	ENST00000466514.5_1_7:150731570-150742433:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.77978515625	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.93	1	28.93	28.43	29.43	0								0	0	0	0.25587	1	9375	9375		42.864	3.6114	1				35861	7432	24565	24655	36302	36302					0.03188251092274186
SERVVSVL	8	Unmodified	_SERVVSVL_					0	0	0		nc|ENSG00000204370|O14521-4|SDHD;SDHD|p.T67I|1|0.57|ENSG00000204370|chr11:112088897-112088897|C/T|missense_variant;ENST00000484597.1_1_3:169427217-169427478:+|nuORF;nc|ENSG00000204370|O14521-2|SDHD;ENSG00000204370|ENST00000375549|SDHD	nc|ENSG00000204370|O14521-4|SDHD	nc|ENSG00000204370|O14521-4|SDHD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.7607116699219	2	444.761092	887.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.541	1	32.541	32.041	33.041	0								0	0	0	1.7419	1	10865	10865		34.173	0.65696	1				35862	11721	24566	24656	36303	36303					0.05937784897491838
SESAKIKAM	9	Unmodified	_SESAKIKAM_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7598571777344	2	482.760235	963.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.525	1	19.525	19.025	20.025	0								0	0	0	0.018211	1	5906	5906		101.6	46.097	1				35863	5668	24567	24657	36304	36304					0.022704078172182562
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7388610839844	2	490.739499	979.464446	-0.052567	-2.5797E-05	-0.99178	-0.00048671	-1.0444	-0.0005125	490.7390419412199	22.871	0.1646	22.871	22.804	22.968	0					6	5	2	0	0	0	0.43488	1	6528	6528		38.754	6.7987	1	69342			35864	7898;11663;7569;7325	24568	24658	36305	36305					-0.026107729421141812
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7392578125	2	490.739499	979.464446	-1.2583	-0.0006175	0.19814	9.7235E-05	-1.0602	-0.00052026	490.7398491227789	22.914	0.33761	22.914	22.818	23.155	0					33	11	4	0	0	0	0.015496	2	6803	6803;6896		129.42	39.051	1	1653200			35865	7898;11663;7569;7325	24568	24658	36306;36307	36306					-0.026107729421141812
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.73919677734375	2	490.739499	979.464446	-0.095151	-4.6695E-05	-0.74452	-0.00036537	-0.83968	-0.00041206	490.739210452609	22.995	0.26725	22.995	22.869	23.136	0					16	6	4	0	0	0	0.012936	1	6935	6935		134.77	47.069	1	889850			35866	7898;11663;7569;7325	24568	24658	36308	36308					-0.026107729421141812
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.73907470703125	2	490.739499	979.464446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.957	1	22.957	22.457	23.457	0								0	0	0	0.0008658	1	6927	6927		141.52	24.617	1				35867	7898;11663;7569;7325	24568	24658	36309	36309					-0.026107729421141812
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7391662597656	2	490.739499	979.464446	0.78798	0.00038669	-1.7303	-0.00084915	-0.94236	-0.00046245	490.7388238194707	23.125	0.41216	23.125	22.973	23.385	0					22	8	4	0	0	0	0.003936	1	7784	7784		163.15	47.657	1	8562900			35868	7898;11663;7569;7325	24568	24658	36310	36310					-0.026107729421141812
SESDKTAVL	9	Unmodified	_SESDKTAVL_					0	0	0		nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1	nc|ENSG00000147526|O75410-5|TACC1	nc|ENSG00000147526|O75410-5|TACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2450256347656	2	475.245472	948.476391	-1.565	-0.00074374	0.74427	0.00035371	-0.82069	-0.00039003	475.2458627249233	24.082	0.29945	24.082	23.991	24.29	0					21	9	3	0	0	0	0.10915	1	7318	7318		77.318	3.3428	1	389600			35869	4787	24569	24659	36311	36311					9.1670727329074E-05
SESDKTAVL	9	Unmodified	_SESDKTAVL_					0	0	0		nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1	nc|ENSG00000147526|O75410-5|TACC1	nc|ENSG00000147526|O75410-5|TACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2449035644531	2	475.245472	948.476391	-2.6711	-0.0012694	1.9671	0.00093485	-0.70404	-0.00033459	475.24625675551744	24.123	0.27879	24.123	24.023	24.301	0					11	6	3	0	0	0	0.24334	1	7482	7482		56.434	14.038	1	266310			35870	4787	24569	24659	36312	36312					9.1670727329074E-05
SESKDSFMK	9	Unmodified	_SESKDSFMK_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7451782226562	2	529.744782	1057.47501	1.6319	0.00086451	-2.4824	-0.001315	-0.85048	-0.00045054	529.7441619616279	29.926	1.1576	29.926	28.941	30.099	0					41	23	3	0	0	0	0.51991	1	11015	11015		30.318	0	1	583410	+		35871	17188	24570	24660	36313	36313					-0.05142790287686694
SESLDMLALLG	11	Unmodified	_SESLDMLALLG_					0	0	0			REV__ENSG00000144214|ENST00000308528|LYG1	REV__ENSG00000144214|ENST00000308528|LYG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.53485107421875	3	383.533768	1147.57948	3.225	0.0012369	-0.12075	-4.6314E-05	3.1043	0.0011906	383.53374027715313	16.325	0.31699	16.325	16.166	16.483	0					19	6	4	0	0	0	0.64626	1	4487	4487		32.751	1.1163	1	1539000	+		35872	15224	24571	24661	36314	36314					0.011589114690195856
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.28485107421875	2	501.284931	1000.55531	-0.044917	-2.2516E-05	-0.092532	-4.6385E-05	-0.13745	-6.8901E-05	501.2848532174775	33.97	0.40875	33.97	33.751	34.16	0					38	17	3	0	0	0	0.037924	1	11088	11088		101.25	21.802	1	457380			35873	1541	24572	24662	36315	36315					0.05505439097669296
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.28472900390625	2	501.284931	1000.55531	-0.10964	-5.4963E-05	0.12008	6.0195E-05	0.010436	5.2316E-06	501.2849806808671	34.293	0.70347	34.293	33.987	34.691	0					44	18	4	0	0	0	0.032383	1	12748	12748		106.68	26.97	1	2243100			35874	1541	24572	24662	36316	36316					0.05505439097669296
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2850341796875	2	501.284931	1000.55531	-0.96535	-0.00048392	0.97058	0.00048654	0.005228	2.6207E-06	501.2853685613112	34.082	0.39382	34.082	33.835	34.229	0					46	16	4	0	0	0	0.047855	1	11450	11450		96.034	39.313	1	808700			35875	1541	24572	24662	36317	36317					0.05505439097669296
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.28436279296875	2	501.284931	1000.55531	0.93877	0.00047059	-0.95455	-0.0004785	-0.015778	-7.9094E-06	501.2844471163302	34.266	1.0059	34.266	33.799	34.805	0					54	25	3	0	0	0	0.02429	1	13179	13179		114.89	32.654	1	5519100			35876	1541	24572	24662	36318	36318					0.05505439097669296
SESLTKLAL	9	Unmodified	_SESLTKLAL_					0	0	0			REV__ENST00000592558.1_1_19:39123109-39125644:+|nuORF	REV__ENST00000592558.1_1_19:39123109-39125644:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.2818908691406	2	481.281857	960.549162	0.0398	1.9155E-05	0.59857	0.00028808	0.63837	0.00030724	481.28218270801284	33.078	0.14985	33.078	33.007	33.157	0					10	7	2	0	0	0	0.2873	1	10727	10727		51.335	0.14276	1	66075	+		35877	20539	24573	24663	36319	36319					0.06730920866129964
SESMANRDA	9	Unmodified	_SESMANRDA_					0	0	0		ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B	ENSG00000165914|ENST00000328459|TTC7B	ENSG00000165914|ENST00000328459|TTC7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7070007324219	2	490.708731	979.402908	-2.7593	-0.001354	-1.2382	-0.0006076	-3.9975	-0.0019616	490.70817935408803	20.43	0.30307	20.43	20.296	20.599	0					14	7	3	0	0	0	0.48389	1	5712	5712		34.173	1.3601	1	295380			35878	5840	24574	24664	36320	36320					-0.08761704641403867
SESNHLIHL	9	Unmodified	_SESNHLIHL_					0	0	0		EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1	EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant	EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.5174865722656	3	350.517329	1048.53016	0.69966	0.00024524	-0.60335	-0.00021148	0.096314	3.376E-05	350.517071299722	29.488	0.42016	29.488	29.245	29.666	0					12	10	2	0	0	0	0.47038	1	10532	10532		51.193	19.238	1	421960			35879	1846	24575	24665	36321	36321					0.00783384295095857
SESPGKTV	8	Unmodified	_SESPGKTV_					0	0	0		nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.70831298828125	2	402.708525	803.402498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.359	1	16.359	15.859	16.859	0								0	0	0	1.7419	1	4417	4417		99.375	14.015	1				35880	11732	24576	24666	36322	36322					-0.007067562989391263
SESPGKTV	8	Unmodified	_SESPGKTV_					0	0	0		nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.7084045410156	2	402.708525	803.402498	-0.593	-0.00023881	0.16738	6.7404E-05	-0.42562	-0.0001714	402.70861228823446	16.268	0.21869	16.268	16.149	16.367	0					9	4	3	0	0	0	0.41701	1	4477	4477		68.787	2.9837	1	231960			35881	11732	24576	24666	36323	36323					-0.007067562989391263
SESPRSTSL	9	Unmodified	_SESPRSTSL_					0	0	0		nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2406005859375	2	482.240721	962.466889	-1.3179	-0.00063556	0.63361	0.00030555	-0.68432	-0.00033001	482.24092850511664	20.519	0.19849	20.519	20.398	20.597	0					9	6	2	0	0	0	0.16806	1	5744	5744		65.465	14.273	1	89414			35882	2985	24577	24667	36324	36324					-0.015846012127894937
SESPSQPSD	9	Unmodified	_SESPSQPSD_					0	0	0		nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.1933898925781	2	467.193436	932.37232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.542	1	49.542	49.042	50.042	0								0	0	0	0.38123	1	19590	19590		16.473	0	1				35883	5473	24578	24668	36325	36325					-0.09657159754794975
SESPTRSLS	9	Unmodified	_SESPTRSLS_					0	0	0		nc|ENSG00000141750|Q6ZMT1-2|STAC2;ENSG00000141750|ENST00000333461|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.240478515625	2	482.240721	962.466889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.628	1	20.628	20.128	21.128	0								0	0	0	0.21054	1	5835	5835		49.442	5.3247	1				35884	4470	24579	24669	36326	36326					-0.01584601212812231
SESPVWVKL	9	Unmodified	_SESPVWVKL_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7897338867188	2	522.78985	1043.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.293	1	44.293	43.793	44.793	0								0	0	0	0.1633	1	16621	16621		56.721	1.9447	1				35885	4616	24580	24670	36327	36327					0.04510627103036313
SESPVWVKL	9	Unmodified	_SESPVWVKL_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7900390625	2	522.78985	1043.56515	3.4079	0.0017816	-1.6853	-0.00088105	1.7226	0.00090055	522.7887063286487	44.214	0.33149	44.214	44.072	44.403	0					26	14	3	0	0	0	0.21263	1	17700	17700		60.118	8.7828	1	133550			35886	4616	24580	24670	36328	36328					0.04510627103036313
SESQEGHVL	9	Unmodified	_SESQEGHVL_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.232666015625	2	493.232896	984.451239	0.0016658	8.2161E-07	-0.58028	-0.00028621	-0.57861	-0.00028539	493.2327085568572	22.428	0.15267	22.428	22.376	22.529	0					5	3	2	0	0	0	0.22837	1	6693	6693		58.23	17.452	1	111650			35887	6386	24581	24671	36329	36329					-0.04160887729847218
SESSIDRLM	9	Unmodified	_SESSIDRLM_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2506713867188	2	519.250231	1036.48591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.541	1	35.541	35.041	36.041	0								0	0	0	0.16453	1	13335	13335		56.434	8.4743	1				35888	6864	24582	24672	36330	36330					-0.030873879134105664
SESSIDRLM	9	Unmodified	_SESSIDRLM_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2507934570312	2	519.250231	1036.48591	0.17047	8.8515E-05	0.8626	0.00044791	1.0331	0.00053642	519.2508194739112	35.284	0.12571	35.284	35.212	35.337	0					9	5	2	0	0	0	0.40353	1	11931	11931		41.427	7.2541	1	73581			35889	6864	24582	24672	36331	36331					-0.030873879134105664
SESSIDRLM	9	Unmodified	_SESSIDRLM_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7507934570312	2	519.250231	1036.48591	-1.3685	-0.0007106	3.8398	0.0019938	2.4712	0.0012832	519.2520202663476	35.287	0.24653	35.287	35.105	35.351	0					13	8	3	0	0	0	0.30841	2	12571	12552;12571		49.536	1.8787	1	77834			35890	6864	24582	24672	36332;36333	36333					-0.030873879134105664
SESSLALRL	9	Unmodified	_SESSLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.27630615234375	2	488.277106	974.53966	-0.017652	-8.6189E-06	-0.51125	-0.00024963	-0.52891	-0.00025825	488.2767110001717	39.48	0.27768	39.48	39.367	39.644	0					32	16	3	0	0	0	0.27249	1	12804	12804		52.937	17.318	1	244320			35891	801	24583	24673	36334	36334					0.051371525806075624
SESSLALRL	9	Unmodified	_SESSLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2764892578125	2	488.277106	974.53966	-0.38597	-0.00018846	-0.11481	-5.6059E-05	-0.50078	-0.00024452	488.27703655006536	39.793	0.40731	39.793	39.697	40.104	0					38	15	4	0	0	0	0.014688	1	15140	15140		131.03	43.277	1	1779000			35892	801	24583	24673	36335	36335					0.051371525806075624
SESSLALRL	9	Unmodified	_SESSLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2772216796875	2	488.277106	974.53966	-1.2484	-0.00060955	0.89959	0.00043925	-0.34878	-0.0001703	488.2775660107219	39.598	0.2323	39.598	39.471	39.704	0					28	12	3	0	0	0	0.078509	1	13282	13282		85.161	20.954	1	448680			35893	801	24583	24673	36336	36336					0.051371525806075624
SESSLALRL	9	Unmodified	_SESSLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.27703857421875	2	488.277106	974.53966	-0.70827	-0.00034583	-0.6086	-0.00029716	-1.3169	-0.000643	488.276954024985	39.788	0.19316	39.788	39.692	39.886	0					13	6	3	0	0	0	0.10915	1	15639	15639		77.318	22.541	1	204290			35894	801	24583	24673	36337	36337					0.051371525806075624
SESSLALRL	9	Unmodified	_SESSLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2769775390625	2	488.277106	974.53966	-0.20087	-9.8081E-05	-0.0040514	-1.9782E-06	-0.20492	-0.00010006	488.27712013353084	39.531	0.25969	39.531	39.455	39.715	0					22	13	2	0	0	0	0.07136	1	14081	14081		87.696	21.267	1	184960			35895	801	24583	24673	36338	36338					0.051371525806075624
SESSLALRL	9	Unmodified	_SESSLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2777404785156	2	488.277106	974.53966	0.7935	0.00038745	-0.8156	-0.00039824	-0.022095	-1.0788E-05	488.27669750572824	39.742	0.70562	39.742	39.602	40.308	0					35	16	4	0	0	0	0.010494	1	15694	15694		139.97	51.328	1	2019200			35896	801	24583	24673	36339	36339					0.051371525806075624
SESSLVEEE	9	Unmodified	_SESSLVEEE_					0	0	0			REV__PHF14|p.K94Sfs*7|1|0.1|ENSG00000106443|chr7:10982538-10982539|-/TCTGTTG|frameshift_variant	REV__PHF14|p.K94Sfs*7|1|0.1|ENSG00000106443|chr7:10982538-10982539|-/TCTGTTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.72027587890625	2	504.722027	1007.4295	-0.053541	-2.7023E-05	-3.2221	-0.0016262	-3.2756	-0.0016533	504.72022872068726	12.397	0.28339	12.397	12.32	12.603	0					11	9	2	0	0	0	0.57706	1	2611	2611		24.203	6.8378	1	147300	+		35897	21363	24584	24674	36340	36340					-0.07391737269063015
SESSPGPHSI	10	Unmodified	_SESSPGPHSI_					0	0	0			REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.23236083984375	2	499.232896	996.451239	0.16684	8.3291E-05	-2.6726	-0.0013342	-2.5057	-0.001251	499.23153424530125	32.196	0.21262	32.196	32.076	32.289	0					9	6	2	0	0	0	0.67098	1	11166	11166		25.574	2.5316	1	54682	+		35898	17080	24585	24675	36341	36341					-0.047128877298519
SESSPPKAM	9	Unmodified	_SESSPPKAM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2213439941406	2	467.220943	932.427332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.016	1	19.016	18.516	19.516	0								0	0	0	0.1633	1	4839	4839		56.721	9.9546	1				35899	1248	24586	24676	36342	36342					-0.04158444487870838
SESSPPKAM	9	Unmodified	_SESSPPKAM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.22064208984375	2	467.220943	932.427332	-0.65714	-0.00030703	0.10103	4.7205E-05	-0.5561	-0.00025982	467.22101615963885	19.34	0.23303	19.34	19.248	19.481	0					13	5	3	0	0	0	0.087861	1	5837	5837		82.241	18.033	1	392340			35900	1248	24586	24676	36343	36343					-0.04158444487870838
SESSPPKAM	9	Unmodified	_SESSPPKAM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2209167480469	2	467.220943	932.427332	-1.0024	-0.00046834	0.44106	0.00020607	-0.56134	-0.00026227	467.2212493305421	19.05	0.25616	19.05	18.936	19.192	0					20	8	3	0	0	0	0.17854	1	5075	5075		64.207	20.09	1	143280			35901	1248	24586	24676	36344	36344					-0.04158444487870838
SESSPPKAM	9	Unmodified	_SESSPPKAM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.22088623046875	2	467.220943	932.427332	0.65	0.00030369	-1.6321	-0.00076254	-0.98208	-0.00045885	467.22049138275986	19.268	0.46173	19.268	19.115	19.576	0					26	9	4	0	0	0	0.21263	1	6054	6054		60.118	17.722	1	793890			35902	1248	24586	24676	36345	36345					-0.04158444487870838
SESSPPKAM	9	Unmodified	_SESSPPKAM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.220947265625	2	467.220943	932.427332	-0.70247	-0.00032821	-0.38769	-0.00018114	-1.0902	-0.00050935	467.220714799598	19.068	0.40207	19.068	18.928	19.33	0					12	9	2	0	0	0	0.13267	1	5118	5118		71.877	8.5712	1	105970			35903	1248	24586	24676	36346	36346					-0.04158444487870838
SESSPPKAM	9	Unmodified	_SESSPPKAM_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2206726074219	2	467.220943	932.427332	-2.2102	-0.0010327	1.2002	0.00056078	-1.01	-0.0004719	467.22163345332746	19.128	0.26542	19.128	19.009	19.274	0					12	6	3	0	0	0	0.21263	1	5110	5110		60.118	10.677	1	148670			35904	1248	24586	24676	36347	36347					-0.04158444487870838
SESSRKLVP	9	Unmodified	_SESSRKLVP_					0	0	0			REV__KMT2E|p.R802Kfs*8|1|0.35|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant	REV__KMT2E|p.R802Kfs*8|1|0.35|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7847900390625	2	501.782556	1001.55056	2.9242	0.0014673	0.45331	0.00022746	3.3775	0.0016948	501.7829375003425	41.198	0.42581	41.198	41.131	41.557	0					16	10	2	0	0	0	0.2873	1	16372	16372		51.335	3.6781	1	77173	+		35905	12840	24587	24677	36348	36348					0.04984554954921805
SESSVKVRL	9	Unmodified	_SESSVKVRL_					0	0	0		nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF;ENST00000460495.5_1_3:137956301-138014731:+|nuORF	nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7903137207031	2	502.790381	1003.56621	0.72325	0.00036364	-1.134	-0.00057014	-0.4107	-0.00020649	502.78998163506486	24.364	0.15591	24.364	24.265	24.421	0					5	3	2	0	0	0	0.27249	1	8207	8207		52.937	10.072	1	651720			35906	2834	24588	24678	36349	36349					0.06456841471970165
SESSVKVRL	9	Unmodified	_SESSVKVRL_					0	0	0		nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF;ENST00000460495.5_1_3:137956301-138014731:+|nuORF	nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7904052734375	2	502.790381	1003.56621	-0.49169	-0.00024722	0.078929	3.9685E-05	-0.41276	-0.00020753	502.79052669022275	24.287	0.21758	24.287	24.179	24.397	0					7	4	2	0	0	0	0.0406	1	8369	8369		98.629	16.389	1	568910			35907	2834	24588	24678	36350	36350					0.06456841471970165
SESSWQLP	8	Unmodified	_SESSWQLP_					0	0	0		nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.22076416015625	2	467.219257	932.423961	2.6431	0.0012349	-0.0020105	-9.3933E-07	2.6411	0.001234	467.21939310993173	19.221	0.41235	19.221	19.112	19.524	0					25	8	4	0	0	0	0.61938	1	5914	5914		45.952	45.952	1	808460			35908	11691	24589	24679	36351	36351					-0.04495371270229498
SESTLALRL	9	Unmodified	_SESTLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2851257324219	2	495.284931	988.55531	-0.40722	-0.00020169	0.84845	0.00042022	0.44123	0.00021853	495.2853094341969	40.7	0.16722	40.7	40.614	40.781	0					13	8	2	0	0	0	0.032052	1	15509	15509		107.01	44.9	1	384900			35909	801	24590	24680	36352	36352					0.060574390976512404
SESTLALRL	9	Unmodified	_SESTLALRL_					0	0	0		nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	nc|ENSG00000187908|Q9UGM3-4|DMBT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.28472900390625	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.475	1	40.475	39.975	40.975	0								0	0	0	0.3119	1	13545	13545		32.812	0.85756	1				35910	801	24590	24680	36353	36353					0.060574390976512404
SESTNQRVL	9	Unmodified	_SESTNQRVL_					0	0	0		ENST00000507723.1_1_5:177021070-177022414:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.267578125	2	517.26727	1032.51999	0.35975	0.00018609	0.086065	4.4519E-05	0.44582	0.00023061	517.2673057446582	21.68	0.19659	21.68	21.605	21.801	0					11	6	2	0	0	0	0.11898	1	6015	6015		75.043	10.836	1	202160			35911	7038	24591	24681	36354	36354					0.0050277656987418595
SESTNQRVL	9	Unmodified	_SESTNQRVL_					0	0	0		ENST00000507723.1_1_5:177021070-177022414:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2673950195312	2	517.26727	1032.51999	0.044261	2.2895E-05	0.30379	0.00015714	0.34805	0.00018003	517.2673234681446	22.026	0.22169	22.026	21.898	22.119	0					12	5	3	0	0	0	0.019882	1	7100	7100		122.18	26.361	1	934010			35912	7038	24591	24681	36355	36355					0.0050277656987418595
SESTNQRVL	9	Unmodified	_SESTNQRVL_					0	0	0		ENST00000507723.1_1_5:177021070-177022414:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.768798828125	2	517.26727	1032.51999	0.023938	1.2382E-05	0.41062	0.0002124	0.43456	0.00022478	517.2675252361475	21.709	0.15583	21.709	21.635	21.791	0					8	4	2	0	0	0	0.10915	2	6287	6284;6287		77.318	22.541	1	373550			35913	7038	24591	24681	36356;36357	36357					0.0050277656987418595
SESVASSQL	9	Unmodified	_SESVASSQL_					0	0	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000561017.1_1_15:80414070-80415156:+|nuORF	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.22222900390625	2	454.221997	906.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.243	1	29.243	28.743	29.743	0								0	0	0	0.080575	1	10807	10807		77.318	18.536	1				35914	1751	24592	24682	36358	36358					-0.027516924784094954
SESVASSQL	9	Unmodified	_SESVASSQL_					0	0	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000561017.1_1_15:80414070-80415156:+|nuORF	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.22174072265625	2	454.221997	906.429441	-0.42031	-0.00019091	-0.16967	-7.707E-05	-0.58998	-0.00026798	454.2219346690356	29.166	0.21468	29.166	29.059	29.274	0					9	4	3	0	0	0	0.28897	1	10665	10665		51.193	1.7511	1	201120			35915	1751	24592	24682	36359	36359					-0.027516924784094954
SESVEAVAK	9	Unmodified	_SESVEAVAK_					0	0	0			REV__nc|ENSG00000177548|Q9H5N1-2|RABEP2	REV__nc|ENSG00000177548|Q9H5N1-2|RABEP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2366638183594	2	460.24019	918.465826	-0.043679	-2.0103E-05	-2.8277	-0.0013014	-2.8714	-0.0013215	460.23864980311856	20.145	0.44078	20.145	20.051	20.492	0					14	10	2	0	0	0	0.07136	1	5595	5595		87.696	15.819	1	118900	+		35916	16699	24593	24683	36360	36360					0.0033318441828669165
SESVLKVM	8	Unmodified	_SESVLKVM_					0	0	0		ENST00000449643.1_1_10:25464657-25465068:-|nuORF	ENST00000449643.1_1_10:25464657-25465068:-|nuORF	ENST00000449643.1_1_10:25464657-25465068:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.7441101074219	2	446.744053	891.473554	0.59945	0.0002678	-0.48244	-0.00021553	0.11701	5.2275E-05	446.74373882697097	33.264	0.27184	33.264	33.176	33.448	0					15	6	3	0	0	0	0.37378	1	12715	12715		73.975	2.679	1	287640			35917	9640	24594	24684	36361	36361					0.023476204142184542
SETAKVFSI	9	Unmodified	_SETAKVFSI_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2663269042969	2	491.266207	980.517862	0.80511	0.00039553	0.85558	0.00042032	1.6607	0.00081584	491.26575569713276	38.016	0.29947	38.016	37.739	38.039	0					13	6	3	0	0	0	0.14578	1	14905	14905		68.846	4.6389	1	155980			35918	5667	24595	24685	36362	36362					0.026823478320466165
SETAVAKNQAL	11	Unmodified	_SETAVAKNQAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3046264648438	2	566.303852	1130.59315	1.2007	0.00067994	-0.8623	-0.00048832	0.33836	0.00019162	566.3033018964862	23.01	0.30342	23.01	22.804	23.107	0					12	10	2	0	0	0	0.21704	1	6545	6545		72.243	24.586	1	105120			35919	3722	24596	24686	36363	36363					0.033079052924676944
SETAVAKNQAL	11	Unmodified	_SETAVAKNQAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.3038940429688	2	566.303852	1130.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.948	1	22.948	22.448	23.448	0								0	0	0	0.38672	1	6827	6827		40.058	0	1				35920	3722	24596	24686	36364	36364					0.033079052924676944
SETAVAKNQAL	11	Unmodified	_SETAVAKNQAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.3048095703125	2	566.303852	1130.59315	0.23741	0.00013444	-0.28853	-0.00016339	-0.05112	-2.895E-05	566.3037113086233	23.238	0.31632	23.238	23.028	23.344	0					17	6	3	0	0	0	0.046463	1	7919	7919		106.88	41.415	1	1343000			35921	3722	24596	24686	36365	36365					0.033079052924676944
SETAVTST	8	Unmodified	_SETAVTST_					0	0	0			REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	398.1903076171875	2	398.190165	794.365778	-0.079061	-3.1481E-05	-0.32973	-0.0001313	-0.4088	-0.00016278	398.189990536461	19.428	0.10213	19.428	19.361	19.463	0					5	3	2	0	0	0	0.75243	1	5032	5032		26.796	6.3143	1	78149	+		35922	12294	24597	24687	36366	36366					-0.0396305291550334
SETDMVRQI	9	Unmodified	_SETDMVRQI_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7647094726562	2	539.763506	1077.51246	0.93179	0.00050295	-0.19242	-0.00010386	0.73937	0.00039909	539.7634569086516	32.515	0.1846	32.515	32.44	32.625	0					17	8	3	0	0	0	0.19605	1	10506	10506		62.107	14.45	1	192750			35923	4909	24598	24688	36367	36367					-0.023196990220640146
SETDMVRQI	9	Unmodified	_SETDMVRQI_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7636108398438	2	539.763506	1077.51246	0.26239	0.00014163	0.37335	0.00020152	0.63573	0.00034314	539.7636517599126	32.746	0.28777	32.746	32.656	32.943	0					25	7	5	0	0	0	0.012231	1	12055	12055		136.27	54.743	1	937330			35924	4909	24598	24688	36368	36368					-0.023196990220640146
SETDMVRQI	9	Unmodified	_SETDMVRQI_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7648315429688	2	539.763506	1077.51246	-0.081815	-4.4161E-05	1.0132	0.00054687	0.93136	0.00050271	539.7642493772719	32.563	0.34102	32.563	32.49	32.831	0					24	13	3	0	0	0	0.012231	1	10873	10873		136.27	52.621	1	244770			35925	4909	24598	24688	36369	36369					-0.023196990220640146
SETDMVRQI	9	Unmodified	_SETDMVRQI_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.763916015625	2	539.763506	1077.51246	-1.479	-0.00079829	1.7974	0.00097016	0.31843	0.00017187	539.7647558191667	32.575	0.29257	32.575	32.469	32.762	0					17	9	3	0	0	0	0.01873	1	11330	11330		124.08	46.763	1	300250			35926	4909	24598	24688	36370	36370					-0.023196990220640146
SETETKQRL	9	Unmodified	_SETETKQRL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2885131835938	2	546.288202	1090.56185	1.9249	0.0010516	-1.1705	-0.00063944	0.75444	0.00041214	546.287645928059	16.84	0.25803	16.84	16.73	16.988	0					6	4	2	0	0	0	0.055856	1	4755	4755		93.195	16.421	1	500210			35927	1219	24599	24689	36371	36371					0.02019332258396389
SETEYVIRC	9	Unmodified	_SETEYVIRC_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2587890625	2	550.258056	1098.50156	0.54683	0.0003009	0.67025	0.00036881	1.2171	0.00066971	550.2584443344676	34.565	0.2481	34.565	34.443	34.691	0					13	6	3	0	0	0	0.13267	1	12880	12880		71.877	18.941	1	225760			35928	6864	24600	24690	36372	36372					-0.04375101396340142
SETEYVIRC	9	Unmodified	_SETEYVIRC_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.259033203125	2	550.258056	1098.50156	1.6911	0.00093054	0.58113	0.00031977	2.2722	0.0012503	550.2580600193306	34.577	0.35036	34.577	34.454	34.805	0					22	9	3	0	0	0	0.24095	1	13353	13353		56.721	1.9447	1	296140			35929	6864	24600	24690	36373	36373					-0.04375101396340142
SETGAGKHV	9	Unmodified	_SETGAGKHV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.22467041015625	2	443.224874	884.435195	0.51436	0.00022798	-0.99301	-0.00044013	-0.47865	-0.00021215	443.22442106107445	13.242	0.20426	13.242	13.144	13.348	0					7	4	2	0	0	0	0.2873	1	3190	3190		51.335	5.3835	1	1150600			35930	3319;10430	24601	24691	36374	36374					-0.011645491760873483
SETGAGKHV	9	Unmodified	_SETGAGKHV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.224609375	2	443.224874	884.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.981	1	12.981	12.481	13.481	0								0	0	0	0.11184	1	2571	2571		68.787	13.283	1				35931	3319;10430	24601	24691	36375	36375					-0.011645491760873483
SETGAGKHV	9	Unmodified	_SETGAGKHV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2246398925781	2	443.224874	884.435195	-0.49912	-0.00022122	-0.12907	-5.7205E-05	-0.62819	-0.00027843	443.22481680288786	13.218	0.16374	13.218	13.111	13.275	0					6	3	2	0	0	0	0.12239	1	3023	3023		74.255	33.477	1	419890			35932	3319;10430	24601	24691	36376	36376					-0.011645491760873483
SETGGYREE	9	Unmodified	_SETGGYREE_					0	0	0		ENST00000355196.6_1_4:83821322-83821651:-|nuORF;ENST00000504869.1_1_4:83821360-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2210693359375	2	514.219985	1026.42542	-0.18869	-9.7027E-05	1.6012	0.00082338	1.4125	0.00072635	514.2211404370856	21.294	0.20002	21.294	21.193	21.393	0					11	6	3	0	0	0	0.35045	1	6095	6095		45.952	1.8352	1	85383			35933	8794	24602	24692	36377	36377					-0.08673781972129291
SETGHVYTF	9	Unmodified	_SETGHVYTF_					0	0	0		ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7379760742188	2	520.737814	1039.46108	1.7058	0.00088825	-0.18409	-9.5863E-05	1.5217	0.00079239	520.7377904389292	32.643	0.36088	32.643	32.524	32.885	0					19	9	3	0	0	0	0.22377	1	12437	12437		58.782	2.0609	1	430870			35934	2752	24603	24693	36378	36378					-0.057076997244848826
SETGKLIVC	9	Unmodified	_SETGKLIVC_					0	0	0			REV__ENST00000541754.1_1_11:114168855-114182798:+|nuORF	REV__ENST00000541754.1_1_11:114168855-114182798:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2545166015625	2	475.254785	948.495018	-0.61048	-0.00029014	-0.52193	-0.00024805	-1.1324	-0.00053818	475.25483123606136	35.39	0.32351	35.39	35.279	35.603	0					13	6	3	0	0	0	0.41113	1	13647	13647		40.778	7.9657	1	248380	+		35935	20140	24604	24694	36379	36379					0.018710054429334377
SETHIYQV	8	Unmodified	_SETHIYQV_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7401428222656	2	488.740357	975.46616	-0.023411	-1.1442E-05	-0.2405	-0.00011754	-0.26391	-0.00012898	488.74011894793756	28.346	0.20535	28.346	28.24	28.445	0					10	6	2	0	0	0	0.63077	1	8830	8830		44.117	0	1	185270			35936	5844	24605	24695	36380	36380					-0.022553958618573233
SETHKAIQAL	10	Unmodified	_SETHKAIQAL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.3011474609375	2	549.301113	1096.58767	0.35914	0.00019727	0.90026	0.00049451	1.2594	0.00069179	549.3012892713424	22.291	0.13635	22.291	22.228	22.365	0					9	4	3	0	0	0	0.21577	1	6549	6549		56.434	0	1	131190			35937	6786	24606	24696	36381	36381					0.04324226500648365
SETHKAIQAL	10	Unmodified	_SETHKAIQAL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.3013916015625	2	549.301113	1096.58767	1.7371	0.00095418	-0.026765	-1.4702E-05	1.7103	0.00093948	549.3006806350154	22.509	0.31184	22.509	22.302	22.614	0					14	6	3	0	0	0	0.048505	1	7643	7643		88.177	15.298	1	933760			35938	6786	24606	24696	36382	36382					0.04324226500648365
SETHKAIQAL	10	Unmodified	_SETHKAIQAL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.3013305664062	2	549.301113	1096.58767	1.1579	0.00063605	-0.041259	-2.2664E-05	1.1167	0.00061339	549.3014085678201	22.381	0.14647	22.381	22.29	22.437	0					6	3	2	0	0	0	0.1725	1	6651	6651		70.816	10.698	1	143380			35939	6786	24606	24696	36383	36383					0.04324226500648365
SETIMDNPE	9	Unmodified	_SETIMDNPE_					0	0	0			REV__nc|ENSG00000120690|P32519-2|ELF1	REV__nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2196655273438	2	518.218597	1034.42264	0.9431	0.00048873	0.40078	0.00020769	1.3439	0.00069642	518.2188538314937	25.301	0.23286	25.301	25.21	25.443	0					9	5	2	0	0	0	0.39215	1	8039	8039		42.396	0	1	200360	+		35940	14290	24607	24697	36384	36384					-0.09319373421294586
SETITQLNL	9	Unmodified	_SETITQLNL_					0	0	0		nc|ENSG00000145604|Q13309-4|SKP2;nc|ENSG00000145604|Q13309-2|SKP2;ENSG00000145604|ENST00000274255|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.77191162109375	2	509.774396	1017.53424	-1.8359	-0.00093589	-2.6782	-0.0013653	-4.5141	-0.0023012	509.7729135338852	42.695	0.16148	42.695	42.614	42.776	0					16	9	2	0	0	0	0.33044	1	14885	14885		47.657	1.6851	1	59898			35941	4678	24608	24698	36385	36385					0.026174289981327092
SETKGVAL	8	Unmodified	_SETKGVAL_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.7265930175781	2	402.726718	803.438883	0.048114	1.9377E-05	-0.18055	-7.2712E-05	-0.13244	-5.3335E-05	402.72662151642527	23.872	0.21644	23.872	23.762	23.979	0					7	4	2	0	0	0	0.51384	1	8292	8292		58.782	14.665	1	319160			35942	7765	24609	24699	36386	36386					0.02930120597761743
SETKGVAL	8	Unmodified	_SETKGVAL_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.7266845703125	2	402.726718	803.438883	-0.59311	-0.00023886	0.55038	0.00022165	-0.042728	-1.7208E-05	402.726958878716	23.837	0.16553	23.837	23.732	23.897	0					6	3	2	0	0	0	0.60719	1	8154	8154		47.916	1.9636	1	171050			35943	7765	24609	24699	36387	36387					0.02930120597761743
SETKIFTA	8	Unmodified	_SETKIFTA_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.7395935058594	2	448.739825	895.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.139	1	29.139	28.639	29.639	0								0	0	0	1.7419	1	10639	10639		77.318	19.506	1				35944	4567	24610	24700	36388	36388					0.013183897692329083
SETKKGFYSL	10	Unmodified	_SETKKGFYSL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.3035278320312	2	580.303321	1158.59209	-0.035062	-2.0347E-05	0.49726	0.00028856	0.4622	0.00026821	580.3035721562176	29.204	0.2874	29.204	29.118	29.406	0					15	7	3	0	0	0	0.03454	1	10409	10409		114.89	21.297	1	885210			35945	5144	24611	24701	36389	36389					0.01913690923561262
SETKKGFYSL	10	Unmodified	_SETKKGFYSL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.30322265625	2	580.303321	1158.59209	-0.10999	-6.3826E-05	0.36339	0.00021087	0.2534	0.00014705	580.3035349857087	28.963	0.23343	28.963	28.88	29.114	0					16	9	3	0	0	0	0.35046	1	9384	9384		61.691	3.4614	1	163060			35946	5144	24611	24701	36390	36390					0.01913690923561262
SETKKGFYSL	10	Unmodified	_SETKKGFYSL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.3034057617188	2	580.303321	1158.59209	1.5429	0.00089534	-1.2438	-0.00072181	0.29905	0.00017354	580.3024245336205	29.204	0.41881	29.204	29.104	29.522	0					23	9	4	0	0	0	0.065778	1	10802	10802		104.01	23.559	1	861570			35947	5144	24611	24701	36391	36391					0.01913690923561262
SETKKGFYSL	10	Unmodified	_SETKKGFYSL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	580.3037109375	2	580.303321	1158.59209	-1.6875	-0.00097927	2.2933	0.0013308	0.60582	0.00035156	580.304656810036	29	0.14398	29	28.91	29.054	0					8	3	3	0	0	0	0.27065	1	9711	9711		70.816	19.288	1	136610			35948	5144	24611	24701	36392	36392					0.01913690923561262
SETKNANSL	9	Unmodified	_SETKNANSL_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.24053955078125	2	482.240721	962.466889	0.072526	3.4975E-05	-0.60254	-0.00029057	-0.53001	-0.00025559	482.24053391636534	17.235	0.19829	17.235	17.134	17.332	0					14	6	3	0	0	0	0.095583	1	4060	4060		80.455	12.961	1	369760			35949	4181	24612	24702	36393	36393					-0.01584601212812231
SETKNANSL	9	Unmodified	_SETKNANSL_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2405090332031	2	482.240721	962.466889	-0.1063	-5.1264E-05	-0.038094	-1.837E-05	-0.1444	-6.9635E-05	482.2407318184867	17.537	0.36801	17.537	17.448	17.816	0					20	9	4	0	0	0	0.076532	1	4971	4971		85.862	18.368	1	2173700			35950	4181	24612	24702	36394	36394					-0.01584601212812231
SETKNANSL	9	Unmodified	_SETKNANSL_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.2403564453125	2	482.240721	962.466889	-1.3171	-0.00063515	0.60135	0.00029	-0.71572	-0.00034515	482.241041810204	17.281	0.17527	17.281	17.168	17.343	0					13	5	3	0	0	0	0.015496	1	4294	4294		129.42	52.104	1	576020			35951	4181	24612	24702	36395	36395					-0.01584601212812231
SETKNANSL	9	Unmodified	_SETKNANSL_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2402038574219	2	482.240721	962.466889	0.69045	0.00033297	-1.3113	-0.00063234	-0.6208	-0.00029937	482.24016496675307	17.492	0.56974	17.492	17.435	18.005	0					24	11	3	0	0	0	0.0097668	1	5214	5214		141.52	53.766	1	2599500			35952	4181	24612	24702	36396	36396					-0.01584601212812231
SETKNANSL	9	Unmodified	_SETKNANSL_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2403564453125	2	482.240721	962.466889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.503	1	17.503	17.003	18.003	0								0	0	0	0.11963	1	5061	5061		66.962	8.732	1				35953	4181	24612	24702	36397	36397					-0.01584601212812231
SETKNTKKL	9	Unmodified	_SETKNTKKL_					0	0	0		ENST00000358746.6_1_5:94882778-94882820:-|nuORF	ENST00000358746.6_1_5:94882778-94882820:-|nuORF	ENST00000358746.6_1_5:94882778-94882820:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8035278320312	2	524.803488	1047.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.946	1	12.946	12.446	13.446	0								0	0	0	0.077333	1	2883	2883		78.264	0.9462	1				35954	8840	24613	24703	36398	36398					0.07053110643414584
SETKNVYV	8	Unmodified	_SETKNVYV_					0	0	0			REV__PROM1|p.N415K|1|0.36|ENSG00000007062|chr4:16009005-16009005|G/T|missense_variant	REV__PROM1|p.N415K|1|0.36|ENSG00000007062|chr4:16009005-16009005|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2424011230469	2	470.242732	938.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.557	1	39.557	39.057	40.057	0								0	0	0	1.7419	1	15642	15642		29.15	0	1		+		35955	21416	24614	24704	36399	36399					-0.0007851171909578625
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		ENSG00000137073|ENST00000379238|UBAP2;UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant	ENSG00000137073|ENST00000379238|UBAP2	ENSG00000137073|ENST00000379238|UBAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.73175048828125	2	441.732	881.449448	-0.29254	-0.00012922	-0.084962	-3.7531E-05	-0.3775	-0.00016675	441.73188771216013	25.367	0.26301	25.367	25.256	25.519	0					10	5	3	0	0	0	0.25143	1	8983	8983		98.629	35.323	1	476750			35956	4143	24615	24705	36400	36400					0.003981032521892303
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		ENSG00000137073|ENST00000379238|UBAP2;UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant	ENSG00000137073|ENST00000379238|UBAP2	ENSG00000137073|ENST00000379238|UBAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.73175048828125	2	441.732	881.449448	-0.52462	-0.00023174	-0.023458	-1.0362E-05	-0.54808	-0.00024211	441.7319612544246	25.324	0.21832	25.324	25.213	25.431	0					10	4	3	0	0	0	0.39125	1	8841	8841		71.877	5.4482	1	435930			35957	4143	24615	24705	36401	36401					0.003981032521892303
SETLLRVM	8	Unmodified	_SETLLRVM_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479317.1_1_10:99147891-99148113:-|nuORF	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7626647949219	2	474.762778	947.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.085	1	40.085	39.585	40.585	0								0	0	0	1.7419	1	15277	15277		84.916	26.134	1				35958	1257	24616	24706	36402	36402					0.03514711679838456
SETLLRVM	8	Unmodified	_SETLLRVM_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479317.1_1_10:99147891-99148113:-|nuORF	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7624816894531	2	474.762778	947.511002	0.61356	0.0002913	-1.2301	-0.00058402	-0.61656	-0.00029272	474.762104507937	40.082	0.15396	40.082	40.021	40.175	0					8	5	2	0	0	0	0.41701	1	15793	15793		68.787	28.214	1	128780			35959	1257	24616	24706	36403	36403					0.03514711679838456
SETLPASSYST	11	Unmodified	_SETLPASSYST_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.51092529296875	3	381.511909	1141.5139	0.43828	0.00016721	-3.4712	-0.0013243	-3.0329	-0.0011571	381.51070251208154	13.424	0.18633	13.424	13.33	13.517	0					8	4	3	0	0	0	0.6208	1	3275	3275		35.178	1.2566	1	294490	+		35960	16632	24617	24707	36404	36404					-0.05119786452337394
SETNDKLFP	9	Unmodified	_SETNDKLFP_					0	0	0		nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3	nc|ENSG00000133318|O95197-7|RTN3	nc|ENSG00000133318|O95197-7|RTN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7587890625	2	525.758746	1049.50294	0.19299	0.00010147	0.44658	0.00023479	0.63957	0.00033626	525.7589646588405	19.652	0.51921	19.652	19.543	20.062	0					23	10	4	0	0	0	0.24095	1	6234	6234		56.721	1.9447	1	681850			35961	3850	24618	24708	36405	36405					-0.019831440359666885
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.755859375	2	503.756204	1005.49785	-0.057651	-2.9042E-05	-0.39149	-0.00019722	-0.44914	-0.00022626	503.75598595705463	23.406	0.24346	23.406	23.324	23.568	0					19	8	3	0	0	0	0.015496	1	6758	6758		129.42	36.278	1	901330			35962	2650	24619	24709	36406	36406					-0.004674478985634778
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.75616455078125	2	503.756204	1005.49785	-0.060568	-3.0511E-05	0.22841	0.00011506	0.16784	8.4551E-05	503.75641684058746	23.73	0.72322	23.73	23.633	24.356	0					33	16	4	0	0	0	0.032383	1	7886	7886		106.68	5.4304	1	5278100			35963	2650	24619	24709	36407	36407					-0.004674478985634778
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.7560119628906	2	503.756204	1005.49785	-0.85386	-0.00043014	0.40552	0.00020429	-0.44834	-0.00022585	503.75643505715675	23.457	0.52823	23.457	23.304	23.833	0					43	18	4	0	0	0	0.0097668	1	7041	7041		141.52	22.777	1	2283400			35964	2650	24619	24709	36408	36408					-0.004674478985634778
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.75634765625	2	503.756204	1005.49785	1.0164	0.00051203	-0.91387	-0.00046037	0.10256	5.1666E-05	503.75589807356437	23.655	1.0159	23.655	23.344	24.36	0					48	20	5	0	0	0	0.026538	1	8188	8188		112.41	13.782	1	10716000			35965	2650	24619	24709	36409	36409					-0.004674478985634778
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.755859375	2	503.756204	1005.49785	0.12464	6.2787E-05	-0.53314	-0.00026857	-0.4085	-0.00020578	503.7558851721499	23.515	0.29792	23.515	23.387	23.685	0					20	7	4	0	0	0	0.032383	1	7165	7165		106.68	10.868	1	1495300			35966	2650	24619	24709	36410	36410					-0.004674478985634778
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7558288574219	2	503.756204	1005.49785	1.1891	0.00059902	-1.2077	-0.00060841	-0.018629	-9.3845E-06	503.75563739234605	23.675	0.66298	23.675	23.467	24.13	0					36	13	5	0	0	0	0.0097668	1	8045	8045		141.52	22.777	1	10073000			35967	2650	24619	24709	36411	36411					-0.004674478985634778
SETPGLGAKI	10	Unmodified	_SETPGLGAKI_					0	0	0		tr|U7T6G4|U7T6G4_FUSNUIon-translocatingoxidoreductasecomplexsubunitGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfGPE=3SV=1	tr|U7T6G4|U7T6G4_FUSNUIon-translocatingoxidoreductasecomplexsubunitGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfGPE=3SV=1	tr|U7T6G4|U7T6G4_FUSNUIon-translocatingoxidoreductasecomplexsubunitGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfGPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.77154541015625	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.378	1	40.378	39.878	40.878	0								0	0	0	0.12773	1	16027	16027		74.255	2.3776	1				35968	23034	24620	24710	36412	36412					0.04185750206318062
SETPTFAKV	9	Unmodified	_SETPTFAKV_					0	0	0		CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant;ENSG00000167513|ENST00000301019|CDT1	CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant	CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.25823974609375	2	490.258382	978.502212	-0.47256	-0.00023167	0.20926	0.00010259	-0.2633	-0.00012909	490.25834379042595	31.327	0.33346	31.327	31.157	31.49	0					13	8	2	0	0	0	0.15163	1	11401	11401		67.494	11.989	1	495310			35969	464	24621	24711	36413	36413					0.012100613149982564
SETPTFAKV	9	Unmodified	_SETPTFAKV_					0	0	0		CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant;ENSG00000167513|ENST00000301019|CDT1	CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant	CDT1|p.Q285Sfs*33|1|0.46|ENSG00000167513|chr16:88806036-88806036|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2590026855469	2	490.258382	978.502212	-2.7956	-0.0013706	2.9973	0.0014695	0.20175	9.8907E-05	490.2598229245198	31.09	0.23269	31.09	30.932	31.164	0					11	6	2	0	0	0	0.078509	1	10660	10660		85.161	21.855	1	72157			35970	464	24621	24711	36414	36414					0.012100613149982564
SETQLTHT	8	Unmodified	_SETQLTHT_					0	0	0			REV__nc|ENSG00000114993|Q9BST9-3|RTKN	REV__nc|ENSG00000114993|Q9BST9-3|RTKN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7215881347656	2	458.722164	915.429775	-0.15739	-7.2201E-05	-1.1573	-0.0005309	-1.3147	-0.0006031	458.7216879949154	20.638	0.11733	20.638	20.579	20.696	0					6	2	3	0	0	0	0.61938	1	6731	6731		45.952	3.4775	1	138720	+		35971	14093	24622	24712	36415	36415					-0.03132272758580257
SETTAAHSL	9	Unmodified	_SETTAAHSL_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7223815917969	2	458.722164	915.429775	0.06456	2.9615E-05	0.085218	3.9092E-05	0.14978	6.8707E-05	458.7222439809213	20.383	0.22962	20.383	20.214	20.444	0					9	7	2	0	0	0	0.034359	1	5452	5452		104.75	35.96	1	174090			35972	3113	24623	24713	36416	36416					-0.03132272758580257
SETTAAHSL	9	Unmodified	_SETTAAHSL_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.72186279296875	2	458.722164	915.429775	0.79443	0.00036442	-1.2044	-0.00055249	-0.40999	-0.00018807	458.7215847882716	20.708	0.34067	20.708	20.522	20.863	0					16	7	3	0	0	0	0.011031	1	6477	6477		138.83	70.039	1	1136800			35973	3113	24623	24713	36417	36417					-0.03132272758580257
SETTAAHSL	9	Unmodified	_SETTAAHSL_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7217102050781	2	458.722164	915.429775	-0.96068	-0.00044068	0.90296	0.00041421	-0.057712	-2.6474E-05	458.7226134966904	20.442	0.24279	20.442	20.26	20.503	0					14	7	3	0	0	0	0.12239	1	5700	5700		74.255	29.724	1	196630			35974	3113	24623	24713	36418	36418					-0.03132272758580257
SETTAAHSL	9	Unmodified	_SETTAAHSL_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7223205566406	2	458.722164	915.429775	-0.040255	-1.8466E-05	-0.11938	-5.4764E-05	-0.15964	-7.323E-05	458.7221459950029	20.5	0.14244	20.5	20.407	20.549	0					5	3	2	0	0	0	0.1115	1	5787	5787		76.774	27.333	1	85509			35975	3113	24623	24713	36419	36419					-0.03132272758580257
SETTAAHSL	9	Unmodified	_SETTAAHSL_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7219543457031	2	458.722164	915.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.505	1	20.505	20.005	21.005	0								0	0	0	0.035155	1	5778	5778		93.195	34.414	1				35976	3113	24623	24713	36420	36420					-0.03132272758580257
SETTAAHSL	9	Unmodified	_SETTAAHSL_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.72186279296875	2	458.722164	915.429775	-0.4422	-0.00020285	-0.046923	-2.1525E-05	-0.48912	-0.00022437	458.7221725177975	20.65	0.3675	20.65	20.443	20.811	0					15	7	3	0	0	0	0.034359	1	6604	6604		104.75	45.965	1	1075700			35977	3113	24623	24713	36421	36421					-0.03132272758580257
SETTAAHSL	9	Unmodified	_SETTAAHSL_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7220153808594	2	458.722164	915.429775	0.88016	0.00040375	-1.3407	-0.00061502	-0.46056	-0.00021127	458.72165548633086	20.634	0.36686	20.634	20.427	20.793	0					16	7	3	0	0	0	0.055856	1	6595	6595		93.195	24.409	1	2183200			35978	3113	24623	24713	36422	36422					-0.03132272758580257
SETTERTVL	9	Unmodified	_SETTERTVL_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2703857421875	2	518.269478	1034.5244	0.45743	0.00023707	0.65957	0.00034183	1.117	0.00057891	518.2697735271663	25.138	0.14213	25.138	25.044	25.186	0					6	4	2	0	0	0	0.19952	1	7520	7520		54.776	5.3348	1	57214			35979	5632	24624	24714	36423	36423					0.008522409927763874
SETTKGAYSL	10	Unmodified	_SETTKGAYSL_					0	0	0		ENSG00000010810|ENST00000354650|FYN;nc|ENSG00000010810|P06241-3|FYN;FYN|p.D506Gfs*3|1|0.19|ENSG00000010810|chr6:111661838-111661839|-/T|frameshift_variant;ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000010810|P06241-2|FYN;ENST00000418510.1_1_22:26043331-26044389:+|nuORF;ENSG00000176105|ENST00000314574|YES1	ENSG00000010810|ENST00000354650|FYN	ENSG00000010810|ENST00000354650|FYN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.76220703125	2	528.764029	1055.5135	0.51144	0.00027043	-0.31821	-0.00016826	0.19323	0.00010217	528.7636043116864	26.789	0.11086	26.789	26.708	26.819	0					8	4	2	0	0	0	0.65895	1	8174	8174		27.047	1.4733	1	76865			35980	1041	24625	24715	36424	36424					-0.012031613815224773
SETTKGAYSL	10	Unmodified	_SETTKGAYSL_					0	0	0		ENSG00000010810|ENST00000354650|FYN;nc|ENSG00000010810|P06241-3|FYN;FYN|p.D506Gfs*3|1|0.19|ENSG00000010810|chr6:111661838-111661839|-/T|frameshift_variant;ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000010810|P06241-2|FYN;ENST00000418510.1_1_22:26043331-26044389:+|nuORF;ENSG00000176105|ENST00000314574|YES1	ENSG00000010810|ENST00000354650|FYN	ENSG00000010810|ENST00000354650|FYN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7645263671875	2	528.764029	1055.5135	0.11023	5.8283E-05	1.671	0.00088358	1.7813	0.00094187	528.7644796303728	27.046	0.13	27.046	26.956	27.086	0					8	3	3	0	0	0	0.30252	1	9407	9407		66.962	10.528	1	398500			35981	1041	24625	24715	36425	36425					-0.012031613815224773
SETTKGAYSL	10	Unmodified	_SETTKGAYSL_					0	0	0		ENSG00000010810|ENST00000354650|FYN;nc|ENSG00000010810|P06241-3|FYN;FYN|p.D506Gfs*3|1|0.19|ENSG00000010810|chr6:111661838-111661839|-/T|frameshift_variant;ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000010810|P06241-2|FYN;ENST00000418510.1_1_22:26043331-26044389:+|nuORF;ENSG00000176105|ENST00000314574|YES1	ENSG00000010810|ENST00000354650|FYN	ENSG00000010810|ENST00000354650|FYN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7645263671875	2	528.764029	1055.5135	0.28564	0.00015104	-0.60692	-0.00032092	-0.32128	-0.00016988	528.7640454289689	27.047	0.15926	27.047	26.944	27.104	0					5	3	2	0	0	0	0.25899	1	9765	9765		72.243	20.908	1	267740			35982	1041	24625	24715	36426	36426					-0.012031613815224773
SETTQIVKL	9	Unmodified	_SETTQIVKL_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;ENST00000472773.5_1_3:160075355-160102388:-|nuORF;ENST00000477495.5_1_3:160091401-160102388:-|nuORF;IFT80|p.V685Sfs*8|1|0.22|ENSG00000068885|chr3:160277352-160277356|CAAGG/-|frameshift_variant;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.79241943359375	2	509.792589	1017.57063	-0.41297	-0.00021053	0.17343	8.8415E-05	-0.23954	-0.00012212	509.7926895518544	34.169	0.22594	34.169	34.077	34.303	0					12	5	3	0	0	0	0.1424	1	13135	13135		69.628	7.5202	1	243170			35983	11435	24626	24716	36427	36427					0.06254305894856316
SETTVKYVF	9	Unmodified	_SETTVKYVF_					0	0	0		LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant;ENSG00000135862|ENST00000258341|LAMC1	LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2789916992188	2	537.279315	1072.54408	0.2132	0.00011455	-0.41079	-0.00022071	-0.1976	-0.00010616	537.2788811446036	37.715	0.16208	37.715	37.628	37.79	0					8	5	2	0	0	0	0.1115	1	14320	14320		76.774	15.802	1	113360			35984	4028	24627	24717	36428	36428					0.010706170035291507
SETVDKLLSE	10	Unmodified	_SETVDKLLSE_					0	0	0		PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;PPFIA3|p.S658Pfs*70|1|0.24|ENSG00000177380|chr19:49138317-49138317|C/-|frameshift_variant	PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant	PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.1962585449219	3	374.195921	1119.56593	0.32602	0.000122	0.67896	0.00025406	1.005	0.00037606	374.1961283051413	28.439	0.48774	28.439	28.319	28.807	0					29	12	4	0	0	0	0.536	1	10039	10039		41.427	2.1738	1	880190			35985	6661	24628	24718	36429	36429					0.01093376961443937
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2098693847656	2	437.210378	872.406203	0.24426	0.00010679	-0.3861	-0.00016881	-0.14184	-6.2014E-05	437.21018325697617	28.191	0.23222	28.191	28.119	28.351	0					12	7	3	0	0	0	0.46905	1	8787	8787		63.306	15.391	1	129680			35986	1995	24629	24719	36430	36430					-0.03510409796740532
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2101745605469	2	437.210378	872.406203	0.62548	0.00027346	-1.5552	-0.00067994	-0.92971	-0.00040648	437.2098464845116	28.49	0.33353	28.49	28.407	28.741	0					14	8	3	0	0	0	0.27512	1	10067	10067		90.777	24.973	1	1095100			35987	1995	24629	24719	36431	36431					-0.03510409796740532
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.21099853515625	2	437.210378	872.406203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.261	1	28.261	27.761	28.761	0								0	0	0	1.7419	1	9094	9094		68.787	24.256	1				35988	1995	24629	24719	36432	36432					-0.03510409796740532
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.21038818359375	2	437.210378	872.406203	-0.92023	-0.00040233	0.25612	0.00011198	-0.66411	-0.00029036	437.21051377449953	28.237	0.14807	28.237	28.177	28.325	0					8	5	2	0	0	0	0.5676	1	9080	9080		53.351	10.877	1	91379			35989	1995	24629	24719	36433	36433					-0.03510409796740532
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2101745605469	2	437.210378	872.406203	-0.40813	-0.00017844	-0.0073262	-3.2031E-06	-0.41546	-0.00018164	437.2104114443273	28.491	0.26332	28.491	28.381	28.645	0					10	5	3	0	0	0	0.24915	1	10455	10455		102.77	31.395	1	492540			35990	1995	24629	24719	36434	36434					-0.03510409796740532
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2105407714844	2	437.210378	872.406203	0.28535	0.00012476	0.055689	2.4348E-05	0.34104	0.00014911	437.2104581691726	28.276	0.14254	28.276	28.21	28.353	0					5	3	2	0	0	0	0.24105	1	9367	9367		115.46	37.515	1	54222			35991	1995	24629	24719	36435	36435					-0.03510409796740532
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2102355957031	2	437.210378	872.406203	-0.63484	-0.00027756	0.73361	0.00032074	0.098777	4.3186E-05	437.2106690752781	28.288	0.14407	28.288	28.193	28.337	0					6	3	2	0	0	0	0.61938	1	9379	9379		45.952	8.7928	1	186220			35992	1995	24629	24719	36436	36436					-0.03510409796740532
SEVAMHSL	8	Unmodified	_SEVAMHSL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2100524902344	2	437.210378	872.406203	0.7216	0.00031549	-1.1785	-0.00051527	-0.45693	-0.00019977	437.2098494049466	28.452	0.36419	28.452	28.343	28.707	0					12	7	3	0	0	0	0.27512	1	10320	10320		90.777	19.481	1	924730			35993	1995	24629	24719	36437	36437					-0.03510409796740532
SEVCQQPVY	9	Unmodified	_SEVCQQPVY_					0	0	0		NUTM1|p.Q931Kfs*53|1|0.37|ENSG00000184507|chr15:34356879-34356879|C/-|frameshift_variant;nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1;NUTM1|p.K444Nfs*8|1|0.34|ENSG00000184507|chr15:34355070-34355070|A/-|frameshift_variant;NUTM1|p.G519Afs*26|2|0.3|ENSG00000184507|chr15:34355644-34355644|G/-|frameshift_variant;NUTM1|p.M697Wfs*28|1|0.12|ENSG00000184507|chr15:34356176-34356176|C/-|frameshift_variant	NUTM1|p.Q931Kfs*53|1|0.37|ENSG00000184507|chr15:34356879-34356879|C/-|frameshift_variant	NUTM1|p.Q931Kfs*53|1|0.37|ENSG00000184507|chr15:34356879-34356879|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7377319335938	2	526.739499	1051.46445	0.40594	0.00021383	-2.504	-0.001319	-2.0981	-0.0011051	526.7382979037384	40.288	0.24743	40.288	40.222	40.47	0					17	14	2	0	0	0	0.26904	1	13492	13492		53.351	7.3995	1	64110			35994	7020	24630	24720	36438	36438					-0.059227729421081676
SEVDRSNSL	9	Unmodified	_SEVDRSNSL_					0	0	0		PCDH18|p.R1037H|1|0.23|ENSG00000189184|chr4:137521327-137521327|C/T|missense_variant;nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	PCDH18|p.R1037H|1|0.23|ENSG00000189184|chr4:137521327-137521327|C/T|missense_variant	PCDH18|p.R1037H|1|0.23|ENSG00000189184|chr4:137521327-137521327|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7434997558594	2	503.743628	1005.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.998	1	21.998	21.498	22.498	0								0	0	0	0.039046	1	7077	7077		91.265	17.01	1				35995	7309	24631	24721	36439	36439					-0.029815027011409256
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.74908447265625	2	467.749336	933.484119	0.040983	1.917E-05	0.041932	1.9614E-05	0.082916	3.8784E-05	467.74938908522614	36.616	0.27473	36.616	36.529	36.804	0					20	15	2	0	0	0	0.29286	1	11998	11998		84.916	13.62	1	134840			35996	2934	24632	24722	36440	36440					0.014716030686599879
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7491760253906	2	467.749336	933.484119	0.33699	0.00015763	-1.3287	-0.00062148	-0.99168	-0.00046386	467.74894570166845	36.905	0.44554	36.905	36.784	37.23	0					26	12	3	0	0	0	0.2428	1	13947	13947		148.04	71.196	1	651740			35997	2934	24632	24722	36441	36441					0.014716030686599879
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7491455078125	2	467.749336	933.484119	-1.0447	-0.00048866	0.72611	0.00033964	-0.31859	-0.00014902	467.7496198951021	36.672	0.22939	36.672	36.592	36.822	0					19	12	2	0	0	0	0.6088	1	12410	12410		47.657	8.8512	1	136010			35998	2934	24632	24722	36442	36442					0.014716030686599879
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7489318847656	2	467.749336	933.484119	0.6436	0.00030104	-1.1204	-0.00052407	-0.47681	-0.00022303	467.7488469243488	36.897	0.35546	36.897	36.771	37.127	0					24	11	3	0	0	0	0.23895	1	14378	14378		134.81	52.506	1	760390			35999	2934	24632	24722	36443	36443					0.014716030686599879
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7493591308594	2	467.749336	933.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.66	1	36.66	36.16	37.16	0								0	0	0	1.7419	1	13123	13123		64.207	8.7031	1				36000	2934	24632	24722	36444	36444					0.014716030686599879
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.74969482421875	2	467.749336	933.484119	-0.72286	-0.00033812	-0.021019	-9.8316E-06	-0.74388	-0.00034795	467.74939131668236	36.663	0.20394	36.663	36.597	36.801	0					18	9	3	0	0	0	0.39125	1	13113	13113		71.877	14.066	1	150360			36001	2934	24632	24722	36445	36445					0.014716030686599879
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.74871826171875	2	467.749336	933.484119	-0.51055	-0.00023881	-0.81595	-0.00038166	-1.3265	-0.00062047	467.74931170339073	36.838	0.45543	36.838	36.681	37.137	0					21	9	3	0	0	0	0.22071	1	14336	14336		129.68	32.21	1	641450			36002	2934	24632	24722	36446	36446					0.014716030686599879
SEVELMKV	8	Unmodified	_SEVELMKV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7492980957031	2	467.749336	933.484119	0.59989	0.0002806	-1.4528	-0.00067956	-0.85294	-0.00039896	467.74876795383096	36.82	0.40658	36.82	36.713	37.12	0					20	8	3	0	0	0	0.24806	1	14330	14330		104.75	22.442	1	1180100			36003	2934	24632	24722	36447	36447					0.014716030686599879
SEVHSSPGV	9	Unmodified	_SEVHSSPGV_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.7164306640625	2	449.716882	897.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.083	1	19.083	18.583	19.583	0								0	0	0	0.32356	1	5112	5112		30.504	1.3336	1				36004	6911	24633	24723	36448	36448					-0.0336025541298568
SEVKLSVL	8	Unmodified	_SEVKLSVL_					0	0	0		nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS	nc|ENSG00000159267|P50747|HLCS	nc|ENSG00000159267|P50747|HLCS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.76605224609375	2	437.765843	873.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.356	1	38.356	37.856	38.856	0								0	0	0	1.7419	1	15074	15074		56.721	5.3856	1				36005	5306	24634	24724	36449	36449					0.0753155318300287
SEVKLTVA	8	Unmodified	_SEVKLTVA_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.75006103515625	2	423.750193	845.485833	-0.27231	-0.00011539	0.32335	0.00013702	0.051045	2.163E-05	423.75016803785763	29.013	0.20218	29.013	28.927	29.129	0					7	4	2	0	0	0	0.62915	1	10696	10696		44.377	1.981	1	91932			36006	1627	24635	24725	36450	36450					0.056909801489041456
SEVKLYSL	8	Unmodified	_SEVKLYSL_					0	0	0			REV__ENST00000506130.5_1_5:72853376-72858450:-|nuORF	REV__ENST00000506130.5_1_5:72853376-72858450:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.7646789550781	2	469.7633	937.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.468	1	37.468	36.968	37.968	0								0	0	0	1.7419	1	12271	12271		62.107	0	1		+		36007	19839	24636	24726	36451	36451					0.0407924932038668
SEVKLYSL	8	Unmodified	_SEVKLYSL_					0	0	0			REV__ENST00000506130.5_1_5:72853376-72858450:-|nuORF	REV__ENST00000506130.5_1_5:72853376-72858450:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7680358886719	2	469.7633	937.512048	-0.5295	-0.00024874	4.1595	0.001954	3.63	0.0017052	469.7657138212501	37.665	0.20496	37.665	37.565	37.77	0					7	4	2	0	0	0	0.34592	1	14733	14733		77.318	0	1	229810	+		36008	19839	24636	24726	36452	36452					0.0407924932038668
SEVKVTEL	8	Unmodified	_SEVKVTEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.75244140625	2	452.752933	903.491313	-0.11777	-5.3319E-05	-1.2327	-0.00055811	-1.3505	-0.00061143	452.7524949252995	30.79	0.18681	30.79	30.694	30.88	0					6	4	2	0	0	0	0.51931	1	11558	11558		58.23	8.7884	1	91860			36009	2078	24637	24727	36453	36453					0.035706589407254796
SEVKVTEL	8	Unmodified	_SEVKVTEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7525634765625	2	452.752933	903.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.764	1	30.764	30.264	31.264	0								0	0	0	1.7419	1	11426	11426		69.628	0.53466	1				36010	2078	24637	24727	36454	36454					0.035706589407254796
SEVKVVAV	8	Unmodified	_SEVKVVAV_					0	0	0		ARMCX5|p.N462Ifs*8|1|0.68|ENSG00000125962|chrX:102603522-102603522|A/-|frameshift_variant;ENSG00000125962|ENST00000473968|ARMCX5	ARMCX5|p.N462Ifs*8|1|0.68|ENSG00000125962|chrX:102603522-102603522|A/-|frameshift_variant	ARMCX5|p.N462Ifs*8|1|0.68|ENSG00000125962|chrX:102603522-102603522|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.7530517578125	2	415.752736	829.490919	0.50661	0.00021062	-0.12489	-5.1923E-05	0.38172	0.0001587	415.7526746081215	28.697	0.10431	28.697	28.614	28.719	0					4	2	2	0	0	0	0.49216	1	10163	10163		60.972	0	1	114840			36011	228	24638	24728	36455	36455					0.06935284011524345
SEVLLRSV	8	Unmodified	_SEVLLRSV_					0	0	0		nc|ENSG00000112175|P22003-2|BMP5;ENSG00000112175|ENST00000370830|BMP5	nc|ENSG00000112175|P22003-2|BMP5	nc|ENSG00000112175|P22003-2|BMP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7684631347656	2	451.768917	901.523281	0.66167	0.00029892	-1.2269	-0.00055429	-0.56525	-0.00025536	451.76824747943334	34.108	0.20052	34.108	34.067	34.268	0					9	5	2	0	0	0	0.25987	1	12684	12684		95.815	13.575	1	219420			36012	2719	24639	24729	36456	36456					0.06858071414524147
SEVLQTLQ	8	Unmodified	_SEVLQTLQ_					0	0	0		ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2500305175781	2	459.250557	916.486562	0.07141	3.2795E-05	-1.2269	-0.00056347	-1.1555	-0.00053067	459.2502786718389	22.065	0.22327	22.065	21.915	22.138	0					8	6	2	0	0	0	0.46905	1	6190	6190		63.306	0	1	247680			36013	5854	24640	24730	36457	36457					0.024977747979505693
SEVLTRDVL	9	Unmodified	_SEVLTRDVL_					0	0	0			REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant	REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2897338867188	2	516.290214	1030.56587	0.035434	1.8294E-05	-1.5987	-0.00082541	-1.5633	-0.00080712	516.2892508918261	36.047	0.12583	36.047	35.969	36.095	0					6	3	2	0	0	0	0.42902	1	13576	13576		39.253	0	1	123840	+		36014	12050	24641	24731	36458	36458					0.051814217520814054
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.7348327636719	2	499.734217	997.453881	-0.049798	-2.4886E-05	-0.30686	-0.00015335	-0.35666	-0.00017824	499.73412010803247	33.59	0.25881	33.59	33.521	33.779	0					21	10	3	0	0	0	0.087582	1	10930	10930		82.305	32.863	1	214380			36015	3827	24642	24732	36459	36459					-0.044947555965336505
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7346496582031	2	499.734217	997.453881	-0.18326	-9.1579E-05	0.58186	0.00029078	0.39861	0.0001992	499.7343266644734	33.871	0.45061	33.871	33.768	34.219	0					32	12	4	0	0	0	0.20551	1	12541	12541		60.972	30.468	1	876760			36016	3827	24642	24732	36460	36460					-0.044947555965336505
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.733642578125	2	499.734217	997.453881	-1.0368	-0.00051813	0.57949	0.00028959	-0.45733	-0.00022854	499.73444151941027	33.675	0.27666	33.675	33.593	33.869	0					23	10	3	0	0	0	0.26904	1	11312	11312		53.351	5.4358	1	313040			36017	3827	24642	24732	36461	36461					-0.044947555965336505
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7345886230469	2	499.734217	997.453881	0.87496	0.00043725	-1.0817	-0.00054055	-0.20672	-0.0001033	499.7336868885546	33.871	0.3923	33.871	33.753	34.146	0					14	9	2	0	0	0	0.26904	1	12976	12976		53.351	20.539	1	1390600			36018	3827	24642	24732	36462	36462					-0.044947555965336505
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7339172363281	2	499.734217	997.453881	-2.1542	-0.0010765	1.3586	0.00067892	-0.79562	-0.0003976	499.7350611161589	33.645	0.3271	33.645	33.521	33.848	0					19	9	3	0	0	0	0.20551	1	11800	11800		60.972	26.799	1	314360			36019	3827	24642	24732	36463	36463					-0.044947555965336505
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7337341308594	2	499.734217	997.453881	1.076	0.0005377	-1.3256	-0.00066243	-0.2496	-0.00012473	499.7334336964469	33.808	0.42213	33.808	33.583	34.005	0					16	9	3	0	0	0	0.20551	1	12901	12901		60.972	20.194	1	700910			36020	3827	24642	24732	36464	36464					-0.044947555965336505
SEVPLDQKEN	10	Unmodified	_SEVPLDQKEN_					0	0	0		COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	579.7863159179688	2	579.785492	1157.55643	-0.091041	-5.2784E-05	-0.22668	-0.00013143	-0.31772	-0.00018421	579.7853005130909	25.555	0.3054	25.555	25.429	25.734	0					23	10	4	0	0	0	0.64162	1	7945	7945		29.17	0	1	739980			36021	602	24643	24733	36465	36465					-0.016043913240764596
SEVPQQQFV	9	Unmodified	_SEVPQQQFV_					0	0	0			REV__nc|ENSG00000133101|P78396|CCNA1	REV__nc|ENSG00000133101|P78396|CCNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2674560546875	2	531.266739	1060.51892	2.4358	0.001294	-0.81178	-0.00043127	1.624	0.00086277	531.2660253917256	31.098	0.43028	31.098	30.955	31.385	0					22	10	3	0	0	0	0.48389	1	11289	11289		34.173	3.6689	1	257490	+		36022	21023	24644	24734	36466	36466					-0.008914377990549838
SEVQDRVML	9	Unmodified	_SEVQDRVML_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.7740478515625	2	538.773874	1075.53319	0.85207	0.00045907	-0.47426	-0.00025552	0.37781	0.00020356	538.7736016642224	34.02	0.26843	34.02	33.928	34.197	0					17	11	2	0	0	0	0.22837	1	11091	11091		58.23	12.278	1	118060			36023	3142	24645	24735	36467	36467					-0.001551086423887682
SEVQDRVML	9	Unmodified	_SEVQDRVML_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.774169921875	2	538.773874	1075.53319	0.24364	0.00013127	0.32354	0.00017432	0.56718	0.00030558	538.7741786351743	34.288	0.36059	34.288	34.132	34.493	0					25	9	4	0	0	0	0.076532	1	12751	12751		85.862	34.669	1	745100			36024	3142	24645	24735	36468	36468					-0.001551086423887682
SEVQDRVML	9	Unmodified	_SEVQDRVML_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7742309570312	2	538.773874	1075.53319	1.9269	0.0010382	-0.99644	-0.00053685	0.93049	0.00050133	538.773467466779	34.283	0.33112	34.283	34.173	34.504	0					23	8	4	0	0	0	0.063171	1	13206	13206		90.601	21.814	1	1097400			36025	3142	24645	24735	36469	36469					-0.001551086423887682
SEVQDRVML	9	Unmodified	_SEVQDRVML_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7743530273438	2	538.773874	1075.53319	-1.4676	-0.00079071	1.991	0.0010727	0.52337	0.00028198	538.7751527188932	34.041	0.30517	34.041	33.949	34.255	0					17	9	3	0	0	0	0.15163	1	12009	12009		67.494	16.301	1	152080			36026	3142	24645	24735	36470	36470					-0.001551086423887682
SEVRAWRR	8	Unmodified	_SEVRAWRR_					0	0	0			REV__ENST00000315872.10_1_2:11484324-11484654:-|nuORF	REV__ENST00000315872.10_1_2:11484324-11484654:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2939453125	2	530.293956	1058.57336	-1.2071	-0.00064013	1.3209	0.00070049	0.11382	6.036E-05	530.294516856021	16.375	0.29792	16.375	16.218	16.516	0					16	8	3	0	0	0	0.5535	1	3857	3857		44.117	3.3386	1	331050	+		36027	18301	24646	24736	36471	36471					0.046416188630246324
SEVSKIVTV	9	Unmodified	_SEVSKIVTV_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2818603515625	2	481.281857	960.549162	0.53258	0.00025632	-1.0753	-0.00051754	-0.54276	-0.00026122	481.2813427882694	33.343	0.32604	33.343	33.182	33.508	0					14	8	3	0	0	0	0.035106	1	12313	12313		104.01	34.386	1	514160			36028	5571	24647	24737	36472	36472					0.0673092086616407
SEVSKIVTV	9	Unmodified	_SEVSKIVTV_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.281982421875	2	481.281857	960.549162	-1.3525	-0.00065094	0.57832	0.00027834	-0.7742	-0.00037261	481.2821039819597	33.165	0.14368	33.165	33.072	33.216	0					9	6	2	0	0	0	0.18416	1	11100	11100		63.534	1.4264	1	136450			36029	5571	24647	24737	36473	36473					0.0673092086616407
SEVSKIVTV	9	Unmodified	_SEVSKIVTV_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.28167724609375	2	481.281857	960.549162	-0.10714	-5.1564E-05	0.28754	0.00013839	0.18041	8.6826E-05	481.2819858675797	33.364	0.19521	33.364	33.269	33.465	0					7	4	2	0	0	0	0.11898	1	12755	12755		75.043	12.936	1	211640			36030	5571	24647	24737	36474	36474					0.0673092086616407
SEVSKIVTV	9	Unmodified	_SEVSKIVTV_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2809753417969	2	481.281857	960.549162	0.68493	0.00032965	-1.5891	-0.00076479	-0.90414	-0.00043515	481.28104566387316	33.352	0.18158	33.352	33.22	33.402	0					10	4	3	0	0	0	0.076532	1	12750	12750		85.862	8.5442	1	431270			36031	5571	24647	24737	36475	36475					0.0673092086616407
SEVSKIVTV	9	Unmodified	_SEVSKIVTV_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2818298339844	2	481.281857	960.549162	0.10899	5.2455E-05	-0.54503	-0.00026231	-0.43604	-0.00020986	481.282013919226	33.133	0.097595	33.133	33.074	33.171	0					5	3	2	0	0	0	0.25761	1	11589	11589		54.722	10.345	1	45212			36032	5571	24647	24737	36476	36476					0.0673092086616407
SEVSKIVTV	9	Unmodified	_SEVSKIVTV_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.28228759765625	2	481.281857	960.549162	-0.29378	-0.00014139	-0.23115	-0.00011125	-0.52493	-0.00025264	481.28173327374355	33.129	0.16221	33.129	33.066	33.229	0					9	5	2	0	0	0	0.047855	1	11586	11586		96.034	16.321	1	76767			36033	5571	24647	24737	36477	36477					0.0673092086616407
SEVSKIVTV	9	Unmodified	_SEVSKIVTV_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2818908691406	2	481.281857	960.549162	-0.62986	-0.00030314	0.71582	0.00034451	0.085965	4.1373E-05	481.2821701882998	33.309	0.40986	33.309	33.107	33.517	0					15	8	3	0	0	0	0.22823	1	12635	12635		58.246	8.2217	1	415330			36034	5571	24647	24737	36478	36478					0.0673092086616407
SEVTAALRV	9	Unmodified	_SEVTAALRV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.271728515625	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.681	1	34.681	34.181	35.181	0								0	0	0	0.082437	1	11351	11351		76.774	26.75	1				36035	6014	24648	24738	36479	36479					0.05461169926195453
SEVTAALRV	9	Unmodified	_SEVTAALRV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2712707519531	2	473.271824	944.529095	0.24624	0.00011654	-0.8584	-0.00040625	-0.61215	-0.00028972	473.2714089454602	34.919	0.19413	34.919	34.811	35.005	0					11	5	3	0	0	0	0.056004	1	13044	13044		93.143	33.025	1	525300			36036	6014	24648	24738	36480	36480					0.05461169926195453
SEVTAALRV	9	Unmodified	_SEVTAALRV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2710876464844	2	473.271824	944.529095	-1.5414	-0.0007295	0.27924	0.00013216	-1.2622	-0.00059735	473.2720012725515	34.699	0.15736	34.699	34.635	34.792	0					12	7	2	0	0	0	0.11898	1	11717	11717		75.043	20.267	1	144910			36037	6014	24648	24738	36481	36481					0.05461169926195453
SEVTAALRV	9	Unmodified	_SEVTAALRV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2713317871094	2	473.271824	944.529095	0.5979	0.00028297	-3.4247	-0.0016208	-2.8268	-0.0013379	473.26951938223175	34.914	0.56277	34.914	34.727	35.29	0					41	16	3	0	0	0	0.056004	1	13492	13492		93.143	34.913	1	457370			36038	6014	24648	24738	36482	36482					0.05461169926195453
SEVTAALRV	9	Unmodified	_SEVTAALRV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2708435058594	2	473.271824	944.529095	-0.13901	-6.5791E-05	-0.10472	-4.9559E-05	-0.24373	-0.00011535	473.2712161420275	34.664	0.12859	34.664	34.579	34.708	0					5	3	2	0	0	0	0.15163	1	12300	12300		67.494	6.5217	1	42506			36039	6014	24648	24738	36483	36483					0.05461169926195453
SEVTAALRV	9	Unmodified	_SEVTAALRV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.27142333984375	2	473.271824	944.529095	0.65796	0.00031139	-1.791	-0.00084762	-1.133	-0.00053623	473.27056570973906	34.878	0.41187	34.878	34.767	35.179	0					22	8	4	0	0	0	0.085655	1	13424	13424		82.75	34.791	1	621290			36040	6014	24648	24738	36484	36484					0.05461169926195453
SEVTFALHSA	10	Unmodified	_SEVTFALHSA_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP;ENST00000461911.1_1_2:219132163-219134845:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2669677734375	2	531.266739	1060.51892	1.6875	0.0008965	-0.9998	-0.00053116	0.68768	0.00036534	531.266158043303	36.175	0.21681	36.175	36.064	36.281	0					9	4	3	0	0	0	0.056886	1	14047	14047		107.01	35.13	1	245330			36041	3518	24649	24739	36485	36485					-0.008914377990549838
SEVVDVAKL	9	Unmodified	_SEVVDVAKL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2737121582031	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.283	1	37.283	36.783	37.783	0								0	0	0	0.24544	1	12214	12214		44.377	3.599	1				36042	4676	24650	24740	36486	36486					0.05258634349092972
SEVVDVAKL	9	Unmodified	_SEVVDVAKL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2732849121094	2	480.274032	958.533512	0.49923	0.00023977	-1.6079	-0.00077222	-1.1086	-0.00053245	480.2731999476949	37.566	0.21825	37.566	37.462	37.68	0					13	6	3	0	0	0	0.063171	1	14243	14243		90.601	13.283	1	284220			36043	4676	24650	24740	36487	36487					0.05258634349092972
SEVVDVAKL	9	Unmodified	_SEVVDVAKL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2735595703125	2	480.274032	958.533512	0.674	0.00032371	-1.314	-0.00063108	-0.64001	-0.00030738	480.2733597451755	37.526	0.20403	37.526	37.455	37.659	0					14	6	3	0	0	0	0.01873	1	14675	14675		124.08	17.073	1	294160			36044	4676	24650	24740	36488	36488					0.05258634349092972
SEVVDVAKL	9	Unmodified	_SEVVDVAKL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2738342285156	2	480.274032	958.533512	-0.64472	-0.00030964	0.56079	0.00026933	-0.083929	-4.0309E-05	480.2741667697323	37.476	0.31191	37.476	37.315	37.627	0					12	6	3	0	0	0	0.037924	1	14665	14665		101.25	13.556	1	222860			36045	4676	24650	24740	36489	36489					0.05258634349092972
SEVVDVAKL	9	Unmodified	_SEVVDVAKL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.27374267578125	2	480.274032	958.533512	0.9313	0.00044728	-1.6476	-0.00079128	-0.71627	-0.00034401	480.27316820723644	37.463	0.30785	37.463	37.349	37.657	0					13	6	3	0	0	0	0.095583	1	14659	14659		80.455	12.961	1	382850			36046	4676	24650	24740	36490	36490					0.05258634349092972
SEVVNLSNK	9	Unmodified	_SEVVNLSNK_					0	0	0		ENST00000515081.1_1_4:56820464-56832049:+|nuORF;CEP135|p.R405Tfs*2|1|0.31|ENSG00000174799|chr4:55971370-55971371|AA/-|frameshift_variant;ENSG00000174799|ENST00000257287|CEP135	ENST00000515081.1_1_4:56820464-56832049:+|nuORF	ENST00000515081.1_1_4:56820464-56832049:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.26678466796875	2	495.266739	988.518924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.586	1	20.586	20.086	21.086	0								0	0	0	0.21054	1	5536	5536		49.442	5.3247	1				36047	478	24651	24741	36491	36491					0.024205622009503713
SEWVSCVRF	9	Carbamidomethyl (C)	_SEWVSC(Carbamidomethyl (C))VRF_	SEWVSC(1)VRF		SEWVSC(60)VRF		0	1	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000515417.5_1_5:180666387-180668514:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.2735595703125	2	585.274041	1168.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.538	1	44.538	44.038	45.038	0								0	0	0	0.14881	1	17842	17842		60.118	17.722	1				36048	7716	24652	24742	36492	36492	332				-0.04399688922558198
SEYDRGVNTF	10	Unmodified	_SEYDRGVNTF_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.270263671875	2	594.27001	1186.52547	0.13032	7.7443E-05	0.19301	0.0001147	0.32333	0.00019214	594.2699792801109	31.716	0.2007	31.716	31.646	31.847	0					19	9	3	0	0	0	0.28855	1	10208	10208		68.626	33.474	1	119830			36049	4525	24653	24743	36493	36493					-0.06033544638330568
SEYDRGVNTF	10	Unmodified	_SEYDRGVNTF_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.2700805664062	2	594.27001	1186.52547	0.2557	0.00015196	0.16556	9.839E-05	0.42127	0.00025035	594.2700348397694	31.975	0.37452	31.975	31.849	32.223	0					24	9	4	0	0	0	0.057264	1	11680	11680		106.88	38.093	1	989100			36050	4525	24653	24743	36494	36494					-0.06033544638330568
SEYDRGVNTF	10	Unmodified	_SEYDRGVNTF_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.2699584960938	2	594.27001	1186.52547	0.026747	1.5895E-05	0.54132	0.00032169	0.56807	0.00033759	594.2703590294112	31.985	0.24816	31.985	31.878	32.126	0					13	5	3	0	0	0	0.16075	1	12104	12104		84.817	44.039	1	845100			36051	4525	24653	24743	36495	36495					-0.06033544638330568
SEYDRGVNTF	10	Unmodified	_SEYDRGVNTF_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.27001953125	2	594.27001	1186.52547	-1.8055	-0.001073	2.1311	0.0012664	0.32551	0.00019344	594.2710809091956	31.746	0.22758	31.746	31.658	31.886	0					16	7	3	0	0	0	0.1998	1	10975	10975		79.489	14.024	1	146400			36052	4525	24653	24743	36496	36496					-0.06033544638330568
SEYGKAAVAF	10	Unmodified	_SEYGKAAVAF_					0	0	0		ENST00000580746.1_1_18:10526126-10532820:+|nuORF;NAPG|p.N182Kfs*4|1|0.28|ENSG00000134265|chr18:10546357-10546358|-/A|frameshift_variant;ENST00000582978.5_1_18:10526099-10540502:+|nuORF;ENSG00000134265|ENST00000322897|NAPG	ENST00000580746.1_1_18:10526126-10532820:+|nuORF	ENST00000580746.1_1_18:10526126-10532820:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7647094726562	2	521.763832	1041.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.491	1	33.491	32.991	33.991	0								0	0	0	0.29806	1	12389	12389		51.193	18.38	1				36053	3907	24654	24744	36497	36497					-0.005985363107356534
SEYIHAQVA	9	Unmodified	_SEYIHAQVA_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.25347900390625	2	509.253631	1016.49271	-0.017742	-9.0351E-06	-0.43285	-0.00022043	-0.4506	-0.00022947	509.2534964047758	27.525	0.13519	27.525	27.448	27.583	0					10	3	4	0	0	0	0.41113	1	9639	9639		40.778	0.20554	1	388070			36054	3276	24655	24745	36498	36498					-0.014877069705335089
SEYIHAQVA	9	Unmodified	_SEYIHAQVA_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2535400390625	2	509.253631	1016.49271	1.1709	0.00059627	-2.1192	-0.0010792	-0.94836	-0.00048296	509.25283817950475	27.532	0.26023	27.532	27.405	27.665	0					16	5	5	0	0	0	0.21263	1	9989	9989		60.118	7.1816	1	1450500			36055	3276	24655	24745	36499	36499					-0.014877069705335089
SEYIHAQVA	9	Unmodified	_SEYIHAQVA_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.25445556640625	2	509.253631	1016.49271	0.1983	0.00010099	0.34786	0.00017715	0.54616	0.00027814	509.2541737359378	27.351	0.2166	27.351	27.249	27.466	0					12	5	3	0	0	0	0.10915	1	8923	8923		77.318	27.782	1	129300			36056	3276	24655	24745	36500	36500					-0.014877069705335089
SEYIHAQVA	9	Unmodified	_SEYIHAQVA_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.25335693359375	2	509.253631	1016.49271	-1.8617	-0.00094806	1.4961	0.00076191	-0.36554	-0.00018615	509.25444128034576	27.329	0.13911	27.329	27.235	27.374	0					5	3	2	0	0	0	0.19605	1	8931	8931		62.107	17.991	1	335910			36057	3276	24655	24745	36501	36501					-0.014877069705335089
SEYPKNIKV	9	Unmodified	_SEYPKNIKV_					0	0	0		ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.30029296875	2	539.300581	1076.58661	0.68575	0.00036982	-0.0034446	-1.8577E-06	0.6823	0.00036797	539.300379333925	25.676	0.26575	25.676	25.514	25.78	0					10	4	3	0	0	0	0.17854	1	9009	9009		64.207	7.4862	1	247840			36058	5206	24656	24746	36502	36502					0.05138012131760661
SEYSVHSSL	9	Unmodified	_SEYSVHSSL_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;ENST00000468927.1_1_2:111423713-111425408:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.735595703125	2	504.735271	1007.45599	-0.053278	-2.6891E-05	1.6453	0.00083044	1.592	0.00080355	504.7360240935884	28.405	0.37415	28.405	28.152	28.526	0					9	4	3	0	0	0	0.35021	1	10042	10042		45.972	1.8554	1	333420			36059	330	24657	24747	36503	36503					-0.04744003587074985
SFAHLGVASWD	11	Unmodified	_SFAHLGVASWD_					0	0	0		ENST00000472910.5_1_7:105260689-105318420:-|nuORF	ENST00000472910.5_1_7:105260689-105318420:-|nuORF	ENST00000472910.5_1_7:105260689-105318420:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.28662109375	2	595.285463	1188.55637	0.19333	0.00011509	3.2231	0.0019186	3.4164	0.0020337	595.2872581103297	12.536	0.16961	12.536	12.434	12.603	0					10	5	3	0	0	0	0.80429	1	2652	2652		14.137	1.9303	1	275990			36060	9871	24658	24748	36504	36504					-0.030363465334176
SFAKKPKSK	9	Unmodified	_SFAKKPKSK_					0	0	0			REV__RAB11FIP2|p.P214Afs*17|1|0.1|ENSG00000107560|chr10:118040280-118040281|-/T|frameshift_variant	REV__RAB11FIP2|p.P214Afs*17|1|0.1|ENSG00000107560|chr10:118040280-118040281|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.87823486328125	3	340.878198	1019.61277	0.52746	0.0001798	-0.4082	-0.00013915	0.11926	4.0652E-05	340.87806965863854	19.701	0.21586	19.701	19.593	19.809	0					7	4	2	0	0	0	0.60851	1	6283	6283		20.837	0.80668	1	1449600	+		36061	21436	24659	24749	36505	36505					0.10374326093904074
SFALFHVFF	9	Unmodified	_SFALFHVFF_					0	0	0		ENST00000256682.8_1_12:49330571-49330871:-|nuORF	ENST00000256682.8_1_12:49330571-49330871:-|nuORF	ENST00000256682.8_1_12:49330571-49330871:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2489013671875	2	557.789653	1113.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.711	1	47.711	47.211	48.211	0								0	0	0	0.25856	1	19022	19022		42.474	8.9589	1				36062	8265	24660	24750	36506	36506					0.01251252173847206
SFCRARNGV	9	Unmodified	_SFCRARNGV_					0	0	0			REV__nc|ENSG00000109685|O96028-2|NSD2	REV__nc|ENSG00000109685|O96028-2|NSD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.25286865234375	2	505.253443	1008.49233	-0.32019	-0.00016178	-0.35968	-0.00018173	-0.67987	-0.00034351	505.25337854462424	38.785	0.41001	38.785	38.543	38.953	0					11	8	2	0	0	0	0.2873	1	15272	15272		51.335	17.82	1	156520	+		36063	20972	24661	24751	36507	36507					-0.011574051713637346
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.77886962890625	2	468.779285	935.544017	-0.43377	-0.00020334	-0.027428	-1.2858E-05	-0.4612	-0.0002162	468.7792333774249	18.565	0.40237	18.565	18.465	18.868	0					29	13	3	0	0	0	0.22389	1	4633	4633		127.46	28.832	1	5048400			36064	1161	24662	24752	36508	36508					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7793884277344	2	468.779285	935.544017	-0.63681	-0.00029852	0.57544	0.00026975	-0.061372	-2.877E-05	468.7795086447959	18.861	1.2208	18.861	18.75	19.971	0					59	29	3	0	0	0	0.22389	1	5596	5596		127.46	28.832	1	17559000			36065	1161	24662	24752	36509	36509					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.779052734375	2	468.779285	935.544017	-1.1406	-0.00053471	0.81586	0.00038246	-0.32478	-0.00015225	468.7796014214897	18.564	0.66037	18.564	18.466	19.126	0					38	21	3	0	0	0	0.22389	1	4865	4865		127.46	28.832	1	3914400			36066	1161	24662	24752	36510	36510					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7795715332031	2	468.779285	935.544017	-0.999	-0.00046831	0.79903	0.00037457	-0.19997	-9.3741E-05	468.77963232039536	18.554	0.16803	18.554	18.485	18.653	0					10	5	3	0	0	0	0.072348	1	4861	4861		161.9	53.811	1	1290300			36067	1161	24662	24752	36511	36511					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7793273925781	2	468.779285	935.544017	0.62942	0.00029506	-0.75259	-0.0003528	-0.12317	-5.7739E-05	468.7787653945472	18.802	1.0807	18.802	18.694	19.775	0					44	22	4	0	0	0	0.25798	1	5822	5822		139.97	29.851	1	14481000			36068	1161	24662	24752	36512	36512					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7791442871094	2	468.779285	935.544017	-1.0259	-0.00048093	0.72694	0.00034078	-0.29897	-0.00014015	468.77967282322453	18.81	0.63593	18.81	18.677	19.313	0					21	13	2	0	0	0	0.25798	1	5837	5837		139.97	29.851	1	2869600			36069	1161	24662	24752	36513	36513					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7789611816406	2	468.779285	935.544017	-2.1637	-0.0010143	1.5787	0.00074005	-0.58501	-0.00027424	468.77989351134613	18.641	0.62195	18.641	18.529	19.151	0					29	15	4	0	0	0	0.25798	1	4907	4907		139.97	41.341	1	3715400			36070	1161	24662	24752	36514	36514					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7791442871094	2	468.779285	935.544017	0.55559	0.00026045	1.8065	0.00084685	2.3621	0.0011073	468.7786648758841	18.819	0.24363	18.819	18.702	18.946	0					18	5	5	0	0	0	0.074162	1	5687	5687		162.25	48.841	1	1051800			36071	1161	24662	24752	36515	36515					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7790832519531	2	468.779285	935.544017	2.5963	0.0012171	-3.0899	-0.0014485	-0.49355	-0.00023137	468.7775842639281	18.803	1.6916	18.803	18.685	20.377	0					59	34	4	0	0	0	0.22389	1	5679	5679		127.46	28.832	1	8320700			36072	1161	24662	24752	36516	36516					0.07366661794173979
SFDKAKLKK	9	Unmodified	_SFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.55352783203125	3	355.553603	1063.63898	0.48913	0.00017391	-0.40169	-0.00014282	0.08744	3.109E-05	355.5533828683664	16.937	0.17193	16.937	16.846	17.018	0					10	4	3	0	0	0	0.4966	1	4700	4700		32.812	4.9302	1	577030			36073	1161	24663	24753	36517	36517					0.1097059526537123
SFDQKREQ	8	Unmodified	_SFDQKREQ_					0	0	0			REV__CNNM2|p.R600Q|1|0.38|ENSG00000148842|chr10:103054362-103054362|G/A|missense_variant	REV__CNNM2|p.R600Q|1|0.38|ENSG00000148842|chr10:103054362-103054362|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2543334960938	2	519.254163	1036.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.051	1	25.051	24.551	25.551	0								0	0	0	1.7419	1	7743	7743		29.15	2.3535	1		+		36074	12529	24664	24754	36518	36518					-0.023014926016230675
SFDRSATSGK	10	Unmodified	_SFDRSATSGK_					0	0	0			REV__nc|ENSG00000130921|Q9H3J6-2|MTRFR	REV__nc|ENSG00000130921|Q9H3J6-2|MTRFR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2576293945312	2	528.259445	1054.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.554	1	14.554	14.054	15.054	0								0	0	0	0.35072	1	3799	3799		42.864	7.246	1		+		36075	20121	24665	24755	36519	36519					-0.02073509947194907
SFDVMKQNPM	10	Unmodified	_SFDVMKQNPM_					0	0	0		nc|ENSG00000198075|O75897-2|SULT1C4;ENSG00000198075|ENST00000272452|SULT1C4;nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000198075|O75897-2|SULT1C4	nc|ENSG00000198075|O75897-2|SULT1C4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.7740478515625	2	598.775559	1195.53657	0.18642	0.00011162	-2.4043	-0.0014396	-2.2178	-0.001328	599.2754447063222	35.833	0.14567	35.833	35.775	35.921	0					8	4	2	0	0	0	0.61187	1	13912	13912		32.812	1.2826	1	110280			36076	7527	24666	24756	36520	36520					-0.053381818600655606
SFEDAKEAL	9	Unmodified	_SFEDAKEAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2455749511719	2	505.245472	1008.47639	0.7068	0.00035711	-0.034364	-1.7362E-05	0.67243	0.00033974	505.24522255729704	33.003	0.20393	33.003	32.913	33.117	0					15	9	2	0	0	0	0.048471	1	10699	10699		95.815	18.969	1	174410			36077	2879	24667	24757	36521	36521					-0.02750832927290503
SFEDAKEAL	9	Unmodified	_SFEDAKEAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2455749511719	2	505.245472	1008.47639	-0.071392	-3.607E-05	-0.052154	-2.635E-05	-0.12355	-6.2421E-05	505.24536707959146	32.993	0.26429	32.993	32.907	33.171	0					32	12	4	0	0	0	0.10506	1	10685	10685		78.264	23.487	1	691800			36078	2879	24667	24757	36522	36522					-0.02750832927290503
SFEDAKEAL	9	Unmodified	_SFEDAKEAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2453308105469	2	505.245472	1008.47639	0.80361	0.00040602	-0.66807	-0.00033754	0.13553	6.8477E-05	505.24506469613334	33.264	0.27919	33.264	33.147	33.426	0					17	7	3	0	0	0	0.015496	1	12276	12276		129.42	52.647	1	1098600			36079	2879	24667	24757	36523	36523					-0.02750832927290503
SFEDAKEAL	9	Unmodified	_SFEDAKEAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.24481201171875	2	505.245472	1008.47639	-0.048875	-2.4694E-05	-0.40908	-0.00020669	-0.45796	-0.00023138	505.24520137810805	33.256	0.39742	33.256	33.141	33.538	0					30	10	5	0	0	0	0.04067	1	12253	12253		98.582	26.705	1	4497500			36080	2879	24667	24757	36524	36524					-0.02750832927290503
SFEDAKEAL	9	Unmodified	_SFEDAKEAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.24493408203125	2	505.245472	1008.47639	0.11058	5.5872E-05	-0.17515	-8.8496E-05	-0.064571	-3.2624E-05	505.2454564481581	33.006	0.30118	33.006	32.927	33.229	0					25	9	4	0	0	0	0.04067	1	11531	11531		98.582	18.869	1	975300			36081	2879	24667	24757	36525	36525					-0.02750832927290503
SFENVRAK	8	Unmodified	_SFENVRAK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7560729980469	2	475.756341	949.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.241	1	20.241	19.741	20.741	0								0	0	0	1.7419	1	6247	6247		93.195	10.955	1				36082	4065	24668	24758	36526	36526					0.021360166119507085
SFENVRAK	8	Unmodified	_SFENVRAK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7560729980469	2	475.756341	949.498129	-0.11928	-5.6746E-05	-0.45815	-0.00021797	-0.57742	-0.00027471	475.75613052737634	20.088	0.11643	20.088	20.028	20.145	0					6	2	3	0	0	0	0.37144	1	6470	6470		74.255	0.28031	1	247550			36083	4065	24668	24758	36527	36527					0.021360166119507085
SFEQQDMKGDK	11	Unmodified	_SFEQQDMKGDK_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	656.797607421875	2	656.795534	1311.57652	2.734	0.0017957	0.1794	0.00011783	2.9134	0.0019135	656.7958177981376	15.57	0.31893	15.57	15.513	15.832	0					10	6	2	0	0	0	0.54277	1	4146	4146		38.754	0	1	869280	+		36084	17396	24669	24759	36528	36528					-0.06680963655776395
SFERVLVENK	10	Unmodified	_SFERVLVENK_					0	0	0		UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant;UNC80|p.N2032*|1|0.42|ENSG00000144406|chr2:209936855-209936856|-/T|frameshift_variant;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;UNC80|p.Q125Rfs*109|1|0.4|ENSG00000144406|chr2:209777327-209777327|C/-|frameshift_variant;nc|ENSG00000144406|Q8N2C7-3|UNC80;ENST00000478701.1_1_2:210636760-210659540:+|nuORF;UNC80|p.T791Nfs*17|1|0.38|ENSG00000144406|chr2:209825945-209825946|AA/-|frameshift_variant	UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant	UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.8355102539062	2	610.83532	1219.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.869	1	30.869	30.369	31.369	0								0	0	0	0.3805	1	11583	11583		36.447	0	1				36085	4614	24670	24760	36529	36529					0.05504471080530493
SFGGARSL	8	Unmodified	_SFGGARSL_					0	0	0			REV__ENST00000454225.1_1_X:71525242-71526668:-|nuORF	REV__ENST00000454225.1_1_X:71525242-71526668:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.7113037109375	2	397.711402	793.408252	0.08778	3.4911E-05	-0.26039	-0.00010356	-0.17261	-6.865E-05	397.71141395767313	24.03	0.21511	24.03	23.915	24.13	0					6	4	2	0	0	0	0.72524	1	8364	8364		30.318	0	1	133880	+		36086	19336	24671	24761	36530	36530					0.003283870033783387
SFGLHNAV	8	Unmodified	_SFGLHNAV_					0	0	0			REV__tr|U7SMS8|U7SMS8_FUSNUSigma-EfactornegativeregulatoryproteinRseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01807PE=4SV=1	REV__tr|U7SMS8|U7SMS8_FUSNUSigma-EfactornegativeregulatoryproteinRseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01807PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.71923828125	2	422.719227	843.423902	0.9927	0.00041963	-0.35114	-0.00014843	0.64157	0.0002712	422.71885006520336	14.42	0.21131	14.42	14.338	14.55	0					7	5	2	0	0	0	0.8006	1	3518	3518		20.482	0	1	186800	+		36087	21795	24672	24762	36531	36531					-0.004073264795806608
SFGMPCDP	8	Carbamidomethyl (C),Oxidation (M)	_SFGM(Oxidation (M))PC(Carbamidomethyl (C))DP_	SFGMPC(1)DP	SFGM(1)PCDP	SFGMPC(45)DP	SFGM(45)PCDP	0	1	1			REV__ENST00000342115.8_1_1:110174007-110174325:+|nuORF	REV__ENST00000342115.8_1_1:110174007-110174325:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.6717224121094	2	463.672771	925.330989	-1.0214	-0.00047358	-0.86449	-0.00040084	-1.8859	-0.00087442	463.6723308976289	20.357	0.16506	20.357	20.297	20.462	0					5	3	2	0	0	0	0.6282	1	6596	6596		44.531	7.372	1	239820	+		36088	18455	24673	24763	36532	36532	655	689			-0.13466335319481004
SFGNNIIAN	9	Unmodified	_SFGNNIIAN_					0	0	0			REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2419128417969	2	475.240524	948.466495	2.3179	0.0011016	0.18427	8.7575E-05	2.5022	0.0011892	475.24075768095014	22.513	0.51896	22.513	22.353	22.872	0					29	10	5	0	0	0	0.1115	1	7484	7484		76.774	76.774	1	9056000	+		36089	22057	24674	24764	36533	36533					-0.009799761420026698
SFGSSKKI	8	Unmodified	_SFGSSKKI_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.2424011230469	2	427.242535	852.470518	-0.48285	-0.00020629	0.51407	0.00021963	0.031216	1.3337E-05	427.24273820344337	33.9	0.35352	33.9	33.723	34.077	0					12	8	2	0	0	0	0.70055	1	13001	13001		33.516	3.674	1	41082	+		36090	15289	24675	24765	36534	36534					0.0383811335171913
SFHEGTDVI	9	Unmodified	_SFHEGTDVI_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;ENST00000591284.2_1_19:2133456-2164390:-|nuORF	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7375183105469	2	502.737814	1003.46108	-2.0645	-0.0010379	1.2565	0.00063168	-0.80798	-0.0004062	502.73845350822	32.462	0.20027	32.462	32.378	32.579	0					9	6	2	0	0	0	0.45358	1	11301	11301		37.159	2.9866	1	101110			36091	1361	24676	24766	36535	36535					-0.04051699724482205
SFHLIPNAIT	10	Unmodified	_SFHLIPNAIT_					0	0	0			REV__ENSG00000104884|ENST00000391945|ERCC2	REV__ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.8071899414062	2	556.808574	1111.60259	-0.14514	-8.0816E-05	-2.7535	-0.0015332	-2.8987	-0.001614	556.8071925821005	15.07	0.21973	15.07	14.96	15.18	0					6	4	2	0	0	0	0.61187	1	4059	4059		32.812	1.2826	1	192420	+		36092	13742	24677	24767	36536	36536					0.05125718368640264
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7648315429688	2	558.764697	1115.51484	1.7595	0.00098317	-1.5148	-0.00084642	0.24474	0.00013675	558.7639818547569	26.677	0.41781	26.677	26.56	26.978	0					22	8	4	0	0	0	0.019258	1	9583	9583		123.21	57.743	1	1063900			36093	5089	24678	24768	36537	36537					-0.038294825021012
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7652587890625	2	558.764697	1115.51484	1.111	0.00062077	-0.3082	-0.00017221	0.80276	0.00044856	558.7644917900826	26.514	0.27772	26.514	26.426	26.704	0					12	6	3	0	0	0	0.082776	1	8557	8557		83.647	32.454	1	242720			36094	5089	24678	24768	36538	36538					-0.038294825021012
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.765380859375	2	558.764697	1115.51484	1.8259	0.0010203	-1.1546	-0.00064517	0.6713	0.0003751	558.764070992538	26.645	0.46601	26.645	26.536	27.002	0					24	9	4	0	0	0	0.012936	1	9424	9424		134.77	63.47	1	2307600			36095	5089	24678	24768	36539	36539					-0.038294825021012
SFHVHSGAWV	10	Unmodified	_SFHVHSGAWV_					0	0	0		ENSG00000196431|ENST00000354760|CRYBA4	ENSG00000196431|ENST00000354760|CRYBA4	ENSG00000196431|ENST00000354760|CRYBA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.774169921875	2	563.775065	1125.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.135	1	13.135	12.635	13.635	0								0	0	0	0.4201	1	2675	2675		10.265	2.034	1				36096	7360	24679	24769	36540	36540					-0.022168921224192673
SFINLPTAL	9	Unmodified	_SFINLPTAL_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2789611816406	2	488.279118	974.543683	-0.38311	-0.00018707	0.23045	0.00011253	-0.15266	-7.4541E-05	488.27913090239895	43.897	0.32079	43.897	43.641	43.962	0					24	17	2	0	0	0	0.44593	1	16495	16495		37.812	0	1	79620			36097	4069	24680	24770	36541	36541					0.05539242074314643
SFIPKAGK	8	Unmodified	_SFIPKAGK_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.2552490234375	2	424.255446	846.496338	-1.1175	-0.00047411	0.79217	0.00033608	-0.32533	-0.00013802	424.2557430635387	24.019	0.28303	24.019	23.906	24.189	0					23	9	3	0	0	0	0.54629	1	7285	7285		55.504	0	1	846950			36098	11674	24681	24771	36542	36542					0.06695007593987157
SFIRCYTF	8	Carbamidomethyl (C)	_SFIRC(Carbamidomethyl (C))YTF_	SFIRC(1)YTF		SFIRC(53)YTF		0	1	0			REV__ENST00000497966.1_1_9:14683712-14690382:-|nuORF	REV__ENST00000497966.1_1_9:14683712-14690382:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2606811523438	2	547.260402	1092.50625	0.45311	0.00024797	0.25404	0.00013903	0.70715	0.000387	547.2604912228977	43.204	0.79852	43.204	42.796	43.594	0					79	44	2	0	0	0	0.5676	1	16360	16360		53.351	9.2347	1	203450	+		36099	19793	24682	24772	36543	36543	698				-0.03630172462953851
SFIRKDTK	8	Unmodified	_SFIRKDTK_					0	0	0			REV__tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	REV__tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7878723144531	2	497.787641	993.56073	-0.18385	-9.1518E-05	0.13138	6.5398E-05	-0.052474	-2.6121E-05	497.78770234188005	20.455	0.3101	20.455	20.366	20.677	0					19	7	5	0	0	0	0.5535	1	5785	5785		54.776	5.3348	1	1751100	+		36100	21963	24683	24773	36544	36544					0.06369162680141471
SFISPHKAK	9	Unmodified	_SFISPHKAK_					0	0	0		ENST00000507477.1_1_17:47778822-47778927:-|nuORF	ENST00000507477.1_1_17:47778822-47778927:-|nuORF	ENST00000507477.1_1_17:47778822-47778927:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.862548828125	3	338.862548	1013.56581	0.53088	0.0001799	-0.49432	-0.0001675	0.036565	1.239E-05	338.8622890321991	27.498	0.21253	27.498	27.389	27.601	0					7	4	2	0	0	0	0.45358	1	9980	9980		36.447	4.9169	1	422020			36101	10202	24684	24774	36545	36545					0.05957466542747625
SFISSKSN	8	Unmodified	_SFISSKSN_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2223815917969	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.721	1	33.721	33.221	34.221	0								0	0	0	1.7419	1	12928	12928		35.618	8.8222	1		+		36102	17290	24685	24775	36546	36546					-0.010430674076133073
SFKQRSDLF	9	Unmodified	_SFKQRSDLF_					0	0	0		ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.2957153320312	2	564.29583	1126.57711	3.4705	0.0019584	2.9464	0.0016626	6.4169	0.003621	564.2962179345471	30.123	0.66054	30.123	29.764	30.425	0					19	13	3	0	0	0	0.07136	1	11005	11005		87.696	13.441	1	868050			36103	5392	24686	24776	36547	36547					0.01888243846201476
SFKTADHSID	10	Unmodified	_SFKTADHSID_					0	0	0			REV__nc|ENSG00000120868|O14727-5|APAF1	REV__nc|ENSG00000120868|O14727-5|APAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7664794921875	2	560.767103	1119.51965	-0.88963	-0.00049888	-0.77312	-0.00043354	-1.6628	-0.00093242	560.7667336966902	26.78	0.86958	26.78	26.625	27.494	0					61	21	4	0	0	0	0.46128	1	8635	8635		49.536	5.4192	1	1925900	+		36104	12179	24687	24777	36548	36548					-0.03532643149992509
SFLIKKRF	8	Unmodified	_SFLIKKRF_					0	0	0			REV__SLC45A4|p.F801L|1|0.41|ENSG00000022567|chr8:141211596-141211596|G/T|missense_variant	REV__SLC45A4|p.F801L|1|0.41|ENSG00000022567|chr8:141211596-141211596|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.8245239257812	2	519.826569	1037.63859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.642	1	53.642	53.142	54.142	0								0	0	0	1.7419	1	20622	20622		24.203	0	1		+		36105	21536	24688	24778	36549	36549					0.12127220336174105
SFLSAPKTFP	10	Unmodified	_SFLSAPKTFP_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7997436523438	2	547.797675	1093.5808	3.8328	0.0020996	-0.83516	-0.0004575	2.9976	0.0016421	547.7973210808213	43.588	0.56911	43.588	43.463	44.032	0					53	18	5	0	0	0	0.49411	1	17407	17407		45.972	6.7194	1	13163000	+		36106	15266	24689	24779	36550	36550					0.03774913620077314
SFLSVLETGGL	11	Unmodified	_SFLSVLETGGL_					0	0	0		ENST00000258412.7_1_2:219140006-219140096:-|nuORF	ENST00000258412.7_1_2:219140006-219140096:-|nuORF	ENST00000258412.7_1_2:219140006-219140096:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.80615234375	2	561.805697	1121.59684	3.4693	0.0019491	-2.714	-0.0015247	0.75531	0.00042434	561.8042463155177	42.994	0.10342	42.994	42.919	43.023	0					5	3	2	0	0	0	0.11858	1	17191	17191		85.161	10.118	1	73883			36107	8275	24690	24780	36551	36551					0.04090575066356905
SFNDPLLIK	9	Unmodified	_SFNDPLLIK_					0	0	0			REV__KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant	REV__KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.79736328125	2	523.797675	1045.5808	0.03207	1.6798E-05	0.32027	0.00016775	0.35234	0.00018455	523.797743309655	38.101	0.30409	38.101	38.029	38.333	0					17	10	2	0	0	0	0.44593	1	14990	14990		37.812	3.639	1	1300500	+		36108	16272	24691	24781	36552	36552					0.059829136200733046
SFNLSLVKH	9	Unmodified	_SFNLSLVKH_					0	0	0			REV__nc|ENSG00000138757|Q9UN86-2|G3BP2	REV__nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.8659973144531	3	348.86607	1043.57638	1.4819	0.00051698	-1.8585	-0.00064838	-0.37666	-0.0001314	348.8653583732364	22.029	0.36729	22.029	21.919	22.287	0					15	7	3	0	0	0	0.24095	1	7280	7280		46.457	2.806	1	1527100	+		36109	15000	24692	24782	36553	36553					0.056334491971938405
SFNTGSAVIY	10	Unmodified	_SFNTGSAVIY_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7604370117188	2	529.761289	1057.50803	1.7348	0.00091905	-3.084	-0.0016338	-1.3492	-0.00071474	529.7597087151181	35.643	0.44365	35.643	35.352	35.796	0					26	12	3	0	0	0	0.44601	1	13803	13803		51.193	0	1	678860			36110	7396	24693	24783	36554	36554					-0.01842840173321747
SFNTWISQR	9	Unmodified	_SFNTWISQR_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.7855834960938	2	569.78563	1137.55671	0.86212	0.00049123	-0.31847	-0.00018146	0.54366	0.00030977	569.7852084235662	26.57	0.21654	26.57	26.477	26.694	0					8	4	3	0	0	0	0.16002	1	9521	9521		66.429	16.988	1	189130	+		36111	16169	24694	24784	36555	36555					-0.0065692681357631955
SFPESARPK	9	Unmodified	_SFPESARPK_					0	0	0		KMT2D|p.S4955F|1|0.28|ENSG00000167548|chr12:49027102-49027102|G/A|missense_variant	KMT2D|p.S4955F|1|0.28|ENSG00000167548|chr12:49027102-49027102|G/A|missense_variant	KMT2D|p.S4955F|1|0.28|ENSG00000167548|chr12:49027102-49027102|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2721252441406	2	509.769448	1017.52434	1.3562	0.00069137	2.2269	0.0011352	3.5831	0.0018266	509.77070681927	42.829	0.37928	42.829	42.581	42.96	0					25	11	3	0	0	0	0.2873	1	17106	17106		51.335	0	1	284370			36112	11262	24695	24785	36556	36556					0.01628285783431238
SFPGGPEF	8	Unmodified	_SFPGGPEF_					0	0	0		nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.19268798828125	2	419.192511	836.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.695	1	37.695	37.195	38.195	0								0	0	0	1.7419	1	14759	14759		33.516	5.2613	1				36113	11795	24696	24786	36557	36557					-0.05426123982090303
SFPILGHSY	9	Unmodified	_SFPILGHSY_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.26141357421875	2	510.761092	1019.50763	-0.41977	-0.0002144	3.0999	0.0015833	2.6801	0.0013689	510.7622004934485	37.735	0.35948	37.735	37.649	38.008	0					22	19	2	0	0	0	0.39215	1	12759	12759		42.396	1.618	1	124980			36114	7821	24697	24787	36558	36558					-0.001342151025255589
SFPVTTAVAA	10	Unmodified	_SFPVTTAVAA_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-3|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.26025390625	2	482.260925	962.507297	0.047917	2.3109E-05	-3.595	-0.0017337	-3.5471	-0.0017106	482.2595383698025	14.205	0.074664	14.205	14.163	14.238	0					6	3	2	0	0	0	0.54197	1	2889	2889		40.778	5.1599	1	67559	+		36115	20939	24698	24788	36559	36559					0.02454365177618456
SFQASSTQSQK	11	Unmodified	_SFQASSTQSQK_					0	0	0		ENST00000525183.1_1_11:75852185-75852305:+|nuORF	ENST00000525183.1_1_11:75852185-75852305:+|nuORF	ENST00000525183.1_1_11:75852185-75852305:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	599.7874755859375	2	599.788566	1197.56258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.055	1	24.055	23.555	24.555	0								0	0	0	0.40723	1	7045	7045		26.063	6.0666	1				36116	10357	24699	24789	36560	36560					-0.028298730925598647
SFQLVLSAG	9	Unmodified	_SFQLVLSAG_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.25604248046875	2	461.255643	920.496732	-0.84752	-0.00039092	0.38472	0.00017745	-0.4628	-0.00021347	461.25582780929835	28.781	0.45153	28.781	28.463	28.915	0					22	17	2	0	0	0	0.39215	1	9293	9293		42.396	0	1	49015	+		36117	21218	24700	24790	36561	36561					0.0333038252319966
SFQPSLKLL	9	Unmodified	_SFQPSLKLL_					0	0	0			REV__ENST00000485155.1_1_2:63816129-63821744:+|nuORF	REV__ENST00000485155.1_1_2:63816129-63821744:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	344.8727722167969	3	344.874454	1031.60153	0.19753	6.8124E-05	-4.3426	-0.0014977	-4.1451	-0.0014295	344.87293150558514	24.754	0.11774	24.754	24.677	24.795	0					7	3	3	0	0	0	0.51991	1	7363	7363		30.318	3.2704	1	54449	+		36118	19649	24701	24791	36562	36562					0.08699503999741864
SFQRVELL	8	Unmodified	_SFQRVELL_					0	0	0		nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2;ENSG00000197885|ENST00000425478|NKIRAS1	nc|ENSG00000168256|Q9NYR9-2|NKIRAS2	nc|ENSG00000168256|Q9NYR9-2|NKIRAS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2820129394531	2	496.282192	990.549831	-0.35977	-0.00017855	-0.53516	-0.00026559	-0.89493	-0.00044414	496.28218273737843	41.958	0.084087	41.958	41.92	42.004	0					7	4	2	0	0	0	0.67394	1	15926	15926		37.159	1.5408	1	54349			36119	6074	24702	24792	36563	36563					0.054177603058633395
SFRKRHFW	8	Unmodified	_SFRKRHFW_					0	0	0			REV__nc|ENSG00000186038|A5X5Y0-2|HTR3E	REV__nc|ENSG00000186038|A5X5Y0-2|HTR3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.3151245117188	2	582.314692	1162.61483	-0.3232	-0.00018821	-0.74553	-0.00043413	-1.0687	-0.00062234	582.3141920915041	32.287	0.33718	32.287	32.064	32.401	0					13	7	2	0	0	0	0.70055	1	12191	12191		33.516	0.70317	1	39926	+		36120	17063	24703	24793	36564	36564					0.040027996223670925
SFRQEKIL	8	Unmodified	_SFRQEKIL_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7955322265625	2	510.795466	1019.57638	-0.42666	-0.00021794	0.2551	0.0001303	-0.17156	-8.7631E-05	510.7955813847231	37.187	0.18668	37.187	37.109	37.296	0					7	5	2	0	0	0	0.53424	1	14536	14536		56.721	1.9447	1	99068			36121	1350	24704	24794	36565	36565					0.06737449197191836
SFRTAMLS	8	Unmodified	_SFRTAMLS_					0	0	0			REV__nc|ENSG00000265972|Q9H3M7-2|TXNIP	REV__nc|ENSG00000265972|Q9H3M7-2|TXNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.73321533203125	2	456.73402	911.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.848	1	36.848	36.348	37.348	0								0	0	0	1.7419	1	12473	12473		38.806	0	1		+		36122	21243	24705	24795	36566	36566					-0.005781305257528402
SFSEAHSEF	9	Unmodified	_SFSEAHSEF_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7198486328125	2	520.719621	1039.42469	0.07072	3.6825E-05	-0.22831	-0.00011889	-0.15759	-8.2063E-05	520.7196039560395	30.523	0.27062	30.523	30.432	30.703	0					10	6	2	0	0	0	0.036372	1	11023	11023		102.77	22.834	1	473720			36123	5960	24706	24796	36567	36567					-0.09344576621174383
SFSFSSYPVT	10	Unmodified	_SFSFSSYPVT_					0	0	0			REV__ENST00000369063.7_1_6:107076974-107077166:-|nuORF	REV__ENST00000369063.7_1_6:107076974-107077166:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2632446289062	2	561.261122	1120.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.533	1	56.533	56.033	57.033	0								0	0	0	0.38797	1	21185	21185		34.173	11.13	1		+		36124	18619	24707	24797	36568	36568					-0.047742598932018154
SFSHRLLVA	9	Unmodified	_SFSHRLLVA_					0	0	0			REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000198838|Q15413-3|RYR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2949829101562	2	515.295633	1028.57671	1.1939	0.00061522	-2.27	-0.0011697	-1.0761	-0.00055451	515.2946073302661	38.789	0.11563	38.789	38.736	38.851	0					6	4	2	0	0	0	0.53083	1	14757	14757		29.15	4.9468	1	68949	+		36125	17439	24708	24798	36569	36569					0.06356868917032443
SFSKAMASL	9	Unmodified	_SFSKAMASL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2409973144531	2	471.241678	940.468803	-2.346	-0.0011055	1.374	0.00064751	-0.97193	-0.00045801	471.24221038872827	29.239	0.24869	29.239	29.13	29.379	0					9	6	2	0	0	0	0.48389	1	9826	9826		34.173	0.25091	1	125090			36126	6416	24709	24799	36570	36570					-0.003812637285591336
SFSKGCDPCKY	11	Unmodified	_SFSKGCDPCKY_					0	0	0			REV__ENSG00000180938|ENST00000319286|ZNF572	REV__ENSG00000180938|ENST00000319286|ZNF572	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	617.7664794921875	2	617.765191	1233.51583	1.0956	0.00067683	-1.3129	-0.00081107	-0.2173	-0.00013424	617.7646977235597	37.514	0.30064	37.514	37.328	37.629	0					15	9	2	0	0	0	0.51875	1	14711	14711		42.864	3.6114	1	61554	+		36127	16831	24710	24800	36571	36571					-0.09158772239720747
SFSRAAAAMAP	11	Unmodified	_SFSRAAAAMAP_					0	0	0		nc|ENSG00000126432|P30044-3|PRDX5;ENSG00000126432|ENST00000265462|PRDX5;nc|ENSG00000126432|P30044-4|PRDX5	nc|ENSG00000126432|P30044-3|PRDX5	nc|ENSG00000126432|P30044-3|PRDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.269775390625	2	540.268758	1078.52296	0.30662	0.00016566	0.97631	0.00052747	1.2829	0.00069313	540.2692929830288	28.951	0.2576	28.951	28.846	29.104	0					9	5	2	0	0	0	0.56817	1	10653	10653		39.253	0.49923	1	320880			36128	3473	24711	24801	36572	36572					-0.013156715770037408
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.269775390625	2	541.269281	1080.52401	1.0493	0.00056796	-0.44613	-0.00024147	0.60318	0.00032648	541.2690899274503	26.879	0.22558	26.879	26.787	27.012	0					19	7	4	0	0	0	0.079477	1	8210	8210		68.846	28.068	1	513910			36129	3954	24712	24802	36573	36573					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	361.181884765625	3	361.181946	1080.52401	0.11272	4.0714E-05	-0.21732	-7.8492E-05	-0.1046	-3.7779E-05	361.1818418658692	26.876	0.25559	26.876	26.811	27.067	0					17	8	3	0	0	0	0.30841	1	8212	8212		49.536	6.6718	1	524160			36130	3954	24712	24802	36574	36574					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2695922851562	2	541.269281	1080.52401	0.28955	0.00015672	0.2751	0.0001489	0.56465	0.00030563	541.2692944932977	27.123	0.46102	27.123	26.999	27.46	0					26	11	4	0	0	0	0.017741	1	9424	9424		109.48	18.702	1	3847900			36131	3954	24712	24802	36575	36575					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2683715820312	2	541.269281	1080.52401	0.097785	5.2928E-05	0.13193	7.141E-05	0.22972	0.00012434	541.2693498577858	26.898	0.28584	26.898	26.794	27.08	0					20	10	3	0	0	0	0.079477	1	8491	8491		78.264	6.9681	1	542170			36132	3954	24712	24802	36576	36576					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.269287109375	2	541.269281	1080.52401	2.0131	0.0010896	-0.9812	-0.00053109	1.0319	0.00055855	541.2681732764938	27.118	0.80714	27.118	27.008	27.815	0					52	16	5	0	0	0	0.021035	1	9795	9795		104.01	16.259	1	4005400			36133	3954	24712	24802	36577	36577					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.26953125	2	541.269281	1080.52401	-1.4837	-0.00080309	2.3401	0.0012666	0.85637	0.00046352	541.2703422614951	26.934	0.48048	26.934	26.852	27.333	0					25	12	4	0	0	0	0.017741	1	8735	8735		109.48	27.173	1	897730			36134	3954	24712	24802	36578	36578					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2693481445312	2	541.269281	1080.52401	3.5271	0.0019091	-2.9206	-0.0015808	0.60654	0.0003283	541.2673533652002	27.086	0.82858	27.086	26.968	27.797	0					47	16	5	0	0	0	0.024312	1	9639	9639		98.582	2.3916	1	8697800			36135	3954	24712	24802	36579	36579					-0.01303133936426093
SFSYLFLK	8	Unmodified	_SFSYLFLK_					0	0	0			REV__ENSG00000132952|ENST00000255304|USPL1	REV__ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7756652832031	2	502.776211	1003.53787	-0.88969	-0.00044731	-3.2667	-0.0016424	-4.1564	-0.0020897	503.27516793748737	28.426	0.29403	28.426	28.204	28.499	0					27	10	4	0	0	0	0.5676	1	9115	9115		53.351	12.573	1	153700	+		36136	14686	24713	24803	36580	36580					0.03624143562649351
SFTLFLLLAP	10	Unmodified	_SFTLFLLLAP_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.5566711425781	3	374.558354	1120.65323	-0.35376	-0.0001325	-4.0363	-0.0015118	-4.3901	-0.0016443	374.55701568119076	36.948	0.16462	36.948	36.829	36.994	0					8	3	3	0	0	0	0.63224	1	14388	14388		30.318	6.795	1	63989			36137	1115	24714	24804	36581	36581					0.09773247693647136
SFTRTRRTP	9	Unmodified	_SFTRTRRTP_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.3121337890625	2	561.312346	1120.61014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.078	1	43.078	42.578	43.578	0								0	0	0	0.3245	1	16281	16281		10.866	6.5493	1		+		36138	15529	24715	24805	36582	36582					0.05465870688931318
SFVHAGREAM	10	Oxidation (M)	_SFVHAGREAM(Oxidation (M))_		SFVHAGREAM(1)		SFVHAGREAM(51)	0	0	1			REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7661743164062	2	560.76384	1119.51313	3.4702	0.0019459	0.0051787	2.904E-06	3.4753	0.0019488	560.7640043844199	27.027	3.2082	27.027	26.722	29.93	0					151	64	5	0	0	0	0.44601	1	9905	9905		51.193	8.7966	1	24674000	+		36139	13103	24716	24806	36583	36583		506			-0.04184859582369427
SFVVATKGSE	10	Unmodified	_SFVVATKGSE_					0	0	0			REV__TPH2|p.Y450Tfs*8|1|0.07|ENSG00000139287|chr12:72031567-72031567|C/-|frameshift_variant	REV__TPH2|p.Y450Tfs*8|1|0.07|ENSG00000139287|chr12:72031567-72031567|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.26513671875	2	512.769114	1023.52368	-0.046754	-2.3974E-05	-3.4806	-0.0017847	-3.5273	-0.0018087	512.7689646798125	34.999	0.24154	34.999	34.831	35.072	0					18	10	3	0	0	0	0.25899	1	11485	11485		72.243	5.814	1	120090	+		36140	15019	24717	24807	36584	36584					0.012854463437065533
SFVVATKGSE	10	Unmodified	_SFVVATKGSE_					0	0	0			REV__TPH2|p.Y450Tfs*8|1|0.07|ENSG00000139287|chr12:72031567-72031567|C/-|frameshift_variant	REV__TPH2|p.Y450Tfs*8|1|0.07|ENSG00000139287|chr12:72031567-72031567|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2681274414062	2	512.769114	1023.52368	0.010824	5.55E-06	-4.479	-0.0022967	-4.4682	-0.0022912	513.2678316148734	35.279	0.68994	35.279	35.061	35.751	0					38	18	4	0	0	0	0.48965	1	13215	13215		46.457	0.50483	1	705980	+		36141	15019	24717	24807	36585	36585					0.012854463437065533
SFWLQLVQ	8	Unmodified	_SFWLQLVQ_					0	0	0		chr19:41709823-41807111|324|15.1|0.37|5.36|+|1|None,CEACAM3|1;chr19:41709823-41761249|324|15.5|0.38|5.35|+|1|None,CEACAM6|1;CEACAM5|p.E47Dfs*25|1|0.39|ENSG00000105388|chr19:41709755-41709756|-/T|frameshift_variant	chr19:41709823-41807111|324|15.1|0.37|5.36|+|1|None,CEACAM3|1	chr19:41709823-41807111|324|15.1|0.37|5.36|+|1|None,CEACAM3|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7808532714844	2	510.779285	1019.54402	3.0678	0.0015669	0.46711	0.00023859	3.5349	0.0018055	510.7794309951277	44.093	0.2597	44.093	44.002	44.262	0					22	11	3	0	0	0	0.50061	1	17646	17646		58.782	9.3404	1	266280			36142	465	24718	24808	36586	36586					0.035026617941980476
SFYVGKLY	8	Unmodified	_SFYVGKLY_					0	0	0		ENST00000561328.1_1_15:60734582-60741127:-|nuORF	ENST00000561328.1_1_15:60734582-60741127:-|nuORF	ENST00000561328.1_1_15:60734582-60741127:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7599792480469	2	488.760561	975.506569	-0.40987	-0.00020033	-1.2239	-0.0005982	-1.6338	-0.00079853	488.7600379262326	28.403	0.98972	28.403	27.779	28.769	0					52	24	4	0	0	0	0.61938	1	9950	9950		45.952	10.334	1	1778900			36143	10708	24719	24809	36587	36587					0.01783570528573364
SFYYSIKF	8	Unmodified	_SFYYSIKF_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7647094726562	2	527.765843	1053.51713	-1.1917	-0.00062895	-0.6543	-0.00034532	-1.846	-0.00097427	527.7654811241933	38.774	0.27987	38.774	38.687	38.967	0					31	14	3	0	0	0	0.65276	1	13838	13838		40.573	2.7611	1	384140	+		36144	16838	24720	24810	36588	36588					-0.0074844681698778
SGAAVLQLQF	10	Unmodified	_SGAAVLQLQF_					0	0	0		nc|ENSG00000145087|Q9Y2K9|STXBP5L;ENSG00000145087|ENST00000471454|STXBP5L;STXBP5L|p.L120V|1|0.4|ENSG00000145087|chr3:121041770-121041770|T/G|missense_variant	nc|ENSG00000145087|Q9Y2K9|STXBP5L	nc|ENSG00000145087|Q9Y2K9|STXBP5L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2886962890625	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.014	1	42.014	41.514	42.514	0								0	0	0	0.39244	1	15939	15939		32.812	0	1				36145	4654	24721	24811	36589	36589					0.04541742960282136
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7608947753906	2	450.761092	899.507631	0.64367	0.00029014	-1.2982	-0.00058517	-0.65451	-0.00029503	450.7605570281985	22.348	0.54161	22.348	21.99	22.531	0					20	12	4	0	0	0	0.0040239	1	7231	7231		162.64	29.878	1	1952100			36146	2347	24722	24812	36590	36590					0.05385784897475787
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7608947753906	2	450.761092	899.507631	-0.10481	-4.7243E-05	-2.2534	-0.0010157	-2.3582	-0.001063	450.7608611953679	22.249	0.60658	22.249	22.07	22.677	0					31	12	4	0	0	0	0.00054273	1	7477	7477		187.5	42.348	1	1540800			36147	2347	24722	24812	36591	36591					0.05385784897475787
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7610778808594	2	450.761092	899.507631	0.4773	0.00021515	-0.21607	-9.7398E-05	0.26123	0.00011775	450.7608897372957	22.093	0.27634	22.093	21.957	22.233	0					10	6	2	0	0	0	0.037712	1	6494	6494		101.46	18.709	1	176120			36148	2347	24722	24812	36592	36592					0.05385784897475787
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7607421875	2	450.761092	899.507631	-0.17045	-7.6834E-05	0.23392	0.00010544	0.063464	2.8607E-05	450.7611864197884	22.069	0.18209	22.069	21.988	22.17	0					7	4	2	0	0	0	0.19891	1	6510	6510		61.765	20.338	1	87830			36149	2347	24722	24812	36593	36593					0.05385784897475787
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.76104736328125	2	450.761092	899.507631	-0.40398	-0.0001821	0.10709	4.8272E-05	-0.29689	-0.00013382	450.7611721072308	22.246	0.36653	22.246	22.089	22.455	0					16	7	4	0	0	0	0.01077	1	7354	7354		139.38	29.904	1	1781200			36150	2347	24722	24812	36594	36594					0.05385784897475787
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7607727050781	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.21	1	22.21	21.71	22.71	0								0	0	0	0.0076242	1	7350	7350		112.3	29.545	1				36151	2347	24722	24812	36595	36595					0.05385784897475787
SGATIRIFK	9	Unmodified	_SGATIRIFK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7980041503906	2	496.798009	991.581465	-0.059033	-2.9327E-05	-0.49674	-0.00024678	-0.55578	-0.00027611	496.7977998716922	28.91	0.28265	28.91	28.814	29.097	0					17	10	3	0	0	0	0.10506	1	9062	9062		78.264	3.2205	1	172320			36152	2047	24723	24813	36596	36596					0.0853375305979398
SGATIRIFK	9	Unmodified	_SGATIRIFK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7981872558594	2	496.798009	991.581465	-0.32871	-0.0001633	0.18289	9.0861E-05	-0.14582	-7.2441E-05	496.7981030867598	29.201	0.3323	29.201	29.073	29.406	0					24	8	4	0	0	0	0.020674	1	10391	10391		120.87	5.4095	1	1538900			36153	2047	24723	24813	36597	36597					0.0853375305979398
SGATIRIFK	9	Unmodified	_SGATIRIFK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	331.5344543457031	3	331.534431	991.581465	0.52351	0.00017356	-0.68435	-0.00022689	-0.16084	-5.3323E-05	331.53419896641486	29.204	0.5402	29.204	29.073	29.614	0					27	13	3	0	0	0	0.071197	1	10392	10392		104.06	43.939	1	1521000			36154	2047	24723	24813	36598	36598					0.0853375305979398
SGATIRIFK	9	Unmodified	_SGATIRIFK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.79779052734375	2	496.798009	991.581465	-1.1709	-0.00058169	1.0612	0.0005272	-0.10968	-5.449E-05	496.7984604793342	28.924	0.2894	28.924	28.851	29.141	0					18	11	2	0	0	0	0.25761	1	9361	9361		54.722	5.2808	1	241970			36155	2047	24723	24813	36599	36599					0.0853375305979398
SGATIRIFK	9	Unmodified	_SGATIRIFK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.79779052734375	2	496.798009	991.581465	0.77055	0.00038281	-1.6147	-0.00080219	-0.84416	-0.00041938	496.79731639813696	29.151	0.42142	29.151	29.007	29.429	0					27	9	4	0	0	0	0.037712	1	10773	10773		101.46	19.219	1	1653500			36156	2047	24723	24813	36600	36600					0.0853375305979398
SGAVLSKK	8	Unmodified	_SGAVLSKK_					0	0	0		ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENST00000413631.1_1_13:111590511-111591024:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	395.2449951171875	2	395.245078	788.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.65	1	11.65	11.15	12.15	0								0	0	0	1.7419	1	2220	2220		47.916	0	1				36157	9337	24724	24814	36601	36601					0.07290417214335321
SGDDIIIIE	9	Unmodified	_SGDDIIIIE_					0	0	0			REV__ENST00000466152.5_1_20:49557422-49575060:-|nuORF	REV__ENST00000466152.5_1_20:49557422-49575060:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7561950683594	2	487.755672	973.496792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.733	1	32.733	32.233	33.233	0								0	0	0	0.19749	1	10941	10941		51.335	0	1		+		36158	12808	24725	24815	36602	36602					0.008983377325307629
SGDLEIGAGVL	11	Unmodified	_SGDLEIGAGVL_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7738647460938	2	515.774396	1029.53424	1.3132	0.00067733	-0.98146	-0.00050621	0.33177	0.00017112	515.7739000646017	28.396	0.11012	28.396	28.34	28.451	0					5	3	2	0	0	0	0.5473	1	8864	8864		40.778	0.20554	1	59158	+		36159	17221	24726	24816	36603	36603					0.020654289981621332
SGDSVMAKAL	10	Unmodified	_SGDSVMAKAL_					0	0	0			REV__ENST00000535150.1_1_6:131486241-131520610:+|nuORF	REV__ENST00000535150.1_1_6:131486241-131520610:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7496643066406	2	489.749867	977.485181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.128	1	30.128	29.628	30.628	0								0	0	0	0.3805	1	9569	9569		36.447	1.2947	1		+		36160	12129	24727	24817	36604	36604					-0.004461825624616722
SGEARKSLKRK	11	Unmodified	_SGEARKSLKRK_					0	0	0			REV__BRINP3|p.W279Cfs*28|1|0.27|ENSG00000162670|chr1:190226206-190226206|C/-|frameshift_variant	REV__BRINP3|p.W279Cfs*28|1|0.27|ENSG00000162670|chr1:190226206-190226206|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.5903015136719	3	420.589599	1258.74697	1.0486	0.00044101	0.69056	0.00029044	1.7391	0.00073145	420.589899559793	23.491	0.34966	23.491	23.401	23.751	0					24	8	5	0	0	0	0.61747	1	7794	7794		35.496	4.9268	1	4901400	+		36161	12299	24728	24818	36605	36605					0.12794359848658132
SGEARKSLKRK	11	Unmodified	_SGEARKSLKRK_					0	0	0			REV__BRINP3|p.W279Cfs*28|1|0.27|ENSG00000162670|chr1:190226206-190226206|C/-|frameshift_variant	REV__BRINP3|p.W279Cfs*28|1|0.27|ENSG00000162670|chr1:190226206-190226206|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.5906066894531	3	420.589599	1258.74697	3.4003	0.0014301	-1.0773	-0.0004531	2.323	0.00097704	420.58913569295044	23.242	0.2302	23.242	23.155	23.385	0					13	7	4	0	0	0	0.37395	1	6959	6959		54.343	7.1157	1	193840	+		36162	12299	24728	24818	36606	36606					0.12794359848658132
SGEKISSWQ	9	Unmodified	_SGEKISSWQ_					0	0	0		AFP|p.N348Ifs*22|1|0.38|ENSG00000081051|chr4:73447655-73447655|A/-|frameshift_variant	AFP|p.N348Ifs*22|1|0.38|ENSG00000081051|chr4:73447655-73447655|A/-|frameshift_variant	AFP|p.N348Ifs*22|1|0.38|ENSG00000081051|chr4:73447655-73447655|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.1698303222656	3	341.169818	1020.48762	-1.9405	-0.00066203	2.2028	0.00075153	0.26235	8.9504E-05	341.17061362573133	15.336	0.12034	15.336	15.255	15.375	0					5	3	2	0	0	0	0.61124	1	3428	3428		12.207	0.57075	1	206740			36163	88	24729	24819	36607	36607					-0.021800108331490264
SGEMGKTK	8	Oxidation (M)	_SGEM(Oxidation (M))GKTK_		SGEM(1)GKTK		SGEM(77)GKTK	0	0	1			REV__ENSG00000103351|ENST00000576634|CLUAP1	REV__ENSG00000103351|ENST00000576634|CLUAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.2080078125	2	427.207835	852.401117	0.26196	0.00011191	-0.30176	-0.00012891	-0.039795	-1.7001E-05	427.2076781057064	16.413	0.14151	16.413	16.345	16.487	0					9	5	2	0	0	0	0.35045	1	3714	3714		76.774	7.928	1	147240	+		36164	13676	24730	24820	36608	36608		521			-0.03098713659369423
SGEVENNSDN	10	Unmodified	_SGEVENNSDN_					0	0	0		TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B;ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF	TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant	TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7122802734375	2	532.709982	1063.40541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.533	1	11.533	11.033	12.033	0								0	0	0	0.4201	1	2241	2241		14.137	3.8719	1				36165	7931	24731	24821	36609	36609					-0.12375577702755436
SGEVPAVEETV	11	Unmodified	_SGEVPAVEETV_					0	0	0		ENSG00000120889|ENST00000276431|TNFRSF10B	ENSG00000120889|ENST00000276431|TNFRSF10B	ENSG00000120889|ENST00000276431|TNFRSF10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2761840820312	2	558.774593	1115.53463	0.52607	0.00029395	0.35582	0.00019883	0.88189	0.00049278	558.775060102474	37.78	0.4316	37.78	37.451	37.882	0					18	13	2	0	0	0	0.7326	1	14334	14334		24.519	2.5593	1	78461			36166	3199	24732	24822	36610	36610					-0.018511960726755206
SGFAGVYFEK	10	Unmodified	_SGFAGVYFEK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;nc|ENSG00000102100|P78381-5|SLC35A2;ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000102100|P78381-2|SLC35A2	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.77099609375	2	552.771657	1103.52876	1.596	0.00088223	-2.617	-0.0014466	-1.0209	-0.00056435	552.769839117312	40.206	0.33573	40.206	40.111	40.447	0					24	13	3	0	0	0	0.45669	1	15830	15830		50.034	4.0816	1	99250			36167	3049;2155	24733	24823	36611	36611					-0.018862497936879663
SGFCSTLGSS	10	Unmodified	_SGFCSTLGSS_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2027587890625	2	473.20275	944.390947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.327	1	17.327	16.827	17.827	0								0	0	0	0.38797	1	4113	4113		34.173	0	1		+		36168	17610	24734	24824	36612	36612					-0.0834732138457639
SGFEGMFTK	9	Unmodified	_SGFEGMFTK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.23077392578125	2	502.23131	1002.44807	-0.044765	-2.2482E-05	-0.13006	-6.532E-05	-0.17482	-8.7802E-05	502.2313058365318	39.57	0.24858	39.57	39.483	39.732	0					36	14	3	0	0	0	0.14578	1	12829	12829		68.846	17.653	1	305490			36169	5044	24735	24825	36613	36613					-0.053058541082123156
SGFEGMFTK	9	Unmodified	_SGFEGMFTK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.23089599609375	2	502.23131	1002.44807	-0.073437	-3.6883E-05	-0.32605	-0.00016375	-0.39949	-0.00020064	502.23122567304057	39.878	0.41166	39.878	39.79	40.201	0					41	15	4	0	0	0	0.032383	2	15174	15174;15289		106.68	41.218	1	2303300			36170	5044	24735	24825	36614;36615	36614					-0.053058541082123156
SGFEGMFTK	9	Unmodified	_SGFEGMFTK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2309265136719	2	502.23131	1002.44807	-0.9206	-0.00046236	0.86321	0.00043353	-0.057399	-2.8828E-05	502.2318870575145	39.679	0.32718	39.679	39.595	39.922	0					48	18	4	0	0	0	0.070005	1	13315	13315		88.177	29.947	1	840140			36171	5044	24735	24825	36616	36616					-0.053058541082123156
SGFEGMFTK	9	Unmodified	_SGFEGMFTK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2309875488281	2	502.23131	1002.44807	0.9758	0.00049008	-1.3087	-0.00065726	-0.33288	-0.00016718	502.23079402379955	39.86	0.58973	39.86	39.732	40.322	0					67	21	5	0	0	0	0.0088974	1	15672	15672		143.37	55.619	1	4869300			36172	5044	24735	24825	36617	36617					-0.053058541082123156
SGFEGMFTK	9	Unmodified	_SGFEGMFTK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2313232421875	2	502.23131	1002.44807	0.13825	6.9432E-05	-0.31998	-0.0001607	-0.18173	-9.1272E-05	502.2313021466701	39.678	0.32165	39.678	39.563	39.884	0					43	16	4	0	0	0	0.10506	1	14119	14119		78.264	25.327	1	711200			36173	5044	24735	24825	36618	36618					-0.053058541082123156
SGFEGMFTK	9	Unmodified	_SGFEGMFTK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2312927246094	2	502.23131	1002.44807	1.1479	0.00057653	-1.7151	-0.00086139	-0.56719	-0.00028486	502.2306310272883	39.828	0.54214	39.828	39.686	40.229	0					44	12	5	0	0	0	0.0055674	1	15759	15759		155.58	59.769	1	7449300			36174	5044	24735	24825	36619	36619					-0.053058541082123156
SGFQIQKKK	9	Unmodified	_SGFQIQKKK_					0	0	0			REV__ENST00000510832.5_1_4:189458328-189458415:+|nuORF	REV__ENST00000510832.5_1_4:189458328-189458415:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.2134704589844	3	355.213469	1062.61858	0.31221	0.0001109	-0.47085	-0.00016725	-0.15864	-5.6351E-05	355.21335044413837	25.252	0.22068	25.252	25.155	25.375	0					10	4	3	0	0	0	0.51991	1	8934	8934		30.318	0	1	248330	+		36175	19871	24736	24826	36620	36620					0.0897742460556401
SGFQQFTGFL	10	Unmodified	_SGFQQFTGFL_					0	0	0			REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	REV__USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.8546142578125	3	377.85383	1130.53966	0.81066	0.00030631	0.93851	0.00035462	1.7492	0.00066093	377.85425939523765	32.986	0.16457	32.986	32.865	33.03	0					5	4	2	0	0	0	0.60281	1	12173	12173		33.922	5.3449	1	205810	+		36176	14112	24737	24827	36621	36621					-0.02038847419362355
SGGEPLLE	8	Unmodified	_SGGEPLLE_					0	0	0			REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.2042236328125	2	401.203076	800.391599	1.8321	0.00073503	1.7109	0.00068642	3.543	0.0014214	401.2036184061433	34.689	0.16555	34.689	34.617	34.782	0					11	7	2	0	0	0	0.8006	1	11353	11353		20.482	0	1	55760	+		36177	12302	24738	24828	36622	36622					-0.016581586732399956
SGGEQPIPL	9	Unmodified	_SGGEQPIPL_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.2377624511719	2	449.23745	896.460347	0.13252	5.9535E-05	0.2334	0.00010485	0.36592	0.00016438	449.2375557635043	29.188	0.29433	29.188	29.057	29.351	0					12	7	2	0	0	0	0.2873	1	10441	10441		51.335	1.3109	1	158410			36178	4282	24739	24829	36623	36623					0.007975056264740488
SGGGGGDH	8	Unmodified	_SGGGGGDH_					0	0	0		sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1;sp|F5HC97|VPAP_HCMVMDNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL44PE=3SV=1	sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.1273193359375	2	322.12516	642.235767	1.5188	0.00048924	0.79524	0.00025617	2.314	0.00074541	322.12667594267407	42.323	0.41204	42.323	42.074	42.486	0					53	20	3	0	0	0	0.78122	1	16547	16547		8.2313	3.5495	1	349980			36179	22442	24740	24830	36624	36624					-0.09966184403992884
SGGGHRHL	8	Unmodified	_SGGGHRHL_					0	0	0		ENST00000343632.8_1_22:38004484-38004634:+|nuORF	ENST00000343632.8_1_22:38004484-38004634:+|nuORF	ENST00000343632.8_1_22:38004484-38004634:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.71337890625	2	410.712268	819.409983	2.9558	0.001214	0.27333	0.00011226	3.2292	0.0013263	410.71230413098516	42.809	0.82198	42.809	42.535	43.357	0					42	25	3	0	0	0	0.65276	1	17044	17044		40.573	1.5511	1	373300			36180	8750	24741	24831	36625	36625					-0.006945591880253232
SGGITAVPL	9	Unmodified	_SGGITAVPL_					0	0	0		BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.7366638183594	2	407.737086	813.459619	-1.3981	-0.00057005	1.4699	0.00059934	0.071842	2.9293E-05	407.73749003376133	29.037	0.30968	29.037	28.88	29.19	0					33	12	3	0	0	0	0.32741	1	9383	9383		47.916	1.9434	1	351360			36181	326	24742	24832	36626	36626					0.04542710977432307
SGGKAERAIR	10	Unmodified	_SGGKAERAIR_					0	0	0			REV__ENST00000250937.7_1_19:3490986-3491331:-|nuORF	REV__ENST00000250937.7_1_19:3490986-3491331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.800537109375	2	522.799072	1043.58359	0.43991	0.00022998	2.0224	0.0010573	2.4623	0.0012873	522.8004737303239	35.879	0.098053	35.879	35.814	35.912	0					7	4	2	0	0	0	0.6796	1	12134	12134		24.519	2.8334	1	66491	+		36182	17965	24743	24833	36627	36627					0.06354181797587444
SGGLFASIAI	10	Unmodified	_SGGLFASIAI_					0	0	0		ENST00000337338.9_1_1:90398692-90398947:+|nuORF	ENST00000337338.9_1_1:90398692-90398947:+|nuORF	ENST00000337338.9_1_1:90398692-90398947:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.26348876953125	2	468.263468	934.512382	0.63726	0.00029841	-0.65384	-0.00030617	-0.016582	-7.7647E-06	468.26309733932715	45.404	0.15361	45.404	45.3	45.454	0					14	9	2	0	0	0	0.51121	1	17558	17558		44.117	1.7207	1	173920			36183	8704	24744	24834	36628	36628					0.04250669040209232
SGGLGAPL	8	Unmodified	_SGGLGAPL_					0	0	0			REV__ENST00000575894.1_1_16:697728-698187:+|nuORF	REV__ENST00000575894.1_1_16:697728-698187:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.19091796875	2	336.189771	670.36499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.307	1	31.307	30.807	31.807	0								0	0	0	1.7419	1	10763	10763		21.702	1.2205	1		+		36184	20413	24745	24835	36629	36629					0.01662197226085027
SGGPLIVHK	9	Unmodified	_SGGPLIVHK_					0	0	0		ENSG00000243649|ENST00000425368|CFB;ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2713623046875	2	454.271627	906.528701	-0.3562	-0.00016181	-0.1541	-7.0001E-05	-0.51029	-0.00023181	454.27149320526394	20.342	0.25902	20.342	20.231	20.49	0					19	8	3	0	0	0	0.037569	1	5416	5416		101.6	5.4103	1	387500			36185	7954	24746	24836	36630	36630					0.07169794996991641
SGGPLIVHK	9	Unmodified	_SGGPLIVHK_					0	0	0		ENSG00000243649|ENST00000425368|CFB;ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2715148925781	2	454.271627	906.528701	-0.56159	-0.00025511	0.32021	0.00014546	-0.24138	-0.00010965	454.2717686073939	20.693	0.29798	20.693	20.594	20.892	0					21	6	4	0	0	0	0.014688	1	6470	6470		131.03	48.791	1	2271900			36186	7954	24746	24836	36631	36631					0.07169794996991641
SGGPLIVHK	9	Unmodified	_SGGPLIVHK_					0	0	0		ENSG00000243649|ENST00000425368|CFB;ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.27154541015625	2	454.271627	906.528701	-1.1084	-0.00050353	0.92478	0.0004201	-0.18366	-8.3429E-05	454.27206216374594	20.418	0.15265	20.418	20.315	20.468	0					9	4	3	0	0	0	0.17854	1	5693	5693		64.207	7.4862	1	184630			36187	7954	24746	24836	36632	36632					0.07169794996991641
SGGPLIVHK	9	Unmodified	_SGGPLIVHK_					0	0	0		ENSG00000243649|ENST00000425368|CFB;ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2713623046875	2	454.271627	906.528701	-0.47464	-0.00021561	-0.22056	-0.00010019	-0.6952	-0.00031581	454.27152072070277	20.604	0.26844	20.604	20.495	20.764	0					13	5	3	0	0	0	0.012915	1	6714	6714		134.81	26.723	1	920490			36188	7954	24746	24836	36633	36633					0.07169794996991641
SGGRIHNLKTQ	11	Unmodified	_SGGRIHNLKTQ_					0	0	0		ENSG00000177627|ENST00000548364|C12orf54	ENSG00000177627|ENST00000548364|C12orf54	ENSG00000177627|ENST00000548364|C12orf54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.2278137207031	3	404.226549	1209.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.273	1	22.273	21.773	22.773	0								0	0	0	0.4462	1	7515	7515		26.75	8.9166	1				36189	6677	24747	24837	36634	36634					0.0613752488911814
SGGWLPLELGP	11	Unmodified	_SGGWLPLELGP_					0	0	0			REV__ENST00000335464.9_1_17:72833969-72834278:+|nuORF	REV__ENST00000335464.9_1_17:72833969-72834278:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	375.86834716796875	3	375.86948	1124.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.248	1	14.248	13.748	14.748	0								0	0	0	0.45674	1	2908	2908		24.232	0.85391	1		+		36190	18409	24748	24838	36635	36635					0.029300121317419325
SGGWPNGLTV	10	Unmodified	_SGGWPNGLTV_					0	0	0		LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2477722167969	2	494.248349	986.482145	0.042187	2.0851E-05	-0.84954	-0.00041988	-0.80735	-0.00039903	494.2478344267217	28.829	0.18564	28.829	28.75	28.936	0					6	4	2	0	0	0	0.52275	1	9641	9641		42.864	0.46813	1	145320			36191	3316	24749	24839	36636	36636					-0.011636896249569872
SGILNSTNIQ	10	Unmodified	_SGILNSTNIQ_					0	0	0		nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-4|PRC1	nc|ENSG00000198901|O43663-4|PRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7815551757812	2	523.77747	1045.54039	1.0232	0.00053591	-0.56396	-0.00029539	0.4592	0.00024052	523.7770838060591	18.216	0.37096	18.216	18.105	18.476	0					22	7	4	0	0	0	0.62235	1	5638	5638		31.53	2.3598	1	3053200			36192	7637	24750	24840	36637	36637					0.019439472296653548
SGKFKSDAF	9	Unmodified	_SGKFKSDAF_					0	0	0		tr|U7SSN0|U7SSN0_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01321PE=4SV=1	tr|U7SSN0|U7SSN0_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01321PE=4SV=1	tr|U7SSN0|U7SSN0_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01321PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7508239746094	2	493.750724	985.486896	-0.068393	-3.3769E-05	0.14476	7.1475E-05	0.076368	3.7707E-05	493.750427877665	29.046	0.18849	29.046	28.971	29.16	0					14	7	3	0	0	0	0.46194	1	9115	9115		36.447	1.2947	1	113230			36193	22746	24751	24841	36638	36638					-0.006428054821981277
SGKGKSGV	8	Unmodified	_SGKGKSGV_					0	0	0			REV__nc|ENSG00000165623|P07492-3|GRP	REV__nc|ENSG00000165623|P07492-3|GRP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.20654296875	2	360.205953	718.397353	3.1024	0.0011175	-0.98512	-0.00035485	2.1173	0.00076267	360.2054857865037	48.671	0.6656	48.671	48.463	49.129	0					78	36	3	0	0	0	0.78216	1	19304	19304		8.8223	1.132	1	1030300	+		36194	21100	24752	24842	36639	36639					0.026889846290941932
SGKPGAPGP	9	Unmodified	_SGKPGAPGP_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1;REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.20599365234375	2	384.205953	766.397353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.663	1	30.663	30.163	31.163	0								0	0	0	0.37496	1	11080	11080		18.324	2.6882	1				36195	1675;12548	24753	24843	36640	36640					0.004809846290982023
SGLAKRLAN	9	Unmodified	_SGLAKRLAN_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586;KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2795104980469	2	465.279983	928.545414	-1.1909	-0.00055409	0.76731	0.00035701	-0.42356	-0.00019708	465.2801908823563	50.529	0.21847	50.529	50.444	50.663	0					18	13	2	0	0	0	0.61124	1	15186	15186		19.997	1.6724	1	58027			36196	6064	24754	24844	36641	36641					0.07828295882939074
SGLDTFVAR	9	Unmodified	_SGLDTFVAR_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2572326660156	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.154	1	15.154	14.654	15.654	0								0	0	0	0.3428	1	3240	3240		26.693	2.4902	1		+		36197	15451	24755	24845	36642	36642					0.014125968920893683
SGLENIKKL	9	Unmodified	_SGLENIKKL_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5376892089844	3	334.537842	1000.5917	-0.010783	-3.6074E-06	-0.24551	-8.2131E-05	-0.25629	-8.5739E-05	334.53774902909777	25.857	0.40124	25.857	25.667	26.068	0					10	6	2	0	0	0	0.61124	1	9077	9077		32.812	4.9302	1	402970			36198	5052	24756	24846	36643	36643					0.09142315994370165
SGLESIISII	10	Unmodified	_SGLESIISII_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.5380859375	3	344.537619	1030.59103	0.52078	0.00017943	0.58215	0.00020057	1.1029	0.00038	344.53798919468636	24.335	0.26672	24.335	24.18	24.447	0					10	5	3	0	0	0	0.65051	1	8519	8519		28.081	4.5588	1	195880			36199	6178	24757	24847	36644	36644					0.0769547655468159
SGLFKTHRR	9	Unmodified	_SGLFKTHRR_					0	0	0		ENST00000375608.7_2_13:113548693-113669133:+|nuORF	ENST00000375608.7_2_13:113548693-113669133:+|nuORF	ENST00000375608.7_2_13:113548693-113669133:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	367.88037109375	3	367.880713	1100.62031	0.07839	2.8838E-05	-1.5563	-0.00057254	-1.4779	-0.0005437	367.8800828565482	13.469	0.085929	13.469	13.41	13.496	0					7	4	2	0	0	0	0.51817	1	2651	2651		37.812	13.292	1	72560			36200	9032	24758	24848	36645	36645					0.07402478414178404
SGLGVEDLK	9	Unmodified	_SGLGVEDLK_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.74456787109375	2	459.250557	916.486562	0.87841	0.00040341	1.0897	0.00050044	1.9681	0.00090384	459.2499820095659	22.278	0.3155	22.278	22.071	22.387	0					20	6	6	0	0	0	0.33044	1	7374	7374		47.657	6.8792	1	1631200			36201	8104	24759	24849	36646	36646					0.024977747979392007
SGLLIRGQTG	10	Unmodified	_SGLLIRGQTG_					0	0	0		ENST00000586719.5_1_19:12883476-12885666:-|nuORF;ENST00000589965.5_1_19:12876298-12886263:-|nuORF;ENST00000589134.5_1_19:12885194-12886263:-|nuORF;ENST00000590839.5_1_19:12883046-12889158:-|nuORF	ENST00000586719.5_1_19:12883476-12885666:-|nuORF	ENST00000586719.5_1_19:12883476-12885666:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2918701171875	2	501.290548	1000.56654	0.17221	8.6325E-05	0.35473	0.00017782	0.52693	0.00026415	501.2907679622691	49.232	1.0942	49.232	49.021	50.115	0					79	65	2	0	0	0	0.67464	1	16208	16208		14.137	0	1	73733			36202	10905	24760	24850	36647	36647					0.06628261191804086
SGLLLHGPPG	10	Unmodified	_SGLLLHGPPG_					0	0	0		nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-3|PEX6	nc|ENSG00000124587|Q13608-3|PEX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.26837158203125	2	474.269084	946.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.995	1	18.995	18.495	19.495	0								0	0	0	0.37816	1	5070	5070		37.159	5.2042	1				36203	3387	24761	24851	36648	36648					0.048214911343848144
SGLPKTKASV	10	Unmodified	_SGLPKTKASV_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.86590576171875	3	329.865958	986.576045	0.38952	0.00012849	-0.6447	-0.00021266	-0.25517	-8.4173E-05	329.865722653321	26.585	0.21834	26.585	26.526	26.744	0					6	4	2	0	0	0	0.57532	1	9542	9542		41.427	0	1	406120	+		36204	14769	24762	24852	36649	36649					0.08222029477326487
SGLPPPPRAA	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGLPPPPRAA_					1	0	0			REV__ENST00000396203.6_1_3:40498851-40498923:+|nuORF	REV__ENST00000396203.6_1_3:40498851-40498923:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.779541015625	2	502.779816	1003.54508	0.062182	3.1264E-05	-0.46404	-0.00023331	-0.40186	-0.00020204	502.7794643177341	34.507	0.12801	34.507	34.424	34.552	0					7	3	3	0	0	0	0.39566	1	13315	13315		56.721	6.6965	1	185150	+		36205	18895	24763	24853	36650	36650					0.043448761630770605
SGLQVQDIIK	10	Unmodified	_SGLQVQDIIK_					0	0	0		FGD3|p.V430I|1|0.34|ENSG00000127084|chr9:93018148-93018148|G/A|missense_variant	FGD3|p.V430I|1|0.34|ENSG00000127084|chr9:93018148-93018148|G/A|missense_variant	FGD3|p.V430I|1|0.34|ENSG00000127084|chr9:93018148-93018148|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.8203735351562	2	550.819138	1099.62372	1.527	0.0008411	0.54152	0.00029828	2.0685	0.0011394	550.8192391514602	35.118	0.18229	35.118	35.049	35.231	0					14	8	3	0	0	0	0.58308	1	11508	11508		36.318	3.5671	1	96679			36206	11137	24764	24854	36651	36651					0.07789683677515313
SGLSLLERL	9	Unmodified	_SGLSLLERL_					0	0	0		ENSG00000152990|ENST00000334304|ADGRA3;ENST00000514129.5_2_4:22444476-22475438:-|nuORF;ADGRA3|p.L367Sfs*98|1|0.04|ENSG00000152990|chr4:22436621-22436627|CCTGCCA/-|frameshift_variant;nc|ENSG00000152990|Q8IWK6-2|ADGRA3	ENSG00000152990|ENST00000334304|ADGRA3	ENSG00000152990|ENST00000334304|ADGRA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.8662414550781	3	329.865958	986.576045	3.6773	0.001213	-3.5243	-0.0011625	0.15306	5.0489E-05	329.8649116910282	26.372	0.11053	26.372	26.286	26.396	0					5	3	2	0	0	0	0.61124	1	8288	8288		25.574	0	1	30002			36207	5029	24765	24855	36652	36652					0.08222029477337855
SGLSMKAQAI	10	Unmodified	_SGLSMKAQAI_					0	0	0		COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2713623046875	2	503.273509	1004.53247	-2.0491	-0.0010313	-3.3996	-0.0017109	-5.4487	-0.0027422	503.2713331884039	29.917	0.22433	29.917	29.794	30.018	0					9	6	2	0	0	0	0.2978	1	10092	10092		67.494	5.3863	1	119490			36208	586	24766	24856	36653	36653					0.03038096708530702
SGLSTNMK	8	Unmodified	_SGLSTNMK_					0	0	0			REV__ENST00000256646.6_1_1:120457631-120457709:-|nuORF	REV__ENST00000256646.6_1_1:120457631-120457709:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	419.2101135253906	2	419.210378	836.406203	-0.045222	-1.8958E-05	-0.20444	-8.5704E-05	-0.24967	-0.00010466	419.210287695985	17.916	0.14667	17.916	17.823	17.969	0					6	3	2	0	0	0	0.59773	1	4556	4556		49.442	7.0454	1	228600	+		36209	17984	24767	24857	36654	36654					-0.01854409796726486
SGLTVPTSPK	10	Unmodified	_SGLTVPTSPK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7796630859375	2	493.779482	985.544411	-0.47718	-0.00023562	0.20198	9.9732E-05	-0.2752	-0.00013589	493.77961926399433	28.187	0.73261	28.187	27.953	28.686	0					46	18	3	0	0	0	0.27065	1	9892	9892		70.816	7.2824	1	1092200			36210	4928	24768	24858	36655	36655					0.051060367233731085
SGLTVPTSPK	10	Unmodified	_SGLTVPTSPK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.77972412109375	2	493.779482	985.544411	-0.74915	-0.00036992	0.71439	0.00035275	-0.034766	-1.7167E-05	493.77991127605657	28.185	0.43344	28.185	27.931	28.365	0					22	9	3	0	0	0	0.36647	1	10256	10256		59.931	3.497	1	323320			36211	4928	24768	24858	36656	36656					0.051060367233731085
SGLYGVITAV	10	Unmodified	_SGLYGVITAV_					0	0	0			REV__RGS12|p.M230T|1|0.38|ENSG00000159788|chr4:3316859-3316859|T/C|missense_variant	REV__RGS12|p.M230T|1|0.38|ENSG00000159788|chr4:3316859-3316859|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2763977050781	2	490.276575	978.538597	-0.4786	-0.00023464	-0.23635	-0.00011588	-0.71495	-0.00035052	490.2765259159493	35.66	0.34452	35.66	35.558	35.903	0					20	9	3	0	0	0	0.26198	1	13382	13382		71.877	13.648	1	895590	+		36212	21460	24769	24859	36657	36657					0.04846938211687757
SGMDVTIVK	9	Unmodified	_SGMDVTIVK_					0	0	0		ENSG00000006530|ENST00000649286|AGK;ENST00000465241.5_1_7:141255266-141315366:+|nuORF	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2550964355469	2	475.254785	948.495018	0.96002	0.00045626	-0.35861	-0.00017043	0.60141	0.00028582	475.2545324966208	31.874	0.2158	31.874	31.8	32.015	0					11	8	2	0	0	0	0.054723	1	10256	10256		93.598	16.28	1	105780			36213	979	24770	24860	36658	36658					0.018710054429334377
SGMDVTIVK	9	Unmodified	_SGMDVTIVK_					0	0	0		ENSG00000006530|ENST00000649286|AGK;ENST00000465241.5_1_7:141255266-141315366:+|nuORF	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.25469970703125	2	475.254785	948.495018	0.63199	0.00030036	-1.0606	-0.00050404	-0.42859	-0.00020369	475.25445184787947	32.159	0.29966	32.159	32.031	32.331	0					17	7	4	0	0	0	0.02429	1	11789	11789		114.89	10.148	1	762770			36214	979	24770	24860	36659	36659					0.018710054429334377
SGMDVTIVK	9	Unmodified	_SGMDVTIVK_					0	0	0		ENSG00000006530|ENST00000649286|AGK;ENST00000465241.5_1_7:141255266-141315366:+|nuORF	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.255126953125	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.222	1	32.222	31.722	32.722	0								0	0	0	0.23111	1	12226	12226		46.457	10.838	1				36215	979	24770	24860	36660	36660					0.018710054429334377
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.20703125	2	427.207835	852.401117	-0.23008	-9.8294E-05	-0.7614	-0.00032528	-0.99149	-0.00042357	427.2076399405473	16.408	0.13696	16.408	16.339	16.476	0					11	5	3	0	0	0	0.14578	1	3711	3711		68.846	13.342	1	455720			36216	3782	24771	24861	36661	36661					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.2076721191406	2	427.207835	852.401117	0.87221	0.00037262	-1.496	-0.00063911	-0.6238	-0.00026649	427.20733097751827	16.67	0.33658	16.67	16.576	16.913	0					14	8	3	0	0	0	0.019258	1	4572	4572		123.21	6.3045	1	1399800			36217	3782	24771	24861	36662	36662					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.2076110839844	2	427.207835	852.401117	-0.67149	-0.00028687	0.081012	3.4609E-05	-0.59048	-0.00025226	427.2078185946274	16.671	0.25064	16.671	16.608	16.858	0					15	6	3	0	0	0	0.029571	1	4565	4565		109.44	4.6923	1	1142300			36218	3782	24771	24861	36663	36663					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.2075500488281	2	427.207835	852.401117	-0.99665	-0.00042578	0.20838	8.9021E-05	-0.78827	-0.00033675	427.2080246454842	16.401	0.19341	16.401	16.327	16.52	0					14	6	3	0	0	0	0.040209	1	3916	3916		99.013	0.38357	1	880900			36219	3782	24771	24861	36664	36664					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.2074890136719	2	427.207835	852.401117	0.92513	0.00039522	-1.9457	-0.00083122	-1.0206	-0.00043599	427.2071636541459	16.621	0.16555	16.621	16.515	16.68	0					10	3	4	0	0	0	0.021015	1	4795	4795		120.31	3.4024	1	5202700			36220	3782	24771	24861	36665	36665					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.2080078125	2	427.207835	852.401117	-0.14066	-6.0093E-05	-0.40589	-0.0001734	-0.54655	-0.00023349	427.2076865547252	16.443	0.18833	16.443	16.377	16.566	0					13	5	3	0	0	0	0.067603	1	3893	3893		89.029	17.151	1	292440			36221	3782	24771	24861	36666	36666					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.2074279785156	2	427.207835	852.401117	-2.7427	-0.0011717	1.9991	0.00085403	-0.74364	-0.00031769	427.2088024507286	16.439	0.27305	16.439	16.322	16.595	0					14	7	3	0	0	0	0.061298	1	3885	3885		91.265	3.5688	1	633100			36222	3782	24771	24861	36667	36667					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.2076721191406	2	427.207835	852.401117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.621	1	16.621	16.121	17.121	0								0	0	0	0.00033844	1	4637	4637		131.62	1.9336	1				36223	3782	24771	24861	36668	36668					-0.03098713659369423
SGMGSTVSK	9	Unmodified	_SGMGSTVSK_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.20758056640625	2	427.207835	852.401117	2.4527	0.0010478	-3.3472	-0.00143	-0.8945	-0.00038214	427.2065368157654	16.625	0.26485	16.625	16.515	16.78	0					13	5	3	0	0	0	0.029571	1	4649	4649		109.44	16.243	1	4495700			36224	3782	24771	24861	36669	36669					-0.03098713659369423
SGMKHQQQQ	9	Unmodified	_SGMKHQQQQ_					0	0	0		BPIFA3|p.R84M|1|0.37|ENSG00000131059|chr20:33223934-33223934|G/T|missense_variant	BPIFA3|p.R84M|1|0.37|ENSG00000131059|chr20:33223934-33223934|G/T|missense_variant	BPIFA3|p.R84M|1|0.37|ENSG00000131059|chr20:33223934-33223934|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.2546997070312	2	536.25364	1070.49273	0.19387	0.00010396	2.3315	0.0012503	2.5254	0.0013542	536.2546365055103	12.755	0.086482	12.755	12.711	12.797	0					4	2	2	0	0	0	0.41113	1	2756	2756		40.778	1.972	1	535150			36225	312	24772	24862	36670	36670					-0.039700302421806555
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	411.8624572753906	3	411.862002	1232.56418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.246	1	22.246	21.746	22.746	0								0	0	0	0.40723	1	6259	6259		35.496	10.37	1			+	36226	11643	24773	24863	36671	36671					-0.042802785998219406
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.86199951171875	3	411.862002	1232.56418	1.0143	0.00041774	-1.009	-0.00041556	0.0053043	2.1847E-06	411.8616434929207	22.523	0.26758	22.523	22.43	22.698	0					9	6	2	0	0	0	0.22967	1	7341	7341		70.728	29.648	1	655390		+	36227	11643	24773	24863	36672	36672					-0.042802785998219406
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.8619384765625	3	411.862002	1232.56418	1.0149	0.00041798	-1.3752	-0.00056639	-0.36033	-0.00014841	411.8615397339188	22.933	0.29901	22.933	22.846	23.145	0					12	7	3	0	0	0	0.24228	1	7534	7534		69.216	35.129	1	267080		+	36228	11643	24773	24863	36673	36673					-0.042802785998219406
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	617.2898559570312	2	617.289365	1232.56418	-0.39324	-0.00024275	0.63196	0.0003901	0.23871	0.00014735	617.2900359022645	22.51	0.18919	22.51	22.414	22.604	0					9	4	3	0	0	0	0.031856	1	7333	7333		126.03	43.785	1	558630		+	36229	11643	24773	24863	36674	36674					-0.042802785998219406
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	411.8620300292969	3	411.862002	1232.56418	-1.4382	-0.00059236	0.74512	0.00030689	-0.69312	-0.00028547	411.86227991607393	22.25	0.10078	22.25	22.168	22.269	0					6	3	2	0	0	0	0.38582	1	6519	6519		53.013	20.262	1	51439		+	36230	11643	24773	24863	36675	36675					-0.042802785998219406
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	411.8618469238281	3	411.862002	1232.56418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.687	1	22.687	22.187	23.187	0								0	0	0	0.45674	1	6718	6718		24.276	5.1724	1			+	36231	11643	24773	24863	36676	36676					-0.042802785998219406
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.86199951171875	3	411.862002	1232.56418	1.0807	0.0004451	-1.6276	-0.00067036	-0.54692	-0.00022526	411.86156565853076	22.409	0.16629	22.409	22.302	22.468	0					10	3	4	0	0	0	0.041277	1	7593	7593		109.39	37.146	1	747430		+	36232	11643	24773	24863	36677	36677					-0.042802785998219406
SGMQNMSIHTK	11	Unmodified	_SGMQNMSIHTK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.8619384765625	3	411.862002	1232.56418	0.89626	0.00036913	-1.4423	-0.00059402	-0.54602	-0.00022489	411.861614195536	22.43	0.16864	22.43	22.321	22.489	0					9	3	3	0	0	0	0.27262	1	7470	7470		65.695	24.615	1	1401300		+	36233	11643	24773	24863	36678	36678					-0.042802785998219406
SGNANMVNK	9	Unmodified	_SGNANMVNK_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.72576904296875	2	467.724184	933.433814	0.34503	0.00016138	4.261	0.001993	4.606	0.0021543	467.72604264164835	15.778	0.29154	15.778	15.533	15.824	0					13	7	2	0	0	0	0.27249	1	4144	4144		52.937	13.684	1	227740			36234	7015	24774	24864	36679	36679					-0.03556506536494908
SGNDKPLSK	9	Unmodified	_SGNDKPLSK_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.25408935546875	2	473.253631	944.49271	0.67321	0.0003186	0.12452	5.8927E-05	0.79773	0.00037753	473.2536890358244	13.436	0.1604	13.436	13.351	13.511	0					6	4	2	0	0	0	0.061298	1	3067	3067		91.265	31.147	1	85329			36235	896	24775	24865	36680	36680					0.01824293029483215
SGNDKPLSK	9	Unmodified	_SGNDKPLSK_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2535400390625	2	473.253631	944.49271	-0.12204	-5.7756E-05	0.55278	0.0002616	0.43074	0.00020385	473.25395388632313	13.438	0.22604	13.438	13.348	13.574	0					11	5	3	0	0	0	0.019258	1	3263	3263		123.21	21.955	1	179920			36236	896	24775	24865	36681	36681					0.01824293029483215
SGPAGREK	8	Unmodified	_SGPAGREK_					0	0	0		KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-6|KLF4;nc|ENSG00000136826|O43474-5|KLF4	KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant	KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.21417236328125	2	401.214309	800.414065	0.85451	0.00034284	-0.76154	-0.00030554	0.092966	3.7299E-05	401.21398599245964	11.47	0.18134	11.47	11.336	11.517	0					7	5	2	0	0	0	0.34592	1	2345	2345		77.318	0.54344	1	97474			36237	4113	24776	24866	36682	36682					0.00587485515040953
SGPGENRSM	9	Unmodified	_SGPGENRSM_					0	0	0		ENST00000479135.5_1_22:29673993-29684776:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;EWSR1|p.P622Lfs*4|1|0.39|ENSG00000182944|chr22:29299775-29299775|G/-|frameshift_variant;EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant;EWSR1|p.M605Tfs*41|1|0.09|ENSG00000182944|chr22:29299733-29299734|-/CCTC|frameshift_variant;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.70513916015625	2	467.705991	933.397429	-2.1891	-0.0010238	1.1153	0.00052164	-1.0738	-0.0005022	467.7063107241601	16.843	0.12369	16.843	16.762	16.885	0					5	3	2	0	0	0	0.41958	1	4087	4087		40.058	13.365	1	45059			36238	6928	24777	24867	36683	36683					-0.07193383433207146
SGPPGHTMEV	10	Unmodified	_SGPPGHTMEV_					0	0	0		ENST00000555650.5_1_14:21485757-21486740:-|nuORF;ENST00000556716.5_1_14:21485757-21486740:-|nuORF;nc|ENSG00000165795|Q9UN36-4|NDRG2;nc|ENSG00000165795|Q9UN36-5|NDRG2;nc|ENSG00000165795|Q9UN36-2|NDRG2;nc|ENSG00000165795|Q9UN36-3|NDRG2;nc|ENSG00000165795|Q9UN36-6|NDRG2;ENSG00000165795|ENST00000556147|NDRG2	ENST00000555650.5_1_14:21485757-21486740:-|nuORF	ENST00000555650.5_1_14:21485757-21486740:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.2319030761719	2	506.231842	1010.44913	-0.71595	-0.00036244	0.57609	0.00029163	-0.13986	-7.0801E-05	506.2321008334439	25.146	0.5428	25.146	24.995	25.538	0					30	18	2	0	0	0	0.47859	1	7813	7813		47.657	12.039	1	84387			36239	5829	24778	24868	36684	36684					-0.055676397393199295
SGPQNASSL	9	Unmodified	_SGPQNASSL_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7087097167969	2	430.709057	859.40356	0.17219	7.4166E-05	-0.59248	-0.00025519	-0.42029	-0.00018102	430.708676961345	24.62	0.25563	24.62	24.474	24.729	0					10	7	2	0	0	0	0.13726	1	7303	7303		70.816	2.0294	1	88820			36240	5038	24779	24869	36685	36685					-0.031765419300541
SGPQNASSL	9	Unmodified	_SGPQNASSL_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.70892333984375	2	430.709057	859.40356	-0.8573	-0.00036925	0.348	0.00014989	-0.5093	-0.00021936	430.70918382522143	24.628	0.26459	24.628	24.498	24.763	0					14	9	2	0	0	0	0.078509	1	7567	7567		85.161	5.4482	1	73855			36241	5038	24779	24869	36686	36686					-0.031765419300541
SGPQNASSL	9	Unmodified	_SGPQNASSL_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7087707519531	2	430.709057	859.40356	-0.34482	-0.00014852	-0.20111	-8.6622E-05	-0.54594	-0.00023514	430.7089804591894	24.711	0.32825	24.711	24.547	24.876	0					13	7	3	0	0	0	0.13726	1	7750	7750		70.816	16.04	1	87702			36242	5038	24779	24869	36687	36687					-0.031765419300541
SGPSKWNWL	9	Unmodified	_SGPSKWNWL_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.84906005859375	3	358.85042	1073.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.512	1	13.512	13.012	14.012	0								0	0	0	0.37517	1	3153	3153		18.262	1.5447	1				36243	7543	24780	24870	36688	36688					-0.0043941035396528605
SGPTARAL	8	Unmodified	_SGPTARAL_					0	0	0		ENSG00000198488|ENST00000622824|B3GNT6;nc|ENSG00000198488|Q6ZMB0-3|B3GNT6	ENSG00000198488|ENST00000622824|B3GNT6	ENSG00000198488|ENST00000622824|B3GNT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	386.7192077636719	2	386.719227	771.423902	-0.019141	-7.4022E-06	-0.072383	-2.7992E-05	-0.091524	-3.5394E-05	386.71914624249973	21.17	0.1216	21.17	21.087	21.209	0					6	3	2	0	0	0	0.78978	1	5793	5793		21.96	3.6355	1	108560			36244	7566	24781	24871	36689	36689					0.029046735204133256
SGPTARAL	8	Unmodified	_SGPTARAL_					0	0	0		ENSG00000198488|ENST00000622824|B3GNT6;nc|ENSG00000198488|Q6ZMB0-3|B3GNT6	ENSG00000198488|ENST00000622824|B3GNT6	ENSG00000198488|ENST00000622824|B3GNT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.7193908691406	2	386.719227	771.423902	-0.0080338	-3.1068E-06	-0.083861	-3.2431E-05	-0.091895	-3.5538E-05	386.71933679237685	21.52	0.19002	21.52	21.42	21.61	0					10	4	3	0	0	0	0.5535	1	6858	6858		54.776	12.38	1	561810			36245	7566	24781	24871	36690	36690					0.029046735204133256
SGPTKAPVGP	10	Unmodified	_SGPTKAPVGP_					0	0	0			REV__nc|ENSG00000168229|Q13258-2|PTGDR	REV__nc|ENSG00000168229|Q13258-2|PTGDR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.753173828125	2	455.753267	909.491981	0.024977	1.1384E-05	-0.81316	-0.0003706	-0.78818	-0.00035922	455.752962086331	29.259	0.24338	29.259	29.125	29.369	0					14	9	2	0	0	0	0.41335	1	9217	9217		54.776	3.4409	1	79175	+		36246	21110	24782	24872	36691	36691					0.03361498380422745
SGQGFTNF	8	Unmodified	_SGQGFTNF_					0	0	0		chr1:144208475-144245238|418|15.68|0.0|20.58|-|2|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|4;chr1:143382868-144245238|241|14.46|0.0|20.46|-|2|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|4	chr1:144208475-144245238|418|15.68|0.0|20.58|-|2|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|4	chr1:144208475-144245238|418|15.68|0.0|20.58|-|2|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.19232177734375	2	429.193042	856.371532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.204	1	50.204	49.704	50.704	0								0	0	0	1.7419	1	19829	19829		23.042	1.0826	1				36247	513	24783	24873	36692	36692					-0.06239909613202599
SGQRKQNTA	9	Unmodified	_SGQRKQNTA_					0	0	0		ENST00000374212.4_1_9:116024667-116024982:+|nuORF	ENST00000374212.4_1_9:116024667-116024982:+|nuORF	ENST00000374212.4_1_9:116024667-116024982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7624816894531	2	495.259779	988.505006	3.4237	0.0016956	-0.06761	-3.3484E-05	3.3561	0.0016621	495.2597998083893	31.355	0.21131	31.355	31.231	31.443	0					11	8	2	0	0	0	0.59802	1	10364	10364		21.96	0	1	147470			36248	9007	24784	24874	36693	36693					0.010293294925077134
SGQSALYD	8	Unmodified	_SGQSALYD_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;RANBP2|p.L389_F390insKKKFKL|1|0.03|ENSG00000153201|chr2:108749023-108749024|-/AAAAAAAAATTTAAGTTA|inframe_insertion	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.6900329589844	2	420.690333	839.366112	-0.038189	-1.6066E-05	-0.49671	-0.00020896	-0.5349	-0.00022503	420.6900721143194	23.518	0.31754	23.518	23.297	23.614	0					15	7	3	0	0	0	0.73426	1	7167	7167		29.15	6.1071	1	364190			36249	5044	24785	24875	36694	36694					-0.0599963319566541
SGREIAFPIE	10	Unmodified	_SGREIAFPIE_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.7969360351562	2	559.795663	1117.57677	1.284	0.00071876	-0.022688	-1.2701E-05	1.2613	0.00070606	559.795666418781	34.83	0.23024	34.83	34.739	34.969	0					21	10	3	0	0	0	0.67098	1	11384	11384		25.574	25.574	1	176240			36250	985	24786	24876	36695	36695					0.022688241263495
SGREVKRLV	9	Unmodified	_SGREVKRLV_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.82080078125	2	522.31964	1042.62473	-0.078826	-4.1173E-05	-3.9726	-0.002075	-4.0515	-0.0021162	522.3165850280241	32.773	0.29596	32.773	32.666	32.962	0					12	7	2	0	0	0	0.41113	1	12538	12538		40.778	0	1	74482	+		36251	13167	24787	24877	36696	36696					0.1051194283706991
SGRLMPDPK	9	Unmodified	_SGRLMPDPK_					0	0	0		NAGA|p.P198Qfs*3|1|0.46|ENSG00000198951|chr22:42066714-42066714|G/-|frameshift_variant;ENSG00000198951|ENST00000396398|NAGA	NAGA|p.P198Qfs*3|1|0.46|ENSG00000198951|chr22:42066714-42066714|G/-|frameshift_variant	NAGA|p.P198Qfs*3|1|0.46|ENSG00000198951|chr22:42066714-42066714|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.1795959472656	3	334.17966	999.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.625	1	14.625	14.125	15.125	0								0	0	0	0.2591	1	3680	3680		49.536	10.73	1				36252	7645	24788	24878	36697	36697					0.01737229911339
SGRTMSTK	8	Unmodified	_SGRTMSTK_					0	0	0			REV__ENST00000592828.5_1_19:11687597-11687906:-|nuORF	REV__ENST00000592828.5_1_19:11687597-11687906:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.22149658203125	2	434.221277	866.428001	-0.26605	-0.00011553	0.39214	0.00017028	0.12609	5.475E-05	434.22137352238053	24.253	0.15672	24.253	24.187	24.343	0					9	5	2	0	0	0	0.72381	1	7123	7123		30.504	30.504	1	121210	+		36253	20542	24789	24879	36698	36698					-0.010556050481682178
SGRTMSTK	8	Unmodified	_SGRTMSTK_					0	0	0			REV__ENST00000592828.5_1_19:11687597-11687906:-|nuORF	REV__ENST00000592828.5_1_19:11687597-11687906:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2215270996094	2	434.221277	866.428001	-0.43947	-0.00019083	0.53353	0.00023167	0.094063	4.0844E-05	434.22164177859975	24.492	0.22692	24.492	24.388	24.615	0					18	5	5	0	0	0	0.58597	1	8276	8276		51.335	51.335	1	691390	+		36254	20542	24789	24879	36699	36699					-0.010556050481682178
SGRTMSTK	8	Unmodified	_SGRTMSTK_					0	0	0			REV__ENST00000592828.5_1_19:11687597-11687906:-|nuORF	REV__ENST00000592828.5_1_19:11687597-11687906:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.221435546875	2	434.221277	866.428001	0.35682	0.00015494	0.11538	5.0101E-05	0.4722	0.00020504	434.2213243241005	24.485	0.21632	24.485	24.377	24.593	0					7	4	2	0	0	0	0.58597	1	8590	8590		51.335	8.861	1	345960	+		36255	20542	24789	24879	36700	36700					-0.010556050481682178
SGRWRRRSG	9	Unmodified	_SGRWRRRSG_					0	0	0		ENST00000435409.6_2_1:153700651-153701247:+|nuORF;ENST00000318967.6_2_1:153700611-153701247:+|nuORF	ENST00000435409.6_2_1:153700651-153701247:+|nuORF	ENST00000435409.6_2_1:153700651-153701247:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2101135253906	3	373.207712	1116.60131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.75	1	54.75	54.25	55.25	0								0	0	0	0.3368	1	20847	20847		21.686	0	1				36256	8602	24790	24880	36701	36701					0.04766941843104178
SGSATIYGHDI	11	Unmodified	_SGSATIYGHDI_					0	0	0		ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ABCA2|p.G2110Afs*11|1|0.41|ENSG00000107331|chr9:137010217-137010217|C/-|frameshift_variant;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7669677734375	2	560.767103	1119.51965	-0.88963	-0.00049888	-0.77312	-0.00043354	-1.6628	-0.00093242	560.7667336966902	26.78	0.86958	26.78	26.625	27.494	0					61	21	4	0	0	0	0.58789	1	8802	8802		37.812	2.6595	1	1925900			36257	5	24791	24881	36702	36702					-0.03532643149992509
SGSFIFLVL	9	Unmodified	_SGSFIFLVL_					0	0	0			REV__OR5K2|p.F257Sfs*24|1|0.43|ENSG00000231861|chr3:98498444-98498444|T/-|frameshift_variant	REV__OR5K2|p.F257Sfs*24|1|0.43|ENSG00000231861|chr3:98498444-98498444|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.78179931640625	2	491.784036	981.553519	-1.3979	-0.00068746	-2.0161	-0.0009915	-3.414	-0.001679	491.7827001764078	35.307	0.12205	35.307	35.228	35.35	0					7	5	2	0	0	0	0.5879	1	11944	11944		23.042	2.5607	1	41574	+		36258	17645	24792	24882	36703	36703					0.062004300797070755
SGSFPLVLK	9	Unmodified	_SGSFPLVLK_					0	0	0		ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2813415527344	2	474.28166	946.548768	-0.59601	-0.00028268	-0.05704	-2.7053E-05	-0.65305	-0.00030973	474.2816868546542	41.334	0.46329	41.334	41.159	41.622	0					19	11	2	0	0	0	0.098791	1	16425	16425		79.713	2.9384	1	148130			36259	5963	24793	24883	36704	36704					0.07335545936950894
SGSGESSGIT	10	Unmodified	_SGSGESSGIT_					0	0	0		ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant;nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant	ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.1968688964844	2	441.195979	880.377405	0.29669	0.0001309	1.7418	0.00076846	2.0384	0.00089935	441.1969217481641	15.782	0.13155	15.782	15.71	15.842	0					8	5	2	0	0	0	0.54197	1	3490	3490		40.778	3.6191	1	63907			36260	32	24794	24884	36705	36705					-0.06756855892172098
SGSISDGLK	9	Unmodified	_SGSISDGLK_					0	0	0			REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.2271423339844	2	432.227082	862.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.317	1	17.317	16.817	17.817	0								0	0	0	0.3119	1	4292	4292		32.812	1.2826	1		+		36261	18778	24795	24885	36706	36706					0.002889152468242173
SGSLSGGSVI	10	Unmodified	_SGSLSGGSVI_					0	0	0		DGKD|p.P733S|1|0.13|ENSG00000077044|chr2:233451993-233451993|C/T|missense_variant	DGKD|p.P733S|1|0.13|ENSG00000077044|chr2:233451993-233451993|C/T|missense_variant	DGKD|p.P733S|1|0.13|ENSG00000077044|chr2:233451993-233451993|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.22723388671875	2	432.227082	862.439611	0.17762	7.6772E-05	0.074981	3.2409E-05	0.2526	0.00010918	432.2272523230134	17.206	0.16673	17.206	17.142	17.308	0					7	5	2	0	0	0	0.54197	1	4069	4069		40.778	1.5253	1	60765			36262	775	24796	24886	36707	36707					0.0028891524681284864
SGSNPLLKT	9	Unmodified	_SGSNPLLKT_					0	0	0			REV__ENST00000483926.5_1_1:27668800-27676624:+|nuORF	REV__ENST00000483926.5_1_1:27668800-27676624:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.75830078125	2	458.758549	915.502546	-0.95892	-0.00043991	0.36669	0.00016822	-0.59223	-0.00027169	458.7587125032735	27.905	0.46741	27.905	27.585	28.052	0					40	16	3	0	0	0	0.3269	1	8877	8877		47.96	12.341	1	779590	+		36263	19629	24797	24887	36708	36708					0.04141481034866956
SGSPSPSAVK	10	Unmodified	_SGSPSPSAVK_					0	0	0			REV__ENSG00000160194|ENST00000354250|NDUFV3	REV__ENSG00000160194|ENST00000354250|NDUFV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.74005126953125	2	458.740357	915.46616	0.88025	0.00040381	-1.9215	-0.00088145	-1.0412	-0.00047764	458.73939194625245	27.897	0.26387	27.897	27.746	28.01	0					15	5	3	0	0	0	0.38194	1	10055	10055		58.23	5.2932	1	683990	+		36264	15739	24798	24888	36709	36709					0.005046041381433497
SGSSPLPRF	9	Unmodified	_SGSSPLPRF_					0	0	0			REV__ENST00000453096.6_1_11:18344163-18344274:+|nuORF	REV__ENST00000453096.6_1_11:18344163-18344274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.25054931640625	2	474.250892	946.48723	0.69593	0.00033004	-0.93224	-0.00044212	-0.23631	-0.00011207	474.2503908867686	33.291	0.3172	33.291	33.183	33.5	0					12	6	3	0	0	0	0.54267	1	12656	12656		27.882	1.1893	1	294480	+		36265	19326	24799	24889	36710	36710					0.011846142376612079
SGSTEWRPTT	10	Unmodified	_SGSTEWRPTT_					0	0	0			REV__ENST00000485344.6_1_2:240900539-240929534:-|nuORF	REV__ENST00000485344.6_1_2:240900539-240929534:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7817993164062	2	561.264727	1120.5149	-0.010891	-6.1128E-06	-4.0811	-0.0022906	-4.092	-0.0022967	561.2622716394071	15.558	0.1157	15.558	15.451	15.567	0					4	2	2	0	0	0	0.67098	1	4243	4243		25.574	0	1	144650	+		36266	19652	24800	24890	36711	36711					-0.040535272927627375
SGSTIAILK	9	Unmodified	_SGSTIAILK_					0	0	0		GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant;GUCY2C|p.R974I|1|0.31|ENSG00000070019|chr12:14616682-14616682|C/A|missense_variant;ENSG00000070019|ENST00000261170|GUCY2C	GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant	GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.27099609375	2	445.271293	888.528032	-0.18601	-8.2824E-05	-0.39762	-0.00017705	-0.58363	-0.00025987	445.2710897948985	31.837	0.16431	31.837	31.764	31.928	0					8	3	3	0	0	0	0.22837	1	12045	12045		58.23	12.258	1	103340			36267	11176	24801	24891	36712	36712					0.07930955557287689
SGSTILALK	9	Unmodified	_SGSTILALK_					0	0	0		ENSG00000145861|ENST00000652664|C1QTNF2	ENSG00000145861|ENST00000652664|C1QTNF2	ENSG00000145861|ENST00000652664|C1QTNF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2713317871094	2	445.271293	888.528032	-0.46283	-0.00020608	0.33747	0.00015027	-0.12536	-5.5819E-05	445.2715073284229	31.826	0.21714	31.826	31.718	31.935	0					6	4	2	0	0	0	0.28897	1	11953	11953		51.193	0	1	122790			36268	4697	24802	24892	36713	36713					0.07930955557287689
SGSTVKEK	8	Unmodified	_SGSTVKEK_					0	0	0			REV__ENSG00000171560|ENST00000403106|FGA	REV__ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	418.22894287109375	2	418.229625	834.444697	3.403	0.0014233	-4.3727	-0.0018288	-0.96962	-0.00040552	418.2276558959718	17.641	0.13649	17.641	17.578	17.715	0					6	4	2	0	0	0	0.71588	1	4484	4484		31.53	8.4873	1	75985	+		36269	16420	24803	24893	36714	36714					0.020852191094377304
SGTALTLIL	9	Unmodified	_SGTALTLIL_					0	0	0		ENST00000529980.5_1_11:47159254-47177376:+|nuORF	ENST00000529980.5_1_11:47159254-47177376:+|nuORF	ENST00000529980.5_1_11:47159254-47177376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7734375	2	444.773668	887.532783	0.55115	0.00024514	-0.92851	-0.00041298	-0.37736	-0.00016784	444.77321311120124	48.926	0.25263	48.926	48.818	49.071	0					27	15	2	0	0	0	0.14734	1	18442	18442		68.485	0	1	182340			36270	10420	24804	24894	36715	36715					0.08451839700046548
SGTHWRVLG	9	Unmodified	_SGTHWRVLG_					0	0	0		ENST00000528435.5_1_11:118175667-118182938:+|nuORF;ENST00000529713.5_1_11:118175667-118183649:+|nuORF;ENSG00000198851|ENST00000361763|CD3E	ENST00000528435.5_1_11:118175667-118182938:+|nuORF	ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.1820068359375	3	338.182281	1011.52501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.599	1	18.599	18.099	19.099	0								0	0	0	0.37146	1	5736	5736		19.997	0.89325	1				36271	7624	24805	24895	36716	36716					0.019711252231445542
SGTLTLKVL	9	Unmodified	_SGTLTLKVL_					0	0	0		ENST00000367142.4_1_1:205684786-205684864:-|nuORF	ENST00000367142.4_1_1:205684786-205684864:-|nuORF	ENST00000367142.4_1_1:205684786-205684864:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2718200683594	2	466.294768	930.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.196	1	36.196	35.696	36.696	0								0	0	0	0.3245	1	13632	13632		30.318	2.0634	1				36272	8908	24806	24896	36717	36717					0.10691815108430092
SGTPQGLLVY	10	Unmodified	_SGTPQGLLVY_					0	0	0		NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;NAALADL1|p.T687Rfs*4|1|0.25|ENSG00000168060|chr11:65045434-65045434|G/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7815551757812	2	517.779482	1033.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.969	1	40.969	40.469	41.469	0								0	0	0	0.33107	1	13175	13175		45.972	7.1661	1				36273	6052	24807	24897	36718	36718					0.028980367233771176
SGTQQPPQGSV	11	Unmodified	_SGTQQPPQGSV_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.5116271972656	3	362.512244	1084.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.448	1	13.448	12.948	13.948	0								0	0	0	0.43806	1	2639	2639		28.577	6.6168	1				36274	7674	24808	24898	36719	36719					-0.023975272927373226
SGTTIKTTTST	11	Unmodified	_SGTTIKTTTST_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.288818359375	2	549.287868	1096.56118	1.8359	0.0010085	-0.061705	-3.3894E-05	1.7742	0.00097456	549.2878127819075	19.335	0.46209	19.335	19.129	19.591	0					18	9	4	0	0	0	0.20372	1	5967	5967		56.434	0	1	4754700	+		36275	13070	24809	24899	36720	36720					0.016764928186603356
SGTTVIHL	8	Unmodified	_SGTTVIHL_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.23455810546875	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.572	1	31.572	31.072	32.072	0								0	0	0	1.7419	1	11508	11508		62.978	10.679	1				36276	7333	24810	24900	36721	36721					0.03469826834657397
SGTTVIHL	8	Unmodified	_SGTTVIHL_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2346496582031	2	414.23471	826.454868	0.06272	2.5981E-05	-0.32988	-0.00013665	-0.26716	-0.00011067	414.2345521937491	31.53	0.15125	31.53	31.438	31.589	0					6	3	2	0	0	0	0.54629	1	11908	11908		55.504	13.03	1	207510			36277	7333	24810	24900	36722	36722					0.03469826834657397
SGVESPAETPA	11	Unmodified	_SGVESPAETPA_					0	0	0			REV__ENST00000592618.5_1_19:1010351-1011343:-|nuORF	REV__ENST00000592618.5_1_19:1010351-1011343:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7435302734375	2	522.745836	1043.47712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.273	1	12.273	11.773	12.773	0								0	0	0	0.41918	1	2721	2721		32.812	2.4947	1		+		36278	16864	24811	24901	36723	36723					-0.04288038278218664
SGVKGYEEK	9	Unmodified	_SGVKGYEEK_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.25103759765625	2	498.753464	995.492375	0.26282	0.00013108	-0.97277	-0.00048517	-0.70995	-0.00035409	498.75330786366493	25.873	0.44511	25.873	25.675	26.12	0					29	11	4	0	0	0	0.21263	1	7790	7790		60.118	1.3363	1	2187900			36279	4570	24812	24902	36724	36724					-0.0055512669038080276
SGVLLRHAR	9	Unmodified	_SGVLLRHAR_					0	0	0			REV__ENST00000332810.3_1_15:89174144-89174384:+|nuORF	REV__ENST00000332810.3_1_15:89174144-89174384:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.874267578125	3	336.873559	1007.59885	1.5997	0.0005389	0.78589	0.00026474	2.3856	0.00080364	336.87378950351376	26.34	0.27135	26.34	26.282	26.553	0					14	5	4	0	0	0	0.50461	1	9307	9307		31.53	0	1	1072400	+		36280	18391	24813	24903	36725	36725					0.09535093385454729
SGVQKPSAL	9	Unmodified	_SGVQKPSAL_					0	0	0			REV__nc|ENSG00000135540|Q5SYE7|NHSL1	REV__nc|ENSG00000135540|Q5SYE7|NHSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7527770996094	2	443.753267	885.491981	-1.1593	-0.00051442	0.88323	0.00039194	-0.27603	-0.00012249	443.75355656367515	25.348	0.55187	25.348	24.904	25.456	0					23	18	2	0	0	0	0.17854	1	7853	7853		64.207	3.2353	1	320760	+		36281	21031	24814	24904	36726	36726					0.04465498380432109
SGVSKKGG	8	Unmodified	_SGVSKKGG_					0	0	0		ENST00000240185.7_1_1:11083899-11083992:+|nuORF	ENST00000240185.7_1_1:11083899-11083992:+|nuORF	ENST00000240185.7_1_1:11083899-11083992:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.2067565917969	2	360.205953	718.397353	1.4281	0.00051441	0.5785	0.00020838	2.0066	0.00072278	360.20608961160116	46.948	0.52269	46.948	46.698	47.221	0					53	29	2	0	0	0	0.78641	1	17928	17928		11.511	0.64546	1	552120			36282	8216	24815	24905	36727	36727					0.02688984629105562
SGVSLAALK	9	Unmodified	_SGVSLAALK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.25775146484375	2	423.258185	844.501818	1.2497	0.00052894	-1.5845	-0.00067066	-0.33484	-0.00014172	423.2574402059498	33.205	0.19259	33.205	33.138	33.331	0					11	8	2	0	0	0	0.016683	1	10775	10775		127.46	6.8407	1	72569			36283	7222;6080;3386	24816	24906	36728	36728					0.07334686385809164
SGVSLAALK	9	Unmodified	_SGVSLAALK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.2584533691406	2	423.258185	844.501818	0.35798	0.00015152	0.055223	2.3374E-05	0.4132	0.00017489	423.2581200961574	33.202	0.23998	33.202	33.109	33.349	0					26	10	3	0	0	0	0.02953	1	10761	10761		109.48	13.288	1	330210			36284	7222;6080;3386	24816	24906	36729	36729					0.07334686385809164
SGVSLAALK	9	Unmodified	_SGVSLAALK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2583923339844	2	423.258185	844.501818	0.36063	0.00015264	-0.65903	-0.00027894	-0.2984	-0.0001263	423.25784645216646	33.478	0.25851	33.478	33.39	33.649	0					14	6	3	0	0	0	0.0080613	1	12373	12373		145.16	11.343	1	626490			36285	7222;6080;3386	24816	24906	36730	36730					0.07334686385809164
SGVSLAALK	9	Unmodified	_SGVSLAALK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2583312988281	2	423.258185	844.501818	0.97767	0.00041381	-0.99704	-0.00042201	-0.019367	-8.1971E-06	423.2577395970029	33.461	0.41245	33.461	33.339	33.752	0					27	10	4	0	0	0	0.013878	1	12364	12364		132.76	15.854	1	3357300			36286	7222;6080;3386	24816	24906	36731	36731					0.07334686385809164
SGVSLAALK	9	Unmodified	_SGVSLAALK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2579345703125	2	423.258185	844.501818	-0.24691	-0.00010451	-0.057626	-2.4391E-05	-0.30453	-0.0001289	423.25812360270066	33.457	0.39297	33.457	33.309	33.702	0					25	9	4	0	0	0	0.0080613	1	12794	12794		145.16	22.98	1	3885700			36287	7222;6080;3386	24816	24906	36732	36732					0.07334686385809164
SGVSLAALK	9	Unmodified	_SGVSLAALK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.2584533691406	2	423.258185	844.501818	0.138	5.8408E-05	0.093833	3.9715E-05	0.23183	9.8124E-05	423.258104741319	33.239	0.24685	33.239	33.157	33.404	0					15	7	3	0	0	0	0.013878	1	11634	11634		132.76	12.137	1	369710			36288	7222;6080;3386	24816	24906	36733	36733					0.07334686385809164
SGVSLAALK	9	Unmodified	_SGVSLAALK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.2586364746094	2	423.258185	844.501818	-0.35188	-0.00014894	0.042495	1.7987E-05	-0.30938	-0.00013095	423.2582127577576	33.407	0.41611	33.407	33.3	33.716	0					22	8	3	0	0	0	0.070005	1	12681	12681		88.177	10.859	1	3849300			36289	7222;6080;3386	24816	24906	36734	36734					0.07334686385809164
SGVSLAALKK	10	Unmodified	_SGVSLAALKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.3052978515625	2	487.305667	972.596781	-0.0030571	-1.4897E-06	-0.42842	-0.00020877	-0.43148	-0.00021026	487.3053604502128	26.589	0.1357	26.589	26.522	26.658	0					6	4	2	0	0	0	0.57211	1	8103	8103		37.508	1.8899	1	111150			36290	7222;6080;3386	24817	24907	36735	36735					0.10938619856995047
SGVSLAALKK	10	Unmodified	_SGVSLAALKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.3053894042969	2	487.305667	972.596781	-0.33885	-0.00016512	-0.14309	-6.9728E-05	-0.48194	-0.00023485	487.30552191520695	26.844	0.18111	26.844	26.745	26.927	0					12	4	3	0	0	0	0.022799	1	9314	9314		123.21	21.607	1	838750			36291	7222;6080;3386	24817	24907	36736	36736					0.10938619856995047
SGVSLAALKK	10	Unmodified	_SGVSLAALKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.3050842285156	2	487.305667	972.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.876	1	26.876	26.376	27.376	0								0	0	0	0.012705	1	9671	9671		109.44	21.262	1				36292	7222;6080;3386	24817	24907	36737	36737					0.10938619856995047
SGVSLAALKK	10	Unmodified	_SGVSLAALKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.3057556152344	2	487.305667	972.596781	-2.9113	-0.0014187	2.6547	0.0012937	-0.25656	-0.00012502	487.30693285042713	26.65	0.10453	26.65	26.582	26.687	0					4	2	2	0	0	0	0.4758	1	8613	8613		47.96	6.5329	1	99455			36293	7222;6080;3386	24817	24907	36738	36738					0.10938619856995047
SGVSLSVPLK	10	Unmodified	_SGVSLSVPLK_					0	0	0			REV__LGALS16|p.K87Nfs*15|1|0.15|ENSG00000249861|chr19:39658627-39658630|AACC/-|frameshift_variant	REV__LGALS16|p.K87Nfs*15|1|0.15|ENSG00000249861|chr19:39658627-39658630|AACC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7963562011719	2	493.797675	985.580796	-0.049175	-2.4283E-05	-1.1661	-0.00057582	-1.2153	-0.0006001	493.79726669669265	34.484	0.41013	34.484	34.225	34.635	0					14	10	2	0	0	0	0.38194	1	13301	13301		58.23	0	1	50500	+		36294	13758	24818	24908	36739	36739					0.08742913620096715
SGVYKLPP	8	Unmodified	_SGVYKLPP_					0	0	0		ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7470703125	2	430.747453	859.480354	-0.49818	-0.00021459	-0.71218	-0.00030677	-1.2104	-0.00052136	430.74716589759834	28.67	0.26352	28.67	28.482	28.745	0					9	5	2	0	0	0	0.70055	1	10531	10531		33.516	0	1	56171			36295	6324	24819	24909	36740	36740					0.04499301357088825
SGYEVHHQK	9	Unmodified	_SGYEVHHQK_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.7632446289062	2	542.762155	1083.50976	1.1412	0.0006194	-0.037742	-2.0485E-05	1.1035	0.00059892	542.7619194771701	13.45	0.10284	13.45	13.393	13.496	0					7	5	2	0	0	0	0.07136	1	2636	2636		87.696	31.064	1	80514			36296	4487	24820	24910	36741	36741					-0.028657863647140402
SGYEVHHQK	9	Unmodified	_SGYEVHHQK_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7626342773438	2	542.762155	1083.50976	0.31997	0.00017367	0.77609	0.00042123	1.0961	0.0005949	542.7625335326318	13.702	0.24657	13.702	13.613	13.859	0					12	6	3	0	0	0	0.035062	1	3183	3183		104.06	35.27	1	1046000			36297	4487	24820	24910	36742	36742					-0.028657863647140402
SGYEVHHQK	9	Unmodified	_SGYEVHHQK_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.762451171875	2	542.762155	1083.50976	2.0418	0.0011082	-1.3899	-0.00075438	0.65196	0.00035386	542.7613559766443	13.696	0.15355	13.696	13.639	13.793	0					7	3	3	0	0	0	0.27249	1	3405	3405		52.937	11.51	1	549110			36298	4487	24820	24910	36743	36743					-0.028657863647140402
SGYEVHHQK	9	Unmodified	_SGYEVHHQK_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7634887695312	2	542.762155	1083.50976	-1.489	-0.00080816	3.1429	0.0017058	1.6539	0.00089768	542.7639567155805	13.486	0.066938	13.486	13.431	13.498	0					7	3	3	0	0	0	0.087861	1	2717	2717		82.241	28.889	1	57006			36299	4487	24820	24910	36744	36744					-0.028657863647140402
SHALLRRPN	9	Unmodified	_SHALLRRPN_					0	0	0			REV__ENST00000473013.1_1_17:18064529-18067169:+|nuORF	REV__ENST00000473013.1_1_17:18064529-18067169:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.3113403320312	2	532.309606	1062.60466	1.7376	0.00092492	1.1727	0.00062425	2.9103	0.0015492	532.3102700182225	38.329	0.24681	38.329	38.202	38.449	0					11	5	3	0	0	0	0.43426	1	15065	15065		38.806	38.806	1	217700	+		36300	19500	24821	24911	36745	36745					0.07586191897121353
SHDVPGSPT	9	Unmodified	_SHDVPGSPT_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.70916748046875	2	448.709057	895.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.211	1	19.211	18.711	19.711	0								0	0	0	0.35507	1	5172	5172		24.203	3.7209	1				36301	7822	24822	24912	36746	36746					-0.0483254193003404
SHELLCIQR	9	Unmodified	_SHELLCIQR_					0	0	0		ENST00000446553.2_1_12:6959577-6960430:-|nuORF;ENST00000545368.5_1_12:6958360-6960430:-|nuORF	ENST00000446553.2_1_12:6959577-6960430:-|nuORF	ENST00000446553.2_1_12:6959577-6960430:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7902221679688	2	549.789858	1097.56516	0.53224	0.00029262	-0.19551	-0.00010749	0.33674	0.00018513	549.7897726393788	11.574	0.16986	11.574	11.514	11.684	0					18	6	4	0	0	0	0.53083	1	2250	2250		29.15	4.9468	1	1173700			36302	9619	24823	24913	36747	36747					0.020283038313891666
SHETNTVLR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SHETNTVLR_					1	0	0		BPIFB4|p.T29M|1|0.09|ENSG00000186191|chr20:33081612-33081612|C/T|missense_variant;ENSG00000186191|ENST00000375483|BPIFB4	BPIFB4|p.T29M|1|0.09|ENSG00000186191|chr20:33081612-33081612|C/T|missense_variant	BPIFB4|p.T29M|1|0.09|ENSG00000186191|chr20:33081612-33081612|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7810668945312	2	549.780544	1097.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.765	1	14.765	14.265	15.265	0								0	0	0	0.073265	1	3900	3900		79.451	8.1553	1				36303	313	24824	24914	36748	36748					0.0016646546118863625
SHFGCTVGLK	10	Unmodified	_SHFGCTVGLK_					0	0	0		ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.767333984375	2	524.765852	1047.51715	3.4363	0.0018033	-0.94048	-0.00049353	2.4958	0.0013097	524.7652665366235	16.867	0.30692	16.867	16.666	16.973	0					12	6	3	0	0	0	0.39566	1	4770	4770		56.721	0	1	734980			36304	3065	24825	24915	36749	36749					-0.004707700886456223
SHGSLARSML	10	Oxidation (M)	_SHGSLARSM(Oxidation (M))L_		SHGSLARSM(1)L		SHGSLARSM(42)L	0	0	1			REV__ENST00000468969.6_1_9:130536689-130540970:-|nuORF	REV__ENST00000468969.6_1_9:130536689-130540970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8515319824219	3	358.850202	1073.52878	3.0906	0.0011091	0.44913	0.00016117	3.5397	0.0012702	358.85033889906157	29.625	0.36342	29.625	29.515	29.879	0					18	7	4	0	0	0	0.5276	1	10888	10888		42.338	11.769	1	951850	+		36305	18290	24826	24916	36750	36750		684			-0.0050457306531370705
SHGSYFSLR	9	Unmodified	_SHGSYFSLR_					0	0	0			REV__nc|ENSG00000141934|O43688-3|PLPP2	REV__nc|ENSG00000141934|O43688-3|PLPP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2589721679688	2	527.259248	1052.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.396	1	14.396	13.896	14.896	0								0	0	0	0.38123	1	3113	3113		16.473	0	1		+		36306	13135	24827	24917	36751	36751					-0.020208848764013965
SHHEAMRPNWG	11	Oxidation (M)	_SHHEAM(Oxidation (M))RPNWG_		SHHEAM(1)RPNWG		SHHEAM(65)RPNWG	0	0	1			REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	669.294921875	2	669.293827	1336.5731	0.27382	0.00018326	1.5798	0.0010574	1.8537	0.0012406	669.2949207198689	17.601	0.17351	17.601	17.533	17.706	0					9	4	3	0	0	0	0.27467	1	4429	4429		65.465	10.743	1	332230	+		36307	19845	24828	24918	36752	36752		725			-0.08172168919145406
SHHEAMRPNWG	11	Oxidation (M)	_SHHEAM(Oxidation (M))RPNWG_		SHHEAM(1)RPNWG		SHHEAM(71)RPNWG	0	0	1			REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	669.2951049804688	2	669.293827	1336.5731	2.5471	0.0017047	-0.62806	-0.00042035	1.919	0.0012844	669.2933761451055	17.759	0.46221	17.759	17.598	18.06	0					20	9	4	0	0	0	0.22894	1	5193	5193		70.816	70.816	1	1812700	+		36308	19845	24828	24918	36753	36753		725			-0.08172168919145406
SHIALGTLVT	10	Unmodified	_SHIALGTLVT_					0	0	0			REV__SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	REV__SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.295166015625	2	506.295299	1010.57605	-0.37563	-0.00019018	0.18961	9.6E-05	-0.18601	-9.4177E-05	506.2953995816859	30.621	0.61013	30.621	30.205	30.815	0					30	13	3	0	0	0	0.71484	1	11322	11322		19.997	1.7347	1	299400	+		36309	13834	24829	24919	36754	36754					0.07118029477362597
SHIHFPLA	8	Unmodified	_SHIHFPLA_					0	0	0		ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENST00000530835.1_1_11:90015825-90016947:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.25518798828125	2	461.250695	920.486836	0.78466	0.00036192	0.29818	0.00013754	1.0828	0.00049946	461.25107681893564	38.561	0.40505	38.561	38.359	38.764	0					27	15	3	0	0	0	0.68754	1	14599	14599		35.201	7.3185	1	611210			36310	10430	24830	24920	36755	36755					0.02341239308452714
SHIKMNKGL	9	Unmodified	_SHIKMNKGL_					0	0	0			REV__HERC5|p.L430*|1|0.4|ENSG00000138646|chr4:88470659-88470659|T/-|frameshift_variant	REV__HERC5|p.L430*|1|0.4|ENSG00000138646|chr4:88470659-88470659|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.1833190917969	3	343.195421	1026.56443	0.5233	0.0001796	-1.4413	-0.00049465	-0.91799	-0.00031505	343.19510935812485	25.347	0.46854	25.347	24.924	25.392	0					11	9	2	0	0	0	0.5741	1	8921	8921		24.519	0.99649	1	90527	+		36311	14989	24831	24921	36756	36756					0.05221509182342743
SHKIRAGG	8	Unmodified	_SHKIRAGG_					0	0	0		ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2381591796875	2	413.238119	824.461684	1.0248	0.00042347	-0.29529	-0.00012203	0.72947	0.00030145	413.2379208148426	45.019	1.0978	45.019	44.671	45.769	0					122	65	2	0	0	0	0.8006	1	16741	16741		20.482	1.1219	1	251160			36312	6331	24832	24922	36757	36757					0.04243184505901354
SHLAEAFAK	9	Unmodified	_SHLAEAFAK_					0	0	0		nc|ENSG00000166405|Q7Z5B4-2|RIC3;ENST00000529035.1_1_11:8157336-8161717:-|nuORF;nc|ENSG00000166405|Q7Z5B4-6|RIC3;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3	nc|ENSG00000166405|Q7Z5B4-2|RIC3	nc|ENSG00000166405|Q7Z5B4-2|RIC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2581481933594	2	487.258717	972.50288	-1.2444	-0.00060635	0.93848	0.00045728	-0.30593	-0.00014907	487.2589809616952	34.328	0.20929	34.328	34.245	34.455	0					17	9	3	0	0	0	0.41113	1	11560	11560		40.778	5.1599	1	116640			36313	5896	24833	24923	36758	36758					0.015529007547115725
SHLEKEPL	8	Unmodified	_SHLEKEPL_					0	0	0		ENSG00000154079|ENST00000370474|SDHAF4	ENSG00000154079|ENST00000370474|SDHAF4	ENSG00000154079|ENST00000370474|SDHAF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7596435546875	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.844	1	37.844	37.344	38.344	0								0	0	0	1.7419	1	14373	14373		40.778	3.6191	1				36314	5073	24834	24924	36759	36759					0.024854810348415413
SHLPAPVM	8	Unmodified	_SHLPAPVM_					0	0	0			REV__PPFIA1|p.P16Lfs*24|1|0.32|ENSG00000131626|chr11:70272214-70272214|C/-|frameshift_variant	REV__PPFIA1|p.P16Lfs*24|1|0.32|ENSG00000131626|chr11:70272214-70272214|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.22589111328125	2	426.225831	850.437109	-0.70725	-0.00030145	-0.96178	-0.00040993	-1.669	-0.00071138	426.22602047279366	29.174	0.40744	29.174	28.957	29.364	0					30	10	4	0	0	0	0.6282	1	10359	10359		44.531	2.0566	1	466560	+		36315	21405	24835	24925	36760	36760					0.005907883081590626
SHLRGNDSAD	10	Unmodified	_SHLRGNDSAD_					0	0	0		nc|ENSG00000135127|Q6ZP65-2|BICDL1;ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1	nc|ENSG00000135127|Q6ZP65-2|BICDL1	nc|ENSG00000135127|Q6ZP65-2|BICDL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.2468872070312	2	536.244326	1070.4741	2.1627	0.0011597	2.1325	0.0011435	4.2952	0.0023033	536.2457689396828	32.062	0.17334	32.062	31.977	32.151	0					7	4	2	0	0	0	0.59277	1	11749	11749		35.152	2.3396	1	134890			36316	3970	24836	24926	36761	36761					-0.05831868612381186
SHLSSTSSLA	10	Unmodified	_SHLSSTSSLA_					0	0	0		ECT2|p.R877H|1|0.33|ENSG00000114346|chr3:172816812-172816812|G/A|missense_variant	ECT2|p.R877H|1|0.33|ENSG00000114346|chr3:172816812-172816812|G/A|missense_variant	ECT2|p.R877H|1|0.33|ENSG00000114346|chr3:172816812-172816812|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2474365234375	2	495.248546	988.482539	-1.5358	-0.0007606	-1.1445	-0.00056683	-2.6803	-0.0013274	495.2476395270519	40.318	0.15737	40.318	40.255	40.412	0					13	9	2	0	0	0	0.73511	1	13503	13503		10.866	0	1	81136			36317	878	24837	24927	36762	36762					-0.012163146957618665
SHPLGILTVR	10	Unmodified	_SHPLGILTVR_					0	0	0		PPP1R3F|p.D531V|1|0.19|ENSG00000049769|chrX:49286282-49286282|A/T|missense_variant	PPP1R3F|p.D531V|1|0.19|ENSG00000049769|chrX:49286282-49286282|A/T|missense_variant	PPP1R3F|p.D531V|1|0.19|ENSG00000049769|chrX:49286282-49286282|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.88897705078125	3	364.888986	1091.64513	1.0545	0.00038478	-1.322	-0.00048237	-0.26745	-9.7591E-05	364.88858332345114	19.885	0.16973	19.885	19.825	19.995	0					7	3	3	0	0	0	0.70274	1	6239	6239		21.686	1.689	1	385820			36318	11959	24838	24928	36763	36763					0.10297113496881138
SHRQMHLK	8	Unmodified	_SHRQMHLK_					0	0	0			REV__ENST00000580893.5_1_17:62486773-62489133:-|nuORF	REV__ENST00000580893.5_1_17:62486773-62489133:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7783203125	2	518.777085	1035.53962	1.5911	0.00082542	-0.13201	-6.8482E-05	1.4591	0.00075694	518.7770221431198	50.935	0.20697	50.935	50.835	51.042	0					21	12	3	0	0	0	0.72381	1	19994	19994		30.504	30.504	1	155730	+		36319	20451	24839	24929	36764	36764					0.02326874099617271
SHSAGDCSQ	9	Unmodified	_SHSAGDCSQ_					0	0	0		ENST00000374897.2_1_6:32796530-32796803:-|nuORF	ENST00000374897.2_1_6:32796530-32796803:-|nuORF	ENST00000374897.2_1_6:32796530-32796803:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.1659240722656	2	446.166699	890.318844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.157	1	50.157	49.657	50.657	0								0	0	0	0.38404	1	18851	18851		15.642	0.77694	1				36320	9021	24840	24930	36765	36765					-0.13070235738302927
SHTPQTPL	8	Unmodified	_SHTPQTPL_					0	0	0		TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR	TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant	TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.73028564453125	2	440.729792	879.445031	-3.0067	-0.0013251	2.772	0.0012217	-0.23471	-0.00010344	440.7309783619471	24.031	0.20166	24.031	23.877	24.078	0					10	5	2	0	0	0	0.7126	1	7402	7402		31.955	0	1	88387			36321	4393	24841	24931	36766	36766					0.00048638829287028784
SHYSEVEAEL	10	Unmodified	_SHYSEVEAEL_					0	0	0			REV__ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	REV__ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.2628784179688	2	582.264393	1162.51423	-0.035962	-2.094E-05	-0.89101	-0.0005188	-0.92697	-0.00053974	582.263910126277	21.644	0.079676	21.644	21.588	21.668	0					4	2	2	0	0	0	0.73697	1	6248	6248		15.642	1.5047	1	102700	+		36322	12160	24842	24932	36767	36767					-0.06052366732455994
SHYYTTLVTL	10	Unmodified	_SHYYTTLVTL_					0	0	0		ENSG00000171840|ENST00000305108|NINJ2	ENSG00000171840|ENST00000305108|NINJ2	ENSG00000171840|ENST00000305108|NINJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.87689208984375	3	399.876523	1196.60774	0.43867	0.00017541	0.73824	0.00029521	1.1769	0.00047062	399.8767944427108	30.377	0.94611	30.377	30.18	31.126	0					46	19	3	0	0	0	0.61238	1	11232	11232		32.751	0	1	511420			36323	6326	24843	24933	36768	36768					0.017299774406183133
SIAAAVAPK	9	Unmodified	_SIAAAVAPK_					0	0	0		MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;MCM10|p.K480R|1|0.2|ENSG00000065328|chr10:13191319-13191319|A/G|missense_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.25286865234375	2	414.252903	826.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.8	1	23.8	23.3	24.3	0								0	0	0	0.15451	1	7200	7200		58.782	5.4305	1				36324	1369	24844	24934	36769	36769					0.07106703731369635
SIAAAVAPK	9	Unmodified	_SIAAAVAPK_					0	0	0		MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;MCM10|p.K480R|1|0.2|ENSG00000065328|chr10:13191319-13191319|A/G|missense_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2527160644531	2	414.252903	826.491253	0.094887	3.9307E-05	-0.28343	-0.00011741	-0.18854	-7.8105E-05	414.2529003164133	23.745	0.1747	23.745	23.653	23.828	0					6	4	2	0	0	0	0.24095	1	7322	7322		56.721	17.915	1	50957			36325	1369	24844	24934	36770	36770					0.07106703731369635
SIAAAVEVCQ	10	Unmodified	_SIAAAVEVCQ_					0	0	0		LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant;LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.K1124Nfs*15|2|0.34|ENSG00000196569|chr6:129313053-129313053|A/-|frameshift_variant;LAMA2|p.N1765Mfs*26|1|0.4|ENSG00000196569|chr6:129393101-129393101|A/-|frameshift_variant	LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant	LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7483825683594	2	495.749867	989.485181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.438	1	28.438	27.938	28.938	0								0	0	0	0.3805	1	9439	9439		36.447	1.2947	1				36326	7379	24845	24935	36771	36771					-0.009981825624549856
SIAAVSGVKR	10	Unmodified	_SIAAVSGVKR_					0	0	0		nc|ENSG00000125337|Q9UIL4-2|KIF25;ENSG00000125337|ENST00000643607|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.8046569824219	2	494.300916	986.587279	-0.067016	-3.3126E-05	-0.27366	-0.00013527	-0.34068	-0.0001684	494.30058486994335	21.459	0.20258	21.459	21.377	21.579	0					18	8	3	0	0	0	0.56931	1	5950	5950		37.812	0.65241	1	525020			36327	3408	24846	24936	36772	36772					0.09344851571484014
SIAGSSIINK	10	Unmodified	_SIAGSSIINK_					0	0	0		ENST00000498255.6_1_13:42772627-42773776:+|nuORF;nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH	ENST00000498255.6_1_13:42772627-42773776:+|nuORF	ENST00000498255.6_1_13:42772627-42773776:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2851867675781	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.043	1	28.043	27.543	28.543	0								0	0	0	0.18965	1	10229	10229		65.465	9.9612	1				36328	2189	24847	24937	36773	36773					0.06057439097673978
SIAKFLRNV	9	Unmodified	_SIAKFLRNV_					0	0	0		ENST00000487293.2_1_2:170416895-170419880:-|nuORF;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENSG00000138399|ENST00000453153|FASTKD1	ENST00000487293.2_1_2:170416895-170419880:-|nuORF	ENST00000487293.2_1_2:170416895-170419880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.8817443847656	3	349.881831	1046.62366	1.4723	0.00051514	-1.529	-0.00053498	-0.056707	-1.9841E-05	349.88138389214663	20.486	0.31474	20.486	20.277	20.591	0					11	6	2	0	0	0	0.50858	1	6527	6527		31.53	0	1	976920			36329	4255	24848	24938	36774	36774					0.10221728468172842
SIALFKKV	8	Unmodified	_SIALFKKV_					0	0	0		SMPDL3B|p.G173Vfs*31|1|0.33|ENSG00000130768|chr1:27953352-27953352|A/-|frameshift_variant	SMPDL3B|p.G173Vfs*31|1|0.33|ENSG00000130768|chr1:27953352-27953352|A/-|frameshift_variant	SMPDL3B|p.G173Vfs*31|1|0.33|ENSG00000130768|chr1:27953352-27953352|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.29376220703125	2	453.294571	904.574589	0.72083	0.00032675	-1.143	-0.0005181	-0.42212	-0.00019135	453.29382402290634	33.716	0.40707	33.716	33.605	34.012	0					13	10	2	0	0	0	0.70055	1	12938	12938		33.516	0	1	288240			36330	22427	24849	24939	36775	36775					0.11848440179232966
SIAMLLENY	9	Unmodified	_SIAMLLENY_					0	0	0			REV__ENST00000529186.1_1_11:44129577-44137613:+|nuORF	REV__ENST00000529186.1_1_11:44129577-44137613:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2721557617188	2	527.267893	1052.52123	2.0964	0.0011054	1.5599	0.00082249	3.6563	0.0019279	527.2711749694688	31.167	0.25951	31.167	31.043	31.302	0					13	6	3	0	0	0	0.20551	1	11313	11313		60.972	0	1	369720	+		36331	15473	24850	24940	36776	36776					-0.002927253855887102
SIAMYLEY	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIAMYLEY_					1	0	0			REV__ENST00000568784.6_1_16:46694386-46722246:-|nuORF	REV__ENST00000568784.6_1_16:46694386-46722246:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2435302734375	2	516.241344	1030.46813	3.2766	0.0016915	1.007	0.00051988	4.2836	0.0022114	516.2418202835287	25.036	0.36319	25.036	24.884	25.247	0					13	7	2	0	0	0	0.52345	1	8701	8701		57.811	11.859	1	1164300	+		36332	13161	24851	24941	36777	36777					-0.04588103168248381
SIAPPVPLK	9	Unmodified	_SIAPPVPLK_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2920837402344	2	461.292028	920.569503	0.72259	0.00033333	-1.1218	-0.00051747	-0.39919	-0.00018415	461.29150502257045	33.931	0.38622	33.931	33.799	34.185	0					15	9	2	0	0	0	0.2873	1	13015	13015		51.335	20.832	1	157400			36333	330	24852	24942	36778	36778					0.10604136316612767
SIAPSLQVI	9	Unmodified	_SIAPSLQVI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2787780761719	2	464.279118	926.543683	0.095971	4.4557E-05	-0.99732	-0.00046304	-0.90135	-0.00041848	464.27854199032225	30.764	0.40636	30.764	30.458	30.865	0					13	9	2	0	0	0	0.51817	1	11139	11139		30.504	0	1	59736			36334	7609	24853	24943	36779	36779					0.07747242074333371
SIAQCGGRVP	10	Unmodified	_SIAQCGGRVP_					0	0	0		CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2586975097656	2	494.255651	986.496749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.527	1	31.527	31.027	32.027	0								0	0	0	0.27541	1	11795	11795		54.776	7.119	1				36335	715	24854	24944	36780	36780					0.002960592515478311
SIAQHFSVQ	9	Unmodified	_SIAQHFSVQ_					0	0	0			REV__nc|ENSG00000215695|Q92681|RSC1A1	REV__nc|ENSG00000215695|Q92681|RSC1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5102233886719	3	339.510174	1015.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.27	1	22.27	21.77	22.77	0								0	0	0	0.17378	1	7208	7208		53.089	0	1		+		36336	21214	24855	24945	36781	36781					0.0015599926639424666
SIASNVVKIIL	11	Unmodified	_SIASNVVKIIL_					0	0	0		nc|ENSG00000227152|P0C7T2|OR2T7;ENSG00000187701|ENST00000460972|OR2T27	nc|ENSG00000227152|P0C7T2|OR2T7	nc|ENSG00000227152|P0C7T2|OR2T7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.2481994628906	3	386.24818	1155.72271	0.0087039	3.3619E-06	-0.18764	-7.2474E-05	-0.17893	-6.9112E-05	386.248063293046	23.259	0.66206	23.259	23.123	23.785	0					21	15	2	0	0	0	0.53842	1	7664	7664		66.92	19.693	1	2327600			36337	7210	24856	24946	36782	36782					0.15107706642447738
SIAVASWGL	9	Unmodified	_SIAVASWGL_					0	0	0			REV__ENST00000546126.6_1_12:133758239-133761326:+|nuORF	REV__ENST00000546126.6_1_12:133758239-133761326:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2519226074219	2	452.25036	902.486168	3.8531	0.0017425	-0.10065	-4.5518E-05	3.7524	0.001697	452.2503708931511	30.029	0.25014	30.029	29.932	30.182	0					20	9	3	0	0	0	0.023949	1	9820	9820		115.46	115.46	1	549560	+		36338	20168	24857	24947	36783	36783					0.031023998687601306
SIAVGTSSLG	10	Unmodified	_SIAVGTSSLG_					0	0	0		ENST00000469214.2_1_1:193029070-193029313:+|nuORF	ENST00000469214.2_1_1:193029070-193029313:+|nuORF	ENST00000469214.2_1_1:193029070-193029313:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.24310302734375	2	446.242732	890.470912	0.82014	0.00036598	-0.078163	-3.488E-05	0.74198	0.0003311	446.24276164110904	15.258	0.31784	15.258	15.096	15.414	0					13	6	3	0	0	0	0.46215	1	4019	4019		49.442	7.0454	1	430370			36339	9823	24858	24948	36784	36784					0.02129488280922942
SIAVHSTGYIA	11	Unmodified	_SIAVHSTGYIA_					0	0	0			REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.53271484375	3	373.532868	1117.57677	0.75307	0.0002813	-0.86184	-0.00032192	-0.10877	-4.0627E-05	373.5324590509234	29.591	0.26258	29.591	29.485	29.748	0					12	5	4	0	0	0	0.69733	1	10871	10871		24.232	24.232	1	629750	+		36340	12905	24859	24949	36785	36785					0.02268824126394975
SICGKMFKK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))GKMFKK_	SIC(1)GKMFKK		SIC(67)GKMFKK		0	1	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.86456298828125	3	366.864795	1097.57256	0.75631	0.00027746	-1.4526	-0.00053291	-0.69629	-0.00025545	366.8644530531129	20.896	0.64553	20.896	20.799	21.444	0					33	15	4	0	0	0	0.15558	1	6552	6552		66.962	19.305	1	3654500			36341	2393	24860	24950	36786	36786	97				0.02767320107454907
SICGKMFKK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))GKMFKK_	SIC(1)GKMFKK		SIC(88)GKMFKK		0	1	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.793701171875	2	549.793555	1097.57256	0.53449	0.00029386	-0.63918	-0.00035142	-0.10469	-5.7558E-05	549.7935178488174	20.888	0.35257	20.888	20.782	21.135	0					21	8	4	0	0	0	0.07136	1	6559	6559		87.696	7.2418	1	3682900			36342	2393	24860	24950	36787	36787	97				0.02767320107454907
SICGKMFKK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))GKMFKK_	SIC(1)GKMFKK		SIC(88)GKMFKK		0	1	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7938842773438	2	549.793555	1097.57256	0.21281	0.000117	-0.05971	-3.2828E-05	0.1531	8.4175E-05	549.7938063236811	20.855	0.31464	20.855	20.747	21.062	0					19	6	5	0	0	0	0.07136	1	6807	6807		87.696	87.696	1	1538300			36343	2393	24860	24950	36788	36788	97				0.02767320107454907
SICGKSFTK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))GKSFTK_	SIC(1)GKSFTK		SIC(110)GKSFTK		0	1	0		nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.265625	2	514.265684	1026.51682	1.3541	0.00069638	-1.632	-0.00083927	-0.27785	-0.00014289	514.2648848662947	20.221	0.31639	20.221	20.112	20.428	0					12	6	3	0	0	0	0.026848	1	6529	6529		112.11	32.395	1	2103100			36344	3498	24861	24951	36789	36789	145				0.004618101914957151
SICGKSFTK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))GKSFTK_	SIC(1)GKSFTK		SIC(74)GKSFTK		0	1	0		nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2657470703125	2	514.265684	1026.51682	-1.61	-0.00082798	1.8261	0.0009391	0.21607	0.00011112	514.2665816339995	20.082	0.22339	20.082	19.997	20.22	0					8	5	3	0	0	0	0.12278	1	5585	5585		74.165	21.228	1	224530			36345	3498	24861	24951	36790	36790	145				0.004618101914957151
SICGKSFTK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))GKSFTK_	SIC(1)GKSFTK		SIC(100)GKSFTK		0	1	0		nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.265625	2	514.265684	1026.51682	1.4746	0.00075832	-1.7683	-0.00090936	-0.29371	-0.00015104	514.2649151817357	20.234	0.56459	20.234	20.128	20.692	0					19	11	3	0	0	0	0.037098	1	6405	6405		102.06	39.954	1	2124400			36346	3498	24861	24951	36791	36791	145				0.004618101914957151
SICGKTFNK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))GKTFNK_	SIC(1)GKTFNK		SIC(67)GKTFNK		0	1	0		ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7718505859375	2	527.771134	1053.52771	1.7523	0.00092484	0.89005	0.00046974	2.6424	0.0013946	527.7716960009534	19.718	0.31505	19.718	19.511	19.826	0					16	6	4	0	0	0	0.15163	1	6295	6295		67.494	14.142	1	1427400			36347	7065	24862	24952	36792	36792	297				0.003092125657985889
SICKGLNNK	9	Carbamidomethyl (C)	_SIC(Carbamidomethyl (C))KGLNNK_	SIC(1)KGLNNK		SIC(120)KGLNNK		0	1	0		ENST00000294753.8_1_1:247493325-247494987:-|nuORF	ENST00000294753.8_1_1:247493325-247494987:-|nuORF	ENST00000294753.8_1_1:247493325-247494987:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2764892578125	2	517.276583	1032.53861	-0.46875	-0.00024247	0.10135	5.2424E-05	-0.3674	-0.00019005	517.2767350136622	17.038	0.11769	17.038	16.98	17.098	0					6	2	3	0	0	0	0.021961	1	5000	5000		118.74	36.503	1	348840			36348	8445	24863	24953	36793	36793	368				0.02364614940051979
SICNRCVLK	9	Unmodified	_SICNRCVLK_					0	0	0		ENST00000459777.5_1_10:99206080-99216645:+|nuORF;ENST00000466895.5_1_10:99206080-99216645:+|nuORF;nc|ENSG00000171307|Q969W1-4|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16	ENST00000459777.5_1_10:99206080-99216645:+|nuORF	ENST00000459777.5_1_10:99206080-99216645:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.277587890625	2	518.275529	1034.53651	4.791	0.002483	-0.88514	-0.00045875	3.9058	0.0020243	518.27505315286	36.418	0.31767	36.418	36.285	36.603	0					36	17	3	0	0	0	0.35021	1	12321	12321		45.972	45.972	1	604990			36349	6290	24864	24954	36794	36794					0.02061862930577263
SICNSPASLG	10	Unmodified	_SICNSPASLG_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7261962890625	2	474.726392	947.438231	0.30132	0.00014304	-1.2954	-0.00061496	-0.99408	-0.00047192	474.72598828356905	24.452	0.53506	24.452	24.174	24.709	0					33	12	4	0	0	0	0.32758	1	8226	8226		64.207	4.089	1	1803600	+		36350	14139	24865	24955	36795	36795					-0.03759042113608757
SICTGTVRLG	10	Unmodified	_SICTGTVRLG_					0	0	0			REV__ENST00000339374.10_1_14:21458030-21458174:+|nuORF	REV__ENST00000339374.10_1_14:21458030-21458174:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7732849121094	2	503.771134	1005.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.643	1	37.643	37.143	38.143	0								0	0	0	0.3639	1	14734	14734		40.778	1.5253	1		+		36351	18439	24866	24956	36796	36796					0.025172125657718425
SIDISQAI	8	Unmodified	_SIDISQAI_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.7319641113281	2	423.732	845.449448	-0.27029	-0.00011453	-0.12557	-5.3207E-05	-0.39585	-0.00016774	423.7319614409092	28.491	0.16483	28.491	28.432	28.597	0					5	3	2	0	0	0	0.32815	1	10456	10456		79.451	0	1	145480	+		36352	14122	24867	24957	36797	36797					0.02054103252180539
SIDKFRDIGA	10	Unmodified	_SIDKFRDIGA_					0	0	0			REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1	REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.3041381835938	2	561.301113	1120.58767	1.7996	0.0010101	2.194	0.0012315	3.9936	0.0022416	561.3023233687146	39.316	0.36977	39.316	39.157	39.526	0					20	8	3	0	0	0	0.46128	1	15509	15509		49.536	3.5638	1	142550	+		36353	21752	24868	24958	36798	36798					0.032202265006844755
SIDKSVSVF	9	Unmodified	_SIDKSVSVF_					0	0	0		nc|ENSG00000254769|Q8NGN8|OR4A4P	nc|ENSG00000254769|Q8NGN8|OR4A4P	nc|ENSG00000254769|Q8NGN8|OR4A4P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2677917480469	2	491.266207	980.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.493	1	37.493	36.993	37.993	0								0	0	0	0.16876	1	14669	14669		55.504	2.1528	1				36354	11791	24869	24959	36799	36799					0.026823478320579852
SIDLPRRKK	9	Unmodified	_SIDLPRRKK_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.56817626953125	3	371.568135	1111.68258	0.77945	0.00028962	-1.2245	-0.00045497	-0.44501	-0.00016535	371.56767390466854	17.749	0.54852	17.749	17.46	18.009	0					23	13	3	0	0	0	0.61124	1	5092	5092		19.104	0.84144	1	294730			36355	4033	24870	24960	36800	36800					0.13120204762503818
SIDLPRRKK	9	Unmodified	_SIDLPRRKK_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.56805419921875	3	371.568135	1111.68258	0.79808	0.00029654	-1.0955	-0.00040706	-0.29742	-0.00011051	371.56770325357013	17.674	0.615	17.674	17.363	17.978	0					23	12	3	0	0	0	0.50858	1	5158	5158		31.53	12.426	1	443450			36356	4033	24870	24960	36801	36801					0.13120204762503818
SIDMGPQLK	9	Unmodified	_SIDMGPQLK_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7645568847656	2	494.760235	987.505917	0.92037	0.00045536	3.781	0.0018707	4.7014	0.0023261	494.76344713341484	33.339	0.51516	33.339	33.135	33.65	0					29	10	4	0	0	0	0.19605	1	12674	12674		62.107	0	1	1027100			36357	4520	24871	24961	36802	36802					0.011664078172202608
SIDQPRPSF	9	Unmodified	_SIDQPRPSF_					0	0	0			REV__ENST00000509973.5_1_4:84026116-84035878:-|nuORF	REV__ENST00000509973.5_1_4:84026116-84035878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7671508789062	2	523.766906	1045.51926	0.50164	0.00026274	-0.052506	-2.7501E-05	0.44914	0.00023524	523.7671233954093	17.69	0.66059	17.69	17.481	18.142	0					32	13	4	0	0	0	0.39215	1	5117	5117		42.396	5.237	1	312280	+		36358	19864	24872	24962	36803	36803					-0.0016801807919364364
SIDQVMKWA	9	Unmodified	_SIDQVMKWA_					0	0	0			REV__CACHD1|p.T598I|1|0.24|ENSG00000158966|chr1:64658868-64658868|C/T|missense_variant	REV__CACHD1|p.T598I|1|0.24|ENSG00000158966|chr1:64658868-64658868|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2755126953125	2	539.273509	1076.53247	3.4229	0.0018459	0.47003	0.00025347	3.8929	0.0020993	539.2736367036931	14.035	0.45624	14.035	13.783	14.239	0					16	9	3	0	0	0	0.055856	1	3408	3408		93.195	93.195	1	1582100	+		36359	12311	24873	24963	36804	36804					-0.0027390329144054704
SIDSSRKNK	9	Unmodified	_SIDSSRKNK_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.78271484375	2	517.783087	1033.55162	1.5392	0.00079699	-0.78358	-0.00040573	0.75565	0.00039126	517.7828919669546	11.283	0.070671	11.283	11.228	11.298	0					5	3	2	0	0	0	0.24095	1	2274	2274		56.721	5.3856	1	30718			36360	11700	24874	24964	36805	36805					0.036187693238161955
SIDVLLLTT	9	Unmodified	_SIDVLLLTT_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.79248046875	2	487.792058	973.569563	0.62568	0.0003052	0.16718	8.1551E-05	0.79287	0.00038675	487.79224620555726	25.644	0.44203	25.644	25.492	25.934	0					16	7	3	0	0	0	0.57706	1	9140	9140		24.203	24.203	1	1234600			36361	1904	24875	24965	36806	36806					0.08172091525955238
SIDYSRLNK	9	Unmodified	_SIDYSRLNK_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant;CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant;CEP162|p.R1099Efs*46|2|0.27|ENSG00000135315|chr6:84152880-84152881|-/T|frameshift_variant;CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162;CEP162|p.I224Nfs*16|1|0.5|ENSG00000135315|chr6:84203997-84203998|-/T|frameshift_variant	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.295654296875	2	548.293288	1094.57202	3.817	0.0020928	-0.17067	-9.3579E-05	3.6463	0.0019992	548.2936240053024	40.384	0.46515	40.384	40.283	40.748	0					22	10	3	0	0	0	0.037569	1	16039	16039		101.6	27.346	1	1368400			36362	480	24876	24966	36807	36807					0.028519399836113735
SIEDLLAL	8	Unmodified	_SIEDLLAL_					0	0	0			REV__ENST00000474543.5_1_20:57564608-57568882:+|nuORF	REV__ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2520751953125	2	437.250026	872.485499	0.62325	0.00027252	3.0528	0.0013348	3.676	0.0016073	437.2516868045998	34.298	0.16409	34.298	34.219	34.383	0					9	4	3	0	0	0	0.4723	1	12779	12779		62.978	8.2138	1	93421	+		36363	13587	24877	24967	36808	36808					0.04415560429049492
SIEFQEPVP	9	Unmodified	_SIEFQEPVP_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.1780700683594	3	349.178202	1044.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.65	1	43.65	43.15	44.15	0								0	0	0	0.34907	1	17474	17474		32.812	7.6864	1				36364	7450	24878	24968	36809	36809					-0.0076995603058094275
SIEGPSQAKI	10	Unmodified	_SIEGPSQAKI_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2835693359375	2	515.282389	1028.55022	1.4032	0.00072305	2.0912	0.0010775	3.4944	0.0018006	515.2834158076221	29.957	0.25591	29.957	29.851	30.107	0					7	5	2	0	0	0	0.41384	1	11160	11160		54.722	1.6334	1	491950			36365	3551	24879	24969	36810	36810					0.03709135235044414
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.1976013183594	3	339.197596	1014.57096	0.22733	7.7109E-05	-0.44024	-0.00014933	-0.21291	-7.2219E-05	339.19746082331574	19.336	0.18817	19.336	19.214	19.402	0					7	5	2	0	0	0	0.54861	1	4990	4990		44.639	8.1927	1	80900			36366	6841	24880	24970	36811	36811					0.06425725614724342
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.29296875	2	508.292756	1014.57096	-0.024841	-1.2627E-05	0.35882	0.00018239	0.33398	0.00016976	508.29279699487915	19.656	0.27677	19.656	19.508	19.784	0					20	6	5	0	0	0	0.030824	1	5959	5959		117.53	29.771	1	1962100			36367	6841	24880	24970	36812	36812					0.06425725614724342
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.1975402832031	3	339.197596	1014.57096	0.51254	0.00017385	-0.68072	-0.0002309	-0.16817	-5.7043E-05	339.1973592884793	19.655	0.27656	19.655	19.469	19.746	0					17	6	4	0	0	0	0.62149	1	5980	5980		36.528	14.747	1	753630			36368	6841	24880	24970	36813	36813					0.06425725614724342
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.29278564453125	2	508.292756	1014.57096	-0.57219	-0.00029084	3.8674	0.0019657	3.2952	0.0016749	508.295712142236	19.424	0.31956	19.424	19.243	19.562	0					15	9	3	0	0	0	0.36647	1	5232	5232		59.931	5.2084	1	188560			36369	6841	24880	24970	36814	36814					0.06425725614724342
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.29229736328125	2	508.292756	1014.57096	-0.46915	-0.00023847	0.064696	3.2884E-05	-0.40446	-0.00020558	508.2926831082516	19.345	0.15015	19.345	19.232	19.382	0					7	4	2	0	0	0	0.41384	1	5210	5210		54.722	1.7857	1	153720			36370	6841	24880	24970	36815	36815					0.06425725614724342
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.19769287109375	3	339.197596	1014.57096	0.53032	0.00017988	-0.36091	-0.00012242	0.16941	5.7465E-05	339.1974969646975	19.551	0.31317	19.551	19.396	19.71	0					17	6	4	0	0	0	0.15878	1	6186	6186		86.882	33.285	1	1119200			36371	6841	24880	24970	36816	36816					0.06425725614724342
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2923583984375	2	508.292756	1014.57096	-0.38819	-0.00019732	0.46572	0.00023672	0.07753	3.9408E-05	508.2928440417183	19.551	0.21219	19.551	19.396	19.609	0					8	4	2	0	0	0	0.2538	1	6189	6189		72.879	9.3454	1	697110			36372	6841	24880	24970	36817	36817					0.06425725614724342
SIEKGGSLPK	10	Unmodified	_SIEKGGSLPK_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2928771972656	2	508.292756	1014.57096	-1.8935	-0.00096248	3.4148	0.0017357	1.5213	0.00077326	508.29440010621715	19.394	0.27351	19.394	19.262	19.535	0					10	6	2	0	0	0	0.18316	1	5248	5248		81.525	21.407	1	327140			36373	6841	24880	24970	36818	36818					0.06425725614724342
SIELHKEAF	9	Unmodified	_SIELHKEAF_					0	0	0			REV__GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	REV__GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.28466796875	2	537.284931	1072.55531	-0.36996	-0.00019877	1.2836	0.00068968	0.91368	0.00049091	537.2860964745429	27.33	0.11818	27.33	27.272	27.39	0					8	4	2	0	0	0	0.41113	1	8704	8704		40.778	1.7567	1	77304	+		36374	14322	24881	24971	36819	36819					0.021934390976412033
SIENLQHEC	9	Unmodified	_SIENLQHEC_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7410888671875	2	536.740031	1071.46551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.358	1	28.358	27.858	28.858	0								0	0	0	0.28666	1	9402	9402		37.812	0.65241	1				36375	2268	24882	24972	36820	36820					-0.06736558573220464
SIEPGGIDITL	11	Unmodified	_SIEPGGIDITL_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.2049255371094	3	372.204528	1113.59175	0.49553	0.00018444	0.2701	0.00010053	0.76563	0.00028497	372.20465379150266	18.136	0.15094	18.136	18.069	18.22	0					10	5	3	0	0	0	0.64562	1	4467	4467		42.338	15.291	1	583410			36376	2709	24883	24973	36821	36821					0.039502712037119636
SIERLPVY	8	Unmodified	_SIERLPVY_					0	0	0		nc|ENSG00000152256|Q15118-2|PDK1;ENSG00000152256|ENST00000282077|PDK1;PDK1|p.A406D|1|0.45|ENSG00000152256|chr2:172595875-172595875|C/A|missense_variant	nc|ENSG00000152256|Q15118-2|PDK1	nc|ENSG00000152256|Q15118-2|PDK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7763977050781	2	488.776742	975.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.033	1	30.033	29.533	30.533	0								0	0	0	1.7419	1	11071	11071		51.335	3.6781	1				36377	5006	24884	24974	36822	36822					0.05018357931567152
SIERYHILQ	9	Unmodified	_SIERYHILQ_					0	0	0		nc|ENSG00000104643|Q96QG7-2|MTMR9;ENST00000530200.1_1_8:11152806-11180294:+|nuORF;ENSG00000104643|ENST00000221086|MTMR9	nc|ENSG00000104643|Q96QG7-2|MTMR9	nc|ENSG00000104643|Q96QG7-2|MTMR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.8172607421875	2	579.81693	1157.61931	-0.38606	-0.00022385	1.0123	0.00058692	0.62619	0.00036308	579.8175674673787	27.397	0.26633	27.397	27.287	27.554	0					11	5	3	0	0	0	0.078509	1	9931	9931		85.161	12.282	1	497140			36378	2298	24885	24975	36823	36823					0.0468021925460107
SIEVMLMKS	9	Oxidation (M)	_SIEVMLM(Oxidation (M))KS_		SIEVM(0.002)LM(0.998)KS		SIEVM(-27)LM(27)KS	0	0	1			REV__ENST00000340080.8_1_7:7606567-7607293:+|nuORF	REV__ENST00000340080.8_1_7:7606567-7607293:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.8503112792969	3	351.848811	1052.5246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.473	1	24.473	23.973	24.973	0								0	0	0	0.16453	1	8448	8448		56.434	12.057	2		+		36379	18443	24886	24976	36824	36824		688			0.00044201396758580813
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.3141479492188	2	546.314023	1090.61349	1.2089	0.00066046	-1.1282	-0.00061635	0.080732	4.4105E-05	546.3132211742509	30.766	1.0667	30.766	30.646	31.713	0					122	44	5	0	0	0	0.073361	2	9809	9809;9948		101.46	19.371	1	16827000			36380	4531	24887	24977	36825;36826	36825					0.07181120742939129
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3141479492188	2	546.314023	1090.61349	1.8051	0.00098615	-1.3639	-0.00074511	0.44121	0.00024104	546.3131818357459	31.061	0.31426	31.061	30.928	31.242	0					12	7	2	0	0	0	0.073361	1	11239	11239		101.46	22.009	1	888710			36381	4531	24887	24977	36827	36827					0.07181120742939129
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.314208984375	2	546.314023	1090.61349	0.42786	0.00023375	-0.68921	-0.00037653	-0.26135	-0.00014278	546.3135707482389	31.041	2.2142	31.041	30.905	33.119	0					165	55	5	0	0	0	0.073361	2	11221	11221;11398		101.46	10.859	1	92143000			36382	4531	24887	24977	36828;36829	36828					0.07181120742939129
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3146362304688	2	546.314023	1090.61349	0.83554	0.00045647	0.056716	3.0985E-05	0.89226	0.00048745	546.3141296162646	31.004	0.24868	31.004	30.909	31.157	0					13	5	4	0	0	0	0.24329	1	11659	11659		74.165	4.5374	1	663030			36383	4531	24887	24977	36830	36830					0.07181120742939129
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3140258789062	2	546.314023	1090.61349	1.8788	0.0010264	-1.7464	-0.00095407	0.13242	7.2343E-05	546.3124830635527	31.032	0.50279	31.032	30.935	31.438	0					27	11	3	0	0	0	0.28675	1	11651	11651		68.846	8.7279	1	1443900			36384	4531	24887	24977	36831	36831					0.07181120742939129
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3140869140625	2	546.314023	1090.61349	0.33485	0.00018293	-0.40937	-0.00022365	-0.074523	-4.0713E-05	546.313703585964	31.02	1.8783	31.02	30.88	32.759	0					106	42	5	0	0	0	0.01518	1	11643	11643		128.6	32.787	1	45109000			36385	4531	24887	24977	36832	36832					0.07181120742939129
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3140869140625	2	546.314023	1090.61349	-1.5011	-0.00082009	1.6145	0.00088203	0.11337	6.1936E-05	546.3147265645201	30.829	1.0986	30.829	30.68	31.778	0					83	29	5	0	0	0	0.080628	1	10517	10517		99.013	10.836	1	16027000			36386	4531	24887	24977	36833	36833					0.07181120742939129
SIFDLHQSI	9	Unmodified	_SIFDLHQSI_					0	0	0			REV__ENST00000472064.1_1_1:203149576-203151929:-|nuORF	REV__ENST00000472064.1_1_1:203149576-203151929:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2778930664062	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.023	1	26.023	25.523	26.523	0								0	0	0	0.19847	1	7859	7859		51.193	0	1		+		36387	14692	24888	24978	36834	36834					0.012731525806202626
SIFDVQVKR	9	Unmodified	_SIFDVQVKR_					0	0	0		tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.5447692871094	3	364.545108	1090.61349	0.84096	0.00030657	-1.2402	-0.00045212	-0.39928	-0.00014555	364.5447529708895	31.061	1.4421	31.061	30.889	32.331	0					93	35	6	0	0	0	0.51817	1	11414	11414		45.972	16.802	1	103630000			36388	22814	24889	24979	36835	36835					0.07181120742939129
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.8084716796875	2	581.808771	1161.60299	1.4986	0.00087189	-0.98971	-0.00057582	0.50888	0.00029607	581.8080422570022	23.224	0.34968	23.224	23.033	23.383	0					20	10	3	0	0	0	0.20042	1	6648	6648		65.278	28.831	1	240490			36389	5378	24890	24980	36836	36836					0.028650932978507626
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.8090209960938	2	581.808771	1161.60299	3.7676	0.002192	-2.3914	-0.0013913	1.3761	0.00080065	581.807375457545	23.275	0.31456	23.275	23.071	23.385	0					21	10	3	0	0	0	0.20322	1	6944	6944		74.165	19.389	1	144750			36390	5378	24890	24980	36837	36837					0.028650932978507626
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.8110961914062	2	581.808771	1161.60299	1.1356	0.00066071	-0.72259	-0.00042041	0.41303	0.0002403	581.8082986534108	23.488	0.56596	23.488	23.162	23.728	0					31	11	4	0	0	0	0.14623	1	8010	8010		72.243	12.076	1	1117200			36391	5378	24890	24980	36838	36838					0.028650932978507626
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.8099365234375	2	581.808771	1161.60299	0.94061	0.00054726	-0.0074562	-4.3381E-06	0.93315	0.00054292	581.8087039345993	23.275	0.32415	23.275	23.094	23.418	0					17	7	3	0	0	0	0.16041	1	7045	7045		89.029	11.711	1	165210			36392	5378	24890	24980	36839	36839					0.028650932978507626
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.8087768554688	2	581.808771	1161.60299	0.12608	7.3353E-05	0.36511	0.00021242	0.49119	0.00028578	581.808954382163	23.492	0.51646	23.492	23.184	23.7	0					33	10	4	0	0	0	0.015994	1	7913	7913		125.68	32.487	1	1505400			36393	5378	24890	24980	36840	36840					0.028650932978507626
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2533264160156	2	438.252903	874.491253	0.25815	0.00011314	0.57963	0.00025403	0.83778	0.00036716	438.253028169386	33.137	0.25027	33.137	33.03	33.281	0					23	11	3	0	0	0	0.24095	1	10734	10734		56.721	14.247	1	136370			36394	1336	24891	24981	36841	36841					0.04898703731373644
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2525634765625	2	438.252903	874.491253	0.59935	0.00026267	-0.52307	-0.00022924	0.076285	3.3432E-05	438.2526045104962	33.421	0.49199	33.421	33.26	33.752	0					33	12	4	0	0	0	0.087861	1	12330	12330		82.241	32.799	1	1157600			36395	1336	24891	24981	36842	36842					0.04898703731373644
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.25262451171875	2	438.252903	874.491253	-0.96558	-0.00042317	0.52619	0.00023061	-0.43938	-0.00019256	438.2530251664223	33.184	0.36745	33.184	33.072	33.44	0					30	15	3	0	0	0	0.17854	1	11114	11114		64.207	20.09	1	337980			36396	1336	24891	24981	36843	36843					0.04898703731373644
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.2529296875	2	438.252903	874.491253	0.67763	0.00029698	-0.95557	-0.00041878	-0.27793	-0.0001218	438.2524053784064	33.395	0.35843	33.395	33.259	33.618	0					25	8	4	0	0	0	0.087861	1	12767	12767		82.241	29.304	1	2261000			36397	1336	24891	24981	36844	36844					0.04898703731373644
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2530822753906	2	438.252903	874.491253	0.31165	0.00013658	0.043221	1.8942E-05	0.35487	0.00015552	438.25286229370033	33.191	0.16863	33.191	33.074	33.242	0					12	5	3	0	0	0	0.22377	1	11617	11617		58.782	16.307	1	72547			36398	1336	24891	24981	36845	36845					0.04898703731373644
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2527770996094	2	438.252903	874.491253	-0.61088	-0.00026772	0.084024	3.6824E-05	-0.52686	-0.0002309	438.2528790645837	33.16	0.32526	33.16	33.066	33.392	0					21	10	3	0	0	0	0.16002	1	11598	11598		66.429	23.955	1	346160			36399	1336	24891	24981	36846	36846					0.04898703731373644
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2532653808594	2	438.252903	874.491253	-0.57475	-0.00025188	1.0425	0.00045688	0.46776	0.000205	438.2532598528302	33.357	0.46879	33.357	33.199	33.667	0					21	9	4	0	0	0	0.24095	1	12640	12640		56.721	19.562	1	790910			36400	1336	24891	24981	36847	36847					0.04898703731373644
SIFGGAKPV	9	Unmodified	_SIFGGAKPV_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.25299072265625	2	438.252903	874.491253	2.6619	0.0011666	-2.2495	-0.00098584	0.41243	0.00018075	438.2516199863088	33.367	0.4185	33.367	33.215	33.633	0					24	8	4	0	0	0	0.13267	1	12668	12668		71.877	11.584	1	1079800			36401	1336	24891	24981	36848	36848					0.04898703731373644
SIFGGTDMKK	10	Unmodified	_SIFGGTDMKK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.27978515625	2	542.278792	1082.54303	-0.16116	-8.7391E-05	0.3835	0.00020796	0.22234	0.00012057	542.2793016115471	26.267	0.11401	26.267	26.199	26.313	0					6	3	2	0	0	0	0.44292	1	8229	8229		51.528	10.101	1	138030			36402	1996	24892	24982	36849	36849					0.0050607936295818945
SIFGGTDMKK	10	Unmodified	_SIFGGTDMKK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.279052734375	2	542.278792	1082.54303	0.31656	0.00017167	0.25738	0.00013957	0.57395	0.00031124	542.2789848712758	26.501	0.26712	26.501	26.443	26.71	0					13	5	4	0	0	0	0.030421	1	9503	9503		117.81	30.115	1	777610			36403	1996	24892	24982	36850	36850					0.0050607936295818945
SIFHQKAEK	9	Unmodified	_SIFHQKAEK_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;ENST00000504606.1_1_5:14291106-14297405:+|nuORF	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2987060546875	2	544.298373	1086.58219	0.32478	0.00017678	0.56791	0.00030911	0.89269	0.00048589	544.2986817214229	17.293	0.20568	17.293	17.183	17.388	0					7	4	2	0	0	0	0.10506	1	5123	5123		78.264	25.327	1	518160			36404	1182	24893	24983	36851	36851					0.042365477088424086
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.3140258789062	2	524.313492	1046.61243	2.2338	0.0011712	-0.28274	-0.00014824	1.951	0.0010229	524.3132763059008	23.99	0.32984	23.99	23.857	24.187	0					22	10	3	0	0	0	0.024312	1	6991	6991		114.86	24.488	1	223900			36405	1477	24894	24984	36852	36852					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.8781433105469	3	349.878087	1046.61243	0.41046	0.00014361	-0.52831	-0.00018484	-0.11785	-4.1233E-05	349.87790509372377	23.989	0.32909	23.989	23.87	24.199	0					26	10	4	0	0	0	0.38666	1	6985	6985		58.246	20.738	1	1798600			36406	1477	24894	24984	36853	36853					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.314208984375	2	524.313492	1046.61243	1.438	0.00075397	-0.42488	-0.00022277	1.0131	0.00053121	524.3132272675876	23.989	0.27026	23.989	23.87	24.14	0					26	8	4	0	0	0	0.00065248	1	6996	6996		186.41	87.781	1	828910			36407	1477	24894	24984	36854	36854					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.3138427734375	2	524.313492	1046.61243	1.8143	0.00095129	-1.4287	-0.00074907	0.38567	0.00020221	524.3126612994711	24.269	0.66743	24.269	24.131	24.798	0					38	15	5	0	0	0	0.0021879	1	8139	8139		173.39	77.358	1	5924700			36408	1477	24894	24984	36855	36855					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.3135375976562	2	524.313492	1046.61243	1.0102	0.00052965	-0.74026	-0.00038813	0.26992	0.00014152	524.3129346610787	24.222	1.3134	24.222	24.062	25.375	0					65	26	6	0	0	0	0.0030642	2	8412	8412;8578		168.26	72.443	1	33557000			36409	1477	24894	24984	36856;36857	36856					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.3146362304688	2	524.313492	1046.61243	1.5932	0.00083536	-0.79128	-0.00041488	0.80197	0.00042048	524.3130829354769	24.055	0.39227	24.055	23.937	24.329	0					25	9	4	0	0	0	0.0021879	1	7412	7412		173.39	72.139	1	2576600			36410	1477	24894	24984	36858	36858					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.313720703125	2	524.313492	1046.61243	0.52159	0.00027348	-0.22134	-0.00011605	0.30025	0.00015742	524.3132701125122	24.187	0.71124	24.187	24.028	24.739	0					49	14	6	0	0	0	5.2046E-05	2	8293	8293;8469		195.57	91.516	1	28342000			36411	1477	24894	24984	36859;36860	36859					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3134765625	2	524.313492	1046.61243	1.626	0.00085253	-1.4254	-0.00074736	0.20059	0.00010517	524.3127528192169	24.171	0.3183	24.171	24.062	24.38	0					11	6	2	0	0	0	0.02429	1	8310	8310		114.89	46.108	1	843670			36412	1477	24894	24984	36861	36861					0.09098906374038052
SIFNNVVI	8	Unmodified	_SIFNNVVI_					0	0	0			REV__HMCN1|p.V2976I|1|0.21|ENSG00000143341|chr1:186086287-186086287|G/A|missense_variant	REV__HMCN1|p.V2976I|1|0.21|ENSG00000143341|chr1:186086287-186086287|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7597961425781	2	453.258185	904.501818	-0.0075572	-3.4254E-06	-0.53979	-0.00024467	-0.54735	-0.00024809	453.2578895541092	33.299	0.40178	33.299	33.171	33.573	0					38	14	4	0	0	0	0.64096	1	10794	10794		42.474	0.078325	1	812980	+		36413	20750	24895	24985	36862	36862					0.04574686385797122
SIFRRDTMIGT	11	Unmodified	_SIFRRDTMIGT_					0	0	0			REV__NRXN2|p.E867D|1|0.14|ENSG00000110076|chr11:64651572-64651572|C/G|missense_variant	REV__NRXN2|p.E867D|1|0.14|ENSG00000110076|chr11:64651572-64651572|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.894775390625	3	432.895812	1295.66561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.996	1	28.996	28.496	29.496	0								0	0	0	0.37939	1	10309	10309		41.08	3.4802	1		+		36414	21309	24896	24986	36863	36863					0.029599160943917013
SIFRTPISK	9	Unmodified	_SIFRTPISK_					0	0	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant;ASPM|p.K671Nfs*3|1|0.21|ENSG00000066279|chr1:197139780-197139780|T/-|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8118896484375	2	524.811116	1047.60768	1.4152	0.00074273	-0.63831	-0.00033499	0.77693	0.00040774	524.810810626723	30.018	0.27363	30.018	29.846	30.119	0					16	10	3	0	0	0	0.40353	1	9551	9551		41.427	0.64845	1	119200			36415	1390;243	24897	24987	36864	36864					0.08578022231267823
SIFRTPISK	9	Unmodified	_SIFRTPISK_					0	0	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant;ASPM|p.K671Nfs*3|1|0.21|ENSG00000066279|chr1:197139780-197139780|T/-|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8120727539062	2	524.811116	1047.60768	1.7789	0.00093358	-0.77692	-0.00040774	1.002	0.00052584	524.8105480115131	30.244	0.86461	30.244	29.599	30.464	0					30	18	4	0	0	0	0.063171	1	11267	11267		90.601	26.394	1	850480			36416	1390;243	24897	24987	36865	36865					0.08578022231267823
SIFRTPISK	9	Unmodified	_SIFRTPISK_					0	0	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant;ASPM|p.K671Nfs*3|1|0.21|ENSG00000066279|chr1:197139780-197139780|T/-|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8112182617188	2	524.811116	1047.60768	0.54286	0.0002849	0.20061	0.00010528	0.74347	0.00039018	524.8112272873968	30.206	0.4116	30.206	29.997	30.408	0					16	8	3	0	0	0	0.048471	1	11165	11165		95.815	21.56	1	298960			36417	1390;243	24897	24987	36866	36866					0.08578022231267823
SIFRTPISK	9	Unmodified	_SIFRTPISK_					0	0	0		ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant;ASPM|p.K671Nfs*3|1|0.21|ENSG00000066279|chr1:197139780-197139780|T/-|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant	ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8116455078125	2	524.811116	1047.60768	1.6267	0.00085371	-0.94305	-0.00049492	0.68366	0.00035879	524.8104760962481	30.219	0.51138	30.219	29.93	30.441	0					23	10	4	0	0	0	0.017741	1	11135	11135		125.71	40.797	1	1063200			36418	1390;243	24897	24987	36867	36867					0.08578022231267823
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2	ENSG00000072518|ENST00000402010|MARK2	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7906494140625	2	522.78985	1043.56515	0.78904	0.0004125	-0.31798	-0.00016624	0.47105	0.00024626	522.789705975531	33.706	0.24718	33.706	33.612	33.859	0					20	10	3	0	0	0	0.22837	1	10965	10965		58.23	5.2932	1	228120			36419	1494	24898	24988	36868	36868					0.04510627103036313
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2	ENSG00000072518|ENST00000402010|MARK2	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7899169921875	2	522.78985	1043.56515	0.086705	4.5328E-05	0.2945	0.00015396	0.38121	0.00019929	522.7898511941071	33.956	0.34823	33.956	33.833	34.181	0					26	9	4	0	0	0	0.032181	1	12592	12592		106.88	44.773	1	2175200			36420	1494	24898	24988	36869	36869					0.04510627103036313
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2	ENSG00000072518|ENST00000402010|MARK2	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7900390625	2	522.78985	1043.56515	1.7968	0.00093937	-0.8345	-0.00043627	0.96235	0.0005031	522.7894030026301	33.956	0.97211	33.956	33.799	34.771	0					37	24	4	0	0	0	0.046074	1	13031	13031		96.665	29.171	1	2301100			36421	1494	24898	24988	36870	36870					0.04510627103036313
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2	ENSG00000072518|ENST00000402010|MARK2	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7902221679688	2	522.78985	1043.56515	-1.2956	-0.00067732	2.0715	0.001083	0.77592	0.00040564	522.7908209651306	33.739	0.32986	33.739	33.56	33.89	0					18	9	3	0	0	0	0.085655	1	11850	11850		82.75	20.643	1	293640			36422	1494	24898	24988	36871	36871					0.04510627103036313
SIFYDSTYR	9	Unmodified	_SIFYDSTYR_					0	0	0			REV__nc|ENSG00000134954|P14921-5|ETS1	REV__nc|ENSG00000134954|P14921-5|ETS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.2711791992188	2	576.272021	1150.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.932	1	15.932	15.432	16.432	0								0	0	0	0.38667	1	3670	3670		14.865	1.9057	1		+		36423	14773	24899	24989	36872	36872					-0.039754551446321784
SIGDIKDIK	9	Unmodified	_SIGDIKDIK_					0	0	0		EBLN2|p.A106Qfs*6|1|0.12|ENSG00000255423|chr3:73062391-73062391|A/-|frameshift_variant;ENSG00000255423|ENST00000533473|EBLN2	EBLN2|p.A106Qfs*6|1|0.12|ENSG00000255423|chr3:73062391-73062391|A/-|frameshift_variant	EBLN2|p.A106Qfs*6|1|0.12|ENSG00000255423|chr3:73062391-73062391|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7873229980469	2	494.787307	987.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.785	1	38.785	38.285	39.285	0								0	0	0	0.22284	1	13068	13068		47.657	3.2801	1				36424	871	24900	24990	36873	36873					0.065783232404101
SIGDIKLELK	10	Unmodified	_SIGDIKLELK_					0	0	0			REV__tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1	REV__tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.558349609375	3	372.560535	1114.65977	-0.30651	-0.00011419	0.051237	1.9089E-05	-0.25528	-9.5106E-05	372.5605621096185	18.428	0.56116	18.428	18.223	18.784	0					27	11	4	0	0	0	0.39827	1	5476	5476		56.434	1.7114	1	3229200	+		36425	21764	24901	24991	36874	36874					0.10703140854343474
SIGDLKDEKF	10	Unmodified	_SIGDLKDEKF_					0	0	0			REV__tr|U7T2M2|U7T2M2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00755PE=4SV=1	REV__tr|U7T2M2|U7T2M2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00755PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.5362243652344	3	384.536278	1150.587	0.58124	0.00022351	-0.69174	-0.000266	-0.1105	-4.2491E-05	384.5360345319053	21.679	0.26887	21.679	21.571	21.84	0					13	5	4	0	0	0	0.52707	1	7106	7106		46.457	8.9486	1	1612400	+		36426	22110	24902	24992	36875	36875					0.01773387060939058
SIGERERSK	9	Unmodified	_SIGERERSK_					0	0	0			REV__ENSG00000197168|ENST00000684899|NEK5	REV__ENSG00000197168|ENST00000684899|NEK5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.290283203125	2	531.288537	1060.56252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.556	1	32.556	32.056	33.056	0								0	0	0	0.23445	1	12383	12383		45.972	1.8554	1		+		36427	17317	24903	24993	36876	36876					0.03466171698096332
SIGEVTTPK	9	Unmodified	_SIGEVTTPK_					0	0	0		ENST00000411573.6_1_17:45977579-45977684:-|nuORF	ENST00000411573.6_1_17:45977579-45977684:-|nuORF	ENST00000411573.6_1_17:45977579-45977684:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2581787109375	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.492	1	29.492	28.992	29.992	0								0	0	0	0.1633	1	9928	9928		56.721	3.3696	1				36428	9311	24904	24994	36877	36877					0.03418061315005616
SIGGIIILK	9	Unmodified	_SIGGIIILK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;ENST00000491229.1_1_2:232035243-232035423:+|nuORF	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.30755615234375	2	457.307678	912.600803	-0.43503	-0.00019894	-0.034311	-1.5691E-05	-0.46934	-0.00021463	457.307789530664	43.127	0.14904	43.127	43.082	43.231	0					7	4	2	0	0	0	0.16002	1	17260	17260		66.429	0	1	107780			36429	6444	24905	24995	36878	36878					0.141007093507028
SIGKSPTK	8	Unmodified	_SIGKSPTK_					0	0	0			REV__nc|ENSG00000164287|Q86Y33-5|CDC20B	REV__nc|ENSG00000164287|Q86Y33-5|CDC20B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.2427978515625	2	409.242535	816.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.132	1	24.132	23.632	24.632	0								0	0	0	1.7419	1	8085	8085		45.972	6.7194	1		+		36430	15977	24906	24996	36879	36879					0.05494113351710439
SIGLRIKSP	9	Unmodified	_SIGLRIKSP_					0	0	0			REV__ENST00000513585.5_1_5:112312601-112328430:+|nuORF	REV__ENST00000513585.5_1_5:112312601-112328430:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.2062072753906	3	324.206315	969.597115	-0.7026	-0.00022779	0.39642	0.00012852	-0.30619	-9.9267E-05	324.20641998973	24.209	0.14477	24.209	24.139	24.284	0					7	4	2	0	0	0	0.61124	1	7383	7383		25.574	13.367	1	229290	+		36431	19893	24907	24997	36880	36880					0.11110039576840336
SIGNLTQLQ	9	Unmodified	_SIGNLTQLQ_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.27001953125	2	487.269281	972.52401	-1.2444	-0.00060636	2.4145	0.0011765	1.1701	0.00057014	487.27041936528474	21.574	0.18966	21.574	21.453	21.643	0					14	6	3	0	0	0	0.048471	1	6208	6208		95.815	16.103	1	292500			36432	4824	24908	24998	36881	36881					0.03664866063570571
SIGNLTQLQ	9	Unmodified	_SIGNLTQLQ_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2692565917969	2	487.269281	972.52401	0.63058	0.00030726	-0.63317	-0.00030852	-0.002589	-1.2616E-06	487.2693472044299	21.767	0.31667	21.767	21.509	21.825	0					17	6	5	0	0	0	0.07136	1	7276	7276		87.696	2.5356	1	1858400			36433	4824	24908	24998	36882	36882					0.03664866063570571
SIGNLTQLQ	9	Unmodified	_SIGNLTQLQ_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.26953125	2	487.269281	972.52401	-2.9122	-0.001419	2.7361	0.0013332	-0.1761	-8.581E-05	487.2709322774143	21.625	0.25377	21.625	21.465	21.719	0					12	6	4	0	0	0	0.098791	1	6297	6297		79.713	2.395	1	257280			36434	4824	24908	24998	36883	36883					0.03664866063570571
SIGPVGKSK	9	Unmodified	_SIGPVGKSK_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7637023925781	2	436.763635	871.512717	-0.27754	-0.00012122	-0.36035	-0.00015739	-0.6379	-0.00027861	436.76350312177254	16.663	0.24889	16.663	16.529	16.778	0					24	8	4	0	0	0	0.16806	1	3814	3814		65.465	12.114	1	1555400			36435	1356	24909	24999	36884	36884					0.07182088760100669
SIGPVGKSK	9	Unmodified	_SIGPVGKSK_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7634582519531	2	436.763635	871.512717	-0.40573	-0.00017721	-0.11292	-4.932E-05	-0.51865	-0.00022653	436.7635974787461	16.977	0.77083	16.977	16.809	17.579	0					38	19	4	0	0	0	0.082776	1	4677	4677		83.647	26.926	1	8073900			36436	1356	24909	24999	36885	36885					0.07182088760100669
SIGPVGKSK	9	Unmodified	_SIGPVGKSK_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.763427734375	2	436.763635	871.512717	-1.0255	-0.00044789	0.56239	0.00024563	-0.46309	-0.00020226	436.7638735621469	16.676	0.31415	16.676	16.537	16.851	0					26	12	3	0	0	0	0.27123	1	4022	4022		53.089	15.93	1	631740			36437	1356	24909	24999	36886	36886					0.07182088760100669
SIGRAIRHQ	9	Unmodified	_SIGRAIRHQ_					0	0	0		ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;ENST00000435753.6_1_12:31250908-31256767:+|nuORF;nc|ENSG00000214826|Q92771|DDX12P	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.3032836914062	2	519.301781	1036.58901	3.3573	0.0017435	-0.28772	-0.00014941	3.0696	0.0015941	519.3016321603081	27.807	0.61728	27.807	27.577	28.194	0					40	12	4	0	0	0	0.37744	1	9975	9975		52.937	5.2794	1	1126900			36438	1070	24910	25000	36887	36887					0.07217905380070988
SIGSFIAKDV	10	Unmodified	_SIGSFIAKDV_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.788330078125	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.726	1	39.726	39.226	40.226	0								0	0	0	0.33107	1	15633	15633		45.972	0.020292	1		+		36439	16196	24911	25001	36888	36888					0.04370323240414109
SIGSLVTTWV	10	Unmodified	_SIGSLVTTWV_					0	0	0			REV__ENST00000262241.6_1_14:103192864-103193323:+|nuORF	REV__ENST00000262241.6_1_14:103192864-103193323:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7935791015625	2	531.795132	1061.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.877	1	16.877	16.377	17.377	0								0	0	0	0.3639	1	4764	4764		40.778	2.9666	1		+		36440	18029	24912	25002	36889	36889					0.04738609757464474
SIGTPLDPK	9	Unmodified	_SIGTPLDPK_					0	0	0		WDR35|p.R782*|1|0.2|ENSG00000118965|chr2:19936322-19936323|-/A|frameshift_variant;ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	WDR35|p.R782*|1|0.2|ENSG00000118965|chr2:19936322-19936323|-/A|frameshift_variant	WDR35|p.R782*|1|0.2|ENSG00000118965|chr2:19936322-19936323|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.26025390625	2	464.260925	926.507297	-2.3626	-0.0010968	1.5857	0.00073619	-0.77685	-0.00036066	464.2616013499347	28.68	0.2877	28.68	28.506	28.793	0					12	7	2	0	0	0	0.38666	1	9574	9574		42.864	0.46813	1	53115			36441	3090	24913	25003	36890	36890					0.04110365177609765
SIGVTAPT	8	Unmodified	_SIGVTAPT_					0	0	0			REV__ENST00000230056.7_1_6:24775218-24775341:+|nuORF	REV__ENST00000230056.7_1_6:24775218-24775341:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098693847656	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.093	1	50.093	49.593	50.593	0								0	0	0	1.7419	1	19789	19789		25.45	3.7478	1		+		36442	17913	24914	25004	36891	36891					0.019344490519983992
SIHDFCLVSK	10	Carbamidomethyl (C)	_SIHDFC(Carbamidomethyl (C))LVSK_	SIHDFC(1)LVSK		SIHDFC(73)LVSK		0	1	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;ENSG00000167642|ENST00000301244|SPINT2;SPINT2|p.G70Afs*10|1|0.04|ENSG00000167642|chr19:38283725-38283725|G/-|frameshift_variant	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	603.3032836914062	2	603.302798	1204.59104	0.038085	2.2977E-05	0.93832	0.00056609	0.97641	0.00058907	603.3033649551019	32.729	0.21691	32.729	32.623	32.84	0					7	4	2	0	0	0	0.2538	1	12380	12380		72.879	34.126	1	109450			36443	6011	24915	25005	36892	36892	254				-0.003068467169896394
SIHFREAL	8	Unmodified	_SIHFREAL_					0	0	0			REV__ENST00000467157.1_1_3:122864388-122880365:+|nuORF	REV__ENST00000467157.1_1_3:122864388-122880365:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.76800537109375	2	486.766709	971.518865	0.63711	0.00031013	1.4854	0.00072302	2.1225	0.0010331	486.76750809625645	34.963	0.56173	34.963	34.832	35.393	0					35	16	4	0	0	0	0.54629	1	13505	13505		55.504	2.1528	1	1429000	+		36444	13116	24916	25006	36893	36893					0.03196606991616591
SIHGRPVTK	9	Unmodified	_SIHGRPVTK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A;FAM13A|p.E827K|1|0.28|ENSG00000138640|chr4:88739113-88739113|C/T|missense_variant	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.79345703125	2	497.793258	993.571963	0.18879	9.3979E-05	0.56974	0.00028361	0.75854	0.00037759	497.7935282208661	14.047	0.18812	14.047	13.96	14.148	0					15	9	2	0	0	0	0.27123	1	2831	2831		53.089	15.277	1	54696			36445	4274	24917	25007	36894	36894					0.0749198477428763
SIHGRPVTK	9	Unmodified	_SIHGRPVTK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A;FAM13A|p.E827K|1|0.28|ENSG00000138640|chr4:88739113-88739113|C/T|missense_variant	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.29522705078125	2	497.793258	993.571963	-1.1258	-0.00056041	1.5638	0.00077845	0.43802	0.00021804	497.79380126944267	14.058	0.15727	14.058	13.99	14.147	0					13	8	2	0	0	0	0.04067	1	2983	2983		98.582	16.341	1	72901			36446	4274	24917	25007	36895	36895					0.0749198477428763
SIHGRPVTK	9	Unmodified	_SIHGRPVTK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A;FAM13A|p.E827K|1|0.28|ENSG00000138640|chr4:88739113-88739113|C/T|missense_variant	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.1979675292969	3	332.197931	993.571963	0.54169	0.00017995	-0.7934	-0.00026357	-0.2517	-8.3616E-05	332.19771888255593	14.309	0.33805	14.309	14.201	14.539	0					17	7	3	0	0	0	0.44593	1	3674	3674		61.691	18.827	1	452140			36447	4274	24917	25007	36896	36896					0.0749198477428763
SIHGRPVTK	9	Unmodified	_SIHGRPVTK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A;FAM13A|p.E827K|1|0.28|ENSG00000138640|chr4:88739113-88739113|C/T|missense_variant	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.79302978515625	2	497.793258	993.571963	-0.71811	-0.00035747	0.67159	0.00033431	-0.046526	-2.316E-05	497.79364053517764	14.3	0.32001	14.3	14.103	14.423	0					10	6	3	0	0	0	0.070005	1	3524	3524		88.177	5.4265	1	182520			36448	4274	24917	25007	36897	36897					0.0749198477428763
SIHILLGRR	9	Unmodified	_SIHILLGRR_					0	0	0		ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	355.5621337890625	3	355.561092	1063.66145	3.6071	0.0012825	-0.7931	-0.000282	2.814	0.0010005	355.5608576433114	34.273	0.072426	34.273	34.229	34.301	0					5	3	2	0	0	0	0.51991	1	11546	11546		30.318	5.7985	1	82131			36449	4029	24918	25008	36898	36898					0.13216239453663547
SIHIYSDI	8	Unmodified	_SIHIYSDI_					0	0	0		ENST00000491277.1_1_1:214705434-214705560:-|nuORF	ENST00000491277.1_1_1:214705434-214705560:-|nuORF	ENST00000491277.1_1_1:214705434-214705560:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2430114746094	2	474.245275	946.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.248	1	29.248	28.748	29.748	0								0	0	0	1.7419	1	9211	9211		50.025	2.1089	1				36450	10070	24919	25009	36899	36899					0.0006179214351504925
SIHLGNKLSW	10	Unmodified	_SIHLGNKLSW_					0	0	0			REV__ENSG00000163935|ENST00000394752|SFMBT1	REV__ENSG00000163935|ENST00000394752|SFMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.8194580078125	2	577.819473	1153.62439	-0.067102	-3.8773E-05	0.082213	4.7504E-05	0.01511	8.7311E-06	577.8194097427559	30.484	0.34912	30.484	30.354	30.703	0					17	8	3	0	0	0	0.63019	1	10986	10986		32.812	18.675	1	408380	+		36451	15938	24920	25010	36900	36900					0.05372523117216588
SIHLLELNS	9	Unmodified	_SIHLLELNS_					0	0	0			REV__nc|ENSG00000204414|Q14406-4|CSHL1	REV__nc|ENSG00000204414|Q14406-4|CSHL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2857666015625	2	513.284931	1024.55531	0.012654	6.4953E-06	1.0781	0.00055338	1.0908	0.00055987	513.2852867698964	39.556	0.13431	39.556	39.499	39.633	0					9	5	2	0	0	0	0.44593	1	15059	15059		37.812	3.639	1	162920	+		36452	17485	24921	25011	36901	36901					0.044014390976599316
SIHPRGVTK	9	Unmodified	_SIHPRGVTK_					0	0	0			REV__TGFB2|p.N274Tfs*10|2|0.29|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	REV__TGFB2|p.N274Tfs*10|2|0.29|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7929992675781	2	497.793258	993.571963	0.17987	8.9539E-05	-0.18325	-9.1223E-05	-0.0033816	-1.6833E-06	497.7931710531779	14.124	0.18456	14.124	14.026	14.21	0					16	9	2	0	0	0	0.17854	1	2930	2930		64.207	2.0999	1	68338	+		36453	21636	24922	25012	36902	36902					0.0749198477428763
SIHQAKHE	8	Unmodified	_SIHQAKHE_					0	0	0			REV__TBC1D4|p.F159Sfs*16|1|0.14|ENSG00000136111|chr13:75481292-75481292|A/-|frameshift_variant	REV__TBC1D4|p.F159Sfs*16|1|0.14|ENSG00000136111|chr13:75481292-75481292|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2451171875	2	475.246141	948.477728	-0.11987	-5.697E-05	-1.9609	-0.00093192	-2.0808	-0.00098889	475.24499913958493	23.872	0.21644	23.872	23.762	23.979	0					6	4	2	0	0	0	0.53424	1	8295	8295		56.721	3.7844	1	134050	+		36454	14848	24923	25013	36903	36903					0.0014284595213212015
SIHSTFSL	8	Unmodified	_SIHSTFSL_					0	0	0		ENST00000391959.5_2_1:202549704-202549908:+|nuORF	ENST00000391959.5_2_1:202549704-202549908:+|nuORF	ENST00000391959.5_2_1:202549704-202549908:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.23223876953125	2	446.232168	890.449782	-0.15886	-7.0889E-05	0.046553	2.0774E-05	-0.11231	-5.0115E-05	446.23213676571163	40.504	0.20998	40.504	40.397	40.607	0					13	8	2	0	0	0	0.52345	1	15959	15959		57.811	5.5121	1	189230			36455	9139	24924	25014	36904	36904					0.0001752297204120623
SIHTAWLIL	9	Unmodified	_SIHTAWLIL_					0	0	0		ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.3071899414062	2	527.30821	1052.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.869	1	17.869	17.369	18.369	0								0	0	0	0.28996	1	4348	4348		37.159	0.71236	1				36456	6355	24925	25015	36905	36905					0.07766923719623264
SIIDATKK	8	Unmodified	_SIIDATKK_					0	0	0			REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.2630615234375	2	438.263468	874.512382	-0.39455	-0.00017291	-0.55154	-0.00024172	-0.94609	-0.00041464	438.2631194354582	26.878	0.16666	26.878	26.778	26.944	0					5	3	2	0	0	0	0.69548	1	9691	9691		34.173	3.8548	1	100600	+		36457	14688	24926	25016	36906	36906					0.07010669040232642
SIIETLRQK	9	Unmodified	_SIIETLRQK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.3271484375	2	544.327131	1086.63971	1.172	0.00063795	-0.57291	-0.00031185	0.59909	0.0003261	544.3267733410888	29.19	0.36987	29.19	29.089	29.459	0					33	13	4	0	0	0	0.01873	1	9165	9165		124.08	38.919	1	1466300			36458	1647	24927	25017	36907	36907					0.09985389914436382
SIIETLRQK	9	Unmodified	_SIIETLRQK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.32763671875	2	544.327131	1086.63971	0.36804	0.00020033	0.33853	0.00018427	0.70656	0.0003846	544.3272144007489	29.443	0.46091	29.443	29.351	29.812	0					37	11	5	0	0	0	0.021961	1	10502	10502		118.74	8.6232	1	8870200			36459	1647	24927	25017	36908	36908					0.09985389914436382
SIIETLRQK	9	Unmodified	_SIIETLRQK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.3271484375	2	544.327131	1086.63971	-0.20569	-0.00011196	0.71278	0.00038799	0.50709	0.00027602	544.3275209965525	29.222	0.18549	29.222	29.125	29.31	0					16	7	3	0	0	0	0.023928	1	9481	9481		115.49	27.74	1	342030			36460	1647	24927	25017	36909	36909					0.09985389914436382
SIIETLRQK	9	Unmodified	_SIIETLRQK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.3274536132812	2	544.327131	1086.63971	0.32549	0.00017717	0.39874	0.00021704	0.72423	0.00039422	544.3273352043224	29.454	0.29994	29.454	29.35	29.65	0					18	6	4	0	0	0	0.021961	1	10894	10894		118.74	17.142	1	2888000			36461	1647	24927	25017	36910	36910					0.09985389914436382
SIIGHPRH	8	Unmodified	_SIIGHPRH_					0	0	0		ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENST00000457622.1_1_6:46172676-46173294:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.75860595703125	2	458.759218	915.503883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.196	1	15.196	14.696	15.696	0								0	0	0	1.7419	1	3873	3873		26.796	1.3459	1				36462	9697	24928	25018	36911	36911					0.04275159914266169
SIIHCRSC	8	Unmodified	_SIIHCRSC_					0	0	0			REV__DDX56|p.R295C|1|0.14|ENSG00000136271|chr7:44571499-44571499|G/A|missense_variant	REV__DDX56|p.R295C|1|0.14|ENSG00000136271|chr7:44571499-44571499|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7176513671875	2	459.717847	917.421141	0.1485	6.8269E-05	-1.3201	-0.00060687	-1.1716	-0.0005386	459.7175716188294	15.35	0.1447	15.35	15.252	15.397	0					6	3	2	0	0	0	0.66372	1	3936	3936		38.806	0	1	67182	+		36463	12689	24929	25019	36912	36912					-0.04087241200397784
SIILRFERA	9	Unmodified	_SIILRFERA_					0	0	0		ENSG00000149256|ENST00000278550|TENM4;TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.88885498046875	3	368.888986	1103.64513	0.26489	9.7714E-05	-0.52483	-0.0001936	-0.25994	-9.5889E-05	368.88876327108704	27.279	0.36977	27.279	27.169	27.539	0					12	7	2	0	0	0	0.28897	1	9874	9874		51.193	3.2332	1	1809400			36464	4868	24930	25020	36913	36913					0.09745113496887825
SIIMLTLAGI	10	Unmodified	_SIIMLTLAGI_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.3137817382812	2	516.312103	1030.60965	1.527	0.00078839	1.9319	0.00099748	3.4589	0.0017859	516.3130634673859	21.879	0.46638	21.879	21.772	22.239	0					21	9	4	0	0	0	0.16018	1	7203	7203		84.916	9.8722	1	3733600	+		36465	17424	24931	25021	36914	36914					0.09557314924882121
SIIMLTLAGI	10	Unmodified	_SIIMLTLAGI_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.5450439453125	3	344.543828	1030.60965	3.0277	0.0010432	0.32817	0.00011307	3.3558	0.0011562	344.54400043098826	21.904	0.41736	21.904	21.755	22.173	0					16	8	4	0	0	0	0.51121	1	7197	7197		65.465	17.506	1	1034000	+		36466	17424	24931	25021	36915	36915					0.09557314924882121
SIINFMKGI	9	Oxidation (M)	_SIINFM(Oxidation (M))KGI_		SIINFM(1)KGI		SIINFM(46)KGI	0	0	1			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|54|3|sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|54|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.8610534667969	3	346.859927	1037.55795	3.0311	0.0010514	0.50885	0.0001765	3.54	0.0012279	346.8601015252612	20.369	0.76558	20.369	20.26	21.025	0					39	15	4	0	0	0	0.35021	1	6445	6445		45.972	45.972	1	9644500	+		36467	20815	24932	25022	36916	36916		744			0.040675712309621304
SIIQPGCFK	9	Unmodified	_SIIQPGCFK_					0	0	0		ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7652587890625	2	496.76532	991.516088	-0.69183	-0.00034368	-0.99491	-0.00049424	-1.6867	-0.00083791	496.76489092962885	36.388	0.16681	36.388	36.329	36.496	0					5	3	2	0	0	0	0.36892	1	14175	14175		44.377	4.319	1	94970			36468	6603	24933	25023	36917	36917					0.01999015542446614
SIISLDLFH	9	Unmodified	_SIISLDLFH_					0	0	0			REV__ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant	REV__ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7896728515625	2	522.78985	1043.56515	0.45237	0.0002365	0.22801	0.0001192	0.68038	0.0003557	522.7899132239146	33.752	0.24552	33.752	33.673	33.918	0					19	9	3	0	0	0	0.32741	1	11341	11341		47.916	5.0513	1	294140	+		36469	22311	24934	25024	36918	36918					0.045106271030590506
SIIVKRYGK	9	Unmodified	_SIIVKRYGK_					0	0	0			REV__ENSG00000005100|ENST00000225296|DHX33	REV__ENSG00000005100|ENST00000225296|DHX33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.2257995605469	3	355.225598	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.901	1	18.901	18.401	19.401	0								0	0	0	0.31838	1	5883	5883		31.53	6.4038	1		+		36470	12833	24935	25025	36919	36919					0.12614301502276248
SIKDCLKTI	9	Carbamidomethyl (C)	_SIKDC(Carbamidomethyl (C))LKTI_	SIKDC(1)LKTI		SIKDC(53)LKTI		0	1	0			REV__ENSG00000186532|ENST00000305513|SMYD4	REV__ENSG00000186532|ENST00000305513|SMYD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.87042236328125	3	359.870603	1076.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.051	1	16.051	15.551	16.551	0								0	0	0	0.18645	1	4366	4366		52.937	6.9645	1		+		36471	17082	24936	25026	36920	36920	606				0.05474938914107952
SIKETKRI	8	Unmodified	_SIKETKRI_					0	0	0			REV__ENST00000557868.1_1_15:48449979-48451083:-|nuORF	REV__ENST00000557868.1_1_15:48449979-48451083:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.80316162109375	2	487.803291	973.59203	-0.36398	-0.00017755	0.064248	3.134E-05	-0.29973	-0.00014621	487.8033367359499	21.863	0.34846	21.863	21.726	22.075	0					26	8	4	0	0	0	0.29212	1	6998	6998		84.916	0	1	4356600	+		36472	20264	24937	25027	36921	36921					0.10417735714224818
SIKEVDEAK	9	Unmodified	_SIKEVDEAK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;ENST00000513666.5_1_5:96073558-96090478:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.77423095703125	2	509.774396	1017.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.623	1	17.623	17.123	18.123	0								0	0	0	0.22075	1	4239	4239		47.96	7.1814	1				36473	5038	24938	25028	36922	36922					0.026174289981327092
SIKINQKN	8	Unmodified	_SIKINQKN_					0	0	0		tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7791748046875	2	472.779816	943.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.545	1	18.545	18.045	19.045	0								0	0	0	1.7419	1	5710	5710		42.396	5.237	1				36474	22763	24939	25029	36923	36923					0.07104876163089102
SIKISKVVQ	9	Unmodified	_SIKISKVVQ_					0	0	0			REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.5499572753906	3	334.54997	1000.62808	0.37201	0.00012445	-0.50944	-0.00017043	-0.13744	-4.598E-05	334.5497844610087	16.006	0.090259	16.006	15.955	16.045	0					8	3	3	0	0	0	0.27249	1	3567	3567		43.651	0	1	288250	+		36475	20062	24940	25030	36924	36924					0.12779192891082403
SIKISKVVQ	9	Unmodified	_SIKISKVVQ_					0	0	0			REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.5499572753906	3	334.54997	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.067	1	16.067	15.567	16.567	0								0	0	0	0.28666	1	3730	3730		30.569	0	1		+		36476	20062	24940	25030	36925	36925					0.12779192891082403
SIKLYDNI	8	Unmodified	_SIKLYDNI_					0	0	0			REV__ENST00000395514.5_1_14:55309440-55309725:-|nuORF	REV__ENST00000395514.5_1_14:55309440-55309725:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.268798828125	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.932	1	29.932	29.432	30.432	0								0	0	0	1.7419	1	10741	10741		30.504	0	1		+		36477	18880	24941	25031	36926	36926					0.039266516946554475
SIKRSRSR	8	Unmodified	_SIKRSRSR_					0	0	0			REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2994384765625	2	495.301781	988.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.513	1	15.513	15.013	16.013	0								0	0	0	1.7419	1	3498	3498		56.721	3.7844	1		+		36478	16717	24942	25032	36927	36927					0.09425905380089716
SIKSTKMLIHP	11	Unmodified	_SIKSTKMLIHP_					0	0	0		ENSG00000132855|ENST00000371129|ANGPTL3	ENSG00000132855|ENST00000371129|ANGPTL3	ENSG00000132855|ENST00000371129|ANGPTL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	627.8652954101562	2	627.865566	1253.71658	1.286	0.00080746	-0.92713	-0.00058211	0.3589	0.00022534	627.8647788604839	36.798	0.34991	36.798	36.625	36.975	0					21	9	3	0	0	0	0.69004	1	13960	13960		25.574	5.5773	1	90112			36479	3822	24943	25033	36928	36928					0.0998686513926259
SIKVTLPGR	9	Unmodified	_SIKVTLPGR_					0	0	0		ENST00000518462.1_1_7:150066562-150066703:+|nuORF	ENST00000518462.1_1_7:150066562-150066703:+|nuORF	ENST00000518462.1_1_7:150066562-150066703:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.20623779296875	3	324.206315	969.597115	0.55837	0.00018103	-0.5902	-0.00019135	-0.031828	-1.0319E-05	324.2060916334085	24.436	0.26672	24.436	24.326	24.593	0					12	5	3	0	0	0	0.5741	1	8564	8564		25.126	1.6033	1	1073800			36480	10278	24944	25034	36929	36929					0.11110039576851705
SIKVVDDYTIL	11	Unmodified	_SIKVVDDYTIL_					0	0	0			REV__ENST00000547020.1_1_12:53878838-53879309:-|nuORF	REV__ENST00000547020.1_1_12:53878838-53879309:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.5712585449219	3	422.571099	1264.69147	0.99676	0.0004212	-0.43517	-0.00018389	0.56159	0.00023731	422.5708205771956	36.235	0.40837	36.235	36.134	36.542	0					19	11	3	0	0	0	0.76918	1	13650	13650		21.032	21.032	1	286520	+		36481	15036	24945	25035	36930	36930					0.0697108881765871
SILEKGFIAK	10	Unmodified	_SILEKGFIAK_					0	0	0		NEK1|p.K337Nfs*13|1|0.37|ENSG00000137601|chr4:169576937-169576937|T/-|frameshift_variant;ENST00000509912.5_1_4:170476851-170520268:-|nuORF;nc|ENSG00000137601|Q96PY6-5|NEK1;NEK1|p.I605Sfs*4|1|0.42|ENSG00000137601|chr4:169507729-169507729|T/-|frameshift_variant;NEK1|p.V637Cfs*34|1|0.31|ENSG00000137601|chr4:169507052-169507052|T/-|frameshift_variant;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1	NEK1|p.K337Nfs*13|1|0.37|ENSG00000137601|chr4:169576937-169576937|T/-|frameshift_variant	NEK1|p.K337Nfs*13|1|0.37|ENSG00000137601|chr4:169576937-169576937|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3352661132812	2	553.334424	1104.6543	0.88131	0.00048766	0.63214	0.00034978	1.5134	0.00083744	553.3346093306146	31.844	0.26584	31.844	31.718	31.984	0					9	5	3	0	0	0	0.12383	1	11951	11951		91.265	11.553	1	212060			36482	4178	24946	25036	36931	36931					0.10615462062582992
SILGPGNIKK	10	Unmodified	_SILGPGNIKK_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;USP8|p.R138Kfs*14|1|0.27|ENSG00000138592|chr15:50459070-50459071|-/A|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.8187255859375	2	513.818941	1025.62333	0.018333	9.4198E-06	-0.27765	-0.00014266	-0.25932	-0.00013324	513.8189485210788	24.739	0.30599	24.739	24.519	24.825	0					17	7	4	0	0	0	0.39827	1	8337	8337		56.434	13.57	1	401910			36483	4266	24947	25037	36932	36932					0.11154308748336916
SILGPHFF	8	Unmodified	_SILGPHFF_					0	0	0			REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7445983886719	2	459.247621	916.480688	0.80485	0.00036963	4.3889	0.0020156	5.1938	0.0023852	459.24970238948157	22.438	0.54354	22.438	22.031	22.575	0					20	12	3	0	0	0	0.66238	1	7257	7257		39.021	1.21	1	1747200	+		36484	21584	24948	25038	36933	36933					0.019107210769448102
SILGTPLSK	9	Unmodified	_SILGTPLSK_					0	0	0		ENST00000566338.5_1_15:31233675-31240771:-|nuORF;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant;ENSG00000166912|ENST00000435680|MTMR10	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.27899169921875	2	458.279118	914.543683	0.78515	0.00035982	-0.71046	-0.00032559	0.074689	3.4228E-05	458.2788077496546	34.375	0.28812	34.375	34.257	34.545	0					13	7	2	0	0	0	0.22837	1	12790	12790		58.23	2.7257	1	821020			36485	5945	24949	25039	36934	36934					0.08299242074326685
SILGTPLSK	9	Unmodified	_SILGTPLSK_					0	0	0		ENST00000566338.5_1_15:31233675-31240771:-|nuORF;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant;ENSG00000166912|ENST00000435680|MTMR10	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2790222167969	2	458.279118	914.543683	-0.98525	-0.00045152	0.1051	4.8166E-05	-0.88015	-0.00040335	458.27913937741835	34.17	0.27885	34.17	34.059	34.337	0					21	12	2	0	0	0	0.3269	1	11502	11502		47.96	1.9873	1	267170			36486	5945	24949	25039	36935	36935					0.08299242074326685
SILGTPLSK	9	Unmodified	_SILGTPLSK_					0	0	0		ENST00000566338.5_1_15:31233675-31240771:-|nuORF;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant;ENSG00000166912|ENST00000435680|MTMR10	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2790222167969	2	458.279118	914.543683	-0.43979	-0.00020155	0.34863	0.00015977	-0.091158	-4.1776E-05	458.27923673074736	34.302	0.2636	34.302	34.196	34.46	0					11	5	3	0	0	0	0.25761	1	13144	13144		54.722	3.5297	1	290130			36487	5945	24949	25039	36936	36936					0.08299242074326685
SILHNLSH	8	Unmodified	_SILHNLSH_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7517395019531	2	460.751059	919.487565	2.5428	0.0011716	-1.182	-0.00054462	1.3608	0.00062697	460.75056389739564	17.318	0.35394	17.318	17.209	17.563	0					12	7	3	0	0	0	0.68432	1	4988	4988		35.618	0	1	342900			36488	6450	24950	25040	36937	36937					0.024600339575158614
SILHYAIM	8	Unmodified	_SILHYAIM_					0	0	0			REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2525939941406	2	474.254588	946.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.552	1	17.552	17.052	18.052	0								0	0	0	1.7419	1	4207	4207		28.254	3.7351	1		+		36489	21905	24951	25041	36938	36938					0.019236305137269483
SILKESKYK	9	Unmodified	_SILKESKYK_					0	0	0		nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-2|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8	nc|ENSG00000074603|Q6V1X1-4|DPP8	nc|ENSG00000074603|Q6V1X1-4|DPP8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.3230590820312	2	548.324057	1094.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.072	1	19.072	18.572	19.572	0								0	0	0	0.22075	1	4864	4864		47.96	21.267	1				36490	1527	24952	25042	36939	36939					0.09002871682878322
SILKHLSAK	9	Unmodified	_SILKHLSAK_					0	0	0		nc|ENSG00000109118|Q96QT6-4|PHF12;ENST00000582655.5_1_17:27237828-27251299:-|nuORF;nc|ENSG00000109118|Q96QT6-2|PHF12;ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant;ENSG00000109118|ENST00000332830|PHF12	nc|ENSG00000109118|Q96QT6-4|PHF12	nc|ENSG00000109118|Q96QT6-4|PHF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.87811279296875	3	332.878198	995.612765	0.52157	0.00017362	-0.3533	-0.00011761	0.16827	5.6013E-05	332.8779805045166	21.69	0.22691	21.69	21.596	21.823	0					10	5	2	0	0	0	0.53064	1	6943	6943		43.651	7.204	1	611900			36491	2568	24953	25043	36940	36940					0.114783260938907
SILKHLSAK	9	Unmodified	_SILKHLSAK_					0	0	0		nc|ENSG00000109118|Q96QT6-4|PHF12;ENST00000582655.5_1_17:27237828-27251299:-|nuORF;nc|ENSG00000109118|Q96QT6-2|PHF12;ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant;ENSG00000109118|ENST00000332830|PHF12	nc|ENSG00000109118|Q96QT6-4|PHF12	nc|ENSG00000109118|Q96QT6-4|PHF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.2123718261719	3	332.878198	995.612765	0.54051	0.00017992	-0.45081	-0.00015007	0.089693	2.9857E-05	332.8780104374977	21.6	0.21679	21.6	21.492	21.708	0					11	4	3	0	0	0	0.16806	1	7178	7178		101.46	32.614	1	410620			36492	2568	24953	25043	36941	36941					0.114783260938907
SILLDTLYE	9	Unmodified	_SILLDTLYE_					0	0	0		ENSG00000171060|ENST00000304519|C8orf74	ENSG00000171060|ENST00000304519|C8orf74	ENSG00000171060|ENST00000304519|C8orf74	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.788330078125	2	533.786973	1065.55939	0.1478	7.8896E-05	2.2758	0.0012148	2.4236	0.0012937	533.788047721675	13.301	0.24	13.301	13.216	13.456	0					11	6	3	0	0	0	0.53083	1	3006	3006		29.15	1.2673	1	509790			36493	6276	24954	25044	36942	36942					0.02923483800714166
SILNLVSPL	9	Unmodified	_SILNLVSPL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.294921875	2	478.294768	954.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.631	1	39.631	39.131	40.131	0								0	0	0	0.21054	1	14122	14122		49.442	1.7842	1				36494	3508	24955	25045	36943	36943					0.09587815108409359
SILNNPIVK	9	Unmodified	_SILNNPIVK_					0	0	0		ENSG00000162664|ENST00000340281|ZNF326;ZNF326|p.A460V|1|0.18|ENSG00000162664|chr1:90022323-90022323|C/T|missense_variant;nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF	ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.3052673339844	2	499.305667	996.596781	0.29324	0.00014642	-0.28	-0.00013981	0.013241	6.6113E-06	499.30551338562424	36.801	0.19028	36.801	36.688	36.878	0					17	10	2	0	0	0	0.46194	1	12051	12051		37.159	2.9866	1	83039			36495	5485	24956	25046	36944	36944					0.09834619856997051
SILNNPIVK	9	Unmodified	_SILNNPIVK_					0	0	0		ENSG00000162664|ENST00000340281|ZNF326;ZNF326|p.A460V|1|0.18|ENSG00000162664|chr1:90022323-90022323|C/T|missense_variant;nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF	ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.30548095703125	2	499.305667	996.596781	0.67478	0.00033692	-0.87057	-0.00043468	-0.19579	-9.776E-05	499.30521501949124	37.061	0.43804	37.061	36.864	37.302	0					27	12	3	0	0	0	0.040209	1	14020	14020		104.06	38.591	1	343840			36496	5485	24956	25046	36945	36945					0.09834619856997051
SILNNPIVK	9	Unmodified	_SILNNPIVK_					0	0	0		ENSG00000162664|ENST00000340281|ZNF326;ZNF326|p.A460V|1|0.18|ENSG00000162664|chr1:90022323-90022323|C/T|missense_variant;nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF	ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.30535888671875	2	499.305667	996.596781	-0.72825	-0.00036362	0.35134	0.00017543	-0.37691	-0.00018819	499.3058757659676	36.982	0.2056	36.982	36.88	37.086	0					10	4	3	0	0	0	0.099758	1	14431	14431		82.75	20.643	1	119030			36497	5485	24956	25046	36946	36946					0.09834619856997051
SILPAALGK	9	Unmodified	_SILPAALGK_					0	0	0		ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-3|PRXL2B;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000477045.1_1_1:2518532-2519982:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF	ENSG00000157870|ENST00000419916|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2762756347656	2	435.276378	868.538203	-0.52876	-0.00023016	-0.1583	-6.8904E-05	-0.68706	-0.00029906	435.2761864312073	37.247	0.16565	37.247	37.12	37.285	0					6	3	2	0	0	0	0.47038	1	14551	14551		35.618	10.044	1	53604			36498	5234	24957	25047	36947	36947					0.09867563282523406
SILPAIFQK	9	Unmodified	_SILPAIFQK_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8110046386719	2	508.810585	1015.60662	-0.022149	-1.127E-05	-0.19892	-0.00010121	-0.22107	-0.00011248	508.81043766959544	47.823	0.37269	47.823	47.629	48.002	0					38	23	2	0	0	0	0.33044	1	17462	17462		47.657	8.4045	1	297120			36499	5907	24958	25048	36948	36948					0.09943807862362064
SILPAIFQK	9	Unmodified	_SILPAIFQK_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8113708496094	2	508.810585	1015.60662	1.1547	0.00058754	0.088068	4.481E-05	1.2428	0.00063235	508.81059740350537	47.765	0.47718	47.765	47.544	48.021	0					61	28	3	0	0	0	0.33044	1	18164	18164		47.657	12.505	1	468120			36500	5907	24958	25048	36949	36949					0.09943807862362064
SILPAIFQK	9	Unmodified	_SILPAIFQK_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.8109436035156	2	508.810585	1015.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.567	1	47.567	47.067	48.067	0								0	0	0	0.3304	1	15908	15908		29.15	0	1				36501	5907	24958	25048	36950	36950					0.09943807862362064
SILPASRRV	9	Unmodified	_SILPASRRV_					0	0	0			REV__ENST00000258105.7_1_2:74699535-74699574:-|nuORF	REV__ENST00000258105.7_1_2:74699535-74699574:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.8087158203125	2	499.808908	997.603263	0.33302	0.00016644	-0.70044	-0.00035009	-0.36743	-0.00018364	499.8086137804178	25.342	0.13422	25.342	25.265	25.399	0					9	4	3	0	0	0	0.53064	1	7609	7609		21.96	15.224	1	116430	+		36502	17993	24959	25049	36951	36951					0.10436557808372982
SILRNPVTNK	10	Unmodified	_SILRNPVTNK_					0	0	0		ENST00000558059.5_1_15:101827046-101835071:-|nuORF;ENST00000558036.5_1_15:101827046-101835383:-|nuORF;ENSG00000131876|ENST00000254193|SNRPA1	ENST00000558059.5_1_15:101827046-101835071:-|nuORF	ENST00000558059.5_1_15:101827046-101835071:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.3384399414062	2	571.33803	1140.66151	-0.033575	-1.9183E-05	0.32839	0.00018762	0.29482	0.00016844	571.3385276157361	26.572	0.48069	26.572	26.235	26.715	0					29	11	3	0	0	0	0.14893	1	9197	9197		86.882	24.774	1	528940			36503	3748	24960	25050	36952	36952					0.09680194662996655
SILRNPVTNK	10	Unmodified	_SILRNPVTNK_					0	0	0		ENST00000558059.5_1_15:101827046-101835071:-|nuORF;ENST00000558036.5_1_15:101827046-101835383:-|nuORF;ENSG00000131876|ENST00000254193|SNRPA1	ENST00000558059.5_1_15:101827046-101835071:-|nuORF	ENST00000558059.5_1_15:101827046-101835071:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.33837890625	2	571.33803	1140.66151	0.088632	5.0639E-05	0.42611	0.00024345	0.51474	0.00029409	571.3383139972141	26.292	0.35668	26.292	26.086	26.443	0					20	11	3	0	0	0	0.39647	1	8252	8252		56.632	1.8559	1	105680			36504	3748	24960	25050	36953	36953					0.09680194662996655
SILRNPVTNK	10	Unmodified	_SILRNPVTNK_					0	0	0		ENST00000558059.5_1_15:101827046-101835071:-|nuORF;ENST00000558036.5_1_15:101827046-101835383:-|nuORF;ENSG00000131876|ENST00000254193|SNRPA1	ENST00000558059.5_1_15:101827046-101835071:-|nuORF	ENST00000558059.5_1_15:101827046-101835071:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.2276611328125	3	381.227779	1140.66151	0.63403	0.00024171	-0.96544	-0.00036805	-0.33142	-0.00012635	381.22746067953614	26.544	0.57127	26.544	26.134	26.705	0					32	11	4	0	0	0	0.59277	1	9382	9382		55.084	35.053	1	779840			36505	3748	24960	25050	36954	36954					0.09680194662996655
SILSGGTPK	9	Unmodified	_SILSGGTPK_					0	0	0		nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C	nc|ENSG00000158402|P30307-2|CDC25C	nc|ENSG00000158402|P30307-2|CDC25C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2475280761719	2	430.247818	858.481082	-0.87195	-0.00037515	0.43574	0.00018748	-0.43621	-0.00018768	430.2479644477615	25.336	0.2031	25.336	25.253	25.456	0					13	7	3	0	0	0	0.15163	1	7854	7854		67.494	10.773	1	168650			36506	5258	24961	25051	36955	36955					0.04618096006151973
SILSGGTPK	9	Unmodified	_SILSGGTPK_					0	0	0		nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C	nc|ENSG00000158402|P30307-2|CDC25C	nc|ENSG00000158402|P30307-2|CDC25C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.247802734375	2	430.247818	858.481082	0.96578	0.00041552	-2.709	-0.0011656	-1.7433	-0.00075004	430.24730908865683	25.526	0.74408	25.526	25.239	25.983	0					29	13	3	0	0	0	0.037924	1	9093	9093		101.25	19.012	1	1280400			36507	5258	24961	25051	36956	36956					0.04618096006151973
SILSGGTPK	9	Unmodified	_SILSGGTPK_					0	0	0		nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C	nc|ENSG00000158402|P30307-2|CDC25C	nc|ENSG00000158402|P30307-2|CDC25C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.24786376953125	2	430.247818	858.481082	-0.44948	-0.00019339	0.15869	6.8275E-05	-0.29079	-0.00012511	430.24781061808113	25.54	0.36603	25.54	25.414	25.78	0					14	6	3	0	0	0	0.18416	1	8939	8939		63.534	4.7519	1	353720			36508	5258	24961	25051	36957	36957					0.04618096006151973
SILSGLFPPSG	11	Unmodified	_SILSGLFPPSG_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7943725585938	2	537.795132	1073.57571	-1.437	-0.00077279	0.20006	0.00010759	-1.2369	-0.0006652	537.7949687552766	15.668	0.082845	15.668	15.61	15.693	0					5	3	2	0	0	0	0.45317	1	3566	3566		47.657	0	1	61581			36509	9	24962	25052	36958	36958					0.0418660975747116
SILTPHPRLA	10	Unmodified	_SILTPHPRLA_					0	0	0			REV__ENST00000264039.6_1_2:241407315-241407444:+|nuORF	REV__ENST00000264039.6_1_2:241407315-241407444:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8888244628906	3	368.888986	1103.64513	-0.21862	-8.0646E-05	-0.083046	-3.0635E-05	-0.30167	-0.00011128	368.8889730279096	27.264	0.27044	27.264	27.154	27.424	0					12	5	3	0	0	0	0.58189	1	9726	9726		36.447	5.8779	1	625140	+		36510	18055	24963	25053	36959	36959					0.09745113496887825
SILTRKKPA	9	Unmodified	_SILTRKKPA_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.5536804199219	3	338.553715	1012.63931	0.23056	7.8055E-05	-0.403	-0.00013644	-0.17244	-5.838E-05	338.55356589314414	18.86	0.32826	18.86	18.611	18.939	0					21	9	3	0	0	0	0.61124	1	4759	4759		24.519	7.0512	1	291520			36511	7058	24964	25054	36960	36960					0.1335001498522388
SILTTHTTL	9	Unmodified	_SILTTHTTL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENST00000559655.1_1_15:35141948-35142251:-|nuORF;TUBA1B|p.H197Q|1|0.17|ENSG00000123416|chr12:49128723-49128723|G/T|missense_variant;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7796630859375	2	493.779482	985.544411	-0.74955	-0.00037011	0.65961	0.0003257	-0.089932	-4.4407E-05	493.7799971966824	35.21	0.22951	35.21	35.123	35.352	0					15	6	3	0	0	0	0.098791	1	13634	13634		79.713	0	1	438370			36512	3319;10430;7961	24965	25055	36961	36961					0.05106036723384477
SILVVAGSGG	10	Unmodified	_SILVVAGSGG_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2478332519531	2	430.247818	858.481082	0.18923	8.1416E-05	0.037094	1.596E-05	0.22632	9.7375E-05	430.24783652254365	25.418	0.2235	25.418	25.31	25.533	0					7	5	2	0	0	0	0.55603	1	8083	8083		39.253	0	1	52445			36513	6357	24966	25056	36962	36962					0.046180960061633414
SIMDPNQNVK	10	Unmodified	_SIMDPNQNVK_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.7855224609375	2	573.284605	1144.55466	1.0688	0.00061273	-1.6408	-0.00094066	-0.57202	-0.00032793	573.2838946745634	26.382	0.25106	26.382	26.28	26.531	0					12	8	2	0	0	0	0.38194	1	8035	8035		58.23	13.208	1	48706			36514	2949	24967	25057	36963	36963					-0.011837236137125728
SIMDPNQNVK	10	Unmodified	_SIMDPNQNVK_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.2849731445312	2	573.284605	1144.55466	-0.12485	-7.1577E-05	0.69077	0.00039601	0.56591	0.00032443	573.2850470129137	26.649	0.32019	26.649	26.44	26.76	0					18	7	3	0	0	0	0.536	1	9235	9235		41.427	3.6151	1	331610			36515	2949	24967	25057	36964	36964					-0.011837236137125728
SIMDPNQNVK	10	Unmodified	_SIMDPNQNVK_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.2843017578125	2	573.284605	1144.55466	2.0104	0.0011526	-1.9084	-0.0010941	0.10204	5.85E-05	573.283661423515	26.69	0.41838	26.69	26.41	26.828	0					24	8	4	0	0	0	0.44292	1	9587	9587		51.528	14.02	1	526850			36516	2949	24967	25057	36965	36965					-0.011837236137125728
SIMDYKRE	8	Unmodified	_SIMDYKRE_					0	0	0			REV__RIT2|p.K198Qfs*60|1|0.4|ENSG00000152214|chr18:42743555-42743559|TTCTC/-|frameshift_variant	REV__RIT2|p.K198Qfs*60|1|0.4|ENSG00000152214|chr18:42743555-42743559|TTCTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.2544555664062	2	521.255317	1040.49608	-1.3285	-0.0006925	1.4374	0.00074926	0.10888	5.6753E-05	521.2562577042102	33.911	0.73212	33.911	33.799	34.531	0					41	22	3	0	0	0	0.6088	1	12114	12114		47.657	5.2612	1	404880	+		36517	21468	24968	25058	36966	36966					-0.02254780188195582
SIMEKKMKTK	10	Unmodified	_SIMEKKMKTK_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	612.3458862304688	2	612.346151	1222.67775	0.1621	9.9262E-05	-0.7406	-0.0004535	-0.5785	-0.00035424	612.345967792278	15.708	0.051891	15.708	15.683	15.735	0					4	2	2	0	0	0	0.50639	1	3469	3469		47.96	0	1	40312			36518	2894	24969	25059	36967	36967					0.07531816513210288
SIMEKKMKTK	10	Unmodified	_SIMEKKMKTK_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.5662841796875	3	408.566526	1222.67775	0.99091	0.00040485	-1.8336	-0.00074914	-0.84266	-0.00034428	408.56594263016984	16.025	0.22581	16.025	15.937	16.163	0					16	5	5	0	0	0	0.27406	1	4255	4255		70.399	10.468	1	1151600			36519	2894	24969	25059	36968	36968					0.07531816513210288
SIMEKKMKTK	10	Unmodified	_SIMEKKMKTK_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.566650390625	3	408.566526	1222.67775	-0.5307	-0.00021683	0.48188	0.00019688	-0.048824	-1.9948E-05	408.5668650378441	15.956	0.16694	15.956	15.896	16.063	0					7	3	3	0	0	0	0.1998	1	4333	4333		79.489	19.558	1	520580			36520	2894	24969	25059	36969	36969					0.07531816513210288
SIMELPPQL	9	Unmodified	_SIMELPPQL_					0	0	0		ENST00000238714.7_1_2:60983626-60987372:+|nuORF	ENST00000238714.7_1_2:60983626-60987372:+|nuORF	ENST00000238714.7_1_2:60983626-60987372:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.189208984375	3	343.187932	1026.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.154	1	19.154	18.654	19.654	0								0	0	0	0.28996	1	6006	6006		71.877	34.718	1				36521	8212	24970	25060	36970	36970					0.02975864994073163
SIMGHFLL	8	Unmodified	_SIMGHFLL_					0	0	0			REV__ENST00000425395.5_1_2:175711684-175816905:-|nuORF	REV__ENST00000425395.5_1_2:175711684-175816905:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.24884033203125	2	459.249306	916.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.317	1	43.317	42.817	43.817	0								0	0	0	1.7419	1	17330	17330		49.211	2.4444	1		+		36522	19108	24971	25061	36971	36971					0.0224764785930347
SIMKWNRER	9	Unmodified	_SIMKWNRER_					0	0	0		ENST00000511584.2_1_19:19627047-19637070:+|nuORF;ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.2170715332031	3	407.216997	1218.62916	0.62449	0.0002543	-0.46896	-0.00019097	0.15554	6.3337E-05	407.2169076666161	22.575	0.13659	22.575	22.532	22.668	0					7	4	2	0	0	0	0.50858	1	6425	6425		31.53	2.9531	1	47491			36523	7120	24972	25062	36972	36972					0.02859083988346356
SIMKWNRER	9	Unmodified	_SIMKWNRER_					0	0	0		ENST00000511584.2_1_19:19627047-19637070:+|nuORF;ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.217041015625	3	407.216997	1218.62916	0.048697	1.983E-05	-0.58535	-0.00023836	-0.53665	-0.00021853	407.2169229462081	22.768	1.2707	22.768	22.66	23.931	0					61	25	3	0	0	0	0.28504	1	7745	7745		51.528	10.448	1	2115900			36524	7120	24972	25062	36973	36973					0.02859083988346356
SIMKWNRER	9	Unmodified	_SIMKWNRER_					0	0	0		ENST00000511584.2_1_19:19627047-19637070:+|nuORF;ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.55126953125	3	407.216997	1218.62916	-0.55818	-0.0002273	0.112	4.5609E-05	-0.44618	-0.00018169	407.21714125872546	22.797	2.542	22.797	22.688	25.23	0					97	51	3	0	0	0	0.2546	2	7622	7622;7795		55.084	6.4175	1	7131200			36525	7120	24972	25062	36974;36975	36974					0.02859083988346356
SIMSSHVMK	9	Unmodified	_SIMSSHVMK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.5052185058594	3	340.505267	1018.49397	-0.71766	-0.00024437	0.75352	0.00025658	0.035863	1.2211E-05	340.50549694502035	23.249	0.10047	23.249	23.211	23.311	0					6	3	2	0	0	0	0.53064	1	6964	6964		29.17	0	1	201670			36526	5298	24973	25063	36976	36976					-0.014535321976154592
SIMSSHVMK	9	Unmodified	_SIMSSHVMK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2539367675781	2	510.254262	1018.49397	-0.3099	-0.00015813	-0.37336	-0.00019051	-0.68326	-0.00034864	510.254226518577	23.271	0.22649	23.271	23.197	23.424	0					14	7	3	0	0	0	0.054723	1	6961	6961		98.629	39.847	1	741570			36527	5298	24973	25063	36977	36977					-0.014535321976154592
SIMSSHVMK	9	Unmodified	_SIMSSHVMK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.254150390625	2	510.254262	1018.49397	-0.42195	-0.0002153	-0.16638	-8.4897E-05	-0.58833	-0.0003002	510.25451365143886	23.487	0.46842	23.487	23.378	23.847	0					25	9	5	0	0	0	0.012936	1	8085	8085		131.03	67.498	1	4385000			36528	5298	24973	25063	36978	36978					-0.014535321976154592
SIMSSHVMK	9	Unmodified	_SIMSSHVMK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.50537109375	3	340.505267	1018.49397	3.0212	0.0010287	-3.3801	-0.0011509	-0.35885	-0.00012219	340.50425483756845	23.459	0.41049	23.459	23.352	23.763	0					17	8	4	0	0	0	0.24334	1	7968	7968		56.434	5.2411	1	1898900			36529	5298	24973	25063	36979	36979					-0.014535321976154592
SINDQKRRHL	10	Unmodified	_SINDQKRRHL_					0	0	0			REV__nc|ENSG00000168137|Q9C0A6-2|SETD5	REV__nc|ENSG00000168137|Q9C0A6-2|SETD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2411193847656	3	422.905698	1265.69527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.764	1	32.764	32.264	33.264	0								0	0	0	0.4201	1	12481	12481		20.837	0	1		+		36530	16243	24974	25064	36980	36980					0.07304616154760879
SINKDALL	8	Unmodified	_SINKDALL_					0	0	0			REV__nc|ENSG00000175518|Q8IYU4-2|UBQLNL	REV__nc|ENSG00000175518|Q8IYU4-2|UBQLNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2555847167969	2	437.255643	872.496732	0.62518	0.00027336	-1.4831	-0.0006485	-0.85793	-0.00037513	437.2549282916492	31.903	0.24866	31.903	31.822	32.07	0					9	6	2	0	0	0	0.43813	1	11673	11673		66.429	2.222	1	213740	+		36531	16618	24975	25065	36981	36981					0.055383825231729134
SINLTLTK	8	Unmodified	_SINLTLTK_					0	0	0		nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.2711486816406	2	445.271293	888.528032	-0.027691	-1.233E-05	0.23506	0.00010466	0.20737	9.2334E-05	445.27150698735016	31.893	0.13388	31.893	31.794	31.928	0					6	3	2	0	0	0	0.58597	1	11659	11659		51.335	0	1	39264			36532	7435	24976	25066	36982	36982					0.07930955557287689
SINPYAGGL	9	Unmodified	_SINPYAGGL_					0	0	0			REV__nc|ENSG00000069869|P46934-3|NEDD4	REV__nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.23187255859375	2	446.232168	890.449782	-0.44443	-0.00019832	0.14112	6.2973E-05	-0.30331	-0.00013535	446.23218924279723	40.316	1.0767	40.316	39.926	41.002	0					60	22	4	0	0	0	0.2873	1	16204	16204		51.335	1.8939	1	1740200	+		36533	20935	24977	25067	36983	36983					0.00017522972063943598
SINRKNER	8	Unmodified	_SINRKNER_					0	0	0			REV__ENSG00000203952|ENST00000695460|CCDC160	REV__ENSG00000203952|ENST00000695460|CCDC160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.5233154296875	3	339.524707	1015.55229	-0.70485	-0.00023931	-3.227	-0.0010956	-3.9318	-0.001335	339.52361539944104	24.348	0.09808	24.348	24.284	24.382	0					6	3	2	0	0	0	0.70598	1	7447	7447		32.812	2.3088	1	79042	+		36534	17461	24978	25068	36984	36984					0.04513608763511456
SINRTLFIQ	9	Unmodified	_SINRTLFIQ_					0	0	0		ENST00000265277.9_1_10:112724403-112724514:+|nuORF	ENST00000265277.9_1_10:112724403-112724514:+|nuORF	ENST00000265277.9_1_10:112724403-112724514:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.3146362304688	2	546.314023	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.156	1	32.156	31.656	32.656	0								0	0	0	0.31838	1	10380	10380		31.53	1.0262	1				36535	8347	24979	25069	36985	36985					0.07181120742939129
SINSGIRSLRH	11	Unmodified	_SINSGIRSLRH_					0	0	0		ENSG00000177324|ENST00000380033|BEND2	ENSG00000177324|ENST00000380033|BEND2	ENSG00000177324|ENST00000380033|BEND2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.23486328125	3	413.902065	1238.68437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.128	1	31.128	30.628	31.628	0								0	0	0	0.45674	1	11300	11300		22.562	2.5311	1				36536	6659	24980	25070	36986	36986					0.07457213780458005
SINVVRHLG	9	Unmodified	_SINVVRHLG_					0	0	0		nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1	nc|ENSG00000021826|P31327-2|CPS1	nc|ENSG00000021826|P31327-2|CPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.1976013183594	3	332.197931	993.571963	-0.70273	-0.00023345	0.13589	4.5142E-05	-0.56684	-0.0001883	332.1980514975595	14.08	0.13584	14.08	13.985	14.121	0					10	7	2	0	0	0	0.61124	1	2994	2994		14.865	0	1	107920			36537	1108	24981	25071	36987	36987					0.0749198477428763
SIPAASAVKK	10	Unmodified	_SIPAASAVKK_					0	0	0		POTEB3|p.M8I|1|0.12|ENSG00000278522|chr15:21439988-21439988|C/T|missense_variant	POTEB3|p.M8I|1|0.12|ENSG00000278522|chr15:21439988-21439988|C/T|missense_variant	POTEB3|p.M8I|1|0.12|ENSG00000278522|chr15:21439988-21439988|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2975769042969	2	486.297842	970.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.462	1	37.462	36.962	37.962	0								0	0	0	0.39244	1	12268	12268		32.812	0.85756	1				36538	11952	24982	25072	36988	36988					0.09466333339946686
SIPEFYDE	8	Unmodified	_SIPEFYDE_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.21978759765625	2	500.218923	998.423293	-0.16003	-8.0052E-05	1.8767	0.00093878	1.7167	0.00085873	500.2200492948121	13.487	0.17946	13.487	13.406	13.585	0					11	3	4	0	0	0	0.60719	1	3074	3074		47.916	7.1374	1	944020	+		36539	16012	24983	25073	36989	36989					-0.07598210709954856
SIPEKNRPL	9	Unmodified	_SIPEKNRPL_					0	0	0		ENSG00000228716|ENST00000439211|DHFR;ENST00000513314.1_1_5:79945206-79949851:-|nuORF;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000178700|ENST00000314636|DHFR2;ENST00000513048.5_1_5:79929804-79945299:-|nuORF	ENSG00000228716|ENST00000439211|DHFR	ENSG00000228716|ENST00000439211|DHFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.3068237304688	2	527.306198	1052.59784	0.33705	0.00017773	0.37968	0.0002002	0.71672	0.00037793	527.3064739678356	20.434	0.88685	20.434	20.153	21.04	0					41	28	2	0	0	0	0.54267	1	5717	5717		27.882	4.8398	1	68674			36540	7886	24984	25074	36990	36990					0.07364834225904815
SIPEKNRPL	9	Unmodified	_SIPEKNRPL_					0	0	0		ENSG00000228716|ENST00000439211|DHFR;ENST00000513314.1_1_5:79945206-79949851:-|nuORF;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000178700|ENST00000314636|DHFR2;ENST00000513048.5_1_5:79929804-79945299:-|nuORF	ENSG00000228716|ENST00000439211|DHFR	ENSG00000228716|ENST00000439211|DHFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.8096923828125	2	527.306198	1052.59784	-1.2029	-0.00063429	1.8602	0.00098091	0.65733	0.00034662	527.3070966394791	20.587	0.94588	20.587	20.206	21.152	0					32	22	2	0	0	0	0.39215	1	5751	5751		42.396	15.703	1	81103			36541	7886	24984	25074	36991	36991					0.07364834225904815
SIPGGYNAL	9	Unmodified	_SIPGGYNAL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN4|p.R283H|1|0.14|ENSG00000160803|chr1:156048553-156048553|C/T|missense_variant;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.232177734375	2	446.232168	890.449782	0.15723	7.0159E-05	0.15278	6.8176E-05	0.31001	0.00013834	446.23222055563394	39.989	0.31035	39.989	39.801	40.111	0					32	18	2	0	0	0	0.24095	1	12918	12918		56.721	12.604	1	183980			36542	3956	24985	25075	36992	36992					0.0001752297204120623
SIPGGYNAL	9	Unmodified	_SIPGGYNAL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN4|p.R283H|1|0.14|ENSG00000160803|chr1:156048553-156048553|C/T|missense_variant;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.23199462890625	2	446.232168	890.449782	0.15748	7.0272E-05	-0.47626	-0.00021252	-0.31878	-0.00014225	446.2319817645183	40.204	0.41908	40.204	40.105	40.524	0					32	25	2	0	0	0	0.047412	1	13008	13008		96.19	16.739	1	280610			36543	3956	24985	25075	36993	36993					0.0001752297204120623
SIPGGYNAL	9	Unmodified	_SIPGGYNAL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN4|p.R283H|1|0.14|ENSG00000160803|chr1:156048553-156048553|C/T|missense_variant;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.23199462890625	2	446.232168	890.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.107	1	40.107	39.607	40.607	0								0	0	0	0.11184	1	13443	13443		68.787	13.283	1				36544	3956	24985	25075	36994	36994					0.0001752297204120623
SIPGGYNAL	9	Unmodified	_SIPGGYNAL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN4|p.R283H|1|0.14|ENSG00000160803|chr1:156048553-156048553|C/T|missense_variant;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.2322692871094	2	446.232168	890.449782	-1.1673	-0.00052087	1.2595	0.00056204	0.092247	4.1163E-05	446.23266948303575	40.059	0.41734	40.059	39.848	40.265	0					37	23	2	0	0	0	0.12239	1	13482	13482		74.255	5.4682	1	349350			36545	3956	24985	25075	36995	36995					0.0001752297204120623
SIPGGYNAL	9	Unmodified	_SIPGGYNAL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN4|p.R283H|1|0.14|ENSG00000160803|chr1:156048553-156048553|C/T|missense_variant;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.2322692871094	2	446.232168	890.449782	-0.15917	-7.1026E-05	0.63905	0.00028516	0.47988	0.00021414	446.2324802200901	40.289	0.2933	40.289	40.086	40.38	0					14	11	2	0	0	0	0.50858	1	15813	15813		31.53	4.8369	1	164200			36546	3956	24985	25075	36996	36996					0.0001752297204120623
SIPGGYNAL	9	Unmodified	_SIPGGYNAL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN4|p.R283H|1|0.14|ENSG00000160803|chr1:156048553-156048553|C/T|missense_variant;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.23211669921875	2	446.232168	890.449782	-0.44197	-0.00019722	0.19304	8.614E-05	-0.24893	-0.00011108	446.2322433571924	40.06	0.65799	40.06	39.837	40.495	0					57	35	3	0	0	0	0.011031	1	14309	14309		138.83	28.488	1	570070			36547	3956	24985	25075	36997	36997					0.0001752297204120623
SIPGGYNAL	9	Unmodified	_SIPGGYNAL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN4|p.R283H|1|0.14|ENSG00000160803|chr1:156048553-156048553|C/T|missense_variant;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2318115234375	2	446.232168	890.449782	-0.44443	-0.00019832	0.14112	6.2973E-05	-0.30331	-0.00013535	446.23218924279723	40.316	1.0767	40.316	39.926	41.002	0					60	22	4	0	0	0	0.01768	2	16031	15850;16031		125.81	26.439	1	1740200			36548	3956	24985	25075	36998;36999	36999					0.0001752297204120623
SIPINSLGM	9	Unmodified	_SIPINSLGM_					0	0	0		ENST00000457761.6_1_2:172803236-172821866:+|nuORF;ENST00000494601.5_1_2:172803236-172809427:+|nuORF;HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant	ENST00000457761.6_1_2:172803236-172821866:+|nuORF	ENST00000457761.6_1_2:172803236-172821866:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.24981689453125	2	466.249503	930.484453	0.80983	0.00037758	-0.091261	-4.2551E-05	0.71857	0.00033503	466.24928548957166	26.525	0.12184	26.525	26.459	26.581	0					6	4	2	0	0	0	0.54267	1	8075	8075		27.882	0	1	50971			36549	9700	24986	25076	37000	37000					0.016430227884939086
SIPKNIQSL	9	Unmodified	_SIPKNIQSL_					0	0	0		nc|ENSG00000110080|Q11206-7|ST3GAL4;nc|ENSG00000110080|Q11206-3|ST3GAL4;nc|ENSG00000110080|Q11206-6|ST3GAL4;nc|ENSG00000110080|Q11206-5|ST3GAL4;nc|ENSG00000110080|Q11206-2|ST3GAL4;ENSG00000110080|ENST00000444328|ST3GAL4;nc|ENSG00000110080|Q11206-4|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.295166015625	2	500.295299	998.576045	-0.048226	-2.4127E-05	-0.47077	-0.00023552	-0.519	-0.00025965	500.29510561913696	33.985	0.33577	33.985	33.885	34.22	0					26	14	2	0	0	0	0.50858	1	11129	11129		31.53	0	1	271870			36550	2610	24987	25077	37001	37001					0.07670029477333173
SIPLKDIH	8	Unmodified	_SIPLKDIH_					0	0	0		nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7;nc|ENSG00000165891|Q96AV8-2|E2F7;E2F7|p.P729Lfs*53|1|0.24|ENSG00000165891|chr12:77025937-77025937|G/-|frameshift_variant	nc|ENSG00000165891|Q96AV8-3|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.77069091796875	2	461.77146	921.528367	-2.4834	-0.0011468	0.59218	0.00027345	-1.8912	-0.0008733	461.7717007743114	33.8	0.28563	33.8	33.702	33.988	0					14	8	3	0	0	0	0.59773	1	11894	11894		49.442	1.5259	1	138450			36551	5838	24988	25078	37002	37002					0.064463752771303
SIPLPIRQK	9	Unmodified	_SIPLPIRQK_					0	0	0		ENSG00000182168|ENST00000453304|UNC5C;UNC5C|p.Q860Rfs*14|1|0.28|ENSG00000182168|chr4:95170206-95170206|G/-|frameshift_variant	ENSG00000182168|ENST00000453304|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.3350830078125	2	526.334759	1050.65496	0.10036	5.2823E-05	0.81455	0.00042872	0.91491	0.00048155	526.3352386993502	28.942	0.41671	28.942	28.671	29.087	0					20	10	3	0	0	0	0.40353	1	10267	10267		42.396	6.7778	1	174730			36552	6881	24989	25079	37003	37003					0.13166301502269562
SIPSDVGIYF	10	Unmodified	_SIPSDVGIYF_					0	0	0		nc|ENSG00000211814|P0DPF4|TRAV35	nc|ENSG00000211814|P0DPF4|TRAV35	nc|ENSG00000211814|P0DPF4|TRAV35	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.5205383300781	3	366.521969	1096.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.165	1	16.165	15.665	16.665	0								0	0	0	0.33119	1	3773	3773		41.427	2.673	1				36553	11744	24990	25080	37004	37004					-0.0003338299648021348
SIQAQIQSL	9	Unmodified	_SIQAQIQSL_					0	0	0			REV__ENSG00000186395|ENST00000269576|KRT10	REV__ENSG00000186395|ENST00000269576|KRT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2770080566406	2	494.277106	986.53966	-0.75271	-0.00037205	0.82874	0.00040963	0.076035	3.7582E-05	494.27757035137984	27.838	0.31314	27.838	27.634	27.947	0					12	6	3	0	0	0	0.082776	1	10141	10141		83.647	0	1	491790	+	+	36554	12591	24991	25081	37005	37005					0.04585152580614249
SIQDKGSIQK	10	Unmodified	_SIQDKGSIQK_					0	0	0		nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	nc|ENSG00000106348|P20839-2|IMPDH1	nc|ENSG00000106348|P20839-2|IMPDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3070068359375	2	552.306395	1102.59824	0.60417	0.00033369	0.50818	0.00028067	1.1124	0.00061436	552.3065979726613	17.054	0.095352	17.054	17.007	17.102	0					4	2	2	0	0	0	0.10583	1	4749	4749		94.409	1.2659	1	642470			36555	2436	24992	25082	37006	37006					0.05104209155092576
SIQDKGSIQK	10	Unmodified	_SIQDKGSIQK_					0	0	0		nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	nc|ENSG00000106348|P20839-2|IMPDH1	nc|ENSG00000106348|P20839-2|IMPDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.3067016601562	2	552.306395	1102.59824	0.23573	0.00013019	-1.677	-0.00092624	-1.4413	-0.00079605	552.306764829352	16.805	0.25376	16.805	16.647	16.901	0					17	10	3	0	0	0	0.01554	1	4104	4104		128.35	34.75	1	116920			36556	2436	24992	25082	37007	37007					0.05104209155092576
SIQEKLLCI	9	Unmodified	_SIQEKLLCI_					0	0	0			REV__ENSG00000141524|ENST00000590602|TMC6	REV__ENSG00000141524|ENST00000590602|TMC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7994995117188	2	523.79936	1045.58417	0.52232	0.00027359	-0.37197	-0.00019484	0.15035	7.8751E-05	523.7992722903301	26.462	0.26004	26.462	26.349	26.609	0					20	8	3	0	0	0	0.037569	1	8307	8307		101.6	21.888	1	370150	+		36557	15121	24993	25083	37008	37008					0.06319840402443333
SIQFGKEVY	9	Unmodified	_SIQFGKEVY_					0	0	0			REV__ENST00000527591.5_1_14:61453838-61514994:+|nuORF	REV__ENST00000527591.5_1_14:61453838-61514994:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.280029296875	2	535.779482	1069.54441	2.1835	0.0011699	-1.6432	-0.00088038	0.54037	0.00028952	535.7788836519311	35.615	0.41902	35.615	35.457	35.876	0					35	11	4	0	0	0	0.4966	1	13423	13423		32.812	2.3088	1	1322000	+		36558	15054	24994	25084	37009	37009					0.0124203672337444
SIQHPLIKK	9	Unmodified	_SIQHPLIKK_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant;SACS|p.S2058Ffs*2|1|0.3|ENSG00000151835|chr13:23337703-23337704|-/A|frameshift_variant;SACS|p.P2063Sfs*7|1|0.36|ENSG00000151835|chr13:23337689-23337690|-/A|frameshift_variant;SACS|p.S2058Lfs*19|1|0.1|ENSG00000151835|chr13:23337704-23337704|A/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.3353271484375	2	532.334759	1062.65496	0.12389	6.5949E-05	0.69444	0.00036967	0.81833	0.00043562	532.3352634598915	18.921	0.075672	18.921	18.889	18.965	0					4	2	2	0	0	0	0.046074	1	5627	5627		101.25	29.375	1	564740			36559	4990	24995	25085	37010	37010					0.12614301502276248
SIQHPLIKK	9	Unmodified	_SIQHPLIKK_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant;SACS|p.S2058Ffs*2|1|0.3|ENSG00000151835|chr13:23337703-23337704|-/A|frameshift_variant;SACS|p.P2063Sfs*7|1|0.36|ENSG00000151835|chr13:23337689-23337690|-/A|frameshift_variant;SACS|p.S2058Lfs*19|1|0.1|ENSG00000151835|chr13:23337704-23337704|A/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.3349609375	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.882	1	18.882	18.382	19.382	0								0	0	0	0.1347	1	5874	5874		65.465	15.441	1				36560	4990	24995	25085	37011	37011					0.12614301502276248
SIQHPLIKK	9	Unmodified	_SIQHPLIKK_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant;SACS|p.S2058Ffs*2|1|0.3|ENSG00000151835|chr13:23337703-23337704|-/A|frameshift_variant;SACS|p.P2063Sfs*7|1|0.36|ENSG00000151835|chr13:23337689-23337690|-/A|frameshift_variant;SACS|p.S2058Lfs*19|1|0.1|ENSG00000151835|chr13:23337704-23337704|A/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.22564697265625	3	355.225598	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.86	1	18.86	18.36	19.36	0								0	0	0	0.3063	1	5726	5726		33.922	2.2874	1				36561	4990	24995	25085	37012	37012					0.12614301502276248
SIQHVFIKK	9	Unmodified	_SIQHVFIKK_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.2256164550781	3	367.225598	1098.65496	0.27052	9.9342E-05	-0.63716	-0.00023398	-0.36664	-0.00013464	367.2254670458993	21.534	0.36898	21.534	21.424	21.793	0					14	7	3	0	0	0	0.24334	1	7166	7166		56.434	13.57	1	493780			36562	3560	24996	25086	37013	37013					0.10958301502273571
SIQHVFIKK	9	Unmodified	_SIQHVFIKK_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.22552490234375	3	367.225598	1098.65496	-0.17894	-6.571E-05	0.014216	5.2207E-06	-0.16472	-6.0489E-05	367.2256927992516	21.548	0.26686	21.548	21.437	21.704	0					12	5	3	0	0	0	0.18416	1	7022	7022		63.534	19.157	1	562780			36563	3560	24996	25086	37014	37014					0.10958301502273571
SIQKVIGFAK	10	Unmodified	_SIQKVIGFAK_					0	0	0		ENST00000547065.1_1_12:48238531-48272768:-|nuORF;ENSG00000111424|ENST00000549336|VDR;nc|ENSG00000111424|P11473-2|VDR	ENST00000547065.1_1_12:48238531-48272768:-|nuORF	ENST00000547065.1_1_12:48238531-48272768:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.2254638671875	3	364.225486	1089.65463	0.28116	0.00010241	-0.76477	-0.00027855	-0.4836	-0.00017614	364.22536893322035	30.872	0.09285	30.872	30.827	30.92	0					4	2	2	0	0	0	0.54861	1	11598	11598		40.058	3.6114	1	61923			36564	10586	24997	25087	37015	37015					0.11338881782421595
SIQLFQIY	8	Unmodified	_SIQLFQIY_					0	0	0			REV__LRBA-SH3D19|1|fusion	REV__LRBA-SH3D19|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.2795104980469	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.635	1	38.635	38.135	39.135	0								0	0	0	1.7419	1	13815	13815		55.504	2.1528	1		+		36565	13909	24998	25088	37016	37016					0.03883242074323334
SIQNQMQSK	9	Unmodified	_SIQNQMQSK_					0	0	0		ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2639770507812	2	532.263673	1062.51279	0.36398	0.00019373	0.19154	0.00010195	0.55552	0.00029568	532.263676156423	19.712	0.1095	19.712	19.626	19.736	0					5	3	2	0	0	0	0.046074	1	5152	5152		96.665	11.504	1	101040			36566	5291	24999	25089	37017	37017					-0.015962793022254118
SIQNQMQSK	9	Unmodified	_SIQNQMQSK_					0	0	0		ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2638549804688	2	532.263673	1062.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.034	1	20.034	19.534	20.534	0								0	0	0	0.017282	1	6148	6148		102.06	3.4322	1				36567	5291	24999	25089	37018	37018					-0.015962793022254118
SIQNQMQSK	9	Unmodified	_SIQNQMQSK_					0	0	0		ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2637329101562	2	532.263673	1062.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.723	1	19.723	19.223	20.223	0								0	0	0	0.11963	1	5391	5391		66.962	8.18	1				36568	5291	24999	25089	37019	37019					-0.015962793022254118
SIQNQMQSK	9	Unmodified	_SIQNQMQSK_					0	0	0		ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.26416015625	2	532.263673	1062.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.798	1	19.798	19.298	20.298	0								0	0	0	0.058887	1	5447	5447		83.647	24.865	1				36569	5291	24999	25089	37020	37020					-0.015962793022254118
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.3383178710938	2	565.33803	1128.66151	1.2171	0.00068808	-0.75907	-0.00042913	0.45804	0.00025895	565.3376037559955	16.29	0.2373	16.29	16.21	16.447	0					22	10	4	0	0	0	0.026656	1	3683	3683		106.68	8.1011	1	904640			36570	4274	25000	25090	37021	37021					0.10232194662989968
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.22760009765625	3	377.227779	1128.66151	0.78224	0.00029508	-0.76981	-0.00029039	0.012435	4.6907E-06	377.227479901044	16.554	0.30375	16.554	16.464	16.768	0					17	7	4	0	0	0	0.0055674	1	4499	4499		155.58	20.819	1	3411600			36571	4274	25000	25090	37022	37022					0.10232194662989968
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.3380737304688	2	565.33803	1128.66151	0.31183	0.00017629	-0.22864	-0.00012926	0.083197	4.7034E-05	565.337914200857	16.53	0.2238	16.53	16.438	16.662	0					18	5	5	0	0	0	0.0082431	1	4503	4503		128.6	30.02	1	6888900			36572	4274	25000	25090	37023	37023					0.10232194662989968
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.2278747558594	3	377.227779	1128.66151	3.5369	0.0013342	-3.3746	-0.001273	0.16222	6.1195E-05	377.5608248809581	16.275	0.09202	16.275	16.223	16.315	0					6	3	2	0	0	0	0.04067	1	3878	3878		98.582	12.72	1	188420			36573	4274	25000	25090	37024	37024					0.10232194662989968
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.2275695800781	3	377.227779	1128.66151	0.23594	8.9005E-05	-0.66078	-0.00024926	-0.42484	-0.00016026	377.22751766416917	16.489	0.2659	16.489	16.43	16.696	0					13	5	4	0	0	0	0.011389	1	4731	4731		138.06	42.029	1	1369500			36574	4274	25000	25090	37025	37025					0.10232194662989968
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.3382568359375	2	565.33803	1128.66151	0.1922	0.00010866	0.16266	9.1955E-05	0.35486	0.00020061	565.3381659257384	16.506	0.2677	16.506	16.396	16.664	0					14	5	4	0	0	0	0.0042158	1	4739	4739		145.46	46.448	1	3405600			36575	4274	25000	25090	37026	37026					0.10232194662989968
SIQRSPAKE	9	Unmodified	_SIQRSPAKE_					0	0	0			REV__nc|ENSG00000066855|Q15390-2|MTFR1	REV__nc|ENSG00000066855|Q15390-2|MTFR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2799072265625	2	508.28018	1014.54581	-0.58218	-0.00029591	1.9589	0.00099568	1.3767	0.00069977	508.2801446534678	18.728	0.090805	18.728	18.68	18.771	0					5	3	2	0	0	0	0.38666	1	4955	4955		42.864	3.6114	1	37927	+		36576	13131	25001	25091	37027	37027					0.03911670812135526
SIQSEMRQQ	9	Oxidation (M)	_SIQSEM(Oxidation (M))RQQ_		SIQSEM(1)RQQ		SIQSEM(110)RQQ	0	0	1			REV__B2M|p.S16Afs*27|1|0.18|ENSG00000166710|chr15:44711588-44711591|TCTT/-|frameshift_variant	REV__B2M|p.S16Afs*27|1|0.18|ENSG00000166710|chr15:44711588-44711591|TCTT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.768310546875	2	561.764037	1121.51352	1.7881	0.0010045	4.2314	0.0023771	6.0195	0.0033815	561.7672547536264	24.027	0.56753	24.027	23.813	24.38	0					31	11	5	0	0	0	0.02953	1	8216	8216		109.48	8.2257	1	1758200	+		36577	12268	25002	25092	37028	37028		475			-0.04237484653185675
SIQTAIAKK	9	Unmodified	_SIQTAIAKK_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.29718017578125	2	480.297842	958.581131	0.047038	2.2592E-05	-0.58342	-0.00028021	-0.53638	-0.00025762	480.29759892492336	19.732	0.10398	19.732	19.662	19.766	0					5	3	2	0	0	0	0.16806	1	5168	5168		65.465	14.273	1	100010			36578	7750	25003	25093	37029	37029					0.10018333339951369
SIQTAIAKK	9	Unmodified	_SIQTAIAKK_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2971496582031	2	480.297842	958.581131	-0.1822	-8.7508E-05	-0.47276	-0.00022706	-0.65495	-0.00031457	480.2974305006265	20.059	0.14754	20.059	20.005	20.153	0					7	3	3	0	0	0	0.023928	1	6171	6171		115.49	24.717	1	521740			36579	7750	25003	25093	37030	37030					0.10018333339951369
SIQTSVNAL	9	Unmodified	_SIQTSVNAL_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.755615234375	2	466.756007	931.497461	0.65852	0.00030737	-1.122	-0.00052368	-0.46344	-0.00021631	466.75548532167846	38.763	0.27486	38.763	38.623	38.897	0					16	10	2	0	0	0	0.17062	1	15214	15214		65.157	13.629	1	259630			36580	4007	25004	25094	37031	37031					0.02897177172224019
SIQTSVNAL	9	Unmodified	_SIQTSVNAL_					0	0	0		ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	ENSG00000135624|ENST00000258091|CCT7	ENSG00000135624|ENST00000258091|CCT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7565002441406	2	466.756007	931.497461	-0.50238	-0.00023449	0.078185	3.6493E-05	-0.42419	-0.00019799	466.7561403610454	38.732	0.16581	38.732	38.644	38.81	0					5	3	2	0	0	0	0.18416	1	15254	15254		63.534	3.4156	1	55547			36581	4007	25004	25094	37032	37032					0.02897177172224019
SIQVVVVQK	9	Unmodified	_SIQVVVVQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.313720703125	2	500.313492	998.612431	-1.0158	-0.00050821	1.2046	0.00060268	0.18882	9.4472E-05	500.3142208242922	29.762	0.18384	29.762	29.675	29.859	0					10	7	2	0	0	0	0.10506	1	9708	9708		78.264	24.912	1	74728			36582	7487	25005	25095	37033	37033					0.11306906374045411
SIQVVVVQK	9	Unmodified	_SIQVVVVQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.3133239746094	2	500.313492	998.612431	0.90582	0.00045319	-0.91823	-0.0004594	-0.012404	-6.2059E-06	500.31307228499037	29.962	0.34019	29.962	29.851	30.192	0					19	7	5	0	0	0	0.11411	1	11159	11159		76.17	21.086	1	728800			36583	7487	25005	25095	37034	37034					0.11306906374045411
SIQVVVVQK	9	Unmodified	_SIQVVVVQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.3134460449219	2	500.313492	998.612431	0.15726	7.8679E-05	-0.45302	-0.00022665	-0.29576	-0.00014797	500.31320287742017	29.769	0.12032	29.769	29.694	29.814	0					5	3	2	0	0	0	0.15558	1	10066	10066		66.962	21.94	1	96484			36584	7487	25005	25095	37035	37035					0.11306906374045411
SIQVVVVQK	9	Unmodified	_SIQVVVVQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.31329345703125	2	500.313492	998.612431	1.0927	0.00054668	-1.519	-0.00075996	-0.42628	-0.00021327	500.31264964894945	29.939	0.3175	29.939	29.781	30.099	0					13	6	3	0	0	0	0.082776	1	11038	11038		83.647	28.925	1	491610			36585	7487	25005	25095	37036	37036					0.11306906374045411
SIREYLVK	8	Unmodified	_SIREYLVK_					0	0	0		CCDC102B|p.N420Tfs*5|3|0.26|ENSG00000150636|chr18:68897418-68897418|A/-|frameshift_variant;ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B	CCDC102B|p.N420Tfs*5|3|0.26|ENSG00000150636|chr18:68897418-68897418|A/-|frameshift_variant	CCDC102B|p.N420Tfs*5|3|0.26|ENSG00000150636|chr18:68897418-68897418|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2979736328125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.171	1	23.171	22.671	23.671	0								0	0	0	1.7419	1	6664	6664		35.618	2.8059	1				36586	392	25006	25096	37037	37037					0.0781033333993264
SIRIIYKHA	9	Unmodified	_SIRIIYKHA_					0	0	0			REV__ENSG00000016490|ENST00000394711|CLCA1	REV__ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.5571594238281	3	367.557348	1099.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.593	1	37.593	37.093	38.093	0								0	0	0	0.37233	1	14263	14263		19.104	0.84144	1		+		36587	12926	25007	25097	37038	37038					0.10437417359503343
SIRKKKSAS	9	Unmodified	_SIRKKKSAS_					0	0	0			REV__ENST00000488636.5_1_2:201399822-201407388:+|nuORF	REV__ENST00000488636.5_1_2:201399822-201407388:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.8138427734375	2	502.81419	1003.61383	0.73731	0.00037073	-1.3447	-0.00067614	-0.6074	-0.00030541	502.8135030348936	54.48	0.18547	54.48	54.396	54.582	0					18	11	2	0	0	0	0.60749	1	15977	15977		20.947	20.947	1	119970	+		36588	15891	25008	25098	37039	37039					0.11216540462794455
SIRLNRSVR	9	Unmodified	_SIRLNRSVR_					0	0	0			REV__ENST00000396161.9_2_19:58133856-58133982:+|nuORF	REV__ENST00000396161.9_2_19:58133856-58133982:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.2257995605469	3	367.559751	1099.65742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.353	1	21.353	20.853	21.853	0								0	0	0	0.3428	1	6116	6116		41.427	17.904	1		+		36589	18894	25009	25099	37040	37040					0.1115814995994242
SIRLWNYE	8	Unmodified	_SIRLWNYE_					0	0	0		nc|ENSG00000243710|Q96MR6-2|CFAP57;ENSG00000243710|ENST00000372492|CFAP57	nc|ENSG00000243710|Q96MR6-2|CFAP57	nc|ENSG00000243710|Q96MR6-2|CFAP57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7778930664062	2	540.777274	1079.53999	1.9932	0.0010779	1.2615	0.0006822	3.2547	0.0017601	540.7776024702998	44.384	0.12907	44.384	44.328	44.457	0					12	7	2	0	0	0	0.65276	1	17287	17287		40.573	3.4135	1	84555			36590	7957	25010	25100	37041	37041					0.003405723004561878
SIRMGDIRRGV	11	Unmodified	_SIRMGDIRRGV_					0	0	0		WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant;ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant	WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.5697326660156	3	420.571551	1258.69282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.298	1	16.298	15.798	16.798	0								0	0	0	0.44926	1	3881	3881		26.063	0.9374	1				36591	5233	25011	25101	37042	37042					0.0738244442541145
SIRQSRQLK	9	Unmodified	_SIRQSRQLK_					0	0	0			REV__ENSG00000079841|ENST00000521978|RIMS1	REV__ENSG00000079841|ENST00000521978|RIMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.55731201171875	3	372.55964	1114.65709	0.25205	9.3903E-05	1.5772	0.0005876	1.8292	0.0006815	372.56013904734084	18.419	0.26941	18.419	18.207	18.476	0					13	5	3	0	0	0	0.43426	1	5613	5613		30.318	1.1477	1	995050	+		36592	13288	25012	25102	37043	37043					0.1043473024008108
SIRTFVPKN	9	Unmodified	_SIRTFVPKN_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.3093872070312	2	531.308741	1060.60293	2.4385	0.0012956	-1.6562	-0.00087995	0.78227	0.00041563	531.3078441400952	29.093	0.17292	29.093	29.007	29.18	0					7	4	2	0	0	0	0.1424	1	10368	10368		69.628	6.3214	1	117250			36593	1177	25013	25103	37044	37044					0.07505138088527019
SIRTFVPKN	9	Unmodified	_SIRTFVPKN_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.812744140625	2	531.308741	1060.60293	0.99213	0.00052713	2.946	0.0015652	3.9382	0.0020924	531.8120802499029	29.079	0.15704	29.079	29.022	29.179	0					7	3	3	0	0	0	0.27249	1	10739	10739		52.937	1.744	1	104530			36594	1177	25013	25103	37045	37045					0.07505138088527019
SIRTLTALMKK	11	Unmodified	_SIRTLTALMKK_					0	0	0			REV__ENST00000452510.6_2_5:134102740-134109419:+|nuORF	REV__ENST00000452510.6_2_5:134102740-134109419:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.25933837890625	3	421.260202	1260.75878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.452	1	49.452	48.952	49.952	0								0	0	0	0.45674	1	19556	19556		23.378	1.6922	1		+		36595	19318	25014	25104	37046	37046					0.13882840547603337
SIRVQSKY	8	Unmodified	_SIRVQSKY_					0	0	0			REV__ENST00000479181.1_1_7:140404755-140406423:+|nuORF	REV__ENST00000479181.1_1_7:140404755-140406423:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.5222473144531	3	327.522303	979.545079	0.28851	9.4493E-05	-0.8876	-0.00029071	-0.59909	-0.00019621	327.52192812449823	21.451	0.20016	21.451	21.306	21.506	0					11	7	2	0	0	0	0.79882	1	5910	5910		15.642	0	1	51771	+		36596	19571	25015	25105	37047	37047					0.054488761630864246
SIRVRSDRY	9	Unmodified	_SIRVRSDRY_					0	0	0			REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF	REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.3191528320312	2	576.317628	1150.6207	3.2997	0.0019017	-0.44236	-0.00025494	2.8573	0.0016467	576.3174098705284	34.812	0.31497	34.812	34.7	35.015	0					12	6	3	0	0	0	0.17854	1	13392	13392		64.207	5.4253	1	615280	+		36597	17869	25016	25106	37048	37048					0.051418533433889024
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	417.90673828125	3	417.906705	1250.69829	0.49428	0.00020656	-0.31027	-0.00012967	0.18401	7.6897E-05	417.9065031134231	22.398	0.19271	22.398	22.318	22.511	0					11	5	3	0	0	0	0.06456	1	6322	6322		115.91	57.285	1	567650		+	36598	11643	25017	25107	37049	37049					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	626.3565063476562	2	626.356419	1250.69829	-0.70567	-0.000442	1.0307	0.00064557	0.325	0.00020356	626.3570866513636	22.439	0.12331	22.439	22.355	22.479	0					8	3	3	0	0	0	0.1725	1	6599	6599		82.831	15.337	1	267810		+	36599	11643	25017	25107	37050	37050					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	626.3563842773438	2	626.356419	1250.69829	1.3587	0.00085101	-1.2921	-0.0008093	0.066586	4.1707E-05	626.3555210196502	22.608	0.26063	22.608	22.55	22.811	0					12	5	4	0	0	0	0.062358	1	7684	7684		105.17	27.847	1	2574500		+	36600	11643	25017	25107	37051	37051					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.9067077636719	3	417.906705	1250.69829	0.098186	4.1032E-05	-0.054311	-2.2697E-05	0.043875	1.8336E-05	417.90672321980855	22.496	0.10858	22.496	22.437	22.545	0					6	2	3	0	0	0	0.39647	1	6720	6720		77.288	26.497	1	313480		+	36601	11643	25017	25107	37052	37052					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.24114990234375	3	417.906705	1250.69829	-0.05109	-2.1351E-05	0.0047685	1.9928E-06	-0.046322	-1.9358E-05	417.9066111342054	22.5	0.15328	22.5	22.422	22.575	0					8	3	3	0	0	0	0.27406	1	6715	6715		82.494	28.151	1	202730		+	36602	11643	25017	25107	37053	37053					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.90655517578125	3	417.906705	1250.69829	-0.2963	-0.00012382	-0.020784	-8.6858E-06	-0.31708	-0.00013251	417.9066821324501	22.597	0.26682	22.597	22.538	22.805	0					15	5	4	0	0	0	0.041183	1	7550	7550		123.62	49.777	1	4957900		+	36603	11643	25017	25107	37054	37054					0.08296446488884612
SIRYEALKK	9	Unmodified	_SIRYEALKK_					0	0	0		KIAA0930|p.T293Hfs*26|1|0.3|ENSG00000100364|chr22:45200011-45200012|-/G|frameshift_variant;KIAA0930|p.T293Pfs*27|2|0.16|ENSG00000100364|chr22:45200012-45200012|G/-|frameshift_variant;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	KIAA0930|p.T293Hfs*26|1|0.3|ENSG00000100364|chr22:45200011-45200012|-/G|frameshift_variant	KIAA0930|p.T293Hfs*26|1|0.3|ENSG00000100364|chr22:45200011-45200012|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	369.88916015625	3	369.888874	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.711	1	16.711	16.211	17.211	0								0	0	0	0.35377	1	4830	4830		24.519	3.5723	1				36604	2014	25018	25108	37055	37055					0.09573693777042536
SISATKELG	9	Unmodified	_SISATKELG_					0	0	0			REV__nc|ENSG00000111801|O00478-2|BTN3A3	REV__nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.25042724609375	2	453.250557	904.486562	0.69015	0.00031281	-1.4665	-0.00066467	-0.77631	-0.00035186	453.2498341734053	15.576	0.17873	15.576	15.49	15.669	0					10	4	3	0	0	0	0.55379	1	4064	4064		26.693	1.1189	1	569870	+		36605	13981	25019	25109	37056	37056					0.030497747979438827
SISAVVMEK	9	Unmodified	_SISAVVMEK_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2624206542969	2	482.26261	962.510668	0.56126	0.00027068	-1.9209	-0.0009264	-1.3597	-0.00065573	482.2619351993259	30.408	0.90109	30.408	29.853	30.754	0					35	22	2	0	0	0	0.02429	1	10953	10953		114.89	21.699	1	900870			36606	4282	25020	25110	37057	37057					0.027912919599771158
SISAVVMEK	9	Unmodified	_SISAVVMEK_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2628173828125	2	482.26261	962.510668	-0.10301	-4.9678E-05	-0.023405	-1.1287E-05	-0.12642	-6.0966E-05	482.2625937985898	30.375	0.47124	30.375	30.008	30.479	0					14	10	3	0	0	0	0.04067	1	11356	11356		98.582	16.341	1	463040			36607	4282	25020	25110	37058	37058					0.027912919599771158
SISAVVMEK	9	Unmodified	_SISAVVMEK_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2632751464844	2	482.26261	962.510668	0.16	7.7163E-05	0.17821	8.5944E-05	0.33821	0.00016311	482.2627109824749	30.167	0.20131	30.167	30.077	30.278	0					7	5	2	0	0	0	0.28897	1	10230	10230		51.193	1.7511	1	72914			36608	4282	25020	25110	37059	37059					0.027912919599771158
SISAVVMEK	9	Unmodified	_SISAVVMEK_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.26251220703125	2	482.26261	962.510668	-0.61548	-0.00029682	0.12555	6.0546E-05	-0.48993	-0.00023627	482.2627621940357	30.351	0.56176	30.351	29.896	30.458	0					19	11	2	0	0	0	0.032383	1	11235	11235		106.68	24.443	1	807440			36609	4282	25020	25110	37060	37060					0.027912919599771158
SISAYTMPL	9	Unmodified	_SISAYTMPL_					0	0	0		TMC3|p.H607Tfs*40|1|0.34|ENSG00000188869|chr15:81341415-81341415|G/-|frameshift_variant;nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;ENSG00000188869|ENST00000359440|TMC3	TMC3|p.H607Tfs*40|1|0.34|ENSG00000188869|chr15:81341415-81341415|G/-|frameshift_variant	TMC3|p.H607Tfs*40|1|0.34|ENSG00000188869|chr15:81341415-81341415|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7477722167969	2	491.749336	981.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.312	1	16.312	15.812	16.812	0								0	0	0	0.22106	1	3689	3689		47.916	0	1				36610	7280	25021	25111	37061	37061					-0.007363969313814778
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.2936401367188	2	550.292756	1098.57096	1.2825	0.00070574	-0.45221	-0.00024885	0.83028	0.0004569	550.2923690163527	31.396	0.57662	31.396	31.27	31.847	0					70	25	6	0	0	0	0.037924	2	10072	10072;10084		101.25	46.484	1	3848000			36611	1815	25022	25112	37062;37063	37062					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.197509765625	3	367.197596	1098.57096	0.75785	0.00027828	-0.88526	-0.00032507	-0.12741	-4.6786E-05	367.1973232860114	31.658	1.5021	31.658	31.452	32.954	0					105	37	5	0	0	0	0.21263	2	11518	11518;11689		76.17	16.051	1	23975000			36612	1815	25022	25112	37064;37065	37064					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2930908203125	2	550.292756	1098.57096	1.8345	0.0010095	-1.1223	-0.00061762	0.71213	0.00039188	550.2920360416183	31.631	0.26235	31.631	31.531	31.794	0					13	6	3	0	0	0	0.015496	1	11539	11539		129.42	57.544	1	487660			36613	1815	25022	25112	37066	37066					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.29345703125	2	550.292756	1098.57096	0.54902	0.00030212	-0.37301	-0.00020527	0.17601	9.6857E-05	550.2924854631758	31.643	1.1453	31.643	31.479	32.625	0					104	28	6	0	0	0	0.0059092	3	11510	11510;11700;11872		154.12	71.878	1	25402000			36614	1815	25022	25112	37067;37068;37069	37067					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.293212890625	2	550.292756	1098.57096	0.31929	0.0001757	0.42239	0.00023244	0.74168	0.00040814	550.2928283183699	31.429	0.72792	31.429	31.324	32.052	0					81	28	5	0	0	0	0.019258	1	10394	10394		123.21	61.101	1	6610200			36615	1815	25022	25112	37070	37070					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2937622070312	2	550.292756	1098.57096	-0.33341	-0.00018347	1.569	0.00086343	1.2356	0.00067996	550.2936577632506	31.424	0.13844	31.424	31.361	31.5	0					9	5	2	0	0	0	0.056004	1	10415	10415		93.143	32.171	1	127180			36616	1815	25022	25112	37071	37071					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.29296875	2	550.292756	1098.57096	0.18847	0.00010372	1.0063	0.00055375	1.1947	0.00065746	550.2931996721201	31.646	0.30504	31.646	31.538	31.844	0					17	6	4	0	0	0	0.026538	1	11939	11939		112.41	35.637	1	942930			36617	1815	25022	25112	37072	37072					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.1975402832031	3	367.197596	1098.57096	-0.10862	-3.9886E-05	0.063156	2.3191E-05	-0.045467	-1.6695E-05	367.19760841285654	31.438	0.48136	31.438	31.342	31.823	0					35	12	4	0	0	0	0.41113	1	10813	10813		65.465	65.465	1	2986400			36618	1815	25022	25112	37073	37073					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2926635742188	2	550.292756	1098.57096	1.1538	0.00063491	-0.49735	-0.00027369	0.65641	0.00036122	550.2923897981625	31.437	0.22338	31.437	31.342	31.566	0					10	5	3	0	0	0	0.28897	1	10834	10834		51.193	6.8155	1	177930			36619	1815	25022	25112	37074	37074					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.197509765625	3	367.197596	1098.57096	-0.17918	-6.5794E-05	-0.15423	-5.6633E-05	-0.33341	-0.00012243	367.19767283244147	31.578	1.421	31.578	31.471	32.892	0					76	28	7	0	0	0	0.28897	1	11807	11807		66.962	42.73	1	33912000			36620	1815	25022	25112	37075	37075					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2931518554688	2	550.292756	1098.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.606	1	31.606	31.106	32.106	0								0	0	0	0.0026431	1	11834	11834		117.81	41.037	1				36621	1815	25022	25112	37076	37076					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2925415039062	2	550.292756	1098.57096	1.8153	0.00099893	-1.9944	-0.0010975	-0.1791	-9.8555E-05	550.2915404019199	31.61	0.41494	31.61	31.403	31.818	0					20	8	3	0	0	0	0.0059092	1	11846	11846		154.12	56.646	1	1009800			36622	1815	25022	25112	37077	37077					0.025617256147143053
SISDKLDRQR	10	Unmodified	_SISDKLDRQR_					0	0	0		nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000083067|Q9HCF6-8|TRPM3	nc|ENSG00000083067|Q9HCF6-8|TRPM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.3330078125	2	609.333476	1216.6524	0.15698	9.5651E-05	-1.1111	-0.00067701	-0.95409	-0.00058136	609.3324570151766	23.257	0.12505	23.257	23.173	23.298	0					6	3	2	0	0	0	0.44601	1	6708	6708		51.193	4.7359	1	128120			36623	1687	25023	25113	37078	37078					0.05273801306634596
SISELKHALSG	11	Unmodified	_SISELKHALSG_					0	0	0		ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1	ENSG00000129167|ENST00000682019|TPH1	ENSG00000129167|ENST00000682019|TPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.3154907226562	2	571.31422	1140.61389	-1.3929	-0.0007958	2.9318	0.001675	1.5388	0.00087916	571.3161296988271	32.586	0.21857	32.586	32.44	32.659	0					12	7	2	0	0	0	0.33926	1	11316	11316		58.23	12.258	1	46671			36624	3582	25024	25114	37079	37079					0.0492049567212689
SISGAERVA	9	Unmodified	_SISGAERVA_					0	0	0			REV__ENST00000601451.5_1_19:41210883-41211201:-|nuORF	REV__ENST00000601451.5_1_19:41210883-41211201:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.23968505859375	2	445.240524	888.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.549	1	25.549	25.049	26.049	0								0	0	0	0.11159	1	8960	8960		68.846	1.3525	1		+		36625	20599	25025	25115	37080	37080					0.017800238579980032
SISGHVTLY	9	Unmodified	_SISGHVTLY_					0	0	0		nc|ENSG00000253409|A0A1B0GX95|TRBV7-4	nc|ENSG00000253409|A0A1B0GX95|TRBV7-4	nc|ENSG00000253409|A0A1B0GX95|TRBV7-4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7590637207031	2	488.758549	975.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.418	1	35.418	34.918	35.918	0								0	0	0	0.28164	1	12617	12617		38.806	9.6566	1				36626	11789	25026	25116	37081	37081					0.013814810348549145
SISGPISTSK	10	Unmodified	_SISGPISTSK_					0	0	0		nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7689514160156	2	488.769114	975.523675	-1.2502	-0.00061106	0.42627	0.00020835	-0.82394	-0.00040271	488.7693126484237	23.818	0.26599	23.818	23.701	23.967	0					16	9	2	0	0	0	0.4287	1	7190	7190		53.089	8.9722	1	208470			36627	1960	25027	25117	37082	37082					0.03493446343713913
SISGPISTSK	10	Unmodified	_SISGPISTSK_					0	0	0		nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.76885986328125	2	488.769114	975.523675	-0.17472	-8.5398E-05	-0.67858	-0.00033167	-0.8533	-0.00041707	488.7688663817721	23.825	0.25599	23.825	23.713	23.969	0					12	6	3	0	0	0	0.46128	1	7335	7335		49.536	1.8787	1	134060			36628	1960	25027	25117	37083	37083					0.03493446343713913
SISGVCRQL	9	Carbamidomethyl (C)	_SISGVC(Carbamidomethyl (C))RQL_	SISGVC(1)RQL		SISGVC(100)RQL		0	1	0		ENST00000416144.5_1_7:99160096-99161679:+|nuORF;ENST00000422422.5_1_7:99158252-99161679:+|nuORF	ENST00000416144.5_1_7:99160096-99161679:+|nuORF	ENST00000416144.5_1_7:99160096-99161679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.27215576171875	2	510.268758	1018.52296	3.0545	0.0015586	1.9023	0.00097068	4.9568	0.0025293	510.2706753108527	14.885	0.16711	14.885	14.828	14.995	0					9	3	4	0	0	0	0.034359	1	3814	3814		104.75	6.1172	1	2155900			36629	9355	25028	25118	37084	37084	387				0.014443284230083009
SISHPNLQK	9	Unmodified	_SISHPNLQK_					0	0	0		ENST00000519181.5_1_8:103916517-103989979:+|nuORF	ENST00000519181.5_1_8:103916517-103989979:+|nuORF	ENST00000519181.5_1_8:103916517-103989979:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2822265625	2	512.282723	1022.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.331	1	15.331	14.831	15.831	0								0	0	0	0.22284	1	3415	3415		47.657	6.8792	1				36630	10283	25029	25119	37085	37085					0.040519746747463614
SISISVAR	8	Unmodified	_SISISVAR_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	416.747802734375	2	416.747985	831.481417	0.4872	0.00020304	-0.38374	-0.00015992	0.10346	4.3118E-05	416.74774732592834	29.592	0.14123	29.592	29.541	29.682	0					6	3	2	0	0	0	0.2678	1	10595	10595		93.195	13.744	1	169140		+	36631	630	25030	25120	37086	37086					0.05893515725983889
SISISVAR	8	Unmodified	_SISISVAR_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.7478942871094	2	416.747985	831.481417	0.067791	2.8252E-05	-0.66329	-0.00027643	-0.5955	-0.00024817	416.7477922673728	29.591	0.16091	29.591	29.522	29.683	0					7	3	3	0	0	0	0.3049	1	10975	10975		82.241	5.4664	1	155020		+	36632	630	25030	25120	37087	37087					0.05893515725983889
SISISVAR	8	Unmodified	_SISISVAR_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.74774169921875	2	416.747985	831.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.587	1	29.587	29.087	30.087	0								0	0	0	1.7419	1	10856	10856		37.812	4.9991	1			+	36633	630	25030	25120	37088	37088					0.05893515725983889
SISISVARG	9	Unmodified	_SISISVARG_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2586975097656	2	445.258717	888.50288	0.18805	8.373E-05	-0.39441	-0.00017562	-0.20636	-9.1885E-05	445.258465056276	29.365	0.17787	29.365	29.292	29.47	0					10	6	2	0	0	0	0.21263	1	9262	9262		60.118	5.3419	1	83521		+	36634	630	25031	25121	37089	37089					0.05416900754710241
SISISVARG	9	Unmodified	_SISISVARG_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.25811767578125	2	445.258717	888.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.641	1	29.641	29.141	30.141	0								0	0	0	0.024201	1	10608	10608		98.629	21.312	1			+	36635	630	25031	25121	37090	37090					0.05416900754710241
SISISVARG	9	Unmodified	_SISISVARG_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.2588806152344	2	445.258717	888.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.405	1	29.405	28.905	29.905	0								0	0	0	0.072369	1	9569	9569		79.713	7.8351	1			+	36636	630	25031	25121	37091	37091					0.05416900754710241
SISKALGLK	9	Unmodified	_SISKALGLK_					0	0	0			REV__ENST00000342992.10_3_2:179410309-179410396:-|nuORF	REV__ENST00000342992.10_3_2:179410309-179410396:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.79443359375	2	458.794935	915.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.851	1	20.851	20.351	21.351	0								0	0	0	0.099216	1	6536	6536		71.877	10.906	1		+		36637	18463	25032	25122	37092	37092					0.11415234828280063
SISKWQLK	8	Unmodified	_SISKWQLK_					0	0	0			REV__ENST00000548679.5_1_12:72291037-72301659:+|nuORF	REV__ENST00000548679.5_1_12:72291037-72301659:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2924499511719	2	495.292559	988.570566	0.74107	0.00036704	-0.91696	-0.00045416	-0.1759	-8.7119E-05	495.29215702766123	20.972	0.73219	20.972	20.892	21.624	0					30	17	4	0	0	0	0.23367	1	6586	6586		120.62	5.162	1	3461800	+		36638	14315	25034	25123	37093	37093					0.0758235068550448
SISKWQLK	8	Unmodified	_SISKWQLK_					0	0	0			REV__ENST00000548679.5_1_12:72291037-72301659:+|nuORF	REV__ENST00000548679.5_1_12:72291037-72301659:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2924499511719	2	495.292559	988.570566	-0.039908	-1.9766E-05	-0.20962	-0.00010382	-0.24953	-0.00012359	495.2925007306431	20.888	0.45879	20.888	20.781	21.24	0					14	9	3	0	0	0	0.25102	1	6849	6849		99.375	0	1	2463600	+		36639	14315	25034	25123	37094	37094					0.0758235068550448
SISLLISHEKQ	11	Unmodified	_SISLLISHEKQ_					0	0	0			REV__ENSG00000196421|ENST00000636176|C20orf204	REV__ENSG00000196421|ENST00000636176|C20orf204	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.8558959960938	2	627.856252	1253.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.718	1	41.718	41.218	42.218	0								0	0	0	0.43542	1	16402	16402		29.17	2.4771	1		+		36640	17251	25035	25124	37095	37095					0.08125026769039323
SISLLWPCT	9	Unmodified	_SISLLWPCT_					0	0	0			REV__ENST00000561302.5_1_15:76430142-76521275:+|nuORF	REV__ENST00000561302.5_1_15:76430142-76521275:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.51373291015625	3	340.512528	1018.51575	3.0203	0.0010284	0.61267	0.00020862	3.6329	0.0012371	340.5127201812794	13.283	0.34432	13.283	13.08	13.424	0					11	7	2	0	0	0	0.51817	1	3056	3056		45.972	16.823	1	580270	+		36641	20293	25036	25125	37096	37096					0.0072359582256922295
SISLTSCKAV	10	Unmodified	_SISLTSCKAV_					0	0	0			REV__ENSG00000243627|ENST00000450895|SMIM34	REV__ENSG00000243627|ENST00000450895|SMIM34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.8512878417969	3	336.85132	1007.53213	0.51592	0.00017379	-0.84668	-0.00028521	-0.33077	-0.00011142	336.85110535824225	22.721	0.21351	22.721	22.633	22.846	0					15	5	4	0	0	0	0.49411	1	7432	7432		50.034	13.587	1	1293100	+		36642	17703	25037	25126	37097	37097					0.028666769886854127
SISPLDPALG	10	Unmodified	_SISPLDPALG_					0	0	0		ABLIM3|p.P284Lfs*94|1|0.62|ENSG00000173210|chr5:149233259-149233259|C/-|frameshift_variant	ABLIM3|p.P284Lfs*94|1|0.62|ENSG00000173210|chr5:149233259-149233259|C/-|frameshift_variant	ABLIM3|p.P284Lfs*94|1|0.62|ENSG00000173210|chr5:149233259-149233259|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.26556396484375	2	485.266207	968.517862	-0.25107	-0.00012184	-0.093981	-4.5606E-05	-0.34505	-0.00016744	485.26615216786826	31.073	0.45705	31.073	30.946	31.403	0					37	12	5	0	0	0	0.51121	1	10634	10634		44.117	0	1	4340600			36643	25	25038	25127	37098	37098					0.0323434783203993
SISQVLNKK	9	Unmodified	_SISQVLNKK_					0	0	0		ENST00000330689.5_1_3:122134566-122134782:-|nuORF	ENST00000330689.5_1_3:122134566-122134782:-|nuORF	ENST00000330689.5_1_3:122134566-122134782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.80853271484375	2	508.808574	1015.60259	-0.43521	-0.00022144	0.66557	0.00033865	0.23036	0.00011721	508.8089517664394	22.594	0.076057	22.594	22.554	22.63	0					4	2	2	0	0	0	0.19605	1	6679	6679		62.107	3.3255	1	89010			36644	8672	25039	25128	37099	37099					0.09541718368654983
SISQVLNKK	9	Unmodified	_SISQVLNKK_					0	0	0		ENST00000330689.5_1_3:122134566-122134782:-|nuORF	ENST00000330689.5_1_3:122134566-122134782:-|nuORF	ENST00000330689.5_1_3:122134566-122134782:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8085632324219	2	508.808574	1015.60259	-0.39776	-0.00020239	0.35197	0.00017909	-0.045791	-2.3299E-05	508.8086601233316	22.785	0.11727	22.785	22.728	22.845	0					6	2	3	0	0	0	0.010494	1	7771	7771		139.97	32.963	1	477640			36645	8672	25039	25128	37100	37100					0.09541718368654983
SISRSLFL	8	Unmodified	_SISRSLFL_					0	0	0			REV__ENSG00000149201|ENST00000445632|CCDC81	REV__ENSG00000149201|ENST00000445632|CCDC81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2697448730469	2	461.77146	921.528367	0.72126	0.00033306	-3.5697	-0.0016484	-2.8484	-0.0013153	461.77075926486657	36.011	0.50426	36.011	35.787	36.292	0					43	15	4	0	0	0	0.63077	1	14020	14020		44.117	0	1	731690	+		36646	15407	25040	25129	37101	37101					0.064463752771303
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.75775146484375	2	458.758549	915.502546	0.065582	3.0086E-05	-0.57384	-0.00026326	-0.50826	-0.00023317	458.75830817661864	21.137	0.44083	21.137	21.028	21.469	0					23	13	3	0	0	0	0.19605	1	5755	5755		62.107	7.3311	1	1542400			36647	981	25041	25130	37102	37102					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7582092285156	2	458.758549	915.502546	-0.41657	-0.00019111	-0.16857	-7.7335E-05	-0.58514	-0.00026844	458.75843438822454	21.17	0.29978	21.17	21.017	21.317	0					24	8	4	0	0	0	0.014688	1	5758	5758		131.03	34.841	1	2493400			36648	981	25041	25130	37103	37103					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7585754394531	2	458.758549	915.502546	-0.65519	-0.00030057	0.36977	0.00016964	-0.28541	-0.00013094	458.75872113705356	21.47	0.52786	21.47	21.34	21.867	0					30	12	4	0	0	0	0.0086566	1	6813	6813		143.89	39.14	1	17439000			36649	981	25041	25130	37104	37104					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7582702636719	2	458.758549	915.502546	-0.95841	-0.00043968	0.41204	0.00018903	-0.54638	-0.00025065	458.7587306976182	21.192	0.45859	21.192	21.032	21.491	0					42	14	5	0	0	0	0.014688	1	6019	6019		131.03	45.871	1	6161500			36650	981	25041	25130	37105	37105					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7586364746094	2	458.758549	915.502546	0.72215	0.00033129	-1.489	-0.0006831	-0.76687	-0.00035181	458.7580267123069	21.366	1.2559	21.366	20.863	22.119	0					44	25	4	0	0	0	0.0051608	1	7062	7062		157.33	49.242	1	40149000			36651	981	25041	25130	37106	37106					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7583312988281	2	458.758549	915.502546	0.07888	3.6187E-05	-0.49123	-0.00022535	-0.41235	-0.00018917	458.75828095467193	21.253	0.39149	21.253	21.108	21.499	0					22	8	4	0	0	0	0.0086566	1	6137	6137		143.89	50.691	1	4907200			36652	981	25041	25130	37107	37107					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.75836181640625	2	458.758549	915.502546	0.88018	0.00040379	-1.5676	-0.00071917	-0.68746	-0.00031538	458.75793539649294	21.378	0.96809	21.378	21.222	22.19	0					48	19	5	0	0	0	0.014688	1	6936	6936		131.03	34.841	1	29983000			36653	981	25041	25130	37108	37108					0.041414810348555875
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.74237060546875	2	450.742899	899.471246	0.018662	8.4118E-06	-0.5241	-0.00023623	-0.50544	-0.00022782	450.74268273496307	18.136	0.40508	18.136	17.841	18.246	0					18	12	2	0	0	0	0.44593	1	4423	4423		37.812	0.65241	1	91147			36654	4072	25042	25131	37109	37109					0.017489080007635494
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7425537109375	2	450.742899	899.471246	0.64313	0.00028989	-1.3349	-0.00060169	-0.69176	-0.00031181	450.74238518758307	18.437	0.57521	18.437	18.037	18.612	0					29	13	3	0	0	0	0.13267	1	5362	5362		71.877	5.4482	1	534610			36655	4072	25042	25131	37110	37110					0.017489080007635494
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.74267578125	2	450.742899	899.471246	-1.1873	-0.00053515	0.10643	4.7972E-05	-1.0808	-0.00048717	450.7431302628474	18.146	0.42138	18.146	17.869	18.29	0					23	13	2	0	0	0	0.33044	1	4679	4679		47.657	0	1	83164			36656	4072	25042	25131	37111	37111					0.017489080007635494
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7424011230469	2	450.742899	899.471246	-0.17028	-7.6752E-05	-0.23286	-0.00010496	-0.40314	-0.00018171	450.7427968116766	18.191	0.35873	18.191	17.955	18.314	0					14	8	2	0	0	0	0.27249	1	4694	4694		52.937	12.159	1	96708			36657	4072	25042	25131	37112	37112					0.017489080007635494
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.74310302734375	2	450.742899	899.471246	-0.40384	-0.00018203	0.12652	5.7028E-05	-0.27732	-0.000125	450.74295821323113	18.341	0.5112	18.341	18.027	18.538	0					20	10	3	0	0	0	0.12239	1	5480	5480		74.255	10.949	1	422440			36658	4072	25042	25131	37113	37113					0.017489080007635494
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.7425842285156	2	450.742899	899.471246	0.87616	0.00039492	-2.113	-0.00095241	-1.2368	-0.00055748	450.7422785495657	18.371	0.51205	18.371	18.01	18.522	0					24	10	3	0	0	0	0.1424	1	5449	5449		69.628	20.186	1	670350			36659	4072	25042	25131	37114	37114					0.017489080007635494
SISVLPSSK	9	Unmodified	_SISVLPSSK_					0	0	0		ENST00000254351.8_1_2:20400819-20401029:-|nuORF	ENST00000254351.8_1_2:20400819-20401029:-|nuORF	ENST00000254351.8_1_2:20400819-20401029:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2682800292969	2	459.26875	916.522947	0.88113	0.00040468	-2.3634	-0.0010854	-1.4823	-0.00068077	459.2674787707418	30.671	0.40753	30.671	30.474	30.881	0					17	8	4	0	0	0	0.034359	1	11393	11393		104.75	6.1646	1	1282400			36660	8253	25043	25132	37115	37115					0.06134651694662807
SISVMKALP	9	Oxidation (M)	_SISVM(Oxidation (M))KALP_		SISVM(1)KALP		SISVM(53)KALP	0	0	1			REV__ENST00000355072.9_1_4:3244305-3244500:+|nuORF	REV__ENST00000355072.9_1_4:3244305-3244500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.27288818359375	2	481.272978	960.531403	0.10856	5.2249E-05	0.38667	0.00018609	0.49523	0.00023834	481.2731942368875	36.924	0.3241	36.924	36.801	37.125	0					22	14	2	0	0	0	0.26904	1	13193	13193		53.351	16.192	1	86598	+		36661	18507	25044	25133	37116	37116		691			0.049558823396409935
SISVTKITK	9	Unmodified	_SISVTKITK_					0	0	0		ENST00000459914.1_1_1:154247547-154248174:+|nuORF;nc|ENSG00000143575|O00165-5|HAX1;nc|ENSG00000143575|O00165-3|HAX1;ENSG00000143575|ENST00000328703|HAX1;nc|ENSG00000143575|O00165-2|HAX1;ENST00000477780.2_1_1:154247547-154247742:+|nuORF;ENST00000492550.1_1_1:154246365-154247742:+|nuORF	ENST00000459914.1_1_1:154247547-154248174:+|nuORF	ENST00000459914.1_1_1:154247547-154248174:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7605895996094	2	488.8055	975.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.367	1	18.367	17.867	18.867	0								0	0	0	0.29356	1	4779	4779		36.447	5.9431	1				36662	4568	25045	25134	37117	37117					0.1076720013712702
SISVVRCVE	9	Unmodified	_SISVVRCVE_					0	0	0		IL4R|p.E684Kfs*3|1|0.54|ENSG00000077238|chr16:27363398-27363398|G/-|frameshift_variant;nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	IL4R|p.E684Kfs*3|1|0.54|ENSG00000077238|chr16:27363398-27363398|G/-|frameshift_variant	IL4R|p.E684Kfs*3|1|0.54|ENSG00000077238|chr16:27363398-27363398|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2672119140625	2	496.265684	990.516816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.186	1	14.186	13.686	14.686	0								0	0	0	0.3119	1	3624	3624		32.812	0.85756	1				36663	1578	25046	25135	37118	37118					0.021178101914983927
SISYEGFNI	9	Unmodified	_SISYEGFNI_					0	0	0		nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.G3063Rfs*5|1|0.06|ENSG00000164796|chr8:112287208-112287209|-/G|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;CSMD1|p.P1459Qfs*24|1|0.09|ENSG00000183117|chr8:3223840-3223840|G/-|frameshift_variant;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;CSMD3|p.L2190Yfs*46|1|0.29|ENSG00000164796|chr8:112341560-112341560|A/-|frameshift_variant;CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1	nc|ENSG00000164796|Q7Z407-2|CSMD3	nc|ENSG00000164796|Q7Z407-2|CSMD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2501220703125	2	515.248015	1028.48148	4.4893	0.0023131	-1.0737	-0.00055323	3.4156	0.0017599	515.247574235043	28.694	0.10532	28.694	28.653	28.758	0					5	4	2	0	0	0	0.42902	1	9275	9275		39.253	3.6345	1	44095			36664	11620	25047	25136	37119	37119					-0.03162529064661612
SITAKAKK	8	Unmodified	_SITAKAKK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.7737731933594	2	423.774003	845.533452	0.87686	0.00037159	-1.5672	-0.00066413	-0.69032	-0.00029254	423.7733982137191	11.654	0.09599	11.654	11.61	11.706	0					4	2	2	0	0	0	0.28427	1	2449	2449		87.754	24.448	1	315560			36665	6444	25048	25137	37120	37120					0.10450679139751173
SITANIWK	8	Unmodified	_SITANIWK_					0	0	0			REV__ENSG00000189099|ENST00000455694|PRSS48	REV__ENSG00000189099|ENST00000455694|PRSS48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7651672363281	2	466.763635	931.512717	4.0302	0.0018811	-0.91781	-0.0004284	3.1124	0.0014527	466.76321072741547	27.631	0.163	27.631	27.561	27.724	0					10	5	2	0	0	0	0.6088	1	8831	8831		47.657	12.039	1	98366	+		36666	17211	25049	25138	37121	37121					0.044220887600772585
SITFRGKR	8	Unmodified	_SITFRGKR_					0	0	0			REV__nc|ENSG00000211958|A0A0C4DH36|IGHV3-38	REV__nc|ENSG00000211958|A0A0C4DH36|IGHV3-38	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.193603515625	3	322.194409	963.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.845	1	27.845	27.345	28.345	0								0	0	0	1.7419	1	8918	8918		17.365	1.7232	1		+		36667	21206	25050	25139	37122	37122					0.07816002119852783
SITGFFQRK	9	Unmodified	_SITGFFQRK_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000530163.1_1_11:74340223-74351808:+|nuORF;nc|ENSG00000077514|Q15054-3|POLD3;nc|ENSG00000077514|Q15054-2|POLD3	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.3011474609375	2	542.300916	1082.58728	0.30981	0.00016801	0.39076	0.00021191	0.70057	0.00037992	542.301041079364	33.217	0.35669	33.217	33.141	33.497	0					20	9	3	0	0	0	0.047855	1	12255	12255		79.713	28.377	1	640500			36668	1586	25051	25140	37123	37123					0.04928851571457926
SITGFFQRK	9	Unmodified	_SITGFFQRK_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000530163.1_1_11:74340223-74351808:+|nuORF;nc|ENSG00000077514|Q15054-3|POLD3;nc|ENSG00000077514|Q15054-2|POLD3	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.3013916015625	2	542.300916	1082.58728	0.31638	0.00017157	0.46452	0.00025191	0.78089	0.00042348	542.30123766826	33.213	0.26349	33.213	33.124	33.388	0					15	6	3	0	0	0	0.070005	1	12683	12683		71.877	20.542	1	408220			36669	1586	25051	25140	37124	37124					0.04928851571457926
SITKTASYR	9	Unmodified	_SITKTASYR_					0	0	0			REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.8573303222656	3	342.857463	1025.55056	0.67786	0.00023241	-0.94125	-0.00032272	-0.26339	-9.0307E-05	342.85709357755957	20.485	0.29359	20.485	20.241	20.535	0					8	6	2	0	0	0	0.61124	1	6374	6374		24.519	0	1	745490	+		36670	21140	25052	25141	37125	37125					0.038805549548897034
SITLQVEAV	9	Unmodified	_SITLQVEAV_					0	0	0		nc|ENSG00000101639|Q8TEP8-2|CEP192;CEP192|p.K1891Nfs*8|1|0.19|ENSG00000101639|chr18:13087068-13087068|A/-|frameshift_variant;nc|ENSG00000101639|Q8TEP8-1|CEP192;CEP192|p.R2464Kfs*5|1|0.13|ENSG00000101639|chr18:13116476-13116477|-/AAATCCA|frameshift_variant;ENSG00000101639|ENST00000506447|CEP192;CEP192|p.F750Sfs*4|1|0.45|ENSG00000101639|chr18:13049038-13049039|TT/-|frameshift_variant;CEP192|p.T788Qfs*40|1|0.32|ENSG00000101639|chr18:13049147-13049147|A/-|frameshift_variant;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;CEP192|p.D878Cfs*11|1|0.05|ENSG00000101639|chr18:13049422-13049423|-/TGTTCTTTGG|frameshift_variant;CEP192|p.N1674Kfs*6|1|0.25|ENSG00000101639|chr18:13069142-13069143|-/A|frameshift_variant	nc|ENSG00000101639|Q8TEP8-2|CEP192	nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.27435302734375	2	480.274032	958.533512	-0.18195	-8.7384E-05	-0.15819	-7.5975E-05	-0.34014	-0.00016336	480.27406495160164	33.397	0.20825	33.397	33.248	33.456	0					13	5	3	0	0	0	0.30841	1	12346	12346		49.536	0	1	136370			36671	482	25053	25142	37126	37126					0.05258634349092972
SITNWPSINN	10	Unmodified	_SITNWPSINN_					0	0	0			REV__RASEF|p.G379W|1|0.09|ENSG00000165105|chr9:83004565-83004565|C/A|missense_variant	REV__RASEF|p.G379W|1|0.09|ENSG00000165105|chr9:83004565-83004565|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.2847290039062	2	573.28292	1144.55129	3.3611	0.0019269	-0.069802	-4.0016E-05	3.2913	0.0018869	573.283020144083	26.602	0.42237	26.602	26.366	26.788	0					26	8	4	0	0	0	0.52275	1	9445	9445		42.864	1.4377	1	656070	+		36672	21445	25054	25143	37127	37127					-0.015206503960143891
SITRLAHDMMT	11	Unmodified	_SITRLAHDMMT_					0	0	0			REV__ENST00000382938.3_1_15:29363239-29394119:+|nuORF	REV__ENST00000382938.3_1_15:29363239-29394119:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	638.314208984375	2	638.31284	1274.61113	3.006	0.0019187	-0.36154	-0.00023078	2.6444	0.001688	638.3125453658673	23.754	0.96186	23.754	23.65	24.611	0					64	19	5	0	0	0	0.65907	1	8090	8090		31.53	1.2121	1	4925200	+		36673	12181	25055	25144	37128	37128					-0.015194190486909065
SITRQFTK	8	Unmodified	_SITRQFTK_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7801208496094	2	490.779816	979.545079	-0.13612	-6.6806E-05	-0.23043	-0.00011309	-0.36655	-0.00017989	490.7796456546792	24.067	0.21297	24.067	23.986	24.199	0					13	6	3	0	0	0	0.74405	1	7044	7044		27.882	27.882	1	246170	+		36674	15809	25056	25145	37129	37129					0.05448876163097793
SITSEVFNK	9	Unmodified	_SITSEVFNK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;ENST00000556217.5_1_14:21837875-21852161:-|nuORF;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7693481445312	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.838	1	33.838	33.338	34.338	0								0	0	0	0.24544	1	12553	12553		44.377	6.5657	1				36675	1870	25057	25146	37130	37130					0.01285446343717922
SITSEVFNK	9	Unmodified	_SITSEVFNK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;ENST00000556217.5_1_14:21837875-21852161:-|nuORF;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7693481445312	2	512.769114	1023.52368	1.2694	0.0006509	1.4719	0.00075475	2.7413	0.0014057	512.7698221998871	34.053	0.69901	34.053	33.646	34.345	0					24	17	3	0	0	0	0.078509	1	12979	12979		85.161	2.9203	1	598060			36676	1870	25057	25146	37131	37131					0.01285446343717922
SITSSPGSK	9	Unmodified	_SITSSPGSK_					0	0	0			REV__nc|ENSG00000168658|Q502W6-8|VWA3B	REV__nc|ENSG00000168658|Q502W6-8|VWA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.2269592285156	2	432.227082	862.439611	0.74562	0.00032228	-1.1678	-0.00050476	-0.4222	-0.00018249	432.22663895798485	17.226	0.16959	17.226	17.145	17.314	0					8	4	3	0	0	0	0.25716	1	4833	4833		54.776	3.2486	1	573380	+		36677	16270	25058	25147	37132	37132					0.002889152468242173
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.29302978515625	2	498.292225	994.569897	1.5414	0.00076807	-0.44391	-0.0002212	1.0975	0.00054687	498.2920343064577	39.088	0.092026	39.088	39.035	39.127	0					8	5	2	0	0	0	0.3269	1	12715	12715		47.96	11.513	1	52916			36678	7354;23071	25059	25148	37133	37133					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2919616699219	2	498.292225	994.569897	0.23156	0.00011538	-0.48195	-0.00024015	-0.25038	-0.00012476	498.29193658003237	39.069	0.43158	39.069	38.979	39.411	0					76	25	5	0	0	0	0.003936	1	12703	12703		163.15	66.961	1	3566200			36679	7354;23071	25059	25148	37134	37134					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2921142578125	2	498.292225	994.569897	0.56711	0.00028258	-0.29086	-0.00014494	0.27624	0.00013765	498.29208838851554	39.42	0.28033	39.42	39.321	39.602	0					21	10	3	0	0	0	0.015496	1	14988	14988		129.42	62.992	1	426340			36680	7354;23071	25059	25148	37135	37135					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.29229736328125	2	498.292225	994.569897	0.69083	0.00034424	-0.10511	-5.2373E-05	0.58573	0.00029186	498.29232095006967	39.404	0.64213	39.404	39.282	39.924	0					83	24	5	0	0	0	0.0016668	1	14994	14994		176.44	80.254	1	28809000			36681	7354;23071	25059	25148	37136	37136					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2922668457031	2	498.292225	994.569897	-1.1008	-0.00054853	1.3493	0.00067233	0.24844	0.0001238	498.29282604815967	39.159	0.24873	39.159	39.086	39.334	0					30	14	3	0	0	0	0.13726	1	13169	13169		70.816	19.481	1	454970			36682	7354;23071	25059	25148	37137	37137					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.29205322265625	2	498.292225	994.569897	-0.022136	-1.103E-05	0.80388	0.00040056	0.78174	0.00038953	498.2927554676615	39.376	0.61747	39.376	39.257	39.875	0					66	21	5	0	0	0	0.0016668	2	15462	15462;15610		176.44	80.254	1	24736000			36683	7354;23071	25059	25148	37138;37139	37138					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2921447753906	2	498.292225	994.569897	-0.24026	-0.00011972	0.20036	9.9836E-05	-0.039901	-1.9882E-05	498.29223400419727	39.151	0.42372	39.151	39.043	39.467	0					67	22	4	0	0	0	0.0016668	1	13960	13960		176.44	80.254	1	2361000			36684	7354;23071	25059	25148	37140	37140					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2919006347656	2	498.292225	994.569897	0.17451	8.6957E-05	-0.32867	-0.00016377	-0.15416	-7.6816E-05	498.2919945956644	39.145	0.42303	39.145	39.037	39.46	0					63	22	4	0	0	0	0.017421	1	13956	13956		126.24	71.466	1	2735500			36685	7354;23071	25059	25148	37141	37141					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2928161621094	2	498.292225	994.569897	-0.72979	-0.00036365	1.3958	0.0006955	0.66598	0.00033185	498.2931134867395	39.309	0.67906	39.309	39.173	39.852	0					51	15	5	0	0	0	0.0030642	2	15533	15533;15701		168.26	72.068	1	34615000			36686	7354;23071	25059	25148	37142;37143	37142					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.29254150390625	2	498.292225	994.569897	1.0304	0.00051346	-1.0312	-0.00051384	-0.00076687	-3.8213E-07	498.2918057014973	39.34	0.63366	39.34	39.202	39.835	0					50	14	5	0	0	0	0.0030642	2	15525	15525;15695		168.26	83.343	1	30477000			36687	7354;23071	25059	25148	37144;37145	37144					0.07239511245802532
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.30047607421875	2	509.300581	1016.58661	-0.10721	-5.4603E-05	0.16141	8.2208E-05	0.054203	2.7605E-05	509.3006815595712	27.122	0.26391	27.122	27.061	27.325	0					23	10	3	0	0	0	0.020674	1	8315	8315		120.87	13.861	1	792310			36688	9170	25060	25149	37146	37146					0.07898012131761334
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.30059814453125	2	509.300581	1016.58661	-0.017627	-8.9774E-06	-0.0076414	-3.8918E-06	-0.025268	-1.2869E-05	509.3005951846363	27.415	0.38237	27.415	27.282	27.665	0					27	9	5	0	0	0	0.0080613	1	9559	9559		145.16	21.076	1	5495300			36689	9170	25060	25149	37147	37147					0.07898012131761334
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.30120849609375	2	509.300581	1016.58661	-0.51127	-0.00026039	0.85926	0.00043762	0.34799	0.00017723	509.30094500323435	27.168	0.22858	27.168	27.075	27.303	0					19	8	3	0	0	0	0.063171	1	8604	8604		90.601	20.973	1	645340			36690	9170	25060	25149	37148	37148					0.07898012131761334
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3004455566406	2	509.300581	1016.58661	-0.3933	-0.00020031	0.36532	0.00018606	-0.02798	-1.425E-05	509.30062719417685	27.161	0.15642	27.161	27.091	27.247	0					9	5	2	0	0	0	0.032052	1	8613	8613		107.01	32.752	1	242260			36691	9170	25060	25149	37149	37149					0.07898012131761334
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3006896972656	2	509.300581	1016.58661	-0.40533	-0.00020643	0.31224	0.00015902	-0.09309	-4.7411E-05	509.30070066196873	27.397	0.21901	27.397	27.287	27.506	0					12	4	3	0	0	0	0.0049871	1	9908	9908		158.07	33.994	1	1317800			36692	9170	25060	25149	37150	37150					0.07898012131761334
SITYHSSI	8	Unmodified	_SITYHSSI_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.233154296875	2	454.229625	906.444697	0.72115	0.00032757	4.1599	0.0018896	4.8811	0.0022171	454.23168473438517	24.755	0.36356	24.755	24.593	24.957	0					15	7	3	0	0	0	0.32408	1	8689	8689		79.939	3.1651	1	1966400			36693	998	25061	25150	37151	37151					-0.012267808905676247
SIVEDTDVFI	10	Unmodified	_SIVEDTDVFI_					0	0	0			REV__tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	REV__tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.8609924316406	3	379.86065	1136.56012	0.65535	0.00024894	0.21818	8.2876E-05	0.87352	0.00033182	379.86075146302016	26.29	1.4264	26.29	26.185	27.611	0					70	28	5	0	0	0	0.58896	1	9259	9259		32.751	32.751	1	10025000	+		36694	21881	25062	25151	37152	37152					-0.0026972155023941013
SIVELVCK	8	Carbamidomethyl (C)	_SIVELVC(Carbamidomethyl (C))K_	SIVELVC(1)K		SIVELVC(63)K		0	1	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21;ENST00000549689.5_1_12:117612134-117624310:-|nuORF	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.265625	2	474.265153	946.515753	-0.12095	-5.7363E-05	-0.55908	-0.00026515	-0.68003	-0.00032251	474.26501024442575	30.182	0.285	30.182	29.964	30.249	0					15	6	3	0	0	0	0.46905	1	11214	11214		63.306	7.8021	1	160090			36695	3967	25063	25152	37153	37153	169				0.040355958225973154
SIVGIGSALL	10	Unmodified	_SIVGIGSALL_					0	0	0			REV__ENSG00000130748|ENST00000253047|TMEM160	REV__ENSG00000130748|ENST00000253047|TMEM160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2872009277344	2	465.286943	928.559333	0.15785	7.3446E-05	0.05937	2.7624E-05	0.21722	0.00010107	465.28692240174774	32.603	0.18034	32.603	32.475	32.656	0					6	4	2	0	0	0	0.14393	1	11975	11975		87.754	18.127	1	135830	+		36696	14596	25064	25153	37154	37154					0.09219528591370363
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.8216857910156	2	508.82115	1015.62775	1.8212	0.00092669	-0.061003	-3.104E-05	1.7602	0.00089565	508.82099375027326	27.487	0.16658	27.487	27.411	27.577	0					8	5	2	0	0	0	0.047855	1	8482	8482		96.034	39.313	1	146480			36697	9531	25065	25154	37155	37155					0.12055773171232431
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8211364746094	2	508.82115	1015.62775	1.0428	0.00053062	-1.0879	-0.00055354	-0.045053	-2.2924E-05	508.8206418198715	27.771	0.2774	27.771	27.676	27.953	0					16	6	4	0	0	0	0.010427	1	9729	9729		140.11	46.969	1	1092700			36698	9531	25065	25154	37156	37156					0.12055773171232431
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5498046875	3	339.549859	1015.62775	0.66847	0.00022698	-0.64368	-0.00021856	0.024786	8.416E-06	339.54963382335035	27.754	0.18958	27.754	27.706	27.895	0					6	4	2	0	0	0	0.42902	1	9747	9747		54.722	23.193	1	180280			36699	9531	25065	25154	37157	37157					0.12055773171232431
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.821533203125	2	508.82115	1015.62775	3.8847	0.0019766	-2.7826	-0.0014159	1.102	0.00056074	508.81951294906895	27.503	0.21466	27.503	27.449	27.664	0					9	7	2	0	0	0	0.070005	1	8777	8777		88.177	16.299	1	107400			36700	9531	25065	25154	37158	37158					0.12055773171232431
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.82110595703125	2	508.82115	1015.62775	0.20356	0.00010358	-0.17652	-8.9818E-05	0.027041	1.3759E-05	508.82102927687083	27.722	0.31413	27.722	27.617	27.931	0					16	6	4	0	0	0	0.0063888	1	10085	10085		152.06	45.378	1	1128900			36701	9531	25065	25154	37159	37159					0.12055773171232431
SIVKLWEPQ	9	Unmodified	_SIVKLWEPQ_					0	0	0			REV__ENST00000530117.5_1_1:205027631-205031234:+|nuORF	REV__ENST00000530117.5_1_1:205027631-205031234:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3095092773438	2	550.310949	1098.60735	-1.4176	-0.0007801	-1.564	-0.00086067	-2.9815	-0.0016408	550.3099664370264	22.33	0.3264	22.33	22.144	22.471	0					14	7	3	0	0	0	0.10506	1	6621	6621		78.264	14.73	1	196290	+		36702	16966	25066	25155	37160	37160					0.06198602511403806
SIVPSVSG	8	Unmodified	_SIVPSVSG_					0	0	0		IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant;ENSG00000136381|ENST00000258886|IREB2	IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant	IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.21044921875	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.938	1	50.938	50.438	51.438	0								0	0	0	1.7419	1	19012	19012		28.254	4.0515	1				36703	4077	25067	25156	37161	37161					0.01934449052009768
SIVQPKPTY	9	Unmodified	_SIVQPKPTY_					0	0	0			REV__ENSG00000188283|ENST00000684119|ZNF383	REV__ENSG00000188283|ENST00000684119|ZNF383	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7902221679688	2	516.78985	1031.56515	1.5428	0.00079731	-1.1774	-0.00060847	0.36541	0.00018884	516.7894663420524	36.467	1.5159	36.467	35.262	36.778	0					43	30	4	0	0	0	0.42902	1	14165	14165		39.253	12.56	1	412320	+		36704	17164	25068	25157	37162	37162					0.05062627103052364
SIVRLDKGN	9	Unmodified	_SIVRLDKGN_					0	0	0		CELSR2|p.V2171I|1|0.2|ENSG00000143126|chr1:109268888-109268888|G/A|missense_variant	CELSR2|p.V2171I|1|0.2|ENSG00000143126|chr1:109268888-109268888|G/A|missense_variant	CELSR2|p.V2171I|1|0.2|ENSG00000143126|chr1:109268888-109268888|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2904357910156	2	501.290548	1000.56654	-0.11254	-5.6417E-05	-0.3808	-0.00019089	-0.49334	-0.00024731	501.29039391498685	49.911	0.64775	49.911	49.713	50.361	0					45	29	2	0	0	0	0.54081	1	18031	18031		20.947	0	1	75880			36705	470	25069	25158	37163	37163					0.06628261191804086
SIVRSHRQHRH	11	Unmodified	_SIVRSHRQHRH_					0	0	0			REV__ENST00000511235.1_1_5:134303666-134331399:+|nuORF	REV__ENST00000511235.1_1_5:134303666-134331399:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	706.8896484375	2	706.890149	1411.76575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.911	1	35.911	35.411	36.411	0								0	0	0	0.45674	1	12155	12155		17.468	0.75062	1		+		36706	12338	25070	25159	37164	37164					0.07633334263073266
SIVSALKREA	10	Unmodified	_SIVSALKREA_					0	0	0		C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5;C5|p.R1206C|1|0.39|ENSG00000106804|chr9:120980125-120980125|G/A|missense_variant	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.548583984375	3	358.548629	1072.62406	0.72275	0.00025914	-0.91536	-0.0003282	-0.1926	-6.9058E-05	358.54828141309883	19.575	0.15122	19.575	19.481	19.632	0					5	3	2	0	0	0	0.59277	1	5943	5943		35.152	2.3396	1	573240			36707	336	25071	25160	37165	37165					0.09065103397369967
SIVSTFHTI	9	Unmodified	_SIVSTFHTI_					0	0	0			REV__ENST00000251047.5_1_18:56996763-56996880:-|nuORF	REV__ENST00000251047.5_1_18:56996763-56996880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.77606201171875	2	502.7742	1003.53385	0.99178	0.00049864	-1.1703	-0.00058839	-0.17852	-8.9754E-05	503.27390974190337	28.688	0.56258	28.688	28.365	28.927	0					18	11	2	0	0	0	0.1424	1	10496	10496		63.306	0	1	821300	+		36708	17966	25072	25161	37166	37166					0.032220540689422705
SIVTAWAAGAI	11	Unmodified	_SIVTAWAAGAI_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2938842773438	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.068	1	16.068	15.568	16.568	0								0	0	0	0.44646	1	4520	4520		26.693	8.3685	1		+		36709	21962	25073	25162	37167	37167					0.04910029477309763
SIVTAWAAGAI	11	Unmodified	_SIVTAWAAGAI_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2938842773438	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.024	1	16.024	15.524	16.524	0								0	0	0	0.36993	1	4353	4353		42.396	3.1433	1		+		36710	21962	25073	25162	37168	37168					0.04910029477309763
SIVTFTVSIA	10	Unmodified	_SIVTFTVSIA_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2976684570312	2	519.297507	1036.58046	1.4318	0.00074351	-0.69724	-0.00036207	0.73453	0.00038144	519.296986494444	33.73	0.26371	33.73	33.658	33.922	0					27	10	4	0	0	0	0.20011	1	10982	10982		79.451	2.6769	1	522000	+		36711	16647	25074	25163	37169	37169					0.06363493900221329
SIWIIELSM	9	Unmodified	_SIWIIELSM_					0	0	0			REV__ENST00000338733.9_1_3:186282087-186282159:-|nuORF	REV__ENST00000338733.9_1_3:186282087-186282159:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.5318908691406	3	364.531699	1090.57327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.389	1	21.389	20.889	21.889	0								0	0	0	0.35507	1	6956	6956		24.519	0	1		+		36712	18435	25075	25164	37170	37170					0.031604380281578415
SIWRGLRDAW	10	Unmodified	_SIWRGLRDAW_					0	0	0		sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1;sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2;sp|C0H677|UL298_HCMVAProteinUL29/UL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=1SV=1	sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1	sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.8958740234375	3	420.55964	1258.65709	1.0545	0.0004435	2.7183	0.0011432	3.7729	0.0015867	420.8953177430028	39.917	0.23839	39.917	39.825	40.063	0					11	5	3	0	0	0	0.65895	1	15824	15824		27.047	2.8155	1	208670			36713	22433	25076	25165	37171	37171					0.0381073024007037
SIWVPVDEV	9	Unmodified	_SIWVPVDEV_					0	0	0			REV__ENST00000553678.1_1_14:85995020-85995465:+|nuORF	REV__ENST00000553678.1_1_14:85995020-85995465:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2745971679688	2	522.274032	1042.53351	0.40738	0.00021276	-0.23746	-0.00012402	0.16992	8.8745E-05	522.2741738067429	32.37	0.25431	32.37	32.272	32.526	0					24	10	3	0	0	0	0.37197	1	10772	10772		44.117	3.3386	1	364930	+		36714	20225	25077	25166	37172	37172					0.013946343490943036
SIYAEPVWQ	9	Unmodified	_SIYAEPVWQ_					0	0	0		KLHL32|p.Q274E|1|0.29|ENSG00000186231|chr6:97113975-97113975|C/G|missense_variant	KLHL32|p.Q274E|1|0.29|ENSG00000186231|chr6:97113975-97113975|C/G|missense_variant	KLHL32|p.Q274E|1|0.29|ENSG00000186231|chr6:97113975-97113975|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.771728515625	2	546.771657	1091.52876	-1.5018	-0.00082112	-0.72917	-0.00039869	-2.2309	-0.0012198	546.7711970562827	31.88	0.30531	31.88	31.771	32.076	0					16	9	2	0	0	0	0.45358	1	11002	11002		37.159	0.71236	1	98981			36715	11260	25078	25167	37173	37173					-0.013342497936719155
SIYDSKRQSGK	11	Unmodified	_SIYDSKRQSGK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	634.8333740234375	2	634.833308	1267.65206	0.98067	0.00062256	-1.0531	-0.00066854	-0.072414	-4.5971E-05	634.8326621487837	15.447	0.17408	15.447	15.397	15.571	0					7	4	3	0	0	0	0.045505	1	3997	3997		99.788	48.26	1	786130			36716	5378	25079	25168	37174	37174					0.028943815867933154
SIYEIAFQR	9	Unmodified	_SIYEIAFQR_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL;REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.78125	2	563.798206	1125.58186	0.9727	0.00054841	-1.2353	-0.00069645	-0.26258	-0.00014804	563.7963283505343	34.99	0.21754	34.99	34.83	35.048	0					5	4	2	0	0	0	0.51991	1	13457	13457		30.318	2.2362	1	85674	+		36717	21138;16725	25080	25169	37175	37175					0.024091279889717043
SIYITNLL	8	Unmodified	_SIYITNLL_					0	0	0			REV__tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	REV__tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7736511230469	2	468.773668	935.532783	-0.51722	-0.00024246	-0.0081568	-3.8237E-06	-0.52538	-0.00024628	468.7737352323423	36.388	0.26711	36.388	36.329	36.596	0					7	5	2	0	0	0	0.59773	1	14152	14152		49.442	0	1	108770	+		36718	22164	25081	25170	37176	37176					0.06243839700039189
SIYKPGQTVK	10	Unmodified	_SIYKPGQTVK_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.8226318359375	2	560.821681	1119.62881	0.12641	7.0891E-05	1.1025	0.00061829	1.2289	0.00068918	560.8222980568898	20.728	0.16703	20.728	20.626	20.793	0					8	5	2	0	0	0	0.44292	1	5830	5830		51.528	2.0862	1	178500			36719	6584	25082	25171	37177	37177					0.07377987540144204
SIYKPGQTVK	10	Unmodified	_SIYKPGQTVK_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.822265625	2	560.821681	1119.62881	1.8108	0.0010156	-1.0783	-0.00060474	0.73252	0.00041082	560.8208960593038	20.921	0.26408	20.921	20.764	21.028	0					9	5	3	0	0	0	0.25899	1	6870	6870		72.243	17.467	1	738230			36720	6584	25082	25171	37178	37178					0.07377987540144204
SIYKPGQTVK	10	Unmodified	_SIYKPGQTVK_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.8221435546875	2	560.821681	1119.62881	1.0254	0.00057507	-0.037611	-2.1093E-05	0.9878	0.00055398	560.8213884979064	20.823	0.15018	20.823	20.692	20.842	0					6	3	2	0	0	0	0.27065	1	5922	5922		70.816	10.698	1	72861			36721	6584	25082	25171	37179	37179					0.07377987540144204
SIYKYIVKV	9	Unmodified	_SIYKYIVKV_					0	0	0			REV__ENST00000480440.5_1_1:86847891-86851212:-|nuORF	REV__ENST00000480440.5_1_1:86847891-86851212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.56207275390625	3	371.561987	1111.66413	0.92653	0.00034426	-1.0863	-0.00040361	-0.15973	-5.935E-05	371.5616631266841	33.301	0.22545	33.301	33.176	33.402	0					12	5	3	0	0	0	0.44593	1	12749	12749		37.812	7.4938	1	370820	+		36722	19589	25083	25172	37180	37180					0.11276650067952687
SIYLSKTIQ	9	Unmodified	_SIYLSKTIQ_					0	0	0			REV__ENSG00000167065|ENST00000334679|DUSP18	REV__ENSG00000167065|ENST00000334679|DUSP18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.53668212890625	3	351.53773	1051.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.15	1	16.15	15.65	16.65	0								0	0	0	0.31838	1	4559	4559		31.53	5.9558	1		+		36723	16162	25084	25173	37181	37181					0.06762896274517516
SIYPITRTQ	9	Unmodified	_SIYPITRTQ_					0	0	0		ENSG00000169519|ENST00000407364|METTL15;nc|ENSG00000169519|A6NJ78-2|METTL15	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7984619140625	2	539.798206	1077.58186	-0.087096	-4.7014E-05	0.79832	0.00043093	0.71123	0.00038392	539.798851690635	30.78	0.1332	30.78	30.713	30.846	0					7	4	2	0	0	0	0.28897	1	10146	10146		51.193	11.94	1	74762			36724	6169	25085	25174	37182	37182					0.0461712798901317
SIYPMHNLK	9	Unmodified	_SIYPMHNLK_					0	0	0		VRTN|p.R194H|1|0.2|ENSG00000133980|chr14:74357364-74357364|G/A|missense_variant	VRTN|p.R194H|1|0.2|ENSG00000133980|chr14:74357364-74357364|G/A|missense_variant	VRTN|p.R194H|1|0.2|ENSG00000133980|chr14:74357364-74357364|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7890625	2	551.789327	1101.5641	-1.3182	-0.00072738	2.8769	0.0015875	1.5587	0.00086007	551.7903346772121	24.994	0.10486	24.994	24.937	25.042	0					4	2	2	0	0	0	0.2873	1	7892	7892		51.335	12.083	1	58916			36725	23105	25086	25175	37183	37183					0.017380894624920984
SIYQITFMNS	10	Unmodified	_SIYQITFMNS_					0	0	0		tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.791748046875	2	602.289356	1202.56416	0.14445	8.7003E-05	0.56393	0.00033965	0.70838	0.00042665	602.288897339224	20.504	0.06579	20.504	20.454	20.52	0					4	2	2	0	0	0	0.74808	1	5498	5498		13.454	0	1	56649			36726	23010	25087	25176	37184	37184					-0.029019553281386834
SIYRPSKNLDK	11	Unmodified	_SIYRPSKNLDK_					0	0	0		ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	660.86767578125	2	660.867151	1319.71975	-1.0491	-0.00069333	0.82798	0.00054718	-0.22115	-0.00014615	660.8679041629888	20.305	0.21959	20.305	20.145	20.364	0					7	4	2	0	0	0	0.29048	1	6575	6575		63.694	20.83	1	187460			36727	2048	25088	25177	37185	37185					0.07267831517606282
SIYSVSPEANK	11	Unmodified	_SIYSVSPEANK_					0	0	0		ENSG00000068784|ENST00000263736|SRBD1;nc|ENSG00000068784|Q8N5C6-2|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant;ENST00000475073.5_1_2:45647031-45774722:-|nuORF	ENSG00000068784|ENST00000263736|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	597.8043212890625	2	597.803685	1193.59282	0.13648	8.1587E-05	0.14156	8.4627E-05	0.27804	0.00016621	597.8039043937393	28.705	0.24443	28.705	28.635	28.88	0					14	9	2	0	0	0	0.38515	1	8990	8990		53.089	1.5612	1	71605			36728	1426	25089	25178	37186	37186					0.003764855726103633
SIYTHFAL	8	Unmodified	_SIYTHFAL_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2486572265625	2	476.25036	950.486168	-1.534	-0.00073057	-2.2514	-0.0010722	-3.7854	-0.0018028	476.2495558312813	28.459	0.12197	28.459	28.377	28.499	0					8	4	2	0	0	0	0.59411	1	9174	9174		50.025	2.1089	1	100050	+		36729	15590	25090	25179	37187	37187					0.00894399868752771
SIYTNNFNDE	10	Unmodified	_SIYTNNFNDE_					0	0	0			REV__ENST00000495720.5_1_1:153958496-153958682:-|nuORF	REV__ENST00000495720.5_1_1:153958496-153958682:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	608.7581176757812	2	608.759475	1215.5044	-0.64071	-0.00039004	-2.1313	-0.0012974	-2.772	-0.0016875	608.758343898994	30.362	0.2532	30.362	30.272	30.526	0					9	6	2	0	0	0	0.59255	1	10947	10947		35.178	1.0057	1	290390	+		36730	15199	25091	25180	37188	37188					-0.09473554737814993
SIYTSTTTIK	10	Unmodified	_SIYTSTTTIK_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.20489501953125	3	372.204528	1113.59175	0.77565	0.0002887	-0.20996	-7.8148E-05	0.56569	0.00021055	372.20438078839607	18.413	0.56165	18.413	18.206	18.768	0					24	11	4	0	0	0	0.46215	1	5517	5517		53.089	7.1808	1	4682200	+		36731	15637	25092	25181	37189	37189					0.03950271203689226
SKACIPYLK	9	Unmodified	_SKACIPYLK_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7893981933594	2	511.788795	1021.56304	1.4099	0.00072155	-1.3013	-0.00066598	0.10857	5.5567E-05	511.7881415418643	46.356	0.1958	46.356	46.284	46.48	0					20	8	3	0	0	0	0.21263	1	18539	18539		60.118	5.3419	1	386950			36732	3117	25093	25182	37190	37190					0.05311875093570961
SKATEEKEKP	10	Unmodified	_SKATEEKEKP_					0	0	0			REV__nc|ENSG00000130305|Q96P11-4|NSUN5	REV__nc|ENSG00000130305|Q96P11-4|NSUN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	382.87115478515625	3	382.871549	1145.59282	-1.1482	-0.00043962	1.2129	0.00046439	0.064694	2.4769E-05	382.87187047517966	13.901	0.097415	13.901	13.879	13.977	0					6	4	2	0	0	0	0.58189	1	2930	2930		34.087	0	1	106340	+		36733	21017	25094	25183	37191	37191					0.025844855726063543
SKATKLHSQ	9	Unmodified	_SKATKLHSQ_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2;nc|ENSG00000132613|Q765P7-2|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2822265625	2	500.282723	998.550893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.086	1	13.086	12.586	13.586	0								0	0	0	0.3063	1	2606	2606		33.922	4.7516	1				36734	3802	25095	25184	37192	37192					0.051559746747557256
SKAVEPAQV	9	Unmodified	_SKAVEPAQV_					0	0	0			REV__SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	REV__SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7584228515625	2	464.758549	927.502546	-0.48671	-0.0002262	0.095609	4.4435E-05	-0.3911	-0.00018177	464.7584423983112	20.202	0.41656	20.202	20.044	20.46	0					12	8	2	0	0	0	0.43488	1	6391	6391		38.754	2.3069	1	237610	+		36735	15648	25096	25185	37193	37193					0.035894810348509054
SKAYNIEQ	8	Unmodified	_SKAYNIEQ_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7399597167969	2	476.740357	951.46616	0.57875	0.00027591	-2.493	-0.0011885	-1.9142	-0.00091259	476.7388232052364	27.521	0.13846	27.521	27.472	27.61	0					5	3	2	0	0	0	0.72524	1	9633	9633		30.318	1.1477	1	64268	+		36736	13022	25097	25186	37194	37194					-0.011513958618706965
SKCLRKIDKT	10	Carbamidomethyl (C)	_SKC(Carbamidomethyl (C))LRKIDKT_	SKC(1)LRKIDKT		SKC(88)LRKIDKT		0	1	0			REV__nc|ENSG00000183690|Q5JST6-2|EFHC2	REV__nc|ENSG00000183690|Q5JST6-2|EFHC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	624.8602294921875	2	624.858272	1247.70199	3.1707	0.0019812	-0.11258	-7.0345E-05	3.0581	0.0019109	624.8581636634104	21.764	0.17011	21.764	21.653	21.823	0					9	3	3	0	0	0	0.14426	1	7145	7145		87.696	18.069	1	1018700	+		36737	16946	25098	25187	37195	37195	602				0.08804792991077193
SKDDRERI	8	Unmodified	_SKDDRERI_					0	0	0		ENST00000239882.6_2_13:41556404-41593421:-|nuORF	ENST00000239882.6_2_13:41556404-41593421:-|nuORF	ENST00000239882.6_2_13:41556404-41593421:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.76715087890625	2	509.767437	1017.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.11	1	13.11	12.61	13.61	0								0	0	0	1.7419	1	2911	2911		14.137	1.9303	1				36738	8214	25099	25188	37196	37196					0.0122619628970142
SKDKSSKKH	9	Unmodified	_SKDKSSKKH_					0	0	0		RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;ENSG00000111011|ENST00000331738|RSRC2;ENST00000527399.3_1_12:122999727-123005058:-|nuORF	RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant	RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.795654296875	2	522.793455	1043.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.835	1	21.835	21.335	22.335	0								0	0	0	0.19847	1	6077	6077		51.193	10.415	1				36739	22363	25100	25189	37197	37197					0.05231359703475391
SKDPLVCNE	9	Unmodified	_SKDPLVCNE_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7391662597656	2	502.739499	1003.46445	-0.49564	-0.00024918	0.58961	0.00029642	0.093971	4.7243E-05	502.7397807094494	33.708	0.32418	33.708	33.6	33.924	0					13	7	2	0	0	0	0.36892	1	12850	12850		44.377	1.5129	1	321800	+		36740	17020	25101	25190	37198	37198					-0.03714772942112177
SKDTKLGSK	9	Unmodified	_SKDTKLGSK_					0	0	0			REV__ADRA1A|p.D228N|1|0.13|ENSG00000120907|chr8:26864288-26864288|C/T|missense_variant	REV__ADRA1A|p.D228N|1|0.13|ENSG00000120907|chr8:26864288-26864288|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2770690917969	2	482.277106	962.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.661	1	11.661	11.161	12.161	0								0	0	0	0.37786	1	2310	2310		17.468	0.10304	1		+		36741	12095	25102	25191	37199	37199					0.056891525806122445
SKDTSGKPV	9	Unmodified	_SKDTSGKPV_					0	0	0		PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant;ENSG00000133056|ENST00000684373|PIK3C2B	PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7479248046875	2	459.748182	917.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.837	1	18.837	18.337	19.337	0								0	0	0	0.27025	1	5582	5582		40.778	1.5253	1				36742	3833	25103	25192	37200	37200					0.019768906551917098
SKEGHHLQ	8	Unmodified	_SKEGHHLQ_					0	0	0			REV__SEMG2|p.E320Dfs*17|1|0.04|ENSG00000124157|chr20:45222591-45222592|-/CGGGTAT|frameshift_variant	REV__SEMG2|p.E320Dfs*17|1|0.04|ENSG00000124157|chr20:45222591-45222592|-/CGGGTAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.23797607421875	2	468.238316	934.462078	-0.64374	-0.00030142	-0.10376	-4.8584E-05	-0.7475	-0.00035001	468.23823957070067	12.268	0.29648	12.268	12.175	12.471	0					24	10	3	0	0	0	0.27242	1	2537	2537		143.89	7.6186	1	1266900	+		36743	14379	25104	25193	37201	37201					-0.007774405649001892
SKEIIIQK	8	Unmodified	_SKEIIIQK_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.8000793457031	2	479.800217	957.585882	-0.20572	-9.8703E-05	-0.3154	-0.00015133	-0.52112	-0.00025003	479.8000881696639	23.394	0.27128	23.394	23.294	23.565	0					17	6	4	0	0	0	0.074162	1	7727	7727		162.25	4.9234	1	2461800			36744	7315	25105	25194	37202	37202					0.10539217482710228
SKEIIIQK	8	Unmodified	_SKEIIIQK_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7998352050781	2	479.800217	957.585882	2.3016	0.0011043	-2.3442	-0.0011248	-0.042626	-2.0452E-05	479.79906403618986	23.31	0.31713	23.31	23.201	23.518	0					15	6	4	0	0	0	0.061863	1	7875	7875		190.52	9.5919	1	1966800			36745	7315	25105	25194	37203	37203					0.10539217482710228
SKEPQLKGI	9	Unmodified	_SKEPQLKGI_					0	0	0		ENSG00000114279|ENST00000445105|FGF12;nc|ENSG00000129682|Q92913-4|FGF13	ENSG00000114279|ENST00000445105|FGF12	ENSG00000114279|ENST00000445105|FGF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.29510498046875	2	500.295299	998.576045	-0.16459	-8.2342E-05	-0.61978	-0.00031007	-0.78436	-0.00039241	500.2953493662351	32.288	1.0524	32.288	32.005	33.057	0					34	26	2	0	0	0	0.41113	1	11929	11929		40.778	2.9666	1	139930			36746	2839	25106	25195	37204	37204					0.07670029477333173
SKEVKKPSH	9	Unmodified	_SKEVKKPSH_					0	0	0		ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.2012634277344	3	347.201341	1038.58219	1.4604	0.00050705	-1.629	-0.0005656	-0.16864	-5.8551E-05	347.2008026714998	17.157	0.32205	17.157	16.996	17.318	0					11	6	4	0	0	0	0.4966	1	5061	5061		32.751	7.1765	1	705440			36747	7473	25107	25196	37205	37205					0.06444547708861137
SKGDFEKLQQ	10	Unmodified	_SKGDFEKLQQ_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1;REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	393.8717041015625	3	393.87166	1178.59315	-0.66041	-0.00026012	0.77068	0.00030355	0.11027	4.3433E-05	393.8720501421874	23.49	0.46257	23.49	23.284	23.747	0					9	4	3	0	0	0	0.58189	1	7988	7988		27.644	0	1	416040	+		36748	13478;21153	25108	25197	37206	37206					0.010999052924944408
SKGLTSALSQ	10	Unmodified	_SKGLTSALSQ_					0	0	0		PI4KB|p.R270Gfs*14|1|0.35|ENSG00000143393|chr1:151315674-151315674|T/-|frameshift_variant	PI4KB|p.R270Gfs*14|1|0.35|ENSG00000143393|chr1:151315674-151315674|T/-|frameshift_variant	PI4KB|p.R270Gfs*14|1|0.35|ENSG00000143393|chr1:151315674-151315674|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2744445800781	2	496.274564	990.534574	0.12433	6.17E-05	-0.070332	-3.4904E-05	0.053994	2.6796E-05	496.2746532019195	22.119	0.22791	22.119	21.943	22.17	0					7	5	2	0	0	0	0.63019	1	6549	6549		30.569	3.876	1	183830			36749	11930	25109	25198	37207	37207					0.03892848717987363
SKGSIYVW	8	Unmodified	_SKGSIYVW_					0	0	0		PCSK2|p.G299S|1|0.48|ENSG00000125851|chr20:17453751-17453751|G/A|missense_variant	PCSK2|p.G299S|1|0.48|ENSG00000125851|chr20:17453751-17453751|G/A|missense_variant	PCSK2|p.G299S|1|0.48|ENSG00000125851|chr20:17453751-17453751|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.2496337890625	2	470.25036	938.486168	-0.43048	-0.00020243	-0.61211	-0.00028785	-1.0426	-0.00049028	470.24999283521464	36.919	0.16949	36.919	36.846	37.015	0					13	8	2	0	0	0	0.7126	1	12089	12089		31.955	5.1588	1	61638			36750	11913	25110	25199	37208	37208					0.01446399868757453
SKGVRVPV	8	Unmodified	_SKGVRVPV_					0	0	0		MYT1L|p.K588Sfs*24|1|0.23|ENSG00000186487|chr2:1910294-1910294|T/-|frameshift_variant;MYT1L|p.K877Rfs*3|1|0.06|ENSG00000186487|chr2:1887500-1887500|T/-|frameshift_variant;nc|ENSG00000186487|Q9UL68-4|MYT1L;ENSG00000186487|ENST00000647738|MYT1L	MYT1L|p.K588Sfs*24|1|0.23|ENSG00000186487|chr2:1910294-1910294|T/-|frameshift_variant	MYT1L|p.K588Sfs*24|1|0.23|ENSG00000186487|chr2:1910294-1910294|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2662353515625	2	421.266345	840.518136	-0.19898	-8.3822E-05	-0.30896	-0.00013015	-0.50793	-0.00021397	421.2662584411691	20.555	0.29849	20.555	20.4	20.698	0					15	9	2	0	0	0	0.76283	1	5508	5508		25.45	6.0902	1	358750			36751	7142	25111	25200	37209	37209					0.09149812342559471
SKISALEGLL	10	Unmodified	_SKISALEGLL_					0	0	0		nc|ENSG00000162894|O60667-2|FCMR;nc|ENSG00000162894|O60667-3|FCMR;ENSG00000162894|ENST00000367091|FCMR	nc|ENSG00000162894|O60667-2|FCMR	nc|ENSG00000162894|O60667-2|FCMR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.8111572265625	2	515.810782	1029.60701	1.4371	0.00074129	-0.91767	-0.00047334	0.51947	0.00026795	515.8103099085563	39.022	0.3356	39.022	38.891	39.227	0					28	11	3	0	0	0	0.62612	1	15308	15308		26.063	3.4837	1	393060			36752	5508	25112	25201	37210	37210					0.09339182791586609
SKKAAHSL	8	Unmodified	_SKKAAHSL_					0	0	0		ENST00000358374.3_1_8:127085737-127086436:+|nuORF	ENST00000358374.3_1_8:127085737-127086436:+|nuORF	ENST00000358374.3_1_8:127085737-127086436:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.6949768066406	2	421.248152	840.481751	-0.035796	-1.5079E-05	-0.073217	-3.0842E-05	-0.10901	-4.5922E-05	421.2481628552034	22.119	0.22783	22.119	21.988	22.216	0					9	5	2	0	0	0	0.79983	1	6505	6505		19.997	0.6368	1	141850			36753	8832	25113	25202	37211	37211					0.055129354458472335
SKKGGAGG	8	Unmodified	_SKKGGAGG_					0	0	0		PDCD4|p.P113S|1|0.24|ENSG00000150593|chr10:110881526-110881526|C/T|missense_variant	PDCD4|p.P113S|1|0.24|ENSG00000150593|chr10:110881526-110881526|C/T|missense_variant	PDCD4|p.P113S|1|0.24|ENSG00000150593|chr10:110881526-110881526|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	331.185791015625	2	331.18502	660.355488	0.52402	0.00017355	1.5901	0.00052663	2.1142	0.00070018	331.18543280234985	42.359	0.34905	42.359	42.137	42.486	0					25	18	2	0	0	0	0.77697	1	16047	16047		4.3163	0	1	98969			36754	11916	25114	25203	37212	37212					0.011724289405719901
SKKKHFKY	8	Unmodified	_SKKKHFKY_					0	0	0			REV__ENSG00000138382|ENST00000260953|METTL5	REV__ENSG00000138382|ENST00000260953|METTL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.3140258789062	2	533.313826	1064.6131	-1.2976	-0.00069201	2.1517	0.0011476	0.85417	0.00045554	533.3150928564405	42.779	0.13831	42.779	42.686	42.825	0					15	8	2	0	0	0	0.64144	1	14899	14899		40.573	7.057	1	95765	+		36755	14972	25115	25204	37213	37213					0.08337745813742004
SKKTMSAKQQ	10	Oxidation (M)	_SKKTM(Oxidation (M))SAKQQ_		SKKTM(1)SAKQQ		SKKTM(60)SAKQQ	0	0	1			REV__LRRC7|p.V1027Sfs*5|2|0.41|ENSG00000033122|chr1:70039009-70039010|-/A|frameshift_variant	REV__LRRC7|p.V1027Sfs*5|2|0.41|ENSG00000033122|chr1:70039009-70039010|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.8053588867188	2	576.805705	1151.59686	0.018929	1.0918E-05	-0.60991	-0.0003518	-0.59098	-0.00034088	576.8053534899342	17.531	0.13555	17.531	17.469	17.604	0					9	4	3	0	0	0	0.36476	1	4400	4400		60.118	60.118	1	306270	+		36756	20848	25116	25205	37214	37214		745			0.02712251794673648
SKKTSTTKRS	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SKKTSTTKRS_					1	0	0			REV__ENST00000530153.5_1_11:65378293-65378380:-|nuORF	REV__ENST00000530153.5_1_11:65378293-65378380:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.3331298828125	2	583.330402	1164.64625	3.2251	0.0018813	1.4089	0.00082184	4.634	0.0027031	583.331248522568	16.722	0.11395	16.722	16.666	16.78	0					4	2	2	0	0	0	0.42939	1	4704	4704		56.632	56.632	1	1236200	+		36757	20041	25117	25206	37215	37215					0.07051283075156789
SKLFVHHR	8	Unmodified	_SKLFVHHR_					0	0	0		ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.296142578125	2	512.295968	1022.57738	-0.14954	-7.6608E-05	-0.96145	-0.00049255	-1.111	-0.00056915	512.7968810539379	22.129	0.10913	22.129	22.059	22.168	0					5	3	2	0	0	0	0.78142	1	6457	6457		23.042	0	1	65196			36758	7881	25118	25207	37216	37216					0.0669970835674576
SKLHSLEYLD	10	Unmodified	_SKLHSLEYLD_					0	0	0		nc|ENSG00000132000|Q6PEZ8-2|PODNL1;nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1;ENSG00000132000|ENST00000588872|PODNL1	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.2121276855469	3	402.211794	1203.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.89	1	48.89	48.39	49.39	0								0	0	0	0.3963	1	17720	17720		31.634	4.587	1				36759	3755	25119	25208	37217	37217					0.01989075952269559
SKLPKAEI	8	Unmodified	_SKLPKAEI_					0	0	0			REV__ENSG00000174225|ENST00000450049|ARL13A	REV__ENSG00000174225|ENST00000450049|ARL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2734680175781	2	443.273835	884.533118	0.76126	0.00033745	-1.4644	-0.00064911	-0.7031	-0.00031167	443.2731996897281	36.969	0.30772	36.969	36.812	37.12	0					9	6	2	0	0	0	0.57171	1	14405	14405		52.937	3.4952	1	253420	+		36760	16554	25120	25209	37218	37218					0.08623259419891838
SKLSKVLVQ	9	Unmodified	_SKLSKVLVQ_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.5497741699219	3	334.54997	1000.62808	0.25149	8.4137E-05	-0.25371	-8.488E-05	-0.0022223	-7.4348E-07	334.5498203863745	18.207	0.082035	18.207	18.154	18.236	0					6	3	2	0	0	0	0.54267	1	4491	4491		21.686	0	1	261600	+		36761	12745	25121	25210	37219	37219					0.12779192891082403
SKLTDNKLEF	10	Unmodified	_SKLTDNKLEF_					0	0	0			REV__ENST00000551312.6_2_15:25227174-25227288:+|nuORF	REV__ENST00000551312.6_2_15:25227174-25227288:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.8225708007812	2	597.821878	1193.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.184	1	18.184	17.684	18.684	0								0	0	0	0.41967	1	4696	4696		24.519	0	1		+		36762	20202	25122	25211	37220	37220					0.04013362469322601
SKLTLFGNK	9	Unmodified	_SKLTLFGNK_					0	0	0		ENST00000496559.6_1_3:66430689-66456253:-|nuORF;LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant;ENSG00000144749|ENST00000273261|LRIG1	ENST00000496559.6_1_3:66430689-66456253:-|nuORF	ENST00000496559.6_1_3:66430689-66456253:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.87	1	56.87	56.37	57.37	0								0	0	0	0.37821	1	20217	20217		12.812	1.1758	1				36763	4638	25123	25212	37221	37221					0.07810333339944009
SKMDAIETAL	10	Unmodified	_SKMDAIETAL_					0	0	0			REV__EEA1|p.I175M|1|0.49|ENSG00000102189|chr12:92852292-92852292|T/C|missense_variant	REV__EEA1|p.I175M|1|0.49|ENSG00000102189|chr12:92852292-92852292|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7766723632812	2	539.776082	1077.53761	-1.4785	-0.00079806	1.9852	0.0010716	0.50671	0.00027351	539.7773598159398	31.955	0.17836	31.955	31.854	32.033	0					12	5	3	0	0	0	0.54861	1	11033	11033		40.058	1.0367	1	287730	+		36764	12769	25124	25213	37222	37222					0.001943557804906959
SKMIVTCLK	9	Unmodified	_SKMIVTCLK_					0	0	0			REV__ENST00000540600.5_1_11:113285027-113346393:-|nuORF	REV__ENST00000540600.5_1_11:113285027-113346393:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.78997802734375	2	511.790481	1021.56641	0.037067	1.897E-05	-1.5617	-0.00079926	-1.5246	-0.00078029	511.7897981297369	46.368	0.14793	46.368	46.29	46.438	0					10	6	2	0	0	0	0.1424	1	18558	18558		69.628	12.907	1	72442	+		36765	15414	25125	25214	37223	37223					0.0564880187594099
SKNALYKAL	9	Unmodified	_SKNALYKAL_					0	0	0			REV__tr|U7T5C0|U7T5C0_FUSNUKetoacylreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00515PE=3SV=1	REV__tr|U7T5C0|U7T5C0_FUSNUKetoacylreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00515PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.108	1	44.108	43.608	44.608	0								0	0	0	0.37821	1	15197	15197		12.812	0	1		+		36766	22176	25126	25215	37224	37224					0.0781033333993264
SKNATSPFSL	10	Unmodified	_SKNATSPFSL_					0	0	0			REV__ENSG00000183185|ENST00000472788|GABRR3	REV__ENSG00000183185|ENST00000472788|GABRR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2749633789062	2	526.274564	1050.53457	0.62692	0.00032993	0.22303	0.00011737	0.84995	0.0004473	526.2746773380431	40.571	0.10906	40.571	40.513	40.622	0					11	6	2	0	0	0	0.56931	1	13111	13111		37.812	3.639	1	58235	+		36767	16918	25127	25216	37225	37225					0.011328487179980584
SKNFSHEY	8	Unmodified	_SKNFSHEY_					0	0	0			REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6	REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.2324523925781	2	506.230156	1010.44576	3.7468	0.0018967	0.066017	3.342E-05	3.8128	0.0019301	506.2303166515613	27.716	0.33159	27.716	27.561	27.893	0					14	11	2	0	0	0	0.67394	1	8860	8860		37.159	0	1	83799	+		36768	20975	25128	25217	37226	37226					-0.059045665216672205
SKNLTKENEQ	10	Unmodified	_SKNLTKENEQ_					0	0	0		OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant;OLFML2B|p.L668Sfs*57|1|0.37|ENSG00000162745|chr1:161983927-161983927|C/-|frameshift_variant;ENSG00000162745|ENST00000294794|OLFML2B	OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant	OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.5400695800781	3	397.53857	1189.59388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.537	1	17.537	17.037	18.037	0								0	0	0	0.22047	1	5225	5225		61.691	3.445	1				36769	11871	25129	25218	37227	37227					0.006666999415074315
SKNPCKCLIG	10	2 Carbamidomethyl (C)	_SKNPC(Carbamidomethyl (C))KC(Carbamidomethyl (C))LIG_	SKNPC(1)KC(1)LIG		SKNPC(41)KC(41)LIG		0	2	0			REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.8681945800781	3	392.866976	1175.5791	3.4857	0.0013694	0.57665	0.00022655	4.0624	0.001596	392.867190888988	16.921	0.20643	16.921	16.836	17.043	0					15	8	2	0	0	0	0.536	1	4135	4135		41.427	6.2746	1	163010	+		36770	18401	25130	25219	37228	37228	651;652				-0.0016678673180194892
SKNTQVCVKL	10	Unmodified	_SKNTQVCVKL_					0	0	0		ENST00000476649.1_1_7:12662500-12665526:+|nuORF	ENST00000476649.1_1_7:12662500-12665526:+|nuORF	ENST00000476649.1_1_7:12662500-12665526:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.3130493164062	2	560.313166	1118.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.69	1	39.69	39.19	40.19	0								0	0	0	0.29806	1	13334	13334		51.193	0	1				36771	9910	25131	25220	37229	37229					0.057217436626842755
SKPGVPFEKP	10	Unmodified	_SKPGVPFEKP_					0	0	0			REV__ENST00000487863.5_1_19:53056575-53056806:+|nuORF	REV__ENST00000487863.5_1_19:53056575-53056806:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.5367431640625	3	362.537842	1084.5917	-2.0527	-0.00074417	-0.77473	-0.00028087	-2.8274	-0.001025	362.53745976851565	17.5	0.16714	17.5	17.401	17.568	0					11	5	3	0	0	0	0.67098	1	4380	4380		30.569	30.569	1	108040	+		36772	19683	25132	25221	37230	37230					0.05278315994382865
SKQLRAPSA	9	Unmodified	_SKQLRAPSA_					0	0	0			REV__MCM10|p.E240Kfs*26|1|0.13|ENSG00000065328|chr10:13175629-13175629|G/-|frameshift_variant	REV__MCM10|p.E240Kfs*26|1|0.13|ENSG00000065328|chr10:13175629-13175629|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2774658203125	2	479.277441	956.540328	0.076026	3.6437E-05	0.10101	4.8413E-05	0.17704	8.485E-05	479.2774606671298	48.767	0.58304	48.767	48.556	49.139	0					54	37	2	0	0	0	0.60749	1	15306	15306		20.947	0	1	75204	+		36773	13114	25133	25222	37231	37231					0.06031992020314192
SKQRYTGGVS	10	Unmodified	_SKQRYTGGVS_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7854614257812	2	541.783087	1081.55162	3.5537	0.0019253	0.77613	0.00042049	4.3298	0.0023458	541.7832486717099	38.865	1.3875	38.865	38.661	40.048	0					57	30	4	0	0	0	0.19797	1	15300	15300		79.713	1.4488	1	13128000	+		36774	17343	25134	25223	37232	37232					0.014107693237974672
SKQTRCLKGP	10	Unmodified	_SKQTRCLKGP_					0	0	0			REV__DCLRE1A|p.C207Nfs*7|1|0.07|ENSG00000198924|chr10:113850487-113850488|-/TTTACAGATTTTGTTG|frameshift_variant	REV__DCLRE1A|p.C207Nfs*7|1|0.07|ENSG00000198924|chr10:113850487-113850488|-/TTTACAGATTTTGTTG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2098693847656	3	373.209731	1116.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.586	1	36.586	36.086	37.086	0								0	0	0	0.39264	1	14258	14258		32.751	1.2207	1		+		36775	12678	25135	25224	37233	37233					0.05372279239782074
SKRLASSAM	9	Unmodified	_SKRLASSAM_					0	0	0			REV__ENSG00000185104|ENST00000396153|FAF1	REV__ENSG00000185104|ENST00000396153|FAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7597351074219	2	475.758027	949.5015	2.2982	0.0010934	0.77726	0.00036979	3.0754	0.0014632	475.7583792428597	35.265	3.5626	35.265	34.46	38.022	0					124	72	3	0	0	0	0.4966	1	13990	13990		32.812	3.6629	1	928520	+		36776	17008	25136	25225	37234	37234					0.024729433942979995
SKRMQESTK	9	Oxidation (M)	_SKRM(Oxidation (M))QESTK_		SKRM(1)QESTK		SKRM(48)QESTK	0	0	1			REV__ENST00000524669.5_1_11:57416530-57416830:-|nuORF	REV__ENST00000524669.5_1_11:57416530-57416830:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7828979492188	2	555.78223	1109.54991	1.8116	0.0010068	-0.47582	-0.00026445	1.3357	0.00074238	555.7819466478647	23.837	0.63582	23.837	23.736	24.372	0					17	14	2	0	0	0	0.33044	1	7958	7958		47.657	47.657	1	1507600	+		36777	19981	25137	25226	37235	37235		728			-0.000486077564801235
SKRMQESTK	9	Oxidation (M)	_SKRM(Oxidation (M))QESTK_		SKRM(1)QESTK		SKRM(99)QESTK	0	0	1			REV__ENST00000524669.5_1_11:57416530-57416830:-|nuORF	REV__ENST00000524669.5_1_11:57416530-57416830:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7828369140625	2	555.78223	1109.54991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.751	1	23.751	23.251	24.251	0								0	0	0	0.024201	1	8098	8098		98.629	10.875	1		+		36778	19981	25137	25226	37236	37236		728			-0.000486077564801235
SKSGVQSGR	9	Unmodified	_SKSGVQSGR_					0	0	0			REV__ENST00000284110.1_1_17:13505023-13505188:-|nuORF	REV__ENST00000284110.1_1_17:13505023-13505188:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.24530029296875	2	453.243598	904.472643	-0.41553	-0.00018834	3.381	0.0015324	2.9655	0.0013441	453.2453612462959	28.469	0.26345	28.469	28.311	28.574	0					8	5	2	0	0	0	0.3269	1	10330	10330		47.96	2.0076	1	167100	+		36779	18140	25138	25227	37237	37237					0.01658542089535331
SKSIEGGAPPM	11	Unmodified	_SKSIEGGAPPM_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2694702148438	2	537.268424	1072.5223	2.0994	0.0011279	-0.33538	-0.00018019	1.764	0.00094775	537.2681918145472	39.14	1.9396	39.14	38.312	40.251	0					175	73	3	0	0	0	0.67178	1	14786	14786		30.318	2.4355	1	496210	+		36780	15973	25139	25228	37238	37238					-0.011065110166782688
SKSLVMELR	9	Oxidation (M)	_SKSLVM(Oxidation (M))ELR_		SKSLVM(1)ELR		SKSLVM(60)ELR	0	0	1		ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;nc|ENSG00000197653|Q8IVF4|DNAH10;DNAH10|p.P1206Lfs*12|1|0.08|ENSG00000197653|chr12:123819219-123819219|C/-|frameshift_variant;DNAH10|p.E1360*|1|0.18|ENSG00000197653|chr12:123830579-123830580|-/T|frameshift_variant;DNAH10|p.K1737Nfs*15|2|0.42|ENSG00000197653|chr12:123845799-123845799|A/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant	ENSG00000197653|ENST00000673944|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7979125976562	2	539.799891	1077.58523	-1.4778	-0.00079772	-0.86607	-0.0004675	-2.3439	-0.0012652	539.7993817095096	42.415	0.25669	42.415	42.297	42.554	0					26	15	2	0	0	0	0.21263	1	14810	14810		60.118	60.118	1	520470			36781	7485	25140	25229	37239	37239		302			0.049540547713377237
SKSRPPYI	8	Unmodified	_SKSRPPYI_					0	0	0			REV__ENST00000429967.2_1_X:128780792-128781152:-|nuORF	REV__ENST00000429967.2_1_X:128780792-128781152:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2666931152344	2	474.269084	946.523616	-0.48419	-0.00022964	-1.889	-0.00089589	-2.3732	-0.0011255	474.26794114265124	39.861	0.31508	39.861	39.697	40.012	0					27	12	3	0	0	0	0.59411	1	15181	15181		50.025	0	1	213000	+		36782	19153	25141	25230	37240	37240					0.04821491134362077
SKSVVAQIP	9	Unmodified	_SKSVVAQIP_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.77642822265625	2	464.776742	927.538931	-0.13945	-6.4813E-05	-0.3919	-0.00018214	-0.53135	-0.00024696	464.77657246802556	25.939	0.34698	25.939	25.704	26.051	0					11	5	3	0	0	0	0.21263	1	9216	9216		60.118	14.146	1	245930			36783	8103	25142	25231	37241	37241					0.07226357931563143
SKTFCRAQI	9	Unmodified	_SKTFCRAQI_					0	0	0		EHF|p.K201Sfs*18|1|0.2|ENSG00000135373|chr11:34656961-34656961|A/-|frameshift_variant;ENSG00000135373|ENST00000257831|EHF;nc|ENSG00000135373|Q9NZC4-3|EHF	EHF|p.K201Sfs*18|1|0.2|ENSG00000135373|chr11:34656961-34656961|A/-|frameshift_variant	EHF|p.K201Sfs*18|1|0.2|ENSG00000135373|chr11:34656961-34656961|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2794189453125	2	527.279126	1052.5437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.403	1	15.403	14.903	15.903	0								0	0	0	0.36359	1	3970	3970		14.865	3.9993	1				36784	894	25143	25232	37242	37242					0.019529188026808697
SKTHILEW	8	Unmodified	_SKTHILEW_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-3|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-3|TIAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.77288818359375	2	507.274367	1012.53418	-0.64914	-0.00032929	-1.9282	-0.00097813	-2.5774	-0.0013074	507.27352043859804	28.398	0.31783	28.398	28.234	28.552	0					19	11	2	0	0	0	0.7126	1	9128	9128		31.955	0	1	254540	+		36785	15313	25144	25233	37243	37243					0.028414737888056152
SKTLEGELR	9	Unmodified	_SKTLEGELR_					0	0	0			REV__ENST00000552221.1_1_12:108941677-108954930:-|nuORF	REV__ENST00000552221.1_1_12:108941677-108954930:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.787841796875	2	516.787838	1031.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.692	1	13.692	13.192	14.192	0								0	0	0	0.29356	1	3239	3239		36.447	0	1		+		36786	20209	25145	25234	37244	37244					0.04660537609311177
SKTRFRWI	8	Unmodified	_SKTRFRWI_					0	0	0		RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant;RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.3175659179688	2	547.3169	1092.61925	1.2246	0.00067022	-0.91501	-0.0005008	0.30955	0.00016942	547.3165064349108	27.133	0.12326	27.133	27.087	27.211	0					8	4	2	0	0	0	0.7976	1	8331	8331		18.324	2.6826	1	43106			36787	7296	25146	25235	37245	37245					0.07664264045274649
SKTTLPVL	8	Unmodified	_SKTTLPVL_					0	0	0		ENST00000515558.1_1_5:126394507-126407313:-|nuORF;ENSG00000164241|ENST00000296662|C5orf63;nc|nan|A6NC05|C5orf63	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.76824951171875	2	429.768386	857.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.023	1	38.023	37.523	38.523	0								0	0	0	1.7419	1	14439	14439		68.787	7.8149	1				36788	5671	25147	25236	37246	37246					0.08775857045600333
SKTTRKGKEKS	11	Unmodified	_SKTTRKGKEKS_					0	0	0		ENSG00000118492|ENST00000397944|ADGB;ADGB|p.K1379Rfs*12|1|0.29|ENSG00000118492|chr6:146784714-146784714|A/-|frameshift_variant;nc|ENSG00000118492|Q8N7X0-2|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.24310302734375	3	417.245609	1248.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.532	1	21.532	21.032	22.032	0								0	0	0	0.16638	1	6197	6197		66.92	19.693	1				36789	72	25148	25237	37247	37247					0.1005894737484141
SKVDLVIKQ	9	Unmodified	_SKVDLVIKQ_					0	0	0			REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.8815612792969	3	343.881608	1028.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.46	1	23.46	22.96	23.96	0								0	0	0	0.088368	1	7163	7163		81.525	0	1		+		36790	21900	25149	25238	37248	37248					0.10982889028446152
SKVTKTDVL	9	Unmodified	_SKVTKTDVL_					0	0	0		ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.86572265625	3	330.865847	989.575711	-0.002194	-7.2593E-07	-0.026305	-8.7035E-06	-0.028499	-9.4294E-06	330.8657324112701	23.97	0.21572	23.97	23.829	24.045	0					8	4	3	0	0	0	0.61124	1	8225	8225		18.262	5.4504	1	391190			36791	10906	25150	25239	37249	37249					0.0805060975745846
SKWCTLKE	8	Carbamidomethyl (C)	_SKWC(Carbamidomethyl (C))TLKE_	SKWC(1)TLKE		SKWC(64)TLKE		0	1	0		ENST00000404220.7_1_21:34635801-34636137:+|nuORF	ENST00000404220.7_1_21:34635801-34636137:+|nuORF	ENST00000404220.7_1_21:34635801-34636137:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2667236328125	2	526.265684	1050.51682	1.6277	0.00085658	0.45819	0.00024113	2.0858	0.0010977	526.2659099042708	17.875	0.35777	17.875	17.767	18.125	0					21	7	4	0	0	0	0.4668	1	5248	5248		63.534	63.534	1	10165000			36792	9268	25151	25240	37250	37250	384				-0.00642189808513649
SKYQLQKKTQ	10	Unmodified	_SKYQLQKKTQ_					0	0	0		DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant	DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant	DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	626.3565063476562	2	626.356419	1250.69829	1.0539	0.00066009	-0.68351	-0.00042812	0.37035	0.00023197	626.3560405372939	22.721	0.1726	22.721	22.633	22.805	0					12	4	4	0	0	0	0.26198	1	7414	7414		71.877	3.2517	1	1248100			36793	835	25152	25241	37251	37251					0.08296446488884612
SKYSGNQI	8	Unmodified	_SKYSGNQI_					0	0	0			REV__nc|ENSG00000163939|Q86U86-5|PBRM1	REV__nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.7265930175781	2	448.727249	895.439946	-0.30212	-0.00013557	-0.86978	-0.0003903	-1.1719	-0.00052586	448.726600102865	27.576	0.12185	27.576	27.492	27.614	0					7	4	2	0	0	0	0.77246	1	8523	8523		24.203	0	1	50482	+		36794	15940	25153	25242	37252	37252					-0.011956650333331709
SKYVHLLQ	8	Unmodified	_SKYVHLLQ_					0	0	0			REV__ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant	REV__ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.8599853515625	3	329.858915	986.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.014	1	19.014	18.514	19.514	0								0	0	0	1.7419	1	5662	5662		54.776	18.33	1		+		36795	12039	25154	25243	37253	37253					0.06110064168478857
SLAAAQKLL	9	Unmodified	_SLAAAQKLL_					0	0	0			REV__nc|ENSG00000009780|Q8TAV0-5|FAM76A	REV__nc|ENSG00000009780|Q8TAV0-5|FAM76A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7869567871094	2	457.78711	913.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.896	1	30.896	30.396	31.396	0								0	0	0	0.28996	1	11596	11596		37.159	0	1		+		36796	12885	25155	25244	37254	37254					0.09942948311231703
SLAAAVYL	8	Unmodified	_SLAAAVYL_					0	0	0			REV__ENST00000290759.8_1_15:76634172-76634577:+|nuORF	REV__ENST00000290759.8_1_15:76634172-76634577:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.2327575683594	2	404.234179	806.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.173	1	51.173	50.673	51.673	0								0	0	0	1.7419	1	18323	18323		23.037	6.3317	1		+		36797	18157	25156	25245	37255	37255					0.04283612465758324
SLAADKPQL	9	Unmodified	_SLAADKPQL_					0	0	0			REV__MTUS1|p.A567Qfs*4|1|0.2|ENSG00000129422|chr8:17754110-17754110|T/-|frameshift_variant	REV__MTUS1|p.A567Qfs*4|1|0.2|ENSG00000129422|chr8:17754110-17754110|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7658996582031	2	471.766374	941.518196	-1.4103	-0.00066532	0.32221	0.00015201	-1.0881	-0.00051332	471.7666790145702	24.021	0.42592	24.021	23.797	24.223	0					42	14	4	0	0	0	0.15163	1	7238	7238		67.494	12.717	1	1449000	+		36798	14547	25157	25246	37256	37256					0.04509767551905952
SLAAGGGAAL	10	Unmodified	_SLAAGGGAAL_					0	0	0		ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4	ENSG00000113430|ENST00000231357|IRX4	ENSG00000113430|ENST00000231357|IRX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.2192687988281	2	394.21906	786.423567	0.49156	0.00019378	-0.16808	-6.6259E-05	0.32349	0.00012752	394.2190552994901	12.23	0.13488	12.23	12.18	12.315	0					5	3	2	0	0	0	0.7506	1	2732	2732		12.959	2.0936	1	129790			36799	2804	25158	25247	37257	37257					0.02181253800563354
SLAALSKVI	9	Unmodified	_SLAALSKVI_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2894592285156	2	451.289485	900.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.421	1	36.421	35.921	36.921	0								0	0	0	0.15451	1	14183	14183		58.782	5.4305	1				36800	7189	25159	25248	37258	37258					0.11015832453995245
SLAAVGISKK	10	Unmodified	_SLAAVGISKK_					0	0	0		ENST00000473262.5_1_3:124837626-124909342:-|nuORF	ENST00000473262.5_1_3:124837626-124909342:-|nuORF	ENST00000473262.5_1_3:124837626-124909342:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.2061767578125	3	325.206203	972.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.606	1	13.606	13.106	14.106	0								0	0	0	0.38322	1	3133	3133		32.751	0	1				36801	9873	25160	25249	37259	37259					0.10938619856995047
SLAAVPAPGAV	11	Unmodified	_SLAAVPAPGAV_					0	0	0			REV__ENST00000441394.1_1_13:30880936-30881176:-|nuORF	REV__ENST00000441394.1_1_13:30880936-30881176:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7760314941406	2	476.776742	951.538931	0.63577	0.00030312	-0.92469	-0.00044087	-0.28892	-0.00013775	476.77625473375787	38.534	0.51797	38.534	38.248	38.766	0					43	18	3	0	0	0	0.35272	1	15079	15079		56.721	9.0637	1	467400	+		36802	19240	25161	25250	37260	37260					0.06122357931565148
SLADFQIEK	9	Unmodified	_SLADFQIEK_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7788696289062	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.423	1	38.423	37.923	38.923	0								0	0	0	0.068244	1	12959	12959		74.165	0	1				36803	3113	25162	25251	37261	37261					0.016537328607682866
SLADFQIEK	9	Unmodified	_SLADFQIEK_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7772827148438	2	525.776939	1049.53933	3.4522	0.0018151	0.65058	0.00034206	4.1028	0.0021572	525.7781737941426	38.569	0.78053	38.569	38.235	39.015	0					27	16	3	0	0	0	0.19556	1	15186	15186		63.426	1.6619	1	879050			36804	3113	25162	25251	37262	37262					0.016537328607682866
SLADHLPTV	9	Unmodified	_SLADHLPTV_					0	0	0			REV__ENST00000493934.1_1_5:94027891-94043961:+|nuORF	REV__ENST00000493934.1_1_5:94027891-94043961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7580261230469	2	476.758549	951.502546	0.63553	0.000303	-0.7696	-0.00036691	-0.13407	-6.3919E-05	476.7582643876798	38.76	0.22164	38.76	38.65	38.871	0					15	8	3	0	0	0	0.37197	1	15208	15208		44.117	0	1	170870	+		36805	14704	25163	25252	37263	37263					0.0248548103485291
SLAEFVVQK	9	Unmodified	_SLAEFVVQK_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant;DNAJC13|p.I470Tfs*3|1|0.04|ENSG00000138246|chr3:132457327-132457328|-/CATTT|frameshift_variant	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7901916503906	2	510.78985	1019.56515	0.98123	0.0005012	-0.39757	-0.00020307	0.58366	0.00029813	510.78982615819893	37.439	0.1458	37.439	37.358	37.504	0					7	4	2	0	0	0	0.22823	1	14197	14197		60.118	12.461	1	98027			36806	4241	25164	25253	37264	37264					0.05614627103057046
SLAEILLKK	9	Unmodified	_SLAEILLKK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.83203125	2	507.831517	1013.64848	-0.029651	-1.5058E-05	-0.11062	-5.6176E-05	-0.14027	-7.1233E-05	507.8314513753663	38.278	0.25444	38.278	38.174	38.429	0					14	9	2	0	0	0	0.032052	1	14526	14526		107.01	35.13	1	215060			36807	7746	25165	25254	37265	37265					0.14220363550907678
SLAEILLKK	9	Unmodified	_SLAEILLKK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.832275390625	2	507.831517	1013.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.253	1	38.253	37.753	38.753	0								0	0	0	0.15451	1	15000	15000		58.782	14.665	1				36808	7746	25165	25254	37266	37266					0.14220363550907678
SLAELRRH	8	Unmodified	_SLAELRRH_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2;SOGA1|p.D1221Gfs*26|1|0.3|ENSG00000149639|chr20:36794420-36794421|-/C|frameshift_variant;SOGA1|p.Q570Rfs*87|1|0.29|ENSG00000149639|chr20:36815734-36815734|G/-|frameshift_variant	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.8580322265625	3	327.857797	980.551562	0.28816	9.4477E-05	-0.65817	-0.00021579	-0.37001	-0.00012131	327.85761746051287	14.671	0.27198	14.671	14.551	14.823	0					27	11	3	0	0	0	0.72892	1	3030	3030		40.573	8.6178	1	329990			36809	4901	25166	25255	37267	37267					0.06050814114462355
SLAETVHCD	9	Unmodified	_SLAETVHCD_					0	0	0		ENG|p.Y258Lfs*76|1|0.4|ENSG00000106991|chr9:127825275-127825276|-/G|frameshift_variant;ENG|p.N286Tfs*73|1|0.3|ENSG00000106991|chr9:127824934-127824934|T/-|frameshift_variant;ENG|p.G400Vfs*21|1|0.34|ENSG00000106991|chr9:127819973-127819973|C/-|frameshift_variant;nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG;ENG|p.R93Efs*9|1|0.16|ENSG00000106991|chr9:127829770-127829770|G/-|frameshift_variant	ENG|p.Y258Lfs*76|1|0.4|ENSG00000106991|chr9:127825275-127825276|-/G|frameshift_variant	ENG|p.Y258Lfs*76|1|0.4|ENSG00000106991|chr9:127825275-127825276|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7169494628906	2	487.716024	973.417496	0.46119	0.00022493	-0.84338	-0.00041133	-0.38219	-0.0001864	487.7156483311817	28.801	0.30187	28.801	28.651	28.953	0					11	7	2	0	0	0	0.5879	1	9606	9606		23.042	1.0826	1	57481			36810	917	25167	25256	37268	37268					-0.07027632493259262
SLAFLLMFI	9	Unmodified	_SLAFLLMFI_					0	0	0		TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant;ENSG00000183160|ENST00000392806|TMEM119	TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant	TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.2061462402344	3	352.205035	1053.59328	3.0389	0.0010703	0.4718	0.00016617	3.5107	0.0012365	352.205052429833	33.042	0.59159	33.042	32.941	33.533	0					18	12	2	0	0	0	0.49003	1	12528	12528		40.778	0	1	643030			36811	6943	25168	25257	37269	37269					0.06862233758783987
SLAFPGVPL	9	Unmodified	_SLAFPGVPL_					0	0	0		ENST00000480946.6_1_8:144659238-144660323:-|nuORF;NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant;nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT	ENST00000480946.6_1_8:144659238-144660323:-|nuORF	ENST00000480946.6_1_8:144659238-144660323:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.7647705078125	2	450.763104	899.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.99	1	29.99	29.49	30.49	0								0	0	0	0.13662	1	10157	10157		62.978	0	1				36812	4799	25169	25258	37270	37270					0.057878743911942365
SLAGGSLGGV	10	Unmodified	_SLAGGSLGGV_					0	0	0			REV__ENSG00000068323|ENST00000315869|TFE3	REV__ENSG00000068323|ENST00000315869|TFE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.22454833984375	2	409.224342	816.434132	-0.09155	-3.7464E-05	0.29319	0.00011998	0.20164	8.2517E-05	409.22442751803544	16.773	0.10616	16.773	16.711	16.817	0					5	3	2	0	0	0	0.28723	1	4056	4056		68.787	2.3575	1	79594	+		36813	13145	25170	25259	37271	37271					0.0185723645500957
SLAGLGIDL	9	Unmodified	_SLAGLGIDL_					0	0	0		ENST00000473996.1_1_3:48454981-48455344:-|nuORF	ENST00000473996.1_1_3:48454981-48455344:-|nuORF	ENST00000473996.1_1_3:48454981-48455344:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.7500915527344	2	429.750193	857.485833	-0.51191	-0.00021999	0.30791	0.00013232	-0.204	-8.767E-05	429.7504784285301	34.662	0.20641	34.662	34.54	34.746	0					6	5	2	0	0	0	0.2873	1	13390	13390		51.335	3.6781	1	44225			36814	9886	25171	25260	37272	37272					0.05138980148910832
SLAGLGIDL	9	Unmodified	_SLAGLGIDL_					0	0	0		ENST00000473996.1_1_3:48454981-48455344:-|nuORF	ENST00000473996.1_1_3:48454981-48455344:-|nuORF	ENST00000473996.1_1_3:48454981-48455344:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7499694824219	2	429.750193	857.485833	-0.44038	-0.00018925	-0.26758	-0.00011499	-0.70796	-0.00030424	429.75014647903055	34.608	0.2606	34.608	34.489	34.75	0					7	5	2	0	0	0	0.036372	1	13286	13286		102.77	9.5779	1	84542			36815	9886	25171	25260	37273	37273					0.05138980148910832
SLAGNAYALT	10	Unmodified	_SLAGNAYALT_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7558898925781	2	490.756007	979.497461	-0.066849	-3.2806E-05	-0.84839	-0.00041635	-0.91524	-0.00044916	490.7556921518539	22.079	0.21492	22.079	21.972	22.187	0					6	4	2	0	0	0	0.536	1	7433	7433		41.427	0.64845	1	127850			36816	5740	25172	25261	37274	37274					0.006891771722166595
SLAGPLQK	8	Unmodified	_SLAGPLQK_					0	0	0		nc|ENSG00000003137|Q9NR63-3|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.2447509765625	2	407.245078	812.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.166	1	38.166	37.666	38.666	0								0	0	0	1.7419	1	14964	14964		26.796	0	1				36817	11409	25173	25262	37275	37275					0.061864172143259566
SLAGRVKHI	9	Unmodified	_SLAGRVKHI_					0	0	0		nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.8016357421875	2	490.803626	979.592698	-2.7557	-0.0013525	-1.1264	-0.00055282	-3.882	-0.0019053	490.80310476376116	22.462	0.28799	22.462	22.362	22.65	0					10	6	2	0	0	0	0.53083	1	6710	6710		29.15	29.15	1	94295			36818	5855	25174	25263	37276	37276					0.10208575153933452
SLAHIQATGAQ	11	Unmodified	_SLAHIQATGAQ_					0	0	0		sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1;sp|F5HG98|UL38_HCMVMApoptosisinhibitorUL38OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL38PE=1SV=1	sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7932739257812	2	548.790912	1095.56727	1.8496	0.0010151	1.9068	0.0010464	3.7564	0.0020615	548.7918274898014	27.854	0.46526	27.854	27.746	28.211	0					15	9	3	0	0	0	0.38515	1	10034	10034		53.089	0.15226	1	1140300			36819	22454	25175	25264	37277	37277					0.023310558408638826
SLAHVVPAY	9	Unmodified	_SLAHVVPAY_					0	0	0		ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENST00000466012.5_1_2:219142848-219157252:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7633056640625	2	478.763635	955.512717	-0.11609	-5.5581E-05	-0.71002	-0.00033993	-0.82611	-0.00039551	478.76338114477306	34.05	0.51791	34.05	33.723	34.241	0					21	12	2	0	0	0	0.39123	1	13021	13021		42.474	7.2737	1	89980			36820	9784	25176	25265	37278	37278					0.03318088760090632
SLAIIMQEV	9	Unmodified	_SLAIIMQEV_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2781982421875	2	502.27826	1002.54197	0.97267	0.00048855	-1.1156	-0.00056034	-0.14293	-7.1791E-05	502.2777266506396	40.619	0.26915	40.619	40.54	40.809	0					17	11	2	0	0	0	0.36892	1	16001	16001		44.377	0	1	246040			36821	3795	25177	25266	37279	37279					0.040798649940711584
SLAISLSLK	9	Unmodified	_SLAISLSLK_					0	0	0		ENST00000403534.7_1_19:45251011-45251212:+|nuORF	ENST00000403534.7_1_19:45251011-45251212:+|nuORF	ENST00000403534.7_1_19:45251011-45251212:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.29510498046875	2	466.294768	930.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.585	1	44.585	44.085	45.085	0								0	0	0	0.29356	1	17863	17863		36.447	3.6962	1				36822	9264	25178	25267	37280	37280					0.10691815108418723
SLAKEIQYL	9	Unmodified	_SLAKEIQYL_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.5377197265625	3	355.53773	1063.59136	0.71442	0.000254	-0.83547	-0.00029704	-0.12105	-4.3037E-05	355.53744229441145	26.539	0.31915	26.539	26.409	26.729	0					16	7	3	0	0	0	0.53083	1	9181	9181		44.377	0	1	1011600			36823	3535	25179	25268	37281	37281					0.062108962745242025
SLAKSKSKKE	10	Unmodified	_SLAKSKSKKE_					0	0	0		ENST00000535789.1_1_11:63437843-63437963:-|nuORF	ENST00000535789.1_1_11:63437843-63437963:-|nuORF	ENST00000535789.1_1_11:63437843-63437963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.3348999023438	2	553.332413	1104.65027	3.636	0.0020119	0.59899	0.00033144	4.235	0.0023434	553.3326643383342	29.672	0.41417	29.672	29.566	29.98	0					13	8	3	0	0	0	0.34667	1	10911	10911		62.107	12.666	1	935670			36824	10483	25180	25269	37282	37282					0.10213372568841805
SLAMKILW	8	Unmodified	_SLAMKILW_					0	0	0		ENST00000307116.6_1_10:74790078-74804739:-|nuORF	ENST00000307116.6_1_10:74790078-74804739:-|nuORF	ENST00000307116.6_1_10:74790078-74804739:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2812805175781	2	481.280606	960.546659	0.91434	0.00044005	0.48415	0.00023301	1.3985	0.00067307	481.2807010319196	33.291	0.36516	33.291	33.135	33.5	0					13	7	3	0	0	0	0.61938	1	12653	12653		45.952	45.952	1	691570			36825	8526	25181	25270	37283	37283					0.06480793927505601
SLANTFAGVI	10	Unmodified	_SLANTFAGVI_					0	0	0			REV__nc|ENSG00000285253|Q6N043-3|ZNF280D	REV__nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7739562988281	2	496.7742	991.533846	0.97722	0.00048546	-1.1414	-0.000567	-0.16414	-8.1541E-05	496.7736736664521	40.977	0.32538	40.977	40.748	41.074	0					9	5	2	0	0	0	0.44601	1	16278	16278		51.193	0	1	160570	+		36826	21254	25182	25271	37284	37284					0.037740540689469526
SLAPIAVTK	9	Unmodified	_SLAPIAVTK_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2812194824219	2	450.28166	898.548768	-0.19222	-8.6555E-05	-0.56418	-0.00025404	-0.7564	-0.00034059	450.28136617967016	32.277	0.29011	32.277	32.168	32.458	0					16	8	3	0	0	0	0.1424	1	11200	11200		69.628	4.1622	1	421970	+		36827	14981	25183	25272	37285	37285					0.09543545936946884
SLAQCKKEI	9	Unmodified	_SLAQCKKEI_					0	0	0			REV__nc|ENSG00000163554|P02549-2|SPTA1	REV__nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.28173828125	2	510.281334	1018.54812	-0.44651	-0.00022785	0.218	0.00011124	-0.22851	-0.0001166	510.2813922346042	27.33	0.1777	27.33	27.272	27.449	0					12	6	3	0	0	0	0.33044	1	8730	8730		47.657	1.6851	1	142300	+		36828	15893	25184	25273	37286	37286					0.039583832255971174
SLARQLHFN	9	Unmodified	_SLARQLHFN_					0	0	0			REV__ENST00000392562.5_1_17:73389792-73400993:-|nuORF	REV__ENST00000392562.5_1_17:73389792-73400993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2987060546875	2	543.296165	1084.57778	1.143	0.00062101	2.2605	0.0012281	3.4035	0.0018491	543.2973300419874	29.079	0.20315	29.079	28.976	29.179	0					7	4	2	0	0	0	0.45358	1	10740	10740		37.159	2.9866	1	82002	+		36829	18831	25185	25274	37287	37287					0.03887083285940207
SLARQRKW	8	Unmodified	_SLARQRKW_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.8729553222656	3	348.873559	1043.59885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.784	1	24.784	24.284	25.284	0								0	0	0	1.7419	1	8715	8715		30.504	1.3336	1				36830	2986	25186	25275	37288	37288					0.07879093385486158
SLASFALAPP	10	Unmodified	_SLASFALAPP_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2693786621094	2	487.271293	972.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.121	1	30.121	29.621	30.621	0								0	0	0	0.40446	1	9565	9565		29.15	2.3535	1		+		36831	12522	25187	25276	37289	37289					0.040669555572890204
SLASLRLFGG	10	Unmodified	_SLASLRLFGG_					0	0	0		ENST00000326793.10_2_3:194999558-194999657:-|nuORF	ENST00000326793.10_2_3:194999558-194999657:-|nuORF	ENST00000326793.10_2_3:194999558-194999657:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7953796386719	2	510.795466	1019.57638	-0.0071569	-3.6557E-06	-1.35	-0.00068957	-1.3571	-0.00069322	510.7946866459217	31.975	0.21136	31.975	31.887	32.099	0					9	5	2	0	0	0	0.47859	1	11722	11722		47.657	5.2612	1	114210			36832	8651	25188	25277	37290	37290					0.06737449197203205
SLASQGLVLA	10	Unmodified	_SLASQGLVLA_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7818603515625	2	479.782025	957.549496	-0.48587	-0.00023311	0.19989	9.5905E-05	-0.28598	-0.00013721	479.78206535931105	32.376	0.22869	32.376	32.259	32.488	0					11	5	3	0	0	0	0.49411	1	12297	12297		45.972	0	1	233040			36833	11711	25189	25278	37291	37291					0.0690234058599799
SLASTSTKV	9	Unmodified	_SLASTSTKV_					0	0	0		nc|ENSG00000070985|Q9NZQ8-3|TRPM5;ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.2502746582031	2	447.250557	892.486562	-0.12793	-5.7215E-05	-0.47031	-0.00021035	-0.59824	-0.00026756	447.25028755149503	24.916	0.11671	24.916	24.857	24.974	0					4	2	2	0	0	0	0.14603	1	8792	8792		68.787	0.30212	1	125670			36834	1464	25190	25279	37292	37292					0.03601774797948565
SLATIQKIP	9	Unmodified	_SLATIQKIP_					0	0	0		nc|ENSG00000157954|Q9Y4P8-3|WIPI2;ENST00000466014.5_1_7:5232953-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-2|WIPI2;nc|ENSG00000157954|Q9Y4P8-4|WIPI2;nc|ENSG00000157954|Q9Y4P8-5|WIPI2;nc|ENSG00000157954|Q9Y4P8-6|WIPI2;ENSG00000157954|ENST00000288828|WIPI2;ENST00000471851.1_1_7:5266712-5270575:+|nuORF	nc|ENSG00000157954|Q9Y4P8-3|WIPI2	nc|ENSG00000157954|Q9Y4P8-3|WIPI2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.06	1	37.06	36.56	37.56	0								0	0	0	0.3428	1	14022	14022		26.693	1.1189	1				36835	5238	25191	25280	37293	37293					0.09987217482705546
SLATQLGGPA	10	Unmodified	_SLATQLGGPA_					0	0	0			REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7503356933594	2	457.750724	913.486896	-0.15327	-7.0159E-05	-0.62014	-0.00028387	-0.77341	-0.00035403	457.750445179701	23.435	0.36617	23.435	23.263	23.629	0					15	7	3	0	0	0	0.44469	1	8079	8079		51.335	3.3759	1	339250	+		36836	20297	25192	25281	37294	37294					0.02669194517818596
SLAVNLRM	8	Unmodified	_SLAVNLRM_					0	0	0			REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2523193359375	2	452.257662	902.500772	2.5231	0.0011411	2.5642	0.0011597	5.0873	0.0023008	452.25868227861315	30.317	0.39808	30.317	30.214	30.612	0					13	8	3	0	0	0	0.25001	1	11173	11173		101.21	13.457	1	2005000	+		36837	20307	25193	25282	37295	37295					0.04562148745264949
SLCILLFFVF	10	Unmodified	_SLCILLFFVF_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|135|3|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|135|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.227294921875	3	401.22784	1200.66169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.882	1	15.882	15.382	16.382	0								0	0	0	0.39665	1	3706	3706		31.53	9.7494	1		+		36838	20833	25194	25283	37296	37296					0.06938478338611276
SLCPTPRQ	8	Unmodified	_SLCPTPRQ_					0	0	0			REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF	REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.23126220703125	2	451.231645	900.448736	-0.10718	-4.8362E-05	-0.75595	-0.00034111	-0.86313	-0.00038947	451.2312878222703	19.535	0.9646	19.535	19.231	20.195	0					36	19	2	0	0	0	0.70598	1	6156	6156		32.812	3.6629	1	329800	+		36839	19139	25195	25284	37297	37297					-0.005470146685070176
SLCSVSIEK	9	Carbamidomethyl (C)	_SLC(Carbamidomethyl (C))SVSIEK_	SLC(1)SVSIEK		SLC(43)SVSIEK		0	1	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;ENST00000504946.5_1_3:123400948-123419770:-|nuORF;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7629089355469	2	511.762975	1021.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.384	1	28.384	27.884	28.884	0								0	0	0	0.25587	1	9414	9414		42.864	8.6917	1				36840	1374	25196	25285	37298	37298	52				0.0015008660902822157
SLCSVSIEK	9	Carbamidomethyl (C)	_SLC(Carbamidomethyl (C))SVSIEK_	SLC(1)SVSIEK		SLC(60)SVSIEK		0	1	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;ENST00000504946.5_1_3:123400948-123419770:-|nuORF;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7629089355469	2	511.762975	1021.5114	0.038874	1.9894E-05	-0.35871	-0.00018357	-0.31984	-0.00016368	511.76295028308346	28.518	0.31565	28.518	28.359	28.675	0					13	6	3	0	0	0	0.21263	1	10352	10352		60.118	12.159	1	563260			36841	1374	25196	25285	37299	37299	52				0.0015008660902822157
SLCSVVPPLD	10	Unmodified	_SLCSVVPPLD_					0	0	0			REV__ENST00000526905.1_1_1:154574987-154581231:-|nuORF	REV__ENST00000526905.1_1_1:154574987-154581231:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2678833007812	2	515.267893	1028.52123	1.2976	0.00066861	-0.63399	-0.00032667	0.66361	0.00034194	515.2675699423228	30.873	0.49028	30.873	30.746	31.236	0					33	19	2	0	0	0	0.66185	1	9847	9847		26.693	1.1189	1	109530	+		36842	18606	25197	25286	37300	37300					0.008112746143979166
SLCVVLFVA	9	Carbamidomethyl (C)	_SLC(Carbamidomethyl (C))VVLFVA_	SLC(1)VVLFVA		SLC(42)VVLFVA		0	1	0			REV__DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	REV__DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.52587890625	3	336.524656	1006.55214	0.53461	0.00017991	3.294	0.0011085	3.8286	0.0012884	336.5257534733288	14.918	0.26558	14.918	14.813	15.079	0					6	5	2	0	0	0	0.39215	1	3988	3988		42.396	6.7778	1	520060	+		36843	12685	25198	25287	37301	37301	499				0.049124727192975115
SLDARSAFV	9	Unmodified	_SLDARSAFV_					0	0	0		sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.25628662109375	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.394	1	29.394	28.894	29.894	0								0	0	0	0.27939	1	9882	9882		39.253	2.0937	1				36844	22444	25199	25288	37302	37302					0.01412596892100737
SLDEATVALF	10	Unmodified	_SLDEATVALF_					0	0	0			REV__ENSG00000088280|ENST00000336689|ASAP3	REV__ENSG00000088280|ENST00000336689|ASAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2734375	2	533.276772	1064.53899	-1.3011	-0.00069387	-0.56499	-0.00030129	-1.8661	-0.00099516	533.7791931999293	31.64	0.20368	31.64	31.503	31.707	0					8	5	2	0	0	0	0.47859	1	10902	10902		47.657	1.6851	1	244480	+		36845	13390	25200	25289	37303	37303					0.009303131409069465
SLDFEIRS	8	Unmodified	_SLDFEIRS_					0	0	0		ZNF436|p.Q213Pfs*14|1|0.33|ENSG00000125945|chr1:23362744-23362745|-/GATG|frameshift_variant;ENSG00000125945|ENST00000314011|ZNF436	ZNF436|p.Q213Pfs*14|1|0.33|ENSG00000125945|chr1:23362744-23362745|-/GATG|frameshift_variant	ZNF436|p.Q213Pfs*14|1|0.33|ENSG00000125945|chr1:23362744-23362745|-/GATG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7491455078125	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.98	1	16.98	16.48	17.48	0								0	0	0	1.7419	1	3964	3964		40.573	0	1				36846	3450	25201	25290	37304	37304					-0.0023110934480428114
SLDGVAVAVL	10	Unmodified	_SLDGVAVAVL_					0	0	0		ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2764587402344	2	472.276575	942.538597	-0.16708	-7.8909E-05	0.13642	6.4426E-05	-0.030667	-1.4483E-05	472.27652144736857	36.358	0.19341	36.358	36.282	36.475	0					12	8	2	0	0	0	0.24485	1	13006	13006		73.975	8.1716	1	105540			36847	202	25202	25291	37305	37305					0.06502938211713172
SLDIGIAKGL	10	Unmodified	_SLDIGIAKGL_					0	0	0			REV__ENST00000466748.5_1_X:123095638-123189980:+|nuORF	REV__ENST00000466748.5_1_X:123095638-123189980:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.79827880859375	2	493.797675	985.580796	-1.2695	-0.00062688	1.9577	0.00096673	0.68823	0.00033985	493.79853051185796	38.851	0.13232	38.851	38.779	38.911	0					11	7	2	0	0	0	0.52275	1	13081	13081		42.864	2.0861	1	32511	+		36848	18647	25203	25292	37306	37306					0.08742913620085346
SLDIKTLPL	9	Unmodified	_SLDIKTLPL_					0	0	0			REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4	REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.3079528808594	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.621	1	39.621	39.121	40.121	0								0	0	0	0.25587	1	15590	15590		42.864	2.0861	1		+		36849	13447	25204	25293	37307	37307					0.10184084279910621
SLDILQKI	8	Unmodified	_SLDILQKI_					0	0	0			REV__tr|U7T2P8|U7T2P8_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00413PE=4SV=1	REV__tr|U7T2P8|U7T2P8_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00413PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.286376953125	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.422	1	39.422	38.922	39.922	0								0	0	0	1.7419	1	15012	15012		63.306	0	1		+		36850	22113	25205	25294	37308	37308					0.09219528591370363
SLDKELMAQK	10	Unmodified	_SLDKELMAQK_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC;ENST00000426910.1_1_X:134568027-134569581:+|nuORF;ENST00000477773.1_1_1:17274966-17277650:+|nuORF	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	581.8093872070312	2	581.810456	1161.60636	0.56753	0.00033019	-3.2393	-0.0018847	-2.6718	-0.0015545	581.8087896066205	23.301	0.23916	23.301	23.162	23.401	0					9	5	2	0	0	0	0.43008	1	7104	7104		52.937	21.407	1	59490			36851	1303	25206	25295	37309	37309					0.032020200801980536
SLDKVEKNFY	10	Unmodified	_SLDKVEKNFY_					0	0	0			REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	621.8204956054688	2	621.821878	1241.6292	-0.68378	-0.00042519	-1.1932	-0.00074199	-1.877	-0.0011672	621.8212484484058	13.31	0.23746	13.31	13.127	13.364	0					28	12	3	0	0	0	0.31894	1	2695	2695		52.937	12.879	1	186340	+		36852	21738	25207	25296	37310	37310					0.0180536246932661
SLDLYRLK	8	Unmodified	_SLDLYRLK_					0	0	0			REV__ENSG00000136802|ENST00000372600|LRRC8A	REV__ENSG00000136802|ENST00000372600|LRRC8A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2986145019531	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.961	1	37.961	37.461	38.461	0								0	0	0	1.7419	1	14417	14417		38.806	0	1		+		36853	14879	25208	25297	37311	37311					0.07810333339944009
SLDQDDVSFNS	11	Unmodified	_SLDQDDVSFNS_					0	0	0			REV__ARFGEF3|p.E1064Sfs*10|1|0.29|ENSG00000112379|chr6:138291869-138291869|C/-|frameshift_variant	REV__ARFGEF3|p.E1064Sfs*10|1|0.29|ENSG00000112379|chr6:138291869-138291869|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	613.7609252929688	2	613.762214	1225.50988	0.16491	0.00010122	-1.8402	-0.0011295	-1.6753	-0.0010283	613.7612230785479	36.995	0.18346	36.995	36.865	37.048	0					12	9	2	0	0	0	0.65797	1	12126	12126		31.634	2.4642	1	64420	+		36854	12196	25209	25298	37312	37312					-0.09385875946031774
SLDQLKGL	8	Unmodified	_SLDQLKGL_					0	0	0		ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2556457519531	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.696	1	31.696	31.196	32.196	0								0	0	0	1.7419	1	10944	10944		58.782	0	1				36855	4136	25210	25299	37313	37313					0.05538382523195651
SLDQLSPEQ	9	Unmodified	_SLDQLSPEQ_					0	0	0		ENST00000515789.1_1_4:153590021-153590336:+|nuORF	ENST00000515789.1_1_4:153590021-153590336:+|nuORF	ENST00000515789.1_1_4:153590021-153590336:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7476501464844	2	508.748379	1015.4822	-0.023002	-1.1702E-05	-0.81742	-0.00041586	-0.84042	-0.00042756	508.74751402334635	38.733	0.15796	38.733	38.659	38.817	0					9	6	2	0	0	0	0.28897	1	14729	14729		51.193	0	1	142690			36856	10268	25211	25300	37314	37314					-0.0249173441561652
SLDREGGISL	10	Unmodified	_SLDREGGISL_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7777099609375	2	523.77747	1045.54039	0.51877	0.00027172	-0.16458	-8.6203E-05	0.35419	0.00018551	523.777549101288	32.404	0.28023	32.404	32.317	32.597	0					25	11	3	0	0	0	0.35046	1	10804	10804		61.691	3.445	1	276530			36857	6431	25212	25301	37315	37315					0.019439472296880922
SLDRLKAPL	9	Unmodified	_SLDRLKAPL_					0	0	0			REV__nc|ENSG00000162496|O75911-2|DHRS3	REV__nc|ENSG00000162496|O75911-2|DHRS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.20953369140625	3	338.209836	1011.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.273	1	29.273	28.773	29.773	0								0	0	0	0.20989	1	9515	9515		49.536	3.0793	1		+		36858	15816	25213	25302	37316	37316					0.10234022231293238
SLDSIQTAP	9	Unmodified	_SLDSIQTAP_					0	0	0			REV__ENSG00000008083|ENST00000341776|JARID2	REV__ENSG00000008083|ENST00000341776|JARID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.239990234375	2	466.24019	930.465826	-0.61739	-0.00028785	0.099686	4.6477E-05	-0.51771	-0.00024138	466.2402191736218	18.766	0.21489	18.766	18.643	18.858	0					12	5	3	0	0	0	0.27249	1	4974	4974		52.937	1.6012	1	197370	+		36859	12875	25214	25303	37317	37317					-0.0021881558171799043
SLDSNYDVLP	10	Unmodified	_SLDSNYDVLP_					0	0	0		ENST00000575812.1_1_16:3358749-3362115:+|nuORF	ENST00000575812.1_1_16:3358749-3362115:+|nuORF	ENST00000575812.1_1_16:3358749-3362115:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7681884765625	2	561.769311	1121.52407	0.98101	0.0005511	-2.8542	-0.0016034	-1.8732	-0.0010523	561.7678923077704	23.864	0.42486	23.864	23.713	24.138	0					15	10	2	0	0	0	0.41335	1	7337	7337		54.776	2.6091	1	230840			36860	10825	25215	25304	37318	37318					-0.03183178727090308
SLDSRLSPPAG	11	Unmodified	_SLDSRLSPPAG_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.2930908203125	2	550.290745	1098.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.387	1	31.387	30.887	31.887	0								0	0	0	0.36657	1	10086	10086		42.864	3.6114	1				36861	3480	25216	25305	37319	37319					0.021596361210185933
SLDSSGGRL	9	Unmodified	_SLDSSGGRL_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.232421875	2	446.230156	890.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.896	1	39.896	39.396	40.396	0								0	0	0	0.30504	1	14207	14207		34.173	1.3601	1		+		36862	14732	25217	25306	37320	37320					-0.003845665216431371
SLDVSSIRQ	9	Unmodified	_SLDVSSIRQ_					0	0	0			REV__PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant	REV__PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7740783691406	2	502.772188	1003.52982	2.9275	0.0014719	0.56897	0.00028606	3.4965	0.0017579	502.772499734924	24.471	0.65065	24.471	24.295	24.946	0					32	13	3	0	0	0	0.19605	1	8452	8452		62.107	1.9892	1	1794100	+		36863	13310	25218	25307	37321	37321					0.028199645752579272
SLDWLCHLL	9	Unmodified	_SLDWLCHLL_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2803344726562	2	550.283877	1098.5532	-1.4093	-0.00077553	-2.1151	-0.0011639	-3.5244	-0.0019394	550.7849105703806	33.165	0.22774	33.165	33.024	33.251	0					16	7	3	0	0	0	0.39123	1	11580	11580		42.474	0.078325	1	90945			36864	6453	25219	25308	37322	37322					0.007866870882025978
SLDWRRLWK	9	Unmodified	_SLDWRRLWK_					0	0	0			REV__ENST00000273047.8_1_3:19988598-19988706:+|nuORF	REV__ENST00000273047.8_1_3:19988598-19988706:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.57000732421875	3	420.571768	1258.69348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.332	1	16.332	15.832	16.832	0								0	0	0	0.3119	1	3849	3849		32.812	0	1		+		36865	18107	25220	25309	37323	37323					0.07447607136782608
SLDWVNLR	8	Unmodified	_SLDWVNLR_					0	0	0			REV__nc|ENSG00000162521|Q09028-4|RBBP4	REV__nc|ENSG00000162521|Q09028-4|RBBP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.8516845703125	3	334.85042	1001.52943	3.677	0.0012313	-0.65628	-0.00021976	3.0207	0.0010115	334.8502576494281	19.261	0.4979	19.261	18.871	19.369	0					34	15	3	0	0	0	0.79882	1	5093	5093		21.96	21.96	1	302770	+		36866	13624	25221	25310	37324	37324					0.02872589646040069
SLEAAAALLL	10	Unmodified	_SLEAAAALLL_					0	0	0			REV__nc|ENSG00000123612|Q8NER5-2|ACVR1C	REV__nc|ENSG00000123612|Q8NER5-2|ACVR1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.29241943359375	2	486.292225	970.569897	-0.24083	-0.00011711	1.346	0.00065453	1.1051	0.00053742	486.2926823587607	40.689	0.19237	40.689	40.627	40.819	0					23	10	3	0	0	0	0.357	1	14437	14437		60.972	6.1956	1	188740	+		36867	12059	25222	25311	37325	37325					0.08343511245811897
SLEAGLARDL	10	Unmodified	_SLEAGLARDL_					0	0	0		GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.8621826171875	3	348.860984	1043.56112	3.0341	0.0010585	0.54814	0.00019123	3.5823	0.0012497	348.8610691106677	33.884	0.34134	33.884	33.793	34.134	0					16	7	3	0	0	0	0.66185	1	12938	12938		31.634	0.10446	1	1144000			36868	1116	25223	25312	37326	37326					0.04108537609317864
SLEEDKKK	8	Unmodified	_SLEEDKKK_					0	0	0			REV__ENST00000540555.1_1_11:18503050-18505548:-|nuORF	REV__ENST00000540555.1_1_11:18503050-18505548:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.76898193359375	2	488.769114	975.523675	-0.077706	-3.798E-05	0.0097388	4.76E-06	-0.067967	-3.322E-05	488.7688891532989	21.584	0.16607	21.584	21.526	21.692	0					5	3	2	0	0	0	0.26534	1	7192	7192		94.006	0	1	305750	+		36869	13218	25224	25313	37327	37327					0.034934463437252816
SLEEFHVFVL	10	Unmodified	_SLEEFHVFVL_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B;OTUD7A|p.L398Dfs*31|1|0.05|ENSG00000169918|chr15:31487525-31487526|-/TC|frameshift_variant;OTUD7B|p.G523Afs*2|1|0.07|ENSG00000264522|chr1:149944821-149944821|C/-|frameshift_variant;OTUD7A|p.V467Cfs*62|1|0.44|ENSG00000169918|chr15:31484676-31484676|C/-|frameshift_variant;nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;nc|ENSG00000169918|Q8TE49|OTUD7A	nc|ENSG00000169918|Q8TE49|OTUD7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.21759033203125	3	407.216768	1218.62847	0.13494	5.495E-05	0.64313	0.00026189	0.77807	0.00031684	407.2171387826412	22.759	0.61717	22.759	22.618	23.235	0					17	14	2	0	0	0	0.58189	1	6823	6823		36.447	1.2685	1	97155			36870	8065;6196	25225	25314	37328	37328					0.027905678202841955
SLEEQLSK	8	Unmodified	_SLEEQLSK_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2480773925781	2	467.248015	932.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.346	1	22.346	21.846	22.846	0								0	0	0	1.7419	1	7244	7244		30.504	1.3541	1		+		36871	16499	25226	25315	37329	37329					0.012534709353417384
SLEHVGIL	8	Unmodified	_SLEHVGIL_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.25091552734375	2	434.25036	866.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.027	1	38.027	37.527	38.527	0								0	0	0	1.7419	1	14441	14441		42.474	0	1				36872	486	25227	25316	37330	37330					0.04758399868762808
SLEIEPRN	8	Unmodified	_SLEIEPRN_					0	0	0		SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant	SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.25341796875	2	479.253631	956.49271	0.4651	0.0002229	-1.2208	-0.00058507	-0.75569	-0.00036217	479.25314605627597	26.457	0.35412	26.457	26.287	26.641	0					31	8	5	0	0	0	0.41701	1	9097	9097		68.787	7.0955	1	2697100			36873	2945	25228	25317	37331	37331					0.012722930294785328
SLEIPMLIP	9	Unmodified	_SLEIPMLIP_					0	0	0		nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2	nc|ENSG00000141127|O60256-4|PRPSAP2	nc|ENSG00000141127|O60256-4|PRPSAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.7927551269531	2	506.791004	1011.56745	0.81225	0.00041164	2.861	0.0014499	3.6732	0.0018616	506.792585069163	21.212	0.32787	21.212	21.067	21.395	0					14	9	2	0	0	0	0.41354	1	5801	5801		40.573	9.0428	1	88355			36874	4430	25229	25318	37332	37332					0.06213339516500582
SLEKKLQT	8	Unmodified	_SLEKKLQT_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7816467285156	2	473.782025	945.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.397	1	25.397	24.897	25.897	0								0	0	0	1.7419	1	9008	9008		26.693	0	1		+		36875	15239	25230	25319	37333	37333					0.07454340585979935
SLELDHLNF	9	Unmodified	_SLELDHLNF_					0	0	0		SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant;SCN4A|p.D1309Tfs*4|1|0.19|ENSG00000007314|chr17:63943842-63943842|C/-|frameshift_variant;ENSG00000007314|ENST00000435607|SCN4A	SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant	SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.27490234375	2	544.274564	1086.53457	0.36666	0.00019957	0.53086	0.00028893	0.89753	0.0004885	544.2748419815086	32.965	0.71854	32.965	32.737	33.456	0					53	19	4	0	0	0	0.37197	1	12256	12256		44.117	6.3053	1	2968100			36876	1003	25231	25320	37334	37334					-0.005231512820046191
SLELDQRKA	9	Unmodified	_SLELDQRKA_					0	0	0			REV__RAD52|p.P198L|1|0.15|ENSG00000002016|chr12:916771-916771|G/A|missense_variant	REV__RAD52|p.P198L|1|0.15|ENSG00000002016|chr12:916771-916771|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2935791015625	2	530.293288	1058.57202	1.7301	0.00091746	-1.2049	-0.00063895	0.52521	0.00027851	530.2928037799867	18.925	0.33944	18.925	18.792	19.132	0					16	7	3	0	0	0	0.1424	1	5906	5906		69.628	0	1	1396500	+		36877	21440	25232	25321	37335	37335					0.04507939983614051
SLELGPLPR	9	Unmodified	_SLELGPLPR_					0	0	0			REV__nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	REV__nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2901306152344	2	491.290017	980.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.856	1	27.856	27.356	28.356	0								0	0	0	0.24724	1	9167	9167		44.117	10.601	1		+		36878	16567	25233	25322	37336	37336					0.07442046822905013
SLELLFQHP	9	Unmodified	_SLELLFQHP_					0	0	0		ENSG00000116183|ENST00000367662|PAPPA2	ENSG00000116183|ENST00000367662|PAPPA2	ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2950439453125	2	542.295299	1082.57605	2.0394	0.0011059	-1.9132	-0.0010375	0.12614	6.8403E-05	542.2942471839183	45.171	0.11844	45.171	45.128	45.246	0					9	5	2	0	0	0	0.47038	1	18108	18108		35.618	0	1	62256			36879	2968	25234	25323	37337	37337					0.03806029477323136
SLELRKIGV	9	Unmodified	_SLELRKIGV_					0	0	0		ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.8817443847656	3	338.88172	1013.62333	3.0186	0.001023	-3.2912	-0.0011153	-0.27263	-9.2388E-05	338.88070798443647	14.887	0.16711	14.887	14.828	14.995	0					9	3	4	0	0	0	0.25716	1	3820	3820		54.776	1.8396	1	707570			36880	6818	25235	25324	37338	37338					0.1170630874833023
SLELRRYF	8	Unmodified	_SLELRRYF_					0	0	0		ENSG00000147896|ENST00000276943|IFNK	ENSG00000147896|ENST00000276943|IFNK	ENSG00000147896|ENST00000276943|IFNK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.8695373535156	3	361.869703	1082.58728	-0.93811	-0.00033947	0.34252	0.00012395	-0.59559	-0.00021552	361.8699149092971	32.987	0.16518	32.987	32.936	33.101	0					13	7	2	0	0	0	0.66372	1	11050	11050		38.806	7.2763	1	163510			36881	4806	25236	25325	37339	37339					0.04928851571457926
SLELSQAL	8	Unmodified	_SLELSQAL_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-5|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7419738769531	2	430.739825	859.465098	0.97091	0.00041821	3.4761	0.0014973	4.447	0.0019155	430.74164515705166	19.421	0.26317	19.421	19.313	19.576	0					7	5	2	0	0	0	0.43813	1	6150	6150		66.429	5.4573	1	765690			36882	3223	25237	25326	37340	37340					0.029743897692469545
SLEQAISAL	9	Unmodified	_SLEQAISAL_					0	0	0			REV__LRRC14B|p.R273Q|1|0.11|ENSG00000185028|chr5:192356-192356|G/A|missense_variant	REV__LRRC14B|p.R273Q|1|0.11|ENSG00000185028|chr5:192356-192356|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2582092285156	2	466.258382	930.502212	0.44238	0.00020626	-2.1736	-0.0010135	-1.7312	-0.0008072	466.2578034216257	22.643	0.43291	22.643	22.384	22.817	0					28	10	3	0	0	0	0.10915	1	7422	7422		77.318	3.0625	1	659350	+		36883	20846	25238	25327	37341	37341					0.034180613149942474
SLEQRRGEA	9	Unmodified	_SLEQRRGEA_					0	0	0		ENST00000261038.5_1_3:122514002-122525788:+|nuORF;ENST00000477647.1_1_3:122514002-122598222:+|nuORF	ENST00000261038.5_1_3:122514002-122525788:+|nuORF	ENST00000261038.5_1_3:122514002-122525788:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2745971679688	2	523.272887	1044.53122	1.7925	0.00093795	1.1627	0.00060841	2.9552	0.0015464	523.2734833271646	36.247	0.72451	36.247	36.052	36.777	0					105	21	7	0	0	0	0.12834	1	14061	14061		72.879	4.0924	1	48823000			36884	8291	25239	25328	37342	37342					0.010735986639929251
SLESLIQEPVS	11	Unmodified	_SLESLIQEPVS_					0	0	0			REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	601.8204956054688	2	601.319168	1200.62378	0.14289	8.5922E-05	-0.37006	-0.00022252	-0.22717	-0.0001366	601.3188474663087	28.754	0.11992	28.754	28.702	28.822	0					12	4	3	0	0	0	0.50799	1	8999	8999		43.651	0.78652	1	224130	+		36885	20614	25240	25329	37343	37343					0.03149638886861794
SLESLIQEPVS	11	Unmodified	_SLESLIQEPVS_					0	0	0			REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.3191528320312	2	601.319168	1200.62378	-0.22321	-0.00013422	0.55122	0.00033146	0.32801	0.00019724	601.3194684906763	29.039	0.25023	29.039	28.918	29.169	0					18	6	4	0	0	0	0.062728	1	10316	10316		99.013	30.167	1	1102700	+		36886	20614	25240	25329	37344	37344					0.03149638886861794
SLESLIQEPVS	11	Unmodified	_SLESLIQEPVS_					0	0	0			REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.3197021484375	2	601.319168	1200.62378	-0.58215	-0.00035006	0.23706	0.00014255	-0.3451	-0.00020751	601.3194289298302	28.8	0.22223	28.8	28.693	28.915	0					20	8	3	0	0	0	0.30836	1	9300	9300		61.691	5.2575	1	362620	+		36887	20614	25240	25329	37345	37345					0.03149638886861794
SLESLIQEPVS	11	Unmodified	_SLESLIQEPVS_					0	0	0			REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.3202514648438	2	601.319168	1200.62378	0.89358	0.00053733	-0.54846	-0.0003298	0.34512	0.00020752	601.3187095434878	29.016	0.42358	29.016	28.911	29.334	0					28	9	5	0	0	0	0.13966	1	10689	10689		81.525	16.06	1	2222600	+		36888	20614	25240	25329	37346	37346					0.03149638886861794
SLESLIQEPVS	11	Unmodified	_SLESLIQEPVS_					0	0	0			REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	REV__ENST00000606011.1_1_13:96328766-96328880:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.3193359375	2	601.319168	1200.62378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.98	1	28.98	28.48	29.48	0								0	0	0	0.041817	1	10563	10563		93.598	26.104	1		+		36889	20614	25240	25329	37347	37347					0.03149638886861794
SLETFTQLV	9	Unmodified	_SLETFTQLV_					0	0	0			REV__TREH|p.Q114Sfs*29|1|0.12|ENSG00000118094|chr11:118662964-118662964|G/-|frameshift_variant	REV__TREH|p.Q114Sfs*29|1|0.12|ENSG00000118094|chr11:118662964-118662964|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7822875976562	2	519.279315	1036.54408	0.97949	0.00050863	0.35814	0.00018597	1.3376	0.0006946	519.7818453418831	34.031	0.11069	34.031	33.961	34.071	0					6	3	2	0	0	0	0.44593	1	12017	12017		37.812	2.1932	1	71731	+		36890	14213	25241	25330	37348	37348					0.027266170035318282
SLEVAGRGAW	10	Unmodified	_SLEVAGRGAW_					0	0	0			REV__chr16:3000118-3000714|144|12.4|0.41|4.9|+|1|GREP1,GREP1|2	REV__chr16:3000118-3000714|144|12.4|0.41|4.9|+|1|GREP1,GREP1|2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2744140625	2	523.274898	1044.53524	-1.2858	-0.00067282	0.49124	0.00025706	-0.79454	-0.00041576	523.2750488903785	36.064	0.68303	36.064	35.851	36.534	0					82	27	5	0	0	0	0.52275	1	12973	12973		42.864	42.864	1	13239000	+		36891	12474	25242	25331	37349	37349					0.014756881576886371
SLEVKASK	8	Unmodified	_SLEVKASK_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2554931640625	2	431.255643	860.496732	0.19165	8.265E-05	-0.54563	-0.00023531	-0.35398	-0.00015266	431.25546186164803	27.313	0.22737	27.313	27.18	27.407	0					10	5	2	0	0	0	0.66095	1	9517	9517		39.253	0	1	99097			36892	881	25243	25332	37350	37350					0.06090382523188964
SLEVRSSK	8	Unmodified	_SLEVRSSK_					0	0	0		AluSz_dup71343|chr13:27959735-27960035:-|1.3846622943211524|0.0573341797523608|4.59|474.0|2|1|sense	AluSz_dup71343|chr13:27959735-27960035:-|1.3846622943211524|0.0573341797523608|4.59|474.0|2|1|sense	AluSz_dup71343|chr13:27959735-27960035:-|1.3846622943211524|0.0573341797523608|4.59|474.0|2|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.25836181640625	2	453.256174	904.497795	3.9391	0.0017854	-0.07953	-3.6047E-05	3.8595	0.0017494	453.25612119455644	33.369	0.31031	33.369	33.216	33.526	0					34	12	4	0	0	0	0.49216	1	11171	11171		60.972	0.85368	1	860840			36893	136	25244	25333	37351	37351					0.0417259689210141
SLFAQVLQ	8	Unmodified	_SLFAQVLQ_					0	0	0			REV__ENSG00000137875|ENST00000260442|BCL2L10	REV__ENSG00000137875|ENST00000260442|BCL2L10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25970458984375	2	453.258185	904.501818	2.5151	0.00114	0.49136	0.00022271	3.0065	0.0013627	453.2584853791121	27.485	0.42273	27.485	27.323	27.746	0					25	8	5	0	0	0	0.24915	1	9828	9828		102.77	5.3007	1	3457300	+		36894	14943	25245	25334	37352	37352					0.04574686385797122
SLFEGSLSK	9	Unmodified	_SLFEGSLSK_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.2580871582031	2	484.258382	966.502212	0.012253	5.9336E-06	0.57108	0.00027655	0.58333	0.00028248	484.25824916074635	34.836	0.18203	34.836	34.727	34.909	0					12	8	2	0	0	0	0.28897	1	11398	11398		51.193	6.8155	1	70817			36895	1867	25246	25335	37353	37353					0.017620613150029385
SLFEGSLSK	9	Unmodified	_SLFEGSLSK_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2583312988281	2	484.258382	966.502212	0.62516	0.00030274	-0.74759	-0.00036202	-0.12243	-5.9286E-05	484.2578502696629	35.102	0.28576	35.102	34.993	35.279	0					14	7	3	0	0	0	0.082776	1	13136	13136		83.647	25.417	1	438500			36896	1867	25246	25335	37354	37354					0.017620613150029385
SLFEGSLSK	9	Unmodified	_SLFEGSLSK_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2590637207031	2	484.258382	966.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.862	1	34.862	34.362	35.362	0								0	0	0	0.19847	1	11774	11774		51.193	3.2771	1				36897	1867	25246	25335	37355	37355					0.017620613150029385
SLFEGSLSK	9	Unmodified	_SLFEGSLSK_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2582702636719	2	484.258382	966.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.047	1	35.047	34.547	35.547	0								0	0	0	0.14961	1	13493	13493		59.931	3.2097	1				36898	1867	25246	25335	37356	37356					0.017620613150029385
SLFELLPF	8	Unmodified	_SLFELLPF_					0	0	0			REV__ENSG00000104408|ENST00000220849|EIF3E	REV__ENSG00000104408|ENST00000220849|EIF3E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2684326171875	2	483.270761	964.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.876	1	29.876	29.376	30.376	0								0	0	0	1.7419	1	10996	10996		33.516	0.70317	1		+		36899	13725	25247	25336	37357	37357					0.043287411883852656
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.2577819824219	2	453.258185	904.501818	0.59195	0.00026831	-0.96912	-0.00043926	-0.37716	-0.00017095	453.25777024996603	33.328	0.1571	33.328	33.209	33.366	0					10	6	2	0	0	0	0.27249	1	10814	10814		52.937	10.541	1	93758			36900	7128	25248	25337	37358	37358					0.04574686385797122
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2579345703125	2	453.258185	904.501818	0.29497	0.0001337	-0.73015	-0.00033095	-0.43519	-0.00019725	453.25781691160154	33.563	0.29884	33.563	33.426	33.725	0					18	7	3	0	0	0	0.095583	1	12411	12411		80.455	24.95	1	699880			36901	7128	25248	25337	37359	37359					0.04574686385797122
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2580871582031	2	453.258185	904.501818	-0.122	-5.5298E-05	-0.35685	-0.00016175	-0.47885	-0.00021704	453.2579850969011	33.537	0.54149	33.537	33.309	33.851	0					38	13	5	0	0	0	0.24334	1	12815	12815		56.434	6.9922	1	6395500			36902	7128	25248	25337	37360	37360					0.04574686385797122
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2584228515625	2	453.258185	904.501818	0.30562	0.00013852	-0.67742	-0.00030705	-0.3718	-0.00016852	453.25785133591904	33.312	0.40288	33.312	33.157	33.56	0					28	11	4	0	0	0	0.078509	1	11668	11668		85.161	21.855	1	1244200			36903	7128	25248	25337	37361	37361					0.04574686385797122
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25787353515625	2	453.258185	904.501818	-0.41606	-0.00018858	-0.40883	-0.00018531	-0.82489	-0.00037389	453.25804174433995	33.509	0.49283	33.509	33.3	33.793	0					36	10	5	0	0	0	0.063171	1	12729	12729		90.601	30.483	1	13482000			36904	7128	25248	25337	37362	37362					0.04574686385797122
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2580261230469	2	453.258185	904.501818	0.87736	0.00039767	-2.1227	-0.00096211	-1.2453	-0.00056444	453.25752394654506	33.492	0.36746	33.492	33.332	33.7	0					19	7	3	0	0	0	0.078509	1	12746	12746		85.161	16.676	1	1462100			36905	7128	25248	25337	37363	37363					0.04574686385797122
SLFITTINK	9	Unmodified	_SLFITTINK_					0	0	0		ENSG00000132423|ENST00000254759|COQ3	ENSG00000132423|ENST00000254759|COQ3	ENSG00000132423|ENST00000254759|COQ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.8057250976562	2	518.8055	1035.59645	1.5988	0.00082946	-1.7748	-0.00092076	-0.17598	-9.1298E-05	518.8049668925087	39.994	0.18926	39.994	39.929	40.118	0					12	6	2	0	0	0	0.27249	1	15755	15755		52.937	13.684	1	97226			36906	3787	25249	25338	37364	37364					0.08007200137149084
SLFITTINK	9	Unmodified	_SLFITTINK_					0	0	0		ENSG00000132423|ENST00000254759|COQ3	ENSG00000132423|ENST00000254759|COQ3	ENSG00000132423|ENST00000254759|COQ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.8060913085938	2	518.8055	1035.59645	3.3456	0.0017357	-2.5842	-0.0013407	0.7614	0.00039502	518.8042972001175	39.951	0.32382	39.951	39.768	40.092	0					10	7	2	0	0	0	0.28897	1	15838	15838		51.193	8.7966	1	154540			36907	3787	25249	25338	37365	37365					0.08007200137149084
SLFIWGPLY	9	Unmodified	_SLFIWGPLY_					0	0	0			REV__ENSG00000234224|ENST00000455783|TMEM229A	REV__ENSG00000234224|ENST00000455783|TMEM229A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2962036132812	2	548.29731	1094.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.129	1	40.129	39.629	40.629	0								0	0	0	0.20652	1	12993	12993		50.025	7.5501	1		+		36908	17655	25250	25339	37366	37366					0.03656118971025535
SLFKIPGLN	9	Unmodified	_SLFKIPGLN_					0	0	0			REV__nc|ENSG00000158296|Q8WWT9-3|SLC13A3	REV__nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.79656982421875	2	494.794935	987.575317	0.68114	0.00033703	2.7789	0.001375	3.46	0.001712	494.79637275378343	38.308	0.22782	38.308	38.195	38.423	0					14	8	2	0	0	0	0.41958	1	15027	15027		40.778	3.6191	1	221680	+		36909	21082	25251	25340	37367	37367					0.08103234828274708
SLFLEDEV	8	Unmodified	_SLFLEDEV_					0	0	0		tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2372741699219	2	476.237116	950.459678	0.63047	0.00030025	0.13047	6.2135E-05	0.76094	0.00036239	476.2371785474556	36.935	0.95377	36.935	36.771	37.725	0					78	29	4	0	0	0	0.70055	1	14379	14379		33.516	33.516	1	3591300			36910	22907	25252	25341	37368	37368					-0.017533338132352583
SLFNAMNRFI	10	Unmodified	_SLFNAMNRFI_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1;MID1IP1|p.G23C|1|0.06|ENSG00000165175|chrX:38805013-38805013|G/T|missense_variant	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.8768310546875	3	404.877981	1211.61211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.112	1	47.112	46.612	47.612	0								0	0	0	0.4201	1	18824	18824		16.717	0	1				36911	5770	25253	25342	37369	37369					0.01477163382537583
SLFNTGFLK	9	Unmodified	_SLFNTGFLK_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7850341796875	2	513.784567	1025.55458	1.4605	0.00075039	-0.99801	-0.00051276	0.46251	0.00023763	513.7841821607169	47.22	0.19219	47.22	47.122	47.315	0					16	8	3	0	0	0	0.10915	1	18866	18866		77.318	6.0219	1	176190			36912	3226	25254	25343	37370	37370					0.04282644448608153
SLFQLTKSQ	9	Unmodified	_SLFQLTKSQ_					0	0	0			REV__ENST00000538137.6_1_18:22930939-22932115:-|nuORF	REV__ENST00000538137.6_1_18:22930939-22932115:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2929077148438	2	526.292756	1050.57096	0.46389	0.00024414	-1.3493	-0.0007101	-0.88537	-0.00046596	526.2918462779052	18.903	0.23781	18.903	18.827	19.065	0					10	7	2	0	0	0	0.33548	1	5032	5032		47.96	7.9014	1	459850	+		36913	20118	25255	25344	37371	37371					0.04769725614687559
SLFQVITY	8	Unmodified	_SLFQVITY_					0	0	0		ENST00000206595.10_1_14:31062768-31066635:+|nuORF	ENST00000206595.10_1_14:31062768-31066635:+|nuORF	ENST00000206595.10_1_14:31062768-31066635:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.268798828125	2	485.765843	969.517133	-0.56126	-0.00027264	-3.1034	-0.0015075	-3.6647	-0.0017802	485.76400782806087	37.618	0.50574	37.618	37.315	37.821	0					21	10	4	0	0	0	0.7126	1	14619	14619		31.955	5.1588	1	823620			36914	8152	25256	25345	37372	37372					0.03115553182988151
SLFRASSAGKV	11	Unmodified	_SLFRASSAGKV_					0	0	0		ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.88043212890625	3	374.880379	1121.61931	-0.36089	-0.00013529	0.19552	7.3296E-05	-0.16537	-6.1994E-05	374.8804978888438	19.5	0.21436	19.5	19.442	19.656	0					9	4	3	0	0	0	0.51875	1	6052	6052		37.6	7.2822	1	894900			36915	7713	25257	25346	37373	37373					0.06336219254603748
SLFSAFAALRQ	11	Unmodified	_SLFSAFAALRQ_					0	0	0			REV__nc|ENSG00000175701|Q8NCU8-1|MTLN	REV__nc|ENSG00000175701|Q8NCU8-1|MTLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.5584411621094	3	404.224146	1209.65061	-0.58161	-0.0002351	0.35982	0.00014545	-0.22179	-8.9654E-05	404.2242703643471	39.979	0.19695	39.979	39.883	40.08	0					9	4	3	0	0	0	0.72154	1	15829	15829		28.577	28.577	1	237220	+		36916	21125	25258	25347	37374	37374					0.05416792288679062
SLFSALLRI	9	Unmodified	_SLFSALLRI_					0	0	0		TM4SF19|p.C182R|1|0.24|ENSG00000145107|chr3:196323903-196323903|A/G|missense_variant	TM4SF19|p.C182R|1|0.24|ENSG00000145107|chr3:196323903-196323903|A/G|missense_variant	TM4SF19|p.C182R|1|0.24|ENSG00000145107|chr3:196323903-196323903|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.3169250488281	2	510.316035	1018.61752	1.3676	0.00069793	0.58899	0.00030057	1.9566	0.0009985	510.31625818430916	50.417	0.094215	50.417	50.383	50.477	0					9	5	2	0	0	0	0.39215	1	19883	19883		42.396	4.5846	1	140360			36917	22539	25259	25348	37375	37375					0.10895210236662933
SLFSGSFSK	9	Unmodified	_SLFSGSFSK_					0	0	0		ENST00000264716.8_1_2:28615973-28616156:+|nuORF	ENST00000264716.8_1_2:28615973-28616156:+|nuORF	ENST00000264716.8_1_2:28615973-28616156:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2449035644531	2	480.245275	958.475997	-0.11079	-5.3206E-05	-0.10022	-4.8131E-05	-0.21101	-0.00010134	480.24520296671295	38.047	0.22077	38.047	37.964	38.184	0					17	7	3	0	0	0	0.13726	1	14918	14918		70.816	17.465	1	451340			36918	8336	25260	25349	37376	37376					-0.0049020785647826415
SLFSLWAALA	10	Unmodified	_SLFSLWAALA_					0	0	0		ENST00000472789.1_1_7:150936247-150937287:-|nuORF	ENST00000472789.1_1_7:150936247-150937287:-|nuORF	ENST00000472789.1_1_7:150936247-150937287:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7982788085938	2	539.800217	1077.58588	-1.4778	-0.00079773	-0.91993	-0.00049658	-2.3977	-0.0012943	539.7994929345198	30.77	0.14995	30.77	30.714	30.864	0					6	4	2	0	0	0	0.51121	1	10522	10522		44.117	4.864	1	97081			36919	9869	25261	25350	37377	37377					0.05019217482708882
SLFSNVVTK	9	Unmodified	_SLFSNVVTK_					0	0	0		ENST00000467388.1_1_2:216203501-216211697:+|nuORF;ENST00000446622.5_1_2:216199652-216212358:+|nuORF;ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ENST00000467388.1_1_2:216203501-216211697:+|nuORF	ENST00000467388.1_1_2:216203501-216211697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7820739746094	2	497.782025	993.549496	0.19224	9.5692E-05	0.64067	0.00031892	0.83291	0.00041461	497.78230418639833	37.537	0.18901	37.537	37.45	37.639	0					18	10	3	0	0	0	0.38666	1	12282	12282		42.864	1.4377	1	160660			36920	249	25262	25351	37378	37378					0.05246340585995313
SLFSNVVTK	9	Unmodified	_SLFSNVVTK_					0	0	0		ENST00000467388.1_1_2:216203501-216211697:+|nuORF;ENST00000446622.5_1_2:216199652-216212358:+|nuORF;ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ENST00000467388.1_1_2:216203501-216211697:+|nuORF	ENST00000467388.1_1_2:216203501-216211697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7816162109375	2	497.782025	993.549496	0.69996	0.00034843	-0.89998	-0.00044799	-0.20001	-9.9564E-05	497.78149284926934	37.851	0.28939	37.851	37.767	38.056	0					30	12	3	0	0	0	0.082776	1	14357	14357		83.647	20.113	1	703850			36921	249	25262	25351	37379	37379					0.05246340585995313
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2660217285156	2	485.266207	968.517862	-0.012512	-6.0714E-06	-0.50924	-0.00024712	-0.52175	-0.00025319	485.26593809984695	31.047	0.48579	31.047	30.947	31.432	0					50	19	4	0	0	0	0.099922	1	9930	9930		79.451	2.6769	1	6233400			36922	1308	25263	25352	37380	37380					0.032343478320512986
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2662658691406	2	485.266207	968.517862	0.65854	0.00031957	-0.9541	-0.00046299	-0.29557	-0.00014343	485.26588766508206	31.323	0.94163	31.323	31.169	32.111	0					64	23	6	0	0	0	0.071197	1	11368	11368		87.754	10.98	1	33390000			36923	1308	25263	25352	37381	37381					0.032343478320512986
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2657470703125	2	485.266207	968.517862	-0.091031	-4.4174E-05	-0.069836	-3.3889E-05	-0.16087	-7.8064E-05	485.2662614301688	31.308	1.0203	31.308	31.188	32.208	0					60	22	6	0	0	0	0.087861	1	11769	11769		82.241	16.437	1	42569000			36924	1308	25263	25352	37382	37382					0.032343478320512986
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2657165527344	2	485.266207	968.517862	0.65566	0.00031817	-1.1498	-0.00055797	-0.49417	-0.0002398	485.2656259187625	31.302	0.18222	31.302	31.216	31.398	0					11	4	3	0	0	0	0.2873	1	11794	11794		51.335	0	1	992970			36925	1308	25263	25352	37383	37383					0.032343478320512986
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.26568603515625	2	485.266207	968.517862	0.33195	0.00016108	-0.89577	-0.00043469	-0.56382	-0.0002736	485.26574599399163	31.089	0.50412	31.089	30.958	31.463	0					35	13	4	0	0	0	0.099922	1	10639	10639		79.451	16.145	1	6781500			36926	1308	25263	25352	37384	37384					0.032343478320512986
SLFVNLGIN	9	Unmodified	_SLFVNLGIN_					0	0	0			REV__FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	REV__FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.77777099609375	2	488.776742	975.538931	-1.25	-0.00061097	1.5225	0.00074417	0.2725	0.00013319	488.7775670458769	31.028	0.19548	31.028	30.87	31.065	0					11	7	2	0	0	0	0.37197	1	10235	10235		44.117	1.6423	1	85567	+		36927	14657	25264	25353	37385	37385					0.050183579315557836
SLFVNLGIN	9	Unmodified	_SLFVNLGIN_					0	0	0			REV__FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	REV__FIGNL1|p.K309Sfs*16|2|0.21|ENSG00000132436|chr7:50446362-50446362|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.77703857421875	2	488.776742	975.538931	0.7855	0.00038394	-0.22766	-0.00011127	0.55785	0.00027266	488.7766480610617	31.211	0.46175	31.211	31.059	31.521	0					20	9	3	0	0	0	0.44593	1	11635	11635		37.812	2.1932	1	426290	+		36928	14657	25264	25353	37386	37386					0.050183579315557836
SLGAAAVRPN	10	Unmodified	_SLGAAAVRPN_					0	0	0			REV__ENST00000333003.9_1_12:95461150-95467288:-|nuORF	REV__ENST00000333003.9_1_12:95461150-95467288:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2717590332031	2	478.269616	954.524678	-0.44459	-0.00021263	-1.7656	-0.00084445	-2.2102	-0.0010571	478.26864442114373	13.047	0.75943	13.047	12.832	13.591	0					42	17	4	0	0	0	0.49411	1	3033	3033		45.972	1.8554	1	2348100	+		36929	18396	25265	25354	37387	37387					0.04559705503265832
SLGAAVVPAL	10	Unmodified	_SLGAAVVPAL_					0	0	0		LCE2B|p.Q35Sfs*39|1|0.2|ENSG00000159455|chr1:152686943-152686943|C/-|frameshift_variant;LCE2B|p.P13Lfs*61|1|0.24|ENSG00000159455|chr1:152686877-152686877|C/-|frameshift_variant	LCE2B|p.Q35Sfs*39|1|0.2|ENSG00000159455|chr1:152686943-152686943|C/-|frameshift_variant	LCE2B|p.Q35Sfs*39|1|0.2|ENSG00000159455|chr1:152686943-152686943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.27362060546875	2	449.273835	896.533118	-2.5983	-0.0011674	2.1871	0.00098261	-0.41122	-0.00018475	449.2749044067819	26.503	0.18194	26.503	26.413	26.595	0					6	4	2	0	0	0	0.56015	1	8550	8550		38.806	3.1879	1	132060			36930	11310	25266	25355	37388	37388					0.08071259419898524
SLGADRVQI	9	Unmodified	_SLGADRVQI_					0	0	0			REV__ENST00000521594.1_1_5:150076301-150080167:-|nuORF	REV__ENST00000521594.1_1_5:150076301-150080167:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7688293457031	2	479.769448	957.524344	0.027849	1.3361E-05	-0.98007	-0.00047021	-0.95223	-0.00045685	479.76890078032017	29.894	0.21795	29.894	29.817	30.035	0					13	8	2	0	0	0	0.36892	1	9473	9473		44.377	0	1	73335	+		36931	13367	25267	25356	37389	37389					0.04388285783431911
SLGAEPKQK	9	Unmodified	_SLGAEPKQK_					0	0	0			REV__nc|ENSG00000126467|Q9UJT2-2|TSKS	REV__nc|ENSG00000126467|Q9UJT2-2|TSKS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2718200683594	2	479.271824	956.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.647	1	12.647	12.147	13.147	0								0	0	0	0.32356	1	2518	2518		30.504	0	1		+		36932	14469	25268	25357	37390	37390					0.049091699261907706
SLGAFVTLQR	10	Unmodified	_SLGAFVTLQR_					0	0	0		nc|ENSG00000131095|P14136-2|GFAP	nc|ENSG00000131095|P14136-2|GFAP	nc|ENSG00000131095|P14136-2|GFAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.5450744628906	3	364.545108	1090.61349	0.84096	0.00030657	-1.2402	-0.00045212	-0.39928	-0.00014555	364.5447529708895	31.061	1.4421	31.061	30.889	32.331	0					93	35	6	0	0	0	0.32758	1	11235	11235		66.962	22.585	1	103630000			36933	11523	25269	25358	37391	37391					0.07181120742939129
SLGAFVTLQR	10	Unmodified	_SLGAFVTLQR_					0	0	0		nc|ENSG00000131095|P14136-2|GFAP	nc|ENSG00000131095|P14136-2|GFAP	nc|ENSG00000131095|P14136-2|GFAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.31396484375	2	546.314023	1090.61349	-1.5011	-0.00082009	1.6145	0.00088203	0.11337	6.1936E-05	546.3147265645201	30.829	1.0986	30.829	30.68	31.778	0					83	29	5	0	0	0	0.41335	1	10687	10687		54.776	0.053964	1	16027000			36934	11523	25269	25358	37392	37392					0.07181120742939129
SLGAGGDSLK	10	Unmodified	_SLGAGGDSLK_					0	0	0			REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.740234375	2	452.740357	903.46616	0.67927	0.00030753	-1.1775	-0.0005331	-0.49822	-0.00022556	452.73982804780115	14.657	0.32606	14.657	14.378	14.704	0					13	8	2	0	0	0	0.46128	1	3597	3597		49.536	0.094497	1	137330	+		36935	16023	25270	25359	37393	37393					0.010566041381366631
SLGAKRFITA	10	Unmodified	_SLGAKRFITA_					0	0	0			REV__ENST00000446274.5_1_9:131219641-131231529:+|nuORF	REV__ENST00000446274.5_1_9:131219641-131231529:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.3162231445312	2	532.316566	1062.61858	0.36923	0.00019654	0.41295	0.00021982	0.78218	0.00041637	532.3165635297635	22.205	0.13029	22.205	22.12	22.25	0					9	4	3	0	0	0	0.25899	1	6237	6237		60.118	0	1	100440	+		36936	18674	25271	25360	37394	37394					0.0897742460556401
SLGAKTASY	9	Unmodified	_SLGAKTASY_					0	0	0			REV__tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	REV__tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.23724365234375	2	449.23745	896.460347	0.55364	0.00024872	-0.81274	-0.00036511	-0.2591	-0.0001164	449.2369488353419	19.954	0.1083	19.954	19.889	19.997	0					4	2	2	0	0	0	0.14603	1	5524	5524		68.787	10.976	1	148010	+		36937	21983	25272	25361	37395	37395					0.007975056264740488
SLGASSFVEEE	11	Unmodified	_SLGASSFVEEE_					0	0	0		ENST00000511247.1_1_4:517319-518397:+|nuORF;nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG	ENST00000511247.1_1_4:517319-518397:+|nuORF	ENST00000511247.1_1_4:517319-518397:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.7628784179688	2	577.764226	1153.5139	-0.41716	-0.00024102	-1.939	-0.0011203	-2.3562	-0.0013613	577.7630809117933	26.401	0.89007	26.401	25.721	26.611	0					23	16	2	0	0	0	0.3865	1	9408	9408		52.937	3.4007	1	307100			36938	6475	25273	25362	37396	37396					-0.05671786452330707
SLGATQLSEL	10	Unmodified	_SLGATQLSEL_					0	0	0			REV__EPM2AIP1|p.N430Kfs*13|1|0.28|ENSG00000178567|chr3:36991788-36991789|-/T|frameshift_variant	REV__EPM2AIP1|p.N430Kfs*13|1|0.28|ENSG00000178567|chr3:36991788-36991789|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.774169921875	2	509.774396	1017.53424	1.3557	0.0006911	-1.9141	-0.00097575	-0.5584	-0.00028466	509.77338309636514	17.875	0.16393	17.875	17.767	17.931	0					7	3	3	0	0	0	0.32758	1	5254	5254		64.207	0.67341	1	641410	+		36939	16736	25274	25363	37397	37397					0.026174289981327092
SLGAWPGPPGG	11	Unmodified	_SLGAWPGPPGG_					0	0	0		ENST00000469750.5_1_7:2580597-2582612:-|nuORF	ENST00000469750.5_1_7:2580597-2582612:-|nuORF	ENST00000469750.5_1_7:2580597-2582612:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2506408691406	2	498.250892	994.48723	-0.72916	-0.0003633	0.48172	0.00024002	-0.24743	-0.00012328	498.2511790918117	29.773	0.80888	29.773	29.6	30.408	0					37	16	3	0	0	0	0.61618	1	10927	10927		35.618	0	1	292450			36940	9831	25275	25364	37398	37398					-0.01023385762334783
SLGCPSVVPSP	11	Unmodified	_SLGCPSVVPSP_					0	0	0		ENSG00000166444|ENST00000313726|DENND2B	ENSG00000166444|ENST00000313726|DENND2B	ENSG00000166444|ENST00000313726|DENND2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7675170898438	2	521.765517	1041.51648	0.079471	4.1465E-05	1.1889	0.00062033	1.2684	0.0006618	521.76599724155	26.322	0.64236	26.322	25.986	26.628	0					39	15	3	0	0	0	0.40479	1	9090	9090		51.193	8.7182	1	960900			36941	5902	25276	25365	37399	37399					-0.00261609528365625
SLGDVARI	8	Unmodified	_SLGDVARI_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.7401123046875	2	415.74016	829.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.668	1	16.668	16.168	17.168	0								0	0	0	1.7419	1	4808	4808		40.778	1.5253	1				36942	4488	25277	25366	37400	37400					0.044212292089468974
SLGETQSTI	9	Unmodified	_SLGETQSTI_					0	0	0			REV__nc|ENSG00000182511|P07332-4|FES	REV__nc|ENSG00000182511|P07332-4|FES	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2375793457031	2	468.237647	934.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.615	1	39.615	39.115	40.115	0								0	0	0	0.24544	1	14114	14114		44.377	1.9027	1		+		36943	16886	25278	25367	37401	37401					-0.00911119444333508
SLGFIVTIAM	10	Unmodified	_SLGFIVTIAM_					0	0	0			REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2984008789062	2	526.296453	1050.57835	3.4593	0.0018206	0.44239	0.00023283	3.9017	0.0020534	526.2966783255121	22.713	0.56135	22.713	22.605	23.167	0					23	11	3	0	0	0	0.39827	1	7604	7604		44.117	0	1	6085600	+		36944	21833	25279	25368	37402	37402					0.05508741890798774
SLGGETKIGAW	11	Unmodified	_SLGGETKIGAW_					0	0	0			REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.2960815429688	2	559.795663	1117.57677	0.12377	6.9284E-05	-1.6152	-0.00090421	-1.4915	-0.00083493	559.7957977949897	34.882	0.16812	34.882	34.827	34.996	0					14	7	2	0	0	0	0.67983	1	11792	11792		29.551	1.6685	1	62592	+		36945	13717	25280	25369	37403	37403					0.022688241263722375
SLGGHSISK	9	Unmodified	_SLGGHSISK_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573;ZNF573|p.V65L|1|0.4|ENSG00000189144|chr19:37771573-37771573|C/A|missense_variant	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2431640625	2	443.243067	884.47158	0.24937	0.00011053	-0.5747	-0.00025473	-0.32533	-0.0001442	443.2427064584092	17.271	0.10515	17.271	17.203	17.308	0					5	3	2	0	0	0	0.0055674	1	4083	4083		155.58	43.174	1	188920			36946	7305	25281	25370	37404	37404					0.024723277206135208
SLGGHSISK	9	Unmodified	_SLGGHSISK_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573;ZNF573|p.V65L|1|0.4|ENSG00000189144|chr19:37771573-37771573|C/A|missense_variant	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.24285888671875	2	443.243067	884.47158	0.5812	0.00025761	-1.0982	-0.00048678	-0.51702	-0.00022917	443.2425807829124	17.582	0.20816	17.582	17.499	17.708	0					12	5	3	0	0	0	0.0059092	1	4996	4996		154.12	35.375	1	2558300			36947	7305	25281	25370	37405	37405					0.024723277206135208
SLGGHSISK	9	Unmodified	_SLGGHSISK_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573;ZNF573|p.V65L|1|0.4|ENSG00000189144|chr19:37771573-37771573|C/A|missense_variant	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.24334716796875	2	443.243067	884.47158	-0.50799	-0.00022516	1.3021	0.00057713	0.79407	0.00035197	443.24355072858975	17.34	0.11904	17.34	17.27	17.389	0					5	3	2	0	0	0	0.035062	1	4312	4312		104.06	16.36	1	190790			36948	7305	25281	25370	37406	37406					0.024723277206135208
SLGGHSISK	9	Unmodified	_SLGGHSISK_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573;ZNF573|p.V65L|1|0.4|ENSG00000189144|chr19:37771573-37771573|C/A|missense_variant	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2427978515625	2	443.243067	884.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.546	1	17.546	17.046	18.046	0								0	0	0	0.0026034	1	5082	5082		150.36	54.546	1				36949	7305	25281	25370	37407	37407					0.024723277206135208
SLGGKAQVVL	10	Unmodified	_SLGGKAQVVL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7895812988281	2	486.297842	970.581131	2.5203	0.0012256	-3.7744	-0.0018355	-1.2541	-0.00060987	486.29657246469253	37.635	0.35218	37.635	37.484	37.837	0					14	7	3	0	0	0	0.55603	1	14698	14698		39.253	2.0937	1	977590	+		36950	13022	25282	25371	37408	37408					0.09466333339935318
SLGGKVEL	8	Unmodified	_SLGGKVEL_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.73681640625	2	401.737086	801.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.902	1	27.902	27.402	28.402	0								0	0	0	1.7419	1	10162	10162		42.474	3.6683	1		+		36951	21173	25283	25372	37409	37409					0.050947109774256205
SLGGNRRQGG	10	Unmodified	_SLGGNRRQGG_					0	0	0			REV__ENST00000358912.4_1_2:64335509-64371369:-|nuORF	REV__ENST00000358912.4_1_2:64335509-64371369:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2666931152344	2	501.265396	1000.51624	0.9368	0.00046958	1.4831	0.00074345	2.4199	0.001213	501.2662852700726	31.71	0.34713	31.71	31.513	31.861	0					10	7	2	0	0	0	0.27065	1	11998	11998		70.816	7.2824	1	500430	+		36952	18543	25284	25373	37410	37410					0.016001515866605587
SLGGYPLAV	9	Unmodified	_SLGGYPLAV_					0	0	0		nc|ENSG00000111405|P21128-3|ENDOU;nc|ENSG00000111405|P21128-2|ENDOU;ENSG00000111405|ENST00000422538|ENDOU	nc|ENSG00000111405|P21128-3|ENDOU	nc|ENSG00000111405|P21128-3|ENDOU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7434997558594	2	438.744911	875.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.726	1	14.726	14.226	15.226	0								0	0	0	0.25856	1	3651	3651		42.474	7.2737	1				36953	2666	25285	25374	37411	37411					0.032549974944686255
SLGIEVLSKQG	11	Unmodified	_SLGIEVLSKQG_					0	0	0		nc|ENSG00000131067|Q9UJ14-4|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7;GGT7|p.Q511Lfs*16|1|0.11|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAA|frameshift_variant;ENSG00000131067|ENST00000336431|GGT7	nc|ENSG00000131067|Q9UJ14-4|GGT7	nc|ENSG00000131067|Q9UJ14-4|GGT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.8255615234375	2	565.824421	1129.63429	1.4495	0.00082015	-0.51323	-0.0002904	0.93625	0.00052975	565.823718644317	26.344	0.117	26.344	26.254	26.371	0					5	3	2	0	0	0	0.44591	1	7999	7999		46.457	0	1	28574			36954	3698	25286	25375	37412	37412					0.07465666331927423
SLGLKWLF	8	Unmodified	_SLGLKWLF_					0	0	0		ENST00000465933.1_1_3:57678941-57679028:+|nuORF	ENST00000465933.1_1_3:57678941-57679028:+|nuORF	ENST00000465933.1_1_3:57678941-57679028:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.284912109375	2	482.286746	962.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.409	1	34.409	33.909	34.909	0								0	0	0	1.7419	1	13261	13261		57.811	3.035	1				36955	9781	25287	25376	37413	37413					0.07616153662172565
SLGLMSTLSQ	10	Unmodified	_SLGLMSTLSQ_					0	0	0		SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant;nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP	SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant	SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7705688476562	2	518.7708	1035.52705	1.4132	0.00073315	-0.024673	-1.28E-05	1.3886	0.00072035	519.2721570627353	24.909	0.07272	24.909	24.858	24.931	0					4	2	2	0	0	0	0.63224	1	7424	7424		30.318	1.1477	1	41252			36956	5061	25288	25377	37414	37414					0.010703731260718996
SLGLQPWIG	9	Unmodified	_SLGLQPWIG_					0	0	0		nc|ENSG00000153487|Q9UK53|ING1	nc|ENSG00000153487|Q9UK53|ING1	nc|ENSG00000153487|Q9UK53|ING1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.273193359375	2	485.77146	969.528367	0.64874	0.00031514	-2.0615	-0.0010014	-1.4128	-0.0006863	485.7690422108915	34.083	0.70546	34.083	33.799	34.504	0					36	17	3	0	0	0	0.30268	1	13184	13184		50.025	2.1089	1	586170			36957	11589	25289	25378	37415	37415					0.0423837527713431
SLGLSEQKA	9	Unmodified	_SLGLSEQKA_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;ENST00000482438.2_1_3:49141637-49142166:-|nuORF;nc|ENSG00000172053|P47897-2|QARS1	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7565002441406	2	466.756007	931.497461	-0.95565	-0.00044606	3.7304	0.0017412	2.7748	0.0012951	466.75744799932374	27.077	0.091181	27.077	27.017	27.108	0					5	3	2	0	0	0	0.42902	1	8597	8597		39.253	0.44669	1	44133			36958	6343	25290	25379	37416	37416					0.02897177172235388
SLGLSRPLSV	10	Unmodified	_SLGLSRPLSV_					0	0	0		ENST00000259371.6_1_9:124546048-124546174:+|nuORF	ENST00000259371.6_1_9:124546048-124546174:+|nuORF	ENST00000259371.6_1_9:124546048-124546174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.80810546875	2	514.808574	1027.60259	0.65638	0.00033791	-0.60752	-0.00031276	0.048854	2.5151E-05	514.8080342428035	26.344	0.14986	26.344	26.289	26.439	0					5	3	2	0	0	0	0.57126	1	8478	8478		40.058	26.604	1	132890			36959	8284	25291	25380	37417	37417					0.08989718368638933
SLGPATQVVPI	11	Unmodified	_SLGPATQVVPI_					0	0	0		PEX14|p.V89I|1|0.09|ENSG00000142655|chr1:10599333-10599333|G/A|missense_variant	PEX14|p.V89I|1|0.09|ENSG00000142655|chr1:10599333-10599333|G/A|missense_variant	PEX14|p.V89I|1|0.09|ENSG00000142655|chr1:10599333-10599333|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.818603515625	2	541.316232	1080.61791	1.0465	0.00056649	-1.0113	-0.00054741	0.03524	1.9076E-05	541.3155106707845	37.179	0.2833	37.179	37.063	37.346	0					24	15	2	0	0	0	0.64626	1	12157	12157		32.751	0	1	96652			36960	11923	25292	25381	37418	37418					0.08082585165857381
SLGPDPRV	8	Unmodified	_SLGPDPRV_					0	0	0			REV__ENST00000573062.5_1_17:2265030-2266200:+|nuORF	REV__ENST00000573062.5_1_17:2265030-2266200:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.73223876953125	2	420.732335	839.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.437	1	16.437	15.937	16.937	0								0	0	0	1.7419	1	4550	4550		45.952	1.4209	1		+		36961	20394	25293	25382	37419	37419					0.02396942691905224
SLGPEPLPIP	10	Unmodified	_SLGPEPLPIP_					0	0	0		CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant;CNKSR1|p.P512Hfs*58|2|0.35|ENSG00000142675|chr1:26188287-26188287|C/-|frameshift_variant;CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1	CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.29217529296875	2	510.292225	1018.5699	1.0534	0.00053752	-1.1829	-0.00060365	-0.12959	-6.6128E-05	510.2913443730989	33.407	0.45069	33.407	33.313	33.763	0					22	16	2	0	0	0	0.37692	1	10846	10846		58.782	5.4305	1	235510			36962	570	25294	25383	37420	37420					0.061355112458159056
SLGPGARAAY	10	Unmodified	_SLGPGARAAY_					0	0	0		ENST00000284878.11_1_21:18885283-18885484:+|nuORF	ENST00000284878.11_1_21:18885283-18885484:+|nuORF	ENST00000284878.11_1_21:18885283-18885484:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7560729980469	2	481.756341	961.498129	0.38793	0.00018689	-1.2834	-0.00061829	-0.89548	-0.0004314	481.75572886003965	17.164	0.14136	17.164	17.071	17.213	0					5	3	2	0	0	0	0.55603	1	4803	4803		39.253	0	1	140900			36963	8424	25295	25384	37421	37421					0.015840166119346577
SLGPLPTNAGP	11	Unmodified	_SLGPLPTNAGP_					0	0	0			REV__PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant	REV__PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2772827148438	2	512.277106	1022.53966	0.49298	0.00025254	-0.26344	-0.00013495	0.22954	0.00011759	512.2769410848557	24.469	0.118	24.469	24.41	24.528	0					4	2	2	0	0	0	0.53842	1	8582	8582		41.427	2.1738	1	82433	+		36964	21360	25296	25385	37422	37422					0.029291525806002028
SLGQLSSSRA	10	Unmodified	_SLGQLSSSRA_					0	0	0		ENSG00000146410|ENST00000420702|MTFR2	ENSG00000146410|ENST00000420702|MTFR2	ENSG00000146410|ENST00000420702|MTFR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2716369628906	2	503.269813	1004.52507	1.0034	0.00050496	2.0924	0.001053	3.0957	0.001558	503.2705750540051	30.119	0.56388	30.119	29.9	30.464	0					28	11	4	0	0	0	0.065778	1	11204	11204		104.01	2.761	1	2785600			36965	4730	25297	25386	37423	37423					0.022990804324763303
SLGQLSSSRA	10	Unmodified	_SLGQLSSSRA_					0	0	0		ENSG00000146410|ENST00000420702|MTFR2	ENSG00000146410|ENST00000420702|MTFR2	ENSG00000146410|ENST00000420702|MTFR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.27203369140625	2	503.269813	1004.52507	-0.44958	-0.00022626	3.4915	0.0017572	3.0419	0.0015309	503.27183924951737	30.009	0.31765	30.009	29.896	30.214	0					19	6	4	0	0	0	0.12383	1	11048	11048		91.265	3.5688	1	537230			36966	4730	25297	25386	37424	37424					0.022990804324763303
SLGRTLSLH	9	Unmodified	_SLGRTLSLH_					0	0	0			REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	328.52587890625	3	328.525936	982.555979	0.28667	9.4178E-05	-0.37863	-0.00012439	-0.091956	-3.021E-05	328.5258199014586	15.24	0.14602	15.24	15.161	15.307	0					7	4	2	0	0	0	0.46194	1	3267	3267		36.447	2.2742	1	1361300	+		36967	16958	25298	25387	37425	37425					0.06400278537375925
SLGSGLRRGR	10	Unmodified	_SLGSGLRRGR_					0	0	0			REV__ENST00000592495.1_1_19:11959591-11959708:+|nuORF	REV__ENST00000592495.1_1_19:11959591-11959708:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.544921875	3	353.544101	1057.61047	1.4441	0.00051057	1.0208	0.00036088	2.4649	0.00087145	353.5444468511027	25.644	0.21927	25.644	25.535	25.755	0					9	4	3	0	0	0	0.54197	1	9143	9143		37.508	7.9574	1	692420	+		36968	20538	25299	25388	37426	37426					0.08397290408788649
SLGSIKEQV	9	Unmodified	_SLGSIKEQV_					0	0	0			REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7713928222656	2	480.771657	959.528761	0.51451	0.00024736	-0.97023	-0.00046646	-0.45572	-0.0002191	480.77115475500415	18.041	0.19973	18.041	17.942	18.142	0					7	4	2	0	0	0	0.1424	1	5217	5217		69.628	0	1	892850	+		36969	15869	25300	25389	37427	37427					0.047377502063341126
SLGSTKRSRS	10	Unmodified	_SLGSTKRSRS_					0	0	0			REV__ENST00000481434.5_1_7:151372433-151573717:-|nuORF	REV__ENST00000481434.5_1_7:151372433-151573717:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.2058410644531	3	360.203633	1077.58907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.875	1	45.875	45.375	46.375	0								0	0	0	0.4201	1	18379	18379		14.086	0	1		+		36970	13830	25301	25390	37428	37428					0.053378605894295106
SLGVSLGVAAV	11	Unmodified	_SLGVSLGVAAV_					0	0	0			REV__ENSG00000261272|ENST00000561890|MUC22	REV__ENSG00000261272|ENST00000561890|MUC22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7893371582031	2	486.78985	971.565146	-0.044814	-2.1815E-05	-0.83384	-0.0004059	-0.87865	-0.00042772	486.7895366276445	19.445	0.072189	19.445	19.402	19.474	0					4	2	2	0	0	0	0.37008	1	5037	5037		54.776	13.35	1	44047	+		36971	17779	25302	25391	37429	37429					0.07822627103053037
SLGVVPGSL	9	Unmodified	_SLGVVPGSL_					0	0	0			REV__HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant	REV__HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.7484436035156	2	414.744911	827.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.63	1	35.63	35.13	36.13	0								0	0	0	0.19749	1	13376	13376		51.335	0	1		+		36972	15555	25303	25392	37430	37430					0.05462997494487354
SLHAGLHRHI	10	Unmodified	_SLHAGLHRHI_					0	0	0			REV__ENST00000473633.1_1_7:150838782-150841027:+|nuORF	REV__ENST00000473633.1_1_7:150838782-150841027:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.823486328125	2	570.822881	1139.63121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.136	1	16.136	15.636	16.636	0								0	0	0	0.40862	1	3760	3760		27.882	4.3595	1		+		36973	14712	25304	25393	37431	37431					0.06697880788487964
SLHCAQIQVKL	11	Unmodified	_SLHCAQIQVKL_					0	0	0		DGKE|p.F486L|1|0.34|ENSG00000153933|chr17:56862185-56862185|C/A|missense_variant	DGKE|p.F486L|1|0.34|ENSG00000153933|chr17:56862185-56862185|C/A|missense_variant	DGKE|p.F486L|1|0.34|ENSG00000153933|chr17:56862185-56862185|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.900634765625	3	413.900786	1238.68053	0.061881	2.5613E-05	-0.4697	-0.00019441	-0.40782	-0.0001688	413.90059912157	31.1	0.20471	31.1	30.997	31.202	0					7	4	2	0	0	0	0.73562	1	11707	11707		24.232	1.6522	1	257900			36974	776	25305	25394	37432	37432					0.07073407962388956
SLHDTVFDKI	10	Unmodified	_SLHDTVFDKI_					0	0	0		nc|ENSG00000140798|Q96J65-2|ABCC12;ABCC12|p.M936Yfs*84|1|0.32|ENSG00000140798|chr16:48104236-48104237|-/A|frameshift_variant;ABCC12|p.R1075Cfs*54|1|0.38|ENSG00000140798|chr16:48091182-48091183|-/CA|frameshift_variant;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12	nc|ENSG00000140798|Q96J65-2|ABCC12	nc|ENSG00000140798|Q96J65-2|ABCC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	392.20819091796875	3	392.208273	1173.60299	0.88313	0.00034637	-0.82522	-0.00032366	0.057915	2.2715E-05	392.20795171251285	27.887	0.62619	27.887	27.792	28.419	0					25	15	3	0	0	0	0.60076	1	9805	9805		25.126	0	1	1391300			36975	15	25306	25395	37433	37433					0.023130932978574492
SLHLHPEL	8	Unmodified	_SLHLHPEL_					0	0	0		nc|ENSG00000176840|Q8N6C7|MIR7-3HG	nc|ENSG00000176840|Q8N6C7|MIR7-3HG	nc|ENSG00000176840|Q8N6C7|MIR7-3HG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2607421875	2	473.261259	944.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.57	1	31.57	31.07	32.07	0								0	0	0	1.7419	1	10155	10155		31.955	0	1				36976	11658	25307	25396	37434	37434					0.033492046173250856
SLHPQEVDSV	10	Unmodified	_SLHPQEVDSV_					0	0	0		CLEC4F|p.A26V|1|0.45|ENSG00000152672|chr2:70819876-70819876|G/A|missense_variant;nc|ENSG00000152672|Q8N1N0-2|CLEC4F;ENSG00000152672|ENST00000272367|CLEC4F	CLEC4F|p.A26V|1|0.45|ENSG00000152672|chr2:70819876-70819876|G/A|missense_variant	CLEC4F|p.A26V|1|0.45|ENSG00000152672|chr2:70819876-70819876|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.775146484375	2	555.774928	1109.5353	-0.098225	-5.4591E-05	-0.4852	-0.00026966	-0.58343	-0.00032425	555.7745847568002	30.488	0.29638	30.488	30.384	30.68	0					14	6	3	0	0	0	0.44601	1	11438	11438		51.193	1.6567	1	244010			36977	553	25308	25397	37435	37435					-0.015083566329622045
SLHPQVTH	8	Unmodified	_SLHPQVTH_					0	0	0		RAPGEF2|p.H487Tfs*21|1|0.06|ENSG00000109756|chr4:159332499-159332499|C/-|frameshift_variant;RAPGEF2|p.S522Vfs*12|5|0.29|ENSG00000109756|chr4:159332603-159332603|A/-|frameshift_variant;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	RAPGEF2|p.H487Tfs*21|1|0.06|ENSG00000109756|chr4:159332499-159332499|C/-|frameshift_variant	RAPGEF2|p.H487Tfs*21|1|0.06|ENSG00000109756|chr4:159332499-159332499|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.742919921875	2	459.743234	917.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.61	1	13.61	13.11	14.11	0								0	0	0	1.7419	1	3134	3134		44.117	1.6423	1				36978	2589	25309	25398	37436	37436					0.0098774744047887
SLHPWYGIT	9	Unmodified	_SLHPWYGIT_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8492431640625	3	358.51867	1072.53418	0.72253	0.00025904	3.477	0.0012466	4.1996	0.0015056	358.52009154822844	13.669	0.33785	13.669	13.417	13.755	0					11	9	2	0	0	0	0.50858	1	3120	3120		31.53	9.5699	1	76458			36979	1977	25310	25399	37437	37437					0.0008147378880494216
SLHRSSGRK	9	Unmodified	_SLHRSSGRK_					0	0	0			REV__ENSG00000168830|ENST00000305344|HTR1E	REV__ENSG00000168830|ENST00000305344|HTR1E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.1978454589844	3	343.196701	1026.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.98	1	36.98	36.48	37.48	0								0	0	0	0.37233	1	13242	13242		19.104	3.0967	1		+		36980	16282	25311	25400	37438	37438					0.0560531500043453
SLHSLLWEA	9	Unmodified	_SLHSLLWEA_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant;DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2803344726562	2	528.279649	1054.54475	0.10806	5.7087E-05	1.7114	0.00090412	1.8195	0.00096121	528.7820641016617	11.517	0.085178	11.517	11.463	11.549	0					5	3	2	0	0	0	0.61124	1	2243	2243		11.511	0	1	54916			36981	4116	25312	25401	37439	37439					0.0196545644323578
SLHSSTLLL	9	Unmodified	_SLHSSTLLL_					0	0	0		ENST00000379066.5_1_2:37479395-37479560:-|nuORF	ENST00000379066.5_1_2:37479395-37479560:-|nuORF	ENST00000379066.5_1_2:37479395-37479560:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7810363769531	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.745	1	45.745	45.245	46.245	0								0	0	0	0.28996	1	18328	18328		37.159	0	1				36982	9075	25313	25402	37440	37440					0.06350340586004677
SLIAHSLSF	9	Unmodified	_SLIAHSLSF_					0	0	0			REV__ENST00000372406.5_1_9:132898816-132898981:+|nuORF	REV__ENST00000372406.5_1_9:132898816-132898981:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7684631347656	2	487.768917	973.523281	-0.35817	-0.00017471	-0.22052	-0.00010756	-0.57869	-0.00028227	487.7689906323617	38.33	0.23532	38.33	38.229	38.465	0					14	8	2	0	0	0	0.33044	1	14538	14538		31.955	0	1	173530	+		36983	18668	25314	25403	37441	37441					0.03546071414518792
SLIAMLVVVM	10	Oxidation (M)	_SLIAM(Oxidation (M))LVVVM_		SLIAM(0.974)LVVVM(0.026)		SLIAM(16)LVVVM(-16)	0	0	1			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.5452880859375	3	364.544951	1090.61302	0.27979	0.000102	-0.23804	-8.6775E-05	0.041752	1.5221E-05	364.5448922300661	31.004	1.1067	31.004	30.909	32.015	0					68	24	6	0	0	0	0.49411	1	11802	11802		45.972	8.1607	2	24969000	+		36984	15276	25315	25404	37442	37442		587			0.07134241707240108
SLIDTNDHGLL	11	Unmodified	_SLIDTNDHGLL_					0	0	0			REV__ENST00000373473.5_1_20:36374873-36393614:+|nuORF	REV__ENST00000373473.5_1_20:36374873-36393614:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	399.876220703125	3	399.875182	1196.60372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.128	1	16.128	15.628	16.628	0								0	0	0	0.45344	1	3808	3808		25.126	4.1791	1		+		36985	18684	25316	25405	37443	37443					0.013278879468998639
SLIEETPR	8	Unmodified	_SLIEETPR_					0	0	0		ENST00000358825.9_1_11:129787049-129788476:-|nuORF	ENST00000358825.9_1_11:129787049-129788476:-|nuORF	ENST00000358825.9_1_11:129787049-129788476:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7560119628906	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.931	1	24.931	24.431	25.431	0								0	0	0	1.7419	1	7692	7692		56.721	1.9447	1				36986	8841	25317	25406	37444	37444					0.023451771722307058
SLIEFLKQK	9	Unmodified	_SLIEFLKQK_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1;ENST00000454337.1_1_16:1697048-1706838:+|nuORF	ENSG00000007545|ENST00000397412|CRAMP1;ENST00000454337.1_1_16:1697048-1706838:+|nuORF	ENST00000454337.1_1_16:1697048-1706838:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3350830078125	2	553.334424	1104.6543	1.8208	0.0010075	-0.84756	-0.00046898	0.97322	0.00053851	553.3337748227406	31.903	0.24866	31.903	31.822	32.07	0					14	6	3	0	0	0	0.24095	1	11672	11672		56.721	1.6371	1	300780			36987	1008;9674	25318	25407	37445	37445					0.10615462062582992
SLIEQTTAL	9	Unmodified	_SLIEQTTAL_					0	0	0		ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2	ENST00000395941.4_1_12:27107091-27110700:+|nuORF	ENST00000395941.4_1_12:27107091-27110700:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2713928222656	2	488.27149	974.528426	0.79549	0.00038841	-1.4354	-0.00070089	-0.63996	-0.00031248	488.2709065860877	43.929	0.20047	43.929	43.837	44.037	0					11	7	2	0	0	0	0.10915	1	17596	17596		77.318	27.782	1	154830			36988	2698	25319	25408	37446	37446					0.040143304864727725
SLIFRPQKV	9	Unmodified	_SLIFRPQKV_					0	0	0		ENST00000444517.5_1_21:34958357-34959841:-|nuORF;ENST00000437395.5_1_21:34958360-34960769:-|nuORF	ENST00000444517.5_1_21:34958357-34959841:-|nuORF	ENST00000444517.5_1_21:34958357-34959841:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.892578125	3	363.225598	1086.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.682	1	14.682	14.182	15.182	0								0	0	0	0.31838	1	3708	3708		31.53	1.2121	1				36989	9540	25320	25409	37447	37447					0.11510301502289622
SLIGGPGSHIG	11	Unmodified	_SLIGGPGSHIG_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.1819763183594	3	332.182058	993.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.055	1	19.055	18.555	19.555	0								0	0	0	0.44116	1	5957	5957		24.232	4.235	1				36990	7400	25321	25410	37448	37448					0.027322857834406022
SLIGVPVGL	9	Unmodified	_SLIGVPVGL_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.77069091796875	2	427.770929	853.527304	0.93151	0.00039847	-1.1878	-0.00050811	-0.25629	-0.00010963	427.77031438562466	37.721	0.25905	37.721	37.62	37.88	0					12	8	2	0	0	0	0.14734	1	14777	14777		68.485	24.368	1	65474	+		36991	17133	25322	25411	37449	37449					0.09468160908227219
SLIKIRRLFH	10	Unmodified	_SLIKIRRLFH_					0	0	0		nc|ENSG00000163645|Q7L0X2-3|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;ENSG00000163645|ENST00000295910|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.2737731933594	3	428.275063	1281.80336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.57	1	18.57	18.07	19.07	0								0	0	0	0.4201	1	4872	4872		7.8045	1.4836	1				36992	5587	25323	25412	37450	37450					0.17373032475961736
SLIKLHASK	9	Unmodified	_SLIKLHASK_					0	0	0			REV__ENST00000341060.3_1_6:24658840-24658948:-|nuORF	REV__ENST00000341060.3_1_6:24658840-24658948:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.813232421875	2	498.813659	995.612765	0.68357	0.00034097	-1.4292	-0.00071293	-0.74568	-0.00037195	498.8129845966381	21.701	0.18208	21.701	21.61	21.792	0					7	4	2	0	0	0	0.38666	1	6951	6951		42.864	0	1	321100	+		36993	18448	25324	25413	37451	37451					0.114783260938907
SLILGTRE	8	Unmodified	_SLILGTRE_					0	0	0		tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.7607116699219	2	444.761092	887.507631	3.2408	0.0014414	-3.5192	-0.0015652	-0.27841	-0.00012383	444.7595913781299	19.985	0.10436	19.985	19.917	20.021	0					5	3	2	0	0	0	0.5676	1	5518	5518		53.351	0	1	46797			36994	22612	25325	25414	37452	37452					0.059377848974691005
SLILLYFLFI	10	Unmodified	_SLILLYFLFI_					0	0	0		tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.5905456542969	3	414.589654	1240.74713	1.0016	0.00041524	1.0842	0.00044949	2.0858	0.00086473	414.5901356023516	34.53	0.25852	34.53	34.426	34.684	0					15	5	4	0	0	0	0.64162	1	13254	13254		29.17	2.4204	1	1005500			36995	23037	25326	25415	37453	37453					0.13638966795929264
SLILTLYNDM	10	Unmodified	_SLILTLYNDM_					0	0	0			REV__RICTOR|p.A393T|1|0.34|ENSG00000164327|chr5:38967202-38967202|C/T|missense_variant	REV__RICTOR|p.A393T|1|0.34|ENSG00000164327|chr5:38967202-38967202|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.874755859375	3	394.874014	1181.60021	-0.65246	-0.00025764	3.0898	0.0012201	2.4373	0.00096242	394.8749012229065	23.746	1.0107	23.746	23.585	24.595	0					44	20	4	0	0	0	0.5155	1	8102	8102		43.651	8.4726	1	2209200	+		36996	21465	25327	25416	37454	37454					0.01667501848669417
SLILYATETL	10	Unmodified	_SLILYATETL_					0	0	0		sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.3170776367188	2	562.315897	1122.61724	1.7865	0.0010046	0.147	8.2663E-05	1.9335	0.0010872	562.3159704990846	29.837	0.5233	29.837	29.655	30.178	0					37	13	4	0	0	0	0.66185	1	10684	10684		26.693	0	1	477880			36997	22464	25328	25417	37455	37455					0.060837457261413874
SLIMGSMTLQ	10	Unmodified	_SLIMGSMTLQ_					0	0	0		ENST00000295049.8_1_2:198540403-198540484:-|nuORF	ENST00000295049.8_1_2:198540403-198540484:-|nuORF	ENST00000295049.8_1_2:198540403-198540484:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7755737304688	2	540.775028	1079.5355	0.27944	0.00015111	0.29961	0.00016202	0.57905	0.00031314	540.7752683159002	28.287	0.25163	28.287	28.195	28.447	0					15	6	3	0	0	0	0.55603	1	9986	9986		39.253	2.0937	1	545460			36998	8447	25329	25418	37456	37456					-0.001083962289385454
SLIPYMLLV	9	Unmodified	_SLIPYMLLV_					0	0	0			REV__nc|ENSG00000094841|Q96BW1-3|UPRT	REV__nc|ENSG00000094841|Q96BW1-3|UPRT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.2095947265625	3	350.208556	1047.60384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.063	1	30.063	29.563	30.563	0								0	0	0	0.3428	1	10191	10191		26.693	5.0072	1		+		36999	13463	25330	25419	37457	37457					0.08194216413198774
SLISINNKLQ	10	Unmodified	_SLISINNKLQ_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.5540771484375	3	377.224034	1128.65027	-1.0915	-0.00041174	-1.3991	-0.00052777	-2.4906	-0.00093951	377.2233282161722	18.799	0.24734	18.799	18.588	18.835	0					11	8	2	0	0	0	0.70274	1	4946	4946		21.686	0	1	360450			37000	7609	25331	25420	37458	37458					0.09109372568855179
SLISTNVAL	9	Unmodified	_SLISTNVAL_					0	0	0			REV__ENSG00000212864|ENST00000391553|RNF208	REV__ENSG00000212864|ENST00000391553|RNF208	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7664489746094	2	459.26875	916.522947	0.15917	7.31E-05	-2.0578	-0.00094506	-1.8986	-0.00087196	459.2683099079906	24.332	0.33371	24.332	24.144	24.478	0					26	7	5	0	0	0	0.39215	1	8121	8121		42.396	0.96952	1	5327100	+		37001	17552	25332	25421	37459	37459					0.061346516946514384
SLISTNVAL	9	Unmodified	_SLISTNVAL_					0	0	0			REV__ENSG00000212864|ENST00000391553|RNF208	REV__ENSG00000212864|ENST00000391553|RNF208	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2662048339844	2	459.26875	916.522947	-0.15635	-7.1808E-05	-3.9487	-0.0018135	-4.105	-0.0018853	459.2670824694258	33.117	0.27193	33.117	32.974	33.246	0					9	6	2	0	0	0	0.13267	1	12637	12637		71.877	0	1	117380	+		37002	17552	25332	25421	37460	37460					0.061346516946514384
SLITELAPSLN	11	Unmodified	_SLITELAPSLN_					0	0	0			REV__ENST00000431802.5_1_2:219525993-219526154:+|nuORF	REV__ENST00000431802.5_1_2:219525993-219526154:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.5508728027344	3	386.551928	1156.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.293	1	14.293	13.793	14.793	0								0	0	0	0.43806	1	3522	3522		28.577	0.49524	1		+		37003	19171	25333	25422	37461	37461					0.06190246612095507
SLKAGGYPLV	10	Unmodified	_SLKAGGYPLV_					0	0	0		ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7936096191406	2	502.792392	1003.57023	0.7232	0.00036362	0.26297	0.00013222	0.98617	0.00049584	502.7925764582554	42.172	0.085247	42.172	42.105	42.191	0					7	4	2	0	0	0	0.64178	1	15986	15986		29.15	1.2673	1	51545			37004	6983	25334	25423	37462	37462					0.06858930965654508
SLKAGNAI	8	Unmodified	_SLKAGNAI_					0	0	0		tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.22943115234375	2	387.229428	772.444303	-0.020232	-7.8344E-06	-0.22573	-8.7411E-05	-0.24597	-9.5246E-05	387.2293379665575	30.127	0.44451	30.127	29.961	30.405	0					24	11	3	0	0	0	0.6282	1	10819	10819		44.531	9.3304	1	186870			37005	22906	25335	25424	37463	37463					0.04897844180220545
SLKAKARAPE	10	Unmodified	_SLKAKARAPE_					0	0	0			REV__ENST00000498090.1_1_2:100623057-100623988:-|nuORF	REV__ENST00000498090.1_1_2:100623057-100623988:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.548828125	3	357.548741	1069.62439	0.30419	0.00010876	-0.10677	-3.8176E-05	0.19742	7.0587E-05	357.5486196722648	16.038	0.16718	16.038	15.93	16.097	0					7	3	3	0	0	0	0.58189	1	4497	4497		41.08	16.012	1	258170	+		37006	12100	25336	25425	37464	37464					0.09236523117215256
SLKFSRLAR	9	Unmodified	_SLKFSRLAR_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.8890686035156	3	359.889097	1076.64546	-0.91972	-0.000331	0.63141	0.00022724	-0.28832	-0.00010376	359.889287420337	21.006	0.59365	21.006	20.927	21.52	0					45	18	4	0	0	0	0.60851	1	6159	6159		20.837	4.1198	1	4363200	+		37007	14120	25337	25426	37465	37465					0.11020533216742479
SLKFYKEL	8	Unmodified	_SLKFYKEL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF;ENST00000471355.5_1_2:219093513-219093687:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2933349609375	2	514.294768	1026.57498	0.079587	4.0931E-05	-3.5135	-0.001807	-3.4339	-0.0017661	514.2926061709576	28.151	0.13714	28.151	28.082	28.219	0					7	4	2	0	0	0	0.69548	1	8768	8768		17.365	0	1	49102			37008	5558	25338	25427	37466	37466					0.06275815108415372
SLKGEKRKN	9	Unmodified	_SLKGEKRKN_					0	0	0		ZGRF1|p.L1339R|1|0.34|ENSG00000138658|chr4:112585626-112585626|A/C|missense_variant	ZGRF1|p.L1339R|1|0.34|ENSG00000138658|chr4:112585626-112585626|A/C|missense_variant	ZGRF1|p.L1339R|1|0.34|ENSG00000138658|chr4:112585626-112585626|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.3167114257812	2	530.317097	1058.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.421	1	25.421	24.921	25.921	0								0	0	0	0.28666	1	7648	7648		37.812	3.639	1				37009	23141	25339	25428	37467	37467					0.09267638974461079
SLKGISSLY	9	Unmodified	_SLKGISSLY_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.2770690917969	2	484.276575	966.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.212	1	30.212	29.712	30.712	0								0	0	0	0.30504	1	9603	9603		34.173	1.3601	1		+		37010	12884	25340	25429	37468	37468					0.053989382117038076
SLKGISSLY	9	Unmodified	_SLKGISSLY_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2763671875	2	484.276575	966.538597	-0.26261	-0.00012718	-0.19059	-9.2301E-05	-0.4532	-0.00021948	484.27646457085825	30.282	0.16675	30.282	30.186	30.352	0					7	4	2	0	0	0	0.53083	1	10311	10311		29.15	2.3535	1	67248	+		37011	12884	25340	25429	37469	37469					0.053989382117038076
SLKGNELIV	9	Unmodified	_SLKGNELIV_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7891540527344	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.187	1	35.187	34.687	35.687	0								0	0	0	0.29774	1	11531	11531		35.618	1.4457	1		+		37012	15439	25341	25430	37470	37470					0.07822627103053037
SLKHSTTL	8	Unmodified	_SLKHSTTL_					0	0	0		ENST00000545522.2_1_19:19304755-19308134:+|nuORF;RFXANK|p.H151Pfs*30|1|0.26|ENSG00000064490|chr19:19198114-19198115|-/C|frameshift_variant;nc|ENSG00000064490|O14593-3|RFXANK;ENSG00000064490|ENST00000303088|RFXANK;ENST00000543157.7_1_19:19304755-19307890:+|nuORF;nc|ENSG00000064490|O14593-2|RFXANK;ENST00000541873.6_1_19:19304755-19309594:+|nuORF	ENST00000545522.2_1_19:19304755-19308134:+|nuORF	ENST00000545522.2_1_19:19304755-19308134:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7536315917969	2	443.753267	885.491981	-1.1592	-0.00051442	0.58437	0.00025932	-0.57487	-0.0002551	443.7535236635853	23.39	0.6131	23.39	23.246	23.86	0					41	21	2	0	0	0	0.65276	1	7150	7150		40.573	0	1	421240			37013	1349	25342	25431	37471	37471					0.04465498380432109
SLKIEERA	8	Unmodified	_SLKIEERA_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2720642089844	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.645	1	18.645	18.145	19.145	0								0	0	0	1.7419	1	5758	5758		69.628	0	1				37014	3289	25343	25432	37472	37472					0.05461169926184084
SLKIIFLVM	9	Unmodified	_SLKIIFLVM_					0	0	0		ENSG00000172215|ENST00000304552|CXCR6	ENSG00000172215|ENST00000304552|CXCR6	ENSG00000172215|ENST00000304552|CXCR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	355.22540283203125	3	355.224318	1062.65112	-0.87183	-0.00030969	4.346	0.0015438	3.4741	0.0012341	355.22580585646915	18.628	0.12665	18.628	18.559	18.686	0					6	4	2	0	0	0	0.60749	1	4908	4908		20.947	0	1	186110			37015	6352	25344	25433	37473	37473					0.12230495684184461
SLKIKLPKL	9	Unmodified	_SLKIKLPKL_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	347.2459716796875	3	347.24611	1038.7165	0.18536	6.4365E-05	-0.49333	-0.00017131	-0.30797	-0.00010694	347.2458412386094	21.986	0.33326	21.986	21.794	22.127	0					20	9	4	0	0	0	0.44593	1	6135	6135		37.812	3.639	1	716230	+		37016	14468	25345	25434	37474	37474					0.19869233201529823
SLKKKTMPA	9	Unmodified	_SLKKKTMPA_					0	0	0		BBS12|p.E561Kfs*77|1|0.35|ENSG00000181004|chr4:122743567-122743567|A/-|frameshift_variant	BBS12|p.E561Kfs*77|1|0.35|ENSG00000181004|chr4:122743567-122743567|A/-|frameshift_variant	BBS12|p.E561Kfs*77|1|0.35|ENSG00000181004|chr4:122743567-122743567|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.30194091796875	2	502.30207	1002.58959	-0.53149	-0.00026697	0.18154	9.1188E-05	-0.34995	-0.00017578	502.3022488507895	24.834	0.36037	24.834	24.729	25.089	0					12	7	3	0	0	0	0.57706	1	8752	8752		24.203	2.2429	1	349220			37017	281	25346	25435	37475	37475					0.08839563984918186
SLKKSHSTY	9	Unmodified	_SLKKSHSTY_					0	0	0		GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant;GPR158|p.K1143Rfs*23|1|0.32|ENSG00000151025|chr10:25599048-25599048|A/-|frameshift_variant;ENSG00000151025|ENST00000376351|GPR158;ENST00000490549.1_1_10:25883203-25888200:+|nuORF	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7830810546875	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.808	1	41.808	41.308	42.308	0								0	0	0	0.24724	1	16651	16651		44.117	4.864	1				37018	4943	25347	25436	37476	37476					0.027765549549030766
SLKKSHSTY	9	Unmodified	_SLKKSHSTY_					0	0	0		GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant;GPR158|p.K1143Rfs*23|1|0.32|ENSG00000151025|chr10:25599048-25599048|A/-|frameshift_variant;ENSG00000151025|ENST00000376351|GPR158;ENST00000490549.1_1_10:25883203-25888200:+|nuORF	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7814331054688	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.058	1	42.058	41.558	42.558	0								0	0	0	0.28666	1	16764	16764		37.812	2.6595	1				37019	4943	25347	25436	37477	37477					0.027765549549030766
SLKLILQR	8	Unmodified	_SLKLILQR_					0	0	0		ENSG00000140854|ENST00000379661|KATNB1	ENSG00000140854|ENST00000379661|KATNB1	ENSG00000140854|ENST00000379661|KATNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	324.21844482421875	3	324.218443	969.633501	-1.9074	-0.0006184	1.3911	0.00045103	-0.51623	-0.00016737	324.21912146724077	22.907	0.13987	22.907	22.812	22.952	0					8	3	3	0	0	0	0.65276	1	6913	6913		42.396	0	1	126140			37020	4411	25348	25437	37478	37478					0.14746916473563942
SLKLMGRVM	9	Oxidation (M)	_SLKLMGRVM(Oxidation (M))_		SLKLMGRVM(1)		SLKLM(-35)GRVM(35)	0	0	1		ENST00000381298.6_1_5:55233024-55233087:-|nuORF	ENST00000381298.6_1_5:55233024-55233087:-|nuORF	ENST00000381298.6_1_5:55233024-55233087:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7954711914062	2	525.793555	1049.57256	3.4527	0.0018154	-0.20115	-0.00010576	3.2516	0.0017097	525.7933557628577	36.752	0.31564	36.752	36.647	36.963	0					24	6	5	0	0	0	0.1424	1	14300	14300		69.628	69.628	2	7585300			37021	9111	25349	25438	37479	37479		364			0.04975320107450898
SLKLPGASM	9	Unmodified	_SLKLPGASM_					0	0	0			REV__ENST00000582363.1_1_18:5241075-5241255:+|nuORF	REV__ENST00000582363.1_1_18:5241075-5241255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2547302246094	2	452.252046	902.489538	-0.41133	-0.00018602	3.7841	0.0017113	3.3727	0.0015253	452.25333652282603	31.592	0.56524	31.592	31.37	31.935	0					24	11	3	0	0	0	0.14603	1	11809	11809		68.787	4.5796	1	238950	+		37022	20427	25350	25439	37480	37480					0.034393266511074216
SLKNHNLR	8	Unmodified	_SLKNHNLR_					0	0	0			REV__ENSG00000139330|ENST00000266719|KERA	REV__ENSG00000139330|ENST00000266719|KERA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.8577575683594	3	327.857797	980.551562	0.55067	0.00018054	-0.57097	-0.0001872	-0.020304	-6.6568E-06	327.8576380578623	14.918	1.7984	14.918	14.764	16.563	0					86	36	5	0	0	0	0.79882	1	4128	4128		29.15	7.1897	1	4784200	+		37023	15024	25351	25440	37481	37481					0.060508141144509864
SLKPHHFR	8	Unmodified	_SLKPHHFR_					0	0	0			REV__nc|ENSG00000188266|A2RU49-3|HYKK	REV__nc|ENSG00000188266|A2RU49-3|HYKK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	341.1942443847656	3	341.194521	1020.56173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.351	1	18.351	17.851	18.851	0								0	0	0	1.7419	1	4771	4771		34.173	5.0025	1		+		37024	17161	25352	25441	37482	37482					0.05227421839697399
SLKPLQSQL	9	Unmodified	_SLKPLQSQL_					0	0	0		CHIT1|p.A442Gfs*36|1|0.51|ENSG00000133063|chr1:203216965-203216965|G/-|frameshift_variant	CHIT1|p.A442Gfs*36|1|0.51|ENSG00000133063|chr1:203216965-203216965|G/-|frameshift_variant	CHIT1|p.A442Gfs*36|1|0.51|ENSG00000133063|chr1:203216965-203216965|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.3034362792969	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.405	1	21.405	20.905	21.905	0								0	0	0	0.03526	1	6199	6199		93.143	0	1				37025	511	25353	25442	37483	37483					0.08590315994376851
SLKPNLYL	8	Unmodified	_SLKPNLYL_					0	0	0			REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2816162109375	2	474.28166	946.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.985	1	44.985	44.485	45.485	0								0	0	0	1.7419	1	18022	18022		37.159	1.9584	1		+		37026	22154	25354	25443	37484	37484					0.07335545936939525
SLKQELSSA	9	Unmodified	_SLKQELSSA_					0	0	0			REV__MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant	REV__MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.76116943359375	2	481.761289	961.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.754	1	13.754	13.254	14.254	0								0	0	0	0.22075	1	3268	3268		47.96	1.9873	1		+		37027	13253	25355	25444	37485	37485					0.02573159826670235
SLKQFLQQ	8	Unmodified	_SLKQFLQQ_					0	0	0			REV__ENSG00000219481|ENST00000430580|NBPF1	REV__ENSG00000219481|ENST00000430580|NBPF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.28173828125	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.006	1	38.006	37.506	38.506	0								0	0	0	1.7419	1	12415	12415		66.429	0	1		+		37028	17607	25356	25445	37486	37486					0.054177603058633395
SLKQLLFPA	9	Unmodified	_SLKQLLFPA_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;ARHGEF1|p.G859Afs*4|1|0.32|ENSG00000076928|chr19:41906537-41906537|G/-|frameshift_variant	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.54156494140625	3	339.542816	1015.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.117	1	14.117	13.617	14.617	0								0	0	0	0.35899	1	3592	3592		23.523	0	1				37029	1570	25357	25446	37487	37487					0.09943807862362064
SLKRPRGRK	9	Unmodified	_SLKRPRGRK_					0	0	0			REV__ELF3|p.L306Cfs*19|1|0.41|ENSG00000163435|chr1:202013938-202013938|C/-|frameshift_variant	REV__ELF3|p.L306Cfs*19|1|0.41|ENSG00000163435|chr1:202013938-202013938|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.57275390625	3	366.571991	1096.69414	1.1772	0.00043152	1.3243	0.00048546	2.5015	0.00091698	366.57237007309783	14.688	0.16752	14.688	14.63	14.797	0					7	3	3	0	0	0	0.48623	1	3880	3880		33.922	1.1711	1	394370	+		37030	12789	25358	25447	37488	37488					0.14966446576499948
SLKRRQKT	8	Unmodified	_SLKRRQKT_					0	0	0		nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3;PEG3|p.T824Nfs*10|1|0.16|ENSG00000198300|chr19:56815956-56815971|TCCCTTCCTTCAGAGG/-|frameshift_variant	nc|ENSG00000198300|Q9GZU2-2|PEG3	nc|ENSG00000198300|Q9GZU2-2|PEG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.54974365234375	3	339.548964	1015.62506	1.5735	0.00053429	0.71378	0.00024236	2.2873	0.00077665	339.54917654825067	27.704	0.21934	27.704	27.594	27.813	0					14	4	4	0	0	0	0.68432	1	9956	9956		35.618	1.4457	1	1206900			37031	7547	25359	25448	37489	37489					0.11787362556935932
SLKRSSPRT	9	Unmodified	_SLKRSSPRT_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.3020629882812	2	516.301447	1030.58834	0.86379	0.00044597	0.08643	4.4624E-05	0.95022	0.0004906	516.3015823543153	11.561	0.084457	11.561	11.517	11.601	0					4	2	2	0	0	0	0.61124	1	2405	2405		14.137	0.36179	1	67245			37032	5300	25360	25449	37490	37490					0.07427065940373723
SLKSLGFKQ	9	Unmodified	_SLKSLGFKQ_					0	0	0		WDR11|p.N1189S|1|0.06|ENSG00000120008|chr10:120908604-120908604|A/G|missense_variant	WDR11|p.N1189S|1|0.06|ENSG00000120008|chr10:120908604-120908604|A/G|missense_variant	WDR11|p.N1189S|1|0.06|ENSG00000120008|chr10:120908604-120908604|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2633056640625	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.211	1	48.211	47.711	48.711	0								0	0	0	0.17378	1	18292	18292		54.776	7.119	1				37033	23111	25361	25450	37491	37491					0.07810333339944009
SLKTAGKSEP	10	Unmodified	_SLKTAGKSEP_					0	0	0		nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-2|MYO9A	nc|ENSG00000066933|B2RTY4-2|MYO9A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2830810546875	2	509.282389	1016.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.741	1	15.741	15.241	16.241	0								0	0	0	0.37293	1	3645	3645		38.754	0.94209	1				37034	1398	25362	25451	37492	37492					0.04261135235049096
SLKTKLLVS	9	Unmodified	_SLKTKLLVS_					0	0	0		ENSG00000166743|ENST00000520010|ACSM1;nc|ENSG00000166743|Q08AH1-2|ACSM1	ENSG00000166743|ENST00000520010|ACSM1	ENSG00000166743|ENST00000520010|ACSM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.21820068359375	3	330.21822	987.632832	0.27833	9.1908E-05	-0.15155	-5.0046E-05	0.12677	4.1862E-05	330.2180977140951	25.341	0.10081	25.341	25.292	25.393	0					5	3	2	0	0	0	0.5741	1	7618	7618		24.519	6.2571	1	65811			37035	5923	25363	25452	37493	37493					0.13852077033857313
SLKTVQGKK	9	Unmodified	_SLKTVQGKK_					0	0	0		nc|ENSG00000215859|A8MUH7-2|PDZK1P1;ENST00000401008.6_1_1:147468098-147482410:-|nuORF;nc|ENSG00000215859|A8MUH7|PDZK1P1;ENST00000425209.1_1_1:147466535-147481815:-|nuORF;ENSG00000174827|ENST00000417171|PDZK1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.8138122558594	2	494.811116	987.60768	2.8166	0.0013937	0.91394	0.00045223	3.7305	0.0018459	494.8115043414556	47.353	0.21651	47.353	47.283	47.5	0					17	12	2	0	0	0	0.55379	1	18912	18912		26.693	2.4902	1	67941			37036	6514	25364	25453	37494	37494					0.11338022231279865
SLKVCYLQSI	10	Unmodified	_SLKVCYLQSI_					0	0	0		ENST00000389793.6_1_1:235825353-235825464:-|nuORF	ENST00000389793.6_1_1:235825353-235825464:-|nuORF	ENST00000389793.6_1_1:235825353-235825464:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.320068359375	2	577.317917	1152.62128	1.4842	0.00085683	2.529	0.00146	4.0131	0.0023168	577.3190455845805	25.711	0.14084	25.711	25.615	25.756	0					7	4	2	0	0	0	0.65408	1	7761	7761		16.717	0	1	78173			37037	9136	25365	25454	37495	37495					0.05107511948222054
SLKYLEEG	8	Unmodified	_SLKYLEEG_					0	0	0			REV__TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant	REV__TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7445068359375	2	469.745108	937.475663	-1.2213	-0.0005737	0.7199	0.00033817	-0.5014	-0.00023553	469.74525165389554	36.049	0.21907	36.049	35.944	36.163	0					12	9	2	0	0	0	0.67394	1	12200	12200		37.159	1.5408	1	135320	+		37038	16222	25366	25455	37496	37496					0.00442372423674442
SLKYSACAVI	10	Unmodified	_SLKYSACAVI_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7825317382812	2	527.78371	1053.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.053	1	41.053	40.553	41.553	0								0	0	0	0.28607	1	16143	16143		25.574	0	1		+	+	37039	12603	25367	25456	37497	37497					0.028232673683532994
SLLAIVSQM	9	Unmodified	_SLLAIVSQM_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7731628417969	2	481.272978	960.531403	0.68665	0.00033047	0.28614	0.00013771	0.97279	0.00046818	481.2723380661591	39.967	0.14045	39.967	39.886	40.026	0					15	5	4	0	0	0	0.17854	1	15730	15730		64.207	0	1	207470	+		37040	16235	25368	25457	37498	37498					0.04955882339629625
SLLAIVSQM	9	Unmodified	_SLLAIVSQM_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.272705078125	2	481.272978	960.531403	0.91085	0.00043837	0.24763	0.00011918	1.1585	0.00055755	481.2722257646082	39.917	0.19272	39.917	39.825	40.017	0					10	4	4	0	0	0	0.087861	1	15822	15822		82.241	0	1	267540	+		37041	16235	25368	25457	37499	37499					0.04955882339629625
SLLAQLRQN	9	Unmodified	_SLLAQLRQN_					0	0	0			REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.8045043945312	2	521.803823	1041.59309	-1.3184	-0.00068794	2.4931	0.0013009	1.1747	0.00061299	521.8052136701577	20.125	0.089447	20.125	20.04	20.129	0					6	2	3	0	0	0	0.48389	1	5586	5586		34.173	1.3601	1	159720	+		37042	17171	25369	25458	37500	37500					0.073959500831279
SLLCLVLSLP	10	Unmodified	_SLLCLVLSLP_					0	0	0			REV__SULF2|p.P4L|1|0.44|ENSG00000196562|chr20:47757353-47757353|G/A|missense_variant	REV__SULF2|p.P4L|1|0.44|ENSG00000196562|chr20:47757353-47757353|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.21697998046875	3	353.215711	1056.6253	3.04	0.0010738	0.42709	0.00015086	3.4671	0.0012246	353.2158705639292	18.296	0.51198	18.296	18.19	18.702	0					15	10	2	0	0	0	0.61187	1	5461	5461		30.569	2.4874	1	5283400	+		37043	21613	25370	25459	37501	37501					0.09925601441909748
SLLEEQFQQGK	11	Unmodified	_SLLEEQFQQGK_					0	0	0		ENST00000484599.1_1_1:45243370-45243842:+|nuORF;ENSG00000142937|ENST00000396651|RPS8	ENST00000484599.1_1_1:45243370-45243842:+|nuORF	ENST00000484599.1_1_1:45243370-45243842:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	653.8355102539062	2	653.835517	1305.65648	0.063005	4.1195E-05	-0.094948	-6.208E-05	-0.031943	-2.0885E-05	653.8357318345458	36.079	0.12548	36.079	36.008	36.134	0					6	3	2	0	0	0	0.035268	1	13595	13595		112.3	37.252	1	52344			37044	4518	25371	25460	37502	37502					0.015878460096928393
SLLEMVPIV	9	Oxidation (M)	_SLLEM(Oxidation (M))VPIV_		SLLEM(1)VPIV		SLLEM(48)VPIV	0	0	1			REV__nc|nan|Q96LT7-2|C9orf72	REV__nc|nan|Q96LT7-2|C9orf72	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.5378112792969	3	339.528066	1015.56237	3.0194	0.0010252	0.54993	0.00018672	3.5693	0.0012119	339.52819538558634	22.863	0.31328	22.863	22.755	23.069	0					13	6	3	0	0	0	0.33044	1	7635	7635		47.657	47.657	1	1109800	+		37045	15369	25372	25461	37503	37503		592			0.05521035653885065
SLLETLNGQRL	11	Unmodified	_SLLETLNGQRL_					0	0	0		ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	622.3545532226562	2	622.353877	1242.6932	3.5011	0.0021789	-3.1968	-0.0019895	0.30427	0.00018936	622.3520911377606	30.36	0.11652	30.36	30.287	30.404	0					5	3	2	0	0	0	0.55968	1	9975	9975		30.318	14.311	1	80394			37046	3124	25373	25462	37504	37504					0.08156142626285146
SLLGAGRQSL	10	Unmodified	_SLLGAGRQSL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;nc|ENSG00000185658|Q9NSI6-4|BRWD1;BRWD1|p.F202Yfs*5|1|0.38|ENSG00000185658|chr21:39295748-39295749|AG/-|frameshift_variant;BRWD1|p.L209Wfs*2|1|0.31|ENSG00000185658|chr21:39294016-39294016|A/-|frameshift_variant;BRWD1|p.I251Nfs*3|1|0.35|ENSG00000185658|chr21:39293890-39293891|-/T|frameshift_variant;BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant;BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7914123535156	2	501.290548	1000.56654	0.76627	0.00038412	-0.71844	-0.00036015	0.047828	2.3975E-05	501.29010053105077	49.521	1.023	49.521	48.961	49.984	0					115	61	2	0	0	0	0.63851	1	15544	15544		18.262	0	1	168860			37047	7094	25374	25463	37505	37505					0.06628261191815454
SLLGAGYAKV	10	Unmodified	_SLLGAGYAKV_					0	0	0			REV__nc|ENSG00000180176|P07101-6|TH	REV__nc|ENSG00000180176|P07101-6|TH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.78460693359375	2	489.784567	977.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.696	1	21.696	21.196	22.196	0								0	0	0	0.39244	1	6270	6270		32.812	0.85756	1		+		37048	16799	25375	25464	37506	37506					0.06490644448615512
SLLGAVGLAAV	11	Unmodified	_SLLGAVGLAAV_					0	0	0		ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.972	1	35.972	35.472	36.472	0								0	0	0	0.36993	1	13532	13532		42.396	5.237	1				37049	1808	25376	25465	37507	37507					0.09987217482716915
SLLGAVGLAAV	11	Unmodified	_SLLGAVGLAAV_					0	0	0		ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.8000183105469	2	485.800217	969.585882	-0.56114	-0.0002726	3.2057	0.0015573	2.6446	0.0012847	485.8018162553323	34.689	1.9534	34.689	34.393	36.346	0					60	39	3	0	0	0	0.50161	1	14008	14008		44.117	3.3386	1	943690			37050	1808	25376	25465	37508	37508					0.09987217482716915
SLLGISAPGA	10	Unmodified	_SLLGISAPGA_					0	0	0			REV__ENST00000568920.1_1_16:57246991-57250108:+|nuORF	REV__ENST00000568920.1_1_16:57246991-57250108:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.25579833984375	2	443.255643	884.496732	-0.10895	-4.8291E-05	-0.053111	-2.3542E-05	-0.16206	-7.1832E-05	443.25576443425183	23.377	0.28059	23.377	23.193	23.473	0					11	6	2	0	0	0	0.58896	1	7700	7700		35.618	1.4457	1	71141	+		37051	15721	25377	25466	37509	37509					0.049863825231909686
SLLGPRVIG	9	Unmodified	_SLLGPRVIG_					0	0	0		ENST00000468249.1_1_22:50968911-50969740:-|nuORF;ENST00000405135.5_1_22:50968911-50969740:-|nuORF;ENST00000463472.1_1_22:50969089-50969740:-|nuORF;ENST00000469660.1_1_22:50969089-50970101:-|nuORF;ENSG00000177989|ENST00000329363|ODF3B	ENST00000468249.1_1_22:50968911-50969740:-|nuORF	ENST00000468249.1_1_22:50968911-50969740:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.28765869140625	2	456.287277	910.560001	0.23955	0.0001093	-0.46451	-0.00021195	-0.22496	-0.00010265	456.2870703943586	34.71	0.25632	34.71	34.505	34.761	0					9	6	2	0	0	0	0.35045	1	12909	12909		45.952	1.8352	1	72821			37052	6694	25378	25467	37510	37510					0.10114368031088361
SLLGRDAL	8	Unmodified	_SLLGRDAL_					0	0	0			REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7476806640625	2	422.747985	843.481417	-0.029014	-1.2266E-05	-0.89134	-0.00037681	-0.92036	-0.00038908	422.7475910559064	27.956	0.1391	27.956	27.864	28.003	0					5	3	2	0	0	0	0.5535	1	9224	9224		54.776	0	1	116630	+		37053	20067	25379	25468	37511	37511					0.053415157259905754
SLLGVAATLA	10	Unmodified	_SLLGVAATLA_					0	0	0		ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.27880859375	2	458.279118	914.543683	0.87944	0.00040303	-0.94011	-0.00043083	-0.060673	-2.7805E-05	458.2786942315904	34.335	0.35773	34.335	34.18	34.538	0					14	7	2	0	0	0	0.32758	1	13137	13137		64.207	5.4253	1	1419300			37054	6763	25380	25469	37512	37512					0.08299242074326685
SLLINRAAL	9	Unmodified	_SLLINRAAL_					0	0	0			REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.80596923828125	2	485.805834	969.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.225	1	22.225	21.725	22.725	0								0	0	0	0.21054	1	7490	7490		49.442	3.4896	1		+		37055	12987	25381	25470	37513	37513					0.11110039576851705
SLLKLKAEK	9	Unmodified	_SLLKLKAEK_					0	0	0		nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;SH3PXD2A|p.Q1067Vfs*5|1|0.08|ENSG00000107957|chr10:103602018-103602019|TG/-|frameshift_variant;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A;SH3PXD2A|p.V1096Cfs*22|1|0.36|ENSG00000107957|chr10:103601932-103601932|C/-|frameshift_variant;ENSG00000107957|ENST00000369774|SH3PXD2A	nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3374633789062	2	515.336967	1028.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.909	1	19.909	19.409	20.409	0								0	0	0	0.20989	1	5239	5239		49.536	5.1589	1				37056	2507	25382	25471	37514	37514					0.14619765925181127
SLLKSVQPD	9	Unmodified	_SLLKSVQPD_					0	0	0		nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000197136|Q9H6A9-2|PCNX3;ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000135749|A6NKB5-5|PCNX2	nc|ENSG00000135749|A6NKB5-5|PCNX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7788391113281	2	493.779482	985.544411	-1.5961	-0.00078813	0.56436	0.00027867	-1.0317	-0.00050946	493.78001407978945	27.966	0.31877	27.966	27.782	28.101	0					16	11	2	0	0	0	0.36892	1	8979	8979		44.377	1.5129	1	75203			37057	4018	25383	25472	37515	37515					0.05106036723384477
SLLLRTSSP	9	Unmodified	_SLLLRTSSP_					0	0	0		ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2884826660156	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.596	1	40.596	40.096	41.096	0								0	0	0	0.22284	1	16131	16131		47.657	1.7054	1				37058	1645	25384	25473	37516	37516					0.0730174296027144
SLLLRVRGH	9	Unmodified	_SLLLRVRGH_					0	0	0			REV__ENSG00000137154|ENST00000380394|RPS6	REV__ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8318481445312	2	525.830175	1049.6458	3.4509	0.0018146	-0.03941	-2.0723E-05	3.4115	0.0017939	525.8300960959721	25.339	0.11603	25.339	25.281	25.397	0					4	2	2	0	0	0	0.53083	1	8874	8874		29.15	1.2673	1	456840	+		37059	14904	25385	25474	37517	37517					0.1229595293661987
SLLLSLLN	8	Unmodified	_SLLLSLLN_					0	0	0			REV__ENST00000569693.5_1_15:73044165-73044228:-|nuORF	REV__ENST00000569693.5_1_15:73044165-73044228:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7757568359375	2	436.776211	871.537869	-0.40552	-0.00017712	0.21838	9.5383E-05	-0.18714	-8.1737E-05	436.7764250244954	38.426	0.079273	38.426	38.349	38.429	0					4	2	2	0	0	0	0.49216	1	14591	14591		60.972	0	1	102450	+		37060	20368	25386	25475	37518	37518					0.0969614356265538
SLLLSSLLTSA	11	Unmodified	_SLLLSSLLTSA_					0	0	0		ENST00000486101.1_1_17:73894933-73895551:-|nuORF	ENST00000486101.1_1_17:73894933-73895551:-|nuORF	ENST00000486101.1_1_17:73894933-73895551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.8888854980469	3	368.88854	1103.64379	3.564	0.0013147	-1.9159	-0.00070676	1.6481	0.00060796	368.8877440890865	27.06	0.1872	27.06	26.995	27.182	0					11	6	3	0	0	0	0.65797	1	8576	8576		31.634	0	1	77840			37061	10015	25387	25476	37519	37519					0.09611434617477244
SLLMWLTPL	9	Unmodified	_SLLMWLTPL_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8755187988281	3	358.540306	1072.59909	0.86907	0.0003116	3.1343	0.0011238	4.0034	0.0014354	358.5414158467468	31.061	0.26973	31.061	30.928	31.197	0					8	6	2	0	0	0	0.5654	1	11299	11299		25.574	6.4705	1	255710			37062	11689	25388	25477	37520	37520					0.06569332270441919
SLLNLPPLE	9	Unmodified	_SLLNLPPLE_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.29296875	2	498.292225	994.569897	-0.24026	-0.00011972	0.20036	9.9836E-05	-0.039901	-1.9882E-05	498.29223400419727	39.151	0.42372	39.151	39.043	39.467	0					67	22	4	0	0	0	0.47038	1	14061	14061		35.618	6.4687	1	2361000			37063	7269	25389	25478	37521	37521					0.07239511245802532
SLLPDPSLPA	10	Unmodified	_SLLPDPSLPA_					0	0	0			REV__SPHK2|p.V492*|1|0.22|ENSG00000063176|chr19:48629277-48629277|C/-|frameshift_variant	REV__SPHK2|p.V492*|1|0.22|ENSG00000063176|chr19:48629277-48629277|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.78515625	2	505.281857	1008.54916	-0.046762	-2.3628E-05	2.989	0.0015103	2.9422	0.0014866	505.78483599980257	23.161	0.31946	23.161	23.035	23.354	0					19	7	4	0	0	0	0.39566	1	7662	7662		56.721	1.9447	1	1841900	+		37064	13096	25390	25479	37522	37522					0.04522920866145341
SLLPFLRLPEW	11	Unmodified	_SLLPFLRLPEW_					0	0	0			REV__ENST00000511277.5_1_17:47283751-47283994:-|nuORF	REV__ENST00000511277.5_1_17:47283751-47283994:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.6004333496094	3	457.599212	1369.77581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.117	1	15.117	14.617	15.617	0								0	0	0	0.45674	1	3835	3835		14.086	0.57807	1		+		37065	19875	25391	25480	37523	37523					0.1057108442507797
SLLPIAPDLE	10	Unmodified	_SLLPIAPDLE_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.3041381835938	2	534.30279	1066.59103	1.1047	0.00059025	1.9563	0.0010453	3.061	0.0016355	534.3039076376893	33.532	0.27496	33.532	33.414	33.689	0					14	7	3	0	0	0	0.61187	1	11754	11754		32.812	2.3088	1	302200			37066	7148	25392	25481	37524	37524					0.06039476554656176
SLLQCQPQ	8	Unmodified	_SLLQCQPQ_					0	0	0			REV__nc|ENSG00000167535|P54284-2|CACNB3	REV__nc|ENSG00000167535|P54284-2|CACNB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.72943115234375	2	458.731477	915.448402	-0.9665	-0.00044337	-2.1969	-0.0010078	-3.1634	-0.0014511	458.73045358137875	31.794	0.17631	31.794	31.684	31.861	0					10	7	2	0	0	0	0.70055	1	10573	10573		33.516	1.9858	1	52921	+		37067	21109	25393	25482	37525	37525					-0.01270434388356989
SLLQDGERL	9	Unmodified	_SLLQDGERL_					0	0	0			REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;REV__ENST00000555122.1_1_14:105421221-105423995:-|nuORF	REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7796630859375	2	515.780013	1029.54547	0.032766	1.69E-05	-1.796	-0.00092632	-1.7632	-0.00090942	515.7791893537749	21.987	0.22169	21.987	21.898	22.119	0					12	5	3	0	0	0	0.047855	1	7068	7068		96.034	0	1	938320	+		37068	12119;20239	25394	25483	37526	37526					0.03188251092274186
SLLQDGERL	9	Unmodified	_SLLQDGERL_					0	0	0			REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;REV__ENST00000555122.1_1_14:105421221-105423995:-|nuORF	REV__AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7801513671875	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.773	1	21.773	21.273	22.273	0								0	0	0	0.22075	1	6371	6371		47.96	0	1		+		37069	12119;20239	25394	25483	37527	37527					0.03188251092274186
SLLQDKQQL	9	Unmodified	_SLLQDKQQL_					0	0	0		nc|ENSG00000100983|P48637-2|GSS;ENSG00000100983|ENST00000651619|GSS	nc|ENSG00000100983|P48637-2|GSS	nc|ENSG00000100983|P48637-2|GSS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8042602539062	2	536.803488	1071.59242	0.20597	0.00011057	0.6911	0.00037099	0.89707	0.00048155	536.8038534176889	21.212	0.23078	21.212	21.08	21.311	0					12	5	4	0	0	0	0.0023831	1	6712	6712		157.33	0	1	1864100			37070	2080	25395	25484	37528	37528					0.05949110643427957
SLLQPLNVEID	11	Unmodified	_SLLQPLNVEID_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__ENSEMBL:ENSBTAP00000038253	ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__ENSEMBL:ENSBTAP00000038253	ENSG00000167768|ENST00000252244|KRT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	620.8432006835938	2	620.84281	1239.67107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.455	1	56.455	55.955	56.955	0								0	0	0	0.21204	1	19386	19386		62.166	24.355	1			+	37071	630;638;625	25396	25485	37529	37529					0.06081918157860855
SLLQPLNVEID	11	Unmodified	_SLLQPLNVEID_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__ENSEMBL:ENSBTAP00000038253	ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__ENSEMBL:ENSBTAP00000038253	ENSG00000167768|ENST00000252244|KRT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	620.84326171875	2	620.84281	1239.67107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.227	1	56.227	55.727	56.727	0								0	0	0	0.33523	1	17630	17630		47.228	12.076	1			+	37072	630;638;625	25396	25485	37530	37530					0.06081918157860855
SLLQVCLQY	9	Unmodified	_SLLQVCLQY_					0	0	0			REV__ENSG00000132879|ENST00000251547|FBXO44	REV__ENSG00000132879|ENST00000251547|FBXO44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2861328125	2	533.78371	1065.55287	1.0972	0.00058569	0.34727	0.00018537	1.4445	0.00077106	533.7836503170581	38.795	0.17635	38.795	38.743	38.92	0					15	10	2	0	0	0	0.30951	1	12635	12635		49.442	3.4693	1	104950	+		37073	14682	25397	25486	37531	37531					0.02271267368359986
SLLRLKDY	8	Unmodified	_SLLRLKDY_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1;ENST00000484593.1_1_22:24462958-24467044:+|nuORF	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.671	1	39.671	39.171	40.171	0								0	0	0	1.7419	1	13329	13329		17.468	0	1				37074	1956	25398	25487	37532	37532					0.0781033333993264
SLLRQTKH	8	Unmodified	_SLLRQTKH_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.53228759765625	3	328.197931	981.571963	-0.026717	-8.7686E-06	-0.078497	-2.5763E-05	-0.10521	-3.4531E-05	328.19799606972697	24.085	0.14426	24.085	23.994	24.138	0					9	3	3	0	0	0	0.7976	1	7448	7448		20.947	1.8434	1	274660	+		37075	15764	25399	25488	37533	37533					0.08043984774280943
SLLRSQLQR	9	Unmodified	_SLLRSQLQR_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.55596923828125	3	367.556007	1099.64619	0.47195	0.00017347	-0.61381	-0.00022561	-0.14187	-5.2144E-05	367.55583990590475	16.817	0.21192	16.817	16.768	16.98	0					9	5	3	0	0	0	0.34452	1	4642	4642		46.457	3.5925	1	878660	+		37076	15144	25400	25489	37534	37534					0.10035327865784893
SLLSGALAGA	10	Unmodified	_SLLSGALAGA_					0	0	0		ENST00000600275.1_1_19:19212604-19217139:+|nuORF;ENST00000600251.1_1_19:19212604-19215795:+|nuORF;ENST00000594070.5_1_19:19206777-19217195:+|nuORF;ENSG00000181035|ENST00000318596|SLC25A42	ENST00000600275.1_1_19:19212604-19217139:+|nuORF	ENST00000600275.1_1_19:19212604-19217139:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2475280761719	2	430.247818	858.481082	-0.31975	-0.00013757	-0.14779	-6.3587E-05	-0.46754	-0.00020116	430.24780875176674	25.389	0.28507	25.389	25.296	25.581	0					14	7	3	0	0	0	0.33577	1	8074	8074		63.306	1.1989	1	329170			37077	6834	25401	25490	37535	37535					0.04618096006151973
SLLSGLLIK	9	Unmodified	_SLLSGLLIK_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.3131103515625	2	472.312961	942.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.708	1	40.708	40.208	41.208	0								0	0	0	0.28996	1	16184	16184		37.159	0	1				37078	3018	25402	25491	37536	37536					0.13776692005149016
SLLSSGLR	8	Unmodified	_SLLSSGLR_					0	0	0			REV__ENST00000453348.1_1_7:1778531-1778717:-|nuORF	REV__ENST00000453348.1_1_7:1778531-1778717:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.74786376953125	2	416.747985	831.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.407	1	29.407	28.907	29.907	0								0	0	0	1.7419	1	9570	9570		55.504	0	1		+		37079	19328	25403	25492	37537	37537					0.058935157259952575
SLLSTPLAAG	10	Unmodified	_SLLSTPLAAG_					0	0	0			REV__ENST00000571855.1_1_17:48740997-48741507:+|nuORF	REV__ENST00000571855.1_1_17:48740997-48741507:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.26837158203125	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.816	1	24.816	24.316	25.316	0								0	0	0	0.22634	1	8730	8730		60.972	9.6365	1		+		37080	20387	25404	25493	37538	37538					0.05582651694658125
SLLSTYALGP	10	Unmodified	_SLLSTYALGP_					0	0	0			REV__ENSG00000183114|ENST00000332947|FAM43B	REV__ENSG00000183114|ENST00000332947|FAM43B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2804870605469	2	511.281857	1020.54916	1.1348	0.00058021	-1.6238	-0.00083021	-0.48897	-0.00025	511.27988771328967	20.031	0.14197	20.031	19.97	20.112	0					9	4	3	0	0	0	0.65213	1	5319	5319		27.882	1.1893	1	52932	+		37081	16915	25405	25494	37539	37539					0.03970920866140659
SLLSVDDKGQ	10	Unmodified	_SLLSVDDKGQ_					0	0	0			REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2807006835938	2	531.277303	1060.54005	1.6856	0.00089552	4.0741	0.0021645	5.7597	0.00306	531.2796267950728	11.518	0.089609	11.518	11.463	11.553	0					7	4	2	0	0	0	0.6796	1	2254	2254		24.519	1.9395	1	31878	+		37082	13684	25406	25495	37540	37540					0.012205275098040147
SLLTAQSQ	8	Unmodified	_SLLTAQSQ_					0	0	0			REV__ENST00000567573.5_1_15:36871929-36940867:+|nuORF	REV__ENST00000567573.5_1_15:36871929-36940867:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	424.22991943359375	2	424.229625	846.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.263	1	18.263	17.763	18.763	0								0	0	0	1.7419	1	4521	4521		35.618	0	1		+		37083	17064	25407	25496	37541	37541					0.015332191094330483
SLLTVHQRIH	10	Unmodified	_SLLTVHQRIH_					0	0	0		ENSG00000197608|ENST00000594440|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841	ENSG00000197608|ENST00000594440|ZNF841	ENSG00000197608|ENST00000594440|ZNF841	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.3504638671875	2	602.351471	1202.68839	0.14456	8.7073E-05	-1.7427	-0.0010497	-1.5981	-0.00096263	602.3507707007349	23.219	0.1249	23.219	23.135	23.26	0					5	3	2	0	0	0	0.28675	1	6674	6674		56.721	9.0637	1	106040			37084	7480	25408	25497	37542	37542					0.09515303274179132
SLLTVHQRIH	10	Unmodified	_SLLTVHQRIH_					0	0	0		ENSG00000197608|ENST00000594440|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841	ENSG00000197608|ENST00000594440|ZNF841	ENSG00000197608|ENST00000594440|ZNF841	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.3507690429688	2	602.351471	1202.68839	-0.28991	-0.00017463	-0.70377	-0.00042392	-0.99368	-0.00059855	602.3510367955316	23.523	0.17119	23.523	23.433	23.604	0					11	4	3	0	0	0	0.073361	1	7805	7805		90.37	2.1929	1	926900			37085	7480	25408	25497	37543	37543					0.09515303274179132
SLLTWLNDG	9	Unmodified	_SLLTWLNDG_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7658386230469	2	509.763832	1017.51311	0.94735	0.00048293	2.1967	0.0011198	3.144	0.0016027	509.76497659941504	24.086	0.40219	24.086	23.875	24.277	0					14	5	3	0	0	0	0.12834	1	8081	8081		56.721	0	1	266190	+		37086	16412	25409	25498	37544	37544					0.0050546368928507945
SLLVLKRE	8	Unmodified	_SLLVLKRE_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.30804443359375	2	479.30821	956.601866	2.2807	0.0010932	-2.2266	-0.0010672	0.0541	2.5931E-05	479.30702797921157	41.223	0.13762	41.223	41.131	41.269	0					5	3	2	0	0	0	0.58597	1	16392	16392		51.335	0	1	66103	+		37087	17256	25410	25499	37545	37545					0.12182923719603878
SLLVPHQLR	9	Unmodified	_SLLVPHQLR_					0	0	0			REV__LDLRAD3|p.R219C|1|0.2|ENSG00000179241|chr11:36227285-36227285|C/T|missense_variant	REV__LDLRAD3|p.R219C|1|0.2|ENSG00000179241|chr11:36227285-36227285|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2468872070312	2	531.824558	1061.63456	0.28834	0.00015335	-0.17354	-9.229E-05	0.11481	6.1058E-05	531.8244334888559	16.105	0.36765	16.105	15.996	16.363	0					18	7	3	0	0	0	0.53083	1	4528	4528		29.15	6.1071	1	1237600	+		37088	16770	25411	25500	37546	37546					0.10621130842446291
SLLWFGALE	9	Unmodified	_SLLWFGALE_					0	0	0			REV__ENST00000479763.5_1_2:62728346-62728628:-|nuORF	REV__ENST00000479763.5_1_2:62728346-62728628:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2799072265625	2	518.279118	1034.54368	0.11501	5.9608E-05	1.0485	0.00054342	1.1635	0.00060303	518.2801988764417	24.773	0.13964	24.773	24.706	24.846	0					11	5	3	0	0	0	0.37197	1	7616	7616		44.117	5.3107	1	155800	+		37089	17097	25412	25501	37547	37547					0.027792420743026014
SLLWQLRQV	9	Unmodified	_SLLWQLRQV_					0	0	0			REV__nc|ENSG00000175267|A6NCI4-3|VWA3A	REV__nc|ENSG00000175267|A6NCI4-3|VWA3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	381.5591735839844	3	381.560869	1141.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.142	1	20.142	19.642	20.642	0								0	0	0	0.24724	1	5607	5607		35.152	0	1		+		37090	16607	25413	25502	37548	37548					0.09561400013922139
SLLWRSSQ	8	Unmodified	_SLLWRSSQ_					0	0	0			REV__nc|ENSG00000106013|Q92527-2|ANKRD7	REV__nc|ENSG00000106013|Q92527-2|ANKRD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	326.1785583496094	3	326.178536	975.513779	0.53117	0.00017325	-0.81114	-0.00026458	-0.27997	-9.1321E-05	326.1781650947407	16.446	0.2316	16.446	16.303	16.534	0					12	5	3	0	0	0	0.79567	1	4469	4469		14.137	0	1	605590	+		37091	20965	25414	25503	37549	37549					0.02504303129001073
SLLYYLPQ	8	Unmodified	_SLLYYLPQ_					0	0	0			REV__OR56A5|p.H59R|1|0.23|ENSG00000188691|chr11:5968319-5968319|T/C|missense_variant	REV__OR56A5|p.H59R|1|0.23|ENSG00000188691|chr11:5968319-5968319|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.775146484375	2	498.773668	995.532783	-0.68106	-0.0003397	2.3959	0.001195	1.7149	0.00085533	498.77465592060355	11.11	0.23262	11.11	10.96	11.193	0					12	8	2	0	0	0	0.78641	1	2175	2175		8.8223	0	1	148770	+		37092	16830	25415	25504	37550	37550					0.03483839700038516
SLMFAQYHLQF	11	Unmodified	_SLMFAQYHLQF_					0	0	0			REV__nc|ENSG00000100095|Q9BYH1-2|SEZ6L	REV__nc|ENSG00000100095|Q9BYH1-2|SEZ6L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	692.8408203125	2	692.839548	1383.66454	2.2037	0.0015268	-0.37669	-0.00026098	1.827	0.0012658	692.8392151219905	39.198	0.27957	39.198	39.096	39.376	0					17	6	3	0	0	0	0.44025	1	15463	15463		18.262	0	1	583560	+		37093	13513	25416	25505	37551	37551					-0.011942982745267727
SLMFLSLSQ	9	Unmodified	_SLMFLSLSQ_					0	0	0		ENSG00000172023|ENST00000305089|REG1B	ENSG00000172023|ENST00000305089|REG1B	ENSG00000172023|ENST00000305089|REG1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2728271484375	2	513.270435	1024.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.087	1	21.087	20.587	21.587	0								0	0	0	0.14033	1	6648	6648		62.107	7.3311	1				37094	6340	25417	25506	37552	37552					0.015035784770361715
SLMGKRVSSNI	11	Unmodified	_SLMGKRVSSNI_					0	0	0		ENSG00000146469|ENST00000367244|VIP	ENSG00000146469|ENST00000367244|VIP	ENSG00000146469|ENST00000367244|VIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.327392578125	2	596.329347	1190.64414	-1.8259	-0.0010889	-0.84047	-0.0005012	-2.6664	-0.0015901	596.3290246042918	35.359	0.28867	35.359	35.18	35.469	0					15	10	2	0	0	0	0.60656	1	12538	12538		36.447	0	1	55753			37095	4736	25418	25507	37553	37553					0.05644531065695446
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3031005859375	2	538.30207	1074.58959	1.4712	0.00079194	-0.11726	-6.312E-05	1.3539	0.00072882	538.3020052279504	37.313	0.24191	37.313	37.218	37.459	0					20	13	2	0	0	0	0.22837	1	12215	12215		58.23	19.424	1	104110			37096	3454	25419	25508	37554	37554					0.055275639849242
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3027954101562	2	538.30207	1074.58959	-0.25943	-0.00013965	1.4917	0.00080296	1.2322	0.00066331	538.3028757028701	37.378	0.18196	37.378	37.302	37.484	0					15	10	2	0	0	0	0.38666	1	12635	12635		42.864	10.114	1	92494			37097	3454	25419	25508	37555	37555					0.055275639849242
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3021850585938	2	538.30207	1074.58959	1.9149	0.0010308	-2.6889	-0.0014475	-0.77401	-0.00041665	538.3013822092834	37.548	0.50814	37.548	37.455	37.964	0					52	16	5	0	0	0	0.020674	1	14692	14692		120.87	35.708	1	788010			37098	3454	25419	25508	37556	37556					0.055275639849242
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3021850585938	2	538.30207	1074.58959	1.0099	0.00054363	0.026201	1.4104E-05	1.0361	0.00055773	538.3019538169631	37.38	0.20927	37.38	37.267	37.476	0					19	10	2	0	0	0	0.21263	1	13361	13361		60.118	60.118	1	146330			37099	3454	25419	25508	37557	37557					0.055275639849242
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8037109375	2	538.30207	1074.58959	0.69239	0.00037272	-0.12298	-6.62E-05	0.56941	0.00030652	538.3021889221047	37.476	0.45483	37.476	37.366	37.821	0					27	9	5	0	0	0	0.035062	1	14642	14642		104.06	104.06	1	1538800			37100	3454	25419	25508	37558	37558					0.055275639849242
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.3018798828125	2	538.30207	1074.58959	2.0245	0.0010898	-1.3979	-0.00075252	0.6266	0.0003373	538.3014716756475	37.51	0.68999	37.51	37.349	38.039	0					51	14	5	0	0	0	0.010494	1	14638	14638		139.97	40.596	1	3808800			37101	3454	25419	25508	37559	37559					0.055275639849242
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(67)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.535400390625	3	364.535444	1090.5845	-0.96461	-0.00035163	0.92567	0.00033744	-0.03894	-1.4195E-05	364.5357924187594	30.464	0.43644	30.464	30.346	30.782	0					20	15	2	0	0	0	0.15163	1	9996	9996		67.494	21.521	1	102300			37102	3454	25419	25509	37560	37560		150			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(80)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.53533935546875	3	364.535444	1090.5845	1.2776	0.00046575	-2.5664	-0.00093555	-1.2888	-0.00046981	364.53490482144184	30.734	0.59515	30.734	30.546	31.141	0					27	13	3	0	0	0	0.095583	1	11488	11488		80.455	14.989	1	1417000			37103	3454	25419	25509	37561	37561		150			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(110)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3001098632812	2	546.299527	1090.5845	1.8757	0.0010247	-1.5995	-0.00087382	0.27613	0.00015085	546.2988845177715	30.757	0.31856	30.757	30.59	30.909	0					18	7	3	0	0	0	0.032052	1	11553	11553		107.01	30.233	1	712660			37104	3454	25419	25509	37562	37562		150			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(83)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.5355224609375	3	364.535444	1090.5845	-2.0646	-0.00075261	-0.92959	-0.00033887	-2.9942	-0.0010915	364.53613704757674	30.477	0.31851	30.477	30.369	30.688	0					19	8	3	0	0	0	0.085655	1	10370	10370		82.75	17.285	1	140080			37105	3454	25419	25509	37563	37563		150			0.042832601222926314
SLMILSGLPAP	11	Unmodified	_SLMILSGLPAP_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.813720703125	2	549.81501	1097.61547	-1.4613	-0.00080344	0.071358	3.9234E-05	-1.3899	-0.00076421	549.8150297720748	14.309	0.090464	14.309	14.249	14.34	0					5	3	2	0	0	0	0.55968	1	3013	3013		45.972	25.025	1	168130			37106	1642	25420	25510	37564	37564					0.07056413436521325
SLMIYLVVGL	10	Unmodified	_SLMIYLVVGL_					0	0	0			REV__ENST00000531355.5_1_1:47027303-47048968:-|nuORF	REV__ENST00000531355.5_1_1:47027303-47048968:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.8890380859375	3	369.887594	1106.64095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.77	1	16.77	16.27	17.27	0								0	0	0	0.4201	1	4612	4612		22.58	2.5492	1		+		37107	13282	25421	25511	37565	37565					0.09189887958973486
SLMPCRQQA	9	Carbamidomethyl (C),Oxidation (M)	_SLM(Oxidation (M))PC(Carbamidomethyl (C))RQQA_	SLMPC(1)RQQA	SLM(1)PCRQQA	SLMPC(49)RQQA	SLM(49)PCRQQA	0	1	1		ENST00000222402.7_1_7:43995369-43995687:+|nuORF	ENST00000222402.7_1_7:43995369-43995687:+|nuORF	ENST00000222402.7_1_7:43995369-43995687:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7598266601562	2	553.757701	1105.50085	3.6222	0.0020058	0.19423	0.00010755	3.8164	0.0021134	553.757740312773	24.604	0.25925	24.604	24.496	24.756	0					12	5	3	0	0	0	0.30951	1	8516	8516		49.442	49.442	1	1324000			37108	8179	25422	25512	37566	37566	357	331			-0.047682193170430764
SLMQRLAGSL	10	Unmodified	_SLMQRLAGSL_					0	0	0			REV__ENST00000532345.1_1_11:62557457-62557526:+|nuORF	REV__ENST00000532345.1_1_11:62557457-62557526:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.5378112792969	3	359.202465	1074.58556	1.43	0.00051367	1.7601	0.00063222	3.1901	0.0011459	359.20309013252404	37.565	0.32927	37.565	37.455	37.785	0					15	10	2	0	0	0	0.65051	1	14695	14695		28.081	1.0342	1	160070	+		37109	20071	25423	25513	37567	37567					0.05125474491228488
SLMSALAAR	9	Unmodified	_SLMSALAAR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;ENST00000477455.5_1_2:74425768-74433128:+|nuORF;ENST00000488086.1_1_2:74425768-74433063:+|nuORF	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.25408935546875	2	460.25512	918.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.919	1	38.919	38.419	39.419	0								0	0	0	0.18645	1	15286	15286		52.937	14.131	1				37110	1382	25424	25514	37568	37568					0.033178448826333806
SLMSALAAR	9	Unmodified	_SLMSALAAR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;ENST00000477455.5_1_2:74425768-74433128:+|nuORF;ENST00000488086.1_1_2:74425768-74433063:+|nuORF	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2546081542969	2	460.25512	918.495686	-0.45367	-0.0002088	1.0432	0.00048014	0.58953	0.00027134	460.2549036576024	38.918	0.30373	38.918	38.746	39.049	0					13	6	3	0	0	0	0.12834	1	15317	15317		72.879	26.907	1	80573			37111	1382	25424	25514	37569	37569					0.033178448826333806
SLMSSELAR	9	Unmodified	_SLMSSELAR_					0	0	0		ENST00000366362.3_1_12:2973410-2973858:-|nuORF;ENST00000536066.1_1_12:2967806-2973707:-|nuORF;FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1	ENST00000366362.3_1_12:2973410-2973858:-|nuORF	ENST00000366362.3_1_12:2973410-2973858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.253662109375	2	497.255317	992.49608	-1.1526	-0.00057311	-2.307	-0.0011472	-3.4596	-0.0017203	497.25382974654735	36.243	0.11917	36.243	36.183	36.302	0					9	6	2	0	0	0	0.35021	1	12277	12277		45.972	0.020292	1	68174			37112	2653	25425	25515	37570	37570					-0.00046780188165485015
SLMVVYTPI	9	Unmodified	_SLMVVYTPI_					0	0	0		ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant;nc|ENSG00000154262|Q8N139-2|ABCA6;ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant;ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-3|ABCA6	ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant	ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.28411865234375	2	511.783179	1021.5518	1.2373	0.00063322	1.8165	0.00092963	3.0537	0.0015629	511.7839086837461	32.911	0.89348	32.911	32.555	33.448	0					28	17	4	0	0	0	0.26904	1	12656	12656		53.351	0	1	1311800			37113	8	25426	25516	37571	37571					0.0418905299944754
SLMVVYTPI	9	Unmodified	_SLMVVYTPI_					0	0	0		ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant;nc|ENSG00000154262|Q8N139-2|ABCA6;ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant;ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-3|ABCA6	ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant	ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2848815917969	2	511.783179	1021.5518	3.1058	0.0015895	-0.43656	-0.00022342	2.6692	0.0013661	511.7830427550264	32.898	0.54321	32.898	32.64	33.183	0					23	9	4	0	0	0	0.35045	1	12553	12553		45.952	3.5558	1	1158000			37114	8	25426	25516	37572	37572					0.0418905299944754
SLNFGGNLAEL	11	Unmodified	_SLNFGGNLAEL_					0	0	0			REV__nc|ENSG00000107815|Q96RR1-3|TWNK	REV__nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.7931518554688	2	567.793121	1133.57169	0.28487	0.00016174	-0.13938	-7.9139E-05	0.14549	8.2606E-05	567.7930521969189	36.633	0.19091	36.633	36.55	36.741	0					9	5	2	0	0	0	0.59204	1	14289	14289		37.508	2.3561	1	122740	+		37115	13862	25427	25517	37573	37573					0.010245202637634065
SLNGVVTVVY	10	Unmodified	_SLNGVVTVVY_					0	0	0			REV__nc|ENSG00000181214|Q6IF36|OR8G2P	REV__nc|ENSG00000181214|Q6IF36|OR8G2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7871704101562	2	525.795132	1049.57571	1.6275	0.00085572	-2.0362	-0.0010706	-0.40875	-0.00021492	525.7937481011264	33.191	0.25657	33.191	33.091	33.348	0					14	5	4	0	0	0	0.12896	1	12557	12557		90.37	33.649	1	2435000	+		37116	21149	25428	25518	37574	37574					0.052906097574805244
SLNHQVALI	9	Unmodified	_SLNHQVALI_					0	0	0			REV__ENSG00000230453|ENST00000684830|ANKRD18B	REV__ENSG00000230453|ENST00000684830|ANKRD18B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.1942443847656	3	332.194186	993.56073	0.52256	0.00017359	-0.5085	-0.00016892	0.014056	4.6694E-06	332.1940384413682	17.497	0.72761	17.497	17.007	17.735	0					50	18	4	0	0	0	0.50461	1	4846	4846		31.53	4.8369	1	3559700	+		37117	17642	25429	25519	37575	37575					0.06369162680130103
SLNHVSTK	8	Unmodified	_SLNHVSTK_					0	0	0			REV__ENSG00000155714|ENST00000424898|PDZD9	REV__ENSG00000155714|ENST00000424898|PDZD9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2431945800781	2	443.243067	884.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.33	1	17.33	16.83	17.83	0								0	0	0	1.7419	1	4324	4324		53.351	3.9099	1		+		37118	15605	25430	25520	37576	37576					0.024723277206135208
SLNIINSLL	9	Unmodified	_SLNIINSLL_					0	0	0			REV__tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	REV__tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7982482910156	2	493.797675	985.580796	-2.5475	-0.001258	3.3511	0.0016548	0.8036	0.00039682	493.79945962422244	38.787	0.086178	38.787	38.748	38.835	0					7	4	2	0	0	0	0.3269	1	13874	13874		47.96	0.043923	1	47972	+		37119	22108	25431	25521	37577	37577					0.08742913620085346
SLNKQIAQK	9	Unmodified	_SLNKQIAQK_					0	0	0		ENST00000460781.1_1_2:118709253-118753033:-|nuORF;ENSG00000125633|ENST00000376300|CCDC93	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3065185546875	2	515.306198	1028.59784	0.17368	8.9497E-05	0.47906	0.00024686	0.65274	0.00033636	515.3065522357906	16.818	0.070076	16.818	16.77	16.84	0					5	3	2	0	0	0	0.22837	1	3906	3906		58.23	12.258	1	46851			37120	3423	25432	25522	37578	37578					0.08468834225891442
SLNKQIAQK	9	Unmodified	_SLNKQIAQK_					0	0	0		ENST00000460781.1_1_2:118709253-118753033:-|nuORF;ENSG00000125633|ENST00000376300|CCDC93	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	ENST00000460781.1_1_2:118709253-118753033:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3065185546875	2	515.306198	1028.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.162	1	17.162	16.662	17.662	0								0	0	0	0.11736	1	4793	4793		67.494	9.2637	1				37121	3423	25432	25522	37579	37579					0.08468834225891442
SLNLTKVKP	9	Unmodified	_SLNLTKVKP_					0	0	0			REV__nc|ENSG00000290798|Q9H1B4-5|NXF5	REV__nc|ENSG00000290798|Q9H1B4-5|NXF5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.3131103515625	2	500.313492	998.612431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.222	1	22.222	21.722	22.722	0								0	0	0	0.15687	1	6247	6247		58.23	3.4536	1		+		37122	17804	25433	25523	37580	37580					0.11306906374045411
SLNPISARAV	10	Unmodified	_SLNPISARAV_					0	0	0		ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2996215820312	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.609	1	27.609	27.109	28.109	0								0	0	0	0.40797	1	8529	8529		28.081	0.19925	1				37123	8392	25434	25524	37581	37581					0.06996547708831713
SLNQGYSLV	9	Unmodified	_SLNQGYSLV_					0	0	0			REV__LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	REV__LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7551574707031	2	490.756007	979.497461	-0.053236	-2.6126E-05	-0.38035	-0.00018666	-0.43359	-0.00021279	490.75564172720505	26.089	0.19272	26.089	26.026	26.219	0					11	7	2	0	0	0	0.28897	1	7887	7887		51.193	3.2332	1	51535	+		37124	14827	25435	25525	37582	37582					0.006891771722280282
SLNQIITVQL	10	Unmodified	_SLNQIITVQL_					0	0	0			REV__ENST00000498732.5_1_X:139854285-139854417:+|nuORF	REV__ENST00000498732.5_1_X:139854285-139854417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.8353881835938	2	564.834788	1127.65502	1.438	0.00081221	-0.86189	-0.00048683	0.57607	0.00032539	564.8342958542784	24.083	0.21856	24.083	23.937	24.155	0					8	5	2	0	0	0	0.28855	1	7475	7475		68.626	1.7056	1	81663	+		37125	19801	25436	25526	37583	37583					0.0963025671160267
SLNQIYVVR	9	Unmodified	_SLNQIYVVR_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.5449523925781	3	364.545108	1090.61349	-0.1135	-4.1377E-05	-0.18657	-6.8014E-05	-0.30008	-0.00010939	364.54495196852514	30.986	0.30976	30.986	30.831	31.141	0					9	6	2	0	0	0	0.4966	1	11546	11546		32.751	9.2278	1	419620	+		37126	15612	25437	25527	37584	37584					0.07181120742939129
SLNQTVTQLQ	10	Unmodified	_SLNQTVTQLQ_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000554831.1_1_14:56146303-56146414:+|nuORF	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3043823242188	2	566.303852	1130.59315	0.26055	0.00014755	0.1424	8.0644E-05	0.40295	0.00022819	566.3039996327414	25.141	0.19583	25.141	25.046	25.242	0					9	4	3	0	0	0	0.12763	1	8565	8565		90.601	0	1	382000			37127	3486	25438	25528	37585	37585					0.03307905292490432
SLPAPAPLW	9	Unmodified	_SLPAPAPLW_					0	0	0		nc|ENSG00000178928|Q8N7U7-2|TPRX1;nc|ENSG00000178928|Q8N7U7|TPRX1;ENSG00000178928|ENST00000698655|TPRX1	nc|ENSG00000178928|Q8N7U7-2|TPRX1	nc|ENSG00000178928|Q8N7U7-2|TPRX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.26983642578125	2	476.268553	950.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.841	1	45.841	45.341	46.341	0								0	0	0	0.31623	1	18366	18366		31.955	1.4512	1				37128	6739	25439	25529	37586	37586					0.0453127676545364
SLPCAAGF	8	Unmodified	_SLPCAAGF_					0	0	0			REV__XDH|p.T311Nfs*8|1|0.17|ENSG00000158125|chr2:31383107-31383108|-/T|frameshift_variant	REV__XDH|p.T311Nfs*8|1|0.17|ENSG00000158125|chr2:31383107-31383108|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.1822509765625	2	383.183632	764.352711	-2.16	-0.00082767	-2.4094	-0.00092326	-4.5694	-0.0017509	383.182772904054	27.45	0.21532	27.45	27.32	27.536	0					7	5	2	0	0	0	0.72892	1	8988	8988		29.842	0	1	94205	+		37129	15677	25440	25530	37587	37587					-0.03889162508596655
SLPDLTTPLK	10	Unmodified	_SLPDLTTPLK_					0	0	0		nc|ENSG00000005483|Q8IZD2-6|KMT2E;KMT2E|p.K873Nfs*8|4|0.41|ENSG00000005483|chr7:105106538-105106538|A/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E	nc|ENSG00000005483|Q8IZD2-6|KMT2E	nc|ENSG00000005483|Q8IZD2-6|KMT2E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.8162841796875	2	542.816064	1083.61758	2.0224	0.0010978	-0.99028	-0.00053754	1.0321	0.00056026	542.8153650566364	40.884	0.37142	40.884	40.702	41.074	0					10	6	3	0	0	0	0.27065	1	16236	16236		70.816	22.857	1	406770			37130	11411	25441	25531	37588	37588					0.07911165445966617
SLPDTTATL	9	Unmodified	_SLPDTTATL_					0	0	0		nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA	nc|ENSG00000110721|P35790-2|CHKA	nc|ENSG00000110721|P35790-2|CHKA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2677001953125	2	459.742565	917.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.067	1	39.067	38.567	39.567	0								0	0	0	0.30504	1	15410	15410		34.173	0	1				37131	2638	25442	25532	37589	37589					0.008540685610569199
SLPEAPAVR	9	Unmodified	_SLPEAPAVR_					0	0	0			REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	REV__MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.26800537109375	2	470.266542	938.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.72	1	42.72	42.22	43.22	0								0	0	0	0.30504	1	16163	16163		34.173	0	1		+		37132	16264	25443	25533	37590	37590					0.0468118727176261
SLPEFQQF	8	Unmodified	_SLPEFQQF_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000470528.1_1_20:39791870-39791927:+|nuORF;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2452087402344	2	498.245275	994.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.786	1	47.786	47.286	48.286	0								0	0	0	1.7419	1	19046	19046		30.504	2.2494	1				37133	3353	25444	25534	37591	37591					-0.021462078564809417
SLPGGHGDHVF	11	Unmodified	_SLPGGHGDHVF_					0	0	0		ENST00000337318.7_2_10:126309750-126310008:-|nuORF	ENST00000337318.7_2_10:126309750-126310008:-|nuORF	ENST00000337318.7_2_10:126309750-126310008:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7673950195312	2	561.76998	1121.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.859	1	23.859	23.359	24.359	0								0	0	0	0.45144	1	7225	7225		25.574	0.44807	1				37134	8703	25445	25535	37592	37592					-0.030494998476797264
SLPGVSHVE	9	Unmodified	_SLPGVSHVE_					0	0	0			REV__EPHA8|p.R171H|1|0.25|ENSG00000070886|chr1:22576569-22576569|G/A|missense_variant	REV__EPHA8|p.R171H|1|0.25|ENSG00000070886|chr1:22576569-22576569|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.7430725097656	2	462.742899	923.471246	-0.77813	-0.00036007	1.6429	0.00076023	0.86474	0.00040015	462.7432593425721	22.189	0.19904	22.189	22.132	22.331	0					9	6	2	0	0	0	0.35045	1	6506	6506		45.952	0	1	70655	+		37135	20642	25446	25536	37593	37593					0.006449080007655539
SLPKKLALL	9	Unmodified	_SLPKKLALL_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.8358154296875	2	491.836603	981.658653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.395	1	36.395	35.895	36.895	0								0	0	0	0.3304	1	13723	13723		29.15	0	1				37136	2324	25447	25537	37594	37594					0.1670897127612534
SLPLPQDLL	9	Unmodified	_SLPLPQDLL_					0	0	0		ENST00000424690.1_1_3:174952966-174953104:-|nuORF	ENST00000424690.1_1_3:174952966-174953104:-|nuORF	ENST00000424690.1_1_3:174952966-174953104:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2923889160156	2	498.292225	994.569897	0.69083	0.00034424	-0.10511	-5.2373E-05	0.58573	0.00029186	498.29232095006967	39.404	0.64213	39.404	39.282	39.924	0					83	24	5	0	0	0	0.48389	1	15135	15135		34.173	0	1	28809000			37137	9422	25448	25538	37595	37595					0.07239511245813901
SLPLVDTHSK	10	Unmodified	_SLPLVDTHSK_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000487938.5_1_10:17278234-17279267:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.8035278320312	2	548.803488	1095.59242	0.50634	0.00027788	2.5981	0.0014258	3.1044	0.0017037	548.8048134520536	26.796	0.69631	26.796	26.314	27.01	0					57	16	6	0	0	0	0.4287	1	9173	9173		53.089	7.1167	1	1171800			37138	1132	25449	25539	37596	37596					0.04845110643418593
SLPLVDTHSK	10	Unmodified	_SLPLVDTHSK_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000487938.5_1_10:17278234-17279267:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.8031005859375	2	548.803488	1095.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.327	1	26.327	25.827	26.827	0								0	0	0	0.38879	1	8266	8266		33.922	2.3918	1				37139	1132	25449	25539	37597	37597					0.04845110643418593
SLPNVFSM	8	Unmodified	_SLPNVFSM_					0	0	0			REV__ENSG00000172399|ENST00000307128|MYOZ2	REV__ENSG00000172399|ENST00000307128|MYOZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7231140136719	2	447.723121	893.431689	0.62161	0.00027831	-2.8948	-0.0012961	-2.2732	-0.0010178	447.722117865475	11.47	0.18134	11.47	11.336	11.517	0					12	5	3	0	0	0	0.76283	1	2329	2329		25.45	4.9683	1	271460	+		37140	16462	25450	25540	37598	37598					-0.019289352743157906
SLPPNQAF	8	Unmodified	_SLPPNQAF_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.22705078125	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.21	1	40.21	39.71	40.71	0								0	0	0	1.7419	1	15949	15949		28.254	1.4582	1				37141	11466	25451	25541	37599	37599					-0.0021045968237558554
SLPPPIIQPM	10	Unmodified	_SLPPPIIQPM_					0	0	0		nc|ENSG00000155966|P51816-7|AFF2;AFF2|p.K978Rfs*65|1|0.46|ENSG00000155966|chrX:148966804-148966804|A/-|frameshift_variant;AFF2|p.Q1237Pfs*15|1|0.14|ENSG00000155966|chrX:148987448-148987449|-/C|frameshift_variant;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-7|AFF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.876953125	3	364.875577	1091.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.692	1	18.692	18.192	19.192	0								0	0	0	0.3598	1	5514	5514		41.427	1.3684	1				37142	87	25452	25542	37600	37600					0.06276430782099851
SLPPQAVKKS	10	Unmodified	_SLPPQAVKKS_					0	0	0			REV__nc|ENSG00000167962|Q86UK7-4|ZNF598	REV__nc|ENSG00000167962|Q86UK7-4|ZNF598	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.21551513671875	3	352.213358	1053.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.724	1	17.724	17.224	18.224	0								0	0	0	0.40862	1	4499	4499		20.03	2.8637	1		+		37143	16224	25453	25543	37601	37601					0.09358004885712035
SLPPSPPAAY	10	Unmodified	_SLPPSPPAAY_					0	0	0			REV__ENST00000470432.5_1_1:150480640-150482267:+|nuORF	REV__ENST00000470432.5_1_1:150480640-150482267:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2586975097656	2	500.260925	998.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.417	1	26.417	25.917	26.917	0								0	0	0	0.3428	1	8503	8503		44.117	14.275	1		+		37144	12763	25454	25544	37602	37602					0.007983651776044098
SLPPVAGSLE	10	Unmodified	_SLPPVAGSLE_					0	0	0		ENST00000514480.1_2_4:76439745-76440060:+|nuORF	ENST00000514480.1_2_4:76439745-76440060:+|nuORF	ENST00000514480.1_2_4:76439745-76440060:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2659912109375	2	485.266207	968.517862	-0.091031	-4.4174E-05	-0.069836	-3.3889E-05	-0.16087	-7.8064E-05	485.2662614301688	31.308	1.0203	31.308	31.188	32.208	0					60	22	6	0	0	0	0.55603	1	11933	11933		39.253	3.6345	1	42569000			37145	10256	25455	25545	37603	37603					0.0323434783203993
SLPQAATFG	9	Unmodified	_SLPQAATFG_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.2318420410156	2	446.232168	890.449782	-0.44197	-0.00019722	0.19304	8.614E-05	-0.24893	-0.00011108	446.2322433571924	40.06	0.65799	40.06	39.837	40.495	0					57	35	3	0	0	0	0.30951	1	14205	14205		49.442	1.7842	1	570070			37146	3703	25456	25546	37604	37604					0.0001752297204120623
SLPQSDFQL	9	Unmodified	_SLPQSDFQL_					0	0	0		nc|ENSG00000140577|Q6UUV7-3|CRTC3;ENSG00000140577|ENST00000268184|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7587280273438	2	517.761289	1033.50803	0.070985	3.6753E-05	-0.475	-0.00024594	-0.40402	-0.00020919	518.2637892763455	30.065	0.13951	30.065	29.984	30.123	0					8	5	2	0	0	0	0.35021	1	9834	9834		45.972	0.020292	1	52382			37147	4399	25457	25547	37605	37605					-0.007388401733351202
SLPRQIAIRQQ	11	Unmodified	_SLPRQIAIRQQ_					0	0	0			REV__ENST00000487169.5_1_2:242182083-242186294:-|nuORF	REV__ENST00000487169.5_1_2:242182083-242186294:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2618103027344	3	437.261482	1308.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.805	1	18.805	18.305	19.305	0								0	0	0	0.45674	1	4981	4981		17.167	0.44936	1		+		37148	19677	25458	25548	37606	37606					0.12058646365676395
SLPSLILNPC	10	Unmodified	_SLPSLILNPC_					0	0	0			REV__ENSG00000167711|ENST00000453066|SERPINF2	REV__ENSG00000167711|ENST00000453066|SERPINF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.8648376464844	3	352.863449	1055.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.087	1	12.087	11.587	12.587	0								0	0	0	0.40797	1	2634	2634		28.081	1.3886	1		+		37149	16210	25459	25549	37607	37607					0.04295553885413028
SLPSRAAAL	9	Unmodified	_SLPSRAAAL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2608337402344	2	443.261259	884.507966	0.58086	0.00025747	-1.2346	-0.00054723	-0.6537	-0.00028976	443.2605635576419	28.646	0.29262	28.646	28.564	28.857	0					11	7	2	0	0	0	0.25716	1	10138	10138		54.776	1.4249	1	403980			37150	2354	25460	25550	37608	37608					0.0610920461731439
SLPSRAAAL	9	Unmodified	_SLPSRAAAL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.2613830566406	2	443.261259	884.507966	-1.1551	-0.00051203	1.5796	0.00070016	0.42442	0.00018813	443.26182947034624	28.38	0.153	28.38	28.319	28.472	0					9	5	2	0	0	0	0.30841	1	9139	9139		49.536	0.32525	1	199820			37151	2354	25460	25550	37609	37609					0.0610920461731439
SLPSRAAAL	9	Unmodified	_SLPSRAAAL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2613830566406	2	443.261259	884.507966	0.51782	0.00022953	-0.35649	-0.00015802	0.16133	7.1511E-05	443.2611619865809	28.62	0.21336	28.62	28.565	28.778	0					9	4	3	0	0	0	0.1424	1	10542	10542		69.628	19.603	1	853300			37152	2354	25460	25550	37610	37610					0.0610920461731439
SLPSTMRTI	9	Unmodified	_SLPSTMRTI_					0	0	0			REV__ENST00000370418.7_1_10:101816855-101825078:-|nuORF	REV__ENST00000370418.7_1_10:101816855-101825078:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2719421386719	2	503.273509	1004.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.881	1	33.881	33.381	34.381	0								0	0	0	0.21054	1	11939	11939		49.442	2.9848	1		+		37153	18634	25461	25551	37611	37611					0.03038096708530702
SLPTGVQVF	9	Unmodified	_SLPTGVQVF_					0	0	0			REV__nc|ENSG00000253309|A8MV23|SERPINE3	REV__nc|ENSG00000253309|A8MV23|SERPINE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.26324462890625	2	474.263468	946.512382	0.6084	0.00028854	-1.0564	-0.000501	-0.44798	-0.00021246	474.2628851868745	40.541	0.34149	40.541	40.42	40.761	0					32	14	3	0	0	0	0.18605	1	15951	15951		63.306	15.649	1	682310	+		37154	21231	25462	25552	37612	37612					0.03698669040238656
SLPTGVQVF	9	Unmodified	_SLPTGVQVF_					0	0	0			REV__nc|ENSG00000253309|A8MV23|SERPINE3	REV__nc|ENSG00000253309|A8MV23|SERPINE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.26300048828125	2	474.263468	946.512382	-2.5888	-0.0012278	1.6515	0.00078324	-0.93732	-0.00044453	474.2642441262813	40.318	0.15531	40.318	40.248	40.404	0					13	8	2	0	0	0	0.36892	1	14320	14320		44.377	0.26039	1	68508	+		37155	21231	25462	25552	37613	37613					0.03698669040238656
SLPTGVQVF	9	Unmodified	_SLPTGVQVF_					0	0	0			REV__nc|ENSG00000253309|A8MV23|SERPINE3	REV__nc|ENSG00000253309|A8MV23|SERPINE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2631530761719	2	474.263468	946.512382	0.69643	0.00033029	-0.98888	-0.00046899	-0.29245	-0.0001387	474.26280469898813	40.495	0.37592	40.495	40.342	40.718	0					16	8	3	0	0	0	0.24095	1	16070	16070		56.721	1.2168	1	590300	+		37156	21231	25462	25552	37614	37614					0.03698669040238656
SLPTHDPSPL	10	Unmodified	_SLPTHDPSPL_					0	0	0		nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2	nc|ENSG00000141736|P04626-3|ERBB2	nc|ENSG00000141736|P04626-3|ERBB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.274658203125	2	532.274564	1062.53457	0.28861	0.00015362	0.51717	0.00027528	0.80578	0.0004289	532.2747564102204	31.627	0.34043	31.627	31.454	31.795	0					13	7	2	0	0	0	0.46215	1	11917	11917		49.442	1.7842	1	196460			37157	4467	25463	25553	37615	37615					0.0058084871798200766
SLPTRINIMN	10	Unmodified	_SLPTRINIMN_					0	0	0		nc|ENSG00000081985|Q99665-2|IL12RB2;nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.8799743652344	3	386.881502	1157.62268	-1.1887	-0.00045989	-2.3376	-0.00090439	-3.5264	-0.0013643	386.8804358798568	27.168	0.15111	27.168	27.102	27.253	0					7	5	2	0	0	0	0.66699	1	8635	8635		26.063	3.4837	1	111150			37158	1667	25464	25554	37616	37616					0.050171460369710985
SLPYKCIIQ	9	Unmodified	_SLPYKCIIQ_					0	0	0			REV__GNPAT|p.L587P|1|0.34|ENSG00000116906|chr1:231275237-231275237|T/C|missense_variant	REV__GNPAT|p.L587P|1|0.34|ENSG00000116906|chr1:231275237-231275237|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7960815429688	2	532.794078	1063.5736	0.71746	0.00038226	2.4684	0.0013151	3.1858	0.0016974	532.7955758738611	41.249	0.34718	41.249	41.159	41.506	0					19	8	4	0	0	0	0.0792	1	16386	16386		84.916	8.1414	1	385450	+		37159	20696	25465	25555	37617	37617					0.044358577480352324
SLQAKLERL	9	Unmodified	_SLQAKLERL_					0	0	0		nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155	nc|ENSG00000113569|O75694-2|NUP155	nc|ENSG00000113569|O75694-2|NUP155	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.3222045898438	2	529.321848	1056.62914	-1.174	-0.00062145	2.0149	0.0010665	0.84082	0.00044506	529.3228828628829	18.144	0.20091	18.144	18.034	18.235	0					7	4	2	0	0	0	0.22837	1	4687	4687		58.23	0	1	435080			37160	2809	25466	25556	37618	37618					0.10309407260001535
SLQAQVVL	8	Unmodified	_SLQAQVVL_					0	0	0		nc|ENSG00000288550|Q8NAC3-4|IL17RC;ENST00000483582.5_1_3:9958999-9974679:+|nuORF;nc|ENSG00000288550|Q8NAC3-6|IL17RC;nc|ENSG00000288550|Q8NAC3-7|IL17RC;nc|ENSG00000288550|Q8NAC3-8|IL17RC;nc|ENSG00000288550|Q8NAC3-3|IL17RC;nc|ENSG00000288550|Q8NAC3-5|IL17RC;ENST00000451271.5_1_3:9958923-9975274:+|nuORF;ENSG00000163702|ENST00000403601|IL17RC;nc|ENSG00000288550|Q8NAC3|IL17RC	nc|ENSG00000288550|Q8NAC3-4|IL17RC	nc|ENSG00000288550|Q8NAC3-4|IL17RC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.2578430175781	2	429.258185	856.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.016	1	27.016	26.516	27.516	0								0	0	0	1.7419	1	8562	8562		71.877	0	1				37161	5598	25467	25557	37619	37619					0.06782686385793113
SLQAQVVL	8	Unmodified	_SLQAQVVL_					0	0	0		nc|ENSG00000288550|Q8NAC3-4|IL17RC;ENST00000483582.5_1_3:9958999-9974679:+|nuORF;nc|ENSG00000288550|Q8NAC3-6|IL17RC;nc|ENSG00000288550|Q8NAC3-7|IL17RC;nc|ENSG00000288550|Q8NAC3-8|IL17RC;nc|ENSG00000288550|Q8NAC3-3|IL17RC;nc|ENSG00000288550|Q8NAC3-5|IL17RC;ENST00000451271.5_1_3:9958923-9975274:+|nuORF;ENSG00000163702|ENST00000403601|IL17RC;nc|ENSG00000288550|Q8NAC3|IL17RC	nc|ENSG00000288550|Q8NAC3-4|IL17RC	nc|ENSG00000288550|Q8NAC3-4|IL17RC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2578125	2	429.258185	856.501818	-0.4347	-0.0001866	0.26483	0.00011368	-0.16986	-7.2916E-05	429.25822716584923	27.213	0.26997	27.213	27.103	27.373	0					12	5	3	0	0	0	0.24806	1	9704	9704		104.75	0	1	753070			37162	5598	25467	25557	37620	37620					0.06782686385793113
SLQASLARP	9	Unmodified	_SLQASLARP_					0	0	0		BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant;nc|ENSG00000011114|Q9P203-3|BTBD7;BTBD7|p.Y440Mfs*28|1|0.11|ENSG00000011114|chr14:93263838-93263838|A/-|frameshift_variant;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7	BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant	BTBD7|p.F167Lfs*15|1|0.27|ENSG00000011114|chr14:93294519-93294519|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.77130126953125	2	471.771991	941.529429	-0.17917	-8.4527E-05	-1.1192	-0.00052803	-1.2984	-0.00061256	471.7714940971672	21.042	0.10324	21.042	20.992	21.095	0					4	2	2	0	0	0	0.30841	1	6039	6039		49.536	1.5765	1	87908			37163	328	25468	25558	37621	37621					0.056325896460293734
SLQATLLLK	9	Unmodified	_SLQATLLLK_					0	0	0		nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.81561279296875	2	493.815867	985.617182	0.64763	0.00031981	-0.91422	-0.00045146	-0.26659	-0.00013165	493.8154022324351	36.321	0.32944	36.321	36.242	36.572	0					31	9	5	0	0	0	0.061298	1	14124	14124		85.161	0	1	1709200			37164	11712	25469	25559	37622	37622					0.12379790516820321
SLQDYIAVK	9	Unmodified	_SLQDYIAVK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7874145507812	2	518.787307	1035.56006	0.28241	0.00014651	-4.465	-0.0023164	-4.1826	-0.0021699	519.2853429916627	39.244	0.32499	39.244	39.079	39.404	0					18	7	4	0	0	0	0.026848	1	15473	15473		112.11	37.064	1	250670			37165	1704	25470	25560	37623	37623					0.04370323240391372
SLQDYIAVKEK	11	Unmodified	_SLQDYIAVKEK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.2410583496094	3	431.906482	1292.69762	-0.47602	-0.00020559	0.33305	0.00014385	-0.14296	-6.1747E-05	431.906877336403	33.891	0.16083	33.891	33.812	33.973	0					7	3	3	0	0	0	0.4145	1	12932	12932		50.484	5.8441	1	101860			37166	1704	25471	25561	37624	37624					0.06297607049145881
SLQEARSF	8	Unmodified	_SLQEARSF_					0	0	0		EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant;ENSG00000012232|ENST00000220562|EXTL3	EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant	EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.24029541015625	2	469.240524	936.466495	0.23669	0.00011106	-1.1704	-0.0005492	-0.93371	-0.00043813	469.2400987556664	21.616	0.23132	21.616	21.518	21.75	0					11	5	3	0	0	0	0.63077	1	6910	6910		44.117	0	1	619260			37167	1057	25472	25562	37625	37625					-0.004279761419979877
SLQEVLPDIT	10	Unmodified	_SLQEVLPDIT_					0	0	0		nc|ENSG00000253953|Q9UN71-2|PCDHGB4;ENSG00000253953|ENST00000519479|PCDHGB4;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5	nc|ENSG00000253953|Q9UN71-2|PCDHGB4	nc|ENSG00000253953|Q9UN71-2|PCDHGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.2049255371094	3	372.204528	1113.59175	0.7763	0.00028894	0.27738	0.00010324	1.0537	0.00039218	372.20465504955604	26.797	0.36531	26.797	26.688	27.053	0					16	7	3	0	0	0	0.7005	1	9524	9524		15.333	0	1	1544100			37168	8004	25473	25563	37626	37626					0.039502712037119636
SLQEVTIHEK	10	Unmodified	_SLQEVTIHEK_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000489177.1_1_2:112630836-112638411:-|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF;ENST00000467878.1_1_2:112638162-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.3193969726562	2	592.319502	1182.62445	0.12658	7.4974E-05	0.20679	0.00012249	0.33337	0.00019746	592.3197193501863	24.246	0.088743	24.246	24.187	24.275	0					5	3	2	0	0	0	0.16365	1	7134	7134		84.31	29.227	1	66517			37169	5037	25474	25564	37627	37627					0.04044478326568424
SLQEVTIHEK	10	Unmodified	_SLQEVTIHEK_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000489177.1_1_2:112630836-112638411:-|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF;ENST00000467878.1_1_2:112638162-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.2152099609375	3	395.215427	1182.62445	0.90249	0.00035668	-1.1861	-0.00046877	-0.28362	-0.00011209	395.2149021602702	24.493	0.17708	24.493	24.45	24.627	0					11	4	3	0	0	0	0.58189	1	8265	8265		48.602	9.8875	1	571080			37170	5037	25474	25564	37628	37628					0.04044478326568424
SLQEVTIHEK	10	Unmodified	_SLQEVTIHEK_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000489177.1_1_2:112630836-112638411:-|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF;ENST00000467878.1_1_2:112638162-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2151794433594	3	395.215427	1182.62445	-0.65053	-0.0002571	0.12421	4.9089E-05	-0.52632	-0.00020801	395.215324756819	24.438	0.21756	24.438	24.33	24.547	0					6	4	2	0	0	0	0.54861	1	8441	8441		52.167	11.087	1	418090			37171	5037	25474	25564	37629	37629					0.04044478326568424
SLQFHVIKK	9	Unmodified	_SLQFHVIKK_					0	0	0			REV__CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	REV__CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2767944335938	2	550.334759	1098.65496	0.19037	0.00010477	0.69549	0.00038275	0.88587	0.00048752	550.3351764143684	21.543	0.21766	21.543	21.441	21.658	0					8	4	3	0	0	0	0.48623	1	7129	7129		34.173	2.6427	1	138000	+		37172	12430	25475	25565	37630	37630					0.10958301502273571
SLQGFPSEK	9	Unmodified	_SLQGFPSEK_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2560729980469	2	496.756007	991.497461	0.76424	0.00037964	2.1587	0.0010723	2.9229	0.001452	496.75763913157357	34.866	1.2902	34.866	34.568	35.858	0					108	36	7	0	0	0	0.30841	1	13433	13433		49.536	10.283	1	62168000			37173	1187	25476	25566	37631	37631					0.0013717717223471482
SLQGGLPLL	9	Unmodified	_SLQGGLPLL_					0	0	0		ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.2747802734375	2	449.273835	896.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.673	1	33.673	33.173	34.173	0								0	0	0	0.18645	1	11844	11844		52.937	1.6012	1				37174	8054	25477	25567	37632	37632					0.08071259419898524
SLQGPSLKPP	10	Unmodified	_SLQGPSLKPP_					0	0	0			REV__nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1	REV__nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.297607421875	2	512.295299	1022.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.931	1	40.931	40.431	41.431	0								0	0	0	0.3998	1	16247	16247		19.104	0	1		+		37175	21145	25478	25568	37633	37633					0.06566029477323809
SLQHLRLQ	8	Unmodified	_SLQHLRLQ_					0	0	0			REV__ENST00000466105.5_1_10:86211989-86232805:+|nuORF	REV__ENST00000466105.5_1_10:86211989-86232805:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.5318298339844	3	332.197931	993.571963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.059	1	14.059	13.559	14.559	0								0	0	0	1.7419	1	2840	2840		35.618	0	1		+		37176	19417	25479	25569	37634	37634					0.07491984774276261
SLQIKRELA	9	Unmodified	_SLQIKRELA_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.3232421875	2	529.321848	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.152	1	26.152	25.652	26.652	0								0	0	0	0.19847	1	8379	8379		51.193	0	1				37177	6705	25480	25570	37635	37635					0.10309407260001535
SLQKFSSLPA	10	Unmodified	_SLQKFSSLPA_					0	0	0		TMEM132B|p.Q99Rfs*5|2|0.35|ENSG00000139364|chr12:125349690-125349690|C/-|frameshift_variant;TMEM132B|p.F483Lfs*2|1|0.26|ENSG00000139364|chr12:125644098-125644098|T/-|frameshift_variant;nc|ENSG00000139364|Q14DG7-2|TMEM132B;nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B	TMEM132B|p.Q99Rfs*5|2|0.35|ENSG00000139364|chr12:125349690-125349690|C/-|frameshift_variant	TMEM132B|p.Q99Rfs*5|2|0.35|ENSG00000139364|chr12:125349690-125349690|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3025512695312	2	539.300581	1076.58661	3.4238	0.0018465	0.073675	3.9733E-05	3.4975	0.0018862	539.3007069868944	16.022	0.21902	16.022	15.964	16.183	0					8	4	3	0	0	0	0.19797	1	4365	4365		79.713	14.247	1	1055700			37178	4323	25481	25571	37636	37636					0.05138012131783398
SLQKPSKNY	9	Unmodified	_SLQKPSKNY_					0	0	0			REV__nc|ENSG00000213096|O75437-2|ZNF254	REV__nc|ENSG00000213096|O75437-2|ZNF254	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7930297851562	2	532.790381	1063.56621	1.7229	0.00091795	-1.0675	-0.00056877	0.65537	0.00034918	532.7898903976533	24.839	0.76199	24.839	24.545	25.307	0					45	15	5	0	0	0	0.13267	1	8644	8644		71.877	10.906	1	5698100	+		37179	17556	25482	25572	37637	37637					0.036968414719467546
SLQKPSKNY	9	Unmodified	_SLQKPSKNY_					0	0	0			REV__nc|ENSG00000213096|O75437-2|ZNF254	REV__nc|ENSG00000213096|O75437-2|ZNF254	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.79296875	2	532.790381	1063.56621	1.7628	0.00093919	-1.0614	-0.00056553	0.70134	0.00037367	532.78978142692	24.808	0.75131	24.808	24.513	25.264	0					33	15	4	0	0	0	0.20551	1	8504	8504		60.972	0	1	8831000	+		37180	17556	25482	25572	37638	37638					0.036968414719467546
SLQLIKRL	8	Unmodified	_SLQLIKRL_					0	0	0		ENSG00000010810|ENST00000354650|FYN;FYN|p.D506Gfs*3|1|0.19|ENSG00000010810|chr6:111661838-111661839|-/T|frameshift_variant;ENST00000495935.1_1_6:112021235-112021421:-|nuORF	ENSG00000010810|ENST00000354650|FYN	ENSG00000010810|ENST00000354650|FYN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.2185363769531	3	324.218443	969.633501	0.53458	0.00017332	-0.69407	-0.00022503	-0.15948	-5.1708E-05	324.2181846067985	23.129	0.63079	23.129	22.633	23.263	0					30	15	6	0	0	0	0.72381	1	7604	7604		32.812	0	1	3226800			37181	1041	25483	25573	37639	37639					0.14746916473552574
SLQLLNVV	8	Unmodified	_SLQLLNVV_					0	0	0			REV__ENST00000524792.5_1_11:108158320-108236232:+|nuORF	REV__ENST00000524792.5_1_11:108158320-108236232:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2735595703125	2	443.273835	884.533118	-0.49776	-0.00022065	0.015481	6.8624E-06	-0.48228	-0.00021378	443.27378346589074	36.94	0.25656	36.94	36.829	37.086	0					6	5	2	0	0	0	0.35045	1	14408	14408		76.774	0	1	231350	+		37182	12247	25484	25574	37640	37640					0.08623259419891838
SLQLRGLVVL	10	Unmodified	_SLQLRGLVVL_					0	0	0		nc|ENSG00000164494|Q86YH6-2|PDSS2;ENSG00000164494|ENST00000369037|PDSS2	nc|ENSG00000164494|Q86YH6-2|PDSS2	nc|ENSG00000164494|Q86YH6-2|PDSS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.5729064941406	3	366.572886	1096.69683	3.1594	0.0011581	-3.4905	-0.0012795	-0.33113	-0.00012138	366.5716436659364	14.634	0.2689	14.634	14.575	14.844	0					7	5	2	0	0	0	0.65051	1	3700	3700		28.081	2.0181	1	499080			37183	5698	25485	25575	37641	37641					0.15234857190785078
SLQLSGGAV	9	Unmodified	_SLQLSGGAV_					0	0	0			REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.2322692871094	2	416.232168	830.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.856	1	21.856	21.356	22.356	0								0	0	0	0.23445	1	7181	7181		45.972	0	1		+		37184	19887	25486	25576	37642	37642					0.027775229720418793
SLQLSLQLQR	10	Unmodified	_SLQLSLQLQR_					0	0	0			REV__GPRIN3|p.Q380Rfs*61|1|0.42|ENSG00000185477|chr4:89248973-89248973|G/-|frameshift_variant	REV__GPRIN3|p.Q380Rfs*61|1|0.42|ENSG00000185477|chr4:89248973-89248973|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.9045715332031	3	395.903183	1184.68772	3.1708	0.0012553	0.2786	0.0001103	3.4494	0.0013656	395.90325051518334	31.345	0.40851	31.345	31.241	31.65	0					22	8	4	0	0	0	0.33468	1	11699	11699		63.426	5.1802	1	2442200	+		37185	20703	25487	25577	37643	37643					0.10276463834452443
SLQMMKYWANF	11	Unmodified	_SLQMMKYWANF_					0	0	0		nc|ENSG00000172824|Q5XG92-4|CES4A;ENST00000535543.5_1_16:67034893-67043042:+|nuORF;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A;ENST00000544478.1_1_16:67040601-67043042:+|nuORF;ENST00000543561.1_1_16:67040205-67043042:+|nuORF	nc|ENSG00000172824|Q5XG92-4|CES4A	nc|ENSG00000172824|Q5XG92-4|CES4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	709.8275146484375	2	709.833408	1417.65226	0.24375	0.00017302	-3.9996	-0.0028391	-3.7559	-0.0026661	710.3318341747646	37.037	0.1149	37.037	36.991	37.106	0					10	6	2	0	0	0	0.76233	1	12143	12143		21.686	1.689	1	37367			37186	6387	25488	25578	37644	37644					-0.03985658009196413
SLQNLKVGAQ	10	Unmodified	_SLQNLKVGAQ_					0	0	0		nc|ENSG00000142606|Q495T6-3|MMEL1;ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-2|MMEL1	nc|ENSG00000142606|Q495T6-3|MMEL1	nc|ENSG00000142606|Q495T6-3|MMEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.30517578125	2	529.303655	1056.59276	0.066952	3.5438E-05	0.41533	0.00021984	0.48229	0.00025528	529.8053503055409	16.695	0.14462	16.695	16.606	16.751	0					13	6	3	0	0	0	0.64162	1	4072	4072		29.17	1.0886	1	72604			37187	4500	25489	25579	37645	37645					0.0667253036326656
SLQPLEHGVAA	11	Unmodified	_SLQPLEHGVAA_					0	0	0		nc|ENSG00000128923|Q8NBR6-2|MINDY2;ENSG00000128923|ENST00000559228|MINDY2	nc|ENSG00000128923|Q8NBR6-2|MINDY2	nc|ENSG00000128923|Q8NBR6-2|MINDY2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.3014526367188	2	561.301113	1120.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.431	1	26.431	25.931	26.931	0								0	0	0	0.32997	1	9459	9459		47.96	10.148	1				37188	3571	25490	25580	37646	37646					0.032202265006844755
SLQPSISQK	9	Unmodified	_SLQPSISQK_					0	0	0		ENSG00000163961|ENST00000318037|RNF168;RNF168|p.V562G|1|0.28|ENSG00000163961|chr3:196471850-196471850|A/C|missense_variant	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2769470214844	2	494.277106	986.53966	-0.75237	-0.00037188	0.35095	0.00017347	-0.40142	-0.00019841	494.2773246518662	23.737	0.1672	23.737	23.629	23.796	0					6	3	2	0	0	0	0.27123	1	8230	8230		53.089	3.6474	1	406190			37189	5634	25491	25581	37647	37647					0.04585152580625618
SLQPSTKM	8	Unmodified	_SLQPSTKM_					0	0	0		ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.2322998046875	2	446.233853	890.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.578	1	40.578	40.078	41.078	0								0	0	0	1.7419	1	13102	13102		44.117	3.3386	1				37190	9771	25492	25582	37648	37648					0.0035444975439986592
SLQQSCCCC	9	Unmodified	_SLQQSCCCC_					0	0	0			REV__ENST00000392795.7_1_17:62007703-62009599:-|nuORF	REV__ENST00000392795.7_1_17:62007703-62009599:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.6629943847656	2	487.663566	973.312578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.757	1	49.757	49.257	50.257	0								0	0	0	0.38123	1	17954	17954		16.473	0	1		+		37191	18835	25493	25583	37649	37649					-0.17514536557348492
SLQQSKVPF	9	Unmodified	_SLQQSKVPF_					0	0	0			REV__CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	REV__CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2871704101562	2	517.287474	1032.5604	0.024158	1.2497E-05	0.16058	8.3065E-05	0.18474	9.5562E-05	517.287541454037	26.379	0.16919	26.379	26.274	26.443	0					10	5	2	0	0	0	0.41958	1	8283	8283		40.058	2.2467	1	96666	+		37192	12505	25494	25584	37650	37650					0.04541742960282136
SLQQVLPL	8	Unmodified	_SLQQVLPL_					0	0	0		ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.273681640625	2	449.273835	896.533118	-0.46363	-0.0002083	0.2435	0.0001094	-0.22013	-9.8896E-05	449.2739407495241	26.711	0.27122	26.711	26.615	26.886	0					13	6	3	0	0	0	0.51384	1	9258	9258		58.782	0	1	342720			37193	5281	25495	25585	37651	37651					0.08071259419898524
SLQQVRQQLK	10	Unmodified	_SLQQVRQQLK_					0	0	0		STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.91021728515625	3	409.910449	1226.70952	0.054117	2.2183E-05	-0.67374	-0.00027617	-0.61962	-0.00025399	409.9102247873719	24.227	0.16319	24.227	24.163	24.326	0					7	3	3	0	0	0	0.65051	1	8463	8463		28.081	3.8497	1	189340			37194	2905	25496	25586	37652	37652					0.10523268583028766
SLQREGLSP	9	Unmodified	_SLQREGLSP_					0	0	0		PRSS53|p.V111Wfs*148|1|0.27|ENSG00000151006|chr16:31086810-31086810|C/-|frameshift_variant;ENST00000533518.5_3_16:31095113-31102425:-|nuORF;ENSG00000151006|ENST00000280606|PRSS53	PRSS53|p.V111Wfs*148|1|0.27|ENSG00000151006|chr16:31086810-31086810|C/-|frameshift_variant	PRSS53|p.V111Wfs*148|1|0.27|ENSG00000151006|chr16:31086810-31086810|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7667541503906	2	493.766906	985.519259	0.645	0.00031848	-0.22777	-0.00011247	0.41723	0.00020601	493.7669093117859	29.908	0.80009	29.908	29.801	30.601	0					43	17	5	0	0	0	0.19952	1	11111	11111		61.691	0	1	13029000			37195	4942	25497	25587	37653	37653					0.025919819208070294
SLQRSPAL	8	Unmodified	_SLQRSPAL_					0	0	0		SMTN|p.S239Afs*118|6|0.25|ENSG00000183963|chr22:31089936-31089936|C/-|frameshift_variant	SMTN|p.S239Afs*118|6|0.25|ENSG00000183963|chr22:31089936-31089936|C/-|frameshift_variant	SMTN|p.S239Afs*118|6|0.25|ENSG00000183963|chr22:31089936-31089936|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.2501525878906	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.859	1	27.859	27.359	28.359	0								0	0	0	1.7419	1	9169	9169		49.442	5.3247	1				37196	22428	25498	25588	37654	37654					0.051889181002820806
SLQSIIHKFL	10	Unmodified	_SLQSIIHKFL_					0	0	0		nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	nc|ENSG00000095787|Q9BTA9-5|WAC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.9043884277344	3	395.904524	1184.69174	0.58353	0.00023102	-0.88108	-0.00034882	-0.29755	-0.0001178	395.904143557896	31.386	0.36495	31.386	31.257	31.622	0					23	8	4	0	0	0	0.56063	1	11823	11823		38.754	1.2454	1	943790			37197	1908	25499	25589	37655	37655					0.1067855332819363
SLQTAAALL	9	Unmodified	_SLQTAAALL_					0	0	0			REV__PCOLCE2|p.I390Tfs*8|1|0.26|ENSG00000163710|chr3:142818414-142818414|A/-|frameshift_variant	REV__PCOLCE2|p.I390Tfs*8|1|0.26|ENSG00000163710|chr3:142818414-142818414|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.26324462890625	2	444.263468	886.512382	0.58787	0.00026117	-1.1417	-0.00050723	-0.55387	-0.00024606	444.2630559904707	34.575	0.17014	34.575	34.493	34.663	0					9	4	3	0	0	0	0.1115	1	12900	12900		76.774	0	1	239690	+		37198	15911	25500	25590	37656	37656					0.06458669040239329
SLQTTHPPL	9	Unmodified	_SLQTTHPPL_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2712097167969	2	497.271824	992.529095	-0.057839	-2.8762E-05	0.34571	0.00017191	0.28787	0.00014315	497.27201051201666	35.301	0.26283	35.301	35.197	35.459	0					16	13	2	0	0	0	0.60749	1	11554	11554		20.947	0.95016	1	68986			37199	9029	25501	25591	37657	37657					0.032531699261767244
SLQTTPSR	8	Unmodified	_SLQTTPSR_					0	0	0			REV__ENST00000525331.5_1_16:70026957-70027083:-|nuORF	REV__ENST00000525331.5_1_16:70026957-70027083:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.24072265625	2	445.240524	888.466495	-2.7739	-0.001235	2.4844	0.0011061	-0.28947	-0.00012888	445.2417438070693	20.048	0.13835	20.048	19.949	20.087	0					5	3	2	0	0	0	0.66989	1	5571	5571		37.812	2.1932	1	57572	+		37200	19986	25502	25592	37658	37658					0.017800238579980032
SLQVEAPKDF	10	Unmodified	_SLQVEAPKDF_					0	0	0		ENST00000561018.5_1_15:41067168-41068598:-|nuORF	ENST00000561018.5_1_15:41067168-41068598:-|nuORF	ENST00000561018.5_1_15:41067168-41068598:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.7994384765625	2	567.295496	1132.57644	3.4705	0.0019688	0.49001	0.00027798	3.9605	0.0022468	567.2957101177001	45.713	0.23206	45.713	45.613	45.845	0					14	9	2	0	0	0	0.46128	1	18299	18299		49.536	8.1094	1	102610			37201	10700	25503	25593	37659	37659					0.015454044065108974
SLQVGPDSAI	10	Unmodified	_SLQVGPDSAI_					0	0	0		CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant;ENSG00000071991|ENST00000262150|CDH19	CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant	CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.760498046875	2	493.761289	985.508025	-0.09309	-4.5964E-05	0.089421	4.4153E-05	-0.003669	-1.8116E-06	493.7613858514559	39.064	0.12691	39.064	38.995	39.122	0					11	7	2	0	0	0	0.67098	1	12708	12708		25.574	1.0549	1	53989			37202	449	25504	25594	37660	37660					0.014691598266608707
SLQVGPDSAI	10	Unmodified	_SLQVGPDSAI_					0	0	0		CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant;ENSG00000071991|ENST00000262150|CDH19	CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant	CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.760986328125	2	493.761289	985.508025	0.88077	0.00043489	-0.59457	-0.00029358	0.2862	0.00014131	493.760798304509	39.34	0.32473	39.34	39.202	39.526	0					12	7	2	0	0	0	0.28036	1	15526	15526		69.628	0.8408	1	338830			37203	449	25504	25594	37661	37661					0.014691598266608707
SLQVQLESI	9	Unmodified	_SLQVQLESI_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.78472900390625	2	508.784764	1015.55498	-0.10211	-5.1951E-05	0.013187	6.7093E-06	-0.088921	-4.5242E-05	508.7848034335211	33.326	0.3684	33.326	33.125	33.493	0					28	14	3	0	0	0	0.021961	1	10832	10832		118.74	9.3043	1	527570	+		37204	13022	25505	25595	37662	37662					0.04782019377796587
SLQVRLELA	9	Unmodified	_SLQVRLELA_					0	0	0		nc|ENSG00000177830|Q9BWS9-3|CHID1;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	nc|ENSG00000177830|Q9BWS9-3|CHID1	nc|ENSG00000177830|Q9BWS9-3|CHID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.5413513183594	3	343.541475	1027.60259	-0.061636	-2.1174E-05	-0.19387	-6.6604E-05	-0.25551	-8.7778E-05	343.54141962770495	22.524	0.28471	22.524	22.333	22.618	0					15	6	3	0	0	0	0.25716	1	6716	6716		54.776	1.8396	1	173970			37205	6688	25506	25596	37663	37663					0.0898971836866167
SLRAPQPVV	9	Unmodified	_SLRAPQPVV_					0	0	0			REV__ENST00000497857.5_1_2:218899814-218900102:+|nuORF	REV__ENST00000497857.5_1_2:218899814-218900102:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.86248779296875	3	322.862548	965.565815	0.5585	0.00018032	-0.65728	-0.00021221	-0.098776	-3.1891E-05	322.8622663875251	25.196	0.26864	25.196	25.073	25.341	0					9	5	2	0	0	0	0.50858	1	8916	8916		31.53	1.0262	1	156050	+		37206	19789	25507	25597	37664	37664					0.08165466542754984
SLRDVFASL	9	Unmodified	_SLRDVFASL_					0	0	0			REV__CLASP2|p.N188Kfs*2|1|0.21|ENSG00000163539|chr3:33619657-33619658|-/T|frameshift_variant	REV__CLASP2|p.N188Kfs*2|1|0.21|ENSG00000163539|chr3:33619657-33619658|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2795104980469	2	504.279649	1006.54475	-0.062613	-3.1574E-05	-0.62466	-0.000315	-0.68727	-0.00034658	504.27934713075865	37.179	0.79393	37.179	36.774	37.568	0					91	42	3	0	0	0	0.25716	1	12113	12113		54.776	3.4409	1	418590	+		37207	12507	25508	25598	37665	37665					0.04173456443231771
SLREGVTVI	9	Unmodified	_SLREGVTVI_					0	0	0		ENST00000273610.3_1_3:48599595-48600222:-|nuORF	ENST00000273610.3_1_3:48599595-48600222:-|nuORF	ENST00000273610.3_1_3:48599595-48600222:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	325.1941223144531	3	325.194075	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.911	1	21.911	21.411	22.411	0								0	0	0	0.32356	1	6368	6368		30.318	0	1				37208	8391	25509	25599	37666	37666					0.0730174296027144
SLRFGGQRYI	10	Unmodified	_SLRFGGQRYI_					0	0	0		ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.5570068359375	3	399.556007	1195.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.158	1	24.158	23.658	24.658	0								0	0	0	0.38879	1	7489	7489		33.922	3.3528	1				37209	3885	25510	25600	37667	37667					0.05619327865815649
SLRHGRAPL	9	Unmodified	_SLRHGRAPL_					0	0	0		ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.8004455566406	2	503.798875	1005.5832	2.9304	0.0014763	-3.557	-0.001792	-0.62657	-0.00031567	504.2973429965998	49.315	0.12219	49.315	49.288	49.411	0					9	6	2	0	0	0	0.5879	1	19516	19516		23.042	1.0826	1	40987			37210	5162	25511	25601	37668	37668					0.08062806868417738
SLRIMNAL	8	Unmodified	_SLRIMNAL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.S4936Y|1|0.08|ENSG00000131018|chr6:152329878-152329878|G/T|missense_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2663879394531	2	459.265487	916.516422	-0.44426	-0.00020403	3.8444	0.0017656	3.4002	0.0015616	459.2671397821109	33.076	0.24668	33.076	33.019	33.266	0					8	5	2	0	0	0	0.60719	1	12566	12566		47.916	1.9434	1	192570			37211	3690	25512	25602	37669	37669					0.05482435262274521
SLRIQPVL	8	Unmodified	_SLRIQPVL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.29473876953125	2	463.295102	924.575651	-0.47548	-0.00022029	0.23409	0.00010845	-0.24139	-0.00011183	463.295122163743	25.273	0.21895	25.273	25.162	25.381	0					6	4	2	0	0	0	0.74405	1	8842	8842		27.882	0	1	262750			37212	4825	25513	25603	37670	37670					0.1103465454812067
SLRRAHLE	8	Unmodified	_SLRRAHLE_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.85772705078125	3	327.857797	980.551562	0.52882	0.00017338	-0.54537	-0.0001788	-0.016552	-5.4266E-06	327.8576495622549	14.976	1.4684	14.976	14.807	16.275	0					76	35	3	0	0	0	0.76283	1	3737	3737		35.618	13.658	1	2907600			37213	3964	25514	25604	37671	37671					0.060508141144509864
SLRRRPAETL	10	Unmodified	_SLRRRPAETL_					0	0	0		HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7	HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant	HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.23876953125	3	400.238678	1197.6942	-0.61176	-0.00024485	0.34075	0.00013638	-0.271	-0.00010847	400.238971598567	26.813	0.82113	26.813	26.603	27.424	0					29	16	3	0	0	0	0.68194	1	9557	9557		24.232	2.5461	1	343810			37214	1323	25515	25605	37672	37672					0.10326401785846429
SLRRVAPR	8	Unmodified	_SLRRVAPR_					0	0	0		ENST00000377060.7_1_2:97499100-97499229:+|nuORF	ENST00000377060.7_1_2:97499100-97499229:+|nuORF	ENST00000377060.7_1_2:97499100-97499229:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.80267333984375	2	477.801417	953.588282	3.4674	0.0016567	-0.38382	-0.00018339	3.0836	0.0014733	477.8011660075007	34.576	0.30911	34.576	34.404	34.713	0					27	13	3	0	0	0	0.58597	1	11665	11665		51.335	10.763	1	176660			37215	9047	25516	25606	37673	37673					0.10963110731029246
SLRSLNRDMQ	10	Unmodified	_SLRSLNRDMQ_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	610.3148193359375	2	610.314229	1218.6139	-0.62656	-0.0003824	1.3263	0.00080945	0.69972	0.00042705	610.8166230892813	25.144	0.25902	25.144	25.03	25.289	0					11	8	2	0	0	0	0.69558	1	7800	7800		17.468	0	1	63944			37216	3892	25517	25607	37674	37674					0.013341724004703792
SLRSVKGLTF	10	Unmodified	_SLRSVKGLTF_					0	0	0			REV__ENST00000361972.8_1_10:7423786-7423873:-|nuORF	REV__ENST00000361972.8_1_10:7423786-7423873:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.88885498046875	3	369.888874	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.729	1	16.729	16.229	17.229	0								0	0	0	0.3963	1	4691	4691		31.634	8.1116	1		+		37217	18579	25518	25608	37675	37675					0.09573693777042536
SLRTFERT	8	Unmodified	_SLRTFERT_					0	0	0		ENST00000374206.3_1_9:116029682-116034747:-|nuORF	ENST00000374206.3_1_9:116029682-116034747:-|nuORF	ENST00000374206.3_1_9:116029682-116034747:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.27655029296875	2	505.274898	1008.53524	2.9345	0.0014827	0.7481	0.000378	3.6826	0.0018607	505.27530790380416	44.478	0.6658	44.478	44.371	45.036	0					59	27	4	0	0	0	0.46013	1	17800	17800		64.207	12.872	1	2681600			37218	9006	25519	25609	37676	37676					0.03131688157691315
SLRTVHRDL	9	Unmodified	_SLRTVHRDL_					0	0	0			REV__ENST00000215941.8_1_22:38227406-38227535:-|nuORF	REV__ENST00000215941.8_1_22:38227406-38227535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.2135925292969	3	366.21224	1095.61489	3.1584	0.0011567	0.55155	0.00020198	3.71	0.0013586	366.21228693337173	32.498	0.70855	32.498	32.338	33.046	0					27	14	4	0	0	0	0.55379	1	12272	12272		33.922	16.755	1	980870	+		37219	17876	25520	25610	37677	37677					0.07090754831688173
SLRVSLIGAG	10	Unmodified	_SLRVSLIGAG_					0	0	0		ENST00000567143.1_1_16:58438532-58438703:+|nuORF	ENST00000567143.1_1_16:58438532-58438703:+|nuORF	ENST00000567143.1_1_16:58438532-58438703:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7949523925781	2	486.795466	971.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.684	1	27.684	27.184	28.184	0								0	0	0	0.23331	1	8563	8563		60.118	0.18749	1				37220	10769	25521	25611	37678	37678					0.08945449197199196
SLRWSWLR	8	Unmodified	_SLRWSWLR_					0	0	0			REV__ENST00000600726.5_1_19:59081765-59082303:+|nuORF	REV__ENST00000600726.5_1_19:59081765-59082303:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.3069458007812	2	552.309075	1102.6036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.872	1	16.872	16.372	17.372	0								0	0	0	1.7419	1	4090	4090		21.96	3.6355	1		+		37221	20597	25522	25612	37679	37679					0.056399775281988695
SLSADKFQV	9	Unmodified	_SLSADKFQV_					0	0	0		ENST00000566843.1_1_15:75631960-75632245:+|nuORF;ENST00000565834.1_1_15:75631960-75632343:+|nuORF;ENSG00000140365|ENST00000267935|COMMD4	ENST00000566843.1_1_15:75631960-75632245:+|nuORF	ENST00000566843.1_1_15:75631960-75632245:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.76458740234375	2	497.763832	993.513111	-0.7144	-0.0003556	2.724	0.0013559	2.0096	0.0010003	497.76533860451724	34.012	0.16118	34.012	33.908	34.069	0					5	3	2	0	0	0	0.36892	1	13006	13006		44.377	1.5129	1	123720			37222	4379	25523	25613	37680	37680					0.01609463689283075
SLSAKRAAPVS	11	Unmodified	_SLSAKRAAPVS_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8168334960938	2	543.81693	1085.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.824	1	26.824	26.324	27.324	0								0	0	0	0.42265	1	8480	8480		29.17	15.033	1				37223	1442	25524	25614	37681	37681					0.07992219254606425
SLSARQSASF	10	Unmodified	_SLSARQSASF_					0	0	0		nc|ENSG00000167139|Q8IYX1-2|TBC1D21;ENSG00000167139|ENST00000300504|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2717895507812	2	527.269813	1052.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.92	1	30.92	30.42	31.42	0								0	0	0	0.35072	1	9896	9896		42.864	0.46813	1				37224	5972	25525	25615	37682	37682					0.0009108043248033937
SLSAVPYLV	9	Unmodified	_SLSAVPYLV_					0	0	0			REV__ENST00000488357.1_3_X:149924253-149933206:+|nuORF	REV__ENST00000488357.1_3_X:149924253-149933206:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2750244140625	2	474.773668	947.532783	0.61674	0.00029281	1.0379	0.00049277	1.6546	0.00078558	474.7738068253246	35.986	0.29541	35.986	35.853	36.148	0					28	9	4	0	0	0	0.43426	1	13954	13954		38.806	0	1	316520	+		37225	13097	25526	25616	37683	37683					0.05691839700034507
SLSELFSNK	9	Unmodified	_SLSELFSNK_					0	0	0		ENST00000570269.2_3_3:114047125-114047275:-|nuORF	ENST00000570269.2_3_3:114047125-114047275:-|nuORF	ENST00000570269.2_3_3:114047125-114047275:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2740478515625	2	512.769114	1023.52368	1.0729	0.00055017	-0.65481	-0.00033577	0.41814	0.00021441	512.7687516000652	18.262	0.6876	18.262	18.128	18.816	0					32	16	2	0	0	0	0.25716	1	5506	5506		54.776	10.66	1	99337000			37226	10795	25527	25617	37684	37684					0.012854463437065533
SLSELTTQK	9	Unmodified	_SLSELTTQK_					0	0	0		ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.783447265625	2	503.774396	1005.53424	1.185	0.00059697	2.0512	0.0010333	3.2362	0.0016303	503.77521034875673	21.579	0.11419	21.579	21.522	21.636	0					4	2	2	0	0	0	0.15163	1	7035	7035		67.494	5.8024	1	530110			37227	2564	25528	25618	37685	37685					0.031694289981260226
SLSESSPPK	9	Unmodified	_SLSESSPPK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2402038574219	2	466.24019	930.465826	0.43996	0.00020513	-1.3302	-0.00062017	-0.89019	-0.00041504	466.23956202206	19.006	0.27288	19.006	18.865	19.138	0					19	7	3	0	0	0	0.15163	1	5617	5617		67.494	5.3863	1	994130			37228	1248	25529	25619	37686	37686					-0.0021881558170662174
SLSESSPPK	9	Unmodified	_SLSESSPPK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2403259277344	2	466.24019	930.465826	0.66465	0.00030989	-1.1568	-0.00053937	-0.49219	-0.00022948	466.23967862033226	18.929	0.48789	18.929	18.595	19.083	0					20	10	3	0	0	0	0.15163	1	5885	5885		67.494	7.09	1	1177400			37229	1248	25529	25619	37687	37687					-0.0021881558170662174
SLSGNQLGAL	10	Unmodified	_SLSGNQLGAL_					0	0	0		ENST00000569830.1_1_15:42836283-42839734:-|nuORF;ENSG00000180979|ENST00000397130|LRRC57	ENST00000569830.1_1_15:42836283-42839734:-|nuORF	ENST00000569830.1_1_15:42836283-42839734:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.27484130859375	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.091	1	35.091	34.591	35.591	0								0	0	0	0.12773	1	13131	13131		74.255	0	1				37230	6828	25530	25620	37688	37688					0.027445795465155243
SLSGSEQNI	9	Unmodified	_SLSGSEQNI_					0	0	0			REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7238464355469	2	467.727446	933.44034	-2.1844	-0.0010217	-1.2491	-0.00058425	-3.4335	-0.001606	467.7269171298799	18.413	0.35271	18.413	18.225	18.578	0					25	10	4	0	0	0	0.24095	1	4753	4753		56.721	3.7844	1	338660	+		37231	12499	25531	25621	37689	37689					-0.029042901041407276
SLSGTISAGAL	11	Unmodified	_SLSGTISAGAL_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7687683105469	2	488.769114	975.523675	0.6146	0.0003004	-1.5307	-0.00074815	-0.91609	-0.00044775	488.7683823018656	24.003	0.56484	24.003	23.745	24.31	0					26	11	3	0	0	0	0.65907	1	8357	8357		31.53	0	1	1331300	+		37232	20925	25532	25622	37690	37690					0.03493446343702544
SLSIMLGKQ	9	Unmodified	_SLSIMLGKQ_					0	0	0			REV__nc|ENSG00000116748|P23109-2|AMPD1	REV__nc|ENSG00000116748|P23109-2|AMPD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7768859863281	2	488.778428	975.542302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.901	1	29.901	29.401	30.401	0								0	0	0	0.27025	1	10116	10116		40.778	3.6191	1		+		37233	14165	25533	25623	37691	37691					0.05355284713925812
SLSKTWCAQD	10	Unmodified	_SLSKTWCAQD_					0	0	0		ENSG00000188761|ENST00000393316|BCL2L15	ENSG00000188761|ENST00000393316|BCL2L15	ENSG00000188761|ENST00000393316|BCL2L15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7657470703125	2	569.763506	1137.51246	3.4353	0.0019573	-0.045358	-2.5843E-05	3.3899	0.0019315	569.7636218103967	19.867	0.6697	19.867	19.607	20.277	0					25	13	3	0	0	0	0.4758	1	6230	6230		47.96	3.5823	1	621240			37234	7271	25534	25624	37692	37692					-0.05079699022076056
SLSLFSGLR	9	Unmodified	_SLSLFSGLR_					0	0	0			REV__ENST00000465826.5_1_3:12628841-12633220:-|nuORF	REV__ENST00000465826.5_1_3:12628841-12633220:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.28131103515625	2	490.282192	978.549831	-1.2555	-0.00061553	0.8975	0.00044003	-0.35797	-0.0001755	490.28252799190136	38.132	0.17376	38.132	38.091	38.265	0					12	9	2	0	0	0	0.33044	1	12866	12866		47.657	3.5405	1	73102	+		37235	19413	25535	25625	37693	37693					0.05969760305845284
SLSLNIKTAEK	11	Unmodified	_SLSLNIKTAEK_					0	0	0			REV__ENSG00000101350|ENST00000375712|KIF3B	REV__ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.9029235839844	3	401.902961	1202.68705	0.66827	0.00026858	-0.77484	-0.00031141	-0.10657	-4.2829E-05	401.90262661438084	23.507	0.098448	23.507	23.456	23.554	0					4	2	2	0	0	0	0.60833	1	7802	7802		36.318	2.2311	1	92787	+		37236	13601	25536	25626	37694	37694					0.09381624394745813
SLSLPALVAL	10	Unmodified	_SLSLPALVAL_					0	0	0			REV__B2M|p.L12P|1|0.17|ENSG00000166710|chr15:44711581-44711581|T/C|missense_variant	REV__B2M|p.L12P|1|0.17|ENSG00000166710|chr15:44711581-44711581|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.310302734375	2	492.310418	982.606283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.598	1	44.598	44.098	45.098	0								0	0	0	0.3428	1	17346	17346		44.117	3.3386	1		+		37237	12267	25537	25627	37695	37695					0.11428388142508084
SLSLPHYG	8	Unmodified	_SLSLPHYG_					0	0	0		nc|ENSG00000100146|P56693|SOX10;ENSG00000100146|ENST00000396884|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2271423339844	2	437.226885	872.439217	-0.63369	-0.00027707	0.49707	0.00021733	-0.13663	-5.9736E-05	437.22712093884144	38.281	0.14922	38.281	38.217	38.367	0					13	7	2	0	0	0	0.74117	1	13683	13683		28.254	1.4582	1	109880			37238	1978	25538	25628	37696	37696					-0.0021045968237558554
SLSLQMFQS	9	Unmodified	_SLSLQMFQS_					0	0	0		CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant	CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant	CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7583618164062	2	520.757692	1039.50083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.181	1	32.181	31.681	32.681	0								0	0	0	0.3119	1	11790	11790		32.812	0	1				37239	567	25539	25629	37697	37697					-0.017338960454253538
SLSLSPGTHL	10	Unmodified	_SLSLSPGTHL_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000553080.1_1_16:716564-717586:+|nuORF;nc|ENSG00000161996|Q96KV7-7|WDR90;ENST00000547407.5_1_16:712941-717586:+|nuORF;ENST00000549024.5_1_16:711101-717586:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2794189453125	2	506.277106	1010.53966	2.936	0.0014864	0.7098	0.00035936	3.6458	0.0018458	506.27737630897695	42.818	0.41628	42.818	42.651	43.067	0					22	12	2	0	0	0	0.62235	1	17173	17173		31.53	7.0106	1	119620			37240	5434	25540	25630	37698	37698					0.034811525806162535
SLSLVEIYK	9	Unmodified	_SLSLVEIYK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.2063903808594	3	351.20598	1050.59611	1.4585	0.00051225	-0.4852	-0.0001704	0.97334	0.00034184	351.20589717350015	21.523	1.1667	21.523	21.271	22.438	0					50	23	4	0	0	0	0.5879	1	6965	6965		17.468	2.1349	1	1714700			37241	7354	25541	25631	37699	37699					0.07283780417265007
SLSLVQDKLQ	10	Unmodified	_SLSLVQDKLQ_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.5516662597656	3	377.552039	1129.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.91	1	38.91	38.41	39.41	0								0	0	0	0.41137	1	15282	15282		27.047	3.5246	1		+		37242	21091	25542	25632	37700	37700					0.07465666331927423
SLSPAALAPFL	11	Unmodified	_SLSPAALAPFL_					0	0	0		ENST00000451493.5_1_13:36920782-36920917:-|nuORF	ENST00000451493.5_1_13:36920782-36920917:-|nuORF	ENST00000451493.5_1_13:36920782-36920917:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.8768005371094	3	362.877975	1085.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.345	1	16.345	15.845	16.845	0								0	0	0	0.45674	1	3901	3901		10.104	0	1				37243	9651	25543	25633	37701	37701					0.07271486654190085
SLSPATITAG	10	Unmodified	_SLSPATITAG_					0	0	0			REV__CTNNB1|p.T41I|1|0.48|ENSG00000168036|chr3:41224634-41224634|C/T|missense_variant	REV__CTNNB1|p.T41I|1|0.48|ENSG00000168036|chr3:41224634-41224634|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2501220703125	2	459.250557	916.486562	0.72215	0.00033165	-1.6629	-0.00076367	-0.94072	-0.00043203	459.24994698174544	23.003	0.31865	23.003	22.944	23.263	0					12	6	3	0	0	0	0.37692	1	7879	7879		58.782	0.55203	1	652550	+		37244	12642	25544	25634	37702	37702					0.024977747979505693
SLSPVILIK	9	Unmodified	_SLSPVILIK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.3206481933594	2	485.320786	968.627018	-0.090848	-4.4091E-05	-0.027573	-1.3382E-05	-0.11842	-5.7472E-05	485.32071290779874	42.434	0.32337	42.434	42.325	42.649	0					26	16	3	0	0	0	0.22377	1	16642	16642		58.782	7.4465	1	177140			37245	2732	25545	25635	37703	37703					0.14144978522188012
SLSPWKLA	8	Unmodified	_SLSPWKLA_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.25836181640625	2	451.260728	900.506903	-2.6091	-0.0011774	-2.138	-0.0009648	-4.7471	-0.0021422	451.25970625543624	29.249	0.21962	29.249	29.159	29.379	0					8	5	2	0	0	0	0.37378	1	9825	9825		73.975	2.679	1	156020	+		37246	20607	25546	25636	37704	37704					0.052669902484126396
SLSREVTAL	9	Unmodified	_SLSREVTAL_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2791748046875	2	488.277106	974.53966	2.5894	0.0012644	-1.053	-0.00051414	1.5364	0.00075021	488.27568678195126	43.701	0.54715	43.701	43.485	44.032	0					29	17	3	0	0	0	0.33044	1	17486	17486		47.657	8.9037	1	164810	+		37247	17514	25547	25637	37705	37705					0.051371525806075624
SLSRMPPK	8	Unmodified	_SLSRMPPK_					0	0	0			REV__CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant	REV__CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2604675292969	2	458.257662	914.500772	4.3137	0.0019768	2.5013	0.0011462	6.815	0.003123	458.2585712818004	22.821	0.090977	22.821	22.776	22.867	0					6	3	2	0	0	0	0.63077	1	6771	6771		44.117	1.7207	1	61763	+		37248	12643	25548	25638	37706	37706					0.04010148745248898
SLSSGLLFR	9	Unmodified	_SLSSGLLFR_					0	0	0			REV__ENST00000464942.6_1_12:122709207-122709342:-|nuORF	REV__ENST00000464942.6_1_12:122709207-122709342:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2823181152344	2	490.282192	978.549831	0.8106	0.00039742	-0.6732	-0.00033006	0.1374	6.7366E-05	490.28208223016895	38.393	0.32561	38.393	38.269	38.595	0					14	11	2	0	0	0	0.18605	1	14595	14595		63.306	1.1989	1	158300	+		37249	19406	25549	25639	37707	37707					0.05969760305856653
SLSSGLSAL	9	Unmodified	_SLSSGLSAL_					0	0	0			REV__ENST00000530451.1_1_11:64889655-64897376:-|nuORF	REV__ENST00000530451.1_1_11:64889655-64897376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	417.7319030761719	2	417.732	833.449448	-0.30094	-0.00012571	0.18014	7.525E-05	-0.1208	-5.0463E-05	417.73197701820214	27.67	0.31826	27.67	27.56	27.878	0					13	6	3	0	0	0	0.087582	1	9918	9918		82.305	5.5309	1	903660	+		37250	20047	25550	25640	37708	37708					0.026061032521852212
SLSSLAFH	8	Unmodified	_SLSSLAFH_					0	0	0		nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.2259521484375	2	431.226885	860.439217	-0.25083	-0.00010817	-0.98364	-0.00042417	-1.2345	-0.00053234	431.2264076278331	18.864	0.25575	18.864	18.711	18.967	0					9	7	2	0	0	0	0.78216	1	4797	4797		8.8223	0	1	77871			37251	11485	25551	25641	37709	37709					0.0034154031761772785
SLSSLPAAAL	10	Unmodified	_SLSSLPAAAL_					0	0	0			REV__ENST00000345990.8_2_5:122847977-122881201:+|nuORF	REV__ENST00000345990.8_2_5:122847977-122881201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2691650390625	2	465.26875	928.522947	-1.1235	-0.00052275	1.3759	0.00064018	0.2524	0.00011743	465.2696054199978	27.739	0.16394	27.739	27.634	27.798	0					6	3	2	0	0	0	0.57532	1	10096	10096		37.159	1.5408	1	130200	+		37252	18482	25552	25642	37710	37710					0.055826516946467564
SLSSLTNI	8	Unmodified	_SLSSLTNI_					0	0	0		nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92;ENSG00000114656|ENST00000645291|CFAP92	nc|ENSG00000114656|Q9ULG3-2|CFAP92	nc|ENSG00000114656|Q9ULG3-2|CFAP92	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.7323303222656	2	417.732	833.449448	0.096753	4.0417E-05	0.79642	0.00033269	0.89317	0.00037311	417.73242013041914	27.514	0.17669	27.514	27.427	27.604	0					6	4	2	0	0	0	0.46905	1	9021	9021		63.306	0	1	87502			37253	2860	25553	25643	37711	37711					0.026061032521852212
SLSSPLNPK	9	Unmodified	_SLSSPLNPK_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7660217285156	2	471.766374	941.518196	0.19105	9.0129E-05	-0.77701	-0.00036657	-0.58596	-0.00027644	471.76591146438597	28.018	0.42882	28.018	27.792	28.221	0					17	10	2	0	0	0	0.13267	1	9865	9865		71.877	8.5712	1	187660			37254	277	25554	25644	37712	37712					0.04509767551905952
SLSSRARRPV	10	Unmodified	_SLSSRARRPV_					0	0	0		ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	376.8923645019531	3	376.891389	1127.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.026	1	24.026	23.526	24.526	0								0	0	0	0.4201	1	7295	7295		27.047	12.961	1				37255	10423	25555	25645	37713	37713					0.09361846097317539
SLSSTTRS	8	Unmodified	_SLSSTTRS_					0	0	0		ENST00000308964.7_1_19:56159479-56159569:+|nuORF	ENST00000308964.7_1_19:56159479-56159569:+|nuORF	ENST00000308964.7_1_19:56159479-56159569:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.7158508300781	2	419.716882	837.41921	-0.88884	-0.00037306	-1.0562	-0.00044329	-1.945	-0.00081635	419.71643787087385	39.431	0.27298	39.431	39.308	39.581	0					16	10	2	0	0	0	0.7887	1	14991	14991		12.959	12.959	1	198150			37256	8535	25556	25646	37714	37714					-0.006002554129963755
SLSTPLPCLH	10	Unmodified	_SLSTPLPCLH_					0	0	0			REV__ENST00000487483.6_1_19:46886892-46890886:+|nuORF	REV__ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2833862304688	2	534.281334	1066.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.965	1	19.965	19.465	20.465	0								0	0	0	0.40862	1	5500	5500		27.882	3.3631	1		+		37257	19673	25557	25647	37715	37715					0.017503832255670204
SLSTVLLGLH	10	Unmodified	_SLSTVLLGLH_					0	0	0		ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ZFYVE26|p.P1734Lfs*10|1|0.08|ENSG00000072121|chr14:67775880-67775880|G/-|frameshift_variant	ENST00000554523.5_1_14:68228796-68282710:-|nuORF	ENST00000554523.5_1_14:68228796-68282710:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.309326171875	2	520.310949	1038.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.506	1	37.506	37.006	38.006	0								0	0	0	0.40002	1	14223	14223		30.504	0.18592	1				37258	1483	25558	25648	37716	37716					0.08958602511415847
SLSVDEVVP	9	Unmodified	_SLSVDEVVP_					0	0	0			REV__VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	REV__VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.25372314453125	2	472.75039	943.486227	2.4238	0.0011459	2.4856	0.0011751	4.9095	0.002321	472.751864545005	24.777	0.75061	24.777	24.496	25.247	0					47	15	4	0	0	0	0.18605	1	8729	8729		63.306	3.0123	1	2254100	+		37259	13922	25559	25649	37717	37717					0.012223550780959158
SLSVPIIIK	9	Unmodified	_SLSVPIIIK_					0	0	0		CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant;nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1;ENST00000573209.1_1_17:7350776-7358776:+|nuORF	CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant	CHRNB1|p.Q341Lfs*49|1|0.23|ENSG00000170175|chr17:7454497-7454498|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.3208312988281	2	485.320786	968.627018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.262	1	42.262	41.762	42.762	0								0	0	0	0.15451	1	14785	14785		58.782	0	1				37260	538	25560	25650	37718	37718					0.14144978522188012
SLSVSHTSF	9	Unmodified	_SLSVSHTSF_					0	0	0			REV__ENSG00000214787|ENST00000651255|MS4A4E	REV__ENSG00000214787|ENST00000651255|MS4A4E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7400207519531	2	482.740357	963.46616	-0.60919	-0.00029408	-0.62891	-0.0003036	-1.2381	-0.00059769	482.74019573684666	28.367	0.26505	28.367	28.261	28.526	0					7	5	2	0	0	0	0.35045	1	10278	10278		45.952	1.8352	1	327380	+		37261	17586	25561	25651	37719	37719					-0.017033958618412726
SLSVSLWGL	9	Unmodified	_SLSVSLWGL_					0	0	0			REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2734375	2	481.271293	960.528032	3.467	0.0016686	0.47826	0.00023017	3.9453	0.0018987	481.2715077537249	36.894	0.26423	36.894	36.805	37.069	0					22	14	2	0	0	0	0.35045	1	12486	12486		45.952	0	1	84953	+		37262	20298	25562	25652	37720	37720					0.04618955557270965
SLSVSVGRVK	10	Unmodified	_SLSVSVGRVK_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-5|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-5|KIRREL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.3140258789062	2	516.314023	1030.61349	-0.040844	-2.1088E-05	0.30303	0.00015646	0.26219	0.00013537	516.3141953875327	21.67	0.15584	21.67	21.6	21.756	0					9	4	3	0	0	0	0.27406	1	6268	6268		58.23	5.2932	1	448580	+		37263	14463	25563	25653	37721	37721					0.0994112074295117
SLSVTAAMK	9	Unmodified	_SLSVTAAMK_					0	0	0		ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2492370605469	2	454.249503	906.484453	0.70886	0.000322	-1.5399	-0.00069949	-0.83102	-0.00037749	454.24891390565085	32.546	0.25639	32.546	32.424	32.68	0					13	6	3	0	0	0	0.30951	1	11968	11968		49.442	3.4693	1	490400			37264	8635	25564	25654	37722	37722					0.02747022788491904
SLTALKLGLA	10	Unmodified	_SLTALKLGLA_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.8153076171875	2	493.815867	985.617182	-0.62528	-0.00030877	0.020867	1.0304E-05	-0.60441	-0.00029847	493.81579714134597	36.241	0.61161	36.241	36.132	36.744	0					31	12	4	0	0	0	0.61002	1	14246	14246		35.152	9.578	1	3216500	+		37265	16379	25565	25655	37723	37723					0.12379790516797584
SLTASINKLE	10	Unmodified	_SLTASINKLE_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.2030944824219	3	359.20464	1074.59209	-2.0348	-0.0007309	-0.30769	-0.00011052	-2.3425	-0.00084143	359.2044394671593	37.353	0.28504	37.353	37.243	37.528	0					22	14	2	0	0	0	0.61238	1	13359	13359		32.751	1.1163	1	129980			37266	7607	25566	25656	37724	37724					0.05777690923582668
SLTDSKQGK	9	Unmodified	_SLTDSKQGK_					0	0	0		nc|ENSG00000289716|Q6ZNB5-2|XNDC1N;ENSG00000254469|ENST00000679412|XNDC1N;ENST00000528511.6_2_11:71595487-71639632:-|nuORF	nc|ENSG00000289716|Q6ZNB5-2|XNDC1N	nc|ENSG00000289716|Q6ZNB5-2|XNDC1N	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2593688964844	2	482.258914	962.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.471	1	14.471	13.971	14.971	0								0	0	0	0.22284	1	3607	3607		47.657	1.6851	1				37267	8007	25567	25657	37725	37725					0.020522756839113754
SLTEPLQTY	9	Unmodified	_SLTEPLQTY_					0	0	0			REV__NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant	REV__NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.26904296875	2	526.268947	1050.52334	1.7661	0.00092947	-1.0079	-0.00053041	0.75828	0.00039906	526.2682153806131	38.351	0.14486	38.351	38.248	38.393	0					10	5	2	0	0	0	0.42902	1	15028	15028		39.253	3.6345	1	161390	+		37268	17150	25568	25658	37726	37726					0.00010026623863268469
SLTFAHNRVA	10	Unmodified	_SLTFAHNRVA_					0	0	0			REV__PLCD3|p.D416N|1|0.12|ENSG00000161714|chr17:45118008-45118008|C/T|missense_variant	REV__PLCD3|p.D416N|1|0.12|ENSG00000161714|chr17:45118008-45118008|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.5366516113281	3	372.536724	1114.58834	0.37519	0.00013977	-0.60689	-0.00022609	-0.2317	-8.6317E-05	372.53647994007275	24.861	0.33402	24.861	24.726	25.06	0					14	8	2	0	0	0	0.4758	1	8427	8427		47.96	5.6214	1	2236200	+		37269	21383	25569	25659	37727	37727					0.03563065940375054
SLTFALPAAL	10	Unmodified	_SLTFALPAAL_					0	0	0			REV__ENST00000381103.6_1_5:61602143-61604167:+|nuORF	REV__ENST00000381103.6_1_5:61602143-61604167:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2952880859375	2	502.294768	1002.57498	2.925	0.0014692	-2.1327	-0.0010713	0.79229	0.00039796	502.29387045674207	42.781	0.18834	42.781	42.651	42.839	0					10	5	2	0	0	0	0.64178	1	17063	17063		29.15	2.3535	1	58979	+		37270	18779	25570	25660	37728	37728					0.07379815108413368
SLTGQSSLY	9	Unmodified	_SLTGQSSLY_					0	0	0			REV__ENST00000496559.6_1_3:66430689-66456253:-|nuORF;REV__LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant;REV__ENSG00000198799|ENST00000361127|LRIG2	REV__ENSG00000198799|ENST00000361127|LRIG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.79022216796875	2	478.24019	954.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.517	1	20.517	20.017	21.017	0								0	0	0	0.35507	1	6662	6662		24.203	0	1		+		37271	19773;15243;17433	25571	25661	37729	37729					-0.013228155817159859
SLTGSLRSSL	10	Unmodified	_SLTGSLRSSL_					0	0	0			REV__SNX21|p.P101Hfs*35|1|0.14|ENSG00000124104|chr20:45834966-45834966|C/-|frameshift_variant	REV__SNX21|p.P101Hfs*35|1|0.14|ENSG00000124104|chr20:45834966-45834966|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.787109375	2	510.787838	1019.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.776	1	21.776	21.276	22.276	0								0	0	0	0.33707	1	6973	6973		25.574	3.6142	1		+		37272	14375	25572	25662	37730	37730					0.05212537609315859
SLTGSTQVGK	10	Unmodified	_SLTGSTQVGK_					0	0	0		ALDH7A1|p.F272L|1|0.11|ENSG00000164904|chr5:126568316-126568316|A/G|missense_variant	ALDH7A1|p.F272L|1|0.11|ENSG00000164904|chr5:126568316-126568316|A/G|missense_variant	ALDH7A1|p.F272L|1|0.11|ENSG00000164904|chr5:126568316-126568316|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	326.5135192871094	3	326.513585	976.518924	0.63841	0.00020845	-0.83347	-0.00027214	-0.19506	-6.3689E-05	326.51334792410097	13.081	0.12182	13.081	13.006	13.127	0					8	3	3	0	0	0	0.56931	1	2890	2890		28.577	0	1	2139900			37273	115	25573	25663	37731	37731					0.02972562200966422
SLTKAPIHSF	10	Unmodified	_SLTKAPIHSF_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	367.5400390625	3	367.541475	1099.60259	-0.9956	-0.00036592	-2.5463	-0.00093589	-3.5419	-0.0013018	367.54028924981907	26.379	0.16919	26.379	26.274	26.443	0					12	5	3	0	0	0	0.536	1	8284	8284		41.427	5.109	1	146610	+		37274	14214	25574	25664	37732	37732					0.056777183686335775
SLTKTGQQK	9	Unmodified	_SLTKTGQQK_					0	0	0			REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3	REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.85748291015625	3	330.857463	989.550559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.286	1	14.286	13.786	14.786	0								0	0	0	0.3304	1	3447	3447		29.17	1.0886	1		+		37275	14289	25575	25665	37733	37733					0.055365549549037496
SLTLNANNIA	10	Unmodified	_SLTLNANNIA_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7801513671875	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.493	1	32.493	31.993	32.993	0								0	0	0	0.35072	1	11934	11934		42.864	3.6114	1		+		37276	22008	25576	25666	37734	37734					0.03188251092274186
SLTLNMLY	8	Oxidation (M)	_SLTLNM(Oxidation (M))LY_		SLTLNM(1)LY		SLTLNM(50)LY	0	0	1			REV__nc|ENSG00000163564|Q6K0P9-6|PYHIN1	REV__nc|ENSG00000163564|Q6K0P9-6|PYHIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.75091552734375	2	485.749336	969.484119	2.4992	0.001214	0.82745	0.00040193	3.3266	0.0016159	485.7497633711617	19.969	0.21795	19.969	19.859	20.077	0					7	4	2	0	0	0	0.59411	1	6275	6275		50.025	50.025	1	1992600	+		37277	21094	25577	25667	37735	37735		758			-0.0018439693135405832
SLTLRLKQK	9	Unmodified	_SLTLRLKQK_					0	0	0			REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.9046630859375	3	362.904636	1085.69208	-0.099873	-3.6244E-05	-0.1179	-4.2785E-05	-0.21777	-7.9029E-05	362.9045467251041	15.752	0.10824	15.752	15.693	15.801	0					7	4	2	0	0	0	0.22837	1	3592	3592		58.23	6.7022	1	138300	+		37278	19721	25578	25668	37736	37736					0.152659730480309
SLTLRLKQK	9	Unmodified	_SLTLRLKQK_					0	0	0			REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.90460205078125	3	362.904636	1085.69208	-2.0543	-0.00074552	3.0645	0.0011121	1.0102	0.00036659	362.90558549549723	15.756	0.083358	15.756	15.71	15.794	0					5	3	2	0	0	0	0.21263	1	3600	3600		60.118	3.3972	1	37593	+		37279	19721	25578	25668	37737	37737					0.152659730480309
SLTLVFQRQ	9	Unmodified	_SLTLVFQRQ_					0	0	0			REV__POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	REV__POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3148803710938	2	546.314023	1090.61349	0.33485	0.00018293	-0.40937	-0.00022365	-0.074523	-4.0713E-05	546.313703585964	31.02	1.8783	31.02	30.88	32.759	0					106	42	5	0	0	0	0.26904	1	12238	12238		53.351	3.9099	1	45109000	+		37280	13073	25579	25669	37738	37738					0.07181120742939129
SLTPGLGG	8	Unmodified	_SLTPGLGG_					0	0	0			REV__ENST00000303961.8_1_19:41313938-41314193:+|nuORF	REV__ENST00000303961.8_1_19:41313938-41314193:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.1963806152344	2	351.195054	700.375555	1.459	0.00051238	2.8787	0.001011	4.3377	0.0015234	351.19584142976487	27.247	0.57504	27.247	27.036	27.611	0					19	11	3	0	0	0	0.74117	1	9720	9720		28.254	0	1	550100	+		37281	18226	25580	25670	37739	37739					0.013381798805312428
SLTPQTRATHE	11	Unmodified	_SLTPQTRATHE_					0	0	0			REV__ENST00000482926.1_1_6:42018279-42030992:+|nuORF	REV__ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.2156982421875	3	414.214198	1239.62076	1.0343	0.00042844	1.1513	0.00047689	2.1857	0.00090533	414.21508864151826	24.579	0.39328	24.579	24.405	24.798	0					31	9	5	0	0	0	0.64323	1	8302	8302		33.039	4.4627	1	401110	+		37282	14920	25581	25671	37740	37740					0.010538085527059593
SLTQICIK	8	Unmodified	_SLTQICIK_					0	0	0		nc|ENSG00000174442|Q9H900-2|ZWILCH;ENSG00000174442|ENST00000307897|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.2596740722656	2	453.259871	904.505189	-0.34301	-0.00015547	-0.32193	-0.00014592	-0.66494	-0.00030139	453.2598144167923	27.264	0.2006	27.264	27.171	27.372	0					20	8	4	0	0	0	0.63077	1	8366	8366		44.117	0	1	285480			37283	6488	25582	25672	37741	37741					0.04911613168144413
SLTQNTSL	8	Unmodified	_SLTQNTSL_					0	0	0			REV__ENST00000489159.1_1_1:150530894-150532669:+|nuORF	REV__ENST00000489159.1_1_1:150530894-150532669:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	432.227294921875	2	432.227082	862.439611	-0.42739	-0.00018473	1.4493	0.00062644	1.0219	0.00044171	432.2276621824814	16.971	0.11277	16.971	16.93	17.043	0					5	3	2	0	0	0	0.58597	1	4143	4143		51.335	0	1	90056	+		37284	15189	25583	25673	37742	37742					0.0028891524681284864
SLTREGLAKI	10	Unmodified	_SLTREGLAKI_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.22119140625	3	363.220513	1086.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.204	1	29.204	28.704	29.704	0								0	0	0	0.4201	1	9195	9195		20.03	0.7678	1		+		37285	12216	25584	25674	37743	37743					0.09985389914436382
SLTRSAAP	8	Unmodified	_SLTRSAAP_					0	0	0			REV__ENST00000313056.9_1_17:80348217-80348325:-|nuORF	REV__ENST00000313056.9_1_17:80348217-80348325:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.2221374511719	2	401.72451	801.434466	0.94486	0.00037957	-3.365	-0.0013518	-2.4202	-0.00097225	401.7239497484539	19.704	0.26623	19.704	19.569	19.835	0					9	6	2	0	0	0	0.63077	1	5991	5991		44.117	6.9577	1	404610	+		37286	18280	25585	25675	37744	37744					0.025806561748481727
SLTSRAAP	8	Unmodified	_SLTSRAAP_					0	0	0		ENST00000519531.5_1_20:61904210-61914317:+|nuORF	ENST00000519531.5_1_20:61904210-61914317:+|nuORF	ENST00000519531.5_1_20:61904210-61914317:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.7242126464844	2	401.72451	801.434466	-1.3374	-0.00053726	1.3717	0.00055105	0.034326	1.379E-05	401.7249686880071	19.417	0.10999	19.417	19.382	19.492	0					5	3	2	0	0	0	0.58597	1	5260	5260		51.335	0	1	111150			37287	10289	25586	25676	37745	37745					0.025806561748481727
SLTSSWISF	9	Unmodified	_SLTSSWISF_					0	0	0			REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2586059570312	2	514.258382	1026.50221	1.4716	0.00075677	-0.10318	-5.3059E-05	1.3684	0.00070371	514.2584076863601	44.587	0.18507	44.587	44.483	44.668	0					12	7	2	0	0	0	0.45358	1	17858	17858		37.159	6.6555	1	53056	+		37288	19064	25587	25677	37746	37746					-0.009979386850091032
SLTTPVVSVA	10	Unmodified	_SLTTPVVSVA_					0	0	0		nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D	nc|ENSG00000116604|Q14814-6|MEF2D	nc|ENSG00000116604|Q14814-6|MEF2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.28167724609375	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.233	1	33.233	32.733	33.733	0								0	0	0	0.30913	1	11641	11641		49.442	1.7842	1				37289	2990	25588	25678	37747	37747					0.06178920866148019
SLTVSPIRV	9	Unmodified	_SLTVSPIRV_					0	0	0		ENST00000262919.9_1_20:3627575-3627716:+|nuORF	ENST00000262919.9_1_20:3627575-3627716:+|nuORF	ENST00000262919.9_1_20:3627575-3627716:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2978210449219	2	486.297842	970.581131	2.5203	0.0012256	-3.7744	-0.0018355	-1.2541	-0.00060987	486.29657246469253	37.635	0.35218	37.635	37.484	37.837	0					14	7	3	0	0	0	0.42902	1	14718	14718		39.253	1.4413	1	977590			37290	8311	25589	25679	37748	37748					0.09466333339958055
SLTWGLGGPSQ	11	Unmodified	_SLTWGLGGPSQ_					0	0	0		ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	ENSG00000214562|ENST00000381697|NUTM2D	ENSG00000214562|ENST00000381697|NUTM2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.18817138671875	3	368.189101	1101.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.442	1	40.442	39.942	40.942	0								0	0	0	0.40864	1	16057	16057		35.178	1.2566	1				37291	7044	25590	25680	37749	37749					-0.0012374890768569458
SLTYNIAVV	9	Unmodified	_SLTYNIAVV_					0	0	0		ENST00000340648.5_1_21:45114371-45114962:+|nuORF	ENST00000340648.5_1_21:45114371-45114962:+|nuORF	ENST00000340648.5_1_21:45114371-45114962:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.77813720703125	2	490.276575	978.538597	-0.54037	-0.00026493	0.56863	0.00027879	0.028258	1.3854E-05	490.27721028899555	32.98	0.11338	32.98	32.875	32.988	0					4	2	2	0	0	0	0.17854	1	12476	12476		64.207	0.901	1	138920			37292	8731	25591	25681	37750	37750					0.048469382116991255
SLVAMHAK	8	Unmodified	_SLVAMHAK_					0	0	0			REV__nc|ENSG00000152409|Q8N9B5-2|JMY	REV__nc|ENSG00000152409|Q8N9B5-2|JMY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7398986816406	2	428.739105	855.463658	-0.23253	-9.9693E-05	1.5102	0.00064748	1.2777	0.00054778	428.7397073831207	26.044	0.18782	26.044	25.905	26.093	0					7	4	2	0	0	0	0.78142	1	8343	8343		23.042	3.6825	1	39826	+		37293	15506	25592	25682	37751	37751					0.030144771994855546
SLVAVVRAP	9	Unmodified	_SLVAVVRAP_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.28717041015625	2	456.287277	910.560001	0.032072	1.4634E-05	-0.6619	-0.00030202	-0.62983	-0.00028738	456.2870217279739	32.154	0.31905	32.154	31.986	32.305	0					20	14	2	0	0	0	0.61124	1	10354	10354		18.324	0.95945	1	101400	+		37294	15849	25593	25683	37752	37752					0.10114368031076992
SLVDFSTNNQ	10	Unmodified	_SLVDFSTNNQ_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000573175.1_1_17:4451225-4453465:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.764404296875	2	562.76456	1123.51457	0.93228	0.00052466	-0.84114	-0.00047336	0.091149	5.1295E-05	562.7640356894816	21.491	0.19413	21.491	21.39	21.584	0					11	4	3	0	0	0	0.49411	1	6252	6252		45.972	1.5951	1	176570			37295	3781	25594	25684	37753	37753					-0.04224947012630764
SLVDFSTNNQ	10	Unmodified	_SLVDFSTNNQ_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000573175.1_1_17:4451225-4453465:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7647705078125	2	562.76456	1123.51457	-0.99112	-0.00055777	1.5128	0.00085134	0.52167	0.00029358	562.7655401730502	21.474	0.23361	21.474	21.374	21.608	0					11	5	3	0	0	0	0.34667	1	6241	6241		62.107	5.3864	1	291760			37296	3781	25594	25684	37754	37754					-0.04224947012630764
SLVEFSCGL	9	Unmodified	_SLVEFSCGL_					0	0	0			REV__SLC9C1|p.R66Kfs*29|1|0.36|ENSG00000172139|chr3:112278850-112278851|-/T|frameshift_variant	REV__SLC9C1|p.R66Kfs*29|1|0.36|ENSG00000172139|chr3:112278850-112278851|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.7353515625	2	477.733686	953.452819	2.2286	0.0010647	1.2169	0.00058135	3.4454	0.001646	477.7342797534028	24.556	0.16481	24.556	24.447	24.611	0					6	3	2	0	0	0	0.23186	1	8498	8498		57.811	2.3071	1	791710	+		37297	16450	25595	25685	37755	37755					-0.02576969965457465
SLVFDLHE	8	Unmodified	_SLVFDLHE_					0	0	0		ENST00000531443.5_1_8:107696561-107715155:+|nuORF	ENST00000531443.5_1_8:107696561-107715155:+|nuORF	ENST00000531443.5_1_8:107696561-107715155:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2467346191406	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.067	1	27.067	26.567	27.567	0								0	0	0	1.7419	1	8584	8584		57.811	1.0902	1				37298	10436	25596	25686	37756	37756					-0.0049020785647826415
SLVGLPPSK	9	Unmodified	_SLVGLPPSK_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2D|p.G5182Afs*61|1|0.57|ENSG00000167548|chr12:49026421-49026421|C/-|frameshift_variant;KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant;KMT2D|p.T4629Pfs*11|1|0.27|ENSG00000167548|chr12:49030395-49030395|G/-|frameshift_variant;KMT2D|p.S4327Afs*57|1|0.44|ENSG00000167548|chr12:49031727-49031727|G/-|frameshift_variant;KMT2D|p.Q4156Nfs*5|1|0.15|ENSG00000167548|chr12:49032239-49032239|G/-|frameshift_variant;KMT2D|p.A3552Sfs*4|1|0.51|ENSG00000167548|chr12:49034153-49034154|-/T|frameshift_variant;KMT2D|p.P3102Lfs*17|1|0.26|ENSG00000167548|chr12:49038051-49038051|G/-|frameshift_variant;KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;KMT2D|p.Y2907Tfs*3|1|0.26|ENSG00000167548|chr12:49038637-49038637|A/-|frameshift_variant	nc|ENSG00000167548|O14686-3|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.27362060546875	2	449.273835	896.533118	-0.30323	-0.00013623	0.023042	1.0352E-05	-0.28019	-0.00012588	449.2737204121701	26.446	0.10258	26.446	26.38	26.483	0					6	3	2	0	0	0	0.24095	1	8043	8043		56.721	10.769	1	74925			37299	6000	25597	25687	37757	37757					0.08071259419898524
SLVKPNQK	8	Unmodified	_SLVKPNQK_					0	0	0		LTR33_dup6907|chr13:43062072-43062490:-|1.5020271884645031|0.1937030753486897|2.95|477.0|25|2|anti-sense	LTR33_dup6907|chr13:43062072-43062490:-|1.5020271884645031|0.1937030753486897|2.95|477.0|25|2|anti-sense	LTR33_dup6907|chr13:43062072-43062490:-|1.5020271884645031|0.1937030753486897|2.95|477.0|25|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.27667236328125	2	457.276909	912.539266	-1.122	-0.00051307	-0.1932	-8.8346E-05	-1.3152	-0.00060142	457.27705610550265	32.409	0.13078	32.409	32.333	32.464	0					6	5	2	0	0	0	0.77246	1	10814	10814		24.203	0	1	54498			37300	11339	25598	25688	37758	37758					0.07949777651424483
SLVLELSDS	9	Unmodified	_SLVLELSDS_					0	0	0		ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.75567626953125	2	481.755672	961.496792	-0.1053	-5.0729E-05	0.26914	0.00012966	0.16384	7.8932E-05	481.75577165491296	21.683	0.11718	21.683	21.625	21.742	0					4	2	2	0	0	0	0.43426	1	7241	7241		38.806	38.806	1	175820			37301	2127	25599	25689	37759	37759					0.01450337732535445
SLVLLVSN	8	Unmodified	_SLVLLVSN_					0	0	0			REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant	REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.7605285644531	2	422.760561	843.506569	-1.1815	-0.0004995	0.74741	0.00031597	-0.4341	-0.00018352	422.7607706525048	27.535	0.15191	27.535	27.468	27.62	0					8	5	2	0	0	0	0.63077	1	8786	8786		44.117	0	1	78816	+		37302	12734	25600	25690	37760	37760					0.07855570528568023
SLVLSVQPGS	10	Unmodified	_SLVLSVQPGS_					0	0	0			REV__nc|ENSG00000204936|Q8N6Q3-3|CD177	REV__nc|ENSG00000204936|Q8N6Q3-3|CD177	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7787170410156	2	493.779482	985.544411	-0.085364	-4.2151E-05	-0.023807	-1.1756E-05	-0.10917	-5.3906E-05	493.7795242082496	26.825	0.75954	26.825	26.623	27.383	0					45	27	3	0	0	0	0.56931	1	8152	8152		37.812	4.2959	1	83456	+		37303	12381	25601	25691	37761	37761					0.05106036723384477
SLVMMTTAK	9	Unmodified	_SLVMMTTAK_					0	0	0			REV__nc|ENSG00000137513|Q96I59-2|NARS2	REV__nc|ENSG00000137513|Q96I59-2|NARS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2575988769531	2	491.259013	980.503474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.125	1	26.125	25.625	26.625	0								0	0	0	0.3368	1	8175	8175		27.882	0	1		+		37304	14926	25602	25692	37762	37762					0.012442360878935688
SLVNEVRAL	9	Unmodified	_SLVNEVRAL_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7928771972656	2	500.792924	999.571294	0.39874	0.00019969	-0.14317	-7.1701E-05	0.25556	0.00012799	500.79287512275454	25.607	0.12518	25.607	25.56	25.686	0					7	4	2	0	0	0	0.21263	1	7734	7734		60.118	7.1816	1	84585	+		37305	15002	25603	25693	37763	37763					0.07149145334562945
SLVPLIASLQ	10	Unmodified	_SLVPLIASLQ_					0	0	0			REV__ENSG00000204510|ENST00000697200|PRAMEF7	REV__ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.8212280273438	2	520.82115	1039.62775	1.7051	0.00088805	-1.426	-0.0007427	0.27909	0.00014535	520.8204875601297	33.824	0.67136	33.824	33.713	34.385	0					19	16	2	0	0	0	0.55603	1	12993	12993		39.253	11.371	1	180230	+		37306	16879	25604	25694	37764	37764					0.10951773171223067
SLVRMINTY	9	Unmodified	_SLVRMINTY_					0	0	0			REV__nc|ENSG00000143627|P30613-2|PKLR	REV__nc|ENSG00000143627|P30613-2|PKLR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7942504882812	2	548.794609	1095.57467	0.3801	0.0002086	-2.5771	-0.0014143	-2.197	-0.0012057	548.7929538418002	31.853	0.34559	31.853	31.732	32.077	0					23	13	3	0	0	0	0.48389	1	10579	10579		34.173	2.6427	1	89875	+		37307	15201	25605	25695	37765	37765					0.03070072116929623
SLVSEKKSA	9	Unmodified	_SLVSEKKSA_					0	0	0		ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.7802429199219	2	474.771657	947.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.935	1	19.935	19.435	20.435	0								0	0	0	0.28666	1	5487	5487		37.812	2.1932	1				37308	3296	25606	25696	37766	37766					0.05289750206327426
SLVSPQAKPA	10	Unmodified	_SLVSPQAKPA_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.1935729980469	3	333.194075	996.560395	0.53997	0.00017991	-0.52501	-0.00017493	0.014959	4.9844E-06	333.1938518782018	30.928	0.2369	30.928	30.841	31.077	0					16	5	4	0	0	0	0.54861	1	11603	11603		40.058	2.2467	1	1425400			37309	10263	25607	25697	37767	37767					0.061977429602734446
SLVSQFYL	8	Unmodified	_SLVSQFYL_					0	0	0		ENST00000433566.8_1_8:21827771-21829435:+|nuORF	ENST00000433566.8_1_8:21827771-21829435:+|nuORF	ENST00000433566.8_1_8:21827771-21829435:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.75872802734375	2	478.758018	955.501483	3.4529	0.0016531	-3.626	-0.001736	-0.17304	-8.2844E-05	478.75622477967175	40.443	0.16065	40.443	40.369	40.529	0					11	9	2	0	0	0	0.65148	1	13537	13537		40.778	1.7567	1	33285			37310	9511	25608	25698	37768	37768					0.02195266665944473
SLVSTLNII	9	Unmodified	_SLVSTLNII_					0	0	0			REV__nc|ENSG00000076242|P40692-2|MLH1	REV__nc|ENSG00000076242|P40692-2|MLH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7937927246094	2	480.292225	958.569897	0.032464	1.5592E-05	0.44386	0.00021318	0.47632	0.00022877	480.2923381792368	37.689	0.17476	37.689	37.602	37.777	0					15	10	2	0	0	0	0.12239	1	12329	12329		74.255	2.9593	1	81843	+		37311	13246	25609	25699	37769	37769					0.08895511245816579
SLVSVACCSL	10	Carbamidomethyl (C)	_SLVSVAC(Carbamidomethyl (C))CSL_	SLVSVAC(0.809)C(0.191)SL		SLVSVAC(6.3)C(-6.3)SL		0	1	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.8367004394531	3	346.836794	1037.48855	3.0311	0.0010513	-3.768	-0.0013069	-0.73684	-0.00025556	346.8356647262538	26.426	0.42239	26.426	26.265	26.688	0					18	8	3	0	0	0	0.50287	1	9349	9349		45.022	7.4223	2	1186700			37312	11686	25610	25700	37770	37770	461				-0.028692557801150542
SLVSVLKVIE	10	Unmodified	_SLVSVLKVIE_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8966369628906	3	362.897147	1085.66961	0.1043	3.7851E-05	-2.4663	-0.00089502	-2.362	-0.00085717	362.89630606601736	17.019	0.09466	17.019	16.978	17.073	0					5	3	2	0	0	0	0.65051	1	3993	3993		28.081	3.5623	1	52540	+		37313	12992	25611	25701	37771	37771					0.1302032885976132
SLVSYPYKK	9	Unmodified	_SLVSYPYKK_					0	0	0			REV__nc|ENSG00000182944|Q01844-4|EWSR1	REV__nc|ENSG00000182944|Q01844-4|EWSR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.806396484375	2	542.8055	1083.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.955	1	13.955	13.455	14.455	0								0	0	0	0.39312	1	2947	2947		12.959	1.4482	1		+		37314	21152	25612	25702	37772	37772					0.05799200137130356
SLVTACKV	8	Carbamidomethyl (C)	_SLVTAC(Carbamidomethyl (C))KV_	SLVTAC(1)KV		SLVTAC(88)KV		0	1	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.243896484375	2	439.244221	876.473888	-0.37031	-0.00016265	-0.20334	-8.9317E-05	-0.57365	-0.00025197	439.24417197581545	28.203	0.22152	28.203	28.109	28.33	0					12	5	4	0	0	0	0.28427	1	9947	9947		87.754	10.908	1	850400	+		37315	14579	25613	25703	37773	37773	543				0.030710401340684257
SLVTFGVVGL	10	Unmodified	_SLVTFGVVGL_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.29461669921875	2	496.294768	990.574983	0.74151	0.00036801	-0.58002	-0.00028786	0.16149	8.0148E-05	496.29436223809535	36.142	0.12592	36.142	36.052	36.178	0					9	4	3	0	0	0	0.44469	1	14064	14064		51.335	3.4199	1	178580	+		37316	16466	25614	25704	37774	37774					0.07931815108440787
SLVTVSWGAP	10	Unmodified	_SLVTVSWGAP_					0	0	0		PVRIG|p.G79Afs*245|1|0.24|ENSG00000213413|chr7:100220225-100220225|G/-|frameshift_variant	PVRIG|p.G79Afs*245|1|0.24|ENSG00000213413|chr7:100220225-100220225|G/-|frameshift_variant	PVRIG|p.G79Afs*245|1|0.24|ENSG00000213413|chr7:100220225-100220225|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7739562988281	2	508.7742	1015.53385	0.91148	0.00046374	-0.93685	-0.00047664	-0.02537	-1.2907E-05	508.77371527402175	35.696	0.19347	35.696	35.569	35.763	0					8	5	2	0	0	0	0.54197	1	13375	13375		40.778	7.2626	1	259610			37317	11989	25615	25705	37775	37775					0.02670054068948957
SLVVLICSIPL	11	Unmodified	_SLVVLICSIPL_					0	0	0		ENST00000513635.1_1_5:40681836-40685490:+|nuORF;ENSG00000171522|ENST00000302472|PTGER4	ENST00000513635.1_1_5:40681836-40685490:+|nuORF	ENST00000513635.1_1_5:40681836-40685490:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.23992919921875	3	386.238516	1155.69372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.439	1	17.439	16.939	17.939	0								0	0	0	0.42444	1	5179	5179		31.634	9.0546	1				37318	6303	25616	25706	37776	37776					0.12209846021778503
SLVVSGAPTI	10	Unmodified	_SLVVSGAPTI_					0	0	0			REV__nc|ENSG00000112964|P10912-4|GHR	REV__nc|ENSG00000112964|P10912-4|GHR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.27618408203125	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.457	1	30.457	29.957	30.957	0								0	0	0	0.32041	1	10006	10006		47.657	0	1		+		37319	14019	25617	25707	37777	37777					0.06502938211713172
SLVVTSVME	9	Unmodified	_SLVVTSVME_					0	0	0			REV__ENST00000398675.7_1_12:42480111-42480195:-|nuORF	REV__ENST00000398675.7_1_12:42480111-42480195:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2507629394531	2	482.754618	963.494683	-0.10105	-4.8784E-05	-3.3597	-0.0016219	-3.4607	-0.0016707	482.75329376101035	26.142	0.61064	26.142	25.983	26.594	0					29	12	3	0	0	0	0.45358	1	9475	9475		37.159	5.2042	1	919230	+		37320	18927	25618	25708	37778	37778					0.011475857230720976
SLWALAVLQ	9	Unmodified	_SLWALAVLQ_					0	0	0			REV__OR2B11|p.P267Lfs*18|1|0.36|ENSG00000177535|chr1:247451183-247451183|G/-|frameshift_variant	REV__OR2B11|p.P267Lfs*18|1|0.36|ENSG00000177535|chr1:247451183-247451183|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7930603027344	2	500.794935	999.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.888	1	25.888	25.388	26.388	0								0	0	0	0.14517	1	9078	9078		60.972	2.742	1		+		37321	16698	25619	25709	37779	37779					0.07551234828292763
SLWQQVPSRC	10	Unmodified	_SLWQQVPSRC_					0	0	0		ENST00000526955.1_1_11:125281302-125301285:+|nuORF	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.2998657226562	2	602.30059	1202.58663	-0.29087	-0.00017519	-0.65997	-0.0003975	-0.95084	-0.00057269	602.3000134519094	33.082	0.29039	33.082	32.969	33.26	0					20	8	4	0	0	0	0.5155	1	12197	12197		43.651	10.838	1	423750			37322	10382	25620	25710	37780	37780					-0.006563111398918409
SLWRPFPA	8	Unmodified	_SLWRPFPA_					0	0	0		ENST00000474441.1_1_3:88107164-88107287:-|nuORF;ENST00000309534.10_1_3:88105133-88107287:-|nuORF	ENST00000474441.1_1_3:88107164-88107287:-|nuORF	ENST00000474441.1_1_3:88107164-88107287:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2679443359375	2	487.266345	972.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.549	1	25.549	25.049	26.049	0								0	0	0	1.7419	1	8139	8139		30.504	1.3541	1				37323	8540	25621	25711	37781	37781					0.03077812342553443
SLYAGSNN	8	Unmodified	_SLYAGSNN_					0	0	0		ENST00000573740.1_1_17:4542344-4544955:-|nuORF;nc|ENSG00000161905|P16050-2|ALOX15;ENSG00000161905|ENST00000293761|ALOX15	ENST00000573740.1_1_17:4542344-4544955:-|nuORF	ENST00000573740.1_1_17:4542344-4544955:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.1902160644531	2	413.1905	824.366446	1.025	0.0004235	-2.8195	-0.001165	-1.7945	-0.00074149	413.1889763467347	19.787	0.36369	19.787	19.522	19.886	0					14	8	3	0	0	0	0.73426	1	6046	6046		29.15	2.3535	1	495080			37324	5429	25622	25712	37782	37782					-0.05276213475815439
SLYDKQQRGK	10	Unmodified	_SLYDKQQRGK_					0	0	0		ENSG00000129007|ENST00000467889|CALML4;nc|ENSG00000129007|Q96GE6|CALML4	ENSG00000129007|ENST00000467889|CALML4	ENSG00000129007|ENST00000467889|CALML4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.2226257324219	3	408.222805	1221.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.468	1	15.468	14.968	15.968	0								0	0	0	0.33707	1	4234	4234		45.022	17.378	1				37325	3576	25623	25713	37783	37783					0.044627027949900366
SLYDKQQRGK	10	Unmodified	_SLYDKQQRGK_					0	0	0		ENSG00000129007|ENST00000467889|CALML4;nc|ENSG00000129007|Q96GE6|CALML4	ENSG00000129007|ENST00000467889|CALML4	ENSG00000129007|ENST00000467889|CALML4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	611.8305053710938	2	611.830569	1221.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.282	1	15.282	14.782	15.782	0								0	0	0	0.38467	1	3392	3392		23.523	2.5758	1				37326	3576	25623	25713	37784	37784					0.044627027949900366
SLYEARNRTL	10	Unmodified	_SLYEARNRTL_					0	0	0		BCHE|p.T343Nfs*8|1|0.44|ENSG00000114200|chr3:165830006-165830007|-/T|frameshift_variant;BCHE|p.Y528Ifs*2|1|0.26|ENSG00000114200|chr3:165786247-165786247|A/-|frameshift_variant;ENSG00000114200|ENST00000264381|BCHE	BCHE|p.T343Nfs*8|1|0.44|ENSG00000114200|chr3:165830006-165830007|-/T|frameshift_variant	BCHE|p.T343Nfs*8|1|0.44|ENSG00000114200|chr3:165830006-165830007|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	408.22235107421875	3	408.222805	1221.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.237	1	15.237	14.737	15.737	0								0	0	0	0.3963	1	3432	3432		31.634	2.4642	1				37327	286	25624	25714	37785	37785					0.04462702795012774
SLYFSAGLL	9	Unmodified	_SLYFSAGLL_					0	0	0		nc|ENSG00000070269|Q9NX78-2|TMEM260;ENST00000557657.5_1_14:57046563-57079004:+|nuORF;ENST00000557626.5_1_14:57046563-57082746:+|nuORF;nc|ENSG00000070269|Q9NX78-3|TMEM260;ENSG00000070269|ENST00000261556|TMEM260	nc|ENSG00000070269|Q9NX78-2|TMEM260	nc|ENSG00000070269|Q9NX78-2|TMEM260	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7635498046875	2	485.765843	969.517133	-0.56126	-0.00027264	-3.1034	-0.0015075	-3.6647	-0.0017802	485.76400782806087	37.618	0.50574	37.618	37.315	37.821	0					21	10	4	0	0	0	0.35045	1	14711	14711		45.952	10.751	1	823620			37328	1446	25625	25715	37786	37786					0.031155531829995198
SLYKEGHSK	9	Unmodified	_SLYKEGHSK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7748413085938	2	524.774731	1047.53491	1.8471	0.00096932	-1.1046	-0.00057966	0.74252	0.00038966	524.7739915949848	14.58	0.090808	14.58	14.536	14.627	0					4	2	2	0	0	0	0.095583	1	3596	3596		80.455	20.336	1	113070			37329	2680	25626	25716	37787	37787					0.013042684378660852
SLYKEGHSK	9	Unmodified	_SLYKEGHSK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.18511962890625	3	350.185579	1047.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.582	1	14.582	14.082	15.082	0								0	0	0	0.34845	1	3814	3814		40.058	17.479	1				37330	2680	25626	25716	37788	37788					0.013042684378660852
SLYLFLFKE	9	Unmodified	_SLYLFLFKE_					0	0	0			REV__ENSG00000269526|ENST00000602168|ERVV-1	REV__ENSG00000269526|ENST00000602168|ERVV-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.32470703125	2	580.323525	1158.6325	-0.035786	-2.0767E-05	2.5821	0.0014985	2.5464	0.0014777	580.3248699095576	16.937	0.17193	16.937	16.846	17.018	0					7	4	2	0	0	0	0.55967	1	4696	4696		25.574	0.12388	1	755500	+		37331	17800	25627	25717	37789	37789					0.05952657313991949
SLYLVISNK	9	Unmodified	_SLYLVISNK_					0	0	0		ENST00000525815.5_2_11:107729816-107729852:-|nuORF	ENST00000525815.5_2_11:107729816-107729852:-|nuORF	ENST00000525815.5_2_11:107729816-107729852:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.8054809570312	2	518.8055	1035.59645	0.055973	2.9039E-05	1.1457	0.00059439	1.2017	0.00062343	518.8061240635249	40.045	0.12398	40.045	39.98	40.104	0					7	4	2	0	0	0	0.35021	1	15253	15253		45.972	3.5761	1	60336			37332	10365	25628	25718	37790	37790					0.08007200137149084
SLYQVAPF	8	Unmodified	_SLYQVAPF_					0	0	0			REV__ENST00000573807.5_1_17:7216558-7216813:-|nuORF	REV__ENST00000573807.5_1_17:7216558-7216813:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.74456787109375	2	462.744911	923.475269	0.78249	0.00036209	2.5077	0.0011604	3.2902	0.0015225	462.74686673881047	37.26	0.89566	37.26	36.812	37.708	0					27	18	2	0	0	0	0.59411	1	14588	14588		50.025	4.0726	1	282110	+		37333	14664	25629	25719	37791	37791					0.010469974944726346
SLYSACSMQS	10	Unmodified	_SLYSACSMQS_					0	0	0		nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-4|GRB10;ENSG00000106070|ENST00000401949|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.224609375	2	538.722992	1075.43143	0.85463	0.00046041	0.37715	0.00020318	1.2318	0.00066359	538.7231772302079	19.561	0.37727	19.561	19.425	19.802	0					27	11	3	0	0	0	0.63224	1	5170	5170		30.318	6.115	1	576990			37334	2420	25630	25720	37792	37792					-0.10326723056482479
SLYSVPEGQSK	11	Unmodified	_SLYSVPEGQSK_					0	0	0		nc|ENSG00000184831|Q9BUR5-2|APOO;ENSG00000184831|ENST00000379226|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.8056030273438	2	597.803685	1193.59282	1.1798	0.0007053	0.58755	0.00035124	1.7674	0.0010565	597.8039011476659	28.966	0.39906	28.966	28.812	29.211	0					24	8	5	0	0	0	0.18862	1	10686	10686		75.652	6.0246	1	533670			37335	7037	25631	25721	37793	37793					0.003764855726103633
SLYSVPEGQSK	11	Unmodified	_SLYSVPEGQSK_					0	0	0		nc|ENSG00000184831|Q9BUR5-2|APOO;ENSG00000184831|ENST00000379226|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.804443359375	2	597.803685	1193.59282	-1.8428	-0.0011016	2.8608	0.0017102	1.018	0.00060858	597.805396403459	28.784	0.25726	28.784	28.665	28.923	0					15	6	3	0	0	0	0.44025	1	9613	9613		48.602	9.8479	1	72441			37336	7037	25631	25721	37794	37794					0.003764855726103633
SLYVGLIAGY	10	Unmodified	_SLYVGLIAGY_					0	0	0			REV__OR7A5|p.M284Cfs*2|1|0.15|ENSG00000188269|chr19:14827393-14827393|G/-|frameshift_variant	REV__OR7A5|p.M284Cfs*2|1|0.15|ENSG00000188269|chr19:14827393-14827393|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2908935546875	2	528.292225	1054.5699	1.6292	0.00086067	-1.3225	-0.00069866	0.30666	0.000162	528.2900229178256	40.927	0.28229	40.927	40.748	41.03	0					12	4	3	0	0	0	0.42631	1	16262	16262		53.351	0.41475	1	157060	+		37337	17162	25632	25722	37795	37795					0.044795112458359654
SLYWLSTQK	9	Unmodified	_SLYWLSTQK_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B;TAF1B|p.K508_N509insLFL|1|0.05|ENSG00000115750|chr2:9919778-9919779|-/ATTGTTTCT|inframe_insertion	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.3013916015625	2	563.300581	1124.58661	3.4703	0.0019548	-1.9018	-0.0010713	1.5685	0.00088352	563.2995509763692	41.881	0.17682	41.881	41.804	41.981	0					13	5	3	0	0	0	0.052435	1	16684	16684		109.48	43.049	1	278950			37338	2933	25633	25723	37796	37796					0.029300121317419325
SMALNEKQI	9	Oxidation (M)	_SM(Oxidation (M))ALNEKQI_		SM(1)ALNEKQI		SM(62)ALNEKQI	0	0	1		ENSG00000198873|ENST00000392870|GRK5;GRK5|p.G227W|1|0.16|ENSG00000198873|chr10:119431468-119431468|G/T|missense_variant	ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2686767578125	2	525.268424	1048.5223	1.7754	0.00093256	-0.36678	-0.00019266	1.4086	0.0007399	525.2683700269992	40.071	0.15483	40.071	39.992	40.146	0					8	5	2	0	0	0	0.19952	1	15794	15794		61.691	17.314	1	104150			37339	7630	25634	25724	37797	37797		307			-2.5110166916419985E-05
SMAPVGRQ	8	Oxidation (M)	_SM(Oxidation (M))APVGRQ_		SM(1)APVGRQ		SM(80)APVGRQ	0	0	1			REV__SYNRG|p.N610Tfs*3|2|0.33|ENSG00000275066|chr17:37553894-37553894|T/-|frameshift_variant	REV__SYNRG|p.N610Tfs*3|2|0.33|ENSG00000275066|chr17:37553894-37553894|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2158203125	2	431.215995	860.417436	0.94769	0.00040866	-2.1629	-0.00093266	-1.2152	-0.000524	431.2153236798302	17.868	0.26555	17.868	17.666	17.931	0					14	5	4	0	0	0	0.32408	1	5230	5230		79.939	14.136	1	431870	+		37340	17827	25635	25725	37798	37798		665			-0.018355877025896916
SMASAGNWAER	11	Unmodified	_SMASAGNWAER_					0	0	0			REV__ENST00000487544.1_1_X:43703754-43741674:-|nuORF	REV__ENST00000487544.1_1_X:43703754-43741674:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.2639770507812	2	590.264204	1178.51386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.995	1	22.995	22.495	23.495	0								0	0	0	0.44027	1	6848	6848		28.081	2.5074	1		+		37341	19679	25636	25726	37799	37799					-0.0682606493332969
SMDGHPSR	8	Oxidation (M)	_SM(Oxidation (M))DGHPSR_		SM(1)DGHPSR		SM(53)DGHPSR	0	0	1		AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant;ENSG00000134698|ENST00000373210|AGO4	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.6930236816406	2	451.692884	901.371214	0.66216	0.00029909	-0.36242	-0.0001637	0.29974	0.00013539	451.6927001816732	20.443	1.2857	20.443	20.339	21.624	0					66	29	5	0	0	0	0.5676	1	6350	6350		53.351	14.545	1	4974400			37342	95	25637	25727	37800	37800		6			-0.08341652604690353
SMEGRAPQCL	10	Unmodified	_SMEGRAPQCL_					0	0	0		ENST00000379446.9_1_6:11232788-11232833:-|nuORF	ENST00000379446.9_1_6:11232788-11232833:-|nuORF	ENST00000379446.9_1_6:11232788-11232833:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7561645507812	2	546.252251	1090.48995	1.1252	0.00061463	2.2591	0.001234	3.3842	0.0018486	546.7547191763589	34.954	0.21776	34.954	34.818	35.035	0					11	7	2	0	0	0	0.64162	1	12394	12394		29.17	1.2878	1	87234			37343	9081	25638	25728	37801	37801					-0.051676216913392636
SMFTAILKK	9	Unmodified	_SMFTAILKK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.8045654296875	2	519.804445	1037.59434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.37	1	37.37	36.87	37.87	0								0	0	0	0.0124	1	14605	14605		107.01	50.286	1				37344	7578	25639	25729	37802	37802					0.07704448127697106
SMFWVDAELG	10	Oxidation (M)	_SM(Oxidation (M))FWVDAELG_		SM(1)FWVDAELG		SM(49)FWVDAELG	0	0	1		ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.7610473632812	2	585.760432	1169.50631	0.5466	0.00032018	0.47338	0.00027729	1.02	0.00059747	585.7609481500144	14.833	0.23984	14.833	14.756	14.996	0					21	12	3	0	0	0	0.46215	1	3207	3207		49.442	7.0454	1	319150			37345	4097	25640	25730	37803	37803		167			-0.07166217253620744
SMGAVQQF	8	Unmodified	_SMGAVQQF_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2048645019531	2	434.205096	866.395638	0.69895	0.00030349	-1.1446	-0.000497	-0.44567	-0.00019351	434.20455932744	36.787	0.16225	36.787	36.713	36.875	0					7	4	2	0	0	0	0.24425	1	13896	13896		111.65	37.674	1	114950			37346	4239	25641	25731	37804	37804					-0.04290392451162006
SMGAVQQF	8	Unmodified	_SMGAVQQF_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.2056579589844	2	434.205096	866.395638	-0.4509	-0.00019578	1.2309	0.00053445	0.77997	0.00033867	434.20560582853085	36.78	0.1369	36.78	36.714	36.851	0					5	4	2	0	0	0	0.63077	1	14357	14357		44.117	6.9577	1	52267			37347	4239	25641	25731	37805	37805					-0.04290392451162006
SMGAVQQF	8	Unmodified	_SMGAVQQF_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.20501708984375	2	434.205096	866.395638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.76	1	36.76	36.26	37.26	0								0	0	0	1.7419	1	14314	14314		87.754	5.4493	1				37348	4239	25641	25731	37806	37806					-0.04290392451162006
SMISSVNVVR	10	Unmodified	_SMISSVNVVR_					0	0	0			REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.2982788085938	2	546.297516	1090.58048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.962	1	35.962	35.462	36.462	0								0	0	0	0.37702	1	12173	12173		32.812	6.1195	1		+		37349	15707	25642	25732	37807	37807					0.038811706285969194
SMKGSMVM	8	2 Oxidation (M)	_SM(Oxidation (M))KGSMVM(Oxidation (M))_		SM(1)KGSM(0.109)VM(0.891)		SM(44)KGSM(-9.1)VM(9.1)	0	0	2			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.6929626464844	2	451.692649	901.370745	0.71232	0.00032175	-0.035181	-1.5891E-05	0.67714	0.00030586	451.69264895523173	20.372	0.5692	20.372	20.212	20.781	0					36	11	4	0	0	0	0.60719	1	6577	6577		47.916	47.916	3	16124000	+		37350	21138	25643	25733	37808	37808		760;761			-0.08388531640400743
SMLKVLISF	9	Unmodified	_SMLKVLISF_					0	0	0			REV__ENST00000237281.4_1_6:146127357-146127429:-|nuORF	REV__ENST00000237281.4_1_6:146127357-146127429:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.3088989257812	2	519.306821	1036.59909	3.3565	0.0017431	0.75088	0.00038994	4.1074	0.002133	519.3071816578935	25.59	0.35613	25.59	25.481	25.837	0					14	5	4	0	0	0	0.28897	1	8989	8989		51.193	3.5354	1	2566800	+		37351	17924	25644	25734	37809	37809					0.08225332270444596
SMLNFLKK	8	Unmodified	_SMLNFLKK_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.52471923828125	3	327.524767	979.552473	0.55688	0.00018239	-0.81602	-0.00026727	-0.25915	-8.4877E-05	327.52454128370226	32.009	0.20336	32.009	31.897	32.101	0					9	5	2	0	0	0	0.64096	1	11076	11076		35.618	0	1	171360			37352	1753	25645	25735	37810	37810					0.06187892439152165
SMLPCEPLTL	10	Oxidation (M)	_SM(Oxidation (M))LPCEPLTL_		SM(1)LPCEPLTL		SM(61)LPCEPLTL	0	0	1			REV__ENST00000427635.6_1_10:69747892-69752485:-|nuORF	REV__ENST00000427635.6_1_10:69747892-69752485:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.2755737304688	2	560.27486	1118.53517	1.3344	0.00074761	-0.37633	-0.00021085	0.95803	0.00053676	560.2746180247461	22.747	0.56164	22.747	22.538	23.1	0					36	11	4	0	0	0	0.357	1	7572	7572		60.972	60.972	1	2785800	+		37353	15394	25646	25736	37811	37811		593			-0.01935815948831987
SMLPGSGSVPK	11	Unmodified	_SMLPGSGSVPK_					0	0	0		TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant	TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7816772460938	2	530.278792	1058.54303	-1.204	-0.00063847	2.3746	0.0012592	1.1706	0.00062073	530.2801326859507	28.27	0.30824	28.27	28.095	28.403	0					12	7	2	0	0	0	0.68382	1	9394	9394		29.17	1.0886	1	76746			37354	8111	25647	25737	37812	37812					0.016100793629675536
SMMDVDHQIAK	11	Unmodified	_SMMDVDHQIAK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000508451.1_1_5:10250422-10254994:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.5335998535156	3	425.533774	1273.57949	-0.38335	-0.00016313	0.045414	1.9325E-05	-0.33793	-0.0001438	425.5339689323766	28.762	0.16782	28.762	28.678	28.846	0					8	3	3	0	0	0	0.39337	1	10576	10576		52.167	22.616	1	201960			37355	4933	25648	25738	37813	37813					-0.04635411802610179
SMMKAVLKK	9	Unmodified	_SMMKAVLKK_					0	0	0		ENST00000317615.10_1_18:12720618-12724532:+|nuORF	ENST00000317615.10_1_18:12720618-12724532:+|nuORF	ENST00000317615.10_1_18:12720618-12724532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.8731384277344	3	345.873291	1034.59804	0.92738	0.00032075	-1.3223	-0.00045733	-0.39488	-0.00013658	345.87280900059943	19.946	0.11935	19.946	19.886	20.005	0					6	2	3	0	0	0	0.46194	1	6121	6121		51.528	0	1	182210			37356	8586	25649	25739	37814	37814					0.08212794629889686
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2472839355469	2	490.247492	978.48043	-0.12524	-6.1399E-05	0.59549	0.00029194	0.47025	0.00023054	490.2474314789374	21.101	0.15513	21.101	21.028	21.183	0					10	4	3	0	0	0	0.01776	1	5750	5750		125.68	35.312	1	851260			37357	6559	25650	25740	37815	37815					-0.00967066705209163
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2474060058594	2	490.247492	978.48043	0.81109	0.00039764	-0.98414	-0.00048247	-0.17305	-8.4837E-05	490.24678733288357	21.436	0.39922	21.436	21.35	21.75	0					18	9	4	0	0	0	0.0025398	1	6806	6806		171.33	57.919	1	4015600			37358	6559	25650	25740	37816	37816					-0.00967066705209163
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.24737548828125	2	490.247492	978.48043	3.4885	0.0017102	-1.8484	-0.00090618	1.6401	0.00080404	490.24601315526786	21.135	0.20356	21.135	21.04	21.243	0					14	6	3	0	0	0	0.0059342	1	6013	6013		154.01	40.6	1	341580			37359	6559	25650	25740	37817	37817					-0.00967066705209163
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2474670410156	2	490.247492	978.48043	-0.068998	-3.3826E-05	0.85476	0.00041904	0.78576	0.00038522	490.2472126941486	21.333	0.3174	21.333	21.225	21.542	0					17	6	4	0	0	0	0.0093724	1	7046	7046		142.36	28.949	1	3600700			37360	6559	25650	25740	37818	37818					-0.00967066705209163
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2472839355469	2	490.247492	978.48043	0.59926	0.00029379	0.22425	0.00010994	0.82351	0.00040372	490.2468955415836	21.223	0.15814	21.223	21.12	21.278	0					8	3	3	0	0	0	0.01776	1	6102	6102		125.68	26.307	1	389780			37361	6559	25650	25740	37819	37819					-0.00967066705209163
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2470703125	2	490.247492	978.48043	-0.11569	-5.6717E-05	-0.51273	-0.00025137	-0.62843	-0.00030808	490.2473092018292	21.206	0.15348	21.206	21.108	21.261	0					8	3	3	0	0	0	0.029172	1	6098	6098		109.83	32.512	1	445900			37362	6559	25650	25740	37820	37820					-0.00967066705209163
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2472229003906	2	490.247492	978.48043	-0.54281	-0.00026611	1.604	0.00078634	1.0612	0.00052023	490.2475049264469	21.347	0.26717	21.347	21.238	21.505	0					19	5	5	0	0	0	0.01776	1	6922	6922		125.68	37.986	1	3392200			37363	6559	25650	25740	37821	37821					-0.00967066705209163
SMNANTITK	9	Unmodified	_SMNANTITK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2473449707031	2	490.247492	978.48043	0.77291	0.00037892	-1.5033	-0.000737	-0.73041	-0.00035808	490.2469097882223	21.33	0.26628	21.33	21.222	21.488	0					15	5	4	0	0	0	0.0043467	1	6937	6937		160.82	45.328	1	3600000			37364	6559	25650	25740	37822	37822					-0.00967066705209163
SMNLQTTDI	9	Unmodified	_SMNLQTTDI_					0	0	0			REV__ENOX1|p.P124Lfs*79|1|0.27|ENSG00000120658|chr13:43361292-43361292|A/-|frameshift_variant	REV__ENOX1|p.P124Lfs*79|1|0.27|ENSG00000120658|chr13:43361292-43361292|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7431335449219	2	511.744782	1021.47501	-1.7356	-0.00088818	-1.3244	-0.00067774	-3.06	-0.0015659	511.74417883294836	36.86	0.58075	36.86	36.592	37.173	0					59	26	3	0	0	0	0.21263	1	13135	13135		60.118	3.3972	1	219390	+		37365	12805	25651	25741	37823	37823					-0.034867902877067536
SMPGVLTMI	9	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))SM(Oxidation (M))PGVLTM(Oxidation (M))I_		SM(1)PGVLTM(1)I		SM(63)PGVLTM(63)I	1	0	2		ENST00000392452.2_1_3:192517247-192517334:-|nuORF	ENST00000392452.2_1_3:192517247-192517334:-|nuORF	ENST00000392452.2_1_3:192517247-192517334:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7516784667969	2	511.748479	1021.4824	3.1073	0.0015902	2.1974	0.0011245	5.3047	0.0027147	511.7495652101823	29.728	0.51531	29.728	29.515	30.031	0					22	10	4	0	0	0	0.18605	1	10961	10961		63.306	9.9548	1	980430			37366	9144	25652	25742	37824	37824		368;369			-0.027477740116410132
SMPVRTGPR	9	Unmodified	_SMPVRTGPR_					0	0	0			REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF	REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.18328857421875	3	334.183404	999.528384	0.51972	0.00017368	-1.1297	-0.00037754	-0.61003	-0.00020386	334.18309863736357	21.184	0.59429	21.184	20.88	21.474	0					33	14	3	0	0	0	0.59802	1	6655	6655		22.58	0.61977	1	755810	+		37367	18666	25653	25743	37825	37825					0.028600520054965273
SMRPQGCAL	9	Unmodified	_SMRPQGCAL_					0	0	0			REV__chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33	REV__chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7323913574219	2	481.730954	961.447356	2.3638	0.0011387	0.85986	0.00041422	3.2237	0.0015529	481.73137414783207	31.149	0.35843	31.149	30.995	31.353	0					12	7	2	0	0	0	0.13519	1	11629	11629		71.296	2.5089	1	602260	+		37368	12473	25654	25744	37826	37826					-0.03490972028930628
SMSASVHPNK	10	Unmodified	_SMSASVHPNK_					0	0	0		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;MARK2|p.T549Rfs*67|2|0.4|ENSG00000072518|chr11:63904110-63904110|C/-|frameshift_variant;MARK2|p.Q563Sfs*53|1|0.41|ENSG00000072518|chr11:63904791-63904791|C/-|frameshift_variant	ENSG00000072518|ENST00000402010|MARK2	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2587890625	2	529.258391	1056.50223	0.28623	0.00015149	-0.35626	-0.00018855	-0.070032	-3.7065E-05	529.258719863169	16.987	0.16746	16.987	16.879	17.047	0					9	3	3	0	0	0	0.44601	1	4980	4980		51.193	3.5354	1	213220			37369	1494	25655	25745	37827	37827					-0.023762619566468857
SMSTVANRSI	10	Oxidation (M)	_SM(Oxidation (M))STVANRSI_		SM(1)STVANRSI		SM(44)STVANRSI	0	0	1			REV__ENST00000498833.1_1_7:22985770-23000907:-|nuORF	REV__ENST00000498833.1_1_7:22985770-23000907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.1819152832031	3	361.181729	1080.52336	3.1116	0.0011238	-2.7934	-0.0010089	0.31815	0.00011491	361.18083773413804	27.079	1.5228	27.079	26.722	28.245	0					58	30	4	0	0	0	0.5155	1	9659	9659		43.651	8.4988	1	10534000	+		37370	14337	25656	25746	37828	37828		544			-0.013682966477972514
SMTKKSLQ	8	Unmodified	_SMTKKSLQ_					0	0	0			REV__CEP290|p.N212Tfs*14|4|0.21|ENSG00000198707|chr12:88130302-88130302|T/-|frameshift_variant	REV__CEP290|p.N212Tfs*14|4|0.21|ENSG00000198707|chr12:88130302-88130302|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.7530212402344	2	461.754953	921.495352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.835	1	32.835	32.335	33.335	0								0	0	0	1.7419	1	11459	11459		35.618	2.8059	1		+		37371	12428	25657	25747	37829	37829					0.03146425162788091
SMVASMIG	8	Unmodified	_SMVASMIG_					0	0	0			REV__ENST00000559115.5_1_14:24592905-24593049:+|nuORF	REV__ENST00000559115.5_1_14:24592905-24593049:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	398.19000244140625	2	398.1906	794.366646	-0.079041	-3.1474E-05	-1.1273	-0.00044886	-1.2063	-0.00048034	398.19008239387824	18.066	0.11841	18.066	17.988	18.106	0					5	3	2	0	0	0	0.75243	1	4431	4431		26.796	0	1	152000	+		37372	20277	25658	25748	37830	37830					-0.038762530718031485
SNALSVQLPV	10	Unmodified	_SNALSVQLPV_					0	0	0			REV__ENSG00000269526|ENST00000602168|ERVV-1	REV__ENSG00000269526|ENST00000602168|ERVV-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1974182128906	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.488	1	39.488	38.988	39.988	0								0	0	0	0.3963	1	15611	15611		31.634	0.10446	1		+		37373	17800	25659	25749	37831	37831					0.05873725614696923
SNALSVQLPV	10	Unmodified	_SNALSVQLPV_					0	0	0			REV__ENSG00000269526|ENST00000602168|ERVV-1	REV__ENSG00000269526|ENST00000602168|ERVV-1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1975402832031	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.183	1	46.183	45.683	46.683	0								0	0	0	0.41137	1	18485	18485		27.047	1.4733	1		+		37374	17800	25659	25749	37832	37832					0.05873725614696923
SNANIKISGK	10	Unmodified	_SNANIKISGK_					0	0	0		ENSG00000101425|ENST00000642449|BPI;nc|ENSG00000101425|P17213|BPI	ENSG00000101425|ENST00000642449|BPI	ENSG00000101425|ENST00000642449|BPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2960815429688	2	516.29583	1030.57711	1.7373	0.00089696	-1.7899	-0.00092412	-0.052616	-2.7166E-05	516.2948324956205	20.825	0.11912	20.825	20.714	20.833	0					4	2	2	0	0	0	0.41384	1	6512	6512		54.722	3.5297	1	164550			37375	2120	25660	25750	37833	37833					0.06304243846238933
SNDANNGEHT	10	Unmodified	_SNDANNGEHT_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19336661-19337609:+|nuORF	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7022705078125	2	529.710316	1057.40608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.728	1	12.728	12.228	13.228	0								0	0	0	0.4201	1	2935	2935		14.137	0	1				37376	772	25661	25751	37834	37834					-0.1203273826304212
SNDEEKVQGK	10	Unmodified	_SNDEEKVQGK_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3-2|QSER1	REV__nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.2745361328125	2	567.275292	1132.53603	-1.2225	-0.00069351	-0.67306	-0.00038181	-1.8956	-0.0010753	567.2754473145782	30.765	0.15195	30.765	30.68	30.832	0					9	4	3	0	0	0	0.52275	1	10521	10521		42.864	7.246	1	108140	+		37377	13083	25662	25752	37835	37835					-0.024935619838970524
SNDKPIIIQ	9	Unmodified	_SNDKPIIIQ_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1988220214844	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.904	1	27.904	27.404	28.404	0								0	0	0	0.33579	1	10044	10044		28.081	1.0342	1		+		37378	14505	25663	25753	37836	37836					0.058737256147196604
SNFKELAILV	10	Unmodified	_SNFKELAILV_					0	0	0			REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.3311157226562	2	567.331882	1132.64921	-0.11705	-6.6405E-05	-1.5199	-0.00086231	-1.637	-0.00092871	567.3308648866032	50.771	0.45695	50.771	50.569	51.026	0					52	28	2	0	0	0	0.70877	1	16556	16556		20.947	0	1	87373	+		37379	21794	25664	25754	37837	37837					0.08819158199935373
SNGMLTCLLS	10	Unmodified	_SNGMLTCLLS_					0	0	0		ENST00000458726.5_1_7:137618524-137618635:-|nuORF	ENST00000458726.5_1_7:137618524-137618635:-|nuORF	ENST00000458726.5_1_7:137618524-137618635:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.8366394042969	3	346.836794	1037.48855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.676	1	26.676	26.176	27.176	0								0	0	0	0.38797	1	9576	9576		25.126	0	1				37380	9713	25665	25755	37838	37838					-0.028692557801150542
SNGRAGYSQQ	10	Unmodified	_SNGRAGYSQQ_					0	0	0		ENST00000567680.1_1_15:66063956-66064049:-|nuORF;nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14	ENST00000567680.1_1_15:66063956-66064049:-|nuORF	ENST00000567680.1_1_15:66063956-66064049:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2469482421875	2	534.246869	1066.47918	1.1495	0.00061414	-0.64836	-0.00034638	0.50119	0.00026776	534.2467963590103	15.394	0.11598	15.394	15.335	15.451	0					13	5	3	0	0	0	0.44601	1	3336	3336		51.193	3.5354	1	117290			37381	5641	25666	25756	37839	37839					-0.05139564749765668
SNIEEVVQW	9	Unmodified	_SNIEEVVQW_					0	0	0		tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2760009765625	2	552.272021	1102.52949	3.6749	0.0020296	3.0839	0.0017032	6.7588	0.0037327	552.2739767045914	19.919	0.26909	19.919	19.808	20.077	0					13	5	3	0	0	0	0.15163	1	6252	6252		67.494	5.3863	1	743810			37382	22992	25667	25757	37840	37840					-0.0176745514461345
SNKEEELQR	9	Unmodified	_SNKEEELQR_					0	0	0			REV__nc|ENSG00000133026|P35580|MYH10	REV__nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7832641601562	2	566.783284	1131.55202	0.25673	0.00014551	-0.53356	-0.00030241	-0.27682	-0.0001569	566.7829392370608	34.249	0.29082	34.249	34.121	34.412	0					13	7	2	0	0	0	0.15558	1	13173	13173		69.628	0	1	497300	+		37383	14690	25668	25758	37841	37841					-0.008498557469920343
SNKISQDSES	10	Unmodified	_SNKISQDSES_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;ZGRF1|p.I715Yfs*5|1|0.35|ENSG00000138658|chr4:112617899-112617900|-/A|frameshift_variant;ZGRF1|p.L728Yfs*14|1|0.17|ENSG00000138658|chr4:112617859-112617859|A/-|frameshift_variant;ZGRF1|p.H772Afs*13|1|0.34|ENSG00000138658|chr4:112617729-112617730|-/T|frameshift_variant;ZGRF1|p.K771Sfs*52|1|0.1|ENSG00000138658|chr4:112617730-112617730|T/-|frameshift_variant;nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.7505493164062	2	547.75165	1093.48875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.031	1	21.031	20.531	21.531	0								0	0	0	0.4201	1	5973	5973		14.137	0	1				37384	4277	25669	25759	37842	37842					-0.05425841254896113
SNKKLFSLA	9	Unmodified	_SNKKLFSLA_					0	0	0		NAA60|p.F52L|1|0.31|ENSG00000122390|chr16:3479516-3479516|C/A|missense_variant	NAA60|p.F52L|1|0.31|ENSG00000122390|chr16:3479516-3479516|C/A|missense_variant	NAA60|p.F52L|1|0.31|ENSG00000122390|chr16:3479516-3479516|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.377	1	26.377	25.877	26.877	0								0	0	0	0.3304	1	9433	9433		29.17	3.596	1				37385	11403	25670	25760	37843	37843					0.07810333339944009
SNKNQVNLM	9	Unmodified	_SNKNQVNLM_					0	0	0			REV__TUBB|p.S339G|1|0.27|ENSG00000196230|chr6:30724077-30724077|A/G|missense_variant	REV__TUBB|p.S339G|1|0.27|ENSG00000196230|chr6:30724077-30724077|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2678833007812	2	524.266216	1046.51788	0.51564	0.00027033	1.6227	0.00085072	2.1383	0.0011211	524.2674556154221	34.109	0.30447	34.109	33.957	34.261	0					11	6	2	0	0	0	0.49003	1	13050	13050		33.516	3.1979	1	123240	+		37386	14915	25671	25761	37844	37844					-0.0035197543959384348
SNLHALMNQ	9	Unmodified	_SNLHALMNQ_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2530517578125	2	514.253108	1026.49166	0.020599	1.0593E-05	-0.024189	-1.2439E-05	-0.00359	-1.8462E-06	514.2530726330232	11.546	0.19441	11.546	11.436	11.63	0					15	7	3	0	0	0	0.47038	1	2228	2228		35.618	7.736	1	1086400			37387	199	25672	25762	37845	37845					-0.020522446110817327
SNLHALMNQ	9	Unmodified	_SNLHALMNQ_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2529907226562	2	514.253108	1026.49166	-0.48356	-0.00024867	0.46604	0.00023966	-0.01752	-9.0096E-06	514.2533352706497	11.607	0.19643	11.607	11.453	11.65	0					13	5	3	0	0	0	0.42902	1	2395	2395		39.253	5.0803	1	867100			37388	199	25672	25762	37846	37846					-0.020522446110817327
SNLLIQMSA	9	Unmodified	_SNLLIQMSA_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	326.1436462402344	3	326.175915	975.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.628	1	51.628	51.128	52.128	0								0	0	0	0.37821	1	16752	16752		12.812	0	1				37389	6093	25673	25763	37847	37847					0.017184078172022055
SNLLLKTYP	9	Unmodified	_SNLLLKTYP_					0	0	0			REV__tr|U7SSL7|U7SSL7_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01495PE=3SV=1	REV__tr|U7SSL7|U7SSL7_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01495PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.2074279785156	3	350.206092	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.369	1	32.369	31.869	32.869	0								0	0	0	0.35507	1	11251	11251		18.262	1.5447	1		+		37390	21876	25674	25764	37848	37848					0.07455200137133033
SNMEFEER	8	Unmodified	_SNMEFEER_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7877197265625	2	521.218931	1040.42331	0.32497	0.00016938	0.62483	0.00032567	0.9498	0.00049505	521.2189138409544	25.405	0.11017	25.405	25.346	25.456	0					8	4	2	0	0	0	0.76283	1	7880	7880		25.45	1.2474	1	77089			37391	4381	25675	25765	37849	37849					-0.0952853398159732
SNMKMRGKL	9	Unmodified	_SNMKMRGKL_					0	0	0			REV__ENST00000303531.11_2_16:24196492-24196841:+|nuORF	REV__ENST00000303531.11_2_16:24196492-24196841:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7904052734375	2	532.788804	1063.56305	0.40002	0.00021312	2.6989	0.0014379	3.0989	0.0016511	532.790514687816	21.769	0.095163	21.769	21.706	21.801	0					5	3	2	0	0	0	0.4966	1	6055	6055		32.812	1.2826	1	78038	+		37392	18221	25676	25766	37850	37850					0.03381551821962603
SNMVHTAK	8	Unmodified	_SNMVHTAK_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2236633300781	2	444.22382	886.433086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.659	1	19.659	19.159	20.159	0								0	0	0	1.7419	1	5381	5381		66.962	19.305	1				37393	2939	25677	25767	37851	37851					-0.014673011855620643
SNNDANKKF	9	Unmodified	_SNNDANKKF_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.257568359375	2	519.254163	1036.49377	4.8785	0.0025332	1.1828	0.00061417	6.0613	0.0031473	519.2547013270305	36.554	0.37371	36.554	36.366	36.74	0					27	20	2	0	0	0	0.087861	1	12414	12414		82.241	2.7895	1	45728	+		37394	16499	25678	25768	37852	37852					-0.023014926016230675
SNNLSQALSL	10	Unmodified	_SNNLSQALSL_					0	0	0			REV__TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant	REV__TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7784423828125	2	523.77747	1045.54039	0.74212	0.00038871	-0.10813	-5.6638E-05	0.63399	0.00033207	523.7776257501081	32.346	0.18348	32.346	32.289	32.473	0					14	7	3	0	0	0	0.4758	1	10455	10455		47.96	0.73184	1	132910	+		37395	13519	25679	25769	37853	37853					0.019439472296653548
SNNSGLLHLN	10	Unmodified	_SNNSGLLHLN_					0	0	0			REV__ENST00000557192.1_1_14:58896136-58899908:+|nuORF	REV__ENST00000557192.1_1_14:58896136-58899908:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7781982421875	2	534.775262	1067.53597	3.3747	0.0018047	0.65292	0.00034916	4.0276	0.0021539	534.7758049117052	36.453	0.31821	36.453	36.346	36.664	0					12	6	2	0	0	0	0.60281	1	14159	14159		33.922	0	1	1241100	+		37396	20257	25680	25770	37854	37854					0.004904828067765266
SNNYLQPFEMY	11	Oxidation (M)	_SNNYLQPFEM(Oxidation (M))Y_		SNNYLQPFEM(1)Y		SNNYLQPFEM(40)Y	0	0	1			REV__ENSG00000006007|ENST00000353258|GDE1	REV__ENSG00000006007|ENST00000353258|GDE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	711.3037109375	2	711.305735	1420.59692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.137	1	19.137	18.637	19.637	0								0	0	0	0.38672	1	5998	5998		40.058	9.7405	1		+		37397	12843	25681	25771	37855	37855		495			-0.09655792995977208
SNPAFEWHQ	9	Unmodified	_SNPAFEWHQ_					0	0	0			REV__ENSG00000130227|ENST00000252512|XPO7	REV__ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.2489624023438	2	558.24888	1114.48321	1.1177	0.00062393	-0.35766	-0.00019966	0.76	0.00042427	558.2485726282807	33.455	1.1133	33.455	33.218	34.331	0					92	32	5	0	0	0	0.50858	1	11856	11856		31.53	1.0262	1	3326400	+		37398	14569	25682	25772	37856	37856					-0.06945475256065947
SNPGGRPAL	9	Unmodified	_SNPGGRPAL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7356262207031	2	434.735409	867.456264	0.20973	9.1179E-05	-0.49737	-0.00021622	-0.28763	-0.00012504	434.7351065756739	21.814	0.13866	21.814	21.713	21.852	0					8	4	2	0	0	0	0.41113	1	6057	6057		40.778	3.6191	1	64747			37399	2857	25683	25773	37857	37857					0.01723460923415132
SNPGGRPAL	9	Unmodified	_SNPGGRPAL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7351379394531	2	434.735409	867.456264	0.68455	0.0002976	-1.193	-0.00051865	-0.50848	-0.00022105	434.73479107154606	22.125	0.27553	22.125	22.031	22.307	0					16	6	3	0	0	0	0.10915	1	7152	7152		77.318	23.966	1	690910			37400	2857	25683	25773	37858	37858					0.01723460923415132
SNPGGRPAL	9	Unmodified	_SNPGGRPAL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.7359924316406	2	434.735409	867.456264	3.2185	0.0013992	-3.193	-0.0013881	0.025502	1.1087E-05	434.7339067359539	21.856	0.15395	21.856	21.756	21.909	0					6	4	2	0	0	0	0.4966	1	6324	6324		32.812	12.331	1	34809			37401	2857	25683	25773	37859	37859					0.01723460923415132
SNPGGRPAL	9	Unmodified	_SNPGGRPAL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7350769042969	2	434.735409	867.456264	-0.44212	-0.00019221	-0.037045	-1.6105E-05	-0.47917	-0.00020831	434.7353789752826	22.029	0.21286	22.029	21.924	22.136	0					11	4	3	0	0	0	0.17854	1	7387	7387		64.207	29.007	1	392890			37402	2857	25683	25773	37860	37860					0.01723460923415132
SNPGGRPAL	9	Unmodified	_SNPGGRPAL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.735107421875	2	434.735409	867.456264	-0.52014	-0.00022612	0.10324	4.4884E-05	-0.41689	-0.00018124	434.73545084413445	22.043	0.31986	22.043	21.887	22.207	0					13	6	3	0	0	0	0.1424	1	7263	7263		69.628	30.821	1	409110			37403	2857	25683	25773	37861	37861					0.01723460923415132
SNPGKPAK	8	Unmodified	_SNPGKPAK_					0	0	0			REV__GTF3C2|p.G110Afs*20|1|0.38|ENSG00000115207|chr2:27343068-27343068|T/-|frameshift_variant	REV__GTF3C2|p.G110Afs*20|1|0.38|ENSG00000115207|chr2:27343068-27343068|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.727294921875	2	399.727052	797.439552	-0.13526	-5.4067E-05	0.21826	8.7243E-05	0.082996	3.3176E-05	399.7270383880514	22.194	0.19283	22.194	22.111	22.304	0					7	4	2	0	0	0	0.7976	1	6588	6588		20.947	2.6225	1	43965	+		37404	20712	25684	25774	37862	37862					0.0327296003746369
SNPHTQQL	8	Unmodified	_SNPHTQQL_					0	0	0			REV__ENSG00000172771|ENST00000505956|EFCAB12	REV__ENSG00000172771|ENST00000505956|EFCAB12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7322082519531	2	462.730323	923.446094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.222	1	48.222	47.722	48.722	0								0	0	0	1.7419	1	19178	19178		47.657	5.2612	1		+		37405	16477	25685	25775	37863	37863					-0.01869146801811894
SNPPPQDTL	9	Unmodified	_SNPPPQDTL_					0	0	0		nc|ENSG00000100593|Q6H9L7-5|ISM2;nc|ENSG00000100593|Q6H9L7-3|ISM2;ENSG00000100593|ENST00000342219|ISM2	nc|ENSG00000100593|Q6H9L7-5|ISM2	nc|ENSG00000100593|Q6H9L7-5|ISM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7373352050781	2	484.737814	967.461075	-0.69731	-0.00033801	1.0157	0.00049235	0.3184	0.00015434	484.7381519044545	28.577	0.13798	28.577	28.509	28.647	0					7	5	2	0	0	0	0.58342	1	9231	9231		23.523	1.5628	1	67816			37406	2046	25686	25776	37864	37864					-0.023956997244795275
SNQWTKMAATV	11	Oxidation (M)	_SNQWTKM(Oxidation (M))AATV_		SNQWTKM(1)AATV		SNQWTKM(56)AATV	0	0	1			REV__ENST00000324695.8_1_2:234873347-234879062:+|nuORF	REV__ENST00000324695.8_1_2:234873347-234879062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.8040161132812	2	626.803162	1251.59177	0.18787	0.00011776	1.2164	0.00076242	1.4042	0.00088017	626.804051926534	18.283	0.097864	18.283	18.231	18.329	0					7	4	2	0	0	0	0.35529	1	4529	4529		56.434	15.007	1	83441	+		37407	18348	25687	25777	37865	37865		685			-0.02396052067956589
SNRKVRALA	9	Unmodified	_SNRKVRALA_					0	0	0		ENSG00000198889|ENST00000371126|DCAF12L1;ENSG00000198354|ENST00000360028|DCAF12L2	ENSG00000198889|ENST00000371126|DCAF12L1	ENSG00000198889|ENST00000371126|DCAF12L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.810302734375	2	507.811982	1013.60941	-1.9062	-0.00096798	-1.4902	-0.00075677	-3.3964	-0.0017247	507.8112685609494	28.508	0.20848	28.508	28.39	28.599	0					12	5	3	0	0	0	0.48389	1	9482	9482		34.173	34.173	1	183730			37408	7634	25688	25778	37866	37866					0.10315076039887572
SNRRLERK	8	Unmodified	_SNRRLERK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8140869140625	2	529.812513	1057.61047	1.7343	0.00091886	1.4781	0.00078311	3.2124	0.001702	529.8133724362597	34.653	0.24106	34.653	34.53	34.771	0					12	6	3	0	0	0	0.61938	1	13385	13385		45.952	6.6991	1	314890			37409	3565	25689	25779	37867	37867					0.08397290408788649
SNRRRRQTWRR	11	Unmodified	_SNRRRRQTWRR_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.6339721679688	3	524.633195	1570.87776	0.09369	4.9153E-05	1.595	0.00083678	1.6887	0.00088593	524.6338206067219	19.397	0.14757	19.397	19.294	19.441	0					7	3	3	0	0	0	0.83611	1	5855	5855		7.3413	0	1	1103800	+		37410	17919	25690	25780	37868	37868					0.1151518834003582
SNRVVLGDL	9	Unmodified	_SNRVVLGDL_					0	0	0			REV__nc|ENSG00000105371|Q14773-2|ICAM4	REV__nc|ENSG00000105371|Q14773-2|ICAM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7773742675781	2	486.777274	971.539994	-0.69665	-0.00033911	0.21097	0.0001027	-0.48568	-0.00023642	486.7774600796377	25.216	0.21757	25.216	25.073	25.29	0					8	4	3	0	0	0	0.39215	1	8941	8941		42.396	0	1	173270	+		37411	20962	25691	25781	37869	37869					0.053085723004642205
SNSISVSK	8	Unmodified	_SNSISVSK_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	411.2215881347656	2	411.2218	820.429047	1.0102	0.00041543	-1.7104	-0.00070337	-0.70022	-0.00028795	411.22094752145154	15.85	0.13383	15.85	15.775	15.909	0					7	3	3	0	0	0	0.66372	1	4197	4197		38.806	1.647	1	158310			37412	10391	25692	25782	37870	37870					0.011649325923826837
SNSYAIKK	8	Unmodified	_SNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.7528076171875	2	455.753267	909.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.439	1	16.439	15.939	16.939	0								0	0	0	1.7419	1	3740	3740		79.713	24.936	1				37413	1704	25693	25783	37871	37871					0.03361498380422745
SNSYAIKK	8	Unmodified	_SNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.75299072265625	2	455.753267	909.491981	0.73804	0.00033637	-2.0212	-0.00092117	-1.2831	-0.0005848	455.75278645007296	16.711	0.25396	16.711	16.576	16.83	0					13	6	3	0	0	0	0.27635	1	4593	4593		90.37	8.0648	1	479950			37414	1704	25693	25783	37872	37872					0.03361498380422745
SNSYAIKK	8	Unmodified	_SNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7529602050781	2	455.753267	909.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.68	1	16.68	16.18	17.18	0								0	0	0	1.7419	1	4666	4666		68.787	13.283	1				37415	1704	25693	25783	37873	37873					0.03361498380422745
SNTITPRI	8	Unmodified	_SNTITPRI_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.25830078125	2	451.258717	900.50288	-1.1904	-0.00053719	0.61779	0.00027878	-0.57264	-0.00025841	451.2589566668827	29.232	0.22663	29.232	29.136	29.362	0					23	9	3	0	0	0	0.28427	1	9485	9485		87.754	2.5935	1	623620	+		37416	15181	25694	25784	37874	37874					0.0486490075469419
SNTLYLKAALN	11	Unmodified	_SNTLYLKAALN_					0	0	0			REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF	REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.2263488769531	3	403.227556	1206.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.823	1	36.823	36.323	37.323	0								0	0	0	0.41817	1	14367	14367		33.039	4.9579	1		+		37417	13696	25695	25785	37875	37875					0.06577355223271297
SNVGVALTF	9	Unmodified	_SNVGVALTF_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2486267089844	2	454.247818	906.481082	0.0050734	2.3046E-06	3.1282	0.001421	3.1333	0.0014233	454.2488292151044	32.28	0.15847	32.28	32.173	32.332	0					9	7	2	0	0	0	0.54267	1	10413	10413		27.882	1.0861	1	32526			37418	4271	25696	25786	37876	37876					0.024100960061218757
SNVHKVQG	8	Unmodified	_SNVHKVQG_					0	0	0		OSBPL7|p.E685K|1|0.34|ENSG00000006025|chr17:47809193-47809193|C/T|missense_variant	OSBPL7|p.E685K|1|0.34|ENSG00000006025|chr17:47809193-47809193|C/T|missense_variant	OSBPL7|p.E685K|1|0.34|ENSG00000006025|chr17:47809193-47809193|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.73553466796875	2	434.735409	867.456264	0.23147	0.00010063	0.19842	8.626E-05	0.42989	0.00018689	434.7354859160393	21.91	0.19787	21.91	21.776	21.973	0					6	4	2	0	0	0	0.79719	1	6432	6432		18.324	0.95945	1	42871			37419	11888	25697	25787	37877	37877					0.017234609234378695
SNVLILVGT	9	Unmodified	_SNVLILVGT_					0	0	0			REV__ENSG00000183742|ENST00000400331|MACC1	REV__ENSG00000183742|ENST00000400331|MACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2790222167969	2	458.279118	914.543683	-0.64536	-0.00029576	-1.0686	-0.0004897	-1.7139	-0.00078546	458.2789787351088	37.88	0.1229	37.88	37.759	37.882	0					10	4	3	0	0	0	0.43426	1	14366	14366		38.806	0	1	98800	+		37420	16949	25698	25788	37878	37878					0.08299242074338053
SNVNLTCQF	9	Unmodified	_SNVNLTCQF_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2061767578125	2	513.239667	1024.46478	-0.46561	-0.00023897	2.2868	0.0011737	1.8212	0.00093472	513.2409299155609	11.973	0.69708	11.973	11.813	12.51	0					28	18	2	0	0	0	0.5879	1	2664	2664		23.042	3.0457	1	1063200			37421	6245	25699	25789	37879	37879					-0.04647353222264883
SNVVKIILI	9	Unmodified	_SNVVKIILI_					0	0	0		nc|ENSG00000227152|P0C7T2|OR2T7;ENSG00000187701|ENST00000460972|OR2T27	nc|ENSG00000227152|P0C7T2|OR2T7	nc|ENSG00000227152|P0C7T2|OR2T7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.5588684082031	3	333.558466	997.653567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.649	1	34.649	34.149	35.149	0								0	0	0	0.37821	1	11339	11339		12.812	0	1				37422	7210	25700	25790	37880	37880					0.15464667413527877
SNVVREQL	8	Unmodified	_SNVVREQL_					0	0	0			REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.76123046875	2	472.761623	943.508694	-0.52507	-0.00024823	-1.3669	-0.00064621	-1.892	-0.00089444	472.7608936711923	26.47	0.13996	26.47	26.383	26.523	0					6	3	2	0	0	0	0.5535	1	8540	8540		54.776	3.4409	1	60625	+		37423	14828	25701	25791	37881	37881					0.03467999266388233
SNVVVLPGNS	10	Unmodified	_SNVVVLPGNS_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant;NPAT|p.K1038Efs*20|1|0.37|ENSG00000149308|chr11:108161974-108161975|-/C|frameshift_variant;NPAT|p.H1279Qfs*13|1|0.22|ENSG00000149308|chr11:108161248-108161249|TA/-|frameshift_variant;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.1829528808594	3	329.181946	984.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.892	1	26.892	26.392	27.392	0								0	0	0	0.4201	1	8508	8508		17.833	0.6664	1				37424	4877	25702	25792	37882	37882					0.031128660635772576
SNWGLLATK	9	Unmodified	_SNWGLLATK_					0	0	0			REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.27581787109375	2	495.274367	988.53418	2.8351	0.0014042	-0.31611	-0.00015656	2.519	0.0012476	495.27427762552486	30.368	0.30965	30.368	30.115	30.425	0					16	6	4	0	0	0	0.15558	1	11219	11219		66.962	0.53265	1	4001000	+		37425	22295	25703	25793	37883	37883					0.03945473788803611
SNYKGKTVY	9	Unmodified	_SNYKGKTVY_					0	0	0		tr|U7SJ20|U7SJ20_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02065PE=4SV=1	tr|U7SJ20|U7SJ20_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02065PE=4SV=1	tr|U7SJ20|U7SJ20_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02065PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2772827148438	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.901	1	32.901	32.401	33.401	0								0	0	0	0.30504	1	10667	10667		34.173	5.9183	1				37426	22605	25704	25794	37884	37884					0.012731525806202626
SNYNKEAIK	9	Unmodified	_SNYNKEAIK_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;SCN3A|p.T1958Qfs*16|1|0.28|ENSG00000153253|chr2:165090281-165090281|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7792358398438	2	533.780013	1065.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.445	1	24.445	23.945	24.945	0								0	0	0	0.36609	1	7483	7483		20.947	0	1				37427	5048	25705	25795	37885	37885					0.015322510922487709
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.514404296875	3	368.514931	1102.52296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.821	1	24.821	24.321	25.321	0								0	0	0	0.3063	1	7385	7385		33.922	3.6039	1				37428	6489	25706	25796	37886	37886					-0.024196715769903676
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.51483154296875	3	368.514931	1102.52296	0.76465	0.00028179	-1.235	-0.00045511	-0.47034	-0.00017333	368.5145895454867	25.08	0.47746	25.08	24.825	25.303	0					34	11	4	0	0	0	0.34452	1	8506	8506		46.457	7.2039	1	710670			37429	6489	25706	25796	37887	37887					-0.024196715769903676
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.2694702148438	2	552.268758	1102.52296	0.24717	0.0001365	0.60671	0.00033507	0.85387	0.00047157	552.2692577575463	24.875	0.32702	24.875	24.677	25.004	0					17	11	2	0	0	0	0.36135	1	7646	7646		45.972	3.5761	1	110910			37430	6489	25706	25796	37888	37888					-0.024196715769903676
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2689819335938	2	552.268758	1102.52296	1.6027	0.00088515	-0.63598	-0.00035123	0.96677	0.00053392	552.2684577703594	25.098	0.46542	25.098	24.842	25.307	0					20	9	3	0	0	0	0.022698	1	8878	8878		112.41	38.156	1	773940			37431	6489	25706	25796	37889	37889					-0.024196715769903676
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.5146179199219	3	368.514931	1102.52296	-0.11111	-4.0947E-05	-0.37049	-0.00013653	-0.48161	-0.00017748	368.51483611275194	24.96	0.24113	24.96	24.814	25.055	0					8	5	2	0	0	0	0.30841	1	7853	7853		49.536	49.536	1	99095			37432	6489	25706	25796	37890	37890					-0.024196715769903676
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.269287109375	2	552.268758	1102.52296	-1.2822	-0.00070811	1.8882	0.0010428	0.60605	0.0003347	552.2699816986667	24.928	0.32742	24.928	24.758	25.085	0					12	7	2	0	0	0	0.14673	1	7849	7849		70.816	30.244	1	95650			37433	6489	25706	25796	37891	37891					-0.024196715769903676
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.5148010253906	3	368.514931	1102.52296	0.9144	0.00033697	-1.4569	-0.0005369	-0.54253	-0.00019993	368.5145119248158	25.004	0.55736	25.004	24.707	25.264	0					30	11	4	0	0	0	0.25761	1	8688	8688		54.722	1.6334	1	1824500			37434	6489	25706	25796	37892	37892					-0.024196715769903676
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2694091796875	2	552.268758	1102.52296	3.6747	0.0020294	-0.86886	-0.00047984	2.8059	0.0015496	552.267362671129	25.103	0.70872	25.103	24.739	25.448	0					27	14	3	0	0	0	0.024312	1	8706	8706		120.87	46.613	1	597510			37435	6489	25706	25796	37893	37893					-0.024196715769903676
SPAAMNSAPRD	11	Unmodified	_SPAAMNSAPRD_					0	0	0			REV__ENST00000354883.10_1_3:66271363-66271495:+|nuORF	REV__ENST00000354883.10_1_3:66271363-66271495:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.759033203125	2	558.758755	1115.50296	0.52571	0.00029375	0.069177	3.8653E-05	0.59489	0.0003324	558.7587307482098	12.755	0.24148	12.755	12.595	12.837	0					13	7	3	0	0	0	0.69524	1	2753	2753		28.081	4.5588	1	1921600	+		37436	18504	25707	25797	37894	37894					-0.05017467307584411
SPAAPARR	8	Unmodified	_SPAAPARR_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.23699951171875	2	413.238119	824.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.203	1	43.203	42.703	43.703	0								0	0	0	1.7419	1	16920	16920		31.955	6.5047	1				37437	2393	25708	25798	37895	37895					0.04243184505889985
SPAAYLIGR	9	Unmodified	_SPAAYLIGR_					0	0	0			REV__CD19|p.Q512Sfs*67|1|0.34|ENSG00000177455|chr16:28938718-28938718|C/-|frameshift_variant	REV__CD19|p.Q512Sfs*67|1|0.34|ENSG00000177455|chr16:28938718-28938718|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2689208984375	2	474.269084	946.523616	-0.56643	-0.00026864	0.18347	8.7013E-05	-0.38296	-0.00018163	474.2692119055691	21.151	0.31245	21.151	21.045	21.357	0					14	6	3	0	0	0	0.18605	1	6979	6979		63.306	2.3343	1	1085100	+		37438	12382	25709	25799	37896	37896					0.048214911343848144
SPADPTRTF	9	Unmodified	_SPADPTRTF_					0	0	0		KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2455139160156	2	496.245806	990.47706	-0.035157	-1.7446E-05	-0.22438	-0.00011135	-0.25954	-0.00012879	496.24549646736165	28.093	0.19353	28.093	27.964	28.157	0					6	4	2	0	0	0	0.28897	1	10272	10272		51.193	20.689	1	47054			37439	8088	25710	25800	37897	37897					-0.018559934875725048
SPAEDKSSF	9	Unmodified	_SPAEDKSSF_					0	0	0		ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.2218322753906	2	484.221997	966.429441	1.1739	0.00056841	-0.49979	-0.00024201	0.67408	0.00032641	484.2217875043131	21.254	0.19342	21.254	21.183	21.377	0					10	5	3	0	0	0	0.0097668	1	5835	5835		141.52	50.581	1	116510			37440	6983	25711	25801	37898	37898					-0.05511692478421537
SPAEDKSSF	9	Unmodified	_SPAEDKSSF_					0	0	0		ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.22198486328125	2	484.221997	966.429441	0.32974	0.00015967	-0.74287	-0.00035972	-0.41314	-0.00020005	484.22161681223133	21.588	0.27873	21.588	21.487	21.766	0					16	6	4	0	0	0	0.003936	1	6871	6871		163.15	88.896	1	1001200			37441	6983	25711	25801	37899	37899					-0.05511692478421537
SPALHPRQ	8	Unmodified	_SPALHPRQ_					0	0	0			REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.25018310546875	2	453.251226	904.487899	-0.12106	-5.4872E-05	-2.5677	-0.0011638	-2.6888	-0.0012187	453.25021776628404	15.543	0.16614	15.543	15.434	15.6	0					5	3	2	0	0	0	0.72381	1	4284	4284		30.504	2.6214	1	129240	+		37442	18982	25712	25802	37900	37900					0.031834536773772015
SPALNMHLV	9	Unmodified	_SPALNMHLV_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN;ENST00000562969.1_1_16:81069676-81075119:+|nuORF	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2619934082031	2	491.262945	980.511337	-1.3473	-0.00066186	0.22429	0.00011018	-1.123	-0.00055168	491.26319885316605	34.509	0.19225	34.509	34.464	34.656	0					12	8	2	0	0	0	0.41113	1	11638	11638		40.778	0.20554	1	74640			37443	5906	25713	25803	37901	37901					0.02030131399669699
SPAQCIPAI	9	Carbamidomethyl (C)	_SPAQC(Carbamidomethyl (C))IPAI_	SPAQC(1)IPAI		SPAQC(79)IPAI		0	1	0		ENST00000315293.6_2_9:67019055-67031582:-|nuORF	ENST00000315293.6_2_9:67019055-67031582:-|nuORF	ENST00000315293.6_2_9:67019055-67031582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7486877441406	2	478.747127	955.479702	2.2675	0.0010855	2.0535	0.00098309	4.3209	0.0020686	478.74786777787784	39.758	0.72979	39.758	39.404	40.134	0					37	16	3	0	0	0	0.099922	1	15667	15667		79.451	8.0731	1	230890			37444	8578	25714	25804	37902	37902	373				0.00018138645714316226
SPAQEDGKVY	10	Unmodified	_SPAQEDGKVY_					0	0	0		ENSG00000126264|ENST00000246551|HCST	ENSG00000126264|ENST00000246551|HCST	ENSG00000126264|ENST00000246551|HCST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2618408203125	2	547.261653	1092.50875	0.75085	0.00041091	-0.19143	-0.00010476	0.55942	0.00030615	547.2614354017983	22.526	0.20894	22.526	22.468	22.677	0					7	4	2	0	0	0	0.019261	1	7650	7650		125.71	61.506	1	303480			37445	3471	25715	25805	37903	37903					-0.03380045524272646
SPAQEDGKVY	10	Unmodified	_SPAQEDGKVY_					0	0	0		ENSG00000126264|ENST00000246551|HCST	ENSG00000126264|ENST00000246551|HCST	ENSG00000126264|ENST00000246551|HCST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2622680664062	2	547.261653	1092.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.476	1	22.476	21.976	22.976	0								0	0	0	0.35072	1	6702	6702		42.864	2.0861	1				37446	3471	25715	25805	37904	37904					-0.03380045524272646
SPATTSHGNA	10	Unmodified	_SPATTSHGNA_					0	0	0		nc|ENSG00000129226|P34810-3|CD68;ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF	nc|ENSG00000129226|P34810-3|CD68	nc|ENSG00000129226|P34810-3|CD68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.72064208984375	2	471.717413	941.420273	3.7922	0.0017889	3.4267	0.0016164	7.2189	0.0034053	471.7189166592359	30.321	0.2408	30.321	30.222	30.463	0					11	7	2	0	0	0	0.50881	1	9927	9927		44.377	10.205	1	123050			37447	3586	25716	25806	37905	37905					-0.05278041044095971
SPCGPGGGG	9	Unmodified	_SPCGPGGGG_					0	0	0		YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant;ENSG00000047188|ENST00000161863|YTHDC2	YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.63958740234375	2	344.639588	687.264624	1.4671	0.00050561	-3.2365	-0.0011154	-1.7694	-0.00060981	344.6393605174377	44.007	0.47521	44.007	43.778	44.253	0					43	25	3	0	0	0	0.61124	1	17177	17177		20.482	2.1574	1	198570			37448	1215	25717	25807	37906	37906					-0.09151783099207478
SPCIFHISF	9	Unmodified	_SPCIFHISF_					0	0	0		ENST00000547065.1_1_12:48238531-48272768:-|nuORF	ENST00000547065.1_1_12:48238531-48272768:-|nuORF	ENST00000547065.1_1_12:48238531-48272768:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7554321289062	2	525.757495	1049.50044	0.098386	5.1727E-05	-4.1572	-0.0021857	-4.0588	-0.0021339	525.7554045499227	22.157	0.31042	22.157	21.984	22.295	0					16	7	4	0	0	0	0.20551	1	7165	7165		60.972	0.85368	1	1611100			37449	10586	25718	25808	37907	37907					-0.022332709746024193
SPCLGLLSLF	10	Unmodified	_SPCLGLLSLF_					0	0	0			REV__ENSG00000172771|ENST00000505956|EFCAB12	REV__ENSG00000172771|ENST00000505956|EFCAB12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2902221679688	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.777	1	25.777	25.277	26.277	0								0	0	0	0.32041	1	8851	8851		47.657	5.1829	1		+		37450	16477	25719	25809	37908	37908					0.04036455373739045
SPCPAIRLS	9	Unmodified	_SPCPAIRLS_					0	0	0			REV__nc|ENSG00000115325|Q99704-3|DOK1	REV__nc|ENSG00000115325|Q99704-3|DOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.25506591796875	2	472.25512	942.495686	0.60971	0.00028794	-0.96787	-0.00045708	-0.35816	-0.00016914	472.25460284034943	29.821	0.902	29.821	29.392	30.294	0					27	18	2	0	0	0	0.48389	1	11017	11017		34.173	0	1	337460	+		37451	14107	25720	25810	37909	37909					0.022138448826240165
SPCSAACRW	9	Unmodified	_SPCSAACRW_					0	0	0		DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant	DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant	DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.70697021484375	2	490.707479	979.400406	-0.10176	-4.9934E-05	-1.4849	-0.00072865	-1.5867	-0.00077859	490.7067992369929	20.41	0.26937	20.41	20.265	20.535	0					11	6	2	0	0	0	0.41113	1	5718	5718		40.778	3.6191	1	136320			37452	774	25721	25811	37910	37910					-0.09011831580062335
SPCVLELAAPA	11	Unmodified	_SPCVLELAAPA_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.5220642089844	3	357.523204	1069.54778	-2.0261	-0.00072439	-1.04	-0.00037184	-3.0662	-0.0010962	357.5227965900049	23.072	0.14274	23.072	23.019	23.162	0					8	3	3	0	0	0	0.71641	1	6992	6992		26.063	4.3776	1	244160	+		37453	12879	25722	25812	37911	37911					0.01578963505721731
SPDAGHALLL	10	Unmodified	_SPDAGHALLL_					0	0	0			REV__ENSG00000272031|ENST00000606888|ANKRD34A	REV__ENSG00000272031|ENST00000606888|ANKRD34A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2727966308594	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.296	1	38.296	37.796	38.796	0								0	0	0	0.28441	1	12498	12498		53.351	3.9099	1		+		37454	17810	25723	25813	37912	37912					0.032531699261767244
SPDATIRIW	9	Unmodified	_SPDATIRIW_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7858276367188	2	529.785099	1057.55564	2.3216	0.00123	-0.68175	-0.00036118	1.6399	0.00086879	529.7847198261544	44.492	0.23571	44.492	44.373	44.608	0					22	14	2	0	0	0	0.12834	1	16657	16657		72.879	20.58	1	86280			37455	2613	25724	25814	37913	37913					0.029168588175025434
SPDATIRIW	9	Unmodified	_SPDATIRIW_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7858276367188	2	529.785099	1057.55564	0.7314	0.00038748	0.97234	0.00051513	1.7037	0.00090262	529.7857991517992	44.424	0.35323	44.424	44.273	44.626	0					23	14	2	0	0	0	0.026538	1	17780	17780		112.41	45.982	1	78343			37456	2613	25724	25814	37914	37914					0.029168588175025434
SPDATIRIW	9	Unmodified	_SPDATIRIW_					0	0	0		PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7846069335938	2	529.785099	1057.55564	1.63	0.00086354	-0.97224	-0.00051508	0.65773	0.00034846	529.7845166164233	44.449	0.5166	44.449	44.233	44.75	0					29	21	2	0	0	0	0.070005	1	17775	17775		88.177	35.24	1	156870			37457	2613	25724	25814	37915	37915					0.029168588175025434
SPDEKSVITY	10	Unmodified	_SPDEKSVITY_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7855834960938	2	569.784961	1137.55537	0.31429	0.00017908	0.34618	0.00019725	0.66047	0.00037633	569.7851079281703	31.777	0.41647	31.777	31.617	32.034	0					14	8	2	0	0	0	0.4287	1	11928	11928		53.089	1.8963	1	143240			37458	11514;854	25725	25815	37916	37916					-0.00790605692986901
SPDGRTYYY	9	Unmodified	_SPDGRTYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.2494506835938	2	561.248546	1120.48254	1.791	0.0010052	0.066568	3.7361E-05	1.8576	0.0010426	561.2486241136766	30.26	0.70335	30.26	29.972	30.675	0					28	17	2	0	0	0	0.27249	1	10900	10900		52.937	10.541	1	212820			37459	7371	25726	25816	37917	37917					-0.07288314695779263
SPDPLPVRY	9	Unmodified	_SPDPLPVRY_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE;nc|ENSG00000167280|Q8NFI3-2|ENGASE;ENGASE|p.T547Pfs*14|2|0.35|ENSG00000167280|chr17:79085275-79085275|C/-|frameshift_variant;ENGASE|p.T547Hfs*45|1|0.16|ENSG00000167280|chr17:79085274-79085275|-/C|frameshift_variant;ENGASE|p.S611Gfs*22|1|0.26|ENSG00000167280|chr17:79085943-79085950|CTGCCAGC/-|frameshift_variant;ENSG00000167280|ENST00000579016|ENGASE;ENGASE|p.D76N|1|0.37|ENSG00000167280|chr17:79077674-79077674|G/A|missense_variant	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.27978515625	2	522.279649	1042.54475	0.42391	0.0002214	0.32216	0.00016826	0.74608	0.00038966	522.2797917927445	36.269	0.36333	36.269	36.081	36.445	0					13	7	2	0	0	0	0.19605	1	14055	14055		62.107	29.295	1	236080			37460	11630	25727	25817	37918	37918					0.025174564432290936
SPDVNKIRK	9	Unmodified	_SPDVNKIRK_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.8115234375	2	528.811648	1055.60874	0.4686	0.0002478	0.16915	8.9448E-05	0.63775	0.00033725	528.8111942567907	13.77	0.061109	13.77	13.723	13.784	0					5	3	2	0	0	0	0.48389	1	2875	2875		34.173	0	1	63953			37461	5113	25728	25818	37919	37919					0.08316236600194316
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.8535461425781	3	350.853718	1049.53933	0.16664	5.8468E-05	-0.22068	-7.7426E-05	-0.054035	-1.8958E-05	350.8536001192294	21.915	0.26099	21.915	21.762	22.023	0					16	7	3	0	0	0	0.38666	1	6103	6103		42.864	6.4175	1	238330			37462	11470	25729	25819	37920	37920					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7772827148438	2	525.776939	1049.53933	0.64695	0.00034015	0.083684	4.3999E-05	0.73063	0.00038415	525.7769162959861	21.912	0.26099	21.912	21.762	22.023	0					16	7	3	0	0	0	0.019258	1	6115	6115		95.815	44.48	1	330610			37463	11470	25729	25819	37921	37921					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.85369873046875	3	350.853718	1049.53933	0.49586	0.00017397	-0.54511	-0.00019125	-0.049249	-1.7279E-05	350.8534883520236	22.205	0.41215	22.205	22.061	22.474	0					22	9	4	0	0	0	0.27249	1	7166	7166		52.937	15.429	1	3491200			37464	11470	25729	25819	37922	37922					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.777099609375	2	525.776939	1049.53933	0.098474	5.1775E-05	1.0749	0.00056518	1.1734	0.00061696	525.7777306281931	22.205	0.61811	22.205	21.766	22.384	0					29	14	5	0	0	0	0.0028263	1	7184	7184		154.12	43.998	1	2289800			37465	11470	25729	25819	37923	37923					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7774658203125	2	525.776939	1049.53933	0.50934	0.0002678	0.68095	0.00035803	1.1903	0.00062582	525.777200526608	21.941	0.2972	21.941	21.781	22.078	0					29	9	4	0	0	0	0.010427	1	6366	6366		124.08	36.384	1	861130			37466	11470	25729	25819	37924	37924					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7774658203125	2	525.776939	1049.53933	1.1871	0.00062414	-0.13022	-6.8466E-05	1.0569	0.00055567	525.7768527645519	21.995	0.41027	21.995	21.806	22.216	0					18	9	3	0	0	0	0.0063888	1	6464	6464		136.27	37.639	1	682450			37467	11470	25729	25819	37925	37925					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7772827148438	2	525.776939	1049.53933	1.6274	0.00085564	-1.0752	-0.0005653	0.5522	0.00029034	525.7762906281339	22.13	0.36729	22.13	21.919	22.287	0					23	7	4	0	0	0	0.001056	1	7299	7299		167.23	74.033	1	5724300			37468	11470	25729	25819	37926	37926					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7774047851562	2	525.776939	1049.53933	3.4522	0.0018151	-2.5405	-0.0013357	0.91168	0.00047934	525.7755495414734	22.113	0.71731	22.113	21.603	22.321	0					35	14	4	0	0	0	0.0079272	1	7291	7291		129.42	44.26	1	7380100			37469	11470	25729	25819	37927	37927					0.016537328607682866
SPEDIKKAY	9	Unmodified	_SPEDIKKAY_					0	0	0		nc|ENSG00000105993|O75190-3|DNAJB6;DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant;DNAJB7|p.A14V|1|0.08|ENSG00000172404|chr22:40861954-40861954|G/A|missense_variant;DNAJB6|p.R24W|1|0.27|ENSG00000105993|chr7:157363165-157363165|C/T|missense_variant;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;nc|ENSG00000105993|O75190-2|DNAJB6;ENSG00000172404|ENST00000307221|DNAJB7;ENSG00000105993|ENST00000262177|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	nc|ENSG00000105993|O75190-3|DNAJB6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8537292480469	3	350.853718	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.093	1	22.093	21.593	22.593	0								0	0	0	0.15687	1	7295	7295		58.23	0.41864	1				37470	11470	25729	25819	37928	37928					0.016537328607682866
SPEEDCPMNES	11	Unmodified	_SPEEDCPMNES_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	619.2205200195312	2	619.22101	1236.42747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.923	1	11.923	11.423	12.423	0								0	0	0	0.45674	1	2401	2401		16.717	2.5803	1		+		37471	16937	25730	25820	37929	37929					-0.1812885734086649
SPEEGARVY	9	Unmodified	_SPEEGARVY_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENST00000587715.1_1_19:55598611-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;EPS8L1|p.A674V|1|0.11|ENSG00000131037|chr19:55087371-55087371|C/T|missense_variant	ENSG00000131037|ENST00000201647|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.24371337890625	2	504.243264	1006.47197	1.7021	0.00085828	-1.057	-0.00053299	0.64509	0.00032528	504.24281850302714	23.501	0.16963	23.501	23.416	23.586	0					14	6	3	0	0	0	0.021961	1	6803	6803		118.74	36.438	1	212790			37472	3692	25731	25821	37930	37930					-0.031002973501813358
SPEEGARVY	9	Unmodified	_SPEEGARVY_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENST00000587715.1_1_19:55598611-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;EPS8L1|p.A674V|1|0.11|ENSG00000131037|chr19:55087371-55087371|C/T|missense_variant	ENSG00000131037|ENST00000201647|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2430725097656	2	504.243264	1006.47197	0.639	0.00032221	-0.7743	-0.00039044	-0.1353	-6.8223E-05	504.24286612242526	23.811	0.33634	23.811	23.704	24.041	0					19	7	4	0	0	0	2.7024E-05	1	7920	7920		201.49	81.931	1	1317000			37473	3692	25731	25821	37931	37931					-0.031002973501813358
SPEEGARVY	9	Unmodified	_SPEEGARVY_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENST00000587715.1_1_19:55598611-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;EPS8L1|p.A674V|1|0.11|ENSG00000131037|chr19:55087371-55087371|C/T|missense_variant	ENSG00000131037|ENST00000201647|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2431640625	2	504.243264	1006.47197	0.097318	4.9072E-05	0.077375	3.9016E-05	0.17469	8.8088E-05	504.24332200837097	23.72	0.36703	23.72	23.612	23.979	0					20	7	4	0	0	0	0.0071053	1	8200	8200		148.99	37.339	1	2698000			37474	3692	25731	25821	37932	37932					-0.031002973501813358
SPEEGARVY	9	Unmodified	_SPEEGARVY_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENST00000587715.1_1_19:55598611-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;EPS8L1|p.A674V|1|0.11|ENSG00000131037|chr19:55087371-55087371|C/T|missense_variant	ENSG00000131037|ENST00000201647|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2430419921875	2	504.243264	1006.47197	-0.035596	-1.7949E-05	-0.39234	-0.00019783	-0.42794	-0.00021578	504.24305319331376	23.582	0.1014	23.582	23.526	23.627	0					4	2	2	0	0	0	0.07136	1	7231	7231		87.696	26.724	1	86662			37475	3692	25731	25821	37933	37933					-0.031002973501813358
SPEEGARVY	9	Unmodified	_SPEEGARVY_					0	0	0		ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENST00000587715.1_1_19:55598611-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;EPS8L1|p.A674V|1|0.11|ENSG00000131037|chr19:55087371-55087371|C/T|missense_variant	ENSG00000131037|ENST00000201647|EPS8L1	ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.24310302734375	2	504.243264	1006.47197	-0.37832	-0.00019077	0.32749	0.00016514	-0.050831	-2.5631E-05	504.2434640409563	23.736	0.2121	23.736	23.634	23.846	0					13	4	4	0	0	0	0.0406	1	8103	8103		98.629	27.334	1	715280			37476	3692	25731	25821	37934	37934					-0.031002973501813358
SPEELARKY	9	Unmodified	_SPEELARKY_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.8609619140625	3	364.860984	1091.56112	0.7461	0.00027222	-0.64526	-0.00023543	0.10084	3.6792E-05	364.86071115635053	24.788	0.54026	24.788	24.49	25.03	0					32	13	3	0	0	0	0.1424	1	8385	8385		69.628	14.905	1	715450			37477	929	25732	25822	37935	37935					0.01900537609321873
SPEELARKY	9	Unmodified	_SPEELARKY_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7879638671875	2	546.787838	1091.56112	0.46491	0.00025421	0.15982	8.7387E-05	0.62473	0.0003416	546.7874909536661	24.524	0.24883	24.524	24.435	24.683	0					15	8	2	0	0	0	0.14578	1	7531	7531		44.377	6.5657	1	96000			37478	929	25732	25822	37936	37936					0.01900537609321873
SPEELARKY	9	Unmodified	_SPEELARKY_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7880249023438	2	546.787838	1091.56112	1.9055	0.0010419	0.040886	2.2356E-05	1.9464	0.0010643	546.7872210496713	24.763	0.55002	24.763	24.364	24.914	0					30	11	4	0	0	0	0.061298	1	8597	8597		85.161	31.809	1	930420			37479	929	25732	25822	37937	37937					0.01900537609321873
SPEEQAKTY	9	Unmodified	_SPEEQAKTY_					0	0	0		ENSG00000243725|ENST00000371281|TTC4;TTC4|p.D84G|1|0.21|ENSG00000243725|chr1:54717513-54717513|A/G|missense_variant;ENST00000486621.1_1_1:55181548-55183334:+|nuORF	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.748779296875	2	526.748379	1051.4822	2.0597	0.0010849	-1.1054	-0.00058225	0.95432	0.00050269	526.7478313989842	20.36	0.25193	20.36	20.241	20.493	0					16	5	4	0	0	0	0.014413	1	6313	6313		131.62	59.739	1	498590			37480	7958	25733	25823	37938	37938					-0.0414773441559646
SPEEQAKTY	9	Unmodified	_SPEEQAKTY_					0	0	0		ENSG00000243725|ENST00000371281|TTC4;TTC4|p.D84G|1|0.21|ENSG00000243725|chr1:54717513-54717513|A/G|missense_variant;ENST00000486621.1_1_1:55181548-55183334:+|nuORF	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7489624023438	2	526.748379	1051.4822	0.39371	0.00020739	0.43648	0.00022991	0.83019	0.0004373	526.7484395453073	20.061	0.15238	20.061	19.976	20.128	0					11	5	3	0	0	0	0.035062	1	5539	5539		104.06	41.949	1	140920			37481	7958	25733	25823	37939	37939					-0.0414773441559646
SPEEQAKTY	9	Unmodified	_SPEEQAKTY_					0	0	0		ENSG00000243725|ENST00000371281|TTC4;TTC4|p.D84G|1|0.21|ENSG00000243725|chr1:54717513-54717513|A/G|missense_variant;ENST00000486621.1_1_1:55181548-55183334:+|nuORF	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.748779296875	2	526.748379	1051.4822	1.6279	0.00085752	-0.72104	-0.0003798	0.90691	0.00047771	526.7480438579545	20.285	0.31554	20.285	20.128	20.443	0					13	6	3	0	0	0	0.11411	1	6433	6433		76.17	38.358	1	922560			37482	7958	25733	25823	37940	37940					-0.0414773441559646
SPEGAVGRSL	10	Unmodified	_SPEGAVGRSL_					0	0	0		nc|ENSG00000105612|O00115-2|DNASE2;ENSG00000105612|ENST00000222219|DNASE2	nc|ENSG00000105612|O00115-2|DNASE2	nc|ENSG00000105612|O00115-2|DNASE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7610168457031	2	486.759081	971.503609	2.5347	0.0012338	1.1436	0.00055666	3.6783	0.0017904	486.759648465515	38.103	0.29015	38.103	37.961	38.251	0					12	6	2	0	0	0	0.28675	1	14945	14945		68.846	2.4169	1	449100			37483	2374	25734	25824	37941	37941					0.016716954037633514
SPEGLKVFY	9	Unmodified	_SPEGLKVFY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2760620117188	2	520.276575	1038.5386	0.33112	0.00017227	0.34674	0.0001804	0.67786	0.00035267	520.2768273420205	41.614	0.17355	41.614	41.53	41.703	0					7	4	2	0	0	0	0.028876	1	16556	16556		110.12	25.204	1	63087			37484	1705	25735	25825	37942	37942					0.020869382117098212
SPEGRLYQVEY	11	Unmodified	_SPEGRLYQVEY_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000556167.1_1_14:35761682-35777333:+|nuORF;ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6	ENSG00000041357|ENST00000044462|PSMA4;ENSG00000100902|ENST00000261479|PSMA6	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	670.8274536132812	2	670.827692	1339.64083	2.5219	0.0016918	-2.3281	-0.0015617	0.19383	0.00013003	670.8259537153905	37.002	0.25673	37.002	36.897	37.154	0					14	5	3	0	0	0	0.33002	1	14442	14442		59.265	21.453	1	434090			37485	1193;2072	25736	25826	37943	37943					-0.015404405073468297
SPELAKAALL	10	Unmodified	_SPELAKAALL_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.80548095703125	2	506.8055	1011.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.139	1	33.139	32.639	33.639	0								0	0	0	0.38467	1	10753	10753		30.318	3.6248	1		+		37486	14612	25737	25827	37944	37944					0.0911120013714708
SPELPKPHLP	10	Unmodified	_SPELPKPHLP_					0	0	0		nc|ENSG00000038532|Q2KHT3-3|CLEC16A;ENST00000261657.5_1_16:11260358-11272544:+|nuORF;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-3|CLEC16A	nc|ENSG00000038532|Q2KHT3-3|CLEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.2134094238281	3	372.213358	1113.61824	0.78244	0.00029123	-0.94677	-0.0003524	-0.16433	-6.1166E-05	372.2130220321652	38.393	0.14051	38.393	38.333	38.474	0					7	4	2	0	0	0	0.72821	1	14584	14584		16.717	0	1	107790			37487	1184	25738	25828	37945	37945					0.06598004885699993
SPEPGQRTF	9	Unmodified	_SPEPGQRTF_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7511291503906	2	509.751256	1017.48796	0.94711	0.00048279	-0.75195	-0.00038331	0.19516	9.9482E-05	509.7508946601562	23.935	0.2876	23.935	23.736	24.024	0					11	6	3	0	0	0	0.1424	1	7982	7982		69.628	11.816	1	366870			37488	5165	25739	25829	37946	37946					-0.020085911132809997
SPEPGQRTF	9	Unmodified	_SPEPGQRTF_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7511901855469	2	509.751256	1017.48796	0.26802	0.00013662	-0.24	-0.00012234	0.028016	1.4281E-05	509.75122324876895	23.872	0.36703	23.872	23.612	23.979	0					15	7	3	0	0	0	0.078509	1	8273	8273		85.161	33.825	1	222110			37489	5165	25739	25829	37947	37947					-0.020085911132809997
SPEPGQRTF	9	Unmodified	_SPEPGQRTF_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.75115966796875	2	509.751256	1017.48796	-0.028367	-1.446E-05	0.069343	3.5348E-05	0.040976	2.0887E-05	509.75137128008896	23.837	0.4624	23.837	23.634	24.096	0					17	9	3	0	0	0	0.13726	1	8153	8153		70.816	15.312	1	363030			37490	5165	25739	25829	37948	37948					-0.020085911132809997
SPEPSPLPR	9	Unmodified	_SPEPSPLPR_					0	0	0		ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.17828369140625	3	327.178425	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.471	1	16.471	15.971	16.971	0								0	0	0	0.38667	1	3754	3754		14.865	1.9057	1				37491	8626	25740	25830	37949	37949					0.02332883409144415
SPERSYVF	8	Unmodified	_SPERSYVF_					0	0	0		nc|ENSG00000156194|O14830-2|PPEF2;ENSG00000156194|ENST00000286719|PPEF2	nc|ENSG00000156194|O14830-2|PPEF2	nc|ENSG00000156194|O14830-2|PPEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.74261474609375	2	492.742899	983.471246	-0.018189	-8.9626E-06	-0.7308	-0.0003601	-0.74899	-0.00036906	492.7424680129449	29.449	0.33065	29.449	29.297	29.628	0					12	8	2	0	0	0	0.66372	1	9889	9889		38.806	1.647	1	67518			37492	5160	25741	25831	37950	37950					-0.02115091999235119
SPFATTTKY	9	Unmodified	_SPFATTTKY_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2584533691406	2	508.258382	1014.50221	0.91302	0.00046405	-0.65713	-0.00033399	0.25589	0.00013006	508.2582523903751	29.342	0.19552	29.342	29.236	29.432	0					11	7	2	0	0	0	0.21263	1	9246	9246		60.118	14.166	1	92173			37493	3621	25742	25832	37951	37951					-0.004459386850044211
SPFATTTKY	9	Unmodified	_SPFATTTKY_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2584228515625	2	508.258382	1014.50221	0.90473	0.00045984	0.23283	0.00011834	1.1376	0.00057818	508.2580110853682	29.603	0.33821	29.603	29.485	29.823	0					28	8	5	0	0	0	0.056004	1	10587	10587		93.143	32.171	1	527810			37494	3621	25742	25832	37952	37952					-0.004459386850044211
SPFATTTKY	9	Unmodified	_SPFATTTKY_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2585144042969	2	508.258382	1014.50221	-0.097551	-4.9581E-05	1.9149	0.00097326	1.8173	0.00092368	508.25879593413043	29.573	0.30667	29.573	29.408	29.715	0					18	6	4	0	0	0	0.056004	1	10827	10827		93.143	45.486	1	406210			37495	3621	25742	25832	37953	37953					-0.004459386850044211
SPFFLALLMAT	11	Unmodified	_SPFFLALLMAT_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.8307495117188	2	605.83066	1209.64677	1.5717	0.00095221	-1.2026	-0.00072855	0.36918	0.00022366	605.8301252282121	24.586	0.19056	24.586	24.474	24.664	0					13	5	3	0	0	0	0.7326	1	7271	7271		24.519	3.5723	1	92187			37496	8499	25743	25833	37954	37954					0.050329864706100125
SPFKADIEM	9	Unmodified	_SPFKADIEM_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2520751953125	2	519.252243	1036.48993	0.29244	0.00015185	-0.2555	-0.00013267	0.036937	1.918E-05	519.2520949379119	38.945	0.39528	38.945	38.746	39.141	0					17	8	4	0	0	0	0.10915	1	15338	15338		77.318	10.888	1	524050			37497	4052	25744	25834	37955	37955					-0.02685298419692117
SPFRVLRL	8	Unmodified	_SPFRVLRL_					0	0	0			REV__ENST00000433867.5_3_19:47219703-47220288:-|nuORF	REV__ENST00000433867.5_3_19:47219703-47220288:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.30682373046875	2	494.308544	986.602535	0.66472	0.00032857	-3.1866	-0.0015752	-2.5219	-0.0012466	494.30727573390965	42.238	0.1371	42.238	42.188	42.325	0					9	6	2	0	0	0	0.61938	1	16581	16581		45.952	5.1738	1	90435	+		37498	19188	25745	25835	37956	37956					0.10869763159325885
SPFTVKVTG	9	Unmodified	_SPFTVKVTG_					0	0	0		FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2635498046875	2	468.263468	934.512382	-1.0858	-0.00050843	0.33636	0.0001575	-0.74943	-0.00035093	468.2635673489494	37.209	0.21376	37.209	37.132	37.345	0					17	11	2	0	0	0	0.17854	1	12576	12576		64.207	0	1	190280			37499	3551	25746	25836	37957	37957					0.04250669040243338
SPFYPGKTTY	10	Unmodified	_SPFYPGKTTY_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153;NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant;NUP153|p.N411Ifs*2|1|0.17|ENSG00000124789|chr6:17662054-17662054|T/-|frameshift_variant;NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.7847900390625	2	580.784764	1159.55498	1.3814	0.00080231	-0.90395	-0.000525	0.47748	0.00027731	580.7842178244828	33.795	0.35054	33.795	33.62	33.971	0					15	9	2	0	0	0	0.50287	1	12519	12519		45.022	2.6261	1	162860			37500	11866	25747	25837	37958	37958					-0.018419806221800172
SPFYPGKTTY	10	Unmodified	_SPFYPGKTTY_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153;NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant;NUP153|p.N411Ifs*2|1|0.17|ENSG00000124789|chr6:17662054-17662054|T/-|frameshift_variant;NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.7850952148438	2	580.784764	1159.55498	0.13085	7.5994E-05	1.194	0.00069348	1.3249	0.00076947	580.7854922453872	33.708	0.3743	33.708	33.549	33.924	0					14	8	2	0	0	0	0.27065	1	12830	12830		70.816	19.481	1	191200			37501	11866	25747	25837	37959	37959					-0.018419806221800172
SPGFEIHLT	9	Unmodified	_SPGFEIHLT_					0	0	0		TMC7|p.R441H|1|0.4|ENSG00000170537|chr16:19040431-19040431|G/A|missense_variant	TMC7|p.R441H|1|0.4|ENSG00000170537|chr16:19040431-19040431|G/A|missense_variant	TMC7|p.R441H|1|0.4|ENSG00000170537|chr16:19040431-19040431|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2666320800781	2	500.758549	999.502546	2.9223	0.0014634	-2.0736	-0.0010384	0.84869	0.00042499	500.75691370695523	26.679	0.87181	26.679	26.417	27.289	0					46	17	5	0	0	0	0.26904	1	9417	9417		53.351	2.016	1	8961600			37502	22544	25748	25838	37960	37960					0.002774810348455503
SPGGDRRRRP	10	Unmodified	_SPGGDRRRRP_					0	0	0		ENST00000286523.9_2_14:74206798-74226821:-|nuORF	ENST00000286523.9_2_14:74206798-74226821:-|nuORF	ENST00000286523.9_2_14:74206798-74226821:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.31982421875	2	577.318494	1152.62244	1.7091	0.0009867	0.88837	0.00051287	2.5975	0.0014996	577.3189909559951	24.574	0.26238	24.574	24.414	24.676	0					13	5	3	0	0	0	0.43708	1	8487	8487		40.058	18.098	1	716520			37503	8426	25749	25839	37961	37961					0.05222907151983236
SPGPGLLLQ	9	Unmodified	_SPGPGLLLQ_					0	0	0			REV__ENSG00000172482|ENST00000307503|AGXT	REV__ENSG00000172482|ENST00000307503|AGXT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.25775146484375	2	441.258185	880.501818	-0.28663	-0.00012648	-0.99933	-0.00044096	-1.286	-0.00056744	441.2578028302774	40.05	0.18136	40.05	39.993	40.175	0					13	10	2	0	0	0	0.47038	1	12972	12972		35.618	5.1146	1	130750	+		37504	16468	25750	25840	37962	37962					0.05678686385817855
SPHASTGFI	9	Unmodified	_SPHASTGFI_					0	0	0			REV__ENSG00000158008|ENST00000374280|EXTL1	REV__ENSG00000158008|ENST00000374280|EXTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7293395996094	2	458.729792	915.445031	-0.96453	-0.00044246	0.25761	0.00011817	-0.70692	-0.00032429	458.7298015136046	24.841	0.32449	24.841	24.648	24.973	0					18	11	2	0	0	0	0.23186	1	7641	7641		57.811	0	1	219210	+		37505	15673	25751	25841	37963	37963					-0.016073611707156488
SPHGGALVM	9	Unmodified	_SPHGGALVM_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7206726074219	2	434.720913	867.427273	-0.26977	-0.00011728	-0.60373	-0.00026246	-0.87351	-0.00037973	434.72080263225666	27.465	0.37303	27.465	27.345	27.718	0					36	12	5	0	0	0	0.49003	1	8439	8439		33.516	9.3128	1	1822700			37506	5738	25752	25842	37964	37964					-0.011743996972313653
SPHGGALVM	9	Unmodified	_SPHGGALVM_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7207946777344	2	434.720913	867.427273	0.35575	0.00015465	-1.2922	-0.00056175	-0.93645	-0.00040709	434.7205266127949	27.739	0.77897	27.739	27.586	28.365	0					42	16	5	0	0	0	0.097811	1	10069	10069		79.939	33.987	1	9201400			37507	5738	25752	25842	37965	37965					-0.011743996972313653
SPHGGALVM	9	Oxidation (M)	_SPHGGALVM(Oxidation (M))_		SPHGGALVM(1)		SPHGGALVM(50)	0	0	1		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.7176208496094	2	442.71837	883.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.36	1	20.36	19.86	20.86	0								0	0	0	0.20652	1	5435	5435		50.025	18.07	1				37508	5738	25752	25843	37966	37966		234			-0.024187035598401962
SPHGGALVM	9	Oxidation (M)	_SPHGGALVM(Oxidation (M))_		SPHGGALVM(1)		SPHGGALVM(48)	0	0	1		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7182312011719	2	442.71837	883.422187	-0.34246	-0.00015161	-0.34049	-0.00015074	-0.68295	-0.00030236	442.71832823657485	20.693	0.29798	20.693	20.594	20.892	0					12	6	2	0	0	0	0.32741	1	6473	6473		47.916	12.297	1	446010			37509	5738	25752	25843	37967	37967		234			-0.024187035598401962
SPHKGSYLY	9	Unmodified	_SPHKGSYLY_					0	0	0		ENST00000562145.1_1_16:74748090-74750623:-|nuORF;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENSG00000103089|ENST00000219368|FA2H	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2643432617188	2	526.263999	1050.51345	0.45435	0.00023911	-0.32899	-0.00017314	0.12536	6.5971E-05	526.2637987214342	22.571	0.30623	22.571	22.47	22.776	0					20	10	3	0	0	0	0.4966	1	6670	6670		32.812	2.3088	1	255710			37510	2212	25753	25844	37968	37968					-0.009791165908382027
SPHKGSYLY	9	Unmodified	_SPHKGSYLY_					0	0	0		ENST00000562145.1_1_16:74748090-74750623:-|nuORF;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENSG00000103089|ENST00000219368|FA2H	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2642822265625	2	526.263999	1050.51345	1.7665	0.00092966	-1.1306	-0.00059501	0.6359	0.00033465	526.2633558501117	22.751	0.71159	22.751	22.501	23.212	0					26	14	2	0	0	0	0.28897	1	7758	7758		51.193	8.7966	1	1541100			37511	2212	25753	25844	37969	37969					-0.009791165908382027
SPHKGSYLY	9	Unmodified	_SPHKGSYLY_					0	0	0		ENST00000562145.1_1_16:74748090-74750623:-|nuORF;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENSG00000103089|ENST00000219368|FA2H	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.26416015625	2	526.263999	1050.51345	0.60395	0.00031784	-0.056741	-2.9861E-05	0.54721	0.00028798	526.2639040799496	22.747	0.71432	22.747	22.638	23.352	0					24	14	2	0	0	0	0.10915	1	7621	7621		77.318	25.982	1	1383900			37512	2212	25753	25844	37970	37970					-0.009791165908382027
SPHKGSYLY	9	Unmodified	_SPHKGSYLY_					0	0	0		ENST00000562145.1_1_16:74748090-74750623:-|nuORF;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENSG00000103089|ENST00000219368|FA2H	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2643432617188	2	526.263999	1050.51345	1.6276	0.00085656	-0.93667	-0.00049293	0.69097	0.00036363	526.2634856662285	22.782	0.71329	22.782	22.521	23.235	0					36	14	3	0	0	0	0.15163	2	7614	7614;7664		67.494	14.557	1	2009200			37513	2212	25753	25844	37971;37972	37971					-0.009791165908382027
SPHLMSKKL	9	Unmodified	_SPHLMSKKL_					0	0	0			REV__DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant	REV__DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7994995117188	2	520.799694	1039.58484	1.0216	0.00053204	-0.88735	-0.00046213	0.13423	6.9908E-05	520.7991363892892	11.633	0.071072	11.633	11.603	11.674	0					4	2	2	0	0	0	0.61124	1	2225	2225		7.6903	0	1	62902	+		37514	12743	25754	25845	37973	37973					0.06662679842156649
SPHLPSVY	8	Unmodified	_SPHLPSVY_					0	0	0			REV__SIGLEC7|p.S188Y|1|0.34|ENSG00000168995|chr19:51144535-51144535|C/A|missense_variant	REV__SIGLEC7|p.S188Y|1|0.34|ENSG00000168995|chr19:51144535-51144535|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.234619140625	2	450.23471	898.454868	-1.1851	-0.00053357	0.68089	0.00030656	-0.5042	-0.00022701	450.23501658848363	33.309	0.25605	33.309	33.21	33.466	0					16	10	2	0	0	0	0.75243	1	11167	11167		26.796	1.3459	1	102980	+		37515	21517	25755	25846	37974	37974					0.001578268346634104
SPHPGPLP	8	Unmodified	_SPHPGPLP_					0	0	0			REV__PSD|p.R334W|1|0.39|ENSG00000059915|chr10:102414987-102414987|G/A|missense_variant	REV__PSD|p.R334W|1|0.39|ENSG00000059915|chr10:102414987-102414987|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.2164306640625	2	401.216321	800.418088	-0.09511	-3.816E-05	-0.11191	-4.4902E-05	-0.20702	-8.3062E-05	401.2162899729269	29.898	0.84316	29.898	29.577	30.42	0					77	32	3	0	0	0	0.74117	1	9388	9388		28.254	0	1	827850	+		37516	13078	25756	25847	37975	37975					0.009895750087707711
SPHPGPLP	8	Unmodified	_SPHPGPLP_					0	0	0			REV__PSD|p.R334W|1|0.39|ENSG00000059915|chr10:102414987-102414987|G/A|missense_variant	REV__PSD|p.R334W|1|0.39|ENSG00000059915|chr10:102414987-102414987|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2162170410156	2	401.216321	800.418088	-0.39612	-0.00015893	0.19579	7.8554E-05	-0.20033	-8.0377E-05	401.2163961294028	30.243	1.2376	30.243	29.762	30.999	0					79	30	4	0	0	0	0.67475	1	10762	10762		37.028	0	1	4315400	+		37517	13078	25756	25847	37976	37976					0.009895750087707711
SPHPPGPL	8	Unmodified	_SPHPPGPL_					0	0	0			REV__ENST00000336576.9_2_2:220149801-220149909:+|nuORF	REV__ENST00000336576.9_2_2:220149801-220149909:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.2162170410156	2	401.216321	800.418088	-0.09511	-3.816E-05	-0.11191	-4.4902E-05	-0.20702	-8.3062E-05	401.2162899729269	29.898	0.84316	29.898	29.577	30.42	0					77	32	3	0	0	0	0.55361	1	9526	9526		54.765	0	1	827850	+		37518	18269	25757	25848	37977	37977					0.009895750087707711
SPHSFLKWR	9	Unmodified	_SPHSFLKWR_					0	0	0			REV__KLHL1|p.L143Wfs*32|1|0.54|ENSG00000150361|chr13:70107277-70107277|T/-|frameshift_variant	REV__KLHL1|p.L143Wfs*32|1|0.54|ENSG00000150361|chr13:70107277-70107277|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.5448913574219	3	386.545331	1156.61416	-1.1845	-0.00045787	-0.39935	-0.00015437	-1.5839	-0.00061224	386.5452303028319	25.601	0.10465	25.601	25.562	25.667	0					5	3	2	0	0	0	0.53083	1	7985	7985		22.58	0	1	61237	+		37519	15443	25758	25849	37978	37978					0.04211960182669827
SPHTGIQEY	9	Unmodified	_SPHTGIQEY_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2430419921875	2	516.243264	1030.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.847	1	24.847	24.347	25.347	0								0	0	0	0.091069	1	7654	7654		74.255	10.949	1				37520	2278	25759	25850	37979	37979					-0.04204297350179331
SPIDVVEKY	9	Unmodified	_SPIDVVEKY_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2796630859375	2	525.279315	1048.54408	1.8963	0.00099609	-0.32743	-0.00017199	1.5689	0.0008241	525.2790707230481	39.665	0.35623	39.665	39.504	39.861	0					27	14	2	0	0	0	0.15558	1	15094	15094		66.962	12.24	1	172900			37521	3024	25760	25851	37980	37980					0.02174617003538515
SPIDVVEKY	9	Unmodified	_SPIDVVEKY_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2815551757812	2	525.279315	1048.54408	1.1696	0.00061437	2.409	0.0012654	3.5786	0.0018798	525.280672544786	39.52	0.17727	39.52	39.437	39.614	0					15	9	2	0	0	0	0.34452	1	14076	14076		46.457	5.0302	1	39895			37522	3024	25760	25851	37981	37981					0.02174617003538515
SPIDVVEKY	9	Unmodified	_SPIDVVEKY_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.279541015625	2	525.279315	1048.54408	1.6273	0.00085478	0.2579	0.00013547	1.8852	0.00099025	525.2790349553592	39.664	0.76883	39.664	39.202	39.971	0					47	17	4	0	0	0	0.019258	1	15635	15635		123.21	21.955	1	656490			37523	3024	25760	25851	37982	37982					0.02174617003538515
SPIDVVEKY	9	Unmodified	_SPIDVVEKY_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2797241210938	2	525.279315	1048.54408	3.4463	0.0018102	-1.7112	-0.00089887	1.735	0.00091138	525.2779717405485	39.608	1.2926	39.608	39.049	40.342	0					66	29	4	0	0	0	0.11411	1	15666	15666		76.17	12.636	1	676400			37524	3024	25760	25851	37983	37983					0.02174617003538515
SPIFATRILQ	10	Unmodified	_SPIFATRILQ_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.56182861328125	3	382.560758	1144.66044	3.2295	0.0012355	-0.58935	-0.00022546	2.6401	0.00101	382.5606458565635	20.366	0.51539	20.366	20.06	20.575	0					24	7	6	0	0	0	0.60281	1	6447	6447		25.892	0	1	3903400	+		37525	22199	25761	25852	37984	37984					0.0938998029407685
SPIHVDRVE	9	Unmodified	_SPIHVDRVE_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.28515625	2	526.28018	1050.54581	0.46534	0.0002449	-1.2745	-0.00067077	-0.80921	-0.00042587	526.2796529159596	35.825	0.19979	35.825	35.712	35.912	0					12	9	2	0	0	0	0.42902	1	12089	12089		39.253	0.44669	1	44276	+		37526	13220	25762	25853	37985	37985					0.022556708121328484
SPIISKPKP	9	Unmodified	_SPIISKPKP_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.8022766113281	2	483.80276	965.590967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.788	1	30.788	30.288	31.288	0								0	0	0	0.18541	1	11545	11545		53.089	0.15226	1				37527	6249	25763	25854	37986	37986					0.10679521345332432
SPILCTEPTP	10	Unmodified	_SPILCTEPTP_					0	0	0		ENST00000006053.6_2_16:57417370-57417550:+|nuORF	ENST00000006053.6_2_16:57417370-57417550:+|nuORF	ENST00000006053.6_2_16:57417370-57417550:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2661743164062	2	529.26535	1056.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.828	1	26.828	26.328	27.328	0								0	0	0	0.41253	1	8481	8481		26.693	3.6504	1				37528	8138	25764	25855	37987	37987					-0.009850292482042278
SPILGNYR	8	Unmodified	_SPILGNYR_					0	0	0		LDOC1|p.D117N|1|0.18|ENSG00000182195|chrX:141176673-141176673|C/T|missense_variant	LDOC1|p.D117N|1|0.18|ENSG00000182195|chrX:141176673-141176673|C/T|missense_variant	LDOC1|p.D117N|1|0.18|ENSG00000182195|chrX:141176673-141176673|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.25537109375	2	460.253434	918.492316	-0.45458	-0.00020922	-0.29183	-0.00013431	-0.74641	-0.00034354	460.2533818930181	27.67	1.0184	27.67	27.357	28.375	0					52	20	6	0	0	0	0.75243	1	9894	9894		26.796	1.3459	1	8694300			37529	11312	25765	25856	37988	37988					0.029809181002860896
SPISQKIIY	9	Unmodified	_SPISQKIIY_					0	0	0		nc|ENSG00000000971|P08603-2|CFH;CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant;ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.Q859Hfs*22|1|0.05|ENSG00000000971|chr1:196736986-196736987|-/TAATTGTATTT|frameshift_variant;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH	nc|ENSG00000000971|P08603-2|CFH	nc|ENSG00000000971|P08603-2|CFH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8058471679688	2	524.8055	1047.59645	1.8567	0.00097441	-1.2556	-0.00065897	0.60107	0.00031545	524.804958162498	35.607	0.30615	35.607	35.495	35.801	0					16	8	3	0	0	0	0.30841	1	13360	13360		49.536	8.7579	1	233930			37530	496	25766	25857	37989	37989					0.07455200137133033
SPISQKIIY	9	Unmodified	_SPISQKIIY_					0	0	0		nc|ENSG00000000971|P08603-2|CFH;CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant;ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.Q859Hfs*22|1|0.05|ENSG00000000971|chr1:196736986-196736987|-/TAATTGTATTT|frameshift_variant;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH	nc|ENSG00000000971|P08603-2|CFH	nc|ENSG00000000971|P08603-2|CFH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.80615234375	2	524.8055	1047.59645	0.54129	0.00028407	0.13245	6.9508E-05	0.67373	0.00035358	524.8057191186399	35.496	0.27239	35.496	35.381	35.654	0					12	5	3	0	0	0	0.27249	1	13716	13716		52.937	5.2794	1	325240			37531	496	25766	25857	37990	37990					0.07455200137133033
SPKDIGAPI	9	Unmodified	_SPKDIGAPI_					0	0	0			REV__ENST00000369724.4_1_6:83904036-83904183:+|nuORF	REV__ENST00000369724.4_1_6:83904036-83904183:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2557373046875	2	449.255643	896.496732	-0.093011	-4.1786E-05	0.401	0.00018015	0.30799	0.00013836	449.25592837753015	41.399	0.20367	41.399	41.322	41.526	0					12	8	2	0	0	0	0.35045	1	16281	16281		45.952	0	1	73638	+		37532	18625	25767	25858	37991	37991					0.04434382523197655
SPKFLHKNL	9	Unmodified	_SPKFLHKNL_					0	0	0			REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.2164611816406	3	361.881831	1082.62366	-0.9392	-0.00033988	1.2395	0.00044854	0.30028	0.00010866	362.2164967721821	20.007	0.1575	20.007	19.906	20.064	0					6	5	2	0	0	0	0.56424	1	5528	5528		25.574	3.6142	1	54379	+		37533	12984	25768	25859	37992	37992					0.08565728468170164
SPKILITT	8	Unmodified	_SPKILITT_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7748718261719	2	436.776211	871.537869	-0.7792	-0.00034034	-1.8186	-0.00079434	-2.5978	-0.0011347	436.77516996536116	51.689	0.14585	51.689	51.64	51.786	0					11	9	2	0	0	0	0.77246	1	15947	15947		24.203	5.8783	1	68050			37534	3020	25769	25860	37993	37993					0.0969614356264401
SPKPTSGK	8	Unmodified	_SPKPTSGK_					0	0	0		KCNN3|p.P217Rfs*67|1|0.27|ENSG00000143603|chr1:154869315-154869315|G/-|frameshift_variant	KCNN3|p.P217Rfs*67|1|0.27|ENSG00000143603|chr1:154869315-154869315|G/-|frameshift_variant	KCNN3|p.P217Rfs*67|1|0.27|ENSG00000143603|chr1:154869315-154869315|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.22698974609375	2	401.226885	800.439217	-1.3317	-0.0005343	1.493	0.00059903	0.16133	6.4731E-05	401.2276157279397	14.7	0.06365	14.7	14.67	14.734	0					4	2	2	0	0	0	0.66372	1	3235	3235		38.806	0	1	86347			37535	11247	25770	25861	37994	37994					0.03101540317618401
SPKSMPKDAQM	11	2 Oxidation (M)	_SPKSM(Oxidation (M))PKDAQM(Oxidation (M))_		SPKSM(1)PKDAQM(1)		SPKSM(60)PKDAQM(60)	0	0	2		ENSG00000273841|ENST00000217893|TAF9;TAF9|p.I28Lfs*9|1|0.43|ENSG00000273841|chr5:69365656-69365656|T/-|frameshift_variant	ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	626.2913818359375	2	626.28903	1250.56351	3.1822	0.001993	0.27372	0.00017143	3.4559	0.0021644	626.2893253034953	29.625	0.41451	29.625	29.515	29.93	0					18	8	4	0	0	0	0.32407	1	10864	10864		59.931	8.5953	1	979320			37536	8096	25771	25862	37995	37995		329;330			-0.0517511803952857
SPLAARLLY	9	Unmodified	_SPLAARLLY_					0	0	0		ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.29986572265625	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.518	1	42.518	42.018	43.018	0								0	0	0	0.3119	1	16686	16686		32.812	6.1195	1				37537	1998	25772	25863	37996	37996					0.08502637202570895
SPLAARLLY	9	Unmodified	_SPLAARLLY_					0	0	0		ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3002014160156	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.476	1	42.476	41.976	42.976	0								0	0	0	0.091069	1	16954	16954		74.255	33.682	1				37538	1998	25772	25863	37997	37997					0.08502637202570895
SPLAARLLY	9	Unmodified	_SPLAARLLY_					0	0	0		ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.30029296875	2	502.300384	1002.58622	1.1458	0.00057555	-3.0063	-0.00151	-1.8604	-0.00093449	502.29821740371125	42.479	0.47766	42.479	42.372	42.85	0					18	13	2	0	0	0	0.0792	1	16964	16964		84.916	37.258	1	102020			37539	1998	25772	25863	37998	37998					0.08502637202570895
SPLDAPFPA	9	Unmodified	_SPLDAPFPA_					0	0	0		ENSG00000135625|ENST00000436467|EGR4;nc|ENSG00000135625|Q05215|EGR4	ENSG00000135625|ENST00000436467|EGR4	ENSG00000135625|ENST00000436467|EGR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7340087890625	2	457.734543	913.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.483	1	22.483	21.983	22.983	0								0	0	0	0.35507	1	6625	6625		24.203	1.1603	1				37540	4008	25773	25864	37999	37999					-0.005655928851979297
SPLFPEMQS	9	Unmodified	_SPLFPEMQS_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.243408203125	2	518.244418	1034.47428	0.10338	5.3577E-05	-2.0062	-0.0010397	-1.9029	-0.00098614	518.2433314203137	16.401	0.074966	16.401	16.368	16.443	0					4	2	2	0	0	0	0.61124	1	3934	3934		15.642	2.1878	1	72830			37541	4019	25774	25865	38000	38000					-0.04157584936751846
SPLFPLHLA	9	Unmodified	_SPLFPLHLA_					0	0	0			REV__ENST00000470661.1_1_6:64237905-64286433:+|nuORF	REV__ENST00000470661.1_1_6:64237905-64286433:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.79119873046875	2	497.789653	993.564752	2.9129	0.00145	0.12637	6.2905E-05	3.0393	0.0015129	497.78960810277226	26.077	0.26783	26.077	25.966	26.234	0					8	5	2	0	0	0	0.41354	1	9181	9181		40.573	40.573	1	701110	+		37542	19471	25775	25866	38001	38001					0.06771252173837183
SPLGARQY	8	Unmodified	_SPLGARQY_					0	0	0			REV__ENSG00000184560|ENST00000333870|SPEM2	REV__ENSG00000184560|ENST00000333870|SPEM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.238525390625	2	446.237784	890.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.195	1	31.195	30.695	31.695	0								0	0	0	1.7419	1	10712	10712		37.159	6.8414	1		+		37543	16988	25776	25867	38002	38002					0.011403450661759962
SPLGGERPF	9	Unmodified	_SPLGGERPF_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant;LIMCH1|p.E420Sfs*61|1|0.09|ENSG00000064042|chr4:41646277-41646277|A/-|frameshift_variant	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.25067138671875	2	480.250892	958.48723	-0.64521	-0.00030986	0.7539	0.00036206	0.1087	5.2201E-05	480.25135153536195	34.012	0.50141	34.012	33.859	34.36	0					18	10	3	0	0	0	0.11898	1	13002	13002		75.043	9.2401	1	439260			37544	1342	25777	25868	38003	38003					0.006326142376565258
SPLKTTSSY	9	Unmodified	_SPLKTTSSY_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2552185058594	2	492.25584	982.497126	-0.16477	-8.1111E-05	0.10702	5.2683E-05	-0.057751	-2.8428E-05	492.2558178550112	23.445	0.1604	23.445	23.372	23.532	0					11	5	3	0	0	0	0.0080613	1	6785	6785		145.16	33.507	1	189920			37545	3372	25778	25869	38004	38004					0.0051775745238273885
SPLKTTSSY	9	Unmodified	_SPLKTTSSY_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.25555419921875	2	492.25584	982.497126	-1.2638	-0.00062213	0.55614	0.00027376	-0.7077	-0.00034837	492.25624131417186	23.493	0.12498	23.493	23.424	23.549	0					10	4	3	0	0	0	0.026848	1	7069	7069		112.11	35.333	1	162190			37546	3372	25778	25869	38005	38005					0.0051775745238273885
SPLKTTSSY	9	Unmodified	_SPLKTTSSY_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2558288574219	2	492.25584	982.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.562	1	23.562	23.062	24.062	0								0	0	0	0.095784	1	7212	7212		72.879	9.9008	1				37547	3372	25778	25869	38006	38006					0.0051775745238273885
SPLKTTSSY	9	Unmodified	_SPLKTTSSY_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.25555419921875	2	492.25584	982.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.542	1	23.542	23.042	24.042	0								0	0	0	0.012693	1	7202	7202		106.68	32.166	1				37548	3372	25778	25869	38007	38007					0.0051775745238273885
SPLKTTSSY	9	Unmodified	_SPLKTTSSY_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2562561035156	2	492.25584	982.497126	-0.58692	-0.00028892	0.89401	0.00044008	0.30708	0.00015116	492.2563138845313	23.692	0.16212	23.692	23.585	23.747	0					8	3	3	0	0	0	0.078509	1	8082	8082		85.161	28.44	1	678870			37549	3372	25778	25869	38008	38008					0.0051775745238273885
SPLKTTSSY	9	Unmodified	_SPLKTTSSY_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B;POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2559509277344	2	492.25584	982.497126	0.83477	0.00041092	-0.70059	-0.00034487	0.13418	6.6051E-05	492.25536584495165	23.675	0.36288	23.675	23.568	23.931	0					14	7	3	0	0	0	0.0076184	1	8071	8071		146.79	70.011	1	1606400			37550	3372	25778	25869	38009	38009					0.0051775745238273885
SPLLHTVGAI	10	Unmodified	_SPLLHTVGAI_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2987365722656	2	504.297842	1006.58113	0.77011	0.00038836	0.19589	9.8785E-05	0.966	0.00048715	504.2979514181449	27.488	1.2522	27.488	26.969	28.221	0					52	30	2	0	0	0	0.37692	1	9554	9554		58.782	5.4305	1	229890	+		37551	12627	25779	25870	38010	38010					0.0781033333993264
SPLPPGGKQEA	11	Unmodified	_SPLPPGGKQEA_					0	0	0		ENST00000310015.10_1_2:174829909-174830263:-|nuORF	ENST00000310015.10_1_2:174829909-174830263:-|nuORF	ENST00000310015.10_1_2:174829909-174830263:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7881469726562	2	540.787838	1079.56112	1.668	0.00090206	1.2362	0.00066853	2.9043	0.0015706	540.7886454460732	24.544	0.15432	24.544	24.474	24.628	0					7	4	2	0	0	0	0.50799	1	7255	7255		43.651	4.398	1	159330			37552	8544	25780	25871	38011	38011					0.024525376093379236
SPLPPHSGPY	10	Unmodified	_SPLPPHSGPY_					0	0	0			REV__ENST00000409161.5_1_11:70507885-70508014:-|nuORF	REV__ENST00000409161.5_1_11:70507885-70508014:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2650146484375	2	526.263999	1050.51345	1.3354	0.00070275	-0.35261	-0.00018557	0.98275	0.00051718	526.263947089449	22.517	0.29588	22.517	22.434	22.73	0					17	9	3	0	0	0	0.58896	1	6369	6369		35.618	6.4687	1	229230	+		37553	18990	25781	25872	38012	38012					-0.0097911659086094
SPLRLAYSA	9	Unmodified	_SPLRLAYSA_					0	0	0		ENSG00000142700|ENST00000404795|DMRTA2	ENSG00000142700|ENST00000404795|DMRTA2	ENSG00000142700|ENST00000404795|DMRTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.2738342285156	2	489.274367	976.53418	-0.033365	-1.6325E-05	-0.61688	-0.00030183	-0.65025	-0.00031815	489.2739740702072	36.62	0.34797	36.62	36.523	36.871	0					58	19	4	0	0	0	0.42902	1	12001	12001		39.253	1.7447	1	1692900			37554	4508	25782	25873	38013	38013					0.044974737887855554
SPLTRWTK	8	Unmodified	_SPLTRWTK_					0	0	0		AXIN2|p.T125Sfs*10|1|0.28|ENSG00000168646|chr17:65558231-65558247|TACTCGTAAAGTTTTGG/-|frameshift_variant;AXIN2|p.T97Ffs*43|1|0.23|ENSG00000168646|chr17:65558332-65558333|TT/-|frameshift_variant;AXIN2|p.L191*|1|0.37|ENSG00000168646|chr17:65558049-65558049|A/-|frameshift_variant;AXIN2|p.R256Efs*13|1|0.55|ENSG00000168646|chr17:65557856-65557857|-/A|frameshift_variant;AXIN2|p.A292Cfs*10|1|0.29|ENSG00000168646|chr17:65549602-65549603|-/A|frameshift_variant;AXIN2|p.S303Ifs*3|1|0.59|ENSG00000168646|chr17:65549570-65549571|-/A|frameshift_variant;AXIN2|p.L349Sfs*25|1|0.78|ENSG00000168646|chr17:65541469-65541470|-/A|frameshift_variant;ENST00000577662.1_1_17:63534239-63554825:-|nuORF;AXIN2|p.G406Rfs*53|1|0.23|ENSG00000168646|chr17:65537820-65537821|-/CT|frameshift_variant;AXIN2|p.L499Pfs*129|1|0.24|ENSG00000168646|chr17:65537540-65537541|-/G|frameshift_variant;AXIN2|p.L688*|1|0.4|ENSG00000168646|chr17:65536399-65536399|G/-|frameshift_variant;AXIN2|p.G665Afs*24|4|0.35|ENSG00000168646|chr17:65536467-65536467|C/-|frameshift_variant;AXIN2|p.N666Qfs*41|2|0.51|ENSG00000168646|chr17:65536466-65536467|-/C|frameshift_variant;AXIN2|p.L688Pfs*19|1|0.25|ENSG00000168646|chr17:65536398-65536399|-/G|frameshift_variant;ENSG00000168646|ENST00000307078|AXIN2	AXIN2|p.T125Sfs*10|1|0.28|ENSG00000168646|chr17:65558231-65558247|TACTCGTAAAGTTTTGG/-|frameshift_variant	AXIN2|p.T125Sfs*10|1|0.28|ENSG00000168646|chr17:65558231-65558247|TACTCGTAAAGTTTTGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1907653808594	3	330.190665	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.469	1	53.469	52.969	53.969	0								0	0	0	1.7419	1	18814	18814		21.96	2.8564	1				37555	265	25783	25874	38014	38014					0.0558918002569726
SPMESTQSL	9	Unmodified	_SPMESTQSL_					0	0	0		nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2234191894531	2	490.223682	978.432811	-0.12144	-5.9534E-05	-0.39614	-0.0001942	-0.51758	-0.00025373	490.22349592446625	32.128	0.19866	32.128	32.021	32.219	0					17	8	3	0	0	0	0.22837	1	10361	10361		58.23	1.5089	1	181720			37556	3711	25784	25875	38015	38015					-0.05726765696044822
SPMESTQSL	9	Unmodified	_SPMESTQSL_					0	0	0		nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.22344970703125	2	490.223682	978.432811	0.81066	0.0003974	-1.3786	-0.00067581	-0.56792	-0.00027841	490.2231635053922	32.385	0.29197	32.385	32.303	32.595	0					18	7	3	0	0	0	0.016683	1	11894	11894		127.46	28.087	1	1207200			37557	3711	25784	25875	38016	38016					-0.05726765696044822
SPMESTQSL	9	Unmodified	_SPMESTQSL_					0	0	0		nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2238464355469	2	490.223682	978.432811	-0.53953	-0.00026449	0.59011	0.00028929	0.050584	2.4798E-05	490.2240090910701	32.379	0.32016	32.379	32.219	32.54	0					15	6	3	0	0	0	0.037924	1	12188	12188		101.25	5.0622	1	1099100			37558	3711	25784	25875	38017	38017					-0.05726765696044822
SPMNHSVQM	9	Unmodified	_SPMNHSVQM_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7259521484375	2	515.725869	1029.43719	-0.50511	-0.0002605	0.44324	0.00022859	-0.061869	-3.1907E-05	515.7262752467932	25.628	0.11759	25.628	25.569	25.687	0					4	2	2	0	0	0	0.34452	1	9133	9133		46.457	8.6453	1	158120			37559	691	25785	25876	38018	38018					-0.07635579754150967
SPMPSHPKPLG	11	Unmodified	_SPMPSHPKPLG_					0	0	0			REV__nc|ENSG00000164621|Q9Y6J3|SMAD5-AS1	REV__nc|ENSG00000164621|Q9Y6J3|SMAD5-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.3020629882812	2	574.300059	1146.58556	3.3431	0.0019199	-0.16072	-9.2304E-05	3.1824	0.0018276	574.3000135580138	15.087	0.11718	15.087	15.029	15.146	0					4	2	2	0	0	0	0.67178	1	3914	3914		30.318	1.1477	1	488470	+		37560	21098	25786	25877	38019	38019					0.018134744912003953
SPNAIFKAL	9	Unmodified	_SPNAIFKAL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.T243Pfs*10|1|0.44|ENSG00000125398|chr17:72123576-72123576|C/-|frameshift_variant;SOX9|p.E293Qfs*4|1|0.58|ENSG00000125398|chr17:72123728-72123729|-/TCAA|frameshift_variant;SOX9|p.R264Qfs*32|1|0.69|ENSG00000125398|chr17:72123639-72123640|-/G|frameshift_variant;SOX9|p.D290Rfs*6|1|0.39|ENSG00000125398|chr17:72123723-72123724|-/C|frameshift_variant;SOX9|p.R257Afs*39|3|0.16|ENSG00000125398|chr17:72123621-72123622|-/G|frameshift_variant;SOX9|p.P258Gfs*23|1|0.62|ENSG00000125398|chr17:72123621-72123622|-/GGGGC|frameshift_variant;SOX9|p.D274Wfs*6|1|0.18|ENSG00000125398|chr17:72123673-72123674|-/GT|frameshift_variant;SOX9|p.G256Rfs*24|1|0.34|ENSG00000125398|chr17:72123617-72123618|-/GA|frameshift_variant;SOX9|p.R257Gfs*23|1|0.54|ENSG00000125398|chr17:72123621-72123622|-/GG|frameshift_variant;SOX9|p.G233Afs*20|1|0.34|ENSG00000125398|chr17:72123553-72123553|G/-|frameshift_variant;SOX9|p.P237Tfs*14|1|0.31|ENSG00000125398|chr17:72123564-72123565|CC/-|frameshift_variant;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.77874755859375	2	480.779285	959.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.664	1	42.664	42.164	43.164	0								0	0	0	0.22284	1	16144	16144		47.657	0	1				37561	3412;22432	25787	25878	38020	38020					0.06262661794164615
SPNAIFKAL	9	Unmodified	_SPNAIFKAL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.T243Pfs*10|1|0.44|ENSG00000125398|chr17:72123576-72123576|C/-|frameshift_variant;SOX9|p.E293Qfs*4|1|0.58|ENSG00000125398|chr17:72123728-72123729|-/TCAA|frameshift_variant;SOX9|p.R264Qfs*32|1|0.69|ENSG00000125398|chr17:72123639-72123640|-/G|frameshift_variant;SOX9|p.D290Rfs*6|1|0.39|ENSG00000125398|chr17:72123723-72123724|-/C|frameshift_variant;SOX9|p.R257Afs*39|3|0.16|ENSG00000125398|chr17:72123621-72123622|-/G|frameshift_variant;SOX9|p.P258Gfs*23|1|0.62|ENSG00000125398|chr17:72123621-72123622|-/GGGGC|frameshift_variant;SOX9|p.D274Wfs*6|1|0.18|ENSG00000125398|chr17:72123673-72123674|-/GT|frameshift_variant;SOX9|p.G256Rfs*24|1|0.34|ENSG00000125398|chr17:72123617-72123618|-/GA|frameshift_variant;SOX9|p.R257Gfs*23|1|0.54|ENSG00000125398|chr17:72123621-72123622|-/GG|frameshift_variant;SOX9|p.G233Afs*20|1|0.34|ENSG00000125398|chr17:72123553-72123553|G/-|frameshift_variant;SOX9|p.P237Tfs*14|1|0.31|ENSG00000125398|chr17:72123564-72123565|CC/-|frameshift_variant;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.77880859375	2	480.779285	959.544017	0.67906	0.00032648	-1.3526	-0.0006503	-0.67354	-0.00032382	480.77861509891443	42.598	0.30334	42.598	42.4	42.704	0					25	15	2	0	0	0	0.36892	1	16683	16683		44.377	3.8046	1	99323			37562	3412;22432	25787	25878	38021	38021					0.06262661794164615
SPNAIFKAL	9	Unmodified	_SPNAIFKAL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.T243Pfs*10|1|0.44|ENSG00000125398|chr17:72123576-72123576|C/-|frameshift_variant;SOX9|p.E293Qfs*4|1|0.58|ENSG00000125398|chr17:72123728-72123729|-/TCAA|frameshift_variant;SOX9|p.R264Qfs*32|1|0.69|ENSG00000125398|chr17:72123639-72123640|-/G|frameshift_variant;SOX9|p.D290Rfs*6|1|0.39|ENSG00000125398|chr17:72123723-72123724|-/C|frameshift_variant;SOX9|p.R257Afs*39|3|0.16|ENSG00000125398|chr17:72123621-72123622|-/G|frameshift_variant;SOX9|p.P258Gfs*23|1|0.62|ENSG00000125398|chr17:72123621-72123622|-/GGGGC|frameshift_variant;SOX9|p.D274Wfs*6|1|0.18|ENSG00000125398|chr17:72123673-72123674|-/GT|frameshift_variant;SOX9|p.G256Rfs*24|1|0.34|ENSG00000125398|chr17:72123617-72123618|-/GA|frameshift_variant;SOX9|p.R257Gfs*23|1|0.54|ENSG00000125398|chr17:72123621-72123622|-/GG|frameshift_variant;SOX9|p.G233Afs*20|1|0.34|ENSG00000125398|chr17:72123553-72123553|G/-|frameshift_variant;SOX9|p.P237Tfs*14|1|0.31|ENSG00000125398|chr17:72123564-72123565|CC/-|frameshift_variant;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7787780761719	2	480.779285	959.544017	0.92322	0.00044387	-1.4598	-0.00070183	-0.53656	-0.00025797	480.7785222210506	42.584	0.30029	42.584	42.372	42.673	0					14	8	2	0	0	0	0.11898	1	16966	16966		75.043	11.737	1	117720			37563	3412;22432	25787	25878	38022	38022					0.06262661794164615
SPNAKEFVY	9	Unmodified	_SPNAKEFVY_					0	0	0		ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7643432617188	2	527.763832	1053.51311	0.67946	0.00035859	0.19835	0.00010468	0.87781	0.00046328	527.763841978743	32.98	0.34408	32.98	32.823	33.167	0					16	7	3	0	0	0	0.017421	1	12474	12474		126.24	59.813	1	575440			37564	6990	25788	25879	38023	38023					-0.011505363107289668
SPNAKEFVY	9	Unmodified	_SPNAKEFVY_					0	0	0		ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7640380859375	2	527.763832	1053.51311	1.6284	0.00085943	-1.0134	-0.00053484	0.61503	0.00032459	527.7633837338107	32.964	0.39136	32.964	32.858	33.249	0					14	8	2	0	0	0	0.10506	1	12490	12490		78.264	4.289	1	1088000			37565	6990	25788	25879	38024	38024					-0.011505363107289668
SPNEFKVYM	9	Unmodified	_SPNEFKVYM_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000577409.1_1_18:72183591-72185955:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7661743164062	2	557.765517	1113.51648	1.2622	0.00070403	-0.14961	-8.3448E-05	1.1126	0.00062058	557.7653724991649	39.805	0.15105	39.805	39.701	39.852	0					6	3	2	0	0	0	0.1424	1	15748	15748		69.628	12.907	1	69884			37566	3848	25789	25880	38025	38025					-0.03573609528348243
SPNSLTLANIV	11	Unmodified	_SPNSLTLANIV_					0	0	0		ENST00000477982.2_1_13:77575078-77575330:-|nuORF	ENST00000477982.2_1_13:77575078-77575330:-|nuORF	ENST00000477982.2_1_13:77575078-77575330:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.8170166015625	2	564.816596	1127.61864	0.34156	0.00019292	-0.024072	-1.3596E-05	0.31748	0.00017932	564.816513630909	28.965	0.97917	28.965	28.591	29.57	0					81	24	6	0	0	0	0.024389	2	10225	10225;10394		117.81	21.059	1	16150000			37567	9925	25790	25881	38026;38027	38026					0.059933798148904316
SPNSLTLANIV	11	Unmodified	_SPNSLTLANIV_					0	0	0		ENST00000477982.2_1_13:77575078-77575330:-|nuORF	ENST00000477982.2_1_13:77575078-77575330:-|nuORF	ENST00000477982.2_1_13:77575078-77575330:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.8165283203125	2	564.816596	1127.61864	-0.35533	-0.00020069	1.1699	0.00066075	0.81453	0.00046006	564.8172158201173	28.716	0.4777	28.716	28.482	28.96	0					52	18	4	0	0	0	0.575	1	9358	9358		38.754	8.1847	1	981920			37568	9925	25790	25881	38028	38028					0.059933798148904316
SPNSLTLANIV	11	Unmodified	_SPNSLTLANIV_					0	0	0		ENST00000477982.2_1_13:77575078-77575330:-|nuORF	ENST00000477982.2_1_13:77575078-77575330:-|nuORF	ENST00000477982.2_1_13:77575078-77575330:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8175048828125	2	564.816596	1127.61864	0.16888	9.5388E-05	0.45199	0.00025529	0.62088	0.00035068	564.8168309607851	28.952	0.72194	28.952	28.645	29.367	0					46	15	5	0	0	0	0.29191	1	10584	10584		63.534	12.341	1	5762400			37569	9925	25790	25881	38029	38029					0.059933798148904316
SPPAETHVF	9	Unmodified	_SPPAETHVF_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.T1046Qfs*7|2|0.22|ENSG00000111799|chr6:75156372-75156372|G/-|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7434997558594	2	492.742899	983.471246	-0.16482	-8.1212E-05	0.34808	0.00017151	0.18326	9.0301E-05	492.74308841645416	29.342	0.3427	29.342	29.218	29.561	0					17	12	2	0	0	0	0.39215	1	9254	9254		42.396	6.7778	1	60677			37570	594	25791	25882	38030	38030					-0.02115091999235119
SPPAETHVF	9	Unmodified	_SPPAETHVF_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.T1046Qfs*7|2|0.22|ENSG00000111799|chr6:75156372-75156372|G/-|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7428894042969	2	492.742899	983.471246	0.7845	0.00038656	-1.0166	-0.00050092	-0.2321	-0.00011437	492.7423499862396	29.643	0.57572	29.643	29.485	30.06	0					33	14	3	0	0	0	0.2873	1	10573	10573		51.335	12.529	1	260810			37571	594	25791	25882	38031	38031					-0.02115091999235119
SPPAETHVF	9	Unmodified	_SPPAETHVF_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.T1046Qfs*7|2|0.22|ENSG00000111799|chr6:75156372-75156372|G/-|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7430725097656	2	492.742899	983.471246	-0.60077	-0.00029603	0.57318	0.00028243	-0.02759	-1.3595E-05	492.7431035324559	29.571	0.5578	29.571	29.456	30.014	0					27	11	4	0	0	0	0.2873	1	10830	10830		51.335	12.083	1	249150			37572	594	25791	25882	38032	38032					-0.02115091999235119
SPPHPPFL	8	Unmodified	_SPPHPPFL_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2395935058594	2	446.239796	890.465038	0.81937	0.00036564	-1.3637	-0.00060854	-0.54433	-0.0002429	446.2391552825403	31.411	0.45961	31.411	31.207	31.667	0					13	9	2	0	0	0	0.59916	1	11730	11730		49.211	2.4444	1	634870	+		37573	16803	25792	25883	38033	38033					0.015424345599058142
SPPLNLNPV	9	Unmodified	_SPPLNLNPV_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2;ENST00000480881.1_1_9:115179142-115201087:+|nuORF	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.26837158203125	2	475.768917	949.523281	-0.18134	-8.6275E-05	-0.63275	-0.00030105	-0.81409	-0.00038732	475.76866079513263	27.638	0.38981	27.638	27.492	27.882	0					37	12	5	0	0	0	0.4966	1	8514	8514		32.812	11.865	1	2488400			37574	3117	25793	25884	38034	38034					0.04650071414528156
SPPLPRVY	8	Unmodified	_SPPLPRVY_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.7660217285156	2	464.766178	927.517802	-0.44036	-0.00020466	0.15483	7.1957E-05	-0.28554	-0.00013271	464.7663081589448	38.217	0.35132	38.217	38.125	38.476	0					37	20	3	0	0	0	0.7126	1	12460	12460		31.955	2.1133	1	427810	+		37575	16601	25794	25885	38035	38035					0.05114392622704145
SPPLPRVY	8	Unmodified	_SPPLPRVY_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.76702880859375	2	464.766178	927.517802	-0.7834	-0.0003641	0.71095	0.00033043	-0.072445	-3.367E-05	464.76638531644306	38.283	0.3682	38.283	38.186	38.554	0					39	19	3	0	0	0	0.76283	1	12901	12901		25.45	3.7478	1	521490	+		37576	16601	25794	25885	38036	38036					0.05114392622704145
SPPPTAEGTS	10	Unmodified	_SPPPTAEGTS_					0	0	0		MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17;MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2220458984375	2	472.221997	942.429441	-0.12319	-5.8174E-05	-2.5647	-0.0012111	-2.6879	-0.0012693	472.2209448100854	31.052	0.32988	31.052	30.827	31.157	0					10	7	2	0	0	0	0.65213	1	11599	11599		27.882	4.8398	1	98615			37577	6191	25795	25886	38037	38037					-0.04407692478412173
SPPSSRKSVM	10	Unmodified	_SPPSSRKSVM_					0	0	0			REV__ENST00000521506.1_1_5:171682090-171682429:-|nuORF	REV__ENST00000521506.1_1_5:171682090-171682429:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2820434570312	2	538.281866	1074.54918	2.0198	0.0010872	-0.3145	-0.00016929	1.7053	0.00091794	538.2811862796532	30.188	0.35949	30.188	30.082	30.441	0					16	7	3	0	0	0	0.52275	1	11161	11161		42.864	2.0861	1	1067100	+		37578	19960	25796	25887	38038	38038					0.014885975944935126
SPPVKAVPI	9	Unmodified	_SPPVKAVPI_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2843017578125	2	454.284203	906.553853	-0.35606	-0.00016175	-0.14973	-6.8019E-05	-0.50579	-0.00022977	454.28412139016154	26.024	1.2947	26.024	25.214	26.508	0					88	40	3	0	0	0	0.47038	1	7630	7630		35.618	0.41757	1	347430			37579	7794	25797	25888	38039	38039					0.0968384979955772
SPPVSPCFR	9	Unmodified	_SPPVSPCFR_					0	0	0		ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	330.5004577636719	3	330.500622	988.480036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.606	1	22.606	22.106	23.106	0								0	0	0	0.36266	1	6680	6680		16.717	0.24424	1				37580	9049	25798	25889	38040	38040					-0.014664416344089659
SPPVVHHVPRQ	11	Unmodified	_SPPVVHHVPRQ_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	626.8480224609375	2	626.849096	1251.68364	-2.1394	-0.0013411	1.2553	0.00078691	-0.88409	-0.00055419	626.8497599062878	27.01	0.1625	27.01	26.928	27.09	0					10	4	3	0	0	0	0.47622	1	8770	8770		45.972	0	1	189280	+		37581	14612	25799	25890	38041	38041					0.06786419131412913
SPQGTYAHV	9	Unmodified	_SPQGTYAHV_					0	0	0			REV__ENSG00000099812|ENST00000215582|MISP	REV__ENSG00000099812|ENST00000215582|MISP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2344970703125	2	480.232699	958.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.234	1	20.234	19.734	20.734	0								0	0	0	0.36266	1	6526	6526		21.96	1.4781	1		+		37582	13499	25800	25891	38042	38042					-0.03004262659055712
SPQLLLHSL	9	Unmodified	_SPQLLLHSL_					0	0	0			REV__ENST00000543571.5_1_6:150004846-150004945:-|nuORF	REV__ENST00000543571.5_1_6:150004846-150004945:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	0.53459	0.00017991	-0.68095	-0.00022916	-0.14636	-4.9254E-05	336.53404801484345	37.053	1.572	37.053	36.302	37.874	0					86	47	2	0	0	0	0.60749	1	14598	14598		16.007	3.1951	1	176090	+		37583	20150	25801	25892	38043	38043					0.07810333339955378
SPQPDGKVVY	10	Unmodified	_SPQPDGKVVY_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2826538085938	2	545.282389	1088.55022	1.8156	0.00099002	-0.86186	-0.00046996	0.95376	0.00052007	545.2819273859744	26.644	0.41197	26.644	26.423	26.835	0					23	9	4	0	0	0	0.18316	1	9166	9166		81.525	14.031	1	507680			37584	6266	25802	25893	38044	38044					0.009491352350551097
SPQPDGKVVY	10	Unmodified	_SPQPDGKVVY_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7831420898438	2	545.282389	1088.55022	4.7654	0.0025985	-2.8328	-0.0015447	1.9326	0.0010538	545.2809960415995	26.401	0.31698	26.401	26.245	26.562	0					16	10	2	0	0	0	0.5276	1	8261	8261		42.338	3.3166	1	116350			37585	6266	25802	25893	38045	38045					0.009491352350551097
SPQPDGKVVY	10	Unmodified	_SPQPDGKVVY_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2828369140625	2	545.282389	1088.55022	0.93554	0.00051014	-0.23077	-0.00012584	0.70477	0.0003843	545.2822804018482	26.59	0.46891	26.59	26.426	26.895	0					26	9	4	0	0	0	0.31894	1	9520	9520		65.157	6.9273	1	733750			37586	6266	25802	25893	38046	38046					0.009491352350551097
SPQPDGKVVY	10	Unmodified	_SPQPDGKVVY_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2830200195312	2	545.282389	1088.55022	0.5714	0.00031157	0.38045	0.00020745	0.95185	0.00051902	545.2824929300663	26.61	0.42057	26.61	26.4	26.821	0					23	8	4	0	0	0	0.15477	1	9386	9386		85.862	18.368	1	708110			37587	6266	25802	25893	38047	38047					0.009491352350551097
SPQQEKQPRL	10	Unmodified	_SPQQEKQPRL_					0	0	0		ENST00000537638.6_1_12:57881132-57881282:+|nuORF	ENST00000537638.6_1_12:57881132-57881282:+|nuORF	ENST00000537638.6_1_12:57881132-57881282:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8309326171875	2	605.830569	1209.64658	0.73976	0.00044817	-0.60476	-0.00036639	0.135	8.1785E-05	605.8302720930034	24.849	0.51298	24.849	24.593	25.106	0					30	10	4	0	0	0	0.48965	1	8735	8735		46.457	3.5925	1	2767100			37588	10507	25803	25894	38048	38048					0.050147027950060874
SPQRGLAL	8	Unmodified	_SPQRGLAL_					0	0	0		ZNF516|p.M844Cfs*131|1|0.2|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.2|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.2|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.24847412109375	2	421.248152	840.481751	-0.91903	-0.00038714	0.45062	0.00018982	-0.46841	-0.00019732	421.2483404280159	30.649	0.40156	30.649	30.514	30.916	0					20	9	3	0	0	0	0.58597	1	11061	11061		51.335	1.8939	1	466470			37589	23160	25804	25895	38049	38049					0.055129354458472335
SPQRMRMK	8	Oxidation (M)	_SPQRMRM(Oxidation (M))K_		SPQRM(0.001)RM(0.999)K		SPQRM(-32)RM(32)K	0	0	1		KIF18B|p.G393Efs*91|1|0.13|ENSG00000186185|chr17:44932733-44932733|C/-|frameshift_variant	KIF18B|p.G393Efs*91|1|0.13|ENSG00000186185|chr17:44932733-44932733|C/-|frameshift_variant	KIF18B|p.G393Efs*91|1|0.13|ENSG00000186185|chr17:44932733-44932733|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2723388671875	2	525.270778	1048.527	1.9081	0.0010022	1.2298	0.00064597	3.1379	0.0016482	525.2714715700221	27.919	0.22294	27.919	27.792	28.015	0					13	5	4	0	0	0	0.44433	1	9827	9827		65.803	65.803	2	316120			37590	11254	25805	25896	38050	38050		440			0.004680946450889678
SPQRPALA	8	Unmodified	_SPQRPALA_					0	0	0			REV__ENST00000295760.11_3_3:13679162-13679222:+|nuORF	REV__ENST00000295760.11_3_3:13679162-13679222:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.2402648925781	2	420.240327	838.466101	-0.19388	-8.1476E-05	0.073029	3.069E-05	-0.12085	-5.0786E-05	420.2402522836631	20.984	0.16028	20.984	20.907	21.067	0					9	4	3	0	0	0	0.70055	1	5712	5712		33.516	1.5607	1	151010	+		37591	18175	25806	25897	38051	38051					0.04040648928787505
SPQSTVTVF	9	Unmodified	_SPQSTVTVF_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2508850097656	2	483.250557	964.486562	0.33188	0.00016038	0.33449	0.00016164	0.66636	0.00032202	483.25066313451026	41.833	0.23045	41.833	41.725	41.955	0					20	11	2	0	0	0	0.048471	1	15868	15868		95.815	21.56	1	148180			37592	2053	25807	25898	38052	38052					0.0028977479797731576
SPQVRAAL	8	Unmodified	_SPQVRAAL_					0	0	0		ENST00000372703.1_1_1:40974852-40974987:+|nuORF	ENST00000372703.1_1_1:40974852-40974987:+|nuORF	ENST00000372703.1_1_1:40974852-40974987:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.247802734375	2	421.248152	840.481751	-2.5473	-0.001073	1.611	0.00067862	-0.93629	-0.00039441	421.24881524016195	22.104	0.18149	22.104	22.02	22.202	0					8	4	2	0	0	0	0.65148	1	6519	6519		40.778	4.3314	1	205090			37593	8982	25808	25899	38053	38053					0.055129354458472335
SPQYFSSY	8	Unmodified	_SPQYFSSY_					0	0	0			REV__DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant	REV__DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7113037109375	2	489.713808	977.413062	-1.2534	-0.00061381	-2.9032	-0.0014217	-4.1566	-0.0020355	489.71221787747515	21.23	0.27156	21.23	21.157	21.428	0					13	8	2	0	0	0	0.61938	1	6066	6066		45.952	1.8352	1	102010	+		37594	12717	25809	25900	38054	38054					-0.0765477364451499
SPRISASVSL	10	Unmodified	_SPRISASVSL_					0	0	0			REV__ENST00000421085.6_1_X:10125012-10125102:+|nuORF	REV__ENST00000421085.6_1_X:10125012-10125102:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.5292663574219	3	339.529346	1015.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.761	1	19.761	19.261	20.261	0								0	0	0	0.36846	1	5430	5430		40.058	4.9061	1		+		37595	19078	25810	25901	38055	38055					0.059048414719427456
SPRRAGKY	8	Unmodified	_SPRRAGKY_					0	0	0			REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|29|1|anti-sense	REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|29|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7633972167969	2	467.764501	933.514448	-1.1091	-0.0005188	-0.95435	-0.00044641	-2.0634	-0.00096521	467.76395873201733	22.886	0.1671	22.886	22.777	22.944	0					5	3	2	0	0	0	0.70055	1	7825	7825		33.516	0	1	61530	+		37596	20878	25811	25902	38056	38056					0.04503142568705698
SPRRRAPP	8	Unmodified	_SPRRRAPP_					0	0	0			REV__ENST00000361961.7_1_12:39764061-39837002:-|nuORF	REV__ENST00000361961.7_1_12:39764061-39837002:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7796325683594	2	468.777942	935.541332	0.02664	1.2488E-05	2.8547	0.0013382	2.8813	0.0013507	468.77944085154115	27.607	0.37489	27.607	27.352	27.727	0					16	12	2	0	0	0	0.68754	1	8516	8516		35.201	0	1	41293	+		37597	18578	25812	25903	38057	38057					0.07098251179888848
SPRSPDTTL	9	Unmodified	_SPRSPDTTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2510681152344	2	487.251089	972.487624	-0.33857	-0.00016497	-0.25166	-0.00012262	-0.59022	-0.00028759	487.2511044701271	23.826	0.49768	23.826	23.592	24.09	0					32	11	4	0	0	0	0.16806	1	7905	7905		65.465	9.9612	1	3179700			37598	7741	25813	25904	38058	38058					0.0002798916684696451
SPRSPDTTL	9	Unmodified	_SPRSPDTTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2508544921875	2	487.251089	972.487624	-0.96057	-0.00046804	0.53147	0.00025896	-0.42911	-0.00020908	487.25129420124676	23.575	0.3156	23.575	23.385	23.701	0					27	11	3	0	0	0	0.48389	1	7053	7053		34.173	1.3601	1	463190			37599	7741	25813	25904	38059	38059					0.0002798916684696451
SPRSPDTTL	9	Unmodified	_SPRSPDTTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2509765625	2	487.251089	972.487624	-0.70088	-0.00034151	0.3027	0.00014749	-0.39818	-0.00019401	487.2512990407239	23.737	0.51589	23.737	23.479	23.995	0					32	10	5	0	0	0	0.037924	1	8184	8184		101.25	29.957	1	2718100			37600	7741	25813	25904	38060	38060					0.0002798916684696451
SPSAGVHTF	9	Unmodified	_SPSAGVHTF_					0	0	0		ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1;WDTC1|p.E290Nfs*8|3|0.4|ENSG00000142784|chr1:27294617-27294617|G/-|frameshift_variant	ENST00000491239.2_1_1:27614218-27630434:+|nuORF	ENST00000491239.2_1_1:27614218-27630434:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7220764160156	2	451.721967	901.429381	-0.11117	-5.0217E-05	-0.71302	-0.00032209	-0.82419	-0.0003723	451.72173919719734	26.142	0.21433	26.142	26.034	26.249	0					6	4	2	0	0	0	0.1236	1	9335	9335		73.975	16.163	1	98757			37601	4511	25814	25905	38061	38061					-0.025276476877593268
SPSAPWRDQ	9	Unmodified	_SPSAPWRDQ_					0	0	0		nc|ENSG00000139537|Q8IXS2-2|CCDC65	nc|ENSG00000139537|Q8IXS2-2|CCDC65	nc|ENSG00000139537|Q8IXS2-2|CCDC65	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2472534179688	2	522.24888	1042.48321	0.082601	4.3138E-05	-2.9011	-0.0015151	-2.8185	-0.0014719	522.2474192537092	13.337	0.12442	13.337	13.254	13.378	0					6	3	2	0	0	0	0.47038	1	3020	3020		35.618	0	1	358610			37602	11549	25815	25906	38062	38062					-0.03633475256060592
SPSIQPPPK	9	Unmodified	_SPSIQPPPK_					0	0	0			REV__nc|ENSG00000141376|Q9H6U6-6|BCAS3	REV__nc|ENSG00000141376|Q9H6U6-6|BCAS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.731689453125	2	475.768917	949.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.585	1	33.585	33.085	34.085	0								0	0	0	0.19749	1	11803	11803		51.335	1.8939	1		+		37603	15111	25816	25907	38063	38063					0.046500714145167876
SPSKQLFSK	9	Unmodified	_SPSKQLFSK_					0	0	0			REV__SLC38A3|p.G45D|1|0.31|ENSG00000188338|chr3:50214434-50214434|G/A|missense_variant	REV__SLC38A3|p.G45D|1|0.31|ENSG00000188338|chr3:50214434-50214434|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2864685058594	2	511.287474	1020.5604	-0.38738	-0.00019806	-1.6049	-0.00082059	-1.9923	-0.0010187	511.286614869538	23.526	0.095135	23.526	23.454	23.549	0					6	3	2	0	0	0	0.21263	1	7086	7086		60.118	10.677	1	64373	+		37604	17168	25817	25908	38064	38064					0.050937429602981865
SPSNKDAAL	9	Unmodified	_SPSNKDAAL_					0	0	0		ENST00000542555.1_1_11:72140095-72145182:-|nuORF;CLPB|p.L339Wfs*5|1|0.11|ENSG00000162129|chr11:72317169-72317169|G/-|frameshift_variant;nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	ENST00000542555.1_1_11:72140095-72145182:-|nuORF	ENST00000542555.1_1_11:72140095-72145182:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.73236083984375	2	451.732532	901.45051	-0.10003	-4.5185E-05	-0.6102	-0.00027565	-0.71023	-0.00032083	451.7321873435313	25.919	0.39781	25.919	25.735	26.133	0					15	7	3	0	0	0	0.44593	1	8279	8279		37.812	0	1	149510			37605	560	25818	25909	38065	38065					-0.00415682378911697
SPSNLIADTAY	11	Unmodified	_SPSNLIADTAY_					0	0	0			REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.2852172851562	2	576.282586	1150.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.753	1	42.753	42.253	43.253	0								0	0	0	0.40876	1	16175	16175		35.152	0.97948	1		+		37606	15298	25819	25910	38066	38066					-0.018634898357504426
SPSNQPML	8	Unmodified	_SPSNQPML_					0	0	0		ENST00000465745.6_1_9:35093318-35093600:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF	ENST00000465745.6_1_9:35093318-35093600:-|nuORF	ENST00000465745.6_1_9:35093318-35093600:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.21002197265625	2	437.210378	872.406203	-0.27814	-0.00012161	-0.49213	-0.00021516	-0.77028	-0.00033677	437.2101844080864	37.174	0.11557	37.174	37.135	37.25	0					10	6	2	0	0	0	0.65276	1	12180	12180		40.573	1.7665	1	51775			37607	9779	25820	25911	38067	38067					-0.03510409796740532
SPSPDRHG	8	Unmodified	_SPSPDRHG_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.7019348144531	2	426.701566	851.388579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.002	1	15.002	14.502	15.502	0								0	0	0	1.7419	1	3281	3281		24.203	0	1		+		37608	12216	25821	25912	38068	38068					-0.04305989007377775
SPSPGWERPGA	11	Unmodified	_SPSPGWERPGA_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.7730102539062	2	570.775262	1139.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.382	1	14.382	13.882	14.882	0								0	0	0	0.40876	1	3038	3038		35.152	1.2304	1		+		37609	20593	25822	25913	38069	38069					-0.028215171932288285
SPSPNYQKY	9	Unmodified	_SPSPNYQKY_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2595825195312	2	542.258914	1082.50327	1.7912	0.00097127	-1.369	-0.00074237	0.42212	0.0002289	542.2586004015599	23.528	0.076347	23.528	23.477	23.553	0					5	3	2	0	0	0	0.60749	1	6828	6828		20.947	0	1	46785			37610	4938	25823	25914	38070	38070					-0.03467724316078602
SPSRTIIQY	9	Unmodified	_SPSRTIIQY_					0	0	0		ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.791015625	2	532.790381	1063.56621	0.12856	6.8494E-05	0.64845	0.00034549	0.77701	0.00041398	532.790945787248	32.013	0.21121	32.013	31.928	32.139	0					8	5	2	0	0	0	0.22837	1	11719	11719		58.23	10.573	1	306700			37611	6640	25824	25915	38071	38071					0.03696841471969492
SPSRTIIQY	9	Unmodified	_SPSRTIIQY_					0	0	0		ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7907104492188	2	532.790381	1063.56621	3.4026	0.0018129	-2.9681	-0.0015814	0.43448	0.00023149	532.7889922950986	31.991	0.3185	31.991	31.835	32.153	0					13	6	3	0	0	0	0.24334	1	12009	12009		56.434	12.057	1	1253700			37612	6640	25824	25915	38072	38072					0.03696841471969492
SPSSAQPFS	9	Unmodified	_SPSSAQPFS_					0	0	0			REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1	REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2116394042969	2	454.211432	906.408311	0.24704	0.00011221	0.22425	0.00010186	0.4713	0.00021407	454.21155853416906	31.873	0.22127	31.873	31.758	31.979	0					10	7	2	0	0	0	0.35021	1	11018	11018		45.972	0	1	123320	+		37613	19218	25825	25916	38073	38073					-0.048636577872798625
SPSSGETRS	9	Unmodified	_SPSSGETRS_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2114562988281	2	454.209421	906.404288	4.0082	0.0018206	1.3499	0.00061313	5.3581	0.0024337	454.20978542923825	31.883	0.20899	31.883	31.796	32.005	0					12	8	2	0	0	0	0.078509	1	10600	10600		85.161	5.7098	1	69114			37614	1295	25826	25917	38074	38074					-0.05265747280998312
SPSSVSNTF	9	Unmodified	_SPSSVSNTF_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.2165222167969	2	463.216714	924.418876	0.10465	4.8474E-05	-0.56634	-0.00026234	-0.4617	-0.00021387	463.2164349214169	31.849	0.34348	31.849	31.737	32.08	0					33	14	4	0	0	0	0.10915	1	10232	10232		77.318	31.366	1	666000			37615	4655	25827	25918	38075	38075					-0.046356751328403334
SPSSVSNTF	9	Unmodified	_SPSSVSNTF_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2166442871094	2	463.216714	924.418876	0.64365	0.00029815	-0.92243	-0.00042729	-0.27878	-0.00012914	463.2161969263874	32.143	0.41605	32.143	31.977	32.393	0					35	10	5	0	0	0	0.012231	1	11743	11743		136.27	56.817	1	4020200			37616	4655	25827	25918	38076	38076					-0.046356751328403334
SPSSVSNTF	9	Unmodified	_SPSSVSNTF_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.21630859375	2	463.216714	924.418876	-0.14413	-6.6762E-05	-0.014112	-6.5367E-06	-0.15824	-7.3299E-05	463.2166991205198	32.145	0.43057	32.145	32.001	32.432	0					24	9	4	0	0	0	0.048471	1	12157	12157		95.815	21.84	1	1601600			37617	4655	25827	25918	38077	38077					-0.046356751328403334
SPSSVSNTF	9	Unmodified	_SPSSVSNTF_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.21710205078125	2	463.216714	924.418876	-0.14423	-6.6808E-05	0.44536	0.0002063	0.30113	0.00013949	463.2169306899667	31.873	0.27509	31.873	31.789	32.064	0					18	8	3	0	0	0	0.0792	1	11009	11009		84.916	27.104	1	376650			37618	4655	25827	25918	38078	38078					-0.046356751328403334
SPSSVSNTF	9	Unmodified	_SPSSVSNTF_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2165222167969	2	463.216714	924.418876	-0.47573	-0.00022037	-0.10587	-4.9042E-05	-0.5816	-0.00026941	463.216694983132	32.076	0.46944	32.076	31.969	32.438	0					23	9	4	0	0	0	0.037569	1	12043	12043		101.6	19.36	1	2930700			37619	4655	25827	25918	38079	38079					-0.046356751328403334
SPSVRRWY	8	Unmodified	_SPSVRRWY_					0	0	0		ENST00000471349.1_1_7:882587-882716:+|nuORF	ENST00000471349.1_1_7:882587-882716:+|nuORF	ENST00000471349.1_1_7:882587-882716:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.777587890625	2	525.777608	1049.54066	-1.2331	-0.00064832	0.71569	0.0003763	-0.51738	-0.00027203	525.7780566296555	21.983	0.40941	21.983	21.792	22.202	0					22	9	4	0	0	0	0.63077	1	6456	6456		25.45	25.45	1	786510			37620	9850	25828	25919	38080	38080					0.017874117402016054
SPSVVHCL	8	Unmodified	_SPSVVHCL_					0	0	0		ENST00000590168.5_1_17:74467717-74469013:-|nuORF	ENST00000590168.5_1_17:74467717-74469013:-|nuORF	ENST00000590168.5_1_17:74467717-74469013:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.21563720703125	2	421.215463	840.416374	0.85826	0.00036151	-0.8571	-0.00036102	0.001166	4.9115E-07	421.2151289466298	33.179	0.63847	33.179	33.052	33.69	0					24	15	2	0	0	0	0.61433	1	12692	12692		46.766	2.2354	1	581980			37621	10947	25829	25920	38081	38081					-0.01021802071500133
SPSYSVTQM	9	Unmodified	_SPSYSVTQM_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2255859375	2	500.226225	998.437897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.46	1	36.46	35.96	36.96	0								0	0	0	0.1219	1	13754	13754		66.429	11.653	1				37622	4655	25830	25921	38082	38082					-0.06138461833438669
SPSYSVTQM	9	Unmodified	_SPSYSVTQM_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2260437011719	2	500.226225	998.437897	0.0059614	2.982E-06	-0.25629	-0.0001282	-0.25033	-0.00012522	500.2262216306433	36.431	0.25919	36.431	36.324	36.583	0					12	7	2	0	0	0	0.12239	1	14197	14197		74.255	13.961	1	101740			37623	4655	25830	25921	38083	38083					-0.06138461833438669
SPTEVVERL	9	Unmodified	_SPTEVVERL_					0	0	0		ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2	ENSG00000055917|ENST00000361078|PUM2	ENSG00000055917|ENST00000361078|PUM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2818603515625	2	515.282389	1028.55022	0.77765	0.00040071	-0.50208	-0.00025871	0.27558	0.000142	515.2824097647159	34.758	0.28975	34.758	34.657	34.947	0					10	8	2	0	0	0	0.36892	1	13457	13457		44.377	12.847	1	48483			37624	1283	25831	25922	38084	38084					0.03709135235044414
SPTKRLTL	8	Unmodified	_SPTKRLTL_					0	0	0		ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2844543457031	2	458.284734	914.554916	-0.4089	-0.00018739	-0.10898	-4.9945E-05	-0.51788	-0.00023734	458.2847201408816	27.529	0.2185	27.529	27.423	27.642	0					12	7	2	0	0	0	0.63077	1	8484	8484		44.117	1.2525	1	135760			37625	2225	25832	25923	38085	38085					0.09422064168461475
SPTNTVHMY	9	Unmodified	_SPTNTVHMY_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.239990234375	2	525.239667	1048.46478	1.3902	0.00073019	-0.53711	-0.00028211	0.85309	0.00044808	525.2398084402688	27.735	0.15054	27.735	27.642	27.792	0					9	4	3	0	0	0	0.035062	1	8586	8586		104.06	43.939	1	110200			37626	4266	25833	25924	38086	38086					-0.05751353222262878
SPTNTVHMY	9	Unmodified	_SPTNTVHMY_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.239990234375	2	525.239667	1048.46478	1.9023	0.00099918	-1.5652	-0.00082213	0.3371	0.00017706	525.2389662560131	27.969	0.25591	27.969	27.879	28.135	0					17	6	4	0	0	0	0.0025305	1	9842	9842		171.38	82.742	1	918420			37627	4266	25833	25924	38087	38087					-0.05751353222262878
SPTNTVHMY	9	Unmodified	_SPTNTVHMY_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2394409179688	2	525.239667	1048.46478	0.57329	0.00030112	-0.10336	-5.4291E-05	0.46993	0.00024683	525.2397933120826	27.728	0.15762	27.728	27.643	27.8	0					10	5	3	0	0	0	0.070005	1	8868	8868		88.177	14.202	1	132520			37628	4266	25833	25924	38088	38088					-0.05751353222262878
SPTNTVHMY	9	Unmodified	_SPTNTVHMY_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2401733398438	2	525.239667	1048.46478	1.1702	0.00061464	-0.69013	-0.00036248	0.48009	0.00025216	525.2394707091512	27.791	0.22244	27.791	27.701	27.923	0					9	5	3	0	0	0	0.055856	1	9149	9149		93.195	23.568	1	156780			37629	4266	25833	25924	38089	38089					-0.05751353222262878
SPTNTVHMY	9	Unmodified	_SPTNTVHMY_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2396850585938	2	525.239667	1048.46478	0.56367	0.00029606	0.90468	0.00047517	1.4683	0.00077123	525.2399727087775	27.918	0.2127	27.918	27.813	28.026	0					9	4	3	0	0	0	0.035062	1	10067	10067		104.06	24.606	1	216730			37630	4266	25833	25924	38090	38090					-0.05751353222262878
SPTNTVHMY	9	Unmodified	_SPTNTVHMY_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2394409179688	2	525.239667	1048.46478	1.6265	0.0008543	-0.89506	-0.00047012	0.73144	0.00038418	525.239020340389	27.951	0.46392	27.951	27.797	28.261	0					16	9	2	0	0	0	0.012231	1	10057	10057		136.27	45.491	1	1313100			37631	4266	25833	25924	38091	38091					-0.05751353222262878
SPTSPLNMK	9	Unmodified	_SPTSPLNMK_					0	0	0		SMARCA1|p.N376Ifs*16|1|0.37|ENSG00000102038|chrX:129504774-129504774|T/-|frameshift_variant;SMARCA1|p.M710Wfs*6|1|0.37|ENSG00000102038|chrX:129487107-129487107|T/-|frameshift_variant;SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;SMARCA1|p.T164Hfs*15|1|0.33|ENSG00000102038|chrX:129515933-129515933|T/-|frameshift_variant;SMARCA1|p.S298Ifs*14|1|0.76|ENSG00000102038|chrX:129508015-129508016|-/T|frameshift_variant	SMARCA1|p.N376Ifs*16|1|0.37|ENSG00000102038|chrX:129504774-129504774|T/-|frameshift_variant	SMARCA1|p.N376Ifs*16|1|0.37|ENSG00000102038|chrX:129504774-129504774|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.75250244140625	2	487.75241	973.490267	0.7322	0.00035713	-0.78068	-0.00038078	-0.04848	-2.3646E-05	487.75201026398764	26.944	0.21191	26.944	26.847	27.058	0					10	5	2	0	0	0	0.33044	1	9364	9364		47.657	4.7931	1	293380			37632	2151	25834	25925	38092	38092					0.0024612130015384537
SPTTIQVTY	9	Unmodified	_SPTTIQVTY_					0	0	0		ENST00000483282.1_1_1:154179931-154180985:-|nuORF;nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	ENST00000483282.1_1_1:154179931-154180985:-|nuORF	ENST00000483282.1_1_1:154179931-154180985:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2643127441406	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.049	1	42.049	41.549	42.549	0								0	0	0	0.11184	1	14742	14742		68.787	4.5796	1				37633	4569	25835	25926	38093	38093					0.008860439694444722
SPTTLKPLR	9	Unmodified	_SPTTLKPLR_					0	0	0		ENST00000442011.6_1_5:135379800-135382117:+|nuORF	ENST00000442011.6_1_5:135379800-135382117:+|nuORF	ENST00000442011.6_1_5:135379800-135382117:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.81866455078125	2	506.811116	1011.60768	0.85928	0.00043549	0.45635	0.00023128	1.3156	0.00066678	506.8106713270939	29.554	0.42154	29.554	29.324	29.745	0					37	10	4	0	0	0	0.34452	1	10628	10628		31.53	0	1	861870			37634	9586	25836	25927	38094	38094					0.1023402223128187
SPVCEKTLY	9	Carbamidomethyl (C)	_SPVC(Carbamidomethyl (C))EKTLY_	SPVC(1)EKTLY		SPVC(85)EKTLY		0	1	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7716674804688	2	548.7708	1095.52705	0.61319	0.0003365	0.89959	0.00049367	1.5128	0.00083017	548.7712038909268	29.336	0.14484	29.336	29.251	29.396	0					5	3	2	0	0	0	0.078509	1	10845	10845		85.161	8.3867	1	96912			37635	1705	25837	25928	38095	38095	71				-0.016896268739174047
SPVENKEVY	9	Unmodified	_SPVENKEVY_					0	0	0		ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7671508789062	2	532.766571	1063.51859	1.0625	0.00056609	-0.43417	-0.00023131	0.62837	0.00033477	532.7666932675677	24.419	0.2666	24.419	24.31	24.577	0					9	5	2	0	0	0	0.35021	1	8560	8560		45.972	1.5951	1	175040			37636	6420	25838	25929	38096	38096					-0.010628575189002731
SPVENKEVY	9	Unmodified	_SPVENKEVY_					0	0	0		ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7670288085938	2	532.766571	1063.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.419	1	24.419	23.919	24.919	0								0	0	0	0.24544	1	8421	8421		44.377	1.9027	1				37637	6420	25838	25929	38097	38097					-0.010628575189002731
SPVETLAATR	10	Unmodified	_SPVETLAATR_					0	0	0			REV__KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant	REV__KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7894897460938	2	522.787838	1043.56112	1.7977	0.00093979	2.6635	0.0013925	4.4612	0.0023323	522.78918606722	41.889	0.55032	41.889	41.564	42.114	0					38	24	2	0	0	0	0.62235	1	16372	16372		31.53	3.6476	1	95374	+		37638	16760	25839	25930	38098	38098					0.04108537609317864
SPVLPAALDAV	11	Unmodified	_SPVLPAALDAV_					0	0	0		nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.8029174804688	2	526.802957	1051.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.394	1	42.394	41.894	42.894	0								0	0	0	0.31508	1	16639	16639		32.812	7.2384	1				37639	11432	25840	25931	38099	38099					0.06762896274517516
SPVLRLFF	8	Unmodified	_SPVLRLFF_					0	0	0		F9|p.C157Vfs*46|1|0.3|ENSG00000101981|chrX:139548438-139548438|C/-|frameshift_variant;F9|p.N147Kfs*60|1|0.03|ENSG00000101981|chrX:139548411-139548412|-/GTACATGGAAC|frameshift_variant	F9|p.C157Vfs*46|1|0.3|ENSG00000101981|chrX:139548438-139548438|C/-|frameshift_variant	F9|p.C157Vfs*46|1|0.3|ENSG00000101981|chrX:139548438-139548438|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	326.86273193359375	3	326.863889	977.569838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.606	1	23.606	23.106	24.106	0								0	0	0	1.7419	1	7115	7115		25.574	1.3713	1				37640	11124	25841	25932	38100	38100					0.08015556036468752
SPVNSSKQPSY	11	Unmodified	_SPVNSSKQPSY_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	597.293701171875	2	597.293485	1192.57242	1.545	0.00092283	-0.54704	-0.00032674	0.99799	0.00059609	597.2932611362143	21.844	0.26281	21.844	21.771	22.034	0					11	7	2	0	0	0	0.21827	1	6090	6090		72.096	34.284	1	164830			37641	10164	25842	25933	38101	38101					-0.01616685087174119
SPVNSSKQPSY	11	Unmodified	_SPVNSSKQPSY_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.2935180664062	2	597.293485	1192.57242	0.68689	0.00041027	-0.54712	-0.00032679	0.13977	8.3483E-05	597.2930633103402	22.141	0.41492	22.141	22.031	22.446	0					24	9	3	0	0	0	6.937E-06	1	7151	7151		181.87	116.41	1	1087500			37642	10164	25842	25933	38102	38102					-0.01616685087174119
SPVNSSKQPSY	11	Unmodified	_SPVNSSKQPSY_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.2935180664062	2	597.293485	1192.57242	-0.56235	-0.00033589	0.74565	0.00044537	0.1833	0.00010949	597.2938934122088	21.855	0.36239	21.855	21.746	22.108	0					27	11	3	0	0	0	0.0092585	1	6352	6352		125.68	72.745	1	275450			37643	10164	25842	25933	38103	38103					-0.01616685087174119
SPVNSSKQPSY	11	Unmodified	_SPVNSSKQPSY_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	597.2936401367188	2	597.293485	1192.57242	1.2276	0.00073326	-1.0184	-0.00060826	0.20927	0.00012499	597.292651870549	22.014	0.70929	22.014	21.858	22.567	0					35	14	4	0	0	0	1.0526E-05	1	7427	7427		176.6	121.82	1	1917100			37644	10164	25842	25933	38104	38104					-0.01616685087174119
SPVNSSKQPSY	11	Unmodified	_SPVNSSKQPSY_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.2935180664062	2	597.293485	1192.57242	0.48622	0.00029042	-0.74367	-0.00044419	-0.25745	-0.00015377	597.2930950581181	21.948	0.41027	21.948	21.806	22.216	0					17	9	3	0	0	0	0.0012162	1	6443	6443		131.09	83.43	1	189460			37645	10164	25842	25933	38105	38105					-0.01616685087174119
SPVNSSKQPSY	11	Unmodified	_SPVNSSKQPSY_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.29345703125	2	597.293485	1192.57242	-1.8372	-0.0010973	2.1149	0.0012632	0.27774	0.00016589	597.2944695587082	21.933	0.36471	21.933	21.837	22.202	0					19	8	3	0	0	0	0.056425	1	6459	6459		102.06	47.285	1	196310			37646	10164	25842	25933	38106	38106					-0.01616685087174119
SPVPELGLLG	10	Unmodified	_SPVPELGLLG_					0	0	0			REV__nc|ENSG00000172059|O14901-2|KLF11	REV__nc|ENSG00000172059|O14901-2|KLF11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.28265380859375	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.312	1	40.312	39.812	40.812	0								0	0	0	0.35368	1	15883	15883		42.396	3.1433	1		+		37647	16448	25843	25934	38107	38107					0.06319224728758854
SPVQVKTAY	9	Unmodified	_SPVQVKTAY_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7742919921875	2	496.7742	991.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.716	1	26.716	26.216	27.216	0								0	0	0	0.045272	1	9250	9250		88.177	34.825	1				37648	7873	25844	25935	38108	38108					0.037740540689469526
SPVSKGILQY	10	Unmodified	_SPVSKGILQY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.3089599609375	2	546.308406	1090.60226	1.2072	0.00065952	-0.5508	-0.00030091	0.65643	0.00035862	546.3081493630723	36.049	0.22906	36.049	35.951	36.18	0					19	10	3	0	0	0	0.4287	1	11804	11804		53.089	8.7118	1	238940			37649	5985	25845	25936	38109	38109					0.06058298648827076
SPVSKGILQY	10	Unmodified	_SPVSKGILQY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3087158203125	2	546.308406	1090.60226	0.42725	0.00023341	0.29382	0.00016052	0.72107	0.00039392	546.3087285658534	36.32	0.51331	36.32	36.161	36.674	0					23	14	3	0	0	0	0.12383	1	13662	13662		91.265	16.222	1	1343000			37650	5985	25845	25936	38110	38110					0.06058298648827076
SPVSKGILQY	10	Unmodified	_SPVSKGILQY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.30859375	2	546.308406	1090.60226	0.48071	0.00026261	-0.05495	-3.002E-05	0.42576	0.00023259	546.3084154050562	36.078	0.31496	36.078	35.987	36.302	0					28	14	3	0	0	0	0.092915	1	12207	12207		96.665	13.915	1	420260			37651	5985	25845	25936	38111	38111					0.06058298648827076
SPVSKGILQY	10	Unmodified	_SPVSKGILQY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3077392578125	2	546.308406	1090.60226	1.8753	0.0010245	-1.778	-0.00097134	0.097263	5.3135E-05	546.3074934251397	36.32	0.37009	36.32	36.202	36.572	0					29	10	4	0	0	0	0.12383	2	14112	14112;14192		91.265	29.158	1	2729500			37652	5985	25845	25936	38112;38113	38112					0.06058298648827076
SPVSKGILQY	10	Unmodified	_SPVSKGILQY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3084716796875	2	546.308406	1090.60226	1.1268	0.00061558	-0.29855	-0.0001631	0.82825	0.00045248	546.3081323509646	36.07	0.30214	36.07	35.98	36.282	0					22	10	3	0	0	0	0.14893	1	12884	12884		86.882	9.564	1	298660			37653	5985	25845	25936	38114	38114					0.06058298648827076
SPVSKGILQY	10	Unmodified	_SPVSKGILQY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.3074340820312	2	546.308406	1090.60226	1.9205	0.0010492	-1.6388	-0.0008953	0.28165	0.00015387	546.3076008056661	36.225	0.5658	36.225	36.064	36.63	0					29	11	4	0	0	0	0.13663	1	14043	14043		89.029	37.836	1	3803000			37654	5985	25845	25936	38115	38115					0.06058298648827076
SPVSSLEPPML	11	Unmodified	_SPVSSLEPPML_					0	0	0		ENST00000306801.7_1_17:78938830-78939313:+|nuORF	ENST00000306801.7_1_17:78938830-78939313:+|nuORF	ENST00000306801.7_1_17:78938830-78939313:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.8002319335938	2	578.799557	1155.58456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.215	1	41.215	40.715	41.715	0								0	0	0	0.40299	1	15670	15670		36.447	2.5251	1				37655	8523	25846	25937	38116	38116					0.012992153316645272
SPVTAPRVR	9	Unmodified	_SPVTAPRVR_					0	0	0		ENST00000267079.6_1_12:53881161-53893393:-|nuORF	ENST00000267079.6_1_12:53881161-53893393:-|nuORF	ENST00000267079.6_1_12:53881161-53893393:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	328.1977844238281	3	328.197931	981.571963	-0.66757	-0.0002191	0.52236	0.00017144	-0.14521	-4.7658E-05	328.1980949889515	24.058	0.1665	24.058	23.96	24.126	0					12	5	3	0	0	0	0.61124	1	7319	7319		18.262	0	1	309740			37656	8359	25847	25938	38117	38117					0.08043984774280943
SPVTETRTY	9	Unmodified	_SPVTETRTY_					0	0	0		ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL;nc|ENSG00000102445|Q9H714-1|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL	ENST00000441284.5_2_13:46917522-46942212:-|nuORF	ENST00000441284.5_2_13:46917522-46942212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2645263671875	2	527.264196	1052.51384	2.0932	0.0011037	-1.0554	-0.00055648	1.0378	0.00054718	527.2635554453402	23.653	0.18611	23.653	23.565	23.751	0					9	4	3	0	0	0	0.070005	1	7874	7874		88.177	40.52	1	619120			37657	2172	25848	25939	38118	38118					-0.010317416616544506
SPVTETRTY	9	Unmodified	_SPVTETRTY_					0	0	0		ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL;nc|ENSG00000102445|Q9H714-1|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL	ENST00000441284.5_2_13:46917522-46942212:-|nuORF	ENST00000441284.5_2_13:46917522-46942212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2644653320312	2	527.264196	1052.51384	0.94291	0.00049716	-0.084521	-4.4565E-05	0.85839	0.0004526	527.2641168642274	23.57	0.11576	23.57	23.513	23.629	0					6	2	3	0	0	0	0.017421	1	8149	8149		126.24	71.466	1	354160			37658	2172	25848	25939	38119	38119					-0.010317416616544506
SPVTLKEAY	9	Unmodified	_SPVTLKEAY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.27386474609375	2	504.274032	1006.53351	0.096764	4.8795E-05	-0.033253	-1.6768E-05	0.063511	3.2027E-05	504.2739307716193	31.052	0.25265	31.052	30.949	31.202	0					11	5	3	0	0	0	0.095583	1	11662	11662		80.455	3.6805	1	326400			37659	6964	25849	25940	38120	38120					0.030506343490856125
SPVTLKEAY	9	Unmodified	_SPVTLKEAY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.27386474609375	2	504.274032	1006.53351	-0.38098	-0.00019212	0.34703	0.000175	-0.033947	-1.7118E-05	504.27416747666024	30.986	0.30976	30.986	30.831	31.141	0					15	6	4	0	0	0	0.02953	1	11522	11522		109.48	21.724	1	802030			37660	6964	25849	25940	38121	38121					0.030506343490856125
SPVTPVPTM	9	Unmodified	_SPVTPVPTM_					0	0	0		FOXA3|p.P52Lfs*87|1|0.2|ENSG00000170608|chr19:45872156-45872156|C/-|frameshift_variant;ENSG00000170608|ENST00000302177|FOXA3	FOXA3|p.P52Lfs*87|1|0.2|ENSG00000170608|chr19:45872156-45872156|C/-|frameshift_variant	FOXA3|p.P52Lfs*87|1|0.2|ENSG00000170608|chr19:45872156-45872156|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7444152832031	2	464.744053	927.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.157	1	39.157	38.657	39.657	0								0	0	0	0.23459	1	15390	15390		45.952	8.7928	1				37661	6250	25850	25941	38122	38122					0.006916204142157767
SPVVLQNDR	9	Unmodified	_SPVVLQNDR_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.2803344726562	2	514.28018	1026.54581	0.086665	4.457E-05	0.26763	0.00013764	0.3543	0.00018221	514.2803369528262	17.877	0.37648	17.877	17.757	18.133	0					20	10	5	0	0	0	0.032052	1	4337	4337		107.01	27.295	1	6553400	+		37662	17650	25851	25942	38123	38123					0.033596708121422125
SPVVLQNDR	9	Unmodified	_SPVVLQNDR_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2802734375	2	514.28018	1026.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.136	1	18.136	17.636	18.636	0								0	0	0	0.088368	1	5249	5249		75.043	3.1658	1		+		37663	17650	25851	25942	38124	38124					0.033596708121422125
SPVVLQNDR	9	Unmodified	_SPVVLQNDR_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2803344726562	2	514.28018	1026.54581	0.0078299	4.0268E-06	0.15247	7.841E-05	0.1603	8.2437E-05	514.2802344437788	17.863	0.24482	17.863	17.782	18.026	0					13	6	4	0	0	0	0.032052	1	4553	4553		107.01	24.767	1	7971100	+		37664	17650	25851	25942	38125	38125					0.033596708121422125
SPVVLQNDR	9	Unmodified	_SPVVLQNDR_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2803955078125	2	514.28018	1026.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.099	1	18.099	17.599	18.599	0								0	0	0	0.0537	1	5496	5496		85.161	8.3867	1		+		37665	17650	25851	25942	38126	38126					0.033596708121422125
SPWTSCKSGA	10	Carbamidomethyl (C)	_SPWTSC(Carbamidomethyl (C))KSGA_	SPWTSC(1)KSGA		SPWTSC(41)KSGA		0	1	0		ENSG00000196859|ENST00000355612|KRT39;CON__Q6IFU6	ENSG00000196859|ENST00000355612|KRT39	ENSG00000196859|ENST00000355612|KRT39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7434692382812	2	540.742573	1079.47059	0.30921	0.0001672	1.31	0.00070835	1.6192	0.00087555	540.7433375001126	13.679	0.19918	13.679	13.625	13.824	0					9	4	3	0	0	0	0.536	1	3396	3396		41.427	7.2541	1	1023300		+	37666	664	25852	25943	38127	38127	22				-0.0659625471059826
SPYGGGHAL	9	Unmodified	_SPYGGGHAL_					0	0	0		nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11;nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11	nc|ENSG00000187634|Q96NU1-1|SAMD11	nc|ENSG00000187634|Q96NU1-1|SAMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.70831298828125	2	429.70886	857.403166	0.23072	9.9144E-05	-1.1386	-0.00048925	-0.90784	-0.00039011	429.70838202769085	24.379	0.20027	24.379	24.277	24.478	0					7	4	2	0	0	0	0.13483	1	8211	8211		71.378	30.805	1	214130			37667	7207	25853	25944	38128	38128					-0.031239168592492206
SPYGGGHAL	9	Unmodified	_SPYGGGHAL_					0	0	0		nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11;nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11	nc|ENSG00000187634|Q96NU1-1|SAMD11	nc|ENSG00000187634|Q96NU1-1|SAMD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.70867919921875	2	429.70886	857.403166	-0.51279	-0.00022035	0.41234	0.00017718	-0.10045	-4.3165E-05	429.7089651659842	24.334	0.21492	24.334	24.262	24.477	0					7	4	2	0	0	0	0.23186	1	8509	8509		57.811	57.811	1	104790			37668	7207	25853	25944	38129	38129					-0.031239168592492206
SPYGTALTTF	10	Unmodified	_SPYGTALTTF_					0	0	0			REV__nc|ENSG00000080854|Q9UPX0|IGSF9B	REV__nc|ENSG00000080854|Q9UPX0|IGSF9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2639770507812	2	529.263665	1056.51278	0.48226	0.00025524	0.74421	0.00039388	1.2265	0.00064913	529.2640536498841	37.521	0.12306	37.521	37.445	37.568	0					11	6	2	0	0	0	0.44469	1	12280	12280		51.335	9.9088	1	120290	+		37669	13300	25854	25945	38130	38130					-0.013219560305969935
SPYYHMFT	8	Oxidation (M)	_SPYYHM(Oxidation (M))FT_		SPYYHM(1)FT		SPYYHM(53)FT	0	0	1			REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.48486328125	3	354.484749	1060.43242	-2.0099	-0.00071249	1.2692	0.00044992	-0.74071	-0.00026257	354.485448576466	25.105	0.18136	25.105	25.029	25.21	0					7	4	2	0	0	0	0.5676	1	7952	7952		53.351	17.733	1	71246	+		37670	12081	25855	25946	38131	38131		471			-0.09538140625272717
SQAAAEGVSEL	11	Unmodified	_SQAAAEGVSEL_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.260498046875	2	531.259111	1060.50367	-0.1548	-8.2239E-05	2.8393	0.0015084	2.6845	0.0014262	531.260338170593	28.469	0.17465	28.469	28.407	28.581	0					10	6	2	0	0	0	0.046871	1	9175	9175		106.68	2.6263	1	150960			37671	6728	25856	25947	38132	38132					-0.024163493868854857
SQAAAEGVSEL	11	Unmodified	_SQAAAEGVSEL_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.260009765625	2	531.259111	1060.50367	-1.233	-0.00065504	2.5496	0.0013545	1.3166	0.00069945	531.2603139860882	28.527	0.16676	28.527	28.432	28.599	0					8	4	2	0	0	0	0.063642	1	9485	9485		98.582	18.869	1	131640			37672	6728	25856	25947	38133	38133					-0.024163493868854857
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7402038574219	2	476.740357	951.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.528	1	27.528	27.028	28.028	0								0	0	0	0.11963	1	9626	9626		66.962	8.732	1				37673	11586	25857	25948	38134	38134					-0.011513958618706965
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.74102783203125	2	476.740357	951.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.295	1	27.295	26.795	27.795	0								0	0	0	0.11963	1	8682	8682		66.962	6.8437	1				37674	11586	25857	25948	38135	38135					-0.011513958618706965
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7400817871094	2	476.740357	951.46616	-0.11824	-5.6372E-05	-0.55178	-0.00026305	-0.67002	-0.00031943	476.74003159967	27.531	0.3085	27.531	27.422	27.73	0					15	6	3	0	0	0	0.12278	1	9994	9994		74.165	15.919	1	752830			37675	11586	25857	25948	38136	38136					-0.011513958618706965
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.74102783203125	2	476.740357	951.46616	-0.049553	-2.3624E-05	-0.0083665	-3.9887E-06	-0.05792	-2.7613E-05	476.74045533756356	27.353	0.18051	27.353	27.262	27.443	0					7	4	2	0	0	0	0.27249	1	8946	8946		52.937	0	1	76271			37676	11586	25857	25948	38137	38137					-0.011513958618706965
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7398986816406	2	476.740357	951.46616	-0.6321	-0.00030135	0.83515	0.00039815	0.20305	9.6803E-05	476.7408001896394	27.504	0.37212	27.504	27.357	27.729	0					16	7	4	0	0	0	0.18505	1	9843	9843		63.426	2.4545	1	824090			37677	11586	25857	25948	38138	38138					-0.011513958618706965
SQADMQSRK	9	Unmodified	_SQADMQSRK_					0	0	0		nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74;ENST00000270720.11_1_1:1887019-1905630:-|nuORF;nc|ENSG00000142609|Q9C0B2-2|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7555541992188	2	525.753472	1049.49239	1.3649	0.00071761	2.1647	0.0011381	3.5296	0.0018557	525.7548447124684	29.147	0.15639	29.147	29.068	29.224	0					8	5	2	0	0	0	0.50858	1	9174	9174		31.53	1.9791	1	40323			37678	4501	25858	25949	38139	38139					-0.03037449962039318
SQAEALLMK	9	Unmodified	_SQAEALLMK_					0	0	0		ENSG00000169519|ENST00000407364|METTL15;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-4|METTL15	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7685241699219	2	495.76806	989.521567	0.53672	0.00026609	-0.052201	-2.588E-05	0.48452	0.00024021	495.768043009152	32.079	0.17901	32.079	31.988	32.167	0					6	4	2	0	0	0	0.010427	1	11733	11733		140.11	10.691	1	119920			37679	6169	25859	25950	38140	38140					0.02638694334268621
SQAEALLMK	9	Unmodified	_SQAEALLMK_					0	0	0		ENSG00000169519|ENST00000407364|METTL15;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-4|METTL15	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7676086425781	2	495.76806	989.521567	-0.036991	-1.8339E-05	-0.83642	-0.00041467	-0.87341	-0.00043301	495.76767617909087	32.055	0.19688	32.055	31.961	32.157	0					8	4	3	0	0	0	0.022698	1	12136	12136		117.53	21.492	1	223710			37680	6169	25859	25950	38141	38141					0.02638694334268621
SQAEALLMK	9	Unmodified	_SQAEALLMK_					0	0	0		ENSG00000169519|ENST00000407364|METTL15;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-4|METTL15	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7688293457031	2	495.76806	989.521567	-0.66863	-0.00033149	1.1037	0.00054719	0.43509	0.00021571	495.7687611540636	32.008	0.21567	32.008	31.869	32.085	0					7	4	2	0	0	0	0.067603	1	12025	12025		89.029	20.183	1	179990			37681	6169	25859	25950	38142	38142					0.02638694334268621
SQAEIYHNR	9	Unmodified	_SQAEIYHNR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2733154296875	2	559.272887	1116.53122	0.5178	0.00028959	0.26161	0.00014631	0.77941	0.00043591	559.2729702095382	17.589	0.16914	17.589	17.488	17.658	0					5	4	2	0	0	0	0.18416	1	5011	5011		63.534	31.9	1	282860			37682	2828	25860	25951	38143	38143					-0.022384013360351673
SQAEIYHNR	9	Unmodified	_SQAEIYHNR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.2735595703125	2	559.272887	1116.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.603	1	17.603	17.103	18.103	0								0	0	0	0.14961	1	5257	5257		59.931	27.118	1				37683	2828	25860	25951	38144	38144					-0.022384013360351673
SQAFFKLK	8	Unmodified	_SQAFFKLK_					0	0	0		ENST00000451020.6_1_4:419554-419923:-|nuORF	ENST00000451020.6_1_4:419554-419923:-|nuORF	ENST00000451020.6_1_4:419554-419923:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.7799377441406	2	484.781828	967.549102	-2.9161	-0.0014137	-0.63278	-0.00030676	-3.5489	-0.0017204	484.78152468688404	13.682	0.09298	13.682	13.612	13.705	0					8	5	2	0	0	0	0.64144	1	2776	2776		42.396	6.7778	1	110400			37684	9649	25861	25952	38145	38145					0.06402965656798187
SQAFPSVSK	9	Unmodified	_SQAFPSVSK_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.750732421875	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.06	1	26.06	25.56	26.56	0								0	0	0	0.28191	1	7874	7874		38.754	3.1353	1				37685	11455;11456	25862	25953	38146	38146					0.010131945178159185
SQAFPSVSK	9	Unmodified	_SQAFPSVSK_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7507019042969	2	475.750724	949.486896	0.61662	0.00029336	0.22663	0.00010782	0.84325	0.00040118	475.7504394210078	26.306	0.22025	26.306	26.175	26.395	0					12	5	3	0	0	0	0.24169	1	9030	9030		56.632	1.9099	1	209520			37686	11455;11456	25862	25953	38147	38147					0.010131945178159185
SQAGHTLHH	9	Unmodified	_SQAGHTLHH_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2;PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2413024902344	2	494.24139	986.468226	-0.45837	-0.00022655	0.045442	2.2459E-05	-0.41293	-0.00020409	494.2415301598671	12.964	0.085967	12.964	12.92	13.006	0					4	2	2	0	0	0	0.095583	1	2848	2848		84.916	26.134	1	437110			37687	1294	25863	25954	38148	38148					-0.02554922333399645
SQAGHTLHH	9	Unmodified	_SQAGHTLHH_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2;PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.24127197265625	2	494.24139	986.468226	-0.7524	-0.00037187	0.11782	5.8229E-05	-0.63458	-0.00031364	494.2417173277084	12.963	0.14194	12.963	12.87	13.012	0					7	3	3	0	0	0	0.19952	1	3054	3054		64.207	9.4426	1	326440			37688	1294	25863	25954	38149	38149					-0.02554922333399645
SQAGVYTGK	9	Unmodified	_SQAGVYTGK_					0	0	0		ENST00000375743.8_1_1:16299537-16302484:-|nuORF	ENST00000375743.8_1_1:16299537-16302484:-|nuORF	ENST00000375743.8_1_1:16299537-16302484:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.7346496582031	2	455.735074	909.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.298	1	18.298	17.798	18.798	0								0	0	0	0.3063	1	5326	5326		33.922	6.0394	1				37689	9034	25864	25955	38150	38150					-0.0027537851628949284
SQALFVGLK	9	Unmodified	_SQALFVGLK_					0	0	0			REV__nc|ENSG00000205879|Q658T7|FAM90A2P	REV__nc|ENSG00000205879|Q658T7|FAM90A2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7869567871094	2	481.78711	961.559667	-0.62314	-0.00030022	0.86475	0.00041663	0.24162	0.00011641	481.78723820586043	39.193	0.23791	39.193	39.079	39.317	0					6	5	2	0	0	0	0.38666	1	15474	15474		42.864	3.6114	1	45362	+		37690	21197	25865	25956	38151	38151					0.07734948311235712
SQANIAQVL	9	Unmodified	_SQANIAQVL_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000100280|Q10567-4|AP1B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2637634277344	2	472.263999	942.513445	0.2093	9.8845E-05	-0.0014022	-6.6223E-07	0.2079	9.8183E-05	472.26414549717884	42.804	0.26549	42.804	42.73	42.995	0					21	13	2	0	0	0	0.12834	1	16192	16192		72.879	18.103	1	112300			37691	1994;176	25866	25957	38152	38152					0.03988883409135724
SQANVSRAK	9	Unmodified	_SQANVSRAK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000253506|ENST00000521764|NACA2	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7643127441406	2	480.764697	959.514842	-0.51341	-0.00024683	-0.27662	-0.00013299	-0.79002	-0.00037981	480.7645822852933	12.34	0.37588	12.34	12.254	12.63	0					12	9	2	0	0	0	0.010427	1	2755	2755		140.11	24.618	1	1434800			37692	7376	25867	25958	38153	38153					0.033465174979028234
SQAPKAFNK	9	Unmodified	_SQAPKAFNK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.77166748046875	2	495.771991	989.529429	0.056487	2.8005E-05	0.48437	0.00024014	0.54086	0.00026814	495.77218535508064	16.668	0.15367	16.668	16.605	16.759	0					12	5	3	0	0	0	0.19605	1	3831	3831		62.107	1.9892	1	264960			37693	1941	25868	25959	38154	38154					0.034245896460333825
SQAPKAFNK	9	Unmodified	_SQAPKAFNK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.77191162109375	2	495.771991	989.529429	-0.037153	-1.8419E-05	-0.45236	-0.00022427	-0.48952	-0.00024269	495.7717469676156	16.921	0.2626	16.921	16.818	17.081	0					15	5	4	0	0	0	0.0406	1	4919	4919		98.629	4.623	1	3950800			37694	1941	25868	25959	38155	38155					0.034245896460333825
SQAPKAFNK	9	Unmodified	_SQAPKAFNK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7716369628906	2	495.771991	989.529429	0.043932	2.178E-05	-0.42109	-0.00020877	-0.37716	-0.00018699	495.77184691004265	16.73	0.16089	16.73	16.673	16.834	0					14	5	3	0	0	0	0.023928	1	4031	4031		115.49	27.74	1	395240			37695	1941	25868	25959	38156	38156					0.034245896460333825
SQAPKAFNK	9	Unmodified	_SQAPKAFNK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7718811035156	2	495.771991	989.529429	-0.67141	-0.00033286	0.30998	0.00015368	-0.36143	-0.00017919	495.7721562000292	16.9	0.46259	16.9	16.747	17.209	0					21	9	4	0	0	0	0.098791	1	4761	4761		79.713	17.605	1	4893700			37696	1941	25868	25959	38157	38157					0.034245896460333825
SQAPVNKPK	9	Unmodified	_SQAPVNKPK_					0	0	0		nc|ENSG00000169925|Q15059-2|BRD3;ENSG00000169925|ENST00000303407|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7796630859375	2	484.779816	967.545079	-0.2214	-0.00010733	-0.37781	-0.00018316	-0.59921	-0.00029049	484.7796453132347	13.931	0.21333	13.931	13.848	14.061	0					12	5	3	0	0	0	0.048471	1	3271	3271		95.815	29.386	1	1671800			37697	6197	25869	25960	38158	38158					0.06000876163091107
SQAPVRILP	9	Unmodified	_SQAPVRILP_					0	0	0		ENST00000440097.5_1_3:45636669-45636975:+|nuORF	ENST00000440097.5_1_3:45636669-45636975:+|nuORF	ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7977294921875	2	490.798009	979.581465	-0.13468	-6.6102E-05	0.35584	0.00017464	0.22115	0.00010854	490.79828522231634	35.29	0.29287	35.29	35.099	35.392	0					23	14	2	0	0	0	0.39215	1	11557	11557		42.396	6.7778	1	111950			37698	9569	25870	25961	38159	38159					0.09085753059810031
SQAPVRILP	9	Unmodified	_SQAPVRILP_					0	0	0		ENST00000440097.5_1_3:45636669-45636975:+|nuORF	ENST00000440097.5_1_3:45636669-45636975:+|nuORF	ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7982482910156	2	490.798009	979.581465	-0.066276	-3.2528E-05	0.26148	0.00012833	0.1952	9.5806E-05	490.798136240894	35.53	0.37105	35.53	35.359	35.73	0					24	10	3	0	0	0	0.24095	1	13775	13775		56.721	1.2168	1	282110			37699	9569	25870	25961	38160	38160					0.09085753059810031
SQAQATISFPK	11	Unmodified	_SQAQATISFPK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6;CDC6|p.P86Lfs*17|1|0.14|ENSG00000094804|chr17:40291132-40291132|C/-|frameshift_variant	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.3153076171875	2	589.31422	1176.61389	-0.14667	-8.6433E-05	-0.16344	-9.6318E-05	-0.31011	-0.00018275	589.3141325759918	33.066	0.31274	33.066	32.864	33.176	0					11	7	2	0	0	0	0.13158	1	12604	12604		82.494	33.053	1	100730			37700	1887	25871	25962	38161	38161					0.0326449567214695
SQARGLCVRSQ	11	Unmodified	_SQARGLCVRSQ_					0	0	0			REV__ENSG00000143851|ENST00000691036|PTPN7	REV__ENSG00000143851|ENST00000691036|PTPN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.2123718261719	3	402.212023	1203.61424	0.94846	0.00038148	-0.67152	-0.00027009	0.27694	0.00011139	402.21187053330004	17.78	1.1194	17.78	17.696	18.816	0					82	26	4	0	0	0	0.69004	1	5428	5428		28.577	0.93281	1	27551000	+		37701	15212	25872	25963	38162	38162					0.020575921203544567
SQCDAIRVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DAIRVTK_	SQC(1)DAIRVTK		SQC(65)DAIRVTK		0	1	0		ENSG00000120008|ENST00000263461|WDR11;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.2048034667969	3	393.204645	1176.59211	0.70841	0.00027855	-1.0073	-0.00039609	-0.29892	-0.00011754	393.20426934302463	20.313	0.11199	20.313	20.21	20.322	0					6	2	3	0	0	0	0.31784	1	6272	6272		65.278	7.0313	1	428620			37702	3154	25873	25964	38163	38163	123				0.010873676518940556
SQCDAIRVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DAIRVTK_	SQC(1)DAIRVTK		SQC(69)DAIRVTK		0	1	0		ENSG00000120008|ENST00000263461|WDR11;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.20477294921875	3	393.204645	1176.59211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.213	1	20.213	19.713	20.713	0								0	0	0	0.16384	1	6516	6516		68.626	18.592	1				37703	3154	25873	25964	38164	38164	123				0.010873676518940556
SQCDAIRVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DAIRVTK_	SQC(1)DAIRVTK		SQC(110)DAIRVTK		0	1	0		ENSG00000120008|ENST00000263461|WDR11;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.3035888671875	2	589.303329	1176.59211	3.1843	0.0018765	-2.9852	-0.0017592	0.19908	0.00011732	589.3016587715022	20.217	0.16546	20.217	20.111	20.277	0					6	3	2	0	0	0	0.062358	1	6399	6399		105.17	43.4	1	882100			37704	3154	25873	25964	38165	38165	123				0.010873676518940556
SQCDSPYVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DSPYVTK_	SQC(1)DSPYVTK		SQC(64)DSPYVTK		0	1	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000481288.1_1_13:99161185-99171658:-|nuORF	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.7671508789062	2	592.766245	1183.51794	1.5313	0.00090772	-0.27643	-0.00016386	1.2549	0.00074387	592.7661198392703	21.254	0.15276	21.254	21.173	21.326	0					7	4	2	0	0	0	0.33224	1	5830	5830		63.694	21.356	1	79472			37705	2178	25874	25965	38166	38166	86				-0.06648020230295515
SQCDSPYVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DSPYVTK_	SQC(1)DSPYVTK		SQC(110)DSPYVTK		0	1	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000481288.1_1_13:99161185-99171658:-|nuORF	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.7664184570312	2	592.766245	1183.51794	0.87589	0.0005192	-0.68072	-0.00040351	0.19517	0.00011569	592.765868324956	21.571	0.19108	21.571	21.474	21.665	0					10	4	3	0	0	0	0.046394	1	6889	6889		110.54	36.376	1	821810			37706	2178	25874	25965	38167	38167	86				-0.06648020230295515
SQCDSPYVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DSPYVTK_	SQC(1)DSPYVTK		SQC(59)DSPYVTK		0	1	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000481288.1_1_13:99161185-99171658:-|nuORF	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.7660522460938	2	592.766245	1183.51794	-0.53953	-0.00031981	0.80478	0.00047705	0.26525	0.00015723	592.7666019957919	21.3	0.20002	21.3	21.193	21.393	0					11	6	2	0	0	0	0.3783	1	6077	6077		58.63	18.571	1	194770			37707	2178	25874	25965	38168	38168	86				-0.06648020230295515
SQCDSPYVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DSPYVTK_	SQC(1)DSPYVTK		SQC(180)DSPYVTK		0	1	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000481288.1_1_13:99161185-99171658:-|nuORF	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.7664794921875	2	592.766245	1183.51794	1.5349	0.00090981	-1.3085	-0.00077565	0.22632	0.00013415	592.7655050118548	21.466	0.31731	21.466	21.357	21.675	0					17	6	4	0	0	0	0.0010491	1	7132	7132		181.87	50.257	1	1461800			37708	2178	25874	25965	38169	38169	86				-0.06648020230295515
SQCDSPYVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DSPYVTK_	SQC(1)DSPYVTK		SQC(150)DSPYVTK		0	1	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000481288.1_1_13:99161185-99171658:-|nuORF	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.7664794921875	2	592.766245	1183.51794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.371	1	21.371	20.871	21.871	0								0	0	0	0.0016505	1	6183	6183		147.3	58.274	1				37709	2178	25874	25965	38170	38170	86				-0.06648020230295515
SQCDSPYVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DSPYVTK_	SQC(1)DSPYVTK		SQC(56)DSPYVTK		0	1	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000481288.1_1_13:99161185-99171658:-|nuORF	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.76611328125	2	592.766245	1183.51794	-1.7911	-0.0010617	2.2988	0.0013626	0.50766	0.00030093	592.767479664056	21.338	0.15734	21.338	21.278	21.435	0					5	3	2	0	0	0	0.40476	1	6177	6177		55.721	17.91	1	122650			37710	2178	25874	25965	38171	38171	86				-0.06648020230295515
SQCDSPYVTK	10	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))DSPYVTK_	SQC(1)DSPYVTK		SQC(170)DSPYVTK		0	1	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000481288.1_1_13:99161185-99171658:-|nuORF	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.7666015625	2	592.766245	1183.51794	1.4667	0.00086941	-1.2103	-0.00071741	0.25642	0.00015199	592.7656772655272	21.479	0.31692	21.479	21.37	21.687	0					16	6	4	0	0	0	0.0036876	1	7009	7009		169.99	55.135	1	1410600			37711	2178	25874	25965	38172	38172	86				-0.06648020230295515
SQCEFSMGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))EFSMGK_	SQC(1)EFSMGK		SQC(70)EFSMGK		0	1	0		ENST00000487570.1_1_3:63824036-63825384:-|nuORF;THOC7|p.Q105Afs*16|1|0.29|ENSG00000163634|chr3:63838016-63838017|-/T|frameshift_variant;THOC7|p.N115Kfs*6|1|0.12|ENSG00000163634|chr3:63837983-63837984|-/T|frameshift_variant;THOC7|p.M198Ifs*5|1|0.05|ENSG00000163634|chr3:63834152-63834153|CC/-|frameshift_variant;ENSG00000163634|ENST00000295899|THOC7	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.22314453125	2	537.223159	1072.43177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.578	1	26.578	26.078	27.078	0								0	0	0	0.10497	1	8095	8095		70.399	24.426	1				37712	5585	25875	25966	38173	38173	230				-0.10155303336614452
SQCEFSMGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))EFSMGK_	SQC(1)EFSMGK		SQC(94)EFSMGK		0	1	0		ENST00000487570.1_1_3:63824036-63825384:-|nuORF;THOC7|p.Q105Afs*16|1|0.29|ENSG00000163634|chr3:63838016-63838017|-/T|frameshift_variant;THOC7|p.N115Kfs*6|1|0.12|ENSG00000163634|chr3:63837983-63837984|-/T|frameshift_variant;THOC7|p.M198Ifs*5|1|0.05|ENSG00000163634|chr3:63834152-63834153|CC/-|frameshift_variant;ENSG00000163634|ENST00000295899|THOC7	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2235717773438	2	537.223159	1072.43177	2.102	0.0011292	-1.821	-0.00097826	0.28101	0.00015096	537.2225782933394	26.81	0.38206	26.81	26.715	27.097	0					24	9	4	0	0	0	0.052435	1	9288	9288		94.409	30.202	1	1056200			37713	5585	25875	25966	38174	38174	230				-0.10155303336614452
SQCEFSMGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))EFSMGK_	SQC(1)EFSMGK		SQC(49)EFSMGK		0	1	0		ENST00000487570.1_1_3:63824036-63825384:-|nuORF;THOC7|p.Q105Afs*16|1|0.29|ENSG00000163634|chr3:63838016-63838017|-/T|frameshift_variant;THOC7|p.N115Kfs*6|1|0.12|ENSG00000163634|chr3:63837983-63837984|-/T|frameshift_variant;THOC7|p.M198Ifs*5|1|0.05|ENSG00000163634|chr3:63834152-63834153|CC/-|frameshift_variant;ENSG00000163634|ENST00000295899|THOC7	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2242431640625	2	537.223159	1072.43177	-0.38358	-0.00020607	0.94868	0.00050965	0.56511	0.00030359	537.2236430903743	26.567	0.20543	26.567	26.461	26.667	0					10	7	2	0	0	0	0.31937	1	8369	8369		48.602	12.983	1	111000			37714	5585	25875	25966	38175	38175	230				-0.10155303336614452
SQCEFSMGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))EFSMGK_	SQC(1)EFSMGK		SQC(85)EFSMGK		0	1	0		ENST00000487570.1_1_3:63824036-63825384:-|nuORF;THOC7|p.Q105Afs*16|1|0.29|ENSG00000163634|chr3:63838016-63838017|-/T|frameshift_variant;THOC7|p.N115Kfs*6|1|0.12|ENSG00000163634|chr3:63837983-63837984|-/T|frameshift_variant;THOC7|p.M198Ifs*5|1|0.05|ENSG00000163634|chr3:63834152-63834153|CC/-|frameshift_variant;ENSG00000163634|ENST00000295899|THOC7	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2235717773438	2	537.223159	1072.43177	1.8758	0.0010077	-1.4479	-0.00077782	0.42791	0.00022988	537.2226039314244	26.819	0.3614	26.819	26.71	27.072	0					16	7	4	0	0	0	0.079477	1	9657	9657		84.817	33.625	1	817610			37715	5585	25875	25966	38176	38176	230				-0.10155303336614452
SQCEFSMGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))EFSMGK_	SQC(1)EFSMGK		SQC(130)EFSMGK		0	1	0		ENST00000487570.1_1_3:63824036-63825384:-|nuORF;THOC7|p.Q105Afs*16|1|0.29|ENSG00000163634|chr3:63838016-63838017|-/T|frameshift_variant;THOC7|p.N115Kfs*6|1|0.12|ENSG00000163634|chr3:63837983-63837984|-/T|frameshift_variant;THOC7|p.M198Ifs*5|1|0.05|ENSG00000163634|chr3:63834152-63834153|CC/-|frameshift_variant;ENSG00000163634|ENST00000295899|THOC7	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	ENST00000487570.1_1_3:63824036-63825384:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2234497070312	2	537.223159	1072.43177	1.9725	0.0010597	-1.7734	-0.00095269	0.19911	0.00010697	537.2224516714032	26.792	0.51738	26.792	26.637	27.154	0					23	10	4	0	0	0	0.017741	1	9502	9502		125.71	51.458	1	1122200			37716	5585	25875	25966	38177	38177	230				-0.10155303336614452
SQCGSLIGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))GSLIGK_	SQC(1)GSLIGK		SQC(79)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.2424621582031	2	475.242209	948.469866	-0.0063817	-3.0329E-06	-0.69551	-0.00033054	-0.7019	-0.00033357	475.24191219007054	22.282	0.38445	22.282	22.097	22.481	0					31	11	4	0	0	0	0.099758	1	6254	6254		79.489	17.382	1	2695300			37717	7427	25876	25967	38178	38178	315				-0.006430493596326414
SQCGSLIGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))GSLIGK_	SQC(1)GSLIGK		SQC(99)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2418518066406	2	475.242209	948.469866	0.32081	0.00015246	-1.5379	-0.00073089	-1.2171	-0.00057843	475.24161278762483	22.608	0.63324	22.608	22.474	23.107	0					37	15	6	0	0	0	0.040209	1	7358	7358		99.013	11.317	1	19339000			37718	7427	25876	25967	38179	38179	315				-0.006430493596326414
SQCGSLIGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))GSLIGK_	SQC(1)GSLIGK		SQC(110)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.241943359375	2	475.242209	948.469866	-1.5636	-0.0007431	0.66403	0.00031557	-0.89959	-0.00042752	475.2425647281068	22.294	0.44167	22.294	22.101	22.542	0					35	13	4	0	0	0	0.024312	1	6530	6530		114.86	16.229	1	3784800			37719	7427	25876	25967	38180	38180	315				-0.006430493596326414
SQCGSLIGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))GSLIGK_	SQC(1)GSLIGK		SQC(120)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2419128417969	2	475.242209	948.469866	0.61971	0.00029451	-1.8179	-0.00086394	-1.1982	-0.00056943	475.24150584116745	22.509	0.71121	22.509	22.35	23.061	0					33	14	5	0	0	0	0.021015	1	7614	7614		120.31	21.677	1	21370000			37720	7427	25876	25967	38181	38181	315				-0.006430493596326414
SQCGSLIGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))GSLIGK_	SQC(1)GSLIGK		SQC(89)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2421875	2	475.242209	948.469866	-0.08474	-4.0272E-05	-0.69396	-0.0003298	-0.7787	-0.00037007	475.2419814302096	22.354	0.2863	22.354	22.259	22.545	0					17	6	4	0	0	0	0.067603	1	6634	6634		89.029	23.563	1	891230			37721	7427	25876	25967	38182	38182	315				-0.006430493596326414
SQCGSLIGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))GSLIGK_	SQC(1)GSLIGK		SQC(110)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.241943359375	2	475.242209	948.469866	-2.6743	-0.0012709	1.5115	0.00071832	-1.1628	-0.00055261	475.24308477658474	22.37	0.37225	22.37	22.233	22.605	0					18	8	4	0	0	0	0.024312	1	6637	6637		114.86	32.618	1	1700400			37722	7427	25876	25967	38183	38183	315				-0.006430493596326414
SQCGSLIGK	9	Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))GSLIGK_	SQC(1)GSLIGK		SQC(120)GSLIGK		0	1	0		nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2|p.T202Kfs*26|1|0.32|ENSG00000197111|chr12:53464773-53464773|C/-|frameshift_variant;nc|ENSG00000183570|P57721-2|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-3|PCBP3;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000090097|P57723-2|PCBP4;PCBP4|p.G203Efs*11|1|0.1|ENSG00000090097|chr3:51959397-51959398|-/CTCT|frameshift_variant;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000197111|Q15366|PCBP2	nc|ENSG00000197111|Q15366|PCBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.24176025390625	2	475.242209	948.469866	0.739	0.0003512	-1.7698	-0.0008411	-1.0308	-0.00048989	475.24149140388243	22.481	0.61857	22.481	22.27	22.889	0					30	12	5	0	0	0	0.021015	1	7492	7492		120.31	18.705	1	19343000			37723	7427	25876	25967	38184	38184	315				-0.006430493596326414
SQCVCYPA	8	2 Carbamidomethyl (C)	_SQC(Carbamidomethyl (C))VC(Carbamidomethyl (C))YPA_	SQC(1)VC(1)YPA		SQC(48)VC(48)YPA		0	2	0			REV__ENST00000258382.9_2_2:231084642-231084825:-|nuORF	REV__ENST00000258382.9_2_2:231084642-231084825:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.6991882324219	2	492.69932	983.384087	-0.52268	-0.00025752	-0.41878	-0.00020633	-0.94146	-0.00046386	492.6994789865667	21.089	0.34364	21.089	20.92	21.264	0					27	8	5	0	0	0	0.60719	1	6637	6637		47.916	10.104	1	1030900	+		37724	17997	25877	25968	38185	38185	632;633				-0.10826957536824011
SQDGLGAPHPR	11	Unmodified	_SQDGLGAPHPR_					0	0	0			REV__ENST00000592120.5_2_16:4896808-4897351:+|nuORF	REV__ENST00000592120.5_2_16:4896808-4897351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.7883911132812	2	567.786161	1133.55777	3.4702	0.0019703	0.36517	0.00020734	3.8353	0.0021776	567.7863285332838	11.885	0.33836	11.885	11.797	12.135	0					18	9	3	0	0	0	0.68382	1	2403	2403		29.17	3.596	1	1829800	+		37725	20535	25878	25969	38186	38186					-0.0036671244467925135
SQDTEENSLN	10	Unmodified	_SQDTEENSLN_					0	0	0			REV__PALB2|p.L451V|1|0.11|ENSG00000083093|chr16:23635195-23635195|A/C|missense_variant	REV__PALB2|p.L451V|1|0.11|ENSG00000083093|chr16:23635195-23635195|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2430419921875	2	568.738739	1135.46293	3.4573	0.0019663	1.7793	0.0010119	5.2366	0.0029783	568.7397690277527	47.526	0.15037	47.526	47.446	47.596	0					13	8	2	0	0	0	0.35046	1	18962	18962		61.691	5.2575	1	92988	+		37726	13325	25879	25970	38187	38187					-0.09938735497166817
SQEAKPYK	8	Unmodified	_SQEAKPYK_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.749755859375	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.515	1	27.515	27.015	28.015	0								0	0	0	1.7419	1	8489	8489		38.806	0	1				37727	5872	25880	25971	38188	38188					0.010131945178045498
SQEDAKLLIK	10	Unmodified	_SQEDAKLLIK_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2;SLC9C2|p.K843Nfs*2|1|0.57|ENSG00000162753|chr1:173524080-173524080|T/-|frameshift_variant	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.832275390625	2	572.832246	1143.64994	2.0242	0.0011595	-1.5745	-0.00090195	0.4497	0.0002576	572.8311466218815	32.683	0.24733	32.683	32.555	32.802	0					14	6	3	0	0	0	0.20981	1	12451	12451		78.264	9.4176	1	296540			37728	5496	25881	25972	38189	38189					0.08385952848993838
SQEEQIARK	9	Unmodified	_SQEEQIARK_					0	0	0		PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;ENSG00000118898|ENST00000345988|PPL	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7886352539062	2	544.78837	1087.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.049	1	16.049	15.549	16.549	0								0	0	0	0.10826	1	4511	4511		69.628	0	1				37729	3086	25882	25973	38190	38190					0.02190751978218941
SQFEGSALGK	10	Unmodified	_SQFEGSALGK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2586059570312	2	512.258914	1022.50327	1.051	0.0005384	-1.3013	-0.0006666	-0.25027	-0.0001282	512.2581758724117	26.047	0.18047	26.047	25.957	26.138	0					10	4	3	0	0	0	0.28855	1	8948	8948		68.626	23.604	1	389600			37730	3063	25883	25974	38191	38191					-0.0070772431608929764
SQFEGSALGK	10	Unmodified	_SQFEGSALGK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2586059570312	2	512.258914	1022.50327	0.052114	2.6696E-05	0.17278	8.8507E-05	0.22489	0.0001152	512.2586591843227	26.009	0.17023	26.009	25.898	26.068	0					5	3	2	0	0	0	0.1725	1	9126	9126		82.831	2.3759	1	140880			37731	3063	25883	25974	38192	38192					-0.0070772431608929764
SQFEPESLDET	11	Unmodified	_SQFEPESLDET_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	641.2760620117188	2	641.277697	1280.54084	-0.77931	-0.00049975	-0.51603	-0.00033092	-1.2953	-0.00083067	641.2774656431812	19.089	0.22597	19.089	19.026	19.252	0					19	7	4	0	0	0	0.38515	1	5101	5101		53.089	1.8963	1	924900	+		37732	17387	25884	25975	38193	38193					-0.08820722631799072
SQFEPESLDET	11	Unmodified	_SQFEPESLDET_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	641.2764282226562	2	641.277697	1280.54084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.18	1	19.18	18.68	19.68	0								0	0	0	0.18035	1	5157	5157		65.465	9.0316	1		+		37733	17387	25884	25975	38194	38194					-0.08820722631799072
SQFEPESLDET	11	Unmodified	_SQFEPESLDET_					0	0	0			REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	REV__SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	641.2764892578125	2	641.277697	1280.54084	-2.2858	-0.0014658	0.14404	9.2373E-05	-2.1417	-0.0013734	641.2778062757368	19.189	0.22698	19.189	19.048	19.274	0					13	5	3	0	0	0	0.22894	1	5166	5166		70.816	19.624	1	733210	+		37734	17387	25884	25975	38195	38195					-0.08820722631799072
SQFLAPKAMKK	11	Unmodified	_SQFLAPKAMKK_					0	0	0		ENST00000535075.1_1_11:72465944-72466832:-|nuORF;ENST00000543089.1_1_11:72465944-72468974:-|nuORF;ENSG00000214530|ENST00000334805|STARD10	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	624.8605346679688	2	624.860283	1247.70601	0.82289	0.00051419	-0.83301	-0.00052052	-0.010122	-6.3248E-06	624.8599760404036	21.863	0.14842	21.863	21.766	21.915	0					12	3	4	0	0	0	0.0028782	1	7004	7004		133.99	48.833	1	1406600			37735	10477	25885	25976	38196	38196					0.09206882484795642
SQFLAPKAMKK	11	Unmodified	_SQFLAPKAMKK_					0	0	0		ENST00000535075.1_1_11:72465944-72466832:-|nuORF;ENST00000543089.1_1_11:72465944-72468974:-|nuORF;ENSG00000214530|ENST00000334805|STARD10	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.9097900390625	3	416.909281	1247.70601	0.95891	0.00039978	-1.4245	-0.00059388	-0.46557	-0.0001941	416.90882154135386	21.767	0.5623	21.767	21.608	22.17	0					29	11	5	0	0	0	0.21827	1	7252	7252		72.096	17.012	1	4180600			37736	10477	25885	25976	38197	38197					0.09206882484795642
SQFLAPKAMKK	11	Unmodified	_SQFLAPKAMKK_					0	0	0		ENST00000535075.1_1_11:72465944-72466832:-|nuORF;ENST00000543089.1_1_11:72465944-72468974:-|nuORF;ENSG00000214530|ENST00000334805|STARD10	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	624.8603515625	2	624.860283	1247.70601	0.036898	2.3056E-05	-0.28668	-0.00017913	-0.24978	-0.00015608	624.8601529161502	21.751	0.16674	21.751	21.642	21.809	0					10	3	4	0	0	0	0.00056369	1	7268	7268		133.99	38.178	1	994130			37737	10477	25885	25976	38198	38198					0.09206882484795642
SQFLAPKAMKK	11	Unmodified	_SQFLAPKAMKK_					0	0	0		ENST00000535075.1_1_11:72465944-72466832:-|nuORF;ENST00000543089.1_1_11:72465944-72468974:-|nuORF;ENSG00000214530|ENST00000334805|STARD10	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.9091796875	3	416.909281	1247.70601	-2.4032	-0.0010019	1.9538	0.00081454	-0.44948	-0.00018739	416.910147460494	21.64	0.28971	21.64	21.516	21.806	0					13	7	3	0	0	0	0.36165	1	6298	6298		55.721	8.766	1	212560			37738	10477	25885	25976	38199	38199					0.09206882484795642
SQFLAPKAMKK	11	Unmodified	_SQFLAPKAMKK_					0	0	0		ENST00000535075.1_1_11:72465944-72466832:-|nuORF;ENST00000543089.1_1_11:72465944-72468974:-|nuORF;ENSG00000214530|ENST00000334805|STARD10	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	624.8619384765625	2	624.860283	1247.70601	-2.1178	-0.0013234	3.6164	0.0022597	1.4985	0.00093637	624.862863277225	21.625	0.11259	21.625	21.559	21.671	0					5	3	2	0	0	0	0.51003	1	6308	6308		48.602	13.423	1	62084			37739	10477	25885	25976	38200	38200					0.09206882484795642
SQFLAPKAMKK	11	Unmodified	_SQFLAPKAMKK_					0	0	0		ENST00000535075.1_1_11:72465944-72466832:-|nuORF;ENST00000543089.1_1_11:72465944-72468974:-|nuORF;ENSG00000214530|ENST00000334805|STARD10	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	ENST00000535075.1_1_11:72465944-72466832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.90911865234375	3	416.909281	1247.70601	1.055	0.00043984	-1.8127	-0.00075573	-0.75772	-0.0003159	416.9086972127447	21.781	0.22014	21.781	21.62	21.84	0					13	4	4	0	0	0	0.34891	1	7131	7131		57.149	12.509	1	2364300			37740	10477	25885	25976	38201	38201					0.09206882484795642
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.31591796875	2	547.813856	1093.61316	1.6524	0.00090521	-0.56258	-0.00030819	1.0898	0.00059702	547.8135903130556	24.088	0.21297	24.088	23.986	24.199	0					14	6	3	0	0	0	0.049815	1	7047	7047		107.45	38.609	1	326120			37741	1543	25886	25977	38202	38202					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.8142700195312	2	547.813856	1093.61316	1.8506	0.0010138	-0.91974	-0.00050385	0.93082	0.00050992	547.8132346971347	24.364	0.28015	24.364	24.265	24.545	0					21	6	5	0	0	0	0.004865	1	8201	8201		167.93	4.7823	1	3944500			37742	1543	25886	25977	38203	38203					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	365.5449523925781	3	365.544996	1093.61316	-0.9759	-0.00035673	1.1143	0.00040732	0.13838	5.0584E-05	365.5453147762355	24.122	0.17082	24.122	24.018	24.189	0					11	5	3	0	0	0	0.28724	1	7332	7332		68.786	20.826	1	707810			37743	1543	25886	25977	38204	38204					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.8142700195312	2	547.813856	1093.61316	1.9345	0.0010597	-0.87677	-0.00048031	1.0577	0.00057943	547.8133293231742	24.147	0.15949	24.147	24.047	24.206	0					6	3	2	0	0	0	0.06561	1	7493	7493		102.06	21.607	1	374160			37744	1543	25886	25977	38205	38205					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.8143310546875	2	547.813856	1093.61316	1.1497	0.00062982	0.29378	0.00016094	1.4435	0.00079076	547.8140337123922	24.177	0.23401	24.177	24.078	24.312	0					9	5	3	0	0	0	0.05301	1	7488	7488		106.88	31.837	1	202020			37745	1543	25886	25977	38206	38206					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.8165893554688	2	547.813856	1093.61316	0.52343	0.00028674	0.93318	0.00051121	1.4566	0.00079795	547.8142547382215	24.287	0.31697	24.287	24.179	24.496	0					18	6	4	0	0	0	0.0095014	1	8347	8347		144.77	18.526	1	3120500			37746	1543	25886	25977	38207	38207					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.8145141601562	2	547.813856	1093.61316	1.8782	0.0010289	-0.9137	-0.00050054	0.96452	0.00052838	547.8133251984077	24.289	0.26706	24.289	24.213	24.48	0					12	5	3	0	0	0	0.0075484	1	8362	8362		156.16	26.739	1	1822900			37747	1543	25886	25977	38208	38208					0.07009701023071102
SQFSLPVQK	9	Unmodified	_SQFSLPVQK_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2871704101562	2	517.287474	1032.5604	-1.4647	-0.00075768	1.467	0.00075885	0.0022544	1.1662E-06	517.288018835411	33.842	0.22753	33.842	33.733	33.961	0					9	6	2	0	0	0	0.24334	1	11927	11927		56.434	6.8977	1	155440			37748	7218	25887	25978	38209	38209					0.04541742960282136
SQGDSNPA	8	Unmodified	_SQGDSNPA_					0	0	0		nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2;PAFAH1B2|p.S64Pfs*6|1|0.28|ENSG00000168092|chr11:117161158-117161158|T/-|frameshift_variant;nc|ENSG00000168092|P68402-3|PAFAH1B2	nc|ENSG00000168092|P68402-2|PAFAH1B2	nc|ENSG00000168092|P68402-2|PAFAH1B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.1632080078125	2	388.164482	774.314411	0.44087	0.00017113	-3.9578	-0.0015363	-3.5169	-0.0013651	388.162588411495	33.307	0.18446	33.307	33.203	33.388	0					6	4	2	0	0	0	0.69548	1	12763	12763		34.173	3.8548	1	53627			37749	6062	25888	25979	38210	38210					-0.08177376889557308
SQGGELSRC	9	Unmodified	_SQGGELSRC_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7139892578125	2	468.713816	935.413079	0.56452	0.0002646	-0.65533	-0.00030716	-0.090806	-4.2562E-05	468.71354474384884	29.151	3.8831	29.151	28.992	32.875	0					189	78	5	0	0	0	0.44593	1	11088	11088		37.812	0	1	35072000			37750	4828	25889	25980	38211	38211					-0.05721096916170154
SQGGRGGT	8	Unmodified	_SQGGRGGT_					0	0	0		ENST00000359692.10_3_19:10941786-10942158:+|nuORF	ENST00000359692.10_3_19:10941786-10942158:+|nuORF	ENST00000359692.10_3_19:10941786-10942158:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.1755676269531	2	360.175184	718.335815	1.2366	0.00044539	0.10644	3.8338E-05	1.343	0.00048373	360.17512330147815	45.508	0.1562	45.508	45.42	45.576	0					8	5	2	0	0	0	0.7976	1	18239	18239		20.947	0	1	77342			37751	8852	25890	25981	38212	38212					-0.03461947070172755
SQGLDRKSK	9	Unmodified	_SQGLDRKSK_					0	0	0			REV__nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;REV__ENSG00000165966|ENST00000402685|PDZRN4	REV__nc|ENSG00000165966|Q6ZMN7-4|PDZRN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7885437011719	2	509.78563	1017.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.768	1	33.768	33.268	34.268	0								0	0	0	0.33029	1	11886	11886		29.17	0.020503	1		+		37752	21102;16078	25891	25982	38213	38213					0.048630731864250265
SQGNILENK	9	Unmodified	_SQGNILENK_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.76422119140625	2	501.764363	1001.51417	-0.095568	-4.7952E-05	0.68297	0.00034269	0.5874	0.00029474	501.76488654397326	23.562	0.49142	23.562	23.34	23.832	0					13	11	2	0	0	0	0.19952	1	7828	7828		61.691	3.88	1	211530			37753	7189	25892	25983	38214	38214					0.013476780581981984
SQGPISKPK	9	Unmodified	_SQGPISKPK_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant;ENST00000463639.1_1_6:32945329-32946166:+|nuORF	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2741394042969	2	471.274367	940.53418	-0.41658	-0.00019632	-0.17774	-8.3764E-05	-0.59432	-0.00028009	471.27424831231286	15.408	0.24809	15.408	15.3	15.548	0					26	10	4	0	0	0	0.36135	1	3329	3329		45.022	4.244	1	1767400			37754	7686	25893	25984	38215	38215					0.0615347378881097
SQGPISKPK	9	Unmodified	_SQGPISKPK_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant;ENST00000463639.1_1_6:32945329-32946166:+|nuORF	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.27423095703125	2	471.274367	940.53418	-0.60574	-0.00028547	-0.060007	-2.828E-05	-0.66574	-0.00031375	471.2743117367557	15.693	0.50605	15.693	15.601	16.107	0					22	12	2	0	0	0	0.046074	1	4092	4092		96.665	29.703	1	9486700			37755	7686	25893	25984	38216	38216					0.0615347378881097
SQGPISKPK	9	Unmodified	_SQGPISKPK_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant;ENST00000463639.1_1_6:32945329-32946166:+|nuORF	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2745056152344	2	471.274367	940.53418	-0.81636	-0.00038473	0.25982	0.00012245	-0.55654	-0.00026228	471.2745820255953	15.449	0.15851	15.449	15.364	15.523	0					9	5	2	0	0	0	0.53064	1	3504	3504		29.17	0	1	237980			37756	7686	25893	25984	38217	38217					0.0615347378881097
SQGPISKPK	9	Unmodified	_SQGPISKPK_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant;ENST00000463639.1_1_6:32945329-32946166:+|nuORF	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.274169921875	2	471.274367	940.53418	-0.81573	-0.00038443	0.32059	0.00015109	-0.49514	-0.00023335	471.2745981414358	15.66	0.26805	15.66	15.55	15.818	0					13	5	4	0	0	0	0.019258	1	4335	4335		123.21	27.018	1	1057600			37757	7686	25893	25984	38218	38218					0.0615347378881097
SQGSTNYGK	9	Unmodified	_SQGSTNYGK_					0	0	0		nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729|HNRNPAB	nc|ENSG00000197451|Q99729|HNRNPAB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2193298339844	2	471.219788	940.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.669	1	13.669	13.169	14.169	0								0	0	0	0.16453	1	3379	3379		56.434	10.462	1				37758	7462	25894	25985	38219	38219					-0.04757156901325743
SQGTPISLK	9	Unmodified	_SQGTPISLK_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.76580810546875	2	465.766374	929.518196	-0.13649	-6.3574E-05	-0.55448	-0.00025826	-0.69097	-0.00032183	465.7660072235293	26.884	0.3121	26.884	26.727	27.039	0					12	6	3	0	0	0	0.032383	1	9663	9663		106.68	21.522	1	574270			37759	6015	25895	25986	38220	38220					0.05061767551922003
SQGTPISLK	9	Unmodified	_SQGTPISLK_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.76666259765625	2	465.766374	929.518196	-0.49491	-0.00023051	0.5779	0.00026916	0.082985	3.8651E-05	465.7666499605295	26.813	0.31414	26.813	26.705	27.019	0					11	6	3	0	0	0	0.021015	1	9529	9529		120.31	24.116	1	807420			37760	6015	25895	25986	38221	38221					0.05061767551922003
SQHEVFVEK	9	Unmodified	_SQHEVFVEK_					0	0	0		nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575447.1_1_16:24979927-25026645:-|nuORF;nc|ENSG00000140750|Q68EM7-4|ARHGAP17;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant	nc|ENSG00000140750|Q68EM7-2|ARHGAP17	nc|ENSG00000140750|Q68EM7-2|ARHGAP17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7805786132812	2	551.780013	1101.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.816	1	20.816	20.316	21.316	0								0	0	0	0.11185	1	6803	6803		70.399	18.871	1				37761	4407	25896	25987	38222	38222					-0.0012374890770843194
SQICIQVSK	9	Carbamidomethyl (C)	_SQIC(Carbamidomethyl (C))IQVSK_	SQIC(1)IQVSK		SQIC(54)IQVSK		0	1	0		ENSG00000110367|ENST00000534980|DDX6;ENST00000441966.1_1_6:29297957-29298365:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.78515625	2	531.784241	1061.55393	1.0477	0.00055715	0.1877	9.9815E-05	1.2354	0.00065697	531.7844898584696	28.455	0.10553	28.455	28.368	28.473	0					5	3	2	0	0	0	0.26699	1	8894	8894		53.597	11.201	1	50133			37762	2622	25897	25988	38223	38223	105				0.025614817372343168
SQIIKEFK	8	Unmodified	_SQIIKEFK_					0	0	0		tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7920837402344	2	496.792392	991.570232	-0.32873	-0.00016331	0.094527	4.6961E-05	-0.2342	-0.00011635	496.7924357665266	40.475	0.35362	40.475	40.348	40.702	0					27	14	3	0	0	0	0.2678	1	15420	15420		93.195	1.9302	1	584220			37763	22768	25898	25989	38224	38224					0.0741093096565919
SQKIKEESL	9	Unmodified	_SQKIKEESL_					0	0	0			REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.2959594726562	2	531.295496	1060.57644	-1.2356	-0.00065648	3.3512	0.0017805	2.1156	0.001124	531.2969715453647	33.739	0.14582	33.739	33.702	33.848	0					8	4	2	0	0	0	0.43488	1	11878	11878		24.519	0	1	76709	+		37764	20128	25899	25990	38225	38225					0.0485740440653899
SQKLEARCRG	10	Carbamidomethyl (C)	_SQKLEARC(Carbamidomethyl (C))RG_	SQKLEARC(1)RG		SQKLEARC(50)RG		0	1	0		ENST00000399640.3_1_8:134471412-134471994:-|nuORF	ENST00000399640.3_1_8:134471412-134471994:-|nuORF	ENST00000399640.3_1_8:134471412-134471994:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.2123718261719	3	402.212023	1203.61424	-0.12377	-4.9782E-05	0.44995	0.00018097	0.32617	0.00013119	402.2122172529213	17.601	0.61734	17.601	17.501	18.118	0					34	14	4	0	0	0	0.46128	1	4400	4400		49.536	10.782	1	1708600			37765	9240	25900	25991	38226	38226	383				0.020575921203317193
SQKMFVNTK	9	Unmodified	_SQKMFVNTK_					0	0	0		nc|ENSG00000164654|Q9NXC5-2|MIOS;MIOS|p.L817Ifs*5|1|0.38|ENSG00000164654|chr7:7605982-7605983|-/A|frameshift_variant;ENSG00000164654|ENST00000340080|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7872924804688	2	541.786784	1081.55902	0.31352	0.00016986	0.45116	0.00024443	0.76467	0.00041429	541.7871046276179	20.504	0.1656	20.504	20.396	20.562	0					5	3	2	0	0	0	0.067603	1	6668	6668		89.029	6.2783	1	291660			37766	5715	25901	25992	38227	38227					0.021497855998632076
SQLDQQAAEH	10	Unmodified	_SQLDQQAAEH_					0	0	0			REV__KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	REV__KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.7600708007812	2	563.759809	1125.50507	1.7488	0.00098588	-1.0242	-0.00057743	0.72451	0.00040845	563.7592311389012	16.089	0.32012	16.089	15.98	16.3	0					18	6	4	0	0	0	0.59277	1	4393	4393		35.152	0.97948	1	1957400	+		37767	14475	25902	25993	38228	38228					-0.052667152981712206
SQLEQENNLLK	11	Unmodified	_SQLEQENNLLK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	658.3465576171875	2	658.346249	1314.67794	0.24376	0.00016048	-0.35013	-0.00023051	-0.10638	-7.0033E-05	658.8474634475078	31.951	0.13295	31.951	31.888	32.021	0					8	5	2	0	0	0	0.18934	1	10291	10291		75.566	28.338	1	111960			37768	2190	25903	25994	38229	38229					0.03319231038426551
SQLEQENNLLK	11	Unmodified	_SQLEQENNLLK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	658.3461303710938	2	658.346249	1314.67794	-0.16616	-0.00010939	0.25948	0.00017083	0.093324	6.1439E-05	658.3464183100127	32.221	0.21479	32.221	32.127	32.342	0					15	5	4	0	0	0	3.4317E-06	1	11799	11799		187.16	80.275	1	523230			37769	2190	25903	25994	38230	38230					0.03319231038426551
SQLEQENNLLK	11	Unmodified	_SQLEQENNLLK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	658.345947265625	2	658.346249	1314.67794	1.3743	0.00090474	-0.99668	-0.00065616	0.37758	0.00024858	658.3453764334213	31.985	0.12267	31.985	31.924	32.047	0					6	4	2	0	0	0	0.29048	1	10647	10647		63.694	8.9717	1	73288			37770	2190	25903	25994	38231	38231					0.03319231038426551
SQLEQENNLLK	11	Unmodified	_SQLEQENNLLK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	658.3467407226562	2	658.346249	1314.67794	-0.98002	-0.00064519	0.62197	0.00040947	-0.35805	-0.00023572	658.3469452877367	32.191	0.21171	32.191	32.109	32.321	0					10	4	3	0	0	0	0.018969	1	12211	12211		120.63	29.365	1	255390			37771	2190	25903	25994	38232	38232					0.03319231038426551
SQLFGQSLLDP	11	Unmodified	_SQLFGQSLLDP_					0	0	0			REV__ENSG00000178171|ENST00000321420|AMER3	REV__ENSG00000178171|ENST00000321420|AMER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.2124938964844	3	402.211794	1203.61355	0.60648	0.00024393	0.16528	6.6479E-05	0.77177	0.00031041	402.2118725116104	17.498	0.62399	17.498	17.386	18.01	0					52	18	5	0	0	0	0.44025	1	4167	4167		48.602	3.5793	1	2027400	+		37772	16723	25904	25995	38233	38233					0.019890759522922963
SQLFGQSLLDP	11	Unmodified	_SQLFGQSLLDP_					0	0	0			REV__ENSG00000178171|ENST00000321420|AMER3	REV__ENSG00000178171|ENST00000321420|AMER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.212158203125	3	402.211794	1203.61355	0.94846	0.00038148	-0.10343	-4.1599E-05	0.84503	0.00033988	402.21187053330004	17.78	1.1194	17.78	17.696	18.816	0					82	26	4	0	0	0	0.3077	1	5067	5067		61.765	6.6806	1	27551000	+		37773	16723	25904	25995	38234	38234					0.019890759522922963
SQLGIFISK	9	Unmodified	_SQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7922668457031	2	496.792392	991.570232	0.12536	6.228E-05	0.21292	0.00010578	0.33828	0.00016806	496.79252062247957	40.167	0.21457	40.167	40.053	40.268	0					28	12	3	0	0	0	0.054723	1	12989	12989		93.598	13.143	1	203540			37774	3174	25905	25996	38235	38235					0.0741093096565919
SQLGIFISK	9	Unmodified	_SQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7925109863281	2	496.792392	991.570232	-0.059392	-2.9505E-05	-0.28181	-0.00014	-0.3412	-0.00016951	496.79233595713555	40.144	0.16397	40.144	40.048	40.212	0					14	9	2	0	0	0	0.21263	1	12986	12986		60.118	4.6141	1	82466			37775	3174	25905	25996	38236	38236					0.0741093096565919
SQLHGQITR	9	Unmodified	_SQLHGQITR_					0	0	0			REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2855834960938	2	520.285797	1038.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.095	1	13.095	12.595	13.595	0								0	0	0	0.15687	1	2610	2610		58.23	0	1		+		37776	15912	25906	25997	38237	38237					0.03930492906260952
SQLLRESY	8	Unmodified	_SQLLRESY_					0	0	0		MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant;ENSG00000138347|ENST00000358913|MYPN;MYPN|p.K575Nfs*9|1|0.23|ENSG00000138347|chr10:68166410-68166410|C/-|frameshift_variant	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.26141357421875	2	498.261456	994.50836	-1.101	-0.00054859	0.84524	0.00042115	-0.25578	-0.00012744	498.2617589076717	22.361	0.21993	22.361	22.291	22.511	0					19	6	4	0	0	0	0.53424	1	6558	6558		56.721	5.3856	1	901610			37777	4247	25907	25998	38238	38238					0.010885795465128467
SQMEQFPVK	9	Unmodified	_SQMEQFPVK_					0	0	0		TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000461189.1_1_2:230659893-230661399:-|nuORF	TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2713012695312	2	547.270967	1092.52738	1.854	0.0010147	-1.1718	-0.0006413	0.68223	0.00037336	547.2708661978706	30.725	0.23776	30.725	30.61	30.848	0					12	5	3	0	0	0	0.46194	1	11133	11133		36.447	3.6343	1	157590			37778	5062	25908	25999	38239	38239					-0.015182071540948527
SQMKIVHKK	9	Unmodified	_SQMKIVHKK_					0	0	0		ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.826416015625	2	549.826243	1097.63793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.837	1	13.837	13.337	14.337	0								0	0	0	0.2595	1	2764	2764		35.152	6.8977	1				37779	7313	25909	26000	38240	38240					0.09302057624813642
SQMKIVHKK	9	Unmodified	_SQMKIVHKK_					0	0	0		ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.8866882324219	3	366.886588	1097.63793	0.75569	0.00027725	-0.59339	-0.00021771	0.1623	5.9547E-05	366.88636561085264	14.107	0.094261	14.107	14.061	14.156	0					4	2	2	0	0	0	0.36135	1	3378	3378		45.022	15.852	1	192040			37780	7313	25909	26000	38241	38241					0.09302057624813642
SQMKIVHKK	9	Unmodified	_SQMKIVHKK_					0	0	0		ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.8864440917969	3	366.886588	1097.63793	0.2719	9.9757E-05	-0.59554	-0.0002185	-0.32364	-0.00011874	366.88632661537633	14.05	0.11586	14.05	13.991	14.107	0					4	2	2	0	0	0	0.037924	1	3570	3570		101.25	41.134	1	325470			37781	7313	25909	26000	38242	38242					0.09302057624813642
SQMKIVHKK	9	Unmodified	_SQMKIVHKK_					0	0	0		ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	ENSG00000189266|ENST00000334351|PNRC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.88653564453125	3	366.886588	1097.63793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.131	1	14.131	13.631	14.631	0								0	0	0	0.11963	1	3446	3446		66.962	26.904	1				37782	7313	25909	26000	38243	38243					0.09302057624813642
SQMLAMNIEK	10	Unmodified	_SQMLAMNIEK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.2889404296875	2	582.791209	1163.56787	-0.0020173	-1.1757E-06	-2.9542	-0.0017217	-2.9562	-0.0017228	583.289913318428	35.637	0.1925	35.637	35.558	35.751	0					8	5	3	0	0	0	0.44971	1	13402	13402		50.791	9.3646	1	131890			37783	2284	25910	26001	38244	38244					-0.007376088259661628
SQMSRMYTI	9	Unmodified	_SQMSRMYTI_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7645874023438	2	558.762452	1115.51035	3.4694	0.0019386	0.1582	8.8399E-05	3.6276	0.002027	558.7625103667269	38.243	0.29223	38.243	38.143	38.435	0					18	6	4	0	0	0	0.0792	1	15029	15029		84.916	10.941	1	1272000			37784	4492	25911	26002	38245	38245					-0.04278451031541408
SQMWFREV	8	Unmodified	_SQMWFREV_					0	0	0			REV__ENST00000553335.5_1_14:57076000-57086109:+|nuORF	REV__ENST00000553335.5_1_14:57076000-57086109:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.759521484375	2	541.758027	1081.5015	1.8912	0.0010246	0.91297	0.00049461	2.8042	0.0015192	541.7585549267047	24.316	0.28263	24.316	24.22	24.502	0					12	6	2	0	0	0	0.30437	1	8181	8181		82.305	82.305	1	1724100	+		37785	13172	25912	26003	38246	38246					-0.03599056605685291
SQMWFREV	8	Unmodified	_SQMWFREV_					0	0	0			REV__ENST00000553335.5_1_14:57076000-57086109:+|nuORF	REV__ENST00000553335.5_1_14:57076000-57086109:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7596435546875	2	541.758027	1081.5015	2.0516	0.0011115	0.95343	0.00051653	3.005	0.001628	541.7585231252128	24.27	0.41658	24.27	24.164	24.58	0					17	8	4	0	0	0	0.32815	1	8361	8361		79.451	8.1553	1	1974400	+		37786	13172	25912	26003	38247	38247					-0.03599056605685291
SQNDGSFISK	10	Unmodified	_SQNDGSFISK_					0	0	0		ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7598266601562	2	541.759278	1081.504	0.15022	8.1384E-05	0.75439	0.0004087	0.90461	0.00049008	541.7596744935412	24.047	0.22939	24.047	23.96	24.189	0					19	7	3	0	0	0	0.42408	1	7300	7300		53.597	2.0691	1	397570			37787	2623	25913	26004	38248	38248					-0.033489296670495605
SQNDGSFISK	10	Unmodified	_SQNDGSFISK_					0	0	0		ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7595825195312	2	541.759278	1081.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.152	1	24.152	23.652	24.652	0								0	0	0	0.033129	1	7486	7486		95.483	36.701	1				37788	2623	25913	26004	38249	38249					-0.033489296670495605
SQNGEFMTHK	10	Unmodified	_SQNGEFMTHK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.7666015625	2	589.76658	1177.51861	0.18934	0.00011167	-0.12521	-7.3843E-05	0.06413	3.7822E-05	589.76631304761	19.516	0.13823	19.516	19.43	19.569	0					5	3	2	0	0	0	0.52848	1	5915	5915		42.243	0.81596	1	196210			37789	3289	25914	26005	38250	38250					-0.06305180790559461
SQNGENFCK	9	Carbamidomethyl (C)	_SQNGENFC(Carbamidomethyl (C))K_	SQNGENFC(1)K		SQNGENFC(67)K		0	1	0		NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant;NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN;NOSTRIN|p.N191Tfs*9|1|0.33|ENSG00000163072|chr2:168843053-168843053|A/-|frameshift_variant;NOSTRIN|p.N191Kfs*36|1|0.15|ENSG00000163072|chr2:168843052-168843053|-/A|frameshift_variant	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2285766601562	2	542.22983	1082.44511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.337	1	18.337	17.837	18.837	0								0	0	0	0.11736	1	4546	4546		67.494	14.557	1				37790	5525	25915	26006	38251	38251	228				-0.09281729233020997
SQNGENFCK	9	Unmodified	_SQNGENFCK_					0	0	0		NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant;NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN;NOSTRIN|p.N191Tfs*9|1|0.33|ENSG00000163072|chr2:168843053-168843053|A/-|frameshift_variant;NOSTRIN|p.N191Kfs*36|1|0.15|ENSG00000163072|chr2:168843052-168843053|-/A|frameshift_variant	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.718994140625	2	513.719098	1025.42364	1.1195	0.00057509	-1.0315	-0.0005299	0.087953	4.5183E-05	513.7186031583524	20.485	0.23827	20.485	20.387	20.625	0					12	5	3	0	0	0	0.095583	1	6377	6377		80.455	22.643	1	263890			37791	5525	25915	26007	38252	38252					-0.0880511426173598
SQNLSISFQ	9	Unmodified	_SQNLSISFQ_					0	0	0		ENST00000361740.8_1_22:43014893-43015193:-|nuORF	ENST00000361740.8_1_22:43014893-43015193:-|nuORF	ENST00000361740.8_1_22:43014893-43015193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.259033203125	2	512.258914	1022.50327	0.50616	0.00025929	0.35364	0.00018115	0.8598	0.00044044	512.2591305725781	27.135	0.16361	27.135	27.023	27.186	0					7	3	3	0	0	0	0.19605	1	9808	9808		62.107	5.3864	1	90929			37792	8878	25916	26008	38253	38253					-0.007077243161006663
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.86846923828125	3	392.868473	1175.58359	0.57207	0.00022475	-0.27219	-0.00010693	0.29988	0.00011782	392.8683026805601	16.842	0.33337	16.842	16.75	17.084	0					39	13	4	0	0	0	0.19605	1	3893	3893		62.107	23.354	1	470360			37793	3796	25917	26009	38254	38254					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.7992553710938	2	588.799072	1175.58359	0.16691	9.8275E-05	0.40849	0.00024052	0.57539	0.00033879	588.7992140064479	17.142	0.76849	17.142	17.007	17.776	0					56	19	6	0	0	0	0.073657	1	4770	4770		70.816	7.2824	1	4364800			37794	3796	25917	26009	38255	38255					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.8683776855469	3	392.868473	1175.58359	0.12478	4.9022E-05	-0.45306	-0.00017799	-0.32828	-0.00012897	392.8683042442518	17.123	0.45719	17.123	16.964	17.421	0					27	9	4	0	0	0	0.048471	1	5015	5015		95.815	33.708	1	841970			37795	3796	25917	26009	38256	38256					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.86834716796875	3	392.868473	1175.58359	0.42656	0.00016758	-0.47038	-0.0001848	-0.043821	-1.7216E-05	392.8682147700384	17.127	0.45323	17.127	16.996	17.449	0					22	9	5	0	0	0	0.10915	1	5013	5013		77.318	25.15	1	934100			37796	3796	25917	26009	38257	38257					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7996215820312	2	588.799072	1175.58359	-0.15928	-9.3784E-05	0.5847	0.00034427	0.42542	0.00025049	588.7994313599673	17.089	0.32128	17.089	16.98	17.301	0					10	6	2	0	0	0	0.076532	1	5027	5027		79.713	4.6693	1	308850			37797	3796	25917	26009	38258	38258					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.8685302734375	3	392.868473	1175.58359	0.21628	8.497E-05	0.25384	9.9726E-05	0.47012	0.0001847	392.86852128706226	16.913	0.36591	16.913	16.817	17.183	0					21	10	3	0	0	0	0.21263	1	4096	4096		60.118	60.118	1	352560			37798	3796	25917	26009	38259	38259					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.8683166503906	3	392.868473	1175.58359	-0.66795	-0.00026242	0.31034	0.00012192	-0.35761	-0.00014049	392.86859324448875	17.098	1.9739	17.098	16.94	18.914	0					81	40	5	0	0	0	0.026538	1	4855	4855		112.41	52.293	1	8210900			37799	3796	25917	26009	38260	38260					0.0028218179761552165
SQNRPAAARTF	11	Unmodified	_SQNRPAAARTF_					0	0	0		OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000105953|Q02218-3|OGDH;OGDH|p.L150Wfs*131|1|0.24|ENSG00000105953|chr7:44647686-44647686|C/-|frameshift_variant	OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.8843078613281	3	406.882782	1217.62652	0.047888	1.9485E-05	3.2939	0.0013403	3.3418	0.0013597	406.88429164082845	17.479	0.2632	17.479	17.405	17.668	0					6	5	2	0	0	0	0.49446	1	5202	5202		44.639	7.1313	1	76148			37800	2410	25918	26010	38261	38261					0.026409518550281064
SQNTDMVQK	9	Unmodified	_SQNTDMVQK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7479858398438	2	525.747856	1049.48116	1.3681	0.0007193	-1.4003	-0.00073619	-0.032131	-1.6893E-05	525.7475001834678	17.594	0.17863	17.594	17.495	17.674	0					15	5	4	0	0	0	0.037712	1	4216	4216		101.46	24.142	1	392550			37801	2791	25919	26011	38262	38262					-0.041602720561513706
SQNTDMVQK	9	Unmodified	_SQNTDMVQK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.748046875	2	525.747856	1049.48116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.876	1	17.876	17.376	18.376	0								0	0	0	0.014275	1	5124	5124		164.46	84	1				37802	2791	25919	26011	38263	38263					-0.041602720561513706
SQNTDMVQK	9	Unmodified	_SQNTDMVQK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7490234375	2	525.747856	1049.48116	0.53274	0.00028009	0.020083	1.0559E-05	0.55282	0.00029065	525.7480535925589	17.601	0.17394	17.601	17.528	17.701	0					14	5	3	0	0	0	0.0015666	2	4436	4420;4436		177.3	76.052	1	715360			37803	2791	25919	26011	38264;38265	38265					-0.041602720561513706
SQNTDMVQK	9	Unmodified	_SQNTDMVQK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7477416992188	2	525.747856	1049.48116	1.7712	0.00093118	-2.1938	-0.0011534	-0.42269	-0.00022223	525.7469226997031	17.845	0.32076	17.845	17.735	18.055	0					13	6	3	0	0	0	0.0015666	1	5363	5363		177.3	78.675	1	6145400			37804	2791	25919	26011	38266	38266					-0.041602720561513706
SQNTDMVQK	9	Unmodified	_SQNTDMVQK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7484741210938	2	525.747856	1049.48116	1.181	0.0006209	-0.26368	-0.00013863	0.9173	0.00048227	525.7478000457851	17.647	0.15369	17.647	17.598	17.751	0					6	3	2	0	0	0	0.022698	2	4452	4433;4452		117.53	32.365	1	699950			37805	2791	25919	26011	38267;38268	38268					-0.041602720561513706
SQNTDMVQK	9	Unmodified	_SQNTDMVQK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7476196289062	2	525.747856	1049.48116	-1.2365	-0.00065006	2.0214	0.0010627	0.78493	0.00041268	525.7491906063468	17.681	0.19378	17.681	17.588	17.781	0					9	4	3	0	0	0	0.010427	1	4444	4444		140.11	75.905	1	279600			37806	2791	25919	26011	38269	38269					-0.041602720561513706
SQNTDMVQK	9	Unmodified	_SQNTDMVQK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7479248046875	2	525.747856	1049.48116	1.627	0.0008554	-2.0189	-0.0010615	-0.39193	-0.00020606	525.7470895810926	17.826	0.26123	17.826	17.717	17.978	0					12	5	3	0	0	0	0.015992	1	5224	5224		128.6	35.459	1	4477300			37807	2791	25919	26011	38270	38270					-0.041602720561513706
SQPAQSAV	8	Unmodified	_SQPAQSAV_					0	0	0			REV__nc|ENSG00000185359|O14964-2|HGS	REV__nc|ENSG00000185359|O14964-2|HGS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.2007751464844	2	394.200867	786.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.682	1	14.682	14.182	15.182	0								0	0	0	1.7419	1	3862	3862		47.657	1.7054	1		+		37808	17022	25920	26012	38271	38271					-0.01455623096137515
SQPASIQPVV	10	Unmodified	_SQPASIQPVV_					0	0	0			REV__ENSG00000102900|ENST00000308159|NUP93	REV__ENSG00000102900|ENST00000308159|NUP93	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.284912109375	2	513.284931	1024.55531	1.2978	0.00066614	-0.6552	-0.0003363	0.64261	0.00032984	513.2846072379218	32.563	0.3554	32.563	32.447	32.802	0					20	9	3	0	0	0	0.39566	1	12376	12376		56.721	3.3696	1	456120	+		37809	13653	25921	26013	38272	38272					0.04401439097682669
SQPIGISKY	9	Unmodified	_SQPIGISKY_					0	0	0		tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7747802734375	2	496.7742	991.533846	0.1445	7.1783E-05	0.96566	0.00047971	1.1102	0.0005515	496.77467880440565	34.414	0.18992	34.414	34.352	34.542	0					10	6	2	0	0	0	0.14603	1	12186	12186		68.787	0.30212	1	100830			37810	22779	25922	26014	38273	38273					0.037740540689469526
SQPLDFEKIQ	10	Unmodified	_SQPLDFEKIQ_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.21234130859375	3	402.211794	1203.61355	-0.59654	-0.00023994	1.2268	0.00049342	0.63023	0.00025348	402.2123813054489	17.743	1.0537	17.743	17.632	18.685	0					71	21	6	0	0	0	0.57211	1	5406	5406		37.508	9.4267	1	26680000			37811	7333	25923	26015	38274	38274					0.019890759522922963
SQPLGPRII	9	Unmodified	_SQPLGPRII_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.79791259765625	2	490.798009	979.581465	-0.55361	-0.00027171	0.24473	0.00012011	-0.30888	-0.0001516	490.79813156962723	35.475	0.47045	35.475	35.33	35.801	0					22	9	4	0	0	0	0.41113	1	13692	13692		40.778	2.9666	1	1090300			37812	7979	25924	26016	38275	38275					0.09085753059810031
SQPSKGGLLE	10	Unmodified	_SQPSKGGLLE_					0	0	0		nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	nc|ENSG00000141971|Q96EY5-3|MVB12A	nc|ENSG00000141971|Q96EY5-3|MVB12A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2745056152344	2	508.274564	1014.53457	0.90873	0.00046188	0.34127	0.00017346	1.25	0.00063535	508.2748460032104	23.338	0.12278	23.338	23.26	23.383	0					6	3	2	0	0	0	0.6796	1	6734	6734		24.519	2.5593	1	102650			37813	4479	25925	26017	38276	38276					0.027888487180234733
SQQGKPLRK	9	Unmodified	_SQQGKPLRK_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3;STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.3114624023438	2	521.311815	1040.60908	1.6239	0.00084656	-1.4887	-0.00077607	0.13521	7.0489E-05	521.3108676783424	12.097	0.17502	12.097	12.014	12.189	0					7	4	2	0	0	0	0.17062	1	2487	2487		58.23	12.278	1	111770			37814	2977	25926	26018	38277	38277					0.09039656320032918
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.8169555664062	2	515.816399	1029.61824	1.318	0.00067985	0.057105	2.9456E-05	1.3751	0.0007093	515.8165359806515	17.206	0.10505	17.206	17.172	17.277	0					7	3	3	0	0	0	0.014648	1	4068	4068		131.12	42.939	1	179460			37815	1011	25927	26019	38278	38278					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.8165893554688	2	515.816399	1029.61824	1.2214	0.00063002	-0.8801	-0.00045397	0.34131	0.00017605	515.815925365659	17.543	0.20839	17.543	17.46	17.668	0					11	5	3	0	0	0	0.0066803	1	4978	4978		150.81	10.698	1	2554000			37816	1011	25927	26019	38279	38279					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.2132263183594	3	344.213358	1029.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.299	1	17.299	16.799	17.799	0								0	0	0	0.26578	1	4310	4310		48.602	16.967	1				37817	1011	25927	26019	38280	38280					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.816650390625	2	515.816399	1029.61824	0.83286	0.0004296	-0.75338	-0.00038861	0.079483	4.0999E-05	515.8160319700839	17.509	0.2632	17.509	17.405	17.668	0					10	5	3	0	0	0	0.0066803	1	5200	5200		150.81	21.389	1	1326300			37818	1011	25927	26019	38281	38281					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8173828125	2	515.816399	1029.61824	1.1171	0.00057621	0.3835	0.00019781	1.5006	0.00077403	515.8168444135824	17.29	0.20131	17.29	17.2	17.401	0					6	5	2	0	0	0	0.014648	1	4285	4285		131.12	16.221	1	170960			37819	1011	25927	26019	38282	38282					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8165893554688	2	515.816399	1029.61824	0.74607	0.00038484	-0.45902	-0.00023677	0.28705	0.00014807	515.8162263263404	17.287	0.08902	17.287	17.227	17.316	0					4	2	2	0	0	0	0.01942	1	4282	4282		122.94	16.256	1	97577			37820	1011	25927	26019	38283	38283					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.816650390625	2	515.816399	1029.61824	0.17197	8.8707E-05	0.1521	7.8455E-05	0.32407	0.00016716	515.8165072330676	17.49	0.16776	17.49	17.379	17.547	0					10	3	4	0	0	0	0.0066803	1	5040	5040		150.81	19.194	1	941950			37821	1011	25927	26019	38284	38284					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;NOX1|p.R290H|1|0.17|ENSG00000007952|chrX:100851261-100851261|C/T|missense_variant;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.81640625	2	515.816399	1029.61824	1.514	0.00078095	-1.2733	-0.0006568	0.24068	0.00012415	515.8157152672991	17.472	0.2172	17.472	17.363	17.58	0					8	4	3	0	0	0	0.013298	1	5057	5057		133.99	21.886	1	1954700			37822	1011	25927	26019	38285	38285					0.10462004885675924
SQQNATVLK	9	Unmodified	_SQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7745361328125	2	494.774731	987.534909	0.68403	0.00033844	-1.1228	-0.00055555	-0.4388	-0.00021711	494.7743266897529	19.338	0.51062	19.338	19.115	19.625	0					19	10	3	0	0	0	0.0063888	1	6099	6099		152.06	27.981	1	1841600			37823	9457	25928	26020	38286	38286					0.040642684378553895
SQQNATVLK	9	Unmodified	_SQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7745361328125	2	494.774731	987.534909	-2.4789	-0.0012265	2.903	0.0014363	0.42405	0.00020981	494.7762262191934	19.146	0.18155	19.146	19.093	19.274	0					5	4	2	0	0	0	0.047855	1	5151	5151		96.034	10.873	1	281220			37824	9457	25928	26020	38287	38287					0.040642684378553895
SQQPIRLTP	9	Unmodified	_SQQPIRLTP_					0	0	0		ENST00000515837.6_1_11:61165377-61165809:+|nuORF;ENST00000334888.9_1_11:61165377-61165809:+|nuORF	ENST00000515837.6_1_11:61165377-61165809:+|nuORF	ENST00000515837.6_1_11:61165377-61165809:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.2016906738281	3	347.201341	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.018	1	17.018	16.518	17.518	0								0	0	0	0.32356	1	4183	4183		30.318	10.321	1				37825	8696	25929	26021	38288	38288					0.064445477088384
SQQRIALVK	9	Unmodified	_SQQRIALVK_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.21807861328125	3	348.217102	1041.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.538	1	25.538	25.038	26.038	0								0	0	0	0.35737	1	7691	7691		23.523	3.5259	1		+		37826	15412	25930	26022	38289	38289					0.110328269798174
SQQSKKVW	8	Unmodified	_SQQSKKVW_					0	0	0		nc|ENSG00000026508|P16070-19|CD44	nc|ENSG00000026508|P16070-19|CD44	nc|ENSG00000026508|P16070-19|CD44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.8504333496094	3	330.85042	989.529429	1.5029	0.00049724	-1.6471	-0.00054495	-0.14423	-4.7718E-05	330.84990349066567	16.904	0.26234	16.904	16.801	17.064	0					12	5	3	0	0	0	0.60719	1	4936	4936		58.782	23.63	1	1423400			37827	11421	25931	26023	38290	38290					0.034245896460333825
SQRCSRHRRV	10	Unmodified	_SQRCSRHRRV_					0	0	0		CACNA1E|p.R920C|1|0.12|ENSG00000198216|chr1:181732844-181732844|C/T|missense_variant	CACNA1E|p.R920C|1|0.12|ENSG00000198216|chr1:181732844-181732844|C/T|missense_variant	CACNA1E|p.R920C|1|0.12|ENSG00000198216|chr1:181732844-181732844|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	642.8427734375	2	642.844353	1283.67415	-2.3006	-0.0014789	-0.50304	-0.00032337	-2.8036	-0.0018023	642.8442756293017	29.652	0.12228	29.652	29.604	29.726	0					5	3	2	0	0	0	0.70877	1	10010	10010		20.947	1.8434	1	69694			37828	348	25932	26024	38291	38291					0.04366327574211937
SQRSSELNTI	10	Unmodified	_SQRSSELNTI_					0	0	0		ENSG00000071073|ENST00000393487|MGAT4A	ENSG00000071073|ENST00000393487|MGAT4A	ENSG00000071073|ENST00000393487|MGAT4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.2799682617188	2	567.791109	1133.56767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.832	1	20.832	20.332	21.332	0								0	0	0	0.15566	1	6527	6527		69.628	0	1				37829	1467	25933	26025	38292	38292					0.006224307700676945
SQSQEATKNQ	10	Unmodified	_SQSQEATKNQ_					0	0	0			REV__ENST00000432012.1_1_1:24792390-24792576:+|nuORF	REV__ENST00000432012.1_1_1:24792390-24792576:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7661743164062	2	560.765091	1119.51563	1.815	0.0010178	-0.34522	-0.00019359	1.4697	0.00082418	560.7649562643727	26.943	1.7713	26.943	26.761	28.532	0					104	36	5	0	0	0	0.45669	1	9866	9866		50.034	50.034	1	13451000	+		37830	19172	25934	26026	38293	38293					-0.03934732643733696
SQSSHKELFI	10	Unmodified	_SQSSHKELFI_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.8096313476562	2	588.306395	1174.59824	3.1885	0.0018758	0.16128	9.4883E-05	3.3498	0.0019707	588.3066671279729	28.486	0.5661	28.486	28.277	28.843	0					23	11	3	0	0	0	0.06456	1	10315	10315		82.75	0	1	2746200	+		37831	21216	25935	26027	38294	38294					0.01792209155087221
SQSTYLIR	8	Unmodified	_SQSTYLIR_					0	0	0		ENSG00000141040|ENST00000395825|ZNF287	ENSG00000141040|ENST00000395825|ZNF287	ENSG00000141040|ENST00000395825|ZNF287	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.26348876953125	2	484.263999	966.513445	0.66815	0.00032356	-1.8689	-0.00090504	-1.2007	-0.00058148	484.26306502685685	34.391	0.3276	34.391	34.258	34.585	0					12	8	2	0	0	0	0.61925	1	13278	13278		45.972	5.1941	1	286900			37832	4424	25936	26028	38295	38295					0.02884883409149097
SQTKGLMNA	9	Unmodified	_SQTKGLMNA_					0	0	0			REV__KIAA0232|p.T785Nfs*3|1|0.28|ENSG00000170871|chr4:6862728-6862729|-/A|frameshift_variant	REV__KIAA0232|p.T785Nfs*3|1|0.28|ENSG00000170871|chr4:6862728-6862729|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.24237060546875	2	475.242209	948.469866	-0.42229	-0.00020069	-0.30803	-0.00014639	-0.73033	-0.00034708	475.24211404104955	22.381	0.46083	22.381	22.157	22.618	0					23	10	4	0	0	0	0.032052	1	6628	6628		107.01	10.974	1	4037400	+		37833	16380	25937	26029	38296	38296					-0.006430493596553788
SQTYMAMY	8	Unmodified	_SQTYMAMY_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.70556640625	2	497.704071	993.393589	2.9122	0.0014494	0.34163	0.00017003	3.2539	0.0016195	497.7041575826466	14.737	0.31786	14.737	14.677	14.995	0					12	6	3	0	0	0	0.7126	1	3747	3747		31.955	3.7006	1	927980			37834	5404	25938	26030	38297	38297					-0.10337189251299606
SQVDNSVQQ	9	Unmodified	_SQVDNSVQQ_					0	0	0		nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7386169433594	2	502.735803	1003.45705	2.9302	0.0014731	1.565	0.00078678	4.4952	0.0022599	502.73744775890043	11.899	0.61873	11.899	11.797	12.415	0					42	18	5	0	0	0	0.034359	1	2392	2392		104.75	25.296	1	5472500			37835	11419	25939	26031	38298	38298					-0.04453789218177917
SQVPCFRVLV	10	Carbamidomethyl (C)	_SQVPC(Carbamidomethyl (C))FRVLV_	SQVPC(1)FRVLV		SQVPC(41)FRVLV		0	1	0		ENSG00000145214|ENST00000273814|DGKQ	ENSG00000145214|ENST00000273814|DGKQ	ENSG00000145214|ENST00000273814|DGKQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.221923828125	3	402.221748	1203.64341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.579	1	19.579	19.079	20.079	0								0	0	0	0.3598	1	6079	6079		41.427	7.3401	1				37836	4659	25940	26032	38299	38299	195				0.049737364166276166
SQYSKLLL	8	Unmodified	_SQYSKLLL_					0	0	0		nc|ENSG00000022840|Q8N5U6-2|RNF10;ENSG00000022840|ENST00000325954|RNF10;ENST00000543675.5_1_12:120995397-121001178:+|nuORF	nc|ENSG00000022840|Q8N5U6-2|RNF10	nc|ENSG00000022840|Q8N5U6-2|RNF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2796936035156	2	476.279118	950.543683	0.77826	0.00037067	-1.4629	-0.00069674	-0.68462	-0.00032607	476.2784371045457	46.475	0.077332	46.475	46.444	46.521	0					5	3	2	0	0	0	0.65276	1	18605	18605		40.573	0	1	39426			37837	1113	25941	26033	38300	38300					0.06643242074335376
SQYTMGQK	8	Unmodified	_SQYTMGQK_					0	0	0		nc|ENSG00000100578|Q9BVV6-4|KIAA0586;KIAA0586|p.P1497Lfs*6|1|0.11|ENSG00000100578|chr14:58547816-58547816|C/-|frameshift_variant;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586;KIAA0586|p.S722Qfs*8|1|0.39|ENSG00000100578|chr14:58465980-58465980|T/-|frameshift_variant;KIAA0586|p.K791Rfs*14|1|0.33|ENSG00000100578|chr14:58467891-58467891|A/-|frameshift_variant;nc|ENSG00000100578|Q9BVV6-2|KIAA0586;ENST00000557192.1_1_14:58896136-58899908:+|nuORF;KIAA0586|p.L223Hfs*12|1|0.04|ENSG00000100578|chr14:58444079-58444080|-/CATTT|frameshift_variant	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7209777832031	2	471.72111	941.427666	-0.017522	-8.2656E-06	-0.88937	-0.00041954	-0.9069	-0.0004278	471.7208745624448	25.607	0.62661	25.607	25.416	26.043	0					37	18	3	0	0	0	0.7126	1	7661	7661		31.955	2.8053	1	324550			37838	2044	25942	26034	38301	38301					-0.04539024768018862
SRAAMAGPEGA	11	Unmodified	_SRAAMAGPEGA_					0	0	0			REV__ENST00000536794.6_1_17:982067-982175:-|nuORF	REV__ENST00000536794.6_1_17:982067-982175:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2396545410156	2	509.242741	1016.47093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.278	1	31.278	30.778	31.778	0								0	0	0	0.29423	1	10749	10749		52.937	1.6012	1		+		37839	20108	25943	26035	38302	38302					-0.03664834990740928
SRAEYEADV	9	Unmodified	_SRAEYEADV_					0	0	0			REV__nc|ENSG00000149182|Q8N6H7-3|ARFGAP2	REV__nc|ENSG00000149182|Q8N6H7-3|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7403564453125	2	520.238178	1038.4618	1.0071	0.00052394	-0.46124	-0.00023995	0.54588	0.00028399	520.23798009731	24.279	0.35549	24.279	24.124	24.48	0					13	8	2	0	0	0	0.35021	1	7536	7536		45.972	11.8	1	291640	+		37840	15405	25944	26036	38303	38303					-0.05588905075433104
SRAGGQGHAR	10	Unmodified	_SRAGGQGHAR_					0	0	0			REV__ENST00000215941.8_1_22:38236204-38239997:-|nuORF	REV__ENST00000215941.8_1_22:38236204-38239997:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7588806152344	2	498.757738	995.500923	2.9165	0.0014546	-0.56654	-0.00028257	2.3499	0.0011721	498.7573284519211	35.253	0.47448	35.253	35.145	35.62	0					20	9	3	0	0	0	0.047644	1	13603	13603		110.12	110.12	1	3210200	+		37841	17877	25945	26037	38304	38304					0.002992847894688566
SRAKSAKGVL	10	Unmodified	_SRAKSAKGVL_					0	0	0		nc|ENSG00000166845|Q8IYD9|LAS2;ENSG00000166845|ENST00000620105|C18orf54	nc|ENSG00000166845|Q8IYD9|LAS2	nc|ENSG00000166845|Q8IYD9|LAS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.81610107421875	2	508.81419	1015.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.176	1	31.176	30.676	31.676	0								0	0	0	0.40797	1	10002	10002		28.081	0.19925	1				37842	5934	25946	26038	38305	38305					0.1066454046281251
SRAPHAVAIH	10	Unmodified	_SRAPHAVAIH_					0	0	0			REV__ENST00000259486.10_1_8:120613639-120620170:-|nuORF	REV__ENST00000259486.10_1_8:120613639-120620170:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7963256835938	2	529.796332	1057.57811	-1.1934	-0.00063228	0.99017	0.00052459	-0.20327	-0.00010769	529.7969167747975	31.191	0.29334	31.191	31.095	31.388	0					18	8	3	0	0	0	0.52707	1	10701	10701		42.396	42.396	1	323840	+		37843	18005	25947	26039	38306	38306					0.05162503005794861
SRAPPGLRFL	10	Unmodified	_SRAPPGLRFL_					0	0	0		ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.3319091796875	2	557.330008	1112.64546	1.2967	0.00072271	1.7176	0.00095726	3.0143	0.00168	557.8318064728312	17.12	0.10839	17.12	17.064	17.172	0					6	3	2	0	0	0	0.71484	1	4039	4039		19.997	0.89325	1	45135			37844	10131	25948	26040	38307	38307					0.09364533216762538
SRAPVRMR	8	Unmodified	_SRAPVRMR_					0	0	0		ENST00000305386.3_1_14:50087520-50087640:+|nuORF	ENST00000305386.3_1_14:50087520-50087640:+|nuORF	ENST00000305386.3_1_14:50087520-50087640:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7793273925781	2	486.779628	971.544702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.283	1	33.283	32.783	33.783	0								0	0	0	1.7419	1	10810	10810		45.952	7.1983	1				37845	8513	25949	26041	38308	38308					0.05779177962256199
SRATPQALL	9	Unmodified	_SRATPQALL_					0	0	0		ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18	ENSG00000127586|ENST00000262315|CHTF18	ENSG00000127586|ENST00000262315|CHTF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7797546386719	2	478.779816	955.545079	-0.11579	-5.5438E-05	-0.85714	-0.00041038	-0.97293	-0.00046582	478.7795539299531	16.773	0.69964	16.773	16.28	16.98	0					40	14	4	0	0	0	0.22377	1	4921	4921		58.782	0	1	874710			37846	3514	25950	26042	38309	38309					0.0655287616308442
SRCFIRKS	8	Unmodified	_SRCFIRKS_					0	0	0		ENST00000517970.5_1_8:87393769-87393850:+|nuORF	ENST00000517970.5_1_8:87393769-87393850:+|nuORF	ENST00000517970.5_1_8:87393769-87393850:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.7745666503906	2	498.774011	995.533469	-0.23703	-0.00011822	1.1531	0.00057512	0.91605	0.0004569	498.77450685880706	11.054	0.11134	11.054	10.984	11.096	0					9	6	2	0	0	0	0.78641	1	2105	2105		1.3276	0	1	60720			37847	10276	25951	26043	38310	38310					0.03552355868112045
SRCPPSRRS	9	Unmodified	_SRCPPSRRS_					0	0	0		CCDC116|p.S388Pfs*52|1|0.27|ENSG00000161180|chr22:21635220-21635220|C/-|frameshift_variant	CCDC116|p.S388Pfs*52|1|0.27|ENSG00000161180|chr22:21635220-21635220|C/-|frameshift_variant	CCDC116|p.S388Pfs*52|1|0.27|ENSG00000161180|chr22:21635220-21635220|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2711181640625	2	523.269624	1044.5247	1.6997	0.00088943	1.5233	0.0007971	3.2231	0.0016865	523.2703428352728	34.221	0.20135	34.221	34.105	34.306	0					9	5	2	0	0	0	0.33044	1	12742	12742		47.657	1.6851	1	122150			37848	394	25952	26044	38311	38311					0.004213822316160076
SRCWHGCGDQ	10	Unmodified	_SRCWHGCGDQ_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|45|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.72216796875	2	574.721649	1147.42875	-0.20575	-0.00011825	1.385	0.00079599	1.1793	0.00067774	574.7223611318834	12.415	0.46234	12.415	12.126	12.588	0					28	11	4	0	0	0	0.69544	1	2777	2777		22.58	1.6327	1	487480			37849	11304	25953	26045	38312	38312					-0.13907133670772964
SRDEGSSVRL	10	Unmodified	_SRDEGSSVRL_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2863159179688	2	553.283451	1104.55235	1.8188	0.0010063	3.4444	0.0019057	5.2632	0.002912	553.2855017854673	41.858	0.17481	41.858	41.715	41.889	0					7	5	2	0	0	0	0.1998	1	16665	16665		79.489	1.2253	1	94807			37850	3131	25954	26046	38313	38313					0.004255639728853566
SRDGLEDEK	9	Unmodified	_SRDGLEDEK_					0	0	0			REV__ENST00000525547.5_1_11:112014321-112020942:-|nuORF	REV__ENST00000525547.5_1_11:112014321-112020942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7484130859375	2	524.74891	1047.48327	0.1111	5.8299E-05	-0.68782	-0.00036093	-0.57672	-0.00030263	524.7485549249108	18.233	0.37124	18.233	18.122	18.493	0					14	7	3	0	0	0	0.13267	1	5546	5546		71.877	0	1	4431700	+		37851	15454	25955	26047	38314	38314					-0.03857520046722129
SRDHLYLP	8	Unmodified	_SRDHLYLP_					0	0	0		NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant;nc|ENSG00000072736|Q12968-5|NFATC3;nc|ENSG00000072736|Q12968-6|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF;NFATC3|p.G218Afs*38|1|0.32|ENSG00000072736|chr16:68122532-68122532|G/-|frameshift_variant	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7640380859375	2	500.764166	999.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.6	1	38.6	38.1	39.1	0								0	0	0	1.7419	1	13805	13805		47.916	3.7988	1				37852	1498	25956	26048	38315	38315					0.01400303128991709
SRDKCFTPF	9	Unmodified	_SRDKCFTPF_					0	0	0			REV__ENST00000598913.5_1_19:39874412-39874778:+|nuORF	REV__ENST00000598913.5_1_19:39874412-39874778:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.761474609375	2	550.763309	1099.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.035	1	23.035	22.535	23.535	0								0	0	0	0.24724	1	6963	6963		44.117	3.3386	1		+		37853	20585	25957	26049	38316	38316					-0.03371073951279868
SRDSIKLQ	8	Unmodified	_SRDSIKLQ_					0	0	0			REV__STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant	REV__STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7690734863281	2	473.769448	945.524344	0.60302	0.00028569	-0.20596	-9.7577E-05	0.39707	0.00018812	473.7688487456853	18.348	0.218	18.348	18.241	18.459	0					8	4	3	0	0	0	0.32815	1	5631	5631		79.451	2.6044	1	1219800	+		37854	13910	25958	26050	38317	38317					0.049402857834252245
SREMFLIGCK	10	Unmodified	_SREMFLIGCK_					0	0	0			REV__nc|ENSG00000256060|Q8IVP9-2|ZNF547	REV__nc|ENSG00000256060|Q8IVP9-2|ZNF547	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.3035888671875	2	592.301744	1182.58893	3.1772	0.0018819	-0.35596	-0.00021084	2.8213	0.001671	592.3014933793924	40.968	0.4512	40.968	40.735	41.186	0					21	8	4	0	0	0	0.2978	1	16253	16253		67.494	11.989	1	1067200	+		37855	15508	25959	26051	38318	38318					0.004944012735677461
SRENQAPFE	9	Unmodified	_SRENQAPFE_					0	0	0			REV__ENST00000396522.6_1_14:21967741-21972178:-|nuORF	REV__ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2521362304688	2	539.25162	1076.48869	-0.14017	-7.5585E-05	1.1209	0.00060442	0.98069	0.00052884	539.2519545267063	23.882	0.13964	23.882	23.827	23.967	0					7	5	2	0	0	0	0.48389	1	7241	7241		34.173	1.422	1	73619	+		37856	18900	25960	26052	38319	38319					-0.04649796464218525
SREVGEHL	8	Unmodified	_SREVGEHL_					0	0	0		nc|ENSG00000154889|Q53F39-5|MPPE1;ENST00000592447.5_1_18:11886825-11897263:-|nuORF	nc|ENSG00000154889|Q53F39-5|MPPE1	nc|ENSG00000154889|Q53F39-5|MPPE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.73895263671875	2	463.738148	925.461744	0.7399	0.00034312	0.88601	0.00041087	1.6259	0.00075399	463.73856271864497	31.112	0.50674	31.112	30.913	31.42	0					31	10	4	0	0	0	0.60719	1	11660	11660		47.916	8.6628	1	883380			37857	10971	25961	26053	38320	38320					-0.003968602847521652
SRFLGHHFH	9	Unmodified	_SRFLGHHFH_					0	0	0		THG1L|p.V7Gfs*36|1|0.31|ENSG00000113272|chr5:157731457-157731461|AAGTT/-|frameshift_variant	THG1L|p.V7Gfs*36|1|0.31|ENSG00000113272|chr5:157731457-157731461|AAGTT/-|frameshift_variant	THG1L|p.V7Gfs*36|1|0.31|ENSG00000113272|chr5:157731457-157731461|AAGTT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.2835693359375	2	569.288674	1136.5628	1.7561	0.00099971	-3.2646	-0.0018585	-1.5086	-0.00085881	569.2871788426313	26.335	1.3895	26.335	26.247	27.636	0					87	33	5	0	0	0	0.48389	1	9289	9289		34.173	3.8548	1	5326900			37858	22530	25962	26054	38321	38321					-2.3637913955099066E-05
SRGAVAILL	9	Unmodified	_SRGAVAILL_					0	0	0			REV__ENST00000367874.4_1_1:166845454-166845523:-|nuORF	REV__ENST00000367874.4_1_1:166845454-166845523:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2873840332031	2	450.287277	898.560001	0.029012	1.3064E-05	0.3195	0.00014387	0.34851	0.00015693	450.2874954989904	11.668	0.10587	11.668	11.609	11.715	0					7	4	2	0	0	0	0.2873	1	2207	2207		51.335	0	1	52732	+		37859	18601	25963	26055	38322	38322					0.10666368031104412
SRGAVAILL	9	Unmodified	_SRGAVAILL_					0	0	0			REV__ENST00000367874.4_1_1:166845454-166845523:-|nuORF	REV__ENST00000367874.4_1_1:166845454-166845523:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2870788574219	2	450.287277	898.560001	0.63433	0.00028563	-1.1283	-0.00050805	-0.49395	-0.00022242	450.28676571983794	11.912	0.1873	11.912	11.854	12.041	0					13	6	3	0	0	0	0.16524	1	2433	2433		65.803	2.2693	1	2262800	+		37860	18601	25963	26055	38323	38323					0.10666368031104412
SRGGKGRHS	9	Unmodified	_SRGGKGRHS_					0	0	0			REV__ENST00000568470.5_1_16:66968788-66968911:+|nuORF	REV__ENST00000568470.5_1_16:66968788-66968911:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.25579833984375	2	471.254831	940.49511	2.4928	0.0011747	-0.32221	-0.00015184	2.1706	0.0010229	471.25468565921506	14.986	0.16817	14.986	14.928	15.096	0					5	3	2	0	0	0	0.11898	1	3862	3862		75.043	75.043	1	1117600	+		37861	20361	25964	26056	38324	38324					0.02248186277813602
SRGGPVSRSP	10	Unmodified	_SRGGPVSRSP_					0	0	0		ENST00000598375.5_1_19:18699853-18700318:+|nuORF	ENST00000598375.5_1_19:18699853-18700318:+|nuORF	ENST00000598375.5_1_19:18699853-18700318:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2680969238281	2	500.270147	998.525741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.607	1	27.607	27.107	28.107	0								0	0	0	0.39264	1	8815	8815		32.751	2.2469	1				37862	11017	25965	26057	38325	38325					0.026419198721896464
SRGKGEWGKL	10	Unmodified	_SRGKGEWGKL_					0	0	0			REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF	REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.3084106445312	2	559.309272	1116.60399	0.51652	0.00028889	-1.6158	-0.00090376	-1.0993	-0.00061486	559.3086620995082	42.814	0.21043	42.814	42.725	42.935	0					13	10	2	0	0	0	0.64162	1	16199	16199		29.17	15.033	1	57324	+		37863	20311	25966	26058	38326	38326					0.050353524574120456
SRGNATMTY	9	Unmodified	_SRGNATMTY_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.72930908203125	2	500.729466	999.444379	0.4027	0.00020164	0.28909	0.00014475	0.69178	0.0003464	500.72924905501645	33.821	0.24701	33.821	33.738	33.985	0					16	10	3	0	0	0	0.35021	1	11009	11009		45.972	5.3996	1	85803	+		37864	15888	25967	26059	38327	38327					-0.05536523882062738
SRGNATMTY	9	Unmodified	_SRGNATMTY_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7293395996094	2	500.729466	999.444379	0.66142	0.00033119	-0.27642	-0.00013841	0.385	0.00019278	500.729178272199	34.065	0.34716	34.065	33.959	34.306	0					25	9	3	0	0	0	0.17854	1	12641	12641		64.207	6.396	1	646500	+		37865	15888	25967	26059	38328	38328					-0.05536523882062738
SRGPSQVEREG	11	Unmodified	_SRGPSQVEREG_					0	0	0		PITPNM1|p.A1216V|1|0.2|ENSG00000110697|chr11:67492121-67492121|G/A|missense_variant	PITPNM1|p.A1216V|1|0.2|ENSG00000110697|chr11:67492121-67492121|G/A|missense_variant	PITPNM1|p.A1216V|1|0.2|ENSG00000110697|chr11:67492121-67492121|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.2988891601562	2	601.299633	1200.58471	0.27661	0.00016633	-2.807	-0.0016879	-2.5304	-0.0015215	601.2974423712309	46.758	0.17645	46.758	46.659	46.836	0					17	10	2	0	0	0	0.48922	1	17918	17918		45.022	7.2107	1	48188			37866	11938	25968	26060	38329	38329					-0.007556486241583116
SRGRRAKK	8	Unmodified	_SRGRRAKK_					0	0	0			REV__nc|ENSG00000113282|Q14677-2|CLINT1	REV__nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.8055725097656	2	479.804491	957.59443	2.3008	0.0011039	0.070275	3.3718E-05	2.371	0.0011376	479.8044413405806	12.863	0.29231	12.863	12.756	13.049	0					12	6	3	0	0	0	0.53424	1	2853	2853		56.721	56.721	1	1168600	+		37867	14033	25969	26061	38330	38330					0.11393628962548519
SRGTVHHIL	9	Unmodified	_SRGTVHHIL_					0	0	0		ENST00000219139.7_1_16:67181056-67181152:+|nuORF	ENST00000219139.7_1_16:67181056-67181152:+|nuORF	ENST00000219139.7_1_16:67181056-67181152:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2913513183594	2	510.290882	1018.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.254	1	50.254	49.754	50.754	0								0	0	0	0.22106	1	19845	19845		47.916	1.9636	1				37868	8170	25970	26062	38331	38331					0.05867100631530775
SRGWTQMQL	9	Unmodified	_SRGWTQMQL_					0	0	0		nc|ENSG00000184900|P55854-2|SUMO3;ENST00000466861.1_1_21:46233737-46238015:-|nuORF	nc|ENSG00000184900|P55854-2|SUMO3	nc|ENSG00000184900|P55854-2|SUMO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7778930664062	2	553.774208	1105.53386	3.6167	0.0020028	2.5462	0.00141	6.1629	0.0034129	553.7754449631851	36.905	0.40798	36.905	36.795	37.203	0					16	8	4	0	0	0	0.10915	1	14398	14398		77.318	3.1526	1	300470			37869	11682	25971	26063	38332	38332					-0.014682692026781297
SRHKSHDN	8	Unmodified	_SRHKSHDN_					0	0	0		PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7378234863281	2	490.736471	979.45839	0.59232	0.00029067	1.9527	0.00095826	2.545	0.0012489	490.73739489669947	21.88	0.31152	21.88	21.759	22.07	0					12	6	2	0	0	0	0.67394	1	7330	7330		37.159	6.6555	1	869460			37870	4643	25972	26064	38333	38333					-0.0321611033876934
SRIDLDEL	8	Unmodified	_SRIDLDEL_					0	0	0		ENSG00000113391|ENST00000395965|FAM172A;ENST00000502503.1_1_5:93300208-93410459:-|nuORF;ENST00000504768.2_1_5:93246475-93410459:-|nuORF;nc|ENSG00000113391|Q8WUF8-2|ARB2A;ENST00000506398.6_1_5:93217085-93410459:-|nuORF;FAM172A|p.V310Afs*9|1|0.04|ENSG00000113391|chr5:93784477-93784478|-/GTGCTGAGATGAATGGGTGTGAG|frameshift_variant	ENSG00000113391|ENST00000395965|FAM172A	ENSG00000113391|ENST00000395965|FAM172A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7530517578125	2	480.753464	959.492375	0.070617	3.395E-05	-0.53704	-0.00025818	-0.46642	-0.00022423	480.75317887537915	22.222	0.15936	22.222	22.12	22.279	0					8	5	2	0	0	0	0.37144	1	6246	6246		74.255	4.6274	1	107390			37871	2801	25973	26065	38334	38334					0.011008733096218748
SRKDQCKE	8	Unmodified	_SRKDQCKE_					0	0	0		ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2435302734375	2	497.242741	992.470928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.881	1	12.881	12.381	13.381	0								0	0	0	1.7419	1	3007	3007		45.972	1.8554	1				37872	5162	25974	26066	38335	38335					-0.02560834990742933
SRKGKHRR	8	Unmodified	_SRKGKHRR_					0	0	0			REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	REV__CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.2135009765625	3	342.212686	1023.61623	3.0232	0.0010346	-0.5231	-0.00017901	2.5001	0.00085557	342.21250060684946	16.965	0.26828	16.965	16.907	17.175	0					6	5	2	0	0	0	0.7887	1	4821	4821		15.642	2.1878	1	1097700	+		37873	12347	25975	26067	38336	38336					0.10536433711126847
SRKKSDRI	8	Unmodified	_SRKKSDRI_					0	0	0			REV__ENSG00000123575|ENST00000493442|FAM199X	REV__ENSG00000123575|ENST00000493442|FAM199X	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2940673828125	2	495.296165	988.577777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.904	1	25.904	25.404	26.404	0								0	0	0	1.7419	1	8263	8263		15.642	0	1		+		37874	14364	25976	26068	38337	38337					0.08303083285943558
SRKSQLTVHQ	10	Unmodified	_SRKSQLTVHQ_					0	0	0		ZNF577|p.M230T|1|0.26|ENSG00000161551|chr19:51873301-51873301|A/G|missense_variant	ZNF577|p.M230T|1|0.26|ENSG00000161551|chr19:51873301-51873301|A/G|missense_variant	ZNF577|p.M230T|1|0.26|ENSG00000161551|chr19:51873301-51873301|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.330810546875	2	592.330736	1182.64692	-0.043212	-2.5596E-05	0.10376	6.1458E-05	0.060544	3.5862E-05	592.330855554437	16.752	0.20183	16.752	16.647	16.849	0					11	4	4	0	0	0	0.43008	1	4858	4858		52.937	52.937	1	2484000			37875	23166	25977	26069	38338	38338					0.06290122514838004
SRKTATEII	9	Unmodified	_SRKTATEII_					0	0	0		tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1	tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1	tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.2011413574219	3	340.201229	1017.58186	0.22177	7.5447E-05	-0.4877	-0.00016591	-0.26592	-9.0467E-05	340.20108294058764	17.916	0.16857	17.916	17.83	17.999	0					11	4	4	0	0	0	0.60749	1	4373	4373		16.007	16.007	1	1405200			37876	22715	25978	26070	38339	38339					0.07377127989002474
SRKTTEKLL	9	Unmodified	_SRKTTEKLL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;ERCC5|p.T112I|1|0.06|ENSG00000134899|chr13:102853827-102853827|C/T|missense_variant;ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2217712402344	3	359.220513	1074.63971	3.0933	0.0011112	0.26594	9.5532E-05	3.3592	0.0012067	359.22063760813705	35.611	0.52055	35.611	35.296	35.817	0					18	10	3	0	0	0	0.50858	1	13774	13774		25.126	1.6033	1	1060400			37877	3949	25979	26071	38340	38340					0.10537389914429696
SRKWLTIL	8	Unmodified	_SRKWLTIL_					0	0	0			REV__ENST00000479512.5_1_3:50387244-50387426:-|nuORF	REV__ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.81634521484375	2	508.816202	1015.61785	-0.397	-0.000202	-0.15262	-7.7655E-05	-0.54962	-0.00027965	508.8161495123079	31.147	0.54799	31.147	30.965	31.513	0					22	12	2	0	0	0	0.59773	1	11756	11756		49.442	1.5259	1	317070	+		37878	19575	25980	26072	38341	38341					0.11066629956508223
SRLCNVVV	8	Carbamidomethyl (C)	_SRLC(Carbamidomethyl (C))NVVV_	SRLC(1)NVVV		SRLC(51)NVVV		0	1	0			REV__ENST00000484201.5_1_1:114440516-114447658:-|nuORF	REV__ENST00000484201.5_1_1:114440516-114447658:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.7640686035156	2	473.760569	945.506586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.726	1	20.726	20.226	21.226	0								0	0	0	1.7419	1	5837	5837		51.335	8.861	1		+		37879	12176	25981	26073	38342	38342	481				0.031652472569362544
SRLEGWLSLP	10	Unmodified	_SRLEGWLSLP_					0	0	0		ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant;ENSG00000134318|ENST00000315872|ROCK2;ENST00000460262.1_1_2:11334380-11335170:-|nuORF	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.5487060546875	3	386.548629	1156.62406	0.54896	0.0002122	-0.54665	-0.00021131	0.0023073	8.919E-07	386.5484286664452	24.221	0.79897	24.221	24.164	24.963	0					42	16	5	0	0	0	0.52275	1	8335	8335		33.039	3.4886	1	3851000			37880	3913	25982	26074	38343	38343					0.05201103397371298
SRLHRILY	8	Unmodified	_SRLHRILY_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3165283203125	2	529.3169	1056.61925	0.48026	0.00025421	-0.56193	-0.00029744	-0.081676	-4.3232E-05	529.3164873674453	27.715	0.11824	27.715	27.635	27.753	0					6	3	2	0	0	0	0.79719	1	8569	8569		18.324	0.062328	1	80318	+		37881	17167	25983	26075	38344	38344					0.09320264045277327
SRLILSAKSD	10	Unmodified	_SRLILSAKSD_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.31787109375	2	545.316763	1088.61897	2.3505	0.0012818	-0.16529	-9.0134E-05	2.1852	0.0011916	545.3165565870584	51.035	1.0997	51.035	50.832	51.932	0					96	70	3	0	0	0	0.68774	1	15920	15920		23.523	0	1	141560	+		37882	13443	25984	26076	38345	38345					0.07820799534761136
SRLNLLTP	8	Unmodified	_SRLNLLTP_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1;DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;ENST00000556045.5_1_14:95570385-95572406:-|nuORF	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2769775390625	2	457.276909	912.539266	0.76843	0.00035138	-1.0483	-0.00047938	-0.27991	-0.000128	457.2765688175472	22.004	0.17278	22.004	21.96	22.132	0					10	4	3	0	0	0	0.53424	1	7087	7087		56.721	1.9447	1	380940			37883	2057	25985	26077	38346	38346					0.07949777651424483
SRLNRSCE	8	Unmodified	_SRLNRSCE_					0	0	0			REV__ENST00000550216.1_1_12:70636609-70636892:-|nuORF	REV__ENST00000550216.1_1_12:70636609-70636892:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.73736572265625	2	482.735083	963.455613	2.3978	0.0011575	2.1938	0.001059	4.5915	0.0022165	482.7362355791485	15.52	0.21073	15.52	15.471	15.681	0					5	4	2	0	0	0	0.74405	1	4125	4125		27.882	2.3082	1	683470	+		37884	20193	25986	26078	38347	38347					-0.027577017879366394
SRLPHSAHP	9	Unmodified	_SRLPHSAHP_					0	0	0		PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant;nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;PARD3|p.S1335Lfs*15|1|0.17|ENSG00000148498|chr10:34111237-34111238|-/G|frameshift_variant;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3;nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-3|PARD3	PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant	PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.26715087890625	2	501.267407	1000.52026	-0.96566	-0.00048406	-0.48751	-0.00024438	-1.4532	-0.00072843	501.2672917634759	19.3	0.49207	19.3	18.898	19.39	0					24	15	3	0	0	0	0.39215	1	5088	5088		42.396	3.6425	1	212440			37885	4837	25987	26079	38348	38348					0.02002241080379008
SRLPQVEVGQL	11	Unmodified	_SRLPQVEVGQL_					0	0	0			REV__nc|ENSG00000135454|Q00973-3|B4GALNT1	REV__nc|ENSG00000135454|Q00973-3|B4GALNT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	613.3487548828125	2	613.348594	1224.68264	0.1641	0.00010065	-0.24189	-0.00014836	-0.077787	-4.7711E-05	613.3486339818922	29.9	0.16977	29.9	29.81	29.98	0					9	6	2	0	0	0	0.66391	1	9481	9481		28.081	0	1	108150	+		37886	14802	25988	26080	38349	38349					0.07928159971856985
SRLQIFCRE	9	Unmodified	_SRLQIFCRE_					0	0	0			REV__sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1	REV__sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.3023071289062	2	576.303133	1150.59171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.737	1	12.737	12.237	13.237	0								0	0	0	0.37517	1	2436	2436		6.7355	0.81444	1		+		37887	21554	25989	26081	38350	38350					0.022439927227196677
SRLSSATSK	9	Unmodified	_SRLSSATSK_					0	0	0			REV__ARHGAP32|p.K338Sfs*13|1|0.07|ENSG00000134909|chr11:128998459-128998459|T/-|frameshift_variant	REV__ARHGAP32|p.K338Sfs*13|1|0.07|ENSG00000134909|chr11:128998459-128998459|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.75860595703125	2	468.759081	935.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.922	1	13.922	13.422	14.422	0								0	0	0	0.22075	1	3279	3279		47.96	7.9014	1		+		37888	12206	25990	26082	38351	38351					0.0332769540375466
SRLTPAVAI	9	Unmodified	_SRLTPAVAI_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2840881347656	2	464.284734	926.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.161	1	37.161	36.661	37.661	0								0	0	0	0.27939	1	14519	14519		39.253	0	1				37889	10078	25991	26083	38352	38352					0.08870064168456793
SRMTIGMLIE	10	Oxidation (M)	_SRM(Oxidation (M))TIGMLIE_		SRM(0.691)TIGM(0.309)LIE		SRM(3.5)TIGM(-3.5)LIE	0	0	1		nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-5|POLR1B	nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.5360412597656	3	389.535115	1165.58352	3.1987	0.001246	-0.59289	-0.00023095	2.6058	0.0010151	389.5348514762594	24.796	0.45317	24.796	24.691	25.144	0					28	9	5	0	0	0	0.33468	1	8608	8608		63.426	63.426	2	6859600			37890	3422	25992	26084	38353	38353		148			0.0073467769109356595
SRNQLDRAQ	9	Unmodified	_SRNQLDRAQ_					0	0	0			REV__ENSG00000168040|ENST00000301838|FADD	REV__ENSG00000168040|ENST00000301838|FADD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2821044921875	2	544.283786	1086.55302	0.43718	0.00023795	-2.821	-0.0015354	-2.3838	-0.0012975	544.2825475456787	23.98	0.4252	23.98	23.701	24.126	0					26	14	2	0	0	0	0.22837	1	7222	7222		58.23	3.5076	1	146210	+		37891	16236	25993	26085	38354	38354					0.013204034125692488
SRNTLLTPAVA	11	Unmodified	_SRNTLLTPAVA_					0	0	0		nc|ENSG00000107560|Q7L804-2|RAB11FIP2	nc|ENSG00000107560|Q7L804-2|RAB11FIP2	nc|ENSG00000107560|Q7L804-2|RAB11FIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5556945800781	3	381.555784	1141.64552	-0.51811	-0.00019769	0.24932	9.5129E-05	-0.26879	-0.00010256	381.5558713760995	27.213	0.21985	27.213	27.103	27.323	0					8	4	2	0	0	0	0.58789	1	9723	9723		39.873	0	1	1093300			37892	11474	25994	26086	38355	38355					0.08036488426091637
SRPIEDLFR	9	Unmodified	_SRPIEDLFR_					0	0	0		ENSG00000120685|ENST00000352251|PROSER1;nc|ENSG00000120685|Q86XN7-2|PROSER1	ENSG00000120685|ENST00000352251|PROSER1	ENSG00000120685|ENST00000352251|PROSER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.8106689453125	2	566.809105	1131.60366	3.4699	0.0019667	-1.8006	-0.0010206	1.6693	0.00094616	566.8080453499302	11.46	0.11029	11.46	11.405	11.515	0					7	5	2	0	0	0	0.61124	1	2235	2235		6.3127	0	1	48804			37893	3181	25995	26087	38356	38356					0.04311932737573443
SRPLLPNQ	8	Unmodified	_SRPLLPNQ_					0	0	0			REV__ENSG00000183379|ENST00000331628|SYNDIG1L	REV__ENSG00000183379|ENST00000331628|SYNDIG1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.76641845703125	2	462.766709	923.518865	-0.14577	-6.7459E-05	-0.83787	-0.00038774	-0.98365	-0.0004552	462.7663865803812	18.942	0.11751	18.942	18.883	19.001	0					4	2	2	0	0	0	0.59773	1	5915	5915		49.442	7.0454	1	138790	+		37894	16932	25996	26088	38357	38357					0.054046069916125816
SRPLPQPD	8	Unmodified	_SRPLPQPD_					0	0	0			REV__ENST00000380359.3_1_10:5493865-5494450:+|nuORF	REV__ENST00000380359.3_1_10:5493865-5494450:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2427978515625	2	455.243067	908.47158	-0.51736	-0.00023553	-0.094953	-4.3226E-05	-0.61232	-0.00027875	455.2429505071275	17.258	0.47158	17.258	16.879	17.351	0					20	9	3	0	0	0	0.25987	1	5074	5074		95.815	5.4453	1	287270	+		37895	18771	25997	26089	38358	38358					0.013683277206155253
SRPPGVPAM	9	Unmodified	_SRPPGVPAM_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.240966796875	2	456.242012	910.469472	-0.38271	-0.00017461	-0.54333	-0.00024789	-0.92604	-0.0004225	456.2418831976811	28.506	1.6062	28.506	28.108	29.714	0					118	58	3	0	0	0	0.53083	1	9274	9274		29.15	0	1	473260	+		37896	17343	25998	26090	38359	38359					0.010655757111635467
SRPREKKGK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SRPREKKGK_					1	0	0			REV__ENST00000491662.1_1_8:98877671-98877710:+|nuORF	REV__ENST00000491662.1_1_8:98877671-98877710:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3375854492188	2	564.335821	1126.65709	1.8914	0.0010674	0.90334	0.00050979	2.7948	0.0015772	564.336248098805	33.997	2.6793	33.997	33.829	36.509	0					274	73	6	0	0	0	0.30841	2	13203	13203;13363		49.536	13.918	1	34739000	+		37897	17079	25999	26091	38360;38361	38360					0.09882730240110504
SRQNVAHII	9	Unmodified	_SRQNVAHII_					0	0	0			REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2982788085938	2	519.296165	1036.57778	3.357	0.0017433	0.20812	0.00010808	3.5651	0.0018514	519.2960710474093	50.226	0.42569	50.226	50.063	50.489	0					59	23	4	0	0	0	0.25109	1	19807	19807		55.504	5.4797	1	1039700	+		37898	21585	26000	26092	38362	38362					0.06095083285936198
SRREPFVAL	9	Unmodified	_SRREPFVAL_					0	0	0			REV__ENST00000581302.5_1_18:21057123-21059312:+|nuORF	REV__ENST00000581302.5_1_18:21057123-21059312:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8743896484375	3	358.873336	1073.59818	1.2823	0.00046017	1.354	0.00048592	2.6363	0.0009461	358.87386186264496	25.153	0.36916	25.153	24.946	25.315	0					17	7	4	0	0	0	0.55379	1	8781	8781		26.693	0.62953	1	1857100	+		37899	20454	26001	26093	38363	38363					0.0643225394574074
SRRGVSETAPA	11	Unmodified	_SRRGVSETAPA_					0	0	0		ENSG00000225950|ENST00000593537|NTF4	ENSG00000225950|ENST00000593537|NTF4	ENSG00000225950|ENST00000593537|NTF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.800537109375	2	565.799269	1129.58398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.194	1	23.194	22.694	23.694	0								0	0	0	0.40876	1	7038	7038		35.152	3.1972	1				37900	7875	26002	26094	38364	38364					0.024375567267952647
SRRPLVLLLA	10	Unmodified	_SRRPLVLLLA_					0	0	0			REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.1999206542969	3	379.920397	1136.73936	0.65598	0.00024922	0.2541	9.6539E-05	0.91009	0.00034576	379.92038335801897	16.039	0.21707	16.039	15.88	16.097	0					6	4	2	0	0	0	0.75135	1	4301	4301		12.812	1.1758	1	54960	+		37901	18656	26003	26095	38365	38365					0.17646252319036648
SRRRGAPR	8	Unmodified	_SRRRGAPR_					0	0	0		ENST00000454337.1_1_16:1697048-1706838:+|nuORF	ENST00000454337.1_1_16:1697048-1706838:+|nuORF	ENST00000454337.1_1_16:1697048-1706838:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.28753662109375	2	478.286466	954.558379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.4	1	18.4	17.9	18.9	0								0	0	0	1.7419	1	5376	5376		73.975	0	1				37902	9674	26004	26096	38366	38366					0.07928171785704308
SRRRRSMDP	9	Unmodified	_SRRRRSMDP_					0	0	0		ADAMTS6|p.D77V|1|0.11|ENSG00000049192|chr5:65471010-65471010|T/A|missense_variant;nc|ENSG00000049192|Q9UKP5-4|ADAMTS6;nc|ENSG00000049192|Q9UKP5-3|ADAMTS6;ENST00000470597.5_1_5:64558740-64769500:-|nuORF;nc|ENSG00000049192|Q9UKP5-2|ADAMTS6;ADAMTS6|p.D907Gfs*10|1|0.25|ENSG00000049192|chr5:65188206-65188207|-/C|frameshift_variant;ADAMTS6|p.E952Sfs*89|1|0.1|ENSG00000049192|chr5:65188073-65188073|T/-|frameshift_variant;ADAMTS6|p.I1077Ffs*10|1|0.37|ENSG00000049192|chr5:65170633-65170633|G/-|frameshift_variant;ENSG00000049192|ENST00000381055|ADAMTS6	ADAMTS6|p.D77V|1|0.11|ENSG00000049192|chr5:65471010-65471010|T/A|missense_variant	ADAMTS6|p.D77V|1|0.11|ENSG00000049192|chr5:65471010-65471010|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.8069458007812	2	580.806905	1159.59926	-0.028537	-1.6574E-05	0.33215	0.00019292	0.30361	0.00017634	580.8070830637807	19.608	0.19792	19.608	19.508	19.706	0					11	4	3	0	0	0	0.25716	1	5961	5961		54.776	1.8396	1	808520			37903	60	26005	26097	38367	38367					0.025841450430107216
SRRRRSNQ	8	Unmodified	_SRRRRSNQ_					0	0	0			REV__F13A1|p.V564Sfs*13|1|0.09|ENSG00000124491|chr6:6174637-6174637|C/-|frameshift_variant	REV__F13A1|p.V564Sfs*13|1|0.09|ENSG00000124491|chr6:6174637-6174637|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.297607421875	2	530.297562	1058.58057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.743	1	25.743	25.243	26.243	0								0	0	0	1.7419	1	9175	9175		19.997	0	1		+		37904	20651	26006	26098	38368	38368					0.053623514634637104
SRRSNSVIGPE	11	Unmodified	_SRRSNSVIGPE_					0	0	0			REV__ENST00000517550.1_1_7:27161590-27163258:+|nuORF	REV__ENST00000517550.1_1_7:27161590-27163258:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2159729003906	3	401.214309	1200.6211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.758	1	31.758	31.258	32.258	0								0	0	0	0.31865	1	11907	11907		50.791	15.613	1		+		37905	19920	26007	26099	38369	38369					0.028812282725766636
SRRSPPLL	8	Unmodified	_SRRSPPLL_					0	0	0			REV__ENST00000390548.6_1_14:106202774-106203071:-|nuORF	REV__ENST00000390548.6_1_14:106202774-106203071:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.28271484375	2	463.282526	924.550499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.138	1	17.138	16.638	17.638	0								0	0	0	1.7419	1	4210	4210		45.952	3.5558	1		+		37906	18810	26008	26100	38370	38370					0.0852059974556596
SRSASGSAER	10	Unmodified	_SRSASGSAER_					0	0	0			REV__CNOT11|p.A26S|1|0.59|ENSG00000158435|chr2:101253040-101253040|G/T|missense_variant	REV__CNOT11|p.A26S|1|0.59|ENSG00000158435|chr2:101253040-101253040|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2464599609375	2	504.246869	1006.47918	-0.056799	-2.8641E-05	-0.73411	-0.00037017	-0.79091	-0.00039881	504.2465569568053	21.306	0.18781	21.306	21.204	21.392	0					9	4	3	0	0	0	0.59277	1	6762	6762		35.152	1.6364	1	604660	+		37907	12532	26009	26101	38371	38371					-0.023795647497536265
SRSFCIGIFN	10	Unmodified	_SRSFCIGIFN_					0	0	0			REV__ENST00000485912.1_1_3:183960304-183960812:-|nuORF	REV__ENST00000485912.1_1_3:183960304-183960812:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.2860107421875	2	572.284408	1142.55426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.358	1	28.358	27.858	28.858	0								0	0	0	0.4201	1	8850	8850		18.262	0	1		+		37908	17578	26010	26102	38372	38372					-0.011310985428735876
SRSLARRK	8	Unmodified	_SRSLARRK_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.3055114746094	2	487.304324	972.594095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.609	1	26.609	26.109	27.109	0								0	0	0	1.7419	1	8388	8388		32.812	2.4947	1		+		37909	13166	26011	26103	38373	38373					0.10670209242709916
SRSPPPPA	8	Unmodified	_SRSPPPPA_					0	0	0			REV__ENSG00000226490|ENST00000643770|C8orf90	REV__ENSG00000226490|ENST00000643770|C8orf90	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.7193908691406	2	404.719227	807.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.694	1	24.694	24.194	25.194	0								0	0	0	1.7419	1	7326	7326		25.45	0	1		+		37910	17631	26012	26104	38374	38374					0.012486735204220167
SRSQEVQK	8	Unmodified	_SRSQEVQK_					0	0	0			REV__nc|ENSG00000292372|Q9NQA3|WASH6P	REV__nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2559509277344	2	481.256705	960.498858	-2.9227	-0.0014066	1.8762	0.00090293	-1.0466	-0.00050367	481.257557411357	11.66	0.082481	11.66	11.581	11.663	0					5	3	2	0	0	0	0.37378	1	2217	2217		73.975	2.679	1	121270	+		37911	21260	26013	26105	38375	38375					0.01702811261009174
SRSQSKSR	8	Unmodified	_SRSQSKSR_					0	0	0		ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF;ENSG00000163660|ENST00000295926|CCNL1;ENST00000476744.5_1_3:156866032-156867533:-|nuORF	ENST00000470121.5_1_3:156866032-156869342:-|nuORF	ENST00000470121.5_1_3:156866032-156869342:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2525329589844	2	468.254497	934.494441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.048	1	15.048	14.548	15.548	0								0	0	0	1.7419	1	4036	4036		64.207	4.089	1				37912	5590	26014	26106	38376	38376					0.02457346838104968
SRSRLSLPP	9	Unmodified	_SRSRLSLPP_					0	0	0		ARHGAP30|p.R1071G|1|0.43|ENSG00000186517|chr1:161047810-161047810|T/C|missense_variant;nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;nc|ENSG00000186517|Q7Z6I6-3|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30	ARHGAP30|p.R1071G|1|0.43|ENSG00000186517|chr1:161047810-161047810|T/C|missense_variant	ARHGAP30|p.R1071G|1|0.43|ENSG00000186517|chr1:161047810-161047810|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.2015686035156	3	338.201452	1011.58253	0.66434	0.00022468	-0.1559	-5.2725E-05	0.50844	0.00017196	338.20140934992736	14.696	0.092329	14.696	14.655	14.747	0					4	2	2	0	0	0	0.5879	1	3649	3649		23.523	9.3856	1	181040			37913	207	26015	26107	38377	38377					0.0771996742871579
SRSRQPSPAI	10	Unmodified	_SRSRQPSPAI_					0	0	0			REV__EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	REV__EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8049926757812	2	549.804354	1097.59415	1.7182	0.00094467	-0.65956	-0.00036263	1.0586	0.00058204	549.8039231964415	24.899	0.26167	24.899	24.794	25.056	0					8	5	2	0	0	0	0.52275	1	8784	8784		42.864	4.0581	1	916880	+		37914	12781	26016	26108	38378	38378					0.049261644520584014
SRSRSRNK	8	Unmodified	_SRSRSRNK_					0	0	0			REV__ENST00000487773.1_1_2:38972277-38975875:-|nuORF	REV__ENST00000487773.1_1_2:38972277-38975875:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.78192138671875	2	495.781213	989.547873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.478	1	13.478	12.978	13.978	0								0	0	0	1.7419	1	3078	3078		51.335	1.8939	1		+		37915	19164	26017	26109	38379	38379					0.05268144340618619
SRSSSLLLSIM	11	Oxidation (M)	_SRSSSLLLSIM(Oxidation (M))_		SRSSSLLLSIM(1)		SRSSSLLLSIM(50)	0	0	1			REV__RIT2|p.K198Qfs*60|1|0.4|ENSG00000152214|chr18:42743555-42743559|TTCTC/-|frameshift_variant	REV__RIT2|p.K198Qfs*60|1|0.4|ENSG00000152214|chr18:42743555-42743559|TTCTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8289184570312	2	605.329013	1208.64347	0.417	0.00025242	-1.9969	-0.0012088	-1.5799	-0.00095635	605.8290241064307	24.61	0.11656	24.61	24.528	24.645	0					4	2	2	0	0	0	0.42746	1	8634	8634		49.536	9.4779	1	117820	+		37916	21468	26018	26110	38380	38380		776			0.04749691625988817
SRSVLFLSV	9	Unmodified	_SRSVLFLSV_					0	0	0			REV__ENST00000301764.11_1_11:61100418-61100496:-|nuORF	REV__ENST00000301764.11_1_11:61100418-61100496:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.904	1	39.904	39.404	40.404	0								0	0	0	0.35899	1	12931	12931		17.468	0	1		+		37917	18208	26019	26111	38381	38381					0.07810333339944009
SRSVPKLED	9	Unmodified	_SRSVPKLED_					0	0	0			REV__MAN1B1|p.L339Sfs*2|3|0.33|ENSG00000177239|chr9:137101096-137101096|G/-|frameshift_variant	REV__MAN1B1|p.L339Sfs*2|3|0.33|ENSG00000177239|chr9:137101096-137101096|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7818603515625	2	515.780013	1029.54547	3.2637	0.0016833	0.9575	0.00049386	4.2212	0.0021772	515.7803704933273	36.209	0.51311	36.209	35.898	36.411	0					25	10	4	0	0	0	0.13267	1	14058	14058		71.877	0.58177	1	5374900	+		37918	16690	26020	26112	38382	38382					0.03188251092296923
SRTATVSYN	9	Unmodified	_SRTATVSYN_					0	0	0			REV__nc|ENSG00000115602|Q01638-4|IL1RL1	REV__nc|ENSG00000115602|Q01638-4|IL1RL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7503967285156	2	499.748713	997.482873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.408	1	31.408	30.908	31.908	0								0	0	0	0.31838	1	11739	11739		31.53	0	1		+		37919	14119	26021	26113	38383	38383					-0.015968949759098905
SRTKLITET	9	Unmodified	_SRTKLITET_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.2066650390625	3	350.204751	1047.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.235	1	50.235	49.735	50.735	0								0	0	0	0.35899	1	19840	19840		17.468	1.4612	1		+		37920	14584	26022	26114	38384	38384					0.07053110643414584
SRTPPQSAS	9	Unmodified	_SRTPPQSAS_					0	0	0			REV__ENST00000576250.5_1_16:3109019-3109328:-|nuORF	REV__ENST00000576250.5_1_16:3109019-3109328:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7366943359375	2	465.735606	929.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.354	1	33.354	32.854	33.854	0								0	0	0	0.3119	1	10837	10837		32.812	2.3088	1		+		37921	20417	26023	26115	38385	38385					-0.010891641473790514
SRTRDGRGP	9	Unmodified	_SRTRDGRGP_					0	0	0			REV__nc|ENSG00000065457|Q9BUB4-2|ADAT1	REV__nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2666015625	2	501.265396	1000.51624	2.9237	0.0014655	-0.078244	-3.9221E-05	2.8454	0.0014263	501.2652261113818	19.466	0.56037	19.466	19.014	19.574	0					36	11	4	0	0	0	0.16002	1	6010	6010		66.429	66.429	1	1552500	+		37922	12080	26024	26116	38386	38386					0.016001515866605587
SRTRVRELQ	9	Unmodified	_SRTRVRELQ_					0	0	0		ENSG00000180667|ENST00000315927|YOD1;nc|ENSG00000180667|Q5VVQ6-2|YOD1	ENSG00000180667|ENST00000315927|YOD1	ENSG00000180667|ENST00000315927|YOD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.8320922851562	2	572.830903	1143.64725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.5	1	32.5	32	33	0								0	0	0	0.1568	1	10847	10847		51.193	1.6567	1				37923	6813	26025	26117	38387	38387					0.08117542234708708
SRTWSPSP	8	Unmodified	_SRTWSPSP_					0	0	0			REV__nc|ENSG00000243660|B1APH4|ZNF487	REV__nc|ENSG00000243660|B1APH4|ZNF487	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2288513183594	2	459.227417	916.44028	2.5197	0.0011571	0.39191	0.00017998	2.9117	0.0013371	459.2276884283024	13.283	0.2036	13.283	13.176	13.38	0					9	4	3	0	0	0	0.41952	1	3053	3053		68.485	2.0554	1	1485900	+		37924	21227	26026	26118	38388	38388					-0.021282453134745083
SRVHVCLY	8	Unmodified	_SRVHVCLY_					0	0	0		ENSG00000154997|ENST00000388975|SEPTIN14	ENSG00000154997|ENST00000388975|SEPTIN14	ENSG00000154997|ENST00000388975|SEPTIN14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.75897216796875	2	488.755287	975.496021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.365	1	35.365	34.865	35.865	0								0	0	0	1.7419	1	11963	11963		50.025	18.07	1				37925	5111	26027	26119	38389	38389					0.00729264602477997
SRVKGSVIK	9	Unmodified	_SRVKGSVIK_					0	0	0			REV__ENST00000587533.1_1_19:14208073-14208361:-|nuORF	REV__ENST00000587533.1_1_19:14208073-14208361:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.310302734375	2	487.311284	972.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.4	1	47.4	46.9	47.9	0								0	0	0	0.36266	1	17395	17395		21.96	2.5999	1		+		37926	20107	26028	26120	38390	38390					0.12061441951152574
SRVLSGASQK	10	Unmodified	_SRVLSGASQK_					0	0	0		ENST00000492364.1_1_X:19362065-19369554:+|nuORF;nc|ENSG00000131828|P08559-3|PDHA1;ENSG00000131828|ENST00000422285|PDHA1;nc|ENSG00000131828|P08559-2|PDHA1;nc|ENSG00000131828|P08559-4|PDHA1	ENST00000492364.1_1_X:19362065-19369554:+|nuORF	ENST00000492364.1_1_X:19362065-19369554:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7933349609375	2	516.793455	1031.57236	1.5394	0.00079555	-1.207	-0.00062379	0.33235	0.00017176	516.7928536844616	11.834	0.075401	11.834	11.767	11.842	0					8	3	3	0	0	0	0.46128	1	2355	2355		49.536	0.094497	1	801960			37927	3743	26029	26121	38391	38391					0.057833597034687045
SRVSLVLLV	9	Unmodified	_SRVSLVLLV_					0	0	0		COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000225964.9_1_17:48268227-48270392:-|nuORF	COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant	COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.21826171875	3	329.218332	984.633166	-0.6677	-0.00021982	0.43022	0.00014164	-0.23748	-7.8182E-05	329.2184958244357	33.541	0.60566	33.541	33.461	34.067	0					62	23	4	0	0	0	0.61124	1	11455	11455		15.642	6.4589	1	8420900			37928	599	26030	26122	38392	38392					0.14023496753702602
SRVSSDIR	8	Unmodified	_SRVSSDIR_					0	0	0		ENST00000483634.1_1_6:24403304-24412499:+|nuORF;nc|ENSG00000124532|Q9HD23-3|MRS2	ENST00000483634.1_1_6:24403304-24412499:+|nuORF	ENST00000483634.1_1_6:24403304-24412499:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2500305175781	2	460.251423	918.488293	-1.1358	-0.00052276	-3.375	-0.0015533	-4.5108	-0.0020761	460.2500520208946	25.37	0.18029	25.37	25.27	25.45	0					9	6	2	0	0	0	0.51384	1	7888	7888		58.782	7.4465	1	113790			37929	9984	26031	26123	38393	38393					0.025788286065676402
SRVTIELL	8	Unmodified	_SRVTIELL_					0	0	0			REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.28375244140625	2	465.784567	929.554582	2.6249	0.0012226	-4.4037	-0.0020512	-1.7789	-0.00082856	465.7832142149639	41.392	0.42756	41.392	41.091	41.518	0					21	10	3	0	0	0	0.64144	1	16412	16412		42.396	5.237	1	183320	+		37930	20906	26032	26124	38394	38394					0.08698644448622872
SRVVLSTSTQ	10	Unmodified	_SRVVLSTSTQ_					0	0	0		nc|ENSG00000176973|Q8N5H3-2|FAM89B	nc|ENSG00000176973|Q8N5H3-2|FAM89B	nc|ENSG00000176973|Q8N5H3-2|FAM89B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7982788085938	2	539.29857	1076.58259	2.0745	0.0011188	-1.1591	-0.00062513	0.91534	0.00049364	539.2981995950119	27.647	0.87103	27.647	27.238	28.109	0					51	17	5	0	0	0	0.56099	1	9961	9961		27.047	0	1	1171600			37931	11659	26033	26125	38395	38395					0.047359226380422115
SRYDLLIK	8	Unmodified	_SRYDLLIK_					0	0	0		RYR1|p.G1978D|1|0.11|ENSG00000196218|chr19:38490194-38490194|G/A|missense_variant	RYR1|p.G1978D|1|0.11|ENSG00000196218|chr19:38490194-38490194|G/A|missense_variant	RYR1|p.G1978D|1|0.11|ENSG00000196218|chr19:38490194-38490194|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2979736328125	2	504.297842	1006.58113	0.77045	0.00038854	-0.27745	-0.00013992	0.49301	0.00024862	504.29767206599877	29.25	2.1723	29.25	28.165	30.337	0					92	54	2	0	0	0	0.63077	1	10439	10439		44.117	0	1	203210			37932	22370	26034	26126	38396	38396					0.07810333339944009
SRYDVRLR	8	Unmodified	_SRYDVRLR_					0	0	0		GABRQ|p.Y90Cfs*5|1|0.18|ENSG00000268089|chrX:152645556-152645557|TA/-|frameshift_variant;ENSG00000268089|ENST00000598523|GABRQ	GABRQ|p.Y90Cfs*5|1|0.18|ENSG00000268089|chrX:152645556-152645557|TA/-|frameshift_variant	GABRQ|p.Y90Cfs*5|1|0.18|ENSG00000268089|chrX:152645556-152645557|TA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8036499023438	2	532.801614	1063.58868	3.403	0.0018131	1.5926	0.00084856	4.9957	0.0026617	532.8020826767299	40.027	0.36546	40.027	39.768	40.134	0					13	8	2	0	0	0	0.64144	1	15859	15859		42.396	1.618	1	200680			37933	8079	26035	26127	38397	38397					0.059424856602163345
SRYFYCKI	8	Unmodified	_SRYFYCKI_					0	0	0		ENST00000469154.5_1_7:150936191-150937662:-|nuORF;ENST00000470588.1_1_7:150936191-150937494:-|nuORF;nc|ENSG00000082014|Q6STE5-2|SMARCD3;ENSG00000082014|ENST00000262188|SMARCD3	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7692260742188	2	540.27077	1078.52699	3.4795	0.0018799	-2.5486	-0.0013769	0.93087	0.00050292	540.2706275203095	31.298	0.65833	31.298	31.093	31.751	0					36	13	5	0	0	0	0.46905	1	11672	11672		63.306	1.1989	1	3354900			37934	1668	26036	26128	38398	38398					-0.009135820832852914
SRYQPLQY	8	Unmodified	_SRYQPLQY_					0	0	0		nc|ENSG00000136709|Q9C0J8-2|WDR33	nc|ENSG00000136709|Q9C0J8-2|WDR33	nc|ENSG00000136709|Q9C0J8-2|WDR33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7696533203125	2	527.769448	1053.52434	-1.1923	-0.00062928	1.2481	0.00065873	0.05581	2.9455E-05	527.7699577154185	35.226	0.16088	35.226	35.141	35.302	0					11	5	3	0	0	0	0.65276	1	12534	12534		40.573	2.7611	1	82879			37935	11541	26037	26129	38399	38399					-0.00027714216571439465
SRYTSSLSL	9	Unmodified	_SRYTSSLSL_					0	0	0			REV__ENSG00000047597|ENST00000378616|XK	REV__ENSG00000047597|ENST00000378616|XK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2665100097656	2	507.266739	1012.51892	-0.37335	-0.00018939	0.17969	9.1149E-05	-0.19367	-9.8241E-05	507.26666715595076	36.706	0.27928	36.706	36.583	36.862	0					20	8	3	0	0	0	0.12239	1	14316	14316		74.255	18.751	1	552490	+		37936	13013	26038	26130	38400	38400					0.013165622009751132
SSAAHLPHSL	10	Unmodified	_SSAAHLPHSL_					0	0	0			REV__KRTAP10-2|p.V108Cfs*238|1|0.22|ENSG00000205445|chr21:44551137-44551137|C/-|frameshift_variant	REV__KRTAP10-2|p.V108Cfs*238|1|0.22|ENSG00000205445|chr21:44551137-44551137|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2671203613281	2	510.267073	1018.51959	-1.8036	-0.00092029	1.1771	0.00060066	-0.6264	-0.00031963	510.26775405928936	22.988	0.22364	22.988	22.899	23.123	0					10	5	3	0	0	0	0.46215	1	6930	6930		49.442	3.4693	1	201110	+		37937	20799	26039	26131	38401	38401					0.011074016406610099
SSAARLARR	9	Unmodified	_SSAARLARR_					0	0	0		ENST00000355628.9_1_3:56716933-56717212:-|nuORF	ENST00000355628.9_1_3:56716933-56717212:-|nuORF	ENST00000355628.9_1_3:56716933-56717212:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.86572265625	3	329.865063	986.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.847	1	20.847	20.347	21.347	0								0	0	0	0.29774	1	6534	6534		28.081	0	1				37938	8799	26040	26132	38402	38402					0.07953618863041356
SSAASSLKK	9	Unmodified	_SSAASSLKK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.7504577636719	2	439.750724	877.486896	-0.28345	-0.00012465	-0.61006	-0.00026828	-0.89352	-0.00039292	439.75046840228316	13.8	0.10424	13.8	13.745	13.85	0					6	4	2	0	0	0	0.028876	1	2752	2752		110.12	48.012	1	212650			37939	1238;220	26041	26133	38403	38403					0.04325194517809905
SSAASSLKK	9	Unmodified	_SSAASSLKK_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.75048828125	2	439.750724	877.486896	-0.36364	-0.00015991	-0.03587	-1.5774E-05	-0.39951	-0.00017569	439.75071063381296	14.102	0.21524	14.102	14.046	14.262	0					11	5	3	0	0	0	0.0097668	1	3366	3366		141.52	56.605	1	1929200			37940	1238;220	26041	26133	38404	38404					0.04325194517809905
SSAASVAPSL	10	Unmodified	_SSAASVAPSL_					0	0	0			REV__ENSG00000282881|ENST00000697682|TMEM275	REV__ENSG00000282881|ENST00000697682|TMEM275	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2345886230469	2	445.234907	888.455261	-0.18714	-8.3322E-05	-0.5696	-0.0002536	-0.75674	-0.00033693	445.2346587320972	21.432	0.3672	21.432	21.225	21.592	0					15	7	3	0	0	0	0.47859	1	7074	7074		47.657	3.2801	1	520570	+		37941	17850	26042	26134	38405	38405					0.006572017638518446
SSAAVHRLK	9	Unmodified	_SSAAVHRLK_					0	0	0		CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant;ENSG00000183741|ENST00000407418|CBX6	CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant	CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7852478027344	2	484.785433	967.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.896	1	14.896	14.396	15.396	0								0	0	0	0.23445	1	3964	3964		45.972	10.354	1				37942	389	26043	26135	38406	38406					0.07123698257225897
SSAELSTS	8	Unmodified	_SSAELSTS_					0	0	0		ENST00000468370.5_1_14:30107689-30135322:-|nuORF;PRKD1|p.S448Vfs*28|1|0.08|ENSG00000184304|chr14:29632913-29632919|ATTTGCT/-|frameshift_variant;PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1	ENST00000468370.5_1_14:30107689-30135322:-|nuORF	ENST00000468370.5_1_14:30107689-30135322:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.1823425292969	2	391.18234	780.350128	-0.12595	-4.9269E-05	-0.21	-8.2148E-05	-0.33595	-0.00013142	391.18226788143744	17.299	0.86938	17.299	17.213	18.082	0					52	21	5	0	0	0	0.76283	1	4840	4840		25.45	0	1	16763000			37943	7005	26044	26136	38407	38407					-0.048833394325697554
SSAEVIAQARK	11	Unmodified	_SSAEVIAQARK_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.325927734375	2	580.325119	1158.63569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.983	1	19.983	19.483	20.483	0								0	0	0	0.17815	1	6407	6407		65.157	17.198	1				37944	1881	26045	26137	38408	38408					0.0627130042068984
SSAEYSVHK	9	Unmodified	_SSAEYSVHK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2;LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2436218261719	2	504.243264	1006.47197	-0.062246	-3.1387E-05	-0.31854	-0.00016062	-0.38079	-0.00019201	504.2432717571327	16.408	0.052729	16.408	16.358	16.411	0					6	2	3	0	0	0	0.016683	1	3720	3720		127.46	34.266	1	171940			37945	1299	26046	26138	38409	38409					-0.031002973501813358
SSAEYSVHK	9	Unmodified	_SSAEYSVHK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2;LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.24322509765625	2	504.243264	1006.47197	-0.057483	-2.8986E-05	-0.1978	-9.9739E-05	-0.25528	-0.00012872	504.24316951123245	16.657	0.097149	16.657	16.608	16.705	0					4	2	2	0	0	0	0.0049871	1	4567	4567		158.07	64.879	1	1018000			37946	1299	26046	26138	38410	38410					-0.031002973501813358
SSAEYSVHK	9	Unmodified	_SSAEYSVHK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2;LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.24346923828125	2	504.243264	1006.47197	-0.83341	-0.00042024	0.98293	0.00049564	0.14952	7.5396E-05	504.2438061191796	16.401	0.05901	16.401	16.346	16.405	0					6	2	3	0	0	0	0.013878	1	3918	3918		132.76	39.562	1	431910			37947	1299	26046	26138	38411	38411					-0.031002973501813358
SSAEYSVHK	9	Unmodified	_SSAEYSVHK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2;LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2434997558594	2	504.243264	1006.47197	1.0306	0.00051965	-1.2823	-0.00064661	-0.25178	-0.00012696	504.2426659381084	16.621	0.11485	16.621	16.515	16.63	0					8	2	4	0	0	0	3.2654E-05	1	4774	4774		200.16	98.556	1	2670400			37948	1299	26046	26138	38412	38412					-0.031002973501813358
SSAEYSVHK	9	Unmodified	_SSAEYSVHK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2;LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.24310302734375	2	504.243264	1006.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.452	1	16.452	15.952	16.952	0								0	0	0	0.012451	1	3903	3903		162.25	63.623	1				37949	1299	26046	26138	38413	38413					-0.031002973501813358
SSAGIKRPQ	9	Unmodified	_SSAGIKRPQ_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2693176269531	2	472.269616	942.524678	-0.58462	-0.0002761	0.006003	2.835E-06	-0.57861	-0.00027326	472.26958984183835	12.925	0.32523	12.925	12.826	13.151	0					23	9	4	0	0	0	0.19605	1	2828	2828		62.107	6.6032	1	2525600	+		37950	15630	26047	26139	38414	38414					0.051117055032818826
SSAGPGLLK	9	Unmodified	_SSAGPGLLK_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.2430114746094	2	415.242535	828.470518	0.56155	0.00023318	-0.83133	-0.00034521	-0.26978	-0.00011202	415.242512929858	25.326	0.22025	25.326	25.152	25.372	0					9	6	2	0	0	0	0.22377	1	7599	7599		58.782	7.4465	1	46944		+	37951	636	26048	26140	38415	38415					0.04942113351705757
SSAGPGLLK	9	Unmodified	_SSAGPGLLK_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.242431640625	2	415.242535	828.470518	1.0408	0.00043217	-1.0078	-0.00041847	0.033001	1.3703E-05	415.24199810943963	25.625	0.30233	25.625	25.454	25.756	0					20	7	4	0	0	0	0.14603	1	8774	8774		68.787	0.30212	1	414640		+	37952	636	26048	26140	38416	38416					0.04942113351705757
SSAGPGLLK	9	Unmodified	_SSAGPGLLK_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.242431640625	2	415.242535	828.470518	0.064601	2.6825E-05	0.35037	0.00014549	0.41497	0.00017231	415.242659782868	25.561	0.31145	25.561	25.409	25.721	0					9	6	2	0	0	0	0.25716	1	9101	9101		54.776	8.8244	1	78390		+	37953	636	26048	26140	38417	38417					0.04942113351705757
SSAGPGLLK	9	Unmodified	_SSAGPGLLK_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.24224853515625	2	415.242535	828.470518	-0.36464	-0.00015142	0.044196	1.8352E-05	-0.32045	-0.00013306	415.2426058086066	25.522	0.26956	25.522	25.364	25.633	0					9	5	2	0	0	0	0.055856	1	8958	8958		93.195	16.349	1	421260		+	37954	636	26048	26140	38418	38418					0.04942113351705757
SSAGPGLLK	9	Unmodified	_SSAGPGLLK_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.2424011230469	2	415.242535	828.470518	1.0252	0.00042571	-1.2113	-0.00050298	-0.18607	-7.7266E-05	415.2419581953633	25.509	0.32017	25.509	25.347	25.667	0					14	6	3	0	0	0	0.047412	1	8954	8954		96.19	13.885	1	486030		+	37955	636	26048	26140	38419	38419					0.04942113351705757
SSAGTSQK	8	Unmodified	_SSAGTSQK_					0	0	0		nc|ENSG00000075651|Q13393-3|PLD1	nc|ENSG00000075651|Q13393-3|PLD1	nc|ENSG00000075651|Q13393-3|PLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.1907958984375	2	383.1905	764.366446	0.34947	0.00013392	0.13916	5.3323E-05	0.48863	0.00018724	383.19056721548867	11.034	0.085016	11.034	10.986	11.071	0					6	3	2	0	0	0	0.78216	1	2179	2179		8.8223	0	1	79350			37956	11438	26049	26141	38420	38420					-0.02516213475803397
SSAGVQIVP	9	Unmodified	_SSAGVQIVP_					0	0	0			REV__ENST00000564746.1_1_16:19078986-19083491:+|nuORF	REV__ENST00000564746.1_1_16:19078986-19083491:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.239990234375	2	429.239993	856.465432	-0.43464	-0.00018657	0.01716	7.3657E-06	-0.41748	-0.0001792	429.23999304493515	19.693	0.96838	19.693	19.442	20.41	0					53	19	4	0	0	0	0.14603	1	6315	6315		68.787	1.2932	1	2208300	+		37957	20327	26050	26142	38421	38421					0.03145809489080875
SSAHSAAPL	9	Unmodified	_SSAHSAAPL_					0	0	0			REV__ENST00000409016.8_1_2:99206031-99206208:+|nuORF	REV__ENST00000409016.8_1_2:99206031-99206208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.7138671875	2	420.714142	839.413731	1.049	0.00044133	-1.0025	-0.00042175	0.046556	1.9587E-05	420.71354710843036	14.506	0.09423	14.506	14.456	14.55	0					4	2	2	0	0	0	0.49003	1	3555	3555		33.516	1.5607	1	72621	+		37958	18988	26051	26143	38422	38422					-0.012399342048070139
SSAINHLK	8	Unmodified	_SSAINHLK_					0	0	0		ENST00000431308.5_1_17:28935531-28937913:+|nuORF	ENST00000431308.5_1_17:28935531-28937913:+|nuORF	ENST00000431308.5_1_17:28935531-28937913:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.2454833984375	2	435.245609	868.476666	0.2171	9.4493E-05	-0.67393	-0.00029333	-0.45683	-0.00019883	435.24541700703855	16.506	0.10181	16.506	16.447	16.549	0					5	3	2	0	0	0	0.41701	1	3778	3778		68.787	2.9837	1	148970			37959	9500	26052	26144	38423	38423					0.037166315832337204
SSAKIKIKK	9	Unmodified	_SSAKIKIKK_					0	0	0		ENST00000375078.3_1_1:20809917-20810088:-|nuORF	ENST00000375078.3_1_1:20809917-20810088:-|nuORF	ENST00000375078.3_1_1:20809917-20810088:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.8938903808594	3	334.893848	1001.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.462	1	14.462	13.962	14.962	0								0	0	0	0.24544	1	3603	3603		44.377	6.5657	1				37960	9023	26053	26145	38424	38424					0.15895185645024412
SSAKLPQA	8	Unmodified	_SSAKLPQA_					0	0	0		ENST00000412797.1_1_1:25916693-25916837:+|nuORF	ENST00000412797.1_1_1:25916693-25916837:+|nuORF	ENST00000412797.1_1_1:25916693-25916837:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.22686767578125	2	401.226885	800.439217	0.059819	2.4001E-05	0.020225	8.1148E-06	0.080044	3.2116E-05	401.2267985929158	16.826	0.20102	16.826	16.729	16.93	0					7	4	2	0	0	0	0.43813	1	4879	4879		66.429	7.6473	1	78875			37961	9321	26054	26146	38425	38425					0.031015403176070322
SSAKPGPAL	9	Unmodified	_SSAKPGPAL_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.23468017578125	2	414.23471	826.454868	0.58653	0.00024296	-1.2301	-0.00050955	-0.64357	-0.00026659	414.234437735865	21.32	0.12703	21.32	21.235	21.362	0					5	3	2	0	0	0	0.35045	1	5865	5865		45.952	3.4775	1	149550			37962	7128	26055	26147	38426	38426					0.03469826834657397
SSAKPGPAL	9	Unmodified	_SSAKPGPAL_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.2345886230469	2	414.23471	826.454868	1.0324	0.00042765	-1.2866	-0.00053294	-0.25418	-0.00010529	414.23416109302576	21.657	0.22798	21.657	21.564	21.792	0					11	5	3	0	0	0	0.30951	1	6927	6927		49.442	1.5259	1	695020			37963	7128	26055	26147	38427	38427					0.03469826834657397
SSAKPGPAL	9	Unmodified	_SSAKPGPAL_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2344665527344	2	414.23471	826.454868	0.06275	2.5993E-05	-0.65284	-0.00027043	-0.5901	-0.00024444	414.2344474808089	21.584	0.16753	21.584	21.475	21.642	0					8	3	3	0	0	0	0.16002	1	7190	7190		66.429	0.6261	1	425690			37964	7128	26055	26147	38428	38428					0.03469826834657397
SSAKPGPAL	9	Unmodified	_SSAKPGPAL_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2352600097656	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.436	1	21.436	20.936	21.936	0								0	0	0	0.14517	1	6214	6214		60.972	0	1				37965	7128	26055	26147	38429	38429					0.03469826834657397
SSAKPGPAL	9	Unmodified	_SSAKPGPAL_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.2347717285156	2	414.23471	826.454868	-0.3883	-0.00016085	0.55727	0.00023084	0.16897	6.9993E-05	414.23481193376205	21.548	0.2159	21.548	21.437	21.653	0					9	4	3	0	0	0	0.13267	1	7045	7045		71.877	3.3928	1	449740			37966	7128	26055	26147	38430	38430					0.03469826834657397
SSAKPVIKK	9	Unmodified	_SSAKPVIKK_					0	0	0		SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6;SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.3083190917969	2	479.30821	956.601866	-0.31329	-0.00015016	0.70765	0.00033918	0.39436	0.00018902	479.3084893834727	13.611	0.074806	13.611	13.582	13.657	0					9	4	3	0	0	0	0.020674	1	2763	2763		120.87	12.781	1	335610			37967	2756	26056	26148	38431	38431					0.12182923719615246
SSAKSTWQTL	10	Unmodified	_SSAKSTWQTL_					0	0	0			REV__ENST00000569795.5_1_15:72558271-72559838:-|nuORF	REV__ENST00000569795.5_1_15:72558271-72559838:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7842407226562	2	554.785296	1107.55604	1.3098	0.00072666	-0.79048	-0.00043855	0.51933	0.00028812	554.7848254900109	27.638	0.41124	27.638	27.523	27.934	0					41	13	5	0	0	0	0.56063	1	8662	8662		38.754	4.5811	1	8160100	+		37968	20369	26057	26149	38432	38432					0.006562337467130419
SSALHSLLK	9	Unmodified	_SSALHSLLK_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2818298339844	2	478.282192	954.549831	-1.4573	-0.00069698	1.1845	0.00056654	-0.27273	-0.00013044	478.282824928218	27.148	0.15457	27.148	27.075	27.229	0					8	5	2	0	0	0	0.085655	1	8619	8619		82.75	3.2995	1	86626			37969	5746	26058	26150	38433	38433					0.07073760305866017
SSALHSLLK	9	Unmodified	_SSALHSLLK_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2820129394531	2	478.282192	954.549831	0.65208	0.00031188	-1.2225	-0.0005847	-0.57041	-0.00027282	478.2816125324867	27.409	1.054	27.409	26.761	27.815	0					29	21	3	0	0	0	0.14578	1	9941	9941		68.846	12.125	1	899610			37970	5746	26058	26150	38434	38434					0.07073760305866017
SSALHSLLK	9	Unmodified	_SSALHSLLK_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2817687988281	2	478.282192	954.549831	0.85897	0.00041083	-1.461	-0.00069878	-0.60204	-0.00028795	478.28143757595706	27.349	0.32193	27.349	27.238	27.56	0					9	6	2	0	0	0	0.020674	1	9791	9791		120.87	33.114	1	907910			37971	5746	26058	26150	38435	38435					0.07073760305866017
SSALLNKH	8	Unmodified	_SSALLNKH_					0	0	0			REV__nc|ENSG00000143207|Q8NHY2-3|COP1	REV__nc|ENSG00000143207|Q8NHY2-3|COP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.2456359863281	2	435.245609	868.476666	-0.27235	-0.00011854	0.18956	8.2505E-05	-0.082792	-3.6035E-05	435.2457150907429	16.501	0.10087	16.501	16.437	16.538	0					8	3	3	0	0	0	0.27512	1	3769	3769		90.777	3.0224	1	263240	+		37972	15177	26059	26151	38436	38436					0.037166315832337204
SSALLNKH	8	Unmodified	_SSALLNKH_					0	0	0			REV__nc|ENSG00000143207|Q8NHY2-3|COP1	REV__nc|ENSG00000143207|Q8NHY2-3|COP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.24566650390625	2	435.245609	868.476666	-0.84686	-0.00036859	0.81262	0.00035369	-0.034233	-1.49E-05	435.2459515368788	16.512	0.13029	16.512	16.43	16.56	0					9	3	3	0	0	0	0.26922	1	3972	3972		143.02	23.463	1	998210	+		37973	15177	26059	26151	38437	38437					0.037166315832337204
SSALLNKH	8	Unmodified	_SSALLNKH_					0	0	0			REV__nc|ENSG00000143207|Q8NHY2-3|COP1	REV__nc|ENSG00000143207|Q8NHY2-3|COP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.245361328125	2	435.245609	868.476666	-0.84209	-0.00036652	0.60385	0.00026282	-0.23824	-0.00010369	435.2458815984294	17.875	0.13194	17.875	17.792	17.924	0					5	3	2	0	0	0	0.27512	1	4562	4562		90.777	3.0224	1	272470	+		37974	15177	26059	26151	38438	38438					0.037166315832337204
SSALLNKH	8	Unmodified	_SSALLNKH_					0	0	0			REV__nc|ENSG00000143207|Q8NHY2-3|COP1	REV__nc|ENSG00000143207|Q8NHY2-3|COP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2450866699219	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.974	1	17.974	17.474	18.474	0								0	0	0	1.7419	1	4597	4597		38.806	3.1879	1		+		37975	15177	26059	26151	38439	38439					0.037166315832337204
SSALLNKH	8	Unmodified	_SSALLNKH_					0	0	0			REV__nc|ENSG00000143207|Q8NHY2-3|COP1	REV__nc|ENSG00000143207|Q8NHY2-3|COP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.24530029296875	2	435.245609	868.476666	0.79549	0.00034624	-1.5782	-0.00068691	-0.78273	-0.00034068	435.2449553174335	16.738	0.35409	16.738	16.634	16.988	0					20	7	5	0	0	0	0.26922	1	4706	4706		143.02	27.56	1	10005000	+		37976	15177	26059	26151	38440	38440					0.037166315832337204
SSALNTHK	8	Unmodified	_SSALNTHK_					0	0	0		ZNF93|p.R221I|1|0.35|ENSG00000184635|chr19:19933617-19933617|G/T|missense_variant;ENSG00000152926|ENST00000282869|ZNF117;nc|ENSG00000184635|P35789-3|ZNF93;nc|ENSG00000184635|P35789-2|ZNF93;ENSG00000184635|ENST00000343769|ZNF93	ZNF93|p.R221I|1|0.35|ENSG00000184635|chr19:19933617-19933617|G/T|missense_variant	ZNF93|p.R221I|1|0.35|ENSG00000184635|chr19:19933617-19933617|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.22735595703125	2	429.227417	856.44028	0.8205	0.00035218	-1.349	-0.00057901	-0.52846	-0.00022683	429.2268827282202	13.23	0.12473	13.23	13.151	13.276	0					5	3	2	0	0	0	0.28427	1	2959	2959		87.754	5.4493	1	188080			37977	5026	26060	26152	38441	38441					0.0063175468651479605
SSALSFSRSK	10	Unmodified	_SSALSFSRSK_					0	0	0			REV__ENSG00000144909|ENST00000296220|OSBPL11	REV__ENSG00000144909|ENST00000296220|OSBPL11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.19268798828125	3	357.192734	1068.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.131	1	12.131	11.631	12.631	0								0	0	0	0.36846	1	2655	2655		40.058	3.6114	1		+		37978	15251	26061	26153	38442	38442					0.024836534665837462
SSALTIHKII	10	Unmodified	_SSALTIHKII_					0	0	0		ZNF479|p.R401I|1|0.22|ENSG00000185177|chr7:57120213-57120213|C/A|missense_variant	ZNF479|p.R401I|1|0.22|ENSG00000185177|chr7:57120213-57120213|C/A|missense_variant	ZNF479|p.R401I|1|0.22|ENSG00000185177|chr7:57120213-57120213|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.83203125	2	541.832049	1081.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.462	1	17.462	16.962	17.962	0								0	0	0	0.38093	1	4931	4931		39.253	8.7492	1				37979	23158	26062	26154	38443	38443					0.1119857791979939
SSALTNHK	8	Unmodified	_SSALTNHK_					0	0	0		ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant;ENSG00000197013|ENST00000358491|ZNF429;ZNF479|p.R289I|1|0.68|ENSG00000185177|chr7:57120549-57120549|C/A|missense_variant;ZNF479|p.K332Afs*2|1|0.05|ENSG00000185177|chr7:57120421-57120422|-/AGGC|frameshift_variant;ENSG00000185177|ENST00000319636|ZNF479	ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant	ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.227294921875	2	429.227417	856.44028	-0.91445	-0.00039251	0.33695	0.00014463	-0.5775	-0.00024788	429.22769893295344	12.963	0.081122	12.963	12.92	13.001	0					5	3	2	0	0	0	0.23367	1	2622	2622		120.62	3.7174	1	108080			37980	7414	26063	26155	38444	38444					0.0063175468651479605
SSALTNHK	8	Unmodified	_SSALTNHK_					0	0	0		ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant;ENSG00000197013|ENST00000358491|ZNF429;ZNF479|p.R289I|1|0.68|ENSG00000185177|chr7:57120549-57120549|C/A|missense_variant;ZNF479|p.K332Afs*2|1|0.05|ENSG00000185177|chr7:57120421-57120422|-/AGGC|frameshift_variant;ENSG00000185177|ENST00000319636|ZNF479	ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant	ZNF429|p.H387Qfs*13|1|0.26|ENSG00000197013|chr19:21537213-21537214|AT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2269287109375	2	429.227417	856.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.931	1	12.931	12.431	13.431	0								0	0	0	1.7419	1	2552	2552		106.42	0	1				37981	7414	26063	26155	38445	38445					0.0063175468651479605
SSANIMKSKL	10	Unmodified	_SSANIMKSKL_					0	0	0			REV__ENST00000508046.1_1_5:68609200-68609404:-|nuORF	REV__ENST00000508046.1_1_5:68609200-68609404:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.798828125	2	539.799891	1077.58523	-1.4786	-0.00079814	-0.75841	-0.00040939	-2.237	-0.0012075	539.7995234266945	35.57	0.37074	35.57	35.488	35.858	0					34	14	3	0	0	0	0.48965	1	12671	12671		46.457	46.457	1	535200	+		37982	19849	26064	26156	38446	38446					0.049540547713377237
SSAPIIFATA	10	Unmodified	_SSAPIIFATA_					0	0	0			REV__nc|ENSG00000185513|Q9Y468|L3MBTL1	REV__nc|ENSG00000185513|Q9Y468|L3MBTL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	326.5136413574219	3	326.514925	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.828	1	12.828	12.328	13.328	0								0	0	0	0.3805	1	2516	2516		36.447	8.5645	1		+		37983	17031	26065	26157	38447	38447					0.03374651694662134
SSAPKSFTV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSAPKSFTV_					1	0	0		ENSG00000150893|ENST00000280481|FREM2;FREM2|p.V1156Gfs*14|1|0.4|ENSG00000150893|chr13:38690806-38690807|-/G|frameshift_variant;FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.E511K|1|0.23|ENSG00000150893|chr13:38688875-38688875|G/A|missense_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.747802734375	2	483.250557	964.486562	0.88044	0.00042547	-1.8719	-0.00090459	-0.99144	-0.00047911	483.2498675432071	41.64	1.2792	41.64	41.313	42.592	0					78	34	3	0	0	0	0.38666	1	16459	16459		42.864	7.246	1	554490			37984	4937	26066	26158	38448	38448					0.002897747979545784
SSAPPLTGK	9	Unmodified	_SSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2401428222656	2	429.239993	856.465432	1.0896	0.00046768	-0.81987	-0.00035192	0.26969	0.00011576	429.2396261991692	19.526	0.61819	19.526	19.31	19.928	0					39	18	3	0	0	0	0.12834	1	5013	5013		72.879	16.158	1	384300			37985	1972	26067	26159	38449	38449					0.03145809489092244
SSAPPLTGK	9	Unmodified	_SSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.23980712890625	2	429.239993	856.465432	-0.51815	-0.00022241	0.13463	5.7788E-05	-0.38352	-0.00016462	429.24004775769316	19.684	1.0155	19.684	19.43	20.445	0					63	20	4	0	0	0	0.04067	2	6249	6249;6418		98.582	39.8	1	5232700			37986	1972	26067	26159	38450;38451	38450					0.03145809489092244
SSAPPLTGK	9	Unmodified	_SSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2397155761719	2	429.239993	856.465432	0.18199	7.8116E-05	-0.16381	-7.0313E-05	0.018178	7.8029E-06	429.23992513610756	19.5	0.53682	19.5	19.369	19.906	0					21	12	2	0	0	0	0.16806	1	5285	5285		65.465	19.513	1	210320			37987	1972	26067	26159	38452	38452					0.03145809489092244
SSAPPLTGK	9	Unmodified	_SSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.G285Pfs*14|1|0.11|ENSG00000100105|chr22:31344749-31344750|CC/-|frameshift_variant	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2395935058594	2	429.239993	856.465432	-0.43464	-0.00018657	0.01716	7.3657E-06	-0.41748	-0.0001792	429.23999304493515	19.693	0.96838	19.693	19.442	20.41	0					53	19	4	0	0	0	0.095583	1	6121	6121		80.455	19.483	1	2208300			37988	1972	26067	26159	38453	38453					0.03145809489092244
SSAPQFIPLQ	10	Unmodified	_SSAPQFIPLQ_					0	0	0			REV__ENST00000494675.5_1_1:111492740-111495424:-|nuORF	REV__ENST00000494675.5_1_1:111492740-111495424:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.19683837890625	3	363.197596	1086.57096	-2.0552	-0.00074644	0.44939	0.00016322	-1.6058	-0.00058322	363.19791644191076	23.195	0.18738	23.195	23.064	23.251	0					7	4	2	0	0	0	0.64162	1	7052	7052		21.78	0	1	85234	+		37989	14321	26068	26160	38454	38454					0.031137256147076187
SSAPSAIRK	9	Unmodified	_SSAPSAIRK_					0	0	0		ENST00000155926.8_1_2:12857983-12858097:+|nuORF	ENST00000155926.8_1_2:12857983-12858097:+|nuORF	ENST00000155926.8_1_2:12857983-12858097:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7644348144531	2	458.764166	915.513779	0.17268	7.9221E-05	-0.051059	-2.3424E-05	0.12162	5.5797E-05	458.764083318086	13.882	0.2483	13.882	13.755	14.003	0					12	6	3	0	0	0	0.17854	1	3250	3250		64.207	0.901	1	439080			37990	8143	26069	26161	38455	38455					0.052643031289903774
SSAQKLVP	8	Unmodified	_SSAQKLVP_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.2421875	2	415.242535	828.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.429	1	25.429	24.929	25.929	0								0	0	0	1.7419	1	8084	8084		30.504	1.3541	1		+		37991	21108	26070	26162	38456	38456					0.04942113351705757
SSAQVSTVGQ	10	Unmodified	_SSAQVSTVGQ_					0	0	0		TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B;TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant;TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant;TNRC6B|p.N758Tfs*34|1|0.18|ENSG00000100354|chr22:40266498-40266498|A/-|frameshift_variant;TNRC6B|p.E751Rfs*41|1|0.08|ENSG00000100354|chr22:40266476-40266476|G/-|frameshift_variant;TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.24102783203125	2	482.240721	962.466889	0.047008	2.2669E-05	0.25881	0.00012481	0.30582	0.00014748	482.2409367344694	17.43	0.11689	17.43	17.361	17.478	0					6	4	2	0	0	0	0.27065	1	4158	4158		70.816	0	1	76515			37992	2012	26071	26163	38457	38457					-0.015846012127894937
SSAQVSTVGQ	10	Unmodified	_SSAQVSTVGQ_					0	0	0		TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B;TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant;TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant;TNRC6B|p.N758Tfs*34|1|0.18|ENSG00000100354|chr22:40266498-40266498|A/-|frameshift_variant;TNRC6B|p.E751Rfs*41|1|0.08|ENSG00000100354|chr22:40266476-40266476|G/-|frameshift_variant;TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2406311035156	2	482.240721	962.466889	-0.61613	-0.00029712	0.047553	2.2932E-05	-0.56857	-0.00027419	482.24082779254843	17.691	0.17033	17.691	17.58	17.751	0					5	3	2	0	0	0	0.18316	1	5161	5161		81.525	10.709	1	276580			37993	2012	26071	26163	38458	38458					-0.015846012127894937
SSAREAHLK	9	Unmodified	_SSAREAHLK_					0	0	0		ENSG00000139428|ENST00000545712|MMAB	ENSG00000139428|ENST00000545712|MMAB	ENSG00000139428|ENST00000545712|MMAB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7723388671875	2	499.772522	997.530492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.691	1	13.691	13.191	14.191	0								0	0	0	0.31838	1	3390	3390		31.53	8.4873	1				37994	4327	26072	26164	38459	38459					0.03162804014937137
SSAREAHLK	9	Unmodified	_SSAREAHLK_					0	0	0		ENSG00000139428|ENST00000545712|MMAB	ENSG00000139428|ENST00000545712|MMAB	ENSG00000139428|ENST00000545712|MMAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.77313232421875	2	499.772522	997.530492	-0.70149	-0.00035059	1.4956	0.00074748	0.79415	0.00039689	499.7734098760446	13.581	0.11341	13.581	13.524	13.638	0					4	2	2	0	0	0	0.13726	1	3197	3197		70.816	17.88	1	134010			37995	4327	26072	26164	38460	38460					0.03162804014937137
SSARPFDSV	9	Unmodified	_SSARPFDSV_					0	0	0			REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2367858886719	2	483.237981	964.461409	0.059516	2.876E-05	-2.2005	-0.0010634	-2.141	-0.0010346	483.2368209275218	22.591	0.17001	22.591	22.524	22.694	0					8	5	2	0	0	0	0.53083	1	6415	6415		29.15	3.5755	1	118350	+		37996	19992	26073	26165	38461	38461					-0.022242800046115008
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2879028320312	2	518.287671	1034.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.576	1	29.576	29.076	30.076	0								0	0	0	0.32536	1	9349	9349		48.602	21.554	1				37997	5738	26074	26166	38462	38462					0.044891178894431505
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2879028320312	2	518.287671	1034.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.886	1	29.886	29.386	30.386	0								0	0	0	0.10345	1	10720	10720		75.652	27.995	1				37998	5738	26074	26166	38463	38463					0.044891178894431505
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2868041992188	2	518.287671	1034.56079	0.05175	2.6822E-05	-0.31384	-0.00016266	-0.26209	-0.00013584	518.2872740125392	29.848	0.20993	29.848	29.762	29.972	0					9	5	2	0	0	0	0.14473	1	10710	10710		80.916	22.134	1	357370			37999	5738	26074	26166	38464	38464					0.044891178894431505
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.287841796875	2	518.287671	1034.56079	0.10516	5.4502E-05	0.8004	0.00041484	0.90556	0.00046934	518.2876412284053	29.6	0.14214	29.6	29.538	29.68	0					11	5	3	0	0	0	0.12878	2	9644	9644;9676		82.831	36.374	1	224470			38000	5738	26074	26166	38465;38466	38465					0.044891178894431505
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.28759765625	2	518.287671	1034.56079	1.5698	0.00081361	-0.86525	-0.00044845	0.70454	0.00036515	518.286807934953	29.86	0.26402	29.86	29.7	29.964	0					11	5	3	0	0	0	0.061126	1	11093	11093		99.788	51.828	1	1117100			38001	5738	26074	26166	38467	38467					0.044891178894431505
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2887573242188	2	518.287671	1034.56079	0.94471	0.00048963	0.3915	0.00020291	1.3362	0.00069254	518.2877561778125	29.619	0.12678	29.619	29.539	29.666	0					6	3	2	0	0	0	0.089609	1	9982	9982		92.239	49.375	1	126710			38002	5738	26074	26166	38468	38468					0.044891178894431505
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2876586914062	2	518.287671	1034.56079	-1.4149	-0.00073332	1.4667	0.00076016	0.051778	2.6836E-05	518.2884440328826	29.617	0.16497	29.617	29.529	29.694	0					6	4	2	0	0	0	0.080725	1	9988	9988		94.409	34.291	1	216370			38003	5738	26074	26166	38469	38469					0.044891178894431505
SSASALTGLTK	11	Unmodified	_SSASALTGLTK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant;INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2877807617188	2	518.287671	1034.56079	1.578	0.00081788	1.3558	0.00070271	2.9339	0.0015206	518.2876483909888	29.79	0.36715	29.79	29.681	30.048	0					17	7	4	0	0	0	0.004134	1	10964	10964		128.35	68.23	1	887030			38004	5738	26074	26166	38470	38470					0.044891178894431505
SSASILESK	9	Unmodified	_SSASILESK_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2479553222656	2	461.248015	920.481476	-0.14999	-6.9185E-05	-0.2967	-0.00013685	-0.44669	-0.00020604	461.24784498842905	24.469	0.26595	24.469	24.262	24.528	0					8	5	3	0	0	0	0.026848	1	8580	8580		112.11	44.614	1	175660			38005	4092	26075	26167	38471	38471					0.018054709353464204
SSASILESK	9	Unmodified	_SSASILESK_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2477111816406	2	461.248015	920.481476	-0.46003	-0.00021219	0.01312	6.0514E-06	-0.44691	-0.00020614	461.2478476303944	24.438	0.31785	24.438	24.229	24.547	0					8	6	2	0	0	0	0.13726	1	8443	8443		70.816	12.034	1	272680			38006	4092	26075	26167	38472	38472					0.018054709353464204
SSASSTSLK	9	Unmodified	_SSASSTSLK_					0	0	0		ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.22479248046875	2	434.224539	866.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.567	1	15.567	15.067	16.067	0								0	0	0	0.077333	1	4048	4048		78.264	21.83	1				38007	7395	26076	26168	38473	38473					-0.004033886158026689
SSASSTSLK	9	Unmodified	_SSASSTSLK_					0	0	0		ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.2243957519531	2	434.224539	866.434526	-0.45052	-0.00019563	0.22265	9.6682E-05	-0.22786	-9.8943E-05	434.2246642419909	15.543	0.16614	15.543	15.434	15.6	0					5	3	2	0	0	0	0.095583	1	4282	4282		80.455	18.347	1	268320			38008	7395	26076	26168	38474	38474					-0.004033886158026689
SSASSTSLK	9	Unmodified	_SSASSTSLK_					0	0	0		ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	ENSG00000196781|ENST00000376499|TLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.22430419921875	2	434.224539	866.434526	-0.51113	-0.00022194	0.13613	5.9111E-05	-0.375	-0.00016283	434.2246131815808	15.505	0.19951	15.505	15.414	15.613	0					7	4	2	0	0	0	0.28897	1	4113	4113		51.193	10.415	1	249410			38009	7395	26076	26168	38475	38475					-0.004033886158026689
SSASVTSLLT	10	Unmodified	_SSASVTSLLT_					0	0	0		MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.5102233886719	3	322.50984	964.507691	1.5181	0.0004896	-0.36771	-0.00011859	1.1504	0.00037101	322.5097644438704	14.888	0.26477	14.888	14.78	15.045	0					15	5	4	0	0	0	0.64162	1	3972	3972		29.17	3.596	1	1654300			38010	6840	26077	26169	38476	38476					0.024017401068249455
SSATEAAKP	9	Unmodified	_SSATEAAKP_					0	0	0			REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.2191162109375	2	431.219257	860.423961	-0.49051	-0.00021152	-0.026177	-1.1288E-05	-0.51669	-0.00022281	431.21925118505146	13.761	0.68388	13.761	13.517	14.201	0					43	14	5	0	0	0	0.055856	1	3522	3522		93.195	5.4412	1	3442200	+		38011	14562	26078	26170	38477	38477					-0.011833712702355115
SSATETINK	9	Unmodified	_SSATETINK_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7435607910156	2	475.743096	949.47164	-0.0035626	-1.6949E-06	0.042622	2.0277E-05	0.03906	1.8582E-05	475.743060095313	16.842	0.16248	16.842	16.778	16.94	0					13	7	2	0	0	0	0.04067	1	3901	3901		98.582	21.808	1	157760			38012	1919	26079	26171	38478	38478					-0.005117170700373208
SSATETINK	9	Unmodified	_SSATETINK_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7421875	2	475.743096	949.47164	-1.5452	-0.00073511	1.5518	0.00073825	0.0065879	3.1341E-06	475.7437478958096	16.898	0.11361	16.898	16.831	16.944	0					11	5	3	0	0	0	0.020674	1	4131	4131		120.87	32.691	1	152500			38013	1919	26079	26171	38479	38479					-0.005117170700373208
SSATETINK	9	Unmodified	_SSATETINK_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7433166503906	2	475.743096	949.47164	-0.075993	-3.6153E-05	0.89528	0.00042592	0.81929	0.00038977	475.74340243828277	16.908	0.14037	16.908	16.817	16.957	0					6	3	2	0	0	0	0.085655	1	4116	4116		82.75	15.257	1	69463			38014	1919	26079	26171	38480	38480					-0.005117170700373208
SSATETINK	9	Unmodified	_SSATETINK_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.74273681640625	2	475.743096	949.47164	-0.40665	-0.00019346	0.22808	0.00010851	-0.17857	-8.4952E-05	475.74301286770003	16.891	0.13152	16.891	16.846	16.978	0					5	3	2	0	0	0	0.013878	1	4109	4109		132.76	66.329	1	265600			38015	1919	26079	26171	38481	38481					-0.005117170700373208
SSATETINK	9	Unmodified	_SSATETINK_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7426452636719	2	475.743096	949.47164	-0.61708	-0.00029357	-0.22995	-0.0001094	-0.84703	-0.00040297	475.742971909611	17.098	0.27082	17.098	16.988	17.259	0					12	5	3	0	0	0	0.00073892	1	4860	4860		185.55	75.43	1	1538600			38016	1919	26079	26171	38482	38482					-0.005117170700373208
SSATIGPKP	9	Unmodified	_SSATIGPKP_					0	0	0			REV__nc|ENSG00000114423|Q13191-3|CBLB	REV__nc|ENSG00000114423|Q13191-3|CBLB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2400817871094	2	429.239993	856.465432	1.0896	0.00046768	-0.81987	-0.00035192	0.26969	0.00011576	429.2396261991692	19.526	0.61819	19.526	19.31	19.928	0					39	18	3	0	0	0	0.39215	1	5176	5176		42.396	5.237	1	384300	+		38017	14070	26080	26172	38483	38483					0.03145809489092244
SSATKVPPA	9	Unmodified	_SSATKVPPA_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5;OSBPL5|p.Y76C|1|0.14|ENSG00000021762|chr11:3122421-3122421|T/C|missense_variant;ENST00000465323.1_1_11:3143079-3150378:-|nuORF;ENST00000477622.1_1_11:3143079-3147843:-|nuORF;OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant;ENST00000534491.5_1_11:3114755-3187956:-|nuORF	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	429.2401428222656	2	429.239993	856.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.52	1	19.52	19.02	20.02	0								0	0	0	0.21054	1	5064	5064		49.442	3.4896	1				38018	1106	26081	26173	38484	38484					0.03145809489080875
SSATLASGPA	10	Unmodified	_SSATLASGPA_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.21929931640625	2	431.219257	860.423961	-0.49051	-0.00021152	-0.026177	-1.1288E-05	-0.51669	-0.00022281	431.21925118505146	13.761	0.68388	13.761	13.517	14.201	0					43	14	5	0	0	0	0.16018	1	3341	3341		84.916	2.675	1	3442200			38019	4561	26082	26174	38485	38485					-0.011833712702355115
SSATLASGPA	10	Unmodified	_SSATLASGPA_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2196044921875	2	431.219257	860.423961	-0.46478	-0.00020042	0.1656	7.1409E-05	-0.29918	-0.00012901	431.2193221982628	13.724	0.54083	13.724	13.437	13.978	0					25	11	3	0	0	0	0.22198	1	3196	3196		76.774	0	1	976260			38020	4561	26082	26174	38486	38486					-0.011833712702355115
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.81005859375	2	545.808771	1089.60299	1.738	0.00094861	-1.0901	-0.00059499	0.64788	0.00035362	545.8079466635796	29.87	0.23599	29.87	29.799	30.035	0					14	9	3	0	0	0	0.07149	1	9451	9451		96.665	34.558	1	187760			38021	1010	26083	26175	38487	38487					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.808837890625	2	545.808771	1089.60299	1.864	0.0010174	-1.976	-0.0010785	-0.112	-6.1132E-05	545.8073584364378	30.143	0.32857	30.143	30.05	30.378	0					25	8	4	0	0	0	0.084685	1	10847	10847		93.442	38.666	1	937320			38022	1010	26083	26175	38488	38488					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.81005859375	2	545.808771	1089.60299	0.49853	0.0002721	-0.20368	-0.00011117	0.29485	0.00016093	545.8083944492574	29.907	0.22189	29.907	29.831	30.053	0					17	8	3	0	0	0	0.33569	1	9761	9761		58.63	24.708	1	209700			38023	1010	26083	26175	38489	38489					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8088989257812	2	545.808771	1089.60299	1.9002	0.0010371	-2.5679	-0.0014016	-0.66769	-0.00036443	545.8070173426137	30.15	0.42251	30.15	29.993	30.416	0					23	9	3	0	0	0	0.00057589	2	11226	11226;11268		139.15	60.889	1	1260000			38024	1010	26083	26175	38490;38491	38490					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3115844726562	2	545.808771	1089.60299	1.1183	0.00061039	-1.3921	-0.00075983	-0.27381	-0.00014945	545.8076196134506	29.929	0.31944	29.929	29.839	30.158	0					16	8	3	0	0	0	0.2472	1	10113	10113		68.626	10.396	1	184460			38025	1010	26083	26175	38492	38492					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.8087768554688	2	545.808771	1089.60299	-1.4985	-0.00081787	0.72076	0.0003934	-0.7777	-0.00042448	545.8091874728433	29.926	0.24809	29.926	29.858	30.106	0					8	6	2	0	0	0	0.38061	1	10119	10119		53.597	0.24542	1	126860			38026	1010	26083	26175	38493	38493					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8094482421875	2	545.808771	1089.60299	0.56389	0.00030778	0.94017	0.00051315	1.5041	0.00082093	545.8092067498559	30.108	0.4116	30.108	29.997	30.408	0					13	8	2	0	0	0	0.00057589	1	11093	11093		139.15	64.11	1	317190			38027	1010	26083	26175	38494	38494					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8091430664062	2	545.808771	1089.60299	1.9359	0.0010566	-2.7021	-0.0014748	-0.76623	-0.00041822	545.8068520088069	30.09	0.3625	30.09	29.98	30.342	0					17	7	3	0	0	0	7.0259E-05	1	11089	11089		150.15	59.551	1	1363400			38028	1010	26083	26175	38495	38495					0.061770932978333803
SSATLNSIVAK	11	Unmodified	_SSATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP;MYLIP|p.K199Rfs*26|1|0.07|ENSG00000007944|chr6:16143150-16143151|-/GAATT|frameshift_variant;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8084716796875	2	545.808771	1089.60299	3.7553	0.0020497	-4.3391	-0.0023683	-0.58383	-0.00031866	545.8061703877064	30.093	0.36182	30.093	29.963	30.325	0					17	7	3	0	0	0	0.27635	1	11129	11129		65.278	4.3056	1	502370			38029	1010	26083	26175	38496	38496					0.061770932978333803
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7706298828125	2	536.769114	1071.52368	1.3522	0.00072584	0.54713	0.00029368	1.8994	0.0010195	536.7692879418998	33.232	0.28209	33.232	33.131	33.413	0					24	11	3	0	0	0	0.39827	1	10762	10762		56.434	19.987	1	158880			38030	3882	26084	26176	38497	38497					-0.00922553656278069
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.770263671875	2	536.769114	1071.52368	2.1275	0.001142	-0.61853	-0.00033201	1.5089	0.00080995	536.7686532125863	33.5	0.37265	33.5	33.379	33.752	0					28	9	4	0	0	0	0.05785	1	12366	12366		106.68	37.055	1	1901400			38031	3882	26084	26176	38498	38498					-0.00922553656278069
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.769287109375	2	536.769114	1071.52368	1.8586	0.00099761	-0.94287	-0.00050611	0.91568	0.00049151	536.7685327145957	33.487	0.34673	33.487	33.344	33.69	0					27	8	5	0	0	0	0.0058631	1	12810	12810		163.15	80.91	1	2818700			38032	3882	26084	26176	38499	38499					-0.00922553656278069
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7696533203125	2	536.769114	1071.52368	1.0436	0.00056018	-0.022589	-1.2125E-05	1.021	0.00054805	536.7692522995369	33.26	0.50459	33.26	33.147	33.651	0					23	14	3	0	0	0	0.27065	1	11660	11660		70.816	19.624	1	353260			38033	3882	26084	26176	38500	38500					-0.00922553656278069
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.769287109375	2	536.769114	1071.52368	1.9502	0.0010468	-0.99565	-0.00053443	0.95455	0.00051237	536.7684486556856	33.441	0.36746	33.441	33.332	33.7	0					24	7	4	0	0	0	0.0084313	1	12698	12698		150.36	86.154	1	3116600			38034	3882	26084	26176	38501	38501					-0.00922553656278069
SSATTVTSK	9	Unmodified	_SSATTVTSK_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.2323913574219	2	441.232364	880.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.451	1	14.451	13.951	14.951	0								0	0	0	0.11159	1	3750	3750		68.846	18.822	1				38035	3189	26085	26177	38502	38502					0.005168979012410091
SSATTVTSK	9	Unmodified	_SSATTVTSK_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.231689453125	2	441.232364	880.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.439	1	14.439	13.939	14.939	0								0	0	0	0.15687	1	3592	3592		58.23	1.5089	1				38036	3189	26085	26177	38503	38503					0.005168979012410091
SSAVRDSLIKL	11	Unmodified	_SSAVRDSLIKL_					0	0	0			REV__ENSG00000186787|ENST00000434397|SPIN2B	REV__ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.8533325195312	2	594.85097	1187.68739	3.1702	0.0018858	0.90456	0.00053808	4.0748	0.0024239	594.8515778832791	40.785	0.23919	40.785	40.687	40.926	0					6	3	2	0	0	0	0.55715	1	16213	16213		40.058	4.4399	1	80994	+		38037	15330	26086	26178	38504	38504					0.10105044114629891
SSAVTSVAK	9	Unmodified	_SSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.2373046875	2	425.23745	848.460347	0.32164	0.00013677	-0.87702	-0.00037294	-0.55538	-0.00023617	425.2371382078957	18.278	0.52903	18.278	18.142	18.671	0					29	12	5	0	0	0	0.00026591	1	5302	5302		190.26	66.181	1	24615000			38038	5846	26087	26179	38505	38505					0.030055056264700397
SSAVTSVAK	9	Unmodified	_SSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2373046875	2	425.23745	848.460347	-0.36601	-0.00015564	-0.28704	-0.00012206	-0.65305	-0.0002777	425.2374141584613	18.216	0.62264	18.216	18.105	18.728	0					25	12	4	0	0	0	0.011389	1	5538	5538		138.06	25.651	1	26998000			38039	5846	26087	26179	38506	38506					0.030055056264700397
SSAVTSVAK	9	Unmodified	_SSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.2374572753906	2	425.23745	848.460347	0.15223	6.4732E-05	-0.2388	-0.00010155	-0.086578	-3.6816E-05	425.23735940466076	18.026	0.21094	18.026	17.924	18.135	0					8	4	2	0	0	0	0.0067848	1	4607	4607		150.36	49.109	1	943370			38040	5846	26087	26179	38507	38507					0.030055056264700397
SSAVTSVAK	9	Unmodified	_SSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.2375183105469	2	425.23745	848.460347	-0.37959	-0.00016142	0.43699	0.00018582	0.057398	2.4408E-05	425.2375843306672	18.182	0.45957	18.182	17.978	18.438	0					25	9	5	0	0	0	0.00026591	1	5402	5402		190.26	66.181	1	6495800			38041	5846	26087	26179	38508	38508					0.030055056264700397
SSAWHAPPV	9	Unmodified	_SSAWHAPPV_					0	0	0		ENSG00000196843|ENST00000357485|ARID5A;nc|ENSG00000196843|Q03989-5|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENSG00000196843|ENST00000357485|ARID5A	ENSG00000196843|ENST00000357485|ARID5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2380065917969	2	476.237784	950.461016	0.0012578	5.9899E-07	0.062983	2.9995E-05	0.064241	3.0594E-05	476.23780546845666	36.625	0.47343	36.625	36.529	37.003	0					54	25	3	0	0	0	0.49003	1	11997	11997		33.516	33.516	1	526470			38042	7398	26088	26180	38509	38509					-0.01619654933813308
SSCFLSVTPG	10	Unmodified	_SSCFLSVTPG_					0	0	0		ENST00000229179.8_1_12:69114940-69115675:+|nuORF	ENST00000229179.8_1_12:69114940-69115675:+|nuORF	ENST00000229179.8_1_12:69114940-69115675:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2379455566406	2	499.236593	996.458632	0.67757	0.00033827	2.4638	0.00123	3.1413	0.0015683	499.2378878970741	34.919	0.23886	34.919	34.848	35.087	0					12	6	2	0	0	0	0.46215	1	13062	13062		49.442	7.0454	1	107820			38043	8194	26089	26181	38510	38510					-0.03973871453774791
SSCGKFQTK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GKFQTK_	SSC(1)GKFQTK		SSC(64)GKFQTK		0	1	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant;DDX24|p.A177Rfs*34|1|0.2|ENSG00000089737|chr14:94079221-94079221|G/-|frameshift_variant;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.75390625	2	521.752941	1041.49133	0.37409	0.00019518	-0.19995	-0.00010433	0.17413	9.0855E-05	521.7531605543487	14.629	0.062566	14.629	14.586	14.649	0					8	3	3	0	0	0	0.18416	1	3197	3197		63.534	19.417	1	74159			38044	1821	26090	26182	38511	38511	76				-0.02775664330943073
SSCGKFQTK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GKFQTK_	SSC(1)GKFQTK		SSC(120)GKFQTK		0	1	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant;DDX24|p.A177Rfs*34|1|0.2|ENSG00000089737|chr14:94079221-94079221|G/-|frameshift_variant;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7530517578125	2	521.752941	1041.49133	1.7635	0.00092011	-1.8943	-0.00098837	-0.13082	-6.8257E-05	521.7521359910702	14.88	0.21377	14.88	14.78	14.994	0					11	4	4	0	0	0	0.022525	1	3949	3949		117.81	38.36	1	732120			38045	1821	26090	26182	38512	38512	76				-0.02775664330943073
SSCGKFQTK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GKFQTK_	SSC(1)GKFQTK		SSC(130)GKFQTK		0	1	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant;DDX24|p.A177Rfs*34|1|0.2|ENSG00000089737|chr14:94079221-94079221|G/-|frameshift_variant;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7536010742188	2	521.752941	1041.49133	-1.3196	-0.00068849	1.6342	0.00085265	0.31464	0.00016416	521.7540155994357	14.664	0.096859	14.664	14.623	14.72	0					6	3	2	0	0	0	0.013878	1	3147	3147		132.76	50.453	1	83717			38046	1821	26090	26182	38513	38513	76				-0.02775664330943073
SSCGKFQTK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GKFQTK_	SSC(1)GKFQTK		SSC(88)GKFQTK		0	1	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant;DDX24|p.A177Rfs*34|1|0.2|ENSG00000089737|chr14:94079221-94079221|G/-|frameshift_variant;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7532348632812	2	521.752941	1041.49133	1.6244	0.00084754	-1.5291	-0.00079781	0.09532	4.9734E-05	521.7523244368695	14.851	0.21597	14.851	14.745	14.961	0					9	4	3	0	0	0	0.070005	1	3780	3780		88.177	27.205	1	986400			38047	1821	26090	26182	38514	38514	76				-0.02775664330943073
SSCGLPLGK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GLPLGK_	SSC(1)GLPLGK		SSC(74)GLPLGK		0	1	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.73974609375	2	459.739302	917.464052	0.078271	3.5984E-05	0.15901	7.3102E-05	0.23728	0.00010909	459.7393451457389	27.099	0.22591	27.099	27.012	27.238	0					10	8	2	0	0	0	0.12239	1	8322	8322		74.255	31.859	1	107050			38048	1342	26091	26183	38515	38515	48				0.002018521287027397
SSCGLPLGK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GLPLGK_	SSC(1)GLPLGK		SSC(90)GLPLGK		0	1	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7393493652344	2	459.739302	917.464052	0.81463	0.00037452	-1.5845	-0.00072844	-0.76984	-0.00035392	459.7387543071414	27.382	0.34291	27.382	27.251	27.594	0					15	8	3	0	0	0	0.063823	1	9550	9550		90.37	13.523	1	541680			38049	1342	26091	26183	38516	38516	48				0.002018521287027397
SSCGLPLGK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GLPLGK_	SSC(1)GLPLGK		SSC(57)GLPLGK		0	1	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7395324707031	2	459.739302	917.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.163	1	27.163	26.663	27.663	0								0	0	0	0.1633	1	8626	8626		56.721	12.604	1				38050	1342	26091	26183	38517	38517	48				0.002018521287027397
SSCGLPLGK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GLPLGK_	SSC(1)GLPLGK		SSC(100)GLPLGK		0	1	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.73919677734375	2	459.739302	917.464052	-0.15491	-7.122E-05	-0.42284	-0.00019439	-0.57775	-0.00026561	459.73908804576644	27.381	0.2191	27.381	27.27	27.49	0					8	4	2	0	0	0	0.037569	1	9899	9899		101.6	46.824	1	316740			38051	1342	26091	26183	38518	38518	48				0.002018521287027397
SSCGLPLGK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GLPLGK_	SSC(1)GLPLGK		SSC(66)GLPLGK		0	1	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7391662597656	2	459.739302	917.464052	-0.1019	-4.6849E-05	-0.40337	-0.00018544	-0.50527	-0.00023229	459.7390892582818	27.145	0.1331	27.145	27.102	27.235	0					5	3	2	0	0	0	0.16002	1	8851	8851		66.429	13.078	1	65978			38052	1342	26091	26183	38519	38519	48				0.002018521287027397
SSCGSVLFH	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GSVLFH_	SSC(1)GSVLFH		SSC(63)GSVLFH		0	1	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;KCTD3|p.G267Efs*15|1|0.26|ENSG00000136636|chr1:215586664-215586664|G/-|frameshift_variant;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.22625732421875	2	497.226559	992.438566	-1.157	-0.00057527	0.13983	6.9526E-05	-1.0171	-0.00050574	497.226659646808	31.526	0.13897	31.526	31.477	31.616	0					8	5	2	0	0	0	0.18605	1	10450	10450		63.306	26.147	1	77065			38053	4095	26092	26184	38520	38520	177				-0.05795622393736721
SSCGSVLFH	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))GSVLFH_	SSC(1)GSVLFH		SSC(66)GSVLFH		0	1	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;KCTD3|p.G267Efs*15|1|0.26|ENSG00000136636|chr1:215586664-215586664|G/-|frameshift_variant;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2264404296875	2	497.226559	992.438566	0.7796	0.00038764	-0.9731	-0.00048385	-0.1935	-9.6212E-05	497.2259558733849	31.757	0.25866	31.757	31.653	31.911	0					11	5	3	0	0	0	0.16524	1	12021	12021		65.803	16.362	1	475890			38054	4095	26092	26184	38521	38521	177				-0.05795622393736721
SSCKVLGK	8	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))KVLGK_	SSC(1)KVLGK		SSC(71)KVLGK		0	1	0		ENST00000512214.1_1_4:164533579-164533678:-|nuORF	ENST00000512214.1_1_4:164533579-164533678:-|nuORF	ENST00000512214.1_1_4:164533579-164533678:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.25341796875	2	439.741845	877.469137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.171	1	24.171	23.671	24.671	0								0	0	0	1.7419	1	8104	8104		71.296	9.1883	1				38055	10239	26093	26185	38522	38522	412				0.02550155991320935
SSCPQQWIK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))PQQWIK_	SSC(1)PQQWIK		SSC(48)PQQWIK		0	1	0		nc|ENSG00000168275|Q5JTJ3|COA6;nc|ENSG00000168275|Q5JTJ3-3|COA6;ENSG00000168275|ENST00000366615|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.2739868164062	2	567.274041	1132.53353	1.1822	0.00067065	-1.2495	-0.00070881	-0.067268	-3.8159E-05	567.2731332247615	30.729	0.18039	30.729	30.646	30.827	0					12	7	2	0	0	0	0.33044	1	9810	9810		47.657	18.487	1	59299			38056	11639	26094	26186	38523	38523	460				-0.027436889225555205
SSCPQQWIK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))PQQWIK_	SSC(1)PQQWIK		SSC(70)PQQWIK		0	1	0		nc|ENSG00000168275|Q5JTJ3|COA6;nc|ENSG00000168275|Q5JTJ3-3|COA6;ENSG00000168275|ENST00000366615|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.2744750976562	2	567.274041	1132.53353	0.202	0.00011459	0.46577	0.00026422	0.66777	0.00037881	567.2741835381888	30.952	0.21564	30.952	30.865	31.08	0					11	5	3	0	0	0	0.1424	1	11244	11244		69.628	27.29	1	438860			38057	11639	26094	26186	38524	38524	460				-0.027436889225555205
SSCPQQWIK	9	Carbamidomethyl (C)	_SSC(Carbamidomethyl (C))PQQWIK_	SSC(1)PQQWIK		SSC(57)PQQWIK		0	1	0		nc|ENSG00000168275|Q5JTJ3|COA6;nc|ENSG00000168275|Q5JTJ3-3|COA6;ENSG00000168275|ENST00000366615|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	nc|ENSG00000168275|Q5JTJ3|COA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.2748413085938	2	567.274041	1132.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31	1	31	30.5	31.5	0								0	0	0	0.1633	1	11647	11647		56.721	18.91	1				38058	11639	26094	26186	38525	38525	460				-0.027436889225555205
SSCTVLAKK	9	Unmodified	_SSCTVLAKK_					0	0	0			REV__ENSG00000279486|ENST00000641258|OR2AG1	REV__ENSG00000279486|ENST00000641258|OR2AG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7625732421875	2	468.762778	935.511002	0.56617	0.0002654	-1.117	-0.0005236	-0.55081	-0.0002582	468.7622955644375	16.836	0.11147	16.836	16.78	16.891	0					4	2	2	0	0	0	0.12239	1	4754	4754		74.255	5.7703	1	885420	+		38059	17157	26095	26187	38526	38526					0.040667116798204006
SSDELAAKQV	10	Unmodified	_SSDELAAKQV_					0	0	0			REV__nc|ENSG00000151491|Q12929-2|EPS8	REV__nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2711791992188	2	524.269478	1046.5244	3.4299	0.0017982	0.061446	3.2214E-05	3.4913	0.0018304	524.2694728516559	11.674	0.068643	11.674	11.635	11.704	0					7	3	3	0	0	0	0.55603	1	2322	2322		39.253	0	1	83485	+		38060	15477	26096	26188	38527	38527					0.0030024099276033667
SSDERYRPGGK	11	Unmodified	_SSDERYRPGGK_					0	0	0		ENST00000505443.1_1_5:3422621-3535901:-|nuORF	ENST00000505443.1_1_5:3422621-3535901:-|nuORF	ENST00000505443.1_1_5:3422621-3535901:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	626.3082885742188	2	626.307458	1250.60036	1.6339	0.0010233	-0.36144	-0.00022637	1.2724	0.00079694	626.3073776840622	15.845	0.14396	15.845	15.78	15.924	0					13	6	3	0	0	0	0.18431	1	3518	3518		76.17	5.7711	1	141470			38061	10183	26097	26189	38528	38528					-0.014913621071173111
SSDGDLCLV	9	Carbamidomethyl (C)	_SSDGDLC(Carbamidomethyl (C))LV_	SSDGDLC(1)LV		SSDGDLC(63)LV		0	1	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.21600341796875	2	483.215857	964.417161	0.59472	0.00028738	-0.59269	-0.0002864	0.0020265	9.7922E-07	483.2155735691023	18.71	0.21564	18.71	18.6	18.816	0					16	5	4	0	0	0	0.18605	1	5523	5523		63.306	12.114	1	385360			38062	5685	26098	26190	38529	38529	237				-0.06647052213111238
SSDIGAVVL	9	Unmodified	_SSDIGAVVL_					0	0	0			REV__KMT2D|p.D1343G|1|0.4|ENSG00000167548|chr12:49048762-49048762|T/C|missense_variant	REV__KMT2D|p.D1343G|1|0.4|ENSG00000167548|chr12:49048762-49048762|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7397766113281	2	430.739825	859.465098	-0.24855	-0.00010706	-0.18569	-7.9986E-05	-0.43424	-0.00018705	430.7397345951282	29.19	0.48901	29.19	28.874	29.363	0					44	18	3	0	0	0	0.25109	1	9242	9242		55.504	2.1528	1	533810	+		38063	20795	26099	26191	38530	38530					0.029743897692469545
SSDIQVKEL	9	Unmodified	_SSDIQVKEL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7745361328125	2	509.774396	1017.53424	-0.014027	-7.1505E-06	0.39294	0.00020031	0.37891	0.00019316	509.7745343769548	31.609	0.49763	31.609	31.402	31.899	0					17	12	3	0	0	0	0.21419	1	11533	11533		59.931	3.497	1	328600			38064	3051	26100	26192	38531	38531					0.026174289981327092
SSDLLFLLERT	11	Unmodified	_SSDLLFLLERT_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	647.3565063476562	2	647.356085	1292.69762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.656	1	32.656	32.156	33.156	0								0	0	0	0.31916	1	10567	10567		32.751	0	1		+		38065	15260	26101	26193	38532	38532					0.06297607049191356
SSDPKSSHLK	10	Unmodified	_SSDPKSSHLK_					0	0	0		SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant;nc|ENSG00000171992|Q8N3V7-3|SYNPO;SYNPO|p.V892Cfs*70|1|0.42|ENSG00000171992|chr5:150650212-150650212|C/-|frameshift_variant;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant	SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2841186523438	2	543.28292	1084.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.968	1	12.968	12.468	13.468	0								0	0	0	0.14595	1	3048	3048		70.816	12.034	1				38066	6337	26102	26194	38533	38533					0.012393496039521779
SSDPKSSHLK	10	Unmodified	_SSDPKSSHLK_					0	0	0		SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant;nc|ENSG00000171992|Q8N3V7-3|SYNPO;SYNPO|p.V892Cfs*70|1|0.42|ENSG00000171992|chr5:150650212-150650212|C/-|frameshift_variant;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant	SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2830200195312	2	543.28292	1084.55129	0.61189	0.00033243	0.00093832	5.0977E-07	0.61282	0.00033294	543.2826414515696	12.906	0.10869	12.906	12.838	12.947	0					4	2	2	0	0	0	0.18316	1	2869	2869		81.525	7.27	1	58226			38067	6337	26102	26194	38534	38534					0.012393496039521779
SSDRSTLGAAG	11	Unmodified	_SSDRSTLGAAG_					0	0	0			REV__ENSG00000118960|ENST00000304031|HS1BP3	REV__ENSG00000118960|ENST00000304031|HS1BP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2483215332031	2	511.249077	1020.4836	-0.43675	-0.00022329	-0.76928	-0.00039329	-1.206	-0.00061658	511.24866408775364	16.655	0.30205	16.655	16.547	16.849	0					14	6	4	0	0	0	0.30464	1	4790	4790		62.107	12.571	1	2093900	+		38068	14230	26103	26195	38535	38535					-0.025821003268447384
SSDSGSGFWK	10	Unmodified	_SSDSGSGFWK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2332763671875	2	529.232896	1056.45124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.251	1	31.251	30.751	31.751	0								0	0	0	0.021408	1	10032	10032		98.582	16.341	1				38069	3484	26104	26196	38536	38536					-0.07472887729841204
SSDSGSGFWK	10	Unmodified	_SSDSGSGFWK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.233154296875	2	529.232896	1056.45124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.517	1	31.517	31.017	32.017	0								0	0	0	0.016192	1	11481	11481		126.24	64.551	1				38070	3484	26104	26196	38537	38537					-0.07472887729841204
SSDSGSGFWK	10	Unmodified	_SSDSGSGFWK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.232177734375	2	529.232896	1056.45124	1.2321	0.00065206	-0.42694	-0.00022595	0.80515	0.00042611	529.2327122322146	31.336	0.21414	31.336	31.232	31.446	0					9	5	2	0	0	0	0.065778	1	10775	10775		104.01	38.548	1	98058			38071	3484	26104	26196	38538	38538					-0.07472887729841204
SSDSGSGFWK	10	Unmodified	_SSDSGSGFWK_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2324829101562	2	529.232896	1056.45124	1.6297	0.00086251	-0.79595	-0.00042124	0.83378	0.00044127	529.2323825574548	31.513	0.46456	31.513	31.353	31.818	0					15	9	3	0	0	0	0.01215	1	11779	11779		134.77	81.829	1	625450			38072	3484	26104	26196	38539	38539					-0.07472887729841204
SSEAPLVQK	9	Unmodified	_SSEAPLVQK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.76318359375	2	479.763832	957.513111	0.027307	1.3101E-05	0.16792	8.0561E-05	0.19522	9.3662E-05	479.76369712853364	21.176	0.14766	21.176	21.098	21.246	0					6	4	2	0	0	0	0.048471	1	5799	5799		95.815	31.608	1	81117			38073	1272	26105	26197	38540	38540					0.032654636892857525
SSEAPLVQK	9	Unmodified	_SSEAPLVQK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.76373291015625	2	479.763832	957.513111	0.47918	0.0002299	-2.0601	-0.00098837	-1.5809	-0.00075848	479.76347404136345	21.435	0.31572	21.435	21.264	21.579	0					11	7	2	0	0	0	0.048471	1	6842	6842		95.815	21.84	1	623490			38074	1272	26105	26197	38541	38541					0.032654636892857525
SSEAPLVQK	9	Unmodified	_SSEAPLVQK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7635498046875	2	479.763832	957.513111	-0.65397	-0.00031375	-0.97053	-0.00046562	-1.6245	-0.00077937	479.7637539274172	21.395	0.36287	21.395	21.142	21.505	0					11	7	2	0	0	0	0.023928	1	6970	6970		115.49	25.124	1	713220			38075	1272	26105	26197	38542	38542					0.032654636892857525
SSEAPLVQK	9	Unmodified	_SSEAPLVQK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7635803222656	2	479.763832	957.513111	0.92292	0.00044278	-2.8319	-0.0013586	-1.909	-0.00091587	479.7631265588494	21.331	0.46102	21.331	21.126	21.587	0					21	9	4	0	0	0	0.012231	1	6962	6962		136.27	53.963	1	706180			38076	1272	26105	26197	38543	38543					0.032654636892857525
SSEEGHSDL	9	Unmodified	_SSEEGHSDL_					0	0	0			REV__GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	REV__GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.6988220214844	2	480.698886	959.383219	-1.37	-0.00065857	1.0849	0.00052152	-0.28511	-0.00013705	480.69965720214543	26.414	0.30835	26.414	26.274	26.582	0					29	10	4	0	0	0	0.45358	1	8273	8273		37.159	7.3176	1	754570	+		38077	16779	26106	26198	38544	38544					-0.0980975738050347
SSEILNKL	8	Unmodified	_SSEILNKL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;DLG5|p.P861Qfs*32|1|0.31|ENSG00000151208|chr10:77821902-77821902|G/-|frameshift_variant;DLG5|p.P1167Rfs*16|1|0.62|ENSG00000151208|chr10:77819921-77819921|G/-|frameshift_variant	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.25958251953125	2	452.260925	902.507297	-0.51979	-0.00023508	-0.17053	-7.7125E-05	-0.69032	-0.00031221	452.26078764462073	30.402	0.45442	30.402	30.156	30.61	0					27	11	4	0	0	0	0.30437	1	10931	10931		82.305	2.5924	1	1736600			38078	799	26107	26199	38545	38545					0.052143651776077604
SSEPVVTM	8	Unmodified	_SSEPVVTM_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.2051696777344	2	425.204761	848.394969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.431	1	15.431	14.931	15.931	0								0	0	0	1.7419	1	3515	3515		13.775	3.5906	1				38079	5298	26108	26200	38546	38546					-0.03529231890877327
SSERLALE	8	Unmodified	_SSERLALE_					0	0	0			REV__MGRN1|p.A483T|1|0.35|ENSG00000102858|chr16:4682911-4682911|G/A|missense_variant	REV__MGRN1|p.A483T|1|0.35|ENSG00000102858|chr16:4682911-4682911|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7403564453125	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.891	1	24.891	24.391	25.391	0								0	0	0	1.7419	1	7832	7832		40.573	0	1		+		38080	13649	26109	26201	38547	38547					0.010566041381366631
SSETKGNIQ	9	Unmodified	_SSETKGNIQ_					0	0	0			REV__ENSG00000146247|ENST00000275034|PHIP	REV__ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2404479980469	2	482.240721	962.466889	0.56145	0.00027076	-0.64827	-0.00031262	-0.086815	-4.1866E-05	482.2404123108616	17.738	0.30128	17.738	17.658	17.959	0					11	7	3	0	0	0	0.032052	1	5055	5055		107.01	0.32444	1	752010	+		38081	15308	26110	26202	38548	38548					-0.01584601212812231
SSEVSATT	8	Unmodified	_SSEVSATT_					0	0	0		nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.18218994140625	2	391.18234	780.350128	0.43536	0.0001703	-0.19218	-7.5178E-05	0.24317	9.5125E-05	391.1823061795076	18.284	1.688	18.284	18.022	19.71	0					51	34	3	0	0	0	0.79882	1	5768	5768		19.36	19.36	1	16432000			38082	4916	26111	26203	38549	38549					-0.048833394325697554
SSFCCRRTV	9	Unmodified	_SSFCCRRTV_					0	0	0		ENST00000514858.5_1_4:2172840-2209821:-|nuORF	ENST00000514858.5_1_4:2172840-2209821:-|nuORF	ENST00000514858.5_1_4:2172840-2209821:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7479858398438	2	529.747136	1057.47972	0.42058	0.0002228	0.47896	0.00025373	0.89953	0.00047652	529.7475745918666	28.049	0.36946	28.049	27.949	28.319	0					20	13	3	0	0	0	0.17854	1	8991	8991		64.207	0.67341	1	277750			38083	10259	26112	26204	38550	38550					-0.04672184625928821
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7952270507812	2	525.795132	1049.57571	0.51961	0.00027321	0.025837	1.3585E-05	0.54545	0.00028679	525.7951292207034	38.033	0.1257	38.033	37.987	38.112	0					9	7	2	0	0	0	0.19605	1	12833	12833		62.107	24.948	1	60437			38084	2528	26114	26205	38551	38551					0.052906097574805244
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.79541015625	2	525.795132	1049.57571	1.77	0.00093064	-1.4065	-0.00073951	0.36351	0.00019113	525.7944367128109	38.254	0.17162	38.254	38.168	38.339	0					15	6	3	0	0	0	0.035062	1	14992	14992		104.06	43.085	1	299610			38085	2528	26114	26205	38552	38552					0.052906097574805244
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7949829101562	2	525.795132	1049.57571	1.1838	0.00062243	-0.28106	-0.00014778	0.90274	0.00047466	525.7945255727288	38.013	0.095188	38.013	37.976	38.071	0					7	5	2	0	0	0	0.27249	1	13603	13603		52.937	3.4952	1	44287			38086	2528	26114	26205	38553	38553					0.052906097574805244
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7957153320312	2	525.795132	1049.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.019	1	38.019	37.519	38.519	0								0	0	0	0.29356	1	13607	13607		36.447	2.2742	1				38087	2528	26114	26205	38554	38554					0.052906097574805244
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.79541015625	2	525.795132	1049.57571	1.6271	0.0008555	-1.8388	-0.00096681	-0.2117	-0.00011131	525.7941683465567	38.19	0.15575	38.19	38.111	38.267	0					6	3	2	0	0	0	0.016683	1	14994	14994		127.46	53.207	1	276210			38088	2528	26114	26205	38555	38555					0.052906097574805244
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7948608398438	2	525.795132	1049.57571	3.451	0.0018145	-3.3471	-0.0017599	0.10395	5.4654E-05	525.7932448020503	38.195	0.20146	38.195	38.099	38.3	0					9	4	3	0	0	0	0.078509	1	15007	15007		85.161	27.35	1	363500			38089	2528	26114	26205	38556	38556					0.052906097574805244
SSFGEFLSK	9	Unmodified	_SSFGEFLSK_					0	0	0		nc|ENSG00000075790|Q9UHQ4-2|BCAP29	nc|ENSG00000075790|Q9UHQ4-2|BCAP29	nc|ENSG00000075790|Q9UHQ4-2|BCAP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.25048828125	2	501.250557	1000.48656	0.68006	0.00034088	-0.50333	-0.00025229	0.17673	8.8586E-05	501.2502898412603	40.287	0.16257	40.287	40.201	40.364	0					20	7	3	0	0	0	0.40353	1	15344	15344		41.427	8.6142	1	121070			38090	11439	26115	26206	38557	38557					-0.013662252020367305
SSFGEFLSK	9	Unmodified	_SSFGEFLSK_					0	0	0		nc|ENSG00000075790|Q9UHQ4-2|BCAP29	nc|ENSG00000075790|Q9UHQ4-2|BCAP29	nc|ENSG00000075790|Q9UHQ4-2|BCAP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2501220703125	2	501.250557	1000.48656	0.14831	7.4341E-05	0.037923	1.9009E-05	0.18623	9.3349E-05	501.2504936087298	40.023	0.076778	40.023	39.986	40.062	0					6	4	2	0	0	0	0.3269	1	14241	14241		47.96	3.8427	1	61304			38091	11439	26115	26206	38558	38558					-0.013662252020367305
SSFGEFLSK	9	Unmodified	_SSFGEFLSK_					0	0	0		nc|ENSG00000075790|Q9UHQ4-2|BCAP29	nc|ENSG00000075790|Q9UHQ4-2|BCAP29	nc|ENSG00000075790|Q9UHQ4-2|BCAP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2511291503906	2	501.250557	1000.48656	1.1236	0.00056322	-0.48599	-0.0002436	0.63765	0.00031962	501.2503716624189	40.177	0.31523	40.177	40.092	40.407	0					21	7	5	0	0	0	0.10915	1	15946	15946		77.318	13.11	1	410870			38092	11439	26115	26206	38559	38559					-0.013662252020367305
SSFGGLILSK	10	Unmodified	_SSFGGLILSK_					0	0	0		nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7893371582031	2	504.78985	1007.56515	-0.80674	-0.00040723	0.27373	0.00013818	-0.53301	-0.00026906	504.7897821779228	41.28	0.11519	41.28	41.227	41.342	0					10	6	2	0	0	0	0.46989	1	13731	13731		48.602	7.1749	1	79621			38093	2856	26116	26207	38560	38560					0.061666271030503594
SSFGGLILSK	10	Unmodified	_SSFGGLILSK_					0	0	0		nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.79052734375	2	504.78985	1007.56515	1.0441	0.00052703	-0.76419	-0.00038576	0.27987	0.00014127	504.78960919618817	41.488	0.17841	41.488	41.391	41.569	0					20	7	3	0	0	0	0.034592	1	16295	16295		114.86	34.404	1	308880			38094	2856	26116	26207	38561	38561					0.061666271030503594
SSFGGLILSK	10	Unmodified	_SSFGGLILSK_					0	0	0		nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	nc|ENSG00000114544|Q96GZ6-8|SLC41A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7895202636719	2	504.78985	1007.56515	1.2187	0.00061518	-1.3331	-0.00067293	-0.11442	-5.7757E-05	504.7892596788917	41.441	0.4227	41.441	41.145	41.568	0					18	10	3	0	0	0	0.012356	1	16477	16477		133.99	57.824	1	360840			38095	2856	26116	26207	38562	38562					0.061666271030503594
SSFGKDGTK	9	Unmodified	_SSFGKDGTK_					0	0	0			REV__ENST00000536760.1_1_12:110002806-110011285:-|nuORF	REV__ENST00000536760.1_1_12:110002806-110011285:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7324523925781	2	463.732532	925.45051	-0.14952	-6.9336E-05	-0.39133	-0.00018147	-0.54085	-0.00025081	463.73236088062964	18.011	0.10989	18.011	17.924	18.034	0					4	2	2	0	0	0	0.14578	1	4609	4609		68.846	0.059317	1	108030	+		38096	15028	26117	26208	38563	38563					-0.015196823789096925
SSFGNMIYK	9	Unmodified	_SSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7529907226562	2	523.75241	1045.49027	0.52358	0.00027423	1.1784	0.00061717	1.7019	0.00089139	523.7528806508288	35.528	0.34354	35.528	35.435	35.779	0					35	17	3	0	0	0	0.17854	1	12016	12016		64.207	23.429	1	294930			38097	3161	26118	26209	38564	38564					-0.03065878699840141
SSFGNMIYK	9	Unmodified	_SSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7527465820312	2	523.75241	1045.49027	1.7879	0.00093644	0.40102	0.00021003	2.189	0.0011465	523.7521328155447	35.759	0.65825	35.759	35.49	36.148	0					41	16	4	0	0	0	0.02429	1	13866	13866		114.89	52.787	1	2674600			38098	3161	26118	26209	38565	38565					-0.03065878699840141
SSFGNMIYK	9	Unmodified	_SSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7537841796875	2	523.75241	1045.49027	1.1219	0.00058762	-0.5172	-0.00027089	0.60473	0.00031673	523.7520216689762	35.547	0.28627	35.547	35.438	35.724	0					20	11	3	0	0	0	0.21263	1	12660	12660		60.118	14.146	1	228750			38099	3161	26118	26209	38566	38566					-0.03065878699840141
SSFGNMIYK	9	Unmodified	_SSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7532348632812	2	523.75241	1045.49027	-1.2751	-0.00066781	3.9521	0.0020699	2.6771	0.0014021	523.7538150595011	35.541	0.25536	35.541	35.432	35.688	0					25	10	3	0	0	0	0.25716	1	12663	12663		54.776	1.4249	1	290680			38100	3161	26118	26209	38567	38567					-0.03065878699840141
SSFGNMIYK	9	Unmodified	_SSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7525024414062	2	523.75241	1045.49027	1.6262	0.00085173	-0.69888	-0.00036604	0.92733	0.00048569	523.7522470472603	35.679	0.61504	35.679	35.415	36.03	0					26	12	4	0	0	0	0.095583	1	13804	13804		80.455	20.161	1	2192300			38101	3161	26118	26209	38568	38568					-0.03065878699840141
SSFGNMIYK	9	Unmodified	_SSFGNMIYK_					0	0	0		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7525024414062	2	523.75241	1045.49027	3.4206	0.0017915	-1.6257	-0.00085149	1.7948	0.00094005	523.7511314168931	35.662	0.51273	35.662	35.501	36.013	0					18	10	2	0	0	0	0.04067	1	13796	13796		98.582	32.153	1	2301700			38102	3161	26118	26209	38569	38569					-0.03065878699840141
SSFGTILRK	9	Unmodified	_SSFGTILRK_					0	0	0		BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.N986Kfs*2|1|0.32|ENSG00000139618|chr13:32337305-32337306|-/A|frameshift_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.79534912109375	2	504.795466	1007.57638	-0.43438	-0.00021927	0.32895	0.00016605	-0.10543	-5.322E-05	504.79565644344257	28.215	0.40328	28.215	28.112	28.515	0					14	8	3	0	0	0	0.063171	1	10322	10322		90.601	23.107	1	581300			38103	315;316	26119	26210	38570	38570					0.0728944919718515
SSFLGSLFGS	10	Unmodified	_SSFLGSLFGS_					0	0	0		IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant;IQSEC2|p.A1347Lfs*50|1|0.45|ENSG00000124313|chrX:53234647-53234647|C/-|frameshift_variant;ENSG00000124313|ENST00000642864|IQSEC2	IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant	IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.25079345703125	2	501.250557	1000.48656	0.93748	0.00046991	-0.66889	-0.00033528	0.2686	0.00013463	501.24995075186735	40.223	0.17706	40.223	40.168	40.345	0					17	7	3	0	0	0	0.34667	1	15842	15842		62.107	12.897	1	327970			38104	3366	26120	26211	38571	38571					-0.013662252020480992
SSFLKRKE	8	Unmodified	_SSFLKRKE_					0	0	0			REV__MAP9|p.K567Rfs*13|5|0.22|ENSG00000164114|chr4:155352717-155352717|T/-|frameshift_variant	REV__MAP9|p.K567Rfs*13|5|0.22|ENSG00000164114|chr4:155352717-155352717|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.1941833496094	3	332.194186	993.56073	-0.033805	-1.123E-05	-0.15595	-5.1804E-05	-0.18975	-6.3034E-05	332.1941257851817	29.381	0.29009	29.381	29.297	29.587	0					15	7	3	0	0	0	0.8006	1	9873	9873		30.504	0	1	357740	+		38105	20864	26121	26212	38572	38572					0.06369162680141471
SSFMQALGK	9	Unmodified	_SSFMQALGK_					0	0	0		ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7470397949219	2	484.747127	967.479702	0.63963	0.00031006	-0.85203	-0.00041302	-0.2124	-0.00010296	484.7464123310309	37.153	0.12143	37.153	37.069	37.191	0					5	3	2	0	0	0	0.48389	1	14074	14074		34.173	0.65696	1	29217			38106	9037	26122	26213	38573	38573					-0.005338613542676285
SSFQFSIQK	9	Unmodified	_SSFQFSIQK_					0	0	0		nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1;nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2780151367188	2	536.277106	1070.53966	3.3534	0.0017983	0.22977	0.00012322	3.5832	0.0019216	536.277360207802	37.049	0.306	37.049	36.897	37.203	0					12	6	2	0	0	0	0.040209	1	14461	14461		99.013	22.239	1	570400			38107	4900	26123	26214	38574	38574					0.007211525806042118
SSFREMLQK	9	Unmodified	_SSFREMLQK_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.8620300292969	3	375.862219	1124.56483	-0.38439	-0.00014448	-0.06857	-2.5773E-05	-0.45296	-0.00017025	375.86226609164726	28.951	0.36431	28.951	28.809	29.174	0					12	7	3	0	0	0	0.17854	1	10544	10544		70.816	26.439	1	352150			38108	7262	26124	26215	38575	38575					0.007528841115345131
SSFRSRRK	8	Unmodified	_SSFRSRRK_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2951049804688	2	512.293956	1022.57336	1.4218	0.00072837	0.61492	0.00031502	2.0367	0.0010434	512.294434350743	18.671	0.98687	18.671	18.01	18.997	0					32	18	3	0	0	0	0.61925	1	5641	5641		44.117	44.117	1	936140	+		38109	15624	26125	26216	38576	38576					0.06297618863038679
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.1941223144531	3	332.194186	993.56073	0.37209	0.00012361	-0.53515	-0.00017777	-0.16306	-5.4168E-05	332.19396978282276	29.365	0.13031	29.365	29.269	29.399	0					12	5	3	0	0	0	0.59802	1	9253	9253		44.377	21.335	1	170230			38110	5498	26126	26217	38577	38577					0.06369162680130103
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.78759765625	2	497.787641	993.56073	-0.055754	-2.7754E-05	-0.50469	-0.00025123	-0.56045	-0.00027898	497.78736763749436	29.347	0.35707	29.347	29.231	29.588	0					29	12	4	0	0	0	0.032052	1	9241	9241		107.01	16.231	1	717600			38111	5498	26126	26217	38578	38578					0.06369162680130103
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7874450683594	2	497.787641	993.56073	-0.27962	-0.00013919	-0.41508	-0.00020662	-0.6947	-0.00034581	497.7874689656391	29.609	0.73314	29.609	29.473	30.206	0					39	18	4	0	0	0	0.013878	1	10579	10579		132.76	24.67	1	7481100			38112	5498	26126	26217	38579	38579					0.06369162680130103
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7874450683594	2	497.787641	993.56073	-0.71654	-0.00035669	0.2966	0.00014764	-0.41994	-0.00020904	497.78776420412964	29.591	0.55199	29.591	29.49	30.042	0					28	11	4	0	0	0	0.032052	1	10960	10960		107.01	22.092	1	4951600			38113	5498	26126	26217	38580	38580					0.06369162680130103
SSFSSGISVF	10	Unmodified	_SSFSSGISVF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.24798583984375	2	509.248015	1016.48148	0.19411	9.885E-05	-0.58473	-0.00029777	-0.39062	-0.00019892	509.24767434116063	27.777	0.75902	27.777	27.494	28.253	0					40	18	3	0	0	0	0.60076	1	9225	9225		34.173	0.65696	1	199430			38114	2207	26127	26218	38581	38581					-0.026105290646455614
SSFSSPHMK	9	Unmodified	_SSFSSPHMK_					0	0	0		ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7356872558594	2	504.234384	1006.45422	-0.062302	-3.1415E-05	-0.10472	-5.2804E-05	-0.16702	-8.4219E-05	504.23447548087813	20.356	0.20138	20.356	20.231	20.433	0					13	6	3	0	0	0	0.28897	1	5407	5407		51.193	27.67	1	60169			38115	5485	26128	26219	38582	38582					-0.04875335876693043
SSFVAPLEK	9	Unmodified	_SSFVAPLEK_					0	0	0		ENST00000573763.1_1_17:1675146-1678370:+|nuORF;ENSG00000132386|ENST00000254722|SERPINF1	ENST00000573763.1_1_17:1675146-1678370:+|nuORF	ENST00000573763.1_1_17:1675146-1678370:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.26885986328125	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.373	1	33.373	32.873	33.873	0								0	0	0	0.29421	1	12336	12336		29.17	0	1				38116	3783	26129	26220	38583	38583					0.033746516946507654
SSFYNTKKK	9	Unmodified	_SSFYNTKKK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.7987670898438	2	551.798206	1101.58186	1.3103	0.000723	-0.47543	-0.00026234	0.83483	0.00046066	551.7978963787453	15.299	0.12168	15.299	15.232	15.354	0					9	4	3	0	0	0	0.021961	1	3301	3301		118.74	47.447	1	242080			38117	6176	26130	26221	38584	38584					0.035131279889810685
SSFYNTKKK	9	Unmodified	_SSFYNTKKK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7987060546875	2	551.798206	1101.58186	0.59376	0.00032763	0.078347	4.3232E-05	0.6721	0.00037087	551.7982530140501	15.609	0.50034	15.609	15.52	16.021	0					22	12	4	0	0	0	0.013878	1	4058	4058		132.76	39.562	1	2078700			38118	6176	26130	26221	38585	38585					0.035131279889810685
SSFYNTKKK	9	Unmodified	_SSFYNTKKK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.7984619140625	2	551.798206	1101.58186	0.26162	0.00014436	0.35495	0.00019586	0.61657	0.00034022	551.7983109443379	15.351	0.13092	15.351	15.272	15.403	0					8	4	3	0	0	0	0.02953	1	3486	3486		109.48	16.283	1	203370			38119	6176	26130	26221	38586	38586					0.035131279889810685
SSFYNTKKK	9	Unmodified	_SSFYNTKKK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7986450195312	2	551.798206	1101.58186	1.6209	0.0008944	-0.54374	-0.00030004	1.0771	0.00059437	551.7978517080272	15.575	0.2192	15.575	15.517	15.736	0					8	4	3	0	0	0	0.0049871	1	4296	4296		158.07	61.884	1	2991800			38120	6176	26130	26221	38587	38587					0.035131279889810685
SSFYNTKKK	9	Unmodified	_SSFYNTKKK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7985229492188	2	551.798206	1101.58186	-1.3084	-0.00072198	2.4144	0.0013323	1.106	0.0006103	551.7993876864956	15.371	0.1772	15.371	15.33	15.507	0					9	5	3	0	0	0	0.0040894	1	3438	3438		162.25	74.498	1	389320			38121	6176	26130	26221	38588	38588					0.035131279889810685
SSGAKGVLPTW	11	Unmodified	_SSGAKGVLPTW_					0	0	0			REV__CCDC88C|p.R1860W|1|0.15|ENSG00000015133|chr14:91273134-91273134|G/A|missense_variant	REV__CCDC88C|p.R1860W|1|0.15|ENSG00000015133|chr14:91273134-91273134|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.20123291015625	3	368.201229	1101.58186	-0.20333	-7.4867E-05	0.10703	3.9407E-05	-0.096307	-3.546E-05	368.2013001088261	15.554	0.31769	15.554	15.497	15.815	0					14	6	4	0	0	0	0.56817	1	4136	4136		41.08	11.91	1	1275800	+		38122	12371	26131	26222	38589	38589					0.035131279889810685
SSGDIFLEK	9	Unmodified	_SSGDIFLEK_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2555847167969	2	498.25584	994.497126	-0.022128	-1.1026E-05	-0.045265	-2.2553E-05	-0.067393	-3.3579E-05	498.2558384101893	34.833	0.25083	34.833	34.735	34.986	0					19	7	4	0	0	0	0.0055674	1	13456	13456		155.58	59.394	1	302850			38123	178	26132	26223	38590	38590					-0.0003424254761057455
SSGDIFLEK	9	Unmodified	_SSGDIFLEK_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2561340332031	2	498.25584	994.497126	-0.2224	-0.00011081	2.9904	0.00149	2.768	0.0013792	498.25760469871415	34.629	0.27189	34.629	34.47	34.741	0					14	7	3	0	0	0	0.037712	1	12246	12246		101.46	30.082	1	291130			38124	178	26132	26223	38591	38591					-0.0003424254761057455
SSGFIFDLQ	9	Unmodified	_SSGFIFDLQ_					0	0	0		ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2521057128906	2	507.250557	1012.48656	2.9415	0.0014921	0.18393	9.3296E-05	3.1254	0.0015854	507.2506999324806	38.292	0.34018	38.292	38.186	38.526	0					14	7	3	0	0	0	0.28897	1	15055	15055		51.193	1.7511	1	755660			38125	3313	26133	26224	38592	38592					-0.019182252020527812
SSGFVAIKK	9	Unmodified	_SSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.77899169921875	2	468.779285	935.544017	-0.43372	-0.00020332	-0.13855	-6.4948E-05	-0.57227	-0.00026827	468.779193958632	21.823	0.32501	21.823	21.737	22.062	0					24	9	4	0	0	0	0.0033339	1	6052	6052		166.68	75.902	1	1684000			38126	7564	26134	26225	38593	38593					0.07366661794185347
SSGFVAIKK	9	Unmodified	_SSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7790222167969	2	468.779285	935.544017	-0.63643	-0.00029834	0.098989	4.6404E-05	-0.53744	-0.00025194	468.77928668654573	22.157	0.62818	22.157	22.017	22.645	0					35	14	4	0	0	0	0.016683	1	7163	7163		127.46	50.688	1	15290000			38127	7564	26134	26225	38594	38594					0.07366661794185347
SSGFVAIKK	9	Unmodified	_SSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.77935791015625	2	468.779285	935.544017	-1.0003	-0.00046894	0.83307	0.00039053	-0.16728	-7.8417E-05	468.77956808192397	21.85	0.15406	21.85	21.766	21.92	0					11	4	3	0	0	0	0.028876	1	6330	6330		110.12	60.095	1	420950			38128	7564	26134	26225	38595	38595					0.07366661794185347
SSGFVAIKK	9	Unmodified	_SSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7790222167969	2	468.779285	935.544017	-1.018	-0.00047721	0.47993	0.00022498	-0.53805	-0.00025223	468.77954350892696	22.045	0.26516	22.045	21.939	22.204	0					15	5	4	0	0	0	0.0061615	1	7395	7395		153.04	73.585	1	2597700			38129	7564	26134	26225	38596	38596					0.07366661794185347
SSGFVAIKK	9	Unmodified	_SSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7792053222656	2	468.779285	935.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.036	1	22.036	21.536	22.536	0								0	0	0	0.0062323	1	7268	7268		176.09	79.896	1				38130	7564	26134	26225	38597	38597					0.07366661794185347
SSGGVIWI	8	Unmodified	_SSGGVIWI_					0	0	0			REV__ENSG00000178700|ENST00000314636|DHFR2	REV__ENSG00000178700|ENST00000314636|DHFR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.72412109375	2	409.723978	817.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.66	1	39.66	39.16	40.16	0								0	0	0	1.7419	1	15109	15109		21.702	0	1		+		38131	16740	26135	26226	38598	38598					0.017384418059464224
SSGKFFTYK	9	Unmodified	_SSGKFFTYK_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2766723632812	2	532.7742	1063.53385	1.068	0.00056899	0.2902	0.00015461	1.3582	0.0007236	533.2763238772445	27.031	0.1112	27.031	26.978	27.089	0					4	2	2	0	0	0	0.39283	1	9761	9761		42.338	3.0852	1	78933			38132	2443	26136	26227	38599	38599					0.004620540689529662
SSGLLHLS	8	Unmodified	_SSGLLHLS_					0	0	0			REV__chr20:31744675-31757407|118|20.62|0.09|7.81|+|2|TE_info:AluJb,AluJb_dup120112,Alu,SINE,donor,-,31744514,31744675|None,TPX2|2	REV__chr20:31744675-31757407|118|20.62|0.09|7.81|+|2|TE_info:AluJb,AluJb_dup120112,Alu,SINE,donor,-,31744514,31744675|None,TPX2|2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.2268981933594	2	407.226885	812.439217	0.048765	1.9858E-05	-0.088662	-3.6106E-05	-0.039898	-1.6247E-05	407.2268285216834	17.371	0.55334	17.371	16.913	17.466	0					26	11	3	0	0	0	0.70055	1	5063	5063		33.516	0	1	418270	+		38133	12482	26137	26228	38600	38600					0.025495403176250875
SSGLLRLNY	9	Unmodified	_SSGLLRLNY_					0	0	0			REV__AluSc_dup26247|chr14:55143427-55143722:-|3.947558539677292|0.0255733500930304|7.27|477.0|17|3|anti-sense	REV__AluSc_dup26247|chr14:55143427-55143722:-|3.947558539677292|0.0255733500930304|7.27|477.0|17|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7835998535156	2	511.785099	1021.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.876	1	35.876	35.376	36.376	0								0	0	0	0.27939	1	12141	12141		39.253	0.44669	1		+		38134	12145	26138	26229	38601	38601					0.04572858817505221
SSGLPQQKPQ	10	Unmodified	_SSGLPQQKPQ_					0	0	0		NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2	NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.19281005859375	3	357.192734	1068.55637	0.48678	0.00017388	-0.33621	-0.00012009	0.15058	5.3785E-05	357.19264997801855	12.125	0.096022	12.125	12.053	12.149	0					8	3	3	0	0	0	0.63019	1	2484	2484		30.569	0.25114	1	207170			38135	5933	26139	26230	38602	38602					0.024836534665837462
SSGNTYFVF	9	Unmodified	_SSGNTYFVF_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant;CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;CCDC180|p.S1054Lfs*19|1|0.44|ENSG00000197816|chr9:97354591-97354591|T/-|frameshift_variant;ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.23443603515625	2	511.234907	1020.45526	1.1291	0.00057722	-0.81724	-0.0004178	0.31182	0.00015941	511.2344505078336	31.428	0.53742	31.428	31.316	31.853	0					68	23	5	0	0	0	0.54267	1	10214	10214		27.882	3.6795	1	1496400			38136	9029	26140	26231	38603	38603					-0.05414798236131446
SSGPASPPR	9	Unmodified	_SSGPASPPR_					0	0	0		KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;ENST00000592092.1_1_19:36224173-36224410:+|nuORF	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.21923828125	2	428.219591	854.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.028	1	16.028	15.528	16.528	0								0	0	0	0.15687	1	3582	3582		58.23	8.7884	1				38137	8088	26141	26232	38604	38604					-0.00840531830533564
SSGPSTPLK	9	Unmodified	_SSGPSTPLK_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant;C2CD5|p.D676Mfs*40|1|0.33|ENSG00000111731|chr12:22474769-22474769|T/-|frameshift_variant	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2373352050781	2	437.23745	872.460347	0.24393	0.00010665	-0.79003	-0.00034543	-0.5461	-0.00023877	437.23712316329426	20.01	0.35003	20.01	19.829	20.179	0					23	10	3	0	0	0	0.27249	1	5262	5262		52.937	5.2794	1	409400			38138	2694	26142	26233	38605	38605					0.01901505626483413
SSGPSTPLK	9	Unmodified	_SSGPSTPLK_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant;C2CD5|p.D676Mfs*40|1|0.33|ENSG00000111731|chr12:22474769-22474769|T/-|frameshift_variant	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2373046875	2	437.23745	872.460347	0.28549	0.00012483	-0.35528	-0.00015534	-0.069789	-3.0514E-05	437.237309371919	20.092	0.2259	20.092	19.932	20.158	0					8	5	2	0	0	0	0.037924	1	5581	5581		101.25	8.0572	1	90174			38139	2694	26142	26233	38606	38606					0.01901505626483413
SSGPSTPLK	9	Unmodified	_SSGPSTPLK_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant;C2CD5|p.D676Mfs*40|1|0.33|ENSG00000111731|chr12:22474769-22474769|T/-|frameshift_variant	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.23724365234375	2	437.23745	872.460347	-0.63255	-0.00027657	-0.0015874	-6.9408E-07	-0.63413	-0.00027727	437.23750870618835	20.092	0.40528	20.092	19.919	20.324	0					20	9	3	0	0	0	0.10506	1	5561	5561		78.264	23.487	1	517680			38140	2694	26142	26233	38607	38607					0.01901505626483413
SSGPSTPLK	9	Unmodified	_SSGPSTPLK_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant;C2CD5|p.D676Mfs*40|1|0.33|ENSG00000111731|chr12:22474769-22474769|T/-|frameshift_variant	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2373046875	2	437.23745	872.460347	-0.56024	-0.00024496	-0.16643	-7.277E-05	-0.72667	-0.00031773	437.2374849055362	20.251	0.36676	20.251	20.044	20.41	0					17	7	3	0	0	0	0.047855	1	6387	6387		96.034	21.779	1	1529200			38141	2694	26142	26233	38608	38608					0.01901505626483413
SSGQAVFLK	9	Unmodified	_SSGQAVFLK_					0	0	0		ENST00000544662.1_1_12:132413858-132416816:+|nuORF	ENST00000544662.1_1_12:132413858-132416816:+|nuORF	ENST00000544662.1_1_12:132413858-132416816:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.76123046875	2	468.761092	935.507631	0.27592	0.00012934	-1.0922	-0.00051198	-0.81628	-0.00038264	468.76066330598127	28.529	0.12877	28.529	28.447	28.575	0					6	3	2	0	0	0	0.04067	1	10104	10104		98.582	34.375	1	132350			38142	10567	26143	26234	38609	38609					0.037297848974731096
SSGQAVFLK	9	Unmodified	_SSGQAVFLK_					0	0	0		ENST00000544662.1_1_12:132413858-132416816:+|nuORF	ENST00000544662.1_1_12:132413858-132416816:+|nuORF	ENST00000544662.1_1_12:132413858-132416816:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7610778808594	2	468.761092	935.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.567	1	28.567	28.067	29.067	0								0	0	0	0.018912	1	10481	10481		101.25	35.787	1				38143	10567	26143	26234	38610	38610					0.037297848974731096
SSGQAVFLK	9	Unmodified	_SSGQAVFLK_					0	0	0		ENST00000544662.1_1_12:132413858-132416816:+|nuORF	ENST00000544662.1_1_12:132413858-132416816:+|nuORF	ENST00000544662.1_1_12:132413858-132416816:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.76092529296875	2	468.761092	935.507631	-0.51714	-0.00024241	0.26831	0.00012577	-0.24883	-0.00011664	468.76109435001626	28.469	0.16687	28.469	28.359	28.526	0					6	3	2	0	0	0	0.16806	1	10329	10329		65.465	4.4934	1	209650			38144	10567	26143	26234	38611	38611					0.037297848974731096
SSGQLRQLL	9	Unmodified	_SSGQLRQLL_					0	0	0			REV__nc|ENSG00000275074|Q6ZVK8-2|NUDT18	REV__nc|ENSG00000275074|Q6ZVK8-2|NUDT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.5296936035156	3	334.529458	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.59	1	15.59	15.09	16.09	0								0	0	0	0.3428	1	3420	3420		26.693	2.1737	1		+		38145	17828	26144	26235	38612	38612					0.06628261191792717
SSGRCYYY	8	Unmodified	_SSGRCYYY_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.70599365234375	2	499.70546	997.396366	-0.19134	-9.5616E-05	1.0798	0.00053957	0.88844	0.00044396	499.70602931372906	36.862	0.32896	36.862	36.74	37.069	0					15	9	2	0	0	0	0.60719	1	13921	13921		47.916	3.3845	1	485770			38146	5785	26145	26236	38613	38613					-0.10243597802138993
SSGSLAAG	8	Unmodified	_SSGSLAAG_					0	0	0		CAPN12|p.R119Gfs*47|1|0.43|ENSG00000182472|chr19:38742481-38742481|G/-|frameshift_variant	CAPN12|p.R119Gfs*47|1|0.43|ENSG00000182472|chr19:38742481-38742481|G/-|frameshift_variant	CAPN12|p.R119Gfs*47|1|0.43|ENSG00000182472|chr19:38742481-38742481|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	649.3163452148438	1	649.315145	648.307869	-0.82135	-0.00053332	3.116	0.0020233	2.2947	0.00149	649.3174067517253	40.351	0.15904	40.351	40.311	40.47	0					11	9	2	0	0	0	0.7764	1	13515	13515		4.6817	0	1	33652			38147	367	26146	26237	38614	38614					-0.030352700502817243
SSGSPKFAMK	10	Unmodified	_SSGSPKFAMK_					0	0	0		MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant;MTA1|p.T578Pfs*18|1|0.07|ENSG00000182979|chr14:105466528-105466528|C/-|frameshift_variant;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENST00000469140.2_1_14:105929892-105933123:+|nuORF	MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant	MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2642822265625	2	520.265684	1038.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.258	1	15.258	14.758	15.758	0								0	0	0	0.4201	1	3287	3287		19.104	4.2386	1				38148	6931	26147	26238	38615	38615					-0.0009018980849759828
SSGSTAIKK	9	Unmodified	_SSGSTAIKK_					0	0	0		ENSG00000131171|ENST00000373212|SH3BGRL;SH3BGRL|p.K19T|1|0.55|ENSG00000131171|chrX:81276994-81276994|A/C|missense_variant	ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.7506103515625	2	439.750724	877.486896	0.59799	0.00026297	-3.1215	-0.0013727	-2.5235	-0.0011097	439.7503160123067	12.551	0.1747	12.551	12.427	12.601	0					11	4	4	0	0	0	0.0406	2	2862	2846;2862		98.629	34.422	1	461930			38149	3705	26148	26239	38616;38617	38617					0.04325194517809905
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.73785400390625	2	441.737617	881.460681	0.29504	0.00013033	-0.25852	-0.0001142	0.036523	1.6134E-05	441.737476063486	20.354	1.0762	20.354	19.492	20.568	0					72	33	3	0	0	0	0.1424	3	5318	5160;5318;5464		69.628	26.489	1	364050			38150	2888	26149	26240	38618;38619;38620	38619					0.015209253463240202
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.7375183105469	2	441.737617	881.460681	-0.29228	-0.00012911	-0.17818	-7.8708E-05	-0.47046	-0.00020782	441.7375189392239	20.583	1.5671	20.583	19.231	20.798	0					73	31	3	0	0	0	0.28897	1	6515	6515		51.193	8.7966	1	805490			38151	2888	26149	26240	38621	38621					0.015209253463240202
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.73681640625	2	441.737617	881.460681	-0.53793	-0.00023762	0.21965	9.7028E-05	-0.31828	-0.0001406	441.73765565970007	20.483	0.95702	20.483	19.703	20.66	0					49	22	3	0	0	0	0.19605	1	5576	5576		62.107	19.711	1	294990			38152	2888	26149	26240	38622	38622					0.015209253463240202
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.73736572265625	2	441.737617	881.460681	-0.52205	-0.00023061	0.16995	7.5073E-05	-0.3521	-0.00015554	441.7376212833489	20.599	1.9119	20.599	18.997	20.909	0					101	38	5	0	0	0	0.056004	3	6579	6222;6413;6579		93.143	39.209	1	2755900			38153	2888	26149	26240	38623;38624;38625	38625					0.015209253463240202
SSGVPTPTK	9	Unmodified	_SSGVPTPTK_					0	0	0		nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB	nc|ENSG00000138101|O60941-6|DTNB	nc|ENSG00000138101|O60941-6|DTNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2376403808594	2	437.23745	872.460347	-0.92568	-0.00040474	0.54661	0.000239	-0.37907	-0.00016574	437.23769287585384	20.061	0.40687	20.061	19.842	20.248	0					30	13	3	0	0	0	0.17854	1	5502	5502		64.207	9.431	1	630800			38154	4229	26150	26241	38626	38626					0.019015056264606756
SSGYFCQPKE	10	Unmodified	_SSGYFCQPKE_					0	0	0			REV__nc|ENSG00000149557|Q99689-2|FEZ1	REV__nc|ENSG00000149557|Q99689-2|FEZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.2520141601562	2	573.250231	1144.48591	2.011	0.0011528	1.0503	0.00060211	3.0613	0.0017549	573.2508516180752	24.254	0.41486	24.254	24.146	24.561	0					21	8	4	0	0	0	0.39566	1	8481	8481		56.721	3.7844	1	2147800	+		38155	15427	26151	26242	38627	38627					-0.08055387913418599
SSGYVAQK	8	Unmodified	_SSGYVAQK_					0	0	0			REV__ENST00000486831.5_1_3:138189538-138191915:+|nuORF	REV__ENST00000486831.5_1_3:138189538-138191915:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.21636962890625	2	420.216517	838.418482	-0.058691	-2.4663E-05	-0.27073	-0.00011376	-0.32942	-0.00013843	420.2163303408278	19.14	0.16343	19.14	19.034	19.197	0					5	3	2	0	0	0	0.63077	1	6009	6009		44.117	1.7207	1	264350	+		38156	19670	26152	26243	38628	38628					-0.007190500620481544
SSHCDQLTGQ	10	Unmodified	_SSHCDQLTGQ_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2294921875	2	538.227288	1074.44002	3.3719	0.0018149	0.39383	0.00021197	3.7657	0.0020268	538.2276902815647	30.755	0.26744	30.755	30.646	30.913	0					14	5	4	0	0	0	0.44601	1	11433	11433		51.193	3.2771	1	1445400			38157	1851	26153	26244	38629	38629					-0.09422033095643201
SSHEKGVP	8	Unmodified	_SSHEKGVP_					0	0	0			REV__ENSG00000120332|ENST00000239462|TNN	REV__ENSG00000120332|ENST00000239462|TNN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.7143249511719	2	420.714142	839.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.496	1	14.496	13.996	14.996	0								0	0	0	1.7419	1	3620	3620		18.324	0	1		+		38158	14279	26154	26245	38630	38630					-0.012399342047956452
SSHGLAAL	8	Unmodified	_SSHGLAAL_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.2058410644531	2	378.205953	754.397353	0.4591	0.00017363	-0.87037	-0.00032918	-0.41128	-0.00015555	378.20566857580894	21.199	0.26211	21.199	21.095	21.357	0					6	5	2	0	0	0	0.79176	1	7008	7008		21.702	0	1	273980			38159	6071	26155	26246	38631	38631					0.01032984629080147
SSHLLEQTLD	10	Unmodified	_SSHLLEQTLD_					0	0	0		INTS4|p.F316L|1|0.46|ENSG00000149262|chr11:77941222-77941222|G/T|missense_variant	INTS4|p.F316L|1|0.46|ENSG00000149262|chr11:77941222-77941222|G/T|missense_variant	INTS4|p.F316L|1|0.46|ENSG00000149262|chr11:77941222-77941222|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7907104492188	2	571.788035	1141.56152	3.3948	0.0019411	1.1496	0.00065732	4.5444	0.0025984	571.7887435738934	15.922	0.31755	15.922	15.865	16.183	0					12	6	2	0	0	0	0.35046	1	4314	4314		61.691	1.573	1	3129800			38160	11226	26156	26247	38632	38632					-0.003600874614676286
SSHLNLKVE	9	Unmodified	_SSHLNLKVE_					0	0	0		nc|ENSG00000106701|Q9BXM9-2|FSD1L;ENSG00000106701|ENST00000481272|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.8570251464844	3	342.857463	1025.55056	-0.060108	-2.0609E-05	-0.82248	-0.00028199	-0.88258	-0.0003026	342.85703575648927	21.253	0.1575	21.253	21.2	21.357	0					5	3	2	0	0	0	0.42902	1	6142	6142		46.457	13.417	1	68469			38161	2456	26157	26248	38633	38633					0.03880554954935178
SSHMVTFEK	9	Unmodified	_SSHMVTFEK_					0	0	0		ENST00000517402.1_1_7:27222251-27222365:-|nuORF	ENST00000517402.1_1_7:27222251-27222365:-|nuORF	ENST00000517402.1_1_7:27222251-27222365:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.255859375	2	533.255317	1064.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.025	1	23.025	22.525	23.525	0								0	0	0	0.16453	1	6603	6603		56.434	22.261	1				38162	10269	26158	26249	38634	38634					-0.033587801881594714
SSHMVTFEK	9	Unmodified	_SSHMVTFEK_					0	0	0		ENST00000517402.1_1_7:27222251-27222365:-|nuORF	ENST00000517402.1_1_7:27222251-27222365:-|nuORF	ENST00000517402.1_1_7:27222251-27222365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.256103515625	2	533.255317	1064.49608	2.3255	0.0012401	-0.84576	-0.000451	1.4797	0.00078906	533.2548966854326	23.316	0.1533	23.316	23.263	23.417	0					8	3	3	0	0	0	0.02953	1	7712	7712		109.48	19.109	1	821060			38163	10269	26158	26249	38635	38635					-0.033587801881594714
SSHMVTFEK	9	Unmodified	_SSHMVTFEK_					0	0	0		ENST00000517402.1_1_7:27222251-27222365:-|nuORF	ENST00000517402.1_1_7:27222251-27222365:-|nuORF	ENST00000517402.1_1_7:27222251-27222365:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2560424804688	2	533.255317	1064.49608	1.1002	0.00058669	0.4191	0.00022349	1.5193	0.00081017	533.2555332011295	23.232	0.16616	23.232	23.162	23.329	0					7	3	3	0	0	0	0.047855	1	7984	7984		96.034	29.604	1	192660			38164	10269	26158	26249	38636	38636					-0.033587801881594714
SSHTLGSTL	9	Unmodified	_SSHTLGSTL_					0	0	0			REV__ENST00000461275.1_1_7:81680257-81714133:-|nuORF	REV__ENST00000461275.1_1_7:81680257-81714133:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.73248291015625	2	451.732532	901.45051	-1.1923	-0.00053861	0.68531	0.00030958	-0.50701	-0.00022903	451.732871563283	25.892	0.4989	25.892	25.655	26.154	0					27	12	3	0	0	0	0.20551	1	8048	8048		60.972	6.2496	1	338700	+		38165	19383	26159	26250	38637	38637					-0.0041568237888895965
SSHVPIQK	8	Unmodified	_SSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2532958984375	2	448.253434	894.492316	-1.1764	-0.00052734	0.41653	0.00018671	-0.7599	-0.00034063	448.25379207737257	16.815	0.17789	16.815	16.699	16.877	0					10	7	2	0	0	0	0.49216	1	4092	4092		60.972	16.855	1	71882			38166	5253	26160	26251	38638	38638					0.04084918100295454
SSHVPIQKK	9	Unmodified	_SSHVPIQKK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.86962890625	3	341.869703	1022.58728	0.67553	0.00023094	-1.0154	-0.00034715	-0.33991	-0.00011621	342.2038075701725	14.576	0.17111	14.576	14.494	14.666	0					9	4	3	0	0	0	0.11898	1	3579	3579		75.043	34.985	1	188810			38167	5253	26161	26252	38639	38639					0.07688851571481337
SSHVPIQKK	9	Unmodified	_SSHVPIQKK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.3007202148438	2	512.300916	1022.58728	0.0059335	3.0397E-06	-0.45655	-0.00023389	-0.45061	-0.00023085	512.3005097303272	14.601	0.21016	14.601	14.483	14.693	0					13	5	3	0	0	0	0.41958	1	3605	3605		32.812	0	1	314450			38168	5253	26161	26252	38640	38640					0.07688851571481337
SSHVPIQKK	9	Unmodified	_SSHVPIQKK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.86956787109375	3	341.869703	1022.58728	1.551	0.00053023	-1.3324	-0.00045552	0.21853	7.4709E-05	341.86917389985246	14.5	0.21792	14.5	14.391	14.609	0					6	4	2	0	0	0	0.18416	1	3635	3635		63.534	12.341	1	143710			38169	5253	26161	26252	38641	38641					0.07688851571481337
SSHVTYSL	8	Unmodified	_SSHVTYSL_					0	0	0			REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.2217102050781	2	447.2218	892.429047	0.8376	0.00037459	-0.68256	-0.00030526	0.15503	6.9335E-05	447.22121497209804	37.895	1.3424	37.895	37.45	38.792	0					33	28	2	0	0	0	0.64096	1	14888	14888		42.474	1.0478	1	106380	+		38170	16036	26162	26253	38642	38642					-0.021470674076226715
SSIAQSIHR	9	Unmodified	_SSIAQSIHR_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;ENST00000463002.2_1_3:62463934-62477992:-|nuORF;nc|ENSG00000163618|Q9ULU8-2|CADPS;CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant;nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS	ENSG00000081803|ENST00000449022|CADPS2;CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7724914550781	2	499.772522	997.530492	-0.64039	-0.00032005	0.52923	0.00026449	-0.11116	-5.5555E-05	499.77300461264525	21.248	0.21184	21.248	21.095	21.307	0					5	4	2	0	0	0	0.24334	1	7033	7033		56.434	1.6575	1	132640			38171	1663;357	26163	26254	38643	38643					0.03162804014937137
SSIDPSLLSTK	11	Unmodified	_SSIDPSLLSTK_					0	0	0		nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;NAV1|p.K1211Efs*5|1|0.68|ENSG00000134369|chr1:201803700-201803701|AA/-|frameshift_variant;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.3143920898438	2	574.313886	1146.61322	1.6502	0.00094774	-0.59847	-0.00034371	1.0517	0.00060403	574.3136691207488	35.755	0.16703	35.755	35.672	35.839	0					6	4	2	0	0	0	0.32196	1	13443	13443		60.167	19.389	1	71574			38172	11532	26164	26255	38644	38644					0.04577656232413574
SSIDPSLLSTK	11	Unmodified	_SSIDPSLLSTK_					0	0	0		nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;NAV1|p.K1211Efs*5|1|0.68|ENSG00000134369|chr1:201803700-201803701|AA/-|frameshift_variant;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.3141479492188	2	574.313886	1146.61322	1.9482	0.0011189	-1.6291	-0.00093559	0.31911	0.00018327	574.3130808069487	35.751	0.22115	35.751	35.637	35.858	0					12	6	3	0	0	0	0.18862	1	13887	13887		75.652	35.779	1	310790			38173	11532	26164	26255	38645	38645					0.04577656232413574
SSIEKTISK	9	Unmodified	_SSIEKTISK_					0	0	0		nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211892|P01861-1|IGHG4	nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211892|P01861|IGHG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7847595214844	2	496.784764	991.554975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.884	1	18.884	18.384	19.384	0								0	0	0	0.0007151	1	5015	5015		140.11	41.483	1				38174	11748	26165	26256	38646	38646					0.05886019377805951
SSIEKTISK	9	Unmodified	_SSIEKTISK_					0	0	0		nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211892|P01861-1|IGHG4	nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211892|P01861|IGHG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7846984863281	2	496.784764	991.554975	0.76938	0.00038222	1.512	0.00075114	2.2814	0.0011334	496.7842957000454	19.149	0.31332	19.149	19.017	19.33	0					16	6	4	0	0	0	0.00065248	1	5979	5979		186.41	64.235	1	1198500			38175	11748	26165	26256	38647	38647					0.05886019377805951
SSIEKTISK	9	Unmodified	_SSIEKTISK_					0	0	0		nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211892|P01861-1|IGHG4	nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211892|P01861|IGHG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.78369140625	2	496.784764	991.554975	0.14809	7.3568E-05	-1.2531	-0.0006225	-1.105	-0.00054893	496.7839562005838	18.953	0.22952	18.953	18.803	19.033	0					6	5	2	0	0	0	0.021015	1	5055	5055		120.31	29.936	1	107900			38176	11748	26165	26256	38648	38648					0.05886019377805951
SSIEKTISK	9	Unmodified	_SSIEKTISK_					0	0	0		nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211892|P01861-1|IGHG4	nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211892|P01861|IGHG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7848815917969	2	496.784764	991.554975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.989	1	18.989	18.489	19.489	0								0	0	0	0.16368	1	5067	5067		56.632	13.768	1				38177	11748	26165	26256	38649	38649					0.05886019377805951
SSIEKTISK	9	Unmodified	_SSIEKTISK_					0	0	0		nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211892|P01861-1|IGHG4	nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211892|P01861|IGHG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7845458984375	2	496.784764	991.554975	2.8931	0.0014372	-0.42539	-0.00021133	2.4677	0.0012259	496.7831290046473	19.098	0.21471	19.098	19.014	19.229	0					13	4	4	0	0	0	0.0034376	1	5840	5840		166.07	53.66	1	1221100			38178	11748	26165	26256	38650	38650					0.05886019377805951
SSIFAALAALG	11	Unmodified	_SSIFAALAALG_					0	0	0			REV__ENSG00000112992|ENST00000344920|NNT	REV__ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7723693847656	2	510.78985	1019.56515	0.98547	0.00050337	-0.84461	-0.00043142	0.14085	7.1946E-05	510.78944881129934	40.149	0.37849	40.149	40.012	40.39	0					42	15	4	0	0	0	0.48922	1	15270	15270		27.882	0	1	1107000	+		38179	14021	26166	26257	38651	38651					0.05614627103034309
SSIGPGLNL	9	Unmodified	_SSIGPGLNL_					0	0	0		ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENST00000426861.5_1_17:56598198-56599363:-|nuORF	ENST00000577440.5_1_17:56598198-56609324:-|nuORF	ENST00000577440.5_1_17:56598198-56609324:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2400207519531	2	429.239993	856.465432	0.18199	7.8116E-05	-0.16381	-7.0313E-05	0.018178	7.8029E-06	429.23992513610756	19.5	0.53682	19.5	19.369	19.906	0					21	12	2	0	0	0	0.20551	1	5464	5464		60.972	9.6365	1	210320			38180	10840	26167	26258	38652	38652					0.031458094890695065
SSIGSILKPY	10	Unmodified	_SSIGSILKPY_					0	0	0			REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.803466796875	2	532.802957	1063.59136	1.7166	0.00091463	-0.47777	-0.00025456	1.2389	0.00066007	532.8027149862264	40.082	0.29713	40.082	39.929	40.226	0					15	10	2	0	0	0	0.50881	1	15792	15792		44.377	1.5129	1	156320	+		38181	22084	26168	26259	38653	38653					0.062108962745242025
SSIKDLVLK	9	Unmodified	_SSIKDLVLK_					0	0	0		nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1	nc|ENSG00000014123|O94874-2|UFL1	nc|ENSG00000014123|O94874-2|UFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.81298828125	2	501.813325	1001.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.181	1	33.181	32.681	33.681	0								0	0	0	0.14211	1	12248	12248		61.691	10.356	1				38182	1072	26169	26260	38654	38654					0.11135486654166016
SSILPAGFKP	10	Unmodified	_SSILPAGFKP_					0	0	0		G2E3|p.P643L|1|0.23|ENSG00000092140|chr14:30616341-30616341|C/T|missense_variant	G2E3|p.P643L|1|0.23|ENSG00000092140|chr14:30616341-30616341|C/T|missense_variant	G2E3|p.P643L|1|0.23|ENSG00000092140|chr14:30616341-30616341|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2935485839844	2	508.792392	1015.57023	-0.54623	-0.00027792	0.94364	0.00048012	0.39741	0.0002022	508.7929397493033	42.407	0.27174	42.407	42.317	42.588	0					27	16	2	0	0	0	0.54197	1	13968	13968		40.778	0.20554	1	73331			38183	11151	26170	26261	38655	38655					0.06306930965661195
SSINEARINAK	11	Unmodified	_SSINEARINAK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;PDCD4|p.N66Rfs*26|1|0.07|ENSG00000150593|chr10:110881385-110881386|-/GAGAG|frameshift_variant	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.8278198242188	2	601.828026	1201.6415	-0.58378	-0.00035134	0.72615	0.00043702	0.14237	8.5681E-05	601.8286000337675	20.194	0.10038	20.194	20.12	20.221	0					5	3	2	0	0	0	0.27742	1	5604	5604		65.157	17.5	1	107940			38184	4928	26171	26262	38656	38656					0.04874398932361146
SSINSRFAK	9	Unmodified	_SSINSRFAK_					0	0	0		ENST00000471049.5_1_10:99197505-99205308:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.274658203125	2	505.274898	1008.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.776	1	19.776	19.276	20.276	0								0	0	0	0.13425	1	5180	5180		63.534	12.198	1				38185	6291	26172	26263	38657	38657					0.031316881577026834
SSINSRFAK	9	Unmodified	_SSINSRFAK_					0	0	0		ENST00000471049.5_1_10:99197505-99205308:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2751159667969	2	505.274898	1008.53524	-0.048966	-2.4741E-05	0.042504	2.1476E-05	-0.0064619	-3.265E-06	505.2750950623845	20.104	0.18959	20.104	20.005	20.195	0					8	4	3	0	0	0	0.022525	1	6194	6194		117.81	38.098	1	579890			38186	6291	26172	26263	38658	38658					0.031316881577026834
SSINTLVTK	9	Unmodified	_SSINTLVTK_					0	0	0		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.77880859375	2	481.779482	961.544411	-0.62366	-0.00030047	-0.7005	-0.00033749	-1.3242	-0.00063795	481.7791085147881	27.918	0.16304	27.918	27.813	27.976	0					5	3	2	0	0	0	0.21419	1	10064	10064		59.931	5.2084	1	165670			38187	3770	26173	26264	38659	38659					0.062100367233938414
SSIQGQWPK	9	Unmodified	_SSIQGQWPK_					0	0	0		nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant	nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.770263671875	2	515.769448	1029.52434	0.21949	0.00011321	0.57953	0.00029891	0.79903	0.00041211	515.7698731891636	28.454	0.44142	28.454	28.266	28.708	0					23	17	2	0	0	0	0.25716	1	8849	8849		54.776	10.66	1	65008			38188	1268	26174	26265	38660	38660					0.010762857834151873
SSIQGQWPK	9	Unmodified	_SSIQGQWPK_					0	0	0		nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant	nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-4|ARID4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.779296875	2	515.769448	1029.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.541	1	28.541	28.041	29.041	0								0	0	0	0.18541	1	10097	10097		53.089	10.225	1				38189	1268	26174	26265	38661	38661					0.010762857834151873
SSIQGQWPK	9	Unmodified	_SSIQGQWPK_					0	0	0		nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant	nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-4|ARID4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7701416015625	2	515.769448	1029.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.62	1	28.62	28.12	29.12	0								0	0	0	0.061959	1	10134	10134		82.75	0.50997	1				38190	1268	26174	26265	38662	38662					0.010762857834151873
SSIQGQWPK	9	Unmodified	_SSIQGQWPK_					0	0	0		nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant	nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7703247070312	2	515.769448	1029.52434	-1.5407	-0.00079463	3.1601	0.0016299	1.6194	0.00083525	515.7712399522565	28.484	0.57826	28.484	28.132	28.71	0					23	14	2	0	0	0	0.28897	1	9430	9430		51.193	8.3284	1	104770			38191	1268	26174	26265	38663	38663					0.010762857834151873
SSIQGQWPK	9	Unmodified	_SSIQGQWPK_					0	0	0		nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant	nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-4|ARID4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7701416015625	2	515.769448	1029.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.66	1	28.66	28.16	29.16	0								0	0	0	0.17415	1	10410	10410		54.722	3.3869	1				38192	1268	26174	26265	38664	38664					0.010762857834151873
SSIQNEIPKK	10	Unmodified	_SSIQNEIPKK_					0	0	0		ENSG00000009780|ENST00000373954|FAM76A;nc|ENSG00000009780|Q8TAV0-3|FAM76A	ENSG00000009780|ENST00000373954|FAM76A	ENSG00000009780|ENST00000373954|FAM76A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.8852844238281	3	381.883789	1142.62954	3.2324	0.0012344	0.86965	0.0003321	4.1021	0.0015665	381.8842025461809	14.842	0.56925	14.842	14.728	15.297	0					20	11	4	0	0	0	0.63019	1	3795	3795		30.569	0	1	554650			38193	1029	26175	26266	38665	38665					0.06392782189186619
SSIQQGNIHN	10	Unmodified	_SSIQQGNIHN_					0	0	0		L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|36|3|sense	L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|36|3|sense	L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|36|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.273193359375	2	549.270344	1096.52613	3.7822	0.0020774	0.56549	0.00031061	4.3477	0.002388	549.2705943863867	36.354	0.71361	36.354	36.098	36.812	0					34	14	3	0	0	0	0.17732	1	14111	14111		82.241	2.5279	1	3735400			38194	11284	26176	26267	38666	38666					-0.01826705198595846
SSIRAKLGQY	10	Unmodified	_SSIRAKLGQY_					0	0	0			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.8170166015625	2	561.81693	1121.61931	1.2739	0.00071569	-1.1813	-0.00066367	0.092587	5.2017E-05	561.8161573185711	30.147	0.2409	30.147	30.051	30.292	0					12	8	2	0	0	0	0.55603	1	9576	9576		39.253	2.0937	1	112430	+		38195	13071	26177	26268	38667	38667					0.06336219254603748
SSIRAKLGQY	10	Unmodified	_SSIRAKLGQY_					0	0	0			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.81640625	2	561.81693	1121.61931	-0.93794	-0.00052695	0.39047	0.00021937	-0.54748	-0.00030758	561.8170961450486	30.216	0.15669	30.216	30.133	30.29	0					11	4	3	0	0	0	0.64162	1	10266	10266		29.17	1.2878	1	207260	+		38196	13071	26177	26268	38668	38668					0.06336219254603748
SSIREAISK	9	Unmodified	_SSIREAISK_					0	0	0		ENSG00000196670|ENST00000502412|ZFP62;nc|ENSG00000278970|Q8NB50-3|ZFP62;nc|ENSG00000278970|Q8NB50-2|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.78240966796875	2	495.782556	989.550559	1.4748	0.0007312	-0.6586	-0.00032652	0.81624	0.00040468	495.78225507990663	20.508	0.10313	20.508	20.444	20.547	0					6	3	2	0	0	0	0.13907	1	5493	5493		70.399	1.5524	1	95558			38197	7392	26178	26269	38669	38669					0.05536554954892381
SSIREAISK	9	Unmodified	_SSIREAISK_					0	0	0		ENSG00000196670|ENST00000502412|ZFP62;nc|ENSG00000278970|Q8NB50-3|ZFP62;nc|ENSG00000278970|Q8NB50-2|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7825012207031	2	495.782556	989.550559	0.53725	0.00026636	-1.1425	-0.00056642	-0.60522	-0.00030006	495.7819642817827	20.825	0.20604	20.825	20.714	20.92	0					7	4	2	0	0	0	0.024312	1	6515	6515		114.86	28.996	1	1142000			38198	7392	26178	26269	38670	38670					0.05536554954892381
SSIREAISK	9	Unmodified	_SSIREAISK_					0	0	0		ENSG00000196670|ENST00000502412|ZFP62;nc|ENSG00000278970|Q8NB50-3|ZFP62;nc|ENSG00000278970|Q8NB50-2|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	ENSG00000196670|ENST00000502412|ZFP62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.78228759765625	2	495.782556	989.550559	-0.037092	-1.839E-05	-0.52551	-0.00026054	-0.56261	-0.00027893	495.78229108195205	20.738	0.16863	20.738	20.629	20.798	0					7	3	3	0	0	0	0.014648	1	6776	6776		131.12	29.656	1	1347500			38199	7392	26178	26269	38671	38671					0.05536554954892381
SSIRFCFY	8	Unmodified	_SSIRFCFY_					0	0	0			REV__ENST00000412716.7_1_12:51636854-51636992:+|nuORF	REV__ENST00000412716.7_1_12:51636854-51636992:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.74365234375	2	511.741845	1021.46914	1.4043	0.00071863	0.86987	0.00044515	2.2741	0.0011638	511.742636286005	41.151	0.17989	41.151	41.06	41.24	0					6	4	2	0	0	0	0.57802	1	16361	16361		52.299	5.5327	1	41522	+		38200	19011	26179	26270	38672	38672					-0.04073844008701144
SSIRHMIRK	9	Unmodified	_SSIRHMIRK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.3274536132812	2	564.326942	1126.63933	0.36881	0.00020813	-0.045979	-2.5947E-05	0.32283	0.00018218	564.3270750865897	17.578	0.72631	17.578	17.527	18.254	0					41	17	4	0	0	0	0.17854	1	4989	4989		64.207	3.2353	1	2370400			38201	2517	26180	26271	38673	38673					0.0810769171357606
SSIRHMIRK	9	Unmodified	_SSIRHMIRK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	376.55364990234375	3	376.55372	1126.63933	0.67548	0.00025436	-1.7114	-0.00064445	-1.036	-0.00039009	376.55332752478176	17.57	1.4104	17.57	17.351	18.761	0					85	28	4	0	0	0	0.0792	1	5237	5237		112.41	68.034	1	6035700			38202	2517	26180	26271	38674	38674					0.0810769171357606
SSIRHMIRK	9	Unmodified	_SSIRHMIRK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5535888671875	3	376.55372	1126.63933	0.70803	0.00026661	-2.1578	-0.00081251	-1.4497	-0.0005459	376.5532209750313	17.524	1.3927	17.524	17.326	18.719	0					85	28	4	0	0	0	0.35021	1	5080	5080		90.601	46.224	1	7010400			38203	2517	26180	26271	38675	38675					0.0810769171357606
SSIRHMIRK	9	Oxidation (M)	_SSIRHM(Oxidation (M))IRK_		SSIRHM(1)IRK		SSIRHM(58)IRK	0	0	1		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.88525390625	3	381.885358	1142.63425	0.42276	0.00016145	-0.79785	-0.00030469	-0.37509	-0.00014324	381.88512189667256	14.856	0.5089	14.856	14.78	15.289	0					17	10	2	0	0	0	0.22837	1	3947	3947		58.23	24.308	1	1235300			38204	2517	26180	26272	38676	38676		108			0.06863387850967229
SSIRHMIRK	9	Oxidation (M)	_SSIRHM(Oxidation (M))IRK_		SSIRHM(1)IRK		SSIRHM(58)IRK	0	0	1		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.8853759765625	3	381.885358	1142.63425	0.62353	0.00023812	-0.978	-0.00037348	-0.35446	-0.00013536	381.8851393384824	14.851	0.41649	14.851	14.745	15.162	0					20	8	4	0	0	0	0.22837	1	3775	3775		58.23	7.0372	1	1157800			38205	2517	26180	26272	38677	38677		108			0.06863387850967229
SSIRRHRI	8	Unmodified	_SSIRRHRI_					0	0	0		nc|ENSG00000257591|Q96I27|ZNF625;ENSG00000257591|ENST00000439556|ZNF625	nc|ENSG00000257591|Q96I27|ZNF625	nc|ENSG00000257591|Q96I27|ZNF625	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.2095947265625	3	342.208941	1023.60499	1.5472	0.00052945	0.7673	0.00026258	2.3145	0.00079203	342.2090876630345	20.984	0.51181	20.984	20.875	21.387	0					21	10	4	0	0	0	0.7914	1	6797	6797		24.203	0	1	810040			38206	8034	26181	26273	38678	38678					0.09413611616980688
SSISIAWNK	9	Unmodified	_SSISIAWNK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.270263671875	2	503.271824	1004.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.651	1	14.651	14.151	15.151	0								0	0	0	0.35507	1	3143	3143		24.203	0	1				38207	5134;11594	26182	26274	38679	38679					0.02701169926183411
SSISRQLLK	9	Unmodified	_SSISRQLLK_					0	0	0			REV__ENST00000518711.1_1_8:48641465-48642165:+|nuORF	REV__ENST00000518711.1_1_8:48641465-48642165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.3143920898438	2	516.314023	1030.61349	0.57626	0.00029753	0.11529	5.9528E-05	0.69155	0.00035706	516.3140372556317	55.316	0.28489	55.316	55.218	55.503	0					37	18	3	0	0	0	0.61124	1	16673	16673		6.7355	6.7355	1	388660	+		38208	16006	26183	26275	38680	38680					0.09941120742928433
SSIVLTTYF	9	Unmodified	_SSIVLTTYF_					0	0	0			REV__OR52K2|p.V257L|1|0.24|ENSG00000181963|chr11:4450108-4450108|G/T|missense_variant	REV__OR52K2|p.V257L|1|0.24|ENSG00000181963|chr11:4450108-4450108|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7796630859375	2	515.776408	1029.53826	3.2589	0.0016809	3.2642	0.0016836	6.5231	0.0033644	515.7779186676291	28.435	0.41965	28.435	28.075	28.495	0					12	8	3	0	0	0	0.22377	1	10312	10312		58.782	4.0056	1	711420	+		38209	21320	26184	26276	38681	38681					0.02467518491835108
SSKAGFTTIYK	11	Unmodified	_SSKAGFTTIYK_					0	0	0		nc|ENSG00000108231|O95970-3|LGI1;ENSG00000108231|ENST00000371418|LGI1	nc|ENSG00000108231|O95970-3|LGI1	nc|ENSG00000108231|O95970-3|LGI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.550537109375	3	401.552039	1201.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.795	1	14.795	14.295	15.295	0								0	0	0	0.094259	1	3761	3761		77.533	0	1				38210	2519	26185	26277	38682	38682					0.04153666331944805
SSKDAIKK	8	Unmodified	_SSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7607116699219	2	438.761092	875.507631	0.5895	0.00025865	-1.1882	-0.00052133	-0.59868	-0.00026268	438.76070439224236	11.885	0.14683	11.885	11.773	11.92	0					7	5	2	0	0	0	0.28299	1	2368	2368		88.177	20.683	1	293440			38211	6381	26186	26278	38683	38683					0.06489784897462414
SSKDAIKK	8	Unmodified	_SSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.7607116699219	2	438.761092	875.507631	-0.98366	-0.00043159	0.31703	0.0001391	-0.66663	-0.00029249	438.7611713172276	11.674	0.10196	11.674	11.618	11.72	0					6	3	2	0	0	0	0.22389	1	2258	2258		127.46	34.266	1	494700			38212	6381	26186	26278	38684	38684					0.06489784897462414
SSKDAIKK	8	Unmodified	_SSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.7608337402344	2	438.761092	875.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.646	1	11.646	11.146	12.146	0								0	0	0	1.7419	1	2219	2219		93.143	21.266	1				38213	6381	26186	26278	38685	38685					0.06489784897462414
SSKDAIKK	8	Unmodified	_SSKDAIKK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;DSTN|p.Y117H|1|0.26|ENSG00000125868|chr20:17604592-17604592|T/C|missense_variant;ENST00000400899.2_1_1:11051144-11051557:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.7607421875	2	438.761092	875.507631	0.67451	0.00029595	-1.2652	-0.00055512	-0.59069	-0.00025917	438.7603899659526	11.893	0.36416	11.893	11.784	12.148	0					14	10	2	0	0	0	0.2771	1	2381	2381		145.16	22.98	1	2469700			38214	6381	26186	26278	38686	38686					0.06489784897462414
SSKDIKIG	8	Unmodified	_SSKDIKIG_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.2472839355469	2	424.247818	846.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.344	1	20.344	19.844	20.844	0								0	0	0	1.7419	1	6297	6297		68.787	2.9837	1				38215	23043	26187	26279	38687	38687					0.05170096006145286
SSKFKLRE	8	Unmodified	_SSKFKLRE_					0	0	0			REV__TRIM44|p.D247N|1|0.45|ENSG00000166326|chr11:35685328-35685328|G/A|missense_variant	REV__TRIM44|p.D247N|1|0.45|ENSG00000166326|chr11:35685328-35685328|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.19415283203125	3	332.194186	993.56073	0.6475	0.0002151	-0.85827	-0.00028511	-0.21077	-7.0017E-05	332.1938757106068	29.617	0.38224	29.617	29.485	29.867	0					21	9	4	0	0	0	0.58597	1	10588	10588		62.107	21.329	1	1183200	+		38216	16108	26188	26280	38688	38688					0.06369162680130103
SSKGPDVAY	9	Unmodified	_SSKGPDVAY_					0	0	0		COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant;COL5A1|p.P870Qfs*204|1|0.5|ENSG00000130635|chr9:134786009-134786009|C/-|frameshift_variant;COL5A1|p.K933Rfs*141|1|0.32|ENSG00000130635|chr9:134795309-134795309|C/-|frameshift_variant;COL5A1|p.G997Afs*77|1|0.22|ENSG00000130635|chr9:134801983-134801983|C/-|frameshift_variant;COL5A1|p.G997Rfs*17|1|0.4|ENSG00000130635|chr9:134801982-134801983|-/C|frameshift_variant;COL5A1|p.D1172Tfs*104|1|0.22|ENSG00000130635|chr9:134810290-134810290|G/-|frameshift_variant;ENST00000464187.1_1_9:137545303-137583524:+|nuORF;COL5A1|p.E361Rfs*197|1|0.21|ENSG00000130635|chr9:134730388-134730388|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;COL5A1|p.G1351Efs*137|2|0.4|ENSG00000130635|chr9:134815605-134815605|C/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.22802734375	2	462.227082	922.439611	-0.23927	-0.0001106	0.25942	0.00011991	0.020152	9.3149E-06	462.2278498610892	23.936	0.29905	23.936	23.794	24.093	0					9	7	2	0	0	0	0.22377	1	7393	7393		58.782	2.0609	1	35367			38217	612;3654;611	26189	26281	38689	38689					-0.02471084753199193
SSKGPKRLE	9	Unmodified	_SSKGPKRLE_					0	0	0		ENSG00000101134|ENST00000262593|DOK5	ENSG00000101134|ENST00000262593|DOK5	ENSG00000101134|ENST00000262593|DOK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.52947998046875	3	334.529458	1000.56654	0.51923	0.0001737	-0.61898	-0.00020707	-0.099755	-3.3371E-05	334.52932094401933	15.529	1.2651	15.529	15.397	16.662	0					63	30	5	0	0	0	0.13267	1	4014	4014		71.877	6.4121	1	51168000			38218	2092	26190	26282	38690	38690					0.06628261191804086
SSKGPKRLE	9	Unmodified	_SSKGPKRLE_					0	0	0		ENSG00000101134|ENST00000262593|DOK5	ENSG00000101134|ENST00000262593|DOK5	ENSG00000101134|ENST00000262593|DOK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.5294189453125	3	334.529458	1000.56654	-1.9071	-0.00063797	1.3798	0.00046159	-0.52725	-0.00017638	334.53004360702005	15.3	0.24495	15.3	15.226	15.471	0					16	7	4	0	0	0	0.13267	1	3389	3389		71.877	13.631	1	19085000			38219	2092	26190	26282	38691	38691					0.06628261191804086
SSKGVGGK	8	Unmodified	_SSKGVGGK_					0	0	0			REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.7085266113281	2	360.205953	718.397353	0.48247	0.00017379	1.0271	0.00036998	1.5096	0.00054377	360.20617595412165	48.326	0.34149	48.326	48.139	48.48	0					38	21	2	0	0	0	0.78751	1	17573	17573		12.207	0	1	150630	+		38220	22207	26191	26283	38692	38692					0.02688984629105562
SSKIKSTKL	9	Unmodified	_SSKIKSTKL_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.8152770996094	2	496.310949	990.607345	2.8722	0.0014255	0.93914	0.0004661	3.8113	0.0018916	496.3113996762802	46.731	0.28045	46.731	46.631	46.912	0					32	13	3	0	0	0	0.34452	1	18668	18668		46.457	9.2977	1	646030	+		38221	14297	26192	26284	38693	38693					0.11166602511411838
SSKKEELE	8	Unmodified	_SSKKEELE_					0	0	0			REV__ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;REV__ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	REV__ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2478942871094	2	475.245472	948.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.654	1	12.654	12.154	13.154	0								0	0	0	1.7419	1	2745	2745		68.787	1.2932	1		+		38222	15967;20756	26193	26285	38694	38694					9.167072721538716E-05
SSKKSTALSR	10	Unmodified	_SSKKSTALSR_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.54150390625	3	355.540134	1063.59857	1.4391	0.00051164	2.5012	0.00088928	3.9403	0.0014009	355.5409356734511	15.475	0.31578	15.475	15.37	15.686	0					8	6	2	0	0	0	0.71484	1	4252	4252		14.086	0.57807	1	1685200			38223	7574	26194	26286	38695	38695					0.06931628874917806
SSKKTAVS	8	Unmodified	_SSKKTAVS_					0	0	0		DCUN1D1|p.E23K|1|0.41|ENSG00000043093|chr3:182965690-182965690|C/T|missense_variant	DCUN1D1|p.E23K|1|0.41|ENSG00000043093|chr3:182965690-182965690|C/T|missense_variant	DCUN1D1|p.E23K|1|0.41|ENSG00000043093|chr3:182965690-182965690|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.2327880859375	2	404.232168	806.449782	3.1324	0.0012662	-1.2425	-0.00050226	1.8899	0.00076394	404.2315394501319	47.7	0.17622	47.7	47.623	47.799	0					15	9	2	0	0	0	0.7887	1	19011	19011		12.959	0	1	164050			38224	755	26195	26287	38696	38696					0.03881522972039875
SSKKVTSA	8	Unmodified	_SSKKVTSA_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.2330017089844	2	404.232168	806.449782	3.1322	0.0012661	-1.6763	-0.00067762	1.4559	0.00058851	404.2313215278401	49.027	0.29344	49.027	48.934	49.228	0					27	17	2	0	0	0	0.79426	1	19433	19433		16.473	0	1	146790	+		38225	17143	26196	26288	38697	38697					0.038815229720512434
SSKLKEKGYY	10	Unmodified	_SSKLKEKGYY_					0	0	0		tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.5510559082031	3	401.552039	1201.63429	-0.12739	-5.1155E-05	-2.9227	-0.0011736	-3.0501	-0.0012248	401.55080128097757	14.641	0.1241	14.641	14.572	14.696	0					7	4	2	0	0	0	0.65051	1	3142	3142		28.081	2.0181	1	73524			38226	23009	26197	26289	38698	38698					0.041536663319675426
SSKLLQARV	9	Unmodified	_SSKLLQARV_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant;DOCK8|p.P952Qfs*24|1|0.35|ENSG00000107099|chr9:386404-386404|C/-|frameshift_variant;DOCK8|p.M1114Yfs*4|1|0.4|ENSG00000107099|chr9:405014-405015|-/T|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.5417785644531	3	334.541586	1000.60293	0.2515	8.4136E-05	-0.46641	-0.00015603	-0.21492	-7.1899E-05	334.5416041920465	14.269	0.13433	14.269	14.177	14.311	0					8	5	2	0	0	0	0.53064	1	2929	2929		29.17	0	1	111980			38227	2469	26198	26290	38699	38699					0.10265138088504955
SSKLNSVATA	10	Unmodified	_SSKLNSVATA_					0	0	0		ZNF703|p.A115T|1|0.54|ENSG00000183779|chr8:37697244-37697244|G/A|missense_variant	ZNF703|p.A115T|1|0.54|ENSG00000183779|chr8:37697244-37697244|G/A|missense_variant	ZNF703|p.A115T|1|0.54|ENSG00000183779|chr8:37697244-37697244|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.51348876953125	3	326.513585	976.518924	0.0080808	2.6385E-06	-0.035706	-1.1659E-05	-0.027625	-9.02E-06	326.5135207041184	13.068	0.10192	13.068	12.978	13.08	0					6	2	3	0	0	0	0.39566	1	2931	2931		78.264	14.057	1	291420			38228	23172	26199	26291	38700	38700					0.029725622009436847
SSKLSEKS	8	Unmodified	_SSKLSEKS_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.23480224609375	2	433.234907	864.455261	0.19025	8.2424E-05	-0.4016	-0.00017399	-0.21135	-9.1565E-05	433.23482173046534	21.547	0.143	21.547	21.484	21.627	0					7	5	2	0	0	0	0.51384	1	5958	5958		58.782	4.0056	1	90756			38229	5001	26200	26292	38701	38701					0.017612017638612087
SSKLSEKS	8	Unmodified	_SSKLSEKS_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.2354431152344	2	433.234907	864.455261	3.2383	0.001403	-3.7801	-0.0016377	-0.54182	-0.00023473	433.23343816504337	21.58	0.070887	21.58	21.553	21.624	0					4	2	2	0	0	0	0.63077	1	6227	6227		44.117	13.613	1	30177			38230	5001	26200	26292	38702	38702					0.017612017638612087
SSKRKWSS	8	Unmodified	_SSKRKWSS_					0	0	0			REV__ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	REV__ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.5102233886719	3	322.510286	964.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.882	1	14.882	14.382	15.382	0								0	0	0	1.7419	1	3803	3803		23.042	0	1		+		38231	12210	26201	26293	38703	38703					0.02535418986235527
SSKSQTEVPK	10	Unmodified	_SSKSQTEVPK_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7911987304688	2	545.790578	1089.5666	0.41218	0.00022496	0.38419	0.00020969	0.79637	0.00043465	545.790715528186	14.729	0.29827	14.729	14.522	14.82	0					17	7	4	0	0	0	0.0043426	1	3637	3637		167.93	61.25	1	2153800			38232	4850	26202	26294	38704	38704					0.0254021640114388
SSKSQTEVPK	10	Unmodified	_SSKSQTEVPK_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.791015625	2	545.790578	1089.5666	0.33213	0.00018127	0.54223	0.00029594	0.87436	0.00047722	545.7909307470213	14.671	0.20589	14.671	14.525	14.731	0					12	4	4	0	0	0	0.09653	1	3848	3848		96.034	18.716	1	1044800			38233	4850	26202	26294	38705	38705					0.0254021640114388
SSKSVHLSQP	10	Unmodified	_SSKSVHLSQP_					0	0	0			REV__ENST00000407184.5_2_7:5024574-5087708:+|nuORF	REV__ENST00000407184.5_2_7:5024574-5087708:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.19305419921875	3	357.192734	1068.55637	-0.89291	-0.00031894	0.99733	0.00035624	0.10442	3.7299E-05	357.1931405721577	11.887	0.068487	11.887	11.831	11.9	0					8	4	3	0	0	0	0.62149	1	2324	2324		31.634	3.5528	1	86042	+		38234	18979	26203	26295	38706	38706					0.024836534665837462
SSLAFLNLT	9	Unmodified	_SSLAFLNLT_					0	0	0		nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-3|TLR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.5135803222656	3	322.514925	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.778	1	12.778	12.278	13.278	0								0	0	0	0.40728	1	2805	2805		8.6937	0.45861	1				38235	4121	26204	26296	38707	38707					0.039266516946554475
SSLAGPLWY	9	Unmodified	_SSLAGPLWY_					0	0	0			REV__ENST00000228928.11_1_12:113408122-113408299:+|nuORF	REV__ENST00000228928.11_1_12:113408122-113408299:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2534484863281	2	497.255643	992.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.012	1	29.012	28.512	29.512	0								0	0	0	0.25856	1	9410	9410		42.474	3.2216	1		+		38236	17907	26205	26297	38708	38708					0.00018382523182935984
SSLAIAFAQL	10	Unmodified	_SSLAIAFAQL_					0	0	0			REV__nc|ENSG00000112041|O00294-2|TULP1	REV__nc|ENSG00000112041|O00294-2|TULP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.7897033691406	2	510.78985	1019.56515	-0.11953	-6.1054E-05	0.15098	7.7121E-05	0.031456	1.6067E-05	510.79008826748725	39.854	0.16948	39.854	39.748	39.917	0					14	10	2	0	0	0	0.50287	1	12915	12915		25.574	0	1	75220	+		38237	13990	26206	26298	38709	38709					0.056146271030456774
SSLAKQLLD	9	Unmodified	_SSLAKQLLD_					0	0	0			REV__ENST00000295767.9_1_3:14154259-14154349:-|nuORF	REV__ENST00000295767.9_1_3:14154259-14154349:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.77978515625	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.466	1	35.466	34.966	35.966	0								0	0	0	0.14033	1	12637	12637		62.107	5.6736	1		+		38238	18176	26207	26299	38710	38710					0.056580367233777906
SSLAVVQAQ	9	Unmodified	_SSLAVVQAQ_					0	0	0			REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.75103759765625	2	451.750724	901.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.174	1	20.174	19.674	20.674	0								0	0	0	0.10826	1	5622	5622		69.628	3.1983	1		+		38239	12079	26208	26300	38711	38711					0.03221194517800541
SSLCRTKE	8	Unmodified	_SSLCRTKE_					0	0	0		ENST00000312561.8_2_12:32112396-32113780:+|nuORF	ENST00000312561.8_2_12:32112396-32113780:+|nuORF	ENST00000312561.8_2_12:32112396-32113780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2339782714844	2	462.234384	922.454216	-0.80126	-0.00037037	-0.13225	-6.1131E-05	-0.93351	-0.0004315	462.2344335536418	20.061	0.15768	20.061	20.004	20.162	0					10	5	3	0	0	0	0.39125	1	5543	5543		71.877	2.2498	1	245460			38240	8564	26209	26301	38712	38712					-0.010113358767057434
SSLDVNVLK	9	Unmodified	_SSLDVNVLK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7793273925781	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.697	1	35.697	35.197	36.197	0								0	0	0	0.012693	1	13405	13405		106.68	39.189	1				38241	6773	26210	26302	38713	38713					0.05658036723366422
SSLDVNVLK	9	Unmodified	_SSLDVNVLK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.77972412109375	2	487.779482	973.544411	-0.081339	-3.9675E-05	0.16	7.8046E-05	0.078663	3.837E-05	487.77971536146123	35.663	0.15041	35.663	35.579	35.73	0					10	4	3	0	0	0	0.032052	1	13841	13841		107.01	30.233	1	182380			38242	6773	26210	26302	38714	38714					0.05658036723366422
SSLDVNVLK	9	Unmodified	_SSLDVNVLK_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7794189453125	2	487.779482	973.544411	-0.53095	-0.00025898	0.80273	0.00039156	0.27179	0.00013257	487.7795128354264	35.594	0.31704	35.594	35.484	35.801	0					11	6	2	0	0	0	0.026848	1	13765	13765		112.11	32.656	1	309680			38243	6773	26210	26302	38715	38715					0.05658036723366422
SSLDVSLQK	9	Unmodified	_SSLDVSLQK_					0	0	0		CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant;nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ	CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7689208984375	2	488.769114	975.523675	0.76471	0.00037377	-1.2309	-0.00060164	-0.46621	-0.00022787	488.76852837438395	29.698	0.25231	29.698	29.57	29.823	0					10	6	2	0	0	0	0.10506	1	10645	10645		78.264	22.76	1	557770			38244	473	26211	26303	38716	38716					0.03493446343713913
SSLDVSLQK	9	Unmodified	_SSLDVSLQK_					0	0	0		CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant;nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ	CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7684326171875	2	488.769114	975.523675	-1.2499	-0.00061093	0.67081	0.00032787	-0.57914	-0.00028306	488.76945113813946	29.459	0.16662	29.459	29.377	29.543	0					11	6	2	0	0	0	0.18416	1	9589	9589		63.534	3.4156	1	165420			38245	473	26211	26303	38717	38717					0.03493446343713913
SSLDVSLQK	9	Unmodified	_SSLDVSLQK_					0	0	0		CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant;nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ	CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.76885986328125	2	488.769114	975.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.735	1	29.735	29.235	30.235	0								0	0	0	0.040385	1	11042	11042		90.601	20.973	1				38246	473	26211	26303	38718	38718					0.03493446343713913
SSLFQAPAL	9	Unmodified	_SSLFQAPAL_					0	0	0			REV__nc|ENSG00000196739|Q8IZC6-3|COL27A1	REV__nc|ENSG00000196739|Q8IZC6-3|COL27A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2569580078125	2	467.255643	932.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.535	1	29.535	29.035	30.035	0								0	0	0	0.22106	1	10831	10831		47.916	1.9434	1		+		38247	12555	26212	26304	38719	38719					0.027783825231722403
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2844543457031	2	491.2844	980.554247	-1.2603	-0.00061916	1.5984	0.00078526	0.33809	0.0001661	491.28515251826684	38.814	0.30467	38.814	38.727	39.032	0					34	17	3	0	0	0	0.035062	1	13070	13070		104.06	13.456	1	399050			38248	4461	26213	26305	38720	38720					0.06319224728758854
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7862243652344	2	491.2844	980.554247	-0.063182	-3.104E-05	0.37649	0.00018496	0.3133	0.00015392	491.2846115437067	39.018	0.36942	39.018	38.928	39.297	0					21	12	3	0	0	0	0.055856	1	15315	15315		93.195	5.499	1	469070			38249	4461	26213	26305	38721	38721					0.06319224728758854
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.28521728515625	2	491.2844	980.554247	0.54035	0.00026546	0.28577	0.00014039	0.82612	0.00040586	491.2844267925555	38.792	0.26154	38.792	38.698	38.96	0					27	13	3	0	0	0	0.07136	1	13852	13852		87.696	0	1	299980			38250	4461	26213	26305	38722	38722					0.06319224728758854
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.28448486328125	2	491.2844	980.554247	-0.074791	-3.6744E-05	0.29139	0.00014315	0.2166	0.00010641	491.2845078081792	38.779	0.33235	38.779	38.692	39.025	0					33	17	3	0	0	0	0.12834	1	13847	13847		72.879	9.573	1	808520			38251	4461	26213	26305	38723	38723					0.06319224728758854
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.28448486328125	2	491.2844	980.554247	-0.56465	-0.0002774	0.65883	0.00032367	0.094179	4.6269E-05	491.28471407263766	38.99	0.30152	38.99	38.839	39.141	0					21	6	4	0	0	0	0.016683	1	15339	15339		127.46	26.209	1	3486200			38252	4461	26213	26305	38724	38724					0.06319224728758854
SSLGAWSL	8	Unmodified	_SSLGAWSL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant;KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.7135009765625	2	410.713611	819.412668	0.85048	0.0003493	-0.90145	-0.00037024	-0.050966	-2.0932E-05	410.71321326342655	42.907	0.60816	42.907	42.581	43.189	0					23	17	3	0	0	0	0.70055	1	17197	17197		33.516	4.366	1	321100			38253	7423	26214	26306	38725	38725					-0.004261485737060866
SSLGDAINK	9	Unmodified	_SSLGDAINK_					0	0	0		nc|ENSG00000110080|Q11206-7|ST3GAL4;nc|ENSG00000110080|Q11206-3|ST3GAL4;nc|ENSG00000110080|Q11206-6|ST3GAL4;nc|ENSG00000110080|Q11206-5|ST3GAL4;nc|ENSG00000110080|Q11206-2|ST3GAL4;ENSG00000110080|ENST00000444328|ST3GAL4;nc|ENSG00000110080|Q11206-4|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7402038574219	2	452.740357	903.46616	0.67999	0.00030786	-1.1875	-0.00053764	-0.50752	-0.00022977	452.7397921096618	25.064	0.1836	25.064	24.98	25.164	0					9	4	3	0	0	0	0.047855	1	8531	8531		96.034	39.6	1	497280			38254	2610	26215	26307	38726	38726					0.010566041381480318
SSLGDAINK	9	Unmodified	_SSLGDAINK_					0	0	0		nc|ENSG00000110080|Q11206-7|ST3GAL4;nc|ENSG00000110080|Q11206-3|ST3GAL4;nc|ENSG00000110080|Q11206-6|ST3GAL4;nc|ENSG00000110080|Q11206-5|ST3GAL4;nc|ENSG00000110080|Q11206-2|ST3GAL4;ENSG00000110080|ENST00000444328|ST3GAL4;nc|ENSG00000110080|Q11206-4|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7401428222656	2	452.740357	903.46616	0.87702	0.00039706	-1.3603	-0.00061588	-0.48331	-0.00021881	452.73969194149	25	0.1614	25	24.899	25.06	0					7	3	3	0	0	0	0.04067	1	8690	8690		98.582	31.088	1	598790			38255	2610	26215	26307	38727	38727					0.010566041381480318
SSLIEWGL	8	Unmodified	_SSLIEWGL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7403869628906	2	452.742368	903.470183	-1.1949	-0.000541	-3.6134	-0.0016359	-4.8083	-0.0021769	452.7408443400269	24.808	0.112	24.808	24.734	24.846	0					7	4	2	0	0	0	0.52345	1	7634	7634		57.811	1.3775	1	115580	+		38256	15973	26216	26308	38728	38728					0.014586936318437438
SSLILKTLQ	9	Unmodified	_SSLILKTLQ_					0	0	0		TNFRSF19|p.A359Lfs*25|1|0.31|ENSG00000127863|chr13:23668924-23668924|G/-|frameshift_variant	TNFRSF19|p.A359Lfs*25|1|0.31|ENSG00000127863|chr13:23668924-23668924|G/-|frameshift_variant	TNFRSF19|p.A359Lfs*25|1|0.31|ENSG00000127863|chr13:23668924-23668924|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.81121826171875	2	501.813325	1001.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.401	1	11.401	10.901	11.901	0								0	0	0	0.38913	1	2208	2208		14.137	1.1779	1				38257	22551	26217	26309	38729	38729					0.11135486654177384
SSLIVILLV	9	Unmodified	_SSLIVILLV_					0	0	0		ENST00000476701.5_1_7:4169443-4308379:+|nuORF;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-2|SDK1;ENST00000466611.1_1_7:4266967-4305013:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.8247985839844	2	478.823161	955.631769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.565	1	19.565	19.065	20.065	0								0	0	0	0.40728	1	5321	5321		8.2313	0	1				38258	4741	26218	26310	38730	38730					0.15217862664951554
SSLKPIKNK	9	Unmodified	_SSLKPIKNK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8186340332031	2	507.818941	1013.62333	1.127	0.00057233	-1.5333	-0.00077863	-0.40626	-0.00020631	507.81817522063545	14.935	0.21532	14.935	14.83	15.045	0					9	4	3	0	0	0	0.02429	1	3996	3996		110.12	38.824	1	680420			38259	5668	26219	26311	38731	38731					0.11706308748318861
SSLKQELPLGE	11	Unmodified	_SSLKQELPLGE_					0	0	0			REV__ENST00000262494.12_3_16:56381453-56381795:+|nuORF	REV__ENST00000262494.12_3_16:56381453-56381795:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.8258056640625	2	600.82716	1199.63977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.614	1	14.614	14.114	15.114	0								0	0	0	0.38672	1	3829	3829		40.058	4.9061	1		+		38260	18030	26220	26312	38732	38732					0.04793345123766812
SSLLEKGLD	9	Unmodified	_SSLLEKGLD_					0	0	0		ENSG00000161634|ENST00000293371|DCD;DCD|p.G79Dfs*5|1|0.43|ENSG00000161634|chr12:54645226-54645226|C/-|frameshift_variant;nc|ENSG00000161634|P81605-2|DCD	ENSG00000161634|ENST00000293371|DCD	ENSG00000161634|ENST00000293371|DCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2638854980469	2	481.263665	960.512776	-0.36365	-0.00017501	-0.068663	-3.3045E-05	-0.43231	-0.00020806	481.26373977352915	33.67	0.11634	33.67	33.582	33.698	0					7	4	2	0	0	0	0.15558	1	11302	11302		66.962	4.8545	1	106840			38261	5415	26221	26313	38733	38733					0.030940439694290944
SSLLGTLSKL	10	Unmodified	_SSLLGTLSKL_					0	0	0			REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.81097412109375	2	509.810782	1017.60701	0.95083	0.00048474	0.13363	6.8125E-05	1.0845	0.00055287	509.81084532703267	28.266	0.37208	28.266	28.165	28.537	0					17	9	3	0	0	0	0.58308	1	9979	9979		39.253	0.44669	1	275040	+		38262	14488	26222	26314	38734	38734					0.09891182791557185
SSLLLVVGSE	10	Unmodified	_SSLLLVVGSE_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.S595Vfs*62|1|0.12|ENSG00000130479|chr19:17727160-17727160|C/-|frameshift_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;ENST00000597681.1_1_19:17830311-17838159:+|nuORF;ENST00000601544.5_1_19:17830311-17836711:+|nuORF;MAP1S|p.P198Rfs*93|3|0.24|ENSG00000130479|chr19:17725972-17725972|C/-|frameshift_variant	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	335.1933288574219	3	335.193852	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.948	1	16.948	16.448	17.448	0								0	0	0	0.4201	1	4126	4126		27.047	0	1				38263	3645	26223	26315	38735	38735					0.05854903520582866
SSLMFSEIK	9	Unmodified	_SSLMFSEIK_					0	0	0			REV__ENST00000484575.1_1_2:209101805-209104899:-|nuORF	REV__ENST00000484575.1_1_2:209101805-209104899:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.2681274414062	2	521.267893	1040.52123	0.37579	0.00019589	1.4105	0.00073524	1.7863	0.00093113	521.2685175742477	35.089	0.3154	35.089	34.88	35.196	0					10	6	2	0	0	0	0.36892	1	13480	13480		44.377	0	1	108750	+		38264	19639	26224	26316	38736	38736					0.0025927461438186583
SSLNHIVEK	9	Unmodified	_SSLNHIVEK_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000491790.1_1_1:153733326-153733395:+|nuORF	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7831420898438	2	513.782556	1025.55056	0.032321	1.6606E-05	-0.26754	-0.00013746	-0.23522	-0.00012085	513.7822892558715	21.17	0.14792	21.17	21.087	21.235	0					7	4	2	0	0	0	0.099758	1	5780	5780		79.489	26.4	1	212600			38265	4572	26225	26317	38737	38737					0.038805549548897034
SSLNHIVEK	9	Unmodified	_SSLNHIVEK_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000491790.1_1_1:153733326-153733395:+|nuORF	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7828979492188	2	513.782556	1025.55056	0.017183	8.8284E-06	0.54127	0.00027809	0.55845	0.00028692	513.7828669408539	21.513	0.19002	21.513	21.42	21.61	0					9	4	3	0	0	0	0.0063888	1	6854	6854		152.06	50.46	1	1688300			38266	4572	26225	26317	38738	38738					0.038805549548897034
SSLNHIVEK	9	Unmodified	_SSLNHIVEK_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000491790.1_1_1:153733326-153733395:+|nuORF	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.782958984375	2	513.782556	1025.55056	-0.21637	-0.00011117	0.56706	0.00029135	0.35069	0.00018018	513.7829085651418	21.195	0.16644	21.195	21.124	21.291	0					17	5	4	0	0	0	0.01942	1	6037	6037		122.94	24.31	1	920510			38267	4572	26225	26317	38739	38739					0.038805549548897034
SSLNSGSSLGL	11	Unmodified	_SSLNSGSSLGL_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.26220703125	2	511.261653	1020.50875	-0.0032359	-1.6544E-06	0.89647	0.00045833	0.89323	0.00045667	511.2619652876105	19.347	0.19381	19.347	19.248	19.441	0					7	4	2	0	0	0	0.42746	1	5836	5836		49.536	1.8787	1	493390			38268	4567	26226	26318	38740	38740					-0.000680455242672906
SSLPGVFKK	9	Unmodified	_SSLPGVFKK_					0	0	0		ENSG00000122707|ENST00000377966|RECK;ENST00000479053.1_1_9:36036974-36085209:+|nuORF;RECK|p.K442Nfs*27|1|0.1|ENSG00000122707|chr9:36102116-36102116|A/-|frameshift_variant;RECK|p.N685Tfs*12|2|0.31|ENSG00000122707|chr9:36112464-36112464|A/-|frameshift_variant;ENST00000475774.5_1_9:36036951-36066822:+|nuORF	ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.78656005859375	2	481.78711	961.559667	-2.9221	-0.0014078	2.1847	0.0010525	-0.73743	-0.00035528	481.7879801341879	26.986	0.15982	26.986	26.892	27.052	0					6	4	2	0	0	0	0.37197	1	8769	8769		44.117	5.3107	1	109760			38269	3283	26227	26319	38741	38741					0.07734948311224343
SSLPGVFKK	9	Unmodified	_SSLPGVFKK_					0	0	0		ENSG00000122707|ENST00000377966|RECK;ENST00000479053.1_1_9:36036974-36085209:+|nuORF;RECK|p.K442Nfs*27|1|0.1|ENSG00000122707|chr9:36102116-36102116|A/-|frameshift_variant;RECK|p.N685Tfs*12|2|0.31|ENSG00000122707|chr9:36112464-36112464|A/-|frameshift_variant;ENST00000475774.5_1_9:36036951-36066822:+|nuORF	ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.78680419921875	2	481.78711	961.559667	2.3687	0.0011412	-3.315	-0.0015971	-0.94638	-0.00045595	481.7857420302498	27.128	0.2702	27.128	27.019	27.289	0					12	5	3	0	0	0	0.13267	1	9689	9689		71.877	11.584	1	938770			38270	3283	26227	26319	38742	38742					0.07734948311224343
SSLPPCPSPPS	11	Carbamidomethyl (C)	_SSLPPC(Carbamidomethyl (C))PSPPS_	SSLPPC(1)PSPPS		SSLPPC(42)PSPPS		0	1	0		ENST00000439374.6_1_1:151025289-151025496:-|nuORF	ENST00000439374.6_1_1:151025289-151025496:-|nuORF	ENST00000439374.6_1_1:151025289-151025496:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	375.8476257324219	3	375.846346	1124.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.521	1	15.521	15.021	16.021	0								0	0	0	0.37035	1	4260	4260		42.338	8.4164	1				38271	9561	26228	26320	38743	38743	394				-0.04006814879335252
SSLPRGVPQE	10	Unmodified	_SSLPRGVPQE_					0	0	0			REV__HOXC10|p.S210Qfs*4|1|0.28|ENSG00000180818|chr12:53985881-53985882|-/C|frameshift_variant	REV__HOXC10|p.S210Qfs*4|1|0.28|ENSG00000180818|chr12:53985881-53985882|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.1925048828125	3	357.192734	1068.55637	1.3485	0.00048169	-1.7498	-0.000625	-0.40123	-0.00014332	357.19211962719106	12.097	0.20669	12.097	12.014	12.221	0					9	5	3	0	0	0	0.4758	1	2485	2485		47.96	1.5027	1	492810	+		38272	16822	26229	26321	38744	38744					0.024836534665837462
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.78985595703125	2	510.78985	1019.56515	1.0908	0.00055718	-0.065082	-3.3243E-05	1.0257	0.00052393	510.7896227430388	39.855	0.2543	39.855	39.732	39.986	0					21	15	2	0	0	0	0.12278	1	12912	12912		77.318	33.201	1	130770			38273	1086	26230	26322	38745	38745					0.056146271030456774
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7904357910156	2	510.78985	1019.56515	0.98547	0.00050337	-0.84461	-0.00043142	0.14085	7.1946E-05	510.78944881129934	40.149	0.37849	40.149	40.012	40.39	0					42	15	4	0	0	0	0.17062	1	15283	15283		58.23	8.7884	1	1107000			38274	1086	26230	26322	38746	38746					0.056146271030456774
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7899169921875	2	510.78985	1019.56515	-0.0060221	-3.076E-06	-0.32608	-0.00016656	-0.3321	-0.00016963	510.7896780959866	40.147	0.31605	40.147	40.038	40.354	0					33	13	3	0	0	0	0.073657	1	15288	15288		80.455	41.648	1	559650			38275	1086	26230	26322	38747	38747					0.056146271030456774
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.78973388671875	2	510.78985	1019.56515	-0.40863	-0.00020872	0.82371	0.00042074	0.41509	0.00021202	510.7902106049218	39.951	0.31736	39.951	39.813	40.13	0					55	18	4	0	0	0	0.10821	1	13381	13381		70.816	10.522	1	1497600			38276	1086	26230	26322	38748	38748					0.056146271030456774
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.79010009765625	2	510.78985	1019.56515	0.3277	0.00016738	-0.032107	-1.64E-05	0.29559	0.00015098	510.7898547891657	39.903	0.35803	39.903	39.801	40.159	0					51	19	4	0	0	0	0.070005	1	14191	14191		71.877	5.4482	1	729920			38277	1086	26230	26322	38749	38749					0.056146271030456774
SSLPTVGVFAK	11	Unmodified	_SSLPTVGVFAK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.316650390625	2	553.316232	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.324	1	40.324	39.824	40.824	0								0	0	0	0.077732	1	16001	16001		63.534	22.961	1				38278	5185	26231	26323	38750	38750					0.06978585165848017
SSLQEVYHK	9	Unmodified	_SSLQEVYHK_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.780029296875	2	545.780013	1089.54547	0.40969	0.0002236	0.98385	0.00053697	1.3935	0.00076057	545.7805164790173	22.599	0.58627	22.599	22.463	23.049	0					20	14	3	0	0	0	0.056004	1	7354	7354		93.143	21.266	1	920410			38279	4525	26232	26324	38751	38751					0.0042825109228488145
SSLQEVYHK	9	Unmodified	_SSLQEVYHK_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7810668945312	2	545.780013	1089.54547	0.50713	0.00027678	0.89651	0.0004893	1.4036	0.00076608	545.7807851576168	22.304	0.10289	22.304	22.228	22.331	0					5	3	2	0	0	0	0.22837	1	6551	6551		58.23	6.8945	1	68419			38280	4525	26232	26324	38752	38752					0.0042825109228488145
SSLQEVYHK	9	Unmodified	_SSLQEVYHK_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7799682617188	2	545.780013	1089.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.387	1	22.387	21.887	22.887	0								0	0	0	0.045272	1	6659	6659		88.177	9.9132	1				38281	4525	26232	26324	38753	38753					0.0042825109228488145
SSLQEVYHK	9	Unmodified	_SSLQEVYHK_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7802124023438	2	545.780013	1089.54547	3.7529	0.0020483	-2.8478	-0.0015543	0.90508	0.00049397	545.7783751528998	22.513	0.46793	22.513	22.404	22.872	0					17	9	3	0	0	0	0.12834	1	7511	7511		72.879	7.4139	1	1001200			38282	4525	26232	26324	38754	38754					0.0042825109228488145
SSLRAELE	8	Unmodified	_SSLRAELE_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7403869628906	2	452.740357	903.46616	-0.015456	-6.9974E-06	0.77522	0.00035097	0.75977	0.00034398	452.7405119676508	24.759	0.15411	24.759	24.684	24.838	0					6	4	2	0	0	0	0.37144	1	7369	7369		74.255	12.148	1	37075	+		38283	17156	26233	26325	38755	38755					0.010566041381366631
SSLRASTSK	9	Unmodified	_SSLRASTSK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000397390.3_1_9:19200348-19200429:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.7589111328125	2	468.759081	935.503609	-0.63774	-0.00029894	0.25278	0.00011849	-0.38496	-0.00018045	468.75912573472925	13.895	0.087815	13.895	13.848	13.936	0					4	2	2	0	0	0	0.035106	1	3272	3272		104.01	37.584	1	291100			38284	4145	26234	26326	38756	38756					0.0332769540375466
SSLRASTSK	9	Unmodified	_SSLRASTSK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000397390.3_1_9:19200348-19200429:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7587890625	2	468.759081	935.503609	-1.1328	-0.00053102	1.1306	0.00052997	-0.0022331	-1.0468E-06	468.75968752169854	13.642	0.060006	13.642	13.602	13.662	0					5	3	2	0	0	0	0.13726	1	2834	2834		70.816	14.095	1	55421			38285	4145	26234	26326	38757	38757					0.0332769540375466
SSLRASTSK	9	Unmodified	_SSLRASTSK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000397390.3_1_9:19200348-19200429:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7585144042969	2	468.759081	935.503609	0.56634	0.00026548	-1.2568	-0.00058913	-0.69045	-0.00032365	468.7584582223985	13.855	0.21184	13.855	13.749	13.961	0					6	4	2	0	0	0	0.024312	1	3309	3309		114.86	21.715	1	430160			38286	4145	26234	26326	38758	38758					0.0332769540375466
SSLSAEAIRQR	11	Unmodified	_SSLSAEAIRQR_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.333740234375	2	609.333476	1216.6524	0.51222	0.00031211	-1.6765	-0.0010216	-1.1643	-0.00070946	609.3322240368351	23.487	0.16612	23.487	23.429	23.595	0					7	3	3	0	0	0	0.12478	1	8108	8108		83.647	21.54	1	494700			38287	2899	26235	26327	38759	38759					0.05273801306634596
SSLSATGALA	10	Unmodified	_SSLSATGALA_					0	0	0		ENSG00000178878|ENST00000356591|APOLD1;nc|ENSG00000178878|Q96LR9|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2345886230469	2	439.234907	876.455261	-0.015986	-7.0216E-06	0.29035	0.00012753	0.27436	0.00012051	439.23502071140194	13.776	0.32903	13.776	13.636	13.965	0					15	8	2	0	0	0	0.033743	1	3179	3179		115.46	5.3391	1	181710			38288	6732	26236	26328	38760	38760					0.012092017638678954
SSLSGAHRK	9	Unmodified	_SSLSGAHRK_					0	0	0		ENSG00000150990|ENST00000308736|DHX37;DHX37|p.R153H|1|0.18|ENSG00000150990|chr12:124980770-124980770|C/T|missense_variant	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7588806152344	2	471.759415	941.504277	-0.59934	-0.00028274	0.012283	5.7944E-06	-0.58705	-0.00027695	471.7592067656037	12.239	0.096374	12.239	12.175	12.271	0					6	3	2	0	0	0	0.35021	1	2542	2542		45.972	0	1	94445			38289	4940	26237	26329	38761	38761					0.03118534843474663
SSLSIGSIISK	11	Unmodified	_SSLSIGSIISK_					0	0	0		ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3194580078125	2	546.318971	1090.62339	0.42533	0.00023236	-2.6852	-0.001467	-2.2599	-0.0012346	546.3169312659771	41.904	0.28837	41.904	41.795	42.084	0					17	14	2	0	0	0	0.051542	1	15899	15899		104.42	44.305	1	108950			38290	6033	26238	26330	38762	38762					0.08170263957663337
SSLSLVEIYK	10	Unmodified	_SSLSLVEIYK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.8223876953125	2	569.821347	1137.62814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.255	1	43.255	42.755	43.755	0								0	0	0	0.37702	1	17307	17307		37.508	7.1905	1				38291	7354	26239	26331	38763	38763					0.06483148100414837
SSLSSIFLIF	10	Unmodified	_SSLSSIFLIF_					0	0	0		tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.3121337890625	2	557.313158	1112.61176	0.57583	0.00032092	-3.2586	-0.0018161	-2.6828	-0.0014952	557.3113003976156	28.885	0.16569	28.885	28.778	28.944	0					6	3	2	0	0	0	0.7005	1	10649	10649		21.96	1.9631	1	81892			38292	22943	26240	26332	38764	38764					0.05996066934335431
SSLSTEAS	8	Unmodified	_SSLSTEAS_					0	0	0		nc|ENSG00000229809|P0C7X2-5|ZNF688	nc|ENSG00000229809|P0C7X2-5|ZNF688	nc|ENSG00000229809|P0C7X2-5|ZNF688	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.18231201171875	2	391.18234	780.350128	-0.042879	-1.6774E-05	-0.21399	-8.3708E-05	-0.25687	-0.00010048	391.1822362065101	16.957	0.53913	16.957	16.903	17.442	0					35	18	4	0	0	0	0.76283	1	3945	3945		25.45	1.2474	1	3178300			38293	11776	26241	26333	38765	38765					-0.04883339432558387
SSLSTEAS	8	Unmodified	_SSLSTEAS_					0	0	0		nc|ENSG00000229809|P0C7X2-5|ZNF688	nc|ENSG00000229809|P0C7X2-5|ZNF688	nc|ENSG00000229809|P0C7X2-5|ZNF688	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.18231201171875	2	391.18234	780.350128	-0.042823	-1.6752E-05	-0.03022	-1.1822E-05	-0.073043	-2.8573E-05	391.18232430720366	17.953	0.57968	17.953	17.868	18.448	0					30	20	3	0	0	0	0.70055	1	4375	4375		33.516	6.7195	1	2286300			38294	11776	26241	26333	38766	38766					-0.04883339432558387
SSLTEEHEVRA	11	Unmodified	_SSLTEEHEVRA_					0	0	0			REV__GPC3|p.H377R|1|0.64|ENSG00000147257|chrX:133699931-133699931|T/C|missense_variant	REV__GPC3|p.H377R|1|0.64|ENSG00000147257|chrX:133699931-133699931|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	629.30517578125	2	629.307123	1256.59969	1.4471	0.00091069	-4.3977	-0.0027675	-2.9506	-0.0018568	629.3039582128041	39.382	0.15725	39.382	39.306	39.463	0					11	5	3	0	0	0	0.76233	1	15504	15504		21.686	9.4791	1	72810	+		38295	20698	26242	26334	38767	38767					-0.0183420154680789
SSLVLVMLQ	9	Unmodified	_SSLVLVMLQ_					0	0	0		ENST00000461893.5_1_1:1720620-1721958:-|nuORF	ENST00000461893.5_1_1:1720620-1721958:-|nuORF	ENST00000461893.5_1_1:1720620-1721958:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2900390625	2	495.288628	988.562703	2.8341	0.0014037	0.28221	0.00013977	3.1163	0.0015435	495.2887274837398	17.555	0.32063	17.555	17.447	17.767	0					10	6	3	0	0	0	0.24334	1	5097	5097		32.812	32.812	1	618980			38296	9738	26243	26335	38768	38768					0.06796455373739718
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	355.56207275390625	3	355.561987	1063.66413	0.4344	0.00015445	-0.92566	-0.00032913	-0.49126	-0.00017467	355.56192130342356	34.162	0.11076	34.162	34.138	34.249	0					5	4	2	0	0	0	0.5741	1	11168	11168		24.519	5.4157	1	66033			38297	5131	26244	26336	38769	38769					0.13484650067948678
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.839599609375	2	532.839342	1063.66413	0.41449	0.00022086	0.27302	0.00014548	0.68751	0.00036633	532.8394924229764	34.194	0.29474	34.194	34.067	34.362	0					24	13	3	0	0	0	0.02953	1	11173	11173		116.9	45.608	1	327850			38298	5131	26244	26336	38770	38770					0.13484650067948678
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.5620422363281	3	355.561987	1063.66413	0.71455	0.00025407	-0.74373	-0.00026444	-0.029176	-1.0374E-05	355.56173567878506	34.453	0.29092	34.453	34.372	34.663	0					16	7	3	0	0	0	0.087861	1	12832	12832		82.241	49.428	1	529060			38299	5131	26244	26336	38771	38771					0.13484650067948678
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.5621643066406	3	355.561987	1063.66413	0.3112	0.00011065	-0.41585	-0.00014786	-0.10465	-3.7211E-05	355.5618076604228	34.469	0.25743	34.469	34.345	34.602	0					14	6	3	0	0	0	0.1424	1	13282	13282		69.628	33.181	1	227250			38300	5131	26244	26336	38772	38772					0.13484650067948678
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	355.56121826171875	3	355.561987	1063.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.255	1	34.255	33.755	34.755	0								0	0	0	0.3245	1	12108	12108		30.318	5.7985	1				38301	5131	26244	26336	38773	38773					0.13484650067948678
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.5619812011719	3	355.561987	1063.66413	-0.056172	-1.9973E-05	0.26623	9.4662E-05	0.21006	7.4689E-05	355.56199973571375	34.383	0.35728	34.383	34.294	34.651	0					19	7	4	0	0	0	0.037924	1	13170	13170		101.25	46.53	1	876090			38302	5131	26244	26336	38774	38774					0.13484650067948678
SSMAETQSK	9	Unmodified	_SSMAETQSK_					0	0	0		ENST00000507863.1_1_5:10378003-10378912:+|nuORF	ENST00000507863.1_1_5:10378003-10378912:+|nuORF	ENST00000507863.1_1_5:10378003-10378912:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.7202453613281	2	484.721307	967.42806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.411	1	14.411	13.911	14.911	0								0	0	0	0.23111	1	3504	3504		46.457	0.48454	1				38303	10206	26245	26337	38775	38775					-0.056956498388331056
SSMAETQSK	9	Unmodified	_SSMAETQSK_					0	0	0		ENST00000507863.1_1_5:10378003-10378912:+|nuORF	ENST00000507863.1_1_5:10378003-10378912:+|nuORF	ENST00000507863.1_1_5:10378003-10378912:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7207946777344	2	484.721307	967.42806	0.66149	0.00032064	-1.975	-0.0009573	-1.3135	-0.00063667	484.72023970858186	14.324	0.19608	14.324	14.267	14.463	0					9	4	3	0	0	0	0.021015	1	3702	3702		120.31	52.812	1	378630			38304	10206	26245	26337	38776	38776					-0.056956498388331056
SSMAPGPA	8	Unmodified	_SSMAPGPA_					0	0	0			REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.1648864746094	2	359.165439	716.316325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.001	1	12.001	11.501	12.501	0								0	0	0	1.7419	1	2450	2450		29.842	8.1392	1		+		38305	19434	26246	26338	38777	38777					-0.053180394053015334
SSMDTTLILK	10	Unmodified	_SSMDTTLILK_					0	0	0		CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF	CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8004760742188	2	554.799557	1107.58456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.466	1	38.466	37.966	38.966	0								0	0	0	0.060762	1	15092	15092		88.177	26.07	1				38306	481	26247	26339	38778	38778					0.03507215331637781
SSMGPVAHSI	10	Unmodified	_SSMGPVAHSI_					0	0	0		CSRNP3|p.V309I|1|0.29|ENSG00000178662|chr2:165678920-165678920|G/A|missense_variant	CSRNP3|p.V309I|1|0.29|ENSG00000178662|chr2:165678920-165678920|G/A|missense_variant	CSRNP3|p.V309I|1|0.29|ENSG00000178662|chr2:165678920-165678920|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.24237060546875	2	493.242209	984.469866	-0.50532	-0.00024924	0.66271	0.00032688	0.15739	7.7631E-05	493.24272013020794	31.653	0.22116	31.653	31.601	31.822	0					11	5	3	0	0	0	0.37692	1	11592	11592		58.782	2.0609	1	210560			38307	700	26248	26340	38779	38779					-0.022990493596466877
SSMKDLAQK	9	Unmodified	_SSMKDLAQK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.26318359375	2	504.263142	1006.51173	-0.38108	-0.00019216	-0.41051	-0.00020701	-0.79159	-0.00039917	504.2632845396054	19.168	0.31312	19.168	19.047	19.36	0					15	6	4	0	0	0	0.076532	1	5880	5880		85.862	32.925	1	949290			38308	3575	26249	26341	38780	38780					0.00873506328878193
SSMLIHILL	9	Unmodified	_SSMLIHILL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.803466796875	2	513.804445	1025.59434	-0.03266	-1.6781E-05	-1.1747	-0.00060359	-1.2074	-0.00062037	513.8038370627831	11.669	0.20032	11.669	11.631	11.831	0					13	9	3	0	0	0	0.47428	1	2263	2263		35.201	3.2459	1	552550			38309	4679	26251	26342	38781	38781					0.08256448127690419
SSMPSSRHK	9	Unmodified	_SSMPSSRHK_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5030212402344	3	339.502914	1015.48691	0.66813	0.00022683	-0.78073	-0.00026506	-0.1126	-3.8227E-05	339.5026991397261	12.474	0.25739	12.474	12.384	12.641	0					11	8	2	0	0	0	0.1424	1	2628	2628		69.628	25.25	1	613200			38310	1490	26252	26343	38782	38782					-0.020211287538359102
SSMPSSRHK	9	Unmodified	_SSMPSSRHK_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.5029602050781	3	339.502914	1015.48691	-0.70562	-0.00023956	0.78318	0.00026589	0.07756	2.6332E-05	339.5032652969776	12.233	0.11961	12.233	12.181	12.301	0					11	7	3	0	0	0	0.46194	1	2404	2404		36.447	8.3653	1	215090			38311	1490	26252	26343	38783	38783					-0.020211287538359102
SSMPSSRHK	9	Unmodified	_SSMPSSRHK_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.750732421875	2	508.750733	1015.48691	1.1538	0.00058702	-1.565	-0.00079622	-0.41121	-0.0002092	508.75002008080696	12.475	0.81632	12.475	12.343	13.159	0					43	19	4	0	0	0	0.026848	1	2804	2804		85.161	0	1	18541000			38312	1490	26252	26343	38784	38784					-0.020211287538359102
SSMPSSRHK	9	Unmodified	_SSMPSSRHK_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.5028991699219	3	339.502914	1015.48691	1.4801	0.00050249	-2.084	-0.00070753	-0.60393	-0.00020504	339.50232940147504	12.475	0.47215	12.475	12.343	12.815	0					21	11	4	0	0	0	0.22837	1	2805	2805		58.23	1.7961	1	6025900			38313	1490	26252	26343	38785	38785					-0.020211287538359102
SSMPSSRHK	9	Unmodified	_SSMPSSRHK_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;AFF4|p.R689Gfs*28|1|0.29|ENSG00000072364|chr5:132896566-132896566|A/-|frameshift_variant;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.5028991699219	3	339.502914	1015.48691	1.5739	0.00053436	-2.0955	-0.00071144	-0.5216	-0.00017708	339.50230500101117	12.486	0.36266	12.486	12.377	12.74	0					19	9	4	0	0	0	0.10915	1	2658	2658		77.318	27.284	1	1798300			38314	1490	26252	26343	38786	38786					-0.020211287538359102
SSMRSAKEQV	10	Oxidation (M)	_SSM(Oxidation (M))RSAKEQV_		SSM(1)RSAKEQV		SSM(40)RSAKEQV	0	0	1		nc|ENSG00000167703|Q8N370-4|SLC43A2;nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2	nc|ENSG00000167703|Q8N370-4|SLC43A2	nc|ENSG00000167703|Q8N370-4|SLC43A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	380.5237731933594	3	380.188884	1137.54482	-1.1223	-0.00042667	1.5325	0.00058265	0.41025	0.00015597	380.52373381557015	20.484	0.12463	20.484	20.438	20.563	0					7	4	2	0	0	0	0.54861	1	5732	5732		40.058	6.1365	1	76722			38315	6022	26253	26344	38787	38787		247			-0.01844911619082268
SSMSAQLLY	9	Unmodified	_SSMSAQLLY_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2447204589844	2	500.244418	998.474282	0.89374	0.00044709	-0.95637	-0.00047842	-0.062627	-3.1329E-05	500.24389492274594	45.723	0.11391	45.723	45.657	45.771	0					9	6	2	0	0	0	0.33044	1	17652	17652		47.657	7.0847	1	51327			38316	151	26254	26345	38788	38788					-0.025015849367377996
SSMSLEQKMTF	11	2 Oxidation (M)	_SSM(Oxidation (M))SLEQKM(Oxidation (M))TF_		SSM(1)SLEQKM(1)TF		SSM(40)SLEQKM(40)TF	0	0	2		ENSG00000205279|ENST00000379445|CTXN3	ENSG00000205279|ENST00000379445|CTXN3	ENSG00000205279|ENST00000379445|CTXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	660.7944946289062	2	660.794146	1319.57374	0.24378	0.00016109	0.016537	1.0927E-05	0.26032	0.00017202	660.7941406831935	27.269	0.41677	27.269	27.148	27.565	0					46	15	4	0	0	0	0.55715	1	8365	8365		40.058	40.058	1	2230100			38317	7742	26255	26346	38789	38789		312;313			-0.07326555104964427
SSMSTALSK	9	Unmodified	_SSMSTALSK_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.22894287109375	2	456.228768	910.442982	0.030572	1.3948E-05	0.37428	0.00017076	0.40485	0.0001847	456.2289724149389	22.199	0.16301	22.199	22.127	22.29	0					9	5	2	0	0	0	0.28897	1	6232	6232		51.193	10.415	1	103730			38318	11546	26256	26347	38790	38790					-0.015821579708358513
SSMSTALSK	9	Unmodified	_SSMSTALSK_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.2285461425781	2	456.228768	910.442982	0.74689	0.00034075	-1.3057	-0.00059568	-0.55876	-0.00025492	456.22826619919863	22.523	0.22838	22.523	22.43	22.659	0					11	5	3	0	0	0	0.032383	1	7339	7339		106.68	34.806	1	1057100			38319	11546	26256	26347	38791	38791					-0.015821579708358513
SSMSTALSK	9	Unmodified	_SSMSTALSK_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.2285461425781	2	456.228768	910.442982	-0.14204	-6.4801E-05	-0.75342	-0.00034373	-0.89545	-0.00040853	456.2284471604843	22.426	0.21615	22.426	22.318	22.534	0					11	4	3	0	0	0	0.012936	1	7579	7579		134.77	52.015	1	548190			38320	11546	26256	26347	38792	38792					-0.015821579708358513
SSMSTALSK	9	Unmodified	_SSMSTALSK_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.22869873046875	2	456.228768	910.442982	0.11705	5.34E-05	-0.4833	-0.00022049	-0.36625	-0.00016709	456.2289080556673	22.295	0.10506	22.295	22.216	22.321	0					4	2	2	0	0	0	0.012936	1	6615	6615		134.77	60.511	1	65847			38321	11546	26256	26347	38793	38793					-0.015821579708358513
SSMSTALSK	9	Unmodified	_SSMSTALSK_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.2288513183594	2	456.228768	910.442982	0.18505	8.4423E-05	-0.13298	-6.0667E-05	0.05207	2.3756E-05	456.2287057811635	22.296	0.14372	22.296	22.202	22.345	0					5	3	2	0	0	0	0.22837	1	6630	6630		58.23	3.4536	1	119980			38322	11546	26256	26347	38794	38794					-0.015821579708358513
SSMSTALSK	9	Unmodified	_SSMSTALSK_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.2286071777344	2	456.228768	910.442982	-0.43029	-0.00019631	-0.27296	-0.00012453	-0.70324	-0.00032084	456.22883919215	22.442	0.26889	22.442	22.287	22.555	0					13	5	4	0	0	0	0.0055674	1	7454	7454		155.58	83.707	1	558540			38323	11546	26256	26347	38795	38795					-0.015821579708358513
SSMSTALSK	9	Unmodified	_SSMSTALSK_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.228515625	2	456.228768	910.442982	0.87866	0.00040087	-1.6835	-0.00076807	-0.80485	-0.00036719	456.2280962252699	22.43	0.16864	22.43	22.321	22.489	0					8	3	3	0	0	0	0.095583	1	7473	7473		80.455	19.483	1	707710			38324	11546	26256	26347	38796	38796					-0.015821579708358513
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7599182128906	2	482.760235	963.505917	0.044191	2.1334E-05	2.5518	0.0012319	2.596	0.0012532	482.76162705687864	28.268	0.25961	28.268	28.119	28.379	0					17	8	3	0	0	0	0.010494	1	8786	8786		139.97	46.827	1	258320			38325	9843	26257	26348	38797	38797					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2611999511719	2	482.760235	963.505917	0.064335	3.1058E-05	-1.1681	-0.00056393	-1.1038	-0.00053287	482.7597289560223	28.216	0.19677	28.216	28.144	28.34	0					15	6	4	0	0	0	0.01873	1	8779	8779		124.08	55.293	1	280260			38326	9843	26257	26348	38798	38798					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7601318359375	2	482.760235	963.505917	0.58032	0.00028015	-1.4292	-0.00068995	-0.84886	-0.0004098	482.7605805619689	28.508	0.90791	28.508	27.833	28.741	0					47	22	4	0	0	0	0.013878	1	10082	10082		132.76	34.128	1	2064400			38327	9843	26257	26348	38799	38799					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.76007080078125	2	482.760235	963.505917	-0.12386	-5.9793E-05	-0.98529	-0.00047566	-1.1091	-0.00053545	482.7599470437686	28.523	0.4069	28.523	28.279	28.686	0					18	10	2	0	0	0	0.0049871	1	10074	10074		158.07	41.171	1	1522400			38328	9843	26257	26348	38800	38800					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7597961425781	2	482.760235	963.505917	-1.2908	-0.00062317	0.8319	0.00040161	-0.45894	-0.00022156	482.76055311452865	28.25	0.47794	28.25	27.96	28.438	0					45	17	6	0	0	0	0.013878	1	9075	9075		132.76	28.701	1	971220			38329	9843	26257	26348	38801	38801					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7601318359375	2	482.760235	963.505917	0.68285	0.00032965	-1.1449	-0.00055272	-0.46207	-0.00022307	482.7598288438764	28.515	0.55431	28.515	28.275	28.829	0					32	11	7	0	0	0	0.00073892	1	10445	10445		185.55	58.088	1	4822500			38330	9843	26257	26348	38802	38802					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7597961425781	2	482.760235	963.505917	-0.27816	-0.00013428	0.57621	0.00027817	0.29805	0.00014389	482.76058199757256	28.288	0.42072	28.288	28.069	28.49	0					14	10	2	0	0	0	0.020674	1	9360	9360		120.87	32.226	1	825730			38331	9843	26257	26348	38803	38803					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7598876953125	2	482.760235	963.505917	-2.9209	-0.0014101	1.4179	0.0006845	-1.5031	-0.00072562	482.76130233088367	28.307	0.38488	28.307	28.057	28.442	0					28	9	5	0	0	0	0.00073892	1	9370	9370		185.55	66.807	1	683050			38332	9843	26257	26348	38804	38804					0.022704078172182562
SSMTAVLQK	9	Unmodified	_SSMTAVLQK_					0	0	0		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7600402832031	2	482.760235	963.505917	0.88791	0.00042865	-1.5337	-0.0007404	-0.64578	-0.00031175	482.75975252111374	28.451	0.76373	28.451	27.894	28.658	0					33	15	5	0	0	0	0.0080613	1	10296	10296		145.16	37.068	1	5196100			38333	9843	26257	26348	38805	38805					0.022704078172182562
SSMTSTMTIGK	11	Unmodified	_SSMTSTMTIGK_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.2733764648438	2	572.272849	1142.53115	-0.088664	-5.074E-05	0.32622	0.00018669	0.23756	0.00013595	572.2734185987472	29.043	0.21195	29.043	28.957	29.169	0					15	5	4	0	0	0	0.040365	1	10337	10337		109.83	42.336	1	535260			38334	3741	26258	26349	38806	38806					-0.03441905442514326
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2449645996094	2	494.244418	986.474282	-0.055264	-2.7314E-05	0.48815	0.00024127	0.43289	0.00021395	494.24473845390406	27.358	0.26017	27.358	27.249	27.509	0					17	9	3	0	0	0	0.12278	1	8415	8415		74.165	41.353	1	219500			38335	2763	26259	26350	38807	38807					-0.019495849367331175
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2443542480469	2	494.244418	986.474282	0.75908	0.00037517	-1.0218	-0.00050502	-0.26272	-0.00012985	494.2440248049809	27.627	0.30469	27.627	27.501	27.805	0					21	7	4	0	0	0	0.021015	1	9662	9662		120.31	65.53	1	2045400			38336	2763	26259	26350	38808	38808					-0.019495849367331175
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.24395751953125	2	494.244418	986.474282	-1.2689	-0.00062716	0.69189	0.00034196	-0.57704	-0.0002852	494.24475280510796	27.359	0.22891	27.359	27.272	27.501	0					19	8	3	0	0	0	0.082776	1	8712	8712		83.647	25.417	1	263930			38337	2763	26259	26350	38809	38809					-0.019495849367331175
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2441711425781	2	494.244418	986.474282	0.6627	0.00032753	-1.4292	-0.00070635	-0.76646	-0.00037882	494.243849429503	27.609	0.30848	27.609	27.506	27.815	0					13	6	3	0	0	0	0.026848	1	10031	10031		112.11	58.756	1	1907600			38338	2763	26259	26350	38810	38810					-0.019495849367331175
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.24444580078125	2	494.244418	986.474282	0.2226	0.00011002	0.033092	1.6356E-05	0.25569	0.00012637	494.24433707639525	27.423	0.1777	27.423	27.345	27.522	0					7	4	2	0	0	0	0.095583	1	8964	8964		80.455	44.836	1	99797			38339	2763	26259	26350	38811	38811					-0.019495849367331175
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.244873046875	2	494.244418	986.474282	0.04609	2.278E-05	0.23801	0.00011763	0.2841	0.00014041	494.24454079891194	27.418	0.2554	27.418	27.333	27.588	0					12	6	3	0	0	0	0.10506	1	8976	8976		78.264	40.452	1	335450			38340	2763	26259	26350	38812	38812					-0.019495849367331175
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2445983886719	2	494.244418	986.474282	-0.63589	-0.00031429	-0.051764	-2.5584E-05	-0.68766	-0.00033987	494.2445665738182	27.569	0.32155	27.569	27.459	27.78	0					17	6	4	0	0	0	0.037712	1	9868	9868		101.46	59.064	1	1439900			38341	2763	26259	26350	38813	38813					-0.019495849367331175
SSMVFTTSK	9	Unmodified	_SSMVFTTSK_					0	0	0		ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2442626953125	2	494.244418	986.474282	0.89985	0.00044475	-1.2679	-0.00062668	-0.3681	-0.00018193	494.24389392771974	27.551	0.42279	27.551	27.39	27.813	0					17	8	3	0	0	0	0.029571	1	9883	9883		109.44	56.502	1	2585900			38342	2763	26259	26350	38814	38814					-0.019495849367331175
SSMVGVNLPQK	11	Unmodified	_SSMVGVNLPQK_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.3109130859375	2	580.310623	1158.60669	-0.034252	-1.9877E-05	0.037964	2.2031E-05	0.0037116	2.1539E-06	580.3107672267425	32.823	0.16684	32.823	32.737	32.904	0					9	4	3	0	0	0	0.10275	1	12094	12094		89.029	35.94	1	190150			38343	2156	26260	26351	38815	38815					0.03373439800043343
SSMVGVNLPQK	11	Unmodified	_SSMVGVNLPQK_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.3109741210938	2	580.310623	1158.60669	1.5429	0.00089535	-1.365	-0.00079215	0.17783	0.0001032	580.3100678108697	32.796	0.20562	32.796	32.679	32.885	0					11	5	3	0	0	0	0.12944	1	12506	12506		82.75	21.779	1	200740			38344	2156	26260	26351	38816	38816					0.03373439800043343
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.79815673828125	2	509.798206	1017.58186	-0.11143	-5.6809E-05	0.1961	9.997E-05	0.084663	4.3161E-05	509.7983177423829	12.508	0.098349	12.508	12.451	12.55	0					13	5	3	0	0	0	0.076532	1	2373	2373		85.862	3.1113	1	905190			38345	113	26261	26352	38817	38817					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.79779052734375	2	509.798206	1017.58186	-0.013889	-7.0807E-06	0.18347	9.3534E-05	0.16958	8.6454E-05	509.79819254859297	12.755	0.46998	12.755	12.681	13.151	0					33	13	3	0	0	0	0.017421	1	2738	2738		126.24	0.42857	1	13578000			38346	113	26261	26352	38818	38818					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7992858886719	2	509.798206	1017.58186	-0.47471	-0.00024201	0.8532	0.00043496	0.37849	0.00019296	509.7985662189093	12.51	0.15891	12.51	12.457	12.616	0					20	9	4	0	0	0	0.040209	1	2473	2473		99.013	20.749	1	1213500			38347	113	26261	26352	38819	38819					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.79876708984375	2	509.798206	1017.58186	-0.35349	-0.00018021	0.85399	0.00043536	0.5005	0.00025515	509.7986163058939	12.505	0.062728	12.505	12.468	12.531	0					5	3	2	0	0	0	0.10915	1	2481	2481		77.318	2.2743	1	103280			38348	113	26261	26352	38820	38820					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.79815673828125	2	509.798206	1017.58186	1.1813	0.00060221	-1.2639	-0.00064434	-0.082633	-4.2126E-05	509.7975152410063	12.761	0.53255	12.761	12.671	13.203	0					28	12	3	0	0	0	0.0055674	1	2937	2937		155.58	34.716	1	7185300			38349	113	26261	26352	38821	38821					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7981262207031	2	509.798206	1017.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.771	1	12.771	12.271	13.271	0								0	0	0	0.18645	1	2955	2955		52.937	1.6012	1				38350	113	26261	26352	38822	38822					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	340.20135498046875	3	340.201229	1017.58186	0.51415	0.00017492	-0.16168	-5.5004E-05	0.35247	0.00011991	340.20112797690945	12.48	0.078244	12.48	12.436	12.514	0					11	4	3	0	0	0	0.61124	1	2418	2418		26.063	0	1	138770			38351	113	26261	26352	38823	38823					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	340.53533935546875	3	340.201229	1017.58186	-0.054037	-1.8384E-05	0.27777	9.4498E-05	0.22373	7.6115E-05	340.2013552053038	12.471	0.076069	12.471	12.431	12.507	0					11	4	3	0	0	0	0.50858	1	2415	2415		54.722	32.161	1	275690			38352	113	26261	26352	38824	38824					0.07377127989002474
SSNDKVIKK	9	Unmodified	_SSNDKVIKK_					0	0	0		ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.201416015625	3	340.201229	1017.58186	-0.023056	-7.8437E-06	-0.046062	-1.567E-05	-0.069118	-2.3514E-05	340.2011903128305	12.748	0.24175	12.748	12.66	12.902	0					11	5	3	0	0	0	0.21263	1	2779	2779		85.862	27.632	1	1839400			38353	113	26261	26352	38825	38825					0.07377127989002474
SSNDWNVEK	9	Unmodified	_SSNDWNVEK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D82Ifs*30|1|0.43|ENSG00000151348|chr11:44107951-44107951|G/-|frameshift_variant;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7448120117188	2	539.743628	1077.4727	1.5841	0.000855	-0.58879	-0.00031779	0.99529	0.0005372	539.7433447995592	25.229	0.19521	25.229	25.152	25.347	0					8	5	2	0	0	0	0.026656	1	7562	7562		112.3	48.762	1	155000			38354	4957	26262	26353	38826	38826					-0.06293502701146281
SSNDWNVEK	9	Unmodified	_SSNDWNVEK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D82Ifs*30|1|0.43|ENSG00000151348|chr11:44107951-44107951|G/-|frameshift_variant;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7439575195312	2	539.743628	1077.4727	1.963	0.0010595	-1.1787	-0.00063619	0.7843	0.00042332	539.7429422299572	25.5	0.34158	25.5	25.374	25.716	0					19	8	4	0	0	0	0.01077	1	8712	8712		139.38	62.535	1	1026700			38355	4957	26262	26353	38827	38827					-0.06293502701146281
SSNDWNVEK	9	Unmodified	_SSNDWNVEK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D82Ifs*30|1|0.43|ENSG00000151348|chr11:44107951-44107951|G/-|frameshift_variant;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.744140625	2	539.743628	1077.4727	-0.081876	-4.4192E-05	0.6933	0.0003742	0.61142	0.00033001	539.7440906440354	25.256	0.19109	25.256	25.189	25.38	0					14	6	3	0	0	0	0.13109	1	7829	7829		72.243	13.461	1	184650			38356	4957	26262	26353	38828	38828					-0.06293502701146281
SSNDWNVEK	9	Unmodified	_SSNDWNVEK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D82Ifs*30|1|0.43|ENSG00000151348|chr11:44107951-44107951|G/-|frameshift_variant;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7437744140625	2	539.743628	1077.4727	1.9578	0.0010567	-1.2094	-0.00065276	0.74845	0.00040397	539.7428085666246	25.5	0.36245	25.5	25.392	25.755	0					15	7	3	0	0	0	0.013298	1	9071	9071		133.99	58.95	1	1289000			38357	4957	26262	26353	38829	38829					-0.06293502701146281
SSNDWNVEK	9	Unmodified	_SSNDWNVEK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D82Ifs*30|1|0.43|ENSG00000151348|chr11:44107951-44107951|G/-|frameshift_variant;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7440795898438	2	539.743628	1077.4727	1.022	0.00055162	-0.059026	-3.1859E-05	0.96298	0.00051976	539.743647741638	25.348	0.19135	25.348	25.252	25.443	0					9	4	3	0	0	0	0.046074	1	8057	8057		96.665	41.943	1	181500			38358	4957	26262	26353	38830	38830					-0.06293502701146281
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.76678466796875	2	483.766374	965.518196	0.021235	1.0273E-05	-0.27601	-0.00013353	-0.25478	-0.00012325	483.7662129515038	32.497	0.36651	32.497	32.422	32.788	0					42	15	4	0	0	0	0.039418	1	10498	10498		99.788	34.322	1	969410			38359	1994	26263	26354	38831	38831					0.03405767551896588
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.76629638671875	2	483.766374	965.518196	-0.09689	-4.6872E-05	-0.45902	-0.00022206	-0.55591	-0.00026893	483.76614694377776	32.773	0.42912	32.773	32.65	33.079	0					33	10	4	0	0	0	0.0093724	1	12456	12456		142.36	57.2	1	3596700			38360	1994	26263	26354	38832	38832					0.03405767551896588
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7664794921875	2	483.766374	965.518196	0.24943	0.00012066	-0.78451	-0.00037952	-0.53509	-0.00025886	483.7660094199162	32.562	0.33116	32.562	32.458	32.789	0					26	10	4	0	0	0	0.034688	1	11309	11309		104.42	24.711	1	1006400			38361	1994	26263	26354	38833	38833					0.03405767551896588
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.76629638671875	2	483.766374	965.518196	-0.59117	-0.00028599	0.10533	5.0956E-05	-0.48584	-0.00023503	483.7664191483009	32.729	0.84495	32.729	32.421	33.266	0					37	17	5	0	0	0	0.0059342	1	12352	12352		154.01	68.85	1	5762400			38362	1994	26263	26354	38834	38834					0.03405767551896588
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7662048339844	2	483.766374	965.518196	0.8727	0.00042218	-1.3703	-0.00066291	-0.49761	-0.00024073	483.7656713301087	32.763	0.36517	32.763	32.607	32.972	0					12	7	2	0	0	0	0.0093724	1	12368	12368		142.36	64.097	1	2197000			38363	1994	26263	26354	38835	38835					0.03405767551896588
SSNINPLGVP	10	Unmodified	_SSNINPLGVP_					0	0	0		tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2701416015625	2	499.269281	996.52401	-1.0566	-0.00052755	1.0709	0.00053466	0.014242	7.1107E-06	499.26987589671893	16.435	0.57331	16.435	16.263	16.836	0					51	20	4	0	0	0	0.59277	1	4082	4082		23.042	3.0457	1	10321000			38364	22810	26264	26355	38836	38836					0.025608660635725755
SSNKPAVTTK	10	Unmodified	_SSNKPAVTTK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7880859375	2	516.787838	1031.56112	1.2627	0.00065255	-1.2772	-0.00066002	-0.014452	-7.4684E-06	516.7873049152624	13.708	0.12787	13.708	13.665	13.793	0					5	3	2	0	0	0	0.27406	1	3192	3192		70.399	23.942	1	117920			38365	5871	26265	26356	38837	38837					0.04660537609311177
SSNKPAVTTK	10	Unmodified	_SSNKPAVTTK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7885131835938	2	516.787838	1031.56112	0.19861	0.00010264	0.40692	0.00021029	0.60553	0.00031293	516.7882342454036	13.629	0.15986	13.629	13.572	13.732	0					5	3	2	0	0	0	0.16075	1	3222	3222		84.817	27.006	1	91322			38366	5871	26265	26356	38838	38838					0.04660537609311177
SSNLFVTGK	9	Unmodified	_SSNLFVTGK_					0	0	0		ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.7583923339844	2	476.758549	951.502546	0.0049813	2.3749E-06	0.64732	0.00030861	0.6523	0.00031099	476.7590714082289	29.462	0.33529	29.462	29.388	29.723	0					16	11	3	0	0	0	0.029571	1	9292	9292		109.44	40.652	1	143250			38367	9653	26266	26357	38839	38839					0.024854810348642786
SSNLFVTGK	9	Unmodified	_SSNLFVTGK_					0	0	0		ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7583312988281	2	476.758549	951.502546	0.37552	0.00017903	0.035325	1.6842E-05	0.41084	0.00019587	476.75880041628665	29.737	0.44678	29.737	29.614	30.06	0					26	11	4	0	0	0	0.022589	1	10649	10649		117.71	34.955	1	819770			38368	9653	26266	26357	38840	38840					0.024854810348642786
SSNLFVTGK	9	Unmodified	_SSNLFVTGK_					0	0	0		ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7582702636719	2	476.758549	951.502546	-0.11818	-5.6345E-05	-0.35717	-0.00017029	-0.47536	-0.00022663	476.75827447762094	29.725	0.45957	29.725	29.616	30.076	0					14	9	3	0	0	0	0.0040239	1	11048	11048		162.64	64.007	1	564890			38369	9653	26266	26357	38841	38841					0.024854810348642786
SSNLFVTGK	9	Unmodified	_SSNLFVTGK_					0	0	0		ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7578430175781	2	476.758549	951.502546	-0.047715	-2.2748E-05	-1.3301	-0.00063413	-1.3778	-0.00065688	476.75796394491124	29.522	0.17749	29.522	29.426	29.604	0					7	4	2	0	0	0	0.052435	1	9933	9933		94.409	37.975	1	104260			38370	9653	26266	26357	38842	38842					0.024854810348642786
SSNLFVTGK	9	Unmodified	_SSNLFVTGK_					0	0	0		ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7584533691406	2	476.758549	951.502546	-0.36641	-0.00017469	2.2736	0.0010839	1.9071	0.00090925	476.75998364677815	29.505	0.36266	29.505	29.415	29.778	0					12	9	2	0	0	0	0.026656	1	9947	9947		112.3	52.177	1	76682			38371	9653	26266	26357	38843	38843					0.024854810348642786
SSNLFVTGK	9	Unmodified	_SSNLFVTGK_					0	0	0		ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	ENST00000451596.2_1_9:74929993-74930062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7583923339844	2	476.758549	951.502546	-0.63027	-0.00030049	0.83494	0.00039806	0.20467	9.7577E-05	476.75905251348496	29.692	0.36421	29.692	29.549	29.913	0					14	7	2	0	0	0	0.022589	1	10899	10899		117.71	50.212	1	651650			38372	9653	26266	26357	38844	38844					0.024854810348642786
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7587585449219	2	486.759081	971.503609	-0.31434	-0.00015301	-0.1712	-8.3333E-05	-0.48554	-0.00023634	486.7589910537535	19.302	0.5849	19.302	19.031	19.616	0					34	13	4	0	0	0	0.012231	1	5766	5766		136.27	48.572	1	7675600			38373	4044	26267	26358	38845	38845					0.016716954037633514
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7590637207031	2	486.759081	971.503609	-1.2429	-0.00060499	1.2106	0.00058929	-0.032246	-1.5696E-05	486.7596211937839	18.986	0.29947	18.986	18.827	19.126	0					30	9	4	0	0	0	0.085655	1	5034	5034		82.75	26.029	1	1002900			38374	4044	26267	26358	38846	38846					0.016716954037633514
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7593688964844	2	486.759081	971.503609	-0.90772	-0.00044184	-0.077316	-3.7634E-05	-0.98504	-0.00047948	486.7592947054406	18.989	0.24049	18.989	18.846	19.086	0					16	7	3	0	0	0	0.27249	1	5042	5042		52.937	5.2794	1	249030			38375	4044	26267	26358	38847	38847					0.016716954037633514
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7589416503906	2	486.759081	971.503609	0.63766	0.00031039	-0.68462	-0.00033325	-0.046967	-2.2862E-05	486.75867926911064	19.222	0.46209	19.222	18.967	19.43	0					28	9	4	0	0	0	0.013878	1	6024	6024		132.76	42.388	1	6309500			38376	4044	26267	26358	38848	38848					0.016716954037633514
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7587890625	2	486.759081	971.503609	-0.69711	-0.00033933	0.21874	0.00010647	-0.47837	-0.00023285	486.759237061517	19.205	0.36278	19.205	19.001	19.363	0					18	7	4	0	0	0	0.037924	1	6017	6017		101.25	39.145	1	1426800			38377	4044	26267	26358	38849	38849					0.016716954037633514
SSNNSLIVK	9	Unmodified	_SSNNSLIVK_					0	0	0		PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant;PCDH7|p.D918Ifs*209|1|0.36|ENSG00000169851|chr4:30724168-30724168|A/-|frameshift_variant;nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;PCDH7|p.H835Tfs*53|1|0.16|ENSG00000169851|chr4:31142537-31142537|C/-|frameshift_variant;ENSG00000169851|ENST00000695919|PCDH7;PCDH7|p.V732Cfs*4|1|0.45|ENSG00000169851|chr4:30723610-30723611|-/T|frameshift_variant	PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant	PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.268798828125	2	481.269281	960.52401	0.53018	0.00025516	-1.8599	-0.00089511	-1.3297	-0.00063995	481.2682706966064	11.794	0.11692	11.794	11.712	11.829	0					6	4	2	0	0	0	0.51991	1	2354	2354		30.318	4.7437	1	64601			38378	6188	26268	26359	38850	38850					0.04216866063575253
SSNQSLLL	8	Unmodified	_SSNQSLLL_					0	0	0		ENST00000403263.5_1_2:206867288-206867456:-|nuORF	ENST00000403263.5_1_2:206867288-206867456:-|nuORF	ENST00000403263.5_1_2:206867288-206867456:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.2353515625	2	431.23745	860.460347	0.19714	8.5015E-05	-3.3164	-0.0014301	-3.1192	-0.0013451	431.2360623746097	19.128	0.44823	19.128	18.858	19.306	0					15	10	2	0	0	0	0.72381	1	5102	5102		30.504	0	1	70411			38379	9262	26269	26360	38851	38851					0.024535056264994637
SSNRWSTY	8	Unmodified	_SSNRWSTY_					0	0	0			REV__ACVR2B|p.A61T|1|0.39|ENSG00000114739|chr3:38477415-38477415|G/A|missense_variant	REV__ACVR2B|p.A61T|1|0.39|ENSG00000114739|chr3:38477415-38477415|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7295227050781	2	500.727781	999.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.831	1	33.831	33.331	34.331	0								0	0	0	1.7419	1	11915	11915		37.159	2.9866	1		+		38380	12061	26270	26361	38852	38852					-0.05873450664421398
SSNSMQTIQK	10	Unmodified	_SSNSMQTIQK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000447938.1_1_21:21797263-21797497:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.2752685546875	2	562.274238	1122.53392	1.27	0.00071409	-1.0646	-0.00059862	0.20536	0.00011547	562.2738214652466	19.522	0.18089	19.522	19.455	19.636	0					15	5	4	0	0	0	0.0071914	1	5053	5053		157.34	40.441	1	1550500			38381	2650	26271	26362	38853	38853					-0.022443139933557177
SSNSMQTIQK	10	Unmodified	_SSNSMQTIQK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000447938.1_1_21:21797263-21797497:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2745361328125	2	562.274238	1122.53392	0.46006	0.00025868	-0.10447	-5.8741E-05	0.35559	0.00019994	562.2742964543835	19.86	0.29096	19.86	19.773	20.064	0					21	6	5	0	0	0	8.392E-16	1	6056	6056		232.72	122.6	1	9432000			38382	2650	26271	26362	38854	38854					-0.022443139933557177
SSNSMQTIQK	10	Unmodified	_SSNSMQTIQK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000447938.1_1_21:21797263-21797497:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.274169921875	2	562.274238	1122.53392	0.1301	7.3153E-05	-0.44322	-0.00024921	-0.31312	-0.00017606	562.2742359421561	19.558	0.21543	19.558	19.444	19.66	0					16	6	4	0	0	0	8.3919E-06	1	5311	5311		192.64	94.057	1	1176600			38383	2650	26271	26362	38855	38855					-0.022443139933557177
SSNSMQTIQK	10	Unmodified	_SSNSMQTIQK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000447938.1_1_21:21797263-21797497:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.2750244140625	2	562.274238	1122.53392	-0.40496	-0.0002277	0.62374	0.00035071	0.21878	0.00012302	562.2748159183012	19.552	0.11382	19.552	19.473	19.586	0					6	3	2	0	0	0	0.1998	1	5308	5308		79.489	13.06	1	145450			38384	2650	26271	26362	38856	38856					-0.022443139933557177
SSNSMQTIQK	10	Unmodified	_SSNSMQTIQK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000447938.1_1_21:21797263-21797497:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.274658203125	2	562.274238	1122.53392	1.8538	0.0010424	-1.9571	-0.0011004	-0.10323	-5.8045E-05	562.2734097347962	19.765	0.31852	19.765	19.609	19.927	0					17	6	5	0	0	0	2.0746E-16	1	6290	6290		237.51	120.61	1	6044200			38385	2650	26271	26362	38857	38857					-0.022443139933557177
SSNSMQTIQK	10	Unmodified	_SSNSMQTIQK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000447938.1_1_21:21797263-21797497:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.2745971679688	2	562.274238	1122.53392	0.041896	2.3557E-05	0.84841	0.00047704	0.89031	0.0005006	562.274627375194	19.749	0.16664	19.749	19.642	19.809	0					8	3	3	0	0	0	0.0021387	1	6306	6306		174.86	75.49	1	750710			38386	2650	26271	26362	38858	38858					-0.022443139933557177
SSNSMQTIQK	10	Unmodified	_SSNSMQTIQK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000447938.1_1_21:21797263-21797497:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.2744140625	2	562.274238	1122.53392	-0.96535	-0.00054279	1.0578	0.00059476	0.092431	5.1972E-05	562.2750911366547	19.613	0.22383	19.613	19.479	19.703	0					14	5	4	0	0	0	3.8571E-10	1	5345	5345		218.94	89.26	1	1199500			38387	2650	26271	26362	38859	38859					-0.022443139933557177
SSNSSPIGK	9	Unmodified	_SSNSSPIGK_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7244873046875	2	438.724707	875.43486	0.58972	0.00025873	-0.64062	-0.00028105	-0.050892	-2.2328E-05	438.72452797807256	16.624	0.33741	16.624	16.492	16.83	0					14	8	3	0	0	0	0.021015	1	4552	4552		120.31	21.677	1	475360			38388	1637	26272	26363	38860	38860					-0.007839688959279556
SSNSSPIGK	9	Unmodified	_SSNSSPIGK_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.7242736816406	2	438.724707	875.43486	-0.3835	-0.00016825	-0.19073	-8.3679E-05	-0.57423	-0.00025193	438.7246317687238	16.539	0.16645	16.539	16.48	16.647	0					8	3	3	0	0	0	0.13109	1	4758	4758		72.243	22.707	1	226560			38389	1637	26272	26363	38861	38861					-0.007839688959279556
SSNSSPIGK	9	Unmodified	_SSNSSPIGK_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.7243347167969	2	438.724707	875.43486	-0.57788	-0.00025353	0.24912	0.00010929	-0.32876	-0.00014424	438.7247916621994	16.557	0.26286	16.557	16.451	16.714	0					9	5	2	0	0	0	0.020674	1	4619	4619		120.87	10.749	1	316380			38390	1637	26272	26363	38862	38862					-0.007839688959279556
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2697448730469	2	499.269281	996.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.437	1	16.437	15.937	16.937	0								0	0	0	0.17166	1	3739	3739		47.96	23.44	1				38391	1704	26273	26364	38863	38863					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.771728515625	2	499.269281	996.52401	-0.051123	-2.5524E-05	-0.20763	-0.00010366	-0.25875	-0.00012919	499.2692344717975	16.419	0.62031	16.419	16.339	16.959	0					58	23	5	0	0	0	0.13109	2	3712	3712;3898		56.434	15.656	1	10021000			38392	1704	26273	26364	38864;38865	38864					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2695007324219	2	499.269281	996.52401	0.6756	0.00033731	-0.60624	-0.00030268	0.069363	3.4631E-05	499.2691620286102	16.711	0.13157	16.711	16.62	16.752	0					6	3	2	0	0	0	0.079477	1	4594	4594		88.177	28.059	1	497810			38393	1704	26273	26364	38866	38866					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.26910400390625	2	499.269281	996.52401	-0.20771	-0.00010371	-0.25648	-0.00012805	-0.46419	-0.00023176	499.26912954644274	16.699	1.2544	16.699	16.521	17.776	0					75	31	5	0	0	0	0.0016406	1	4563	4563		160.82	59.569	1	59312000			38394	1704	26273	26364	38867	38867					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	333.1819763183594	3	333.181946	996.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.426	1	16.426	15.926	16.926	0								0	0	0	0.045272	1	3937	3937		88.177	33.455	1				38395	1704	26273	26364	38868	38868					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2690734863281	2	499.269281	996.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.434	1	16.434	15.934	16.934	0								0	0	0	0.241	1	3940	3940		30.318	7.2752	1				38396	1704	26273	26364	38869	38869					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.26885986328125	2	499.269281	996.52401	-1.0566	-0.00052755	1.0709	0.00053466	0.014242	7.1107E-06	499.26987589671893	16.435	0.57331	16.435	16.263	16.836	0					51	20	4	0	0	0	0.012115	1	3915	3915		131.62	30.364	1	10321000			38397	1704	26273	26364	38870	38870					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2688903808594	2	499.269281	996.52401	-1.1988	-0.00059852	-0.11547	-5.7651E-05	-1.3143	-0.00065617	499.2691213655265	16.425	0.069649	16.425	16.361	16.43	0					6	2	3	0	0	0	0.061298	1	3926	3926		85.161	23.053	1	427060			38398	1704	26273	26364	38871	38871					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.1820068359375	3	333.181946	996.52401	0.38893	0.00012959	-0.71399	-0.00023789	-0.32505	-0.0001083	333.1817766173562	16.638	0.30357	16.638	16.531	16.835	0					19	6	4	0	0	0	0.067603	1	4782	4782		89.029	33.945	1	16283000			38399	1704	26273	26364	38872	38872					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.1818542480469	3	333.181946	996.52401	0.38913	0.00012965	0.062591	2.0854E-05	0.45173	0.00015051	333.1820532486424	16.972	0.21802	16.972	16.863	17.081	0					6	4	2	0	0	0	0.48623	1	4972	4972		33.922	9.4024	1	78416			38400	1704	26273	26364	38873	38873					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2700500488281	2	499.269281	996.52401	0.86187	0.00043031	-0.82997	-0.00041438	0.031899	1.5926E-05	499.26930773610616	16.621	0.85462	16.621	16.463	17.318	0					50	17	6	0	0	0	0.00040135	1	4794	4794		186.41	79.403	1	60206000			38401	1704	26273	26364	38874	38874					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.26904296875	2	499.269281	996.52401	-0.65892	-0.00032898	-2.3069	-0.0011518	-2.9659	-0.0014808	499.26786279696347	16.655	0.11728	16.655	16.547	16.664	0					6	2	3	0	0	0	0.01776	1	4788	4788		109.44	8.1862	1	2276600			38402	1704	26273	26364	38875	38875					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.18182373046875	3	333.181946	996.52401	0.55684	0.00018553	-0.70938	-0.00023635	-0.15254	-5.0823E-05	333.18170058225684	16.487	0.37697	16.487	16.385	16.762	0					19	11	4	0	0	0	0.029571	1	3899	3899		109.44	54.662	1	1601600			38403	1704	26273	26364	38876	38876					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.181884765625	3	333.181946	996.52401	-0.036091	-1.2025E-05	-0.19484	-6.4917E-05	-0.23093	-7.6942E-05	333.1819315157325	16.484	0.16292	16.484	16.403	16.566	0					14	4	4	0	0	0	0.082776	1	3907	3907		83.647	37.19	1	387390			38404	1704	26273	26364	38877	38877					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.26995849609375	2	499.269281	996.52401	0.16644	8.3099E-05	0.55606	0.00027762	0.7225	0.00036072	499.2697356540412	16.483	0.12396	16.483	16.403	16.527	0					5	3	2	0	0	0	0.44949	1	3929	3929		37.812	6.2817	1	56681			38405	1704	26273	26364	38878	38878					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.18194580078125	3	333.181946	996.52401	-0.0080218	-2.6727E-06	-0.33429	-0.00011138	-0.34231	-0.00011405	333.18198284690453	16.658	0.94943	16.658	16.549	17.498	0					40	19	4	0	0	0	0.040209	1	4641	4641		99.013	38.895	1	35628000			38406	1704	26273	26364	38879	38879					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.26922607421875	2	499.269281	996.52401	-0.73632	-0.00036762	0.8483	0.00042353	0.11198	5.5911E-05	499.26964055526327	16.658	0.1648	16.658	16.549	16.714	0					5	3	2	0	0	0	0.17062	1	4667	4667		58.23	13.853	1	405240			38407	1704	26273	26364	38880	38880					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2692565917969	2	499.269281	996.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.668	1	16.668	16.168	17.168	0								0	0	0	0.00095576	1	4660	4660		126.24	53.363	1				38408	1704	26273	26364	38881	38881					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.26995849609375	2	499.269281	996.52401	2.9179	0.0014568	-2.9883	-0.001492	-0.070483	-3.519E-05	499.26787742083224	16.673	1.3009	16.673	16.466	17.767	0					54	26	3	0	0	0	0.00040135	1	4648	4648		186.41	85.158	1	66875000			38409	1704	26273	26364	38882	38882					0.025608660635725755
SSNVQVMLK	9	Unmodified	_SSNVQVMLK_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2733459472656	2	503.273509	1004.53247	0.57264	0.0002882	0.33919	0.0001707	0.91183	0.0004589	503.27331140200556	28.409	0.24538	28.409	28.248	28.493	0					11	8	2	0	0	0	0.085655	2	8886	8867;8886		82.75	18.543	1	96930			38410	9687	26274	26365	38883;38884	38884					0.030380967085420707
SSNVQVMLK	9	Unmodified	_SSNVQVMLK_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.27392578125	2	503.273509	1004.53247	0.1296	6.5222E-05	1.0029	0.00050472	1.1325	0.00056995	503.2741143648468	28.481	0.32536	28.481	28.325	28.651	0					11	8	2	0	0	0	0.10506	1	9468	9468		78.264	20.034	1	158740			38411	9687	26274	26365	38885	38885					0.030380967085420707
SSNVVHLIK	9	Unmodified	_SSNVVHLIK_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.7953186035156	2	498.795466	995.57638	-0.23619	-0.00011781	-0.91751	-0.00045765	-1.1537	-0.00057546	498.79549925349073	25.45	0.17908	25.45	25.362	25.541	0					7	4	2	0	0	0	0.14578	1	8704	8704		68.846	19.405	1	348410			38412	5352	26275	26366	38886	38886					0.078414491972012
SSNVVHLIK	9	Unmodified	_SSNVVHLIK_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.79559326171875	2	498.795466	995.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.452	1	25.452	24.952	25.952	0								0	0	0	0.051298	1	9035	9035		85.862	20.059	1				38413	5352	26275	26366	38887	38887					0.078414491972012
SSPASKTTL	9	Unmodified	_SSPASKTTL_					0	0	0		ENSG00000162437|ENST00000294428|RAVER2;nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENST00000418058.1_1_1:65270770-65280577:+|nuORF	ENSG00000162437|ENST00000294428|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.2424621582031	2	446.242732	890.470912	-0.29722	-0.00013263	-0.18774	-8.3777E-05	-0.48496	-0.00021641	446.2426332356618	19.732	0.31241	19.732	19.517	19.829	0					21	9	3	0	0	0	0.30841	1	5121	5121		49.536	13.918	1	638250			38414	5464	26276	26367	38888	38888					0.021294882809115734
SSPASKTTL	9	Unmodified	_SSPASKTTL_					0	0	0		ENSG00000162437|ENST00000294428|RAVER2;nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENST00000418058.1_1_1:65270770-65280577:+|nuORF	ENSG00000162437|ENST00000294428|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2424011230469	2	446.242732	890.470912	-0.40851	-0.0001823	-0.10604	-4.7319E-05	-0.51455	-0.00022962	446.24265910296947	20.059	0.48711	20.059	19.852	20.339	0					30	10	4	0	0	0	0.21419	1	6128	6128		59.931	15.554	1	3377400			38415	5464	26276	26367	38889	38889					0.021294882809115734
SSPASKTTL	9	Unmodified	_SSPASKTTL_					0	0	0		ENSG00000162437|ENST00000294428|RAVER2;nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENST00000418058.1_1_1:65270770-65280577:+|nuORF	ENSG00000162437|ENST00000294428|RAVER2	ENSG00000162437|ENST00000294428|RAVER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.2420349121094	2	446.242732	890.470912	-0.44344	-0.00019788	0.066339	2.9603E-05	-0.3771	-0.00016828	446.2427766720108	19.787	0.27144	19.787	19.617	19.889	0					16	6	3	0	0	0	0.36135	1	5416	5416		45.022	7.2107	1	405650			38416	5464	26276	26367	38890	38890					0.021294882809115734
SSPCHIEM	8	Carbamidomethyl (C)	_SSPC(Carbamidomethyl (C))HIEM_	SSPC(1)HIEM		SSPC(82)HIEM		0	1	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.69903564453125	2	480.69932	959.384087	-0.15825	-7.6069E-05	-1.006	-0.00048356	-1.1642	-0.00055963	480.6992042051047	26.666	0.40342	26.666	26.523	26.927	0					31	9	5	0	0	0	0.30437	1	9212	9212		82.305	22.011	1	3891200			38417	8068	26277	26368	38891	38891	351				-0.09722957536803278
SSPCHIEM	8	Carbamidomethyl (C)	_SSPC(Carbamidomethyl (C))HIEM_	SSPC(1)HIEM		SSPC(77)HIEM		0	1	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.69903564453125	2	480.69932	959.384087	0.67922	0.0003265	-1.9337	-0.00092953	-1.2545	-0.00060303	480.69872123033946	26.719	0.56814	26.719	26.41	26.978	0					28	11	4	0	0	0	0.34985	1	9562	9562		76.847	20.413	1	3943100			38418	8068	26277	26368	38892	38892	351				-0.09722957536803278
SSPCHIEM	8	Carbamidomethyl (C)	_SSPC(Carbamidomethyl (C))HIEM_	SSPC(1)HIEM		SSPC(58)HIEM		0	1	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.6990661621094	2	480.69932	959.384087	-2.9247	-0.0014059	2.2738	0.001093	-0.65087	-0.00031287	480.7006092738832	26.503	0.31675	26.503	26.37	26.687	0					21	7	4	0	0	0	0.52345	1	8513	8513		57.811	7.7867	1	740870			38419	8068	26277	26368	38893	38893	351				-0.09722957536803278
SSPCHIEM	8	Carbamidomethyl (C)	_SSPC(Carbamidomethyl (C))HIEM_	SSPC(1)HIEM		SSPC(82)HIEM		0	1	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.6993103027344	2	480.69932	959.384087	2.3344	0.0011222	-3.5597	-0.0017112	-1.2253	-0.000589	480.6979777809919	26.628	0.46699	26.628	26.469	26.936	0					31	9	5	0	0	0	0.30437	1	9416	9416		82.305	32.28	1	5474100			38420	8068	26277	26368	38894	38894	351				-0.09722957536803278
SSPEKAASL	9	Unmodified	_SSPEKAASL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2347106933594	2	445.234907	888.455261	0.18804	8.372E-05	0.21205	9.4413E-05	0.40009	0.00017813	445.2351856416755	21.219	0.29915	21.219	20.99	21.289	0					13	8	2	0	0	0	0.48389	1	5803	5803		34.173	1.3601	1	68689			38421	3420	26278	26369	38895	38895					0.006572017638518446
SSPEKAASL	9	Unmodified	_SSPEKAASL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.23486328125	2	445.234907	888.455261	0.5958	0.00026527	-0.51356	-0.00022866	0.082235	3.6614E-05	445.23467060514054	21.538	0.31359	21.538	21.311	21.624	0					19	7	4	0	0	0	0.19952	1	6847	6847		61.691	2.9093	1	611320			38422	3420	26278	26369	38896	38896					0.006572017638518446
SSPEKAASL	9	Unmodified	_SSPEKAASL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2347106933594	2	445.234907	888.455261	-0.46207	-0.00020573	0.16267	7.2425E-05	-0.29941	-0.00013331	445.2350587421178	21.446	0.36498	21.446	21.19	21.555	0					17	7	3	0	0	0	0.30841	1	6973	6973		49.536	13.089	1	594540			38423	3420	26278	26369	38897	38897					0.006572017638518446
SSPFKVSPL	9	Unmodified	_SSPFKVSPL_					0	0	0		ENSG00000168497|ENST00000304141|CAVIN2	ENSG00000168497|ENST00000304141|CAVIN2	ENSG00000168497|ENST00000304141|CAVIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2708435058594	2	481.271293	960.528032	0.91291	0.00043936	-1.3235	-0.00063698	-0.41064	-0.00019763	481.2704414336396	38.973	0.57028	38.973	38.778	39.348	0					31	12	5	0	0	0	0.24334	1	15332	15332		56.434	5.2411	1	1595800			38424	6097	26279	26370	38898	38898					0.046189555572937024
SSPGTARTL	9	Unmodified	_SSPGTARTL_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.24041748046875	2	445.240524	888.466495	-0.38856	-0.000173	0.0021245	9.4594E-07	-0.38643	-0.00017206	445.2405737892698	20.316	0.16126	20.316	20.226	20.387	0					5	3	2	0	0	0	0.43488	1	6280	6280		38.754	8.4359	1	328700			38425	3057	26280	26371	38899	38899					0.017800238579980032
SSPLANQSL	9	Unmodified	_SSPLANQSL_					0	0	0		ENSG00000141627|ENST00000675505|DYM;nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.74005126953125	2	458.740357	915.46616	-0.41556	-0.00019063	0.33297	0.00015274	-0.082591	-3.7888E-05	458.74048277587394	34.476	0.2938	34.476	34.338	34.631	0					18	13	2	0	0	0	0.44593	1	11270	11270		37.812	3.639	1	61290			38426	4461	26281	26372	38900	38900					0.005046041381433497
SSPLPSPAPS	10	Unmodified	_SSPLPSPAPS_					0	0	0		TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant;ENSG00000188807|ENST00000340381|TMEM201	TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant	TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2425231933594	2	470.242732	938.470912	0.17297	8.1336E-05	-0.93093	-0.00043776	-0.75796	-0.00035643	470.24235851449987	21.015	0.6557	21.015	20.748	21.404	0					35	15	4	0	0	0	0.28036	1	6602	6602		69.628	5.4204	1	2372900			38427	7273	26282	26373	38901	38901					-0.0007851171909578625
SSPLSKEL	8	Unmodified	_SSPLSKEL_					0	0	0		ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000578115.1_1_17:8285406-8285628:-|nuORF;ENST00000451325.1_1_10:5346696-5346741:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	ENST00000602923.1_1_11:2356544-2356979:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7395935058594	2	430.739825	859.465098	-0.52452	-0.00022593	0.25941	0.00011174	-0.26511	-0.00011419	430.7399353223654	29.438	0.62105	29.438	29.073	29.694	0					48	15	4	0	0	0	0.39125	1	10446	10446		71.877	18.526	1	2064100			38428	1176	26283	26374	38902	38902					0.029743897692469545
SSPPPCQLTPG	11	Unmodified	_SSPPPCQLTPG_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2625122070312	2	542.260599	1082.50665	1.8874	0.0010235	1.5194	0.00082391	3.4068	0.0018474	542.2615761614186	14.657	0.25641	14.657	14.578	14.834	0					15	6	4	0	0	0	0.12944	1	3632	3632		82.75	9.8712	1	1742000	+		38429	14433	26284	26375	38903	38903					-0.03130797533754048
SSPPPCQLTPG	11	Unmodified	_SSPPPCQLTPG_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.2628173828125	2	542.260599	1082.50665	0.21262	0.0001153	3.9245	0.0021281	4.1371	0.0022434	542.2629100074423	14.331	0.17709	14.331	14.252	14.429	0					16	7	3	0	0	0	0.10624	1	3093	3093		88.177	9.9132	1	597830	+		38430	14433	26284	26375	38904	38904					-0.03130797533754048
SSPPPCQLTPG	11	Unmodified	_SSPPPCQLTPG_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2634887695312	2	542.260599	1082.50665	1.0635	0.00057671	3.4235	0.0018564	4.487	0.0024331	542.2628215588326	14.375	0.1821	14.375	14.312	14.494	0					12	7	3	0	0	0	0.21174	1	3044	3044		72.879	5.3856	1	478410	+		38431	14433	26284	26375	38905	38905					-0.03130797533754048
SSPPPCQLTPG	11	Unmodified	_SSPPPCQLTPG_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2632446289062	2	542.260599	1082.50665	2.0375	0.0011049	1.0646	0.00057731	3.1022	0.0016822	542.2613314866957	14.6	0.36842	14.6	14.491	14.86	0					16	7	3	0	0	0	0.035029	1	3658	3658		112.41	2.9326	1	6121300	+		38432	14433	26284	26375	38906	38906					-0.03130797533754048
SSPPPCQLTPG	11	Unmodified	_SSPPPCQLTPG_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2626342773438	2	542.260599	1082.50665	3.5745	0.0019383	-0.34921	-0.00018936	3.2253	0.001749	542.2606820027095	14.583	0.26898	14.583	14.525	14.794	0					10	5	3	0	0	0	0.096315	1	3672	3672		90.601	7.8504	1	1782500	+		38433	14433	26284	26375	38907	38907					-0.03130797533754048
SSPPPTLSRQ	10	Unmodified	_SSPPPTLSRQ_					0	0	0			REV__TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant	REV__TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.192626953125	3	357.192734	1068.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.852	1	11.852	11.352	12.352	0								0	0	0	0.38475	1	2270	2270		35.152	2.4015	1		+		38434	13521	26285	26376	38908	38908					0.024836534665837462
SSPPQRYGVL	10	Unmodified	_SSPPQRYGVL_					0	0	0			REV__ENSG00000184221|ENST00000382348|OLIG1	REV__ENSG00000184221|ENST00000382348|OLIG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.5329284667969	3	368.532979	1102.57711	-0.20886	-7.6971E-05	0.34204	0.00012605	0.13318	4.9082E-05	368.5330556534734	23.243	0.31752	23.243	23.133	23.451	0					9	6	2	0	0	0	0.65051	1	7864	7864		28.081	0	1	376420	+		38435	16971	26286	26377	38909	38909					0.029922438462335776
SSPPSLPAPS	10	Unmodified	_SSPPSLPAPS_					0	0	0		ENST00000521594.1_1_5:150076301-150080167:-|nuORF	ENST00000521594.1_1_5:150076301-150080167:-|nuORF	ENST00000521594.1_1_5:150076301-150080167:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.24249267578125	2	470.242732	938.470912	-0.6206	-0.00029183	-0.57154	-0.00026876	-1.1921	-0.00056059	470.2428071498981	20.776	0.29348	20.776	20.599	20.893	0					16	6	4	0	0	0	0.47859	1	5919	5919		47.657	0	1	370120			38436	10315	26287	26378	38910	38910					-0.0007851171909578625
SSPPSPSVSSE	11	Unmodified	_SSPPSPSVSSE_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.7444458007812	2	530.743293	1059.47203	0.41602	0.0002208	1.0681	0.00056688	1.4841	0.00078768	530.7437944005676	24.612	0.15435	24.612	24.53	24.684	0					7	4	2	0	0	0	0.33926	1	7281	7281		58.23	7.0372	1	284040			38437	3403	26288	26379	38911	38911					-0.05532342140827495
SSPPSPSVSSE	11	Unmodified	_SSPPSPSVSSE_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.744140625	2	530.743293	1059.47203	0.11806	6.2661E-05	1.1003	0.00058397	1.2184	0.00064664	530.744156084642	24.9	0.32951	24.9	24.773	25.102	0					22	8	4	0	0	0	0.47622	1	8445	8445		45.972	0	1	1767000			38438	3403	26288	26379	38912	38912					-0.05532342140827495
SSPQAGSSL	9	Unmodified	_SSPQAGSSL_					0	0	0		ENST00000545522.2_1_19:19304755-19308134:+|nuORF;RFXANK|p.H151Pfs*30|1|0.26|ENSG00000064490|chr19:19198114-19198115|-/C|frameshift_variant;nc|ENSG00000064490|O14593-3|RFXANK;ENSG00000064490|ENST00000303088|RFXANK	ENST00000545522.2_1_19:19304755-19308134:+|nuORF	ENST00000545522.2_1_19:19304755-19308134:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.20361328125	2	417.203607	832.392661	-0.82879	-0.00034578	0.88402	0.00036882	0.055222	2.3039E-05	417.20385477269616	24.063	0.79203	24.063	23.949	24.741	0					26	18	3	0	0	0	0.43488	1	8056	8056		38.754	7.2238	1	295580			38439	1349	26289	26380	38913	38913					-0.030239443043228675
SSPQPGSAL	9	Unmodified	_SSPQPGSAL_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;ARID1A|p.K1072Nfs*21|3|0.25|ENSG00000117713|chr1:26771131-26771131|A/-|frameshift_variant;ARID1A|p.A1077Gfs*28|1|0.28|ENSG00000117713|chr1:26771148-26771149|-/G|frameshift_variant	nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.2138671875	2	422.213975	842.413397	-0.20376	-8.6029E-05	0.082234	3.472E-05	-0.12152	-5.1308E-05	422.21400634228286	27.638	0.24035	27.638	27.606	27.847	0					12	7	2	0	0	0	0.16806	1	8546	8546		65.465	10.689	1	297970			38440	220	26290	26381	38914	38914					-0.01411353924663672
SSPQPGSAL	9	Unmodified	_SSPQPGSAL_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;ARID1A|p.K1072Nfs*21|3|0.25|ENSG00000117713|chr1:26771131-26771131|A/-|frameshift_variant;ARID1A|p.A1077Gfs*28|1|0.28|ENSG00000117713|chr1:26771148-26771149|-/G|frameshift_variant	nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.21380615234375	2	422.213975	842.413397	-0.88034	-0.00037169	0.52891	0.00022331	-0.35142	-0.00014838	422.21418137700556	27.964	0.34579	27.964	27.862	28.208	0					19	8	3	0	0	0	0.095583	1	9818	9818		80.455	11.668	1	670510			38441	220	26290	26381	38915	38915					-0.01411353924663672
SSPQQPPQS	9	Unmodified	_SSPQQPPQS_					0	0	0			REV__TAB3|p.Y613Mfs*4|1|0.37|ENSG00000157625|chrX:30843017-30843017|A/-|frameshift_variant	REV__TAB3|p.Y613Mfs*4|1|0.37|ENSG00000157625|chrX:30843017-30843017|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2278137207031	2	478.227613	954.440674	0.015824	7.5673E-06	1.6215	0.00077545	1.6373	0.00078302	478.22849464155104	24.544	0.29715	24.544	24.367	24.664	0					14	8	2	0	0	0	0.35021	1	7252	7252		45.972	0.020292	1	152390	+		38442	15663	26291	26382	38916	38916					-0.038368703842706964
SSPQTETSK	9	Unmodified	_SSPQTETSK_					0	0	0			REV__nc|ENSG00000164323|Q9P2B7-2|CFAP97	REV__nc|ENSG00000164323|Q9P2B7-2|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.73260498046875	2	482.732729	963.450904	-0.60779	-0.0002934	0.32658	0.00015765	-0.28121	-0.00013575	482.7329286854184	16.658	0.26458	16.658	16.499	16.763	0					13	5	3	0	0	0	0.16806	1	4670	4670		65.465	5.3471	1	235620	+		38443	15982	26292	26383	38917	38917					-0.03228307449694512
SSPRSSLNK	9	Unmodified	_SSPRSSLNK_					0	0	0			REV__ENST00000606797.5_1_6:149642468-149663891:+|nuORF	REV__ENST00000606797.5_1_6:149642468-149663891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.264404296875	2	488.26453	974.514508	-0.52211	-0.00025493	0.11386	5.5592E-05	-0.40825	-0.00019933	488.26453953466495	14.112	0.11052	14.112	14.01	14.12	0					6	2	3	0	0	0	0.070005	1	3424	3424		88.177	0	1	332460	+		38444	20619	26293	26384	38918	38918					0.026230977780642206
SSPSPPPALL	10	Unmodified	_SSPSPPPALL_					0	0	0		CNDP1|p.A90Pfs*62|1|0.38|ENSG00000150656|chr18:74559433-74559433|G/-|frameshift_variant;CNDP1|p.D222Vfs*2|1|0.05|ENSG00000150656|chr18:74567340-74567341|-/GTTT|frameshift_variant;ENSG00000150656|ENST00000358821|CNDP1	CNDP1|p.A90Pfs*62|1|0.38|ENSG00000150656|chr18:74559433-74559433|G/-|frameshift_variant	CNDP1|p.A90Pfs*62|1|0.38|ENSG00000150656|chr18:74559433-74559433|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.51348876953125	3	322.514925	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.79	1	12.79	12.29	13.29	0								0	0	0	0.4044	1	2766	2766		29.17	1.2878	1				38445	568	26294	26385	38919	38919					0.03926651694678185
SSPSYENSL	9	Unmodified	_SSPSYENSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2191467285156	2	492.219454	982.424355	-0.54798	-0.00026973	0.32989	0.00016238	-0.21808	-0.00010735	492.2194095274595	33.413	0.41172	33.413	33.248	33.659	0					28	10	3	0	0	0	0.026538	1	12343	12343		112.41	27.495	1	449370			38446	4371	26295	26386	38920	38920					-0.06755996341030368
SSPSYENSL	9	Unmodified	_SSPSYENSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.21923828125	2	492.219454	982.424355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.206	1	33.206	32.706	33.706	0								0	0	0	0.088368	1	11628	11628		75.043	10.836	1				38447	4371	26295	26386	38921	38921					-0.06755996341030368
SSPTGRRASP	10	Unmodified	_SSPTGRRASP_					0	0	0		RBM24|p.L18Cfs*66|1|0.05|ENSG00000112183|chr6:17281627-17281627|G/-|frameshift_variant	RBM24|p.L18Cfs*66|1|0.05|ENSG00000112183|chr6:17281627-17281627|G/-|frameshift_variant	RBM24|p.L18Cfs*66|1|0.05|ENSG00000112183|chr6:17281627-17281627|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.31640625	2	508.267604	1014.52066	1.1343	0.00057651	1.6364	0.00083171	2.7706	0.0014082	508.2684755430306	22.213	0.11537	22.213	22.153	22.269	0					4	2	2	0	0	0	0.32758	1	7470	7470		64.207	0.67341	1	341410			38448	12008	26296	26387	38922	38922					0.013976160095694468
SSPVAKIGA	9	Unmodified	_SSPVAKIGA_					0	0	0			REV__DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	REV__DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.242431640625	2	415.242535	828.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.339	1	25.339	24.839	25.839	0								0	0	0	0.21054	1	7872	7872		49.442	5.3247	1		+		38449	12742	26297	26388	38923	38923					0.049421133517171256
SSPVVHQSL	9	Unmodified	_SSPVVHQSL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14;PTPN14|p.M845Rfs*2|1|0.04|ENSG00000152104|chr1:214383321-214383322|-/TC|frameshift_variant	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2559814453125	2	477.256174	952.497795	-0.33785	-0.00016124	-0.72534	-0.00034617	-1.0632	-0.00050741	477.2560948959555	24.781	0.17677	24.781	24.687	24.864	0					6	4	2	0	0	0	0.30841	1	8395	8395		49.536	7.1399	1	416590			38450	4996	26298	26389	38924	38924					0.019645968920940504
SSQGFMHMK	9	Unmodified	_SSQGFMHMK_					0	0	0		nc|ENSG00000138606|Q7M4L6-2|SHF;nc|ENSG00000138606|Q7M4L6|SHF;ENSG00000138606|ENST00000690270|SHF	nc|ENSG00000138606|Q7M4L6-2|SHF	nc|ENSG00000138606|Q7M4L6-2|SHF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.8042602539062	2	526.736237	1051.45792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.017	1	24.017	23.517	24.517	0								0	0	0	0.23445	1	8353	8353		45.972	3.5761	1				38451	4269	26299	26390	38925	38925					-0.06574989374485085
SSQGVAEAQL	10	Unmodified	_SSQGVAEAQL_					0	0	0			REV__ENSG00000122574|ENST00000242140|WIPF3	REV__ENSG00000122574|ENST00000242140|WIPF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.5005798339844	3	330.501456	988.482539	0.27638	9.1343E-05	-2.0651	-0.00068251	-1.7887	-0.00059117	330.5007740964761	22.558	0.10016	22.558	22.494	22.594	0					5	3	2	0	0	0	0.63019	1	6389	6389		30.569	1.4193	1	77435	+		38452	14336	26300	26391	38926	38926					-0.012163146957732351
SSQLIIMLFK	10	Unmodified	_SSQLIIMLFK_					0	0	0		TDRD1|p.L1075F|1|0.5|ENSG00000095627|chr10:114227121-114227121|A/T|missense_variant	TDRD1|p.L1075F|1|0.5|ENSG00000095627|chr10:114227121-114227121|A/T|missense_variant	TDRD1|p.L1075F|1|0.5|ENSG00000095627|chr10:114227121-114227121|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.8996276855469	3	393.898382	1178.67332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.482	1	17.482	16.982	17.982	0								0	0	0	0.37293	1	5199	5199		38.754	3.258	1				38453	22519	26301	26392	38927	38927					0.09112675361939182
SSQLSPAALL	10	Unmodified	_SSQLSPAALL_					0	0	0			REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.77874755859375	2	493.779482	985.544411	-0.068588	-3.3867E-05	-0.5133	-0.00025346	-0.58189	-0.00028733	493.77921819550863	27.926	0.59797	27.926	27.708	28.306	0					48	20	3	0	0	0	0.54197	1	8780	8780		40.778	6.6056	1	164480	+		38454	19994	26302	26393	38928	38928					0.05106036723384477
SSQNAFMQK	9	Unmodified	_SSQNAFMQK_					0	0	0		ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7451171875	2	520.745116	1039.47568	0.70918	0.0003693	-0.35991	-0.00018742	0.34927	0.00018188	520.7448125420536	22.516	0.17088	22.516	22.423	22.594	0					11	5	3	0	0	0	0.18416	1	6388	6388		63.534	17.582	1	96363			38455	10461	26303	26394	38929	38929					-0.04247950847980064
SSQNAFMQK	9	Unmodified	_SSQNAFMQK_					0	0	0		ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7455444335938	2	520.745116	1039.47568	0.071815	3.7397E-05	0.3629	0.00018898	0.43472	0.00022638	520.7453895158416	22.842	0.21326	22.842	22.756	22.969	0					16	5	4	0	0	0	0.017421	1	7486	7486		126.24	49.468	1	902890			38456	10461	26303	26394	38930	38930					-0.04247950847980064
SSQNAFMQK	9	Unmodified	_SSQNAFMQK_					0	0	0		ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7455444335938	2	520.745116	1039.47568	0.29392	0.00015306	0.59215	0.00030836	0.88607	0.00046142	520.7454385048865	22.568	0.16784	22.568	22.47	22.638	0					13	5	3	0	0	0	0.037924	1	6655	6655		101.25	40.959	1	201440			38457	10461	26303	26394	38931	38931					-0.04247950847980064
SSQNAFMQK	9	Unmodified	_SSQNAFMQK_					0	0	0		ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7454833984375	2	520.745116	1039.47568	1.7069	0.00088887	-1.452	-0.00075611	0.25494	0.00013276	520.7446383255358	22.751	0.41708	22.751	22.644	23.061	0					14	8	3	0	0	0	0.0016668	1	7760	7760		176.44	77.815	1	1261500			38458	10461	26303	26394	38932	38932					-0.04247950847980064
SSQNAFMQK	9	Unmodified	_SSQNAFMQK_					0	0	0		ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	ENST00000533415.5_1_17:45247369-45258963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7449951171875	2	520.745116	1039.47568	-1.3412	-0.00069841	1.9945	0.0010386	0.65328	0.00034019	520.7462106221402	22.644	0.23545	22.644	22.545	22.781	0					8	5	2	0	0	0	0.04067	1	6788	6788		98.582	39.8	1	179770			38459	10461	26303	26394	38933	38933					-0.04247950847980064
SSQNFTLTK	9	Unmodified	_SSQNFTLTK_					0	0	0		ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL;ENST00000377503.6_1_5:159681329-159707642:-|nuORF;CCNJL|p.V393Rfs*8|1|0.23|ENSG00000135083|chr5:160253509-160253510|-/G|frameshift_variant	ENSG00000135083|ENST00000257536|CCNJL	ENSG00000135083|ENST00000257536|CCNJL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2659912109375	2	513.266739	1024.51892	1.2324	0.00063256	-1.3066	-0.00067063	-0.074184	-3.8076E-05	513.2661689337426	26.391	0.13097	26.391	26.328	26.459	0					7	4	2	0	0	0	0.24169	1	8011	8011		56.632	5.4396	1	70711			38460	3963	26304	26395	38934	38934					0.007645622009249564
SSQNFTLTK	9	Unmodified	_SSQNFTLTK_					0	0	0		ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL;ENST00000377503.6_1_5:159681329-159707642:-|nuORF;CCNJL|p.V393Rfs*8|1|0.23|ENSG00000135083|chr5:160253509-160253510|-/G|frameshift_variant	ENSG00000135083|ENST00000257536|CCNJL	ENSG00000135083|ENST00000257536|CCNJL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2669677734375	2	513.266739	1024.51892	1.0957	0.00056237	-0.16294	-8.3632E-05	0.93273	0.00047874	513.266519684821	26.663	0.36164	26.663	26.535	26.897	0					12	8	2	0	0	0	0.0093724	1	9222	9222		142.36	67.318	1	421610			38461	3963	26304	26395	38935	38935					0.007645622009249564
SSQNFTLTK	9	Unmodified	_SSQNFTLTK_					0	0	0		ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL;ENST00000377503.6_1_5:159681329-159707642:-|nuORF;CCNJL|p.V393Rfs*8|1|0.23|ENSG00000135083|chr5:160253509-160253510|-/G|frameshift_variant	ENSG00000135083|ENST00000257536|CCNJL	ENSG00000135083|ENST00000257536|CCNJL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2669677734375	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.513	1	26.513	26.013	27.013	0								0	0	0	0.3063	1	8547	8547		33.922	7.1255	1				38462	3963	26304	26395	38936	38936					0.007645622009249564
SSQNFTLTK	9	Unmodified	_SSQNFTLTK_					0	0	0		ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL;ENST00000377503.6_1_5:159681329-159707642:-|nuORF;CCNJL|p.V393Rfs*8|1|0.23|ENSG00000135083|chr5:160253509-160253510|-/G|frameshift_variant	ENSG00000135083|ENST00000257536|CCNJL	ENSG00000135083|ENST00000257536|CCNJL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.266357421875	2	513.266739	1024.51892	0.51883	0.0002663	-0.159	-8.1612E-05	0.35982	0.00018468	513.266418481809	26.464	0.13996	26.464	26.383	26.523	0					6	3	2	0	0	0	0.17062	1	8536	8536		65.157	24.379	1	97282			38463	3963	26304	26395	38937	38937					0.007645622009249564
SSQNFTLTK	9	Unmodified	_SSQNFTLTK_					0	0	0		ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL;ENST00000377503.6_1_5:159681329-159707642:-|nuORF;CCNJL|p.V393Rfs*8|1|0.23|ENSG00000135083|chr5:160253509-160253510|-/G|frameshift_variant	ENSG00000135083|ENST00000257536|CCNJL	ENSG00000135083|ENST00000257536|CCNJL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2672729492188	2	513.266739	1024.51892	1.4469	0.00074264	-1.9728	-0.0010125	-0.52587	-0.00026991	513.2661337873612	26.605	0.27024	26.605	26.486	26.756	0					11	5	3	0	0	0	0.0093724	1	9428	9428		142.36	57.2	1	415490			38464	3963	26304	26395	38938	38938					0.007645622009249564
SSQPLASKQEK	11	Unmodified	_SSQPLASKQEK_					0	0	0		ENSG00000137309|ENST00000311487|HMGA1;nc|ENSG00000137309|P17096-3|HMGA1;nc|ENSG00000137309|P17096-2|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	601.8223266601562	2	601.822409	1201.63027	0.14383	8.6561E-05	0.045709	2.7509E-05	0.18954	0.00011407	601.8224658731074	14.584	0.16144	14.584	14.523	14.685	0					17	6	4	0	0	0	0.0085981	1	3016	3016		126.03	31.616	1	961350			38465	4158	26305	26396	38939	38939					0.037515768382036185
SSQPLASKQEK	11	Unmodified	_SSQPLASKQEK_					0	0	0		ENSG00000137309|ENST00000311487|HMGA1;nc|ENSG00000137309|P17096-3|HMGA1;nc|ENSG00000137309|P17096-2|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.8223876953125	2	601.822409	1201.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.868	1	14.868	14.368	15.368	0								0	0	0	2.1482E-05	1	3718	3718		144.7	35.26	1				38466	4158	26305	26396	38940	38940					0.037515768382036185
SSQPLASKQEK	11	Unmodified	_SSQPLASKQEK_					0	0	0		ENSG00000137309|ENST00000311487|HMGA1;nc|ENSG00000137309|P17096-3|HMGA1;nc|ENSG00000137309|P17096-2|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	ENSG00000137309|ENST00000311487|HMGA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.822509765625	2	601.822409	1201.63027	0.2988	0.00017982	-0.12754	-7.6758E-05	0.17125	0.00010306	601.8223904725573	14.821	0.36547	14.821	14.764	15.13	0					19	7	5	0	0	0	2.2245E-05	1	3937	3937		172.21	46.502	1	6720000			38467	4158	26305	26396	38941	38941					0.037515768382036185
SSQPWSAPW	9	Unmodified	_SSQPWSAPW_					0	0	0		ENST00000485978.1_1_9:136343401-136343470:-|nuORF	ENST00000485978.1_1_9:136343401-136343470:-|nuORF	ENST00000485978.1_1_9:136343401-136343470:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8013305664062	2	523.240524	1044.46649	-0.0043587	-2.2806E-06	0.068148	3.5658E-05	0.06379	3.3377E-05	523.2405782474885	11.98	1.0868	11.98	11.756	12.843	0					74	28	5	0	0	0	0.45358	1	2837	2837		37.159	10.466	1	6898300			38468	10012	26306	26397	38942	38942					-0.05395976142017389
SSQQEPITK	9	Unmodified	_SSQQEPITK_					0	0	0		nc|ENSG00000022840|Q8N5U6-2|RNF10;ENSG00000022840|ENST00000325954|RNF10	nc|ENSG00000022840|Q8N5U6-2|RNF10	nc|ENSG00000022840|Q8N5U6-2|RNF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2640686035156	2	509.264196	1016.51384	-0.048268	-2.4581E-05	-1.3153	-0.00066986	-1.3636	-0.00069444	509.2632558987342	17.047	0.41135	17.047	16.747	17.158	0					13	8	2	0	0	0	0.43488	1	4861	4861		38.754	0.94209	1	158050			38469	1113	26307	26398	38943	38943					0.006242583383141209
SSQQLSDD	8	Unmodified	_SSQQLSDD_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.1880798339844	2	440.188154	878.361755	-0.56988	-0.00025085	0.70337	0.00030962	0.13349	5.8762E-05	440.1886825548076	25.779	0.56316	25.779	25.57	26.133	0					29	11	4	0	0	0	0.67394	1	8340	8340		37.159	0	1	566940	+		38470	14122	26308	26399	38944	38944					-0.08229142409231827
SSQQSVMSK	9	Unmodified	_SSQQSVMSK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2370300292969	2	491.237124	980.459695	0.80995	0.00039788	-0.98498	-0.00048386	-0.17503	-8.598E-05	491.23676388506124	16.711	0.20981	16.711	16.62	16.83	0					11	5	3	0	0	0	0.0093724	1	4575	4575		142.36	67.318	1	431790			38471	6411	26309	26400	38945	38945					-0.03131657084873041
SSQQSVMSK	9	Unmodified	_SSQQSVMSK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.23681640625	2	491.237124	980.459695	-1.2596	-0.00061875	1.1849	0.00058205	-0.074703	-3.6697E-05	491.23753608873955	16.401	0.074966	16.401	16.368	16.443	0					4	2	2	0	0	0	0.19891	1	3931	3931		61.765	11.74	1	124350			38472	6411	26309	26400	38946	38946					-0.03131657084873041
SSQQSVMSK	9	Unmodified	_SSQQSVMSK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2369689941406	2	491.237124	980.459695	0.58531	0.00028753	-0.80623	-0.00039605	-0.22091	-0.00010852	491.23685760474604	16.621	0.16555	16.621	16.515	16.68	0					7	3	3	0	0	0	0.0093724	1	4799	4799		142.36	61.906	1	770470			38473	6411	26309	26400	38947	38947					-0.03131657084873041
SSQQSVMSK	9	Unmodified	_SSQQSVMSK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2364196777344	2	491.237124	980.459695	-0.081084	-3.9832E-05	-1.3043	-0.00064071	-1.3854	-0.00068054	491.23658195298145	16.444	0.12396	16.444	16.403	16.527	0					5	3	2	0	0	0	0.10821	1	3909	3909		77.533	21.099	1	57707			38474	6411	26309	26400	38948	38948					-0.03131657084873041
SSQQSVMSK	9	Unmodified	_SSQQSVMSK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2369079589844	2	491.237124	980.459695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.67	1	16.67	16.17	17.17	0								0	0	0	0.017282	1	4661	4661		102.06	48.973	1				38475	6411	26309	26400	38949	38949					-0.03131657084873041
SSQRLAEIQ	9	Unmodified	_SSQRLAEIQ_					0	0	0		CCDC22|p.R448Q|1|0.08|ENSG00000101997|chrX:49248646-49248646|G/A|missense_variant	CCDC22|p.R448Q|1|0.08|ENSG00000101997|chrX:49248646-49248646|G/A|missense_variant	CCDC22|p.R448Q|1|0.08|ENSG00000101997|chrX:49248646-49248646|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.277099609375	2	516.277638	1030.54072	0.098051	5.0622E-05	-0.7834	-0.00040445	-0.68534	-0.00035383	516.2772896294459	18.554	0.24911	18.554	18.485	18.734	0					18	8	4	0	0	0	0.17854	1	4859	4859		64.207	0	1	2227300			38476	405	26310	26401	38950	38950					0.026673669495039576
SSQRRWVGVGA	11	Unmodified	_SSQRRWVGVGA_					0	0	0			REV__ENST00000467087.5_2_4:26862323-26862563:+|nuORF	REV__ENST00000467087.5_2_4:26862323-26862563:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.5508728027344	3	401.551144	1201.6316	0.16735	6.7201E-05	-1.2521	-0.00050279	-1.0848	-0.00043559	401.5507411189143	14.62	0.15063	14.62	14.558	14.709	0					12	5	3	0	0	0	0.66915	1	3134	3134		30.569	1.3988	1	133340	+		38477	19424	26311	26402	38951	38951					0.03885255717659675
SSQRYLSI	8	Unmodified	_SSQRYLSI_					0	0	0			REV__ENST00000501122.2_1_11:65197707-65198040:+|nuORF	REV__ENST00000501122.2_1_11:65197707-65198040:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2553405761719	2	477.256174	952.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.516	1	24.516	24.016	25.016	0								0	0	0	1.7419	1	7247	7247		44.117	3.5442	1		+		38478	19808	26312	26403	38952	38952					0.019645968920940504
SSQSLSFPK	9	Unmodified	_SSQSLSFPK_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.75604248046875	2	490.756007	979.497461	-0.72627	-0.00035642	0.70679	0.00034686	-0.019489	-9.5643E-06	490.75625639369747	30.257	0.37505	30.257	30.025	30.4	0					16	8	3	0	0	0	0.11411	1	11300	11300		76.17	10.367	1	256410			38479	2640	26313	26404	38953	38953					0.006891771722393969
SSQSRVLPK	9	Unmodified	_SSQSRVLPK_					0	0	0			REV__ZNF208|p.H1219Lfs*28|1|0.18|ENSG00000160321|chr19:21971378-21971379|-/AA|frameshift_variant	REV__ZNF208|p.H1219Lfs*28|1|0.18|ENSG00000160321|chr19:21971378-21971379|-/AA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.529541015625	3	334.529458	1000.56654	0.25132	8.4074E-05	-0.54022	-0.00018072	-0.2889	-9.6645E-05	334.52933071479134	15.24	0.37916	15.24	15.138	15.517	0					31	14	4	0	0	0	0.17854	1	3265	3265		64.207	7.7735	1	13662000	+		38480	22314	26314	26405	38954	38954					0.06628261191804086
SSQTTHGLY	9	Unmodified	_SSQTTHGLY_					0	0	0		PGBD5|p.E365Gfs*23|1|0.24|ENSG00000177614|chr1:230325388-230325389|-/C|frameshift_variant;nc|ENSG00000177614|Q8N414-2|PGBD5;ENSG00000177614|ENST00000391860|PGBD5	PGBD5|p.E365Gfs*23|1|0.24|ENSG00000177614|chr1:230325388-230325389|-/C|frameshift_variant	PGBD5|p.E365Gfs*23|1|0.24|ENSG00000177614|chr1:230325388-230325389|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.23516845703125	2	497.235439	992.456324	0.16797	8.3519E-05	-1.0343	-0.00051428	-0.86632	-0.00043077	497.2350966909894	26.695	0.2756	26.695	26.639	26.914	0					12	6	3	0	0	0	0.20551	1	8648	8648		60.972	9.7792	1	159370			38481	6676	26315	26406	38955	38955					-0.040205838672363825
SSQVVPQPV	9	Unmodified	_SSQVVPQPV_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.75634765625	2	470.758549	939.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.786	1	28.786	28.286	29.286	0								0	0	0	0.2591	1	10212	10212		42.396	1.618	1		+		38482	15587	26316	26407	38956	38956					0.03037481034857592
SSRANRGI	8	Unmodified	_SSRANRGI_					0	0	0		ENST00000355040.8_1_11:64001470-64001653:+|nuORF	ENST00000355040.8_1_11:64001470-64001653:+|nuORF	ENST00000355040.8_1_11:64001470-64001653:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7396545410156	2	430.738483	859.462413	2.5341	0.0010915	0.47379	0.00020408	3.0079	0.0012956	430.73866286422617	29.383	0.85654	29.383	28.925	29.781	0					46	17	4	0	0	0	0.63077	1	10696	10696		44.117	44.117	1	2839000			38483	8791	26317	26408	38957	38957					0.02705979154961824
SSRDLRKL	8	Unmodified	_SSRDLRKL_					0	0	0			REV__ENST00000525316.1_1_11:47751704-47752983:-|nuORF	REV__ENST00000525316.1_1_11:47751704-47752983:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.79083251953125	2	487.790715	973.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.248	1	47.248	46.748	47.748	0								0	0	0	1.7419	1	18880	18880		29.15	0	1		+		38484	19985	26318	26409	38958	38958					0.07903680911670108
SSRELAEL	8	Unmodified	_SSRELAEL_					0	0	0			REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.74005126953125	2	452.740357	903.46616	0.67903	0.00030742	-1.2612	-0.00057101	-0.5822	-0.00026359	452.73964778178265	18.212	0.36696	18.212	17.942	18.309	0					11	8	2	0	0	0	0.43813	1	5282	5282		66.429	4.6647	1	410260	+		38485	13875	26319	26410	38959	38959					0.010566041381480318
SSRELRAL	8	Unmodified	_SSRELRAL_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.27154541015625	2	466.269616	930.524678	2.6327	0.0012276	1.4747	0.00068762	4.1074	0.0019152	466.2703415895318	35.808	1.0615	35.808	35.552	36.613	0					54	21	4	0	0	0	0.67394	1	14087	14087		37.159	0	1	6785200	+		38486	15726	26320	26411	38960	38960					0.056637055032865646
SSREPPLP	8	Unmodified	_SSREPPLP_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.73748779296875	2	441.737617	881.460681	-0.29228	-0.00012911	-0.17818	-7.8708E-05	-0.47046	-0.00020782	441.7375189392239	20.583	1.5671	20.583	19.231	20.798	0					73	31	3	0	0	0	0.67394	1	6349	6349		37.159	2.9866	1	805490	+		38487	16734	26321	26412	38961	38961					0.015209253463240202
SSRFEGSIL	9	Unmodified	_SSRFEGSIL_					0	0	0		CUL9|p.T559I|1|0.35|ENSG00000112659|chr6:43187807-43187807|C/T|missense_variant	CUL9|p.T559I|1|0.35|ENSG00000112659|chr6:43187807-43187807|C/T|missense_variant	CUL9|p.T559I|1|0.35|ENSG00000112659|chr6:43187807-43187807|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2615051269531	2	498.261456	994.50836	-2.2331	-0.0011127	1.0237	0.00051007	-1.2094	-0.0006026	498.26265830668433	31.552	0.16911	31.552	31.463	31.632	0					7	4	2	0	0	0	0.37197	1	10886	10886		44.117	1.6423	1	88265			38488	719	26322	26413	38962	38962					0.01088579546535584
SSRGPLPVK	9	Unmodified	_SSRGPLPVK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7823791503906	2	470.782359	939.550165	0.88577	0.000417	-0.93121	-0.0004384	-0.045446	-2.1395E-05	470.7820364541772	19.586	0.15869	19.586	19.503	19.662	0					7	4	2	0	0	0	0.40353	1	5085	5085		41.427	4.2675	1	199080			38489	4774	26323	26414	38963	38963					0.07797180025715988
SSRGPLPVK	9	Unmodified	_SSRGPLPVK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7822570800781	2	470.782359	939.550165	-0.003184	-1.499E-06	0.16938	7.9741E-05	0.1662	7.8242E-05	470.78240767797826	19.608	0.18957	19.608	19.492	19.682	0					11	5	3	0	0	0	0.53064	1	5111	5111		29.17	1.0886	1	188430			38490	4774	26323	26414	38964	38964					0.07797180025715988
SSRGPLPVK	9	Unmodified	_SSRGPLPVK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.78271484375	2	470.782359	939.550165	-0.2055	-9.6746E-05	0.32644	0.00015368	0.12093	5.6934E-05	470.7825645595544	19.642	0.22125	19.642	19.548	19.77	0					11	5	3	0	0	0	0.38666	1	5401	5401		42.864	3.6114	1	303260			38491	4774	26323	26414	38965	38965					0.07797180025715988
SSRKNVFQ	8	Unmodified	_SSRKNVFQ_					0	0	0		ARHGAP15|p.E149D|1|0.14|ENSG00000075884|chr2:143250573-143250573|A/C|missense_variant;ENST00000552641.5_1_2:143913059-144194625:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15	ARHGAP15|p.E149D|1|0.14|ENSG00000075884|chr2:143250573-143250573|A/C|missense_variant	ARHGAP15|p.E149D|1|0.14|ENSG00000075884|chr2:143250573-143250573|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.51025390625	3	322.510286	964.509028	0.53524	0.00017262	-0.88689	-0.00028603	-0.35165	-0.00011341	322.5100763092979	14.908	0.1729	14.908	14.851	15.023	0					12	4	4	0	0	0	0.66372	1	3739	3739		38.806	0	1	737780			38492	200	26324	26415	38966	38966					0.02535418986235527
SSRLHTRPS	9	Unmodified	_SSRLHTRPS_					0	0	0			REV__ENST00000313349.3_1_2:64861451-64861622:-|nuORF	REV__ENST00000313349.3_1_2:64861451-64861622:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.5254821777344	3	347.524707	1039.55229	0.50062	0.00017398	1.9295	0.00067054	2.4301	0.00084452	347.52522053023733	24.73	0.22309	24.73	24.602	24.825	0					12	5	3	0	0	0	0.45358	1	8351	8351		52.937	26.244	1	454440	+		38493	18283	26325	26416	38967	38967					0.03409608763513461
SSRPELLQP	9	Unmodified	_SSRPELLQP_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	342.8572998046875	3	342.857463	1025.55056	-0.74768	-0.00025635	0.43048	0.00014759	-0.31721	-0.00010876	342.85765378921013	21.195	0.16644	21.195	21.124	21.291	0					7	5	2	0	0	0	0.45358	1	6041	6041		36.447	12.924	1	169890			38494	3196	26326	26417	38968	38968					0.03880554954912441
SSRRRLHP	8	Unmodified	_SSRRRLHP_					0	0	0		ZBTB22|p.S410Pfs*45|2|0.26|ENSG00000236104|chr6:33315690-33315690|G/-|frameshift_variant	ZBTB22|p.S410Pfs*45|2|0.26|ENSG00000236104|chr6:33315690-33315690|G/-|frameshift_variant	ZBTB22|p.S410Pfs*45|2|0.26|ENSG00000236104|chr6:33315690-33315690|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.865966796875	3	336.865175	1007.57369	1.5992	0.00053871	0.74152	0.00024979	2.3407	0.0007885	336.865480536887	28.166	0.36693	28.166	28.042	28.409	0					20	7	5	0	0	0	0.75243	1	10180	10180		37.159	8.0096	1	1075600			38495	23126	26327	26418	38969	38969					0.07021038582877281
SSRRRVAGQ	9	Unmodified	_SSRRRVAGQ_					0	0	0			REV__nc|ENSG00000067842|Q16720-6|ATP2B3	REV__nc|ENSG00000067842|Q16720-6|ATP2B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7902526855469	2	508.789038	1015.56352	2.9856	0.001519	-0.52757	-0.00026842	2.458	0.0012506	508.78872688917625	21.313	0.31608	21.313	21.206	21.522	0					8	6	2	0	0	0	0.01768	1	6910	6910		125.81	23.041	1	1042100	+		38496	20934	26328	26419	38970	38970					0.05636430857657615
SSRRRVNSL	9	Unmodified	_SSRRRVNSL_					0	0	0		nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6	nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-7|ITGA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8118286132812	2	537.809971	1073.60539	1.9993	0.0010753	1.316	0.00070774	3.3153	0.001783	537.8109160903495	31.411	0.3124	31.411	31.305	31.617	0					15	6	3	0	0	0	0.46194	1	11753	11753		15.642	0	1	647960			38497	1856	26329	26420	38971	38971					0.07152986546179818
SSRSMISII	9	Unmodified	_SSRSMISII_					0	0	0			REV__ENSG00000184811|ENST00000333813|TRARG1	REV__ENSG00000184811|ENST00000333813|TRARG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2716064453125	2	497.273509	992.532466	-0.70454	-0.00035035	-1.4256	-0.0007089	-2.1301	-0.0010592	497.2727493344343	38.501	0.29463	38.501	38.366	38.661	0					11	6	2	0	0	0	0.36892	1	15204	15204		29.15	0	1	293730	+		38498	16993	26330	26421	38972	38972					0.035900967085581215
SSRSVQPAPV	10	Unmodified	_SSRSVQPAPV_					0	0	0			REV__ENST00000572565.5_1_19:52206171-52206489:+|nuORF	REV__ENST00000572565.5_1_19:52206171-52206489:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.1890869140625	3	343.189212	1026.54581	0.20648	7.0862E-05	-0.3013	-0.0001034	-0.094815	-3.254E-05	343.1891142670032	17.877	0.16629	17.877	17.792	17.958	0					10	4	3	0	0	0	0.536	1	4339	4339		38.714	1.2059	1	1122100	+		38499	20390	26331	26422	38973	38973					0.033596708121422125
SSRWLLAMK	9	Unmodified	_SSRWLLAMK_					0	0	0			REV__nc|ENSG00000121380|Q9BZR8-3|BCL2L14	REV__nc|ENSG00000121380|Q9BZR8-3|BCL2L14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.5404052734375	3	364.539188	1090.59573	-0.11293	-4.1169E-05	2.819	0.0010276	2.7061	0.00098647	364.5405446060395	14.112	0.11489	14.112	14.056	14.171	0					4	2	2	0	0	0	0.5879	1	3451	3451		17.468	0	1	70176	+		38500	20998	26332	26423	38974	38974					0.05406082216450159
SSRWSGVLV	9	Unmodified	_SSRWSGVLV_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7738037109375	2	495.771991	989.529429	-0.062593	-3.1032E-05	2.1753	0.0010785	2.1127	0.0010474	495.77335534261897	18.234	0.11282	18.234	18.154	18.267	0					7	4	2	0	0	0	0.61124	1	4503	4503		19.36	1.0356	1	58098	+		38501	21176	26333	26424	38975	38975					0.0342458964605612
SSSAIYLEQ	9	Unmodified	_SSSAIYLEQ_					0	0	0			REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.245361328125	2	499.245472	996.476391	0.67457	0.00033677	-0.31237	-0.00015595	0.36219	0.00018082	499.2452768588183	27.775	0.27179	27.775	27.665	27.936	0					13	6	3	0	0	0	0.12834	1	9744	9744		72.879	5.3856	1	233720	+		38502	17451	26334	26425	38976	38976					-0.02198832927285821
SSSALHVHK	9	Unmodified	_SSSALHVHK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.26202392578125	2	483.261791	964.509028	-1.2776	-0.0006174	1.033	0.0004992	-0.2446	-0.00011821	483.262279162327	14.626	0.0909	14.626	14.586	14.677	0					10	4	3	0	0	0	0.022525	1	3196	3196		90.37	27.064	1	325720			38503	6429	26335	26426	38977	38977					0.025354189862468957
SSSALHVHK	9	Unmodified	_SSSALHVHK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.51043701171875	3	322.510286	964.509028	-0.66759	-0.0002153	0.61607	0.00019869	-0.051513	-1.6614E-05	322.5105777684969	14.626	0.0909	14.626	14.586	14.677	0					7	4	2	0	0	0	0.42902	1	3204	3204		39.253	0.44669	1	70403			38504	6429	26335	26426	38978	38978					0.025354189862468957
SSSALHVHK	9	Unmodified	_SSSALHVHK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2613830566406	2	483.261791	964.509028	0.67902	0.00032814	-1.4007	-0.00067693	-0.72173	-0.00034878	483.26112425583693	14.885	0.26477	14.885	14.78	15.045	0					11	5	3	0	0	0	0.014413	1	3968	3968		115.49	41.239	1	4191900			38505	6429	26335	26426	38979	38979					0.025354189862468957
SSSALHVHK	9	Unmodified	_SSSALHVHK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2620849609375	2	483.261791	964.509028	-0.2719	-0.0001314	1.0731	0.00051858	0.80118	0.00038718	483.262380276189	14.676	0.15218	14.676	14.629	14.781	0					8	5	3	0	0	0	0.076532	1	3150	3150		79.713	10.926	1	169340			38506	6429	26335	26426	38980	38980					0.025354189862468957
SSSALHVHK	9	Unmodified	_SSSALHVHK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.261474609375	2	483.261791	964.509028	0.88123	0.00042587	-1.7263	-0.00083426	-0.84508	-0.00040839	483.2610439613311	14.851	0.36767	14.851	14.745	15.113	0					10	7	2	0	0	0	0.019258	1	3798	3798		118.74	27.966	1	3501400			38507	6429	26335	26426	38981	38981					0.025354189862468957
SSSAPIVFK	9	Unmodified	_SSSAPIVFK_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.263671875	2	468.263468	934.512382	0.3503	0.00016403	0.075623	3.5411E-05	0.42592	0.00019944	468.26340807678065	30.762	0.22961	30.762	30.675	30.905	0					6	5	2	0	0	0	0.4966	1	11138	11138		32.812	2.3088	1	75848			38508	6252	26336	26427	38982	38982					0.04250669040243338
SSSASSTLK	9	Unmodified	_SSSASSTLK_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.2243957519531	2	434.224539	866.434526	-0.44896	-0.00019495	-0.26011	-0.00011295	-0.70907	-0.0003079	434.2244029522684	15.204	0.20975	15.204	15.096	15.306	0					11	4	3	0	0	0	0.032052	1	4098	4098		107.01	27.295	1	300030			38509	4235	26337	26428	38983	38983					-0.004033886158026689
SSSASSTLK	9	Unmodified	_SSSASSTLK_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.224365234375	2	434.224539	866.434526	-0.51073	-0.00022177	-0.49258	-0.00021389	-1.0033	-0.00043566	434.22439464733867	15.17	0.2179	15.17	15.063	15.28	0					7	4	2	0	0	0	0.13726	1	3931	3931		70.816	14.382	1	210890			38510	4235	26337	26428	38984	38984					-0.004033886158026689
SSSDEETL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSDEETL_					1	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.1882019042969	2	455.18782	908.361086	0.7214	0.00032837	0.012122	5.5177E-06	0.73352	0.00033389	455.1878356186187	18.047	0.82374	18.047	17.887	18.711	0					48	16	5	0	0	0	0.59411	1	5480	5480		50.025	7.5501	1	12759000			38511	11514	26338	26429	38985	38985					-0.09675981848920401
SSSDLKYLK	9	Unmodified	_SSSDLKYLK_					0	0	0		ENST00000315554.12_3_1:22379221-22404982:+|nuORF;ENST00000344548.7_3_1:22379221-22404982:+|nuORF	ENST00000315554.12_3_1:22379221-22404982:+|nuORF	ENST00000315554.12_3_1:22379221-22404982:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7855834960938	2	520.784764	1039.55498	0.70936	0.00036942	1.6918	0.00088108	2.4012	0.0012505	520.7861670546171	24.432	0.14713	24.432	24.361	24.508	0					8	4	3	0	0	0	0.12834	1	7198	7198		72.879	17.375	1	101470			38512	8581	26339	26430	38986	38986					0.036780193777985914
SSSDNFLLK	9	Unmodified	_SSSDNFLLK_					0	0	0		ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant;ENSG00000162618|ENST00000370742|ADGRL4	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	ADGRL4|p.M380Rfs*18|1|0.04|ENSG00000162618|chr1:78921731-78921732|-/TATTTATAAATGTTGCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7606506347656	2	505.761289	1009.50803	0.81574	0.00041257	-0.93152	-0.00047112	-0.11577	-5.8554E-05	505.7608791012593	35.068	0.20988	35.068	34.954	35.164	0					7	5	2	0	0	0	0.3269	1	13115	13115		47.96	3.5823	1	95331			38513	81	26340	26431	38987	38987					0.0036515982667424396
SSSEPVHAK	9	Unmodified	_SSSEPVHAK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2377624511719	2	471.237981	940.461409	-0.60546	-0.00028532	0.10405	4.9031E-05	-0.50142	-0.00023629	471.2379745454556	13.148	0.26904	13.148	13.034	13.304	0					16	7	3	0	0	0	0.012231	1	2920	2920		136.27	45.491	1	1334700			38514	6407	26341	26432	38988	38988					-0.01120280004624874
SSSEPVHAK	9	Unmodified	_SSSEPVHAK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.23779296875	2	471.237981	940.461409	-0.82453	-0.00038855	0.23791	0.00011211	-0.58661	-0.00027643	471.23809875051666	13.137	0.19797	13.137	13.084	13.282	0					6	4	2	0	0	0	0.021961	1	3140	3140		118.74	54.536	1	342440			38515	6407	26341	26432	38989	38989					-0.01120280004624874
SSSEPVHAK	9	Unmodified	_SSSEPVHAK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2381286621094	2	471.237981	940.461409	-2.3443	-0.0011047	1.6971	0.00079973	-0.64718	-0.00030498	471.2387236076068	12.878	0.075996	12.878	12.823	12.899	0					6	4	2	0	0	0	0.25716	1	2536	2536		54.776	1.4249	1	41005			38516	6407	26341	26432	38990	38990					-0.01120280004624874
SSSEPVHAKK	10	Unmodified	_SSSEPVHAKK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2857666015625	2	535.285463	1068.55637	0.17645	9.4453E-05	0.64917	0.00034749	0.82563	0.00044195	535.2858654492417	12.147	0.35366	12.147	11.999	12.353	0					19	12	3	0	0	0	0.078327	1	2471	2471		88.177	45.781	1	824860			38517	6407	26342	26433	38991	38991					0.02483653466561009
SSSEPVHAKK	10	Unmodified	_SSSEPVHAKK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2864990234375	2	535.285463	1068.55637	-0.60094	-0.00032168	2.1326	0.0011415	1.5316	0.00081985	535.2866842579431	11.891	0.11926	11.891	11.831	11.95	0					14	7	3	0	0	0	0.023179	1	2316	2316		124.08	44.629	1	300670			38518	6407	26342	26433	38992	38992					0.02483653466561009
SSSEPVHAKK	10	Unmodified	_SSSEPVHAKK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2863159179688	2	535.285463	1068.55637	1.8056	0.00096652	-1.2228	-0.00065456	0.58279	0.00031196	535.284746940917	12.184	0.5029	12.184	12.018	12.521	0					28	12	3	0	0	0	0.0094828	1	2651	2651		123.21	57.743	1	6360100			38519	6407	26342	26433	38993	38993					0.02483653466561009
SSSEPVHAKK	10	Unmodified	_SSSEPVHAKK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2864379882812	2	535.285463	1068.55637	1.0845	0.0005805	1.3066	0.0006994	2.3911	0.0012799	535.286237012133	11.854	0.10151	11.854	11.784	11.885	0					8	6	2	0	0	0	0.026898	1	2272	2272		98.629	65.817	1	32739			38520	6407	26342	26433	38994	38994					0.02483653466561009
SSSEPVHAKK	10	Unmodified	_SSSEPVHAKK_					0	0	0		NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.285400390625	2	535.285463	1068.55637	1.8793	0.001006	-0.90125	-0.00048242	0.97804	0.00052353	535.2849159357286	12.097	0.18093	12.097	11.967	12.148	0					11	4	3	0	0	0	0.026945	1	2483	2483		109.48	46.172	1	1544900			38521	6407	26342	26433	38995	38995					0.02483653466561009
SSSEYTHHK	9	Unmodified	_SSSEYTHHK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.244140625	2	538.243795	1074.47304	1.9071	0.0010265	-1.1479	-0.00061784	0.75921	0.00040864	538.2431544998414	12.059	0.16663	12.059	11.984	12.151	0					8	4	3	0	0	0	0.012915	1	2618	2618		134.81	55.36	1	573180			38522	5064	26343	26434	38996	38996					-0.06122082981278254
SSSFIPQLV	9	Unmodified	_SSSFIPQLV_					0	0	0		CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	326.51361083984375	3	326.514925	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.822	1	12.822	12.322	13.322	0								0	0	0	0.2591	1	2514	2514		42.396	8.2236	1				38523	485	26344	26435	38997	38997					0.03374651694662134
SSSFLVLMVS	10	Unmodified	_SSSFLVLMVS_					0	0	0		WFDC12|p.E58Kfs*14|1|0.4|ENSG00000168703|chr20:45124173-45124173|C/-|frameshift_variant;ENSG00000168703|ENST00000372785|WFDC12	WFDC12|p.E58Kfs*14|1|0.4|ENSG00000168703|chr20:45124173-45124173|C/-|frameshift_variant	WFDC12|p.E58Kfs*14|1|0.4|ENSG00000168703|chr20:45124173-45124173|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.1925964355469	3	357.191454	1068.55253	3.0741	0.001098	0.30187	0.00010782	3.3759	0.0012059	357.1915547736023	12.086	0.29583	12.086	12	12.296	0					14	8	3	0	0	0	0.59277	1	2479	2479		35.152	0	1	1751000			38524	6113	26345	26436	38998	38998					0.020998476484919593
SSSFPYTTK	9	Unmodified	_SSSFPYTTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2469482421875	2	509.248015	1016.48148	-0.042446	-2.1615E-05	-2.7625	-0.0014068	-2.805	-0.0014284	509.2461965197448	27.979	1.2224	27.979	27.255	28.478	0					57	24	4	0	0	0	0.28897	1	9989	9989		51.193	4.7359	1	588310			38525	3082	26346	26437	38999	38999					-0.026105290646796675
SSSFVRNAI	9	Unmodified	_SSSFVRNAI_					0	0	0			REV__nc|ENSG00000152620|Q4G0N4-3|NADK2	REV__nc|ENSG00000152620|Q4G0N4-3|NADK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7611083984375	2	490.761623	979.508694	-0.053309	-2.6162E-05	-0.91179	-0.00044747	-0.9651	-0.00047363	490.76111262051586	27.58	0.15017	27.58	27.492	27.642	0					7	5	2	0	0	0	0.48389	1	8522	8522		34.173	2.6427	1	61920	+		38526	15514	26347	26438	39000	39000					0.01811999266362818
SSSFVTIEQ	9	Unmodified	_SSSFVTIEQ_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2452697753906	2	499.245472	996.476391	-0.014264	-7.1213E-06	-0.024532	-1.2248E-05	-0.038796	-1.9369E-05	499.24543399546775	27.773	0.21516	27.773	27.665	27.88	0					8	4	3	0	0	0	0.13726	1	10111	10111		70.816	12.57	1	165430	+		38527	14152	26348	26439	39001	39001					-0.02198832927285821
SSSFVTIEQ	9	Unmodified	_SSSFVTIEQ_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.24554443359375	2	499.245472	996.476391	-0.73536	-0.00036713	0.43613	0.00021774	-0.29923	-0.00014939	499.2459016096963	27.721	0.21848	27.721	27.611	27.829	0					6	4	2	0	0	0	0.35021	1	9965	9965		45.972	1.5951	1	186880	+		38528	14152	26348	26439	39002	39002					-0.02198832927285821
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.2474365234375	2	448.247818	894.481082	0.09148	4.1006E-05	-0.34078	-0.00015275	-0.2493	-0.00011175	448.24767247719444	28.637	0.2962	28.637	28.536	28.832	0					34	12	4	0	0	0	0.011031	1	8942	8942		138.83	59.374	1	815200			38529	7564	26349	26440	39003	39003					0.02962096006149295
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.24749755859375	2	448.247818	894.481082	0.61706	0.00027659	-0.96755	-0.0004337	-0.3505	-0.00015711	448.2473721576487	28.932	0.48942	28.932	28.807	29.296	0					31	12	4	0	0	0	0.0040894	1	10270	10270		162.25	66.062	1	6765000			38530	7564	26349	26440	39004	39004					0.02962096006149295
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2482604980469	2	448.247818	894.481082	-1.1771	-0.00052762	1.5088	0.00067634	0.33178	0.00014872	448.2489014994775	28.67	0.25836	28.67	28.598	28.857	0					20	10	3	0	0	0	0.12239	1	9252	9252		74.255	10.949	1	200420			38531	7564	26349	26440	39005	39005					0.02962096006149295
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2476501464844	2	448.247818	894.481082	0.63319	0.00028383	0.017357	7.78E-06	0.65055	0.00029161	448.2475644060266	28.919	0.30441	28.919	28.812	29.116	0					12	6	3	0	0	0	0.035062	1	10661	10661		104.06	27.283	1	1179600			38532	7564	26349	26440	39006	39006					0.02962096006149295
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2479553222656	2	448.247818	894.481082	0.52821	0.00023677	-0.48318	-0.00021658	0.045032	2.0185E-05	448.24756542228266	28.727	0.29701	28.727	28.613	28.91	0					19	7	4	0	0	0	0.0017279	1	9549	9549		176.09	65.967	1	568650			38533	7564	26349	26440	39007	39007					0.02962096006149295
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.2478332519531	2	448.247818	894.481082	-0.32528	-0.0001458	0.099188	4.4461E-05	-0.22609	-0.00010134	448.24788789076445	28.714	0.29369	28.714	28.599	28.893	0					17	7	3	0	0	0	0.17854	1	9545	9545		64.207	10.856	1	815100			38534	7564	26349	26440	39008	39008					0.02962096006149295
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2475891113281	2	448.247818	894.481082	-0.40876	-0.00018323	0.1766	7.916E-05	-0.23217	-0.00010407	448.2478475819533	28.868	0.46525	28.868	28.758	29.224	0					23	9	4	0	0	0	0.0017279	1	10518	10518		176.09	79.896	1	6845800			38535	7564	26349	26440	39009	39009					0.02962096006149295
SSSGFVAIK	9	Unmodified	_SSSGFVAIK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2478942871094	2	448.247818	894.481082	0.85967	0.00038534	-0.3977	-0.00017827	0.46197	0.00020708	448.247628007062	28.853	0.41728	28.853	28.741	29.159	0					23	8	4	0	0	0	0.0017279	1	10510	10510		176.09	79.896	1	4887900			38536	7564	26349	26440	39010	39010					0.02962096006149295
SSSGFVAIKK	10	Unmodified	_SSSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2957763671875	2	512.295299	1022.57605	-0.10553	-5.4062E-05	0.060655	3.1073E-05	-0.044874	-2.2989E-05	512.2954644057638	22.094	0.11503	22.094	22.012	22.127	0					8	3	3	0	0	0	0.06456	1	6183	6183		72.879	18.103	1	411730			38537	7564	26350	26441	39011	39011					0.06566029477335178
SSSGFVAIKK	10	Unmodified	_SSSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2954711914062	2	512.295299	1022.57605	0.0049533	2.5376E-06	0.33767	0.00017299	0.34263	0.00017553	512.2955083778658	22.423	0.36622	22.423	22.237	22.604	0					13	8	2	0	0	0	0.0088982	1	7291	7291		138.06	47.693	1	2363300			38538	7564	26350	26441	39012	39012					0.06566029477335178
SSSGFVAIKK	10	Unmodified	_SSSGFVAIKK_					0	0	0		SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant;ENSG00000198478|ENST00000369838|SH3BGRL2	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.295166015625	2	512.295299	1022.57605	-1.7079	-0.00087494	1.6932	0.00086742	-0.014679	-7.5198E-06	512.2962082222449	22.178	0.22718	22.178	22.063	22.29	0					10	5	3	0	0	0	0.06456	1	6556	6556		93.143	38.367	1	253970			38539	7564	26350	26441	39013	39013					0.06566029477335178
SSSGHMHAL	9	Unmodified	_SSSGHMHAL_					0	0	0		ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;OBSL1-MRPL2|1|fusion	ENST00000465149.1_1_2:220420747-220435459:-|nuORF;OBSL1-MRPL2|1|fusion	OBSL1-MRPL2|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7114562988281	2	463.711076	925.4076	-1.0244	-0.00047503	2.0403	0.00094611	1.0159	0.00047108	463.71191443329167	26.076	0.31191	26.076	25.951	26.263	0					9	6	2	0	0	0	0.49003	1	9317	9317		33.516	1.5607	1	112060			38540	11869;3341	26351	26442	39014	39014					-0.05808775707987479
SSSGSTAIKK	10	Unmodified	_SSSGSTAIKK_					0	0	0		ENSG00000131171|ENST00000373212|SH3BGRL;SH3BGRL|p.K19T|1|0.55|ENSG00000131171|chrX:81276994-81276994|A/C|missense_variant	ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.26654052734375	2	483.266739	964.518924	-0.15188	-7.3398E-05	-0.38154	-0.00018439	-0.53342	-0.00025778	483.2665555070677	12.755	0.3646	12.755	12.681	13.046	0					21	10	4	0	0	0	0.022799	1	2741	2741		123.21	30.065	1	5285000			38541	3705	26352	26443	39015	39015					0.03524562200948367
SSSGSTAIKK	10	Unmodified	_SSSGSTAIKK_					0	0	0		ENSG00000131171|ENST00000373212|SH3BGRL;SH3BGRL|p.K19T|1|0.55|ENSG00000131171|chrX:81276994-81276994|A/C|missense_variant	ENSG00000131171|ENST00000373212|SH3BGRL	ENSG00000131171|ENST00000373212|SH3BGRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2668762207031	2	483.266739	964.518924	-2.9192	-0.0014108	2.3952	0.0011575	-0.52402	-0.00025324	483.2679300351162	12.464	0.073854	12.464	12.426	12.5	0					8	4	2	0	0	0	0.27065	1	2413	2413		70.816	21.375	1	146990			38542	3705	26352	26443	39016	39016					0.03524562200948367
SSSGTRSILG	10	Unmodified	_SSSGTRSILG_					0	0	0			REV__USP36|p.K688Nfs*35|1|0.21|ENSG00000055483|chr17:78806980-78806980|T/-|frameshift_variant	REV__USP36|p.K688Nfs*35|1|0.21|ENSG00000055483|chr17:78806980-78806980|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7577209472656	2	482.756538	963.498523	0.044155	2.1316E-05	2.8594	0.0013804	2.9036	0.0014017	482.75798711762155	27.771	0.25771	27.771	27.683	27.94	0					17	8	3	0	0	0	0.56931	1	8591	8591		37.812	0.65241	1	125400	+		38543	13055	26353	26444	39017	39017					0.015313915411525159
SSSGTVLSK	9	Unmodified	_SSSGTVLSK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2346496582031	2	433.234907	864.455261	0.72101	0.00031236	-1.2045	-0.00052183	-0.48348	-0.00020946	433.23438155620323	21.872	0.15254	21.872	21.779	21.932	0					7	3	3	0	0	0	0.056004	1	7031	7031		93.143	0	1	675390			38544	4668	26354	26445	39018	39018					0.017612017638612087
SSSGTVLSK	9	Unmodified	_SSSGTVLSK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.2346496582031	2	433.234907	864.455261	-0.46416	-0.00020109	-0.13634	-5.9069E-05	-0.60051	-0.00026016	433.2348431600075	21.784	0.21563	21.784	21.675	21.89	0					6	4	2	0	0	0	0.0406	1	7287	7287		98.629	0	1	468110			38545	4668	26354	26445	39019	39019					0.017612017638612087
SSSGTVLSK	9	Unmodified	_SSSGTVLSK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.23443603515625	2	433.234907	864.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.671	1	21.671	21.171	22.171	0								0	0	0	0.28666	1	6323	6323		37.812	0	1				38546	4668	26354	26445	39020	39020					0.017612017638612087
SSSGTVLSK	9	Unmodified	_SSSGTVLSK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.2354736328125	2	433.234907	864.455261	-0.48817	-0.00021149	0.93158	0.00040359	0.44341	0.0001921	433.23533972435575	21.677	0.11296	21.677	21.572	21.685	0					5	3	2	0	0	0	0.10915	1	6316	6316		77.318	0	1	58897			38547	4668	26354	26445	39021	39021					0.017612017638612087
SSSGTVLSK	9	Unmodified	_SSSGTVLSK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.234619140625	2	433.234907	864.455261	-0.49665	-0.00021517	-0.097597	-4.2282E-05	-0.59425	-0.00025745	433.2349382612804	21.798	0.21553	21.798	21.687	21.903	0					10	4	3	0	0	0	0.078509	1	7165	7165		85.161	0	1	619180			38548	4668	26354	26445	39022	39022					0.017612017638612087
SSSGTVLSK	9	Unmodified	_SSSGTVLSK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.234619140625	2	433.234907	864.455261	0.87289	0.00037817	-1.2023	-0.00052089	-0.32944	-0.00014273	433.234319887647	21.77	0.26887	21.77	21.571	21.84	0					9	5	3	0	0	0	0.19605	1	7155	7155		62.107	0	1	722060			38549	4668	26354	26445	39023	39023					0.017612017638612087
SSSHHGHVLG	10	Unmodified	_SSSHHGHVLG_					0	0	0		ENST00000555357.1_1_12:56361683-56362031:+|nuORF	ENST00000555357.1_1_12:56361683-56362031:+|nuORF	ENST00000555357.1_1_12:56361683-56362031:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2475280761719	2	509.246672	1016.47879	0.99016	0.00050424	1.7723	0.00090252	2.7624	0.0014068	509.24743448690083	27.686	0.62811	27.686	27.468	28.096	0					39	21	3	0	0	0	0.56015	1	8510	8510		38.806	2.3594	1	161390			38550	10657	26355	26446	39024	39024					-0.028789396789420607
SSSKEGRTQ	9	Unmodified	_SSSKEGRTQ_					0	0	0		nc|ENSG00000111653|Q9UNL4-5|ING4	nc|ENSG00000111653|Q9UNL4-5|ING4	nc|ENSG00000111653|Q9UNL4-5|ING4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.77203369140625	2	490.243795	978.473037	-0.72227	-0.00035409	-0.79055	-0.00038756	-1.5128	-0.00074165	490.24339039220126	12.422	0.51144	12.422	12.331	12.843	0					23	12	2	0	0	0	0.36892	1	2820	2820		44.377	1.981	1	1500900			38551	11483	26356	26447	39025	39025					-0.01706082981286272
SSSKGKVG	8	Unmodified	_SSSKGKVG_					0	0	0		ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.21185302734375	2	375.211235	748.407917	3.2406	0.0012159	-1.2513	-0.00046951	1.9893	0.00074641	375.2107365177532	45.26	0.15683	45.26	45.17	45.327	0					12	7	2	0	0	0	0.78037	1	18131	18131		7.6903	0	1	78432			38552	8977	26357	26448	39026	39026					0.023649672835176716
SSSKLSMSK	9	Unmodified	_SSSKLSMSK_					0	0	0		ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7492370605469	2	477.749867	953.485181	0.5438	0.0002598	-0.38814	-0.00018543	0.15566	7.4366E-05	477.749678502185	16.464	0.10525	16.464	16.375	16.481	0					4	2	2	0	0	0	0.037924	1	4461	4461		101.25	31.625	1	106810			38553	1986	26358	26449	39027	39027					0.0065781743754769195
SSSKSSTP	8	Unmodified	_SSSKSSTP_					0	0	0			REV__EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	REV__EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.6903381347656	2	390.690333	779.366112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.338	1	15.338	14.838	15.838	0								0	0	0	1.7419	1	4173	4173		17.365	0	1		+		38554	12781	26359	26450	39028	39028					-0.032396331956533686
SSSLALEDY	9	Unmodified	_SSSLALEDY_					0	0	0		nc|nan|Q8ND61-2|C3orf20;ENSG00000131379|ENST00000253697|C3orf20	nc|nan|Q8ND61-2|C3orf20	nc|nan|Q8ND61-2|C3orf20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7317810058594	2	492.729655	983.444756	2.7469	0.0013535	1.4724	0.00072551	4.2193	0.002079	492.7304895166838	28.632	0.36599	28.632	28.426	28.792	0					21	7	5	0	0	0	0.05357	1	10406	10406		94.006	9.0909	1	4483700			38555	3716	26360	26451	39029	39029					-0.04762825681245886
SSSLPPAKPS	10	Unmodified	_SSSLPPAKPS_					0	0	0			REV__ENSG00000105732|ENST00000359044|ZNF574	REV__ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7635192871094	2	485.763832	969.513111	0.67221	0.00032653	-0.5657	-0.0002748	0.10651	5.1736E-05	485.76339327513114	21.132	0.34987	21.132	20.931	21.281	0					20	8	3	0	0	0	0.43008	1	6664	6664		52.937	1.6012	1	619380	+		38556	13796	26361	26452	39030	39030					0.027134636892810704
SSSLPVSAEK	10	Unmodified	_SSSLPVSAEK_					0	0	0		nc|ENSG00000089177|Q96L93-2|KIF16B;KIF16B|p.F1272Sfs*3|1|0.36|ENSG00000089177|chr20:16273392-16273392|A/-|frameshift_variant;nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B	nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-2|KIF16B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7668151855469	2	502.766571	1003.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.272	1	23.272	22.772	23.772	0								0	0	0	0.10801	1	7868	7868		78.264	3.2205	1				38557	11446;1806	26362	26453	39031	39031					0.016971424811004
SSSLQFLLA	9	Unmodified	_SSSLQFLLA_					0	0	0			REV__ENST00000521286.1_1_8:86131505-86132537:-|nuORF	REV__ENST00000521286.1_1_8:86131505-86132537:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.5138854980469	3	322.514925	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.76	1	12.76	12.26	13.26	0								0	0	0	0.29774	1	2950	2950		35.618	1.4457	1		+		38558	19956	26363	26454	39032	39032					0.03926651694666816
SSSLQFLLA	9	Unmodified	_SSSLQFLLA_					0	0	0			REV__ENST00000521286.1_1_8:86131505-86132537:-|nuORF	REV__ENST00000521286.1_1_8:86131505-86132537:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.5136413574219	3	322.514925	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.761	1	12.761	12.261	13.261	0								0	0	0	0.3368	1	2797	2797		27.882	0	1		+		38559	19956	26363	26454	39033	39033					0.03926651694666816
SSSLRVLVY	9	Unmodified	_SSSLRVLVY_					0	0	0		ENST00000433355.6_1_6:146231577-146267398:-|nuORF;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant;nc|ENSG00000146414|Q149N8-2|SHPRH	ENST00000433355.6_1_6:146231577-146267398:-|nuORF	ENST00000433355.6_1_6:146231577-146267398:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.8658142089844	3	341.865958	1022.57605	0.67494	0.00023074	-0.91159	-0.00031164	-0.23664	-8.09E-05	341.86562922176284	22.438	0.19169	22.438	22.34	22.531	0					7	4	2	0	0	0	0.48389	1	7303	7303		34.173	0.25091	1	570610			38560	4731	26364	26455	39034	39034					0.06566029477335178
SSSLSIIRIGT	11	Unmodified	_SSSLSIIRIGT_					0	0	0			REV__nc|ENSG00000106078|O75128-6|COBL	REV__nc|ENSG00000106078|O75128-6|COBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.330078125	2	567.32987	1132.64519	1.862	0.0010564	-0.76081	-0.00043163	1.1012	0.00062476	567.3293328569408	52.236	0.88717	52.236	51.872	52.759	0					120	54	3	0	0	0	0.78029	1	19232	19232		19.263	0.15916	1	270020	+		38561	12541	26365	26456	39035	39035					0.08417068706239661
SSSMNPTETK	10	Unmodified	_SSSMNPTETK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2443237304688	2	541.245146	1080.47574	1.0367	0.00056113	-0.80674	-0.00043665	0.22999	0.00012448	541.2447698150219	18.054	0.29211	18.054	17.868	18.161	0					12	8	2	0	0	0	0.39647	1	4433	4433		56.632	7.0962	1	88151			38562	5038	26366	26457	39036	39036					-0.06127995638644279
SSSPAIATVSP	11	Unmodified	_SSSPAIATVSP_					0	0	0			REV__POM121|p.T753I|1|0.23|ENSG00000196313|chr7:72942251-72942251|C/T|missense_variant	REV__POM121|p.T753I|1|0.23|ENSG00000196313|chr7:72942251-72942251|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.76678466796875	2	508.766571	1015.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.731	1	18.731	18.231	19.231	0								0	0	0	0.44646	1	4946	4946		26.693	1.1189	1		+		38563	21398	26367	26458	39037	39037					0.011451424811070865
SSSPAQPRAL	10	Unmodified	_SSSPAQPRAL_					0	0	0			REV__ENSG00000165804|ENST00000360947|ZNF219	REV__ENSG00000165804|ENST00000360947|ZNF219	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.27215576171875	2	507.272355	1012.53016	-0.033439	-1.6963E-05	-0.18859	-9.5665E-05	-0.22203	-0.00011263	507.2720059785329	28.674	0.44976	28.674	28.396	28.846	0					24	11	3	0	0	0	0.52275	1	10131	10131		42.864	5.0528	1	558700	+		38564	16071	26368	26459	39038	39038					0.024393842950985345
SSSPFVLIQ	9	Unmodified	_SSSPFVLIQ_					0	0	0			REV__ENSG00000236104|ENST00000431845|ZBTB22	REV__ENSG00000236104|ENST00000431845|ZBTB22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2651672363281	2	489.26875	976.522947	-2.86	-0.0013993	-1.1117	-0.0005439	-3.9717	-0.0019432	489.2681313161586	12.807	0.10096	12.807	12.744	12.845	0					14	5	3	0	0	0	0.18416	1	2502	2502		47.657	8.4045	1	722270	+		38565	17661	26369	26460	39039	39039					0.03374651694673503
SSSPGTSVKK	10	Unmodified	_SSSPGTSVKK_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.26605224609375	2	489.266739	976.518924	-0.032474	-1.5888E-05	-0.40252	-0.00019694	-0.43499	-0.00021283	489.2665831866442	12.846	0.20135	12.846	12.764	12.965	0					17	10	3	0	0	0	0.41384	1	2460	2460		54.722	7.065	1	464270			38566	4015	26370	26461	39040	39040					0.02972562200966422
SSSPGTSVKK	10	Unmodified	_SSSPGTSVKK_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2665710449219	2	489.266739	976.518924	-0.43184	-0.00021128	0.34465	0.00016863	-0.087188	-4.2658E-05	489.26705250230765	13.075	0.46165	13.075	12.994	13.456	0					33	12	5	0	0	0	0.018513	1	2883	2883		126.24	24.642	1	16864000			38567	4015	26370	26461	39041	39041					0.02972562200966422
SSSPGTSVKK	10	Unmodified	_SSSPGTSVKK_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.26617431640625	2	489.266739	976.518924	-1.1553	-0.00056527	0.40315	0.00019725	-0.7522	-0.00036803	489.26680616101015	12.841	0.14228	12.841	12.778	12.92	0					11	8	2	0	0	0	0.48965	1	2570	2570		46.457	5.6786	1	173510			38568	4015	26370	26461	39042	39042					0.02972562200966422
SSSPGTSVKK	10	Unmodified	_SSSPGTSVKK_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2666320800781	2	489.266739	976.518924	-0.71559	-0.00035012	0.33958	0.00016614	-0.37601	-0.00018397	489.2668847019756	13.093	0.28168	13.093	13.001	13.282	0					12	6	3	0	0	0	0.0084313	1	3093	3093		150.36	40.242	1	2094800			38569	4015	26370	26461	39043	39043					0.02972562200966422
SSSPGTSVKK	10	Unmodified	_SSSPGTSVKK_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2665100097656	2	489.266739	976.518924	2.6239	0.0012838	-2.9058	-0.0014217	-0.28192	-0.00013793	489.265395613302	13.043	0.65819	13.043	12.947	13.605	0					35	14	6	0	0	0	0.03454	1	2916	2916		114.89	6.8071	1	15227000			38570	4015	26370	26461	39044	39044					0.02972562200966422
SSSPLERKLT	10	Unmodified	_SSSPLERKLT_					0	0	0			REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant	REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.20977783203125	3	373.211906	1116.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.223	1	27.223	26.723	27.723	0								0	0	0	0.39244	1	8877	8877		24.232	3.3947	1		+		38571	21378	26371	26462	39045	39045					0.06024495672136254
SSSPPILTK	9	Unmodified	_SSSPPILTK_					0	0	0		KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.26861572265625	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.191	1	25.191	24.691	25.691	0								0	0	0	0.040385	1	8576	8576		90.601	13.827	1				38572	1690	26372	26463	39046	39046					0.05582651694658125
SSSPPILTK	9	Unmodified	_SSSPPILTK_					0	0	0		KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2686767578125	2	465.26875	928.522947	-0.13805	-6.4229E-05	-0.50651	-0.00023566	-0.64456	-0.00029989	465.26867049328587	25.065	0.26559	25.065	24.957	25.222	0					13	5	3	0	0	0	0.076532	1	8860	8860		85.862	25.744	1	474150			38573	1690	26372	26463	39047	39047					0.05582651694658125
SSSPPTSAPK	10	Unmodified	_SSSPPTSAPK_					0	0	0		AluJo_dup65935|chr17:47951181-47951484:-|3.1232314964255035|0.4639684686261284|2.75|483.0|20|2|anti-sense	AluJo_dup65935|chr17:47951181-47951484:-|3.1232314964255035|0.4639684686261284|2.75|483.0|20|2|anti-sense	AluJo_dup65935|chr17:47951181-47951484:-|3.1232314964255035|0.4639684686261284|2.75|483.0|20|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.74884033203125	2	479.745639	957.476725	3.4587	0.0016593	1.2913	0.00061949	4.75	0.0022788	479.7463134452696	16.023	0.3847	16.023	15.762	16.147	0					17	14	2	0	0	0	0.52275	1	3734	3734		42.864	8.6917	1	128710			38574	124	26373	26464	39048	39048					-0.003714132074264853
SSSPRGRPQ	9	Unmodified	_SSSPRGRPQ_					0	0	0			REV__SHANK1|p.T693Pfs*33|2|0.23|ENSG00000161681|chr19:50688940-50688940|G/-|frameshift_variant	REV__SHANK1|p.T693Pfs*33|2|0.23|ENSG00000161681|chr19:50688940-50688940|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2555236816406	2	486.254497	970.494441	0.82814	0.00040269	0.99889	0.00048571	1.827	0.0008884	486.25504416476997	25.448	0.70196	25.448	25.298	26	0					27	12	3	0	0	0	0.25716	1	8905	8905		54.776	0.01164	1	1957300	+		38575	15786	26374	26465	39049	39049					0.008013468380909217
SSSPRSINK	9	Unmodified	_SSSPRSINK_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2641906738281	2	488.26453	974.514508	0.75016	0.00036628	-1.3385	-0.00065352	-0.58829	-0.00028724	488.2639179081663	14.147	0.21959	14.147	13.976	14.196	0					9	5	3	0	0	0	0.063171	1	3375	3375		90.601	2.8466	1	481510			38576	6883	26375	26466	39050	39050					0.026230977780414833
SSSPRSINK	9	Unmodified	_SSSPRSINK_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2638854980469	2	488.26453	974.514508	-0.079562	-3.8847E-05	-0.80242	-0.00039179	-0.88198	-0.00043064	488.26405449553863	14.05	0.21001	14.05	13.991	14.201	0					6	4	2	0	0	0	0.04067	1	3571	3571		98.582	7.9811	1	180680			38577	6883	26375	26466	39051	39051					0.026230977780414833
SSSPVNVKK	9	Unmodified	_SSSPVNVKK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2715759277344	2	473.271824	944.529095	-0.53736	-0.00025432	-0.17629	-8.3433E-05	-0.71365	-0.00033775	473.27200121010446	15.962	0.17925	15.962	15.841	16.021	0					6	4	2	0	0	0	0.30951	1	4227	4227		49.442	8.8689	1	130180			38578	5043	26376	26467	39052	39052					0.05461169926184084
SSSPVNVKK	9	Unmodified	_SSSPVNVKK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2720947265625	2	473.271824	944.529095	-1.5435	-0.00073048	2.685	0.0012707	1.1416	0.00054026	473.27272896150583	15.691	0.31144	15.691	15.581	15.893	0					19	12	3	0	0	0	0.21263	1	3611	3611		60.118	1.8883	1	258840			38579	5043	26376	26467	39053	39053					0.05461169926184084
SSSPVNVKK	9	Unmodified	_SSSPVNVKK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.27154541015625	2	473.271824	944.529095	2.4027	0.0011371	-2.0622	-0.00097598	0.34048	0.00016114	473.27042591768014	15.893	0.56753	15.893	15.513	16.08	0					19	11	3	0	0	0	0.056004	1	4291	4291		93.143	23.516	1	1482700			38580	5043	26376	26467	39054	39054					0.05461169926184084
SSSPVNVKK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSPVNVKK_					1	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2767333984375	2	494.277106	986.53966	-0.45094	-0.00022289	0.97825	0.00048353	0.52732	0.00026064	494.27771037012513	20.233	0.55958	20.233	20.095	20.655	0					35	12	4	0	0	0	0.0080613	1	6228	6228		145.16	40.409	1	37870000			38581	5043	26376	26468	39055	39055					0.04585152580614249
SSSPVNVKK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSPVNVKK_					1	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.27691650390625	2	494.277106	986.53966	-1.6065	-0.00079404	1.3576	0.00067103	-0.24888	-0.00012302	494.2777315456028	19.939	0.32401	19.939	19.829	20.153	0					27	10	5	0	0	0	0.016683	1	5477	5477		127.46	39.707	1	4419700			38582	5043	26376	26468	39056	39056					0.04585152580614249
SSSPVNVKK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSPVNVKK_					1	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2771911621094	2	494.277106	986.53966	-0.75316	-0.00037227	0.41734	0.00020628	-0.33582	-0.00016599	494.2773143831143	20.153	0.51767	20.153	19.995	20.512	0					30	10	5	0	0	0	0.01873	1	6454	6454		124.08	47.306	1	16381000			38583	5043	26376	26468	39057	39057					0.04585152580614249
SSSQPIGVTK	10	Unmodified	_SSSQPIGVTK_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2745361328125	2	502.274564	1002.53457	0.70872	0.00035597	-0.62343	-0.00031313	0.085293	4.284E-05	502.2741189358173	20.439	0.47257	20.439	20.241	20.714	0					18	10	3	0	0	0	0.031797	1	6333	6333		105.17	0	1	788210			38584	8097	26377	26469	39058	39058					0.03340848718005418
SSSQPIGVTK	10	Unmodified	_SSSQPIGVTK_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.27447509765625	2	502.274564	1002.53457	-0.52386	-0.00026312	0.47218	0.00023716	-0.05168	-2.5957E-05	502.274743156891	20.302	0.46776	20.302	20.044	20.511	0					14	9	3	0	0	0	0.06561	1	6440	6440		92.239	34.009	1	695790			38585	8097	26377	26469	39059	39059					0.03340848718005418
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.779541015625	2	466.779816	931.545079	0.053933	2.5175E-05	-0.56283	-0.00026272	-0.50889	-0.00023754	466.7795371305702	15.579	0.2525	15.579	15.49	15.742	0					28	10	4	0	0	0	0.085655	1	3410	3410		82.75	0.50997	1	3393800		+	38586	11643	26378	26470	39060	39060					0.07656876163093784
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7794494628906	2	466.779816	931.545079	0.40289	0.00018806	-0.85723	-0.00040014	-0.45434	-0.00021208	466.77948960107466	15.9	0.97772	15.9	15.697	16.674	0					56	23	5	0	0	0	0.076532	1	4194	4194		85.862	16.234	1	34356000		+	38587	11643	26378	26470	39061	39061					0.07656876163093784
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.77960205078125	2	466.779816	931.545079	-0.13334	-6.2239E-05	-0.1374	-6.4136E-05	-0.27074	-0.00012638	466.7797223380341	15.887	0.71014	15.887	15.686	16.396	0					28	14	5	0	0	0	0.037924	1	4420	4420		101.25	20.798	1	12315000		+	38588	11643	26378	26470	39062	39062					0.07656876163093784
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.77947998046875	2	466.779816	931.545079	-0.18676	-8.7175E-05	-0.3478	-0.00016235	-0.53456	-0.00024952	466.77962924905205	15.635	0.1863	15.635	15.58	15.766	0					23	7	5	0	0	0	0.056004	1	3541	3541		93.143	18.888	1	4513800		+	38589	11643	26378	26470	39063	39063					0.07656876163093784
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7799987792969	2	466.779816	931.545079	-0.6708	-0.00031312	0.16638	7.7662E-05	-0.50442	-0.00023546	466.7799075336686	15.635	0.1594	15.635	15.57	15.729	0					17	6	4	0	0	0	0.34452	1	3537	3537		46.457	2.0796	1	1040200		+	38590	11643	26378	26470	39064	39064					0.07656876163093784
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7794189453125	2	466.779816	931.545079	-0.50287	-0.00023473	-0.24373	-0.00011377	-0.7466	-0.0003485	466.77970468047454	15.857	0.86741	15.857	15.647	16.515	0					35	17	4	0	0	0	0.098791	1	4281	4281		79.713	7.8351	1	44407000		+	38591	11643	26378	26470	39065	39065					0.07656876163093784
SSSRAVVVKK	10	Unmodified	_SSSRAVVVKK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	354.22052001953125	3	354.220624	1059.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.939	1	13.939	13.439	14.439	0								0	0	0	0.17743	1	2803	2803		66.962	31.81	1			+	38592	11643	26379	26471	39066	39066					0.11260809634268298
SSSRAVVVKK	10	Unmodified	_SSSRAVVVKK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.2204895019531	3	354.220624	1059.64004	0.7107	0.00025175	-1.2632	-0.00044746	-0.55253	-0.00019572	354.22018198195093	14.264	0.2828	14.264	14.184	14.467	0					17	7	4	0	0	0	0.13663	2	3435	3417;3435		89.029	46.165	1	1468600		+	38593	11643	26379	26471	39067;39068	39068					0.11260809634268298
SSSRAVVVKK	10	Unmodified	_SSSRAVVVKK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.2204895019531	3	354.220624	1059.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.214	1	14.214	13.714	14.714	0								0	0	0	0.091957	1	3637	3637		81.525	23.279	1			+	38594	11643	26379	26471	39069	39069					0.11260809634268298
SSSRAVVVKK	10	Unmodified	_SSSRAVVVKK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.2207336425781	3	354.220624	1059.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.015	1	14.015	13.515	14.515	0								0	0	0	0.27346	1	2900	2900		55.084	13.657	1			+	38595	11643	26379	26471	39070	39070					0.11260809634268298
SSSRAVVVKK	10	Unmodified	_SSSRAVVVKK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.2206726074219	3	354.220624	1059.64004	-0.053262	-1.8866E-05	-0.24879	-8.8126E-05	-0.30205	-0.00010699	354.2205356938654	14.214	0.17027	14.214	14.103	14.273	0					10	3	4	0	0	0	0.06456	1	3472	3472		104.42	47.791	1	1183700		+	38596	11643	26379	26471	39071	39071					0.11260809634268298
SSSRAVVVKK	10	Unmodified	_SSSRAVVVKK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.2205505371094	3	354.220624	1059.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.219	1	14.219	13.719	14.719	0								0	0	0	0.21987	1	3487	3487		61.765	20.986	1			+	38597	11643	26379	26471	39072	39072					0.11260809634268298
SSSRESVSK	9	Unmodified	_SSSRESVSK_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;TACC2|p.E1974Rfs*22|1|0.37|ENSG00000138162|chr10:122195118-122195119|-/C|frameshift_variant;TACC2|p.Q783Rfs*32|3|0.32|ENSG00000138162|chr10:122084841-122084841|C/-|frameshift_variant;TACC2|p.E1303Gfs*11|1|0.2|ENSG00000138162|chr10:122086403-122086404|-/G|frameshift_variant	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.74542236328125	2	483.74617	965.477788	-0.097107	-4.6975E-05	-0.23661	-0.00011446	-0.33371	-0.00016143	483.74607605084003	11.914	0.11947	11.914	11.83	11.949	0					8	3	3	0	0	0	0.046074	1	2548	2548		96.665	33.359	1	486610			38598	4235	26380	26472	39073	39073					-0.006331988385113618
SSSRGPLPVK	10	Unmodified	_SSSRGPLPVK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2987060546875	2	514.298373	1026.58219	0.61558	0.00031659	0.30572	0.00015723	0.9213	0.00047382	514.2986682821552	19.76	0.18653	19.76	19.658	19.844	0					7	4	2	0	0	0	0.65895	1	5419	5419		27.047	0.3544	1	85139			38599	4774	26381	26473	39074	39074					0.0699654770885445
SSSRLAEL	8	Unmodified	_SSSRLAEL_					0	0	0			REV__CDC42BPB|p.N918Tfs*5|1|0.27|ENSG00000198752|chr14:102963129-102963129|T/-|frameshift_variant	REV__CDC42BPB|p.N918Tfs*5|1|0.27|ENSG00000198752|chr14:102963129-102963129|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.7347412109375	2	431.735074	861.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.409	1	19.409	18.909	19.909	0								0	0	0	1.7419	1	6130	6130		63.306	0	1		+		38600	12389	26382	26474	39075	39075					0.01932621483706498
SSSSAPIVFK	10	Unmodified	_SSSSAPIVFK_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7792663574219	2	511.779482	1021.54441	1.3164	0.00067369	-0.96521	-0.00049397	0.35115	0.00017971	511.7787393896215	30.856	0.1774	30.856	30.805	30.982	0					5	4	2	0	0	0	0.43008	1	11180	11180		52.937	3.4952	1	40183			38601	6252	26383	26475	39076	39076					0.03450036723370431
SSSSKTFEK	9	Unmodified	_SSSSKTFEK_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK;TTK|p.R854Gfs*10|1|0.26|ENSG00000112742|chr6:80042180-80042181|AA/-|frameshift_variant;TTK|p.R854Gfs*39|1|0.4|ENSG00000112742|chr6:80042180-80042180|A/-|frameshift_variant	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7510986328125	2	500.750921	999.48729	0.66229	0.00033164	-0.2466	-0.00012349	0.41569	0.00020816	500.75076131648296	14.458	0.17157	14.458	14.378	14.55	0					8	4	3	0	0	0	0.037712	1	3517	3517		101.46	31.832	1	436990			38602	2759	26384	26476	39077	39077					-0.012474305529849516
SSSSKTFEK	9	Unmodified	_SSSSKTFEK_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK;TTK|p.R854Gfs*10|1|0.26|ENSG00000112742|chr6:80042180-80042181|AA/-|frameshift_variant;TTK|p.R854Gfs*39|1|0.4|ENSG00000112742|chr6:80042180-80042180|A/-|frameshift_variant	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7508239746094	2	500.750921	999.48729	-0.99686	-0.00049918	1.604	0.00080322	0.60718	0.00030404	500.7519271284187	14.144	0.089028	14.144	14.102	14.191	0					7	4	2	0	0	0	0.061298	1	3009	3009		91.265	41.824	1	102640			38603	2759	26384	26476	39078	39078					-0.012474305529849516
SSSSKTFEK	9	Unmodified	_SSSSKTFEK_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK;TTK|p.R854Gfs*10|1|0.26|ENSG00000112742|chr6:80042180-80042181|AA/-|frameshift_variant;TTK|p.R854Gfs*39|1|0.4|ENSG00000112742|chr6:80042180-80042180|A/-|frameshift_variant	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7513732910156	2	500.750921	999.48729	1.1036	0.00055261	-1.0536	-0.00052757	0.050011	2.5043E-05	500.7503029703701	14.399	0.21769	14.399	14.29	14.508	0					11	4	3	0	0	0	0.01942	1	3564	3564		122.94	43.227	1	901300			38604	2759	26384	26476	39079	39079					-0.012474305529849516
SSSSRSRSRSP	11	Unmodified	_SSSSRSRSRSP_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	398.53619384765625	3	398.537563	1192.59086	0.18435	7.347E-05	-2.2594	-0.00090046	-2.0751	-0.00082699	398.53654238738784	30.31	0.10725	30.31	30.262	30.369	0					4	2	2	0	0	0	0.74458	1	10319	10319		23.378	4.1152	1	43388			38605	2066	26385	26477	39080	39080					0.0022686960737701156
SSSSSSPFK	9	Unmodified	_SSSSSSPFK_					0	0	0		ERF|p.L525Sfs*6|3|0.27|ENSG00000105722|chr19:42248543-42248543|C/-|frameshift_variant;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000105722|P50548-2|ERF	ERF|p.L525Sfs*6|3|0.27|ENSG00000105722|chr19:42248543-42248543|C/-|frameshift_variant	ERF|p.L525Sfs*6|3|0.27|ENSG00000105722|chr19:42248543-42248543|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2167663574219	2	457.216714	912.418876	0.76685	0.00035062	-1.838	-0.00084034	-1.0711	-0.00048972	457.21623765632836	20.07	0.57867	20.07	19.869	20.447	0					27	12	4	0	0	0	0.078509	1	6178	6178		85.161	21.855	1	668790			38606	2391	26386	26478	39081	39081					-0.0408367513284702
SSSSTKLQ	8	Unmodified	_SSSSTKLQ_					0	0	0			REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.2192077636719	2	419.219257	836.423961	0.0023295	9.7655E-07	-0.02355	-9.8728E-06	-0.021221	-8.8962E-06	419.2192395484781	14.292	0.16457	14.292	14.184	14.348	0					5	3	2	0	0	0	0.58597	1	3685	3685		51.335	0	1	119390	+		38607	14722	26387	26479	39082	39082					-0.0007937127024888468
SSSSTVAE	8	Unmodified	_SSSSTVAE_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.C2696Sfs*49|1|0.18|ENSG00000142798|chr1:21847425-21847431|GCCCGGC/-|frameshift_variant;HSPG2|p.P3112Lfs*13|1|0.47|ENSG00000142798|chr1:21841279-21841279|G/-|frameshift_variant;HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.1744689941406	2	384.174515	766.334478	0.44821	0.00017219	-0.47535	-0.00018262	-0.027141	-1.0427E-05	384.17431688414297	14.357	0.14926	14.357	14.301	14.45	0					5	3	2	0	0	0	0.79882	1	3714	3714		19.36	0	1	651260			38608	4513	26388	26480	39083	39083					-0.05803625949624802
SSSSVAKLV	9	Unmodified	_SSSSVAKLV_					0	0	0			REV__TAGAP|p.F460V|1|0.23|ENSG00000164691|chr6:159036645-159036645|A/C|missense_variant	REV__TAGAP|p.F460V|1|0.23|ENSG00000164691|chr6:159036645-159036645|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2529296875	2	439.2531	876.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.118	1	24.118	23.618	24.618	0								0	0	0	0.14517	1	8079	8079		60.972	11.53	1		+		38609	21620	26389	26481	39084	39084					0.048460786605687645
SSSSVAKLV	9	Unmodified	_SSSSVAKLV_					0	0	0			REV__TAGAP|p.F460V|1|0.23|ENSG00000164691|chr6:159036645-159036645|A/C|missense_variant	REV__TAGAP|p.F460V|1|0.23|ENSG00000164691|chr6:159036645-159036645|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.2527770996094	2	439.2531	876.491647	-0.56694	-0.00024903	0.019155	8.4138E-06	-0.54778	-0.00024061	439.2530905049094	24.007	0.36747	24.007	23.78	24.147	0					15	7	4	0	0	0	0.16002	1	8224	8224		66.429	3.123	1	435400	+		38610	21620	26389	26481	39085	39085					0.048460786605687645
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7637023925781	2	467.763832	933.513111	0.040366	1.8882E-05	-2.3934	-0.0011196	-2.353	-0.0011007	467.7621781999102	22.597	0.32487	22.597	22.532	22.857	0					17	10	3	0	0	0	0.0061615	1	6421	6421		153.04	19.567	1	351810			38611	3166	26390	26482	39086	39086					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7635498046875	2	467.763832	933.513111	-0.43545	-0.00020369	-0.09014	-4.2164E-05	-0.52559	-0.00024585	467.76379899396915	22.591	0.23011	22.591	22.524	22.754	0					14	7	3	0	0	0	0.056004	1	6399	6399		93.143	27.678	1	553720			38612	3166	26390	26482	39087	39087					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7635192871094	2	467.763832	933.513111	0.33501	0.00015671	-3.1327	-0.0014654	-2.7977	-0.0013087	467.7620209454283	22.933	0.43048	22.933	22.846	23.277	0					28	10	5	0	0	0	0.0012088	1	7530	7530		180.87	62.126	1	2343700			38613	3166	26390	26482	39088	39088					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7635192871094	2	467.763832	933.513111	-0.64936	-0.00030375	0.10949	5.1218E-05	-0.53987	-0.00025253	467.76389662051395	22.963	0.30012	22.963	22.834	23.134	0					22	7	5	0	0	0	0.00324	1	7522	7522		167.23	48.486	1	2907300			38614	3166	26390	26482	39089	39089					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7635803222656	2	467.763832	933.513111	-1.0511	-0.00049168	0.55495	0.00025958	-0.49618	-0.00023209	467.764135686016	22.634	0.25987	22.634	22.565	22.825	0					20	9	3	0	0	0	5.4201E-05	1	6697	6697		195.06	64.032	1	1111800			38615	3166	26390	26482	39090	39090					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7635192871094	2	467.763832	933.513111	0.64301	0.00030078	-1.2391	-0.00057959	-0.59605	-0.00027881	467.7632158154639	22.853	0.66208	22.853	22.55	23.212	0					30	13	5	0	0	0	5.4201E-05	1	7803	7803		195.06	64.032	1	8474700			38616	3166	26390	26482	39091	39091					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.763671875	2	467.763832	933.513111	-0.7244	-0.00033885	0.3488	0.00016315	-0.3756	-0.00017569	467.76395256340703	22.698	0.18965	22.698	22.605	22.795	0					11	4	3	0	0	0	0.016683	1	6814	6814		127.46	37.092	1	967470			38617	3166	26390	26482	39092	39092					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7636413574219	2	467.763832	933.513111	0.5987	0.00028005	-1.3141	-0.00061467	-0.71537	-0.00033463	467.76318032812816	22.83	0.51176	22.83	22.622	23.133	0					28	10	5	0	0	0	0.0012088	1	7661	7661		180.87	44.601	1	6327300			38618	3166	26390	26482	39093	39093					0.04369463689283748
SSSTFGTGLG	10	Unmodified	_SSSTFGTGLG_					0	0	0		ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.21636962890625	2	457.216714	912.418876	0.87898	0.00040188	-2.8673	-0.001311	-1.9883	-0.0009091	457.2159450861364	19.986	0.52014	19.986	19.774	20.294	0					17	10	2	0	0	0	0.20011	1	6287	6287		79.451	5.196	1	702900			38619	1595	26391	26483	39094	39094					-0.04083675132835651
SSSTRPAH	8	Unmodified	_SSSTRPAH_					0	0	0			REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.70947265625	2	421.709391	841.404229	0.85129	0.000359	-0.70878	-0.0002989	0.14251	6.0099E-05	421.70912537314797	15.475	0.16716	15.475	15.417	15.584	0					7	3	3	0	0	0	0.46905	1	4253	4253		63.306	11.007	1	1184100	+		38620	15635	26392	26484	39095	39095					-0.022817024903361016
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.25555419921875	2	486.25584	970.497126	-0.032895	-1.5996E-05	-0.7778	-0.00037821	-0.81069	-0.0003942	486.25532908980534	25.191	0.19256	25.191	25.119	25.312	0					10	5	3	0	0	0	0.095583	1	7541	7541		80.455	3.6805	1	264980			38621	2	26393	26485	39096	39096					0.010697574523760522
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.25531005859375	2	486.25584	970.497126	0.69119	0.0003361	-1.0085	-0.00049037	-0.31726	-0.00015427	486.2550421511493	25.492	0.30298	25.492	25.333	25.636	0					24	7	5	0	0	0	0.022525	1	8711	8711		117.81	38.36	1	2123600			38622	2	26393	26485	39097	39097					0.010697574523760522
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2557067871094	2	486.25584	970.497126	0.3782	0.0001839	-0.86197	-0.00041914	-0.48377	-0.00023524	486.2554336697127	25.318	0.19161	25.318	25.222	25.414	0					7	4	2	0	0	0	0.21263	1	8022	8022		60.118	16.001	1	103770			38623	2	26393	26485	39098	39098					0.010697574523760522
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2558288574219	2	486.25584	970.497126	-0.24074	-0.00011706	0.093099	4.527E-05	-0.14764	-7.1789E-05	486.2558066019777	25.301	0.18709	25.301	25.21	25.397	0					11	4	3	0	0	0	0.19952	1	8034	8034		61.691	0.71934	1	371020			38624	2	26393	26485	39099	39099					0.010697574523760522
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2555236816406	2	486.25584	970.497126	-0.55333	-0.00026906	-0.45099	-0.0002193	-1.0043	-0.00048836	486.2555630031051	25.423	0.42031	25.423	25.213	25.633	0					17	8	3	0	0	0	0.095583	1	8885	8885		80.455	21.673	1	1125800			38625	2	26393	26485	39100	39100					0.010697574523760522
SSSVNQIK	8	Unmodified	_SSSVNQIK_					0	0	0			REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.7353820800781	2	431.735074	861.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.512	1	19.512	19.012	20.012	0								0	0	0	1.7419	1	5900	5900		51.335	0.14276	1		+		38626	17005	26394	26486	39101	39101					0.019326214837178668
SSSVSTVMTIG	11	Oxidation (M)	_SSSVSTVM(Oxidation (M))TIG_		SSSVSTVM(1)TIG		SSSVSTVM(50)TIG	0	0	1		tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.1771240234375	3	362.177873	1083.51179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.73	1	13.73	13.23	14.23	0								0	0	0	0.31508	1	3190	3190		50.034	12.222	1				38627	22899	26395	26487	39102	39102		825			-0.026625384617773307
SSSVVTLPAH	10	Unmodified	_SSSVVTLPAH_					0	0	0			REV__LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant	REV__LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.5416259765625	3	333.181946	996.52401	0.38893	0.00012959	-0.71399	-0.00023789	-0.32505	-0.0001083	333.1817766173562	16.638	0.30357	16.638	16.531	16.835	0					19	6	4	0	0	0	0.65051	1	4759	4759		28.081	1.3886	1	16283000	+		38628	15360	26396	26488	39103	39103					0.02560866063561207
SSSVVVLAGL	10	Unmodified	_SSSVVVLAGL_					0	0	0		ENST00000585357.1_1_19:38782298-38782643:+|nuORF	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2764587402344	2	466.276575	930.538597	0.43796	0.00020421	-0.30311	-0.00014133	0.13485	6.2876E-05	466.2764116516262	31.698	0.37571	31.698	31.613	31.988	0					21	9	3	0	0	0	0.17679	1	11559	11559		82.305	12.677	1	691260			38629	10893	26397	26489	39104	39104					0.07054938211717854
SSSVVVLAGL	10	Unmodified	_SSSVVVLAGL_					0	0	0		ENST00000585357.1_1_19:38782298-38782643:+|nuORF	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.27606201171875	2	466.276575	930.538597	-0.1349	-6.2902E-05	-0.41727	-0.00019456	-0.55217	-0.00025746	466.2763703337145	31.676	0.30216	31.676	31.524	31.827	0					14	6	3	0	0	0	0.42631	1	11934	11934		53.351	2.016	1	1081300			38630	10893	26397	26489	39105	39105					0.07054938211717854
SSSVVVLAGL	10	Unmodified	_SSSVVVLAGL_					0	0	0		ENST00000585357.1_1_19:38782298-38782643:+|nuORF	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2762145996094	2	466.276575	930.538597	-0.49866	-0.00023251	0.15121	7.0507E-05	-0.34745	-0.00016201	466.27658879681655	31.625	0.46388	31.625	31.471	31.935	0					19	9	3	0	0	0	0.069461	1	11835	11835		102.77	12.404	1	1189200			38631	10893	26397	26489	39106	39106					0.07054938211717854
SSTCESMF	8	Unmodified	_SSTCESMF_					0	0	0			REV__ENST00000469195.5_3_6:35227376-35248953:+|nuORF	REV__ENST00000469195.5_3_6:35227376-35248953:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.1655578613281	2	446.164779	890.315004	0.58885	0.00026273	-1.5551	-0.00069384	-0.96626	-0.00043111	446.1653804437026	49.882	0.36174	49.882	49.733	50.094	0					47	14	4	0	0	0	0.8006	1	18733	18733		20.482	4.8456	1	870910	+		38632	18690	26398	26490	39107	39107					-0.13454041556371976
SSTCGSHTV	9	Unmodified	_SSTCGSHTV_					0	0	0		ENSG00000182263|ENST00000333129|FIGN;FIGN|p.T288Pfs*13|1|0.37|ENSG00000182263|chr2:163610971-163610971|G/-|frameshift_variant	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.68499755859375	2	439.687267	877.359981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.328	1	37.328	36.828	37.828	0								0	0	0	0.37821	1	12626	12626		17.365	3.5896	1				38633	6888	26399	26491	39108	39108					-0.08360474698849885
SSTDINVKK	9	Unmodified	_SSTDINVKK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2742614746094	2	496.274564	990.534574	-0.061142	-3.0343E-05	-0.27934	-0.00013863	-0.34048	-0.00016897	496.27436564602914	16.408	0.10801	16.408	16.339	16.447	0					7	4	2	0	0	0	0.17854	1	3718	3718		64.207	16.292	1	191410			38634	5726	26400	26492	39109	39109					0.03892848717987363
SSTDINVKK	9	Unmodified	_SSTDINVKK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.2744445800781	2	496.274564	990.534574	-0.3602	-0.00017876	0.25413	0.00012612	-0.10608	-5.2644E-05	496.27465611647636	16.687	0.30208	16.687	16.438	16.74	0					9	7	2	0	0	0	0.0097668	1	4569	4569		141.52	31.401	1	707090			38635	5726	26400	26492	39110	39110					0.03892848717987363
SSTDINVKK	9	Unmodified	_SSTDINVKK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2743835449219	2	496.274564	990.534574	-1.1935	-0.00059229	0.92142	0.00045728	-0.27206	-0.00013502	496.2749659232668	16.401	0.096809	16.401	16.346	16.443	0					7	3	3	0	0	0	0.023928	1	3929	3929		115.49	33.254	1	343990			38636	5726	26400	26492	39111	39111					0.03892848717987363
SSTDINVKK	9	Unmodified	_SSTDINVKK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.27423095703125	2	496.274564	990.534574	-2.3692	-0.0011758	2.3588	0.0011706	-0.010389	-5.1556E-06	496.27562004011173	16.439	0.27305	16.439	16.322	16.595	0					11	7	3	0	0	0	0.04067	1	3902	3902		98.582	16.277	1	386020			38637	5726	26400	26492	39112	39112					0.03892848717987363
SSTDINVKK	9	Unmodified	_SSTDINVKK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.27459716796875	2	496.274564	990.534574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.649	1	16.649	16.149	17.149	0								0	0	0	0.0026431	1	4650	4650		117.81	13.754	1				38638	5726	26400	26492	39113	39113					0.03892848717987363
SSTERDRSL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSTERDRSL_					1	0	0			REV__KIF9|p.D543Y|1|0.16|ENSG00000088727|chr3:47243133-47243133|C/A|missense_variant	REV__KIF9|p.D543Y|1|0.16|ENSG00000088727|chr3:47243133-47243133|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7699584960938	2	546.767634	1091.52072	3.8069	0.0020815	1.3235	0.00072366	5.1305	0.0028052	546.7683241931569	32.086	0.36895	32.086	31.935	32.304	0					20	7	3	0	0	0	0.0792	1	12055	12055		84.916	7.5979	1	733860	+		38639	13393	26401	26493	39114	39114					-0.02138428781086077
SSTGCYLLPPA	11	Unmodified	_SSTGCYLLPPA_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.7723999023438	2	554.7708	1107.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.129	1	19.129	18.629	19.629	0								0	0	0	0.40668	1	5126	5126		35.618	2.8059	1		+		38640	15795	26402	26494	39115	39115					-0.02241626873910718
SSTLESGT	8	Unmodified	_SSTLESGT_					0	0	0		ENSG00000166402|ENST00000299506|TUB;nc|ENSG00000166402|P50607-2|TUB	ENSG00000166402|ENST00000299506|TUB	ENSG00000166402|ENST00000299506|TUB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	391.1822204589844	2	391.18234	780.350128	-0.12522	-4.8983E-05	0.014026	5.4868E-06	-0.11119	-4.3497E-05	391.1823118823688	18.287	0.7355	18.287	18.067	18.803	0					38	17	3	0	0	0	0.68754	1	5329	5329		35.201	0	1	8125400			38641	5895	26403	26495	39116	39116					-0.04883339432547018
SSTMWTTLK	9	Unmodified	_SSTMWTTLK_					0	0	0		ENST00000589664.5_1_17:76200913-76202102:+|nuORF;ENST00000587750.5_1_17:76198611-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7660522460938	2	527.765517	1053.51648	2.1405	0.0011297	-1.2057	-0.00063635	0.93479	0.00049335	527.7649508533333	36.327	0.25866	36.327	36.211	36.469	0					17	7	3	0	0	0	0.037924	1	13684	13684		101.25	23.935	1	520160			38642	10914	26404	26496	39117	39117					-0.008136095283816758
SSTMWTTLK	9	Unmodified	_SSTMWTTLK_					0	0	0		ENST00000589664.5_1_17:76200913-76202102:+|nuORF;ENST00000587750.5_1_17:76198611-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.765625	2	527.765517	1053.51648	0.26202	0.00013828	0.25172	0.00013285	0.51373	0.00027113	527.7655347162049	36.096	0.258	36.096	35.987	36.245	0					22	11	3	0	0	0	0.30841	1	12221	12221		49.536	7.1399	1	152860			38643	10914	26404	26496	39118	39118					-0.008136095283816758
SSTMWTTLK	9	Unmodified	_SSTMWTTLK_					0	0	0		ENST00000589664.5_1_17:76200913-76202102:+|nuORF;ENST00000587750.5_1_17:76198611-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7657470703125	2	527.765517	1053.51648	1.7525	0.00092492	-1.7806	-0.00093973	-0.028061	-1.4809E-05	527.76430678545	36.321	0.6249	36.321	35.985	36.61	0					29	18	3	0	0	0	0.020674	1	14129	14129		120.87	35.509	1	934250			38644	10914	26404	26496	39119	39119					-0.008136095283816758
SSTMWTTLK	9	Unmodified	_SSTMWTTLK_					0	0	0		ENST00000589664.5_1_17:76200913-76202102:+|nuORF;ENST00000587750.5_1_17:76198611-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	ENST00000589664.5_1_17:76200913-76202102:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7658081054688	2	527.765517	1053.51648	1.6294	0.00085996	-1.372	-0.00072409	0.25745	0.00013587	527.7643677531596	36.247	0.56552	36.247	35.963	36.529	0					24	11	4	0	0	0	0.056004	1	14068	14068		93.143	27.678	1	956690			38645	10914	26404	26496	39120	39120					-0.008136095283816758
SSTPASVTAI	10	Unmodified	_SSTPASVTAI_					0	0	0		nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439|CBFA2T2	nc|ENSG00000078699|O43439|CBFA2T2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2478332519531	2	467.248015	932.481476	-0.13226	-6.1796E-05	-0.23465	-0.00010964	-0.36691	-0.00017144	467.24794169437126	21.634	0.11647	21.634	21.575	21.692	0					4	2	2	0	0	0	0.39566	1	7218	7218		56.721	5.3856	1	204660			38646	11441	26405	26497	39121	39121					0.012534709353303697
SSTPSPKQRSK	11	Unmodified	_SSTPSPKQRSK_					0	0	0		nc|ENSG00000106948|Q7Z591-5|AKNA;nc|ENSG00000106948|Q7Z591-8|AKNA;nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-4|AKNA	nc|ENSG00000106948|Q7Z591-5|AKNA	nc|ENSG00000106948|Q7Z591-5|AKNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.5542907714844	3	401.554443	1201.6415	0.50026	0.00020088	-0.7343	-0.00029486	-0.23404	-9.3981E-05	401.55397952133626	20.386	0.26854	20.386	20.226	20.494	0					10	5	3	0	0	0	0.60656	1	6479	6479		38.714	16.152	1	840060			38647	2466	26406	26498	39122	39122					0.04874398932361146
SSTSSLAAPG	10	Unmodified	_SSTSSLAAPG_					0	0	0		nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2166748046875	2	439.216714	876.418876	0.63122	0.00027724	-1.3571	-0.00059607	-0.7259	-0.00031883	439.2163247932287	12.761	0.18331	12.761	12.671	12.854	0					7	4	2	0	0	0	0.64178	1	2984	2984		29.15	2.3535	1	133410			38648	2008	26407	26499	39123	39123					-0.02427675132855711
SSTVATRPQK	10	Unmodified	_SSTVATRPQK_					0	0	0		ENSG00000160401|ENST00000373295|CFAP157	ENSG00000160401|ENST00000373295|CFAP157	ENSG00000160401|ENST00000373295|CFAP157	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.8015747070312	2	537.798737	1073.58292	1.4221	0.0007648	-0.75558	-0.00040635	0.66652	0.00035845	537.7978103224401	15.551	0.1155	15.551	15.517	15.633	0					6	4	2	0	0	0	0.39827	1	3411	3411		56.434	6.9922	1	141380			38649	5361	26408	26500	39124	39124					0.04907342357910238
SSTVQSTVL	9	Unmodified	_SSTVQSTVL_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2474670410156	2	461.248015	920.481476	0.78481	0.00036199	-2.2952	-0.0010586	-1.5104	-0.00069665	461.2468945261602	17.188	0.1322	17.188	17.102	17.235	0					6	3	2	0	0	0	0.33044	1	4820	4820		47.657	5.1829	1	190590	+		38650	16839	26409	26501	39125	39125					0.018054709353350518
SSTVVVPG	8	Unmodified	_SSTVVVPG_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-3|VSX1	REV__nc|ENSG00000100987|Q9NZR4-3|VSX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.54400634765625	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.374	1	47.374	46.874	47.874	0								0	0	0	1.7419	1	18102	18102		35.201	5.3592	1		+		38651	20957	26410	26502	39126	39126					0.01934449052009768
SSVDLYQK	8	Unmodified	_SSVDLYQK_					0	0	0			REV__ENST00000519659.5_1_5:167833263-167837001:+|nuORF	REV__ENST00000519659.5_1_5:167833263-167837001:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.24237060546875	2	470.242732	938.470912	-0.22052	-0.0001037	-0.63297	-0.00029765	-0.8535	-0.00040135	470.24248372140556	20.803	0.15101	20.803	20.708	20.859	0					9	3	3	0	0	0	0.58597	1	5907	5907		51.335	0	1	221040	+		38652	14051	26411	26503	39127	39127					-0.0007851171908441756
SSVFLAIKK	9	Unmodified	_SSVFLAIKK_					0	0	0		ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.81036376953125	2	496.810585	991.606617	-0.059074	-2.9348E-05	-0.33253	-0.0001652	-0.3916	-0.00019455	496.8104704771374	29.751	0.23027	29.751	29.637	29.868	0					22	10	3	0	0	0	0.087861	1	9399	9399		82.241	42.988	1	308470			38653	8393	26412	26504	39128	39128					0.1104780786236006
SSVFLAIKK	9	Unmodified	_SSVFLAIKK_					0	0	0		ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	331.5428161621094	3	331.542816	991.606617	0.64486	0.0002138	-0.91986	-0.00030497	-0.275	-9.1174E-05	331.5425114379467	30.052	0.16734	30.052	29.972	30.139	0					11	4	3	0	0	0	0.41113	1	10789	10789		56.434	32.911	1	274230			38654	8393	26412	26504	39129	39129					0.1104780786236006
SSVFLAIKK	9	Unmodified	_SSVFLAIKK_					0	0	0		ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.8103942871094	2	496.810585	991.606617	-0.32665	-0.00016228	0.064097	3.1844E-05	-0.26256	-0.00013044	496.81059529590226	30.047	0.32254	30.047	29.922	30.245	0					26	8	4	0	0	0	0.021961	1	10779	10779		118.74	46.866	1	1823800			38655	8393	26412	26504	39130	39130					0.1104780786236006
SSVFLAIKK	9	Unmodified	_SSVFLAIKK_					0	0	0		ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.8105163574219	2	496.810585	991.606617	-1.4021	-0.00069657	0.50988	0.00025331	-0.89222	-0.00044326	496.8109198836973	29.788	0.13524	29.788	29.742	29.877	0					7	5	2	0	0	0	0.53083	1	9726	9726		29.15	0	1	34935			38656	8393	26412	26504	39131	39131					0.1104780786236006
SSVFLAIKK	9	Unmodified	_SSVFLAIKK_					0	0	0		ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.5426940917969	3	331.542816	991.606617	0.38956	0.00012916	-0.67785	-0.00022474	-0.28829	-9.5581E-05	331.54256506697783	30.017	0.20662	30.017	29.916	30.122	0					8	4	3	0	0	0	0.60749	1	11186	11186		35.152	21.698	1	321690			38657	8393	26412	26504	39132	39132					0.1104780786236006
SSVFLAIKK	9	Unmodified	_SSVFLAIKK_					0	0	0		ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.81060791015625	2	496.810585	991.606617	-0.76029	-0.00037772	-0.044824	-2.2269E-05	-0.80511	-0.00039999	496.8108167466958	30.004	0.20835	30.004	29.884	30.092	0					8	4	2	0	0	0	0.1115	1	11154	11154		76.774	21.27	1	230710			38658	8393	26412	26504	39133	39133					0.1104780786236006
SSVFLAIKK	9	Unmodified	_SSVFLAIKK_					0	0	0		ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	ENST00000274030.10_1_4:120160492-120160642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.5428161621094	3	331.542816	991.606617	-0.0041861	-1.3879E-06	-0.053271	-1.7662E-05	-0.057457	-1.905E-05	331.54275964300297	29.956	0.26728	29.956	29.896	30.163	0					9	5	3	0	0	0	0.45358	1	11043	11043		52.937	25.054	1	583800			38659	8393	26412	26504	39134	39134					0.1104780786236006
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2528076171875	2	439.2531	876.491647	0.27076	0.00011893	-0.67524	-0.0002966	-0.40448	-0.00017767	439.2528283377694	23.263	0.27045	23.263	23.183	23.453	0					16	7	4	0	0	0	0.014413	1	6696	6696		131.62	43.92	1	1057500			38660	1564	26413	26505	39135	39135					0.048460786605687645
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.2528381347656	2	439.2531	876.491647	-1.0099	-0.00044358	0.63797	0.00028023	-0.37188	-0.00016335	439.2533509518686	23.308	0.65394	23.308	23.179	23.833	0					46	22	4	0	0	0	0.0030642	1	6977	6977		168.26	51.355	1	1957300			38661	1564	26413	26505	39136	39136					0.048460786605687645
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.25274658203125	2	439.2531	876.491647	0.32847	0.00014428	-1.3972	-0.00061374	-1.0688	-0.00046946	439.2526184871728	23.33	0.15074	23.33	23.267	23.418	0					6	3	2	0	0	0	0.085655	1	7106	7106		82.75	27.974	1	142510			38662	1564	26413	26505	39137	39137					0.048460786605687645
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2528076171875	2	439.2531	876.491647	-0.5897	-0.00025903	0.089311	3.923E-05	-0.50039	-0.0002198	439.25315841432104	23.347	0.27497	23.347	23.251	23.526	0					19	6	4	0	0	0	0.026848	1	7098	7098		112.11	32.395	1	2187200			38663	1564	26413	26505	39138	39138					0.048460786605687645
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;TPD52|p.K164Sfs*5|1|0.09|ENSG00000076554|chr8:80051542-80051542|T/-|frameshift_variant	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.2528076171875	2	439.2531	876.491647	-0.56778	-0.0002494	0.064218	2.8208E-05	-0.50357	-0.00022119	439.25313803100397	23.492	0.3615	23.492	23.385	23.747	0					18	7	4	0	0	0	0.012936	1	7983	7983		134.77	47.011	1	2144000			38664	1564	26413	26505	39139	39139					0.048460786605687645
SSVGSVITKK	10	Unmodified	_SSVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.30023193359375	2	503.300581	1004.58661	-0.053637	-2.6996E-05	-0.12093	-6.0865E-05	-0.17457	-8.7861E-05	503.3004669200056	19.701	0.20779	19.701	19.594	19.802	0					12	6	3	0	0	0	0.13663	1	5136	5136		89.029	27.338	1	856590			38665	1564	26414	26506	39140	39140					0.08450012131754647
SSVGSVITKK	10	Unmodified	_SSVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.3002014160156	2	503.300581	1004.58661	-0.064151	-3.2287E-05	-0.40802	-0.00020535	-0.47217	-0.00023764	503.3003314855024	20.059	0.38704	20.059	19.903	20.29	0					15	8	4	0	0	0	0.012356	1	6145	6145		133.99	48.833	1	4758800			38666	1564	26414	26506	39141	39141					0.08450012131754647
SSVGSVITKK	10	Unmodified	_SSVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.3004455566406	2	503.300581	1004.58661	-0.8642	-0.00043495	0.60999	0.00030701	-0.25421	-0.00012794	503.3008748613042	19.729	0.1712	19.729	19.637	19.808	0					17	6	4	0	0	0	0.33468	1	5397	5397		63.426	3.4957	1	845060			38667	1564	26414	26506	39142	39142					0.08450012131754647
SSVGSVITKK	10	Unmodified	_SSVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.30047607421875	2	503.300581	1004.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.92	1	19.92	19.42	20.42	0								0	0	0	0.00051531	1	6377	6377		148.69	50.061	1				38668	1564	26414	26506	39143	39143					0.08450012131754647
SSVGTRILK	9	Unmodified	_SSVGTRILK_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7948303222656	2	480.795466	959.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.082	1	12.082	11.582	12.582	0								0	0	0	0.3245	1	2489	2489		30.318	6.795	1		+		38669	16026	26415	26507	39144	39144					0.0949744919718114
SSVILFLNK	9	Unmodified	_SSVILFLNK_					0	0	0		ENSG00000156052|ENST00000286548|GNAQ;ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENSG00000156049|ENST00000341700|GNA14;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000156052|ENST00000286548|GNAQ;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENST00000586180.1_1_19:3118803-3121174:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.8078918457031	2	510.808042	1019.60153	3.0619	0.0015641	-3.5667	-0.0018219	-0.5048	-0.00025786	510.8063370651292	44.587	0.13715	44.587	44.522	44.659	0					8	5	2	0	0	0	0.22377	1	17865	17865		58.782	5.4305	1	91808			38670	1775;10901	26416	26508	39145	39145					0.09251503999746546
SSVNAYAK	8	Unmodified	_SSVNAYAK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.2162780761719	2	420.216517	838.418482	0.4202	0.00017658	-0.76438	-0.0003212	-0.34417	-0.00014463	420.21607035136174	19.24	0.15596	19.24	19.138	19.294	0					5	3	2	0	0	0	0.73426	1	5781	5781		29.15	4.9468	1	115470	+		38671	15602;22247	26417	26509	39146	39146					-0.007190500620481544
SSVPGADIK	9	Unmodified	_SSVPGADIK_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.237060546875	2	437.23745	872.460347	-0.55847	-0.00024418	-1.1764	-0.00051438	-1.7349	-0.00075857	437.2371508223066	16.658	0.31273	16.658	16.401	16.714	0					12	6	2	0	0	0	0.13267	1	4669	4669		71.877	10.906	1	255240			38672	4633	26418	26510	39147	39147					0.019015056264606756
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;VIM|p.R71W|1|0.4|ENSG00000026025|chr10:17229633-17229633|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2841491699219	2	464.284734	926.554916	0.57342	0.00026623	-0.73184	-0.00033978	-0.15841	-7.3548E-05	464.28431241814474	39.636	0.27302	39.636	39.559	39.832	0					28	11	3	0	0	0	0.063823	1	15107	15107		90.37	33.649	1	446340			38673	1132	26419	26511	39148	39148					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;VIM|p.R71W|1|0.4|ENSG00000026025|chr10:17229633-17229633|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.28277587890625	2	464.284734	926.554916	0.69259	0.00032156	-2.0979	-0.000974	-1.4053	-0.00065244	464.28372479546096	39.574	0.313	39.574	39.456	39.769	0					19	11	2	0	0	0	0.24095	1	15566	15566		56.721	7.2795	1	605060			38674	1132	26419	26511	39149	39149					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;VIM|p.R71W|1|0.4|ENSG00000026025|chr10:17229633-17229633|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.28436279296875	2	464.284734	926.554916	-0.48311	-0.0002243	0.30803	0.00014301	-0.17508	-8.1289E-05	464.28485381581106	39.535	0.2793	39.535	39.438	39.718	0					11	6	2	0	0	0	0.0792	1	15641	15641		84.916	33.723	1	540070			38675	1132	26419	26511	39150	39150					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;VIM|p.R71W|1|0.4|ENSG00000026025|chr10:17229633-17229633|C/T|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.284423828125	2	464.284734	926.554916	0.72459	0.00033642	-1.1244	-0.00052206	-0.39985	-0.00018564	464.28413361738	39.534	0.37526	39.534	39.421	39.796	0					22	8	3	0	0	0	0.1424	1	15618	15618		69.628	16.276	1	733950			38676	1132	26419	26511	39151	39151					0.0887006416847953
SSVPPLADGP	10	Unmodified	_SSVPPLADGP_					0	0	0			REV__nc|ENSG00000177106|Q9H6S3-2|EPS8L2	REV__nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2425537109375	2	470.242732	938.470912	-0.12527	-5.8905E-05	-0.59461	-0.00027961	-0.71988	-0.00033852	470.24252358158896	20.894	0.16448	20.894	20.83	20.995	0					10	3	4	0	0	0	0.30737	1	6851	6851		66.429	2.222	1	548650	+		38677	16686	26420	26512	39152	39152					-0.0007851171909578625
SSVPYSTAK	9	Unmodified	_SSVPYSTAK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.24237060546875	2	470.242732	938.470912	0.0046639	2.1932E-06	-0.97656	-0.00045922	-0.9719	-0.00045703	470.24239957645375	20.704	0.24464	20.704	20.558	20.802	0					15	7	3	0	0	0	0.24334	1	5581	5581		56.434	6.9922	1	388090			38678	3494	26421	26513	39153	39153					-0.0007851171908441756
SSVPYSTAK	9	Unmodified	_SSVPYSTAK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2427978515625	2	470.242732	938.470912	-0.53781	-0.0002529	0.48019	0.00022581	-0.057623	-2.7097E-05	470.24294634778767	20.902	0.31619	20.902	20.793	21.11	0					20	6	4	0	0	0	0.076532	1	6725	6725		85.862	6.1492	1	2124400			38679	3494	26421	26513	39154	39154					-0.0007851171908441756
SSVPYSTAK	9	Unmodified	_SSVPYSTAK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.24249267578125	2	470.242732	938.470912	0.53527	0.0002517	-1.5875	-0.00074652	-1.0522	-0.00049481	470.24232362485293	20.923	0.51808	20.923	20.575	21.093	0					24	10	4	0	0	0	0.13726	1	6745	6745		70.816	4.3869	1	2250600			38680	3494	26421	26513	39155	39155					-0.0007851171908441756
SSVRTKLIQ	9	Unmodified	_SSVRTKLIQ_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.5450439453125	3	344.545108	1030.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.694	1	21.694	21.194	22.194	0								0	0	0	0.23111	1	6269	6269		46.457	1.4346	1				38681	4489	26422	26514	39156	39156					0.09941120742928433
SSVRTKLIQ	9	Unmodified	_SSVRTKLIQ_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.545166015625	3	344.545108	1030.61349	1.4671	0.00050548	-1.7218	-0.00059325	-0.25474	-8.777E-05	344.54462624227904	21.866	0.26255	21.866	21.759	22.021	0					12	5	3	0	0	0	0.18416	1	7329	7329		63.534	1.8426	1	1165700			38682	4489	26422	26514	39157	39157					0.09941120742928433
SSVSAVAVVL	10	Unmodified	_SSVSAVAVVL_					0	0	0			REV__PCDHB12|p.L694V|1|0.14|ENSG00000120328|chr5:141210987-141210987|T/G|missense_variant	REV__PCDHB12|p.L694V|1|0.14|ENSG00000120328|chr5:141210987-141210987|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.27642822265625	2	466.276575	930.538597	0.062215	2.9009E-05	-0.61254	-0.00028561	-0.55032	-0.0002566	466.27614583642634	31.393	0.18135	31.393	31.316	31.497	0					10	7	2	0	0	0	0.4943	1	10087	10087		45.952	5.1738	1	86176	+		38683	21345	26423	26515	39158	39158					0.07054938211717854
SSVSLSLKG	9	Unmodified	_SSVSLSLKG_					0	0	0		ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.2530822753906	2	439.2531	876.491647	3.1585	0.0013874	-2.8594	-0.001256	0.2991	0.00013138	439.25189331651643	23.809	0.12626	23.809	23.743	23.869	0					6	4	2	0	0	0	0.45358	1	7213	7213		37.159	5.2042	1	59111			38684	4155	26424	26516	39159	39159					0.04846078660580133
SSVSLSLKG	9	Unmodified	_SSVSLSLKG_					0	0	0		ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2528991699219	2	439.2531	876.491647	-0.36789	-0.0001616	-0.13394	-5.8834E-05	-0.50183	-0.00022043	439.2530483570538	24.02	0.26516	24.02	23.915	24.18	0					10	5	3	0	0	0	0.37197	1	8387	8387		44.117	5.3107	1	495710			38685	4155	26424	26516	39160	39160					0.04846078660580133
SSVTPSPAK	9	Unmodified	_SSVTPSPAK_					0	0	0		ENST00000543990.1_1_12:12510385-12588788:+|nuORF;ENSG00000165714|ENST00000314565|BORCS5	ENST00000543990.1_1_12:12510385-12588788:+|nuORF	ENST00000543990.1_1_12:12510385-12588788:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2370910644531	2	437.23745	872.460347	0.037526	1.6408E-05	0.0012253	5.3574E-07	0.038751	1.6944E-05	437.237386677278	16.683	0.17781	16.683	16.59	16.768	0					6	4	2	0	0	0	0.27249	1	4580	4580		52.937	0	1	70460			38686	5825	26425	26517	39161	39161					0.019015056264720442
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__nc|ENSG00000126787|Q15398-1|DLGAP5	REV__nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29058837890625	2	501.290548	1000.56654	-0.58821	-0.00029486	1.1263	0.00056461	0.5381	0.00026974	501.2912357100857	15.468	0.80177	15.468	15.364	16.166	0					47	16	6	0	0	0	0.054723	1	4070	4070		67.494	0	1	40149000	+		38687	12714	26426	26518	39162	39162					0.06628261191804086
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__nc|ENSG00000126787|Q15398-1|DLGAP5	REV__nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29052734375	2	501.290548	1000.56654	1.1206	0.00056174	-0.82371	-0.00041292	0.29688	0.00014882	501.2905346901857	15.453	1.4553	15.453	15.195	16.65	0					90	29	5	0	0	0	0.040209	1	4062	4062		63.534	0	1	136240000	+		38688	12714	26426	26518	39163	39163					0.06628261191804086
SSVVALYNL	9	Unmodified	_SSVVALYNL_					0	0	0			REV__ENST00000469188.1_1_5:56183212-56183548:+|nuORF	REV__ENST00000469188.1_1_5:56183212-56183548:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2682189941406	2	483.26875	964.522947	0.3272	0.00015813	-1.0427	-0.00050391	-0.71552	-0.00034579	483.26831143641806	29.637	0.46586	29.637	29.456	29.922	0					19	11	2	0	0	0	0.38666	1	10576	10576		44.117	4.864	1	69184	+		38689	19452	26427	26519	39164	39164					0.039266516946554475
SSVVPSVYK	9	Unmodified	_SSVVPSVYK_					0	0	0		ENSG00000159592|ENST00000355105|GPBP1L1	ENSG00000159592|ENST00000355105|GPBP1L1	ENSG00000159592|ENST00000355105|GPBP1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.26873779296875	2	483.26875	964.522947	-0.099207	-4.7944E-05	-0.79663	-0.00038499	-0.89584	-0.00043293	483.26852649317254	29.924	0.64688	29.924	29.429	30.076	0					22	13	2	0	0	0	0.11411	1	11027	11027		69.628	14.851	1	282980			38690	5322	26428	26520	39165	39165					0.03926651694666816
SSWSDPTRVE	10	Unmodified	_SSWSDPTRVE_					0	0	0		ENSG00000117400|ENST00000372470|MPL;nc|ENSG00000117400|P40238-2|MPL	ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	388.5164489746094	3	388.515765	1162.52547	0.55524	0.00021572	0.24133	9.3762E-05	0.79657	0.00030948	388.51577812560737	22.13	0.1743	22.13	22.023	22.198	0					7	5	2	0	0	0	0.66185	1	6206	6206		19.263	2.7328	1	87863			38691	3036	26429	26521	39166	39166					-0.04929544638321204
SSYAMDAFAL	10	Unmodified	_SSYAMDAFAL_					0	0	0			REV__OR5P2|p.I305Nfs*5|1|0.38|ENSG00000183303|chr11:7796029-7796030|-/T|frameshift_variant	REV__OR5P2|p.I305Nfs*5|1|0.38|ENSG00000183303|chr11:7796029-7796030|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2421875	2	538.241875	1074.4692	2.0491	0.0011029	-1.2642	-0.00068046	0.78488	0.00042246	538.2411955180654	31.764	0.65812	31.764	31.291	31.949	0					27	16	3	0	0	0	0.60076	1	11597	11597		34.173	3.6689	1	132100	+		38692	16925	26430	26522	39167	39167					-0.06505888799370041
SSYATLCEK	9	Unmodified	_SSYATLCEK_					0	0	0			REV__ENST00000495428.5_1_3:28333426-28360268:+|nuORF	REV__ENST00000495428.5_1_3:28333426-28360268:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2340393066406	2	501.23405	1000.45355	-0.40773	-0.00020437	0.26068	0.00013066	-0.14705	-7.3706E-05	501.23421787540383	29.948	0.54627	29.948	29.587	30.133	0					21	14	2	0	0	0	0.44593	1	10024	10024		37.812	6.2817	1	231010	+		38693	19761	26431	26523	39168	39168					-0.04666175316401677
SSYATLCEK	9	Unmodified	_SSYATLCEK_					0	0	0			REV__ENST00000495428.5_1_3:28333426-28360268:+|nuORF	REV__ENST00000495428.5_1_3:28333426-28360268:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.2337646484375	2	501.23405	1000.45355	-0.59345	-0.00029746	0.35034	0.0001756	-0.24311	-0.00012186	501.23428510826375	30.108	1.7999	30.108	28.658	30.458	0					76	36	3	0	0	0	0.21263	1	11117	11117		60.118	4.6141	1	1878900	+		38694	19761	26431	26523	39169	39169					-0.04666175316401677
SSYGEHPKR	9	Unmodified	_SSYGEHPKR_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7625732421875	2	530.762155	1059.50976	1.7262	0.0009162	-0.727	-0.00038586	0.9992	0.00053034	530.76173224296	13.381	0.15034	13.381	13.282	13.433	0					5	3	2	0	0	0	0.3269	1	3258	3258		47.96	0.30219	1	448950			38695	1451	26432	26524	39170	39170					-0.01761786364704676
SSYLNTVQK	9	Unmodified	_SSYLNTVQK_					0	0	0		ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2745971679688	2	520.274564	1038.53457	0.2534	0.00013184	-0.27191	-0.00014147	-0.018507	-9.6286E-06	520.2744482760362	25.592	0.16999	25.592	25.531	25.701	0					9	5	2	0	0	0	0.13726	1	7973	7973		70.816	1.1886	1	172890			38696	6767	26433	26525	39171	39171					0.016848487180141092
SSYLNTVQK	9	Unmodified	_SSYLNTVQK_					0	0	0		ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.275634765625	2	520.274564	1038.53457	1.008	0.00052445	0.60649	0.00031554	1.6145	0.00083999	520.2744586027894	25.679	0.14215	25.679	25.608	25.75	0					5	3	2	0	0	0	0.12278	1	8198	8198		74.165	24.14	1	97736			38697	6767	26433	26525	39172	39172					0.016848487180141092
SSYLNTVQK	9	Unmodified	_SSYLNTVQK_					0	0	0		ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2745971679688	2	520.274564	1038.53457	-1.3507	-0.00070272	1.5885	0.00082645	0.23781	0.00012373	520.2751968988692	25.678	0.13805	25.678	25.597	25.735	0					5	3	2	0	0	0	0.067603	1	8185	8185		89.029	6.7883	1	143770			38698	6767	26433	26525	39173	39173					0.016848487180141092
SSYLQIHQK	9	Unmodified	_SSYLQIHQK_					0	0	0		ENST00000588883.5_1_19:44679604-44681824:+|nuORF;ENSG00000167380|ENST00000337433|ZNF226	ENST00000588883.5_1_19:44679604-44681824:+|nuORF	ENST00000588883.5_1_19:44679604-44681824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.5330810546875	3	368.532979	1102.57711	0.76411	0.0002816	-2.1011	-0.00077434	-1.337	-0.00049274	368.532125977534	23.424	0.43958	23.424	23.222	23.661	0					23	10	3	0	0	0	0.42902	1	7713	7713		39.253	5.3312	1	651190			38699	5987	26434	26526	39174	39174					0.029922438462108403
SSYLQIHQK	9	Unmodified	_SSYLQIHQK_					0	0	0		ENST00000588883.5_1_19:44679604-44681824:+|nuORF;ENSG00000167380|ENST00000337433|ZNF226	ENST00000588883.5_1_19:44679604-44681824:+|nuORF	ENST00000588883.5_1_19:44679604-44681824:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.53314208984375	3	368.532979	1102.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.252	1	23.252	22.752	23.752	0								0	0	0	0.25587	1	7858	7858		42.864	4.1107	1				38700	5987	26434	26526	39175	39175					0.029922438462108403
SSYPGLVAK	9	Unmodified	_SSYPGLVAK_					0	0	0		nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;HEPH|p.R1086Qfs*4|1|0.29|ENSG00000089472|chrX:66266444-66266445|-/C|frameshift_variant	nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2554626464844	2	461.255643	920.496732	-0.15034	-6.9347E-05	-0.48495	-0.00022368	-0.63529	-0.00029303	461.2554169016609	27.722	0.54859	27.722	27.523	28.071	0					19	11	2	0	0	0	0.19605	2	10039	10020;10039		62.107	24.948	1	1462600			38701	1815	26435	26527	39176;39177	39177					0.03330382523188291
SSYPVCVSK	9	Unmodified	_SSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.2383117675781	2	485.239135	968.463718	-0.012379	-6.0067E-06	-0.68042	-0.00033016	-0.6928	-0.00033617	485.2389211734556	26.064	0.64389	26.064	25.87	26.514	0					54	21	4	0	0	0	0.11898	1	7839	7839		75.043	37.884	1	1710900			38702	1801	26436	26528	39178	39178					-0.02177567591161278
SSYPVCVSK	9	Unmodified	_SSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.23809814453125	2	485.239135	968.463718	-1.2369	-0.0006002	0.59732	0.00028984	-0.63959	-0.00031035	485.23954710823404	26.037	0.45345	26.037	25.93	26.383	0					40	14	4	0	0	0	0.38666	1	8116	8116		42.864	4.0581	1	811740			38703	1801	26436	26528	39179	39179					-0.02177567591161278
SSYPVCVSK	9	Unmodified	_SSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2389221191406	2	485.239135	968.463718	0.6552	0.00031793	-1.3631	-0.00066141	-0.70786	-0.00034348	485.23860113408887	26.317	0.91005	26.317	26.017	26.927	0					52	18	5	0	0	0	0.035106	1	9370	9370		104.01	48.509	1	7376500			38704	1801	26436	26528	39180	39180					-0.02177567591161278
SSYPVCVSK	9	Unmodified	_SSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.23956298828125	2	485.239135	968.463718	0.32941	0.00015984	-0.83032	-0.0004029	-0.50091	-0.00024306	485.2387709511309	26.101	0.52821	26.101	25.967	26.495	0					24	12	3	0	0	0	0.040209	1	8346	8346		99.013	44.237	1	690220			38705	1801	26436	26528	39181	39181					-0.02177567591161278
SSYPVCVSK	9	Unmodified	_SSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.23876953125	2	485.239135	968.463718	-0.25119	-0.00012189	-0.16282	-7.9005E-05	-0.414	-0.00020089	485.2391045929709	26.121	0.92814	26.121	25.95	26.878	0					43	21	4	0	0	0	0.10506	1	8337	8337		78.264	33.733	1	2038400			38706	1801	26436	26528	39182	39182					-0.02177567591161278
SSYPVCVSK	9	Unmodified	_SSYPVCVSK_					0	0	0		OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	OAS1|p.N280Tfs*8|1|0.07|ENSG00000089127|chr12:112916689-112916689|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2388916015625	2	485.239135	968.463718	-0.56784	-0.00027554	-0.29744	-0.00014433	-0.86527	-0.00041986	485.2391047515147	26.258	1.323	26.258	25.949	27.272	0					69	26	5	0	0	0	0.047855	1	9216	9216		96.034	51.917	1	5376700			38707	1801	26436	26528	39183	39183					-0.02177567591161278
SSYREAVFK	9	Unmodified	_SSYREAVFK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7830810546875	2	543.782556	1085.55056	1.8324	0.00099642	0.12479	6.7859E-05	1.9572	0.0010643	543.7827126439588	24.511	0.1812	24.511	24.421	24.602	0					11	4	3	0	0	0	0.13726	1	8252	8252		70.816	10.698	1	384330			38708	4272	26437	26529	39184	39184					0.01120554954900399
SSYREAVFK	9	Unmodified	_SSYREAVFK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7838745117188	2	543.782556	1085.55056	4.8069	0.0026139	-2.7613	-0.0015016	2.0456	0.0011123	543.781204429694	24.275	0.17446	24.275	24.189	24.364	0					8	5	2	0	0	0	0.47473	1	7397	7397		35.152	3.6222	1	65418			38709	4272	26437	26529	39185	39185					0.01120554954900399
SSYREAVFK	9	Unmodified	_SSYREAVFK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7830810546875	2	543.782556	1085.55056	1.0871	0.00059115	-0.25659	-0.00013953	0.83051	0.00045162	543.7823962826158	24.469	0.36845	24.469	24.36	24.729	0					14	7	3	0	0	0	0.095583	1	8576	8576		80.455	37.59	1	784090			38710	4272	26437	26529	39186	39186					0.01120554954900399
SSYREAVFK	9	Unmodified	_SSYREAVFK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.857421875	3	362.857463	1085.55056	1.1338	0.00041142	-1.1539	-0.00041869	-0.020028	-7.2674E-06	362.8570304585032	24.422	0.35893	24.422	24.364	24.723	0					13	7	2	0	0	0	0.44593	1	8438	8438		70.816	25.794	1	1085300			38711	4272	26437	26529	39187	39187					0.01120554954900399
SSYSQVRNK	9	Unmodified	_SSYSQVRNK_					0	0	0		nc|ENSG00000068878|Q14997-3|PSME4;PSME4|p.V1190Cfs*2|1|0.15|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant;nc|ENSG00000068878|Q14997-2|PSME4;ENSG00000068878|ENST00000404125|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7765502929688	2	534.775262	1067.53597	0.55613	0.00029741	0.21435	0.00011463	0.77048	0.00041204	534.7753124970335	14.922	0.078308	14.922	14.875	14.953	0					8	3	3	0	0	0	0.21263	1	3147	3147		60.118	1.8883	1	158510			38712	1428	26438	26530	39188	39188					0.004904828067765266
SSYSQVRNK	9	Unmodified	_SSYSQVRNK_					0	0	0		nc|ENSG00000068878|Q14997-3|PSME4;PSME4|p.V1190Cfs*2|1|0.15|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant;nc|ENSG00000068878|Q14997-2|PSME4;ENSG00000068878|ENST00000404125|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7761840820312	2	534.775262	1067.53597	0.16649	8.9035E-05	0.76407	0.00040861	0.93056	0.00049764	534.7756786450376	15.158	0.22649	15.158	15.101	15.328	0					11	5	3	0	0	0	0.012231	1	3859	3859		136.27	36.893	1	903160			38713	1428	26438	26530	39189	39189					0.004904828067765266
SSYSQVRNK	9	Unmodified	_SSYSQVRNK_					0	0	0		nc|ENSG00000068878|Q14997-3|PSME4;PSME4|p.V1190Cfs*2|1|0.15|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant;nc|ENSG00000068878|Q14997-2|PSME4;ENSG00000068878|ENST00000404125|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.775634765625	2	534.775262	1067.53597	0.16906	9.041E-05	0.82801	0.0004428	0.99708	0.00053321	534.7756021234092	14.923	0.10005	14.923	14.872	14.972	0					6	4	2	0	0	0	0.021961	1	3318	3318		118.74	39.292	1	144740			38714	1428	26438	26530	39190	39190					0.004904828067765266
SSYSQVRNK	9	Unmodified	_SSYSQVRNK_					0	0	0		nc|ENSG00000068878|Q14997-3|PSME4;PSME4|p.V1190Cfs*2|1|0.15|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant;nc|ENSG00000068878|Q14997-2|PSME4;ENSG00000068878|ENST00000404125|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	nc|ENSG00000068878|Q14997-3|PSME4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7757568359375	2	534.775262	1067.53597	0.29079	0.00015551	0.26924	0.00014398	0.56003	0.00029949	534.7753160290542	15.154	0.26047	15.154	15.062	15.322	0					13	5	4	0	0	0	0.01873	1	4084	4084		124.08	55.595	1	282280			38715	1428	26438	26530	39191	39191					0.004904828067765266
SSYVEYLVG	9	Unmodified	_SSYVEYLVG_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.5028991699219	3	339.502686	1015.48623	-0.052338	-1.7769E-05	0.75126	0.00025505	0.69892	0.00023729	339.50305695598064	12.191	0.058292	12.191	12.153	12.212	0					8	3	3	0	0	0	0.60749	1	2348	2348		20.947	0.95016	1	143770	+		38716	15549	26439	26531	39192	39192					-0.020896449218980706
SSYVSSTL	8	Unmodified	_SSYVSSTL_					0	0	0			REV__nc|ENSG00000049246|P56645|PER3	REV__nc|ENSG00000049246|P56645|PER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2090148925781	2	422.208358	842.402163	-1.2037	-0.00050823	3.0407	0.0012838	1.837	0.0007756	422.20986124563757	32.96	0.17769	32.96	32.878	33.056	0					11	7	2	0	0	0	0.60719	1	11040	11040		47.916	3.3845	1	88569	+		38717	13025	26440	26532	39193	39193					-0.025341760187870932
STAAATVLK	9	Unmodified	_STAAATVLK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2550964355469	2	431.255643	860.496732	0.19206	8.2829E-05	-0.33282	-0.00014353	-0.14076	-6.0701E-05	431.2556090566822	22.91	0.14032	22.91	22.817	22.958	0					6	3	2	0	0	0	0.063171	1	7502	7502		90.601	16.346	1	104180			38718	5260	26441	26533	39194	39194					0.06090382523188964
STAAATVLK	9	Unmodified	_STAAATVLK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.2551574707031	2	431.255643	860.496732	-0.49087	-0.00021169	-0.040715	-1.7559E-05	-0.53159	-0.00022925	431.2555178159675	22.768	0.11734	22.768	22.711	22.828	0					4	2	2	0	0	0	0.28897	1	7769	7769		51.193	3.5354	1	117170			38719	5260	26441	26533	39195	39195					0.06090382523188964
STAAFFLLR	9	Unmodified	_STAAFFLLR_					0	0	0		ENST00000532085.1_1_11:118895622-118896243:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF;nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4	ENST00000532085.1_1_11:118895622-118896243:-|nuORF	ENST00000532085.1_1_11:118895622-118896243:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2919311523438	2	513.292559	1024.57057	1.4451	0.00074175	-1.4332	-0.00073566	0.011865	6.0901E-06	513.291716870755	49.461	0.14685	49.461	49.411	49.557	0					9	6	2	0	0	0	0.0406	1	19557	19557		98.629	40.818	1	114490			38720	4185	26442	26534	39196	39196					0.05926350685513171
STAAISDSLR	10	Unmodified	_STAAISDSLR_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7738342285156	2	510.769645	1019.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.387	1	33.387	32.887	33.887	0								0	0	0	0.39665	1	12687	12687		31.53	1.2121	1		+		38721	13575	26443	26535	39197	39197					0.015756607126149902
STAALLFASSY	11	Unmodified	_STAALLFASSY_					0	0	0			REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant	REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.7897338867188	2	565.790047	1129.56554	0.74327	0.00042054	-1.1389	-0.00064436	-0.39559	-0.00022382	565.7891772566812	43.127	0.13683	43.127	43.035	43.171	0					5	3	2	0	0	0	0.65907	1	17261	17261		31.53	0	1	63614	+		38722	16383	26444	26536	39198	39198					0.005940020322441342
STAARVTVS	9	Unmodified	_STAARVTVS_					0	0	0			REV__ENST00000282570.3_1_2:70057088-70064689:+|nuORF	REV__ENST00000282570.3_1_2:70057088-70064689:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.247314453125	2	446.248349	890.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.796	1	18.796	18.296	19.296	0								0	0	0	0.34845	1	4977	4977		25.574	1.0549	1		+		38723	18136	26445	26537	39199	39199					0.03252310375046363
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.25823974609375	2	423.258185	844.501818	1.2497	0.00052896	-0.34667	-0.00014673	0.90306	0.00038223	423.25804150350666	25.007	0.14544	25.007	24.931	25.077	0					7	4	2	0	0	0	0.01768	1	7458	7458		125.81	53.937	1	183770			38724	1651	26446	26538	39200	39200					0.07334686385809164
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2580261230469	2	423.258185	844.501818	0.36031	0.0001525	-0.54441	-0.00023042	-0.1841	-7.7921E-05	423.25788941937395	25.353	0.49544	25.353	25.03	25.525	0					23	11	3	0	0	0	0.0033339	1	8641	8641		166.68	58.591	1	903520			38725	1651	26446	26538	39201	39201					0.07334686385809164
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2580261230469	2	423.258185	844.501818	-0.24651	-0.00010434	-0.18813	-7.9626E-05	-0.43464	-0.00018396	423.25807990927257	25.265	0.56347	25.265	25.056	25.62	0					21	11	4	0	0	0	0.0061615	1	8955	8955		153.04	62.259	1	2150000			38726	1651	26446	26538	39202	39202					0.07334686385809164
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.2584533691406	2	423.258185	844.501818	0.13788	5.8358E-05	0.4957	0.00020981	0.63357	0.00026817	423.258428473702	25.108	0.18627	25.108	25.012	25.198	0					11	4	3	0	0	0	0.0406	1	7941	7941		98.629	26.752	1	235420			38727	1651	26446	26538	39203	39203					0.07334686385809164
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.258056640625	2	423.258185	844.501818	-0.352	-0.00014899	0.0075706	3.2043E-06	-0.34443	-0.00014578	423.2582035740881	25.221	0.42056	25.221	25.11	25.531	0					19	8	4	0	0	0	0.021961	1	8836	8836		118.74	22.553	1	2676600			38728	1651	26446	26538	39204	39204					0.07334686385809164
STADGSALVK	10	Unmodified	_STADGSALVK_					0	0	0		ENST00000464235.5_1_13:37576413-37578626:+|nuORF;ENST00000490537.6_1_13:37574942-37577165:+|nuORF;EXOSC8|p.N162Mfs*9|1|0.25|ENSG00000120699|chr13:37007064-37007064|A/-|frameshift_variant;ENSG00000120699|ENST00000389704|EXOSC8	ENST00000464235.5_1_13:37576413-37578626:+|nuORF	ENST00000464235.5_1_13:37576413-37578626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.75372314453125	2	474.753464	947.492375	0.95116	0.00045156	-0.33684	-0.00015992	0.61431	0.00029165	474.7531392575357	21.514	0.075047	21.514	21.445	21.52	0					5	3	2	0	0	0	0.14151	1	5934	5934		88.177	35.24	1	50385			38729	3185	26447	26539	39205	39205					0.01652873309626557
STADGSALVK	10	Unmodified	_STADGSALVK_					0	0	0		ENST00000464235.5_1_13:37576413-37578626:+|nuORF;ENST00000490537.6_1_13:37574942-37577165:+|nuORF;EXOSC8|p.N162Mfs*9|1|0.25|ENSG00000120699|chr13:37007064-37007064|A/-|frameshift_variant;ENSG00000120699|ENST00000389704|EXOSC8	ENST00000464235.5_1_13:37576413-37578626:+|nuORF	ENST00000464235.5_1_13:37576413-37578626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.75323486328125	2	474.753464	947.492375	0.65649	0.00031167	-0.65062	-0.00030889	0.0058696	2.7866E-06	474.75316678613194	21.801	0.14784	21.801	21.75	21.898	0					6	3	2	0	0	0	0.018513	1	6993	6993		126.24	38.546	1	291950			38730	3185	26447	26539	39206	39206					0.01652873309626557
STADGSALVK	10	Unmodified	_STADGSALVK_					0	0	0		ENST00000464235.5_1_13:37576413-37578626:+|nuORF;ENST00000490537.6_1_13:37574942-37577165:+|nuORF;EXOSC8|p.N162Mfs*9|1|0.25|ENSG00000120699|chr13:37007064-37007064|A/-|frameshift_variant;ENSG00000120699|ENST00000389704|EXOSC8	ENST00000464235.5_1_13:37576413-37578626:+|nuORF	ENST00000464235.5_1_13:37576413-37578626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.75299072265625	2	474.753464	947.492375	-0.1204	-5.7158E-05	-1.9589	-0.00093001	-2.0793	-0.00098717	474.7524961521954	21.734	0.21638	21.734	21.625	21.842	0					11	4	3	0	0	0	0.14151	1	7260	7260		88.177	17.361	1	863520			38731	3185	26447	26539	39207	39207					0.01652873309626557
STADLIRCK	9	Carbamidomethyl (C)	_STADLIRC(Carbamidomethyl (C))K_	STADLIRC(1)K		STADLIRC(110)K		0	1	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.28271484375	2	532.281866	1062.54918	0.12544	6.6768E-05	-0.5259	-0.00027993	-0.40047	-0.00021316	532.2822992798197	23.084	0.13773	23.084	22.996	23.134	0					11	3	4	0	0	0	0.026538	1	7603	7603		112.41	48.877	1	743820			38732	923	26448	26540	39208	39208	29				0.02040597594486826
STADLIRCK	9	Carbamidomethyl (C)	_STADLIRC(Carbamidomethyl (C))K_	STADLIRC(1)K		STADLIRC(58)K		0	1	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2821655273438	2	532.281866	1062.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.885	1	22.885	22.385	23.385	0								0	0	0	0.15687	1	6893	6893		58.23	13.853	1				38733	923	26448	26540	39209	39209	29				0.02040597594486826
STADLIRCK	9	Unmodified	_STADLIRCK_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.77099609375	2	503.771134	1005.52771	-0.47995	-0.00024179	-0.02641	-1.3305E-05	-0.50636	-0.00025509	503.7712774170255	24.982	0.16658	24.982	24.873	25.04	0					6	3	2	0	0	0	0.07136	1	8820	8820		87.696	24.39	1	174000			38734	923	26448	26541	39210	39210					0.025172125657718425
STADYPLPL	9	Unmodified	_STADYPLPL_					0	0	0			REV__nc|ENSG00000148219|O75129-2|ASTN2	REV__nc|ENSG00000148219|O75129-2|ASTN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7508850097656	2	488.752933	975.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.862	1	26.862	26.362	27.362	0								0	0	0	0.23459	1	8494	8494		45.952	7.1458	1		+		38735	15375	26449	26542	39211	39211					0.002586589407201245
STAEESSPPK	10	Unmodified	_STAEESSPPK_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant;SETD2|p.R1407Gfs*5|1|0.18|ENSG00000181555|chr3:47120417-47120417|T/-|frameshift_variant;SETD2|p.N1396Mfs*16|1|0.42|ENSG00000181555|chr3:47120449-47120449|T/-|frameshift_variant;nc|ENSG00000181555|Q9BYW2-3|SETD2;SETD2|p.T1652Yfs*14|1|0.26|ENSG00000181555|chr3:47101519-47101520|-/A|frameshift_variant;nc|ENSG00000181555|Q9BYW2-2|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7465209960938	2	516.745836	1031.47712	1.2645	0.00065343	-1.0781	-0.0005571	0.18643	9.6336E-05	516.7453342831581	15.262	0.40016	15.262	14.98	15.38	0					18	9	3	0	0	0	0.065778	1	3892	3892		104.01	34.386	1	203640			38736	6856	26450	26543	39212	39212					-0.03736038278225351
STAEESSPPK	10	Unmodified	_STAEESSPPK_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant;SETD2|p.R1407Gfs*5|1|0.18|ENSG00000181555|chr3:47120417-47120417|T/-|frameshift_variant;SETD2|p.N1396Mfs*16|1|0.42|ENSG00000181555|chr3:47120449-47120449|T/-|frameshift_variant;nc|ENSG00000181555|Q9BYW2-3|SETD2;SETD2|p.T1652Yfs*14|1|0.26|ENSG00000181555|chr3:47101519-47101520|-/A|frameshift_variant;nc|ENSG00000181555|Q9BYW2-2|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.74560546875	2	516.745836	1031.47712	-0.010794	-5.5775E-06	0.64937	0.00033556	0.63858	0.00032998	516.7459641429994	14.975	0.15107	14.975	14.906	15.057	0					10	7	2	0	0	0	0.41384	1	3340	3340		54.722	15.47	1	57159			38737	6856	26450	26543	39213	39213					-0.03736038278225351
STAEESSPPK	10	Unmodified	_STAEESSPPK_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant;SETD2|p.R1407Gfs*5|1|0.18|ENSG00000181555|chr3:47120417-47120417|T/-|frameshift_variant;SETD2|p.N1396Mfs*16|1|0.42|ENSG00000181555|chr3:47120449-47120449|T/-|frameshift_variant;nc|ENSG00000181555|Q9BYW2-3|SETD2;SETD2|p.T1652Yfs*14|1|0.26|ENSG00000181555|chr3:47101519-47101520|-/A|frameshift_variant;nc|ENSG00000181555|Q9BYW2-2|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7470703125	2	516.745836	1031.47712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.035	1	15.035	14.535	15.535	0								0	0	0	0.3185	1	3294	3294		47.96	11.513	1				38738	6856	26450	26543	39214	39214					-0.03736038278225351
STAEESSPPK	10	Unmodified	_STAEESSPPK_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant;SETD2|p.R1407Gfs*5|1|0.18|ENSG00000181555|chr3:47120417-47120417|T/-|frameshift_variant;SETD2|p.N1396Mfs*16|1|0.42|ENSG00000181555|chr3:47120449-47120449|T/-|frameshift_variant;nc|ENSG00000181555|Q9BYW2-3|SETD2;SETD2|p.T1652Yfs*14|1|0.26|ENSG00000181555|chr3:47101519-47101520|-/A|frameshift_variant;nc|ENSG00000181555|Q9BYW2-2|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7464599609375	2	516.745836	1031.47712	1.5369	0.00079418	-1.1781	-0.00060876	0.35882	0.00018542	516.7452386798041	15.203	0.42021	15.203	14.894	15.314	0					18	8	3	0	0	0	0.014024	1	3948	3948		129.42	57.544	1	625730			38739	6856	26450	26543	39215	39215					-0.03736038278225351
STAERGMVK	9	Unmodified	_STAERGMVK_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7549743652344	2	489.755484	977.496415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.474	1	15.474	14.974	15.974	0								0	0	0	0.21054	1	3535	3535		49.442	1.5259	1				38740	3640	26451	26544	39216	39216					0.006766395316958551
STAGLIIGK	9	Unmodified	_STAGLIIGK_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1;ENSG00000104967|ENST00000263257|NOVA2	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2664489746094	2	430.26601	858.517468	-0.24567	-0.0001057	0.12479	5.3693E-05	-0.12088	-5.2009E-05	430.26607629839674	30.106	0.1759	30.106	30.017	30.193	0					9	6	2	0	0	0	0.33044	1	9549	9549		47.657	5.2612	1	80945			38741	4359	26452	26545	39217	39217					0.08254972902852842
STAGLIIGK	9	Unmodified	_STAGLIIGK_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1;ENSG00000104967|ENST00000263257|NOVA2	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2657775878906	2	430.26601	858.517468	-0.54665	-0.00023521	-0.099372	-4.2756E-05	-0.64603	-0.00027796	430.26600343078724	30.441	0.21477	30.441	30.311	30.526	0					12	5	3	0	0	0	0.055856	1	10964	10964		93.195	24.409	1	432230			38742	4359	26452	26545	39218	39218					0.08254972902852842
STAGLIIGK	9	Unmodified	_STAGLIIGK_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1;ENSG00000104967|ENST00000263257|NOVA2	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2657775878906	2	430.26601	858.517468	-0.872	-0.00037519	0.71981	0.00030971	-0.15219	-6.5483E-05	430.26628791311583	30.165	0.31831	30.165	30.074	30.393	0					17	11	2	0	0	0	0.25716	1	9869	9869		54.776	10.66	1	131980			38743	4359	26452	26545	39219	39219					0.08254972902852842
STAGLIIGK	9	Unmodified	_STAGLIIGK_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1;ENSG00000104967|ENST00000263257|NOVA2	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.265869140625	2	430.26601	858.517468	0.96603	0.00041565	-1.2155	-0.00052299	-0.24947	-0.00010734	430.26546516590673	30.408	0.47906	30.408	30.263	30.742	0					17	10	3	0	0	0	0.015338	1	11350	11350		129.68	30.308	1	948080			38744	4359	26452	26545	39220	39220					0.08254972902852842
STAGLIIGK	9	Unmodified	_STAGLIIGK_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1;ENSG00000104967|ENST00000263257|NOVA2	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2660827636719	2	430.26601	858.517468	-0.31582	-0.00013589	0.194	8.3473E-05	-0.12182	-5.2414E-05	430.26604462939923	30.179	0.24646	30.179	30.106	30.352	0					9	6	2	0	0	0	0.047412	1	10244	10244		96.19	27.404	1	148110			38745	4359	26452	26545	39221	39221					0.08254972902852842
STAGRVIGK	9	Unmodified	_STAGRVIGK_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000435000.2_1_1:146523764-146523956:+|nuORF;ENST00000464166.1_1_3:185364758-185367298:-|nuORF;ENST00000440915.1_1_8:100245318-100245837:-|nuORF;ENST00000550858.1_1_12:42681771-42682359:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.76654052734375	2	444.766709	887.518865	-0.38114	-0.00016952	-0.03797	-1.6888E-05	-0.41911	-0.00018641	444.76669167610606	16.776	0.20921	16.776	16.691	16.9	0					14	5	4	0	0	0	0.070005	1	4620	4620		88.177	16.299	1	3311400			38746	1516	26453	26546	39222	39222					0.07060606991615259
STAGRVIGK	9	Unmodified	_STAGRVIGK_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000435000.2_1_1:146523764-146523956:+|nuORF;ENST00000464166.1_1_3:185364758-185367298:-|nuORF;ENST00000440915.1_1_8:100245318-100245837:-|nuORF;ENST00000550858.1_1_12:42681771-42682359:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.76629638671875	2	444.766709	887.518865	0.55223	0.00024561	-1.5776	-0.00070168	-1.0254	-0.00045607	444.76605582865744	16.721	0.20541	16.721	16.613	16.818	0					11	4	3	0	0	0	0.070005	1	4846	4846		88.177	8.4643	1	3194200			38747	1516	26453	26546	39223	39223					0.07060606991615259
STAIFTCDL	9	Unmodified	_STAIFTCDL_					0	0	0		nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.G3063Rfs*5|1|0.06|ENSG00000164796|chr8:112287208-112287209|-/G|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3	nc|ENSG00000164796|Q7Z407-2|CSMD3	nc|ENSG00000164796|Q7Z407-2|CSMD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7314453125	2	485.731143	969.447733	-0.26782	-0.00013009	1.7018	0.0008266	1.4339	0.00069651	485.73162853709107	32.98	0.44585	32.98	32.854	33.3	0					24	12	4	0	0	0	0.13519	1	12163	12163		71.296	13.484	1	449630			38748	11620	26454	26547	39224	39224					-0.03821273828077665
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000518096.1_1_8:30210219-30210855:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7861328125	2	518.787307	1035.56006	1.3571	0.00070402	0.11885	6.1659E-05	1.4759	0.00076568	518.7874089993974	43.789	0.14192	43.789	43.713	43.855	0					13	7	2	0	0	0	0.19952	1	16474	16474		61.691	12.25	1	81998			38749	7342	26455	26548	39225	39225					0.04370323240414109
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000518096.1_1_8:30210219-30210855:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7877807617188	2	518.787307	1035.56006	0.14738	7.6459E-05	1.5436	0.00080081	1.691	0.00087727	519.2895830014936	43.515	0.12009	43.515	43.469	43.59	0					12	7	2	0	0	0	0.36135	1	14227	14227		45.022	6.2686	1	78140			38750	7342	26455	26548	39226	39226					0.04370323240414109
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000518096.1_1_8:30210219-30210855:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7880249023438	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.509	1	43.509	43.009	44.009	0								0	0	0	0.080575	1	15069	15069		77.318	16.346	1				38751	7342	26455	26548	39227	39227					0.04370323240414109
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000518096.1_1_8:30210219-30210855:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7882080078125	2	518.787307	1035.56006	-1.3906	-0.00072142	2.8362	0.0014714	1.4456	0.00074994	518.7888748796232	43.513	0.1415	43.513	43.477	43.618	0					12	8	2	0	0	0	0.14578	1	15072	15072		68.846	22.874	1	115210			38752	7342	26455	26548	39228	39228					0.04370323240414109
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000518096.1_1_8:30210219-30210855:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7877807617188	2	518.787307	1035.56006	1.5928	0.00082634	-0.89718	-0.00046544	0.69565	0.00036089	518.7867326334647	43.702	0.31731	43.702	43.591	43.909	0					24	9	4	0	0	0	0.0076184	1	17489	17489		146.79	59.089	1	846310			38753	7342	26455	26548	39229	39229					0.04370323240414109
STAIVSKQH	9	Unmodified	_STAIVSKQH_					0	0	0			REV__ENST00000426826.2_1_1:150026325-150026897:+|nuORF	REV__ENST00000426826.2_1_1:150026325-150026897:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7694396972656	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.853	1	33.853	33.353	34.353	0								0	0	0	0.27025	1	11387	11387		40.778	1.972	1		+		38754	19121	26456	26549	39230	39230					0.03836285783427229
STAKHSTTRG	10	Unmodified	_STAKHSTTRG_					0	0	0		SIPA1L1|p.A565T|1|0.21|ENSG00000197555|chr14:71624111-71624111|G/A|missense_variant	SIPA1L1|p.A565T|1|0.21|ENSG00000197555|chr14:71624111-71624111|G/A|missense_variant	SIPA1L1|p.A565T|1|0.21|ENSG00000197555|chr14:71624111-71624111|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7782592773438	2	523.272887	1044.53122	1.7925	0.00093795	1.1627	0.00060841	2.9552	0.0015464	523.2734833271646	36.247	0.72451	36.247	36.052	36.777	0					105	21	7	0	0	0	0.26198	1	14111	14111		71.877	13.096	1	48823000			38755	22397	26457	26550	39231	39231					0.010735986639929251
STAKHVFEK	9	Unmodified	_STAKHVFEK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.5259704589844	3	349.525825	1045.55564	0.17377	6.0738E-05	0.2866	0.00010017	0.46037	0.00016091	349.5257786982952	15.514	0.086468	15.514	15.462	15.548	0					5	3	2	0	0	0	0.18416	1	3390	3390		99.013	48.979	1	111760			38756	7017	26458	26551	39232	39232					0.03468858817518594
STAKHVFEK	9	Unmodified	_STAKHVFEK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.78564453125	2	523.785099	1045.55564	1.7493	0.00091626	-0.83698	-0.0004384	0.91233	0.00047787	523.7846824852479	15.816	0.25183	15.816	15.739	15.991	0					12	6	2	0	0	0	0.022525	1	4161	4161		117.81	46.515	1	1737600			38757	7017	26458	26551	39233	39233					0.03468858817518594
STAKHVFEK	9	Unmodified	_STAKHVFEK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.5258483886719	3	349.525825	1045.55564	0.49776	0.00017398	-0.43741	-0.00015289	0.060348	2.1093E-05	349.52562056484254	15.81	0.25317	15.81	15.726	15.979	0					15	6	3	0	0	0	0.18416	1	4166	4166		89.029	89.029	1	1784900			38758	7017	26458	26551	39234	39234					0.03468858817518594
STAKHVFEK	9	Unmodified	_STAKHVFEK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.78515625	2	523.785099	1045.55564	0.51548	0.00027	0.35882	0.00018794	0.8743	0.00045795	523.7851847017487	15.584	0.087635	15.584	15.523	15.61	0					6	3	2	0	0	0	0.063171	1	3588	3588		90.601	19.305	1	56520			38759	7017	26458	26551	39235	39235					0.03468858817518594
STAKHVFEK	9	Unmodified	_STAKHVFEK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7864990234375	2	523.785099	1045.55564	1.1207	0.00058701	0.9776	0.00051205	2.0983	0.0010991	523.7857284029662	15.6	0.12191	15.6	15.535	15.657	0					7	4	2	0	0	0	0.070005	1	3530	3530		88.177	5.9364	1	153980			38760	7017	26458	26551	39236	39236					0.03468858817518594
STAKHVFEK	9	Unmodified	_STAKHVFEK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.5259704589844	3	349.525825	1045.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.602	1	15.602	15.102	16.102	0								0	0	0	0.14033	1	3535	3535		88.177	43.8	1				38761	7017	26458	26551	39237	39237					0.03468858817518594
STAKHVFEK	9	Unmodified	_STAKHVFEK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.785400390625	2	523.785099	1045.55564	1.6259	0.0008516	-1.1016	-0.00057702	0.52422	0.00027458	523.7845016825007	15.818	0.31599	15.818	15.731	16.047	0					11	6	3	0	0	0	0.021015	1	4251	4251		120.31	50.678	1	818410			38762	7017	26458	26551	39238	39238					0.03468858817518594
STAKRTLSK	9	Unmodified	_STAKRTLSK_					0	0	0		ENST00000491827.1_1_3:142733158-142735829:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;U2SURP|p.S934Afs*11|1|0.34|ENSG00000163714|chr3:143054963-143054963|C/-|frameshift_variant;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	ENST00000491827.1_1_3:142733158-142735829:+|nuORF	ENST00000491827.1_1_3:142733158-142735829:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.29791259765625	2	496.298373	990.582193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.697	1	12.697	12.197	13.197	0								0	0	0	0.13425	1	2765	2765		63.534	19.417	1				38763	5601	26459	26552	39239	39239					0.08652547708868497
STAKSLLVK	9	Unmodified	_STAKSLLVK_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.8002014160156	2	473.800217	945.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.207	1	21.207	20.707	21.707	0								0	0	0	0.19847	1	5806	5806		51.193	3.5354	1				38764	4100	26460	26553	39240	39240					0.11091217482726279
STAKSLLVK	9	Unmodified	_STAKSLLVK_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7999267578125	2	473.800217	945.585882	0.69371	0.00032868	-1.9126	-0.00090619	-1.2189	-0.00057751	473.79924759472004	21.541	0.19274	21.541	21.404	21.596	0					7	4	2	0	0	0	0.10506	1	6870	6870		78.264	18.146	1	354810			38765	4100	26460	26553	39241	39241					0.11091217482726279
STAKSQFLK	9	Unmodified	_STAKSQFLK_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.28717041015625	2	505.287474	1008.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.637	1	19.637	19.137	20.137	0								0	0	0	0.17415	1	5117	5117		54.722	7.065	1				38766	1553	26461	26554	39242	39242					0.05645742960280131
STAKSQFLK	9	Unmodified	_STAKSQFLK_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.287353515625	2	505.287474	1008.5604	0.71473	0.00036115	-0.82803	-0.00041839	-0.11329	-5.7246E-05	505.28707816825096	19.946	0.11935	19.946	19.886	20.005	0					6	2	3	0	0	0	0.003936	1	6117	6117		163.15	69.955	1	943490			38767	1553	26461	26554	39243	39243					0.05645742960280131
STAKSQFLK	9	Unmodified	_STAKSQFLK_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2873229980469	2	505.287474	1008.5604	0.11969	6.0476E-05	-0.33233	-0.00016792	-0.21265	-0.00010745	505.2872921532053	19.834	0.16957	19.834	19.775	19.944	0					7	3	3	0	0	0	0.014413	1	6346	6346		131.62	46.455	1	908370			38768	1553	26461	26554	39244	39244					0.05645742960280131
STAKWAPQ	8	Unmodified	_STAKWAPQ_					0	0	0			REV__ENSG00000196912|ENST00000359901|ANKRD36B	REV__ENSG00000196912|ENST00000359901|ANKRD36B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7319641113281	2	444.732335	887.450116	0.5504	0.00024478	-1.389	-0.00061774	-0.83863	-0.00037297	444.7315663368196	25.197	0.36974	25.197	25.089	25.459	0					9	7	2	0	0	0	0.58597	1	8925	8925		51.335	1.3109	1	1136400	+		38769	17291	26462	26555	39245	39245					0.0018894269189786428
STALALVGK	9	Unmodified	_STALALVGK_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;ABCA13|p.K4864Q|1|0.31|ENSG00000179869|chr7:48587238-48587238|A/C|missense_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.26593017578125	2	430.26601	858.517468	-0.44859	-0.00019301	0.26526	0.00011413	-0.18333	-7.888E-05	430.26620684927764	30.351	0.16316	30.351	30.245	30.408	0					5	3	2	0	0	0	0.37197	1	11240	11240		44.117	0	1	146510			38770	6783	26463	26556	39246	39246					0.0825497290286421
STALPGRTPRP	11	Unmodified	_STALPGRTPRP_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	384.8878173828125	3	384.887645	1151.64111	-1.1672	-0.00044925	1.4531	0.0005593	0.28593	0.00011005	384.8882319046052	15.693	0.078476	15.693	15.646	15.725	0					5	3	2	0	0	0	0.6208	1	3628	3628		35.178	4.6094	1	73782	+		38771	21113	26464	26557	39247	39247					0.07135024003173385
STALPGRTPRP	11	Unmodified	_STALPGRTPRP_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.8877258300781	3	384.887645	1151.64111	0.57583	0.00022163	-0.7969	-0.00030672	-0.22107	-8.5088E-05	384.8874451706287	15.939	0.1651	15.939	15.832	15.997	0					9	3	4	0	0	0	0.52595	1	4302	4302		42.338	7.1861	1	1077600	+		38772	21113	26464	26557	39248	39248					0.07135024003173385
STALTVTSVR	10	Unmodified	_STALTVTSVR_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;ENST00000497872.3_1_14:106170727-106170913:-|nuORF;nc|ENSG00000211895|P01876|IGHA1	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.795654296875	2	517.795663	1033.57677	1.5616	0.00080857	-1.6621	-0.00086065	-0.10057	-5.2077E-05	517.794825412869	20.184	0.26745	20.184	20.077	20.344	0					7	5	2	0	0	0	0.35046	1	6382	6382		61.691	2.9093	1	721680			38773	11747	26465	26558	39249	39249					0.06132824126370906
STALVVPSLS	10	Unmodified	_STALVVPSLS_					0	0	0		ENST00000508941.5_1_5:35852875-35853016:+|nuORF	ENST00000508941.5_1_5:35852875-35853016:+|nuORF	ENST00000508941.5_1_5:35852875-35853016:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2814636230469	2	487.281857	972.549162	-0.33482	-0.00016315	-0.81247	-0.0003959	-1.1473	-0.00055906	487.2813301355149	33.451	0.40909	33.451	33.288	33.698	0					26	10	3	0	0	0	0.49411	1	12378	12378		45.972	5.1941	1	519730			38774	10217	26466	26559	39250	39250					0.06178920866148019
STAMNGNLAK	10	Unmodified	_STAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7538146972656	2	503.752941	1005.49133	0.60965	0.00030711	-0.10073	-5.0743E-05	0.50892	0.00025637	503.75310295198943	20.242	0.18679	20.242	20.168	20.355	0					11	6	3	0	0	0	0.2538	1	5392	5392		72.879	23.343	1	174630			38775	7030	26467	26560	39251	39251					-0.011196643309290266
STAMNGNLAK	10	Unmodified	_STAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.75286865234375	2	503.752941	1005.49133	0.75729	0.00038149	-1.2732	-0.00064137	-0.5159	-0.00025989	503.7524043613061	20.569	0.28081	20.569	20.433	20.714	0					15	6	4	0	0	0	0.014024	1	6412	6412		129.42	41.667	1	1646800			38776	7030	26467	26560	39252	39252					-0.011196643309290266
STAMNGNLAK	10	Unmodified	_STAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7528381347656	2	503.752941	1005.49133	1.0177	0.00051266	-1.859	-0.0009365	-0.84136	-0.00042384	503.75231065395906	20.47	0.41689	20.47	20.212	20.629	0					22	8	4	0	0	0	0.029105	1	6651	6651		118.74	44.488	1	1438600			38777	7030	26467	26560	39253	39253					-0.011196643309290266
STAMNGNLAK	10	Unmodified	_STAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.75274658203125	2	503.752941	1005.49133	-0.096265	-4.8494E-05	-0.12033	-6.0617E-05	-0.2166	-0.00010911	503.7529865202569	20.332	0.14885	20.332	20.234	20.383	0					5	3	2	0	0	0	0.14426	1	5687	5687		87.696	2.7809	1	98322			38778	7030	26467	26560	39254	39254					-0.011196643309290266
STAMNGNLAK	10	Unmodified	_STAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7534484863281	2	503.752941	1005.49133	0.12515	6.3046E-05	0.4962	0.00024996	0.62136	0.00031301	503.75324156446453	20.316	0.18657	20.316	20.22	20.407	0					9	4	3	0	0	0	0.2538	1	5698	5698		72.879	23.438	1	235140			38779	7030	26467	26560	39255	39255					-0.011196643309290266
STAMNGNLAK	10	Unmodified	_STAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7530212402344	2	503.752941	1005.49133	-0.41953	-0.00021134	-0.37664	-0.00018973	-0.79617	-0.00040107	503.7529743713422	20.503	0.16612	20.503	20.394	20.56	0					8	3	3	0	0	0	0.0093795	1	6509	6509		145.16	35.036	1	1201300			38780	7030	26467	26560	39256	39256					-0.011196643309290266
STAMNGNLAK	10	Unmodified	_STAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7528076171875	2	503.752941	1005.49133	1.1877	0.00059832	-1.7772	-0.00089529	-0.58952	-0.00029697	503.7521645192793	20.486	0.41605	20.486	20.226	20.642	0					15	8	3	0	0	0	0.04084	1	6523	6523		112.41	32.698	1	2197900			38781	7030	26467	26560	39257	39257					-0.011196643309290266
STANIDDLKK	10	Unmodified	_STANIDDLKK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8681640625	3	368.868027	1103.58225	0.76634	0.00028268	-1.2308	-0.00045399	-0.46442	-0.00017131	368.8677470343807	21.993	0.12918	21.993	21.96	22.089	0					7	3	3	0	0	0	0.52275	1	7088	7088		55.084	9.132	1	449130			38782	6541	26468	26561	39258	39258					0.03460502918187558
STANIDDLKK	10	Unmodified	_STANIDDLKK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7986450195312	2	552.798403	1103.58225	-0.38544	-0.00021307	1.2857	0.00071071	0.90022	0.00049764	552.7991027131548	21.712	0.15657	21.712	21.624	21.781	0					6	4	2	0	0	0	0.50287	1	6279	6279		45.022	10.85	1	64002			38783	6541	26468	26561	39259	39259					0.03460502918187558
STANTYSYHK	10	Unmodified	_STANTYSYHK_					0	0	0		ENST00000565302.5_1_16:732919-733769:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF;ENST00000568689.5_1_16:733170-734340:-|nuORF;nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8	ENST00000565302.5_1_16:732919-733769:-|nuORF	ENST00000565302.5_1_16:732919-733769:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.2727661132812	2	586.272552	1170.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.351	1	17.351	16.851	17.851	0								0	0	0	0.38879	1	4307	4307		33.922	4.7516	1				38784	5435	26469	26562	39260	39260					-0.047892407756989996
STANYDFVLK	10	Unmodified	_STANYDFVLK_					0	0	0		nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;ENST00000493438.5_1_9:135973976-135976008:-|nuORF	nc|ENSG00000160271|Q12967-3|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.295166015625	2	579.295496	1156.57644	1.4444	0.00083672	-1.0012	-0.00058001	0.44314	0.00025671	579.2950763294687	39.364	0.15975	39.364	39.282	39.442	0					9	5	2	0	0	0	0.39647	1	14986	14986		56.632	13.768	1	50924			38785	5353	26470	26563	39261	39261					0.004414044065015332
STANYDFVLK	10	Unmodified	_STANYDFVLK_					0	0	0		nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;ENST00000493438.5_1_9:135973976-135976008:-|nuORF	nc|ENSG00000160271|Q12967-3|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.2962646484375	2	579.295496	1156.57644	0.13706	7.94E-05	0.39686	0.0002299	0.53392	0.0003093	579.2957563153358	39.309	0.19052	39.309	39.214	39.404	0					6	4	2	0	0	0	0.12383	1	15513	15513		91.265	46.888	1	106670			38786	5353	26470	26563	39262	39262					0.004414044065015332
STAPAQLGK	9	Unmodified	_STAPAQLGK_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.74530029296875	2	436.745442	871.476331	-0.41403	-0.00018082	0.31305	0.00013672	-0.10098	-4.4102E-05	436.7455626620375	19.14	0.26312	19.14	19.034	19.297	0					10	5	3	0	0	0	0.056004	1	5990	5990		93.143	10.903	1	484240			38787	4647	26471	26564	39263	39263					0.03545211863388431
STAPQKLSQP	10	Unmodified	_STAPQKLSQP_					0	0	0			REV__ATF2|p.Q316K|1|0.04|ENSG00000115966|chr2:175097476-175097476|G/T|missense_variant	REV__ATF2|p.Q316K|1|0.04|ENSG00000115966|chr2:175097476-175097476|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.86224365234375	3	352.860984	1055.56112	0.7064	0.00024926	3.6296	0.0012808	4.336	0.00153	352.8622717863289	31.796	0.17479	31.796	31.696	31.871	0					6	4	2	0	0	0	0.63224	1	11622	11622		28.577	0	1	81659	+		38788	12242	26472	26565	39264	39264					0.03556537609347288
STAQKAIGK	9	Unmodified	_STAQKAIGK_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.26715087890625	2	452.266542	902.51853	-1.1937	-0.00053986	1.4025	0.00063432	0.20885	9.4456E-05	452.26735850040416	13.697	0.060748	13.697	13.657	13.718	0					5	3	2	0	0	0	0.28504	1	2849	2849		51.528	2.0862	1	85973			38789	844	26473	26566	39265	39265					0.06337187271753919
STAQKAIGK	9	Unmodified	_STAQKAIGK_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2662658691406	2	452.266542	902.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.95	1	13.95	13.45	14.45	0								0	0	0	0.024296	1	3513	3513		98.582	10.886	1				38790	844	26473	26566	39266	39266					0.06337187271753919
STAQKAIGK	9	Unmodified	_STAQKAIGK_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2666320800781	2	452.266542	902.51853	-0.066512	-3.0081E-05	0.68091	0.00030795	0.61439	0.00027787	452.266854843173	13.708	0.082627	13.708	13.669	13.751	0					7	4	2	0	0	0	0.10506	1	2797	2797		78.264	10.77	1	69345			38791	844	26473	26566	39267	39267					0.06337187271753919
STAQKAIGK	9	Unmodified	_STAQKAIGK_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2662048339844	2	452.266542	902.51853	0.87682	0.00039656	-1.531	-0.00069244	-0.65422	-0.00029588	452.2657792242799	13.906	0.16075	13.906	13.8	13.961	0					7	3	3	0	0	0	0.015496	1	3350	3350		129.42	22.414	1	1047300			38792	844	26473	26566	39268	39268					0.06337187271753919
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2877807617188	2	527.288005	1052.56146	1.2833	0.00067665	-0.18853	-9.9411E-05	1.0947	0.00057724	527.2877872652432	16.256	0.13285	16.256	16.196	16.329	0					14	6	3	0	0	0	0.02429	1	3660	3660		114.89	37.577	1	288890			38793	3466	26474	26567	39269	39269					0.03727957329192577
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2881469726562	2	527.288005	1052.56146	2.1147	0.0011151	-1.5272	-0.00080526	0.58753	0.0003098	527.2870585727017	16.533	0.38523	16.533	16.407	16.792	0					24	9	5	0	0	0	0.017421	1	4491	4491		126.24	51.988	1	2823400			38794	3466	26474	26567	39270	39270					0.03727957329192577
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2883911132812	2	527.288005	1052.56146	0.94178	0.00049659	-0.22908	-0.00012079	0.71269	0.0003758	527.2879596942886	16.489	0.21637	16.489	16.38	16.596	0					10	4	3	0	0	0	0.014413	1	4732	4732		131.62	59.739	1	1150100			38795	3466	26474	26567	39271	39271					0.03727957329192577
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.289306640625	2	527.288005	1052.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.293	1	16.293	15.793	16.793	0								0	0	0	0.058887	1	3832	3832		83.647	28.871	1				38796	3466	26474	26567	39272	39272					0.03727957329192577
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.28857421875	2	527.288005	1052.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.319	1	16.319	15.819	16.819	0								0	0	0	0.11159	1	3844	3844		68.846	10.064	1				38797	3466	26474	26567	39273	39273					0.03727957329192577
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2882690429688	2	527.288005	1052.56146	0.65057	0.00034304	-0.16275	-8.5818E-05	0.48781	0.00025722	527.2878799049587	16.506	0.2649	16.506	16.401	16.666	0					9	5	2	0	0	0	0.0047071	1	4569	4569		159.28	74.36	1	1984000			38798	3466	26474	26567	39274	39274					0.03727957329192577
STAREAIEK	9	Unmodified	_STAREAIEK_					0	0	0		ENST00000547374.5_1_14:105678371-105685686:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1	ENST00000547374.5_1_14:105678371-105685686:-|nuORF	ENST00000547374.5_1_14:105678371-105685686:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7727355957031	2	502.772188	1003.52982	0.061345	3.0842E-05	1.0497	0.00052774	1.111	0.00055858	502.7726702458957	16.088	0.11577	16.088	16.03	16.145	0					4	2	2	0	0	0	0.11411	1	4539	4539		76.17	6.5421	1	174380			38799	7056	26475	26568	39275	39275					0.028199645752465585
STARHLYLR	9	Unmodified	_STARHLYLR_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.21514892578125	3	372.880602	1115.61998	-1.0489	-0.00039112	0.81994	0.00030574	-0.22897	-8.5379E-05	372.8808453820616	20.125	0.34123	20.125	20.031	20.372	0					16	11	3	0	0	0	0.42902	1	5559	5559		72.879	9.3454	1	202210			38800	2349	26476	26569	39276	39276					0.06679058694317064
STARHLYLR	9	Unmodified	_STARHLYLR_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.8806457519531	3	372.880602	1115.61998	-0.11983	-4.4683E-05	0.12232	4.5611E-05	0.0024877	9.2761E-07	372.8806290416833	20.181	0.23695	20.181	20.087	20.324	0					10	5	3	0	0	0	0.42902	1	5636	5636		54.722	29.596	1	250910			38801	2349	26476	26569	39277	39277					0.06679058694317064
STARLWDHKK	10	Unmodified	_STARLWDHKK_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.8970031738281	3	414.563161	1240.66765	0.57984	0.00024038	-0.71381	-0.00029592	-0.13397	-5.5539E-05	414.56289301438363	17.79	0.2397	17.79	17.731	17.971	0					11	6	2	0	0	0	0.59255	1	4313	4313		35.178	2.4277	1	116660			38802	10419	26477	26570	39278	39278					0.05694712894501208
STARLWDHKK	10	Unmodified	_STARLWDHKK_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	621.3413696289062	2	621.341104	1240.66765	0.23247	0.00014445	0.13373	8.3091E-05	0.3662	0.00022754	621.3412140664162	18.076	0.40996	18.076	17.975	18.385	0					15	9	2	0	0	0	0.13022	1	5232	5232		78.264	25.327	1	732600			38803	10419	26477	26570	39279	39279					0.05694712894501208
STARLWDHKK	10	Unmodified	_STARLWDHKK_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.5630798339844	3	414.563161	1240.66765	0.063415	2.629E-05	-0.17087	-7.0836E-05	-0.10745	-4.4546E-05	414.5630819542257	18.064	0.5726	18.064	17.955	18.527	0					20	11	3	0	0	0	0.21577	1	5490	5490		77.533	33.882	1	695170			38804	10419	26477	26570	39280	39280					0.05694712894501208
STARLWDHKK	10	Unmodified	_STARLWDHKK_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.56341552734375	3	414.563161	1240.66765	0.09324	3.8654E-05	-0.18177	-7.5356E-05	-0.088533	-3.6703E-05	414.5630674971922	17.884	0.23969	17.884	17.794	18.034	0					8	5	2	0	0	0	0.48255	1	4566	4566		47.228	8.4741	1	88874			38805	10419	26477	26570	39281	39281					0.05694712894501208
STARLWDHKK	10	Unmodified	_STARLWDHKK_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.5630798339844	3	414.563161	1240.66765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.897	1	17.897	17.397	18.397	0								0	0	0	0.32313	1	4560	4560		47.228	13.306	1				38806	10419	26477	26570	39282	39282					0.05694712894501208
STARLWDHKK	10	Unmodified	_STARLWDHKK_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.56304931640625	3	414.563161	1240.66765	-0.382	-0.00015836	0.059183	2.4535E-05	-0.32282	-0.00013383	414.5632206332571	18.083	0.7072	18.083	17.978	18.685	0					24	14	2	0	0	0	0.33468	1	5329	5329		63.426	22	1	1212200			38807	10419	26477	26570	39283	39283					0.05694712894501208
STASAVPLAK	10	Unmodified	_STASAVPLAK_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2;HMGCS2|p.I277Sfs*22|1|0.26|ENSG00000134240|chr1:119759139-119759139|T/-|frameshift_variant	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.77423095703125	2	472.7742	943.533846	0.91974	0.00043483	-1.2888	-0.00060929	-0.36902	-0.00017446	472.7734603900843	23.316	0.16518	23.316	23.232	23.397	0					6	4	2	0	0	0	0.029105	1	6739	6739		118.74	39.03	1	67664			38808	3898	26478	26571	39284	39284					0.059820540689429436
STASAVPLAK	10	Unmodified	_STASAVPLAK_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2;HMGCS2|p.I277Sfs*22|1|0.26|ENSG00000134240|chr1:119759139-119759139|T/-|frameshift_variant	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7740783691406	2	472.7742	943.533846	0.6526	0.00030853	-1.1904	-0.00056279	-0.5378	-0.00025426	472.7736620253083	23.67	0.18268	23.67	23.538	23.721	0					9	4	3	0	0	0	0.011271	1	7857	7857		138.06	47.693	1	570850			38809	3898	26478	26571	39285	39285					0.059820540689429436
STASAVPLAK	10	Unmodified	_STASAVPLAK_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2;HMGCS2|p.I277Sfs*22|1|0.26|ENSG00000134240|chr1:119759139-119759139|T/-|frameshift_variant	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7737121582031	2	472.7742	943.533846	-0.12264	-5.7981E-05	-0.90377	-0.00042728	-1.0264	-0.00048526	472.77378452294283	23.57	0.21536	23.57	23.513	23.728	0					6	4	2	0	0	0	0.12763	1	8151	8151		90.601	30.483	1	212930			38810	3898	26478	26571	39286	39286					0.059820540689429436
STASEETVQNR	11	Unmodified	_STASEETVQNR_					0	0	0		nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62;ENST00000608676.1_1_19:36545867-36550933:+|nuORF	nc|ENSG00000075702|O43379|WDR62	nc|ENSG00000075702|O43379|WDR62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.289794921875	2	611.288931	1220.56331	-0.63098	-0.00038571	1.9696	0.001204	1.3386	0.00081829	611.2898201609341	17.392	0.053688	17.392	17.365	17.418	0					4	2	2	0	0	0	0.26131	1	4357	4357		66.962	20.99	1	39387			38811	1546	26479	26572	39287	39287					-0.0381507844351745
STASFIFSK	9	Unmodified	_STASFIFSK_					0	0	0		nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	nc|ENSG00000162522|Q9P206|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2606506347656	2	494.260925	986.507297	0.76088	0.00037607	-1.3879	-0.00068601	-0.62707	-0.00030993	494.2603557059046	38.012	0.17531	38.012	37.928	38.103	0					12	8	2	0	0	0	0.063171	1	14431	14431		90.601	44.649	1	169750			38812	5468	26480	26573	39288	39288					0.013503651776318293
STASFIFSK	9	Unmodified	_STASFIFSK_					0	0	0		nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	nc|ENSG00000162522|Q9P206|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2604064941406	2	494.260925	986.507297	-0.63305	-0.00031289	0.40433	0.00019984	-0.22872	-0.00011305	494.26101887297057	37.912	0.25162	37.912	37.804	38.055	0					9	5	2	0	0	0	0.1424	1	14850	14850		69.628	8.6557	1	140920			38813	5468	26480	26573	39289	39289					0.013503651776318293
STASFIFSK	9	Unmodified	_STASFIFSK_					0	0	0		nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	nc|ENSG00000162522|Q9P206|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2607727050781	2	494.260925	986.507297	0.89698	0.00044334	-0.67589	-0.00033407	0.22108	0.00010927	494.26061952911516	37.895	0.25209	37.895	37.787	38.039	0					9	5	2	0	0	0	0.10915	1	14869	14869		77.318	16.346	1	255760			38814	5468	26480	26573	39290	39290					0.013503651776318293
STASFSAVK	9	Unmodified	_STASFSAVK_					0	0	0		nc|ENSG00000012211|O43900-2|PRICKLE3;ENSG00000012211|ENST00000599218|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.2372741699219	2	449.23745	896.460347	-0.093496	-4.2002E-05	0.21284	9.5615E-05	0.11934	5.3613E-05	449.2374950783344	23.671	0.31881	23.671	23.562	23.881	0					13	6	3	0	0	0	0.19605	1	8198	8198		62.107	1.9892	1	364470			38815	1056	26481	26574	39291	39291					0.007975056264854175
STASFSAVK	9	Unmodified	_STASFSAVK_					0	0	0		nc|ENSG00000012211|O43900-2|PRICKLE3;ENSG00000012211|ENST00000599218|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.2371826171875	2	449.23745	896.460347	-0.39653	-0.00017814	0.80544	0.00036183	0.40891	0.0001837	449.23762520842087	23.673	0.26119	23.673	23.585	23.846	0					13	5	3	0	0	0	0.1424	1	8058	8058		69.628	12.907	1	243380			38816	1056	26481	26574	39292	39292					0.007975056264854175
STASFSLSPF	10	Unmodified	_STASFSLSPF_					0	0	0		nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2567749023438	2	522.25584	1042.49713	1.0731	0.00056042	1.2949	0.00067624	2.3679	0.0012367	522.2562552904051	28.299	0.3078	28.299	28.145	28.453	0					12	7	2	0	0	0	0.65213	1	9362	9362		27.882	1.1893	1	53680			38817	6958	26482	26575	39293	39293					-0.022422425476179342
STASITLSSL	10	Unmodified	_STASITLSSL_					0	0	0			REV__ENST00000409260.5_1_2:220110626-220111251:+|nuORF	REV__ENST00000409260.5_1_2:220110626-220111251:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2684326171875	2	490.268947	978.523341	2.6559	0.0013021	-2.8669	-0.0014056	-0.21101	-0.00010345	490.26740379464013	41.771	0.18314	41.771	41.665	41.848	0					8	5	2	0	0	0	0.47859	1	16639	16639		47.657	1.6851	1	103900	+		38818	18994	26483	26576	39294	39294					0.033220266238686236
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2386474609375	2	513.239667	1024.46478	-0.014042	-7.2068E-06	0.089788	4.6083E-05	0.075746	3.8876E-05	513.2397485165509	27.207	0.23439	27.207	27.118	27.352	0					25	9	4	0	0	0	0.28675	1	8342	8342		68.846	33.228	1	406300			38819	5890	26484	26577	39295	39295					-0.04647353222264883
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2396240234375	2	513.239667	1024.46478	0.013361	6.8574E-06	-0.34623	-0.0001777	-0.33287	-0.00017084	513.2396535141637	27.458	0.47114	27.458	27.321	27.792	0					28	11	4	0	0	0	0.01518	1	9580	9580		128.6	69.82	1	2101400			38820	5890	26484	26577	39296	39296					-0.04647353222264883
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2403564453125	2	513.239667	1024.46478	-0.25367	-0.00013019	0.78337	0.00040206	0.5297	0.00027187	513.2401761708637	27.221	0.28784	27.221	27.131	27.418	0					23	10	3	0	0	0	0.073361	1	8647	8647		101.46	43.23	1	318100			38821	5890	26484	26577	39297	39297					-0.04647353222264883
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.239501953125	2	513.239667	1024.46478	1.2969	0.00066562	-1.4582	-0.00074842	-0.16132	-8.2795E-05	513.2390314122786	27.455	0.70873	27.455	27.055	27.764	0					27	14	3	0	0	0	0.010919	1	9963	9963		139.38	63.212	1	2369900			38822	5890	26484	26577	39298	39298					-0.04647353222264883
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2398071289062	2	513.239667	1024.46478	-0.46639	-0.00023937	-0.024486	-1.2567E-05	-0.49088	-0.00025194	513.2391617321434	27.447	0.30838	27.447	27.389	27.697	0					8	6	2	0	0	0	0.31894	1	9956	9956		65.157	15.716	1	153630			38823	5890	26484	26577	39299	39299					-0.04647353222264883
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2395629882812	2	513.239667	1024.46478	0.52553	0.00026972	0.3666	0.00018815	0.89213	0.00045788	513.239872043447	27.301	0.18048	27.301	27.164	27.345	0					7	4	2	0	0	0	0.38179	1	8905	8905		58.246	20.738	1	215310			38824	5890	26484	26577	39300	39300					-0.04647353222264883
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2407836914062	2	513.239667	1024.46478	-1.6634	-0.0008537	2.5397	0.0013035	0.87631	0.00044976	513.2409311152455	27.303	0.29901	27.303	27.195	27.494	0					11	7	2	0	0	0	0.13663	1	8895	8895		89.029	23.226	1	440020			38825	5890	26484	26577	39301	39301					-0.04647353222264883
STASMGGWTK	10	Unmodified	_STASMGGWTK_					0	0	0		USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2398681640625	2	513.239667	1024.46478	1.4473	0.00074279	-1.2667	-0.00065011	0.18058	9.2682E-05	513.2391105753405	27.42	0.6262	27.42	27.137	27.763	0					23	12	3	0	0	0	0.012989	1	9816	9816		131.62	67.409	1	926880			38826	5890	26484	26577	39302	39302					-0.04647353222264883
STASMVSSS	9	Unmodified	_STASMVSSS_					0	0	0		CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant;CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.6907958984375	2	428.689475	855.364398	1.0401	0.00044588	0.78694	0.00033735	1.827	0.00078323	428.69036143432083	49.92	0.50085	49.92	49.696	50.197	0					90	22	5	0	0	0	0.57706	1	19785	19785		24.203	4.8428	1	2036000			38827	555	26485	26578	39303	39303					-0.06907010275904213
STASSKSEGL	10	Unmodified	_STASSKSEGL_					0	0	0		CA12|p.N162S|1|0.34|ENSG00000074410|chr15:63342042-63342042|T/C|missense_variant	CA12|p.N162S|1|0.34|ENSG00000074410|chr15:63342042-63342042|T/C|missense_variant	CA12|p.N162S|1|0.34|ENSG00000074410|chr15:63342042-63342042|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.740478515625	2	483.740554	965.466554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.437	1	15.437	14.937	15.937	0								0	0	0	0.27575	1	3464	3464		54.722	1.3709	1				38828	339	26486	26579	39304	39304					-0.01756020932634783
STASSLQAK	9	Unmodified	_STASSLQAK_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.740234375	2	446.740357	891.46616	0.60613	0.00027078	-0.83974	-0.00037515	-0.23361	-0.00010436	446.73998357358886	16.983	0.17096	16.983	16.858	17.029	0					8	4	3	0	0	0	0.12834	1	4705	4705		72.879	11.188	1	346490			38829	854	26487	26580	39305	39305					0.016086041381413452
STASTVES	8	Unmodified	_STASTVES_					0	0	0		ENST00000379825.6_2_9:32988108-32989773:-|nuORF	ENST00000379825.6_2_9:32988108-32989773:-|nuORF	ENST00000379825.6_2_9:32988108-32989773:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.18218994140625	2	391.18234	780.350128	-0.042879	-1.6774E-05	-0.21399	-8.3708E-05	-0.25687	-0.00010048	391.1822362065101	16.957	0.53913	16.957	16.903	17.442	0					35	18	4	0	0	0	0.7887	1	4091	4091		12.959	12.959	1	3178300			38830	9089	26488	26581	39306	39306					-0.04883339432558387
STASWMPSLY	10	Unmodified	_STASWMPSLY_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.51068115234375	3	381.511075	1141.5114	0.82925	0.00031637	-1.8997	-0.00072475	-1.0704	-0.00040838	381.51049523543145	13.42	0.12792	13.42	13.34	13.468	0					7	3	3	0	0	0	0.65213	1	3047	3047		32.751	8.5187	1	655440			38831	1663	26489	26582	39307	39307					-0.05369913390950387
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.279541015625	2	511.279846	1020.54514	1.1184	0.0005718	-0.48992	-0.00025049	0.62844	0.00032131	511.27945088484284	20.772	0.15883	20.772	20.698	20.857	0					11	6	2	0	0	0	0.16041	1	5623	5623		79.489	36.625	1	188740			38832	8044;11109	26490	26583	39308	39308					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.27972412109375	2	511.279846	1020.54514	1.0081	0.00051544	-0.99949	-0.00051102	0.0086405	4.4177E-06	511.27933001446195	21.098	0.21945	21.098	21.01	21.23	0					12	5	3	0	0	0	0.00052769	1	6662	6662		156.16	112.51	1	1400000			38833	8044;11109	26490	26583	39309	39309					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.28118896484375	2	511.279846	1020.54514	4.1024	0.0020975	-2.5795	-0.0013188	1.5229	0.00077865	511.2787056121156	20.819	0.11937	20.819	20.761	20.881	0					6	4	2	0	0	0	0.27262	1	5878	5878		65.157	27.346	1	50518			38834	8044;11109	26490	26583	39310	39310					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2800598144531	2	511.279846	1020.54514	-0.38111	-0.00019485	0.34319	0.00017546	-0.037923	-1.9389E-05	511.28006628986816	20.821	0.14632	20.821	20.753	20.899	0					13	5	3	0	0	0	0.052273	1	5869	5869		117.53	60.805	1	245270			38835	8044;11109	26490	26583	39311	39311					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2796325683594	2	511.279846	1020.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.014	1	21.014	20.514	21.514	0								0	0	0	0.00059778	1	6902	6902		136.52	48.381	1				38836	8044;11109	26490	26583	39312	39312					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.279541015625	2	511.279846	1020.54514	0.84496	0.00043201	-1.2587	-0.00064354	-0.41371	-0.00021152	511.2792392588245	20.869	0.17426	20.869	20.792	20.966	0					6	4	2	0	0	0	0.32274	1	5952	5952		75.652	24.46	1	64034			38837	8044;11109	26490	26583	39313	39313					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2799987792969	2	511.279846	1020.54514	0.35677	0.00018241	-0.17699	-9.0489E-05	0.17978	9.1919E-05	511.27961230282074	20.884	0.17218	20.884	20.78	20.952	0					7	4	2	0	0	0	0.041277	1	5966	5966		112.3	55.663	1	311090			38838	8044;11109	26490	26583	39314	39314					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2796325683594	2	511.279846	1020.54514	-1.7624	-0.00090106	0.17982	9.1937E-05	-1.5825	-0.00080912	511.28009970458936	20.867	0.11077	20.867	20.808	20.919	0					4	2	2	0	0	0	0.35425	1	5962	5962		55.084	7.1683	1	56894			38839	8044;11109	26490	26583	39315	39315					0.03568831372456316
STATATVSVGK	11	Unmodified	_STATATVSVGK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.27984619140625	2	511.279846	1020.54514	0.019095	9.7627E-06	-0.012427	-6.3535E-06	0.006668	3.4092E-06	511.2798427370785	21	0.21819	21	20.891	21.11	0					8	4	2	0	0	0	0.00056369	1	6776	6776		145.46	90.684	1	1578700			38840	8044;11109	26490	26583	39316	39316					0.03568831372456316
STATIFSLQQ	10	Unmodified	_STATIFSLQQ_					0	0	0		tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2882080078125	2	548.287671	1094.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.258	1	38.258	37.758	38.758	0								0	0	0	0.2634	1	15002	15002		56.434	1.3499	1				38841	22956	26491	26584	39317	39317					0.01729117889499321
STATSSTLVSK	11	Unmodified	_STATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2914428710938	2	541.290411	1080.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.468	1	20.468	19.968	20.968	0								0	0	0	0.30435	1	5761	5761		51.528	12.275	1				38842	8680	26492	26585	39318	39318					0.029207966813146413
STAVATDVKK	10	Unmodified	_STAVATDVKK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2898864746094	2	510.290214	1018.56587	-0.11545	-5.8912E-05	-0.16598	-8.4697E-05	-0.28142	-0.00014361	510.29000517429944	15.915	0.06196	15.915	15.873	15.934	0					8	3	3	0	0	0	0.12383	1	3538	3538		91.265	34.544	1	120560			38843	3537	26493	26586	39319	39319					0.05733421752097456
STAVATDVKK	10	Unmodified	_STAVATDVKK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2902526855469	2	510.290214	1018.56587	-0.010587	-5.4023E-06	0.093267	4.7593E-05	0.08268	4.2191E-05	510.2902794052316	16.234	0.095108	16.234	16.18	16.275	0					4	2	2	0	0	0	0.012356	1	4360	4360		133.99	58.95	1	1150500			38844	3537	26493	26586	39320	39320					0.05733421752097456
STAVATDVKK	10	Unmodified	_STAVATDVKK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.289794921875	2	510.290214	1018.56587	-0.31242	-0.00015943	0.37021	0.00018892	0.057793	2.9491E-05	510.2902428415095	15.95	0.072836	15.95	15.88	15.953	0					6	3	2	0	0	0	0.05785	1	3726	3726		106.68	24.443	1	189670			38845	3537	26493	26586	39321	39321					0.05733421752097456
STAVATDVKK	10	Unmodified	_STAVATDVKK_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.29010009765625	2	510.290214	1018.56587	-0.42149	-0.00021508	0.67968	0.00034684	0.25819	0.00013175	510.29051963047795	16.205	0.11615	16.205	16.097	16.213	0					6	2	3	0	0	0	6.7747E-06	1	4575	4575		195.57	76.83	1	904670			38846	3537	26493	26586	39322	39322					0.05733421752097456
STAVAVLGSF	10	Unmodified	_STAVAVLGSF_					0	0	0		sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2603759765625	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.709	1	29.709	29.209	30.209	0								0	0	0	0.30913	1	10029	10029		49.442	0	1				38847	22479	26494	26587	39323	39323					0.03006365177634507
STAVAVLKK	9	Unmodified	_STAVAVLKK_					0	0	0		ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant;ARHGEF10|p.E997Gfs*16|1|0.43|ENSG00000104728|chr8:1928644-1928644|A/-|frameshift_variant;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7945861816406	2	458.794935	915.575317	-0.41559	-0.00019067	1.1533	0.00052914	0.73774	0.00033847	458.7949963448089	19.937	0.079977	19.937	19.89	19.97	0					4	2	2	0	0	0	0.17854	1	5259	5259		64.207	7.4862	1	46120			38848	213	26495	26588	39324	39324					0.11415234828291432
STAVFLRKGVD	11	Unmodified	_STAVFLRKGVD_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.56231689453125	3	398.227667	1191.66117	0.083219	3.314E-05	0.45653	0.0001818	0.53975	0.00021494	398.561922707152	32.334	0.14317	32.334	32.242	32.385	0					5	3	2	0	0	0	0.74458	1	12293	12293		23.378	1.6922	1	53225			38849	9870	26496	26589	39325	39325					0.07300774943132637
STAVGLVTK	9	Unmodified	_STAVGLVTK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2635803222656	2	438.263468	874.512382	0.25594	0.00011217	-0.46755	-0.00020491	-0.21161	-9.2741E-05	438.2631958423382	24.984	0.14188	24.984	24.92	25.062	0					7	4	2	0	0	0	0.032052	1	7454	7454		107.01	30.233	1	54699			38850	241	26497	26590	39326	39326					0.07010669040244011
STAVGLVTK	9	Unmodified	_STAVGLVTK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.2633361816406	2	438.263468	874.512382	0.01058	4.637E-06	-0.18855	-8.2634E-05	-0.17797	-7.7997E-05	438.2634026144582	25.311	0.19514	25.311	25.209	25.404	0					7	4	2	0	0	0	0.037712	1	8622	8622		101.46	35.994	1	219210			38851	241	26497	26590	39327	39327					0.07010669040244011
STAVGLVTK	9	Unmodified	_STAVGLVTK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2638244628906	2	438.263468	874.512382	3.172	0.0013902	-2.6879	-0.001178	0.48409	0.00021216	438.2622051419503	25.04	0.11062	25.04	24.973	25.083	0					5	3	2	0	0	0	0.037924	1	7735	7735		101.25	29.375	1	52685			38852	241	26497	26590	39328	39328					0.07010669040244011
STAVGLVTK	9	Unmodified	_STAVGLVTK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.26300048828125	2	438.263468	874.512382	-0.3924	-0.00017198	-0.32152	-0.00014091	-0.71392	-0.00031289	438.26329568341805	25.265	0.22068	25.265	25.155	25.375	0					11	4	3	0	0	0	0.032383	1	8935	8935		106.68	24.443	1	650300			38853	241	26497	26590	39329	39329					0.07010669040244011
STAVGLVTK	9	Unmodified	_STAVGLVTK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.26385498046875	2	438.263468	874.512382	0.30834	0.00013514	0.62174	0.00027249	0.93009	0.00040762	438.26369480552984	25.107	0.18627	25.107	25.012	25.198	0					6	4	2	0	0	0	0.11898	1	7922	7922		75.043	3.1658	1	74424			38854	241	26497	26590	39330	39330					0.07010669040244011
STAVGLVTK	9	Unmodified	_STAVGLVTK_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2632751464844	2	438.263468	874.512382	-0.57499	-0.000252	0.035401	1.5515E-05	-0.53959	-0.00023648	438.2634458096434	25.221	0.27024	25.221	25.11	25.381	0					12	5	3	0	0	0	0.017421	1	8812	8812		126.24	43.492	1	1059500			38855	241	26497	26590	39331	39331					0.07010669040244011
STAVGSRQK	9	Unmodified	_STAVGSRQK_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2590026855469	2	467.259248	932.503943	-1.1483	-0.00053653	0.84829	0.00039637	-0.29997	-0.00014016	467.2595589239743	11.645	0.09104	11.645	11.601	11.693	0					4	2	2	0	0	0	0.012231	1	2444	2444		136.27	62.293	1	244220			38856	7449	26498	26591	39332	39332					0.03499115123622687
STAVVVAELLK	11	Unmodified	_STAVVVAELLK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.345947265625	2	565.344989	1128.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.454	1	46.454	45.954	46.954	0								0	0	0	0.084704	1	18589	18589		79.489	29.953	1				38857	3049	26499	26592	39333	39333					0.11623427371432626
STCDHGIVAK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))DHGIVAK_	STC(1)DHGIVAK		STC(65)DHGIVAK		0	1	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2637329101562	2	544.263673	1086.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.827	1	16.827	16.327	17.327	0								0	0	0	0.18965	1	4070	4070		65.465	29.847	1				38858	3678	26500	26593	39334	39334	157				-0.02700279302234776
STCDHGIVAK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))DHGIVAK_	STC(1)DHGIVAK		STC(96)DHGIVAK		0	1	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2642822265625	2	544.263673	1086.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.814	1	16.814	16.314	17.314	0								0	0	0	0.031873	1	4063	4063		95.815	42.726	1				38859	3678	26500	26593	39335	39335	157				-0.02700279302234776
STCDHGIVAK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))DHGIVAK_	STC(1)DHGIVAK		STC(110)DHGIVAK		0	1	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2639770507812	2	544.263673	1086.51279	1.9791	0.0010771	-1.6349	-0.00088979	0.3442	0.00018734	544.2627875543759	16.978	0.16421	16.978	16.875	17.039	0					10	3	4	0	0	0	0.049549	1	4804	4804		109.48	51.248	1	713580			38860	3678	26500	26593	39336	39336	157				-0.02700279302234776
STCEAVMILR	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))EAVMILR_	STC(1)EAVMILR		STC(64)EAVMILR		0	1	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3;nc|ENSG00000167081|P40426-4|PBX3;nc|ENSG00000167081|P40426-3|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.2959594726562	2	590.296659	1178.57876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.809	1	37.809	37.309	38.309	0								0	0	0	0.20542	1	14358	14358		63.534	12.341	1				38861	5965	26501	26594	39337	39337	250				-0.00338206451692713
STCEAVMILR	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))EAVMILR_	STC(1)EAVMILR		STC(78)EAVMILR		0	1	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3;nc|ENSG00000167081|P40426-4|PBX3;nc|ENSG00000167081|P40426-3|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.2968139648438	2	590.296659	1178.57876	1.4881	0.00087843	-1.2119	-0.00071536	0.27625	0.00016307	590.7977236480817	37.749	0.13435	37.749	37.685	37.819	0					8	4	2	0	0	0	0.20981	1	14787	14787		78.264	10.77	1	108430			38862	5965	26501	26594	39338	39338	250				-0.00338206451692713
STCEAVMILR	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))EAVMILR_	STC(1)EAVMILR		STC(83)EAVMILR		0	1	0		ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3;nc|ENSG00000167081|P40426-4|PBX3;nc|ENSG00000167081|P40426-3|PBX3	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	ENST00000538998.1_1_9:128606084-128725334:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.2969360351562	2	590.296659	1178.57876	1.302	0.00076858	0.65261	0.00038523	1.9546	0.0011538	590.2962392508377	37.671	0.40392	37.671	37.4	37.804	0					20	8	4	0	0	0	0.17315	1	14776	14776		82.75	39.886	1	170650			38863	5965	26501	26594	39339	39339	250				-0.00338206451692713
STCEQIKDK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))EQIKDK_	STC(1)EQIKDK		STC(160)EQIKDK		0	1	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7692260742188	2	554.768788	1107.52302	-0.037958	-2.1058E-05	0.70086	0.00038881	0.6629	0.00036776	554.7694025786782	14.968	0.16878	14.968	14.91	15.079	0					5	3	2	0	0	0	0.0055674	1	4011	4011		155.58	36.842	1	243630			38864	5263	26502	26595	39340	39340	214				-0.02643716367651905
STCGKCGYPAK	11	Unmodified	_STCGKCGYPAK_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.7554931640625	2	557.754627	1113.4947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.924	1	16.924	16.424	17.424	0								0	0	0	0.32997	1	3941	3941		47.96	9.1534	1				38865	4677	26503	26596	39341	39341					-0.05750737548601137
STCGKCGYPAK	11	Unmodified	_STCGKCGYPAK_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7550659179688	2	557.754627	1113.4947	1.804	0.0010062	-1.7083	-0.0009528	0.095732	5.3395E-05	557.7540904061863	17.275	1.1236	17.275	17.058	18.182	0					46	27	4	0	0	0	0.11999	1	4835	4835		84.817	35.376	1	486320			38866	4677	26503	26596	39342	39342					-0.05750737548601137
STCGKCGYPAK	11	Unmodified	_STCGKCGYPAK_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.755126953125	2	557.754627	1113.4947	1.7331	0.00096663	-1.2301	-0.00068611	0.50295	0.00028052	557.7543297712232	17.438	0.70473	17.438	17.047	17.751	0					32	14	4	0	0	0	0.10275	1	5109	5109		89.029	32.308	1	428840			38867	4677	26503	26596	39343	39343					-0.05750737548601137
STCGKCGYPAK	11	Unmodified	_STCGKCGYPAK_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7568359375	2	557.754627	1113.4947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.074	1	17.074	16.574	17.574	0								0	0	0	0.31508	1	4182	4182		50.034	5.9167	1				38868	4677	26503	26596	39344	39344					-0.05750737548601137
STCGKCGYPAK	11	Unmodified	_STCGKCGYPAK_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7538452148438	2	557.754627	1113.4947	1.1235	0.00062662	-0.28717	-0.00016017	0.8363	0.00046645	557.7542977050197	17.131	0.31462	17.131	16.885	17.2	0					16	9	2	0	0	0	0.32407	1	4194	4194		59.931	13.959	1	109230			38869	4677	26503	26596	39345	39345					-0.05750737548601137
STCGKCGYPAK	11	Unmodified	_STCGKCGYPAK_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7548217773438	2	557.754627	1113.4947	1.2718	0.00070934	-0.96808	-0.00053995	0.3037	0.00016939	557.7541992630762	17.264	0.60996	17.264	17.039	17.649	0					30	12	3	0	0	0	0.13966	1	4906	4906		81.525	28.174	1	416570			38870	4677	26503	26596	39346	39346					-0.05750737548601137
STCGKCGYPAK	11	Unmodified	_STCGKCGYPAK_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7550659179688	2	557.754627	1113.4947	1.8249	0.0010178	-1.5608	-0.00087056	0.26408	0.00014729	557.7541340709264	17.266	0.90961	17.266	17.022	17.931	0					37	18	4	0	0	0	0.07149	1	4948	4948		96.665	41.889	1	566530			38871	4677	26503	26596	39347	39347					-0.05750737548601137
STCIGILAK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IGILAK_	STC(1)IGILAK		STC(100)IGILAK		0	1	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.77020263671875	2	481.770603	961.526652	-0.10496	-5.0566E-05	-0.85927	-0.00041397	-0.96423	-0.00046454	481.77027186195073	32.391	0.14516	32.391	32.331	32.476	0					8	3	3	0	0	0	0.037569	1	12310	12310		101.6	19.36	1	188210			38872	1181	26504	26597	39348	39348	41				0.04434998196882134
STCIGILAK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IGILAK_	STC(1)IGILAK		STC(99)IGILAK		0	1	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7707214355469	2	481.770603	961.526652	-0.62199	-0.00029966	0.33118	0.00015955	-0.29082	-0.00014011	481.7709524565	32.379	0.31958	32.379	32.17	32.489	0					11	6	3	0	0	0	0.0406	1	12214	12214		98.629	13.714	1	263250			38873	1181	26504	26597	39349	39349	41				0.04434998196882134
STCIYGGAPK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IYGGAPK_	STC(1)IYGGAPK		STC(160)IYGGAPK		0	1	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2554931640625	2	527.255317	1052.49608	0.57466	0.00030299	0.90749	0.00047848	1.4822	0.00078147	527.2562427072533	24.15	0.21492	24.15	23.978	24.193	0					17	6	3	0	0	0	0.0061488	1	7037	7037		162.25	87.209	1	383300			38874	763;1982	26505	26598	39350	39350	24				-0.02806780188166158
STCIYGGAPK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IYGGAPK_	STC(1)IYGGAPK		STC(140)IYGGAPK		0	1	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2554931640625	2	527.255317	1052.49608	0.10437	5.5028E-05	0.6088	0.00032099	0.71317	0.00037602	527.2559494817322	24.391	0.2452	24.391	24.204	24.45	0					21	5	5	0	0	0	0.011749	1	8195	8195		136.27	45.898	1	2121100			38875	763;1982	26505	26598	39351	39351	24				-0.02806780188166158
STCIYGGAPK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IYGGAPK_	STC(1)IYGGAPK		STC(130)IYGGAPK		0	1	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2557373046875	2	527.255317	1052.49608	0.34277	0.00018073	0.74246	0.00039147	1.0852	0.00057219	527.2557423933272	24.122	0.16662	24.122	23.991	24.157	0					10	5	2	0	0	0	0.016791	1	7320	7320		127.46	85.066	1	761960			38876	763;1982	26505	26598	39352	39352	24				-0.02806780188166158
STCIYGGAPK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IYGGAPK_	STC(1)IYGGAPK		STC(140)IYGGAPK		0	1	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2554931640625	2	527.255317	1052.49608	1.7566	0.00092615	-0.89022	-0.00046938	0.86633	0.00045678	527.2552932011668	24.349	0.21372	24.349	24.196	24.41	0					20	4	5	0	0	0	0.011749	1	8502	8502		136.27	72.061	1	2618600			38877	763;1982	26505	26598	39353	39353	24				-0.02806780188166158
STCIYGGAPK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IYGGAPK_	STC(1)IYGGAPK		STC(60)IYGGAPK		0	1	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2554931640625	2	527.255317	1052.49608	0.28437	0.00014994	-0.3375	-0.00017795	-0.05313	-2.8013E-05	527.255347109721	24.385	0.26672	24.385	24.18	24.447	0					8	5	2	0	0	0	0.36476	1	8521	8521		60.118	24.966	1	153460			38878	763;1982	26505	26598	39354	39354	24				-0.02806780188166158
STCIYGGAPK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))IYGGAPK_	STC(1)IYGGAPK		STC(150)IYGGAPK		0	1	0		nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	nc|ENSG00000108654|P17844-2|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	nc|ENSG00000108654|P17844-2|DDX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2554931640625	2	527.255317	1052.49608	3.4717	0.0018305	-2.5646	-0.0013522	0.90705	0.00047825	527.2540426407537	24.304	0.21639	24.304	24.147	24.364	0					8	4	2	0	0	0	0.0086754	1	8355	8355		148.99	78.171	1	3340400			38879	763;1982	26505	26598	39355	39355	24				-0.02806780188166158
STCLTSGLK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))LTSGLK_	STC(1)LTSGLK		STC(110)LTSGLK		0	1	0		ENST00000527503.1_1_11:92881705-92887463:-|nuORF;nc|ENSG00000180773|Q6YBV0-2|SLC36A4;ENSG00000180773|ENST00000326402|SLC36A4	ENST00000527503.1_1_11:92881705-92887463:-|nuORF	ENST00000527503.1_1_11:92881705-92887463:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7497253417969	2	483.749867	965.485181	2.4354	0.0011781	-1.2061	-0.00058345	1.2293	0.0005947	483.74854837364825	26.323	0.4696	26.323	26.218	26.688	0					16	9	3	0	0	0	0.026538	1	9302	9302		112.41	19.215	1	675330			38880	6815	26506	26599	39356	39356	291				0.0010581743754300987
STCNDLIAK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))NDLIAK_	STC(1)NDLIAK		STC(46)NDLIAK		0	1	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENST00000496367.1_1_22:31266465-31268361:+|nuORF;OSBP|p.I255Nfs*16|1|0.03|ENSG00000110048|chr11:59608542-59608543|-/AACATAAT|frameshift_variant	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2525634765625	2	511.252774	1020.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.638	1	23.638	23.138	24.138	0								0	0	0	0.23111	1	7247	7247		46.457	22.254	1				38881	2606	26507	26600	39357	39357	103				-0.01843084050778998
STCNTKLTLK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))NTKLTLK_	STC(1)NTKLTLK		STC(49)NTKLTLK		0	1	0		nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000169756|P48059|LIMS1	nc|ENSG00000169756|P48059|LIMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.2129211425781	3	389.213029	1164.61726	0.72671	0.00028285	-1.3678	-0.00053237	-0.6411	-0.00024952	389.2125758551976	21.238	0.14082	21.238	21.106	21.247	0					9	3	4	0	0	0	0.46192	1	6710	6710		49.466	17.432	1	1573800			38882	6183	26508	26601	39358	39358	264				0.04153422454464817
STCNTKLTLK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))NTKLTLK_	STC(1)NTKLTLK		STC(110)NTKLTLK		0	1	0		nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000169756|P48059|LIMS1	nc|ENSG00000169756|P48059|LIMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.8175048828125	2	583.315906	1164.61726	1.3685	0.00079827	-1.1048	-0.00064444	0.26371	0.00015383	583.8167366308114	21.137	0.36268	21.137	21.011	21.374	0					19	7	3	0	0	0	0.057264	1	6964	6964		106.88	43.346	1	2495100			38883	6183	26508	26601	39359	39359	264				0.04153422454464817
STCNTKLTLK	10	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))NTKLTLK_	STC(1)NTKLTLK		STC(65)NTKLTLK		0	1	0		nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000169756|P48059|LIMS1	nc|ENSG00000169756|P48059|LIMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.8176879882812	2	583.315906	1164.61726	-1.7157	-0.0010008	1.6657	0.00097162	-0.050061	-2.9202E-05	583.8185102127974	20.975	0.24387	20.975	20.908	21.152	0					13	6	4	0	0	0	0.31894	1	6003	6003		65.157	17.5	1	736050			38884	6183	26508	26601	39360	39360	264				0.04153422454464817
STCQRFVEK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))QRFVEK_	STC(1)QRFVEK		STC(62)QRFVEK		0	1	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.5257568359375	3	385.525607	1153.55499	0.74397	0.00028682	-0.37981	-0.00014643	0.36416	0.00014039	385.52545928845313	18.539	0.10346	18.539	18.485	18.588	0					6	2	3	0	0	0	0.19605	1	5452	5452		62.107	30.473	1	243170			38885	6857	26509	26602	39361	39361	293				-0.01564303893860597
STCQRFVEK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))QRFVEK_	STC(1)QRFVEK		STC(120)QRFVEK		0	1	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.7850341796875	2	577.784773	1153.55499	-0.066103	-3.8193E-05	0.16792	9.7022E-05	0.10182	5.8829E-05	577.7851162041273	18.556	0.18032	18.556	18.461	18.641	0					13	4	4	0	0	0	0.022525	1	5456	5456		117.81	45.934	1	1255500			38886	6857	26509	26602	39362	39362	293				-0.01564303893860597
STCQRFVEK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))QRFVEK_	STC(1)QRFVEK		STC(110)QRFVEK		0	1	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.7845458984375	2	577.784773	1153.55499	-0.014086	-8.1388E-06	0.16163	9.3386E-05	0.14754	8.5247E-05	577.7850223405134	18.26	0.13345	18.26	18.204	18.337	0					10	5	3	0	0	0	0.032383	1	4734	4734		106.68	42.476	1	258750			38887	6857	26509	26602	39363	39363	293				-0.01564303893860597
STCQRFVEK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))QRFVEK_	STC(1)QRFVEK		STC(76)QRFVEK		0	1	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.784912109375	2	577.784773	1153.55499	1.7072	0.00098637	-1.7986	-0.0010392	-0.09143	-5.2827E-05	577.7839148003932	18.501	0.26752	18.501	18.344	18.611	0					17	5	5	0	0	0	0.11411	1	5700	5700		76.17	15.198	1	1908900			38888	6857	26509	26602	39364	39364	293				-0.01564303893860597
STCQRFVEK	9	Carbamidomethyl (C)	_STC(Carbamidomethyl (C))QRFVEK_	STC(1)QRFVEK		STC(99)QRFVEK		0	1	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	577.784912109375	2	577.784773	1153.55499	-1.6272	-0.00094017	2.3843	0.0013776	0.75708	0.00043743	577.7860905488745	18.332	0.11702	18.332	18.259	18.376	0					5	3	2	0	0	0	0.04067	1	4767	4767		98.582	31.088	1	232720			38889	6857	26509	26602	39365	39365	293				-0.01564303893860597
STCSPIISK	9	Unmodified	_STCSPIISK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2466735839844	2	468.24696	934.479368	0.84421	0.0003953	-0.54572	-0.00025553	0.29849	0.00013977	468.2466823926123	24.149	0.26419	24.149	24.036	24.3	0					11	8	2	0	0	0	0.013878	1	7079	7079		132.76	58.783	1	99959			38890	6249	26510	26603	39366	39366					0.009507189258897597
STCSPIISK	9	Unmodified	_STCSPIISK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.24658203125	2	468.24696	934.479368	0.36085	0.00016897	-0.98056	-0.00045915	-0.61971	-0.00029018	468.2465979221591	24.47	0.36251	24.47	24.324	24.687	0					22	8	4	0	0	0	0.0076184	1	8233	8233		146.79	61.87	1	785500			38891	6249	26510	26603	39367	39367					0.009507189258897597
STCSPIISK	9	Unmodified	_STCSPIISK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.2467346191406	2	468.24696	934.479368	-0.12881	-6.0315E-05	-0.827	-0.00038724	-0.95581	-0.00044755	468.2466768545171	24.418	0.36532	24.418	24.262	24.628	0					21	7	5	0	0	0	0.022525	1	8532	8532		117.81	45.934	1	797180			38892	6249	26510	26603	39368	39368					0.009507189258897597
STCSPIISK	9	Unmodified	_STCSPIISK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2466735839844	2	468.24696	934.479368	-0.51336	-0.00024038	-0.081167	-3.8006E-05	-0.59453	-0.00027839	468.2468388268082	24.388	0.31785	24.388	24.229	24.547	0					9	6	2	0	0	0	0.30841	1	8418	8418		49.536	18.006	1	203400			38893	6249	26510	26603	39369	39369					0.009507189258897597
STDDSAVPPP	10	Unmodified	_STDDSAVPPP_					0	0	0		ZNRF1|p.V67Cfs*96|2|0.17|ENSG00000186187|chr16:74999864-74999864|G/-|frameshift_variant;ENSG00000186187|ENST00000335325|ZNRF1;nc|ENSG00000186187|Q8ND25-2|ZNRF1	ZNRF1|p.V67Cfs*96|2|0.17|ENSG00000186187|chr16:74999864-74999864|G/-|frameshift_variant	ZNRF1|p.V67Cfs*96|2|0.17|ENSG00000186187|chr16:74999864-74999864|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7278747558594	2	493.227279	984.440005	-0.12739	-6.2834E-05	-0.48112	-0.0002373	-0.60851	-0.00030013	493.22719679750656	23.127	0.1736	23.127	23.058	23.232	0					9	5	2	0	0	0	0.60076	1	6667	6667		34.173	3.6689	1	52245			38894	7124	26511	26604	39370	39370					-0.052837098239933766
STDGAKVFSK	10	Unmodified	_STDGAKVFSK_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2752075195312	2	520.274564	1038.53457	0.27097	0.00014098	2.9377	0.0015284	3.2086	0.0016694	520.2751071537513	19.081	0.29421	19.081	18.898	19.192	0					21	9	4	0	0	0	0.010125	1	5103	5103		142.36	51.991	1	291780			38895	2070	26512	26605	39371	39371					0.016848487180141092
STDGAKVFSK	10	Unmodified	_STDGAKVFSK_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2747192382812	2	520.274564	1038.53457	1.6885	0.00087846	0.56913	0.0002961	2.2576	0.0011746	520.2738444527955	19.321	0.65944	19.321	19.066	19.726	0					38	13	5	0	0	0	0.011683	1	6100	6100		136.52	47.486	1	1893600			38896	2070	26512	26605	39372	39372					0.016848487180141092
STDGAKVFSK	10	Unmodified	_STDGAKVFSK_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2747192382812	2	520.274564	1038.53457	1.6245	0.00084521	2.1072	0.0010963	3.7317	0.0019415	520.2739544270689	19.277	0.56003	19.277	19.031	19.591	0					28	11	5	0	0	0	0.0088982	1	5947	5947		147.73	69.468	1	877040			38897	2070	26512	26605	39373	39373					0.016848487180141092
STDKGILL	8	Unmodified	_STDKGILL_					0	0	0			REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.7499084472656	2	423.750193	845.485833	-0.35797	-0.00015169	-0.30991	-0.00013132	-0.66788	-0.00028301	423.75000556541147	38.99	0.16319	38.99	38.886	39.049	0					5	3	2	0	0	0	0.49887	1	15389	15389		60.294	0	1	59796	+		38898	13069	26513	26606	39374	39374					0.056909801489041456
STDKQTCLK	9	Unmodified	_STDKQTCLK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.26123046875	2	512.260599	1022.50665	1.1902	0.0006097	-0.77854	-0.00039882	0.41168	0.00021088	512.260185729406	14.763	0.24938	14.763	14.685	14.934	0					18	11	3	0	0	0	0.0076184	1	3091	3091		146.79	61.87	1	330960			38899	11716	26514	26607	39375	39375					-0.0037079753374200664
STDKQTCLK	9	Unmodified	_STDKQTCLK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2606201171875	2	512.260599	1022.50665	1.0543	0.00054009	-1.2104	-0.00062002	-0.15603	-7.9929E-05	512.2600860128764	15.076	0.48166	15.076	14.98	15.462	0					26	11	4	0	0	0	0.0051572	1	3803	3803		157.34	58.715	1	3054900			38900	11716	26514	26607	39376	39376					-0.0037079753374200664
STDKQTCLK	9	Unmodified	_STDKQTCLK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2605590820312	2	512.260599	1022.50665	0.50591	0.00025916	-0.68976	-0.00035334	-0.18385	-9.4177E-05	512.2604277702948	15.053	0.55875	15.053	14.797	15.356	0					28	11	4	0	0	0	0.0028263	1	4024	4024		169.65	56.241	1	3481900			38901	11716	26514	26607	39377	39377					-0.0037079753374200664
STDKQTCLK	9	Unmodified	_STDKQTCLK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.8427429199219	3	341.842825	1022.50665	1.474	0.00050389	-3.1258	-0.0010685	-1.6517	-0.00056464	341.8416392186879	15.047	0.26549	15.047	14.977	15.242	0					9	5	3	0	0	0	0.30841	1	4043	4043		65.157	15.716	1	923560			38902	11716	26514	26607	39378	39378					-0.0037079753374200664
STDKQTCLK	9	Unmodified	_STDKQTCLK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2615966796875	2	512.260599	1022.50665	0.9111	0.00046672	-0.38289	-0.00019614	0.52821	0.00027058	512.26057277411	14.821	0.26902	14.821	14.764	15.033	0					27	13	4	0	0	0	0.13726	1	3203	3203		70.816	17.465	1	503680			38903	11716	26514	26607	39379	39379					-0.0037079753374200664
STDKQTCLK	9	Unmodified	_STDKQTCLK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2606201171875	2	512.260599	1022.50665	0.054333	2.7833E-05	0.15394	7.8856E-05	0.20827	0.00010669	512.260822384556	15.021	0.56934	15.021	14.811	15.38	0					26	11	3	0	0	0	0.0015666	1	3855	3855		177.3	63.893	1	5427400			38904	11716	26514	26607	39380	39380					-0.0037079753374200664
STDKQTCLK	9	Carbamidomethyl (C)	_STDKQTC(Carbamidomethyl (C))LK_	STDKQTC(1)LK		STDKQTC(170)LK		0	1	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7720947265625	2	540.771331	1079.52811	1.9097	0.0010327	-1.0722	-0.00057983	0.83748	0.00045289	540.7708662073063	14.341	0.16683	14.341	14.3	14.467	0					11	4	4	0	0	0	0.0030642	1	3481	3481		168.26	58.78	1	881130			38905	11716	26514	26608	39381	39381	465				-0.008474125050270231
STDKQTCLK	9	Carbamidomethyl (C)	_STDKQTC(Carbamidomethyl (C))LK_	STDKQTC(1)LK		STDKQTC(180)LK		0	1	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7716674804688	2	540.771331	1079.52811	1.9967	0.0010797	-1.5787	-0.00085369	0.41802	0.00022605	540.7706998822604	14.324	0.24618	14.324	14.217	14.463	0					15	5	5	0	0	0	0.0016668	1	3676	3676		176.44	54.269	1	1655800			38906	11716	26514	26608	39382	39382	465				-0.008474125050270231
STDKQTCLK	9	Carbamidomethyl (C)	_STDKQTC(Carbamidomethyl (C))LK_	STDKQTC(1)LK		STDKQTC(100)LK		0	1	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7728881835938	2	540.771331	1079.52811	1.0385	0.0005616	0.7646	0.00041347	1.8031	0.00097508	540.7717196977943	14.075	0.15238	14.075	13.986	14.139	0					12	6	3	0	0	0	0.037712	1	2923	2923		101.46	35.031	1	175440			38907	11716	26514	26608	39383	39383	465				-0.008474125050270231
STDKQTCLK	9	Carbamidomethyl (C)	_STDKQTC(Carbamidomethyl (C))LK_	STDKQTC(1)LK		STDKQTC(96)LK		0	1	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.772216796875	2	540.771331	1079.52811	-1.4819	-0.00080137	3.5419	0.0019154	2.06	0.001114	540.7732014970579	14.07	0.12047	14.07	14.013	14.133	0					11	5	3	0	0	0	0.047855	1	2920	2920		96.034	39.401	1	221130			38908	11716	26514	26608	39384	39384	465				-0.008474125050270231
STDKQTCLK	9	Carbamidomethyl (C)	_STDKQTC(Carbamidomethyl (C))LK_	STDKQTC(1)LK		STDKQTC(140)LK		0	1	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7720336914062	2	540.771331	1079.52811	2.0798	0.0011247	-1.2127	-0.00065581	0.86702	0.00046886	540.7708866769425	14.299	0.26885	14.299	14.188	14.457	0					13	5	4	0	0	0	0.011893	1	3513	3513		136.99	43.794	1	1827900			38909	11716	26514	26608	39385	39385	465				-0.008474125050270231
STDKQTCLK	9	Carbamidomethyl (C)	_STDKQTC(Carbamidomethyl (C))LK_	STDKQTC(1)LK		STDKQTC(160)LK		0	1	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7723999023438	2	540.771331	1079.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.301	1	14.301	13.801	14.801	0								0	0	0	0.006929	1	3526	3526		155.58	51.528	1				38910	11716	26514	26608	39386	39386	465				-0.008474125050270231
STDLLGLQG	9	Unmodified	_STDLLGLQG_					0	0	0		ENSG00000063169|ENST00000594866|BICRA	ENSG00000063169|ENST00000594866|BICRA	ENSG00000063169|ENST00000594866|BICRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2425842285156	2	452.242732	902.470912	-0.02044	-9.2439E-06	-0.13609	-6.1545E-05	-0.15653	-7.0789E-05	452.24259728543876	23.555	0.53299	23.555	23.372	23.905	0					54	19	4	0	0	0	0.030949	1	6821	6821		108.09	1.08	1	2435100			38911	1337	26515	26609	39387	39387					0.015774882809296287
STDMPAAFK	9	Unmodified	_STDMPAAFK_					0	0	0		ENST00000533834.1_1_1:104080032-104087738:+|nuORF;ENST00000605810.1_1_3:70174691-70175321:-|nuORF;nc|ENSG00000185946|Q96LT9-2|RNPC3;ENSG00000185946|ENST00000423855|RNPC3	ENST00000533834.1_1_1:104080032-104087738:+|nuORF	ENST00000533834.1_1_1:104080032-104087738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2314147949219	2	484.23131	966.448068	0.32785	0.00015875	-0.15048	-7.2867E-05	0.17737	8.5887E-05	484.23132816220965	30.424	0.17514	30.424	30.378	30.553	0					6	4	2	0	0	0	0.0792	1	10977	10977		84.916	33.58	1	78038			38912	7114	26516	26610	39388	39388					-0.03649854108209638
STDMPAAFK	9	Unmodified	_STDMPAAFK_					0	0	0		ENST00000533834.1_1_1:104080032-104087738:+|nuORF;ENST00000605810.1_1_3:70174691-70175321:-|nuORF;nc|ENSG00000185946|Q96LT9-2|RNPC3;ENSG00000185946|ENST00000423855|RNPC3	ENST00000533834.1_1_1:104080032-104087738:+|nuORF	ENST00000533834.1_1_1:104080032-104087738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2314758300781	2	484.23131	966.448068	-0.095197	-4.6097E-05	-0.32556	-0.00015765	-0.42076	-0.00020374	484.2313164379427	30.465	0.29969	30.465	30.317	30.617	0					11	6	3	0	0	0	0.0792	1	11382	11382		84.916	19.112	1	136670			38913	7114	26516	26610	39389	39389					-0.03649854108209638
STDNKPYKCS	10	Carbamidomethyl (C)	_STDNKPYKC(Carbamidomethyl (C))S_	STDNKPYKC(1)S		STDNKPYKC(40)S		0	1	0		ZFHX4|p.N1587S|1|0.13|ENSG00000091656|chr8:76851681-76851681|A/G|missense_variant	ZFHX4|p.N1587S|1|0.13|ENSG00000091656|chr8:76851681-76851681|A/G|missense_variant	ZFHX4|p.N1587S|1|0.13|ENSG00000091656|chr8:76851681-76851681|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.5178527832031	3	400.516889	1198.52884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.382	1	13.382	12.882	13.882	0								0	0	0	0.36846	1	3091	3091		40.058	7.0188	1				38914	23136	26517	26611	39390	39390	760				-0.062486178559765904
STDNLAFLK	9	Unmodified	_STDNLAFLK_					0	0	0		ENSG00000182957|ENST00000382108|SPATA13;ENST00000466831.2_1_13:24796959-24798912:+|nuORF	ENSG00000182957|ENST00000382108|SPATA13	ENSG00000182957|ENST00000382108|SPATA13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7720031738281	2	504.771657	1007.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.774	1	38.774	38.274	39.274	0								0	0	0	0.099216	1	14740	14740		71.877	18.941	1				38915	6929	26518	26612	39391	39391					0.02529750206326753
STDNLLVNK	9	Unmodified	_STDNLLVNK_					0	0	0		PALB2|p.L1006Ffs*5|1|0.3|ENSG00000083093|chr16:23621457-23621458|-/A|frameshift_variant;PALB2|p.E1010*|1|0.26|ENSG00000083093|chr16:23621448-23621449|-/G|frameshift_variant;ENSG00000083093|ENST00000261584|PALB2	PALB2|p.L1006Ffs*5|1|0.3|ENSG00000083093|chr16:23621457-23621458|-/A|frameshift_variant	PALB2|p.L1006Ffs*5|1|0.3|ENSG00000083093|chr16:23621457-23621458|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2749328613281	2	502.274564	1002.53457	-2.0789	-0.0010442	1.3076	0.00065678	-0.77125	-0.00038738	502.2756611510076	27.063	0.16108	27.063	27.003	27.164	0					5	4	2	0	0	0	0.11411	1	8805	8805		90.37	29.398	1	63746			38916	1688	26519	26613	39392	39392					0.03340848718005418
STDNVSITK	9	Unmodified	_STDNVSITK_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.L1048*|1|0.18|ENSG00000133858|chr12:71632189-71632189|A/-|frameshift_variant;ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant;ZFC3H1|p.K385Nfs*9|5|0.36|ENSG00000133858|chr12:71645001-71645001|T/-|frameshift_variant;ZFC3H1|p.E390Nfs*4|1|0.39|ENSG00000133858|chr12:71644989-71644989|T/-|frameshift_variant;ZFC3H1|p.V423Sfs*2|1|0.32|ENSG00000133858|chr12:71644889-71644890|-/T|frameshift_variant;nc|ENSG00000133858|O60293-4|ZFC3H1;ZFC3H1|p.V320Sfs*2|1|0.13|ENSG00000133858|chr12:71656942-71656943|-/T|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.75067138671875	2	482.750921	963.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.885	1	20.885	20.385	21.385	0								0	0	0	0.14961	1	6553	6553		59.931	8.7381	1				38917	3875	26520	26614	39393	39393					0.004085694470063572
STDNVSITK	9	Unmodified	_STDNVSITK_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.L1048*|1|0.18|ENSG00000133858|chr12:71632189-71632189|A/-|frameshift_variant;ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant;ZFC3H1|p.K385Nfs*9|5|0.36|ENSG00000133858|chr12:71645001-71645001|T/-|frameshift_variant;ZFC3H1|p.E390Nfs*4|1|0.39|ENSG00000133858|chr12:71644989-71644989|T/-|frameshift_variant;ZFC3H1|p.V423Sfs*2|1|0.32|ENSG00000133858|chr12:71644889-71644890|-/T|frameshift_variant;nc|ENSG00000133858|O60293-4|ZFC3H1;ZFC3H1|p.V320Sfs*2|1|0.13|ENSG00000133858|chr12:71656942-71656943|-/T|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.75048828125	2	482.750921	963.48729	-0.10111	-4.881E-05	-0.53351	-0.00025755	-0.63462	-0.00030636	482.7506696763553	20.738	0.11883	20.738	20.679	20.798	0					6	2	3	0	0	0	0.040209	1	6779	6779		99.013	3.1978	1	205540			38918	3875	26520	26614	39394	39394					0.004085694470063572
STDNVSITK	9	Unmodified	_STDNVSITK_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.L1048*|1|0.18|ENSG00000133858|chr12:71632189-71632189|A/-|frameshift_variant;ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant;ZFC3H1|p.K385Nfs*9|5|0.36|ENSG00000133858|chr12:71645001-71645001|T/-|frameshift_variant;ZFC3H1|p.E390Nfs*4|1|0.39|ENSG00000133858|chr12:71644989-71644989|T/-|frameshift_variant;ZFC3H1|p.V423Sfs*2|1|0.32|ENSG00000133858|chr12:71644889-71644890|-/T|frameshift_variant;nc|ENSG00000133858|O60293-4|ZFC3H1;ZFC3H1|p.V320Sfs*2|1|0.13|ENSG00000133858|chr12:71656942-71656943|-/T|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7506103515625	2	482.750921	963.48729	-0.60716	-0.00029311	-0.15172	-7.3242E-05	-0.75887	-0.00036635	482.7509290588119	20.751	0.16877	20.751	20.642	20.811	0					8	3	3	0	0	0	0.090954	1	6656	6656		81.525	26.749	1	533870			38919	3875	26520	26614	39395	39395					0.004085694470063572
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2664794921875	2	507.266739	1012.51892	0.85355	0.00043298	-0.61519	-0.00031206	0.23836	0.00012091	507.26656190237065	23.642	0.28588	23.642	23.502	23.788	0					18	10	3	0	0	0	0.38194	1	6845	6845		58.23	12.278	1	94095			38920	4144	26521	26615	39396	39396					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2667541503906	2	507.266739	1012.51892	0.86512	0.00043885	-0.48941	-0.00024826	0.37571	0.00019059	507.2662816676687	23.923	0.66156	23.923	23.401	24.063	0					21	15	2	0	0	0	0.11308	1	7977	7977		93.143	27.34	1	1070000			38921	4144	26521	26615	39397	39397					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2666015625	2	507.266739	1012.51892	0.16387	8.3125E-05	-0.29404	-0.00014916	-0.13017	-6.6032E-05	507.2665760282017	23.872	0.31728	23.872	23.711	24.029	0					12	6	3	0	0	0	0.11308	1	8271	8271		93.143	38.421	1	321720			38922	4144	26521	26615	39398	39398					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2670593261719	2	507.266739	1012.51892	0.35212	0.00017862	-0.46544	-0.0002361	-0.11331	-5.748E-05	507.26619631235366	23.707	0.20356	23.707	23.574	23.777	0					10	5	2	0	0	0	0.2538	1	7249	7249		72.879	26.927	1	73176			38923	4144	26521	26615	39399	39399					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2667236328125	2	507.266739	1012.51892	0.093208	4.7281E-05	-0.03067	-1.5558E-05	0.062538	3.1723E-05	507.2666629104289	23.676	0.20976	23.676	23.601	23.811	0					9	5	2	0	0	0	0.2538	1	7261	7261		72.879	23.438	1	124620			38924	4144	26521	26615	39400	39400					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2664489746094	2	507.266739	1012.51892	-0.16961	-8.6036E-05	-0.043253	-2.1941E-05	-0.21286	-0.00010798	507.2667282522408	23.837	0.31324	23.837	23.683	23.996	0					16	6	4	0	0	0	0.08194	1	8126	8126		98.582	50.925	1	838430			38925	4144	26521	26615	39401	39401					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2674560546875	2	507.266739	1012.51892	1.2839	0.00065128	-0.046994	-2.3839E-05	1.2369	0.00062744	507.2670295360435	23.821	0.56223	23.821	23.418	23.981	0					17	11	2	0	0	0	0.31613	1	8121	8121		65.465	19.513	1	1029400			38926	4144	26521	26615	39402	39402					0.013165622009410072
STDPNSVFR	9	Unmodified	_STDPNSVFR_					0	0	0		ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENSG00000113240|ENST00000316308|CLK4	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.74884033203125	2	511.748713	1021.48287	1.0338	0.00052903	-0.39957	-0.00020448	0.63419	0.00032455	511.7482745054852	28.39	0.24815	28.39	28.25	28.498	0					21	6	4	0	0	0	0.13267	1	10033	10033		71.877	20.542	1	387680			38927	10307	26522	26616	39403	39403					-0.027008949758965173
STDPNSVFR	9	Unmodified	_STDPNSVFR_					0	0	0		ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENSG00000113240|ENST00000316308|CLK4	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7485046386719	2	511.748713	1021.48287	0.45385	0.00023225	-0.69161	-0.00035393	-0.23777	-0.00012168	511.748328017553	28.39	0.20743	28.39	28.291	28.499	0					10	4	3	0	0	0	0.13726	1	10408	10408		70.816	17.88	1	251190			38928	10307	26522	26616	39404	39404					-0.027008949758965173
STDPNSVFR	9	Unmodified	_STDPNSVFR_					0	0	0		ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENSG00000113240|ENST00000316308|CLK4	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	ENST00000520878.5_1_5:178030620-178044471:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7488098144531	2	511.748713	1021.48287	0.033617	1.7204E-05	0.19561	0.00010011	0.22923	0.00011731	511.7487534317196	28.319	0.26618	28.319	28.16	28.426	0					10	5	2	0	0	0	0.21263	1	10280	10280		60.118	12.461	1	426630			38929	10307	26522	26616	39405	39405					-0.027008949758965173
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Y110C|1|0.27|ENSG00000114315|chr3:194137719-194137719|A/G|missense_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2424011230469	2	452.242732	902.470912	0.67226	0.00030402	-1.267	-0.00057298	-0.59471	-0.00026895	452.24212136674754	23.917	0.80691	23.917	23.565	24.372	0					52	18	4	0	0	0	0.013878	1	7957	7957		132.76	36.567	1	17041000			38930	2841	26523	26617	39406	39406					0.0157748828091826
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Y110C|1|0.27|ENSG00000114315|chr3:194137719-194137719|A/G|missense_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2423095703125	2	452.242732	902.470912	-0.11491	-5.1968E-05	-0.43666	-0.00019747	-0.55157	-0.00024944	452.242435992805	23.818	0.71472	23.818	23.612	24.326	0					43	14	6	0	0	0	0.0059092	1	8244	8244		154.12	46.031	1	13511000			38931	2841	26523	26617	39407	39407					0.0157748828091826
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Y110C|1|0.27|ENSG00000114315|chr3:194137719-194137719|A/G|missense_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2425537109375	2	452.242732	902.470912	0.72076	0.00032596	0.61269	0.00027709	1.3335	0.00060305	452.2422782011804	23.818	0.61875	23.818	23.595	24.213	0					25	12	3	0	0	0	0.035062	1	8261	8261		104.06	13.687	1	1802000			38932	2841	26523	26617	39408	39408					0.0157748828091826
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Y110C|1|0.27|ENSG00000114315|chr3:194137719-194137719|A/G|missense_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2425231933594	2	452.242732	902.470912	0.37164	0.00016807	-0.70934	-0.00032079	-0.3377	-0.00015272	452.24234314952747	23.63	0.50376	23.63	23.446	23.949	0					34	12	4	0	0	0	0.10915	1	7230	7230		77.318	3.0625	1	1858100			38933	2841	26523	26617	39409	39409					0.0157748828091826
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Y110C|1|0.27|ENSG00000114315|chr3:194137719-194137719|A/G|missense_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2424621582031	2	452.242732	902.470912	-0.058269	-2.6352E-05	-0.15748	-7.122E-05	-0.21575	-9.7572E-05	452.2425842893539	23.636	0.53778	23.636	23.432	23.969	0					36	13	4	0	0	0	0.02953	1	7242	7242		109.48	24.563	1	1839900			38934	2841	26523	26617	39410	39410					0.0157748828091826
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Y110C|1|0.27|ENSG00000114315|chr3:194137719-194137719|A/G|missense_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.24237060546875	2	452.242732	902.470912	-0.41134	-0.00018602	-0.023859	-1.079E-05	-0.43519	-0.00019681	452.24255806304205	23.776	0.86197	23.776	23.585	24.447	0					42	17	4	0	0	0	0.037924	1	8101	8101		101.25	16.337	1	16101000			38935	2841	26523	26617	39411	39411					0.0157748828091826
STDPVAASIMK	11	Unmodified	_STDPVAASIMK_					0	0	0		nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6;ENST00000592358.1_1_19:4448313-4452408:-|nuORF;ENST00000588238.1_1_19:4448313-4448511:-|nuORF	nc|ENSG00000167671|Q9BZV1-2|UBXN6	nc|ENSG00000167671|Q9BZV1-2|UBXN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.2899780273438	2	560.289356	1118.56416	1.7945	0.0010054	-1.2517	-0.00070133	0.54274	0.00030409	560.2888913501895	33.361	0.32604	33.361	33.182	33.508	0					19	8	3	0	0	0	0.27742	1	12316	12316		65.157	20.78	1	156470			38936	6016	26524	26618	39412	39412					0.009620446718372477
STDQASAIK	9	Unmodified	_STDQASAIK_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.7374267578125	2	460.737814	919.461075	0.12445	5.734E-05	-0.8071	-0.00037186	-0.68265	-0.00031452	460.73747767659137	17.08	0.14324	17.08	17.029	17.172	0					5	3	2	0	0	0	0.026848	1	4766	4766		112.11	5.4242	1	102990			38937	3506	26525	26619	39413	39413					-0.0018769972447216787
STDQASAIK	9	Unmodified	_STDQASAIK_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7372131347656	2	460.737814	919.461075	-0.15183	-6.9954E-05	-0.69018	-0.00031799	-0.84201	-0.00038795	460.73730747970166	17.041	0.21873	17.041	16.964	17.183	0					5	4	2	0	0	0	0.032181	1	4992	4992		106.88	10.847	1	130370			38938	3506	26525	26619	39414	39414					-0.0018769972447216787
STDQASAIK	9	Unmodified	_STDQASAIK_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.7373046875	2	460.737814	919.461075	-0.45632	-0.00021025	-0.41783	-0.00019251	-0.87415	-0.00040275	460.73752910685846	17.044	0.167	17.044	16.94	17.107	0					7	3	3	0	0	0	0.14578	1	4859	4859		68.846	3.3808	1	275780			38939	3506	26525	26619	39415	39415					-0.0018769972447216787
STDQVLHWVV	10	Unmodified	_STDQVLHWVV_					0	0	0		ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENSG00000154727|ENST00000400075|GABPA	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.2069396972656	3	395.208384	1182.60332	-1.271	-0.0005023	-2.273	-0.00089833	-3.544	-0.0014006	395.2074954199916	17.67	0.10356	17.67	17.598	17.701	0					5	3	2	0	0	0	0.63224	1	4477	4477		30.318	4.2543	1	100820			38940	5099	26526	26620	39416	39416					0.019325130176866878
STDRLTVLK	9	Unmodified	_STDRLTVLK_					0	0	0		RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.8060302734375	2	516.806031	1031.59751	1.3474	0.00069636	1.4898	0.00076992	2.8372	0.0014663	516.8072973880538	24.759	0.18511	24.759	24.684	24.869	0					9	5	2	0	0	0	0.26077	1	7347	7347		39.873	0.62032	1	276030			38941	4280	26527	26621	39417	39417					0.08297414506023415
STDRLTVLK	9	Unmodified	_STDRLTVLK_					0	0	0		RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.8070678710938	2	516.806031	1031.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.839	1	24.839	24.339	25.339	0								0	0	0	0.32837	1	7651	7651		16.717	0	1				38942	4280	26527	26621	39418	39418					0.08297414506023415
STDRLTVLK	9	Unmodified	_STDRLTVLK_					0	0	0		RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.873046875	3	344.873113	1031.59751	-0.76958	-0.00026541	1.1863	0.00040911	0.41669	0.00014371	344.8738233094346	24.811	0.112	24.811	24.734	24.846	0					10	4	3	0	0	0	0.24169	1	7632	7632		56.632	8.6727	1	87687			38943	4280	26527	26621	39419	39419					0.08297414506023415
STDRLTVLK	9	Unmodified	_STDRLTVLK_					0	0	0		RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.8731689453125	3	344.873113	1031.59751	1.4664	0.00050571	-1.1176	-0.00038542	0.34879	0.00012029	344.8727982491745	24.999	0.21608	24.999	24.89	25.106	0					8	4	3	0	0	0	0.14578	1	8832	8832		68.846	21.189	1	779950			38944	4280	26527	26621	39420	39420					0.08297414506023415
STDRLTVLK	9	Unmodified	_STDRLTVLK_					0	0	0		RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	RASGEF1B|p.T323Lfs*5|1|0.3|ENSG00000138670|chr4:81442338-81442338|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.8057250976562	2	516.806031	1031.59751	0.20448	0.00010568	-0.22557	-0.00011657	-0.021087	-1.0898E-05	516.8060295215913	24.971	0.36118	24.971	24.869	25.23	0					15	7	3	0	0	0	0.080906	1	8694	8694		77.533	5.6558	1	1849400			38945	4280	26527	26621	39421	39421					0.08297414506023415
STDSDSFVK	9	Unmodified	_STDSDSFVK_					0	0	0		URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant;nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant	URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.22698974609375	2	493.227279	984.440005	-0.052164	-2.5729E-05	-0.41794	-0.00020614	-0.4701	-0.00023187	493.22698229451703	23.37	0.26678	23.37	23.263	23.529	0					12	5	3	0	0	0	0.037924	1	8054	8054		101.25	18.948	1	655850			38946	2448	26528	26622	39422	39422					-0.05283709823982008
STDSDSFVK	9	Unmodified	_STDSDSFVK_					0	0	0		URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant;nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant	URGCP|p.P521Lfs*8|1|0.22|ENSG00000106608|chr7:43877901-43877901|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.22711181640625	2	493.227279	984.440005	-0.61007	-0.0003009	0.19992	9.8606E-05	-0.41015	-0.00020229	493.22735752273684	23.393	0.26755	23.393	23.284	23.552	0					12	5	3	0	0	0	0.085655	1	7915	7915		82.75	3.2995	1	622330			38947	2448	26528	26622	39423	39423					-0.05283709823982008
STDSEVLTHYN	11	Unmodified	_STDSEVLTHYN_					0	0	0		ENSG00000139055|ENST00000266397|ERP27	ENSG00000139055|ENST00000266397|ERP27	ENSG00000139055|ENST00000266397|ERP27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.5264892578125	3	422.52633	1264.55716	-0.34188	-0.00014445	0.49745	0.00021018	0.15557	6.5732E-05	422.5266742093895	26.21	0.21552	26.21	26.151	26.366	0					10	4	3	0	0	0	0.60833	1	9241	9241		36.318	7.1476	1	499470			38948	4301	26529	26623	39424	39424					-0.06453596675009976
STDSQVKEK	9	Unmodified	_STDSQVKEK_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2616882324219	2	511.261653	1020.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.742	1	11.742	11.242	12.242	0								0	0	0	0.001501	1	2479	2479		124.08	44.368	1				38949	2878	26530	26624	39425	39425					-0.000680455242672906
STDSVPISK	9	Unmodified	_STDSVPISK_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.24774169921875	2	467.248015	932.481476	0.28786	0.0001345	-0.89468	-0.00041804	-0.60681	-0.00028353	467.24751658433047	21.758	0.14397	21.758	21.665	21.809	0					5	3	2	0	0	0	0.023928	1	6955	6955		115.49	33.254	1	131940			38950	4235	26531	26625	39426	39426					0.012534709353417384
STDVSHCVK	9	Unmodified	_STDVSHCVK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.23175048828125	2	488.231842	974.44913	-0.015508	-7.5716E-06	-0.35167	-0.0001717	-0.36718	-0.00017927	488.2316601896445	17.045	0.13082	17.045	16.978	17.109	0					7	4	2	0	0	0	0.07136	1	3989	3989		87.696	30.975	1	181300			38951	5924	26532	26626	39427	39427					-0.03911639739305883
STDVSHCVK	9	Unmodified	_STDVSHCVK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.23175048828125	2	488.231842	974.44913	-0.37945	-0.00018526	0.67698	0.00033052	0.29752	0.00014526	488.23210698898896	17.339	0.44521	17.339	17.251	17.696	0					17	11	2	0	0	0	0.0051608	1	4880	4880		157.33	77.878	1	1240600			38952	5924	26532	26626	39428	39428					-0.03911639739305883
STDVSHCVK	9	Unmodified	_STDVSHCVK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2315979003906	2	488.231842	974.44913	-1.0503	-0.0005128	-0.057593	-2.8119E-05	-1.1079	-0.00054092	488.2319952787082	17.085	0.12481	17.085	17.014	17.139	0					6	4	2	0	0	0	0.023928	1	4212	4212		115.49	19.304	1	108610			38953	5924	26532	26626	39429	39429					-0.03911639739305883
STDVSHCVK	9	Unmodified	_STDVSHCVK_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.23162841796875	2	488.231842	974.44913	-0.70717	-0.00034526	1.4111	0.00068893	0.70391	0.00034367	488.2324467424134	17.293	0.20135	17.293	17.234	17.435	0					7	4	2	0	0	0	0.0040894	1	5120	5120		162.25	87.997	1	786900			38954	5924	26532	26626	39430	39430					-0.03911639739305883
STECSMKGLCS	11	Unmodified	_STECSMKGLCS_					0	0	0		ENST00000281523.7_1_3:21792410-21792695:-|nuORF	ENST00000281523.7_1_3:21792410-21792695:-|nuORF	ENST00000281523.7_1_3:21792410-21792695:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.282958984375	2	573.235409	1144.45627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.43	1	19.43	18.93	19.93	0								0	0	0	0.40299	1	6140	6140		36.447	7.2972	1				38955	8412	26533	26627	39431	39431					-0.1101841124539078
STEDVTVSGR	10	Unmodified	_STEDVTVSGR_					0	0	0		ENSG00000159212|ENST00000349499|CLIC6;nc|ENSG00000159212|Q96NY7|CLIC6	ENSG00000159212|ENST00000349499|CLIC6	ENSG00000159212|ENST00000349499|CLIC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.759033203125	2	525.756735	1049.49892	3.4512	0.0018145	0.71332	0.00037503	4.1645	0.0021895	525.7570041347849	19.665	1.1179	19.665	19.557	20.675	0					50	22	3	0	0	0	0.28036	1	6131	6131		69.628	4.1622	1	2064800			38956	5303	26534	26628	39432	39432					-0.023852335296624005
STEFLALMK	9	Unmodified	_STEFLALMK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2799682617188	2	520.27826	1038.54197	1.426	0.00074191	0.46833	0.00024366	1.8943	0.00098557	520.2787221243902	45.48	0.14267	45.48	45.38	45.523	0					10	8	2	0	0	0	0.19605	1	16911	16911		62.107	14.192	1	54725			38957	7426	26535	26629	39433	39433					0.024238649940571122
STEFLALMK	9	Unmodified	_STEFLALMK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7777709960938	2	520.27826	1038.54197	1.6873	0.00087787	-2.5701	-0.0013372	-0.88279	-0.0004593	520.2778730974547	45.417	0.2133	45.417	45.318	45.531	0					29	12	3	0	0	0	0.24095	1	17562	17562		56.721	23.205	1	146730			38958	7426	26535	26629	39434	39434					0.024238649940571122
STEFLALMK	9	Unmodified	_STEFLALMK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2794799804688	2	520.27826	1038.54197	0.33226	0.00017287	1.8765	0.00097633	2.2088	0.0011492	520.2791393927798	45.384	0.12383	45.384	45.314	45.438	0					9	5	2	0	0	0	0.019882	1	18169	18169		122.18	55.747	1	95275			38959	7426	26535	26629	39435	39435					0.024238649940571122
STEFLALMK	9	Unmodified	_STEFLALMK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2783813476562	2	520.27826	1038.54197	1.6235	0.00084465	-2.4041	-0.0012508	-0.78066	-0.00040616	520.2777984853685	45.385	0.21023	45.385	45.306	45.517	0					21	8	3	0	0	0	0.028876	1	18166	18166		110.12	56.768	1	249540			38960	7426	26535	26629	39436	39436					0.024238649940571122
STEIHITLQVT	11	Unmodified	_STEIHITLQVT_					0	0	0		nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;ENSG00000261934|ENST00000573521|PCDHGA9	nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.26043701171875	3	414.562715	1240.66632	0.99661	0.00041316	-0.2563	-0.00010625	0.74031	0.0003069	414.5626742485024	18.068	0.93474	18.068	17.963	18.897	0					29	19	2	0	0	0	0.66391	1	5664	5664		31.068	0.49928	1	1670200			38961	8053	26536	26630	39437	39437					0.05561034015090627
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.892578125	3	379.892396	1136.65536	0.52394	0.00019904	-0.22458	-8.5317E-05	0.29935	0.00011372	379.89228334349923	18.505	0.085842	18.505	18.448	18.534	0					8	3	3	0	0	0	0.10506	1	4609	4609		78.264	37.184	1	266030			38962	6667;3192	26537	26631	39438	39438					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.3353271484375	2	569.334956	1136.65536	1.1423	0.00065033	-0.69863	-0.00039775	0.44363	0.00025257	569.334694579165	18.5	0.060831	18.5	18.442	18.503	0					6	2	3	0	0	0	0.40759	1	4605	4605		27.047	2.5281	1	212020			38963	6667;3192	26537	26631	39439	39439					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.892333984375	3	379.892396	1136.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.83	1	18.83	18.33	19.33	0								0	0	0	0.029433	1	5578	5578		96.034	41.257	1				38964	6667;3192	26537	26631	39440	39440					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.3355712890625	2	569.334956	1136.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.815	1	18.815	18.315	19.315	0								0	0	0	0.00080341	1	5571	5571		112.41	39.532	1				38965	6667;3192	26537	26631	39441	39441					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.3341064453125	2	569.334956	1136.65536	-0.27419	-0.00015611	-0.20818	-0.00011853	-0.48237	-0.00027463	569.3346571274844	18.504	0.068617	18.504	18.457	18.526	0					4	2	2	0	0	0	0.25761	1	4844	4844		39.253	0	1	83597			38966	6667;3192	26537	26631	39442	39442					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.89227294921875	3	379.892396	1136.65536	0.22664	8.6098E-05	-0.44296	-0.00016828	-0.21632	-8.2177E-05	379.89223214101816	18.764	0.2393	18.764	18.661	18.9	0					11	5	4	0	0	0	0.063171	1	5805	5805		90.601	45.579	1	738760			38967	6667;3192	26537	26631	39443	39443					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3350219726562	2	569.334956	1136.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.758	1	18.758	18.258	19.258	0								0	0	0	0.032708	1	5812	5812		88.177	24.871	1				38968	6667;3192	26537	26631	39444	39444					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.8924865722656	3	379.892396	1136.65536	0.29076	0.00011046	-0.4739	-0.00018003	-0.18313	-6.957E-05	379.892312884609	18.559	0.11835	18.559	18.52	18.638	0					5	3	2	0	0	0	0.063171	1	4876	4876		90.601	39.073	1	101360			38969	6667;3192	26537	26631	39445	39445					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.8921203613281	3	379.892396	1136.65536	-0.13364	-5.0771E-05	-0.28858	-0.00010963	-0.42223	-0.0001604	379.8922679973268	18.582	0.078598	18.582	18.512	18.591	0					4	2	2	0	0	0	0.28897	1	4870	4870		51.193	8.3284	1	220060			38970	6667;3192	26537	26631	39446	39446					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.3358154296875	2	569.334956	1136.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.59	1	18.59	18.09	19.09	0								0	0	0	0.17166	1	4881	4881		47.96	6.5329	1				38971	6667;3192	26537	26631	39447	39447					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.892333984375	3	379.892396	1136.65536	-0.47843	-0.00018175	0.26935	0.00010232	-0.20908	-7.9426E-05	379.8924908753777	18.727	0.3421	18.727	18.621	18.963	0					12	7	2	0	0	0	0.12834	1	5671	5671		72.879	33.626	1	1353200			38972	6667;3192	26537	26631	39448	39448					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.892333984375	3	379.892396	1136.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.777	1	18.777	18.277	19.277	0								0	0	0	0.095784	1	5686	5686		72.879	26.907	1				38973	6667;3192	26537	26631	39449	39449					0.09249676431454645
STEKIYIRK	9	Unmodified	_STEKIYIRK_					0	0	0		ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENSG00000120798|ENST00000333003|NR2C1;ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.3350219726562	2	569.334956	1136.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.77	1	18.77	18.27	19.27	0								0	0	0	0.032708	1	5682	5682		78.264	25.327	1				38974	6667;3192	26537	26631	39450	39450					0.09249676431454645
STEKRLFSM	9	Unmodified	_STEKRLFSM_					0	0	0			REV__ENSG00000182334|ENST00000641167|OR5P3	REV__ENSG00000182334|ENST00000641167|OR5P3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.783935546875	2	549.784241	1097.55393	0.52921	0.00029095	0.35839	0.00019704	0.8876	0.00048799	549.7847616243658	11.74	0.11411	11.74	11.677	11.791	0					7	4	2	0	0	0	0.61124	1	2328	2328		6.7355	3.5763	1	147900	+		38975	16880	26538	26632	39451	39451					0.009054817372543766
STENKSIK	8	Unmodified	_STENKSIK_					0	0	0			REV__ENSG00000165338|ENST00000298068|HECTD2	REV__ENSG00000165338|ENST00000298068|HECTD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7481994628906	2	453.748182	905.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.157	1	17.157	16.657	17.657	0								0	0	0	1.7419	1	4038	4038		26.693	2.4902	1		+		38976	16037	26539	26633	39452	39452					0.02528890655196392
STEPIYVYK	9	Unmodified	_STEPIYVYK_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2874755859375	2	550.28714	1098.55973	1.8342	0.0010093	-0.7557	-0.00041585	1.0785	0.00059348	550.2868090427073	31.98	0.32902	31.98	31.822	32.151	0					16	8	3	0	0	0	0.099922	1	11690	11690		79.451	35.334	1	321030			38977	6784	26540	26634	39453	39453					0.01438903520556778
STEPIYVYK	9	Unmodified	_STEPIYVYK_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2885131835938	2	550.28714	1098.55973	0.60714	0.0003341	0.99469	0.00054736	1.6018	0.00088147	550.2875329056126	31.926	0.21615	31.926	31.818	32.034	0					9	4	3	0	0	0	0.39215	1	12024	12024		42.396	6.7778	1	299070			38978	6784	26540	26634	39454	39454					0.01438903520556778
STEPPYSQK	9	Unmodified	_STEPPYSQK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;ENST00000443590.1_1_2:107314616-107314670:-|nuORF;ENST00000401075.3_1_1:31961199-31961370:-|nuORF;ENST00000359165.5_1_12:19610040-19610154:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7511596679688	2	518.750921	1035.48729	0.51535	0.00026734	0.05333	2.7665E-05	0.56868	0.000295	518.7509322573487	18.864	1.408	18.864	18.589	19.997	0					112	42	4	0	0	0	0.078509	2	4848	4848;4999		85.161	30.385	1	5996900			38979	5177;9513	26541	26635	39455;39456	39455					-0.029034305530103666
STEPPYSQK	9	Unmodified	_STEPPYSQK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;ENST00000443590.1_1_2:107314616-107314670:-|nuORF;ENST00000401075.3_1_1:31961199-31961370:-|nuORF;ENST00000359165.5_1_12:19610040-19610154:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7509765625	2	518.750921	1035.48729	0.056205	2.9156E-05	0.13584	7.0468E-05	0.19205	9.9624E-05	518.7508874465517	19.207	1.6332	19.207	18.889	20.522	0					135	37	5	0	0	0	0.022525	2	5831	5831;5997		117.81	46.515	1	29400000			38980	5177;9513	26541	26635	39457;39458	39457					-0.029034305530103666
STEPPYSQK	9	Unmodified	_STEPPYSQK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;ENST00000443590.1_1_2:107314616-107314670:-|nuORF;ENST00000401075.3_1_1:31961199-31961370:-|nuORF;ENST00000359165.5_1_12:19610040-19610154:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7510986328125	2	518.750921	1035.48729	0.19247	9.9845E-05	0.2738	0.00014203	0.46627	0.00024188	518.7510724978016	18.894	1.2304	18.894	18.642	19.872	0					97	39	4	0	0	0	0.015496	1	5008	5008		129.42	55.447	1	3358100			38981	5177;9513	26541	26635	39459	39459					-0.029034305530103666
STEPSYHP	8	Unmodified	_STEPSYHP_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2039489746094	2	459.203607	916.392661	-0.66769	-0.0003066	1.0323	0.00047402	0.36458	0.00016741	459.20448832137413	49.662	0.72327	49.662	49.418	50.141	0					86	29	4	0	0	0	0.77246	1	17882	17882		24.203	3.2558	1	725890	+		38982	12726	26542	26636	39460	39460					-0.06887944304332905
STERPLNSTTL	11	Unmodified	_STERPLNSTTL_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|360|3|anti-sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|360|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.88262939453125	3	406.882337	1217.62518	0.71012	0.00028893	-0.66461	-0.00027042	0.045504	1.8515E-05	406.8825022384329	27.551	0.62404	27.551	27.238	27.862	0					53	12	6	0	0	0	0.44025	1	9841	9841		48.602	7.1749	1	2624400	+		38983	20736	26543	26637	39461	39461					0.02507272975617525
STESDKAKKP	10	Unmodified	_STESDKAKKP_					0	0	0			REV__chr7:23418824-23468482|212|12.14|0.19|6.03|-|0|IGF2BP3,IGF2BP3|2	REV__chr7:23418824-23468482|212|12.14|0.19|6.03|-|0|IGF2BP3,IGF2BP3|2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.19622802734375	3	364.196144	1089.5666	1.0803	0.00039343	-0.92225	-0.00033588	0.15803	5.7553E-05	364.19576007278886	15.356	0.29937	15.356	15.246	15.546	0					13	6	4	0	0	0	0.63073	1	4018	4018		42.864	25.031	1	7635100	+		38984	12489	26544	26638	39462	39462					0.0254021640114388
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.7677001953125	2	520.766571	1039.51859	1.4787	0.00077006	-0.60615	-0.00031566	0.87255	0.0004544	520.7661567945235	27.849	0.34341	27.849	27.753	28.096	0					33	12	4	0	0	0	0.019258	1	8616	8616		123.21	53.58	1	3582300			38985	8001	26545	26639	39463	39463					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7664794921875	2	520.766571	1039.51859	1.469	0.000765	-1.0826	-0.00056378	0.38639	0.00020122	520.7658315812134	28.126	0.49403	28.126	28.004	28.498	0					41	12	5	0	0	0	4.3686E-13	1	9876	9876		233.57	109.48	1	17999000			38986	8001	26545	26639	39464	39464					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7667236328125	2	520.766571	1039.51859	0.29715	0.00015475	0.30394	0.00015828	0.60109	0.00031303	520.7666955055965	27.876	0.36419	27.876	27.762	28.126	0					45	13	4	0	0	0	0.001056	1	8912	8912		182.39	86.576	1	2972800			38987	8001	26545	26639	39465	39465					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7665405273438	2	520.766571	1039.51859	1.7094	0.00089018	-1.3805	-0.00071891	0.32888	0.00017127	520.7659336700713	28.133	0.68573	28.133	27.846	28.532	0					51	14	6	0	0	0	5.9778E-20	1	10260	10260		253.05	127.23	1	21188000			38988	8001	26545	26639	39466	39466					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7677001953125	2	520.766571	1039.51859	1.4168	0.0007378	0.1016	5.291E-05	1.5184	0.00079071	520.7666532249964	27.932	0.25677	27.932	27.838	28.095	0					13	6	3	0	0	0	0.0088974	1	9189	9189		143.37	47.558	1	668290			38989	8001	26545	26639	39467	39467					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.766845703125	2	520.766571	1039.51859	1.0281	0.00053539	-0.43188	-0.00022491	0.5962	0.00031048	520.7663293782756	27.915	0.33171	27.915	27.828	28.159	0					24	8	4	0	0	0	0.00022968	1	9181	9181		190.62	89.022	1	3245400			38990	8001	26545	26639	39468	39468					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.7667236328125	2	520.766571	1039.51859	-1.3389	-0.00069725	1.8814	0.00097978	0.54253	0.00028253	520.7676450971134	27.929	0.41513	27.929	27.688	28.103	0					20	10	4	0	0	0	0.0015666	1	9196	9196		177.3	84.161	1	674050			38991	8001	26545	26639	39469	39469					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7666625976562	2	520.766571	1039.51859	0.35914	0.00018703	0.15885	8.2722E-05	0.51799	0.00026975	520.7665737776057	28.066	0.51653	28.066	27.91	28.426	0					26	10	5	0	0	0	5.9778E-20	1	10109	10109		253.05	123.63	1	8074800			38992	8001	26545	26639	39470	39470					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7665405273438	2	520.766571	1039.51859	1.6238	0.00084562	-1.176	-0.0006124	0.44784	0.00023322	520.7658631111474	28.051	0.61453	28.051	27.846	28.46	0					48	12	6	0	0	0	5.863E-10	1	10102	10102		223.32	101.14	1	21908000			38993	8001	26545	26639	39471	39471					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7665405273438	2	520.766571	1039.51859	3.3759	0.0017581	-2.7516	-0.0014329	0.62431	0.00032512	520.7651019234598	28.034	0.46408	28.034	27.829	28.294	0					14	9	2	0	0	0	0.0079272	1	10118	10118		145.46	68.143	1	3849800			38994	8001	26545	26639	39472	39472					0.00041142481086353655
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	390.2117614746094	3	390.211794	1167.61355	0.56198	0.00021929	-0.56166	-0.00021917	0.00031785	1.2403E-07	390.21154759594236	22.853	0.10919	22.853	22.781	22.89	0					11	3	4	0	0	0	0.60147	1	6518	6518		34.087	9.8547	1	688130			38995	8001	26546	26640	39473	39473					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	584.8142700195312	2	584.814053	1167.61355	0.40748	0.0002383	-0.13145	-7.6876E-05	0.27603	0.00016143	584.8138518987794	22.848	0.28835	22.848	22.745	23.033	0					26	9	5	0	0	0	0.007513	1	6510	6510		133.99	55.73	1	1850400			38996	8001	26546	26640	39474	39474					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.814208984375	2	584.814053	1167.61355	0.046289	2.707E-05	0.034536	2.0197E-05	0.080825	4.7268E-05	584.8140098787043	23.17	0.45113	23.17	23.035	23.486	0					25	10	5	0	0	0	6.6337E-06	1	7618	7618		174.86	112.76	1	12242000			38997	8001	26546	26640	39475	39475					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	584.81396484375	2	584.814053	1167.61355	0.013577	7.94E-06	0.57241	0.00033476	0.58599	0.0003427	584.8142934040104	22.904	0.21923	22.904	22.809	23.029	0					20	7	4	0	0	0	0.11137	1	6787	6787		81.525	26.803	1	1261100			38998	8001	26546	26640	39476	39476					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.2119140625	3	390.211794	1167.61355	0.28698	0.00011198	-0.19165	-7.4784E-05	0.095331	3.7199E-05	390.2117040187439	23.103	0.61828	23.103	22.794	23.412	0					20	12	3	0	0	0	0.14893	1	7899	7899		86.882	33.285	1	4976900			38999	8001	26546	26640	39477	39477					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	584.8143310546875	2	584.814053	1167.61355	-0.2578	-0.00015077	0.46598	0.00027251	0.20818	0.00012175	584.814255421816	23.086	0.36682	23.086	22.978	23.344	0					22	7	4	0	0	0	6.6337E-06	1	7894	7894		174.86	106.08	1	9429900			39000	8001	26546	26640	39478	39478					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	390.211669921875	3	390.211794	1167.61355	-0.15422	-6.0179E-05	0.050312	1.9633E-05	-0.10391	-4.0546E-05	390.21181874084823	22.95	0.17813	22.95	22.869	23.047	0					12	4	4	0	0	0	0.18316	1	6917	6917		81.525	36.503	1	496310			39001	8001	26546	26640	39479	39479					0.03645075952249499
STFESKSYK	9	Unmodified	_STFESKSYK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7669677734375	2	538.766571	1075.51859	1.9224	0.0010357	-1.1891	-0.00064064	0.73328	0.00039507	538.7658631781915	18.552	0.11804	18.552	18.493	18.611	0					4	2	2	0	0	0	0.12834	1	5729	5729		72.879	17.375	1	593660			39002	6307	26547	26641	39480	39480					-0.016148575188935865
STFFYPKLK	9	Unmodified	_STFFYPKLK_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.8153076171875	2	565.815867	1129.61718	0.21578	0.00012209	0.46028	0.00026043	0.67606	0.00038252	565.8160920897244	35.961	0.39373	35.961	35.808	36.202	0					23	12	3	0	0	0	0.17854	1	13944	13944		64.207	19.185	1	196770			39003	5622	26548	26642	39481	39481					0.05755790516786874
STFGGHKSEK	10	Unmodified	_STFGGHKSEK_					0	0	0		ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.2705078125	2	539.269813	1076.52507	0.89128	0.00048064	0.30898	0.00016663	1.2003	0.00064727	539.2697905145586	12.934	0.13845	12.934	12.878	13.016	0					10	6	3	0	0	0	0.18316	1	2487	2487		81.525	17.991	1	222450			39004	22	26549	26643	39482	39482					-0.010129195675290248
STFGGHKSEK	10	Unmodified	_STFGGHKSEK_					0	0	0		ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.27001953125	2	539.269813	1076.52507	0.25207	0.00013593	1.7952	0.00096811	2.0473	0.001104	539.2707315885006	13.15	0.34746	13.15	13.07	13.417	0					27	9	4	0	0	0	0.0071914	1	2931	2931		157.34	54.571	1	2617600			39005	22	26549	26643	39483	39483					-0.010129195675290248
STFGGHKSEK	10	Unmodified	_STFGGHKSEK_					0	0	0		ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2699584960938	2	539.269813	1076.52507	-0.059238	-3.1945E-05	0.64032	0.00034531	0.58108	0.00031336	539.270052555705	12.936	0.077214	12.936	12.883	12.96	0					9	4	3	0	0	0	0.041183	1	2601	2601		112.3	52.177	1	316150			39006	22	26549	26643	39484	39484					-0.010129195675290248
STFGGHKSEK	10	Unmodified	_STFGGHKSEK_					0	0	0		ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2700805664062	2	539.269813	1076.52507	0.30284	0.00016331	1.3846	0.00074668	1.6874	0.00090999	539.2706489281361	13.137	0.42052	13.137	13.084	13.505	0					19	9	3	0	0	0	0.0068379	1	3135	3135		159.34	82.489	1	1851600			39007	22	26549	26643	39485	39485					-0.010129195675290248
STFGLSSKE	9	Unmodified	_STFGLSSKE_					0	0	0		PRR14L|p.I1216L|1|0.2|ENSG00000183530|chr22:31714193-31714193|T/G|missense_variant	PRR14L|p.I1216L|1|0.2|ENSG00000183530|chr22:31714193-31714193|T/G|missense_variant	PRR14L|p.I1216L|1|0.2|ENSG00000183530|chr22:31714193-31714193|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2395935058594	2	478.24019	954.465826	-0.32465	-0.00015526	-0.13722	-6.5623E-05	-0.46187	-0.00022089	478.2401304990126	18.645	0.23616	18.645	18.539	18.775	0					11	6	3	0	0	0	0.16002	1	4915	4915		66.429	0	1	508990			39008	11977	26550	26644	39486	39486					-0.013228155817046172
STFIGRAAAK	10	Unmodified	_STFIGRAAAK_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2934265136719	2	511.293091	1020.57163	-0.1287	-6.5801E-05	0.69468	0.00035519	0.56599	0.00028939	511.2933876484192	20.915	0.18279	20.915	20.845	21.028	0					7	5	2	0	0	0	0.17315	1	5680	5680		82.75	0.50997	1	258580			39009	2114	26551	26645	39487	39487					0.06216565054410239
STFIGRAAAK	10	Unmodified	_STFIGRAAAK_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2934265136719	2	511.293091	1020.57163	-0.0021751	-1.1121E-06	0.33306	0.00017029	0.33089	0.00016918	511.2933295084552	21.258	0.26922	21.258	21.163	21.433	0					14	6	3	0	0	0	0.15477	1	6715	6715		85.862	13.984	1	1369600			39010	2114	26551	26645	39488	39488					0.06216565054410239
STFIGRAAAK	10	Unmodified	_STFIGRAAAK_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2929992675781	2	511.293091	1020.57163	-0.23249	-0.00011887	0.056511	2.8893E-05	-0.17598	-8.9976E-05	511.2932102910646	20.921	0.084663	20.921	20.881	20.965	0					4	2	2	0	0	0	0.21754	1	5929	5929		77.318	8.5308	1	116660			39011	2114	26551	26645	39489	39489					0.06216565054410239
STFIGRAAAK	10	Unmodified	_STFIGRAAAK_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.293212890625	2	511.293091	1020.57163	-0.43709	-0.00022348	0.54226	0.00027725	0.10517	5.3774E-05	511.29347137102155	21.151	0.26218	21.151	21.045	21.307	0					9	5	3	0	0	0	0.065778	1	6981	6981		104.01	10.818	1	919350			39012	2114	26551	26645	39490	39490					0.06216565054410239
STFKLKSEVNK	11	Unmodified	_STFKLKSEVNK_					0	0	0		FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant;FAM111B|p.I283Lfs*16|1|0.32|ENSG00000189057|chr11:59124938-59124938|A/-|frameshift_variant;FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant	FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.57843017578125	3	427.578477	1279.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.253	1	21.253	20.753	21.753	0								0	0	0	0.29368	1	7021	7021		53.013	13.14	1				39013	7297	26552	26646	39491	39491					0.0849331328606695
STFKLKSEVNK	11	Unmodified	_STFKLKSEVNK_					0	0	0		FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant;FAM111B|p.I283Lfs*16|1|0.32|ENSG00000189057|chr11:59124938-59124938|A/-|frameshift_variant;FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant	FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.5783386230469	3	427.578477	1279.7136	-0.41016	-0.00017538	-0.0030313	-1.2961E-06	-0.41319	-0.00017667	427.5784530908468	21.246	0.2617	21.246	21.142	21.404	0					13	5	3	0	0	0	0.49481	1	6898	6898		44.614	18.55	1	1156600			39014	7297	26552	26646	39492	39492					0.0849331328606695
STFLKDAPGE	10	Unmodified	_STFLKDAPGE_					0	0	0		nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant;ENSG00000142330|ENST00000391984|CAPN10;ENST00000483602.1_1_2:241534571-241535939:+|nuORF;ENST00000416591.5_1_2:241535566-241537362:+|nuORF	nc|ENSG00000142330|Q9HC96-4|CAPN10	nc|ENSG00000142330|Q9HC96-4|CAPN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.76904296875	2	532.766571	1063.51859	1.716	0.00091425	2.3584	0.0012565	4.0745	0.0021707	532.7680456094894	35.751	0.18244	35.751	35.676	35.858	0					8	5	2	0	0	0	0.44601	1	13888	13888		51.193	3.5354	1	317090			39015	365	26553	26647	39493	39493					-0.010628575189002731
STFLLCKIP	9	Unmodified	_STFLLCKIP_					0	0	0			REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.1976623535156	3	341.196539	1020.56779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.263	1	21.263	20.763	21.763	0								0	0	0	0.3119	1	6730	6730		32.812	2.4947	1		+		39016	18419	26554	26648	39494	39494					0.05832759236329821
STFLSNTLK	9	Unmodified	_STFLSNTLK_					0	0	0		ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant;nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.77947998046875	2	505.779482	1009.54441	1.0705	0.00054143	-1.8962	-0.00095908	-0.82576	-0.00041765	505.77877157925184	35.463	0.29768	35.463	35.281	35.579	0					17	8	3	0	0	0	0.11898	1	13750	13750		75.043	22.107	1	439160			39017	3265	26555	26649	39495	39495					0.04002036723375113
STFNNDILSK	10	Unmodified	_STFNNDILSK_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7907104492188	2	569.790578	1137.5666	1.754	0.00099941	-0.87357	-0.00049775	0.88043	0.00050166	569.7899224122522	33.481	0.17698	33.481	33.415	33.592	0					6	4	2	0	0	0	0.44971	1	12408	12408		50.791	6.6744	1	127090			39018	2709	26556	26650	39496	39496					0.0033221640114788897
STFNNDILSK	10	Unmodified	_STFNNDILSK_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7911987304688	2	569.790578	1137.5666	0.056209	3.2028E-05	-0.23814	-0.00013569	-0.18193	-0.00010366	569.7908642784195	33.49	0.25242	33.49	33.368	33.62	0					16	6	4	0	0	0	0.011683	1	12382	12382		136.52	26.395	1	619950			39019	2709	26556	26650	39497	39497					0.0033221640114788897
STFNNDILSK	10	Unmodified	_STFNNDILSK_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.7908935546875	2	569.790578	1137.5666	0.10116	5.7641E-05	0.23284	0.00013267	0.334	0.00019031	569.7906596454387	33.291	0.32603	33.291	33.189	33.515	0					34	13	4	0	0	0	0.10583	1	11144	11144		94.409	17.092	1	1089900			39020	2709	26556	26650	39498	39498					0.0033221640114788897
STFNNDILSK	10	Unmodified	_STFNNDILSK_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7911376953125	2	569.790578	1137.5666	0.6297	0.0003588	0.001236	7.0425E-07	0.63094	0.0003595	569.7905604943052	33.255	0.36547	33.255	33.18	33.546	0					21	10	3	0	0	0	0.011683	1	11644	11644		136.52	53.765	1	744800			39021	2709	26556	26650	39499	39499					0.0033221640114788897
STFNNDILSK	10	Unmodified	_STFNNDILSK_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7908935546875	2	569.790578	1137.5666	1.6253	0.00092606	-0.82372	-0.00046935	0.80155	0.00045671	569.7900028955579	33.441	0.41663	33.441	33.283	33.7	0					33	8	6	0	0	0	0.00034343	1	12697	12697		188.91	26.66	1	7006600			39022	2709	26556	26650	39500	39500					0.0033221640114788897
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENST00000478088.1_1_16:76269257-76269449:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2958984375	2	518.295299	1034.57605	0.46356	0.00024026	0.064357	3.3356E-05	0.52791	0.00027361	518.2952693562833	32.883	0.2085	32.883	32.798	33.007	0					12	8	2	0	0	0	0.10915	1	10664	10664		77.318	31.366	1	103180			39023	1338	26557	26651	39501	39501					0.06014029477319127
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENST00000478088.1_1_16:76269257-76269449:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2957763671875	2	518.295299	1034.57605	0.052266	2.7089E-05	0.87871	0.00045543	0.93097	0.00048252	518.2955154967757	33.144	0.33088	33.144	33.009	33.339	0					16	9	3	0	0	0	0.010494	1	12235	12235		139.97	63.196	1	723210			39024	1338	26557	26651	39502	39502					0.06014029477319127
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENST00000478088.1_1_16:76269257-76269449:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2957153320312	2	518.295299	1034.57605	0.11247	5.8293E-05	0.67438	0.00034953	0.78685	0.00040782	518.2956688631666	32.96	0.56769	32.96	32.824	33.392	0					77	23	5	0	0	0	0.00324	1	10997	10997		167.23	74.033	1	16488000			39025	1338	26557	26651	39503	39503					0.06014029477319127
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENST00000478088.1_1_16:76269257-76269449:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2954711914062	2	518.295299	1034.57605	1.5757	0.00081667	-0.53887	-0.00027929	1.0368	0.00053737	518.2951251845815	33.101	0.68706	33.101	33.003	33.69	0					57	16	5	0	0	0	3.4569E-05	1	12627	12627		199.7	94.958	1	73507000			39026	1338	26557	26651	39504	39504					0.06014029477319127
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENST00000478088.1_1_16:76269257-76269449:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.296142578125	2	518.295299	1034.57605	0.94987	0.00049231	0.15796	8.1872E-05	1.1078	0.00057418	518.2954406845466	32.931	0.55545	32.931	32.805	33.361	0					53	16	5	0	0	0	3.5882E-08	2	11479	11479;11646		214.23	118.04	1	20111000			39027	1338	26557	26651	39505;39506	39505					0.06014029477319127
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENST00000478088.1_1_16:76269257-76269449:-|nuORF	nc|ENSG00000063177|Q07020-2|RPL18	nc|ENSG00000063177|Q07020-2|RPL18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2938232421875	2	518.295299	1034.57605	1.5798	0.00081879	-0.28012	-0.00014519	1.2996	0.0006736	518.2952318238407	33.099	0.74312	33.099	32.956	33.7	0					58	15	6	0	0	0	7.7249E-13	1	12515	12515		229.33	129.95	1	107090000			39028	1338	26557	26651	39507	39507					0.06014029477319127
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.76904296875	2	499.768917	997.523281	0.33429	0.00016707	-0.33406	-0.00016695	0.0002318	1.1584E-07	499.76871002332956	38.978	0.35075	38.978	38.856	39.207	0					55	20	4	0	0	0	0.022525	1	12668	12668		117.81	52.008	1	1050400			39029	3276	26558	26652	39508	39508					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.76812744140625	2	499.768917	997.523281	0.66665	0.00033317	-0.71961	-0.00035964	-0.052966	-2.6471E-05	499.7685577042274	39.315	0.55011	39.315	39.16	39.71	0					63	20	4	0	0	0	0.013878	1	14921	14921		132.76	47.842	1	5249000			39030	3276	26558	26652	39509	39509					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.7689208984375	2	499.768917	997.523281	-1.0356	-0.00051758	1.3613	0.00068036	0.3257	0.00016277	499.7696549411779	39.067	0.3273	39.067	38.956	39.283	0					40	18	3	0	0	0	0.035062	1	13148	13148		104.06	29.802	1	631190			39031	3276	26558	26652	39510	39510					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7694091796875	2	499.768917	997.523281	-0.0021464	-1.0727E-06	-0.023943	-1.1966E-05	-0.02609	-1.3039E-05	499.76891558165363	39.26	0.39456	39.26	39.132	39.527	0					31	13	3	0	0	0	0.032383	1	15418	15418		106.68	34.806	1	1121400			39032	3276	26558	26652	39511	39511					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7691345214844	2	499.768917	997.523281	-0.40178	-0.0002008	0.79446	0.00039704	0.39267	0.00019625	499.7692782331485	39.027	0.31831	39.027	38.932	39.25	0					38	16	3	0	0	0	0.19952	1	13919	13919		61.691	21.119	1	570110			39033	3276	26558	26652	39512	39512					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.768798828125	2	499.768917	997.523281	0.16121	8.0567E-05	-0.29131	-0.00014559	-0.1301	-6.502E-05	499.76875249499244	39.028	0.44577	39.028	38.926	39.372	0					49	23	3	0	0	0	0.02953	1	13922	13922		109.48	45.271	1	947470			39034	3276	26558	26652	39513	39513					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7688293457031	2	499.768917	997.523281	-0.69356	-0.00034662	0.50238	0.00025107	-0.19118	-9.5546E-05	499.7691533686294	39.222	0.63842	39.222	39.079	39.718	0					44	14	5	0	0	0	0.0047071	1	15450	15450		159.28	66.08	1	5205400			39035	3276	26558	26652	39514	39514					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.N129Ifs*10|7|0.31|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.76898193359375	2	499.768917	997.523281	1.0776	0.00053853	-1.1234	-0.00056144	-0.045851	-2.2915E-05	499.7683670488203	39.205	0.63632	39.205	39.064	39.701	0					44	14	4	0	0	0	3.4569E-05	1	15465	15465		199.7	94.958	1	8221500			39036	3276	26558	26652	39515	39515					0.024420714145321654
STFQPANKLNK	11	Unmodified	_STFQPANKLNK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	624.3404541015625	2	624.340769	1246.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.656	1	21.656	21.156	22.156	0								0	0	0	0.033853	1	5998	5998		101.25	26.998	1				39037	3724	26559	26653	39516	39516					0.05351873454787892
STFQPANKLNK	11	Unmodified	_STFQPANKLNK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	624.3410034179688	2	624.340769	1246.66699	0.72398	0.00045201	-1.1229	-0.00070108	-0.39892	-0.00024907	624.3400530966111	21.984	0.13356	21.984	21.898	22.031	0					8	3	3	0	0	0	0.10275	1	7082	7082		89.029	44.652	1	374760			39038	3724	26559	26653	39517	39517					0.05351873454787892
STFQQMWISK	10	Unmodified	_STFQQMWISK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000431536.1_1_1:78239597-78239909:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000441772.1_1_11:1824121-1824694:-|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000403258.1_1_6:88985645-88985837:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	628.310546875	2	628.310623	1254.60669	0.13208	8.2988E-05	-0.41996	-0.00026387	-0.28788	-0.00018088	628.3106046505734	42.584	0.37728	42.584	42.473	42.85	0					29	10	5	0	0	0	0.0043426	1	16981	16981		167.93	108	1	963100			39039	1545;6995;2493;7397;7857	26560	26654	39518	39518					-0.010425601999486389
STFRDTSV	8	Unmodified	_STFRDTSV_					0	0	0		ENST00000562955.2_2_1:43917983-43918262:+|nuORF	ENST00000562955.2_2_1:43917983-43918262:+|nuORF	ENST00000562955.2_2_1:43917983-43918262:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.724365234375	2	456.724707	911.43486	-0.6126	-0.00027979	0.015707	7.1737E-06	-0.59689	-0.00027262	456.72468419997665	24.939	0.33402	24.939	24.726	25.06	0					21	8	3	0	0	0	0.37378	1	8465	8465		73.975	8.1716	1	635650			39040	10729	26561	26655	39519	39519					-0.02439968895942002
STFRESFKK	9	Unmodified	_STFRESFKK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.2049560546875	3	377.204862	1128.59276	0.51364	0.00019375	-0.32673	-0.00012325	0.18691	7.0502E-05	377.20474540011264	19.495	0.10458	19.495	19.431	19.535	0					5	3	2	0	0	0	0.40353	1	5061	5061		41.427	8.6142	1	107450			39041	11433	26562	26656	39520	39520					0.03360530363283942
STFRESFKK	9	Unmodified	_STFRESFKK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.20477294921875	3	377.204862	1128.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.849	1	19.849	19.349	20.349	0								0	0	0	0.14211	1	6061	6061		61.691	13.732	1				39042	11433	26562	26656	39521	39521					0.03360530363283942
STFRESFKK	9	Unmodified	_STFRESFKK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	377.2047424316406	3	377.204862	1128.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.608	1	19.608	19.108	20.108	0								0	0	0	0.26578	1	5358	5358		41.427	7.2541	1				39043	11433	26562	26656	39522	39522					0.03360530363283942
STFRESFKK	9	Unmodified	_STFRESFKK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.20477294921875	3	377.204862	1128.59276	-0.41714	-0.00015735	0.18475	6.9689E-05	-0.23238	-8.7657E-05	377.2048784332607	19.749	0.42064	19.749	19.639	20.06	0					15	8	4	0	0	0	0.36135	1	6149	6149		45.022	7.2107	1	1347400			39044	11433	26562	26656	39523	39523					0.03360530363283942
STFRESFKK	9	Unmodified	_STFRESFKK_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.2047424316406	3	377.204862	1128.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.756	1	19.756	19.256	20.256	0								0	0	0	0.045272	1	6163	6163		88.177	29.931	1				39045	11433	26562	26656	39524	39524					0.03360530363283942
STFRGLMK	8	Unmodified	_STFRGLMK_					0	0	0		ENSG00000171303|ENST00000302909|KCNK3	ENSG00000171303|ENST00000302909|KCNK3	ENSG00000171303|ENST00000302909|KCNK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.260498046875	2	470.257662	938.500772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.983	1	32.983	32.483	33.483	0								0	0	0	1.7419	1	11046	11046		42.474	3.2216	1				39046	6289	26563	26657	39525	39525					0.029061487452622714
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7581481933594	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.029	1	28.029	27.529	28.529	0								0	0	0	0.0124	1	9860	9860		107.01	8.3781	1				39047	5522	26564	26658	39526	39526					0.01933481034848228
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.75823974609375	2	482.758549	963.502546	-1.2953	-0.0006253	-1.642	-0.00079267	-2.9372	-0.001418	482.7588320398039	27.812	0.44928	27.812	27.706	28.155	0					34	16	3	0	0	0	0.33044	1	8892	8892		47.657	3.2801	1	185710			39048	5522	26564	26658	39527	39527					0.01933481034848228
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7581481933594	2	482.758549	963.502546	0.68334	0.00032989	-4.0507	-0.0019555	-3.3674	-0.0016256	482.7579771328514	28.126	1.0771	28.126	27.355	28.432	0					53	22	4	0	0	0	0.037924	1	10245	10245		101.25	23.935	1	993480			39049	5522	26564	26658	39528	39528					0.01933481034848228
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7580871582031	2	482.758549	963.502546	-0.27783	-0.00013413	-2.0781	-0.0010032	-2.356	-0.0011374	482.75832666846276	27.867	0.59438	27.867	27.616	28.21	0					19	14	2	0	0	0	0.13267	1	9165	9165		71.877	11.759	1	210350			39050	5522	26564	26658	39529	39529					0.01933481034848228
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7586975097656	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.987	1	27.987	27.487	28.487	0								0	0	0	0.0124	1	10085	10085		107.01	42.8	1				39051	5522	26564	26658	39530	39530					0.01933481034848228
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7581481933594	2	482.758549	963.502546	0.88957	0.00042945	-3.0289	-0.0014622	-2.1393	-0.0010328	482.7580677306188	28.059	0.66415	28.059	27.695	28.359	0					20	13	2	0	0	0	0.032052	1	10104	10104		107.01	39.514	1	1050100			39052	5522	26564	26658	39531	39531					0.01933481034848228
STFSEIFKK	9	Unmodified	_STFSEIFKK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.7964477539062	2	543.795132	1085.57571	1.1588	0.00063016	-0.30216	-0.00016431	0.85667	0.00046585	543.7952134004115	34.769	0.19992	34.769	34.701	34.901	0					12	9	2	0	0	0	0.41113	1	11382	11382		40.778	7.9657	1	69644			39053	5628	26565	26659	39532	39532					0.036346097574551095
STFSEIFKK	9	Unmodified	_STFSEIFKK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7952880859375	2	543.795132	1085.57571	0.35067	0.00019069	0.03213	1.7472E-05	0.3828	0.00020816	543.7951134665478	35.03	0.39049	35.03	34.838	35.228	0					23	10	3	0	0	0	0.1424	1	13109	13109		69.628	21.97	1	485220			39054	5628	26565	26659	39533	39533					0.036346097574551095
STFSEIFKK	9	Unmodified	_STFSEIFKK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7957763671875	2	543.795132	1085.57571	-1.4915	-0.00081108	2.0834	0.001133	0.59192	0.00032188	543.7963918372687	34.814	0.31483	34.814	34.637	34.952	0					16	11	2	0	0	0	0.48389	1	12358	12358		34.173	23.907	1	101820			39055	5628	26565	26659	39534	39534					0.036346097574551095
STFSGLAKHK	10	Unmodified	_STFSGLAKHK_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2987060546875	2	538.298373	1074.58219	0.81577	0.00043913	0.15221	8.1936E-05	0.96799	0.00052107	538.298254976083	19.129	0.14169	19.129	19.054	19.196	0					7	4	2	0	0	0	0.25899	1	4897	4897		51.193	13.381	1	209220			39056	1096	26566	26660	39535	39535					0.04788547708835722
STFSGLAKHK	10	Unmodified	_STFSGLAKHK_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.298583984375	2	538.298373	1074.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.45	1	19.45	18.95	19.95	0								0	0	0	4.1348E-05	1	5870	5870		154.12	109.74	1				39057	1096	26566	26660	39536	39536					0.04788547708835722
STFSGLAKHK	10	Unmodified	_STFSGLAKHK_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2984619140625	2	538.298373	1074.58219	-0.015049	-8.1007E-06	0.99379	0.00053496	0.97874	0.00052686	538.2986577072651	19.113	0.17012	19.113	19.045	19.215	0					9	5	3	0	0	0	0.026945	1	5124	5124		120.87	71.427	1	203840			39058	1096	26566	26660	39537	39537					0.04788547708835722
STFSGLAKHK	10	Unmodified	_STFSGLAKHK_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2986450195312	2	538.298373	1074.58219	0.29843	0.00016064	0.29107	0.00015668	0.5895	0.00031733	538.2985379523994	19.355	0.26346	19.355	19.247	19.511	0					10	5	3	0	0	0	4.0244E-06	1	6113	6113		209.84	143.41	1	2207100			39059	1096	26566	26660	39538	39538					0.04788547708835722
STFSIELF	8	Unmodified	_STFSIELF_					0	0	0			REV__OR6C4|p.F101Lfs*31|1|0.49|ENSG00000179626|chr12:55551523-55551523|T/-|frameshift_variant	REV__OR6C4|p.F101Lfs*31|1|0.49|ENSG00000179626|chr12:55551523-55551523|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2391052246094	2	472.242201	942.469849	-1.4463	-0.00068301	-3.7512	-0.0017715	-5.1975	-0.0024545	472.239633258017	23.249	0.22663	23.249	23.148	23.374	0					11	7	2	0	0	0	0.52345	1	6953	6953		57.811	7.7867	1	173020	+		39060	16784	26567	26661	39539	39539					-0.0036872608799285445
STFSSLVAK	9	Unmodified	_STFSSLVAK_					0	0	0		ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.26068115234375	2	470.260925	938.507297	0.48858	0.00022976	-0.27167	-0.00012775	0.21692	0.00010201	470.26081403288566	33.202	0.23206	33.202	33.095	33.327	0					12	6	3	0	0	0	0.42902	1	12232	12232		39.253	13.679	1	227040			39061	10409	26568	26662	39540	39540					0.0355836517762782
STFSSLVAK	9	Unmodified	_STFSSLVAK_					0	0	0		ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.26031494140625	2	470.260925	938.507297	-0.12527	-5.8911E-05	-0.014973	-7.0412E-06	-0.14025	-6.5953E-05	470.26087560082345	33.178	0.30763	33.178	33.065	33.373	0					17	7	3	0	0	0	0.15163	1	12659	12659		67.494	18.052	1	598600			39062	10409	26568	26662	39541	39541					0.0355836517762782
STFSSLVAK	9	Unmodified	_STFSSLVAK_					0	0	0		ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.2605285644531	2	470.260925	938.507297	-0.21985	-0.00010339	-0.26619	-0.00012518	-0.48604	-0.00022856	470.26079690657264	32.948	0.16159	32.948	32.862	33.024	0					7	4	2	0	0	0	0.27249	1	11520	11520		52.937	20.982	1	148920			39063	10409	26568	26662	39542	39542					0.0355836517762782
STFSSLVAK	9	Unmodified	_STFSSLVAK_					0	0	0		ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	ENST00000529306.5_1_11:502127-506619:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.2605285644531	2	470.260925	938.507297	-0.53825	-0.00025312	-0.084659	-3.9812E-05	-0.62291	-0.00029293	470.2608768760484	33.159	0.2066	33.159	33.059	33.266	0					14	4	4	0	0	0	0.023928	1	12562	12562		115.49	51.287	1	1056700			39064	10409	26568	26662	39543	39543					0.0355836517762782
STFSSSTKK	9	Unmodified	_STFSSSTKK_					0	0	0		ENSG00000165185|ENST00000337530|KIAA1958;nc|ENSG00000165185|Q8N8K9-3|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7525329589844	2	486.753464	971.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.271	1	13.271	12.771	13.771	0								0	0	0	0.3428	1	2726	2726		26.693	5.746	1				39065	5772	26569	26663	39544	39544					0.005488733096171927
STFSTNYR	8	Unmodified	_STFSTNYR_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2303466796875	2	488.230156	974.445759	-0.080648	-3.9375E-05	-0.63836	-0.00031167	-0.71901	-0.00035104	488.23014264844835	25.089	0.17402	25.089	25.023	25.197	0					10	5	3	0	0	0	0.58597	1	7513	7513		51.335	7.2187	1	118170			39066	2650	26570	26664	39545	39545					-0.042485665216759116
STFSTNYR	8	Unmodified	_STFSTNYR_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2298889160156	2	488.230156	974.445759	-1.2485	-0.00060955	0.54176	0.00026451	-0.70673	-0.00034505	488.23037742147653	25.13	0.23196	25.13	25.057	25.289	0					20	7	4	0	0	0	0.39125	1	7770	7770		71.877	15.156	1	811500			39067	2650	26570	26664	39546	39546					-0.042485665216759116
STFSTNYR	8	Unmodified	_STFSTNYR_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2301025390625	2	488.230156	974.445759	0.62042	0.00030291	-1.2249	-0.00059805	-0.60452	-0.00029514	488.22954909430683	25.35	0.51555	25.35	25.239	25.755	0					23	10	4	0	0	0	0.41	1	8995	8995		69.628	21.97	1	3526900			39068	2650	26570	26664	39547	39547					-0.042485665216759116
STFSTNYR	8	Unmodified	_STFSTNYR_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2298583984375	2	488.230156	974.445759	-0.19888	-9.7102E-05	-0.11116	-5.427E-05	-0.31004	-0.00015137	488.23013129396077	25.214	0.2289	25.214	25.128	25.357	0					11	5	3	0	0	0	0.27635	1	7973	7973		90.37	33.649	1	381250			39069	2650	26570	26664	39548	39548					-0.042485665216759116
STFVGTFLV	9	Unmodified	_STFVGTFLV_					0	0	0		GPR26|p.I247V|1|0.31|ENSG00000154478|chr10:123674888-123674888|A/G|missense_variant	GPR26|p.I247V|1|0.31|ENSG00000154478|chr10:123674888-123674888|A/G|missense_variant	GPR26|p.I247V|1|0.31|ENSG00000154478|chr10:123674888-123674888|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.1798095703125	3	324.179654	969.517133	0.53463	0.00017332	-0.25312	-8.2055E-05	0.28152	9.1262E-05	324.179674469489	17.211	1.7956	17.211	17.007	18.803	0					107	43	3	0	0	0	0.55282	1	4788	4788		26.693	6.6961	1	1410500			39070	11162	26571	26665	39549	39549					0.03115553182988151
STFVLQKKG	9	Unmodified	_STFVLQKKG_					0	0	0		ENST00000560105.1_1_15:23062266-23086303:-|nuORF;ENSG00000170113|ENST00000337435|NIPA1	ENST00000560105.1_1_15:23062266-23086303:-|nuORF	ENST00000560105.1_1_15:23062266-23086303:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5345153808594	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.199	1	49.199	48.699	49.699	0								0	0	0	0.35507	1	18519	18519		18.262	0	1				39071	6210	26572	26666	39550	39550					0.07810333339944009
STGEEVAMRK	10	Unmodified	_STGEEVAMRK_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.2775268554688	2	554.27678	1106.53901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.741	1	17.741	17.241	18.241	0								0	0	0	0.27575	1	4290	4290		54.722	15.47	1				39072	5385	26573	26667	39551	39551					-0.010000101307468867
STGEEVAMRK	10	Unmodified	_STGEEVAMRK_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.277099609375	2	554.27678	1106.53901	0.60605	0.00033592	0.41044	0.0002275	1.0165	0.00056342	554.2770623747973	18.033	0.32773	18.033	17.926	18.254	0					12	7	3	0	0	0	0.30252	1	5208	5208		66.962	1.4965	1	754050			39073	5385	26573	26667	39552	39552					-0.010000101307468867
STGGAHASLTH	11	Unmodified	_STGGAHASLTH_					0	0	0		ENST00000482878.5_1_16:772872-773550:-|nuORF;ENST00000481804.5_1_16:772680-773505:-|nuORF	ENST00000482878.5_1_16:772872-773550:-|nuORF	ENST00000482878.5_1_16:772872-773550:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7516479492188	2	519.751787	1037.48902	1.6559	0.00086065	-2.6191	-0.0013613	-0.96325	-0.00050065	519.7507534073883	26.469	0.31828	26.469	26.359	26.677	0					17	6	4	0	0	0	0.35352	1	9468	9468		56.721	1.2168	1	1850300			39074	9961	26574	26668	39553	39553					-0.028223767443932957
STGGHPVVK	9	Unmodified	_STGGHPVVK_					0	0	0		NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant;nc|ENSG00000072736|Q12968-5|NFATC3;nc|ENSG00000072736|Q12968-6|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.24542236328125	2	441.245609	880.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.823	1	13.823	13.323	14.323	0								0	0	0	0.1633	1	2893	2893		56.721	1.2168	1				39075	1498	26575	26669	39554	39554					0.031646315832290384
STGGHPVVK	9	Unmodified	_STGGHPVVK_					0	0	0		NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant;nc|ENSG00000072736|Q12968-5|NFATC3;nc|ENSG00000072736|Q12968-6|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.24530029296875	2	441.245609	880.476666	0.52816	0.00023305	-1.189	-0.00052464	-0.66084	-0.00029159	441.2450308055869	14.033	0.15925	14.033	13.974	14.133	0					6	3	2	0	0	0	0.27249	1	3566	3566		52.937	1.6012	1	1344400			39076	1498	26575	26669	39555	39555					0.031646315832290384
STGGLLAAKG	10	Unmodified	_STGGLLAAKG_					0	0	0			REV__CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant	REV__CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7530517578125	2	437.753267	873.491981	0.61248	0.00026812	-1.2024	-0.00052634	-0.58989	-0.00025822	437.7525557418812	21.616	0.19135	21.616	21.518	21.71	0					7	4	3	0	0	0	0.39566	1	6908	6908		56.721	3.3696	1	825080	+		39077	12415	26576	26670	39556	39556					0.050174983804254225
STGGRTTITTK	11	Unmodified	_STGGRTTITTK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.3109741210938	2	561.809302	1121.60405	1.2734	0.00071541	0.24376	0.00013694	1.5172	0.00085235	561.8095340579458	15.145	0.13955	15.145	15.065	15.204	0					15	5	4	0	0	0	0.12878	1	3227	3227		82.831	24.049	1	649520			39078	3372	26577	26671	39557	39557					0.04811307666727771
STGGRTTITTK	11	Unmodified	_STGGRTTITTK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.8098754882812	2	561.809302	1121.60405	0.4702	0.00026416	0.99042	0.00055643	1.4606	0.00082059	561.8099311949338	15.447	0.33833	15.447	15.358	15.697	0					16	8	4	0	0	0	0.11438	1	3976	3976		86.189	32.838	1	3596100			39079	3372	26577	26671	39558	39558					0.04811307666727771
STGGRTTITTK	11	Unmodified	_STGGRTTITTK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.8103637695312	2	561.809302	1121.60405	0.12875	7.2333E-05	0.70144	0.00039408	0.83019	0.00046641	561.8097227285948	15.159	0.092459	15.159	15.115	15.208	0					11	4	3	0	0	0	0.056425	1	3397	3397		102.06	39.954	1	286510			39080	3372	26577	26671	39559	39559					0.04811307666727771
STGGRTTITTK	11	Unmodified	_STGGRTTITTK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.81005859375	2	561.809302	1121.60405	0.018649	1.0477E-05	1.1609	0.00065222	1.1796	0.0006627	561.8100883348677	15.408	0.21118	15.408	15.306	15.517	0					10	4	3	0	0	0	0.2472	1	4217	4217		68.626	3.1604	1	3022400			39081	3372	26577	26671	39560	39560					0.04811307666727771
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.8662109375	3	364.86607	1091.57638	0.093649	3.4169E-05	-0.056884	-2.0755E-05	0.036765	1.3414E-05	364.86598506640513	32.818	0.24209	32.818	32.723	32.965	0					22	9	3	0	0	0	0.60076	1	10631	10631		46.457	19.764	1	151570			39082	4177	26578	26672	39561	39561					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7958984375	2	546.795466	1091.57638	1.8578	0.0010159	-1.4998	-0.00082007	0.35807	0.00019579	546.7947132553318	33.087	0.29387	33.087	33.057	33.351	0					12	8	2	0	0	0	0.15878	1	12216	12216		85.161	30.385	1	493660			39083	4177	26578	26672	39562	39562					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.8660583496094	3	364.86607	1091.57638	0.4758	0.0001736	-0.58991	-0.00021524	-0.11411	-4.1634E-05	364.8658855161607	33.081	0.56866	33.081	32.969	33.538	0					28	15	2	0	0	0	0.49411	1	12194	12194		58.246	25.496	1	2025100			39084	4177	26578	26672	39563	39563					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7957763671875	2	546.795466	1091.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.852	1	32.852	32.352	33.352	0								0	0	0	0.3639	1	10991	10991		40.778	9.2484	1				39085	4177	26578	26672	39564	39564					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7957763671875	2	546.795466	1091.57638	0.7887	0.00043126	-0.05951	-3.254E-05	0.72919	0.00039872	546.7954211927886	33.071	0.44327	33.071	32.974	33.418	0					21	10	3	0	0	0	0.31613	1	12615	12615		65.465	25.407	1	534070			39086	4177	26578	26672	39565	39565					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.86602783203125	3	364.86607	1091.57638	0.48337	0.00017637	-0.60965	-0.00022244	-0.12628	-4.6077E-05	364.86574735575255	33.086	0.44148	33.086	32.946	33.388	0					27	10	5	0	0	0	0.62235	1	12621	12621		51.528	28.948	1	569700			39087	4177	26578	26672	39566	39566					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2965698242188	2	546.795466	1091.57638	1.9649	0.0010744	-1.1708	-0.00064018	0.79411	0.00043422	546.7946827788028	32.858	0.2491	32.858	32.774	33.024	0					8	6	2	0	0	0	0.49411	1	11467	11467		45.972	8.8131	1	84189			39088	4177	26578	26672	39567	39567					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-2|SDCBP	nc|ENSG00000137575|O00560-2|SDCBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7952880859375	2	546.795466	1091.57638	0.54538	0.00029821	0.73532	0.00040207	1.2807	0.00070028	546.7957891035422	33.027	0.48935	33.027	32.926	33.415	0					17	10	2	0	0	0	0.097781	1	12500	12500		95.815	44.622	1	661520			39089	4177	26578	26672	39568	39568					0.034254491971978496
STGKRVSTCP	10	Carbamidomethyl (C)	_STGKRVSTC(Carbamidomethyl (C))P_	STGKRVSTC(1)P		STGKRVSTC(44)P		0	1	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.85498046875	3	364.853724	1091.53934	3.1461	0.0011479	0.10399	3.7942E-05	3.2501	0.0011858	364.8538488518211	29.625	0.61576	29.625	29.515	30.131	0					34	12	5	0	0	0	0.50881	1	10884	10884		44.377	10.456	1	4054600			39090	83	26579	26673	39569	39569	3				-0.002765904108855466
STGKTGRAGDQ	11	Unmodified	_STGKTGRAGDQ_					0	0	0		ENST00000479650.5_1_9:140459535-140473096:-|nuORF;ENSG00000148399|ENST00000277540|DPH7	ENST00000479650.5_1_9:140459535-140473096:-|nuORF	ENST00000479650.5_1_9:140459535-140473096:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.84893798828125	3	359.847626	1076.52105	0.72646	0.00026141	2.4432	0.00087916	3.1696	0.0011406	359.8485545926789	13.154	0.15979	13.154	13.078	13.238	0					7	4	2	0	0	0	0.76133	1	2940	2940		21.78	0.094677	1	131960			39091	4829	26580	26674	39570	39570					-0.014150090612474742
STGLCSWCQ	9	Unmodified	_STGLCSWCQ_					0	0	0		ENST00000582176.1_1_3:127800095-127800410:-|nuORF	ENST00000582176.1_1_3:127800095-127800410:-|nuORF	ENST00000582176.1_1_3:127800095-127800410:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.6986999511719	2	492.69932	983.384087	-0.072347	-3.5645E-05	-0.63263	-0.00031169	-0.70497	-0.00034734	492.69911054893583	20.794	0.2584	20.794	20.661	20.92	0					17	9	2	0	0	0	0.37197	1	5603	5603		44.117	3.3386	1	146280			39092	10876	26581	26675	39571	39571					-0.10826957536824011
STGLLNVPT	9	Unmodified	_STGLLNVPT_					0	0	0			REV__CCSER2|p.G33E|1|0.11|ENSG00000107771|chr10:84371150-84371150|G/A|missense_variant	REV__CCSER2|p.G33E|1|0.11|ENSG00000107771|chr10:84371150-84371150|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2532958984375	2	451.2531	900.491647	0.44708	0.00020175	-0.73699	-0.00033257	-0.28991	-0.00013082	451.2528172948117	21.366	0.20412	21.366	21.261	21.465	0					6	4	2	0	0	0	0.27249	1	6193	6193		52.937	1.6012	1	64602	+		39093	12377	26582	26676	39572	39572					0.03742078660570769
STGLMLFL	8	Unmodified	_STGLMLFL_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.2455749511719	2	441.243689	880.472826	2.6293	0.0011602	1.7674	0.00077986	4.3968	0.00194	441.244434591402	14.035	0.20599	14.035	13.931	14.137	0					8	4	2	0	0	0	0.61433	1	3410	3410		46.766	2.2354	1	653640	+		39094	22138	26583	26677	39573	39573					0.027808257651599888
STGMNLLKL	9	Unmodified	_STGMNLLKL_					0	0	0		nc|ENSG00000158201|Q8WU67-2|ABHD3	nc|ENSG00000158201|Q8WU67-2|ABHD3	nc|ENSG00000158201|Q8WU67-2|ABHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2793273925781	2	488.778428	975.542302	-0.51698	-0.00025269	-0.3287	-0.00016066	-0.84568	-0.00041335	488.778406296441	31.479	0.21636	31.479	31.37	31.586	0					15	4	4	0	0	0	0.13267	1	11761	11761		71.877	5.4482	1	591340			39095	11606	26584	26678	39574	39574					0.05355284713925812
STGNMVISK	9	Unmodified	_STGNMVISK_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7447509765625	2	468.744585	935.474617	0.026083	1.2226E-05	-1.0144	-0.0004755	-0.98832	-0.00046327	468.744134219035	22.06	0.18446	22.06	21.954	22.138	0					12	5	3	0	0	0	0.36135	1	6161	6161		45.022	13.067	1	261200			39096	2191	26585	26679	39575	39575					0.004298347831195315
STGNMVISK	9	Unmodified	_STGNMVISK_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.74420166015625	2	468.744585	935.474617	0.26866	0.00012593	-1.3752	-0.00064461	-1.1065	-0.00051868	468.744072885848	22.39	0.23339	22.39	22.251	22.485	0					15	5	4	0	0	0	0.014648	1	7256	7256		131.12	20.996	1	2332000			39097	2191	26585	26679	39576	39576					0.004298347831195315
STGNMVISK	9	Unmodified	_STGNMVISK_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.74420166015625	2	468.744585	935.474617	-0.12754	-5.9784E-05	-0.82703	-0.00038767	-0.95457	-0.00044745	468.7442723318082	22.277	0.21346	22.277	22.17	22.384	0					11	4	3	0	0	0	0.0079272	1	7503	7503		145.46	60.545	1	2086000			39098	2191	26585	26679	39577	39577					0.004298347831195315
STGNMVISK	9	Unmodified	_STGNMVISK_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7450256347656	2	468.744585	935.474617	-0.20957	-9.8235E-05	-0.3963	-0.00018576	-0.60586	-0.000284	468.744474541565	22.136	0.14068	22.136	22.046	22.187	0					8	3	3	0	0	0	0.026656	1	6529	6529		112.3	40.418	1	249350			39099	2191	26585	26679	39578	39578					0.004298347831195315
STGNMVISK	9	Unmodified	_STGNMVISK_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7442321777344	2	468.744585	935.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.147	1	22.147	21.647	22.647	0								0	0	0	0.0076242	1	6547	6547		112.3	40.418	1				39100	2191	26585	26679	39579	39579					0.004298347831195315
STGNMVISK	9	Unmodified	_STGNMVISK_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.744384765625	2	468.744585	935.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.267	1	22.267	21.767	22.767	0								0	0	0	0.0071466	1	7380	7380		174.86	52.689	1				39101	2191	26585	26679	39580	39580					0.004298347831195315
STGNMVISK	9	Unmodified	_STGNMVISK_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7442321777344	2	468.744585	935.474617	0.56497	0.00026482	-1.5176	-0.00071135	-0.95259	-0.00044652	468.743957909799	22.278	0.21426	22.278	22.173	22.387	0					10	4	3	0	0	0	0.046074	1	7395	7395		96.665	49.008	1	1756600			39102	2191	26585	26679	39581	39581					0.004298347831195315
STGPITKPK	9	Unmodified	_STGPITKPK_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant;HERC1|p.V1879Lfs*26|1|0.37|ENSG00000103657|chr15:63694004-63694004|T/-|frameshift_variant;HERC1|p.M2237*|1|0.39|ENSG00000103657|chr15:63678206-63678206|T/-|frameshift_variant;HERC1|p.C2300Hfs*14|1|0.44|ENSG00000103657|chr15:63678017-63678018|AA/-|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.77679443359375	2	464.776742	927.538931	-0.68873	-0.00032011	0.35328	0.0001642	-0.33545	-0.00015591	464.77692240264383	16.272	0.1381	16.272	16.18	16.318	0					5	3	2	0	0	0	0.02953	1	4380	4380		109.48	48.506	1	357890			39103	2254	26586	26680	39582	39582					0.07226357931563143
STGPTLQAR	9	Unmodified	_STGPTLQAR_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7535400390625	2	465.753798	929.493044	0.47912	0.00022315	-0.68262	-0.00031793	-0.2035	-9.478E-05	465.7537042153893	21.016	0.53251	21.016	20.655	21.187	0					17	12	2	0	0	0	0.15163	1	6607	6607		67.494	12.717	1	878230			39104	500	26587	26681	39583	39583					0.025477127493331864
STGPTLQAR	9	Unmodified	_STGPTLQAR_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7532043457031	2	465.753798	929.493044	-0.86832	-0.00040442	-1.8287	-0.00085172	-2.697	-0.0012561	465.7530635332777	20.728	0.29883	20.728	20.525	20.823	0					13	9	2	0	0	0	0.41958	1	5844	5844		40.058	4.8575	1	176520			39105	500	26587	26681	39584	39584					0.025477127493331864
STGPTLQAR	9	Unmodified	_STGPTLQAR_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.75372314453125	2	465.753798	929.493044	0.67213	0.00031305	-2.2934	-0.0010681	-1.6212	-0.00075509	465.75275408603994	20.921	0.36549	20.921	20.713	21.078	0					12	7	2	0	0	0	0.14578	1	6871	6871		68.846	10.616	1	776330			39106	500	26587	26681	39585	39585					0.025477127493331864
STGQPCILLK	10	Unmodified	_STGQPCILLK_					0	0	0		nc|ENSG00000101892|Q9UN42-2|ATP1B4;ENSG00000101892|ENST00000218008|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2994384765625	2	530.296985	1058.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.17	1	14.17	13.67	14.67	0								0	0	0	0.34115	1	3464	3464		44.377	10.205	1				39107	2139	26588	26682	39586	39586					0.052469562596797914
STGREQGRHSK	11	Unmodified	_STGREQGRHSK_					0	0	0			REV__KRBA1|p.I622Sfs*4|1|0.09|ENSG00000133619|chr7:149730195-149730195|G/-|frameshift_variant	REV__KRBA1|p.I622Sfs*4|1|0.09|ENSG00000133619|chr7:149730195-149730195|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.8822937011719	3	414.881441	1241.62249	1.0378	0.00043055	0.90855	0.00037694	1.9463	0.00080749	414.88183184600234	21.056	0.17691	21.056	20.97	21.147	0					12	4	4	0	0	0	0.75314	1	6644	6644		22.562	1.7244	1	867550	+		39108	14713	26589	26683	39587	39587					0.011348623613230302
STGRPIGSYQ	10	Unmodified	_STGRPIGSYQ_					0	0	0			REV__ENST00000300452.7_1_9:131096069-131096330:+|nuORF	REV__ENST00000300452.7_1_9:131096069-131096330:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2705688476562	2	533.269813	1064.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.925	1	21.925	21.425	22.425	0								0	0	0	0.4201	1	6375	6375		23.523	0.48021	1		+		39109	18198	26590	26684	39588	39588					-0.004609195675357114
STGRPLGTTK	10	Unmodified	_STGRPLGTTK_					0	0	0		nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.86102294921875	3	339.861096	1016.56146	0.52921	0.00017986	-0.75232	-0.00025568	-0.22312	-7.5828E-05	339.8609911790267	15.369	0.25763	15.369	15.259	15.517	0					12	5	3	0	0	0	0.65051	1	4198	4198		28.081	1.3886	1	225160			39110	6869	26591	26685	39589	39589					0.05383957329183886
STGRPLGTTK	10	Unmodified	_STGRPLGTTK_					0	0	0		nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2885437011719	2	509.288005	1016.56146	1.3433	0.00068415	-0.84243	-0.00042904	0.50091	0.00025511	509.28752728276993	15.306	0.26741	15.306	15.146	15.414	0					15	5	4	0	0	0	0.14417	1	4039	4039		84.817	18.388	1	1104700			39111	6869	26591	26685	39590	39590					0.05383957329183886
STGRVVGVLL	10	Unmodified	_STGRVVGVLL_					0	0	0		PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant;PCDHGC3|p.N689Ifs*10|6|0.29|ENSG00000240184|chr5:141478175-141478175|A/-|frameshift_variant;nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant	PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.2098083496094	3	334.209836	999.60768	0.65335	0.00021836	-0.51858	-0.00017332	0.13476	4.5039E-05	334.2095829758609	19.668	0.23475	19.668	19.522	19.757	0					16	5	4	0	0	0	0.61187	1	5986	5986		45.022	8.5755	1	1236000			39112	7930	26592	26686	39591	39591					0.10786022231286552
STGSIFSLK	9	Unmodified	_STGSIFSLK_					0	0	0		ENST00000370339.7_1_20:61834750-61835101:-|nuORF;nc|ENSG00000149658|Q9BYJ9-2|YTHDF1	ENST00000370339.7_1_20:61834750-61835101:-|nuORF	ENST00000370339.7_1_20:61834750-61835101:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.2605895996094	2	470.260925	938.507297	-0.62683	-0.00029477	-0.41882	-0.00019695	-1.0456	-0.00049172	470.26070380360767	38.281	0.10832	38.281	38.237	38.346	0					9	5	2	0	0	0	0.46194	1	13698	13698		36.447	7.2972	1	83374			39113	8952	26593	26687	39592	39592					0.0355836517762782
STGTIPKEI	9	Unmodified	_STGTIPKEI_					0	0	0		nc|ENSG00000137070|Q14626-2|IL11RA;ENSG00000137070|ENST00000441545|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.26641845703125	2	473.266207	944.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.506	1	31.506	31.006	32.006	0								0	0	0	0.27939	1	10856	10856		39.253	0	1				39114	4142	26594	26688	39593	39593					0.04338347832049294
STGTSGEKAK	10	Unmodified	_STGTSGEKAK_					0	0	0			REV__ENSG00000165370|ENST00000651716|GPR101	REV__ENSG00000165370|ENST00000651716|GPR101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.24847412109375	2	483.248546	964.482539	0.59454	0.00028731	-0.38832	-0.00018765	0.20623	9.9658E-05	483.2484243885019	14.696	0.25859	14.696	14.616	14.875	0					14	6	3	0	0	0	0.11308	1	3645	3645		93.143	1.878	1	661930	+		39115	16039	26595	26689	39594	39594					-0.0011231469576387099
STGTSGEKAK	10	Unmodified	_STGTSGEKAK_					0	0	0			REV__ENSG00000165370|ENST00000651716|GPR101	REV__ENSG00000165370|ENST00000651716|GPR101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2484436035156	2	483.248546	964.482539	-0.099421	-4.8045E-05	0.065131	3.1475E-05	-0.03429	-1.6571E-05	483.2484842013258	14.655	0.11766	14.655	14.596	14.714	0					4	2	2	0	0	0	0.48965	1	3860	3860		46.457	1.4346	1	411360	+		39116	16039	26595	26689	39595	39595					-0.0011231469576387099
STGVIKLKNN	10	Unmodified	_STGVIKLKNN_					0	0	0		ENST00000552596.1_1_12:49952428-49952862:-|nuORF	ENST00000552596.1_1_12:49952428-49952862:-|nuORF	ENST00000552596.1_1_12:49952428-49952862:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.3216552734375	2	537.319306	1072.62406	3.3456	0.0017977	0.95969	0.00051566	4.3053	0.0023133	537.3200063609605	42.809	0.41466	42.809	42.608	43.023	0					31	12	4	0	0	0	0.48965	1	17079	17079		26.693	0	1	856210			39117	10632	26596	26690	39596	39596					0.09065103397369967
STHEKILEK	9	Unmodified	_STHEKILEK_					0	0	0		nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000492632.5_1_20:9288449-9449247:+|nuORF;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4	nc|ENSG00000101333|Q15147-2|PLCB4	nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.8054809570312	2	542.803488	1083.59242	0.26517	0.00014393	3.1692	0.0017202	3.4343	0.0018642	542.8049594142377	16.266	0.086979	16.266	16.217	16.304	0					5	3	2	0	0	0	0.40353	1	3873	3873		41.427	2.1738	1	44307			39118	2110	26597	26691	39597	39597					0.053971106434119065
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7615051269531	2	502.761623	1003.50869	0.54253	0.00027276	-0.93832	-0.00047175	-0.39579	-0.00019899	502.76109524996724	19.865	0.27736	19.865	19.766	20.043	0					23	8	5	0	0	0	0.085655	1	5200	5200		82.75	13.964	1	2111800			39119	5610	26598	26692	39598	39598					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.5101318359375	3	335.510174	1003.50869	0.3721	0.00012484	-0.71683	-0.0002405	-0.34473	-0.00011566	335.5099758950867	19.865	0.11023	19.865	19.802	19.912	0					8	3	3	0	0	0	0.2873	1	5210	5210		77.318	39.506	1	489810			39120	5610	26598	26692	39599	39599					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.5101623535156	3	335.510174	1003.50869	-0.66931	-0.00022456	0.6839	0.00022945	0.01459	4.895E-06	335.5103653285205	19.903	0.14103	19.903	19.842	19.983	0					11	4	4	0	0	0	0.30951	1	5466	5466		65.465	29.847	1	347240			39121	5610	26598	26692	39600	39600					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7616882324219	2	502.761623	1003.50869	0.062003	3.1173E-05	-0.022393	-1.1258E-05	0.03961	1.9914E-05	502.76160717725475	20.088	0.81959	20.088	19.978	20.798	0					25	16	2	0	0	0	0.0017279	1	6465	6465		176.09	74.486	1	8131300			39122	5610	26598	26692	39601	39601					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7618713378906	2	502.761623	1003.50869	-0.20859	-0.00010487	0.019049	9.577E-06	-0.18954	-9.5294E-05	502.76159816658776	19.94	0.23178	19.94	19.844	20.076	0					13	5	3	0	0	0	0.0080613	1	5503	5503		145.16	75.528	1	1264000			39123	5610	26598	26692	39602	39602					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7615661621094	2	502.761623	1003.50869	0.13361	6.7172E-05	-0.33742	-0.00016964	-0.20381	-0.00010247	502.7614720541358	19.972	0.22637	19.972	19.874	20.1	0					12	5	3	0	0	0	0.063171	1	5515	5515		90.601	22.116	1	1018600			39124	5610	26598	26692	39603	39603					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	335.5100402832031	3	335.510174	1003.50869	-0.041873	-1.4049E-05	-0.33847	-0.00011356	-0.38034	-0.00012761	335.51006826402596	19.972	0.18787	19.972	19.874	20.062	0					9	4	3	0	0	0	0.19605	1	5518	5518		78.264	33.887	1	550970			39125	5610	26598	26692	39604	39604					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7616271972656	2	502.761623	1003.50869	-0.4877	-0.0002452	0.45784	0.00023018	-0.029864	-1.5015E-05	502.76187885262914	20.103	0.86493	20.103	19.995	20.86	0					40	17	3	0	0	0	0.0097668	1	6337	6337		141.52	61.808	1	10079000			39126	5610	26598	26692	39605	39605					0.007079992663648227
STHHTDGLSK	10	Unmodified	_STHHTDGLSK_					0	0	0		SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.765380859375	2	541.764894	1081.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.253	1	13.253	12.753	13.753	0								0	0	0	0.011307	1	2976	2976		101.25	51.219	1				39127	2756	26599	26693	39606	39606					-0.022261075729147706
STHHTDGLSK	10	Unmodified	_STHHTDGLSK_					0	0	0		SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7649536132812	2	541.764894	1081.51524	0.64002	0.00034674	-0.45323	-0.00024555	0.18678	0.00010119	541.7645394244026	13.168	0.11527	13.168	13.111	13.226	0					4	2	2	0	0	0	0.09653	1	3004	3004		96.034	44.841	1	127760			39128	2756	26599	26693	39607	39607					-0.022261075729147706
STHLTQHQK	9	Unmodified	_STHLTQHQK_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2835083007812	2	540.283254	1078.55196	0.27064	0.00014622	0.6903	0.00037296	0.96094	0.00051918	540.2835449287447	12.628	0.096611	12.628	12.563	12.659	0					8	3	3	0	0	0	0.22837	1	2704	2704		58.23	22.612	1	283990			39129	1918	26600	26694	39608	39608					0.01582189043665494
STHLTQHQK	9	Unmodified	_STHLTQHQK_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.283935546875	2	540.283254	1078.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.636	1	12.636	12.136	13.136	0								0	0	0	0.0537	1	2892	2892		85.161	26.379	1				39130	1918	26600	26694	39609	39609					0.01582189043665494
STHQAAIVSK	10	Unmodified	_STHQAAIVSK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-6|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2880249023438	2	521.288005	1040.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.734	1	15.734	15.234	16.234	0								0	0	0	0.35404	1	3474	3474		42.338	8.1655	1				39131	3289	26601	26695	39610	39610					0.04279957329163153
STHQAAIVSK	10	Unmodified	_STHQAAIVSK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-6|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.28857421875	2	521.288005	1040.56146	2.0824	0.0010855	-0.62056	-0.00032349	1.4618	0.00076203	521.2876411798499	16.042	0.14356	16.042	15.991	16.135	0					5	3	2	0	0	0	0.010919	1	4279	4279		139.38	57.142	1	187220			39132	3289	26601	26695	39611	39611					0.04279957329163153
STHQAAIVSK	10	Unmodified	_STHQAAIVSK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-6|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2886352539062	2	521.288005	1040.56146	1.0826	0.00056433	-0.52125	-0.00027172	0.56133	0.00029261	521.2876423426754	16.038	0.16718	16.038	15.93	16.097	0					7	3	3	0	0	0	0.026945	1	4495	4495		120.27	51.486	1	370680			39133	3289	26601	26695	39612	39612					0.04279957329163153
STHQAAIVSK	10	Unmodified	_STHQAAIVSK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-6|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.8611145019531	3	347.861096	1040.56146	0.51454	0.00017899	-0.37291	-0.00012972	0.14163	4.9267E-05	347.8609025207541	16.004	0.11794	16.004	15.946	16.064	0					4	2	2	0	0	0	0.35046	1	4501	4501		73.841	21.674	1	191180			39134	3289	26601	26695	39613	39613					0.04279957329163153
STIAILNSVKK	11	Unmodified	_STIAILNSVKK_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3641357421875	2	587.363713	1172.71287	-0.1964	-0.00011536	0.74112	0.00043531	0.54471	0.00031994	587.364040658868	31.835	0.15888	31.835	31.736	31.894	0					6	3	2	0	0	0	0.41029	1	12057	12057		41.427	0	1	112670			39135	4972	26602	26696	39614	39614					0.13342518637023204
STIASTASLE	10	Unmodified	_STIASTASLE_					0	0	0		ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.25048828125	2	490.250754	978.486955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.893	1	24.893	24.393	25.393	0								0	0	0	0.26105	1	7833	7833		56.721	7.2795	1				39136	8047	26603	26697	39615	39615					-0.003148502728663516
STIATSHPK	9	Unmodified	_STIATSHPK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.25579833984375	2	471.256174	940.497795	-0.4175	-0.00019675	-0.48947	-0.00023067	-0.90697	-0.00042741	471.2559807498667	14.757	0.1467	14.757	14.677	14.823	0					12	6	3	0	0	0	0.17854	1	3088	3088		64.207	3.2353	1	266080			39137	1011	26604	26698	39616	39616					0.025165968920873638
STIATSHPK	9	Unmodified	_STIATSHPK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2560119628906	2	471.256174	940.497795	-0.60473	-0.00028498	-0.059296	-2.7944E-05	-0.66402	-0.00031292	471.25618665889556	15.061	0.2333	15.061	14.967	15.201	0					13	5	4	0	0	0	0.010494	1	3796	3796		139.97	60.519	1	2466100			39138	1011	26604	26698	39617	39617					0.025165968920873638
STIATSHPK	9	Unmodified	_STIATSHPK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2560729980469	2	471.256174	940.497795	-0.816	-0.00038454	0.53583	0.00025252	-0.28016	-0.00013203	471.25642312447195	14.792	0.085681	14.792	14.74	14.825	0					9	4	3	0	0	0	0.047412	1	3258	3258		96.19	27.404	1	183280			39139	1011	26604	26698	39618	39618					0.025165968920873638
STIATSHPK	9	Unmodified	_STIATSHPK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2560729980469	2	471.256174	940.497795	-0.81691	-0.00038497	0.53774	0.00025341	-0.27916	-0.00013156	471.2565005044709	15.019	0.21973	15.019	14.96	15.18	0					8	4	3	0	0	0	0.012915	1	4032	4032		134.81	19.352	1	1051500			39140	1011	26604	26698	39619	39619					0.025165968920873638
STIATSHPK	9	Unmodified	_STIATSHPK_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2562561035156	2	471.256174	940.497795	-2.36	-0.0011122	2.9814	0.001405	0.6214	0.00029284	471.2574305648573	14.824	0.10655	14.824	14.771	14.877	0					11	5	3	0	0	0	0.087861	1	3212	3212		82.241	18.934	1	82142			39141	1011	26604	26698	39620	39620					0.025165968920873638
STICKYYQK	9	Carbamidomethyl (C)	_STIC(Carbamidomethyl (C))KYYQK_	STIC(1)KYYQK		STIC(99)KYYQK		0	1	0		ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	595.7974853515625	2	595.797349	1189.58014	0.13286	7.9156E-05	0.66765	0.00039779	0.80051	0.00047694	595.797798757423	21.132	0.11755	21.132	21.056	21.173	0					6	3	2	0	0	0	0.0406	1	5775	5775		98.629	32.2	1	171320			39142	1552	26605	26699	39621	39621	64				-0.007062490912858266
STICKYYQK	9	Carbamidomethyl (C)	_STIC(Carbamidomethyl (C))KYYQK_	STIC(1)KYYQK		STIC(64)KYYQK		0	1	0		ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.533935546875	3	397.533991	1189.58014	0.91745	0.00036472	-1.239	-0.00049254	-0.32153	-0.00012782	397.5336102276195	21.479	0.14092	21.479	21.392	21.533	0					8	3	3	0	0	0	0.17854	1	6843	6843		64.207	24.149	1	573430			39143	1552	26605	26699	39622	39622	64				-0.007062490912858266
STICKYYQK	9	Carbamidomethyl (C)	_STIC(Carbamidomethyl (C))KYYQK_	STIC(1)KYYQK		STIC(99)KYYQK		0	1	0		ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.7971801757812	2	595.797349	1189.58014	0.15034	8.9571E-05	-0.57806	-0.00034441	-0.42772	-0.00025483	595.7970109111947	21.47	0.27343	21.47	21.38	21.653	0					17	6	4	0	0	0	0.0406	1	6834	6834		98.629	18.175	1	1368600			39144	1552	26605	26699	39623	39623	64				-0.007062490912858266
STICKYYQK	9	Carbamidomethyl (C)	_STIC(Carbamidomethyl (C))KYYQK_	STIC(1)KYYQK		STIC(120)KYYQK		0	1	0		ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.796875	2	595.797349	1189.58014	0.082936	4.9413E-05	-0.71422	-0.00042553	-0.63129	-0.00037612	595.7968833822065	21.397	0.16754	21.397	21.29	21.458	0					10	3	4	0	0	0	0.021961	1	7080	7080		118.74	41.425	1	397840			39145	1552	26605	26699	39624	39624	64				-0.007062490912858266
STICKYYQK	9	Carbamidomethyl (C)	_STIC(Carbamidomethyl (C))KYYQK_	STIC(1)KYYQK		STIC(53)KYYQK		0	1	0		ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	ENSG00000075975|ENST00000170447|MKRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	595.7975463867188	2	595.797349	1189.58014	-1.8222	-0.0010857	1.5411	0.00091817	-0.28116	-0.00016751	595.7985883526958	21.262	0.20513	21.262	21.185	21.39	0					7	4	3	0	0	0	0.27249	1	6131	6131		52.937	6.9847	1	88954			39146	1552	26605	26699	39625	39625	64				-0.007062490912858266
STIDDTISK	9	Unmodified	_STIDDTISK_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2505187988281	2	490.250754	978.486955	0.44488	0.0002181	-0.63778	-0.00031267	-0.1929	-9.4568E-05	490.25041230864696	25.083	0.27361	25.083	24.952	25.226	0					14	6	3	0	0	0	0.014413	1	8514	8514		131.62	30.364	1	1641600			39147	2791	26606	26700	39626	39626					-0.003148502728436142
STIDPAVSK	9	Unmodified	_STIDPAVSK_					0	0	0		ENST00000428288.2_1_7:27565835-27702463:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7520751953125	2	459.250557	916.486562	0.69263	0.00031809	-0.19944	-9.1593E-05	0.49319	0.0002265	459.25046460141095	22.337	0.31138	22.337	22.073	22.384	0					13	9	2	0	0	0	0.19605	1	6261	6261		62.107	16.155	1	110700			39148	2418	26607	26701	39627	39627					0.024977747979505693
STIDPAVSK	9	Unmodified	_STIDPAVSK_					0	0	0		ENST00000428288.2_1_7:27565835-27702463:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.25067138671875	2	459.250557	916.486562	0.15962	7.3305E-05	-0.47972	-0.00022031	-0.3201	-0.00014701	459.2502971015298	22.624	0.43599	22.624	22.398	22.834	0					23	10	4	0	0	0	0.22837	1	7324	7324		58.23	14.113	1	588080			39149	2418	26607	26701	39628	39628					0.024977747979505693
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.7992553710938	2	574.798934	1147.58332	1.0282	0.00059101	-0.48711	-0.00027999	0.54109	0.00031102	574.7987302133267	16.117	0.2452	16.117	15.971	16.216	0					27	10	3	0	0	0	0.20372	1	3576	3576		65.465	23.069	1	338220			39150	3242	26608	26702	39629	39629					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.7990112304688	2	574.798934	1147.58332	-0.10464	-6.0145E-05	0.75277	0.00043269	0.64813	0.00037254	574.799376704058	16.399	0.44013	16.399	16.18	16.62	0					29	10	5	0	0	0	0.052273	1	4404	4404		86.882	7.169	1	3369500			39151	3242	26608	26702	39630	39630					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.799072265625	2	574.798934	1147.58332	-0.17481	-0.00010048	0.14768	8.4889E-05	-0.027122	-1.559E-05	574.7991117446279	16.118	0.098856	16.118	16.031	16.13	0					5	3	2	0	0	0	0.64768	1	3796	3796		29.551	9.554	1	66662			39152	3242	26608	26702	39631	39631					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.7990112304688	2	574.798934	1147.58332	-0.20788	-0.00011949	0.52622	0.00030247	0.31833	0.00018298	574.7992187841971	16.355	0.21695	16.355	16.196	16.413	0					9	4	3	0	0	0	0.063263	1	4647	4647		81.525	81.525	1	396670			39153	3242	26608	26702	39632	39632					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.7998657226562	2	574.798934	1147.58332	-1.5218	-0.00087475	2.5925	0.0014902	1.0707	0.00061544	574.8006697124597	16.151	0.27419	16.151	15.985	16.259	0					20	8	3	0	0	0	0.056454	1	3736	3736		84.817	22.71	1	312890			39154	3242	26608	26702	39633	39633					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.534912109375	3	383.535048	1147.58332	0.59737	0.00022911	-1.2726	-0.0004881	-0.67525	-0.00025898	383.534682882493	16.342	0.36725	16.342	16.131	16.499	0					17	7	3	0	0	0	0.59204	1	4495	4495		37.508	4.7576	1	558750			39155	3242	26608	26702	39634	39634					0.015427172870886352
STIDPSSVMVL	11	Unmodified	_STIDPSSVMVL_					0	0	0		SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant;ENSG00000206072|ENST00000544088|SERPINB11	SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.5345153808594	3	383.533768	1147.57948	-0.14089	-5.4038E-05	2.4313	0.00093249	2.2904	0.00087845	383.5346133155146	16.129	0.13663	16.129	16.069	16.206	0					6	4	2	0	0	0	0.575	1	3752	3752		38.754	7.1193	1	38510			39156	7764	26609	26703	39635	39635					0.01158911469042323
STIDPSSVMVL	11	Unmodified	_STIDPSSVMVL_					0	0	0		SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant;ENSG00000206072|ENST00000544088|SERPINB11	SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.7991333007812	2	574.797014	1147.57948	3.3309	0.0019146	0.35743	0.00020545	3.6883	0.00212	574.7972925099749	16.325	0.51933	16.325	16.063	16.583	0					28	10	4	0	0	0	0.15663	1	4484	4484		62.107	3.3255	1	2828800			39157	7764	26609	26703	39636	39636					0.01158911469042323
STIEFKNMLK	10	Unmodified	_STIEFKNMLK_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;RPRD2|p.P1275Lfs*138|1|0.15|ENSG00000163125|chr1:150472768-150472768|C/-|frameshift_variant	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.8285522460938	2	605.828649	1209.64274	-0.4895	-0.00029655	1.5792	0.00095671	1.0897	0.00066015	605.8291337028128	35.695	0.1218	35.695	35.629	35.751	0					5	3	2	0	0	0	0.45669	1	13401	13401		50.034	0.49747	1	88600			39158	5530	26610	26704	39637	39637					0.046308969769143005
STIEIRDK	8	Unmodified	_STIEIRDK_					0	0	0			REV__nc|ENSG00000120253|Q8NFH3-2|NUP43	REV__nc|ENSG00000120253|Q8NFH3-2|NUP43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2693786621094	2	481.269281	960.52401	3.4691	0.0016696	-3.2187	-0.0015491	0.25039	0.00012051	481.2678457456815	13.382	0.099978	13.382	13.333	13.433	0					11	6	3	0	0	0	0.58597	1	2755	2755		51.335	1.8939	1	75762	+		39159	14273	26611	26705	39638	39638					0.04216866063575253
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.8034057617188	2	554.803488	1107.59242	1.3097	0.00072664	-1.0426	-0.00057841	0.26717	0.00014823	554.8028566820557	33.972	0.71412	33.972	33.85	34.564	0					92	31	5	0	0	0	0.0033339	2	11061	11061;11189		166.68	81.518	1	12820000			39160	2107	26612	26706	39639;39640	39639					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.8033447265625	2	554.803488	1107.59242	0.59554	0.00033041	-0.65026	-0.00036077	-0.054722	-3.036E-05	554.8031890089799	34.217	1.508	34.217	34.094	35.602	0					98	39	6	0	0	0	8.3298E-09	3	12712	12712;12877;13037		221.33	105.83	1	57026000			39161	2107	26612	26706	39641;39642;39643	39641					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.8048706054688	2	554.803488	1107.59242	0.13896	7.7097E-05	0.022956	1.2736E-05	0.16192	8.9833E-05	554.8034569384911	34.06	0.72112	34.06	33.94	34.661	0					97	31	5	0	0	0	0.0017279	2	11437	11437;11571		176.09	91.171	1	16598000			39162	2107	26612	26706	39644;39645	39644					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.802978515625	2	554.803488	1107.59242	-0.43201	-0.00023968	0.995	0.00055203	0.56299	0.00031235	554.8038861823784	34.056	0.20497	34.056	33.978	34.183	0					17	8	3	0	0	0	0.01873	1	11447	11447		124.08	59.873	1	373270			39163	2107	26612	26706	39646	39646					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8033447265625	2	554.803488	1107.59242	1.6511	0.00091605	-1.8795	-0.0010428	-0.2284	-0.00012672	554.8025167935305	34.259	0.71296	34.259	34.092	34.805	0					72	18	5	0	0	0	1.004E-13	2	13159	13159;13325		237.81	124.4	1	71482000			39164	2107	26612	26706	39647;39648	39647					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.803955078125	2	554.803488	1107.59242	-0.048239	-2.6763E-05	0.79628	0.00044178	0.74804	0.00041502	554.8040180589321	34.249	0.37401	34.249	34.121	34.495	0					25	9	4	0	0	0	0.00024018	2	13171	13153;13171		190.52	94.327	1	1793500			39165	2107	26612	26706	39649;39650	39650					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.8043212890625	2	554.803488	1107.59242	1.1354	0.0006299	-0.55957	-0.00031045	0.5758	0.00031945	554.8031494992755	33.99	0.65153	33.99	33.89	34.542	0					50	20	4	0	0	0	0.0017279	2	11969	11969;12130		176.09	79.896	1	6391800			39166	2107	26612	26706	39651;39652	39651					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.8038940429688	2	554.803488	1107.59242	-1.0925	-0.00060615	0.99287	0.00055085	-0.099676	-5.53E-05	554.8040162018838	33.989	0.80737	33.989	33.878	34.686	0					78	24	5	0	0	0	0.0017279	2	11963	11963;12123		176.09	88.39	1	14839000			39167	2107	26612	26706	39653;39654	39653					0.0429311064342528
STIFHVQQR	9	Unmodified	_STIFHVQQR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.302734375	2	558.301447	1114.58834	1.292	0.00072133	-0.36131	-0.00020172	0.93069	0.00051961	558.3014136508848	24.576	0.11937	24.576	24.497	24.616	0					5	3	2	0	0	0	0.070005	1	7264	7264		82.241	13.454	1	177520			39168	6634	26613	26707	39655	39655					0.03563065940375054
STIFHVQQR	9	Unmodified	_STIFHVQQR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.302001953125	2	558.301447	1114.58834	0.5333	0.00029774	2.4585	0.0013726	2.9918	0.0016703	558.302102401306	24.861	0.71087	24.861	24.437	25.148	0					31	17	3	0	0	0	0.029571	1	8430	8430		104.06	32.761	1	1471600			39169	6634	26613	26707	39656	39656					0.03563065940375054
STIFHVQQR	9	Unmodified	_STIFHVQQR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.3005981445312	2	558.301447	1114.58834	-0.47489	-0.00026513	1.4043	0.000784	0.92936	0.00051886	558.803982878059	24.616	0.1027	24.616	24.546	24.648	0					6	3	2	0	0	0	0.28897	1	7550	7550		44.117	3.3386	1	99765			39170	6634	26613	26707	39657	39657					0.03563065940375054
STIFHVQQR	9	Unmodified	_STIFHVQQR_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.3016967773438	2	558.301447	1114.58834	-0.1473	-8.2237E-05	3.0002	0.001675	2.8529	0.0015928	558.3019135977826	24.834	0.51149	24.834	24.528	25.04	0					17	10	3	0	0	0	0.061298	1	8751	8751		85.161	28.44	1	620160			39171	6634	26613	26707	39658	39658					0.03563065940375054
STIFQHPSSI	10	Unmodified	_STIFQHPSSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.7898559570312	2	558.787838	1115.56112	3.4696	0.0019388	-0.5098	-0.00028487	2.9598	0.0016539	558.787914879293	18.617	0.64023	18.617	18.489	19.129	0					24	13	4	0	0	0	0.17732	1	5606	5606		82.241	5.4664	1	2232200	+		39172	16839	26614	26708	39659	39659					0.007965376093352461
STIFYYVQK	9	Unmodified	_STIFYYVQK_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.8021240234375	2	574.802957	1147.59136	1.0245	0.00058888	-0.55836	-0.00032095	0.46612	0.00026793	574.8025807169145	39.478	0.29278	39.478	39.384	39.677	0					43	17	3	0	0	0	0.12239	1	12805	12805		74.255	33.477	1	390610			39173	1868	26615	26709	39660	39660					0.02346896274525534
STIFYYVQK	9	Unmodified	_STIFYYVQK_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.8038940429688	2	574.802957	1147.59136	0.058505	3.3629E-05	0.97772	0.000562	1.0362	0.00059563	574.8034163785952	39.598	0.31033	39.598	39.491	39.802	0					43	17	4	0	0	0	0.0406	1	13283	13283		98.629	55.765	1	668920			39174	1868	26615	26709	39661	39661					0.02346896274525534
STIFYYVQK	9	Unmodified	_STIFYYVQK_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.8031616210938	2	574.802957	1147.59136	-0.17301	-9.9448E-05	0.69432	0.0003991	0.52131	0.00029965	574.8032088806834	39.585	0.085709	39.585	39.536	39.622	0					7	4	2	0	0	0	0.48389	1	13291	13291		34.173	3.6689	1	95443			39175	1868	26615	26709	39662	39662					0.02346896274525534
STIFYYVQK	9	Unmodified	_STIFYYVQK_					0	0	0		HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.8029174804688	2	574.802957	1147.59136	-0.21322	-0.00012256	0.78241	0.00044973	0.56918	0.00032717	574.8032018862232	39.788	0.32775	39.788	39.664	39.992	0					24	11	3	0	0	0	0.33044	1	15625	15625		47.657	15.702	1	570660			39176	1868	26615	26709	39663	39663					0.02346896274525534
STIGECQKV	9	Unmodified	_STIGECQKV_					0	0	0			REV__nc|ENSG00000214517|Q9Y570-2|PPME1	REV__nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.73809814453125	2	482.742042	963.469531	0.065586	3.1661E-05	-2.894	-0.0013971	-2.8284	-0.0013654	482.7406691207397	16.493	0.25603	16.493	16.376	16.632	0					18	8	3	0	0	0	0.071197	1	3745	3745		87.754	2.8388	1	851850	+		39177	17581	26616	26710	39664	39664					-0.013664690794939816
STIGETSKK	9	Unmodified	_STIGETSKK_					0	0	0		ENST00000554955.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;ENSG00000100461|ENST00000359890|RBM23	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7608337402344	2	475.761289	949.508025	-0.18394	-8.7511E-05	-0.38288	-0.00018216	-0.56682	-0.00026967	475.7611196202791	13.184	0.26657	13.184	13.132	13.398	0					32	15	3	0	0	0	0.11898	1	2565	2565		75.043	18.322	1	2639900			39178	2033	26617	26711	39665	39665					0.03125159826674917
STIGETSKK	9	Unmodified	_STIGETSKK_					0	0	0		ENST00000554955.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;ENSG00000100461|ENST00000359890|RBM23	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7610168457031	2	475.761289	949.508025	-0.40761	-0.00019392	-0.41774	-0.00019874	-0.82535	-0.00039267	475.7611611051947	13.487	0.77635	13.487	13.367	14.144	0					57	20	5	0	0	0	0.0076184	1	3069	3069		146.79	36.666	1	54649000			39179	2033	26617	26711	39666	39666					0.03125159826674917
STIGETSKK	9	Unmodified	_STIGETSKK_					0	0	0		ENST00000554955.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;ENSG00000100461|ENST00000359890|RBM23	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.76104736328125	2	475.761289	949.508025	-0.48622	-0.00023132	-0.025534	-1.2148E-05	-0.51175	-0.00024347	475.761303860643	13.244	0.13374	13.244	13.194	13.328	0					9	6	2	0	0	0	0.095583	1	2709	2709		80.455	22.225	1	1305200			39180	2033	26617	26711	39667	39667					0.03125159826674917
STIGETSKK	9	Unmodified	_STIGETSKK_					0	0	0		ENST00000554955.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;ENSG00000100461|ENST00000359890|RBM23	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7610778808594	2	475.761289	949.508025	-0.4467	-0.00021252	0.068164	3.243E-05	-0.37853	-0.00018009	475.7613392959422	13.501	0.37222	13.501	13.406	13.778	0					20	8	3	0	0	0	0.012936	1	3286	3286		134.77	24.646	1	8794100			39181	2033	26617	26711	39668	39668					0.03125159826674917
STIGETSKKK	10	Unmodified	_STIGETSKKK_					0	0	0		ENST00000554955.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;ENSG00000100461|ENST00000359890|RBM23	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8090209960938	2	539.808771	1077.60299	0.26199	0.00014142	0.39066	0.00021088	0.65265	0.00035231	539.8089290065038	12.409	0.15455	12.409	12.347	12.502	0					11	5	3	0	0	0	0.078327	1	2607	2607		98.582	45.645	1	1176300			39182	2033	26618	26712	39669	39669					0.06729093297849431
STIGETSKKK	10	Unmodified	_STIGETSKKK_					0	0	0		ENST00000554955.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;ENSG00000100461|ENST00000359890|RBM23	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	ENST00000554955.5_1_14:23375339-23380602:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.8082885742188	2	539.808771	1077.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.186	1	12.186	11.686	12.686	0								0	0	0	0.19118	1	2395	2395		53.089	8.7118	1				39183	2033	26618	26712	39670	39670					0.06729093297849431
STIGETSNR	9	Unmodified	_STIGETSNR_					0	0	0		ENST00000556687.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7377014160156	2	482.738345	963.462138	-1.2971	-0.00062618	0.81266	0.0003923	-0.48448	-0.00023388	482.73871063686033	16.474	0.24471	16.474	16.368	16.613	0					19	7	4	0	0	0	0.0047071	1	3950	3950		159.28	68.499	1	1132200			39184	10666	26619	26713	39671	39671					-0.021054853555710906
STIGETSNR	9	Unmodified	_STIGETSNR_					0	0	0		ENST00000556687.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7383117675781	2	482.738345	963.462138	0.68505	0.0003307	-1.3803	-0.00066634	-0.69527	-0.00033564	482.73766783889386	16.672	0.39798	16.672	16.515	16.913	0					19	8	3	0	0	0	0.00026591	1	4820	4820		190.26	75.676	1	7775900			39185	10666	26619	26713	39672	39672					-0.021054853555710906
STIGETSNR	9	Unmodified	_STIGETSNR_					0	0	0		ENST00000556687.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7377014160156	2	482.738345	963.462138	-0.27783	-0.00013412	-0.31041	-0.00014985	-0.58825	-0.00028397	482.7381417897625	16.519	0.20452	16.519	16.442	16.646	0					12	5	3	0	0	0	0.015496	1	3928	3928		129.42	55.166	1	947390			39186	10666	26619	26713	39673	39673					-0.021054853555710906
STIGETSNR	9	Unmodified	_STIGETSNR_					0	0	0		ENST00000556687.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7374572753906	2	482.738345	963.462138	0.88949	0.00042939	-1.6242	-0.00078404	-0.73466	-0.00035465	482.7374783674599	16.689	0.55859	16.689	16.583	17.141	0					19	11	3	0	0	0	0.00324	1	4658	4658		167.23	66.017	1	3807100			39187	10666	26619	26713	39674	39674					-0.021054853555710906
STIGNTLFPN	10	Unmodified	_STIGNTLFPN_					0	0	0			REV__DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	REV__DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2738037109375	2	532.274564	1062.53457	-1.2682	-0.00067501	-0.046364	-2.4679E-05	-1.3145	-0.00069969	532.2746407468534	15.668	0.20386	15.668	15.59	15.794	0					16	8	3	0	0	0	0.2538	1	3557	3557		72.879	5.3856	1	262140	+		39188	12665	26620	26714	39675	39675					0.0058084871798200766
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.8042602539062	2	576.80402	1151.59349	0.90127	0.00051986	-0.56997	-0.00032876	0.3313	0.0001911	576.8036470508533	18.864	0.32051	18.864	18.646	18.967	0					22	9	3	0	0	0	0.17498	1	4724	4724		78.264	54.741	1	377870			39189	11604	26621	26715	39676	39676					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.8040161132812	2	576.80402	1151.59349	-0.079544	-4.5881E-05	0.53932	0.00031108	0.45978	0.0002652	576.8043502874306	19.162	0.48863	19.162	18.953	19.441	0					31	11	4	0	0	0	0.0085981	1	5697	5697		120.31	45.263	1	2136500			39190	11604	26621	26715	39677	39677					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	384.8721008300781	3	384.871772	1151.59349	-1.1685	-0.00044971	1.7824	0.00068601	0.61397	0.0002363	384.87223016460763	18.866	0.41262	18.866	18.68	19.093	0					16	13	2	0	0	0	0.6208	1	4985	4985		35.178	7.0967	1	98886			39191	11604	26621	26715	39678	39678					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.8037719726562	2	576.80402	1151.59349	-0.13674	-7.8874E-05	0.66454	0.00038331	0.5278	0.00030443	576.8042300135711	18.842	0.26959	18.842	18.723	18.993	0					14	8	2	0	0	0	0.54277	1	4965	4965		38.754	25.3	1	220540			39192	11604	26621	26715	39679	39679					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.87176513671875	3	384.871772	1151.59349	0.21488	8.2702E-05	-0.078305	-3.0137E-05	0.13658	5.2564E-05	384.87169054142686	19.083	0.41245	19.083	18.818	19.231	0					22	8	4	0	0	0	0.29287	1	5982	5982		63.426	20.562	1	854680			39193	11604	26621	26715	39680	39680					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.8045654296875	2	576.80402	1151.59349	-0.35263	-0.0002034	1.3356	0.00077036	0.98294	0.00056696	576.8046372833827	19.064	0.41306	19.064	18.85	19.264	0					24	8	4	0	0	0	0.063263	1	5924	5924		91.265	29.574	1	1238500			39194	11604	26621	26715	39681	39681					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.8717041015625	3	384.871772	1151.59349	0.57591	0.00022165	-0.63289	-0.00024358	-0.056973	-2.1927E-05	384.8715230019063	19.088	0.41497	19.088	18.83	19.245	0					23	8	4	0	0	0	0.45905	1	5801	5801		47.228	15.593	1	1520500			39195	11604	26621	26715	39682	39682					0.02375325012326357
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.2930297851562	2	563.292953	1124.57135	1.442	0.00081228	-0.18345	-0.00010334	1.2586	0.00070894	563.2928347928566	30.075	0.19518	30.075	29.98	30.175	0					15	7	3	0	0	0	0.046463	1	9537	9537		106.88	45.189	1	208140			39196	5314;9629	26622	26716	39683	39683					0.014051005439114306
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.293212890625	2	563.292953	1124.57135	1.7823	0.0010039	-0.42479	-0.00023928	1.3575	0.00076465	563.2926762959285	30.328	0.25297	30.328	30.245	30.498	0					22	6	5	0	0	0	4.7854E-05	1	10917	10917		162.64	105.91	1	1852300			39197	5314;9629	26622	26716	39684	39684					0.014051005439114306
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.2931518554688	2	563.292953	1124.57135	0.13253	7.4653E-05	0.81959	0.00046167	0.95212	0.00053632	563.2933854905498	30.113	0.20778	30.113	30.014	30.222	0					23	8	4	0	0	0	0.030065	1	9852	9852		114.86	41.979	1	597050			39198	5314;9629	26622	26716	39685	39685					0.014051005439114306
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.2930908203125	2	563.292953	1124.57135	0.908	0.00051147	-0.013473	-7.5895E-06	0.89453	0.00050388	563.2929386388465	30.11	0.24425	30.11	30.018	30.262	0					14	6	4	0	0	0	0.0009855	1	10206	10206		133.99	66.5	1	455470			39199	5314;9629	26622	26716	39686	39686					0.014051005439114306
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.29345703125	2	563.292953	1124.57135	-1.0103	-0.00056909	2.0744	0.0011685	1.0641	0.00059942	563.2940343070308	30.102	0.24805	30.102	30.003	30.251	0					12	6	2	0	0	0	0.0036452	1	10217	10217		128.6	59.815	1	346640			39200	5314;9629	26622	26716	39687	39687					0.014051005439114306
STIKFQMKK	9	Unmodified	_STIKFQMKK_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.8207397460938	2	555.820627	1109.6267	1.3044	0.00072499	-1.2857	-0.0007146	0.01869	1.0388E-05	555.819949841844	21.41	0.20367	21.41	21.341	21.544	0					21	8	4	0	0	0	0.10506	1	5887	5887		71.877	27.761	1	772430			39201	7603	26623	26717	39688	39688					0.07627235530685539
STIKFQMKK	9	Unmodified	_STIKFQMKK_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.82080078125	2	555.820627	1109.6267	0.57713	0.00032078	-0.25731	-0.00014302	0.31982	0.00017776	555.8206991749728	21.734	0.4785	21.734	21.641	22.119	0					29	11	5	0	0	0	0.014413	1	6957	6957		127.46	65.354	1	5716500			39202	7603	26623	26717	39689	39689					0.07627235530685539
STIKFQMKK	9	Unmodified	_STIKFQMKK_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	370.8826904296875	3	370.882843	1109.6267	0.25766	9.5563E-05	-1.0446	-0.00038741	-0.7869	-0.00029185	370.88259211980966	21.634	0.66173	21.634	21.526	22.187	0					35	13	5	0	0	0	0.063171	1	7212	7212		90.601	42.641	1	12540000			39203	7603	26623	26717	39690	39690					0.07627235530685539
STIKFQMKK	9	Unmodified	_STIKFQMKK_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.8206787109375	2	555.820627	1109.6267	-0.10515	-5.8445E-05	0.41384	0.00023002	0.30869	0.00017158	555.8210656172587	21.651	0.31576	21.651	21.542	21.858	0					16	6	4	0	0	0	0.014413	1	7200	7200		115.49	64.159	1	2900100			39204	7603	26623	26717	39691	39691					0.07627235530685539
STIKFQMKK	9	Unmodified	_STIKFQMKK_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.8825988769531	3	370.882843	1109.6267	0.34142	0.00012663	-0.90362	-0.00033514	-0.5622	-0.00020851	370.88254474001775	21.508	0.17416	21.508	21.448	21.623	0					9	4	3	0	0	0	0.30841	1	6257	6257		49.536	15.614	1	231350			39205	7603	26623	26717	39692	39692					0.07627235530685539
STIKFQMKK	9	Unmodified	_STIKFQMKK_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.88275146484375	3	370.882843	1109.6267	-0.26701	-9.9031E-05	-0.32692	-0.00012125	-0.59394	-0.00022028	370.8828529023151	21.645	0.46479	21.645	21.539	22.004	0					24	9	5	0	0	0	0.04067	1	7088	7088		98.582	45.645	1	3728500			39206	7603	26623	26717	39693	39693					0.07627235530685539
STIKFQMKK	9	Oxidation (M)	_STIKFQM(Oxidation (M))KK_		STIKFQM(1)KK		STIKFQM(48)KK	0	0	1		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.214599609375	3	376.214482	1125.62162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.889	1	16.889	16.389	17.389	0								0	0	0	0.22075	1	4098	4098		47.96	12.807	1				39207	7603	26623	26718	39694	39694		305			0.0638293166805397
STIKSIEKK	9	Unmodified	_STIKSIEKK_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.2131652832031	3	345.213246	1032.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.011	1	16.011	15.511	16.511	0								0	0	0	0.25045	1	4254	4254		43.651	15.569	1				39208	1418	26624	26719	39695	39695					0.10290585165853372
STIKSTPSGK	10	Unmodified	_STIKSTPSGK_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2818298339844	2	503.282389	1004.55022	0.072291	3.6383E-05	-2.1042	-0.001059	-2.0319	-0.0010226	503.2812993615788	13.948	0.1165	13.948	13.84	13.957	0					4	2	2	0	0	0	0.36647	1	3501	3501		59.931	20.678	1	144180			39209	3653	26625	26720	39696	39696					0.04813135235053778
STIKVKGTL	9	Unmodified	_STIKVKGTL_					0	0	0		tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.8002624511719	2	473.800217	945.585882	-0.29137	-0.00013805	-0.24485	-0.00011601	-0.53622	-0.00025406	473.8002437768629	20.555	0.083881	20.555	20.512	20.596	0					4	2	2	0	0	0	0.58342	1	5531	5531		23.523	2.5758	1	124250			39210	22904	26626	26721	39697	39697					0.11091217482726279
STILPSKLK	9	Unmodified	_STILPSKLK_					0	0	0			REV__ENSG00000021645|ENST00000335750|NRXN3	REV__ENSG00000021645|ENST00000335750|NRXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.5462951660156	3	329.546337	985.617182	0.38961	0.00012839	-0.51674	-0.00017029	-0.12713	-4.1897E-05	329.5461591061011	27.972	0.93137	27.972	27.617	28.548	0					47	19	3	0	0	0	0.36892	1	10292	10292		44.377	0	1	618700	+		39211	12938	26627	26722	39698	39698					0.12379790516797584
STILVTHEFQA	11	Unmodified	_STILVTHEFQA_					0	0	0			REV__ENSG00000172878|ENST00000315796|METAP1D;REV__ENST00000488581.5_1_2:172944999-172945131:+|nuORF	REV__ENSG00000172878|ENST00000315796|METAP1D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	623.325439453125	2	623.327328	1244.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.981	1	18.981	18.481	19.481	0								0	0	0	0.16638	1	5921	5921		49.536	0	1		+		39212	16479;19694	26628	26723	39699	39699					0.02756764843638848
STIPGIHILK	10	Unmodified	_STIPGIHILK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.5582580566406	3	360.225486	1077.65463	1.4288	0.0005147	-4.1417	-0.0014919	-2.7129	-0.00097725	360.2238187499167	35.575	0.47434	35.575	35.422	35.896	0					26	13	3	0	0	0	0.61238	1	13771	13771		32.751	4.669	1	840680			39213	1085	26629	26724	39700	39700					0.11890881782414908
STIPGIHILK	10	Unmodified	_STIPGIHILK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8348388671875	2	539.834591	1077.65463	0.30535	0.00016484	0.42598	0.00022996	0.73133	0.0003948	539.8348512138471	35.566	0.22889	35.566	35.447	35.676	0					15	6	3	0	0	0	0.030824	1	13782	13782		95.815	37.033	1	370320			39214	1085	26629	26724	39701	39701					0.11890881782414908
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.9148864746094	3	413.915089	1238.72344	0.59639	0.00024686	-0.87982	-0.00036417	-0.28342	-0.00011731	413.91481338947216	25.873	0.71474	25.873	25.744	26.459	0					23	20	2	0	0	0	0.40021	1	7809	7809		51.528	6.5056	1	194910			39215	1307	26630	26725	39702	39702					0.11362501291455374
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	620.3690185546875	2	620.368995	1238.72344	0.1064	6.6009E-05	0.029205	1.8118E-05	0.13561	8.4127E-05	620.3690395750154	26.12	2.9436	26.12	25.986	28.929	0					134	71	4	0	0	0	0.043502	1	8978	8978		101.46	31.832	1	1140500			39216	1307	26630	26725	39703	39703					0.11362501291455374
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.9150695800781	3	413.915089	1238.72344	-1.459	-0.00060389	1.3842	0.00057294	-0.07479	-3.0957E-05	413.9156479333973	25.892	0.90639	25.892	25.76	26.667	0					36	26	2	0	0	0	0.6208	1	8086	8086		35.178	1.0917	1	235060			39217	1307	26630	26725	39704	39704					0.11362501291455374
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	620.3692016601562	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.894	1	25.894	25.394	26.394	0								0	0	0	0.27395	1	8074	8074		46.457	21.938	1				39218	1307	26630	26725	39705	39705					0.11362501291455374
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3692626953125	2	620.368995	1238.72344	0.17618	0.0001093	-0.013097	-8.125E-06	0.16308	0.00010117	620.3689560216098	26.109	3.0531	26.109	26	29.053	0					111	62	3	0	0	0	0.11546	2	9294	9294;10278		77.533	17.415	1	1251000			39219	1307	26630	26725	39706;39707	39706					0.11362501291455374
STIPPHVQK	9	Unmodified	_STIPPHVQK_					0	0	0		TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2;nc|ENSG00000163513|P37173-3|TGFBR2	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7879943847656	2	503.787641	1005.56073	-0.057156	-2.8795E-05	0.70111	0.00035321	0.64395	0.00032441	503.7880147213534	17.295	0.96464	17.295	17.196	18.161	0					33	29	2	0	0	0	0.48389	1	4116	4116		34.173	3.6689	1	196660			39220	5568	26631	26726	39708	39708					0.05817162680136789
STIPPHVQK	9	Unmodified	_STIPPHVQK_					0	0	0		TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2;nc|ENSG00000163513|P37173-3|TGFBR2	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.78753662109375	2	503.787641	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.772	1	18.772	18.272	19.272	0								0	0	0	0.28996	1	4728	4728		37.159	1.9584	1				39221	5568	26631	26726	39709	39709					0.05817162680136789
STIPPHVQK	9	Unmodified	_STIPPHVQK_					0	0	0		TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2;nc|ENSG00000163513|P37173-3|TGFBR2	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7874450683594	2	503.787641	1005.56073	-0.06006	-3.0257E-05	-0.31583	-0.00015911	-0.37588	-0.00018937	503.787457863697	18.036	2.5231	18.036	17.448	19.971	0					144	60	4	0	0	0	0.0792	2	5023	5023;5893		84.916	10.941	1	965660			39222	5568	26631	26726	39710;39711	39710					0.05817162680136789
STIPPHVQK	9	Unmodified	_STIPPHVQK_					0	0	0		TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2;nc|ENSG00000163513|P37173-3|TGFBR2	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7877502441406	2	503.787641	1005.56073	-0.061523	-3.0995E-05	-0.21288	-0.00010725	-0.27441	-0.00013824	503.7874035595443	21.442	1.9808	21.442	20.05	22.031	0					74	45	2	0	0	0	0.17854	1	6656	6656		64.207	14.766	1	743430			39223	5568	26631	26726	39712	39712					0.05817162680136789
STIPPHVQK	9	Unmodified	_STIPPHVQK_					0	0	0		TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2;nc|ENSG00000163513|P37173-3|TGFBR2	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.78759765625	2	503.787641	1005.56073	1.0181	0.0005129	-0.81166	-0.0004089	0.20642	0.00010399	503.7872194298078	17.592	3.7412	17.592	17.435	21.176	0					130	75	4	0	0	0	0.0051608	2	5239	5239;5411		157.33	66.959	1	2854500			39224	5568	26631	26726	39713;39714	39713					0.05817162680136789
STIPSSNKH	9	Unmodified	_STIPSSNKH_					0	0	0		ZNF776|p.F217S|1|0.08|ENSG00000152443|chr19:57753780-57753780|T/C|missense_variant	ZNF776|p.F217S|1|0.08|ENSG00000152443|chr19:57753780-57753780|T/C|missense_variant	ZNF776|p.F217S|1|0.08|ENSG00000152443|chr19:57753780-57753780|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7507019042969	2	485.751256	969.487959	-2.9142	-0.0014156	1.8931	0.0009196	-1.0211	-0.00049599	485.75210557180316	19.819	0.14244	19.819	19.731	19.874	0					5	3	2	0	0	0	0.42902	1	5468	5468		39.253	2.0937	1	252560			39225	23174	26632	26727	39715	39715					0.0019940888671499124
STIPSTAMHTR	11	Unmodified	_STIPSTAMHTR_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-13|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.20458984375	3	401.204645	1200.59211	0.85768	0.0003441	-1.2679	-0.00050871	-0.41027	-0.0001646	401.20424945036314	22.358	0.21523	22.358	22.253	22.468	0					12	4	4	0	0	0	0.44025	1	7566	7566		48.602	10.79	1	3164000			39226	4655	26633	26728	39716	39716					-0.00016632348092571192
STIPSTAMHTR	11	Unmodified	_STIPSTAMHTR_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-13|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.3034057617188	2	601.303329	1200.59211	0.27461	0.00016512	-0.17005	-0.00010225	0.10456	6.2871E-05	601.3032624100136	22.341	0.26416	22.341	22.237	22.501	0					9	5	2	0	0	0	0.00095468	1	7560	7560		139.38	86.445	1	1222900			39227	4655	26633	26728	39717	39717					-0.00016632348092571192
STIPSTAMHTR	11	Unmodified	_STIPSTAMHTR_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-13|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.3032836914062	2	601.303329	1200.59211	-1.8765	-0.0011284	2.2437	0.0013491	0.36715	0.00022077	601.30463455616	22.241	0.14599	22.241	22.144	22.29	0					5	3	2	0	0	0	0.18934	1	6599	6599		58.246	24.074	1	202900			39228	4655	26633	26728	39718	39718					-0.00016632348092571192
STIPSTAMHTR	11	Unmodified	_STIPSTAMHTR_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-13|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2048034667969	3	401.204645	1200.59211	0.48913	0.00019624	-0.57017	-0.00022876	-0.081047	-3.2517E-05	401.20453978319097	22.355	0.21924	22.355	22.27	22.489	0					10	4	3	0	0	0	0.21827	1	7422	7422		72.096	29.231	1	1537000			39229	4655	26633	26728	39719	39719					-0.00016632348092571192
STIPSTAMHTR	11	Unmodified	_STIPSTAMHTR_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-13|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.3034057617188	2	601.303329	1200.59211	3.0964	0.0018619	-2.8303	-0.0017019	0.26609	0.00016	601.3019110631532	22.361	0.26724	22.361	22.254	22.521	0					11	5	3	0	0	0	0.14512	1	7437	7437		80.916	18.809	1	1464500			39230	4655	26633	26728	39720	39720					-0.00016632348092571192
STIPTSRLK	9	Unmodified	_STIPTSRLK_					0	0	0		nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000070961|P20020-5|ATP2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.80047607421875	2	501.800749	1001.58694	-0.55922	-0.00028062	-0.063851	-3.204E-05	-0.62307	-0.00031266	501.8007873049763	21.452	0.21723	21.452	21.341	21.558	0					6	3	2	0	0	0	0.10915	1	7124	7124		77.318	6.0219	1	990070			39231	1463	26634	26729	39721	39721					0.08621431851611305
STIRETSAKQ	10	Unmodified	_STIRETSAKQ_					0	0	0			REV__nc|ENSG00000163069|Q16585-2|SGCB	REV__nc|ENSG00000163069|Q16585-2|SGCB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.80322265625	2	560.801477	1119.5884	1.7925	0.0010053	1.6123	0.00090419	3.4049	0.0019095	560.8023275850618	22.39	0.56589	22.39	22.251	22.817	0					37	13	5	0	0	0	0.4758	1	7254	7254		47.96	47.96	1	15948000	+		39232	15855	26635	26730	39722	39722					0.03339021149713517
STIRPKKW	8	Unmodified	_STIRPKKW_					0	0	0			REV__ENST00000331113.8_1_7:120381633-120387745:+|nuORF	REV__ENST00000331113.8_1_7:120381633-120387745:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.2049865722656	3	339.206426	1014.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.147	1	14.147	13.647	14.647	0								0	0	0	1.7419	1	2869	2869		31.955	4.0726	1		+		39233	18381	26636	26731	39723	39723					0.09073459296701003
STISCFHKL	9	Carbamidomethyl (C)	_STISC(Carbamidomethyl (C))FHKL_	STISC(1)FHKL		STISC(72)FHKL		0	1	0			REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.85504150390625	3	364.855065	1091.54336	1.2614	0.00046024	-1.3764	-0.00050219	-0.11496	-4.1946E-05	364.85459018511244	29.708	0.45956	29.708	29.599	30.059	0					23	9	4	0	0	0	0.13267	1	11040	11040		71.877	22.341	1	2039800	+		39234	16027	26637	26732	39724	39724	575				0.0012549908283290279
STISIFHCK	9	Carbamidomethyl (C)	_STISIFHC(Carbamidomethyl (C))K_	STISIFHC(1)K		STISIFHC(110)K		0	1	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.77880859375	2	546.778959	1091.54336	1.2179	0.0006659	-1.5199	-0.00083105	-0.30206	-0.00016516	546.7780822031453	29.448	0.37955	29.448	29.286	29.666	0					28	13	4	0	0	0	0.028876	1	9284	9284		110.12	55.344	1	663890			39235	10649	26638	26733	39725	39725	434				0.0012549908281016542
STISIFHCK	9	Carbamidomethyl (C)	_STISIFHC(Carbamidomethyl (C))K_	STISIFHC(1)K		STISIFHC(100)K		0	1	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7784423828125	2	546.778959	1091.54336	0.44198	0.00024167	-0.64385	-0.00035205	-0.20187	-0.00011038	546.7785585335374	29.726	0.68728	29.726	29.557	30.245	0					44	17	5	0	0	0	0.037569	1	10636	10636		101.6	44.88	1	3324400			39236	10649	26638	26733	39726	39726	434				0.0012549908281016542
STISIFHCK	9	Carbamidomethyl (C)	_STISIFHC(Carbamidomethyl (C))K_	STISIFHC(1)K		STISIFHC(65)K		0	1	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.85498046875	3	364.855065	1091.54336	0.4758	0.0001736	-0.87961	-0.00032093	-0.4038	-0.00014733	364.85486259856555	29.696	0.37127	29.696	29.6	29.972	0					27	9	5	0	0	0	0.16806	1	10637	10637		65.465	12.529	1	1300400			39237	10649	26638	26733	39727	39727	434				0.0012549908281016542
STISIFHCK	9	Carbamidomethyl (C)	_STISIFHC(Carbamidomethyl (C))K_	STISIFHC(1)K		STISIFHC(110)K		0	1	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7772216796875	2	546.778959	1091.54336	-0.26069	-0.00014254	0.18777	0.00010267	-0.072927	-3.9875E-05	546.779148703729	29.488	0.33433	29.488	29.369	29.704	0					32	12	4	0	0	0	0.028876	1	9572	9572		110.12	51.338	1	525280			39238	10649	26638	26733	39728	39728	434				0.0012549908281016542
STISIFHCK	9	Carbamidomethyl (C)	_STISIFHC(Carbamidomethyl (C))K_	STISIFHC(1)K		STISIFHC(150)K		0	1	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7789916992188	2	546.778959	1091.54336	0.33821	0.00018493	-0.048286	-2.6402E-05	0.28993	0.00015853	546.7789766844967	29.691	0.55394	29.691	29.582	30.136	0					23	11	3	0	0	0	0.0061615	1	11008	11008		153.04	62.666	1	3740100			39239	10649	26638	26733	39729	39729	434				0.0012549908281016542
STISIFHCK	9	Unmodified	_STISIFHCK_					0	0	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2683715820312	2	518.268227	1034.5219	0.46142	0.00023914	-0.33513	-0.00017369	0.12629	6.5451E-05	518.2681703939231	31.628	0.31701	31.628	31.53	31.847	0					20	14	2	0	0	0	0.24095	1	10168	10168		56.721	7.2795	1	69981			39240	10649	26638	26734	39730	39730					0.006021140540951819
STISIFHCK	9	Unmodified	_STISIFHCK_					0	0	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2683715820312	2	518.268227	1034.5219	0.052571	2.7246E-05	-0.59929	-0.00031059	-0.54672	-0.00028335	518.2684048084809	31.914	0.70047	31.914	31.764	32.464	0					31	17	3	0	0	0	0.037569	1	11661	11661		101.6	34.107	1	590200			39241	10649	26638	26734	39731	39731					0.006021140540951819
STISIFHCK	9	Unmodified	_STISIFHCK_					0	0	0		ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	ENST00000554584.5_1_14:64375879-64407376:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2687377929688	2	518.268227	1034.5219	-0.38447	-0.00019926	0.40345	0.0002091	0.018982	9.8376E-06	518.2683045336319	31.879	1.0573	31.879	31.736	32.793	0					54	24	4	0	0	0	0.010494	1	12053	12053		139.97	43.78	1	996620			39242	10649	26638	26734	39732	39732					0.006021140540951819
STISLQMGTNK	11	Unmodified	_STISLQMGTNK_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3;nc|ENSG00000064666|Q99439-2|CNN2;ENSG00000064666|ENST00000263097|CNN2	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.3062133789062	2	590.305538	1178.59652	0.21066	0.00012435	1.207	0.00071251	1.4177	0.00083686	590.3058175519445	31.616	0.21782	31.616	31.518	31.735	0					12	5	3	0	0	0	0.043502	1	11535	11535		108.31	42.847	1	154040			39243	3043	26639	26735	39733	39733					0.014368320748189944
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.729736328125	2	447.729989	893.445425	0.11135	4.9856E-05	-0.55838	-0.00025	-0.44703	-0.00020015	447.72982404243686	14.115	0.1145	14.115	14.055	14.169	0					8	5	2	0	0	0	0.067603	1	2855	2855		89.029	21.535	1	158890			39244	2096	26640	26736	39734	39734					-0.005559862415111638
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.729736328125	2	447.729989	893.445425	0.61314	0.00027452	-1.239	-0.00055475	-0.62589	-0.00028023	447.72935970893565	14.42	0.53609	14.42	14.338	14.875	0					28	13	4	0	0	0	0.010427	1	3499	3499		140.11	44.297	1	11094000			39245	2096	26640	26736	39735	39735					-0.005559862415111638
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7297058105469	2	447.729989	893.445425	-0.11243	-5.0337E-05	-0.13421	-6.0091E-05	-0.24664	-0.00011043	447.72989590290535	14.385	0.67596	14.385	14.284	14.96	0					31	14	4	0	0	0	1.4602E-05	1	3707	3707		204.42	68.156	1	18302000			39246	2096	26640	26736	39736	39736					-0.005559862415111638
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7297668457031	2	447.729989	893.445425	0.62004	0.00027761	-0.85319	-0.000382	-0.23315	-0.00010439	447.72947035477864	14.368	0.24058	14.368	14.267	14.508	0					11	5	3	0	0	0	0.067603	1	3722	3722		89.029	13.986	1	771500			39247	2096	26640	26736	39737	39737					-0.005559862415111638
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.7301025390625	2	447.729989	893.445425	0.51197	0.00022923	0.085271	3.8179E-05	0.59724	0.0002674	447.72995213968863	14.125	0.13668	14.125	14.079	14.215	0					16	7	3	0	0	0	0.16806	1	2941	2941		65.465	5.3471	1	204330			39248	2096	26640	26736	39738	39738					-0.005559862415111638
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.7294616699219	2	447.729989	893.445425	-0.36568	-0.00016373	0.16708	7.4805E-05	-0.1986	-8.8921E-05	447.7300568664753	14.136	0.11862	14.136	14.072	14.191	0					9	6	2	0	0	0	0.063171	1	2946	2946		90.601	10.888	1	99441			39249	2096	26640	26736	39739	39739					-0.005559862415111638
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7295837402344	2	447.729989	893.445425	-0.41794	-0.00018713	-0.24366	-0.00010909	-0.6616	-0.00029622	447.72983773533224	14.367	0.52096	14.367	14.257	14.777	0					22	10	4	0	0	0	0.0088974	2	3566	3542;3566		143.37	24.631	1	8961700			39250	2096	26640	26736	39740;39741	39741					-0.005559862415111638
STISSNASK	9	Unmodified	_STISSNASK_					0	0	0		ENSG00000101166|ENST00000355937|PRELID3B;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	ENSG00000101166|ENST00000355937|PRELID3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.72967529296875	2	447.729989	893.445425	0.84922	0.00038022	-1.2776	-0.00057201	-0.42837	-0.00019179	447.7293369272362	14.35	0.47164	14.35	14.239	14.711	0					21	9	4	0	0	0	0.001056	2	3558	3535;3558		182.39	51.36	1	5118900			39251	2096	26640	26736	39742;39743	39743					-0.005559862415111638
STISTTVKTS	10	Unmodified	_STISTTVKTS_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.18914794921875	3	342.188878	1023.5448	0.67617	0.00023138	0.17798	6.0904E-05	0.85415	0.00029228	342.1889655938693	18.345	0.231	18.345	18.254	18.485	0					9	5	3	0	0	0	0.65213	1	5360	5360		56.434	21.282	1	952410	+		39252	13312	26641	26737	39744	39744					0.033974116525769205
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.24395751953125	2	476.244418	950.474282	0.00072011	3.4295E-07	-0.46302	-0.00022051	-0.4623	-0.00022017	476.24416428477457	27.448	0.22173	27.448	27.372	27.594	0					13	7	2	0	0	0	0.082776	1	8461	8461		83.647	12.351	1	303420			39253	4803	26642	26738	39745	39745					-0.0029358493674180863
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.24456787109375	2	476.244418	950.474282	0.35763	0.00017032	-1.7575	-0.00083702	-1.3999	-0.0006667	476.2441461653188	27.699	0.47637	27.699	27.46	27.936	0					25	11	4	0	0	0	0.029571	1	9702	9702		109.44	32.665	1	1873700			39254	4803	26642	26738	39746	39746					-0.0029358493674180863
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2442932128906	2	476.244418	950.474282	-1.5295	-0.00072843	0.913	0.00043481	-0.61654	-0.00029362	476.2449668117036	27.481	0.20776	27.481	27.383	27.591	0					17	7	3	0	0	0	0.061298	1	8750	8750		91.265	27.959	1	538090			39255	4803	26642	26738	39747	39747					-0.0029358493674180863
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.244140625	2	476.244418	950.474282	0.63058	0.00030031	-1.1277	-0.00053704	-0.49707	-0.00023673	476.2439877415594	27.704	0.30944	27.704	27.554	27.863	0					16	6	4	0	0	0	0.021015	1	10077	10077		120.31	40.855	1	2579000			39256	4803	26642	26738	39748	39748					-0.0029358493674180863
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2439880371094	2	476.244418	950.474282	-0.38411	-0.00018293	-0.65686	-0.00031283	-1.041	-0.00049576	476.2442998381059	27.54	0.25727	27.54	27.414	27.671	0					15	6	4	0	0	0	0.026848	1	9012	9012		112.11	29.802	1	455590			39257	4803	26642	26738	39749	39749					-0.0029358493674180863
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.24395751953125	2	476.244418	950.474282	-2.7443	-0.0013069	2.6634	0.0012684	-0.080827	-3.8494E-05	476.24574873999285	27.531	0.21473	27.531	27.443	27.658	0					9	5	2	0	0	0	0.026538	1	9005	9005		112.41	30.106	1	289570			39258	4803	26642	26738	39750	39750					-0.0029358493674180863
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2438049316406	2	476.244418	950.474282	0.78056	0.00037174	-2.1657	-0.0010314	-1.3851	-0.00065967	476.2435904515707	27.654	0.27038	27.654	27.543	27.813	0					15	5	4	0	0	0	0.012936	1	9931	9931		134.77	59.722	1	2823400			39259	4803	26642	26738	39751	39751					-0.0029358493674180863
STITGVMDK	9	Unmodified	_STITGVMDK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2442932128906	2	476.244418	950.474282	2.2749	0.0010834	-2.5573	-0.0012179	-0.28242	-0.0001345	476.2434290099085	27.686	0.22005	27.686	27.577	27.797	0					13	4	4	0	0	0	0.015496	1	9924	9924		129.42	38.645	1	1956800			39260	4803	26642	26738	39752	39752					-0.0029358493674180863
STITKAWKK	9	Unmodified	_STITKAWKK_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2666625976562	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.513	1	18.513	18.013	19.013	0								0	0	0	0.088368	1	4618	4618		75.043	14.071	1				39261	6799	26643	26739	39753	39753					0.09498308748311501
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.80084228515625	2	507.800749	1013.58694	0.87637	0.00044502	-0.96688	-0.00049098	-0.090514	-4.5963E-05	507.8003878672362	15.055	0.086332	15.055	15.012	15.098	0					7	4	2	0	0	0	0.02429	1	3199	3199		114.89	38.12	1	88185			39262	4267	26644	26740	39754	39754					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8009033203125	2	507.800749	1013.58694	0.8842	0.000449	-1.0513	-0.00053385	-0.16709	-8.4849E-05	507.8003514246147	15.353	0.34483	15.353	15.117	15.462	0					9	4	3	0	0	0	0.00065248	1	3948	3948		186.41	83.637	1	768350			39263	4267	26644	26740	39755	39755					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.8695068359375	3	338.869591	1013.58694	0.51302	0.00017385	-0.72272	-0.00024491	-0.2097	-7.1061E-05	338.8693550145271	15.367	0.14076	15.367	15.269	15.41	0					8	3	3	0	0	0	0.48389	1	3957	3957		58.23	21.783	1	1075700			39264	4267	26644	26740	39756	39756					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.8008117675781	2	507.800749	1013.58694	-0.029974	-1.5221E-05	0.18376	9.3311E-05	0.15378	7.809E-05	507.80081932763414	15.367	0.14076	15.367	15.269	15.41	0					5	3	2	0	0	0	0.36135	1	3960	3960		45.022	4.244	1	673450			39265	4267	26644	26740	39757	39757					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.8011779785156	2	507.800749	1013.58694	-0.60634	-0.0003079	0.74862	0.00038015	0.14228	7.225E-05	507.80110956599924	15.1	0.21325	15.1	15.033	15.246	0					16	9	3	0	0	0	0.010427	1	3373	3373		140.11	52.416	1	526720			39266	4267	26644	26740	39758	39758					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8013000488281	2	507.800749	1013.58694	0.09022	4.5814E-05	0.26759	0.00013588	0.35781	0.0001817	507.8008338829258	15.162	0.1719	15.162	15.073	15.245	0					10	7	2	0	0	0	0.0043467	1	3335	3335		160.82	61.447	1	375650			39267	4267	26644	26740	39759	39759					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8010559082031	2	507.800749	1013.58694	-1.9073	-0.00096852	1.7639	0.00089572	-0.14336	-7.2796E-05	507.80153460798306	15.155	0.11605	15.155	15.089	15.205	0					11	5	3	0	0	0	0.001056	1	3331	3331		182.39	86.576	1	460750			39268	4267	26644	26740	39760	39760					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.80108642578125	2	507.800749	1013.58694	2.9479	0.001497	-2.3959	-0.0012167	0.55201	0.00028031	507.79954478976987	15.289	0.26725	15.289	15.178	15.445	0					10	5	2	0	0	0	0.00072198	1	4006	4006		185.72	74.07	1	5633500			39269	4267	26644	26740	39761	39761					0.08069431851617992
STITVDQMK	9	Unmodified	_STITVDQMK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7629089355469	2	511.762975	1021.5114	-1.7375	-0.00088919	2.5956	0.0013283	0.85805	0.00043912	511.76377713267783	27.37	0.17525	27.37	27.279	27.454	0					6	4	2	0	0	0	0.50858	1	8974	8974		31.53	3.6476	1	62460			39270	4928	26645	26741	39762	39762					0.001500866090168529
STIVEKQPPLK	11	Unmodified	_STIVEKQPPLK_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.9149169921875	3	413.915089	1238.72344	-0.069605	-2.8811E-05	-0.29956	-0.00012399	-0.36916	-0.0001528	413.91497962234297	25.944	0.78759	25.944	25.778	26.565	0					30	16	3	0	0	0	0.59204	1	8278	8278		37.508	2.33	1	218830	+		39271	15191	26646	26742	39763	39763					0.11362501291455374
STIVGGPA	8	Unmodified	_STIVGGPA_					0	0	0			REV__ENSG00000114030|ENST00000344337|KPNA1	REV__ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	351.1958923339844	2	351.195054	700.375555	0.16525	5.8036E-05	3.4915	0.0012262	3.6567	0.0012842	351.1961834181443	28.866	0.16904	28.866	28.78	28.949	0					9	5	2	0	0	0	0.72892	1	9054	9054		29.842	8.1392	1	39827	+		39272	14063	26647	26743	39764	39764					0.013381798805198741
STIVPTTDTR	10	Unmodified	_STIVPTTDTR_					0	0	0			REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.196044921875	3	364.196144	1089.5666	0.74254	0.00027043	-0.93963	-0.00034221	-0.19709	-7.1779E-05	364.1957763552425	15.414	0.17522	15.414	15.328	15.503	0					12	4	3	0	0	0	0.61187	1	3984	3984		45.022	0	1	9525600	+		39273	15925	26648	26744	39765	39765					0.025402164011211426
STIVPTTDTR	10	Unmodified	_STIVPTTDTR_					0	0	0			REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.19610595703125	3	364.196144	1089.5666	1.2965	0.00047219	-1.2567	-0.00045769	0.039833	1.4507E-05	364.1956239738121	15.377	0.26141	15.377	15.322	15.584	0					11	5	3	0	0	0	0.66185	1	4202	4202		31.634	7.1151	1	908060	+		39274	15925	26648	26744	39766	39766					0.025402164011211426
STIVPVTPR	9	Unmodified	_STIVPVTPR_					0	0	0		ENST00000564397.5_1_16:5075481-5078139:-|nuORF	ENST00000564397.5_1_16:5075481-5078139:-|nuORF	ENST00000564397.5_1_16:5075481-5078139:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.28985595703125	2	485.290017	968.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.383	1	33.383	32.883	33.883	0								0	0	0	0.27025	1	12773	12773		40.778	3.7497	1				39275	10742	26649	26745	39767	39767					0.07994046822909695
STKDEGLYET	10	Unmodified	_STKDEGLYET_					0	0	0			REV__VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	REV__VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.7639770507812	2	571.764226	1141.5139	0.084844	4.8511E-05	-1.544	-0.00088278	-1.4591	-0.00083427	571.7637858942426	13.183	0.082459	13.183	13.148	13.231	0					11	4	3	0	0	0	0.41384	1	2689	2689		34.173	0	1	287350	+		39276	13922	26650	26746	39768	39768					-0.05119786452337394
STKDICAGSNF	11	Unmodified	_STKDICAGSNF_					0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7627563476562	2	571.760963	1141.50737	3.3933	0.0019402	-0.51992	-0.00029727	2.8734	0.0016429	571.7608912591464	13.374	0.33048	13.374	13.275	13.605	0					20	7	4	0	0	0	0.074075	1	3094	3094		96.034	5.6638	1	5671600	+		39277	13431	26651	26747	39769	39769					-0.05772002884691574
STKDKGNTAGA	11	Unmodified	_STKDKGNTAGA_					0	0	0			REV__ENSG00000183036|ENST00000328619|PCP4	REV__ENSG00000183036|ENST00000328619|PCP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2666625976562	2	525.264727	1048.5149	1.7754	0.00093258	1.9128	0.0010047	3.6883	0.0019373	525.2656577544208	25.048	0.26471	25.048	24.89	25.155	0					10	5	2	0	0	0	0.18431	1	8828	8828		76.17	15.198	1	1443900	+		39278	16910	26652	26748	39770	39770					-0.007415272927573824
STKDKGNTAGA	11	Unmodified	_STKDKGNTAGA_					0	0	0			REV__ENSG00000183036|ENST00000328619|PCP4	REV__ENSG00000183036|ENST00000328619|PCP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.266845703125	2	525.264727	1048.5149	3.4421	0.001808	0.7429	0.00039022	4.185	0.0021982	525.265096213095	24.987	0.25583	24.987	24.837	25.093	0					10	5	2	0	0	0	0.29287	1	8677	8677		63.426	13.402	1	2075000	+		39279	16910	26652	26748	39771	39771					-0.007415272927573824
STKGLGLAL	9	Unmodified	_STKGLGLAL_					0	0	0		ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.2661437988281	2	430.26601	858.517468	0.18199	7.8306E-05	0.26272	0.00011304	0.44472	0.00019135	430.2660823849535	30.11	0.17861	30.11	30.024	30.202	0					12	6	3	0	0	0	0.2873	1	9557	9557		51.335	3.4199	1	93866			39280	6582	26653	26749	39772	39772					0.08254972902830104
STKIVPLGA	9	Unmodified	_STKIVPLGA_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2730407714844	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.856	1	39.856	39.356	40.356	0								0	0	0	0.16876	1	12921	12921		55.504	6.0627	1		+		39281	12522	26654	26750	39773	39773					0.08623259419891838
STKKEVIMK	9	Unmodified	_STKKEVIMK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.313232421875	2	532.312635	1062.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.668	1	15.668	15.168	16.168	0								0	0	0	0.084509	1	4329	4329		76.17	22.818	1				39282	314	26655	26751	39774	39774					0.08191529293776512
STKKIVSAW	9	Unmodified	_STKKIVSAW_					0	0	0			REV__IRF2|p.R331W|1|0.23|ENSG00000168310|chr4:184388817-184388817|G/A|missense_variant	REV__IRF2|p.R331W|1|0.23|ENSG00000168310|chr4:184388817-184388817|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2955322265625	2	510.297842	1018.58113	-0.11512	-5.8748E-05	-3.7979	-0.0019381	-3.913	-0.0019968	510.29588111508235	18.963	0.10583	18.963	18.896	19.002	0					6	3	2	0	0	0	0.14603	1	4820	4820		68.787	6.6794	1	166460	+		39283	20765	26656	26752	39775	39775					0.07258333339939327
STKKSQPPP	9	Unmodified	_STKKSQPPP_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2720031738281	2	485.271824	968.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.559	1	45.559	45.059	46.059	0								0	0	0	0.38404	1	15499	15499		15.642	2.6826	1				39284	5547	26657	26753	39776	39776					0.043571699261860886
STKLIVATFFI	11	Unmodified	_STKLIVATFFI_					0	0	0			REV__ENST00000379066.5_1_2:37543718-37543916:-|nuORF	REV__ENST00000379066.5_1_2:37543718-37543916:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.9150085449219	3	413.91643	1238.72746	-0.069674	-2.8839E-05	-3.1771	-0.001315	-3.2468	-0.0013439	414.24947394705293	26.786	0.4254	26.786	26.639	27.064	0					15	10	2	0	0	0	0.45905	1	8668	8668		47.228	6.1476	1	67599	+		39285	18752	26658	26754	39777	39777					0.1176459078519656
STKNCARGR	9	Carbamidomethyl (C)	_STKNC(Carbamidomethyl (C))ARGR_	STKNC(1)ARGR		STKNC(49)ARGR		0	1	0			REV__ENSG00000169884|ENST00000301061|WNT10B	REV__ENSG00000169884|ENST00000301061|WNT10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2674560546875	2	525.267081	1048.51961	0.66989	0.00035187	-1.7959	-0.00094331	-1.126	-0.00059144	525.2660454222387	24.774	0.28021	24.774	24.677	24.957	0					15	8	3	0	0	0	0.30951	1	7339	7339		49.442	9.3834	1	140890	+		39286	16340	26659	26755	39778	39778	583				-0.0027092163099950994
STKQSFSDQ	9	Unmodified	_STKQSFSDQ_					0	0	0			REV__ENST00000304449.5_2_X:118725002-118725137:-|nuORF	REV__ENST00000304449.5_2_X:118725002-118725137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2362670898438	2	514.238178	1026.4618	0.021399	1.1004E-05	-4.1274	-0.0021225	-4.106	-0.0021115	514.236502938191	13.368	0.16372	13.368	13.292	13.456	0					10	4	4	0	0	0	0.18416	1	3019	3019		63.534	1.4264	1	453870	+		39287	18230	26660	26756	39779	39779					-0.050369050754397904
STKQSFSDQ	9	Unmodified	_STKQSFSDQ_					0	0	0			REV__ENST00000304449.5_2_X:118725002-118725137:-|nuORF	REV__ENST00000304449.5_2_X:118725002-118725137:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2366943359375	2	514.238178	1026.4618	-0.48418	-0.00024898	-3.554	-0.0018276	-4.0382	-0.0020766	514.2367872235986	13.372	0.1951	13.372	13.267	13.462	0					11	4	4	0	0	0	0.04067	1	3232	3232		98.582	5.4388	1	1111200	+		39288	18230	26660	26756	39780	39780					-0.050369050754397904
STKRGHAKSR	10	Unmodified	_STKRGHAKSR_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.5514221191406	3	376.551256	1126.63194	0.7096	0.0002672	0.66683	0.00025109	1.3764	0.00051829	376.55115216818	43.664	0.33305	43.664	43.443	43.776	0					12	10	2	0	0	0	0.72365	1	17493	17493		18.262	4.1761	1	54398			39289	6307	26661	26757	39781	39781					0.07368675437510319
STKSIKIIP	9	Unmodified	_STKSIKIIP_					0	0	0			REV__ITIH5|p.R670I|1|0.57|ENSG00000123243|chr10:7573165-7573165|C/A|missense_variant	REV__ITIH5|p.R670I|1|0.57|ENSG00000123243|chr10:7573165-7573165|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.5461120605469	3	329.546337	985.617182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.612	1	27.612	27.112	28.112	0								0	0	0	0.27025	1	8818	8818		40.778	2.9666	1		+		39290	20770	26662	26758	39782	39782					0.12379790516808953
STKSSLLRQ	9	Unmodified	_STKSSLLRQ_					0	0	0		ENST00000356683.6_2_17:7162806-7163001:+|nuORF	ENST00000356683.6_2_17:7162806-7163001:+|nuORF	ENST00000356683.6_2_17:7162806-7163001:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.29583740234375	2	510.29583	1018.57711	-0.010003	-5.1046E-06	0.069523	3.5477E-05	0.05952	3.0373E-05	510.2958735526404	19.302	0.20319	19.302	19.198	19.402	0					9	4	3	0	0	0	0.0097668	1	5809	5809		141.52	0	1	1247400			39291	8809	26663	26759	39783	39783					0.06856243846243615
STKSWLSQ	8	Unmodified	_STKSWLSQ_					0	0	0		nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;ENSG00000141068|ENST00000644974|KSR1	nc|ENSG00000141068|Q8IVT5-4|KSR1	nc|ENSG00000141068|Q8IVT5-4|KSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7439880371094	2	468.742899	935.471246	3.9518	0.0018524	-1.0333	-0.00048437	2.9185	0.001368	468.742371960321	22.082	0.17212	22.082	21.984	22.156	0					8	5	2	0	0	0	0.42778	1	6439	6439		67.494	3.2864	1	196700			39292	4426	26664	26760	39784	39784					0.0009290800077224048
STKTLGIVSLQ	11	Unmodified	_STKTLGIVSLQ_					0	0	0		ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENST00000513079.5_1_5:73981085-74001232:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.8958435058594	3	382.895806	1145.66559	0.83641	0.00032026	-0.55807	-0.00021368	0.27835	0.00010658	382.8955883933693	24.618	0.26532	24.618	24.533	24.798	0					13	6	3	0	0	0	0.60833	1	8322	8322		36.318	3.5671	1	492630			39293	10245	26665	26761	39785	39785					0.0985823936603083
STKTLLEH	8	Unmodified	_STKTLLEH_					0	0	0			REV__ENSG00000128313|ENST00000249044|APOL5	REV__ENSG00000128313|ENST00000249044|APOL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7582702636719	2	464.758549	927.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.081	1	20.081	19.581	20.581	0								0	0	0	1.7419	1	5549	5549		35.618	2.1027	1		+		39294	14512	26666	26762	39786	39786					0.035894810348509054
STKTSNSLI	9	Unmodified	_STKTSNSLI_					0	0	0			REV__ENST00000475133.5_1_1:15892828-15894669:+|nuORF	REV__ENST00000475133.5_1_1:15892828-15894669:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.76123046875	2	475.761289	949.508025	-0.40761	-0.00019392	-0.41774	-0.00019874	-0.82535	-0.00039267	475.7611611051947	13.487	0.77635	13.487	13.367	14.144	0					57	20	5	0	0	0	0.51817	1	3240	3240		30.504	2.6214	1	54649000	+		39295	14137	26667	26763	39787	39787					0.03125159826663548
STKYRTLRQ	9	Unmodified	_STKYRTLRQ_					0	0	0		GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant;GFRA1|p.F264Lfs*15|1|0.28|ENSG00000151892|chr10:116096743-116096743|A/-|frameshift_variant;GFRA1|p.L403Pfs*27|1|0.16|ENSG00000151892|chr10:116065610-116065616|GATTTCA/-|frameshift_variant;nc|ENSG00000151892|P56159-2|GFRA1;ENSG00000151892|ENST00000355422|GFRA1	GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant	GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.8875732421875	3	384.887645	1151.64111	0.84604	0.00032563	-0.97298	-0.00037449	-0.12694	-4.8856E-05	384.88725162489646	15.967	0.22316	15.967	15.856	16.079	0					7	5	2	0	0	0	0.24334	1	4231	4231		56.434	4.906	1	454320			39296	4993	26668	26764	39788	39788					0.07135024003173385
STLAFRCP	8	Unmodified	_STLAFRCP_					0	0	0			REV__nc|ENSG00000240771|Q86VW2-2|ARHGEF25	REV__nc|ENSG00000240771|Q86VW2-2|ARHGEF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.72991943359375	2	447.728738	893.442923	3.4846	0.0015601	-0.68117	-0.00030498	2.8034	0.0012552	447.72839304372206	14.111	0.18972	14.111	14.051	14.241	0					16	9	3	0	0	0	0.59411	1	2997	2997		50.025	50.025	1	366250	+		39297	17683	26669	26765	39789	39789					-0.008061131801810006
STLAGLLAAL	10	Unmodified	_STLAGLLAAL_					0	0	0			REV__ENST00000367866.6_1_1:167394884-167394998:+|nuORF	REV__ENST00000367866.6_1_1:167394884-167394998:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.287109375	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.151	1	39.151	38.651	39.651	0								0	0	0	0.37276	1	13974	13974		38.806	0.99462	1		+		39298	18600	26670	26766	39790	39790					0.09219528591370363
STLAVTSQK	9	Unmodified	_STLAVTSQK_					0	0	0		VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7638244628906	2	467.763832	933.513111	-0.43543	-0.00020368	-0.15058	-7.0435E-05	-0.58601	-0.00027412	467.7636430869241	20.166	0.14728	20.166	20.092	20.239	0					10	5	3	0	0	0	0.023928	1	5346	5346		115.49	58.773	1	174630			39299	3797	26671	26767	39791	39791					0.043694636892951166
STLAVTSQK	9	Unmodified	_STLAVTSQK_					0	0	0		VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7635803222656	2	467.763832	933.513111	-0.64957	-0.00030385	0.30669	0.00014346	-0.34288	-0.00016039	467.7639026123035	20.518	0.19094	20.518	20.419	20.61	0					11	4	4	0	0	0	0.020674	1	6385	6385		120.87	44.094	1	1064700			39300	3797	26671	26767	39792	39792					0.043694636892951166
STLAVTSQK	9	Unmodified	_STLAVTSQK_					0	0	0		VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7633361816406	2	467.763832	933.513111	-1.0437	-0.00048821	0.72614	0.00033966	-0.31757	-0.00014855	467.7641076674862	20.21	0.14617	20.21	20.12	20.266	0					9	5	2	0	0	0	0.13726	2	5603	5603;5614		70.816	46.457	1	132520			39301	3797	26671	26767	39793;39794	39793					0.043694636892951166
STLAVTSQK	9	Unmodified	_STLAVTSQK_					0	0	0		VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.76336669921875	2	467.763832	933.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.278	1	20.278	19.778	20.778	0								0	0	0	0.30009	1	5671	5671		35.152	1.6364	1				39302	3797	26671	26767	39795	39795					0.043694636892951166
STLDGVSRK	9	Unmodified	_STLDGVSRK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7663879394531	2	481.766906	961.519259	0.080637	3.8848E-05	-1.3144	-0.00063321	-1.2337	-0.00059436	481.76647376390713	17.383	0.11934	17.383	17.323	17.442	0					6	4	2	0	0	0	0.085655	1	4140	4140		82.75	15.257	1	104160			39303	5610	26672	26768	39796	39796					0.03695981920805025
STLDGVSRK	9	Unmodified	_STLDGVSRK_					0	0	0		SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7665710449219	2	481.766906	961.519259	-0.11294	-5.4413E-05	-0.31816	-0.00015328	-0.4311	-0.00020769	481.7667722697446	17.694	0.20739	17.694	17.568	17.776	0					11	5	3	0	0	0	0.021961	1	5043	5043		118.74	11.736	1	560650			39304	5610	26672	26768	39797	39797					0.03695981920805025
STLDIKEK	8	Unmodified	_STLDIKEK_					0	0	0			REV__nc|ENSG00000166750|Q08AF3-2|SLFN5	REV__nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2671813964844	2	467.266207	932.517862	-0.13206	-6.1709E-05	2.561	0.0011966	2.4289	0.0011349	467.2673815619121	32.117	0.10941	32.117	32.048	32.157	0					4	2	2	0	0	0	0.59773	1	12183	12183		49.442	2.6751	1	32033	+		39305	16140	26673	26769	39798	39798					0.048903478320426075
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3148193359375	2	537.313689	1072.61282	0.74124	0.00039828	-0.063337	-3.4032E-05	0.67791	0.00036425	537.3135816883085	39.561	0.24714	39.561	39.466	39.713	0					27	14	3	0	0	0	0.13022	1	12825	12825		98.582	38.464	1	210500			39306	5985	26674	26770	39799	39799					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3138427734375	2	537.313689	1072.61282	0.21518	0.00011562	0.48835	0.0002624	0.70353	0.00037802	537.3139105336886	39.85	0.36927	39.85	39.763	40.133	0					31	13	4	0	0	0	0.01554	1	15159	15159		141.52	56.605	1	1740900			39307	5985	26674	26770	39800	39800					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.3143920898438	2	537.313689	1072.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.605	1	39.605	39.105	40.105	0								0	0	0	0.0012996	1	13304	13304		163.15	72.374	1				39308	5985	26674	26770	39801	39801					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.314697265625	2	537.313689	1072.61282	0.041004	2.2032E-05	1.468	0.00078879	1.509	0.00081082	537.3150094852908	39.619	0.087723	39.619	39.59	39.677	0					7	4	2	0	0	0	0.42408	1	13313	13313		49.536	10.73	1	58784			39309	5985	26674	26770	39802	39802					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3138427734375	2	537.313689	1072.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.808	1	39.808	39.308	40.308	0								0	0	0	1.2077E-06	1	15669	15669		195.05	110.13	1				39310	5985	26674	26770	39803	39803					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3143920898438	2	537.313689	1072.61282	0.29404	0.00015799	0.08151	4.3797E-05	0.37555	0.00020179	537.3138545913301	39.82	0.23666	39.82	39.72	39.956	0					17	8	3	0	0	0	0.0077833	1	15663	15663		158.07	73.159	1	335510			39311	5985	26674	26770	39804	39804					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.313720703125	2	537.313689	1072.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.79	1	39.79	39.29	40.29	0								0	0	0	1.2077E-06	1	15751	15751		195.05	98.856	1				39312	5985	26674	26770	39805	39805					0.0794228130321244
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7854614257812	2	548.785296	1095.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.654	1	32.654	32.154	33.154	0								0	0	0	0.18645	1	10566	10566		52.937	6.9847	1				39313	5941	26675	26771	39806	39806					0.012082337467290927
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7854614257812	2	548.785296	1095.55604	0.49987	0.00027432	-0.67509	-0.00037048	-0.17522	-9.6158E-05	548.7852679725859	32.901	0.24332	32.901	32.775	33.019	0					10	6	2	0	0	0	0.063171	1	12111	12111		90.601	32.371	1	229990			39314	5941	26675	26771	39807	39807					0.012082337467290927
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.785888671875	2	548.785296	1095.55604	0.38617	0.00021192	0.76486	0.00041974	1.151	0.00063167	548.7855449856396	32.695	0.19061	32.695	32.61	32.801	0					12	7	2	0	0	0	0.070005	1	10914	10914		88.177	26.07	1	140380			39315	5941	26675	26771	39808	39808					0.012082337467290927
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7860107421875	2	548.785296	1095.55604	1.762	0.00096694	-0.85912	-0.00047147	0.90284	0.00049547	548.7848966509675	32.874	0.38039	32.874	32.639	33.02	0					17	9	3	0	0	0	0.0016668	1	12528	12528		176.44	66.325	1	908820			39316	5941	26675	26771	39809	39809					0.012082337467290927
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.78515625	2	548.785296	1095.55604	1.1602	0.00063669	0.10891	5.977E-05	1.2691	0.00069646	548.7849618393583	32.662	0.14404	32.662	32.63	32.774	0					5	4	2	0	0	0	0.078509	1	11390	11390		85.161	32.224	1	90550			39317	5941	26675	26771	39810	39810					0.012082337467290927
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7855834960938	2	548.785296	1095.55604	1.8511	0.0010159	-0.54903	-0.0003013	1.3021	0.00071455	548.7851501678373	32.819	0.21818	32.819	32.754	32.972	0					8	4	3	0	0	0	0.020674	1	12419	12419		120.87	43.551	1	527640			39318	5941	26675	26771	39811	39811					0.012082337467290927
STLFSNPAS	9	Unmodified	_STLFSNPAS_					0	0	0			REV__ADAM23|p.N82Ifs*87|1|0.39|ENSG00000114948|chr2:206445331-206445331|A/-|frameshift_variant	REV__ADAM23|p.N82Ifs*87|1|0.39|ENSG00000114948|chr2:206445331-206445331|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2284240722656	2	462.227082	922.439611	-0.46846	-0.00021653	3.9228	0.0018132	3.4544	0.0015967	462.2286272510748	20.627	0.26609	20.627	20.443	20.709	0					10	5	3	0	0	0	0.36892	1	6606	6606		44.377	1.981	1	289470	+		39319	12065	26676	26772	39812	39812					-0.024710847531878244
STLGGRLQAK	10	Unmodified	_STLGGRLQAK_					0	0	0		GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8038330078125	2	515.803823	1029.59309	-1.5364	-0.0007925	1.0886	0.00056152	-0.44782	-0.00023099	515.8044938068529	20.26	0.15241	20.26	20.158	20.31	0					5	3	2	0	0	0	0.3337	1	5670	5670		63.534	34.364	1	182740			39320	6741	26677	26773	39813	39813					0.07947950083121214
STLGGRLQAK	10	Unmodified	_STLGGRLQAK_					0	0	0		GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8037109375	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.442	1	20.442	19.942	20.942	0								0	0	0	0.018634	1	6493	6493		120.87	33.114	1				39321	6741	26677	26773	39814	39814					0.07947950083121214
STLGNLSEKS	10	Unmodified	_STLGNLSEKS_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.8478088378906	3	345.848744	1034.5244	-0.0662	-2.2895E-05	-2.7949	-0.00096661	-2.8611	-0.00098951	345.8478807267539	31.711	0.30782	31.711	31.516	31.823	0					13	8	2	0	0	0	0.61238	1	10929	10929		32.751	4.1738	1	82028	+		39322	16578	26678	26774	39815	39815					0.008522409927763874
STLGPKTFHR	10	Unmodified	_STLGPKTFHR_					0	0	0		nc|ENSG00000106034|A4D0V7-2|CPED1;CPED1|p.H927Tfs*4|2|0.25|ENSG00000106034|chr7:121271333-121271334|-/A|frameshift_variant;ENSG00000106034|ENST00000310396|CPED1	nc|ENSG00000106034|A4D0V7-2|CPED1	nc|ENSG00000106034|A4D0V7-2|CPED1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.88037109375	3	381.88049	1142.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.211	1	21.211	20.711	21.711	0								0	0	0	0.33707	1	6998	6998		45.022	12.21	1				39323	682	26679	26775	39816	39816					0.0540363897446241
STLGSQGQTGK	11	Unmodified	_STLGSQGQTGK_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2730712890625	2	532.272552	1062.53055	0.37054	0.00019723	0.45607	0.00024275	0.82661	0.00043998	532.2727351807233	15.635	0.16724	15.635	15.568	15.735	0					15	7	3	0	0	0	0.23242	1	3427	3427		70.399	27.534	1	179950			39324	3390	26680	26776	39817	39817					0.0017875922428629565
STLGSQGQTGK	11	Unmodified	_STLGSQGQTGK_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2731323242188	2	532.272552	1062.53055	0.12487	6.6463E-05	0.54566	0.00029044	0.67053	0.0003569	532.2728324771075	15.934	0.26558	15.934	15.841	16.107	0					17	6	4	0	0	0	0.023577	1	4207	4207		118.23	44.068	1	1876300			39325	3390	26680	26776	39818	39818					0.0017875922428629565
STLGSQGQTGK	11	Unmodified	_STLGSQGQTGK_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2728271484375	2	532.272552	1062.53055	1.7157	0.00091323	-1.2226	-0.00065076	0.49311	0.00026247	532.2719692093872	15.872	0.46039	15.872	15.719	16.179	0					20	9	4	0	0	0	2.0157E-12	1	4435	4435		215.72	122.12	1	2410000			39326	3390	26680	26776	39819	39819					0.0017875922428629565
STLGYTISR	9	Unmodified	_STLGYTISR_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2689514160156	2	499.269281	996.52401	-1.204	-0.00060112	0.59019	0.00029467	-0.6138	-0.00030645	499.26963411974396	30.338	0.14705	30.338	30.236	30.383	0					7	4	2	0	0	0	0.21222	1	9963	9963		61.691	33.809	1	137030			39327	6238	26681	26777	39820	39820					0.025608660635839442
STLGYTISR	9	Unmodified	_STLGYTISR_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.26983642578125	2	499.269281	996.52401	-0.65743	-0.00032823	1.3496	0.00067382	0.69219	0.00034559	499.2698868333975	30.538	0.293	30.538	30.432	30.725	0					12	6	3	0	0	0	0.058553	1	11452	11452		96.034	39.313	1	870450			39328	6238	26681	26777	39821	39821					0.025608660635839442
STLHHVLQR	9	Unmodified	_STLHHVLQR_					0	0	0		ENST00000461123.1_1_21:45175398-45175941:+|nuORF;ENST00000468392.5_1_21:45165928-45175941:+|nuORF;nc|ENSG00000160209|O00764-3|PDXK;nc|ENSG00000160209|O00764-2|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	ENST00000461123.1_1_21:45175398-45175941:+|nuORF	ENST00000461123.1_1_21:45175398-45175941:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.8094482421875	2	545.809439	1089.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.181	1	19.181	18.681	19.681	0								0	0	0	0.17378	1	6019	6019		54.776	10.399	1				39329	5347	26682	26778	39822	39822					0.06310772177266699
STLIADFLLIS	11	Unmodified	_STLIADFLLIS_					0	0	0			REV__ENST00000581444.5_1_18:20889645-20956810:-|nuORF	REV__ENST00000581444.5_1_18:20889645-20956810:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.2326965332031	3	398.232307	1191.67509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.004	1	47.004	46.504	47.504	0								0	0	0	0.45344	1	18787	18787		25.126	0	1		+		39330	14747	26683	26779	39823	39823					0.08692007651575295
STLIFLCEMK	10	Unmodified	_STLIFLCEMK_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|79|1|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|79|1|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|79|1|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.5385437011719	3	395.539977	1183.5981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.068	1	14.068	13.568	14.568	0								0	0	0	0.4201	1	2844	2844		22.58	5.1116	1				39331	11282	26684	26780	39824	39824					0.01364749839194701
STLKAEKGQ	9	Unmodified	_STLKAEKGQ_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.26922607421875	2	481.269281	960.52401	0.53211	0.00025609	-1.0926	-0.00052585	-0.56053	-0.00026976	481.2687644110947	13.628	0.20044	13.628	13.555	13.755	0					11	5	3	0	0	0	0.03984	1	3139	3139		99.375	10.732	1	701360	+		39332	17610	26685	26781	39825	39825					0.04216866063575253
STLKAEKGQ	9	Unmodified	_STLKAEKGQ_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.26910400390625	2	481.269281	960.52401	-0.10667	-5.1335E-05	0.22729	0.00010939	0.12062	5.8051E-05	481.2691753337123	13.617	0.25149	13.617	13.557	13.809	0					8	5	3	0	0	0	0.1115	1	3364	3364		76.774	10.971	1	868190	+		39333	17610	26685	26781	39826	39826					0.04216866063575253
STLKIMEMSI	10	Unmodified	_STLKIMEMSI_					0	0	0		nc|ENSG00000042317|Q9P0W8-3|SPATA7;ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7	nc|ENSG00000042317|Q9P0W8-3|SPATA7	nc|ENSG00000042317|Q9P0W8-3|SPATA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.87176513671875	3	384.871616	1151.59302	0.84644	0.00032577	-0.715	-0.00027518	0.13144	5.0588E-05	384.8713512993523	19.222	0.3975	19.222	18.924	19.322	0					28	9	4	0	0	0	0.65051	1	5728	5728		28.081	28.081	1	976980			39334	1199	26686	26782	39827	39827					0.023284459766273358
STLKKISIP	9	Unmodified	_STLKKISIP_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.8162841796875	2	493.815867	985.617182	-0.081206	-4.0101E-05	0.35585	0.00017573	0.27465	0.00013562	493.81600556810815	27.605	1.0456	27.605	27.372	28.417	0					64	34	3	0	0	0	0.22837	1	8615	8615		51.335	3.6781	1	164750			39335	5559	26687	26783	39828	39828					0.12379790516808953
STLKKLFNK	9	Unmodified	_STLKKLFNK_					0	0	0			REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.22454833984375	3	360.225486	1077.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.346	1	35.346	34.846	35.846	0								0	0	0	0.22284	1	11956	11956		47.657	6.2307	1		+		39336	21708	26688	26784	39829	39829					0.11890881782414908
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.8793640136719	3	345.87921	1034.6158	0.39115	0.00013529	-0.88016	-0.00030443	-0.48902	-0.00016914	345.8789970772898	19.865	0.24158	19.865	19.766	20.007	0					17	7	4	0	0	0	0.14578	1	5202	5202		68.846	8.9154	1	1424800			39337	2470	26689	26785	39830	39830					0.09987833156401393
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.879150390625	3	345.87921	1034.6158	0.68692	0.00023759	-1.3231	-0.00045763	-0.63619	-0.00022004	345.8791231778537	20.201	0.60378	20.201	20.11	20.714	0					32	13	5	0	0	0	0.02429	1	6215	6215		114.89	10.881	1	33135000			39338	2470	26689	26785	39831	39831					0.09987833156401393
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.8792419433594	3	345.87921	1034.6158	-0.7791	-0.00026947	0.73331	0.00025364	-0.045789	-1.5838E-05	345.8794864841324	19.911	0.19513	19.911	19.842	20.037	0					12	6	3	0	0	0	0.25761	1	5484	5484		54.722	8.2656	1	283730			39339	2470	26689	26785	39832	39832					0.09987833156401393
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.315185546875	2	518.315177	1034.6158	1.5767	0.00081723	-1.6429	-0.00085152	-0.066156	-3.429E-05	518.3144140145265	20.12	0.56822	20.12	19.961	20.529	0					32	11	5	0	0	0	0.0051572	1	6457	6457		141.52	0	1	10740000			39340	2470	26689	26785	39833	39833					0.09987833156401393
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.879150390625	3	345.87921	1034.6158	1.4638	0.00050629	-1.6941	-0.00058595	-0.2303	-7.9655E-05	345.87871865709485	20.12	0.26838	20.12	20.011	20.28	0					15	5	5	0	0	0	0.035106	1	6458	6458		104.01	10.416	1	5361900			39341	2470	26689	26785	39834	39834					0.09987833156401393
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.879150390625	3	345.87921	1034.6158	0.48375	0.00016732	-0.20879	-7.2217E-05	0.27496	9.5101E-05	345.8791017065358	19.94	0.18749	19.94	19.889	20.076	0					8	4	3	0	0	0	0.054723	1	5525	5525		93.598	9.9506	1	198720			39342	2470	26689	26785	39835	39835					0.09987833156401393
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.8791198730469	3	345.87921	1034.6158	-0.066335	-2.2944E-05	-0.26968	-9.3278E-05	-0.33602	-0.00011622	345.87914906285545	19.972	0.22637	19.972	19.874	20.1	0					14	5	4	0	0	0	0.017421	1	5517	5517		126.24	11.348	1	1107400			39343	2470	26689	26785	39836	39836					0.09987833156401393
STLKSIMKK	9	Unmodified	_STLKSIMKK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:730997-731267:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.8791198730469	3	345.87921	1034.6158	-0.035348	-1.2226E-05	-0.38479	-0.00013309	-0.42014	-0.00014532	345.87914847978726	20.103	0.31627	20.103	19.995	20.311	0					16	6	4	0	0	0	0.061298	1	6338	6338		91.265	9.7402	1	3454600			39344	2470	26689	26785	39837	39837					0.09987833156401393
STLLAPKS	8	Unmodified	_STLLAPKS_					0	0	0		ENST00000393658.6_1_4:176556009-176556105:-|nuORF	ENST00000393658.6_1_4:176556009-176556105:-|nuORF	ENST00000393658.6_1_4:176556009-176556105:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.7463073730469	2	408.744911	815.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.65	1	40.65	40.15	41.15	0								0	0	0	1.7419	1	15500	15500		24.203	0	1				39345	9160	26690	26786	39838	39838					0.06014997494480667
STLLELKSK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STLLELKSK_					1	0	0			REV__ENST00000366535.3_1_1:244579309-244580933:-|nuORF	REV__ENST00000366535.3_1_1:244579309-244580933:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.8163452148438	2	530.816064	1059.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.358	1	23.358	22.858	23.858	0								0	0	0	0.1219	1	7116	7116		66.429	13.078	1		+		39346	18583	26691	26787	39839	39839					0.09015165446021456
STLLHTKVV	9	Unmodified	_STLLHTKVV_					0	0	0			REV__ENST00000484572.1_1_6:45870949-45882153:-|nuORF	REV__ENST00000484572.1_1_6:45870949-45882153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.20623779296875	3	333.206203	996.596781	0.65052	0.00021676	-0.77407	-0.00025793	-0.12355	-4.1168E-05	333.2059534892866	19.223	0.47684	19.223	18.896	19.373	0					28	11	3	0	0	0	0.54267	1	5800	5800		27.882	1.1893	1	595810	+		39347	19638	26692	26788	39840	39840					0.09834619856985682
STLLIYEVS	9	Unmodified	_STLLIYEVS_					0	0	0		nc|ENSG00000211623|A0A0A0MRZ7|IGKV2D-26	nc|ENSG00000211623|A0A0A0MRZ7|IGKV2D-26	nc|ENSG00000211623|A0A0A0MRZ7|IGKV2D-26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.189208984375	3	342.190219	1023.54883	0.35768	0.0001224	-3.7948	-0.0012985	-3.4371	-0.0011761	342.1891384175919	18.318	0.17035	18.318	18.207	18.377	0					5	3	2	0	0	0	0.39215	1	5614	5614		42.396	15.703	1	386610			39348	11729	26693	26789	39841	39841					0.03799501146284001
STLLNPIPK	9	Unmodified	_STLLNPIPK_					0	0	0		SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant;ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3	SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant	SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7997741699219	2	491.800217	981.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.865	1	34.865	34.365	35.365	0								0	0	0	0.063706	1	11416	11416		82.241	25.519	1				39349	921	26694	26790	39842	39842					0.09435217482712233
STLLNPIPK	9	Unmodified	_STLLNPIPK_					0	0	0		SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant;ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3	SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant	SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.8001708984375	2	491.800217	981.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.123	1	35.123	34.623	35.623	0								0	0	0	0.14033	1	13144	13144		62.107	7.3311	1				39350	921	26694	26790	39843	39843					0.09435217482712233
STLLNPIPK	9	Unmodified	_STLLNPIPK_					0	0	0		SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant;ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3	SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant	SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.8001403808594	2	491.800217	981.585882	-0.73405	-0.00036101	0.060567	2.9787E-05	-0.67348	-0.00033122	491.80033646203026	35.098	0.23061	35.098	34.947	35.178	0					12	6	2	0	0	0	0.10915	1	13566	13566		77.318	15.21	1	123770			39351	921	26694	26790	39844	39844					0.09435217482712233
STLLPLQR	8	Unmodified	_STLLPLQR_					0	0	0			REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2844543457031	2	464.284734	926.554916	0.57299	0.00026603	-0.63726	-0.00029587	-0.064273	-2.9841E-05	464.2846870771583	35.156	0.47411	35.156	34.993	35.467	0					23	12	3	0	0	0	0.34985	1	13151	13151		76.847	10.417	1	1138500	+		39352	16033	26695	26791	39845	39845					0.08870064168468161
STLLPLQR	8	Unmodified	_STLLPLQR_					0	0	0			REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.2849426269531	2	464.284734	926.554916	-0.74579	-0.00034626	0.58454	0.00027139	-0.16125	-7.4866E-05	464.2852048328336	34.941	0.38969	34.941	34.827	35.217	0					37	17	4	0	0	0	0.44433	1	11790	11790		65.803	7.9919	1	352970	+		39353	16033	26695	26791	39846	39846					0.08870064168468161
STLLPLQR	8	Unmodified	_STLLPLQR_					0	0	0			REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2846984863281	2	464.284734	926.554916	0.68997	0.00032034	-0.33866	-0.00015724	0.35131	0.00016311	464.2846748494599	35.15	0.4374	35.15	35.028	35.466	0					37	12	6	0	0	0	0.34985	1	13585	13585		76.847	18.065	1	2168200	+		39354	16033	26695	26791	39847	39847					0.08870064168468161
STLLPLQR	8	Unmodified	_STLLPLQR_					0	0	0			REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2851867675781	2	464.284734	926.554916	-2.3537	-0.0010928	1.3831	0.00064215	-0.97063	-0.00045065	464.28552866949025	34.928	0.30346	34.928	34.811	35.115	0					19	10	4	0	0	0	0.37378	1	12387	12387		73.975	8.1716	1	270980	+		39355	16033	26695	26791	39848	39848					0.08870064168468161
STLLPLQR	8	Unmodified	_STLLPLQR_					0	0	0			REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.284423828125	2	464.284734	926.554916	0.72244	0.00033542	-0.21741	-0.00010094	0.50503	0.00023448	464.2847709746989	35.081	0.46825	35.081	34.964	35.432	0					32	9	6	0	0	0	0.34985	1	13516	13516		76.847	11.043	1	1892300	+		39356	16033	26695	26791	39849	39849					0.08870064168468161
STLLQRYVF	9	Unmodified	_STLLQRYVF_					0	0	0			REV__ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	REV__ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.2143859863281	3	376.213358	1125.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.072	1	17.072	16.572	17.572	0								0	0	0	0.22284	1	4857	4857		47.657	1.6851	1		+		39357	20543	26696	26792	39850	39850					0.060460048857066795
STLLSGAALS	10	Unmodified	_STLLSGAALS_					0	0	0			REV__ENST00000430430.5_1_8:81398575-81399061:+|nuORF	REV__ENST00000430430.5_1_8:81398575-81399061:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.25726318359375	2	460.258382	918.502212	0.70857	0.00032613	-2.0221	-0.00093069	-1.3135	-0.00060456	460.2570526364044	30.771	0.11646	30.771	30.73	30.847	0					7	4	2	0	0	0	0.47859	1	9836	9836		47.657	5.1829	1	67059	+		39358	19157	26697	26793	39851	39851					0.03970061314987561
STLMSLPTK	9	Unmodified	_STLMSLPTK_					0	0	0		nc|ENSG00000158517|P14598-2|NCF1;nc|ENSG00000165178|A8MVU1|NCF1C;ENSG00000158517|ENST00000289473|NCF1	nc|ENSG00000158517|P14598-2|NCF1	nc|ENSG00000158517|P14598-2|NCF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2705078125	2	489.270435	976.526318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.43	1	34.43	33.93	34.93	0								0	0	0	0.084509	1	13197	13197		76.17	28.21	1				39359	5267	26698	26794	39852	39852					0.03711578477020794
STLNELVDYI	10	Unmodified	_STLNELVDYI_					0	0	0		PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-3|PPP2R5E;PPP2R5E|p.K449Nfs*7|1|0.22|ENSG00000154001|chr14:63376066-63376066|T/-|frameshift_variant;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.5364685058594	3	389.536166	1165.58667	-0.69974	-0.00027257	1.6144	0.00062888	0.91469	0.0003563	389.53671160443173	20.552	0.56529	20.552	20.443	21.008	0					16	11	3	0	0	0	0.54861	1	6559	6559		40.058	9.7405	1	641130			39360	5070	26699	26795	39853	39853					0.010499673411004551
STLNSCVSK	9	Unmodified	_STLNSCVSK_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;ENST00000464096.1_1_2:160006874-160007087:+|nuORF;ENST00000465963.1_1_2:160005603-160007087:+|nuORF;TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant;TANC1|p.E735Lfs*10|1|0.14|ENSG00000115183|chr2:159178846-159178847|-/TC|frameshift_variant	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.73394775390625	2	469.734217	937.453881	0.44795	0.00021042	-1.0474	-0.00049201	-0.59948	-0.00028159	469.73374892892423	21.496	0.15187	21.496	21.444	21.596	0					5	3	2	0	0	0	0.30257	1	6850	6850		50.034	9.9753	1	121000			39361	2886	26700	26796	39854	39854					-0.017347555965443462
STLNSCVSK	9	Unmodified	_STLNSCVSK_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;ENST00000464096.1_1_2:160006874-160007087:+|nuORF;ENST00000465963.1_1_2:160005603-160007087:+|nuORF;TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant;TANC1|p.E735Lfs*10|1|0.14|ENSG00000115183|chr2:159178846-159178847|-/TC|frameshift_variant	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7354736328125	2	469.734217	937.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.297	1	21.297	20.797	21.797	0								0	0	0	0.23111	1	6149	6149		46.457	8.6453	1				39362	2886	26700	26796	39855	39855					-0.017347555965443462
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2636413574219	2	466.263999	930.513445	-0.43791	-0.00020418	-0.10167	-4.7403E-05	-0.53958	-0.00025159	466.2639427478947	24.061	0.21492	24.061	23.978	24.193	0					13	6	3	0	0	0	0.02953	1	7035	7035		109.48	40.994	1	380570			39363	90	26701	26797	39856	39856					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2636413574219	2	466.263999	930.513445	-0.66877	-0.00031182	-0.65224	-0.00030412	-1.321	-0.00061594	466.2635196505725	24.348	0.41517	24.348	24.118	24.533	0					22	9	4	0	0	0	0.0012088	1	8194	8194		180.87	81.494	1	2199100			39364	90	26701	26797	39857	39857					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2636413574219	2	466.263999	930.513445	-0.91683	-0.00042749	0.1424	6.6397E-05	-0.77443	-0.00036109	466.2640880419523	24.101	0.36122	24.101	23.991	24.352	0					19	11	3	0	0	0	0.0097668	1	7317	7317		141.52	64.203	1	756930			39365	90	26701	26797	39858	39858					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.26361083984375	2	466.263999	930.513445	0.66381	0.00030951	-2.3937	-0.0011161	-1.7299	-0.00080659	466.2628575071815	24.302	0.91141	24.302	24.045	24.957	0					36	18	4	0	0	0	7.7249E-13	1	8500	8500		229.33	121.24	1	3987700			39366	90	26701	26797	39859	39859					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2634582519531	2	466.263999	930.513445	-0.61346	-0.00028604	-0.2771	-0.0001292	-0.89057	-0.00041524	466.26383338502694	24.13	0.44171	24.13	23.958	24.4	0					13	10	2	0	0	0	0.0080613	1	7468	7468		145.16	62.915	1	831420			39367	90	26701	26797	39860	39860					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.26361083984375	2	466.263999	930.513445	-2.2609	-0.0010542	1.0913	0.00050883	-1.1696	-0.00054536	466.2644457826674	24.119	0.34746	24.119	23.915	24.263	0					16	8	3	0	0	0	0.0047071	1	7478	7478		159.28	77.035	1	838170			39368	90	26701	26797	39861	39861					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.26361083984375	2	466.263999	930.513445	0.65673	0.00030621	-1.5574	-0.00072614	-0.90064	-0.00041993	466.2633003408274	24.27	0.90196	24.27	24.012	24.914	0					32	18	2	0	0	0	3.4569E-05	1	8358	8358		199.7	86.293	1	3338700			39369	90	26701	26797	39862	39862					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2637023925781	2	466.263999	930.513445	2.6325	0.0012274	-4.0162	-0.0018726	-1.3837	-0.00064518	466.262051666535	24.284	0.85715	24.284	23.996	24.854	0					33	17	5	0	0	0	3.4569E-05	1	8352	8352		199.7	103.51	1	2886700			39370	90	26701	26797	39863	39863					0.04540883409151775
STLPAITLK	9	Unmodified	_STLPAITLK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.295654296875	2	472.294768	942.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.627	1	37.627	37.127	38.127	0								0	0	0	0.27025	1	13465	13465		40.778	3.6191	1				39371	3058	26702	26798	39864	39864					0.1013981510842541
STLPAITLK	9	Unmodified	_STLPAITLK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.29449462890625	2	472.294768	942.574983	-0.56719	-0.00026788	0.59868	0.00028275	0.031483	1.4869E-05	472.29499197885883	37.767	0.54359	37.767	37.417	37.961	0					28	11	3	0	0	0	0.36892	1	14732	14732		44.377	1.981	1	371920			39372	3058	26702	26798	39865	39865					0.1013981510842541
STLPCMKQKG	10	Unmodified	_STLPCMKQKG_					0	0	0		RALGDS|p.R901C|1|0.35|ENSG00000160271|chr9:133098631-133098631|G/A|missense_variant	RALGDS|p.R901C|1|0.35|ENSG00000160271|chr9:133098631-133098631|G/A|missense_variant	RALGDS|p.R901C|1|0.35|ENSG00000160271|chr9:133098631-133098631|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.8548583984375	3	364.856188	1091.54674	-2.0652	-0.00075349	-1.0589	-0.00038636	-3.1241	-0.0011399	364.8556452891589	29.498	0.2106	29.498	29.405	29.616	0					12	5	3	0	0	0	0.52275	1	9937	9937		42.864	6.4175	1	235190			39373	11999	26703	26799	39866	39866					0.004624258651574564
STLPHQERIQ	10	Unmodified	_STLPHQERIQ_					0	0	0		ENST00000525288.5_3_19:37314612-37328945:-|nuORF	ENST00000525288.5_3_19:37314612-37328945:-|nuORF	ENST00000525288.5_3_19:37314612-37328945:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.822509765625	2	604.822744	1207.63093	-0.43887	-0.00026544	-0.39571	-0.00023934	-0.83458	-0.00050477	604.8224703884413	34.088	0.15577	34.088	33.987	34.143	0					8	4	2	0	0	0	0.2978	1	12663	12663		67.494	12.717	1	162020			39374	10360	26704	26800	39867	39867					0.035424162779463586
STLPKPVQK	9	Unmodified	_STLPKPVQK_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521293.5_1_8:74529642-74659041:-|nuORF;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF;ENST00000522962.5_1_8:74566130-74621380:-|nuORF;STAU2|p.F158Lfs*16|1|0.27|ENSG00000040341|chr8:73617388-73617388|A/-|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.3056335449219	2	499.305667	996.596781	0.67377	0.00033641	-0.83194	-0.00041539	-0.15818	-7.8979E-05	499.30519741875526	19.247	0.47684	19.247	18.896	19.373	0					32	11	4	0	0	0	0.070005	1	5730	5730		82.241	13.454	1	801840			39375	1191	26705	26801	39868	39868					0.09834619856997051
STLPKPVQK	9	Unmodified	_STLPKPVQK_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521293.5_1_8:74529642-74659041:-|nuORF;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF;ENST00000522962.5_1_8:74566130-74621380:-|nuORF;STAU2|p.F158Lfs*16|1|0.27|ENSG00000040341|chr8:73617388-73617388|A/-|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	333.2061767578125	3	333.206203	996.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.988	1	18.988	18.488	19.488	0								0	0	0	0.18645	1	5063	5063		52.937	18.764	1				39376	1191	26705	26801	39869	39869					0.09834619856997051
STLPKPVQK	9	Unmodified	_STLPKPVQK_					0	0	0		STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant;STAU2|p.K274Nfs*22|1|0.09|ENSG00000040341|chr8:73613813-73613813|T/-|frameshift_variant;STAU2|p.K410Ifs*9|1|0.07|ENSG00000040341|chr8:73552313-73552314|-/A|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;STAU2|p.C491Lfs*31|1|0.39|ENSG00000040341|chr8:73552072-73552073|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521293.5_1_8:74529642-74659041:-|nuORF;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF;ENST00000522962.5_1_8:74566130-74621380:-|nuORF;STAU2|p.F158Lfs*16|1|0.27|ENSG00000040341|chr8:73617388-73617388|A/-|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	STAU2|p.L259Tfs*15|2|0.48|ENSG00000040341|chr8:73613860-73613861|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.30621337890625	2	499.305667	996.596781	-0.34665	-0.00017309	0.70976	0.00035439	0.36311	0.0001813	499.3058701179123	18.982	0.36286	18.982	18.73	19.093	0					18	8	3	0	0	0	0.24334	1	5019	5019		40.778	1.5253	1	133020			39377	1191	26705	26801	39870	39870					0.09834619856997051
STLPKSLLK	9	Unmodified	_STLPKSLLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.5462951660156	3	329.546337	985.617182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.64	1	27.64	27.14	28.14	0								0	0	0	0.16453	1	8543	8543		56.434	1.6575	1				39378	6541	26706	26802	39871	39871					0.12379790516820321
STLPKSLLK	9	Unmodified	_STLPKSLLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.8155517578125	2	493.815867	985.617182	-0.048974	-2.4184E-05	-0.21976	-0.00010852	-0.26873	-0.0001327	493.8157626832992	27.909	0.83191	27.909	27.617	28.449	0					28	17	2	0	0	0	0.24169	1	10137	10137		41.427	7.2541	1	122920			39379	6541	26706	26802	39872	39872					0.12379790516820321
STLPKSLLK	9	Unmodified	_STLPKSLLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8168029785156	2	493.815867	985.617182	0.25884	0.00012782	0.05538	2.7347E-05	0.31422	0.00015517	493.81586193256095	27.703	0.84324	27.703	27.427	28.27	0					38	20	3	0	0	0	0.36135	1	9192	9192		37.812	6.2817	1	106390			39380	6541	26706	26802	39873	39873					0.12379790516820321
STLPKSLLK	9	Unmodified	_STLPKSLLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.81573486328125	2	493.815867	985.617182	-0.62515	-0.00030871	0.28022	0.00013838	-0.34494	-0.00017034	493.8159316255277	27.848	1.4659	27.848	27.56	29.026	0					84	29	4	0	0	0	0.034688	2	9940	9940;10112		88.177	5.9364	1	1373200			39381	6541	26706	26802	39874;39875	39874					0.12379790516820321
STLPLGGFQ	9	Unmodified	_STLPLGGFQ_					0	0	0		nc|ENSG00000170262|Q8TCY5-3|MRAP;ENSG00000170262|ENST00000303645|MRAP;nc|ENSG00000170262|Q8TCY5-1|MRAP	nc|ENSG00000170262|Q8TCY5-3|MRAP	nc|ENSG00000170262|Q8TCY5-3|MRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2482604980469	2	460.247818	918.481082	-0.10728	-4.9376E-05	2.4742	0.0011387	2.3669	0.0010894	460.24899250313604	30.675	0.12064	30.675	30.594	30.714	0					6	3	2	0	0	0	0.37197	1	10466	10466		44.117	3.5442	1	49004			39382	6222	26707	26803	39876	39876					0.018580960061512997
STLPPLVSR	9	Unmodified	_STLPPLVSR_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2898864746094	2	485.290017	968.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.26	1	33.26	32.76	33.76	0								0	0	0	0.34845	1	11149	11149		25.574	0	1				39383	7164	26708	26804	39877	39877					0.07994046822898326
STLPPVKSK	9	Unmodified	_STLPPVKSK_					0	0	0		ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant;ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant;ARFGEF1|p.G612Vfs*2|1|0.33|ENSG00000066777|chr8:67266964-67266964|T/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.79193115234375	2	478.792392	955.570232	-0.022484	-1.0765E-05	-1.2445	-0.00059587	-1.267	-0.00060663	478.791414732191	17.69	0.63025	17.69	17.579	18.209	0					30	18	4	0	0	0	0.02429	1	4261	4261		114.89	48.465	1	291060			39384	193	26709	26805	39878	39878					0.09066930965661868
STLPPVKSK	9	Unmodified	_STLPPVKSK_					0	0	0		ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant;ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant;ARFGEF1|p.G612Vfs*2|1|0.33|ENSG00000066777|chr8:67266964-67266964|T/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7925720214844	2	478.792392	955.570232	-0.25735	-0.00012322	-0.53273	-0.00025507	-0.79008	-0.00037828	478.7923337257226	17.983	0.91989	17.983	17.883	18.803	0					39	21	3	0	0	0	0.037924	1	5207	5207		101.25	34.823	1	1863500			39385	193	26709	26805	39879	39879					0.09066930965661868
STLPQNFL	8	Unmodified	_STLPQNFL_					0	0	0			REV__NAB1|p.A182Rfs*34|1|0.39|ENSG00000138386|chr2:190659715-190659715|C/-|frameshift_variant	REV__NAB1|p.A182Rfs*34|1|0.39|ENSG00000138386|chr2:190659715-190659715|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.24969482421875	2	460.247818	918.481082	4.2473	0.0019548	-0.35464	-0.00016322	3.8927	0.0017916	460.24770074534655	30.66	0.22739	30.66	30.566	30.793	0					14	8	2	0	0	0	0.65276	1	10076	10076		40.573	0	1	120140	+		39386	14974	26710	26806	39880	39880					0.01858096006139931
STLPRISLK	9	Unmodified	_STLPRISLK_					0	0	0		BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.81890869140625	2	507.818941	1013.62333	-0.029724	-1.5094E-05	-0.34718	-0.00017631	-0.37691	-0.0001914	507.8188209225285	24.695	0.13832	24.695	24.602	24.741	0					6	3	2	0	0	0	0.26699	1	8353	8353		38.754	9.5835	1	322650			39387	315	26711	26807	39881	39881					0.11706308748341598
STLPSQINLK	10	Unmodified	_STLPSQINLK_					0	0	0			REV__nc|ENSG00000127511|O75182-3|SIN3B	REV__nc|ENSG00000127511|O75182-3|SIN3B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8193359375	2	550.819138	1099.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.426	1	35.426	34.926	35.926	0								0	0	0	0.36846	1	13727	13727		40.058	1.3046	1		+		39388	14490	26712	26808	39882	39882					0.07789683677492576
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.3301391601562	2	573.32987	1144.64519	-0.12422	-7.122E-05	1.117	0.00064039	0.99274	0.00056917	573.3303372402057	34.254	0.67103	34.254	34.06	34.731	0					40	17	3	0	0	0	0.39337	1	12894	12894		52.167	2.1337	1	1850600			39389	1341	26713	26809	39883	39883					0.0786506870622361
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.3302612304688	2	573.32987	1144.64519	0.072238	4.1416E-05	0.58645	0.00033623	0.65869	0.00037765	573.3301870493967	34.362	0.19292	34.362	34.285	34.478	0					11	8	2	0	0	0	0.33569	1	11577	11577		58.63	14.979	1	207650			39390	1341	26713	26809	39884	39884					0.0786506870622361
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.3302612304688	2	573.32987	1144.64519	2.0105	0.0011527	-1.1794	-0.00067617	0.83108	0.00047648	573.329158698426	34.577	0.2448	34.577	34.454	34.699	0					17	6	4	0	0	0	0.00014743	1	13326	13326		144.55	64.095	1	674490			39391	1341	26713	26809	39885	39885					0.0786506870622361
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.3292846679688	2	573.32987	1144.64519	0.61197	0.00035086	-0.12856	-7.3708E-05	0.48341	0.00027715	573.3298717265651	34.293	0.13101	34.293	34.255	34.386	0					7	4	2	0	0	0	0.20322	1	12133	12133		73.9	19.178	1	48128			39392	1341	26713	26809	39886	39886					0.0786506870622361
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.330322265625	2	573.32987	1144.64519	1.6596	0.00095148	-1.6302	-0.00093463	0.029396	1.6853E-05	573.3291869556082	34.53	0.2585	34.53	34.376	34.635	0					11	5	3	0	0	0	6.5347E-05	1	13233	13233		153.1	85.608	1	1127200			39393	1341	26713	26809	39887	39887					0.0786506870622361
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.330078125	2	573.32987	1144.64519	3.362	0.0019275	-2.1684	-0.0012432	1.1935	0.00068429	573.3282593611237	34.221	0.79488	34.221	34.069	34.864	0					34	16	3	0	0	0	0.25906	1	13275	13275		67.214	11.71	1	1685100			39394	1341	26713	26809	39888	39888					0.0786506870622361
STLRDITEQ	9	Unmodified	_STLRDITEQ_					0	0	0			REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7757568359375	2	531.774928	1061.5353	0.28826	0.00015329	0.25933	0.00013791	0.54759	0.0002912	531.7751756071276	13.225	0.24348	13.225	13.176	13.419	0					8	5	3	0	0	0	0.56843	1	3206	3206		18.262	11.949	1	718620	+		39395	17411	26714	26810	39889	39889					0.006996433670337865
STLRKVSTY	9	Unmodified	_STLRKVSTY_					0	0	0		ENSG00000187815|ENST00000372706|ZFP69	ENSG00000187815|ENST00000372706|ZFP69	ENSG00000187815|ENST00000372706|ZFP69	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.80078125	2	527.798206	1053.58186	3.4743	0.0018337	0.7247	0.00038249	4.199	0.0022162	527.7989664294053	42.255	0.35054	42.255	42.122	42.473	0					15	9	2	0	0	0	0.36892	1	16876	16876		29.15	0	1	208140			39396	7220	26715	26811	39890	39890					0.05721127988999797
STLRQKIRK	9	Unmodified	_STLRQKIRK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.2435607910156	3	377.243652	1128.70913	0.46086	0.00017386	-0.50922	-0.0001921	-0.048359	-1.8243E-05	377.2433790022431	15.76	0.16175	15.76	15.702	15.864	0					5	3	2	0	0	0	0.44593	1	4388	4388		37.812	4.9991	1	381640			39397	6998	26716	26812	39891	39891					0.14991893653836996
STLSLIDTK	9	Unmodified	_STLSLIDTK_					0	0	0			REV__ENSG00000275004|ENST00000626650|ZNF280B	REV__ENSG00000275004|ENST00000626650|ZNF280B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.279541015625	2	489.279315	976.544076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.302	1	31.302	30.802	31.802	0								0	0	0	0.30504	1	10760	10760		34.173	0	1		+		39398	17825	26717	26813	39892	39892					0.054866170035211326
STLSSTPSH	9	Unmodified	_STLSSTPSH_					0	0	0			REV__AMOT|p.Q392Lfs*49|1|0.09|ENSG00000126016|chrX:112815575-112815576|-/TCCA|frameshift_variant;REV__ENSG00000126016|ENST00000371959|AMOT	REV__ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.72064208984375	2	458.722164	915.429775	0.72202	0.00033121	-2.591	-0.0011885	-1.869	-0.00085734	458.72112189455567	14.37	0.32981	14.37	14.317	14.646	0					12	7	3	0	0	0	0.16524	1	3725	3725		65.803	1.5959	1	355340	+		39399	14455;12152	26718	26814	39893	39893					-0.031322727585575194
STLSTVISK	9	Unmodified	_STLSTVISK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2737731933594	2	468.274032	934.533512	0.032859	1.5387E-05	-0.67551	-0.00031632	-0.64265	-0.00030094	468.2737151607954	29.096	0.2194	29.096	29.005	29.224	0					17	8	3	0	0	0	0.063171	1	9154	9154		90.601	28.493	1	499790			39400	6474	26719	26815	39894	39894					0.06362634349102336
STLSTVISK	9	Unmodified	_STLSTVISK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2736511230469	2	468.274032	934.533512	0.30047	0.0001407	-0.82461	-0.00038614	-0.52414	-0.00024544	468.27358935445426	29.369	0.33809	29.369	29.245	29.584	0					20	8	4	0	0	0	0.0076184	1	10490	10490		146.79	56.185	1	3075900			39401	6474	26719	26815	39895	39895					0.06362634349102336
STLSTVISK	9	Unmodified	_STLSTVISK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.27362060546875	2	468.274032	934.533512	-0.12889	-6.0356E-05	-0.38266	-0.00017919	-0.51155	-0.00023955	468.27382886669994	29.384	0.3311	29.384	29.251	29.582	0					16	7	3	0	0	0	0.0023831	1	10846	10846		172.25	79.105	1	1228500			39402	6474	26719	26815	39896	39896					0.06362634349102336
STLSTVISK	9	Unmodified	_STLSTVISK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.27435302734375	2	468.274032	934.533512	-0.20444	-9.5733E-05	0.74049	0.00034675	0.53605	0.00025102	468.27435581415136	29.154	0.26129	29.154	29.064	29.326	0					13	7	3	0	0	0	0.035106	1	9763	9763		104.01	43.895	1	336040			39403	6474	26719	26815	39897	39897					0.06362634349102336
STLSTVISK	9	Unmodified	_STLSTVISK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2740478515625	2	468.274032	934.533512	-0.51418	-0.00024078	0.10611	4.9686E-05	-0.40808	-0.00019109	468.27406821542104	29.314	0.30885	29.314	29.207	29.515	0					14	6	4	0	0	0	0.014413	1	10710	10710		131.62	51.162	1	3297300			39404	6474	26719	26815	39898	39898					0.06362634349102336
STLTDSLVCK	10	Unmodified	_STLTDSLVCK_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant;ENST00000594885.1_1_19:3984132-3985378:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7772827148438	2	533.776082	1065.53761	1.1036	0.0005891	1.449	0.00077343	2.5526	0.0013625	533.7766634710852	35.294	0.14858	35.294	35.244	35.392	0					12	7	2	0	0	0	0.65051	1	11568	11568		28.081	1.3886	1	67946			39405	6014	26720	26816	39899	39899					0.007463557805067467
STLTDSLVCK	10	Unmodified	_STLTDSLVCK_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant;ENST00000594885.1_1_19:3984132-3985378:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7767333984375	2	533.776082	1065.53761	1.1194	0.00059749	0.93177	0.00049736	2.0511	0.0010948	533.7765954287012	35.583	0.40324	35.583	35.466	35.869	0					16	11	2	0	0	0	0.049549	1	13794	13794		109.48	51.248	1	331680			39406	6014	26720	26816	39900	39900					0.007463557805067467
STLTDSLVCK	10	Unmodified	_STLTDSLVCK_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant;ENST00000594885.1_1_19:3984132-3985378:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.77587890625	2	533.776082	1065.53761	1.7497	0.00093395	-0.83611	-0.0004463	0.91359	0.00048765	533.7754026795564	35.575	0.30558	35.575	35.49	35.796	0					14	8	2	0	0	0	0.50287	1	13792	13792		45.022	4.244	1	393920			39407	6014	26720	26816	39901	39901					0.007463557805067467
STLTVAVKK	9	Unmodified	_STLTVAVKK_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.79998779296875	2	473.800217	945.585882	-0.50792	-0.00024065	0.17651	8.363E-05	-0.33141	-0.00015702	473.8003087565021	20.928	0.13654	20.928	20.833	20.97	0					7	3	3	0	0	0	0.034359	1	6578	6578		104.75	25.296	1	727400			39408	4152	26721	26817	39902	39902					0.11091217482703541
STLTVAVKK	9	Unmodified	_STLTVAVKK_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.79986572265625	2	473.800217	945.585882	-0.60853	-0.00028832	0.29144	0.00013809	-0.31709	-0.00015024	473.8003392002768	20.805	0.1166	20.805	20.747	20.863	0					4	2	2	0	0	0	0.028876	1	6813	6813		110.12	22.366	1	308470			39409	4152	26721	26817	39903	39903					0.11091217482703541
STLTYRMTK	9	Unmodified	_STLTYRMTK_					0	0	0		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.7925415039062	2	550.792066	1099.56958	1.2907	0.00071091	-1.0339	-0.00056946	0.25681	0.00014145	550.791570456654	23.176	0.36559	23.176	23.077	23.442	0					24	10	3	0	0	0	0.0047071	1	6638	6638		159.28	74.36	1	2686600			39410	9620	26722	26818	39904	39904					0.023777682543141054
STLTYRMTK	9	Unmodified	_STLTYRMTK_					0	0	0		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7918701171875	2	550.792066	1099.56958	0.56263	0.00030989	-1.0762	-0.00059276	-0.51357	-0.00028287	550.7915980766948	23.482	0.66597	23.482	23.34	24.006	0					36	15	3	0	0	0	0.0015666	1	7765	7765		177.3	86.935	1	20880000			39411	9620	26722	26818	39905	39905					0.023777682543141054
STLTYRMTK	9	Unmodified	_STLTYRMTK_					0	0	0		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.7925415039062	2	550.792066	1099.56958	0.29891	0.00016464	-0.047422	-2.612E-05	0.25149	0.00013852	550.7922151865114	23.217	0.40226	23.217	23.12	23.522	0					35	13	5	0	0	0	0.090954	1	6923	6923		81.525	30.332	1	3437100			39412	9620	26722	26818	39906	39906					0.023777682543141054
STLTYRMTK	9	Unmodified	_STLTYRMTK_					0	0	0		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.7925415039062	2	550.792066	1099.56958	0.16639	9.1648E-05	0.50516	0.00027824	0.67155	0.00036989	550.7924184512931	23.387	0.16738	23.387	23.329	23.496	0					7	3	3	0	0	0	0.061298	1	8061	8061		91.265	41.729	1	279170			39413	9620	26722	26818	39907	39907					0.023777682543141054
STLTYRMTK	9	Unmodified	_STLTYRMTK_					0	0	0		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.7915649414062	2	550.792066	1099.56958	-1.3806	-0.0007604	1.6638	0.00091638	0.2832	0.00015599	550.7930891823679	23.244	0.44773	23.244	23.11	23.558	0					23	10	3	0	0	0	0.0047071	1	7049	7049		159.28	49.156	1	6106400			39414	9620	26722	26818	39908	39908					0.023777682543141054
STLTYRMTK	9	Oxidation (M)	_STLTYRM(Oxidation (M))TK_		STLTYRM(1)TK		STLTYRM(170)TK	0	0	1		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7901611328125	2	558.789524	1115.56449	0.52403	0.00029282	0.044122	2.4655E-05	0.56815	0.00031748	558.7896340883576	18.714	0.21456	18.714	18.588	18.803	0					18	5	4	0	0	0	0.0023831	1	5497	5497		172.25	67.502	1	1651900			39415	9620	26722	26819	39909	39909		387			0.011334643916825371
STLVHPELQP	10	Unmodified	_STLVHPELQP_					0	0	0		nc|ENSG00000090565|O75154-2|RAB11FIP3;ENSG00000090565|ENST00000262305|RAB11FIP3;ENST00000483002.1_1_16:524982-539001:+|nuORF;nc|ENSG00000090565|O75154-3|RAB11FIP3	nc|ENSG00000090565|O75154-2|RAB11FIP3	nc|ENSG00000090565|O75154-2|RAB11FIP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.20465087890625	3	374.204751	1119.59242	-0.34555	-0.0001293	0.049486	1.8518E-05	-0.29606	-0.00011079	374.2047534506309	22.246	0.31538	22.246	22.089	22.404	0					15	6	4	0	0	0	0.68218	1	7379	7379		29.17	2.4204	1	3187600			39416	1838	26723	26820	39910	39910					0.03741110643431966
STLVLNVKI	9	Unmodified	_STLVLNVKI_					0	0	0		ENST00000380916.8_1_9:14611214-14611316:-|nuORF	ENST00000380916.8_1_9:14611214-14611316:-|nuORF	ENST00000380916.8_1_9:14611214-14611316:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.54638671875	3	329.546337	985.617182	0.38961	0.00012839	-0.51674	-0.00017029	-0.12713	-4.1897E-05	329.5461591061011	27.972	0.93137	27.972	27.617	28.548	0					47	19	3	0	0	0	0.46194	1	10113	10113		36.447	2.5251	1	618700			39417	9104	26724	26821	39911	39911					0.12379790516808953
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7789611816406	2	488.778428	975.542302	-0.09119	-4.4572E-05	0.68191	0.0003333	0.59072	0.00028873	488.77883077041764	30.53	0.16927	30.53	30.449	30.618	0					11	6	3	0	0	0	0.07136	1	9755	9755		87.696	36.361	1	104810			39418	1685	26725	26822	39912	39912					0.05355284713914443
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7778625488281	2	488.778428	975.542302	-0.023832	-1.1648E-05	-1.4922	-0.00072936	-1.516	-0.000741	488.77762083025243	30.497	0.16929	30.497	30.441	30.61	0					9	6	2	0	0	0	0.07136	1	9730	9730		87.696	38.486	1	58888			39419	1685	26725	26822	39913	39913					0.05355284713914443
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.77813720703125	2	488.778428	975.542302	0.76812	0.00037544	-1.3851	-0.00067699	-0.61695	-0.00030155	488.77774103916164	30.839	0.22342	30.839	30.742	30.966	0					18	5	4	0	0	0	0.014688	1	11171	11171		131.03	43.277	1	870310			39420	1685	26725	26822	39914	39914					0.05355284713914443
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.778076171875	2	488.778428	975.542302	-0.40428	-0.0001976	-0.59894	-0.00029275	-1.0032	-0.00049035	488.7782533365649	30.83	0.3583	30.83	30.641	30.999	0					12	8	2	0	0	0	0.012231	1	11166	11166		136.27	59.494	1	440960			39421	1685	26725	26822	39915	39915					0.05355284713914443
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7783508300781	2	488.778428	975.542302	-1.2506	-0.00061129	0.79529	0.00038872	-0.45536	-0.00022257	488.7788630941589	30.592	0.21852	30.592	30.501	30.719	0					18	8	3	0	0	0	0.012915	1	10069	10069		134.81	58.037	1	315270			39422	1685	26725	26822	39916	39916					0.05355284713914443
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7781066894531	2	488.778428	975.542302	-0.17694	-8.6484E-05	-0.72689	-0.00035529	-0.90383	-0.00044177	488.7781027256223	30.585	0.19594	30.585	30.504	30.7	0					11	5	3	0	0	0	0.019882	1	10443	10443		122.18	39.871	1	270170			39423	1685	26725	26822	39917	39917					0.05355284713914443
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7781677246094	2	488.778428	975.542302	0.78535	0.00038386	-1.522	-0.00074394	-0.73669	-0.00036008	488.77776300411534	30.772	0.26644	30.772	30.663	30.929	0					17	5	4	0	0	0	0.014688	1	11440	11440		131.03	48.726	1	2464200			39424	1685	26725	26822	39918	39918					0.05355284713914443
STMAIIVNK	9	Unmodified	_STMAIIVNK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7781982421875	2	488.778428	975.542302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.832	1	30.832	30.332	31.332	0								0	0	0	0.00042866	1	11458	11458		131.03	40.255	1				39425	1685	26725	26822	39919	39919					0.05355284713914443
STMDKFNVTK	10	Unmodified	_STMDKFNVTK_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.7945556640625	2	585.794806	1169.57506	1.1667	0.00068345	-1.8955	-0.0011104	-0.72878	-0.00042692	585.7938139989949	25.73	0.092133	25.73	25.664	25.756	0					8	2	4	0	0	0	0.026945	1	8830	8830		120.27	42.955	1	341710			39426	7337	26726	26823	39920	39920					-0.0029455295389198
STMDKFNVTK	10	Unmodified	_STMDKFNVTK_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.7950439453125	2	585.794806	1169.57506	1.4989	0.00087806	-2.0873	-0.0012227	-0.58834	-0.00034464	585.7941188029965	25.659	0.17019	25.659	25.548	25.718	0					8	3	3	0	0	0	0.39647	1	9027	9027		56.632	15.206	1	517010			39427	7337	26726	26823	39921	39921					-0.0029455295389198
STMDLVKSK	9	Unmodified	_STMDLVKSK_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.77337646484375	2	504.773342	1007.53213	-0.06601	-3.332E-05	-0.16945	-8.5533E-05	-0.23546	-0.00011885	504.77330231934485	22.393	0.19405	22.393	22.307	22.501	0					9	5	2	0	0	0	0.054723	1	6327	6327		93.598	45.682	1	522240			39428	2489	26727	26824	39922	39922					0.028666769886967813
STMDLVKSK	9	Unmodified	_STMDLVKSK_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7733154296875	2	504.773342	1007.53213	-0.052488	-2.6495E-05	-0.48493	-0.00024478	-0.53742	-0.00027128	504.7731987852442	22.721	0.33908	22.721	22.548	22.887	0					23	8	5	0	0	0	0.0015666	1	7428	7428		177.3	84.109	1	3056800			39429	2489	26727	26824	39923	39923					0.028666769886967813
STMDLVKSK	9	Unmodified	_STMDLVKSK_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7732849121094	2	504.773342	1007.53213	-0.75143	-0.0003793	0.61444	0.00031015	-0.13699	-6.9147E-05	504.77370219205443	22.467	0.15854	22.467	22.376	22.535	0					7	4	2	0	0	0	0.047855	1	6607	6607		96.034	44.841	1	358130			39430	2489	26727	26824	39924	39924					0.028666769886967813
STMDLVKSK	9	Unmodified	_STMDLVKSK_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7731018066406	2	504.773342	1007.53213	-0.43823	-0.00022121	0.089742	4.5299E-05	-0.34849	-0.00017591	504.7733497124018	22.636	0.31071	22.636	22.534	22.845	0					10	6	2	0	0	0	0.015992	1	7700	7700		128.6	63.137	1	2653200			39431	2489	26727	26824	39925	39925					0.028666769886967813
STMDLVKSK	9	Unmodified	_STMDLVKSK_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.77294921875	2	504.773342	1007.53213	-2.0025	-0.0010108	0.96827	0.00048876	-1.0342	-0.00052205	504.77387180805584	22.513	0.19817	22.513	22.362	22.56	0					8	4	2	0	0	0	0.037712	1	6726	6726		101.46	30.164	1	310190			39432	2489	26727	26824	39926	39926					0.028666769886967813
STMDYIGLTF	10	Unmodified	_STMDYIGLTF_					0	0	0			REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3	REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.1817321777344	3	383.182847	1146.52671	0.27173	0.00010412	-3.1964	-0.0012248	-2.9247	-0.0011207	383.1815048584026	24.59	0.1462	24.59	24.48	24.626	0					5	3	2	0	0	0	0.65051	1	7694	7694		28.081	4.7036	1	47767	+		39433	15867	26728	26825	39927	39927					-0.04069046593826897
STMEGGTLK	9	Unmodified	_STMEGGTLK_					0	0	0		ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.T943Pfs*5|1|0.19|ENSG00000197943|chr16:81934513-81934513|A/-|frameshift_variant;ENSG00000197943|ENST00000564138|PLCG2	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.22845458984375	2	462.228768	922.442982	-0.14736	-6.8114E-05	-0.54998	-0.00025422	-0.69734	-0.00032233	462.22853803333373	20.638	0.21746	20.638	20.478	20.696	0					6	4	2	0	0	0	0.19952	1	6729	6729		61.691	4.9702	1	310480			39434	7510	26729	26826	39928	39928					-0.02134157970817796
STMEQLVEK	9	Unmodified	_STMEQLVEK_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7684326171875	2	532.768257	1063.52196	-0.33763	-0.00017988	1.342	0.000715	1.0044	0.00053512	532.769006286804	30.736	0.16966	30.736	30.645	30.815	0					8	6	2	0	0	0	0.27123	1	10121	10121		53.089	0	1	70447			39435	3872	26730	26827	39929	39929					-0.007259307365529821
STMEQLVEK	9	Unmodified	_STMEQLVEK_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.768310546875	2	532.768257	1063.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.757	1	30.757	30.257	31.257	0								0	0	0	0.20646	1	10513	10513		50.034	10.781	1				39436	3872	26730	26827	39930	39930					-0.007259307365529821
STMEQLVEK	9	Unmodified	_STMEQLVEK_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.768310546875	2	532.768257	1063.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.947	1	30.947	30.447	31.447	0								0	0	0	0.077333	1	11515	11515		78.264	19.482	1				39437	3872	26730	26827	39931	39931					-0.007259307365529821
STMGHDAGLF	10	Unmodified	_STMGHDAGLF_					0	0	0			REV__ENST00000470506.1_1_2:58390551-58390605:-|nuORF	REV__ENST00000470506.1_1_2:58390551-58390605:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2325439453125	2	518.231842	1034.44913	0.46297	0.00023993	-0.025395	-1.3161E-05	0.43758	0.00022677	518.2318369494046	25.346	0.40117	25.346	25.214	25.615	0					33	14	3	0	0	0	0.44469	1	7603	7603		51.335	5.3632	1	157200	+		39438	19468	26731	26828	39932	39932					-0.06671639739329294
STMGHDAGLF	10	Unmodified	_STMGHDAGLF_					0	0	0			REV__ENST00000470506.1_1_2:58390551-58390605:-|nuORF	REV__ENST00000470506.1_1_2:58390551-58390605:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.23193359375	2	518.231842	1034.44913	0.052093	2.6996E-05	-0.4135	-0.00021429	-0.36141	-0.00018729	518.231810934588	25.581	0.80116	25.581	25.525	26.326	0					39	17	4	0	0	0	0.30737	1	8765	8765		66.429	6.311	1	1673500	+		39439	19468	26731	26828	39933	39933					-0.06671639739329294
STMGHDAGLF	10	Unmodified	_STMGHDAGLF_					0	0	0			REV__ENST00000470506.1_1_2:58390551-58390605:-|nuORF	REV__ENST00000470506.1_1_2:58390551-58390605:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2328491210938	2	518.231842	1034.44913	0.10509	5.446E-05	1.187	0.00061512	1.292	0.00066958	518.2324696115222	25.479	0.66039	25.479	25.282	25.942	0					36	18	3	0	0	0	0.54197	1	7870	7870		40.778	2.9666	1	347370	+		39440	19468	26731	26828	39934	39934					-0.06671639739329294
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2195739746094	2	480.219888	958.425224	0.032666	1.5687E-05	-1.4057	-0.00067503	-1.373	-0.00065934	480.21957580447344	24.758	0.31204	24.758	24.653	24.965	0					24	9	4	0	0	0	0.014688	1	7332	7332		131.03	86.5	1	752160			39441	1647	26732	26829	39935	39935					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.21966552734375	2	480.219888	958.425224	0.50061	0.0002404	-1.5868	-0.000762	-1.0862	-0.0005216	480.21953992195904	25.022	0.48442	25.022	24.941	25.426	0					31	11	5	0	0	0	0.0012031	1	8488	8488		180.93	112.14	1	6836600			39442	1647	26732	26829	39936	39936					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2195739746094	2	480.219888	958.425224	-1.3852	-0.00066521	0.066752	3.2056E-05	-1.3185	-0.00063316	480.22024144500006	24.781	0.32702	24.781	24.677	25.004	0					36	11	4	0	0	0	0.025517	1	7612	7612		113.41	72.839	1	1580400			39443	1647	26732	26829	39937	39937					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.219970703125	2	480.219888	958.425224	0.67429	0.00032381	-1.16	-0.00055706	-0.48572	-0.00023325	480.219661728953	24.999	0.56886	24.999	24.89	25.459	0					33	11	4	0	0	0	0.0061615	1	8827	8827		153.04	99.684	1	9416900			39444	1647	26732	26829	39938	39938					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2196960449219	2	480.219888	958.425224	0.056562	2.7162E-05	-1.2483	-0.00059945	-1.1917	-0.00057229	480.2195988746583	24.836	0.10844	24.836	24.784	24.892	0					6	2	3	0	0	0	0.0792	1	7816	7816		84.916	40.799	1	177570			39445	1647	26732	26829	39939	39939					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.21966552734375	2	480.219888	958.425224	-0.30458	-0.00014627	-0.34567	-0.000166	-0.65025	-0.00031226	480.219727092595	24.867	0.37157	24.867	24.771	25.142	0					12	8	2	0	0	0	0.0033339	1	7807	7807		166.68	107.9	1	853630			39446	1647	26732	26829	39940	39940					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2193908691406	2	480.219888	958.425224	-2.9257	-0.001405	1.3312	0.00063928	-1.5945	-0.00076569	480.22085315580847	24.853	0.2412	24.853	24.758	24.999	0					15	5	4	0	0	0	0.0406	1	7799	7799		98.629	57.851	1	968710			39447	1647	26732	26829	39941	39941					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.21954345703125	2	480.219888	958.425224	-0.64543	-0.00030995	-0.66617	-0.00031991	-1.3116	-0.00062986	480.2198797200422	24.971	0.31001	24.971	24.869	25.179	0					16	6	4	0	0	0	0.0033339	1	8671	8671		166.68	95.301	1	1515500			39448	1647	26732	26829	39942	39942					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2195129394531	2	480.219888	958.425224	0.9294	0.00044632	-1.7143	-0.00082322	-0.78486	-0.0003769	480.21937083738385	24.955	0.51	24.955	24.854	25.364	0					33	10	5	0	0	0	0.0033339	1	8662	8662		166.68	115.34	1	10184000			39449	1647	26732	26829	39943	39943					-0.0556519649734355
STMGYMAAK	9	Unmodified	_STMGYMAAK_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2195739746094	2	480.219888	958.425224	2.3187	0.0011135	-3.43	-0.0016472	-1.1114	-0.0005337	480.2185876534815	24.937	0.46091	24.937	24.837	25.298	0					31	9	5	0	0	0	0.0061615	1	8676	8676		153.04	92.064	1	6352000			39450	1647	26732	26829	39944	39944					-0.0556519649734355
STMGYMAAK	9	Oxidation (M)	_STM(Oxidation (M))GYMAAK_		STM(1)GYMAAK		STM(37)GYM(-37)AAK	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2170715332031	2	488.217346	974.420138	0.40383	0.00019715	-1.0474	-0.00051136	-0.64357	-0.0003142	488.21691765006256	20.008	0.34004	20.008	19.886	20.226	0					9	7	2	0	0	0	0.098791	1	6142	6142		79.713	29.688	2	186240			39451	1647	26732	26830	39945	39945		78			-0.0680950035995238
STMGYMAAK	9	Oxidation (M)	_STM(Oxidation (M))GYMAAK_		STM(1)GYMAAK		STM(53)GYM(-53)AAK	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2170715332031	2	488.217346	974.420138	-0.079598	-3.8861E-05	-1.1288	-0.00055112	-1.2084	-0.00058998	488.21694417203975	19.89	0.32122	19.89	19.775	20.096	0					15	6	3	0	0	0	0.030949	1	6373	6373		108.09	42.284	2	450170			39452	1647	26732	26830	39946	39946		78			-0.0680950035995238
STMGYMMAK	9	Oxidation (M)	_STMGYM(Oxidation (M))MAK_		STM(0.001)GYM(0.857)M(0.142)AK		STM(-30)GYM(7.8)M(-7.8)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2190551757812	2	518.219031	1034.42351	0.45004	0.00023322	-0.2442	-0.00012655	0.20584	0.00010667	518.2189136880302	25.197	0.28744	25.197	24.977	25.265	0					8	4	2	0	0	0	0.14603	1	7549	7549		68.787	31.628	3	352970			39453	1916	26733	26831	39947	39947		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STMGYM(Oxidation (M))MAK_		STMGYM(0.892)M(0.108)AK		STM(-34)GYM(9.2)M(-9.2)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2193603515625	2	518.219031	1034.42351	0.052416	2.7163E-05	-0.18612	-9.6452E-05	-0.13371	-6.9289E-05	518.2193039988093	25.489	0.35805	25.489	25.226	25.584	0					13	4	4	0	0	0	0.19605	1	8702	8702		62.107	19.711	3	2015800			39454	1916	26733	26831	39948	39948		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STMGYM(Oxidation (M))MAK_		STMGYM(0.5)M(0.5)AK		STM(-56)GYM(0)M(0)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.218994140625	2	518.219031	1034.42351	0.10791	5.5922E-05	-0.73934	-0.00038314	-0.63143	-0.00032722	518.2191602367476	25.256	0.25286	25.256	25.127	25.38	0					17	8	3	0	0	0	0.055856	1	7810	7810		93.195	45.28	3	476540			39455	1916	26733	26831	39949	39949		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STM(Oxidation (M))GYMMAK_		STM(1)GYMMAK		STM(74)GYM(-74)M(-89)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.218994140625	2	518.219031	1034.42351	1.0655	0.00055218	-1.9648	-0.0010182	-0.89928	-0.00046603	518.2185063738563	24.569	0.46039	24.569	24.463	24.924	0					26	9	4	0	0	0	0.012915	1	8603	8603		134.81	88.859	3	1171200			39456	1916	26733	26831	39950	39950		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STMGYMM(Oxidation (M))AK_		STMGYM(0.05)M(0.95)AK		STM(-84)GYM(-13)M(13)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2191772460938	2	518.219031	1034.42351	1.5755	0.00081645	-2.5176	-0.0013047	-0.94212	-0.00048823	518.2183121513895	25.5	0.31158	25.5	25.341	25.653	0					17	6	5	0	0	0	0.015338	1	9043	9043		129.68	68.711	3	2752800			39457	1916	26733	26831	39951	39951		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STM(Oxidation (M))GYMMAK_		STM(0.999)GYM(0.001)MAK		STM(31)GYM(-31)M(-42)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2203369140625	2	518.219031	1034.42351	1.2648	0.00065543	0.056297	2.9174E-05	1.3211	0.00068461	518.2190199324755	24.399	0.31367	24.399	24.312	24.626	0					13	7	3	0	0	0	0.22377	1	7596	7596		58.782	28.278	3	130960			39458	1916	26733	26831	39952	39952		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STMGYMM(Oxidation (M))AK_		STMGYM(0.01)M(0.99)AK		STM(-68)GYM(-20)M(20)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2191772460938	2	518.219031	1034.42351	-1.4102	-0.00073079	1.1804	0.00061172	-0.22977	-0.00011907	518.2200768740071	25.335	0.18728	25.335	25.198	25.386	0					13	4	4	0	0	0	0.034359	1	8025	8025		104.75	56.831	3	539930			39459	1916	26733	26831	39953	39953		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STM(Oxidation (M))GYMMAK_		STM(1)GYMMAK		STM(59)GYM(-59)M(-81)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2195434570312	2	518.219031	1034.42351	0.25554	0.00013242	-0.50221	-0.00026026	-0.24668	-0.00012783	518.2192443920924	24.538	0.59865	24.538	24.38	24.979	0					31	12	5	0	0	0	0.028876	1	8467	8467		110.12	62.463	3	1477400			39460	1916	26733	26831	39954	39954		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STMGYMM(Oxidation (M))AK_		STMGYM(0.129)M(0.871)AK		STM(-63)GYM(-8.3)M(8.3)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2196655273438	2	518.219031	1034.42351	1.5809	0.00081927	-2.7198	-0.0014094	-1.1388	-0.00059017	518.2184328554042	25.407	0.36916	25.407	25.247	25.616	0					23	7	5	0	0	0	0.055856	1	8878	8878		93.195	18.94	3	1151400			39461	1916	26733	26831	39955	39955		87;88;89			-0.09232573577605763
STMGYMMAK	9	Oxidation (M)	_STMGYMM(Oxidation (M))AK_		STMGYM(0.029)M(0.971)AK		STM(-62)GYM(-15)M(15)AK	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2196655273438	2	518.219031	1034.42351	3.3424	0.0017321	-4.0314	-0.0020892	-0.68909	-0.0003571	518.2176092393239	25.41	0.42043	25.41	25.127	25.548	0					15	5	4	0	0	0	0.10915	1	8870	8870		77.318	14.011	3	2666800			39462	1916	26733	26831	39956	39956		87;88;89			-0.09232573577605763
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2222595214844	2	510.221574	1018.42859	-0.11645	-5.9415E-05	0.10491	5.3526E-05	-0.011542	-5.8889E-06	510.2221571753745	30.189	0.40332	30.189	30.017	30.42	0					41	14	4	0	0	0	0.016683	1	9575	9575		127.46	68.68	1	2101300			39463	1916	26733	26832	39957	39957					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.22216796875	2	510.221574	1018.42859	-0.0095406	-4.8678E-06	-0.4919	-0.00025098	-0.50144	-0.00025585	510.22187359069613	30.441	0.64352	30.441	30.272	30.916	0					50	15	6	0	0	0	0.0061615	1	10961	10961		153.04	78.519	1	11010000			39464	1916	26733	26832	39958	39958					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2232360839844	2	510.221574	1018.42859	-0.44091	-0.00022496	0.22259	0.00011357	-0.21831	-0.00011139	510.2222946566434	30.239	0.41295	30.239	30.096	30.509	0					45	14	5	0	0	0	0.037569	1	9885	9885		101.6	50.408	1	2786900			39465	1916	26733	26832	39959	39959					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.22216796875	2	510.221574	1018.42859	-0.32394	-0.00016528	0.14511	7.4038E-05	-0.17884	-9.1246E-05	510.2218706235325	30.251	0.15279	30.251	30.156	30.309	0					9	5	2	0	0	0	0.24095	1	9902	9902		56.721	28.64	1	118970			39466	1916	26733	26832	39960	39960					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.222412109375	2	510.221574	1018.42859	1.1968	0.00061061	-1.2807	-0.00065346	-0.083973	-4.2845E-05	510.2214538544124	30.456	0.83772	30.456	30.35	31.188	0					50	18	5	0	0	0	5.1026E-05	1	11371	11371		195.81	118.97	1	19980000			39467	1916	26733	26832	39961	39961					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2240295410156	2	510.221574	1018.42859	-0.422	-0.00021531	0.46439	0.00023694	0.042397	2.1632E-05	510.22259830960076	30.44	0.2996	30.44	30.334	30.633	0					18	6	4	0	0	0	0.12239	1	11368	11368		74.255	36.444	1	577820			39468	1916	26733	26832	39962	39962					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2218322753906	2	510.221574	1018.42859	0.28536	0.0001456	-1.119	-0.00057091	-0.83359	-0.00042531	510.22158303223074	30.254	0.33583	30.254	30.106	30.442	0					30	8	5	0	0	0	0.0061615	1	10258	10258		153.04	100.74	1	1647500			39469	1916	26733	26832	39963	39963					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.22235107421875	2	510.221574	1018.42859	-1.8033	-0.00092009	1.4751	0.00075262	-0.32822	-0.00016747	510.22289009135403	30.238	0.37053	30.238	30.133	30.504	0					34	9	5	0	0	0	0.0033339	1	10250	10250		166.68	91.635	1	2780900			39470	1916	26733	26832	39964	39964					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2216796875	2	510.221574	1018.42859	1.3717	0.00069988	-2.5313	-0.0012915	-1.1595	-0.00059163	510.22080308176834	30.386	0.65215	30.386	30.277	30.929	0					44	13	6	0	0	0	0.0012031	1	11230	11230		180.93	112.14	1	8303100			39471	1916	26733	26832	39965	39965					-0.07988269714985563
STMGYMMAK	9	Unmodified	_STMGYMMAK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2218322753906	2	510.221574	1018.42859	3.0491	0.0015557	-3.2037	-0.0016346	-0.15453	-7.8843E-05	510.22033013591647	30.417	0.50517	30.417	30.309	30.814	0					36	10	4	0	0	0	0.0012031	1	11243	11243		180.93	101.47	1	20668000			39472	1916	26733	26832	39966	39966					-0.07988269714985563
STMGYMMAKK	10	Unmodified	_STMGYMMAKK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.2689819335938	2	574.269055	1146.52356	1.0442	0.00059966	-1.762	-0.0010118	-0.71776	-0.00041219	574.2686084632008	24.47	0.15292	24.47	24.388	24.541	0					10	4	3	0	0	0	0.60281	1	7233	7233		33.922	10.879	1	296890			39473	1916	26734	26833	39967	39967					-0.04384336243811049
STMGYMMAKK	10	Unmodified	_STMGYMMAKK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.1817626953125	3	383.181796	1146.52356	0.83843	0.00032127	-1.6758	-0.00064213	-0.83735	-0.00032086	383.18148000720623	24.747	0.25711	24.747	24.656	24.914	0					20	6	4	0	0	0	0.49411	1	8380	8380		58.246	22.628	1	2903400			39474	1916	26734	26833	39968	39968					-0.04384336243811049
STMGYMMAKK	10	Unmodified	_STMGYMMAKK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.269287109375	2	574.269055	1146.52356	-0.11091	-6.369E-05	0.19329	0.000111	0.082382	4.731E-05	574.269700201227	24.759	0.337	24.759	24.643	24.98	0					22	8	5	0	0	0	0.23612	1	8371	8371		75.043	20.267	1	1577200			39475	1916	26734	26833	39969	39969					-0.04384336243811049
STMGYMMAKK	10	Unmodified	_STMGYMMAKK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.26953125	2	574.269055	1146.52356	-0.17836	-0.00010243	0.61726	0.00035447	0.4389	0.00025205	574.2700265527776	24.737	0.26246	24.737	24.628	24.89	0					18	5	5	0	0	0	0.073977	1	8680	8680		101.25	51.811	1	1845900			39476	1916	26734	26833	39970	39970					-0.04384336243811049
STMGYMMAKK	10	Unmodified	_STMGYMMAKK_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.1818542480469	3	383.181796	1146.52356	0.60147	0.00023047	-1.2601	-0.00048285	-0.65864	-0.00025238	383.1817668478296	24.67	0.25718	24.67	24.611	24.869	0					22	5	6	0	0	0	0.49411	1	8546	8546		58.246	29.67	1	2184700			39477	1916	26734	26833	39971	39971					-0.04384336243811049
STMKRPTPT	9	Unmodified	_STMKRPTPT_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.77008056640625	2	509.771134	1017.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.052	1	14.052	13.552	14.552	0								0	0	0	0.31222	1	2980	2980		19.104	9.3979	1		+		39478	14158	26735	26834	39972	39972					0.019652125657671604
STMKTMEDK	9	Unmodified	_STMKTMEDK_					0	0	0		ENST00000555683.1_1_14:35005207-35008876:-|nuORF;EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.7468872070312	2	535.746467	1069.47838	-0.54148	-0.0002901	0.17233	9.2324E-05	-0.36916	-0.00019777	535.7469274469588	16.673	0.098827	16.673	16.626	16.725	0					9	4	3	0	0	0	0.27123	1	4041	4041		53.089	13.836	1	82718			39479	869	26736	26835	39973	39973					-0.05357863505332716
STMKTMEDK	9	Unmodified	_STMKTMEDK_					0	0	0		ENST00000555683.1_1_14:35005207-35008876:-|nuORF;EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7468872070312	2	535.746467	1069.47838	1.822	0.00097615	-1.3956	-0.00074766	0.42649	0.00022849	535.7459506473682	16.854	0.21154	16.854	16.801	17.013	0					8	4	3	0	0	0	0.0088974	1	4916	4916		143.37	49.776	1	480940			39480	869	26736	26835	39974	39974					-0.05357863505332716
STMKTMEDK	9	Unmodified	_STMKTMEDK_					0	0	0		ENST00000555683.1_1_14:35005207-35008876:-|nuORF;EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7470092773438	2	535.746467	1069.47838	1.0725	0.00057459	0.057164	3.0625E-05	1.1297	0.00060521	535.7461385305152	16.714	0.085951	16.714	16.666	16.752	0					5	3	2	0	0	0	0.38666	1	4028	4028		42.864	6.4175	1	47040			39481	869	26736	26835	39975	39975					-0.05357863505332716
STMKTMEDK	9	Unmodified	_STMKTMEDK_					0	0	0		ENST00000555683.1_1_14:35005207-35008876:-|nuORF;EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7471313476562	2	535.746467	1069.47838	-1.3708	-0.00073438	1.8386	0.00098503	0.46786	0.00025066	535.7475434075336	16.708	0.14861	16.708	16.657	16.806	0					8	5	2	0	0	0	0.48623	1	4023	4023		33.922	1.9668	1	92859			39482	869	26736	26835	39976	39976					-0.05357863505332716
STMKTMEDK	9	Unmodified	_STMKTMEDK_					0	0	0		ENST00000555683.1_1_14:35005207-35008876:-|nuORF;EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7472534179688	2	535.746467	1069.47838	3.3597	0.0017999	-3.8744	-0.0020757	-0.51472	-0.00027576	535.7448191845626	16.87	0.16094	16.87	16.812	16.973	0					11	3	4	0	0	0	0.063171	1	4772	4772		90.601	10.888	1	446800			39483	869	26736	26835	39977	39977					-0.05357863505332716
STMKTYVSK	9	Unmodified	_STMKTYVSK_					0	0	0		ENST00000495008.5_1_3:108373019-108406879:+|nuORF;ENSG00000198919|ENST00000361582|DZIP3	ENST00000495008.5_1_3:108373019-108406879:+|nuORF	ENST00000495008.5_1_3:108373019-108406879:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7736206054688	2	522.773342	1043.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.119	1	19.119	18.619	19.619	0								0	0	0	0.26578	1	5989	5989		41.427	5.8083	1				39484	7641	26737	26836	39978	39978					0.012106769886713664
STMKTYVSK	9	Unmodified	_STMKTYVSK_					0	0	0		ENST00000495008.5_1_3:108373019-108406879:+|nuORF;ENSG00000198919|ENST00000361582|DZIP3	ENST00000495008.5_1_3:108373019-108406879:+|nuORF	ENST00000495008.5_1_3:108373019-108406879:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7738647460938	2	522.773342	1043.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.972	1	18.972	18.472	19.472	0								0	0	0	0.33579	1	5059	5059		28.081	2.5074	1				39485	7641	26737	26836	39979	39979					0.012106769886713664
STMKTYVSK	9	Unmodified	_STMKTYVSK_					0	0	0		ENST00000495008.5_1_3:108373019-108406879:+|nuORF;ENSG00000198919|ENST00000361582|DZIP3	ENST00000495008.5_1_3:108373019-108406879:+|nuORF	ENST00000495008.5_1_3:108373019-108406879:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.774169921875	2	522.773342	1043.53213	0.45182	0.0002362	0.82331	0.00043041	1.2751	0.0006666	522.7738790239486	19.064	0.16507	19.064	18.997	19.162	0					7	3	3	0	0	0	0.31937	1	5833	5833		48.602	7.8234	1	301910			39486	7641	26737	26836	39980	39980					0.012106769886713664
STMLATKTVK	10	Unmodified	_STMLATKTVK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-5|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.3101196289062	2	540.310092	1078.60563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.585	1	20.585	20.085	21.085	0								0	0	0	0.019778	1	6694	6694		99.013	26.134	1				39487	3494	26738	26837	39981	39981					0.0694722543116768
STMLQAIER	9	Unmodified	_STMLQAIER_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7767944335938	2	524.776416	1047.53828	1.8506	0.00097115	-1.2161	-0.00063816	0.63454	0.00033299	524.7755615877815	36.422	0.47163	36.422	36.323	36.795	0					25	13	3	0	0	0	0.017741	1	13729	13729		125.71	42.962	1	717960			39488	6864	26739	26838	39982	39982					0.01641195220213376
STMLQAIER	9	Unmodified	_STMLQAIER_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.77783203125	2	524.776416	1047.53828	1.1522	0.00060465	0.36274	0.00019036	1.5149	0.000795	524.7763993584327	36.176	0.21783	36.176	36.103	36.321	0					12	8	2	0	0	0	0.11635	1	12941	12941		75.652	17.422	1	87081			39489	6864	26739	26838	39983	39983					0.01641195220213376
STMLQAIER	9	Unmodified	_STMLQAIER_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7767333984375	2	524.776416	1047.53828	1.6261	0.00085335	-0.99198	-0.00052057	0.63414	0.00033278	524.7759386726589	36.371	0.46384	36.371	36.115	36.579	0					16	9	2	0	0	0	0.034688	1	14116	14116		104.42	42.316	1	1672600			39490	6864	26739	26838	39984	39984					0.01641195220213376
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.771484375	2	609.771339	1217.52813	1.5833	0.00096545	-1.8621	-0.0011355	-0.27884	-0.00017003	609.7704219386393	18.83	0.12487	18.83	18.755	18.88	0					5	3	2	0	0	0	0.3077	1	4748	4748		61.765	22.512	1	122490			39491	4938	26740	26839	39985	39985					-0.07193735776672838
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.7716064453125	2	609.771339	1217.52813	0.16297	9.9373E-05	-0.40635	-0.00024778	-0.24339	-0.00014841	609.7714340444123	19.129	0.26636	19.129	18.965	19.231	0					19	6	4	0	0	0	0.093595	1	5708	5708		91.265	43.35	1	1013600			39492	4938	26740	26839	39986	39986					-0.07193735776672838
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.7706909179688	2	609.771339	1217.52813	-0.62412	-0.00038057	0.05129	3.1275E-05	-0.57283	-0.00034929	609.7716517915383	18.826	0.2623	18.826	18.68	18.943	0					19	8	4	0	0	0	0.18431	1	4969	4969		76.17	26.634	1	334780			39493	4938	26740	26839	39987	39987					-0.07193735776672838
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.7713623046875	2	609.771339	1217.52813	0.86031	0.00052459	-1.319	-0.00080426	-0.45865	-0.00027967	609.7709416572327	19.026	0.26509	19.026	18.867	19.132	0					19	5	5	0	0	0	0.001214	1	5954	5954		131.12	81.58	1	2373700			39494	4938	26740	26839	39988	39988					-0.07193735776672838
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	609.7715454101562	2	609.771339	1217.52813	0.42086	0.00025663	-0.78254	-0.00047717	-0.36168	-0.00022054	609.771237994972	18.933	0.31595	18.933	18.717	19.033	0					15	7	4	0	0	0	0.17294	1	5033	5033		77.533	41.915	1	258080			39495	4938	26740	26839	39989	39989					-0.07193735776672838
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	609.7708740234375	2	609.771339	1217.52813	-1.965	-0.0011982	1.9316	0.0011779	-0.033404	-2.0369E-05	609.7726123438949	18.924	0.18359	18.924	18.792	18.975	0					10	4	3	0	0	0	0.11154	1	5026	5026		86.882	35.689	1	232110			39496	4938	26740	26839	39990	39990					-0.07193735776672838
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.7718505859375	2	609.771339	1217.52813	1.5004	0.00091489	-1.8679	-0.001139	-0.3675	-0.00022409	609.7705525481708	19.039	0.31542	19.039	18.83	19.145	0					20	6	4	0	0	0	0.001214	1	5800	5800		131.12	76.393	1	2517700			39497	4938	26740	26839	39991	39991					-0.07193735776672838
STMPHTSGMNR	11	Unmodified	_STMPHTSGMNR_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.7716674804688	2	609.771339	1217.52813	2.9282	0.0017855	-3.1095	-0.0018961	-0.18136	-0.00011059	609.7697958648448	19.025	0.2655	19.025	18.863	19.129	0					19	5	5	0	0	0	0.098165	1	5816	5816		90.149	30.031	1	1512000			39498	4938	26740	26839	39992	39992					-0.07193735776672838
STMPHTSGMNR	11	Oxidation (M)	_STMPHTSGM(Oxidation (M))NR_		STMPHTSGM(1)NR		STM(-46)PHTSGM(46)NR	0	0	1		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	617.76904296875	2	617.768797	1233.52304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.447	1	15.447	14.947	15.947	0								0	0	0	0.32536	1	3523	3523		48.602	9.8479	2				39499	4938	26740	26840	39993	39993		201			-0.08438039639304407
STMRPLATAYK	11	Unmodified	_STMRPLATAYK_					0	0	0		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	619.8316040039062	2	619.831723	1237.64889	2.0268	0.0012562	-2.2245	-0.0013788	-0.19778	-0.00012259	619.8301557232486	25.235	0.11856	25.235	25.155	25.273	0					4	2	2	0	0	0	0.55968	1	8937	8937		39.873	15.354	1	52714			39500	5521	26741	26841	39994	39994					0.03957415208424209
STMRSTPSMRT	11	Unmodified	_STMRSTPSMRT_					0	0	0		PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant	PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant	PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	418.8683776855469	3	418.869157	1253.58564	-1.3406	-0.00056153	-0.58311	-0.00024424	-1.9237	-0.00080577	418.8689706439988	14.797	0.053678	14.797	14.778	14.832	0					4	2	2	0	0	0	0.54316	1	3267	3267		41.08	7.1584	1	130110			39501	11927	26742	26842	39995	39995					-0.031008935711042795
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(59)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.7501220703125	2	571.750072	1141.48559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.781	1	18.781	18.281	19.281	0								0	0	0	0.24601	1	4732	4732		58.63	14.252	1				39502	10764	26743	26843	39996	39996	437				-0.0794913090492173
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(130)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.7503662109375	2	571.750072	1141.48559	1.7435	0.00099685	-1.5174	-0.00086757	0.22612	0.00012928	571.7494074458131	19.086	0.13413	19.086	19.004	19.138	0					11	3	4	0	0	0	0.004134	1	5705	5705		128.35	75.411	1	569290			39503	10764	26743	26843	39997	39997	437				-0.0794913090492173
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(83)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.7501831054688	2	571.750072	1141.48559	0.084864	4.8521E-05	0.2904	0.00016604	0.37526	0.00021456	571.7503401319907	18.766	0.095095	18.766	18.707	18.802	0					9	3	3	0	0	0	0.12878	1	4957	4957		82.831	36.858	1	217890			39504	10764	26743	26843	39998	39998	437				-0.0794913090492173
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(180)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.750244140625	2	571.750072	1141.48559	2.0147	0.0011519	-2.4415	-0.0013959	-0.42674	-0.00024399	571.7491133265625	18.976	0.16565	18.976	18.917	19.083	0					9	3	4	0	0	0	8.1205E-06	1	5933	5933		180.09	92.394	1	1004100			39505	10764	26743	26843	39999	39999	437				-0.0794913090492173
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(100)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.75048828125	2	571.750072	1141.48559	0.62001	0.00035449	0.058286	3.3325E-05	0.6783	0.00038782	571.7500721007139	18.863	0.095377	18.863	18.803	18.899	0					4	2	2	0	0	0	0.056425	1	5011	5011		102.06	43.832	1	85354			39506	10764	26743	26843	40000	40000	437				-0.0794913090492173
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(76)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.7505493164062	2	571.750072	1141.48559	-1.4046	-0.00080308	2.0651	0.0011807	0.66047	0.00037762	571.7511312219968	18.84	0.092367	18.84	18.792	18.884	0					4	2	2	0	0	0	0.18862	1	5007	5007		75.652	31.275	1	75648			39507	10764	26743	26843	40001	40001	437				-0.0794913090492173
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(170)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7504272460938	2	571.750072	1141.48559	1.6398	0.00093754	-1.2134	-0.00069373	0.42642	0.0002438	571.7494593811512	18.988	0.16711	18.988	18.88	19.047	0					8	3	3	0	0	0	3.3692E-05	1	5798	5798		167.93	91.764	1	1525300			39508	10764	26743	26843	40002	40002	437				-0.0794913090492173
STMSACASTAR	11	Carbamidomethyl (C)	_STMSAC(Carbamidomethyl (C))ASTAR_	STMSAC(1)ASTAR		STMSAC(160)ASTAR		0	1	0		ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	ENST00000566749.5_1_16:30094754-30094823:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.7504272460938	2	571.750072	1141.48559	3.3941	0.0019406	-3.0849	-0.0017638	0.30915	0.00017676	571.7485086755755	18.971	0.11699	18.971	18.914	19.031	0					6	2	3	0	0	0	6.0253E-05	1	5792	5792		156.16	79.387	1	688410			39509	10764	26743	26843	40003	40003	437				-0.0794913090492173
STMSAEWVSK	10	Unmodified	_STMSAEWVSK_					0	0	0		DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.2664184570312	2	563.265881	1124.51721	1.7824	0.001004	-1.6031	-0.00090295	0.17937	0.00010103	563.2652257403322	31.416	0.25275	31.416	31.331	31.584	0					13	6	3	0	0	0	0.080628	1	11448	11448		99.013	26.77	1	250910			39510	784	26744	26844	40004	40004					-0.04006814879312515
STMSAEWVSK	10	Unmodified	_STMSAEWVSK_					0	0	0		DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.2670288085938	2	563.265881	1124.51721	1.0202	0.00057465	-0.040925	-2.3052E-05	0.97928	0.0005516	563.2662380042149	31.429	0.16879	31.429	31.319	31.488	0					6	3	2	0	0	0	0.022799	1	11736	11736		123.21	57.743	1	97258			39511	784	26744	26844	40005	40005					-0.04006814879312515
STMSIRVTQK	10	Unmodified	_STMSIRVTQK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.8159790039062	2	575.816073	1149.61759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.336	1	22.336	21.836	22.836	0								0	0	0	0.33707	1	6299	6299		45.022	0.64502	1			+	39512	11643	26745	26845	40006	40006					0.04876842174348894
STMSIRVTQK	10	Unmodified	_STMSIRVTQK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.8168334960938	2	575.816073	1149.61759	-0.093569	-5.3878E-05	0.96189	0.00055387	0.86832	0.00049999	575.8165767347938	22.641	0.25684	22.641	22.548	22.805	0					8	6	2	0	0	0	0.10583	1	7395	7395		94.409	9.0496	1	440190		+	39513	11643	26745	26845	40007	40007					0.04876842174348894
STMSIRVTQK	10	Unmodified	_STMSIRVTQK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.8163452148438	2	575.816073	1149.61759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.366	1	22.366	21.866	22.866	0								0	0	0	0.37293	1	6571	6571		38.754	3.1353	1			+	39514	11643	26745	26845	40008	40008					0.04876842174348894
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2638549804688	2	532.263673	1062.51279	1.0201	0.00054298	-0.70771	-0.00037669	0.31243	0.0001663	532.2633450587462	25.267	0.18585	25.267	25.186	25.372	0					9	5	2	0	0	0	0.041742	1	7578	7578		112.11	40.23	1	268100			39515	8760	26746	26846	40009	40009					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7654418945312	2	532.263673	1062.51279	0.12772	6.7983E-05	0.19806	0.00010542	0.32579	0.0001734	532.7653315516854	25.533	0.29974	25.533	25.404	25.704	0					21	7	4	0	0	0	0.50287	1	8724	8724		45.022	0.64502	1	2388800			39516	8760	26746	26846	40010	40010					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.26416015625	2	532.263673	1062.51279	-0.30274	-0.00016114	0.93495	0.00049764	0.63221	0.0003365	532.2643854491854	25.287	0.29037	25.287	25.189	25.479	0					31	10	4	0	0	0	0.13663	1	7837	7837		89.029	11.711	1	2483200			39517	8760	26746	26846	40011	40011					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2643432617188	2	532.263673	1062.51279	1.7166	0.00091369	-1.3995	-0.00074489	0.31712	0.00016879	532.2630970570598	25.542	0.31147	25.542	25.392	25.704	0					21	6	5	0	0	0	0.0087281	1	9065	9065		148.69	36.583	1	15781000			39518	8760	26746	26846	40012	40012					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2640380859375	2	532.263673	1062.51279	1.1537	0.00061408	-0.53497	-0.00028474	0.61874	0.00032933	532.26358765887	25.389	0.29607	25.389	25.252	25.548	0					22	7	5	0	0	0	0.011557	1	8055	8055		136.99	24.882	1	1811800			39519	8760	26746	26846	40013	40013					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2638549804688	2	532.263673	1062.51279	-1.2708	-0.00067643	1.6946	0.00090199	0.42379	0.00022557	532.2645840513129	25.382	0.29995	25.382	25.239	25.539	0					19	7	4	0	0	0	0.003796	1	8066	8066		169.65	46.444	1	2310100			39520	8760	26746	26846	40014	40014					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.263916015625	2	532.263673	1062.51279	1.7404	0.00092637	-1.5633	-0.00083207	0.17717	9.43E-05	532.2631101537901	25.458	0.50156	25.458	25.347	25.849	0					31	8	5	0	0	0	0.0087281	1	8924	8924		148.69	25.482	1	13648000			39521	8760	26746	26846	40015	40015					-0.015962793022254118
STMSTSCAR	9	Unmodified	_STMSTSCAR_					0	0	0		ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2022399902344	2	472.202227	942.389901	-0.021563	-1.0182E-05	-0.75825	-0.00035805	-0.77981	-0.00036823	472.20197058726393	17.621	0.077883	17.621	17.558	17.636	0					4	2	2	0	0	0	0.35021	1	4236	4236		45.972	8.8131	1	76215			39522	8417	26747	26847	40016	40016					-0.08359859025154037
STMSTSCAR	9	Unmodified	_STMSTSCAR_					0	0	0		ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.20208740234375	2	472.202227	942.389901	0.20686	9.7679E-05	-0.49832	-0.00023531	-0.29146	-0.00013763	472.2019897080686	17.902	0.19261	17.902	17.816	18.009	0					7	4	2	0	0	0	0.24334	1	5148	5148		56.434	5.0983	1	772310			39523	8417	26747	26847	40017	40017					-0.08359859025154037
STMSTSCAR	9	Unmodified	_STMSTSCAR_					0	0	0		ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2017822265625	2	472.202227	942.389901	-0.1232	-5.8177E-05	-1.0088	-0.00047637	-1.132	-0.00053454	472.20185756896694	17.862	0.27006	17.862	17.751	18.022	0					10	5	3	0	0	0	0.020674	1	5391	5391		120.87	48.991	1	987880			39524	8417	26747	26847	40018	40018					-0.08359859025154037
STMSTSCAR	9	Unmodified	_STMSTSCAR_					0	0	0		ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2021484375	2	472.202227	942.389901	-0.17074	-8.0622E-05	-1.0815	-0.0005107	-1.2523	-0.00059132	472.20206656921215	17.664	0.1147	17.664	17.609	17.723	0					4	2	2	0	0	0	0.098791	1	4465	4465		79.713	19.594	1	74569			39525	8417	26747	26847	40019	40019					-0.08359859025154037
STMSTSCAR	9	Unmodified	_STMSTSCAR_					0	0	0		ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	ENST00000282388.3_2_2:43452860-43453537:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.201904296875	2	472.202227	942.389901	-0.56607	-0.0002673	-0.87389	-0.00041265	-1.44	-0.00067995	472.20213190545644	17.843	0.4075	17.843	17.734	18.142	0					16	8	4	0	0	0	0.021961	1	5236	5236		118.74	39.03	1	759140			39526	8417	26747	26847	40020	40020					-0.08359859025154037
STMSVANKETS	11	Unmodified	_STMSVANKETS_					0	0	0			REV__ENSG00000185499|ENST00000620103|MUC1	REV__ENSG00000185499|ENST00000620103|MUC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.5159912109375	3	385.516777	1153.5285	-1.1754	-0.00045315	-1.2288	-0.00047372	-2.4042	-0.00092687	385.5163668274419	26.903	0.17628	26.903	26.819	26.995	0					16	6	3	0	0	0	0.72624	1	8506	8506		25.126	2.5463	1	190070	+		39527	17029	26748	26848	40021	40021					-0.04212037575825889
STMTSGQAR	9	Unmodified	_STMTSGQAR_					0	0	0		nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7212219238281	2	469.721641	937.428729	0.20947	9.8395E-05	-0.92923	-0.00043648	-0.71976	-0.00033808	469.72112030711634	14.905	0.21626	14.905	14.82	15.037	0					9	5	2	0	0	0	0.0097668	1	3745	3745		141.52	75.091	1	835780			39528	2449	26749	26849	40022	40022					-0.04248810399121794
STMTSGQAR	9	Unmodified	_STMTSGQAR_					0	0	0		nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7213439941406	2	469.721641	937.428729	-0.12597	-5.9171E-05	-0.13176	-6.189E-05	-0.25773	-0.00012106	469.7216297176889	14.854	0.16276	14.854	14.797	14.96	0					5	3	2	0	0	0	0.023928	1	3954	3954		115.49	65.47	1	205780			39529	2449	26749	26849	40023	40023					-0.04248810399121794
STMTSGQAR	9	Unmodified	_STMTSGQAR_					0	0	0		nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7212219238281	2	469.721641	937.428729	0.6172	0.00028991	-1.4644	-0.00068786	-0.8472	-0.00039795	469.7209597237115	14.885	0.21377	14.885	14.78	14.994	0					7	4	2	0	0	0	0.095583	1	3973	3973		80.455	32.797	1	1018200			39530	2449	26749	26849	40024	40024					-0.04248810399121794
STMTSGQAR	9	Unmodified	_STMTSGQAR_					0	0	0		nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.72174072265625	2	469.721641	937.428729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.688	1	14.688	14.188	15.188	0								0	0	0	0.33029	1	3158	3158		29.17	0.020503	1				39531	2449	26749	26849	40025	40025					-0.04248810399121794
STMTSGQAR	9	Unmodified	_STMTSGQAR_					0	0	0		nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7220764160156	2	469.721641	937.428729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.679	1	14.679	14.179	15.179	0								0	0	0	0.16453	1	3154	3154		56.434	22.261	1				39532	2449	26749	26849	40026	40026					-0.04248810399121794
STMTSGQAR	9	Unmodified	_STMTSGQAR_					0	0	0		nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	nc|ENSG00000106609|Q9NWD8-2|TMEM248	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.72100830078125	2	469.721641	937.428729	-0.52955	-0.00024874	-0.39091	-0.00018362	-0.92046	-0.00043236	469.72159552045724	14.868	0.31742	14.868	14.761	15.079	0					11	6	3	0	0	0	0.04067	1	3786	3786		98.582	50.925	1	391670			39533	2449	26749	26849	40027	40027					-0.04248810399121794
STMVDVRVMK	10	Unmodified	_STMVDVRVMK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.20703125	3	389.20711	1164.5995	0.86841	0.00033799	-1.5666	-0.00060971	-0.69814	-0.00027172	389.20673051733985	29.618	0.25756	29.618	29.527	29.784	0					15	6	3	0	0	0	0.56063	1	10609	10609		38.754	2.436	1	334690			39534	1722	26750	26850	40028	40028					0.023783839279758467
STMVDVRVMK	10	Unmodified	_STMVDVRVMK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.3070678710938	2	583.307026	1164.5995	0.0029325	1.7105E-06	-0.17452	-0.0001018	-0.17159	-0.00010009	583.306832599124	29.652	0.21557	29.652	29.557	29.773	0					11	5	3	0	0	0	0.28724	1	10619	10619		65.157	5.039	1	289640			39535	1722	26750	26850	40029	40029					0.023783839279758467
STMVDVRVMK	10	Unmodified	_STMVDVRVMK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.2070617675781	3	389.20711	1164.5995	0.15408	5.9968E-05	-0.31939	-0.00012431	-0.16532	-6.4342E-05	389.20696343752286	29.625	0.16091	29.625	29.522	29.683	0					5	3	2	0	0	0	0.536	1	11004	11004		41.427	12.85	1	140420			39536	1722	26750	26850	40030	40030					0.023783839279758467
STMVDVRVMK	10	Unmodified	_STMVDVRVMK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.2069396972656	3	389.20711	1164.5995	-0.69868	-0.00027193	0.48379	0.0001883	-0.21489	-8.3638E-05	389.20757294753855	29.608	0.266	29.608	29.498	29.764	0					14	5	4	0	0	0	0.19191	1	10853	10853		80.455	22.225	1	679370			39537	1722	26750	26850	40031	40031					0.023783839279758467
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.90496826171875	3	431.905431	1292.69446	0.1741	7.5195E-05	-1.1144	-0.00048132	-0.94031	-0.00040612	431.9051718955238	24.382	0.35524	24.382	24.309	24.664	0					20	10	4	0	0	0	0.33911	1	7179	7179		58.246	25.496	1	353870			39538	1722	26751	26851	40032	40032					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	647.8563842773438	2	647.354508	1292.69446	0.22459	0.00014539	-0.058196	-3.7674E-05	0.1664	0.00010772	647.3543754770042	24.409	0.13478	24.409	24.3	24.435	0					7	4	2	0	0	0	0.63797	1	7187	7187		37.508	8.3586	1	40931			39539	1722	26751	26851	40033	40033					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.9052734375	3	431.905431	1292.69446	0.75056	0.00032417	-1.7823	-0.00076978	-1.0317	-0.00044561	431.9048982003584	24.661	0.37926	24.661	24.573	24.952	0					28	9	5	0	0	0	0.15663	1	8320	8320		79.489	31.53	1	5910600			39540	1722	26751	26851	40034	40034					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	647.3543090820312	2	647.354508	1292.69446	0.36623	0.00023708	-0.83063	-0.00053771	-0.4644	-0.00030063	647.3541824007821	24.652	0.22429	24.652	24.562	24.786	0					14	5	4	0	0	0	5.7058E-05	1	8332	8332		142.36	60.121	1	924790			39541	1722	26751	26851	40035	40035					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	647.3548583984375	2	647.354508	1292.69446	1.1697	0.0007572	-0.064303	-4.1627E-05	1.1054	0.00071558	647.3542214778709	24.403	0.071074	24.403	24.364	24.435	0					6	2	3	0	0	0	0.27262	1	7470	7470		56.632	17.379	1	101470			39542	1722	26751	26851	40036	40036					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.9053649902344	3	431.905431	1292.69446	-0.4807	-0.00020762	-0.64089	-0.0002768	-1.1216	-0.00048442	431.9053535888856	24.619	0.36214	24.619	24.511	24.873	0					23	7	4	0	0	0	0.089609	1	8626	8626		92.239	54.639	1	4441100			39543	1722	26751	26851	40037	40037					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	647.3558349609375	2	647.354508	1292.69446	-0.64626	-0.00041836	1.7436	0.0011287	1.0973	0.00071035	647.3557958919574	24.636	0.26623	24.636	24.528	24.794	0					11	5	3	0	0	0	0.086726	1	8656	8656		75.652	1.4872	1	667060			39544	1722	26751	26851	40038	40038					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.90545654296875	3	431.905431	1292.69446	0.20269	8.7541E-05	-0.90208	-0.00038961	-0.6994	-0.00030207	431.9051781936808	24.456	0.27076	24.456	24.355	24.626	0					14	6	4	0	0	0	0.29287	1	7632	7632		63.426	35.345	1	382390			39545	1722	26751	26851	40039	40039					0.05982317399138992
STMVDVRVMKK	11	Unmodified	_STMVDVRVMKK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.9053649902344	3	431.905431	1292.69446	-0.47706	-0.00020605	-0.42705	-0.00018445	-0.90411	-0.00039049	431.9054848038479	24.587	0.44954	24.587	24.48	24.929	0					34	9	6	0	0	0	0.17294	1	8490	8490		77.533	31.076	1	10045000			39546	1722	26751	26851	40040	40040					0.05982317399138992
STNAYMPLLK	10	Unmodified	_STNAYMPLLK_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3020629882812	2	569.302267	1136.58998	1.969	0.001121	-1.2713	-0.00072378	0.6977	0.0003972	569.3015035207703	40.223	0.1324	40.223	40.168	40.301	0					7	5	2	0	0	0	0.20981	1	15853	15853		78.264	28.728	1	63578			39547	1312	26752	26852	40041	40041					0.027149389141186475
STNHTQALLK	10	Unmodified	_STNHTQALLK_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;NYNRIN|p.L483*|1|0.05|ENSG00000205978|chr14:24409238-24409238|C/-|frameshift_variant;NYNRIN|p.Q626Rfs*7|1|0.37|ENSG00000205978|chr14:24409667-24409667|C/-|frameshift_variant;NYNRIN|p.A1060Qfs*55|1|0.28|ENSG00000205978|chr14:24414924-24414924|G/-|frameshift_variant;NYNRIN|p.G1206Vfs*50|1|0.1|ENSG00000205978|chr14:24415362-24415362|G/-|frameshift_variant;NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.8071899414062	2	556.806562	1111.59857	0.11657	6.4909E-05	1.4249	0.0007934	1.5415	0.00085831	556.8071650888453	19.363	0.077801	19.363	19.312	19.39	0					4	2	2	0	0	0	0.38179	1	5236	5236		58.246	18.993	1	57882			39548	7761	26753	26853	40042	40042					0.04723628874944552
STNHTQALLK	10	Unmodified	_STNHTQALLK_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;NYNRIN|p.L483*|1|0.05|ENSG00000205978|chr14:24409238-24409238|C/-|frameshift_variant;NYNRIN|p.Q626Rfs*7|1|0.37|ENSG00000205978|chr14:24409667-24409667|C/-|frameshift_variant;NYNRIN|p.A1060Qfs*55|1|0.28|ENSG00000205978|chr14:24414924-24414924|G/-|frameshift_variant;NYNRIN|p.G1206Vfs*50|1|0.1|ENSG00000205978|chr14:24415362-24415362|G/-|frameshift_variant;NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.8067016601562	2	556.806562	1111.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.61	1	19.61	19.11	20.11	0								0	0	0	0.2063	1	6093	6093		63.426	10.49	1				39549	7761	26753	26853	40043	40043					0.04723628874944552
STNKCLSPLS	10	Unmodified	_STNKCLSPLS_					0	0	0			REV__ENST00000607810.5_2_6:19803822-19804023:-|nuORF	REV__ENST00000607810.5_2_6:19803822-19804023:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2667846679688	2	525.268424	1048.5223	-1.2446	-0.00065377	-1.4715	-0.00077294	-2.7161	-0.0014267	525.7690743625839	24.869	0.2412	24.869	24.758	24.999	0					9	5	2	0	0	0	0.52275	1	7801	7801		42.864	2.0861	1	248630	+		39550	20628	26754	26854	40044	40044					-2.5110166916419985E-05
STNKISTAK	9	Unmodified	_STNKISTAK_					0	0	0		ENST00000463336.1_1_9:6241694-6242202:+|nuORF;nc|ENSG00000137033|O95760-4|IL33;nc|ENSG00000137033|O95760-3|IL33;nc|ENSG00000137033|O95760-2|IL33;ENSG00000137033|ENST00000682010|IL33	ENST00000463336.1_1_9:6241694-6242202:+|nuORF	ENST00000463336.1_1_9:6241694-6242202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2689514160156	2	475.269281	948.52401	0.31749	0.00015089	-1.069	-0.00050805	-0.75148	-0.00035716	475.2688318168986	13.459	0.12173	13.459	13.378	13.5	0					6	3	2	0	0	0	0.046074	1	3063	3063		96.665	32.458	1	403280			39551	4138	26755	26855	40045	40045					0.04768866063557198
STNKISTAK	9	Unmodified	_STNKISTAK_					0	0	0		ENST00000463336.1_1_9:6241694-6242202:+|nuORF;nc|ENSG00000137033|O95760-4|IL33;nc|ENSG00000137033|O95760-3|IL33;nc|ENSG00000137033|O95760-2|IL33;ENSG00000137033|ENST00000682010|IL33	ENST00000463336.1_1_9:6241694-6242202:+|nuORF	ENST00000463336.1_1_9:6241694-6242202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2693176269531	2	475.269281	948.52401	-0.11988	-5.6977E-05	0.71604	0.00034031	0.59616	0.00028333	475.26955146726925	13.441	0.10321	13.441	13.389	13.493	0					6	2	3	0	0	0	0.14673	1	3283	3283		68.626	22.654	1	158280			39552	4138	26755	26855	40046	40046					0.04768866063557198
STNKISTAK	9	Unmodified	_STNKISTAK_					0	0	0		ENST00000463336.1_1_9:6241694-6242202:+|nuORF;nc|ENSG00000137033|O95760-4|IL33;nc|ENSG00000137033|O95760-3|IL33;nc|ENSG00000137033|O95760-2|IL33;ENSG00000137033|ENST00000682010|IL33	ENST00000463336.1_1_9:6241694-6242202:+|nuORF	ENST00000463336.1_1_9:6241694-6242202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.26959228515625	2	475.269281	948.52401	-0.60902	-0.00028945	1.4444	0.00068648	0.83537	0.00039703	475.2699169839057	13.401	0.10451	13.401	13.349	13.453	0					4	2	2	0	0	0	0.022698	1	3110	3110		117.53	55.418	1	280280			39553	4138	26755	26855	40047	40047					0.04768866063557198
STNLIIHQK	9	Unmodified	_STNLIIHQK_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.3063354492188	2	527.306198	1052.59784	0.57503	0.00030322	0.21488	0.00011331	0.7899	0.00041652	527.3063934962721	21.501	0.11308	21.501	21.431	21.544	0					11	5	3	0	0	0	0.21263	1	5919	5919		60.118	1.8883	1	153980			39554	7330	26756	26856	40048	40048					0.07364834225904815
STNLIIHQK	9	Unmodified	_STNLIIHQK_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.3065795898438	2	527.306198	1052.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.834	1	21.834	21.334	22.334	0								0	0	0	0.0047356	1	6999	6999		115.49	11.437	1				39555	7330	26756	26856	40049	40049					0.07364834225904815
STNLIIHQK	9	Unmodified	_STNLIIHQK_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.30712890625	2	527.306198	1052.59784	0.51818	0.00027324	0.46702	0.00024626	0.98521	0.00051951	527.3065615946762	21.53	0.096779	21.53	21.475	21.571	0					6	3	2	0	0	0	0.063823	1	6193	6193		90.37	18.492	1	110660			39556	7330	26756	26856	40050	40050					0.07364834225904815
STNLIIHQK	9	Unmodified	_STNLIIHQK_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.3064575195312	2	527.306198	1052.59784	0.28441	0.00014997	0.19819	0.00010451	0.4826	0.00025448	527.3062886761003	21.817	0.36301	21.817	21.642	22.005	0					12	7	2	0	0	0	0.0061615	1	7246	7246		153.04	13.065	1	660020			39557	7330	26756	26856	40051	40051					0.07364834225904815
STNLKESVV	9	Unmodified	_STNLKESVV_					0	0	0			REV__tr|U7T2W4|U7T2W4_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00483PE=3SV=1	REV__tr|U7T2W4|U7T2W4_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00483PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7693786621094	2	488.769114	975.523675	-1.2501	-0.00061103	0.5707	0.00027894	-0.67944	-0.00033209	488.7699598568366	15.4	0.055617	15.4	15.348	15.403	0					4	2	2	0	0	0	0.39215	1	3499	3499		42.396	7.1954	1	41361	+		39558	22120	26757	26857	40052	40052					0.034934463437252816
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7535400390625	2	487.75433	973.494107	-0.35841	-0.00017482	-1.3026	-0.00063533	-1.661	-0.00081015	487.7536001523525	17.694	0.32762	17.694	17.488	17.816	0					12	8	3	0	0	0	0.023928	1	5042	5042		115.49	27.74	1	605900			39559	6361	26758	26858	40053	40053					0.006299271182228949
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7546691894531	2	487.75433	973.494107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.402	1	17.402	16.902	17.902	0								0	0	0	0.0059645	1	4354	4354		176.44	64.034	1				39560	6361	26758	26858	40054	40054					0.006299271182228949
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.75445556640625	2	487.75433	973.494107	0.62719	0.00030592	-0.54134	-0.00026404	0.085854	4.1876E-05	487.75408050695796	17.642	0.26986	17.642	17.583	17.853	0					7	5	2	0	0	0	0.0016668	1	5286	5286		176.44	77.07	1	2007400			39561	6361	26758	26858	40055	40055					0.006299271182228949
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.75396728515625	2	487.75433	973.494107	-0.22028	-0.00010744	0.6401	0.00031221	0.41982	0.00020477	487.7546349431905	17.472	0.13246	17.472	17.411	17.544	0					7	4	2	0	0	0	0.017421	1	4357	4357		126.24	55.426	1	198200			39562	6361	26758	26858	40056	40056					0.006299271182228949
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	GNG12|p.F63Efs*8|1|0.1|ENSG00000172380|chr1:67705483-67705484|-/GAGATTTACCTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7539367675781	2	487.75433	973.494107	0.80262	0.00039148	-1.5256	-0.00074411	-0.72296	-0.00035263	487.7535798286506	17.622	0.37047	17.622	17.464	17.834	0					12	7	4	0	0	0	0.003936	1	5129	5129		163.15	64.569	1	1259900			39563	6361	26758	26858	40057	40057					0.006299271182228949
STNNIIDKFP	10	Unmodified	_STNNIIDKFP_					0	0	0			REV__ENST00000562715.1_1_16:14670117-14678644:-|nuORF	REV__ENST00000562715.1_1_16:14670117-14678644:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.53497314453125	3	383.536389	1147.58734	-2.1616	-0.00082906	-1.6127	-0.00061854	-3.7744	-0.0014476	383.5358366186047	16.12	0.18057	16.12	16.014	16.195	0					9	5	2	0	0	0	0.61238	1	3775	3775		32.751	6.6872	1	54680	+		39564	15090	26759	26859	40058	40058					0.019448067808070846
STNNMAYNK	9	Unmodified	_STNNMAYNK_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.73486328125	2	521.734748	1041.45494	0.78838	0.00041133	-0.724	-0.00037774	0.064381	3.359E-05	521.7344234661575	17.625	0.14424	17.625	17.548	17.693	0					6	4	2	0	0	0	0.11898	1	4245	4245		75.043	32.569	1	80440			39565	5529	26760	26860	40059	40059					-0.0641254122765531
STNNMAYNK	9	Unmodified	_STNNMAYNK_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7347412109375	2	521.734748	1041.45494	0.079321	4.1384E-05	0.13395	6.9886E-05	0.21327	0.00011127	521.7348607766847	17.93	0.2842	17.93	17.844	18.128	0					12	6	4	0	0	0	0.0097668	1	5143	5143		141.52	74.027	1	468530			39566	5529	26760	26860	40060	40060					-0.0641254122765531
STNNMAYNK	9	Unmodified	_STNNMAYNK_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7350463867188	2	521.734748	1041.45494	0.36157	0.00018864	0.52859	0.00027578	0.89015	0.00046442	521.7350458727174	17.631	0.13708	17.631	17.564	17.701	0					8	4	2	0	0	0	0.015496	1	4446	4446		129.42	49.482	1	281950			39567	5529	26760	26860	40061	40061					-0.0641254122765531
STNNMAYNK	9	Unmodified	_STNNMAYNK_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.735107421875	2	521.734748	1041.45494	1.761	0.00091877	-1.6107	-0.00084037	0.15027	7.8399E-05	521.7341750007109	17.896	0.21935	17.896	17.785	18.005	0					12	4	4	0	0	0	3.4569E-05	1	5382	5382		199.7	125.45	1	1806800			39568	5529	26760	26860	40062	40062					-0.0641254122765531
STNNMAYNK	9	Unmodified	_STNNMAYNK_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7352905273438	2	521.734748	1041.45494	1.0535	0.00054964	-0.15685	-8.1834E-05	0.89664	0.00046781	521.734732820582	17.698	0.15484	17.698	17.64	17.794	0					5	3	2	0	0	0	0.032052	1	4478	4478		107.01	46.714	1	194310			39569	5529	26760	26860	40063	40063					-0.0641254122765531
STNNMAYNK	9	Unmodified	_STNNMAYNK_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.7360229492188	2	521.734748	1041.45494	-1.3186	-0.00068794	2.69	0.0014035	1.3715	0.00071555	521.7362743494128	17.718	0.15727	17.718	17.624	17.781	0					8	3	3	0	0	0	0.020674	1	4471	4471		120.87	49.491	1	138330			39570	5529	26760	26860	40064	40064					-0.0641254122765531
STNNMAYNK	9	Unmodified	_STNNMAYNK_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.734619140625	2	521.734748	1041.45494	1.6243	0.00084746	-1.9836	-0.0010349	-0.35926	-0.00018744	521.7338296106815	17.875	0.25955	17.875	17.767	18.027	0					13	5	3	0	0	0	0.0023831	1	5251	5251		172.25	105.82	1	1493100			39571	5529	26760	26860	40065	40065					-0.0641254122765531
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.8013305664062	2	537.800749	1073.58694	-0.29963	-0.00016114	1.4446	0.0007769	1.145	0.00061576	537.8015327539707	39.66	0.27512	39.66	39.578	39.853	0					40	15	4	0	0	0	0.037924	1	13323	13323		101.25	31.625	1	493050			39572	1361	26761	26861	40066	40066					0.0530943185160595
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8017578125	2	537.800749	1073.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.869	1	39.869	39.369	40.369	0								0	0	0	0.012693	1	15696	15696		106.68	37.055	1				39573	1361	26761	26861	40067	40067					0.0530943185160595
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.8011474609375	2	537.800749	1073.58694	1.0198	0.00054843	-0.039809	-2.1409E-05	0.97996	0.00052702	537.8007461387205	39.669	0.24182	39.669	39.546	39.788	0					30	12	3	0	0	0	0.19605	1	14107	14107		62.107	17.991	1	374870			39574	1361	26761	26861	40068	40068					0.0530943185160595
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.801025390625	2	537.800749	1073.58694	-1.4407	-0.00077482	1.7557	0.0009442	0.31495	0.00016938	537.8018416991861	39.65	0.38886	39.65	39.412	39.801	0					35	20	3	0	0	0	0.063171	1	14137	14137		90.601	23.107	1	303760			39575	1361	26761	26861	40069	40069					0.0530943185160595
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8011474609375	2	537.800749	1073.58694	2.0002	0.0010757	-1.4903	-0.00080147	0.50996	0.00027426	537.7999730244442	39.828	0.89418	39.828	39.513	40.407	0					49	20	5	0	0	0	0.012936	1	15760	15760		134.77	57.991	1	3520700			39576	1361	26761	26861	40070	40070					0.0530943185160595
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.8017578125	2	537.800749	1073.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.829	1	39.829	39.329	40.329	0								0	0	0	0.029433	1	15769	15769		96.034	30.568	1				39577	1361	26761	26861	40071	40071					0.0530943185160595
STNPFRPQK	9	Unmodified	_STNPFRPQK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;nc|ENSG00000133136|A0A804HLA8|GNG5B	ENSG00000174021|ENST00000370645|GNG5;nc|ENSG00000133136|A0A804HLA8|GNG5B	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7882690429688	2	537.788173	1073.56179	0.78659	0.00042302	-0.35813	-0.0001926	0.42847	0.00023042	537.7880068169738	20.101	0.70528	20.101	19.727	20.433	0					60	22	5	0	0	0	0.087861	2	5355	5206;5355		82.241	25.519	1	1119900			39578	6467;11529	26762	26862	40072;40073	40073					0.027953770490285024
STNPFRPQK	9	Unmodified	_STNPFRPQK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;nc|ENSG00000133136|A0A804HLA8|GNG5B	ENSG00000174021|ENST00000370645|GNG5;nc|ENSG00000133136|A0A804HLA8|GNG5B	ENSG00000174021|ENST00000370645|GNG5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7877197265625	2	537.788173	1073.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.683	1	20.683	20.183	21.183	0								0	0	0	0.34845	1	5579	5579		25.574	1.3713	1				39579	6467;11529	26762	26862	40074	40074					0.027953770490285024
STNPFRPQK	9	Unmodified	_STNPFRPQK_					0	0	0		ENSG00000174021|ENST00000370645|GNG5;nc|ENSG00000133136|A0A804HLA8|GNG5B	ENSG00000174021|ENST00000370645|GNG5;nc|ENSG00000133136|A0A804HLA8|GNG5B	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.78857421875	2	537.788173	1073.56179	0.2245	0.00012073	0.20189	0.00010858	0.42639	0.00022931	537.7883855888762	20.43	1.1702	20.43	20.005	21.175	0					73	26	4	0	0	0	0.01768	2	6405	6233;6405		125.81	38.06	1	6931400			39580	6467;11529	26762	26862	40075;40076	40076					0.027953770490285024
STNPKAALK	9	Unmodified	_STNPKAALK_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;RPRD2|p.P1275Lfs*138|1|0.15|ENSG00000163125|chr1:150472768-150472768|C/-|frameshift_variant;RPRD2|p.K249Sfs*6|1|0.36|ENSG00000163125|chr1:150446274-150446274|C/-|frameshift_variant;RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant;RPRD2|p.P772Lfs*42|2|0.19|ENSG00000163125|chr1:150471259-150471259|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2741394042969	2	465.274367	928.53418	-0.13791	-6.4165E-05	-0.50037	-0.00023281	-0.63828	-0.00029697	465.2741455629198	16.339	0.369	16.339	16.128	16.497	0					17	7	3	0	0	0	0.078509	1	4612	4612		85.161	13.865	1	1893900			39581	5530	26763	26863	40077	40077					0.06705473788781546
STNPKAALK	9	Unmodified	_STNPKAALK_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;RPRD2|p.P1275Lfs*138|1|0.15|ENSG00000163125|chr1:150472768-150472768|C/-|frameshift_variant;RPRD2|p.K249Sfs*6|1|0.36|ENSG00000163125|chr1:150446274-150446274|C/-|frameshift_variant;RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant;RPRD2|p.P772Lfs*42|2|0.19|ENSG00000163125|chr1:150471259-150471259|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.27447509765625	2	465.274367	928.53418	-0.49132	-0.0002286	0.11361	5.2859E-05	-0.37771	-0.00017574	465.27447054399545	16.308	0.3709	16.308	16.047	16.418	0					16	7	3	0	0	0	0.12239	1	4452	4452		74.255	7.8258	1	856190			39582	5530	26763	26863	40078	40078					0.06705473788781546
STNRKPLTK	9	Unmodified	_STNRKPLTK_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L;SECISBP2L|p.D531N|1|0.1|ENSG00000138593|chr15:49012788-49012788|C/T|missense_variant;ENST00000559198.1_1_15:49303877-49305024:-|nuORF	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8116455078125	2	522.811648	1043.60874	1.6646	0.00087028	-0.65922	-0.00034465	1.0054	0.00052563	522.8116587888018	12.966	0.12221	12.966	12.895	13.017	0					7	3	3	0	0	0	0.24334	1	2841	2841		56.434	1.6575	1	99244			39583	4267	26764	26864	40079	40079					0.08868236600164892
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2532653808594	2	491.253631	980.49271	-0.063661	-3.1274E-05	-0.81408	-0.00039992	-0.87774	-0.00043119	491.2533246171175	25.587	0.25281	25.587	25.492	25.744	0					20	8	3	0	0	0	0.037712	1	7689	7689		101.46	37.253	1	530820			39584	314	26765	26865	40080	40080					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2535705566406	2	491.253631	980.49271	-0.52397	-0.0002574	0.26081	0.00012812	-0.26316	-0.00012928	491.25378810373866	25.871	0.43184	25.871	25.732	26.164	0					21	8	4	0	0	0	3.736E-08	1	8858	8858		213.85	109.1	1	3597300			39585	314	26765	26865	40081	40081					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2534484863281	2	491.253631	980.49271	-1.26	-0.00061896	-0.042303	-2.0782E-05	-1.3023	-0.00063974	491.2539431572209	25.625	0.20361	25.625	25.531	25.734	0					12	6	3	0	0	0	0.0088974	1	7998	7998		143.37	63.923	1	717950			39586	314	26765	26865	40082	40082					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2532043457031	2	491.253631	980.49271	0.5854	0.00028758	-1.7584	-0.00086384	-1.173	-0.00057626	491.2529390703741	25.877	0.4472	25.877	25.738	26.185	0					16	7	3	0	0	0	0.014413	1	9205	9205		131.62	46.257	1	4015600			39587	314	26765	26865	40083	40083					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2533264160156	2	491.253631	980.49271	-0.075458	-3.7069E-05	-2.0409	-0.0010026	-2.1164	-0.0010397	491.2533968699254	25.695	0.18071	25.695	25.608	25.789	0					8	4	3	0	0	0	0.11411	1	8217	8217		76.17	30.218	1	595270			39588	314	26765	26865	40084	40084					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2533264160156	2	491.253631	980.49271	-2.7198	-0.0013361	1.6003	0.00078614	-1.1195	-0.00054995	491.25451221789075	25.678	0.24446	25.678	25.533	25.778	0					11	6	3	0	0	0	0.0030642	1	8210	8210		168.26	86.018	1	999490			39589	314	26765	26865	40085	40085					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2533874511719	2	491.253631	980.49271	0.80077	0.00039338	-1.8901	-0.00092853	-1.0894	-0.00053515	491.25266774452695	25.84	0.5022	25.84	25.599	26.101	0					12	8	2	0	0	0	0.056004	1	9068	9068		93.143	16.297	1	1801600			39590	314	26765	26865	40086	40086					0.0016829302946916869
STNSHPILRK	10	Unmodified	_STNSHPILRK_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.827880859375	2	576.827829	1151.64111	0.90323	0.00052101	-0.027278	-1.5735E-05	0.87596	0.00050528	577.3294530947481	15.634	0.12098	15.634	15.568	15.689	0					9	5	2	0	0	0	0.41729	1	3435	3435		42.338	7.1861	1	84244			39591	4226	26766	26866	40087	40087					0.07135024003196122
STNSHPILRK	10	Unmodified	_STNSHPILRK_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.8277587890625	2	576.827829	1151.64111	-0.080471	-4.6418E-05	0.61358	0.00035393	0.53311	0.00030751	576.8281404606176	15.958	0.26241	15.958	15.886	16.149	0					9	6	2	0	0	0	0.15441	1	4223	4223		82.831	31.638	1	649950			39592	4226	26766	26866	40088	40088					0.07135024003196122
STNSNLSKHKK	11	Unmodified	_STNSNLSKHKK_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	622.34130859375	2	622.341301	1242.66805	0.38708	0.0002409	-0.076472	-4.7592E-05	0.31061	0.00019331	622.3412750381458	11.381	0.075752	11.381	11.343	11.418	0					6	4	2	0	0	0	0.17416	1	2191	2191		77.533	40.374	1	108680			39593	4476	26767	26867	40089	40089					0.0564208782368496
STNSNLSKHKK	11	Unmodified	_STNSNLSKHKK_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	622.342041015625	2	622.341301	1242.66805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.399	1	11.399	10.899	11.899	0								0	0	0	0.11988	1	2207	2207		55.084	0	1				39594	4476	26767	26867	40090	40090					0.0564208782368496
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2583312988281	2	488.258914	974.503274	-0.079713	-3.8921E-05	-0.14569	-7.1132E-05	-0.2254	-0.00011005	488.25875081822585	18.634	0.16521	18.634	18.568	18.733	0					12	5	3	0	0	0	0.14176	1	4672	4672		88.134	8.6827	1	262300			39595	5817	26768	26868	40091	40091					0.01500275683918062
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.259033203125	2	488.258914	974.503274	0.75163	0.00036699	-0.57607	-0.00028127	0.17556	8.5716E-05	488.25853194463616	18.969	0.31705	18.969	18.865	19.182	0					21	8	4	0	0	0	0.034064	1	5650	5650		115.23	45.604	1	2344500			39596	5817	26768	26868	40092	40092					0.01500275683918062
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.25848388671875	2	488.258914	974.503274	-1.2484	-0.00060953	0.78927	0.00038537	-0.4591	-0.00022416	488.2593592105291	18.63	0.21194	18.63	18.559	18.771	0					14	7	3	0	0	0	0.23114	1	4907	4907		75.652	4.3565	1	364680			39597	5817	26768	26868	40093	40093					0.01500275683918062
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2591247558594	2	488.258914	974.503274	0.62121	0.00030331	-0.48903	-0.00023878	0.13218	6.4538E-05	488.25862674192723	18.875	0.19175	18.875	18.792	18.984	0					8	4	2	0	0	0	0.13022	1	5882	5882		90.149	2.4524	1	1906400			39598	5817	26768	26868	40094	40094					0.01500275683918062
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2582092285156	2	488.258914	974.503274	0.49202	0.00024023	-0.81163	-0.00039628	-0.31961	-0.00015605	488.2584101691898	18.696	0.15876	18.696	18.633	18.792	0					7	4	2	0	0	0	0.41055	1	4921	4921		55.084	7.1683	1	128810			39599	5817	26768	26868	40095	40095					0.01500275683918062
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2586364746094	2	488.258914	974.503274	-0.19769	-9.6524E-05	0.071822	3.5068E-05	-0.12587	-6.1456E-05	488.25899367365935	18.719	0.152	18.719	18.623	18.775	0					10	4	3	0	0	0	0.33468	1	4951	4951		63.426	5.6152	1	311820			39600	5817	26768	26868	40096	40096					0.01500275683918062
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2587890625	2	488.258914	974.503274	-0.52297	-0.00025535	0.20937	0.00010223	-0.31361	-0.00015312	488.25898440779383	18.855	0.44303	18.855	18.719	19.162	0					19	9	4	0	0	0	0.16075	1	5710	5710		84.817	10.562	1	1516900			39601	5817	26768	26868	40097	40097					0.01500275683918062
STNSPVGVSK	10	Unmodified	_STNSPVGVSK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2586364746094	2	488.258914	974.503274	0.79389	0.00038762	-0.54276	-0.00026501	0.25112	0.00012261	488.2586092602232	18.838	0.34325	18.838	18.752	19.096	0					17	7	4	0	0	0	0.16075	1	5751	5751		84.817	10.562	1	2162900			39602	5817	26768	26868	40098	40098					0.01500275683918062
STNTSLLTSK	10	Unmodified	_STNTSLLTSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2863159179688	2	526.285128	1050.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.94	1	24.94	24.44	25.44	0								0	0	0	0.4201	1	7855	7855		22.58	1.7425	1				39603	6102	26769	26869	40099	40099					0.032448140268343195
STNVTSGTIQ	10	Unmodified	_STNVTSGTIQ_					0	0	0			REV__nc|ENSG00000205277|Q9UKN1|MUC12	REV__nc|ENSG00000205277|Q9UKN1|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2524719238281	2	504.253828	1006.4931	-2.0182	-0.0010177	-0.52293	-0.00026369	-2.5411	-0.0012814	504.25352659856856	22.69	0.18872	22.69	22.592	22.781	0					7	4	2	0	0	0	0.36476	1	6807	6807		60.118	3.6845	1	209160	+		39604	21194	26770	26870	40100	40100					-0.009883320413109686
STNWSDVGK	9	Unmodified	_STNWSDVGK_					0	0	0		ENST00000609175.1_1_13:53261778-53261967:+|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.23541259765625	2	497.235439	992.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.874	1	26.874	26.374	27.374	0								0	0	0	0.0029008	1	9323	9323		117.53	10.843	1				39605	5793	26771	26871	40101	40101					-0.040205838672363825
STNWSDVGK	9	Unmodified	_STNWSDVGK_					0	0	0		ENST00000609175.1_1_13:53261778-53261967:+|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2347717285156	2	497.235439	992.456324	-1.154	-0.0005738	0.62107	0.00030882	-0.53292	-0.00026499	497.2357664252806	26.632	0.25325	26.632	26.546	26.8	0					15	9	2	0	0	0	0.22823	1	8393	8393		58.246	6.7185	1	199380			39606	5793	26771	26871	40102	40102					-0.040205838672363825
STNWSDVGK	9	Unmodified	_STNWSDVGK_					0	0	0		ENST00000609175.1_1_13:53261778-53261967:+|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2354431152344	2	497.235439	992.456324	0.99361	0.00049406	-1.2384	-0.00061578	-0.2448	-0.00012172	497.2348081011137	26.844	0.41525	26.844	26.739	27.154	0					21	8	3	0	0	0	0.099758	1	9549	9549		79.489	11.995	1	967200			39607	5793	26771	26871	40103	40103					-0.040205838672363825
STNYNPSLK	9	Unmodified	_STNYNPSLK_					0	0	0		nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000276775|A0A075B6R2|IGHV4-4;nc|ENSG00000211970|A0A0C4DH41|IGHV4-61;nc|ENSG00000211956|P06331|IGHV4-34	nc|ENSG00000224373|P01825|IGHV4-59	nc|ENSG00000224373|P01825|IGHV4-59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2599487304688	2	512.258914	1022.50327	1.1857	0.00060737	-0.64607	-0.00033096	0.5396	0.00027642	512.2590294191648	22.882	0.11545	22.882	22.812	22.928	0					5	3	2	0	0	0	0.43488	1	6550	6550		38.754	6.0031	1	90880			39608	11755	26772	26872	40104	40104					-0.007077243161006663
STNYNPSLK	9	Unmodified	_STNYNPSLK_					0	0	0		nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000276775|A0A075B6R2|IGHV4-4;nc|ENSG00000211970|A0A0C4DH41|IGHV4-61;nc|ENSG00000211956|P06331|IGHV4-34	nc|ENSG00000224373|P01825|IGHV4-59	nc|ENSG00000224373|P01825|IGHV4-59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2589111328125	2	512.258914	1022.50327	1.0627	0.00054437	-2.1228	-0.0010874	-1.0601	-0.00054303	512.2583737292224	23.184	0.27502	23.184	23.049	23.324	0					19	6	4	0	0	0	0.10821	1	7672	7672		77.533	24.444	1	758480			39609	11755	26772	26872	40105	40105					-0.007077243161006663
STPDAVMGNPK	11	Unmodified	_STPDAVMGNPK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.7716064453125	2	558.771331	1115.52811	1.2892	0.00072036	-1.0926	-0.00061053	0.19657	0.00010984	558.7708930162689	23.5	0.19752	23.5	23.397	23.595	0					20	7	4	0	0	0	0.38515	1	6792	6792		53.089	23.919	1	614740			39610	7970	26773	26873	40106	40106					-0.025034125050069633
STPDAVMGNPK	11	Unmodified	_STPDAVMGNPK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7715454101562	2	558.771331	1115.52811	0.52391	0.00029274	-0.20382	-0.00011389	0.32009	0.00017886	558.7712750869672	23.777	0.28265	23.777	23.678	23.961	0					19	6	5	0	0	0	2.9096E-05	1	7928	7928		169.65	86.005	1	2883600			39611	7970	26773	26873	40107	40107					-0.025034125050069633
STPDAVMGNPK	11	Unmodified	_STPDAVMGNPK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.7718505859375	2	558.771331	1115.52811	-0.46944	-0.00026231	1.1532	0.00064436	0.68373	0.00038205	558.7719259986158	23.541	0.16956	23.541	23.442	23.612	0					11	6	2	0	0	0	0.18431	1	7080	7080		76.17	31.792	1	279800			39612	7970	26773	26873	40108	40108					-0.025034125050069633
STPDAVMGNPK	11	Unmodified	_STPDAVMGNPK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7716064453125	2	558.771331	1115.52811	-0.12819	-7.1628E-05	0.68006	0.00038	0.55187	0.00030837	558.7717684388534	23.737	0.26895	23.737	23.629	23.898	0					15	5	4	0	0	0	0.10624	1	8228	8228		88.177	40.217	1	1759200			39613	7970	26773	26873	40109	40109					-0.025034125050069633
STPDAVMGNPK	11	Unmodified	_STPDAVMGNPK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7718505859375	2	558.771331	1115.52811	-0.819	-0.00045763	1.818	0.0010159	0.99902	0.00055822	558.7723922252228	23.551	0.21052	23.551	23.462	23.673	0					11	5	3	0	0	0	0.084047	1	7216	7216		93.598	33.194	1	482160			39614	7970	26773	26873	40110	40110					-0.025034125050069633
STPFGASYLLV	11	Unmodified	_STPFGASYLLV_					0	0	0		SRPK3|p.N389Y|1|0.3|ENSG00000184343|chrX:153784311-153784311|A/T|missense_variant	SRPK3|p.N389Y|1|0.3|ENSG00000184343|chrX:153784311-153784311|A/T|missense_variant	SRPK3|p.N389Y|1|0.3|ENSG00000184343|chrX:153784311-153784311|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.8059692382812	2	577.808239	1153.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.764	1	23.764	23.264	24.264	0								0	0	0	0.45674	1	6923	6923		19.104	0.84144	1				39615	22490	26774	26874	40111	40111					0.03126878928947008
STPGTVHTTK	10	Unmodified	_STPGTVHTTK_					0	0	0		MUC5B|p.A3860V|1|0.07|ENSG00000117983|chr11:1248459-1248459|C/T|missense_variant	MUC5B|p.A3860V|1|0.07|ENSG00000117983|chr11:1248459-1248459|C/T|missense_variant	MUC5B|p.A3860V|1|0.07|ENSG00000117983|chr11:1248459-1248459|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.773681640625	2	514.772188	1027.52982	3.2225	0.0016589	0.035578	1.8315E-05	3.2581	0.0016772	514.7722731936229	35.662	0.61464	35.662	35.501	36.115	0					21	12	3	0	0	0	0.23612	1	13775	13775		75.043	16.261	1	1713100			39616	11389	26775	26875	40112	40112					0.01715964575214457
STPHPPSAPAP	11	Unmodified	_STPHPPSAPAP_					0	0	0			REV__ENST00000302538.9_1_17:909091-909271:-|nuORF	REV__ENST00000302538.9_1_17:909091-909271:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7654418945312	2	529.766906	1057.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.353	1	24.353	23.853	24.853	0								0	0	0	0.45674	1	7443	7443		19.997	0.6368	1		+		39617	18214	26776	26876	40113	40113					-0.00720018079186957
STPHTSTSV	9	Unmodified	_STPHTSTSV_					0	0	0		MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7220153808594	2	458.722164	915.429775	-0.71373	-0.0003274	0.56476	0.00025907	-0.14897	-6.8335E-05	458.7223037537633	17.727	0.2195	17.727	17.668	17.887	0					9	4	3	0	0	0	0.14603	1	5328	5328		68.787	15.435	1	321910			39618	6191	26777	26877	40114	40114					-0.03132272758568888
STPIPRFW	8	Unmodified	_STPIPRFW_					0	0	0		ENST00000509229.1_1_19:45535724-45537626:+|nuORF	ENST00000509229.1_1_19:45535724-45537626:+|nuORF	ENST00000509229.1_1_19:45535724-45537626:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2718505859375	2	502.271627	1002.5287	0.61029	0.00030653	-0.077492	-3.8922E-05	0.5328	0.00026761	502.27164597828727	24.764	0.14452	24.764	24.67	24.814	0					5	3	2	0	0	0	0.63077	1	8387	8387		25.45	6.0902	1	128700			39619	10221	26778	26878	40115	40115					0.027537949969882902
STPKNSGVAEP	11	Unmodified	_STPKNSGVAEP_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7752685546875	2	543.774928	1085.5353	1.8776	0.001021	-1.1802	-0.00064174	0.69742	0.00037924	543.7741822483006	16.581	0.18201	16.581	16.492	16.674	0					9	4	3	0	0	0	0.24586	1	4536	4536		51.528	15.909	1	452890			39620	5926	26779	26879	40116	40116					-0.004043566329528403
STPKSSNPPK	10	Unmodified	_STPKSSNPPK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7802734375	2	521.780013	1041.54547	0.079888	4.1684E-05	0.35268	0.00018402	0.43257	0.00022571	521.7801827271103	12.397	0.49092	12.397	12.139	12.63	0					64	16	5	0	0	0	0.3337	1	2538	2538		63.534	6.8128	1	4607900			39621	3069	26780	26880	40117	40117					0.026362510922808724
STPKSSNPPK	10	Unmodified	_STPKSSNPPK_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7802124023438	2	521.780013	1041.54547	-0.11683	-6.0961E-05	0.20749	0.00010827	0.090661	4.7305E-05	521.7802354564507	12.422	0.38045	12.422	12.208	12.588	0					21	9	3	0	0	0	0.45669	1	2800	2800		50.034	3.5767	1	468620			39622	3069	26780	26880	40118	40118					0.026362510922808724
STPKTTVSSK	10	Unmodified	_STPKTTVSSK_					0	0	0		BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant;BAZ1A|p.R1409Kfs*11|1|0.36|ENSG00000198604|chr14:34761774-34761774|C/-|frameshift_variant;BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant	BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2874145507812	2	518.287671	1034.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.819	1	13.819	13.319	14.319	0								0	0	0	0.39264	1	3451	3451		32.751	9.2278	1				39623	276	26781	26881	40119	40119					0.04489117889465888
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7835998535156	2	477.784567	953.554582	-0.076838	-3.6712E-05	-0.40142	-0.00019179	-0.47826	-0.00022851	477.7843589536998	32.909	0.51365	32.909	32.617	33.131	0					45	21	3	0	0	0	0.66185	1	10602	10602		26.693	0	1	226060			39624	278	26782	26882	40120	40120					0.07594644448602139
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7843322753906	2	477.784567	953.554582	0.64701	0.00030913	-0.86779	-0.00041462	-0.22078	-0.00010548	477.7840744990835	33.148	0.89529	33.148	32.759	33.654	0					46	21	3	0	0	0	0.2978	1	12584	12584		67.494	10.773	1	2085100			39625	278	26782	26882	40121	40121					0.07594644448602139
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.784423828125	2	477.784567	953.554582	0.84754	0.00040494	-0.63767	-0.00030467	0.20987	0.00010027	477.78398403774037	33.143	0.9434	33.143	32.506	33.449	0					51	19	5	0	0	0	0.19797	1	12510	12510		79.713	7.8351	1	2611700			39626	278	26782	26882	40122	40122					0.07594644448602139
STPNPKIASSV	11	Unmodified	_STPNPKIASSV_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.5378723144531	3	367.536389	1099.58734	3.1689	0.0011647	0.79965	0.0002939	3.9685	0.0014586	367.53669532616755	19.715	0.16857	19.715	19.656	19.825	0					5	3	2	0	0	0	0.64562	1	6159	6159		28.577	0	1	1803800			39627	4321	26783	26883	40123	40123					0.041528067808030755
STPSRPSSAK	10	Unmodified	_STPSRPSSAK_					0	0	0		nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.269775390625	2	509.269813	1016.52507	0.928	0.0004726	-0.8576	-0.00043675	0.0704	3.5852E-05	509.26936049742665	13.5	0.45133	13.5	13.265	13.716	0					20	12	2	0	0	0	0.4287	1	3062	3062		53.089	1.7535	1	418590			39628	5957	26784	26884	40124	40124					0.017470804324716482
STPVAREL	8	Unmodified	_STPVAREL_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7453308105469	2	436.745442	871.476331	0.23745	0.0001037	-0.70168	-0.00030645	-0.46423	-0.00020275	436.74524728860445	25.28	0.18585	25.28	25.186	25.372	0					12	5	3	0	0	0	0.72524	1	7594	7594		30.318	1.1682	1	103750			39629	1304	26785	26885	40125	40125					0.03545211863365694
STPVAREL	8	Unmodified	_STPVAREL_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7454833984375	2	436.745442	871.476331	0.75362	0.00032914	-1.0197	-0.00044534	-0.26605	-0.00011619	436.7450030130981	25.577	0.36245	25.577	25.392	25.755	0					17	7	3	0	0	0	0.39125	1	9095	9095		71.877	18.526	1	1124300			39630	1304	26785	26885	40126	40126					0.03545211863365694
STQAEGTRTLK	11	Unmodified	_STQAEGTRTLK_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.320068359375	2	596.320034	1190.62551	0.1256	7.4896E-05	0.083887	5.0023E-05	0.20948	0.00012492	596.3201097081898	16.143	0.18683	16.143	16.049	16.236	0					6	4	2	0	0	0	0.23231	1	4325	4325		70.412	8.3042	1	719120			39631	1899	26786	26886	40127	40127					0.037826926954721785
STQAEGTRTLK	11	Unmodified	_STQAEGTRTLK_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.3203125	2	596.320034	1190.62551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.133	1	16.133	15.633	16.633	0								0	0	0	0.42696	1	4551	4551		31.068	3.1859	1				39632	1899	26786	26886	40128	40128					0.037826926954721785
STQAKQLK	8	Unmodified	_STQAKQLK_					0	0	0			REV__ENSG00000105705|ENST00000247001|SUGP1	REV__ENSG00000105705|ENST00000247001|SUGP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2664794921875	2	452.266542	902.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.674	1	13.674	13.174	14.174	0								0	0	0	1.7419	1	2708	2708		98.629	0.047388	1		+		39633	13793	26787	26887	40129	40129					0.0633718727174255
STQDTLLIKK	10	Unmodified	_STQDTLLIKK_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.84033203125	2	573.840071	1145.66559	-0.11719	-6.7249E-05	0.46614	0.00026749	0.34895	0.00020024	573.8403093965471	24.611	0.22122	24.611	24.519	24.741	0					11	5	3	0	0	0	0.34614	1	8316	8316		66.962	17.426	1	411250			39634	2136	26788	26888	40130	40130					0.09858239366053567
STQDTLLIKK	10	Unmodified	_STQDTLLIKK_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.8957214355469	3	382.895806	1145.66559	0.20303	7.7741E-05	-0.2304	-8.8219E-05	-0.027367	-1.0479E-05	382.89561373212837	24.569	0.21369	24.569	24.463	24.677	0					11	4	4	0	0	0	0.46989	1	8624	8624		48.602	7.1749	1	397890			39635	2136	26788	26888	40131	40131					0.09858239366053567
STQDTLLIKK	10	Unmodified	_STQDTLLIKK_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.8955078125	3	382.895806	1145.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.427	1	24.427	23.927	24.927	0								0	0	0	0.4201	1	7614	7614		24.232	1.6702	1				39636	2136	26788	26888	40132	40132					0.09858239366053567
STQDTLLIKK	10	Unmodified	_STQDTLLIKK_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.89581298828125	3	382.895806	1145.66559	-0.54985	-0.00021054	0.67152	0.00025712	0.12166	4.6585E-05	382.8960738553209	24.539	0.21469	24.539	24.43	24.645	0					8	4	2	0	0	0	0.61238	1	8492	8492		32.751	4.669	1	777800			39637	2136	26788	26888	40133	40133					0.09858239366053567
STQDTTAFSK	10	Unmodified	_STQDTTAFSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2593994140625	2	543.259111	1084.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.685	1	20.685	20.185	21.185	0								0	0	0	0.045399	1	5819	5819		92.239	41.046	1				39638	4655	26789	26889	40134	40134					-0.03520349386917587
STQDTTAFSK	10	Unmodified	_STQDTTAFSK_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.259521484375	2	543.259111	1084.50367	1.0767	0.00058493	0.013597	7.3867E-06	1.0903	0.00059232	543.2588901838074	20.699	0.14758	20.699	20.644	20.792	0					5	3	2	0	0	0	0.28855	1	5885	5885		68.626	27.848	1	100470			39639	4655	26789	26889	40135	40135					-0.03520349386917587
STQEGVRKK	9	Unmodified	_STQEGVRKK_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7946166992188	2	516.793455	1031.57236	1.4863	0.00076812	-1.4946	-0.00077241	-0.0083059	-4.2924E-06	516.7938251386034	10.902	0.069933	10.902	10.853	10.923	0					5	3	2	0	0	0	0.037924	1	2129	2129		101.25	29.957	1	117530			39640	4109	26790	26890	40136	40136					0.057833597034687045
STQGKHCGKCV	11	Unmodified	_STQGKHCGKCV_					0	0	0			REV__ENST00000558830.5_1_15:79165359-79172915:+|nuORF	REV__ENST00000558830.5_1_15:79165359-79172915:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.1816711425781	3	383.183076	1146.5274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.751	1	24.751	24.251	25.251	0								0	0	0	0.39826	1	8700	8700		37.508	1.0614	1		+		39641	20272	26791	26891	40137	40137					-0.040005304257419994
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2632751464844	2	466.263999	930.513445	0.062843	2.9301E-05	-1.2121	-0.00056516	-1.1493	-0.00053586	466.2635913909303	18.688	0.11115	18.688	18.622	18.733	0					5	3	2	0	0	0	0.070005	1	4688	4688		88.177	35.24	1	137230			39642	4803	26792	26892	40138	40138					0.04540883409129037
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2638854980469	2	466.263999	930.513445	0.43985	0.00020509	-1.1452	-0.00053395	-0.70532	-0.00032887	466.26345507528396	19.006	0.24174	19.006	18.896	19.138	0					12	6	3	0	0	0	0.02429	1	5654	5654		114.89	46.108	1	960670			39643	4803	26792	26892	40139	40139					0.04540883409129037
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.263671875	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.763	1	18.763	18.263	19.263	0								0	0	0	0.069826	1	4961	4961		80.455	39.676	1				39644	4803	26792	26892	40140	40140					0.04540883409129037
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.263427734375	2	466.263999	930.513445	-0.61381	-0.0002862	-0.083554	-3.8958E-05	-0.69737	-0.00032516	466.26395625287057	18.736	0.13885	18.736	18.676	18.815	0					5	3	2	0	0	0	0.18416	1	4954	4954		63.534	8.8115	1	148270			39645	4803	26792	26892	40141	40141					0.04540883409129037
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2640075683594	2	466.263999	930.513445	-0.49856	-0.00023246	0.90496	0.00042195	0.40639	0.00018949	466.26459727224625	18.906	0.39405	18.906	18.669	19.063	0					11	8	3	0	0	0	0.10506	1	5760	5760		78.264	17.292	1	758200			39646	4803	26792	26892	40142	40142					0.04540883409129037
STQKGQIKK	9	Unmodified	_STQKGQIKK_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.873046875	3	339.873224	1016.59784	0.36583	0.00012433	-0.80125	-0.00027232	-0.43543	-0.00014799	339.8729748945945	11.212	0.1053	11.212	11.137	11.242	0					7	3	3	0	0	0	0.15163	1	2240	2240		83.647	32.119	1	398560			39647	6286	26793	26893	40143	40143					0.09020834225896124
STQKGQIKK	9	Unmodified	_STQKGQIKK_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3072814941406	2	509.306198	1016.59784	1.169	0.00059538	-1.1676	-0.00059469	0.0013635	6.9442E-07	509.3055254855888	11.196	0.17261	11.196	11.126	11.298	0					13	6	4	0	0	0	0.0040894	1	2236	2236		162.25	55.569	1	2739100			39648	6286	26793	26893	40144	40144					0.09020834225896124
STQKGQIKK	9	Unmodified	_STQKGQIKK_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3062438964844	2	509.306198	1016.59784	-0.40578	-0.00020666	0.3342	0.00017021	-0.071578	-3.6455E-05	509.30640406202264	11.19	0.13065	11.19	11.116	11.247	0					8	4	3	0	0	0	0.0071053	1	2242	2242		148.99	52.953	1	1073600			39649	6286	26793	26893	40145	40145					0.09020834225896124
STQKGQIKK	9	Unmodified	_STQKGQIKK_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.3067626953125	2	509.306198	1016.59784	3.0086	0.0015323	-1.8628	-0.00094873	1.1458	0.00058357	509.30531047752976	11.201	0.075136	11.201	11.147	11.222	0					10	4	3	0	0	0	0.014688	1	2151	2151		131.03	29.431	1	319240			39650	6286	26793	26893	40146	40146					0.09020834225896124
STQKKIITP	9	Unmodified	_STQKKIITP_					0	0	0		ENST00000571720.2_1_16:68596924-68598598:+|nuORF;ZFP90|p.N617Kfs*10|1|0.27|ENSG00000184939|chr16:68564632-68564633|-/A|frameshift_variant;ENSG00000184939|ENST00000563169|ZFP90	ENST00000571720.2_1_16:68596924-68598598:+|nuORF	ENST00000571720.2_1_16:68596924-68598598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.2096862792969	3	339.209725	1014.60735	0.51253	0.00017386	-0.97926	-0.00033217	-0.46673	-0.00015832	339.2094284544895	24.446	0.2328	24.446	24.34	24.573	0					16	5	5	0	0	0	0.28897	1	8238	8238		51.193	0	1	1638900			39651	7045	26794	26894	40147	40147					0.10062602511413843
STQLGRHILL	10	Unmodified	_STQLGRHILL_					0	0	0			REV__ENST00000378641.7_2_20:8113010-8113124:+|nuORF	REV__ENST00000378641.7_2_20:8113010-8113124:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.8958740234375	3	379.89614	1136.66659	-0.1337	-5.0793E-05	-0.11119	-4.224E-05	-0.24489	-9.3033E-05	379.8960567854918	19.709	0.22715	19.709	19.617	19.844	0					6	5	2	0	0	0	0.56931	1	5414	5414		37.812	2.6595	1	173450	+		39652	18748	26795	26895	40148	40148					0.10372498525612173
STQLPSAQIQ	10	Unmodified	_STQLPSAQIQ_					0	0	0			REV__nc|ENSG00000198022|A6NJ88|SAGE2P	REV__nc|ENSG00000198022|A6NJ88|SAGE2P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7860717773438	2	536.785296	1071.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.176	1	19.176	18.676	19.676	0								0	0	0	0.3185	1	4911	4911		47.96	3.5823	1		+		39653	21184	26796	26896	40149	40149					0.02312233746692982
STQNGPVFAK	10	Unmodified	_STQNGPVFAK_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.774658203125	2	524.774731	1047.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.39	1	23.39	22.89	23.89	0								0	0	0	0.010396	1	7737	7737		106.68	29.909	1				39654	1951	26797	26897	40150	40150					0.013042684378433478
STQNGPVFAK	10	Unmodified	_STQNGPVFAK_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7776489257812	2	524.774731	1047.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.284	1	23.284	22.784	23.784	0								0	0	0	0.017571	1	8002	8002		123.21	51.331	1				39655	1951	26797	26897	40151	40151					0.013042684378433478
STQNGPVFAK	10	Unmodified	_STQNGPVFAK_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7752685546875	2	524.774731	1047.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.302	1	23.302	22.802	23.802	0								0	0	0	0.014942	1	7882	7882		112.11	64.192	1				39656	1951	26797	26897	40152	40152					0.013042684378433478
STQNGPVFAK	10	Unmodified	_STQNGPVFAK_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7766723632812	2	524.774731	1047.53491	3.435	0.0018026	1.9463	0.0010214	5.3813	0.002824	524.7756679193724	23.26	0.31737	23.26	23.15	23.467	0					9	6	2	0	0	0	0.4287	1	7876	7876		53.089	8.9722	1	557290			39657	1951	26797	26897	40153	40153					0.013042684378433478
STQPTSYDQ	9	Unmodified	_STQPTSYDQ_					0	0	0		ENST00000479135.5_1_22:29673993-29684776:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;EWSR1|p.P622Lfs*4|1|0.39|ENSG00000182944|chr22:29299775-29299775|G/-|frameshift_variant;EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant;EWSR1|p.M605Tfs*41|1|0.09|ENSG00000182944|chr22:29299733-29299734|-/CCTC|frameshift_variant;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1;nc|ENSG00000182944|Q01844-2|EWSR1	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7235107421875	2	513.722361	1025.43017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.51	1	21.51	21.01	22.01	0								0	0	0	0.3693	1	5936	5936		19.997	0.89325	1				39658	6928	26798	26898	40154	40154					-0.081528978293818
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.833251953125	2	631.832974	1261.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.505	1	15.505	15.005	16.005	0								0	0	0	0.45674	1	3385	3385		23.378	5.9099	1				39659	2982	26799	26899	40155	40155					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.5575256347656	3	421.557741	1261.6514	1.0244	0.00043183	-0.97489	-0.00041097	0.049488	2.0862E-05	421.5571281687124	15.778	0.1277	15.778	15.697	15.824	0					7	3	3	0	0	0	0.54316	1	4159	4159		41.08	8.3295	1	403700			39660	2982	26799	26899	40156	40156					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.8328247070312	2	631.832974	1261.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.554	1	15.554	15.054	16.054	0								0	0	0	0.45674	1	3572	3572		25.126	3.1661	1				39661	2982	26799	26899	40157	40157					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	631.8317260742188	2	631.832974	1261.6514	-2.1888	-0.001383	1.5633	0.00098773	-0.62556	-0.00039525	631.8338685295723	15.532	0.13201	15.532	15.464	15.596	0					6	4	2	0	0	0	0.2545	1	3500	3500		84.817	33.625	1	88394			39662	2982	26799	26899	40158	40158					0.0310354214709605
STQQPLTKK	9	Unmodified	_STQQPLTKK_					0	0	0		ENST00000496379.5_1_15:91433070-91435551:+|nuORF;ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7985229492188	2	515.798206	1029.58186	0.2289	0.00011807	0.4246	0.00021901	0.6535	0.00033707	515.7983119076605	14.176	0.1163	14.176	14.086	14.203	0					13	5	3	0	0	0	0.38666	1	2863	2863		42.864	11.334	1	217030			39663	6900	26800	26900	40159	40159					0.06825127988986424
STQQPLTKK	9	Unmodified	_STQQPLTKK_					0	0	0		ENST00000496379.5_1_15:91433070-91435551:+|nuORF;ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.2011413574219	3	344.201229	1029.58186	0.93536	0.00032195	-1.515	-0.00052147	-0.57966	-0.00019952	344.2008273077979	14.497	0.13197	14.497	14.39	14.522	0					5	3	2	0	0	0	0.25716	1	3542	3542		53.089	19.002	1	69451			39664	6900	26800	26900	40160	40160					0.06825127988986424
STQQPLTKK	9	Unmodified	_STQQPLTKK_					0	0	0		ENST00000496379.5_1_15:91433070-91435551:+|nuORF;ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7987060546875	2	515.798206	1029.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.464	1	14.464	13.964	14.964	0								0	0	0	0.00080341	1	3527	3527		128.6	37.826	1				39665	6900	26800	26900	40161	40161					0.06825127988986424
STQQPLTKK	9	Unmodified	_STQQPLTKK_					0	0	0		ENST00000496379.5_1_15:91433070-91435551:+|nuORF;ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	ENST00000496379.5_1_15:91433070-91435551:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7985229492188	2	515.798206	1029.58186	0.073496	3.7909E-05	0.61888	0.00031922	0.69238	0.00035713	515.7984166824187	14.182	0.12411	14.182	14.097	14.221	0					11	6	2	0	0	0	0.02429	1	3018	3018		114.89	21.699	1	241530			39666	6900	26800	26900	40162	40162					0.06825127988986424
STQQSKKPL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STQQSKKPL_					1	0	0			REV__ENST00000441864.6_1_19:50170019-50170310:+|nuORF	REV__ENST00000441864.6_1_19:50170019-50170310:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7957153320312	2	529.795663	1057.57677	0.45381	0.00024043	0.053628	2.8412E-05	0.50744	0.00026884	529.7957823638922	23.984	0.17564	23.984	23.919	24.095	0					11	5	3	0	0	0	0.28897	1	7006	7006		51.193	8.7966	1	182620	+		39667	19244	26801	26901	40163	40163					0.05028824126384279
STQRLPSL	8	Unmodified	_STQRLPSL_					0	0	0			REV__ENST00000476304.5_1_7:100218482-100231271:-|nuORF	REV__ENST00000476304.5_1_7:100218482-100231271:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.258056640625	2	451.258717	900.50288	-0.31425	-0.00014181	-1.2447	-0.00056166	-1.5589	-0.00070347	451.25791013741963	34.44	0.11672	34.44	34.397	34.513	0					8	5	2	0	0	0	0.6088	1	11262	11262		47.657	5.2612	1	68958	+		39668	19538	26802	26902	40164	40164					0.048649007547169276
STQRQNVVK	9	Unmodified	_STQRQNVVK_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.299072265625	2	530.298904	1058.58326	2.3802	0.0012622	-2.1998	-0.0011665	0.18042	9.5674E-05	530.2978702089537	14.188	0.12932	14.188	14.104	14.234	0					5	3	2	0	0	0	0.38666	1	3412	3412		42.864	0.46813	1	288730			39669	955	26803	26903	40165	40165					0.05630762077748841
STQSKVMNK	9	Unmodified	_STQSKVMNK_					0	0	0		nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2709350585938	2	511.768591	1021.52263	-0.1279	-6.5453E-05	0.43827	0.00022429	0.31037	0.00015884	511.7687813164112	13.867	0.094542	13.867	13.826	13.92	0					10	4	3	0	0	0	0.19952	1	2771	2771		61.691	3.88	1	194120			39670	5759	26804	26904	40166	40166					0.012729087031630115
STQSKVMNK	9	Unmodified	_STQSKVMNK_					0	0	0		nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7685852050781	2	511.768591	1021.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.193	1	14.193	13.693	14.693	0								0	0	0	0.006929	1	3405	3405		155.58	54.332	1				39671	5759	26804	26904	40167	40167					0.012729087031630115
STQSKVMNK	9	Unmodified	_STQSKVMNK_					0	0	0		nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.76849365234375	2	511.768591	1021.52263	-0.19977	-0.00010223	0.08116	4.1535E-05	-0.11861	-6.0699E-05	511.7686379295138	13.896	0.10163	13.896	13.848	13.95	0					6	4	2	0	0	0	0.021961	1	2925	2925		118.74	55.437	1	211500			39672	5759	26804	26904	40168	40168					0.012729087031630115
STQSKVMNK	9	Unmodified	_STQSKVMNK_					0	0	0		nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7686462402344	2	511.768591	1021.52263	-0.44473	-0.0002276	0.29394	0.00015043	-0.15079	-7.717E-05	511.7689263214181	14.115	0.15907	14.115	14.058	14.217	0					7	3	3	0	0	0	0.011389	1	3597	3597		138.06	41.872	1	1082600			39673	5759	26804	26904	40169	40169					0.012729087031630115
STQSKVMNK	9	Unmodified	_STQSKVMNK_					0	0	0		nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.76837158203125	2	511.768591	1021.52263	3.1064	0.0015898	-4.2612	-0.0021808	-1.1548	-0.00059099	511.76679741786455	14.129	0.21709	14.129	14.073	14.29	0					8	4	3	0	0	0	0.0055674	1	3455	3455		155.58	53.984	1	1554500			39674	5759	26804	26904	40170	40170					0.012729087031630115
STQSLPRL	8	Unmodified	_STQSLPRL_					0	0	0		FAM47C|p.P596Rfs*229|1|0.19|ENSG00000198173|chrX:37010192-37010192|C/-|frameshift_variant;FAM47C|p.P200Rfs*625|3|0.21|ENSG00000198173|chrX:37009004-37009004|C/-|frameshift_variant;FAM47C|p.K504Rfs*321|1|0.71|ENSG00000198173|chrX:37009914-37009914|C/-|frameshift_variant;FAM47C|p.E672Rfs*153|1|0.71|ENSG00000198173|chrX:37010418-37010418|C/-|frameshift_variant	FAM47C|p.P596Rfs*229|1|0.19|ENSG00000198173|chrX:37010192-37010192|C/-|frameshift_variant	FAM47C|p.P596Rfs*229|1|0.19|ENSG00000198173|chrX:37010192-37010192|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2580261230469	2	451.258717	900.50288	-0.50122	-0.00022618	-1.841	-0.00083077	-2.3422	-0.0010569	451.25750615709995	34.726	0.39237	34.726	34.641	35.033	0					16	10	3	0	0	0	0.58597	1	12969	12969		51.335	1.8939	1	342850			39675	11130	26805	26905	40171	40171					0.0486490075469419
STQSLSLQR	9	Unmodified	_STQSLSLQR_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.27899169921875	2	510.277638	1018.54072	-0.11522	-5.8792E-05	1.4376	0.0007336	1.3224	0.00067481	510.2782928489345	24.825	0.1436	24.825	24.746	24.889	0					7	4	2	0	0	0	0.28504	1	7379	7379		51.528	23.273	1	123010			39676	7196	26806	26906	40172	40172					0.032193669495200083
STQSLSLQR	9	Unmodified	_STQSLSLQR_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2792053222656	2	510.277638	1018.54072	-0.010148	-5.1784E-06	1.3372	0.00068237	1.3271	0.00067719	510.278399599865	25.098	0.28083	25.098	25.008	25.289	0					14	6	3	0	0	0	0.13907	1	8524	8524		70.399	12.169	1	768460			39677	7196	26806	26906	40173	40173					0.032193669495200083
STQSLSLQR	9	Unmodified	_STQSLSLQR_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2785949707031	2	510.277638	1018.54072	-0.44065	-0.00022486	2.8903	0.0014749	2.4497	0.00125	510.2785635114004	24.841	0.16702	24.841	24.777	24.944	0					10	5	3	0	0	0	0.24169	1	7660	7660		56.632	12.255	1	178840			39678	7196	26806	26906	40174	40174					0.032193669495200083
STQSLSLQR	9	Unmodified	_STQSLSLQR_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2781982421875	2	510.277638	1018.54072	1.1973	0.00061095	2.1136	0.0010785	3.3109	0.0016895	510.27795987572017	25.087	0.26529	25.087	24.94	25.205	0					12	5	3	0	0	0	0.22837	1	8880	8880		58.23	22.612	1	605950			39679	7196	26806	26906	40175	40175					0.032193669495200083
STQSLSLQR	9	Unmodified	_STQSLSLQR_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2777404785156	2	510.277638	1018.54072	-0.41916	-0.00021389	0.78319	0.00039965	0.36403	0.00018576	510.2780228373351	25.081	0.16441	25.081	24.974	25.138	0					5	3	2	0	0	0	0.12834	1	8869	8869		72.879	26.422	1	177430			39680	7196	26806	26906	40176	40176					0.032193669495200083
STQSLSLQR	9	Unmodified	_STQSLSLQR_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2784118652344	2	510.277638	1018.54072	-1.8101	-0.00092367	3.0342	0.0015483	1.224	0.0006246	510.2793195020725	24.93	0.15482	24.93	24.844	24.999	0					5	3	2	0	0	0	0.28504	1	7847	7847		51.528	6.9967	1	117410			39681	7196	26806	26906	40177	40177					0.032193669495200083
STQSLSLQR	9	Unmodified	_STQSLSLQR_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2794189453125	2	510.277638	1018.54072	3.0507	0.0015567	-0.58913	-0.00030062	2.4615	0.0012561	510.27693161498814	25.014	0.40957	25.014	24.837	25.247	0					18	8	4	0	0	0	0.082776	1	8703	8703		83.647	50.131	1	837770			39682	7196	26806	26906	40178	40178					0.032193669495200083
STQSRDSINK	10	Unmodified	_STQSRDSINK_					0	0	0		ENST00000511220.1_1_5:92603510-92603882:+|nuORF;ENSG00000106628|ENST00000610533|POLD2	ENST00000511220.1_1_5:92603510-92603882:+|nuORF	ENST00000511220.1_1_5:92603510-92603882:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.2891845703125	2	568.288734	1134.56291	3.4676	0.0019706	-2.6362	-0.0014981	0.83137	0.00047246	568.2874251640478	13.792	0.21002	13.792	13.687	13.897	0					6	4	2	0	0	0	0.50287	1	3298	3298		45.022	14.519	1	214000			39683	2450	26807	26907	40179	40179					0.0010154662729746633
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7791442871094	2	481.779482	961.544411	0.044035	2.1215E-05	-2.034	-0.00097994	-1.99	-0.00095873	481.7790760102855	26.367	0.25966	26.367	26.254	26.514	0					15	8	4	0	0	0	0.11411	1	7997	7997		76.17	9.7404	1	176390			39684	6346	26808	26908	40180	40180					0.06210036723371104
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7792663574219	2	481.779482	961.544411	0.55261	0.00026623	-2.4899	-0.0011996	-1.9373	-0.00093337	481.77893805928954	26.633	0.28098	26.633	26.494	26.775	0					22	6	5	0	0	0	0.013298	1	9202	9202		133.99	38.178	1	1584100			39685	6346	26808	26908	40181	40181					0.06210036723371104
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7799072265625	2	481.779482	961.544411	3.4702	0.0016719	-2.3981	-0.0011554	1.0721	0.00051653	481.7782012413103	26.349	0.16648	26.349	26.286	26.452	0					8	5	2	0	0	0	0.067603	1	8277	8277		89.029	20.183	1	61481			39686	6346	26808	26908	40182	40182					0.06210036723371104
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7793273925781	2	481.779482	961.544411	-0.10438	-5.029E-05	-2.3068	-0.0011114	-2.4111	-0.0011616	481.7791443238477	26.637	0.31899	26.637	26.526	26.845	0					18	6	4	0	0	0	0.001056	1	9543	9543		182.39	52.709	1	582760			39687	6346	26808	26908	40183	40183					0.06210036723371104
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7797546386719	2	481.779482	961.544411	0.14291	6.8849E-05	0.26902	0.00012961	0.41193	0.00019846	481.7797830009778	26.447	0.14196	26.447	26.353	26.495	0					9	3	3	0	0	0	0.082776	1	8506	8506		83.647	10.768	1	96164			39688	6346	26808	26908	40184	40184					0.06210036723371104
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7800598144531	2	481.779482	961.544411	-0.28753	-0.00013853	-1.2828	-0.00061804	-1.5704	-0.00075657	481.7792744641254	26.43	0.22937	26.43	26.336	26.565	0					10	5	3	0	0	0	0.090954	1	8502	8502		81.525	4.7509	1	147860			39689	6346	26808	26908	40185	40185					0.06210036723371104
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.77923583984375	2	481.779482	961.544411	-0.61977	-0.00029859	-1.525	-0.00073473	-2.1448	-0.0010333	481.7795403270684	26.565	0.32066	26.565	26.451	26.772	0					20	6	5	0	0	0	0.0028263	1	9408	9408		169.65	48.784	1	949930			39690	6346	26808	26908	40186	40186					0.06210036723371104
STQTALTLK	9	Unmodified	_STQTALTLK_					0	0	0		SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	SLFN12|p.V491Cfs*4|1|0.28|ENSG00000172123|chr17:35411605-35411605|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.779296875	2	481.779482	961.544411	0.90367	0.00043537	-1.9851	-0.00095639	-1.0814	-0.00052102	481.77885105375793	26.594	0.27024	26.594	26.486	26.756	0					16	5	4	0	0	0	5.2046E-05	1	9405	9405		195.57	57.511	1	813560			39691	6346	26808	26908	40187	40187					0.06210036723371104
STRARSKLP	9	Unmodified	_STRARSKLP_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.5392761230469	3	339.205085	1014.59343	-0.70088	-0.00023774	0.62623	0.00021242	-0.074653	-2.5323E-05	339.2052694283458	14.174	0.1418	14.174	14.121	14.262	0					10	6	2	0	0	0	0.61124	1	3024	3024		25.574	25.574	1	102240			39692	4015	26809	26909	40188	40188					0.08671369802982554
STRDSKEGGK	10	Unmodified	_STRDSKEGGK_					0	0	0		nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7708740234375	2	532.770177	1063.5258	1.719	0.00091585	0.44836	0.00023887	2.1674	0.0011547	532.7703596404696	12.431	0.41938	12.431	12.223	12.642	0					21	10	3	0	0	0	0.59277	1	2766	2766		35.152	1.6364	1	805720			39693	11420	26810	26910	40189	40189					-0.0034212491848393256
STRFFDIQLG	10	Unmodified	_STRFFDIQLG_					0	0	0		nc|ENSG00000086289|Q9UM22-3|EPDR1;ENSG00000086289|ENST00000199448|EPDR1	nc|ENSG00000086289|Q9UM22-3|EPDR1	nc|ENSG00000086289|Q9UM22-3|EPDR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.2071533203125	3	395.208384	1182.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.688	1	17.688	17.188	18.188	0								0	0	0	0.40797	1	4268	4268		28.081	1.3886	1				39694	1746	26811	26911	40190	40190					0.019325130177094252
STRGVPLLQ	9	Unmodified	_STRGVPLLQ_					0	0	0			REV__ENSG00000258484|ENST00000310673|SPESP1	REV__ENSG00000258484|ENST00000310673|SPESP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7865295410156	2	485.787641	969.56073	-2.9144	-0.0014158	-0.1103	-5.3585E-05	-3.0247	-0.0014693	485.78813236277637	33.158	0.18127	33.158	33.111	33.292	0					6	5	2	0	0	0	0.41113	1	11607	11607		40.778	4.3314	1	67357	+		39695	17769	26812	26912	40191	40191					0.07473162680128098
STRITLLLK	9	Unmodified	_STRITLLLK_					0	0	0			REV__ENST00000376234.7_3_13:101316529-101320909:-|nuORF	REV__ENST00000376234.7_3_13:101316529-101320909:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.89715576171875	3	348.89737	1043.67028	0.33446	0.00011669	-0.66962	-0.00023363	-0.33516	-0.00011694	348.89715720984947	22.128	0.16591	22.128	22.021	22.187	0					5	3	2	0	0	0	0.56424	1	7458	7458		25.574	4.6271	1	140850	+		39696	18715	26813	26913	40192	40192					0.15019168299454577
STRKMMKK	8	Unmodified	_STRKMMKK_					0	0	0		ENST00000536889.1_1_X:102564780-102564858:-|nuORF	ENST00000536889.1_1_X:102564780-102564858:-|nuORF	ENST00000536889.1_1_X:102564780-102564858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.28741455078125	2	505.285897	1008.55724	3.6977	0.0018684	-0.77993	-0.00039409	2.9178	0.0014743	505.2854562708653	19.663	0.10103	19.663	19.596	19.697	0					5	3	2	0	0	0	0.69548	1	5375	5375		24.203	0	1	80988			39697	10496	26814	26914	40193	40193					0.05330453310273242
STRQIYTRK	9	Unmodified	_STRQIYTRK_					0	0	0			REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.88751220703125	3	384.887645	1151.64111	0.2228	8.5751E-05	-0.55744	-0.00021455	-0.33464	-0.0001288	384.8874528997491	15.922	0.16023	15.922	15.818	15.979	0					6	3	2	0	0	0	0.47038	1	4460	4460		35.618	6.4482	1	1069800	+		39698	19823	26815	26915	40194	40194					0.07135024003196122
STRRHQEAQ	9	Unmodified	_STRRHQEAQ_					0	0	0		nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1	nc|ENSG00000105290|P51693|APLP1	nc|ENSG00000105290|P51693|APLP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.781982421875	2	556.78141	1111.54827	3.5141	0.0019566	-2.8384	-0.0015804	0.67573	0.00037623	556.780052446297	15.339	0.11682	15.339	15.28	15.397	0					6	2	3	0	0	0	0.47038	1	4033	4033		35.618	2.8059	1	554280			39699	2344	26816	26916	40195	40195					-0.003044807302103436
STRTEVPSSV	10	Unmodified	_STRTEVPSSV_					0	0	0			REV__nc|ENSG00000151746|Q96G01-4|BICD1	REV__nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.85235595703125	3	354.852377	1061.5353	1.4274	0.00050651	0.63928	0.00022685	2.0667	0.00073336	354.85265994603225	13.201	0.25148	13.201	13.006	13.258	0					8	5	2	0	0	0	0.65895	1	3020	3020		27.047	2.8446	1	274130	+		39700	15488	26817	26917	40196	40196					0.006996433670565239
STSAFSRLEK	10	Unmodified	_STSAFSRLEK_					0	0	0		nc|ENSG00000059377|P24557-4|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000476637.5_1_7:139529186-139636014:+|nuORF	nc|ENSG00000059377|P24557-4|TBXAS1	nc|ENSG00000059377|P24557-4|TBXAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.298583984375	2	563.29857	1124.58259	0.087431	4.925E-05	0.37777	0.0002128	0.4652	0.00026205	563.2987823302439	24.882	0.26194	24.882	24.729	24.991	0					7	5	2	0	0	0	0.13663	1	8775	8775		89.029	11.711	1	165740			39701	1309	26818	26918	40197	40197					0.025279226380462205
STSAPWPNNAK	11	Unmodified	_STSAPWPNNAK_					0	0	0			REV__ENST00000551553.1_1_12:57846273-57850628:+|nuORF	REV__ENST00000551553.1_1_12:57846273-57850628:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.5277404785156	3	391.528005	1171.56219	-1.2347	-0.00048343	1.1273	0.00044136	-0.10747	-4.2077E-05	391.5283633899827	16.082	0.15471	16.082	16.011	16.166	0					8	5	2	0	0	0	0.7098	1	3788	3788		23.378	0	1	140970	+		39702	15018	26819	26919	40198	40198					-0.016732480217797274
STSASNTQPGE	11	Unmodified	_STSASNTQPGE_					0	0	0			REV__AKAP6|p.E1418Kfs*19|1|0.26|ENSG00000151320|chr14:32822061-32822061|G/-|frameshift_variant	REV__AKAP6|p.E1418Kfs*19|1|0.26|ENSG00000151320|chr14:32822061-32822061|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8092651367188	2	539.736	1077.45745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.438	1	12.438	11.938	12.938	0								0	0	0	0.2671	1	2798	2798		56.434	6.8977	1		+		39703	12128	26820	26920	40199	40199					-0.07818414288976783
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(100)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2557067871094	2	503.255317	1004.49608	-0.053578	-2.6964E-05	-0.16595	-8.3513E-05	-0.21952	-0.00011048	503.2553138358387	17.729	0.15174	17.729	17.649	17.801	0					11	4	3	0	0	0	0.034359	1	4274	4274		104.75	33.451	1	585910			39704	3682	26821	26921	40200	40200	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(170)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2551574707031	2	503.255317	1004.49608	-0.06432	-3.2369E-05	-0.070983	-3.5723E-05	-0.1353	-6.8092E-05	503.25542466387714	18.033	0.24468	18.033	17.926	18.171	0					15	5	4	0	0	0	0.0025305	1	5190	5190		171.38	46.791	1	3334400			39705	3682	26821	26921	40201	40201	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(150)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2554931640625	2	503.255317	1004.49608	-0.87509	-0.00044039	0.022251	1.1198E-05	-0.85284	-0.0004292	503.25560764461045	17.737	0.21689	17.737	17.626	17.843	0					22	6	5	0	0	0	0.0073253	1	4492	4492		148.04	46.442	1	2150400			39706	3682	26821	26921	40202	40202	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(160)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2552185058594	2	503.255317	1004.49608	1.0038	0.00050518	-1.5019	-0.00075585	-0.4981	-0.00025067	503.25475534952744	17.996	0.52174	17.996	17.634	18.156	0					32	10	5	0	0	0	0.0041499	1	5431	5431		161.9	50.25	1	17121000			39707	3682	26821	26921	40203	40203	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(100)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2555236816406	2	503.255317	1004.49608	-0.49652	-0.00024988	-0.068335	-3.439E-05	-0.56485	-0.00028427	503.25570000341605	17.979	0.16815	17.979	17.87	18.038	0					8	3	3	0	0	0	0.034359	1	5449	5449		104.75	35.119	1	380420			39708	3682	26821	26921	40204	40204	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(160)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2556457519531	2	503.255317	1004.49608	0.12862	6.4728E-05	-0.59807	-0.00030098	-0.46945	-0.00023625	503.2551275399494	17.786	0.27822	17.786	17.598	17.876	0					15	6	4	0	0	0	0.0040894	1	4501	4501		162.25	62.878	1	1066100			39709	3682	26821	26921	40205	40205	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(180)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2548828125	2	503.255317	1004.49608	-2.0458	-0.0010296	1.0676	0.00053726	-0.97826	-0.00049232	503.25602519248935	17.802	0.28284	17.802	17.672	17.955	0					16	6	4	0	0	0	0.0012031	1	4509	4509		180.93	69.278	1	1099400			39710	3682	26821	26921	40206	40206	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(160)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2552185058594	2	503.255317	1004.49608	1.1748	0.00059122	-1.967	-0.00098988	-0.79215	-0.00039865	503.2545896775692	17.97	0.55377	17.97	17.717	18.271	0					21	11	3	0	0	0	0.0041499	1	5277	5277		161.9	62.523	1	7570000			39711	3682	26821	26921	40207	40207	158				-0.005987801881701671
STSCPVVQK	9	Carbamidomethyl (C)	_STSC(Carbamidomethyl (C))PVVQK_	STSC(1)PVVQK		STSC(160)PVVQK		0	1	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2552795410156	2	503.255317	1004.49608	2.929	0.001474	-3.333	-0.0016774	-0.40403	-0.00020333	503.2537997032802	17.955	0.60256	17.955	17.751	18.353	0					31	12	4	0	0	0	0.0051608	1	5288	5288		157.33	45.681	1	8205100			39712	3682	26821	26921	40208	40208	158				-0.005987801881701671
STSDILSEK	9	Unmodified	_STSDILSEK_					0	0	0		ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.L1048*|1|0.18|ENSG00000133858|chr12:71632189-71632189|A/-|frameshift_variant;ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant;ZFC3H1|p.K385Nfs*9|5|0.36|ENSG00000133858|chr12:71645001-71645001|T/-|frameshift_variant;ZFC3H1|p.E390Nfs*4|1|0.39|ENSG00000133858|chr12:71644989-71644989|T/-|frameshift_variant;ZFC3H1|p.V423Sfs*2|1|0.32|ENSG00000133858|chr12:71644889-71644890|-/T|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2512512207031	2	490.250754	978.486955	-1.256	-0.00061574	1.1523	0.00056493	-0.10364	-5.081E-05	490.2514556189895	26.661	0.13924	26.661	26.604	26.743	0					8	5	2	0	0	0	0.55048	1	8420	8420		27.047	1.4733	1	55035			39713	3875	26822	26922	40209	40209					-0.003148502728549829
STSDKIFFH	9	Unmodified	_STSDKIFFH_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2703247070312	2	541.269281	1080.52401	1.8936	0.001025	-0.34658	-0.0001876	1.547	0.00083736	541.2688388859965	30.916	0.26541	30.916	30.788	31.053	0					17	6	4	0	0	0	0.30257	1	11213	11213		42.864	12.547	1	246680			39714	5583	26823	26923	40210	40210					-0.01303133936426093
STSDKIFFH	9	Unmodified	_STSDKIFFH_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2697143554688	2	541.269281	1080.52401	1.3417	0.00072621	-0.93475	-0.00050595	0.40693	0.00022026	541.268870732656	30.912	0.23344	30.912	30.827	31.061	0					8	5	2	0	0	0	0.047855	1	11615	11615		90.37	37.018	1	91598			39715	5583	26823	26923	40211	40211					-0.01303133936426093
STSDKIFFH	9	Unmodified	_STSDKIFFH_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.2703247070312	2	541.269281	1080.52401	0.64681	0.0003501	0.59733	0.00032332	1.2441	0.00067342	541.2696919184523	30.849	0.21447	30.849	30.78	30.995	0					9	4	3	0	0	0	0.035106	1	11476	11476		98.629	34.422	1	195190			39716	5583	26823	26923	40212	40212					-0.01303133936426093
STSDKIFFH	9	Unmodified	_STSDKIFFH_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.1819763183594	3	361.181946	1080.52401	-0.07005	-2.5301E-05	0.39763	0.00014362	0.32758	0.00011832	361.18204841227185	30.894	0.26262	30.894	30.78	31.043	0					10	5	3	0	0	0	0.30951	1	11477	11477		49.442	6.5773	1	168580			39717	5583	26823	26923	40213	40213					-0.01303133936426093
STSDPIMTAR	10	Unmodified	_STSDPIMTAR_					0	0	0		ENSG00000176771|ENST00000409261|NCKAP5;nc|ENSG00000176771|O14513-2|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7637329101562	2	539.763506	1077.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.208	1	27.208	26.708	27.708	0								0	0	0	0.38475	1	9831	9831		35.152	21.015	1				39718	6623	26824	26924	40214	40214					-0.02319699022086752
STSDSVRLK	9	Unmodified	_STSDSVRLK_					0	0	0		ENST00000522397.5_1_8:54883012-54934915:-|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.77197265625	2	496.772188	991.529823	-0.059438	-2.9527E-05	-0.28427	-0.00014122	-0.34371	-0.00017074	496.7720469584118	17.839	0.12256	17.839	17.757	17.88	0					6	3	2	0	0	0	0.016683	1	4340	4340		127.46	31.271	1	435100			39719	7213	26825	26925	40215	40215					0.03371964575228503
STSDSVRLK	9	Unmodified	_STSDSVRLK_					0	0	0		ENST00000522397.5_1_8:54883012-54934915:-|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.77197265625	2	496.772188	991.529823	-0.3312	-0.00016453	-0.12682	-6.2999E-05	-0.45802	-0.00022753	496.7720745053906	18.167	0.18648	18.167	18.067	18.254	0					11	4	3	0	0	0	0.016683	1	5271	5271		127.46	39.707	1	2437800			39720	7213	26825	26925	40216	40216					0.03371964575228503
STSDSVRLK	9	Unmodified	_STSDSVRLK_					0	0	0		ENST00000522397.5_1_8:54883012-54934915:-|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7721252441406	2	496.772188	991.529823	-1.4096	-0.00070026	1.0968	0.00054484	-0.31288	-0.00015543	496.7727511239383	17.863	0.12795	17.863	17.782	17.909	0					6	3	2	0	0	0	0.0406	1	4570	4570		98.629	32.2	1	329070			39721	7213	26825	26925	40217	40217					0.03371964575228503
STSDSVRLK	9	Unmodified	_STSDSVRLK_					0	0	0		ENST00000522397.5_1_8:54883012-54934915:-|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.77215576171875	2	496.772188	991.529823	-0.76027	-0.00037768	1.1159	0.00055436	0.35566	0.00017668	496.7727224800366	18.13	0.16818	18.13	18.022	18.19	0					10	3	4	0	0	0	0.0059092	1	5497	5497		154.12	41.707	1	2110900			39722	7213	26825	26925	40218	40218					0.03371964575228503
STSEKINK	8	Unmodified	_STSEKINK_					0	0	0		ENSG00000187754|ENST00000298181|SSX7	ENSG00000187754|ENST00000298181|SSX7	ENSG00000187754|ENST00000298181|SSX7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.747802734375	2	453.748182	905.481811	0.026847	1.2182E-05	-0.85086	-0.00038608	-0.82402	-0.0003739	453.7477897882379	17.192	0.22044	17.192	17.128	17.348	0					10	6	2	0	0	0	0.2498	1	4231	4231		101.6	13.904	1	574290			39723	7216	26826	26926	40219	40219					0.025288906551850232
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2534484863281	2	504.253828	1006.4931	-0.062207	-3.1368E-05	0.25653	0.00012936	0.19432	9.7988E-05	504.25395227360906	16.473	0.13524	16.473	16.403	16.538	0					13	4	4	0	0	0	0.011389	1	3746	3746		138.06	55.822	1	1071100			39724	760	26827	26927	40220	40220					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.253662109375	2	504.253828	1006.4931	0.77292	0.00038975	0.067348	3.3961E-05	0.84027	0.00042371	504.2541522245832	16.744	0.69551	16.744	16.662	17.357	0					57	17	6	0	0	0	5.5375E-08	1	4589	4589		209.21	78.179	1	38007000			39725	760	26827	26927	40221	40221					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2534484863281	2	504.253828	1006.4931	-0.056866	-2.8675E-05	-0.053343	-2.6898E-05	-0.11021	-5.5573E-05	504.2538356182369	16.776	0.24969	16.776	16.691	16.94	0					19	6	4	0	0	0	0.0015666	1	4602	4602		177.3	60.401	1	4258700			39726	760	26827	26927	40222	40222					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.25335693359375	2	504.253828	1006.4931	-0.83055	-0.00041881	1.5318	0.00077241	0.70125	0.00035361	504.25475858949136	16.474	0.88748	16.474	16.397	17.284	0					69	31	5	0	0	0	5.863E-10	2	3949	3949;4107		223.32	79.434	1	25152000			39727	760	26827	26927	40223;40224	40223					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.25372314453125	2	504.253828	1006.4931	0.11981	6.0416E-05	0.5777	0.00029131	0.69752	0.00035172	504.254188867786	16.519	0.53625	16.519	16.442	16.978	0					43	15	5	0	0	0	5.2046E-05	2	3927	3927;4091		195.57	78.669	1	20785000			39728	760	26827	26927	40225;40226	40225					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.25360107421875	2	504.253828	1006.4931	1.2032	0.00060673	-0.52758	-0.00026603	0.67564	0.00034069	504.2536047711778	16.689	0.76122	16.689	16.532	17.293	0					54	15	5	0	0	0	5.5375E-08	2	4657	4657;4853		209.21	78.179	1	94571000			39729	760	26827	26927	40227;40228	40227					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2431640625	2	504.253828	1006.4931	2.9315	0.0014782	-3.1197	-0.0015731	-0.1882	-9.4903E-05	504.2523162502275	16.707	1.1001	16.707	16.617	17.717	0					51	22	5	0	0	0	0.00022968	2	4651	4651;4672		190.62	60.94	1	53864000			39730	760	26827	26927	40229;40230	40229					-0.009883320413450747
STSERTLLK	9	Unmodified	_STSERTLLK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7960205078125	2	517.795663	1033.57677	1.5402	0.0007975	-1.1652	-0.00060335	0.37494	0.00019414	517.7951604866981	20.17	0.21724	20.17	20.062	20.28	0					8	4	3	0	0	0	0.12278	1	6508	6508		74.165	4.5374	1	878250			39731	1181	26828	26928	40231	40231					0.06132824126370906
STSFGVPNAN	10	Unmodified	_STSFGVPNAN_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000460658.5_1_22:31492537-31495228:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2354431152344	2	497.235439	992.456324	0.78062	0.00038815	-1.0764	-0.00053525	-0.29582	-0.00014709	497.2349431982104	26.87	0.45879	26.87	26.71	27.169	0					18	9	3	0	0	0	0.38194	1	9705	9705		58.23	11.773	1	1059700			39732	6993	26829	26929	40232	40232					-0.04020583867247751
STSFISSSK	9	Unmodified	_STSFISSSK_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2397766113281	2	472.24019	942.465826	-0.023512	-1.1103E-05	-1.5988	-0.00075503	-1.6223	-0.00076613	472.2393869726212	23.185	0.20135	23.185	23.107	23.309	0					8	5	2	0	0	0	0.42902	1	6682	6682		39.253	8.7492	1	100600			39733	5318	26830	26930	40233	40233					-0.007708155816999351
STSFISSSK	9	Unmodified	_STSFISSSK_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.239990234375	2	472.24019	942.465826	0.20823	9.8334E-05	-1.7208	-0.00081263	-1.5126	-0.0007143	472.2394399500536	23.53	0.30677	23.53	23.354	23.661	0					13	7	2	0	0	0	0.032383	1	7814	7814		106.68	45.711	1	678390			39734	5318	26830	26930	40234	40234					-0.007708155816999351
STSFISSSK	9	Unmodified	_STSFISSSK_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2397766113281	2	472.24019	942.465826	0.61483	0.00029035	-1.6195	-0.00076479	-1.0047	-0.00047444	472.239276346898	23.472	0.3659	23.472	23.268	23.634	0					19	7	4	0	0	0	0.035062	1	7955	7955		104.06	32.761	1	722830			39735	5318	26830	26930	40235	40235					-0.007708155816999351
STSFLEKFK	9	Unmodified	_STSFLEKFK_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.8658447265625	3	362.865847	1085.57571	-0.076775	-2.7859E-05	-0.2035	-7.3845E-05	-0.28028	-0.0001017	362.8657823249445	34.939	0.3154	34.939	34.88	35.196	0					17	6	4	0	0	0	0.51817	1	13452	13452		37.812	0	1	545270			39736	11779	26831	26931	40236	40236					0.03634609757477847
STSGAISDK	9	Unmodified	_STSGAISDK_					0	0	0		nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2	nc|ENSG00000122512|P54278-3|PMS2	nc|ENSG00000122512|P54278-3|PMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2164001464844	2	433.216714	864.418876	0.7224	0.00031296	-1.0698	-0.00046346	-0.34741	-0.00015051	433.2162224843558	15.333	0.26115	15.333	15.201	15.462	0					9	6	2	0	0	0	0.18416	1	3929	3929		63.534	12.198	1	282930			39737	3269	26832	26932	40237	40237					-0.018756751328623977
STSGAISDK	9	Unmodified	_STSGAISDK_					0	0	0		nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2	nc|ENSG00000122512|P54278-3|PMS2	nc|ENSG00000122512|P54278-3|PMS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.21661376953125	2	433.216714	864.418876	0.8741	0.00037867	-1.0077	-0.00043654	-0.13356	-5.7862E-05	433.21620036468477	15.255	0.16877	15.255	15.195	15.364	0					9	3	3	0	0	0	0.070005	1	3994	3994		88.177	13.922	1	616600			39738	3269	26832	26932	40238	40238					-0.018756751328623977
STSGGCNLK	9	Unmodified	_STSGGCNLK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.70562744140625	2	433.70546	865.396366	0.12737	5.524E-05	-0.084714	-3.6741E-05	0.042653	1.8499E-05	433.7054238789496	16.719	0.17653	16.719	16.632	16.809	0					7	4	2	0	0	0	0.22377	1	4597	4597		58.782	8.7574	1	139660			39739	7382	26833	26933	40239	40239					-0.04171597802121596
STSGGCNLK	9	Unmodified	_STSGGCNLK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.70526123046875	2	433.70546	865.396366	-0.45605	-0.00019779	-0.50786	-0.00022026	-0.96391	-0.00041805	433.7055274324195	16.638	0.25525	16.638	16.58	16.835	0					10	5	3	0	0	0	0.30951	1	4805	4805		49.442	1.5259	1	473020			39740	7382	26833	26933	40240	40240					-0.04171597802121596
STSGGCNLK	9	Unmodified	_STSGGCNLK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.7049560546875	2	433.70546	865.396366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.477	1	16.477	15.977	16.977	0								0	0	0	0.24724	1	3915	3915		44.117	8.4985	1				39741	7382	26833	26933	40241	40241					-0.04171597802121596
STSGGCNLK	9	Carbamidomethyl (C)	_STSGGC(Carbamidomethyl (C))NLK_	STSGGC(1)NLK		STSGGC(120)NLK		0	1	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2157897949219	2	462.216192	922.41783	0.721	0.00033326	-1.729	-0.00079918	-1.008	-0.00046592	462.2153113955562	14.885	0.21377	14.885	14.78	14.994	0					6	4	2	0	0	0	0.021961	1	3974	3974		118.74	44.768	1	851540			39742	7382	26833	26934	40242	40242	311				-0.046482127734066125
STSGGKRQR	9	Unmodified	_STSGGKRQR_					0	0	0			REV__ENSG00000143815|ENST00000272163|LBR	REV__ENSG00000143815|ENST00000272163|LBR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7691345214844	2	488.767771	975.52099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.185	1	15.185	14.685	15.685	0								0	0	0	0.21054	1	3254	3254		49.442	5.0644	1		+		39743	15208	26834	26935	40243	40243					0.032250357294287824
STSGQIRQK	9	Unmodified	_STSGQIRQK_					0	0	0		DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant;ENSG00000077044|ENST00000264057|DGKD	DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant	DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.77801513671875	2	502.777805	1003.54106	-0.068428	-3.4404E-05	-0.24923	-0.00012531	-0.31766	-0.00015971	502.7777857419022	12.834	0.14278	12.834	12.785	12.928	0					9	4	3	0	0	0	0.098791	1	2802	2802		79.713	15.505	1	326620			39744	774	26835	26936	40244	40244					0.0394278666936998
STSGTVINK	9	Unmodified	_STSGTVINK_					0	0	0		CHFR|p.L97Tfs*14|1|0.63|ENSG00000072609|chr12:132872338-132872339|AA/-|frameshift_variant;ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	CHFR|p.L97Tfs*14|1|0.63|ENSG00000072609|chr12:132872338-132872339|AA/-|frameshift_variant	CHFR|p.L97Tfs*14|1|0.63|ENSG00000072609|chr12:132872338-132872339|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.74774169921875	2	453.748182	905.481811	-0.0015555	-7.0583E-07	-0.18665	-8.469E-05	-0.1882	-8.5396E-05	453.74809034461344	17.144	0.2354	17.144	17.073	17.308	0					14	7	3	0	0	0	0.01768	1	4027	4027		125.81	1.2198	1	349690			39745	510	26836	26937	40245	40245					0.025288906551850232
STSGTVINK	9	Unmodified	_STSGTVINK_					0	0	0		CHFR|p.L97Tfs*14|1|0.63|ENSG00000072609|chr12:132872338-132872339|AA/-|frameshift_variant;ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	CHFR|p.L97Tfs*14|1|0.63|ENSG00000072609|chr12:132872338-132872339|AA/-|frameshift_variant	CHFR|p.L97Tfs*14|1|0.63|ENSG00000072609|chr12:132872338-132872339|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.7477722167969	2	453.748182	905.481811	-1.1902	-0.00054006	0.36431	0.0001653	-0.82592	-0.00037476	453.74834664300425	17.212	0.23418	17.212	17.139	17.373	0					16	7	3	0	0	0	0.0040894	1	4261	4261		162.25	27.442	1	713950			39746	510	26836	26937	40246	40246					0.025288906551850232
STSHVSISK	9	Unmodified	_STSHVSISK_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2532043457031	2	473.253631	944.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.261	1	16.261	15.761	16.761	0								0	0	0	0.0016356	1	4611	4611		123.21	27.393	1				39747	7825	26837	26938	40247	40247					0.01824293029483215
STSHVSISK	9	Unmodified	_STSHVSISK_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2530822753906	2	473.253631	944.49271	-0.58009	-0.00027453	-0.43026	-0.00020362	-1.0103	-0.00047815	473.25339286781315	16.208	0.11834	16.208	16.149	16.267	0					4	2	2	0	0	0	0.017421	1	4450	4450		126.24	38.066	1	753500			39748	7825	26837	26938	40248	40248					0.01824293029483215
STSHVSVSK	9	Unmodified	_STSHVSVSK_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.246337890625	2	466.245806	930.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.054	1	14.054	13.554	14.554	0								0	0	0	0.018912	1	2838	2838		101.25	30.436	1				39749	7825	26838	26939	40249	40249					0.009040065124395369
STSHVSVSK	9	Unmodified	_STSHVSVSK_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.24542236328125	2	466.245806	930.47706	0.22485	0.00010483	-0.64485	-0.00030066	-0.42001	-0.00019583	466.2453859432759	14.358	0.095797	14.358	14.311	14.406	0					6	2	3	0	0	0	0.019258	1	3488	3488		123.21	24.626	1	306850			39750	7825	26838	26939	40250	40250					0.009040065124395369
STSHVSVSK	9	Unmodified	_STSHVSVSK_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.24560546875	2	466.245806	930.47706	-0.13503	-6.2959E-05	-0.47417	-0.00022108	-0.6092	-0.00028404	466.24561577284567	14.292	0.15906	14.292	14.234	14.393	0					8	3	3	0	0	0	0.012936	1	3684	3684		134.77	33.513	1	584570			39751	7825	26838	26939	40251	40251					0.009040065124395369
STSHVSVSK	9	Unmodified	_STSHVSVSK_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.246337890625	2	466.245806	930.47706	-0.18015	-8.3994E-05	0.31686	0.00014773	0.13671	6.3739E-05	466.2461460237178	14.095	0.074358	14.095	14.035	14.109	0					5	3	2	0	0	0	0.14578	1	2932	2932		68.846	10.616	1	39423			39752	7825	26838	26939	40252	40252					0.009040065124395369
STSHVSVSK	9	Unmodified	_STSHVSVSK_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2453918457031	2	466.245806	930.47706	-0.49837	-0.00023236	0.89477	0.00041718	0.3964	0.00018482	466.2461261228193	14.316	0.16959	14.316	14.205	14.375	0					7	3	3	0	0	0	0.026848	1	3523	3523		112.11	7.3607	1	282620			39753	7825	26838	26939	40253	40253					0.009040065124395369
STSIGAGVL	9	Unmodified	_STSIGAGVL_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-4|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-4|SIRT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.7270202636719	2	402.726718	803.438883	0.66449	0.00026761	-0.62245	-0.00025068	0.042044	1.6932E-05	402.72646543622716	23.94	0.14343	23.94	23.846	23.989	0					6	3	2	0	0	0	0.16524	1	7985	7985		65.803	11.027	1	78538	+		39754	13155	26839	26940	40254	40254					0.02930120597761743
STSKIVSSFK	10	Unmodified	_STSKIVSSFK_					0	0	0		nc|ENSG00000047056|Q9Y2I8-3|WDR37;ENSG00000047056|ENST00000263150|WDR37;nc|ENSG00000047056|Q9Y2I8-2|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.306396484375	2	542.305864	1082.59717	-0.1603	-8.6932E-05	0.34809	0.00018877	0.18779	0.00010184	542.3065358031259	23.639	0.11658	23.639	23.584	23.701	0					6	4	2	0	0	0	0.34979	1	7132	7132		61.765	18.9	1	96693			39755	1214	26840	26941	40255	40255					0.05917994786182135
STSKIVSSFK	10	Unmodified	_STSKIVSSFK_					0	0	0		nc|ENSG00000047056|Q9Y2I8-3|WDR37;ENSG00000047056|ENST00000263150|WDR37;nc|ENSG00000047056|Q9Y2I8-2|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.3063354492188	2	542.305864	1082.59717	0.31594	0.00017134	0.5502	0.00029838	0.86614	0.00046971	542.3062121627678	23.838	0.21915	23.838	23.728	23.947	0					9	4	3	0	0	0	0.041183	1	8277	8277		112.3	29.545	1	444170			39756	1214	26840	26941	40256	40256					0.05917994786182135
STSLLGALQS	10	Unmodified	_STSLLGALQS_					0	0	0		nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54;nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-4|VPS54	nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7693786621094	2	488.769114	975.523675	0.51985	0.00025409	0.19084	9.3276E-05	0.71069	0.00034736	488.76896499869645	23.144	0.14127	23.144	23.047	23.188	0					6	3	2	0	0	0	0.52275	1	7006	7006		42.864	0	1	60227			39757	4591	26841	26942	40257	40257					0.034934463437252816
STSLLGQKK	9	Unmodified	_STSLLGQKK_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.287353515625	2	481.287474	960.560395	0.088759	4.2719E-05	-0.43861	-0.0002111	-0.34985	-0.00016838	481.2873670323701	18.5	0.060831	18.5	18.442	18.503	0					4	2	2	0	0	0	0.087861	1	4604	4604		82.241	7.9855	1	188910			39758	2916	26842	26943	40258	40258					0.07853742960287491
STSLLGQKK	9	Unmodified	_STSLLGQKK_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2872619628906	2	481.287474	960.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.593	1	18.593	18.093	19.093	0								0	0	0	0.091069	1	4883	4883		74.255	5.4682	1				39759	2916	26842	26943	40259	40259					0.07853742960287491
STSPFGAGCLQ	11	Unmodified	_STSPFGAGCLQ_					0	0	0			REV__BACE1|p.L222Sfs*14|1|0.29|ENSG00000186318|chr11:117293912-117293912|G/-|frameshift_variant	REV__BACE1|p.L222Sfs*14|1|0.29|ENSG00000186318|chr11:117293912-117293912|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2468872070312	2	534.244949	1066.47534	1.7726	0.00094701	1.3274	0.00070913	3.1	0.0016561	534.2458743733706	15.679	0.41211	15.679	15.567	15.979	0					18	8	5	0	0	0	0.23884	1	4325	4325		69.628	14.123	1	1292400	+		39760	12271	26843	26944	40260	40260					-0.05523370567834718
STSPFGAGCLQ	11	Unmodified	_STSPFGAGCLQ_					0	0	0			REV__BACE1|p.L222Sfs*14|1|0.29|ENSG00000186318|chr11:117293912-117293912|G/-|frameshift_variant	REV__BACE1|p.L222Sfs*14|1|0.29|ENSG00000186318|chr11:117293912-117293912|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2469482421875	2	534.244949	1066.47534	1.834	0.00097981	1.1718	0.00062604	3.0058	0.0016058	534.2459542514341	15.639	0.31651	15.639	15.481	15.797	0					16	6	4	0	0	0	0.23884	1	4158	4158		69.628	0.8408	1	1829100	+		39761	12271	26843	26944	40261	40261					-0.05523370567834718
STSPPPEKS	9	Unmodified	_STSPPPEKS_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.23199462890625	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.239	1	47.239	46.739	47.739	0								0	0	0	0.38123	1	18877	18877		16.473	0.83693	1				39762	1431	26844	26945	40262	40262					-0.01691102098754982
STSPSQPRK	9	Unmodified	_STSPSQPRK_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP;ENST00000573672.1_1_16:3817649-3820675:-|nuORF	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.26397705078125	2	494.26453	986.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.165	1	12.165	11.665	12.665	0								0	0	0	0.11184	1	2670	2670		68.787	12.066	1				39763	691	26845	26946	40263	40263					0.0207109777804817
STSPSVALSK	10	Unmodified	_STSPSVALSK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2702331542969	2	488.769114	975.523675	0.41723	0.00020393	-0.77421	-0.00037841	-0.35699	-0.00017449	488.7688472122783	23.377	0.19655	23.377	23.277	23.473	0					9	4	3	0	0	0	0.08194	1	7722	7722		98.582	5.4388	1	392070			39764	292	26846	26947	40264	40264					0.03493446343713913
STSPSVALSK	10	Unmodified	_STSPSVALSK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7690124511719	2	488.769114	975.523675	0.76668	0.00037473	-1.0648	-0.00052043	-0.29809	-0.0001457	488.7685412670707	23.36	0.27506	23.36	23.263	23.538	0					13	6	3	0	0	0	0.05785	1	7733	7733		106.68	13.085	1	647150			39765	292	26846	26947	40265	40265					0.03493446343713913
STSPSVALSK	10	Unmodified	_STSPSVALSK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7690124511719	2	488.769114	975.523675	-0.077406	-3.7834E-05	-0.28483	-0.00013922	-0.36224	-0.00017705	488.76891997221435	23.316	0.26618	23.316	23.162	23.429	0					10	5	3	0	0	0	0.041742	1	8004	8004		112.11	13.525	1	617750			39766	292	26846	26947	40266	40266					0.03493446343713913
STSPTNYVK	9	Unmodified	_STSPTNYVK_					0	0	0			REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2	REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2509765625	2	498.753464	995.492375	0.68277	0.00034053	-2.1457	-0.0010702	-1.4629	-0.00072964	498.75305424774206	26.129	0.58988	26.129	25.957	26.547	0					41	14	5	0	0	0	0.22377	1	8944	8944		58.782	3.2778	1	20344000	+		39767	21042	26847	26948	40267	40267					-0.0055512669038080276
STSPTSTPYLL	11	Unmodified	_STSPTSTPYLL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.53643798828125	3	389.536166	1165.58667	0.86983	0.00033883	-0.056749	-2.2106E-05	0.81308	0.00031673	389.536117382893	20.617	0.38161	20.617	20.522	20.904	0					17	8	3	0	0	0	0.72624	1	6437	6437		25.126	0	1	1284300			39768	5476	26848	26949	40268	40268					0.010499673411004551
STSQLYTVK	9	Unmodified	_STSQLYTVK_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.776611328125	2	513.776939	1025.53933	1.1249	0.00057795	-1.7587	-0.00090357	-0.63378	-0.00032562	513.7762783769368	26.167	0.25667	26.167	26.083	26.34	0					12	6	3	0	0	0	0.3269	1	9003	9003		47.96	8.7067	1	599450			39769	4584	26849	26950	40269	40269					0.027577328607549134
STSQLYTVK	9	Unmodified	_STSQLYTVK_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7769165039062	2	513.776939	1025.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.136	1	26.136	25.636	26.636	0								0	0	0	0.095784	1	9196	9196		72.879	10.772	1				39770	4584	26849	26950	40270	40270					0.027577328607549134
STSQMTSHK	9	Unmodified	_STSQMTSHK_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7346496582031	2	503.734748	1005.45494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.735	1	12.735	12.235	13.235	0								0	0	0	0.024201	1	2938	2938		98.629	21.855	1				39771	3684	26850	26951	40271	40271					-0.047565412276412644
STSQNIILIT	10	Unmodified	_STSQNIILIT_					0	0	0			REV__ENST00000502346.1_1_5:82352385-82352481:-|nuORF	REV__ENST00000502346.1_1_5:82352385-82352481:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.8756408691406	3	363.876523	1088.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.419	1	12.419	11.919	12.919	0								0	0	0	0.40862	1	2789	2789		26.063	1.5442	1		+		39772	19810	26851	26952	40272	40272					0.06697977440626346
STSQNTVLK	9	Unmodified	_STSQNTVLK_					0	0	0			REV__CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	REV__CENPJ|p.L906*|1|0.48|ENSG00000151849|chr13:24904034-24904034|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2720031738281	2	489.266739	976.518924	2.6239	0.0012838	-2.9058	-0.0014217	-0.28192	-0.00013793	489.265395613302	13.043	0.65819	13.043	12.947	13.605	0					35	14	6	0	0	0	0.048471	1	3137	3137		95.815	0	1	15227000	+		39773	12422	26852	26953	40273	40273					0.029725622009436847
STSQQHLTK	9	Unmodified	_STSQQHLTK_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.26953125	2	515.269813	1028.52507	0.18314	9.4364E-05	0.54877	0.00028276	0.73191	0.00037713	515.2699898448592	13.126	0.090612	13.126	13.096	13.187	0					9	5	3	0	0	0	0.19952	1	2558	2558		61.691	11.667	1	51628			39774	2657	26853	26954	40274	40274					0.011950804324442288
STSQQHLTK	9	Unmodified	_STSQQHLTK_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.27001953125	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.422	1	13.422	12.922	13.922	0								0	0	0	2.6836E-06	1	3051	3051		209.19	87.019	1				39775	2657	26853	26954	40275	40275					0.011950804324442288
STSQQHLTK	9	Unmodified	_STSQQHLTK_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2708740234375	2	515.269813	1028.52507	-1.5666	-0.00080723	3.7794	0.0019474	2.2128	0.0011402	515.271456985372	13.144	0.071564	13.144	13.11	13.182	0					6	4	2	0	0	0	0.11411	1	2622	2622		76.17	15.876	1	56536			39776	2657	26853	26954	40276	40276					0.011950804324442288
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7775268554688	2	537.776939	1073.53933	1.4347	0.00077157	-0.43854	-0.00023584	0.99621	0.00053574	537.7766512643522	28.756	0.38821	28.756	28.643	29.031	0					39	14	4	0	0	0	0.017421	1	8975	8975		126.24	65.271	1	2214400			39777	940	26854	26955	40277	40277					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7772827148438	2	537.776939	1073.53933	2.0714	0.001114	-1.6834	-0.00090528	0.38805	0.00020869	537.7758430184495	29.009	0.89916	29.009	28.846	29.745	0					65	22	6	0	0	0	0.00072198	1	10289	10289		185.72	100.56	1	14123000			39778	940	26854	26955	40278	40278					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7781372070312	2	537.776939	1073.53933	1.894	0.0010185	-0.91502	-0.00049208	0.97894	0.00052645	537.7763004181836	29.014	0.86093	29.014	28.661	29.522	0					51	18	5	0	0	0	1.4602E-05	1	10683	10683		204.42	103.17	1	11413000			39779	940	26854	26955	40279	40279					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7772827148438	2	537.776939	1073.53933	1.0195	0.00054824	-0.089345	-4.8048E-05	0.93011	0.00050019	537.7767897360469	28.798	0.35023	28.798	28.675	29.026	0					27	8	4	0	0	0	1.4602E-05	1	9596	9596		204.42	111.28	1	2256900			39780	940	26854	26955	40280	40280					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2785034179688	2	537.776939	1073.53933	-1.4402	-0.0007745	2.5832	0.0013892	1.1431	0.00061471	537.7781185542328	28.792	0.26764	28.792	28.699	28.967	0					16	6	4	0	0	0	0.28504	1	9592	9592		51.528	8.6635	1	239360			39781	940	26854	26955	40281	40281					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.777587890625	2	537.776939	1073.53933	0.69531	0.00037392	0.20861	0.00011218	0.90391	0.0004861	537.7769411495692	28.967	0.61491	28.967	28.809	29.424	0					44	12	5	0	0	0	1.4602E-05	1	10520	10520		204.42	108.61	1	7308400			39782	940	26854	26955	40282	40282					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7772216796875	2	537.776939	1073.53933	1.9992	0.0010751	-1.4919	-0.00080231	0.50732	0.00027282	537.7759639567006	28.948	1.1546	28.948	28.741	29.896	0					55	23	6	0	0	0	1.4602E-05	1	10534	10534		204.42	105.79	1	16084000			39783	940	26854	26955	40283	40283					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.77734375	2	537.776939	1073.53933	3.3533	0.0018033	-2.4761	-0.0013316	0.87724	0.00047176	537.7754431828688	28.936	0.56519	28.936	28.826	29.392	0					28	11	4	0	0	0	0.0023831	1	10552	10552		172.25	79.053	1	1794600			39784	940	26854	26955	40284	40284					0.005497328607589225
STSRDRRV	8	Unmodified	_STSRDRRV_					0	0	0			REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.768798828125	2	488.767771	975.52099	3.5083	0.0017148	-0.30082	-0.00014703	3.2075	0.0015677	488.7675954072208	23.13	0.15994	23.13	23.006	23.166	0					9	5	2	0	0	0	0.72381	1	6890	6890		30.504	30.504	1	62847	+		39785	16472	26855	26956	40285	40285					0.032250357294287824
STSRLRRWW	9	Unmodified	_STSRLRRWW_					0	0	0		ENST00000368608.3_1_6:116599484-116599676:-|nuORF	ENST00000368608.3_1_6:116599484-116599676:-|nuORF	ENST00000368608.3_1_6:116599484-116599676:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.5625915527344	3	416.563384	1246.66832	0.067416	2.8083E-05	-1.4756	-0.0006147	-1.4082	-0.00058662	416.5626392326956	21.876	0.11465	21.876	21.776	21.89	0					6	2	3	0	0	0	0.61124	1	7313	7313		26.693	7.4302	1	279240			39786	8929	26856	26957	40286	40286					0.05485552334221211
STSRRSMP	8	Unmodified	_STSRRSMP_					0	0	0		ENST00000593163.5_1_19:33991848-34002015:-|nuORF	ENST00000593163.5_1_19:33991848-34002015:-|nuORF	ENST00000593163.5_1_19:33991848-34002015:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2347412109375	2	461.232176	920.449799	4.2134	0.0019434	2.3125	0.0010666	6.5259	0.00301	461.23332476663415	17.773	0.18868	17.773	17.666	17.855	0					11	5	3	0	0	0	0.60719	1	4502	4502		47.916	3.7988	1	151380			39787	10982	26857	26958	40287	40287					-0.013608002995965762
STSSHCLLY	9	Carbamidomethyl (C)	_STSSHC(Carbamidomethyl (C))LLY_	STSSHC(1)LLY		STSSHC(48)LLY		0	1	0		ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant;ENSG00000236287|ENST00000413761|ZBED5	ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant	ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.746337890625	2	534.244949	1066.47534	0.50752	0.00027114	0.15554	8.3099E-05	0.66306	0.00035424	534.2450765122267	31.139	0.16783	31.139	31.036	31.204	0					12	6	2	0	0	0	0.32741	1	9972	9972		47.916	15.961	1	192960			39788	7907	26858	26959	40288	40288	344				-0.05523370567834718
STSSHCLLY	9	Carbamidomethyl (C)	_STSSHC(Carbamidomethyl (C))LLY_	STSSHC(1)LLY		STSSHC(41)LLY		0	1	0		ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant;ENSG00000236287|ENST00000413761|ZBED5	ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant	ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.2453002929688	2	534.244949	1066.47534	0.15734	8.4056E-05	0.25853	0.00013812	0.41587	0.00022218	534.2451846678164	31.41	0.37413	31.41	31.28	31.654	0					24	9	4	0	0	0	0.41354	1	11420	11420		40.573	8.6178	1	861250			39789	7907	26858	26959	40289	40289	344				-0.05523370567834718
STSSHCLLY	9	Unmodified	_STSSHCLLY_					0	0	0		ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant;ENSG00000236287|ENST00000413761|ZBED5	ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant	ZBED5|p.N390Mfs*3|1|0.09|ENSG00000236287|chr11:10853777-10853777|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.73370361328125	2	505.734217	1009.45388	-0.074672	-3.7764E-05	-0.23076	-0.0001167	-0.30543	-0.00015447	505.7340064636203	33.6	0.37284	33.6	33.521	33.894	0					24	14	2	0	0	0	0.41354	1	10943	10943		40.573	0	1	67232			39790	7907	26858	26960	40290	40290					-0.05046755596549701
STSSKSPPR	9	Unmodified	_STSSKSPPR_					0	0	0		ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7509460449219	2	473.751256	945.487959	0.60264	0.0002855	-0.91405	-0.00043303	-0.31141	-0.00014753	473.75089698995555	11.791	0.21862	11.791	11.65	11.868	0					15	6	3	0	0	0	0.085655	1	2475	2475		82.75	7.7072	1	388130			39791	8059	26859	26961	40291	40291					0.013034088867129867
STSSLFNLQ	9	Unmodified	_STSSLFNLQ_					0	0	0		nc|ENSG00000108375|Q68DV7-3|RNF43;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant	nc|ENSG00000108375|Q68DV7-3|RNF43	nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.25048828125	2	498.753464	995.492375	-1.0803	-0.00053879	-0.49414	-0.00024645	-1.5744	-0.00078524	498.7539130015103	25.892	0.30894	25.892	25.724	26.033	0					14	6	3	0	0	0	0.48389	1	8064	8064		34.173	0	1	770190			39792	525	26860	26962	40292	40292					-0.0055512669038080276
STSSLFNLQ	9	Unmodified	_STSSLFNLQ_					0	0	0		nc|ENSG00000108375|Q68DV7-3|RNF43;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant	nc|ENSG00000108375|Q68DV7-3|RNF43	nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2510681152344	2	498.753464	995.492375	1.0455	0.00052144	-2.8207	-0.0014068	-1.7752	-0.00088537	498.7529525415538	26.078	0.95377	26.078	25.498	26.451	0					37	17	4	0	0	0	0.26904	1	9118	9118		53.351	0	1	12453000			39793	525	26860	26962	40293	40293					-0.0055512669038080276
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2401123046875	2	478.24019	954.465826	1.014	0.00048493	-0.98995	-0.00047343	0.024037	1.1495E-05	478.2396516307845	18.57	0.16697	18.57	18.511	18.678	0					17	6	3	0	0	0	0.085655	1	4630	4630		82.75	29.399	1	400120			39794	4172	26861	26963	40294	40294					-0.013228155817046172
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2402648925781	2	478.24019	954.465826	0.016878	8.0716E-06	-0.24244	-0.00011594	-0.22556	-0.00010787	478.23998936722637	18.589	0.32484	18.589	18.473	18.798	0					27	11	4	0	0	0	0.016683	1	4628	4628		127.46	48.011	1	2245100			39795	4172	26861	26963	40295	40295					-0.013228155817046172
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.23992919921875	2	478.24019	954.465826	0.42765	0.00020452	-0.48735	-0.00023307	-0.059703	-2.8553E-05	478.239894709617	18.9	0.52732	18.9	18.846	19.373	0					35	13	5	0	0	0	0.003936	1	5605	5605		163.15	66.961	1	15610000			39796	4172	26861	26963	40296	40296					-0.013228155817046172
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2403259277344	2	478.24019	954.465826	-0.0056448	-2.6996E-06	-0.50204	-0.0002401	-0.50769	-0.0002428	478.23991536666654	18.659	0.32146	18.659	18.551	18.872	0					23	8	4	0	0	0	0.02953	1	4895	4895		109.48	40.692	1	2185500			39797	4172	26861	26963	40297	40297					-0.013228155817046172
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2396545410156	2	478.24019	954.465826	-0.65325	-0.00031241	-0.18149	-8.6795E-05	-0.83474	-0.00039921	478.24007494401064	18.813	0.78996	18.813	18.669	19.459	0					42	16	5	0	0	0	0.0067848	1	5694	5694		150.36	54.171	1	22709000			39798	4172	26861	26963	40298	40298					-0.013228155817046172
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2402038574219	2	478.24019	954.465826	0.86369	0.00041305	-0.87323	-0.00041762	-0.0095414	-4.5631E-06	478.2398841134599	18.808	0.24363	18.808	18.702	18.946	0					13	5	3	0	0	0	0.02429	1	5706	5706		114.89	38.12	1	2161900			39799	4172	26861	26963	40299	40299					-0.013228155817046172
STSSSSPLR	9	Unmodified	_STSSSSPLR_					0	0	0		ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2355041503906	2	461.235439	920.456324	0.098634	4.5494E-05	-0.86833	-0.0004005	-0.76969	-0.00035501	461.23511905365103	17.736	0.22476	17.736	17.627	17.852	0					12	6	3	0	0	0	0.11898	1	4281	4281		75.043	10.836	1	240690			39800	8182	26862	26964	40300	40300					-0.007085838672310274
STSSSSPLR	9	Unmodified	_STSSSSPLR_					0	0	0		ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2352600097656	2	461.235439	920.456324	0.10889	5.0225E-05	-0.5995	-0.00027651	-0.49061	-0.00022629	461.2351496802004	18.058	0.20428	18.058	17.91	18.114	0					10	4	3	0	0	0	0.021961	1	5203	5203		118.74	20.114	1	198830			39801	8182	26862	26964	40301	40301					-0.007085838672310274
STSSSSPLR	9	Unmodified	_STSSSSPLR_					0	0	0		ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.235107421875	2	461.235439	920.456324	-0.15025	-6.9299E-05	-0.5829	-0.00026886	-0.73315	-0.00033816	461.2351971996938	18.013	0.4221	18.013	17.853	18.275	0					20	8	4	0	0	0	0.048471	1	5440	5440		95.815	10.654	1	1657300			39802	8182	26862	26964	40302	40302					-0.007085838672310274
STSSSSPLR	9	Unmodified	_STSSSSPLR_					0	0	0		ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2347106933594	2	461.235439	920.456324	-0.12129	-5.5945E-05	0.13731	6.3334E-05	0.016018	7.3882E-06	461.2353108236967	17.837	0.18501	17.837	17.706	17.891	0					10	4	3	0	0	0	0.078509	1	4506	4506		85.161	18.732	1	125540			39803	8182	26862	26964	40303	40303					-0.007085838672310274
STSSSSPLR	9	Unmodified	_STSSSSPLR_					0	0	0		ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2347106933594	2	461.235439	920.456324	-0.15165	-6.9945E-05	-0.46491	-0.00021443	-0.61655	-0.00028438	461.2350551524432	17.798	0.18652	17.798	17.689	17.876	0					10	4	3	0	0	0	0.1424	1	4540	4540		69.628	5.4204	1	126580			39804	8182	26862	26964	40304	40304					-0.007085838672310274
STSSSSPLR	9	Unmodified	_STSSSSPLR_					0	0	0		ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	ENST00000223023.4_1_7:123388889-123389093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2352294921875	2	461.235439	920.456324	-0.46043	-0.00021237	-0.2343	-0.00010807	-0.69473	-0.00032043	461.2353531811424	17.987	0.35574	17.987	17.834	18.19	0					18	7	4	0	0	0	0.012231	1	5284	5284		136.27	5.2367	1	1675900			39805	8182	26862	26964	40305	40305					-0.007085838672310274
STSSSSSGKK	10	Unmodified	_STSSSSSGKK_					0	0	0		ENST00000556758.1_1_14:100317215-100349650:+|nuORF;EML1|p.D325*|1|0.12|ENSG00000066629|chr14:99900996-99900997|-/T|frameshift_variant;EML1|p.Y396Lfs*12|1|0.06|ENSG00000066629|chr14:99909426-99909427|-/TAAG|frameshift_variant;ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENST00000556758.1_1_14:100317215-100349650:+|nuORF	ENST00000556758.1_1_14:100317215-100349650:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.239990234375	2	478.238178	954.461803	3.4542	0.0016519	0.40423	0.00019332	3.8584	0.0018452	478.23830484169326	18.58	0.28195	18.58	18.503	18.785	0					26	9	4	0	0	0	0.14151	1	4869	4869		88.177	88.177	1	2297800			39806	910	26863	26965	40306	40306					-0.01724905075411698
STSSTKRLK	9	Unmodified	_STSSTKRLK_					0	0	0		nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2976989746094	2	504.29583	1006.57711	2.9316	0.0014784	0.94508	0.0004766	3.8767	0.001955	504.2964107854567	18.795	1.7917	18.795	18.685	20.477	0					94	36	3	0	0	0	0.30951	1	5864	5864		49.442	1.5259	1	143420000			39807	5473	26864	26966	40307	40307					0.0740824384622556
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.247802734375	2	492.248646	982.482739	-0.16127	-7.9385E-05	-0.94389	-0.00046463	-1.1052	-0.00054401	492.24842584394725	28.754	0.28054	28.754	28.643	28.923	0					26	10	4	0	0	0	0.07136	1	8976	8976		87.696	23.489	1	644750			39808	10321	26865	26967	40308	40308					-0.009203542917589402
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2484130859375	2	492.248646	982.482739	0.79219	0.00038996	-1.9692	-0.00096933	-1.177	-0.00057937	492.2479872870802	29.009	0.40888	29.009	28.888	29.296	0					29	10	4	0	0	0	3.2654E-05	1	10306	10306		200.16	95.41	1	5429700			39809	10321	26865	26967	40309	40309					-0.009203542917589402
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.24859619140625	2	492.248646	982.482739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.784	1	28.784	28.284	29.284	0								0	0	0	0.014441	1	9313	9313		104.75	22.442	1				39810	10321	26865	26967	40310	40310					-0.009203542917589402
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2484130859375	2	492.248646	982.482739	-0.05736	-2.8235E-05	-1.0127	-0.00049849	-1.07	-0.00052673	492.2484307199324	29.028	0.34792	29.028	28.878	29.226	0					23	7	5	0	0	0	0.0073253	1	10669	10669		148.04	57.266	1	2413900			39811	10321	26865	26967	40311	40311					-0.009203542917589402
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2483825683594	2	492.248646	982.482739	0.42702	0.0002102	-1.2778	-0.00062902	-0.85082	-0.00041881	492.248179583464	28.772	0.26729	28.772	28.685	28.953	0					13	6	3	0	0	0	0.0012031	1	9604	9604		180.93	93.172	1	427340			39812	10321	26865	26967	40312	40312					-0.009203542917589402
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2489929199219	2	492.248646	982.482739	-0.03895	-1.9173E-05	-0.76669	-0.0003774	-0.80564	-0.00039657	492.2485443243765	28.798	0.31564	28.798	28.71	29.026	0					12	7	2	0	0	0	0.012915	1	9597	9597		134.81	58.037	1	743190			39813	10321	26865	26967	40313	40313					-0.009203542917589402
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.24835205078125	2	492.248646	982.482739	-0.5874	-0.00028914	-0.16942	-8.3395E-05	-0.75681	-0.00037254	492.24873690954365	28.967	0.41427	28.967	28.809	29.224	0					21	8	3	0	0	0	3.2654E-05	1	10542	10542		200.16	98.556	1	3783300			39814	10321	26865	26967	40314	40314					-0.009203542917589402
STSSVIMMK	9	Unmodified	_STSSVIMMK_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2486572265625	2	492.248646	982.482739	0.83808	0.00041254	-2.8068	-0.0013817	-1.9687	-0.00096911	492.2481835806834	28.95	0.61554	28.95	28.792	29.408	0					30	12	4	0	0	0	0.0040894	1	10558	10558		162.25	55.245	1	4965800			39815	10321	26865	26967	40315	40315					-0.009203542917589402
STSSVLKRK	9	Unmodified	_STSSVLKRK_					0	0	0		ENST00000531964.5_1_15:101812984-101817507:-|nuORF;ENST00000398226.7_1_15:101812984-101817622:-|nuORF;ENSG00000131871|ENST00000526049|SELENOS;ENST00000527833.5_1_15:101814613-101814733:-|nuORF	ENST00000531964.5_1_15:101812984-101817507:-|nuORF	ENST00000531964.5_1_15:101812984-101817507:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.3061218261719	2	503.306198	1004.59784	2.928	0.0014737	-3.1056	-0.0015631	-0.17757	-8.9372E-05	503.30465768698053	14.936	0.16711	14.936	14.828	14.995	0					5	3	2	0	0	0	0.35021	1	3841	3841		45.972	19.176	1	907000			39816	3747	26866	26968	40316	40316					0.09572834225912175
STSTISSSNN	10	Unmodified	_STSTISSSNN_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;TNRC6C|p.E657Rfs*3|1|0.32|ENSG00000078687|chr17:78051026-78051026|G/-|frameshift_variant;TNRC6C|p.K926Rfs*3|1|0.18|ENSG00000078687|chr17:78067919-78067919|A/-|frameshift_variant;TNRC6C|p.G923Dfs*6|2|0.46|ENSG00000078687|chr17:78067906-78067906|A/-|frameshift_variant;TNRC6C|p.N615Kfs*8|1|0.25|ENSG00000078687|chr17:78050898-78050899|-/A|frameshift_variant;TNRC6C|p.N615Mfs*45|3|0.36|ENSG00000078687|chr17:78050899-78050899|A/-|frameshift_variant	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.22711181640625	2	499.225268	996.435983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.352	1	37.352	36.852	37.852	0								0	0	0	0.40063	1	14155	14155		30.318	0.47618	1				39817	1605	26867	26969	40317	40317					-0.062377993177051394
STSTLDLGK	9	Unmodified	_STSTLDLGK_					0	0	0		nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4	nc|ENSG00000167113|Q9Y3A0-2|COQ4	nc|ENSG00000167113|Q9Y3A0-2|COQ4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2477111816406	2	461.248015	920.481476	-0.15031	-6.9331E-05	-0.74594	-0.00034407	-0.89626	-0.0004134	461.24734138123375	25.712	0.26502	25.712	25.552	25.817	0					8	4	2	0	0	0	0.16806	1	9147	9147		65.465	10.689	1	162260			39818	5970	26868	26970	40318	40318					0.018054709353350518
STSTSIKVK	9	Unmodified	_STSTSIKVK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49;nc|nan|Q9BVC5-2|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.77899169921875	2	475.779482	949.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.73	1	16.73	16.23	17.23	0								0	0	0	0.29356	1	3864	3864		36.447	5.9431	1				39819	4044	26869	26971	40319	40319					0.06762036723375786
STSTSIKVK	9	Unmodified	_STSTSIKVK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49;nc|nan|Q9BVC5-2|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7793884277344	2	475.779482	949.544411	-0.48779	-0.00023208	0.21923	0.0001043	-0.26856	-0.00012778	475.77952729225797	16.749	0.10778	16.749	16.664	16.772	0					6	4	2	0	0	0	0.35021	1	4075	4075		45.972	10.354	1	46711			39820	4044	26869	26971	40320	40320					0.06762036723375786
STSTSSMKK	9	Unmodified	_STSTSSMKK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.73956298828125	2	478.739499	955.464446	-0.25924	-0.00012411	2.0698	0.00099087	1.8105	0.00086677	478.74018014757013	11.816	0.27048	11.816	11.677	11.948	0					18	9	3	0	0	0	0.24095	1	2314	2314		56.721	1.2168	1	242330			39821	1224	26870	26972	40321	40321					-0.015067729421161857
STSTSSMKK	9	Unmodified	_STSTSSMKK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7391662597656	2	478.739499	955.464446	0.65806	0.00031504	-1.407	-0.00067359	-0.74895	-0.00035855	478.73898122687297	11.765	0.17559	11.765	11.693	11.868	0					17	5	4	0	0	0	0.035062	1	2486	2486		104.06	54.032	1	836620			39822	1224	26870	26972	40322	40322					-0.015067729421161857
STSTSSMKK	9	Unmodified	_STSTSSMKK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7399597167969	2	478.739499	955.464446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.726	1	11.726	11.226	12.226	0								0	0	0	0.22284	1	2331	2331		47.657	5.2612	1				39823	1224	26870	26972	40323	40323					-0.015067729421161857
STSTTTHVTK	10	Unmodified	_STSTTTHVTK_					0	0	0		nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.7754516601562	2	531.774928	1061.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.999	1	12.999	12.499	13.499	0								0	0	0	0.13836	1	2517	2517		51.528	7.1506	1				39824	1778	26871	26973	40324	40324					0.006996433670337865
STSTTTHVTK	10	Unmodified	_STSTTTHVTK_					0	0	0		nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.775146484375	2	531.774928	1061.5353	0.12187	6.4806E-05	0.44933	0.00023894	0.5712	0.00030375	531.7752852292288	13.262	0.31424	13.262	13.142	13.456	0					12	8	3	0	0	0	0.03057	1	2983	2983		117.81	43.556	1	2445900			39825	1778	26871	26973	40325	40325					0.006996433670337865
STSTTTHVTK	10	Unmodified	_STSTTTHVTK_					0	0	0		nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7750244140625	2	531.774928	1061.5353	0.31855	0.0001694	-0.2788	-0.00014826	0.039747	2.1136E-05	531.774877303749	13.017	0.086153	13.017	12.953	13.039	0					6	3	2	0	0	0	0.40476	1	2643	2643		51.528	6.5056	1	188540			39826	1778	26871	26973	40326	40326					0.006996433670337865
STSVVAKRQKR	11	Unmodified	_STSVVAKRQKR_					0	0	0			REV__ENSG00000132334|ENST00000254667|PTPRE	REV__ENSG00000132334|ENST00000254667|PTPRE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.5904235839844	3	420.589599	1258.74697	0.87269	0.00036705	1.2773	0.00053721	2.15	0.00090426	420.5900987471984	24.554	0.21429	24.554	24.447	24.661	0					8	4	2	0	0	0	0.74458	1	8621	8621		23.378	0	1	626980	+		39827	14650	26872	26974	40327	40327					0.12794359848635395
STTAILQQK	9	Unmodified	_STTAILQQK_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.28472900390625	2	495.284931	988.55531	-0.06418	-3.1787E-05	0.13923	6.8958E-05	0.075049	3.7171E-05	495.28480389906764	23.688	0.13783	23.688	23.586	23.723	0					6	4	2	0	0	0	0.063823	1	6895	6895		90.37	29.398	1	79575			39828	7362	26873	26975	40328	40328					0.06057439097662609
STTAILQQK	9	Unmodified	_STTAILQQK_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.284912109375	2	495.284931	988.55531	-0.40061	-0.00019842	0.98691	0.0004888	0.58631	0.00029039	495.28511213604287	23.998	0.22698	23.998	23.904	24.131	0					12	5	4	0	0	0	0.048471	1	8034	8034		95.815	19.041	1	828200			39829	7362	26873	26975	40329	40329					0.06057439097662609
STTAILQQK	9	Unmodified	_STTAILQQK_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2841796875	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.723	1	23.723	23.223	24.223	0								0	0	0	0.18645	1	7166	7166		52.937	12.159	1				39830	7362	26873	26975	40330	40330					0.06057439097662609
STTAILQQK	9	Unmodified	_STTAILQQK_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2848205566406	2	495.284931	988.55531	-2.4389	-0.001208	2.1569	0.0010683	-0.28199	-0.00013966	495.28590232245875	23.743	0.1287	23.743	23.665	23.794	0					7	3	3	0	0	0	0.17854	1	7305	7305		64.207	12.872	1	160780			39831	7362	26873	26975	40331	40331					0.06057439097662609
STTAILQQK	9	Unmodified	_STTAILQQK_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2848205566406	2	495.284931	988.55531	2.8313	0.0014023	-2.2159	-0.0010975	0.61536	0.00030478	495.2834814451207	23.906	0.21544	23.906	23.796	24.012	0					6	4	2	0	0	0	0.0406	1	8186	8186		98.629	21.855	1	863590			39832	7362	26873	26975	40332	40332					0.06057439097662609
STTASLSKK	9	Unmodified	_STTASLSKK_					0	0	0		nc|ENSG00000143363|Q86TP1-6|PRUNE1;nc|ENSG00000143363|Q86TP1-5|PRUNE1;nc|ENSG00000143363|Q86TP1-7|PRUNE1;nc|ENSG00000143363|Q86TP1-4|PRUNE1;nc|ENSG00000143363|Q86TP1-3|PRUNE1;nc|ENSG00000143363|Q86TP1-2|PRUNE1;ENSG00000143363|ENST00000271620|PRUNE1	nc|ENSG00000143363|Q86TP1-6|PRUNE1	nc|ENSG00000143363|Q86TP1-6|PRUNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.76336669921875	2	461.763832	921.513111	-0.44528	-0.00020562	-0.11832	-5.4635E-05	-0.5636	-0.00026025	461.76372280520604	13.748	0.15739	13.748	13.692	13.85	0					12	7	3	0	0	0	0.1424	1	2726	2726		69.628	5.4204	1	380110			39833	4541	26874	26976	40333	40333					0.049214636892770613
STTASLSKK	9	Unmodified	_STTASLSKK_					0	0	0		nc|ENSG00000143363|Q86TP1-6|PRUNE1;nc|ENSG00000143363|Q86TP1-5|PRUNE1;nc|ENSG00000143363|Q86TP1-7|PRUNE1;nc|ENSG00000143363|Q86TP1-4|PRUNE1;nc|ENSG00000143363|Q86TP1-3|PRUNE1;nc|ENSG00000143363|Q86TP1-2|PRUNE1;ENSG00000143363|ENST00000271620|PRUNE1	nc|ENSG00000143363|Q86TP1-6|PRUNE1	nc|ENSG00000143363|Q86TP1-6|PRUNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.763427734375	2	461.763832	921.513111	-0.7157	-0.00033048	-0.068538	-3.1648E-05	-0.78424	-0.00036213	461.7637783836777	14.055	0.25745	14.055	13.965	14.223	0					12	6	2	0	0	0	0.035106	1	3348	3348		104.01	39.806	1	4781600			39834	4541	26874	26976	40334	40334					0.049214636892770613
STTASLSKK	9	Unmodified	_STTASLSKK_					0	0	0		nc|ENSG00000143363|Q86TP1-6|PRUNE1;nc|ENSG00000143363|Q86TP1-5|PRUNE1;nc|ENSG00000143363|Q86TP1-7|PRUNE1;nc|ENSG00000143363|Q86TP1-4|PRUNE1;nc|ENSG00000143363|Q86TP1-3|PRUNE1;nc|ENSG00000143363|Q86TP1-2|PRUNE1;ENSG00000143363|ENST00000271620|PRUNE1	nc|ENSG00000143363|Q86TP1-6|PRUNE1	nc|ENSG00000143363|Q86TP1-6|PRUNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.76409912109375	2	461.763832	921.513111	-0.82617	-0.00038149	0.87228	0.00040279	0.046109	2.1291E-05	461.76426587320015	13.787	0.080857	13.787	13.729	13.81	0					6	4	2	0	0	0	0.41113	1	2877	2877		40.778	12.896	1	74785			39835	4541	26874	26976	40335	40335					0.049214636892770613
STTCPAHSWP	10	Unmodified	_STTCPAHSWP_					0	0	0		ENST00000578026.5_1_17:57335188-57344505:+|nuORF	ENST00000578026.5_1_17:57335188-57344505:+|nuORF	ENST00000578026.5_1_17:57335188-57344505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7371215820312	2	543.737291	1085.46003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.839	1	10.839	10.339	11.339	0								0	0	0	0.4201	1	2103	2103		16.473	5.6076	1				39836	10846	26875	26977	40336	40336					-0.07928237365035784
STTENFFLK	9	Unmodified	_STTENFFLK_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.777587890625	2	543.776939	1085.53933	1.8778	0.0010211	-0.56928	-0.00030956	1.3085	0.00071154	543.7767104166769	38.998	0.2167	38.998	38.923	39.139	0					12	8	2	0	0	0	0.15163	1	14821	14821		67.494	16.158	1	135140			39837	1051	26876	26978	40337	40337					-2.2671392343909247E-05
STTETKEPK	9	Unmodified	_STTETKEPK_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7640380859375	2	510.764029	1019.5135	-0.42925	-0.00021925	0.12641	6.4564E-05	-0.30285	-0.00015468	510.76404863827247	12.263	0.30077	12.263	12.126	12.427	0					17	7	4	0	0	0	0.0016668	1	2720	2720		176.44	64.034	1	1201300			39838	5509	26877	26979	40338	40338					0.004528386184915689
STTGCVLNK	9	Carbamidomethyl (C)	_STTGC(Carbamidomethyl (C))VLNK_	STTGC(1)VLNK		STTGC(70)VLNK		0	1	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000480324.5_1_1:111690336-111702181:+|nuORF;CEPT1|p.C185Vfs*26|1|0.36|ENSG00000134255|chr1:111161214-111161214|T/-|frameshift_variant;CEPT1|p.C185Lfs*28|1|0.43|ENSG00000134255|chr1:111161213-111161214|-/T|frameshift_variant	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.24737548828125	2	490.247492	978.48043	-0.47388	-0.00023232	1.0592	0.00051928	0.58535	0.00028697	490.2476748596392	20.33	0.11211	20.33	20.275	20.387	0					4	2	2	0	0	0	0.1424	1	6305	6305		69.628	12.907	1	450640			39839	3904	26878	26980	40339	40339	167				-0.00967066705209163
STTGCVLNK	9	Carbamidomethyl (C)	_STTGC(Carbamidomethyl (C))VLNK_	STTGC(1)VLNK		STTGC(100)VLNK		0	1	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000480324.5_1_1:111690336-111702181:+|nuORF;CEPT1|p.C185Vfs*26|1|0.36|ENSG00000134255|chr1:111161214-111161214|T/-|frameshift_variant;CEPT1|p.C185Lfs*28|1|0.43|ENSG00000134255|chr1:111161213-111161214|-/T|frameshift_variant	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2474060058594	2	490.247492	978.48043	0.59792	0.00029313	0.25374	0.00012439	0.85166	0.00041753	490.2471260305263	20.221	0.26846	20.221	20.112	20.38	0					7	5	2	0	0	0	0.037569	1	6533	6533		101.6	22.15	1	460400			39840	3904	26878	26980	40340	40340	167				-0.00967066705209163
STTHAKTFE	9	Unmodified	_STTHAKTFE_					0	0	0			REV__ENSG00000176387|ENST00000326152|HSD11B2	REV__ENSG00000176387|ENST00000326152|HSD11B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2299499511719	2	511.251089	1020.48762	-0.43633	-0.00022307	0.32231	0.00016478	-0.11402	-5.8292E-05	511.2512511866644	15.558	0.56168	15.558	15.451	16.013	0					19	11	3	0	0	0	0.47473	1	4481	4481		27.882	0	1	2976100	+		39841	16651	26879	26981	40341	40341					-0.021800108331490264
STTHKYSAII	10	Unmodified	_STTHKYSAII_					0	0	0			REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	374.2046203613281	3	374.204751	1119.59242	0.50261	0.00018808	-1.1907	-0.00044555	-0.68806	-0.00025748	374.20437662267386	22.04	0.15378	22.04	21.954	22.107	0					7	4	2	0	0	0	0.68218	1	6172	6172		36.447	2.5251	1	170630	+		39842	17403	26880	26982	40342	40342					0.03741110643431966
STTHLMTGK	9	Unmodified	_STTHLMTGK_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2499084472656	2	488.250034	974.485516	0.7506	0.00036648	-0.54872	-0.00026791	0.20187	9.8565E-05	488.2496525952817	17.78	0.16986	17.78	17.696	17.866	0					8	4	3	0	0	0	0.12834	1	5091	5091		72.879	23.438	1	306560			39843	4282	26881	26983	40343	40343					-0.002747628425822768
STTHLMTGK	9	Unmodified	_STTHLMTGK_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.24993896484375	2	488.250034	974.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.766	1	17.766	17.266	18.266	0								0	0	0	0.29356	1	5186	5186		36.447	4.9169	1				39844	4282	26881	26983	40344	40344					-0.002747628425822768
STTNQSISK	9	Unmodified	_STTNQSISK_					0	0	0		EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2485656738281	2	483.248546	964.482539	-0.59947	-0.00028969	0.84242	0.0004071	0.24295	0.0001174	483.2490894958222	14.617	0.36996	14.617	14.558	14.928	0					11	7	3	0	0	0	0.0059342	1	3687	3687		154.01	41.904	1	600790			39845	879	26882	26984	40345	40345					-0.0011231469576387099
STTQDPTAG	9	Unmodified	_STTQDPTAG_					0	0	0			REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6	REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.1986999511719	2	439.198522	876.38249	0.33006	0.00014496	-0.24321	-0.00010682	0.086844	3.8142E-05	439.19856321558484	20.93	0.52604	20.93	20.569	21.095	0					24	12	3	0	0	0	0.34452	1	5928	5928		46.457	0	1	127810	+		39846	13462	26883	26985	40346	40346					-0.06064552029567949
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3157958984375	2	523.316232	1044.61791	1.4921	0.00078083	-1.0236	-0.00053568	0.46845	0.00024515	523.3156656558021	33.496	0.26665	33.496	33.377	33.644	0					19	9	3	0	0	0	0.073361	1	10880	10880		101.46	43.23	1	676810			39847	7635	26884	26986	40347	40347					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3158569335938	2	523.316232	1044.61791	0.76493	0.0004003	-0.41108	-0.00021513	0.35385	0.00018517	523.3159542567713	33.49	0.23853	33.49	33.398	33.636	0					15	8	3	0	0	0	0.05785	1	10884	10884		106.68	16.082	1	667000			39848	7635	26884	26986	40348	40348					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3165893554688	2	523.316232	1044.61791	0.088376	4.6249E-05	0.47918	0.00025076	0.56756	0.00029701	523.3164986250925	33.778	0.34985	33.778	33.649	33.998	0					22	9	3	0	0	0	0.006574	1	12511	12511		160.82	78.581	1	2547900			39849	7635	26884	26986	40349	40349					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3165283203125	2	523.316232	1044.61791	0.48893	0.00025587	-0.057684	-3.0187E-05	0.43125	0.00022568	523.3161840270243	33.541	0.32087	33.541	33.434	33.755	0					32	12	4	0	0	0	0.0081296	1	11253	11253		152.06	56.246	1	1932400			39850	7635	26884	26986	40350	40350					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3162231445312	2	523.316232	1044.61791	1.7922	0.00093787	-1.1524	-0.00060305	0.63979	0.00033481	523.3156222711037	33.762	0.31838	33.762	33.646	33.964	0					26	8	4	0	0	0	0.030824	1	12921	12921		117.53	62.803	1	9650700			39851	7635	26884	26986	40351	40351					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.31640625	2	523.316232	1044.61791	1.1084	0.00058004	-0.521	-0.00027265	0.5874	0.00030739	523.3159676323927	33.536	0.30776	33.536	33.414	33.722	0					28	8	5	0	0	0	0.034592	1	11751	11751		114.86	53.167	1	1493800			39852	7635	26884	26986	40352	40352					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3163452148438	2	523.316232	1044.61791	1.6256	0.00085068	-1.2936	-0.00067698	0.33191	0.0001737	523.3155745825294	33.692	0.27621	33.692	33.583	33.859	0					17	6	3	0	0	0	4.3945E-06	1	12842	12842		199.89	82.988	1	6084000			39853	7635	26884	26986	40353	40353					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3165283203125	2	523.316232	1044.61791	3.4153	0.0017873	-2.6039	-0.0013627	0.81132	0.00042458	523.3148703574647	33.725	0.37418	33.725	33.566	33.94	0					22	8	4	0	0	0	0.0010959	1	12835	12835		181.41	82.825	1	10729000			39854	7635	26884	26986	40354	40354					0.09738585165860059
STTRLYLRK	9	Unmodified	_STTRLYLRK_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.896240234375	3	379.89614	1136.66659	0.52356	0.0001989	-0.59125	-0.00022461	-0.067692	-2.5716E-05	379.8959806099836	19.608	0.19004	19.608	19.525	19.715	0					9	5	2	0	0	0	0.30841	1	5114	5114		49.536	19.218	1	83036			39855	1253	26885	26987	40355	40355					0.10372498525589435
STTRLYLRK	9	Unmodified	_STTRLYLRK_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.8960876464844	3	379.89614	1136.66659	-1.1193	-0.00042523	1.2797	0.00048616	0.16039	6.0932E-05	379.89660865962713	19.656	0.15013	19.656	19.586	19.737	0					11	5	3	0	0	0	0.44949	1	5368	5368		37.508	12.989	1	259910			39856	1253	26885	26987	40356	40356					0.10372498525589435
STTRLYLRK	9	Unmodified	_STTRLYLRK_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.3405151367188	2	569.340572	1136.66659	-0.27229	-0.00015503	0.40481	0.00023047	0.13252	7.5447E-05	569.3403357490472	19.653	0.096169	19.653	19.61	19.706	0					9	3	3	0	0	0	0.61124	1	5365	5365		14.865	9.3071	1	60718			39857	1253	26885	26987	40357	40357					0.10372498525589435
STTRLYLRK	9	Unmodified	_STTRLYLRK_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.89605712890625	3	379.89614	1136.66659	0.50961	0.0001936	-0.70465	-0.00026769	-0.19504	-7.4094E-05	379.8958925333724	19.817	0.42073	19.817	19.758	20.178	0					18	8	3	0	0	0	0.10506	1	6338	6338		78.264	38.206	1	3509700			39858	1253	26885	26987	40358	40358					0.10372498525589435
STTRLYLRK	9	Unmodified	_STTRLYLRK_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.8962097167969	3	379.89614	1136.66659	-2.1428	-0.00081405	1.463	0.0005558	-0.67979	-0.00025825	379.8968838865633	19.722	0.13548	19.722	19.645	19.781	0					5	3	2	0	0	0	0.33044	1	5409	5409		47.657	18.487	1	47880			39859	1253	26885	26987	40359	40359					0.10372498525589435
STTRLYLRK	9	Unmodified	_STTRLYLRK_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.89605712890625	3	379.89614	1136.66659	0.65507	0.00024886	-0.90307	-0.00034307	-0.248	-9.4214E-05	379.895838409073	19.833	0.57042	19.833	19.723	20.294	0					21	11	4	0	0	0	0.43488	1	6209	6209		38.754	8.1847	1	3275200			39860	1253	26885	26987	40360	40360					0.10372498525589435
STTRRPPFL	9	Unmodified	_STTRRPPFL_					0	0	0		ENST00000526269.2_1_11:128561788-128562594:-|nuORF	ENST00000526269.2_1_11:128561788-128562594:-|nuORF	ENST00000526269.2_1_11:128561788-128562594:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8747253417969	3	358.873336	1073.59818	0.48437	0.00017383	2.2828	0.00081925	2.7672	0.00099307	358.8744492417994	24.3	0.15175	24.3	24.204	24.356	0					10	3	4	0	0	0	0.44593	1	8151	8151		37.812	1.3648	1	649060			39861	10376	26886	26988	40361	40361					0.0643225394574074
STTSHTTAK	9	Unmodified	_STTSHTTAK_					0	0	0		ENSG00000155975|ENST00000324849|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENST00000520639.1_1_5:153873511-153874012:+|nuORF	ENSG00000155975|ENST00000324849|VPS37A	ENSG00000155975|ENST00000324849|VPS37A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2358703613281	2	467.235439	932.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.533	1	10.533	10.033	11.033	0								0	0	0	0.22284	1	2021	2021		47.657	12.457	1				39862	5147	26887	26989	40362	40362					-0.012605838672470782
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.8046264648438	2	560.803488	1119.59242	1.4351	0.00080483	-0.52817	-0.0002962	0.90696	0.00050863	560.8031382489181	22.031	0.30496	22.031	21.954	22.259	0					26	9	5	0	0	0	0.3337	1	6155	6155		63.534	7.1001	1	1850400			39863	5177	26888	26990	40363	40363					0.03741110643431966
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.8034057617188	2	560.803488	1119.59242	0.65828	0.00036916	-0.90285	-0.00050632	-0.24458	-0.00013716	560.8029331771825	22.277	0.85826	22.277	22.119	22.978	0					39	17	5	0	0	0	0.026103	1	7502	7502		120.87	40.414	1	17081000			39864	5177	26888	26990	40364	40364					0.03741110643431966
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.8048095703125	2	560.803488	1119.59242	1.5532	0.00087106	-0.79462	-0.00044562	0.75862	0.00042544	560.8030489626548	22.136	0.36054	22.136	22.046	22.407	0					20	8	4	0	0	0	0.11308	1	6528	6528		93.143	31.452	1	2106300			39865	5177	26888	26990	40365	40365					0.03741110643431966
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.803955078125	2	560.803488	1119.59242	1.0194	0.00057169	-0.39239	-0.00022006	0.62702	0.00035163	560.8033656158872	22.119	0.27109	22.119	22.033	22.304	0					16	6	4	0	0	0	0.049549	1	6544	6544		109.48	38.662	1	829340			39866	5177	26888	26990	40366	40366					0.03741110643431966
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.8035278320312	2	560.803488	1119.59242	1.8097	0.0010149	-1.3667	-0.00076644	0.44301	0.00024844	560.802642773817	22.278	0.46534	22.278	22.173	22.638	0					27	9	5	0	0	0	0.021567	1	7372	7372		124.08	53.264	1	5176600			39867	5177	26888	26990	40367	40367					0.03741110643431966
STTTQTISQ	9	Unmodified	_STTTQTISQ_					0	0	0			REV__NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	REV__NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.740234375	2	483.740554	965.466554	0.6084	0.00029431	-1.1864	-0.00057389	-0.57795	-0.00027958	483.739978627744	15.701	0.20944	15.701	15.615	15.824	0					14	5	3	0	0	0	0.1424	1	4119	4119		69.628	5.4204	1	764040	+		39868	16517	26889	26991	40368	40368					-0.017560209326575205
STTTQTISQ	9	Unmodified	_STTTQTISQ_					0	0	0			REV__NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	REV__NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.74017333984375	2	483.740554	965.466554	-0.097286	-4.7061E-05	-0.58169	-0.00028139	-0.67898	-0.00032845	483.74027040866224	15.643	0.31219	15.643	15.584	15.896	0					13	6	3	0	0	0	0.021961	1	4327	4327		118.74	6.3322	1	808410	+		39869	16517	26889	26991	40369	40369					-0.017560209326575205
STTTQTISQ	9	Unmodified	_STTTQTISQ_					0	0	0			REV__NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	REV__NLRP13|p.F460Sfs*10|1|0.2|ENSG00000173572|chr19:55912438-55912438|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7401428222656	2	483.740554	965.466554	-0.59165	-0.0002862	-0.12453	-6.0241E-05	-0.71618	-0.00034644	483.7403866884466	15.656	0.26897	15.656	15.546	15.815	0					15	5	4	0	0	0	0.047855	1	4184	4184		96.034	10.172	1	1140500	+		39870	16517	26889	26991	40370	40370					-0.017560209326575205
STTTSSTPPK	10	Unmodified	_STTTSSTPPK_					0	0	0		GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant;ENSG00000121957|ENST00000264126|GPSM2	GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7562561035156	2	503.756204	1005.49785	1.0158	0.0005117	-1.7042	-0.00085852	-0.68845	-0.00034681	503.7549742592617	14.275	0.77321	14.275	14.024	14.797	0					29	16	3	0	0	0	0.31894	1	3655	3655		65.157	20.78	1	293270			39871	3243	26890	26992	40371	40371					-0.004674478985748465
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.76678466796875	2	490.766571	979.51859	-0.1351	-6.6303E-05	-0.020292	-9.9589E-06	-0.15539	-7.6262E-05	490.76659322314055	17.144	0.14115	17.144	17.073	17.214	0					10	4	3	0	0	0	0.11411	1	4028	4028		76.17	10.704	1	285760			39872	5293	26891	26993	40372	40372					0.028011424810870267
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.766357421875	2	490.766571	979.51859	-1.258	-0.00061737	0.76304	0.00037447	-0.49494	-0.0002429	490.76692998725673	17.17	0.1457	17.17	17.139	17.284	0					10	4	4	0	0	0	0.037924	1	4262	4262		101.25	8.1094	1	403410			39873	5293	26891	26993	40373	40373					0.028011424810870267
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.76629638671875	2	490.766571	979.51859	0.59054	0.00028982	-0.97409	-0.00047805	-0.38356	-0.00018824	490.7660885150408	17.398	0.29993	17.398	17.351	17.651	0					13	6	4	0	0	0	0.0016668	1	5171	5171		176.44	36.474	1	1903800			39874	5293	26891	26993	40374	40374					0.028011424810870267
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7662353515625	2	490.766571	979.51859	-0.097663	-4.793E-05	-0.65411	-0.00032102	-0.75178	-0.00036895	490.76628245719553	17.194	0.15362	17.194	17.128	17.281	0					8	4	3	0	0	0	0.054723	1	4243	4243		93.598	0.45434	1	405190			39875	5293	26891	26993	40375	40375					0.028011424810870267
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7662658691406	2	490.766571	979.51859	-2.7596	-0.0013543	1.779	0.00087306	-0.98068	-0.00048128	490.76774966618166	17.187	0.071838	17.187	17.156	17.227	0					4	2	2	0	0	0	0.38666	1	4240	4240		42.864	1.4377	1	105780			39876	5293	26891	26993	40376	40376					0.028011424810870267
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7662658691406	2	490.766571	979.51859	0.78533	0.00038541	-1.2963	-0.00063619	-0.51099	-0.00025078	490.7658997048758	17.371	0.30562	17.371	17.326	17.632	0					11	6	2	0	0	0	0.011389	1	5010	5010		138.06	10.601	1	2422700			39877	5293	26891	26993	40377	40377					0.028011424810870267
STTTTTHITK	10	Unmodified	_STTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7910766601562	2	545.790578	1089.5666	0.4118	0.00022476	-0.85926	-0.00046897	-0.44745	-0.00024421	545.7902493429131	15.405	0.46769	15.405	15.19	15.658	0					26	11	4	0	0	0	0.0081296	1	3961	3961		152.06	74.743	1	29767000			39878	1630;9658;1676	26892	26994	40378	40378					0.0254021640114388
STTTTTHITK	10	Unmodified	_STTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7906494140625	2	545.790578	1089.5666	-0.23829	-0.00013005	0.95851	0.00052314	0.72022	0.00039309	545.7910562427156	15.153	0.184	15.153	15.088	15.272	0					24	7	5	0	0	0	0.041742	1	3386	3386		112.11	60.915	1	4412700			39879	1630;9658;1676	26892	26994	40379	40379					0.0254021640114388
STTTTTHITK	10	Unmodified	_STTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7907104492188	2	545.790578	1089.5666	0.33214	0.00018128	-0.54697	-0.00029853	-0.21484	-0.00011726	545.7902737648914	15.408	0.31144	15.408	15.306	15.617	0					19	6	5	0	0	0	0.010724	1	4193	4193		140.11	62.795	1	16398000			39880	1630;9658;1676	26892	26994	40380	40380					0.0254021640114388
STTTTTHITK	10	Unmodified	_STTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.7907104492188	2	545.790578	1089.5666	3.7492	0.0020463	-3.2318	-0.0017639	0.51745	0.00028242	545.7888272757972	15.346	0.2485	15.346	15.28	15.529	0					7	5	2	0	0	0	0.3337	1	4032	4032		63.534	22.756	1	679800			39881	1630;9658;1676	26892	26994	40381	40381					0.0254021640114388
STTVIGCVK	9	Unmodified	_STTVIGCVK_					0	0	0		nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B	nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.24932861328125	2	454.249503	906.484453	0.71001	0.00032252	-1.8997	-0.00086293	-1.1897	-0.0005404	454.248752028461	27.628	0.43479	27.628	27.542	27.977	0					21	10	3	0	0	0	0.16002	1	9685	9685		66.429	13.493	1	401720			39882	7317	26893	26995	40382	40382					0.02747022788491904
STTVIGCVK	9	Unmodified	_STTVIGCVK_					0	0	0		nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B	nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2491455078125	2	454.249503	906.484453	-0.1286	-5.8417E-05	-1.0879	-0.00049417	-1.2165	-0.00055259	454.24897529424277	27.582	0.45872	27.582	27.473	27.931	0					14	9	3	0	0	0	0.037569	1	10017	10017		101.6	13.846	1	196300			39883	7317	26893	26995	40383	40383					0.02747022788491904
STTVIGCVK	9	Unmodified	_STTVIGCVK_					0	0	0		nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B	nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2495422363281	2	454.249503	906.484453	-0.4207	-0.0001911	-1.3351	-0.00060646	-1.7558	-0.00079756	454.24906027305803	27.569	0.51875	27.569	27.407	27.926	0					22	10	3	0	0	0	0.25716	1	9869	9869		54.776	3.4409	1	323680			39884	7317	26893	26995	40384	40384					0.02747022788491904
STTVLFISQR	10	Unmodified	_STTVLFISQR_					0	0	0		ENSG00000102531|ENST00000492622|FNDC3A;nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	ENSG00000102531|ENST00000492622|FNDC3A	ENSG00000102531|ENST00000492622|FNDC3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.323486328125	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.543	1	38.543	38.043	39.043	0								0	0	0	0.012705	1	14652	14652		109.44	32.665	1				39885	2175	26894	26996	40385	40385					0.06533086051786086
STTVSPAVQ	9	Unmodified	_STTVSPAVQ_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;ZEB1|p.K1058Nfs*20|1|0.36|ENSG00000148516|chr10:31527059-31527059|A/-|frameshift_variant;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.23504638671875	2	445.234907	888.455261	-0.46491	-0.00020699	1.3415	0.00059729	0.8766	0.00039029	445.2354753424663	14.779	0.28583	14.779	14.685	14.971	0					14	13	2	0	0	0	0.48389	1	3201	3201		34.173	0	1	48134			39886	4838	26895	26997	40386	40386					0.006572017638632133
STTVSPAVQ	9	Unmodified	_STTVSPAVQ_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;ZEB1|p.K1058Nfs*20|1|0.36|ENSG00000148516|chr10:31527059-31527059|A/-|frameshift_variant;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2347106933594	2	445.234907	888.455261	-0.46331	-0.00020628	0.27878	0.00012412	-0.18453	-8.216E-05	445.23504484532776	15.005	0.56989	15.005	14.86	15.429	0					20	11	2	0	0	0	0.39215	1	3836	3836		42.396	0	1	224230			39887	4838	26895	26997	40387	40387					0.006572017638632133
STTWGCLWIST	11	Unmodified	_STTWGCLWIST_					0	0	0		ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant;ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	ARHGAP1|p.L237Cfs*135|2|0.38|ENSG00000175220|chr11:46680674-46680674|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.8678283691406	3	418.865629	1253.57506	2.6838	0.0011241	2.2488	0.00094196	4.9326	0.0020661	418.86669042855806	14.986	0.16817	14.986	14.928	15.096	0					7	3	3	0	0	0	0.38515	1	3868	3868		53.089	15.581	1	403840			39888	196	26896	26998	40388	40388					-0.041585529538906485
STVAGAKK	8	Unmodified	_STVAGAKK_					0	0	0			REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.22943115234375	2	381.229428	760.444303	0.14169	5.4017E-05	-0.036155	-1.3783E-05	0.10554	4.0234E-05	381.22937176078307	13.741	0.20618	13.741	13.653	13.859	0					15	5	4	0	0	0	0.32815	1	3200	3200		79.451	13.648	1	2339100	+		39889	13953	26897	26999	40389	40389					0.05449844180236596
STVAGAKK	8	Unmodified	_STVAGAKK_					0	0	0			REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.22930908203125	2	381.229428	760.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.765	1	13.765	13.265	14.265	0								0	0	0	1.7419	1	3425	3425		58.782	4.0056	1		+		39890	13953	26897	26999	40390	40390					0.05449844180236596
STVAGAKK	8	Unmodified	_STVAGAKK_					0	0	0			REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.22943115234375	2	381.229428	760.444303	0.45357	0.00017292	-0.57426	-0.00021892	-0.12068	-4.6008E-05	381.22920325691047	13.729	0.15411	13.729	13.67	13.824	0					5	3	2	0	0	0	0.3961	1	3417	3417		71.296	0	1	373510	+		39891	13953	26897	26999	40391	40391					0.05449844180236596
STVAGAKK	8	Unmodified	_STVAGAKK_					0	0	0			REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	REV__PPM1H|p.T227Hfs*30|2|0.16|ENSG00000111110|chr12:62801894-62801894|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	381.229248046875	2	381.229428	760.444303	-2.1499	-0.00081959	2.5625	0.00097689	0.41262	0.0001573	381.2304474111576	13.517	0.088556	13.517	13.45	13.539	0					6	4	2	0	0	0	0.34985	1	2724	2724		76.847	21.342	1	76528	+		39892	13953	26897	26999	40392	40392					0.05449844180236596
STVDAEAVHK	10	Unmodified	_STVDAEAVHK_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2708129882812	2	528.769645	1055.52474	0.50622	0.00026767	-0.71354	-0.0003773	-0.20733	-0.00010963	528.7695202105552	17.454	0.11709	17.454	17.378	17.495	0					6	4	2	0	0	0	0.15878	1	4165	4165		85.161	23.053	1	61879			39893	2958	26898	27000	40393	40393					-0.0008033928741042473
STVDAEAVHK	10	Unmodified	_STVDAEAVHK_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7698974609375	2	528.769645	1055.52474	0.10994	5.8131E-05	0.44655	0.00023612	0.55649	0.00029425	528.7698854545678	17.771	0.13083	17.771	17.685	17.816	0					8	3	3	0	0	0	0.14151	1	5081	5081		88.177	23.97	1	608620			39894	2958	26898	27000	40394	40394					-0.0008033928741042473
STVDAEAVHK	10	Unmodified	_STVDAEAVHK_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7713623046875	2	528.769645	1055.52474	-1.1729	-0.00062019	2.8345	0.0014988	1.6616	0.0008786	528.7713060251963	17.53	0.10776	17.53	17.461	17.568	0					5	3	2	0	0	0	0.17315	1	4383	4383		82.75	41.972	1	110300			39895	2958	26898	27000	40395	40395					-0.0008033928741042473
STVDWARR	8	Unmodified	_STVDWARR_					0	0	0			REV__NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	REV__NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7637023925781	2	495.759415	989.504277	0.71907	0.00035649	4.3418	0.0021525	5.0609	0.002509	495.76188012151914	16.12	0.16674	16.12	16.013	16.179	0					5	3	2	0	0	0	0.67394	1	4557	4557		37.159	0	1	321330	+		39896	16787	26899	27001	40396	40396					0.009105348434673033
STVEFLLSK	9	Unmodified	_STVEFLLSK_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;TANC1|p.L1158S|1|0.35|ENSG00000115183|chr2:159219332-159219332|T/C|missense_variant;ENST00000470074.1_1_2:160055548-160076048:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2904052734375	2	512.289682	1022.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.715	1	41.715	41.215	42.215	0								0	0	0	0.17415	1	16610	16610		54.722	20.801	1				39897	2886	26900	27002	40397	40397					0.05443207383200388
STVEKIAMK	9	Unmodified	_STVEKIAMK_					0	0	0		SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7845458984375	2	503.78371	1005.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.543	1	21.543	21.043	22.043	0								0	0	0	0.0052769	1	7159	7159		114.89	29.979	1				39898	3605	26901	27003	40398	40398					0.0503126736834929
STVEKIAMK	9	Unmodified	_STVEKIAMK_					0	0	0		SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7835388183594	2	503.78371	1005.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.423	1	21.423	20.923	21.923	0								0	0	0	0.15687	1	6208	6208		58.23	15.834	1				39899	3605	26901	27003	40399	40399					0.0503126736834929
STVEKIAMK	9	Unmodified	_STVEKIAMK_					0	0	0		SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	SEC14L1|p.G159Efs*12|1|0.17|ENSG00000129657|chr17:77193544-77193544|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7877502441406	2	503.78371	1005.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.492	1	21.492	20.992	21.992	0								0	0	0	0.088368	1	7005	7005		75.043	14.749	1				39900	3605	26901	27003	40400	40400					0.0503126736834929
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.275146484375	2	544.274564	1086.53457	1.1711	0.00063739	-0.22782	-0.000124	0.94325	0.00051339	544.2744047276559	25.906	0.3274	25.906	25.734	26.061	0					18	7	4	0	0	0	7.6035E-06	1	7796	7796		180.87	106.61	1	694890			39901	5185	26902	27004	40401	40401					-0.005231512820046191
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.27490234375	2	544.274564	1086.53457	0.367	0.00019975	0.55395	0.0003015	0.92095	0.00050125	544.2747303602388	26.12	0.46714	26.12	25.986	26.453	0					34	11	6	0	0	0	4.6477E-05	1	8956	8956		163.15	70.008	1	5036700			39902	5185	26902	27004	40402	40402					-0.005231512820046191
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2747802734375	2	544.274564	1086.53457	0.44632	0.00024292	0.43068	0.00023441	0.877	0.00047733	544.2746898652166	25.892	0.33335	25.892	25.76	26.094	0					15	7	3	0	0	0	7.6035E-06	1	8080	8080		180.87	103.55	1	1319100			39903	5185	26902	27004	40403	40403					-0.005231512820046191
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2749633789062	2	544.274564	1086.53457	0.32469	0.00017672	0.78883	0.00042934	1.1135	0.00060606	544.274769586986	26.109	0.1659	26.109	26.051	26.217	0					5	3	2	0	0	0	0.25663	1	9321	9321		67.494	10.773	1	91773			39904	5185	26902	27004	40404	40404					-0.005231512820046191
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2747802734375	2	544.274564	1086.53457	1.0929	0.00059484	-0.53766	-0.00029264	0.55523	0.0003022	544.2743078083337	25.958	0.35531	25.958	25.778	26.133	0					10	6	2	0	0	0	0.012338	1	8298	8298		124.08	63.962	1	549200			39905	5185	26902	27004	40405	40405					-0.005231512820046191
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.27490234375	2	544.274564	1086.53457	1.9797	0.0010775	-1.0959	-0.00059644	0.88389	0.00048108	544.2738299006367	26.093	0.51905	26.093	25.983	26.502	0					20	10	3	0	0	0	2.2155E-05	1	9163	9163		172.25	79.105	1	2714000			39906	5185	26902	27004	40406	40406					-0.005231512820046191
STVGGQSVKK	10	Unmodified	_STVGGQSVKK_					0	0	0		RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant;nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7826843261719	2	495.782556	989.550559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.27	1	14.27	13.77	14.77	0								0	0	0	0.12818	1	3439	3439		74.165	13.871	1				39907	1231	26903	27005	40407	40407					0.055365549549037496
STVGGQSVKK	10	Unmodified	_STVGGQSVKK_					0	0	0		RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant;nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7823486328125	2	495.782556	989.550559	0.72039	0.00035716	-0.75622	-0.00037492	-0.035831	-1.7764E-05	495.78204927141803	14.175	0.11402	14.175	14.12	14.234	0					4	2	2	0	0	0	0.073361	1	3632	3632		101.46	36.303	1	847490			39908	1231	26903	27005	40408	40408					0.055365549549037496
STVGSAISR	9	Unmodified	_STVGSAISR_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.23992919921875	2	439.240524	876.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.956	1	20.956	20.456	21.456	0								0	0	0	0.010168	1	5938	5938		109.48	37.601	1				39909	2094	26904	27006	40409	40409					0.023320238579913166
STVGSAISR	9	Unmodified	_STVGSAISR_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.23992919921875	2	439.240524	876.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.036	1	21.036	20.536	21.536	0								0	0	0	0.010168	1	6026	6026		109.48	29.766	1				39910	2094	26904	27006	40410	40410					0.023320238579913166
STVGSAISRK	10	Unmodified	_STVGSAISRK_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2882995605469	2	503.288005	1004.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.009	1	18.009	17.509	18.509	0								0	0	0	0.060762	1	4412	4412		88.177	3.2614	1				39911	2094	26905	27007	40411	40411					0.059359573291771994
STVGSAISRK	10	Unmodified	_STVGSAISRK_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2879333496094	2	503.288005	1004.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.355	1	18.355	17.855	18.855	0								0	0	0	0.049082	1	5354	5354		91.265	11.553	1				39912	2094	26905	27007	40412	40412					0.059359573291771994
STVGSAISRK	10	Unmodified	_STVGSAISRK_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2883605957031	2	503.288005	1004.56146	-0.49767	-0.00025047	1.1441	0.00057583	0.64647	0.00032536	503.2886621711721	18.284	0.27153	18.284	18.122	18.394	0					8	5	2	0	0	0	0.018513	1	5595	5595		126.24	41.082	1	1522000			39913	2094	26905	27007	40413	40413					0.059359573291771994
STVGTSNLK	9	Unmodified	_STVGTSNLK_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7484130859375	2	453.748182	905.481811	-0.0016804	-7.6247E-07	0.16681	7.5691E-05	0.16513	7.4929E-05	453.748249785885	19.495	0.13352	19.495	19.402	19.535	0					9	4	3	0	0	0	0.0097668	1	5049	5049		141.52	36.774	1	380390			39914	3968	26906	27008	40414	40414					0.02528890655196392
STVGTSNLK	9	Unmodified	_STVGTSNLK_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.7483825683594	2	453.748182	905.481811	-1.1938	-0.00054171	0.87616	0.00039755	-0.31769	-0.00014415	453.74853592528757	19.521	0.14863	19.521	19.413	19.562	0					7	4	2	0	0	0	0.10915	1	5292	5292		77.318	5.4401	1	458640			39915	3968	26906	27008	40415	40415					0.02528890655196392
STVGTSNLK	9	Unmodified	_STVGTSNLK_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.74810791015625	2	453.748182	905.481811	0.72105	0.00032718	-0.88019	-0.00039939	-0.15914	-7.2211E-05	453.7478045727135	19.718	0.26791	19.718	19.609	19.877	0					11	5	3	0	0	0	0.035106	1	6292	6292		104.01	16.317	1	3476400			39916	3968	26906	27008	40416	40416					0.02528890655196392
STVGTSNLK	9	Unmodified	_STVGTSNLK_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.74786376953125	2	453.748182	905.481811	0.2839	0.00012882	-0.1326	-6.0169E-05	0.1513	6.8651E-05	453.7480787672945	19.557	0.14163	19.557	19.463	19.604	0					6	3	2	0	0	0	0.016683	1	5324	5324		127.46	39.707	1	267020			39917	3968	26906	27008	40417	40417					0.02528890655196392
STVGTSNLK	9	Unmodified	_STVGTSNLK_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7479248046875	2	453.748182	905.481811	0.033099	1.5018E-05	-0.33107	-0.00015022	-0.29797	-0.0001352	453.748015500277	19.54	0.18055	19.54	19.45	19.63	0					8	4	3	0	0	0	0.003936	1	5335	5335		163.15	58.404	1	429170			39918	3968	26906	27008	40418	40418					0.02528890655196392
STVGTSNLK	9	Unmodified	_STVGTSNLK_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.74798583984375	2	453.748182	905.481811	-0.4178	-0.00018958	-0.10976	-4.9802E-05	-0.52755	-0.00023938	453.7481453360888	19.698	0.36953	19.698	19.541	19.91	0					11	7	2	0	0	0	0.0067848	1	6145	6145		150.36	33.458	1	2509000			39919	3968	26906	27008	40419	40419					0.02528890655196392
STVHEILCK	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))STVHEILC(Carbamidomethyl (C))K_	STVHEILC(1)K		STVHEILC(51)K		1	1	0		ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENST00000557937.5_1_15:60655071-60678274:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.7904052734375	2	564.789524	1127.56449	0.16033	9.0551E-05	0.32353	0.00018273	0.48386	0.00027328	564.7899964822892	34.169	0.13603	34.169	34.077	34.213	0					6	3	2	0	0	0	0.28897	1	13152	13152		51.193	19.663	1	131770			39920	6915	26907	27009	40420	40420	295				0.005814643916892237
STVHGGIQK	9	Unmodified	_STVHGGIQK_					0	0	0		RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7568664550781	2	463.756341	925.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.493	1	14.493	13.993	14.993	0								0	0	0	0.035155	1	2989	2989		93.195	26.766	1				39921	1847	26908	27010	40421	40421					0.03240016611937335
STVHGGIQK	9	Unmodified	_STVHGGIQK_					0	0	0		RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.75604248046875	2	463.756341	925.498129	0.60279	0.00027955	-2.0535	-0.00095232	-1.4507	-0.00067277	463.755807198611	14.781	0.25812	14.781	14.693	14.951	0					15	6	4	0	0	0	0.0792	1	3686	3686		84.916	19.112	1	1146400			39922	1847	26908	27010	40422	40422					0.03240016611937335
STVHGGIQK	9	Unmodified	_STVHGGIQK_					0	0	0		RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7568054199219	2	463.756341	925.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.543	1	14.543	14.043	15.043	0								0	0	0	0.17378	1	3098	3098		54.776	19.158	1				39923	1847	26908	27010	40423	40423					0.03240016611937335
STVHMHSS	8	Unmodified	_STVHMHSS_					0	0	0		AIMP2|p.T154M|1|0.16|ENSG00000106305|chr7:6017932-6017932|C/T|missense_variant	AIMP2|p.T154M|1|0.16|ENSG00000106305|chr7:6017932-6017932|C/T|missense_variant	AIMP2|p.T154M|1|0.16|ENSG00000106305|chr7:6017932-6017932|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.1981201171875	2	443.197802	884.381051	-0.35264	-0.00015629	1.2664	0.00056126	0.91376	0.00040498	443.1983566853269	13.762	0.43238	13.762	13.544	13.976	0					24	11	3	0	0	0	0.79719	1	3222	3222		18.324	2.6826	1	168200			39924	103	26909	27011	40424	40424					-0.06576464599311294
STVIHLPSK	9	Unmodified	_STVIHLPSK_					0	0	0			REV__tr|U7SRF4|U7SRF4_FUSNUGlycosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01644PE=4SV=1	REV__tr|U7SRF4|U7SRF4_FUSNUGlycosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01644PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.28955078125	2	491.290017	980.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.804	1	25.804	25.304	26.304	0								0	0	0	0.27939	1	8258	8258		39.253	3.6345	1		+		39925	21849	26910	27012	40425	40425					0.07442046822905013
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.793212890625	2	532.792066	1063.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.041	1	13.041	12.541	13.541	0								0	0	0	0.22075	1	2534	2534		47.96	12.341	1				39926	10960	26911	27013	40426	40426					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.5303649902344	3	355.53047	1063.56958	0.71457	0.00025405	-1.1675	-0.00041509	-0.45296	-0.00016104	355.5300968102931	13.306	0.16335	13.306	13.265	13.428	0					8	4	3	0	0	0	0.33044	1	3011	3011		72.879	32.821	1	614790			39927	10960	26911	27013	40427	40427					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7932739257812	2	532.792066	1063.56958	-0.35341	-0.00018829	2.0659	0.0011007	1.7125	0.00091243	532.7934370852751	13.112	0.096818	13.112	13.057	13.154	0					10	5	3	0	0	0	0.16806	1	2663	2663		65.465	13.166	1	192930			39928	10960	26911	27013	40428	40428					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7923583984375	2	532.792066	1063.56958	1.7265	0.00091986	-2.7296	-0.0014543	-1.0031	-0.00053443	532.7915085535354	13.289	0.24269	13.289	13.19	13.433	0					13	5	4	0	0	0	0.0047071	1	3210	3210		159.28	45.864	1	2396500			39929	10960	26911	27013	40429	40429					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	355.5304870605469	3	355.53047	1063.56958	1.4391	0.00051163	-1.3925	-0.00049506	0.046614	1.6573E-05	355.5299720732052	13.289	0.11445	13.289	13.234	13.348	0					4	2	2	0	0	0	0.42902	1	3212	3212		63.534	24.281	1	1585800			39930	10960	26911	27013	40430	40430					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7922973632812	2	532.792066	1063.56958	1.1424	0.00060864	-0.3935	-0.00020965	0.74887	0.00039899	532.7919232095742	13.064	0.11058	13.064	12.97	13.081	0					8	5	3	0	0	0	0.04067	1	2597	2597		98.582	10.886	1	93762			39931	10960	26911	27013	40431	40431					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	355.8648681640625	3	355.53047	1063.56958	-0.08546	-3.0384E-05	0.51556	0.0001833	0.4301	0.00015291	355.8650067141731	13.047	0.053423	13.047	13.028	13.081	0					4	2	2	0	0	0	0.39215	1	2599	2599		67.494	28.74	1	79139			39932	10960	26911	27013	40432	40432					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.530517578125	3	355.53047	1063.56958	1.4138	0.00050265	-1.7252	-0.00061335	-0.31137	-0.0001107	355.52995357836323	13.297	0.1561	13.297	13.193	13.349	0					7	3	3	0	0	0	0.17854	1	3042	3042		90.601	37.004	1	322870			39933	10960	26911	27013	40433	40433					0.040337682542940456
STVKENMKK	9	Unmodified	_STVKENMKK_					0	0	0		ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7925415039062	2	532.792066	1063.56958	1.7681	0.00094204	-2.2127	-0.0011789	-0.44455	-0.00023685	532.7916014852995	13.291	0.29405	13.291	13.143	13.437	0					18	6	5	0	0	0	0.07136	1	3061	3061		87.696	10.379	1	998770			39934	10960	26911	27013	40434	40434					0.040337682542940456
STVLPLYAK	9	Unmodified	_STVLPLYAK_					0	0	0		nc|ENSG00000180739|Q9H228-2|S1PR5;ENSG00000267534|ENST00000646641|S1PR2;ENSG00000180739|ENST00000333430|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2946472167969	2	496.294768	990.574983	-0.68056	-0.00033776	1.2712	0.0006309	0.59065	0.00029314	496.29516515287645	36.055	0.11897	36.055	35.979	36.098	0					4	2	2	0	0	0	0.2873	1	13981	13981		51.335	3.4199	1	69497			39935	6814	26912	27014	40435	40435					0.07931815108429419
STVLSKNRS	9	Unmodified	_STVLSKNRS_					0	0	0		UBR2|p.F1143C|1|0.35|ENSG00000024048|chr6:42659841-42659841|T/G|missense_variant;nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	UBR2|p.F1143C|1|0.35|ENSG00000024048|chr6:42659841-42659841|T/G|missense_variant	UBR2|p.F1143C|1|0.35|ENSG00000024048|chr6:42659841-42659841|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.28179931640625	2	496.28018	990.545808	0.96173	0.00047729	2.0465	0.0010156	3.0082	0.0014929	496.2816539111793	36.124	0.21681	36.124	36.064	36.281	0					8	4	2	0	0	0	0.27249	1	14022	14022		52.937	6.9645	1	444040			39936	1124	26913	27015	40436	40436					0.050156708121335214
STVNKWTLK	9	Unmodified	_STVNKWTLK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.8095092773438	2	538.808574	1075.60259	1.5161	0.00081687	-0.70091	-0.00037765	0.81515	0.00043921	538.8081802292462	25.588	0.42296	25.588	25.497	25.92	0					22	10	3	0	0	0	0.01077	1	7700	7700		134.77	59.722	1	501840			39937	2863	26914	27016	40437	40437					0.06781718368642942
STVNKWTLK	9	Unmodified	_STVNKWTLK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.5413818359375	3	359.541475	1075.60259	0.44825	0.00016116	-0.67196	-0.0002416	-0.22371	-8.0434E-05	359.5412666514538	25.584	0.13354	25.584	25.524	25.658	0					6	4	2	0	0	0	0.36892	1	7718	7718		44.377	9.2252	1	88361			39938	2863	26914	27016	40438	40438					0.06781718368642942
STVNKWTLK	9	Unmodified	_STVNKWTLK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.8089599609375	2	538.808574	1075.60259	2.0136	0.001085	-1.0856	-0.00058491	0.92805	0.00050004	538.807857883843	25.877	0.67928	25.877	25.744	26.423	0					37	14	5	0	0	0	5.0377E-13	1	8866	8866		218.73	136.43	1	4673900			39939	2863	26914	27016	40439	40439					0.06781718368642942
STVNKWTLK	9	Unmodified	_STVNKWTLK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.8089599609375	2	538.808574	1075.60259	-0.20068	-0.00010813	1.2984	0.00069957	1.0977	0.00059144	538.8092232797479	25.625	0.20894	25.625	25.562	25.771	0					9	6	2	0	0	0	0.024086	1	7999	7999		109.44	38.623	1	277490			39940	2863	26914	27016	40440	40440					0.06781718368642942
STVNKWTLK	9	Unmodified	_STVNKWTLK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.5417175292969	3	359.541475	1075.60259	0.40657	0.00014618	-0.44454	-0.00015983	-0.037972	-1.3652E-05	359.5414707365527	25.681	0.14795	25.681	25.619	25.767	0					5	3	2	0	0	0	0.47473	1	8203	8203		35.152	2.4015	1	100400			39941	2863	26914	27016	40441	40441					0.06781718368642942
STVNKWTLK	9	Unmodified	_STVNKWTLK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.808837890625	2	538.808574	1075.60259	1.0082	0.00054324	-0.17015	-9.1676E-05	0.83809	0.00045157	538.8083649798918	25.695	0.30801	25.695	25.608	25.916	0					11	5	3	0	0	0	3.6574E-08	1	8216	8216		185.72	108.94	1	774950			39942	2863	26914	27016	40442	40442					0.06781718368642942
STVNKWTLK	9	Unmodified	_STVNKWTLK_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8090209960938	2	538.808574	1075.60259	2.047	0.001103	-0.72303	-0.00038958	1.324	0.00071339	538.807941513031	25.84	0.69889	25.84	25.65	26.349	0					25	12	4	0	0	0	0.001287	2	9066	9050;9066		164.46	103.48	1	2169100			39943	2863	26914	27016	40443;40444	40444					0.06781718368642942
STVNRVSFS	9	Unmodified	_STVNRVSFS_					0	0	0		ENSG00000255833|ENST00000537858|TIFAB	ENSG00000255833|ENST00000537858|TIFAB	ENSG00000255833|ENST00000537858|TIFAB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.75823974609375	2	498.759081	995.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.424	1	31.424	30.924	31.924	0								0	0	0	0.36609	1	11848	11848		20.947	0.4651	1				39944	8023	26915	27017	40445	40445					0.005676954037653559
STVPAVHQKFT	11	Unmodified	_STVPAVHQKFT_					0	0	0			REV__ENSG00000105447|ENST00000253237|GRWD1	REV__ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	405.5556945800781	3	405.555784	1213.64552	-0.57096	-0.00023156	0.44097	0.00017884	-0.12999	-5.2718E-05	405.55621442647674	29.657	0.21568	29.657	29.549	29.764	0					11	4	3	0	0	0	0.45905	1	10879	10879		47.228	3.5769	1	813340	+		39945	13776	26916	27018	40446	40446					0.04724488426086282
STVPGKVLP	9	Unmodified	_STVPGKVLP_					0	0	0			REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.27392578125	2	449.273835	896.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.143	1	33.143	32.643	33.643	0								0	0	0	0.35899	1	12663	12663		23.042	2.5607	1		+		39946	13235	26917	27019	40447	40447					0.08071259419898524
STVPPSLRK	9	Unmodified	_STVPPSLRK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7952880859375	2	492.795466	983.57638	-1.2658	-0.00062377	1.1055	0.00054479	-0.16027	-7.8981E-05	492.7959547308241	19.089	0.56125	19.089	18.859	19.421	0					33	17	3	0	0	0	0.25716	1	5099	5099		54.776	8.8244	1	367870			39947	7794	26918	27020	40448	40448					0.08393449197183145
STVPPSLRK	9	Unmodified	_STVPPSLRK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.79510498046875	2	492.795466	983.57638	0.60261	0.00029696	-1.2903	-0.00063584	-0.68767	-0.00033888	492.7948896513547	19.322	2.4084	19.322	19.066	21.475	0					87	48	2	0	0	0	0.0071053	1	6079	6079		148.99	52.796	1	2209800			39948	7794	26918	27020	40449	40449					0.08393449197183145
STVPPSLRK	9	Unmodified	_STVPPSLRK_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7952880859375	2	492.795466	983.57638	0.85479	0.00042124	-2.6919	-0.0013265	-1.8371	-0.00090531	492.7940108196809	19.284	0.56003	19.284	19.031	19.591	0					32	11	4	0	0	0	0.078509	1	5943	5943		85.161	13.283	1	1781500			39949	7794	26918	27020	40450	40450					0.08393449197183145
STVPTRAFK	9	Unmodified	_STVPTRAFK_					0	0	0			REV__nc|ENSG00000274487|A6NEC2-2|NPEPPSL1	REV__nc|ENSG00000274487|A6NEC2-2|NPEPPSL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.7845458984375	2	503.787641	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.334	1	21.334	20.834	21.834	0								0	0	0	0.082437	1	6107	6107		76.774	12.567	1		+		39950	21251	26919	27021	40451	40451					0.058171626801254206
STVQGSNIFER	11	Unmodified	_STVQGSNIFER_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	619.3123779296875	2	619.312209	1236.60986	-0.072546	-4.4929E-05	0.016468	1.0199E-05	-0.056078	-3.473E-05	619.3122266857567	32.424	0.21191	32.424	32.331	32.543	0					11	5	3	0	0	0	0.054579	1	11910	11910		102.95	48.232	1	232100			39951	3346	26920	27022	40452	40452					0.0010240617841645872
STVQGSNIFER	11	Unmodified	_STVQGSNIFER_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	619.8141479492188	2	619.312209	1236.60986	0.20622	0.00012772	-0.19914	-0.00012333	0.0070875	4.3894E-06	619.3120853882851	32.431	0.18108	32.431	32.343	32.524	0					8	4	3	0	0	0	0.41029	1	12321	12321		50.791	10.013	1	108060			39952	3346	26920	27022	40453	40453					0.0010240617841645872
STVQILGAEK	10	Unmodified	_STVQILGAEK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2980346679688	2	523.298039	1044.58152	1.4923	0.0007809	-0.65231	-0.00034135	0.83995	0.00043954	523.2975420939514	29.971	0.20507	29.971	29.868	30.073	0					15	7	3	0	0	0	0.026439	1	9506	9506		120.63	32.454	1	204650			39953	1277;2114;10004	26921	27023	40454	40454					0.06101708269147821
STVQILGAEK	10	Unmodified	_STVQILGAEK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2987060546875	2	523.298039	1044.58152	0.48757	0.00025515	-0.049342	-2.5821E-05	0.43823	0.00022933	523.2981743831876	30.024	0.21926	30.024	29.927	30.146	0					19	8	3	0	0	0	0.27396	1	9813	9813		70.412	13.978	1	324420			39954	1277;2114;10004	26921	27023	40455	40455					0.06101708269147821
STVQILGAEK	10	Unmodified	_STVQILGAEK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENSG00000055044|ENST00000264279|NOP58;ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.29833984375	2	523.298039	1044.58152	1.1059	0.00057873	-0.7388	-0.00038661	0.36713	0.00019212	523.2975540545217	30.027	0.22929	30.027	29.929	30.158	0					11	5	3	0	0	0	0.099683	1	10183	10183		95.483	28.521	1	323750			39955	1277;2114;10004	26921	27023	40456	40456					0.06101708269147821
STVRGFYK	8	Unmodified	_STVRGFYK_					0	0	0		tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1	tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1	tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2604064941406	2	479.261259	956.507966	0.024116	1.1558E-05	-1.2691	-0.00060824	-1.245	-0.00059668	479.260587925545	31.553	0.13209	31.553	31.466	31.598	0					9	5	2	0	0	0	0.76283	1	10139	10139		25.45	25.45	1	66571			39956	23054	26922	27024	40457	40457					0.02797204617331772
STVRHARF	8	Unmodified	_STVRHARF_					0	0	0			REV__nc|ENSG00000164898|Q96HJ9-2|FMC1	REV__nc|ENSG00000164898|Q96HJ9-2|FMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2692565917969	2	487.26995	972.525347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.479	1	21.479	20.979	21.979	0								0	0	0	1.7419	1	5923	5923		30.504	0	1		+		39957	21099	26923	27025	40458	40458					0.03798544942992521
STVRQNVNK	9	Unmodified	_STVRQNVNK_					0	0	0		ENST00000418195.1_1_3:42018516-42019344:+|nuORF;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;ENSG00000092208|ENST00000308317|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2919311523438	2	523.291079	1044.56761	1.7146	0.00089722	-0.43175	-0.00022593	1.2828	0.00067129	523.2908677925741	13.691	0.13056	13.691	13.624	13.755	0					9	3	4	0	0	0	0.095583	1	3171	3171		80.455	11.668	1	595140			39958	1872	26924	27026	40459	40459					0.04710475560705163
STVRQNVNK	9	Unmodified	_STVRQNVNK_					0	0	0		ENST00000418195.1_1_3:42018516-42019344:+|nuORF;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;ENSG00000092208|ENST00000308317|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2913818359375	2	523.291079	1044.56761	1.0372	0.00054277	-0.4587	-0.00024003	0.57852	0.00030273	523.2908756257906	13.662	0.11304	13.662	13.608	13.721	0					4	2	2	0	0	0	0.032052	1	3385	3385		107.01	30.233	1	238000			39959	1872	26924	27026	40460	40460					0.04710475560705163
STVRQNVNK	9	Unmodified	_STVRQNVNK_					0	0	0		ENST00000418195.1_1_3:42018516-42019344:+|nuORF;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;ENSG00000092208|ENST00000308317|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2914428710938	2	523.291079	1044.56761	0.46769	0.00024474	0.1716	8.9797E-05	0.63929	0.00033453	523.2912114467946	13.629	0.20776	13.629	13.524	13.732	0					6	4	2	0	0	0	0.07136	1	3218	3218		87.696	15.819	1	903550			39960	1872	26924	27026	40461	40461					0.04710475560705163
STVRQNVNK	9	Unmodified	_STVRQNVNK_					0	0	0		ENST00000418195.1_1_3:42018516-42019344:+|nuORF;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;ENSG00000092208|ENST00000308317|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2910766601562	2	523.291079	1044.56761	1.6255	0.00085061	-1.4578	-0.00076287	0.16768	8.7745E-05	523.2902292884809	13.612	0.20969	13.612	13.557	13.766	0					8	4	3	0	0	0	0.10915	1	3210	3210		77.318	2.2743	1	884010			39961	1872	26924	27026	40462	40462					0.04710475560705163
STVSADPVVK	10	Unmodified	_STVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.77740478515625	2	501.776939	1001.53933	1.6369	0.00082135	-0.68916	-0.0003458	0.94773	0.00047555	501.7765889687588	23.672	0.24496	23.672	23.575	23.82	0					16	8	3	0	0	0	0.018513	1	6861	6861		126.24	38.066	1	431970			39962	4050	26925	27027	40463	40463					0.038617328607642776
STVSADPVVK	10	Unmodified	_STVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.77740478515625	2	501.776939	1001.53933	0.60673	0.00030444	-0.67398	-0.00033819	-0.067256	-3.3747E-05	501.7765118400442	23.981	0.27172	23.981	23.846	24.118	0					21	6	5	0	0	0	0.011271	1	7987	7987		138.06	52.902	1	4265400			39963	4050	26925	27027	40464	40464					0.038617328607642776
STVSADPVVK	10	Unmodified	_STVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7765808105469	2	501.776939	1001.53933	3.5137	0.0017631	-2.9544	-0.0014825	0.55922	0.0002806	501.77573797573484	23.681	0.13816	23.681	23.619	23.757	0					6	4	2	0	0	0	0.14151	1	7157	7157		88.177	15.298	1	64493			39964	4050	26925	27027	40465	40465					0.038617328607642776
STVSADPVVK	10	Unmodified	_STVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.77679443359375	2	501.776939	1001.53933	0.041945	2.1047E-05	0.32506	0.00016311	0.367	0.00018415	501.7772016574739	23.893	0.46736	23.893	23.612	24.079	0					12	8	3	0	0	0	0.018513	1	8293	8293		126.24	58.749	1	773810			39965	4050	26925	27027	40466	40466					0.038617328607642776
STVSSSKRK	9	Unmodified	_STVSSSKRK_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.29217529296875	2	490.28018	978.545808	-0.48053	-0.00023559	-1.1514	-0.00056451	-1.6319	-0.00080011	490.27975873496945	12.114	0.21534	12.114	11.999	12.215	0					14	7	3	0	0	0	0.44593	1	2466	2466		37.812	11.119	1	499240	+		39966	17039	26926	27028	40467	40467					0.05567670812149572
STVTPSSAL	9	Unmodified	_STVTPSSAL_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.7292175292969	2	431.729458	861.444362	0.75516	0.00032602	-1.1078	-0.00047829	-0.35269	-0.00015226	431.7289644847922	32.429	0.29223	32.429	32.262	32.555	0					16	7	3	0	0	0	0.03984	1	11899	11899		99.375	17.07	1	232930			39967	3057	26927	27029	40468	40468					0.008097993895603395
STVTPSSAL	9	Unmodified	_STVTPSSAL_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.7287292480469	2	431.729458	861.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.449	1	32.449	31.949	32.949	0								0	0	0	0.15451	1	12334	12334		58.782	19.529	1				39968	3057	26927	27029	40469	40469					0.008097993895603395
STVTPSSAL	9	Unmodified	_STVTPSSAL_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7296142578125	2	431.729458	861.444362	-0.47314	-0.00020427	0.46153	0.00019925	-0.011615	-5.0146E-06	431.7296891781441	32.412	0.32016	32.412	32.219	32.54	0					16	6	3	0	0	0	0.036372	1	12215	12215		102.77	8.7669	1	185840			39969	3057	26927	27029	40470	40470					0.008097993895603395
STVVGTSTAV	10	Unmodified	_STVVGTSTAV_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2473449707031	2	461.248015	920.481476	-0.4606	-0.00021245	0.11639	5.3686E-05	-0.34421	-0.00015876	461.24773912971625	25.676	0.31568	25.676	25.464	25.78	0					13	5	3	0	0	0	0.26198	1	9006	9006		71.877	7.6702	1	323580	+		39970	13080	26928	27030	40471	40471					0.018054709353350518
STVVLQSPQQ	10	Unmodified	_STVVLQSPQQ_					0	0	0		nc|ENSG00000048991|Q15032-2|R3HDM1;R3HDM1|p.A971Lfs*26|1|0.4|ENSG00000048991|chr2:135722514-135722514|A/-|frameshift_variant;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7952880859375	2	543.793121	1085.57169	3.6556	0.0019879	0.30469	0.00016569	3.9603	0.0021536	543.7932498571804	34.934	0.611	34.934	34.651	35.262	0					32	12	4	0	0	0	0.26198	1	13461	13461		71.877	2.2498	1	2073300			39971	1235	26929	27031	40472	40472					0.032325202637593975
STWEGIQAGK	10	Unmodified	_STWEGIQAGK_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7716064453125	2	538.772188	1075.52982	2.0212	0.0010889	-2.8046	-0.001511	-0.78343	-0.00042209	538.7705513197747	30.014	0.1649	30.014	29.933	30.098	0					11	4	3	0	0	0	0.45669	1	10787	10787		50.034	16.112	1	377910			39972	6649	26930	27032	40473	40473					-0.0049203542478153395
STWEGIQAGK	10	Unmodified	_STWEGIQAGK_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.7717895507812	2	538.772188	1075.52982	-0.19482	-0.00010496	0.36976	0.00019922	0.17494	9.4255E-05	538.7723055923944	29.778	0.15675	29.778	29.725	29.882	0					13	6	3	0	0	0	0.54861	1	9721	9721		40.058	7.2458	1	144190			39973	6649	26930	27032	40474	40474					-0.0049203542478153395
STWEGIQAGK	10	Unmodified	_STWEGIQAGK_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7724609375	2	538.772188	1075.52982	1.9252	0.0010373	-1.6075	-0.00086608	0.31772	0.00017118	538.7713317167479	30.05	0.1988	30.05	29.949	30.148	0					10	4	3	0	0	0	0.31894	1	11205	11205		65.157	24.379	1	801080			39974	6649	26930	27032	40475	40475					-0.0049203542478153395
STWEGIQAGK	10	Unmodified	_STWEGIQAGK_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7726440429688	2	538.772188	1075.52982	1.005	0.00054148	-1.1572	-0.00062346	-0.15217	-8.1985E-05	538.7717047493313	29.806	0.15024	29.806	29.726	29.876	0					8	4	2	0	0	0	0.56063	1	10098	10098		38.754	7.2238	1	96047			39975	6649	26930	27032	40476	40476					-0.0049203542478153395
STWEGIQAGK	10	Unmodified	_STWEGIQAGK_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.7730102539062	2	538.772188	1075.52982	-1.4634	-0.00078847	2.2943	0.0012361	0.83082	0.00044762	538.773840550717	29.801	0.14844	29.801	29.717	29.865	0					6	4	2	0	0	0	0.35046	1	10076	10076		61.691	17.574	1	92583			39976	6649	26930	27032	40477	40477					-0.0049203542478153395
STWEGIQAGK	10	Unmodified	_STWEGIQAGK_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.772216796875	2	538.772188	1075.52982	3.3971	0.0018303	-2.6689	-0.0014379	0.72825	0.00039236	538.7706981783198	29.971	0.16883	29.971	29.862	30.031	0					9	3	3	0	0	0	0.022799	1	11057	11057		123.21	32.838	1	605820			39977	6649	26930	27032	40478	40478					-0.0049203542478153395
STWVIRGR	8	Unmodified	_STWVIRGR_					0	0	0		ENST00000534047.5_1_11:10503676-10517278:+|nuORF	ENST00000534047.5_1_11:10503676-10517278:+|nuORF	ENST00000534047.5_1_11:10503676-10517278:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7799072265625	2	487.780151	973.545748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.38	1	35.38	34.88	35.88	0								0	0	0	1.7419	1	11599	11599		44.117	6.3053	1				39978	10470	26931	27033	40479	40479					0.057917156028111094
STYAAGVIST	10	Unmodified	_STYAAGVIST_					0	0	0			REV__tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	REV__tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.2476806640625	2	485.248015	968.481476	-0.091286	-4.4296E-05	-0.95423	-0.00046304	-1.0455	-0.00050733	485.2475452135869	21.154	0.36119	21.154	20.98	21.341	0					13	7	3	0	0	0	0.52707	1	6946	6946		42.396	1.618	1	522390	+		39979	22187	26932	27034	40480	40480					-0.004025290646723079
STYATTIRDSK	11	Unmodified	_STYATTIRDSK_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000531020.1_1_1:1249679-1250311:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	621.820068359375	2	621.819867	1241.62518	0.17903	0.00011133	-1.3098	-0.00081444	-1.1307	-0.00070312	621.8189086738261	20.765	0.14151	20.765	20.69	20.832	0					7	5	2	0	0	0	0.12257	1	5606	5606		94.409	50.032	1	124420			39980	3496	26933	27035	40481	40481					0.014032729756081608
STYATTIRDSK	11	Unmodified	_STYATTIRDSK_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000531020.1_1_1:1249679-1250311:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	621.8201293945312	2	621.819867	1241.62518	0.32443	0.00020173	0.019315	1.2011E-05	0.34374	0.00021375	621.8200165121605	21.049	0.17571	21.049	20.959	21.135	0					10	4	3	0	0	0	0.00013565	1	6636	6636		150.81	81.183	1	952460			39981	3496	26933	27035	40482	40482					0.014032729756081608
STYATTIRDSK	11	Unmodified	_STYATTIRDSK_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000531020.1_1_1:1249679-1250311:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.8822021484375	3	414.882337	1241.62518	-0.37198	-0.00015433	0.020121	8.3479E-06	-0.35186	-0.00014598	414.88229506104085	21	0.21819	21	20.891	21.11	0					11	4	4	0	0	0	0.55968	1	6756	6756		39.873	15.641	1	1018200			39982	3496	26933	27035	40483	40483					0.014032729756081608
STYATTIRDSK	11	Unmodified	_STYATTIRDSK_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000531020.1_1_1:1249679-1250311:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	621.8209228515625	2	621.819867	1241.62518	3.1206	0.0019404	-1.578	-0.00098123	1.5426	0.00095921	621.8188455974339	20.968	0.16583	20.968	20.86	21.025	0					7	3	3	0	0	0	9.7956E-06	1	6762	6762		174.86	95.414	1	1084600			39983	3496	26933	27035	40484	40484					0.014032729756081608
STYEQVDLIGK	11	Unmodified	_STYEQVDLIGK_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	626.8244018554688	2	626.824618	1251.63468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.096	1	36.096	35.596	36.596	0								0	0	0	0.37035	1	12223	12223		42.338	5.8913	1				39984	5826	26934	27036	40485	40485					0.018930412611325664
STYEQVDLIGK	11	Unmodified	_STYEQVDLIGK_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	626.8248901367188	2	626.824618	1251.63468	1.3709	0.00085934	-1.1363	-0.00071223	0.23469	0.00014711	626.8240552059893	36.246	0.18848	36.246	36.172	36.36	0					12	5	3	0	0	0	7.5003E-05	1	14116	14116		147.3	77.676	1	342630			39985	5826	26934	27036	40486	40486					0.018930412611325664
STYEQVDLIGK	11	Unmodified	_STYEQVDLIGK_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	626.8248291015625	2	626.824618	1251.63468	0.25016	0.00015681	0.016214	1.0164E-05	0.26637	0.00016697	626.8247393646514	36.225	0.21373	36.225	36.115	36.329	0					10	4	3	0	0	0	0.047958	1	14070	14070		106.16	49.723	1	392840			39986	5826	26934	27036	40487	40487					0.018930412611325664
STYFERCLK	9	Unmodified	_STYFERCLK_					0	0	0		ENSG00000130725|ENST00000253023|UBE2M	ENSG00000130725|ENST00000253023|UBE2M	ENSG00000130725|ENST00000253023|UBE2M	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	382.85845947265625	3	382.858586	1145.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.438	1	31.438	30.938	31.938	0								0	0	0	0.34845	1	10106	10106		25.574	0.44807	1				39987	3664	26935	27037	40488	40488					-0.013025182627643517
STYGTHIHEK	10	Unmodified	_STYGTHIHEK_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	586.78857421875	2	586.78837	1171.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.374	1	16.374	15.874	16.874	0								0	0	0	0.017278	1	4423	4423		114.89	16.265	1				39988	3101	26936	27038	40489	40489					-0.0167324802175699
STYGTHIHEK	10	Unmodified	_STYGTHIHEK_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.788818359375	2	586.78837	1171.56219	-0.34699	-0.00020361	0.78518	0.00046073	0.43819	0.00025712	586.7892557994519	16.098	0.12603	16.098	16.011	16.137	0					10	4	3	0	0	0	0.12383	1	3791	3791		91.265	6.1044	1	120730			39989	3101	26936	27038	40490	40490					-0.0167324802175699
STYGTHIHEK	10	Unmodified	_STYGTHIHEK_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.7883911132812	2	586.78837	1171.56219	1.4283	0.00083814	-1.2368	-0.00072576	0.19152	0.00011238	586.7875997336315	16.322	0.21736	16.322	16.213	16.43	0					11	4	3	0	0	0	0.05785	1	4655	4655		106.68	55.348	1	1826500			39990	3101	26936	27038	40491	40491					-0.0167324802175699
STYGTHIHEK	10	Unmodified	_STYGTHIHEK_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	586.789306640625	2	586.78837	1171.56219	-1.7424	-0.0010224	3.1447	0.0018453	1.4024	0.00082289	586.7900443225369	16.121	0.1387	16.121	16.056	16.195	0					9	4	3	0	0	0	0.022799	1	3758	3758		123.21	16.201	1	249080			39991	3101	26936	27038	40492	40492					-0.0167324802175699
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7582092285156	2	470.758549	939.502546	-0.42689	-0.00020096	-0.1696	-7.9839E-05	-0.59648	-0.0002808	470.7584428421391	15.274	0.35299	15.274	15.195	15.548	0					24	13	4	0	0	0	0.035106	1	3282	3282		104.01	38.21	1	2652200			39992	7818	26937	27039	40493	40493					0.03037481034857592
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7587585449219	2	470.758549	939.502546	-0.61122	-0.00028774	0.193	9.0858E-05	-0.41821	-0.00019688	470.75876077747984	15.565	0.21867	15.565	15.478	15.697	0					15	5	4	0	0	0	0.019258	1	4036	4036		123.21	67.704	1	20926000			39993	7818	26937	27039	40494	40494					0.03037481034857592
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.7582702636719	2	470.758549	939.502546	-1.3205	-0.00062162	0.73294	0.00034504	-0.58752	-0.00027658	470.7588571449452	15.314	0.26071	15.314	15.233	15.494	0					15	8	4	0	0	0	0.019258	1	3458	3458		123.21	57.405	1	737130			39994	7818	26937	27039	40495	40495					0.03037481034857592
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.7584228515625	2	470.758549	939.502546	-0.85069	-0.00040047	0.6354	0.00029912	-0.21529	-0.00010135	470.75886480373623	15.309	0.12851	15.309	15.219	15.348	0					8	3	3	0	0	0	0.035062	1	3468	3468		104.06	61.582	1	533590			39995	7818	26937	27039	40496	40496					0.03037481034857592
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.75823974609375	2	470.758549	939.502546	-0.85752	-0.00040368	0.050284	2.3672E-05	-0.80724	-0.00038001	470.7586138631009	15.558	0.36757	15.558	15.451	15.818	0					13	7	4	0	0	0	0.026538	1	4289	4289		112.41	61.075	1	1765100			39996	7818	26937	27039	40497	40497					0.03037481034857592
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.75830078125	2	470.758549	939.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.498	1	15.498	14.998	15.998	0								0	0	0	0.0016356	1	4099	4099		123.21	67.704	1				39997	7818	26937	27039	40498	40498					0.03037481034857592
STYIILVLK	9	Unmodified	_STYIILVLK_					0	0	0		ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.334716796875	2	525.333893	1048.65323	3.4435	0.001809	-2.5857	-0.0013584	0.85779	0.00045062	525.3325711933988	48.154	0.14728	48.154	48.09	48.238	0					13	7	2	0	0	0	0.087861	1	19150	19150		82.241	53.091	1	84780			39998	8148	26938	27040	40499	40499					0.1308524769365249
STYKEAFRK	9	Unmodified	_STYKEAFRK_					0	0	0		ENSG00000163344|ENST00000368467|PMVK	ENSG00000163344|ENST00000368467|PMVK	ENSG00000163344|ENST00000368467|PMVK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.20526123046875	3	377.204862	1128.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.837	1	17.837	17.337	18.337	0								0	0	0	0.20989	1	4334	4334		49.536	18.006	1				39999	5544	26939	27041	40500	40500					0.03360530363283942
STYKEAFRK	9	Unmodified	_STYKEAFRK_					0	0	0		ENSG00000163344|ENST00000368467|PMVK	ENSG00000163344|ENST00000368467|PMVK	ENSG00000163344|ENST00000368467|PMVK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.2048034667969	3	377.204862	1128.59276	0.80804	0.0003048	-0.47167	-0.00017791	0.33638	0.00012688	377.2045236427746	18.134	0.31588	18.134	18.037	18.353	0					17	7	4	0	0	0	0.44593	1	5260	5260		37.812	4.9991	1	1285900			40000	5544	26939	27041	40501	40501					0.03360530363283942
STYKEAFRK	9	Unmodified	_STYKEAFRK_					0	0	0		ENSG00000163344|ENST00000368467|PMVK	ENSG00000163344|ENST00000368467|PMVK	ENSG00000163344|ENST00000368467|PMVK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.2046813964844	3	377.204862	1128.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.111	1	18.111	17.611	18.611	0								0	0	0	0.20989	1	5356	5356		49.536	19.218	1				40001	5544	26939	27041	40502	40502					0.03360530363283942
STYLGIHER	9	Unmodified	_STYLGIHER_					0	0	0		ENSG00000277462|ENST00000366503|ZNF670	ENSG00000277462|ENST00000366503|ZNF670	ENSG00000277462|ENST00000366503|ZNF670	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2802734375	2	538.28018	1074.54581	0.29784	0.00016032	-0.14545	-7.8294E-05	0.15239	8.203E-05	538.279984400934	25.18	0.27015	25.18	25.122	25.392	0					6	5	2	0	0	0	0.18416	1	8917	8917		63.534	6.8128	1	166350			40002	8117	26940	27042	40503	40503					0.011516708121462216
STYLPLEARAA	11	Unmodified	_STYLPLEARAA_					0	0	0		ENST00000571572.2_1_17:6353382-6353613:+|nuORF	ENST00000571572.2_1_17:6353382-6353613:+|nuORF	ENST00000571572.2_1_17:6353382-6353613:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.3206787109375	2	596.322045	1190.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.873	1	15.873	15.373	16.373	0								0	0	0	0.43806	1	3702	3702		13.454	0	1				40003	10804	26941	27043	40504	40504					0.04184782189190628
STYMDRVFK	9	Unmodified	_STYMDRVFK_					0	0	0		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.8584289550781	3	382.858586	1145.55393	0.83634	0.0003202	-0.81751	-0.00031299	0.018835	7.2113E-06	382.85831079505977	31.628	0.33926	31.628	31.531	31.871	0					19	8	3	0	0	0	0.48389	1	11522	11522		34.173	1.422	1	292480			40004	5250	26942	27044	40505	40505					-0.013025182627416143
STYNPSISLK	10	Unmodified	_STYNPSISLK_					0	0	0		ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2957153320312	2	555.295496	1108.57644	0.58664	0.00032576	0.33248	0.00018463	0.91913	0.00051039	555.2954245379339	31.936	0.33467	31.936	31.764	32.099	0					16	8	3	0	0	0	0.073361	1	11683	11683		101.46	35.994	1	275020			40005	9920	26943	27045	40506	40506					0.026494044065202615
STYNPSISLK	10	Unmodified	_STYNPSISLK_					0	0	0		ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.2960205078125	2	555.295496	1108.57644	-0.076003	-4.2204E-05	0.70069	0.00038909	0.62469	0.00034689	555.2962028901998	31.937	0.16361	31.937	31.827	31.99	0					7	3	3	0	0	0	0.3029	1	12079	12079		66.92	13.831	1	90242			40006	9920	26943	27045	40507	40507					0.026494044065202615
STYNPSISLK	10	Unmodified	_STYNPSISLK_					0	0	0		ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.2957153320312	2	555.295496	1108.57644	-1.0699	-0.00059408	2.0082	0.0011152	0.93839	0.00052109	555.2964335527516	31.702	0.088255	31.702	31.658	31.746	0					4	2	2	0	0	0	0.5276	1	10955	10955		42.338	11.834	1	47945			40007	9920	26943	27045	40508	40508					0.026494044065202615
STYPAQNGQVK	11	Unmodified	_STYPAQNGQVK_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;PTPRC|p.N1239Tfs*17|1|0.43|ENSG00000081237|chr1:198755972-198755972|A/-|frameshift_variant;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.8012084960938	2	596.801477	1191.5884	0.1347	8.0388E-05	-0.2397	-0.00014306	-0.10501	-6.2668E-05	596.8010927955589	19.579	0.1191	19.579	19.486	19.605	0					5	3	2	0	0	0	0.37057	1	5090	5090		54.722	18.276	1	73235			40008	1658	26944	27046	40509	40509					0.0002702114970816183
STYPAQNGQVK	11	Unmodified	_STYPAQNGQVK_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;PTPRC|p.N1239Tfs*17|1|0.43|ENSG00000081237|chr1:198755972-198755972|A/-|frameshift_variant;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	596.8016357421875	2	596.801477	1191.5884	0.085209	5.0853E-05	-0.091644	-5.4693E-05	-0.0064356	-3.8408E-06	596.801441316467	19.911	0.19778	19.911	19.773	19.971	0					9	4	3	0	0	0	0.38515	1	6104	6104		53.089	11.662	1	536580			40009	1658	26944	27046	40510	40510					0.0002702114970816183
STYPAQNGQVK	11	Unmodified	_STYPAQNGQVK_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;PTPRC|p.N1239Tfs*17|1|0.43|ENSG00000081237|chr1:198755972-198755972|A/-|frameshift_variant;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.8023071289062	2	596.801477	1191.5884	-0.55918	-0.00033372	1.1755	0.00070152	0.61628	0.0003678	596.8027193649525	19.59	0.070953	19.59	19.555	19.626	0					4	2	2	0	0	0	0.60656	1	5340	5340		36.447	3.6343	1	65438			40010	1658	26944	27046	40511	40511					0.0002702114970816183
STYPSLIY	8	Unmodified	_STYPSLIY_					0	0	0			REV__tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	REV__tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2398681640625	2	472.242201	942.469849	-0.54686	-0.00025825	-3.6221	-0.0017105	-4.1689	-0.0019687	472.24014355147125	23.258	0.19811	23.258	23.203	23.401	0					7	4	2	0	0	0	0.6282	1	7100	7100		44.531	3.9584	1	94853	+		40011	22028	26945	27047	40512	40512					-0.0036872608799285445
STYRKFSTK	9	Unmodified	_STYRKFSTK_					0	0	0		CDH1|p.P126Rfs*89|3|0.3|ENSG00000039068|chr16:68801878-68801878|C/-|frameshift_variant;CDH1|p.F462Lfs*19|1|0.16|ENSG00000039068|chr16:68815577-68815577|T/-|frameshift_variant;CDH1|p.N315Kfs*6|1|0.32|ENSG00000039068|chr16:68811790-68811791|-/A|frameshift_variant;nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	CDH1|p.P126Rfs*89|3|0.3|ENSG00000039068|chr16:68801878-68801878|C/-|frameshift_variant;CDH1|p.F462Lfs*19|1|0.16|ENSG00000039068|chr16:68815577-68815577|T/-|frameshift_variant;nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.2047119140625	3	373.204862	1116.59276	0.78775	0.00029399	-1.0457	-0.00039025	-0.25793	-9.626E-05	373.2045368482953	16.697	0.13157	16.697	16.62	16.752	0					8	3	3	0	0	0	0.35021	1	4595	4595		61.691	45.685	1	301990			40012	1185;443;444	26946	27048	40513	40513					0.03912530363277256
STYSGQHQR	9	Unmodified	_STYSGQHQR_					0	0	0		INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2495727539062	2	532.249412	1062.48427	0.12451	6.6269E-05	1.0787	0.00057414	1.2032	0.00064041	532.2499391216545	12.657	0.40351	12.657	12.464	12.868	0					20	12	3	0	0	0	0.0016668	1	2702	2702		176.44	99.671	1	1416800			40013	7062	26947	27049	40514	40514					-0.04447260887150151
STYSGQHQR	9	Unmodified	_STYSGQHQR_					0	0	0		INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2503051757812	2	532.249412	1062.48427	3.4102	0.0018151	-1.9791	-0.0010534	1.4311	0.00076172	532.2484998799958	12.646	0.31132	12.646	12.559	12.87	0					12	7	3	0	0	0	0.0016668	1	2746	2746		176.44	102.19	1	1440800			40014	7062	26947	27049	40515	40515					-0.04447260887150151
STYSSQIRK	9	Unmodified	_STYSSQIRK_					0	0	0		nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;ENST00000469130.5_1_1:201751782-201763782:+|nuORF	nc|ENSG00000134369|Q8NEY1-6|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2865600585938	2	535.285463	1068.55637	-0.60968	-0.00032635	3.1927	0.001709	2.583	0.0013826	535.2872287829997	17.471	0.063995	17.471	17.441	17.505	0					4	2	2	0	0	0	0.12278	1	4389	4389		58.23	0	1	122930			40015	11532	26948	27050	40516	40516					0.024836534665837462
STYSSQIRK	9	Unmodified	_STYSSQIRK_					0	0	0		nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;ENST00000469130.5_1_1:201751782-201763782:+|nuORF	nc|ENSG00000134369|Q8NEY1-6|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.285888671875	2	535.285463	1068.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.771	1	17.771	17.271	18.271	0								0	0	0	0.14961	1	5337	5337		44.377	21.798	1				40016	11532	26948	27050	40517	40517					0.024836534665837462
STYSSQIRK	9	Unmodified	_STYSSQIRK_					0	0	0		nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;ENST00000469130.5_1_1:201751782-201763782:+|nuORF	nc|ENSG00000134369|Q8NEY1-6|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2863159179688	2	535.285463	1068.55637	1.0819	0.0005791	-0.32896	-0.00017609	0.7529	0.00040302	535.2853955018253	17.572	0.10777	17.572	17.501	17.609	0					5	3	2	0	0	0	0.10506	1	4404	4404		52.937	28.418	1	87836			40017	11532	26948	27050	40518	40518					0.024836534665837462
STYSSQIRK	9	Unmodified	_STYSSQIRK_					0	0	0		nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;ENST00000469130.5_1_1:201751782-201763782:+|nuORF	nc|ENSG00000134369|Q8NEY1-6|NAV1	nc|ENSG00000134369|Q8NEY1-6|NAV1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2857666015625	2	535.285463	1068.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.754	1	17.754	17.254	18.254	0								0	0	0	0.0020833	1	5180	5180		93.143	27.678	1				40018	11532	26948	27050	40519	40519					0.024836534665837462
STYTPENLLNK	11	Unmodified	_STYTPENLLNK_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	640.33056640625	2	640.330067	1278.64558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.469	1	36.469	35.969	36.969	0								0	0	0	0.2814	1	13758	13758		54.722	1.7857	1				40019	6109	26949	27051	40520	40520					0.017404436354354402
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.7857666015625	2	590.785296	1179.55604	0.12398	7.3248E-05	-0.058033	-3.4285E-05	0.065951	3.8963E-05	590.7853765507174	34.963	0.22723	34.963	34.872	35.099	0					21	9	3	0	0	0	0.12383	1	11433	11433		91.265	50.487	1	164460			40020	900	26950	27052	40521	40521					-0.02655766253269576
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.7858276367188	2	590.785296	1179.55604	0.22461	0.0001327	0.34569	0.00020423	0.5703	0.00033692	590.7853010306029	35.189	0.43393	35.189	35.061	35.495	0					26	11	3	0	0	0	0.010919	1	13165	13165		139.38	65.217	1	1274800			40021	900	26950	27052	40522	40522					-0.02655766253269576
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.7861328125	2	590.785296	1179.55604	-0.49451	-0.00029215	1.085	0.000641	0.59048	0.00034885	590.7853787745663	35.014	0.24026	35.014	34.914	35.154	0					24	10	3	0	0	0	0.38179	1	11817	11817		58.246	20.435	1	198100			40022	900	26950	27052	40523	40523					-0.02655766253269576
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.785400390625	2	590.785296	1179.55604	1.498	0.00088498	-0.71571	-0.00042283	0.78226	0.00046215	590.7846803766209	35.218	0.5818	35.218	35.102	35.684	0					35	16	3	0	0	0	0.0021387	1	13624	13624		174.86	86.688	1	1326700			40023	900	26950	27052	40524	40524					-0.02655766253269576
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.78515625	2	590.785296	1179.55604	-0.10392	-6.1392E-05	0.6427	0.0003797	0.53878	0.0003183	590.785714674887	35.21	0.19584	35.21	35.123	35.318	0					9	5	2	0	0	0	0.46989	1	13620	13620		48.602	12.983	1	142160			40024	900	26950	27052	40525	40525					-0.02655766253269576
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	590.7850341796875	2	590.785296	1179.55604	-1.7759	-0.0010492	2.0832	0.0012307	0.30729	0.00018154	590.7863847099092	34.978	0.28274	34.978	34.909	35.192	0					22	8	3	0	0	0	0.16745	1	12430	12430		83.647	25.836	1	196120			40025	900	26950	27052	40526	40526					-0.02655766253269576
STYYNPSLK	9	Unmodified	_STYYNPSLK_					0	0	0		nc|ENSG00000231475|P0DP07|IGHV4-31;nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2;nc|ENSG00000211959|P01824|IGHV4-39;nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	nc|ENSG00000231475|P0DP07|IGHV4-31	nc|ENSG00000231475|P0DP07|IGHV4-31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7691650390625	2	536.769114	1071.52368	2.1268	0.0011416	-3.4677	-0.0018613	-1.3409	-0.00071976	536.7677716617571	28.213	0.29833	28.213	28.081	28.38	0					18	7	3	0	0	0	0.22823	1	9958	9958		58.246	8.2217	1	449390			40026	11756	26951	27053	40527	40527					-0.009225536563008063
STYYNPSLK	9	Unmodified	_STYYNPSLK_					0	0	0		nc|ENSG00000231475|P0DP07|IGHV4-31;nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2;nc|ENSG00000211959|P01824|IGHV4-39;nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	nc|ENSG00000231475|P0DP07|IGHV4-31	nc|ENSG00000231475|P0DP07|IGHV4-31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7686767578125	2	536.769114	1071.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.148	1	28.148	27.648	28.648	0								0	0	0	0.30009	1	10164	10164		35.152	1.6364	1				40027	11756	26951	27053	40528	40528					-0.009225536563008063
SVAAAALPQLG	11	Unmodified	_SVAAAALPQLG_					0	0	0			REV__ENST00000596809.5_1_19:41247612-41248383:-|nuORF	REV__ENST00000596809.5_1_19:41247612-41248383:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	333.194091796875	3	333.194075	996.560395	-0.70278	-0.00023416	0.51349	0.00017109	-0.18928	-6.3068E-05	333.1941911676552	30.759	0.2054	30.759	30.635	30.84	0					13	7	3	0	0	0	0.63225	1	10114	10114		34.087	13.249	1	120860	+		40028	20568	26952	27054	40529	40529					0.06197742960284813
SVAAAAVEAK	10	Unmodified	_SVAAAAVEAK_					0	0	0			REV__TRIM55|p.A489V|1|0.4|ENSG00000147573|chr8:66154276-66154276|C/T|missense_variant	REV__TRIM55|p.A489V|1|0.4|ENSG00000147573|chr8:66154276-66154276|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7583312988281	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.952	1	21.952	21.452	22.452	0								0	0	0	0.21707	1	7057	7057		62.107	0	1		+		40029	22237	26953	27055	40530	40530					0.04141481034844219
SVAAALAASG	10	Unmodified	_SVAAALAASG_					0	0	0		ENST00000560302.5_1_15:85923893-85923983:+|nuORF	ENST00000560302.5_1_15:85923893-85923983:+|nuORF	ENST00000560302.5_1_15:85923893-85923983:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.2243957519531	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.072	1	16.072	15.572	16.572	0								0	0	0	0.39244	1	3732	3732		32.812	4.9302	1				40030	10690	26954	27056	40531	40531					0.018572364549868325
SVAAGFPAGQ	10	Unmodified	_SVAAGFPAGQ_					0	0	0		ENST00000528821.5_1_12:16109876-16185684:+|nuORF;ENSG00000023697|ENST00000428559|DERA	ENST00000528821.5_1_12:16109876-16185684:+|nuORF	ENST00000528821.5_1_12:16109876-16185684:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7311706542969	2	452.729792	903.445031	2.5193	0.0011406	0.26522	0.00012007	2.7845	0.0012606	452.7300280960256	19.667	0.51838	19.667	19.409	19.927	0					29	10	4	0	0	0	0.56931	1	6109	6109		37.812	37.812	1	1962300			40031	1122	26955	27057	40532	40532					-0.010553611707223354
SVAAIKALAH	10	Unmodified	_SVAAIKALAH_					0	0	0			REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7969055175781	2	490.798009	979.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.443	1	40.443	39.943	40.943	0								0	0	0	0.4201	1	16058	16058		21.96	0	1		+		40032	15104	26956	27058	40533	40533					0.09085753059775925
SVAALPVCK	9	Carbamidomethyl (C)	_SVAALPVC(Carbamidomethyl (C))K_	SVAALPVC(1)K		SVAALPVC(69)K		0	1	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.76611328125	2	472.76532	943.516088	-0.026791	-1.2666E-05	-0.39967	-0.00018895	-0.42646	-0.00020162	472.76517359711136	27.991	0.16481	27.991	27.882	28.046	0					11	6	2	0	0	0	0.14603	1	8675	8675		68.787	18.762	1	169110			40033	1001	26957	27059	40534	40534	32				0.042070155424539735
SVAALPVCK	9	Carbamidomethyl (C)	_SVAALPVC(Carbamidomethyl (C))K_	SVAALPVC(1)K		SVAALPVC(90)K		0	1	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7651672363281	2	472.76532	943.516088	0.23373	0.0001105	-0.94119	-0.00044496	-0.70747	-0.00033447	472.76498055941323	28.254	0.25815	28.254	28.121	28.38	0					23	6	5	0	0	0	0.063823	1	9956	9956		90.37	8.0648	1	1024300			40034	1001	26957	27059	40535	40535	32				0.042070155424539735
SVAALPVCK	9	Carbamidomethyl (C)	_SVAALPVC(Carbamidomethyl (C))K_	SVAALPVC(1)K		SVAALPVC(69)K		0	1	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7623596191406	2	472.76532	943.516088	-2.467	-0.0011663	-2.4921	-0.0011782	-4.9591	-0.0023445	472.7642403132491	28.028	0.29143	28.028	27.854	28.145	0					12	7	2	0	0	0	0.14603	1	9236	9236		68.787	17.451	1	161730			40035	1001	26957	27059	40536	40536	32				0.042070155424539735
SVAALPVCK	9	Carbamidomethyl (C)	_SVAALPVC(Carbamidomethyl (C))K_	SVAALPVC(1)K		SVAALPVC(96)K		0	1	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.76519775390625	2	472.76532	943.516088	-0.57435	-0.00027153	-0.12887	-6.0925E-05	-0.70322	-0.00033246	472.76573132363274	28.169	0.66331	28.169	27.712	28.375	0					24	13	3	0	0	0	0.047412	1	10185	10185		96.19	30.387	1	579410			40036	1001	26957	27059	40537	40537	32				0.042070155424539735
SVAALPVCK	9	Carbamidomethyl (C)	_SVAALPVC(Carbamidomethyl (C))K_	SVAALPVC(1)K		SVAALPVC(74)K		0	1	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7635192871094	2	472.76532	943.516088	0.64046	0.00030279	-3.655	-0.0017279	-3.0145	-0.0014252	472.76363031642745	28.159	0.51525	28.159	27.894	28.409	0					28	10	6	0	0	0	0.12239	1	10177	10177		74.255	24.231	1	1910700			40037	1001	26957	27059	40538	40538	32				0.042070155424539735
SVAALPVCK	9	Unmodified	_SVAALPVCK_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2547607421875	2	444.254588	886.494624	0.58871	0.00026154	-0.94164	-0.00041833	-0.35293	-0.00015679	444.2543016690853	30.55	0.44264	30.55	30.405	30.848	0					26	10	3	0	0	0	0.24095	1	11013	11013		56.721	0	1	466040			40038	1001	26957	27060	40539	40539					0.04683630513727621
SVAALPVCK	9	Unmodified	_SVAALPVCK_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.25469970703125	2	444.254588	886.494624	-0.21627	-9.6077E-05	-0.63086	-0.00028026	-0.84712	-0.00037634	444.25442033760015	30.521	0.6889	30.521	30.277	30.965	0					32	15	3	0	0	0	0.22377	1	11380	11380		58.782	18.004	1	1432600			40039	1001	26957	27060	40540	40540					0.04683630513727621
SVAALPVCK	9	Unmodified	_SVAALPVCK_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.25433349609375	2	444.254588	886.494624	0.43656	0.00019394	-0.46325	-0.0002058	-0.026686	-1.1856E-05	444.2543277010481	30.31	0.37524	30.31	30.197	30.572	0					13	9	2	0	0	0	0.18605	1	10277	10277		63.306	24.5	1	213490			40040	1001	26957	27060	40541	40541					0.04683630513727621
SVAALPVCK	9	Unmodified	_SVAALPVCK_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.25482177734375	2	444.254588	886.494624	-0.47973	-0.00021312	-0.49411	-0.00021951	-0.97384	-0.00043263	444.2546076895552	30.526	0.74937	30.526	30.294	31.043	0					30	15	3	0	0	0	0.22377	1	11259	11259		58.782	18.209	1	938270			40041	1001	26957	27060	40542	40542					0.04683630513727621
SVAALSEPEGN	11	Unmodified	_SVAALSEPEGN_					0	0	0			REV__ADAMTS8|p.A207Pfs*38|1|0.31|ENSG00000134917|chr11:130427668-130427668|C/-|frameshift_variant	REV__ADAMTS8|p.A207Pfs*38|1|0.31|ENSG00000134917|chr11:130427668-130427668|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2603149414062	2	537.259111	1072.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.747	1	27.747	27.247	28.247	0								0	0	0	0.36657	1	8592	8592		42.864	2.0861	1		+		40042	12075	26958	27061	40543	40543					-0.029683493869015365
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.27703857421875	2	457.276909	912.539266	0.65955	0.0003016	-0.096317	-4.4044E-05	0.56323	0.00025755	457.27674076024323	28.173	0.11378	28.173	28.096	28.21	0					5	3	2	0	0	0	0.36892	1	8762	8762		44.377	20.174	1	69976			40043	6219	26959	27062	40544	40544					0.07949777651424483
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2772216796875	2	457.276909	912.539266	0.21065	9.6327E-05	-0.25948	-0.00011865	-0.048823	-2.2326E-05	457.27679470599065	28.427	0.21221	28.427	28.341	28.553	0					10	5	3	0	0	0	0.11898	1	10035	10035		75.043	32.179	1	563700			40044	6219	26959	27062	40545	40545					0.07949777651424483
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2764892578125	2	457.276909	912.539266	-0.15021	-6.8688E-05	-0.90227	-0.00041259	-1.0525	-0.00048127	457.2765681463336	28.39	0.65398	28.39	28.141	28.795	0					27	13	4	0	0	0	0.30841	1	10381	10381		49.536	15.364	1	1752800			40045	6219	26959	27062	40546	40546					0.07949777651424483
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2764892578125	2	457.276909	912.539266	0.035441	1.6206E-05	-0.90279	-0.00041283	-0.86735	-0.00039662	457.2766887438383	28.211	0.22749	28.211	28.043	28.27	0					13	5	4	0	0	0	0.35021	1	9327	9327		45.972	11.8	1	162470			40046	6219	26959	27062	40547	40547					0.07949777651424483
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2764892578125	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.344	1	28.344	27.844	28.844	0								0	0	0	0.2882	1	10257	10257		37.508	9.2539	1				40047	6219	26959	27062	40548	40548					0.07949777651424483
SVAASVTAK	9	Unmodified	_SVAASVTAK_					0	0	0		ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.2397766113281	2	417.239993	832.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.17	1	19.17	18.67	19.67	0								0	0	0	0.26578	1	5736	5736		41.427	7.505	1				40048	5922	26960	27063	40549	40549					0.04249809489101608
SVACPGAQK	9	Carbamidomethyl (C)	_SVAC(Carbamidomethyl (C))PGAQK_	SVAC(1)PGAQK		SVAC(64)PGAQK		0	1	0		ENSG00000127993|ENST00000265732|RBM48;nc|ENSG00000127993|Q5RL73-2|RBM48	ENSG00000127993|ENST00000265732|RBM48	ENSG00000127993|ENST00000265732|RBM48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2287292480469	2	459.229102	916.443651	0.72221	0.00033166	-1.8606	-0.00085446	-1.1384	-0.0005228	459.2284666144427	15.922	0.51084	15.922	15.719	16.23	0					19	10	3	0	0	0	0.17854	1	4488	4488		64.207	7.4862	1	550200			40049	3526	26961	27064	40550	40550	149				-0.017913185311158486
SVADLAFAH	9	Unmodified	_SVADLAFAH_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7373352050781	2	465.737617	929.460681	0.47945	0.0002233	-0.19693	-9.1717E-05	0.28252	0.00013158	465.7368948835342	38.393	0.232	38.393	38.333	38.565	0					9	7	2	0	0	0	0.16524	1	14596	14596		65.803	16.362	1	132420			40050	1181	26962	27065	40551	40551					-0.006870746536719707
SVADLAFAH	9	Unmodified	_SVADLAFAH_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.73773193359375	2	465.737617	929.460681	-0.13665	-6.3643E-05	1.2059	0.00056161	1.0692	0.00049797	465.73765901427913	38.379	0.15052	38.379	38.311	38.461	0					7	5	2	0	0	0	0.087582	1	15048	15048		82.305	30.006	1	77591			40051	1181	26962	27065	40552	40552					-0.006870746536719707
SVADLAFAH	9	Unmodified	_SVADLAFAH_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7375793457031	2	465.737617	929.460681	-0.49405	-0.0002301	1.0506	0.00048932	0.55658	0.00025922	465.73782091944315	38.326	0.20301	38.326	38.218	38.421	0					6	4	2	0	0	0	0.028654	1	15069	15069		110.34	51.555	1	135200			40052	1181	26962	27065	40553	40553					-0.006870746536719707
SVADPGQLK	9	Unmodified	_SVADPGQLK_					0	0	0		ENST00000483926.5_1_1:27668800-27676624:+|nuORF;nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1	ENST00000483926.5_1_1:27668800-27676624:+|nuORF	ENST00000483926.5_1_1:27668800-27676624:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7508850097656	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.276	1	23.276	22.776	23.776	0								0	0	0	0.30504	1	6972	6972		34.173	5.9183	1				40053	4510	26963	27066	40554	40554					0.02669194517818596
SVADPGQLK	9	Unmodified	_SVADPGQLK_					0	0	0		ENST00000483926.5_1_1:27668800-27676624:+|nuORF;nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1	ENST00000483926.5_1_1:27668800-27676624:+|nuORF	ENST00000483926.5_1_1:27668800-27676624:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7506103515625	2	457.750724	913.486896	-0.43776	-0.00020039	-0.33346	-0.00015264	-0.77122	-0.00035303	457.7507200432894	23.438	0.36755	23.438	23.235	23.602	0					19	7	4	0	0	0	0.40353	1	7940	7940		41.427	3.6151	1	621240			40054	4510	26963	27066	40555	40555					0.02669194517818596
SVADVSSSR	9	Unmodified	_SVADVSSSR_					0	0	0		ENST00000582590.1_1_17:26731487-26733159:-|nuORF;nc|ENSG00000076351|Q96NT5-2|SLC46A1;ENSG00000076351|ENST00000612814|SLC46A1	ENST00000582590.1_1_17:26731487-26733159:-|nuORF	ENST00000582590.1_1_17:26731487-26733159:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.22747802734375	2	454.227613	906.440674	0.71101	0.00032296	-0.74171	-0.0003369	-0.030694	-1.3942E-05	454.22715186614585	18.604	0.17918	18.604	18.516	18.695	0					9	4	3	0	0	0	0.15558	1	5487	5487		66.962	17.426	1	281500			40055	1560	26964	27067	40556	40556					-0.016288703842747054
SVAECQLMK	9	Unmodified	_SVAECQLMK_					0	0	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.24884033203125	2	504.74627	1007.47799	0.67566	0.00034104	1.2673	0.00063966	1.9429	0.00098069	504.74682950767135	30.248	0.19277	30.248	30.14	30.333	0					10	6	2	0	0	0	0.35021	1	9606	9606		45.972	1.8554	1	43720			40056	2337	26965	27068	40557	40557					-0.025452384345385326
SVAECQLMK	9	Unmodified	_SVAECQLMK_					0	0	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.74639892578125	2	504.74627	1007.47799	0.7844	0.00039592	1.1897	0.00060051	1.9741	0.00099643	504.7470257963866	30.528	0.56013	30.528	30.245	30.805	0					21	13	2	0	0	0	0.037924	1	11008	11008		101.25	29.375	1	602990			40057	2337	26965	27068	40558	40558					-0.025452384345385326
SVAECQLMK	9	Unmodified	_SVAECQLMK_					0	0	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.24749755859375	2	504.74627	1007.47799	0.034922	1.7627E-05	0.3693	0.0001864	0.40422	0.00020403	504.7468620432557	30.342	0.14018	30.342	30.229	30.369	0					5	3	2	0	0	0	0.46194	1	10320	10320		36.447	0.82846	1	42152			40058	2337	26965	27068	40559	40559					-0.025452384345385326
SVAECQLMK	9	Unmodified	_SVAECQLMK_					0	0	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.747314453125	2	504.74627	1007.47799	-0.36476	-0.00018411	3.246	0.0016384	2.8812	0.0014543	504.7476181044034	30.457	0.45495	30.457	30.342	30.797	0					10	9	2	0	0	0	0.1424	1	11287	11287		69.628	14.851	1	613830			40059	2337	26965	27068	40560	40560					-0.025452384345385326
SVAECQLMK	9	Unmodified	_SVAECQLMK_					0	0	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.74639892578125	2	504.74627	1007.47799	1.2135	0.00061253	-0.51886	-0.00026189	0.69467	0.00035063	504.7460569696047	30.45	0.45496	30.45	30.325	30.78	0					16	9	2	0	0	0	0.095583	1	11278	11278		80.455	8.5771	1	551130			40060	2337	26965	27068	40561	40561					-0.025452384345385326
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(100)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.759033203125	2	533.257002	1064.49945	0.44747	0.00023861	0.28437	0.00015164	0.73184	0.00039026	533.2574168897498	27.061	0.18489	27.061	26.969	27.154	0					12	6	3	0	0	0	0.037924	1	8285	8285		101.25	13.556	1	118610			40061	2337	26965	27069	40562	40562	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(140)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2572631835938	2	533.257002	1064.49945	0.13912	7.4189E-05	1.03	0.00054928	1.1692	0.00062346	533.2573356262822	27.291	0.46288	27.291	26.956	27.419	0					18	11	3	0	0	0	0.010494	1	9521	9521		139.97	14.156	1	1095300			40062	2337	26965	27069	40563	40563	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(77)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.2582397460938	2	533.257002	1064.49945	-0.40237	-0.00021457	2.1623	0.0011531	1.76	0.00093851	533.2579911161424	27.077	0.24235	27.077	26.963	27.205	0					14	8	2	0	0	0	0.10915	1	8568	8568		77.318	13.11	1	574060			40063	2337	26965	27069	40564	40564	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(150)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.2576293945312	2	533.257002	1064.49945	1.7391	0.0009274	-2.1244	-0.0011328	-0.38523	-0.00020543	533.2563793461305	27.313	0.21833	27.313	27.203	27.422	0					18	4	5	0	0	0	0.0067848	1	9871	9871		150.36	6.4748	1	4010000			40064	2337	26965	27069	40565	40565	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(140)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2579956054688	2	533.257002	1064.49945	1.1291	0.00060209	-0.21728	-0.00011587	0.91179	0.00048622	533.2572241824697	27.132	0.16641	27.132	27.052	27.219	0					13	4	4	0	0	0	0.012231	1	8828	8828		136.27	17.047	1	340090			40065	2337	26965	27069	40566	40566	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(110)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2572021484375	2	533.257002	1064.49945	-1.302	-0.00069432	2.1541	0.0011487	0.85201	0.00045434	533.2584864526426	27.129	0.25299	27.129	27.041	27.294	0					16	6	4	0	0	0	0.02953	1	8820	8820		109.48	13.663	1	380900			40066	2337	26965	27069	40567	40567	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(150)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2573852539062	2	533.257002	1064.49945	1.7871	0.000953	-1.7311	-0.00092312	0.056035	2.9881E-05	533.2566386565934	27.247	0.42276	27.247	26.985	27.407	0					21	8	5	0	0	0	0.0080613	1	9739	9739		145.16	14.124	1	2548200			40067	2337	26965	27069	40568	40568	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C)	_SVAEC(Carbamidomethyl (C))QLMK_	SVAEC(1)QLMK		SVAEC(180)QLMK		0	1	0		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2573852539062	2	533.257002	1064.49945	3.3951	0.0018105	-2.0751	-0.0011066	1.3199	0.00070387	533.2566675050792	27.229	0.47141	27.229	26.919	27.39	0					20	9	4	0	0	0	0.0017279	1	9731	9731		176.09	28.044	1	2419100			40068	2337	26965	27069	40569	40569	95				-0.030218534058349178
SVAECQLMK	9	Carbamidomethyl (C),Oxidation (M)	_SVAEC(Carbamidomethyl (C))QLM(Oxidation (M))K_	SVAEC(1)QLMK	SVAECQLM(1)K	SVAEC(60)QLMK	SVAECQLM(60)K	0	1	1		ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2546997070312	2	541.254459	1080.49437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.314	1	21.314	20.814	21.814	0								0	0	0	0.14881	1	6157	6157		60.118	20.865	1				40069	2337	26965	27070	40570	40570	95	102			-0.042661572684210114
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2679748535156	2	498.267073	994.519593	0.2269	0.00011306	0.37243	0.00018557	0.59934	0.00029863	498.2673189205061	18.505	0.082603	18.505	18.428	18.511	0					7	3	3	0	0	0	0.070005	1	4610	4610		88.177	45.313	1	143220			40070	4489	26966	27071	40571	40571					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2670593261719	2	498.267073	994.519593	0.69179	0.0003447	-0.82401	-0.00041058	-0.13222	-6.5878E-05	498.2666720242791	18.807	0.21564	18.807	18.6	18.816	0					10	5	4	0	0	0	0.020674	1	5560	5560		120.87	52.082	1	1649200			40071	4489	26966	27071	40572	40572					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.26654052734375	2	498.267073	994.519593	-1.1023	-0.00054923	0.77343	0.00038537	-0.32885	-0.00016386	498.2673999111757	18.497	0.062424	18.497	18.441	18.503	0					6	2	3	0	0	0	0.40353	1	4837	4837		41.427	11.109	1	137090			40072	4489	26966	27071	40573	40573					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2669677734375	2	498.267073	994.519593	0.8173	0.00040723	-0.30247	-0.00015071	0.51482	0.00025652	498.26693407281977	18.702	0.11753	18.702	18.644	18.761	0					4	2	2	0	0	0	0.04067	1	5798	5798		98.582	21.808	1	762010			40073	4489	26966	27071	40574	40574					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.26776123046875	2	498.267073	994.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.581	1	18.581	18.081	19.081	0								0	0	0	0.095784	1	4877	4877		72.879	21.544	1				40074	4489	26966	27071	40575	40575					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.26690673828125	2	498.267073	994.519593	0.1756	8.7496E-05	-0.17044	-8.4923E-05	0.0051635	2.5728E-06	498.26686999010474	18.582	0.11501	18.582	18.476	18.591	0					5	3	2	0	0	0	0.27123	1	4869	4869		53.089	21.559	1	150660			40075	4489	26966	27071	40576	40576					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2670593261719	2	498.267073	994.519593	-0.73016	-0.00036381	0.47944	0.00023889	-0.25072	-0.00012493	498.26724870391126	18.727	0.26209	18.727	18.522	18.784	0					9	5	3	0	0	0	0.078509	1	5672	5672		85.161	32.224	1	911300			40076	4489	26966	27071	40577	40577					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1;URB1|p.R2106W|1|0.08|ENSG00000142207|chr21:32316784-32316784|G/A|missense_variant	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.26690673828125	2	498.267073	994.519593	1.0252	0.00051082	-1.0474	-0.00052191	-0.022253	-1.1088E-05	498.266542239753	18.71	0.24159	18.71	18.605	18.846	0					7	5	2	0	0	0	0.013878	1	5662	5662		132.76	53.045	1	1577300			40077	4489	26966	27071	40578	40578					0.02211401640670374
SVAELRSQK	9	Unmodified	_SVAELRSQK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2887268066406	2	509.288005	1016.56146	-0.10721	-5.4601E-05	-0.011129	-5.668E-06	-0.11834	-6.0269E-05	509.28815220969216	17.521	0.096228	17.521	17.462	17.558	0					8	3	3	0	0	0	0.039418	1	4184	4184		83.647	42.869	1	211150			40078	3703	26967	27072	40579	40579					0.05383957329195255
SVAELRSQK	9	Unmodified	_SVAELRSQK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28826904296875	2	509.288005	1016.56146	-0.017694	-9.0115E-06	0.15131	7.706E-05	0.13361	6.8048E-05	509.2881156435242	17.852	0.2291	17.852	17.762	17.992	0					14	5	5	0	0	0	0.001287	1	5104	5104		152.06	66.199	1	1709100			40079	3703	26967	27072	40580	40580					0.05383957329195255
SVAELRSQK	9	Unmodified	_SVAELRSQK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2879638671875	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.581	1	17.581	17.081	18.081	0								0	0	0	0.11253	1	4433	4433		61.691	6.915	1				40080	3703	26967	27072	40581	40581					0.05383957329195255
SVAELRSQK	9	Unmodified	_SVAELRSQK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.28814697265625	2	509.288005	1016.56146	-0.40519	-0.00020636	0.32249	0.00016424	-0.082701	-4.2119E-05	509.2880302739	17.828	0.22046	17.828	17.718	17.939	0					7	4	3	0	0	0	0.0046931	1	5355	5355		131.62	33.034	1	266680			40081	3703	26967	27072	40582	40582					0.05383957329195255
SVAELRSQK	9	Unmodified	_SVAELRSQK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2867431640625	2	509.288005	1016.56146	-1.8579	-0.00094622	0.86651	0.0004413	-0.99141	-0.00050491	509.28850190098166	17.594	0.081202	17.594	17.558	17.64	0					4	2	2	0	0	0	0.032181	1	4424	4424		101.25	18.948	1	95676			40082	3703	26967	27072	40583	40583					0.05383957329195255
SVAGDFVKK	9	Unmodified	_SVAGDFVKK_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.76837158203125	2	475.768917	949.523281	-0.18326	-8.719E-05	-0.40139	-0.00019097	-0.58465	-0.00027816	475.76869274915737	22.691	0.29647	22.691	22.583	22.879	0					19	9	3	0	0	0	0.10915	1	6429	6429		77.318	10.888	1	1728900			40083	5777	26968	27073	40584	40584					0.04650071414528156
SVAGDFVKK	9	Unmodified	_SVAGDFVKK_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7687072753906	2	475.768917	949.523281	-0.40653	-0.00019341	0.063921	3.0412E-05	-0.34261	-0.000163	475.7689917248536	23.004	0.34779	23.004	22.874	23.222	0					28	8	5	0	0	0	0.0049871	1	7540	7540		158.07	44.663	1	15258000			40084	5777	26968	27073	40585	40585					0.04650071414528156
SVAGDFVKK	9	Unmodified	_SVAGDFVKK_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7692565917969	2	475.768917	949.523281	-0.4776	-0.00022723	0.0035612	1.6943E-06	-0.47404	-0.00022553	475.7689243120089	22.718	0.25981	22.718	22.618	22.878	0					25	9	4	0	0	0	0.063823	1	6709	6709		90.37	19.074	1	1859500			40085	5777	26968	27073	40586	40586					0.04650071414528156
SVAGDFVKK	9	Unmodified	_SVAGDFVKK_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.76873779296875	2	475.768917	949.523281	-0.44433	-0.0002114	-0.032269	-1.5353E-05	-0.4766	-0.00022675	475.7689024994008	22.916	0.51856	22.916	22.777	23.295	0					26	10	5	0	0	0	0.0016668	1	7819	7819		176.44	55.824	1	6638200			40086	5777	26968	27073	40587	40587					0.04650071414528156
SVAGIRTGE	9	Unmodified	_SVAGIRTGE_					0	0	0		ENST00000554997.1_1_14:64676435-64676651:+|nuORF	ENST00000554997.1_1_14:64676435-64676651:+|nuORF	ENST00000554997.1_1_14:64676435-64676651:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.24066162109375	2	445.240524	888.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.079	1	23.079	22.579	23.579	0								0	0	0	0.13425	1	6625	6625		63.534	0	1				40087	10651	26969	27074	40588	40588					0.017800238579980032
SVAGLCAIGPS	11	Unmodified	_SVAGLCAIGPS_					0	0	0		ENSG00000015532|ENST00000017003|XYLT2;ENST00000571021.1_1_17:48437265-48437649:+|nuORF	ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7522277832031	2	487.75241	973.490267	-0.081292	-3.965E-05	-0.49766	-0.00024274	-0.57896	-0.00028239	487.7523680534971	26.95	0.26095	26.95	26.828	27.089	0					12	5	3	0	0	0	0.17474	1	9710	9710		77.318	13.784	1	325310			40088	1082	26970	27075	40589	40589					0.0024612130015384537
SVAGLCAIGPS	11	Unmodified	_SVAGLCAIGPS_					0	0	0		ENSG00000015532|ENST00000017003|XYLT2;ENST00000571021.1_1_17:48437265-48437649:+|nuORF	ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7528076171875	2	487.75241	973.490267	-0.52858	-0.00025782	-1.233	-0.00060139	-1.7616	-0.00085921	487.75270058021914	26.911	0.3655	26.911	26.805	27.17	0					19	7	4	0	0	0	0.40479	1	9558	9558		51.193	10.415	1	691590			40089	1082	26970	27075	40590	40590					0.0024612130015384537
SVAGLLPRR	9	Unmodified	_SVAGLLPRR_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B;TMEM87B|p.K111Nfs*14|1|0.26|ENSG00000153214|chr2:112066946-112066946|A/-|frameshift_variant;TMEM87B|p.N134Mfs*4|1|0.16|ENSG00000153214|chr2:112067013-112067013|A/-|frameshift_variant	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.8027648925781	2	484.803626	967.592698	-0.63773	-0.00030917	-0.1087	-5.2697E-05	-0.74642	-0.00036187	484.80366507035313	28.155	0.5894	28.155	27.73	28.319	0					15	12	2	0	0	0	0.16002	1	10304	10304		66.429	16.988	1	48445			40090	5046	26971	27076	40591	40591					0.10760575153938134
SVAGLSAER	9	Unmodified	_SVAGLSAER_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.24053955078125	2	445.240524	888.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.192	1	23.192	22.692	23.692	0								0	0	0	0.25587	1	7037	7037		42.864	2.8061	1				40091	6139	26972	27077	40592	40592					0.017800238579980032
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.2550964355469	2	431.255643	860.496732	0.16351	7.0516E-05	0.30102	0.00012981	0.46453	0.00020033	431.2557669064716	26.257	0.20873	26.257	26.162	26.371	0					12	6	3	0	0	0	0.30841	1	7950	7950		49.536	8.7579	1	189460			40092	7499	26973	27078	40593	40593					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2553405761719	2	431.255643	860.496732	0.76737	0.00033093	-0.81227	-0.0003503	-0.044907	-1.9366E-05	431.25523730028596	26.539	0.23143	26.539	26.409	26.641	0					14	5	4	0	0	0	0.035062	1	9163	9163		104.06	29.013	1	1597700			40093	7499	26973	27078	40594	40594					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.2554626464844	2	431.255643	860.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.278	1	26.278	25.778	26.778	0								0	0	0	0.27939	1	8243	8243		39.253	1.4413	1				40094	7499	26973	27078	40595	40595					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.2553405761719	2	431.255643	860.496732	-0.49027	-0.00021143	0.43753	0.00018869	-0.052735	-2.2742E-05	431.25580773844007	26.535	0.26801	26.535	26.326	26.594	0					10	5	3	0	0	0	0.19952	1	9500	9500		61.691	12.155	1	425230			40095	7499	26973	27078	40596	40596					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.256103515625	2	431.255643	860.496732	0.19694	8.4931E-05	0.91322	0.00039383	1.1102	0.00047876	431.2561168990763	26.311	0.1107	26.311	26.259	26.37	0					4	2	2	0	0	0	0.44593	1	8467	8467		37.812	0.65241	1	60981			40096	7499	26973	27078	40597	40597					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.25616455078125	2	431.255643	860.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.386	1	26.386	25.886	26.886	0								0	0	0	0.13137	1	8488	8488		64.207	9.431	1				40097	7499	26973	27078	40598	40598					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.2554931640625	2	431.255643	860.496732	-0.37607	-0.00016218	0.5533	0.00023861	0.17723	7.6432E-05	431.25590593386187	26.344	0.14991	26.344	26.246	26.396	0					6	3	2	0	0	0	0.40353	1	8457	8457		41.427	5.8083	1	170030			40098	7499	26973	27078	40599	40599					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2554626464844	2	431.255643	860.496732	-0.46657	-0.00020121	0.63953	0.0002758	0.17296	7.459E-05	431.2559247440901	26.46	0.27069	26.46	26.349	26.62	0					12	5	4	0	0	0	0.18416	1	9364	9364		63.534	14.092	1	890930			40099	7499	26973	27078	40600	40600					0.06090382523188964
SVAGLSVTK	9	Unmodified	_SVAGLSVTK_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.Y52H|1|0.07|ENSG00000197841|chr19:34739546-34739546|T/C|missense_variant;ZNF181|p.V107Lfs*2|1|0.15|ENSG00000197841|chr19:34740695-34740695|A/-|frameshift_variant;ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2556457519531	2	431.255643	860.496732	0.94828	0.00040895	-0.8789	-0.00037903	0.069381	2.9921E-05	431.2551952546379	26.493	0.16982	26.493	26.383	26.553	0					11	3	4	0	0	0	0.085655	1	9380	9380		82.75	21.779	1	1170800			40100	7499	26973	27078	40601	40601					0.06090382523188964
SVAHLYSNLTK	11	Unmodified	_SVAHLYSNLTK_					0	0	0		ENSG00000173208|ENST00000308666|ABCD2;ENSG00000101986|ENST00000218104|ABCD1	ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	616.8353881835938	2	616.83532	1231.65609	-0.65922	-0.00040663	0.679	0.00041883	0.019776	1.2199E-05	616.8357056219502	29.487	0.33432	29.487	29.377	29.711	0					35	12	4	0	0	0	0.3224	1	9574	9574		60.118	0.18749	1	1367200			40101	2148	26974	27079	40602	40602					0.04952471080491705
SVAHSPPEK	9	Unmodified	_SVAHSPPEK_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2488098144531	2	476.248349	950.482145	0.00020774	9.8936E-08	0.014804	7.0504E-06	0.015012	7.1494E-06	476.24836245755495	14.431	0.11644	14.431	14.352	14.468	0					10	6	2	0	0	0	0.10915	1	2962	2962		77.318	25.982	1	67985			40102	5975	26975	27080	40603	40603					0.004923103750456903
SVAHSPPEK	9	Unmodified	_SVAHSPPEK_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2484436035156	2	476.248349	950.482145	0.35411	0.00016865	-0.90098	-0.00042909	-0.54687	-0.00026044	476.2478802012169	14.738	0.53433	14.738	14.3	14.834	0					26	13	3	0	0	0	0.00324	1	3646	3646		167.23	79.474	1	758580			40103	5975	26975	27080	40604	40604					0.004923103750456903
SVAHSPPEK	9	Unmodified	_SVAHSPPEK_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2481994628906	2	476.248349	950.482145	-0.62528	-0.00029779	0.13419	6.3907E-05	-0.49109	-0.00023388	476.2483042568675	14.641	0.32147	14.641	14.407	14.728	0					15	6	4	0	0	0	0.02429	1	3688	3688		114.89	38.12	1	232800			40104	5975	26975	27080	40605	40605					0.004923103750456903
SVAHSPPEK	9	Unmodified	_SVAHSPPEK_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2481994628906	2	476.248349	950.482145	0.77832	0.00037067	-0.97029	-0.0004621	-0.19197	-9.1425E-05	476.2477338894557	14.651	0.52276	14.651	14.188	14.711	0					19	10	3	0	0	0	0.032383	1	3702	3702		106.68	37.896	1	753340			40105	5975	26975	27080	40606	40606					0.004923103750456903
SVAIKIEGK	9	Unmodified	_SVAIKIEGK_					0	0	0			REV__nc|ENSG00000048828|Q9NZB2-5|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-5|FAM120A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7969665527344	2	472.792392	943.570232	-0.69033	-0.00032638	1.5547	0.00073507	0.86441	0.00040868	472.79347501806694	24.532	0.66604	24.532	23.979	24.645	0					23	13	3	0	0	0	0.16806	1	8397	8397		65.465	3.358	1	223080	+		40106	13023	26976	27081	40607	40607					0.09618930965655181
SVAITNKNI	9	Unmodified	_SVAITNKNI_					0	0	0		tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.27911376953125	2	480.279649	958.544745	0.032518	1.5618E-05	-0.81724	-0.0003925	-0.78472	-0.00037689	480.2794262347274	35.083	0.19743	35.083	34.99	35.188	0					13	8	3	0	0	0	0.12239	1	11498	11498		74.255	2.9593	1	70606			40107	23057	26977	27082	40608	40608					0.06381456443239131
SVAKETARR	9	Unmodified	_SVAKETARR_					0	0	0		ENST00000478558.1_1_1:153631742-153633774:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000478558.1_1_1:153631742-153633774:+|nuORF	ENST00000478558.1_1_1:153631742-153633774:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.29339599609375	2	509.293622	1016.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.038	1	13.038	12.538	13.538	0								0	0	0	0.034344	1	3080	3080		93.598	14.147	1				40108	4565	26978	27083	40609	40609					0.06506779423330045
SVAKETARR	9	Unmodified	_SVAKETARR_					0	0	0		ENST00000478558.1_1_1:153631742-153633774:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000478558.1_1_1:153631742-153633774:+|nuORF	ENST00000478558.1_1_1:153631742-153633774:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2937316894531	2	509.293622	1016.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.017	1	13.017	12.517	13.517	0								0	0	0	0.13137	1	2917	2917		64.207	0.901	1				40109	4565	26978	27083	40610	40610					0.06506779423330045
SVAKIAQYK	9	Unmodified	_SVAKIAQYK_					0	0	0		nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000504173.1_1_4:77045750-77069514:-|nuORF;ENST00000508465.5_1_4:77038865-77051838:-|nuORF;ENST00000508604.5_1_4:77039101-77051958:-|nuORF	nc|ENSG00000138750|Q7Z3B4-3|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2969055175781	2	504.297842	1006.58113	-0.062448	-3.1492E-05	-1.2689	-0.00063991	-1.3314	-0.0006714	504.2971845453508	21.096	0.081255	21.096	21.017	21.098	0					4	2	2	0	0	0	0.21263	1	5747	5747		60.118	14.146	1	93882			40110	4283	26979	27084	40611	40611					0.07810333339944009
SVAKIAQYK	9	Unmodified	_SVAKIAQYK_					0	0	0		nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000504173.1_1_4:77045750-77069514:-|nuORF;ENST00000508465.5_1_4:77038865-77051838:-|nuORF;ENST00000508604.5_1_4:77039101-77051958:-|nuORF	nc|ENSG00000138750|Q7Z3B4-3|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2976379394531	2	504.297842	1006.58113	-0.056577	-2.8532E-05	-0.75248	-0.00037948	-0.80906	-0.00040801	504.29739298723285	21.429	0.13477	21.429	21.34	21.474	0					7	3	3	0	0	0	0.04067	1	6817	6817		98.582	28.954	1	680740			40111	4283	26979	27084	40612	40612					0.07810333339944009
SVAKIAQYK	9	Unmodified	_SVAKIAQYK_					0	0	0		nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000504173.1_1_4:77045750-77069514:-|nuORF;ENST00000508465.5_1_4:77038865-77051838:-|nuORF;ENST00000508604.5_1_4:77039101-77051958:-|nuORF	nc|ENSG00000138750|Q7Z3B4-3|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.298095703125	2	504.297842	1006.58113	-0.45313	-0.00022851	0.71832	0.00036225	0.26518	0.00013373	504.2981473192207	21.299	0.1665	21.299	21.24	21.407	0					7	3	3	0	0	0	0.032383	1	7052	7052		106.68	32.428	1	356800			40112	4283	26979	27084	40613	40613					0.07810333339944009
SVAKNFFTK	9	Unmodified	_SVAKNFFTK_					0	0	0		nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.291748046875	2	521.290017	1040.56548	5.0661	0.0026409	-3.3157	-0.0017285	1.7504	0.00091245	521.2882102833926	26.847	0.11187	26.847	26.743	26.855	0					7	4	2	0	0	0	0.44949	1	8477	8477		37.508	8.3586	1	102800			40113	6192	26980	27085	40614	40614					0.0468204682290434
SVAKNFFTK	9	Unmodified	_SVAKNFFTK_					0	0	0		nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2902221679688	2	521.290017	1040.56548	1.0822	0.00056417	-0.1818	-9.4772E-05	0.90045	0.00046939	521.289845910393	27.08	0.15769	27.08	26.978	27.135	0					8	3	3	0	0	0	0.017421	1	9756	9756		126.24	65.271	1	587300			40114	6192	26980	27085	40615	40615					0.0468204682290434
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.2255859375	3	339.225598	1014.65496	0.22715	7.7056E-05	-0.32653	-0.00011077	-0.099373	-3.371E-05	339.22548463993866	19.561	0.18666	19.561	19.486	19.673	0					10	5	3	0	0	0	0.12278	1	5068	5068		74.165	36.657	1	487070			40115	2874	26981	27086	40616	40616					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.33502197265625	2	508.334759	1014.65496	-0.097893	-4.9762E-05	-0.20538	-0.0001044	-0.30327	-0.00015416	508.33475114887756	19.561	0.18666	19.561	19.486	19.673	0					10	5	3	0	0	0	0.0073977	1	5073	5073		143.37	85.144	1	450880			40116	2874	26981	27086	40617	40617					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.33447265625	2	508.334759	1014.65496	-0.024906	-1.2661E-05	-0.081481	-4.1419E-05	-0.10639	-5.408E-05	508.33469484203016	19.911	0.29934	19.911	19.811	20.11	0					14	6	4	0	0	0	2.6499E-05	1	6081	6081		186.41	82.354	1	2467900			40117	2874	26981	27086	40618	40618					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.2255554199219	3	339.225598	1014.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.885	1	19.885	19.385	20.385	0								0	0	0	0.043554	1	6078	6078		89.029	42.572	1				40118	2874	26981	27086	40619	40619					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.33453369140625	2	508.334759	1014.65496	-0.57612	-0.00029286	0.84969	0.00043193	0.27357	0.00013907	508.33510498074276	19.623	0.070953	19.623	19.555	19.626	0					4	2	2	0	0	0	0.21419	1	5342	5342		44.377	7.2181	1	75281			40119	2874	26981	27086	40620	40620					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3350830078125	2	508.334759	1014.65496	-0.46754	-0.00023767	0.06172	3.1374E-05	-0.40582	-0.00020629	508.3350885269491	19.618	0.10654	19.618	19.544	19.65	0					6	3	2	0	0	0	0.043448	1	5335	5335		91.265	41.729	1	171520			40120	2874	26981	27086	40621	40621					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3348388671875	2	508.334759	1014.65496	-0.39097	-0.00019874	0.48595	0.00024702	0.094978	4.828E-05	508.3349767105938	19.765	0.16687	19.765	19.693	19.859	0					7	3	3	0	0	0	0.0046931	1	6308	6308		155.58	82.705	1	533440			40121	2874	26981	27086	40622	40622					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.2256164550781	3	339.225598	1014.65496	0.53028	0.00017988	-0.46523	-0.00015782	0.065052	2.2067E-05	339.2254119696728	19.784	0.11597	19.784	19.693	19.809	0					6	2	3	0	0	0	0.15558	1	6310	6310		66.962	33.04	1	402030			40122	2874	26981	27086	40623	40623					0.14822301502283608
SVAKTSVDILK	11	Unmodified	_SVAKTSVDILK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.8482666015625	2	580.847896	1159.68124	1.3806	0.0008019	-0.99304	-0.00057681	0.38752	0.00022509	580.847458476029	27.836	0.18721	27.836	27.749	27.936	0					7	4	2	0	0	0	0.61747	1	9785	9785		35.496	6.3461	1	130730			40123	7017	26982	27087	40624	40624					0.10778525883074508
SVAKVKET	8	Unmodified	_SVAKVKET_					0	0	0			REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.2552490234375	2	431.255643	860.496732	-0.83315	-0.0003593	0.90692	0.00039112	0.073769	3.1813E-05	431.25591807191984	26.281	0.14678	26.281	26.177	26.323	0					7	4	2	0	0	0	0.74405	1	8232	8232		27.882	5.9224	1	158410	+		40124	22020	26983	27088	40625	40625					0.06090382523200333
SVALGLAG	8	Unmodified	_SVALGLAG_					0	0	0			REV__ENST00000366756.3_1_6:170597857-170599216:-|nuORF	REV__ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.19781494140625	2	344.205421	686.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.069	1	19.069	18.569	19.569	0								0	0	0	1.7419	1	5964	5964		29.842	0	1		+		40125	18587	26984	27089	40626	40626					0.04054770260177065
SVALLTFGGI	10	Unmodified	_SVALLTFGGI_					0	0	0		SLC7A10|p.S325L|1|0.3|ENSG00000130876|chr19:33211267-33211267|G/A|missense_variant	SLC7A10|p.S325L|1|0.3|ENSG00000130876|chr19:33211267-33211267|G/A|missense_variant	SLC7A10|p.S325L|1|0.3|ENSG00000130876|chr19:33211267-33211267|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2870178222656	2	489.286943	976.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.19	1	39.19	38.69	39.69	0								0	0	0	0.41253	1	13184	13184		26.693	2.1737	1				40126	22419	26985	27090	40627	40627					0.07011528591374372
SVALSALPSS	10	Unmodified	_SVALSALPSS_					0	0	0			REV__ENST00000457356.8_1_8:72756359-72756527:+|nuORF	REV__ENST00000457356.8_1_8:72756359-72756527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.258056640625	2	466.258382	930.502212	-0.49895	-0.00023264	-0.4089	-0.00019065	-0.90785	-0.00042329	466.2583030786153	22.555	0.56602	22.555	22.138	22.705	0					34	11	4	0	0	0	0.22198	1	7479	7479		76.774	0	1	911290	+		40127	19353	26986	27091	40628	40628					0.034180613149942474
SVAMLGAGAGV	11	Unmodified	_SVAMLGAGAGV_					0	0	0		ENSG00000204922|ENST00000377953|UQCC3	ENSG00000204922|ENST00000377953|UQCC3	ENSG00000204922|ENST00000377953|UQCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7468566894531	2	466.747127	931.479702	0.41285	0.00019269	-1.6101	-0.00075152	-1.1973	-0.00055883	466.7466083179366	36.639	0.090057	36.639	36.595	36.685	0					4	2	2	0	0	0	0.35272	1	13848	13848		56.721	4.4219	1	63438			40128	7730	26987	27092	40629	40629					0.011221386457464178
SVANPAFLK	9	Unmodified	_SVANPAFLK_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENST00000576862.5_1_17:5290923-5298221:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7711486816406	2	473.77146	945.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.026	1	32.026	31.526	32.526	0								0	0	0	0.10826	1	12134	12134		69.628	16.691	1				40129	2536	26988	27093	40630	40630					0.05342375277143674
SVAPATGSK	9	Unmodified	_SVAPATGSK_					0	0	0		nc|ENSG00000188549|Q6ZUT6|CCDC9B;ENST00000558912.1_1_15:40628773-40628908:-|nuORF;nc|ENSG00000188549|Q6ZUT6-2|CCDC9B;ENST00000382688.8_1_15:40627361-40631125:-|nuORF;nc|ENSG00000188549|Q6ZUT6-4|CCDC9B;ENSG00000188549|ENST00000397536|CCDC9B	nc|ENSG00000188549|Q6ZUT6|CCDC9B	nc|ENSG00000188549|Q6ZUT6|CCDC9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.2244873046875	2	409.224342	816.434132	0.99463	0.00040703	-0.51328	-0.00021005	0.48135	0.00019698	409.2241602271736	16.325	0.22661	16.325	16.149	16.375	0					8	5	2	0	0	0	0.50858	1	4412	4412		31.53	4.8369	1	708770			40130	11698	26989	27094	40631	40631					0.018572364549982012
SVAPSPAVDK	10	Unmodified	_SVAPSPAVDK_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.76373291015625	2	485.763832	969.513111	0.35907	0.00017442	0.11666	5.6667E-05	0.47573	0.00023109	485.7638426622996	21.114	0.26181	21.114	20.942	21.204	0					13	6	3	0	0	0	0.60281	1	6632	6632		33.922	2.3918	1	240930			40131	3458	26990	27095	40632	40632					0.027134636892810704
SVAQCQLMK	9	Carbamidomethyl (C)	_SVAQC(Carbamidomethyl (C))QLMK_	SVAQC(1)QLMK		SVAQC(96)QLMK		0	1	0		ENSG00000142208|ENST00000649815|AKT1	ENSG00000142208|ENST00000649815|AKT1	ENSG00000142208|ENST00000649815|AKT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.7655029296875	2	532.764994	1063.51544	0.40762	0.00021717	-0.092355	-4.9203E-05	0.31527	0.00016796	532.7652916160407	25.232	0.21933	25.232	25.143	25.362	0					14	6	4	0	0	0	0.048471	1	7568	7568		95.815	39.094	1	398630			40132	4490	26991	27096	40633	40633	190				-0.013781471689071623
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.800537109375	2	479.800217	957.585882	0.028422	1.3637E-05	0.82144	0.00039413	0.84986	0.00040776	479.80056863137366	40.525	0.22309	40.525	40.453	40.676	0					21	13	2	0	0	0	0.16962	1	13086	13086		65.278	0	1	109190			40133	1514	26992	27097	40634	40634					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.79974365234375	2	479.800217	957.585882	0.4832	0.00023184	-1.2276	-0.000589	-0.7444	-0.00035716	479.7994224113257	40.803	0.3233	40.803	40.759	41.082	0					21	10	3	0	0	0	0.12418	1	15569	15569		73.841	0	1	312080			40134	1514	26992	27097	40635	40635					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.8003234863281	2	479.800217	957.585882	-1.4046	-0.00067394	1.3346	0.00064035	-0.070007	-3.3589E-05	479.8008299849054	40.649	0.26328	40.649	40.519	40.782	0					24	15	2	0	0	0	0.067603	1	13587	13587		89.029	0	1	230610			40135	1514	26992	27097	40636	40636					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7998352050781	2	479.800217	957.585882	0.66919	0.00032108	-1.3055	-0.00062638	-0.63631	-0.0003053	479.79950733867173	40.806	0.37403	40.806	40.711	41.085	0					18	11	3	0	0	0	0.037098	1	16083	16083		102.06	0	1	838180			40136	1514	26992	27097	40637	40637					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.79962158203125	2	479.800217	957.585882	0.0348	1.6697E-05	-0.10546	-5.0601E-05	-0.070662	-3.3904E-05	479.8001274537158	40.635	0.1685	40.635	40.529	40.697	0					16	9	2	0	0	0	0.17062	1	14405	14405		65.157	0	1	150920			40137	1514	26992	27097	40638	40638					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.8002014160156	2	479.800217	957.585882	-0.30826	-0.0001479	0.96486	0.00046294	0.6566	0.00031504	479.8006263015237	40.621	0.2217	40.621	40.506	40.727	0					25	12	3	0	0	0	0.12418	1	14402	14402		73.841	0	1	140300			40138	1514	26992	27097	40639	40639					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.8001708984375	2	479.800217	957.585882	-0.65224	-0.00031295	0.78446	0.00037639	0.13222	6.3441E-05	479.8005633399679	40.771	0.37342	40.771	40.629	41.002	0					12	6	3	0	0	0	0.031595	1	16202	16202		107.45	5.3934	1	859010			40139	1514	26992	27097	40640	40640					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.G1200Dfs*9|1|0.28|ENSG00000073614|chr12:307787-307787|T/-|frameshift_variant;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant;KDM5A|p.V1093Sfs*20|1|0.21|ENSG00000073614|chr12:309904-309905|-/T|frameshift_variant	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.800048828125	2	479.800217	957.585882	0.92268	0.0004427	-1.3726	-0.00065859	-0.44996	-0.00021589	479.7995038049701	40.754	0.45841	40.754	40.656	41.115	0					20	8	4	0	0	0	0.026656	1	16215	16215		112.3	0	1	1640100			40140	1514	26992	27097	40641	40641					0.10539217482710228
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.27972412109375	2	480.279649	958.544745	0.032212	1.5471E-05	-0.90688	-0.00043555	-0.87466	-0.00042008	480.2792544246251	20.882	0.1192	20.882	20.814	20.933	0					7	4	2	0	0	0	0.02429	1	5651	5651		114.89	18.861	1	357560			40141	1294	26993	27098	40642	40642					0.06381456443239131
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.279541015625	2	480.279649	958.544745	0.49959	0.00023994	-1.0767	-0.00051711	-0.57709	-0.00027717	480.27906994665375	21.221	0.18896	21.221	21.135	21.323	0					8	4	3	0	0	0	0.00065248	1	6700	6700		186.41	32.292	1	2508000			40142	1294	26993	27098	40643	40643					0.06381456443239131
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.27984619140625	2	480.279649	958.544745	-1.3857	-0.0006655	0.62907	0.00030213	-0.75659	-0.00036337	480.27994784950437	20.896	0.19858	20.896	20.841	21.04	0					13	6	3	0	0	0	0.035106	1	5907	5907		104.01	12.748	1	644010			40143	1294	26993	27098	40644	40644					0.06381456443239131
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2790222167969	2	480.279649	958.544745	0.67412	0.00032377	-1.6392	-0.00078729	-0.96511	-0.00046352	480.2788727421548	21.121	0.31337	21.121	21.011	21.324	0					14	6	3	0	0	0	0.0011548	1	6963	6963		181.41	27.289	1	1919100			40144	1294	26993	27098	40645	40645					0.06381456443239131
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2792053222656	2	480.279649	958.544745	-0.30354	-0.00014579	-0.30313	-0.00014559	-0.60667	-0.00029137	480.2794463202678	20.984	0.1591	20.984	20.919	21.078	0					9	4	3	0	0	0	0.0055674	1	5993	5993		155.58	37.774	1	722530			40145	1294	26993	27098	40646	40646					0.06381456443239131
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.279052734375	2	480.279649	958.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.954	1	20.954	20.454	21.454	0								0	0	0	0.010204	1	5988	5988		109.44	23.577	1				40146	1294	26993	27098	40647	40647					0.06381456443239131
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.27935791015625	2	480.279649	958.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.114	1	21.114	20.614	21.614	0								0	0	0	0.0082486	1	6820	6820		173.39	31.872	1				40147	1294	26993	27098	40648	40648					0.06381456443239131
SVAQTVVQK	9	Unmodified	_SVAQTVVQK_					0	0	0		nc|ENSG00000057294|Q99959|PKP2;ENSG00000057294|ENST00000340811|PKP2	nc|ENSG00000057294|Q99959|PKP2	nc|ENSG00000057294|Q99959|PKP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2793273925781	2	480.279649	958.544745	2.3172	0.0011129	-2.2425	-0.001077	0.074663	3.5859E-05	480.27833280298677	21.117	0.31294	21.117	21.008	21.321	0					13	6	3	0	0	0	0.0011548	1	6809	6809		181.41	22.131	1	2002200			40148	1294	26993	27098	40649	40649					0.06381456443239131
SVAQVGAKLK	10	Unmodified	_SVAQVGAKLK_					0	0	0			REV__ENST00000380995.5_1_22:47569631-47570030:+|nuORF	REV__ENST00000380995.5_1_22:47569631-47570030:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.8115539550781	2	500.811116	999.60768	0.39819	0.00019942	-0.91857	-0.00046003	-0.52038	-0.00026061	500.81085411370725	14.927	0.083611	14.927	14.88	14.964	0					5	3	2	0	0	0	0.16745	1	3150	3150		83.647	0.89654	1	132490	+		40149	18775	26994	27099	40650	40650					0.10786022231275183
SVAQVGAKLK	10	Unmodified	_SVAQVGAKLK_					0	0	0			REV__ENST00000380995.5_1_22:47569631-47570030:+|nuORF	REV__ENST00000380995.5_1_22:47569631-47570030:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.81048583984375	2	500.811116	999.60768	1.105	0.0005534	-1.9913	-0.00099728	-0.88632	-0.00044388	500.8100125142341	15.154	0.11621	15.154	15.096	15.212	0					4	2	2	0	0	0	0.09653	1	3944	3944		96.034	2.8904	1	783590	+		40150	18775	26994	27099	40651	40651					0.10786022231275183
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF;nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7872314453125	2	479.787641	957.56073	0.028764	1.38E-05	-0.40179	-0.00019278	-0.37303	-0.00017897	479.78736425358056	31.629	0.29524	31.629	31.558	31.853	0					29	13	3	0	0	0	0.026656	1	10171	10171		112.3	48.762	1	654410			40151	5779	26995	27100	40652	40652					0.08025162680144149
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF;nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7872619628906	2	479.787641	957.56073	-0.11268	-5.4061E-05	-0.41583	-0.00019951	-0.52851	-0.00025357	479.7874076504468	31.92	0.44384	31.92	31.764	32.208	0					22	9	4	0	0	0	0.0028263	1	12069	12069		169.65	64.906	1	3983600			40152	5779	26995	27100	40653	40653					0.08025162680144149
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF;nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.78704833984375	2	479.787641	957.56073	0.035804	1.7178E-05	-0.57033	-0.00027364	-0.53453	-0.00025646	479.78743659129145	31.685	0.28894	31.685	31.566	31.854	0					16	8	3	0	0	0	0.026656	1	10913	10913		112.3	30.055	1	694450			40153	5779	26995	27100	40654	40654					0.08025162680144149
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF;nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7873840332031	2	479.787641	957.56073	-0.30874	-0.00014813	0.017549	8.42E-06	-0.29119	-0.00013971	479.78756827568105	31.696	0.23004	31.696	31.593	31.823	0					13	6	3	0	0	0	0.058553	1	10940	10940		92.239	45.782	1	514240			40154	5779	26995	27100	40655	40655					0.08025162680144149
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF;nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7874450683594	2	479.787641	957.56073	-0.65224	-0.00031294	0.16471	7.9026E-05	-0.48753	-0.00023391	479.78771427226206	31.877	0.41801	31.877	31.768	32.186	0					23	8	4	0	0	0	0.0028263	1	11949	11949		169.65	70.277	1	5271800			40155	5779	26995	27100	40656	40656					0.08025162680144149
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF;nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7874755859375	2	479.787641	957.56073	0.9223	0.00044251	-1.0848	-0.00052049	-0.16254	-7.7982E-05	479.787013122652	31.861	0.36787	31.861	31.751	32.119	0					16	7	4	0	0	0	0.037098	1	11964	11964		102.06	47.339	1	4320700			40156	5779	26995	27100	40657	40657					0.08025162680144149
SVARGHEAGGL	11	Unmodified	_SVARGHEAGGL_					0	0	0			REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	352.18853759765625	3	351.852712	1052.53631	0.16087	5.6601E-05	-1.7039	-0.00059954	-1.5431	-0.00054294	352.1870400864618	24.286	0.24135	24.286	24.155	24.396	0					21	8	3	0	0	0	0.5473	1	7158	7158		35.178	2.4277	1	517780	+		40157	20622	26996	27101	40658	40658					0.012139025266151293
SVARIAKLEK	10	Unmodified	_SVARIAKLEK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.2363586425781	3	372.236274	1113.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.76	1	20.76	20.26	21.26	0								0	0	0	0.30898	1	6646	6646		49.466	1.8085	1				40158	4819;10084	26997	27102	40659	40659					0.13469669185428756
SVASAAAVLSH	11	Unmodified	_SVASAAAVLSH_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.77435302734375	2	506.774731	1011.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.155	1	32.155	31.655	32.655	0								0	0	0	0.39691	1	10714	10714		37.812	6.2817	1				40159	3083	26998	27103	40660	40660					0.029602684378460253
SVASASTTR	9	Unmodified	_SVASASTTR_					0	0	0		ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant;ELF4|p.A554Pfs*13|1|0.32|ENSG00000102034|chrX:130067053-130067053|C/-|frameshift_variant;ENSG00000102034|ENST00000308167|ELF4	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.23052978515625	2	440.230156	878.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.615	1	15.615	15.115	16.115	0								0	0	0	0.0537	1	4070	4070		85.161	24.189	1				40160	903	26999	27104	40661	40661					0.0016743347832743893
SVASAVKLNK	10	Unmodified	_SVASAVKLNK_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8081970214844	2	508.808574	1015.60259	-0.021549	-1.0964E-05	-0.48624	-0.0002474	-0.50779	-0.00025837	508.8083796154944	22.157	0.23318	22.157	22.061	22.295	0					11	5	3	0	0	0	0.20981	1	7169	7169		78.264	18.333	1	840460			40161	2984	27000	27105	40662	40662					0.09541718368666352
SVASGSGFIV	10	Unmodified	_SVASGSGFIV_					0	0	0		HTRA1|p.P200S|1|0.33|ENSG00000166033|chr10:122489447-122489447|C/T|missense_variant	HTRA1|p.P200S|1|0.33|ENSG00000166033|chr10:122489447-122489447|C/T|missense_variant	HTRA1|p.P200S|1|0.33|ENSG00000166033|chr10:122489447-122489447|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.24542236328125	2	462.245275	922.475997	-0.13278	-6.1377E-05	0.27059	0.00012508	0.13781	6.3703E-05	462.24539252455526	27.68	0.38625	27.68	27.505	27.892	0					19	9	3	0	0	0	0.52707	1	9076	9076		42.396	1.618	1	301140			40162	11215	27001	27106	40663	40663					0.011657921435244134
SVASHRSPHQI	11	Unmodified	_SVASHRSPHQI_					0	0	0			REV__ENST00000597705.5_1_19:51301978-51305485:-|nuORF	REV__ENST00000597705.5_1_19:51301978-51305485:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.8824157714844	3	406.882782	1217.62652	-1.3892	-0.00056523	0.47599	0.00019367	-0.91319	-0.00037156	406.8830924817637	27.415	0.39631	27.415	27.165	27.561	0					36	14	3	0	0	0	0.65797	1	8667	8667		31.634	1.0654	1	497370	+		40163	20577	27002	27107	40664	40664					0.026409518550508437
SVASIEEY	8	Unmodified	_SVASIEEY_					0	0	0		ENSG00000169047|ENST00000305123|IRS1;IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2119140625	2	449.21364	896.412728	-1.1812	-0.00053063	-3.0946	-0.0013901	-4.2759	-0.0019208	449.212603811518	20.695	0.42369	20.695	20.586	21.01	0					21	13	3	0	0	0	0.57802	1	5814	5814		52.299	0	1	703560			40164	6143	27003	27108	40665	40665					-0.03962193364372979
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.26849365234375	2	453.26875	904.522947	-0.0074407	-3.3727E-06	-0.41306	-0.00018723	-0.4205	-0.0001906	453.2685074575471	29.239	0.65972	29.239	29.125	29.785	0					57	24	5	0	0	0	0.019258	2	9197	9197;9351		123.21	40.968	1	7782900			40165	8472	27004	27109	40666;40667	40666					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2682800292969	2	453.26875	904.522947	-0.12195	-5.5275E-05	-0.51144	-0.00023182	-0.63338	-0.00028709	453.26849544269703	29.531	0.78126	29.531	29.381	30.163	0					48	16	5	0	0	0	0.00324	2	10909	10909;11097		167.23	54.818	1	52623000			40166	8472	27004	27109	40668;40669	40668					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2691345214844	2	453.26875	904.522947	0.30562	0.00013853	-1.0887	-0.00049348	-0.7831	-0.00035495	453.26816777098173	29.318	0.61248	29.318	29.181	29.794	0					35	15	5	0	0	0	1.3754E-05	2	9815	9815;9986		204.62	68.357	1	10581000			40167	8472	27004	27109	40670;40671	40670					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2684020996094	2	453.26875	904.522947	0.0023159	1.0497E-06	-0.69289	-0.00031406	-0.69057	-0.00031301	453.26839275818475	29.301	0.30424	29.301	29.209	29.513	0					21	7	4	0	0	0	0.012936	2	9829	9829;9904		134.77	52.015	1	1515800			40168	8472	27004	27109	40672;40673	40672					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.26849365234375	2	453.26875	904.522947	-0.41606	-0.00018859	-0.099667	-4.5176E-05	-0.51572	-0.00023376	453.2687275545499	29.464	0.9056	29.464	29.258	30.163	0					54	18	5	0	0	0	0.0023831	3	10782	10762;10782;10975		172.25	59.838	1	41381000			40169	8472	27004	27109	40674;40675;40676	40675					0.06686651694667489
SVASKEAPK	9	Unmodified	_SVASKEAPK_					0	0	0			REV__RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant	REV__RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7581481933594	2	458.758549	915.502546	-0.44185	-0.0002027	-0.38958	-0.00017872	-0.83143	-0.00038143	458.758403978256	21.848	0.41422	21.848	21.539	21.953	0					13	8	2	0	0	0	0.28897	1	7166	7166		51.193	6.8155	1	402840	+		40170	15862	27005	27110	40677	40677					0.041414810348555875
SVASPFTSK	9	Unmodified	_SVASPFTSK_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ENSG00000127249|ENST00000342695|ATP13A4;ENSG00000187527|ENST00000342358|ATP13A5	nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2448425292969	2	462.245275	922.475997	0.081751	3.7789E-05	-0.40786	-0.00018853	-0.32611	-0.00015074	462.2450580844435	27.855	0.51923	27.855	27.676	28.195	0					35	12	4	0	0	0	0.22837	1	9730	9730		58.23	10.573	1	2480000			40171	254;7200	27006	27111	40678	40678					0.011657921435244134
SVASPFTSK	9	Unmodified	_SVASPFTSK_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ENSG00000127249|ENST00000342695|ATP13A4;ENSG00000187527|ENST00000342358|ATP13A5	nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.244873046875	2	462.245275	922.475997	-0.14706	-6.7979E-05	-0.41238	-0.00019062	-0.55944	-0.0002586	462.24504261473754	27.872	0.59301	27.872	27.665	28.258	0					35	12	4	0	0	0	0.04067	1	10132	10132		98.582	29.795	1	3623800			40172	254;7200	27006	27111	40679	40679					0.011657921435244134
SVASPFTSK	9	Unmodified	_SVASPFTSK_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ENSG00000127249|ENST00000342695|ATP13A4;ENSG00000187527|ENST00000342358|ATP13A5	nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2450256347656	2	462.245275	922.475997	-0.4683	-0.00021647	-0.0303	-1.4006E-05	-0.4986	-0.00023047	462.24520891539953	27.821	0.56626	27.821	27.611	28.177	0					29	11	4	0	0	0	0.10506	1	9987	9987		78.264	19.482	1	3133600			40173	254;7200	27006	27111	40680	40680					0.011657921435244134
SVASQSSMACR	11	Unmodified	_SVASQSSMACR_					0	0	0			REV__ENST00000590169.5_1_17:42275437-42275799:-|nuORF	REV__ENST00000590169.5_1_17:42275437-42275799:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7564086914062	2	563.752615	1125.49068	0.40849	0.00023029	4.4771	0.002524	4.8856	0.0027543	563.7561610639877	23.17	0.14211	23.17	23.08	23.222	0					8	3	3	0	0	0	0.44903	1	7647	7647		47.96	13.787	1	246100	+		40174	20513	27007	27112	40681	40681					-0.06704827042290162
SVASRRGTH	9	Unmodified	_SVASRRGTH_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL	ENSG00000119669|ENST00000238647|IRF2BPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7640380859375	2	485.762489	969.510425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.831	1	20.831	20.331	21.331	0								0	0	0	0.34101	1	5639	5639		19.997	2.6318	1				40175	3126	27008	27113	40682	40682					0.024450530749959398
SVASRRGTH	9	Unmodified	_SVASRRGTH_					0	0	0		ENSG00000119669|ENST00000238647|IRF2BPL;IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant;IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	ENSG00000119669|ENST00000238647|IRF2BPL	ENSG00000119669|ENST00000238647|IRF2BPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7643737792969	2	485.762489	969.510425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.784	1	20.784	20.284	21.284	0								0	0	0	0.22075	1	5864	5864		32.812	0	1				40176	3126	27008	27113	40683	40683					0.024450530749959398
SVASSRSSVLK	11	Unmodified	_SVASSRSSVLK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.8198852539062	2	560.81967	1119.62479	1.2789	0.00071723	-0.64011	-0.00035899	0.63878	0.00035824	560.8192990060461	19.254	0.083433	19.254	19.214	19.297	0					4	2	2	0	0	0	0.6208	1	4954	4954		35.178	35.178	1	100070			40177	2057	27009	27114	40684	40684					0.06975898046425755
SVASVASTAI	10	Unmodified	_SVASVASTAI_					0	0	0		RBM10|p.A399V|1|0.29|ENSG00000182872|chrX:47180454-47180454|C/T|missense_variant	RBM10|p.A399V|1|0.29|ENSG00000182872|chrX:47180454-47180454|C/T|missense_variant	RBM10|p.A399V|1|0.29|ENSG00000182872|chrX:47180454-47180454|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.2503356933594	2	453.250557	904.486562	-0.41595	-0.00018853	-0.19804	-8.9763E-05	-0.614	-0.00027829	453.2504187208374	15.505	0.19951	15.505	15.414	15.613	0					10	4	3	0	0	0	0.60076	1	4090	4090		34.173	2.2177	1	493280			40178	12006	27010	27115	40685	40685					0.030497747979552514
SVASYIAKLV	10	Unmodified	_SVASYIAKLV_					0	0	0		tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.8777160644531	3	350.877975	1049.6121	0.45709	0.00016038	-0.75221	-0.00026393	-0.29511	-0.00010355	350.8777180078542	34.251	0.17097	34.251	34.173	34.344	0					8	5	2	0	0	0	0.59277	1	12107	12107		35.152	0.97948	1	78731			40179	22769	27011	27116	40686	40686					0.08927486654192762
SVATGLNMMKK	11	Unmodified	_SVATGLNMMKK_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;LMTK2-BAIAP2L1|1|fusion;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.315185546875	2	590.314851	1178.61515	0.12311	7.2674E-05	-0.63029	-0.00037207	-0.50718	-0.0002994	590.3146210296086	27.177	0.093039	27.177	27.118	27.211	0					5	3	2	0	0	0	0.46959	1	8352	8352		46.457	13.644	1	47773			40180	978	27012	27117	40687	40687					0.03298670445042262
SVATGLNMMKK	11	Unmodified	_SVATGLNMMKK_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;LMTK2-BAIAP2L1|1|fusion;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.3155517578125	2	590.314851	1178.61515	0.21157	0.00012489	-0.16102	-9.5055E-05	0.050549	2.984E-05	590.3151831124225	27.456	0.13459	27.456	27.366	27.501	0					8	3	3	0	0	0	0.093595	1	9600	9600		91.265	24.836	1	319260			40181	978	27012	27117	40688	40688					0.03298670445042262
SVATGLNMMKK	11	Unmodified	_SVATGLNMMKK_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;LMTK2-BAIAP2L1|1|fusion;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.3158569335938	2	590.314851	1178.61515	-0.12	-7.0835E-05	1.0423	0.0006153	0.92232	0.00054446	590.3156719919074	27.447	0.21536	27.447	27.338	27.554	0					7	4	2	0	0	0	0.18431	1	9954	9954		76.17	24.977	1	249610			40182	978	27012	27117	40689	40689					0.03298670445042262
SVATSLKAPG	10	Unmodified	_SVATSLKAPG_					0	0	0		nc|nan|Q9NQ32-2|C11orf16;ENSG00000176029|ENST00000326053|C11orf16	nc|nan|Q9NQ32-2|C11orf16	nc|nan|Q9NQ32-2|C11orf16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7666015625	2	465.766374	929.518196	-0.43878	-0.00020437	-0.30117	-0.00014027	-0.73995	-0.00034464	465.76652045443865	23.592	0.13432	23.592	23.52	23.655	0					9	5	2	0	0	0	0.34667	1	6841	6841		62.107	10.915	1	178620			40183	6586	27013	27118	40690	40690					0.050617675518992655
SVATVVYLR	9	Unmodified	_SVATVVYLR_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.29779052734375	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.434	1	35.434	34.934	35.934	0								0	0	0	0.063706	1	11612	11612		82.241	32.799	1				40184	3782	27014	27119	40691	40691					0.07810333339944009
SVATVVYLR	9	Unmodified	_SVATVVYLR_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.298095703125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.701	1	35.701	35.201	36.201	0								0	0	0	0.0047356	1	13407	13407		115.49	46.707	1				40185	3782	27014	27119	40692	40692					0.07810333339944009
SVATWALL	8	Unmodified	_SVATWALL_					0	0	0		AP2A1|p.R538W|1|0.25|ENSG00000196961|chr19:49801448-49801448|C/T|missense_variant	AP2A1|p.R538W|1|0.25|ENSG00000196961|chr19:49801448-49801448|C/T|missense_variant	AP2A1|p.R538W|1|0.25|ENSG00000196961|chr19:49801448-49801448|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7452392578125	2	430.747453	859.480354	-0.49773	-0.00021439	-4.197	-0.0018078	-4.6947	-0.0020222	430.7457601909556	29.121	0.24399	29.121	29.022	29.266	0					10	5	3	0	0	0	0.6282	1	10762	10762		44.531	8.9128	1	153540			40186	175	27015	27120	40693	40693					0.04499301357088825
SVAVLRGIQK	10	Unmodified	_SVAVLRGIQK_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.P340Lfs*35|1|0.38|ENSG00000058600|chr16:22322880-22322880|C/-|frameshift_variant;ENST00000569787.1_1_16:22328322-22336592:+|nuORF	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.8385620117188	2	535.837665	1069.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.669	1	26.669	26.169	27.169	0								0	0	0	0.097225	1	8134	8134		80.455	34.503	1				40187	1304	27016	27121	40694	40694					0.12873400013927494
SVAVLRGIQK	10	Unmodified	_SVAVLRGIQK_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.P340Lfs*35|1|0.38|ENSG00000058600|chr16:22322880-22322880|C/-|frameshift_variant;ENST00000569787.1_1_16:22328322-22336592:+|nuORF	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.8380126953125	2	535.837665	1069.66078	0.1858	9.956E-05	1.5751	0.00084399	1.7609	0.00094355	535.8378708553184	26.922	0.17474	26.922	26.835	27.01	0					6	4	2	0	0	0	0.09653	1	9353	9353		96.034	13.793	1	643920			40188	1304	27016	27121	40695	40695					0.12873400013927494
SVAVLRGIQK	10	Unmodified	_SVAVLRGIQK_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.P340Lfs*35|1|0.38|ENSG00000058600|chr16:22322880-22322880|C/-|frameshift_variant;ENST00000569787.1_1_16:22328322-22336592:+|nuORF	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.8380737304688	2	535.837665	1069.66078	3.3596	0.0018002	-1.932	-0.0010352	1.4276	0.00076494	535.8360851037936	26.876	0.26381	26.876	26.772	27.036	0					7	5	2	0	0	0	0.09653	1	9564	9564		96.034	13.793	1	894650			40189	1304	27016	27121	40696	40696					0.12873400013927494
SVAVSEKGWR	10	Unmodified	_SVAVSEKGWR_					0	0	0		MTHFSD|p.P294Lfs*26|1|0.15|ENSG00000103248|chr16:86532282-86532282|G/-|frameshift_variant;nc|ENSG00000103248|Q2M296-4|MTHFSD;nc|ENSG00000103248|Q2M296-2|MTHFSD;nc|ENSG00000103248|Q2M296-3|MTHFSD;ENSG00000103248|ENST00000360900|MTHFSD	MTHFSD|p.P294Lfs*26|1|0.15|ENSG00000103248|chr16:86532282-86532282|G/-|frameshift_variant	MTHFSD|p.P294Lfs*26|1|0.15|ENSG00000103248|chr16:86532282-86532282|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.53515625	3	373.536612	1117.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.179	1	13.179	12.679	13.679	0								0	0	0	0.4201	1	2995	2995		15.333	0	1				40190	2226	27017	27122	40697	40697					0.03391646220529765
SVAVVNLQY	9	Unmodified	_SVAVVNLQY_					0	0	0		ENST00000495483.5_2_1:161137139-161146869:+|nuORF;ENSG00000143224|ENST00000367999|PPOX	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.77392578125	2	496.7742	991.533846	0.97652	0.00048511	-1.175	-0.0005837	-0.19845	-9.8585E-05	496.77352981509955	34.581	0.25925	34.581	34.474	34.734	0					9	5	2	0	0	0	0.034359	1	13305	13305		104.75	19.831	1	708140			40191	4534	27018	27123	40698	40698					0.03774054068958321
SVAVYCRE	8	Unmodified	_SVAVYCRE_					0	0	0		tr|U7SU83|U7SU83_FUSNUPhosphatidicacidphosphatasetype2/haloperoxidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01054PE=4SV=1	tr|U7SU83|U7SU83_FUSNUPhosphatidicacidphosphatasetype2/haloperoxidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01054PE=4SV=1	tr|U7SU83|U7SU83_FUSNUPhosphatidicacidphosphatasetype2/haloperoxidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01054PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7232971191406	2	463.723652	925.432752	-2.3882	-0.0011074	1.2354	0.0005729	-1.1527	-0.00053454	463.72431473021726	33.84	0.29438	33.84	33.733	34.027	0					17	8	3	0	0	0	0.63077	1	11908	11908		44.117	6.9577	1	390720			40192	22815	27019	27124	40699	40699					-0.03294720905410031
SVAWACKVR	9	Unmodified	_SVAWACKVR_					0	0	0		ENST00000483512.5_1_1:224622786-224703543:+|nuORF;ENST00000498126.5_1_1:224622786-224703543:+|nuORF	ENST00000483512.5_1_1:224622786-224703543:+|nuORF	ENST00000483512.5_1_1:224622786-224703543:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.27740478515625	2	510.276386	1018.53822	3.047	0.0015548	-0.76333	-0.00038951	2.2837	0.0011653	510.2758451523624	16.022	0.36983	16.022	15.964	16.333	0					16	7	3	0	0	0	0.13519	1	4361	4361		71.296	5.4925	1	13976000			40193	9981	27020	27125	40700	40700					0.029692400108615402
SVAWIRTLNST	11	Unmodified	_SVAWIRTLNST_					0	0	0			REV__ENST00000460853.1_1_22:51015219-51015891:-|nuORF	REV__ENST00000460853.1_1_22:51015219-51015891:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	624.3408203125	2	624.340769	1246.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.757	1	25.757	25.257	26.257	0								0	0	0	0.32997	1	8841	8841		47.96	0	1		+		40194	19376	27021	27126	40701	40701					0.053518734548106295
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(74)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.5290832519531	3	381.529352	1141.56623	0.52975	0.00020211	-0.80744	-0.00030806	-0.2777	-0.00010595	381.52905058905066	15.691	0.095345	15.691	15.624	15.719	0					11	4	3	0	0	0	0.24329	1	3455	3455		74.165	41.353	1	298780			40195	5397	27022	27127	40702	40702	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(69)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.2911376953125	2	571.790389	1141.56623	1.0955	0.00062641	-1.0542	-0.00060276	0.04136	2.3649E-05	571.7898803604592	15.686	0.11764	15.686	15.617	15.735	0					16	5	4	0	0	0	0.28675	1	3443	3443		68.846	14.07	1	431670			40196	5397	27022	27127	40703	40703	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(62)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.52923583984375	3	381.529352	1141.56623	0.8298	0.00031659	-1.4725	-0.00056181	-0.64271	-0.00024521	381.5289096926717	15.984	0.3108	15.984	15.897	16.208	0					17	7	4	0	0	0	0.34979	1	4249	4249		61.765	25.318	1	6064500			40197	5397	27022	27127	40704	40704	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(97)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.791015625	2	571.790389	1141.56623	-0.051961	-2.9711E-05	0.99867	0.00057103	0.94671	0.00054132	571.7909812913673	15.974	0.34983	15.974	15.886	16.236	0					15	8	2	0	0	0	0.092915	1	4243	4243		96.665	47.224	1	3889500			40198	5397	27022	27127	40705	40705	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(76)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.790771484375	2	571.790389	1141.56623	-0.22938	-0.00013116	-0.065877	-3.7668E-05	-0.29526	-0.00016883	571.7905544877193	15.71	0.090788	15.71	15.661	15.752	0					5	3	2	0	0	0	0.22691	1	3625	3625		76.17	14.478	1	157280			40199	5397	27022	27127	40706	40706	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(87)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.5293884277344	3	381.529352	1141.56623	0.21407	8.1674E-05	-0.41727	-0.0001592	-0.20321	-7.7529E-05	381.52931659200874	15.937	0.26318	15.937	15.834	16.097	0					11	5	3	0	0	0	0.14893	1	4467	4467		86.882	50.435	1	5406900			40200	5397	27022	27127	40707	40707	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(97)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.7906494140625	2	571.790389	1141.56623	0.0010822	6.1879E-07	0.42236	0.0002415	0.42345	0.00024212	571.7906360209242	15.954	0.21493	15.954	15.849	16.064	0					8	4	3	0	0	0	0.092915	1	4453	4453		96.665	52.288	1	892230			40201	5397	27022	27127	40708	40708	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(74)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	381.52923583984375	3	381.529352	1141.56623	0.28061	0.00010706	-0.77721	-0.00029653	-0.4966	-0.00018947	381.52914442630345	15.754	0.10979	15.754	15.678	15.788	0					11	4	4	0	0	0	0.24329	1	3595	3595		74.165	36.353	1	250990			40202	5397	27022	27127	40709	40709	222				0.0011051820029024384
SVCEGKGLHR	10	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))EGKGLHR_	SVC(1)EGKGLHR		SVC(81)EGKGLHR		0	1	0		ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5292663574219	3	381.529352	1141.56623	-0.51905	-0.00019803	0.39127	0.00014928	-0.12778	-4.8751E-05	381.52961167953407	15.952	0.26567	15.952	15.849	16.114	0					13	5	4	0	0	0	0.18814	1	4308	4308		80.916	36.539	1	1524100			40203	5397	27022	27127	40710	40710	222				0.0011051820029024384
SVCGKGFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKGFSR_	SVC(1)GKGFSR		SVC(87)GKGFSR		0	1	0		ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2477111816406	2	499.247826	996.481099	-0.051555	-2.5739E-05	-0.17714	-8.8436E-05	-0.22869	-0.00011417	499.2476886842191	17.877	0.24564	17.877	17.792	18.037	0					10	6	2	0	0	0	0.073657	1	4354	4354		86.882	35.546	1	953230			40204	4081	27023	27128	40711	40711	176				-0.017282272654938424
SVCGKGFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKGFSR_	SVC(1)GKGFSR		SVC(85)GKGFSR		0	1	0		ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.24755859375	2	499.247826	996.481099	-0.20811	-0.0001039	-0.51106	-0.00025514	-0.71916	-0.00035904	499.24773483011717	18.167	0.5331	18.167	18.067	18.6	0					22	12	4	0	0	0	0.079477	1	5269	5269		84.817	35.376	1	5388600			40205	4081	27023	27128	40712	40712	176				-0.017282272654938424
SVCGKGFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKGFSR_	SVC(1)GKGFSR		SVC(47)GKGFSR		0	1	0		ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.1676025390625	3	333.167643	996.481099	0.52117	0.00017364	-0.99154	-0.00033035	-0.47037	-0.00015671	333.1673887449967	18.167	0.36363	18.167	18.067	18.431	0					13	8	3	0	0	0	0.33548	1	5272	5272		47.228	7.9748	1	1646900			40206	4081	27023	27128	40713	40713	176				-0.017282272654938424
SVCGKGFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKGFSR_	SVC(1)GKGFSR		SVC(79)GKGFSR		0	1	0		ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.24774169921875	2	499.247826	996.481099	-1.0572	-0.00052778	0.88902	0.00044384	-0.16813	-8.3939E-05	499.24819055438604	17.875	0.16658	17.875	17.831	17.998	0					8	4	3	0	0	0	0.099758	1	4575	4575		79.489	15.282	1	270190			40207	4081	27023	27128	40714	40714	176				-0.017282272654938424
SVCGKGFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKGFSR_	SVC(1)GKGFSR		SVC(67)GKGFSR		0	1	0		ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2474365234375	2	499.247826	996.481099	-1.2007	-0.00059946	0.55595	0.00027756	-0.64478	-0.00032191	499.24819835405634	17.903	0.21169	17.903	17.815	18.026	0					8	5	3	0	0	0	0.15558	1	4572	4572		66.962	8.18	1	296190			40208	4081	27023	27128	40715	40715	176				-0.017282272654938424
SVCGKGFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKGFSR_	SVC(1)GKGFSR		SVC(82)GKGFSR		0	1	0		ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2476501464844	2	499.247826	996.481099	0.86074	0.00042972	-1.3971	-0.00069748	-0.53631	-0.00026775	499.2472546058311	18.147	0.42087	18.147	18.038	18.459	0					17	8	4	0	0	0	0.090954	1	5529	5529		81.525	39.129	1	2844300			40209	4081	27023	27128	40716	40716	176				-0.017282272654938424
SVCGKGFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKGFSR_	SVC(1)GKGFSR		SVC(97)GKGFSR		0	1	0		ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENSG00000136451|ENST00000581208|VEZF1	ENSG00000136451|ENST00000581208|VEZF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2480773925781	2	499.247826	996.481099	-0.65909	-0.00032905	0.7123	0.00035562	0.053209	2.6565E-05	499.2483335958059	18.13	0.32227	18.13	18.022	18.344	0					15	6	3	0	0	0	0.046074	1	5520	5520		96.665	34.558	1	2693000			40210	4081	27023	27128	40717	40717	176				-0.017282272654938424
SVCGKSFHR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFHR_	SVC(1)GKSFHR		SVC(43)GKSFHR		0	1	0		ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.8470153808594	3	359.846792	1076.51855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.341	1	16.341	15.841	16.841	0								0	0	0	0.25587	1	3702	3702		42.864	16.171	1				40211	1393	27024	27129	40718	40718	53				-0.016651359999059423
SVCGKSFHR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFHR_	SVC(1)GKSFHR		SVC(69)GKSFHR		0	1	0		ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.267578125	2	539.26655	1076.51855	0.88476	0.00047712	-0.051549	-2.7799E-05	0.83321	0.00044932	539.2666383066672	16.343	0.16103	16.343	16.286	16.447	0					9	6	2	0	0	0	0.14578	1	3698	3698		68.846	14.124	1	162640			40212	1393	27024	27129	40719	40719	53				-0.016651359999059423
SVCGKSFHR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFHR_	SVC(1)GKSFHR		SVC(74)GKSFHR		0	1	0		ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2667846679688	2	539.26655	1076.51855	0.25034	0.000135	0.34245	0.00018467	0.59279	0.00031967	539.2668240060678	16.616	0.37749	16.616	16.481	16.858	0					12	9	2	0	0	0	0.12278	1	4527	4527		74.165	26.508	1	995170			40213	1393	27024	27129	40720	40720	53				-0.016651359999059423
SVCGKSFHR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFHR_	SVC(1)GKSFHR		SVC(71)GKSFHR		0	1	0		ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2666015625	2	539.26655	1076.51855	-0.055751	-3.0065E-05	0.12584	6.7864E-05	0.070093	3.7799E-05	539.2665319510053	16.343	0.085924	16.343	16.282	16.368	0					6	3	2	0	0	0	0.13726	1	3896	3896		70.816	23.159	1	259250			40214	1393	27024	27129	40721	40721	53				-0.016651359999059423
SVCGKSFHR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFHR_	SVC(1)GKSFHR		SVC(69)GKSFHR		0	1	0		ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2667846679688	2	539.26655	1076.51855	0.30292	0.00016335	0.068808	3.7106E-05	0.37173	0.00020046	539.2664994571833	16.555	0.4052	16.555	16.396	16.801	0					14	8	3	0	0	0	0.14578	1	4762	4762		68.846	22.874	1	1145900			40215	1393	27024	27129	40722	40722	53				-0.016651359999059423
SVCGKSFHR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFHR_	SVC(1)GKSFHR		SVC(48)GKSFHR		0	1	0		ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8466491699219	3	359.846792	1076.51855	-0.065097	-2.3425E-05	-0.8098	-0.00029141	-0.8749	-0.00031483	359.84654278098577	16.557	0.36037	16.557	16.499	16.859	0					12	7	3	0	0	0	0.3269	1	4617	4617		47.96	12.341	1	475010			40216	1393	27024	27129	40723	40723	53				-0.016651359999059423
SVCGKSFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFSR_	SVC(1)GKSFSR		SVC(82)GKSFSR		0	1	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.25341796875	2	514.253108	1026.49166	0.082728	4.2543E-05	-0.51343	-0.00026403	-0.4307	-0.00022149	514.253080689723	18.104	0.15771	18.104	18.026	18.184	0					11	5	3	0	0	0	0.090954	1	4444	4444		81.525	32.083	1	601870			40217	8122	27025	27130	40724	40724	354				-0.020522446110817327
SVCGKSFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFSR_	SVC(1)GKSFSR		SVC(94)GKSFSR		0	1	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2531127929688	2	514.253108	1026.49166	0.02084	1.0717E-05	0.22264	0.00011449	0.24348	0.00012521	514.2533666262925	18.424	0.52045	18.424	18.282	18.803	0					23	12	3	0	0	0	0.052435	1	5375	5375		94.409	37.688	1	2390700			40218	8122	27025	27130	40725	40725	354				-0.020522446110817327
SVCGKSFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFSR_	SVC(1)GKSFSR		SVC(58)GKSFSR		0	1	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.25341796875	2	514.253108	1026.49166	0.00415	2.1341E-06	-0.63136	-0.00032468	-0.62721	-0.00032254	514.2529953741813	18.122	0.12728	18.122	18.051	18.179	0					10	4	3	0	0	0	0.22823	1	4672	4672		58.246	15.85	1	405400			40219	8122	27025	27130	40726	40726	354				-0.020522446110817327
SVCGKSFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFSR_	SVC(1)GKSFSR		SVC(110)GKSFSR		0	1	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2532958984375	2	514.253108	1026.49166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.354	1	18.354	17.854	18.854	0								0	0	0	0.0098509	1	5619	5619		109.83	33.056	1				40220	8122	27025	27130	40727	40727	354				-0.020522446110817327
SVCGKSFSR	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))GKSFSR_	SVC(1)GKSFSR		SVC(57)GKSFSR		0	1	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2528686523438	2	514.253108	1026.49166	-1.6104	-0.00082816	1.3752	0.00070722	-0.23519	-0.00012095	514.2537865032647	18.186	0.13058	18.186	18.135	18.266	0					7	3	3	0	0	0	0.24169	1	4706	4706		56.632	8.9749	1	241040			40221	8122	27025	27130	40728	40728	354				-0.020522446110817327
SVCLVCLFGLL	11	Unmodified	_SVCLVCLFGLL_					0	0	0			REV__ENST00000538862.6_1_12:6957987-6958203:-|nuORF	REV__ENST00000538862.6_1_12:6957987-6958203:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	389.5474548339844	3	389.548584	1165.62392	0.55893	0.00021773	-3.6905	-0.0014376	-3.1315	-0.0012199	389.5472047890843	20.882	0.10105	20.882	20.832	20.933	0					5	3	2	0	0	0	0.575	1	5670	5670		38.754	2.436	1	129650	+		40222	20119	27026	27131	40729	40729					0.04773644081524253
SVCLVEGAVG	10	Unmodified	_SVCLVEGAVG_					0	0	0		ENST00000156825.5_1_19:1576713-1576977:-|nuORF	ENST00000156825.5_1_19:1576713-1576977:-|nuORF	ENST00000156825.5_1_19:1576713-1576977:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.238525390625	2	467.239135	932.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.726	1	32.726	32.226	33.226	0								0	0	0	0.3428	1	10937	10937		44.117	0	1				40223	8144	27027	27132	40730	40730					-0.005215675911699691
SVCRGLKKGK	10	Unmodified	_SVCRGLKKGK_					0	0	0		TERF2|p.E87Rfs*72|1|0.63|ENSG00000132604|chr16:69385713-69385713|C/-|frameshift_variant	TERF2|p.E87Rfs*72|1|0.63|ENSG00000132604|chr16:69385713-69385713|C/-|frameshift_variant	TERF2|p.E87Rfs*72|1|0.63|ENSG00000132604|chr16:69385713-69385713|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2183532714844	3	359.218337	1074.63318	1.2708	0.00045651	-1.7897	-0.00064291	-0.51891	-0.0001864	359.21786988083034	13.011	0.19644	13.011	12.963	13.159	0					13	4	4	0	0	0	0.44601	1	2924	2924		63.426	11.899	1	332540			40224	22522	27028	27133	40731	40731					0.09885173482052778
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(62)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.8741760253906	3	363.874348	1088.60121	0.46506	0.00016922	-0.83318	-0.00030317	-0.36812	-0.00013395	363.87413802337534	30.026	0.37527	30.026	29.928	30.303	0					37	13	4	0	0	0	0.19952	1	9507	9507		61.691	21.633	1	4603500			40225	6672	27029	27134	40732	40732	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(100)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.307861328125	2	545.307884	1088.60121	1.1893	0.00064854	-1.8234	-0.00099429	-0.63404	-0.00034575	545.3068198415082	30.021	0.37353	30.021	29.949	30.323	0					30	13	3	0	0	0	0.035062	1	9510	9510		104.06	32.179	1	946130			40226	6672	27029	27134	40733	40733	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(78)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.87420654296875	3	363.874348	1088.60121	0.74117	0.00026969	-1.3174	-0.00047935	-0.5762	-0.00020966	363.8740916588713	30.328	1.0965	30.328	30.206	31.302	0					63	26	6	0	0	0	0.10506	1	10896	10896		78.264	33.242	1	22661000			40227	6672	27029	27134	40734	40734	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(100)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3085327148438	2	545.307884	1088.60121	0.39871	0.00021742	-0.38331	-0.00020902	0.0154	8.3979E-06	545.3078618259422	30.319	0.37164	30.319	30.195	30.566	0					35	9	6	0	0	0	0.035062	1	10889	10889		104.06	13.687	1	9359000			40228	6672	27029	27134	40735	40735	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(64)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.8741149902344	3	363.874348	1088.60121	3.58	0.0013027	-3.5082	-0.0012765	0.071868	2.6151E-05	363.872919816175	30.056	0.16617	30.056	29.99	30.156	0					9	6	2	0	0	0	0.18416	1	9848	9848		63.534	23.476	1	51152			40229	6672	27029	27134	40736	40736	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(100)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3089599609375	2	545.307884	1088.60121	-0.2287	-0.00012471	0.73267	0.00039953	0.50397	0.00027482	545.3085073473611	30.073	0.30422	30.073	29.974	30.278	0					31	11	4	0	0	0	0.035062	1	9827	9827		104.06	45.275	1	1235000			40230	6672	27029	27134	40737	40737	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(60)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.8741760253906	3	363.874348	1088.60121	0.28222	0.00010269	-0.6426	-0.00023383	-0.36038	-0.00013113	363.87416445753144	30.285	0.33774	30.285	30.192	30.529	0					15	7	3	0	0	0	0.21419	1	11294	11294		59.931	14.909	1	684470			40231	6672	27029	27134	40738	40738	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(130)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3078002929688	2	545.307884	1088.60121	0.33001	0.00017996	-0.24132	-0.00013159	0.088694	4.8365E-05	545.3078841495951	30.302	0.60709	30.302	30.163	30.77	0					40	13	5	0	0	0	0.016683	1	11279	11279		127.46	37.092	1	7183800			40232	6672	27029	27134	40739	40739	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(71)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.87420654296875	3	363.874348	1088.60121	0.38127	0.00013873	-0.52013	-0.00018926	-0.13886	-5.0527E-05	363.8742349107721	30.085	0.38324	30.085	29.986	30.369	0					22	9	4	0	0	0	0.13726	1	10189	10189		70.816	32.063	1	1032800			40233	6672	27029	27134	40740	40740	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(76)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.8743591308594	3	363.874348	1088.60121	-0.10206	-3.7138E-05	-0.57946	-0.00021085	-0.68153	-0.00024799	363.8742647101617	30.068	0.38114	30.068	29.971	30.352	0					25	9	4	0	0	0	0.11411	1	10186	10186		76.17	42.248	1	1809200			40234	6672	27029	27134	40741	40741	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(58)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.874267578125	3	363.874348	1088.60121	-0.099869	-3.634E-05	-0.54567	-0.00019856	-0.64554	-0.0002349	363.87430839863305	30.253	0.99402	30.253	30.099	31.093	0					42	20	5	0	0	0	0.22823	1	11163	11163		58.246	10.287	1	21151000			40235	6672	27029	27134	40742	40742	284				0.060457610082494284
SVCVLDLRK	9	Carbamidomethyl (C)	_SVC(Carbamidomethyl (C))VLDLRK_	SVC(1)VLDLRK		SVC(65)VLDLRK		0	1	0		ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X|p.G568S|1|0.45|ENSG00000101849|chrX:9714998-9714998|G/A|missense_variant	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.874267578125	3	363.874348	1088.60121	1.0918	0.00039729	-1.6272	-0.00059211	-0.53541	-0.00019482	363.87388412494124	30.238	1.1439	30.238	30.131	31.275	0					54	23	4	0	0	0	0.17062	1	11156	11156		65.157	17.93	1	22850000			40236	6672	27029	27134	40743	40743	284				0.060457610082494284
SVDEWIKR	8	Unmodified	_SVDEWIKR_					0	0	0		tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7789916992188	2	516.777274	1031.53999	0.32106	0.00016592	2.9742	0.001537	3.2953	0.0017029	516.7787476662537	24.579	0.12352	24.579	24.53	24.653	0					7	3	3	0	0	0	0.44433	1	7280	7280		65.803	0.33779	1	154250			40237	22674	27030	27135	40744	40744					0.02548572300474916
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7398681640625	2	458.740357	915.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.536	1	17.536	17.036	18.036	0								0	0	0	0.04624	1	4199	4199		87.696	8.2454	1				40238	3103	27031	27136	40745	40745					0.005046041381433497
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7402038574219	2	458.740357	915.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.864	1	17.864	17.364	18.364	0								0	0	0	0.095784	1	5117	5117		72.879	11.907	1				40239	3103	27031	27136	40746	40746					0.005046041381433497
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7403869628906	2	458.740357	915.46616	-0.96	-0.00044039	0.8411	0.00038585	-0.11889	-5.4542E-05	458.7407502237778	17.583	0.23279	17.583	17.469	17.701	0					16	7	3	0	0	0	0.10506	1	4417	4417		78.264	24.912	1	176750			40240	3103	27031	27136	40747	40747					0.005046041381433497
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.74005126953125	2	458.740357	915.46616	0.72211	0.00033126	-1.049	-0.0004812	-0.32685	-0.00014994	458.73975430669043	17.844	0.421	17.844	17.684	18.105	0					19	8	4	0	0	0	0.035062	1	5358	5358		104.06	27.283	1	1824700			40241	3103	27031	27136	40748	40748					0.005046041381433497
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.74017333984375	2	458.740357	915.46616	0.082427	3.7813E-05	-0.25449	-0.00011675	-0.17206	-7.8933E-05	458.7401737590003	17.647	0.21853	17.647	17.533	17.751	0					11	5	3	0	0	0	0.27249	1	4415	4415		52.937	13.684	1	283520			40242	3103	27031	27136	40749	40749					0.005046041381433497
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7400817871094	2	458.740357	915.46616	0.88018	0.00040377	-1.3339	-0.00061193	-0.45376	-0.00020816	458.7396419539522	17.826	0.36365	17.826	17.615	17.978	0					19	7	4	0	0	0	0.078509	1	5202	5202		85.161	16.374	1	1336300			40243	3103	27031	27136	40750	40750					0.005046041381433497
SVDGSLTHT	9	Unmodified	_SVDGSLTHT_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.72198486328125	2	458.722164	915.429775	-0.65461	-0.00030028	0.37732	0.00017309	-0.27728	-0.0001272	458.72233765728697	17.812	0.25705	17.812	17.685	17.942	0					17	6	4	0	0	0	0.18605	1	5082	5082		63.306	4.5243	1	562870			40244	11480	27032	27137	40751	40751					-0.03132272758580257
SVDGVILTK	9	Unmodified	_SVDGVILTK_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2764892578125	2	466.276575	930.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.681	1	33.681	33.181	34.181	0								0	0	0	0.3304	1	10973	10973		29.15	0	1				40245	23056	27033	27138	40752	40752					0.07054938211706485
SVDGVILTK	9	Unmodified	_SVDGVILTK_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2765808105469	2	466.276575	930.538597	-0.92078	-0.00042934	0.30914	0.00014415	-0.61164	-0.00028519	466.27684206336096	27.897	0.17314	27.897	27.793	27.966	0					16	6	3	0	0	0	0.35021	1	8925	8925		45.972	1.5951	1	334640			40246	23056	27033	27138	40753	40753					0.07054938211706485
SVDIIQKKRK	10	Unmodified	_SVDIIQKKRK_					0	0	0		CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant	CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant	CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	405.5929870605469	3	405.590828	1213.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.443	1	17.443	16.943	17.943	0								0	0	0	0.4201	1	4371	4371		16.007	1.3131	1				40247	362	27034	27139	40754	40754					0.15233029622504546
SVDIVFVVN	9	Unmodified	_SVDIVFVVN_					0	0	0			REV__ITIH6|p.Q800Rfs*102|1|0.21|ENSG00000102313|chrX:54757676-54757676|G/-|frameshift_variant	REV__ITIH6|p.Q800Rfs*102|1|0.21|ENSG00000102313|chrX:54757676-54757676|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2786560058594	2	496.276575	990.538597	2.8675	0.0014231	-1.8204	-0.00090341	1.0471	0.00051964	496.27546210239456	42.616	0.39297	42.616	42.535	42.928	0					19	11	2	0	0	0	0.39215	1	17030	17030		42.396	1.618	1	98846	+		40248	13633	27035	27140	40755	40755					0.04294938211717181
SVDKENLK	8	Unmodified	_SVDKENLK_					0	0	0			REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7557067871094	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.11	1	24.11	23.61	24.61	0								0	0	0	1.7419	1	8270	8270		49.442	1.7842	1		+		40249	21755	27036	27141	40756	40756					0.02897177172235388
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3193969726562	2	515.318774	1028.623	1.3035	0.00067172	-0.65018	-0.00033505	0.65333	0.00033667	515.3183903249089	23.374	0.29326	23.374	23.26	23.553	0					21	9	4	0	0	0	0.017421	1	6749	6749		126.24	0	1	1210800			40250	10336	27037	27142	40757	40757					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3189697265625	2	515.318774	1028.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.675	1	23.675	23.175	24.175	0								0	0	0	0.0026034	1	7871	7871		150.36	0	1				40251	10336	27037	27142	40758	40758					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3190307617188	2	515.318774	1028.623	-0.11077	-5.7081E-05	0.44596	0.00022981	0.3352	0.00017273	515.3189102940358	23.428	0.2806	23.428	23.338	23.619	0					28	10	4	0	0	0	0.017421	1	7027	7027		126.24	0	1	2327300			40252	10336	27037	27142	40759	40759					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.8816833496094	3	343.881608	1028.623	-0.75927	-0.0002611	0.5087	0.00017493	-0.25056	-8.6165E-05	343.8817854958649	23.428	0.23603	23.428	23.338	23.574	0					14	8	3	0	0	0	0.19605	1	7030	7030		88.177	0	1	738300			40253	10336	27037	27142	40760	40760					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3189697265625	2	515.318774	1028.623	1.4121	0.00072768	-0.97429	-0.00050207	0.4378	0.00022561	515.31815735031	23.654	0.36952	23.654	23.545	23.915	0					17	7	4	0	0	0	0.0088974	1	8164	8164		143.37	0	1	12141000			40254	10336	27037	27142	40761	40761					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3198852539062	2	515.318774	1028.623	1.0878	0.00056057	0.81074	0.00041779	1.8986	0.00097836	515.3191494449143	23.454	0.14671	23.454	23.356	23.502	0					5	3	2	0	0	0	0.082776	1	7170	7170		83.647	0	1	104520			40255	10336	27037	27142	40762	40762					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3189086914062	2	515.318774	1028.623	0.70873	0.00036522	-0.22141	-0.0001141	0.48732	0.00025113	515.3185973046207	23.474	0.27377	23.474	23.341	23.614	0					18	6	4	0	0	0	5.4275E-05	1	7162	7162		195.05	0	1	1431800			40256	10336	27037	27142	40763	40763					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3187866210938	2	515.318774	1028.623	0.1548	7.9772E-05	0.12087	6.2286E-05	0.27567	0.00014206	515.3188285343813	23.642	0.26296	23.642	23.484	23.747	0					10	5	3	0	0	0	0.017421	1	8031	8031		126.24	0	1	993070			40257	10336	27037	27142	40764	40764					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3189697265625	2	515.318774	1028.623	1.5017	0.00077387	-1.3336	-0.00068722	0.16814	8.6645E-05	515.3180527203083	23.626	0.61253	23.626	23.518	24.13	0					22	12	5	0	0	0	0.0088974	1	8022	8022		143.37	0	1	15317000			40258	10336	27037	27142	40765	40765					0.10982889028446152
SVDKSKPDK	9	Unmodified	_SVDKSKPDK_					0	0	0		SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant;SNAPC1|p.F213Lfs*7|2|0.15|ENSG00000023608|chr14:61776193-61776193|T/-|frameshift_variant;ENSG00000023608|ENST00000216294|SNAPC1	SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant	SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.27496337890625	2	502.274564	1002.53457	0.97438	0.00048941	-0.91216	-0.00045816	0.062223	3.1253E-05	502.27392265000043	10.989	0.045352	10.989	10.95	10.995	0					4	2	2	0	0	0	0.18505	1	2148	2148		56.434	0	1	49332			40259	1121	27038	27143	40766	40766					0.03340848718005418
SVDKSVIVY	9	Unmodified	_SVDKSVIVY_					0	0	0		ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2823486328125	2	505.281857	1008.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.487	1	33.487	32.987	33.987	0								0	0	0	0.1633	1	10894	10894		56.721	12.604	1				40260	7329	27039	27144	40767	40767					0.0452292086615671
SVDKSVIVY	9	Unmodified	_SVDKSVIVY_					0	0	0		ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.281982421875	2	505.281857	1008.54916	0.80564	0.00040707	-0.57696	-0.00029153	0.22867	0.00011554	505.2815034916575	33.744	0.31024	33.744	33.62	33.931	0					18	8	3	0	0	0	0.07136	1	12500	12500		87.696	41.744	1	570220			40261	7329	27039	27144	40768	40768					0.0452292086615671
SVDKSVIVY	9	Unmodified	_SVDKSVIVY_					0	0	0		ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2820129394531	2	505.281857	1008.54916	0.090566	4.5761E-05	0.11842	5.9837E-05	0.20899	0.0001056	505.2818128122066	33.521	0.2019	33.521	33.426	33.628	0					7	5	2	0	0	0	0.36892	1	11779	11779		44.377	0	1	47111			40262	7329	27039	27144	40769	40769					0.0452292086615671
SVDKSVIVY	9	Unmodified	_SVDKSVIVY_					0	0	0		ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2816162109375	2	505.281857	1008.54916	-0.31365	-0.00015848	0.61405	0.00031027	0.3004	0.00015179	505.28218825316657	33.708	0.2761	33.708	33.6	33.876	0					13	6	3	0	0	0	0.27249	1	12828	12828		52.937	3.4952	1	527800			40263	7329	27039	27144	40770	40770					0.0452292086615671
SVDLPKHAK	9	Unmodified	_SVDLPKHAK_					0	0	0		ENSG00000095203|ENST00000374566|EPB41L4B;nc|ENSG00000095203|Q9H329-2|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7873229980469	2	497.787641	993.56073	-0.055822	-2.7788E-05	-0.19136	-9.5259E-05	-0.24719	-0.00012305	497.78761555855493	17.2	0.34533	17.2	16.952	17.297	0					28	11	4	0	0	0	0.0406	1	4021	4021		98.629	36.522	1	395920			40264	1896	27040	27145	40771	40771					0.06369162680141471
SVDLPKHAK	9	Unmodified	_SVDLPKHAK_					0	0	0		ENSG00000095203|ENST00000374566|EPB41L4B;nc|ENSG00000095203|Q9H329-2|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.787353515625	2	497.787641	993.56073	-0.28045	-0.0001396	-0.041741	-2.0778E-05	-0.32219	-0.00016038	497.7876076038508	17.536	0.60813	17.536	17.088	17.696	0					47	15	4	0	0	0	0.021961	1	4905	4905		118.74	52.314	1	2836700			40265	1896	27040	27145	40772	40772					0.06369162680141471
SVDLPKHAK	9	Unmodified	_SVDLPKHAK_					0	0	0		ENSG00000095203|ENST00000374566|EPB41L4B;nc|ENSG00000095203|Q9H329-2|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7873229980469	2	497.787641	993.56073	-1.3247	-0.00065941	0.7765	0.00038653	-0.54818	-0.00027288	497.78810199005704	17.244	0.23802	17.244	17.069	17.307	0					13	7	2	0	0	0	0.028876	1	4274	4274		110.12	51.89	1	162490			40266	1896	27040	27145	40773	40773					0.06369162680141471
SVDLPKHAK	9	Unmodified	_SVDLPKHAK_					0	0	0		ENSG00000095203|ENST00000374566|EPB41L4B;nc|ENSG00000095203|Q9H329-2|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.787841796875	2	497.787641	993.56073	-0.71672	-0.00035677	0.62438	0.00031081	-0.09234	-4.5966E-05	497.7879095209164	17.475	0.55337	17.475	17.081	17.634	0					27	11	4	0	0	0	0.037569	1	5184	5184		101.6	27.626	1	907230			40267	1896	27040	27145	40774	40774					0.06369162680141471
SVDLSRLPLE	10	Unmodified	_SVDLSRLPLE_					0	0	0			REV__ENST00000536416.5_1_12:121783870-121790143:-|nuORF	REV__ENST00000536416.5_1_12:121783870-121790143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.2137451171875	3	376.880156	1127.61864	-0.40758	-0.00015361	-2.0292	-0.00076477	-2.4368	-0.00091837	376.8793568421128	18.793	0.14452	18.793	18.719	18.863	0					5	3	2	0	0	0	0.70877	1	5715	5715		26.063	2.6855	1	267790	+		40268	20106	27041	27146	40775	40775					0.059933798148904316
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.277099609375	2	524.277106	1046.53966	0.71443	0.00037456	-0.26731	-0.00014014	0.44713	0.00023442	524.2767975010795	18.884	0.38492	18.884	18.646	19.031	0					33	11	4	0	0	0	0.12239	1	4758	4758		74.255	7.8258	1	551340			40269	3421	27042	27147	40776	40776					0.01825152580613576
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2774658203125	2	524.277106	1046.53966	0.40598	0.00021285	0.13036	6.8345E-05	0.53634	0.00028119	524.2771842476109	18.894	0.42063	18.894	18.697	19.117	0					39	13	4	0	0	0	0.14603	1	4963	4963		68.787	4.5796	1	2105800			40270	3421	27042	27147	40777	40777					0.01825152580613576
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2772827148438	2	524.277106	1046.53966	0.077702	4.0737E-05	0.17704	9.2819E-05	0.25474	0.00013356	524.2772442330817	19.106	0.51289	19.106	18.85	19.363	0					35	10	4	0	0	0	0.035062	1	5944	5944		104.06	4.6818	1	11678000			40271	3421	27042	27147	40778	40778					0.01825152580613576
SVDPNQYYK	9	Unmodified	_SVDPNQYYK_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7642822265625	2	557.264196	1112.51384	1.7178	0.00095729	-2.3428	-0.0013056	-0.62499	-0.00034828	557.763728378114	27.646	0.35941	27.646	27.455	27.815	0					11	7	2	0	0	0	0.48389	1	10037	10037		34.173	2.6427	1	450000			40272	1371	27043	27148	40779	40779					-0.03791741661666492
SVDPRRRNK	9	Unmodified	_SVDPRRRNK_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627907-89628201:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	376.5513916015625	3	376.551256	1126.63194	0.51185	0.00019274	-0.3774	-0.00014211	0.13445	5.0628E-05	376.5512106880032	12.702	0.37365	12.702	12.533	12.907	0					48	21	4	0	0	0	0.61124	1	2400	2400		19.997	1.4657	1	388920			40273	5997	27044	27149	40780	40780					0.07368675437510319
SVDPRRRNK	9	Unmodified	_SVDPRRRNK_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627907-89628201:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.32373046875	2	564.323245	1126.63194	0.37265	0.0002103	0.25172	0.00014205	0.62437	0.00035235	564.3234555936352	12.93	0.74525	12.93	12.711	13.456	0					41	20	3	0	0	0	0.61124	1	2790	2790		6.3127	0	1	1595200			40274	5997	27044	27149	40781	40781					0.07368675437510319
SVDPRRRNK	9	Unmodified	_SVDPRRRNK_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627907-89628201:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.55096435546875	3	376.551256	1126.63194	0.30918	0.00011642	0.00099486	3.7461E-07	0.31017	0.0001168	376.5512493331066	12.707	0.30101	12.707	12.556	12.858	0					37	17	3	0	0	0	0.5741	1	2451	2451		24.519	5.4157	1	303040			40275	5997	27044	27149	40782	40782					0.07368675437510319
SVDPRRRNK	9	Unmodified	_SVDPRRRNK_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627907-89628201:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.55206298828125	3	376.551256	1126.63194	-0.12713	-4.7872E-05	0.31059	0.00011695	0.18345	6.908E-05	376.55140008568264	12.724	0.37016	12.724	12.5	12.87	0					39	21	3	0	0	0	0.61124	1	2449	2449		19.997	3.99	1	282930			40276	5997	27044	27149	40783	40783					0.07368675437510319
SVDPRRRNK	9	Unmodified	_SVDPRRRNK_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627907-89628201:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	376.551025390625	3	376.551256	1126.63194	-0.40109	-0.00015103	0.05316	2.0018E-05	-0.34793	-0.00013101	376.55127152546174	12.895	0.8731	12.895	12.625	13.498	0					49	19	4	0	0	0	0.46194	2	2803	2803;2978		36.447	36.447	1	2128700			40277	5997	27044	27149	40784;40785	40784					0.07368675437510319
SVDPVSVNR	9	Unmodified	_SVDPVSVNR_					0	0	0		ENST00000468970.1_1_1:150804279-150808966:-|nuORF;nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.75830078125	2	486.759081	971.503609	-0.043588	-2.1217E-05	-0.76764	-0.00037366	-0.81123	-0.00039487	486.7584701527291	24.399	0.17253	24.399	24.343	24.516	0					8	5	2	0	0	0	0.38666	1	7207	7207		42.864	0.46813	1	59500			40278	4555	27045	27150	40786	40786					0.016716954037633514
SVDPVSVNR	9	Unmodified	_SVDPVSVNR_					0	0	0		ENST00000468970.1_1_1:150804279-150808966:-|nuORF;nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7585144042969	2	486.759081	971.503609	-0.085273	-4.1507E-05	-1.8641	-0.00090735	-1.9493	-0.00094886	486.75861215425056	24.668	0.26538	24.668	24.463	24.729	0					10	5	3	0	0	0	0.085655	1	8673	8673		82.75	31.558	1	359500			40279	4555	27045	27150	40787	40787					0.016716954037633514
SVDPVSVNR	9	Unmodified	_SVDPVSVNR_					0	0	0		ENST00000468970.1_1_1:150804279-150808966:-|nuORF;nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7585754394531	2	486.759081	971.503609	-0.54519	-0.00026538	-2.7551	-0.0013411	-3.3003	-0.0016065	486.7580639866129	24.636	0.49921	24.636	24.48	24.979	0					17	10	3	0	0	0	0.34452	1	8535	8535		46.457	5.6786	1	453330			40280	4555	27045	27150	40788	40788					0.016716954037633514
SVDQAGKYSK	10	Unmodified	_SVDQAGKYSK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.7774047851562	2	541.77747	1081.54039	1.0876	0.00058925	-0.25162	-0.00013632	0.836	0.00045293	541.7771502302227	15.545	0.16437	15.545	15.483	15.648	0					15	6	3	0	0	0	0.17524	1	3392	3392		79.489	24.767	1	356860			40281	3369	27046	27151	40789	40789					0.0028794722966267727
SVDQAGKYSK	10	Unmodified	_SVDQAGKYSK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.7781982421875	2	541.77747	1081.54039	0.29947	0.00016224	0.48419	0.00026232	0.78366	0.00042457	541.7777609687398	15.85	0.30029	15.85	15.763	16.064	0					22	7	4	0	0	0	0.0069915	1	4171	4171		160.82	74.96	1	2830700			40282	3369	27046	27151	40790	40790					0.0028794722966267727
SVDQAGKYSK	10	Unmodified	_SVDQAGKYSK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.777587890625	2	541.77747	1081.54039	-0.1513	-8.1969E-05	1.0517	0.00056976	0.90036	0.0004878	541.7779694310896	15.579	0.13605	15.579	15.51	15.646	0					12	5	3	0	0	0	0.0331	1	3577	3577		114.86	49.393	1	668160			40283	3369	27046	27151	40791	40791					0.0028794722966267727
SVDQAGKYSK	10	Unmodified	_SVDQAGKYSK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7778930664062	2	541.77747	1081.54039	0.31384	0.00017003	0.16746	9.0724E-05	0.4813	0.00026076	541.7775634791075	15.811	0.31005	15.811	15.702	16.013	0					12	6	3	0	0	0	0.0019924	1	4389	4389		166.07	69.406	1	3704600			40284	3369	27046	27151	40792	40792					0.0028794722966267727
SVDQGWAI	8	Unmodified	_SVDQGWAI_					0	0	0			REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8	REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2144775390625	2	438.216517	874.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.513	1	20.513	20.013	21.013	0								0	0	0	1.7419	1	5783	5783		42.396	1.8235	1		+		40285	21210	27047	27152	40793	40793					-0.023750500620622006
SVDRSLLL	8	Unmodified	_SVDRSLLL_					0	0	0		CDK5R1|p.R179H|1|0.29|ENSG00000176749|chr17:32488156-32488156|G/A|missense_variant;ENSG00000176749|ENST00000313401|CDK5R1	CDK5R1|p.R179H|1|0.29|ENSG00000176749|chr17:32488156-32488156|G/A|missense_variant	CDK5R1|p.R179H|1|0.29|ENSG00000176749|chr17:32488156-32488156|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7687072753906	2	451.768917	901.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.142	1	25.142	24.642	25.642	0								0	0	0	1.7419	1	7527	7527		44.117	1.7207	1				40286	461	27048	27153	40794	40794					0.06858071414524147
SVDRVISHDRD	11	Unmodified	_SVDRVISHDRD_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.5536193847656	3	433.553102	1297.63748	0.8616	0.00037355	0.76346	0.000331	1.6251	0.00070455	433.5533398891195	24.496	0.2138	24.496	24.414	24.628	0					11	4	3	0	0	0	0.63225	1	8483	8483		34.087	2.4522	1	766350			40287	5746	27049	27154	40795	40795					0.0005630943865071458
SVDRYLSI	8	Unmodified	_SVDRYLSI_					0	0	0		ENSG00000165370|ENST00000651716|GPR101;GPR101|p.S141Vfs*36|1|0.29|ENSG00000165370|chrX:137031255-137031256|-/G|frameshift_variant;ENSG00000144476|ENST00000272928|ACKR3	ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7583312988281	2	476.758549	951.502546	-0.36545	-0.00017423	0.10211	4.868E-05	-0.26334	-0.00012555	476.75854259921886	25.552	0.13936	25.552	25.514	25.654	0					7	4	2	0	0	0	0.70598	1	8143	8143		32.812	1.2826	1	40930			40288	5789	27050	27155	40796	40796					0.024854810348642786
SVDSFKNQK	9	Unmodified	_SVDSFKNQK_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7722778320312	2	526.772188	1051.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.317	1	17.317	16.817	17.817	0								0	0	0	0.018912	1	4863	4863		101.25	23.935	1				40289	1930	27051	27156	40797	40797					0.006119645752505676
SVDSLPLAK	9	Unmodified	_SVDSLPLAK_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2683410644531	2	465.26875	928.522947	-0.13827	-6.4335E-05	-0.26006	-0.000121	-0.39833	-0.00018533	465.26867631385846	31.466	0.36039	31.466	31.228	31.589	0					13	8	2	0	0	0	0.25716	1	11827	11827		54.776	5.3348	1	210920			40290	2639	27052	27157	40798	40798					0.05582651694669494
SVDSLPLAK	9	Unmodified	_SVDSLPLAK_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2684020996094	2	465.26875	928.522947	-0.491	-0.00022845	0.19156	8.9125E-05	-0.29944	-0.00013932	465.2687152872864	31.429	0.45951	31.429	31.224	31.684	0					15	9	3	0	0	0	0.27249	1	11734	11734		52.937	5.2794	1	263330			40291	2639	27052	27157	40799	40799					0.05582651694669494
SVDTVAVGLV	10	Unmodified	_SVDTVAVGLV_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000541836.5_1_16:15021147-15029115:+|nuORF;ENST00000471603.6_1_16:2149506-2153410:-|nuORF;ENST00000532739.1_1_16:16465196-16470832:+|nuORF;ENST00000537112.5_1_16:16421763-16427707:+|nuORF;ENST00000480227.5_1_16:2149506-2153780:-|nuORF;ENST00000570193.5_1_16:2149492-2150290:-|nuORF	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.27337646484375	2	480.274032	958.533512	0.032706	1.5708E-05	-1.0477	-0.00050319	-1.015	-0.00048748	480.27354244954535	31.8	0.45657	31.8	31.536	31.993	0					37	19	3	0	0	0	0.40673	1	10219	10219		55.504	2.5675	1	297670			40292	1020	27053	27158	40800	40800					0.05258634349104341
SVDVHQVYK	9	Unmodified	_SVDVHQVYK_					0	0	0		PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant;ENST00000394450.6_1_5:145205751-145214847:-|nuORF;ENST00000515475.1_1_5:145199495-145214847:-|nuORF;ENSG00000186314|ENST00000683046|PRELID2;nc|ENSG00000186314|Q8N945|PRELID2	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7830200195312	2	537.782556	1073.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.097	1	23.097	22.597	23.597	0								0	0	0	0.0537	1	6632	6632		85.161	35.719	1				40293	7132	27054	27159	40801	40801					0.016725549548937124
SVDVHQVYK	9	Unmodified	_SVDVHQVYK_					0	0	0		PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant;ENST00000394450.6_1_5:145205751-145214847:-|nuORF;ENST00000515475.1_1_5:145199495-145214847:-|nuORF;ENSG00000186314|ENST00000683046|PRELID2;nc|ENSG00000186314|Q8N945|PRELID2	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7828979492188	2	537.782556	1073.55056	2.0777	0.0011173	-0.88843	-0.00047778	1.1892	0.00063955	537.7818265490396	23.409	0.49341	23.409	23.309	23.802	0					15	11	2	0	0	0	0.032052	1	7757	7757		107.01	40.578	1	2811200			40294	7132	27054	27159	40802	40802					0.016725549548937124
SVDVHQVYK	9	Unmodified	_SVDVHQVYK_					0	0	0		PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant;ENST00000394450.6_1_5:145205751-145214847:-|nuORF;ENST00000515475.1_1_5:145199495-145214847:-|nuORF;ENSG00000186314|ENST00000683046|PRELID2;nc|ENSG00000186314|Q8N945|PRELID2	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7841186523438	2	537.782556	1073.55056	2.2297	0.0011991	-0.46403	-0.00024954	1.7657	0.00094956	537.7825395771848	23.191	0.099466	23.191	23.136	23.235	0					4	2	2	0	0	0	0.098791	1	7043	7043		79.713	23.279	1	62143			40295	7132	27054	27159	40803	40803					0.016725549548937124
SVDVHQVYK	9	Unmodified	_SVDVHQVYK_					0	0	0		PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant;ENST00000394450.6_1_5:145205751-145214847:-|nuORF;ENST00000515475.1_1_5:145199495-145214847:-|nuORF;ENSG00000186314|ENST00000683046|PRELID2;nc|ENSG00000186314|Q8N945|PRELID2	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7833862304688	2	537.782556	1073.55056	1.0191	0.00054807	0.11955	6.4294E-05	1.1387	0.00061237	537.7825214648486	23.181	0.14405	23.181	23.123	23.267	0					8	3	3	0	0	0	0.07136	1	7033	7033		87.696	21.267	1	146840			40296	7132	27054	27159	40804	40804					0.016725549548937124
SVDVHQVYK	9	Unmodified	_SVDVHQVYK_					0	0	0		PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant;ENST00000394450.6_1_5:145205751-145214847:-|nuORF;ENST00000515475.1_1_5:145199495-145214847:-|nuORF;ENSG00000186314|ENST00000683046|PRELID2;nc|ENSG00000186314|Q8N945|PRELID2	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7827758789062	2	537.782556	1073.55056	0.69536	0.00037395	-0.053363	-2.8698E-05	0.642	0.00034525	537.7824571261441	23.344	0.21619	23.344	23.235	23.451	0					10	4	3	0	0	0	0.037924	1	7889	7889		101.25	47.901	1	942890			40297	7132	27054	27159	40805	40805					0.016725549548937124
SVDVHQVYK	9	Unmodified	_SVDVHQVYK_					0	0	0		PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant;ENST00000394450.6_1_5:145205751-145214847:-|nuORF;ENST00000515475.1_1_5:145199495-145214847:-|nuORF;ENSG00000186314|ENST00000683046|PRELID2;nc|ENSG00000186314|Q8N945|PRELID2	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	PRELID2|p.N28Tfs*10|1|0.28|ENSG00000186314|chr5:145823129-145823129|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.783203125	2	537.782556	1073.55056	1.9988	0.0010749	-0.85659	-0.00046066	1.1422	0.00061425	537.7821318700971	23.327	0.31727	23.327	23.167	23.484	0					15	6	4	0	0	0	0.048471	1	7904	7904		95.815	48.158	1	2385800			40298	7132	27054	27159	40806	40806					0.016725549548937124
SVDVNKGKK	9	Unmodified	_SVDVNKGKK_					0	0	0			REV__ENSG00000122033|ENST00000381120|MTIF3	REV__ENSG00000122033|ENST00000381120|MTIF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7850646972656	2	487.785099	973.555644	0.73455	0.0003583	0.127	6.195E-05	0.86156	0.00042025	487.78529119077535	15.9	0.13529	15.9	15.813	15.949	0					5	3	2	0	0	0	0.19952	1	4200	4200		61.691	19.217	1	155670	+		40299	14326	27055	27160	40807	40807					0.06780858817523949
SVDYGKKSK	9	Unmodified	_SVDYGKKSK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000442739.1_1_22:21363397-21363730:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2769470214844	2	506.277106	1010.53966	1.0832	0.0005484	-1.0809	-0.00054723	0.0023058	1.1674E-06	506.2764803615687	12.593	0.21147	12.593	12.51	12.721	0					6	5	2	0	0	0	0.032383	1	2881	2881		106.68	34.806	1	565110			40300	3319	27056	27161	40808	40808					0.03481152580627622
SVDYGKKSK	9	Unmodified	_SVDYGKKSK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000442739.1_1_22:21363397-21363730:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2772216796875	2	506.277106	1010.53966	1.2557	0.00063574	-0.55463	-0.0002808	0.70109	0.00035494	506.2766531290774	12.574	0.1338	12.574	12.526	12.66	0					5	3	2	0	0	0	0.19605	1	2717	2717		62.107	10.772	1	239860			40301	3319	27056	27161	40809	40809					0.03481152580627622
SVDYGKKSK	9	Unmodified	_SVDYGKKSK_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000442739.1_1_22:21363397-21363730:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2774353027344	2	506.277106	1010.53966	2.9361	0.0014865	-2.3424	-0.0011859	0.59375	0.0003006	506.27598540707385	12.567	0.13864	12.567	12.51	12.649	0					5	3	2	0	0	0	0.04067	1	2710	2710		98.582	31.088	1	466530			40302	3319	27056	27161	40810	40810					0.03481152580627622
SVEDGQLLT	9	Unmodified	_SVEDGQLLT_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.24517822265625	2	481.245472	960.476391	0.5307	0.0002554	-0.93515	-0.00045004	-0.40445	-0.00019464	481.2449944035777	17.265	0.17276	17.265	17.185	17.357	0					7	4	2	0	0	0	0.48389	1	4868	4868		34.173	0	1	261850			40303	7218	27057	27162	40811	40811					-0.0054283292729451205
SVEDPTKQTK	10	Unmodified	_SVEDPTKQTK_					0	0	0		ENSG00000173548|ENST00000308527|SNX33;SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant;SNX33|p.C435Afs*62|2|0.36|ENSG00000173548|chr15:75650395-75650395|C/-|frameshift_variant	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.7960205078125	2	566.79586	1131.57717	-1.1925	-0.0006759	1.0234	0.00058007	-0.16907	-9.5828E-05	566.7962101262746	16.278	0.26248	16.278	16.115	16.377	0					11	7	2	0	0	0	0.58308	1	3795	3795		36.318	0.69936	1	76111			40304	6434	27058	27163	40812	40812					0.016641990555854136
SVEEGEKVVK	10	Unmodified	_SVEEGEKVVK_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.3009033203125	2	552.300778	1102.587	1.3183	0.00072812	-0.58116	-0.00032098	0.73718	0.00040715	552.3003451901269	18.397	0.1058	18.397	18.322	18.428	0					7	4	2	0	0	0	0.19191	1	4565	4565		80.455	23.734	1	74991			40305	3874;10265	27059	27164	40813	40813					0.03981387060957786
SVEEGEKVVK	10	Unmodified	_SVEEGEKVVK_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3013916015625	2	552.300778	1102.587	0.60863	0.00033615	0.52173	0.00028815	1.1304	0.0006243	552.3010690669513	18.679	0.13309	18.679	18.629	18.762	0					7	3	3	0	0	0	0.022799	1	5517	5517		123.21	38.047	1	347080			40306	3874;10265	27059	27164	40814	40814					0.03981387060957786
SVEEGEKVVK	10	Unmodified	_SVEEGEKVVK_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.3015747070312	2	552.300778	1102.587	-0.3773	-0.00020839	1.1105	0.00061335	0.73323	0.00040497	552.3014431076521	18.403	0.11764	18.403	18.323	18.441	0					9	4	3	0	0	0	0.041742	1	4795	4795		112.11	5.0997	1	362260			40307	3874;10265	27059	27164	40815	40815					0.03981387060957786
SVEEGEKVVK	10	Unmodified	_SVEEGEKVVK_					0	0	0		HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3012084960938	2	552.300778	1102.587	0.085364	4.7147E-05	0.49604	0.00027396	0.58141	0.00032111	552.3009104649418	18.635	0.21754	18.635	18.527	18.745	0					11	4	4	0	0	0	0.0054485	1	5742	5742		164.46	57.448	1	1839400			40308	3874;10265	27059	27164	40816	40816					0.03981387060957786
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	616.840087890625	2	616.840268	1231.66598	0.17052	0.00010518	-0.1068	-6.5879E-05	0.063717	3.9303E-05	616.8402042192913	36.543	0.2854	36.543	36.459	36.744	0					42	15	4	0	0	0	3.2002E-06	1	11973	11973		187.5	107.79	1	1023900			40309	1284	27060	27165	40817	40817					0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.84033203125	2	616.840268	1231.66598	-0.4555	-0.00028097	0.51818	0.00031963	0.062682	3.8665E-05	616.8405898005856	36.819	0.477	36.819	36.702	37.179	0					42	13	5	0	0	0	4.7854E-05	1	13891	13891		162.64	61.035	1	7668200			40310	1284	27060	27165	40818	40818					0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.8403930664062	2	616.840268	1231.66598	0.28202	0.00017396	-0.11246	-6.937E-05	0.16956	0.00010459	616.8401661723052	36.795	0.3922	36.795	36.695	37.087	0					32	12	4	0	0	0	4.7854E-05	1	14333	14333		162.64	82.923	1	2268200			40311	1284	27060	27165	40819	40819					0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.5626525878906	3	411.562604	1231.66598	-0.45486	-0.0001872	0.15093	6.2118E-05	-0.30393	-0.00012509	411.5627254670443	36.735	0.16472	36.735	36.681	36.846	0					7	3	3	0	0	0	0.53842	1	14313	14313		58.63	26.995	1	312540			40312	1284	27060	27165	40820	40820					0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.56231689453125	3	411.562604	1231.66598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.748	1	36.748	36.248	37.248	0								0	0	0	0.32997	1	14309	14309		65.278	28.75	1				40313	1284	27060	27165	40821	40821					0.05941614295238651
SVEEKLSLAQ	10	Unmodified	_SVEEKLSLAQ_					0	0	0		ENSG00000102189|ENST00000322349|EEA1;EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.53668212890625	3	368.536278	1102.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.455	1	18.455	17.955	18.955	0								0	0	0	0.41253	1	4819	4819		38.754	15.231	1				40314	881	27061	27166	40822	40822					0.03981387060935049
SVEELLWP	8	Unmodified	_SVEELLWP_					0	0	0			REV__nc|ENSG00000173258|Q8TF39-2|ZNF483	REV__nc|ENSG00000173258|Q8TF39-2|ZNF483	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7586669921875	2	486.755475	971.496398	0.70464	0.00034299	4.1509	0.0020205	4.8555	0.0023634	486.75752510514224	24.672	0.51827	24.672	24.356	24.874	0					21	12	3	0	0	0	0.64096	1	8359	8359		42.474	1.0478	1	421450	+		40315	16501	27062	27167	40823	40823					0.009509628033470108
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	630.3513793945312	2	630.351334	1258.68811	1.1982	0.00075527	-1.1655	-0.00073465	0.032716	2.0622E-05	630.3506772493982	27.246	0.22104	27.246	27.157	27.378	0					10	5	3	0	0	0	0.20372	1	9502	9502		73.841	15.611	1	458970			40316	2680;6204	27063	27168	40824	40824					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	630.3514404296875	2	630.351334	1258.68811	-0.12773	-8.0512E-05	0.30247	0.00019066	0.17474	0.00011015	630.3515638132048	27.246	0.16906	27.246	27.186	27.355	0					8	3	3	0	0	0	0.17294	1	9862	9862		77.533	17.415	1	258310			40317	2680;6204	27063	27168	40825	40825					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.5697937011719	3	420.569981	1258.68811	-0.31524	-0.00013258	-0.28295	-0.000119	-0.59819	-0.00025158	420.5699210234177	27.213	0.16868	27.213	27.103	27.272	0					8	3	3	0	0	0	0.70609	1	9705	9705		50.791	25.665	1	333780			40318	2680;6204	27063	27168	40826	40826					0.06911838763653577
SVEGPSQAK	9	Unmodified	_SVEGPSQAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7327575683594	2	451.732532	901.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.622	1	15.622	15.122	16.122	0								0	0	0	0.15687	1	4309	4309		58.23	5.2932	1				40319	7403	27064	27169	40827	40827					-0.004156823789003283
SVEGPSQAK	9	Unmodified	_SVEGPSQAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.732421875	2	451.732532	901.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.37	1	15.37	14.87	15.87	0								0	0	0	0.25587	1	3433	3433		42.864	3.6114	1				40320	7403	27064	27169	40828	40828					-0.004156823789003283
SVEGPSQAK	9	Unmodified	_SVEGPSQAK_					0	0	0		FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7320861816406	2	451.732532	901.45051	0.87658	0.00039598	-1.2958	-0.00058535	-0.41921	-0.00018937	451.7319087066112	15.573	0.60251	15.573	15.246	15.849	0					22	12	3	0	0	0	0.3269	1	4131	4131		47.96	5.0953	1	441530			40321	7403	27064	27169	40829	40829					-0.004156823789003283
SVEITGVSH	9	Unmodified	_SVEITGVSH_					0	0	0		AluSp_dup17164|chr6:42889159-42889460:+|1.1128196386926228|0.1877517114460719|2.57|474.0|13|1|anti-sense	AluSp_dup17164|chr6:42889159-42889460:+|1.1128196386926228|0.1877517114460719|2.57|474.0|13|1|anti-sense	AluSp_dup17164|chr6:42889159-42889460:+|1.1128196386926228|0.1877517114460719|2.57|474.0|13|1|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7416687011719	2	464.740357	927.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.316	1	21.316	20.816	21.816	0								0	0	0	0.28996	1	6159	6159		37.159	0	1				40322	129	27065	27170	40830	40830					-0.00047395861849963694
SVEKLAAKL	9	Unmodified	_SVEKLAAKL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.79986572265625	2	479.800217	957.585882	-0.21461	-0.00010297	-0.68516	-0.00032874	-0.89977	-0.00043171	479.799821973143	32.142	0.21435	32.142	32.048	32.262	0					7	5	2	0	0	0	0.21263	1	11779	11779		60.118	5.3419	1	144340			40323	8044;11109	27066	27171	40831	40831					0.1053921748269886
SVEKSRLQ	8	Unmodified	_SVEKSRLQ_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.76922607421875	2	473.769448	945.524344	-0.50792	-0.00024064	-0.52166	-0.00024715	-1.0296	-0.00048779	473.76910458910464	17.419	0.60321	17.419	17.213	17.816	0					37	15	4	0	0	0	0.36488	1	4904	4904		75.043	5.4157	1	6564000	+		40324	14944	27067	27172	40832	40832					0.049402857834252245
SVELGKQKK	9	Unmodified	_SVELGKQKK_					0	0	0		nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	nc|ENSG00000149485|O60427-2|FADS1	nc|ENSG00000149485|O60427-2|FADS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.8082580566406	2	508.808574	1015.60259	-0.10263	-5.2219E-05	-0.42146	-0.00021444	-0.52409	-0.00026666	508.80826106953725	14.199	0.095759	14.199	14.134	14.229	0					10	4	3	0	0	0	0.087861	1	2885	2885		82.241	4.9229	1	203330			40325	4887	27068	27173	40833	40833					0.09541718368666352
SVELIKLIK	9	Unmodified	_SVELIKLIK_					0	0	0			REV__ENST00000483493.6_1_9:26884817-26892259:-|nuORF	REV__ENST00000483493.6_1_9:26884817-26892259:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.8466796875	2	521.847167	1041.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.16	1	43.16	42.66	43.66	0								0	0	0	0.36609	1	17266	17266		20.947	0	1		+		40326	19624	27069	27174	40834	40834					0.16060936584972296
SVELPIVGK	9	Unmodified	_SVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.28692626953125	2	471.286943	940.559333	-0.010588	-4.9901E-06	0.01425	6.7157E-06	0.0036615	1.7256E-06	471.2871187573985	38.419	0.5598	38.419	38.13	38.69	0					74	32	3	0	0	0	0.087861	2	12565	12466;12565		82.241	39.844	1	230960			40327	7935	27070	27175	40835;40836	40836					0.08667528591388418
SVELPIVGK	9	Unmodified	_SVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.28753662109375	2	471.286943	940.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.09	1	38.09	37.59	38.59	0								0	0	0	0.22284	1	12854	12854		47.657	17.154	1				40328	7935	27070	27175	40837	40837					0.08667528591388418
SVELPIVGK	9	Unmodified	_SVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2867126464844	2	471.286943	940.559333	-0.12414	-5.8505E-05	-0.32861	-0.00015487	-0.45275	-0.00021338	471.28677085048673	38.687	1.0639	38.687	38.174	39.237	0					106	37	4	0	0	0	0.048471	2	15285	15136;15285		95.815	37.033	1	1671900			40329	7935	27070	27175	40838;40839	40839					0.08667528591388418
SVELPIVGK	9	Unmodified	_SVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2872009277344	2	471.286943	940.559333	-0.19009	-8.9585E-05	0.53564	0.00025244	0.34555	0.00016285	471.2872007459731	38.556	0.66353	38.556	38.107	38.77	0					79	33	3	0	0	0	0.13267	2	13775	13650;13775		71.877	13.096	1	407220			40330	7935	27070	27175	40840;40841	40841					0.08667528591388418
SVELPIVGK	9	Unmodified	_SVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2867126464844	2	471.286943	940.559333	-0.55367	-0.00026094	-0.088194	-4.1565E-05	-0.64186	-0.0003025	471.28692922390235	38.704	1.2374	38.704	37.904	39.141	0					82	26	5	0	0	0	0.13267	3	15294	14956;15131;15294		71.877	20.542	1	3509900			40331	7935	27070	27175	40842;40843;40844	40844					0.08667528591388418
SVELVDIGK	9	Unmodified	_SVELVDIGK_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000582620.5_1_18:72167208-72179735:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2733154296875	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.287	1	36.287	35.787	36.787	0								0	0	0	0.20989	1	14121	14121		49.536	13.089	1				40332	3848	27071	27176	40845	40845					0.05258634349092972
SVERSIIK	8	Unmodified	_SVERSIIK_					0	0	0			REV__ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	REV__ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.28228759765625	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.507	1	17.507	17.007	18.007	0								0	0	0	1.7419	1	4187	4187		42.396	1.618	1		+		40333	12246	27072	27177	40846	40846					0.08177760305864012
SVETPQDVLR	10	Unmodified	_SVETPQDVLR_					0	0	0		ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.3036499023438	2	572.303852	1142.59315	-1.4292	-0.00081795	1.6331	0.00093462	0.20387	0.00011667	572.3048970811815	33.087	0.33957	33.087	32.878	33.218	0					15	10	2	0	0	0	0.65895	1	11557	11557		27.047	0	1	57602			40334	4529	27073	27178	40847	40847					0.02755905292474381
SVETPQDVLR	10	Unmodified	_SVETPQDVLR_					0	0	0		ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.3045654296875	2	572.303852	1142.59315	1.649	0.00094371	-0.9084	-0.00051988	0.74056	0.00042383	572.3034061125197	33.206	0.35213	33.206	33.046	33.399	0					19	7	4	0	0	0	0.36647	1	12584	12584		59.931	10.395	1	465790			40335	4529	27073	27178	40848	40848					0.02755905292474381
SVEVASSLK	9	Unmodified	_SVEVASSLK_					0	0	0			REV__nc|ENSG00000170579|O14490-6|DLGAP1	REV__nc|ENSG00000170579|O14490-6|DLGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2586364746094	2	460.258382	918.502212	0.085983	3.9574E-05	-0.18485	-8.5078E-05	-0.098866	-4.5504E-05	460.2584362417958	30.775	0.3614	30.775	30.592	30.954	0					28	15	3	0	0	0	0.36892	1	9820	9820		44.377	1.5129	1	542190	+		40336	21117	27074	27179	40849	40849					0.039700613149989294
SVFAAKGGRS	10	Unmodified	_SVFAAKGGRS_					0	0	0			REV__ENST00000479413.1_1_9:74526474-74526639:+|nuORF	REV__ENST00000479413.1_1_9:74526474-74526639:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2677001953125	2	490.269616	978.524678	-2.7849	-0.0013654	-1.7725	-0.00086901	-4.5575	-0.0022344	490.2690151168881	39.25	0.24345	39.25	39.156	39.4	0					27	13	3	0	0	0	0.63224	1	13990	13990		30.318	1.1682	1	188910	+		40337	19573	27075	27180	40850	40850					0.03455705503290574
SVFAARMQ	8	Unmodified	_SVFAARMQ_					0	0	0			REV__ENST00000505306.5_1_17:48133647-48154208:+|nuORF	REV__ENST00000505306.5_1_17:48133647-48154208:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2340087890625	2	455.234187	908.453822	0.72629	0.00033063	-1.5481	-0.00070476	-0.82183	-0.00037413	455.23346130686554	34.566	0.29033	34.566	34.454	34.744	0					11	7	2	0	0	0	0.64096	1	12889	12889		42.474	5.3154	1	102360	+		40338	12842	27076	27181	40851	40851					-0.0040671080588481345
SVFAEARLL	9	Unmodified	_SVFAEARLL_					0	0	0			REV__EME1|p.K470Rfs*11|1|0.39|ENSG00000154920|chr17:50380373-50380373|A/-|frameshift_variant	REV__EME1|p.K470Rfs*11|1|0.39|ENSG00000154920|chr17:50380373-50380373|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.28802490234375	2	503.290017	1004.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.278	1	38.278	37.778	38.778	0								0	0	0	0.30504	1	12914	12914		34.173	0	1		+		40339	12794	27077	27182	40852	40852					0.06338046822895649
SVFAFGENK	9	Unmodified	_SVFAFGENK_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENST00000526625.2_1_11:62139723-62139795:+|nuORF;ENST00000405832.2_1_6:56297536-56297638:-|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7503662109375	2	499.750724	997.486896	-2.1582	-0.0010786	1.6304	0.00081481	-0.5278	-0.00026377	499.75139300692587	36.155	0.24288	36.155	36.031	36.273	0					14	8	2	0	0	0	0.11898	1	12910	12910		75.043	3.7476	1	124990			40340	6751	27078	27183	40853	40853					-0.011948054821800724
SVFDSSSDMEK	11	Unmodified	_SVFDSSSDMEK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	616.2589111328125	2	616.260993	1230.50743	0.16947	0.00010444	-0.38727	-0.00023866	-0.21779	-0.00013422	616.2606685653882	30.824	0.16155	30.824	30.738	30.899	0					12	6	3	0	0	0	0.54316	1	9844	9844		41.08	0.3019	1	130100			40341	2732	27079	27184	40854	40854					-0.0986004767535178
SVFDSSSDMEK	11	Unmodified	_SVFDSSSDMEK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.26123046875	2	616.260993	1230.50743	-0.55494	-0.00034199	0.742	0.00045726	0.18706	0.00011528	616.2615869206196	31.041	0.2673	31.041	30.944	31.211	0					14	6	3	0	0	0	0.21827	1	11262	11262		72.096	19.007	1	696480			40342	2732	27079	27184	40855	40855					-0.0986004767535178
SVFDSSSDMEK	11	Unmodified	_SVFDSSSDMEK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.2608032226562	2	616.260993	1230.50743	0.29992	0.00018483	-0.7495	-0.00046189	-0.44958	-0.00027706	616.2607686515535	31.069	0.3305	31.069	30.965	31.296	0					15	7	3	0	0	0	0.050009	1	11690	11690		105.17	43.058	1	635580			40343	2732	27079	27184	40856	40856					-0.0986004767535178
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.7982788085938	2	560.797872	1119.58119	1.7925	0.0010053	-1.1658	-0.0006538	0.62669	0.00035145	560.7971323721646	38.412	0.41708	38.412	38.236	38.653	0					44	15	4	0	0	0	0.41384	1	14548	14548		54.722	24.405	1	704100			40344	3413	27080	27185	40857	40857					0.02618288549274439
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.798583984375	2	560.797872	1119.58119	0.65889	0.0003695	0.94834	0.00053183	1.6072	0.00090133	560.7984101857741	38.386	0.46564	38.386	38.201	38.667	0					43	16	4	0	0	0	0.28855	1	15024	15024		68.626	24.249	1	443420			40345	3413	27080	27185	40858	40858					0.02618288549274439
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7992553710938	2	560.797872	1119.58119	1.5554	0.00087227	0.38161	0.000214	1.937	0.0010863	560.7981050650212	38.184	0.26105	38.184	38.053	38.314	0					23	13	2	0	0	0	0.36647	1	13639	13639		59.931	10.395	1	145860			40346	3413	27080	27185	40859	40859					0.02618288549274439
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7984619140625	2	560.797872	1119.58119	1.0244	0.00057448	0.78752	0.00044164	1.8119	0.0010161	560.7981802904603	38.179	0.23745	38.179	38.047	38.284	0					17	12	2	0	0	0	0.3337	1	13657	13657		63.534	20.67	1	58394			40347	3413	27080	27185	40860	40860					0.02618288549274439
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.79931640625	2	560.797872	1119.58119	1.2753	0.00071519	-0.27492	-0.00015417	1.0004	0.00056101	560.7976313148789	38.365	0.52287	38.365	38.088	38.61	0					33	11	4	0	0	0	0.39647	2	14999	14999;15181		56.632	20.185	1	886400			40348	3413	27080	27185	40861;40862	40861					0.02618288549274439
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant;ENSG00000125445|ENST00000245539|MRPS7	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MRPS7|p.L162Pfs*29|1|0.05|ENSG00000125445|chr17:75263482-75263483|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7979736328125	2	560.797872	1119.58119	1.8105	0.0010153	-0.99732	-0.00055929	0.81323	0.00045606	560.7972228214212	38.362	0.58386	38.362	38.111	38.695	0					29	12	3	0	0	0	0.1998	1	15042	15042		79.489	33.517	1	648230			40349	3413	27080	27185	40863	40863					0.02618288549274439
SVFEFLSNK	9	Unmodified	_SVFEFLSNK_					0	0	0			REV__nc|ENSG00000125046|Q9Y2M2-3|SSUH2	REV__nc|ENSG00000125046|Q9Y2M2-3|SSUH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.5220947265625	3	357.52208	1069.54441	0.48632	0.00017387	-0.46413	-0.00016594	0.022183	7.9309E-06	357.5219903184927	23.304	0.31697	23.304	23.21	23.526	0					16	7	3	0	0	0	0.47038	1	7707	7707		35.152	0	1	971070	+		40350	14420	27081	27186	40864	40864					0.0124203672337444
SVFERASI	8	Unmodified	_SVFERASI_					0	0	0			REV__KLHL41|p.Y231Ifs*3|1|0.42|ENSG00000239474|chr2:169510463-169510464|-/A|frameshift_variant	REV__KLHL41|p.Y231Ifs*3|1|0.42|ENSG00000239474|chr2:169510463-169510464|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.74493408203125	2	454.745442	907.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.006	1	32.006	31.506	32.506	0								0	0	0	1.7419	1	10653	10653		34.173	1.3601	1		+		40351	17673	27082	27187	40865	40865					0.01889211863363016
SVFGKENKK	9	Unmodified	_SVFGKENKK_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7927856445312	2	518.792924	1035.57129	0.055635	2.8863E-05	-0.22884	-0.00011872	-0.1732	-8.9856E-05	518.7927802057029	15.367	0.13664	15.367	15.314	15.45	0					7	3	3	0	0	0	0.037924	1	3959	3959		101.25	19.012	1	659670			40352	1125	27083	27188	40866	40866					0.05493145334571636
SVFGLKVSK	9	Unmodified	_SVFGLKVSK_					0	0	0		nc|ENSG00000188266|A2RU49-2|HYKK;nc|ENSG00000188266|A2RU49-3|HYKK;ENSG00000188266|ENST00000388988|HYKK	nc|ENSG00000188266|A2RU49-2|HYKK	nc|ENSG00000188266|A2RU49-2|HYKK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.794921875	2	482.794935	963.575317	0.5818	0.00028089	-1.2574	-0.00060706	-0.67559	-0.00032617	482.79418604753033	30.571	0.18844	30.571	30.487	30.675	0					9	4	3	0	0	0	0.19605	1	11047	11047		62.107	14.45	1	188940			40353	7244	27084	27189	40867	40867					0.09207234828272703
SVFGTMPLK	9	Unmodified	_SVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.76959228515625	2	490.267696	978.520839	-0.12484	-6.1207E-05	0.25525	0.00012514	0.13041	6.3936E-05	490.2678144179591	39.184	0.20965	39.184	39.117	39.327	0					26	12	3	0	0	0	0.50858	1	12733	12733		31.53	1.6883	1	221750			40354	4957	27085	27190	40868	40868					0.030718996852101554
SVFGTMPLK	9	Unmodified	_SVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2676696777344	2	490.267696	978.520839	0.81175	0.00039798	-1.2552	-0.00061538	-0.44344	-0.0002174	490.26725444841725	39.507	0.38147	39.507	39.371	39.753	0					41	15	4	0	0	0	0.27249	1	15023	15023		52.937	8.8199	1	1200000			40355	4957	27085	27190	40869	40869					0.030718996852101554
SVFGTMPLK	9	Unmodified	_SVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7689208984375	2	490.267696	978.520839	-1.2564	-0.000616	0.9261	0.00045404	-0.33035	-0.00016196	490.26825401180355	39.257	0.30722	39.257	39.152	39.459	0					34	17	3	0	0	0	0.42902	1	13189	13189		39.253	39.253	1	392790			40356	4957	27085	27190	40870	40870					0.030718996852101554
SVFGTMPLK	9	Unmodified	_SVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2673645019531	2	490.267696	978.520839	-0.11512	-5.6442E-05	-0.075501	-3.7016E-05	-0.19063	-9.3458E-05	490.26787284218136	39.259	0.26209	39.259	39.163	39.425	0					32	14	3	0	0	0	0.17854	1	13994	13994		64.207	12.872	1	238090			40357	4957	27085	27190	40871	40871					0.030718996852101554
SVFGTMPLK	9	Unmodified	_SVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.26800537109375	2	490.267696	978.520839	-0.5384	-0.00026396	0.28597	0.0001402	-0.25244	-0.00012376	490.26820441195594	39.413	0.1956	39.413	39.348	39.543	0					5	4	2	0	0	0	0.42902	1	15578	15578		39.253	2.0937	1	89201			40358	4957	27085	27190	40872	40872					0.030718996852101554
SVFGTMPLK	9	Unmodified	_SVFGTMPLK_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2672119140625	2	490.267696	978.520839	0.77404	0.00037949	-1.791	-0.00087809	-1.017	-0.0004986	490.2670491005116	39.43	0.63886	39.43	39.287	39.926	0					39	14	5	0	0	0	0.07136	1	15551	15551		87.696	15.819	1	4343300			40359	4957	27085	27190	40873	40873					0.030718996852101554
SVFGTMPLK	9	Oxidation (M)	_SVFGTM(Oxidation (M))PLK_		SVFGTM(1)PLK		SVFGTM(70)PLK	0	0	1		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2647705078125	2	498.265153	994.515753	-0.25549	-0.0001273	-0.00056393	-2.8099E-07	-0.25605	-0.00012758	498.2649938435341	32.722	0.21482	32.722	32.611	32.826	0					13	5	3	0	0	0	0.1424	1	12038	12038		69.628	20.186	1	517410			40360	4957	27085	27191	40874	40874		203			0.018275958226013245
SVFGTMPLK	9	Oxidation (M)	_SVFGTM(Oxidation (M))PLK_		SVFGTM(1)PLK		SVFGTM(53)PLK	0	0	1		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2646484375	2	498.265153	994.515753	-2.2338	-0.001113	1.6332	0.00081377	-0.60054	-0.00029923	498.2659700121684	32.482	0.16061	32.482	32.378	32.539	0					9	5	2	0	0	0	0.27249	1	11300	11300		52.937	15.778	1	88060			40361	4957	27085	27191	40875	40875		203			0.018275958226013245
SVFHASLAK	9	Unmodified	_SVFHASLAK_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2685546875	2	480.269084	958.523616	0.031673	1.5212E-05	-0.58519	-0.00028105	-0.55351	-0.00026583	480.2687272792133	24.346	0.13166	24.346	24.275	24.407	0					8	4	2	0	0	0	0.026538	1	7168	7168		112.41	43.565	1	204380			40362	1351	27086	27192	40876	40876					0.04269491134380132
SVFHASLAK	9	Unmodified	_SVFHASLAK_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2690734863281	2	480.269084	958.523616	0.50046	0.00024036	-0.726	-0.00034867	-0.22553	-0.00010832	480.26877804716565	24.661	0.26532	24.661	24.533	24.798	0					14	6	3	0	0	0	0.0071053	1	8321	8321		148.99	54.98	1	1419400			40363	1351	27086	27192	40877	40877					0.04269491134380132
SVFHASLAK	9	Unmodified	_SVFHASLAK_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2687072753906	2	480.269084	958.523616	-0.11068	-5.3158E-05	-0.61686	-0.00029626	-0.72754	-0.00034942	480.26867909900056	24.619	0.26676	24.619	24.511	24.778	0					12	5	4	0	0	0	0.013878	1	8623	8623		132.76	71.786	1	1109400			40364	1351	27086	27192	40878	40878					0.04269491134380132
SVFHASLAK	9	Unmodified	_SVFHASLAK_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.26885986328125	2	480.269084	958.523616	0.049696	2.3868E-05	-0.23027	-0.00011059	-0.18058	-8.6725E-05	480.2690889864545	24.448	0.13938	24.448	24.355	24.495	0					6	3	2	0	0	0	0.021961	1	7613	7613		118.74	52.94	1	162720			40365	1351	27086	27192	40879	40879					0.04269491134380132
SVFHASLAK	9	Unmodified	_SVFHASLAK_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.268798828125	2	480.269084	958.523616	-0.64454	-0.00030955	0.56289	0.00027034	-0.081644	-3.9211E-05	480.2691565661496	24.581	0.50337	24.581	24.38	24.884	0					25	10	4	0	0	0	0.011389	1	8491	8491		138.06	60.745	1	1325400			40366	1351	27086	27192	40880	40880					0.04269491134380132
SVFHTDDP	8	Unmodified	_SVFHTDDP_					0	0	0			REV__ENSG00000140395|ENST00000267973|SKIC8	REV__ENSG00000140395|ENST00000267973|SKIC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.20416259765625	2	459.203607	916.392661	0.75687	0.00034756	-0.30146	-0.00013843	0.4554	0.00020912	459.20379884884574	49.314	0.253	49.314	49.181	49.434	0					38	14	4	0	0	0	0.76283	1	15408	15408		25.45	3.4903	1	516090	+		40367	15074	27087	27193	40881	40881					-0.06887944304332905
SVFIEMTIV	9	Oxidation (M)	_SVFIEM(Oxidation (M))TIV_		SVFIEM(1)TIV		SVFIEM(66)TIV	0	0	1			REV__ENST00000396408.7_1_19:53911016-53911145:+|nuORF	REV__ENST00000396408.7_1_19:53911016-53911145:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7794799804688	2	527.778093	1053.54163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.348	1	24.348	23.848	24.848	0								0	0	0	0.12457	1	7174	7174		65.803	7.9919	1		+		40368	18898	27088	27194	40882	40882		695			0.01700445274195772
SVFKPRTMQG	10	Oxidation (M)	_SVFKPRTM(Oxidation (M))QG_		SVFKPRTM(1)QG		SVFKPRTM(40)QG	0	0	1		ENSG00000082068|ENST00000265107|WDR70;WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;ENST00000511906.5_1_5:37379391-37721408:+|nuORF	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	389.87200927734375	3	389.537736	1165.59138	0.55965	0.000218	-1.0349	-0.00040314	-0.47528	-0.00018514	389.537442771537	21.101	0.29778	21.101	21.028	21.326	0					14	8	4	0	0	0	0.54861	1	5754	5754		40.058	6.1365	1	1095400			40369	1669	27089	27195	40883	40883		79			0.015205730028355902
SVFKPRTMQG	10	Oxidation (M)	_SVFKPRTM(Oxidation (M))QG_		SVFKPRTM(1)QG		SVFKPRTM(53)QG	0	0	1		ENSG00000082068|ENST00000265107|WDR70;WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;ENST00000511906.5_1_5:37379391-37721408:+|nuORF	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.5376281738281	3	389.537736	1165.59138	0.23568	9.1806E-05	-0.6896	-0.00026862	-0.45391	-0.00017682	389.53749751821266	21.223	0.1608	21.223	21.168	21.329	0					6	3	2	0	0	0	0.4287	1	6123	6123		53.089	6.6322	1	757180			40370	1669	27089	27195	40884	40884		79			0.015205730028355902
SVFKSARQK	9	Unmodified	_SVFKSARQK_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.8063354492188	2	525.806365	1049.59818	0.6482	0.00034083	-0.24969	-0.00013129	0.39851	0.00020954	525.8061206920213	15.332	0.086077	15.332	15.267	15.354	0					5	3	2	0	0	0	0.30841	1	3313	3313		49.536	29.539	1	91453			40371	1639	27090	27196	40885	40885					0.07536253945750104
SVFKSARQK	9	Unmodified	_SVFKSARQK_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.8064575195312	2	525.806365	1049.59818	0.098255	5.1663E-05	0.33692	0.00017716	0.43518	0.00022882	525.8064297950675	15.609	0.13709	15.609	15.56	15.697	0					7	3	3	0	0	0	0.047855	1	4075	4075		96.034	43.097	1	873220			40372	1639	27090	27196	40886	40886					0.07536253945750104
SVFKSARQK	9	Unmodified	_SVFKSARQK_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.8060913085938	2	525.806365	1049.59818	0.515	0.00027079	0.12679	6.6668E-05	0.64179	0.00033746	525.8064104154611	15.376	0.14723	15.376	15.312	15.459	0					10	5	3	0	0	0	0.30841	1	3487	3487		49.536	13.918	1	374570			40373	1639	27090	27196	40887	40887					0.07536253945750104
SVFLFILII	9	Unmodified	_SVFLFILII_					0	0	0			REV__tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	REV__tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8399047851562	2	532.841354	1063.66815	-1.2859	-0.00068517	-1.2264	-0.00065348	-2.5123	-0.0013387	532.840679982241	34.225	0.29099	34.225	34.12	34.411	0					21	9	3	0	0	0	0.55379	1	12086	12086		12.959	12.959	1	374010	+		40374	21683	27091	27197	40888	40888					0.13886739561667127
SVFLFLNIA	9	Unmodified	_SVFLFLNIA_					0	0	0		ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.297607421875	2	512.29731	1022.58007	1.2492	0.00063997	-1.7503	-0.00089666	-0.50104	-0.00025668	512.2967132436934	44.435	0.20633	44.435	44.365	44.572	0					15	11	2	0	0	0	0.53064	1	17311	17311		21.96	0	1	64913			40375	7777	27092	27198	40889	40889					0.06968118971019521
SVFLFLNIA	9	Unmodified	_SVFLFLNIA_					0	0	0		ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2970581054688	2	512.29731	1022.58007	1.424	0.00072949	-0.73362	-0.00037583	0.69034	0.00035366	512.2966998625373	44.403	0.24901	44.403	44.289	44.538	0					20	10	3	0	0	0	0.22837	1	17774	17774		60.972	20.399	1	179420			40376	7777	27092	27198	40890	40890					0.06968118971019521
SVFLGTHSK	9	Unmodified	_SVFLGTHSK_					0	0	0		nc|ENSG00000119685|Q6EMB2-2|TTLL5;ENSG00000119685|ENST00000298832|TTLL5	nc|ENSG00000119685|Q6EMB2-2|TTLL5	nc|ENSG00000119685|Q6EMB2-2|TTLL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.26605224609375	2	488.266542	974.51853	-0.016326	-7.9716E-06	-0.6211	-0.00030326	-0.63743	-0.00031124	488.2662579108579	21.701	0.19659	21.701	21.605	21.801	0					9	6	2	0	0	0	0.10915	1	6017	6017		77.318	18.536	1	145110			40377	3129	27093	27199	40891	40891					0.030251872717713013
SVFLGTHSK	9	Unmodified	_SVFLGTHSK_					0	0	0		nc|ENSG00000119685|Q6EMB2-2|TTLL5;ENSG00000119685|ENST00000298832|TTLL5	nc|ENSG00000119685|Q6EMB2-2|TTLL5	nc|ENSG00000119685|Q6EMB2-2|TTLL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2661437988281	2	488.266542	974.51853	-0.38498	-0.00018797	-0.098692	-4.8188E-05	-0.48367	-0.00023616	488.2664961308783	22.069	0.26058	22.069	21.948	22.209	0					14	6	4	0	0	0	0.063171	1	7101	7101		90.601	28.493	1	831930			40378	3129	27093	27199	40892	40892					0.030251872717713013
SVFLGTHSK	9	Unmodified	_SVFLGTHSK_					0	0	0		nc|ENSG00000119685|Q6EMB2-2|TTLL5;ENSG00000119685|ENST00000298832|TTLL5	nc|ENSG00000119685|Q6EMB2-2|TTLL5	nc|ENSG00000119685|Q6EMB2-2|TTLL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2663879394531	2	488.266542	974.51853	-0.70824	-0.00034581	0.029163	1.424E-05	-0.67908	-0.00033157	488.2666527124092	21.947	0.21236	21.947	21.842	22.054	0					9	4	3	0	0	0	0.047855	1	7347	7347		96.034	31.826	1	739660			40379	3129	27093	27199	40893	40893					0.030251872717713013
SVFLVMEY	8	Unmodified	_SVFLVMEY_					0	0	0		ULK2|p.F266Lfs*11|1|0.36|ENSG00000083290|chr17:19826176-19826176|A/-|frameshift_variant;ULK2|p.A514Sfs*12|1|0.06|ENSG00000083290|chr17:19797665-19797666|-/T|frameshift_variant;ENSG00000083290|ENST00000395544|ULK2	ULK2|p.F266Lfs*11|1|0.36|ENSG00000083290|chr17:19826176-19826176|A/-|frameshift_variant	ULK2|p.F266Lfs*11|1|0.36|ENSG00000083290|chr17:19826176-19826176|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.24774169921875	2	494.246429	986.478305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.241	1	29.241	28.741	29.741	0								0	0	0	1.7419	1	10689	10689		52.299	6.3472	1				40380	1692	27094	27200	40894	40894					-0.015474954430260368
SVFMSQNLK	9	Unmodified	_SVFMSQNLK_					0	0	0		ENST00000586255.5_1_19:9448675-9449241:+|nuORF	ENST00000586255.5_1_19:9448675-9449241:+|nuORF	ENST00000586255.5_1_19:9448675-9449241:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2733154296875	2	527.273509	1052.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.556	1	32.556	32.056	33.056	0								0	0	0	0.1347	1	11962	11962		65.465	14.13	1				40381	10902	27095	27201	40895	40895					0.008300967085460798
SVFMSQNLK	9	Unmodified	_SVFMSQNLK_					0	0	0		ENST00000586255.5_1_19:9448675-9449241:+|nuORF	ENST00000586255.5_1_19:9448675-9449241:+|nuORF	ENST00000586255.5_1_19:9448675-9449241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2732543945312	2	527.273509	1052.53247	1.7557	0.00092575	-0.43821	-0.00023106	1.3175	0.00069469	527.2723180678013	32.52	0.37655	32.52	32.274	32.65	0					28	9	5	0	0	0	0.10821	1	12365	12365		70.816	0	1	420340			40382	10902	27095	27201	40896	40896					0.008300967085460798
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.789306640625	2	540.788507	1079.56246	0.28111	0.00015202	1.0009	0.00054126	1.282	0.00069328	540.7891267593452	21.212	0.18826	21.212	21.123	21.311	0					10	4	3	0	0	0	0.076532	1	6717	6717		85.862	28.051	1	620180			40383	8095	27096	27202	40897	40897					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7884521484375	2	540.788507	1079.56246	0.0385	2.082E-05	1.0819	0.00058509	1.1204	0.00060591	540.7892421560291	20.932	0.22991	20.932	20.841	21.071	0					13	7	3	0	0	0	0.095583	1	5916	5916		80.455	32.539	1	320820			40384	8095	27096	27202	40898	40898					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7888793945312	2	540.788507	1079.56246	1.9936	0.0010781	-1.2096	-0.00065412	0.78403	0.000424	540.7880027708852	21.121	0.21361	21.121	21.011	21.225	0					11	4	3	0	0	0	0.037924	1	6965	6965		101.25	40.959	1	1586200			40385	8095	27096	27202	40899	40899					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.86138916015625	3	360.86143	1079.56246	1.4331	0.00051714	-1.0295	-0.0003715	0.40359	0.00014564	360.8610131955864	21.121	0.81436	21.121	21.011	21.825	0					20	16	2	0	0	0	0.30951	1	6967	6967		75.043	46.467	1	910810			40386	8095	27096	27202	40900	40900					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7888793945312	2	540.788507	1079.56246	1.0379	0.00056128	-0.039116	-2.1153E-05	0.99877	0.00054012	540.7885224353882	20.984	0.17582	20.984	20.944	21.12	0					8	4	2	0	0	0	0.28897	1	6033	6033		51.193	19.238	1	228840			40387	8095	27096	27202	40901	40901					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7886962890625	2	540.788507	1079.56246	2.0832	0.0011266	-1.1681	-0.00063167	0.91515	0.0004949	540.787795187724	21.121	0.46266	21.121	21.025	21.488	0					15	9	2	0	0	0	0.095583	1	6843	6843		80.455	32.539	1	1231700			40388	8095	27096	27202	40902	40902					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;KBTBD2-CYFIP1|1|fusion	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.78857421875	2	540.788507	1079.56246	3.5017	0.0018937	-3.0357	-0.0016417	0.46598	0.000252	540.7869275774427	21.117	0.21337	21.117	21.008	21.222	0					14	4	4	0	0	0	0.02953	1	6832	6832		109.48	54.702	1	2552400			40389	8095	27096	27202	40903	40903					0.02586216488748505
SVFNKTLLK	9	Unmodified	_SVFNKTLLK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.3214721679688	2	525.321317	1048.62808	1.9113	0.001004	-3.5717	-0.0018763	-1.6604	-0.00087225	525.318932833471	30.37	0.29591	30.37	30.284	30.579	0					16	7	4	0	0	0	0.078509	1	10952	10952		85.161	25.043	1	751990			40390	3220	27097	27203	40904	40904					0.10571192891075043
SVFNKTLLK	9	Unmodified	_SVFNKTLLK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.32080078125	2	525.321317	1048.62808	1.7743	0.0009321	-2.5048	-0.0013158	-0.73042	-0.00038371	525.3198681364639	30.358	0.15323	30.358	30.263	30.416	0					10	3	4	0	0	0	0.38666	1	11353	11353		42.864	3.6114	1	473310			40391	3220	27097	27203	40905	40905					0.10571192891075043
SVFNKTLLK	9	Unmodified	_SVFNKTLLK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.320556640625	2	525.321317	1048.62808	1.6271	0.00085473	-2.6394	-0.0013865	-1.0123	-0.00053177	525.3196812995158	30.286	0.21164	30.286	30.23	30.441	0					11	4	4	0	0	0	0.061298	1	11205	11205		91.265	29.158	1	923720			40392	3220	27097	27203	40906	40906					0.10571192891075043
SVFQETLLH	9	Unmodified	_SVFQETLLH_					0	0	0		ENST00000602661.5_1_9:108363519-108366511:+|nuORF	ENST00000602661.5_1_9:108363519-108366511:+|nuORF	ENST00000602661.5_1_9:108363519-108366511:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2862548828125	2	537.284931	1072.55531	2.1055	0.0011312	-0.90702	-0.00048733	1.1984	0.00064391	537.2846243948776	42.028	0.1856	42.028	41.925	42.111	0					14	9	2	0	0	0	0.25716	1	15942	15942		54.776	23.247	1	50288			40393	11049	27098	27204	40907	40907					0.021934390976639406
SVFQETLLH	9	Unmodified	_SVFQETLLH_					0	0	0		ENST00000602661.5_1_9:108363519-108366511:+|nuORF	ENST00000602661.5_1_9:108363519-108366511:+|nuORF	ENST00000602661.5_1_9:108363519-108366511:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7870483398438	2	537.284931	1072.55531	0.69814	0.0003751	-0.057012	-3.0632E-05	0.64113	0.00034447	537.2848944138349	41.987	0.19366	41.987	41.86	42.053	0					10	5	2	0	0	0	0.048471	1	16700	16700		95.815	27.028	1	117750			40394	11049	27098	27204	40908	40908					0.021934390976639406
SVFQETLLH	9	Unmodified	_SVFQETLLH_					0	0	0		ENST00000602661.5_1_9:108363519-108366511:+|nuORF	ENST00000602661.5_1_9:108363519-108366511:+|nuORF	ENST00000602661.5_1_9:108363519-108366511:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2865600585938	2	537.284931	1072.55531	1.9733	0.0010602	-0.065542	-3.5215E-05	1.9078	0.001025	537.284545992583	41.984	0.29473	41.984	41.848	42.143	0					15	8	3	0	0	0	0.15163	1	16695	16695		67.494	16.301	1	165950			40395	11049	27098	27204	40909	40909					0.021934390976639406
SVFQQGMKNK	10	Unmodified	_SVFQQGMKNK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.5376892089844	3	389.537736	1165.59138	0.87014	0.00033895	-1.1954	-0.00046565	-0.32525	-0.0001267	389.53739318849745	21.479	0.44194	21.479	21.35	21.792	0					25	10	5	0	0	0	0.28855	1	6822	6822		68.626	13.903	1	6214400			40396	1091	27099	27205	40910	40910					0.015205730028583275
SVFQQGMKNK	10	Unmodified	_SVFQQGMKNK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.8034057617188	2	583.802965	1165.59138	0.016919	9.8774E-06	0.34282	0.00020014	0.35974	0.00021002	583.8034893269802	21.47	0.13881	21.47	21.38	21.518	0					12	3	4	0	0	0	0.0032625	1	6835	6835		190.26	99.485	1	1318600			40397	1091	27099	27205	40911	40911					0.015205730028583275
SVFQQGMKNK	10	Unmodified	_SVFQQGMKNK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.8035278320312	2	583.802965	1165.59138	-0.0045147	-2.6357E-06	0.061569	3.5944E-05	0.057054	3.3309E-05	583.8031773428336	21.151	0.29693	21.151	21.053	21.35	0					21	9	4	0	0	0	0.01242	1	6016	6016		134.77	27.758	1	1939700			40398	1091	27099	27205	40912	40912					0.015205730028583275
SVFQQGMKNK	10	Unmodified	_SVFQQGMKNK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.53759765625	3	389.537736	1165.59138	0.15092	5.8791E-05	-0.82636	-0.0003219	-0.67544	-0.00026311	389.5375215918985	21.381	0.56834	21.381	21.273	21.842	0					26	11	5	0	0	0	0.41055	1	7068	7068		55.084	13.657	1	8546500			40399	1091	27099	27205	40913	40913					0.015205730028583275
SVFQQGMKNK	10	Unmodified	_SVFQQGMKNK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	583.8028564453125	2	583.802965	1165.59138	-0.28269	-0.00016504	-0.016898	-9.8648E-06	-0.29959	-0.0001749	583.8031627803714	21.349	0.51874	21.349	21.24	21.759	0					31	10	6	0	0	0	0.0043426	1	7076	7076		172.25	50.073	1	11827000			40400	1091	27099	27205	40914	40914					0.015205730028583275
SVFQQGMKNK	10	Unmodified	_SVFQQGMKNK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.53765869140625	3	389.537736	1165.59138	-0.69951	-0.00027249	0.11754	4.5786E-05	-0.58197	-0.0002267	389.5378911387868	21.379	0.46643	21.379	21.238	21.704	0					28	9	6	0	0	0	0.1725	1	6944	6944		82.831	33.294	1	7971700			40401	1091	27099	27205	40915	40915					0.015205730028583275
SVFQQGMKNK	10	Oxidation (M)	_SVFQQGM(Oxidation (M))KNK_		SVFQQGM(1)KNK		SVFQQGM(72)KNK	0	0	1		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.7999877929688	2	591.800423	1181.58629	0.14142	8.3693E-05	-0.068436	-4.05E-05	0.072986	4.3193E-05	591.8003398166163	17.503	0.22756	17.503	17.429	17.657	0					13	7	3	0	0	0	0.26198	1	4385	4385		71.877	25.926	1	184320			40402	1091	27099	27206	40916	40916		50			0.0027626914024949656
SVFQQGMKNK	10	Oxidation (M)	_SVFQQGM(Oxidation (M))KNK_		SVFQQGM(1)KNK		SVFQQGM(46)KNK	0	0	1		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.8694763183594	3	394.869374	1181.58629	0.10936	4.3182E-05	-0.60671	-0.00023957	-0.49736	-0.00019639	394.8692293010657	17.76	0.27072	17.76	17.651	17.922	0					11	5	3	0	0	0	0.48965	1	5323	5323		46.457	18.813	1	740930			40403	1091	27099	27206	40917	40917		50			0.0027626914024949656
SVFQQGMKNK	10	Oxidation (M)	_SVFQQGM(Oxidation (M))KNK_		SVFQQGM(1)KNK		SVFQQGM(91)KNK	0	0	1		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.8006591796875	2	591.800423	1181.58629	-0.060557	-3.5838E-05	0.33268	0.00019688	0.27212	0.00016104	591.8008264782052	17.749	0.27075	17.749	17.668	17.939	0					13	5	4	0	0	0	0.12763	1	5327	5327		90.601	7.8504	1	884400			40404	1091	27099	27206	40918	40918		50			0.0027626914024949656
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.7587890625	2	513.758746	1025.50294	0.037261	1.9143E-05	0.17523	9.0024E-05	0.21249	0.00010917	513.7588346322414	24.18	0.31465	24.18	24.052	24.367	0					29	10	4	0	0	0	0.013298	1	7081	7081		133.99	56.676	1	1981300			40405	5039	27100	27207	40919	40919					-0.008791440359800617
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.7587280273438	2	513.758746	1025.50294	0.017148	8.8101E-06	0.0011947	6.1381E-07	0.018343	9.4239E-06	513.7586557979412	24.485	0.40026	24.485	24.34	24.741	0					32	9	5	0	0	0	0.0019365	1	8236	8236		174.86	76.283	1	11202000			40406	5039	27100	27207	40920	40920					-0.008791440359800617
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.759033203125	2	513.758746	1025.50294	-0.21561	-0.00011077	0.60473	0.00031069	0.38912	0.00019992	513.7589744454452	24.189	0.45039	24.189	24.053	24.504	0					36	14	4	0	0	0	0.0019365	1	7358	7358		174.86	86.688	1	2329700			40407	5039	27100	27207	40921	40921					-0.008791440359800617
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7586669921875	2	513.758746	1025.50294	1.3266	0.00068155	-1.1538	-0.00059278	0.17278	8.8765E-05	513.7580178517522	24.458	0.86013	24.458	24.246	25.106	0					37	17	4	0	0	0	0.00054273	1	8547	8547		187.5	83.447	1	11465000			40408	5039	27100	27207	40922	40922					-0.008791440359800617
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.7586669921875	2	513.758746	1025.50294	0.57881	0.00029737	-0.11033	-5.6683E-05	0.46848	0.00024068	513.7586129268172	24.266	0.35549	24.266	24.124	24.48	0					16	8	4	0	0	0	0.015992	1	7530	7530		128.6	48.89	1	680280			40409	5039	27100	27207	40923	40923					-0.008791440359800617
SVFQTTDTKSK	11	Unmodified	_SVFQTTDTKSK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	621.3221435546875	2	621.322242	1240.62993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.181	1	20.181	19.681	20.681	0								0	0	0	0.38703	1	6501	6501		37.508	0	1				40410	5039	27101	27208	40924	40924					0.019241571183329143
SVFRASKEL	9	Unmodified	_SVFRASKEL_					0	0	0		nc|ENSG00000132196|P56937-3|HSD17B7;ENST00000463037.5_1_1:162762392-162766419:+|nuORF;ENST00000485405.5_1_1:162760500-162767724:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7	nc|ENSG00000132196|P56937-3|HSD17B7	nc|ENSG00000132196|P56937-3|HSD17B7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7930908203125	2	518.792924	1035.57129	-1.3912	-0.00072172	1.0479	0.00054364	-0.34326	-0.00017808	518.7937533336925	15.183	0.080679	15.183	15.124	15.205	0					5	3	2	0	0	0	0.33044	1	3355	3355		47.657	3.2801	1	47346			40411	11526	27102	27209	40925	40925					0.05493145334571636
SVFRVLRR	8	Unmodified	_SVFRVLRR_					0	0	0		nc|ENSG00000257524|Q969X2-2|ST6GALNAC6;ENSG00000160408|ENST00000373146|ST6GALNAC6;nc|ENSG00000257524|Q969X2-3|ST6GALNAC6	nc|ENSG00000257524|Q969X2-2|ST6GALNAC6	nc|ENSG00000257524|Q969X2-2|ST6GALNAC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	344.8853759765625	3	344.885687	1031.63523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.569	1	13.569	13.069	14.069	0								0	0	0	1.7419	1	2678	2678		16.473	2.336	1				40412	5362	27103	27210	40926	40926					0.12067970282168972
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	383.2086181640625	3	383.208384	1146.60332	0.53617	0.00020546	-0.69164	-0.00026504	-0.15547	-5.9578E-05	383.20825164750715	22.473	0.20919	22.473	22.396	22.605	0					13	6	3	0	0	0	0.60147	1	6353	6353		34.087	2.4522	1	235620			40413	7190	27104	27211	40927	40927					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.309326171875	2	574.308938	1146.60332	-0.11199	-6.432E-05	0.61326	0.0003522	0.50126	0.00028788	574.3093587111305	22.798	0.13245	22.798	22.714	22.846	0					8	3	3	0	0	0	0.31405	1	7469	7469		61.765	15.792	1	673010			40414	7190	27104	27211	40928	40928					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	574.3090209960938	2	574.308938	1146.60332	0.063124	3.6253E-05	0.31999	0.00018377	0.38311	0.00022003	574.3092305358119	22.503	0.16946	22.503	22.435	22.604	0					11	5	3	0	0	0	0.12266	1	6646	6646		79.489	21.678	1	109570			40415	7190	27104	27211	40929	40929					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.3091430664062	2	574.308938	1146.60332	1.9435	0.0011162	-0.5447	-0.00031283	1.3988	0.00080333	574.3079551131133	22.702	0.81188	22.702	22.4	23.212	0					30	16	4	0	0	0	0.077442	1	7735	7735		97.597	44.508	1	1774300			40416	7190	27104	27211	40930	40930					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.2081604003906	3	383.208384	1146.60332	0.27167	0.0001041	-0.53776	-0.00020607	-0.26609	-0.00010197	383.2082017224684	22.584	0.10647	22.584	22.529	22.635	0					4	2	2	0	0	0	0.59255	1	6762	6762		35.178	4.6094	1	185730			40417	7190	27104	27211	40931	40931					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.2083435058594	3	383.208384	1146.60332	-0.14031	-5.3768E-05	0.1397	5.3534E-05	-0.00061101	-2.3414E-07	383.2084144644885	22.567	0.23375	22.567	22.517	22.75	0					11	5	3	0	0	0	0.61002	1	6754	6754		33.039	7.9134	1	234270			40418	7190	27104	27211	40932	40932					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.3093872070312	2	574.308938	1146.60332	-1.507	-0.00086549	1.8378	0.0010555	0.33083	0.00019	574.3101479759922	22.6	0.18942	22.6	22.505	22.694	0					9	4	3	0	0	0	0.52848	1	6770	6770		30.569	11.465	1	174040			40419	7190	27104	27211	40933	40933					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.20831298828125	3	383.208384	1146.60332	-0.55906	-0.00021424	0.25319	9.7024E-05	-0.30587	-0.00011721	383.2084522442009	22.696	0.41775	22.696	22.589	23.007	0					18	8	3	0	0	0	0.44971	1	7597	7597		50.791	0.75773	1	2527200			40420	7190	27104	27211	40934	40934					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.3095092773438	2	574.308938	1146.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.76	1	22.76	22.26	23.26	0								0	0	0	0.31752	1	7618	7618		43.419	27.412	1				40421	7190	27104	27211	40935	40935					0.035885130176893654
SVFSDKLHSK	10	Unmodified	_SVFSDKLHSK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.3091430664062	2	574.308938	1146.60332	3.3409	0.0019187	-2.3927	-0.0013742	0.94811	0.00054451	574.3071603866081	22.713	0.7115	22.713	22.455	23.167	0					21	14	3	0	0	0	0.2035	1	7607	7607		66.92	11.416	1	1464100			40422	7190	27104	27211	40936	40936					0.035885130176893654
SVFSICHSK	9	Unmodified	_SVFSICHSK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.25225830078125	2	504.252577	1006.4906	-0.061709	-3.1117E-05	0.48201	0.00024306	0.42031	0.00021194	504.25252392462784	28.413	0.41161	28.413	28.296	28.708	0					27	16	2	0	0	0	0.16806	1	8856	8856		65.465	21.088	1	137470			40423	11716	27105	27212	40937	40937					-0.012384589799808055
SVFSICHSK	9	Unmodified	_SVFSICHSK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2522888183594	2	504.252577	1006.4906	-0.45496	-0.00022941	-0.08592	-4.3325E-05	-0.54087	-0.00027274	504.2526583312918	28.698	1.0505	28.698	28.548	29.599	0					52	22	3	0	0	0	0.013878	2	10510	10510;10678		132.76	50.453	1	1176000			40424	11716	27105	27212	40938;40939	40938					-0.012384589799808055
SVFSQSGNSR	10	Unmodified	_SVFSQSGNSR_					0	0	0		CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7575073242188	2	534.757069	1067.49959	1.7872	0.0009557	-1.1848	-0.00063361	0.60232	0.0003221	534.756439639259	18.552	0.26846	18.552	18.443	18.711	0					10	5	3	0	0	0	0.38179	1	5724	5724		58.246	6.7185	1	2787600			40425	437	27106	27213	40940	40940					-0.031463940899584486
SVFSQSGNSR	10	Unmodified	_SVFSQSGNSR_					0	0	0		CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7577514648438	2	534.757069	1067.49959	1.0944	0.00058523	0.25047	0.00013394	1.3449	0.00071917	534.7571976047367	18.413	0.15177	18.413	18.335	18.487	0					10	4	3	0	0	0	0.38179	1	4792	4792		58.246	5.3095	1	236460			40426	437	27106	27213	40941	40941					-0.031463940899584486
SVFSQSGNSR	10	Unmodified	_SVFSQSGNSR_					0	0	0		CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7575073242188	2	534.757069	1067.49959	-1.3449	-0.00071918	2.5821	0.0013808	1.2372	0.00066161	534.758301647771	18.408	0.1855	18.408	18.327	18.512	0					10	5	3	0	0	0	0.48965	1	4787	4787		46.457	7.6506	1	142010			40427	437	27106	27213	40942	40942					-0.031463940899584486
SVFSQSGNSR	10	Unmodified	_SVFSQSGNSR_					0	0	0		CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7571411132812	2	534.757069	1067.49959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.569	1	18.569	18.069	19.069	0								0	0	0	0.17743	1	5582	5582		66.962	6.8437	1				40428	437	27106	27213	40943	40943					-0.031463940899584486
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.2977294921875	2	526.298373	1050.58219	0.62452	0.00032868	0.014597	7.6825E-06	0.63911	0.00033636	526.2983482400517	22.468	0.24405	22.468	22.384	22.628	0					15	7	3	0	0	0	0.048471	1	6350	6350		95.815	51.698	1	504940			40429	3515	27107	27214	40944	40944					0.058925477088678235
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2985229492188	2	526.298373	1050.58219	0.10035	5.2812E-05	0.1534	8.0735E-05	0.25375	0.00013355	526.298512599788	22.801	0.29356	22.801	22.714	23.007	0					17	7	4	0	0	0	0.010494	1	7464	7464		139.97	71.184	1	2854700			40430	3515	27107	27214	40945	40945					0.058925477088678235
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.298583984375	2	526.298373	1050.58219	0.44715	0.00023533	0.24179	0.00012725	0.68894	0.00036259	526.2983985869424	22.508	0.16946	22.508	22.435	22.604	0					11	5	3	0	0	0	0.012231	1	6640	6640		136.27	70.803	1	462610			40431	3515	27107	27214	40946	40946					0.058925477088678235
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2982177734375	2	526.298373	1050.58219	1.7656	0.00092923	-1.7853	-0.00093958	-0.019673	-1.0354E-05	526.2974651722188	22.702	0.26164	22.702	22.6	22.862	0					15	5	4	0	0	0	0.013878	1	7732	7732		132.76	66.329	1	3884400			40432	3515	27107	27214	40947	40947					0.058925477088678235
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.298583984375	2	526.298373	1050.58219	-1.2228	-0.00064354	1.978	0.001041	0.75526	0.00039749	526.2993210591255	22.6	0.23196	22.6	22.505	22.737	0					12	5	3	0	0	0	0.032052	1	6765	6765		107.01	59.35	1	871000			40433	3515	27107	27214	40948	40948					0.058925477088678235
SVFVATFLR	9	Unmodified	_SVFVATFLR_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3008422851562	2	520.300384	1038.58622	1.6229	0.00084438	-0.35578	-0.00018511	1.2671	0.00065926	520.3002257247384	48.06	0.14006	48.06	47.999	48.139	0					11	7	2	0	0	0	0.046074	1	19123	19123		101.25	53.337	1	57642			40434	1927	27108	27215	40949	40949					0.06846637202534112
SVFVATFLR	9	Unmodified	_SVFVATFLR_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.3012084960938	2	520.300384	1038.58622	3.3689	0.0017528	-1.8707	-0.00097332	1.4982	0.0007795	520.2992292817587	48.091	0.1203	48.091	48.013	48.133	0					9	6	2	0	0	0	0.31937	1	19119	19119		49.536	25.333	1	51708			40435	1927	27108	27215	40950	40950					0.06846637202534112
SVFVETFVQK	10	Unmodified	_SVFVETFVQK_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.3209838867188	2	592.321514	1182.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.044	1	41.044	40.544	41.544	0								0	0	0	0.2486	1	13192	13192		58.246	26.612	1				40436	6258	27109	27216	40951	40951					0.04446567820264136
SVFVETFVQK	10	Unmodified	_SVFVETFVQK_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.3216552734375	2	592.321514	1182.62847	0.27224	0.00016125	0.016099	9.5356E-06	0.28834	0.00017079	592.823157099653	41.335	0.22466	41.335	41.241	41.466	0					28	11	3	0	0	0	0.012989	1	15697	15697		131.62	59.739	1	335170			40437	6258	27109	27216	40952	40952					0.04446567820264136
SVFVETFVQK	10	Unmodified	_SVFVETFVQK_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	592.3216552734375	2	592.321514	1182.62847	-0.53759	-0.00031843	0.77469	0.00045886	0.2371	0.00014044	592.8239145949087	41.115	0.10356	41.115	41.047	41.151	0					9	6	2	0	0	0	0.24329	1	13686	13686		74.165	31.301	1	65757			40438	6258	27109	27216	40953	40953					0.04446567820264136
SVFVETFVQK	10	Unmodified	_SVFVETFVQK_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	592.3216552734375	2	592.321514	1182.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.095	1	41.095	40.595	41.595	0								0	0	0	0.3598	1	14521	14521		41.427	8.6142	1				40439	6258	27109	27216	40954	40954					0.04446567820264136
SVFVETFVQK	10	Unmodified	_SVFVETFVQK_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	592.319580078125	2	592.321514	1182.62847	1.4302	0.00084713	-0.68555	-0.00040606	0.74463	0.00044106	592.3211055378262	41.267	0.22548	41.267	41.145	41.371	0					12	5	3	0	0	0	0.01215	1	16382	16382		134.77	79.989	1	261840			40440	6258	27109	27216	40955	40955					0.04446567820264136
SVFYDVVK	8	Unmodified	_SVFYDVVK_					0	0	0			REV__tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	REV__tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7586975097656	2	478.758018	955.501483	-0.45459	-0.00021764	2.0632	0.0009878	1.6087	0.00077016	478.7589053825548	15.856	0.31124	15.856	15.752	16.064	0					13	6	4	0	0	0	0.59411	1	4428	4428		50.025	0.58299	1	1655600	+		40441	21903	27110	27217	40956	40956					0.021952666659558417
SVFYGAPSK	9	Unmodified	_SVFYGAPSK_					0	0	0		ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.24761962890625	2	478.247818	954.481082	-0.1167	-5.5812E-05	-0.66222	-0.00031671	-0.77892	-0.00037252	478.2476240669	28.39	0.20743	28.39	28.291	28.499	0					7	4	2	0	0	0	0.18416	1	10387	10387		63.534	15.618	1	176950			40442	7863	27111	27218	40957	40957					0.002020960061486221
SVFYGAPSK	9	Unmodified	_SVFYGAPSK_					0	0	0		ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2475891113281	2	478.247818	954.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.198	1	28.198	27.698	28.698	0								0	0	0	0.26578	1	9328	9328		41.427	9.4718	1				40443	7863	27111	27218	40958	40958					0.002020960061486221
SVFYGVIRAL	10	Unmodified	_SVFYGVIRAL_					0	0	0			REV__ENST00000419045.1_1_X:48634410-48634758:-|nuORF	REV__ENST00000419045.1_1_X:48634410-48634758:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	375.52471923828125	3	375.553603	1123.63898	0.29411	0.00011046	0.011284	4.2377E-06	0.3054	0.00011469	375.55326724132385	37.146	0.1531	37.146	37.026	37.179	0					6	4	2	0	0	0	0.65213	1	14032	14032		26.063	0	1	44955	+		40444	16182	27112	27219	40959	40959					0.08210595265381926
SVFYTIFIP	9	Unmodified	_SVFYTIFIP_					0	0	0		OR5I1|p.Y292*|1|0.03|ENSG00000167825|chr11:55935527-55935528|AA/-|frameshift_variant;ENSG00000167825|ENST00000301532|OR5I1	OR5I1|p.Y292*|1|0.03|ENSG00000167825|chr11:55935527-55935528|AA/-|frameshift_variant	OR5I1|p.Y292*|1|0.03|ENSG00000167825|chr11:55935527-55935528|AA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.8661193847656	3	362.867188	1085.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.849	1	34.849	34.349	35.349	0								0	0	0	0.36266	1	12369	12369		21.96	4.4919	1				40445	6031	27113	27220	40960	40960					0.04036699251173559
SVGAKNATL	9	Unmodified	_SVGAKNATL_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.7453308105469	2	430.745442	859.476331	0.17264	7.4366E-05	-0.35447	-0.00015269	-0.18182	-7.832E-05	430.74535654585105	28.825	0.16985	28.825	28.753	28.923	0					9	5	2	0	0	0	0.21263	1	9045	9045		60.118	8.7828	1	115730			40446	1339	27114	27221	40961	40961					0.04097211863393113
SVGAKQKKWK	10	Unmodified	_SVGAKQKKWK_					0	0	0		GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant;ENSG00000158292|ENST00000377893|GPR153	GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant	GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.2351379394531	3	387.236385	1158.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.919	1	15.919	15.419	16.419	0								0	0	0	0.38475	1	4212	4212		35.152	1.2304	1				40447	5254	27115	27222	40962	40962					0.11433088905255318
SVGAPPWAK	9	Unmodified	_SVGAPPWAK_					0	0	0			REV__nc|ENSG00000143437|P27540-2|ARNT	REV__nc|ENSG00000143437|P27540-2|ARNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.7482604980469	2	456.750527	911.486502	-2.6386	-0.0012052	-1.9046	-0.00086992	-4.5432	-0.0020751	456.74951409333966	18.232	0.19981	18.232	18.135	18.335	0					12	5	3	0	0	0	0.16524	1	4722	4722		65.803	65.803	1	548540	+		40448	15192	27116	27223	40963	40963					0.027218195886121066
SVGASYDLDW	10	Unmodified	_SVGASYDLDW_					0	0	0		tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1	tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1	tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.7474365234375	2	556.748379	1111.4822	-0.47564	-0.00026481	-2.2685	-0.001263	-2.7441	-0.0015278	556.7475177903235	16.94	0.34762	16.94	16.82	17.168	0					22	13	3	0	0	0	0.61187	1	4126	4126		32.812	3.6424	1	157600			40449	22803	27117	27224	40964	40964					-0.06907734415631239
SVGCVVRQ	8	Unmodified	_SVGCVVRQ_					0	0	0			REV__nc|ENSG00000099849|Q02833-3|RASSF7	REV__nc|ENSG00000099849|Q02833-3|RASSF7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.22637939453125	2	424.226362	846.438172	-1.1234	-0.00047657	1.8703	0.00079343	0.7469	0.00031685	424.22707928686447	32.45	0.21283	32.45	32.365	32.578	0					12	8	2	0	0	0	0.7126	1	10852	10852		31.955	0	1	116070	+		40450	13501	27118	27225	40965	40965					0.008810026770674995
SVGEKIFKT	9	Unmodified	_SVGEKIFKT_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7899169921875	2	504.78985	1007.56515	1.0459	0.00052796	-0.65986	-0.00033309	0.38605	0.00019487	504.789697831762	31.996	0.29646	31.996	31.894	32.191	0					13	6	4	0	0	0	0.1424	1	12130	12130		69.628	2.134	1	673440			40451	3864	27119	27226	40966	40966					0.06166627103038991
SVGELHNIL	9	Unmodified	_SVGELHNIL_					0	0	0			REV__ENSG00000206113|ENST00000635017|CFAP99	REV__ENSG00000206113|ENST00000635017|CFAP99	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.27227783203125	2	491.271824	980.529095	-0.062367	-3.0639E-05	0.031024	1.5241E-05	-0.031342	-1.5398E-05	491.27189934251845	38.565	0.23298	38.565	38.451	38.684	0					22	13	2	0	0	0	0.50858	1	12560	12560		31.53	7.0106	1	109820	+		40452	17540	27120	27227	40967	40967					0.03805169926192775
SVGESSSKGP	10	Unmodified	_SVGESSSKGP_					0	0	0		ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000186395|ENST00000269576|KRT10	ENSG00000186395|ENST00000269576|KRT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.76898193359375	2	467.727446	933.44034	-0.50944	-0.00023828	-1.7764	-0.00083085	-2.2858	-0.0010691	467.726521277773	15.743	0.31769	15.743	15.497	15.815	0					14	6	3	0	0	0	0.31894	1	4190	4190		65.157	8.7235	1	123070		+	40453	639	27121	27228	40968	40968					-0.02904290104129359
SVGESVHGK	9	Unmodified	_SVGESVHGK_					0	0	0		ENSG00000157916|ENST00000605895|RER1;ENST00000493207.1_1_1:2327229-2327331:+|nuORF	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.23248291015625	2	450.232699	898.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.361	1	14.361	13.861	14.861	0								0	0	0	0.063706	1	3554	3554		82.241	10.363	1				40454	5237	27122	27229	40969	40969					-0.002442626590436703
SVGGRHGPWK	10	Unmodified	_SVGGRHGPWK_					0	0	0		ENST00000380751.9_2_5:69321199-69322288:+|nuORF	ENST00000380751.9_2_5:69321199-69322288:+|nuORF	ENST00000380751.9_2_5:69321199-69322288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.8614196777344	3	360.86143	1079.56246	-0.096	-3.4643E-05	0.024134	8.709E-06	-0.071866	-2.5934E-05	360.86150468829595	21.025	0.17582	21.025	20.944	21.12	0					10	4	3	0	0	0	0.7005	1	6013	6013		20.837	1.7336	1	448720			40455	9101	27123	27230	40970	40970					0.02586216488748505
SVGGSTALR	9	Unmodified	_SVGGSTALR_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.235107421875	2	424.235242	846.45593	-0.30027	-0.00012739	0.090495	3.8391E-05	-0.20978	-8.8996E-05	424.2351506971824	20.137	0.11586	20.137	20.079	20.195	0					4	2	2	0	0	0	0.085655	1	6492	6492		82.75	36.799	1	225130			40456	1093	27124	27231	40971	40971					0.026560412035678382
SVGGSTALR	9	Unmodified	_SVGGSTALR_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.23516845703125	2	424.235242	846.45593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.181	1	20.181	19.681	20.681	0								0	0	0	0.22284	1	6369	6369		47.657	8.8512	1				40457	1093	27124	27231	40972	40972					0.026560412035678382
SVGHTVNRILG	11	Unmodified	_SVGHTVNRILG_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	384.8876037597656	3	384.887645	1151.64111	0.5419	0.00020857	-0.7785	-0.00029963	-0.2366	-9.1065E-05	384.88719915305956	15.626	0.12177	15.626	15.575	15.697	0					6	5	2	0	0	0	0.70609	1	3440	3440		27.047	1.9213	1	48954	+		40458	13022	27125	27232	40973	40973					0.07135024003196122
SVGKDSHLK	9	Unmodified	_SVGKDSHLK_					0	0	0		nc|ENSG00000198865|Q4G0S7-2|CCDC152;ENSG00000198865|ENST00000361970|CCDC152	nc|ENSG00000198865|Q4G0S7-2|CCDC152	nc|ENSG00000198865|Q4G0S7-2|CCDC152	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7695617675781	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.017	1	14.017	13.517	14.517	0								0	0	0	0.099216	1	3323	3323		71.877	0	1				40459	7628	27126	27233	40974	40974					0.038362857834158604
SVGKDSHLK	9	Unmodified	_SVGKDSHLK_					0	0	0		nc|ENSG00000198865|Q4G0S7-2|CCDC152;ENSG00000198865|ENST00000361970|CCDC152	nc|ENSG00000198865|Q4G0S7-2|CCDC152	nc|ENSG00000198865|Q4G0S7-2|CCDC152	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.76922607421875	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.976	1	13.976	13.476	14.476	0								0	0	0	0.29356	1	3525	3525		36.447	9.7538	1				40460	7628	27126	27233	40975	40975					0.038362857834158604
SVGKGAVHD	9	Unmodified	_SVGKGAVHD_					0	0	0		ENSG00000161634|ENST00000293371|DCD	ENSG00000161634|ENST00000293371|DCD	ENSG00000161634|ENST00000293371|DCD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2270202636719	2	435.227417	868.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.793	1	14.793	14.293	15.293	0								0	0	0	0.24544	1	3261	3261		44.377	5.571	1				40461	5415	27127	27234	40976	40976					0.0007975468652148265
SVGKGAVHD	9	Unmodified	_SVGKGAVHD_					0	0	0		ENSG00000161634|ENST00000293371|DCD	ENSG00000161634|ENST00000293371|DCD	ENSG00000161634|ENST00000293371|DCD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2272033691406	2	435.227417	868.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.032	1	15.032	14.532	15.532	0								0	0	0	0.3245	1	4029	4029		30.318	1.1682	1				40462	5415	27127	27234	40977	40977					0.0007975468652148265
SVGKGLQVK	9	Unmodified	_SVGKGLQVK_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF;ENST00000514442.5_1_5:149754639-149771259:+|nuORF;nc|ENSG00000070814|Q13428-5|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.284423828125	2	458.284734	914.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.974	1	18.974	18.474	19.474	0								0	0	0	0.31838	1	5918	5918		31.53	2.3803	1				40463	10263	27128	27235	40978	40978					0.09422064168472843
SVGKNLASK	9	Unmodified	_SVGKNLASK_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2663269042969	2	452.266542	902.51853	0.25308	0.00011446	-0.56163	-0.00025401	-0.30855	-0.00013955	452.2662699517281	15.717	0.094404	15.717	15.669	15.763	0					4	2	2	0	0	0	0.022698	1	4127	4127		117.53	24.33	1	334350			40464	4179	27129	27236	40979	40979					0.06337187271753919
SVGKNLASK	9	Unmodified	_SVGKNLASK_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.26629638671875	2	452.266542	902.51853	-0.11438	-5.1729E-05	-0.12015	-5.4341E-05	-0.23453	-0.00010607	452.2664010127847	15.695	0.11784	15.695	15.634	15.752	0					4	2	2	0	0	0	0.032383	1	4351	4351		106.68	18.929	1	752120			40465	4179	27129	27236	40980	40980					0.06337187271753919
SVGKNLASK	9	Unmodified	_SVGKNLASK_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.26617431640625	2	452.266542	902.51853	-0.41097	-0.00018587	-0.29526	-0.00013354	-0.70623	-0.00031941	452.2663659017248	15.706	0.16715	15.706	15.596	15.763	0					8	3	3	0	0	0	0.11411	1	4210	4210		76.17	9.7404	1	624350			40466	4179	27129	27236	40981	40981					0.06337187271753919
SVGLFLVRP	9	Unmodified	_SVGLFLVRP_					0	0	0		ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.8049011230469	2	494.302927	986.591301	-0.75325	-0.00037233	-3.4043	-0.0016828	-4.1576	-0.0020551	494.30097316327254	21.7	0.26596	21.7	21.592	21.858	0					15	5	4	0	0	0	0.20551	1	7297	7297		60.972	0.85368	1	2447500			40467	9040	27130	27237	40982	40982					0.09746941065179726
SVGLHTGEV	9	Unmodified	_SVGLHTGEV_					0	0	0		ENSG00000253767|ENST00000398604|PCDHGA8;PCDHGA8|p.N788Kfs*2|1|0.27|ENSG00000253767|chr5:141395171-141395172|-/A|frameshift_variant;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;PCDHGA1|p.Q772Sfs*79|1|0.05|ENSG00000204956|chr5:141332994-141332994|C/-|frameshift_variant;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000204956|ENST00000517417|PCDHGA1;PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant;ENSG00000253159|ENST00000252085|PCDHGA12;PCDHGA8|p.L712Sfs*33|1|0.15|ENSG00000253767|chr5:141394944-141394945|-/T|frameshift_variant;ENSG00000081853|ENST00000394576|PCDHGA2;PCDHGA2|p.K788Rfs*64|1|0.06|ENSG00000081853|chr5:141341330-141341330|A/-|frameshift_variant;PCDHGA3|p.R627C|1|0.35|ENSG00000254245|chr5:141345912-141345912|C/T|missense_variant;PCDHGA1|p.R627H|1|0.52|ENSG00000204956|chr5:141332564-141332564|G/A|missense_variant;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	ENSG00000253767|ENST00000398604|PCDHGA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.73516845703125	2	449.735074	897.455596	-1.1826	-0.00053187	1.0529	0.00047353	-0.12972	-5.8338E-05	449.73562273477	19.031	0.12853	19.031	18.936	19.065	0					6	4	2	0	0	0	0.47038	1	5091	5091		35.618	0	1	52339			40468	8002;8053	27131	27238	40983	40983					0.0027662148371518924
SVGLPSRTK	9	Unmodified	_SVGLPSRTK_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.779541015625	2	472.779816	943.545079	-0.34335	-0.00016233	-0.11842	-5.5988E-05	-0.46178	-0.00021832	472.77972321752696	19.67	0.24847	19.67	19.455	19.704	0					13	7	2	0	0	0	0.42902	1	5093	5093		39.253	5.0803	1	111940			40469	1373	27132	27239	40984	40984					0.07104876163100471
SVGLPSRTK	9	Unmodified	_SVGLPSRTK_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7795104980469	2	472.779816	943.545079	-0.55765	-0.00026365	-0.2253	-0.00010652	-0.78295	-0.00037016	472.7797381979575	20.014	0.4644	20.014	19.6	20.064	0					22	10	3	0	0	0	0.063171	1	6127	6127		90.601	16.346	1	497450			40470	1373	27132	27239	40985	40985					0.07104876163100471
SVGLPSRTK	9	Unmodified	_SVGLPSRTK_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.7795715332031	2	472.779816	943.545079	-2.469	-0.0011673	1.5689	0.00074177	-0.9	-0.0004255	472.7804210884978	19.739	0.30133	19.739	19.479	19.781	0					12	7	2	0	0	0	0.41113	1	5407	5407		40.778	5.1599	1	110860			40471	1373	27132	27239	40986	40986					0.07104876163100471
SVGLVLGAFI	10	Unmodified	_SVGLVLGAFI_					0	0	0		ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.8659973144531	3	325.867299	974.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.509	1	18.509	18.009	19.009	0								0	0	0	0.4201	1	5693	5693		22.58	1.6327	1				40472	6217	27133	27240	40987	40987					0.0917611897103825
SVGLVYWEI	9	Unmodified	_SVGLVYWEI_					0	0	0		nc|ENSG00000123612|Q8NER5-2|ACVR1C;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C	nc|ENSG00000123612|Q8NER5-2|ACVR1C	nc|ENSG00000123612|Q8NER5-2|ACVR1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2831420898438	2	533.2844	1064.55425	-1.3007	-0.00069366	-1.0593	-0.00056493	-2.3601	-0.0012586	533.2840826828825	27.324	0.90439	27.324	27.003	27.907	0					46	22	3	0	0	0	0.26904	1	8873	8873		53.351	8.9743	1	275430			40473	3333	27134	27241	40988	40988					0.024552247287601858
SVGMYLISK	9	Unmodified	_SVGMYLISK_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;ENST00000462436.1_1_7:97484616-97487685:-|nuORF;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-2|ASNS	TRRAP-ASNS|1|fusion;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.27301025390625	2	499.272978	996.531403	-0.73022	-0.00036458	1.0321	0.00051529	0.30186	0.00015071	499.27349532682143	38.047	0.33962	38.047	37.944	38.283	0					15	7	3	0	0	0	0.25761	1	14935	14935		54.722	11.858	1	272030			40474	23071;1453	27135	27242	40989	40989					0.032998823396496846
SVGMYLISK	9	Unmodified	_SVGMYLISK_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;ENST00000462436.1_1_7:97484616-97487685:-|nuORF;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-2|ASNS	TRRAP-ASNS|1|fusion;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2725830078125	2	499.272978	996.531403	1.0581	0.00052829	-1.5535	-0.00077562	-0.49537	-0.00024733	499.27221218752277	38.049	0.19523	38.049	37.974	38.17	0					6	4	2	0	0	0	0.020674	1	14929	14929		120.87	43.551	1	365200			40475	23071;1453	27135	27242	40990	40990					0.032998823396496846
SVGPGGAGVVQ	11	Unmodified	_SVGPGGAGVVQ_					0	0	0		ENST00000529721.5_1_11:75201351-75201700:-|nuORF	ENST00000529721.5_1_11:75201351-75201700:-|nuORF	ENST00000529721.5_1_11:75201351-75201700:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.29718017578125	2	464.248349	926.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.966	1	43.966	43.466	44.466	0								0	0	0	0.3557	1	16535	16535		44.377	3.8046	1				40476	10414	27136	27243	40991	40991					0.015963103750550545
SVGPPSKDK	9	Unmodified	_SVGPPSKDK_					0	0	0		ENST00000598550.5_1_19:50059857-50060422:-|nuORF;ENST00000596477.1_1_19:50059010-50060533:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP	ENST00000598550.5_1_19:50059857-50060422:-|nuORF	ENST00000598550.5_1_19:50059857-50060422:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7503967285156	2	457.750724	913.486896	-0.65528	-0.00029996	0.13792	6.3133E-05	-0.51736	-0.00023682	457.75075650159	14.576	0.62153	14.576	14.058	14.68	0					38	13	4	0	0	0	0.10915	2	3844	3673;3844		77.318	8.5308	1	1090300			40477	4498	27137	27244	40992;40993	40993					0.026691945178072274
SVGPVSPNR	9	Unmodified	_SVGPVSPNR_					0	0	0		LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2	LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant	LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7481689453125	2	456.748516	911.482479	-0.14603	-6.6697E-05	-0.37863	-0.00017294	-0.52466	-0.00023964	456.74826368059144	20.426	0.41616	20.426	20.229	20.645	0					12	8	3	0	0	0	0.28897	1	6635	6635		51.193	8.3284	1	168770			40478	3693	27138	27245	40994	40994					0.02319730094905026
SVGQTVITK	9	Unmodified	_SVGQTVITK_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7740478515625	2	466.7742	931.533846	0.055528	2.5919E-05	-0.32523	-0.00015181	-0.2697	-0.00012589	466.77398990604377	22.321	0.11739	22.321	22.25	22.368	0					6	3	2	0	0	0	0.13109	1	6283	6283		72.243	21.051	1	329050			40479	2468	27139	27246	40995	40995					0.06534054068936257
SVGQTVITK	9	Unmodified	_SVGQTVITK_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7740783691406	2	466.7742	931.533846	0.40339	0.00018829	-0.71846	-0.00033536	-0.31507	-0.00014707	466.7738456360686	22.65	0.2155	22.65	22.561	22.777	0					13	5	4	0	0	0	0.073657	1	7378	7378		86.882	18.035	1	2105000			40480	2468	27139	27246	40996	40996					0.06534054068936257
SVGQTVITK	9	Unmodified	_SVGQTVITK_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7740173339844	2	466.7742	931.533846	-0.13335	-6.2245E-05	-0.25589	-0.00011944	-0.38925	-0.00018169	466.7741021066068	22.526	0.21051	22.526	22.417	22.628	0					9	4	3	0	0	0	0.073657	1	7646	7646		86.882	18.397	1	1269300			40481	2468	27139	27246	40997	40997					0.06534054068936257
SVGQTVITK	9	Unmodified	_SVGQTVITK_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7740783691406	2	466.7742	931.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.417	1	22.417	21.917	22.917	0								0	0	0	0.069826	1	6674	6674		80.455	18.347	1				40482	2468	27139	27246	40998	40998					0.06534054068936257
SVGQTVITK	9	Unmodified	_SVGQTVITK_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7738037109375	2	466.7742	931.533846	-0.67011	-0.00031279	-0.10977	-5.1237E-05	-0.77988	-0.00036403	466.7742037780554	22.381	0.15418	22.381	22.333	22.488	0					7	3	3	0	0	0	0.13726	1	6667	6667		70.816	7.2824	1	257200			40483	2468	27139	27246	40999	40999					0.06534054068936257
SVGQTVITK	9	Unmodified	_SVGQTVITK_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7740173339844	2	466.7742	931.533846	0.63647	0.00029709	-0.91696	-0.00042801	-0.28049	-0.00013093	466.77375434309954	22.53	0.21707	22.53	22.421	22.638	0					9	4	3	0	0	0	0.026656	1	7517	7517		112.3	24.118	1	1317300			40484	2468	27139	27246	41000	41000					0.06534054068936257
SVGSAIWNR	9	Unmodified	_SVGSAIWNR_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2644958496094	2	495.261791	988.509028	2.8337	0.0014034	-2.3811	-0.0011793	0.45254	0.00022413	495.2607530029035	33.522	0.55207	33.522	33.215	33.767	0					30	11	4	0	0	0	0.078509	1	12669	12669		85.161	25.043	1	971030			40485	3370	27140	27247	41001	41001					0.014314189862147941
SVGSASSVK	9	Unmodified	_SVGSASSVK_					0	0	0		ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	411.22137451171875	2	411.2218	820.429047	3.4263	0.001409	-3.9097	-0.0016077	-0.48335	-0.00019876	411.2200158345567	15.589	0.12572	15.589	15.494	15.619	0					7	4	2	0	0	0	0.1424	1	3575	3575		69.628	25.511	1	59344			40486	4644	27141	27248	41002	41002					0.011649325923826837
SVGSASSVK	9	Unmodified	_SVGSASSVK_					0	0	0		ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.2215270996094	2	411.2218	820.429047	0.056657	2.3299E-05	-0.67212	-0.00027639	-0.61546	-0.00025309	411.22144945232094	15.795	0.25957	15.795	15.686	15.946	0					10	5	3	0	0	0	0.003936	1	4399	4399		163.15	58.404	1	930590			40487	4644	27141	27248	41003	41003					0.011649325923826837
SVGSASSVK	9	Unmodified	_SVGSASSVK_					0	0	0		ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.22222900390625	2	411.2218	820.429047	0.11242	4.6228E-05	-1.4179	-0.00058309	-1.3055	-0.00053686	411.22117721492464	15.587	0.12051	15.587	15.519	15.639	0					6	4	2	0	0	0	0.39215	1	3532	3532		42.396	13.247	1	65509			40488	4644	27141	27248	41004	41004					0.011649325923826837
SVGSASSVK	9	Unmodified	_SVGSASSVK_					0	0	0		ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.2216796875	2	411.2218	820.429047	-0.46492	-0.00019118	-0.17688	-7.2739E-05	-0.6418	-0.00026392	411.2216636694117	15.806	0.21547	15.806	15.698	15.913	0					6	4	2	0	0	0	0.078509	1	4257	4257		85.161	23.053	1	719910			40489	4644	27141	27248	41005	41005					0.011649325923826837
SVGSAWPLSL	10	Unmodified	_SVGSAWPLSL_					0	0	0			REV__ENST00000530235.1_1_11:66406260-66406308:+|nuORF	REV__ENST00000530235.1_1_11:66406260-66406308:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.77294921875	2	508.7742	1015.53385	-0.022713	-1.1556E-05	-1.8313	-0.00093169	-1.854	-0.00094325	508.77360425976684	35.575	0.22691	35.575	35.445	35.672	0					9	6	2	0	0	0	0.55603	1	13356	13356		39.253	2.0937	1	98571	+		40490	20043	27142	27249	41006	41006					0.02670054068948957
SVGSIVLQN	9	Unmodified	_SVGSIVLQN_					0	0	0			REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.758544921875	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.72	1	21.72	21.22	22.22	0								0	0	0	0.2591	1	6346	6346		42.396	1.618	1		+		40491	21992	27143	27250	41007	41007					0.041414810348555875
SVGSLFVKK	9	Unmodified	_SVGSLFVKK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1;SLC35G1|p.S209Kfs*34|1|0.05|ENSG00000176273|chr10:93901016-93901017|-/AAGCATAG|frameshift_variant;SLC35G1|p.V92Cfs*7|2|0.27|ENSG00000176273|chr10:93898660-93898660|A/-|frameshift_variant	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7945556640625	2	482.794935	963.575317	0.065461	3.1604E-05	-0.51862	-0.00025039	-0.45315	-0.00021878	482.7946152441	27.031	0.22223	27.031	26.932	27.154	0					11	7	2	0	0	0	0.0406	1	8282	8282		98.629	35.323	1	158220			40492	6601	27144	27251	41008	41008					0.09207234828272703
SVGSLFVKK	9	Unmodified	_SVGSLFVKK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1;SLC35G1|p.S209Kfs*34|1|0.05|ENSG00000176273|chr10:93901016-93901017|-/AAGCATAG|frameshift_variant;SLC35G1|p.V92Cfs*7|2|0.27|ENSG00000176273|chr10:93898660-93898660|A/-|frameshift_variant	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.79461669921875	2	482.794935	963.575317	-0.13007	-6.2795E-05	-0.46136	-0.00022274	-0.59142	-0.00028554	482.7946944463889	27.291	0.30443	27.291	27.196	27.501	0					21	7	4	0	0	0	0.013878	1	9519	9519		132.76	55.44	1	1592000			40493	6601	27144	27251	41009	41009					0.09207234828272703
SVGSLFVKK	9	Unmodified	_SVGSLFVKK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1;SLC35G1|p.S209Kfs*34|1|0.05|ENSG00000176273|chr10:93901016-93901017|-/AAGCATAG|frameshift_variant;SLC35G1|p.V92Cfs*7|2|0.27|ENSG00000176273|chr10:93898660-93898660|A/-|frameshift_variant	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7950134277344	2	482.794935	963.575317	-0.5084	-0.00024545	0.25268	0.00012199	-0.25572	-0.00012346	482.7949062588855	27.045	0.18608	27.045	26.979	27.165	0					9	6	2	0	0	0	0.14603	1	8565	8565		68.787	15.435	1	193810			40494	6601	27144	27251	41010	41010					0.09207234828272703
SVGSLFVKK	9	Unmodified	_SVGSLFVKK_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1;SLC35G1|p.S209Kfs*34|1|0.05|ENSG00000176273|chr10:93901016-93901017|-/AAGCATAG|frameshift_variant;SLC35G1|p.V92Cfs*7|2|0.27|ENSG00000176273|chr10:93898660-93898660|A/-|frameshift_variant	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.79461669921875	2	482.794935	963.575317	-0.58041	-0.00028022	0.2093	0.00010105	-0.37111	-0.00017917	482.79500658845285	27.296	0.41507	27.296	27.186	27.601	0					15	8	3	0	0	0	0.0059092	1	9864	9864		154.12	77.344	1	1536900			40495	6601	27144	27251	41011	41011					0.09207234828272703
SVGSPQVLQ	9	Unmodified	_SVGSPQVLQ_					0	0	0			REV__ENST00000566132.5_1_15:75192466-75194403:-|nuORF	REV__ENST00000566132.5_1_15:75192466-75194403:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.74981689453125	2	457.750724	913.486896	-0.40265	-0.00018431	-0.2533	-0.00011595	-0.65596	-0.00030026	457.75063903898075	14.302	0.58107	14.302	13.844	14.425	0					51	27	3	0	0	0	0.19605	1	2829	2829		62.107	0	1	418510	+		40496	20341	27145	27252	41012	41012					0.026691945178072274
SVGSVITKK	9	Unmodified	_SVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7842712402344	2	459.784567	917.554582	-0.43025	-0.00019782	-0.35977	-0.00016541	-0.79001	-0.00036323	459.78439092077286	18.864	0.38659	18.864	18.747	19.133	0					24	11	5	0	0	0	0.0030642	1	4756	4756		168.26	80.562	1	8208700			40497	1564	27146	27253	41013	41013					0.09250644448604817
SVGSVITKK	9	Unmodified	_SVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.78411865234375	2	459.784567	917.554582	-0.67665	-0.00031111	-0.21039	-9.6735E-05	-0.88704	-0.00040785	459.78445975513046	19.206	0.84854	19.206	19.071	19.92	0					39	19	5	0	0	0	1.3754E-05	1	5739	5739		204.62	106	1	30409000			40498	1564	27146	27253	41014	41014					0.09250644448604817
SVGSVITKK	9	Unmodified	_SVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7843017578125	2	459.784567	917.554582	-1.1347	-0.00052172	0.80909	0.00037201	-0.32562	-0.00014972	459.78488443785517	18.853	0.15113	18.853	18.785	18.936	0					12	4	4	0	0	0	0.0097668	1	4992	4992		141.52	51.151	1	2097200			40499	1564	27146	27253	41015	41015					0.09250644448604817
SVGSVITKK	9	Unmodified	_SVGSVITKK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.78448486328125	2	459.784567	917.554582	-0.78348	-0.00036023	0.54135	0.0002489	-0.24213	-0.00011133	459.7848608845959	19.106	0.41181	19.106	19.001	19.412	0					20	8	4	0	0	0	5.4275E-05	1	5970	5970		195.05	88.039	1	16427000			40500	1564	27146	27253	41016	41016					0.09250644448604817
SVGTEMIITK	10	Unmodified	_SVGTEMIITK_					0	0	0		TBX6|p.A116Sfs*55|1|0.39|ENSG00000149922|chr16:30090765-30090766|-/T|frameshift_variant;nc|ENSG00000149922|O95947-2|TBX6;ENSG00000149922|ENST00000395224|TBX6	TBX6|p.A116Sfs*55|1|0.39|ENSG00000149922|chr16:30090765-30090766|-/T|frameshift_variant	TBX6|p.A116Sfs*55|1|0.39|ENSG00000149922|chr16:30090765-30090766|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7942504882812	2	539.794275	1077.574	1.9592	0.0010576	-1.7854	-0.00096377	0.17378	9.3807E-05	539.7935355843872	32.672	0.21487	32.672	32.583	32.798	0					14	5	3	0	0	0	0.14893	1	12029	12029		86.882	14.002	1	395430			40501	4910	27147	27254	41017	41017					0.03831232677202934
SVGTLVHVGA	10	Unmodified	_SVGTLVHVGA_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.7655944824219	2	470.266542	938.51853	-1.2671	-0.00059588	0.38469	0.00018091	-0.88243	-0.00041498	470.2669129763315	17.445	0.22705	17.445	17.278	17.505	0					14	8	2	0	0	0	0.44469	1	4337	4337		51.335	15.717	1	249990	+		40502	19776	27148	27255	41018	41018					0.0468118727176261
SVGTLVHVGA	10	Unmodified	_SVGTLVHVGA_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.2665100097656	2	470.266542	938.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.393	1	17.393	16.893	17.893	0								0	0	0	0.35368	1	4327	4327		42.396	9.5837	1		+		40503	19776	27148	27255	41019	41019					0.0468118727176261
SVGVSSGKL	9	Unmodified	_SVGVSSGKL_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.23980712890625	2	417.239993	832.465432	1.0558	0.00044053	-1.1038	-0.00046054	-0.047957	-2.001E-05	417.2394475011209	19.749	0.50969	19.749	19.569	20.078	0					17	11	3	0	0	0	0.35021	1	6028	6028		45.972	14.017	1	229420			40504	5185	27149	27256	41020	41020					0.04249809489101608
SVHAEGLAPL	10	Unmodified	_SVHAEGLAPL_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	331.8502502441406	3	331.850308	992.529095	0.52306	0.00017358	-0.5887	-0.00019536	-0.065638	-2.1782E-05	331.85006635452515	24.729	0.22309	24.729	24.602	24.825	0					15	5	4	0	0	0	0.58896	1	8350	8350		47.96	1.9873	1	659420	+		40505	13166	27150	27257	41021	41021					0.032531699261767244
SVHDTVAQK	9	Unmodified	_SVHDTVAQK_					0	0	0		MPP7|p.I139*|1|0.24|ENSG00000150054|chr10:28131592-28131592|T/-|frameshift_variant;ENSG00000150054|ENST00000683449|MPP7	MPP7|p.I139*|1|0.24|ENSG00000150054|chr10:28131592-28131592|T/-|frameshift_variant	MPP7|p.I139*|1|0.24|ENSG00000150054|chr10:28131592-28131592|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.75958251953125	2	492.759081	983.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.53	1	14.53	14.03	15.03	0								0	0	0	0.12601	1	3092	3092		65.465	16.024	1				40506	4918	27151	27258	41022	41022					0.011196954037586693
SVHKFSAAAP	10	Unmodified	_SVHKFSAAAP_					0	0	0			REV__ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	REV__ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.8503723144531	3	338.85042	1013.52943	0.51304	0.00017384	-0.79146	-0.00026819	-0.27842	-9.4344E-05	338.8501363626065	24.528	0.48503	24.528	24.34	24.825	0					19	11	2	0	0	0	0.65213	1	8259	8259		32.751	7.6245	1	1632800	+		40507	12246	27152	27259	41023	41023					0.02320589646035387
SVHLRRNQ	8	Unmodified	_SVHLRRNQ_					0	0	0			REV__PNPLA4|p.R110dup|1|0.44|ENSG00000006757|chrX:7921792-7921793|-/GTC|inframe_insertion	REV__PNPLA4|p.R110dup|1|0.44|ENSG00000006757|chrX:7921792-7921793|-/GTC|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.1940612792969	3	337.19318	1008.55771	3.0159	0.0010169	-0.5268	-0.00017763	2.4891	0.0008393	337.19299034149367	14.534	1.1207	14.534	14.324	15.445	0					56	22	4	0	0	0	0.64144	1	3626	3626		42.396	1.618	1	39515000	+		40508	21394	27153	27260	41024	41024					0.05377332345983632
SVHNFFNL	8	Unmodified	_SVHNFFNL_					0	0	0		RB1|p.K130N|1|0.09|ENSG00000139687|chr13:48345089-48345089|A/C|missense_variant	RB1|p.K130N|1|0.09|ENSG00000139687|chr13:48345089-48345089|A/C|missense_variant	RB1|p.K130N|1|0.09|ENSG00000139687|chr13:48345089-48345089|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.245361328125	2	489.245609	976.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.606	1	43.606	43.106	44.106	0								0	0	0	1.7419	1	17454	17454		42.396	1.8235	1				40509	12003	27154	27261	41025	41025					-0.012513684167629435
SVHRSHPLA	9	Unmodified	_SVHRSHPLA_					0	0	0		ENST00000358377.6_2_14:73425600-73425693:+|nuORF	ENST00000358377.6_2_14:73425600-73425693:+|nuORF	ENST00000358377.6_2_14:73425600-73425693:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.185302734375	3	335.185914	1002.53591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.711	1	14.711	14.211	15.211	0								0	0	0	0.30504	1	3234	3234		34.173	0.25091	1				40510	8833	27155	27262	41026	41026					0.034745275974159995
SVIAERNKK	9	Unmodified	_SVIAERNKK_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.8121948242188	2	522.811648	1043.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.86	1	13.86	13.36	14.36	0								0	0	0	0.36056	1	2772	2772		22.58	0.61977	1				40511	1058	27156	27263	41027	41027					0.08868236600164892
SVIAERNKK	9	Unmodified	_SVIAERNKK_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.812255859375	2	522.811648	1043.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.111	1	14.111	13.611	14.611	0								0	0	0	0.14881	1	3589	3589		60.118	1.3363	1				40512	1058	27156	27263	41028	41028					0.08868236600164892
SVIALFLIQ	9	Unmodified	_SVIALFLIQ_					0	0	0		ENST00000310528.8_1_13:53262132-53262462:+|nuORF	ENST00000310528.8_1_13:53262132-53262462:+|nuORF	ENST00000310528.8_1_13:53262132-53262462:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.31378173828125	2	502.312961	1002.61137	0.71023	0.00035676	0.2237	0.00011236	0.93393	0.00046912	502.8145544753437	44.835	0.62202	44.835	44.603	45.225	0					67	37	2	0	0	0	0.38666	2	16723	16723;16816		44.117	6.9577	1	147430			40513	8548	27157	27264	41029;41030	41029					0.11016692005136974
SVIALFLIQ	9	Unmodified	_SVIALFLIQ_					0	0	0		ENST00000310528.8_1_13:53262132-53262462:+|nuORF	ENST00000310528.8_1_13:53262132-53262462:+|nuORF	ENST00000310528.8_1_13:53262132-53262462:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.31280517578125	2	502.312961	1002.61137	0.97789	0.00049121	-0.30923	-0.00015533	0.66866	0.00033587	502.312639646363	44.864	0.77239	44.864	44.567	45.339	0					87	44	3	0	0	0	0.30841	1	17442	17442		51.335	7.2187	1	342540			40514	8548	27157	27264	41031	41031					0.11016692005136974
SVIDDRLKEK	10	Unmodified	_SVIDDRLKEK_					0	0	0		ENST00000561658.5_1_16:67486328-67515058:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.8408203125	2	601.840602	1201.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.195	1	23.195	22.695	23.695	0								0	0	0	0.19118	1	7645	7645		61.691	14.034	1				40515	5329	27158	27265	41032	41032					0.07388453734938594
SVIDDRLKEK	10	Unmodified	_SVIDDRLKEK_					0	0	0		ENST00000561658.5_1_16:67486328-67515058:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.5627746582031	3	401.562827	1201.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.092	1	23.092	22.592	23.592	0								0	0	0	0.37702	1	7908	7908		37.508	1.1905	1				40516	5329	27158	27265	41033	41033					0.07388453734938594
SVIDDRLKEK	10	Unmodified	_SVIDDRLKEK_					0	0	0		ENST00000561658.5_1_16:67486328-67515058:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.8411865234375	2	601.840602	1201.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.116	1	23.116	22.616	23.616	0								0	0	0	0.38024	1	7920	7920		46.457	17.307	1				40517	5329	27158	27265	41034	41034					0.07388453734938594
SVIDDRLKEK	10	Unmodified	_SVIDDRLKEK_					0	0	0		ENST00000561658.5_1_16:67486328-67515058:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	ENST00000561658.5_1_16:67486328-67515058:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.8409423828125	2	601.840602	1201.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.968	1	22.968	22.468	23.468	0								0	0	0	0.38689	1	6932	6932		43.651	21.965	1				40518	5329	27158	27265	41035	41035					0.07388453734938594
SVIDGNLEL	9	Unmodified	_SVIDGNLEL_					0	0	0		ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2552185058594	2	480.25584	958.497126	-0.64521	-0.00030987	0.2912	0.00013985	-0.35401	-0.00017001	480.2559794185319	31.533	0.51553	31.533	31.319	31.835	0					30	10	4	0	0	0	0.41113	1	11737	11737		40.778	6.6056	1	1822000			40519	7561	27159	27266	41036	41036					0.016217574523693656
SVIDRKDLIIK	11	Unmodified	_SVIDRKDLIIK_					0	0	0		nc|ENSG00000170085|Q8NDZ2-4|SIMC1;nc|ENSG00000170085|Q8NDZ2-3|SIMC1;nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1	nc|ENSG00000170085|Q8NDZ2-4|SIMC1	nc|ENSG00000170085|Q8NDZ2-4|SIMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.937744140625	3	433.938005	1298.79219	0.70368	0.00030535	-1.3462	-0.00058415	-0.64248	-0.0002788	433.9375237483835	30.528	0.3089	30.528	30.445	30.754	0					14	7	3	0	0	0	0.63225	1	11029	11029		34.087	0	1	323710			40520	6207	27160	27267	41037	41037					0.15474165591172095
SVIDRKDLIIK	11	Unmodified	_SVIDRKDLIIK_					0	0	0		nc|ENSG00000170085|Q8NDZ2-4|SIMC1;nc|ENSG00000170085|Q8NDZ2-3|SIMC1;nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1	nc|ENSG00000170085|Q8NDZ2-4|SIMC1	nc|ENSG00000170085|Q8NDZ2-4|SIMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.9377746582031	3	433.938005	1298.79219	0.84726	0.00036766	-2.4046	-0.0010434	-1.5573	-0.00067578	433.9374290212686	30.482	0.7496	30.482	30.376	31.126	0					28	15	3	0	0	0	0.36734	1	11303	11303		55.084	11.433	1	976160			40521	6207	27160	27267	41038	41038					0.15474165591172095
SVIDSVTKK	9	Unmodified	_SVIDSVTKK_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	326.1937561035156	3	326.193963	975.560061	0.38959	0.00012708	-0.61337	-0.00020008	-0.22379	-7.2998E-05	326.1936531584914	23.771	0.16709	23.771	23.663	23.83	0					5	3	2	0	0	0	0.60749	1	8247	8247		28.081	15.875	1	175940			40522	4990	27161	27268	41039	41039					0.07130323240426151
SVIDTSTIVRK	11	Unmodified	_SVIDTSTIVRK_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;ENST00000495595.1_1_2:37111179-37129881:-|nuORF;STRN|p.V346*|1|0.24|ENSG00000115808|chr2:36886722-36886722|C/-|frameshift_variant	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.85595703125	2	609.856252	1217.69795	0.15807	9.64E-05	-0.80717	-0.00049226	-0.6491	-0.00039586	609.8557141790972	28.819	0.20267	28.819	28.746	28.949	0					13	6	3	0	0	0	0.022049	1	9023	9023		133.99	77.56	1	290520			40523	2936	27162	27269	41040	41040					0.09781026769042
SVIDTSTIVRK	11	Unmodified	_SVIDTSTIVRK_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;ENST00000495595.1_1_2:37111179-37129881:-|nuORF;STRN|p.V346*|1|0.24|ENSG00000115808|chr2:36886722-36886722|C/-|frameshift_variant	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.9068908691406	3	406.906594	1217.69795	-0.12413	-5.0508E-05	-0.28064	-0.00011419	-0.40476	-0.0001647	406.90658601835145	28.819	0.18898	28.819	28.723	28.912	0					11	6	2	0	0	0	0.78372	1	9027	9027		18.531	0.69791	1	203180			40524	2936	27162	27269	41041	41041					0.09781026769042
SVIDTSTIVRK	11	Unmodified	_SVIDTSTIVRK_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;ENST00000495595.1_1_2:37111179-37129881:-|nuORF;STRN|p.V346*|1|0.24|ENSG00000115808|chr2:36886722-36886722|C/-|frameshift_variant	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.8563232421875	2	609.856252	1217.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.829	1	28.829	28.329	29.329	0								0	0	0	0.11201	1	9332	9332		74.165	37.718	1				40525	2936	27162	27269	41042	41042					0.09781026769042
SVIDTSTIVRK	11	Unmodified	_SVIDTSTIVRK_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;ENST00000495595.1_1_2:37111179-37129881:-|nuORF;STRN|p.V346*|1|0.24|ENSG00000115808|chr2:36886722-36886722|C/-|frameshift_variant	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.8564453125	2	609.856252	1217.69795	0.49589	0.00030242	0.041254	2.5159E-05	0.53715	0.00032758	609.8562102170262	29.052	0.15487	29.052	28.991	29.146	0					8	3	3	0	0	0	0.013225	1	10721	10721		106.88	66.822	1	424520			40526	2936	27162	27269	41043	41043					0.09781026769042
SVIDTSTIVRK	11	Unmodified	_SVIDTSTIVRK_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;ENST00000495595.1_1_2:37111179-37129881:-|nuORF;STRN|p.V346*|1|0.24|ENSG00000115808|chr2:36886722-36886722|C/-|frameshift_variant	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	609.8561401367188	2	609.856252	1217.69795	-1.9653	-0.0011986	2.1111	0.0012875	0.14575	8.8886E-05	609.8573226055515	28.875	0.18629	28.875	28.78	28.967	0					9	4	3	0	0	0	0.10814	1	9648	9648		79.489	47.959	1	344030			40527	2936	27162	27269	41044	41044					0.09781026769042
SVIEAGHY	8	Unmodified	_SVIEAGHY_					0	0	0			REV__nc|nan|Q5JPI3-2|C3orf38	REV__nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2164306640625	2	438.216517	874.418482	-0.96615	-0.00042338	0.61678	0.00027028	-0.34937	-0.0001531	438.2166958166541	24.602	0.21298	24.602	24.526	24.739	0					14	7	3	0	0	0	0.7126	1	7540	7540		31.955	0	1	311760	+		40528	16759	27163	27270	41045	41045					-0.02375050062050832
SVIEEGDCK	9	Unmodified	_SVIEEGDCK_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2247009277344	2	490.223682	978.432811	-0.070036	-3.4333E-05	1.7187	0.00084257	1.6487	0.00080823	490.22506427376237	23.07	0.16732	23.07	23.012	23.179	0					6	3	2	0	0	0	0.38666	1	7911	7911		42.864	0.46813	1	169410			40529	2084	27164	27271	41046	41046					-0.057267656960675595
SVIEKLAKK	9	Unmodified	_SVIEKLAKK_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.2218017578125	3	339.221853	1014.64373	0.36813	0.00012488	-0.34617	-0.00011743	0.021961	7.4497E-06	339.2216501878495	21.244	0.11401	21.244	21.176	21.29	0					6	2	3	0	0	0	0.24334	1	7024	7024		56.434	5.0983	1	107710			40530	6046	27165	27272	41047	41047					0.1369947940812608
SVIEKLAKK	9	Unmodified	_SVIEKLAKK_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.2218322753906	3	339.221853	1014.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.272	1	21.272	20.772	21.772	0								0	0	0	0.20989	1	6899	6899		49.536	10.283	1				40531	6046	27165	27272	41048	41048					0.1369947940812608
SVIELHRNK	9	Unmodified	_SVIELHRNK_					0	0	0		SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.3199462890625	2	548.317097	1094.61964	0.2982	0.00016351	2.9715	0.0016293	3.2697	0.0017928	548.3189067071016	19.305	0.11628	19.305	19.247	19.363	0					4	2	2	0	0	0	0.098791	1	6095	6095		79.713	28.52	1	208170			40532	2476	27166	27273	41049	41049					0.07611638974458401
SVIELTCTK	9	Unmodified	_SVIELTCTK_					0	0	0		IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.A2088T|1|0.28|ENSG00000197081|chr6:160088089-160088089|G/A|missense_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.26727294921875	2	497.267893	992.521233	-0.028974	-1.4408E-05	-0.24264	-0.00012066	-0.27162	-0.00013507	497.26775421073467	33.708	0.31728	33.708	33.618	33.935	0					12	8	2	0	0	0	0.24334	1	12946	12946		56.434	14.038	1	59461			40533	7424	27167	27274	41050	41050					0.02467274614400594
SVIELTCTK	9	Unmodified	_SVIELTCTK_					0	0	0		IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.A2088T|1|0.28|ENSG00000197081|chr6:160088089-160088089|G/A|missense_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2678527832031	2	497.267893	992.521233	-0.70552	-0.00035083	0.4321	0.00021487	-0.27343	-0.00013597	497.26819964652265	33.659	0.24342	33.659	33.549	33.793	0					11	5	3	0	0	0	0.3269	1	12829	12829		47.96	10.8	1	196710			40534	7424	27167	27274	41051	41051					0.02467274614400594
SVIENAKKK	9	Unmodified	_SVIENAKKK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86385703-86389088:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.80767822265625	2	508.808574	1015.60259	-0.10263	-5.2219E-05	-0.42146	-0.00021444	-0.52409	-0.00026666	508.80826106953725	14.199	0.095759	14.199	14.134	14.229	0					10	4	3	0	0	0	0.11898	1	2879	2879		75.043	20.267	1	203330			40535	3774	27168	27275	41052	41052					0.09541718368654983
SVIENAKKK	9	Unmodified	_SVIENAKKK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86385703-86389088:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.8082275390625	2	508.808574	1015.60259	-0.021522	-1.0951E-05	-0.52322	-0.00026622	-0.54474	-0.00027717	508.80825811353856	14.522	0.24817	14.522	14.406	14.655	0					13	6	4	0	0	0	0.0080613	1	3544	3544		145.16	29.662	1	1072100			40536	3774	27168	27275	41053	41053					0.09541718368654983
SVIENAKKK	9	Unmodified	_SVIENAKKK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86385703-86389088:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8080749511719	2	508.808574	1015.60259	-0.43636	-0.00022202	0.20907	0.00010638	-0.22729	-0.00011565	508.80865278846886	14.206	0.067337	14.206	14.154	14.221	0					6	3	2	0	0	0	0.047412	1	3028	3028		96.19	27.404	1	220570			40537	3774	27168	27275	41054	41054					0.09541718368654983
SVIENAKKK	9	Unmodified	_SVIENAKKK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86385703-86389088:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.80853271484375	2	508.808574	1015.60259	-0.39757	-0.00020229	0.52063	0.0002649	0.12305	6.261E-05	508.8087453924261	14.488	0.14604	14.488	14.393	14.539	0					8	3	3	0	0	0	0.026538	1	3775	3775		112.41	19.268	1	1117700			40538	3774	27168	27275	41055	41055					0.09541718368654983
SVIGLQMGTNK	11	Unmodified	_SVIGLQMGTNK_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	574.3117065429688	2	574.310623	1146.60669	1.0501	0.0006031	0.55584	0.00031923	1.606	0.00092233	574.311213329579	34.157	0.064247	34.157	34.132	34.197	0					4	2	2	0	0	0	0.35653	1	11158	11158		54.343	4.8073	1	57169			40539	3043	27169	27276	41056	41056					0.03925439800082131
SVIGLQMGTNK	11	Unmodified	_SVIGLQMGTNK_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.3106689453125	2	574.310623	1146.60669	-0.17392	-9.9882E-05	0.7459	0.00042838	0.57198	0.0003285	574.3108840449239	34.407	0.1717	34.407	34.358	34.53	0					9	4	3	0	0	0	0.061242	1	13267	13267		100.82	64.372	1	164320			40540	3043	27169	27276	41057	41057					0.03925439800082131
SVIGMRKLAML	11	Unmodified	_SVIGMRKLAML_					0	0	0			REV__ENST00000464101.2_1_3:132379321-132384968:+|nuORF	REV__ENST00000464101.2_1_3:132379321-132384968:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.9065246582031	3	406.906883	1217.69882	-0.54905	-0.00022341	-0.27865	-0.00011338	-0.8277	-0.0003368	406.90675885798294	29.082	0.32798	29.082	28.957	29.285	0					23	8	4	0	0	0	0.72624	1	10333	10333		25.126	25.126	1	2612300	+		40541	13306	27170	27277	41058	41058					0.09867826612753561
SVIGPQQQFL	10	Unmodified	_SVIGPQQQFL_					0	0	0		nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-5|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.8023681640625	2	558.806031	1115.59751	-0.13023	-7.2775E-05	-4.4132	-0.0024661	-4.5434	-0.0025389	558.802058571772	29.591	0.20984	29.591	29.49	29.7	0					5	4	2	0	0	0	0.63224	1	10985	10985		30.318	0	1	97134			40542	1659	27171	27278	41059	41059					0.04433414506047484
SVIGVFITK	9	Unmodified	_SVIGVFITK_					0	0	0		SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant;ENSG00000185052|ENST00000328041|SLC24A3	SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant	SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.29718017578125	2	482.29731	962.580068	-0.10286	-4.9607E-05	0.13599	6.5587E-05	0.033134	1.598E-05	482.297015008208	43.087	0.13184	43.087	43.022	43.153	0					9	6	2	0	0	0	0.25761	1	16290	16290		54.722	13.944	1	63353			40543	7061	27172	27279	41060	41060					0.09728118971020194
SVIGVFITK	9	Unmodified	_SVIGVFITK_					0	0	0		SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant;ENSG00000185052|ENST00000328041|SLC24A3	SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant	SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.29718017578125	2	482.29731	962.580068	0.68957	0.00033258	-0.37707	-0.00018186	0.3125	0.00015072	482.29705425616925	43.093	0.22163	43.093	42.994	43.216	0					22	10	3	0	0	0	0.34452	1	16861	16861		46.457	9.2977	1	165930			40544	7061	27172	27279	41061	41061					0.09728118971020194
SVIGVFITK	9	Unmodified	_SVIGVFITK_					0	0	0		SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant;ENSG00000185052|ENST00000328041|SLC24A3	SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant	SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2972412109375	2	482.29731	962.580068	0.89655	0.0004324	-1.284	-0.00061927	-0.38746	-0.00018687	482.2965653523182	43.026	0.26059	43.026	42.928	43.189	0					16	7	3	0	0	0	0.28897	1	17180	17180		51.193	13.381	1	433220			40545	7061	27172	27279	41062	41062					0.09728118971020194
SVIIPIKKL	9	Unmodified	_SVIIPIKKL_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.85223388671875	2	505.852253	1009.68995	-0.044109	-2.2312E-05	-0.21459	-0.00010855	-0.2587	-0.00013086	505.8520955907186	36.118	0.546	36.118	35.739	36.285	0					46	14	4	0	0	0	0.3269	1	13520	13520		49.442	13.823	1	1335100			40546	6236	27173	27280	41063	41063					0.18549544310224064
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2957458496094	2	488.295299	974.576045	-0.080418	-3.9268E-05	0.74944	0.00036595	0.66903	0.00032668	488.29576070915743	18.212	0.085819	18.212	18.161	18.246	0					9	3	3	0	0	0	0.014413	1	4496	4496		131.62	38.421	1	257370			40547	3258	27174	27281	41064	41064					0.087740294773198
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2951965332031	2	488.295299	974.576045	0.75369	0.00036802	-0.94535	-0.00046161	-0.19166	-9.3587E-05	488.2948130333756	18.522	0.18145	18.522	18.431	18.612	0					10	4	4	0	0	0	5.5375E-08	1	5444	5444		209.21	87.034	1	2365300			40548	3258	27174	27281	41065	41065					0.087740294773198
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.79644775390625	2	488.295299	974.576045	-1.2481	-0.00060945	0.63724	0.00031116	-0.61088	-0.00029829	488.29551855218295	18.225	0.11542	18.225	18.15	18.265	0					6	4	2	0	0	0	0.47473	1	4723	4723		35.152	35.152	1	70652			40549	3258	27174	27281	41066	41066					0.087740294773198
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2950744628906	2	488.295299	974.576045	-0.07923	-3.8688E-05	-0.42759	-0.00020879	-0.50682	-0.00024748	488.295036560224	18.468	0.11671	18.468	18.411	18.527	0					8	2	4	0	0	0	0.010427	1	5683	5683		140.11	46.917	1	1162200			40550	3258	27174	27281	41067	41067					0.087740294773198
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.29541015625	2	488.295299	974.576045	0.49976	0.00024403	-0.43557	-0.00021269	0.064191	3.1344E-05	488.29529437793104	18.317	0.08083	18.317	18.246	18.327	0					6	2	3	0	0	0	0.015992	1	4747	4747		128.6	35.407	1	145120			40551	3258	27174	27281	41068	41068					0.087740294773198
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2957458496094	2	488.295299	974.576045	-0.19691	-9.6149E-05	0.86953	0.00042459	0.67263	0.00032844	488.2957565261405	18.307	0.15151	18.307	18.235	18.387	0					8	4	3	0	0	0	0.085655	1	4761	4761		82.75	26.029	1	209490			40552	3258	27174	27281	41069	41069					0.087740294773198
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2950439453125	2	488.295299	974.576045	-0.52243	-0.0002551	-0.15484	-7.561E-05	-0.67727	-0.00033071	488.29515279750865	18.48	0.1678	18.48	18.37	18.538	0					9	3	3	0	0	0	0.0063888	1	5526	5526		152.06	35.157	1	1478700			40553	3258	27174	27281	41070	41070					0.087740294773198
SVIKNVSTK	9	Unmodified	_SVIKNVSTK_					0	0	0		RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.29510498046875	2	488.295299	974.576045	0.79508	0.00038824	-1.2933	-0.00063152	-0.49823	-0.00024328	488.29467456712916	18.463	0.16856	18.463	18.353	18.522	0					5	3	2	0	0	0	0.015992	1	5542	5542		128.6	46.362	1	2562900			40554	3258	27174	27281	41071	41071					0.087740294773198
SVIKTQETK	9	Unmodified	_SVIKTQETK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2985229492188	2	517.298039	1032.58152	0.37221	0.00019254	0.39546	0.00020457	0.76767	0.00039711	517.2981933199932	16.076	0.13209	16.076	15.996	16.128	0					11	5	3	0	0	0	0.003936	1	3595	3595		163.15	59.094	1	243240			40555	11499	27175	27282	41072	41072					0.06653708269118397
SVIKTQETK	9	Unmodified	_SVIKTQETK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.29833984375	2	517.298039	1032.58152	0.044698	2.3122E-05	0.3605	0.00018648	0.4052	0.00020961	517.2981824416988	16.399	0.14842	16.399	16.303	16.451	0					10	3	4	0	0	0	1.8411E-08	1	4425	4425		218.73	60.656	1	1684100			40556	11499	27175	27282	41073	41073					0.06653708269118397
SVIKTQETK	9	Unmodified	_SVIKTQETK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2987060546875	2	517.298039	1032.58152	0.03592	1.8582E-05	0.76511	0.00039579	0.80104	0.00041437	517.2985713330172	16.098	0.091579	16.098	16.045	16.137	0					7	3	3	0	0	0	0.032383	1	3787	3787		106.68	23.933	1	323450			40557	11499	27175	27282	41074	41074					0.06653708269118397
SVIKTQETK	9	Unmodified	_SVIKTQETK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.298095703125	2	517.298039	1032.58152	1.5187	0.00078562	-1.2779	-0.00066107	0.24077	0.00012455	517.2974063183958	16.322	0.1163	16.322	16.263	16.38	0					6	2	3	0	0	0	0.001056	1	4653	4653		182.39	52.97	1	2122500			40558	11499	27175	27282	41075	41075					0.06653708269118397
SVILGHVTAG	10	Unmodified	_SVILGHVTAG_					0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2734069824219	2	477.274367	952.53418	-1.4935	-0.0007128	-1.3025	-0.00062165	-2.796	-0.0013345	477.27375669875664	17.142	0.07066	17.142	17.108	17.179	0					4	2	2	0	0	0	0.42631	1	4249	4249		53.351	7.3995	1	124240	+		40559	17529	27176	27283	41076	41076					0.056014737887949195
SVILPILKK	9	Unmodified	_SVILPILKK_					0	0	0		SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant;ENSG00000187231|ENST00000428443|SESTD1;SESTD1|p.K13Nfs*2|1|0.47|ENSG00000187231|chr2:179191803-179191803|T/-|frameshift_variant;ENST00000486468.1_1_2:180027226-180056568:-|nuORF	SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant	SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.8519592285156	2	505.852253	1009.68995	-0.076774	-3.8836E-05	0.056505	2.8583E-05	-0.020269	-1.0253E-05	505.8521569515268	35.733	0.42997	35.733	35.569	35.999	0					45	21	3	0	0	0	0.48623	1	11686	11686		42.396	13.247	1	156360			40560	7187	27177	27284	41077	41077					0.18549544310224064
SVILPILKK	9	Unmodified	_SVILPILKK_					0	0	0		SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant;ENSG00000187231|ENST00000428443|SESTD1;SESTD1|p.K13Nfs*2|1|0.47|ENSG00000187231|chr2:179191803-179191803|T/-|frameshift_variant;ENST00000486468.1_1_2:180027226-180056568:-|nuORF	SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant	SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.85211181640625	2	505.852253	1009.68995	-0.38934	-0.00019695	0.61896	0.0003131	0.22962	0.00011616	505.8524922768107	36.076	0.55435	36.076	35.73	36.284	0					41	16	3	0	0	0	0.25761	1	13989	13989		66.429	13.078	1	828460			40561	7187	27177	27284	41078	41078					0.18549544310224064
SVINELRKM	9	Unmodified	_SVINELRKM_					0	0	0			REV__ENST00000472260.1_1_2:169713171-169721477:+|nuORF	REV__ENST00000472260.1_1_2:169713171-169721477:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.306396484375	2	545.307884	1088.60121	0.32981	0.00017985	-2.6666	-0.0014541	-2.3368	-0.0012743	545.3065218403541	26.21	0.25833	26.21	26.101	26.359	0					11	5	3	0	0	0	0.33044	1	9363	9363		47.657	1.6851	1	325410	+		40562	15856	27178	27285	41079	41079					0.06045761008226691
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.30023193359375	2	509.300581	1016.58661	-0.10705	-5.4522E-05	-0.22587	-0.00011504	-0.33293	-0.00016956	509.3003978569374	20.593	0.18601	20.593	20.512	20.698	0					15	5	4	0	0	0	0.0051572	1	5542	5542		157.34	43.933	1	1708800			40563	3397	27179	27286	41080	41080					0.07898012131749965
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.86962890625	3	339.86948	1016.58661	3.6636	0.0012451	-3.6206	-0.0012305	0.043026	1.4623E-05	339.86845893479136	20.63	0.11702	20.63	20.563	20.68	0					5	3	2	0	0	0	0.36892	1	5794	5794		68.846	36.034	1	43211			40564	3397	27179	27286	41081	41081					0.07898012131749965
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.3008728027344	2	509.300581	1016.58661	-0.51031	-0.0002599	0.47389	0.00024135	-0.036421	-1.8549E-05	509.300762307192	20.631	0.29883	20.631	20.525	20.823	0					19	9	4	0	0	0	0.0079272	1	5783	5783		145.46	35.631	1	2031900			40565	3397	27179	27286	41082	41082					0.07898012131749965
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.86944580078125	3	339.86948	1016.58661	0.36568	0.00012428	-0.52396	-0.00017808	-0.15828	-5.3794E-05	339.86934321803614	20.839	0.26716	20.839	20.629	20.896	0					9	5	3	0	0	0	0.30841	1	6825	6825		65.157	26.443	1	829950			40566	3397	27179	27286	41083	41083					0.07898012131749965
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.30023193359375	2	509.300581	1016.58661	1.169	0.00059539	-1.5593	-0.00079414	-0.39024	-0.00019875	509.29968399108304	20.822	0.36549	20.822	20.713	21.078	0					17	7	4	0	0	0	0.01077	1	6817	6817		139.38	34.959	1	10092000			40567	3397	27179	27286	41084	41084					0.07898012131749965
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.86956787109375	3	339.86948	1016.58661	0.51679	0.00017564	-0.38658	-0.00013139	0.13021	4.4253E-05	339.86944032056925	20.669	0.11258	20.669	20.612	20.725	0					4	2	2	0	0	0	0.25716	1	5865	5865		80.455	31.853	1	130250			40568	3397	27179	27286	41085	41085					0.07898012131749965
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.8694152832031	3	339.86948	1016.58661	-0.02237	-7.603E-06	0.062359	2.1194E-05	0.039988	1.3591E-05	339.8694733416643	20.848	0.26558	20.848	20.743	21.008	0					15	5	4	0	0	0	0.28897	1	6677	6677		66.962	25.882	1	1184900			40569	3397	27179	27286	41086	41086					0.07898012131749965
SVINNGHNQK	10	Unmodified	_SVINNGHNQK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.7861328125	2	555.786161	1109.55777	-0.45205	-0.00025124	1.0463	0.0005815	0.59421	0.00033026	555.7863767236672	14.169	0.068795	14.169	14.136	14.205	0					5	3	2	0	0	0	0.21577	1	3019	3019		75.043	10.836	1	111820			40570	1698	27180	27287	41087	41087					0.007372875553301128
SVINNGHNQK	10	Unmodified	_SVINNGHNQK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;PDS5B|p.K693Qfs*8|1|0.11|ENSG00000083642|chr13:32710054-32710055|-/T|frameshift_variant;PDS5B|p.G721Dfs*35|1|0.13|ENSG00000083642|chr13:32732132-32732132|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7860107421875	2	555.786161	1109.55777	-0.094076	-5.2286E-05	0.64031	0.00035588	0.54624	0.00030359	555.7864697939577	14.446	0.19044	14.446	14.348	14.539	0					7	4	2	0	0	0	0.019261	1	3737	3737		115.49	58.773	1	1048300			40571	1698	27180	27287	41088	41088					0.007372875553301128
SVINNSHNK	9	Unmodified	_SVINNSHNK_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.7619934082031	2	506.762155	1011.50976	-0.084558	-4.2851E-05	-0.33153	-0.000168	-0.41608	-0.00021086	506.76197918129594	14.052	0.16658	14.052	13.972	14.139	0					25	8	4	0	0	0	0.0073977	1	2828	2828		143.37	50.178	1	612350			40572	3238	27181	27288	41089	41089					0.004462136352799462
SVINNSHNK	9	Unmodified	_SVINNSHNK_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7620849609375	2	506.762155	1011.50976	-0.037167	-1.8835E-05	-0.16145	-8.1815E-05	-0.19861	-0.00010065	506.76220327887904	14.374	0.7705	14.374	14.132	14.902	0					40	19	4	0	0	0	0.0066803	1	3475	3475		146.79	54.595	1	9340100			40573	3238	27181	27288	41090	41090					0.004462136352799462
SVINNSHNK	9	Unmodified	_SVINNSHNK_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.76239013671875	2	506.762155	1011.50976	-0.58529	-0.0002966	0.48198	0.00024425	-0.10331	-5.2353E-05	506.76250169240956	14.065	0.10171	14.065	14.019	14.121	0					16	5	4	0	0	0	0.026656	1	2979	2979		117.81	53.604	1	1391900			40574	3238	27181	27288	41091	41091					0.004462136352799462
SVINNSHNK	9	Unmodified	_SVINNSHNK_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7618713378906	2	506.762155	1011.50976	-0.36741	-0.00018619	-0.28343	-0.00014363	-0.65084	-0.00032982	506.7620890264956	14.309	0.52311	14.309	14.107	14.63	0					28	11	4	0	0	0	0.0019365	1	3691	3691		172.25	118.9	1	7686800			40575	3238	27181	27288	41092	41092					0.004462136352799462
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.3071899414062	2	545.306198	1088.59784	1.7581	0.00095868	0.024288	1.3244E-05	1.7823	0.00097192	545.3062283354287	35.22	0.23941	35.22	35.072	35.311	0					23	11	3	0	0	0	0.43008	1	11514	11514		52.937	24.682	1	106900			40576	2890	27182	27289	41093	41093					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3070678710938	2	545.306198	1088.59784	1.8673	0.0010182	-0.98262	-0.00053583	0.88463	0.0004824	545.3055811622393	35.52	0.53264	35.52	35.268	35.801	0					36	14	4	0	0	0	0.41384	1	13261	13261		54.722	11.858	1	656450			40577	2890	27182	27289	41094	41094					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3072509765625	2	545.306198	1088.59784	0.52406	0.00028577	0.39708	0.00021653	0.92114	0.0005023	545.3064266329147	35.289	0.29095	35.289	35.082	35.373	0					22	13	2	0	0	0	0.2538	1	11929	11929		72.879	28.502	1	137350			40578	2890	27182	27289	41095	41095					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.307861328125	2	545.306198	1088.59784	0.94184	0.00051359	1.3051	0.00071165	2.2469	0.0012252	545.3068614421095	35.468	0.23252	35.468	35.359	35.591	0					11	6	2	0	0	0	0.31613	1	13742	13742		65.465	16.024	1	93584			40579	2890	27182	27289	41096	41096					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.3067016601562	2	545.306198	1088.59784	1.9224	0.0010483	-1.4247	-0.0007769	0.49769	0.00027139	545.3056322950334	35.476	0.43416	35.476	35.281	35.716	0					30	12	3	0	0	0	0.23612	1	13737	13737		75.043	12.936	1	658090			40580	2890	27182	27289	41097	41097					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.7396240234375	2	545.306198	1088.59784	1.111	0.00060581	0.74166	0.00040443	1.8526	0.0010102	545.3064017356562	35.305	0.27378	35.305	35.115	35.388	0					22	9	3	0	0	0	0.34667	2	12517	12517;12541		62.107	12.666	1	124120			40581	2890	27182	27289	41098;41099	41098					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3065795898438	2	545.306198	1088.59784	0.571	0.00031137	0.35112	0.00019147	0.92211	0.00050283	545.3063701710346	35.441	0.47489	35.441	35.179	35.654	0					26	9	4	0	0	0	0.24329	1	13622	13622		74.165	24.629	1	1859600			40582	2890	27182	27289	41100	41100					0.057088342259021374
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.79095458984375	2	495.790184	989.565815	0.052686	2.6121E-05	0.76399	0.00037878	0.81668	0.0004049	495.7905409316494	42.26	0.22786	42.26	42.145	42.373	0					25	14	3	0	0	0	0.063171	1	13445	13445		90.601	35.825	1	142480			40583	4000	27183	27290	41101	41101					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7912292480469	2	495.790184	989.565815	0.73317	0.0003635	-0.71746	-0.00035571	0.015712	7.7898E-06	495.7898210386131	42.536	0.39775	42.536	42.437	42.835	0					46	20	4	0	0	0	0.037924	1	16088	16088		101.25	39.145	1	748080			40584	4000	27183	27290	41102	41102					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.79034423828125	2	495.790184	989.565815	-1.2178	-0.00060378	1.8105	0.00089765	0.59273	0.00029387	495.7911111866808	42.333	0.20375	42.333	42.234	42.438	0					20	12	2	0	0	0	0.063171	1	13956	13956		90.601	38.302	1	101870			40585	4000	27183	27290	41103	41103					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7912902832031	2	495.790184	989.565815	-0.037215	-1.8451E-05	-0.32834	-0.00016279	-0.36556	-0.00018124	495.7901655900634	42.51	0.28688	42.51	42.406	42.693	0					31	14	3	0	0	0	0.017421	1	16663	16663		126.24	56.615	1	315020			40586	4000	27183	27290	41104	41104					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.79071044921875	2	495.790184	989.565815	0.052909	2.6232E-05	0.80005	0.00039666	0.85296	0.00042289	495.79056232130415	42.299	0.1745	42.299	42.237	42.412	0					15	10	2	0	0	0	0.02429	1	14793	14793		114.89	45.267	1	77022			40587	4000	27183	27290	41105	41105					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.79229736328125	2	495.790184	989.565815	0.10667	5.2886E-05	1.1781	0.00058411	1.2848	0.000637	495.79090807110225	42.289	0.19095	42.289	42.215	42.406	0					21	11	2	0	0	0	0.25761	1	14784	14784		54.722	21.229	1	193080			40588	4000	27183	27290	41106	41106					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.79010009765625	2	495.790184	989.565815	-0.67143	-0.00033289	0.2891	0.00014334	-0.38233	-0.00018955	495.79033063704105	42.459	0.37856	42.459	42.347	42.725	0					28	10	4	0	0	0	0.085655	1	16923	16923		82.75	32.726	1	1528300			40589	4000	27183	27290	41107	41107					0.07061466542756989
SVIQEIHQE	9	Unmodified	_SVIQEIHQE_					0	0	0		ENSG00000203942|ENST00000370640|C10orf62	ENSG00000203942|ENST00000370640|C10orf62	ENSG00000203942|ENST00000370640|C10orf62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.5208435058594	3	361.520739	1081.54039	-0.93637	-0.00033852	0.24415	8.8266E-05	-0.69222	-0.00025025	361.52118516329153	15.603	0.087635	15.603	15.523	15.61	0					8	3	3	0	0	0	0.56424	1	3589	3589		25.574	0.44807	1	57665			40590	7662	27184	27291	41108	41108					0.0028794722968541464
SVIQHTNSL	9	Unmodified	_SVIQHTNSL_					0	0	0		HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant;HIVEP2|p.N2325Kfs*44|1|0.35|ENSG00000010818|chr6:142753473-142753474|-/T|frameshift_variant;ENSG00000010818|ENST00000367603|HIVEP2;HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant;ENSG00000095951|ENST00000379388|HIVEP1;HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant	HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant;ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7669677734375	2	499.766906	997.519259	-0.63965	-0.00031967	0.61844	0.00030907	-0.02121	-1.06E-05	499.7671605257104	26.109	0.16755	26.109	26	26.168	0					8	3	3	0	0	0	0.15558	1	9316	9316		66.962	12.186	1	279650			40591	1911;1042	27185	27292	41109	41109					0.020399819208023473
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.5710144042969	3	407.571434	1219.69247	0.98285	0.00040058	-1.4228	-0.00057991	-0.43998	-0.00017933	407.5707427047165	32.751	0.24754	32.751	32.668	32.915	0					10	6	2	0	0	0	0.28675	1	12067	12067		68.846	20.245	1	154920			40592	5377	27186	27293	41110	41110					0.09141347977197256
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.853759765625	2	610.853512	1219.69247	0.88921	0.00054317	-0.33821	-0.00020659	0.551	0.00033658	610.8532658735508	32.769	0.20562	32.769	32.679	32.885	0					12	5	3	0	0	0	0.44109	1	12492	12492		55.084	3.5562	1	301250			40593	5377	27186	27293	41111	41111					0.09141347977197256
SVISGINEK	9	Unmodified	_SVISGINEK_					0	0	0		CYB561A3|p.A169T|1|0.32|ENSG00000162144|chr11:61353028-61353028|C/T|missense_variant;ENST00000546151.5_1_11:61120455-61125280:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3	CYB561A3|p.A169T|1|0.32|ENSG00000162144|chr11:61353028-61353028|C/T|missense_variant	CYB561A3|p.A169T|1|0.32|ENSG00000162144|chr11:61353028-61353028|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.76348876953125	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.074	1	27.074	26.574	27.574	0								0	0	0	0.241	1	9415	9415		45.022	2.1579	1				40594	723	27187	27294	41112	41112					0.03817463689279066
SVISHQHLSK	10	Unmodified	_SVISHQHLSK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.3146362304688	2	568.314554	1134.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.45	1	17.45	16.95	17.95	0								0	0	0	0.094953	1	4162	4162		80.916	19.225	1				40595	5726	27188	27295	41113	41113					0.05263335111840206
SVISHQHLSK	10	Unmodified	_SVISHQHLSK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.3150024414062	2	568.314554	1134.61456	0.13948	7.9267E-05	0.54758	0.0003112	0.68706	0.00039047	568.3149080609768	17.771	0.1701	17.771	17.685	17.855	0					11	4	4	0	0	0	0.0068379	1	5080	5080		159.34	87.458	1	1674400			40596	5726	27188	27295	41114	41114					0.05263335111840206
SVISHQHLSK	10	Unmodified	_SVISHQHLSK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.3162841796875	2	568.314554	1134.61456	0.11515	6.5441E-05	1.8165	0.0010324	1.9317	0.0010978	568.3157958433638	17.502	0.094898	17.502	17.441	17.536	0					6	3	2	0	0	0	0.16075	1	4393	4393		84.817	33.625	1	89359			40597	5726	27188	27295	41115	41115					0.05263335111840206
SVISHQHLSK	10	Unmodified	_SVISHQHLSK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.3150024414062	2	568.314554	1134.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.769	1	17.769	17.269	18.269	0								0	0	0	0.011043	1	5336	5336		107.45	52.733	1				40598	5726	27188	27295	41116	41116					0.05263335111840206
SVISHQHLSK	10	Unmodified	_SVISHQHLSK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.2122802734375	3	379.212128	1134.61456	-0.13239	-5.0203E-05	0.48128	0.00018251	0.34889	0.0001323	379.2122779328386	17.54	0.10777	17.54	17.501	17.609	0					7	3	3	0	0	0	0.58189	1	4401	4401		56.632	25.564	1	110100			40599	5726	27188	27295	41117	41117					0.05263335111840206
SVISHQHLSK	10	Unmodified	_SVISHQHLSK_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	568.31591796875	2	568.314554	1134.61456	-1.2705	-0.00072202	2.8843	0.0016392	1.6139	0.00091718	568.3160643413074	17.565	0.10505	17.565	17.493	17.598	0					5	3	2	0	0	0	0.013123	1	4392	4392		131.12	35.301	1	133880			40600	5726	27188	27295	41118	41118					0.05263335111840206
SVISKPITV	9	Unmodified	_SVISKPITV_					0	0	0			REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2950439453125	2	472.294768	942.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.985	1	36.985	36.485	37.485	0								0	0	0	0.27939	1	12516	12516		39.253	3.6345	1		+		40601	17399	27189	27296	41119	41119					0.1013981510842541
SVISKPITV	9	Unmodified	_SVISKPITV_					0	0	0			REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2944641113281	2	472.294768	942.574983	-0.56745	-0.000268	0.080176	3.7867E-05	-0.48727	-0.00023013	472.29472478754826	37.128	0.35941	37.128	37.023	37.383	0					15	7	3	0	0	0	0.33044	1	14475	14475		47.657	6.8792	1	612430	+		40602	17399	27189	27296	41120	41120					0.1013981510842541
SVISRPIVQK	10	Unmodified	_SVISRPIVQK_					0	0	0		ENSG00000165185|ENST00000337530|KIAA1958;nc|ENSG00000165185|Q8N8K9-3|KIAA1958;nc|ENSG00000165185|Q8N8K9-2|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.8511962890625	2	563.850773	1125.68699	0.40457	0.00022812	0.16744	9.4411E-05	0.57202	0.00032253	563.8508979301181	23.641	0.18154	23.641	23.554	23.736	0					7	4	2	0	0	0	0.35046	1	7868	7868		61.691	13.732	1	369780			40603	5772	27190	27297	41121	41121					0.12917669185435443
SVISSPLLK	9	Unmodified	_SVISSPLLK_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2945251464844	2	472.294768	942.574983	0.21295	0.00010058	-0.64646	-0.00030532	-0.43351	-0.00020474	472.2944092182119	37.221	0.36583	37.221	37.104	37.47	0					21	10	3	0	0	0	0.35021	1	14091	14091		45.972	5.1941	1	543930			40604	7686	27191	27298	41122	41122					0.1013981510842541
SVISSPLLK	9	Unmodified	_SVISSPLLK_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.29473876953125	2	472.294768	942.574983	-0.12308	-5.8129E-05	-0.30501	-0.00014405	-0.42809	-0.00020218	472.29455876389545	37.202	0.25348	37.202	37.095	37.348	0					19	7	4	0	0	0	0.27249	1	14513	14513		52.937	13.684	1	391280			40605	7686	27191	27298	41123	41123					0.1013981510842541
SVISTDPLKR	10	Unmodified	_SVISTDPLKR_					0	0	0		FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant;FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant;FANCA|p.G972Afs*17|1|0.37|ENSG00000187741|chr16:89758643-89758643|C/-|frameshift_variant;nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	558.3247680664062	2	558.324588	1114.63462	-0.47632	-0.00026594	0.59955	0.00033475	0.12323	6.8803E-05	558.3248569219402	28.383	0.096989	28.383	28.31	28.407	0					5	3	2	0	0	0	0.57126	1	9146	9146		32.751	10.171	1	57589			40606	7214	27192	27299	41124	41124					0.081890860518115
SVISTDPLKR	10	Unmodified	_SVISTDPLKR_					0	0	0		FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant;FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant;FANCA|p.G972Afs*17|1|0.37|ENSG00000187741|chr16:89758643-89758643|C/-|frameshift_variant;nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.82666015625	2	558.324588	1114.63462	-0.15617	-8.7194E-05	0.72004	0.00040201	0.56387	0.00031482	558.3249794966058	28.606	0.21278	28.606	28.499	28.712	0					8	4	2	0	0	0	0.3783	1	10490	10490		54.722	3.5297	1	273810			40607	7214	27192	27299	41125	41125					0.081890860518115
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.81561279296875	2	487.815867	973.617182	-0.010952	-5.3425E-06	-0.36985	-0.00018042	-0.3808	-0.00018576	487.815723327245	25.02	0.24235	25.02	24.909	25.152	0					16	7	3	0	0	0	0.016683	1	7461	7461		127.46	53.207	1	1056200			40608	7422	27193	27300	41126	41126					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.5460510253906	3	325.546337	973.617182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.035	1	25.035	24.535	25.535	0								0	0	0	0.36266	1	7480	7480		36.447	10.873	1				40609	7422	27193	27300	41127	41127					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.8157653808594	2	487.815867	973.617182	-0.36476	-0.00017794	-0.13931	-6.7957E-05	-0.50407	-0.00024589	487.8158035066109	25.328	0.51808	25.328	25.226	25.744	0					29	12	4	0	0	0	0.003936	1	8645	8645		163.15	69.955	1	6444600			40610	7422	27193	27300	41128	41128					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.8153381347656	2	487.815867	973.617182	-1.0127	-0.00049401	0.48	0.00023415	-0.53271	-0.00025986	487.8160176946518	25.089	0.20499	25.089	24.984	25.189	0					15	6	3	0	0	0	0.026848	1	7737	7737		112.11	47.9	1	695250			40611	7422	27193	27300	41129	41129					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	325.5462341308594	3	325.546337	973.617182	-0.70278	-0.00022879	0.65552	0.0002134	-0.047263	-1.5386E-05	325.54653808381755	25.069	0.20499	25.069	24.984	25.189	0					12	6	3	0	0	0	0.30951	1	7749	7749		65.465	29.019	1	470310			40612	7422	27193	27300	41130	41130					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.81561279296875	2	487.815867	973.617182	-0.70516	-0.00034399	0.27087	0.00013213	-0.43429	-0.00021185	487.815994731338	25.282	0.2705	25.282	25.171	25.442	0					17	5	4	0	0	0	0.0011548	1	8963	8963		181.41	88.212	1	4085300			40613	7422	27193	27300	41131	41131					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.5462341308594	3	325.546337	973.617182	0.55637	0.00018112	-0.63649	-0.00020721	-0.080128	-2.6085E-05	325.54608836825827	25.282	0.2705	25.282	25.171	25.442	0					11	5	3	0	0	0	0.19605	1	8964	8964		78.264	43.112	1	1491600			40614	7422	27193	27300	41132	41132					0.12931790516802266
SVITQVLNK	9	Unmodified	_SVITQVLNK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;PSIP1|p.S443Y|1|0.29|ENSG00000164985|chr9:15468722-15468722|G/T|missense_variant	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.302978515625	2	501.303124	1000.5917	-0.11378	-5.7036E-05	-2.3353	-0.0011707	-2.4491	-0.0012277	501.3031370668996	37.31	0.25546	37.31	37.168	37.423	0					10	7	2	0	0	0	0.28897	1	14120	14120		51.193	9.7661	1	95276			40615	5750	27194	27301	41133	41133					0.09142315994370165
SVITQVLNK	9	Unmodified	_SVITQVLNK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;PSIP1|p.S443Y|1|0.29|ENSG00000164985|chr9:15468722-15468722|G/T|missense_variant	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3029479980469	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.043	1	37.043	36.543	37.543	0								0	0	0	0.024201	1	13267	13267		98.629	13.714	1				40616	5750	27194	27301	41134	41134					0.09142315994370165
SVITQVLNK	9	Unmodified	_SVITQVLNK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;PSIP1|p.S443Y|1|0.29|ENSG00000164985|chr9:15468722-15468722|G/T|missense_variant	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3036193847656	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.06	1	37.06	36.56	37.56	0								0	0	0	0.3119	1	13274	13274		32.812	4.9302	1				40617	5750	27194	27301	41135	41135					0.09142315994370165
SVITQVLNK	9	Unmodified	_SVITQVLNK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;PSIP1|p.S443Y|1|0.29|ENSG00000164985|chr9:15468722-15468722|G/T|missense_variant	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3029479980469	2	501.303124	1000.5917	1.1212	0.00056205	-1.3917	-0.00069769	-0.27057	-0.00013564	501.3023607832347	37.211	0.31435	37.211	37.103	37.417	0					15	6	3	0	0	0	0.0097668	1	14540	14540		141.52	51.151	1	308060			40618	5750	27194	27301	41136	41136					0.09142315994370165
SVITTPSVGLA	11	Unmodified	_SVITTPSVGLA_					0	0	0		ENST00000527357.5_1_11:803787-804093:-|nuORF	ENST00000527357.5_1_11:803787-804093:-|nuORF	ENST00000527357.5_1_11:803787-804093:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.80078125	2	522.800414	1043.58628	0.43874	0.00022937	-0.71397	-0.00037326	-0.27523	-0.00014389	522.799839808449	35.136	0.13488	35.136	35.082	35.217	0					9	6	2	0	0	0	0.64562	1	11871	11871		32.812	2.9709	1	73849			40619	10388	27195	27302	41137	41137					0.06622592411918049
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7918395996094	2	502.792392	1003.57023	0.54746	0.00027526	-0.54829	-0.00027568	-0.0008255	-4.1506E-07	502.79209030544826	34.223	0.43056	34.223	34.091	34.521	0					42	19	4	0	0	0	0.36135	1	11152	11152		45.022	2.6261	1	635080			40620	4205	27196	27303	41138	41138					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7920837402344	2	502.792392	1003.57023	0.72731	0.00036569	-1.136	-0.00057116	-0.40866	-0.00020547	502.7919002857591	34.497	0.89004	34.497	34.037	34.927	0					62	23	4	0	0	0	0.17062	1	12829	12829		65.157	12.221	1	4070300			40621	4205	27196	27303	41139	41139					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7923278808594	2	502.792392	1003.57023	0.99215	0.00049885	-1.3676	-0.0006876	-0.3754	-0.00018875	502.79154961498233	34.49	1.2197	34.49	33.713	34.933	0					94	31	6	0	0	0	0.17062	1	13292	13292		65.157	3.0498	1	3904000			40622	4205	27196	27303	41140	41140					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.79217529296875	2	502.792392	1003.57023	-0.20203	-0.00010158	0.55366	0.00027838	0.35163	0.0001768	502.79265911613084	34.258	0.25972	34.258	34.141	34.4	0					20	8	3	0	0	0	0.27123	1	12096	12096		53.089	7.1167	1	264620			40623	4205	27196	27303	41141	41141					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.792236328125	2	502.792392	1003.57023	0.13326	6.7002E-05	-0.33928	-0.00017059	-0.20603	-0.00010359	502.79215503335416	34.282	0.56107	34.282	34.095	34.656	0					44	17	4	0	0	0	0.082776	1	12094	12094		83.647	28.871	1	996640			40624	4205	27196	27303	41142	41142					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7925109863281	2	502.792392	1003.57023	-2.0625	-0.001037	1.5206	0.00076456	-0.54184	-0.00027243	502.793116685792	34.277	0.22389	34.277	34.153	34.376	0					11	7	2	0	0	0	0.27123	1	12098	12098		53.089	1.7535	1	212050			40625	4205	27196	27303	41143	41143					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.79229736328125	2	502.792392	1003.57023	-0.48213	-0.00024241	0.43454	0.00021848	-0.04759	-2.3928E-05	502.7926116714367	34.451	0.60178	34.451	34.245	34.847	0					27	12	4	0	0	0	0.099758	1	13192	13192		79.489	9.8615	1	2389700			40626	4205	27196	27303	41144	41144					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	nc|ENSG00000285253|Q6N043-2|ZNF280D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.79205322265625	2	502.792392	1003.57023	2.9281	0.0014722	-4.2728	-0.0021484	-1.3447	-0.00067613	502.78982316285413	34.469	0.7461	34.469	34.069	34.815	0					35	15	4	0	0	0	0.31937	1	13201	13201		48.602	4.2244	1	813780			40627	4205	27196	27303	41145	41145					0.06858930965665877
SVIWTLTPEGK	11	Unmodified	_SVIWTLTPEGK_					0	0	0		DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant;DIS3L2|p.L768Pfs*56|1|0.27|ENSG00000144535|chr2:232334638-232334639|-/C|frameshift_variant;ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233103253-233124568:+|nuORF;ENST00000445090.5_1_2:233028172-233195406:+|nuORF	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	410.894287109375	3	410.895806	1229.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.393	1	22.393	21.893	22.893	0								0	0	0	0.45674	1	6584	6584		24.232	0.85391	1				40628	793	27197	27304	41146	41146					0.05994239366009424
SVIWTLTPEGK	11	Unmodified	_SVIWTLTPEGK_					0	0	0		DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant;DIS3L2|p.L768Pfs*56|1|0.27|ENSG00000144535|chr2:232334638-232334639|-/C|frameshift_variant;ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233103253-233124568:+|nuORF;ENST00000445090.5_1_2:233028172-233195406:+|nuORF	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	410.8948974609375	3	410.895806	1229.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.473	1	22.473	21.973	22.973	0								0	0	0	0.43372	1	6700	6700		29.551	5.3189	1				40629	793	27197	27304	41147	41147					0.05994239366009424
SVIYQNGPSI	10	Unmodified	_SVIYQNGPSI_					0	0	0			REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52	REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.2813720703125	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.336	1	17.336	16.836	17.836	0								0	0	0	0.3805	1	4300	4300		36.447	12.924	1		+		40630	16135	27198	27305	41148	41148					0.01501135235048423
SVKAIREGD	9	Unmodified	_SVKAIREGD_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.51385498046875	3	325.513696	973.519259	0.55648	0.00018114	0.28055	9.1322E-05	0.83703	0.00027247	325.51381192476236	23.287	0.21611	23.287	23.128	23.344	0					6	4	2	0	0	0	0.54267	1	8012	8012		28.081	6.1216	1	130940			40631	5320	27199	27306	41149	41149					0.031439819208117115
SVKASARKNG	10	Unmodified	_SVKASARKNG_					0	0	0			REV__nc|ENSG00000073578|P31040-3|SDHA	REV__nc|ENSG00000073578|P31040-3|SDHA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.8647155761719	3	339.86484	1016.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.073	1	13.073	12.573	13.573	0								0	0	0	0.4162	1	2893	2893		24.232	1.1893	1		+		40632	13205	27200	27307	41150	41150					0.06506779423330045
SVKCPSLLA	9	Carbamidomethyl (C)	_SVKC(Carbamidomethyl (C))PSLLA_	SVKC(1)PSLLA		SVKC(41)PSLLA		0	1	0		ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	325.5173645019531	3	325.516161	973.526652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.923	1	11.923	11.423	12.423	0								0	0	0	0.27025	1	2412	2412		40.778	9.2484	1				40633	3283	27201	27308	41151	41151	127				0.038829981968888205
SVKDCQTGKMH	11	Unmodified	_SVKDCQTGKMH_					0	0	0		ENST00000538126.5_1_16:71712656-71757677:-|nuORF;PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2	ENST00000538126.5_1_16:71712656-71757677:-|nuORF	ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.8619689941406	3	411.862002	1232.56418	-0.44674	-0.000184	0.21712	8.9425E-05	-0.22962	-9.457E-05	411.8623301525165	22.405	0.26846	22.405	22.337	22.605	0					8	5	3	0	0	0	0.76133	1	7481	7481		21.78	0.74819	1	200290			40634	1190	27202	27309	41152	41152					-0.042802785998219406
SVKEPSKTAK	10	Unmodified	_SVKEPSKTAK_					0	0	0		ENST00000536374.1_1_9:80851502-80863830:+|nuORF;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.8115234375	2	537.811313	1073.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.782	1	12.782	12.282	13.282	0								0	0	0	0.28607	1	2762	2762		53.089	10.693	1				40635	4808	27203	27310	41153	41153					0.07421397160487686
SVKEWFNY	8	Unmodified	_SVKEWFNY_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7601318359375	2	536.758549	1071.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.332	1	41.332	40.832	41.832	0								0	0	0	1.7419	1	16250	16250		40.778	1.5253	1				40636	4282	27204	27311	41154	41154					-0.030345189651370674
SVKFDLRAT	9	Unmodified	_SVKFDLRAT_					0	0	0			REV__ENST00000527370.5_1_11:67264693-67266053:-|nuORF	REV__ENST00000527370.5_1_11:67264693-67266053:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	346.19775390625	3	346.197708	1035.57129	1.5084	0.00052222	-1.9498	-0.00067503	-0.44141	-0.00015281	346.1972885380357	15.306	0.16751	15.306	15.246	15.414	0					5	3	2	0	0	0	0.54267	1	4020	4020		28.081	0	1	279820	+		40637	20009	27205	27312	41155	41155					0.05493145334548899
SVKFNKGY	8	Unmodified	_SVKFNKGY_					0	0	0		ENST00000566894.1_1_15:75197493-75197640:-|nuORF;ENST00000564857.1_1_15:75197493-75199009:-|nuORF;nc|ENSG00000178761|Q5XKK7-3|FAM219B;ENSG00000178761|ENST00000357635|FAM219B	ENST00000566894.1_1_15:75197493-75197640:-|nuORF	ENST00000566894.1_1_15:75197493-75197640:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.75555419921875	2	471.75581	941.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.007	1	35.007	34.507	35.507	0								0	0	0	1.7419	1	11828	11828		45.952	12.436	1				40638	6727	27206	27313	41156	41156					0.02397802243035585
SVKGPSLSQ	9	Unmodified	_SVKGPSLSQ_					0	0	0			REV__ENST00000464461.1_1_7:150413703-150416231:+|nuORF	REV__ENST00000464461.1_1_7:150413703-150416231:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.75048828125	2	451.750724	901.486896	-0.11133	-5.0294E-05	-0.67739	-0.00030601	-0.78872	-0.00035631	451.7504352193658	20.338	0.21579	20.338	20.229	20.445	0					12	4	4	0	0	0	0.10506	1	6562	6562		78.264	0.9462	1	693250	+		40639	19403	27207	27314	41157	41157					0.03221194517800541
SVKGPSLSQ	9	Unmodified	_SVKGPSLSQ_					0	0	0			REV__ENST00000464461.1_1_7:150413703-150416231:+|nuORF	REV__ENST00000464461.1_1_7:150413703-150416231:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7504577636719	2	451.750724	901.486896	-0.40868	-0.00018462	0.1182	5.3399E-05	-0.29048	-0.00013122	451.75068915337266	20.302	0.36856	20.302	20.143	20.511	0					17	7	4	0	0	0	0.082776	1	6437	6437		83.647	0.89654	1	1374300	+		40640	19403	27207	27314	41158	41158					0.03221194517800541
SVKIHLEVL	9	Unmodified	_SVKIHLEVL_					0	0	0		ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.5499267578125	3	346.54997	1036.62808	0.50202	0.00017397	-0.54878	-0.00019018	-0.046761	-1.6205E-05	346.54977407473194	20.888	0.22845	20.888	20.782	21.01	0					9	5	3	0	0	0	0.55379	1	6561	6561		26.693	1.1189	1	1475100			40641	6524	27208	27315	41159	41159					0.11123192891091094
SVKIKKNK	8	Unmodified	_SVKIKKNK_					0	0	0		ENSG00000172809|ENST00000311111|RPL38	ENSG00000172809|ENST00000311111|RPL38	ENSG00000172809|ENST00000311111|RPL38	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.8160705566406	2	472.816202	943.617851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.754	1	11.754	11.254	12.254	0								0	0	0	1.7419	1	2330	2330		4.3163	0	1				40642	6385	27209	27316	41160	41160					0.14378629956513578
SVKISNKFL	9	Unmodified	_SVKISNKFL_					0	0	0			REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF	REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.8780822753906	3	345.878087	1034.61243	0.51826	0.00017925	-0.43493	-0.00015043	0.083333	2.8823E-05	345.8779478008562	16.055	0.16687	16.055	15.946	16.112	0					8	3	3	0	0	0	0.57706	1	4527	4527		24.519	0	1	293360	+		40643	12990	27210	27317	41161	41161					0.09650906374031365
SVKKKWEDS	9	Unmodified	_SVKKKWEDS_					0	0	0			REV__nc|ENSG00000116783|Q59H18-3|TNNI3K	REV__nc|ENSG00000116783|Q59H18-3|TNNI3K	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7952270507812	2	553.795663	1105.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.799	1	11.799	11.299	12.299	0								0	0	0	0.34845	1	2356	2356		25.574	1.0549	1		+		40644	20987	27211	27318	41162	41162					0.02820824126365551
SVKKPINKQ	9	Unmodified	_SVKKPINKQ_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	347.885009765625	3	347.885353	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.65	1	19.65	19.15	20.15	0								0	0	0	0.35899	1	5123	5123		37.812	7.4938	1				40645	1333	27212	27319	41163	41163					0.11553711122587629
SVKLYRRE	8	Unmodified	_SVKLYRRE_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1;WDHD1|p.R429Gfs*38|1|0.25|ENSG00000198554|chr14:54991269-54991269|G/-|frameshift_variant;WDHD1|p.L485Nfs*20|1|0.06|ENSG00000198554|chr14:54989101-54989102|-/GATTATT|frameshift_variant;WDHD1|p.K611Lfs*83|1|0.08|ENSG00000198554|chr14:54984798-54984799|-/AAAAAAAACAAGTATAA|frameshift_variant	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.2107849121094	3	350.873336	1049.59818	-0.046024	-1.6149E-05	-0.19725	-6.9211E-05	-0.24328	-8.536E-05	350.8732744073301	15.605	0.36813	15.605	15.497	15.865	0					15	7	4	0	0	0	0.76283	1	4235	4235		27.882	3.3631	1	1765500			40646	7574	27213	27320	41164	41164					0.07536253945750104
SVKMKGKLLIS	11	Unmodified	_SVKMKGKLLIS_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.91998291015625	3	401.921298	1202.74206	-2.259	-0.00090793	-0.74263	-0.00029848	-3.0016	-0.0012064	401.92092840447964	32.445	0.22667	32.445	32.378	32.605	0					14	7	3	0	0	0	0.79011	1	11287	11287		17.167	0.44936	1	224810	+		40647	13997	27214	27321	41165	41165					0.14880339661704056
SVKNIWILG	9	Unmodified	_SVKNIWILG_					0	0	0			REV__ENST00000493208.1_1_5:131825047-131826375:-|nuORF	REV__ENST00000493208.1_1_5:131825047-131826375:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.873046875	3	343.874565	1028.60187	-0.7591	-0.00026103	-2.3418	-0.0008053	-3.1009	-0.0010663	343.8736926206521	25.113	0.16606	25.113	25.03	25.196	0					9	5	2	0	0	0	0.5879	1	7775	7775		30.318	0.76697	1	96866	+		40648	19737	27215	27322	41166	41166					0.08870923719587154
SVKNKIFTA	9	Unmodified	_SVKNKIFTA_					0	0	0		nc|ENSG00000126858|Q8IXI2-5|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5341796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.621	1	22.621	22.121	23.121	0								0	0	0	0.3304	1	6769	6769		36.447	10.873	1				40649	3492	27216	27323	41167	41167					0.07810333339944009
SVKNTKRR	8	Unmodified	_SVKNTKRR_					0	0	0		ENST00000463260.5_1_1:1322613-1323455:-|nuORF;nc|ENSG00000221978|Q96S94-3|CCNL2;ENST00000482621.5_1_1:1322613-1328165:-|nuORF;ENST00000481223.6_1_1:1322613-1326370:-|nuORF;ENSG00000221978|ENST00000400809|CCNL2	ENST00000463260.5_1_1:1322613-1323455:-|nuORF	ENST00000463260.5_1_1:1322613-1323455:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.3046875	2	494.804157	987.593761	-0.065516	-3.2417E-05	0.8154	0.00040346	0.74988	0.00037104	494.8053057379136	23.485	0.25747	23.485	23.397	23.655	0					15	9	2	0	0	0	0.72381	1	6825	6825		13.775	0	1	171920			40650	7853	27217	27324	41168	41168					0.09946789522848576
SVKPQILV	8	Unmodified	_SVKPQILV_					0	0	0		RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.2844543457031	2	442.284203	882.553853	0.27844	0.00012315	-0.36499	-0.00016143	-0.086545	-3.8278E-05	442.2840747510976	33.341	0.57743	33.341	33.09	33.667	0					50	22	3	0	0	0	0.77246	1	10756	10756		24.203	1.1603	1	1683300			40651	6408	27218	27325	41169	41169					0.10787849799567084
SVKPSEYSL	9	Unmodified	_SVKPSEYSL_					0	0	0			REV__ENST00000465463.1_1_1:235605175-235611824:+|nuORF	REV__ENST00000465463.1_1_1:235605175-235611824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2635803222656	2	505.263665	1008.51278	0.098998	5.002E-05	0.024696	1.2478E-05	0.12369	6.2498E-05	505.26378348256986	24.617	0.27796	24.617	24.48	24.758	0					9	6	2	0	0	0	0.60749	1	7671	7671		20.947	0	1	87036	+		40652	19411	27219	27326	41170	41170					0.008860439694331035
SVKPTLLSL	9	Unmodified	_SVKPTLLSL_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.3026428222656	2	479.302593	956.590633	0.024871	1.1921E-05	0.60838	0.0002916	0.63325	0.00030352	479.30308279629867	34.415	0.26429	34.415	34.293	34.557	0					19	8	3	0	0	0	0.50858	1	12152	12152		31.53	1.0262	1	129810			40653	1689	27220	27327	41171	41171					0.11060101625469088
SVKTTTTIVT	10	Unmodified	_SVKTTTTIVT_					0	0	0			REV__GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant	REV__GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.8732604980469	3	350.87289	1049.59684	0.70121	0.00024604	0.1573	5.5192E-05	0.85851	0.00030123	350.87298193956246	15.621	0.29154	15.621	15.533	15.824	0					14	7	4	0	0	0	0.5276	1	4082	4082		42.338	42.338	1	2908400	+		40654	14417	27221	27328	41172	41172					0.07402575066339523
SVKTTTTIVT	10	Unmodified	_SVKTTTTIVT_					0	0	0			REV__GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant	REV__GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.806640625	2	525.805697	1049.59684	3.4502	0.0018141	-1.3922	-0.00073203	2.058	0.0010821	525.8048925489063	15.57	0.31893	15.57	15.513	15.832	0					12	6	2	0	0	0	0.38179	1	4145	4145		54.776	3.4409	1	1753600	+		40655	14417	27221	27328	41173	41173					0.07402575066339523
SVKTYQEVAQK	11	Unmodified	_SVKTYQEVAQK_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.5657043457031	3	427.566348	1279.67722	-0.16477	-7.0449E-05	-1.7769	-0.00075976	-1.9417	-0.00083021	427.5655266938272	13.487	0.12971	13.487	13.438	13.568	0					11	6	3	0	0	0	0.55968	1	2720	2720		39.873	4.6949	1	130100			40656	1884	27222	27329	41174	41174					0.048564363893547124
SVKVGRPPDP	10	Unmodified	_SVKVGRPPDP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.20135498046875	3	351.201341	1050.58219	1.4588	0.00051234	-1.2697	-0.00044593	0.18909	6.641E-05	351.2009015833657	22.73	0.21713	22.73	22.622	22.839	0					11	4	4	0	0	0	0.66185	1	7593	7593		31.634	0.10446	1	1428900	+		40657	15602	27223	27330	41175	41175					0.05892547708845086
SVKVIPTIF	9	Unmodified	_SVKVIPTIF_					0	0	0			REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.3131103515625	2	502.312961	1002.61137	0.97789	0.00049121	-0.30923	-0.00015533	0.66866	0.00033587	502.312639646363	44.864	0.77239	44.864	44.567	45.339	0					87	44	3	0	0	0	0.47473	1	17347	17347		20.947	0	1	342540	+		40658	14632	27224	27331	41176	41176					0.11016692005125606
SVKVWNVAE	9	Unmodified	_SVKVWNVAE_					0	0	0		ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2797241210938	2	516.279649	1030.54475	0.27802	0.00014354	-0.081591	-4.2124E-05	0.19643	0.00010141	516.2796063589373	30.064	0.55886	30.064	29.861	30.42	0					40	20	3	0	0	0	0.48389	1	9516	9516		34.173	0	1	180940			40659	2864	27225	27332	41177	41177					0.030694564432451443
SVKWKKSD	8	Unmodified	_SVKWKKSD_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3;TM9SF3|p.F404Lfs*6|3|0.31|ENSG00000077147|chr10:96533164-96533164|A/-|frameshift_variant	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	326.5183410644531	3	326.51867	976.53418	-0.66762	-0.00021799	0.77945	0.0002545	0.11182	3.6512E-05	326.51891461596045	19.877	0.23022	19.877	19.65	19.881	0					11	8	2	0	0	0	0.79882	1	5402	5402		15.642	3.4351	1	65786			40660	1575	27226	27333	41178	41178					0.04497473788796924
SVLADPKLT	9	Unmodified	_SVLADPKLT_					0	0	0		ENST00000560717.5_2_15:65295402-65319196:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.27587890625	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.727	1	46.727	46.227	47.227	0								0	0	0	0.3304	1	18691	18691		29.15	0	1				40661	2256	27227	27334	41179	41179					0.06502938211690434
SVLAETIKK	9	Unmodified	_SVLAETIKK_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.8052673339844	2	494.8055	987.596446	-0.065516	-3.2417E-05	-1.8981	-0.00093921	-1.9637	-0.00097163	494.8053057379136	23.485	0.25747	23.485	23.397	23.655	0					15	9	2	0	0	0	0.30951	1	6794	6794		49.442	14.241	1	171920			40662	1521	27228	27335	41180	41180					0.10215200137145075
SVLAETIKK	9	Unmodified	_SVLAETIKK_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.80511474609375	2	494.8055	987.596446	-0.42363	-0.00020962	-1.0992	-0.00054389	-1.5228	-0.0007535	494.8054362056191	23.826	0.36871	23.826	23.721	24.09	0					18	8	4	0	0	0	0.063171	1	7930	7930		90.601	13.283	1	1127400			40663	1521	27228	27335	41181	41181					0.10215200137145075
SVLAETIKK	9	Unmodified	_SVLAETIKK_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.8052978515625	2	494.8055	987.596446	-2.4665	-0.0012204	2.2699	0.0011231	-0.19665	-9.7305E-05	494.80642570285704	23.575	0.13609	23.575	23.502	23.638	0					7	3	3	0	0	0	0.28897	1	7217	7217		51.193	5.2204	1	118780			40664	1521	27228	27335	41182	41182					0.10215200137145075
SVLAQQAAK	9	Unmodified	_SVLAQQAAK_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2662048339844	2	458.266542	914.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.847	1	19.847	19.347	20.347	0								0	0	0	0.14033	1	6342	6342		62.107	6.6032	1				40665	3901	27229	27336	41183	41183					0.05785187271749237
SVLAQQAAK	9	Unmodified	_SVLAQQAAK_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.266357421875	2	458.266542	914.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.675	1	19.675	19.175	20.175	0								0	0	0	0.11736	1	5389	5389		67.494	1.6905	1				40666	3901	27229	27336	41184	41184					0.05785187271749237
SVLAQQAAK	9	Unmodified	_SVLAQQAAK_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2662658691406	2	458.266542	914.51853	2.5031	0.0011471	-2.6698	-0.0012235	-0.16665	-7.6372E-05	458.26521511822904	19.816	0.16965	19.816	19.706	19.876	0					5	3	2	0	0	0	0.063171	1	6206	6206		90.601	26.394	1	901910			40667	3901	27229	27336	41185	41185					0.05785187271749237
SVLDEGPW	8	Unmodified	_SVLDEGPW_					0	0	0			REV__ENST00000485213.1_1_X:48434327-48434552:+|nuORF	REV__ENST00000485213.1_1_X:48434327-48434552:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.71624755859375	2	451.71635	901.418148	-0.1055	-4.7658E-05	-0.51833	-0.00023414	-0.62383	-0.00028179	451.7162300227998	23.752	0.14619	23.752	23.713	23.86	0					5	3	2	0	0	0	0.64096	1	7334	7334		42.474	1.9018	1	246630	+		40668	19422	27230	27337	41186	41186					-0.036504697819054854
SVLDGAVVK	9	Unmodified	_SVLDGAVVK_					0	0	0		ENSG00000111816|ENST00000606080|FRK	ENSG00000111816|ENST00000606080|FRK	ENSG00000111816|ENST00000606080|FRK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2632751464844	2	444.263468	886.512382	-0.21619	-9.6044E-05	-0.24793	-0.00011015	-0.46412	-0.00020619	444.26332852532477	31.149	0.27209	31.149	31.044	31.316	0					13	6	3	0	0	0	0.048471	1	11728	11728		95.815	23.938	1	694200			40669	2700	27231	27338	41187	41187					0.06458669040239329
SVLDIETRK	9	Unmodified	_SVLDIETRK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.8037109375	2	530.803488	1059.59242	0.11791	6.2588E-05	0.33959	0.00018026	0.4575	0.00024284	530.8037539456595	27.58	0.21711	27.58	27.489	27.706	0					12	5	3	0	0	0	0.11898	1	9654	9654		75.043	16.813	1	695260			40670	3954	27232	27339	41188	41188					0.0650111064342127
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7953796386719	2	495.795132	989.575711	0.05033	2.4953E-05	0.2372	0.0001176	0.28753	0.00014256	495.79526098433985	23.726	0.15779	23.726	23.655	23.812	0					9	5	2	0	0	0	0.21263	1	6912	6912		60.118	8.7828	1	172330			40671	7546	27233	27340	41189	41189					0.08050609757469829
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.79498291015625	2	495.795132	989.575711	0.73313	0.00036348	-0.5512	-0.00027328	0.18193	9.0201E-05	495.7946333401031	24.055	0.40265	24.055	23.785	24.188	0					19	9	4	0	0	0	0.020674	1	8044	8044		120.87	30.499	1	1325600			40672	7546	27233	27340	41190	41190					0.08050609757469829
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.79437255859375	2	495.795132	989.575711	-1.2155	-0.00060266	0.757	0.00037532	-0.45854	-0.00022734	495.79533151120165	23.771	0.15851	23.771	23.701	23.86	0					13	5	3	0	0	0	0.16806	1	7182	7182		65.465	8.7443	1	338920			40673	7546	27233	27340	41191	41191					0.08050609757469829
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.79425048828125	2	495.795132	989.575711	0.72534	0.00035962	-1.431	-0.0007095	-0.70569	-0.00034988	495.7942992276237	24.003	0.21522	24.003	23.898	24.113	0					14	4	4	0	0	0	0.017741	1	8335	8335		125.71	29.898	1	1884200			40674	7546	27233	27340	41192	41192					0.08050609757469829
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7950744628906	2	495.795132	989.575711	0.10722	5.3158E-05	-0.33607	-0.00016662	-0.22885	-0.00011346	495.79487754915556	23.803	0.18533	23.803	23.713	23.899	0					7	4	2	0	0	0	0.19952	1	7333	7333		61.691	17.314	1	270350			40675	7546	27233	27340	41193	41193					0.08050609757469829
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.79498291015625	2	495.795132	989.575711	-2.4043	-0.001192	2.0747	0.0010286	-0.32962	-0.00016342	495.796202209551	23.79	0.14972	23.79	23.738	23.888	0					7	3	3	0	0	0	0.02953	1	7327	7327		109.48	34.435	1	172720			40676	7546	27233	27340	41194	41194					0.08050609757469829
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.794921875	2	495.795132	989.575711	0.9505	0.00047125	-1.2201	-0.00060492	-0.2696	-0.00013367	495.7944426158924	23.972	0.26747	23.972	23.863	24.13	0					15	5	4	0	0	0	0.0088974	1	8214	8214		143.37	41.773	1	1907000			40677	7546	27233	27340	41195	41195					0.08050609757469829
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.1938171386719	3	333.194075	996.560395	0.25868	8.6191E-05	-0.69149	-0.0002304	-0.43281	-0.00014421	333.1937866875933	30.727	0.24063	30.727	30.586	30.827	0					13	10	2	0	0	0	0.13726	1	9789	9789		70.816	24.359	1	137230			40678	2999	27234	27341	41196	41196					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.1940002441406	3	333.194075	996.560395	0.52113	0.00017364	-1.1684	-0.00038931	-0.6473	-0.00021568	333.1936886708741	30.952	0.21564	30.952	30.865	31.08	0					12	5	3	0	0	0	0.30841	1	11203	11203		49.536	13.089	1	1968800			40679	2999	27234	27341	41197	41197					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2872619628906	2	499.287474	996.560395	-1.0575	-0.00052801	0.9319	0.00046528	-0.12564	-6.273E-05	499.2877278581475	30.745	0.26203	30.745	30.667	30.929	0					16	9	3	0	0	0	0.026848	1	10118	10118		107.01	57.566	1	296860			40680	2999	27234	27341	41198	41198					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.28717041015625	2	499.287474	996.560395	0.8628	0.00043079	-0.78825	-0.00039356	0.074551	3.7222E-05	499.28694120585686	30.941	0.49371	30.941	30.854	31.348	0					21	11	4	0	0	0	0.014413	1	11609	11609		127.46	56.166	1	1620100			40681	2999	27234	27341	41199	41199					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.28717041015625	2	499.287474	996.560395	0.16706	8.3413E-05	-0.82961	-0.00041421	-0.66254	-0.0003308	499.28707727333955	30.735	0.18885	30.735	30.654	30.842	0					9	5	2	0	0	0	0.13109	1	10510	10510		65.465	0	1	169290			40682	2999	27234	27341	41200	41200					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	333.19384765625	3	333.194075	996.560395	-1.9071	-0.00063544	1.8432	0.00061414	-0.063915	-2.1296E-05	333.19452197837404	30.74	0.14853	30.74	30.644	30.793	0					9	4	3	0	0	0	0.46194	1	10505	10505		36.447	0	1	106940			40683	2999	27234	27341	41201	41201					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	333.19390869140625	3	333.194075	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.934	1	30.934	30.434	31.434	0								0	0	0	0.20989	1	11508	11508		49.536	16.786	1				40684	2999	27234	27341	41202	41202					0.061977429602734446
SVLDSRHQA	9	Unmodified	_SVLDSRHQA_					0	0	0			REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.1771545410156	3	338.177195	1011.50976	0.514	0.00017382	-0.74092	-0.00025056	-0.22691	-7.6737E-05	338.1769595510776	14.374	0.16666	14.374	14.289	14.456	0					7	4	2	0	0	0	0.41113	1	3494	3494		40.778	3.27	1	751630	+		40685	13784	27235	27342	41203	41203					0.004462136352799462
SVLDSSALK	9	Unmodified	_SVLDSSALK_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25573299-25581087:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2582092285156	2	460.258382	918.502212	0.81801	0.00037649	-0.96347	-0.00044345	-0.14547	-6.6952E-05	460.2580128875447	31.045	0.39052	31.045	30.835	31.225	0					35	9	5	0	0	0	0.011389	1	11253	11253		138.06	31.647	1	4001400			40686	7423	27236	27343	41204	41204					0.039700613149989294
SVLDSSALK	9	Unmodified	_SVLDSSALK_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25573299-25581087:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.25775146484375	2	460.258382	918.502212	-0.15318	-7.0503E-05	-0.90172	-0.00041502	-1.0549	-0.00048553	460.25803879782393	31.052	0.33213	31.052	30.949	31.281	0					18	7	3	0	0	0	0.02429	1	11658	11658		114.89	29.734	1	4495900			40687	7423	27236	27343	41205	41205					0.039700613149989294
SVLDSSALK	9	Unmodified	_SVLDSSALK_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25573299-25581087:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2584228515625	2	460.258382	918.502212	-0.10872	-5.0038E-05	-0.084839	-3.9048E-05	-0.19356	-8.9086E-05	460.258319141873	30.836	0.23793	30.836	30.736	30.974	0					13	6	3	0	0	0	0.30841	1	10527	10527		49.536	18.006	1	402050			40688	7423	27236	27343	41206	41206					0.039700613149989294
SVLDSSALK	9	Unmodified	_SVLDSSALK_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25573299-25581087:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2581787109375	2	460.258382	918.502212	-0.45354	-0.00020875	-0.26197	-0.00012057	-0.71551	-0.00032932	460.25829317129984	31.028	0.30872	31.028	30.881	31.19	0					27	6	6	0	0	0	0.02429	1	11544	11544		114.89	43.017	1	4910000			40689	7423	27236	27343	41207	41207					0.039700613149989294
SVLDTVEVL	9	Unmodified	_SVLDTVEVL_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	325.5174560546875	3	325.518336	973.533177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.941	1	11.941	11.441	12.441	0								0	0	0	0.40728	1	2411	2411		5.5578	0	1		+		40690	16843	27237	27344	41208	41208					0.04535214629231632
SVLEEEVEL	9	Unmodified	_SVLEEEVEL_					0	0	0		nc|ENSG00000124092|Q8NI51-9|CTCFL;nc|ENSG00000124092|Q8NI51-4|CTCFL;nc|ENSG00000124092|Q8NI51-2|CTCFL;nc|ENSG00000124092|Q8NI51-8|CTCFL;CTCFL|p.A642Efs*10|1|0.05|ENSG00000124092|chr20:57498614-57498617|CTGG/-|frameshift_variant;ENSG00000124092|ENST00000243914|CTCFL;nc|ENSG00000124092|Q8NI51-3|CTCFL;nc|ENSG00000124092|Q8NI51-7|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.76904296875	2	523.766237	1045.51792	3.4201	0.0017914	1.4444	0.00075652	4.8645	0.0025479	523.7669186158595	34.855	0.31489	34.855	34.75	35.065	0					9	6	2	0	0	0	0.22377	1	13435	13435		58.782	7.4465	1	2838100			40691	707	27238	27345	41209	41209					-0.0030169695860422507
SVLEGSGLPR	10	Unmodified	_SVLEGSGLPR_					0	0	0		nc|ENSG00000083544|Q9H7E2-2|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;ENSG00000083544|ENST00000377881|TDRD3;TDRD3|p.R406Kfs*3|1|0.3|ENSG00000083544|chr13:60528713-60528714|-/A|frameshift_variant	nc|ENSG00000083544|Q9H7E2-2|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.78271484375	2	507.782556	1013.55056	0.88535	0.00044956	-0.86632	-0.0004399	0.019023	9.6595E-06	507.78239245003783	31.93	0.20949	31.93	31.822	32.031	0					14	5	3	0	0	0	0.28675	1	11675	11675		68.846	1.3525	1	111470			40692	1697	27239	27346	41210	41210					0.044325549548943854
SVLEGVLSK	9	Unmodified	_SVLEGVLSK_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.27667236328125	2	466.276575	930.538597	0.061296	2.8581E-05	0.20016	9.3332E-05	0.26146	0.00012191	466.2767034079824	37.034	0.18974	37.034	36.957	37.147	0					21	10	3	0	0	0	0.078509	1	12129	12129		85.161	12.282	1	224800			40693	1663	27240	27347	41211	41211					0.07054938211706485
SVLEGVLSK	9	Unmodified	_SVLEGVLSK_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2760925292969	2	466.276575	930.538597	-0.91186	-0.00042518	0.10687	4.9829E-05	-0.80499	-0.00037535	466.27658684756886	37.095	0.22828	37.095	37.042	37.27	0					19	12	2	0	0	0	0.18416	1	12550	12550		63.534	4.7519	1	213590			40694	1663	27240	27347	41212	41212					0.07054938211706485
SVLEGVLSK	9	Unmodified	_SVLEGVLSK_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2761535644531	2	466.276575	930.538597	-0.135	-6.2947E-05	0.16481	7.6848E-05	0.029812	1.3901E-05	466.2768318561603	37.308	0.24072	37.308	37.237	37.478	0					10	7	2	0	0	0	0.047855	1	14582	14582		96.034	26.406	1	140150			40695	1663	27240	27347	41213	41213					0.07054938211706485
SVLEGVLSK	9	Unmodified	_SVLEGVLSK_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2768859863281	2	466.276575	930.538597	-0.17947	-8.3682E-05	0.333	0.00015527	0.15353	7.159E-05	466.27662521458467	37.083	0.15807	37.083	37.027	37.185	0					12	7	2	0	0	0	0.022525	1	13278	13278		117.81	21.996	1	121830			40696	1663	27240	27347	41214	41214					0.07054938211706485
SVLEGVLSK	9	Unmodified	_SVLEGVLSK_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2762451171875	2	466.276575	930.538597	-0.49882	-0.00023259	-0.17453	-8.1378E-05	-0.67334	-0.00031396	466.2764196942738	37.277	0.36471	37.277	37.12	37.484	0					16	7	3	0	0	0	0.014413	1	14546	14546		131.62	27.559	1	1020100			40697	1663	27240	27347	41215	41215					0.07054938211706485
SVLEMILP	8	Unmodified	_SVLEMILP_					0	0	0		ENST00000359195.3_1_7:106505947-106508023:+|nuORF	ENST00000359195.3_1_7:106505947-106508023:+|nuORF	ENST00000359195.3_1_7:106505947-106508023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2577819824219	2	451.256797	900.499041	0.87633	0.00039545	-0.97034	-0.00043787	-0.094015	-4.2425E-05	451.2563425714786	22.378	0.26846	22.378	22.27	22.538	0					14	5	3	0	0	0	0.70055	1	7445	7445		33.516	0	1	1993500			40698	8846	27241	27348	41216	41216					0.044810949366365094
SVLENFVGR	9	Unmodified	_SVLENFVGR_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2782897949219	2	510.777274	1019.53999	0.98224	0.0005017	-1.2112	-0.00061863	-0.22892	-0.00011693	510.7765159233945	40.468	0.24501	40.468	40.405	40.65	0					15	9	2	0	0	0	0.032383	1	15427	15427		106.68	47.901	1	127990			40699	831	27242	27349	41217	41217					0.031005723004795982
SVLENFVGR	9	Unmodified	_SVLENFVGR_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.7774658203125	2	510.777274	1019.53999	0.0059218	3.0247E-06	0.23854	0.00012184	0.24446	0.00012486	510.7774750571021	40.41	0.21198	40.41	40.308	40.52	0					10	4	3	0	0	0	0.02953	1	16032	16032		109.48	58.143	1	295570			40700	831	27242	27349	41218	41218					0.031005723004795982
SVLENFVGR	9	Unmodified	_SVLENFVGR_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.27825927734375	2	510.777274	1019.53999	1.3836	0.00070671	-2.4481	-0.0012504	-1.0645	-0.00054374	510.77688169407156	40.399	0.25474	40.399	40.295	40.55	0					13	5	3	0	0	0	0.047855	1	16028	16028		96.034	34.342	1	413730			40701	831	27242	27349	41219	41219					0.031005723004795982
SVLEQSFLR	9	Unmodified	_SVLEQSFLR_					0	0	0		ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant;ENSG00000085840|ENST00000371568|ORC1	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7990112304688	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.587	1	40.587	40.087	41.087	0								0	0	0	0.066158	1	15475	15475		81.525	31.989	1				40702	1737	27243	27350	41220	41220					0.046171279889904326
SVLEQSFLR	9	Unmodified	_SVLEQSFLR_					0	0	0		ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant;ENSG00000085840|ENST00000371568|ORC1	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7989501953125	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.554	1	40.554	40.054	41.054	0								0	0	0	0.088368	1	15982	15982		75.043	5.4157	1				40703	1737	27243	27350	41221	41221					0.046171279889904326
SVLEQSFLR	9	Unmodified	_SVLEQSFLR_					0	0	0		ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant;ENSG00000085840|ENST00000371568|ORC1	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7994995117188	2	539.798206	1077.58186	0.67575	0.00036477	0.36526	0.00019717	1.041	0.00056194	539.798417434816	40.512	0.19873	40.512	40.407	40.606	0					5	4	2	0	0	0	0.11411	1	16082	16082		76.17	16.051	1	61006			40704	1737	27243	27350	41222	41222					0.046171279889904326
SVLEQSFLR	9	Unmodified	_SVLEQSFLR_					0	0	0		ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant;ENSG00000085840|ENST00000371568|ORC1	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	ORC1|p.N769K|1|0.24|ENSG00000085840|chr1:52374894-52374894|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.79833984375	2	539.798206	1077.58186	2.0866	0.0011264	0.56008	0.00030233	2.6467	0.0014287	539.7985891427081	40.495	0.46724	40.495	40.295	40.762	0					15	10	2	0	0	0	0.14578	1	16094	16094		68.846	5.3123	1	304540			40705	1737	27243	27350	41223	41223					0.046171279889904326
SVLEQTKLK	9	Unmodified	_SVLEQTKLK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.3167114257812	2	523.316232	1044.61791	-0.0071161	-3.724E-06	0.75763	0.00039648	0.75052	0.00039276	523.3167163144975	23.737	0.11708	23.737	23.679	23.796	0					4	2	2	0	0	0	0.13726	1	8231	8231		70.816	12.586	1	188290			40706	6249	27244	27351	41224	41224					0.09738585165837321
SVLERFAG	8	Unmodified	_SVLERFAG_					0	0	0			REV__ENST00000468588.1_1_1:109779017-109779290:+|nuORF	REV__ENST00000468588.1_1_1:109779017-109779290:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.7400207519531	2	439.74016	877.465767	-0.35159	-0.00015461	-0.22654	-9.9617E-05	-0.57813	-0.00025423	439.7399544591589	24.121	0.21821	24.121	24.012	24.23	0					8	4	3	0	0	0	0.3961	1	8413	8413		71.296	5.4925	1	262270	+		40707	12968	27245	27352	41225	41225					0.022132292089509065
SVLETLVRDF	10	Unmodified	_SVLETLVRDF_					0	0	0			REV__nc|ENSG00000186350|P19793-2|RXRA	REV__nc|ENSG00000186350|P19793-2|RXRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.8252563476562	2	589.824421	1177.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.794	1	32.794	32.294	33.294	0								0	0	0	0.37293	1	11441	11441		14.137	0	1		+		40708	15170	27246	27353	41226	41226					0.05257666331931432
SVLETVEAARK	11	Unmodified	_SVLETVEAARK_					0	0	0		tr|U7SNA5|U7SNA5_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01768PE=3SV=1	tr|U7SNA5|U7SNA5_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01768PE=3SV=1	tr|U7SNA5|U7SNA5_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01768PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.5626525878906	3	401.562827	1201.66665	0.6699	0.00026901	-1.1653	-0.00046795	-0.49543	-0.00019895	401.5623033969199	23.153	0.1466	23.153	23.063	23.21	0					5	3	2	0	0	0	0.67983	1	7635	7635		29.551	0	1	262510			40709	22675	27247	27354	41227	41227					0.07388453734915856
SVLEVRTENLK	11	Unmodified	_SVLEVRTENLK_					0	0	0		nc|ENSG00000162236|Q13190-3|STX5;nc|ENSG00000162236|Q13190-2|STX5;nc|ENSG00000162236|Q13190-4|STX5;ENSG00000162236|ENST00000294179|STX5	nc|ENSG00000162236|Q13190-3|STX5	nc|ENSG00000162236|Q13190-3|STX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	644.3670043945312	2	644.366984	1286.71942	0.5177	0.00033359	-0.20084	-0.00012941	0.31686	0.00020417	644.3668160840562	29.127	0.17225	29.127	29.034	29.207	0					10	4	3	0	0	0	0.004134	1	10374	10374		128.35	32.533	1	407270			40710	5448	27248	27355	41228	41228					0.08752411797740933
SVLEVRTENLK	11	Unmodified	_SVLEVRTENLK_					0	0	0		nc|ENSG00000162236|Q13190-3|STX5;nc|ENSG00000162236|Q13190-2|STX5;nc|ENSG00000162236|Q13190-4|STX5;ENSG00000162236|ENST00000294179|STX5	nc|ENSG00000162236|Q13190-3|STX5	nc|ENSG00000162236|Q13190-3|STX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	644.3672485351562	2	644.366984	1286.71942	-0.55234	-0.00035591	0.68078	0.00043867	0.12844	8.2764E-05	644.3674624787167	29.138	0.15865	29.138	29.037	29.195	0					7	3	3	0	0	0	0.0092585	1	10745	10745		125.68	40.521	1	373290			40711	5448	27248	27355	41229	41229					0.08752411797740933
SVLEVVSEK	9	Unmodified	_SVLEVVSEK_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.27923583984375	2	495.279315	988.544076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.248	1	33.248	32.748	33.748	0								0	0	0	0.088368	1	12278	12278		75.043	20.267	1				40712	3447	27249	27356	41230	41230					0.04934617003527819
SVLEVVSEK	9	Unmodified	_SVLEVVSEK_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.27996826171875	2	495.279315	988.544076	0.08578	4.2485E-05	0.2362	0.00011699	0.32198	0.00015947	495.2798809241588	33.005	0.11073	33.005	32.963	33.074	0					5	3	2	0	0	0	0.25761	1	11548	11548		54.722	5.2808	1	55318			40713	3447	27249	27356	41231	41231					0.04934617003527819
SVLFLGFK	8	Unmodified	_SVLFLGFK_					0	0	0			REV__ENST00000288937.6_1_11:6702876-6703137:-|nuORF	REV__ENST00000288937.6_1_11:6702876-6703137:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.7711181640625	2	455.773471	909.53239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.267	1	12.267	11.767	12.767	0								0	0	0	1.7419	1	2416	2416		42.474	5.3154	1		+		40714	18150	27250	27357	41232	41232					0.07400464770864801
SVLFLPML	8	Unmodified	_SVLFLPML_					0	0	0		ENST00000488457.1_1_2:25600201-25602432:-|nuORF	ENST00000488457.1_1_2:25600201-25602432:-|nuORF	ENST00000488457.1_1_2:25600201-25602432:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.27105712890625	2	460.269707	918.524861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.849	1	31.849	31.349	32.349	0								0	0	0	1.7419	1	12051	12051		52.299	7.7681	1				40715	10047	27251	27358	41233	41233					0.06233989178917909
SVLGATTGTGL	11	Unmodified	_SVLGATTGTGL_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.768798828125	2	488.769114	975.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.978	1	22.978	22.478	23.478	0								0	0	0	0.4303	1	7722	7722		30.318	1.1477	1		+		40716	14146	27252	27359	41234	41234					0.034934463437252816
SVLGGLWAIG	10	Unmodified	_SVLGGLWAIG_					0	0	0		TRIM60|p.F385L|1|0.43|ENSG00000176979|chr4:165041227-165041227|C/A|missense_variant	TRIM60|p.F385L|1|0.43|ENSG00000176979|chr4:165041227-165041227|C/A|missense_variant	TRIM60|p.F385L|1|0.43|ENSG00000176979|chr4:165041227-165041227|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.780517578125	2	486.779285	971.544017	0.63816	0.00031064	2.8063	0.001366	3.4445	0.0016767	486.78057109198966	38.524	0.15858	38.524	38.415	38.574	0					9	5	2	0	0	0	0.33577	1	15093	15093		63.306	1.1989	1	98052			40717	23065	27253	27360	41235	41235					0.0571066179418267
SVLGISTPK	9	Unmodified	_SVLGISTPK_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2705993652344	2	451.271293	900.528032	-0.31422	-0.0001418	-0.11654	-5.2593E-05	-0.43076	-0.00019439	451.2712158472284	33.128	0.33696	33.128	33.001	33.338	0					25	15	2	0	0	0	0.25761	1	10723	10723		54.722	7.065	1	98548			40718	4956	27254	27361	41236	41236					0.07378955557283007
SVLGISTPK	9	Unmodified	_SVLGISTPK_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.27117919921875	2	451.271293	900.528032	-0.50082	-0.00022601	-0.08754	-3.9504E-05	-0.58836	-0.00026551	451.27131065975846	33.38	0.48627	33.38	33.173	33.659	0					32	12	4	0	0	0	0.095583	1	12291	12291		80.455	16.247	1	740930			40719	4956	27254	27361	41237	41237					0.07378955557283007
SVLGISTPK	9	Unmodified	_SVLGISTPK_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2707824707031	2	451.271293	900.528032	-1.1905	-0.00053726	0.47347	0.00021366	-0.71708	-0.0003236	451.2715879851734	33.193	0.29736	33.193	33.051	33.348	0					21	12	3	0	0	0	0.16806	1	11099	11099		65.465	5.3471	1	128320			40720	4956	27254	27361	41238	41238					0.07378955557283007
SVLGISTPK	9	Unmodified	_SVLGISTPK_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.270751953125	2	451.271293	900.528032	0.70308	0.00031728	-1.1056	-0.00049893	-0.40254	-0.00018166	451.2707712826845	33.394	0.44141	33.394	33.176	33.618	0					24	10	4	0	0	0	0.095583	1	12727	12727		80.455	10.827	1	989820			40721	4956	27254	27361	41239	41239					0.07378955557283007
SVLGKDEQINK	11	Unmodified	_SVLGKDEQINK_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	615.838623046875	2	615.838059	1229.66157	-0.61528	-0.00037891	1.0771	0.0006633	0.46179	0.00028439	615.8387819907044	22.677	0.17774	22.677	22.548	22.726	0					11	4	4	0	0	0	7.5003E-05	1	7394	7394		147.3	37.474	1	754820			40722	7475	27255	27362	41240	41240					0.05592149872313712
SVLGKDEQINK	11	Unmodified	_SVLGKDEQINK_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	615.8383178710938	2	615.838059	1229.66157	-0.65326	-0.0004023	0.30534	0.00018804	-0.34791	-0.00021426	615.8382555025141	22.361	0.081249	22.361	22.326	22.407	0					4	2	2	0	0	0	0.050009	1	6578	6578		105.17	19.303	1	101210			40723	7475	27255	27362	41241	41241					0.05592149872313712
SVLGLLLKK	9	Unmodified	_SVLGLLLKK_					0	0	0		DUSP6|p.G169Pfs*6|1|0.33|ENSG00000139318|chr12:89350920-89350921|CC/-|frameshift_variant;nc|ENSG00000139318|Q16828-2|DUSP6;DUSP6|p.F272Sfs*8|1|0.32|ENSG00000139318|chr12:89350611-89350611|A/-|frameshift_variant;ENSG00000139318|ENST00000279488|DUSP6	DUSP6|p.G169Pfs*6|1|0.33|ENSG00000139318|chr12:89350920-89350921|CC/-|frameshift_variant	DUSP6|p.G169Pfs*6|1|0.33|ENSG00000139318|chr12:89350920-89350921|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.8360595703125	2	485.836603	969.658653	-0.26682	-0.00012963	-0.55245	-0.0002684	-0.81927	-0.00039803	485.8363565549661	41.921	0.15199	41.921	41.852	42.004	0					12	7	2	0	0	0	0.53083	1	15925	15925		29.15	0	1	79474			40724	858	27256	27363	41242	41242					0.17260971276130022
SVLGQAMEK	9	Unmodified	_SVLGQAMEK_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7521667480469	2	481.75241	961.490267	-0.11435	-5.509E-05	-0.040564	-1.9542E-05	-0.15492	-7.4632E-05	481.7522495278277	28.965	0.21359	28.965	28.874	29.087	0					11	5	3	0	0	0	0.054723	1	10300	10300		93.598	11.357	1	380170			40725	925	27257	27364	41243	41243					0.007981213001585274
SVLGQAMEK	9	Unmodified	_SVLGQAMEK_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7519836425781	2	481.75241	961.490267	-1.3316	-0.00064149	3.5154	0.0016936	2.1839	0.0010521	481.75265153136525	28.755	0.23612	28.755	28.621	28.857	0					19	9	3	0	0	0	0.04067	1	9281	9281		98.582	8.2122	1	524630			40726	925	27257	27364	41244	41244					0.007981213001585274
SVLGQAMEK	9	Unmodified	_SVLGQAMEK_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.75286865234375	2	481.75241	961.490267	0.68947	0.00033215	2.0114	0.00096902	2.7009	0.0013012	481.75210948781114	28.968	0.38841	28.968	28.863	29.251	0					13	8	2	0	0	0	0.014413	1	10684	10684		131.62	26.87	1	3589400			40727	925	27257	27364	41245	41245					0.007981213001585274
SVLGQAMEK	9	Unmodified	_SVLGQAMEK_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.75189208984375	2	481.75241	961.490267	-2.9221	-0.0014077	2.1093	0.0010162	-0.81275	-0.00039154	481.7533016175629	28.745	0.34629	28.745	28.665	29.012	0					11	8	2	0	0	0	0.11411	1	9588	9588		76.17	19.449	1	559590			40728	925	27257	27364	41246	41246					0.007981213001585274
SVLGQAMEK	9	Unmodified	_SVLGQAMEK_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.75201416015625	2	481.75241	961.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.906	1	28.906	28.406	29.406	0								0	0	0	0.0052769	1	10527	10527		114.89	21.699	1				40729	925	27257	27364	41247	41247					0.007981213001585274
SVLGQLGITK	10	Unmodified	_SVLGQLGITK_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.31060791015625	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.398	1	41.398	40.898	41.898	0								0	0	0	0.39816	1	13273	13273		32.751	10.791	1				40730	7440	27258	27365	41248	41248					0.10062602511402474
SVLGQLGITK	10	Unmodified	_SVLGQLGITK_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.3111267089844	2	508.310949	1014.60735	-0.025281	-1.2851E-05	0.13783	7.0061E-05	0.11255	5.7211E-05	508.3109438628887	41.675	0.24059	41.675	41.595	41.836	0					28	12	3	0	0	0	0.25862	1	15814	15814		77.533	38.28	1	614040			40731	7440	27258	27365	41249	41249					0.10062602511402474
SVLGQLGITK	10	Unmodified	_SVLGQLGITK_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3109436035156	2	508.310949	1014.60735	-0.57731	-0.00029346	0.11056	5.6197E-05	-0.46676	-0.00023726	508.31115344106513	41.461	0.19646	41.461	41.385	41.582	0					18	11	3	0	0	0	0.18851	1	13769	13769		86.189	13.31	1	193790			40732	7440	27258	27365	41250	41250					0.10062602511402474
SVLGQLGITK	10	Unmodified	_SVLGQLGITK_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.3108825683594	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.453	1	41.453	40.953	41.953	0								0	0	0	0.14667	1	14611	14611		58.63	12.173	1				40733	7440	27258	27365	41251	41251					0.10062602511402474
SVLGQLGITK	10	Unmodified	_SVLGQLGITK_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.3109130859375	2	508.310949	1014.60735	-1.8932	-0.00096235	1.7792	0.00090437	-0.11407	-5.7983E-05	508.3117936953561	41.433	0.21148	41.433	41.336	41.547	0					15	12	2	0	0	0	0.35294	1	14596	14596		65.278	34.96	1	85606			40734	7440	27258	27365	41252	41252					0.10062602511402474
SVLGQLGITK	10	Unmodified	_SVLGQLGITK_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3108215332031	2	508.310949	1014.60735	1.3166	0.00066926	-1.5674	-0.00079673	-0.25077	-0.00012747	508.31022183984027	41.56	0.41267	41.56	41.477	41.889	0					23	11	4	0	0	0	0.0057636	1	16548	16548		176.6	61.74	1	1449500			40735	7440	27258	27365	41253	41253					0.10062602511402474
SVLGVGALL	9	Unmodified	_SVLGVGALL_					0	0	0			REV__ENST00000519655.6_1_8:90769440-90769893:-|nuORF	REV__ENST00000519655.6_1_8:90769440-90769893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.7632751464844	2	414.763104	827.511654	-0.3744	-0.00015529	0.29715	0.00012325	-0.077244	-3.2038E-05	414.76325860362823	35.988	0.2169	35.988	35.881	36.098	0					9	4	3	0	0	0	0.30268	1	13934	13934		50.025	0	1	141760	+		40736	19941	27259	27366	41254	41254					0.09099874391188223
SVLGVKSIE	9	Unmodified	_SVLGVKSIE_					0	0	0			REV__SLC17A7|p.I357Nfs*105|1|0.22|ENSG00000104888|chr19:49432599-49432600|-/T|frameshift_variant	REV__SLC17A7|p.I357Nfs*105|1|0.22|ENSG00000104888|chr19:49432599-49432600|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2817687988281	2	466.276575	930.538597	0.6635	0.00030938	-0.05435	-2.5342E-05	0.60915	0.00028403	466.27659131455226	32.28	0.9351	32.28	31.795	32.73	0					43	21	5	0	0	0	0.098791	1	12395	12395		79.713	5.4575	1	5376500	+		40737	13744	27260	27367	41255	41255					0.07054938211706485
SVLGVTVTR	9	Unmodified	_SVLGVTVTR_					0	0	0		DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant;ENSG00000151240|ENST00000280886|DIP2C	DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2811584472656	2	466.282192	930.549831	-0.91164	-0.00042508	-2.0849	-0.00097215	-2.9965	-0.0013972	466.28138882468585	32.374	0.091557	32.374	32.298	32.39	0					7	4	2	0	0	0	0.30841	1	10790	10790		49.536	5.1589	1	56661			40738	790	27261	27368	41256	41256					0.08177760305841275
SVLHGMVFK	9	Unmodified	_SVLHGMVFK_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2807312011719	2	509.281137	1016.54772	0.21144	0.00010768	0.53826	0.00027412	0.7497	0.00038181	509.28137418728573	32.619	0.21539	32.619	32.567	32.782	0					6	5	2	0	0	0	0.2873	1	12423	12423		51.335	5.3632	1	57913			40739	5164	27262	27369	41257	41257					0.04011008296390628
SVLHGMVFK	9	Unmodified	_SVLHGMVFK_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2810363769531	2	509.281137	1016.54772	-0.047892	-2.4391E-05	0.47052	0.00023963	0.42263	0.00021524	509.28133835864327	32.618	0.21458	32.618	32.523	32.737	0					7	4	2	0	0	0	0.17854	2	12336	12312;12336		64.207	19.83	1	153380			40740	5164	27262	27369	41258;41259	41259					0.04011008296390628
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	602.3765258789062	2	602.376623	1202.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.452	1	32.452	31.952	32.952	0								0	0	0	0.16384	1	10494	10494		65.465	26.213	1				40741	7746	27263	27370	41260	41260					0.14543412879288553
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.3768920898438	2	602.376623	1202.73869	-0.2924	-0.00017614	0.78895	0.00047524	0.49654	0.00029911	602.3771389649263	32.705	0.25417	32.705	32.611	32.865	0					15	6	3	0	0	0	0.078327	1	12039	12039		88.177	26.486	1	466840			40742	7746	27263	27370	41261	41261					0.14543412879288553
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.8788452148438	2	602.376623	1202.73869	-0.58788	-0.00035413	1.2066	0.00072685	0.61875	0.00037272	602.3775133011449	32.523	0.20412	32.523	32.411	32.615	0					16	8	3	0	0	0	0.21577	1	10829	10829		65.465	19.493	1	181870			40743	7746	27263	27370	41262	41262					0.14543412879288553
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	402.25390625	3	401.920174	1202.73869	-1.3395	-0.00053838	1.1559	0.00046457	-0.18364	-7.381E-05	401.92068994949466	32.523	0.20412	32.523	32.411	32.615	0					16	8	3	0	0	0	0.61238	1	10831	10831		32.751	11.065	1	404650			40744	7746	27263	27370	41263	41263					0.14543412879288553
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	602.3766479492188	2	602.376623	1202.73869	0.80673	0.00048595	-0.31395	-0.00018912	0.49277	0.00029684	602.3763334790118	32.664	0.32985	32.664	32.555	32.885	0					26	8	4	0	0	0	0.062358	1	12435	12435		104.01	37.052	1	1355200			40745	7746	27263	27370	41264	41264					0.14543412879288553
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.91998291015625	3	401.920174	1202.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.644	1	32.644	32.144	33.144	0								0	0	0	0.2634	1	12329	12329		56.434	18.926	1				40746	7746	27263	27370	41265	41265					0.14543412879288553
SVLIQRLGK	9	Unmodified	_SVLIQRLGK_					0	0	0		CNTNAP4|p.Q397Nfs*18|1|0.17|ENSG00000152910|chr16:76452621-76452621|T/-|frameshift_variant;CNTNAP4|p.F657Sfs*42|1|0.3|ENSG00000152910|chr16:76489769-76489769|T/-|frameshift_variant;CNTNAP4|p.N1023Tfs*13|1|0.46|ENSG00000152910|chr16:76538184-76538184|A/-|frameshift_variant;nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4	CNTNAP4|p.Q397Nfs*18|1|0.17|ENSG00000152910|chr16:76452621-76452621|T/-|frameshift_variant	CNTNAP4|p.Q397Nfs*18|1|0.17|ENSG00000152910|chr16:76452621-76452621|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.5536193847656	3	338.553715	1012.63931	0.53138	0.0001799	-0.64144	-0.00021716	-0.11006	-3.7262E-05	338.5534816825206	19.102	0.43702	19.102	18.777	19.214	0					26	9	4	0	0	0	0.61124	1	5922	5922		37.812	14.289	1	1367600			40747	582	27264	27371	41266	41266					0.1335001498522388
SVLKENSLPK	10	Unmodified	_SVLKENSLPK_					0	0	0		ENST00000477448.1_1_6:107811820-107879187:+|nuORF;SOBP|p.P463Rfs*31|1|0.33|ENSG00000112320|chr6:107634227-107634227|C/-|frameshift_variant;ENSG00000112320|ENST00000317357|SOBP	ENST00000477448.1_1_6:107811820-107879187:+|nuORF	ENST00000477448.1_1_6:107811820-107879187:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8279418945312	2	557.826963	1113.63937	-0.48369	-0.00026982	0.77185	0.00043056	0.28816	0.00016074	557.827483435488	23.88	0.49528	23.88	23.558	24.053	0					38	17	3	0	0	0	0.74178	1	7121	7121		9.7057	1.012	1	276120			40748	2735	27265	27372	41267	41267					0.08709970194558991
SVLKEYNLK	9	Unmodified	_SVLKEYNLK_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.31787109375	2	547.316232	1092.61791	1.6743	0.00091638	-0.015761	-8.6261E-06	1.6586	0.00090776	547.8174183375467	27.355	0.11288	27.355	27.298	27.411	0					6	4	2	0	0	0	0.37744	1	8417	8417		36.447	0	1	60291			40749	11468	27266	27373	41268	41268					0.07530585165818593
SVLKEYNLK	9	Unmodified	_SVLKEYNLK_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.3168334960938	2	547.316232	1092.61791	1.8539	0.0010147	-0.64215	-0.00035146	1.2117	0.0006632	547.3158761993203	27.586	0.21899	27.586	27.501	27.72	0					14	5	4	0	0	0	0.0079272	1	9650	9650		129.42	67.314	1	492650			40750	11468	27266	27373	41269	41269					0.07530585165818593
SVLKEYNLK	9	Unmodified	_SVLKEYNLK_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.3172607421875	2	547.316232	1092.61791	0.44489	0.0002435	1.0632	0.00058191	1.5081	0.0008254	547.3163296590462	27.359	0.12233	27.359	27.296	27.418	0					5	4	2	0	0	0	0.14673	1	8706	8706		61.691	15.719	1	103160			40751	11468	27266	27373	41270	41270					0.07530585165818593
SVLKEYNLK	9	Unmodified	_SVLKEYNLK_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.3165893554688	2	547.316232	1092.61791	1.8921	0.0010356	-1.2833	-0.00070236	0.6088	0.00033321	547.3154800559913	27.551	0.22011	27.551	27.441	27.662	0					12	4	4	0	0	0	0.14578	1	9889	9889		71.877	17.101	1	577750			40752	11468	27266	27373	41271	41271					0.07530585165818593
SVLKFISVL	9	Unmodified	_SVLKFISVL_					0	0	0		ENST00000490738.5_1_1:6932031-6932076:+|nuORF	ENST00000490738.5_1_1:6932031-6932076:+|nuORF	ENST00000490738.5_1_1:6932031-6932076:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.8230895996094	2	503.320786	1004.62702	2.9283	0.0014739	-1.979	-0.00099609	0.94928	0.00047779	503.319791966748	51.034	0.071766	51.034	50.981	51.053	0					7	4	2	0	0	0	0.56424	1	20023	20023		25.574	2.5316	1	61085			40753	10065	27267	27374	41272	41272					0.12488978522173966
SVLKGAVTK	9	Unmodified	_SVLKGAVTK_					0	0	0		ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant;ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ZMYM6|p.L686Ifs*41|1|0.03|ENSG00000163867|chr1:34992324-34992325|-/GAAAGGAAAAGAAAAT|frameshift_variant;ZMYM6|p.N724Mfs*15|1|0.42|ENSG00000163867|chr1:34988911-34988911|T/-|frameshift_variant;ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.787353515625	2	451.78711	901.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.869	1	18.869	18.369	19.369	0								0	0	0	0.040385	1	4773	4773		90.601	16.346	1				40754	5614	27268	27375	41273	41273					0.10494948311236385
SVLKGAVTK	9	Unmodified	_SVLKGAVTK_					0	0	0		ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant;ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ZMYM6|p.L686Ifs*41|1|0.03|ENSG00000163867|chr1:34992324-34992325|-/GAAAGGAAAAGAAAAT|frameshift_variant;ZMYM6|p.N724Mfs*15|1|0.42|ENSG00000163867|chr1:34988911-34988911|T/-|frameshift_variant;ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7868347167969	2	451.78711	901.559667	-0.11092	-5.0112E-05	-0.18638	-8.4202E-05	-0.2973	-0.00013431	451.786965666004	19.091	0.11404	19.091	19.034	19.148	0					4	2	2	0	0	0	0.24334	1	5987	5987		56.434	5.0983	1	477360			40755	5614	27268	27375	41274	41274					0.10494948311236385
SVLKVPLLA	9	Unmodified	_SVLKVPLLA_					0	0	0			REV__ENST00000469163.1_1_22:45574133-45574268:+|nuORF	REV__ENST00000469163.1_1_22:45574133-45574268:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.3150939941406	2	470.315503	938.616454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.409	1	43.409	42.909	43.909	0								0	0	0	0.32356	1	16376	16376		30.504	1.3541	1		+		40756	19450	27269	27376	41275	41275					0.14468995867741796
SVLKWAPSGN	10	Unmodified	_SVLKWAPSGN_					0	0	0		VRK2|p.S283N|1|0.04|ENSG00000028116|chr2:58135191-58135191|G/A|missense_variant	VRK2|p.S283N|1|0.04|ENSG00000028116|chr2:58135191-58135191|G/A|missense_variant	VRK2|p.S283N|1|0.04|ENSG00000028116|chr2:58135191-58135191|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.78466796875	2	529.785099	1057.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.51	1	44.51	44.01	45.01	0								0	0	0	0.37602	1	17322	17322		37.812	1.3648	1				40757	23104	27270	27377	41276	41276					0.029168588175252808
SVLLAAPALA	10	Unmodified	_SVLLAAPALA_					0	0	0		ENST00000328914.4_1_7:4803200-4803701:+|nuORF	ENST00000328914.4_1_7:4803200-4803701:+|nuORF	ENST00000328914.4_1_7:4803200-4803701:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2873229980469	2	463.289485	924.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.492	1	56.492	55.992	56.992	0								0	0	0	0.4201	1	20142	20142		12.959	0.75233	1				40758	8662	27271	27378	41277	41277					0.0991183245398588
SVLLADQL	8	Unmodified	_SVLLADQL_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.74969482421875	2	429.750193	857.485833	-0.56918	-0.00024461	0.018233	7.8358E-06	-0.55095	-0.00023677	429.7502433543478	41.575	0.1459	41.575	41.512	41.658	0					12	7	2	0	0	0	0.32815	1	15799	15799		79.451	0	1	73398			40759	3022	27272	27379	41278	41278					0.05138980148910832
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.55859375	3	345.558466	1033.65357	0.38936	0.00013455	-0.13173	-4.552E-05	0.25763	8.9025E-05	345.55841700363385	33.977	0.29213	33.977	33.934	34.227	0					20	12	2	0	0	0	0.48623	1	11095	11095		33.922	9.4024	1	372880			40760	7543	27273	27380	41279	41279					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.8341674804688	2	517.83406	1033.65357	0.42881	0.00022205	0.055078	2.8521E-05	0.48389	0.00025057	517.8339952837518	34.01	0.65263	34.01	33.911	34.564	0					77	29	5	0	0	0	0.14578	1	11073	11073		62.107	19.711	1	4279700			40761	7543	27273	27380	41280	41280					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.5583801269531	3	345.558466	1033.65357	0.686	0.00023705	-0.61803	-0.00021356	0.067973	2.3489E-05	345.5582142133151	34.298	0.40202	34.298	34.181	34.583	0					32	10	4	0	0	0	0.17062	1	12756	12756		65.157	25.099	1	2447200			40762	7543	27273	27380	41281	41281					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.8346557617188	2	517.83406	1033.65357	0.049247	2.5502E-05	0.3103	0.00016068	0.35954	0.00018618	517.8340939835718	34.293	1.8867	34.293	34.17	36.057	0					116	49	5	0	0	0	0.0059342	2	12732	12732;12892		150.36	79.066	1	24232000			40763	7543	27273	27380	41282;41283	41282					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.5586242675781	3	345.558466	1033.65357	3.6392	0.0012576	-3.1227	-0.0010791	0.51654	0.00017849	345.5574354025857	34.113	0.14634	34.113	34.009	34.155	0					8	5	2	0	0	0	0.38666	1	11494	11494		42.864	8.9426	1	61888			40764	7543	27273	27380	41284	41284					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.8341064453125	2	517.83406	1033.65357	0.15881	8.2235E-05	0.11964	6.1952E-05	0.27844	0.00014419	517.8340591428421	34.089	0.40211	34.089	33.996	34.399	0					48	17	4	0	0	0	0.0043467	1	11471	11471		171.53	112.75	1	1374300			40765	7543	27273	27380	41285	41285					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	345.5585021972656	3	345.558466	1033.65357	0.34596	0.00011955	-0.43394	-0.00014995	-0.087985	-3.0404E-05	345.55837538967234	34.282	0.36942	34.282	34.146	34.515	0					16	9	3	0	0	0	0.36135	1	13189	13189		45.022	4.964	1	233850			40766	7543	27273	27380	41286	41286					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.8343505859375	2	517.83406	1033.65357	1.5494	0.00080233	-0.70732	-0.00036627	0.84208	0.00043606	517.8335931463657	34.307	0.25325	34.307	34.213	34.466	0					15	6	3	0	0	0	0.13907	1	13221	13221		72.879	46.083	1	632510			40767	7543	27273	27380	41287	41287					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.55889892578125	3	345.558466	1033.65357	0.48549	0.00016776	-0.036985	-1.278E-05	0.4485	0.00015498	345.55846653430797	34.014	0.21656	34.014	33.972	34.188	0					16	6	3	0	0	0	0.25761	1	12004	12004		54.722	20.801	1	121180			40768	7543	27273	27380	41288	41288					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.5585021972656	3	345.558466	1033.65357	-0.065703	-2.2704E-05	-0.19485	-6.733E-05	-0.26055	-9.0034E-05	345.5583661218411	34.031	0.21202	34.031	33.961	34.173	0					14	6	3	0	0	0	0.3269	1	11998	11998		47.96	6.5329	1	363580			40769	7543	27273	27380	41289	41289					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENST00000578593.1_1_17:61889231-61895755:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.55841064453125	3	345.558466	1033.65357	-0.034645	-1.1972E-05	-0.095444	-3.2982E-05	-0.13009	-4.4953E-05	345.55839678952816	34.253	0.45353	34.253	34.101	34.555	0					25	9	4	0	0	0	0.18416	1	13096	13096		63.534	24.78	1	1911100			40770	7543	27273	27380	41290	41290					0.1380866741351383
SVLLGLQQL	9	Unmodified	_SVLLGLQQL_					0	0	0			REV__nc|ENSG00000090659|Q9NNX6-8|CD209	REV__nc|ENSG00000090659|Q9NNX6-8|CD209	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.80029296875	2	485.800217	969.585882	-0.66991	-0.00032544	0.087911	4.2707E-05	-0.58199	-0.00028273	485.80031170937934	40.045	0.21831	40.045	39.923	40.141	0					12	7	2	0	0	0	0.15163	1	15750	15750		67.494	0	1	257550	+		40771	20951	27274	27381	41291	41291					0.09987217482705546
SVLLPLVAK	9	Unmodified	_SVLLPLVAK_					0	0	0		nc|ENSG00000140876|P0C024-3|NUDT7;nc|ENSG00000140876|P0C024-2|NUDT7;ENSG00000140876|ENST00000268533|NUDT7	nc|ENSG00000140876|P0C024-3|NUDT7	nc|ENSG00000140876|P0C024-3|NUDT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.3152160644531	2	470.315503	938.616454	0.60832	0.0002861	-0.88996	-0.00041856	-0.28164	-0.00013246	470.31505026185926	43.371	0.27321	43.371	43.246	43.52	0					21	15	2	0	0	0	0.39215	1	16978	16978		42.396	6.7778	1	97580			40772	4412	27275	27382	41292	41292					0.14468995867741796
SVLLPMPVL	9	Unmodified	_SVLLPMPVL_					0	0	0			REV__ENSG00000236699|ENST00000420470|ARHGEF38	REV__ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.7982177734375	2	484.796089	967.577625	2.4669	0.001196	0.94544	0.00045834	3.4124	0.0016543	484.7966248867881	35.906	0.51275	35.906	35.552	36.064	0					16	10	2	0	0	0	0.39123	1	13895	13895		42.474	0	1	1112900	+		40773	17666	27276	27383	41293	41293					0.09253947241722926
SVLLWIAVA	9	Unmodified	_SVLLWIAVA_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2980651855469	2	486.299853	970.585153	-2.9132	-0.0014167	-1.427	-0.00069393	-4.3402	-0.0021106	486.29909875594683	20.363	0.14382	20.363	20.251	20.395	0					5	3	2	0	0	0	0.16002	1	5711	5711		40.573	0	1	98037			40774	3298	27277	27384	41294	41294					0.09868422833642398
SVLNFATNR	9	Unmodified	_SVLNFATNR_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.27484130859375	2	511.274898	1020.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.507	1	35.507	35.007	36.007	0								0	0	0	0.25045	1	13764	13764		43.651	1.2547	1				40775	3766	27278	27385	41295	41295					0.025796881576980013
SVLNIAREK	9	Unmodified	_SVLNIAREK_					0	0	0		nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF;nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B;ANKRD36C|p.F1404Lfs*4|1|0.33|ENSG00000174501|chr2:95856049-95856049|A/-|frameshift_variant;nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3064575195312	2	515.306198	1028.59784	0.028898	1.4891E-05	0.50048	0.0002579	0.52938	0.00027279	515.3065012524538	25.37	0.26588	25.37	25.275	25.541	0					14	6	3	0	0	0	0.01942	1	8666	8666		122.94	24.31	1	1250900			40776	160	27279	27386	41296	41296					0.08468834225891442
SVLNIAREK	9	Unmodified	_SVLNIAREK_					0	0	0		nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF;nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B;ANKRD36C|p.F1404Lfs*4|1|0.33|ENSG00000174501|chr2:95856049-95856049|A/-|frameshift_variant;nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3074951171875	2	515.306198	1028.59784	0.058828	3.0314E-05	-0.15368	-7.9191E-05	-0.09485	-4.8877E-05	515.8071495216655	25.125	0.14278	25.125	25.046	25.189	0					6	4	2	0	0	0	0.28897	1	7767	7767		51.193	3.5354	1	95609			40777	160	27279	27386	41297	41297					0.08468834225891442
SVLNIAREK	9	Unmodified	_SVLNIAREK_					0	0	0		nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF;nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B;ANKRD36C|p.F1404Lfs*4|1|0.33|ENSG00000174501|chr2:95856049-95856049|A/-|frameshift_variant;nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3065185546875	2	515.306198	1028.59784	-0.49964	-0.00025747	0.89023	0.00045874	0.39059	0.00020127	515.306745444251	25.335	0.1685	25.335	25.273	25.442	0					7	3	3	0	0	0	0.026848	1	8988	8988		112.11	21.506	1	369450			40778	160	27279	27386	41298	41298					0.08468834225891442
SVLNIPMAK	9	Unmodified	_SVLNIPMAK_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7805480957031	2	486.78097	971.547388	0.81987	0.0003991	-1.5701	-0.00076431	-0.75025	-0.00036521	486.78018739600213	38.44	0.29304	38.44	38.3	38.594	0					15	6	3	0	0	0	0.1424	1	15124	15124		69.628	21.97	1	303220			40779	7514	27280	27387	41299	41299					0.060475885765413295
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.826171875	2	492.826235	983.637917	-0.20343	-0.00010025	0.22669	0.00011172	0.023266	1.1466E-05	492.8263086779618	45.649	0.21609	45.649	45.567	45.783	0					22	13	2	0	0	0	0.026538	1	14152	14152		112.41	35.093	1	546800			40780	4145	27281	27388	41300	41300					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.8262023925781	2	492.826235	983.637917	3.0946	0.0015251	-1.9601	-0.00096601	1.1344	0.00055907	492.82497762346577	45.675	0.069321	45.675	45.625	45.694	0					6	4	2	0	0	0	0.012231	1	14684	14684		136.27	29.261	1	36318			40781	4145	27281	27388	41301	41301					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.8263244628906	2	492.826235	983.637917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.661	1	45.661	45.161	46.161	0								0	0	0	0.18645	1	14679	14679		52.937	8.8199	1				40782	4145	27281	27388	41302	41302					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.82659912109375	2	492.826235	983.637917	-0.054234	-2.6728E-05	0.96233	0.00047426	0.90809	0.00044753	492.8266414479678	45.89	0.22858	45.89	45.803	46.032	0					32	13	3	0	0	0	0.022525	1	17694	17694		117.81	38.098	1	391420			40783	4145	27281	27388	41303	41303					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.8267822265625	2	492.826235	983.637917	0.60887	0.00030006	-0.67893	-0.00033459	-0.07006	-3.4527E-05	492.8258693113033	45.921	0.33096	45.921	45.782	46.113	0					53	19	4	0	0	0	0.0012088	1	17697	17697		180.87	70.75	1	1695100			40784	4145	27281	27388	41304	41304					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.32781982421875	2	492.826235	983.637917	0.36502	0.00017989	0.35106	0.00017301	0.71608	0.0003529	492.8262882361516	45.642	0.2084	45.642	45.594	45.803	0					27	12	3	0	0	0	0.022525	1	15512	15512		117.81	32.65	1	160330			40785	4145	27281	27388	41305	41305					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.8270568847656	2	492.826235	983.637917	-0.011407	-5.6215E-06	0.59362	0.00029255	0.58221	0.00028693	492.826441482373	45.675	0.24202	45.675	45.605	45.847	0					29	14	3	0	0	0	0.026538	1	15515	15515		112.41	40.533	1	586070			40786	4145	27281	27388	41306	41306					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.8264465332031	2	492.826235	983.637917	-0.60178	-0.00029657	0.23027	0.00011348	-0.37151	-0.00018309	492.82633725690215	45.845	0.44371	45.845	45.705	46.149	0					56	20	4	0	0	0	0.00026591	1	18341	18341		190.26	55.451	1	3180800			40787	4145	27281	27388	41307	41307					0.14544380896461462
SVLNLVIVKK	10	Unmodified	_SVLNLVIVKK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.5848693847656	3	371.584903	1111.73288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.699	1	37.699	37.199	38.199	0								0	0	0	0.4201	1	14311	14311		20.03	3.3131	1				40788	4145	27282	27389	41308	41308					0.18148314367635976
SVLNLVIVKK	10	Unmodified	_SVLNLVIVKK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.8740234375	2	556.873717	1111.73288	0.55849	0.00031101	0.45172	0.00025155	1.0102	0.00056256	556.8738380353676	37.702	0.21979	37.702	37.628	37.848	0					15	7	3	0	0	0	0.01554	1	14300	14300		117.81	56.12	1	426350			40789	4145	27282	27389	41309	41309					0.18148314367635976
SVLNLVIVKK	10	Unmodified	_SVLNLVIVKK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.87451171875	2	556.873717	1111.73288	-0.14929	-8.3138E-05	1.5662	0.00087218	1.4169	0.00078904	556.8746935088333	37.658	0.26546	37.658	37.58	37.846	0					13	8	2	0	0	0	0.24329	1	14742	14742		71.877	36.259	1	130380			40790	4145	27282	27389	41310	41310					0.18148314367635976
SVLNLVIVKK	10	Unmodified	_SVLNLVIVKK_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.58477783203125	3	371.584903	1111.73288	0.79762	0.00029638	-0.8482	-0.00031518	-0.050573	-1.8792E-05	371.5845769906922	37.601	0.45341	37.601	37.45	37.904	0					25	9	4	0	0	0	0.23114	1	14704	14704		75.652	38.052	1	1195000			40791	4145	27282	27389	41311	41311					0.18148314367635976
SVLNSSNIL	9	Unmodified	_SVLNSSNIL_					0	0	0		ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.76373291015625	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.812	1	26.812	26.312	27.312	0								0	0	0	0.25587	1	8474	8474		42.864	0.38981	1				40792	6933	27283	27390	41312	41312					0.03817463689279066
SVLNVAALLA	10	Unmodified	_SVLNVAALLA_					0	0	0		RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF	RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant	RSRC2|p.R335Gfs*23|1|0.06|ENSG00000111011|chr12:122508250-122508250|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.80029296875	2	485.800217	969.585882	-0.022846	-1.1098E-05	-0.010975	-5.3316E-06	-0.033821	-1.643E-05	485.80026990542103	39.627	0.21855	39.627	39.521	39.74	0					16	12	2	0	0	0	0.46215	1	12848	12848		49.442	3.4693	1	210860			40793	22363	27284	27391	41313	41313					0.09987217482694177
SVLPKASTL	9	Unmodified	_SVLPKASTL_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF;ENSG00000146247|ENST00000275034|PHIP	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2787170410156	2	458.279118	914.543683	0.72222	0.00033098	-3.3169	-0.0015201	-2.5947	-0.0011891	458.2785791565128	37.847	0.21701	37.847	37.747	37.964	0					14	7	3	0	0	0	0.39215	1	14836	14836		42.396	8.2236	1	58046			40794	4720	27285	27392	41314	41314					0.08299242074338053
SVLPRSPADE	10	Unmodified	_SVLPRSPADE_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.779541015625	2	535.77747	1069.54039	3.3593	0.0017998	0.71002	0.00038041	4.0693	0.0021803	535.7778044784405	23.209	0.31818	23.209	23.1	23.418	0					20	6	4	0	0	0	0.26198	1	7847	7847		71.877	4.3838	1	4509800			40795	4172	27286	27393	41315	41315					0.008399472296559907
SVLPSPAHA	9	Unmodified	_SVLPSPAHA_					0	0	0		nc|ENSG00000197046|Q6ZMC9-2|SIGLEC15;ENSG00000197046|ENST00000389474|SIGLEC15	nc|ENSG00000197046|Q6ZMC9-2|SIGLEC15	nc|ENSG00000197046|Q6ZMC9-2|SIGLEC15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.7393493652344	2	439.74016	877.465767	0.56564	0.00024873	-1.2121	-0.00053301	-0.64646	-0.00028428	439.73970407036603	34.146	0.61991	34.146	33.806	34.426	0					30	16	3	0	0	0	0.35045	1	12655	12655		45.952	3.5558	1	189080			40796	7418	27287	27394	41316	41316					0.022132292089395378
SVLPYFVATK	10	Unmodified	_SVLPYFVATK_					0	0	0		ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF;ENSG00000149084|ENST00000278353|HSD17B12	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.821533203125	2	562.82115	1123.62775	1.7682	0.00099515	-0.88975	-0.00050077	0.87841	0.00049439	562.8204536609127	43.721	0.1861	43.721	43.661	43.848	0					11	5	3	0	0	0	0.50287	1	17507	17507		45.022	13.492	1	125450			40797	4858	27288	27395	41317	41317					0.07087773171224399
SVLQECEKK	9	Unmodified	_SVLQECEKK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2763671875	2	532.276249	1062.53795	0.12346	6.5712E-05	-0.012899	-6.866E-06	0.11056	5.8846E-05	532.2762464731977	22.801	0.25517	22.801	22.714	22.969	0					10	6	2	0	0	0	0.012231	1	7466	7466		136.27	8.8064	1	808860			40798	6411	27289	27396	41318	41318					0.00917775500352036
SVLQECEKK	9	Unmodified	_SVLQECEKK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.276123046875	2	532.276249	1062.53795	0.28856	0.0001536	-0.36206	-0.00019272	-0.073497	-3.9121E-05	532.2760964654706	22.736	0.21713	22.736	22.628	22.845	0					7	4	2	0	0	0	0.0071053	1	7725	7725		148.99	21.525	1	419270			40799	6411	27289	27396	41319	41319					0.00917775500352036
SVLQGDAK	8	Unmodified	_SVLQGDAK_					0	0	0			REV__nc|ENSG00000185404|Q9H930-1|SP140L	REV__nc|ENSG00000185404|Q9H930-1|SP140L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.2244567871094	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.03	1	16.03	15.53	16.53	0								0	0	0	1.7419	1	3583	3583		29.15	0	1		+		40800	17024	27290	27397	41320	41320					0.018572364549982012
SVLQGLLKK	9	Unmodified	_SVLQGLLKK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.2182922363281	3	329.218332	984.633166	0.38955	0.00012825	-0.43216	-0.00014228	-0.042614	-1.4029E-05	329.21817108480775	33.803	0.33746	33.803	33.69	34.028	0					13	8	2	0	0	0	0.41113	1	12943	12943		56.434	10.462	1	235850			40801	3270	27291	27398	41321	41321					0.14023496753691234
SVLQKVVGK	9	Unmodified	_SVLQKVVGK_					0	0	0		ENST00000555044.5_2_14:74364914-74371672:+|nuORF;ENST00000541357.6_1_14:74360502-74371669:+|nuORF	ENST00000555044.5_2_14:74364914-74371672:+|nuORF	ENST00000555044.5_2_14:74364914-74371672:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.3081970214844	2	479.30821	956.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.583	1	25.583	25.083	26.083	0								0	0	0	0.13425	1	7975	7975		63.534	8.7575	1				40802	10544	27292	27399	41322	41322					0.12182923719615246
SVLRAAAGTAI	11	Unmodified	_SVLRAAAGTAI_					0	0	0			REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.3070068359375	2	515.306198	1028.59784	0.1722	8.8737E-05	1.4102	0.00072669	1.5824	0.00081542	515.307046066586	25.06	0.17425	25.06	24.977	25.152	0					7	5	2	0	0	0	0.32407	1	7507	7507		59.931	4.8469	1	142150	+		40803	13171	27293	27400	41323	41323					0.08468834225868704
SVLRGLELTE	10	Unmodified	_SVLRGLELTE_					0	0	0			REV__nc|ENSG00000278848|Q9ULZ0-3|TP53TG3	REV__nc|ENSG00000278848|Q9ULZ0-3|TP53TG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.8802185058594	3	372.880156	1115.61864	0.46877	0.00017479	-0.67152	-0.0002504	-0.20275	-7.5603E-05	372.8799921545034	21.151	0.26218	21.151	21.045	21.307	0					17	5	4	0	0	0	0.62235	1	6978	6978		29.551	0.97402	1	12858000	+		40804	16943	27294	27401	41324	41324					0.06545379814906482
SVLRRFST	8	Unmodified	_SVLRRFST_					0	0	0		ENST00000486327.6_1_19:47879673-47879823:+|nuORF	ENST00000486327.6_1_19:47879673-47879823:+|nuORF	ENST00000486327.6_1_19:47879673-47879823:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2790832519531	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.875	1	22.875	22.375	23.375	0								0	0	0	1.7419	1	6536	6536		29.15	2.3535	1				40805	10019	27295	27402	41325	41325					0.06172295882936396
SVLRSFRVAK	10	Unmodified	_SVLRSFRVAK_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.23992919921875	3	388.240018	1161.69823	0.73152	0.00028401	-0.51336	-0.00019931	0.21816	8.4698E-05	388.2398217325961	25.249	0.24018	25.249	25.164	25.404	0					6	5	2	0	0	0	0.54861	1	8600	8600		40.058	11.977	1	47076			40806	5653	27296	27403	41326	41326					0.12384491279544818
SVLSAVWSI	9	Unmodified	_SVLSAVWSI_					0	0	0		ENST00000587789.2_1_19:55670919-55671346:-|nuORF	ENST00000587789.2_1_19:55670919-55671346:-|nuORF	ENST00000587789.2_1_19:55670919-55671346:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2724914550781	2	481.271293	960.528032	-1.3475	-0.00064851	0.99547	0.00047909	-0.35202	-0.00016942	481.273324620487	28.598	0.35258	28.598	28.347	28.7	0					23	13	3	0	0	0	0.16002	1	9235	9235		66.429	2.222	1	147640			40807	10915	27297	27404	41327	41327					0.04618955557270965
SVLSELLNK	9	Unmodified	_SVLSELLNK_					0	0	0		sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1;sp|P08546|DPOL_HCMVADNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL54PE=1SV=2	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7942810058594	2	501.795132	1001.57571	0.69099	0.00034673	-1.5993	-0.00080254	-0.90835	-0.0004558	501.7943566691164	39.009	0.19949	39.009	38.897	39.097	0					15	7	3	0	0	0	0.50858	1	14859	14859		31.53	1.2121	1	201680			40808	22462	27298	27405	41328	41328					0.07498609757476515
SVLSGGKAK	9	Unmodified	_SVLSGGKAK_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B;ENST00000491294.1_1_7:98988810-98991817:+|nuORF	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.755615234375	2	423.75581	845.497067	-0.21247	-9.0035E-05	-0.19336	-8.1939E-05	-0.40583	-0.00017197	423.7557695013937	15.274	0.15827	15.274	15.195	15.354	0					9	5	3	0	0	0	0.037569	1	3300	3300		101.6	10.824	1	538870			40809	3642	27299	27406	41329	41329					0.06813802243038936
SVLSGGKAK	9	Unmodified	_SVLSGGKAK_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B;ENST00000491294.1_1_7:98988810-98991817:+|nuORF	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.7557373046875	2	423.75581	845.497067	-0.81396	-0.00034492	0.44096	0.00018686	-0.37299	-0.00015806	423.7559605294766	15.579	0.17652	15.579	15.52	15.697	0					11	4	4	0	0	0	0.021961	1	4054	4054		118.74	27.966	1	1478800			40810	3642	27299	27406	41330	41330					0.06813802243038936
SVLSGGKAK	9	Unmodified	_SVLSGGKAK_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B;ENST00000491294.1_1_7:98988810-98991817:+|nuORF	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	423.755615234375	2	423.75581	845.497067	-0.96367	-0.00040836	0.59443	0.00025189	-0.36925	-0.00015647	423.75603651997	15.342	0.11222	15.342	15.262	15.374	0					7	3	3	0	0	0	0.026538	1	3469	3469		112.41	27.495	1	631500			40811	3642	27299	27406	41331	41331					0.06813802243038936
SVLSGGKAK	9	Unmodified	_SVLSGGKAK_					0	0	0		ENSG00000130429|ENST00000646101|ARPC1B;ENST00000491294.1_1_7:98988810-98991817:+|nuORF	ENSG00000130429|ENST00000646101|ARPC1B	ENSG00000130429|ENST00000646101|ARPC1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.7555847167969	2	423.75581	845.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.577	1	15.577	15.077	16.077	0								0	0	0	0.00042866	1	4287	4287		131.03	28.258	1				40812	3642	27299	27406	41332	41332					0.06813802243038936
SVLSLSGVM	9	Unmodified	_SVLSLSGVM_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.743896484375	2	446.744053	891.473554	-0.42923	-0.00019175	0.0017581	7.8543E-07	-0.42747	-0.00019097	446.74405341147974	33.06	0.13725	33.06	32.963	33.1	0					6	4	2	0	0	0	0.41354	1	11575	11575		40.573	6.4001	1	33580			40813	7097	27300	27407	41333	41333					0.023476204142184542
SVLSPLLNK	9	Unmodified	_SVLSPLLNK_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.80023193359375	2	485.800217	969.585882	0.018374	8.9262E-06	-0.56781	-0.00027584	-0.54943	-0.00026691	485.799956335775	39.729	0.23409	39.729	39.567	39.801	0					20	13	3	0	0	0	0.41113	1	12857	12857		40.778	1.5253	1	91600			40814	4968	27301	27408	41334	41334					0.09987217482705546
SVLSPLLNK	9	Unmodified	_SVLSPLLNK_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.800048828125	2	485.800217	969.585882	-0.26845	-0.00013041	-0.20889	-0.00010148	-0.47734	-0.00023189	485.800148103187	40.072	0.45366	40.072	39.815	40.269	0					40	17	3	0	0	0	0.28897	1	15195	15195		51.193	17.02	1	809770			40815	4968	27301	27408	41335	41335					0.09987217482705546
SVLSSGTQAV	10	Unmodified	_SVLSSGTQAV_					0	0	0		ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.75341796875	2	474.753464	947.492375	-0.2409	-0.00011437	-0.46086	-0.0002188	-0.70176	-0.00033316	474.7533581779882	17.052	0.31542	17.052	16.857	17.172	0					20	11	2	0	0	0	0.6796	1	3950	3950		24.519	2.8334	1	103140			40816	2981	27302	27409	41336	41336					0.01652873309626557
SVLSSHHKK	9	Unmodified	_SVLSSHHKK_					0	0	0		ENSG00000006831|ENST00000357103|ADIPOR2	ENSG00000006831|ENST00000357103|ADIPOR2	ENSG00000006831|ENST00000357103|ADIPOR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7906494140625	2	511.790715	1021.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.436	1	13.436	12.936	13.936	0								0	0	0	0.0537	1	3117	3117		85.161	30.385	1				40817	990	27303	27410	41337	41337					0.05695680911662748
SVLTAKGMA	9	Unmodified	_SVLTAKGMA_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.244140625	2	439.244221	876.473888	-0.28241	-0.00012405	0.25272	0.00011101	-0.02969	-1.3041E-05	439.24423834834244	27.937	0.11786	27.937	27.87	27.988	0					7	4	2	0	0	0	0.41113	1	8661	8661		40.778	5.1599	1	105080			40818	187	27304	27411	41338	41338					0.030710401340684257
SVLTGTQSLL	10	Unmodified	_SVLTGTQSLL_					0	0	0		ENST00000559530.1_1_15:32058089-32058740:-|nuORF	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7918395996094	2	509.792589	1017.57063	0.23213	0.00011834	-1.0105	-0.00051516	-0.77839	-0.00039682	509.7920708127932	23.785	0.14619	23.785	23.713	23.86	0					5	3	2	0	0	0	0.52275	1	7336	7336		42.864	1.4377	1	71388			40819	10680	27305	27412	41339	41339					0.06254305894856316
SVLTSKNQI	9	Unmodified	_SVLTSKNQI_					0	0	0		ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;DNAJC8|p.Q140Tfs*15|1|0.4|ENSG00000126698|chr1:28208395-28208396|-/T|frameshift_variant;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	ENST00000488868.1_1_1:28537058-28556683:-|nuORF	ENST00000488868.1_1_1:28537058-28556683:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.28466796875	2	495.284931	988.55531	-0.064085	-3.174E-05	-0.68255	-0.00033806	-0.74664	-0.0003698	495.28459976736707	24.284	0.13598	24.284	24.207	24.343	0					6	4	2	0	0	0	0.46194	1	7162	7162		36.447	4.9169	1	63577			40820	830	27306	27413	41340	41340					0.060574390976512404
SVLTVKLKQ	9	Unmodified	_SVLTVKLKQ_					0	0	0			REV__ERICH5|p.V67_S68insTLV|1|0.12|ENSG00000177459|chr8:98089214-98089215|-/AGTTACTTT|inframe_insertion	REV__ERICH5|p.V67_S68insTLV|1|0.12|ENSG00000177459|chr8:98089214-98089215|-/AGTTACTTT|inframe_insertion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.32952880859375	2	508.329142	1014.64373	-0.0252	-1.281E-05	0.77052	0.00039168	0.74532	0.00037887	508.329440867152	21.348	0.14485	21.348	21.247	21.392	0					8	3	3	0	0	0	0.13907	1	6781	6781		72.879	7.4139	1	411500	+		40821	20645	27307	27414	41341	41341					0.1369947940812608
SVLVGNTVLT	10	Unmodified	_SVLVGNTVLT_					0	0	0			REV__ENSG00000188089|ENST00000696112|PLA2G4E	REV__ENSG00000188089|ENST00000696112|PLA2G4E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.79473876953125	2	501.795132	1001.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.009	1	39.009	38.509	39.509	0								0	0	0	0.37293	1	15328	15328		38.754	4.832	1		+		40822	17154	27308	27415	41342	41342					0.07498609757453778
SVLVKGKDQ	9	Unmodified	_SVLVKGKDQ_					0	0	0		ENST00000609796.1_1_20:1460117-1472086:-|nuORF	ENST00000609796.1_1_20:1460117-1472086:-|nuORF	ENST00000609796.1_1_20:1460117-1472086:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.28662109375	2	487.287474	972.560395	0.43356	0.00021127	-2.545	-0.0012401	-2.1114	-0.0010289	487.2863688361734	26.616	0.10424	26.616	26.565	26.67	0					4	2	2	0	0	0	0.24334	1	8607	8607		56.434	5.2411	1	37028			40823	11102	27309	27416	41343	41343					0.07301742960282809
SVLVSAGNVK	10	Unmodified	_SVLVSAGNVK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.28729248046875	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.84	1	26.84	26.34	27.34	0								0	0	0	0.010524	1	9309	9309		101.46	27.205	1				40824	7426	27310	27417	41344	41344					0.07301742960282809
SVLVSAGNVK	10	Unmodified	_SVLVSAGNVK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.287353515625	2	487.287474	972.560395	-1.2442	-0.00060626	0.57779	0.00028155	-0.66638	-0.00032472	487.2877926684685	26.558	0.11728	26.558	26.519	26.636	0					7	4	2	0	0	0	0.44292	1	8366	8366		51.528	4.7613	1	87518			40825	7426	27310	27417	41345	41345					0.07301742960282809
SVLVSAGNVK	10	Unmodified	_SVLVSAGNVK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2873229980469	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.849	1	26.849	26.349	27.349	0								0	0	0	0.12818	1	9659	9659		74.165	9.9577	1				40826	7426	27310	27417	41346	41346					0.07301742960282809
SVLVSAGNVK	10	Unmodified	_SVLVSAGNVK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2875061035156	2	487.287474	972.560395	-0.53731	-0.00026182	0.54023	0.00026325	0.0029246	1.4251E-06	487.28786595689996	26.764	0.26364	26.764	26.705	26.968	0					10	5	3	0	0	0	0.065778	1	9507	9507		104.01	27.239	1	491110			40827	7426	27310	27417	41347	41347					0.07301742960282809
SVLVTGSRL	9	Unmodified	_SVLVTGSRL_					0	0	0			REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2816467285156	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.613	1	18.613	18.113	19.113	0								0	0	0	0.35899	1	4893	4893		23.042	0	1		+		40828	17738	27311	27418	41348	41348					0.08177760305852644
SVLVVAGSLK	10	Unmodified	_SVLVVAGSLK_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.D2341Tfs*111|1|0.32|ENSG00000187775|chr17:78486305-78486305|G/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;DNAH17|p.K2058Qfs*32|1|0.09|ENSG00000187775|chr17:78494691-78494692|-/G|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant;DNAH9|p.P2650Hfs*2|2|0.29|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9	DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.80828857421875	2	486.808042	971.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.869	1	20.869	20.369	21.369	0								0	0	0	0.074065	1	5653	5653		85.161	13.283	1				40829	814;812;997	27312	27419	41349	41349					0.11459503999753906
SVLWNAMIHPL	11	Unmodified	_SVLWNAMIHPL_					0	0	0		ENSG00000110013|ENST00000263593|SIAE;nc|ENSG00000110013|Q9HAT2-2|SIAE	ENSG00000110013|ENST00000263593|SIAE	ENSG00000110013|ENST00000263593|SIAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.5654296875	3	427.565514	1279.67471	-0.98502	-0.00042116	1.0646	0.0004552	0.079607	3.4037E-05	427.56610565526205	13.489	0.066764	13.489	13.454	13.521	0					5	3	2	0	0	0	0.72624	1	2795	2795		25.126	1.7481	1	48328			40830	2603	27313	27420	41350	41350					0.04606309450718982
SVLWVGPV	8	Unmodified	_SVLWVGPV_					0	0	0			REV__ENST00000488292.1_1_9:35738625-35739104:-|nuORF	REV__ENST00000488292.1_1_9:35738625-35739104:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.7481384277344	2	428.749996	855.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.428	1	20.428	19.928	20.928	0								0	0	0	1.7419	1	5742	5742		44.531	5.7249	1		+		40831	19689	27314	27421	41351	41351					0.051916052197157114
SVMAQVRQK	9	Unmodified	_SVMAQVRQK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7925415039062	2	523.792401	1045.57025	0.73901	0.00038709	-0.5552	-0.00029081	0.18381	9.628E-05	523.7922977009919	19.163	0.21143	19.163	19.086	19.297	0					17	6	4	0	0	0	0.0076184	1	4896	4896		157.33	69.575	1	2488000			40832	1181	27315	27422	41352	41352					0.04928607694000675
SVMAQVRQK	9	Unmodified	_SVMAQVRQK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7924194335938	2	523.792401	1045.57025	0.090604	4.7458E-05	-0.19898	-0.00010422	-0.10838	-5.6767E-05	523.7924178666844	19.516	0.45197	19.516	19.294	19.746	0					30	10	5	0	0	0	0.0047071	1	5887	5887		157.33	157.33	1	14949000			40833	1181	27315	27422	41353	41353					0.04928607694000675
SVMAQVRQK	9	Unmodified	_SVMAQVRQK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7926635742188	2	523.792401	1045.57025	0.38665	0.00020253	-0.20519	-0.00010748	0.18146	9.5047E-05	523.7924250622642	19.184	0.1379	19.184	19.105	19.243	0					14	4	4	0	0	0	0.012936	1	5140	5140		131.03	51.58	1	1935500			40834	1181	27315	27422	41354	41354					0.04928607694000675
SVMAQVRQK	9	Unmodified	_SVMAQVRQK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.79248046875	2	523.792401	1045.57025	0.040788	2.1364E-05	-0.21598	-0.00011313	-0.17519	-9.1762E-05	523.7924259234842	19.404	0.61239	19.404	19.247	19.859	0					21	12	4	0	0	0	0.0030642	1	6115	6115		166.68	65.078	1	10447000			40835	1181	27315	27422	41355	41355					0.04928607694000675
SVMAQVRQK	9	Unmodified	_SVMAQVRQK_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7926025390625	2	523.792401	1045.57025	-1.2745	-0.00066756	1.8587	0.00097359	0.58426	0.00030603	523.7935313757961	19.268	0.17509	19.268	19.181	19.356	0					12	4	4	0	0	0	0.012936	1	5187	5187		131.03	51.58	1	2271000			40836	1181	27315	27422	41356	41356					0.04928607694000675
SVMAQVRQK	9	Oxidation (M)	_SVM(Oxidation (M))AQVRQK_		SVM(1)AQVRQK		SVM(150)AQVRQK	0	0	1		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7901611328125	2	531.789858	1061.56516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.422	1	15.422	14.922	15.922	0								0	0	0	0.0015638	1	3978	3978		148.04	68.33	1				40837	1181	27315	27423	41357	41357		53			0.03684303831391844
SVMAQVRQK	9	Oxidation (M)	_SVM(Oxidation (M))AQVRQK_		SVM(1)AQVRQK		SVM(69)AQVRQK	0	0	1		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7896728515625	2	531.789858	1061.56516	0.28817	0.00015325	-0.42529	-0.00022616	-0.13712	-7.2917E-05	531.789531609366	15.408	0.16105	15.408	15.306	15.467	0					6	3	2	0	0	0	0.14603	1	4218	4218		68.787	26.391	1	612620			40838	1181	27315	27423	41358	41358		53			0.03684303831391844
SVMAQVRQK	9	Oxidation (M)	_SVM(Oxidation (M))AQVRQK_		SVM(1)AQVRQK		SVM(64)AQVRQK	0	0	1		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7901000976562	2	531.789858	1061.56516	3.4173	0.0018173	-3.1399	-0.0016698	0.27742	0.00014753	531.7883116747242	15.339	0.11682	15.339	15.28	15.397	0					4	2	2	0	0	0	0.17854	1	4034	4034		64.207	9.431	1	509820			40839	1181	27315	27423	41359	41359		53			0.03684303831391844
SVMCKITTE	9	Carbamidomethyl (C)	_SVMC(Carbamidomethyl (C))KITTE_	SVMC(1)KITTE		SVMC(46)KITTE		0	1	0			REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF	REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7584838867188	2	534.756835	1067.49912	1.1805	0.00063128	0.80123	0.00042846	1.9817	0.0010597	534.7572234381848	18.339	0.1468	18.339	18.236	18.383	0					11	6	2	0	0	0	0.35021	1	4534	4534		45.972	45.972	1	101500	+		40840	17865	27316	27424	41360	41360	625				-0.03193273125680207
SVMCKITTE	9	Carbamidomethyl (C)	_SVMC(Carbamidomethyl (C))KITTE_	SVMC(1)KITTE		SVMC(64)KITTE		0	1	0			REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF	REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7573852539062	2	534.756835	1067.49912	1.853	0.00099092	-0.793	-0.00042406	1.06	0.00056685	534.7564800531311	18.564	0.2644	18.564	18.454	18.719	0					12	5	3	0	0	0	0.18416	1	5590	5590		63.534	12.198	1	2213600	+		40841	17865	27316	27424	41361	41361	625				-0.03193273125680207
SVMELARLK	9	Unmodified	_SVMELARLK_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.53900146484375	3	349.539077	1045.5954	0.40899	0.00014296	-0.95828	-0.00033495	-0.54928	-0.000192	349.53881931074426	32.863	0.16507	32.863	32.807	32.972	0					12	6	3	0	0	0	0.56424	1	10655	10655		25.574	4.6271	1	226380			40842	2928	27317	27425	41362	41362					0.07442662496555386
SVMELARLK	9	Unmodified	_SVMELARLK_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.8057250976562	2	523.804977	1045.5954	0.73836	0.00038675	-0.12933	-6.7741E-05	0.60903	0.00031901	523.8051284177927	32.883	0.27159	32.883	32.798	33.07	0					21	11	4	0	0	0	0.13109	1	10662	10662		75.043	12.936	1	397040			40843	2928	27317	27425	41363	41363					0.07442662496555386
SVMELARLK	9	Unmodified	_SVMELARLK_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.53912353515625	3	349.539077	1045.5954	0.69726	0.00024372	-0.97182	-0.00033969	-0.27457	-9.5972E-05	349.53878839471224	33.122	0.29387	33.122	33.057	33.351	0					21	8	3	0	0	0	0.50858	1	12217	12217		31.53	4.4825	1	579820			40844	2928	27317	27425	41364	41364					0.07442662496555386
SVMELARLK	9	Unmodified	_SVMELARLK_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.8057250976562	2	523.804977	1045.5954	0.090758	4.7539E-05	0.7166	0.00037536	0.80736	0.0004229	523.8054304795626	33.116	0.29322	33.116	33.046	33.339	0					28	8	5	0	0	0	0.015992	2	12221	12221;12236		136.27	40.078	1	3161800			40845	2928	27317	27425	41365;41366	41365					0.07442662496555386
SVMELARLK	9	Unmodified	_SVMELARLK_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.8053588867188	2	523.804977	1045.5954	0.39098	0.0002048	-0.38096	-0.00019955	0.010022	5.2497E-06	523.8049895220529	32.929	0.23177	32.929	32.84	33.072	0					21	9	4	0	0	0	0.021015	1	11015	11015		104.06	43.763	1	246500			40846	2928	27317	27425	41367	41367					0.07442662496555386
SVMELARLK	9	Unmodified	_SVMELARLK_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8051147460938	2	523.804977	1045.5954	0.044018	2.3057E-05	0.043233	2.2646E-05	0.087251	4.5703E-05	523.8050743346968	33.087	0.5736	33.087	32.987	33.561	0					31	13	4	0	0	0	0.0011548	2	12642	12642;12684		153.04	92.918	1	2505400			40847	2928	27317	27425	41368;41369	41368					0.07442662496555386
SVMELARLK	9	Unmodified	_SVMELARLK_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.538818359375	3	349.539077	1045.5954	-0.043254	-1.5119E-05	-0.48988	-0.00017123	-0.53313	-0.00018635	349.53901540779685	33.068	0.34457	33.068	32.972	33.317	0					20	7	4	0	0	0	0.27249	1	12519	12519		52.937	19.015	1	1127300			40848	2928	27317	27425	41370	41370					0.07442662496555386
SVMEVNSGIYR	11	Unmodified	_SVMEVNSGIYR_					0	0	0		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	627.8112182617188	2	627.810987	1253.60742	1.2742	0.00079996	-1.4272	-0.00089601	-0.15299	-9.6046E-05	628.3114664205361	34.017	0.12791	34.017	33.909	34.037	0					5	3	2	0	0	0	0.050009	1	12634	12634		105.17	43.474	1	117180			40849	7199	27318	27426	41371	41371					-0.009237655508741227
SVMEVNSGIYR	11	Unmodified	_SVMEVNSGIYR_					0	0	0		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.810546875	2	627.810987	1253.60742	-0.052627	-3.304E-05	-0.6447	-0.00040475	-0.69733	-0.00043779	627.8107225120528	33.989	0.1091	33.989	33.935	34.044	0					6	2	3	0	0	0	0.20372	1	13068	13068		73.841	24.4	1	100250			40850	7199	27318	27426	41372	41372					-0.009237655508741227
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.25244140625	2	468.252577	934.490601	0.033118	1.5508E-05	-0.67403	-0.00031561	-0.64091	-0.00030011	468.25230336268584	28.915	0.22151	28.915	28.789	29.011	0					15	7	3	0	0	0	0.02429	1	9057	9057		114.89	2.4836	1	385590			40851	789	27319	27427	41373	41373					0.020735410200245497
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2523498535156	2	468.252577	934.490601	0.3046	0.00014263	-0.93114	-0.00043601	-0.62654	-0.00029338	468.2522251791118	29.171	0.28887	29.171	29.046	29.334	0					13	7	3	0	0	0	0.014413	1	10380	10380		131.62	19.205	1	2904600			40852	789	27319	27427	41374	41374					0.020735410200245497
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2523193359375	2	468.252577	934.490601	-1.0977	-0.000514	0.22086	0.00010342	-0.87684	-0.00041058	468.252820287473	28.913	0.2667	28.913	28.824	29.091	0					21	10	4	0	0	0	0.047855	1	9347	9347		96.034	13.283	1	759910			40853	789	27319	27427	41375	41375					0.020735410200245497
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.25213623046875	2	468.252577	934.490601	0.63749	0.00029851	-1.2293	-0.00057563	-0.59181	-0.00027712	468.25205301746337	29.154	0.28069	29.154	29.053	29.334	0					9	6	2	0	0	0	0.017421	1	10755	10755		126.24	2.1625	1	4260900			40854	789	27319	27427	41376	41376					0.020735410200245497
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.25225830078125	2	468.252577	934.490601	-0.70859	-0.0003318	-0.46969	-0.00021993	-1.1783	-0.00055173	468.25240996878875	28.959	0.18483	28.959	28.88	29.064	0					6	4	2	0	0	0	0.0067848	1	9676	9676		150.36	26.281	1	530910			40855	789	27319	27427	41377	41377					0.020735410200245497
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.25201416015625	2	468.252577	934.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.933	1	28.933	28.433	29.433	0								0	0	0	0.012693	1	9669	9669		106.68	13.54	1				40856	789	27319	27427	41378	41378					0.020735410200245497
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.252197265625	2	468.252577	934.490601	-0.51444	-0.00024089	-0.4028	-0.00018861	-0.91724	-0.0004295	468.25246450387675	29.116	0.41427	29.116	28.809	29.224	0					19	8	4	0	0	0	0.017421	1	10615	10615		126.24	2.1625	1	1747400			40857	789	27319	27427	41379	41379					0.020735410200245497
SVMGVTVSR	9	Unmodified	_SVMGVTVSR_					0	0	0		DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2522888183594	2	468.252577	934.490601	0.58483	0.00027385	-1.1771	-0.00055116	-0.59223	-0.00027731	468.25207207261434	29.101	0.26597	29.101	28.992	29.258	0					7	5	2	0	0	0	0.02429	1	10609	10609		114.89	13.642	1	4468200			40858	789	27319	27427	41380	41380					0.020735410200245497
SVMKSFIKR	9	Unmodified	_SVMKSFIKR_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;ENST00000528375.1_1_11:61905314-61909007:+|nuORF	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	365.8833312988281	3	365.882955	1094.62703	0.47205	0.00017271	0.32456	0.00011875	0.7966	0.00029146	365.8831429324314	23.316	0.27045	23.316	23.183	23.453	0					12	7	2	0	0	0	0.28897	1	6718	6718		66.962	43.439	1	89174			40859	4890	27320	27428	41381	41381					0.08350655250546879
SVMKSFIKR	9	Unmodified	_SVMKSFIKR_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;ENST00000528375.1_1_11:61905314-61909007:+|nuORF	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.3203125	2	548.320794	1094.62703	1.2427	0.00068141	-1.1587	-0.00063532	0.084065	4.6095E-05	548.3202299064915	23.307	0.12496	23.307	23.21	23.335	0					6	3	2	0	0	0	0.51991	1	6728	6728		30.318	1.1682	1	49410			40860	4890	27320	27428	41382	41382					0.08350655250546879
SVMKSFIKR	9	Unmodified	_SVMKSFIKR_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;ENST00000528375.1_1_11:61905314-61909007:+|nuORF	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.88323974609375	3	365.882955	1094.62703	0.75129	0.00027489	-0.62903	-0.00023015	0.12226	4.4734E-05	365.88288497838266	23.606	0.65657	23.606	23.444	24.101	0					34	15	5	0	0	0	0.3269	1	7832	7832		63.426	26.98	1	2843400			40861	4890	27320	27428	41383	41383					0.08350655250546879
SVMKSFIKR	9	Unmodified	_SVMKSFIKR_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;ENST00000528375.1_1_11:61905314-61909007:+|nuORF	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.3218383789062	2	548.320794	1094.62703	0.48788	0.00026752	0.82763	0.0004538	1.3155	0.00072132	548.3214466289046	23.601	0.40197	23.601	23.473	23.875	0					18	9	3	0	0	0	0.14578	1	7826	7826		68.846	38.343	1	676030			40862	4890	27320	27428	41384	41384					0.08350655250546879
SVMKSFIKR	9	Unmodified	_SVMKSFIKR_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;ENST00000528375.1_1_11:61905314-61909007:+|nuORF	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.3218994140625	2	548.320794	1094.62703	0.30155	0.00016535	1.4518	0.00079607	1.7534	0.00096142	548.3216951743381	23.537	0.21709	23.537	23.429	23.646	0					7	4	2	0	0	0	0.15558	1	8132	8132		66.962	19.305	1	371800			40863	4890	27320	27428	41385	41385					0.08350655250546879
SVMKSFIKR	9	Unmodified	_SVMKSFIKR_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;ENST00000528375.1_1_11:61905314-61909007:+|nuORF	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.88299560546875	3	365.882955	1094.62703	-0.1479	-5.4112E-05	0.23194	8.4863E-05	0.084046	3.0751E-05	365.88317789293586	23.505	0.3615	23.505	23.385	23.747	0					19	7	4	0	0	0	0.28897	1	7989	7989		66.962	42.443	1	393250			40864	4890	27320	27428	41386	41386					0.08350655250546879
SVMLGAGLLAK	11	Unmodified	_SVMLGAGLLAK_					0	0	0		ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant	ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3148803710938	2	530.315177	1058.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.104	1	43.104	42.604	43.604	0								0	0	0	0.36657	1	16291	16291		42.864	7.246	1				40865	36	27321	27429	41387	41387					0.08883833156392029
SVMLGGRNIK	10	Unmodified	_SVMLGGRNIK_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.8080444335938	2	537.808051	1073.60155	0.78479	0.00042207	-0.46799	-0.00025169	0.3168	0.00017038	537.8078771838918	23.984	0.14463	23.984	23.919	24.064	0					10	4	3	0	0	0	0.3029	1	7016	7016		54.722	0	1	285780			40866	6786	27322	27430	41388	41388					0.06769180728088031
SVMLGGRNIK	10	Unmodified	_SVMLGGRNIK_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.80859375	2	537.808051	1073.60155	0.22534	0.00012119	-0.090014	-4.841E-05	0.13533	7.278E-05	537.8083077710644	24.303	0.15175	24.303	24.204	24.356	0					10	3	4	0	0	0	0.011557	1	8149	8149		104.06	13.456	1	2245700			40867	6786	27322	27430	41389	41389					0.06769180728088031
SVMLGGRNIK	10	Unmodified	_SVMLGGRNIK_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.808349609375	2	537.808051	1073.60155	-1.4393	-0.00077405	2.2319	0.0012004	0.79267	0.0004263	537.8093716763541	24.072	0.14114	24.072	23.983	24.124	0					9	3	3	0	0	0	0.057264	1	7458	7458		85.161	31.809	1	411040			40868	6786	27322	27430	41390	41390					0.06769180728088031
SVMLGGRNIK	10	Unmodified	_SVMLGGRNIK_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.808349609375	2	537.808051	1073.60155	3.3505	0.0018019	-3.0555	-0.0016433	0.29502	0.00015867	537.8065952385386	24.204	0.16505	24.204	24.147	24.312	0					9	3	4	0	0	0	0.010919	1	8327	8327		117.81	13.065	1	3365100			40869	6786	27322	27430	41391	41391					0.06769180728088031
SVMLQVTVL	9	Unmodified	_SVMLQVTVL_					0	0	0			REV__ENSG00000160716|ENST00000368476|CHRNB2	REV__ENSG00000160716|ENST00000368476|CHRNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.287841796875	2	495.288628	988.562703	0.011076	5.4858E-06	4.2737	0.0021167	4.2848	0.0021222	495.2909854835997	18.57	0.19257	18.57	18.503	18.695	0					9	7	2	0	0	0	0.53064	1	4675	4675		15.642	0	1	480070	+		40870	15761	27323	27431	41392	41392					0.06796455373739718
SVMNTSNPK	9	Unmodified	_SVMNTSNPK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000585674.1_1_18:76966984-77037243:+|nuORF;ATP9B|p.N368Kfs*2|1|0.4|ENSG00000166377|chr18:79214028-79214029|-/A|frameshift_variant;ATP9B|p.N368Ifs*13|1|0.37|ENSG00000166377|chr18:79214029-79214029|A/-|frameshift_variant	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.2382507324219	2	489.239667	976.46478	-0.099038	-4.8454E-05	-1.0828	-0.00052974	-1.1818	-0.00057819	489.2390867446647	18.163	0.085859	18.163	18.106	18.192	0					6	3	2	0	0	0	0.085655	1	4478	4478		82.75	9.8712	1	65461			40871	5891	27324	27432	41393	41393					-0.02439353222268892
SVMNTSNPK	9	Unmodified	_SVMNTSNPK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000585674.1_1_18:76966984-77037243:+|nuORF;ATP9B|p.N368Kfs*2|1|0.4|ENSG00000166377|chr18:79214028-79214029|-/A|frameshift_variant;ATP9B|p.N368Ifs*13|1|0.37|ENSG00000166377|chr18:79214029-79214029|A/-|frameshift_variant	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2393493652344	2	489.239667	976.46478	0.77919	0.00038121	-2.2687	-0.0011099	-1.4895	-0.0007287	489.2388319215842	18.476	0.40074	18.476	18.294	18.695	0					16	9	2	0	0	0	0.021015	1	5405	5405		120.31	50.678	1	557350			40872	5891	27324	27432	41394	41394					-0.02439353222268892
SVMNTSNPK	9	Unmodified	_SVMNTSNPK_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000585674.1_1_18:76966984-77037243:+|nuORF;ATP9B|p.N368Kfs*2|1|0.4|ENSG00000166377|chr18:79214028-79214029|-/A|frameshift_variant;ATP9B|p.N368Ifs*13|1|0.37|ENSG00000166377|chr18:79214029-79214029|A/-|frameshift_variant	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.23931884765625	2	489.239667	976.46478	0.77809	0.00038067	-2.3268	-0.0011384	-1.5488	-0.00075771	489.23907022600025	18.413	0.46277	18.413	18.206	18.669	0					21	9	3	0	0	0	0.056004	1	5518	5518		93.143	2.3666	1	650500			40873	5891	27324	27432	41395	41395					-0.02439353222268892
SVMPAGVDKI	10	Unmodified	_SVMPAGVDKI_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000477620.5_1_7:135320372-135330929:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7765197753906	2	508.775885	1015.53722	-0.02134	-1.0857E-05	1.331	0.0006772	1.3097	0.00066635	508.7770227837573	35.194	0.51323	35.194	34.943	35.457	0					42	13	4	0	0	0	0.2978	1	13161	13161		67.494	2.0283	1	1565700			40874	5131	27325	27433	41396	41396					0.03006980851307617
SVMPKKSILK	10	Unmodified	_SVMPKKSILK_					0	0	0		ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ZNF318|p.S508Pfs*4|1|0.19|ENSG00000171467|chr6:43355812-43355812|A/-|frameshift_variant;ZNF318|p.N708Tfs*6|1|0.34|ENSG00000171467|chr6:43355211-43355211|T/-|frameshift_variant;ZNF318|p.P785Lfs*37|1|0.23|ENSG00000171467|chr6:43354980-43354980|G/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.A1247Lfs*13|1|0.36|ENSG00000171467|chr6:43340260-43340260|T/-|frameshift_variant;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.5703430175781	3	377.570377	1129.6893	0.23519	8.8802E-05	-0.50142	-0.00018932	-0.26623	-0.00010052	377.5701639080196	21.634	0.36898	21.634	21.424	21.793	0					11	7	2	0	0	0	0.55031	1	7191	7191		39.873	18.187	1	544810			40875	23150	27326	27434	41397	41397					0.12964381598862929
SVMPKKSILKK	11	Unmodified	_SVMPKKSILKK_					0	0	0		ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ZNF318|p.S508Pfs*4|1|0.19|ENSG00000171467|chr6:43355812-43355812|A/-|frameshift_variant;ZNF318|p.N708Tfs*6|1|0.34|ENSG00000171467|chr6:43355211-43355211|T/-|frameshift_variant;ZNF318|p.P785Lfs*37|1|0.23|ENSG00000171467|chr6:43354980-43354980|G/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.A1247Lfs*13|1|0.36|ENSG00000171467|chr6:43340260-43340260|T/-|frameshift_variant;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.2685241699219	3	420.268698	1257.78426	-0.067419	-2.8334E-05	-0.49535	-0.00020818	-0.56277	-0.00023652	420.26854223176434	19.281	0.41257	19.281	19.034	19.447	0					18	8	4	0	0	0	0.33569	1	6058	6058		58.63	19.876	1	454680			40876	23150	27327	27435	41398	41398					0.1656831507004881
SVMPKKSILKK	11	Unmodified	_SVMPKKSILKK_					0	0	0		ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ZNF318|p.S508Pfs*4|1|0.19|ENSG00000171467|chr6:43355812-43355812|A/-|frameshift_variant;ZNF318|p.N708Tfs*6|1|0.34|ENSG00000171467|chr6:43355211-43355211|T/-|frameshift_variant;ZNF318|p.P785Lfs*37|1|0.23|ENSG00000171467|chr6:43354980-43354980|G/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.A1247Lfs*13|1|0.36|ENSG00000171467|chr6:43340260-43340260|T/-|frameshift_variant;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.2685241699219	3	420.268698	1257.78426	-0.31194	-0.0001311	-0.27923	-0.00011735	-0.59117	-0.00024845	420.26867109167983	19.253	0.46048	19.253	19.047	19.508	0					25	9	4	0	0	0	0.071119	1	5907	5907		96.756	50.847	1	1061400			40877	23150	27327	27435	41399	41399					0.1656831507004881
SVMREGRQK	9	Unmodified	_SVMREGRQK_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.1976013183594	3	364.197713	1089.57131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.652	1	13.652	13.152	14.152	0								0	0	0	0.33579	1	3219	3219		28.081	1.3886	1				40878	4019	27328	27436	41400	41400					0.030108220629017524
SVMREGRQK	9	Unmodified	_SVMREGRQK_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.79345703125	2	545.792932	1089.57131	1.9424	0.0010602	-2.5812	-0.0014088	-0.63877	-0.00034864	545.791585091301	13.653	0.20969	13.653	13.557	13.766	0					6	4	2	0	0	0	0.3269	1	3212	3212		40.778	0	1	319800			40879	4019	27328	27436	41401	41401					0.030108220629017524
SVMRLTISY	9	Unmodified	_SVMRLTISY_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2887573242188	2	535.289159	1068.56377	1.8079	0.00096775	-1.2856	-0.00068817	0.52231	0.00027959	535.2883523495282	42.578	0.20449	42.578	42.481	42.685	0					23	10	3	0	0	0	0.095583	1	16693	16693		80.455	14.557	1	178790			40880	2053	27329	27437	41402	41402					0.03222669742626749
SVMRLTISY	9	Oxidation (M)	_SVM(Oxidation (M))RLTISY_		SVM(1)RLTISY		SVM(83)RLTISY	0	0	1		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.287109375	2	543.286617	1084.55868	2.008	0.0010909	1.1092	0.0006026	3.1172	0.0016935	543.2858671714176	36.273	0.71373	36.273	36.115	36.829	0					30	14	3	0	0	0	0.085655	1	14046	14046		82.75	27.246	1	480800			40881	2053	27329	27438	41403	41403		96			0.019783658800179182
SVMRPEQIMK	10	Unmodified	_SVMRPEQIMK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.8204345703125	2	609.820301	1217.62605	0.15812	9.6426E-05	-0.43276	-0.00026391	-0.27464	-0.00016748	609.8204638497151	27.375	0.35048	27.375	27.118	27.468	0					30	13	3	0	0	0	0.56813	1	8380	8380		26.75	8.4253	1	169350			40882	7110	27330	27439	41404	41404					0.025940728193063478
SVMRPEQIMK	10	Unmodified	_SVMRPEQIMK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.88232421875	3	406.882626	1217.62605	1.1542	0.00046964	-1.9898	-0.0008096	-0.83552	-0.00033996	406.88211306560714	27.609	0.86012	27.609	27.152	28.012	0					54	17	5	0	0	0	0.53919	1	9966	9966		41.08	4.7624	1	3248200			40883	7110	27330	27439	41405	41405					0.025940728193063478
SVMRPEQIMK	10	Unmodified	_SVMRPEQIMK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.8202514648438	2	609.820301	1217.62605	0.86168	0.00052547	-2.2467	-0.0013701	-1.385	-0.0008446	609.819449069194	27.616	0.75953	27.616	27.055	27.815	0					34	15	4	0	0	0	0.0331	1	10035	10035		104.42	47.99	1	616500			40884	7110	27330	27439	41406	41406					0.025940728193063478
SVMRPEQIMK	10	Unmodified	_SVMRPEQIMK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.2172546386719	3	406.882626	1217.62605	-0.10212	-4.155E-05	-0.22434	-9.1278E-05	-0.32645	-0.00013283	406.88270030591843	27.458	0.34133	27.458	27.208	27.549	0					15	8	3	0	0	0	0.61238	1	8981	8981		32.751	3.1998	1	115370			40885	7110	27330	27439	41407	41407					0.025940728193063478
SVMRPEQIMK	10	Unmodified	_SVMRPEQIMK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	609.8209838867188	2	609.820301	1217.62605	-1.9669	-0.0011994	1.2916	0.00078762	-0.67532	-0.00041182	609.821623393749	27.429	0.38061	27.429	27.195	27.576	0					23	9	4	0	0	0	0.549	1	8916	8916		42.338	8.1655	1	219680			40886	7110	27330	27439	41408	41408					0.025940728193063478
SVMSTVEWNK	10	Unmodified	_SVMSTVEWNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.7869262695312	2	590.786981	1179.55941	0.12421	7.338E-05	0.041459	2.4494E-05	0.16567	9.7874E-05	590.7870743925628	35.844	0.20082	35.844	35.755	35.956	0					28	10	3	0	0	0	0.35046	1	11734	11734		61.691	22.438	1	285580			40887	331	27331	27440	41409	41409					-0.023188394709450222
SVMSTVEWNK	10	Unmodified	_SVMSTVEWNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.786865234375	2	590.786981	1179.55941	0.2263	0.0001337	-0.3695	-0.00021829	-0.1432	-8.4598E-05	590.7868057561651	36.131	0.39277	36.131	35.892	36.285	0					25	10	4	0	0	0	0.0010959	1	13574	13574		181.41	101.69	1	1798200			40888	331	27331	27440	41410	41410					-0.023188394709450222
SVMSTVEWNK	10	Unmodified	_SVMSTVEWNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.7862548828125	2	590.786981	1179.55941	-0.49495	-0.00029241	0.921	0.00054411	0.42605	0.00025171	590.7875246355422	35.889	0.2387	35.889	35.814	36.053	0					27	11	4	0	0	0	0.30252	1	12139	12139		66.962	29.15	1	556920			40889	331	27331	27440	41411	41411					-0.023188394709450222
SVMSTVEWNK	10	Unmodified	_SVMSTVEWNK_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.7877197265625	2	590.786981	1179.55941	-0.09857	-5.8234E-05	1.007	0.0005949	0.90839	0.00053667	590.787886967975	36.097	0.099659	36.097	36.041	36.141	0					8	3	3	0	0	0	0.22691	1	14030	14030		76.17	32.053	1	99206			40890	331	27331	27440	41412	41412					-0.023188394709450222
SVMSTVEWNK	10	Oxidation (M)	_SVM(Oxidation (M))STVEWNK_		SVM(1)STVEWNK		SVM(72)STVEWNK	0	0	1		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	598.78466796875	2	598.784438	1195.55432	-0.048826	-2.9236E-05	0.076064	4.5546E-05	0.027238	1.631E-05	598.7844549744575	28.926	0.21092	28.926	28.835	29.046	0					13	5	3	0	0	0	0.25899	1	10286	10286		72.243	12.312	1	321410			40891	331	27331	27441	41413	41413		16			-0.03563143333553853
SVNALFSL	8	Unmodified	_SVNALFSL_					0	0	0			REV__SLC36A4|p.N453Ifs*4|1|0.19|ENSG00000180773|chr11:93148694-93148694|T/-|frameshift_variant	REV__SLC36A4|p.N453Ifs*4|1|0.19|ENSG00000180773|chr11:93148694-93148694|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.7370910644531	2	425.737086	849.459619	-0.73297	-0.00031205	0.46056	0.00019608	-0.27241	-0.00011598	425.73719602496743	41.618	0.2047	41.618	41.531	41.736	0					21	10	3	0	0	0	0.6088	1	15808	15808		47.657	0	1	163790	+		40892	16819	27332	27442	41414	41414					0.028867109774296296
SVNALFSL	8	Unmodified	_SVNALFSL_					0	0	0			REV__SLC36A4|p.N453Ifs*4|1|0.19|ENSG00000180773|chr11:93148694-93148694|T/-|frameshift_variant	REV__SLC36A4|p.N453Ifs*4|1|0.19|ENSG00000180773|chr11:93148694-93148694|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.7371826171875	2	425.737086	849.459619	-0.06142	-2.6149E-05	-0.25269	-0.00010758	-0.31411	-0.00013373	425.7368755472181	41.329	0.28537	41.329	41.249	41.534	0					36	16	3	0	0	0	0.2678	1	14568	14568		93.195	0	1	251060	+		40893	16819	27332	27442	41415	41415					0.028867109774296296
SVNDLTLLK	9	Unmodified	_SVNDLTLLK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.79510498046875	2	501.795132	1001.57571	-0.56243	-0.00028223	0.40009	0.00020076	-0.16235	-8.1464E-05	501.7954763261202	38.945	0.15903	38.945	38.839	38.998	0					5	3	2	0	0	0	0.36135	1	15342	15342		45.022	6.2161	1	172270			40894	2470	27333	27443	41416	41416					0.07498609757465147
SVNDLTLLK	9	Unmodified	_SVNDLTLLK_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7945251464844	2	501.795132	1001.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.956	1	38.956	38.456	39.456	0								0	0	0	0.051298	1	15358	15358		85.862	23.754	1				40895	2470	27333	27443	41417	41417					0.07498609757465147
SVNENVKGNK	10	Unmodified	_SVNENVKGNK_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.7901611328125	2	544.78837	1087.56219	1.1007	0.00059964	0.17862	9.7309E-05	1.2793	0.00069695	544.7890087584849	16.745	0.068626	16.745	16.711	16.779	0					4	2	2	0	0	0	0.21754	1	4041	4041		77.318	4.4383	1	43877	+		40896	22138	27334	27444	41418	41418					0.021907519782416784
SVNERIENK	9	Unmodified	_SVNERIENK_					0	0	0		PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant	PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.7887573242188	2	544.78837	1087.56219	0.49079	0.00026738	-0.65363	-0.00035609	-0.16284	-8.8714E-05	544.7879139608632	16.722	0.10409	16.722	16.673	16.777	0					8	4	2	0	0	0	0.18416	1	4063	4063		63.534	1.4264	1	140350			40897	2832	27335	27445	41419	41419					0.02190751978218941
SVNERIENK	9	Unmodified	_SVNERIENK_					0	0	0		PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant	PCCB|p.A153Lfs*3|1|0.38|ENSG00000114054|chr3:136261975-136261975|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7884521484375	2	544.78837	1087.56219	1.9485	0.0010615	-1.3763	-0.00074978	0.57227	0.00031177	544.7873549859314	16.904	0.30695	16.904	16.757	17.064	0					8	6	3	0	0	0	0.10506	1	4937	4937		78.264	9.477	1	998440			40898	2832	27335	27445	41420	41420					0.02190751978218941
SVNFDMTSK	9	Unmodified	_SVNFDMTSK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7394409179688	2	514.739499	1027.46445	0.73012	0.00037582	-0.34391	-0.00017702	0.38621	0.0001988	514.7393163938617	30.957	0.18422	30.957	30.827	31.012	0					7	4	2	0	0	0	0.19952	1	11613	11613		61.691	15.719	1	115410			40899	6220	27336	27446	41421	41421					-0.04818772942121541
SVNFDMTSK	9	Unmodified	_SVNFDMTSK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7383422851562	2	514.739499	1027.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.726	1	30.726	30.226	31.226	0								0	0	0	0.241	1	10498	10498		45.022	16.941	1				40900	6220	27336	27446	41422	41422					-0.04818772942121541
SVNFLISET	9	Unmodified	_SVNFLISET_					0	0	0		ENST00000322313.8_1_2:128482679-128482718:-|nuORF	ENST00000322313.8_1_2:128482679-128482718:-|nuORF	ENST00000322313.8_1_2:128482679-128482718:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.263671875	2	505.263665	1008.51278	-0.30791	-0.00015558	1.141	0.0005765	0.83307	0.00042092	505.26370600497916	24.692	0.49899	24.692	24.43	24.929	0					28	10	4	0	0	0	0.37197	1	8537	8537		44.117	3.3386	1	772550			40901	8625	27337	27447	41423	41423					0.008860439694558409
SVNGHQKAL	9	Unmodified	_SVNGHQKAL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1;nc|ENSG00000105983|Q8WVP7-2|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2616882324219	2	477.261791	952.509028	0.39199	0.00018708	0.48999	0.00023385	0.88198	0.00042093	477.2616101847319	16.01	0.18094	16.01	15.937	16.118	0					10	4	3	0	0	0	0.1424	1	4271	4271		69.628	25.511	1	149690			40902	2412	27338	27448	41424	41424					0.03087418986240209
SVNGKTVTL	9	Unmodified	_SVNGKTVTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7662658691406	2	459.766374	917.518196	-0.0047367	-2.1778E-06	-0.14923	-6.8613E-05	-0.15397	-7.0791E-05	459.7663785606969	26.294	0.1509	26.294	26.202	26.353	0					5	3	2	0	0	0	0.36135	1	8454	8454		45.022	9.8702	1	235460			40903	1085	27339	27449	41425	41425					0.056137675519039476
SVNGKTVTL	9	Unmodified	_SVNGKTVTL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.76593017578125	2	459.766374	917.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.354	1	26.354	25.854	26.854	0								0	0	0	0.3245	1	8473	8473		30.318	1.1682	1				40904	1085	27339	27449	41426	41426					0.056137675519039476
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2821044921875	2	466.282192	930.549831	-0.66846	-0.00031169	-0.17324	-8.078E-05	-0.8417	-0.00039247	466.28233300202703	17.419	1.4716	17.419	17.29	18.762	0					70	35	6	0	0	0	0.012115	1	4885	4885		136.52	45.914	1	53847000			40905	2223	27340	27450	41427	41427					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2819519042969	2	466.282192	930.549831	-0.92083	-0.00042937	-0.078717	-3.6704E-05	-0.99955	-0.00046607	466.28219133322824	17.142	1.4496	17.142	17.053	18.503	0					81	47	5	0	0	0	0.029172	2	4229	4229;4388		109.83	33.66	1	57243000			40906	2223	27340	27450	41428;41429	41428					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2825012207031	2	466.282192	930.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.152	1	17.152	16.652	17.652	0								0	0	0	0.19847	1	4244	4244		51.193	5.2407	1				40907	2223	27340	27450	41430	41430					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2819519042969	2	466.282192	930.549831	0.66347	0.00030936	-1.3428	-0.00062614	-0.67938	-0.00031678	466.28175650246845	17.359	1.5107	17.359	17.251	18.761	0					82	30	4	0	0	0	0.012115	2	5127	5127;5313		136.52	56.06	1	172920000			40908	2223	27340	27450	41431;41432	41431					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.2818908691406	2	466.282192	930.549831	-0.6243	-0.0002911	-0.3716	-0.00017327	-0.9959	-0.00046437	466.28200968731755	17.169	1.1387	17.169	17.071	18.209	0					76	29	5	0	0	0	0.012115	1	4202	4202		136.52	35.262	1	46212000			40909	2223	27340	27450	41433	41433					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2820129394531	2	466.282192	930.549831	0.6531	0.00030453	-1.5623	-0.00072847	-0.9092	-0.00042395	466.2815781526181	17.36	1.5415	17.36	17.226	18.768	0					86	31	5	0	0	0	0.012115	3	4967	4967;5083;5155		136.52	45.914	1	133880000			40910	2223	27340	27450	41434;41435;41436	41434					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2821960449219	2	466.282192	930.549831	2.6323	0.0012274	-3.6522	-0.001703	-1.0199	-0.00047554	466.2811984739526	17.355	1.4927	17.355	17.209	18.702	0					71	30	6	0	0	0	0.01776	2	4962	4962;5173		125.68	42.932	1	240310000			40911	2223	27340	27450	41437;41438	41437					0.08177760305841275
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7965087890625	2	517.795663	1033.57677	1.379	0.00071403	0.34044	0.00017628	1.7194	0.00089031	517.7958299206499	13.806	0.08465	13.806	13.772	13.857	0					5	3	2	0	0	0	0.01554	1	2760	2760		128.35	56.47	1	241320			40912	1188	27341	27451	41439	41439					0.06132824126370906
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7957763671875	2	517.795663	1033.57677	0.41419	0.00021446	0.10146	5.2536E-05	0.51565	0.000267	517.7954215890543	13.818	0.083661	13.818	13.766	13.85	0					5	3	2	0	0	0	0.12383	1	2755	2755		91.265	34.831	1	107140			40913	1188	27341	27451	41440	41440					0.06132824126370906
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7960205078125	2	517.795663	1033.57677	1.3152	0.00068099	-0.61405	-0.00031795	0.70111	0.00036303	517.7952803678439	14.107	0.25636	14.107	14.016	14.273	0					15	6	4	0	0	0	0.010251	1	3374	3374		141.89	70.009	1	2044700			40914	1188	27341	27451	41441	41441					0.06132824126370906
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.53289794921875	3	345.532868	1033.57677	0.68551	0.00023687	-0.55233	-0.00019085	0.13318	4.6016E-05	345.5326590748616	14.107	0.094261	14.107	14.061	14.156	0					6	2	3	0	0	0	0.39827	1	3376	3376		68.626	43.5	1	242580			40915	1188	27341	27451	41442	41442					0.06132824126370906
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7958374023438	2	517.795663	1033.57677	0.048681	2.5207E-05	0.38871	0.00020127	0.43739	0.00022648	517.795914594758	14.102	0.17647	14.102	14.046	14.223	0					10	4	3	0	0	0	0.015306	1	3367	3367		128.51	128.51	1	778430			40916	1188	27341	27451	41443	41443					0.06132824126370906
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7960815429688	2	517.795663	1033.57677	0.07202	3.7292E-05	0.79116	0.00040966	0.86318	0.00044695	517.7959701161765	13.832	0.12164	13.832	13.784	13.906	0					11	5	3	0	0	0	0.0036876	1	2903	2903		169.99	87.753	1	546930			40917	1188	27341	27451	41444	41444					0.06132824126370906
SVNKKTIPS	9	Unmodified	_SVNKKTIPS_					0	0	0		SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant;ENSG00000144671|ENST00000448498|SLC22A14	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.28729248046875	2	487.287474	972.560395	-0.23007	-0.00011211	0.20543	0.00010011	-0.024638	-1.2006E-05	487.28745202458407	26.599	0.15132	26.599	26.552	26.704	0					6	3	2	0	0	0	0.28897	1	8602	8602		51.193	8.3284	1	83238			40918	4630	27342	27452	41445	41445					0.07301742960294177
SVNLKVSPK	9	Unmodified	_SVNLKVSPK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;PSIP1|p.K229Sfs*36|1|0.45|ENSG00000164985|chr9:15474181-15474181|T/-|frameshift_variant	ENSG00000164985|ENST00000380733|PSIP1;PSIP1|p.K229Sfs*36|1|0.45|ENSG00000164985|chr9:15474181-15474181|T/-|frameshift_variant	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.5342712402344	3	324.53432	970.581131	0.55806	0.00018111	-0.96969	-0.0003147	-0.41162	-0.00013359	324.53407985728256	21.7	0.21719	21.7	21.592	21.809	0					10	4	3	0	0	0	0.47473	1	7244	7244		42.338	17.212	1	625800			40919	5750;11982	27343	27453	41446	41446					0.09466333339946686
SVNLKVSPK	9	Unmodified	_SVNLKVSPK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;PSIP1|p.K229Sfs*36|1|0.45|ENSG00000164985|chr9:15474181-15474181|T/-|frameshift_variant	ENSG00000164985|ENST00000380733|PSIP1;PSIP1|p.K229Sfs*36|1|0.45|ENSG00000164985|chr9:15474181-15474181|T/-|frameshift_variant	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2978210449219	2	486.297842	970.581131	0.82815	0.00040273	-0.81083	-0.00039431	0.017313	8.4191E-06	486.2974995117891	21.679	0.21848	21.679	21.571	21.789	0					11	4	3	0	0	0	0.058553	1	7108	7108		92.239	12.526	1	694580			40920	5750;11982	27343	27453	41447	41447					0.09466333339946686
SVNLSNVLK	9	Unmodified	_SVNLSNVLK_					0	0	0		WWP2|p.N150Mfs*7|1|0.06|ENSG00000198373|chr16:69840233-69840234|-/TGCTTTCTCC|frameshift_variant;nc|ENSG00000198373|O00308-4|WWP2;ENSG00000198373|ENST00000359154|WWP2	WWP2|p.N150Mfs*7|1|0.06|ENSG00000198373|chr16:69840233-69840234|-/TGCTTTCTCC|frameshift_variant	WWP2|p.N150Mfs*7|1|0.06|ENSG00000198373|chr16:69840233-69840234|-/TGCTTTCTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2875671386719	2	487.287474	972.560395	0.72081	0.00035124	-0.32718	-0.00015943	0.39363	0.00019181	487.28732248900707	37.528	0.28895	37.528	37.391	37.68	0					16	8	3	0	0	0	0.24334	1	14228	14228		56.434	3.3448	1	215890			40921	7553	27344	27454	41448	41448					0.07301742960282809
SVNLTAPQGA	10	Unmodified	_SVNLTAPQGA_					0	0	0		ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2533264160156	2	479.253631	956.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.491	1	26.491	25.991	26.991	0								0	0	0	0.37293	1	9145	9145		38.754	2.3069	1				40922	9004	27345	27455	41449	41449					0.012722930294785328
SVNLTAPQGA	10	Unmodified	_SVNLTAPQGA_					0	0	0		ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2538757324219	2	479.253631	956.49271	0.022292	1.0683E-05	-0.45795	-0.00021948	-0.43566	-0.00020879	479.2535608773792	26.272	0.27691	26.272	26.093	26.37	0					13	6	3	0	0	0	0.3337	1	8404	8404		63.534	3.4156	1	117180			40923	9004	27345	27455	41450	41450					0.012722930294785328
SVNLTAPQGA	10	Unmodified	_SVNLTAPQGA_					0	0	0		ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.253173828125	2	479.253631	956.49271	-0.31409	-0.00015053	-0.061948	-2.9689E-05	-0.37604	-0.00018022	479.253650519958	26.251	0.27475	26.251	26.121	26.396	0					12	6	3	0	0	0	0.50287	1	8419	8419		45.022	2.1579	1	179330			40924	9004	27345	27455	41451	41451					0.012722930294785328
SVNLTAPQGA	10	Unmodified	_SVNLTAPQGA_					0	0	0		ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	ENST00000374165.5_1_9:116172982-116173105:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2532958984375	2	479.253631	956.49271	-0.66054	-0.00031656	-0.14995	-7.1864E-05	-0.81049	-0.00038843	479.25355679984864	26.41	0.41792	26.41	26.202	26.62	0					23	8	4	0	0	0	0.15477	1	9294	9294		85.862	20.396	1	1738700			40925	9004	27345	27455	41452	41452					0.012722930294785328
SVNNKVSKK	9	Unmodified	_SVNNKVSKK_					0	0	0		ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2980041503906	2	502.298373	1002.58219	-0.071902	-3.6116E-05	-0.49648	-0.00024938	-0.56839	-0.0002855	502.29808572073824	11.345	0.080667	11.345	11.286	11.367	0					9	4	3	0	0	0	0.01942	1	2175	2175		122.94	47.896	1	247460			40926	7286	27346	27456	41453	41453					0.08100547708852446
SVNNKVSKK	9	Unmodified	_SVNNKVSKK_					0	0	0		ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.2013854980469	3	335.201341	1002.58219	0.38208	0.00012807	-1.0805	-0.00036217	-0.69838	-0.0002341	335.201163447778	11.411	0.10735	11.411	11.346	11.453	0					5	3	2	0	0	0	0.36892	1	2335	2335		51.528	20.959	1	70139			40927	7286	27346	27456	41454	41454					0.08100547708852446
SVNNKVSKK	9	Unmodified	_SVNNKVSKK_					0	0	0		ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.299072265625	2	502.298373	1002.58219	0.97448	0.00048948	-0.65659	-0.0003298	0.31789	0.00015967	502.2981348148279	11.429	0.067552	11.429	11.37	11.438	0					4	2	2	0	0	0	0.015992	1	2330	2330		128.6	16.191	1	203590			40928	7286	27346	27456	41455	41455					0.08100547708852446
SVNNKVSKK	9	Unmodified	_SVNNKVSKK_					0	0	0		ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	ENSG00000188938|ENST00000375412|FAM120AOS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2994384765625	2	502.298373	1002.58219	2.9256	0.0014695	-1.6591	-0.00083337	1.2665	0.00063614	502.29750390302513	11.354	0.058516	11.354	11.316	11.374	0					8	3	3	0	0	0	0.082776	1	2190	2190		83.647	20.113	1	248310			40929	7286	27346	27456	41456	41456					0.08100547708852446
SVNNPILRK	9	Unmodified	_SVNNPILRK_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.8148193359375	2	520.81419	1039.61383	0.072426	3.7721E-05	0.57195	0.00029788	0.64437	0.0003356	520.8144961423545	22.679	0.51663	22.679	22.371	22.887	0					30	12	4	0	0	0	0.026656	1	7374	7374		106.68	39.189	1	985520			40930	1794	27347	27457	41457	41457					0.09560540462803147
SVNNPILRK	9	Unmodified	_SVNNPILRK_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.8146362304688	2	520.81419	1039.61383	-0.20286	-0.00010565	0.89766	0.00046752	0.6948	0.00036186	520.8145877527069	22.568	0.45829	22.568	22.285	22.744	0					13	9	2	0	0	0	0.054723	1	7611	7611		98.629	47.437	1	842500			40931	1794	27347	27457	41458	41458					0.09560540462803147
SVNNPILRK	9	Unmodified	_SVNNPILRK_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	347.5451354980469	3	347.545219	1039.61383	-0.069626	-2.4198E-05	-0.16436	-5.7123E-05	-0.23399	-8.1321E-05	347.54521326459496	22.387	0.32702	22.387	22.202	22.529	0					15	7	3	0	0	0	0.42902	1	6670	6670		39.253	8.9351	1	150540			40932	1794	27347	27457	41459	41459					0.09560540462803147
SVNNSIFYR	9	Unmodified	_SVNNSIFYR_					0	0	0		ENSG00000204560|ENST00000376442|DHX16;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2806396484375	2	550.28018	1098.54581	1.8345	0.0010095	-1.3603	-0.00074853	0.47421	0.00026095	550.2791459908058	33.332	0.28847	33.332	33.22	33.508	0					16	7	3	0	0	0	0.032383	1	12312	12312		106.68	37.055	1	284710			40933	782	27348	27458	41460	41460					0.0004767081213685742
SVNNSIFYR	9	Unmodified	_SVNNSIFYR_					0	0	0		ENSG00000204560|ENST00000376442|DHX16;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2805786132812	2	550.28018	1098.54581	1.6823	0.00092574	1.5964	0.00087848	3.2787	0.0018042	550.2797369052189	33.356	0.43388	33.356	33.22	33.654	0					27	10	5	0	0	0	0.047855	1	12746	12746		96.034	26.406	1	658880			40934	782	27348	27458	41461	41461					0.0004767081213685742
SVNNSIFYR	9	Unmodified	_SVNNSIFYR_					0	0	0		ENSG00000204560|ENST00000376442|DHX16;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2801513671875	2	550.28018	1098.54581	1.154	0.00063502	-0.25125	-0.00013826	0.90274	0.00049676	550.2794422520599	33.104	0.16026	33.104	33.032	33.192	0					10	5	2	0	0	0	0.13726	1	11574	11574		70.816	19.624	1	91449			40935	782	27348	27458	41462	41462					0.0004767081213685742
SVNNSIFYR	9	Unmodified	_SVNNSIFYR_					0	0	0		ENSG00000204560|ENST00000376442|DHX16;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2796630859375	2	550.28018	1098.54581	1.8164	0.00099951	-0.36688	-0.00020189	1.4495	0.00079762	550.2787128126695	33.318	0.51516	33.318	33.135	33.65	0					34	10	5	0	0	0	0.047855	1	12630	12630		96.034	8.3372	1	695800			40936	782	27348	27458	41463	41463					0.0004767081213685742
SVNNSIFYR	9	Unmodified	_SVNNSIFYR_					0	0	0		ENSG00000204560|ENST00000376442|DHX16;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.280517578125	2	550.28018	1098.54581	3.7416	0.002059	0.46245	0.00025448	4.2041	0.0023134	550.2790834720739	33.329	0.3657	33.329	33.167	33.533	0					22	7	4	0	0	0	0.11898	1	12648	12648		75.043	10.836	1	533410			40937	782	27348	27458	41464	41464					0.0004767081213685742
SVNPNKPATK	10	Unmodified	_SVNPNKPATK_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2957153320312	2	528.29583	1054.57711	0.69639	0.0003679	-0.10118	-5.3454E-05	0.59521	0.00031444	528.2958444564448	13.969	0.16352	13.969	13.863	14.027	0					5	3	2	0	0	0	0.21577	1	3359	3359		77.533	26.341	1	167600			40938	2153	27349	27459	41465	41465					0.05200243846206831
SVNQGQNIHRK	11	Unmodified	_SVNQGQNIHRK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.56549072265625	3	427.565453	1279.67453	3.3134	0.0014167	-2.8074	-0.0012003	0.50607	0.00021638	427.56418466831934	13.486	0.084482	13.486	13.443	13.528	0					6	4	2	0	0	0	0.75314	1	2788	2788		22.562	0.87584	1	68490			40939	500	27350	27460	41466	41466					0.04588025775069582
SVNQGQNIHRK	11	Unmodified	_SVNQGQNIHRK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.5653076171875	3	427.565453	1279.67453	-0.49978	-0.00021369	0.023332	9.9759E-06	-0.47645	-0.00020371	427.565503516802	13.713	0.11146	13.713	13.653	13.765	0					4	2	2	0	0	0	0.52595	1	3409	3409		42.338	14.694	1	540930			40940	500	27350	27460	41467	41467					0.04588025775069582
SVNQGQNIHRK	11	Unmodified	_SVNQGQNIHRK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	640.8444213867188	2	640.844542	1279.67453	-0.44785	-0.000287	0.23705	0.00015191	-0.2108	-0.00013509	640.844786961317	13.728	0.24789	13.728	13.625	13.873	0					13	5	4	0	0	0	0.011751	1	3397	3397		117.71	38.217	1	1068500			40941	500	27350	27460	41468	41468					0.04588025775069582
SVNQGQNIHRK	11	Unmodified	_SVNQGQNIHRK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.89996337890625	3	427.565453	1279.67453	0.16939	7.2427E-05	-0.11534	-4.9315E-05	0.054055	2.3112E-05	427.5655211262336	13.49	0.10781	13.49	13.424	13.532	0					9	5	2	0	0	0	0.63225	1	2712	2712		34.087	5.5098	1	121660			40942	500	27350	27460	41469	41469					0.04588025775069582
SVNQGQNIHRK	11	Unmodified	_SVNQGQNIHRK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.5653381347656	3	427.565453	1279.67453	-0.40951	-0.00017509	-0.29056	-0.00012424	-0.70007	-0.00029933	427.5654194747692	13.679	0.26149	13.679	13.572	13.834	0					12	5	4	0	0	0	0.34891	1	3221	3221		57.149	17.133	1	672430			40943	500	27350	27460	41470	41470					0.04588025775069582
SVNQGQNIHRK	11	Unmodified	_SVNQGQNIHRK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.5653991699219	3	427.565453	1279.67453	1.053	0.00045023	-1.3537	-0.00057879	-0.30069	-0.00012856	427.56491278316804	13.663	0.30928	13.663	13.605	13.914	0					13	6	3	0	0	0	0.4771	1	3234	3234		45.908	8.3999	1	1802300			40944	500	27350	27460	41471	41471					0.04588025775069582
SVNQKPHAG	9	Unmodified	_SVNQKPHAG_					0	0	0			REV__ENSG00000131849|ENST00000254166|ZNF132	REV__ENSG00000131849|ENST00000254166|ZNF132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2431640625	2	469.246141	936.477728	-0.63097	-0.00029608	-3.7139	-0.0017427	-4.3449	-0.0020388	469.2445491371623	30.605	0.26679	30.605	30.475	30.742	0					15	6	3	0	0	0	0.32741	1	11040	11040		47.916	1.9636	1	530970	+		40945	14636	27351	27461	41472	41472					0.006948459521481709
SVNSAAVLR	9	Unmodified	_SVNSAAVLR_					0	0	0		GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant;GIGYF2|p.L631*|1|0.4|ENSG00000204120|chr2:232809801-232809801|T/-|frameshift_variant;GIGYF2|p.L640Wfs*27|1|0.5|ENSG00000204120|chr2:232811261-232811261|T/-|frameshift_variant;GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENST00000463554.5_1_2:233599907-233635753:+|nuORF	GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant	GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7640380859375	2	458.764166	915.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.789	1	24.789	24.289	25.289	0								0	0	0	0.069826	1	8389	8389		80.455	8.5771	1				40946	7673	27352	27462	41473	41473					0.05264303129001746
SVNSHIYQR	9	Unmodified	_SVNSHIYQR_					0	0	0		SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.2825317382812	2	552.283254	1102.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.532	1	19.532	19.032	20.032	0								0	0	0	0.15687	1	5307	5307		58.23	23.029	1				40947	6664	27353	27463	41474	41474					0.004781890436561298
SVNSHIYQR	9	Unmodified	_SVNSHIYQR_					0	0	0		SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.52459716796875	3	368.524595	1102.55196	0.26593	9.8E-05	-0.6189	-0.00022808	-0.35297	-0.00013008	368.5244607370022	19.684	0.2682	19.684	19.625	19.894	0					9	5	3	0	0	0	0.46194	1	6275	6275		59.931	15.291	1	378050			40948	6664	27353	27463	41475	41475					0.004781890436561298
SVNSHIYQR	9	Unmodified	_SVNSHIYQR_					0	0	0		SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.795654296875	2	552.283254	1102.55196	0.091686	5.0636E-05	0.577	0.00031867	0.66869	0.00036931	552.2835284555644	19.701	0.1648	19.701	19.593	19.758	0					5	3	2	0	0	0	0.14578	1	6262	6262		68.846	15.757	1	515660			40949	6664	27353	27463	41476	41476					0.004781890436561298
SVNSTVLVK	9	Unmodified	_SVNSTVLVK_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7822570800781	2	473.782025	945.549496	0.93696	0.00044392	-0.93027	-0.00044075	0.006688	3.1687E-06	473.78152110959445	25.205	0.19715	25.205	25.129	25.326	0					11	5	3	0	0	0	0.047855	1	7547	7547		96.034	29.604	1	236720			40950	5373	27354	27464	41477	41477					0.07454340586002672
SVNSTVLVK	9	Unmodified	_SVNSTVLVK_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.78204345703125	2	473.782025	945.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.496	1	25.496	24.996	25.996	0								0	0	0	0.00080341	1	8719	8719		128.6	40.906	1				40951	5373	27354	27464	41478	41478					0.07454340586002672
SVNSTVLVK	9	Unmodified	_SVNSTVLVK_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7818298339844	2	473.782025	945.549496	-0.12658	-5.9973E-05	-0.56787	-0.00026905	-0.69446	-0.00032902	473.7818018388282	25.318	0.1512	25.318	25.222	25.373	0					6	3	2	0	0	0	0.019258	1	8020	8020		123.21	40.968	1	448460			40952	5373	27354	27464	41479	41479					0.07454340586002672
SVNSTVLVK	9	Unmodified	_SVNSTVLVK_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7816162109375	2	473.782025	945.549496	-0.58942	-0.00027926	0.04434	2.1008E-05	-0.54508	-0.00025825	473.78202859080125	25.423	0.42023	25.423	25.264	25.684	0					17	8	4	0	0	0	0.012936	1	8890	8890		134.77	55.053	1	3126000			40953	5373	27354	27464	41480	41480					0.07454340586002672
SVNSVAVLR	9	Unmodified	_SVNSVAVLR_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1;GIGYF1|p.G270Efs*75|1|0.29|ENSG00000146830|chr7:100686319-100686319|C/-|frameshift_variant;GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	ENSG00000146830|ENST00000678049|GIGYF1;GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.77947998046875	2	472.779816	943.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.862	1	28.862	28.362	29.362	0								0	0	0	0.11159	1	10623	10623		68.846	15.909	1				40954	4747;11156	27355	27465	41481	41481					0.07104876163100471
SVNTLSVK	8	Unmodified	_SVNTLSVK_					0	0	0			REV__nc|ENSG00000182985|Q9BY67-2|CADM1	REV__nc|ENSG00000182985|Q9BY67-2|CADM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	424.2352600097656	2	424.247818	846.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.289	1	20.289	19.789	20.789	0								0	0	0	1.7419	1	6270	6270		34.173	3.6689	1		+		40955	16904	27356	27466	41482	41482					0.05170096006145286
SVNVIRSPASE	11	Unmodified	_SVNVIRSPASE_					0	0	0			REV__nc|ENSG00000072042|Q8TC12-2|RDH11	REV__nc|ENSG00000072042|Q8TC12-2|RDH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.87445068359375	3	386.875293	1157.60405	0.13203	5.1078E-05	0.87613	0.00033895	1.0082	0.00039003	386.8744945363229	22.431	0.45787	22.431	22.302	22.76	0					24	9	4	0	0	0	0.65907	1	7596	7596		27.644	5.5684	1	665330	+		40956	13189	27357	27467	41483	41483					0.03155307666770568
SVNVLHLI	8	Unmodified	_SVNVLHLI_					0	0	0			REV__nc|ENSG00000163075|Q4G0U5-4|CFAP221	REV__nc|ENSG00000163075|Q4G0U5-4|CFAP221	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.77362060546875	2	447.774003	893.533452	-1.1743	-0.00052582	0.94674	0.00042392	-0.22756	-0.00010189	447.77439353530417	30.581	0.19824	30.581	30.474	30.672	0					10	7	2	0	0	0	0.58597	1	10058	10058		51.335	0	1	106270	+		40957	15857	27358	27468	41484	41484					0.0824267913977792
SVPADLSRPK	10	Unmodified	_SVPADLSRPK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.3043823242188	2	535.303655	1068.59276	0.59707	0.00031961	0.23993	0.00012844	0.837	0.00044805	535.3038125460854	21.473	0.72657	21.473	21.263	21.989	0					58	23	3	0	0	0	0.30252	1	6026	6026		66.962	22.845	1	351130			40958	1224	27359	27469	41485	41485					0.061205303632732466
SVPADLSRPK	10	Unmodified	_SVPADLSRPK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.3040161132812	2	535.303655	1068.59276	0.29132	0.00015594	0.29092	0.00015573	0.58224	0.00031168	535.303811687726	21.748	1.0103	21.748	21.441	22.451	0					60	20	4	0	0	0	0.09653	2	7343	7173;7343		96.034	37.787	1	2036300			40959	1224	27359	27469	41486;41487	41487					0.061205303632732466
SVPAHNVAI	9	Unmodified	_SVPAHNVAI_					0	0	0			REV__ENST00000491911.5_1_9:140508423-140509541:+|nuORF	REV__ENST00000491911.5_1_9:140508423-140509541:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2522277832031	2	454.253434	906.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.179	1	38.179	37.679	38.679	0								0	0	0	0.28996	1	14496	14496		37.159	5.2042	1		+		40960	17309	27360	27470	41488	41488					0.03532918100279403
SVPCHSQGQ	9	Unmodified	_SVPCHSQGQ_					0	0	0			REV__ENST00000570769.5_1_16:3690834-3690951:+|nuORF	REV__ENST00000570769.5_1_16:3690834-3690951:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7084655761719	2	471.708534	941.402514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.497	1	11.497	10.997	11.997	0								0	0	0	0.3428	1	2368	2368		26.693	1.2427	1		+		40961	20376	27361	27471	41489	41489					-0.07053079570584941
SVPDPELIK	9	Unmodified	_SVPDPELIK_					0	0	0		ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2818908691406	2	499.281857	996.549162	-0.014437	-7.2081E-06	-0.022773	-1.137E-05	-0.03721	-1.8578E-05	499.28185840345964	29.388	0.19445	29.388	29.295	29.49	0					8	4	2	0	0	0	0.22837	1	10885	10885		60.972	15.02	1	354140			40962	1515	27362	27472	41490	41490					0.05074920866138655
SVPEAQSAL	9	Unmodified	_SVPEAQSAL_					0	0	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000561017.1_1_15:80414070-80415156:+|nuORF	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.23504638671875	2	451.234907	900.455261	0.65307	0.00029469	-1.1284	-0.00050917	-0.47533	-0.00021448	451.23469090177167	32.324	0.45581	32.324	32.139	32.595	0					21	11	3	0	0	0	0.095583	1	11844	11844		80.455	24.95	1	179530			40963	1751	27363	27473	41491	41491					0.001052017638471625
SVPEAQSAL	9	Unmodified	_SVPEAQSAL_					0	0	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000561017.1_1_15:80414070-80415156:+|nuORF	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2347717285156	2	451.234907	900.455261	-1.1896	-0.0005368	0.88043	0.00039728	-0.30918	-0.00013951	451.2351243312043	32.098	0.50822	32.098	31.909	32.417	0					31	21	2	0	0	0	0.19605	1	10652	10652		62.107	7.3311	1	121330			40964	1751	27363	27473	41492	41492					0.001052017638471625
SVPEAQSAL	9	Unmodified	_SVPEAQSAL_					0	0	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000561017.1_1_15:80414070-80415156:+|nuORF	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.23486328125	2	451.234907	900.455261	0.70258	0.00031703	-0.69772	-0.00031483	0.0048619	2.1939E-06	451.2345689028711	32.298	0.56954	32.298	32.081	32.65	0					28	13	3	0	0	0	0.035062	1	12244	12244		104.06	24.606	1	557600			40965	1751	27363	27473	41493	41493					0.001052017638471625
SVPEAQSAL	9	Unmodified	_SVPEAQSAL_					0	0	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000561017.1_1_15:80414070-80415156:+|nuORF	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2346496582031	2	451.234907	900.455261	-0.13765	-6.2113E-05	0.53863	0.00024305	0.40098	0.00018093	451.23511918306804	32.07	0.32678	32.07	31.923	32.25	0					15	9	2	0	0	0	0.19605	1	11113	11113		62.107	3.3255	1	79885			40966	1751	27363	27473	41494	41494					0.001052017638471625
SVPEAQSAL	9	Unmodified	_SVPEAQSAL_					0	0	0		nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6;ENST00000561017.1_1_15:80414070-80415156:+|nuORF	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	nc|ENSG00000086666|Q6FIF0-2|ZFAND6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.23455810546875	2	451.234907	900.455261	-2.6089	-0.0011772	1.6083	0.00072573	-1.0006	-0.00045152	451.23575057140334	32.026	0.29026	32.026	31.948	32.239	0					13	8	2	0	0	0	0.21263	1	11103	11103		60.118	3.3972	1	96214			40967	1751	27363	27473	41495	41495					0.001052017638471625
SVPGILPSY	9	Unmodified	_SVPGILPSY_					0	0	0		ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;ENSG00000164080|ENST00000684192|RAD54L2	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7578125	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.173	1	43.173	42.673	43.673	0								0	0	0	0.23459	1	17272	17272		45.952	3.4775	1				40968	5651	27364	27474	41496	41496					0.03299266665953837
SVPGRHLPG	9	Unmodified	_SVPGRHLPG_					0	0	0		ENST00000372629.4_1_X:102842228-102842288:+|nuORF;TCEAL4|p.L180Cfs*49|1|0.66|ENSG00000133142|chrX:103587210-103587210|T/-|frameshift_variant	ENST00000372629.4_1_X:102842228-102842288:+|nuORF	ENST00000372629.4_1_X:102842228-102842288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.25531005859375	2	460.259051	918.503549	-0.45354	-0.00020875	-1.7148	-0.00078927	-2.1684	-0.00099802	460.25829317129984	31.028	0.30872	31.028	30.881	31.19	0					27	6	6	0	0	0	0.50461	1	11521	11521		31.955	0	1	4910000			40969	8980	27365	27475	41497	41497					0.04103740194409511
SVPGSQYLY	9	Unmodified	_SVPGSQYLY_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2508850097656	2	507.250557	1012.48656	0.86934	0.00044097	-1.3136	-0.00066631	-0.44424	-0.00022534	507.25006752121675	32.094	1.1799	32.094	31.735	32.915	0					54	29	3	0	0	0	0.48389	1	11746	11746		34.173	2.2177	1	147880			40970	7215	27366	27476	41498	41498					-0.0191822520206415
SVPHFIKIE	9	Unmodified	_SVPHFIKIE_					0	0	0		tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.3057861328125	2	535.305667	1068.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.587	1	21.587	21.087	22.087	0								0	0	0	0.31838	1	6285	6285		31.53	1.2121	1				40971	23003	27367	27477	41499	41499					0.06522619856968959
SVPHVHHSWH	10	Unmodified	_SVPHVHHSWH_					0	0	0			REV__ENST00000478149.5_1_3:49898261-49898405:-|nuORF	REV__ENST00000478149.5_1_3:49898261-49898405:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.2018127441406	3	408.200334	1221.57917	0.98755	0.00040312	2.4949	0.0010184	3.4824	0.0014215	408.2016105954631	27.127	0.1728	27.127	27.048	27.221	0					10	4	3	0	0	0	0.59277	1	9437	9437		35.152	4.5832	1	289020	+		40972	19560	27368	27478	41500	41500					-0.022752826252826708
SVPISKSTL	9	Unmodified	_SVPISKSTL_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2763366699219	2	466.276575	930.538597	-0.43791	-0.00020419	-0.18347	-8.5549E-05	-0.62139	-0.00028974	466.27650887213264	27.844	0.21389	27.844	27.742	27.956	0					17	7	3	0	0	0	0.28897	1	8622	8622		51.193	11.94	1	498370			40973	4235	27369	27479	41501	41501					0.07054938211717854
SVPKILNME	9	Unmodified	_SVPKILNME_					0	0	0		ENST00000528797.5_1_11:57413095-57413371:-|nuORF	ENST00000528797.5_1_11:57413095-57413371:-|nuORF	ENST00000528797.5_1_11:57413095-57413371:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7823486328125	2	515.78371	1029.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.485	1	30.485	29.985	30.985	0								0	0	0	0.31838	1	10387	10387		31.53	1.0262	1				40974	10403	27370	27480	41502	41502					0.039272673683626635
SVPLAATSM	9	Unmodified	_SVPLAATSM_					0	0	0		ENST00000507546.5_1_4:48833247-48850510:+|nuORF;ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;OCIAD1|p.E233Kfs*4|2|0.22|ENSG00000109180|chr4:48857355-48857355|A/-|frameshift_variant;ENSG00000109180|ENST00000264312|OCIAD1	ENST00000507546.5_1_4:48833247-48850510:+|nuORF	ENST00000507546.5_1_4:48833247-48850510:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.7280578613281	2	438.728403	875.442254	0.65659	0.00028807	-1.5693	-0.0006885	-0.9127	-0.00040043	438.72767457165867	38.336	0.14486	38.336	38.248	38.393	0					7	5	2	0	0	0	0.12239	1	15032	15032		74.255	22.92	1	80528			40975	2571	27371	27481	41503	41503					-0.0004495261988495258
SVPLMLIR	8	Unmodified	_SVPLMLIR_					0	0	0			REV__WDR53|p.D52Efs*45|1|0.08|ENSG00000185798|chr3:196561320-196561321|-/AAATCCTAGAC|frameshift_variant	REV__WDR53|p.D52Efs*45|1|0.08|ENSG00000185798|chr3:196561320-196561321|-/AAATCCTAGAC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7854919433594	2	464.786056	927.557558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.984	1	41.984	41.484	42.484	0								0	0	0	1.7419	1	16497	16497		31.955	0	1		+		40976	22292	27372	27482	41504	41504					0.09088196301786411
SVPLNIQGL	9	Unmodified	_SVPLNIQGL_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7768249511719	2	470.776742	939.538931	-0.43051	-0.00020267	-0.23559	-0.00011091	-0.6661	-0.00031359	470.77665583357253	32.578	0.24243	32.578	32.489	32.731	0					18	10	2	0	0	0	0.48389	1	10525	10525		34.173	0	1	197510			40977	4788	27373	27483	41505	41505					0.0667435793156983
SVPLSDALLNK	11	Unmodified	_SVPLSDALLNK_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK;ENST00000430061.2_1_6:80715671-80721208:+|nuORF;TTK|p.K192Sfs*18|6|0.28|ENSG00000112742|chr6:80010913-80010913|A/-|frameshift_variant;TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant;TTK|p.S162Vfs*9|1|0.34|ENSG00000112742|chr6:80010822-80010822|A/-|frameshift_variant	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8330078125	2	578.832246	1155.64994	-0.412	-0.00023848	0.47042	0.00027229	0.058426	3.3819E-05	578.8322427101897	39.741	0.1482	39.741	39.642	39.79	0					9	5	2	0	0	0	0.68382	1	15614	15614		29.17	2.374	1	45106			40978	2759	27374	27484	41506	41506					0.07833952849000525
SVPLWPDAPA	10	Unmodified	_SVPLWPDAPA_					0	0	0			REV__ENST00000404056.1_1_22:24179058-24179352:-|nuORF	REV__ENST00000404056.1_1_22:24179058-24179352:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7755737304688	2	526.7742	1051.53385	0.10228	5.388E-05	3.5553	0.0018728	3.6575	0.0019267	526.7751191002831	30.705	0.23848	30.705	30.596	30.835	0					12	5	3	0	0	0	0.44469	1	11105	11105		51.335	5.3632	1	323720	+		40979	18156	27375	27485	41507	41507					0.010140540689462796
SVPNVLAKAL	10	Unmodified	_SVPNVLAKAL_					0	0	0		nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	nc|ENSG00000050820|P56945-8|BCAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.3137512207031	2	506.313492	1010.61243	1.0862	0.00054994	-1.3682	-0.00069275	-0.28206	-0.00014281	506.3126723338789	37.99	0.46477	37.99	37.874	38.339	0					35	16	3	0	0	0	0.53919	1	14871	14871		36.447	19.082	1	686180			40980	11427	27376	27486	41508	41508					0.1075490637402936
SVPPPQVL	8	Unmodified	_SVPPPQVL_					0	0	0			REV__nc|ENSG00000213676|Q99941-2|ATF6B	REV__nc|ENSG00000213676|Q99941-2|ATF6B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.747314453125	2	418.747453	835.480354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.9	1	37.9	37.4	38.4	0								0	0	0	1.7419	1	14397	14397		25.45	1.2474	1		+		40981	17565	27377	27487	41509	41509					0.056033013570868206
SVPPSPTS	8	Unmodified	_SVPPSPTS_					0	0	0		SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	386.19781494140625	2	386.197793	770.381034	-0.14619	-5.6458E-05	-0.036883	-1.4244E-05	-0.18307	-7.0702E-05	386.19784528379984	17.916	0.2448	17.916	17.823	18.067	0					8	5	2	0	0	0	0.70055	1	4579	4579		33.516	0	1	212080			40982	5420	27378	27488	41510	41510					-0.01334141327663474
SVPQCCTTA	9	Unmodified	_SVPQCCTTA_					0	0	0			REV__KRTAP2-3|p.Q105R|1|0.4|ENSG00000212724|chr17:41059737-41059737|T/C|missense_variant	REV__KRTAP2-3|p.Q105R|1|0.4|ENSG00000212724|chr17:41059737-41059737|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.193603515625	2	455.193871	908.373188	0.12179	5.5437E-05	-0.80716	-0.00036742	-0.68538	-0.00031198	455.19352113606834	26.683	0.2833	26.683	26.552	26.836	0					12	6	3	0	0	0	0.50461	1	8622	8622		31.955	1.4512	1	136310	+	+	40983	12618	27379	27489	41511	41511					-0.08466359911119525
SVPQSLMSI	9	Unmodified	_SVPQSLMSI_					0	0	0		ENST00000318596.7_1_19:19222158-19222392:+|nuORF	ENST00000318596.7_1_19:19222158-19222392:+|nuORF	ENST00000318596.7_1_19:19222158-19222392:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.25494384765625	2	481.254785	960.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.206	1	43.206	42.706	43.706	0								0	0	0	0.27939	1	17287	17287		39.253	0	1				40984	8598	27380	27490	41512	41512					0.013190054429401243
SVPREPIDRK	10	Unmodified	_SVPREPIDRK_					0	0	0		ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.56298828125	3	399.56305	1195.66732	0.072503	2.8969E-05	-0.34303	-0.00013706	-0.27053	-0.00010809	399.56296049050866	18.164	0.37257	18.164	18.005	18.377	0					14	7	3	0	0	0	0.42408	1	5517	5517		53.597	14.843	1	710830			40985	6637	27381	27491	41513	41513					0.0773129317465191
SVPREPIDRK	10	Unmodified	_SVPREPIDRK_					0	0	0		ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.5629577636719	3	399.56305	1195.66732	-0.61675	-0.00024643	1.0536	0.00042099	0.43688	0.00017456	399.5633596555692	18.159	0.36035	18.159	18.027	18.387	0					19	7	4	0	0	0	0.60147	1	5380	5380		34.087	2.5567	1	1138400			40986	6637	27381	27491	41514	41514					0.0773129317465191
SVPSPLLLDR	10	Unmodified	_SVPSPLLLDR_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.2170104980469	3	366.21688	1095.62881	0.75273	0.00027566	-0.88654	-0.00032467	-0.13381	-4.9003E-05	366.2166355904103	24.101	0.53908	24.101	23.785	24.324	0					31	12	3	0	0	0	0.35046	1	8080	8080		61.691	5.059	1	315110	+		40987	17733	27382	27492	41515	41515					0.08481987540153568
SVPSSETVICR	11	Unmodified	_SVPSSETVICR_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.2984619140625	2	589.297713	1176.58087	1.0196	0.00060086	-0.97749	-0.00057603	0.042136	2.483E-05	589.2973773420144	29.207	0.93781	29.207	28.968	29.906	0					62	23	4	0	0	0	0.59204	1	10346	10346		37.508	12.058	1	807770			40988	5116	27383	27493	41516	41516					-0.00035454442217996984
SVPSSETVICR	11	Unmodified	_SVPSSETVICR_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.2977905273438	2	589.297713	1176.58087	-0.43686	-0.00025744	0.41379	0.00024385	-0.02307	-1.3595E-05	589.2981996594656	28.955	0.82287	28.955	28.668	29.491	0					72	32	3	0	0	0	0.63398	1	9490	9490		33.922	11.962	1	351420			40989	5116	27383	27493	41517	41517					-0.00035454442217996984
SVPSSETVICR	11	Carbamidomethyl (C)	_SVPSSETVIC(Carbamidomethyl (C))R_	SVPSSETVIC(1)R		SVPSSETVIC(79)R		0	1	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	617.808349609375	2	617.808445	1233.60234	-0.30014	-0.00018543	0.096402	5.9558E-05	-0.20374	-0.00012587	617.808626470396	27.7	0.72079	27.7	27.529	28.25	0					45	17	4	0	0	0	0.15663	2	9678	9678;9857		79.489	26.4	1	746860			40990	5116	27383	27494	41518;41519	41518	207				-0.005120694135030135
SVPSSETVICR	11	Carbamidomethyl (C)	_SVPSSETVIC(Carbamidomethyl (C))R_	SVPSSETVIC(1)R		SVPSSETVIC(55)R		0	1	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	617.80810546875	2	617.808445	1233.60234	0.25449	0.00015723	-0.45626	-0.00028188	-0.20177	-0.00012466	617.8081259909036	27.774	0.45616	27.774	27.586	28.042	0					21	9	3	0	0	0	0.37057	1	10120	10120		54.722	10.606	1	231480			40991	5116	27383	27494	41520	41520	207				-0.005120694135030135
SVPSVLYGH	9	Unmodified	_SVPSVLYGH_					0	0	0		ENST00000265056.11_2_3:127340622-127340844:+|nuORF	ENST00000265056.11_2_3:127340622-127340844:+|nuORF	ENST00000265056.11_2_3:127340622-127340844:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7528076171875	2	479.753267	957.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.785	1	45.785	45.285	46.285	0								0	0	0	0.31623	1	18345	18345		31.955	0	1				40992	8343	27384	27495	41521	41521					0.01153498380426754
SVPTSRVTL	9	Unmodified	_SVPTSRVTL_					0	0	0		ENST00000577379.5_1_17:79980635-79980701:-|nuORF	ENST00000577379.5_1_17:79980635-79980701:-|nuORF	ENST00000577379.5_1_17:79980635-79980701:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27960205078125	2	480.279649	958.544745	-0.5014	-0.00024081	0.13355	6.4144E-05	-0.36784	-0.00017667	480.2797053298922	30.084	0.56392	30.084	29.933	30.496	0					35	12	4	0	0	0	0.3269	1	11170	11170		47.96	13.787	1	1873800			40993	10837	27385	27496	41522	41522					0.06381456443239131
SVPTVPRN	8	Unmodified	_SVPTVPRN_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.24530029296875	2	435.245609	868.476666	-0.42718	-0.00018593	-0.062059	-2.7011E-05	-0.48924	-0.00021294	435.2456152023038	25.137	0.9382	25.137	24.726	25.664	0					56	22	5	0	0	0	0.65148	1	8609	8609		40.778	1.5253	1	6273100	+		40994	15587	27386	27497	41523	41523					0.037166315832337204
SVPVENFTI	9	Unmodified	_SVPVENFTI_					0	0	0		OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH	OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.26788330078125	2	503.266207	1004.51786	2.9291	0.0014741	-2.0531	-0.0010332	0.87605	0.00044089	503.2658123541961	31.394	0.45948	31.394	31.241	31.701	0					21	9	4	0	0	0	0.1424	1	11720	11720		69.628	0.8408	1	1184000			40995	2410	27387	27498	41524	41524					0.01578347832048621
SVPVSAVFMD	10	Unmodified	_SVPVSAVFMD_					0	0	0		ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant;ENSG00000128915|ENST00000261520|ICE2	ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant	ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2597045898438	2	526.260068	1050.50558	0.22223	0.00011695	-1.1716	-0.00061657	-0.94937	-0.00049962	526.2594631193784	18.13	0.27083	18.13	18.022	18.292	0					8	5	3	0	0	0	0.44469	1	5521	5521		51.335	5.3632	1	969200			40996	3570	27388	27499	41525	41525					-0.017650119026257016
SVPVSGTTVK	10	Unmodified	_SVPVSGTTVK_					0	0	0			REV__ENSG00000164171|ENST00000296585|ITGA2	REV__ENSG00000164171|ENST00000296585|ITGA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.78021240234375	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.287	1	14.287	13.787	14.787	0								0	0	0	0.33107	1	3672	3672		45.972	1.8554	1		+		40997	15969	27389	27500	41526	41526					0.056580367233777906
SVPVSLQTL	9	Unmodified	_SVPVSLQTL_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.27581787109375	2	472.276575	942.538597	2.4492	0.0011567	-3.1675	-0.0014959	-0.71831	-0.00033924	472.27477620382604	46.705	0.12735	46.705	46.606	46.734	0					8	5	2	0	0	0	0.21263	1	18685	18685		60.118	14.146	1	75351			40998	2972	27390	27501	41527	41527					0.06502938211713172
SVPVWGFK	8	Unmodified	_SVPVWGFK_					0	0	0		nc|ENSG00000204673|Q96B36-2|AKT1S1;ENSG00000204673|ENST00000344175|AKT1S1;nc|ENSG00000204673|Q96B36-3|AKT1S1	nc|ENSG00000204673|Q96B36-2|AKT1S1	nc|ENSG00000204673|Q96B36-2|AKT1S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2581787109375	2	460.255446	918.496338	4.2471	0.0019547	1.38	0.00063516	5.6271	0.0025899	460.256028102688	30.82	0.21719	30.82	30.749	30.967	0					13	7	2	0	0	0	0.66372	1	10168	10168		38.806	38.806	1	653100			40999	7719	27391	27502	41528	41528					0.03383007594004539
SVPWGDKFWT	10	Unmodified	_SVPWGDKFWT_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	408.20208740234375	3	408.201229	1221.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.968	1	26.968	26.468	27.468	0								0	0	0	0.41767	1	8761	8761		25.126	1.7481	1		+		41000	15181	27392	27503	41529	41529					-0.020068720109975402
SVPYGGIYVK	10	Unmodified	_SVPYGGIYVK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.7960815429688	2	541.797675	1081.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.727	1	11.727	11.227	12.227	0								0	0	0	0.4201	1	2319	2319		23.042	2.0956	1				41001	6227	27393	27504	41530	41530					0.04326913620070627
SVQAALKLK	9	Unmodified	_SVQAALKLK_					0	0	0		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.3086853027344	2	479.30821	956.601866	-0.001575	-7.5493E-07	-0.55237	-0.00026475	-0.55394	-0.00026551	479.3080806782414	25.522	0.18751	25.522	25.427	25.615	0					9	7	2	0	0	0	0.11898	1	7671	7671		75.043	25.602	1	126840			41002	5376	27394	27505	41531	41531					0.12182923719603878
SVQAALKLK	9	Unmodified	_SVQAALKLK_					0	0	0		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.3080749511719	2	479.30821	956.601866	-0.22238	-0.00010659	-0.72684	-0.00034838	-0.94922	-0.00045497	479.30801107135056	25.569	0.13074	25.569	25.489	25.62	0					7	4	2	0	0	0	0.14578	1	7955	7955		68.846	10.6	1	125230			41003	5376	27394	27505	41532	41532					0.12182923719603878
SVQAASGIRR	10	Unmodified	_SVQAASGIRR_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7994384765625	2	522.799072	1043.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.703	1	17.703	17.203	18.203	0								0	0	0	0.23484	1	4273	4273		59.931	4.8469	1				41004	7578	27395	27506	41533	41533					0.06354181797610181
SVQAASGIRR	10	Unmodified	_SVQAASGIRR_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.799072265625	2	522.799072	1043.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.006	1	18.006	17.506	18.506	0								0	0	0	0.01889	1	5186	5186		120.31	32.129	1				41005	7578	27395	27506	41534	41534					0.06354181797610181
SVQAPRKR	8	Unmodified	_SVQAPRKR_					0	0	0		ENST00000444265.6_1_6:22205474-22214638:+|nuORF	ENST00000444265.6_1_6:22205474-22214638:+|nuORF	ENST00000444265.6_1_6:22205474-22214638:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.287109375	2	471.2856	940.556647	3.8118	0.0017964	-0.65535	-0.00030886	3.1564	0.0014876	471.2852726438833	38.473	0.68172	38.473	38.112	38.794	0					89	36	3	0	0	0	0.66372	1	12963	12963		38.806	38.806	1	306290			41006	9604	27396	27507	41535	41535					0.08399117977091919
SVQAVLVGK	9	Unmodified	_SVQAVLVGK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant;MYCBP2|p.G651Efs*24|1|0.04|ENSG00000005810|chr13:77257781-77257782|-/ATTAGTTTTT|frameshift_variant;MYCBP2|p.K375Sfs*4|1|0.3|ENSG00000005810|chr13:77270014-77270014|T/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7796325683594	2	450.779285	899.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.948	1	28.948	28.448	29.448	0								0	0	0	0.015064	1	9090	9090		104.06	32.761	1				41007	964	27397	27508	41536	41536					0.09022661794199394
SVQAVLVGK	9	Unmodified	_SVQAVLVGK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant;MYCBP2|p.G651Efs*24|1|0.04|ENSG00000005810|chr13:77257781-77257782|-/ATTAGTTTTT|frameshift_variant;MYCBP2|p.K375Sfs*4|1|0.3|ENSG00000005810|chr13:77270014-77270014|T/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.77960205078125	2	450.779285	899.544017	0.19906	8.973E-05	0.494	0.00022268	0.69306	0.00031241	450.77955864070555	29.19	0.29248	29.19	29.101	29.394	0					13	7	3	0	0	0	0.035106	1	10406	10406		104.01	34.386	1	227480			41008	964	27397	27508	41537	41537					0.09022661794199394
SVQCMPVAK	9	Carbamidomethyl (C)	_SVQC(Carbamidomethyl (C))MPVAK_	SVQC(1)MPVAK		SVQC(64)MPVAK		0	1	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2552795410156	2	510.254262	1018.49397	4.0032	0.0020427	-2.6407	-0.0013474	1.3625	0.00069523	510.2532490700823	22.917	0.13311	22.917	22.854	22.987	0					6	4	2	0	0	0	0.18416	1	6824	6824		63.534	21.138	1	60159			41009	5390	27398	27509	41538	41538	221				-0.014535321976268278
SVQCMPVAK	9	Carbamidomethyl (C)	_SVQC(Carbamidomethyl (C))MPVAK_	SVQC(1)MPVAK		SVQC(55)MPVAK		0	1	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.25482177734375	2	510.254262	1018.49397	0.7457	0.0003805	-0.54873	-0.00027999	0.19698	0.00010051	510.254523671905	22.968	0.18114	22.968	22.838	23.019	0					8	4	3	0	0	0	0.25761	1	6943	6943		54.722	15.47	1	83388			41010	5390	27398	27509	41539	41539	221				-0.014535321976268278
SVQCMPVAK	9	Carbamidomethyl (C)	_SVQC(Carbamidomethyl (C))MPVAK_	SVQC(1)MPVAK		SVQC(73)MPVAK		0	1	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2537841796875	2	510.254262	1018.49397	-0.014954	-7.6303E-06	0.010608	5.4129E-06	-0.0043459	-2.2175E-06	510.2542626177433	23.092	0.36198	23.092	22.839	23.201	0					11	7	2	0	0	0	0.12834	1	7767	7767		72.879	35.068	1	785030			41011	5390	27398	27509	41540	41540	221				-0.014535321976268278
SVQDSSVLVQR	11	Unmodified	_SVQDSSVLVQR_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.3270874023438	2	609.327859	1216.64116	0.15688	9.5589E-05	-1.346	-0.00082014	-1.1891	-0.00072455	609.3272442070509	27.986	0.068943	27.986	27.948	28.017	0					4	2	2	0	0	0	0.13149	1	8697	8697		92.239	26.774	1	56362			41012	1689	27399	27510	41541	41541					0.04150979212499806
SVQDSSVLVQR	11	Unmodified	_SVQDSSVLVQR_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.3286743164062	2	609.327859	1216.64116	-0.67204	-0.00040949	0.86612	0.00052775	0.19408	0.00011826	609.3287143255741	28.246	0.2169	28.246	28.152	28.368	0					11	5	3	0	0	0	0.00071535	1	9970	9970		153.1	61.837	1	364450			41013	1689	27399	27510	41542	41542					0.04150979212499806
SVQDSSVLVQR	11	Unmodified	_SVQDSSVLVQR_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.3271484375	2	609.327859	1216.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.022	1	28.022	27.522	28.522	0								0	0	0	0.41594	1	8992	8992		37.508	5.9784	1				41014	1689	27399	27510	41543	41543					0.04150979212499806
SVQDSSVLVQR	11	Unmodified	_SVQDSSVLVQR_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.3279418945312	2	609.327859	1216.64116	0.5154	0.00031405	-0.15684	-9.557E-05	0.35855	0.00021848	609.3276647175987	28.266	0.16234	28.266	28.157	28.319	0					6	3	2	0	0	0	0.00052769	1	10347	10347		144.77	57.072	1	280500			41015	1689	27399	27510	41544	41544					0.04150979212499806
SVQDVIYVR	9	Unmodified	_SVQDVIYVR_					0	0	0		ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.79931640625	2	539.798206	1077.58186	1.5876	0.000857	0.33848	0.00018271	1.9261	0.0010397	539.7983921927349	35.654	0.15608	35.654	35.613	35.769	0					12	7	2	0	0	0	0.076532	1	11698	11698		85.862	31.139	1	107630			41016	1928	27400	27511	41545	41545					0.046171279889904326
SVQDVIYVR	9	Unmodified	_SVQDVIYVR_					0	0	0		ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7987060546875	2	539.798206	1077.58186	1.961	0.0010586	-1.121	-0.00060513	0.84	0.00045343	539.7975933681528	35.944	0.39297	35.944	35.829	36.222	0					21	10	3	0	0	0	0.0088974	1	13510	13510		143.37	52.773	1	609070			41017	1928	27400	27511	41546	41546					0.046171279889904326
SVQDVIYVR	9	Unmodified	_SVQDVIYVR_					0	0	0		ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7985229492188	2	539.798206	1077.58186	-0.087013	-4.6969E-05	1.0677	0.00057634	0.98068	0.00052937	539.798923043291	35.721	0.24355	35.721	35.599	35.843	0					20	12	2	0	0	0	0.099758	2	12076	12076;12082		79.489	24.713	1	164870			41018	1928	27400	27511	41547;41548	41547					0.046171279889904326
SVQDVIYVR	9	Unmodified	_SVQDVIYVR_					0	0	0		ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7987060546875	2	539.798206	1077.58186	2.1689	0.0011707	-1.4224	-0.00076783	0.74641	0.00040291	539.79785115992	35.712	0.065475	35.712	35.675	35.74	0					4	2	2	0	0	0	0.30257	1	12738	12738		50.034	11.28	1	35601			41019	1928	27400	27511	41549	41549					0.046171279889904326
SVQDVIYVR	9	Unmodified	_SVQDVIYVR_					0	0	0		ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7991333007812	2	539.798206	1077.58186	1.0226	0.00055198	-0.10647	-5.7473E-05	0.91609	0.0004945	539.7981884843773	35.716	0.2489	35.716	35.644	35.893	0					13	9	2	0	0	0	0.099758	1	12735	12735		79.489	31.53	1	272870			41020	1928	27400	27511	41550	41550					0.046171279889904326
SVQDVIYVR	9	Unmodified	_SVQDVIYVR_					0	0	0		ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7986450195312	2	539.798206	1077.58186	0.67483	0.00036427	0.44685	0.00024121	1.1217	0.00060548	539.7984348813837	35.871	0.31053	35.871	35.737	36.047	0					12	6	3	0	0	0	0.021015	1	13884	13884		120.31	34.444	1	333860			41021	1928	27400	27511	41551	41551					0.046171279889904326
SVQDVIYVR	9	Unmodified	_SVQDVIYVR_					0	0	0		ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7988891601562	2	539.798206	1077.58186	2.0863	0.0011262	-1.0142	-0.00054744	1.0721	0.00057871	539.7976244265587	35.873	0.46276	35.873	35.721	36.183	0					23	9	4	0	0	0	0.017741	1	13875	13875		125.71	44.188	1	1418000			41022	1928	27400	27511	41552	41552					0.046171279889904326
SVQEGIKFK	9	Unmodified	_SVQEGIKFK_					0	0	0		ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2953491210938	2	518.295299	1034.57605	0.46163	0.00023926	0.61851	0.00032057	1.0801	0.00055983	518.295387981638	24.576	0.15425	24.576	24.462	24.616	0					7	4	2	0	0	0	0.085655	1	7261	7261		82.75	7.7072	1	144490			41023	3530	27401	27512	41553	41553					0.06014029477319127
SVQEGIKFK	9	Unmodified	_SVQEGIKFK_					0	0	0		ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2953491210938	2	518.295299	1034.57605	0.052232	2.7071E-05	0.066611	3.4524E-05	0.11884	6.1596E-05	518.2953150567457	24.861	0.21572	24.861	24.726	24.941	0					12	5	3	0	0	0	0.019258	1	8413	8413		123.21	13.73	1	860780			41024	3530	27401	27512	41554	41554					0.06014029477319127
SVQENIQQK	9	Unmodified	_SVQENIQQK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2831420898438	2	537.28292	1072.55129	0.74851	0.00040216	-0.2435	-0.00013083	0.50502	0.00027134	537.2827862621583	19.028	0.26539	19.028	18.93	19.196	0					17	8	4	0	0	0	0.0023831	1	4835	4835		172.25	18.13	1	2289100			41025	4234	27402	27513	41555	41555					0.017913496039454913
SVQENIQQK	9	Unmodified	_SVQENIQQK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2833862304688	2	537.28292	1072.55129	0.21453	0.00011527	0.21708	0.00011663	0.43162	0.0002319	537.2829539405029	19.347	0.41384	19.347	19.155	19.569	0					22	9	4	0	0	0	0.0047071	1	5807	5807		159.28	5.1575	1	12762000			41026	4234	27402	27513	41556	41556					0.017913496039454913
SVQENIQQK	9	Unmodified	_SVQENIQQK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2833251953125	2	537.28292	1072.55129	0.29398	0.00015795	-0.034557	-1.8567E-05	0.25942	0.00013938	537.2829226849301	19.255	0.2154	19.255	19.148	19.363	0					12	4	4	0	0	0	0.0023831	1	6043	6043		172.25	5.0198	1	2549900			41027	4234	27402	27513	41557	41557					0.017913496039454913
SVQENIQQK	9	Unmodified	_SVQENIQQK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2832641601562	2	537.28292	1072.55129	-1.4194	-0.00076264	2.1716	0.0011668	0.75219	0.00040414	537.2841180409176	19.101	0.26542	19.101	19.009	19.274	0					11	6	2	0	0	0	0.00072198	1	5127	5127		185.72	18.49	1	2380600			41028	4234	27402	27513	41558	41558					0.017913496039454913
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.33056640625	2	557.329339	1112.64412	1.4235	0.00079336	1.0551	0.00058807	2.4787	0.0013814	557.3300607933832	35.228	0.15807	35.228	35.153	35.311	0					13	7	2	0	0	0	0.13663	1	11540	11540		89.029	12.859	1	134800			41029	6144	27403	27514	41559	41559					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.3301391601562	2	557.329339	1112.64412	1.8057	0.0010064	-1.0729	-0.00059794	0.73281	0.00040842	557.3287988454497	35.518	0.30652	35.518	35.416	35.722	0					19	8	3	0	0	0	0.019261	1	13309	13309		125.71	13.302	1	685930			41030	6144	27403	27514	41560	41560					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.330078125	2	557.329339	1112.64412	0.55044	0.00030678	0.077792	4.3356E-05	0.62823	0.00035013	557.3296833969337	35.524	0.23329	35.524	35.406	35.64	0					12	6	3	0	0	0	0.057264	1	13321	13321		106.88	21.018	1	200670			41031	6144	27403	27514	41561	41561					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.329833984375	2	557.329339	1112.64412	1.7199	0.00095858	-0.93586	-0.00052158	0.78409	0.00043699	557.3288229964736	35.496	0.33346	35.496	35.382	35.716	0					23	9	4	0	0	0	0.0083517	1	13747	13747		150.81	21.389	1	1405500			41032	6144	27403	27514	41562	41562					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.3294677734375	2	557.329339	1112.64412	1.125	0.00062702	1.127	0.0006281	2.252	0.0012551	557.3299569302321	35.294	0.25493	35.294	35.192	35.447	0					16	9	3	0	0	0	0.065778	1	12556	12556		104.01	31.134	1	176150			41033	6144	27403	27514	41563	41563					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.3291625976562	2	557.329339	1112.64412	-0.91468	-0.00050978	1.5082	0.00084056	0.5935	0.00033078	557.3301954879892	35.288	0.16917	35.288	35.209	35.378	0					15	6	3	0	0	0	0.11826	1	12550	12550		92.239	16.069	1	173200			41034	6144	27403	27514	41564	41564					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3299560546875	2	557.329339	1112.64412	1.8242	0.0010167	-0.9576	-0.0005337	0.86658	0.00048297	557.3287481540513	35.424	0.32365	35.424	35.313	35.637	0					20	6	4	0	0	0	0.010919	1	13683	13683		139.38	32.699	1	2143000			41035	6144	27403	27514	41565	41565					0.0923085433732922
SVQEYFVRK	9	Unmodified	_SVQEYFVRK_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.3114013671875	2	578.31148	1154.60841	0.81361	0.00047052	-0.8806	-0.00050926	-0.066993	-3.8743E-05	578.3109781323665	28.329	0.22714	28.329	28.24	28.467	0					13	7	3	0	0	0	0.076532	1	8829	8829		69.628	12.995	1	146640			41036	5607	27404	27515	41566	41566					0.037288168803115695
SVQEYFVRK	9	Unmodified	_SVQEYFVRK_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.3118286132812	2	578.31148	1154.60841	-0.059849	-3.4611E-05	0.43119	0.00024936	0.37134	0.00021475	578.3117268309941	28.598	0.21142	28.598	28.474	28.686	0					18	5	4	0	0	0	0.037098	1	10109	10109		96.034	25.217	1	1267900			41037	5607	27404	27515	41567	41567					0.037288168803115695
SVQEYFVRK	9	Unmodified	_SVQEYFVRK_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.8768005371094	3	385.876746	1154.60841	0.17978	6.9371E-05	-0.36736	-0.00014176	-0.18758	-7.2384E-05	385.8766055982122	28.589	0.41198	28.589	28.482	28.894	0					24	8	4	0	0	0	0.15558	1	10479	10479		66.962	35.328	1	956830			41038	5607	27404	27515	41568	41568					0.037288168803115695
SVQEYFVRK	9	Unmodified	_SVQEYFVRK_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	385.8767395019531	3	385.876746	1154.60841	0.25621	9.8866E-05	0.051048	1.9698E-05	0.30726	0.00011856	385.87670046014654	28.382	0.17039	28.382	28.296	28.467	0					9	4	3	0	0	0	0.30841	1	9422	9422		49.536	15.614	1	76680			41039	5607	27404	27515	41569	41569					0.037288168803115695
SVQEYFVRK	9	Unmodified	_SVQEYFVRK_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.3121948242188	2	578.31148	1154.60841	-1.6507	-0.00095463	2.405	0.0013908	0.75424	0.00043618	578.3130982217529	28.399	0.16353	28.399	28.313	28.477	0					10	4	3	0	0	0	0.18505	1	9407	9407		56.434	24.479	1	154110			41040	5607	27404	27515	41570	41570					0.037288168803115695
SVQEYFVRK	9	Unmodified	_SVQEYFVRK_					0	0	0		TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.3123779296875	2	578.31148	1154.60841	3.262	0.0018864	-2.0014	-0.0011574	1.2605	0.00072898	578.3103862620018	28.534	0.21446	28.534	28.426	28.641	0					14	4	4	0	0	0	0.0040239	1	10359	10359		146.79	53.642	1	1640400			41041	5607	27404	27515	41571	41571					0.037288168803115695
SVQGAALVQIK	11	Unmodified	_SVQGAALVQIK_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;chr16:1980728-1980939|449|16.41|0.86|4.26|-|ENST00000566005|NOXO1,NOXO1;chr16:1980544-1980641|439|11.94|0.64|4.22|-|ENST00000566005|NOXO1,NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.335205078125	2	557.334956	1112.65536	0.55016	0.00030662	-0.094094	-5.2442E-05	0.45607	0.00025418	557.3348394848807	33.412	0.40909	33.412	33.288	33.698	0					31	10	5	0	0	0	4.7211E-09	2	12340	12323;12340		232.72	97.955	1	5386200			41042	522	27405	27516	41572;41573	41573					0.10353676431441272
SVQGAALVQIK	11	Unmodified	_SVQGAALVQIK_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;chr16:1980728-1980939|449|16.41|0.86|4.26|-|ENST00000566005|NOXO1,NOXO1;chr16:1980544-1980641|439|11.94|0.64|4.22|-|ENST00000566005|NOXO1,NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.3348999023438	2	557.334956	1112.65536	-0.48312	-0.00026926	0.98126	0.00054689	0.49815	0.00027763	557.3354873404368	33.211	0.30201	33.211	33.109	33.411	0					31	12	4	0	0	0	0.00052769	1	11106	11106		133.75	34.739	1	1031200			41043	522	27405	27516	41574	41574					0.10353676431441272
SVQGAALVQIK	11	Unmodified	_SVQGAALVQIK_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;chr16:1980728-1980939|449|16.41|0.86|4.26|-|ENST00000566005|NOXO1,NOXO1;chr16:1980544-1980641|439|11.94|0.64|4.22|-|ENST00000566005|NOXO1,NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.3352661132812	2	557.334956	1112.65536	-0.1722	-9.5972E-05	0.59609	0.00033222	0.4239	0.00023625	557.3352312933001	33.381	0.43484	33.381	33.246	33.681	0					27	10	4	0	0	0	4.7948E-18	1	12760	12760		246.93	100.15	1	5856900			41044	522	27405	27516	41575	41575					0.10353676431441272
SVQGAALVQIK	11	Unmodified	_SVQGAALVQIK_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;chr16:1980728-1980939|449|16.41|0.86|4.26|-|ENST00000566005|NOXO1,NOXO1;chr16:1980544-1980641|439|11.94|0.64|4.22|-|ENST00000566005|NOXO1,NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.337646484375	2	557.334956	1112.65536	-0.91342	-0.00050908	1.954	0.001089	1.0406	0.00057994	557.3360939084689	33.174	0.27224	33.174	33.057	33.33	0					21	8	4	0	0	0	0.020117	1	11595	11595		123.11	66.479	1	389420			41045	522	27405	27516	41576	41576					0.10353676431441272
SVQGAALVQIK	11	Unmodified	_SVQGAALVQIK_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;chr16:1980728-1980939|449|16.41|0.86|4.26|-|ENST00000566005|NOXO1,NOXO1;chr16:1980544-1980641|439|11.94|0.64|4.22|-|ENST00000566005|NOXO1,NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3359985351562	2	557.334956	1112.65536	3.4932	0.0019469	-2.0953	-0.0011678	1.3979	0.00077908	557.3339351895482	33.367	0.46616	33.367	33.167	33.633	0					22	9	4	0	0	0	4.7211E-09	1	12666	12666		218.94	106.53	1	2817500			41046	522	27405	27516	41577	41577					0.10353676431441272
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7643432617188	2	524.764166	1047.51378	0.69686	0.00036568	0.17885	9.3852E-05	0.8757	0.00045954	524.7642640380103	42.42	0.15044	42.42	42.347	42.497	0					17	9	2	0	0	0	0.27249	1	13490	13490		52.937	19.421	1	88108			41047	6787	27406	27517	41578	41578					-0.008076968710156507
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7640380859375	2	524.764166	1047.51378	0.094232	4.945E-05	0.39351	0.0002065	0.48774	0.00025595	524.7643399100585	42.727	0.35024	42.727	42.622	42.972	0					40	17	3	0	0	0	0.35021	1	16149	16149		45.972	3.4978	1	529920			41048	6787	27406	27517	41579	41579					-0.008076968710156507
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.76611328125	2	524.764166	1047.51378	0.5901	0.00030967	1.169	0.00061345	1.7591	0.00092312	524.7645638213261	42.532	0.17263	42.532	42.448	42.621	0					18	10	2	0	0	0	0.19605	1	14002	14002		62.107	24.948	1	69239			41049	6787	27406	27517	41580	41580					-0.008076968710156507
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7645263671875	2	524.764166	1047.51378	1.7786	0.00093332	-2.0942	-0.0010989	-0.31563	-0.00016563	524.7635422291606	42.697	0.48799	42.697	42.541	43.029	0					65	24	5	0	0	0	0.037924	1	16737	16737		101.25	41.134	1	762300			41050	6787	27406	27517	41581	41581					-0.008076968710156507
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7640991210938	2	524.764166	1047.51378	0.10763	5.6481E-05	0.4052	0.00021263	0.51283	0.00026911	524.764151448573	42.679	0.13442	42.679	42.627	42.761	0					11	6	2	0	0	0	0.39215	1	16734	16734		42.396	1.618	1	56379			41051	6787	27406	27517	41582	41582					-0.008076968710156507
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7648315429688	2	524.764166	1047.51378	-1.256	-0.00065909	2.7134	0.0014239	1.4574	0.00076479	524.765658884172	42.485	0.22451	42.485	42.395	42.62	0					20	13	2	0	0	0	0.17854	1	14836	14836		64.207	18.255	1	79995			41052	6787	27406	27517	41583	41583					-0.008076968710156507
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.811767578125	2	524.811116	1047.60768	1.42	0.00074521	-0.48501	-0.00025454	0.93495	0.00049067	524.8110761913166	37.013	0.13404	37.013	36.939	37.074	0					12	7	2	0	0	0	0.076532	1	12128	12128		85.862	25.744	1	78075			41053	952	27407	27518	41584	41584					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8116455078125	2	524.811116	1047.60768	0.69009	0.00036217	-0.10352	-5.433E-05	0.58657	0.00030784	524.8109689757125	37.013	0.53091	37.013	36.885	37.416	0					73	28	5	0	0	0	0.017421	2	12112	12112;12221		126.24	7.1167	1	3281000			41054	952	27407	27518	41585;41586	41585					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8123168945312	2	524.811116	1047.60768	1.8577	0.00097493	-0.90063	-0.00047266	0.95705	0.00050227	524.8106980264118	37.327	0.25098	37.327	37.219	37.47	0					19	7	3	0	0	0	0.02429	1	14125	14125		114.89	27.198	1	390080			41055	952	27407	27518	41587	41587					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8111572265625	2	524.811116	1047.60768	0.094598	4.9646E-05	0.22905	0.00012021	0.32365	0.00016985	524.8110126499544	37.321	0.50084	37.321	37.168	37.669	0					55	14	5	0	0	0	0.0067848	2	14114	14114;14271		150.36	40.242	1	21392000			41056	952	27407	27518	41588;41589	41588					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8112182617188	2	524.811116	1047.60768	0.58031	0.00030455	-0.21474	-0.0001127	0.36557	0.00019186	524.8109554735747	37.065	0.49963	37.065	36.945	37.444	0					83	27	5	0	0	0	0.0047071	2	12531	12531;12640		159.28	26.406	1	5230200			41057	952	27407	27518	41590;41591	41590					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8111572265625	2	524.811116	1047.60768	0.42549	0.0002233	0.16747	8.7892E-05	0.59296	0.00031119	524.8111048327049	37.081	0.22906	37.081	36.997	37.226	0					24	12	3	0	0	0	0.12278	1	12538	12538		74.165	15.935	1	222610			41058	952	27407	27518	41592	41592					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8114624023438	2	524.811116	1047.60768	0.11861	6.2247E-05	0.57833	0.00030351	0.69694	0.00036576	524.8114183998247	37.269	0.41298	37.269	37.178	37.591	0					35	12	4	0	0	0	0.017421	1	14552	14552		126.24	38.546	1	1529400			41059	952	27407	27518	41593	41593					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.8121337890625	2	524.811116	1047.60768	1.1572	0.00060732	-0.39962	-0.00020973	0.75759	0.00039759	524.8108532610157	37.054	0.50958	37.054	36.947	37.457	0					67	24	4	0	0	0	0.0047071	2	13255	13255;13379		159.28	24.465	1	3634800			41060	952	27407	27518	41594;41595	41594					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000005022|ENST00000317881|SLC25A5	ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8111572265625	2	524.811116	1047.60768	1.6268	0.00085374	-1.2553	-0.00065881	0.37143	0.00019493	524.8103390947773	37.211	0.98452	37.211	37.054	38.039	0					70	20	5	0	0	0	0.003936	2	14513	14513;14682		163.15	40.975	1	37970000			41061	952	27407	27518	41596;41597	41596					0.08578022231267823
SVQGLHSPHS	10	Unmodified	_SVQGLHSPHS_					0	0	0		ENST00000547709.1_1_17:6919595-6920637:+|nuORF	ENST00000547709.1_1_17:6919595-6920637:+|nuORF	ENST00000547709.1_1_17:6919595-6920637:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7622680664062	2	524.762155	1047.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.357	1	30.357	29.857	30.857	0								0	0	0	0.37602	1	10327	10327		37.812	2.6333	1				41062	10591	27408	27519	41598	41598					-0.012097863647113627
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.2763061523438	2	542.275095	1082.53564	1.7984	0.0009752	-0.93868	-0.00050902	0.85967	0.00046618	542.2745412328314	15.383	0.19339	15.383	15.307	15.501	0					21	8	4	0	0	0	0.01098	1	3326	3326		139.15	71.659	1	1372600			41063	10897	27409	27520	41599	41599					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.27490234375	2	542.275095	1082.53564	1.8874	0.0010235	-1.9047	-0.0010329	-0.017241	-9.3491E-06	542.2738957623201	15.661	0.42038	15.661	15.571	15.991	0					29	10	5	0	0	0	0.0084686	1	4100	4100		150.15	73.378	1	10478000			41064	10897	27409	27520	41600	41600					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.8524475097656	3	361.852489	1082.53564	-0.93906	-0.0003398	0.57306	0.00020736	-0.366	-0.00013244	361.85273103719027	15.408	0.14618	15.408	15.348	15.494	0					12	5	3	0	0	0	0.63851	1	3497	3497		48.188	25.608	1	365690			41065	10897	27409	27520	41601	41601					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.275390625	2	542.275095	1082.53564	0.21435	0.00011624	0.31754	0.0001722	0.5319	0.00028843	542.2752983547739	15.417	0.14618	15.417	15.348	15.494	0					14	5	4	0	0	0	0.01242	1	3498	3498		133.75	62.936	1	462280			41066	10897	27409	27520	41602	41602					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.8523864746094	3	361.852489	1082.53564	1.4133	0.00051141	-0.97642	-0.00035332	0.43689	0.00015809	361.8521562816156	15.626	0.41211	15.626	15.567	15.979	0					26	8	5	0	0	0	0.078327	1	4319	4319		131.42	78.329	1	5089600			41067	10897	27409	27520	41603	41603					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.2764282226562	2	542.275095	1082.53564	2.0935	0.0011353	-0.62073	-0.00033661	1.4728	0.00079867	542.2747174389469	15.423	0.1423	15.423	15.354	15.496	0					12	4	4	0	0	0	0.0084686	1	3450	3450		150.15	76.177	1	940030			41068	10897	27409	27520	41604	41604					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.275390625	2	542.275095	1082.53564	1.0634	0.00057664	-0.3026	-0.00016409	0.76078	0.00041255	542.2749552954016	15.415	0.20495	15.415	15.341	15.546	0					15	6	4	0	0	0	0.009541	1	3458	3458		144.55	64.837	1	1334400			41069	10897	27409	27520	41605	41605					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2753295898438	2	542.275095	1082.53564	0.62822	0.00034067	-0.21359	-0.00011582	0.41464	0.00022485	542.2748485911987	15.656	0.36767	15.656	15.546	15.913	0					22	7	5	0	0	0	0.01098	1	4160	4160		139.15	73.688	1	5009800			41070	10897	27409	27520	41606	41606					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2755737304688	2	542.275095	1082.53564	2.0367	0.0011045	-2.2194	-0.0012035	-0.18275	-9.9099E-05	542.2737170299828	15.639	0.46777	15.639	15.529	15.997	0					25	9	4	0	0	0	0.0084686	1	4155	4155		150.15	65.236	1	14973000			41071	10897	27409	27520	41607	41607					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.85247802734375	3	361.852489	1082.53564	1.1719	0.00042405	-0.23163	-8.3817E-05	0.94024	0.00034023	361.85238547126687	15.639	0.36731	15.639	15.529	15.896	0					13	7	2	0	0	0	0.27406	1	4176	4176		100.82	53.162	1	2754000			41072	10897	27409	27520	41608	41608					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.8524169921875	3	361.852489	1082.53564	3.1174	0.001128	-2.7868	-0.0010084	0.33062	0.00011963	361.8514952050004	15.622	0.46691	15.622	15.513	15.98	0					22	9	4	0	0	0	0.3029	1	4169	4169		96.756	52.116	1	3410600			41073	10897	27409	27520	41609	41609					-0.0023293691310755094
SVQKAQNKF	9	Unmodified	_SVQKAQNKF_					0	0	0			REV__ENST00000507812.5_1_5:49961757-49961832:+|nuORF	REV__ENST00000507812.5_1_5:49961757-49961832:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2926025390625	2	525.290548	1048.56654	3.4444	0.0018093	0.57707	0.00030313	4.0214	0.0021124	525.290857766539	42.514	1.0343	42.514	42.323	43.357	0					61	31	3	0	0	0	0.13267	1	17112	17112		71.877	13.096	1	295310	+		41074	19847	27410	27521	41610	41610					0.044202611917853574
SVQKGVNSQK	10	Unmodified	_SVQKGVNSQK_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.799072265625	2	537.798737	1073.58292	0.29616	0.00015927	0.41704	0.00022428	0.7132	0.00038356	537.7990015505135	12.584	0.17316	12.584	12.537	12.71	0					9	4	3	0	0	0	0.0077833	1	2874	2874		154.01	58.196	1	1520400			41075	4248	27411	27522	41611	41611					0.04907342357910238
SVQKQANEK	9	Unmodified	_SVQKQANEK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2775268554688	2	516.277638	1030.54072	1.4579	0.0007527	-0.018512	-9.5573E-06	1.4394	0.00074314	516.2774802068182	11.128	0.072783	11.128	11.064	11.137	0					4	2	2	0	0	0	0.0028263	1	2204	2204		169.65	22.867	1	285730			41076	3193	27412	27523	41612	41612					0.026673669495039576
SVQKQMKILQK	11	Unmodified	_SVQKQMKILQK_					0	0	0		nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2667236328125	3	444.267357	1329.78024	-0.070374	-3.1265E-05	-1.1409	-0.00050689	-1.2113	-0.00053815	444.2669604873563	21.92	0.11076	21.92	21.837	21.948	0					4	2	2	0	0	0	0.29048	1	7039	7039		63.694	5.0645	1	59418			41077	1752	27413	27524	41613	41613					0.12854225576347744
SVQKSSGVK	9	Unmodified	_SVQKSSGVK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.S665L|1|0.2|ENSG00000122786|chr7:134958223-134958223|C/T|missense_variant	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2640380859375	2	460.263999	918.513445	0.1357	6.2456E-05	0.79145	0.00036428	0.92714	0.00042673	460.2643906584559	12.076	0.062282	12.076	12.016	12.079	0					4	2	2	0	0	0	0.11411	1	2460	2460		76.17	7.685	1	96610			41078	3289	27414	27525	41614	41614					0.05092883409145088
SVQKSSGVK	9	Unmodified	_SVQKSSGVK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.S665L|1|0.2|ENSG00000122786|chr7:134958223-134958223|C/T|missense_variant	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2637634277344	2	460.263999	918.513445	-0.15315	-7.0491E-05	-0.45314	-0.00020856	-0.60629	-0.00027905	460.26381990001175	12.119	0.30262	12.119	12.068	12.37	0					11	7	3	0	0	0	0.014413	1	2657	2657		131.62	27.559	1	2010500			41079	3289	27414	27525	41615	41615					0.05092883409145088
SVQKSSGVK	9	Unmodified	_SVQKSSGVK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.S665L|1|0.2|ENSG00000122786|chr7:134958223-134958223|C/T|missense_variant	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.26397705078125	2	460.263999	918.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.05	1	12.05	11.55	12.55	0								0	0	0	0.058887	1	2473	2473		83.647	16.153	1				41080	3289	27414	27525	41616	41616					0.05092883409145088
SVQLSITKK	9	Unmodified	_SVQLSITKK_					0	0	0		ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.31072998046875	2	502.310949	1002.60735	-0.044954	-2.2581E-05	-0.057663	-2.8965E-05	-0.10262	-5.1545E-05	502.31072909735116	22.869	0.11371	22.869	22.804	22.918	0					8	3	3	0	0	0	0.18416	1	6542	6542		63.534	10.597	1	282180			41081	9345	27415	27526	41617	41617					0.10614602511407156
SVQLSITKK	9	Unmodified	_SVQLSITKK_					0	0	0		ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.31085205078125	2	502.310949	1002.60735	-0.071563	-3.5947E-05	-0.13961	-7.0128E-05	-0.21117	-0.00010608	502.31080961781555	23.218	0.14031	23.218	23.123	23.263	0					12	3	4	0	0	0	0.026848	1	7661	7661		112.11	21.506	1	1561800			41082	9345	27415	27526	41618	41618					0.10614602511407156
SVQLTEKRMDK	11	Unmodified	_SVQLTEKRMDK_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.5748291015625	3	445.574738	1333.70238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.385	1	19.385	18.885	19.885	0								0	0	0	0.45674	1	5240	5240		24.232	4.9691	1				41083	3430	27416	27527	41619	41619					0.04888167920307751
SVQLTEKRMDK	11	Unmodified	_SVQLTEKRMDK_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.574462890625	3	445.574738	1333.70238	-0.45605	-0.0002032	0.048556	2.1635E-05	-0.40749	-0.00018157	445.574679553756	19.549	0.21404	19.549	19.492	19.706	0					9	4	3	0	0	0	0.41029	1	6073	6073		50.791	10.733	1	951350			41084	3430	27416	27527	41620	41620					0.04888167920307751
SVQPSHLFIQ	10	Unmodified	_SVQPSHLFIQ_					0	0	0		ENST00000461023.5_1_16:343426-396314:-|nuORF;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	ENST00000461023.5_1_16:343426-396314:-|nuORF	ENST00000461023.5_1_16:343426-396314:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.876708984375	3	385.876746	1154.60841	0.85167	0.00032864	-0.9662	-0.00037283	-0.11453	-4.4196E-05	385.876323282396	28.567	0.37067	28.567	28.486	28.857	0					27	9	4	0	0	0	0.66699	1	10102	10102		26.063	0.48933	1	1216400			41085	2215	27417	27528	41621	41621					0.037288168803115695
SVQQLFSTL	9	Unmodified	_SVQQLFSTL_					0	0	0		nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2;ENST00000380416.5_1_7:6042077-6048650:-|nuORF;nc|ENSG00000122512|P54278-4|PMS2;nc|ENSG00000122512|P54278-2|PMS2	nc|ENSG00000122512|P54278-3|PMS2	nc|ENSG00000122512|P54278-3|PMS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.779541015625	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.556	1	34.556	34.056	35.056	0								0	0	0	0.27025	1	11303	11303		40.778	2.9666	1				41086	3269	27418	27529	41622	41622					0.034500367233818
SVQQTVQAL	9	Unmodified	_SVQQTVQAL_					0	0	0			REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF	REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.26904296875	2	487.269281	972.52401	-0.33434	-0.00016292	-0.25211	-0.00012284	-0.58645	-0.00028576	487.2691645119563	13.376	0.12487	13.376	13.292	13.417	0					6	3	2	0	0	0	0.056004	1	3036	3036		93.143	0	1	580080	+		41087	20566	27419	27530	41623	41623					0.03664866063570571
SVQRIKAR	8	Unmodified	_SVQRIKAR_					0	0	0		nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;ATP2A1|p.K572Efs*9|1|0.32|ENSG00000196296|chr16:28898392-28898393|-/C|frameshift_variant;ATP2A1|p.P571Rfs*21|2|0.37|ENSG00000196296|chr16:28898393-28898393|C/-|frameshift_variant	nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000196296|O14983-3|ATP2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.30230712890625	2	479.30125	956.587947	3.4576	0.0016572	-0.45066	-0.000216	3.007	0.0014412	479.30097760057714	34.43	0.28811	34.43	34.318	34.606	0					32	12	3	0	0	0	0.7126	1	11585	11585		31.955	1.4512	1	308400			41088	7346	27420	27531	41624	41624					0.10791691011172588
SVQRNACSLQL	11	Unmodified	_SVQRNACSLQL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.88226318359375	3	406.880162	1217.61866	3.0809	0.0012536	2.1812	0.00088749	5.2621	0.002141	406.88135389997683	27.585	0.62653	27.585	27.17	27.797	0					43	12	5	0	0	0	0.44025	1	9831	9831		48.602	0	1	2430500	+		41089	15246	27421	27532	41625	41625					0.018550565432406074
SVQRPGLAR	9	Unmodified	_SVQRPGLAR_					0	0	0		ENST00000569862.5_1_16:67865068-67866179:-|nuORF;ENST00000562947.5_1_16:67864542-67866179:-|nuORF;nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF;ENSG00000102901|ENST00000562787|CENPT	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.29083251953125	2	492.290882	982.567212	0.79242	0.0003901	-0.96254	-0.00047385	-0.17012	-8.3748E-05	492.2903152281656	19.313	0.45441	19.313	19.083	19.537	0					22	10	3	0	0	0	0.30841	1	5798	5798		49.536	7.1399	1	1086500			41090	10787	27422	27533	41626	41626					0.07523100631499346
SVQRPGLAR	9	Unmodified	_SVQRPGLAR_					0	0	0		ENST00000569862.5_1_16:67865068-67866179:-|nuORF;ENST00000562947.5_1_16:67864542-67866179:-|nuORF;nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF;ENSG00000102901|ENST00000562787|CENPT	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2908020019531	2	492.290882	982.567212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.982	1	18.982	18.482	19.482	0								0	0	0	0.27939	1	5060	5060		39.253	1.4413	1				41091	10787	27422	27533	41627	41627					0.07523100631499346
SVQRPGLAR	9	Unmodified	_SVQRPGLAR_					0	0	0		ENST00000569862.5_1_16:67865068-67866179:-|nuORF;ENST00000562947.5_1_16:67864542-67866179:-|nuORF;nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF;ENSG00000102901|ENST00000562787|CENPT	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2908020019531	2	492.290882	982.567212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.11	1	19.11	18.61	19.61	0								0	0	0	0.04624	1	5125	5125		87.696	14.817	1				41092	10787	27422	27533	41628	41628					0.07523100631499346
SVQRPGLAR	9	Unmodified	_SVQRPGLAR_					0	0	0		ENST00000569862.5_1_16:67865068-67866179:-|nuORF;ENST00000562947.5_1_16:67864542-67866179:-|nuORF;nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF;ENSG00000102901|ENST00000562787|CENPT	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	ENST00000569862.5_1_16:67865068-67866179:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2908630371094	2	492.290882	982.567212	-0.58805	-0.00028949	0.28557	0.00014058	-0.30248	-0.00014891	492.2910712798837	19.204	0.31276	19.204	18.997	19.309	0					14	6	3	0	0	0	0.25761	1	5883	5883		54.722	1.7857	1	973650			41093	10787	27422	27533	41629	41629					0.07523100631499346
SVQRRLSE	8	Unmodified	_SVQRRLSE_					0	0	0			REV__ENSG00000159650|ENST00000290868|UROC1	REV__ENSG00000159650|ENST00000290868|UROC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.6518859863281	2	487.772522	973.530492	-0.70438	-0.00034358	-0.14007	-6.8321E-05	-0.84445	-0.0004119	487.7724875201805	11.981	0.46711	11.981	11.917	12.384	0					30	12	3	0	0	0	0.65148	1	2646	2646		40.778	0	1	27759000	+		41094	15723	27423	27534	41630	41630					0.04266804014935133
SVQSAVVSK	9	Unmodified	_SVQSAVVSK_					0	0	0		ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7589111328125	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.2	1	20.2	19.7	20.7	0								0	0	0	0.1568	1	6226	6226		58.246	8.2217	1				41095	5792	27424	27535	41631	41631					0.046934810348602696
SVQSDQGYISR	11	Unmodified	_SVQSDQGYISR_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	620.3020629882812	2	620.301841	1238.58913	0.17665	0.00010957	-0.27051	-0.0001678	-0.093863	-5.8223E-05	620.3018005764425	24.651	0.11606	24.651	24.568	24.684	0					8	3	3	0	0	0	0.032425	1	7298	7298		113.67	62.478	1	239930			41096	6679	27425	27536	41632	41632					-0.020621842012587877
SVQSDQGYISR	11	Unmodified	_SVQSDQGYISR_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	620.302001953125	2	620.301841	1238.58913	0.083209	5.1615E-05	0.2104	0.00013051	0.29361	0.00018213	620.3018903268284	24.9	0.16619	24.9	24.814	24.98	0					10	4	3	0	0	0	4.564E-05	1	8446	8446		163.46	83.009	1	1022300			41097	6679	27425	27536	41633	41633					-0.020621842012587877
SVQSDQGYISR	11	Unmodified	_SVQSDQGYISR_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	620.3016357421875	2	620.301841	1238.58913	0.66741	0.00041399	-1.2739	-0.00079022	-0.60652	-0.00037623	620.8022329050705	24.659	0.1611	24.659	24.573	24.734	0					7	5	2	0	0	0	0.067676	1	7574	7574		97.597	41.163	1	50787			41098	6679	27425	27536	41634	41634					-0.020621842012587877
SVQSDQGYISR	11	Unmodified	_SVQSDQGYISR_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3019409179688	2	620.301841	1238.58913	0.18018	0.00011177	-0.051149	-3.1728E-05	0.12903	8.0038E-05	620.3018126230455	24.882	0.16223	24.882	24.778	24.94	0					5	3	2	0	0	0	0.11546	1	8772	8772		85.924	20.458	1	372370			41099	6679	27425	27536	41635	41635					-0.020621842012587877
SVQSGNLAL	9	Unmodified	_SVQSGNLAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.7431640625	2	444.742899	887.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.511	1	37.511	37.011	38.011	0								0	0	0	0.15687	1	12284	12284		58.23	7.0372	1				41100	1048	27426	27537	41636	41636					0.02300908000745494
SVQSGNLAL	9	Unmodified	_SVQSGNLAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7419128417969	2	444.742899	887.471246	0.59141	0.00026303	-1.2118	-0.00053893	-0.62037	-0.00027591	444.74236291346193	37.914	0.2658	37.914	37.79	38.056	0					18	11	2	0	0	0	0.1424	1	14371	14371		69.628	0	1	295140			41101	1048	27426	27537	41637	41637					0.02300908000745494
SVQSGNLAL	9	Unmodified	_SVQSGNLAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.74285888671875	2	444.742899	887.471246	-1.1605	-0.00051615	0.9618	0.00042776	-0.19875	-8.839E-05	444.74334630940945	37.645	0.22449	37.645	37.54	37.764	0					21	12	2	0	0	0	0.11898	1	12700	12700		75.043	14.925	1	156470			41102	1048	27426	27537	41638	41638					0.02300908000745494
SVQSGNLAL	9	Unmodified	_SVQSGNLAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.74261474609375	2	444.742899	887.471246	0.55183	0.00024542	-0.93422	-0.00041549	-0.38239	-0.00017006	444.7424248188446	37.85	0.27162	37.85	37.747	38.018	0					22	9	3	0	0	0	0.0097668	1	14816	14816		141.52	28.109	1	544140			41103	1048	27426	27537	41639	41639					0.02300908000745494
SVQSGNLAL	9	Unmodified	_SVQSGNLAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.7423095703125	2	444.742899	887.471246	-2.7966	-0.0012438	2.2615	0.0010058	-0.53513	-0.00023799	444.7439256160298	37.61	0.21645	37.61	37.541	37.758	0					14	10	2	0	0	0	0.032052	1	13450	13450		107.01	11.192	1	65248			41104	1048	27426	27537	41640	41640					0.02300908000745494
SVQSGNLAL	9	Unmodified	_SVQSGNLAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7428894042969	2	444.742899	887.471246	-0.47199	-0.00020991	0.11394	5.0675E-05	-0.35805	-0.00015924	444.74294984953417	37.761	0.25293	37.761	37.708	37.961	0					9	5	2	0	0	0	0.032383	1	14802	14802		106.68	26.97	1	198340			41105	1048	27426	27537	41641	41641					0.02300908000745494
SVQSVDVLSL	10	Unmodified	_SVQSVDVLSL_					0	0	0			REV__ENSG00000176422|ENST00000338146|SPRYD4	REV__ENSG00000176422|ENST00000338146|SPRYD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.5295715332031	3	349.529123	1045.56554	0.49775	0.00017398	0.6477	0.00022639	1.1455	0.00040037	349.5293567674263	17.835	0.2291	17.835	17.762	17.992	0					17	5	4	0	0	0	0.52707	1	5098	5098		46.457	6.3986	1	1726600	+		41106	16653	27427	27538	41642	41642					0.04458002032242803
SVQTKAVNK	9	Unmodified	_SVQTKAVNK_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.H353Pfs*16|1|0.31|ENSG00000119285|chr1:236595572-236595573|-/G|frameshift_variant;HEATR1|p.M758Dfs*47|1|0.08|ENSG00000119285|chr1:236583167-236583168|-/G|frameshift_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.78460693359375	2	487.785099	973.555644	-0.0090255	-4.4025E-06	-1.4455	-0.00070512	-1.4546	-0.00070952	487.7844298397075	13.543	0.043282	13.543	13.508	13.552	0					4	2	2	0	0	0	0.19952	1	2669	2669		61.691	8.7546	1	56943			41107	3105	27428	27539	41643	41643					0.0678085881751258
SVQTKAVNK	9	Unmodified	_SVQTKAVNK_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.H353Pfs*16|1|0.31|ENSG00000119285|chr1:236595572-236595573|-/G|frameshift_variant;HEATR1|p.M758Dfs*47|1|0.08|ENSG00000119285|chr1:236583167-236583168|-/G|frameshift_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7847900390625	2	487.785099	973.555644	-0.35807	-0.00017466	-0.013672	-6.6692E-06	-0.37174	-0.00018133	487.78505922895545	13.817	0.16472	13.817	13.733	13.897	0					7	4	2	0	0	0	0.013878	1	3234	3234		132.76	55.44	1	780680			41108	3105	27428	27539	41644	41644					0.0678085881751258
SVQTKTIKK	9	Unmodified	_SVQTKTIKK_					0	0	0		ENST00000513957.1_1_15:56216842-56258681:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.824462890625	2	516.824224	1031.63389	0.31885	0.00016479	0.32133	0.00016607	0.64019	0.00033087	516.8243730909447	13.557	0.048477	13.557	13.527	13.576	0					4	2	2	0	0	0	0.02953	1	2673	2673		109.48	51.667	1	150680			41109	1437	27429	27540	41645	41645					0.1193429140275839
SVQTKTIKK	9	Unmodified	_SVQTKTIKK_					0	0	0		ENST00000513957.1_1_15:56216842-56258681:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.88507080078125	3	344.885241	1031.63389	0.68354	0.00023574	-0.93235	-0.00032155	-0.24881	-8.5812E-05	344.88484601988	13.823	0.088009	13.823	13.782	13.87	0					4	2	2	0	0	0	0.36892	1	3244	3244		59.931	32.049	1	204390			41110	1437	27429	27540	41646	41646					0.1193429140275839
SVQTKTIKK	9	Unmodified	_SVQTKTIKK_					0	0	0		ENST00000513957.1_1_15:56216842-56258681:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.823486328125	2	516.824224	1031.63389	0.11472	5.929E-05	0.59853	0.00030933	0.71325	0.00036862	516.8239706366138	13.588	0.040877	13.588	13.561	13.602	0					4	2	2	0	0	0	0.16806	1	2818	2818		65.465	26.213	1	90227			41111	1437	27429	27540	41647	41647					0.1193429140275839
SVQTKTIKK	9	Unmodified	_SVQTKTIKK_					0	0	0		ENST00000513957.1_1_15:56216842-56258681:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.8852233886719	3	344.885241	1031.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.854	1	13.854	13.354	14.354	0								0	0	0	0.15687	1	3467	3467		83.647	34.205	1				41112	1437	27429	27540	41648	41648					0.1193429140275839
SVQTKTIKK	9	Unmodified	_SVQTKTIKK_					0	0	0		ENST00000513957.1_1_15:56216842-56258681:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	ENST00000513957.1_1_15:56216842-56258681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.823974609375	2	516.824224	1031.63389	-0.50923	-0.00026318	0.23111	0.00011945	-0.27811	-0.00014373	516.8243080957583	13.817	0.10839	13.817	13.765	13.873	0					4	2	2	0	0	0	0.017421	1	3463	3463		126.24	56.615	1	256200			41113	1437	27429	27540	41649	41649					0.1193429140275839
SVQTQPAIKK	10	Unmodified	_SVQTQPAIKK_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1;BARD1|p.K208Rfs*4|3|0.24|ENSG00000138376|chr2:214781251-214781251|T/-|frameshift_variant;BARD1|p.D172Mfs*40|2|0.14|ENSG00000138376|chr2:214781361-214781361|T/-|frameshift_variant;BARD1|p.N306Ifs*11|1|0.11|ENSG00000138376|chr2:214780957-214780957|T/-|frameshift_variant	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3275756835938	2	550.327131	1098.63971	0.18997	0.00010455	0.87345	0.00048069	1.0634	0.00058523	550.3275424675036	17.342	0.20135	17.342	17.234	17.435	0					10	4	3	0	0	0	0.31613	1	5161	5161		65.465	10.743	1	369950			41114	4249	27430	27541	41650	41650					0.09433389914420331
SVQVFGRKK	9	Unmodified	_SVQVFGRKK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;ENST00000469078.5_1_19:20235852-20236290:+|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.2134704589844	3	350.213581	1047.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.374	1	18.374	17.874	18.874	0								0	0	0	0.25587	1	5363	5363		42.864	0.46813	1				41115	2334	27431	27542	41651	41651					0.09700844325402613
SVQVMALKK	9	Unmodified	_SVQVMALKK_					0	0	0		TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant	TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.20361328125	3	335.203805	1002.58959	0.38193	0.00012802	-0.63403	-0.00021253	-0.2521	-8.4503E-05	335.20355616445937	24.27	0.16319	24.27	24.163	24.326	0					5	3	2	0	0	0	0.61124	1	8488	8488		33.922	19.057	1	245920			41116	1348	27432	27543	41652	41652					0.08839563984918186
SVQVSVAPAG	10	Unmodified	_SVQVSVAPAG_					0	0	0		KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant;KIF26A|p.R1269Gfs*7|1|0.38|ENSG00000066735|chr14:104176588-104176588|C/-|frameshift_variant;ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.V265Wfs*43|1|0.37|ENSG00000066735|chr14:104157805-104157805|C/-|frameshift_variant	KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant	KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.75042724609375	2	457.750724	913.486896	-1.1239	-0.00051448	0.75866	0.00034728	-0.36528	-0.00016721	457.75109338902763	14.243	0.40657	14.243	13.985	14.391	0					28	18	2	0	0	0	0.52275	1	3020	3020		42.864	5.0528	1	292950			41117	1396	27433	27544	41653	41653					0.026691945178072274
SVQYRRNS	8	Unmodified	_SVQYRRNS_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3|VWA5B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2643127441406	2	505.262322	1008.51009	0.70487	0.00035614	2.5262	0.0012764	3.231	0.0016325	505.2637052762627	24.501	0.32614	24.501	24.367	24.693	0					14	9	2	0	0	0	0.72381	1	7227	7227		30.504	2.6214	1	79820	+		41118	21085	27434	27545	41654	41654					0.006176333551479729
SVQYTPVYK	9	Unmodified	_SVQYTPVYK_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7866821289062	2	542.787307	1083.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.664	1	28.664	28.164	29.164	0								0	0	0	0.10491	1	10529	10529		72.243	29.379	1				41119	7780	27435	27546	41655	41655					0.02162323240418118
SVRACRYLD	9	Unmodified	_SVRACRYLD_					0	0	0			REV__ENST00000382985.8_1_14:21464725-21465046:+|nuORF	REV__ENST00000382985.8_1_14:21464725-21465046:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.773193359375	2	541.774208	1081.53386	0.30262	0.00016395	-2.4074	-0.0013042	-2.1047	-0.0011403	542.2752732334609	13.979	0.32854	13.979	13.733	14.061	0					16	8	3	0	0	0	0.47038	1	3274	3274		35.618	5.1146	1	405110	+		41120	16069	27436	27547	41656	41656					-0.0036426920271424024
SVRALVDLQ	9	Unmodified	_SVRALVDLQ_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4;ARID5A-CNNM4|1|fusion	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7928161621094	2	500.792924	999.571294	0.019393	9.7118E-06	-0.28504	-0.00014275	-0.26565	-0.00013304	500.7927745549492	30.573	0.24412	30.573	30.464	30.708	0					8	5	2	0	0	0	0.3269	1	11497	11497		47.96	5.5634	1	136770			41121	5247	27437	27548	41657	41657					0.07149145334562945
SVRAPPNRT	9	Unmodified	_SVRAPPNRT_					0	0	0		nc|ENSG00000168675|O15165-8|LDLRAD4;nc|ENSG00000168675|O15165-5|LDLRAD4;nc|ENSG00000168675|O15165-4|LDLRAD4;ENST00000435606.1_1_18:13621108-13645653:+|nuORF;nc|ENSG00000124225|Q969W9-3|PMEPA1;nc|ENSG00000168675|O15165-3|LDLRAD4;nc|ENSG00000168675|O15165-7|LDLRAD4;nc|ENSG00000124225|Q969W9-2|PMEPA1;nc|ENSG00000168675|O15165-6|LDLRAD4;ENSG00000124225|ENST00000341744|PMEPA1;nc|ENSG00000168675|O15165-2|LDLRAD4;ENSG00000168675|ENST00000359446|LDLRAD4	nc|ENSG00000168675|O15165-8|LDLRAD4	nc|ENSG00000168675|O15165-8|LDLRAD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2817687988281	2	499.280515	996.546476	0.166	8.2879E-05	2.9238	0.0014598	3.0898	0.0015427	499.2817643962991	29.173	0.15787	29.173	29.112	29.27	0					7	4	2	0	0	0	0.27123	1	9789	9789		64.207	27.048	1	104370			41122	3358	27438	27549	41658	41658					0.048065102518421554
SVRCIVQL	8	Unmodified	_SVRCIVQL_					0	0	0			REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF	REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2642517089844	2	459.265487	916.516422	-0.15549	-7.141E-05	-4.0522	-0.0018611	-4.2077	-0.0019325	459.2635673135749	25.657	0.35839	25.657	25.459	25.817	0					21	6	5	0	0	0	0.63077	1	9123	9123		44.117	5.3107	1	327060	+		41123	19208	27439	27550	41659	41659					0.05482435262297258
SVRECQRI	8	Unmodified	_SVRECQRI_					0	0	0			REV__ENST00000486220.5_1_1:174926618-174927046:+|nuORF	REV__ENST00000486220.5_1_1:174926618-174927046:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.763916015625	2	495.761101	989.507648	0.73408	0.00036393	4.3992	0.002181	5.1333	0.0025449	495.7632725965239	16.154	0.18344	16.154	16.064	16.247	0					9	4	3	0	0	0	0.42778	1	4331	4331		67.494	1.0644	1	676480	+		41124	18818	27440	27551	41660	41660					0.012474616258373317
SVRKRGKQ	8	Unmodified	_SVRKRGKQ_					0	0	0			REV__ENST00000608113.1_1_2:55845077-55845233:+|nuORF	REV__ENST00000608113.1_1_2:55845077-55845233:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7998962402344	2	479.798875	957.583196	2.3021	0.0011046	-0.10469	-5.0231E-05	2.1974	0.0010543	479.7987736226708	35.356	0.52477	35.356	35.196	35.721	0					24	10	4	0	0	0	0.24915	1	13629	13629		102.77	11.997	1	7962400	+		41125	20629	27441	27552	41661	41661					0.10270806868413729
SVRKSRKQ	8	Unmodified	_SVRKSRKQ_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.A1202V|1|0.28|ENSG00000150995|chr3:4685109-4685109|C/T|missense_variant	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.8052062988281	2	494.804157	987.593761	2.8189	0.0013948	-0.47597	-0.00023551	2.343	0.0011593	494.8038584146492	23.709	0.1632	23.709	23.65	23.813	0					10	3	4	0	0	0	0.59773	1	8088	8088		38.806	38.806	1	1390300			41126	4941	27442	27553	41662	41662					0.09946789522848576
SVRLEQAPC	9	Unmodified	_SVRLEQAPC_					0	0	0			REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.7554626464844	2	501.755484	1001.49641	0.47123	0.00023644	0.84502	0.00042399	1.3162	0.00066043	501.75643007783594	17.289	0.10515	17.289	17.203	17.308	0					7	3	3	0	0	0	0.33044	1	4096	4096		47.657	5.2612	1	142340	+		41127	18273	27443	27554	41663	41663					-0.004273604683248777
SVRLNYGI	8	Unmodified	_SVRLNYGI_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2611999511719	2	461.261259	920.507966	0.098437	4.5405E-05	-0.62539	-0.00028847	-0.52695	-0.00024306	461.261009588811	31.318	0.20531	31.318	31.227	31.432	0					14	8	2	0	0	0	0.67394	1	10046	10046		37.159	1.5408	1	185160			41128	6450	27444	27555	41664	41664					0.04453204617323081
SVRMNNTLR	9	Unmodified	_SVRMNNTLR_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.1976623535156	3	364.197713	1089.57131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.735	1	13.735	13.235	14.235	0								0	0	0	0.3245	1	3193	3193		30.318	4.7437	1				41129	951	27445	27556	41665	41665					0.030108220629017524
SVRNGWQY	8	Unmodified	_SVRNGWQY_					0	0	0			REV__ENST00000495184.5_1_9:286487-368312:+|nuORF	REV__ENST00000495184.5_1_9:286487-368312:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2454833984375	2	505.246141	1008.47773	-0.3217	-0.00016254	-1.376	-0.00069524	-1.6977	-0.00085778	505.2455378580348	31.61	0.46388	31.61	31.471	31.935	0					13	9	2	0	0	0	0.60719	1	11883	11883		47.916	5.0513	1	120080	+		41130	19760	27446	27557	41666	41666					-0.02617154047868553
SVRPPGASM	9	Unmodified	_SVRPPGASM_					0	0	0		ENST00000590096.1_1_19:10654706-10657792:+|nuORF	ENST00000590096.1_1_19:10654706-10657792:+|nuORF	ENST00000590096.1_1_19:10654706-10657792:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2259826660156	2	451.231645	900.448736	0.21151	9.5438E-05	-1.944	-0.0008772	-1.7325	-0.00078176	451.23061494854466	19.592	0.68109	19.592	19.414	20.095	0					21	15	2	0	0	0	0.35045	1	6162	6162		45.952	1.4209	1	178360			41131	10945	27447	27558	41667	41667					-0.005470146685070176
SVRPPRPKK	9	Unmodified	_SVRPPRPKK_					0	0	0		PRKRIP1|p.K25Rfs*15|1|0.31|ENSG00000128563|chr7:102396480-102396480|C/-|frameshift_variant;ENSG00000128563|ENST00000397912|PRKRIP1	PRKRIP1|p.K25Rfs*15|1|0.31|ENSG00000128563|chr7:102396480-102396480|C/-|frameshift_variant	PRKRIP1|p.K25Rfs*15|1|0.31|ENSG00000128563|chr7:102396480-102396480|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8397216796875	2	532.838	1063.66145	3.4012	0.0018123	-0.021284	-1.1341E-05	3.38	0.001801	532.8379611557276	34.368	0.65184	34.368	34.261	34.913	0					33	13	4	0	0	0	0.22823	1	13177	13177		60.118	14.146	1	3330500			41132	3546	27448	27559	41668	41668					0.1321623945364081
SVRPTFWK	8	Unmodified	_SVRPTFWK_					0	0	0			REV__KLHDC3|p.C134Lfs*3|1|0.28|ENSG00000124702|chr6:43017922-43017922|G/-|frameshift_variant	REV__KLHDC3|p.C134Lfs*3|1|0.28|ENSG00000124702|chr6:43017922-43017922|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.8614196777344	3	340.859027	1019.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.82	1	13.82	13.32	14.32	0								0	0	0	1.7419	1	3299	3299		49.442	11.933	1		+		41133	14414	27449	27560	41669	41669					0.04625483888321469
SVRTLSIGI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVRTLSIGI_					1	0	0			REV__PNPLA3|p.G112S|1|0.74|ENSG00000100344|chr22:43927081-43927081|G/A|missense_variant	REV__PNPLA3|p.G112S|1|0.74|ENSG00000100344|chr22:43927081-43927081|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2956237792969	2	494.295299	986.576045	-0.45573	-0.00022527	-1.1378	-0.0005624	-1.5935	-0.00078767	494.29510128334834	41.84	0.17686	41.84	41.73	41.907	0					14	8	2	0	0	0	0.38666	1	15860	15860		42.864	8.6917	1	64987	+		41134	13543	27450	27561	41670	41670					0.08222029477326487
SVSAIATKR	9	Unmodified	_SVSAIATKR_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7795715332031	2	466.779816	931.545079	-0.66296	-0.00030945	0.091895	4.2895E-05	-0.57106	-0.00026656	466.7798745115981	19.439	0.18326	19.439	19.339	19.522	0					6	4	2	0	0	0	0.39215	1	5874	5874		42.396	4.5846	1	607790	+		41135	14725	27451	27562	41671	41671					0.07656876163093784
SVSAPSKKVAK	11	Unmodified	_SVSAPSKKVAK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.3346557617188	2	551.334956	1100.65536	0.13956	7.6946E-05	-0.0048966	-2.6997E-06	0.13467	7.4247E-05	551.3345995542359	14.722	0.16722	14.722	14.613	14.78	0					7	3	3	0	0	0	0.16041	1	3872	3872		70.399	33.952	1	327820			41136	5378	27452	27563	41672	41672					0.1090567643148006
SVSAPVGPEK	10	Unmodified	_SVSAPVGPEK_					0	0	0			REV__MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant	REV__MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.333984375	2	485.763832	969.513111	2.4971	0.001213	-2.3625	-0.0011476	0.1346	6.5382E-05	485.76219590302577	16.174	0.16869	16.174	16.114	16.283	0					5	3	2	0	0	0	0.536	1	4459	4459		41.427	10.923	1	66474	+		41137	13771	27453	27564	41673	41673					0.02713463689292439
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.76849365234375	2	457.768917	913.523281	-1.0078	-0.00046135	0.45032	0.00020614	-0.55751	-0.00025521	457.7692855710265	28.11	0.47529	28.11	27.877	28.353	0					27	17	2	0	0	0	0.24095	1	9009	9009		56.721	1.9447	1	166810			41138	3009	27454	27565	41674	41674					0.06306071414519465
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.76873779296875	2	457.768917	913.523281	0.72187	0.00033045	-0.22582	-0.00010337	0.49605	0.00022708	457.76858770040553	28.373	0.48618	28.373	27.996	28.482	0					24	10	3	0	0	0	0.020674	1	10376	10376		120.87	35.953	1	932830			41139	3009	27454	27565	41675	41675					0.06306071414519465
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7685852050781	2	457.768917	913.523281	0.18529	8.482E-05	1.3438	0.00061513	1.529	0.00069995	457.7694020888161	28.151	0.34409	28.151	27.952	28.296	0					14	8	2	0	0	0	0.42902	1	9294	9294		39.253	2.0937	1	224770			41140	3009	27454	27565	41676	41676					0.06306071414519465
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7688293457031	2	457.768917	913.523281	0.8794	0.00040256	0.9209	0.00042156	1.8003	0.00082412	457.76907367888026	28.333	0.61479	28.333	27.943	28.558	0					22	12	3	0	0	0	0.078509	1	10226	10226		85.161	10.906	1	709340			41141	3009	27454	27565	41677	41677					0.06306071414519465
SVSDFNYSR	9	Unmodified	_SVSDFNYSR_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7465209960938	2	537.74617	1073.47779	2.076	0.0011164	-1.3577	-0.0007301	0.71833	0.00038628	537.7454315228275	28.894	0.13314	28.894	28.807	28.94	0					12	3	4	0	0	0	0.070005	1	10252	10252		88.177	36.841	1	703200			41142	2764	27455	27566	41678	41678					-0.05601198838508026
SVSDFNYSR	9	Unmodified	_SVSDFNYSR_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7469482421875	2	537.74617	1073.47779	-0.32561	-0.0001751	0.37164	0.00019985	0.04603	2.4753E-05	537.7460716112689	28.672	0.12593	28.672	28.574	28.7	0					10	5	2	0	0	0	0.12834	1	9253	9253		72.879	17.375	1	135260			41143	2764	27455	27566	41679	41679					-0.05601198838508026
SVSDFNYSR	9	Unmodified	_SVSDFNYSR_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7462768554688	2	537.74617	1073.47779	1.8916	0.0010172	-1.8707	-0.001006	0.020868	1.1222E-05	537.7452727997792	28.919	0.16382	28.919	28.812	28.976	0					11	3	4	0	0	0	0.18416	1	10662	10662		63.534	8.0296	1	938120			41144	2764	27455	27566	41680	41680					-0.05601198838508026
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.8114624023438	2	515.810782	1029.60701	1.3185	0.00068008	-0.45771	-0.00023609	0.86075	0.00044398	515.810506997396	36.765	0.25499	36.765	36.672	36.927	0					36	13	4	0	0	0	0.11826	1	12030	12030		101.25	48.164	1	643860			41145	973	27456	27567	41681	41681					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.811279296875	2	515.810782	1029.60701	1.223	0.00063084	-0.72566	-0.0003743	0.49735	0.00025654	515.8103524309881	37.036	0.40013	37.036	36.902	37.302	0					34	11	4	0	0	0	0.011683	1	13993	13993		150.36	49.109	1	3925900			41146	973	27456	27567	41682	41682					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.8108520507812	2	515.810782	1029.60701	-0.074626	-3.8493E-05	1.3388	0.00069055	1.2641	0.00065206	515.8114594884917	36.803	0.28023	36.803	36.71	36.99	0					31	15	3	0	0	0	0.23114	1	12446	12446		72.879	34.126	1	375510			41147	973	27456	27567	41683	41683					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.8111572265625	2	515.810782	1029.60701	0.83646	0.00043145	-0.42989	-0.00022174	0.40657	0.00020971	515.810511037703	37.035	0.31116	37.035	36.902	37.213	0					28	9	4	0	0	0	0.01554	1	14430	14430		141.52	51.151	1	1609400			41148	973	27456	27567	41684	41684					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.810791015625	2	515.810782	1029.60701	1.4388	0.00074214	-1.0669	-0.00055034	0.37184	0.0001918	515.8102007595912	37.031	0.3064	37.031	36.894	37.2	0					29	9	4	0	0	0	0.03057	1	14435	14435		129.42	71.191	1	2012800			41149	973	27456	27567	41685	41685					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8114624023438	2	515.810782	1029.60701	1.1215	0.00057848	-0.067357	-3.4743E-05	1.0541	0.00054374	515.8107901603039	36.773	0.22598	36.773	36.688	36.914	0					25	10	3	0	0	0	0.0088982	1	13159	13159		163.15	97.686	1	436550			41150	973	27456	27567	41686	41686					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8109130859375	2	515.810782	1029.60701	0.75325	0.00038854	0.57505	0.00029662	1.3283	0.00068515	515.8110834918114	36.774	0.25419	36.774	36.702	36.957	0					27	11	3	0	0	0	0.31784	1	13153	13153		80.455	33.998	1	606480			41151	973	27456	27567	41687	41687					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.8106079101562	2	515.810782	1029.60701	-1.5369	-0.00079274	1.786	0.00092123	0.2491	0.00012849	515.8114395640577	36.782	0.10759	36.782	36.741	36.848	0					7	5	2	0	0	0	0.61002	1	13168	13168		42.864	21.917	1	84530			41152	973	27456	27567	41688	41688					0.09339182791586609
SVSDIIVVAK	10	Unmodified	_SVSDIIVVAK_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.81103515625	2	515.810782	1029.60701	0.17212	8.8784E-05	0.18905	9.7512E-05	0.36117	0.0001863	515.8108081952075	36.94	0.45632	36.94	36.829	37.285	0					23	9	3	0	0	0	0.011683	1	14384	14384		150.36	59.992	1	4548400			41153	973	27456	27567	41689	41689					0.09339182791586609
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2561950683594	2	471.256174	940.497795	-0.010924	-5.1478E-06	-0.66198	-0.00031196	-0.6729	-0.00031711	471.25574466180484	26.689	0.65754	26.689	26.448	27.106	0					45	22	3	0	0	0	0.13267	2	8071	8071;8082		71.877	27.231	1	317580			41154	5884	27457	27568	41690;41691	41690					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2560119628906	2	471.256174	940.497795	0.18083	8.5216E-05	-0.71154	-0.00033532	-0.53071	-0.0002501	471.25574260680224	26.928	0.93673	26.928	26.535	27.472	0					69	22	5	0	0	0	0.037569	2	9286	9286;9452		101.6	42.819	1	2737800			41155	5884	27457	27568	41692;41693	41692					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2555236816406	2	471.256174	940.497795	-0.12416	-5.8511E-05	-0.90045	-0.00042434	-1.0246	-0.00048285	471.25576411139264	26.936	0.96211	26.936	26.577	27.539	0					49	19	4	0	0	0	0.087861	2	9619	9619;9803		82.241	32.055	1	1104800			41156	5884	27457	27568	41694;41695	41694					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2558898925781	2	471.256174	940.497795	-0.18768	-8.8447E-05	-0.70914	-0.00033418	-0.89682	-0.00042263	471.2561370202608	26.732	0.60133	26.732	26.478	27.079	0					28	14	3	0	0	0	0.25716	1	8605	8605		54.776	15.523	1	198940			41157	5884	27457	27568	41696	41696					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2558288574219	2	471.256174	940.497795	-0.57887	-0.00027279	0.51789	0.00024406	-0.060978	-2.8736E-05	471.2560724365362	26.736	0.55523	26.736	26.509	27.064	0					28	13	3	0	0	0	0.16002	1	8601	8601		66.429	20.477	1	239440			41158	5884	27457	27568	41697	41697					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2557373046875	2	471.256174	940.497795	-0.55407	-0.00026111	-0.68453	-0.00032259	-1.2386	-0.0005837	471.25605400035323	26.895	1.3298	26.895	26.298	27.628	0					68	26	4	0	0	0	0.025517	2	9481	9481;9650		113.41	46.982	1	1988300			41159	5884	27457	27568	41698;41699	41698					0.025165968920987325
SVSDLAPPRK	10	Unmodified	_SVSDLAPPRK_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.2048034667969	3	357.204862	1068.59276	0.48677	0.00017388	-0.4442	-0.00015867	0.04257	1.5206E-05	357.20469012289857	21.818	0.56836	21.818	21.726	22.295	0					26	13	3	0	0	0	0.54197	1	7000	7000		61.691	39.13	1	613500			41160	5884	27458	27569	41700	41700					0.061205303632732466
SVSDLFNTK	9	Unmodified	_SVSDLFNTK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7611083984375	2	505.761289	1009.50803	0.82086	0.00041516	-0.73879	-0.00037365	0.082067	4.1506E-05	505.7609427869112	37.566	0.68004	37.566	37.423	38.103	0					70	24	4	0	0	0	0.0076184	1	14227	14227		146.79	53.59	1	17766000			41161	1272	27459	27570	41701	41701					0.0036515982667424396
SVSDLFNTK	9	Unmodified	_SVSDLFNTK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7618408203125	2	505.761289	1009.50803	1.0721	0.00054224	-0.98487	-0.00049811	0.087244	4.4125E-05	505.7608868780614	37.495	0.72148	37.495	37.36	38.081	0					72	23	5	0	0	0	0.0063888	2	14659	14659;14820		152.06	66.9	1	27067000			41162	1272	27459	27570	41702;41703	41702					0.0036515982667424396
SVSDLFNTK	9	Unmodified	_SVSDLFNTK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7621765136719	2	505.761289	1009.50803	0.10565	5.3436E-05	-0.073941	-3.7396E-05	0.031714	1.604E-05	505.76123732468403	37.287	0.46622	37.287	37.173	37.639	0					72	23	5	0	0	0	0.47473	1	13329	13329		35.152	4.8343	1	4765800			41163	1272	27459	27570	41704	41704					0.0036515982667424396
SVSDLFNTK	9	Unmodified	_SVSDLFNTK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7611999511719	2	505.761289	1009.50803	1.2458	0.00063006	-0.57336	-0.00028999	0.67239	0.00034007	505.76084503259904	37.456	1.0304	37.456	37.008	38.039	0					89	21	6	0	0	0	0.015992	1	14632	14632		128.6	43.441	1	26712000			41164	1272	27459	27570	41705	41705					0.0036515982667424396
SVSDPGQAR	9	Unmodified	_SVSDPGQAR_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7276611328125	2	458.727781	915.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.024	1	16.024	15.524	16.524	0								0	0	0	0.2591	1	3581	3581		42.396	3.59	1				41165	11605	27460	27571	41706	41706					-0.020094506644227295
SVSDPGQAR	9	Unmodified	_SVSDPGQAR_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7278137207031	2	458.727781	915.441008	0.17618	8.0818E-05	-0.44048	-0.00020206	-0.2643	-0.00012124	458.727531287391	16.294	0.2288	16.294	16.163	16.392	0					10	5	2	0	0	0	0.098791	1	4376	4376		79.713	24.208	1	284620			41166	11605	27460	27571	41707	41707					-0.020094506644227295
SVSDPGQAR	9	Unmodified	_SVSDPGQAR_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.72747802734375	2	458.727781	915.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.268	1	16.268	15.768	16.768	0								0	0	0	0.15687	1	4373	4373		58.23	18.977	1				41167	11605	27460	27571	41708	41708					-0.020094506644227295
SVSDPGQAR	9	Unmodified	_SVSDPGQAR_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7273254394531	2	458.727781	915.441008	-0.15749	-7.2244E-05	-0.52809	-0.00024225	-0.68558	-0.00031449	458.7275549331797	16.238	0.31598	16.238	16.08	16.396	0					16	6	4	0	0	0	0.11898	1	4587	4587		75.043	25.602	1	773310			41168	11605	27460	27571	41709	41709					-0.020094506644227295
SVSDPGQAR	9	Unmodified	_SVSDPGQAR_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.727783203125	2	458.727781	915.441008	-0.043319	-1.9872E-05	-0.57383	-0.00026323	-0.61715	-0.00028311	458.72758514388545	16.048	0.1929	16.048	15.951	16.144	0					9	6	2	0	0	0	0.1424	1	3711	3711		69.628	20.186	1	89975			41169	11605	27460	27571	41710	41710					-0.020094506644227295
SVSDPGQAR	9	Unmodified	_SVSDPGQAR_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7274475097656	2	458.727781	915.441008	-0.44234	-0.00020291	-0.11561	-5.3034E-05	-0.55795	-0.00025595	458.7277530565974	16.258	0.46979	16.258	15.997	16.466	0					20	9	4	0	0	0	0.12834	1	4429	4429		72.879	19.528	1	699730			41170	11605	27460	27571	41711	41711					-0.020094506644227295
SVSDPVEDK	9	Unmodified	_SVSDPVEDK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2356872558594	2	488.235104	974.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.982	1	21.982	21.482	22.482	0								0	0	0	0.31838	1	6144	6144		31.53	0	1				41171	1179	27461	27572	41712	41712					-0.032594233069403344
SVSDRSSLNK	10	Unmodified	_SVSDRSSLNK_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7866821289062	2	546.785827	1091.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.802	1	15.802	15.302	16.302	0								0	0	0	0.17777	1	3673	3673		63.534	15.618	1				41172	1533	27462	27573	41713	41713					0.014984481156261609
SVSEAAKPKK	10	Unmodified	_SVSEAAKPKK_					0	0	0			REV__ENST00000477485.1_1_20:55088448-55092101:+|nuORF	REV__ENST00000477485.1_1_20:55088448-55092101:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.8069458007812	2	522.806031	1043.59751	1.6652	0.00087059	-1.0362	-0.00054175	0.62899	0.00032884	522.8055952030066	16.278	0.18471	16.278	16.149	16.334	0					10	4	3	0	0	0	0.12896	1	4372	4372		90.37	2.6155	1	765400	+		41173	12940	27463	27574	41714	41714					0.07745414506052839
SVSEPLAHI	9	Unmodified	_SVSEPLAHI_					0	0	0			REV__nc|ENSG00000059758|Q00537-2|CDK17	REV__nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7584228515625	2	476.758549	951.502546	0.63501	0.00030275	-0.96015	-0.00045776	-0.32514	-0.00015501	476.7580505793655	41.521	0.11518	41.521	41.454	41.569	0					7	4	2	0	0	0	0.25109	1	16337	16337		55.504	0	1	61144	+		41174	13077	27464	27575	41715	41715					0.024854810348415413
SVSEVMKESK	10	Unmodified	_SVSEVMKESK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.2874145507812	2	562.286814	1122.55907	1.2715	0.00071496	-0.84805	-0.00047685	0.42346	0.00023811	562.2862775161213	20.131	0.15643	20.131	20.058	20.214	0					7	5	2	0	0	0	0.00059424	1	5328	5328		186.41	98.714	1	422010			41175	3774	27465	27576	41716	41716					0.002697408091989928
SVSEVMKESK	10	Unmodified	_SVSEVMKESK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2871704101562	2	562.286814	1122.55907	0.4545	0.00025556	0.5561	0.00031269	1.0106	0.00056824	562.2868494063794	20.472	0.23749	20.472	20.373	20.61	0					20	5	6	0	0	0	8.2425E-16	1	6366	6366		232.83	117.34	1	2286200			41176	3774	27465	27576	41717	41717					0.002697408091989928
SVSEVMKESK	10	Unmodified	_SVSEVMKESK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	375.1936340332031	3	375.193635	1122.55907	0.30101	0.00011294	-0.74712	-0.00028031	-0.44611	-0.00016738	375.193539791383	20.472	0.33308	20.472	20.322	20.655	0					17	7	4	0	0	0	0.536	1	6368	6368		53.597	14.883	1	1263500			41177	3774	27465	27576	41718	41718					0.002697408091989928
SVSEVMKESK	10	Unmodified	_SVSEVMKESK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.2877197265625	2	562.286814	1122.55907	-0.40224	-0.00022618	1.1301	0.00063542	0.72783	0.00040925	562.2876121022204	20.183	0.13572	20.183	20.107	20.243	0					10	4	3	0	0	0	0.0098546	1	5585	5585		143.37	68.33	1	372010			41178	3774	27465	27576	41719	41719					0.002697408091989928
SVSEVMKESK	10	Unmodified	_SVSEVMKESK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.2869873046875	2	562.286814	1122.55907	0.04635	2.6062E-05	-0.019269	-1.0835E-05	0.027081	1.5227E-05	562.286667764966	20.357	0.31546	20.357	20.297	20.612	0					13	6	4	0	0	0	2.2891000000000003E-31	1	6594	6594		262.84	109.8	1	1834100			41179	3774	27465	27576	41720	41720					0.002697408091989928
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.77490234375	2	494.774731	987.534909	-0.019208	-9.5034E-06	0.2881	0.00014254	0.26889	0.00013304	494.77493172633575	24.62	0.1854	24.62	24.508	24.693	0					12	5	3	0	0	0	0.0071053	1	7285	7285		148.99	44.24	1	389390			41180	1944	27466	27577	41721	41721					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7746276855469	2	494.774731	987.534909	0.75058	0.00037137	-0.81354	-0.00040252	-0.062961	-3.1151E-05	494.77439555098374	24.877	0.33374	24.877	24.741	25.074	0					20	8	3	0	0	0	0.0059092	1	8435	8435		154.12	55.489	1	2680000			41181	1944	27466	27577	41722	41722					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7747802734375	2	494.774731	987.534909	-1.2608	-0.00062382	-1.1402	-0.00056413	-2.401	-0.001188	494.77434167029764	24.621	0.35487	24.621	24.526	24.881	0					28	12	3	0	0	0	0.014688	1	7552	7552		131.03	26.285	1	571250			41182	1944	27466	27577	41723	41723					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.775146484375	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.687	1	24.687	24.187	25.187	0								0	0	0	0.001501	1	7737	7737		124.08	41.84	1				41183	1944	27466	27577	41724	41724					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7746276855469	2	494.774731	987.534909	0.067565	3.343E-05	-0.74064	-0.00036645	-0.67307	-0.00033302	494.77444473254394	24.693	0.18986	24.693	24.594	24.784	0					11	4	3	0	0	0	0.0071053	1	7730	7730		148.99	55.791	1	510620			41184	1944	27466	27577	41725	41725					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7744445800781	2	494.774731	987.534909	-2.4752	-0.0012247	1.4632	0.00072397	-1.0119	-0.00050069	494.77565541075154	24.685	0.14981	24.685	24.579	24.729	0					8	3	3	0	0	0	0.056004	1	7742	7742		93.143	27.34	1	335710			41185	1944	27466	27577	41726	41726					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7745056152344	2	494.774731	987.534909	-0.64499	-0.00031912	0.15733	7.7842E-05	-0.48766	-0.00024128	494.7747599927587	24.829	0.25629	24.829	24.723	24.979	0					8	5	2	0	0	0	0.0017279	1	8602	8602		176.09	71.34	1	1076000			41186	1944	27466	27577	41727	41727					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7745056152344	2	494.774731	987.534909	0.91306	0.00045176	-0.96967	-0.00047977	-0.056616	-2.8012E-05	494.7742987971061	24.813	0.20713	24.813	24.707	24.914	0					8	4	2	0	0	0	0.0017279	1	8618	8618		176.09	59.183	1	4295600			41187	1944	27466	27577	41728	41728					0.040642684378553895
SVSEVVVNR	9	Unmodified	_SVSEVVVNR_					0	0	0		ENST00000578759.1_1_17:60217316-60217976:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	ENST00000578759.1_1_17:60217316-60217976:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7739562988281	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.821	1	24.821	24.321	25.321	0								0	0	0	0.001501	1	8611	8611		124.08	41.84	1				41188	1944	27466	27577	41729	41729					0.040642684378553895
SVSFSATGKL	10	Unmodified	_SVSFSATGKL_					0	0	0		ENST00000553281.5_1_14:89088194-89171927:-|nuORF;EML5|p.G1621Efs*19|1|0.2|ENSG00000165521|chr14:88624982-88624982|C/-|frameshift_variant;EML5|p.N1682Mfs*7|1|0.04|ENSG00000165521|chr14:88621246-88621246|T/-|frameshift_variant;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7713317871094	2	498.771657	995.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.938	1	42.938	42.438	43.438	0								0	0	0	0.34574	1	17164	17164		31.53	0	1				41189	912	27467	27578	41730	41730					0.030817502063428037
SVSGMFLVA	9	Unmodified	_SVSGMFLVA_					0	0	0		TM7SF3|p.G358S|1|0.37|ENSG00000064115|chr12:26979901-26979901|C/T|missense_variant	TM7SF3|p.G358S|1|0.37|ENSG00000064115|chr12:26979901-26979901|C/T|missense_variant	TM7SF3|p.G358S|1|0.37|ENSG00000064115|chr12:26979901-26979901|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.7387390136719	2	455.738771	909.462989	-1.1009	-0.00050172	0.3543	0.00016147	-0.74659	-0.00034025	455.7388966529852	33.422	0.12671	33.422	33.361	33.487	0					8	5	2	0	0	0	0.45358	1	11216	11216		37.159	3.6435	1	50594			41190	22541	27468	27579	41731	41731					0.004636377597876162
SVSGPKRPQ	9	Unmodified	_SVSGPKRPQ_					0	0	0		IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant;ENSG00000136381|ENST00000258886|IREB2	IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant	IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.26885986328125	2	478.269616	954.524678	-0.059202	-2.8315E-05	-0.69086	-0.00033042	-0.75006	-0.00035873	478.269312042258	12.855	0.24124	12.855	12.642	12.884	0					17	13	2	0	0	0	0.30951	1	2462	2462		49.442	1.7842	1	109470			41191	4077	27469	27580	41732	41732					0.045597055032772005
SVSGYIYHK	9	Unmodified	_SVSGYIYHK_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2720336914062	2	527.271824	1052.5291	0.51641	0.00027229	-0.030972	-1.6331E-05	0.48544	0.00025596	527.2717699863503	24.277	0.26474	24.277	24.17	24.435	0					15	8	3	0	0	0	0.13267	1	7399	7399		71.877	17.101	1	365690			41192	950	27470	27581	41733	41733					0.004931699261760514
SVSGYIYHK	9	Unmodified	_SVSGYIYHK_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2721557617188	2	527.271824	1052.5291	0.28486	0.0001502	1.1085	0.00058446	1.3933	0.00073466	527.2718796862315	24.477	0.36785	24.477	24.326	24.694	0					25	7	6	0	0	0	0.019882	1	8584	8584		122.18	31.806	1	2513000			41193	950	27470	27581	41734	41734					0.004931699261760514
SVSHCRNLQ	9	Unmodified	_SVSHCRNLQ_					0	0	0		nc|ENSG00000161040|Q8NEE6-4|FBXL13;nc|ENSG00000161040|Q8NEE6-3|FBXL13;nc|ENSG00000161040|Q8NEE6-2|FBXL13;nc|ENSG00000161040|Q8NEE6|FBXL13;ENSG00000161040|ENST00000440067|FBXL13	nc|ENSG00000161040|Q8NEE6-4|FBXL13	nc|ENSG00000161040|Q8NEE6-4|FBXL13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2573852539062	2	522.256182	1042.49781	0.082576	4.3126E-05	2.3025	0.0012025	2.385	0.0012456	522.2572589783708	16.104	0.18675	16.104	16.007	16.194	0					7	4	2	0	0	0	0.19605	1	4301	4301		62.107	1.8135	1	1019600			41194	5402	27471	27582	41735	41735					-0.021737263795557737
SVSHFGKQAAL	11	Unmodified	_SVSHFGKQAAL_					0	0	0		PTPRZ1|p.R205H|1|0.16|ENSG00000106278|chr7:121976846-121976846|G/A|missense_variant	PTPRZ1|p.R205H|1|0.16|ENSG00000106278|chr7:121976846-121976846|G/A|missense_variant	PTPRZ1|p.R205H|1|0.16|ENSG00000106278|chr7:121976846-121976846|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.810791015625	2	572.809105	1143.60366	2.0218	0.0011581	1.014	0.00058084	3.0358	0.001739	572.809854880668	28.046	0.43453	28.046	27.947	28.381	0					31	9	5	0	0	0	0.14473	1	10240	10240		63.534	0	1	7307600			41195	11987	27472	27583	41736	41736					0.03759932737557392
SVSIALAYGG	10	Unmodified	_SVSIALAYGG_					0	0	0			REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF	REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2530822753906	2	469.2531	936.491647	-0.21546	-0.00010111	-0.066836	-3.1363E-05	-0.2823	-0.00013247	469.2531446820799	24.571	0.1462	24.571	24.48	24.626	0					6	3	2	0	0	0	0.4943	1	7692	7692		45.952	11.779	1	111520	+		41196	18121	27473	27584	41737	41737					0.0208607866057946
SVSIALAYGG	10	Unmodified	_SVSIALAYGG_					0	0	0			REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF	REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2527770996094	2	469.2531	936.491647	-0.66718	-0.00031308	-0.12012	-5.6365E-05	-0.7873	-0.00036944	469.2532294895683	24.554	0.2342	24.554	24.467	24.701	0					10	5	3	0	0	0	0.64178	1	7684	7684		29.15	3.6994	1	192880	+		41197	18121	27473	27584	41738	41738					0.0208607866057946
SVSIPSITK	9	Unmodified	_SVSIPSITK_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2768859863281	2	466.276575	930.538597	0.22879	0.00010668	-0.32442	-0.00015127	-0.095636	-4.4593E-05	466.27642341395057	33.67	0.86275	33.67	33.231	34.094	0					53	22	3	0	0	0	0.30841	1	12537	12537		49.536	5.1589	1	364730			41198	4580	27474	27585	41739	41739					0.07054938211706485
SVSIREGNRL	10	Unmodified	_SVSIREGNRL_					0	0	0			REV__nc|ENSG00000204264|P28062-2|PSMB8	REV__nc|ENSG00000204264|P28062-2|PSMB8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3179931640625	2	565.817461	1129.62037	3.4707	0.0019638	-1.1087	-0.0006273	2.362	0.0013365	566.3172268063734	23.46	0.96112	23.46	23.252	24.213	0					24	19	2	0	0	0	0.46989	1	7995	7995		44.377	0	1	604220	+		41199	17473	27475	27586	41740	41740					0.0607443362353024
SVSKDVVVSK	10	Unmodified	_SVSKDVVVSK_					0	0	0		ENST00000569796.1_1_16:2282158-2283271:+|nuORF;E4F1|p.E388Gfs*55|1|0.48|ENSG00000167967|chr16:2233539-2233540|-/G|frameshift_variant;E4F1|p.E717Rfs*3|1|0.25|ENSG00000167967|chr16:2235361-2235361|C/-|frameshift_variant;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.3059692382812	2	524.305864	1046.59717	2.0477	0.0010736	-1.4026	-0.00073541	0.64502	0.00033819	524.3052782077344	18.855	0.14013	18.855	18.773	18.913	0					9	4	3	0	0	0	0.0053822	1	5592	5592		164.66	41.455	1	225850			41200	868	27476	27587	41741	41741					0.07573994786184812
SVSKDVVVSK	10	Unmodified	_SVSKDVVVSK_					0	0	0		ENST00000569796.1_1_16:2282158-2283271:+|nuORF;E4F1|p.E388Gfs*55|1|0.48|ENSG00000167967|chr16:2233539-2233540|-/G|frameshift_variant;E4F1|p.E717Rfs*3|1|0.25|ENSG00000167967|chr16:2235361-2235361|C/-|frameshift_variant;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.3059692382812	2	524.305864	1046.59717	5.3452	0.0028025	-3.7657	-0.0019744	1.5795	0.00082812	524.3041861276532	18.58	0.079338	18.58	18.503	18.582	0					4	2	2	0	0	0	0.019305	1	4872	4872		125.68	35.081	1	50075			41201	868	27476	27587	41742	41742					0.07573994786184812
SVSKDVVVSK	10	Unmodified	_SVSKDVVVSK_					0	0	0		ENST00000569796.1_1_16:2282158-2283271:+|nuORF;E4F1|p.E388Gfs*55|1|0.48|ENSG00000167967|chr16:2233539-2233540|-/G|frameshift_variant;E4F1|p.E717Rfs*3|1|0.25|ENSG00000167967|chr16:2235361-2235361|C/-|frameshift_variant;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.3062133789062	2	524.305864	1046.59717	1.0108	0.00052996	-0.43791	-0.0002296	0.57287	0.00030036	524.3056276638168	18.805	0.18903	18.805	18.711	18.9	0					11	4	4	0	0	0	0.046394	1	5832	5832		110.54	22.364	1	673710			41202	868	27476	27587	41743	41743					0.07573994786184812
SVSKDVVVSK	10	Unmodified	_SVSKDVVVSK_					0	0	0		ENST00000569796.1_1_16:2282158-2283271:+|nuORF;E4F1|p.E388Gfs*55|1|0.48|ENSG00000167967|chr16:2233539-2233540|-/G|frameshift_variant;E4F1|p.E717Rfs*3|1|0.25|ENSG00000167967|chr16:2235361-2235361|C/-|frameshift_variant;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.3073120117188	2	524.305864	1046.59717	1.5842	0.00083063	-1.1918	-0.00062485	0.39248	0.00020578	524.3055987842513	18.635	0.11596	18.635	18.551	18.667	0					5	3	2	0	0	0	0.20322	1	4901	4901		79.07	36.206	1	55574			41203	868	27476	27587	41744	41744					0.07573994786184812
SVSKDVVVSK	10	Unmodified	_SVSKDVVVSK_					0	0	0		ENST00000569796.1_1_16:2282158-2283271:+|nuORF;E4F1|p.E388Gfs*55|1|0.48|ENSG00000167967|chr16:2233539-2233540|-/G|frameshift_variant;E4F1|p.E717Rfs*3|1|0.25|ENSG00000167967|chr16:2235361-2235361|C/-|frameshift_variant;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	ENST00000569796.1_1_16:2282158-2283271:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.3060913085938	2	524.305864	1046.59717	0.51888	0.00027205	-0.014645	-7.6782E-06	0.50423	0.00026437	524.305940810021	18.776	0.1485	18.776	18.669	18.818	0					10	3	4	0	0	0	0.010245	1	5696	5696		141.91	53.734	1	805620			41204	868	27476	27587	41745	41745					0.07573994786184812
SVSKNVNVK	9	Unmodified	_SVSKNVNVK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7853088378906	2	487.785099	973.555644	1.2648	0.00061695	-0.9004	-0.0004392	0.36439	0.00017775	487.78470435951664	15.564	0.096246	15.564	15.501	15.597	0					8	3	3	0	0	0	0.070005	1	3413	3413		88.177	14.202	1	182990			41205	7578	27477	27588	41746	41746					0.0678085881751258
SVSKNVNVK	9	Unmodified	_SVSKNVNVK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7849426269531	2	487.785099	973.555644	-0.081248	-3.9632E-05	-0.23667	-0.00011544	-0.31792	-0.00015508	487.7849912370364	15.841	0.11013	15.841	15.786	15.896	0					6	2	3	0	0	0	0.0067848	1	4421	4421		150.36	57.218	1	3451900			41206	7578	27477	27588	41747	41747					0.0678085881751258
SVSKNVNVK	9	Unmodified	_SVSKNVNVK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.78485107421875	2	487.785099	973.555644	0.46591	0.00022726	-0.81093	-0.00039556	-0.34502	-0.0001683	487.78470077517125	15.635	0.059592	15.635	15.58	15.639	0					6	2	3	0	0	0	0.013878	1	3542	3542		132.76	47.842	1	263660			41207	7578	27477	27588	41748	41748					0.0678085881751258
SVSKNVNVK	9	Unmodified	_SVSKNVNVK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7847595214844	2	487.785099	973.555644	-0.52977	-0.00025842	0.10182	4.9669E-05	-0.42795	-0.00020875	487.78510642549827	15.857	0.16607	15.857	15.747	15.913	0					7	3	3	0	0	0	0.003936	1	4261	4261		163.15	53.031	1	1498300			41208	7578	27477	27588	41749	41749					0.0678085881751258
SVSLFFFKL	9	Unmodified	_SVSLFFFKL_					0	0	0			REV__ENST00000562074.2_1_16:66839813-66842571:-|nuORF	REV__ENST00000562074.2_1_16:66839813-66842571:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.3150024414062	2	544.312961	1086.61137	3.6817	0.002004	-0.4631	-0.00025207	3.2186	0.0017519	544.3128971593762	13.374	0.33517	13.374	13.176	13.511	0					14	7	3	0	0	0	0.22837	1	3098	3098		60.972	4.2509	1	460750	+		41209	20303	27478	27589	41750	41750					0.07152692005138306
SVSLGNLQQQ	10	Unmodified	_SVSLGNLQQQ_					0	0	0			REV__ENSG00000124374|ENST00000244221|PAIP2B	REV__ENSG00000124374|ENST00000244221|PAIP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.28369140625	2	537.28292	1072.55129	0.041735	2.2423E-05	0.29135	0.00015654	0.33309	0.00017896	537.2831164880798	19.023	0.13208	19.023	18.954	19.086	0					10	4	3	0	0	0	0.010349	1	5069	5069		141.52	6.7548	1	493140	+		41210	14393	27479	27590	41751	41751					0.017913496039454913
SVSLMELLK	9	Unmodified	_SVSLMELLK_					0	0	0			REV__ENSG00000095015|ENST00000399503|MAP3K1	REV__ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2958068847656	2	510.293911	1018.57327	3.0443	0.0015535	0.66876	0.00034126	3.7131	0.0018948	510.29425536986616	19.22	0.31263	19.22	19.014	19.326	0					8	6	2	0	0	0	0.37197	1	5911	5911		44.117	44.117	1	1371600	+		41211	13465	27480	27591	41752	41752					0.06472438028163197
SVSLPSVKK	9	Unmodified	_SVSLPSVKK_					0	0	0		RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant	RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7920227050781	2	472.792392	943.570232	-0.33801	-0.00015981	-0.050613	-2.3929E-05	-0.38863	-0.00018374	472.79237927256366	24.318	0.71541	24.318	23.681	24.396	0					50	24	3	0	0	0	0.098791	1	7132	7132		79.713	2.9384	1	379260			41212	1162	27481	27592	41753	41753					0.0961893096566655
SVSLPSVKK	9	Unmodified	_SVSLPSVKK_					0	0	0		RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant	RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7920837402344	2	472.792392	943.570232	-0.55584	-0.00026279	0.22558	0.00010665	-0.33026	-0.00015614	472.7924707527192	24.611	1.0179	24.611	23.768	24.786	0					63	23	4	0	0	0	0.0086566	1	8258	8258		143.89	18.073	1	2630000			41213	1162	27481	27592	41754	41754					0.0961893096566655
SVSLPSVKK	9	Unmodified	_SVSLPSVKK_					0	0	0		RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant	RNF19A|p.R63Efs*5|1|0.16|ENSG00000034677|chr8:100287988-100287988|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7922668457031	2	472.792392	943.570232	-0.69033	-0.00032638	1.5547	0.00073507	0.86441	0.00040868	472.79347501806694	24.532	0.66604	24.532	23.979	24.645	0					23	13	3	0	0	0	0.19605	1	8611	8611		62.107	5.3864	1	223080			41214	1162	27481	27592	41755	41755					0.0961893096566655
SVSLPVRKK	9	Unmodified	_SVSLPVRKK_					0	0	0		nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.5538024902344	3	338.553715	1012.63931	-0.70279	-0.00023793	1.0006	0.00033877	0.29785	0.00010084	338.5540759720283	18.871	0.37811	18.871	18.615	18.993	0					21	12	3	0	0	0	0.61124	1	5009	5009		19.104	10.41	1	204340			41215	2169	27482	27593	41756	41756					0.13350014985235248
SVSLPVRKK	9	Unmodified	_SVSLPVRKK_					0	0	0		nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.82879638671875	2	507.326934	1012.63931	-1.9227	-0.00097543	2.0158	0.0010226	0.093075	4.722E-05	507.3280221730298	18.949	0.35461	18.949	18.667	19.021	0					14	8	2	0	0	0	0.16002	1	4970	4970		66.429	16.988	1	143040			41216	2169	27482	27593	41757	41757					0.13350014985235248
SVSNLKHSK	9	Unmodified	_SVSNLKHSK_					0	0	0		CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant;nc|ENSG00000183137|Q8IYX8-2|CEP57L1;CEP57L1|p.N421Ifs*7|1|0.13|ENSG00000183137|chr6:109162844-109162844|A/-|frameshift_variant;ENSG00000183137|ENST00000517392|CEP57L1	CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant	CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2823486328125	2	500.282723	998.550893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.353	1	13.353	12.853	13.853	0								0	0	0	0.24544	1	3021	3021		44.377	5.1244	1				41217	487	27483	27594	41758	41758					0.051559746747557256
SVSNLVTVF	9	Unmodified	_SVSNLVTVF_					0	0	0		ENST00000464083.5_1_6:36973566-36981682:+|nuORF;FGD2|p.K560Qfs*14|1|0.4|ENSG00000146192|chr6:37027495-37027496|-/G|frameshift_variant;ENSG00000146192|ENST00000274963|FGD2;ENST00000487975.5_1_6:36973566-36978850:+|nuORF;ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.26898193359375	2	483.26875	964.522947	0.032182	1.5553E-05	-0.36542	-0.0001766	-0.33324	-0.00016104	483.26851001335723	40.214	0.61149	40.214	40.016	40.628	0					91	36	5	0	0	0	0.15558	1	13081	13081		69.628	0	1	4337000			41218	4715	27484	27595	41759	41759					0.03926651694678185
SVSNLVTVF	9	Unmodified	_SVSNLVTVF_					0	0	0		ENST00000464083.5_1_6:36973566-36981682:+|nuORF;FGD2|p.K560Qfs*14|1|0.4|ENSG00000146192|chr6:37027495-37027496|-/G|frameshift_variant;ENSG00000146192|ENST00000274963|FGD2;ENST00000487975.5_1_6:36973566-36978850:+|nuORF;ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2680969238281	2	483.26875	964.522947	0.67852	0.00032791	-1.1938	-0.00057695	-0.51533	-0.00024904	483.2682420728701	40.543	0.90402	40.543	40.362	41.266	0					112	32	5	0	0	0	0.21419	1	16182	16182		52.937	0	1	30046000			41219	4715	27484	27595	41760	41760					0.03926651694678185
SVSNLVTVF	9	Unmodified	_SVSNLVTVF_					0	0	0		ENST00000464083.5_1_6:36973566-36981682:+|nuORF;FGD2|p.K560Qfs*14|1|0.4|ENSG00000146192|chr6:37027495-37027496|-/G|frameshift_variant;ENSG00000146192|ENST00000274963|FGD2;ENST00000487975.5_1_6:36973566-36978850:+|nuORF;ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.26910400390625	2	483.26875	964.522947	-0.27172	-0.00013132	-0.11056	-5.343E-05	-0.38228	-0.00018475	483.2686398877371	40.318	0.68689	40.318	40.079	40.766	0					104	37	5	0	0	0	0.12278	1	14403	14403		77.318	0	1	4702500			41220	4715	27484	27595	41761	41761					0.03926651694678185
SVSNMVHTAK	10	Unmodified	_SVSNMVHTAK_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2742919921875	2	537.274041	1072.53353	0.037546	2.0172E-05	0.23884	0.00012832	0.27639	0.0001485	537.2742135844842	19.618	0.13839	19.618	19.544	19.682	0					11	4	4	0	0	0	0.0029813	1	5334	5334		162.64	71.859	1	1026100			41221	2939	27485	27596	41762	41762					0.00016311077433783794
SVSNMVHTAK	10	Unmodified	_SVSNMVHTAK_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	358.5184020996094	3	358.518453	1072.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.806	1	19.806	19.306	20.306	0								0	0	0	0.23291	1	6322	6322		60.167	16.516	1				41222	2939	27485	27596	41763	41763					0.00016311077433783794
SVSNMVHTAK	10	Unmodified	_SVSNMVHTAK_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2744750976562	2	537.274041	1072.53353	0.29399	0.00015795	0.023585	1.2671E-05	0.31757	0.00017062	537.2741875467286	19.8	0.21764	19.8	19.693	19.91	0					13	4	4	0	0	0	0.0014809	1	6309	6309		180.09	108.21	1	6206200			41223	2939	27485	27596	41764	41764					0.00016311077433783794
SVSNMVHTAK	10	Unmodified	_SVSNMVHTAK_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.518310546875	3	358.518453	1072.53353	0.4123	0.00014782	-0.18312	-6.5652E-05	0.22918	8.2164E-05	358.51831347137266	19.639	0.10219	19.639	19.587	19.689	0					6	2	3	0	0	0	0.60147	1	5379	5379		34.087	9.8547	1	222560			41224	2939	27485	27596	41765	41765					0.00016311077433783794
SVSNMVHTAK	10	Unmodified	_SVSNMVHTAK_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.5183410644531	3	358.518453	1072.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.822	1	19.822	19.322	20.322	0								0	0	0	0.21987	1	6194	6194		61.765	18.9	1				41225	2939	27485	27596	41766	41766					0.00016311077433783794
SVSNMVHTAK	10	Oxidation (M)	_SVSNM(Oxidation (M))VHTAK_		SVSNM(1)VHTAK		SVSNM(63)VHTAK	0	0	1		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2718505859375	2	545.271498	1088.52844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.34	1	15.34	14.84	15.84	0								0	0	0	0.2063	1	4174	4174		63.426	16.97	1				41226	2939	27485	27597	41767	41767		127			-0.012279927851977845
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.R789Dfs*14|1|0.37|ENSG00000085832|chr1:51361350-51361350|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.78173828125	2	473.782025	945.549496	-0.017892	-8.4769E-06	-0.45716	-0.0002166	-0.47505	-0.00022507	473.7817987624509	24.799	0.31491	24.799	24.684	24.999	0					22	9	4	0	0	0	0.0040239	1	7365	7365		162.64	29.878	1	2655100			41227	1736	27486	27598	41768	41768					0.07454340585991304
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.R789Dfs*14|1|0.37|ENSG00000085832|chr1:51361350-51361350|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7816162109375	2	473.782025	945.549496	-0.12144	-5.7535E-05	-0.83478	-0.0003955	-0.95621	-0.00045304	473.7816431064785	25.065	0.36616	25.065	24.907	25.273	0					25	7	5	0	0	0	0.0019365	1	8835	8835		174.86	62.454	1	37697000			41228	1736	27486	27598	41769	41769					0.07454340585991304
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.R789Dfs*14|1|0.37|ENSG00000085832|chr1:51361350-51361350|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7817687988281	2	473.782025	945.549496	-0.12381	-5.866E-05	-0.45079	-0.00021357	-0.5746	-0.00027223	473.7817624807722	24.884	0.32995	24.884	24.784	25.114	0					21	7	4	0	0	0	5.2046E-05	1	7815	7815		195.57	45.211	1	4019300			41229	1736	27486	27598	41770	41770					0.07454340585991304
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.R789Dfs*14|1|0.37|ENSG00000085832|chr1:51361350-51361350|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.78167724609375	2	473.782025	945.549496	-0.58905	-0.00027908	-0.33444	-0.00015845	-0.92349	-0.00043753	473.7817869938095	25.02	0.36118	25.02	24.869	25.23	0					27	7	5	0	0	0	0.0019365	1	8692	8692		174.86	53.996	1	30745000			41230	1736	27486	27598	41771	41771					0.07454340585991304
SVSPASAGKRK	11	Unmodified	_SVSPASAGKRK_					0	0	0		MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.3151245117188	2	544.314554	1086.61456	1.9706	0.0010726	-1.3647	-0.00074283	0.60591	0.0003298	544.3139364577349	13.424	0.32587	13.424	13.282	13.608	0					13	7	3	0	0	0	0.12478	1	3260	3260		83.647	30.296	1	436340			41231	11384	27487	27599	41772	41772					0.07471335111858934
SVSPASAGKRK	11	Unmodified	_SVSPASAGKRK_					0	0	0		MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.31494140625	2	544.314554	1086.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.412	1	13.412	12.912	13.912	0								0	0	0	0.18331	1	3106	3106		65.157	15.621	1				41232	11384	27487	27599	41773	41773					0.07471335111858934
SVSPFLLGR	9	Unmodified	_SVSPFLLGR_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2845153808594	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.773	1	41.773	41.273	42.273	0								0	0	0	0.2591	1	16635	16635		42.396	8.2236	1				41233	7590	27488	27600	41774	41774					0.06662064168483539
SVSPFLLGR	9	Unmodified	_SVSPFLLGR_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2843322753906	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.842	1	41.842	41.342	42.342	0								0	0	0	0.27025	1	16666	16666		40.778	7.9657	1				41234	7590	27488	27600	41775	41775					0.06662064168483539
SVSPGLYSK	9	Unmodified	_SVSPGLYSK_					0	0	0		nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7539367675781	2	469.2531	936.491647	-1.1829	-0.00055509	0.52494	0.00024633	-0.65797	-0.00030876	469.25339572608493	24.503	0.18983	24.503	24.435	24.624	0					12	6	3	0	0	0	0.38666	1	7503	7503		42.864	8.6917	1	306130			41235	2108	27489	27601	41776	41776					0.0208607866057946
SVSPGLYSK	9	Unmodified	_SVSPGLYSK_					0	0	0		nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2529602050781	2	469.2531	936.491647	0.62269	0.0002922	-0.83969	-0.00039403	-0.21701	-0.00010183	469.25269631953546	24.755	0.26392	24.755	24.593	24.857	0					11	5	3	0	0	0	0.17062	1	8691	8691		65.157	8.4362	1	1042500			41236	2108	27489	27601	41777	41777					0.0208607866057946
SVSPGLYSK	9	Unmodified	_SVSPGLYSK_					0	0	0		nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2528076171875	2	469.2531	936.491647	-0.52277	-0.00024531	-0.37734	-0.00017707	-0.90011	-0.00042238	469.2530468268174	24.684	0.20719	24.684	24.58	24.787	0					9	4	3	0	0	0	0.11898	1	8557	8557		75.043	10.836	1	885410			41237	2108	27489	27601	41778	41778					0.0208607866057946
SVSPGLYSK	9	Unmodified	_SVSPGLYSK_					0	0	0		nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2529296875	2	469.2531	936.491647	0.54663	0.00025651	-0.77236	-0.00036243	-0.22572	-0.00010592	469.2527205159775	24.713	0.34912	24.713	24.565	24.914	0					17	7	4	0	0	0	0.10915	1	8550	8550		77.318	18.536	1	1356900			41238	2108	27489	27601	41779	41779					0.0208607866057946
SVSPVKATQK	10	Unmodified	_SVSPVKATQK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.8072509765625	2	522.806031	1043.59751	5.2183	0.0027281	-3.7602	-0.0019659	1.458	0.00076227	522.804300881372	15.988	0.094817	15.988	15.936	16.031	0					5	3	2	0	0	0	0.16745	1	3758	3758		83.647	8.6037	1	39408			41239	4322	27490	27602	41780	41780					0.07745414506030102
SVSPVKATQK	10	Unmodified	_SVSPVKATQK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.806396484375	2	522.806031	1043.59751	1.0466	0.00054715	-0.43895	-0.00022949	0.60761	0.00031766	522.8057237720409	16.238	0.16849	16.238	16.128	16.297	0					8	3	3	0	0	0	0.13663	1	4590	4590		89.029	17.733	1	605880			41240	4322	27490	27602	41781	41781					0.07745414506030102
SVSPVKATQK	10	Unmodified	_SVSPVKATQK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.8068237304688	2	522.806031	1043.59751	0.45164	0.00023612	0.51939	0.00027154	0.97103	0.00050766	522.8063859613385	16.21	0.16957	16.21	16.097	16.267	0					10	3	4	0	0	0	0.01518	1	4431	4431		128.6	51.285	1	861550			41241	4322	27490	27602	41782	41782					0.07745414506030102
SVSPVVHVR	9	Unmodified	_SVSPVVHVR_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2872314453125	2	490.287808	978.561064	-0.4804	-0.00023553	-0.065124	-3.193E-05	-0.54553	-0.00026746	490.2877686198458	22.379	0.7332	22.379	22.197	22.93	0					39	17	5	0	0	0	0.078509	1	7222	7222		85.161	13.283	1	12862000			41242	4589	27491	27603	41783	41783					0.07092582399991443
SVSPVVHVR	9	Unmodified	_SVSPVVHVR_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2879943847656	2	490.287808	978.561064	-0.72347	-0.00035471	0.34712	0.00017019	-0.37635	-0.00018452	490.2880166815066	22.246	0.36485	22.246	22.086	22.451	0					20	7	4	0	0	0	0.1424	1	7467	7467		69.628	3.1983	1	3511500			41243	4589	27491	27603	41784	41784					0.07092582399991443
SVSQAVFAR	9	Unmodified	_SVSQAVFAR_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.76348876953125	2	482.764166	963.513779	3.4766	0.0016784	-3.9346	-0.0018995	-0.45802	-0.00022111	482.76243791295434	28.286	0.1848	28.286	28.211	28.396	0					9	6	2	0	0	0	0.011389	1	9109	9109		138.06	55.822	1	62377			41244	3095	27492	27604	41785	41785					0.030563031289943865
SVSQAVFAR	9	Unmodified	_SVSQAVFAR_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.7640075683594	2	482.764166	963.513779	-0.10092	-4.8722E-05	-0.6946	-0.00033533	-0.79552	-0.00038405	482.76385088300265	28.541	0.26268	28.541	28.432	28.695	0					11	5	3	0	0	0	0.02429	1	10458	10458		114.89	48.465	1	773420			41245	3095	27492	27604	41786	41786					0.030563031289943865
SVSQAVFAR	9	Unmodified	_SVSQAVFAR_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7646789550781	2	482.764166	963.513779	0.18916	9.1318E-05	0.47407	0.00022887	0.66323	0.00032018	482.76451837977703	28.345	0.17885	28.345	28.253	28.432	0					7	4	2	0	0	0	0.04067	1	9387	9387		98.582	41.861	1	131410			41246	3095	27492	27604	41787	41787					0.030563031289943865
SVSQAVFAR	9	Unmodified	_SVSQAVFAR_					0	0	0		ENST00000483346.2_1_2:200213306-200233427:-|nuORF;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.76385498046875	2	482.764166	963.513779	-0.60688	-0.00029298	-0.063564	-3.0686E-05	-0.67044	-0.00032366	482.76411064839203	28.469	0.31565	28.469	28.359	28.675	0					13	6	3	0	0	0	0.017421	1	10327	10327		126.24	27.613	1	947320			41247	3095	27492	27604	41788	41788					0.030563031289943865
SVSQKLMAK	9	Unmodified	_SVSQKLMAK_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.2834167480469	2	496.283877	990.553201	-0.060437	-2.9994E-05	-0.74641	-0.00037043	-0.80685	-0.00040043	496.2837922386403	19.799	0.30658	19.799	19.727	20.034	0					13	9	3	0	0	0	0.12834	1	5179	5179		72.879	12.761	1	225270			41248	4149	27493	27605	41789	41789					0.057546870882106305
SVSQKLMAK	9	Unmodified	_SVSQKLMAK_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.28363037109375	2	496.283877	990.553201	-0.35379	-0.00017558	-0.16176	-8.028E-05	-0.51555	-0.00025586	496.28389523213264	20.15	0.42806	20.15	20.05	20.478	0					19	9	3	0	0	0	0.0088974	1	6206	6206		143.37	63.661	1	1891700			41249	4149	27493	27605	41790	41790					0.057546870882106305
SVSQKLMAK	9	Unmodified	_SVSQKLMAK_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2834167480469	2	496.283877	990.553201	-1.1917	-0.0005914	0.75642	0.0003754	-0.43524	-0.000216	496.2845377188635	19.846	0.13802	19.846	19.779	19.917	0					9	4	3	0	0	0	0.078509	1	5435	5435		85.161	8.3867	1	342200			41250	4149	27493	27605	41791	41791					0.057546870882106305
SVSQKLMAK	9	Unmodified	_SVSQKLMAK_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.28375244140625	2	496.283877	990.553201	0.73953	0.00036702	-1.4178	-0.00070364	-0.67829	-0.00033663	496.283172479598	20.02	0.46988	20.02	19.91	20.38	0					15	9	2	0	0	0	0.003936	1	6433	6433		163.15	72.55	1	2346100			41251	4149	27493	27605	41792	41792					0.057546870882106305
SVSQKLMAK	9	Unmodified	_SVSQKLMAK_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.28350830078125	2	496.283877	990.553201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.882	1	19.882	19.382	20.382	0								0	0	0	0.010168	1	5487	5487		109.48	35.223	1				41252	4149	27493	27605	41793	41793					0.057546870882106305
SVSQKLMAK	9	Unmodified	_SVSQKLMAK_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.28375244140625	2	496.283877	990.553201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.064	1	20.064	19.564	20.564	0								0	0	0	0.00049573	1	6310	6310		138.06	50.308	1				41253	4149	27493	27605	41794	41794					0.057546870882106305
SVSQPIMVQR	10	Unmodified	_SVSQPIMVQR_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.8111572265625	2	572.81079	1143.60703	1.4707	0.00084241	-1.1262	-0.00064511	0.34445	0.0001973	572.8103190685778	27.819	0.17266	27.819	27.718	27.891	0					8	5	2	0	0	0	0.24545	1	8617	8617		70.399	10.28	1	109000			41254	3933	27494	27606	41795	41795					0.04096859519904683
SVSQPIMVQR	10	Unmodified	_SVSQPIMVQR_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.3143920898438	2	572.81079	1143.60703	1.0759	0.00061628	-0.62667	-0.00035896	0.44923	0.00025732	572.81050098908	27.813	0.28032	27.813	27.708	27.988	0					17	9	3	0	0	0	0.11137	1	8598	8598		81.525	41.467	1	547540			41255	3933	27494	27606	41796	41796					0.04096859519904683
SVSQPIMVQR	10	Unmodified	_SVSQPIMVQR_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.8112182617188	2	572.81079	1143.60703	1.7086	0.00097873	-1.3094	-0.00075003	0.39927	0.0002287	572.8104254569918	28.084	0.2559	28.084	27.965	28.221	0					16	6	4	0	0	0	0.007513	1	9878	9878		145.46	46.831	1	832990			41256	3933	27494	27606	41797	41797					0.04096859519904683
SVSQPIMVQR	10	Unmodified	_SVSQPIMVQR_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.8113403320312	2	572.81079	1143.60703	-0.11244	-6.4407E-05	0.46585	0.00026684	0.3534	0.00020243	572.8112711167972	28.078	0.33786	28.078	27.953	28.291	0					28	8	5	0	0	0	0.0084686	1	9868	9868		140.11	62.795	1	2970000			41257	3933	27494	27606	41798	41798					0.04096859519904683
SVSQPIMVQR	10	Unmodified	_SVSQPIMVQR_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.81103515625	2	572.81079	1143.60703	0.075637	4.3326E-05	0.21701	0.00012431	0.29265	0.00016763	572.8111039258217	27.826	0.28736	27.826	27.735	28.022	0					30	10	4	0	0	0	0.068922	1	8891	8891		91.265	30.971	1	1291200			41258	3933	27494	27606	41799	41799					0.04096859519904683
SVSQPIMVQR	10	Unmodified	_SVSQPIMVQR_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.8108520507812	2	572.81079	1143.60703	0.61369	0.00035153	-0.48526	-0.00027796	0.12843	7.3565E-05	572.8106999860782	27.867	0.25999	27.867	27.743	28.003	0					19	6	4	0	0	0	0.007513	1	9164	9164		145.46	57.764	1	1091400			41259	3933	27494	27606	41800	41800					0.04096859519904683
SVSQPIMVQR	10	Unmodified	_SVSQPIMVQR_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.810791015625	2	572.81079	1143.60703	1.6541	0.0009475	-1.5249	-0.00087348	0.12922	7.4019E-05	572.8101208633489	28.002	0.36687	28.002	27.894	28.261	0					25	7	5	0	0	0	0.00085072	1	10101	10101		174.86	79.05	1	6271700			41260	3933	27494	27606	41801	41801					0.04096859519904683
SVSRKQAR	8	Unmodified	_SVSRKQAR_					0	0	0		ENSG00000149929|ENST00000279392|HIRIP3	ENSG00000149929|ENST00000279392|HIRIP3	ENSG00000149929|ENST00000279392|HIRIP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2761535644531	2	466.275232	930.535912	4.0464	0.0018867	-0.67542	-0.00031493	3.371	0.0015718	466.2749906743034	33.672	0.35796	33.672	33.466	33.824	0					20	13	2	0	0	0	0.72381	1	11260	11260		30.504	0	1	62230			41261	4913	27495	27607	41802	41802					0.06786527597409986
SVSRSPVPEK	10	Unmodified	_SVSRSPVPEK_					0	0	0		ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.30126953125	2	543.301113	1084.58767	1.8463	0.0010031	-0.42096	-0.00022871	1.4253	0.00077439	543.3010260284448	17.43	0.14344	17.43	17.361	17.504	0					9	5	2	0	0	0	0.11826	1	4148	4148		92.239	13.975	1	137000			41262	2055	27496	27608	41803	41803					0.04876226500641678
SVSRSPVPEK	10	Unmodified	_SVSRSPVPEK_					0	0	0		ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.5364074707031	3	362.536501	1084.58767	-0.94529	-0.0003427	2.001	0.00072545	1.0557	0.00038274	362.53708851287774	17.471	0.1226	17.471	17.413	17.536	0					7	4	2	0	0	0	0.56063	1	4376	4376		43.419	9.332	1	80365			41263	2055	27496	27608	41804	41804					0.04876226500641678
SVSRSPVPEK	10	Unmodified	_SVSRSPVPEK_					0	0	0		ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.3013305664062	2	543.301113	1084.58767	2.0158	0.0010952	-1.1962	-0.00064991	0.8196	0.00044529	543.3003305892871	17.693	0.52192	17.693	17.583	18.105	0					28	10	4	0	0	0	0.041183	1	5310	5310		112.3	28.648	1	1959000			41264	2055	27496	27608	41805	41805					0.04876226500641678
SVSRSPVPEK	10	Unmodified	_SVSRSPVPEK_					0	0	0		ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.53643798828125	3	362.536501	1084.58767	1.3787	0.00049983	-1.1912	-0.00043185	0.18751	6.7979E-05	362.5360027980228	17.693	0.57234	17.693	17.583	18.156	0					25	11	4	0	0	0	0.39647	1	5312	5312		77.288	15.18	1	1711100			41265	2055	27496	27608	41806	41806					0.04876226500641678
SVSRTPTI	8	Unmodified	_SVSRTPTI_					0	0	0		nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92;ENSG00000114656|ENST00000645291|CFAP92	nc|ENSG00000114656|Q9ULG3-2|CFAP92	nc|ENSG00000114656|Q9ULG3-2|CFAP92	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7456970214844	2	430.745442	859.476331	0.19307	8.3164E-05	-0.5745	-0.00024746	-0.38143	-0.0001643	430.7452971402322	28.901	0.14623	28.901	28.806	28.953	0					5	3	2	0	0	0	0.69548	1	9646	9646		34.173	0	1	105010			41266	2860	27497	27609	41807	41807					0.04097211863370376
SVSSDRIQK	9	Unmodified	_SVSSDRIQK_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1;PNRC1|p.K251Sfs*14|2|0.25|ENSG00000146278|chr6:89083958-89083958|A/-|frameshift_variant;ENSG00000146278|ENST00000336032|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2772521972656	2	510.277638	1018.54072	-0.11602	-5.92E-05	0.13043	6.6555E-05	0.014414	7.355E-06	510.277756154133	15.808	0.15091	15.808	15.728	15.879	0					16	6	4	0	0	0	0.02953	1	3486	3486		109.48	39.851	1	1899700			41267	4723	27498	27610	41808	41808					0.032193669495200083
SVSSDRIQK	9	Unmodified	_SVSSDRIQK_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1;PNRC1|p.K251Sfs*14|2|0.25|ENSG00000146278|chr6:89083958-89083958|A/-|frameshift_variant;ENSG00000146278|ENST00000336032|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.27740478515625	2	510.277638	1018.54072	-0.010002	-5.1038E-06	0.70925	0.00036191	0.69925	0.00035681	510.27796765192596	16.104	0.18675	16.104	16.007	16.194	0					13	4	4	0	0	0	0.012936	1	4283	4283		134.77	38.95	1	16629000			41268	4723	27498	27610	41809	41809					0.032193669495200083
SVSSDRIQK	9	Unmodified	_SVSSDRIQK_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1;PNRC1|p.K251Sfs*14|2|0.25|ENSG00000146278|chr6:89083958-89083958|A/-|frameshift_variant;ENSG00000146278|ENST00000336032|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2777404785156	2	510.277638	1018.54072	-0.31114	-0.00015877	0.053362	2.7229E-05	-0.25778	-0.00013154	510.27764218463454	15.811	0.14628	15.811	15.74	15.887	0					10	5	3	0	0	0	0.020674	1	3669	3669		120.87	38.118	1	904480			41269	4723	27498	27610	41810	41810					0.032193669495200083
SVSSDRIQK	9	Unmodified	_SVSSDRIQK_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1;PNRC1|p.K251Sfs*14|2|0.25|ENSG00000146278|chr6:89083958-89083958|A/-|frameshift_variant;ENSG00000146278|ENST00000336032|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2777099609375	2	510.277638	1018.54072	-0.42074	-0.00021469	0.42051	0.00021458	-0.00022169	-1.1312E-07	510.277897738875	16.055	0.16687	16.055	15.946	16.112	0					8	3	3	0	0	0	0.012936	1	4523	4523		134.77	41.622	1	4957200			41270	4723	27498	27610	41811	41811					0.032193669495200083
SVSSGVQIL	9	Unmodified	_SVSSGVQIL_					0	0	0		ENSG00000136866|ENST00000374227|ZFP37;nc|ENSG00000136866|Q9Y6Q3-3|ZFP37;nc|ENSG00000136866|Q9Y6Q3-2|ZFP37;ZFP37|p.N161Ifs*24|1|0.47|ENSG00000136866|chr9:113044136-113044136|T/-|frameshift_variant	ENSG00000136866|ENST00000374227|ZFP37	ENSG00000136866|ENST00000374227|ZFP37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.25299072265625	2	445.2531	888.491647	0.4588	0.00020428	-0.82113	-0.00036561	-0.36234	-0.00016133	445.25269369655115	22.496	0.46469	22.496	22.17	22.635	0					21	10	3	0	0	0	0.4966	1	6613	6613		32.812	3.6629	1	163480			41271	4120	27499	27611	41812	41812					0.04294078660575451
SVSSLPLKE	9	Unmodified	_SVSSLPLKE_					0	0	0			REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.271484375	2	480.274032	958.533512	-0.64569	-0.00031011	-1.0176	-0.00048873	-1.6633	-0.00079884	480.27194419696264	36.268	0.4654	36.268	36.03	36.496	0					14	9	2	0	0	0	0.33044	1	14053	14053		47.657	1.6851	1	147580	+		41272	14722	27500	27612	41813	41813					0.05258634349092972
SVSSPTVGK	9	Unmodified	_SVSSPTVGK_					0	0	0		nc|ENSG00000123411|Q9H2S9-2|IKZF4;ENST00000551124.5_1_12:56418779-56429112:+|nuORF;ENSG00000123411|ENST00000547167|IKZF4	nc|ENSG00000123411|Q9H2S9-2|IKZF4	nc|ENSG00000123411|Q9H2S9-2|IKZF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2374572753906	2	431.23745	860.460347	0.19101	8.2371E-05	-0.041856	-1.805E-05	0.14916	6.4321E-05	431.2376955396338	18.855	0.33619	18.855	18.695	19.031	0					11	9	2	0	0	0	0.41113	1	5594	5594		40.778	1.5253	1	33613			41273	3318	27501	27613	41814	41814					0.02453505626488095
SVSSPVKSK	9	Unmodified	_SVSSPVKSK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant;MGA|p.R614Efs*7|1|0.35|ENSG00000174197|chr15:41696846-41696846|A/-|frameshift_variant;MGA|p.R155Efs*24|1|0.31|ENSG00000174197|chr15:41669352-41669353|-/G|frameshift_variant;MGA|p.H151Pfs*66|1|0.03|ENSG00000174197|chr15:41669345-41669346|-/CA|frameshift_variant;MGA|p.H151Vfs*67|1|0.05|ENSG00000174197|chr15:41669343-41669344|-/TGTTA|frameshift_variant;MGA|p.N416Vfs*7|1|0.13|ENSG00000174197|chr15:41696254-41696257|CAAA/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.76568603515625	2	459.766374	917.518196	-0.42924	-0.00019735	-0.23146	-0.00010642	-0.6607	-0.00030377	459.7662164106672	15.236	0.26315	15.236	15.044	15.307	0					20	9	3	0	0	0	0.36892	1	3241	3241		44.377	5.1244	1	289490			41274	6474	27502	27614	41815	41815					0.056137675519039476
SVSSPVKSK	9	Unmodified	_SVSSPVKSK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant;MGA|p.R614Efs*7|1|0.35|ENSG00000174197|chr15:41696846-41696846|A/-|frameshift_variant;MGA|p.R155Efs*24|1|0.31|ENSG00000174197|chr15:41669352-41669353|-/G|frameshift_variant;MGA|p.H151Pfs*66|1|0.03|ENSG00000174197|chr15:41669345-41669346|-/CA|frameshift_variant;MGA|p.H151Vfs*67|1|0.05|ENSG00000174197|chr15:41669343-41669344|-/TGTTA|frameshift_variant;MGA|p.N416Vfs*7|1|0.13|ENSG00000174197|chr15:41696254-41696257|CAAA/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.76605224609375	2	459.766374	917.518196	-0.67601	-0.00031081	0.38486	0.00017694	-0.29116	-0.00013386	459.76653630789644	15.539	0.42807	15.539	15.23	15.658	0					26	10	4	0	0	0	0.085655	1	3999	3999		82.75	13.964	1	1085800			41275	6474	27502	27614	41816	41816					0.056137675519039476
SVSSPVKSK	9	Unmodified	_SVSSPVKSK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant;MGA|p.R614Efs*7|1|0.35|ENSG00000174197|chr15:41696846-41696846|A/-|frameshift_variant;MGA|p.R155Efs*24|1|0.31|ENSG00000174197|chr15:41669352-41669353|-/G|frameshift_variant;MGA|p.H151Pfs*66|1|0.03|ENSG00000174197|chr15:41669345-41669346|-/CA|frameshift_variant;MGA|p.H151Vfs*67|1|0.05|ENSG00000174197|chr15:41669343-41669344|-/TGTTA|frameshift_variant;MGA|p.N416Vfs*7|1|0.13|ENSG00000174197|chr15:41696254-41696257|CAAA/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2671813964844	2	459.766374	917.518196	-1.1344	-0.00052156	0.75312	0.00034626	-0.38128	-0.0001753	459.7668247665753	15.266	0.2593	15.266	15.088	15.348	0					19	9	3	0	0	0	0.53064	1	3404	3404		29.17	6.1276	1	217080			41276	6474	27502	27614	41817	41817					0.056137675519039476
SVSSPVKSK	9	Unmodified	_SVSSPVKSK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant;MGA|p.R614Efs*7|1|0.35|ENSG00000174197|chr15:41696846-41696846|A/-|frameshift_variant;MGA|p.R155Efs*24|1|0.31|ENSG00000174197|chr15:41669352-41669353|-/G|frameshift_variant;MGA|p.H151Pfs*66|1|0.03|ENSG00000174197|chr15:41669345-41669346|-/CA|frameshift_variant;MGA|p.H151Vfs*67|1|0.05|ENSG00000174197|chr15:41669343-41669344|-/TGTTA|frameshift_variant;MGA|p.N416Vfs*7|1|0.13|ENSG00000174197|chr15:41696254-41696257|CAAA/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7658996582031	2	459.766374	917.518196	-0.77913	-0.00035822	0.28393	0.00013054	-0.4952	-0.00022768	459.7664916185921	15.505	0.45632	15.505	15.212	15.669	0					21	9	3	0	0	0	0.070005	1	4219	4219		88.177	27.205	1	947060			41277	6474	27502	27614	41818	41818					0.056137675519039476
SVSSRQAQK	9	Unmodified	_SVSSRQAQK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7708740234375	2	495.76998	989.525407	0.72146	0.00035768	-0.22333	-0.00011072	0.49813	0.00024696	495.76984547732076	11.373	0.1221	11.373	11.316	11.438	0					10	4	3	0	0	0	0.032383	1	2308	2308		106.68	29.365	1	366030			41278	1212	27503	27615	41819	41819					0.030225001523263018
SVSSSTHFTR	10	Unmodified	_SVSSSTHFTR_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.773193359375	2	554.772719	1107.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.109	1	19.109	18.609	19.609	0								0	0	0	0.34574	1	4881	4881		43.651	9.4782	1				41279	1892	27504	27616	41820	41820					-0.01857821055864406
SVSSVSTLK	9	Unmodified	_SVSSVSTLK_					0	0	0		ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2580261230469	2	454.258382	906.502212	-0.42047	-0.000191	-0.25832	-0.00011734	-0.67879	-0.00030835	454.25829332111374	23.089	0.36116	23.089	22.789	23.15	0					12	7	3	0	0	0	0.35021	1	7697	7697		45.972	8.8131	1	676630			41280	3037	27505	27617	41821	41821					0.045220613150036115
SVSTCSKPL	9	Carbamidomethyl (C)	_SVSTC(Carbamidomethyl (C))SKPL_	SVSTC(1)SKPL		SVSTC(71)SKPL		0	1	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7483215332031	2	489.749867	977.485181	-0.52528	-0.00025725	-3.0314	-0.0014846	-3.5567	-0.0017419	489.74841150976255	31.661	0.21505	31.661	31.571	31.786	0					7	4	2	0	0	0	0.13519	1	11858	11858		71.296	9.1883	1	151130	+		41281	14825	27506	27618	41822	41822	545				-0.004461825624503035
SVSTFLKKK	9	Unmodified	_SVSTFLKKK_					0	0	0		DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.321533203125	2	519.321317	1036.62808	0.060446	3.1391E-05	0.37614	0.00019534	0.43658	0.00022673	519.3215239321202	20.888	0.14894	20.888	20.782	20.931	0					9	3	3	0	0	0	0.061298	1	6560	6560		75.043	12.936	1	1807600			41282	765	27507	27619	41823	41823					0.11123192891068356
SVSTFLKKK	9	Unmodified	_SVSTFLKKK_					0	0	0		DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.5498962402344	3	346.54997	1036.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.833	1	20.833	20.333	21.333	0								0	0	0	0.3245	1	6811	6811		30.318	10.321	1				41283	765	27507	27619	41824	41824					0.11123192891068356
SVSTFLKKK	9	Unmodified	_SVSTFLKKK_					0	0	0		DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.3213500976562	2	519.321317	1036.62808	-1.3689	-0.0007109	1.3552	0.00070379	-0.013694	-7.1116E-06	519.3220554733704	20.637	0.10584	20.637	20.586	20.692	0					6	2	3	0	0	0	0.36135	1	5851	5851		37.812	0	1	165410			41284	765	27507	27619	41825	41825					0.11123192891068356
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2874450683594	2	493.287474	984.560395	-0.070555	-3.4804E-05	-0.088953	-4.3879E-05	-0.15951	-7.8683E-05	493.28742691548723	21.68	0.1665	21.68	21.605	21.771	0					9	5	2	0	0	0	0.24334	1	6025	6025		56.434	12.317	1	446940			41285	6690	27508	27620	41826	41826					0.06749742960289495
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2872009277344	2	493.287474	984.560395	-0.50454	-0.00024888	0.068025	3.3556E-05	-0.43651	-0.00021533	493.2874612183995	22.026	0.22169	22.026	21.898	22.119	0					10	5	2	0	0	0	0.011389	1	7097	7097		138.06	58.35	1	2541200			41286	6690	27508	27620	41827	41827					0.06749742960289495
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2871398925781	2	493.287474	984.560395	-1.268	-0.0006255	1.0537	0.00051979	-0.2143	-0.00010571	493.28789680008305	21.709	0.1895	21.709	21.635	21.825	0					16	5	4	0	0	0	0.015496	1	6283	6283		129.42	39.051	1	1994500			41287	6690	27508	27620	41828	41828					0.06749742960289495
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2873229980469	2	493.287474	984.560395	0.62632	0.00030896	-0.79317	-0.00039126	-0.16685	-8.2307E-05	493.2869741489422	21.916	0.26153	21.916	21.809	22.07	0					19	5	5	0	0	0	0.0076184	1	7326	7326		146.79	59.089	1	10888000			41288	6690	27508	27620	41829	41829					0.06749742960289495
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2872314453125	2	493.287474	984.560395	0.0068428	3.3755E-06	-0.57592	-0.00028409	-0.56907	-0.00028072	493.2873030922102	21.767	0.14852	21.767	21.671	21.82	0					7	3	3	0	0	0	0.047855	1	6378	6378		96.034	18.716	1	817090			41289	6690	27508	27620	41830	41830					0.06749742960289495
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.28717041015625	2	493.287474	984.560395	0.86982	0.00042907	-1.2343	-0.00060887	-0.36448	-0.00017979	493.28693703097684	21.928	0.4153	21.928	21.823	22.239	0					21	8	4	0	0	0	0.032383	1	7226	7226		106.68	46.565	1	3498300			41290	6690	27508	27620	41831	41831					0.06749742960289495
SVSTITRIYR	10	Unmodified	_SVSTITRIYR_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	598.3436279296875	2	598.343312	1194.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.135	1	28.135	27.635	28.635	0								0	0	0	0.4044	1	8753	8753		29.17	5.6474	1				41291	11216	27509	27621	41832	41832					0.08252177317422138
SVSTITTIGY	10	Unmodified	_SVSTITTIGY_					0	0	0		nc|ENSG00000124780|Q96T54-4|KCNK17;KCNK17|p.G168Afs*61|3|0.31|ENSG00000124780|chr6:39304505-39304505|C/-|frameshift_variant;ENSG00000124780|ENST00000373231|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.27783203125	2	521.276772	1040.53899	0.37716	0.0001966	1.5052	0.00078464	1.8824	0.00098124	521.2774706326609	27.111	0.47375	27.111	27.002	27.476	0					12	9	2	0	0	0	0.52707	1	9675	9675		42.396	3.1433	1	1217300			41292	11507	27510	27622	41833	41833					0.020343131409163107
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7972412109375	2	481.797675	961.580796	0.079726	3.8412E-05	-0.61746	-0.00029749	-0.53773	-0.00025908	481.7972888944218	21.349	0.1757	21.349	21.263	21.438	0					13	5	3	0	0	0	0.037712	1	5857	5857		101.46	33.966	1	845440			41293	5229	27511	27623	41834	41834					0.0984691362009471
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7974853515625	2	481.797675	961.580796	-0.11188	-5.3904E-05	-0.33676	-0.00016225	-0.44865	-0.00021616	481.7975232546776	21.69	0.31782	21.69	21.55	21.867	0					18	7	4	0	0	0	0.022698	1	6917	6917		117.53	44.646	1	5990400			41294	5229	27511	27623	41835	41835					0.0984691362009471
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7973937988281	2	481.797675	961.580796	-1.3306	-0.00064107	0.56901	0.00027415	-0.76158	-0.00036693	481.79789662348634	21.378	0.17933	21.378	21.282	21.462	0					15	5	4	0	0	0	0.11411	1	6110	6110		76.17	26.145	1	868920			41295	5229	27511	27623	41836	41836					0.0984691362009471
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.7969665527344	2	481.797675	961.580796	-0.41425	-0.00019959	-0.4887	-0.00023546	-0.90295	-0.00043504	481.7973533966529	21.359	0.082874	21.359	21.304	21.386	0					4	2	2	0	0	0	0.1424	1	6119	6119		69.628	20.186	1	70335			41296	5229	27511	27623	41837	41837					0.0984691362009471
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7977294921875	2	481.797675	961.580796	-0.54867	-0.00026435	0.52047	0.00025076	-0.028203	-1.3588E-05	481.79796817687026	21.6	0.11641	21.6	21.492	21.608	0					6	2	3	0	0	0	0.15558	1	7176	7176		66.962	19.002	1	427080			41297	5229	27511	27623	41838	41838					0.0984691362009471
SVSTLSFGVN	10	Unmodified	_SVSTLSFGVN_					0	0	0		nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-2|DYSF;DYSF|p.F1290Lfs*55|1|0.1|ENSG00000135636|chr2:71601522-71601522|T/-|frameshift_variant;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-6|DYSF;DYSF|p.F1960Lfs*6|1|0.23|ENSG00000135636|chr2:71679165-71679165|T/-|frameshift_variant;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-3|DYSF	nc|ENSG00000135636|O75923-3|DYSF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7610168457031	2	505.761289	1009.50803	0.82086	0.00041516	-0.73879	-0.00037365	0.082067	4.1506E-05	505.7609427869112	37.566	0.68004	37.566	37.423	38.103	0					70	24	4	0	0	0	0.62235	1	14386	14386		31.53	2.3598	1	17766000			41298	11537	27512	27624	41839	41839					0.0036515982667424396
SVSTPLIIK	9	Unmodified	_SVSTPLIIK_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.3028869628906	2	479.302593	956.590633	0.4787	0.00022944	-0.82153	-0.00039376	-0.34283	-0.00016432	479.30213767673126	34.71	0.39948	34.71	34.505	34.904	0					23	10	3	0	0	0	0.032052	1	12908	12908		107.01	22.092	1	977590			41299	1142	27513	27625	41840	41840					0.11060101625480456
SVSTPLIIK	9	Unmodified	_SVSTPLIIK_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.3025207519531	2	479.302593	956.590633	-0.11446	-5.4861E-05	-0.065132	-3.1218E-05	-0.17959	-8.6079E-05	479.302541264252	34.662	0.44574	34.662	34.466	34.912	0					35	12	4	0	0	0	0.27249	1	13333	13333		52.937	5.2794	1	1984300			41300	1142	27513	27625	41841	41841					0.11060101625480456
SVSTPLIIK	9	Unmodified	_SVSTPLIIK_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.30267333984375	2	479.302593	956.590633	-0.65976	-0.00031622	0.80337	0.00038506	0.14362	6.8835E-05	479.30307316555684	34.643	0.35728	34.643	34.443	34.8	0					21	7	4	0	0	0	0.13267	1	13262	13262		71.877	7.6702	1	1227300			41301	1142	27513	27625	41842	41842					0.11060101625480456
SVSTQQPPK	9	Unmodified	_SVSTQQPPK_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2613220214844	2	486.261456	970.50836	0.0122	5.9325E-06	-0.39729	-0.00019319	-0.38509	-0.00018725	486.26123075296937	16.444	0.34188	16.444	16.263	16.605	0					25	12	3	0	0	0	0.10915	1	3717	3717		77.318	22.541	1	1085100			41302	4652	27514	27626	41843	41843					0.02192579546522211
SVSTQQPPK	9	Unmodified	_SVSTQQPPK_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2611999511719	2	486.261456	970.50836	-0.29095	-0.00014148	-0.24241	-0.00011787	-0.53336	-0.00025935	486.2613176374634	16.736	0.41915	16.736	16.481	16.9	0					28	10	4	0	0	0	0.022525	1	4568	4568		117.81	30.115	1	5719900			41303	4652	27514	27626	41844	41844					0.02192579546522211
SVSTQQPPK	9	Unmodified	_SVSTQQPPK_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2609558105469	2	486.261456	970.50836	-0.24082	-0.0001171	-0.030783	-1.4968E-05	-0.2716	-0.00013207	486.26139104356884	16.519	0.31119	16.519	16.296	16.607	0					19	8	4	0	0	0	0.021961	1	3894	3894		118.74	41.969	1	828970			41304	4652	27514	27626	41845	41845					0.02192579546522211
SVSTQQPPKK	10	Unmodified	_SVSTQQPPKK_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.3092651367188	2	550.308938	1098.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.126	1	14.126	13.626	14.626	0								0	0	0	0.3598	1	2862	2862		41.427	12.277	1				41305	4652	27515	27627	41846	41846					0.05796513017708094
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;HBA1|p.A131T|1|0.07|ENSG00000206172|chr16:177373-177373|G/A|missense_variant	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.26666259765625	2	461.266207	920.517862	0.72687	0.00033528	-0.52773	-0.00024342	0.19914	9.1856E-05	461.2660203581835	25.665	0.24656	25.665	25.568	25.815	0					13	6	3	0	0	0	0.13726	1	7738	7738		70.816	30.038	1	155370			41306	7254	27516	27628	41847	41847					0.05442347832035921
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;HBA1|p.A131T|1|0.07|ENSG00000206172|chr16:177373-177373|G/A|missense_variant	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2662048339844	2	461.266207	920.517862	0.099705	4.5991E-05	-0.55363	-0.00025537	-0.45393	-0.00020938	461.2659367542769	25.667	0.32046	25.667	25.56	25.881	0					23	7	4	0	0	0	0.18416	1	7721	7721		63.534	29.361	1	2915400			41307	7254	27516	27628	41848	41848					0.05442347832035921
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;HBA1|p.A131T|1|0.07|ENSG00000206172|chr16:177373-177373|G/A|missense_variant	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.265869140625	2	461.266207	920.517862	0.10875	5.0164E-05	-0.71321	-0.00032898	-0.60445	-0.00027881	461.2658405077537	25.977	0.22631	25.977	25.886	26.112	0					12	5	3	0	0	0	0.076532	1	8894	8894		85.862	36.42	1	1353900			41308	7254	27516	27628	41849	41849					0.05442347832035921
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;HBA1|p.A131T|1|0.07|ENSG00000206172|chr16:177373-177373|G/A|missense_variant	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2657470703125	2	461.266207	920.517862	-0.15004	-6.921E-05	-0.24222	-0.00011173	-0.39227	-0.00018094	461.26612851790105	25.943	0.83917	25.943	25.755	26.594	0					34	15	5	0	0	0	0.029571	1	9211	9211		109.44	47.331	1	24856000			41309	7254	27516	27628	41850	41850					0.05442347832035921
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;HBA1|p.A131T|1|0.07|ENSG00000206172|chr16:177373-177373|G/A|missense_variant	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2659606933594	2	461.266207	920.517862	-0.1544	-7.1219E-05	-0.29002	-0.00013378	-0.44442	-0.000205	461.26606033294047	25.781	0.32492	25.781	25.642	25.967	0					14	5	4	0	0	0	0.035106	1	8238	8238		104.01	54.572	1	2411500			41310	7254	27516	27628	41851	41851					0.05442347832035921
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;HBA1|p.A131T|1|0.07|ENSG00000206172|chr16:177373-177373|G/A|missense_variant	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.26580810546875	2	461.266207	920.517862	-0.46082	-0.00021256	-0.31391	-0.0001448	-0.77473	-0.00035736	461.26606552824387	25.907	0.75056	25.907	25.718	26.469	0					32	13	4	0	0	0	0.026848	1	9072	9072		112.11	50	1	26733000			41311	7254	27516	27628	41852	41852					0.05442347832035921
SVSVSLPSVF	10	Unmodified	_SVSVSLPSVF_					0	0	0		ENST00000491729.1_1_21:47608607-47611005:-|nuORF	ENST00000491729.1_1_21:47608607-47611005:-|nuORF	ENST00000491729.1_1_21:47608607-47611005:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.28173828125	2	511.281857	1020.54916	-0.0030795	-1.5745E-06	0.14875	7.6054E-05	0.14567	7.448E-05	511.2820329052608	39.936	0.16805	39.936	39.844	40.012	0					11	6	2	0	0	0	0.58896	1	15199	15199		35.618	0	1	128370			41312	10076	27517	27629	41853	41853					0.03970920866152028
SVTAGITEK	9	Unmodified	_SVTAGITEK_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2503662109375	2	453.250557	904.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.987	1	24.987	24.487	25.487	0								0	0	0	0.21054	1	7877	7877		49.442	3.4896	1		+		41313	13291	27518	27630	41854	41854					0.030497747979552514
SVTDAVALRV	10	Unmodified	_SVTDAVALRV_					0	0	0		nc|ENSG00000172500|O43427|FIBP;FIBP|p.R38H|1|0.5|ENSG00000172500|chr11:65888105-65888105|C/T|missense_variant;ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;FIBP|p.K190Nfs*5|1|0.42|ENSG00000172500|chr11:65885606-65885606|T/-|frameshift_variant;ENSG00000172500|ENST00000357519|FIBP	nc|ENSG00000172500|O43427|FIBP	nc|ENSG00000172500|O43427|FIBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.79833984375	2	515.798206	1029.58186	1.3144	0.00067794	-1.5167	-0.00078233	-0.20238	-0.00010438	515.7975019265497	27.471	0.10829	27.471	27.401	27.509	0					5	3	2	0	0	0	0.58896	1	8480	8480		35.618	0	1	65006			41314	11647	27519	27631	41855	41855					0.06825127988986424
SVTEPSQGR	9	Unmodified	_SVTEPSQGR_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7393493652344	2	480.740888	959.467223	0.51643	0.00024827	-1.9936	-0.0009584	-1.4772	-0.00071013	480.73979595614065	16.744	0.25396	16.744	16.576	16.83	0					16	6	3	0	0	0	0.087861	1	4577	4577		82.241	13.454	1	1545800			41315	1093	27520	27632	41856	41856					-0.014131814929442044
SVTEPSQGR	9	Unmodified	_SVTEPSQGR_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7403564453125	2	480.740888	959.467223	3.4639	0.0016653	-3.6192	-0.0017399	-0.15526	-7.4642E-05	480.73926761572386	16.479	0.20261	16.479	16.334	16.537	0					10	6	2	0	0	0	0.28897	1	3957	3957		51.193	3.5354	1	100240			41316	1093	27520	27632	41857	41857					-0.014131814929442044
SVTEPSQGR	9	Unmodified	_SVTEPSQGR_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.74053955078125	2	480.740888	959.467223	-0.10897	-5.2384E-05	-0.34021	-0.00016355	-0.44917	-0.00021594	480.7407213779093	16.688	0.30484	16.688	16.48	16.785	0					17	6	4	0	0	0	0.1424	1	4804	4804		69.628	9.5094	1	1115600			41317	1093	27520	27632	41858	41858					-0.014131814929442044
SVTEPSQGR	9	Unmodified	_SVTEPSQGR_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7406311035156	2	480.740888	959.467223	-0.63723	-0.00030634	-0.036287	-1.7445E-05	-0.67352	-0.00032379	480.7408767599537	16.658	0.31297	16.658	16.499	16.812	0					18	6	4	0	0	0	0.07136	1	4643	4643		87.696	21.267	1	1495100			41318	1093	27520	27632	41859	41859					-0.014131814929442044
SVTGHTSQK	9	Unmodified	_SVTGHTSQK_					0	0	0		BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant;BIRC6|p.I2261Yfs*13|1|0.3|ENSG00000115760|chr2:32476268-32476268|A/-|frameshift_variant;BIRC6|p.I914Yfs*2|1|0.07|ENSG00000115760|chr2:32416027-32416027|A/-|frameshift_variant;BIRC6|p.T1339Qfs*21|1|0.44|ENSG00000115760|chr2:32442131-32442131|A/-|frameshift_variant;BIRC6|p.R1406Dfs*3|1|0.35|ENSG00000115760|chr2:32442431-32442431|C/-|frameshift_variant;BIRC6|p.P1736Qfs*17|1|0.37|ENSG00000115760|chr2:32464770-32464770|C/-|frameshift_variant;BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.74365234375	2	472.743431	943.472308	0.59134	0.00027955	-0.93996	-0.00044436	-0.34861	-0.0001648	472.7428525459694	11.58	0.081812	11.58	11.506	11.588	0					4	2	2	0	0	0	0.048471	1	2401	2401		95.815	37.033	1	74282			41319	301;300	27521	27633	41860	41860					-0.001688776303353734
SVTGKVGTDI	10	Unmodified	_SVTGKVGTDI_					0	0	0		ENST00000424976.1_1_1:187532898-187533042:+|nuORF	ENST00000424976.1_1_1:187532898-187533042:+|nuORF	ENST00000424976.1_1_1:187532898-187533042:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7686462402344	2	488.769114	975.523675	0.78517	0.00038376	-1.402	-0.00068528	-0.61688	-0.00030151	488.7683820536727	23.98	0.46309	23.98	23.716	24.179	0					25	9	4	0	0	0	0.4287	1	8195	8195		53.089	3.5529	1	1208300			41320	9426	27522	27634	41861	41861					0.034934463437252816
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.2295227050781	2	418.229625	834.444697	0.45737	0.00019129	-0.81213	-0.00033966	-0.35476	-0.00014837	418.22925013993444	16.342	0.44066	16.342	16.208	16.649	0					21	10	4	0	0	0	0.0030642	1	4394	4394		168.26	77.889	1	4239800			41321	1519	27523	27635	41862	41862					0.020852191094263617
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	418.2298889160156	2	418.229625	834.444697	-1.3627	-0.00056993	1.6793	0.00070235	0.31661	0.00013242	418.2302752410234	16.017	0.1222	16.017	15.982	16.104	0					6	4	2	0	0	0	0.36892	1	3765	3765		44.377	3.599	1	117920			41322	1519	27523	27635	41863	41863					0.020852191094263617
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.2296142578125	2	418.229625	834.444697	0.10077	4.2147E-05	-0.25019	-0.00010464	-0.14942	-6.2491E-05	418.2295046669116	16.048	0.30773	16.048	15.977	16.285	0					21	9	4	0	0	0	0.047855	1	3710	3710		96.034	24.156	1	3229600			41323	1519	27523	27635	41864	41864					0.020852191094263617
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.2294616699219	2	418.229625	834.444697	-0.049394	-2.0658E-05	-0.33139	-0.0001386	-0.38079	-0.00015926	418.229447074004	16.057	0.33906	16.057	15.97	16.309	0					22	10	4	0	0	0	0.021015	1	3722	3722		120.31	27.11	1	897830			41324	1519	27523	27635	41865	41865					0.020852191094263617
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	418.2294006347656	2	418.229625	834.444697	-0.29142	-0.00012188	-0.29542	-0.00012355	-0.58684	-0.00024543	418.2295773860791	16.259	0.71053	16.259	16.149	16.859	0					33	14	4	0	0	0	0.0088974	1	4449	4449		143.37	50.178	1	24299000			41325	1519	27523	27635	41866	41866					0.020852191094263617
SVTGVTASK	9	Unmodified	_SVTGVTASK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.2373962402344	2	425.23745	848.460347	0.32263	0.0001372	-0.36179	-0.00015385	-0.03916	-1.6652E-05	425.237264255802	17.918	0.22919	17.918	17.746	17.975	0					8	5	2	0	0	0	0.24334	1	5096	5096		56.434	6.9922	1	199510			41326	5033	27524	27636	41867	41867					0.030055056264700397
SVTGVTASK	9	Unmodified	_SVTGVTASK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.23724365234375	2	425.23745	848.460347	0.9249	0.0003933	-1.144	-0.00048646	-0.21906	-9.3153E-05	425.2369588216654	17.902	0.35347	17.902	17.696	18.05	0					20	8	4	0	0	0	0.22823	1	5090	5090		58.246	5.3095	1	2554700			41327	5033	27524	27636	41868	41868					0.030055056264700397
SVTGVTASK	9	Unmodified	_SVTGVTASK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2372741699219	2	425.23745	848.460347	-0.36431	-0.00015492	-0.063744	-2.7106E-05	-0.42805	-0.00018202	425.23734388145573	17.862	0.32005	17.862	17.651	17.971	0					15	6	3	0	0	0	0.19952	1	5321	5321		61.691	1.573	1	2038300			41328	5033	27524	27636	41869	41869					0.030055056264700397
SVTGVTASK	9	Unmodified	_SVTGVTASK_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.23699951171875	2	425.23745	848.460347	-0.37855	-0.00016097	-0.013814	-5.8741E-06	-0.39236	-0.00016685	425.2373818057622	17.843	0.31542	17.843	17.632	17.947	0					15	6	3	0	0	0	0.12278	1	5163	5163		74.165	14.047	1	2255200			41329	5033	27524	27636	41870	41870					0.030055056264700397
SVTHLHSI	8	Unmodified	_SVTHLHSI_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.2453918457031	2	447.245609	892.476666	-1.1714	-0.00052389	-0.35004	-0.00015655	-1.5214	-0.00068045	447.245464685636	28.962	0.40715	28.962	28.88	29.287	0					24	16	2	0	0	0	0.65276	1	9419	9419		40.573	5.3719	1	91555			41330	4012	27525	27637	41871	41871					0.026126315832470937
SVTHSPEI	8	Unmodified	_SVTHSPEI_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2216491699219	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.047	1	41.047	40.547	41.547	0								0	0	0	1.7419	1	15611	15611		28.254	0.37203	1				41331	7593	27526	27638	41872	41872					-0.01043067407624676
SVTHSVPV	8	Unmodified	_SVTHSVPV_					0	0	0		ENST00000379598.9_1_20:3786205-3786352:+|nuORF	ENST00000379598.9_1_20:3786205-3786352:+|nuORF	ENST00000379598.9_1_20:3786205-3786352:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.2267150878906	2	413.226885	824.439217	1.0257	0.00042386	-1.2412	-0.00051289	-0.21545	-8.9028E-05	413.22633732852944	23.964	0.23103	23.964	23.832	24.063	0					15	5	4	0	0	0	0.68754	1	8000	8000		35.201	1.6851	1	1237300			41332	9083	27527	27639	41873	41873					0.019975403176204054
SVTHSVPV	8	Unmodified	_SVTHSVPV_					0	0	0		ENST00000379598.9_1_20:3786205-3786352:+|nuORF	ENST00000379598.9_1_20:3786205-3786352:+|nuORF	ENST00000379598.9_1_20:3786205-3786352:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.22698974609375	2	413.226885	824.439217	-0.072899	-3.0124E-05	-0.28031	-0.00011583	-0.35321	-0.00014596	413.226801461205	23.717	0.15901	23.717	23.601	23.76	0					7	4	2	0	0	0	0.75243	1	7276	7276		26.796	0.10319	1	212550			41333	9083	27527	27639	41874	41874					0.019975403176204054
SVTIIYHTR	9	Unmodified	_SVTIIYHTR_					0	0	0			REV__sp|Q6SWC8|UL01_HCMVMGlycoproteinUL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL1PE=3SV=1	REV__sp|Q6SWC8|UL01_HCMVMGlycoproteinUL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL1PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.306640625	2	545.306198	1088.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.979	1	25.979	25.479	26.479	0								0	0	0	0.30504	1	8113	8113		34.173	6.2903	1		+		41334	21592	27528	27640	41875	41875					0.057088342258794
SVTKPEKEK	9	Unmodified	_SVTKPEKEK_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2980346679688	2	523.298039	1044.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.067	1	30.067	29.567	30.567	0								0	0	0	0.31785	1	10193	10193		31.634	0	1				41335	7400	27529	27641	41876	41876					0.061017082691250835
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2867736816406	2	481.287474	960.560395	-1.3504	-0.00064995	0.61229	0.00029469	-0.73814	-0.00035526	481.2877630029866	16.349	0.077953	16.349	16.295	16.373	0					6	3	2	0	0	0	0.10915	1	3899	3899		77.318	33.201	1	134140			41336	7186	27530	27642	41877	41877					0.07853742960276122
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2872314453125	2	481.287474	960.560395	0.68398	0.00032919	-1.2497	-0.00060148	-0.56574	-0.00027228	481.2868803690663	16.571	0.16638	16.571	16.463	16.63	0					5	3	2	0	0	0	0.15163	1	4772	4772		67.494	21.521	1	1146300			41337	7186	27530	27642	41878	41878					0.07853742960276122
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2874755859375	2	481.287474	960.560395	-0.29303	-0.00014103	0.0073143	3.5203E-06	-0.28571	-0.00013751	481.2876560427541	16.38	0.11895	16.38	16.296	16.415	0					5	3	2	0	0	0	0.15163	1	3877	3877		67.494	21.521	1	138920			41338	7186	27530	27642	41879	41879					0.07853742960276122
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.287109375	2	481.287474	960.560395	-0.62964	-0.00030304	0.15656	7.5348E-05	-0.47308	-0.00022769	481.2874932661254	16.557	0.16699	16.557	16.499	16.666	0					7	3	3	0	0	0	0.02429	1	4616	4616		114.89	38.048	1	531520			41339	7186	27530	27642	41880	41880					0.07853742960276122
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.28717041015625	2	481.287474	960.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.616	1	16.616	16.116	17.116	0								0	0	0	0.088368	1	4634	4634		75.043	16.261	1				41340	7186	27530	27642	41881	41881					0.07853742960276122
SVTNDVIQL	9	Unmodified	_SVTNDVIQL_					0	0	0			REV__ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant	REV__ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.76605224609375	2	494.769114	987.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.162	1	33.162	32.662	33.662	0								0	0	0	0.23445	1	11608	11608		45.972	1.4412	1		+		41341	16319	27531	27643	41882	41882					0.029414463437205995
SVTNKITKAR	10	Unmodified	_SVTNKITKAR_					0	0	0			REV__nc|ENSG00000168280|O60282-2|KIF5C	REV__nc|ENSG00000168280|O60282-2|KIF5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.228759765625	3	373.227779	1116.66151	3.2208	0.0012021	0.83012	0.00030982	4.0509	0.0015119	373.2276174469097	16.867	0.30951	16.867	16.763	17.073	0					9	6	2	0	0	0	0.67098	1	4771	4771		18.531	3.8374	1	435660	+		41342	16248	27532	27644	41883	41883					0.10784194662983282
SVTNLVTLK	9	Unmodified	_SVTNLVTLK_					0	0	0			REV__SH3GL1|p.M70V|1|0.12|ENSG00000141985|chr19:4365605-4365605|T/C|missense_variant	REV__SH3GL1|p.M70V|1|0.12|ENSG00000141985|chr19:4365605-4365605|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.53411865234375	3	325.534209	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.139	1	22.139	21.639	22.639	0								0	0	0	0.3368	1	6213	6213		28.081	7.2443	1		+		41343	21513	27533	27645	41884	41884					0.09294913620090028
SVTPDTPATM	10	Unmodified	_SVTPDTPATM_					0	0	0		CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant;CMYA5|p.F390L|1|0.29|ENSG00000164309|chr5:79729933-79729933|T/C|missense_variant;CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant;CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant;CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENSG00000164309|ENST00000446378|CMYA5	CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant;CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant	CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.23944091796875	2	510.239332	1018.46411	0.30432	0.00015527	0.43584	0.00022238	0.74016	0.00037766	510.23954848480514	31.58	0.25016	31.58	31.485	31.736	0					8	5	2	0	0	0	0.52707	1	11935	11935		42.396	4.5846	1	115560			41344	567;566	27534	27646	41885	41885					-0.044381926619848855
SVTPTGSKG	9	Unmodified	_SVTPTGSKG_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.22174072265625	2	417.2218	832.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.54	1	14.54	14.04	15.04	0								0	0	0	0.3428	1	3563	3563		26.693	1.1189	1		+		41345	17527	27535	27647	41886	41886					0.0061293259238937026
SVTQASKEL	9	Unmodified	_SVTQASKEL_					0	0	0		ENST00000415992.5_1_9:139704261-139704318:+|nuORF	ENST00000415992.5_1_9:139704261-139704318:+|nuORF	ENST00000415992.5_1_9:139704261-139704318:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7609558105469	2	481.761289	961.508025	-0.11265	-5.4272E-05	-0.18849	-9.0806E-05	-0.30114	-0.00014508	481.7612033783369	25.994	0.30684	25.994	25.818	26.125	0					14	6	3	0	0	0	0.037924	1	8897	8897		101.25	4.5876	1	1650100			41346	9352	27536	27648	41887	41887					0.025731598266588662
SVTRVVVHK	9	Unmodified	_SVTRVVVHK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000079819|O43491-2|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.21356201171875	3	342.213581	1023.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.034	1	17.034	16.534	17.534	0								0	0	0	0.36266	1	4988	4988		22.58	5.1116	1				41347	1630;9658	27537	27649	41888	41888					0.10804844325423346
SVTSGKYKD	9	Unmodified	_SVTSGKYKD_					0	0	0		tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7534484863281	2	492.753464	983.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.15	1	23.15	22.65	23.65	0								0	0	0	0.3119	1	7937	7937		32.812	1.2826	1				41348	22562	27538	27650	41889	41889					-3.1266903874893615E-05
SVTSLTPR	8	Unmodified	_SVTSLTPR_					0	0	0			REV__ENST00000548303.1_1_12:53819264-53819576:+|nuORF	REV__ENST00000548303.1_1_12:53819264-53819576:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.745361328125	2	430.745442	859.476331	-0.34383	-0.0001481	-0.081286	-3.5013E-05	-0.42512	-0.00018312	430.7454244676355	28.927	0.14413	28.927	28.836	28.981	0					6	3	2	0	0	0	0.60719	1	9678	9678		47.916	5.5195	1	115640	+		41349	20182	27539	27651	41890	41890					0.040972118633817445
SVTSPIKMK	9	Unmodified	_SVTSPIKMK_					0	0	0		nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.78619384765625	2	495.786253	989.557952	-1.4937	-0.00074057	1.5727	0.00077973	0.078999	3.9166E-05	495.78720948930726	24.04	0.13091	24.04	23.923	24.053	0					8	4	2	0	0	0	0.19605	1	7296	7296		62.107	17.73	1	75215			41350	1673	27540	27652	41891	41891					0.06275571230980859
SVTSPIKMK	9	Unmodified	_SVTSPIKMK_					0	0	0		nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7861633300781	2	495.786253	989.557952	-0.76436	-0.00037896	-0.026221	-1.3E-05	-0.79058	-0.00039196	495.7866608366569	24.195	0.31465	24.195	24.029	24.343	0					15	6	3	0	0	0	0.25716	1	8444	8444		54.776	5.3348	1	344510			41351	1673	27540	27652	41892	41892					0.06275571230980859
SVTSSTHEK	9	Unmodified	_SVTSSTHEK_					0	0	0		POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant;POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant	POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.240478515625	2	488.240721	974.466889	-0.70742	-0.00034539	0.38164	0.00018633	-0.32577	-0.00015906	488.24092628399393	12.463	0.21725	12.463	12.293	12.51	0					6	5	2	0	0	0	0.063823	1	2818	2818		90.37	21.583	1	969450			41352	1067	27541	27653	41893	41893					-0.021366012128055445
SVTTDRIL	8	Unmodified	_SVTTDRIL_					0	0	0		OR10P1|p.V274I|1|0.38|ENSG00000175398|chr12:55637711-55637711|G/A|missense_variant	OR10P1|p.V274I|1|0.38|ENSG00000175398|chr12:55637711-55637711|G/A|missense_variant	OR10P1|p.V274I|1|0.38|ENSG00000175398|chr12:55637711-55637711|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.75848388671875	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.434	1	21.434	20.934	21.934	0								0	0	0	1.7419	1	6811	6811		58.782	16.386	1				41353	11873	27542	27654	41894	41894					0.04693481034871638
SVTTSATE	8	Unmodified	_SVTTSATE_					0	0	0		CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant	CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant	CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.190185546875	2	398.190165	794.365778	0.42256	0.00016826	-0.59339	-0.00023628	-0.17083	-6.8025E-05	398.1899820331498	18.385	0.16717	18.385	18.275	18.443	0					7	3	3	0	0	0	0.79719	1	5647	5647		18.324	18.324	1	359880			41354	550	27543	27655	41895	41895					-0.03963052915514709
SVTTSLAVK	9	Unmodified	_SVTTSLAVK_					0	0	0			REV__CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	REV__CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7552490234375	2	453.26875	904.522947	-0.0074407	-3.3727E-06	-0.41306	-0.00018723	-0.4205	-0.0001906	453.2685074575471	29.239	0.65972	29.239	29.125	29.785	0					57	24	5	0	0	0	0.59802	1	9171	9171		21.96	0	1	7782900	+		41355	12333	27544	27656	41896	41896					0.06686651694667489
SVTVRNGGSP	10	Unmodified	_SVTVRNGGSP_					0	0	0		CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.25799560546875	2	487.256705	972.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.051	1	40.051	39.551	40.551	0								0	0	0	0.37602	1	15874	15874		37.812	0.65241	1				41356	715	27545	27657	41897	41897					0.011508112610044918
SVVASGSSFGR	11	Unmodified	_SVVASGSSFGR_					0	0	0			REV__KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant	REV__KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.268310546875	2	527.269813	1052.52507	0.51842	0.00027335	-3.1365	-0.0016538	-2.6181	-0.0013804	527.2682208500823	14.249	0.074404	14.249	14.216	14.29	0					4	2	2	0	0	0	0.80429	1	3058	3058		14.137	0	1	136300	+	+	41357	12595	27546	27658	41898	41898					0.0009108043250307674
SVVAVLVYK	9	Unmodified	_SVVAVLVYK_					0	0	0		nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.30535888671875	2	489.305136	976.595718	0.78121	0.00038225	-0.72738	-0.00035591	0.053829	2.6339E-05	489.3046398465911	38.925	0.14507	38.925	38.87	39.015	0					8	5	2	0	0	0	0.13267	1	14800	14800		71.877	33.071	1	87059			41358	4121	27547	27659	41899	41899					0.1064840548808661
SVVAVLVYK	9	Unmodified	_SVVAVLVYK_					0	0	0		nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.3047790527344	2	489.305136	976.595718	0.60851	0.00029775	-1.0986	-0.00053753	-0.49005	-0.00023979	489.30462921664736	38.894	0.26766	38.894	38.817	39.084	0					13	9	2	0	0	0	0.028876	1	15296	15296		110.12	49.148	1	186170			41359	4121	27547	27659	41900	41900					0.1064840548808661
SVVAVLVYK	9	Unmodified	_SVVAVLVYK_					0	0	0		nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-3|TLR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.3048095703125	2	489.305136	976.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.874	1	38.874	38.374	39.374	0								0	0	0	0.31838	1	15319	15319		31.53	2.3803	1				41360	4121	27547	27659	41901	41901					0.1064840548808661
SVVAVLVYK	9	Unmodified	_SVVAVLVYK_					0	0	0		nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.3057556152344	2	489.305136	976.595718	0.77687	0.00038013	-0.11704	-5.7266E-05	0.65984	0.00032286	489.30489483383883	38.831	0.2528	38.831	38.729	38.981	0					9	5	2	0	0	0	0.037569	1	15310	15310		101.6	46.097	1	307300			41361	4121	27547	27659	41902	41902					0.1064840548808661
SVVDNVAKK	9	Unmodified	_SVVDNVAKK_					0	0	0			REV__ENST00000483082.1_1_1:43637412-43637789:-|nuORF	REV__ENST00000483082.1_1_1:43637412-43637789:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.27935791015625	2	480.279649	958.544745	0.048942	2.3506E-05	-0.20792	-9.9858E-05	-0.15897	-7.6352E-05	480.2794557904234	16.601	0.10343	16.601	16.529	16.632	0					7	3	3	0	0	0	0.10915	1	3801	3801		77.318	5.9397	1	379580	+		41362	19618	27548	27660	41903	41903					0.06381456443239131
SVVEHRLR	8	Unmodified	_SVVEHRLR_					0	0	0		ENST00000571392.1_1_16:72050863-72057137:+|nuORF;ENST00000573922.5_1_16:72046155-72057137:+|nuORF;ENST00000572003.5_1_16:72048341-72054317:+|nuORF;ENSG00000102967|ENST00000219240|DHODH	ENST00000571392.1_1_16:72050863-72057137:+|nuORF	ENST00000571392.1_1_16:72050863-72057137:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2919921875	2	498.290882	994.567212	0.17563	8.7516E-05	2.3581	0.001175	2.5337	0.0012625	498.2917746329572	31.711	0.15758	31.711	31.632	31.789	0					6	4	2	0	0	0	0.65148	1	10941	10941		40.778	5.1599	1	85339			41363	10802	27549	27661	41904	41904					0.06971100631517402
SVVEVMGQL	9	Unmodified	_SVVEVMGQL_					0	0	0			REV__RYR3|p.A2740S|1|0.29|ENSG00000198838|chr15:33749997-33749997|G/T|missense_variant	REV__RYR3|p.A2740S|1|0.29|ENSG00000198838|chr15:33749997-33749997|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.25537109375	2	481.254785	960.495018	-0.10657	-5.1288E-05	0.88753	0.00042713	0.78096	0.00037584	481.2556523152894	31.306	0.85644	31.306	30.782	31.638	0					37	19	4	0	0	0	0.17854	1	11750	11750		64.207	0	1	267640	+		41364	21484	27550	27662	41905	41905					0.013190054429401243
SVVGGLAVGK	10	Unmodified	_SVVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.77130126953125	2	443.77146	885.528367	0.23383	0.00010377	-0.66864	-0.00029672	-0.43481	-0.00019296	443.77112808331736	29.782	0.11333	29.782	29.74	29.853	0					8	5	2	0	0	0	0.47859	1	9432	9432		47.657	1.7054	1	69015			41365	2227	27551	27663	41906	41906					0.08102375277144347
SVVGGLAVGK	10	Unmodified	_SVVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7712707519531	2	443.77146	885.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.076	1	30.076	29.576	30.576	0								0	0	0	0.29806	1	10807	10807		51.193	1.1682	1				41366	2227	27551	27663	41907	41907					0.08102375277144347
SVVGGLAVGK	10	Unmodified	_SVVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.771240234375	2	443.77146	885.528367	0.53042	0.00023538	-1.0643	-0.00047231	-0.5339	-0.00023693	443.77097568735513	30.05	0.28554	30.05	29.949	30.235	0					12	6	3	0	0	0	0.31613	1	11207	11207		65.465	14.273	1	766750			41367	2227	27551	27663	41908	41908					0.08102375277144347
SVVGGLAVGK	10	Unmodified	_SVVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.7713317871094	2	443.77146	885.528367	-0.49641	-0.00022029	0.2183	9.6875E-05	-0.27811	-0.00012342	443.77152241306106	29.842	0.21386	29.842	29.726	29.94	0					9	6	2	0	0	0	0.43008	1	10085	10085		52.937	3.4952	1	81984			41368	2227	27551	27663	41909	41909					0.08102375277144347
SVVGNFQEK	9	Unmodified	_SVVGNFQEK_					0	0	0		ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2611083984375	2	504.261456	1006.50836	-0.83714	-0.00042214	-0.44314	-0.00022346	-1.2803	-0.0006456	504.26169308893896	26.842	0.25682	26.842	26.767	27.024	0					12	9	2	0	0	0	0.2546	1	8504	8504		56.434	0	1	310670			41369	6790	27552	27664	41910	41910					0.005365795465195333
SVVGNFQEK	9	Unmodified	_SVVGNFQEK_					0	0	0		ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.26129150390625	2	504.261456	1006.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.134	1	27.134	26.634	27.634	0								0	0	0	0.14179	1	9796	9796		54.722	3.5297	1				41370	6790	27552	27664	41911	41911					0.005365795465195333
SVVGNFQEK	9	Unmodified	_SVVGNFQEK_					0	0	0		ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2614440917969	2	504.261456	1006.50836	0.12027	6.0646E-05	-0.82786	-0.00041746	-0.7076	-0.00035681	504.2610600175284	26.909	0.16745	26.909	26.82	26.988	0					9	4	3	0	0	0	0.36584	1	8755	8755		45.022	9.8215	1	252980			41371	6790	27552	27664	41912	41912					0.005365795465195333
SVVGNFQEK	9	Unmodified	_SVVGNFQEK_					0	0	0		ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.26123046875	2	504.261456	1006.50836	1.2058	0.00060804	-1.8024	-0.00090889	-0.59662	-0.00030085	504.26053305555484	27.044	0.3196	27.044	26.936	27.255	0					17	6	4	0	0	0	0.24928	1	9642	9642		56.632	17.611	1	1860500			41372	6790	27552	27664	41913	41913					0.005365795465195333
SVVGNFQEK	9	Unmodified	_SVVGNFQEK_					0	0	0		ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	ENSG00000180061|ENST00000326652|TMEM150B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2611999511719	2	504.261456	1006.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.102	1	27.102	26.602	27.602	0								0	0	0	0.068244	1	9661	9661		74.165	15.383	1				41373	6790	27552	27664	41914	41914					0.005365795465195333
SVVGPVAAGPI	11	Unmodified	_SVVGPVAAGPI_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.8587646484375	3	322.858804	965.554582	0.53524	0.00017281	-0.45691	-0.00014752	0.07833	2.529E-05	322.8586211582575	20.603	0.14507	20.603	20.51	20.655	0					9	3	3	0	0	0	0.7098	1	6432	6432		23.378	6.6605	1	1079700	+		41374	13027	27553	27665	41915	41915					0.07042644448608826
SVVGRVNHK	9	Unmodified	_SVVGRVNHK_					0	0	0			REV__ENST00000463866.1_1_2:201736120-201746236:-|nuORF	REV__ENST00000463866.1_1_2:201736120-201746236:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2922058105469	2	498.290882	994.567212	3.3838	0.0016861	-0.15908	-7.927E-05	3.2247	0.0016068	498.29059858909443	31.693	0.1455	31.693	31.635	31.78	0					7	5	2	0	0	0	0.48389	1	10530	10530		34.173	2.2177	1	66589	+		41375	17681	27554	27666	41916	41916					0.06971100631517402
SVVHRELKI	9	Unmodified	_SVVHRELKI_					0	0	0			REV__nc|ENSG00000161405|Q9UKT9-14|IKZF3	REV__nc|ENSG00000161405|Q9UKT9-14|IKZF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.8890075683594	3	360.888986	1079.64513	0.49064	0.00017707	-0.54083	-0.00019518	-0.050194	-1.8114E-05	360.88879655849723	26.01	0.65918	26.01	25.901	26.56	0					29	13	4	0	0	0	0.21263	1	9271	9271		60.118	3.6845	1	550100	+		41376	15779	27555	27667	41917	41917					0.10849113496897189
SVVIANIVVG	10	Unmodified	_SVVIANIVVG_					0	0	0		ENST00000370689.6_1_1:84701367-84701451:+|nuORF	ENST00000370689.6_1_1:84701367-84701451:+|nuORF	ENST00000370689.6_1_1:84701367-84701451:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.79949951171875	2	485.800217	969.585882	-1.2388	-0.00060179	1.0018	0.00048666	-0.23699	-0.00011513	485.8007021320062	39.678	0.30949	39.678	39.578	39.887	0					37	17	3	0	0	0	0.56931	1	13310	13310		37.812	0	1	196940			41377	8958	27556	27668	41918	41918					0.09987217482716915
SVVISWHI	8	Unmodified	_SVVISWHI_					0	0	0		SELL|p.W36Gfs*26|1|0.06|ENSG00000188404|chr1:169710455-169710455|C/-|frameshift_variant	SELL|p.W36Gfs*26|1|0.06|ENSG00000188404|chr1:169710455-169710455|C/-|frameshift_variant	SELL|p.W36Gfs*26|1|0.06|ENSG00000188404|chr1:169710455-169710455|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7652893066406	2	470.766178	939.517802	-0.61201	-0.00028811	0.0083515	3.9316E-06	-0.60366	-0.00028418	470.7660441111076	39.411	0.25925	39.411	39.245	39.504	0					17	9	2	0	0	0	0.68754	1	14958	14958		35.201	0	1	87356			41378	22382	27557	27669	41919	41919					0.04562392622710831
SVVKITSKK	9	Unmodified	_SVVKITSKK_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.3216247558594	2	495.321317	988.628081	-0.40059	-0.00019842	0.66735	0.00033055	0.26676	0.00013213	495.3216553811365	16.104	0.1446	16.104	16.049	16.194	0					7	3	3	0	0	0	0.024086	1	4302	4302		109.44	39.811	1	637730			41379	1171	27558	27670	41920	41920					0.13331192891075716
SVVKITSKK	9	Unmodified	_SVVKITSKK_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.3212585449219	2	495.321317	988.628081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.818	1	15.818	15.318	16.318	0								0	0	0	0.24364	1	3680	3680		45.022	3.5956	1				41380	1171	27558	27670	41921	41921					0.13331192891075716
SVVKITSKK	9	Unmodified	_SVVKITSKK_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.3214111328125	2	495.321317	988.628081	-0.75989	-0.00037639	0.69999	0.00034672	-0.059896	-2.9668E-05	495.3217066759653	16.055	0.11689	16.055	15.996	16.112	0					4	2	2	0	0	0	0.024086	1	4526	4526		109.44	58.246	1	375460			41381	1171	27558	27670	41922	41922					0.13331192891075716
SVVKKSLPK	9	Unmodified	_SVVKKSLPK_					0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1	REV__ENSG00000115504|ENST00000431489|EHBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.2183837890625	3	329.218332	984.633166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.631	1	33.631	33.131	34.131	0								0	0	0	0.39802	1	11300	11300		12.812	5.6184	1		+		41382	14113	27559	27671	41923	41923					0.14023496753702602
SVVLAFGNL	9	Unmodified	_SVVLAFGNL_					0	0	0			REV__AHRR|p.S281Lfs*64|1|0.44|ENSG00000063438|chr5:427922-427923|-/C|frameshift_variant	REV__AHRR|p.S281Lfs*64|1|0.44|ENSG00000063438|chr5:427922-427923|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2648620605469	2	460.26601	918.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.478	1	25.478	24.978	25.978	0								0	0	0	0.30504	1	8107	8107		34.173	3.8548	1		+		41383	12121	27560	27672	41924	41924					0.054949729028635375
SVVLALRSY	9	Unmodified	_SVVLALRSY_					0	0	0		nc|ENSG00000140832|Q96A59-2|MARVELD3	nc|ENSG00000140832|Q96A59-2|MARVELD3	nc|ENSG00000140832|Q96A59-2|MARVELD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53448486328125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.095	1	55.095	54.595	55.595	0								0	0	0	0.35899	1	19880	19880		17.468	0.99486	1				41384	11554	27561	27673	41925	41925					0.0781033333993264
SVVLGLSVLN	10	Unmodified	_SVVLGLSVLN_					0	0	0			REV__ENST00000566541.5_3_16:31886566-31901532:+|nuORF	REV__ENST00000566541.5_3_16:31886566-31901532:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.8052673339844	2	500.8055	999.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.655	1	43.655	43.155	44.155	0								0	0	0	0.40063	1	17477	17477		30.318	4.8675	1		+		41385	17057	27562	27674	41926	41926					0.09663200137129024
SVVNAPTPEA	10	Unmodified	_SVVNAPTPEA_					0	0	0		ENST00000506839.1_1_4:9987396-10020676:-|nuORF	ENST00000506839.1_1_4:9987396-10020676:-|nuORF	ENST00000506839.1_1_4:9987396-10020676:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7532958984375	2	492.753464	983.492375	-0.59643	-0.00029389	0.12887	6.3501E-05	-0.46756	-0.00023039	492.7536188833436	23.092	0.21393	23.092	23.038	23.252	0					5	4	2	0	0	0	0.60281	1	7794	7794		33.922	2.3918	1	183670			41386	10198	27563	27675	41927	41927					-3.126690376120678E-05
SVVNSFIEK	9	Unmodified	_SVVNSFIEK_					0	0	0		NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant;ENSG00000136159|ENST00000258662|NUDT15	NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant	NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.77972412109375	2	511.779482	1021.54441	1.0336	0.00052897	-1.9543	-0.0010001	-0.92067	-0.00047118	511.779044364933	34.828	0.35331	34.828	34.652	35.005	0					20	9	3	0	0	0	0.061298	1	13014	13014		91.265	22.781	1	416590			41387	4059	27564	27676	41928	41928					0.034500367233818
SVVNSFIEK	9	Unmodified	_SVVNSFIEK_					0	0	0		NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant;ENSG00000136159|ENST00000258662|NUDT15	NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant	NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7795104980469	2	511.779482	1021.54441	0.041938	2.1463E-05	-0.63057	-0.00032271	-0.58863	-0.00030125	511.77992439825925	34.794	0.36373	34.794	34.684	35.048	0					17	7	4	0	0	0	0.30841	1	13359	13359		49.536	1.8787	1	508980			41388	4059	27564	27676	41929	41929					0.034500367233818
SVVNSFIEK	9	Unmodified	_SVVNSFIEK_					0	0	0		NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant;ENSG00000136159|ENST00000258662|NUDT15	NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant	NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7796630859375	2	511.779482	1021.54441	1.41	0.00072161	-1.39	-0.00071135	0.020047	1.026E-05	511.7791357223293	34.775	0.45907	34.775	34.522	34.981	0					17	9	3	0	0	0	0.061298	1	13375	13375		91.265	14.419	1	648920			41389	4059	27564	27676	41930	41930					0.034500367233818
SVVPGRDKVQ	10	Unmodified	_SVVPGRDKVQ_					0	0	0			REV__ENST00000510054.1_1_4:185033764-185038938:-|nuORF	REV__ENST00000510054.1_1_4:185033764-185038938:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	362.20965576171875	3	362.208495	1083.60366	3.1209	0.0011304	0.31182	0.00011294	3.4327	0.0012434	362.20845053329793	39.144	0.37717	39.144	38.998	39.376	0					13	8	3	0	0	0	0.58189	1	15462	15462		36.447	2.2742	1	185340	+		41390	15980	27565	27677	41931	41931					0.06519932737569434
SVVPRFIN	8	Unmodified	_SVVPRFIN_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2714538574219	2	466.271627	930.528701	0.65285	0.0003044	-1.0924	-0.00050937	-0.43958	-0.00020496	466.27113899827646	35.825	1.0616	35.825	35.62	36.681	0					49	21	4	0	0	0	0.72381	1	14024	14024		30.504	0	1	11185000			41391	5771	27566	27678	41932	41932					0.06065794996993645
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE;nc|ENSG00000167280|Q8NFI3-2|ENGASE;ENGASE|p.T547Pfs*14|2|0.35|ENSG00000167280|chr17:79085275-79085275|C/-|frameshift_variant;ENGASE|p.T547Hfs*45|1|0.16|ENSG00000167280|chr17:79085274-79085275|-/C|frameshift_variant;ENGASE|p.S611Gfs*22|1|0.26|ENSG00000167280|chr17:79085943-79085950|CTGCCAGC/-|frameshift_variant;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2713928222656	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.565	1	21.565	21.065	22.065	0								0	0	0	0.26578	1	5956	5956		41.427	4.2675	1				41392	11630	27567	27679	41933	41933					0.05461169926184084
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE;nc|ENSG00000167280|Q8NFI3-2|ENGASE;ENGASE|p.T547Pfs*14|2|0.35|ENSG00000167280|chr17:79085275-79085275|C/-|frameshift_variant;ENGASE|p.T547Hfs*45|1|0.16|ENSG00000167280|chr17:79085274-79085275|-/C|frameshift_variant;ENGASE|p.S611Gfs*22|1|0.26|ENSG00000167280|chr17:79085943-79085950|CTGCCAGC/-|frameshift_variant;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.271484375	2	473.271824	944.529095	0.24746	0.00011712	-0.47712	-0.00022581	-0.22966	-0.00010869	473.2715097077386	21.872	0.23611	21.872	21.696	21.932	0					10	5	3	0	0	0	0.15558	1	7029	7029		66.962	15.769	1	1192800			41393	11630	27567	27679	41934	41934					0.05461169926184084
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE;nc|ENSG00000167280|Q8NFI3-2|ENGASE;ENGASE|p.T547Pfs*14|2|0.35|ENSG00000167280|chr17:79085275-79085275|C/-|frameshift_variant;ENGASE|p.T547Hfs*45|1|0.16|ENSG00000167280|chr17:79085274-79085275|-/C|frameshift_variant;ENGASE|p.S611Gfs*22|1|0.26|ENSG00000167280|chr17:79085943-79085950|CTGCCAGC/-|frameshift_variant;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.271484375	2	473.271824	944.529095	-0.12211	-5.7793E-05	-0.47432	-0.00022448	-0.59643	-0.00028227	473.27155640200175	21.901	0.41221	21.901	21.625	22.037	0					13	8	3	0	0	0	0.19891	1	7285	7285		61.765	1.8338	1	1728200			41394	11630	27567	27679	41935	41935					0.05461169926184084
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE;nc|ENSG00000167280|Q8NFI3-2|ENGASE;ENGASE|p.T547Pfs*14|2|0.35|ENSG00000167280|chr17:79085275-79085275|C/-|frameshift_variant;ENGASE|p.T547Hfs*45|1|0.16|ENSG00000167280|chr17:79085274-79085275|-/C|frameshift_variant;ENGASE|p.S611Gfs*22|1|0.26|ENSG00000167280|chr17:79085943-79085950|CTGCCAGC/-|frameshift_variant;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2713623046875	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.668	1	21.668	21.168	22.168	0								0	0	0	0.15687	1	6322	6322		58.23	5.2932	1				41395	11630	27567	27679	41936	41936					0.05461169926184084
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE;nc|ENSG00000167280|Q8NFI3-2|ENGASE;ENGASE|p.T547Pfs*14|2|0.35|ENSG00000167280|chr17:79085275-79085275|C/-|frameshift_variant;ENGASE|p.T547Hfs*45|1|0.16|ENSG00000167280|chr17:79085274-79085275|-/C|frameshift_variant;ENGASE|p.S611Gfs*22|1|0.26|ENSG00000167280|chr17:79085943-79085950|CTGCCAGC/-|frameshift_variant;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.27142333984375	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.824	1	21.824	21.324	22.324	0								0	0	0	0.18541	1	7163	7163		53.089	10.225	1				41396	11630	27567	27679	41937	41937					0.05461169926184084
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE;nc|ENSG00000167280|Q8NFI3-2|ENGASE;ENGASE|p.T547Pfs*14|2|0.35|ENSG00000167280|chr17:79085275-79085275|C/-|frameshift_variant;ENGASE|p.T547Hfs*45|1|0.16|ENSG00000167280|chr17:79085274-79085275|-/C|frameshift_variant;ENGASE|p.S611Gfs*22|1|0.26|ENSG00000167280|chr17:79085943-79085950|CTGCCAGC/-|frameshift_variant;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2716064453125	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.806	1	21.806	21.306	22.306	0								0	0	0	0.066158	1	7154	7154		81.525	14.031	1				41397	11630	27567	27679	41938	41938					0.05461169926184084
SVVQTLLQQ	9	Unmodified	_SVVQTLLQQ_					0	0	0		ENSG00000230989|ENST00000433866|HSBP1	ENSG00000230989|ENST00000433866|HSBP1	ENSG00000230989|ENST00000433866|HSBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2915344238281	2	508.292756	1014.57096	-0.47561	-0.00024175	-1.0805	-0.00054922	-1.5561	-0.00079097	508.29219970624905	16.359	0.085924	16.359	16.282	16.368	0					6	3	2	0	0	0	0.28897	1	3903	3903		51.193	5.2204	1	55477			41398	7890	27568	27680	41939	41939					0.06425725614712974
SVVRNVFDF	9	Unmodified	_SVVRNVFDF_					0	0	0		VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant;VWA8|p.G1575Efs*53|1|0.25|ENSG00000102763|chr13:41611729-41611729|C/-|frameshift_variant;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8;VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant;nc|ENSG00000102763|A3KMH1-2|VWA8	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7869262695312	2	541.785099	1081.55564	4.8614	0.0026338	-1.126	-0.00061007	3.7354	0.0020238	541.784397547584	25.779	0.21243	25.779	25.701	25.913	0					5	3	2	0	0	0	0.35021	1	8055	8055		45.972	5.3996	1	159640			41399	2188	27569	27681	41940	41940					0.018128588175159166
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2895202636719	2	451.289485	900.564418	0.00056294	2.5405E-07	0.6185	0.00027912	0.61907	0.00027938	451.28964990020444	38.884	0.094872	38.884	38.825	38.92	0					6	5	2	0	0	0	0.42902	1	12660	12660		39.253	7.298	1	50085			41400	11540	27570	27682	41941	41941					0.11015832453995245
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.29010009765625	2	451.289485	900.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.286	1	39.286	38.786	39.786	0								0	0	0	0.22284	1	14952	14952		47.657	20.964	1				41401	11540	27570	27682	41942	41942					0.11015832453995245
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2890930175781	2	451.289485	900.564418	0.65267	0.00029454	-1.3107	-0.0005915	-0.65803	-0.00029696	451.2888967241742	39.224	0.31097	39.224	39.131	39.442	0					19	10	3	0	0	0	0.1424	1	14906	14906		69.628	32.469	1	245100			41402	11540	27570	27682	41943	41943					0.11015832453995245
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.28955078125	2	451.289485	900.564418	-0.10752	-4.8521E-05	0.28779	0.00012988	0.18028	8.1357E-05	451.28959016070485	39.199	0.27192	39.199	39.113	39.384	0					12	9	2	0	0	0	0.07136	1	15389	15389		87.696	38.255	1	238600			41403	11540	27570	27682	41944	41944					0.11015832453995245
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.289794921875	2	451.289485	900.564418	-0.40655	-0.00018347	0.33446	0.00015094	-0.072082	-3.253E-05	451.2896180934459	39.132	0.28462	39.132	39.032	39.317	0					13	6	3	0	0	0	0.10915	1	15429	15429		77.318	22.541	1	399480			41404	11540	27570	27682	41945	41945					0.11015832453995245
SVVSSVTTK	9	Unmodified	_SVVSSVTTK_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;P2RX4|p.T223Qfs*13|1|0.34|ENSG00000135124|chr12:121228783-121228783|A/-|frameshift_variant;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.2579650878906	2	454.258382	906.502212	0.0039874	1.8113E-06	-0.73695	-0.00033477	-0.73296	-0.00033295	454.2581124138128	22.824	0.075434	22.824	22.781	22.857	0					4	2	2	0	0	0	0.1424	1	6522	6522		69.628	8.6557	1	54196			41405	3969	27571	27683	41946	41946					0.045220613150036115
SVVSSVTTK	9	Unmodified	_SVVSSVTTK_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;P2RX4|p.T223Qfs*13|1|0.34|ENSG00000135124|chr12:121228783-121228783|A/-|frameshift_variant;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2579650878906	2	454.258382	906.502212	0.29063	0.00013202	-0.68238	-0.00030998	-0.39176	-0.00017796	454.25809770501667	23.153	0.10273	23.153	23.107	23.21	0					4	2	2	0	0	0	0.085655	1	7634	7634		82.75	27.246	1	276770			41406	3969	27571	27683	41947	41947					0.045220613150036115
SVVSSVTTK	9	Unmodified	_SVVSSVTTK_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;P2RX4|p.T223Qfs*13|1|0.34|ENSG00000135124|chr12:121228783-121228783|A/-|frameshift_variant;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.25836181640625	2	454.258382	906.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.212	1	23.212	22.712	23.712	0								0	0	0	0.18541	1	7653	7653		53.089	7.137	1				41407	3969	27571	27683	41948	41948					0.045220613150036115
SVVSSVTTK	9	Unmodified	_SVVSSVTTK_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;P2RX4|p.T223Qfs*13|1|0.34|ENSG00000135124|chr12:121228783-121228783|A/-|frameshift_variant;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.25872802734375	2	454.258382	906.502212	4.004	0.0018189	-3.894	-0.0017689	0.10998	4.9958E-05	454.2567622766797	22.888	0.10007	22.888	22.825	22.925	0					6	3	2	0	0	0	0.33044	1	6811	6811		47.657	6.8792	1	92972			41408	3969	27571	27683	41949	41949					0.045220613150036115
SVVSSVTTK	9	Unmodified	_SVVSSVTTK_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;P2RX4|p.T223Qfs*13|1|0.34|ENSG00000135124|chr12:121228783-121228783|A/-|frameshift_variant;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.25830078125	2	454.258382	906.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.953	1	22.953	22.453	23.453	0								0	0	0	0.25587	1	6925	6925		42.864	10.909	1				41409	3969	27571	27683	41950	41950					0.045220613150036115
SVVSVLGPA	9	Unmodified	_SVVSVLGPA_					0	0	0			REV__ENST00000472558.6_1_12:6657995-6658223:-|nuORF	REV__ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.7452697753906	2	414.744911	827.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.431	1	35.431	34.931	35.931	0								0	0	0	0.23459	1	11987	11987		45.952	0	1		+		41410	19494	27572	27684	41951	41951					0.054629974944646165
SVVTAQTQT	9	Unmodified	_SVVTAQTQT_					0	0	0			REV__HIF3A|p.G326Dfs*15|1|0.32|ENSG00000124440|chr19:46312601-46312601|G/-|frameshift_variant	REV__HIF3A|p.G326Dfs*15|1|0.32|ENSG00000124440|chr19:46312601-46312601|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7452087402344	2	467.745639	933.476725	-1.0345	-0.0004839	0.0010498	4.9103E-07	-1.0335	-0.00048341	467.74576147483884	16.071	0.1222	16.071	15.982	16.104	0					5	4	2	0	0	0	0.33044	1	3792	3792		47.657	5.2612	1	49230	+		41411	14398	27573	27685	41952	41952					0.007325867925601415
SVVTLEVAK	9	Unmodified	_SVVTLEVAK_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2834777832031	2	473.2844	944.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.751	1	31.751	31.251	32.251	0								0	0	0	0.28666	1	12004	12004		37.812	0	1				41412	3640	27574	27686	41953	41953					0.07975224728750163
SVVTSIKKK	9	Unmodified	_SVVTSIKKK_					0	0	0			REV__ENSG00000140319|ENST00000267884|SRP14	REV__ENSG00000140319|ENST00000267884|SRP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.55023193359375	3	330.54997	988.628081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.081	1	16.081	15.581	16.581	0								0	0	0	0.38913	1	4380	4380		14.137	0	1		+		41413	15069	27575	27687	41954	41954					0.13331192891087085
SVVVAAGLTM	10	Unmodified	_SVVVAAGLTM_					0	0	0			REV__nc|ENSG00000169083|P10275-4|AR	REV__nc|ENSG00000169083|P10275-4|AR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2652282714844	2	474.265153	946.515753	-0.014944	-7.0876E-06	-0.12798	-6.0695E-05	-0.14292	-6.7783E-05	474.26506454345093	30.855	0.40421	30.855	30.725	31.129	0					28	16	2	0	0	0	0.47859	1	9868	9868		47.657	0	1	483800	+		41414	19896	27576	27688	41955	41955					0.04035595822585947
SVVVFFIMY	9	Unmodified	_SVVVFFIMY_					0	0	0			REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant	REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2942504882812	2	552.793546	1103.57254	0.060854	3.3639E-05	-2.8446	-0.0015725	-2.7837	-0.0015388	552.792075668951	41.205	0.17529	41.205	41.12	41.296	0					11	7	2	0	0	0	0.44593	1	16205	16205		38.806	5.9937	1	79398	+		41415	14869	27577	27689	41956	41956					0.024896433791127492
SVVWAVTKD	9	Unmodified	_SVVWAVTKD_					0	0	0		TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant;nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant	TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7723388671875	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.247	1	13.247	12.747	13.747	0								0	0	0	0.16453	1	2653	2653		49.442	16.629	1				41416	22520	27578	27690	41957	41957					0.03222054068953639
SVVWFAKGL	9	Unmodified	_SVVWFAKGL_					0	0	0		ENST00000218981.5_1_13:52365364-52378245:-|nuORF;nc|ENSG00000102796|A0PJE2|DHRS12	ENST00000218981.5_1_13:52365364-52378245:-|nuORF	ENST00000218981.5_1_13:52365364-52378245:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1939697265625	3	336.195527	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.162	1	19.162	18.662	19.662	0								0	0	0	0.36609	1	5141	5141		20.947	0.95016	1				41417	8169	27579	27691	41958	41958					0.0621925217384387
SVVWFAKGL	9	Unmodified	_SVVWFAKGL_					0	0	0		ENST00000218981.5_1_13:52365364-52378245:-|nuORF;nc|ENSG00000102796|A0PJE2|DHRS12	ENST00000218981.5_1_13:52365364-52378245:-|nuORF	ENST00000218981.5_1_13:52365364-52378245:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1939697265625	3	336.195527	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.563	1	19.563	19.063	20.063	0								0	0	0	0.36609	1	5320	5320		20.947	0.95016	1				41418	8169	27579	27691	41959	41959					0.0621925217384387
SVVWPHRL	8	Unmodified	_SVVWPHRL_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.284423828125	2	497.285069	992.555585	-0.12682	-6.3066E-05	-0.21198	-0.00010542	-0.3388	-0.00016848	497.28476817217864	39.755	0.22759	39.755	39.697	39.925	0					25	12	3	0	0	0	0.60719	1	14152	14152		47.916	3.7988	1	232710	+		41419	15728	27580	27692	41960	41960					0.05900903608164754
SVVWVLVVA	9	Unmodified	_SVVWVLVVA_					0	0	0			REV__ENSG00000188778|ENST00000345060|ADRB3	REV__ENSG00000188778|ENST00000345060|ADRB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2982177734375	2	486.299853	970.585153	-1.2406	-0.00060331	-2.5688	-0.0012492	-3.8094	-0.0018525	486.298574546519	20.329	0.11216	20.329	20.26	20.372	0					5	3	2	0	0	0	0.33044	1	5651	5651		31.955	0	1	146360	+		41420	17192	27581	27693	41961	41961					0.09868422833642398
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.7729187011719	2	507.771991	1013.52943	0.88074	0.00044722	0.26598	0.00013506	1.1467	0.00058228	507.7722343876781	24.231	0.1876	24.231	24.164	24.352	0					9	6	2	0	0	0	0.15163	1	7125	7125		67.494	18.052	1	103210			41421	4071	27582	27694	41962	41962					0.023205896460581243
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	338.8503112792969	3	338.85042	1013.52943	0.22917	7.7654E-05	-0.47391	-0.00016059	-0.24474	-8.2931E-05	338.8502788706718	24.233	0.2122	24.233	24.155	24.367	0					12	7	2	0	0	0	0.61124	1	7119	7119		27.047	1.4733	1	182810			41422	4071	27582	27694	41963	41963					0.023205896460581243
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.77215576171875	2	507.771991	1013.52943	-0.59928	-0.0003043	-0.86922	-0.00044137	-1.4685	-0.00074566	507.7714614901257	24.277	0.2601	24.277	24.182	24.442	0					23	8	4	0	0	0	0.035062	1	7406	7406		104.06	24.344	1	407420			41423	4071	27582	27694	41964	41964					0.023205896460581243
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.7721252441406	2	507.771991	1013.52943	1.13	0.00057377	-1.4287	-0.00072545	-0.29872	-0.00015168	507.7714756727612	24.46	0.66287	24.46	23.947	24.61	0					31	13	6	0	0	0	0.01873	1	8571	8571		124.08	33.303	1	2345800			41424	4071	27582	27694	41965	41965					0.023205896460581243
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7724304199219	2	507.771991	1013.52943	0.09627	4.8883E-05	0.58692	0.00029802	0.68319	0.0003469	507.7722656829282	24.304	0.21886	24.304	24.22	24.439	0					14	5	4	0	0	0	0.056004	1	7566	7566		93.143	10.903	1	327770			41425	4071	27582	27694	41966	41966					0.023205896460581243
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.77215576171875	2	507.771991	1013.52943	-1.9076	-0.00096862	0.94426	0.00047947	-0.96333	-0.00048915	507.7719407354273	24.299	0.3002	24.299	24.206	24.506	0					15	7	3	0	0	0	0.037569	1	7559	7559		101.6	32.814	1	277910			41426	4071	27582	27694	41967	41967					0.023205896460581243
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.77197265625	2	507.771991	1013.52943	1.3008	0.00066049	-1.2604	-0.00064	0.040352	2.049E-05	507.7713206658325	24.422	0.50857	24.422	24.312	24.821	0					17	10	3	0	0	0	0.022525	1	8435	8435		117.81	27.034	1	2056500			41427	4071	27582	27694	41968	41968					0.023205896460581243
SVWHGTLSK	9	Unmodified	_SVWHGTLSK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.77215576171875	2	507.771991	1013.52943	2.9588	0.0015024	-3.3076	-0.0016795	-0.34888	-0.00017715	507.77068663342357	24.455	0.26927	24.455	24.295	24.565	0					19	5	6	0	0	0	0.032052	1	8450	8450		107.01	32.752	1	2131600			41428	4071	27582	27694	41969	41969					0.023205896460581243
SVWLQELLWEY	11	Unmodified	_SVWLQELLWEY_					0	0	0		ENST00000360688.3_1_16:30124309-30124839:-|nuORF;ENST00000406256.7_1_16:30124039-30124872:-|nuORF	ENST00000360688.3_1_16:30124309-30124839:-|nuORF	ENST00000360688.3_1_16:30124309-30124839:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	733.367431640625	2	733.371735	1464.72892	-3.7942	-0.0027826	-1.7905	-0.0013131	-5.5847	-0.0040956	733.3702957712752	30.319	0.21172	30.319	30.234	30.445	0					11	5	3	0	0	0	0.14473	1	10930	10930		82.75	26.317	1	524660			41429	8866	27583	27695	41970	41970					0.015141800832907393
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.7882690429688	2	531.788173	1061.56179	0.36697	0.00019515	-0.20591	-0.0001095	0.16106	8.5648E-05	531.7880063761875	16.8	0.23253	16.8	16.656	16.888	0					23	9	3	0	0	0	0.55715	1	3865	3865		40.058	10.909	1	340670			41430	8457	27584	27696	41971	41971					0.03347377049021816
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7886962890625	2	531.788173	1061.56179	0.12216	6.4962E-05	0.1828	9.721E-05	0.30496	0.00016217	531.7882150714785	17.105	0.37354	17.105	16.929	17.302	0					26	9	4	0	0	0	0.046871	1	4735	4735		106.68	34.806	1	2930300			41431	8457	27584	27696	41972	41972					0.03347377049021816
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7877807617188	2	531.788173	1061.56179	0.31408	0.00016703	0.076984	4.0939E-05	0.39107	0.00020796	531.788106116119	16.866	0.18661	16.866	16.735	16.921	0					16	7	3	0	0	0	0.29191	1	4100	4100		63.534	19.417	1	274800			41432	8457	27584	27696	41973	41973					0.03347377049021816
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7886352539062	2	531.788173	1061.56179	0.28835	0.00015334	0.19038	0.00010124	0.47873	0.00025458	531.7882858460802	17.038	0.32027	17.038	16.879	17.2	0					17	6	4	0	0	0	0.05239	1	4975	4975		104.01	39.806	1	1684100			41433	8457	27584	27696	41974	41974					0.03347377049021816
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.7886962890625	2	531.788173	1061.56179	-1.2514	-0.00066547	1.7583	0.00093502	0.50687	0.00026955	531.7888380227553	16.888	0.26918	16.888	16.762	17.031	0					14	7	3	0	0	0	0.10624	1	4082	4082		88.177	52.559	1	284040			41434	8457	27584	27696	41975	41975					0.03347377049021816
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7884521484375	2	531.788173	1061.56179	3.4165	0.0018169	-3.728	-0.0019825	-0.31144	-0.00016562	531.7860632791649	17.059	0.31618	17.059	16.859	17.175	0					22	6	4	0	0	0	0.074075	1	4840	4840		96.034	18.716	1	1802900			41435	8457	27584	27696	41976	41976					0.03347377049021816
SVYDALPLTR	10	Unmodified	_SVYDALPLTR_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ENST00000531525.2_1_11:108160471-108165800:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.3139038085938	2	567.811313	1133.60807	1.6659	0.00094592	-2.6858	-0.001525	-1.0199	-0.00057912	567.8097218690273	41.317	0.34678	41.317	41.103	41.449	0					12	8	2	0	0	0	0.5155	1	16400	16400		43.651	4.8972	1	137250			41436	251	27585	27697	41977	41977					0.04661397160452907
SVYDHQGIFK	10	Unmodified	_SVYDHQGIFK_					0	0	0		NUS1|p.R143I|2|0.23|ENSG00000153989|chr6:117693054-117693054|G/T|missense_variant;ENSG00000153989|ENST00000368494|NUS1	NUS1|p.R143I|2|0.23|ENSG00000153989|chr6:117693054-117693054|G/T|missense_variant	NUS1|p.R143I|2|0.23|ENSG00000153989|chr6:117693054-117693054|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.3015747070312	2	597.301113	1192.58767	-0.56213	-0.00033576	1.4885	0.00088908	0.92637	0.00055332	597.8032618685464	30.312	0.14573	30.312	30.247	30.393	0					7	4	2	0	0	0	0.44601	1	9952	9952		51.193	6.8155	1	136710			41437	5068	27586	27698	41978	41978					-0.00091773499343617
SVYDHQGIFK	10	Unmodified	_SVYDHQGIFK_					0	0	0		NUS1|p.R143I|2|0.23|ENSG00000153989|chr6:117693054-117693054|G/T|missense_variant;ENSG00000153989|ENST00000368494|NUS1	NUS1|p.R143I|2|0.23|ENSG00000153989|chr6:117693054-117693054|G/T|missense_variant	NUS1|p.R143I|2|0.23|ENSG00000153989|chr6:117693054-117693054|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	398.53656005859375	3	398.536501	1192.58767	-0.6252	-0.00024916	0.88672	0.00035339	0.26152	0.00010423	398.5368032974498	30.449	0.45583	30.449	30.393	30.848	0					15	9	2	0	0	0	0.46128	1	11286	11286		70.399	28.06	1	680610			41438	5068	27586	27698	41979	41979					-0.00091773499343617
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.777099609375	2	519.776939	1037.53933	1.4452	0.00075118	-0.80873	-0.00042036	0.63647	0.00033082	519.7764625288814	33.341	0.23162	33.341	33.272	33.504	0					19	8	3	0	0	0	0.11898	1	10841	10841		75.043	25.602	1	287140			41439	3690	27587	27699	41980	41980					0.022057328607616
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7780151367188	2	519.776939	1037.53933	0.60157	0.00031268	-1.5363	-0.00079855	-0.93477	-0.00048587	519.7766951089295	33.334	0.14259	33.334	33.289	33.431	0					8	5	2	0	0	0	0.36892	1	10834	10834		44.377	5.571	1	76108			41440	3690	27587	27699	41981	41981					0.022057328607616
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.77734375	2	519.776939	1037.53933	0.99613	0.00051776	-0.81214	-0.00042213	0.18399	9.5634E-05	519.7766706378708	33.407	0.3589	33.407	33.292	33.651	0					22	10	3	0	0	0	0.035062	1	11705	11705		104.06	27.283	1	432410			41441	3690	27587	27699	41982	41982					0.022057328607616
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7774047851562	2	519.776939	1037.53933	-1.3597	-0.00070673	1.7515	0.00091039	0.39182	0.00020366	519.77797499213	33.397	0.29048	33.397	33.242	33.533	0					18	8	3	0	0	0	0.1424	1	11696	11696		69.628	18.292	1	316480			41442	3690	27587	27699	41983	41983					0.022057328607616
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7769165039062	2	519.776939	1037.53933	3.3637	0.0017484	-0.86633	-0.0004503	2.4974	0.0012981	519.7769280714881	33.541	0.56251	33.541	33.121	33.684	0					32	11	3	0	0	0	0.011389	1	12761	12761		138.06	50.366	1	1781500			41443	3690	27587	27699	41984	41984					0.022057328607616
SVYEGKIFTQK	11	Unmodified	_SVYEGKIFTQK_					0	0	0		AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000420969.1_1_2:162357792-162360000:-|nuORF;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	650.3506469726562	2	650.350803	1298.68705	-0.73039	-0.00047501	0.57068	0.00037114	-0.15971	-0.00010387	650.3510525358562	28.816	0.11707	28.816	28.745	28.863	0					4	2	2	0	0	0	0.69004	1	10609	10609		28.577	5.5342	1	101830			41444	97	27588	27700	41985	41985					0.04965624394776569
SVYENKLLNLT	11	Unmodified	_SVYENKLLNLT_					0	0	0		OLFM4|p.K132N|1|0.23|ENSG00000102837|chr13:53041948-53041948|G/T|missense_variant	OLFM4|p.K132N|1|0.23|ENSG00000102837|chr13:53041948-53041948|G/T|missense_variant	OLFM4|p.K132N|1|0.23|ENSG00000102837|chr13:53041948-53041948|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.9065246582031	3	431.906482	1292.69762	0.98896	0.00042714	-1.0667	-0.00046073	-0.07778	-3.3594E-05	431.9060508530511	32.879	0.34982	32.879	32.759	33.109	0					17	8	4	0	0	0	0.69983	1	12543	12543		27.644	7.6134	1	599750			41445	11870	27589	27701	41986	41986					0.06297607049214093
SVYGPVTAL	9	Unmodified	_SVYGPVTAL_					0	0	0			REV__nc|ENSG00000003400|Q92851-6|CASP10	REV__nc|ENSG00000003400|Q92851-6|CASP10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7513732910156	2	453.750193	905.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.169	1	38.169	37.669	38.669	0								0	0	0	0.19749	1	14965	14965		51.335	1.8939	1		+		41446	12819	27590	27702	41987	41987					0.029309801489034726
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7584228515625	2	500.758549	999.502546	-0.046338	-2.3204E-05	-0.31405	-0.00015726	-0.36039	-0.00018047	500.7583054741293	26.495	0.33782	26.495	26.412	26.75	0					27	11	4	0	0	0	0.17854	1	8042	8042		64.207	26.396	1	719290			41447	2471	27591	27703	41988	41988					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.75836181640625	2	500.758549	999.502546	-0.13499	-6.7597E-05	0.1271	6.3649E-05	-0.0078853	-3.9487E-06	500.7585096733247	26.711	0.39518	26.711	26.615	27.01	0					27	9	4	0	0	0	0.048471	1	9233	9233		95.815	37.585	1	5331600			41448	2471	27591	27703	41989	41989					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.75836181640625	2	500.758549	999.502546	-0.9889	-0.0004952	0.907	0.00045419	-0.081899	-4.1012E-05	500.7589234268909	26.495	0.36739	26.495	26.376	26.743	0					33	13	4	0	0	0	0.087861	1	8318	8318		82.241	2.5279	1	778990			41449	2471	27591	27703	41990	41990					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7577209472656	2	500.758549	999.502546	-1.0873	-0.00054448	0.49297	0.00024686	-0.59435	-0.00029762	500.75850849807176	26.488	0.14701	26.488	26.427	26.574	0					7	5	2	0	0	0	0.53083	1	8341	8341		29.15	0	1	45892			41450	2471	27591	27703	41991	41991					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7584533691406	2	500.758549	999.502546	0.92126	0.00046133	-1.0948	-0.00054824	-0.17357	-8.6916E-05	500.75793007356816	26.763	0.75999	26.763	26.46	27.22	0					35	15	5	0	0	0	0.014688	1	9606	9606		131.03	48.791	1	5004300			41451	2471	27591	27703	41992	41992					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7580261230469	2	500.758549	999.502546	0.15262	7.6425E-05	-0.73588	-0.0003685	-0.58327	-0.00029208	500.75803133765913	26.557	0.23643	26.557	26.467	26.704	0					9	5	3	0	0	0	0.17854	1	8577	8577		64.207	28.589	1	234310			41452	2471	27591	27703	41993	41993					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7583923339844	2	500.758549	999.502546	-2.1227	-0.001063	3.1684	0.0015866	1.0457	0.00052365	500.7595072664961	26.59	0.50112	26.59	26.319	26.82	0					23	11	4	0	0	0	0.014688	1	8569	8569		131.03	26.285	1	1225500			41453	2471	27591	27703	41994	41994					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7582702636719	2	500.758549	999.502546	1.1049	0.00055328	-1.0005	-0.00050099	0.10442	5.2287E-05	500.75770679901103	26.696	0.36513	26.696	26.587	26.952	0					17	7	3	0	0	0	0.12239	1	9472	9472		74.255	4.6274	1	1698200			41454	2471	27591	27703	41995	41995					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.75830078125	2	500.758549	999.502546	2.9223	0.0014634	-2.0736	-0.0010384	0.84869	0.00042499	500.75691370695523	26.679	0.87181	26.679	26.417	27.289	0					46	17	5	0	0	0	0.021961	1	9443	9443		118.74	46.866	1	8961600			41455	2471	27591	27703	41996	41996					0.002774810348682877
SVYGYGVQKR	10	Unmodified	_SVYGYGVQKR_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8092041015625	2	578.809105	1155.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.665	1	22.665	22.165	23.165	0								0	0	0	0.10088	1	7704	7704		79.713	32.055	1				41456	2471	27592	27704	41997	41997					0.03207932737564079
SVYHISGKK	9	Unmodified	_SVYHISGKK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant;SMC4|p.D465Efs*32|1|0.12|ENSG00000113810|chr3:160416372-160416373|-/GCATACATCTT|frameshift_variant;ENST00000468653.5_1_3:160117521-160130242:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7872619628906	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.652	1	16.652	16.152	17.152	0								0	0	0	0.1347	1	4801	4801		40.058	0	1				41457	2826	27593	27705	41998	41998					0.05265162680143476
SVYITLKK	8	Unmodified	_SVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2970275878906	2	476.29731	950.580068	-0.37976	-0.00018088	-0.10769	-5.1291E-05	-0.48745	-0.00023217	476.2971892559972	26.078	0.17841	26.078	25.986	26.164	0					11	4	3	0	0	0	0.29286	1	8961	8961		84.916	42.441	1	797050			41458	4377	27594	27706	41999	41999					0.10280118971036245
SVYITLKK	8	Unmodified	_SVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.29718017578125	2	476.29731	950.580068	0.63082	0.00030046	-1.0095	-0.00048082	-0.37868	-0.00018036	476.29677798984517	26.076	0.30996	26.076	25.967	26.277	0					15	6	4	0	0	0	0.35045	1	9302	9302		76.774	28.859	1	922280			41459	4377	27594	27706	42000	42000					0.10280118971036245
SVYITLKK	8	Unmodified	_SVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2969970703125	2	476.29731	950.580068	-2.7445	-0.0013072	2.4535	0.0011686	-0.29101	-0.00013861	476.2984148893773	25.902	0.18288	25.902	25.767	25.95	0					4	2	2	0	0	0	0.65148	1	8268	8268		40.778	7.2852	1	158840			41460	4377	27594	27706	42001	42001					0.10280118971036245
SVYKEAIQK	9	Unmodified	_SVYKEAIQK_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.30029296875	2	533.300581	1064.58661	1.0581	0.0005643	-0.55105	-0.00029387	0.50708	0.00027043	533.300273210523	20	0.10375	20	19.939	20.043	0					5	3	2	0	0	0	0.032383	1	5276	5276		106.68	24.443	1	235980			41461	6756	27595	27707	42002	42002					0.05690012131753974
SVYKEAIQK	9	Unmodified	_SVYKEAIQK_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.30078125	2	533.300581	1064.58661	-0.41425	-0.00022092	1.5166	0.00080882	1.1024	0.0005879	533.3011630556437	20.034	0.11731	20.034	19.976	20.093	0					9	4	3	0	0	0	0.070005	1	5534	5534		88.177	24.643	1	230970			41462	6756	27595	27707	42003	42003					0.05690012131753974
SVYKEAIQK	9	Unmodified	_SVYKEAIQK_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.3007202148438	2	533.300581	1064.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.245	1	20.245	19.745	20.745	0								0	0	0	0.018495	1	6531	6531		101.46	32.614	1				41463	6756	27595	27707	42004	42004					0.05690012131753974
SVYKEAIQK	9	Unmodified	_SVYKEAIQK_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.3015747070312	2	533.300581	1064.58661	1.1324	0.00060391	0.48158	0.00025683	1.614	0.00086073	533.30055239784	20.092	0.1313	20.092	20.01	20.141	0					5	3	2	0	0	0	0.14578	1	5594	5594		68.846	15.909	1	184120			41464	6756	27595	27707	42005	42005					0.05690012131753974
SVYKEAIQK	9	Unmodified	_SVYKEAIQK_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.3008422851562	2	533.300581	1064.58661	1.7809	0.00094978	-1.051	-0.00056049	0.72997	0.00038929	533.2999018088366	20.234	0.16857	20.234	20.176	20.344	0					5	3	2	0	0	0	0.022525	1	6406	6406		117.81	27.441	1	1556400			41465	6756	27595	27707	42006	42006					0.05690012131753974
SVYLERLK	8	Unmodified	_SVYLERLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.29815673828125	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.404	1	33.404	32.904	33.904	0								0	0	0	1.7419	1	12349	12349		56.721	7.2795	1				41466	6541	27596	27708	42007	42007					0.07810333339944009
SVYNKKRR	8	Unmodified	_SVYNKKRR_					0	0	0		ZNF567|p.A246V|1|0.31|ENSG00000189042|chr19:36719461-36719461|C/T|missense_variant;ZNF567|p.H253Tfs*5|1|0.37|ENSG00000189042|chr19:36719472-36719473|-/A|frameshift_variant;ZNF567|p.T332Gfs*16|1|0.18|ENSG00000189042|chr19:36719718-36719721|ACAG/-|frameshift_variant;ZNF567|p.R581Tfs*8|1|0.07|ENSG00000189042|chr19:36720466-36720470|GAACT/-|frameshift_variant;nc|ENSG00000189042|Q8N184-2|ZNF567;nc|ENSG00000189042|Q8N184-1|ZNF567;ENSG00000189042|ENST00000682579|ZNF567	ZNF567|p.A246V|1|0.31|ENSG00000189042|chr19:36719461-36719461|C/T|missense_variant	ZNF567|p.A246V|1|0.31|ENSG00000189042|chr19:36719461-36719461|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8778381347656	3	350.87708	1049.60941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.069	1	35.069	34.569	35.569	0								0	0	0	1.7419	1	13504	13504		30.504	0.95289	1				41467	7292	27597	27709	42008	42008					0.08659076039884894
SVYRGSLTQR	10	Unmodified	_SVYRGSLTQR_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477457.1_1_2:238455116-238462232:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.817138671875	2	583.817461	1165.62037	0.47116	0.00027507	-0.76436	-0.00044625	-0.2932	-0.00017117	583.8170143483339	20.876	0.12607	20.876	20.825	20.951	0					8	4	3	0	0	0	0.13663	1	5662	5662		89.029	6.7238	1	210830			41468	2927	27598	27710	42009	42009					0.04418433623504825
SVYRGSLTQR	10	Unmodified	_SVYRGSLTQR_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477457.1_1_2:238455116-238462232:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.8178100585938	2	583.817461	1165.62037	0.015156	8.8482E-06	0.78843	0.0004603	0.80359	0.00046915	583.8180466508496	21.212	0.2279	21.212	21.123	21.35	0					15	5	4	0	0	0	0.30252	1	6694	6694		66.962	13.61	1	1903200			41469	2927	27598	27710	42010	42010					0.04418433623504825
SVYRGSLTQR	10	Unmodified	_SVYRGSLTQR_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477457.1_1_2:238455116-238462232:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.8178100585938	2	583.817461	1165.62037	0.55697	0.00032517	0.16765	9.7874E-05	0.72461	0.00042304	583.8175833449288	20.984	0.11411	20.984	20.919	21.033	0					6	3	2	0	0	0	0.50287	1	6014	6014		45.022	2.1579	1	353610			41470	2927	27598	27710	42011	42011					0.04418433623504825
SVYSDIVGK	9	Unmodified	_SVYSDIVGK_					0	0	0		nc|ENSG00000162065|Q9ULP9-2|TBC1D24;ENSG00000162065|ENST00000646147|TBC1D24	nc|ENSG00000162065|Q9ULP9-2|TBC1D24	nc|ENSG00000162065|Q9ULP9-2|TBC1D24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2591552734375	2	484.258382	966.502212	-0.095382	-4.619E-05	1.1119	0.00053845	1.0165	0.00049226	484.25884089821574	35.654	0.19621	35.654	35.579	35.775	0					10	5	2	0	0	0	0.07136	1	13826	13826		87.696	26.724	1	185870			41471	5440	27599	27711	42012	42012					0.017620613150029385
SVYSGIRHK	9	Unmodified	_SVYSGIRHK_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A;JAG1-INPP5A|1|fusion;INPP5A|p.P199H|1|0.09|ENSG00000068383|chr10:132710405-132710405|C/A|missense_variant;ENST00000487614.1_1_10:134511381-134540457:+|nuORF;ENST00000498337.1_1_10:134523853-134567324:+|nuORF	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.7907104492188	2	523.790715	1045.56688	0.74194	0.00038862	-0.30455	-0.00015952	0.43739	0.0002291	523.7903902232957	17.521	0.12791	17.521	17.462	17.59	0					9	4	3	0	0	0	0.10915	1	4186	4186		77.318	20.597	1	323300			41472	1421	27600	27712	42013	42013					0.04591680911653384
SVYSGIRHK	9	Unmodified	_SVYSGIRHK_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A;JAG1-INPP5A|1|fusion;INPP5A|p.P199H|1|0.09|ENSG00000068383|chr10:132710405-132710405|C/A|missense_variant;ENST00000487614.1_1_10:134511381-134540457:+|nuORF;ENST00000498337.1_1_10:134523853-134567324:+|nuORF	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7913208007812	2	523.790715	1045.56688	0.090566	4.7438E-05	0.58236	0.00030503	0.67292	0.00035247	523.7911088526856	17.852	0.1798	17.852	17.762	17.942	0					12	4	4	0	0	0	0.015496	1	5101	5101		129.42	52.104	1	2252900			41473	1421	27600	27712	42014	42014					0.04591680911653384
SVYSGIRHK	9	Unmodified	_SVYSGIRHK_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A;JAG1-INPP5A|1|fusion;INPP5A|p.P199H|1|0.09|ENSG00000068383|chr10:132710405-132710405|C/A|missense_variant;ENST00000487614.1_1_10:134511381-134540457:+|nuORF;ENST00000498337.1_1_10:134523853-134567324:+|nuORF	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7911987304688	2	523.790715	1045.56688	0.037241	1.9507E-05	0.1552	8.1292E-05	0.19244	0.0001008	523.7909743830182	17.777	0.11819	17.777	17.718	17.836	0					6	2	3	0	0	0	0.078509	1	5351	5351		85.161	16.374	1	377080			41474	1421	27600	27712	42015	42015					0.04591680911653384
SVYSGIRHK	9	Unmodified	_SVYSGIRHK_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A;JAG1-INPP5A|1|fusion;INPP5A|p.P199H|1|0.09|ENSG00000068383|chr10:132710405-132710405|C/A|missense_variant;ENST00000487614.1_1_10:134511381-134540457:+|nuORF;ENST00000498337.1_1_10:134523853-134567324:+|nuORF	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7911987304688	2	523.790715	1045.56688	-1.2779	-0.00066933	1.1796	0.00061784	-0.098294	-5.1486E-05	523.7913401122775	17.632	0.17904	17.632	17.558	17.737	0					5	4	2	0	0	0	0.023928	1	4427	4427		115.49	38.72	1	258640			41475	1421	27600	27712	42016	42016					0.04591680911653384
SVYSPVKKK	9	Unmodified	_SVYSPVKKK_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42;ENST00000497500.1_7:23221671-23226770:+|nuORF;ENST00000487595.1_7:23221671-23236000:+|nuORF	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.31396484375	2	518.313492	1034.61243	0.052661	2.7295E-05	0.92183	0.0004778	0.97449	0.00050509	518.3140528705637	16.104	0.26841	16.104	15.926	16.194	0					12	6	3	0	0	0	0.063823	1	4303	4303		90.37	23.941	1	542930			41476	4067	27601	27713	42017	42017					0.09650906374031365
SVYSPVKKK	9	Unmodified	_SVYSPVKKK_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42;ENST00000497500.1_7:23221671-23226770:+|nuORF;ENST00000487595.1_7:23221671-23236000:+|nuORF	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.3132934570312	2	518.313492	1034.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.855	1	15.855	15.355	16.355	0								0	0	0	0.14033	1	3637	3637		62.107	12.666	1				41477	4067	27601	27713	42018	42018					0.09650906374031365
SVYSRESQ	8	Unmodified	_SVYSRESQ_					0	0	0			REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.228271484375	2	478.227613	954.440674	0.42617	0.00020381	1.0458	0.00050014	1.472	0.00070395	478.22812561741	24.828	0.45659	24.828	24.573	25.03	0					28	11	3	0	0	0	0.69548	1	8402	8402		34.173	1.3601	1	893750	+		41478	21786	27602	27714	42019	42019					-0.038368703842706964
SVYSRESQ	8	Unmodified	_SVYSRESQ_					0	0	0			REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.228759765625	2	478.227613	954.440674	3.4531	0.0016514	-1.7907	-0.00085634	1.6625	0.00079505	478.2270832938892	24.565	0.28242	24.565	24.413	24.695	0					12	9	2	0	0	0	0.68432	1	7520	7520		35.618	6.4687	1	68345	+		41479	21786	27602	27714	42020	42020					-0.038368703842706964
SVYTHSYL	8	Unmodified	_SVYTHSYL_					0	0	0		nc|ENSG00000188833|Q5MY95-2|ENTPD8;ENSG00000188833|ENST00000371506|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.2353515625	2	485.23745	968.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.041	1	27.041	26.541	27.541	0								0	0	0	1.7419	1	8794	8794		33.516	4.366	1				41480	7278	27603	27715	42021	42021					-0.025144943735199377
SVYVLVRQK	9	Unmodified	_SVYVLVRQK_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.3323364257812	2	546.332216	1090.64988	1.2084	0.00066017	-0.52223	-0.00028531	0.68613	0.00037485	546.3319315873739	26.031	0.2564	26.031	25.937	26.193	0					20	9	3	0	0	0	0.18416	1	7844	7844		56.721	10.769	1	550770			41481	7478	27604	27716	42022	42022					0.10817997639651367
SVYVLVRQK	9	Unmodified	_SVYVLVRQK_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3329467773438	2	546.332216	1090.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.291	1	26.291	25.791	26.791	0								0	0	0	0.009986	1	9050	9050		143.89	61.582	1				41482	7478	27604	27716	42023	42023					0.10817997639651367
SVYVLVRQK	9	Unmodified	_SVYVLVRQK_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.557373046875	3	364.557236	1090.64988	-0.96612	-0.00035221	0.97183	0.00035429	0.0057103	2.0817E-06	364.55758356793666	26.029	0.24894	26.029	25.968	26.216	0					13	8	3	0	0	0	0.61124	1	8139	8139		19.997	0.89325	1	167460			41483	7478	27604	27716	42024	42024					0.10817997639651367
SVYVLVRQK	9	Unmodified	_SVYVLVRQK_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3324584960938	2	546.332216	1090.64988	0.33501	0.00018303	0.24056	0.00013143	0.57558	0.00031446	546.3323311645177	26.3	0.20767	26.3	26.202	26.41	0					10	4	3	0	0	0	0.02429	1	9383	9383		98.629	37.657	1	618760			41484	7478	27604	27716	42025	42025					0.10817997639651367
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.8328247070312	2	549.831517	1097.64848	1.274	0.00070048	-0.22385	-0.00012308	1.0501	0.0005774	549.8313047179156	30.415	0.2769	30.415	30.316	30.592	0					28	10	4	0	0	0	0.15558	1	9668	9668		69.628	34.427	1	623970			41485	5257;7505	27605	27717	42026	42026					0.10356363550886272
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8316040039062	2	549.831517	1097.64848	0.53511	0.00029422	0.22484	0.00012362	0.75995	0.00041784	549.8315764933253	30.7	0.40147	30.7	30.553	30.955	0					28	9	5	0	0	0	0.015992	1	11082	11082		124.08	124.08	1	3389500			41486	5257;7505	27605	27717	42027	42027					0.10356363550886272
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.3324584960938	2	549.831517	1097.64848	0.33951	0.00018668	0.60772	0.00033414	0.94723	0.00052082	549.831768648426	30.467	0.50038	30.467	30.346	30.846	0					42	17	3	0	0	0	0.13907	1	9986	9986		72.879	43.73	1	1436500			41487	5257;7505	27605	27717	42028	42028					0.10356363550886272
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8316650390625	2	549.831517	1097.64848	1.7093	0.00093982	-1.0825	-0.00059521	0.62676	0.00034461	549.8308691796718	30.641	1.0255	30.641	30.546	31.572	0					63	23	5	0	0	0	0.0015666	1	11483	11483		162.25	94.759	1	10486000			41488	5257;7505	27605	27717	42029	42029					0.10356363550886272
SVYYNEATGGK	11	Unmodified	_SVYYNEATGGK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.7804565429688	2	594.78021	1187.54587	1.4362	0.00085422	-0.85982	-0.0005114	0.57637	0.00034281	594.7796493653422	24.803	0.5611	24.803	24.447	25.008	0					25	11	4	0	0	0	0.00099199	1	8734	8734		133.91	80.823	1	2080300			41489	7342	27606	27718	42030	42030					-0.04040373978523348
SVYYNEATGGK	11	Unmodified	_SVYYNEATGGK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.7800903320312	2	594.78021	1187.54587	0.49968	0.0002972	-0.56594	-0.00033661	-0.066265	-3.9413E-05	594.7797108437943	24.663	0.23673	24.663	24.547	24.784	0					11	5	3	0	0	0	0.084685	1	7731	7731		93.442	54.189	1	224450			41490	7342	27606	27718	42031	42031					-0.04040373978523348
SWAPALRLQ	9	Unmodified	_SWAPALRLQ_					0	0	0		ENST00000505306.5_1_17:48154293-48154716:+|nuORF	ENST00000505306.5_1_17:48154293-48154716:+|nuORF	ENST00000505306.5_1_17:48154293-48154716:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.294189453125	2	521.295633	1040.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.657	1	10.657	10.157	11.157	0								0	0	0	0.40021	1	2064	2064		10.866	2.0432	1				41491	10182	27607	27719	42032	42032					0.058048689170163925
SWCEMPRPTL	10	Unmodified	_SWCEMPRPTL_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|327|3|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|327|3|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|327|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	610.2816772460938	2	610.283551	1218.55255	-0.62609	-0.00038209	-2.4431	-0.001491	-3.0692	-0.0018731	610.2819303240447	19.946	0.13809	19.946	19.872	20.011	0					6	4	2	0	0	0	0.54197	1	5501	5501		40.778	5.6261	1	117870			41492	11188	27608	27720	42033	42033					-0.04798475623147169
SWCRFILKQ	9	Carbamidomethyl (C)	_SWC(Carbamidomethyl (C))RFILKQ_	SWC(1)RFILKQ		SWC(64)RFILKQ		0	1	0			REV__ENST00000338785.7_1_21:38884979-38885171:+|nuORF	REV__ENST00000338785.7_1_21:38884979-38885171:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.3302612304688	2	619.32915	1236.64375	3.0798	0.0019074	-1.222	-0.00075682	1.8578	0.0011506	619.328402635699	24.891	0.20817	24.891	24.787	24.996	0					10	4	3	0	0	0	0.17854	1	8657	8657		64.207	64.207	1	1038600	+		41493	18436	27609	27721	42034	42034	653				0.034891561364702284
SWDYRWNLT	9	Unmodified	_SWDYRWNLT_					0	0	0		nc|ENSG00000279968|A0A096LPI5|CCDC28A-AS1	nc|ENSG00000279968|A0A096LPI5|CCDC28A-AS1	nc|ENSG00000279968|A0A096LPI5|CCDC28A-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	620.7896118164062	2	620.790912	1239.56727	0.14916	9.2599E-05	-0.62904	-0.0003905	-0.47988	-0.00029791	620.7903875301909	39.063	0.47878	39.063	38.863	39.342	0					29	17	2	0	0	0	0.59802	1	14816	14816		21.96	0.25755	1	145020			41494	11809	27610	27722	42035	42035					-0.042929441591468276
SWEDAAILL	9	Unmodified	_SWEDAAILL_					0	0	0		CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant;CSF2RB|p.A662Lfs*36|1|0.46|ENSG00000100368|chr22:36937788-36937788|G/-|frameshift_variant;ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2640686035156	2	509.266207	1016.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.009	1	24.009	23.509	24.509	0								0	0	0	0.31623	1	7419	7419		31.955	6.5047	1				41495	696	27611	27723	42036	42036					0.010263478320553077
SWFINQSVQS	10	Unmodified	_SWFINQSVQS_					0	0	0		nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	598.2918090820312	2	598.290745	1194.56694	0.26117	0.00015625	1.1894	0.00071162	1.4506	0.00086787	598.291505944824	12.781	0.11327	12.781	12.721	12.834	0					10	6	3	0	0	0	0.55603	1	2550	2550		39.253	2.8061	1	290050			41496	4053	27612	27724	42037	42037					-0.02256363878996126
SWGTLAVLAL	10	Unmodified	_SWGTLAVLAL_					0	0	0		ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7994384765625	2	515.800217	1029.58588	-1.5332	-0.00079082	-1.1115	-0.0005733	-2.6447	-0.0013641	515.7997772149572	32.247	0.12591	32.247	32.188	32.314	0					8	3	3	0	0	0	0.44469	1	11217	11217		51.335	1.7994	1	66627			41497	1662	27613	27725	42038	42038					0.07227217482704873
SWINVKPGYAK	11	Unmodified	_SWINVKPGYAK_					0	0	0			REV__PAK2|p.D425N|1|0.11|ENSG00000180370|chr3:196820490-196820490|G/A|missense_variant	REV__PAK2|p.D425N|1|0.11|ENSG00000180370|chr3:196820490-196820490|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	631.8477172851562	2	631.84823	1261.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.043	1	45.043	44.543	45.543	0								0	0	0	0.44027	1	16814	16814		28.081	1.3886	1		+		41498	21333	27614	27726	42039	42039					0.06153365322802529
SWKDMEPQ	8	Unmodified	_SWKDMEPQ_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7251281738281	2	510.726392	1019.43823	-0.0057159	-2.9193E-06	-2.2229	-0.0011353	-2.2286	-0.0011382	510.7251358896275	12.398	0.18193	12.398	12.32	12.502	0					16	6	3	0	0	0	0.68432	1	2601	2601		35.618	6.4687	1	157140			41499	1272	27615	27727	42040	42040					-0.07071042113591375
SWLIIQRY	8	Unmodified	_SWLIIQRY_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1;AOC1|p.R197H|1|0.23|ENSG00000002726|chr7:150857060-150857060|G/A|missense_variant	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.2065124511719	3	360.206315	1077.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.54	1	46.54	46.04	47.04	0								0	0	0	1.7419	1	14861	14861		17.365	1.7232	1				41500	929	27616	27728	42041	42041					0.06142039576843672
SWLKLLIQV	9	Unmodified	_SWLKLLIQV_					0	0	0			REV__ENST00000451057.1_1_7:156990296-156991186:-|nuORF	REV__ENST00000451057.1_1_7:156990296-156991186:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.34619140625	2	550.347335	1098.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.286	1	17.286	16.786	17.786	0								0	0	0	0.37517	1	4304	4304		11.511	4.7755	1		+		41501	17594	27617	27729	42042	42042					0.1347235630482828
SWLPNLDG	8	Unmodified	_SWLPNLDG_					0	0	0		GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant;ENSG00000187730|ENST00000378585|GABRD	GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant	GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2240905761719	2	451.224342	900.434132	-0.13762	-6.2099E-05	-0.37195	-0.00016783	-0.50957	-0.00022993	451.22414911552676	28.755	0.52112	28.755	28.599	29.12	0					23	13	2	0	0	0	0.58597	1	9736	9736		51.335	3.4199	1	462750			41502	7212	27618	27730	42043	42043					-0.020067635449890986
SWLRHAGATIG	11	Unmodified	_SWLRHAGATIG_					0	0	0			REV__ENSG00000099194|ENST00000370355|SCD	REV__ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	390.5458679199219	3	390.21224	1167.61489	-1.2225	-0.00047704	0.022331	8.714E-06	-1.2002	-0.00046833	390.21228792788247	22.911	0.27682	22.911	22.794	23.071	0					24	9	4	0	0	0	0.67983	1	6795	6795		29.551	0.40119	1	1133800	+		41503	13485	27619	27731	42044	42044					0.03778754831682818
SWLWRVSTC	9	Unmodified	_SWLWRVSTC_					0	0	0			REV__POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	REV__POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2775268554688	2	569.279126	1136.5437	1.9751	0.0011244	-3.849	-0.0021912	-1.8739	-0.0010668	569.2762230852946	34.314	0.3724	34.314	34.213	34.585	0					32	9	5	0	0	0	0.2873	1	13207	13207		51.335	1.7994	1	1206500	+		41504	21400	27620	27732	42045	42045					-0.019110811973177988
SWNAVPASI	9	Unmodified	_SWNAVPASI_					0	0	0		ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.74566650390625	2	472.745442	943.476331	0.59094	0.00027937	-0.89133	-0.00042137	-0.30039	-0.00014201	472.74512520832957	33.762	0.35951	33.762	33.605	33.964	0					14	9	2	0	0	0	0.19605	1	12963	12963		62.107	6.6032	1	806530			41505	7109	27621	27733	42046	42046					0.002332118633717073
SWNGHTPCPDS	11	Unmodified	_SWNGHTPCPDS_					0	0	0			REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.2404174804688	2	600.740562	1199.46657	0.25667	0.00015419	-2.5103	-0.001508	-2.2536	-0.0013538	600.7387951383072	49.891	0.15226	49.891	49.785	49.937	0					8	5	2	0	0	0	0.63398	1	18753	18753		33.922	2.3918	1	62627	+		41506	15181	27622	27734	42047	42047					-0.12518344204318055
SWPFVFSPS	9	Unmodified	_SWPFVFSPS_					0	0	0			REV__ENST00000394077.7_1_3:101405380-101405572:-|nuORF	REV__ENST00000394077.7_1_3:101405380-101405572:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2570190429688	2	527.255643	1052.49673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.429	1	20.429	19.929	20.929	0								0	0	0	0.23459	1	6619	6619		45.952	1.4209	1		+		41507	18858	27623	27735	42048	42048					-0.027416174767949997
SWQTLGVI	8	Unmodified	_SWQTLGVI_					0	0	0			REV__nc|ENSG00000117016|Q9UJD0-2|RIMS3	REV__nc|ENSG00000117016|Q9UJD0-2|RIMS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.2504577636719	2	452.25036	902.486168	0.72056	0.00032587	0.16219	7.335E-05	0.88275	0.00039922	452.2504711643729	34.416	0.36331	34.416	34.336	34.699	0					24	9	3	0	0	0	0.65276	1	13273	13273		40.573	4.9543	1	408660	+		41508	14176	27624	27736	42049	42049					0.03102399868782868
SWRGFGVESL	10	Unmodified	_SWRGFGVESL_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.86102294921875	3	379.861096	1136.56146	0.29024	0.00011025	-0.25925	-9.848E-05	0.030991	1.1772E-05	379.8609861050633	26.187	0.26673	26.187	26.052	26.319	0					14	6	3	0	0	0	0.62235	1	8383	8383		29.551	29.551	1	209280	+		41509	17716	27625	27737	42050	42050					-0.0013604267080609134
SWRSILTEHKR	11	Unmodified	_SWRSILTEHKR_					0	0	0		ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	707.3909301757812	2	706.891492	1411.76843	-2.4531	-0.0017341	-0.89933	-0.00063573	-3.3524	-0.0023698	707.3924130458636	36.681	1.1514	36.681	35.9	37.052	0					78	48	2	0	0	0	0.77123	1	12961	12961		20.837	3.3691	1	83252			41510	6853	27626	27738	42051	42051					0.07901744877335659
SWSTIVTFI	9	Unmodified	_SWSTIVTFI_					0	0	0			REV__ENST00000297591.9_1_8:95531645-95538493:-|nuORF	REV__ENST00000297591.9_1_8:95531645-95538493:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2853393554688	2	527.2844	1052.55425	1.6281	0.00085845	-0.17091	-9.0117E-05	1.4571	0.00076833	527.2845805829583	42.625	0.24087	42.625	42.545	42.786	0					11	6	2	0	0	0	0.18605	1	17052	17052		63.306	17.354	1	89150	+		41511	18188	27627	27739	42052	42052					0.030072247287534992
SWVKGPLSPE	10	Unmodified	_SWVKGPLSPE_					0	0	0		ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL;ENSG00000187994|ENST00000591812|RINL	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7938842773438	2	550.292756	1098.57096	0.54678	0.00030089	-0.23787	-0.0001309	0.30891	0.00016999	550.2927876276666	40.687	0.41711	40.687	40.497	40.914	0					30	14	3	0	0	0	0.61187	1	15481	15481		32.812	0	1	268300			41512	7228	27628	27740	42053	42053					0.025617256147143053
SWWIDHAGQ	9	Unmodified	_SWWIDHAGQ_					0	0	0			REV__L1MC5_dup2219|chr2:240616384-240616624:-|1.426517432550395|0.100608666825259|3.83|456.0|10|2|anti-sense	REV__L1MC5_dup2219|chr2:240616384-240616624:-|1.426517432550395|0.100608666825259|3.83|456.0|10|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2523193359375	2	550.251423	1098.48829	0.59125	0.00032533	0.83163	0.0004576	1.4229	0.00078294	550.2518391143112	15.468	0.14892	15.468	15.364	15.513	0					6	3	2	0	0	0	0.35045	1	4094	4094		45.952	0	1	142010	+		41513	20812	27629	27741	42054	42054					-0.05701171393434379
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2804565429688	2	544.28018	1086.54581	1.1709	0.00063727	-0.46844	-0.00025496	0.70241	0.00038231	544.2799100670136	19.428	0.20475	19.428	19.361	19.566	0					15	6	3	0	0	0	0.093587	1	5016	5016		56.632	1.9099	1	1250000			41514	9490	27630	27742	42055	42055					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.18927001953125	3	363.189212	1086.54581	0.10265	3.7281E-05	-0.04035	-1.4655E-05	0.0623	2.2627E-05	363.1893470637066	19.428	0.10213	19.428	19.361	19.463	0					7	3	3	0	0	0	0.41958	1	5029	5029		40.058	7.3076	1	204950			41515	9490	27630	27742	42056	42056					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2803955078125	2	544.28018	1086.54581	0.36635	0.0001994	0.57273	0.00031173	0.93908	0.00051112	544.2804380947158	19.782	0.64602	19.782	19.693	20.339	0					30	14	4	0	0	0	0.0093724	1	6019	6019		114.89	32.654	1	8718200			41516	9490	27630	27742	42057	42057					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.1893005371094	3	363.189212	1086.54581	0.47821	0.00017368	-0.33303	-0.00012095	0.14518	5.2728E-05	363.18905952024284	19.782	0.37155	19.782	19.693	20.064	0					13	8	2	0	0	0	0.24334	1	6035	6035		56.434	20.816	1	1958200			41517	9490	27630	27742	42058	42058					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.189453125	3	363.189212	1086.54581	-0.95153	-0.00034559	1.1669	0.00042382	0.21542	7.8238E-05	363.1896916952382	19.448	0.18029	19.448	19.382	19.562	0					9	5	2	0	0	0	0.40759	1	5279	5279		41.08	2.3265	1	178730			41518	9490	27630	27742	42059	42059					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.281005859375	2	544.28018	1086.54581	-0.20515	-0.00011166	1.2524	0.00068165	1.0472	0.00056999	544.2808536863821	19.441	0.33658	19.441	19.369	19.706	0					14	10	3	0	0	0	0.039418	1	5270	5270		74.165	21.228	1	613600			41519	9490	27630	27742	42060	42060					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2803344726562	2	544.28018	1086.54581	0.32511	0.00017695	0.40496	0.00022041	0.73007	0.00039737	544.2803289584623	19.65	0.51921	19.65	19.543	20.062	0					21	10	3	0	0	0	0.021035	1	6238	6238		93.598	11.357	1	6073000			41520	9490	27630	27742	42061	42061					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.280517578125	2	544.28018	1086.54581	-1.494	-0.00081318	2.0122	0.0010952	0.51814	0.00028201	544.2813693854132	19.531	0.22116	19.531	19.437	19.658	0					10	5	3	0	0	0	0.064446	1	5327	5327		65.157	0	1	804470			41521	9490	27630	27742	42062	42062					0.005996708121301708
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7220764160156	2	500.722164	999.429775	-0.046598	-2.3332E-05	-0.27492	-0.00013766	-0.32152	-0.00016099	500.7219276568545	38.904	0.24796	38.904	38.835	39.083	0					27	14	3	0	0	0	0.022525	1	12665	12665		117.81	49.024	1	168430			41522	5022	27631	27743	42063	42063					-0.06996272758567557
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.721923828125	2	500.722164	999.429775	-0.13722	-6.8707E-05	-0.079151	-3.9633E-05	-0.21637	-0.00010834	500.7220799675011	39.228	0.33327	39.228	39.151	39.484	0					29	11	4	0	0	0	0.012936	1	14926	14926		134.77	60.791	1	979260			41523	5022	27631	27743	42064	42064					-0.06996272758567557
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7222900390625	2	500.722164	999.429775	0.15276	7.6492E-05	-0.097287	-4.8714E-05	0.055476	2.7778E-05	500.7220480465409	38.99	0.2608	38.99	38.908	39.169	0					28	13	3	0	0	0	0.082776	1	13915	13915		83.647	28.143	1	212310			41524	5022	27631	27743	42065	42065					-0.06996272758567557
SYASEIKEL	9	Unmodified	_SYASEIKEL_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2;SOGA1|p.D1221Gfs*26|1|0.3|ENSG00000149639|chr20:36794420-36794421|-/C|frameshift_variant	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2689819335938	2	520.268947	1038.52334	0.25574	0.00013305	0.69799	0.00036314	0.95372	0.00049619	520.2691230684583	40.178	0.27449	40.178	40.073	40.348	0					24	15	3	0	0	0	0.30951	1	13450	13450		49.442	1.5259	1	180650			41525	4901	27632	27744	42066	42066					0.005620266238793192
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;SPG11|p.L950Wfs*13|2|0.21|ENSG00000104133|chr15:44615552-44615552|A/-|frameshift_variant	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	612.8035888671875	2	612.80402	1223.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.963	1	33.963	33.463	34.463	0								0	0	0	0.27575	1	11081	11081		54.722	15.47	1				41526	2268	27633	27745	42067	42067					-0.009366749876789981
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;SPG11|p.L950Wfs*13|2|0.21|ENSG00000104133|chr15:44615552-44615552|A/-|frameshift_variant	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	612.80419921875	2	612.80402	1223.59349	-0.86192	-0.00052819	0.80027	0.00049041	-0.061643	-3.7775E-05	612.8046187997717	34.179	0.31888	34.179	34.094	34.413	0					12	8	2	0	0	0	0.012989	1	12713	12713		131.62	73.386	1	458660			41527	2268	27633	27745	42068	42068					-0.009366749876789981
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;SPG11|p.L950Wfs*13|2|0.21|ENSG00000104133|chr15:44615552-44615552|A/-|frameshift_variant	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	612.8045654296875	2	612.80402	1223.59349	0.94362	0.00057825	-0.51987	-0.00031858	0.42375	0.00025967	612.8041785565676	34.206	0.29315	34.206	34.092	34.385	0					11	7	2	0	0	0	0.073361	1	13165	13165		101.46	38.154	1	264810			41528	2268	27633	27745	42069	42069					-0.009366749876789981
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;SPG11|p.L950Wfs*13|2|0.21|ENSG00000104133|chr15:44615552-44615552|A/-|frameshift_variant	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.8045043945312	2	612.80402	1223.59349	-1.994	-0.001222	1.7229	0.0010558	-0.27112	-0.00016614	612.8055290504382	33.985	0.1765	33.985	33.918	34.095	0					7	5	2	0	0	0	0.19191	1	11982	11982		80.455	26.858	1	90947			41529	2268	27633	27745	42070	42070					-0.009366749876789981
SYDDWEPL	8	Unmodified	_SYDDWEPL_					0	0	0			REV__PHKG1|p.S251L|1|0.26|ENSG00000164776|chr7:56081933-56081933|G/A|missense_variant	REV__PHKG1|p.S251L|1|0.26|ENSG00000164776|chr7:56081933-56081933|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.714599609375	2	512.716547	1023.41854	-1.6854	-0.00086412	-1.1915	-0.0006109	-2.8769	-0.001475	512.7162254496876	30.609	0.44505	30.609	30.243	30.688	0					27	11	3	0	0	0	0.6282	1	10404	10404		44.531	2.0566	1	170840	+		41530	21366	27634	27746	42071	42071					-0.0922309485272308
SYDTFHVSK	9	Unmodified	_SYDTFHVSK_					0	0	0			REV__nc|ENSG00000163701|Q8NFR9-4|IL17RE	REV__nc|ENSG00000163701|Q8NFR9-4|IL17RE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.260986328125	2	542.258914	1082.50327	1.8874	0.0010235	1.2409	0.00067287	3.1283	0.0016963	542.2595917679212	25.587	0.5153	25.587	25.454	25.969	0					39	10	6	0	0	0	0.20551	1	8732	8732		60.972	9.6365	1	12698000	+		41531	15908	27635	27747	42072	42072					-0.034677243161013394
SYDTFHVSK	9	Unmodified	_SYDTFHVSK_					0	0	0			REV__nc|ENSG00000163701|Q8NFR9-4|IL17RE	REV__nc|ENSG00000163701|Q8NFR9-4|IL17RE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2606811523438	2	542.258914	1082.50327	2.0362	0.0011041	1.0059	0.00054548	3.0421	0.0016496	542.2594648879503	25.506	0.55118	25.506	25.347	25.898	0					35	9	5	0	0	0	0.16002	1	8925	8925		66.429	5.4573	1	23739000	+		41532	15908	27635	27747	42073	42073					-0.034677243161013394
SYDTFHVSK	9	Unmodified	_SYDTFHVSK_					0	0	0			REV__nc|ENSG00000163701|Q8NFR9-4|IL17RE	REV__nc|ENSG00000163701|Q8NFR9-4|IL17RE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.260986328125	2	542.258914	1082.50327	3.5791	0.0019408	-0.26096	-0.00014151	3.3182	0.0017993	542.2588746254575	25.489	0.45627	25.489	25.381	25.837	0					27	7	5	0	0	0	0.13267	1	8919	8919		71.877	5.4482	1	9840700	+		41533	15908	27635	27747	42074	42074					-0.034677243161013394
SYDTITVHW	9	Unmodified	_SYDTITVHW_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2671508789062	2	561.266739	1120.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.691	1	44.691	44.191	45.191	0								0	0	0	0.23459	1	17905	17905		45.952	10.334	1				41534	2138	27636	27748	42075	42075					-0.036514377990670255
SYEHVPAW	8	Unmodified	_SYEHVPAW_					0	0	0		ENST00000246672.3_1_17:38251239-38251841:-|nuORF	ENST00000246672.3_1_17:38251239-38251841:-|nuORF	ENST00000246672.3_1_17:38251239-38251841:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7274169921875	2	494.729792	987.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.321	1	20.321	19.821	20.821	0								0	0	0	1.7419	1	5691	5691		28.254	0	1				41535	8232	27637	27749	42076	42076					-0.04919361170721004
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7764587402344	2	506.776742	1011.53893	-0.037283	-1.8894E-05	0.045084	2.2848E-05	0.0078019	3.9538E-06	506.7766656453051	39.095	0.28398	39.095	38.998	39.282	0					19	10	3	0	0	0	0.048471	1	14864	14864		95.815	42.464	1	197040			41536	1738	27638	27750	42077	42077					0.033623579315758434
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.777099609375	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.896	1	38.896	38.396	39.396	0								0	0	0	0.29774	1	13097	13097		35.618	1.4457	1				41537	1738	27638	27750	42078	42078					0.033623579315758434
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7764892578125	2	506.776742	1011.53893	1.0987	0.00055679	0.29819	0.00015112	1.3969	0.00070791	506.7774790411882	39.081	0.46592	39.081	38.791	39.257	0					25	16	3	0	0	0	0.18416	1	15352	15352		63.534	13.509	1	309160			41538	1738	27638	27750	42079	42079					0.033623579315758434
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.77783203125	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.879	1	38.879	38.379	39.379	0								0	0	0	0.10826	1	13890	13890		69.628	21.97	1				41539	1738	27638	27750	42080	42080					0.033623579315758434
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.77642822265625	2	506.776742	1011.53893	2.9402	0.00149	-4.3156	-0.002187	-1.3754	-0.00069702	506.77510136771457	39.022	0.47244	39.022	38.903	39.376	0					23	10	4	0	0	0	0.056004	1	15393	15393		93.143	27.34	1	505480			41540	1738	27638	27750	42081	42081					0.033623579315758434
SYFKGEETL	9	Unmodified	_SYFKGEETL_					0	0	0			REV__FBXO24|p.I269F|1|0.26|ENSG00000106336|chr7:100594394-100594394|A/T|missense_variant	REV__FBXO24|p.I269F|1|0.26|ENSG00000106336|chr7:100594394-100594394|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.261962890625	2	537.261122	1072.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.306	1	30.306	29.806	30.806	0								0	0	0	0.30504	1	9644	9644		34.173	8.5985	1		+		41541	20668	27639	27751	42082	42082					-0.025662598931603497
SYFLAVWMHL	10	Unmodified	_SYFLAVWMHL_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.5498046875	3	422.882843	1265.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.667	1	17.667	17.167	18.167	0								0	0	0	0.3805	1	5139	5139		36.447	1.2947	1		+		41542	13867	27640	27752	42083	42083					0.004512355306815152
SYFSGSHMF	9	Unmodified	_SYFSGSHMF_					0	0	0		ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL;ENST00000377503.6_1_5:159680387-159681146:-|nuORF	ENSG00000135083|ENST00000257536|CCNJL	ENSG00000135083|ENST00000257536|CCNJL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7215576171875	2	531.72111	1061.42767	1.7042	0.00090617	-1.1914	-0.00063351	0.51279	0.00027266	531.7205080156089	41.719	0.26453	41.719	41.595	41.86	0					11	7	2	0	0	0	0.099922	1	16606	16606		79.451	29.426	1	54595			41543	3963	27641	27753	42084	42084					-0.10059024768020208
SYGDILHVI	9	Unmodified	_SYGDILHVI_					0	0	0		ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.77374267578125	2	508.7742	1015.53385	1.3294	0.00067634	-1.0107	-0.00051423	0.31863	0.00016211	508.7736088766225	50.069	0.23577	50.069	49.961	50.197	0					18	11	3	0	0	0	0.062676	2	19763	19763;19821		90.777	16.802	1	151210			41544	1677	27642	27754	42085;42086	42085					0.02670054068948957
SYGGRLLGNS	10	Unmodified	_SYGGRLLGNS_					0	0	0		ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;SLC4A5|p.S1062Pfs*46|1|0.26|ENSG00000188687|chr2:74224950-74224950|A/-|frameshift_variant;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5;nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-7|SLC4A5	ENST00000483195.5_1_2:74452054-74512997:-|nuORF	ENST00000483195.5_1_2:74452054-74512997:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2658081054688	2	512.26453	1022.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.265	1	38.265	37.765	38.765	0								0	0	0	0.4044	1	15005	15005		29.17	3.7199	1				41545	7265	27643	27755	42087	42087					0.00415097778056861
SYGLDILHV	9	Unmodified	_SYGLDILHV_					0	0	0		tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2774353027344	2	508.7742	1015.53385	-0.073019	-3.715E-05	1.2454	0.00063364	1.1724	0.00059649	508.77468841797986	50.041	0.085583	50.041	49.994	50.08	0					8	4	2	0	0	0	0.35045	1	19766	19766		45.952	1.8352	1	91890			41546	22743	27644	27756	42088	42088					0.026700540689603258
SYGQQSSF	8	Unmodified	_SYGQQSSF_					0	0	0		ENST00000479135.5_1_22:29673993-29684776:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;EWSR1|p.P622Lfs*4|1|0.39|ENSG00000182944|chr22:29299775-29299775|G/-|frameshift_variant;EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant;EWSR1|p.M605Tfs*41|1|0.09|ENSG00000182944|chr22:29299733-29299734|-/CCTC|frameshift_variant;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	ENST00000479135.5_1_22:29673993-29684776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.1959228515625	2	452.195782	902.377011	0.7197	0.00032545	-1.1072	-0.00050066	-0.38748	-0.00017522	452.1952674349018	29.957	0.39075	29.957	29.801	30.192	0					14	8	3	0	0	0	0.37378	1	11162	11162		73.975	5.49	1	370400			41547	6928	27645	27757	42089	42089					-0.07808230821376583
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		STK3|p.N442Ifs*2|1|0.33|ENSG00000104375|chr8:98455993-98455993|T/-|frameshift_variant;ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	STK3|p.N442Ifs*2|1|0.33|ENSG00000104375|chr8:98455993-98455993|T/-|frameshift_variant	STK3|p.N442Ifs*2|1|0.33|ENSG00000104375|chr8:98455993-98455993|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2638854980469	2	486.263468	970.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.784	1	40.784	40.284	41.284	0								0	0	0	0.0124	1	16221	16221		107.01	46.036	1				41548	2282	27646	27758	42090	42090					0.025946690402406603
SYGVSKGK	8	Unmodified	_SYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.22686767578125	2	413.226885	824.439217	-0.15711	-6.492E-05	-0.41289	-0.00017062	-0.57	-0.00023554	413.2268944183034	14.555	0.090911	14.555	14.496	14.587	0					5	3	2	0	0	0	0.43813	1	3008	3008		66.429	8.9766	1	129480			41549	5043	27647	27759	42091	42091					0.019975403176204054
SYGVSKGK	8	Unmodified	_SYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.2265930175781	2	413.226885	824.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.558	1	14.558	14.058	15.058	0								0	0	0	1.7419	1	3173	3173		67.494	20.727	1				41550	5043	27647	27759	42092	42092					0.019975403176204054
SYGVSKGK	8	Unmodified	_SYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2267150878906	2	413.226885	824.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.852	1	14.852	14.352	15.352	0								0	0	0	1.7419	1	3943	3943		37.159	0	1				41551	5043	27647	27759	42093	42093					0.019975403176204054
SYHSVVSCAAV	11	Unmodified	_SYHSVVSCAAV_					0	0	0		ENSG00000184305|ENST00000509176|CCSER1;ENST00000508086.1_1_4:91234186-91389506:+|nuORF;ENST00000514352.5_1_4:91234111-91389506:+|nuORF;nc|ENSG00000184305|Q9C0I3-2|CCSER1	ENSG00000184305|ENST00000509176|CCSER1	ENSG00000184305|ENST00000509176|CCSER1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.7691040039062	2	561.766049	1121.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.676	1	44.676	44.176	45.176	0								0	0	0	0.39048	1	17901	17901		39.253	3.6345	1				41552	7006	27648	27760	42094	42094					-0.03835395159467225
SYIGPIQNI	9	Unmodified	_SYIGPIQNI_					0	0	0		ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7753601074219	2	502.7742	1003.53385	1.1618	0.00058414	-1.263	-0.000635	-0.10117	-5.0865E-05	502.7735301162735	35.002	0.91935	35.002	34.717	35.637	0					45	18	4	0	0	0	0.1424	1	13592	13592		53.351	0	1	3613000			41553	8135	27649	27761	42095	42095					0.032220540689422705
SYIIRNPQQ	9	Unmodified	_SYIIRNPQQ_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;ENST00000519528.1_1_8:103299768-103305927:-|nuORF;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.5376281738281	3	373.536612	1117.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.318	1	16.318	15.818	16.818	0								0	0	0	0.36266	1	4639	4639		22.58	1.7425	1				41554	2292;23086	27650	27762	42096	42096					0.033916462205070275
SYILQKSTF	9	Unmodified	_SYILQKSTF_					0	0	0		BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant	BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7958984375	2	543.795132	1085.57571	1.9972	0.0010861	-0.89579	-0.00048713	1.1014	0.00059893	543.7944530519703	37.089	1.1383	37.089	36.741	37.88	0					51	35	2	0	0	0	0.14578	1	14470	14470		68.846	8.4425	1	172910			41555	315;316	27651	27763	42097	42097					0.036346097574551095
SYISFFKHIS	10	Unmodified	_SYISFFKHIS_					0	0	0		ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant;nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30	ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant	ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	614.8216552734375	2	614.821681	1227.62881	1.1077	0.00068103	-2.2843	-0.0014045	-1.1766	-0.00072343	614.8208426707268	36.899	0.40979	36.899	36.761	37.171	0					28	8	6	0	0	0	0.55603	1	14378	14378		39.253	6.4404	1	450500			41556	54	27652	27764	42098	42098					0.024099875401361714
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2859497070312	2	541.285463	1080.55637	1.0541	0.0005706	-0.53935	-0.00029194	0.5148	0.00027865	541.2853138592534	28.705	0.20565	28.705	28.616	28.822	0					21	8	4	0	0	0	0.079477	1	8971	8971		78.264	23.487	1	571460			41557	97	27653	27765	42099	42099					0.01931653466544958
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2860717773438	2	541.285463	1080.55637	0.28982	0.00015688	0.59211	0.0003205	0.88193	0.00047738	541.2857747903952	28.961	0.33381	28.961	28.835	29.169	0					23	8	4	0	0	0	0.014648	1	10280	10280		138.06	24.651	1	2904400			41558	97	27653	27765	42100	42100					0.01931653466544958
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.2875366210938	2	541.285463	1080.55637	0.1015	5.4938E-05	0.82475	0.00044643	0.92625	0.00050136	541.2859085723184	28.702	0.23612	28.702	28.621	28.857	0					23	9	4	0	0	0	0.046074	1	9260	9260		90.601	10.888	1	592280			41559	97	27653	27765	42101	42101					0.01931653466544958
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2857666015625	2	541.285463	1080.55637	2.013	0.0010896	0.35549	0.00019242	2.3685	0.0012821	541.2855546685677	28.968	0.56952	28.968	28.812	29.381	0					28	12	4	0	0	0	0.0066803	1	10663	10663		146.79	45.185	1	5161600			41560	97	27653	27765	42102	42102					0.01931653466544958
SYKEGLQSI	9	Unmodified	_SYKEGLQSI_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7675170898438	2	512.769114	1023.52368	1.2651	0.0006487	-2.3495	-0.0012048	-1.0844	-0.00055606	512.7678404440637	38.336	0.46608	38.336	38.108	38.574	0					23	16	2	0	0	0	0.18416	1	15020	15020		63.534	7.1001	1	182100	+		41561	13066	27654	27766	42103	42103					0.01285446343717922
SYKGILNLL	9	Unmodified	_SYKGILNLL_					0	0	0			REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant	REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.8074645996094	2	510.808042	1019.60153	-0.42886	-0.00021907	0.89767	0.00045854	0.46881	0.00023947	510.808452662089	45.984	0.1095	45.984	45.895	46.004	0					8	6	2	0	0	0	0.46194	1	17731	17731		36.447	1.2947	1	74767	+		41562	14914	27655	27767	42104	42104					0.09251503999746546
SYKNGFLNL	9	Unmodified	_SYKNGFLNL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2802124023438	2	528.279649	1054.54475	0.10762	5.6853E-05	0.54306	0.00028689	0.65068	0.00034374	528.2798955283382	43.734	0.15638	43.734	43.674	43.83	0					13	8	2	0	0	0	0.36135	1	16461	16461		45.972	13.16	1	136490			41563	3687	27656	27768	42105	42105					0.0196545644323578
SYKVSTSGP	9	Unmodified	_SYKVSTSGP_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.234619140625	2	463.234907	924.455261	-0.75486	-0.00034968	0.2836	0.00013137	-0.47125	-0.0002183	463.23495780595636	22.508	0.13729	22.508	22.435	22.572	0					10	4	3	0	0	0	0.047855	1	6641	6641		96.034	39.313	1	191910		+	41564	11643;10716	27657	27769	42106	42106					-0.009987982361394643
SYKVSTSGP	9	Unmodified	_SYKVSTSGP_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2347106933594	2	463.234907	924.455261	0.70582	0.00032696	-1.2616	-0.00058441	-0.55577	-0.00025745	463.2343167566461	22.702	0.21063	22.702	22.6	22.811	0					11	4	3	0	0	0	0.012936	1	7736	7736		134.77	49.85	1	1044900		+	41565	11643;10716	27657	27769	42107	42107					-0.009987982361394643
SYKVSTSGP	9	Unmodified	_SYKVSTSGP_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2344055175781	2	463.234907	924.455261	-0.33181	-0.00015371	-0.43558	-0.00020178	-0.7674	-0.00035548	463.2347773445518	22.61	0.14816	22.61	22.517	22.665	0					6	3	2	0	0	0	0.032383	1	6758	6758		106.68	47.901	1	159420		+	41566	11643;10716	27657	27769	42108	42108					-0.009987982361394643
SYKVSTSGP	9	Unmodified	_SYKVSTSGP_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2346496582031	2	463.234907	924.455261	0.76322	0.00035355	-1.1703	-0.00054211	-0.40706	-0.00018856	463.23436129568074	22.73	0.16725	22.73	22.622	22.789	0					10	3	4	0	0	0	0.026848	1	7594	7594		112.11	27.192	1	894270		+	41567	11643;10716	27657	27769	42109	42109					-0.009987982361394643
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.7828369140625	2	562.782753	1123.55095	1.2675	0.00071334	-0.64868	-0.00036507	0.61885	0.00034828	562.7825184046148	34.8	0.15561	34.8	34.701	34.856	0					11	7	2	0	0	0	0.10915	1	11391	11391		77.318	18.536	1	152650			41568	1368	27658	27770	42110	42110					-0.005880701158957891
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7835083007812	2	562.782753	1123.55095	-0.99513	-0.00056004	1.7446	0.00098184	0.74949	0.0004218	562.7840610052792	34.842	0.21546	34.842	34.771	34.986	0					20	8	3	0	0	0	0.04067	1	12381	12381		98.582	24.327	1	230650			41569	1368	27658	27770	42111	42111					-0.005880701158957891
SYLEKQVVTF	10	Unmodified	_SYLEKQVVTF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	607.3284912109375	2	607.326796	1212.63904	-0.56902	-0.00034558	1.5726	0.0009551	1.0036	0.00060952	607.327678741178	41.488	0.11628	41.488	41.444	41.561	0					9	5	2	0	0	0	0.50287	1	15757	15757		45.022	6.2161	1	76080			41570	1092	27659	27771	42112	42112					0.04122550474698983
SYLEKVRTL	9	Unmodified	_SYLEKVRTL_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.82177734375	2	554.821681	1107.62881	1.6512	0.0009161	-1.4661	-0.00081342	0.18507	0.00010268	554.8207008172956	32.796	0.25259	32.796	32.679	32.932	0					15	6	3	0	0	0	0.054723	1	12502	12502		93.598	11.357	1	291820		+	41571	645	27660	27772	42113	42113					0.07929987540137517
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2	ENST00000576872.1_1_17:4872867-4875829:-|nuORF	ENST00000576872.1_1_17:4872867-4875829:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2568359375	2	562.256371	1122.49819	1.782	0.0010019	-1.5021	-0.00084457	0.27984	0.00015734	562.2555798646932	41.56	0.35057	41.56	41.477	41.827	0					12	9	2	0	0	0	0.47473	1	16551	16551		35.152	1.6364	1	226730			41572	2531	27661	27773	42114	42114					-0.058160281787195345
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2	ENST00000576872.1_1_17:4872867-4875829:-|nuORF	ENST00000576872.1_1_17:4872867-4875829:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2568969726562	2	562.256371	1122.49819	3.4701	0.0019511	-2.4409	-0.0013724	1.0292	0.00057868	562.2550742907341	41.554	0.24893	41.554	41.428	41.677	0					11	6	3	0	0	0	0.22837	1	16543	16543		58.23	21.071	1	141270			41573	2531	27661	27773	42115	42115					-0.058160281787195345
SYLKDTKLW	9	Unmodified	_SYLKDTKLW_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.2131652832031	3	385.213246	1152.61791	0.19288	7.4301E-05	-0.41235	-0.00015884	-0.21946	-8.454E-05	385.2131004377765	37.674	0.26171	37.674	37.591	37.853	0					18	8	3	0	0	0	0.46194	1	14766	14766		36.447	8.3653	1	119240			41574	2178	27662	27774	42116	42116					0.047705851658292886
SYLKDTKLW	9	Unmodified	_SYLKDTKLW_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.21319580078125	3	385.213246	1152.61791	0.57185	0.00022028	-0.52545	-0.00020241	0.046401	1.7874E-05	385.21306631440643	37.601	0.639	37.601	37.4	38.039	0					21	13	2	0	0	0	0.27123	1	14726	14726		53.089	26.042	1	374080			41575	2178	27662	27774	42117	42117					0.047705851658292886
SYLKDTKLW	9	Unmodified	_SYLKDTKLW_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.31689453125	2	577.316232	1152.61791	1.7093	0.00098682	-0.36811	-0.00021252	1.3412	0.0007743	577.3158112947011	37.648	0.40234	37.648	37.501	37.904	0					17	8	3	0	0	0	0.014648	1	14728	14728		126.24	80.27	1	323770			41576	2178	27662	27774	42118	42118					0.047705851658292886
SYLLKPIQR	9	Unmodified	_SYLLKPIQR_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.22772216796875	3	373.229119	1116.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.087	1	28.087	27.587	28.587	0								0	0	0	0.38123	1	10250	10250		17.468	0	1				41577	7332	27663	27775	42119	42119					0.11186284156701731
SYLLRPMVF	9	Oxidation (M)	_SYLLRPM(Oxidation (M))VF_		SYLLRPM(1)VF		SYLLRPM(72)VF	0	0	1		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.3074951171875	2	571.307352	1140.60015	3.4054	0.0019455	-2.9545	-0.0016879	0.45092	0.00025761	571.3058627361254	45.244	0.27425	45.244	45.17	45.444	0					15	12	2	0	0	0	0.13267	1	18111	18111		71.877	17.101	1	122370			41578	4203	27664	27776	42120	42120		173			0.03547546639333632
SYLLRPMVF	9	Unmodified	_SYLLRPMVF_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.3113403320312	2	563.309895	1124.60524	3.4702	0.0019548	-1.5863	-0.00089357	1.8839	0.0010612	563.3090039194858	51.264	0.24142	51.264	51.152	51.393	0					32	14	3	0	0	0	0.13267	1	20074	20074		71.877	18.789	1	357920			41579	4203	27664	27777	42121	42121					0.047918505019652
SYLNSVQRL	9	Unmodified	_SYLNSVQRL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.296142578125	2	540.29583	1078.57711	0.27371	0.00014788	-2.5708	-0.001389	-2.2971	-0.0012411	540.2959090827271	36.858	0.38902	36.858	36.586	36.975	0					27	10	4	0	0	0	0.085655	1	13956	13956		82.75	18.543	1	317870			41580	4067	27665	27778	42122	42122					0.04096243846242942
SYLNSVQRL	9	Unmodified	_SYLNSVQRL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2962036132812	2	540.29583	1078.57711	1.9807	0.0010702	-3.8794	-0.002096	-1.8987	-0.0010259	540.2952899195251	36.848	0.50277	36.848	36.532	37.035	0					31	15	3	0	0	0	0.24334	1	14392	14392		56.434	3.0823	1	419900			41581	4067	27665	27778	42123	42123					0.04096243846242942
SYLPLAHMF	9	Unmodified	_SYLPLAHMF_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7736206054688	2	539.773145	1077.53174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.421	1	53.421	52.921	53.921	0								0	0	0	0.071592	1	19534	19534		79.939	30.728	1				41582	7431;11618	27666	27779	42124	42124					-0.003926979405150632
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.R768H|1|0.3|ENSG00000163359|chr2:237378830-237378830|C/T|missense_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.75146484375	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.462	1	42.462	41.962	42.962	0								0	0	0	0.088368	1	13993	13993		75.043	22.107	1				41583	5547	27667	27780	42125	42125					0.010131945177818125
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;COL6A3|p.G2207Efs*35|1|0.22|ENSG00000163359|chr2:237354908-237354908|G/-|frameshift_variant;COL6A3|p.P2319Qfs*12|1|0.06|ENSG00000163359|chr2:237348359-237348359|G/-|frameshift_variant;COL6A3|p.G1770Vfs*12|1|0.05|ENSG00000163359|chr2:237366878-237366879|-/TGGTGTAA|frameshift_variant;COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.R768H|1|0.3|ENSG00000163359|chr2:237378830-237378830|C/T|missense_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7501220703125	2	475.750724	949.486896	0.75744	0.00036035	-1.4859	-0.00070692	-0.72846	-0.00034656	475.75000301099294	42.625	0.20013	42.625	42.545	42.746	0					11	5	3	0	0	0	0.12834	1	17014	17014		72.879	21.544	1	244740			41584	5547	27667	27780	42126	42126					0.010131945177818125
SYLRRRGL	8	Unmodified	_SYLRRRGL_					0	0	0			REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.8087158203125	2	510.8067	1019.59885	3.0689	0.0015676	-0.046295	-2.3648E-05	3.0226	0.001544	510.80677372494665	45.94	0.24924	45.94	45.839	46.088	0					24	12	3	0	0	0	0.7126	1	18389	18389		31.955	0	1	296640	+		41585	20514	27668	27781	42127	42127					0.08983093385461416
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7343444824219	2	464.73474	927.454927	0.54385	0.00025275	-1.1623	-0.00054018	-0.61849	-0.00028743	464.7342563709076	41.758	0.13002	41.758	41.736	41.866	0					9	6	2	0	0	0	0.24095	1	15863	15863		56.721	6.6965	1	189910			41586	2292;23086	27669	27782	42128	42128					-0.011702179559961223
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7341613769531	2	464.73474	927.454927	0.686	0.00031881	-3.1002	-0.0014408	-2.4142	-0.001122	464.7340654947416	41.713	0.69804	41.713	41.363	42.061	0					35	29	2	0	0	0	0.062676	1	16408	16408		90.777	38.477	1	259990			41587	2292;23086	27669	27782	42129	42129					-0.011702179559961223
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7345275878906	2	464.73474	927.454927	-0.48663	-0.00022616	0.40847	0.00018983	-0.07816	-3.6324E-05	464.7348514367746	41.697	0.1615	41.697	41.606	41.768	0					6	4	2	0	0	0	0.0792	1	16609	16609		84.916	37	1	307630			41588	2292;23086	27669	27782	42130	42130					-0.011702179559961223
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7342834472656	2	464.73474	927.454927	0.71118	0.00033051	-1.6895	-0.00078518	-0.97835	-0.00045467	464.7340465249044	41.719	0.23011	41.719	41.557	41.787	0					11	6	2	0	0	0	0.0074068	1	16603	16603		147.69	73.719	1	285120			41589	2292;23086	27669	27782	42131	42131					-0.011702179559961223
SYMDLVGF	8	Unmodified	_SYMDLVGF_					0	0	0		ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.S1043Afs*2|1|0.11|ENSG00000113721|chr5:150117629-150117629|G/-|frameshift_variant;ENSG00000113721|ENST00000261799|PDGFRB	ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENST00000520579.5_1_5:149495328-149514444:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.21661376953125	2	466.215129	930.415705	2.6311	0.0012266	1.1714	0.00054611	3.8024	0.0017728	466.2155669677361	30.822	0.26527	30.822	30.697	30.962	0					12	5	3	0	0	0	0.55361	1	11484	11484		54.765	8.8127	1	802070			41590	2822	27670	27783	42132	42132					-0.052286415112121176
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(56)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7498168945312	2	549.749867	1097.48518	0.52736	0.00028992	-0.15068	-8.2838E-05	0.37668	0.00020708	549.7498108083814	44.409	0.25542	44.409	44.3	44.555	0					20	15	2	0	0	0	0.25109	1	16639	16639		55.504	16.483	1	91312			41591	6201	27671	27784	42133	42133		255			-0.059661825624516496
SYMPTVSHL	9	Unmodified	_SYMPTVSHL_					0	0	0		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7528686523438	2	517.75241	1033.49027	1.5661	0.00081083	-1.125	-0.00058245	0.4411	0.00022838	517.7518010690977	37.698	0.40234	37.698	37.501	37.904	0					22	8	4	0	0	0	0.43426	1	14729	14729		38.806	0	1	368260			41592	11636	27672	27785	42134	42134					-0.025138786998240903
SYNGKLYVF	9	Unmodified	_SYNGKLYVF_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.7827758789062	2	545.782025	1089.5495	1.9058	0.0010401	-1.1929	-0.00065105	0.71291	0.0003891	545.7819609969615	42.498	0.2782	42.498	42.426	42.704	0					20	14	2	0	0	0	0.28897	1	16667	16667		53.351	3.9099	1	79680			41593	6466	27673	27786	42135	42135					0.008303405859805935
SYNIPGKFF	9	Unmodified	_SYNIPGKFF_					0	0	0			REV__nc|ENSG00000110400|Q15223-3|NECTIN1	REV__nc|ENSG00000110400|Q15223-3|NECTIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.774658203125	2	536.776742	1071.53893	0.20562	0.00011037	-1.9467	-0.0010449	-1.7411	-0.00093457	536.7740379932434	33.376	0.44983	33.376	33.21	33.659	0					22	11	3	0	0	0	0.099922	1	12306	12306		79.451	2.1334	1	634700	+		41594	13932	27674	27787	42136	42136					0.006023579315751704
SYNPITHQL	9	Unmodified	_SYNPITHQL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.7750244140625	2	536.774731	1071.53491	0.70425	0.00037802	1.1643	0.00062496	1.8685	0.001003	536.7739033149542	33.087	0.27195	33.087	33.001	33.272	0					16	12	2	0	0	0	0.28897	1	10740	10740		51.193	14.164	1	121160			41595	5624	27675	27788	42137	42137					0.0020026843783398363
SYNPITHQL	9	Unmodified	_SYNPITHQL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7744140625	2	536.774731	1071.53491	0.066511	3.5702E-05	0.95591	0.00051311	1.0224	0.00054881	536.7750362553184	33.152	0.27669	33.152	33.064	33.341	0					15	11	2	0	0	0	0.40353	1	11107	11107		41.427	14.631	1	59992			41596	5624	27675	27788	42138	42138					0.0020026843783398363
SYNPITHQL	9	Unmodified	_SYNPITHQL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.77490234375	2	536.774731	1071.53491	0.29275	0.00015714	0.44919	0.00024112	0.74195	0.00039826	536.7751057177586	33.341	0.35749	33.341	33.203	33.561	0					19	8	3	0	0	0	0.046074	1	12739	12739		96.665	39.944	1	510790			41597	5624	27675	27788	42139	42139					0.0020026843783398363
SYNSVLAI	8	Unmodified	_SYNSVLAI_					0	0	0		ENST00000297720.9_1_8:38245501-38250143:+|nuORF;LETM2|p.L155Wfs*8|1|0.18|ENSG00000165046|chr8:38392957-38392958|-/GGATG|frameshift_variant;ENSG00000165046|ENST00000379957|LETM2	ENST00000297720.9_1_8:38245501-38250143:+|nuORF	ENST00000297720.9_1_8:38245501-38250143:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.734375	2	433.734543	865.454533	-0.26354	-0.0001143	-0.22961	-9.9591E-05	-0.49315	-0.0002139	433.73442436393776	23.688	0.16517	23.688	23.586	23.751	0					9	5	2	0	0	0	0.76283	1	6879	6879		25.45	1.2474	1	119070			41598	5753	27676	27789	42140	42140					0.0164240711480943
SYPDNFLHI	9	Unmodified	_SYPDNFLHI_					0	0	0		ENSG00000057663|ENST00000369076|ATG5;nc|ENSG00000057663|Q9H1Y0-2|ATG5	ENSG00000057663|ENST00000369076|ATG5	ENSG00000057663|ENST00000369076|ATG5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2697143554688	2	553.269281	1104.52401	3.6423	0.0020152	-2.7653	-0.0015299	0.87707	0.00048525	553.2677925019792	48.077	0.21785	48.077	47.95	48.167	0					20	11	2	0	0	0	0.39215	1	19109	19109		42.396	0	1	93481			41599	1297	27677	27790	42141	42141					-0.02407133936435457
SYPMHLPS	8	Unmodified	_SYPMHLPS_					0	0	0			REV__CC2D2A|p.F1562S|1|0.07|ENSG00000048342|chr4:15601247-15601247|T/C|missense_variant	REV__CC2D2A|p.F1562S|1|0.07|ENSG00000048342|chr4:15601247-15601247|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2220153808594	2	466.220746	930.426938	2.6317	0.001227	0.18995	8.8559E-05	2.8217	0.0013155	466.221059467254	40.322	0.89661	40.322	39.852	40.748	0					46	20	3	0	0	0	0.59411	1	15902	15902		50.025	7.5501	1	195250	+		41600	12345	27678	27791	42142	42142					-0.04105819417077328
SYPNWLKF	8	Unmodified	_SYPNWLKF_					0	0	0		ENSG00000177706|ENST00000313766|FAM20C	ENSG00000177706|ENST00000313766|FAM20C	ENSG00000177706|ENST00000313766|FAM20C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2725830078125	2	527.77146	1053.52837	0.10659	5.6254E-05	-0.77012	-0.00040645	-0.66354	-0.0003502	528.2732935998653	36.994	0.25018	36.994	36.892	37.142	0					19	7	3	0	0	0	0.61938	1	13974	13974		45.952	0	1	137290			41601	6684	27679	27792	42143	42143					0.0037437527712427254
SYPRRFSTL	9	Unmodified	_SYPRRFSTL_					0	0	0		ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.8045043945312	2	563.803823	1125.59309	0.13365	7.5352E-05	0.21089	0.0001189	0.34454	0.00019425	563.8038276636588	28.125	0.50477	28.125	28.047	28.552	0					35	18	3	0	0	0	0.41113	1	9020	9020		40.778	6.6056	1	244170			41602	9267	27680	27793	42144	42144					0.03531950083151969
SYPWSGVA	8	Unmodified	_SYPWSGVA_					0	0	0			REV__PCDHA8|p.S749P|1|0.13|ENSG00000204962|chr5:140843566-140843566|T/C|missense_variant	REV__PCDHA8|p.S749P|1|0.13|ENSG00000204962|chr5:140843566-140843566|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.705322265625	2	433.705786	865.397018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.729	1	16.729	16.229	17.229	0								0	0	0	1.7419	1	4592	4592		35.201	0	1		+		41603	21344	27681	27794	42145	42145					-0.041064350907618064
SYQKNPLKL	9	Unmodified	_SYQKNPLKL_					0	0	0		PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant;PUS7|p.K415Rfs*43|1|0.26|ENSG00000091127|chr7:105470842-105470842|T/-|frameshift_variant;ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant	PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.81640625	2	545.816399	1089.61824	0.41038	0.00022399	0.94148	0.00051387	1.3519	0.00073787	545.8175033238641	27.456	0.50904	27.456	27.114	27.623	0					18	12	2	0	0	0	0.18505	1	9603	9603		56.434	15.656	1	200750			41604	1850	27682	27795	42146	42146					0.07702004885709357
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.8098754882812	2	563.810782	1125.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.212	1	48.212	47.712	48.712	0								0	0	0	0.24544	1	17572	17572		44.377	3.599	1				41605	6059	27683	27796	42147	42147					0.04923182791549152
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.8121337890625	2	563.810782	1125.60701	1.8816	0.0010609	-0.4467	-0.00025185	1.4349	0.00080901	563.810588248054	48.231	0.22831	48.231	48.146	48.374	0					28	13	3	0	0	0	0.070005	1	18290	18290		88.177	30.366	1	124750			41606	6059	27683	27796	42148	42148					0.04923182791549152
SYQPNENKF	9	Unmodified	_SYQPNENKF_					0	0	0		FAM83B|p.R987H|1|0.23|ENSG00000168143|chr6:54941931-54941931|G/A|missense_variant;ENSG00000168143|ENST00000306858|FAM83B	FAM83B|p.R987H|1|0.23|ENSG00000168143|chr6:54941931-54941931|G/A|missense_variant	FAM83B|p.R987H|1|0.23|ENSG00000168143|chr6:54941931-54941931|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7623901367188	2	563.76182	1125.50909	0.40386	0.00022768	0.54454	0.00030699	0.9484	0.00053467	563.7622566148694	26.12	0.17369	26.12	26.031	26.204	0					13	4	4	0	0	0	0.22837	1	8982	8982		58.23	15.834	1	445810			41607	6066	27684	27797	42149	42149					-0.04864625804430034
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.2694702148438	2	581.269813	1160.52507	1.7111	0.00099462	-1.6286	-0.00094665	0.082528	4.7971E-05	581.2689324192829	36.641	0.21594	36.641	36.562	36.778	0					9	4	3	0	0	0	0.2546	1	14288	14288		47.96	3.8427	1	178880			41608	7064	27685	27798	42150	42150					-0.04876919567527693
SYRKRQEHP	9	Unmodified	_SYRKRQEHP_					0	0	0		ENST00000368474.8_1_1:154574483-154574669:-|nuORF	ENST00000368474.8_1_1:154574483-154574669:-|nuORF	ENST00000368474.8_1_1:154574483-154574669:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.81640625	2	600.815253	1199.61595	0.54475	0.0003273	0.96832	0.00058178	1.5131	0.00090908	600.815978298313	34.108	0.15496	34.108	34.037	34.192	0					8	4	2	0	0	0	0.4966	1	12688	12688		32.812	0	1	156890			41609	8926	27686	27799	42151	42151					0.02412969200599946
SYSGPYQSL	9	Unmodified	_SYSGPYQSL_					0	0	0			REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.23443603515625	2	501.232364	1000.45018	3.4868	0.0017477	-0.55583	-0.0002786	2.931	0.0014691	501.2323097164269	29.908	0.35594	29.908	29.68	30.036	0					18	13	2	0	0	0	0.55379	1	9748	9748		26.693	0	1	106280	+		41610	13002	27687	27800	42152	42152					-0.05003102098748968
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(66)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7553100585938	2	528.755149	1055.49575	1.7437	0.00092198	-1.9929	-0.0010538	-0.24922	-0.00013177	528.7544101144899	43.612	0.23338	43.612	43.53	43.763	0					18	12	3	0	0	0	0.16002	1	17046	17046		66.429	10.925	1	137450			41611	355	27688	27801	42153	42153		17			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(96)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7551879882812	2	528.755149	1055.49575	1.6311	0.00086244	-0.93035	-0.00049193	0.70072	0.00037051	528.754424352392	43.566	0.49075	43.566	43.443	43.934	0					36	15	5	0	0	0	0.047412	1	17427	17427		96.19	24.895	1	246040			41612	355	27688	27801	42154	42154		17			-0.029781999080341848
SYSMIVNNL	9	Unmodified	_SYSMIVNNL_					0	0	0		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7581787109375	2	520.757692	1039.50083	1.7	0.00088528	-1.0705	-0.00055748	0.62947	0.0003278	520.7571381510957	48.857	0.19094	48.857	48.765	48.956	0					19	11	2	0	0	0	0.099922	1	18430	18430		79.451	15.244	1	106850			41613	355	27688	27802	42155	42155					-0.017338960454253538
SYSMIVNNL	9	Unmodified	_SYSMIVNNL_					0	0	0		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7590942382812	2	520.757692	1039.50083	1.6238	0.00084563	-0.65753	-0.00034241	0.96632	0.00050322	520.7574575590336	48.752	0.30933	48.752	48.668	48.977	0					38	16	3	0	0	0	0.26904	1	19343	19343		53.351	2.016	1	400430			41614	355	27688	27802	42156	42156					-0.017338960454253538
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7354736328125	2	516.735271	1031.45599	0.31779	0.00016421	-0.027989	-1.4463E-05	0.2898	0.00014975	516.7351826465693	40.95	0.29412	40.95	40.809	41.103	0					26	12	3	0	0	0	0.032383	1	13164	13164		106.68	0	1	202000			41615	6365	27689	27803	42157	42157					-0.05848003587107087
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.735107421875	2	516.735271	1031.45599	0.040463	2.0909E-05	-0.0010759	-5.5596E-07	0.039387	2.0353E-05	516.735234447364	41.308	0.43858	41.308	41.201	41.64	0					59	21	4	0	0	0	0.012936	1	15684	15684		134.77	0	1	1147300			41616	6365	27689	27803	42158	42158					-0.05848003587107087
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.735595703125	2	516.735271	1031.45599	-0.01393	-7.198E-06	0.43935	0.00022703	0.42542	0.00021983	516.7355483719095	41.061	0.3196	41.061	40.963	41.283	0					29	19	2	0	0	0	0.18416	1	13667	13667		63.534	0	1	253160			41617	6365	27689	27803	42159	42159					-0.05848003587107087
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7354125976562	2	516.735271	1031.45599	1.5375	0.00079446	-0.84104	-0.0004346	0.69642	0.00035986	516.7348150369571	41.232	0.26636	41.232	41.145	41.411	0					15	6	3	0	0	0	0.01873	1	16396	16396		124.08	0	1	407110			41618	6365	27689	27803	42160	42160					-0.05848003587107087
SYSSFSWLM	9	Unmodified	_SYSSFSWLM_					0	0	0			REV__ENST00000378244.6_1_12:100657547-100657670:-|nuORF	REV__ENST00000378244.6_1_12:100657547-100657670:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.2421264648438	2	554.244418	1106.47428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.649	1	14.649	14.149	15.149	0								0	0	0	0.35507	1	3846	3846		24.203	3.2558	1		+		41619	18743	27690	27804	42161	42161					-0.07469584936757201
SYSSIYIP	8	Unmodified	_SYSSIYIP_					0	0	0			REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF	REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2339172363281	2	465.234376	928.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.782	1	46.782	46.282	47.282	0								0	0	0	1.7419	1	17940	17940		21.702	1.2205	1		+		41620	15225	27691	27805	42162	42162					-0.012890126050479012
SYTGFRYLM	9	Unmodified	_SYTGFRYLM_					0	0	0		ENST00000231509.7_1_5:142675048-142675096:-|nuORF	ENST00000231509.7_1_5:142675048-142675096:-|nuORF	ENST00000231509.7_1_5:142675048-142675096:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.2753295898438	2	569.273509	1136.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.605	1	34.605	34.105	35.105	0								0	0	0	0.3304	1	12906	12906		29.15	2.3535	1				41621	8203	27692	27806	42163	42163					-0.03033903291475326
SYTKGTLHPN	10	Unmodified	_SYTKGTLHPN_					0	0	0			REV__ENSG00000112902|ENST00000382496|SEMA5A	REV__ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.1927490234375	3	373.192734	1116.55637	0.35468	0.00013237	-0.36749	-0.00013714	-0.012808	-4.7798E-06	373.19252304731026	19.782	0.17598	19.782	19.693	19.869	0					8	4	2	0	0	0	0.63851	1	6038	6038		29.551	0.40119	1	785220	+		41622	14018	27693	27807	42164	42164					0.002756534665650179
SYTKGTLHPN	10	Unmodified	_SYTKGTLHPN_					0	0	0			REV__ENSG00000112902|ENST00000382496|SEMA5A	REV__ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.2859497070312	2	559.285463	1116.55637	-0.10288	-5.7542E-05	0.78934	0.00044146	0.68645	0.00038392	559.2859587045423	19.65	0.31638	19.65	19.543	19.859	0					13	6	3	0	0	0	0.24594	1	6258	6258		53.089	8.9722	1	2300800	+		41623	14018	27693	27807	42165	42165					0.002756534665650179
SYTKGTLHPN	10	Unmodified	_SYTKGTLHPN_					0	0	0			REV__ENSG00000112902|ENST00000382496|SEMA5A	REV__ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.192626953125	3	373.192734	1116.55637	3.2225	0.0012026	-3.1619	-0.00118	0.060554	2.2598E-05	373.1916548232354	19.665	0.8199	19.665	19.557	20.377	0					25	16	3	0	0	0	0.63019	1	6134	6134		30.569	0.25114	1	1356400	+		41624	14018	27693	27807	42166	42166					0.002756534665650179
SYTKIVVK	8	Unmodified	_SYTKIVVK_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2893981933594	2	469.289485	936.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.649	1	23.649	23.149	24.149	0								0	0	0	1.7419	1	7859	7859		82.305	18.999	1				41625	4434	27694	27808	42167	42167					0.09359832453981198
SYTLCLPD	8	Unmodified	_SYTLCLPD_					0	0	0			REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.2142333984375	2	456.212586	910.410619	2.4918	0.0011368	1.1593	0.00052887	3.6511	0.0016657	456.21306268109385	17.167	0.27139	17.167	17.005	17.276	0					14	5	3	0	0	0	0.65276	1	4917	4917		40.573	5.3719	1	581740	+		41626	17005	27695	27809	42168	42168					-0.04816945373852377
SYTLGVHVNQ	10	Unmodified	_SYTLGVHVNQ_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.I262*|1|0.25|ENSG00000077514|chr11:74625453-74625453|A/-|frameshift_variant;POLD3|p.R300Gfs*8|2|0.38|ENSG00000077514|chr11:74625564-74625565|AA/-|frameshift_variant	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.2859497070312	2	559.285463	1116.55637	0.51503	0.00028805	0.63902	0.00035739	1.154	0.00064544	559.2858125586038	19.782	0.41748	19.782	19.693	20.11	0					22	9	5	0	0	0	0.15477	1	6021	6021		64.207	0	1	3510200			41627	1586	27696	27810	42169	42169					0.002756534665650179
SYTLNVPPE	9	Unmodified	_SYTLNVPPE_					0	0	0			REV__ENSG00000162078|ENST00000382280|ZG16B	REV__ENSG00000162078|ENST00000382280|ZG16B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2559509277344	2	510.25584	1018.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.618	1	36.618	36.118	37.118	0								0	0	0	0.21054	1	14248	14248		49.442	5.3247	1		+		41628	15800	27697	27811	42170	42170					-0.011382425476199387
SYTRLFSNF	9	Unmodified	_SYTRLFSNF_					0	0	0		UBP1|p.F382L|1|0.26|ENSG00000153560|chr3:33400223-33400223|G/T|missense_variant;ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1	UBP1|p.F382L|1|0.26|ENSG00000153560|chr3:33400223-33400223|G/T|missense_variant	UBP1|p.F382L|1|0.26|ENSG00000153560|chr3:33400223-33400223|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.7831420898438	2	567.782556	1133.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.345	1	46.345	45.845	46.845	0								0	0	0	0.16453	1	18548	18548		56.434	10.462	1				41629	5054	27698	27812	42171	42171					-0.010874450451183293
SYTSGPGSR	9	Unmodified	_SYTSGPGSR_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.2143859863281	2	456.214506	910.414459	-0.60173	-0.00027452	0.2195	0.00010014	-0.38223	-0.00017438	456.21459121071905	17.26	0.29859	17.26	17.045	17.344	0					16	7	3	0	0	0	0.18416	1	4828	4828		63.534	21.138	1	424700		+	41630	11643	27699	27813	42172	42172					-0.044331395557492215
SYTSGPGSR	9	Unmodified	_SYTSGPGSR_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.21539306640625	2	456.214506	910.414459	-2.6351	-0.0012022	2.6527	0.0012102	0.01753	7.9973E-06	456.2156726054932	17.043	0.23167	17.043	16.873	17.105	0					9	6	2	0	0	0	0.22837	1	4153	4153		58.23	15.834	1	67604		+	41631	11643	27699	27813	42173	42173					-0.044331395557492215
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant;nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7590942382812	2	537.758746	1073.50294	0.22386	0.00012039	0.22795	0.00012258	0.45181	0.00024297	537.7589163239397	30.202	0.32887	30.202	30.076	30.405	0					21	8	4	0	0	0	0.020674	1	10852	10852		120.87	48.991	1	2822000			41632	2749	27700	27814	42174	42174					-0.030871440359533153
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant;nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7593994140625	2	537.758746	1073.50294	-0.31019	-0.00016681	0.80982	0.00043549	0.49963	0.00026868	537.7591618830363	29.957	0.24626	29.957	29.877	30.123	0					22	9	4	0	0	0	0.11898	1	9789	9789		75.043	27.128	1	728870			41633	2749	27700	27814	42175	42175					-0.030871440359533153
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant;nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7597045898438	2	537.758746	1073.50294	1.8918	0.0010174	-0.94911	-0.00051039	0.94273	0.00050696	537.7581799876193	30.191	0.32337	30.191	30.092	30.416	0					22	7	4	0	0	0	0.020674	1	11263	11263		120.87	10.749	1	3571500			41634	2749	27700	27814	42176	42176					-0.030871440359533153
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant;nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7593383789062	2	537.758746	1073.50294	0.29538	0.00015884	-0.031149	-1.6751E-05	0.26423	0.00014209	537.7590815180043	30.213	0.14037	30.213	30.122	30.263	0					6	3	2	0	0	0	0.12239	1	11280	11280		74.255	17.534	1	156610			41635	2749	27700	27814	42177	42177					-0.030871440359533153
SYVLERIK	8	Unmodified	_SYVLERIK_					0	0	0		ENSG00000108242|ENST00000285979|CYP2C18	ENSG00000108242|ENST00000285979|CYP2C18	ENSG00000108242|ENST00000285979|CYP2C18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29754638671875	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.973	1	44.973	44.473	45.473	0								0	0	0	1.7419	1	17452	17452		51.335	0	1				41636	2520	27701	27815	42178	42178					0.07810333339944009
SYVLKKKNL	9	Unmodified	_SYVLKKKNL_					0	0	0			REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	364.8974304199219	3	364.89737	1091.67028	0.093503	3.4119E-05	-0.22564	-8.2334E-05	-0.13213	-4.8215E-05	364.8972499498124	21.818	0.42813	21.818	21.737	22.165	0					27	12	3	0	0	0	0.48389	1	6065	6065		41.427	17.195	1	331480	+		41637	21900	27702	27816	42179	42179					0.12811168299458586
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7556762695312	2	522.753464	1043.49238	1.7975	0.00093966	-0.53514	-0.00027975	1.2624	0.00065991	522.7532515083138	42.297	0.19793	42.297	42.188	42.386	0					19	9	3	0	0	0	0.21419	1	16588	16588		59.931	13.979	1	158320			41638	1490	27703	27817	42180	42180					-0.027631266903881624
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.75390625	2	522.753464	1043.49238	1.6251	0.00084954	-0.26447	-0.00013825	1.3607	0.00071129	522.7533616257111	42.242	0.21311	42.242	42.17	42.383	0					14	5	3	0	0	0	0.012936	1	16848	16848		134.77	63.388	1	259180			41639	1490	27703	27817	42181	42181					-0.027631266903881624
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7548217773438	2	522.753464	1043.49238	3.4069	0.001781	-2.1882	-0.0011439	1.2188	0.00063711	522.7521795848896	42.255	0.24813	42.255	42.159	42.407	0					11	6	3	0	0	0	0.090954	1	16842	16842		81.525	14.031	1	232830			41640	1490	27703	27817	42182	42182					-0.027631266903881624
SYVWNKET	8	Unmodified	_SYVWNKET_					0	0	0			REV__ENST00000411625.2_1_9:127730575-127731109:-|nuORF	REV__ENST00000411625.2_1_9:127730575-127731109:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.749755859375	2	513.748182	1025.48181	1.4622	0.00075121	1.427	0.00073313	2.8892	0.0014843	513.7490095440907	26.386	0.86851	26.386	26.185	27.053	0					38	17	5	0	0	0	0.5676	1	9306	9306		53.351	14.545	1	3669000	+		41641	19005	27704	27818	42183	42183					-0.02991109344816323
SYYNQPVFLA	10	Unmodified	_SYYNQPVFLA_					0	0	0		SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant;ENSG00000138449|ENST00000261024|SLC40A1	SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	601.7994384765625	2	601.298039	1200.58152	0.046033	2.768E-05	0.044083	2.6507E-05	0.090116	5.4187E-05	601.7994390808751	39.921	0.46334	39.921	39.701	40.164	0					11	10	2	0	0	0	0.60076	1	15851	15851		34.173	2.6427	1	60947			41642	4263	27705	27819	42184	42184					-0.010742917308562028
TAAAAVRQM	9	Unmodified	_TAAAAVRQM_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.74517822265625	2	459.744919	917.475285	0.07756	3.5658E-05	-0.074018	-3.403E-05	0.003542	1.6284E-06	459.7449482017325	22.002	0.080509	22.002	21.954	22.034	0					4	2	2	0	0	0	0.014688	1	6157	6157		131.03	70.059	1	83943			41643	3687	27706	27820	42185	42185					0.01324674222826161
TAAAAVRQM	9	Unmodified	_TAAAAVRQM_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7448425292969	2	459.744919	917.475285	-0.91907	-0.00042254	-0.069888	-3.2131E-05	-0.98896	-0.00045467	459.74501085697545	22.043	0.12965	22.043	21.978	22.108	0					6	4	2	0	0	0	0.032052	1	6419	6419		107.01	42.8	1	171230			41644	3687	27706	27820	42186	42186					0.01324674222826161
TAAAVAAVGA	10	Unmodified	_TAAAVAAVGA_					0	0	0			REV__ENST00000491165.5_2_3:113396224-113415451:-|nuORF	REV__ENST00000491165.5_2_3:113396224-113415451:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.22760009765625	2	401.226885	800.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.868	1	15.868	15.368	16.368	0								0	0	0	0.28441	1	3643	3643		53.351	0	1		+		41645	19718	27707	27821	42187	42187					0.031015403176070322
TAAAVRLPL	9	Unmodified	_TAAAVRLPL_					0	0	0			REV__BACE2|p.P102Rfs*25|3|0.35|ENSG00000182240|chr21:41168562-41168562|C/-|frameshift_variant	REV__BACE2|p.P102Rfs*25|3|0.35|ENSG00000182240|chr21:41168562-41168562|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.28704833984375	2	456.287277	910.560001	0.1158	5.2839E-05	-0.33385	-0.00015233	-0.21805	-9.9491E-05	456.28700149236414	32.219	0.29531	32.219	32.048	32.343	0					12	8	2	0	0	0	0.54267	1	11190	11190		27.882	1.1893	1	85352	+		41646	12272	27708	27822	42188	42188					0.10114368031076992
TAADHFILL	9	Unmodified	_TAADHFILL_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|185|2|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|185|2|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|185|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7744140625	2	500.776742	999.538931	0.15297	7.6602E-05	-3.5597	-0.0017826	-3.4067	-0.001706	500.774684644771	33.306	0.24511	33.306	33.218	33.463	0					11	7	2	0	0	0	0.45358	1	11681	11681		37.159	4.3467	1	140920			41647	11294	27709	27823	42189	42189					0.03914357931569157
TAADIFKQY	9	Unmodified	_TAADIFKQY_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7723999023438	2	528.771657	1055.52876	0.50455	0.00026679	0.21619	0.00011432	0.72074	0.00038111	528.7718384538073	39.339	0.20874	39.339	39.263	39.472	0					24	12	3	0	0	0	0.037924	1	12772	12772		101.25	26.998	1	216000			41648	2145	27710	27824	42190	42190					0.00321750206330762
TAADIFKQY	9	Unmodified	_TAADIFKQY_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7718505859375	2	528.771657	1055.52876	0.11	5.8165E-05	0.48207	0.0002549	0.59207	0.00031307	528.7719291294968	39.679	0.36555	39.679	39.573	39.939	0					37	14	3	0	0	0	0.037924	1	15089	15089		101.25	37.045	1	1428100			41649	2145	27710	27824	42191	42191					0.00321750206330762
TAADIFKQY	9	Unmodified	_TAADIFKQY_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.772705078125	2	528.771657	1055.52876	1.2427	0.00065709	0.99103	0.00052403	2.2337	0.0011811	528.7722734335618	39.458	0.18571	39.458	39.366	39.552	0					18	10	2	0	0	0	0.01873	1	14049	14049		124.08	55.293	1	147900			41650	2145	27710	27824	42192	42192					0.00321750206330762
TAADIFKQY	9	Unmodified	_TAADIFKQY_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7720336914062	2	528.771657	1055.52876	1.6295	0.00086163	-0.50987	-0.0002696	1.1196	0.00059202	528.7712741122272	39.567	0.36615	39.567	39.469	39.835	0					20	8	3	0	0	0	0.00324	1	15656	15656		167.23	74.033	1	2395700			41651	2145	27710	27824	42193	42193					0.00321750206330762
TAADTAVYY	9	Unmodified	_TAADTAVYY_					0	0	0		nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000276775|A0A075B6R2|IGHV4-4;nc|ENSG00000211970|A0A0C4DH41|IGHV4-61;nc|ENSG00000211956|P06331|IGHV4-34;nc|ENSG00000231475|P0DP07|IGHV4-31;nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2;nc|ENSG00000211959|P01824|IGHV4-39	nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000231475|P0DP07|IGHV4-31	nc|ENSG00000224373|P01825|IGHV4-59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.72735595703125	2	487.726915	973.439277	1.2654	0.00061717	-0.99543	-0.0004855	0.26997	0.00013167	487.72637704296886	36.538	0.28635	36.538	36.452	36.739	0					31	15	3	0	0	0	0.077948	1	11971	11971		85.359	13.982	1	406740			41652	11755;11756	27711	27825	42194	42194					-0.04850504473051842
TAADTAVYY	9	Unmodified	_TAADTAVYY_					0	0	0		nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000276775|A0A075B6R2|IGHV4-4;nc|ENSG00000211970|A0A0C4DH41|IGHV4-61;nc|ENSG00000211956|P06331|IGHV4-34;nc|ENSG00000231475|P0DP07|IGHV4-31;nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2;nc|ENSG00000211959|P01824|IGHV4-39	nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000231475|P0DP07|IGHV4-31	nc|ENSG00000224373|P01825|IGHV4-59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7267761230469	2	487.726915	973.439277	0.39799	0.00019411	-0.54578	-0.00026619	-0.14779	-7.2082E-05	487.72656108921393	36.836	0.33563	36.836	36.724	37.059	0					30	9	4	0	0	0	0.05357	1	13899	13899		94.006	33.712	1	742730			41653	11755;11756	27711	27825	42195	42195					-0.04850504473051842
TAAEEELRQ	9	Unmodified	_TAAEEELRQ_					0	0	0		TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant;nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant	TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7570190429688	2	523.759278	1045.504	0.089915	4.7094E-05	-4.3984	-0.0023037	-4.3085	-0.0022566	523.7571688298583	18.245	0.27216	18.245	18.159	18.431	0					9	6	2	0	0	0	0.20551	1	5313	5313		60.972	2.742	1	644110			41654	4952	27712	27826	42196	42196					-0.016929296670696203
TAAETHYTY	9	Unmodified	_TAAETHYTY_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|3|0.3|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7354736328125	2	528.735271	1055.45599	0.5092	0.00026923	0.31054	0.00016419	0.81974	0.00043343	528.7354748097179	24.505	0.22971	24.505	24.424	24.653	0					11	6	2	0	0	0	0.023074	1	7234	7234		116.9	63.967	1	225380			41655	5283	27713	27827	42197	42197					-0.06952003587070976
TAAETHYTY	9	Unmodified	_TAAETHYTY_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|3|0.3|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7355346679688	2	528.735271	1055.45599	0.10981	5.8062E-05	0.43832	0.00023175	0.54813	0.00028981	528.7355116665256	24.781	0.41635	24.781	24.643	25.06	0					22	10	3	0	0	0	0.023074	1	8373	8373		116.9	65.568	1	1735300			41656	5283	27713	27827	42198	42198					-0.06952003587070976
TAAETHYTY	9	Unmodified	_TAAETHYTY_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|3|0.3|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7352294921875	2	528.735271	1055.45599	0.1519	8.0316E-05	0.51041	0.00026987	0.66231	0.00035019	528.7353760465642	24.501	0.22031	24.501	24.435	24.655	0					17	7	3	0	0	0	0.071197	1	7502	7502		87.754	43.638	1	439470			41657	5283	27713	27827	42199	42199					-0.06952003587070976
TAAETHYTY	9	Unmodified	_TAAETHYTY_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|3|0.3|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7356567382812	2	528.735271	1055.45599	1.7437	0.00092194	-0.96227	-0.00050878	0.7814	0.00041315	528.7346735243983	24.755	0.36299	24.755	24.645	25.008	0					20	7	4	0	0	0	0.015338	1	8711	8711		129.68	82.025	1	2619800			41658	5283	27713	27827	42200	42200					-0.06952003587070976
TAAETHYTY	9	Unmodified	_TAAETHYTY_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|3|0.3|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7354125976562	2	528.735271	1055.45599	-1.1748	-0.00062118	1.6794	0.00088794	0.50453	0.00026677	528.7361278211962	24.588	0.19443	24.588	24.495	24.689	0					12	4	4	0	0	0	0.098791	1	7677	7677		79.713	32.055	1	453120			41659	5283	27713	27827	42201	42201					-0.06952003587070976
TAAEVQQVL	9	Unmodified	_TAAEVQQVL_					0	0	0		ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7636413574219	2	479.763832	957.513111	-2.9261	-0.0014039	2.5275	0.0012126	-0.39861	-0.00019124	479.7649454373124	37.755	0.23858	37.755	37.661	37.899	0					16	11	2	0	0	0	0.16806	1	13513	13513		65.465	5.3471	1	168090			41660	2285;2211	27714	27828	42202	42202					0.032654636892857525
TAAFLHFF	8	Unmodified	_TAAFLHFF_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2450866699219	2	477.247621	952.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.27	1	36.27	35.77	36.77	0								0	0	0	1.7419	1	14079	14079		57.453	7.4281	1				41661	3233	27715	27829	42203	42203					0.0025472107694213264
TAAGAECHYP	10	Unmodified	_TAAGAECHYP_					0	0	0			REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2179870605469	2	510.216192	1018.41783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.244	1	29.244	28.744	29.744	0								0	0	0	0.29716	1	9812	9812		51.335	3.6781	1		+		41662	13203	27716	27830	42204	42204					-0.09064212773409963
TAAGHRLR	8	Unmodified	_TAAGHRLR_					0	0	0		ENST00000259351.9_1_9:129677065-129724587:+|nuORF	ENST00000259351.9_1_9:129677065-129724587:+|nuORF	ENST00000259351.9_1_9:129677065-129724587:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	441.2583923339844	2	441.256843	880.499132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.584	1	23.584	23.084	24.084	0								0	0	0	1.7419	1	7106	7106		55.504	9.5523	1				41663	8283	27717	27831	42205	42205					0.05410275771498618
TAAGLMHTF	9	Unmodified	_TAAGLMHTF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.7339172363281	2	474.73402	947.453487	-0.011505	-5.462E-06	-0.019745	-9.3738E-06	-0.031251	-1.4836E-05	474.7338511868811	36.924	0.24213	36.924	36.831	37.074	0					19	12	2	0	0	0	0.063823	1	12092	12092		90.37	37.018	1	152450			41664	9616	27718	27832	42206	42206					-0.02234130525744149
TAAGLMHTF	9	Unmodified	_TAAGLMHTF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7336120605469	2	474.73402	947.453487	0.30084	0.00014282	-1.0297	-0.00048885	-0.7289	-0.00034603	474.7335179618951	37.225	0.33066	37.225	37.104	37.434	0					24	9	3	0	0	0	0.00012896	1	14088	14088		191.63	85.211	1	756710			41665	9616	27718	27832	42207	42207					-0.02234130525744149
TAAGLMHTF	9	Unmodified	_TAAGLMHTF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.2359313964844	2	474.73402	947.453487	-1.5824	-0.00075121	0.97155	0.00046123	-0.61082	-0.00028998	474.7344976923112	36.988	0.2804	36.988	36.888	37.168	0					30	15	3	0	0	0	0.17854	1	12507	12507		64.207	10.856	1	193200			41666	9616	27718	27832	42208	42208					-0.02234130525744149
TAAGLMHTF	9	Unmodified	_TAAGLMHTF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.73370361328125	2	474.73402	947.453487	0.61355	0.00029127	-1.7063	-0.00081005	-1.0928	-0.00051878	474.7332723095109	37.196	0.44808	37.196	37.087	37.535	0					32	13	3	0	0	0	0.0041499	1	14526	14526		161.9	76.539	1	1617400			41667	9616	27718	27832	42209	42209					-0.02234130525744149
TAAGLMHTF	9	Unmodified	_TAAGLMHTF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7336120605469	2	474.73402	947.453487	-0.44495	-0.00021123	0.25601	0.00012154	-0.18894	-8.9696E-05	474.7341752147342	36.961	0.22688	36.961	36.892	37.119	0					19	9	3	0	0	0	0.023074	1	13224	13224		116.9	53.597	1	193110			41668	9616	27718	27832	42210	42210					-0.02234130525744149
TAAGLMHTF	9	Unmodified	_TAAGLMHTF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.73419189453125	2	474.73402	947.453487	-2.6281	-0.0012476	2.1226	0.0010077	-0.50547	-0.00023997	474.73508909530995	36.972	0.22876	36.972	36.883	37.112	0					18	9	3	0	0	0	0.03984	1	13230	13230		99.375	25.4	1	203900			41669	9616	27718	27832	42211	42211					-0.02234130525744149
TAAGLMHTF	9	Unmodified	_TAAGLMHTF_					0	0	0		ENST00000446112.1_1_X:72989760-72990255:+|nuORF;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	ENST00000446112.1_1_X:72989760-72990255:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.733642578125	2	474.73402	947.453487	0.71599	0.0003399	-1.3434	-0.00063776	-0.62742	-0.00029786	474.7333071157138	37.162	0.70642	37.162	36.761	37.467	0					30	14	3	0	0	0	0.0041499	1	14491	14491		161.9	90.603	1	1744700			41670	9616	27718	27832	42212	42212					-0.02234130525744149
TAAGNTISM	9	Unmodified	_TAAGNTISM_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2077331542969	2	433.207835	864.401117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.443	1	31.443	30.943	31.943	0								0	0	0	0.029874	1	11447	11447		95.815	13.51	1				41671	3684	27719	27833	42213	42213					-0.03650713659351368
TAAGNTISM	9	Unmodified	_TAAGNTISM_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.207763671875	2	433.207835	864.401117	-0.49607	-0.0002149	-0.23354	-0.00010117	-0.72962	-0.00031608	433.2080013978512	31.429	0.26679	31.429	31.319	31.586	0					12	5	3	0	0	0	0.026538	1	11733	11733		112.41	23.768	1	245990			41672	3684	27719	27833	42214	42214					-0.03650713659351368
TAAGTLIAK	9	Unmodified	_TAAGTLIAK_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.25787353515625	2	423.258185	844.501818	0.36014	0.00015243	-1.2903	-0.00054611	-0.93012	-0.00039368	423.2574735937323	23.807	0.24441	23.807	23.704	23.949	0					8	5	3	0	0	0	0.063171	1	7923	7923		90.601	17.722	1	138620			41673	6804	27720	27834	42215	42215					0.07334686385797795
TAAGTLIAK	9	Unmodified	_TAAGTLIAK_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.2578430175781	2	423.258185	844.501818	-0.026096	-1.1045E-05	-0.11153	-4.7208E-05	-0.13763	-5.8253E-05	423.25814390198167	33.245	0.24498	33.245	33.147	33.392	0					17	7	3	0	0	0	0.12239	1	11629	11629		74.255	0	1	262240			41674	6804	27720	27834	42216	42216					0.07334686385797795
TAAHDDPQQLL	11	Unmodified	_TAAHDDPQQLL_					0	0	0			REV__ENSG00000100644|ENST00000337138|HIF1A	REV__ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	604.7988891601562	2	604.798934	1207.58332	0.14891	9.0061E-05	-0.48221	-0.00029164	-0.3333	-0.00020158	604.7986910488314	30.952	0.15153	30.952	30.893	31.044	0					10	6	2	0	0	0	0.69524	1	9910	9910		28.081	5.5018	1	72301	+		41675	13568	27721	27835	42217	42217					-0.012172827129006691
TAAHFIEY	8	Unmodified	_TAAHFIEY_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ;ENST00000450600.1_1_7:56296937-56297204:-|nuORF	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2323303222656	2	476.232168	950.449782	-0.05758	-2.7421E-05	-0.086301	-4.1099E-05	-0.14388	-6.8521E-05	476.2320401583407	34.337	0.50593	34.337	34.235	34.741	0					37	15	4	0	0	0	0.68754	1	12120	12120		35.201	5.3592	1	617940			41676	2482	27722	27836	42218	42218					-0.027424770279594668
TAAHKKLCLKM	11	Unmodified	_TAAHKKLCLKM_					0	0	0		nc|ENSG00000141161|Q8IWX7|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7|UNC45B	nc|ENSG00000141161|Q8IWX7|UNC45B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.23846435546875	3	415.238633	1242.69407	0.56285	0.00023372	-0.9294	-0.00038592	-0.36656	-0.00015221	415.2383178974327	30.326	0.15635	30.326	30.227	30.383	0					7	5	2	0	0	0	0.65797	1	9648	9648		31.634	9.0727	1	90926			41677	4431	27723	27837	42219	42219					0.08242942469951231
TAAIDILRQ	9	Unmodified	_TAAIDILRQ_					0	0	0		ENST00000485934.1_1_9:116137738-116139093:-|nuORF;ENST00000374180.3_1_9:116136757-116139093:-|nuORF	ENST00000485934.1_1_9:116137738-116139093:-|nuORF	ENST00000485934.1_1_9:116137738-116139093:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7928771972656	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.753	1	14.753	14.253	15.253	0								0	0	0	0.3119	1	3896	3896		32.812	0	1				41678	9005	27724	27838	42220	42220					0.07149145334574314
TAAIRDTLTQ	10	Unmodified	_TAAIRDTLTQ_					0	0	0			REV__SNAP91|p.A13T|1|0.39|ENSG00000065609|chr6:83707891-83707891|C/T|missense_variant	REV__SNAP91|p.A13T|1|0.39|ENSG00000065609|chr6:83707891-83707891|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3008422851562	2	545.29857	1088.58259	3.7292	0.0020335	0.70365	0.0003837	4.4329	0.0024172	545.2987936342628	33.475	0.46616	33.475	33.167	33.633	0					20	9	3	0	0	0	0.46989	1	12738	12738		48.602	2.1448	1	1750700	+		41679	21548	27725	27839	42221	42221					0.04183922638026161
TAAKKHGTK	9	Unmodified	_TAAKKHGTK_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.280029296875	2	471.279983	940.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.024	1	15.024	14.524	15.524	0								0	0	0	0.3428	1	3791	3791		26.693	0	1				41680	2119	27726	27840	42222	42222					0.07276295882957129
TAAKSITKK	9	Unmodified	_TAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2972106933594	2	474.297842	946.581131	-0.26563	-0.00012599	-1.045	-0.00049564	-1.3106	-0.00062163	474.29742633077876	12.155	0.087352	12.155	12.119	12.206	0					9	5	2	0	0	0	0.095583	1	2296	2296		80.455	34.482	1	93218			41681	3860	27727	27841	42223	42223					0.10570333339933313
TAAKSITKK	9	Unmodified	_TAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.29754638671875	2	474.297842	946.581131	-0.48089	-0.00022809	-0.29548	-0.00014014	-0.77637	-0.00036823	474.2976622994201	12.381	0.33765	12.381	12.293	12.63	0					25	11	4	0	0	0	0.014648	1	2582	2582		131.12	59.238	1	2459400			41682	3860	27727	27841	42224	42224					0.10570333339933313
TAAKSITKK	9	Unmodified	_TAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2982482910156	2	474.297842	946.581131	-0.46602	-0.00022103	1.0849	0.00051455	0.61884	0.00029351	474.29838182491363	12.122	0.071527	12.122	12.087	12.159	0					7	4	2	0	0	0	0.0088974	1	2335	2335		143.37	69.119	1	204400			41683	3860	27727	27841	42225	42225					0.10570333339933313
TAALADGIKS	10	Unmodified	_TAALADGIKS_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7637634277344	2	473.763832	945.513111	-0.018065	-8.5585E-06	-0.65698	-0.00031125	-0.67505	-0.00031981	473.7635159078185	20.733	0.37035	20.733	20.52	20.89	0					36	12	4	0	0	0	0.39827	1	5539	5539		56.434	1.6575	1	2690100			41684	2381	27728	27842	42226	42226					0.038174636892904346
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.7345886230469	2	467.735074	933.455596	-0.43552	-0.00020371	-0.066099	-3.0917E-05	-0.50162	-0.00023463	467.7349992932593	24.212	0.15512	24.212	24.12	24.275	0					10	5	2	0	0	0	0.047412	1	7102	7102		96.19	56.938	1	246040			41685	7741	27729	27843	42227	42227					-0.013793785162874883
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.73492431640625	2	467.735074	933.455596	-0.64929	-0.0003037	1.2145	0.00056807	0.56521	0.00026437	467.73517179736757	24.484	0.36238	24.484	24.294	24.656	0					22	8	4	0	0	0	0.023074	1	8257	8257		116.9	54.796	1	1341200			41686	7741	27729	27843	42228	42228					-0.013793785162874883
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.73480224609375	2	467.735074	933.455596	-1.0523	-0.0004922	0.95167	0.00044513	-0.10063	-4.7068E-05	467.73523899961253	24.247	0.29833	24.247	24.053	24.352	0					20	9	3	0	0	0	0.05357	2	7405	7363;7405		94.006	24.379	1	331260			41687	7741	27729	27843	42229;42230	42230					-0.013793785162874883
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.73480224609375	2	467.735074	933.455596	0.64335	0.00030092	-0.7506	-0.00035108	-0.10725	-5.0163E-05	467.73450925629425	24.458	0.46555	24.458	24.246	24.712	0					22	9	4	0	0	0	0.012915	1	8569	8569		134.81	70.603	1	2596400			41688	7741	27729	27843	42231	42231					-0.013793785162874883
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7349853515625	2	467.735074	933.455596	-0.7273	-0.00034019	0.58209	0.00027226	-0.14522	-6.7923E-05	467.7352719920522	24.266	0.23093	24.266	24.124	24.355	0					8	5	2	0	0	0	0.020824	1	7550	7550		120.62	60.503	1	189910			41689	7741	27729	27843	42232	42232					-0.013793785162874883
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.73480224609375	2	467.735074	933.455596	-2.185	-0.001022	1.9804	0.00092631	-0.20454	-9.5672E-05	467.7357448234719	24.294	0.27594	24.294	24.11	24.386	0					15	6	3	0	0	0	0.0792	1	7544	7544		84.916	40.538	1	285710			41690	7741	27729	27843	42233	42233					-0.013793785162874883
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7347717285156	2	467.735074	933.455596	0.59974	0.00028052	-0.74215	-0.00034713	-0.14241	-6.6612E-05	467.734501350972	24.422	0.41496	24.422	24.213	24.628	0					22	8	4	0	0	0	0.019882	1	8434	8434		122.18	70.841	1	2303700			41691	7741	27729	27843	42234	42234					-0.013793785162874883
TAALAHTSY	9	Unmodified	_TAALAHTSY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7348937988281	2	467.735074	933.455596	2.6379	0.0012338	-2.0855	-0.00097545	0.55241	0.00025838	467.7336602724753	24.405	0.41574	24.405	24.196	24.611	0					24	8	4	0	0	0	0.0406	1	8428	8428		98.629	52.657	1	1743400			41692	7741	27729	27843	42235	42235					-0.013793785162874883
TAALITVDK	9	Unmodified	_TAALITVDK_					0	0	0			REV__ENSG00000145375|ENST00000274008|SPATA5	REV__ENSG00000145375|ENST00000274008|SPATA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2764892578125	2	466.276575	930.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.773	1	29.773	29.273	30.273	0								0	0	0	0.30504	1	9425	9425		34.173	2.2177	1		+		41693	15269	27730	27844	42236	42236					0.07054938211717854
TAANTISIP	9	Unmodified	_TAANTISIP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2447204589844	2	444.245275	886.475997	-1.1587	-0.00051474	0.53207	0.00023637	-0.62661	-0.00027837	444.2455091801569	20.985	0.41157	20.985	20.659	21.071	0					29	13	3	0	0	0	0.50858	1	5872	5872		31.53	4.8369	1	315730	+		41694	14858	27731	27845	42237	42237					0.028217921435157223
TAAPGRFSF	9	Unmodified	_TAAPGRFSF_					0	0	0		DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant;ENST00000565758.1_1_16:30441199-30441310:-|nuORF;DCTPP1|p.Q82Kfs*25|1|0.35|ENSG00000179958|chr16:30424502-30424502|G/-|frameshift_variant;ENSG00000179958|ENST00000319285|DCTPP1	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2448425292969	2	477.245609	952.476666	0.0078807	3.7611E-06	-0.26251	-0.00012528	-0.25463	-0.00012152	477.2452842001269	36.07	0.28485	36.07	35.956	36.241	0					17	13	2	0	0	0	0.24334	1	11832	11832		56.434	20.816	1	79387			41695	754	27732	27846	42238	42238					-0.0014736841676494805
TAAPGRFSF	9	Unmodified	_TAAPGRFSF_					0	0	0		DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant;ENST00000565758.1_1_16:30441199-30441310:-|nuORF;DCTPP1|p.Q82Kfs*25|1|0.35|ENSG00000179958|chr16:30424502-30424502|G/-|frameshift_variant;ENSG00000179958|ENST00000319285|DCTPP1	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.24542236328125	2	477.245609	952.476666	0.39346	0.00018778	-0.91218	-0.00043533	-0.51872	-0.00024756	477.2454922178957	36.344	0.47476	36.344	36.134	36.608	0					29	13	4	0	0	0	0.3269	1	13697	13697		47.96	10.8	1	508880			41696	754	27732	27846	42239	42239					-0.0014736841676494805
TAAPGRFSF	9	Unmodified	_TAAPGRFSF_					0	0	0		DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant;ENST00000565758.1_1_16:30441199-30441310:-|nuORF;DCTPP1|p.Q82Kfs*25|1|0.35|ENSG00000179958|chr16:30424502-30424502|G/-|frameshift_variant;ENSG00000179958|ENST00000319285|DCTPP1	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2453918457031	2	477.245609	952.476666	0.64065	0.00030575	-0.94772	-0.00045229	-0.30707	-0.00014655	477.24517585902765	36.359	0.40002	36.359	36.172	36.572	0					22	11	3	0	0	0	0.38666	1	14130	14130		42.864	4.0581	1	603290			41697	754	27732	27846	42240	42240					-0.0014736841676494805
TAAPGRFSF	9	Unmodified	_TAAPGRFSF_					0	0	0		DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant;ENST00000565758.1_1_16:30441199-30441310:-|nuORF;DCTPP1|p.Q82Kfs*25|1|0.35|ENSG00000179958|chr16:30424502-30424502|G/-|frameshift_variant;ENSG00000179958|ENST00000319285|DCTPP1	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	DCTPP1|p.E15D|1|0.42|ENSG00000179958|chr16:30429936-30429936|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2456970214844	2	477.245609	952.476666	0.81981	0.00039125	-0.89815	-0.00042864	-0.078341	-3.7388E-05	477.24524721805005	36.277	0.51475	36.277	36.064	36.579	0					22	10	3	0	0	0	0.34452	1	14069	14069		46.457	5.8842	1	1078400			41698	754	27732	27846	42241	42241					-0.0014736841676494805
TAAPPAQPL	9	Unmodified	_TAAPPAQPL_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.2424011230469	2	433.242535	864.470518	0.19064	8.2595E-05	-0.19753	-8.5577E-05	-0.0068816	-2.9814E-06	433.24238304337666	30.026	0.65001	30.026	29.62	30.27	0					38	25	2	0	0	0	0.30951	1	9433	9433		49.442	6.9671	1	141200			41699	7686	27733	27847	42242	42242					0.03286113351691711
TAAPPAQPL	9	Unmodified	_TAAPPAQPL_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.2425231933594	2	433.242535	864.470518	-0.46354	-0.00020083	0.015589	6.754E-06	-0.44795	-0.00019407	433.24252472131917	30.196	0.88986	30.196	29.818	30.708	0					33	19	2	0	0	0	0.24095	1	11336	11336		56.721	7.2795	1	188890			41700	7686	27733	27847	42243	42243					0.03286113351691711
TAAPPAQPL	9	Unmodified	_TAAPPAQPL_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.2428283691406	2	433.242535	864.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.961	1	29.961	29.461	30.461	0								0	0	0	0.28996	1	10144	10144		37.159	8.0096	1				41701	7686	27733	27847	42244	42244					0.03286113351691711
TAAPPAQPL	9	Unmodified	_TAAPPAQPL_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.242431640625	2	433.242535	864.470518	-0.49719	-0.00021541	0.1978	8.5695E-05	-0.29939	-0.00012971	433.24260416037606	30.155	1.0488	30.155	29.698	30.747	0					45	21	3	0	0	0	0.22377	2	11023	11023;11212		58.782	14.665	1	825790			41702	7686	27733	27847	42245;42246	42245					0.03286113351691711
TAAPSLKNAAF	11	Unmodified	_TAAPSLKNAAF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000468818.1_1_1:111992163-111998855:+|nuORF;ENST00000369721.8_1_1:111992139-111998768:+|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.799072265625	2	545.798206	1089.58186	1.8643	0.0010175	-0.74539	-0.00040683	1.1189	0.00061071	545.7977227433927	34.259	0.23988	34.259	34.143	34.383	0					8	6	2	0	0	0	0.44025	1	12740	12740		48.602	6.2054	1	185100			41703	2982	27734	27848	42247	42247					0.04065127988974382
TAAPVEVSTTY	11	Unmodified	_TAAPVEVSTTY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7857055664062	2	569.784961	1137.55537	1.7541	0.00099947	0.2472	0.00014085	2.0013	0.0011403	569.7848749610714	36.741	0.20078	36.741	36.636	36.837	0					8	5	2	0	0	0	0.33926	1	13879	13879		58.23	7.0372	1	44273			41704	7741	27735	27849	42248	42248					-0.00790605692986901
TAAPVEVSTTY	11	Unmodified	_TAAPVEVSTTY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7850952148438	2	569.784961	1137.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.716	1	36.716	36.216	37.216	0								0	0	0	0.39691	1	14293	14293		37.812	4.9991	1				41705	7741	27735	27849	42249	42249					-0.00790605692986901
TAAPVSRGR	9	Unmodified	_TAAPVSRGR_					0	0	0			REV__MARCKSL1|p.E111Gfs*87|1|0.17|ENSG00000175130|chr1:32334853-32334853|T/-|frameshift_variant	REV__MARCKSL1|p.E111Gfs*87|1|0.17|ENSG00000175130|chr1:32334853-32334853|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7618408203125	2	457.761958	913.509363	-1.0075	-0.00046117	0.77279	0.00035375	-0.23466	-0.00010742	457.76237354243295	14.828	0.083716	14.828	14.778	14.862	0					5	3	2	0	0	0	0.17854	1	3270	3270		64.207	7.4862	1	89420	+		41706	20866	27736	27850	42250	42250					0.049148387060995447
TAAPVVPEL	9	Unmodified	_TAAPVVPEL_					0	0	0		ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant;ENSG00000134318|ENST00000315872|ROCK2;ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	ROCK2|p.K1351Sfs*17|1|0.34|ENSG00000134318|chr2:11192259-11192259|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.7586669921875	2	448.758018	895.501483	-0.40129	-0.00018008	1.5661	0.00070282	1.1649	0.00052274	448.75875952870217	45.32	0.23588	45.32	45.202	45.438	0					13	10	2	0	0	0	0.2873	1	18137	18137		51.335	10.763	1	76389			41707	3913	27737	27851	42251	42251					0.04955266665945146
TAAQGLGPSL	10	Unmodified	_TAAQGLGPSL_					0	0	0		ENST00000375001.7_1_9:101763171-101765741:+|nuORF	ENST00000375001.7_1_9:101763171-101765741:+|nuORF	ENST00000375001.7_1_9:101763171-101765741:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.750732421875	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.67	1	33.67	33.17	34.17	0								0	0	0	0.074065	1	12905	12905		85.161	8.3867	1				41708	9022	27738	27852	42252	42252					0.026691945178072274
TAARAQNR	8	Unmodified	_TAARAQNR_					0	0	0			REV__ENST00000532256.1_1_11:14541836-14541920:-|nuORF	REV__ENST00000532256.1_1_11:14541836-14541920:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.24517822265625	2	444.243932	886.473312	2.5953	0.0011529	0.10616	4.716E-05	2.7014	0.0012001	444.24396283106876	21.179	0.76178	21.179	20.709	21.471	0					30	15	4	0	0	0	0.7126	1	6788	6788		31.955	2.8053	1	822070	+		41709	20017	27739	27853	42253	42253					0.025533815292305917
TAARAWAL	8	Unmodified	_TAARAWAL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.24261474609375	2	430.24287	858.471186	0.1846	7.9421E-05	-0.21699	-9.336E-05	-0.032398	-1.3939E-05	430.24288948558944	35.163	0.23658	35.163	35.099	35.336	0					17	11	2	0	0	0	0.67394	1	11513	11513		37.159	0.13063	1	89521			41710	7963	27740	27854	42254	42254					0.03628952791405027
TAARAWAL	8	Unmodified	_TAARAWAL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2423400878906	2	430.24287	858.471186	-0.87539	-0.00037663	0.57905	0.00024913	-0.29633	-0.0001275	430.2431326484651	35.214	0.22597	35.214	35.174	35.4	0					15	10	2	0	0	0	0.61938	1	11902	11902		45.952	45.952	1	163290			41711	7963	27740	27854	42255	42255					0.03628952791405027
TAARAWAL	8	Unmodified	_TAARAWAL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.24261474609375	2	430.24287	858.471186	0.96568	0.00041548	-1.3371	-0.00057529	-0.37144	-0.00015981	430.2422984555514	35.463	0.40681	35.463	35.352	35.759	0					24	11	3	0	0	0	0.24915	1	13740	13740		102.77	45.321	1	583480			41712	7963	27740	27854	42256	42256					0.03628952791405027
TAARPALVTP	10	Unmodified	_TAARPALVTP_					0	0	0			REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	332.8659973144531	3	332.86607	995.57638	-1.9069	-0.00063475	1.8425	0.0006133	-0.064426	-2.1445E-05	332.866694518197	23.631	0.17104	23.631	23.542	23.713	0					10	4	3	0	0	0	0.72365	1	7252	7252		23.378	12.791	1	142780	+		41713	16106	27741	27855	42257	42257					0.07841449197189831
TAARQTLLLA	10	Unmodified	_TAARQTLLLA_					0	0	0		RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant;ENSG00000254656|ENST00000649591|RTL1	RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	353.2170104980469	3	353.216991	1056.62914	-0.85192	-0.00030091	0.95592	0.00033765	0.104	3.6735E-05	353.21729841905676	18.069	0.16752	18.069	17.989	18.156	0					8	5	2	0	0	0	0.66185	1	4653	4653		31.634	14.166	1	405160			41714	8010	27742	27856	42258	42258					0.10309407260024273
TAARSECKR	9	Unmodified	_TAARSECKR_					0	0	0		PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant;PRF1|p.L478*|1|0.29|ENSG00000180644|chr10:70598293-70598293|C/-|frameshift_variant;ENSG00000180644|ENST00000441259|PRF1	PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant	PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.765380859375	2	511.264007	1020.51346	1.2216	0.00062454	-1.6872	-0.00086259	-0.4656	-0.00023804	511.2634972035469	11.821	0.13462	11.821	11.734	11.868	0					12	4	3	0	0	0	0.61124	1	2500	2500		19.997	0.6368	1	467400			41715	6812	27743	27857	42259	42259					0.004025601374905818
TAASCIIGPL	10	Unmodified	_TAASCIIGPL_					0	0	0		tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1	tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1	tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2583923339844	2	473.257328	944.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.686	1	28.686	28.186	29.186	0								0	0	0	0.37816	1	9272	9272		37.159	0	1				41716	22922	27744	27858	42260	42260					0.025633093055375866
TAASLFKEM	9	Unmodified	_TAASLFKEM_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4700983-4701328:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2542724609375	2	499.254785	996.495018	0.86029	0.0004295	-1.0626	-0.00053051	-0.20232	-0.00010101	499.25426385602583	39.795	0.16035	39.795	39.732	39.893	0					11	5	3	0	0	0	0.04067	1	15659	15659		98.582	26.705	1	216050			41717	4494	27745	27859	42261	42261					-0.003369945570739219
TAASLFKEM	9	Unmodified	_TAASLFKEM_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4700983-4701328:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2545471191406	2	499.254785	996.495018	1.0589	0.00052864	-1.153	-0.00057564	-0.094138	-4.6999E-05	499.2543570060365	39.746	0.28252	39.746	39.643	39.926	0					12	6	3	0	0	0	0.017421	1	15740	15740		126.24	45.788	1	224270			41718	4494	27745	27859	42262	42262					-0.003369945570739219
TAASTTHR	8	Unmodified	_TAASTTHR_					0	0	0		nc|ENSG00000128567|O00592-2|PODXL;ENSG00000128567|ENST00000378555|PODXL	nc|ENSG00000128567|O00592-2|PODXL	nc|ENSG00000128567|O00592-2|PODXL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.7162780761719	2	422.717216	843.419879	-0.21334	-9.0182E-05	-0.46698	-0.0001974	-0.68031	-0.00028758	422.7170290182029	13.259	0.69822	13.259	13.159	13.857	0					32	15	4	0	0	0	0.68432	1	3412	3412		35.618	2.8059	1	6025100			41719	3547	27746	27860	42263	42263					-0.008094159732877415
TAATAVSLK	9	Unmodified	_TAATAVSLK_					0	0	0		ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	ENSG00000224389|ENST00000435363|C4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.25543212890625	2	431.255643	860.496732	-0.37665	-0.00016243	0.23297	0.00010047	-0.14369	-6.1966E-05	431.255752110965	18.984	0.149	18.984	18.884	19.033	0					6	3	2	0	0	0	0.1424	1	5053	5053		69.628	9.5094	1	265310			41720	7863	27747	27861	42264	42264					0.06090382523188964
TAATWGMVP	9	Unmodified	_TAATWGMVP_					0	0	0			REV__nc|ENSG00000006695|Q12887-2|COX10	REV__nc|ENSG00000006695|Q12887-2|COX10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2264709472656	2	467.228571	932.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.646	1	10.646	10.146	11.146	0								0	0	0	0.31623	1	2059	2059		31.955	0	1		+		41721	12859	27748	27862	42265	42265					-0.026335329000289676
TAAVDNGQAQL	11	Unmodified	_TAAVDNGQAQL_					0	0	0			REV__TTC7B|p.A815V|1|0.1|ENSG00000165914|chr14:90541456-90541456|G/A|missense_variant	REV__TTC7B|p.A815V|1|0.1|ENSG00000165914|chr14:90541456-90541456|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2716674804688	2	544.272552	1086.53055	0.32504	0.00017691	2.4383	0.0013271	2.7633	0.001504	544.2748399962423	24.748	0.71525	24.748	24.677	25.392	0					28	14	3	0	0	0	0.27467	1	8704	8704		65.465	7.2355	1	231710	+		41722	22244	27749	27863	42266	42266					-0.009252407757003311
TAAVKELLAG	10	Unmodified	_TAAVKELLAG_					0	0	0			REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant	REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7896423339844	2	486.78985	971.565146	-0.045628	-2.2211E-05	0.59756	0.00029088	0.55193	0.00026867	486.78989302062934	31.38	0.19797	31.38	31.299	31.497	0					13	8	2	0	0	0	0.28036	1	10078	10078		69.628	2.134	1	122550	+		41723	17487	27750	27864	42267	42267					0.07822627103041668
TAAVKELLAG	10	Unmodified	_TAAVKELLAG_					0	0	0			REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant	REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.78955078125	2	486.78985	971.565146	0.70706	0.00034419	-0.92498	-0.00045027	-0.21793	-0.00010609	486.78923949551927	31.66	0.33926	31.66	31.531	31.871	0					18	8	4	0	0	0	0.2538	1	11558	11558		72.879	9.3454	1	659020	+		41724	17487	27750	27864	42268	42268					0.07822627103041668
TAAVKELLAG	10	Unmodified	_TAAVKELLAG_					0	0	0			REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant	REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7892150878906	2	486.78985	971.565146	-0.23614	-0.00011495	-0.86678	-0.00042194	-1.1029	-0.00053689	486.789888922335	31.409	0.26226	31.409	31.342	31.604	0					9	6	2	0	0	0	0.14426	1	10817	10817		87.696	10.379	1	62825	+		41725	17487	27750	27864	42269	42269					0.07822627103041668
TAAVKMTLK	9	Unmodified	_TAAVKMTLK_					0	0	0		ENST00000604354.1_1_5:180743383-180748792:+|nuORF	ENST00000604354.1_1_5:180743383-180748792:+|nuORF	ENST00000604354.1_1_5:180743383-180748792:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7889099121094	2	481.788795	961.563038	-0.10494	-5.0561E-05	-0.10293	-4.959E-05	-0.20787	-0.00010015	481.78882212410355	24.318	0.16339	24.318	24.213	24.377	0					7	3	3	0	0	0	0.30951	1	8507	8507		49.442	5.3247	1	323990			41726	11064	27751	27865	42270	42270					0.08071875093594372
TACAQPSAII	10	Unmodified	_TACAQPSAII_					0	0	0		nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7519226074219	2	487.75241	973.490267	0.62766	0.00030614	-1.7185	-0.0008382	-1.0908	-0.00053205	487.7517367653331	42.73	0.17087	42.73	42.596	42.767	0					13	8	2	0	0	0	0.4758	1	16753	16753		47.96	0.30219	1	84539			41727	4174	27752	27866	42271	42271					0.0024612130016521405
TACDIQTHM	9	Unmodified	_TACDIQTHM_					0	0	0		nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7;MAP3K7|p.K209Nfs*14|1|0.31|ENSG00000135341|chr6:90553567-90553567|T/-|frameshift_variant;nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.218017578125	2	510.217877	1018.4212	0.96023	0.00048993	-0.83538	-0.00042623	0.12485	6.3702E-05	510.21736412405943	29.411	0.25992	29.411	29.324	29.584	0					13	6	3	0	0	0	0.3269	1	10513	10513		47.96	15.147	1	276790			41728	3985	27753	27867	42272	42272					-0.08727285991051303
TACQVATAF	9	Unmodified	_TACQVATAF_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.21759033203125	2	456.218203	910.421853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.128	1	40.128	39.628	40.628	0								0	0	0	0.1633	1	15296	15296		56.721	8.8055	1				41729	6147	27754	27868	42273	42273					-0.036941232797062185
TACQVATAF	9	Unmodified	_TACQVATAF_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.21820068359375	2	456.218203	910.421853	-0.42995	-0.00019615	-1.0078	-0.00045979	-1.4378	-0.00065594	456.21774932249525	40.072	0.1503	40.072	39.971	40.121	0					5	3	2	0	0	0	0.5741	1	15875	15875		24.519	0.31644	1	41056			41730	6147	27754	27868	42274	42274					-0.036941232797062185
TACVLRRS	8	Unmodified	_TACVLRRS_					0	0	0		ENSG00000145700|ENST00000506364|ANKRD31;nc|ENSG00000145700|Q8N7Z5|ANKRD31	ENSG00000145700|ENST00000506364|ANKRD31	ENSG00000145700|ENST00000506364|ANKRD31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2559509277344	2	453.252911	904.49127	3.9262	0.0017796	2.4645	0.001117	6.3907	0.0028966	453.25419637642426	19.328	0.1165	19.328	19.285	19.402	0					5	3	2	0	0	0	0.46905	1	5223	5223		63.306	7.8021	1	130300			41731	4683	27755	27869	42275	42275					0.035203804597244925
TADARALL	8	Unmodified	_TADARALL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.7395324707031	2	415.74016	829.465767	-0.35252	-0.00014656	-0.86898	-0.00036127	-1.2215	-0.00050783	415.73965040191325	31.284	0.21206	31.284	31.174	31.386	0					6	4	2	0	0	0	0.49887	1	11690	11690		60.294	1.512	1	215030			41732	1576	27756	27870	42276	42276					0.044212292089468974
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.27734375	2	530.277106	1058.53966	0.11606	6.1543E-05	0.41961	0.00022251	0.53567	0.00028405	530.2773391364036	41.488	0.33079	41.488	41.405	41.736	0					30	16	3	0	0	0	0.54267	1	15753	15753		27.882	0	1	591900			41733	6981	27757	27871	42277	42277					0.01273152580643
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.27685546875	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.267	1	41.267	40.767	41.767	0								0	0	0	0.3304	1	13722	13722		29.15	0	1				41734	6981	27757	27871	42278	42278					0.01273152580643
TADLPHHR	8	Unmodified	_TADLPHHR_					0	0	0			REV__ENSG00000174332|ENST00000628545|GLIS1	REV__ENSG00000174332|ENST00000628545|GLIS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7452697753906	2	473.746308	945.478063	-2.5523	-0.0012091	0.34462	0.00016326	-2.2077	-0.0010459	473.74649363848914	17.82	0.23186	17.82	17.723	17.955	0					14	5	3	0	0	0	0.44433	1	4510	4510		65.803	2.4969	1	1143300	+		41735	16561	27758	27872	42279	42279					0.003142656719887782
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2134704589844	2	494.213649	986.412745	-1.2692	-0.00062726	0.89149	0.00044059	-0.37773	-0.00018668	494.21422488707054	18.71	0.31211	18.71	18.559	18.871	0					25	10	3	0	0	0	0.27249	1	4909	4909		52.937	8.8199	1	330070			41736	7327	27759	27873	42280	42280					-0.08100516636011434
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2138671875	2	494.213649	986.412745	0.66334	0.00032783	-1.0382	-0.00051311	-0.37489	-0.00018527	494.2132490571808	18.925	0.2902	18.925	18.792	19.083	0					20	6	4	0	0	0	0.07136	1	5862	5862		87.696	36.361	1	1749500			41737	7327	27759	27873	42281	42281					-0.08100516636011434
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2134704589844	2	494.213649	986.412745	0.044165	2.1827E-05	0.0061335	3.0313E-06	0.050298	2.4858E-05	494.2136586758849	18.766	0.349	18.766	18.643	18.992	0					17	8	3	0	0	0	0.30841	1	4935	4935		49.536	15.364	1	191820			41738	7327	27759	27873	42282	42282					-0.08100516636011434
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2140197753906	2	494.213649	986.412745	0.89968	0.00044463	-1.436	-0.00070969	-0.53632	-0.00026505	494.2131737173552	18.936	0.49272	18.936	18.653	19.145	0					23	10	4	0	0	0	0.095583	1	5730	5730		80.455	31.013	1	1881300			41739	7327	27759	27873	42283	42283					-0.08100516636011434
TADRFTITQL	10	Unmodified	_TADRFTITQL_					0	0	0			REV__sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1	REV__sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.8178100585938	2	583.31422	1164.61389	3.2248	0.001881	0.29381	0.00017138	3.5186	0.0020524	583.815903953323	21.117	0.26307	21.117	21.008	21.271	0					12	5	3	0	0	0	0.31613	1	6831	6831		65.465	3.7741	1	4775900	+		41740	21577	27760	27874	42284	42284					0.03816495672140263
TAEDGSSRPGE	11	Unmodified	_TAEDGSSRPGE_					0	0	0			REV__ENSG00000187609|ENST00000340951|EXD3	REV__ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2410278320312	2	553.241449	1104.46835	0.042381	2.3447E-05	-2.3182	-0.0012825	-2.2758	-0.0012591	553.2403592428785	23.036	0.21769	23.036	22.978	23.195	0					5	4	2	0	0	0	0.65797	1	7921	7921		31.634	1.1306	1	172580	+		41741	17126	27761	27875	42285	42285					-0.07971011914719384
TAEFRELY	8	Unmodified	_TAEFRELY_					0	0	0		ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7551879882812	2	514.756007	1027.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.607	1	46.607	46.107	47.107	0								0	0	0	1.7419	1	18644	18644		38.806	5.2906	1				41742	7211	27762	27876	42286	42286					-0.01518822827756594
TAEGTVFHF	9	Unmodified	_TAEGTVFHF_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.74359130859375	2	504.742899	1007.47125	0.78498	0.00039621	0.17866	9.018E-05	0.96365	0.00048639	504.74304635070416	42.389	0.20562	42.389	42.322	42.528	0					17	11	2	0	0	0	0.16524	1	16063	16063		65.803	26.997	1	71895			41743	4427	27763	27877	42287	42287					-0.032190919992331146
TAEGTVFHF	9	Unmodified	_TAEGTVFHF_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.74310302734375	2	504.742899	1007.47125	1.0457	0.00052779	-1.2405	-0.00062614	-0.19486	-9.8355E-05	504.74218382504336	42.358	0.22345	42.358	42.284	42.507	0					22	11	3	0	0	0	0.2873	1	16626	16626		51.335	14.176	1	173710			41744	4427	27763	27877	42288	42288					-0.032190919992331146
TAEGTVFHF	9	Unmodified	_TAEGTVFHF_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.743408203125	2	504.742899	1007.47125	-0.35771	-0.00018055	0.86965	0.00043895	0.51194	0.0002584	504.74341249091265	42.315	0.20314	42.315	42.229	42.433	0					7	5	2	0	0	0	0.11118	1	16890	16890		76.847	15.875	1	89463			41745	4427	27763	27877	42289	42289					-0.032190919992331146
TAEGTVFHF	9	Unmodified	_TAEGTVFHF_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7430419921875	2	504.742899	1007.47125	1.2165	0.00061402	-1.4469	-0.00073029	-0.23036	-0.00011627	504.74223342926064	42.32	0.27279	42.32	42.214	42.486	0					14	7	3	0	0	0	0.14734	1	16882	16882		68.485	15.133	1	246060			41746	4427	27763	27877	42290	42290					-0.032190919992331146
TAEGYGFKQ	9	Unmodified	_TAEGYGFKQ_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU;TRNAU1AP-PTPRU|3|fusion	TRNAU1AP-PTPRU|3|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.74237060546875	2	500.740357	999.46616	2.922	0.0014631	-1.4811	-0.00074166	1.4408	0.00072149	501.24017080924864	19.667	0.82001	19.667	19.508	20.328	0					26	16	2	0	0	0	0.055856	1	6135	6135		93.195	22.379	1	1927600			41747	1319;23068	27764	27878	42291	42291					-0.0335939586184395
TAEHHAAVQHQ	11	Unmodified	_TAEHHAAVQHQ_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	614.7943115234375	2	614.794518	1227.57448	-0.77976	-0.00047939	0.40271	0.00024759	-0.37704	-0.0002318	614.7947055997831	17.812	0.25705	17.812	17.685	17.942	0					18	6	4	0	0	0	0.62108	1	5099	5099		35.152	0.97948	1	1440200	+		41748	15859	27765	27879	42292	42292					-0.030202115587371736
TAEISVPFRV	10	Unmodified	_TAEISVPFRV_					0	0	0		ENST00000479435.1_1_13:108922691-108939174:+|nuORF;ENST00000430559.5_1_13:108922691-108955654:+|nuORF	ENST00000479435.1_1_13:108922691-108939174:+|nuORF	ENST00000479435.1_1_13:108922691-108939174:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.5440368652344	3	373.544996	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.329	1	23.329	22.829	23.829	0								0	0	0	0.40797	1	6996	6996		28.081	2.0181	1				41749	9489	27766	27880	42293	42293					0.05905701023084475
TAEIYKGTV	9	Unmodified	_TAEIYKGTV_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.26727294921875	2	491.266207	980.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.837	1	37.837	37.337	38.337	0								0	0	0	0.3428	1	12778	12778		26.693	1.1189	1				41750	1705	27767	27881	42294	42294					0.026823478320579852
TAELESLEL	9	Unmodified	_TAELESLEL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.5101623535156	3	335.509729	1003.50736	0.65705	0.00022045	0.6015	0.00020181	1.2586	0.00042226	335.50995983265426	20.201	0.55787	20.201	20.11	20.668	0					29	12	4	0	0	0	0.13519	1	6237	6237		67.494	5.3863	1	10469000			41751	7845	27768	27882	42295	42295					0.005743203869542413
TAEQVNFLF	9	Unmodified	_TAEQVNFLF_					0	0	0			REV__ENST00000529077.5_1_11:134231258-134237194:+|nuORF	REV__ENST00000529077.5_1_11:134231258-134237194:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7723999023438	2	534.771657	1067.52876	1.1782	0.00063008	-0.11469	-6.1335E-05	1.0635	0.00056875	534.7716413211102	39.288	0.41428	39.288	39.113	39.527	0					33	14	3	0	0	0	0.26904	1	15406	15406		53.351	0	1	361700	+		41752	20027	27769	27883	42296	42296					-0.0023024979368528875
TAERGLIVY	9	Unmodified	_TAERGLIVY_					0	0	0		RAE1|p.P248Rfs*29|2|0.32|ENSG00000101146|chr20:57373570-57373570|C/-|frameshift_variant;RAE1|p.N351Ifs*12|2|0.32|ENSG00000101146|chr20:57378037-57378037|A/-|frameshift_variant;ENSG00000101146|ENST00000395841|RAE1	RAE1|p.P248Rfs*29|2|0.32|ENSG00000101146|chr20:57373570-57373570|C/-|frameshift_variant	RAE1|p.P248Rfs*29|2|0.32|ENSG00000101146|chr20:57373570-57373570|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.287841796875	2	511.287474	1020.5604	1.2229	0.00062524	-1.1493	-0.00058763	0.073562	3.7612E-05	511.28706782897217	36.357	0.62692	36.357	36.242	36.869	0					42	18	3	0	0	0	0.17854	1	14140	14140		64.207	12.872	1	1620900			41753	2093	27770	27884	42297	42297					0.050937429602981865
TAETMSVK	8	Oxidation (M)	_TAETM(Oxidation (M))SVK_		TAETM(1)SVK		TAETM(68)SVK	0	0	1		ENST00000521467.5_1_8:72740403-72875206:+|nuORF	ENST00000521467.5_1_8:72740403-72875206:+|nuORF	ENST00000521467.5_1_8:72740403-72875206:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.7167053222656	2	441.715493	881.416433	0.10044	4.4368E-05	2.3046	0.001018	2.4051	0.0010624	441.7165269774053	15.121	0.26744	15.121	14.96	15.227	0					8	5	2	0	0	0	0.41952	1	4082	4082		68.485	23.954	1	327460			41754	10312	27771	27885	42298	42298		411			-0.02901846862152979
TAETTGFHE	9	Unmodified	_TAETTGFHE_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.71856689453125	2	496.719621	991.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.7	1	17.7	17.2	18.2	0								0	0	0	0.3368	1	5303	5303		27.882	3.6795	1		+		41755	15688	27772	27886	42299	42299					-0.07136576621178392
TAEVTIEAQPS	11	Unmodified	_TAEVTIEAQPS_					0	0	0		PSG9|p.P43S|1|0.09|ENSG00000183668|chr19:43268087-43268087|G/A|missense_variant	PSG9|p.P43S|1|0.09|ENSG00000183668|chr19:43268087-43268087|G/A|missense_variant	PSG9|p.P43S|1|0.09|ENSG00000183668|chr19:43268087-43268087|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.286865234375	2	573.287868	1144.56118	-1.4682	-0.00084171	-0.41035	-0.00023525	-1.8786	-0.001077	573.2876849315242	16.803	0.19617	16.803	16.734	16.93	0					14	5	4	0	0	0	0.1937	1	4046	4046		75.043	12.936	1	1950100			41756	11981	27773	27887	42300	42300					-0.00531507181312918
TAFAIANGLL	10	Unmodified	_TAFAIANGLL_					0	0	0			REV__nc|ENSG00000160325|Q9UGQ2-2|CACFD1	REV__nc|ENSG00000160325|Q9UGQ2-2|CACFD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.78466796875	2	495.784567	989.554582	-0.76322	-0.00037839	0.18567	9.2053E-05	-0.57755	-0.00028634	495.7847515948418	34.56	0.24674	34.56	34.439	34.686	0					11	6	2	0	0	0	0.41384	1	13340	13340		34.173	3.6689	1	132820	+		41757	15749	27774	27888	42301	42301					0.059386444485994616
TAFCPLLKLS	10	Unmodified	_TAFCPLLKLS_					0	0	0		ENST00000263791.9_1_15:40300307-40301836:+|nuORF	ENST00000263791.9_1_15:40300307-40301836:+|nuORF	ENST00000263791.9_1_15:40300307-40301836:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.8741149902344	3	364.875577	1091.6049	-0.7027	-0.0002564	-3.4752	-0.001268	-4.1779	-0.0015244	364.87467140601757	24.992	0.73253	24.992	24.395	25.127	0					33	24	3	0	0	0	0.57211	1	7683	7683		37.508	0	1	250910			41758	8322	27775	27889	42302	42302					0.06276430782099851
TAFDVAEKY	9	Unmodified	_TAFDVAEKY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2565307617188	2	522.25584	1042.49713	1.5232	0.00079548	-0.67488	-0.00035246	0.84829	0.00044303	522.2555335125875	35.594	0.12195	35.594	35.539	35.661	0					12	6	2	0	0	0	0.36892	1	11657	11657		44.377	5.571	1	161780			41759	1482	27776	27890	42303	42303					-0.022422425476179342
TAFDVAEKY	9	Unmodified	_TAFDVAEKY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2564086914062	2	522.25584	1042.49713	1.6003	0.00083577	-1.6345	-0.00085365	-0.034235	-1.7879E-05	522.2553096585413	35.867	0.53524	35.867	35.495	36.03	0					20	14	2	0	0	0	0.076532	1	13461	13461		85.862	29.141	1	706200			41760	1482	27776	27890	42304	42304					-0.022422425476179342
TAFDVAEKY	9	Unmodified	_TAFDVAEKY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.25634765625	2	522.25584	1042.49713	0.40831	0.00021324	0.90149	0.00047081	1.3098	0.00068405	522.256121495121	35.642	0.48855	35.642	35.332	35.82	0					41	24	3	0	0	0	0.10506	1	12051	12051		78.264	28.822	1	531120			41761	1482	27776	27890	42305	42305					-0.022422425476179342
TAFDVAEKY	9	Unmodified	_TAFDVAEKY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.256103515625	2	522.25584	1042.49713	1.7841	0.00093173	-0.94056	-0.00049121	0.8435	0.00044052	522.2553891493352	35.821	0.65825	35.821	35.49	36.148	0					30	19	2	0	0	0	0.090954	1	13904	13904		81.525	26.749	1	2868600			41762	1482	27776	27890	42306	42306					-0.022422425476179342
TAFDVAEKY	9	Unmodified	_TAFDVAEKY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.25634765625	2	522.25584	1042.49713	1.0757	0.00056178	-0.12103	-6.321E-05	0.95465	0.00049857	522.2558248233781	35.637	0.26619	35.637	35.524	35.79	0					22	10	3	0	0	0	0.13726	1	12708	12708		70.816	3.3225	1	352610			41763	1482	27776	27890	42307	42307					-0.022422425476179342
TAFDVAEKY	9	Unmodified	_TAFDVAEKY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2560424804688	2	522.25584	1042.49713	1.6248	0.00084857	-1.1702	-0.00061114	0.45462	0.00023743	522.2555077130633	35.776	0.86579	35.776	35.415	36.281	0					31	17	3	0	0	0	0.037712	1	13828	13828		101.46	38.154	1	2610100			41764	1482	27776	27890	42308	42308					-0.022422425476179342
TAFDVAEKY	9	Unmodified	_TAFDVAEKY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2562866210938	2	522.25584	1042.49713	3.4001	0.0017757	-2.6607	-0.0013896	0.73943	0.00038617	522.2543211184508	35.76	0.66575	35.76	35.449	36.115	0					31	13	3	0	0	0	0.076532	1	13844	13844		85.862	32.51	1	3279900			41765	1482	27776	27890	42309	42309					-0.022422425476179342
TAFENAYLK	9	Unmodified	_TAFENAYLK_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant;ATM|p.K1170Nfs*11|1|0.26|ENSG00000149311|chr11:108281098-108281098|A/-|frameshift_variant	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.77197265625	2	528.771657	1055.52876	0.1096	5.7953E-05	0.33612	0.00017773	0.44572	0.00023568	528.7719326186989	34.688	0.24797	34.688	34.6	34.848	0					11	6	2	0	0	0	0.3269	1	12950	12950		47.96	13.787	1	494800			41766	251	27777	27891	42310	42310					0.00321750206330762
TAFENAYLK	9	Unmodified	_TAFENAYLK_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant;ATM|p.K1170Nfs*11|1|0.26|ENSG00000149311|chr11:108281098-108281098|A/-|frameshift_variant	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7722778320312	2	528.771657	1055.52876	1.7436	0.00092199	-0.37761	-0.00019967	1.366	0.00072232	528.7713233154522	34.717	0.22437	34.717	34.615	34.84	0					14	6	3	0	0	0	0.14578	1	13402	13402		68.846	4.6389	1	469180			41767	251	27777	27891	42311	42311					0.00321750206330762
TAFENAYLK	9	Unmodified	_TAFENAYLK_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant;ATM|p.K1170Nfs*11|1|0.26|ENSG00000149311|chr11:108281098-108281098|A/-|frameshift_variant	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7720947265625	2	528.771657	1055.52876	-1.1729	-0.00062018	2.0352	0.0010762	0.86237	0.00045599	528.7726706821503	34.468	0.1677	34.468	34.4	34.568	0					9	5	2	0	0	0	0.46194	1	12218	12218		36.447	2.2742	1	76826			41768	251	27777	27891	42312	42312					0.00321750206330762
TAFGHPQAY	9	Unmodified	_TAFGHPQAY_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2351989746094	2	496.235242	990.45593	-1.195	-0.00059299	1.0197	0.00050603	-0.17523	-8.6953E-05	496.23577805982853	27.33	0.20206	27.33	27.247	27.449	0					17	7	3	0	0	0	0.19605	1	8689	8689		62.107	29.295	1	327940			41769	3635	27778	27892	42313	42313					-0.03967958796442872
TAFGHPQAY	9	Unmodified	_TAFGHPQAY_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2350158691406	2	496.235242	990.45593	0.74271	0.00036856	-1.1226	-0.00055709	-0.37992	-0.00018853	496.23474421927796	27.56	0.41006	27.56	27.405	27.815	0					19	8	5	0	0	0	0.037569	1	10009	10009		101.6	62.795	1	1634500			41770	3635	27778	27892	42314	42314					-0.03967958796442872
TAFGHPQAY	9	Unmodified	_TAFGHPQAY_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.23504638671875	2	496.235242	990.45593	0.12968	6.4352E-05	0.20247	0.00010047	0.33215	0.00016482	496.2353530700425	27.4	0.29374	27.4	27.294	27.588	0					12	7	3	0	0	0	0.13267	1	8958	8958		71.877	23.962	1	182580			41771	3635	27778	27892	42315	42315					-0.03967958796442872
TAFGHPQAY	9	Unmodified	_TAFGHPQAY_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.23486328125	2	496.235242	990.45593	-2.3768	-0.0011794	1.717	0.00085204	-0.65975	-0.00032739	496.236065268163	27.409	0.17525	27.409	27.279	27.454	0					7	4	2	0	0	0	0.42902	1	8954	8954		39.253	10.103	1	153960			41772	3635	27778	27892	42316	42316					-0.03967958796442872
TAFGHPQAY	9	Unmodified	_TAFGHPQAY_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2350158691406	2	496.235242	990.45593	0.96384	0.00047829	-1.3393	-0.00066461	-0.37546	-0.00018631	496.2347201596339	27.55	0.42279	27.55	27.39	27.813	0					17	8	4	0	0	0	0.087861	1	9861	9861		82.241	42.988	1	1466800			41773	3635	27778	27892	42317	42317					-0.03967958796442872
TAFQGMLRK	9	Unmodified	_TAFQGMLRK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.19549560546875	3	351.195421	1050.56443	1.4594	0.00051253	-1.1501	-0.00040392	0.30928	0.00010862	351.19517673921536	27.551	0.42279	27.551	27.39	27.813	0					10	8	2	0	0	0	0.4966	1	9886	9886		32.812	6.749	1	838870			41774	4549	27779	27893	42318	42318					0.04117509182356116
TAFSSGFLK	9	Unmodified	_TAFSSGFLK_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2558898925781	2	479.255643	956.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.847	1	37.847	37.347	38.347	0								0	0	0	0.12601	1	14825	14825		65.465	7.6541	1				41775	4275	27780	27894	42319	42319					0.01674382523208351
TAFSVARQ	8	Unmodified	_TAFSVARQ_					0	0	0			REV__ENST00000397981.7_1_19:7977316-7977859:+|nuORF	REV__ENST00000397981.7_1_19:7977316-7977859:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.2375793457031	2	440.237784	878.461016	-0.57175	-0.00025171	0.1772	7.8011E-05	-0.39455	-0.00017369	440.2379113695236	17.825	0.13848	17.825	17.737	17.876	0					5	3	2	0	0	0	0.68432	1	4537	4537		35.618	2.8059	1	165410	+		41776	18919	27781	27895	42320	42320					0.01692345066192047
TAGAVTQCY	9	Carbamidomethyl (C)	_TAGAVTQC(Carbamidomethyl (C))Y_	TAGAVTQC(1)Y		TAGAVTQC(78)Y		0	1	0		ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7181091308594	2	485.718567	969.422581	0.66894	0.00032492	-1.4595	-0.00070891	-0.79058	-0.000384	485.71784837595675	27.942	0.25922	27.942	27.833	28.092	0					10	6	2	0	0	0	0.10506	1	9828	9828		78.264	30.348	1	257250			41777	2377	27782	27896	42321	42321	96				-0.06335328630643744
TAGAVTQCY	9	Carbamidomethyl (C)	_TAGAVTQC(Carbamidomethyl (C))Y_	TAGAVTQC(1)Y		TAGAVTQC(74)Y		0	1	0		ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.71856689453125	2	485.718567	969.422581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.698	1	27.698	27.198	28.198	0								0	0	0	0.091069	1	8856	8856		74.255	10.949	1				41778	2377	27782	27896	42322	42322	96				-0.06335328630643744
TAGAVTQCY	9	Carbamidomethyl (C)	_TAGAVTQC(Carbamidomethyl (C))Y_	TAGAVTQC(1)Y		TAGAVTQC(50)Y		0	1	0		ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7184753417969	2	485.718567	969.422581	-0.24626	-0.00011961	-0.52309	-0.00025408	-0.76935	-0.00037369	485.71836333193136	27.765	0.17422	27.765	27.701	27.875	0					9	4	3	0	0	0	0.30841	1	9132	9132		49.536	11.725	1	95089			41779	2377	27782	27896	42323	42323	96				-0.06335328630643744
TAGAVTQCY	9	Carbamidomethyl (C)	_TAGAVTQC(Carbamidomethyl (C))Y_	TAGAVTQC(1)Y		TAGAVTQC(53)Y		0	1	0		ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7185974121094	2	485.718567	969.422581	-0.56333	-0.00027362	-0.032565	-1.5817E-05	-0.59589	-0.00028944	485.7186525190488	27.918	0.2127	27.918	27.813	28.026	0					7	4	2	0	0	0	0.27249	1	10065	10065		52.937	8.4056	1	157820			41780	2377	27782	27896	42324	42324	96				-0.06335328630643744
TAGAVTQCY	9	Carbamidomethyl (C)	_TAGAVTQC(Carbamidomethyl (C))Y_	TAGAVTQC(1)Y		TAGAVTQC(69)Y		0	1	0		ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.71832275390625	2	485.718567	969.422581	0.83887	0.00040745	-1.5052	-0.00073109	-0.6663	-0.00032363	485.7178551154136	27.902	0.31204	27.902	27.797	28.109	0					10	6	2	0	0	0	0.14578	1	10058	10058		68.846	14.07	1	498400			41781	2377	27782	27896	42325	42325	96				-0.06335328630643744
TAGDGLIELRK	11	Unmodified	_TAGDGLIELRK_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.8350830078125	2	586.83532	1171.65609	3.6274	0.0021287	-3.3434	-0.001962	0.28392	0.00016661	586.8336214708966	30.36	0.11652	30.36	30.287	30.404	0					8	3	3	0	0	0	0.11999	1	9958	9958		84.817	19.54	1	143730			41782	5966	27783	27897	42326	42326					0.07712471080503747
TAGDGLIELRK	11	Unmodified	_TAGDGLIELRK_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.834716796875	2	586.83532	1171.65609	1.2454	0.00073082	-1.499	-0.00087966	-0.25362	-0.00014883	586.834350938348	30.572	0.24412	30.572	30.464	30.708	0					9	5	2	0	0	0	0.0010046	1	11430	11430		133.75	37.087	1	348330			41783	5966	27783	27897	42327	42327					0.07712471080503747
TAGDGLIELRK	11	Unmodified	_TAGDGLIELRK_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.8355712890625	2	586.83532	1171.65609	0.1059	6.2147E-05	0.30738	0.00018038	0.41328	0.00024253	586.8355476936758	30.537	0.25311	30.537	30.393	30.646	0					8	5	2	0	0	0	5.4966E-05	1	11329	11329		159.34	52.653	1	418980			41784	5966	27783	27897	42328	42328					0.07712471080503747
TAGGIVFV	8	Unmodified	_TAGGIVFV_					0	0	0			REV__ENST00000491789.1_1_1:150071171-150116971:+|nuORF	REV__ENST00000491789.1_1_1:150071171-150116971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.2200012207031	2	382.221072	762.42759	-2.1552	-0.00082378	-0.44344	-0.00016949	-2.5987	-0.00099327	382.2207765404444	46.272	0.20278	46.272	46.191	46.394	0					16	12	2	0	0	0	0.79176	1	15645	15645		21.702	6.0661	1	60246	+		41785	14870	27784	27898	42329	42329					0.03687343294279799
TAGGKGTPL	9	Unmodified	_TAGGKGTPL_					0	0	0		ENST00000493467.5_1_9:135785858-135804259:-|nuORF;TSC1|p.L463*|1|0.4|ENSG00000165699|chr9:132906781-132906781|A/-|frameshift_variant;TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant;nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1	ENST00000493467.5_1_9:135785858-135804259:-|nuORF	ENST00000493467.5_1_9:135785858-135804259:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.22686767578125	2	401.226885	800.439217	-0.60461	-0.00024258	0.39285	0.00015762	-0.21176	-8.4962E-05	401.22707556147566	17.589	0.21904	17.589	17.43	17.649	0					7	4	2	0	0	0	0.17854	1	5115	5115		64.207	7.4862	1	209590			41786	5823	27785	27899	42330	42330					0.03101540317618401
TAGGSRQQPP	10	Unmodified	_TAGGSRQQPP_					0	0	0			REV__ENST00000367108.7_1_1:206809048-206811012:+|nuORF	REV__ENST00000367108.7_1_1:206809048-206811012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7523193359375	2	499.75433	997.494107	-0.0024658	-1.2323E-06	-3.172	-0.0015852	-3.1744	-0.0015864	499.75331675090774	30.609	0.19472	30.609	30.563	30.758	0					8	4	3	0	0	0	0.44601	1	11470	11470		51.193	4.7359	1	482350	+		41787	18591	27786	27900	42331	42331					-0.004740728817637319
TAGGWAKGQ	9	Unmodified	_TAGGWAKGQ_					0	0	0		ENST00000407973.2_2_22:24951006-24951796:-|nuORF;nc|ENSG00000138867|Q96NT3-3|GUCD1	ENST00000407973.2_2_22:24951006-24951796:-|nuORF	ENST00000407973.2_2_22:24951006-24951796:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2233581542969	2	438.222134	874.429715	3.1719	0.00139	-0.42687	-0.00018706	2.745	0.0012029	438.2220862013267	18.072	0.33918	18.072	17.881	18.22	0					23	10	3	0	0	0	0.18605	1	4638	4638		63.306	3.0123	1	291110			41788	9289	27787	27901	42332	42332					-0.012522279679046733
TAGKFESTQ	9	Unmodified	_TAGKFESTQ_					0	0	0			REV__TPTE|p.A61Hfs*53|1|0.04|ENSG00000274391|chr21:10552663-10552663|A/-|frameshift_variant	REV__TPTE|p.A61Hfs*53|1|0.04|ENSG00000274391|chr21:10552663-10552663|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.73919677734375	2	484.737814	967.461075	0.8544	0.00041416	1.9905	0.00096487	2.8449	0.001379	484.7388428857525	17.674	0.37047	17.674	17.464	17.834	0					15	7	4	0	0	0	0.063823	1	5131	5131		90.37	2.6155	1	1923500	+		41789	17821	27788	27902	42333	42333					-0.023956997244795275
TAGKTTILY	9	Unmodified	_TAGKTTILY_					0	0	0		nc|ENSG00000228696|Q8IVW1-2|ARL17A;ENSG00000228696|ENST00000450673|ARL17B;ENSG00000185829|ENST00000336125|ARL17A;nc|ENSG00000228696|Q8IVW1-4|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2763671875	2	484.276575	966.538597	0.62754	0.0003039	-1.5903	-0.00077015	-0.96277	-0.00046625	484.27605205084757	30.528	0.30878	30.528	30.405	30.714	0					17	7	3	0	0	0	0.44593	1	11028	11028		37.812	4.2959	1	334800			41790	7108	27789	27903	42334	42334					0.053989382117038076
TAGNKAALL	9	Unmodified	_TAGNKAALL_					0	0	0		WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant;ENSG00000106299|ENST00000223023|WASL	WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant	WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.7554626464844	2	429.75581	857.497067	-0.56588	-0.00024319	0.055202	2.3723E-05	-0.51067	-0.00021946	429.75582494371963	35.862	0.31606	35.862	35.779	36.095	0					17	8	3	0	0	0	0.39215	1	13484	13484		42.396	3.59	1	334690			41791	2430	27790	27904	42335	42335					0.06261802243022885
TAGPALRPI	9	Unmodified	_TAGPALRPI_					0	0	0			REV__ENST00000257897.7_2_12:58119581-58120334:-|nuORF	REV__ENST00000257897.7_2_12:58119581-58120334:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	448.2714538574219	2	448.271627	894.528701	0.63499	0.00028465	-0.85382	-0.00038274	-0.21883	-9.8096E-05	448.27126073147366	31.243	0.55067	31.243	30.935	31.485	0					28	12	3	0	0	0	0.41113	1	11784	11784		40.778	0	1	282700	+		41792	17989	27791	27905	42336	42336					0.07721794996984954
TAGPAVHL	8	Unmodified	_TAGPAVHL_					0	0	0		nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	383.21624755859375	2	383.216321	764.418088	-0.0012004	-4.6003E-07	-0.10113	-3.8755E-05	-0.10233	-3.9215E-05	383.2161719719529	28.91	0.24492	28.91	28.78	29.024	0					10	8	2	0	0	0	0.79176	1	9067	9067		21.702	2.3424	1	107970			41793	6542	27792	27906	42337	42337					0.0264557500876208
TAGRVLEL	8	Unmodified	_TAGRVLEL_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2;CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.75592041015625	2	429.75581	857.497067	0.95928	0.00041226	-1.0166	-0.00043691	-0.057356	-2.4649E-05	429.7554062099288	34.098	0.42669	34.098	33.799	34.225	0					18	10	3	0	0	0	0.59714	1	13102	13102		49.536	0.094497	1	1141200			41794	5844	27793	27907	42338	42338					0.06261802243022885
TAGSPNLAAG	10	Unmodified	_TAGSPNLAAG_					0	0	0		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.71923828125	2	429.719424	857.424296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.977	1	14.977	14.477	15.477	0								0	0	0	0.17308	1	3848	3848		67.494	4.1874	1				41795	4240	27794	27908	42339	42339					-0.010119515503788534
TAGTHPVGLQ	10	Unmodified	_TAGTHPVGLQ_					0	0	0		ENST00000484375.5_1_7:98972330-98988614:+|nuORF	ENST00000484375.5_1_7:98972330-98988614:+|nuORF	ENST00000484375.5_1_7:98972330-98988614:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.76080322265625	2	490.761623	979.508694	-0.054413	-2.6704E-05	-0.75143	-0.00036878	-0.80585	-0.00039548	490.76110870265205	16.408	0.21282	16.408	16.263	16.476	0					14	8	2	0	0	0	0.56931	1	3706	3706		37.812	4.9991	1	157370			41796	9992	27795	27909	42340	42340					0.018119992663855555
TAHCFIPL	8	Unmodified	_TAHCFIPL_					0	0	0		nc|ENSG00000125726|P32970-2|CD70	nc|ENSG00000125726|P32970-2|CD70	nc|ENSG00000125726|P32970-2|CD70	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2341613769531	2	451.233656	900.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.982	1	31.982	31.482	32.482	0								0	0	0	1.7419	1	10313	10313		52.299	1.1065	1				41797	11509	27796	27910	42341	42341					-0.0014492517479993694
TAHDLLPIK	9	Unmodified	_TAHDLLPIK_					0	0	0		ENST00000454544.2_1_1:147907560-147907839:+|nuORF	ENST00000454544.2_1_1:147907560-147907839:+|nuORF	ENST00000454544.2_1_1:147907560-147907839:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53662109375	3	336.53432	1006.58113	1.4876	0.00050062	-1.3915	-0.00046828	0.096077	3.2333E-05	336.5337967162917	25.098	6.4193	25.098	24.447	30.866	0					183	131	2	0	0	0	0.51817	1	8881	8881		37.812	18.708	1	646530			41798	9676	27797	27911	42342	42342					0.07810333339944009
TAHDQKTAL	9	Unmodified	_TAHDQKTAL_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7589111328125	2	492.759081	983.503609	-0.16443	-8.1025E-05	-0.30728	-0.00015141	-0.47171	-0.00023244	492.75894698049905	15.643	0.12177	15.643	15.575	15.697	0					10	5	2	0	0	0	0.11898	1	3431	3431		75.043	36.237	1	121140			41799	4516	27798	27912	42343	42343					0.011196954037473006
TAHDQKTAL	9	Unmodified	_TAHDQKTAL_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7591247558594	2	492.759081	983.503609	-0.054813	-2.7009E-05	0.10587	5.2171E-05	0.051062	2.5161E-05	492.7591212058835	15.937	0.21305	15.937	15.834	16.047	0					10	4	3	0	0	0	0.01873	1	4443	4443		124.08	44.629	1	1837500			41800	4516	27798	27912	42344	42344					0.011196954037473006
TAHDQKTAL	9	Unmodified	_TAHDQKTAL_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.75921630859375	2	492.759081	983.503609	0.37482	0.00018469	-0.022867	-1.1268E-05	0.35195	0.00017343	492.75901430467144	15.705	0.10938	15.705	15.657	15.766	0					9	4	3	0	0	0	0.020674	1	3571	3571		120.87	46.613	1	244230			41801	4516	27798	27912	42345	42345					0.011196954037473006
TAHDQKTAL	9	Unmodified	_TAHDQKTAL_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7591857910156	2	492.759081	983.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.714	1	15.714	15.214	16.214	0								0	0	0	0.14881	1	3581	3581		60.118	25.946	1				41802	4516	27798	27912	42346	42346					0.011196954037473006
TAHDQKTAL	9	Unmodified	_TAHDQKTAL_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7587890625	2	492.759081	983.503609	-0.59915	-0.00029523	0.2126	0.00010476	-0.38654	-0.00019047	492.7591737466229	15.905	0.16502	15.905	15.849	16.014	0					7	3	3	0	0	0	0.0080613	1	4306	4306		145.16	37.068	1	2678800			41803	4516	27798	27912	42347	42347					0.011196954037473006
TAHHLGLLK	9	Unmodified	_TAHHLGLLK_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.5345458984375	3	330.534543	988.581799	0.52498	0.00017352	-0.77949	-0.00025765	-0.25452	-8.4126E-05	330.5342673356736	21.863	0.35305	21.863	21.766	22.119	0					18	8	4	0	0	0	0.37197	1	7020	7020		69.628	69.628	1	589170			41804	7099	27799	27913	42348	42348					0.08705172779650638
TAHHLGLLK	9	Unmodified	_TAHHLGLLK_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	330.53436279296875	3	330.534543	988.581799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.69	1	21.69	21.19	22.19	0								0	0	0	0.35899	1	6332	6332		45.972	27.648	1				41805	7099	27799	27913	42349	42349					0.08705172779650638
TAHHLGLLK	9	Unmodified	_TAHHLGLLK_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.5343933105469	3	330.534543	988.581799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.792	1	21.792	21.292	22.292	0								0	0	0	0.14517	1	7148	7148		87.696	34.76	1				41806	7099	27799	27913	42350	42350					0.08705172779650638
TAHIHATEY	9	Unmodified	_TAHIHATEY_					0	0	0		nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7515258789062	2	521.751256	1041.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.416	1	20.416	19.916	20.916	0								0	0	0	0.24724	1	6613	6613		44.117	13.613	1				41807	3253	27800	27914	42351	42351					-0.03112591113290364
TAHIHATEY	9	Unmodified	_TAHIHATEY_					0	0	0		nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7517700195312	2	521.751256	1041.48796	0.40006	0.00020873	0.52976	0.0002764	0.92982	0.00048514	521.7515110808176	20.402	0.1663	20.402	20.294	20.46	0					5	3	2	0	0	0	0.22377	1	6488	6488		58.782	10.866	1	191430			41808	3253	27800	27914	42352	42352					-0.03112591113290364
TAHNLLVLQ	9	Unmodified	_TAHNLLVLQ_					0	0	0			REV__ENST00000420886.6_1_12:123812326-123812447:-|nuORF	REV__ENST00000420886.6_1_12:123812326-123812447:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7906188964844	2	504.795466	1007.57638	-0.06678	-3.371E-05	-2.3308	-0.0011766	-2.3976	-0.0012103	504.7943460838352	27.923	0.3445	27.923	27.774	28.119	0					25	12	3	0	0	0	0.44593	1	8635	8635		37.812	3.639	1	251930	+		41809	19075	27801	27915	42353	42353					0.0728944919718515
TAHSRNNPD	9	Unmodified	_TAHSRNNPD_					0	0	0		ENST00000458048.1_1_1:77660646-77660778:+|nuORF	ENST00000458048.1_1_1:77660646-77660778:+|nuORF	ENST00000458048.1_1_1:77660646-77660778:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.23419189453125	2	506.233761	1010.45297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.141	1	33.141	32.641	33.641	0								0	0	0	0.3245	1	12662	12662		30.318	3.6248	1				41810	9707	27802	27916	42354	42354					-0.05183833921239511
TAIEAQHLL	9	Unmodified	_TAIEAQHLL_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.279541015625	2	498.279649	994.544745	0.81935	0.00040827	-0.92675	-0.00046178	-0.1074	-5.3515E-05	498.27902296285856	36.489	0.32894	36.489	36.385	36.714	0					16	9	2	0	0	0	0.095583	1	14213	14213		80.455	21.673	1	221920			41811	2307	27803	27917	42355	42355					0.04725456443236453
TAIEAQHLL	9	Unmodified	_TAIEAQHLL_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2793273925781	2	498.279649	994.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.442	1	36.442	35.942	36.942	0								0	0	0	0.080575	1	14163	14163		77.318	27.876	1				41812	2307	27803	27917	42356	42356					0.04725456443236453
TAIEKSLKEL	10	Unmodified	_TAIEKSLKEL_					0	0	0			REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3355102539062	2	566.334621	1130.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.549	1	27.549	27.049	28.049	0								0	0	0	0.4201	1	8505	8505		17.468	12.562	1		+		41813	15520	27804	27918	42357	42357					0.0945883699175738
TAIEKVVQM	9	Unmodified	_TAIEKVVQM_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.78436279296875	2	509.78371	1017.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.892	1	34.892	34.392	35.392	0								0	0	0	0.14881	1	11427	11427		60.118	14.166	1				41814	4505	27805	27919	42358	42358					0.04479267368355977
TAIEKVVQM	9	Unmodified	_TAIEKVVQM_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7835998535156	2	509.78371	1017.55287	0.94849	0.00048353	-0.98886	-0.0005041	-0.040368	-2.0579E-05	509.78320322639456	35.156	0.35474	35.156	35.074	35.429	0					16	9	3	0	0	0	0.070005	1	13170	13170		88.177	40.217	1	293940			41815	4505	27805	27919	42359	42359					0.04479267368355977
TAIEKVVQM	9	Unmodified	_TAIEKVVQM_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7845458984375	2	509.78371	1017.55287	0.25109	0.000128	0.32793	0.00016717	0.57902	0.00029517	509.7842365353657	34.969	0.14539	34.969	34.89	35.035	0					9	4	3	0	0	0	0.28897	1	12409	12409		51.193	7.0759	1	96372			41816	4505	27805	27919	42360	42360					0.04479267368355977
TAIEKVVQM	9	Unmodified	_TAIEKVVQM_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7840270996094	2	509.78371	1017.55287	-0.025916	-1.3212E-05	0.64611	0.00032937	0.62019	0.00031616	509.7841081279386	35.089	0.21342	35.089	35.032	35.245	0					10	4	3	0	0	0	0.12834	1	13524	13524		72.879	14.097	1	404920			41817	4505	27805	27919	42361	42361					0.04479267368355977
TAIEKVVQM	9	Unmodified	_TAIEKVVQM_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7838439941406	2	509.78371	1017.55287	1.3566	0.00069156	-1.3526	-0.00068951	0.0040193	2.049E-06	509.78299193429774	35.121	0.36597	35.121	35.015	35.381	0					13	7	3	0	0	0	0.10506	1	13540	13540		78.264	23.499	1	808000			41818	4505	27805	27919	42362	42362					0.04479267368355977
TAIGMPVEK	9	Unmodified	_TAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2571105957031	2	473.257328	944.500103	-0.022727	-1.0756E-05	-0.74863	-0.00035429	-0.77136	-0.00036505	473.2570220870944	28.632	0.20531	28.632	28.559	28.764	0					16	9	2	0	0	0	0.21263	1	8953	8953		60.118	4.6141	1	204630			41819	2587	27806	27920	42363	42363					0.025633093055489553
TAIGMPVEK	9	Unmodified	_TAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.25701904296875	2	473.257328	944.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.916	1	28.916	28.416	29.416	0								0	0	0	0.13425	1	10271	10271		63.534	0.22758	1				41820	2587	27806	27920	42364	42364					0.025633093055489553
TAIGMPVEK	9	Unmodified	_TAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2571105957031	2	473.257328	944.500103	-0.12205	-5.7762E-05	-0.44553	-0.00021085	-0.56758	-0.00026861	473.25712148049735	28.917	0.40095	28.917	28.778	29.179	0					15	8	3	0	0	0	0.37744	1	10644	10644		43.651	1.2547	1	661350			41821	2587	27806	27920	42365	42365					0.025633093055489553
TAIGMPVEK	9	Unmodified	_TAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2571716308594	2	473.257328	944.500103	-0.50352	-0.00023829	-0.40514	-0.00019174	-0.90866	-0.00043003	473.25726791568303	28.714	0.16751	28.714	28.639	28.806	0					9	4	3	0	0	0	0.21263	1	9558	9558		60.118	6.7668	1	144550			41822	2587	27806	27920	42366	42366					0.025633093055489553
TAIGMPVEK	9	Unmodified	_TAIGMPVEK_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF;MFSD10|p.S111Gfs*48|1|0.44|ENSG00000109736|chr4:2933125-2933147|GGGCGCCTCCCCAAGCAGTCAGA/-|frameshift_variant	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2571105957031	2	473.257328	944.500103	-0.58165	-0.00027527	-0.011718	-5.5457E-06	-0.59337	-0.00028082	473.2574338816926	28.867	0.26746	28.867	28.758	29.026	0					13	5	4	0	0	0	0.19952	1	10494	10494		61.691	10.356	1	1168400			41823	2587	27806	27920	42367	42367					0.025633093055489553
TAILPMLALA	10	Unmodified	_TAILPMLALA_					0	0	0			REV__ENST00000461942.5_1_9:116079031-116083765:-|nuORF	REV__ENST00000461942.5_1_9:116079031-116083765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	338.54168701171875	3	338.540306	1012.59909	3.0182	0.0010218	0.82666	0.00027986	3.8448	0.0013016	338.5405918675223	20.769	0.61463	20.769	20.511	21.126	0					39	12	6	0	0	0	0.52275	1	6616	6616		42.864	16.171	1	4734200	+		41824	15376	27807	27921	42368	42368					0.09329332270419854
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.76336669921875	2	458.764166	915.513779	0.065774	3.0175E-05	-0.42334	-0.00019421	-0.35757	-0.00016404	458.7639004847271	26.511	0.21288	26.511	26.421	26.634	0					15	7	3	0	0	0	0.12834	1	8052	8052		72.879	8.672	1	331890			41825	6486	27808	27922	42369	42369					0.052643031289903774
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.76373291015625	2	458.764166	915.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.808	1	26.808	26.308	27.308	0								0	0	0	0.31222	1	9293	9293		32.751	3.601	1				41826	6486	27808	27922	42370	42370					0.052643031289903774
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7637634277344	2	458.764166	915.513779	0.7944	0.00036444	-1.3282	-0.00060933	-0.5338	-0.00024489	458.7634682404399	26.767	0.31073	26.767	26.671	26.982	0					14	7	2	0	0	0	0.090954	1	9263	9263		81.525	26.749	1	2298200			41827	6486	27808	27922	42371	42371					0.052643031289903774
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7637023925781	2	458.764166	915.513779	-0.15771	-7.235E-05	-0.29887	-0.00013711	-0.45658	-0.00020946	458.7639248033223	26.786	0.36211	26.786	26.677	27.039	0					17	7	3	0	0	0	0.015992	1	9615	9615		128.6	40.848	1	1665800			41828	6486	27808	27922	42372	42372					0.052643031289903774
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.76422119140625	2	458.764166	915.513779	-0.043883	-2.0132E-05	0.31548	0.00014473	0.2716	0.0001246	458.76429021836026	26.574	0.19145	26.574	26.478	26.67	0					7	4	2	0	0	0	0.13109	1	8566	8566		72.243	8.036	1	191370			41829	6486	27808	27922	42373	42373					0.052643031289903774
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.76373291015625	2	458.764166	915.513779	0.085757	3.9342E-05	-0.91211	-0.00041844	-0.82635	-0.0003791	458.76363067382806	26.557	0.19476	26.557	26.509	26.704	0					8	4	2	0	0	0	0.36135	1	8578	8578		45.022	18.329	1	175760			41830	6486	27808	27922	42374	42374					0.052643031289903774
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7642517089844	2	458.764166	915.513779	-0.44249	-0.000203	0.48382	0.00022196	0.041335	1.8963E-05	458.76424447723525	26.713	0.31574	26.713	26.603	26.919	0					19	6	4	0	0	0	0.019258	1	9460	9460		123.21	40.968	1	2043400			41831	6486	27808	27922	42375	42375					0.052643031289903774
TAINASRAL	9	Unmodified	_TAINASRAL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7637939453125	2	458.764166	915.513779	0.88019	0.0004038	-1.4916	-0.00068429	-0.61142	-0.0002805	458.7633914436112	26.696	0.41488	26.696	26.587	27.002	0					14	8	3	0	0	0	0.073657	1	9475	9475		86.882	30.161	1	788560			41832	6486	27808	27922	42376	42376					0.052643031289903774
TAINTENIRLV	11	Unmodified	_TAINTENIRLV_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.23834228515625	3	415.238343	1242.6932	-0.36257	-0.00015055	-0.17801	-7.3915E-05	-0.54058	-0.00022447	415.2383420497752	30.537	1.5909	30.537	30.393	31.984	0					87	32	6	0	0	0	0.75314	1	11474	11474		22.562	0	1	49759000			41833	3158	27809	27923	42377	42377					0.08156142626262408
TAIRALETY	9	Unmodified	_TAIRALETY_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant;ELL2|p.H478Afs*4|1|0.2|ENSG00000118985|chr5:95898334-95898335|-/T|frameshift_variant;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.28564453125	2	519.284931	1036.55531	1.4272	0.00074114	0.8611	0.00044716	2.2883	0.0011883	519.2853933386623	34.756	0.15734	34.756	34.706	34.864	0					10	7	2	0	0	0	0.27123	1	11387	11387		45.972	18.09	1	67929			41834	905	27810	27924	42378	42378					0.03849439097666618
TAIRALETY	9	Unmodified	_TAIRALETY_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant;ELL2|p.H478Afs*4|1|0.2|ENSG00000118985|chr5:95898334-95898335|-/T|frameshift_variant;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.285400390625	2	519.284931	1036.55531	1.386	0.00071971	0.48953	0.00025421	1.8755	0.00097392	519.2851594215113	35.058	0.32479	35.058	34.915	35.24	0					19	8	3	0	0	0	0.073657	2	13114	13099;13114		90.601	37.249	1	511160			41835	905	27810	27924	42379;42380	42380					0.03849439097666618
TAIRALETY	9	Unmodified	_TAIRALETY_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant;ELL2|p.H478Afs*4|1|0.2|ENSG00000118985|chr5:95898334-95898335|-/T|frameshift_variant;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2857666015625	2	519.284931	1036.55531	0.18307	9.5065E-05	1.1545	0.0005995	1.3375	0.00069456	519.2854626207805	34.86	0.21076	34.86	34.806	35.017	0					16	9	3	0	0	0	0.18505	1	11773	11773		65.465	22.991	1	186100			41836	905	27810	27924	42381	42381					0.03849439097666618
TAIRALETY	9	Unmodified	_TAIRALETY_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant;ELL2|p.H478Afs*4|1|0.2|ENSG00000118985|chr5:95898334-95898335|-/T|frameshift_variant;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.28564453125	2	519.284931	1036.55531	1.6309	0.00084691	-0.20195	-0.00010487	1.429	0.00074204	519.2848823485541	35.069	0.43464	35.069	34.924	35.359	0					28	12	5	0	0	0	0.13907	1	13554	13554		63.534	32.004	1	1035700			41837	905	27810	27924	42382	42382					0.03849439097666618
TAIRALETY	9	Unmodified	_TAIRALETY_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant;ELL2|p.H478Afs*4|1|0.2|ENSG00000118985|chr5:95898334-95898335|-/T|frameshift_variant;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.286376953125	2	519.284931	1036.55531	0.97665	0.00050716	0.40412	0.00020985	1.3808	0.00071701	519.285107672191	34.851	0.24574	34.851	34.717	34.963	0					15	9	2	0	0	0	0.19891	1	12353	12353		54.722	35.619	1	117830			41838	905	27810	27924	42383	42383					0.03849439097666618
TAIRALETY	9	Unmodified	_TAIRALETY_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant;ELL2|p.H478Afs*4|1|0.2|ENSG00000118985|chr5:95898334-95898335|-/T|frameshift_variant;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2852783203125	2	519.284931	1036.55531	1.6043	0.00083306	-0.3366	-0.00017479	1.2676	0.00065827	519.2847627903407	34.969	0.56181	34.969	34.717	35.279	0					22	10	4	0	0	0	0.070127	1	13468	13468		91.265	52.459	1	1729400			41839	905	27810	27924	42384	42384					0.03849439097666618
TAIREAQTF	9	Unmodified	_TAIREAQTF_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7749633789062	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.175	1	28.175	27.675	28.675	0								0	0	0	0.19616	1	8772	8772		51.528	16.376	1				41840	277	27811	27925	42385	42385					0.018562684378366612
TAIREAQTF	9	Unmodified	_TAIREAQTF_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7755126953125	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.438	1	28.438	27.938	28.938	0								0	0	0	0.039046	1	10049	10049		91.265	18.386	1				41841	277	27811	27925	42386	42386					0.018562684378366612
TAIREAQTF	9	Unmodified	_TAIREAQTF_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.7741088867188	2	518.774731	1035.53491	0.14155	7.3434E-05	0.099748	5.1747E-05	0.2413	0.00012518	518.7749756814185	28.208	0.2622	28.208	28.15	28.412	0					16	9	3	0	0	0	0.27123	1	9062	9062		53.089	13.836	1	320950			41842	277	27811	27925	42387	42387					0.018562684378366612
TAIREAQTF	9	Unmodified	_TAIREAQTF_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7749633789062	2	518.774731	1035.53491	1.5939	0.00082687	-1.4191	-0.00073621	0.17476	9.0659E-05	518.7738650886666	28.5	0.31302	28.5	28.415	28.728	0					10	6	2	0	0	0	0.11411	1	10447	10447		76.17	26.634	1	1611500			41843	277	27811	27925	42388	42388					0.018562684378366612
TAIREAQTF	9	Unmodified	_TAIREAQTF_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.77490234375	2	518.774731	1035.53491	1.5906	0.00082518	-1.8978	-0.00098452	-0.30714	-0.00015934	518.7735544855859	28.424	0.46482	28.424	28.294	28.758	0					22	9	3	0	0	0	0.061298	1	10295	10295		91.265	27.731	1	2110500			41844	277	27811	27925	42389	42389					0.018562684378366612
TAIRSGLEL	9	Unmodified	_TAIRSGLEL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2792663574219	2	480.279649	958.544745	0.49931	0.00023981	-1.1752	-0.00056443	-0.67591	-0.00032462	480.2792786533803	35.358	0.38235	35.358	35.268	35.651	0					21	10	3	0	0	0	0.061298	1	13257	13257		91.265	16.222	1	399710			41845	3238	27812	27926	42390	42390					0.06381456443239131
TAISVIKNL	9	Unmodified	_TAISVIKNL_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45332201-45332396:-|nuORF	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.8000793457031	2	479.800217	957.585882	0.026102	1.2524E-05	-0.75626	-0.00036285	-0.73015	-0.00035033	479.7998371514783	35.136	0.29218	35.136	35.011	35.303	0					30	13	3	0	0	0	0.0792	1	11494	11494		84.916	10.941	1	444520			41846	4772	27813	27927	42391	42391					0.1053921748269886
TAISVIKNL	9	Unmodified	_TAISVIKNL_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45332201-45332396:-|nuORF	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.79998779296875	2	479.800217	957.585882	-0.48223	-0.00023137	-0.04923	-2.3621E-05	-0.53146	-0.00025499	479.80005464067943	35.417	0.26727	35.417	35.304	35.571	0					11	7	2	0	0	0	0.50858	1	13710	13710		31.53	1.2121	1	152270			41847	4772	27813	27927	42392	42392					0.1053921748269886
TAIVDKIGF	9	Unmodified	_TAIVDKIGF_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2792663574219	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.415	1	42.415	41.915	42.915	0								0	0	0	0.17378	1	16072	16072		54.776	10.66	1				41848	7746	27814	27928	42393	42393					0.06091242074330694
TAIVDKIGF	9	Unmodified	_TAIVDKIGF_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2789611816406	2	482.279118	962.543683	0.89859	0.00043337	-1.0581	-0.00051028	-0.15947	-7.6911E-05	482.27859970299215	42.299	0.46362	42.299	42.17	42.634	0					15	12	2	0	0	0	0.10506	1	16867	16867		78.264	11.835	1	265300			41849	7746	27814	27928	42394	42394					0.06091242074330694
TAIVDKIGF	9	Unmodified	_TAIVDKIGF_					0	0	0		IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2787780761719	2	482.279118	962.543683	2.3826	0.0011491	-2.0705	-0.00099854	0.31217	0.00015055	482.2783502671117	42.279	0.20918	42.279	42.198	42.407	0					9	5	2	0	0	0	0.1424	1	16877	16877		69.628	16.276	1	95334			41850	7746	27814	27928	42395	42395					0.06091242074330694
TAIVHIQLI	9	Unmodified	_TAIVHIQLI_					0	0	0		ENSG00000104154|ENST00000261867|SLC30A4	ENSG00000104154|ENST00000261867|SLC30A4	ENSG00000104154|ENST00000261867|SLC30A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.31610107421875	2	504.316035	1006.61752	0.77219	0.00038943	-0.71697	-0.00036158	0.055219	2.7848E-05	504.3157413857601	36.175	0.16449	36.175	36.057	36.222	0					6	4	2	0	0	0	0.47038	1	13618	13618		35.618	0	1	95024			41851	2271	27815	27929	42396	42396					0.11447210236656247
TAIVSFGKKA	10	Unmodified	_TAIVSFGKKA_					0	0	0			REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.2060546875	3	341.206203	1020.59678	0.50967	0.0001739	-0.41754	-0.00014247	0.092128	3.1435E-05	341.2059745966514	23.043	0.30586	23.043	22.958	23.263	0					18	7	4	0	0	0	0.69166	1	7579	7579		21.686	0	1	1148400	+		41852	21780	27816	27930	42397	42397					0.08730619856999056
TAIVSFGKKA	10	Unmodified	_TAIVSFGKKA_					0	0	0			REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	341.20611572265625	3	341.206203	1020.59678	0.52687	0.00017977	-0.55642	-0.00018985	-0.029552	-1.0083E-05	341.2059758312327	22.986	0.41837	22.986	22.828	23.246	0					19	8	4	0	0	0	0.7005	1	7844	7844		27.047	7.0168	1	1502000	+		41853	21780	27816	27930	42398	42398					0.08730619856999056
TAKCPVTVWL	10	Unmodified	_TAKCPVTVWL_					0	0	0		ENST00000416708.1_1_7:46017982-46019554:+|nuORF	ENST00000416708.1_1_7:46017982-46019554:+|nuORF	ENST00000416708.1_1_7:46017982-46019554:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098693847656	3	373.207327	1116.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.443	1	39.443	38.943	39.943	0								0	0	0	0.4044	1	15589	15589		29.17	0.59333	1				41854	9365	27817	27931	42399	42399					0.04651546639342996
TAKEELEVAK	10	Unmodified	_TAKEELEVAK_					0	0	0		tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098388671875	3	373.208161	1116.60265	3.2233	0.0012029	0.78366	0.00029247	4.0069	0.0014954	373.2086851413715	22.261	5.8436	22.261	21.953	27.797	0					242	115	5	0	0	0	0.32758	1	7362	7362		66.962	12.24	1	47596000			41855	23015	27818	27932	42400	42400					0.04901673578001464
TAKEIINVG	9	Unmodified	_TAKEIINVG_					0	0	0		CA1|p.H65Afs*8|1|0.33|ENSG00000133742|chr8:85338294-85338295|-/C|frameshift_variant;ENST00000520093.5_1_8:86250427-86253864:-|nuORF;ENSG00000133742|ENST00000523022|CA1	CA1|p.H65Afs*8|1|0.33|ENSG00000133742|chr8:85338294-85338295|-/C|frameshift_variant	CA1|p.H65Afs*8|1|0.33|ENSG00000133742|chr8:85338294-85338295|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7742004394531	2	472.7742	943.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.74	1	24.74	24.24	25.24	0								0	0	0	0.19847	1	8366	8366		51.193	0	1				41856	338	27819	27933	42401	42401					0.05982054068954312
TAKELSLVNK	10	Unmodified	_TAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8278198242188	2	551.826963	1101.63937	0.45224	0.00024956	0.069762	3.8496E-05	0.52201	0.00028806	551.827019480604	27.972	0.16574	27.972	27.863	28.029	0					6	3	2	0	0	0	0.011683	1	10184	10184		136.52	67.669	1	287300			41857	1248	27820	27934	42402	42402					0.09261970194552305
TAKELSLVNK	10	Unmodified	_TAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.8273315429688	2	551.826963	1101.63937	0.74786	0.00041269	-0.032131	-1.7731E-05	0.71573	0.00039496	551.8270343030605	27.918	0.2127	27.918	27.813	28.026	0					9	4	3	0	0	0	0.0068379	1	10063	10063		159.34	97.645	1	378200			41858	1248	27820	27934	42403	42403					0.09261970194552305
TAKFLQLFG	9	Unmodified	_TAKFLQLFG_					0	0	0		TRIM47|p.D438del|1|0.31|ENSG00000132481|chr17:75875086-75875088|GTC/-|inframe_deletion	TRIM47|p.D438del|1|0.31|ENSG00000132481|chr17:75875086-75875088|GTC/-|inframe_deletion	TRIM47|p.D438del|1|0.31|ENSG00000132481|chr17:75875086-75875088|GTC/-|inframe_deletion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	342.1988525390625	3	342.199049	1023.57532	-0.74108	-0.0002536	0.71224	0.00024373	-0.028845	-9.8706E-06	342.19920902374395	25.192	0.3498	25.192	25.03	25.38	0					23	11	3	0	0	0	0.61124	1	7784	7784		14.137	1.9303	1	642690			41859	23064	27821	27935	42404	42404					0.06447234828283399
TAKGAGAPK	9	Unmodified	_TAKGAGAPK_					0	0	0			REV__ENST00000419888.1_1_20:18763070-18763415:-|nuORF	REV__ENST00000419888.1_1_20:18763070-18763415:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.73480224609375	2	400.734877	799.455202	-0.13086	-5.2442E-05	-0.17585	-7.0471E-05	-0.30672	-0.00012291	400.73495019408125	19.068	0.18855	19.068	18.975	19.164	0					7	4	2	0	0	0	0.2873	1	5114	5114		51.335	6.8044	1	239770	+		41860	19065	27822	27936	42405	42405					0.04745246554523419
TAKGAGAPK	9	Unmodified	_TAKGAGAPK_					0	0	0			REV__ENST00000419888.1_1_20:18763070-18763415:-|nuORF	REV__ENST00000419888.1_1_20:18763070-18763415:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.73480224609375	2	400.734877	799.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.211	1	19.211	18.711	19.711	0								0	0	0	0.14033	1	5895	5895		62.107	1.1355	1		+		41861	19065	27822	27936	42406	42406					0.04745246554523419
TAKGFATVL	9	Unmodified	_TAKGFATVL_					0	0	0		nc|ENSG00000198874|Q9NV66-2|TYW1;ENSG00000198874|ENST00000359626|TYW1	nc|ENSG00000198874|Q9NV66-2|TYW1	nc|ENSG00000198874|Q9NV66-2|TYW1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.2657470703125	2	454.26601	906.517468	0.062365	2.833E-05	-0.35721	-0.00016227	-0.29485	-0.00013394	454.26573951305306	37.789	0.11137	37.789	37.717	37.828	0					8	5	2	0	0	0	0.51817	1	13519	13519		30.504	1.3541	1	50173			41862	7631	27823	27937	42407	42407					0.060469729028341135
TAKGRAAAESR	11	Unmodified	_TAKGRAAAESR_					0	0	0			REV__MEOX2|p.P118Qfs*98|1|0.52|ENSG00000106511|chr7:15686050-15686050|G/-|frameshift_variant	REV__MEOX2|p.P118Qfs*98|1|0.52|ENSG00000106511|chr7:15686050-15686050|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099609375	3	373.207266	1116.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.857	1	37.857	37.357	38.357	0								0	0	0	0.35382	1	14836	14836		44.639	8.3218	1		+		41863	20877	27824	27938	42408	42408					0.04633262963693596
TAKLKEVAEE	10	Unmodified	_TAKLKEVAEE_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.20953369140625	3	373.208161	1116.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.165	1	45.165	44.665	45.665	0								0	0	0	0.40862	1	17505	17505		32.751	5.7032	1		+		41864	15923	27825	27939	42409	42409					0.04901673578001464
TAKLMWQPRK	10	Unmodified	_TAKLMWQPRK_					0	0	0			REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant	REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.241943359375	3	420.241142	1257.7016	1.0606	0.00044569	0.59321	0.00024929	1.6538	0.00069498	420.2416138021116	18.9	0.071075	18.9	18.865	18.936	0					4	2	2	0	0	0	0.63019	1	5614	5614		30.569	7.9892	1	712470	+		41865	21482	27826	27940	42410	42410					0.0830541806187739
TAKNIIKQ	8	Unmodified	_TAKNIIKQ_					0	0	0		nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-4|VPS54	nc|ENSG00000143952|Q9P1Q0-4|VPS54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2838134765625	2	458.284734	914.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.645	1	12.645	12.145	13.145	0								0	0	0	1.7419	1	2741	2741		11.511	0	1				41866	4591	27827	27941	42411	42411					0.09422064168472843
TAKPKAAKPK	10	Unmodified	_TAKPKAAKPK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3351440429688	2	520.334759	1038.65496	1.4293	0.0007437	-0.099825	-5.1943E-05	1.3294	0.00069175	520.334503404975	11.331	0.096087	11.331	11.259	11.355	0					10	5	2	0	0	0	0.3783	1	2168	2168		46.457	0	1	106330			41867	6080	27828	27942	42412	42412					0.13718301502262875
TAKPKAAKPK	10	Unmodified	_TAKPKAAKPK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.8373413085938	2	520.334759	1038.65496	0.33258	0.00017305	1.2894	0.00067093	1.622	0.00084399	520.3353665169263	11.355	0.1261	11.355	11.259	11.385	0					11	7	2	0	0	0	0.42408	1	2188	2188		41.427	0	1	129930			41868	6080	27828	27942	42413	42413					0.13718301502262875
TAKQPQSITL	10	Unmodified	_TAKQPQSITL_					0	0	0			REV__ARFGEF3|p.E1064Sfs*10|1|0.29|ENSG00000112379|chr6:138291869-138291869|C/-|frameshift_variant	REV__ARFGEF3|p.E1064Sfs*10|1|0.29|ENSG00000112379|chr6:138291869-138291869|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.810546875	2	543.811313	1085.60807	-0.19377	-0.00010538	0.88556	0.00048158	0.69179	0.0003762	543.811725276819	16.323	0.11464	16.323	16.231	16.346	0					8	4	2	0	0	0	0.63224	1	3869	3869		30.318	1.1477	1	144620	+		41869	12196	27829	27943	42414	42414					0.06869397160471635
TAKRATQKT	9	Unmodified	_TAKRATQKT_					0	0	0			REV__ENSG00000269466|ENST00000598383|H3Y1	REV__ENSG00000269466|ENST00000598383|H3Y1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.5331115722656	3	335.533091	1003.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.149	1	22.149	21.649	22.649	0								0	0	0	0.35737	1	7150	7150		23.523	0	1		+		41870	17799	27830	27944	42415	42415					0.07579663566093586
TAKRGIFGK	9	Unmodified	_TAKRGIFGK_					0	0	0		ENSG00000214595|ENST00000356458|EML6;EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant;EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant;nc|ENSG00000214595|Q6ZMW3-2|EML6	ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	326.5344543457031	3	326.534543	976.581799	0.53061	0.00017326	-0.58545	-0.00019117	-0.054839	-1.7907E-05	326.5343158240216	20.928	0.40821	20.928	20.685	21.093	0					20	9	3	0	0	0	0.60058	1	6539	6539		21.686	2.5822	1	1333300			41871	7814	27831	27945	42416	42416					0.09257172779678058
TAKRVADRRNG	11	Unmodified	_TAKRVADRRNG_					0	0	0			REV__ENST00000450834.2_1_10:31597037-31607903:-|nuORF	REV__ENST00000450834.2_1_10:31597037-31607903:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.2381896972656	3	415.237448	1242.69051	1.0406	0.00043211	0.78176	0.00032462	1.8224	0.00075673	415.2378149601783	30.571	0.26752	30.571	30.487	30.754	0					20	6	4	0	0	0	0.74458	1	11027	11027		23.378	0.81632	1	2070500	+		41872	19236	27832	27946	42417	42417					0.07887732011977278
TAKSEELNLI	10	Unmodified	_TAKSEELNLI_					0	0	0			REV__ENSG00000159197|ENST00000290310|KCNE2	REV__ENSG00000159197|ENST00000290310|KCNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098083496094	3	373.208161	1116.60265	3.2233	0.0012029	0.78366	0.00029247	4.0069	0.0014954	373.2086851413715	22.261	5.8436	22.261	21.953	27.797	0					242	115	5	0	0	0	0.60076	1	7924	7924		31.634	9.8538	1	47596000	+		41873	15706	27833	27947	42418	42418					0.04901673578001464
TAKSKPTKKA	10	Unmodified	_TAKSKPTKKA_					0	0	0		TRDN|p.P576S|1|0.28|ENSG00000186439|chr6:123269861-123269861|G/A|missense_variant	TRDN|p.P576S|1|0.28|ENSG00000186439|chr6:123269861-123269861|G/A|missense_variant	TRDN|p.P576S|1|0.28|ENSG00000186439|chr6:123269861-123269861|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.888916015625	3	353.888874	1058.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.379	1	17.379	16.879	17.879	0								0	0	0	0.38467	1	4893	4893		35.178	1.0057	1				41874	23059	27834	27948	42419	42419					0.11781693777061264
TAKSVTCTY	9	Unmodified	_TAKSVTCTY_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S127T|1|0.68|ENSG00000141510|chr17:7675233-7675233|A/T|missense_variant;TP53|p.S127F|1|0.75|ENSG00000141510|chr17:7675232-7675232|G/A|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.23590087890625	2	487.236593	972.458632	-1.2444	-0.00060631	0.27902	0.00013595	-0.96537	-0.00047036	487.2367469727469	23.31	0.2817	23.31	23.211	23.493	0					18	9	3	0	0	0	0.026538	1	6979	6979		112.41	20.22	1	256710			41875	4452	27835	27949	42420	42420					-0.028698714537767955
TAKSVTCTY	9	Unmodified	_TAKSVTCTY_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S127T|1|0.68|ENSG00000141510|chr17:7675233-7675233|A/T|missense_variant;TP53|p.S127F|1|0.75|ENSG00000141510|chr17:7675232-7675232|G/A|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2364196777344	2	487.236593	972.458632	0.63185	0.00030786	-1.3837	-0.00067419	-0.75185	-0.00036633	487.2360272409749	23.504	0.3672	23.504	23.395	23.762	0					21	7	4	0	0	0	0.047855	1	8118	8118		96.034	33.926	1	1794200			41876	4452	27835	27949	42421	42421					-0.028698714537767955
TAKSVTCTY	9	Unmodified	_TAKSVTCTY_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S127T|1|0.68|ENSG00000141510|chr17:7675233-7675233|A/T|missense_variant;TP53|p.S127F|1|0.75|ENSG00000141510|chr17:7675232-7675232|G/A|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.23663330078125	2	487.236593	972.458632	-0.23144	-0.00011276	-0.58936	-0.00028716	-0.8208	-0.00039992	487.2361188497166	23.347	0.23492	23.347	23.251	23.486	0					8	5	2	0	0	0	0.18416	1	7102	7102		63.534	2.5619	1	286560			41877	4452	27835	27949	42422	42422					-0.028698714537767955
TAKSVTCTY	9	Unmodified	_TAKSVTCTY_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S127T|1|0.68|ENSG00000141510|chr17:7675233-7675233|A/T|missense_variant;TP53|p.S127F|1|0.75|ENSG00000141510|chr17:7675232-7675232|G/A|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.23626708984375	2	487.236593	972.458632	-2.9116	-0.0014187	2.1889	0.0010665	-0.72272	-0.00035213	487.2378279745306	23.334	0.23882	23.334	23.235	23.474	0					9	5	3	0	0	0	0.035062	1	7114	7114		104.06	43.763	1	249420			41878	4452	27835	27949	42423	42423					-0.028698714537767955
TAKSVTCTY	9	Unmodified	_TAKSVTCTY_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S127T|1|0.68|ENSG00000141510|chr17:7675233-7675233|A/T|missense_variant;TP53|p.S127F|1|0.75|ENSG00000141510|chr17:7675232-7675232|G/A|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2361755371094	2	487.236593	972.458632	0.81184	0.00039556	-1.603	-0.00078105	-0.79117	-0.00038549	487.23582596935057	23.475	0.46012	23.475	23.369	23.829	0					22	9	3	0	0	0	0.063171	1	7978	7978		90.601	29.629	1	1475100			41879	4452	27835	27949	42424	42424					-0.028698714537767955
TAKTNLLDEL	10	Unmodified	_TAKTNLLDEL_					0	0	0		nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;VRK2|p.I420Sfs*45|1|0.11|ENSG00000028116|chr2:58159419-58159419|A/-|frameshift_variant;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20965576171875	3	373.208161	1116.60265	3.2233	0.0012029	0.78366	0.00029247	4.0069	0.0014954	373.2086851413715	22.261	5.8436	22.261	21.953	27.797	0					242	115	5	0	0	0	0.44469	1	8307	8307		46.457	0	1	47596000			41880	1138	27836	27950	42425	42425					0.04901673578001464
TAKTPGPPG	9	Unmodified	_TAKTPGPPG_					0	0	0		ENST00000599885.1_2_19:21106143-21117778:+|nuORF;ENST00000596476.1_1_19:21106143-21116843:+|nuORF;ENST00000450302.2_1_7:64838841-64853745:+|nuORF;ENST00000291750.6_1_19:20829180-20844320:-|nuORF;ENST00000360204.5_1_19:20959154-20975331:+|nuORF;ENST00000488849.1_1_7:64838847-64852976:+|nuORF	ENST00000599885.1_2_19:21106143-21117778:+|nuORF	ENST00000599885.1_2_19:21106143-21117778:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.2267150878906	2	413.226885	824.439217	-0.15749	-6.5078E-05	-0.094831	-3.9187E-05	-0.25232	-0.00010427	413.22683716377435	15.438	1.2334	15.438	15.086	16.32	0					109	51	3	0	0	0	0.42902	1	3299	3299		39.253	0	1	747550			41881	8439	27837	27951	42426	42426					0.019975403176204054
TAKVGNDIIM	10	Unmodified	_TAKVGNDIIM_					0	0	0			REV__CEMIP|p.T745A|1|0.42|ENSG00000103888|chr15:80924651-80924651|A/G|missense_variant	REV__CEMIP|p.T745A|1|0.42|ENSG00000103888|chr15:80924651-80924651|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2869873046875	2	531.286617	1060.55868	3.4226	0.0018184	-4.4187	-0.0023476	-0.99619	-0.00052926	531.2849570483772	35.413	0.57544	35.413	35.145	35.721	0					30	11	4	0	0	0	0.2978	1	13679	13679		67.494	3.2864	1	739580	+		41882	12419	27838	27952	42427	42427					0.03082365880004545
TAKYKQKI	8	Unmodified	_TAKYKQKI_					0	0	0			REV__ENSG00000104537|ENST00000419625|ANXA13	REV__ENSG00000104537|ENST00000419625|ANXA13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.2012939453125	3	327.202682	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.05	1	50.05	49.55	50.55	0								0	0	0	1.7419	1	16431	16431		10.866	1.1599	1		+		41883	13732	27839	27953	42428	42428					0.09606637202557522
TALANQIPTV	10	Unmodified	_TALANQIPTV_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1990051269531	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.162	1	30.162	29.662	30.662	0								0	0	0	0.4146	1	11133	11133		26.063	1.5442	1				41884	1891	27840	27954	42429	42429					0.05873725614696923
TALGAVLVGL	10	Unmodified	_TALGAVLVGL_					0	0	0			REV__ENST00000451864.6_1_1:156351301-156354326:+|nuORF	REV__ENST00000451864.6_1_1:156351301-156354326:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.28955078125	2	457.289485	912.564418	0.045354	2.074E-05	-0.14689	-6.7172E-05	-0.10154	-4.6432E-05	457.28951074467744	36.801	0.42028	36.801	36.564	36.984	0					29	22	2	0	0	0	0.61887	1	12095	12095		31.955	1.4512	1	99767	+		41885	14672	27841	27955	42430	42430					0.10463832454001931
TALGFLGAAP	10	Unmodified	_TALGFLGAAP_					0	0	0		ENST00000421890.5_1_7:5862807-5863047:+|nuORF	ENST00000421890.5_1_7:5862807-5863047:+|nuORF	ENST00000421890.5_1_7:5862807-5863047:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.25921630859375	2	459.258185	916.501818	-0.93593	-0.00042983	4.1987	0.0019283	3.2627	0.0014984	459.2603453573778	34.008	0.12689	34.008	33.94	34.067	0					11	5	3	0	0	0	0.38575	1	11444	11444		57.811	6.4758	1	116900			41886	9404	27842	27956	42431	42431					0.04022686385803809
TALGFVLYK	9	Unmodified	_TALGFVLYK_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;nc|ENSG00000189221|P21397-2|MAOA	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2969665527344	2	506.29731	1010.58007	1.2557	0.00063577	-1.6013	-0.00081075	-0.34559	-0.00017497	506.29646572541253	44.84	0.15303	44.84	44.743	44.896	0					10	6	2	0	0	0	0.47038	1	17959	17959		35.618	2.8059	1	68235			41887	7310	27843	27957	42432	42432					0.07520118971035572
TALGFVLYK	9	Unmodified	_TALGFVLYK_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;nc|ENSG00000189221|P21397-2|MAOA	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2977294921875	2	506.29731	1010.58007	2.9363	0.0014867	-2.9181	-0.0014774	0.018219	9.2241E-06	506.29604065429663	44.834	0.12767	44.834	44.757	44.885	0					9	5	2	0	0	0	0.17854	1	17956	17956		64.207	23.635	1	79519			41888	7310	27843	27957	42433	42433					0.07520118971035572
TALHLWSE	8	Unmodified	_TALHLWSE_					0	0	0			REV__ENST00000575531.5_1_16:4407102-4412712:-|nuORF	REV__ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.7458190917969	2	478.745442	955.476331	0.65651	0.0003143	0.091929	4.401E-05	0.74844	0.00035831	478.74562383643064	42.222	0.19271	42.222	42.132	42.325	0					15	9	2	0	0	0	0.60719	1	16571	16571		47.916	3.7988	1	110140	+		41889	20411	27844	27958	42434	42434					-0.003187881366216061
TALHVAASL	9	Unmodified	_TALHVAASL_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ;ENST00000495719.1_1_3:101576051-101578212:+|nuORF	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.7556457519531	2	441.75581	881.497067	-0.33381	-0.00014746	-0.065864	-2.9096E-05	-0.39967	-0.00017656	441.75575774490886	32.941	0.23059	32.941	32.854	33.084	0					9	6	2	0	0	0	0.1236	1	12143	12143		73.975	0	1	210440			41890	4639	27845	27959	42435	42435					0.05157802243024889
TALLAAKATL	10	Unmodified	_TALLAAKATL_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.80804443359375	2	486.808042	971.601532	-0.69642	-0.00033902	0.41899	0.00020397	-0.27743	-0.00013506	486.80815040489176	29.316	0.14073	29.316	29.226	29.367	0					5	3	2	0	0	0	0.61187	1	10851	10851		32.812	3.6629	1	68707	+		41891	22139	27846	27960	42436	42436					0.11459503999742537
TALLLLPAAG	10	Unmodified	_TALLLLPAAG_					0	0	0		LRIG2|p.F260Lfs*3|1|0.29|ENSG00000198799|chr1:113094727-113094727|T/-|frameshift_variant;ENSG00000198799|ENST00000361127|LRIG2	LRIG2|p.F260Lfs*3|1|0.29|ENSG00000198799|chr1:113094727-113094727|T/-|frameshift_variant	LRIG2|p.F260Lfs*3|1|0.29|ENSG00000198799|chr1:113094727-113094727|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.296875	2	470.29731	938.580068	-2.2741	-0.0010695	1.55	0.00072898	-0.72406	-0.00034052	470.298152042081	33.403	0.10667	33.403	33.344	33.451	0					6	3	2	0	0	0	0.56015	1	11715	11715		38.806	1.647	1	61381			41892	7611	27847	27961	42437	42437					0.10832118971040927
TALLNGVP	8	Unmodified	_TALLNGVP_					0	0	0			REV__ENST00000442093.5_3_X:152988698-152989661:-|nuORF	REV__ENST00000442093.5_3_X:152988698-152989661:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.73150634765625	2	392.731803	783.449054	-0.66907	-0.00026277	0.51417	0.00020193	-0.1549	-6.0836E-05	392.7320366814813	19.631	0.71434	19.631	19.196	19.91	0					37	14	3	0	0	0	0.61938	1	6075	6075		45.952	7.1458	1	962160	+		41893	18479	27848	27962	42438	42438					0.0486672832299746
TALLPRPQ	8	Unmodified	_TALLPRPQ_					0	0	0		ENST00000379902.7_1_12:53457662-53457908:+|nuORF	ENST00000379902.7_1_12:53457662-53457908:+|nuORF	ENST00000379902.7_1_12:53457662-53457908:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2712707519531	2	448.271627	894.528701	-0.40925	-0.00018346	-0.078493	-3.5186E-05	-0.48774	-0.00021864	448.27157559684565	31.2	0.55548	31.2	30.881	31.437	0					17	11	2	0	0	0	0.67394	1	11621	11621		37.159	1.5408	1	162050			41894	9090	27849	27963	42439	42439					0.07721794996996323
TALNRRDTYR	10	Unmodified	_TALNRRDTYR_					0	0	0		KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.562744140625	3	422.56182	1264.66363	1.054	0.00044538	2.0235	0.00085507	3.0776	0.0013005	422.5625572350813	23.774	0.5118	23.774	23.619	24.13	0					23	10	4	0	0	0	0.5155	1	8122	8122		43.651	11.617	1	364610			41895	3912	27850	27964	42440	42440					0.04188623400796132
TALPLGSSR	9	Unmodified	_TALPLGSSR_					0	0	0		PVRIG|p.G79Afs*245|1|0.24|ENSG00000213413|chr7:100220225-100220225|G/-|frameshift_variant;ENST00000451963.1_2_7:99818046-99818860:+|nuORF;PVRIG|p.T86Pfs*238|1|0.32|ENSG00000213413|chr7:100220245-100220245|G/-|frameshift_variant	PVRIG|p.G79Afs*245|1|0.24|ENSG00000213413|chr7:100220225-100220225|G/-|frameshift_variant	PVRIG|p.G79Afs*245|1|0.24|ENSG00000213413|chr7:100220225-100220225|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2582702636719	2	451.258717	900.50288	-0.12697	-5.7297E-05	-3.7861	-0.0017085	-3.9131	-0.0017658	451.2572342926766	22.251	0.23263	22.251	22.157	22.39	0					12	5	3	0	0	0	0.24095	1	6586	6586		56.721	0.28726	1	230610			41896	11989	27851	27965	42441	42441					0.048649007547169276
TALRDVPF	8	Unmodified	_TALRDVPF_					0	0	0		ENST00000588315.5_1_17:42398345-42398600:-|nuORF;ENST00000592372.5_1_17:42397681-42398498:-|nuORF;ENST00000591006.5_1_17:42397371-42398600:-|nuORF;nc|ENSG00000013306|Q9BZJ4-2|SLC25A39;ENSG00000013306|ENST00000377095|SLC25A39	ENST00000588315.5_1_17:42398345-42398600:-|nuORF	ENST00000588315.5_1_17:42398345-42398600:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.75726318359375	2	459.75581	917.497067	4.2662	0.0019614	-1.214	-0.00055814	3.0522	0.0014033	459.7552340400107	23.626	0.14008	23.626	23.549	23.689	0					8	5	2	0	0	0	0.54629	1	7118	7118		55.504	0	1	125140			41897	1063	27852	27966	42442	42442					0.035018022430335805
TALSGRELNV	10	Unmodified	_TALSGRELNV_					0	0	0		ENSG00000147246|ENST00000276198|HTR2C	ENSG00000147246|ENST00000276198|HTR2C	ENSG00000147246|ENST00000276198|HTR2C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.86468505859375	3	353.864617	1058.57202	0.49155	0.00017394	-0.49393	-0.00017478	-0.0023836	-8.4349E-07	353.8644866578038	19.001	0.16982	19.001	18.913	19.083	0					7	4	3	0	0	0	0.71484	1	5646	5646		14.086	0	1	600090			41898	4771	27853	27967	42443	42443					0.04507939983614051
TALSSFLTK	9	Unmodified	_TALSSFLTK_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2768249511719	2	484.276575	966.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.953	1	40.953	40.453	41.453	0								0	0	0	0.17378	1	16104	16104		54.776	7.119	1				41899	3781	27854	27968	42444	42444					0.053989382117038076
TALSSFLTK	9	Unmodified	_TALSSFLTK_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2757263183594	2	484.276575	966.538597	-0.585	-0.0002833	-0.45677	-0.00022121	-1.0418	-0.00050451	484.2763868703874	40.9	0.32831	40.9	40.762	41.091	0					8	5	2	0	0	0	0.27249	1	16243	16243		52.937	1.6012	1	150280			41900	3781	27854	27968	42445	42445					0.053989382117038076
TALVMKRGF	9	Unmodified	_TALVMKRGF_					0	0	0			REV__ENST00000526679.1_1_11:36420290-36422672:+|nuORF	REV__ENST00000526679.1_1_11:36420290-36422672:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.794921875	2	511.794412	1021.57427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.254	1	34.254	33.754	34.754	0								0	0	0	0.28666	1	11193	11193		30.504	5.0535	1		+		41901	19999	27855	27969	42446	42446					0.06434697187728489
TAMAAAKAPTK	11	Unmodified	_TAMAAAKAPTK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.79443359375	2	530.794609	1059.57467	0.40923	0.00021722	-0.99388	-0.00052755	-0.58465	-0.00031033	531.294891055658	17.106	0.23857	17.106	16.903	17.142	0					13	8	2	0	0	0	0.080197	1	3979	3979		77.288	22.511	1	724950			41902	2846	27856	27970	42447	42447					0.04726072116909563
TAMAAAKAPTK	11	Unmodified	_TAMAAAKAPTK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7949829101562	2	530.794609	1059.57467	0.11887	6.3097E-05	-1.8646	-0.00098972	-1.7457	-0.00092662	531.2948037712409	17.419	0.32708	17.419	17.172	17.499	0					24	8	4	0	0	0	0.00047263	1	4879	4879		133.91	71.804	1	4253900			41903	2846	27856	27970	42448	42448					0.04726072116909563
TAMAAAKAPTK	11	Unmodified	_TAMAAAKAPTK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.1988830566406	3	354.198831	1059.57467	0.49107	0.00017394	-1.2145	-0.00043018	-0.72345	-0.00025625	354.198613249476	17.415	0.32708	17.415	17.172	17.499	0					27	8	5	0	0	0	0.14512	1	4881	4881		80.871	34.898	1	1232200			41904	2846	27856	27970	42449	42449					0.04726072116909563
TAMAAAKAPTK	11	Unmodified	_TAMAAAKAPTK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2974243164062	2	530.794609	1059.57467	-0.11304	-6.0002E-05	-0.52728	-0.00027988	-0.64032	-0.00033988	530.7945285603046	17.142	0.22678	17.142	16.993	17.22	0					15	7	3	0	0	0	0.024125	1	4221	4221		100.82	49.627	1	552000			41905	2846	27856	27970	42450	42450					0.04726072116909563
TAMAAAKAPTK	11	Unmodified	_TAMAAAKAPTK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7949829101562	2	530.794609	1059.57467	1.7252	0.00091571	-2.1878	-0.0011613	-0.46261	-0.00024555	530.793960429445	17.397	0.35155	17.397	17.149	17.5	0					16	7	3	0	0	0	8.6112E-09	1	5129	5129		178.54	101.22	1	1738600			41906	2846	27856	27970	42451	42451					0.04726072116909563
TAMAAAKAPTK	11	Unmodified	_TAMAAAKAPTK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.296875	2	530.794609	1059.57467	-1.2283	-0.00065196	-0.25617	-0.00013598	-1.4844	-0.00078794	531.2955362753147	17.164	0.23666	17.164	16.991	17.227	0					20	7	4	0	0	0	0.10141	1	4188	4188		72.096	26.123	1	817530			41907	2846	27856	27970	42452	42452					0.04726072116909563
TAMAAAKAPTK	11	Unmodified	_TAMAAAKAPTK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.19873046875	3	354.198831	1059.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.088	1	17.088	16.588	17.588	0								0	0	0	0.38772	1	4189	4189		39.873	1.1195	1				41908	2846	27856	27970	42453	42453					0.04726072116909563
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_		TAM(1)DVVYALK		TAM(55)DVVYALK	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.2962036132812	2	563.794275	1125.574	1.7801	0.0010036	3.2693	0.0018432	5.0494	0.0028468	564.2958633135794	35.036	0.17159	35.036	34.954	35.126	0					6	4	2	0	0	0	0.41384	1	13119	13119		54.722	16.911	1	47877			41909	5259	27857	27971	42454	42454		212			0.016232326772069428
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_		TAM(1)DVVYALK		TAM(48)DVVYALK	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7955932617188	2	563.794275	1125.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.066	1	35.066	34.566	35.566	0								0	0	0	0.3185	1	13562	13562		47.96	16.43	1				41910	5259	27857	27971	42455	42455		212			0.016232326772069428
TAMDVVYALK	10	Unmodified	_TAMDVVYALK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7974243164062	2	555.796817	1109.57908	1.8115	0.0010068	-0.1666	-9.2597E-05	1.6449	0.00091421	555.7968067164318	43.254	0.25937	43.254	43.17	43.429	0					25	15	3	0	0	0	0.46128	1	16320	16320		49.536	21.654	1	108060			41911	5259	27857	27972	42456	42456					0.028675365398157737
TAMDVVYALK	10	Unmodified	_TAMDVVYALK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7982788085938	2	555.796817	1109.57908	0.54241	0.00030147	2.2023	0.001224	2.7447	0.0015255	555.7976703458669	43.22	0.17136	43.22	43.137	43.308	0					14	9	2	0	0	0	0.41384	1	16930	16930		54.722	23.193	1	103760			41912	5259	27857	27972	42457	42457					0.028675365398157737
TAMDVVYALK	10	Unmodified	_TAMDVVYALK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7981567382812	2	555.796817	1109.57908	1.6772	0.00093221	0.13364	7.4274E-05	1.8109	0.0010065	555.7971119611249	43.212	0.2188	43.212	43.148	43.366	0					20	12	3	0	0	0	0.39827	1	16917	16917		56.434	23.621	1	200290			41913	5259	27857	27972	42458	42458					0.028675365398157737
TAMDVVYALK	10	Unmodified	_TAMDVVYALK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7972412109375	2	555.796817	1109.57908	1.0951	0.00060866	0.42084	0.0002339	1.516	0.00084256	555.7971862611844	43.127	0.34387	43.127	43.035	43.378	0					20	11	3	0	0	0	0.041742	1	17259	17259		112.11	45.678	1	386060			41914	5259	27857	27972	42459	42459					0.028675365398157737
TAMDVVYALK	10	Unmodified	_TAMDVVYALK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.79736328125	2	555.796817	1109.57908	1.8222	0.0010128	-0.81314	-0.00045194	1.0091	0.00056084	555.7963463498182	43.167	0.34559	43.167	43.023	43.368	0					25	11	3	0	0	0	0.041742	1	17252	17252		112.11	34.79	1	498390			41915	5259	27857	27972	42460	42460					0.028675365398157737
TAMFIASKY	9	Unmodified	_TAMFIASKY_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.264892578125	2	516.265153	1030.51575	0.035919	1.8544E-05	0.025467	1.3148E-05	0.061387	3.1692E-05	516.2649458490345	37.175	0.26578	37.175	37.026	37.292	0					13	7	2	0	0	0	0.13726	1	14061	14061		70.816	19.624	1	245300			41916	3889	27858	27973	42461	42461					0.0017159582259864692
TAMFIASKY	9	Unmodified	_TAMFIASKY_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2652587890625	2	516.265153	1030.51575	1.4583	0.00075289	-1.0776	-0.00055635	0.38071	0.00019655	516.2645515716218	37.102	0.20964	37.102	37.027	37.237	0					12	6	2	0	0	0	0.11411	1	14506	14506		76.17	26.634	1	387810			41917	3889	27858	27973	42462	42462					0.0017159582259864692
TAMFIASKY	9	Unmodified	_TAMFIASKY_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2659301757812	2	516.265153	1030.51575	-1.5088	-0.00077893	3.0116	0.0015548	1.5029	0.00077587	516.2668920836707	36.91	0.13263	36.91	36.842	36.974	0					9	5	3	0	0	0	0.095583	1	13207	13207		80.455	17.148	1	71291			41918	3889	27858	27973	42463	42463					0.0017159582259864692
TAMFIASKY	9	Unmodified	_TAMFIASKY_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2654418945312	2	516.265153	1030.51575	3.2819	0.0016943	-3.0432	-0.0015711	0.23867	0.00012322	516.2637823127488	37.049	0.459	37.049	36.744	37.203	0					18	9	4	0	0	0	0.037712	1	14459	14459		101.46	33.966	1	701800			41919	3889	27858	27973	42464	42464					0.0017159582259864692
TAMLPSSKR	9	Unmodified	_TAMLPSSKR_					0	0	0		ABCA12|p.Q747K|1|0.05|ENSG00000144452|chr2:215011532-215011532|G/T|missense_variant	ABCA12|p.Q747K|1|0.05|ENSG00000144452|chr2:215011532-215011532|G/T|missense_variant	ABCA12|p.Q747K|1|0.05|ENSG00000144452|chr2:215011532-215011532|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.7735900878906	2	495.773677	989.5328	-1.2075	-0.00059866	0.98146	0.00048658	-0.22607	-0.00011208	495.77426379856036	22.013	0.25577	22.013	21.852	22.108	0					17	8	4	0	0	0	0.0792	1	6379	6379		84.916	9.8722	1	165350			41920	4	27859	27974	42465	42465					0.037615164284147795
TAMNGNLAK	9	Unmodified	_TAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.2369689941406	2	460.236927	918.459301	0.084965	3.9104E-05	-0.36393	-0.00016749	-0.27896	-0.00012839	460.2369113315656	20	0.10375	20	19.939	20.043	0					5	3	2	0	0	0	0.20551	1	5288	5288		60.972	5.4677	1	89838			41921	7030	27860	27975	42466	42466					-0.0031903201407885717
TAMNGNLAK	9	Unmodified	_TAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2366027832031	2	460.236927	918.459301	0.82054	0.00037764	3.6582	0.0016836	4.4787	0.0020613	460.2384756997504	20.367	0.52619	20.367	20.29	20.816	0					26	11	3	0	0	0	0.055856	1	6310	6310		93.195	18.679	1	794790			41922	7030	27860	27975	42467	42467					-0.0031903201407885717
TAMNGNLAK	9	Unmodified	_TAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2364807128906	2	460.236927	918.459301	-0.8945	-0.00041168	0.76071	0.00035011	-0.13379	-6.1575E-05	460.2374563351696	20.043	0.18583	20.043	19.976	20.162	0					9	6	2	0	0	0	0.07136	1	5537	5537		87.696	28.914	1	116850			41923	7030	27860	27975	42468	42468					-0.0031903201407885717
TAMNGNLAK	9	Unmodified	_TAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.237548828125	2	460.236927	918.459301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.127	1	20.127	19.627	20.627	0								0	0	0	0.13137	1	5601	5601		64.207	14.766	1				41924	7030	27860	27975	42469	42469					-0.0031903201407885717
TAMNGNLAK	9	Unmodified	_TAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2368469238281	2	460.236927	918.459301	-2.564	-0.0011801	2.4753	0.0011392	-0.08876	-4.0851E-05	460.2379137727467	20.082	0.089447	20.082	20.04	20.129	0					4	2	2	0	0	0	0.19605	1	5589	5589		62.107	16.155	1	44739			41925	7030	27860	27975	42470	42470					-0.0031903201407885717
TAMNGNLAK	9	Unmodified	_TAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2367858886719	2	460.236927	918.459301	-0.45288	-0.00020843	3.6348	0.0016729	3.1819	0.0014644	460.23867763729464	20.251	0.46577	20.251	20.143	20.609	0					23	9	3	0	0	0	0.1115	1	6416	6416		76.774	2.5191	1	605750			41926	7030	27860	27975	42471	42471					-0.0031903201407885717
TAMNGNLAK	9	Unmodified	_TAMNGNLAK_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2366943359375	2	460.236927	918.459301	0.87199	0.00040132	3.6152	0.0016638	4.4872	0.0020652	460.23845078773525	20.5	0.51631	20.5	20.176	20.692	0					23	10	3	0	0	0	0.098791	1	6408	6408		79.713	22.992	1	593870			41927	7030	27860	27975	42472	42472					-0.0031903201407885717
TAMQCRKK	8	Oxidation (M)	_TAM(Oxidation (M))QCRKK_		TAM(1)QCRKK		TAM(89)QCRKK	0	0	1		ADAM23|p.N82Ifs*87|1|0.39|ENSG00000114948|chr2:206445331-206445331|A/-|frameshift_variant	ADAM23|p.N82Ifs*87|1|0.39|ENSG00000114948|chr2:206445331-206445331|A/-|frameshift_variant	ADAM23|p.N82Ifs*87|1|0.39|ENSG00000114948|chr2:206445331-206445331|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.253662109375	2	491.252054	980.489555	2.6944	0.0013236	0.35587	0.00017482	3.0502	0.0014984	491.25217176379965	18.872	0.39483	18.872	18.784	19.179	0					24	8	4	0	0	0	0.28158	1	5721	5721		88.643	88.643	1	8774100			41928	52	27861	27976	42473	42473		1			-0.0014699662052635176
TAMSERALAQK	11	Unmodified	_TAMSERALAQK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	603.3191528320312	2	603.31898	1204.62341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.226	1	21.226	20.726	21.726	0								0	0	0	0.058673	1	7005	7005		84.817	11.938	1				41929	5298	27862	27977	42474	42474					0.029279406859814117
TAMSSVLAK	9	Unmodified	_TAMSSVLAK_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.24981689453125	2	454.249503	906.484453	0.60851	0.00027641	-0.17214	-7.8193E-05	0.43637	0.00019822	454.2496398475427	27.998	0.11612	27.998	27.94	28.056	0					5	4	2	0	0	0	0.18416	1	8692	8692		63.534	30.721	1	65475			41930	2488	27863	27978	42475	42475					0.02747022788491904
TAMSSVLAK	9	Unmodified	_TAMSSVLAK_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.2498779296875	2	454.249503	906.484453	0.28815	0.00013089	-0.20678	-9.393E-05	0.081371	3.6963E-05	454.249598543338	28.27	0.25731	28.27	28.178	28.435	0					15	6	4	0	0	0	0.037924	1	9962	9962		101.25	53.595	1	369530			41931	2488	27863	27978	42476	42476					0.02747022788491904
TAMTKALAL	9	Unmodified	_TAMTKALAL_					0	0	0		ENSG00000087076|ENST00000263278|HSD17B14	ENSG00000087076|ENST00000263278|HSD17B14	ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2674560546875	2	460.267696	918.520839	-0.45179	-0.00020794	-0.148	-6.8119E-05	-0.59979	-0.00027606	460.2676036255373	36.346	0.26323	36.346	36.233	36.496	0					6	5	2	0	0	0	0.19605	1	14125	14125		62.107	1.1355	1	110630			41932	1756	27864	27979	42477	42477					0.0583189968519946
TANALALAM	9	Unmodified	_TANALALAM_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.23626708984375	2	438.236396	874.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.458	1	47.458	46.958	47.958	0								0	0	0	0.022698	1	17409	17409		99.375	43.871	1				41933	4494	27865	27980	42478	42478					0.015987536170200656
TANALALAM	9	Unmodified	_TANALALAM_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.23614501953125	2	438.236396	874.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.379	1	47.379	46.879	47.879	0								0	0	0	0.1633	1	18104	18104		56.721	1.2168	1				41934	4494	27865	27980	42479	42479					0.015987536170200656
TANALALAM	9	Unmodified	_TANALALAM_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2365417480469	2	438.236396	874.458238	-0.57385	-0.00025148	0.64024	0.00028058	0.066392	2.9095E-05	438.23669505448237	47.334	0.074005	47.334	47.296	47.37	0					7	4	2	0	0	0	0.24095	1	18906	18906		56.721	10.769	1	55310			41935	4494	27865	27980	42480	42480					0.015987536170200656
TANDANTKY	9	Unmodified	_TANDANTKY_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.23345947265625	2	499.232896	996.451239	0.28989	0.00014472	0.10714	5.3489E-05	0.39703	0.00019821	499.232907054061	16.891	0.14612	16.891	16.821	16.967	0					10	6	2	0	0	0	0.099758	1	3926	3926		79.489	36.625	1	108910			41936	4865	27866	27981	42481	42481					-0.047128877298746374
TANDANTKY	9	Unmodified	_TANDANTKY_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.23248291015625	2	499.232896	996.451239	0.67546	0.00033721	-0.98503	-0.00049176	-0.30957	-0.00015455	499.23237635420526	17.188	0.29905	17.188	17.058	17.357	0					17	7	4	0	0	0	0.039418	1	4796	4796		99.788	45.012	1	1175400			41937	4865	27866	27981	42482	42482					-0.047128877298746374
TANDANTKY	9	Unmodified	_TANDANTKY_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.23309326171875	2	499.232896	996.451239	-0.21458	-0.00010713	0.55622	0.00027769	0.34164	0.00017056	499.2329919182981	17.181	0.1741	17.181	17.088	17.262	0					8	4	2	0	0	0	0.24169	1	4808	4808		56.632	12.101	1	381950			41938	4865	27866	27981	42483	42483					-0.047128877298746374
TANDANTKY	9	Unmodified	_TANDANTKY_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2333679199219	2	499.232896	996.451239	-1.0594	-0.00052889	1.7637	0.0008805	0.70429	0.00035161	499.2338757422885	16.929	0.16207	16.929	16.869	17.031	0					15	6	3	0	0	0	0.034688	1	4138	4138		104.42	38.62	1	300550			41939	4865	27866	27981	42484	42484					-0.047128877298746374
TANDANTKY	9	Unmodified	_TANDANTKY_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2326965332031	2	499.232896	996.451239	0.16712	8.3432E-05	0.77457	0.00038669	0.94169	0.00047012	499.23321729578174	16.935	0.16358	16.935	16.846	17.01	0					8	4	2	0	0	0	0.039418	1	4110	4110		99.788	46.436	1	256350			41940	4865	27866	27981	42485	42485					-0.047128877298746374
TANDANTKY	9	Unmodified	_TANDANTKY_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.23291015625	2	499.232896	996.451239	-2.1717	-0.0010842	2.5935	0.0012947	0.42172	0.00021053	499.23420877349105	16.925	0.19699	16.925	16.834	17.031	0					10	5	3	0	0	0	0.070005	1	4120	4120		88.177	24.871	1	381280			41941	4865	27866	27981	42486	42486					-0.047128877298746374
TANDANTKY	9	Unmodified	_TANDANTKY_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.23272705078125	2	499.232896	996.451239	1.0592	0.00052877	-1.2205	-0.00060934	-0.16139	-8.0571E-05	499.23226497997564	17.133	0.27153	17.133	17.022	17.293	0					16	5	4	0	0	0	0.029172	1	4895	4895		109.83	55.053	1	2917900			41942	4865	27866	27981	42487	42487					-0.047128877298746374
TANDRILKY	9	Unmodified	_TANDRILKY_					0	0	0		ENSG00000100271|ENST00000266254|TTLL1;nc|ENSG00000100271|O95922-4|TTLL1	ENSG00000100271|ENST00000266254|TTLL1	ENSG00000100271|ENST00000266254|TTLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	365.2047119140625	3	365.204862	1092.59276	-0.13088	-4.7799E-05	-0.13313	-4.862E-05	-0.26402	-9.642E-05	365.2047902035425	26.359	0.32016	26.359	26.25	26.57	0					13	6	4	0	0	0	0.50461	1	9316	9316		47.657	16.128	1	487080			41943	1993	27867	27982	42488	42488					0.050165303632638825
TANEANPLK	9	Unmodified	_TANEANPLK_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.25384521484375	2	479.253631	956.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.133	1	21.133	20.633	21.633	0								0	0	0	0.29356	1	6670	6670		36.447	8.5645	1				41944	7194	27868	27983	42489	42489					0.012722930294671642
TANEANPLK	9	Unmodified	_TANEANPLK_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2533874511719	2	479.253631	956.49271	0.47183	0.00022613	-0.43335	-0.00020769	0.038481	1.8442E-05	479.2534806257863	21.129	0.34987	21.129	20.931	21.281	0					19	8	4	0	0	0	0.078509	1	6667	6667		85.161	18.732	1	282560			41945	7194	27868	27983	42490	42490					0.012722930294671642
TANEANPLK	9	Unmodified	_TANEANPLK_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2533264160156	2	479.253631	956.49271	-0.11475	-5.4995E-05	-0.052264	-2.5048E-05	-0.16702	-8.0043E-05	479.2535541366478	20.987	0.31177	20.987	20.88	21.192	0					13	6	3	0	0	0	0.063171	1	6904	6904		90.601	28.493	1	209230			41946	7194	27868	27983	42491	42491					0.012722930294671642
TANEANPLK	9	Unmodified	_TANEANPLK_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.25341796875	2	479.253631	956.49271	-0.66072	-0.00031665	0.29893	0.00014327	-0.36179	-0.00017339	479.2536993646599	21.011	0.31361	21.011	20.844	21.158	0					13	6	3	0	0	0	0.24334	1	6805	6805		56.434	18.622	1	360130			41947	7194	27868	27983	42492	42492					0.012722930294671642
TANLQVPAKQ	10	Unmodified	_TANLQVPAKQ_					0	0	0			REV__ENST00000403263.5_1_2:206863772-206864039:-|nuORF	REV__ENST00000403263.5_1_2:206863772-206864039:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.53875732421875	3	357.204862	1068.59276	-0.89204	-0.00031864	1.0089	0.00036038	0.11684	4.1737E-05	357.2051754476237	21.516	0.44	21.516	21.316	21.756	0					18	13	2	0	0	0	0.70877	1	6255	6255		20.03	0	1	71056	+		41948	18957	27869	27984	42493	42493					0.061205303632732466
TANNRRSQ	8	Unmodified	_TANNRRSQ_					0	0	0		NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;NAV2|p.K558Sfs*35|1|0.41|ENSG00000166833|chr11:19933843-19933843|A/-|frameshift_variant	NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7453918457031	2	473.744296	945.47404	2.3829	0.0011289	0.11208	5.3097E-05	2.4949	0.001182	473.7443445417483	18.001	0.40391	18.001	17.851	18.254	0					21	8	4	0	0	0	0.35045	1	5290	5290		76.774	76.774	1	6663300			41949	5933	27870	27985	42494	42494					-0.000878238217183025
TANQIQSLL	9	Unmodified	_TANQIQSLL_					0	0	0		nc|ENSG00000103154|Q7Z6G3-2|NECAB2;ENSG00000103154|ENST00000305202|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2798767089844	2	494.277106	986.53966	-1.2589	-0.00062225	1.8294	0.00090425	0.57052	0.000282	494.27826225815335	31.341	0.3041	31.341	31.225	31.529	0					31	12	4	0	0	0	0.50858	1	10395	10395		31.53	1.2121	1	178880			41950	2217	27871	27986	42495	42495					0.045851525806369864
TANSIMASY	9	Unmodified	_TANSIMASY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.22076416015625	2	479.220943	956.427332	0.46102	0.00022093	-0.80321	-0.00038491	-0.34219	-0.00016398	479.220524934571	38.713	0.14668	38.713	38.648	38.795	0					10	6	2	0	0	0	0.15163	1	14722	14722		67.494	12.717	1	88822			41951	1443	27872	27987	42496	42496					-0.05262444487891571
TANSIMASY	9	Unmodified	_TANSIMASY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2207946777344	2	479.220943	956.427332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.705	1	38.705	38.205	39.205	0								0	0	0	0.0537	1	15197	15197		85.161	11.186	1				41952	1443	27872	27987	42497	42497					-0.05262444487891571
TANSIMASY	9	Unmodified	_TANSIMASY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.220458984375	2	479.220943	956.427332	-0.66242	-0.00031745	-0.19883	-9.5285E-05	-0.86126	-0.00041273	479.22066824147123	38.652	0.21916	38.652	38.543	38.763	0					7	4	2	0	0	0	0.085655	1	15226	15226		82.75	32.726	1	108750			41953	1443	27872	27987	42498	42498					-0.05262444487891571
TANSITVTF	9	Unmodified	_TANSITVTF_					0	0	0		ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2505187988281	2	477.250557	952.486562	0.39031	0.00018628	-0.42363	-0.00020218	-0.03332	-1.5902E-05	477.25037854315383	45.783	0.15863	45.783	45.695	45.854	0					21	9	3	0	0	0	0.055856	1	16987	16987		93.195	21.9	1	161550			41954	2000	27873	27988	42499	42499					0.008417747979592605
TANSITVTF	9	Unmodified	_TANSITVTF_					0	0	0		ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.25042724609375	2	477.250557	952.486562	-0.11772	-5.6181E-05	0.12334	5.8863E-05	0.0056197	2.682E-06	477.25057851008785	45.738	0.16306	45.738	45.698	45.861	0					11	9	2	0	0	0	0.034359	1	17665	17665		104.75	27.972	1	43923			41955	2000	27873	27988	42500	42500					0.008417747979592605
TANSITVTF	9	Unmodified	_TANSITVTF_					0	0	0		ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.25067138671875	2	477.250557	952.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.726	1	45.726	45.226	46.226	0								0	0	0	0.19847	1	17663	17663		51.193	10.415	1				41956	2000	27873	27988	42501	42501					0.008417747979592605
TANSITVTF	9	Unmodified	_TANSITVTF_					0	0	0		ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	ENST00000490741.1_1_22:39529898-39530769:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2506408691406	2	477.250557	952.486562	-0.63756	-0.00030427	1.0481	0.0005002	0.41052	0.00019592	477.251092716435	45.712	0.26309	45.712	45.576	45.839	0					16	10	2	0	0	0	0.035062	1	18287	18287		104.06	24.606	1	233030			41957	2000	27873	27988	42502	42502					0.008417747979592605
TANSTTARRLH	11	Unmodified	_TANSTTARRLH_					0	0	0		ENST00000373381.8_2_1:34066505-34068064:-|nuORF	ENST00000373381.8_2_1:34066505-34068064:-|nuORF	ENST00000373381.8_2_1:34066505-34068064:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.22509765625	3	409.889937	1226.64798	0.054184	2.2209E-05	1.7614	0.000722	1.8156	0.00074421	410.2246606726718	14.849	0.21345	14.849	14.697	14.91	0					9	4	3	0	0	0	0.64323	1	3934	3934		33.039	0.28887	1	339930			41958	8994	27874	27989	42503	42503					0.04372336883761818
TANVGYDTK	9	Unmodified	_TANVGYDTK_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1;tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1;tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1;tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1;tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7392883300781	2	484.737814	967.461075	-0.093116	-4.5137E-05	2.8016	0.001358	2.7085	0.0013129	484.73934856133536	17.659	0.37108	17.659	17.55	17.922	0					14	7	4	0	0	0	0.087861	1	5293	5293		82.241	7.9855	1	2928800			41959	23043;22689;22651	27875	27990	42504	42504					-0.023956997244681588
TAPAAAAPAAV	11	Unmodified	_TAPAAAAPAAV_					0	0	0			REV__ENST00000181839.8_1_7:39990221-39990641:+|nuORF	REV__ENST00000181839.8_1_7:39990221-39990641:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.7527770996094	2	455.753267	909.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.338	1	29.338	28.838	29.838	0								0	0	0	0.41312	1	9856	9856		34.173	0.65696	1		+		41960	17867	27876	27991	42505	42505					0.033614983804000076
TAPGIALPR	9	Unmodified	_TAPGIALPR_					0	0	0		ENST00000379672.9_2_17:12692889-12693084:+|nuORF	ENST00000379672.9_2_17:12692889-12693084:+|nuORF	ENST00000379672.9_2_17:12692889-12693084:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	448.7735900878906	2	448.271627	894.528701	-0.32815	-0.0001471	-0.012943	-5.8018E-06	-0.3411	-0.0001529	448.27160508333617	31.036	0.42088	31.036	30.724	31.145	0					15	11	2	0	0	0	0.54267	1	10595	10595		27.882	2.3082	1	73109			41961	9087	27877	27992	42506	42506					0.07721794996996323
TAPGPAILR	9	Unmodified	_TAPGPAILR_					0	0	0			REV__ENST00000578240.1_1_17:8133610-8135926:-|nuORF	REV__ENST00000578240.1_1_17:8133610-8135926:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.27166748046875	2	448.271627	894.528701	0.095125	4.2642E-05	-0.83599	-0.00037475	-0.74086	-0.00033211	448.27122383156455	31.027	0.27783	31.027	30.827	31.105	0					15	11	2	0	0	0	0.2873	1	9919	9919		51.335	0	1	55634	+		41962	16755	27878	27993	42507	42507					0.07721794996996323
TAPGPCFPK	9	Unmodified	_TAPGPCFPK_					0	0	0		ENST00000602124.1_1_19:58427786-58427942:-|nuORF	ENST00000602124.1_1_19:58427786-58427942:-|nuORF	ENST00000602124.1_1_19:58427786-58427942:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2291564941406	2	459.231113	916.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.113	1	13.113	12.613	13.613	0								0	0	0	0.28996	1	2669	2669		37.159	1.5408	1				41963	11041	27879	27994	42508	42508					-0.013892290374087679
TAPLRFFL	8	Unmodified	_TAPLRFFL_					0	0	0			REV__nc|ENSG00000122783|Q9BWK5-2|CYREN	REV__nc|ENSG00000122783|Q9BWK5-2|CYREN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.19329833984375	3	322.192006	963.554188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.023	1	48.023	47.523	48.523	0								0	0	0	1.7419	1	19113	19113		24.203	5.8783	1		+		41964	21005	27880	27995	42509	42509					0.07095269519413705
TAPPARNR	8	Unmodified	_TAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.748779296875	2	441.74885	881.483148	0.097078	4.2884E-05	-0.20944	-9.2519E-05	-0.11236	-4.9635E-05	441.74871932387543	14.918	0.65223	14.918	14.764	15.417	0					19	13	2	0	0	0	0.41952	1	3966	3966		68.485	15.133	1	335340			41965	5543	27881	27996	42510	42510					0.03766569534604969
TAPPERQPQV	10	Unmodified	_TAPPERQPQV_					0	0	0		ENSG00000113739|ENST00000265087|STC2	ENSG00000113739|ENST00000265087|STC2	ENSG00000113739|ENST00000265087|STC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.7989501953125	2	561.798737	1121.58292	1.2738	0.0007156	-0.65361	-0.0003672	0.62015	0.0003484	561.7983652945726	36.499	0.19983	36.499	36.422	36.622	0					24	10	3	0	0	0	0.55603	1	12002	12002		39.253	4.1008	1	692810			41966	2824	27882	27997	42511	42511					0.026993423579142473
TAPPVEGPF	9	Unmodified	_TAPPVEGPF_					0	0	0		ENST00000338492.8_1_10:134018945-134019089:+|nuORF	ENST00000338492.8_1_10:134018945-134019089:+|nuORF	ENST00000338492.8_1_10:134018945-134019089:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.734130859375	2	457.734543	913.454533	-0.43752	-0.00020027	-0.34705	-0.00015886	-0.78457	-0.00035913	457.73456751772136	34.247	0.21028	34.247	34.15	34.36	0					9	4	3	0	0	0	0.23186	1	13124	13124		57.811	7.7867	1	89520			41967	8715	27883	27998	42512	42512					-0.00565592885186561
TAPQAEHAM	9	Unmodified	_TAPQAEHAM_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2183837890625	2	478.218734	954.422915	0.016689	7.9811E-06	-0.84619	-0.00040466	-0.8295	-0.00039668	478.2184990467155	19.24	0.18369	19.24	19.166	19.349	0					12	5	3	0	0	0	0.40353	1	4927	4927		41.427	9.8968	1	158920			41968	563	27884	27999	42513	42513					-0.056119089107937725
TAPQAEHAM	9	Unmodified	_TAPQAEHAM_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2184753417969	2	478.218734	954.422915	0.42732	0.00020435	-0.92139	-0.00044062	-0.49407	-0.00023627	478.2184588022031	19.575	0.39352	19.575	19.402	19.795	0					21	9	4	0	0	0	0.16806	1	5918	5918		65.465	17.808	1	1407000			41969	563	27884	27999	42514	42514					-0.056119089107937725
TAPQAEHAM	9	Unmodified	_TAPQAEHAM_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.21881103515625	2	478.218734	954.422915	-1.4575	-0.00069699	0.80677	0.00038581	-0.65069	-0.00031117	478.2192183993875	19.249	0.20517	19.249	19.152	19.357	0					17	6	3	0	0	0	0.24334	1	5168	5168		56.434	22.941	1	277990			41970	563	27884	27999	42515	42515					-0.056119089107937725
TAPQAEHAM	9	Unmodified	_TAPQAEHAM_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.21844482421875	2	478.218734	954.422915	0.65203	0.00031181	-1.4632	-0.00069974	-0.8112	-0.00038793	478.2181225728957	19.47	0.3122	19.47	19.363	19.676	0					17	6	4	0	0	0	0.10506	1	6171	6171		78.264	27.071	1	2124000			41971	563	27884	27999	42516	42516					-0.056119089107937725
TAPQAEHAM	9	Unmodified	_TAPQAEHAM_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.24481201171875	2	478.218734	954.422915	-2.8977	-0.0013857	2.3449	0.0011214	-0.55279	-0.00026435	478.2199237338495	19.339	0.18143	19.339	19.221	19.403	0					10	4	3	0	0	0	0.45358	1	5208	5208		37.159	8.0096	1	178800			41972	563	27884	27999	42517	42517					-0.056119089107937725
TAPQAEHAM	9	Unmodified	_TAPQAEHAM_					0	0	0		CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.218505859375	2	478.218734	954.422915	0.86095	0.00041172	-1.2273	-0.00058693	-0.36638	-0.00017521	478.2182336823724	19.439	0.36343	19.439	19.326	19.69	0					18	7	3	0	0	0	0.095583	1	6015	6015		80.455	46.282	1	1582400			41973	563	27884	27999	42518	42518					-0.056119089107937725
TAPRRGPHG	9	Unmodified	_TAPRRGPHG_					0	0	0			REV__ENST00000540812.1_1_17:73888737-73892704:-|nuORF	REV__ENST00000540812.1_1_17:73888737-73892704:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.76129150390625	2	474.759749	947.504946	3.6269	0.0017219	-0.31508	-0.00014959	3.3118	0.0015723	474.7595017164705	24.48	0.15996	24.48	24.413	24.573	0					12	5	3	0	0	0	0.20551	1	7493	7493		60.972	60.972	1	290980	+		41974	20135	27885	28000	42519	42519					0.029093742831946656
TAPTGHTL	8	Unmodified	_TAPTGHTL_					0	0	0		ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.2110900878906	2	399.211235	796.407917	0.075627	3.0191E-05	-0.35066	-0.00013999	-0.27503	-0.00010979	399.2111093348674	20.037	0.51987	20.037	19.877	20.396	0					17	10	2	0	0	0	0.54629	1	6441	6441		55.504	14.932	1	2510100			41975	7551	27886	28001	42520	42520					0.0015696728352168066
TAPTGHTL	8	Unmodified	_TAPTGHTL_					0	0	0		ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.21112060546875	2	399.211235	796.407917	-0.61956	-0.00024733	0.57871	0.00023103	-0.040848	-1.6307E-05	399.2113700348993	20.055	0.46737	20.055	19.893	20.36	0					22	9	3	0	0	0	0.54629	1	6289	6289		55.504	14.932	1	2647100			41976	7551	27886	28001	42521	42521					0.0015696728352168066
TAPVIGYI	8	Unmodified	_TAPVIGYI_					0	0	0		nc|ENSG00000167703|Q8N370-4|SLC43A2;nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2	nc|ENSG00000167703|Q8N370-4|SLC43A2	nc|ENSG00000167703|Q8N370-4|SLC43A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.240234375	2	417.242004	832.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.482	1	19.482	18.982	19.982	0								0	0	0	1.7419	1	5299	5299		28.254	0	1				41977	6022	27887	28002	42522	42522					0.0465189898279732
TAPVTSIH	8	Unmodified	_TAPVTSIH_					0	0	0		ENSG00000120685|ENST00000352251|PROSER1;nc|ENSG00000120685|Q86XN7-2|PROSER1;PROSER1|p.S352N|1|0.39|ENSG00000120685|chr13:39014197-39014197|C/T|missense_variant	ENSG00000120685|ENST00000352251|PROSER1	ENSG00000120685|ENST00000352251|PROSER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.2264099121094	2	413.226885	824.439217	-0.91354	-0.0003775	0.81796	0.000338	-0.095582	-3.9497E-05	413.22707833153544	15.328	0.75896	15.328	15.194	15.953	0					44	27	2	0	0	0	0.75243	1	3637	3637		26.796	0	1	172880			41978	3181	27888	28003	42523	42523					0.019975403176204054
TAQGLEGLV	9	Unmodified	_TAQGLEGLV_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.75872802734375	2	444.245275	886.475997	-0.47995	-0.00021322	0.42009	0.00018662	-0.059856	-2.6591E-05	444.24552087559243	15.479	0.25072	15.479	15.414	15.664	0					10	5	3	0	0	0	0.44593	1	4141	4141		37.812	0.65241	1	231920			41979	11513	27889	28004	42524	42524					0.02821792143527091
TAQKFRALL	9	Unmodified	_TAQKFRALL_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.3192749023438	2	524.319109	1046.62366	0.55144	0.00028913	0.93129	0.00048829	1.4827	0.00077742	524.3197076390219	20.264	0.11732	20.264	20.214	20.332	0					6	4	2	0	0	0	0.21263	1	5633	5633		44.117	0	1	66035	+		41980	21018	27890	28005	42525	42525					0.10221728468172842
TAQLLALAGL	10	Unmodified	_TAQLLALAGL_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7999267578125	2	485.800217	969.585882	0.67156	0.00032624	-0.73436	-0.00035675	-0.062806	-3.0511E-05	485.80016325425606	34.736	0.97286	34.736	34.533	35.506	0					46	25	2	0	0	0	0.41335	1	13245	13245		54.776	7.119	1	643920	+		41981	12733	27891	28006	42526	42526					0.09987217482705546
TAQQPALP	8	Unmodified	_TAQQPALP_					0	0	0			REV__ENSG00000153443|ENST00000283474|UBALD1	REV__ENSG00000153443|ENST00000283474|UBALD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.2268371582031	2	413.226885	824.439217	-0.15749	-6.5078E-05	-0.094831	-3.9187E-05	-0.25232	-0.00010427	413.22683716377435	15.438	1.2334	15.438	15.086	16.32	0					109	51	3	0	0	0	0.76283	1	3564	3564		25.45	4.9683	1	747550	+		41982	15544	27892	28007	42527	42527					0.019975403176204054
TAQQPALP	8	Unmodified	_TAQQPALP_					0	0	0			REV__ENSG00000153443|ENST00000283474|UBALD1	REV__ENSG00000153443|ENST00000283474|UBALD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.22698974609375	2	413.226885	824.439217	-0.072855	-3.0106E-05	-0.26348	-0.00010888	-0.33633	-0.00013898	413.2267570198824	15.403	1.0877	15.403	15.182	16.27	0					56	37	2	0	0	0	0.79719	1	3569	3569		18.324	0.95945	1	282350	+		41983	15544	27892	28007	42528	42528					0.019975403176204054
TAQVDLQPQV	10	Unmodified	_TAQVDLQPQV_					0	0	0			REV__LIPT1|p.I369Nfs*2|1|0.26|ENSG00000144182|chr2:99163056-99163057|-/A|frameshift_variant	REV__LIPT1|p.I369Nfs*2|1|0.26|ENSG00000144182|chr2:99163056-99163057|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.8644104003906	3	366.864506	1097.57169	0.75587	0.0002773	-0.81619	-0.00029943	-0.060321	-2.213E-05	366.864201661336	17.502	0.16896	17.502	17.421	17.59	0					9	4	3	0	0	0	0.68774	1	4963	4963		22.562	5.0936	1	631540	+		41984	15223	27893	28008	42529	42529					0.02680520263766084
TAQVLAVASKG	11	Unmodified	_TAQVLAVASKG_					0	0	0		ENST00000536682.1_19:35167898-35168335:-|nuORF	ENST00000536682.1_19:35167898-35168335:-|nuORF	ENST00000536682.1_19:35167898-35168335:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.8057861328125	2	522.806031	1043.59751	-1.2978	-0.00067851	1.486	0.00077691	0.18821	9.8395E-05	522.806775876434	29.451	0.13411	29.451	29.367	29.502	0					6	3	2	0	0	0	0.59204	1	9922	9922		37.508	1.0614	1	91978			41985	10490	27894	28009	42530	42530					0.07745414506052839
TARAKKPG	8	Unmodified	_TARAKKPG_					0	0	0		ENSG00000158806|ENST00000518119|NPM2	ENSG00000158806|ENST00000518119|NPM2	ENSG00000158806|ENST00000518119|NPM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.75634765625	2	414.756144	827.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.04	1	24.04	23.54	24.54	0								0	0	0	1.7419	1	7038	7038		26.796	0	1				41986	5284	27895	28010	42531	42531					0.07708641682756934
TARAVAWAAVF	11	Unmodified	_TARAVAWAAVF_					0	0	0			REV__ENSG00000144407|ENST00000272847|PTH2R	REV__ENSG00000144407|ENST00000272847|PTH2R	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	387.8810729980469	3	388.217102	1161.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.873	1	30.873	30.373	31.373	0								0	0	0	0.41946	1	9878	9878		32.751	2.1817	1		+		41987	15232	27896	28011	42532	42532					0.055128269798160545
TARERAKH	8	Unmodified	_TARERAKH_					0	0	0		USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant;USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant	USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.77386474609375	2	484.772857	967.531161	2.4666	0.0011957	0.021333	1.0342E-05	2.4879	0.0012061	484.7727792639277	32.395	0.3702	32.395	32.287	32.657	0					14	7	2	0	0	0	0.30437	1	12220	12220		82.305	8.3303	1	1933300			41988	3376	27897	28012	42533	42533					0.046096434546598175
TAREYALK	8	Unmodified	_TAREYALK_					0	0	0		nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1;nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2662353515625	2	476.266542	950.51853	-0.62391	-0.00029715	-0.091986	-4.381E-05	-0.7159	-0.00034096	476.26666985379137	34.335	0.21268	34.335	34.196	34.409	0					9	4	3	0	0	0	0.63077	1	13145	13145		44.117	0	1	246000			41989	3835	27898	28013	42534	42534					0.041291872717465594
TARGGRRSSAV	11	Unmodified	_TARGGRRSSAV_					0	0	0		ENST00000497173.5_3_3:134515011-134670235:+|nuORF	ENST00000497173.5_3_3:134515011-134670235:+|nuORF	ENST00000497173.5_3_3:134515011-134670235:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2097473144531	3	373.21101	1116.6112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.173	1	50.173	49.673	50.673	0								0	0	0	0.42918	1	18855	18855		30.569	1.3988	1				41990	10124	27899	28014	42535	42535					0.057560850578511236
TARLDEWG	8	Unmodified	_TARLDEWG_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2323303222656	2	474.232699	946.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.021	1	16.021	15.521	16.521	0								0	0	0	1.7419	1	4258	4258		53.351	3.8154	1		+		41991	16538	27900	28015	42536	42536					-0.024522626590396612
TARMRVAP	8	Unmodified	_TARMRVAP_					0	0	0		nc|ENSG00000125755|Q92797-2|SYMPK	nc|ENSG00000125755|Q92797-2|SYMPK	nc|ENSG00000125755|Q92797-2|SYMPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.25726318359375	2	451.255454	900.496355	0.6549	0.00029553	0.82463	0.00037212	1.4795	0.00066765	451.255936602778	22.476	0.27423	22.476	22.384	22.659	0					22	6	4	0	0	0	0.64096	1	7316	7316		42.474	3.6683	1	1816700			41992	11511	27901	28016	42537	42537					0.04212684322351379
TARMRVAP	8	Unmodified	_TARMRVAP_					0	0	0		nc|ENSG00000125755|Q92797-2|SYMPK	nc|ENSG00000125755|Q92797-2|SYMPK	nc|ENSG00000125755|Q92797-2|SYMPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2574462890625	2	451.255454	900.496355	0.43771	0.00019752	2.2593	0.0010195	2.697	0.001217	451.2565348303467	22.272	0.23469	22.272	22.127	22.362	0					10	5	3	0	0	0	0.70055	1	6593	6593		33.516	6.7195	1	100670			41993	11511	27901	28016	42538	42538					0.04212684322351379
TARNIEEAK	9	Unmodified	_TARNIEEAK_					0	0	0		tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.5203857421875	3	344.520851	1030.54072	-0.7026	-0.00024206	-0.71301	-0.00024565	-1.4156	-0.00048771	344.5205694683385	18.554	0.14095	18.554	18.485	18.626	0					7	4	2	0	0	0	0.5741	1	4879	4879		19.263	0	1	333010			41994	22599	27902	28017	42539	42539					0.026673669495039576
TARQPLPI	8	Unmodified	_TARQPLPI_					0	0	0		ENST00000537670.5_1_15:66855926-66858216:-|nuORF	ENST00000537670.5_1_15:66855926-66858216:-|nuORF	ENST00000537670.5_1_15:66855926-66858216:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.271240234375	2	448.271627	894.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.051	1	31.051	30.551	31.551	0								0	0	0	1.7419	1	10255	10255		37.159	3.6661	1				41995	10508	27903	28018	42540	42540					0.07721794997007692
TARREDESY	9	Unmodified	_TARREDESY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.7603759765625	2	563.759809	1125.50507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.851	1	15.851	15.351	16.351	0								0	0	0	0.27939	1	3519	3519		39.253	10.083	1				41996	6325	27904	28019	42541	42541					-0.05266715298148483
TARREDESY	9	Unmodified	_TARREDESY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.7601928710938	2	563.759809	1125.50507	1.7802	0.0010036	-1.0008	-0.00056422	0.77941	0.0004394	563.7593207617977	16.135	0.31169	16.135	16.064	16.375	0					19	7	4	0	0	0	0.53064	1	4309	4309		29.17	3.596	1	1033700			41997	6325	27904	28019	42542	42542					-0.05266715298148483
TARREDESY	9	Unmodified	_TARREDESY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.76025390625	2	563.759809	1125.50507	1.8812	0.0010605	-1.366	-0.00077009	0.51517	0.00029043	563.7591506798975	16.078	0.36723	16.078	16.013	16.38	0					18	7	4	0	0	0	0.51991	1	4533	4533		30.318	30.318	1	882010			41998	6325	27904	28019	42543	42543					-0.05266715298148483
TARTQKTAY	9	Unmodified	_TARTQKTAY_					0	0	0		nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-3|EIF3D	nc|ENSG00000100353|O15371-3|EIF3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2823486328125	2	520.28018	1038.54581	3.3715	0.0017541	0.67695	0.0003522	4.0484	0.0021063	520.2803927111979	32.346	0.42046	32.346	32.136	32.557	0					26	8	4	0	0	0	0.2873	1	12148	12148		51.335	0	1	5292900			41999	2011	27905	28020	42544	42544					0.028076708121261618
TASATGRPVV	10	Unmodified	_TASATGRPVV_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7690124511719	2	479.769448	957.524344	2.3012	0.001104	-4.3923	-0.0021073	-2.0912	-0.0010033	479.7678311384864	29.524	0.35894	29.524	29.224	29.583	0					17	7	3	0	0	0	0.23612	1	10840	10840		75.043	5.4157	1	401100	+		42000	17280	27906	28021	42545	42545					0.04388285783431911
TASATLAHW	9	Unmodified	_TASATLAHW_					0	0	0		ENST00000590628.1_1_19:28296677-28296926:+|nuORF	ENST00000590628.1_1_19:28296677-28296926:+|nuORF	ENST00000590628.1_1_19:28296677-28296926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.24462890625	2	479.243067	956.47158	2.282	0.0010936	2.0302	0.00097296	4.3122	0.0020666	479.24410275122295	19.416	0.21551	19.416	19.26	19.476	0					8	4	3	0	0	0	0.41354	1	6009	6009		40.573	1.7665	1	852340			42001	10953	27907	28022	42546	42546					-0.008396722793918343
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.23663330078125	2	472.236927	942.459301	-0.36808	-0.00017382	-0.46405	-0.00021914	-0.83214	-0.00039297	472.2369077827949	24.576	0.18749	24.576	24.497	24.684	0					11	5	3	0	0	0	0.023074	1	7262	7262		116.9	63.967	1	337480			42002	2916	27908	28023	42547	42547					-0.01423032014065484
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2368469238281	2	472.236927	942.459301	-0.58886	-0.00027808	0.27163	0.00012827	-0.31723	-0.00014981	472.2371421131105	24.889	0.20762	24.889	24.773	24.98	0					9	5	2	0	0	0	0.0086566	1	8428	8428		143.89	92.551	1	1475900			42003	2916	27908	28023	42548	42548					-0.01423032014065484
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2365417480469	2	472.236927	942.459301	-1.4432	-0.00068152	0.20314	9.5929E-05	-1.24	-0.00058559	472.23727244971207	24.621	0.3489	24.621	24.435	24.784	0					24	12	3	0	0	0	0.021961	1	7563	7563		118.74	68.719	1	980190			42004	2916	27908	28023	42549	42549					-0.01423032014065484
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2366027832031	2	472.236927	942.459301	0.58554	0.00027651	-1.2738	-0.00060156	-0.68831	-0.00032504	472.23639700878783	24.849	0.36015	24.849	24.746	25.106	0					12	7	2	0	0	0	0.014688	1	8754	8754		131.03	81.007	1	6300800			42005	2916	27908	28023	42550	42550					-0.01423032014065484
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.23651123046875	2	472.236927	942.459301	-0.54839	-0.00025897	-0.85087	-0.00040181	-1.3993	-0.00066078	472.2367819500081	24.693	0.23299	24.693	24.594	24.827	0					12	5	3	0	0	0	0.035062	1	7729	7729		104.06	48.553	1	606970			42006	2916	27908	28023	42551	42551					-0.01423032014065484
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2366638183594	2	472.236927	942.459301	-2.4307	-0.0011479	1.237	0.00058414	-1.1938	-0.00056374	472.23782296323276	24.685	0.28055	24.685	24.579	24.86	0					15	6	4	0	0	0	0.021961	1	7740	7740		118.74	58.449	1	818720			42007	2916	27908	28023	42552	42552					-0.01423032014065484
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2366638183594	2	472.236927	942.459301	0.60859	0.0002874	-1.6355	-0.00077234	-1.0269	-0.00048495	472.236386496902	24.813	0.49879	24.813	24.611	25.11	0					16	10	3	0	0	0	0.021961	1	8617	8617		118.74	67.408	1	4711500			42008	2916	27908	28023	42553	42553					-0.01423032014065484
TASAVVQHM	9	Unmodified	_TASAVVQHM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.236572265625	2	472.236927	942.459301	2.45	0.001157	-3.5522	-0.0016775	-1.1022	-0.00052048	472.2354868129622	24.796	0.50447	24.796	24.691	25.196	0					18	10	3	0	0	0	0.016683	1	8610	8610		127.46	66.49	1	4927700			42009	2916	27908	28023	42554	42554					-0.01423032014065484
TASDFITKM	9	Unmodified	_TASDFITKM_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.252197265625	2	507.252243	1012.48993	-0.03436	-1.7429E-05	-0.3956	-0.00020067	-0.42996	-0.0002181	507.25205688104904	38.415	0.2607	38.415	38.325	38.586	0					13	8	2	0	0	0	0.04067	1	14575	14575		98.582	27.286	1	381260			42010	4813	27909	28024	42555	42555					-0.01581298419682753
TASESSYQL	9	Unmodified	_TASESSYQL_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2269287109375	2	493.227279	984.440005	-0.1257	-6.2E-05	-0.60238	-0.00029711	-0.72808	-0.00035911	493.2270336700606	33.557	0.2069	33.557	33.46	33.667	0					16	7	3	0	0	0	0.15163	1	10909	10909		67.494	14.142	1	216700			42011	4172	27910	28025	42556	42556					-0.052837098239933766
TASESSYQL	9	Unmodified	_TASESSYQL_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.22772216796875	2	493.227279	984.440005	3.4506	0.0017019	-2.1255	-0.0010484	1.3251	0.00065356	493.2261245208037	33.608	0.22474	33.608	33.515	33.74	0					12	8	2	0	0	0	0.10506	1	11299	11299		78.264	23.487	1	109860			42012	4172	27910	28025	42557	42557					-0.052837098239933766
TASESSYQL	9	Unmodified	_TASESSYQL_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2271728515625	2	493.227279	984.440005	-0.052007	-2.5651E-05	0.60413	0.00029797	0.55212	0.00027232	493.2272104055651	33.809	0.37367	33.809	33.654	34.028	0					22	9	3	0	0	0	0.04067	1	12982	12982		98.582	7.8053	1	560280			42013	4172	27910	28025	42558	42558					-0.052837098239933766
TASESSYQL	9	Unmodified	_TASESSYQL_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2279052734375	2	493.227279	984.440005	0.33347	0.00016447	0.40736	0.00020092	0.74082	0.00036539	493.2275195420554	33.611	0.19677	33.611	33.505	33.702	0					9	5	2	0	0	0	0.048471	1	11796	11796		95.815	24.519	1	91922			42014	4172	27910	28025	42559	42559					-0.052837098239933766
TASESSYQL	9	Unmodified	_TASESSYQL_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.22760009765625	2	493.227279	984.440005	0.0016472	8.1244E-07	-0.065046	-3.2082E-05	-0.063398	-3.127E-05	493.22724927134067	33.584	0.25882	33.584	33.493	33.751	0					13	7	2	0	0	0	0.13267	1	11806	11806		71.877	3.3928	1	166310			42015	4172	27910	28025	42560	42560					-0.052837098239933766
TASESSYQL	9	Unmodified	_TASESSYQL_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.22723388671875	2	493.227279	984.440005	-0.61089	-0.00030131	1.1305	0.00055759	0.51961	0.00025628	493.2276083626926	33.755	0.41849	33.755	33.65	34.069	0					20	9	3	0	0	0	0.013878	1	12867	12867		132.76	47.398	1	792310			42016	4172	27910	28025	42561	42561					-0.052837098239933766
TASESSYQL	9	Unmodified	_TASESSYQL_					0	0	0		SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2269592285156	2	493.227279	984.440005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.828	1	33.828	33.328	34.328	0								0	0	0	0.018912	1	12899	12899		101.25	32.466	1				42017	4172	27910	28025	42562	42562					-0.052837098239933766
TASFAERR	8	Unmodified	_TASFAERR_					0	0	0		ENST00000605506.1_1_1:84543221-84543581:-|nuORF	ENST00000605506.1_1_1:84543221-84543581:-|nuORF	ENST00000605506.1_1_1:84543221-84543581:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.24517822265625	2	469.246141	936.477728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.046	1	17.046	16.546	17.546	0								0	0	0	1.7419	1	4993	4993		45.952	1.8352	1				42018	11073	27911	28026	42563	42563					0.006948459521481709
TASGIHPLIV	10	Unmodified	_TASGIHPLIV_					0	0	0			REV__ENST00000497693.1_1_9:37431939-37436776:+|nuORF	REV__ENST00000497693.1_1_9:37431939-37436776:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29815673828125	2	504.297842	1006.58113	1.0284	0.00051863	-0.77264	-0.00038964	0.25577	0.00012899	504.29754021035154	43.514	0.85709	43.514	43.21	44.067	0					58	45	2	0	0	0	0.63073	1	17146	17146		30.504	3.8107	1	76344	+		42019	14903	27912	28027	42564	42564					0.07810333339944009
TASGVFSKF	9	Unmodified	_TASGVFSKF_					0	0	0		nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-3|LIG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.24774169921875	2	472.247818	942.481082	0.58729	0.00027735	-0.52423	-0.00024757	0.063062	2.9781E-05	472.24726154910627	37.946	0.24285	37.946	37.874	38.117	0					18	8	3	0	0	0	0.28897	1	14868	14868		51.193	14.034	1	200570			42020	2363	27913	28028	42565	42565					0.007540960061419355
TASGVFSKF	9	Unmodified	_TASGVFSKF_					0	0	0		nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-3|LIG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2471618652344	2	472.247818	942.481082	0.61242	0.00028922	-1.388	-0.00065548	-0.77558	-0.00036627	472.2471130066151	37.895	0.25209	37.895	37.787	38.039	0					13	5	3	0	0	0	0.063171	1	14868	14868		90.601	26.394	1	386140			42021	2363	27913	28028	42566	42566					0.007540960061419355
TASKAIIEK	9	Unmodified	_TASKAIIEK_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7896728515625	2	480.78985	959.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.391	1	17.391	16.891	17.891	0								0	0	0	0.28191	1	5156	5156		38.754	4.5811	1				42022	11444	27914	28029	42567	42567					0.0837462710304635
TASKSALKTP	10	Unmodified	_TASKSALKTP_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.1974792480469	3	335.197596	1002.57096	0.38198	0.00012804	-0.61573	-0.00020639	-0.23375	-7.8353E-05	335.1973562488886	17.559	0.1173	17.559	17.5	17.617	0					4	2	2	0	0	0	0.54861	1	5247	5247		40.058	0	1	579440	+		42023	15549	27915	28030	42568	42568					0.06977725614717656
TASNRNHN	8	Unmodified	_TASNRNHN_					0	0	0			REV__nc|ENSG00000147124|P51814-4|ZNF41	REV__nc|ENSG00000147124|P51814-4|ZNF41	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.21630859375	2	457.215372	912.416191	0.87917	0.00040197	1.2885	0.00058912	2.1677	0.00099109	457.21599700358473	17.776	0.26555	17.776	17.666	17.931	0					12	5	3	0	0	0	0.49887	1	5182	5182		60.294	60.294	1	549780	+		42024	15332	27916	28031	42569	42569					-0.04352085747143519
TASNTIACIQI	11	Unmodified	_TASNTIACIQI_					0	0	0		ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.8648681640625	3	378.865629	1133.57506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.588	1	20.588	20.088	21.088	0								0	0	0	0.43542	1	6696	6696		25.892	4.206	1				42025	10101	27917	28032	42570	42570					0.013614470461106976
TASPPPPPK	9	Unmodified	_TASPPPPPK_					0	0	0		nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.2501525878906	2	446.25036	890.486168	-0.40925	-0.00018263	-0.069253	-3.0904E-05	-0.4785	-0.00021353	446.25035465186335	18.283	0.78405	18.283	17.647	18.431	0					41	18	4	0	0	0	0.17854	1	5290	5290		64.207	3.2353	1	982270			42026	3845	27918	28033	42571	42571					0.03654399868753444
TASQDKILF	9	Unmodified	_TASQDKILF_					0	0	0		nc|ENSG00000168404|Q8NB16-2|MLKL;ENSG00000168404|ENST00000308807|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7793884277344	2	511.779482	1021.54441	1.2375	0.00063333	-1.6489	-0.00084387	-0.41139	-0.00021054	511.7785094752451	37.448	0.49876	37.448	37.226	37.725	0					28	15	3	0	0	0	0.27123	1	14642	14642		53.089	3.5529	1	422210			42027	6089	27919	28034	42572	42572					0.034500367233931684
TASQIGLVQ	9	Unmodified	_TASQIGLVQ_					0	0	0			REV__ENST00000425974.5_1_2:13107317-13107404:-|nuORF	REV__ENST00000425974.5_1_2:13107317-13107404:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7584228515625	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.975	1	27.975	27.475	28.475	0								0	0	0	0.13137	1	10079	10079		64.207	2.0999	1		+		42028	19109	27920	28035	42573	42573					0.041414810348555875
TASQLRYF	8	Unmodified	_TASQLRYF_					0	0	0		L1MC5_dup2219|chr2:240616384-240616624:-|1.426517432550395|0.100608666825259|3.83|456.0|8|1|anti-sense	L1MC5_dup2219|chr2:240616384-240616624:-|1.426517432550395|0.100608666825259|3.83|456.0|8|1|anti-sense	L1MC5_dup2219|chr2:240616384-240616624:-|1.426517432550395|0.100608666825259|3.83|456.0|8|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.2584533691406	2	493.258717	984.50288	-0.070572	-3.481E-05	-0.017454	-8.6091E-06	-0.088026	-4.342E-05	493.25861708907684	18.85	0.39105	18.85	18.611	19.002	0					16	11	2	0	0	0	0.77246	1	4740	4740		24.203	0	1	146240			42029	11279	27921	28036	42574	42574					0.010009007547068904
TASRVFVAV	9	Unmodified	_TASRVFVAV_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.27703857421875	2	475.276909	948.539266	-0.21127	-0.00010041	0.20144	9.5742E-05	-0.0098251	-4.6696E-06	475.2770052236323	20.066	0.11076	20.066	20.023	20.134	0					5	3	2	0	0	0	0.39215	1	5311	5311		42.396	1.618	1	122580			42030	3407	27922	28037	42575	42575					0.06293777651433174
TASSAPVI	8	Unmodified	_TASSAPVI_					0	0	0			REV__ENST00000488347.5_1_X:101149758-101186981:-|nuORF	REV__ENST00000488347.5_1_X:101149758-101186981:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20989990234375	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.645	1	46.645	46.145	47.145	0								0	0	0	1.7419	1	18658	18658		26.796	6.3143	1		+		42031	16120	27923	28038	42576	42576					0.019344490519983992
TASSFLLLR	9	Unmodified	_TASSFLLLR_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2986755371094	2	504.297842	1006.58113	0.6404	0.00032295	-0.078578	-3.9627E-05	0.56182	0.00028332	504.29782190172676	23.873	1.0539	23.873	23.298	24.352	0					41	35	2	0	0	0	0.47038	1	6940	6940		35.618	0.46626	1	139510	+		42032	16950	27924	28039	42577	42577					0.07810333339966746
TASSFLLLR	9	Unmodified	_TASSFLLLR_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29638671875	2	504.297842	1006.58113	1.0294	0.0005191	-3.0088	-0.0015174	-1.9795	-0.00099825	504.2962711616897	40.47	0.79633	40.47	40.317	41.113	0					53	28	2	0	0	0	0.25716	1	15944	15944		54.776	4.7518	1	121610	+		42033	16950	27924	28039	42578	42578					0.07810333339966746
TASSGHYIAY	10	Unmodified	_TASSGHYIAY_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33;USP33|p.I935Lfs*3|1|0.1|ENSG00000077254|chr1:77697343-77697343|T/-|frameshift_variant	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2512817382812	2	535.251089	1068.48762	0.58859	0.00031504	0.51195	0.00027402	1.1005	0.00058906	535.2512087331785	28.628	0.22274	28.628	28.53	28.753	0					15	10	2	0	0	0	0.58896	1	8950	8950		35.618	4.0885	1	99444			42034	1579	27925	28040	42579	42579					-0.043880108331450174
TASSGHYIAY	10	Unmodified	_TASSGHYIAY_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33;USP33|p.I935Lfs*3|1|0.1|ENSG00000077254|chr1:77697343-77697343|T/-|frameshift_variant	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2516479492188	2	535.251089	1068.48762	0.17603	9.4219E-05	0.76444	0.00040916	0.94046	0.00050338	535.2513938918406	28.882	0.41671	28.882	28.671	29.087	0					20	10	3	0	0	0	0.49411	1	10247	10247		45.972	16.823	1	676850			42035	1579	27925	28040	42580	42580					-0.043880108331450174
TASSGHYIAY	10	Unmodified	_TASSGHYIAY_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33;USP33|p.I935Lfs*3|1|0.1|ENSG00000077254|chr1:77697343-77697343|T/-|frameshift_variant	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2522583007812	2	535.251089	1068.48762	-1.36	-0.00072794	3.0087	0.0016104	1.6487	0.00088246	535.2527016447214	28.672	0.16391	28.672	28.586	28.75	0					11	4	3	0	0	0	0.52707	1	9553	9553		42.396	3.1433	1	158070			42036	1579	27925	28040	42581	42581					-0.043880108331450174
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7770690917969	2	494.776742	987.538931	0.75042	0.00037129	-0.32569	-0.00016114	0.42473	0.00021015	494.77662786093424	46.501	0.20221	46.501	46.412	46.614	0					24	12	3	0	0	0	0.043797	1	17163	17163		97.473	28.988	1	172670	+		42037	15509	27926	28041	42582	42582					0.0446635793156247
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7769775390625	2	494.776742	987.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.243	1	46.243	45.743	46.743	0								0	0	0	0.19085	1	15639	15639		52.299	0.96372	1		+		42038	15509	27926	28041	42583	42583					0.0446635793156247
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7776794433594	2	494.776742	987.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.273	1	46.273	45.773	46.773	0								0	0	0	0.082189	1	15648	15648		76.847	14.739	1		+		42039	15509	27926	28041	42584	42584					0.0446635793156247
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.777099609375	2	494.776742	987.538931	-0.64517	-0.00031922	1.6038	0.00079351	0.95859	0.00047429	494.77763303782734	46.436	0.26868	46.436	46.337	46.606	0					20	12	2	0	0	0	0.037966	1	18573	18573		101.21	21.272	1	200060	+		42040	15509	27926	28041	42585	42585					0.0446635793156247
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7762451171875	2	494.776742	987.538931	0.91656	0.00045349	-1.3297	-0.00065792	-0.41317	-0.00020443	494.77601944575827	46.446	0.36455	46.446	46.329	46.694	0					30	16	3	0	0	0	0.23186	1	18563	18563		57.811	7.7867	1	524720	+		42041	15509	27926	28041	42586	42586					0.0446635793156247
TASSSILAK	9	Unmodified	_TASSSILAK_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.2536926269531	2	439.2531	876.491647	-0.018155	-7.9748E-06	0.52155	0.00022909	0.5034	0.00022112	439.2531553558797	22.624	0.14415	22.624	22.531	22.676	0					5	3	2	0	0	0	0.30841	1	7368	7368		49.536	5.4192	1	73116			42042	4729	27927	28042	42587	42587					0.04846078660580133
TASTVKAIAI	10	Unmodified	_TASTVKAIAI_					0	0	0		ENSG00000156103|ENST00000286614|MMP16	ENSG00000156103|ENST00000286614|MMP16	ENSG00000156103|ENST00000286614|MMP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.5340270996094	3	325.534209	973.580796	0.55644	0.00018114	-1.0472	-0.0003409	-0.49077	-0.00015976	325.53382982358863	22.341	0.11524	22.341	22.285	22.4	0					4	2	2	0	0	0	0.7005	1	7564	7564		27.047	4.4677	1	159620			42043	5154	27928	28043	42588	42588					0.0929491362007866
TASVAIRLVS	10	Unmodified	_TASVAIRLVS_					0	0	0			REV__ENST00000480321.1_1_13:113699393-113699726:+|nuORF	REV__ENST00000480321.1_1_13:113699393-113699726:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.5414123535156	3	339.541475	1015.60259	0.36698	0.0001246	-0.91638	-0.00031115	-0.5494	-0.00018654	339.5412584102734	27.872	0.26483	27.872	27.764	28.029	0					11	5	3	0	0	0	0.74461	1	10138	10138		14.086	1.2743	1	228140	+		42044	19587	27929	28044	42589	42589					0.09541718368654983
TASVLIVKQ	9	Unmodified	_TASVLIVKQ_					0	0	0			REV__ENSG00000186886|ENST00000641440|OR5D3P	REV__ENSG00000186886|ENST00000641440|OR5D3P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.8000793457031	2	479.800217	957.585882	-1.4019	-0.00067262	0.85871	0.00041201	-0.54316	-0.00026061	479.8006221435334	35.214	0.30041	35.214	35.099	35.4	0					38	13	4	0	0	0	0.047412	1	11886	11886		96.19	11.275	1	1373400	+		42045	17096	27930	28045	42590	42590					0.10539217482710228
TASVLIVKQ	9	Unmodified	_TASVLIVKQ_					0	0	0			REV__ENSG00000186886|ENST00000641440|OR5D3P	REV__ENSG00000186886|ENST00000641440|OR5D3P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.79986572265625	2	479.800217	957.585882	0.92228	0.00044251	-1.2034	-0.00057739	-0.28112	-0.00013488	479.7996603137136	35.373	0.5715	35.373	35.213	35.784	0					28	11	5	0	0	0	0.030949	1	13637	13637		108.09	11.897	1	4113700	+		42046	17096	27930	28045	42591	42591					0.10539217482710228
TASYVKAKY	9	Unmodified	_TASYVKAKY_					0	0	0			REV__ANKRD13D|p.E264K|1|0.27|ENSG00000172932|chr11:67300101-67300101|G/A|missense_variant	REV__ANKRD13D|p.E264K|1|0.27|ENSG00000172932|chr11:67300101-67300101|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7832641601562	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.026	1	42.026	41.526	42.526	0								0	0	0	0.29774	1	16513	16513		35.618	2.1027	1		+		42047	12158	27931	28046	42592	42592					0.035903405860153725
TATAGMNMY	9	2 Oxidation (M)	_TATAGM(Oxidation (M))NM(Oxidation (M))Y_		TATAGM(1)NM(1)Y		TATAGM(51)NM(51)Y	0	0	2		BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant;ENST00000421745.6_1_2:32656112-32658743:+|nuORF	BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.1965637207031	2	496.19661	990.378667	0.74044	0.00036741	-1.2262	-0.00060844	-0.48576	-0.00024103	496.19620097345484	26.954	0.26064	26.954	26.811	27.072	0					11	5	3	0	0	0	0.2873	1	9732	9732		51.335	7.2187	1	421350			42048	300	27932	28047	42593	42593		14;15			-0.11690681119284818
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.2480163574219	2	464.248349	926.482145	-0.44128	-0.00020487	0.12596	5.8475E-05	-0.31533	-0.00014639	464.2484894570061	22.699	0.1034	22.699	22.65	22.754	0					6	3	2	0	0	0	0.50858	1	6458	6458		31.53	1.2121	1	116640			42049	942	27933	28048	42594	42594					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.24798583984375	2	464.248349	926.482145	-0.6948	-0.00032256	0.376	0.00017456	-0.3188	-0.000148	464.2484735394111	23.043	0.17652	23.043	22.958	23.134	0					10	4	3	0	0	0	0.032052	1	7580	7580		107.01	35.712	1	828120			42050	942	27933	28048	42595	42595					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.248046875	2	464.248349	926.482145	-0.73654	-0.00034194	0.31458	0.00014605	-0.42195	-0.00019589	464.24853028859195	22.75	0.25305	22.75	22.661	22.914	0					21	9	3	0	0	0	0.19952	1	6737	6737		61.691	13.732	1	316410			42051	942	27933	28048	42596	42596					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2480163574219	2	464.248349	926.482145	0.69207	0.00032129	-1.2701	-0.00058966	-0.57807	-0.00026837	464.24774139727026	22.952	0.26657	22.952	22.845	23.111	0					11	5	3	0	0	0	0.048471	1	7851	7851		95.815	41.039	1	2240400			42052	942	27933	28048	42597	42597					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.24798583984375	2	464.248349	926.482145	-0.43864	-0.00020364	-0.14278	-6.6283E-05	-0.58141	-0.00026992	464.2482387685512	22.829	0.2289	22.829	22.694	22.923	0					10	5	3	0	0	0	0.063171	1	6857	6857		90.601	25.135	1	191510			42053	942	27933	28048	42598	42598					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2480163574219	2	464.248349	926.482145	0.72718	0.00033759	-1.2201	-0.00056644	-0.49295	-0.00022885	464.247710374716	22.977	0.41298	22.977	22.822	23.235	0					14	8	3	0	0	0	0.014688	1	7710	7710		131.03	48.791	1	1659300			42054	942	27933	28048	42599	42599					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.24822998046875	2	464.248349	926.482145	2.6031	0.0012085	-3.7794	-0.0017546	-1.1763	-0.0005461	464.24697687617504	22.959	0.41216	22.959	22.705	23.117	0					22	8	5	0	0	0	0.032383	1	7702	7702		106.68	46.389	1	2026800			42055	942	27933	28048	42600	42600					0.015963103750550545
TATAVAHCK	9	Carbamidomethyl (C)	_TATAVAHC(Carbamidomethyl (C))K_	TATAVAHC(1)K		TATAVAHC(77)K		0	1	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.7422180175781	2	479.742376	957.4702	0.01998	9.585E-06	-0.90262	-0.00043302	-0.88264	-0.00042344	479.74192370506984	13.412	0.096167	13.412	13.376	13.472	0					8	5	2	0	0	0	0.10915	1	2625	2625		77.318	25.982	1	158400			42056	2334	27934	28049	42601	42601	94				-0.010236296397920341
TATAVAHCK	9	Carbamidomethyl (C)	_TATAVAHC(Carbamidomethyl (C))K_	TATAVAHC(1)K		TATAVAHC(140)K		0	1	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7419738769531	2	479.742376	957.4702	-0.20737	-9.9482E-05	-0.41858	-0.00020081	-0.62594	-0.00030029	479.7422845804859	13.702	0.16953	13.702	13.613	13.782	0					13	4	4	0	0	0	0.0086566	1	3163	3163		143.89	61.582	1	1357600			42057	2334	27934	28049	42602	42602	94				-0.010236296397920341
TATAVAHCK	9	Carbamidomethyl (C)	_TATAVAHC(Carbamidomethyl (C))K_	TATAVAHC(1)K		TATAVAHC(130)K		0	1	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7422790527344	2	479.742376	957.4702	-0.22245	-0.00010672	-0.45305	-0.00021735	-0.67551	-0.00032407	479.74224407866546	13.452	0.093775	13.452	13.401	13.494	0					11	5	3	0	0	0	0.012915	1	2769	2769		134.81	63.515	1	225340			42058	2334	27934	28049	42603	42603	94				-0.010236296397920341
TATAVAHCK	9	Carbamidomethyl (C)	_TATAVAHC(Carbamidomethyl (C))K_	TATAVAHC(1)K		TATAVAHC(100)K		0	1	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.74212646484375	2	479.742376	957.4702	-0.4824	-0.00023143	-0.21113	-0.00010129	-0.69353	-0.00033272	479.74231639245045	13.679	0.20427	13.679	13.574	13.778	0					7	4	2	0	0	0	0.037924	1	3393	3393		101.25	44.532	1	1853700			42059	2334	27934	28049	42604	42604	94				-0.010236296397920341
TATAVAHCK	9	Unmodified	_TATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.23138427734375	2	451.231645	900.448736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.789	1	14.789	14.289	15.289	0								0	0	0	0.035155	1	3679	3679		93.195	43.171	1				42060	2334	27934	28050	42605	42605					-0.005470146685070176
TATAVAHCK	9	Unmodified	_TATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2313537597656	2	451.231645	900.448736	-1.0936	-0.00049348	0.29946	0.00013513	-0.79417	-0.00035836	451.2318043371106	14.46	0.10812	14.46	14.402	14.51	0					11	5	3	0	0	0	0.019882	1	3136	3136		122.18	58.87	1	272170			42061	2334	27934	28050	42606	42606					-0.005470146685070176
TATAVAHCK	9	Unmodified	_TATAVAHCK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENSG00000105193|ENST00000251453|RPS16;chr19:39435705-39435848|468|276.17|0.0|24.72|-|0|RPS16,RPS16|1	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2315673828125	2	451.231645	900.448736	-0.33591	-0.00015157	-0.10717	-4.8357E-05	-0.44307	-0.00019993	451.23169439295344	14.722	0.2638	14.722	14.663	14.927	0					9	5	3	0	0	0	0.016683	1	3890	3890		127.46	42.102	1	1918800			42062	2334	27934	28050	42607	42607					-0.005470146685070176
TATDVKKLR	9	Unmodified	_TATDVKKLR_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.316162109375	2	516.314023	1030.61349	3.2813	0.0016942	0.63713	0.00032896	3.9185	0.0020232	516.3143211986754	26.578	0.32143	26.578	26.417	26.739	0					16	6	3	0	0	0	0.15558	1	9419	9419		60.118	0	1	656380	+		42063	14609	27935	28051	42608	42608					0.09941120742928433
TATEITESF	9	Unmodified	_TATEITESF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7377014160156	2	499.73748	997.460406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.34	1	41.34	40.84	41.84	0								0	0	0	0.0066162	1	16437	16437		113.41	42.116	1				42064	3575	27936	28052	42609	42609					-0.038425391641794704
TATGLGGPK	9	Unmodified	_TATGLGGPK_					0	0	0			REV__tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	REV__tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.2268371582031	2	401.226885	800.439217	0.86141	0.00034562	-1.1054	-0.00044352	-0.244	-9.7898E-05	401.2264804732541	16.146	0.56134	16.146	15.818	16.38	0					21	11	3	0	0	0	0.39215	1	4556	4556		42.396	3.59	1	295270	+		42065	21897	27937	28053	42610	42610					0.03101540317618401
TATGTVIV	8	Unmodified	_TATGTVIV_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.2237548828125	2	381.223811	760.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.162	1	28.162	27.662	28.662	0								0	0	0	1.7419	1	9922	9922		65.897	0	1				42066	1705	27938	28054	42611	42611					0.043270220860904374
TATIRGEII	9	Unmodified	_TATIRGEII_					0	0	0			REV__nc|ENSG00000096080|Q9NVS2-3|MRPS18A	REV__nc|ENSG00000096080|Q9NVS2-3|MRPS18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	325.194091796875	3	325.194075	972.560395	2.9974	0.00097473	-2.5329	-0.00082368	0.4645	0.00015105	325.19310407881926	22.113	0.31659	22.113	21.953	22.27	0					14	6	5	0	0	0	0.25109	1	7294	7294		52.937	0	1	4040700	+		42067	13477	27939	28055	42612	42612					0.07301742960294177
TATPLSHA	8	Unmodified	_TATPLSHA_					0	0	0		ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.2113952636719	2	399.211235	796.407917	0.59508	0.00023756	-0.72666	-0.00029009	-0.13158	-5.2526E-05	399.21092706151853	19.826	0.33463	19.826	19.673	20.007	0					22	10	3	0	0	0	0.65276	1	5173	5173		40.573	0	1	553810			42068	5609	27940	28056	42613	42613					0.0015696728352168066
TATSVQDVF	9	Unmodified	_TATSVQDVF_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant;ENST00000528902.1_1_17:72960370-72968856:-|nuORF	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2399597167969	2	484.24019	966.465826	0.62112	0.00030077	-0.90547	-0.00043846	-0.28435	-0.00013769	484.2397608683975	42.63	0.12435	42.63	42.575	42.7	0					10	6	2	0	0	0	0.35021	1	16134	16134		45.972	0.020292	1	57314			42069	6032	27941	28057	42614	42614					-0.018748155817092993
TATSVQDVF	9	Unmodified	_TATSVQDVF_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant;ENST00000528902.1_1_17:72960370-72968856:-|nuORF	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2399597167969	2	484.24019	966.465826	0.86408	0.00041842	-1.6288	-0.00078871	-0.76469	-0.00037029	484.23952493004214	42.573	0.19991	42.573	42.473	42.673	0					12	5	3	0	0	0	0.34452	1	16998	16998		46.457	0.50483	1	153810			42070	6032	27941	28057	42615	42615					-0.018748155817092993
TAVAEEVTSY	10	Unmodified	_TAVAEEVTSY_					0	0	0			REV__nc|ENSG00000100813|Q9UKV3-3|ACIN1	REV__nc|ENSG00000100813|Q9UKV3-3|ACIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.17364501953125	3	357.173117	1068.49752	1.3484	0.00048163	0.099468	3.5527E-05	1.4479	0.00051715	357.17316154385105	21.23	0.41326	21.23	21.126	21.539	0					16	8	3	0	0	0	0.65213	1	6888	6888		40.058	40.058	1	2689900	+		42071	13574	27942	28058	42616	42616					-0.03398867618420809
TAVCFAFAKLG	11	Unmodified	_TAVCFAFAKLG_					0	0	0			REV__ENSG00000170876|ENST00000306077|TMEM43	REV__ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.3013305664062	2	564.299527	1126.5845	1.8905	0.0010668	3.393	0.0019147	5.2835	0.0029815	564.3017142756407	40.384	0.22774	40.384	40.273	40.501	0					14	9	3	0	0	0	0.60656	1	15909	15909		36.447	2.5251	1	129510	+		42072	16382	27943	28059	42617	42617					0.02627260122289954
TAVCHTDAY	9	Carbamidomethyl (C)	_TAVC(Carbamidomethyl (C))HTDAY_	TAVC(1)HTDAY		TAVC(85)HTDAY		0	1	0		ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000507102.5_2_4:100003111-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2210693359375	2	519.221474	1036.42839	1.4267	0.00074076	-1.1967	-0.00062133	0.23001	0.00011943	519.2209233561643	21.137	0.11644	21.137	21.067	21.183	0					5	3	2	0	0	0	0.0792	1	5784	5784		84.916	47.104	1	81879			42073	7504	27944	28060	42618	42618	319				-0.08836230118981803
TAVCHTDAY	9	Carbamidomethyl (C)	_TAVC(Carbamidomethyl (C))HTDAY_	TAVC(1)HTDAY		TAVC(91)HTDAY		0	1	0		ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000507102.5_2_4:100003111-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2217407226562	2	519.221474	1036.42839	1.3819	0.00071751	-1.2352	-0.00064134	0.1467	7.6169E-05	519.2209634612826	21.479	0.18777	21.479	21.392	21.579	0					13	4	4	0	0	0	0.062676	1	6841	6841		90.777	49.998	1	813220			42074	7504	27944	28060	42619	42619	319				-0.08836230118981803
TAVCHTDAY	9	Carbamidomethyl (C)	_TAVC(Carbamidomethyl (C))HTDAY_	TAVC(1)HTDAY		TAVC(71)HTDAY		0	1	0		ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000507102.5_2_4:100003111-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2215576171875	2	519.221474	1036.42839	0.17375	9.0215E-05	0.36584	0.00018995	0.53959	0.00028017	519.2217083361292	21.193	0.16644	21.193	21.124	21.291	0					10	5	3	0	0	0	0.13519	1	6039	6039		71.296	23.638	1	184540			42075	7504	27944	28060	42620	42620	319				-0.08836230118981803
TAVCHTDAY	9	Carbamidomethyl (C)	_TAVC(Carbamidomethyl (C))HTDAY_	TAVC(1)HTDAY		TAVC(120)HTDAY		0	1	0		ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000507102.5_2_4:100003111-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2215576171875	2	519.221474	1036.42839	1.6248	0.00084363	-1.8647	-0.00096818	-0.2399	-0.00012456	519.2206791680574	21.366	0.16755	21.366	21.307	21.475	0					9	3	4	0	0	0	0.020824	1	7085	7085		120.62	61.839	1	1068300			42076	7504	27944	28060	42621	42621	319				-0.08836230118981803
TAVCHTDAY	9	Carbamidomethyl (C)	_TAVC(Carbamidomethyl (C))HTDAY_	TAVC(1)HTDAY		TAVC(110)HTDAY		0	1	0		ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000507102.5_2_4:100003111-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2217407226562	2	519.221474	1036.42839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.275	1	21.275	20.775	21.775	0								0	0	0	0.0082086	1	6138	6138		111.65	67.531	1				42077	7504	27944	28060	42622	42622	319				-0.08836230118981803
TAVDLRPSY	9	Unmodified	_TAVDLRPSY_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2707824707031	2	511.269281	1020.52401	3.0868	0.0015782	0.088743	4.5372E-05	3.1755	0.0016235	511.26923865291246	15.52	0.40953	15.52	15.471	15.88	0					17	8	3	0	0	0	0.13519	1	4121	4121		71.296	4.8664	1	5806900	+		42078	14794	27945	28061	42623	42623					0.0145686606357458
TAVDLVITEV	10	Unmodified	_TAVDLVITEV_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.8696594238281	3	353.869257	1058.58594	0.49154	0.00017394	0.62196	0.00022009	1.1135	0.00039403	353.8694919459209	22.86	0.81178	22.86	22.633	23.444	0					54	19	4	0	0	0	0.57532	1	7468	7468		49.536	0.094497	1	1043400			42079	1051	27946	28062	42624	42624					0.058991726920339715
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2503662109375	2	444.250892	886.48723	0.69588	0.00030914	-0.81079	-0.0003602	-0.11492	-5.1052E-05	444.2504771967798	24.266	0.10891	24.266	24.225	24.334	0					6	3	2	0	0	0	0.095583	1	7141	7141		80.455	10.827	1	96693			42080	1153	27947	28063	42625	42625					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2513122558594	2	444.250892	886.48723	0.21563	9.5795E-05	-1.2895	-0.00057288	-1.0739	-0.00047708	444.2503073660023	24.303	0.19246	24.303	24.215	24.407	0					12	6	3	0	0	0	0.16806	1	7139	7139		65.465	14.13	1	233800			42081	1153	27947	28063	42626	42626					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2511291503906	2	444.250892	886.48723	-0.068226	-3.0309E-05	-0.24157	-0.00010732	-0.3098	-0.00013763	444.250739823815	24.594	0.2252	24.594	24.462	24.687	0					10	5	3	0	0	0	0.085655	1	8290	8290		82.75	21.779	1	460720			42082	1153	27947	28063	42627	42627					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.2502136230469	2	444.250892	886.48723	0.58852	0.00026145	-1.3661	-0.00060687	-0.77754	-0.00034542	444.2503697266822	24.576	0.26621	24.576	24.49	24.756	0					22	6	4	0	0	0	0.070005	1	8286	8286		88.177	23.97	1	2279400			42083	1153	27947	28063	42628	42628					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.25054931640625	2	444.250892	886.48723	-0.21758	-9.6662E-05	-0.60444	-0.00026852	-0.82202	-0.00036518	444.2506386980412	24.52	0.26688	24.52	24.41	24.677	0					12	5	3	0	0	0	0.02953	1	8600	8600		109.48	13.288	1	1979300			42084	1153	27947	28063	42629	42629					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2509460449219	2	444.250892	886.48723	0.43564	0.00019353	-0.84532	-0.00037553	-0.40968	-0.000182	444.2504073375548	24.364	0.18052	24.364	24.274	24.455	0					7	4	2	0	0	0	0.10506	1	7574	7574		78.264	14.958	1	241410			42085	1153	27947	28063	42630	42630					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2500305175781	2	444.250892	886.48723	-0.4837	-0.00021488	-1.3994	-0.00062167	-1.8831	-0.00083655	444.25019341886315	24.36	0.13764	24.36	24.301	24.439	0					7	3	3	0	0	0	0.18416	1	7589	7589		63.534	19.417	1	91844			42086	1153	27947	28063	42631	42631					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2507019042969	2	444.250892	886.48723	-0.47961	-0.00021307	-0.31079	-0.00013807	-0.7904	-0.00035114	444.250751488933	24.488	0.31087	24.488	24.38	24.691	0					14	6	3	0	0	0	0.02953	1	8465	8465		109.48	29.766	1	1691500			42087	1153	27947	28063	42632	42632					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2496643066406	2	444.250892	886.48723	0.78379	0.0003482	-3.4147	-0.001517	-2.6309	-0.0011688	444.24910335201275	24.522	0.26238	24.522	24.414	24.676	0					14	5	4	0	0	0	0.24334	1	8484	8484		56.434	3.0823	1	655350			42088	1153	27947	28063	42633	42633					0.03944614237661881
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.7658386230469	2	440.766178	879.517802	-0.34825	-0.00015349	-0.14856	-6.5479E-05	-0.4968	-0.00021897	440.76609455020895	35.67	0.42214	35.67	35.558	35.98	0					32	11	4	0	0	0	0.097811	1	13368	13368		79.939	32.024	1	2840000			42089	5547	27948	28064	42634	42634					0.07322392622711504
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.7658996582031	2	440.766178	879.517802	-1.0658	-0.00046975	0.39142	0.00017252	-0.67433	-0.00029722	440.76634122057	35.403	0.33241	35.403	35.332	35.664	0					39	16	4	0	0	0	0.21116	1	11967	11967		60.294	12.378	1	491910			42090	5547	27948	28064	42635	42635					0.07322392622711504
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.7663879394531	2	440.766178	879.517802	-0.55947	-0.00024659	-0.17279	-7.6158E-05	-0.73225	-0.00032275	440.7663316300026	35.433	0.15578	35.433	35.351	35.507	0					8	5	2	0	0	0	0.49003	1	12611	12611		33.516	3.0119	1	55551			42091	5547	27948	28064	42636	42636					0.07322392622711504
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.76593017578125	2	440.766178	879.517802	0.71278	0.00031417	-1.1756	-0.00051815	-0.46279	-0.00020398	440.7655975835475	35.577	0.36621	35.577	35.466	35.833	0					13	7	2	0	0	0	0.13483	1	13757	13757		71.378	11.084	1	804320			42092	5547	27948	28064	42637	42637					0.07322392622711504
TAVGSSTRY	9	Unmodified	_TAVGSSTRY_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2385559082031	2	471.237981	940.461409	-0.0082451	-3.8854E-06	0.46113	0.0002173	0.45288	0.00021342	471.2381662904071	20.235	0.1165	20.235	20.134	20.25	0					7	4	2	0	0	0	0.24334	1	5370	5370		56.434	23.621	1	63741			42093	6406	27949	28065	42638	42638					-0.01120280004624874
TAVGSSTRY	9	Unmodified	_TAVGSSTRY_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2377624511719	2	471.237981	940.461409	0.17298	8.1515E-05	-0.71279	-0.00033589	-0.53981	-0.00025438	471.2375485303767	20.569	0.23564	20.569	20.478	20.714	0					7	5	2	0	0	0	0.13726	1	6413	6413		70.816	33.005	1	1044700			42094	6406	27949	28065	42639	42639					-0.01120280004624874
TAVGSSTRY	9	Unmodified	_TAVGSSTRY_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2380065917969	2	471.237981	940.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.291	1	20.291	19.791	20.791	0								0	0	0	0.33029	1	5639	5639		29.17	6.1333	1				42095	6406	27949	28065	42640	42640					-0.01120280004624874
TAVGSSTRY	9	Unmodified	_TAVGSSTRY_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2374572753906	2	471.237981	940.461409	-0.12424	-5.8548E-05	-0.56471	-0.00026611	-0.68895	-0.00032466	471.23764522743943	20.487	0.21498	20.487	20.38	20.595	0					9	4	3	0	0	0	0.095583	1	6637	6637		80.455	31.013	1	439380			42096	6406	27949	28065	42641	42641					-0.01120280004624874
TAVGSSTRY	9	Unmodified	_TAVGSSTRY_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2372741699219	2	471.237981	940.461409	-0.19491	-9.1847E-05	-0.86139	-0.00040592	-1.0563	-0.00049776	471.23744573321255	20.321	0.14885	20.321	20.234	20.383	0					5	3	2	0	0	0	0.46194	1	5706	5706		36.447	2.2742	1	48484			42097	6406	27949	28065	42642	42642					-0.01120280004624874
TAVGSSTRY	9	Unmodified	_TAVGSSTRY_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.238037109375	2	471.237981	940.461409	-0.58758	-0.00027689	1.1952	0.00056325	0.60767	0.00028636	471.2383952784155	20.316	0.10135	20.316	20.265	20.366	0					4	2	2	0	0	0	0.34452	1	5701	5701		46.457	2.34	1	67897			42098	6406	27949	28065	42643	42643					-0.01120280004624874
TAVGSSTRY	9	Unmodified	_TAVGSSTRY_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2379150390625	2	471.237981	940.461409	-0.55098	-0.00025964	-0.12516	-5.898E-05	-0.67614	-0.00031862	471.2379440380105	20.501	0.16612	20.501	20.394	20.56	0					7	3	3	0	0	0	0.047855	1	6510	6510		96.034	37.252	1	456370			42099	6406	27949	28065	42644	42644					-0.01120280004624874
TAVIDHHNY	9	Unmodified	_TAVIDHHNY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2568969726562	2	535.256705	1068.49886	0.58552	0.0003134	-0.025504	-1.3651E-05	0.56001	0.00029975	535.2567671664552	20.987	0.19171	20.987	20.907	21.098	0					10	5	2	0	0	0	0.012936	1	5696	5696		118.74	76.347	1	1393800			42100	7963	27950	28066	42645	42645					-0.032651887390102274
TAVIDHHNY	9	Unmodified	_TAVIDHHNY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	357.1734313964844	3	357.173562	1068.49886	-0.89221	-0.00031867	0.58508	0.00020898	-0.30713	-0.0001097	357.1737423130643	21.006	0.17524	21.006	20.927	21.102	0					11	5	3	0	0	0	0.048471	1	5966	5966		95.815	53.419	1	1352300			42101	7963	27950	28066	42646	42646					-0.032651887390102274
TAVIDHHNY	9	Unmodified	_TAVIDHHNY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2568969726562	2	535.256705	1068.49886	-0.59863	-0.00032042	1.2976	0.00069456	0.699	0.00037414	535.2573322324318	21.006	0.24122	21.006	20.927	21.168	0					18	7	4	0	0	0	0.0067848	1	5967	5967		134.81	85.369	1	1203900			42102	7963	27950	28066	42647	42647					-0.032651887390102274
TAVIDHHNY	9	Unmodified	_TAVIDHHNY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2567749023438	2	535.256705	1068.49886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.008	1	21.008	20.508	21.508	0								0	0	0	0.14211	1	5962	5962		45.972	25.025	1				42103	7963	27950	28066	42648	42648					-0.032651887390102274
TAVIDHHNY	9	Unmodified	_TAVIDHHNY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2568969726562	2	535.256705	1068.49886	0.29119	0.00015586	0.12128	6.4916E-05	0.41248	0.00022078	535.2566819368109	21.199	0.2135	21.199	21.144	21.357	0					7	4	3	0	0	0	0.014413	1	7006	7006		115.49	88.801	1	401270			42104	7963	27950	28066	42649	42649					-0.032651887390102274
TAVIDHHNY	9	Unmodified	_TAVIDHHNY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.17352294921875	3	357.173562	1068.49886	-0.088793	-3.1715E-05	-0.18116	-6.4705E-05	-0.26995	-9.6419E-05	357.17351130357133	21.076	0.1889	21.076	20.979	21.168	0					8	4	3	0	0	0	0.41113	1	6070	6070		40.778	11.608	1	172230			42105	7963	27950	28066	42650	42650					-0.032651887390102274
TAVKASKQI	9	Unmodified	_TAVKASKQI_					0	0	0			REV__RSRP1|p.A265V|1|0.27|ENSG00000117616|chr1:25242668-25242668|G/A|missense_variant	REV__RSRP1|p.A265V|1|0.27|ENSG00000117616|chr1:25242668-25242668|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.28997802734375	2	473.290017	944.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.873	1	16.873	16.373	17.373	0								0	0	0	0.27939	1	4762	4762		39.253	10.103	1		+		42106	21478	27951	28067	42651	42651					0.09098046822896322
TAVKHEQEY	9	Unmodified	_TAVKHEQEY_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7708129882812	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.316	1	16.316	15.816	16.816	0								0	0	0	0.097963	1	3888	3888		65.465	24.687	1				42107	1750	27952	28068	42652	42652					-0.022883392873836783
TAVKHEQEY	9	Unmodified	_TAVKHEQEY_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.77001953125	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.551	1	16.551	16.051	17.051	0								0	0	0	0.012693	1	4751	4751		90.37	29.398	1				42108	1750	27952	28068	42653	42653					-0.022883392873836783
TAVKHEQEY	9	Unmodified	_TAVKHEQEY_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.7706909179688	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.397	1	16.397	15.897	16.897	0								0	0	0	0.084509	1	3879	3879		60.118	23.672	1				42109	1750	27952	28068	42654	42654					-0.022883392873836783
TAVKHEQEY	9	Unmodified	_TAVKHEQEY_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.769775390625	2	552.769645	1103.52474	-1.2518	-0.00069195	1.0683	0.00059052	-0.1835	-0.00010143	552.7703946554915	16.375	0.11821	16.375	16.285	16.403	0					5	3	2	0	0	0	0.11411	1	3874	3874		60.118	17.722	1	72909			42110	1750	27952	28068	42655	42655					-0.022883392873836783
TAVPTLLKY	9	Unmodified	_TAVPTLLKY_					0	0	0		ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.3033752441406	2	503.302593	1004.59063	1.1791	0.00059346	-3.8141	-0.0019197	-2.635	-0.0013262	503.8012563194563	41.415	0.46144	41.415	41.227	41.689	0					21	11	3	0	0	0	0.22837	1	16438	16438		58.23	19.424	1	117650			42111	3587	27953	28069	42656	42656					0.08852101625473097
TAVPTLLKY	9	Unmodified	_TAVPTLLKY_					0	0	0		ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.30242919921875	2	503.302593	1004.59063	2.9286	0.001474	-3.7675	-0.0018962	-0.83888	-0.00042221	503.3010028141209	41.372	0.46247	41.372	41.214	41.677	0					19	11	3	0	0	0	0.25716	1	16455	16455		54.776	8.8244	1	191330			42112	3587	27953	28069	42657	42657					0.08852101625473097
TAVQPALAP	9	Unmodified	_TAVQPALAP_					0	0	0			REV__nc|ENSG00000186583|Q76KD6-2|SPATC1	REV__nc|ENSG00000186583|Q76KD6-2|SPATC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.2500305175781	2	434.25036	866.486168	-0.26628	-0.00011563	-0.65822	-0.00028583	-0.92449	-0.00040146	434.2500608155677	32.008	0.25993	32.008	31.839	32.098	0					16	10	2	0	0	0	0.35045	1	10292	10292		45.952	5.3793	1	60968	+		42113	17083	27954	28070	42658	42658					0.047583998687514395
TAVRVYRR	8	Unmodified	_TAVRVYRR_					0	0	0			REV__KLHL17|p.T471S|1|0.27|ENSG00000187961|chr1:963976-963976|C/G|missense_variant	REV__KLHL17|p.T471S|1|0.27|ENSG00000187961|chr1:963976-963976|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.808349609375	2	510.8067	1019.59885	3.0705	0.0015684	-0.60609	-0.00030959	2.4644	0.0012588	510.806576161883	32.699	0.45652	32.699	32.59	33.046	0					19	9	4	0	0	0	0.73426	1	12365	12365		29.15	29.15	1	713450	+		42114	17148	27955	28071	42659	42659					0.08983093385472785
TAVTGTEKI	9	Unmodified	_TAVTGTEKI_					0	0	0			REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	307.17510986328125	3	307.17468	918.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.522	1	45.522	45.022	46.022	0								0	0	0	0.35507	1	18235	18235		18.262	0	1		+		42115	17451	27956	28072	42660	42660					0.03970061315010298
TAVTGVTP	8	Unmodified	_TAVTGVTP_					0	0	0			REV__ENSG00000135482|ENST00000257940|ZC3H10	REV__ENSG00000135482|ENST00000257940|ZC3H10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098388671875	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.067	1	45.067	44.567	45.567	0								0	0	0	1.7419	1	18053	18053		33.516	3.674	1		+		42116	14804	27957	28073	42661	42661					0.019344490519983992
TAVTVNQSL	9	Unmodified	_TAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7558288574219	2	466.756007	931.497461	0.054751	2.5555E-05	-0.77662	-0.00036249	-0.72187	-0.00033694	466.75565578404263	33.407	0.33139	33.407	33.294	33.625	0					25	11	3	0	0	0	0.0023831	1	10840	10840		172.25	35.98	1	1619800		+	42117	11643	27958	28074	42662	42662					0.028971771722467565
TAVTVNQSL	9	Unmodified	_TAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.75592041015625	2	466.756007	931.497461	-0.663	-0.00030946	0.52034	0.00024287	-0.14266	-6.6589E-05	466.75604507805565	33.654	0.12932	33.654	33.568	33.698	0					8	3	3	0	0	0	0.015496	1	12457	12457		129.42	26.648	1	348170		+	42118	11643	27958	28074	42663	42663					0.028971771722467565
TAVTVNQSL	9	Unmodified	_TAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7556457519531	2	466.756007	931.497461	-0.96315	-0.00044956	0.55485	0.00025898	-0.40831	-0.00019058	466.7561927059767	33.437	0.47288	33.437	33.313	33.785	0					44	18	5	0	0	0	3.5882E-08	1	11203	11203		214.23	70.344	1	3688400		+	42119	11643	27958	28074	42664	42664					0.028971771722467565
TAVTVNQSL	9	Unmodified	_TAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7555236816406	2	466.756007	931.497461	-0.18688	-8.7225E-05	-0.49327	-0.00023024	-0.68015	-0.00031746	466.7557744125456	33.434	0.18392	33.434	33.337	33.521	0					12	5	3	0	0	0	0.0076184	1	11709	11709		146.79	50.97	1	379840		+	42120	11643	27958	28074	42665	42665					0.028971771722467565
TAVTVNQSL	9	Unmodified	_TAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7557678222656	2	466.756007	931.497461	-0.66808	-0.00031183	0.041432	1.9339E-05	-0.62665	-0.00029249	466.7559919057985	33.455	0.39254	33.455	33.33	33.722	0					31	11	4	0	0	0	5.293E-08	1	11704	11704		209.84	65.953	1	2759900		+	42121	11643	27958	28074	42666	42666					0.028971771722467565
TAVTVNQSL	9	Unmodified	_TAVTVNQSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.755615234375	2	466.756007	931.497461	-0.50259	-0.00023459	-0.080799	-3.7713E-05	-0.58339	-0.0002723	466.7559482176979	33.608	0.37567	33.608	33.449	33.825	0					23	8	4	0	0	0	0.0023831	1	12777	12777		172.25	56.755	1	7029000		+	42122	11643	27958	28074	42667	42667					0.028971771722467565
TAVVNGEFK	9	Unmodified	_TAVVNGEFK_					0	0	0		nc|ENSG00000165672|P30048-2|PRDX3;ENSG00000165672|ENST00000298510|PRDX3	nc|ENSG00000165672|P30048-2|PRDX3	nc|ENSG00000165672|P30048-2|PRDX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7592468261719	2	482.758549	963.502546	3.4771	0.0016786	0.023974	1.1574E-05	3.501	0.0016902	482.75855037984104	16.198	0.11882	16.198	16.137	16.256	0					10	4	3	0	0	0	0.39215	1	3835	3835		42.396	1.8235	1	151290			42123	5818	27959	28075	42668	42668					0.019334810348709652
TAWCLLGLK	9	Unmodified	_TAWCLLGLK_					0	0	0		ENST00000378460.6_1_11:47800565-47800655:-|nuORF	ENST00000378460.6_1_11:47800565-47800655:-|nuORF	ENST00000378460.6_1_11:47800565-47800655:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7845764160156	2	502.783513	1003.55247	1.1609	0.00058368	1.0804	0.00054323	2.2413	0.0011269	502.7840284753871	26.093	0.26669	26.093	25.983	26.25	0					12	5	3	0	0	0	0.063823	1	9164	9164		73.975	73.975	1	2312800			42124	9069	27960	28076	42669	42669					0.05083892439165538
TAWDRIVLF	9	Unmodified	_TAWDRIVLF_					0	0	0			REV__ENST00000216484.6_1_14:77974806-77974902:-|nuORF	REV__ENST00000216484.6_1_14:77974806-77974902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	374.2124938964844	3	374.209836	1119.60768	0.79356	0.00029696	1.7774	0.00066512	2.571	0.00096208	374.2107860042041	33.323	0.47775	33.323	33.176	33.654	0					22	11	3	0	0	0	0.43426	1	12731	12731		37.812	0	1	209470	+		42125	17882	27961	28077	42670	42670					0.05266022231262468
TAWHRRASP	9	Unmodified	_TAWHRRASP_					0	0	0		ENST00000461838.5_1_13:28014569-28024229:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.19268798828125	3	361.19318	1080.55771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.962	1	16.962	16.462	17.462	0								0	0	0	0.29356	1	4160	4160		36.447	3.6962	1				42126	9736	27962	28078	42671	42671					0.02065332345978277
TAYLHQHQK	9	Unmodified	_TAYLHQHQK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant;ZNF256|p.E544Dfs*7|1|0.08|ENSG00000152454|chr19:57941176-57941177|-/ATGAGTG|frameshift_variant;ZNF256|p.Y603*|1|0.08|ENSG00000152454|chr19:57940999-57941000|AT/-|frameshift_variant;ENSG00000152454|ENST00000282308|ZNF256;ENST00000598928.1_1_19:58452294-58458975:-|nuORF	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.2937622070312	2	563.293622	1124.57269	1.2572	0.0007082	-0.83647	-0.00047118	0.42077	0.00023702	563.2932608828975	14.801	0.11002	14.801	14.752	14.862	0					8	5	2	0	0	0	0.16806	1	3104	3104		65.465	21.349	1	100510			42127	6429	27963	28079	42672	42672					0.01538779423322012
TAYLHQHQK	9	Unmodified	_TAYLHQHQK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant;ZNF256|p.E544Dfs*7|1|0.08|ENSG00000152454|chr19:57941176-57941177|-/ATGAGTG|frameshift_variant;ZNF256|p.Y603*|1|0.08|ENSG00000152454|chr19:57940999-57941000|AT/-|frameshift_variant;ENSG00000152454|ENST00000282308|ZNF256;ENST00000598928.1_1_19:58452294-58458975:-|nuORF	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.2943725585938	2	563.293622	1124.57269	-0.38628	-0.00021759	0.012237	6.8928E-06	-0.37405	-0.0002107	563.2935872701019	14.852	0.066327	14.852	14.789	14.855	0					4	2	2	0	0	0	0.36892	1	3277	3277		44.377	5.1244	1	101560			42128	6429	27963	28079	42673	42673					0.01538779423322012
TAYLHQHQK	9	Unmodified	_TAYLHQHQK_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant;ZNF256|p.E544Dfs*7|1|0.08|ENSG00000152454|chr19:57941176-57941177|-/ATGAGTG|frameshift_variant;ZNF256|p.Y603*|1|0.08|ENSG00000152454|chr19:57940999-57941000|AT/-|frameshift_variant;ENSG00000152454|ENST00000282308|ZNF256;ENST00000598928.1_1_19:58452294-58458975:-|nuORF	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.2938232421875	2	563.293622	1124.57269	0.087013	4.9014E-05	0.58028	0.00032687	0.66729	0.00037588	563.293864422496	15.07	0.21973	15.07	14.96	15.18	0					7	4	2	0	0	0	0.21263	1	4057	4057		60.118	19.34	1	632910			42129	6429	27963	28079	42674	42674					0.01538779423322012
TAYWMPAEK	9	Unmodified	_TAYWMPAEK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1;PLBD1|p.Y42H|1|0.35|ENSG00000121316|chr12:14553404-14553404|A/G|missense_variant;PLBD1|p.N214Tfs*4|1|0.06|ENSG00000121316|chr12:14536628-14536628|T/-|frameshift_variant	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.760498046875	2	548.760235	1095.50592	1.8442	0.001012	-0.1135	-6.2287E-05	1.7307	0.00094974	548.7596613147965	35.867	0.24014	35.867	35.79	36.03	0					12	6	3	0	0	0	0.40353	1	13481	13481		41.427	8.6142	1	105800			42130	3220	27964	28080	42675	42675					-0.038015921827991406
TAYWMPAEK	9	Unmodified	_TAYWMPAEK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1;PLBD1|p.Y42H|1|0.35|ENSG00000121316|chr12:14553404-14553404|A/G|missense_variant;PLBD1|p.N214Tfs*4|1|0.06|ENSG00000121316|chr12:14536628-14536628|T/-|frameshift_variant	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7615356445312	2	548.760235	1095.50592	0.38779	0.0002128	0.5947	0.00032635	0.98248	0.00053915	548.76064780464	35.642	0.22151	35.642	35.557	35.779	0					15	11	2	0	0	0	0.3269	1	12052	12052		47.96	17.456	1	98838			42131	3220	27964	28080	42676	42676					-0.038015921827991406
TAYWMPAEK	9	Unmodified	_TAYWMPAEK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1;PLBD1|p.Y42H|1|0.35|ENSG00000121316|chr12:14553404-14553404|A/G|missense_variant;PLBD1|p.N214Tfs*4|1|0.06|ENSG00000121316|chr12:14536628-14536628|T/-|frameshift_variant	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7606201171875	2	548.760235	1095.50592	1.7659	0.00096906	-0.70982	-0.00038952	1.0561	0.00057954	548.7595681953093	35.856	0.54092	35.856	35.637	36.178	0					25	16	2	0	0	0	0.12834	1	13920	13920		72.879	21.544	1	472590			42132	3220	27964	28080	42677	42677					-0.038015921827991406
TAYWMPAEK	9	Unmodified	_TAYWMPAEK_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1;PLBD1|p.Y42H|1|0.35|ENSG00000121316|chr12:14553404-14553404|A/G|missense_variant;PLBD1|p.N214Tfs*4|1|0.06|ENSG00000121316|chr12:14536628-14536628|T/-|frameshift_variant	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7612915039062	2	548.760235	1095.50592	1.8502	0.0010153	-1.4547	-0.0007983	0.39545	0.00021701	548.7595288692726	35.776	0.51269	35.776	35.62	36.132	0					17	10	3	0	0	0	0.25761	1	13853	13853		54.722	6.8067	1	460870			42133	3220	27964	28080	42678	42678					-0.038015921827991406
TCASCVHSI	9	Unmodified	_TCASCVHSI_					0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7013244628906	2	460.701863	919.389172	-0.15214	-7.009E-05	0.099561	4.5868E-05	-0.052576	-2.4222E-05	460.7018997761419	13.033	0.099378	13.033	12.942	13.041	0					4	2	2	0	0	0	0.2873	1	3069	3069		51.335	0	1	49282			42134	3307	27965	28081	42679	42679					-0.07374653674185083
TCDYVASVV	9	Unmodified	_TCDYVASVV_					0	0	0			REV__AGPAT4|p.R303Gfs*7|1|0.33|ENSG00000026652|chr6:161139557-161139557|G/-|frameshift_variant	REV__AGPAT4|p.R303Gfs*7|1|0.33|ENSG00000026652|chr6:161139557-161139557|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.723388671875	2	478.723318	955.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.443	1	34.443	33.943	34.943	0								0	0	0	0.27166	1	11617	11617		40.573	0	1		+		42135	12111	27966	28082	42680	42680					-0.04741560345121343
TCGTLEKEYE	10	Unmodified	_TCGTLEKEYE_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;ZGRF1|p.I715Yfs*5|1|0.35|ENSG00000138658|chr4:112617899-112617900|-/A|frameshift_variant;ZGRF1|p.L728Yfs*14|1|0.17|ENSG00000138658|chr4:112617859-112617859|A/-|frameshift_variant;ZGRF1|p.H772Afs*13|1|0.34|ENSG00000138658|chr4:112617729-112617730|-/T|frameshift_variant;ZGRF1|p.K771Sfs*52|1|0.1|ENSG00000138658|chr4:112617730-112617730|T/-|frameshift_variant;nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1;ZGRF1|p.L528Wfs*3|1|0.31|ENSG00000138658|chr4:112618459-112618459|A/-|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.7589721679688	2	586.760629	1171.5067	-0.21351	-0.00012528	-3.095	-0.001816	-3.3085	-0.0019413	586.7590252544917	10.983	0.094315	10.983	10.944	11.039	0					7	4	2	0	0	0	0.76713	1	2152	2152		9.7057	1.012	1	115860			42136	4277	27967	28083	42681	42681					-0.07218842324391517
TCHAANLAGQ	10	Unmodified	_TCHAANLAGQ_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2298583984375	2	493.229633	984.444714	0.77629	0.00038289	-0.93368	-0.00046052	-0.15739	-7.7631E-05	493.2293571424296	18.686	0.21564	18.686	18.6	18.816	0					14	5	3	0	0	0	0.58189	1	5522	5522		36.447	0.82846	1	521420			42137	2751	27968	28084	42682	42682					-0.048131041622241355
TCKQKMIQEL	10	Carbamidomethyl (C),Oxidation (M)	_TC(Carbamidomethyl (C))KQKM(Oxidation (M))IQEL_	TC(1)KQKMIQEL	TCKQKM(1)IQEL	TC(130)KQKMIQEL	TCKQKM(130)IQEL	0	1	1			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	647.829833984375	2	647.828323	1293.64209	2.8649	0.0018559	-0.45362	-0.00029386	2.4113	0.0015621	647.8278990145752	28.335	0.96132	28.335	28.228	29.19	0					52	19	6	0	0	0	0.01215	1	10238	10238		134.77	16.955	1	12708000	+		42138	21034	27969	28085	42683	42683	725	757			0.007017342656126857
TCLLVGPLNN	10	Unmodified	_TCLLVGPLNN_					0	0	0			REV__PCDHAC2|p.Y622Lfs*8|1|0.23|ENSG00000243232|chr5:140968624-140968625|-/T|frameshift_variant	REV__PCDHAC2|p.Y622Lfs*8|1|0.23|ENSG00000243232|chr5:140968624-140968625|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2809448242188	2	522.281334	1042.54812	0.082648	4.3165E-05	-1.1546	-0.00060301	-1.0719	-0.00055984	522.2814878824125	37.379	0.20898	37.379	37.316	37.525	0					8	6	2	0	0	0	0.61187	1	14193	14193		32.812	4.9302	1	56739	+		42139	17699	27970	28086	42684	42684					0.02854383225599122
TCLMIEIL	8	Carbamidomethyl (C)	_TC(Carbamidomethyl (C))LMIEIL_	TC(1)LMIEIL		TC(42)LMIEIL		0	1	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7608642578125	2	496.761389	991.508225	-0.059181	-2.9399E-05	0.09918	4.9269E-05	0.039999	1.987E-05	496.7614545841282	29.216	0.6019	29.216	29.018	29.62	0					44	21	3	0	0	0	0.64096	1	9139	9139		42.474	6.8562	1	367990	+		42140	13620	27971	28087	42685	42685	519				0.012131202306591149
TCLPEYEM	8	Unmodified	_TCLPEYEM_					0	0	0		tr|U7SU07|U7SU07_FUSNUSulfitereductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01055PE=3SV=1	tr|U7SU07|U7SU07_FUSNUSulfitereductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01055PE=3SV=1	tr|U7SU07|U7SU07_FUSNUSulfitereductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01055PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2043762207031	2	493.203904	984.393255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.034	1	37.034	36.534	37.534	0								0	0	0	1.7419	1	14010	14010		25.45	6.0902	1				42141	22802	27972	28088	42686	42686					-0.09956608971140213
TCMFLGEE	8	Unmodified	_TCMFLGEE_					0	0	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.1919250488281	2	465.190796	928.36704	-1.1308	-0.00052603	1.8822	0.0008756	0.75145	0.00034957	465.1925445566806	11.46	0.14585	11.46	11.36	11.506	0					9	4	3	0	0	0	0.78999	1	2359	2359		13.775	3.5906	1	154620			42142	11836	27973	28089	42687	42687					-0.10000878142614056
TCSEPVVA	8	Unmodified	_TCSEPVVA_					0	0	0		TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant;TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant;ENSG00000169962|ENST00000339381|TAS1R3	TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.1933898925781	2	403.191654	804.368755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.078	1	14.078	13.578	14.578	0								0	0	0	1.7419	1	3422	3422		28.254	1.4582	1				42143	6199	27974	28090	42688	42688					-0.04125501062355852
TCTAAHPEL	9	Unmodified	_TCTAAHPEL_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.72064208984375	2	471.72111	941.427666	0.19394	9.1488E-05	-1.1334	-0.00053465	-0.93946	-0.00044316	471.7206692986348	25.921	1.8916	25.921	25.664	27.556	0					82	43	4	0	0	0	0.14603	1	8850	8850		68.787	20.871	1	2479600			42144	11747	27975	28091	42689	42689					-0.04539024768030231
TCTAAHPEL	9	Unmodified	_TCTAAHPEL_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7206726074219	2	471.72111	941.427666	-0.12367	-5.8336E-05	-0.7573	-0.00035724	-0.88097	-0.00041557	471.72089355416375	25.893	1.1921	25.893	25.603	26.795	0					51	22	5	0	0	0	0.030949	1	9193	9193		108.09	52.583	1	1503400			42145	11747	27975	28091	42690	42690					-0.04539024768030231
TCTAAHPEL	9	Unmodified	_TCTAAHPEL_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.72119140625	2	471.72111	941.427666	-0.17865	-8.4273E-05	-0.7458	-0.00035181	-0.92445	-0.00043608	471.7209038267206	25.743	0.75181	25.743	25.524	26.276	0					30	16	4	0	0	0	0.047412	1	8181	8181		96.19	50.238	1	225740			42146	11747	27975	28091	42691	42691					-0.04539024768030231
TCTAAHPEL	9	Unmodified	_TCTAAHPEL_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7217102050781	2	471.72111	941.427666	-0.56654	-0.00026725	0.047291	2.2308E-05	-0.51925	-0.00024494	471.7212141009158	25.698	0.61889	25.698	25.514	26.133	0					23	13	3	0	0	0	0.099922	1	8177	8177		79.451	31.535	1	360170			42147	11747	27975	28091	42692	42692					-0.04539024768030231
TCTAAHPEL	9	Unmodified	_TCTAAHPEL_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7205810546875	2	471.72111	941.427666	-0.55953	-0.00026394	-0.33839	-0.00015962	-0.89792	-0.00042357	471.72102470771785	25.857	1.454	25.857	25.565	27.019	0					67	27	4	0	0	0	0.1115	2	9031	9031;9172		76.774	34.3	1	2292400			42148	11747	27975	28091	42693;42694	42693					-0.04539024768030231
TCTAAHPEL	9	Unmodified	_TCTAAHPEL_					0	0	0		nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877|IGHA2	nc|ENSG00000211890|P01877|IGHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7208557128906	2	471.72111	941.427666	0.59086	0.00027872	-1.3535	-0.00063845	-0.76259	-0.00035973	471.7205349662038	25.841	1.2572	25.841	25.548	26.805	0					54	23	4	0	0	0	0.025517	1	9067	9067		113.41	63.97	1	1724600			42149	11747	27975	28091	42695	42695					-0.04539024768030231
TCVWGSSRC	9	Unmodified	_TCVWGSSRC_					0	0	0		ENST00000253506.9_1_18:77288339-77288585:+|nuORF	ENST00000253506.9_1_18:77288339-77288585:+|nuORF	ENST00000253506.9_1_18:77288339-77288585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7120666503906	2	499.712762	997.410971	0.16181	8.0857E-05	-1.3912	-0.00069522	-1.2294	-0.00061437	499.7121175966437	21.096	0.28215	21.096	20.979	21.261	0					14	6	3	0	0	0	0.37197	1	6055	6055		44.117	5.3107	1	223290			42150	8251	27976	28092	42696	42696					-0.08783848925611437
TDAGHSQL	8	Unmodified	_TDAGHSQL_					0	0	0			REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.69537353515625	2	414.695949	827.377345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.086	1	18.086	17.586	18.586	0								0	0	0	1.7419	1	4448	4448		35.618	5.1146	1		+		42151	16074	27977	28093	42697	42697					-0.04324811101537307
TDAGHSQL	8	Unmodified	_TDAGHSQL_					0	0	0			REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.69573974609375	2	414.695949	827.377345	-0.06639	-2.7532E-05	-0.43711	-0.00018127	-0.5035	-0.0002088	414.69591172697994	18.157	0.19547	18.157	18.05	18.246	0					6	4	2	0	0	0	0.51384	1	4695	4695		58.782	2.0609	1	73317	+		42152	16074	27977	28093	42698	42698					-0.04324811101537307
TDAGSGAHL	9	Unmodified	_TDAGSGAHL_					0	0	0			REV__VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant	REV__VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.6958312988281	2	414.695949	827.377345	-1.4673	-0.00060849	0.8593	0.00035635	-0.60802	-0.00025214	414.69621849790127	18.079	0.10638	18.079	18.026	18.133	0					6	3	2	0	0	0	0.32741	1	4668	4668		47.916	1.9636	1	121220	+		42153	13645	27978	28094	42699	42699					-0.04324811101537307
TDAHVAEEG	9	Unmodified	_TDAHVAEEG_					0	0	0		ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;nc|ENSG00000197653|Q8IVF4|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	ENSG00000197653|ENST00000673944|DNAH10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.702880859375	2	464.703971	927.393389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.248	1	21.248	20.748	21.748	0								0	0	0	0.28996	1	6069	6069		37.159	0.13063	1				42154	7485	27979	28095	42700	42700					-0.07321149655274439
TDAIFVQR	8	Unmodified	_TDAIFVQR_					0	0	0		nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.25823974609375	2	475.258717	948.50288	-0.42656	-0.00020272	-1.5182	-0.00072153	-1.9447	-0.00092426	475.2583631514809	23.347	0.41183	23.347	23.203	23.614	0					11	9	2	0	0	0	0.59411	1	7121	7121		50.025	7.5501	1	145660			42155	2438	27980	28096	42701	42701					0.02656900754709568
TDALELALR	9	Unmodified	_TDALELALR_					0	0	0			REV__ENSG00000083535|ENST00000326291|PIBF1	REV__ENSG00000083535|ENST00000326291|PIBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.28472900390625	2	501.284931	1000.55531	1.1168	0.00055983	-0.48011	-0.00024067	0.63669	0.00031916	501.28465016857155	25.204	0.42112	25.204	25.093	25.514	0					15	8	2	0	0	0	0.11898	1	8805	8805		75.043	3.6654	1	2415100	+		42156	13334	27981	28097	42702	42702					0.05505439097657927
TDAQGHSL	8	Unmodified	_TDAQGHSL_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2;SLC28A2|p.D48Mfs*52|1|0.38|ENSG00000137860|chr15:45253488-45253488|G/-|frameshift_variant	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.6956481933594	2	414.695949	827.377345	-2.3258	-0.00096452	1.8606	0.00077158	-0.46524	-0.00019293	414.6967513899437	18.144	0.18143	18.144	18.084	18.266	0					5	4	2	0	0	0	0.64144	1	4709	4709		42.396	3.59	1	103920			42157	4203	27982	28098	42703	42703					-0.043248111015145696
TDASTDVIIF	10	Unmodified	_TDASTDVIIF_					0	0	0			REV__tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1	REV__tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2747192382812	2	541.274229	1080.53391	2.0094	0.0010876	0.9232	0.0004997	2.9326	0.0015873	541.2740252562355	40.064	0.27364	40.064	39.929	40.203	0					13	9	2	0	0	0	0.20011	1	15754	15754		79.451	8.1553	1	102310	+		42158	21921	27983	28099	42704	42704					-0.0031399072172462184
TDAVVKHVL	9	Unmodified	_TDAVVKHVL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2901916503906	2	491.290017	980.565481	-1.2605	-0.00061926	1.166	0.00057284	-0.094488	-4.6421E-05	491.29073485562617	25.698	0.18192	25.698	25.589	25.771	0					12	5	3	0	0	0	0.2873	1	8049	8049		51.335	8.9393	1	244270			42159	3256	27984	28100	42705	42705					0.07442046822893644
TDAVVKHVL	9	Unmodified	_TDAVVKHVL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.28985595703125	2	491.290017	980.565481	0.58495	0.00028738	-0.88114	-0.00043289	-0.29618	-0.00014551	491.28958536537334	25.926	0.39624	25.926	25.738	26.134	0					14	6	4	0	0	0	0.0792	1	9230	9230		84.916	29.411	1	1869100			42160	3256	27984	28100	42706	42706					0.07442046822893644
TDAVVKHVL	9	Unmodified	_TDAVVKHVL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.28997802734375	2	491.290017	980.565481	0.80472	0.00039535	-1.1784	-0.00057895	-0.3737	-0.00018359	491.289562328267	25.89	0.35001	25.89	25.701	26.051	0					10	5	3	0	0	0	0.063823	1	9092	9092		90.37	18.492	1	913350			42161	3256	27984	28100	42707	42707					0.07442046822893644
TDDLKVAN	8	Unmodified	_TDDLKVAN_					0	0	0			REV__DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	REV__DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.22723388671875	2	438.227082	874.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.698	1	22.698	22.198	23.198	0								0	0	0	1.7419	1	7720	7720		42.474	4.6629	1		+		42162	12732	27985	28101	42708	42708					-0.0026308475320320213
TDDSTLVRI	9	Unmodified	_TDDSTLVRI_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.27178955078125	2	510.272021	1018.52949	-0.11665	-5.9522E-05	-1.7814	-0.000909	-1.898	-0.00096852	510.2719684662309	14.65	0.063373	14.65	14.621	14.685	0					6	2	3	0	0	0	0.099922	1	3053	3053		79.451	4.4077	1	145100			42163	4242	27986	28102	42709	42709					0.020965448553852184
TDECYDCMFD	10	Unmodified	_TDECYDCMFD_					0	0	0			REV__ZNF423|p.Q394Rfs*36|1|0.13|ENSG00000102935|chr16:49637973-49637973|C/-|frameshift_variant	REV__ZNF423|p.Q394Rfs*36|1|0.13|ENSG00000102935|chr16:49637973-49637973|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	621.3416748046875	2	621.193407	1240.37226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.11	1	18.11	17.61	18.61	0								0	0	0	0.4201	1	5501	5501		15.642	1.5047	1		+		42164	13657	27987	28103	42710	42710					-0.23830987132987502
TDEEKHVSM	9	Unmodified	_TDEEKHVSM_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.16290283203125	3	359.162335	1074.46517	0.12358	4.4386E-05	1.0772	0.00038689	1.2008	0.00043127	359.1627418115918	15.686	0.11697	15.686	15.642	15.759	0					7	5	2	0	0	0	0.57706	1	3452	3452		31.53	10.498	1	78705	+		42165	13884	27988	28104	42711	42711					-0.06907978293065753
TDEHLQAL	8	Unmodified	_TDEHLQAL_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7322082519531	2	463.732532	925.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.835	1	26.835	26.335	27.335	0								0	0	0	1.7419	1	8698	8698		79.939	3.0926	1				42166	6720	27989	28105	42712	42712					-0.015196823789210612
TDFKDKIV	8	Unmodified	_TDFKDKIV_					0	0	0		CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1;nc|ENSG00000142453|Q86X55-2|CARM1	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2741394042969	2	483.26875	964.522947	-0.27172	-0.00013132	-0.11056	-5.343E-05	-0.38228	-0.00018475	483.2686398877371	40.318	0.68689	40.318	40.079	40.766	0					104	37	5	0	0	0	0.70598	1	14275	14275		30.504	18.993	1	4702500			42167	374	27990	28106	42713	42713					0.03926651694666816
TDFKQYQVL	9	Unmodified	_TDFKQYQVL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	571.2991333007812	2	571.298039	1140.58152	3.4002	0.0019425	-0.88062	-0.0005031	2.5196	0.0014395	571.2979477548345	40.049	0.27627	40.049	39.9	40.176	0					22	6	5	0	0	0	0.28897	1	15880	15880		51.193	1.7511	1	392320			42168	6476	27991	28107	42714	42714					0.01685708269155839
TDFLGPTDVVL	11	Unmodified	_TDFLGPTDVVL_					0	0	0			REV__GIMAP7|p.I261*|1|0.41|ENSG00000179144|chr7:150520750-150520750|A/-|frameshift_variant	REV__GIMAP7|p.I261*|1|0.41|ENSG00000179144|chr7:150520750-150520750|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.8068237304688	2	588.810979	1175.6074	0.1656	9.751E-05	-4.2502	-0.0025026	-4.0846	-0.0024051	588.8065536821398	33.026	0.36628	33.026	32.854	33.22	0					21	10	3	0	0	0	0.45317	1	12165	12165		47.657	1.2006	1	255630	+		42169	16764	27992	28108	42715	42715					0.02662557720782388
TDFLTQAETI	10	Unmodified	_TDFLTQAETI_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7852172851562	2	569.784961	1137.55537	0.060319	3.4369E-05	0.35038	0.00019964	0.4107	0.00023401	569.7850932313953	39.207	0.18826	39.207	39.125	39.313	0					13	6	3	0	0	0	0.35046	1	14912	14912		61.691	0	1	145370	+		42170	12726	27993	28109	42716	42716					-0.00790605692986901
TDFQTHTSL	9	Unmodified	_TDFQTHTSL_					0	0	0		STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant;STK11IP|p.E522Rfs*80|1|0.11|ENSG00000144589|chr2:219608354-219608354|G/-|frameshift_variant;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2499389648438	2	525.248546	1048.48254	0.67489	0.00035448	-0.011191	-5.878E-06	0.6637	0.00034861	525.2487739430617	29.985	0.10172	29.985	29.922	30.024	0					6	4	2	0	0	0	0.12834	1	9519	9519		72.879	16.158	1	51735			42171	4626	27994	28110	42717	42717					-0.03976314695751171
TDFQTHTSL	9	Unmodified	_TDFQTHTSL_					0	0	0		STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant;STK11IP|p.E522Rfs*80|1|0.11|ENSG00000144589|chr2:219608354-219608354|G/-|frameshift_variant;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2491455078125	2	525.248546	1048.48254	0.095775	5.0306E-05	0.43086	0.00022631	0.52664	0.00027661	525.2488486990796	30.242	0.24954	30.242	30.156	30.405	0					10	6	2	0	0	0	0.0049871	1	10890	10890		158.07	72.914	1	435490			42172	4626	27994	28110	42718	42718					-0.03976314695751171
TDFQTHTSL	9	Unmodified	_TDFQTHTSL_					0	0	0		STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant;STK11IP|p.E522Rfs*80|1|0.11|ENSG00000144589|chr2:219608354-219608354|G/-|frameshift_variant;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2491455078125	2	525.248546	1048.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.025	1	30.025	29.525	30.525	0								0	0	0	0.19847	1	9826	9826		51.193	10.415	1				42173	4626	27994	28110	42719	42719					-0.03976314695751171
TDFQTHTSL	9	Unmodified	_TDFQTHTSL_					0	0	0		STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant;STK11IP|p.E522Rfs*80|1|0.11|ENSG00000144589|chr2:219608354-219608354|G/-|frameshift_variant;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2490844726562	2	525.248546	1048.48254	0.15105	7.934E-05	1.1937	0.000627	1.3448	0.00070634	525.249124133219	30.257	0.1872	30.257	30.163	30.35	0					10	4	3	0	0	0	0.037712	1	11299	11299		101.46	35.657	1	326960			42174	4626	27994	28110	42720	42720					-0.03976314695751171
TDGDKLIK	8	Unmodified	_TDGDKLIK_					0	0	0			REV__ENST00000472638.1_1_1:156020124-156021603:-|nuORF	REV__ENST00000472638.1_1_1:156020124-156021603:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.2529602050781	2	445.2531	888.491647	0.80047	0.00035641	-1.2366	-0.00055062	-0.43617	-0.0001942	445.25256992098736	27.362	0.32283	27.362	27.187	27.51	0					14	6	3	0	0	0	0.39125	1	9817	9817		71.877	13.096	1	585400	+		42175	15765	27995	28111	42721	42721					0.0429407866058682
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.24017333984375	2	471.239993	940.465432	-0.0089386	-4.2122E-06	0.56926	0.00026826	0.56033	0.00026405	471.24029444242365	39.59	0.31954	39.59	39.439	39.759	0					31	18	2	0	0	0	0.32408	1	12819	12819		79.939	27.64	1	227160			42176	2846	27996	28112	42722	42722					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.24029541015625	2	471.239993	940.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.642	1	39.642	39.142	40.142	0								0	0	0	1.7419	1	13320	13320		66.429	14.13	1				42177	2846	27996	28112	42723	42723					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2394714355469	2	471.239993	940.465432	-1.3632	-0.00064241	1.0344	0.00048746	-0.32881	-0.00015495	471.2405023411882	39.636	0.24174	39.636	39.56	39.802	0					31	13	3	0	0	0	0.41701	1	13306	13306		68.787	10.976	1	222120			42178	2846	27996	28112	42724	42724					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.23974609375	2	471.239993	940.465432	-0.12422	-5.8538E-05	0.25217	0.00011883	0.12795	6.0296E-05	471.2400705694432	39.848	0.38952	39.848	39.741	40.13	0					25	13	3	0	0	0	0.24328	1	15677	15677		113.41	50.105	1	280600			42179	2846	27996	28112	42725	42725					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2396240234375	2	471.239993	940.465432	0.59523	0.0002805	-1.043	-0.00049149	-0.44775	-0.000211	471.23953574365964	39.859	0.38589	39.859	39.732	40.118	0					35	13	3	0	0	0	0.24622	1	15670	15670		108.09	41.658	1	1256800			42180	2846	27996	28112	42726	42726					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.74188232421875	2	471.239993	940.465432	-0.19376	-9.1309E-05	0.48087	0.00022661	0.28711	0.0001353	471.24022417472304	39.66	0.26085	39.66	39.535	39.796	0					23	13	2	0	0	0	0.61938	1	14103	14103		45.952	12.436	1	128800			42181	2846	27996	28112	42727	42727					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.23944091796875	2	471.239993	940.465432	-0.58423	-0.00027531	0.32874	0.00015492	-0.25549	-0.0001204	471.2401198007982	39.663	0.33577	39.663	39.529	39.864	0					37	17	3	0	0	0	0.59773	1	14101	14101		49.442	12.282	1	222230			42182	2846	27996	28112	42728	42728					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.2395935058594	2	471.239993	940.465432	-0.55229	-0.00026026	0.073341	3.4561E-05	-0.47895	-0.0002257	471.2399308408336	39.805	0.54479	39.805	39.701	40.245	0					28	12	4	0	0	0	0.11778	1	15746	15746		157.33	63.323	1	1295500			42183	2846	27996	28112	42729	42729					-0.007181905109064246
TDHRKPLI	8	Unmodified	_TDHRKPLI_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.Q1921K|1|0.49|ENSG00000133401|chr5:32089209-32089209|C/A|missense_variant	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.1943359375	3	327.194298	978.561064	-0.025545	-8.3581E-06	-0.63434	-0.00020755	-0.65989	-0.00021591	327.1941862462721	22.119	0.31212	22.119	22.033	22.345	0					13	7	3	0	0	0	0.79719	1	6524	6524		14.865	0	1	250240			42184	3854	27997	28113	42730	42730					0.07092582400002811
TDIKAFNLK	9	Unmodified	_TDIKAFNLK_					0	0	0		tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.3037109375	2	525.303124	1048.5917	0.43966	0.00023095	0.18911	9.9342E-05	0.62877	0.0003303	525.3031512333315	28.259	0.096601	28.259	28.222	28.319	0					5	3	2	0	0	0	0.39215	1	9096	9096		42.396	20.694	1	49415			42185	22829	27998	28114	42731	42731					0.06934315994340068
TDILVSKI	8	Unmodified	_TDILVSKI_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7733154296875	2	444.773668	887.532783	0.5521	0.00024556	-0.95789	-0.00042604	-0.40578	-0.00018048	444.7732045870391	38.196	0.29572	38.196	38.07	38.366	0					21	10	3	0	0	0	0.5535	1	14969	14969		54.776	0	1	263890			42186	5261	27999	28115	42732	42732					0.08451839700046548
TDILVSKI	8	Unmodified	_TDILVSKI_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.77337646484375	2	444.773668	887.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.955	1	37.955	37.455	38.455	0								0	0	0	1.7419	1	13585	13585		71.877	5.4482	1				42187	5261	27999	28115	42733	42733					0.08451839700046548
TDISARIL	8	Unmodified	_TDISARIL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.76080322265625	2	444.761092	887.507631	0.55191	0.00024547	-0.12011	-5.3422E-05	0.4318	0.00019205	444.76103917985483	36.818	0.26443	36.818	36.705	36.97	0					14	8	2	0	0	0	0.43813	1	14366	14366		66.429	0	1	104410			42188	6043	28000	28116	42734	42734					0.059377848974691005
TDISARIL	8	Unmodified	_TDISARIL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.7613830566406	2	444.761092	887.507631	0.79011	0.00035141	1.0649	0.00047365	1.8551	0.00082506	444.7616277939495	36.769	0.41043	36.769	36.613	37.023	0					12	8	2	0	0	0	0.53424	1	14332	14332		56.721	0	1	192410			42189	6043	28000	28116	42735	42735					0.059377848974691005
TDISINVI	8	Unmodified	_TDISINVI_					0	0	0		OR2S2|p.A191T|1|0.1|ENSG00000278889|chr9:35957528-35957528|C/T|missense_variant	OR2S2|p.A191T|1|0.1|ENSG00000278889|chr9:35957528-35957528|C/T|missense_variant	OR2S2|p.A191T|1|0.1|ENSG00000278889|chr9:35957528-35957528|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7476806640625	2	437.74765	873.480748	0.29856	0.00013069	-0.525	-0.00022982	-0.22644	-9.9123E-05	437.7474892573871	28.815	0.26729	28.815	28.685	28.953	0					14	6	3	0	0	0	0.24622	1	9605	9605		108.09	0	1	544020			42190	11876	28001	28117	42736	42736					0.03894676286279264
TDKITVIL	8	Unmodified	_TDKITVIL_					0	0	0			REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	REV__DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.78070068359375	2	451.781493	901.548434	-2.6116	-0.0011799	1.4378	0.00064957	-1.1738	-0.00053032	451.7823502831037	40.776	0.098724	40.776	40.714	40.813	0					7	5	2	0	0	0	0.67394	1	14462	14462		37.159	2.9866	1	36606	+		42191	12745	28002	28118	42737	42737					0.09372126217101595
TDKRFQPV	8	Unmodified	_TDKRFQPV_					0	0	0		ENST00000485996.1_1_14:21944657-21945031:-|nuORF;ENST00000481569.1_1_8:61429766-61471511:+|nuORF;ENST00000475857.1_1_14:21942908-21945031:-|nuORF;ENST00000429861.5_1_8:61471430-61504606:+|nuORF;ENSG00000104388|ENST00000262646|RAB2A;ENSG00000129472|ENST00000397762|RAB2B	ENST00000485996.1_1_14:21944657-21945031:-|nuORF	ENST00000485996.1_1_14:21944657-21945031:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.85040283203125	3	330.85042	989.529429	0.52451	0.00017354	-0.76617	-0.00025349	-0.24166	-7.9952E-05	330.85018605347574	16.977	0.2938	16.977	16.809	17.102	0					13	7	3	0	0	0	0.75243	1	4697	4697		29.15	4.6304	1	651540			42192	2283	28003	28119	42738	42738					0.03424589646044751
TDKSFVEK	8	Unmodified	_TDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.25030517578125	2	477.250557	952.486562	0.64124	0.00030603	-1.0337	-0.00049331	-0.39241	-0.00018728	477.2500328349591	18.198	0.27194	18.198	18.139	18.411	0					12	5	3	0	0	0	0.00017646	1	5558	5558		209.19	46.942	1	2169500			42193	2007;2348;3852	28004	28120	42739	42739					0.008417747979592605
TDKSFVEK	8	Unmodified	_TDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2504577636719	2	477.250557	952.486562	-0.34313	-0.00016376	0.25778	0.00012303	-0.085347	-4.0732E-05	477.2504803080689	18.015	0.11214	18.015	17.955	18.067	0					6	2	3	0	0	0	0.25094	1	4624	4624		138.06	22.568	1	179390			42194	2007;2348;3852	28004	28120	42740	42740					0.008417747979592605
TDKSFVEK	8	Unmodified	_TDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2501525878906	2	477.250557	952.486562	0.82141	0.00039202	-1.3477	-0.0006432	-0.5263	-0.00025118	477.24980218678	18.215	0.31271	18.215	18.109	18.421	0					13	6	3	0	0	0	0.23138	1	5420	5420		132.76	25.75	1	2475500			42195	2007;2348;3852	28004	28120	42741	42741					0.008417747979592605
TDKTIDVII	9	Unmodified	_TDKTIDVII_					0	0	0			REV__nc|ENSG00000177628|P04062-4|GBA1	REV__nc|ENSG00000177628|P04062-4|GBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2947082519531	2	509.294965	1016.57538	1.3462	0.0006856	-2.2149	-0.0011281	-0.86876	-0.00044245	509.2938692043853	38.258	0.25524	38.258	38.111	38.366	0					18	5	4	0	0	0	0.17854	1	15040	15040		64.207	4.089	1	524360	+		42196	16702	28005	28121	42742	42742					0.06775190037626544
TDLASRAFL	9	Unmodified	_TDLASRAFL_					0	0	0			REV__ENSG00000196937|ENST00000359943|FAM3C	REV__ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2729187011719	2	497.271824	992.529095	-2.3017	-0.0011446	2.5678	0.0012769	0.26613	0.00013234	497.2732862639644	40.192	0.2052	40.192	40.09	40.295	0					18	10	2	0	0	0	0.17854	1	14272	14272		64.207	9.431	1	80288	+		42197	17293	28006	28122	42743	42743					0.03253169926199462
TDLLTKQL	8	Unmodified	_TDLLTKQL_					0	0	0			REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2765197753906	2	466.276575	930.538597	0.43776	0.00020412	-1.08	-0.00050357	-0.64223	-0.00029946	466.2762886549109	29.093	0.44688	29.093	28.888	29.334	0					26	11	3	0	0	0	0.34592	1	10344	10344		77.318	0	1	1057300	+		42198	12512	28007	28123	42744	42744					0.07054938211717854
TDLLTKQL	8	Unmodified	_TDLLTKQL_					0	0	0			REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	REV__CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2763977050781	2	466.276575	930.538597	0.65293	0.00030444	-0.60843	-0.0002837	0.044493	2.0746E-05	466.276401192685	29	0.51482	29	28.792	29.307	0					22	10	4	0	0	0	0.2678	1	10586	10586		93.195	0	1	1332300	+		42199	12512	28007	28123	42745	42745					0.07054938211717854
TDLQKVSDL	9	Unmodified	_TDLQKVSDL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2;ENST00000577417.5_1_17:26966838-26970337:-|nuORF;ENST00000580882.5_1_17:26966325-26972074:-|nuORF	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.1856384277344	3	340.185356	1017.53424	0.52866	0.00017984	0.52254	0.00017776	1.0512	0.0003576	340.1854576956279	22.836	0.36727	22.836	22.677	23.044	0					12	7	2	0	0	0	0.37197	1	7800	7800		60.118	10.582	1	248380			42200	998	28008	28124	42746	42746					0.026174289981327092
TDLSRIAI	8	Unmodified	_TDLSRIAI_					0	0	0			REV__PLXND1|p.N675Tfs*5|2|0.17|ENSG00000004399|chr3:129584392-129584392|G/-|frameshift_variant	REV__PLXND1|p.N675Tfs*5|2|0.17|ENSG00000004399|chr3:129584392-129584392|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.76080322265625	2	444.761092	887.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.611	1	36.611	36.111	37.111	0								0	0	0	1.7419	1	13104	13104		37.159	2.9866	1		+		42201	12823	28009	28125	42747	42747					0.059377848974691005
TDLVRGTL	8	Unmodified	_TDLVRGTL_					0	0	0		ENST00000478085.5_1_22:40803992-40804918:+|nuORF;ENST00000470518.5_1_22:40803281-40805023:+|nuORF;ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3	ENST00000478085.5_1_22:40803992-40804918:+|nuORF	ENST00000478085.5_1_22:40803992-40804918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7530212402344	2	437.753267	873.491981	0.61433	0.00026893	-1.0937	-0.00047879	-0.4794	-0.00020986	437.75279745377355	14.458	0.13244	14.458	14.417	14.55	0					5	3	2	0	0	0	0.25485	1	3535	3535		97.473	7.1029	1	260260			42202	2013	28010	28126	42748	42748					0.050174983804254225
TDLVRGTL	8	Unmodified	_TDLVRGTL_					0	0	0		ENST00000478085.5_1_22:40803992-40804918:+|nuORF;ENST00000470518.5_1_22:40803281-40805023:+|nuORF;ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3	ENST00000478085.5_1_22:40803992-40804918:+|nuORF	ENST00000478085.5_1_22:40803992-40804918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7530212402344	2	437.753267	873.491981	-0.56714	-0.00024827	0.074257	3.2506E-05	-0.49289	-0.00021576	437.7533554154669	14.367	0.11572	14.367	14.308	14.423	0					4	2	2	0	0	0	0.27512	1	3569	3569		90.777	5.8611	1	224180			42203	2013	28010	28126	42749	42749					0.050174983804254225
TDLYTHQV	8	Unmodified	_TDLYTHQV_					0	0	0		nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.740478515625	2	488.740357	975.46616	0.61526	0.0003007	-0.41197	-0.00020135	0.20328	9.9353E-05	488.74014711695787	28.62	0.26252	28.62	28.515	28.778	0					12	5	3	0	0	0	0.63077	1	10520	10520		44.117	1.7207	1	1742600			42204	11833	28011	28127	42750	42750					-0.022553958618459546
TDMRCRTTF	9	Carbamidomethyl (C)	_TDMRC(Carbamidomethyl (C))RTTF_	TDMRC(1)RTTF		TDMRC(66)RTTF		0	1	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.2701416015625	2	594.268432	1186.52231	3.1721	0.0018851	-0.5018	-0.0002982	2.6703	0.0015869	594.2682449344285	31.943	0.41798	31.943	31.835	32.253	0					22	8	4	0	0	0	0.16002	1	12006	12006		66.429	15.237	1	1279400			42205	3629	28012	28128	42751	42751	153				-0.06348834288360194
TDPASSWALVI	11	Unmodified	_TDPASSWALVI_					0	0	0		ENST00000525266.5_1_8:146062833-146071517:+|nuORF	ENST00000525266.5_1_8:146062833-146071517:+|nuORF	ENST00000525266.5_1_8:146062833-146071517:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.3050537109375	2	580.303321	1158.59209	-0.036225	-2.1022E-05	3.1239	0.0018128	3.0877	0.0017918	580.3055219006027	42.235	0.12595	42.235	42.157	42.283	0					9	6	2	0	0	0	0.56817	1	16009	16009		39.253	3.6345	1	64357			42206	10359	28013	28129	42752	42752					0.01913690923561262
TDPQLDAGAE	10	Unmodified	_TDPQLDAGAE_					0	0	0			REV__LPIN3|p.G368Afs*52|1|0.31|ENSG00000132793|chr20:41350389-41350389|G/-|frameshift_variant	REV__LPIN3|p.G368Afs*52|1|0.31|ENSG00000132793|chr20:41350389-41350389|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7297058105469	2	508.730186	1015.44582	-1.8804	-0.00095661	2.036	0.0010358	0.15566	7.9187E-05	508.731021337496	29.916	0.17775	29.916	29.794	29.971	0					8	5	2	0	0	0	0.34667	1	10102	10102		62.107	6.6032	1	182660	+		42207	14677	28014	28130	42753	42753					-0.06128611312328758
TDQLRLLAK	9	Unmodified	_TDQLRLLAK_					0	0	0			REV__nc|ENSG00000122884|P13674-3|P4HA1	REV__nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3226928710938	2	529.321848	1056.62914	1.1778	0.00062343	0.07496	3.9678E-05	1.2527	0.0006631	529.3222145963031	27.838	0.1333	27.838	27.782	27.915	0					6	4	2	0	0	0	0.42902	1	8646	8646		39.253	0	1	47549	+		42208	14346	28015	28131	42754	42754					0.10309407260001535
TDQVSLLR	8	Unmodified	_TDQVSLLR_					0	0	0		ENSG00000175745|ENST00000327111|NR2F1	ENSG00000175745|ENST00000327111|NR2F1	ENSG00000175745|ENST00000327111|NR2F1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.26361083984375	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.68	1	14.68	14.18	15.18	0								0	0	0	1.7419	1	3063	3063		60.972	8.0352	1				42209	6573	28016	28132	42755	42755					0.04540883409151775
TDRIPTVSV	9	Unmodified	_TDRIPTVSV_					0	0	0			REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF	REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2772521972656	2	494.277106	986.53966	-0.44946	-0.00022216	-1.1749	-0.00058074	-1.6244	-0.0008029	494.27727848584135	37.364	0.43028	37.364	37.095	37.525	0					26	12	3	0	0	0	0.47473	1	14131	14131		35.152	3.1972	1	109660	+		42210	15513	28017	28133	42756	42756					0.04585152580614249
TDRPSLLSP	9	Unmodified	_TDRPSLLSP_					0	0	0			REV__ENST00000381867.5_2_20:1276831-1277038:+|nuORF	REV__ENST00000381867.5_2_20:1276831-1277038:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.1833190917969	3	329.181946	984.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.314	1	46.314	45.814	46.814	0								0	0	0	0.3245	1	18535	18535		30.318	4.8675	1		+		42211	18789	28018	28134	42757	42757					0.031128660635772576
TDRSPSHPAK	10	Unmodified	_TDRSPSHPAK_					0	0	0			REV__nc|ENSG00000269955|Q9Y383-2|LUC7L2	REV__nc|ENSG00000269955|Q9Y383-2|LUC7L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.781982421875	2	548.280712	1094.54687	0.40526	0.00022219	-1.7377	-0.00095276	-1.3325	-0.00073057	548.2791930799207	25.359	0.095289	25.359	25.312	25.407	0					5	3	2	0	0	0	0.54861	1	7897	7897		40.058	6.1365	1	47747	+		42212	21249	28019	28135	42758	42758					0.003378851810339256
TDRVMTVSF	9	Unmodified	_TDRVMTVSF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2640380859375	2	528.263142	1054.51173	-1.1835	-0.00062518	2.6219	0.0013851	1.4384	0.00075987	528.264960729224	39.792	0.19239	39.792	39.722	39.914	0					13	10	2	0	0	0	0.40353	1	14170	14170		41.427	0.64845	1	67250			42213	2984;7383;10335	28020	28136	42759	42759					-0.013344936711064292
TDSIVKNIS	9	Unmodified	_TDSIVKNIS_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;BMPR2|p.N583Kfs*6|1|0.17|ENSG00000204217|chr2:202555406-202555407|-/A|frameshift_variant;BMPR2|p.N583Tfs*44|12|0.43|ENSG00000204217|chr2:202555407-202555407|A/-|frameshift_variant;BMPR2|p.E672Kfs*28|1|0.3|ENSG00000204217|chr2:202555675-202555675|A/-|frameshift_variant	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7703552246094	2	488.769114	975.523675	-1.2504	-0.00061116	1.229	0.00060068	-0.021436	-1.0477E-05	488.7696799001892	28.494	0.19596	28.494	28.43	28.626	0					15	7	3	0	0	0	0.19605	1	9191	9191		62.107	0	1	206240			42214	7681	28021	28137	42760	42760					0.034934463437252816
TDSPQAAVL	9	Unmodified	_TDSPQAAVL_					0	0	0			REV__ENSG00000164270|ENST00000377888|HTR4	REV__ENSG00000164270|ENST00000377888|HTR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2345886230469	2	451.234907	900.455261	0.70034	0.00031602	-1.219	-0.00055008	-0.5187	-0.00023406	451.23437871730215	38.663	0.45228	38.663	38.445	38.897	0					22	16	2	0	0	0	0.24095	1	15170	15170		56.721	1.8265	1	86259	+		42215	15976	28022	28138	42761	42761					0.001052017638471625
TDSQLVCLL	9	Unmodified	_TDSQLVCLL_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.26043701171875	2	496.260068	990.505582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.529	1	25.529	25.029	26.029	0								0	0	0	0.29774	1	8131	8131		35.618	0	1		+		42216	18877	28023	28139	42762	42762					0.009949880973749714
TDSSPGAL	8	Unmodified	_TDSSPGAL_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.1794738769531	2	374.179601	746.344648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.099	1	30.099	29.599	30.599	0								0	0	0	1.7419	1	10818	10818		19.36	1.995	1		+		42217	21136	28024	28140	42763	42763					-0.038670182243663476
TDSTIEVDSV	10	Unmodified	_TDSTIEVDSV_					0	0	0		nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000494543.1_1_1:235344410-235345179:-|nuORF	nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2509765625	2	533.250951	1064.48735	0.13849	7.3852E-05	-3.2067	-0.00171	-3.0682	-0.0016361	533.2493273921766	26.536	0.27528	26.536	26.44	26.715	0					14	6	3	0	0	0	0.39566	1	9171	9171		56.721	7.2795	1	646710			42218	1268	28025	28141	42764	42764					-0.042314753436585306
TDSTVNTRL	9	Unmodified	_TDSTVNTRL_					0	0	0		ENST00000467592.5_1_7:23381795-23387427:-|nuORF	ENST00000467592.5_1_7:23381795-23387427:-|nuORF	ENST00000467592.5_1_7:23381795-23387427:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7640686035156	2	503.76182	1005.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.116	1	45.116	44.616	45.616	0								0	0	0	0.22075	1	18073	18073		40.778	0	1				42219	9800	28026	28142	42765	42765					0.006553741955599435
TDVKFRTF	8	Unmodified	_TDVKFRTF_					0	0	0		tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1	tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1	tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2742004394531	2	507.274367	1012.53418	-0.034116	-1.7306E-05	-0.0012339	-6.2593E-07	-0.03535	-1.7932E-05	507.274433710768	44.935	0.18692	44.935	44.852	45.039	0					17	11	2	0	0	0	0.65276	1	16785	16785		40.573	0	1	75485			42220	22902	28027	28143	42766	42766					0.028414737888056152
TDVMTSEPPK	10	Unmodified	_TDVMTSEPPK_					0	0	0		tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.768310546875	2	552.765714	1103.51688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.777	1	51.777	51.277	52.277	0								0	0	0	0.38797	1	20208	20208		34.173	3.6689	1				42221	22780	28028	28144	42767	42767					-0.030742345991711773
TDVYLKSL	8	Unmodified	_TDVYLKSL_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant;C2CD5|p.D676Mfs*40|1|0.33|ENSG00000111731|chr12:22474769-22474769|T/-|frameshift_variant;nc|ENSG00000111731|Q86YS7-2|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;ENST00000535304.1_1_12:22688182-22697084:-|nuORF;ENST00000541310.5_1_12:22631189-22697084:-|nuORF	nc|ENSG00000111731|Q86YS7|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7641906738281	2	469.7633	937.512048	-0.5295	-0.00024874	4.1595	0.001954	3.63	0.0017052	469.7657138212501	37.665	0.20496	37.665	37.565	37.77	0					7	4	2	0	0	0	0.59773	1	14779	14779		49.442	0	1	229810			42222	2694;10543	28029	28145	42768	42768					0.0407924932038668
TEAAIRLGL	9	Unmodified	_TEAAIRLGL_					0	0	0		ENST00000459708.1_1_1:85121010-85121631:-|nuORF;nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	ENST00000459708.1_1_1:85121010-85121631:-|nuORF	ENST00000459708.1_1_1:85121010-85121631:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2813415527344	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.187	1	40.187	39.687	40.687	0								0	0	0	0.19847	1	15832	15832		51.193	3.5354	1				42223	3025	28030	28146	42769	42769					0.07625760305836593
TEAAIRLGL	9	Unmodified	_TEAAIRLGL_					0	0	0		ENST00000459708.1_1_1:85121010-85121631:-|nuORF;nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	ENST00000459708.1_1_1:85121010-85121631:-|nuORF	ENST00000459708.1_1_1:85121010-85121631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2815856933594	2	472.282192	942.549831	0.60851	0.00028739	-0.98615	-0.00046574	-0.37764	-0.00017835	472.2816204828874	40.128	0.21944	40.128	40.048	40.268	0					8	5	2	0	0	0	0.35021	1	15926	15926		45.972	1.8554	1	83858			42224	3025	28030	28146	42770	42770					0.07625760305836593
TEAALDAL	8	Unmodified	_TEAALDAL_					0	0	0		THAP7|p.A244T|1|0.12|ENSG00000184436|chr22:21000080-21000080|C/T|missense_variant	THAP7|p.A244T|1|0.12|ENSG00000184436|chr22:21000080-21000080|C/T|missense_variant	THAP7|p.A244T|1|0.12|ENSG00000184436|chr22:21000080-21000080|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.2109375	2	402.210901	802.407249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.412	1	21.412	20.912	21.912	0								0	0	0	1.7419	1	7098	7098		33.516	0	1				42225	22527	28031	28147	42771	42771					-0.0018587215619163544
TEAEIAHIAL	10	Unmodified	_TEAEIAHIAL_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7931518554688	2	534.290214	1066.56587	1.7701	0.00094577	-0.88371	-0.00047216	0.88644	0.00047361	534.2895042161646	41.61	0.18232	41.61	41.537	41.719	0					10	7	2	0	0	0	0.22198	1	16351	16351		76.774	35.996	1	130610			42226	4159	28032	28148	42772	42772					0.03525421752078728
TEAEIAHIAL	10	Unmodified	_TEAEIAHIAL_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.29052734375	2	534.290214	1066.56587	1.8334	0.00097958	-1.0384	-0.0005548	0.79504	0.00042478	534.2894743382408	41.56	0.21209	41.56	41.477	41.689	0					10	5	3	0	0	0	0.17732	1	16549	16549		82.241	34.583	1	276660			42227	4159	28032	28148	42773	42773					0.03525421752078728
TEAEIDAHL	9	Unmodified	_TEAEIDAHL_					0	0	0		ENSG00000100902|ENST00000261479|PSMA6;ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6	ENSG00000100902|ENST00000261479|PSMA6	ENSG00000100902|ENST00000261479|PSMA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7430419921875	2	499.743096	997.47164	-0.0039569	-1.9774E-06	0.010648	5.3214E-06	0.0066914	3.344E-06	499.7434437935657	32.808	0.093658	32.808	32.77	32.864	0					4	2	2	0	0	0	0.071197	1	12514	12514		87.754	39.839	1	77536			42228	2072	28033	28149	42774	42774					-0.027197170700674178
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7822265625	2	516.782222	1031.54989	0.31564	0.00016311	-0.16115	-8.3279E-05	0.15449	7.9836E-05	516.7817481591389	29.298	0.29201	29.298	29.231	29.523	0					15	10	2	0	0	0	0.048471	1	9232	9232		95.815	16.103	1	158630			42229	4288	28034	28150	42775	42775					0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7821044921875	2	516.782222	1031.54989	0.039929	2.0635E-05	-0.039062	-2.0187E-05	0.00086659	4.4784E-07	516.7821437939065	29.566	0.49902	29.566	29.473	29.972	0					15	12	2	0	0	0	0.037924	1	10580	10580		101.25	13.556	1	1023100			42230	4288	28034	28150	42776	42776					0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7815551757812	2	516.782222	1031.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.297	1	29.297	28.797	29.797	0								0	0	0	0.061959	1	9525	9525		82.75	15.257	1				42231	4288	28034	28150	42777	42777					0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7818603515625	2	516.782222	1031.54989	-0.50284	-0.00025986	-0.034157	-1.7652E-05	-0.53699	-0.00027751	516.7821992415923	29.579	0.29994	29.579	29.35	29.65	0					9	6	3	0	0	0	0.16806	1	10963	10963		65.465	5.3471	1	178280			42232	4288	28034	28150	42778	42778					0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7824096679688	2	516.782222	1031.54989	-1.4903	-0.00077015	1.7299	0.000894	0.23967	0.00012386	516.7830628151365	29.376	0.17254	29.376	29.285	29.458	0					7	4	2	0	0	0	0.026538	1	9862	9862		112.41	13.782	1	225080			42233	4288	28034	28150	42779	42779					0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.782470703125	2	516.782222	1031.54989	3.2967	0.0017037	-4.4196	-0.002284	-1.1229	-0.00058032	516.7800505636853	29.524	0.6063	29.524	29.324	29.93	0					21	12	2	0	0	0	0.026538	1	10811	10811		112.41	16.596	1	1231900			42234	4288	28034	28150	42780	42780					0.035377155151991246
TEAGALHVL	9	Unmodified	_TEAGALHVL_					0	0	0		ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF;nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;JAK3|p.Q39Pfs*13|1|0.25|ENSG00000105639|chr19:17844302-17844303|-/G|frameshift_variant;JAK3|p.Q39Sfs*108|1|0.12|ENSG00000105639|chr19:17844303-17844303|G/-|frameshift_variant;ENST00000528293.1_1_19:17953965-17958870:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.753662109375	2	455.753267	909.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.227	1	35.227	34.727	35.727	0								0	0	0	0.16876	1	13194	13194		55.504	16.483	1				42235	2376	28035	28151	42781	42781					0.03361498380422745
TEAGALHVL	9	Unmodified	_TEAGALHVL_					0	0	0		ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF;nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;JAK3|p.Q39Pfs*13|1|0.25|ENSG00000105639|chr19:17844302-17844303|-/G|frameshift_variant;JAK3|p.Q39Sfs*108|1|0.12|ENSG00000105639|chr19:17844303-17844303|G/-|frameshift_variant;ENST00000528293.1_1_19:17953965-17958870:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.75274658203125	2	455.753267	909.491981	0.73683	0.00033581	-1.3009	-0.00059288	-0.56405	-0.00025707	455.7525583961684	35.231	0.31359	35.231	35.115	35.429	0					11	8	2	0	0	0	0.25109	1	13190	13190		55.504	11.387	1	151650			42236	2376	28035	28151	42782	42782					0.03361498380422745
TEAGALHVL	9	Unmodified	_TEAGALHVL_					0	0	0		ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF;nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;JAK3|p.Q39Pfs*13|1|0.25|ENSG00000105639|chr19:17844302-17844303|-/G|frameshift_variant;JAK3|p.Q39Sfs*108|1|0.12|ENSG00000105639|chr19:17844303-17844303|G/-|frameshift_variant;ENST00000528293.1_1_19:17953965-17958870:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.7532958984375	2	455.753267	909.491981	-0.13893	-6.3317E-05	0.8506	0.00038766	0.71167	0.00032435	455.7535672137342	35.215	0.15556	35.215	35.148	35.304	0					6	4	2	0	0	0	0.05357	1	13630	13630		94.006	30.7	1	73838			42237	2376	28035	28151	42783	42783					0.03361498380422745
TEAGALHVL	9	Unmodified	_TEAGALHVL_					0	0	0		ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF;nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;JAK3|p.Q39Pfs*13|1|0.25|ENSG00000105639|chr19:17844302-17844303|-/G|frameshift_variant;JAK3|p.Q39Sfs*108|1|0.12|ENSG00000105639|chr19:17844303-17844303|G/-|frameshift_variant;ENST00000528293.1_1_19:17953965-17958870:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7535705566406	2	455.753267	909.491981	-0.42764	-0.0001949	0.38777	0.00017673	-0.039863	-1.8168E-05	455.75355833539277	35.185	0.16363	35.185	35.081	35.245	0					8	3	3	0	0	0	0.11118	1	13548	13548		76.847	21.342	1	126760			42238	2376	28035	28151	42784	42784					0.03361498380422745
TEAHGLARL	9	Unmodified	_TEAHGLARL_					0	0	0		nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.26934814453125	2	484.269616	966.524678	-0.095382	-4.6191E-05	-0.33258	-0.00016106	-0.42797	-0.00020725	484.2694514326206	23.62	0.16588	23.62	23.513	23.679	0					5	3	2	0	0	0	0.1115	1	8174	8174		76.774	18.963	1	307600			42239	3339	28036	28152	42785	42785					0.04007705503283887
TEAHGLARL	9	Unmodified	_TEAHGLARL_					0	0	0		nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.26995849609375	2	484.269616	966.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.476	1	23.476	22.976	23.976	0								0	0	0	0.21054	1	7171	7171		49.442	6.9671	1				42240	3339	28036	28152	42786	42786					0.04007705503283887
TEAHGLARL	9	Unmodified	_TEAHGLARL_					0	0	0		nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2695617675781	2	484.269616	966.524678	-0.58398	-0.00028281	0.3536	0.00017124	-0.23039	-0.00011157	484.2697572959541	23.593	0.2114	23.593	23.535	23.747	0					9	4	3	0	0	0	0.047412	1	8033	8033		96.19	44.855	1	501350			42241	3339	28036	28152	42787	42787					0.04007705503283887
TEAKIKQKL	9	Unmodified	_TEAKIKQKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.R426W|1|0.44|ENSG00000072501|chrX:53409482-53409482|G/A|missense_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.8322143554688	2	529.832049	1057.64954	0.45863	0.000243	0.030014	1.5903E-05	0.48864	0.0002589	529.832017320281	17.383	0.09388	17.383	17.323	17.417	0					5	3	2	0	0	0	0.13109	1	4139	4139		65.465	0	1	147410			42242	1492	28037	28153	42788	42788					0.12302577919808755
TEAKIKQKL	9	Unmodified	_TEAKIKQKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.R426W|1|0.44|ENSG00000072501|chrX:53409482-53409482|G/A|missense_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8324584960938	2	529.832049	1057.64954	0.11412	6.0466E-05	0.67449	0.00035737	0.78861	0.00041783	529.8322945670823	17.732	0.16933	17.732	17.647	17.816	0					10	4	3	0	0	0	0.14578	1	5059	5059		62.107	0	1	1042900			42243	1492	28037	28153	42789	42789					0.12302577919808755
TEAKIKQKL	9	Unmodified	_TEAKIKQKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.R426W|1|0.44|ENSG00000072501|chrX:53409482-53409482|G/A|missense_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8320922851562	2	529.832049	1057.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.446	1	17.446	16.946	17.946	0								0	0	0	0.061959	1	4373	4373		66.429	0	1				42244	1492	28037	28153	42790	42790					0.12302577919808755
TEAKIKQKL	9	Unmodified	_TEAKIKQKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.R426W|1|0.44|ENSG00000072501|chrX:53409482-53409482|G/A|missense_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.5571594238281	3	353.557125	1057.64954	1.444	0.00051055	-1.3547	-0.00047897	0.089302	3.1574E-05	353.5566547006882	17.693	0.16803	17.693	17.583	17.751	0					5	3	2	0	0	0	0.4966	1	5314	5314		32.812	1.2826	1	1059500			42245	1492	28037	28153	42791	42791					0.12302577919808755
TEAKIKQKL	9	Unmodified	_TEAKIKQKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.R426W|1|0.44|ENSG00000072501|chrX:53409482-53409482|G/A|missense_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8324584960938	2	529.832049	1057.64954	0.28651	0.0001518	0.47233	0.00025026	0.75884	0.00040206	529.8322444315048	17.676	0.16789	17.676	17.617	17.785	0					5	3	2	0	0	0	0.032383	1	5301	5301		90.37	0	1	775310			42246	1492	28037	28153	42792	42792					0.12302577919808755
TEAKLVSAAG	10	Unmodified	_TEAKLVSAAG_					0	0	0		HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant;nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A;HNF1A|p.P379Lfs*5|3|0.42|ENSG00000135100|chr12:120996564-120996564|C/-|frameshift_variant;nc|ENSG00000135100|P20823-6|HNF1A;nc|ENSG00000135100|P20823-3|HNF1A	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant	HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.76373291015625	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.515	1	29.515	29.015	30.015	0								0	0	0	0.39244	1	9616	9616		32.812	2.9709	1				42247	3966	28038	28154	42793	42793					0.03817463689279066
TEALNHHNL	9	Unmodified	_TEALNHHNL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32629660-32630092:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7623901367188	2	524.762155	1047.50976	0.094154	4.9408E-05	0.3962	0.00020791	0.49035	0.00025732	524.7624108580393	20.65	0.20468	20.65	20.594	20.799	0					7	4	3	0	0	0	0.13267	1	6451	6451		71.877	0	1	662730			42248	7898;11663	28039	28155	42794	42794					-0.012097863647113627
TEALNHHNL	9	Unmodified	_TEALNHHNL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32629660-32630092:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.76318359375	2	524.762155	1047.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.372	1	20.372	19.872	20.872	0								0	0	0	0.091069	1	5677	5677		74.255	19.479	1				42249	7898;11663	28039	28155	42795	42795					-0.012097863647113627
TEALNHHNL	9	Unmodified	_TEALNHHNL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32629660-32630092:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7625122070312	2	524.762155	1047.50976	0.11229	5.8925E-05	0.063495	3.332E-05	0.17578	9.2245E-05	524.7622634446928	20.6	0.11667	20.6	20.495	20.612	0					8	2	4	0	0	0	0.07136	1	6693	6693		87.696	10.379	1	334910			42250	7898;11663	28039	28155	42796	42796					-0.012097863647113627
TEALPENRLS	10	Unmodified	_TEALPENRLS_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;KNTC1|p.L554Yfs*3|1|0.11|ENSG00000184445|chr12:122568311-122568311|T/-|frameshift_variant;KNTC1|p.T659Nfs*33|1|0.07|ENSG00000184445|chr12:122571076-122571077|-/A|frameshift_variant	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.2953491210938	2	565.296027	1128.5775	1.907	0.001078	-2.146	-0.0012131	-0.23897	-0.00013509	565.2946476044568	26.918	0.50978	26.918	26.71	27.22	0					21	10	5	0	0	0	0.17732	1	9683	9683		82.241	2.5279	1	4044200			42251	7017	28040	28156	42797	42797					0.01835618775430703
TEALPVKLI	9	Unmodified	_TEALPVKLI_					0	0	0		nc|ENSG00000171848|P31350-2|RRM2;ENSG00000171848|ENST00000304567|RRM2;ENST00000426279.1_1_X:44168653-44169127:-|nuORF	nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000171848|P31350-2|RRM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.3105773925781	2	492.310418	982.606283	0.83422	0.00041069	-0.76004	-0.00037418	0.074176	3.6518E-05	492.31016355165355	44.509	0.11156	44.509	44.483	44.594	0					7	4	2	0	0	0	0.33044	1	17835	17835		47.657	5.1829	1	81283			42252	6327	28041	28157	42798	42798					0.11428388142530821
TEANAPPR	8	Unmodified	_TEANAPPR_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.2195129394531	2	428.219591	854.42463	-0.19851	-8.5006E-05	-0.031214	-1.3366E-05	-0.22972	-9.8373E-05	428.2195542153796	16.158	0.37202	16.158	15.869	16.241	0					19	12	2	0	0	0	0.69548	1	3728	3728		34.173	0	1	162460	+		42253	13608	28042	28158	42799	42799					-0.00840531830533564
TEAPLNPK	8	Unmodified	_TEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.2398376464844	2	435.239993	868.465432	0.93062	0.00040504	-0.32571	-0.00014176	0.60491	0.00026328	435.2398654250831	19.998	0.31466	19.998	19.811	20.126	0					22	9	3	0	0	0	0.35045	1	5236	5236		76.774	23.423	1	314180			42254	1545;6995;2493;7397;7857	28043	28159	42800	42800					0.025938094890989305
TEAPLNPK	8	Unmodified	_TEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2398376464844	2	435.239993	868.465432	-0.4347	-0.0001892	0.27802	0.00012101	-0.15667	-6.8191E-05	435.23997209234784	20.224	0.81975	20.224	19.927	20.747	0					42	16	4	0	0	0	0.54629	1	6445	6445		55.504	7.5886	1	3533900			42255	1545;6995;2493;7397;7857	28043	28159	42801	42801					0.025938094890989305
TEAPLNPK	8	Unmodified	_TEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.23992919921875	2	435.239993	868.465432	-0.52925	-0.00023035	0.49603	0.00021589	-0.033225	-1.4461E-05	435.2400732607201	20.203	0.51621	20.203	19.944	20.46	0					31	10	4	0	0	0	0.32815	1	6364	6364		79.451	8.1553	1	1355100			42256	1545;6995;2493;7397;7857	28043	28159	42802	42802					0.025938094890989305
TEAPLNPKA	9	Unmodified	_TEAPLNPKA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7581787109375	2	470.758549	939.502546	-0.0019399	-9.1324E-07	-0.59974	-0.00028233	-0.60168	-0.00028325	470.75826806075435	22.36	0.25452	22.36	22.19	22.445	0					13	7	2	0	0	0	0.30951	1	6269	6269		49.442	7.0454	1	136760			42257	1545;6995;2493;7397;7857	28044	28160	42803	42803					0.03037481034857592
TEAPLNPKA	9	Unmodified	_TEAPLNPKA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7582092285156	2	470.758549	939.502546	0.15895	7.4828E-05	-0.82636	-0.00038902	-0.66741	-0.00031419	470.7580514646409	22.666	0.39264	22.666	22.384	22.777	0					23	9	3	0	0	0	0.032052	1	7379	7379		107.01	54.071	1	865320			42258	1545;6995;2493;7397;7857	28044	28160	42804	42804					0.03037481034857592
TEAPLNPKA	9	Unmodified	_TEAPLNPKA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7579040527344	2	470.758549	939.502546	-0.12473	-5.8719E-05	-0.61421	-0.00028914	-0.73894	-0.00034786	470.7582115264007	22.526	0.40829	22.526	22.269	22.677	0					20	8	3	0	0	0	0.24095	1	7600	7600		56.721	18.91	1	498650			42259	1545;6995;2493;7397;7857	28044	28160	42805	42805					0.03037481034857592
TEAPLNPKA	9	Unmodified	_TEAPLNPKA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7583312988281	2	470.758549	939.502546	-0.20802	-9.7928E-05	0.18906	8.9001E-05	-0.018964	-8.9275E-06	470.7584771277267	22.398	0.24555	22.398	22.259	22.505	0					9	5	2	0	0	0	0.24095	1	6676	6676		56.721	26.403	1	71621			42260	1545;6995;2493;7397;7857	28044	28160	42806	42806					0.03037481034857592
TEAPLNPKA	9	Unmodified	_TEAPLNPKA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7583923339844	2	470.758549	939.502546	-0.5452	-0.00025666	0.13634	6.4182E-05	-0.40887	-0.00019248	470.75855346496024	22.547	0.41586	22.547	22.239	22.655	0					21	8	3	0	0	0	0.19605	1	7480	7480		62.107	24.948	1	804160			42261	1545;6995;2493;7397;7857	28044	28160	42807	42807					0.03037481034857592
TEAQANQISL	10	Unmodified	_TEAQANQISL_					0	0	0		nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7754516601562	2	537.774928	1073.5353	0.7742	0.00041635	-0.18684	-0.00010048	0.58736	0.00031587	537.7749101408099	36.909	0.11167	36.909	36.846	36.957	0					8	5	2	0	0	0	0.34979	1	12087	12087		61.765	0.073281	1	36512			42262	2627	28045	28161	42808	42808					0.0014764336706321046
TEAQANQISL	10	Unmodified	_TEAQANQISL_					0	0	0		nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7754516601562	2	537.774928	1073.5353	0.22172	0.00011924	-0.018647	-1.0028E-05	0.20307	0.00010921	537.7749239720356	37.216	0.29245	37.216	37.131	37.423	0					15	8	2	0	0	0	0.026945	1	14097	14097		120.27	34.411	1	296130			42263	2627	28045	28161	42809	42809					0.0014764336706321046
TEAQANQISL	10	Unmodified	_TEAQANQISL_					0	0	0		nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7754516601562	2	537.774928	1073.5353	1.8873	0.0010149	0.67912	0.00036521	2.5664	0.0013801	537.775494411427	37.207	0.41168	37.207	37.087	37.498	0					21	12	2	0	0	0	0.13022	1	14562	14562		90.149	15.984	1	474800			42264	2627	28045	28161	42810	42810					0.0014764336706321046
TEAQANQISL	10	Unmodified	_TEAQANQISL_					0	0	0		nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7772216796875	2	537.774928	1073.5353	-1.4329	-0.0007706	3.2081	0.0017252	1.7751	0.00095462	537.7767139222855	36.976	0.1892	36.976	36.883	37.073	0					9	7	2	0	0	0	0.33468	1	13233	13233		63.426	10.49	1	88984			42265	2627	28045	28161	42811	42811					0.0014764336706321046
TEAQANQISL	10	Unmodified	_TEAQANQISL_					0	0	0		nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7755737304688	2	537.774928	1073.5353	3.3446	0.0017986	-2.0239	-0.0010884	1.3207	0.00071022	537.7739011971644	37.145	0.40973	37.145	37.04	37.45	0					12	8	3	0	0	0	0.048505	1	14510	14510		109.83	37.952	1	569550			42266	2627	28045	28161	42812	42812					0.0014764336706321046
TEARDGHLRA	10	Unmodified	_TEARDGHLRA_					0	0	0		ENST00000560168.1_1_19:46269191-46269407:-|nuORF	ENST00000560168.1_1_19:46269191-46269407:-|nuORF	ENST00000560168.1_1_19:46269191-46269407:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.2933959960938	2	563.291611	1124.56867	3.4696	0.0019544	-0.36661	-0.00020651	3.103	0.0017479	563.2914157087865	30.269	0.26172	30.269	30.163	30.425	0					10	5	2	0	0	0	0.1998	1	11197	11197		79.489	13.06	1	2341200			42267	10684	28046	28162	42813	42813					0.011366899296263
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7613525390625	2	496.761623	991.508694	0.12561	6.2397E-05	-0.72318	-0.00035925	-0.59757	-0.00029685	496.76139920773284	31.783	0.37659	31.783	31.651	32.028	0					56	16	5	0	0	0	0.032383	1	10211	10211		106.68	43.377	1	2386500		+	42268	635	28047	28163	42814	42814					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7615661621094	2	496.761623	991.508694	0.71589	0.00035563	-1.2053	-0.00059877	-0.48946	-0.00024315	496.76124452472885	32.072	0.49407	32.072	31.899	32.393	0					56	12	7	0	0	0	0.063171	1	11705	11705		90.601	27.295	1	10637000		+	42269	635	28047	28163	42815	42815					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7615661621094	2	496.761623	991.508694	0.76379	0.00037942	-1.522	-0.00075608	-0.75822	-0.00037666	496.7610372529397	32.038	0.84401	32.038	31.653	32.497	0					48	18	5	0	0	0	0.095583	1	12112	12112		80.455	23.734	1	11850000		+	42270	635	28047	28163	42816	42816					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7613830566406	2	496.761623	991.508694	0.15004	7.4536E-05	-0.61572	-0.00030587	-0.46568	-0.00023133	496.76133238518935	31.781	0.42193	31.781	31.666	32.088	0					36	12	4	0	0	0	0.04067	1	10978	10978		98.582	39.8	1	2862100		+	42271	635	28047	28163	42817	42817					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.76141357421875	2	496.761623	991.508694	0.98104	0.00048735	-1.3451	-0.0006682	-0.36406	-0.00018085	496.76104721431824	32.008	0.41763	32.008	31.852	32.27	0					41	8	6	0	0	0	0.063171	1	12011	12011		90.601	37.249	1	15939000		+	42272	635	28047	28163	42818	42818					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7614440917969	2	496.761623	991.508694	2.8887	0.001435	-3.5917	-0.0017842	-0.70295	-0.0003492	496.76019753952636	31.979	1.2198	31.979	31.586	32.806	0					62	24	5	0	0	0	0.070005	1	12005	12005		88.177	18.549	1	5774700		+	42273	635	28047	28163	42819	42819					0.012599992663922421
TEARRHAQ	8	Unmodified	_TEARRHAQ_					0	0	0			REV__nc|ENSG00000187486|Q14654-2|KCNJ11	REV__nc|ENSG00000187486|Q14654-2|KCNJ11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.75286865234375	2	484.754664	967.494775	-0.21484	-0.00010415	-2.9057	-0.0014085	-3.1205	-0.0015127	484.7532527655394	30.403	0.17582	30.403	30.311	30.487	0					7	4	2	0	0	0	0.7126	1	10967	10967		31.955	2.8053	1	177200	+		42274	14311	28048	28164	42820	42820					0.009727665579475797
TEASGTGNMKF	11	Unmodified	_TEASGTGNMKF_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100504|ENST00000216392|PYGL	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	571.760009765625	2	571.760963	1141.50737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.804	1	37.804	37.304	38.304	0								0	0	0	0.23171	1	12769	12769		60.118	1.8883	1				42275	2084	28049	28165	42821	42821					-0.057720028846688365
TEATMTFKY	9	Unmodified	_TEATMTFKY_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.M1189*|1|0.34|ENSG00000084674|chr2:21015204-21015204|T/-|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.K1043N|1|0.08|ENSG00000084674|chr2:21016642-21016642|C/A|missense_variant;APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2601318359375	2	546.257525	1090.5005	1.9198	0.0010487	2.3533	0.0012855	4.2731	0.0023342	546.259764293337	41.591	1.0827	41.591	41.06	42.143	0					59	28	5	0	0	0	0.51817	1	16421	16421		30.504	3.7075	1	1401700			42276	187;186	28050	28166	42822	42822					-0.04113315765243897
TEAVADGVVT	10	Unmodified	_TEAVADGVVT_					0	0	0			REV__nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	REV__nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2449951171875	2	481.245472	960.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.378	1	18.378	17.878	18.878	0								0	0	0	0.32041	1	4789	4789		47.657	6.8792	1		+		42277	20988	28051	28167	42823	42823					-0.005428329272717747
TEAVVKEKL	9	Unmodified	_TEAVVKEKL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.8031005859375	2	508.802957	1015.59136	-0.10172	-5.1758E-05	4.3444	0.0022104	4.2427	0.0021587	508.8053008999828	22.549	0.1681	22.549	22.46	22.628	0					9	5	2	0	0	0	0.063171	1	6376	6376		90.601	23.107	1	140360			42278	2899	28052	28168	42824	42824					0.08418896274520193
TEAVVKEKL	9	Unmodified	_TEAVVKEKL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.80303955078125	2	508.802957	1015.59136	-0.021376	-1.0876E-05	3.7491	0.0019075	3.7277	0.0018967	508.80490116804674	22.842	0.21326	22.842	22.756	22.969	0					12	5	3	0	0	0	0.026538	1	7487	7487		112.41	13.782	1	918090			42279	2899	28052	28168	42825	42825					0.08418896274520193
TEAVVKEKL	9	Unmodified	_TEAVVKEKL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.80291748046875	2	508.802957	1015.59136	-0.54006	-0.00027478	0.47995	0.0002442	-0.060108	-3.0583E-05	508.80315625292343	22.568	0.13455	22.568	22.47	22.604	0					10	4	3	0	0	0	0.015496	1	6654	6654		129.42	30.792	1	477700			42280	2899	28052	28168	42826	42826					0.08418896274520193
TEAVVKEKL	9	Unmodified	_TEAVVKEKL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.8029479980469	2	508.802957	1015.59136	1.1549	0.00058763	-1.2053	-0.00061327	-0.050394	-2.564E-05	508.8023030774716	22.751	0.16688	22.751	22.644	22.811	0					11	3	4	0	0	0	0.0047071	1	7755	7755		159.28	41.465	1	3028000			42281	2899	28052	28168	42827	42827					0.08418896274520193
TECGKAFSL	9	Carbamidomethyl (C)	_TEC(Carbamidomethyl (C))GKAFSL_	TEC(1)GKAFSL		TEC(58)GKAFSL		0	1	0		nc|ENSG00000196150|P15622|ZNF250;ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622-2|ZNF250	nc|ENSG00000196150|P15622|ZNF250	nc|ENSG00000196150|P15622|ZNF250	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.74261474609375	2	506.742042	1011.46953	0.14882	7.5412E-05	0.66478	0.00033687	0.8136	0.00041229	506.74224363492146	33.195	0.17469	33.195	33.109	33.283	0					7	4	2	0	0	0	0.22837	1	12697	12697		58.23	15.834	1	132770			42282	7328	28053	28169	42828	42828	309				-0.03574469079501341
TECSVRNGS	9	Unmodified	_TECSVRNGS_					0	0	0		IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7113952636719	2	476.711273	951.407994	0.63535	0.00030288	-0.57073	-0.00027207	0.064622	3.0806E-05	476.71097564710396	25.3	1.0467	25.3	25.138	26.185	0					45	19	4	0	0	0	0.33044	1	8951	8951		47.657	47.657	1	1228300			42283	7424	28054	28170	42829	42829					-0.06965400778767616
TECVKQICL	9	2 Carbamidomethyl (C)	_TEC(Carbamidomethyl (C))VKQIC(Carbamidomethyl (C))L_	TEC(1)VKQIC(1)L		TEC(66)VKQIC(66)L		0	2	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.7838745117188	2	575.783384	1149.55222	-0.088677	-5.1059E-05	-2.7945	-0.001609	-2.8832	-0.0016601	575.7838746332112	33.508	0.32958	33.508	33.368	33.698	0					24	8	4	0	0	0	0.16002	1	12416	12416		66.429	20.457	1	385420			42284	6170	28055	28171	42830	42830	262;263				-0.016578953429871035
TECVKQICL	9	Carbamidomethyl (C)	_TEC(Carbamidomethyl (C))VKQICL_	TEC(1)VKQICL		TEC(48)VKQIC(-48)L		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2734985351562	2	547.272652	1092.53075	1.8323	0.0010027	-1.0047	-0.00054987	0.82752	0.00045288	547.2723876052021	35.082	0.36925	35.082	34.959	35.328	0					20	10	3	0	0	0	0.1424	1	13589	13589		69.628	20.186	2	356470			42285	6170	28055	28172	42831	42831	262;263				-0.011812803717248244
TEDGSRVTL	9	Unmodified	_TEDGSRVTL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3;ENST00000489770.1_1_14:99866590-99879383:-|nuORF;nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2483215332031	2	489.248546	976.482539	0.77846	0.00038086	-1.0769	-0.00052689	-0.29847	-0.00014603	489.24803416222977	26.457	0.23029	26.457	26.368	26.598	0					9	5	2	0	0	0	0.28504	1	9141	9141		51.528	14.369	1	429140			42286	6970	28056	28173	42832	42832					-0.006643146957458157
TEDLIRMR	8	Unmodified	_TEDLIRMR_					0	0	0		ENSG00000159023|ENST00000343067|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant	ENSG00000159023|ENST00000343067|EPB41	ENSG00000159023|ENST00000343067|EPB41	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2797241210938	2	517.276583	1032.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.291	1	22.291	21.791	22.791	0								0	0	0	1.7419	1	7392	7392		60.972	4.2509	1				42287	5293	28057	28174	42833	42833					0.02364614940051979
TEDSKRIAVV	10	Unmodified	_TEDSKRIAVV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.314697265625	2	559.31422	1116.61389	1.826	0.0010213	-1.4235	-0.00079621	0.40245	0.0002251	559.313482974083	23.427	0.21721	23.427	23.318	23.535	0					8	4	2	0	0	0	0.19191	1	7956	7956		80.455	14.989	1	620400			42288	1469	28058	28175	42834	42834					0.06024495672136254
TEEERQKIE	9	Unmodified	_TEEERQKIE_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	581.7918701171875	2	581.290942	1160.56733	-0.14327	-8.3283E-05	-0.077487	-4.5042E-05	-0.22076	-0.00012833	581.2914085863372	17.416	0.058395	17.416	17.39	17.448	0					4	2	2	0	0	0	0.30841	1	4365	4365		49.536	1.8787	1	72959			42289	4016	28059	28176	42835	42835					-0.00652988949786959
TEEERRAEL	9	Unmodified	_TEEERRAEL_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.783935546875	2	566.783284	1131.55202	1.7671	0.0010016	-0.7663	-0.00043433	1.0008	0.00056723	566.7828492988544	19.484	0.35542	19.484	19.402	19.757	0					13	8	3	0	0	0	0.026848	1	5895	5895		85.161	2.4103	1	1539300			42290	4370	28060	28177	42836	42836					-0.008498557469920343
TEEERRAEL	9	Unmodified	_TEEERRAEL_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.784423828125	2	566.783284	1131.55202	0.12771	7.2383E-05	1.5867	0.00089931	1.7144	0.0009717	566.7842685756829	19.157	0.16532	19.157	19.086	19.252	0					10	5	3	0	0	0	0.3269	1	5145	5145		25.574	13.367	1	194030			42291	4370	28060	28177	42837	42837					-0.008498557469920343
TEEERRAEL	9	Unmodified	_TEEERRAEL_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.78369140625	2	566.783284	1131.55202	0.7549	0.00042787	-0.38102	-0.00021596	0.37388	0.00021191	566.7832190227953	19.258	0.13869	19.258	19.151	19.289	0					5	3	2	0	0	0	0.070005	1	5195	5195		62.107	12.571	1	126050			42292	4370	28060	28177	42838	42838					-0.008498557469920343
TEEERRAEL	9	Unmodified	_TEEERRAEL_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.7836303710938	2	566.783284	1131.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.407	1	19.407	18.907	19.907	0								0	0	0	0.040385	1	5993	5993		54.776	0	1				42293	4370	28060	28177	42839	42839					-0.008498557469920343
TEENVPLQ	8	Unmodified	_TEENVPLQ_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7892761230469	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.563	1	43.563	43.063	44.063	0								0	0	0	1.7419	1	17434	17434		37.159	4.3467	1		+		42294	15193	28061	28178	42840	42840					-0.01691102098743613
TEEQAPKKQ	9	Unmodified	_TEEQAPKKQ_					0	0	0			REV__chr12:65951415-65963245|431|16.75|0.63|4.73|+|0|HMGA2,HMGA2|1	REV__chr12:65951415-65963245|431|16.75|0.63|4.73|+|0|HMGA2,HMGA2|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.77978515625	2	529.77747	1057.54039	3.446	0.0018256	0.79414	0.00042072	4.2402	0.0022463	529.7780349660919	22.863	0.31328	22.863	22.755	23.069	0					10	6	2	0	0	0	0.22377	1	7655	7655		58.782	2.0609	1	2159200	+		42295	12465	28062	28179	42841	42841					0.01391947229649304
TEEQVQRSL	9	Unmodified	_TEEQVQRSL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.L1122I|1|0.14|ENSG00000261150|chr8:143869890-143869890|G/T|missense_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2808837890625	2	545.280377	1088.5462	1.1884	0.00064801	-0.16873	-9.2005E-05	1.0197	0.00055601	545.2800339922177	24.306	0.12731	24.306	24.269	24.396	0					6	4	2	0	0	0	0.30841	1	7176	7176		49.536	7.1399	1	78655			42296	8044	28063	28180	42842	42842					0.0054704574135939765
TEEQVQRSL	9	Unmodified	_TEEQVQRSL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.L1122I|1|0.14|ENSG00000261150|chr8:143869890-143869890|G/T|missense_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2805786132812	2	545.280377	1088.5462	0.39201	0.00021376	-0.24539	-0.00013381	0.14662	7.9946E-05	545.2802380197754	24.611	0.31024	24.611	24.388	24.698	0					12	7	2	0	0	0	0.15558	1	8314	8314		66.962	24.098	1	386730			42297	8044	28063	28180	42843	42843					0.0054704574135939765
TEEVELKF	8	Unmodified	_TEEVELKF_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7586364746094	2	497.758215	993.501877	0.8027	0.00039955	0.20759	0.00010333	1.0103	0.00050288	497.75823955307186	27.904	0.87871	27.904	27.554	28.432	0					42	18	4	0	0	0	0.49216	1	10150	10150		60.972	0	1	2603700			42298	1130	28064	28181	42844	42844					0.004866415951596537
TEEVRRDDL	9	Unmodified	_TEEVRRDDL_					0	0	0		ENST00000590717.1_1_19:36035753-36035843:-|nuORF	ENST00000590717.1_1_19:36035753-36035843:-|nuORF	ENST00000590717.1_1_19:36035753-36035843:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.1913757324219	3	378.191282	1131.55202	0.68257	0.00025814	-0.50395	-0.00019059	0.17862	6.7551E-05	378.19117269481535	19.386	0.21425	19.386	19.326	19.541	0					7	4	3	0	0	0	0.30951	1	5997	5997		49.442	1.7842	1	661010			42299	10956	28065	28182	42845	42845					-0.008498557469920343
TEFAKQTSL	9	Unmodified	_TEFAKQTSL_					0	0	0		TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant;nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant	TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7691040039062	2	512.769114	1023.52368	3.1402	0.0016102	-3.4019	-0.0017444	-0.2617	-0.00013419	512.7674214166167	28.439	0.21449	28.439	28.327	28.542	0					8	4	2	0	0	0	0.061298	1	10314	10314		91.265	21.638	1	476790			42300	2004	28066	28183	42846	42846					0.01285446343717922
TEFHELEKI	9	Unmodified	_TEFHELEKI_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.295654296875	2	573.295496	1144.57644	1.6954	0.00097198	-1.3813	-0.00079192	0.31409	0.00018006	573.2949169009871	33.53	0.17635	33.53	33.456	33.632	0					6	4	2	0	0	0	0.28897	1	12425	12425		51.193	10.415	1	116290			42301	5909	28067	28184	42847	42847					0.00993404406517584
TEFLGHIEL	9	Unmodified	_TEFLGHIEL_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7794799804688	2	529.779482	1057.54441	0.28654	0.0001518	0.41732	0.00022109	0.70386	0.00037289	529.7798197819094	41.889	0.24617	41.889	41.734	41.98	0					20	11	2	0	0	0	0.37197	1	16431	16431		44.117	11.304	1	210660	+		42302	12081	28068	28185	42848	42848					0.017940367233904908
TEFLLMIF	8	Unmodified	_TEFLLMIF_					0	0	0		FLG2|p.V1359Sfs*177|1|0.08|ENSG00000143520|chr1:152353711-152353711|C/-|frameshift_variant;FLG2|p.G1513Afs*23|1|0.04|ENSG00000143520|chr1:152353248-152353248|C/-|frameshift_variant;FLG2|p.S1813*|1|0.04|ENSG00000143520|chr1:152352348-152352348|G/-|frameshift_variant;FLG2|p.D1885Afs*43|1|0.04|ENSG00000143520|chr1:152352122-152352132|CACTTCACTGT/-|frameshift_variant;ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862	FLG2|p.V1359Sfs*177|1|0.08|ENSG00000143520|chr1:152353711-152353711|C/-|frameshift_variant	FLG2|p.V1359Sfs*177|1|0.08|ENSG00000143520|chr1:152353711-152353711|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2742614746094	2	507.272447	1012.53034	2.941	0.0014919	0.67022	0.00033998	3.6112	0.0018319	507.27263802965166	44.87	0.25762	44.87	44.757	45.015	0					19	10	3	0	0	0	0.59916	1	17984	17984		49.211	10.189	1	126700		+	42303	662	28069	28186	42849	42849					0.02457667970725197
TEFRNIQKL	9	Unmodified	_TEFRNIQKL_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.5522155761719	3	383.552262	1147.63496	0.3213	0.00012324	-0.41951	-0.0001609	-0.098205	-3.7667E-05	383.5519326908848	29.015	0.3005	29.015	28.911	29.211	0					13	6	3	0	0	0	0.39215	1	10710	10710		49.536	24.41	1	687560			42304	4850	28070	28187	42850	42850					0.06704505771654112
TEFRNIQKL	9	Unmodified	_TEFRNIQKL_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.824951171875	2	574.824755	1147.63496	1.6776	0.00096433	-1.3326	-0.00076604	0.34497	0.00019829	574.8240444090492	28.95	0.21616	28.95	28.843	29.059	0					9	4	3	0	0	0	0.22837	1	10561	10561		58.23	8.6939	1	749740			42305	4850	28070	28187	42851	42851					0.06704505771654112
TEFTNKNML	9	Unmodified	_TEFTNKNML_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.26806640625	2	549.268424	1096.5223	0.52243	0.00028695	-1.119	-0.00061461	-0.59653	-0.00032765	549.2682249913943	33.096	0.13858	33.096	33.009	33.147	0					12	4	4	0	0	0	0.16806	1	12211	12211		65.465	8.7443	1	253190			42306	6004	28071	28188	42852	42852					-0.02210511016687633
TEFTNKNML	9	Unmodified	_TEFTNKNML_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2678833007812	2	549.268424	1096.5223	0.35968	0.00019756	-2.2787	-0.0012516	-1.919	-0.001054	549.2671707277802	32.893	0.27333	32.893	32.767	33.04	0					28	10	4	0	0	0	0.1424	1	10996	10996		69.628	12.907	1	355610			42307	6004	28071	28188	42853	42853					-0.02210511016687633
TEFTNKNML	9	Unmodified	_TEFTNKNML_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.267578125	2	549.268424	1096.5223	1.736	0.00095351	-3.9515	-0.0021704	-2.2155	-0.0012169	549.266275157506	33.101	0.43983	33.101	32.962	33.402	0					25	10	4	0	0	0	0.032052	1	12629	12629		107.01	2.261	1	2275800			42308	6004	28071	28188	42854	42854					-0.02210511016687633
TEFTNKNML	9	Unmodified	_TEFTNKNML_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2684936523438	2	549.268424	1096.5223	1.1578	0.00063596	-2.4691	-0.0013562	-1.3113	-0.00072024	549.2669110149335	32.891	0.212	32.891	32.762	32.974	0					16	5	4	0	0	0	0.048471	1	11480	11480		95.815	27.028	1	335500			42309	6004	28071	28188	42855	42855					-0.02210511016687633
TEFVHGGG	8	Unmodified	_TEFVHGGG_					0	0	0		ENST00000469172.5_1_10:70091245-70091596:+|nuORF	ENST00000469172.5_1_10:70091245-70091596:+|nuORF	ENST00000469172.5_1_10:70091245-70091596:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.18768310546875	2	402.18776	802.360967	0.052182	2.0987E-05	-0.29338	-0.00011799	-0.2412	-9.7007E-05	402.18762733682064	23.223	0.21585	23.223	23.162	23.378	0					9	4	3	0	0	0	0.74117	1	8005	8005		28.254	1.4582	1	272400			42310	9822	28072	28189	42856	42856					-0.048118922676053444
TEGHLLAAR	9	Unmodified	_TEGHLLAAR_					0	0	0			REV__ENST00000479678.1_1_10:92655618-92660433:+|nuORF	REV__ENST00000479678.1_1_10:92655618-92660433:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	323.18212890625	3	323.182169	966.524678	0.5586	0.00018053	-0.78822	-0.00025474	-0.22962	-7.4209E-05	323.1819775429608	23.637	0.26659	23.637	23.529	23.796	0					10	5	3	0	0	0	0.61124	1	8183	8183		25.574	8.2091	1	456460	+		42311	15395	28073	28190	42857	42857					0.040077055032725184
TEGKLLLGI	9	Unmodified	_TEGKLLLGI_					0	0	0			REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.29437255859375	2	472.294768	942.574983	0.61142	0.00028877	-0.89913	-0.00042466	-0.28772	-0.00013589	472.2943241941469	37.761	0.50367	37.761	37.4	37.904	0					22	10	3	0	0	0	0.42902	1	14752	14752		39.253	2.0937	1	240830	+		42312	22079	28074	28191	42858	42858					0.10139815108436778
TEGKTFQL	8	Unmodified	_TEGKTFQL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2447509765625	2	462.245275	922.475997	0.08442	3.9023E-05	-0.4563	-0.00021092	-0.37188	-0.0001719	462.2450690874805	32.4	0.21754	32.4	32.274	32.492	0					12	5	3	0	0	0	0.29212	1	11882	11882		85.161	13.283	1	351460			42313	2421	28075	28192	42859	42859					0.011657921435130447
TEGKTFQL	8	Unmodified	_TEGKTFQL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2450866699219	2	462.245275	922.475997	-0.14711	-6.8003E-05	-0.5907	-0.00027305	-0.73781	-0.00034105	462.24497532174206	32.377	0.3853	32.377	32.242	32.627	0					24	9	4	0	0	0	0.29212	1	12288	12288		85.161	18.732	1	1168300			42314	2421	28075	28192	42860	42860					0.011657921435130447
TEGKTFQL	8	Unmodified	_TEGKTFQL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.2452697753906	2	462.245275	922.475997	-0.46797	-0.00021632	0.46692	0.00021583	-0.0010474	-4.8414E-07	462.2454321305237	32.329	0.4205	32.329	32.219	32.64	0					18	8	3	0	0	0	0.36488	1	12187	12187		75.043	8.614	1	1316500			42315	2421	28075	28192	42861	42861					0.011657921435130447
TEGKVGYEL	9	Unmodified	_TEGKVGYEL_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2556457519531	2	498.25584	994.497126	1.5418	0.00076823	-0.96158	-0.00047911	0.58025	0.00028911	498.2552377704746	30.411	0.19497	30.411	30.333	30.528	0					12	7	2	0	0	0	0.44949	1	9675	9675		37.508	9.2539	1	124620			42316	2375	28076	28193	42862	42862					-0.0003424254761057455
TEGKVGYEL	9	Unmodified	_TEGKVGYEL_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2557373046875	2	498.25584	994.497126	0.56649	0.00028226	-1.0277	-0.00051205	-0.4612	-0.00022979	498.2552426890298	30.684	0.36458	30.684	30.579	30.944	0					21	8	4	0	0	0	0.17062	1	11076	11076		65.157	25.904	1	1284700			42317	2375	28076	28193	42863	42863					-0.0003424254761057455
TEGKVGYEL	9	Unmodified	_TEGKVGYEL_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2557373046875	2	498.25584	994.497126	0.69255	0.00034506	-1.012	-0.00050425	-0.31948	-0.00015918	498.2553012919967	30.667	0.47898	30.667	30.487	30.966	0					23	11	3	0	0	0	0.18505	1	11108	11108		63.426	22.648	1	1225100			42318	2375	28076	28193	42864	42864					-0.0003424254761057455
TEGLINVTY	9	Unmodified	_TEGLINVTY_					0	0	0			REV__ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	REV__ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.26434326171875	2	505.263665	1008.51278	0.80044	0.00040443	2.1074	0.0010648	2.9078	0.0014692	505.26485207674983	39.456	0.24572	39.456	39.371	39.617	0					14	9	2	0	0	0	0.13267	1	15024	15024		71.877	7.6702	1	113740	+		42319	12094	28077	28194	42865	42865					0.008860439694217348
TEGQVVNKL	9	Unmodified	_TEGQVVNKL_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant;SMTN|p.A318Pfs*39|1|0.29|ENSG00000183963|chr22:31090967-31090967|C/-|frameshift_variant;SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.27685546875	2	494.277106	986.53966	-0.067243	-3.3237E-05	-0.42502	-0.00021008	-0.49226	-0.00024331	494.2768626252421	25.867	0.39988	25.867	25.606	26.006	0					10	9	2	0	0	0	0.026538	1	7800	7800		112.41	16.22	1	210140			42320	6993	28078	28195	42866	42866					0.04585152580614249
TEGQVVNKL	9	Unmodified	_TEGQVVNKL_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant;SMTN|p.A318Pfs*39|1|0.29|ENSG00000183963|chr22:31090967-31090967|C/-|frameshift_variant;SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2769775390625	2	494.277106	986.53966	-0.45198	-0.0002234	0.0022848	1.1293E-06	-0.4497	-0.00022227	494.2770487160001	26.161	0.63542	26.161	25.732	26.368	0					20	13	3	0	0	0	0.0067848	1	8981	8981		150.36	51.732	1	1550300			42321	6993	28078	28195	42867	42867					0.04585152580614249
TEGQVVNKL	9	Unmodified	_TEGQVVNKL_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant;SMTN|p.A318Pfs*39|1|0.29|ENSG00000183963|chr22:31090967-31090967|C/-|frameshift_variant;SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2769775390625	2	494.277106	986.53966	0.6603	0.00032637	-1.2037	-0.00059494	-0.54336	-0.00026857	494.2765591621603	26.125	0.58823	26.125	25.738	26.326	0					17	10	2	0	0	0	0.020674	1	9328	9328		120.87	35.953	1	1288800			42322	6993	28078	28195	42868	42868					0.04585152580614249
TEGQVVNKL	9	Unmodified	_TEGQVVNKL_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant;SMTN|p.A318Pfs*39|1|0.29|ENSG00000183963|chr22:31090967-31090967|C/-|frameshift_variant;SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2772521972656	2	494.277106	986.53966	-0.752	-0.0003717	0.86137	0.00042576	0.10937	5.4061E-05	494.27750085741087	26.159	0.1659	26.159	26.051	26.217	0					5	3	2	0	0	0	0.44593	1	9344	9344		37.812	1.3648	1	136400			42323	6993	28078	28195	42869	42869					0.04585152580614249
TEGRITDVI	9	Unmodified	_TEGRITDVI_					0	0	0		ENSG00000117601|ENST00000367698|SERPINC1;CON__P41361	ENSG00000117601|ENST00000367698|SERPINC1	ENSG00000117601|ENST00000367698|SERPINC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2744445800781	2	502.274564	1002.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.189	1	36.189	35.689	36.689	0								0	0	0	0.19176	1	13629	13629		45.022	7.2107	1			+	42324	646	28079	28196	42870	42870					0.033408487179940494
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2430114746094	2	494.242732	986.470912	-0.050902	-2.5158E-05	0.79939	0.00039509	0.74848	0.00036993	494.2431533707508	34.039	0.39657	34.039	33.83	34.227	0					31	16	3	0	0	0	0.037924	1	11108	11108		96.19	32.884	1	166120			42325	2542	28080	28197	42871	42871					-0.022865117190917772
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.24249267578125	2	494.242732	986.470912	0.75922	0.00037524	-0.90692	-0.00044824	-0.1477	-7.3E-05	494.2423604321771	34.298	0.86348	34.298	33.92	34.783	0					45	22	4	0	0	0	0.037924	1	12773	12773		96.19	16.739	1	1547000			42326	2542	28080	28197	42872	42872					-0.022865117190917772
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2427978515625	2	494.242732	986.470912	-1.2692	-0.00062729	0.90156	0.00044559	-0.36765	-0.00018171	494.24320844811336	34.129	0.5563	34.129	33.808	34.365	0					42	23	3	0	0	0	0.085655	1	11498	11498		87.754	13.78	1	302140			42327	2542	28080	28197	42873	42873					-0.022865117190917772
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2430114746094	2	494.242732	986.470912	0.66376	0.00032806	-0.39572	-0.00019558	0.26804	0.00013248	494.2426564166447	34.307	0.90571	34.307	33.829	34.735	0					39	22	4	0	0	0	0.12834	1	13218	13218		76.774	13.468	1	1812200			42328	2542	28080	28197	42874	42874					-0.022865117190917772
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.24285888671875	2	494.242732	986.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.132	1	34.132	33.632	34.632	0								0	0	0	0.28666	1	12052	12052		38.806	0	1				42329	2542	28080	28197	42875	42875					-0.022865117190917772
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.24224853515625	2	494.242732	986.470912	0.047209	2.3333E-05	-0.37192	-0.00018382	-0.32471	-0.00016049	494.2425068159936	34.09	0.48597	34.09	33.807	34.293	0					28	14	3	0	0	0	0.16806	1	12027	12027		68.787	5.4806	1	294760			42330	2542	28080	28197	42876	42876					-0.022865117190917772
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.242431640625	2	494.242732	986.470912	-2.5179	-0.0012445	1.9086	0.0009433	-0.60935	-0.00030117	494.24367424077707	34.091	0.33165	34.091	33.949	34.281	0					17	10	2	0	0	0	0.21263	1	12039	12039		63.306	8.53	1	108110			42331	2542	28080	28197	42877	42877					-0.022865117190917772
TEGYQPPPV	9	Unmodified	_TEGYQPPPV_					0	0	0		ENSG00000108639|ENST00000225777|SYNGR2;ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENSG00000108639|ENST00000225777|SYNGR2	ENSG00000108639|ENST00000225777|SYNGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.24237060546875	2	494.242732	986.470912	0.89982	0.00044473	-1.2074	-0.00059675	-0.30758	-0.00015202	494.2421716221886	34.286	0.94224	34.286	33.842	34.784	0					39	19	4	0	0	0	0.037924	1	13136	13136		96.19	21.935	1	2101600			42332	2542	28080	28197	42878	42878					-0.022865117190917772
TEHAEFLHC	9	Unmodified	_TEHAEFLHC_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.7369995117188	2	543.737291	1085.46003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.318	1	29.318	28.818	29.818	0								0	0	0	0.28164	1	10843	10843		38.806	14.603	1				42333	831	28081	28198	42879	42879					-0.07928237365013047
TEHAHQVVV	9	Unmodified	_TEHAHQVVV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2669982910156	2	510.267073	1018.51959	1.0538	0.00053774	-0.9389	-0.00047909	0.11494	5.8649E-05	510.266458467559	18.83	0.090326	18.83	18.789	18.88	0					4	2	2	0	0	0	0.53083	1	4764	4764		29.15	2.1022	1	144760			42334	1469	28082	28199	42880	42880					0.011074016406723786
TEHAHQVVV	9	Unmodified	_TEHAHQVVV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2670593261719	2	510.267073	1018.51959	0.96723	0.00049354	-0.77496	-0.00039544	0.19227	9.8109E-05	510.2666626510078	19.174	0.44884	19.174	19.043	19.492	0					24	10	5	0	0	0	0.17854	1	5749	5749		64.207	18.255	1	1327300			42335	1469	28082	28199	42881	42881					0.011074016406723786
TEHAHQVVV	9	Unmodified	_TEHAHQVVV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2669677734375	2	510.267073	1018.51959	0.26501	0.00013523	-0.3792	-0.0001935	-0.11419	-5.8267E-05	510.2668779537633	18.933	0.14717	18.933	18.845	18.992	0					6	3	2	0	0	0	0.25716	1	5051	5051		54.776	15.523	1	152040			42336	1469	28082	28199	42882	42882					0.011074016406723786
TEHAHQVVV	9	Unmodified	_TEHAHQVVV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.26708984375	2	510.267073	1018.51959	1.3713	0.00069974	-1.1722	-0.00059816	0.19907	0.00010158	510.26646188952486	19.088	0.31542	19.088	18.929	19.245	0					20	6	5	0	0	0	0.25716	1	5846	5846		54.776	3.4409	1	1961400			42337	1469	28082	28199	42883	42883					0.011074016406723786
TEHAKRKTV	9	Unmodified	_TEHAKRKTV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.2087707519531	3	357.208607	1068.60399	0.71892	0.00025681	-0.91981	-0.00032856	-0.20088	-7.1757E-05	357.2083936850759	11.656	0.11916	11.656	11.603	11.722	0					7	4	2	0	0	0	0.53083	1	2285	2285		62.107	35.415	1	353360			42338	5259	28083	28200	42884	42884					0.07243352457408037
TEHAKRKTV	9	Unmodified	_TEHAKRKTV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3095092773438	2	535.309272	1068.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.658	1	11.658	11.158	12.158	0								0	0	0	0.0052769	1	2290	2290		114.89	74.322	1				42339	5259	28083	28200	42885	42885					0.07243352457408037
TEHAKRKTV	9	Unmodified	_TEHAKRKTV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.3103637695312	2	535.309272	1068.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.442	1	11.442	10.942	11.942	0								0	0	0	0.34845	1	2203	2203		25.574	0	1				42340	5259	28083	28200	42886	42886					0.07243352457408037
TEHAKRKTV	9	Unmodified	_TEHAKRKTV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.309814453125	2	535.309272	1068.60399	1.8035	0.00096541	-1.0122	-0.00054186	0.79123	0.00042355	535.3088594504122	11.654	0.19414	11.654	11.61	11.804	0					6	5	2	0	0	0	0.022525	1	2450	2450		117.81	68.37	1	289620			42341	5259	28083	28200	42887	42887					0.07243352457408037
TEHAKRKTV	9	Unmodified	_TEHAKRKTV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.20843505859375	3	357.208607	1068.60399	-0.059545	-2.127E-05	-0.11753	-4.1983E-05	-0.17708	-6.3253E-05	357.20860838504706	11.631	0.09576	11.631	11.585	11.68	0					5	3	2	0	0	0	0.59802	1	2302	2302		44.377	44.377	1	216120			42342	5259	28083	28200	42888	42888					0.07243352457408037
TEHAKRKTV	9	Unmodified	_TEHAKRKTV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.3101196289062	2	535.309272	1068.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.657	1	11.657	11.157	12.157	0								0	0	0	0.35377	1	2309	2309		24.519	16.829	1				42343	5259	28083	28200	42889	42889					0.07243352457408037
TEHEAPVSL	9	Unmodified	_TEHEAPVSL_					0	0	0		ENSG00000181284|ENST00000323206|TMEM102	ENSG00000181284|ENST00000323206|TMEM102	ENSG00000181284|ENST00000323206|TMEM102	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7454528808594	2	491.745639	981.476725	-0.73339	-0.00036064	1.0214	0.00050228	0.28804	0.00014164	491.74612684331964	29.234	0.1918	29.234	29.129	29.321	0					6	4	2	0	0	0	0.26904	1	10811	10811		53.351	7.3995	1	161250			42344	6847	28084	28201	42890	42890					-0.014754132074131121
TEHEKVAIL	9	Unmodified	_TEHEKVAIL_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2935791015625	2	520.292756	1038.57096	1.4626	0.000761	-0.12265	-6.3815E-05	1.34	0.00069718	520.2927026637423	26.293	0.20525	26.293	26.193	26.398	0					11	6	3	0	0	0	0.16806	1	7963	7963		65.465	22.601	1	140990			42345	4480	28085	28202	42891	42891					0.053217256147036096
TEHEKVAIL	9	Unmodified	_TEHEKVAIL_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2928466796875	2	520.292756	1038.57096	1.4368	0.00074755	-0.90234	-0.00046948	0.53444	0.00027807	520.2923264382683	26.539	0.32248	26.539	26.453	26.775	0					19	7	4	0	0	0	0.085655	1	9182	9182		82.75	39.886	1	1099400			42346	4480	28085	28202	42892	42892					0.053217256147036096
TEHEKVAIL	9	Unmodified	_TEHEKVAIL_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2930908203125	2	520.292756	1038.57096	0.33673	0.0001752	0.2892	0.00015047	0.62593	0.00032567	520.2928313752352	26.51	0.37253	26.51	26.298	26.671	0					17	7	4	0	0	0	0.25761	1	9384	9384		54.722	13.944	1	1116600			42347	4480	28085	28202	42893	42893					0.053217256147036096
TEHEKVAIL	9	Unmodified	_TEHEKVAIL_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2927856445312	2	520.292756	1038.57096	1.6232	0.00084453	-1.2062	-0.0006276	0.41695	0.00021694	520.2921273280051	26.494	0.424	26.494	26.332	26.756	0					15	8	3	0	0	0	0.12834	1	9377	9377		72.879	8.672	1	1490800			42348	4480	28085	28202	42894	42894					0.053217256147036096
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.8646545410156	3	368.864729	1103.57236	0.073473	2.7102E-05	-0.35768	-0.00013194	-0.28421	-0.00010483	368.86458134232777	29.002	0.19242	29.002	28.904	29.097	0					13	7	2	0	0	0	0.25716	1	9104	9104		70.816	34.499	1	167090			42349	6800	28086	28203	42895	42895					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.7952270507812	2	552.793455	1103.57236	1.3203	0.00072983	-1.6387	-0.00090587	-0.31846	-0.00017604	553.2936193423385	29.032	0.10574	29.032	28.939	29.044	0					8	4	2	0	0	0	0.28897	1	9108	9108		51.193	17.02	1	38872			42350	6800	28086	28203	42896	42896					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7931518554688	2	552.793455	1103.57236	1.8229	0.0010077	-1.8503	-0.0010228	-0.027449	-1.5174E-05	552.791902896774	29.248	0.28809	29.248	29.129	29.418	0					10	7	2	0	0	0	0.21263	1	10436	10436		60.118	14.146	1	194680			42351	6800	28086	28203	42897	42897					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8646240234375	3	368.864729	1103.57236	0.46984	0.00017331	-0.48351	-0.00017835	-0.013678	-5.0451E-06	368.86452445681226	29.281	0.45628	29.281	29.157	29.614	0					21	11	3	0	0	0	0.030949	1	10425	10425		136.27	76.15	1	1376800			42352	6800	28086	28203	42898	42898					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.794189453125	2	552.793455	1103.57236	0.61957	0.00034249	1.4361	0.00079387	2.0557	0.0011364	552.7937499792496	29.275	0.20677	29.275	29.157	29.364	0					17	5	4	0	0	0	0.023928	1	10429	10429		115.49	64.159	1	518250			42353	6800	28086	28203	42899	42899					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7931518554688	2	552.793455	1103.57236	0.22625	0.00012507	0.63166	0.00034918	0.85791	0.00047425	552.7936839287594	29.027	0.12658	29.027	28.936	29.063	0					9	5	2	0	0	0	0.10915	1	9408	9408		77.318	29.358	1	90631			42354	6800	28086	28203	42900	42900					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7938842773438	2	552.793455	1103.57236	1.5926	0.00088041	-1.1947	-0.00066044	0.39792	0.00021997	552.7928678885854	29.244	0.18811	29.244	29.146	29.334	0					8	4	2	0	0	0	0.07136	1	10818	10818		87.696	38.255	1	775240			42355	6800	28086	28203	42901	42901					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8647155761719	3	368.864729	1103.57236	0.4761	0.00017562	-0.54461	-0.00020089	-0.06851	-2.5271E-05	368.8645400193537	29.274	0.32676	29.274	29.179	29.506	0					22	7	4	0	0	0	0.047412	1	10809	10809		124.08	49.037	1	1870800			42356	6800	28086	28203	42902	42902					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.7933959960938	2	552.793455	1103.57236	1.1438	0.00063231	-0.95371	-0.0005272	0.19013	0.0001051	552.792986099984	29.077	0.15341	29.077	28.967	29.12	0					6	4	2	0	0	0	0.17854	1	9737	9737		64.207	36.325	1	66517			42357	6800	28086	28203	42903	42903					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.793701171875	2	552.793455	1103.57236	1.8182	0.0010051	-1.5277	-0.00084449	0.2905	0.00016059	552.7924307107797	29.198	0.26597	29.198	28.992	29.258	0					8	5	2	0	0	0	0.07136	1	10679	10679		87.696	30.975	1	1086500			42358	6800	28086	28203	42904	42904					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7941284179688	2	552.793455	1103.57236	3.654	0.0020199	-2.5447	-0.0014067	1.1093	0.00061323	552.7919139339175	29.187	0.4092	29.187	29.076	29.485	0					18	8	4	0	0	0	0.016683	1	10671	10671		127.46	61.032	1	1300500			42359	6800	28086	28203	42905	42905					0.024713597034860868
TEHMTRTL	8	Unmodified	_TEHMTRTL_					0	0	0		nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	nc|ENSG00000129351|Q12906-4|ILF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7481384277344	2	494.747659	987.480765	0.52536	0.00025992	0.1004	4.9673E-05	0.62576	0.00030959	494.74785856280994	20.218	0.10073	20.218	20.125	20.226	0					4	2	2	0	0	0	0.37144	1	6224	6224		74.255	22.92	1	103560			42360	3594	28087	28204	42906	42906					-0.013476469853458184
TEHPSPSPL	9	Unmodified	_TEHPSPSPL_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.7401428222656	2	482.740357	963.46616	-0.1298	-6.266E-05	0.76374	0.00036869	0.63394	0.00030603	482.74144958574243	24.923	0.46138	24.923	24.687	25.148	0					26	11	3	0	0	0	0.16002	1	8468	8468		66.429	6.311	1	359840			42361	11451	28088	28205	42907	42907					-0.017033958618526412
TEHVKTKPL	9	Unmodified	_TEHVKTKPL_					0	0	0		CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant;ENSG00000186714|ENST00000335185|CCDC73	CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant	CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.5414733886719	3	351.541475	1051.60259	0.50767	0.00017847	-0.51528	-0.00018114	-0.007615	-2.677E-06	351.54124502700114	29.843	0.21539	29.843	29.734	29.949	0					6	4	2	0	0	0	0.2873	1	11105	11105		51.335	1.8939	1	167630			42362	413	28089	28206	42908	42908					0.07885718368675043
TEHYDIPKV	9	Unmodified	_TEHYDIPKV_					0	0	0		ENSG00000105058|ENST00000263384|FAM32A;nc|ENSG00000105058|Q9Y421-3|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	ENSG00000105058|ENST00000263384|FAM32A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2824096679688	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.299	1	31.299	30.799	31.799	0								0	0	0	0.1633	1	11789	11789		56.721	0.28726	1				42363	2327	28090	28207	42909	42909					0.003971352350617963
TEIDEPLSL	9	Unmodified	_TEIDEPLSL_					0	0	0			REV__HSPG2|p.Q407Pfs*62|1|0.23|ENSG00000142798|chr1:21885148-21885149|-/G|frameshift_variant	REV__HSPG2|p.Q407Pfs*62|1|0.23|ENSG00000142798|chr1:21885148-21885149|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.76141357421875	2	508.760955	1015.50736	0.14235	7.2424E-05	0.96101	0.00048893	1.1034	0.00056135	508.76129760870464	23.097	0.10312	23.097	23.033	23.136	0					4	2	2	0	0	0	0.51817	1	7002	7002		30.504	4.9296	1	44676	+		42364	15160	28091	28208	42910	42910					0.0002232038694955918
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.7742614746094	2	509.774396	1017.53424	-0.11124	-5.6707E-05	-0.23762	-0.00012113	-0.34886	-0.00017784	509.7742462505108	26.325	0.20776	26.325	26.213	26.421	0					13	6	3	0	0	0	0.021961	1	7976	7976		118.74	28.373	1	322010			42365	3200	28092	28209	42911	42911					0.026174289981327092
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.77435302734375	2	509.774396	1017.53424	-0.013565	-6.9152E-06	-0.37427	-0.00019079	-0.38784	-0.00019771	509.7741174918392	26.572	0.32019	26.572	26.44	26.76	0					18	7	4	0	0	0	0.010494	1	9169	9169		139.97	38.37	1	2028300			42366	3200	28092	28209	42912	42912					0.026174289981327092
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7740173339844	2	509.774396	1017.53424	1.1832	0.00060319	-1.5348	-0.0007824	-0.35155	-0.00017921	509.77377268898096	26.579	0.61873	26.579	26.359	26.978	0					22	11	4	0	0	0	0.035062	1	9535	9535		104.06	24.344	1	1173300			42367	3200	28092	28209	42913	42913					0.026174289981327092
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7744445800781	2	509.774396	1017.53424	-0.41222	-0.00021014	-0.0021804	-1.1115E-06	-0.4144	-0.00021125	509.77417548399285	26.573	0.21696	26.573	26.493	26.71	0					6	4	2	0	0	0	0.15163	1	9532	9532		67.494	7.3754	1	195540			42368	3200	28092	28209	42914	42914					0.026174289981327092
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7744140625	2	509.774396	1017.53424	-1.8328	-0.00093433	2.0082	0.0010237	0.17537	8.9399E-05	509.7752652357923	26.381	0.23281	26.381	26.276	26.509	0					13	5	3	0	0	0	0.0049871	1	8491	8491		158.07	39.332	1	422940			42369	3200	28092	28209	42915	42915					0.026174289981327092
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7907409667969	2	508.790381	1015.56621	0.95139	0.00048406	-0.92991	-0.00047313	0.021481	1.0929E-05	508.78998849176395	19.641	0.11581	19.641	19.566	19.682	0					5	3	2	0	0	0	0.017421	1	5113	5113		110.12	13.929	1	455280			42370	4854	28093	28210	42916	42916					0.059048414719427456
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.79058837890625	2	508.790381	1015.56621	0.91603	0.00046607	-0.64265	-0.00032697	0.27338	0.00013909	508.79010745923233	19.98	0.29511	19.98	19.869	20.164	0					12	6	3	0	0	0	0.0055674	1	6132	6132		127.46	37.092	1	4327400			42371	4854	28093	28210	42917	42917					0.059048414719427456
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7902526855469	2	508.790381	1015.56621	-0.54121	-0.00027536	0.9841	0.0005007	0.44289	0.00022534	508.79097815100647	19.66	0.11612	19.66	19.62	19.737	0					9	4	3	0	0	0	0.0088974	1	5367	5367		127.46	17.342	1	330660			42372	4854	28093	28210	42918	42918					0.059048414719427456
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7901916503906	2	508.790381	1015.56621	1.1546	0.00058747	-1.1229	-0.00057132	0.031753	1.6156E-05	508.78969041678283	19.868	0.27077	19.868	19.758	20.028	0					13	5	4	0	0	0	0.0071744	1	6341	6341		120.87	13.861	1	2209000			42373	4854	28093	28210	42919	42919					0.059048414719427456
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.791015625	2	508.790381	1015.56621	0.55484	0.0002823	1.335	0.00067923	1.8898	0.00096153	508.7909146871488	19.723	0.10105	19.723	19.63	19.731	0					6	2	3	0	0	0	0.021015	1	5403	5403		93.143	23.516	1	184820			42374	4854	28093	28210	42920	42920					0.059048414719427456
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.79034423828125	2	508.790381	1015.56621	0.15402	7.8366E-05	0.37192	0.00018923	0.52594	0.00026759	508.79043764365343	19.709	0.097143	19.709	19.658	19.755	0					6	2	3	0	0	0	0.02429	1	5413	5413		98.629	5.4339	1	542890			42375	4854	28093	28210	42921	42921					0.059048414719427456
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.79034423828125	2	508.790381	1015.56621	-0.070976	-3.6112E-05	0.084447	4.2966E-05	0.013471	6.8539E-06	508.79045016731504	19.85	0.22008	19.85	19.791	20.011	0					11	4	4	0	0	0	0.0021879	1	6217	6217		145.16	22.98	1	1833300			42376	4854	28093	28210	42922	42922					0.059048414719427456
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7901916503906	2	508.790381	1015.56621	1.3297	0.00067653	-1.4202	-0.0007226	-0.090561	-4.6076E-05	508.7896238538696	19.885	0.26988	19.885	19.774	20.044	0					15	5	4	0	0	0	0.0034376	1	6212	6212		126.24	24.99	1	3865900			42377	4854	28093	28210	42923	42923					0.059048414719427456
TEIGPRMTL	9	Unmodified	_TEIGPRMTL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.27349853515625	2	509.273509	1016.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.674	1	37.674	37.174	38.174	0								0	0	0	0.14033	1	14749	14749		62.107	5.3864	1				42378	3674	28094	28211	42924	42924					0.024860967085373886
TEIGRVIQV	9	Unmodified	_TEIGRVIQV_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8009338378906	2	507.800749	1013.58694	1.126	0.00057178	-1.8584	-0.00094368	-0.73239	-0.00037191	507.80018739745276	37.163	0.27697	37.163	37.058	37.335	0					15	8	3	0	0	0	0.28897	1	14508	14508		51.193	3.2332	1	377960			42379	2659	28095	28212	42925	42925					0.08069431851617992
TEIGRVIQV	9	Unmodified	_TEIGRVIQV_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.8009033203125	2	507.800749	1013.58694	1.3008	0.00066054	-1.636	-0.00083076	-0.33522	-0.00017022	507.80013356740534	37.111	0.25987	37.111	37.008	37.268	0					8	5	3	0	0	0	0.15163	1	14470	14470		67.494	19.578	1	491860			42380	2659	28095	28212	42926	42926					0.08069431851617992
TEIIRQQGL	9	Unmodified	_TEIIRQQGL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.3034057617188	2	529.303655	1056.59276	0.48547	0.00025696	-0.63681	-0.00033707	-0.15134	-8.0106E-05	529.3033091662103	30.312	0.10083	30.312	30.251	30.352	0					5	3	2	0	0	0	0.10915	1	9657	9657		77.318	17.199	1	47053			42381	6707	28096	28213	42927	42927					0.0667253036326656
TEIIRQQGL	9	Unmodified	_TEIIRQQGL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.303955078125	2	529.303655	1056.59276	0.088316	4.6746E-05	0.67033	0.00035481	0.75865	0.00040155	529.3036519947993	30.39	0.17421	30.39	30.278	30.452	0					7	5	2	0	0	0	0.17854	1	9971	9971		64.207	3.2353	1	126950			42382	6707	28096	28213	42928	42928					0.0667253036326656
TEIIRQQGL	9	Unmodified	_TEIIRQQGL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.3038940429688	2	529.303655	1056.59276	1.7389	0.0009204	-1.3767	-0.00072868	0.36222	0.00019172	529.3026844701029	30.593	0.28516	30.593	30.496	30.782	0					11	6	3	0	0	0	0.078509	1	11466	11466		85.161	28.44	1	810750			42383	6707	28096	28213	42929	42929					0.0667253036326656
TEIKKTEVL	9	Unmodified	_TEIKKTEVL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.8169555664062	2	530.816064	1059.61758	0.41446	0.00022	0.50348	0.00026725	0.91794	0.00048725	530.8162670014353	23.248	0.12505	23.248	23.173	23.298	0					6	3	2	0	0	0	0.25761	1	6691	6691		54.722	1.6334	1	80520			42384	6575	28097	28214	42930	42930					0.09015165445998718
TEIKKTEVL	9	Unmodified	_TEIKKTEVL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.8163452148438	2	530.816064	1059.61758	0.11808	6.2681E-05	0.39566	0.00021003	0.51375	0.00027271	530.8163019249685	23.596	0.17387	23.596	23.473	23.647	0					10	4	3	0	0	0	0.10506	1	7825	7825		78.264	4.0087	1	535120			42385	6575	28097	28214	42931	42931					0.09015165445998718
TEILKQTL	8	Unmodified	_TEILKQTL_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.28424072265625	2	473.2844	944.554247	0.24788	0.00011732	-2.3963	-0.0011341	-2.1484	-0.0010168	473.2829906346069	36.422	0.36193	36.422	36.323	36.685	0					22	10	3	0	0	0	0.44767	1	13730	13730		65.465	0	1	766380	+		42386	13421	28098	28215	42932	42932					0.07975224728750163
TEILKQTL	8	Unmodified	_TEILKQTL_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2842102050781	2	473.2844	944.554247	-1.5421	-0.00072985	1.4244	0.00067415	-0.11768	-5.5697E-05	473.2850374421692	36.223	0.10897	36.223	36.156	36.265	0					8	5	2	0	0	0	0.41701	1	12264	12264		68.787	0	1	46682	+		42387	13421	28098	28215	42933	42933					0.07975224728750163
TEILKQTL	8	Unmodified	_TEILKQTL_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2839660644531	2	473.2844	944.554247	0.59649	0.00028231	-3.9164	-0.0018536	-3.3199	-0.0015712	473.28194082187855	36.391	0.43285	36.391	36.316	36.748	0					17	12	2	0	0	0	0.29212	1	14177	14177		85.161	0	1	488810	+		42388	13421	28098	28215	42934	42934					0.07975224728750163
TEILRVGNI	9	Unmodified	_TEILRVGNI_					0	0	0		nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4;KCNC4|p.S268R|1|0.22|ENSG00000116396|chr1:110223089-110223089|C/A|missense_variant	nc|ENSG00000116396|Q03721-2|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.80059814453125	2	507.800749	1013.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.915	1	36.915	36.415	37.415	0								0	0	0	0.30504	1	13214	13214		34.173	8.7224	1				42389	2980	28099	28216	42935	42935					0.08069431851606623
TEIPTKITI	9	Unmodified	_TEIPTKITI_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.3057556152344	2	508.305332	1014.59611	0.90266	0.00045883	-0.56536	-0.00028738	0.33729	0.00017145	508.30501215298534	40.043	0.15031	40.043	39.964	40.115	0					12	5	3	0	0	0	0.19605	1	15256	15256		62.107	10.915	1	84661			42390	3298	28100	28217	42936	42936					0.08939780417267684
TEIPVRAL	8	Unmodified	_TEIPVRAL_					0	0	0		nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000506931.1_1_1:202245458-202249981:+|nuORF;ENST00000308543.3_1_1:202245458-202272411:+|nuORF	nc|ENSG00000133067|Q9HBX8-2|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.77154541015625	2	449.77146	897.528367	0.15782	7.0981E-05	-0.32988	-0.00014837	-0.17206	-7.7388E-05	449.77117699771827	34.948	0.16331	34.948	34.859	35.022	0					9	4	3	0	0	0	0.43813	1	13048	13048		66.429	10.925	1	146620			42391	3834	28101	28218	42937	42937					0.07550375277128296
TEIPVRAL	8	Unmodified	_TEIPVRAL_					0	0	0		nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000506931.1_1_1:202245458-202249981:+|nuORF;ENST00000308543.3_1_1:202245458-202272411:+|nuORF	nc|ENSG00000133067|Q9HBX8-2|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.77166748046875	2	449.77146	897.528367	-0.39848	-0.00017923	0.15539	6.9889E-05	-0.24309	-0.00010934	449.7715730376149	34.877	0.26456	34.877	34.734	34.998	0					8	5	2	0	0	0	0.51384	1	13403	13403		58.782	5.4305	1	260770			42392	3834	28101	28218	42938	42938					0.07550375277128296
TEIQPHGGA	9	Unmodified	_TEIQPHGGA_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2221374511719	2	455.224874	908.435195	-0.58282	-0.00026531	-4.0958	-0.0018645	-4.6786	-0.0021298	455.22248234231853	12.657	0.090922	12.657	12.595	12.686	0					9	3	3	0	0	0	0.5654	1	2717	2717		25.45	2.4077	1	395560			42393	5591	28102	28219	42939	42939					-0.022685491760853438
TEIQQQSAL	9	Unmodified	_TEIQQQSAL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2645263671875	2	509.264196	1016.51384	-0.50601	-0.00025769	-0.77229	-0.0003933	-1.2783	-0.000651	509.26468235916496	30.628	0.18882	30.628	30.561	30.749	0					18	7	3	0	0	0	0.21419	1	10082	10082		59.931	5.1545	1	134970			42394	6926	28103	28220	42940	42940					0.006242583383254896
TEIQQQSAL	9	Unmodified	_TEIQQQSAL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2642517089844	2	509.264196	1016.51384	-1.8488	-0.00094153	0.27395	0.00013951	-1.5749	-0.00080202	509.2652189237859	30.653	0.27024	30.653	30.494	30.764	0					17	7	4	0	0	0	0.090954	1	10468	10468		81.525	19.418	1	191740			42395	6926	28103	28220	42941	42941					0.006242583383254896
TEIQQQSAL	9	Unmodified	_TEIQQQSAL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.26422119140625	2	509.264196	1016.51384	1.348	0.00068651	-2.2067	-0.0011238	-0.85869	-0.0004373	509.26352484690403	30.853	0.26437	30.853	30.714	30.978	0					16	5	5	0	0	0	0.11411	1	11469	11469		76.17	14.478	1	379680			42396	6926	28103	28220	42942	42942					0.006242583383254896
TEIRMARM	8	Unmodified	_TEIRMARM_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000430239.1_1_6:30664985-30665288:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2596740722656	2	504.259879	1006.50521	0.099496	5.0172E-05	-0.12828	-6.4688E-05	-0.028787	-1.4516E-05	504.25971054796884	25.554	0.40794	25.554	25.409	25.817	0					19	7	4	0	0	0	0.59773	1	9073	9073		38.806	5.9937	1	642780			42397	4790	28104	28221	42943	42943					0.002212898965126442
TEIRSQQQQL	10	Unmodified	_TEIRSQQQQL_					0	0	0		nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;nc|ENSG00000138750|Q7Z3B4-2|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	615.8261108398438	2	615.825483	1229.63641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.366	1	23.366	22.866	23.866	0								0	0	0	0.23484	1	8041	8041		59.931	1.1488	1				42398	4283	28105	28222	42944	42944					0.030780950697590015
TEIRTGRF	8	Unmodified	_TEIRTGRF_					0	0	0			REV__ENST00000549982.5_1_12:93861271-93862986:+|nuORF	REV__ENST00000549982.5_1_12:93861271-93862986:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2685546875	2	490.269616	978.524678	-2.7898	-0.0013677	0.79167	0.00038813	-1.9981	-0.0009796	490.26999912542044	25.902	0.23158	25.902	25.767	25.998	0					7	3	3	0	0	0	0.54629	1	8265	8265		55.504	0	1	708620	+		42399	20188	28106	28223	42945	42945					0.03455705503290574
TEISGLTPGK	10	Unmodified	_TEISGLTPGK_					0	0	0			REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7767028808594	2	501.776939	1001.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.571	1	35.571	35.071	36.071	0								0	0	0	0.28704	1	13743	13743		52.937	2.9122	1		+		42400	15733	28107	28224	42946	42946					0.038617328607642776
TEISSAEKV	9	Unmodified	_TEISSAEKV_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2530212402344	2	482.253297	962.492041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.16	1	24.16	23.66	24.66	0								0	0	0	0.13425	1	7490	7490		63.534	11.235	1				42401	1224	28108	28225	42947	42947					0.009294535897652167
TEISSAEKVAL	11	Unmodified	_TEISSAEKVAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.3141479492188	2	574.313886	1146.61322	-0.16957	-9.7388E-05	0.48748	0.00027997	0.31791	0.00018258	574.3139916611268	34.757	0.19606	34.757	34.635	34.832	0					11	5	3	0	0	0	0.36734	1	13428	13428		55.084	10.062	1	191270			42402	1224	28109	28226	42948	42948					0.04577656232436311
TEISTKEV	8	Unmodified	_TEISTKEV_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.74237060546875	2	453.742565	905.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.719	1	23.719	23.219	24.219	0								0	0	0	1.7419	1	7164	7164		71.877	10.906	1				42403	1630;9658	28110	28227	42949	42949					0.014060685610502333
TEISTKEV	8	Unmodified	_TEISTKEV_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7418212890625	2	453.742565	905.470577	-2.6224	-0.0011899	1.7272	0.00078372	-0.89517	-0.00040618	453.74328572611813	23.743	0.1287	23.743	23.665	23.794	0					5	3	2	0	0	0	0.3049	1	7306	7306		82.241	5.4664	1	128660			42404	1630;9658	28110	28227	42950	42950					0.014060685610502333
TEISYSTAIF	10	Unmodified	_TEISYSTAIF_					0	0	0			REV__NPY4R|p.V45A|1|0.15|ENSG00000204174|chr10:46462502-46462502|A/G|missense_variant	REV__NPY4R|p.V45A|1|0.15|ENSG00000204174|chr10:46462502-46462502|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.2827758789062	2	566.282054	1130.54956	0.23144	0.00013106	0.44765	0.00025349	0.67909	0.00038456	566.2820653284728	39.954	0.1168	39.954	39.875	39.992	0					6	4	2	0	0	0	0.57532	1	15723	15723		37.159	4.3467	1	91060	+		42405	21306	28111	28228	42951	42951					-0.010497042046836214
TEIVMPTPK	9	Oxidation (M)	_TEIVM(Oxidation (M))PTPK_		TEIVM(1)PTPK		TEIVM(53)PTPK	0	0	1		IGSF1|p.H803Tfs*4|1|0.66|ENSG00000147255|chrX:131277140-131277140|G/-|frameshift_variant;nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	IGSF1|p.H803Tfs*4|1|0.66|ENSG00000147255|chrX:131277140-131277140|G/-|frameshift_variant	IGSF1|p.H803Tfs*4|1|0.66|ENSG00000147255|chrX:131277140-131277140|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2783813476562	2	516.275718	1030.53688	0.26827	0.0001385	3.5138	0.0018141	3.782	0.0019526	516.2782914494506	23.166	0.12103	23.166	23.1	23.221	0					5	3	2	0	0	0	0.27249	1	6659	6659		52.937	6.9645	1	45118			42406	4773	28112	28229	42952	42952		196			0.022835611314576454
TEKAAANKTI	10	Unmodified	_TEKAAANKTI_					0	0	0		ENST00000592005.5_1_18:44497642-44497873:+|nuORF	ENST00000592005.5_1_18:44497642-44497873:+|nuORF	ENST00000592005.5_1_18:44497642-44497873:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.7974853515625	2	523.795663	1045.57677	3.4236	0.0017933	0.79687	0.0004174	4.2205	0.0022107	523.7958933607912	38.063	0.42995	38.063	37.92	38.35	0					28	9	5	0	0	0	0.31894	1	14919	14919		65.157	12.221	1	5084100			42407	10969	28113	28230	42953	42953					0.055808241263775926
TEKAEHSEL	9	Unmodified	_TEKAEHSEL_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2542114257812	2	522.253828	1042.4931	1.5968	0.00083391	-0.66579	-0.00034771	0.93096	0.0004862	522.2535034447665	16.496	0.13967	16.496	16.407	16.546	0					5	3	2	0	0	0	0.25761	1	4497	4497		54.722	8.2656	1	362070			42408	2323	28114	28231	42954	42954					-0.026443320413363836
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.3085327148438	2	552.306395	1102.59824	1.4657	0.00080953	-0.8954	-0.00049453	0.57032	0.00031499	552.3059686857056	15.031	0.075339	15.031	14.983	15.059	0					5	3	2	0	0	0	0.14578	1	3192	3192		68.846	17.653	1	90148			42409	4890	28115	28232	42955	42955					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3065185546875	2	552.306395	1102.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.346	1	15.346	14.846	15.846	0								0	0	0	0.17415	1	3943	3943		54.722	8.2656	1				42410	4890	28115	28232	42956	42956					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.306640625	2	552.306395	1102.59824	0.24244	0.0001339	1.4796	0.00081718	1.722	0.00095108	552.3071462872831	15.074	0.087896	15.074	15.033	15.121	0					10	4	3	0	0	0	0.082776	1	3365	3365		83.647	21.54	1	159980			42411	4890	28115	28232	42957	42957					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.54022216796875	3	368.540022	1102.59824	-1.0046	-0.00037022	1.0382	0.00038261	0.033602	1.2384E-05	368.54042060571516	15.074	0.087896	15.074	15.033	15.121	0					7	4	2	0	0	0	0.54081	1	3374	3374		42.338	15.645	1	68276			42412	4890	28115	28232	42958	42958					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3067626953125	2	552.306395	1102.59824	1.6024	0.00088499	-0.94777	-0.00052346	0.65459	0.00036153	552.3060085790631	15.324	0.30686	15.324	15.227	15.534	0					13	6	4	0	0	0	0.0055674	1	4156	4156		155.58	59.769	1	939700			42413	4890	28115	28232	42959	42959					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.3080444335938	2	552.306395	1102.59824	1.1456	0.00063275	0.72368	0.00039969	1.8693	0.0010324	552.3069716693487	15.133	0.07153	15.133	15.094	15.166	0					8	3	3	0	0	0	0.12278	1	3328	3328		74.165	12.474	1	146340			42414	4890	28115	28232	42960	42960					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.3087768554688	2	552.306395	1102.59824	-1.275	-0.00070421	2.7933	0.0015428	1.5183	0.00083854	552.3084700751607	15.126	0.093294	15.126	15.089	15.182	0					9	4	3	0	0	0	0.14578	1	3325	3325		68.846	10.616	1	115710			42415	4890	28115	28232	42961	42961					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3067016601562	2	552.306395	1102.59824	0.78025	0.00043094	-0.2954	-0.00016315	0.48485	0.00026779	552.3062757194444	15.272	0.16843	15.272	15.162	15.33	0					5	3	2	0	0	0	0.082776	1	3999	3999		83.647	18.182	1	953240			42416	4890	28115	28232	42962	42962					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3068237304688	2	552.306395	1102.59824	1.8179	0.001004	-1.0322	-0.00057007	0.78571	0.00043395	552.3057748207725	15.255	0.16877	15.255	15.195	15.364	0					7	3	3	0	0	0	0.017741	1	3990	3990		125.71	40.552	1	1788700			42417	4890	28115	28232	42963	42963					0.05104209155092576
TEKAKEERL	9	Unmodified	_TEKAKEERL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP;INCENP|p.E620D|1|0.06|ENSG00000149503|chr11:62145652-62145652|G/T|missense_variant	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.5400695800781	3	368.540022	1102.59824	0.9167	0.00033784	-0.8504	-0.00031341	0.066296	2.4433E-05	368.5396873726102	15.255	0.21873	15.255	15.195	15.414	0					5	4	2	0	0	0	0.44593	1	3992	3992		45.022	19.896	1	1127900			42418	4890	28115	28232	42964	42964					0.05104209155092576
TEKECLSF	8	Unmodified	_TEKECLSF_					0	0	0			REV__nc|ENSG00000187098|O75030-6|MITF	REV__nc|ENSG00000187098|O75030-6|MITF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.6922302246094	2	478.723318	955.432083	-0.26578	-0.00012724	2.8596	0.001369	2.5938	0.0012417	478.7247250077108	40.584	0.13694	40.584	40.53	40.667	0					7	5	2	0	0	0	0.72381	1	15502	15502		30.504	1.3541	1	37875	+		42419	21162	28116	28233	42965	42965					-0.04741560345109974
TEKEGKDQEL	10	Unmodified	_TEKEGKDQEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;NUMA1|p.A1067S|1|0.25|ENSG00000137497|chr11:72014304-72014304|C/A|missense_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	588.7911987304688	2	588.790775	1175.567	0.1725	0.00010157	0.22647	0.00013334	0.39897	0.00023491	588.79100879646	16.125	0.085003	16.125	16.072	16.157	0					5	3	2	0	0	0	0.38179	1	3624	3624		58.246	1.8125	1	86171			42420	4171	28117	28234	42966	42966					-0.013764086696710365
TEKEGKDQEL	10	Unmodified	_TEKEGKDQEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;NUMA1|p.A1067S|1|0.25|ENSG00000137497|chr11:72014304-72014304|C/A|missense_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.7908325195312	2	588.790775	1175.567	0.1644	9.6795E-05	0.12087	7.1168E-05	0.28527	0.00016796	588.7909172382281	16.399	0.2316	16.399	16.303	16.534	0					12	5	4	0	0	0	0.06456	1	4447	4447		104.42	37.994	1	720570			42421	4171	28117	28234	42967	42967					-0.013764086696710365
TEKEGKDQEL	10	Unmodified	_TEKEGKDQEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;NUMA1|p.A1067S|1|0.25|ENSG00000137497|chr11:72014304-72014304|C/A|missense_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	588.7905883789062	2	588.790775	1175.567	-0.41949	-0.00024699	0.32066	0.0001888	-0.098827	-5.8189E-05	588.7909903623745	16.134	0.096815	16.134	16.069	16.166	0					12	3	4	0	0	0	0.080628	1	3800	3800		99.013	21.695	1	321530			42422	4171	28117	28234	42968	42968					-0.013764086696710365
TEKEGKDQEL	10	Unmodified	_TEKEGKDQEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;NUMA1|p.A1067S|1|0.25|ENSG00000137497|chr11:72014304-72014304|C/A|missense_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.7909545898438	2	588.790775	1175.567	1.4637	0.00086179	-2.01	-0.0011835	-0.54635	-0.00032169	588.7896418109965	16.372	0.31608	16.372	16.263	16.58	0					19	6	4	0	0	0	0.011557	1	4676	4676		136.99	32.932	1	2611000			42423	4171	28117	28234	42969	42969					-0.013764086696710365
TEKEGKDQEL	10	Unmodified	_TEKEGKDQEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;NUMA1|p.A1067S|1|0.25|ENSG00000137497|chr11:72014304-72014304|C/A|missense_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.7909545898438	2	588.790775	1175.567	0.53122	0.00031277	-0.9419	-0.00055458	-0.41069	-0.00024181	588.7903334634899	16.158	0.26071	16.158	16.124	16.385	0					9	7	2	0	0	0	0.034592	1	3782	3782		114.86	42.981	1	195250			42424	4171	28117	28234	42970	42970					-0.013764086696710365
TEKEGKDQEL	10	Unmodified	_TEKEGKDQEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;NUMA1|p.A1067S|1|0.25|ENSG00000137497|chr11:72014304-72014304|C/A|missense_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7910766601562	2	588.790775	1175.567	1.3576	0.00079936	-1.422	-0.00083725	-0.064352	-3.789E-05	588.7898259544721	16.392	0.31672	16.392	16.283	16.6	0					17	6	4	0	0	0	0.0013826	1	4516	4516		178.55	49.126	1	1155700			42425	4171	28117	28234	42971	42971					-0.013764086696710365
TEKEGKDQEL	10	Unmodified	_TEKEGKDQEL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;NUMA1|p.A1067S|1|0.25|ENSG00000137497|chr11:72014304-72014304|C/A|missense_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7908935546875	2	588.790775	1175.567	3.1856	0.0018757	-3.5023	-0.0020621	-0.31671	-0.00018647	588.7886488176813	16.375	0.36721	16.375	16.267	16.634	0					13	7	2	0	0	0	8.9069E-05	1	4530	4530		191.45	75.955	1	2041600			42426	4171	28117	28234	42972	42972					-0.013764086696710365
TEKELYEAL	9	Unmodified	_TEKELYEAL_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2838745117188	2	548.282054	1094.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.955	1	37.955	37.455	38.455	0								0	0	0	0.18645	1	12401	12401		52.937	6.9645	1				42427	6503	28118	28235	42973	42973					0.006062957953190562
TEKELYEAL	9	Unmodified	_TEKELYEAL_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2830810546875	2	548.282054	1094.54956	0.48681	0.00026691	1.3581	0.00074464	1.8449	0.0010115	548.2823549201729	38.258	0.21664	38.258	38.174	38.391	0					16	8	3	0	0	0	0.25761	1	14524	14524		54.722	10.191	1	200810			42428	6503	28118	28235	42974	42974					0.006062957953190562
TEKEVERIL	9	Unmodified	_TEKEVERIL_					0	0	0		nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENSG00000107672|ENST00000369023|NSMCE4A;ENST00000483541.1_1_10:123719867-123724812:-|nuORF	nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.31689453125	2	558.816596	1115.61864	-0.13209	-7.3813E-05	-0.8859	-0.00049505	-1.018	-0.00056887	558.8171196422945	28.357	0.30656	28.357	28.258	28.565	0					9	6	2	0	0	0	0.36892	1	10371	10371		44.377	1.981	1	123830			42429	2491	28119	28236	42975	42975					0.06545379814906482
TEKGKDVEL	9	Unmodified	_TEKGKDVEL_					0	0	0		nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2;nc|ENSG00000211714|A0A075B6L6|TRBV7-3	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.77435302734375	2	509.774396	1017.53424	1.0165	0.00051817	0.91766	0.0004678	1.9341	0.00098597	509.7747399950073	19.434	0.16798	19.434	19.368	19.535	0					9	5	2	0	0	0	0.19605	1	5023	5023		62.107	6.6032	1	196770			42430	11737	28120	28237	42976	42976					0.026174289981327092
TEKGKDVEL	9	Unmodified	_TEKGKDVEL_					0	0	0		nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2;nc|ENSG00000211714|A0A075B6L6|TRBV7-3	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.7743225097656	2	509.774396	1017.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.774	1	19.774	19.274	20.274	0								0	0	0	0.051298	1	6026	6026		85.862	5.9226	1				42431	11737	28120	28237	42977	42977					0.026174289981327092
TEKGKDVEL	9	Unmodified	_TEKGKDVEL_					0	0	0		nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2;nc|ENSG00000211714|A0A075B6L6|TRBV7-3	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7740173339844	2	509.774396	1017.53424	0.2712	0.00013825	-0.21751	-0.00011088	0.053686	2.7368E-05	509.7743069144752	19.684	0.2152	19.684	19.576	19.792	0					11	4	3	0	0	0	0.037924	1	6253	6253		101.25	5.0622	1	1676200			42432	11737	28120	28237	42978	42978					0.026174289981327092
TEKGKDVEL	9	Unmodified	_TEKGKDVEL_					0	0	0		nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2;nc|ENSG00000211714|A0A075B6L6|TRBV7-3	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.77410888671875	2	509.774396	1017.53424	-0.02762	-1.408E-05	-0.21843	-0.00011135	-0.24605	-0.00012543	509.7743131166913	19.648	0.26812	19.648	19.591	19.859	0					11	5	3	0	0	0	0.037924	1	6122	6122		101.25	10.883	1	1335400			42433	11737	28120	28237	42979	42979					0.026174289981327092
TEKGNLEVL	9	Unmodified	_TEKGNLEVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.77691650390625	2	501.776939	1001.53933	2.9239	0.0014672	-2.3266	-0.0011674	0.59739	0.00029976	501.7751818893166	32.598	1.0192	32.598	31.735	32.754	0					23	20	2	0	0	0	0.070005	1	12321	12321		88.177	0.42264	1	928070			42434	2899;6458	28121	28238	42980	42980					0.038617328607642776
TEKGTAINNAN	11	Unmodified	_TEKGTAINNAN_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.19110107421875	3	378.191282	1131.55202	-0.44009	-0.00016644	0.16072	6.0781E-05	-0.27937	-0.00010566	378.19135487473545	19.401	0.16647	19.401	19.293	19.459	0					8	3	3	0	0	0	0.50799	1	6000	6000		43.651	1.2547	1	828770			42435	22858	28122	28239	42981	42981					-0.008498557470147716
TEKHVQVAV	9	Unmodified	_TEKHVQVAV_					0	0	0		nc|ENSG00000145604|Q13309-4|SKP2;nc|ENSG00000145604|Q13309-2|SKP2;ENSG00000145604|ENST00000274255|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7843017578125	2	505.785099	1009.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.517	1	20.517	20.017	21.017	0								0	0	0	0.17378	1	5742	5742		54.776	13.998	1				42436	4678	28123	28240	42982	42982					0.051248588175326404
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2869873046875	2	502.28714	1002.55973	0.50051	0.0002514	-0.66103	-0.00033203	-0.16052	-8.0628E-05	502.2867106169541	35.589	0.23095	35.589	35.497	35.728	0					20	11	2	0	0	0	0.24334	1	11644	11644		56.434	5.2411	1	255120			42437	1514	28124	28241	42983	42983					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2875671386719	2	502.28714	1002.55973	0.71094	0.00035709	-0.85863	-0.00043128	-0.1477	-7.4186E-05	502.28659063160023	35.867	0.39365	35.867	35.751	36.144	0					28	10	4	0	0	0	0.035106	1	13465	13465		104.01	7.98	1	1694800			42438	1514	28124	28241	42984	42984					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2864685058594	2	502.28714	1002.55973	-0.92153	-0.00046287	0.58542	0.00029405	-0.33611	-0.00016882	502.2873957058438	35.642	0.25859	35.642	35.538	35.796	0					27	13	3	0	0	0	0.28897	1	12045	12045		51.193	5.2204	1	414210			42439	1514	28124	28241	42985	42985					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2871398925781	2	502.28714	1002.55973	0.97664	0.00049055	-1.1646	-0.00058498	-0.188	-9.4431E-05	502.28639645739696	35.852	0.41307	35.852	35.706	36.12	0					28	12	4	0	0	0	0.082776	1	13906	13906		83.647	7.4773	1	1851100			42440	1514	28124	28241	42986	42986					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2872619628906	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.643	1	35.643	35.143	36.143	0								0	0	0	0.13425	1	12711	12711		63.534	4.7519	1				42441	1514	28124	28241	42987	42987					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2871398925781	2	502.28714	1002.55973	0.13815	6.9389E-05	-0.40259	-0.00020221	-0.26444	-0.00013283	502.2868514402381	35.625	0.29821	35.625	35.544	35.842	0					24	11	3	0	0	0	0.22837	1	12690	12690		58.23	0.41864	1	398520			42442	1514	28124	28241	42988	42988					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2875061035156	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.627	1	35.627	35.127	36.127	0								0	0	0	0.17415	1	12704	12704		54.722	0	1				42443	1514	28124	28241	42989	42989					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2870788574219	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.81	1	35.81	35.31	36.31	0								0	0	0	0.015103	1	13859	13859		104.01	7.98	1				42444	1514	28124	28241	42990	42990					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2868347167969	2	502.28714	1002.55973	1.1479	0.00057658	-1.1473	-0.00057625	0.00065761	3.3031E-07	502.28646040812407	35.776	0.51261	35.776	35.671	36.183	0					23	10	4	0	0	0	0.021015	1	13830	13830		120.31	13.623	1	2158700			42445	1514	28124	28241	42991	42991					0.05854903520571497
TEKKEIAIL	9	Unmodified	_TEKKEIAIL_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;CCPG1|p.K524Nfs*118|1|0.26|ENSG00000260916|chr15:55360201-55360201|T/-|frameshift_variant;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.8187866210938	2	522.818607	1043.62266	0.44733	0.00023387	0.06653	3.4783E-05	0.51386	0.00026865	522.8186403387392	28.904	0.26547	28.904	28.798	29.063	0					26	10	3	0	0	0	0.095583	1	9345	9345		64.207	16.55	1	843820			42446	419	28125	28242	42992	42992					0.1025946930860755
TEKKEIAIL	9	Unmodified	_TEKKEIAIL_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;CCPG1|p.K524Nfs*118|1|0.26|ENSG00000260916|chr15:55360201-55360201|T/-|frameshift_variant;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.81884765625	2	522.818607	1043.62266	1.0919	0.00057084	-0.69391	-0.00036279	0.39794	0.00020805	522.8182825949744	28.927	0.34455	28.927	28.836	29.181	0					17	9	3	0	0	0	0.076532	1	9657	9657		79.713	26.776	1	572860			42447	419	28125	28242	42993	42993					0.1025946930860755
TEKKEIAIL	9	Unmodified	_TEKKEIAIL_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;CCPG1|p.K524Nfs*118|1|0.26|ENSG00000260916|chr15:55360201-55360201|T/-|frameshift_variant;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.818603515625	2	522.818607	1043.62266	3.4087	0.0017821	-3.052	-0.0015956	0.35669	0.00018649	522.8171061784664	29.091	0.60743	29.091	28.975	29.583	0					30	12	4	0	0	0	0.047855	1	10603	10603		69.628	0.8408	1	4873800			42448	419	28125	28242	42994	42994					0.1025946930860755
TEKKEIAIL	9	Unmodified	_TEKKEIAIL_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;CCPG1|p.K524Nfs*118|1|0.26|ENSG00000260916|chr15:55360201-55360201|T/-|frameshift_variant;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.8812561035156	3	348.881497	1043.62266	3.0335	0.0010583	-4.4725	-0.0015604	-1.4391	-0.00050206	348.8798328202531	29.085	0.46541	29.085	28.975	29.441	0					13	9	2	0	0	0	0.27249	1	10628	10628		52.937	8.8199	1	1499200			42449	419	28125	28242	42995	42995					0.1025946930860755
TEKKIILQG	9	Unmodified	_TEKKIILQG_					0	0	0		ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.3204956054688	2	515.318774	1028.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.417	1	25.417	24.917	25.917	0								0	0	0	0.29774	1	7905	7905		35.618	2.1027	1				42450	8998	28126	28243	42996	42996					0.1098288902846889
TEKKIPVVF	9	Unmodified	_TEKKIPVVF_					0	0	0		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8239135742188	2	530.823692	1059.63283	1.7252	0.00091578	-0.97635	-0.00051827	0.74886	0.00039751	530.8230574670873	33.264	0.3098	33.264	33.138	33.448	0					16	7	3	0	0	0	0.22377	1	12728	12728		58.782	16.307	1	244820			42451	4345	28127	28244	42997	42997					0.10540077033851958
TEKKIPVVF	9	Unmodified	_TEKKIPVVF_					0	0	0		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.8245239257812	2	530.823692	1059.63283	-1.2211	-0.00064818	2.8799	0.0015287	1.6588	0.00088054	530.825020240888	33.087	0.16385	33.087	32.954	33.118	0					8	5	2	0	0	0	0.30951	1	11571	11571		49.442	5.3247	1	52557			42452	4345	28127	28244	42998	42998					0.10540077033851958
TEKKIQVGL	9	Unmodified	_TEKKIQVGL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3108825683594	2	508.310949	1014.60735	1.1403	0.00057963	-1.4889	-0.00075685	-0.34864	-0.00017722	508.31010423499094	25.746	0.24855	25.746	25.636	25.885	0					7	3	3	0	0	0	0.032383	1	9166	9166		90.37	0	1	637570			42453	1208	28128	28245	42999	42999					0.1006260251143658
TEKKIQVGL	9	Unmodified	_TEKKIQVGL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.3109130859375	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.543	1	25.543	25.043	26.043	0								0	0	0	0.14961	1	8137	8137		44.377	12.847	1				42454	1208	28128	28245	43000	43000					0.1006260251143658
TEKKVWNVL	9	Unmodified	_TEKKVWNVL_					0	0	0		ENST00000381222.8_2_X:2405587-2405806:-|nuORF	ENST00000381222.8_2_X:2405587-2405806:-|nuORF	ENST00000381222.8_2_X:2405587-2405806:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.8851318359375	3	372.885241	1115.63389	0.78631	0.0002932	-0.95601	-0.00035648	-0.1697	-6.3279E-05	372.8849323893649	26.087	0.59834	26.087	26	26.598	0					34	14	4	0	0	0	0.4966	1	8968	8968		32.812	2.4947	1	1083500			42455	9109	28129	28246	43001	43001					0.08070291402736984
TEKLMKEKL	9	Unmodified	_TEKLMKEKL_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.88623046875	3	373.886253	1118.63693	0.33624	0.00012572	-1.213	-0.00045352	-0.87676	-0.00032781	373.88608934988736	21.775	0.39036	21.775	21.641	22.031	0					13	9	2	0	0	0	0.41958	1	6979	6979		40.058	4.9061	1	848270			42456	11515	28130	28247	43002	43002					0.08235798465238986
TEKLMKEKL	9	Unmodified	_TEKLMKEKL_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.88604736328125	3	373.886253	1118.63693	3.2279	0.0012069	-3.2518	-0.0012158	-0.023876	-8.927E-06	373.8847954890547	21.713	0.36718	21.713	21.603	21.97	0					11	7	2	0	0	0	0.41958	1	7123	7123		40.058	2.55	1	781520			42457	11515	28130	28247	43003	43003					0.08235798465238986
TEKLVAMTM	9	Unmodified	_TEKLVAMTM_					0	0	0		ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	ENST00000583120.1_1_17:31258522-31263466:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2648315429688	2	512.264296	1022.51404	0.0049836	2.5529E-06	0.94185	0.00048248	0.94684	0.00048503	512.2645015613161	37.099	0.36183	37.099	36.93	37.292	0					18	10	3	0	0	0	0.13726	1	14031	14031		70.816	17.465	1	247380			42458	973	28131	28248	43004	43004					0.0036821874232373375
TEKQESVQL	9	Unmodified	_TEKQESVQL_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2772827148438	2	531.277303	1060.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.776	1	25.776	25.276	26.276	0								0	0	0	0.047883	1	9190	9190		86.882	4.1311	1				42459	3331	28132	28249	43005	43005					0.012205275098040147
TEKQKESTL	9	Unmodified	_TEKQKESTL_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.285400390625	2	532.285128	1062.5557	-0.29078	-0.00015478	1.0407	0.00055397	0.74997	0.0003992	532.2855184101356	14.828	0.11668	14.828	14.745	14.862	0					8	5	3	0	0	0	0.0067848	1	3282	3282		150.36	54.546	1	156430			42460	5033	28133	28250	43006	43006					0.026928140268637435
TEKQKESTL	9	Unmodified	_TEKQKESTL_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2854614257812	2	532.285128	1062.5557	1.7151	0.00091293	-1.1726	-0.00062415	0.54251	0.00028877	532.2844902861016	15.083	0.26872	15.083	14.927	15.196	0					14	5	3	0	0	0	0.02429	1	4064	4064		114.89	29.979	1	1700400			42461	5033	28133	28250	43007	43007					0.026928140268637435
TEKQKESTL	9	Unmodified	_TEKQKESTL_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2860107421875	2	532.285128	1062.5557	1.1536	0.00061407	-0.28171	-0.00014995	0.87193	0.00046412	532.285246860668	14.851	0.12285	14.851	14.794	14.917	0					13	6	3	0	0	0	0.029571	1	3229	3229		109.44	48.467	1	105430			42462	5033	28133	28250	43008	43008					0.026928140268637435
TEKQKESTL	9	Unmodified	_TEKQKESTL_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.28564453125	2	532.285128	1062.5557	-1.2663	-0.00067401	3.1952	0.0017007	1.9289	0.0010267	532.2865178949811	14.862	0.086595	14.862	14.824	14.91	0					7	4	2	0	0	0	0.095583	1	3236	3236		80.455	34.482	1	93483			42463	5033	28133	28250	43009	43009					0.026928140268637435
TEKQKESTL	9	Unmodified	_TEKQKESTL_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.285400390625	2	532.285128	1062.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.072	1	15.072	14.572	15.572	0								0	0	0	0.0016356	1	3894	3894		123.21	23.833	1				42464	5033	28133	28250	43010	43010					0.026928140268637435
TEKQLQVLL	9	Unmodified	_TEKQLQVLL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.3239135742188	2	536.324057	1070.63356	0.1963	0.00010528	0.28956	0.0001553	0.48586	0.00026058	536.323921260184	40.781	0.24922	40.781	40.716	40.965	0					15	7	3	0	0	0	0.098791	1	15538	15538		79.713	12.219	1	284820			42465	3193	28134	28251	43011	43011					0.10106871682887686
TEKQLQVLL	9	Unmodified	_TEKQLQVLL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8262329101562	2	536.324057	1070.63356	-0.48232	-0.00025868	1.868	0.0010018	1.3856	0.00074315	536.3249269575858	40.547	0.13054	40.547	40.464	40.595	0					9	7	2	0	0	0	0.39215	1	13565	13565		42.396	0.96952	1	46855			42466	3193	28134	28251	43012	43012					0.10106871682887686
TEKQLQVLL	9	Unmodified	_TEKQLQVLL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.324462890625	2	536.324057	1070.63356	1.8418	0.00098782	-0.77193	-0.00041401	1.0699	0.00057382	536.3234834941265	40.742	0.16406	40.742	40.645	40.809	0					18	7	3	0	0	0	0.1424	1	16058	16058		69.628	9.5094	1	218510			42467	3193	28134	28251	43013	43013					0.10106871682887686
TEKQSAAAL	9	Unmodified	_TEKQSAAAL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.74786376953125	2	459.748182	917.481811	-0.91428	-0.00042034	-0.088658	-4.076E-05	-1.0029	-0.0004611	459.7480994115874	19.317	0.14756	19.317	19.243	19.39	0					9	4	3	0	0	0	0.24334	1	5217	5217		56.434	12.317	1	256490			42468	1603	28135	28252	43014	43014					0.01976890655180341
TEKQYIATI	9	Unmodified	_TEKQYIATI_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7923583984375	2	533.792589	1065.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.786	1	32.786	32.286	33.286	0								0	0	0	0.16453	1	10621	10621		56.434	12.317	1				42469	5131	28136	28253	43015	43015					0.04046305894848956
TEKRSTVAC	9	Unmodified	_TEKRSTVAC_					0	0	0		ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.75286865234375	2	497.752941	993.491329	-0.28466	-0.00014169	-0.096349	-4.7958E-05	-0.38101	-0.00018965	497.75293362219367	14.772	0.18057	14.772	14.682	14.863	0					10	4	3	0	0	0	0.27249	1	3677	3677		52.937	18.764	1	947200			42470	2761	28137	28254	43016	43016					-0.005676643309470819
TEKRSTVAC	9	Unmodified	_TEKRSTVAC_					0	0	0		ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.752685546875	2	497.752941	993.491329	-1.1306	-0.00056275	0.27453	0.00013665	-0.85605	-0.0004261	497.75322489901856	14.459	0.086817	14.459	14.407	14.494	0					6	4	2	0	0	0	0.44593	1	3131	3131		37.812	7.3079	1	53881			42471	2761	28137	28254	43017	43017					-0.005676643309470819
TEKRSTVAC	9	Unmodified	_TEKRSTVAC_					0	0	0		ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7527160644531	2	497.752941	993.491329	0.80095	0.00039868	-2.0503	-0.0010205	-1.2493	-0.00062184	497.75189642436806	14.739	0.35473	14.739	14.539	14.893	0					17	7	3	0	0	0	0.41113	1	3899	3899		40.778	2.9666	1	925090			42472	2761	28137	28254	43018	43018					-0.005676643309470819
TEKRSTVAC	9	Unmodified	_TEKRSTVAC_					0	0	0		ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.75274658203125	2	497.752941	993.491329	2.9138	0.0014504	-3.8049	-0.0018939	-0.89108	-0.00044354	497.7512263120164	14.686	0.4195	14.686	14.525	14.945	0					11	8	3	0	0	0	0.24334	1	3719	3719		56.434	11.903	1	1829600			42473	2761	28137	28254	43019	43019					-0.005676643309470819
TEKSPEVTL	9	Unmodified	_TEKSPEVTL_					0	0	0		nc|ENSG00000096996|P42701-3|IL12RB1;IL12RB1|p.Y481Lfs*8|1|0.07|ENSG00000096996|chr19:18066583-18066584|-/A|frameshift_variant;nc|ENSG00000096996|P42701-2|IL12RB1;ENSG00000096996|ENST00000593993|IL12RB1;IL12RB1|p.P237Hfs*5|1|0.35|ENSG00000096996|chr19:18073590-18073590|G/-|frameshift_variant	nc|ENSG00000096996|P42701-3|IL12RB1	nc|ENSG00000096996|P42701-3|IL12RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.26922607421875	2	502.268947	1002.52334	-0.07284	-3.6585E-05	0.80016	0.00040189	0.72732	0.00036531	502.26951971371295	29.52	0.65466	29.52	29.157	29.812	0					33	16	3	0	0	0	0.076532	1	10561	10561		85.862	16.234	1	867520			42474	1922	28138	28255	43020	43020					0.02218026623870628
TEKSPEVTL	9	Unmodified	_TEKSPEVTL_					0	0	0		nc|ENSG00000096996|P42701-3|IL12RB1;IL12RB1|p.Y481Lfs*8|1|0.07|ENSG00000096996|chr19:18066583-18066584|-/A|frameshift_variant;nc|ENSG00000096996|P42701-2|IL12RB1;ENSG00000096996|ENST00000593993|IL12RB1;IL12RB1|p.P237Hfs*5|1|0.35|ENSG00000096996|chr19:18073590-18073590|G/-|frameshift_variant	nc|ENSG00000096996|P42701-3|IL12RB1	nc|ENSG00000096996|P42701-3|IL12RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.26910400390625	2	502.268947	1002.52334	0.97631	0.00049037	-1.3276	-0.0006668	-0.35127	-0.00017643	502.26829163112416	29.514	0.39544	29.514	29.321	29.717	0					22	8	4	0	0	0	0.037924	1	10949	10949		101.25	29.375	1	1105100			42475	1922	28138	28255	43021	43021					0.02218026623870628
TEKSPLTNK	9	Unmodified	_TEKSPLTNK_					0	0	0			REV__ENSG00000269226|ENST00000598087|TMSB15C	REV__ENSG00000269226|ENST00000598087|TMSB15C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.2825012207031	2	509.282389	1016.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.156	1	24.156	23.656	24.656	0								0	0	0	0.1836	1	7091	7091		53.351	7.3792	1		+		42476	15678	28139	28256	43022	43022					0.04261135235026359
TEKSPNPSL	9	Unmodified	_TEKSPNPSL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.75335693359375	2	486.753464	971.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.449	1	22.449	21.949	22.949	0								0	0	0	0.30009	1	6610	6610		35.152	5.3105	1				42477	3506	28140	28257	43023	43023					0.005488733096171927
TEKSTVPV	8	Unmodified	_TEKSTVPV_					0	0	0		UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant;UGDH|p.M432Nfs*20|1|0.29|ENSG00000109814|chr4:39503954-39503955|-/T|frameshift_variant;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-3|UGDH	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7399597167969	2	430.739825	859.465098	-0.52642	-0.00022675	1.0051	0.00043292	0.47865	0.00020617	430.7401901528153	21.348	0.22866	21.348	21.204	21.433	0					12	5	3	0	0	0	0.5676	1	6780	6780		53.351	12.573	1	444890			42478	2593	28141	28258	43024	43024					0.029743897692469545
TEKTVFTVF	9	Unmodified	_TEKTVFTVF_					0	0	0		ENSG00000165474|ENST00000382848|GJB2;ENSG00000169562|ENST00000361726|GJB1	ENSG00000165474|ENST00000382848|GJB2	ENSG00000165474|ENST00000382848|GJB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2885131835938	2	536.289682	1070.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.979	1	46.979	46.479	47.479	0								0	0	0	0.2591	1	18779	18779		42.396	1.618	1				42479	5799	28142	28259	43025	43025					0.0323520738318166
TEKTVFTVF	9	Unmodified	_TEKTVFTVF_					0	0	0		ENSG00000165474|ENST00000382848|GJB2;ENSG00000169562|ENST00000361726|GJB1	ENSG00000165474|ENST00000382848|GJB2	ENSG00000165474|ENST00000382848|GJB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2905883789062	2	536.289682	1070.56481	3.3529	0.0017981	-3.9509	-0.0021188	-0.59803	-0.00032072	536.2882833876695	46.962	0.18157	46.962	46.903	47.084	0					13	8	2	0	0	0	0.22837	1	18769	18769		58.23	8.7884	1	86354			42480	5799	28142	28259	43026	43026					0.0323520738318166
TEKTVSGPSV	10	Unmodified	_TEKTVSGPSV_					0	0	0			REV__MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	REV__MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.76617431640625	2	502.766571	1003.51859	-0.048778	-2.4524E-05	0.25524	0.00012833	0.20647	0.0001038	502.7664241909809	36.749	0.22442	36.749	36.666	36.891	0					18	12	2	0	0	0	0.48965	1	12038	12038		46.457	0	1	92377	+		42481	15486	28143	28260	43027	43027					0.016971424811117686
TEKVKELI	8	Unmodified	_TEKVKELI_					0	0	0			REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	REV__PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.292236328125	2	480.292225	958.569897	-0.30361	-0.00014582	0.21111	0.00010139	-0.092503	-4.4428E-05	480.29236565181805	37.76	0.22185	37.76	37.606	37.828	0					20	10	3	0	0	0	0.51931	1	13500	13500		58.23	3.4536	1	164490	+		42482	17080	28144	28261	43028	43028					0.08895511245816579
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.80279541015625	2	502.802957	1003.59136	0.5387	0.00027086	-0.17874	-8.9871E-05	0.35996	0.00018099	502.8028347349663	25.553	0.18624	25.553	25.471	25.658	0					13	6	3	0	0	0	0.11635	1	7696	7696		59.931	20.678	1	150220			42483	1269	28145	28262	43029	43029					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.53759765625	3	335.53773	1003.59136	0.24628	8.2635E-05	-0.22831	-7.6607E-05	0.017967	6.0287E-06	335.53755716479674	25.537	0.12318	25.537	25.492	25.615	0					10	4	3	0	0	0	0.16806	1	7688	7688		65.465	24.687	1	83600			42484	1269	28145	28262	43030	43030					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.8028259277344	2	502.802957	1003.59136	0.723	0.00036353	-0.60972	-0.00030657	0.11328	5.6956E-05	502.8026341973724	25.877	0.47349	25.877	25.744	26.218	0					14	9	2	0	0	0	0.085309	1	8867	8867		76.17	28.21	1	1783800			42485	1269	28145	28262	43031	43031					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.5377502441406	3	335.53773	1003.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.889	1	25.889	25.389	26.389	0								0	0	0	0.13425	1	8861	8861		63.534	12.006	1				42486	1269	28145	28262	43032	43032					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.8026428222656	2	502.802957	1003.59136	-0.90149	-0.00045327	0.75216	0.00037819	-0.14933	-7.5085E-05	502.8033041291126	25.592	0.16999	25.592	25.531	25.701	0					9	5	2	0	0	0	0.16962	1	7984	7984		58.246	30.364	1	193520			42487	1269	28145	28262	43033	43033					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.5376892089844	3	335.53773	1003.59136	0.53616	0.0001799	-0.59376	-0.00019923	-0.057605	-1.9329E-05	335.5375811459465	25.871	0.2458	25.871	25.721	25.967	0					7	3	3	0	0	0	0.30841	1	9199	9199		49.536	10.782	1	759770			42488	1269	28145	28262	43034	43034					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.80279541015625	2	502.802957	1003.59136	-0.21375	-0.00010748	0.062388	3.1369E-05	-0.15137	-7.6107E-05	502.8032213871312	25.662	0.13953	25.662	25.581	25.72	0					5	3	2	0	0	0	0.10821	1	8202	8202		70.816	12.586	1	120590			42489	1269	28145	28262	43035	43035					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;KIF1B|p.N365Mfs*8|1|0.32|ENSG00000054523|chr1:10278037-10278037|C/-|frameshift_variant;KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.80328369140625	2	502.802957	1003.59136	0.13353	6.7137E-05	0.050005	2.5143E-05	0.18353	9.228E-05	502.80309026554573	25.695	0.30801	25.695	25.608	25.916	0					8	5	3	0	0	0	0.079477	1	8195	8195		78.264	22.76	1	245150			42490	1269	28145	28262	43036	43036					0.08970896274524875
TELAGHAL	8	Unmodified	_TELAGHAL_					0	0	0		EFS|p.Q548H|1|0.16|ENSG00000100842|chr14:23357268-23357268|C/A|missense_variant	EFS|p.Q548H|1|0.16|ENSG00000100842|chr14:23357268-23357268|C/A|missense_variant	EFS|p.Q548H|1|0.16|ENSG00000100842|chr14:23357268-23357268|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.2192687988281	2	406.21906	810.423567	-1.3814	-0.00056115	1.6069	0.00065275	0.2255	9.1601E-05	406.2197313564345	24.781	0.13964	24.781	24.706	24.846	0					9	5	2	0	0	0	0.527	1	7631	7631		57.453	12.922	1	91456			42491	889	28146	28263	43037	43037					0.0107725380055399
TELAMRQSV	9	Unmodified	_TELAMRQSV_					0	0	0		CON__P05784;ENST00000427733.1_1_13:90882929-90883235:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.769287109375	2	517.768591	1033.52263	0.072582	3.758E-05	0.63684	0.00032974	0.70943	0.00036732	517.7689634928006	28.298	0.20739	28.298	28.204	28.412	0					15	7	3	0	0	0	0.019258	1	9102	9102		123.21	39.921	1	470620		+	42492	2650;631	28147	28264	43038	43038					0.007209087031696981
TELAMRQSV	9	Unmodified	_TELAMRQSV_					0	0	0		CON__P05784;ENST00000427733.1_1_13:90882929-90883235:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.769287109375	2	517.768591	1033.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.549	1	28.549	28.049	29.049	0								0	0	0	0.0091041	1	10472	10472		172.25	53.506	1			+	42493	2650;631	28147	28264	43039	43039					0.007209087031696981
TELAMRQSV	9	Unmodified	_TELAMRQSV_					0	0	0		CON__P05784;ENST00000427733.1_1_13:90882929-90883235:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7697143554688	2	517.768591	1033.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.351	1	28.351	27.851	28.851	0								0	0	0	0.0016356	1	9398	9398		123.21	37.849	1			+	42494	2650;631	28147	28264	43040	43040					0.007209087031696981
TELAMRQSV	9	Unmodified	_TELAMRQSV_					0	0	0		CON__P05784;ENST00000427733.1_1_13:90882929-90883235:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7689208984375	2	517.768591	1033.52263	-1.436	-0.00074353	2.9116	0.0015075	1.4755	0.00076398	517.7698950293486	28.354	0.24964	28.354	28.227	28.477	0					13	6	3	0	0	0	0.037712	1	9390	9390		101.46	31.832	1	240660		+	42495	2650;631	28147	28264	43041	43041					0.007209087031696981
TELAMRQSV	9	Unmodified	_TELAMRQSV_					0	0	0		CON__P05784;ENST00000427733.1_1_13:90882929-90883235:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7689819335938	2	517.768591	1033.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.523	1	28.523	28.023	29.023	0								0	0	0	0.0014292	1	10343	10343		146.79	39.778	1			+	42496	2650;631	28147	28264	43042	43042					0.007209087031696981
TELAMRQSV	9	Unmodified	_TELAMRQSV_					0	0	0		CON__P05784;ENST00000427733.1_1_13:90882929-90883235:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7686157226562	2	517.768591	1033.52263	3.3335	0.001726	-1.6703	-0.00086483	1.6632	0.00086113	517.7671924850484	28.479	0.31377	28.479	28.327	28.641	0					15	6	3	0	0	0	0.0076184	1	10335	10335		146.79	45.533	1	1290000		+	42497	2650;631	28147	28264	43043	43043					0.007209087031696981
TELAQKKKI	9	Unmodified	_TELAQKKKI_					0	0	0		nc|ENSG00000122432|Q5VX52|SPATA1	nc|ENSG00000122432|Q5VX52|SPATA1	nc|ENSG00000122432|Q5VX52|SPATA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	353.5570068359375	3	353.557125	1057.64954	0.49199	0.00017395	-0.61381	-0.00021702	-0.12183	-4.3072E-05	353.55691309647153	17.732	0.16933	17.732	17.647	17.816	0					12	4	4	0	0	0	0.25716	1	5045	5045		54.776	1.8396	1	1156200			42498	11504	28148	28265	43044	43044					0.12302577919808755
TELAQKKKI	9	Unmodified	_TELAQKKKI_					0	0	0		nc|ENSG00000122432|Q5VX52|SPATA1	nc|ENSG00000122432|Q5VX52|SPATA1	nc|ENSG00000122432|Q5VX52|SPATA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.55743408203125	3	353.557125	1057.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.486	1	17.486	16.986	17.986	0								0	0	0	0.24544	1	4369	4369		44.377	5.1244	1				42499	11504	28148	28265	43045	43045					0.12302577919808755
TELCMYLL	8	Unmodified	_TELCMYLL_					0	0	0			REV__nc|ENSG00000129219|O14939-3|PLD2	REV__nc|ENSG00000129219|O14939-3|PLD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.24224853515625	2	493.240289	984.466026	2.7651	0.0013638	0.24386	0.00012028	3.0089	0.0014841	493.2406817266523	36.553	0.56376	36.553	36.445	37.008	0					33	11	5	0	0	0	0.55361	1	14206	14206		54.765	11.139	1	2687200	+		42500	14542	28149	28266	43046	43046					-0.02682855177727106
TELEKRAAV	9	Unmodified	_TELEKRAAV_					0	0	0			REV__ENST00000271469.7_2_1:162531513-162535849:+|nuORF	REV__ENST00000271469.7_2_1:162531513-162535849:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.5292663574219	3	339.529346	1015.56621	0.51207	0.00017386	-0.56411	-0.00019153	-0.05204	-1.7669E-05	339.52911881108366	19.963	0.20736	19.963	19.903	20.11	0					8	4	3	0	0	0	0.16806	1	6124	6124		65.465	0	1	1292800	+		42501	18102	28150	28267	43047	43047					0.059048414719427456
TELEYIHAL	9	Unmodified	_TELEYIHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.785400390625	2	544.784764	1087.55498	1.968	0.0010722	-1.5001	-0.00081721	0.46796	0.00025494	544.7840650413879	43.702	0.15131	43.702	43.625	43.776	0					7	4	2	0	0	0	0.087582	1	17508	17508		82.305	20.198	1	105960			42502	3727	28151	28268	43048	43048					0.014700193778026005
TELGKIATL	9	Unmodified	_TELGKIATL_					0	0	0		tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2845764160156	2	473.2844	944.554247	-0.5078	-0.00024034	0.73692	0.00034877	0.22911	0.00010843	473.2847529364228	36.2	0.12716	36.2	36.103	36.231	0					7	4	2	0	0	0	0.21263	1	12940	12940		60.118	0	1	80471			42503	22792	28152	28269	43049	43049					0.07975224728750163
TELGRAAKL	9	Unmodified	_TELGRAAKL_					0	0	0		ENSG00000117592|ENST00000340385|PRDX6;ENST00000460950.1_1_1:173446500-173450645:+|nuORF;PRDX6|p.K125Rfs*5|1|0.38|ENSG00000117592|chr1:173485479-173485479|A/-|frameshift_variant	ENSG00000117592|ENST00000340385|PRDX6	ENSG00000117592|ENST00000340385|PRDX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7871398925781	2	479.787641	957.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.554	1	23.554	23.054	24.054	0								0	0	0	0.27025	1	7093	7093		40.778	1.972	1				42504	3045	28153	28270	43050	43050					0.0802516268013278
TELIQKAKL	9	Unmodified	_TELIQKAKL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.3268432617188	2	522.326599	1042.63865	0.81757	0.00042704	-0.2585	-0.00013502	0.55906	0.00029201	522.326559472201	27.465	0.13827	27.465	27.395	27.533	0					7	4	2	0	0	0	0.11898	1	8471	8471		58.782	12.83	1	231580			42505	3911	28154	28271	43051	43051					0.11903175545512568
TELIQKAKL	9	Unmodified	_TELIQKAKL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	348.553466796875	3	348.553492	1042.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.436	1	27.436	26.936	27.936	0								0	0	0	0.20989	1	8453	8453		49.536	8.1094	1				42506	3911	28154	28271	43052	43052					0.11903175545512568
TELIQKAKL	9	Unmodified	_TELIQKAKL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.3265380859375	2	522.326599	1042.63865	0.083814	4.3778E-05	0.35489	0.00018537	0.43871	0.00022915	522.3268322775102	27.743	0.26828	27.743	27.61	27.879	0					16	6	4	0	0	0	0.032181	1	9717	9717		101.25	16.337	1	794280			42507	3911	28154	28271	43053	43053					0.11903175545512568
TELIQKAKL	9	Unmodified	_TELIQKAKL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5534973144531	3	348.553492	1042.63865	0.5132	0.00017888	-0.54176	-0.00018883	-0.02856	-9.9547E-06	348.55327712327437	27.738	0.26074	27.738	27.586	27.846	0					14	5	4	0	0	0	0.056004	1	10070	10070		93.143	24.297	1	1054300			42508	3911	28154	28271	43054	43054					0.11903175545512568
TELIQKAKL	9	Unmodified	_TELIQKAKL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	348.55340576171875	3	348.553492	1042.63865	-1.9789	-0.00068976	1.5836	0.00055197	-0.39531	-0.00013779	348.5540230937343	27.531	0.13297	27.531	27.443	27.576	0					5	3	2	0	0	0	0.46194	1	9029	9029		36.447	0.82846	1	114050			42509	3911	28154	28271	43055	43055					0.11903175545512568
TELKKELK	8	Unmodified	_TELKKELK_					0	0	0		tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.8051452636719	2	494.8055	987.596446	-0.42383	-0.00020971	-0.073297	-3.6268E-05	-0.49713	-0.00024598	494.8054201139877	28.639	0.29264	28.639	28.553	28.846	0					19	7	4	0	0	0	0.3049	1	10147	10147		82.241	0	1	1605700			42510	22696	28155	28272	43056	43056					0.10215200137133706
TELKKRTME	9	Unmodified	_TELKKRTME_					0	0	0			REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.309814453125	2	568.310623	1134.60669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.036	1	37.036	36.536	37.536	0								0	0	0	0.29774	1	12137	12137		35.618	6.4482	1		+		42511	22205	28156	28273	43057	43057					0.044774398000754445
TELKKVIET	9	Unmodified	_TELKKVIET_					0	0	0			REV__ENSG00000115816|ENST00000234170|CEBPZ	REV__ENSG00000115816|ENST00000234170|CEBPZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.816162109375	2	530.816064	1059.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.314	1	23.314	22.814	23.814	0								0	0	0	0.15687	1	6988	6988		58.23	0	1		+		42512	14125	28157	28274	43058	43058					0.09015165445998718
TELLFVPI	8	Unmodified	_TELLFVPI_					0	0	0			REV__SLC6A13|p.V227*|1|0.26|ENSG00000010379|chr12:237175-237175|C/-|frameshift_variant	REV__SLC6A13|p.V227*|1|0.26|ENSG00000010379|chr12:237175-237175|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.27655029296875	2	466.278586	930.54262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.354	1	36.354	35.854	36.854	0								0	0	0	1.7419	1	13012	13012		46.766	0	1		+		42513	12898	28158	28275	43059	43059					0.07457027705413566
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.32403564453125	2	493.32386	984.633166	-0.070003	-3.4534E-05	-0.3333	-0.00016442	-0.4033	-0.00019896	493.32370068179193	33.49	0.88788	33.49	33.398	34.286	0					81	35	4	0	0	0	0.25873	1	10873	10873		96.19	0	1	6666100			42514	6067	28159	28276	43060	43060					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.3238220214844	2	493.32386	984.633166	-0.49666	-0.00024501	0.41831	0.00020636	-0.07835	-3.8652E-05	493.3240761772734	33.773	2.1025	33.773	33.609	35.711	0					124	55	5	0	0	0	0.24328	1	12486	12486		113.41	0	1	29800000			42515	6067	28159	28276	43061	43061					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.2182922363281	3	329.218332	984.633166	0.5269	0.00017347	-0.56996	-0.00018764	-0.043057	-1.4175E-05	329.21815424937336	33.777	1.9224	33.777	33.609	35.531	0					103	50	4	0	0	0	0.59411	2	12507	12487;12507		60.972	0	1	20855000			42516	6067	28159	28276	43062;43063	43063					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.32342529296875	2	493.32386	984.633166	-0.74611	-0.00036808	0.44006	0.00021709	-0.30605	-0.00015098	493.324074953674	33.745	0.93447	33.745	33.634	34.568	0					65	23	4	0	0	0	0.24622	2	12914	12914;13154		108.09	0	1	16389000			42517	6067	28159	28276	43064;43065	43064					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.32366943359375	2	493.32386	984.633166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.699	1	34.699	34.199	35.199	0								0	0	0	1.7419	1	13395	13395		63.306	0	1				42518	6067	28159	28276	43066	43066					0.14023496753691234
TELLKSHL	8	Unmodified	_TELLKSHL_					0	0	0			REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7763671875	2	470.776742	939.538931	-0.86148	-0.00040557	0.32292	0.00015202	-0.53856	-0.00025354	470.77682827014223	32.872	0.25988	32.872	32.743	33.003	0					8	6	2	0	0	0	0.60719	1	12519	12519		47.916	0	1	193790	+		42519	12770	28160	28277	43067	43067					0.0667435793156983
TELLNETVT	9	Unmodified	_TELLNETVT_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.5137634277344	3	340.513362	1018.51826	0.51066	0.00017389	0.71253	0.00024263	1.2232	0.00041651	340.5135873487036	13.337	0.27538	13.337	13.142	13.417	0					12	7	3	0	0	0	0.30951	1	3017	3017		75.043	13.352	1	984770	+		42520	16645	28161	28278	43068	43068					0.009737227612504284
TELLRKII	8	Unmodified	_TELLRKII_					0	0	0			REV__GRM8|p.K296Nfs*2|1|0.58|ENSG00000179603|chr7:126904102-126904102|T/-|frameshift_variant	REV__GRM8|p.K296Nfs*2|1|0.58|ENSG00000179603|chr7:126904102-126904102|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.2185363769531	3	329.218332	984.633166	-0.6677	-0.00021982	0.43022	0.00014164	-0.23748	-7.8182E-05	329.2184958244357	33.541	0.60566	33.541	33.461	34.067	0					62	23	4	0	0	0	0.67475	1	11243	11243		47.916	0	1	8420900	+		42521	16783	28162	28279	43069	43069					0.14023496753691234
TELMVLCI	8	Unmodified	_TELMVLCI_					0	0	0			REV__ENSG00000169564|ENST00000303577|PCBP1	REV__ENSG00000169564|ENST00000303577|PCBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2427062988281	2	461.242832	920.471111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.613	1	30.613	30.113	31.113	0								0	0	0	1.7419	1	10447	10447		46.766	8.9549	1		+		42522	16320	28163	28280	43070	43070					0.007694486849004534
TELRGTWSL	9	Unmodified	_TELRGTWSL_					0	0	0		ENSG00000145384|ENST00000274024|FABP2;FABP2|p.E86Q|1|0.24|ENSG00000145384|chr4:119319628-119319628|C/G|missense_variant	ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.782958984375	2	531.782556	1061.55056	3.4163	0.0018167	-4.0886	-0.0021743	-0.67232	-0.00035753	531.781032988346	41.266	0.42581	41.266	41.131	41.557	0					22	10	4	0	0	0	0.18416	1	16389	16389		63.534	15.877	1	226520			42523	4669	28164	28281	43071	43071					0.022245549549097632
TELRLLQEFAA	11	Unmodified	_TELRLLQEFAA_					0	0	0			REV__EXOC3L4|p.G702Afs*17|1|0.41|ENSG00000205436|chr14:103110156-103110156|G/-|frameshift_variant	REV__EXOC3L4|p.G702Afs*17|1|0.41|ENSG00000205436|chr14:103110156-103110156|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	645.8558959960938	2	645.856252	1289.69795	0.44465	0.00028718	-1.3866	-0.00089552	-0.94191	-0.00060834	645.8551013908569	43.132	0.22655	43.132	43.041	43.268	0					26	12	3	0	0	0	0.74306	1	16280	16280		23.523	0	1	234930	+		42524	17524	28165	28282	43072	43072					0.06469026769059383
TELTNLIKI	9	Unmodified	_TELTNLIKI_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8186645507812	2	522.818607	1043.62266	-0.050078	-2.6181E-05	0.13181	6.8915E-05	0.081737	4.2734E-05	522.8186732598879	29.792	0.16809	29.792	29.683	29.851	0					5	3	2	0	0	0	0.40353	1	11082	11082		34.173	0	1	73371			42525	7633	28166	28283	43073	43073					0.10259469308630287
TELTTKSSL	9	Unmodified	_TELTTKSSL_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.268798828125	2	490.268947	978.523341	-0.046626	-2.2859E-05	-0.10596	-5.195E-05	-0.15259	-7.4809E-05	490.2689704572875	25.867	0.28004	25.867	25.699	25.979	0					9	5	2	0	0	0	0.13726	1	7799	7799		70.816	16.052	1	196150			42526	3862	28167	28284	43074	43074					0.033220266238686236
TELTTKSSL	9	Unmodified	_TELTTKSSL_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2685852050781	2	490.268947	978.523341	-0.47908	-0.00023488	-0.025639	-1.257E-05	-0.50472	-0.00024745	490.26887372099077	26.078	0.38199	26.078	25.986	26.368	0					26	9	4	0	0	0	0.014413	1	8937	8937		131.62	131.62	1	6277000			42527	3862	28167	28284	43075	43075					0.033220266238686236
TELTTKSSL	9	Unmodified	_TELTTKSSL_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.26885986328125	2	490.268947	978.523341	-1.2459	-0.00061081	0.66054	0.00032384	-0.58533	-0.00028697	490.26938590639963	25.886	0.2182	25.886	25.712	25.93	0					5	3	2	0	0	0	0.36892	1	8075	8075		44.377	5.1244	1	121830			42528	3862	28167	28284	43076	43076					0.033220266238686236
TELTTKSSL	9	Unmodified	_TELTTKSSL_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2688903808594	2	490.268947	978.523341	-0.72345	-0.00035469	0.43841	0.00021494	-0.28504	-0.00013975	490.2691382698357	26.059	0.31191	26.059	25.951	26.263	0					18	6	4	0	0	0	0.014413	1	9272	9272		131.62	40.84	1	2747300			42529	3862	28167	28284	43077	43077					0.033220266238686236
TELVHVKP	8	Unmodified	_TELVHVKP_					0	0	0			REV__ENST00000415202.1_1_1:211849190-211858945:+|nuORF	REV__ENST00000415202.1_1_1:211849190-211858945:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.77105712890625	2	461.77146	921.528367	0.72126	0.00033306	-3.5697	-0.0016484	-2.8484	-0.0013153	461.77075926486657	36.011	0.50426	36.011	35.787	36.292	0					43	15	4	0	0	0	0.65276	1	13929	13929		40.573	3.4135	1	731690	+		42530	19025	28168	28285	43078	43078					0.0644637527714167
TELVNVTHL	9	Unmodified	_TELVNVTHL_					0	0	0		CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P683Qfs*70|1|0.34|ENSG00000167258|chr17:39490669-39490669|C/-|frameshift_variant;CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant;CDK12|p.P536Hfs*74|1|0.37|ENSG00000167258|chr17:39471435-39471435|C/-|frameshift_variant;CDK12|p.P526Lfs*84|1|0.16|ENSG00000167258|chr17:39471406-39471406|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2852172851562	2	513.284931	1024.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.537	1	39.537	39.037	40.037	0								0	0	0	0.19847	1	15555	15555		51.193	16.041	1				42531	457;458	28169	28286	43079	43079					0.04401439097682669
TELVNVTHL	9	Unmodified	_TELVNVTHL_					0	0	0		CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P683Qfs*70|1|0.34|ENSG00000167258|chr17:39490669-39490669|C/-|frameshift_variant;CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant;CDK12|p.P536Hfs*74|1|0.37|ENSG00000167258|chr17:39471435-39471435|C/-|frameshift_variant;CDK12|p.P526Lfs*84|1|0.16|ENSG00000167258|chr17:39471406-39471406|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant	CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2844848632812	2	513.284931	1024.55531	0.088192	4.5268E-05	0.56653	0.00029079	0.65473	0.00033606	513.2849107374055	39.469	0.15595	39.469	39.387	39.543	0					5	3	2	0	0	0	0.13726	1	15602	15602		70.816	18.517	1	47145			42532	457;458	28169	28286	43080	43080					0.04401439097682669
TEMEHEVAC	9	Unmodified	_TEMEHEVAC_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7080688476562	2	524.707342	1047.40013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.198	1	25.198	24.698	25.698	0								0	0	0	0.31623	1	7552	7552		31.955	1.4512	1				42533	6043	28170	28287	43081	43081					-0.12167296090569835
TEMEHKVAF	9	Unmodified	_TEMEHKVAF_					0	0	0		SYNE2|p.I4286M|1|0.08|ENSG00000054654|chr14:64119444-64119444|T/G|missense_variant	SYNE2|p.I4286M|1|0.08|ENSG00000054654|chr14:64119444-64119444|T/G|missense_variant	SYNE2|p.I4286M|1|0.08|ENSG00000054654|chr14:64119444-64119444|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.263671875	2	546.263142	1090.51173	1.8602	0.0010161	-2.9686	-0.0016216	-1.1084	-0.00060548	546.7628525632794	41.945	0.50942	41.945	41.8	42.31	0					73	25	5	0	0	0	0.2873	2	16005	15895;16005		51.335	3.3759	1	681180			42534	22508	28171	28288	43082;43083	43083					-0.02990493671131844
TEMGHGTHL	9	Unmodified	_TEMGHGTHL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;ENST00000591857.5_1_17:73953534-73975166:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.72393798828125	2	491.724184	981.433814	-1.262	-0.00062056	0.82307	0.00040473	-0.43894	-0.00021584	491.7243923550402	19.734	0.10488	19.734	19.682	19.787	0					9	4	3	0	0	0	0.24095	1	5390	5390		56.721	16.148	1	102990			42535	5411	28172	28289	43084	43084					-0.05764506536490899
TEMGHGTHL	9	Unmodified	_TEMGHGTHL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;ENST00000591857.5_1_17:73953534-73975166:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.723876953125	2	491.724184	981.433814	0.58222	0.00028629	-1.5107	-0.00074284	-0.92847	-0.00045655	491.7235826384131	19.918	0.21971	19.918	19.809	20.028	0					9	4	3	0	0	0	0.087582	1	6391	6391		82.305	30.006	1	979880			42536	5411	28172	28289	43085	43085					-0.05764506536490899
TEMGHGTHL	9	Unmodified	_TEMGHGTHL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;ENST00000591857.5_1_17:73953534-73975166:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.7240905761719	2	491.724184	981.433814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.794	1	19.794	19.294	20.294	0								0	0	0	0.14517	1	5445	5445		60.972	7.6205	1				42537	5411	28172	28289	43086	43086					-0.05764506536490899
TENILKAEL	9	Unmodified	_TENILKAEL_					0	0	0		MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant;MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant;MON2|p.V1435Afs*17|1|0.03|ENSG00000061987|chr12:62566430-62566431|-/CATCT|frameshift_variant;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;MON2|p.E989Nfs*2|1|0.16|ENSG00000061987|chr12:62552924-62552924|A/-|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7925415039062	2	515.792589	1029.57063	1.4398	0.00074266	-2.2962	-0.0011844	-0.85637	-0.00044171	515.7914732522748	39.78	0.26297	39.78	39.6	39.863	0					15	9	3	0	0	0	0.099758	1	15655	15655		79.489	8.6729	1	148630			42538	1327	28173	28290	43087	43087					0.057023058948516336
TENLTKEHL	9	Unmodified	_TENLTKEHL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7861938476562	2	542.785296	1083.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.012	1	24.012	23.512	24.512	0								0	0	0	0.1219	1	8350	8350		66.429	6.311	1				42539	1919	28174	28291	43088	43088					0.01760233746722406
TENPHGARL	9	Unmodified	_TENPHGARL_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7567138671875	2	497.756872	993.499192	0.19173	9.5434E-05	-1.6414	-0.00081701	-1.4497	-0.00072158	497.756597590796	17.561	0.17948	17.561	17.524	17.703	0					10	5	3	0	0	0	0.078509	1	4217	4217		85.161	37.245	1	214940			42540	7958	28175	28292	43089	43089					0.002182309808517857
TENPHGARL	9	Unmodified	_TENPHGARL_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7570495605469	2	497.756872	993.499192	0.56102	0.00027925	-0.28252	-0.00014062	0.2785	0.00013863	497.7566303647466	17.914	0.098171	17.914	17.828	17.926	0					6	2	3	0	0	0	0.048471	1	5132	5132		95.815	34.843	1	368820			42541	7958	28175	28292	43090	43090					0.002182309808517857
TENPHGARL	9	Unmodified	_TENPHGARL_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7566833496094	2	497.756872	993.499192	0.70075	0.0003488	-1.1634	-0.00057911	-0.46269	-0.00023031	497.75666059803234	17.902	0.28124	17.902	17.816	18.097	0					12	6	3	0	0	0	0.085655	1	5127	5127		82.75	36.799	1	1691100			42542	7958	28175	28292	43091	43091					0.002182309808517857
TENPHGARL	9	Unmodified	_TENPHGARL_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7565612792969	2	497.756872	993.499192	-0.026325	-1.3104E-05	-0.54696	-0.00027225	-0.57328	-0.00028535	497.75659977052254	17.862	0.27006	17.862	17.751	18.022	0					7	5	2	0	0	0	0.11898	1	5389	5389		75.043	16.261	1	2667100			42543	7958	28175	28292	43092	43092					0.002182309808517857
TENPHGARL	9	Unmodified	_TENPHGARL_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.75665283203125	2	497.756872	993.499192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.86	1	17.86	17.36	18.36	0								0	0	0	0.029874	1	5232	5232		95.815	56.794	1				42544	7958	28175	28292	43093	43093					0.002182309808517857
TEPCPHISLQ	10	Unmodified	_TEPCPHISLQ_					0	0	0		ENST00000373511.6_1_9:128200812-128200935:-|nuORF	ENST00000373511.6_1_9:128200812-128200935:-|nuORF	ENST00000373511.6_1_9:128200812-128200935:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.7734985351562	2	562.773874	1123.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.832	1	43.832	43.332	44.332	0								0	0	0	0.35072	1	17557	17557		42.864	8.6917	1				42545	8997	28176	28293	43094	43094					-0.02363108642384759
TEPELELEI	9	Unmodified	_TEPELELEI_					0	0	0			REV__ENSG00000101842|ENST00000217957|VSIG1	REV__ENSG00000101842|ENST00000217957|VSIG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7747192382812	2	536.774062	1071.53357	1.2856	0.00069007	0.90813	0.00048746	2.1937	0.0011775	536.7744951589564	29.97	0.29515	29.97	29.868	30.163	0					12	6	3	0	0	0	0.26904	1	11143	11143		53.351	1.8237	1	422450	+		42546	13613	28177	28294	43095	43095					0.000665895584234022
TEPISSTFL	9	Unmodified	_TEPISSTFL_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.75701904296875	2	497.758215	993.501877	1.5268	0.00075999	-3.8801	-0.0019314	-2.3533	-0.0011714	497.7559835728451	17.572	0.083412	17.572	17.534	17.617	0					4	2	2	0	0	0	0.35045	1	4224	4224		45.952	3.4775	1	57920	+		42547	15871	28178	28295	43096	43096					0.004866415951369163
TEPMPQEEW	9	Unmodified	_TEPMPQEEW_					0	0	0			REV__nc|ENSG00000162894|O60667-2|FCMR	REV__nc|ENSG00000162894|O60667-2|FCMR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.7443237304688	2	573.742239	1145.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.245	1	29.245	28.745	29.745	0								0	0	0	0.3368	1	9813	9813		27.882	3.3631	1		+		42548	15845	28179	28296	43097	43097					-0.0969909415030088
TEPSQLLKS	9	Unmodified	_TEPSQLLKS_					0	0	0		JUP|p.A117T|1|0.67|ENSG00000173801|chr17:41769537-41769537|C/T|missense_variant	JUP|p.A117T|1|0.67|ENSG00000173801|chr17:41769537-41769537|C/T|missense_variant	JUP|p.A117T|1|0.67|ENSG00000173801|chr17:41769537-41769537|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7790222167969	2	501.776939	1001.53933	-0.34116	-0.00017118	3.73	0.0018717	3.3889	0.0017005	501.7787760164703	19.428	0.15336	19.428	19.369	19.522	0					5	3	2	0	0	0	0.24095	1	5284	5284		56.721	1.2168	1	116610			42549	11236	28180	28297	43098	43098					0.03861732860775646
TEPTAGLR	8	Unmodified	_TEPTAGLR_					0	0	0			REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7295837402344	2	422.729792	843.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.409	1	21.409	20.909	21.909	0								0	0	0	1.7419	1	6201	6201		31.955	3.7006	1		+		42550	15751	28181	28298	43099	43099					0.01704638829301075
TEQEITRLKA	10	Unmodified	_TEQEITRLKA_					0	0	0		ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.8339233398438	2	594.832777	1187.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.189	1	41.189	40.689	41.689	0								0	0	0	0.3598	1	16199	16199		41.427	8.6761	1				42551	6033	28182	28299	43100	43100					0.06468167217894916
TEQGKKVR	8	Unmodified	_TEQGKKVR_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2790222167969	2	473.277441	944.540328	2.4065	0.0011389	1.2035	0.00056959	3.61	0.0017085	473.2780061851257	40.042	0.80927	40.042	39.768	40.578	0					34	18	2	0	0	0	0.70598	1	15939	15939		32.812	0	1	185650			42552	2774	28183	28300	43101	43101					0.06583992020330243
TEQLVAIYH	9	Unmodified	_TEQLVAIYH_					0	0	0		ENST00000542112.5_1_11:62621512-62623345:-|nuORF	ENST00000542112.5_1_11:62621512-62623345:-|nuORF	ENST00000542112.5_1_11:62621512-62623345:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.5256042480469	3	358.525713	1072.55531	0.48488	0.00017384	-0.45113	-0.00016174	0.033751	1.21E-05	358.52551558369584	27.538	0.21609	27.538	27.407	27.623	0					9	5	2	0	0	0	0.49003	1	9640	9640		40.778	0	1	392420			42553	10549	28184	28301	43102	43102					0.021934390976412033
TERALALAV	9	Unmodified	_TERALALAV_					0	0	0			REV__ENSG00000135222|ENST00000353151|CSN2	REV__ENSG00000135222|ENST00000353151|CSN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2812805175781	2	472.282192	942.549831	0.21111	9.9705E-05	-0.26346	-0.00012443	-0.052349	-2.4724E-05	472.28190124280263	40.245	0.156	40.245	40.158	40.314	0					11	7	2	0	0	0	0.33044	1	15336	15336		47.657	3.2801	1	42176	+		42554	14788	28185	28302	43103	43103					0.07625760305836593
TERDLCFA	8	Unmodified	_TERDLCFA_					0	0	0		ENST00000607711.1_1_6:15244870-15244918:-|nuORF	ENST00000607711.1_1_6:15244870-15244918:-|nuORF	ENST00000607711.1_1_6:15244870-15244918:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.7173767089844	2	477.72111	953.427666	-0.64378	-0.00030755	-2.2307	-0.0010657	-2.8745	-0.0013732	477.72027328649216	37.846	0.29777	37.846	37.708	38.005	0					11	6	2	0	0	0	0.63077	1	14893	14893		44.117	0	1	105310			42555	11094	28186	28303	43104	43104					-0.05091024768023544
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	388.8715515136719	3	388.871772	1163.59349	0.55713	0.00021665	-0.76006	-0.00029557	-0.20293	-7.8912E-05	388.87141044885794	32.911	0.22219	32.911	32.833	33.055	0					19	9	3	0	0	0	0.41113	1	10656	10656		40.778	13.731	1	181300			42556	4088	28187	28304	43105	43105					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.8041381835938	2	582.80402	1163.59349	-0.19727	-0.00011497	0.97891	0.00057051	0.78163	0.00045554	582.8045870655283	32.96	0.24403	32.96	32.878	33.122	0					14	10	2	0	0	0	0.28504	1	11031	11031		36.447	0	1	128620			42557	4088	28187	28304	43106	43106					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.8047485351562	2	582.80402	1163.59349	1.3839	0.00080655	-0.18398	-0.00010722	1.1999	0.00069933	582.8041330420044	33.145	0.44134	33.145	33.052	33.493	0					20	10	3	0	0	0	0.037712	1	12655	12655		75.043	27.386	1	834530			42558	4088	28187	28304	43107	43107					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	388.8717041015625	3	388.871772	1163.59349	0.2393	9.3057E-05	-0.10134	-3.9406E-05	0.13796	5.365E-05	388.8716594127975	32.95	0.16159	32.95	32.862	33.024	0					9	4	3	0	0	0	0.50858	1	11505	11505		31.53	4.4825	1	120800			42559	4088	28187	28304	43108	43108					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	388.87176513671875	3	388.871772	1163.59349	-0.15157	-5.8942E-05	0.13432	5.2235E-05	-0.017248	-6.7073E-06	388.8718577645565	32.932	0.3074	32.932	32.85	33.157	0					21	9	4	0	0	0	0.51991	1	11497	11497		30.318	4.2543	1	569760			42560	4088	28187	28304	43109	43109					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.8045654296875	2	582.80402	1163.59349	0.56185	0.00032745	0.37717	0.00021982	0.93902	0.00054727	582.8042862912959	32.939	0.24997	32.939	32.85	33.1	0					13	7	3	0	0	0	0.48623	1	11515	11515		14.137	0	1	125320			42561	4088	28187	28304	43110	43110					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.8048706054688	2	582.80402	1163.59349	-1.7072	-0.00099494	2.5076	0.0014614	0.80044	0.0004665	582.8055228627798	32.936	0.15382	32.936	32.878	33.032	0					7	4	2	0	0	0	0.47473	1	11511	11511		14.865	4.5996	1	68116			42562	4088	28187	28304	43111	43111					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.871826171875	3	388.871772	1163.59349	-0.69466	-0.00027013	0.5967	0.00023204	-0.097958	-3.8093E-05	388.8720053055211	33.115	0.6444	33.115	32.972	33.616	0					30	13	4	0	0	0	0.28897	1	12541	12541		51.193	19.159	1	2252200			42563	4088	28187	28304	43112	43112					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.2059020996094	3	388.871772	1163.59349	0.51245	0.00019928	-0.30906	-0.00012018	0.20339	7.9094E-05	388.8716152766623	33.099	0.69582	33.099	33.004	33.7	0					30	14	3	0	0	0	0.24334	1	12534	12534		56.434	22.261	1	3846600			42564	4088	28187	28304	43113	43113					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.8040161132812	2	582.80402	1163.59349	1.6428	0.00095744	-0.56338	-0.00032834	1.0794	0.0006291	582.8038568103102	33.099	0.34428	33.099	33.004	33.348	0					17	7	3	0	0	0	0.082776	1	12536	12536		58.23	14.113	1	1208400			42565	4088	28187	28304	43114	43114					0.018233250123330436
TERDQNEKL	9	Unmodified	_TERDQNEKL_					0	0	0		RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant	RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.1915283203125	3	378.191282	1131.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.185	1	19.185	18.685	19.685	0								0	0	0	0.25587	1	4915	4915		42.864	7.7122	1				42566	2245	28188	28305	43115	43115					-0.008498557469920343
TEREQKNSL	9	Unmodified	_TEREQKNSL_					0	0	0		BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.785400390625	2	552.785827	1103.5571	1.4433	0.00079782	-0.68133	-0.00037663	0.76194	0.00042119	552.7849561265576	14.927	0.083611	14.927	14.88	14.964	0					6	3	2	0	0	0	0.079477	1	3149	3149		51.528	15.081	1	125470			42567	298	28189	28306	43116	43116					0.009464481156101101
TEREQKNSL	9	Unmodified	_TEREQKNSL_					0	0	0		BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7859497070312	2	552.785827	1103.5571	1.8229	0.0010077	-0.88545	-0.00048946	0.93743	0.0005182	552.7853570851435	15.204	0.22471	15.204	15.117	15.342	0					11	5	3	0	0	0	0.024086	1	3868	3868		99.013	53.041	1	954900			42568	298	28189	28306	43117	43117					0.009464481156101101
TEREQKNSL	9	Unmodified	_TEREQKNSL_					0	0	0		BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8595886230469	3	368.859643	1103.5571	0.47011	0.0001734	-0.53985	-0.00019913	-0.069742	-2.5725E-05	368.8594376497846	15.198	0.18156	15.198	15.101	15.283	0					7	4	2	0	0	0	0.42902	1	3883	3883		39.253	2.8061	1	930480			42569	298	28189	28306	43118	43118					0.009464481156101101
TEREQKNSL	9	Unmodified	_TEREQKNSL_					0	0	0		BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7858276367188	2	552.785827	1103.5571	0.22273	0.00012312	0.33404	0.00018465	0.55678	0.00030778	552.785875813186	14.945	0.12	14.945	14.882	15.002	0					10	5	3	0	0	0	0.10506	1	3321	3321		62.107	0	1	137830			42570	298	28189	28306	43119	43119					0.009464481156101101
TEREQKNSL	9	Unmodified	_TEREQKNSL_					0	0	0		BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7860717773438	2	552.785827	1103.5571	1.5956	0.00088205	-1.2701	-0.00070207	0.3256	0.00017999	552.7851886925772	15.187	0.21019	15.187	15.079	15.289	0					11	4	4	0	0	0	0.034688	1	4113	4113		88.177	35.24	1	1226700			42571	298	28189	28306	43120	43120					0.009464481156101101
TEREQKNSL	9	Unmodified	_TEREQKNSL_					0	0	0		BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	BICD2|p.R258C|1|0.42|ENSG00000185963|chr9:92720590-92720590|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.7861938476562	2	552.785827	1103.5571	1.1439	0.00063231	0.3867	0.00021376	1.5306	0.00084608	552.7858913879135	15.015	0.11754	15.015	14.964	15.082	0					5	4	2	0	0	0	0.11635	1	3283	3283		59.931	13.959	1	152050			42572	298	28189	28306	43121	43121					0.009464481156101101
TERFVSEML	9	Unmodified	_TERFVSEML_					0	0	0		ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2788696289062	2	556.276249	1110.53795	3.5339	0.0019658	-2.0363	-0.0011328	1.4975	0.00083304	556.276114684593	41.812	0.13912	41.812	41.739	41.878	0					7	4	2	0	0	0	0.30257	1	16642	16642		51.193	8.7966	1	61524			42573	3098	28190	28307	43122	43122					-0.01290224499643955
TERIEKERM	9	Unmodified	_TERIEKERM_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	398.2109680175781	3	397.876529	1190.60776	0.42313	0.00016835	-0.41652	-0.00016573	0.0066061	2.6284E-06	398.2107080683619	17.626	0.16773	17.626	17.567	17.735	0					5	3	2	0	0	0	0.25761	1	5282	5282		54.722	18.276	1	127410			42574	1639	28191	28308	43123	43123					0.02007654168960471
TERPQPQTL	9	Unmodified	_TERPQPQTL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2863159179688	2	535.285463	1068.55637	0.59623	0.00031915	0.16894	9.0434E-05	0.76518	0.00040959	535.285587092929	23.47	0.20611	23.47	23.361	23.568	0					14	7	3	0	0	0	0.31937	1	6791	6791		41.427	3.6151	1	189090			42575	2299	28192	28309	43124	43124					0.024836534665837462
TERPQPQTL	9	Unmodified	_TERPQPQTL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2860107421875	2	535.285463	1068.55637	0.17631	9.4377E-05	0.23645	0.00012657	0.41276	0.00022095	535.2854620225993	23.776	0.28465	23.776	23.633	23.918	0					15	6	3	0	0	0	0.15593	1	7907	7907		68.846	21.189	1	1326800			42576	2299	28192	28309	43125	43125					0.024836534665837462
TERPQPQTL	9	Unmodified	_TERPQPQTL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2857055664062	2	535.285463	1068.55637	-0.58363	-0.00031241	3.38	0.0018092	2.7963	0.0014968	535.28618259202	23.497	0.17926	23.497	23.395	23.574	0					15	6	3	0	0	0	0.42175	1	7070	7070		32.751	0	1	180440			42577	2299	28192	28309	43126	43126					0.024836534665837462
TERPQPQTL	9	Unmodified	_TERPQPQTL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.28564453125	2	535.285463	1068.55637	3.3665	0.001802	-2.2436	-0.001201	1.1229	0.00060106	535.2837293588354	23.7	0.26102	23.7	23.552	23.813	0					13	5	3	0	0	0	0.033932	1	8063	8063		89.029	36.092	1	1625800			42578	2299	28192	28309	43127	43127					0.024836534665837462
TERQKVHCL	9	Carbamidomethyl (C)	_TERQKVHC(Carbamidomethyl (C))L_	TERQKVHC(1)L		TERQKVHC(61)L		0	1	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	390.8731384277344	3	390.873118	1169.59753	-0.11547	-4.5135E-05	-0.0051844	-2.0265E-06	-0.12066	-4.7161E-05	390.8731534751684	16.937	0.17193	16.937	16.846	17.018	0					8	4	2	0	0	0	0.20551	1	4695	4695		60.972	14.515	1	928000			42579	2622	28193	28310	43128	43128	106				0.019510912343776
TERQKVHCL	9	Carbamidomethyl (C)	_TERQKVHC(Carbamidomethyl (C))L_	TERQKVHC(1)L		TERQKVHC(63)L		0	1	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.8058471679688	2	585.806039	1169.59753	-1.7327	-0.001015	1.8003	0.0010546	0.067578	3.9588E-05	585.806675128515	16.72	0.061943	16.72	16.679	16.741	0					4	2	2	0	0	0	0.18605	1	4024	4024		63.306	9.9548	1	55441			42580	2622	28193	28310	43129	43129	106				0.019510912343776
TERRKQNEK	9	Unmodified	_TERRKQNEK_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.8874206542969	3	396.886304	1187.63708	3.1664	0.0012567	-0.073007	-2.8976E-05	3.0934	0.0012277	396.88624614717696	14.178	0.7702	14.178	14.073	14.844	0					28	15	4	0	0	0	0.40353	1	3457	3457		41.427	41.427	1	1770800	+		42581	14626	28194	28311	43130	43130					0.05076934509452258
TERSKATP	8	Unmodified	_TERSKATP_					0	0	0		HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA	HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant	HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.24029541015625	2	445.240524	888.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.639	1	25.639	25.139	26.139	0								0	0	0	1.7419	1	9125	9125		42.864	0.38981	1				42582	1969	28195	28312	43131	43131					0.017800238579980032
TERYMACKK	9	Carbamidomethyl (C)	_TERYMAC(Carbamidomethyl (C))KK_	TERYMAC(1)KK		TERYMAC(74)KK		0	1	0		ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2;nc|ENSG00000291237|P04179-3|SOD2	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.79052734375	2	593.789001	1185.56345	3.1734	0.0018844	-0.42843	-0.0002544	2.745	0.00163	593.7887378760131	31.148	0.80563	31.148	30.946	31.751	0					36	16	5	0	0	0	0.12239	1	11600	11600		74.255	10.048	1	8441300			42583	10481	28196	28313	43132	43132	424				-0.021910732488777285
TESCLSTRKK	10	Unmodified	_TESCLSTRKK_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant;CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant;CEP162|p.R1099Efs*46|2|0.27|ENSG00000135315|chr6:84152880-84152881|-/T|frameshift_variant;CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.8043823242188	2	576.805705	1151.59686	-1.5963	-0.00092074	-1.0427	-0.00060145	-2.639	-0.0015222	576.8049600699258	17.594	0.11406	17.594	17.526	17.64	0					8	3	3	0	0	0	0.38179	1	4411	4411		37.812	0	1	375070			42584	480	28197	28314	43133	43133					0.02712251794673648
TESDAQRTMYP	11	Unmodified	_TESDAQRTMYP_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	649.7893676757812	2	649.787709	1297.56087	2.8364	0.001843	-0.22905	-0.00014883	2.6073	0.0016942	649.7875351266654	15.389	0.24878	15.389	15.33	15.579	0					10	5	3	0	0	0	0.27467	1	4060	4060		65.465	1.9315	1	655670			42585	11515	28198	28315	43134	43134					-0.07601250172820073
TESDTAVRL	9	Unmodified	_TESDTAVRL_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2557678222656	2	496.256371	990.498189	-0.034747	-1.7243E-05	-1.2517	-0.00062118	-1.2865	-0.00063842	496.25579117435524	28.309	0.20845	28.309	28.19	28.399	0					10	4	3	0	0	0	0.032181	1	10339	10339		112.41	53.629	1	132290			42586	1417	28199	28316	43135	43135					0.0025597182128649365
TESDTAVRL	9	Unmodified	_TESDTAVRL_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.25628662109375	2	496.256371	990.498189	-0.0015037	-7.4623E-07	0.064513	3.2015E-05	0.06301	3.1269E-05	496.2563889457921	28.091	0.12858	28.091	28.003	28.132	0					5	3	2	0	0	0	0.22823	1	9283	9283		60.118	24.5	1	35718			42587	1417	28199	28316	43136	43136					0.0025597182128649365
TESDTAVRL	9	Unmodified	_TESDTAVRL_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2560119628906	2	496.256371	990.498189	-0.68191	-0.0003384	0.079419	3.9412E-05	-0.60249	-0.00029899	496.2564751826134	28.22	0.26629	28.22	28.109	28.375	0					11	5	3	0	0	0	0.032181	1	10209	10209		101.25	34.823	1	457540			42588	1417	28199	28316	43137	43137					0.0025597182128649365
TESGKTLLL	9	Unmodified	_TESGKTLLL_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.28118896484375	2	481.281857	960.549162	0.40648	0.00019563	-0.94145	-0.0004531	-0.53497	-0.00025747	481.28145032907685	35.184	0.17029	35.184	35.087	35.257	0					6	4	2	0	0	0	0.35021	1	13177	13177		45.972	1.8554	1	58788			42589	1956	28200	28317	43138	43138					0.06730920866152701
TESGLNVTL	9	Unmodified	_TESGLNVTL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.2483215332031	2	467.248015	932.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.869	1	43.869	43.369	44.369	0								0	0	0	0.0047356	1	17126	17126		115.49	30.579	1				42590	6170	28201	28318	43139	43139					0.01253470935353107
TESKQTLNI	9	Unmodified	_TESKQTLNI_					0	0	0			REV__KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant	REV__KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2799682617188	2	517.279846	1032.54514	0.36434	0.00018846	-0.084234	-4.3572E-05	0.2801	0.00014489	517.279659185007	22.021	0.15419	22.021	21.942	22.097	0					6	4	2	0	0	0	0.1424	1	6166	6166		69.628	13.194	1	180460	+		42591	16272	28202	28319	43140	43140					0.030168313724288964
TESKTVIKV	9	Unmodified	_TESKTVIKV_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.53778076171875	3	335.53773	1003.59136	-0.70274	-0.0002358	0.46537	0.00015615	-0.23737	-7.9646E-05	335.5379475559872	25.59	0.17503	25.59	25.52	25.695	0					11	5	3	0	0	0	0.15163	1	7980	7980		67.494	9.2637	1	144170			42592	314	28203	28320	43141	43141					0.08970896274524875
TESNHDTAL	9	Unmodified	_TESNHDTAL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000506930.2_1_5:139884419-139889237:+|nuORF;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2222900390625	2	494.222528	986.430503	-1.6183	-0.00079979	1.2165	0.00060121	-0.40182	-0.00019859	494.22310154242393	18.989	0.132	18.989	18.925	19.057	0					6	4	2	0	0	0	0.35021	1	5068	5068		45.972	6.9508	1	144310			42593	3724;154	28204	28321	43142	43142					-0.06325478109533833
TESNHDTAL	9	Unmodified	_TESNHDTAL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000506930.2_1_5:139884419-139889237:+|nuORF;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2223815917969	2	494.222528	986.430503	-0.75263	-0.00037196	0.20445	0.00010104	-0.54818	-0.00027092	494.2227930760439	19.206	0.16531	19.206	19.148	19.313	0					8	3	3	0	0	0	0.11898	1	6041	6041		75.043	18.322	1	535780			42594	3724;154	28204	28321	43143	43143					-0.06325478109533833
TESPAALKL	9	Unmodified	_TESPAALKL_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2684631347656	2	465.26875	928.522947	-0.52405	-0.00024382	0.29905	0.00013914	-0.225	-0.00010468	465.2687926058381	34.079	0.42854	34.079	33.807	34.235	0					16	12	2	0	0	0	0.099922	1	12031	12031		79.451	8.1553	1	78476			42595	3670	28205	28322	43144	43144					0.055826516946467564
TESPAKFAL	9	Unmodified	_TESPAKFAL_					0	0	0		ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2607421875	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.241	1	36.241	35.741	36.741	0								0	0	0	0.15451	1	13653	13653		58.782	3.8874	1				42596	5042	28206	28323	43145	43145					0.02454365177618456
TESPENVAL	9	Unmodified	_TESPENVAL_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2375793457031	2	480.237647	958.460741	0.49416	0.00023732	-1.0564	-0.00050734	-0.56228	-0.00027003	480.2371565417847	36.639	0.19971	36.639	36.563	36.762	0					7	5	2	0	0	0	0.35021	1	13861	13861		45.972	0	1	139580			42597	3047	28207	28324	43146	43146					-0.020151194443315035
TESPENVAL	9	Unmodified	_TESPENVAL_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2374572753906	2	480.237647	958.460741	0.67307	0.00032323	-1.4931	-0.00071706	-0.82006	-0.00039382	480.2366743677845	36.603	0.30795	36.603	36.502	36.809	0					13	9	2	0	0	0	0.21263	1	14279	14279		60.118	17.644	1	146330			42598	3047	28207	28324	43147	43147					-0.020151194443315035
TESPVRTL	8	Unmodified	_TESPVRTL_					0	0	0		ENSG00000134285|ENST00000550765|FKBP11;ENST00000553027.1_1_12:49319073-49319295:-|nuORF;ENST00000551694.5_1_12:49318004-49319277:-|nuORF;nc|ENSG00000134285|Q9NYL4-2|FKBP11	ENSG00000134285|ENST00000550765|FKBP11	ENSG00000134285|ENST00000550765|FKBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7505187988281	2	451.750724	901.486896	0.55817	0.00025216	-0.53206	-0.00024036	0.026113	1.1797E-05	451.7503344646953	26.405	0.31679	26.405	26.264	26.581	0					14	10	2	0	0	0	0.46013	1	8013	8013		64.207	14.766	1	55715			42599	3909	28208	28325	43148	43148					0.03221194517800541
TESPVRTL	8	Unmodified	_TESPVRTL_					0	0	0		ENSG00000134285|ENST00000550765|FKBP11;ENST00000553027.1_1_12:49319073-49319295:-|nuORF;ENST00000551694.5_1_12:49318004-49319277:-|nuORF;nc|ENSG00000134285|Q9NYL4-2|FKBP11	ENSG00000134285|ENST00000550765|FKBP11	ENSG00000134285|ENST00000550765|FKBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7508544921875	2	451.750724	901.486896	-0.40861	-0.00018459	0.76755	0.00034674	0.35894	0.00016215	451.75115755678297	26.662	0.72123	26.662	26.349	27.07	0					28	14	3	0	0	0	0.64746	1	9385	9385		41.427	0.64845	1	2552500			42600	3909	28208	28325	43149	43149					0.03221194517800541
TESSARLQAGP	11	Unmodified	_TESSARLQAGP_					0	0	0		ENST00000431561.7_1_16:3283645-3284759:-|nuORF;ENST00000575630.1_1_16:3283648-3283846:-|nuORF	ENST00000431561.7_1_16:3283645-3284759:-|nuORF	ENST00000431561.7_1_16:3283645-3284759:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7861938476562	2	558.785827	1115.5571	0.52543	0.00029361	0.13082	7.3101E-05	0.65626	0.00036671	558.7861240396742	24.053	0.22538	24.053	23.949	24.174	0					12	5	3	0	0	0	0.60656	1	8074	8074		36.447	0.82846	1	312080			42601	9503	28209	28326	43150	43150					0.003944481156167967
TESSKATNVC	10	Unmodified	_TESSKATNVC_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.239990234375	2	520.239864	1038.46517	1.4274	0.00074261	0.11415	5.9385E-05	1.5416	0.000802	520.2399524610458	17.858	0.19261	17.858	17.816	18.009	0					6	4	2	0	0	0	0.45669	1	5130	5130		50.034	8.6069	1	225540			42602	5040	28210	28327	43151	43151					-0.052519782930630754
TESSQSFVAV	10	Unmodified	_TESSQSFVAV_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.75732421875	2	527.756204	1053.49785	0.66964	0.00035341	-0.15872	-8.3765E-05	0.51092	0.00026964	527.7563971372646	39.088	0.24877	39.088	38.981	39.23	0					8	5	2	0	0	0	0.41384	1	15431	15431		54.722	3.3869	1	70072			42603	7647	28211	28328	43152	43152					-0.026754478985594687
TESSQSFVAV	10	Unmodified	_TESSQSFVAV_					0	0	0		PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7569580078125	2	527.756204	1053.49785	1.6286	0.00085951	-0.7725	-0.00040769	0.85611	0.00045182	527.7558565006241	39.071	0.20508	39.071	38.967	39.173	0					10	4	3	0	0	0	0.38194	1	15425	15425		58.23	12.258	1	197830			42604	7647	28211	28328	43153	43153					-0.026754478985594687
TESTARVEL	9	Unmodified	_TESTARVEL_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2650451660156	2	503.264196	1004.51384	0.57147	0.0002876	-0.67307	-0.00033873	-0.1016	-5.1129E-05	503.26373641156215	27.741	0.15054	27.741	27.642	27.792	0					8	4	2	0	0	0	0.078509	1	8577	8577		85.161	21.627	1	128820			42605	22500	28212	28329	43154	43154					0.011762583383301717
TESTARVEL	9	Unmodified	_TESTARVEL_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2639465332031	2	503.264196	1004.51384	0.74048	0.00037266	-0.95931	-0.00048279	-0.21883	-0.00011013	503.263758252902	28.007	0.37858	28.007	27.924	28.303	0					21	9	3	0	0	0	0.047855	1	9843	9843		96.034	24.738	1	1197800			42606	22500	28212	28329	43155	43155					0.011762583383301717
TESTARVEL	9	Unmodified	_TESTARVEL_					0	0	0		SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2642517089844	2	503.264196	1004.51384	0.12951	6.5179E-05	-0.39681	-0.0001997	-0.2673	-0.00013452	503.2640189113868	27.794	0.26345	27.794	27.701	27.964	0					12	6	3	0	0	0	0.11411	1	9147	9147		76.17	21.405	1	226920			42607	22500	28212	28329	43156	43156					0.011762583383301717
TESTPITAV	9	Unmodified	_TESTPITAV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.74334716796875	2	459.742565	917.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.101	1	35.101	34.601	35.601	0								0	0	0	0.10121	1	11862	11862		71.296	2.5089	1				42608	6864	28213	28330	43157	43157					0.008540685610341825
TETEPSKTV	9	Unmodified	_TETEPSKTV_					0	0	0		MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.S870P|1|0.03|ENSG00000148773|chr10:128109232-128109232|A/G|missense_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2507019042969	2	496.250754	990.486955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.349	1	18.349	17.849	18.849	0								0	0	0	0.27521	1	4770	4770		40.058	4.9061	1				42609	4850	28214	28331	43158	43158					-0.008668502728482963
TETGAGFMDTV	11	Unmodified	_TETGAGFMDTV_					0	0	0			REV__nc|ENSG00000108242|P33260-2|CYP2C18	REV__nc|ENSG00000108242|P33260-2|CYP2C18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.7470092773438	2	564.747521	1127.48049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.776	1	33.776	33.276	34.276	0								0	0	0	0.45614	1	12955	12955		24.519	3.5723	1		+		42610	13870	28215	28332	43159	43159					-0.07815111495892779
TETGILKGV	9	Unmodified	_TETGILKGV_					0	0	0		ENST00000538277.1_1_11:62603381-62607042:-|nuORF;ENST00000453708.6_1_11:62603082-62607042:-|nuORF;ENST00000540620.5_1_11:62602715-62607042:-|nuORF;ENST00000541930.5_1_11:62601897-62607060:-|nuORF;nc|ENSG00000133316|Q6RFH5-2|WDR74;ENSG00000133316|ENST00000278856|WDR74	ENST00000538277.1_1_11:62603381-62607042:-|nuORF	ENST00000538277.1_1_11:62603381-62607042:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2682800292969	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.615	1	33.615	33.115	34.115	0								0	0	0	0.27025	1	12447	12447		40.778	4.3314	1				42611	3849	28216	28333	43160	43160					0.06134651694662807
TETGILKGV	9	Unmodified	_TETGILKGV_					0	0	0		ENST00000538277.1_1_11:62603381-62607042:-|nuORF;ENST00000453708.6_1_11:62603082-62607042:-|nuORF;ENST00000540620.5_1_11:62602715-62607042:-|nuORF;ENST00000541930.5_1_11:62601897-62607060:-|nuORF;nc|ENSG00000133316|Q6RFH5-2|WDR74;ENSG00000133316|ENST00000278856|WDR74	ENST00000538277.1_1_11:62603381-62607042:-|nuORF	ENST00000538277.1_1_11:62603381-62607042:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2681579589844	2	459.26875	916.522947	-0.4455	-0.00020461	0.12888	5.919E-05	-0.31662	-0.00014542	459.26860810037965	33.509	0.21789	33.509	33.399	33.616	0					10	4	3	0	0	0	0.17854	1	12758	12758		64.207	2.0999	1	198560			42612	3849	28216	28333	43161	43161					0.06134651694662807
TETHVERVL	9	Unmodified	_TETHVERVL_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2946166992188	2	542.293288	1082.57202	1.8487	0.0010025	-0.84435	-0.00045789	1.0044	0.00054465	542.292821843204	24.244	0.19653	24.244	24.144	24.34	0					8	4	3	0	0	0	0.070005	1	8124	8124		88.177	11.403	1	288300			42613	1556	28217	28334	43162	43162					0.03403939983604687
TETHVERVL	9	Unmodified	_TETHVERVL_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2936401367188	2	542.293288	1082.57202	1.8874	0.0010235	-0.76052	-0.00041242	1.1269	0.00061109	542.2928111962551	24.227	0.14657	24.227	24.131	24.277	0					8	3	3	0	0	0	0.36135	1	8140	8140		45.022	13.388	1	442570			42614	1556	28217	28334	43163	43163					0.03403939983604687
TETHVERVL	9	Unmodified	_TETHVERVL_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.2930297851562	2	542.293288	1082.57202	4.8488	0.0026295	-4.4632	-0.0024203	0.38568	0.00020915	542.2905026388471	23.952	0.12883	23.952	23.912	24.04	0					7	4	2	0	0	0	0.40353	1	7267	7267		41.427	13.544	1	68363			42615	1556	28217	28334	43164	43164					0.03403939983604687
TETHVERVL	9	Unmodified	_TETHVERVL_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2936401367188	2	542.293288	1082.57202	1.2343	0.00066937	-0.27963	-0.00015164	0.95471	0.00051773	542.2930083898884	24.172	0.21614	24.172	24.062	24.278	0					11	4	3	0	0	0	0.070005	1	8435	8435		88.177	38.641	1	620720			42616	1556	28217	28334	43165	43165					0.03403939983604687
TETHVERVL	9	Unmodified	_TETHVERVL_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.86456298828125	3	361.864617	1082.57202	0.48892	0.00017692	-0.67519	-0.00024433	-0.18627	-6.7404E-05	361.86437940039747	24.188	0.31413	24.188	24.079	24.393	0					9	6	2	0	0	0	0.59802	1	8421	8421		29.17	9.1396	1	676850			42617	1556	28217	28334	43166	43166					0.03403939983604687
TETHVERVL	9	Unmodified	_TETHVERVL_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7957153320312	2	542.293288	1082.57202	2.0958	0.0011365	-0.77539	-0.00042049	1.3204	0.00071603	542.2927699883257	24.014	0.12666	24.014	23.937	24.063	0					5	3	2	0	0	0	0.3269	1	7413	7413		47.96	2.0076	1	89678			42618	1556	28217	28334	43167	43167					0.03403939983604687
TETHVERVL	9	Unmodified	_TETHVERVL_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.2939453125	2	542.293288	1082.57202	0.62845	0.0003408	0.52689	0.00028573	1.1553	0.00062653	542.2935811873579	24.139	0.26729	24.139	24.028	24.295	0					11	5	3	0	0	0	0.12834	1	8295	8295		72.879	16.158	1	617620			42619	1556	28217	28334	43168	43168					0.03403939983604687
TETIAKLV	8	Unmodified	_TETIAKLV_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7654724121094	2	437.765843	873.517133	0.61222	0.00026801	-1.3936	-0.00061006	-0.78137	-0.00034206	437.7652165759104	35.347	0.19921	35.347	35.268	35.467	0					11	5	3	0	0	0	0.35045	1	13243	13243		76.774	7.9873	1	317010			42620	7554	28218	28335	43169	43169					0.07531553182991502
TETIERLQ	8	Unmodified	_TETIERLQ_					0	0	0		ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2672424316406	2	495.266739	988.518924	-0.40264	-0.00019941	0.72627	0.0003597	0.32363	0.00016028	495.2672854368769	30.561	0.35939	30.561	30.475	30.835	0					22	8	4	0	0	0	0.27635	1	11018	11018		90.37	5.4543	1	1819700			42621	2566	28219	28336	43170	43170					0.024205622009503713
TETIIKAKD	9	Unmodified	_TETIIKAKD_					0	0	0		tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.29779052734375	2	509.792589	1017.57063	0.94982	0.00048421	0.48831	0.00024894	1.4381	0.00073315	509.79258337600425	24.576	0.76455	24.576	24.265	25.03	0					44	18	4	0	0	0	0.50858	1	8405	8405		31.53	2.3803	1	2418200			42622	22629	28220	28337	43171	43171					0.06254305894844947
TETKTTVEL	9	Unmodified	_TETKTTVEL_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2741394042969	2	511.274229	1020.53391	0.018334	9.3739E-06	-0.49692	-0.00025406	-0.47859	-0.00024469	511.274091752652	27.365	0.22045	27.365	27.255	27.476	0					7	4	2	0	0	0	0.18416	1	9800	9800		63.534	22.756	1	304930			42623	4487	28221	28338	43172	43172					0.0244600927828742
TETLPMLLL	9	Unmodified	_TETLPMLLL_					0	0	0			REV__ENST00000374882.7_1_6:32808812-32809388:-|nuORF	REV__ENST00000374882.7_1_6:32808812-32809388:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7984619140625	2	515.796286	1029.57802	3.2621	0.0016826	0.77995	0.00040229	4.042	0.0020849	515.7966885091895	32.446	0.21878	32.446	32.338	32.557	0					11	4	3	0	0	0	0.33044	1	12249	12249		31.955	0	1	801570	+		42624	18698	28222	28339	43173	43173					0.06441322170917374
TETNVYFKL	9	Unmodified	_TETNVYFKL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7915649414062	2	557.792589	1113.57063	3.4802	0.0019412	-3.6331	-0.0020265	-0.15291	-8.5293E-05	557.790631056238	42.893	0.18112	42.893	42.802	42.983	0					9	6	2	0	0	0	0.21263	1	17125	17125		60.118	8.7828	1	89902			42625	3674	28223	28340	43174	43174					0.01838305894852965
TETPLRQY	8	Unmodified	_TETPLRQY_					0	0	0			REV__CNOT3|p.S667P|1|0.18|ENSG00000088038|chr19:54152961-54152961|T/C|missense_variant	REV__CNOT3|p.S667P|1|0.18|ENSG00000088038|chr19:54152961-54152961|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5091247558594	3	336.510063	1006.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.288	1	25.288	24.788	25.788	0								0	0	0	1.7419	1	7849	7849		40.573	13.88	1		+		42626	12533	28224	28341	43175	43175					0.005365795465081646
TETPPRPL	8	Unmodified	_TETPPRPL_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.7531433105469	2	455.753267	909.491981	0.72149	0.00032882	-0.77131	-0.00035153	-0.049823	-2.2707E-05	455.7526832535983	38.682	0.20427	38.682	38.596	38.801	0					17	7	3	0	0	0	0.49216	1	15180	15180		60.972	0	1	270660	+		42627	14859	28225	28342	43176	43176					0.03361498380422745
TETQEKNTL	9	Unmodified	_TETQEKNTL_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752;ENST00000415070.1_1_2:236791008-236791086:-|nuORF	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2672729492188	2	532.266936	1062.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.781	1	18.781	18.281	19.281	0								0	0	0	0.0057146	1	5826	5826		154.12	40.707	1				42628	1161	28226	28343	43177	43177					-0.009440628698484943
TETSVSSA	8	Unmodified	_TETSVSSA_					0	0	0			REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F	REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.182373046875	2	391.18234	780.350128	0.43536	0.0001703	-0.19218	-7.5178E-05	0.24317	9.5125E-05	391.1823061795076	18.284	1.688	18.284	18.022	19.71	0					51	34	3	0	0	0	0.68754	1	5572	5572		35.201	0	1	16432000	+		42629	14710	28227	28344	43178	43178					-0.04883339432558387
TETTKFEKL	9	Unmodified	_TETTKFEKL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589224.1_1_19:14034393-14038165:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.20068359375	3	366.201007	1095.58119	0.47321	0.00017329	-0.51722	-0.00018941	-0.044006	-1.6115E-05	366.2006923333315	25.026	0.14188	25.026	24.92	25.062	0					6	4	2	0	0	0	0.56424	1	7471	7471		40.058	15.539	1	126940			42630	390	28228	28345	43179	43179					0.03722288549283803
TETTKFEKL	9	Unmodified	_TETTKFEKL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589224.1_1_19:14034393-14038165:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7981567382812	2	548.797872	1095.58119	1.2533	0.00068779	-0.081561	-4.4761E-05	1.1717	0.00064303	548.7977915645224	25.02	0.14049	25.02	24.946	25.087	0					11	4	3	0	0	0	0.11411	1	7463	7463		76.17	14.062	1	278970			42631	390	28228	28345	43180	43180					0.03722288549283803
TETTKFEKL	9	Unmodified	_TETTKFEKL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589224.1_1_19:14034393-14038165:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7982788085938	2	548.797872	1095.58119	0.50404	0.00027662	0.39457	0.00021654	0.89861	0.00049315	548.7980347739873	25.283	0.31452	25.283	25.181	25.496	0					16	7	4	0	0	0	0.019258	1	8627	8627		123.21	43.496	1	1870200			42632	390	28228	28345	43181	43181					0.03722288549283803
TETTKFEKL	9	Unmodified	_TETTKFEKL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589224.1_1_19:14034393-14038165:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7982788085938	2	548.797872	1095.58119	-0.29973	-0.00016449	0.77737	0.00042662	0.47764	0.00026213	548.7983254110076	25.053	0.17401	25.053	24.984	25.158	0					7	5	2	0	0	0	0.24334	1	7751	7751		56.434	17.181	1	112200			42633	390	28228	28345	43182	43182					0.03722288549283803
TETTKFEKL	9	Unmodified	_TETTKFEKL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589224.1_1_19:14034393-14038165:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7982177734375	2	548.797872	1095.58119	0.26985	0.00014809	0.55799	0.00030623	0.82784	0.00045432	548.7980817459786	25.282	0.2705	25.282	25.171	25.442	0					13	5	4	0	0	0	0.032383	1	8965	8965		106.68	42.476	1	971640			42634	390	28228	28345	43183	43183					0.03722288549283803
TETTKFEKL	9	Unmodified	_TETTKFEKL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589224.1_1_19:14034393-14038165:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.20098876953125	3	366.201007	1095.58119	-0.15431	-5.6507E-05	-0.012603	-4.6151E-06	-0.16691	-6.1122E-05	366.20099533785117	25.221	0.42056	25.221	25.11	25.531	0					13	8	3	0	0	0	0.48389	1	8813	8813		58.23	31.183	1	812590			42635	390	28228	28345	43184	43184					0.03722288549283803
TETTKFEKL	9	Unmodified	_TETTKFEKL_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589224.1_1_19:14034393-14038165:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.798583984375	2	548.797872	1095.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.217	1	25.217	24.717	25.717	0								0	0	0	0.0011674	1	8801	8801		126.24	43.492	1				42636	390	28228	28345	43185	43185					0.03722288549283803
TETVHIFKL	9	Unmodified	_TETVHIFKL_					0	0	0		nc|ENSG00000157954|Q9Y4P8-3|WIPI2;ENST00000466014.5_1_7:5232953-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-2|WIPI2;nc|ENSG00000157954|Q9Y4P8-4|WIPI2;nc|ENSG00000157954|Q9Y4P8-5|WIPI2;nc|ENSG00000157954|Q9Y4P8-6|WIPI2;ENSG00000157954|ENST00000288828|WIPI2;ENST00000488359.1_1_7:5256722-5265562:+|nuORF;ENST00000589459.5_1_17:66423364-66453609:-|nuORF;nc|ENSG00000070540|Q5MNZ9-2|WIPI1;ENSG00000070540|ENST00000262139|WIPI1	nc|ENSG00000157954|Q9Y4P8-3|WIPI2	nc|ENSG00000157954|Q9Y4P8-3|WIPI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.3112182617188	2	544.310949	1086.60735	1.9706	0.0010726	-0.19958	-0.00010864	1.7711	0.00096401	544.3110268678903	37.639	0.27707	37.639	37.417	37.694	0					12	8	2	0	0	0	0.22837	1	14736	14736		58.23	17.657	1	73748			42637	5238	28229	28346	43186	43186					0.06750602511442594
TETVLRQAI	9	Unmodified	_TETVLRQAI_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7982788085938	2	515.798206	1029.58186	0.2194	0.00011317	0.438	0.00022592	0.6574	0.00033908	515.7981582025818	32.232	0.12972	32.232	32.165	32.295	0					9	6	2	0	0	0	0.41113	1	10397	10397		40.778	0	1	69696			42638	6014	28230	28347	43187	43187					0.06825127989009161
TETVLRQAI	9	Unmodified	_TETVLRQAI_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.79833984375	2	515.798206	1029.58186	0.032599	1.6815E-05	0.25535	0.00013171	0.28795	0.00014852	515.7983391649456	32.5	0.21341	32.5	32.369	32.583	0					12	5	3	0	0	0	0.24334	1	11925	11925		56.434	4.906	1	447650			42639	6014	28230	28347	43188	43188					0.06825127989009161
TETVLRQAI	9	Unmodified	_TETVLRQAI_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7988891601562	2	515.798206	1029.58186	-0.085295	-4.3995E-05	1.3366	0.00068943	1.2513	0.00064543	515.7989109256239	32.274	0.16188	32.274	32.209	32.371	0					10	7	2	0	0	0	0.46194	1	10761	10761		36.447	1.2947	1	164320			42640	6014	28230	28347	43189	43189					0.06825127989009161
TETVLRQAI	9	Unmodified	_TETVLRQAI_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7985229492188	2	515.798206	1029.58186	1.4376	0.00074151	-0.66975	-0.00034545	0.76784	0.00039605	515.7978502448998	32.454	0.25105	32.454	32.359	32.61	0					16	6	4	0	0	0	0.28897	1	12362	12362		51.193	4.7359	1	468000			42641	6014	28230	28347	43190	43190					0.06825127989009161
TEVDAKPLE	9	Unmodified	_TEVDAKPLE_					0	0	0		tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2608337402344	2	501.261122	1000.50769	-0.96992	-0.00048618	-1.424	-0.00071379	-2.3939	-0.0012	501.2604644186971	39.903	0.10689	39.903	39.848	39.955	0					11	6	2	0	0	0	0.36892	1	13390	13390		44.377	3.599	1	47389			42642	22738	28231	28348	43191	43191					0.00745740106822268
TEVGEKIAL	9	Unmodified	_TEVGEKIAL_					0	0	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2734680175781	2	480.274032	958.533512	0.048932	2.3501E-05	-0.69526	-0.00033392	-0.64633	-0.00031041	480.27367524714776	33.736	0.36143	33.736	33.555	33.917	0					28	14	3	0	0	0	0.27123	1	10976	10976		53.089	7.1167	1	491480			42643	3666	28232	28349	43192	43192					0.05258634349092972
TEVGKLIK	8	Unmodified	_TEVGKLIK_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.28131103515625	2	444.28166	886.548768	3.209	0.0014257	-3.3546	-0.0014904	-0.14558	-6.468E-05	444.2801211069102	23.331	0.074348	23.331	23.283	23.357	0					4	2	2	0	0	0	0.61938	1	7001	7001		45.952	1.8352	1	32127			42644	5756	28233	28350	43193	43193					0.10095545936951567
TEVGPRFEL	9	Unmodified	_TEVGPRFEL_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF;ENST00000475074.1_1_2:131103527-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2774658203125	2	524.277106	1046.53966	1.6263	0.00085261	-1.1607	-0.00060852	0.46557	0.00024409	524.2767242080231	41.2	0.30935	41.2	41.016	41.326	0					16	7	3	0	0	0	0.085655	1	16358	16358		82.75	15.257	1	169310			42645	4101	28234	28351	43194	43194					0.01825152580613576
TEVGPRFEL	9	Unmodified	_TEVGPRFEL_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF;ENST00000475074.1_1_2:131103527-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.27685546875	2	524.277106	1046.53966	3.4271	0.0017968	-2.6869	-0.0014087	0.74017	0.00038805	524.2756561706559	41.182	0.34808	41.182	41.091	41.439	0					12	8	2	0	0	0	0.14578	1	16353	16353		68.846	14.07	1	206170			42646	4101	28234	28351	43195	43195					0.01825152580613576
TEVGSVSEV	9	Unmodified	_TEVGSVSEV_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.7243957519531	2	453.724372	905.434192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.015	1	32.015	31.515	32.515	0								0	0	0	0.1633	1	11713	11713		56.721	12.604	1				42647	1630	28235	28352	43196	43196					-0.02230808335650636
TEVGVGAITL	10	Unmodified	_TEVGVGAITL_					0	0	0		tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.273681640625	2	480.274032	958.533512	-0.30331	-0.00014567	-0.47312	-0.00022723	-0.77643	-0.0003729	480.27382472459004	31.781	0.49314	31.781	31.555	32.048	0					34	14	3	0	0	0	0.34667	1	10979	10979		62.107	2.1766	1	428320			42648	22574	28236	28353	43197	43197					0.05258634349092972
TEVIFKAL	8	Unmodified	_TEVIFKAL_					0	0	0		ENSG00000136816|ENST00000259339|TOR1B;ENST00000486372.1_1_9:132565440-132566668:+|nuORF	ENSG00000136816|ENST00000259339|TOR1B	ENSG00000136816|ENST00000259339|TOR1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.7760314941406	2	460.776211	919.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.782	1	42.782	42.282	43.282	0								0	0	0	1.7419	1	16779	16779		45.952	5.3793	1				42649	4110	28237	28354	43198	43198					0.07488143562670757
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7638854980469	2	485.763832	969.513111	-0.020503	-9.9597E-06	0.30048	0.00014596	0.27998	0.000136	485.76405156597707	30.286	0.13531	30.286	30.227	30.362	0					8	4	2	0	0	0	0.047412	1	9633	9633		96.19	24.895	1	107970			42650	6932;7798	28238	28355	43199	43199					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7636413574219	2	485.763832	969.513111	0.67074	0.00032582	-0.95384	-0.00046334	-0.2831	-0.00013752	485.7633371909549	30.571	0.60555	30.571	30.487	31.092	0					20	14	2	0	0	0	0.0062933	1	11046	11046		152.47	61.694	1	788110			42651	6932;7798	28238	28355	43200	43200					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.763671875	2	485.763832	969.513111	-1.2381	-0.00060145	1.0892	0.00052912	-0.14889	-7.2327E-05	485.7641661307727	30.354	0.20502	30.354	30.247	30.452	0					10	6	2	0	0	0	0.047412	1	9951	9951		96.19	32.884	1	195810			42652	6932;7798	28238	28355	43201	43201					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7635498046875	2	485.763832	969.513111	0.65026	0.00031587	-1.4027	-0.00068138	-0.75243	-0.0003655	485.7631735776474	30.555	0.33348	30.555	30.448	30.782	0					13	7	2	0	0	0	0.011031	1	11443	11443		138.83	48.049	1	1233300			42653	6932;7798	28238	28355	43202	43202					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7634582519531	2	485.763832	969.513111	-0.24648	-0.00011973	-0.14745	-7.1625E-05	-0.39393	-0.00019136	485.7635229512782	30.344	0.19069	30.344	30.251	30.442	0					6	4	2	0	0	0	0.17854	1	10332	10332		64.207	16.55	1	198240			42654	6932;7798	28238	28355	43203	43203					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7637634277344	2	485.763832	969.513111	-2.9145	-0.0014158	2.0014	0.00097221	-0.91312	-0.00044356	485.7648591243902	30.327	0.15254	30.327	30.278	30.431	0					5	3	2	0	0	0	0.14603	1	10326	10326		68.787	15.435	1	147120			42655	6932;7798	28238	28355	43204	43204					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7637634277344	2	485.763832	969.513111	0.83845	0.00040729	-1.3586	-0.00065995	-0.52013	-0.00025266	485.7631552061518	30.52	0.30554	30.52	30.425	30.731	0					11	6	2	0	0	0	0.01768	1	11319	11319		125.81	53.937	1	1311200			42656	6932;7798	28238	28355	43205	43205					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.S149Yfs*51|1|0.05|ENSG00000203326|chr19:53381024-53381025|-/ATTGC|frameshift_variant;ZNF611|p.K221Nfs*6|1|0.35|ENSG00000213020|chr19:52706392-52706392|T/-|frameshift_variant;ZNF468|p.K232Nfs*4|1|0.3|ENSG00000204604|chr19:52841598-52841598|T/-|frameshift_variant;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant;ENSG00000204604|ENST00000595646|ZNF468;nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000182986|ENST00000682928|ZNF320;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7640075683594	2	485.763832	969.513111	2.5031	0.0012159	-2.8791	-0.0013986	-0.37597	-0.00018263	485.76261876320535	30.513	0.205	30.513	30.458	30.663	0					10	4	3	0	0	0	0.012915	1	11314	11314		134.81	44.034	1	648820			42657	6932;7798	28238	28355	43206	43206					0.027134636893038078
TEVIQVKP	8	Unmodified	_TEVIQVKP_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.27105712890625	2	457.271293	912.528032	0.7218	0.00033006	-1.2351	-0.00056477	-0.51328	-0.00023471	457.2706607858516	29.154	0.46625	29.154	29.007	29.473	0					25	10	3	0	0	0	0.63077	1	10774	10774		44.117	1.7207	1	1216200			42658	7200	28239	28356	43207	43207					0.06826955557289693
TEVKAVKL	8	Unmodified	_TEVKAVKL_					0	0	0		ENST00000574828.1_1_17:80584850-80606216:-|nuORF;ENST00000583470.1_1_17:30439049-30439436:-|nuORF;ENSG00000141580|ENST00000392325|WDR45B	ENST00000574828.1_1_17:80584850-80606216:-|nuORF	ENST00000574828.1_1_17:80584850-80606216:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.28131103515625	2	444.28166	886.548768	-0.2155	-9.5742E-05	-0.26758	-0.00011888	-0.48307	-0.00021462	444.28149044418006	23.57	0.26634	23.57	23.462	23.728	0					11	5	3	0	0	0	0.25873	1	8130	8130		96.19	16.739	1	880580			42659	4460	28240	28357	43208	43208					0.10095545936940198
TEVKAVKL	8	Unmodified	_TEVKAVKL_					0	0	0		ENST00000574828.1_1_17:80584850-80606216:-|nuORF;ENST00000583470.1_1_17:30439049-30439436:-|nuORF;ENSG00000141580|ENST00000392325|WDR45B	ENST00000574828.1_1_17:80584850-80606216:-|nuORF	ENST00000574828.1_1_17:80584850-80606216:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2814025878906	2	444.28166	886.548768	0.43603	0.00019372	-1.3697	-0.00060854	-0.93368	-0.00041482	444.2811374106991	23.375	0.10805	23.375	23.31	23.418	0					4	2	2	0	0	0	0.46013	1	7129	7129		64.207	5.4253	1	68488			42660	4460	28240	28357	43209	43209					0.10095545936940198
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.3505859375	2	561.350074	1120.6856	1.2759	0.00071623	-0.63809	-0.00035819	0.63782	0.00035804	561.3496564359235	23.025	0.3213	23.025	22.938	23.26	0					29	10	4	0	0	0	0.061298	1	6582	6582		85.161	30.438	1	799060			42661	4596	28241	28358	43210	43210					0.13008035096640924
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.3505249023438	2	561.350074	1120.6856	0.4785	0.00026861	0.11512	6.4623E-05	0.59362	0.00033323	561.3501464360224	23.349	0.6656	23.349	23.21	23.875	0					31	15	3	0	0	0	0.026848	1	7705	7705		107.01	21.847	1	5068500			42662	4596	28241	28358	43211	43211					0.13008035096640924
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.3514404296875	2	561.350074	1120.6856	-0.4201	-0.00023582	0.87197	0.00048948	0.45187	0.00025366	561.3505123938843	23.075	0.22394	23.075	22.987	23.211	0					17	7	3	0	0	0	0.063171	1	6869	6869		74.255	31.859	1	275780			42663	4596	28241	28358	43212	43212					0.13008035096640924
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.3504028320312	2	561.350074	1120.6856	-0.0003776	-2.1196E-07	0.79357	0.00044547	0.7932	0.00044526	561.3504668801374	23.238	0.46632	23.238	23.128	23.595	0					22	9	4	0	0	0	0.0055674	1	7990	7990		139.97	43.937	1	1716000			42664	4596	28241	28358	43213	43213					0.13008035096640924
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.5690002441406	3	374.569142	1120.6856	-0.12323	-4.6159E-05	-0.06199	-2.322E-05	-0.18522	-6.9378E-05	374.56908717901547	23.126	0.4129	23.126	23.033	23.446	0					25	9	4	0	0	0	0.026538	1	6997	6997		112.41	54.181	1	638430			42665	4596	28241	28358	43214	43214					0.13008035096640924
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.5692138671875	3	374.569142	1120.6856	0.73959	0.00027703	-0.83386	-0.00031234	-0.094268	-3.531E-05	374.56888023236695	23.226	1.0137	23.226	23.117	24.13	0					52	20	5	0	0	0	0.04067	1	7854	7854		98.582	27.766	1	15388000			42666	4596	28241	28358	43215	43215					0.13008035096640924
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7307434082031	2	461.731143	921.447733	0.10552	4.8722E-05	-1.0473	-0.00048358	-0.94179	-0.00043485	461.73095614598805	24.861	0.33985	24.861	24.757	25.096	0					24	10	4	0	0	0	0.24622	1	7397	7397		108.09	38.995	1	632880			42667	5177	28242	28359	43216	43216					-0.01613273828070305
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.73095703125	2	461.731143	921.447733	0.74302	0.00034307	-1.4287	-0.00065967	-0.68567	-0.00031659	461.7307000299343	25.155	0.6153	25.155	25.06	25.675	0					34	14	5	0	0	0	0.2451	1	8549	8549		110.12	16.924	1	4586100			42668	5177	28242	28359	43217	43217					-0.01613273828070305
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7307434082031	2	461.731143	921.447733	-0.14868	-6.8652E-05	-0.85453	-0.00039456	-1.0032	-0.00046321	461.7308372025304	25.115	0.41787	25.115	25.008	25.426	0					20	8	3	0	0	0	0.23895	1	8883	8883		134.81	17.907	1	4558700			42669	5177	28242	28359	43218	43218					-0.01613273828070305
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.7308654785156	2	461.731143	921.447733	-0.12668	-5.8494E-05	-0.46486	-0.00021464	-0.59154	-0.00027313	461.731032951371	24.977	0.19657	24.977	24.876	25.072	0					14	4	4	0	0	0	0.25143	1	7859	7859		98.629	29.536	1	694210			42670	5177	28242	28359	43219	43219					-0.01613273828070305
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.73095703125	2	461.731143	921.447733	-0.4646	-0.00021452	-0.47852	-0.00022095	-0.94312	-0.00043547	461.73110581662144	25.068	0.61935	25.068	24.963	25.582	0					32	12	5	0	0	0	0.2451	1	8717	8717		110.12	5.3733	1	8811200			42671	5177	28242	28359	43220	43220					-0.01613273828070305
TEVLFDQHK	9	Unmodified	_TEVLFDQHK_					0	0	0			REV__CCDC171|p.A411D|1|0.31|ENSG00000164989|chr9:15695251-15695251|C/A|missense_variant	REV__CCDC171|p.A411D|1|0.31|ENSG00000164989|chr9:15695251-15695251|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7866821289062	2	558.787838	1115.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.865	1	23.865	23.365	24.365	0								0	0	0	0.28996	1	7354	7354		37.159	0.71236	1		+		42672	12360	28243	28360	43221	43221					0.007965376093125087
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2870788574219	2	499.287474	996.560395	0.29267	0.00014612	-0.64619	-0.00032263	-0.35352	-0.00017651	499.2872590168084	25.189	0.19256	25.189	25.119	25.312	0					8	5	2	0	0	0	0.082776	1	7559	7559		77.318	34.921	1	170400			42673	4497	28244	28361	43222	43222					0.061977429602734446
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2874450683594	2	499.287474	996.560395	0.67609	0.00033756	-0.97152	-0.00048507	-0.29543	-0.0001475	499.2870324527224	25.5	0.25985	25.5	25.415	25.675	0					10	6	2	0	0	0	0.046074	1	8731	8731		80.455	34.482	1	1726500			42674	4497	28244	28361	43223	43223					0.061977429602734446
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2872619628906	2	499.287474	996.560395	-1.0571	-0.00052778	0.89088	0.00044481	-0.16619	-8.2977E-05	499.28790860817844	25.247	0.19109	25.247	25.189	25.38	0					13	6	3	0	0	0	0.029571	1	7827	7827		104.06	29.802	1	293840			42675	4497	28244	28361	43224	43224					0.061977429602734446
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2875061035156	2	499.287474	996.560395	0.86116	0.00042996	-1.1154	-0.00055692	-0.25427	-0.00012695	499.2869141834857	25.5	0.26057	25.5	25.392	25.653	0					12	5	4	0	0	0	0.0034376	1	9045	9045		150.36	51.78	1	2160400			42676	4497	28244	28361	43225	43225					0.061977429602734446
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2873840332031	2	499.287474	996.560395	0.1663	8.303E-05	-0.14772	-7.3754E-05	0.018579	9.2763E-06	499.2873348781524	25.301	0.19135	25.301	25.252	25.443	0					6	4	2	0	0	0	0.032383	1	8035	8035		79.713	33.74	1	251280			42677	4497	28244	28361	43226	43226					0.061977429602734446
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2871398925781	2	499.287474	996.560395	-2.1731	-0.001085	2.29	0.0011434	0.11689	5.8363E-05	499.288619545836	25.335	0.14672	25.335	25.239	25.386	0					5	3	2	0	0	0	0.082776	1	8027	8027		67.494	28.241	1	216250			42678	4497	28244	28361	43227	43227					0.061977429602734446
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.28729248046875	2	499.287474	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.434	1	25.434	24.934	25.934	0								0	0	0	0.0020833	1	8904	8904		104.06	41.949	1				42679	4497	28244	28361	43228	43228					0.061977429602734446
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.28717041015625	2	499.287474	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.413	1	25.413	24.913	25.913	0								0	0	0	0.00038087	1	8894	8894		109.48	35.223	1				42680	4497	28244	28361	43229	43229					0.061977429602734446
TEVLTIKNLVD	11	Unmodified	_TEVLTIKNLVD_					0	0	0		nc|ENSG00000126903|P09131-2|SLC10A3	nc|ENSG00000126903|P09131-2|SLC10A3	nc|ENSG00000126903|P09131-2|SLC10A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.5751037597656	3	415.574732	1243.70237	1.0355	0.00043031	-0.18075	-7.5116E-05	0.85471	0.0003552	415.5747093787225	24.372	0.60666	24.372	24.262	24.869	0					21	12	2	0	0	0	0.23231	1	8389	8389		70.412	3.1973	1	2079300			42681	11512	28245	28362	43230	43230					0.09026491191957575
TEVNKLQKG	9	Unmodified	_TEVNKLQKG_					0	0	0		IFT74|p.K212Nfs*20|1|0.08|ENSG00000096872|chr9:27009064-27009064|A/-|frameshift_variant;nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74	IFT74|p.K212Nfs*20|1|0.08|ENSG00000096872|chr9:27009064-27009064|A/-|frameshift_variant	IFT74|p.K212Nfs*20|1|0.08|ENSG00000096872|chr9:27009064-27009064|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.529296875	3	339.529346	1015.56621	0.22568	7.6624E-05	-0.29592	-0.00010048	-0.070248	-2.3851E-05	339.5292451612163	19.632	0.12053	19.632	19.552	19.673	0					5	3	2	0	0	0	0.30951	1	5120	5120		49.442	5.0644	1	212850			42682	1920	28246	28363	43231	43231					0.059048414719427456
TEVQKNQVL	9	Unmodified	_TEVQKNQVL_					0	0	0		TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant;ENSG00000137364|ENST00000309983|TPMT	TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant	TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.795654296875	2	529.795663	1057.57677	0.11404	6.042E-05	0.4412	0.00023375	0.55524	0.00029417	529.7958611716916	24.306	0.32583	24.306	24.079	24.405	0					17	7	3	0	0	0	0.15163	1	8174	8174		67.494	7.3754	1	1196600			42683	4162	28247	28364	43232	43232					0.05028824126384279
TEVQKNQVL	9	Unmodified	_TEVQKNQVL_					0	0	0		TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant;ENSG00000137364|ENST00000309983|TPMT	TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant	TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7945556640625	2	529.795663	1057.57677	1.7343	0.00091882	-2.2521	-0.0011931	-0.51778	-0.00027432	529.7944896485304	24.254	0.41529	24.254	23.995	24.41	0					26	8	5	0	0	0	0.085655	1	8454	8454		82.75	0	1	2862600			42684	4162	28247	28364	43233	43233					0.05028824126384279
TEVQKNQVL	9	Unmodified	_TEVQKNQVL_					0	0	0		TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant;ENSG00000137364|ENST00000309983|TPMT	TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant	TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.7910766601562	2	529.795663	1057.57677	1.2157	0.00064406	-1.64	-0.00086886	-0.42432	-0.0002248	529.7949383560432	24.085	0.17983	24.085	23.958	24.138	0					12	4	3	0	0	0	0.078509	1	7429	7429		85.161	0	1	337000			42685	4162	28247	28364	43234	43234					0.05028824126384279
TEVQLQQKV	9	Unmodified	_TEVQLQQKV_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.8040771484375	2	536.803488	1071.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.991	1	26.991	26.491	27.491	0								0	0	0	0.045272	1	8269	8269		52.937	23.787	1				42686	6416	28248	28365	43235	43235					0.05949110643427957
TEVQLQQKV	9	Unmodified	_TEVQLQQKV_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8038330078125	2	536.803488	1071.59242	0.20566	0.0001104	1.7111	0.00091853	1.9168	0.0010289	536.8034652432316	27.221	0.58605	27.221	26.956	27.542	0					30	14	3	0	0	0	0.0071744	1	9483	9483		132.76	11.889	1	578750			42687	6416	28248	28365	43236	43236					0.05949110643427957
TEVQLQQKV	9	Unmodified	_TEVQLQQKV_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8040161132812	2	536.803488	1071.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.223	1	27.223	26.723	27.723	0								0	0	0	0.0053097	1	9838	9838		109.48	26.728	1				42688	6416	28248	28365	43237	43237					0.05949110643427957
TEVQLQQKV	9	Unmodified	_TEVQLQQKV_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.80322265625	2	536.803488	1071.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.025	1	27.025	26.525	27.525	0								0	0	0	0.051298	1	8786	8786		69.628	16.691	1				42689	6416	28248	28365	43238	43238					0.05949110643427957
TEVRQKQQL	9	Unmodified	_TEVRQKQQL_					0	0	0		EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;EPSTI1|p.R138Efs*5|1|0.36|ENSG00000133106|chr13:42963332-42963332|T/-|frameshift_variant	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.3198852539062	2	565.319837	1128.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.183	1	17.183	16.683	17.683	0								0	0	0	0.0095889	1	5058	5058		110.12	41.333	1				42690	3838	28249	28366	43239	43239					0.06595317766277731
TEVRQKQQL	9	Unmodified	_TEVRQKQQL_					0	0	0		EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;EPSTI1|p.R138Efs*5|1|0.36|ENSG00000133106|chr13:42963332-42963332|T/-|frameshift_variant	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	EPSTI1|p.L289Sfs*24|1|0.42|ENSG00000133106|chr13:42895092-42895093|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.321044921875	2	565.319837	1128.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.972	1	16.972	16.472	17.472	0								0	0	0	0.10826	1	4136	4136		69.628	18.292	1				42691	3838	28249	28366	43240	43240					0.06595317766277731
TEVRQLLE	8	Unmodified	_TEVRQLLE_					0	0	0			REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	REV__CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.27740478515625	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.96	1	25.96	25.46	26.46	0								0	0	0	1.7419	1	8105	8105		51.335	0	1		+		42692	12421	28250	28367	43241	43241					0.04585152580625618
TEVRVANEL	9	Unmodified	_TEVRVANEL_					0	0	0		ENST00000466449.5_1_18:77690306-77703530:-|nuORF;nc|ENSG00000122490|Q8N2U9-3|SLC66A2;ENST00000351365.7_1_18:77663978-77709700:-|nuORF;nc|ENSG00000122490|Q8N2U9-2|SLC66A2;ENSG00000122490|ENST00000397778|SLC66A2	ENST00000466449.5_1_18:77690306-77703530:-|nuORF	ENST00000466449.5_1_18:77690306-77703530:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7813110351562	2	515.780013	1029.54547	1.5134	0.0007806	1.7853	0.00092082	3.2987	0.0017014	515.7809028955755	30.592	0.40392	30.592	30.376	30.78	0					20	8	3	0	0	0	0.061298	1	11322	11322		91.265	11.553	1	614340			42693	3267	28251	28368	43242	43242					0.03188251092274186
TEVTKLQLI	9	Unmodified	_TEVTKLQLI_					0	0	0			REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.8813781738281	3	348.881497	1043.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.895	1	34.895	34.395	35.395	0								0	0	0	0.30504	1	13039	13039		34.173	1.3601	1		+		42694	21969	28252	28369	43243	43243					0.10259469308630287
TEVTPVTGASL	11	Unmodified	_TEVTPVTGASL_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7891235351562	2	537.787504	1073.56045	0.69565	0.00037411	1.1096	0.00059674	1.8053	0.00097085	537.7880312499427	39.447	0.1956	39.447	39.348	39.543	0					5	4	2	0	0	0	0.35529	1	15581	15581		56.434	8.4743	1	50560			42695	5378	28253	28370	43244	43244					0.026616981696406583
TEWEKVAQL	9	Unmodified	_TEWEKVAQL_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2899169921875	2	552.290214	1102.56587	1.6024	0.00088496	-0.94173	-0.00052011	0.66062	0.00036486	552.2893906440728	40.806	0.30639	40.806	40.756	41.063	0					10	8	2	0	0	0	0.19605	1	16078	16078		62.107	10.772	1	151660			42696	6555	28254	28371	43245	43245					0.018694217520987877
TEWEKVAQL	9	Unmodified	_TEWEKVAQL_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.2908935546875	2	552.290214	1102.56587	1.818	0.0010041	-0.94604	-0.00052249	0.87196	0.00048158	552.2896300363727	40.798	0.32833	40.798	40.702	41.03	0					11	5	3	0	0	0	0.070005	1	16220	16220		88.177	26.07	1	128440			42697	6555	28254	28371	43246	43246					0.018694217520987877
TEWHSSLN	8	Unmodified	_TEWHSSLN_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant;CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100053158-100088872:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;CCDC180|p.S1054Lfs*19|1|0.44|ENSG00000197816|chr9:97354591-97354591|T/-|frameshift_variant;CCDC180|p.L667Tfs*8|1|0.13|ENSG00000197816|chr9:97330353-97330354|-/A|frameshift_variant	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.22125244140625	2	487.222331	972.430109	-0.70056	-0.00034133	-2.1928	-0.0010684	-2.8933	-0.0014097	487.221518185008	22.492	0.1161	22.492	22.434	22.55	0					6	2	3	0	0	0	0.67394	1	7632	7632		37.159	1.5408	1	456820			42698	9029	28255	28372	43247	43247					-0.05720853038712903
TEWLDGKHV	9	Unmodified	_TEWLDGKHV_					0	0	0		ENSG00000196262|ENST00000468812|PPIA;nc|ENSG00000196262|P62937-2|PPIA;ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000424692.3_1_4:124983938-124984139:+|nuORF;ENST00000414143.1_1_20:25348913-25349114:-|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF;nc|ENSG00000289549|F5H284|PPIAL4D;nc|ENSG00000288867|A0A0B4J2A2|PPIAL4C;ENSG00000236334|ENST00000419275|PPIAL4G;ENSG00000263353|ENST00000577856|PPIAL4A;ENSG00000270339|ENST00000584068|PPIAL4H;ENSG00000271567|ENST00000581164|PPIAL4E;ENSG00000279782|ENST00000581138|PPIAL4F;ENST00000462517.1_1_3:57927876-57927939:+|nuORF	ENSG00000196262|ENST00000468812|PPIA	ENSG00000196262|ENST00000468812|PPIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.18548583984375	3	362.185579	1083.53491	0.47964	0.00017372	-0.58399	-0.00021151	-0.10435	-3.7796E-05	362.1853002466018	29.77	0.36733	29.77	29.682	30.05	0					13	9	3	0	0	0	0.38666	1	10672	10672		42.864	10.052	1	559430			42699	7344	28256	28373	43248	43248					-0.0035173156215932977
TEWLDGKHV	9	Unmodified	_TEWLDGKHV_					0	0	0		ENSG00000196262|ENST00000468812|PPIA;nc|ENSG00000196262|P62937-2|PPIA;ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000424692.3_1_4:124983938-124984139:+|nuORF;ENST00000414143.1_1_20:25348913-25349114:-|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF;nc|ENSG00000289549|F5H284|PPIAL4D;nc|ENSG00000288867|A0A0B4J2A2|PPIAL4C;ENSG00000236334|ENST00000419275|PPIAL4G;ENSG00000263353|ENST00000577856|PPIAL4A;ENSG00000270339|ENST00000584068|PPIAL4H;ENSG00000271567|ENST00000581164|PPIAL4E;ENSG00000279782|ENST00000581138|PPIAL4F;ENST00000462517.1_1_3:57927876-57927939:+|nuORF	ENSG00000196262|ENST00000468812|PPIA	ENSG00000196262|ENST00000468812|PPIA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.1855163574219	3	362.185579	1083.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.551	1	29.551	29.051	30.051	0								0	0	0	0.3119	1	9955	9955		32.812	3.6629	1				42700	7344	28256	28373	43249	43249					-0.0035173156215932977
TEWLDGKHV	9	Unmodified	_TEWLDGKHV_					0	0	0		ENSG00000196262|ENST00000468812|PPIA;nc|ENSG00000196262|P62937-2|PPIA;ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000424692.3_1_4:124983938-124984139:+|nuORF;ENST00000414143.1_1_20:25348913-25349114:-|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF;nc|ENSG00000289549|F5H284|PPIAL4D;nc|ENSG00000288867|A0A0B4J2A2|PPIAL4C;ENSG00000236334|ENST00000419275|PPIAL4G;ENSG00000263353|ENST00000577856|PPIAL4A;ENSG00000270339|ENST00000584068|PPIAL4H;ENSG00000271567|ENST00000581164|PPIAL4E;ENSG00000279782|ENST00000581138|PPIAL4F;ENST00000462517.1_1_3:57927876-57927939:+|nuORF	ENSG00000196262|ENST00000468812|PPIA	ENSG00000196262|ENST00000468812|PPIA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7748413085938	2	542.774731	1083.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.553	1	29.553	29.053	30.053	0								0	0	0	0.17415	1	9956	9956		47.657	19.775	1				42701	7344	28256	28373	43250	43250					-0.0035173156215932977
TEWLDGKHVV	10	Unmodified	_TEWLDGKHVV_					0	0	0		ENSG00000196262|ENST00000468812|PPIA;nc|ENSG00000196262|P62937-2|PPIA;ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000424692.3_1_4:124983938-124984139:+|nuORF;ENST00000414143.1_1_20:25348913-25349114:-|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF	ENSG00000196262|ENST00000468812|PPIA	ENSG00000196262|ENST00000468812|PPIA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.20849609375	3	395.208384	1182.60332	3.1737	0.0012543	-2.6177	-0.0010345	0.55604	0.00021975	395.20740484994974	33.837	0.14731	33.837	33.793	33.94	0					7	3	3	0	0	0	0.59277	1	12916	12916		35.152	5.982	1	247250			42702	7344	28257	28374	43251	43251					0.019325130176866878
TEWRAARL	8	Unmodified	_TEWRAARL_					0	0	0			REV__ENST00000411637.6_2_9:134000990-134001116:+|nuORF	REV__ENST00000411637.6_2_9:134000990-134001116:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.7778625488281	2	501.777608	1001.54066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.362	1	32.362	31.862	32.862	0								0	0	0	1.7419	1	10458	10458		44.117	1.2525	1		+		42703	19006	28259	28375	43252	43252					0.03995411740174859
TEYETQVKV	9	Unmodified	_TEYETQVKV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7800903320312	2	548.779679	1095.5448	1.8443	0.0010121	-1.7431	-0.00095657	0.10121	5.5541E-05	548.7783711780529	29.248	0.37195	29.248	29.046	29.418	0					15	9	3	0	0	0	0.013878	1	10422	10422		132.76	53.045	1	729110			42704	3204	28260	28376	43253	43253					0.0008541165257156536
TEYETQVKV	9	Unmodified	_TEYETQVKV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7799072265625	2	548.779679	1095.5448	0.38333	0.00021036	-0.12719	-6.9799E-05	0.25614	0.00014056	548.7793254305097	29.023	0.18257	29.023	28.908	29.091	0					15	7	3	0	0	0	0.032383	1	9405	9405		106.68	40.254	1	210560			42705	3204	28260	28376	43254	43254					0.0008541165257156536
TEYETQVKV	9	Unmodified	_TEYETQVKV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.77978515625	2	548.779679	1095.5448	1.7655	0.00096889	-2.0101	-0.0011031	-0.24453	-0.00013419	548.778558120644	29.261	0.18811	29.261	29.146	29.334	0					8	4	2	0	0	0	0.026848	1	10816	10816		112.11	47.9	1	1057900			42706	3204	28260	28376	43255	43255					0.0008541165257156536
TEYETQVKV	9	Unmodified	_TEYETQVKV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7799682617188	2	548.779679	1095.5448	1.1602	0.0006367	-0.60196	-0.00033035	0.55825	0.00030635	548.7792400698182	29.066	0.18156	29.066	28.967	29.148	0					9	5	2	0	0	0	0.25761	1	9722	9722		54.722	5.5116	1	111680			42707	3204	28260	28376	43256	43256					0.0008541165257156536
TEYETQVKV	9	Unmodified	_TEYETQVKV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7794189453125	2	548.779679	1095.5448	-1.5088	-0.00082801	0.4745	0.00026039	-1.0343	-0.00056762	548.7798378689733	29.051	0.2452	29.051	28.867	29.112	0					8	6	2	0	0	0	0.3269	1	9730	9730		47.96	3.8427	1	131080			42708	3204	28260	28376	43257	43257					0.0008541165257156536
TEYETQVKV	9	Unmodified	_TEYETQVKV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.780029296875	2	548.779679	1095.5448	1.851	0.0010158	-1.1793	-0.00064719	0.67166	0.00036859	548.7789034768572	29.198	0.26597	29.198	28.992	29.258	0					9	5	3	0	0	0	0.032383	1	10678	10678		106.68	49.962	1	1427500			42709	3204	28260	28376	43258	43258					0.0008541165257156536
TEYRRQVQSL	10	Unmodified	_TEYRRQVQSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	640.34130859375	2	640.341301	1278.66805	0.27386	0.00017537	-0.51247	-0.00032815	-0.2386	-0.00015279	640.3408941121248	23.392	0.23302	23.392	23.341	23.574	0					11	5	3	0	0	0	0.62235	1	7143	7143		31.53	0	1	349820			42710	1132	28261	28377	43259	43259					0.0398608782370502
TEYTFTHL	8	Unmodified	_TEYTFTHL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2436218261719	2	506.242732	1010.47091	-0.25234	-0.00012774	0.93234	0.00047199	0.68	0.00034425	506.243289943606	38.99	0.16319	38.99	38.886	39.049	0					6	3	2	0	0	0	0.3961	1	15364	15364		71.296	23.38	1	177730			42711	1541	28262	28378	43260	43260					-0.03390511719089773
TEYVNRQFM	9	Unmodified	_TEYVNRQFM_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.280029296875	2	594.279323	1186.54409	0.027133	1.6124E-05	0.69766	0.00041461	0.7248	0.00043073	594.2800280581118	34.274	0.17212	34.274	34.201	34.373	0					10	4	3	0	0	0	0.17854	1	13201	13201		64.207	28.589	1	99970			42712	3989	28263	28379	43261	43261					-0.041717062681300376
TFAERLIGT	9	Unmodified	_TFAERLIGT_					0	0	0			REV__ENST00000484560.1_1_3:146234424-146234930:-|nuORF	REV__ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2764587402344	2	504.279649	1006.54475	-0.83328	-0.00042021	-1.3413	-0.00067639	-2.1746	-0.0010966	504.2790374943632	37.209	0.44245	37.209	37.042	37.484	0					37	24	2	0	0	0	0.33044	1	12583	12583		47.657	1.6851	1	109390	+		42713	17165	28264	28380	43262	43262					0.041734564432545085
TFAKKKSTH	9	Unmodified	_TFAKKKSTH_					0	0	0			REV__RPL3|p.K124T|1|0.3|ENSG00000100316|chr22:39316836-39316836|T/G|missense_variant	REV__RPL3|p.K124T|1|0.3|ENSG00000100316|chr22:39316836-39316836|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.8692932128906	3	349.869703	1046.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.027	1	14.027	13.527	14.527	0								0	0	0	0.37233	1	2906	2906		19.104	0.84144	1		+		42714	21476	28265	28381	43263	43263					0.06584851571483341
TFARNSVLV	9	Unmodified	_TFARNSVLV_					0	0	0		ENSG00000182986|ENST00000682928|ZNF320	ENSG00000182986|ENST00000682928|ZNF320	ENSG00000182986|ENST00000682928|ZNF320	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1938781738281	3	336.194186	1005.56073	-0.70262	-0.00023622	0.66347	0.00022305	-0.039149	-1.3162E-05	336.19430690010466	18.036	0.61138	18.036	17.855	18.466	0					32	20	2	0	0	0	0.61124	1	4644	4644		12.812	2.2249	1	128320			42715	6932	28266	28382	43264	43264					0.05817162680136789
TFATRQVPK	9	Unmodified	_TFATRQVPK_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.T371Nfs*32|2|0.26|ENSG00000171320|chr8:27787975-27787976|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.86962890625	3	349.869703	1046.58728	0.69827	0.0002443	-0.84661	-0.0002962	-0.14834	-5.1901E-05	349.8694543414379	14.299	0.16562	14.299	14.184	14.349	0					11	4	3	0	0	0	0.4966	1	3446	3446		32.812	0	1	294650			42716	6292	28267	28383	43265	43265					0.06584851571460604
TFAYHKDMP	9	Unmodified	_TFAYHKDMP_					0	0	0		ENSG00000169902|ENST00000304842|TPST1;TPST1|p.F162Lfs*3|1|0.44|ENSG00000169902|chr7:66240908-66240908|T/-|frameshift_variant	ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.2561645507812	2	555.257859	1108.50117	0.12249	6.8013E-05	-1.2386	-0.00068775	-1.1161	-0.00061974	555.2566358448572	29.34	0.13022	29.34	29.31	29.44	0					10	5	3	0	0	0	0.54267	1	9564	9564		27.882	3.3631	1	43511			42717	6195	28268	28384	43266	43266					-0.04874476325539945
TFDGKTYTF	9	Unmodified	_TFDGKTYTF_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2569580078125	2	540.25584	1078.49713	1.9377	0.0010469	-0.37442	-0.00020228	1.5633	0.00084457	540.255795737024	37.851	0.22231	37.851	37.767	37.989	0					14	9	2	0	0	0	0.055856	1	14372	14372		93.195	30.217	1	109520			42718	11716	28269	28385	43267	43267					-0.03898242547643349
TFDGKTYTF	9	Unmodified	_TFDGKTYTF_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7579956054688	2	540.25584	1078.49713	0.66678	0.00036023	0.2699	0.00014582	0.93668	0.00050605	540.2563812820171	37.766	0.35533	37.766	37.565	37.92	0					11	7	3	0	0	0	0.22837	1	14782	14782		58.23	10.27	1	141790			42719	11716	28269	28385	43268	43268					-0.03898242547643349
TFDNVLPGK	9	Unmodified	_TFDNVLPGK_					0	0	0		NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7686462402344	2	495.766374	989.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.847	1	33.847	33.347	34.347	0								0	0	0	0.099216	1	12909	12909		71.877	11.759	1				42720	2223	28270	28386	43269	43269					0.023017675519099612
TFELLSPTGVL	11	Unmodified	_TFELLSPTGVL_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.8294677734375	2	588.829172	1175.64379	3.186	0.001876	-2.2088	-0.0013006	0.97711	0.00057535	588.8276787260086	34.758	0.55854	34.758	34.506	35.065	0					26	11	4	0	0	0	0.5473	1	13367	13367		40.778	4.3314	1	589220			42721	1561	28271	28387	43270	43270					0.06299434617471888
TFESSHYLL	9	Unmodified	_TFESSHYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7692260742188	2	548.769114	1095.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.239	1	41.239	40.739	41.739	0								0	0	0	0.14517	1	16390	16390		60.972	11.53	1				42722	6043	28272	28388	43271	43271					-0.02026553656287433
TFEYLQSF	8	Unmodified	_TFEYLQSF_					0	0	0		ENSG00000010810|ENST00000354650|FYN;nc|ENSG00000010810|P06241-3|FYN;ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000010810|P06241-2|FYN;ENST00000491885.6_1_6:111982944-111997736:-|nuORF	ENSG00000010810|ENST00000354650|FYN	ENSG00000010810|ENST00000354650|FYN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7431030273438	2	517.745108	1033.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.996	1	30.996	30.496	31.496	0								0	0	0	1.7419	1	9926	9926		65.803	0	1				42723	1041	28273	28389	43272	43272					-0.039736275763289086
TFFRGSLE	8	Unmodified	_TFFRGSLE_					0	0	0		ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7457275390625	2	478.745442	955.476331	-0.26353	-0.00012616	0.075704	3.6243E-05	-0.18782	-8.9919E-05	478.745619312163	39.219	0.162	39.219	39.151	39.313	0					9	5	2	0	0	0	0.49216	1	14914	14914		60.972	3.1607	1	192170			42724	5279	28274	28390	43273	43273					-0.003187881366216061
TFGGLGSK	8	Unmodified	_TFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.7084655761719	2	383.708328	765.402104	0.75244	0.00028872	-0.50904	-0.00019532	0.24341	9.3398E-05	383.70811908316256	25.517	0.18685	25.517	25.466	25.653	0					7	4	2	0	0	0	0.57171	1	8738	8738		52.937	15.778	1	130970			42725	3401	28275	28391	43274	43274					0.010018687718570618
TFGGLGSK	8	Unmodified	_TFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	383.7082824707031	2	383.708328	765.402104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.285	1	25.285	24.785	25.785	0								0	0	0	1.7419	1	7847	7847		24.203	3.7209	1				42726	3401	28275	28391	43275	43275					0.010018687718570618
TFGGLGSK	8	Unmodified	_TFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.70831298828125	2	383.708328	765.402104	0.1973	7.5705E-05	-0.5285	-0.00020279	-0.3312	-0.00012708	383.70813165503336	25.511	0.21023	25.511	25.409	25.62	0					10	4	3	0	0	0	0.70598	1	9052	9052		32.812	4.9302	1	391610			42727	3401	28275	28391	43276	43276					0.010018687718570618
TFGGLGSK	8	Unmodified	_TFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.7082824707031	2	383.708328	765.402104	-0.57155	-0.00021931	0.26915	0.00010327	-0.3024	-0.00011603	383.7084150150673	25.426	0.26672	25.426	25.315	25.582	0					10	5	3	0	0	0	0.74405	1	8913	8913		27.882	4.8398	1	312570			42728	3401	28275	28391	43277	43277					0.010018687718570618
TFGGRGGGG	9	Unmodified	_TFGGRGGGG_					0	0	0			REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|9|3|sense	REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|9|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.18548583984375	2	383.185552	764.35655	0.34705	0.00013299	-0.55912	-0.00021425	-0.21207	-8.1263E-05	383.18534311548086	14.228	0.34105	14.228	14.167	14.508	0					14	7	3	0	0	0	0.50461	1	3654	3654		31.955	10.253	1	357790	+		42729	12148	28276	28392	43278	43278					-0.03505356690516237
TFGKKKGP	8	Unmodified	_TFGKKKGP_					0	0	0		ENSG00000149806|ENST00000529639|FAU;FAU|p.A131T|1|0.24|ENSG00000149806|chr11:65120692-65120692|C/T|missense_variant	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.76129150390625	2	431.760895	861.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.223	1	13.223	12.723	13.723	0								0	0	0	1.7419	1	2584	2584		58.782	23.164	1				42730	4908	28277	28393	43279	43279					0.07094409968283344
TFGKKKGP	8	Unmodified	_TFGKKKGP_					0	0	0		ENSG00000149806|ENST00000529639|FAU;FAU|p.A131T|1|0.24|ENSG00000149806|chr11:65120692-65120692|C/T|missense_variant	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.76068115234375	2	431.760895	861.507237	0.20123	8.6885E-05	0.53711	0.0002319	0.73834	0.00031879	431.76090281335246	13.409	0.22657	13.409	13.241	13.468	0					19	13	2	0	0	0	0.58597	1	2683	2683		51.335	17.82	1	42322			42731	4908	28277	28393	43280	43280					0.07094409968283344
TFGKKKGP	8	Unmodified	_TFGKKKGP_					0	0	0		ENSG00000149806|ENST00000529639|FAU;FAU|p.A131T|1|0.24|ENSG00000149806|chr11:65120692-65120692|C/T|missense_variant	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.7610778808594	2	431.760895	861.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.411	1	13.411	12.911	13.911	0								0	0	0	1.7419	1	2691	2691		38.806	3.6054	1				42732	4908	28277	28393	43281	43281					0.07094409968283344
TFGKKKGP	8	Unmodified	_TFGKKKGP_					0	0	0		ENSG00000149806|ENST00000529639|FAU;FAU|p.A131T|1|0.24|ENSG00000149806|chr11:65120692-65120692|C/T|missense_variant	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7609558105469	2	431.760895	861.507237	-0.47413	-0.00020471	0.49165	0.00021228	0.017526	7.5671E-06	431.7610531874708	13.533	0.72212	13.533	13.209	13.931	0					25	15	3	0	0	0	0.41701	1	3112	3112		68.787	24.67	1	547200			42733	4908	28277	28393	43282	43282					0.07094409968283344
TFGKKKGPNA	10	Unmodified	_TFGKKKGPNA_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.3011474609375	2	524.300916	1046.58728	0.55813	0.00029263	1.156	0.00060608	1.7141	0.00089871	524.3014349241067	13.957	0.11476	13.957	13.899	14.013	0					12	5	3	0	0	0	0.10583	1	2941	2941		72.879	21.544	1	85588			42734	4908	28278	28394	43283	43283					0.06584851571483341
TFGKKKGPNA	10	Unmodified	_TFGKKKGPNA_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.3014526367188	2	524.300916	1046.58728	1.7837	0.00093518	-3.8592	-0.0020234	-2.0756	-0.0010882	524.2989855010725	14.187	0.34649	14.187	14.074	14.42	0					18	7	3	0	0	0	0.01242	1	3631	3631		112.11	47.9	1	1201800			42735	4908	28278	28394	43284	43284					0.06584851571483341
TFGKKKGPNA	10	Unmodified	_TFGKKKGPNA_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.30126953125	2	524.300916	1046.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.044	1	14.044	13.544	14.544	0								0	0	0	0.28607	1	2913	2913		32.812	17.171	1				42736	4908	28278	28394	43285	43285					0.06584851571483341
TFHPLAFVL	9	Unmodified	_TFHPLAFVL_					0	0	0			REV__nc|ENSG00000101187|Q96BD0-2|SLCO4A1	REV__nc|ENSG00000101187|Q96BD0-2|SLCO4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	348.8659362792969	3	348.867411	1043.5804	-0.70264	-0.00024513	-4.4392	-0.0015487	-5.1419	-0.0017938	348.8661250670018	25.104	0.20506	25.104	25.018	25.223	0					11	6	2	0	0	0	0.45358	1	7764	7764		37.159	5.2042	1	205950	+		42737	13590	28279	28395	43286	43286					0.060355386908895525
TFHYWEGN	8	Unmodified	_TFHYWEGN_					0	0	0			REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2238159179688	2	527.224874	1052.43519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.639	1	12.639	12.139	13.139	0								0	0	0	1.7419	1	2893	2893		16.473	2.6978	1		+		42738	14968	28280	28396	43287	43287					-0.08892549176084685
TFKELANEF	9	Unmodified	_TFKELANEF_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2789916992188	2	549.776939	1097.53933	0.52924	0.00029096	-0.25359	-0.00013942	0.27565	0.00015155	549.776825610602	42.23	0.22415	42.23	42.137	42.361	0					17	11	2	0	0	0	0.085655	1	16016	16016		82.75	9.8712	1	105890			42739	1370	28281	28397	43288	43288					-0.005542671392504417
TFKELANEF	9	Unmodified	_TFKELANEF_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7772827148438	2	549.776939	1097.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.193	1	42.193	41.693	42.693	0								0	0	0	0.095784	1	16567	16567		72.879	19.943	1				42740	1370	28281	28397	43289	43289					-0.005542671392504417
TFLDFTKC	8	Unmodified	_TFLDFTKC_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7353515625	2	487.736228	973.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.573	1	22.573	22.073	23.073	0								0	0	0	1.7419	1	6665	6665		19.36	1.0356	1		+		42741	14908	28282	28398	43290	43290					-0.029886661028285744
TFLLPFLSY	9	Unmodified	_TFLLPFLSY_					0	0	0			REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8037109375	2	550.804968	1099.59538	-1.3872	-0.00076406	-0.97983	-0.0005397	-2.367	-0.0013038	550.8043371140919	19.568	0.13798	19.568	19.479	19.617	0					5	3	2	0	0	0	0.58342	1	5347	5347		23.042	23.042	1	157900	+		42742	15698	28283	28399	43291	43291					0.04956985768239974
TFLLVGMPGL	10	Unmodified	_TFLLVGMPGL_					0	0	0		OR51S1|p.T247Pfs*16|1|0.4|ENSG00000176922|chr11:4848470-4848470|T/-|frameshift_variant;ENSG00000176922|ENST00000322101|OR51S1	OR51S1|p.T247Pfs*16|1|0.4|ENSG00000176922|chr11:4848470-4848470|T/-|frameshift_variant	OR51S1|p.T247Pfs*16|1|0.4|ENSG00000176922|chr11:4848470-4848470|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.8695068359375	3	349.868423	1046.58344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.233	1	14.233	13.733	14.733	0								0	0	0	0.4201	1	3494	3494		22.58	1.6327	1				42743	6635	28284	28400	43292	43292					0.06201045753391554
TFLQLGAP	8	Unmodified	_TFLQLGAP_					0	0	0			REV__ENST00000480738.1_1_13:99967048-100037586:+|nuORF	REV__ENST00000480738.1_1_13:99967048-100037586:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.74127197265625	2	423.739628	845.464704	2.5205	0.001068	1.3208	0.00055968	3.8413	0.0016277	423.7402516564688	37.635	0.3014	37.635	37.535	37.837	0					13	6	3	0	0	0	0.52345	1	14740	14740		57.811	0	1	528010	+		42744	19593	28285	28401	43293	43293					0.03579014840045147
TFLTTHTSA	9	Unmodified	_TFLTTHTSA_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12;REV__nc|ENSG00000205277|Q9UKN1|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.747802734375	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.706	1	25.706	25.206	26.206	0								0	0	0	0.35899	1	9157	9157		23.042	0	1		+		42745	17519;21194	28286	28402	43294	43294					-0.007831093448089632
TFPERKKK	8	Unmodified	_TFPERKKK_					0	0	0			REV__ENSG00000140297|ENST00000396065|GCNT3	REV__ENSG00000140297|ENST00000396065|GCNT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.3045043945312	2	517.311284	1032.60801	0.22275	0.00011523	-0.073009	-3.7768E-05	0.14974	7.7462E-05	517.3111864604241	15.322	0.85071	15.322	15.063	15.913	0					41	17	5	0	0	0	0.49216	1	4138	4138		60.972	4.2509	1	5502800	+		42746	15068	28287	28403	43295	43295					0.09301441951129163
TFPPRVDAN	9	Unmodified	_TFPPRVDAN_					0	0	0			REV__ENST00000441290.6_1_7:114296499-114304492:+|nuORF;REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4;REV__nc|ENSG00000128573|O15409-2|FOXP2	REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.76336669921875	2	508.761623	1015.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.113	1	22.113	21.613	22.613	0								0	0	0	0.37233	1	6531	6531		19.104	0.84144	1		+		42747	19237;14905;14517	28288	28404	43296	43296					0.001559992663715093
TFQGEQAALKR	11	Unmodified	_TFQGEQAALKR_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	624.8387451171875	2	624.838394	1247.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.622	1	13.622	13.122	14.122	0								0	0	0	0.40876	1	2766	2766		35.152	0.97948	1		+		42748	16345	28289	28405	43297	43297					0.04830989312017664
TFRRMWKWLQE	11	Unmodified	_TFRRMWKWLQE_					0	0	0		ENSG00000169856|ENST00000305901|ONECUT1;ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000119547|ENST00000491143|ONECUT2	ENSG00000169856|ENST00000305901|ONECUT1	ENSG00000169856|ENST00000305901|ONECUT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.6102905273438	3	527.610006	1579.80819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.979	1	49.979	49.479	50.479	0								0	0	0	0.45674	1	19750	19750		11.932	2.7206	1				42749	3122	28290	28406	43298	43298					0.04147548556420588
TFSAERTQI	9	Unmodified	_TFSAERTQI_					0	0	0			REV__ENST00000471810.5_1_2:225751209-225846977:-|nuORF	REV__ENST00000471810.5_1_2:225751209-225846977:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.772705078125	2	526.772188	1051.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.931	1	35.931	35.431	36.431	0								0	0	0	0.24544	1	13959	13959		44.377	5.1244	1		+		42750	19486	28291	28407	43299	43299					0.006119645752505676
TFSLFKVYT	9	Unmodified	_TFSLFKVYT_					0	0	0			REV__ENST00000467604.5_1_3:118931398-118931611:-|nuORF	REV__ENST00000467604.5_1_3:118931398-118931611:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8692932128906	3	369.202459	1104.58555	1.047	0.00038656	2.013	0.00074319	3.06	0.0011298	369.20321454439005	49.904	0.07563	49.904	49.849	49.924	0					4	2	2	0	0	0	0.61124	1	18774	18774		19.104	2.3861	1	21812	+		42751	19429	28292	28408	43300	43300					0.037437977628542285
TFSRLMNLT	9	Unmodified	_TFSRLMNLT_					0	0	0		ENSG00000134061|ENST00000256447|CD180;CD180|p.A649Cfs*3|1|0.26|ENSG00000134061|chr5:67182898-67182899|-/A|frameshift_variant;CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant	ENSG00000134061|ENST00000256447|CD180	ENSG00000134061|ENST00000256447|CD180	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7840576171875	2	541.786784	1081.55902	0.1474	7.9857E-05	-2.8838	-0.0015624	-2.7364	-0.0014825	541.7849271231673	37.077	0.24698	37.077	36.965	37.212	0					18	13	2	0	0	0	0.39215	1	12540	12540		42.396	11.892	1	78212			42752	424	28293	28409	43301	43301					0.021497855998632076
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7510375976562	2	529.750724	1057.4869	0.11393	6.0354E-05	0.5957	0.00031557	0.70962	0.00037592	529.7509482816039	42.786	0.2846	42.786	42.688	42.972	0					29	14	3	0	0	0	0.22377	1	16168	16168		58.782	16.386	1	262600			42753	7722	28294	28410	43302	43302					-0.03954805482203483
TFTKDEESY	9	Unmodified	_TFTKDEESY_					0	0	0		ENSG00000078081|ENST00000265598|LAMP3	ENSG00000078081|ENST00000265598|LAMP3	ENSG00000078081|ENST00000265598|LAMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.246826171875	2	560.245669	1118.47678	1.8232	0.0010214	0.045296	2.5377E-05	1.8685	0.0010468	560.2457932568858	30.55	0.50512	30.55	30.376	30.881	0					15	10	2	0	0	0	0.47038	1	11320	11320		35.618	5.1146	1	503820			42754	1594	28295	28411	43303	43303					-0.07771457998069309
TFTKTCTPV	9	Unmodified	_TFTKTCTPV_					0	0	0			REV__ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	REV__ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2541198730469	2	499.254785	996.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.061	1	30.061	29.561	30.561	0								0	0	0	0.36609	1	11198	11198		20.947	0	1		+		42755	17204	28296	28412	43304	43304					-0.003369945570739219
TFTLPPVHR	9	Unmodified	_TFTLPPVHR_					0	0	0		ENSG00000101220|ENST00000379772|ADISSP;nc|ENSG00000101220|Q9GZN8-2|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.3051147460938	2	534.303458	1066.59236	1.1462	0.00061241	0.91139	0.00048696	2.0576	0.0010994	534.3036786964065	33.485	0.22396	33.485	33.377	33.601	0					13	7	3	0	0	0	0.39215	1	10893	10893		42.396	3.59	1	163360			42756	2103	28297	28413	43305	43305					0.061731554340894945
TFTPNHETM	9	Unmodified	_TFTPNHETM_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2393188476562	2	539.237124	1076.45969	3.4162	0.0018421	0.46872	0.00025275	3.8849	0.0020949	539.2374822209838	22.914	0.21683	22.914	22.805	23.022	0					8	4	2	0	0	0	0.17854	1	7701	7701		64.207	10.856	1	1412200	+		42757	16235	28298	28414	43306	43306					-0.0754765708488776
TFTTAWVPH	9	Unmodified	_TFTTAWVPH_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2664794921875	2	530.266542	1058.51853	0.93202	0.00049422	-0.77524	-0.00041108	0.15679	8.314E-05	530.2662084026587	21.036	0.16572	21.036	20.93	21.095	0					7	3	3	0	0	0	0.53083	1	6922	6922		29.15	2.4566	1	243830			42758	3057;11390	28299	28415	43307	43307					-0.008388127282387359
TFVGESRVL	9	Unmodified	_TFVGESRVL_					0	0	0		DYTN|p.A171V|1|0.4|ENSG00000232125|chr2:206700188-206700188|G/A|missense_variant	DYTN|p.A171V|1|0.4|ENSG00000232125|chr2:206700188-206700188|G/A|missense_variant	DYTN|p.A171V|1|0.4|ENSG00000232125|chr2:206700188-206700188|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.27972412109375	2	504.279649	1006.54475	2.9311	0.0014781	-2.45	-0.0012355	0.4811	0.00024261	504.278025921842	41.631	0.19838	41.631	41.546	41.745	0					9	5	2	0	0	0	0.35021	1	16581	16581		45.972	0.020292	1	185340			42759	863	28300	28416	43308	43308					0.04173456443231771
TFVPREPSQ	9	Unmodified	_TFVPREPSQ_					0	0	0			REV__PCOLCE2|p.I390Tfs*8|1|0.26|ENSG00000163710|chr3:142818414-142818414|A/-|frameshift_variant	REV__PCOLCE2|p.I390Tfs*8|1|0.26|ENSG00000163710|chr3:142818414-142818414|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.1855773925781	3	354.185579	1059.53491	0.71076	0.00025174	-0.33548	-0.00011882	0.37528	0.00013292	354.1853934964428	23.054	0.22372	23.054	22.969	23.193	0					9	5	3	0	0	0	0.30841	1	7590	7590		49.536	5.1589	1	300640	+		42760	15911	28301	28417	43309	43309					0.007522684378500344
TFVPVQPMI	9	Oxidation (M)	_TFVPVQPM(Oxidation (M))I_		TFVPVQPM(1)I		TFVPVQPM(69)I	0	0	1			REV__ENST00000478333.1_1_6:137528098-137540521:-|nuORF	REV__ENST00000478333.1_1_6:137528098-137540521:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.281982421875	2	524.280803	1046.54705	1.4465	0.00075839	-2.5342	-0.0013287	-1.0877	-0.00057027	524.279348445092	34.155	0.21877	34.155	34.055	34.273	0					15	9	2	0	0	0	0.14603	1	11134	11134		68.787	10.976	1	174190	+		42761	12959	28302	28418	43310	43310		500			0.025641688566793164
TFVSERVGY	9	Unmodified	_TFVSERVGY_					0	0	0			REV__ENST00000546217.1_1_12:7079496-7079730:-|nuORF	REV__ENST00000546217.1_1_12:7079496-7079730:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.2723999023438	2	529.269281	1056.52401	1.6295	0.00086244	1.7873	0.00094598	3.4168	0.0018084	529.2705722191487	42.299	0.28247	42.299	42.17	42.453	0					9	7	2	0	0	0	0.37197	1	16886	16886		44.117	8.4985	1	73758	+		42762	17591	28303	28419	43311	43311					-0.0019913393641672883
TGAEKQLK	8	Unmodified	_TGAEKQLK_					0	0	0			REV__nc|ENSG00000160710|P55265-3|ADAR	REV__nc|ENSG00000160710|P55265-3|ADAR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.75341796875	2	437.753267	873.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.679	1	23.679	23.179	24.179	0								0	0	0	1.7419	1	6886	6886		87.696	4.946	1		+		42763	15760	28304	28420	43312	43312					0.05017498380414054
TGAFIDQMA	9	Unmodified	_TGAFIDQMA_					0	0	0		tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.22637939453125	2	477.223485	952.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.418	1	21.418	20.918	21.918	0								0	0	0	0.3119	1	6146	6146		32.812	1.2826	1				42764	22657	28305	28421	43313	43313					-0.04570140625264685
TGAGAKRRH	9	Unmodified	_TGAGAKRRH_					0	0	0			REV__ENST00000356522.4_1_1:208061224-208062051:-|nuORF	REV__ENST00000356522.4_1_1:208061224-208062051:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.27386474609375	2	477.273024	952.531495	2.2375	0.0010679	-0.14184	-6.7696E-05	2.0956	0.0010002	477.2728626670199	35.921	0.31462	35.921	35.801	36.115	0					12	6	3	0	0	0	0.03984	1	13919	13919		99.375	14.015	1	556930	+		42765	18522	28306	28422	43314	43314					0.05333063174509789
TGAGPRSPPS	10	Unmodified	_TGAGPRSPPS_					0	0	0			REV__ENST00000452919.1_1_3:238157-238912:-|nuORF	REV__ENST00000452919.1_1_3:238157-238912:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7377624511719	2	463.738148	925.461744	-2.3896	-0.0011082	1.6026	0.0007432	-0.78698	-0.00036495	463.73898806020173	25.992	0.10861	25.992	25.933	26.041	0					4	2	2	0	0	0	0.6796	1	8317	8317		24.519	0.31644	1	82717	+		42766	19324	28307	28423	43315	43315					-0.0039686028476353385
TGAKQRSP	8	Unmodified	_TGAKQRSP_					0	0	0			REV__NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant	REV__NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2219543457031	2	422.735409	843.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.07	1	15.07	14.57	15.57	0								0	0	0	1.7419	1	3813	3813		27.882	3.6795	1		+		42767	13142	28308	28424	43316	43316					0.028274609234244963
TGALLLHLG	9	Unmodified	_TGALLLHLG_					0	0	0			REV__ENST00000409492.1_1_2:172950333-172951818:+|nuORF	REV__ENST00000409492.1_1_2:172950333-172951818:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.77392578125	2	447.774003	893.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.691	1	17.691	17.191	18.191	0								0	0	0	0.30835	1	5299	5299		33.516	8.0654	1		+		42768	18999	28309	28425	43317	43317					0.08242679139766551
TGALLSLAPA	10	Unmodified	_TGALLSLAPA_					0	0	0			REV__nc|ENSG00000148204|Q5IJ48-2|CRB2	REV__nc|ENSG00000148204|Q5IJ48-2|CRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.27142333984375	2	457.271293	912.528032	-1.0291	-0.00047056	1.0721	0.00049024	0.04304	1.9681E-05	457.27168597747067	31.161	0.24792	31.161	31.034	31.282	0					14	9	2	0	0	0	0.52707	1	10287	10287		42.396	0	1	80208	+		42769	15374	28310	28426	43318	43318					0.06826955557278325
TGANSGQYR	9	Unmodified	_TGANSGQYR_					0	0	0		ENST00000549044.5_1_14:105684030-105684126:-|nuORF	ENST00000549044.5_1_14:105684030-105684126:-|nuORF	ENST00000549044.5_1_14:105684030-105684126:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.22589111328125	2	477.225405	952.436257	-0.1177	-5.6171E-05	0.82974	0.00039597	0.71204	0.0003398	477.22589019425345	21.534	0.56602	21.534	21.324	21.89	0					17	11	3	0	0	0	0.25716	1	7142	7142		54.776	10.66	1	877770			42770	10605	28311	28427	43319	43319					-0.04186334807207004
TGAPINGSK	9	Unmodified	_TGAPINGSK_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7297668457031	2	422.729792	843.445031	-0.34468	-0.00014571	0.029838	1.2613E-05	-0.31484	-0.00013309	422.7298136743146	15.554	0.3538	15.554	15.461	15.815	0					19	7	4	0	0	0	0.02953	1	4114	4114		109.48	10.465	1	2691100	+		42771	13458	28312	28428	43320	43320					0.017046388292897063
TGAPLRSGP	9	Unmodified	_TGAPLRSGP_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.237548828125	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.509	1	19.509	19.009	20.009	0								0	0	0	0.27939	1	6179	6179		39.253	5.0803	1		+		42772	16663	28313	28429	43321	43321					0.027963450661900424
TGARSLGLLVL	11	Unmodified	_TGARSLGLLVL_					0	0	0			REV__ENSG00000120327|ENST00000239449|PCDHB14	REV__ENSG00000120327|ENST00000239449|PCDHB14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.2325134277344	3	367.232641	1098.67609	0.47241	0.00017348	-0.65614	-0.00024096	-0.18373	-6.7473E-05	367.2323753018826	17.536	0.24847	17.536	17.448	17.696	0					13	6	3	0	0	0	0.69733	1	4975	4975		24.232	0	1	939570	+		42773	14278	28314	28430	43322	43322					0.1307026681113257
TGASDAIVTVL	11	Unmodified	_TGASDAIVTVL_					0	0	0		GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant;ENSG00000167701|ENST00000394955|GPT	GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant	GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.8639221191406	3	349.529123	1045.56554	0.17386	6.0771E-05	1.056	0.00036911	1.2299	0.00042988	349.5294478069412	17.521	0.12791	17.521	17.462	17.59	0					6	4	2	0	0	0	0.72154	1	4188	4188		17.167	6.5799	1	91494			42774	6021	28315	28431	43323	43323					0.04458002032242803
TGASLADIMAK	11	Unmodified	_TGASLADIMAK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2841796875	2	539.284074	1076.5536	0.24967	0.00013465	0.60416	0.00032581	0.85383	0.00046046	539.2843693166686	39.07	0.18996	39.07	38.97	39.16	0					12	7	2	0	0	0	0.014531	1	14872	14872		122.94	47.896	1	252550			42775	2846	28316	28432	43324	43324					0.01838062017395714
TGASNTRPWGL	11	Unmodified	_TGASNTRPWGL_					0	0	0			REV__ENST00000470525.1_1_3:48452064-48453367:-|nuORF	REV__ENST00000470525.1_1_3:48452064-48453367:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.19989013671875	3	387.2	1158.57817	0.13478	5.2188E-05	-0.42095	-0.00016299	-0.28617	-0.00011081	387.199848035713	18.603	0.21774	18.603	18.493	18.711	0					10	4	3	0	0	0	0.74458	1	5753	5753		23.378	0	1	712190	+		42776	19470	28317	28433	43325	43325					0.005224582151413415
TGASVIRAY	9	Unmodified	_TGASVIRAY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.2591857910156	2	469.258717	936.50288	0.019718	9.2529E-06	-0.44712	-0.00020982	-0.4274	-0.00020056	469.2585508185156	28.657	0.11411	28.657	28.6	28.714	0					8	5	2	0	0	0	0.15163	1	8967	8967		67.494	28.688	1	67572			42777	2554	28318	28434	43326	43326					0.032089007547028814
TGASVIRAY	9	Unmodified	_TGASVIRAY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2581481933594	2	469.258717	936.50288	0.23905	0.00011218	-2.3214	-0.0010893	-2.0824	-0.00097717	469.25823657872377	28.932	0.37168	28.932	28.846	29.218	0					21	9	3	0	0	0	0.02953	1	10273	10273		109.48	53.974	1	495260			42778	2554	28318	28434	43327	43327					0.032089007547028814
TGASVIRAY	9	Unmodified	_TGASVIRAY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.7603454589844	2	469.258717	936.50288	-1.1744	-0.00055109	0.63169	0.00029643	-0.54268	-0.00025466	469.25885651298347	28.672	0.17654	28.672	28.598	28.775	0					12	7	2	0	0	0	0.056004	1	9262	9262		93.143	45.486	1	146990			42779	2554	28318	28434	43328	43328					0.032089007547028814
TGASVIRAY	9	Unmodified	_TGASVIRAY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2585754394531	2	469.258717	936.50288	0.62035	0.0002911	-3.4323	-0.0016107	-2.812	-0.0013195	469.25639320206676	28.931	0.39906	28.931	28.812	29.211	0					24	8	5	0	0	0	0.020674	1	10664	10664		120.87	35.509	1	599570			42780	2554	28318	28434	43329	43329					0.032089007547028814
TGASVIRAY	9	Unmodified	_TGASVIRAY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2585144042969	2	469.258717	936.50288	-0.67048	-0.00031463	-2.0133	-0.00094475	-2.6838	-0.0012594	469.2574345920353	28.714	0.34174	28.714	28.639	28.981	0					10	8	2	0	0	0	0.095583	1	9577	9577		80.455	43.296	1	110360			42781	2554	28318	28434	43330	43330					0.032089007547028814
TGASVIRAY	9	Unmodified	_TGASVIRAY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.25830078125	2	469.258717	936.50288	-2.1939	-0.0010295	1.8889	0.0008864	-0.30493	-0.00014309	469.25942726973443	28.745	0.16538	28.745	28.628	28.793	0					6	4	2	0	0	0	0.28897	1	9570	9570		51.193	3.5354	1	80466			42782	2554	28318	28434	43331	43331					0.032089007547028814
TGASVIRAY	9	Unmodified	_TGASVIRAY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2586975097656	2	469.258717	936.50288	0.54624	0.00025633	-3.3493	-0.0015717	-2.8031	-0.0013154	469.2564681973382	29.007	0.36756	29.007	28.741	29.109	0					15	7	4	0	0	0	0.02953	1	10515	10515		109.48	43.675	1	747660			42783	2554	28318	28434	43332	43332					0.032089007547028814
TGASVLNK	8	Unmodified	_TGASVLNK_					0	0	0		nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1;DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant	nc|ENSG00000079785|Q92499-2|DDX1	nc|ENSG00000079785|Q92499-2|DDX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.22662353515625	2	395.226885	788.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.103	1	17.103	16.603	17.603	0								0	0	0	1.7419	1	5021	5021		35.618	2.8059	1				42784	1629	28319	28435	43333	43333					0.03653540317623083
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343322753906	3	336.53432	1006.58113	0.24099	8.11E-05	-0.64024	-0.00021546	-0.39925	-0.00013436	336.53410241893977	20.555	0.56532	20.555	20.231	20.797	0					41	17	3	0	0	0	0.61124	1	5575	5575		19.104	0	1	272550			42785	7293	28320	28436	43334	43334					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53424072265625	3	336.53432	1006.58113	0.24139	8.1235E-05	-0.49185	-0.00016553	-0.25047	-8.429E-05	336.53416737422936	23.051	0.79075	23.051	22.804	23.595	0					35	25	2	0	0	0	0.61124	1	6762	6762		26.693	8.4308	1	120700			42786	7293	28320	28436	43335	43335					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53375244140625	3	336.53432	1006.58113	0.24146	8.126E-05	-0.53598	-0.00018038	-0.29452	-9.9115E-05	336.53414190694474	30.967	0.64082	30.967	30.586	31.227	0					48	26	2	0	0	0	0.57706	1	9802	9802		24.519	7.8018	1	123820			42787	7293	28320	28436	43336	43336					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5345153808594	3	336.53432	1006.58113	0.24142	8.1247E-05	-0.56961	-0.00019169	-0.32819	-0.00011045	336.53411653857955	43.335	0.63944	43.335	43.176	43.816	0					51	39	2	0	0	0	0.61124	1	13773	13773		19.104	3.0967	1	71991			42788	7293	28320	28436	43337	43337					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5342712402344	3	336.53432	1006.58113	0.51637	0.00017377	-1.1385	-0.00038316	-0.62218	-0.00020938	336.5344128448669	18.861	4.3428	18.861	18.75	23.093	0					349	101	5	0	0	0	0.57706	1	6796	6796		24.519	0.99649	1	882170000			42789	7293	28320	28436	43338	43338					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5344543457031	3	336.53432	1006.58113	-0.67459	-0.00022702	0.60149	0.00020242	-0.073099	-2.46E-05	336.5345922141169	18.564	1.889	18.564	18.413	20.302	0					140	61	5	0	0	0	0.57706	1	5169	5169		24.519	0	1	65287000			42790	7293	28320	28436	43339	43339					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343933105469	3	336.53432	1006.58113	-0.67431	-0.00022693	0.56005	0.00018848	-0.11426	-3.8454E-05	336.5344864086882	20.872	0.99027	20.872	20.243	21.233	0					45	31	2	0	0	0	0.57706	1	5829	5829		31.53	15.057	1	166900			42791	7293	28320	28436	43340	43340					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.534423828125	3	336.53432	1006.58113	-0.67419	-0.00022689	0.38433	0.00012934	-0.28986	-9.7549E-05	336.53438178037663	33.002	0.60571	33.002	32.61	33.216	0					34	24	2	0	0	0	0.5654	1	10972	10972		25.574	9.5673	1	64113			42792	7293	28320	28436	43341	43341					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.868408203125	3	336.53432	1006.58113	-0.67419	-0.00022689	0.26529	8.9279E-05	-0.4089	-0.00013761	336.53443318962087	33.598	1.2971	33.598	33.385	34.682	0					68	53	2	0	0	0	0.57706	1	11322	11322		31.53	15.057	1	63065			42793	7293	28320	28436	43342	43342					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.7	1	20.7	20.2	21.2	0								0	0	0	0.35507	1	6749	6749		24.519	8.5124	1				42794	7293	28320	28436	43343	43343					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.734	1	35.734	35.234	36.234	0								0	0	0	0.35507	1	13869	13869		24.519	3.682	1				42795	7293	28320	28436	43344	43344					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.278	1	48.278	47.778	48.778	0								0	0	0	0.35507	1	18311	18311		24.519	0	1				42796	7293	28320	28436	43345	43345					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.533935546875	3	336.53432	1006.58113	-1.9123	-0.00064357	1.6761	0.00056406	-0.23626	-7.9509E-05	336.53490340615247	28.034	1.0742	28.034	27.565	28.639	0					39	26	2	0	0	0	0.57706	1	9332	9332		24.519	3.5723	1	122850			42797	7293	28320	28436	43346	43346					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5345458984375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.978	1	42.978	42.478	43.478	0								0	0	0	0.37496	1	14954	14954		19.104	2.3861	1				42798	7293	28320	28436	43347	43347					0.07810333339944009
TGATLYLLR	9	Unmodified	_TGATLYLLR_					0	0	0		NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant;ENST00000486007.1_1_7:10977674-10979684:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	NDUFA4|p.A37T|1|0.4|ENSG00000189043|chr7:10938830-10938830|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.55	1	20.55	20.05	21.05	0								0	0	0	0.32356	1	6545	6545		30.318	0	1				42799	7293	28320	28436	43348	43348					0.07810333339944009
TGATPKGLA	9	Unmodified	_TGATPKGLA_					0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.2348327636719	2	408.23471	814.454868	0.63891	0.00026083	-0.33476	-0.00013666	0.30415	0.00012416	408.23458918110106	17.967	0.1571	17.967	17.91	18.067	0					5	3	2	0	0	0	0.13267	1	5180	5180		71.877	8.5712	1	165740	+		42800	16978	28321	28437	43349	43349					0.040218268346734476
TGCKRTRGR	9	Unmodified	_TGCKRTRGR_					0	0	0			REV__ENST00000248248.7_1_16:77225030-77225147:+|nuORF	REV__ENST00000248248.7_1_16:77225030-77225147:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.5268249511719	3	345.526053	1033.55633	1.515	0.00052349	0.63279	0.00021865	2.1478	0.00074213	345.52628818781454	13.707	0.11138	13.707	13.655	13.766	0					4	2	2	0	0	0	0.51991	1	3256	3256		30.318	0	1	458180	+		42801	17955	28322	28438	43350	43350					0.04089374985574068
TGCLKMKKKAP	11	Unmodified	_TGCLKMKKKAP_					0	0	0			REV__SIN3B|p.R289C|1|0.51|ENSG00000127511|chr19:16853084-16853084|C/T|missense_variant	REV__SIN3B|p.R289C|1|0.51|ENSG00000127511|chr19:16853084-16853084|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2359313964844	3	402.235	1203.68317	3.1429	0.0012642	-0.845	-0.00033989	2.2979	0.0009243	402.23462270150844	33.475	0.36736	33.475	33.266	33.633	0					23	7	4	0	0	0	0.42065	1	12718	12718		50.034	15.947	1	1558300	+		42802	21519	28323	28439	43351	43351					0.08947540095709883
TGCSSWLLA	9	Unmodified	_TGCSSWLLA_					0	0	0		RBM15|p.P284Lfs*98|3|0.26|ENSG00000162775|chr1:110340251-110340251|C/-|frameshift_variant	RBM15|p.P284Lfs*98|3|0.26|ENSG00000162775|chr1:110340251-110340251|C/-|frameshift_variant	RBM15|p.P284Lfs*98|3|0.26|ENSG00000162775|chr1:110340251-110340251|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2270202636719	2	469.226028	936.437503	-0.12648	-5.9349E-05	2.7552	0.0012928	2.6287	0.0012334	469.22712254953495	16.638	0.16494	16.638	16.531	16.696	0					7	3	3	0	0	0	0.43426	1	4807	4807		38.806	3.1879	1	187390			42803	12007	28324	28440	43352	43352					-0.03325836762655854
TGDIVTVAAG	10	Unmodified	_TGDIVTVAAG_					0	0	0		CDH4|p.G523Rfs*13|1|0.22|ENSG00000179242|chr20:61923636-61923637|-/C|frameshift_variant;nc|ENSG00000179242|P55283-2|CDH4;CDH4|p.Y862Mfs*22|2|0.33|ENSG00000179242|chr20:61936770-61936770|C/-|frameshift_variant;ENSG00000179242|ENST00000614565|CDH4	CDH4|p.G523Rfs*13|1|0.22|ENSG00000179242|chr20:61923636-61923637|-/C|frameshift_variant	CDH4|p.G523Rfs*13|1|0.22|ENSG00000179242|chr20:61923636-61923637|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.24298095703125	2	452.242732	902.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.433	1	25.433	24.933	25.933	0								0	0	0	0.26105	1	8086	8086		56.721	5.5284	1				42804	453	28325	28441	43353	43353					0.0157748828091826
TGDKFLKG	8	Unmodified	_TGDKFLKG_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.2421875	2	433.242535	864.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.898	1	30.898	30.398	31.398	0								0	0	0	1.7419	1	10576	10576		35.618	2.1027	1		+		42805	16026	28326	28442	43354	43354					0.03286113351714448
TGDKSKKKK	9	Unmodified	_TGDKSKKKK_					0	0	0			REV__ENST00000490747.1_1_7:92199124-92206443:-|nuORF	REV__ENST00000490747.1_1_7:92199124-92206443:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.3153076171875	2	510.314023	1018.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.82	1	14.82	14.32	15.32	0								0	0	0	0.37233	1	3694	3694		19.104	0	1		+		42806	17658	28327	28443	43355	43355					0.10493120742944484
TGDMSGLLK	9	Unmodified	_TGDMSGLLK_					0	0	0		ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000475678.5_1_2:219131145-219134809:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.23858642578125	2	461.239135	920.463718	0.72244	0.00033322	-2.1129	-0.00097455	-1.3905	-0.00064134	461.2382999288628	34.873	0.17574	34.873	34.794	34.97	0					8	5	2	0	0	0	0.16806	1	13479	13479		65.465	5.3471	1	109950			42807	3518	28328	28444	43356	43356					0.0003043240884608167
TGDPNSKAL	9	Unmodified	_TGDPNSKAL_					0	0	0		nc|ENSG00000172828|Q6UWW8-2|CES3;ENSG00000172828|ENST00000303334|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.73236083984375	2	451.732532	901.45051	-0.012228	-5.5239E-06	-0.67572	-0.00030524	-0.68794	-0.00031077	451.73226992079043	18.725	0.25782	18.725	18.622	18.88	0					16	7	3	0	0	0	0.04067	1	4699	4699		98.582	10.886	1	366000			42808	6388	28329	28445	43357	43357					-0.00415682378911697
TGDPNSKAL	9	Unmodified	_TGDPNSKAL_					0	0	0		nc|ENSG00000172828|Q6UWW8-2|CES3;ENSG00000172828|ENST00000303334|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.73193359375	2	451.732532	901.45051	-0.3214	-0.00014519	-0.15773	-7.1252E-05	-0.47913	-0.00021644	451.732424847261	18.752	0.22146	18.752	18.646	18.868	0					15	6	3	0	0	0	0.3269	1	4693	4693		47.96	1.5027	1	206390			42809	6388	28329	28445	43358	43358					-0.00415682378911697
TGDPNSKAL	9	Unmodified	_TGDPNSKAL_					0	0	0		nc|ENSG00000172828|Q6UWW8-2|CES3;ENSG00000172828|ENST00000303334|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7322692871094	2	451.732532	901.45051	-0.51083	-0.00023076	-0.89899	-0.0004061	-1.4098	-0.00063686	451.7324859381496	19.068	0.41859	19.068	18.889	19.308	0					27	10	4	0	0	0	0.10506	1	5664	5664		78.264	17.292	1	883060			42810	6388	28329	28445	43359	43359					-0.00415682378911697
TGDPNSKAL	9	Unmodified	_TGDPNSKAL_					0	0	0		nc|ENSG00000172828|Q6UWW8-2|CES3;ENSG00000172828|ENST00000303334|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.73236083984375	2	451.732532	901.45051	-1.1925	-0.00053868	0.71116	0.00032125	-0.48132	-0.00021743	451.7328828711793	18.76	0.4127	18.76	18.588	19	0					35	13	4	0	0	0	0.085655	1	4929	4929		82.75	7.7072	1	1009300			42811	6388	28329	28445	43360	43360					-0.00415682378911697
TGDPNSKAL	9	Unmodified	_TGDPNSKAL_					0	0	0		nc|ENSG00000172828|Q6UWW8-2|CES3;ENSG00000172828|ENST00000303334|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7323303222656	2	451.732532	901.45051	-0.096842	-4.3746E-05	-0.50301	-0.00022723	-0.59985	-0.00027097	451.7323117028585	18.815	0.40013	18.815	18.676	19.077	0					24	9	4	0	0	0	0.0047071	1	4972	4972		159.28	59.901	1	618910			42812	6388	28329	28445	43361	43361					-0.00415682378911697
TGDVPHTSV	9	Unmodified	_TGDVPHTSV_					0	0	0		USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7248840332031	2	456.724707	911.43486	-0.38753	-0.000177	-0.18282	-8.3497E-05	-0.57035	-0.00026049	456.72459162595766	24.641	0.25664	24.641	24.462	24.719	0					12	7	2	0	0	0	0.35045	1	7283	7283		45.952	0	1	125370			42813	4266	28330	28446	43362	43362					-0.02439968895942002
TGEAMLVIK	9	Unmodified	_TGEAMLVIK_					0	0	0		tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.2724304199219	2	481.272978	960.531403	0.040221	1.9357E-05	0.6424	0.00030917	0.68262	0.00032853	481.2732778240609	36.152	0.17902	36.152	36.062	36.241	0					18	8	3	0	0	0	0.07136	1	11856	11856		87.696	0	1	111580			42814	22985	28331	28447	43363	43363					0.04955882339618256
TGEAMLVIK	9	Unmodified	_TGEAMLVIK_					0	0	0		tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.27294921875	2	481.272978	960.531403	0.5328	0.00025642	-0.35474	-0.00017073	0.17806	8.5696E-05	481.2727788966309	36.458	0.66142	36.458	36.134	36.795	0					31	18	3	0	0	0	0.014688	1	13745	13745		131.03	0	1	773950			42815	22985	28331	28447	43364	43364					0.04955882339618256
TGEAMLVIK	9	Unmodified	_TGEAMLVIK_					0	0	0		tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.273193359375	2	481.272978	960.531403	-1.3501	-0.00064976	1.6485	0.0007934	0.29844	0.00014363	481.27387346554286	36.22	0.20012	36.22	36.102	36.302	0					21	9	3	0	0	0	0.10915	1	12253	12253		77.318	0	1	262780			42816	22985	28331	28447	43365	43365					0.04955882339618256
TGEAMLVIK	9	Unmodified	_TGEAMLVIK_					0	0	0		tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.272705078125	2	481.272978	960.531403	0.68504	0.00032969	-0.62218	-0.00029944	0.062853	3.0249E-05	481.2727853543896	36.425	0.43044	36.425	36.284	36.714	0					28	12	3	0	0	0	0.021961	1	14174	14174		118.74	0	1	1498500			42817	22985	28331	28447	43366	43366					0.04955882339618256
TGEAMLVIK	9	Unmodified	_TGEAMLVIK_					0	0	0		tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2733459472656	2	481.272978	960.531403	-0.29306	-0.00014104	0.87647	0.00042182	0.58341	0.00028078	481.27344417039626	36.196	0.24881	36.196	36.103	36.352	0					17	9	3	0	0	0	0.0406	1	12939	12939		98.629	0	1	166650			42818	22985	28331	28447	43367	43367					0.04955882339618256
TGEAMLVIK	9	Unmodified	_TGEAMLVIK_					0	0	0		tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2731018066406	2	481.272978	960.531403	0.91409	0.00043993	-0.84036	-0.00040444	0.073725	3.5482E-05	481.2726277543158	36.371	0.66317	36.371	36.064	36.727	0					23	13	3	0	0	0	0.032052	1	14118	14118		107.01	0	1	1904600			42819	22985	28331	28447	43368	43368					0.04955882339618256
TGEAMLVIK	9	Unmodified	_TGEAMLVIK_					0	0	0		tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2733154296875	2	481.272978	960.531403	2.3475	0.0011298	-1.3897	-0.00066883	0.95781	0.00046097	481.2723700269261	36.354	0.36409	36.354	36.249	36.613	0					13	7	2	0	0	0	0.048471	1	14132	14132		95.815	0	1	1170200			42820	22985	28331	28447	43369	43369					0.04955882339618256
TGELAAEVLI	10	Unmodified	_TGELAAEVLI_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523243.5_1_8:135490727-135577256:-|nuORF	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.1942443847656	3	339.193852	1014.55973	1.5768	0.00053483	-0.54759	-0.00018574	1.0292	0.00034909	339.1936381686857	17.55	0.50773	17.55	17.226	17.734	0					24	10	4	0	0	0	0.60076	1	5110	5110		38.754	4.832	1	491390			42821	1397	28332	28448	43370	43370					0.05302903520566815
TGELKVSRGL	10	Unmodified	_TGELKVSRGL_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF	ENST00000463007.5_1_2:240011659-240219867:-|nuORF	ENST00000463007.5_1_2:240011659-240219867:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.8768310546875	3	353.876746	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.779	1	18.779	18.279	19.279	0								0	0	0	0.38797	1	5825	5825		25.126	0	1				42822	9754	28333	28449	43371	43371					0.08144816880326289
TGEPWPSI	8	Unmodified	_TGEPWPSI_					0	0	0		ENSG00000147613|ENST00000276616|PSKH2	ENSG00000147613|ENST00000276616|PSKH2	ENSG00000147613|ENST00000276616|PSKH2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.7164001464844	2	443.718893	885.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.039	1	19.039	18.539	19.539	0								0	0	0	1.7419	1	5091	5091		31.955	0	1				42823	4791	28334	28450	43372	43372					-0.024061659192966545
TGETALPR	8	Unmodified	_TGETALPR_					0	0	0			REV__nc|ENSG00000166482|P55083-2|MFAP4	REV__nc|ENSG00000166482|P55083-2|MFAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.7302551269531	2	422.729792	843.445031	-1.181	-0.00049924	0.71373	0.00030172	-0.46726	-0.00019752	422.7301623750104	21.319	0.36345	21.319	21.157	21.52	0					16	11	2	0	0	0	0.72381	1	6082	6082		30.504	0	1	170400	+		42824	21106	28335	28451	43373	43373					0.017046388292783377
TGETTVFSVG	10	Unmodified	_TGETTVFSVG_					0	0	0		ENSG00000164620|ENST00000297164|RELL2	ENSG00000164620|ENST00000297164|RELL2	ENSG00000164620|ENST00000297164|RELL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2476806640625	2	499.245472	996.476391	2.9182	0.0014569	1.4505	0.00072414	4.3687	0.002181	499.2464069606142	18.15	0.46196	18.15	18.044	18.506	0					21	9	4	0	0	0	0.32758	1	5367	5367		64.207	4.089	1	3800800			42825	5711	28336	28452	43374	43374					-0.021988329272744522
TGFLTSPAK	9	Unmodified	_TGFLTSPAK_					0	0	0		ENST00000261530.11_1_14:76672664-76672892:+|nuORF	ENST00000261530.11_1_14:76672664-76672892:+|nuORF	ENST00000261530.11_1_14:76672664-76672892:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.25616455078125	2	461.255643	920.496732	-0.15492	-7.1459E-05	-0.39616	-0.00018273	-0.55108	-0.00025419	461.2554620329341	34.2	0.55788	34.2	34.065	34.623	0					47	17	4	0	0	0	0.53064	1	12206	12206		29.17	1.2878	1	3955100			42826	8297	28337	28453	43375	43375					0.03330382523188291
TGFNGKLVY	9	Unmodified	_TGFNGKLVY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.76953125	2	499.768917	997.523281	0.32907	0.00016446	0.818	0.00040881	1.1471	0.00057327	499.7692123896378	36.418	0.21021	36.418	36.342	36.552	0					14	10	2	0	0	0	0.22837	1	11936	11936		58.23	10.573	1	115700			42827	1705	28338	28454	43376	43376					0.02442071414509428
TGFNGKLVY	9	Unmodified	_TGFNGKLVY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7688903808594	2	499.768917	997.523281	0.66627	0.00033298	-0.43403	-0.00021692	0.23224	0.00011606	499.7686184197658	36.677	0.35637	36.677	36.595	36.952	0					23	9	3	0	0	0	0.15163	1	13843	13843		67.494	10.773	1	1146300			42828	1705	28338	28454	43377	43377					0.02442071414509428
TGFNGKLVY	9	Unmodified	_TGFNGKLVY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.76885986328125	2	499.768917	997.523281	0.88003	0.00043981	-1.3184	-0.0006589	-0.43838	-0.00021909	499.7685783949347	36.655	0.51481	36.655	36.455	36.97	0					30	14	3	0	0	0	0.095583	1	14292	14292		80.455	17.476	1	946300			42829	1705	28338	28454	43378	43378					0.02442071414509428
TGFNGKLVY	9	Unmodified	_TGFNGKLVY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7691955566406	2	499.768917	997.523281	0.16194	8.0933E-05	0.64693	0.00032332	0.80887	0.00040425	499.7693345445047	36.44	0.19989	36.44	36.368	36.568	0					16	9	2	0	0	0	0.27249	1	13044	13044		52.937	10.462	1	191450			42830	1705	28338	28454	43379	43379					0.02442071414509428
TGFNGKLVY	9	Unmodified	_TGFNGKLVY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7686462402344	2	499.768917	997.523281	-0.69315	-0.00034642	0.47791	0.00023884	-0.21524	-0.00010757	499.76912382704444	36.588	0.41815	36.588	36.479	36.897	0					20	8	4	0	0	0	0.026538	1	14242	14242		112.41	46.608	1	1457300			42831	1705	28338	28454	43380	43380					0.02442071414509428
TGFNGKLVY	9	Unmodified	_TGFNGKLVY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7686767578125	2	499.768917	997.523281	1.0766	0.00053803	-0.165	-8.2464E-05	0.91155	0.00045556	499.76884347249955	36.622	0.75822	36.622	36.265	37.023	0					32	15	4	0	0	0	0.11898	1	14234	14234		75.043	14.071	1	2062000			42832	1705	28338	28454	43381	43381					0.02442071414509428
TGFPCIFLRL	10	Unmodified	_TGFPCIFLRL_					0	0	0		ENST00000462770.5_1_3:133661447-133748739:-|nuORF	ENST00000462770.5_1_3:133661447-133748739:-|nuORF	ENST00000462770.5_1_3:133661447-133748739:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	389.55194091796875	3	389.551205	1165.63179	0.87004	0.00033892	1.0526	0.00041003	1.9226	0.00074895	389.55163292393854	17.502	0.16896	17.502	17.421	17.59	0					8	4	3	0	0	0	0.65051	1	4961	4961		28.081	3.8497	1	838230			42833	9747	28339	28455	43382	43382					0.05559539393289015
TGFPRYEL	8	Unmodified	_TGFPRYEL_					0	0	0			REV__nc|ENSG00000171587|O60469-2|DSCAM	REV__nc|ENSG00000171587|O60469-2|DSCAM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.754150390625	2	491.753267	981.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.944	1	30.944	30.444	31.444	0								0	0	0	1.7419	1	10210	10210		29.15	2.3535	1		+		42834	12741	28340	28456	43383	43383					0.0004949838042875854
TGFRRKRS	8	Unmodified	_TGFRRKRS_					0	0	0		ENST00000564288.5_2_1:39670752-39696910:+|nuORF	ENST00000564288.5_2_1:39670752-39696910:+|nuORF	ENST00000564288.5_2_1:39670752-39696910:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53375244140625	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.904	1	37.904	37.404	38.404	0								0	0	0	1.7419	1	12799	12799		20.947	3.4789	1				42835	10740	28341	28457	43384	43384					0.07541922725658878
TGFSSLFLK	9	Unmodified	_TGFSSLFLK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2796325683594	2	500.279118	998.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.657	1	47.657	47.157	48.157	0								0	0	0	0.31838	1	18165	18165		31.53	3.6476	1				42836	5738	28342	28458	43385	43385					0.04435242074328016
TGFSSLFLK	9	Unmodified	_TGFSSLFLK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.27911376953125	2	500.279118	998.543683	1.0882	0.00054439	-1.2665	-0.00063358	-0.17827	-8.9186E-05	500.27840185169583	47.599	0.19414	47.599	47.516	47.71	0					17	10	2	0	0	0	0.19605	1	18980	18980		62.107	21.535	1	104520			42837	5738	28342	28458	43386	43386					0.04435242074328016
TGFWWGGSLSK	11	Unmodified	_TGFWWGGSLSK_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-2|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	613.3056030273438	2	613.303655	1224.59276	2.9817	0.0018287	-0.43088	-0.00026426	2.5509	0.0015645	613.3034453291876	42.404	0.33586	42.404	42.285	42.621	0					13	9	2	0	0	0	0.20102	1	16912	16912		74.165	12.474	1	163860	+		42838	16215	28343	28459	43387	43387					-0.01055469636730777
TGGARVKH	8	Unmodified	_TGGARVKH_					0	0	0			REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2381286621094	2	413.238119	824.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.392	1	43.392	42.892	43.892	0								0	0	0	1.7419	1	15042	15042		26.796	6.3143	1		+		42839	14519	28344	28460	43388	43388					0.04243184505901354
TGGGAEVSPQT	11	Unmodified	_TGGGAEVSPQT_					0	0	0		MAP10|p.R484Sfs*3|1|0.24|ENSG00000212916|chr1:232806464-232806465|-/AA|frameshift_variant;MAP10|p.L687Rfs*15|1|0.08|ENSG00000212916|chr1:232807082-232807083|-/G|frameshift_variant;ENSG00000212916|ENST00000418460|MAP10	MAP10|p.R484Sfs*3|1|0.24|ENSG00000212916|chr1:232806464-232806465|-/AA|frameshift_variant	MAP10|p.R484Sfs*3|1|0.24|ENSG00000212916|chr1:232806464-232806465|-/AA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7799377441406	2	502.238178	1002.4618	-0.52019	-0.00026126	-0.79841	-0.00040099	-1.3186	-0.00066225	502.73966160134336	11.978	0.9877	11.978	11.813	12.801	0					77	25	6	0	0	0	0.67178	1	2683	2683		30.318	1.1682	1	4402400			42840	7778	28345	28461	43389	43389					-0.03932905075407689
TGGGGKAK	8	Unmodified	_TGGGGKAK_					0	0	0		ENST00000443451.6_1_12:124809950-124819187:-|nuORF	ENST00000443451.6_1_12:124809950-124819187:-|nuORF	ENST00000443451.6_1_12:124809950-124819187:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.19366455078125	2	338.192845	674.371138	1.4834	0.00050168	0.79712	0.00026958	2.2805	0.00077126	338.19303049703484	45.378	0.34014	45.378	45.098	45.438	0					45	20	3	0	0	0	0.79882	1	17509	17509		19.36	5.5846	1	680420			42841	9598	28346	28462	43390	43390					0.02092715457615668
TGGHSCNNPS	10	Unmodified	_TGGHSCNNPS_					0	0	0			REV__ENSG00000101384|ENST00000254958|JAG1	REV__ENSG00000101384|ENST00000254958|JAG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.1926574707031	2	487.193248	972.371943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.88	1	51.88	51.38	52.38	0								0	0	0	0.39244	1	18472	18472		32.812	0.85756	1		+		42842	13603	28347	28463	43391	43391					-0.11534857955643929
TGGIFLQSNL	10	Unmodified	_TGGIFLQSNL_					0	0	0			REV__nc|ENSG00000283378|Q9BZ76-2|CNTNAP3	REV__nc|ENSG00000283378|Q9BZ76-2|CNTNAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2868041992188	2	525.284931	1048.55531	0.44453	0.0002335	2.9466	0.0015478	3.3911	0.0017813	525.2869296215606	26.35	0.17946	26.35	26.258	26.438	0					10	5	3	0	0	0	0.39647	1	8279	8279		44.377	0	1	94693	+		42843	13836	28348	28464	43392	43392					0.032974390976505674
TGGKQTPPPP	10	Unmodified	_TGGKQTPPPP_					0	0	0			REV__DZANK1|p.E450Gfs*16|1|0.3|ENSG00000089091|chr20:18412731-18412732|-/T|frameshift_variant	REV__DZANK1|p.E450Gfs*16|1|0.3|ENSG00000089091|chr20:18412731-18412732|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.264404296875	2	490.263999	978.513445	-0.53999	-0.00026474	1.0349	0.00050736	0.49488	0.00024262	490.26445554432405	26.159	0.21402	26.159	26.051	26.265	0					9	4	3	0	0	0	0.20322	1	9218	9218		66.962	0	1	467430	+		42844	12757	28349	28465	43393	43393					0.023328834091330464
TGGMGIPKN	9	Unmodified	_TGGMGIPKN_					0	0	0			REV__nc|nan|Q9H0W9-4|C11orf54	REV__nc|nan|Q9H0W9-4|C11orf54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.72576904296875	2	437.726195	873.437837	0.70686	0.00030941	-1.3782	-0.00060327	-0.67134	-0.00029386	437.7256108209353	21.87	0.36311	21.87	21.658	22.021	0					18	7	3	0	0	0	0.22377	1	7331	7331		58.782	12.81	1	646200	+		42845	16901	28350	28466	43394	43394					-0.003944170427871541
TGGSVRLHG	9	Unmodified	_TGGSVRLHG_					0	0	0			REV__ENST00000362057.3_1_9:117266551-117266902:-|nuORF	REV__ENST00000362057.3_1_9:117266551-117266902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.242919921875	2	442.240858	882.467164	2.6182	0.0011579	1.6175	0.00071533	4.2357	0.0018732	442.2414984914766	33.176	0.25652	33.176	33.076	33.332	0					9	5	2	0	0	0	0.39215	1	12575	12575		42.396	10.441	1	454940	+		42846	18580	28351	28467	43395	43395					0.021228632977113193
TGGVAQNFQ	9	Unmodified	_TGGVAQNFQ_					0	0	0		CAPN11|p.S248N|1|0.07|ENSG00000137225|chr6:44173298-44173298|G/A|missense_variant	CAPN11|p.S248N|1|0.07|ENSG00000137225|chr6:44173298-44173298|G/A|missense_variant	CAPN11|p.S248N|1|0.07|ENSG00000137225|chr6:44173298-44173298|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2247009277344	2	461.224874	920.435195	-0.84867	-0.00039143	-0.3496	-0.00016124	-1.1983	-0.00055267	461.22510455545597	18.831	0.20263	18.831	18.707	18.91	0					9	6	2	0	0	0	0.47038	1	4999	4999		35.618	6.4687	1	60877			42847	366	28352	28468	43396	43396					-0.02820549176090026
TGGVLIKK	8	Unmodified	_TGGVLIKK_					0	0	0			REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.2707824707031	2	408.271096	814.527639	0.7597	0.00031016	-1.392	-0.00056831	-0.6323	-0.00025815	408.27048963509105	22.231	0.31669	22.231	22.121	22.438	0					11	6	3	0	0	0	0.30437	1	7373	7373		82.305	8.3303	1	1804300	+		42848	21902	28353	28469	43397	43397					0.11295580628075186
TGHSVDILKN	10	Unmodified	_TGHSVDILKN_					0	0	0		ENST00000521621.5_1_5:178047568-178050263:-|nuORF	ENST00000521621.5_1_5:178047568-178050263:-|nuORF	ENST00000521621.5_1_5:178047568-178050263:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	361.8658752441406	3	361.864617	1082.57202	0.45719	0.00016544	3.3885	0.0012262	3.8456	0.0013916	361.86600474142887	32.723	0.1918	32.723	32.625	32.816	0					12	7	2	0	0	0	0.65213	1	10596	10596		40.058	22.59	1	51921			42849	10316	28354	28470	43398	43398					0.03403939983604687
TGHTLLEQI	9	Unmodified	_TGHTLLEQI_					0	0	0			REV__ENSG00000121440|ENST00000263666|PDZRN3	REV__ENSG00000121440|ENST00000263666|PDZRN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.27911376953125	2	506.277106	1010.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.972	1	42.972	42.472	43.472	0								0	0	0	0.36266	1	16839	16839		21.96	2.8564	1		+		42850	14312	28355	28471	43399	43399					0.034811525806162535
TGHWVDEVG	9	Unmodified	_TGHWVDEVG_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2289123535156	2	500.230156	998.445759	0.15711	7.8589E-05	-1.9812	-0.00099105	-1.8241	-0.00091246	500.22878210770125	22.563	0.66965	22.563	22.333	23.003	0					43	15	4	0	0	0	0.51817	1	6672	6672		30.504	3.8107	1	1060300			42851	1904	28356	28472	43400	43400					-0.053525665216625384
TGIAPPNR	8	Unmodified	_TGIAPPNR_					0	0	0			REV__ENST00000232854.8_1_3:50606657-50608415:+|nuORF	REV__ENST00000232854.8_1_3:50606657-50608415:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.23236083984375	2	413.232502	824.450451	0.55548	0.00022954	-0.81514	-0.00033684	-0.25966	-0.0001073	413.23220664367346	18.094	0.19977	18.094	17.959	18.159	0					6	4	2	0	0	0	0.37378	1	5224	5224		73.975	7.5455	1	100400	+		42852	17917	28357	28473	43401	43401					0.031203624117551954
TGIFVNKKT	9	Unmodified	_TGIFVNKKT_					0	0	0			REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.678	1	24.678	24.178	25.178	0								0	0	0	0.35899	1	8542	8542		23.523	0	1		+		42853	17202	28358	28474	43402	43402					0.07810333339955378
TGIKLKGTK	9	Unmodified	_TGIKLKGTK_					0	0	0			REV__nc|ENSG00000076685|P49902-2|NT5C2	REV__nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.3078918457031	2	473.30821	944.601866	-0.53391	-0.00025271	-0.020628	-9.7636E-06	-0.55454	-0.00026247	473.30813981756165	12.964	0.14537	12.964	12.86	13.006	0					8	4	3	0	0	0	0.47038	1	2849	2849		35.618	4.0885	1	353110	+		42854	13252	28359	28475	43403	43403					0.1273492371960856
TGIKTTSELK	10	Unmodified	_TGIKTTSELK_					0	0	0		tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.876953125	3	359.876523	1076.60774	1.4282	0.00051398	-0.045773	-1.6473E-05	1.3824	0.0004975	359.8764817430388	17.693	0.42105	17.693	17.534	17.955	0					16	8	3	0	0	0	0.62149	1	5311	5311		31.634	31.634	1	1798100			42855	22594	28360	28476	43404	43404					0.07249977440596922
TGINAGLIVGL	11	Unmodified	_TGINAGLIVGL_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.2095642089844	3	343.209725	1026.60735	-0.029541	-1.0139E-05	-0.11455	-3.9315E-05	-0.14409	-4.9454E-05	343.20964091887816	25.17	0.51031	25.17	24.821	25.331	0					18	10	3	0	0	0	0.68382	1	8746	8746		53.597	20.846	1	300360	+		42856	22056	28361	28477	43405	43405					0.09510602511431898
TGINAVAHIR	10	Unmodified	_TGINAVAHIR_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	351.2063903808594	3	351.205085	1050.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.347	1	21.347	20.847	21.847	0								0	0	0	0.4201	1	5869	5869		20.837	0	1		+		42857	14609	28362	28478	43406	43406					0.07015369802979876
TGITLNKP	8	Unmodified	_TGITLNKP_					0	0	0		ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B	ENSG00000144369|ENST00000304698|FAM171B	ENSG00000144369|ENST00000304698|FAM171B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.2501220703125	2	422.25036	842.486168	0.37936	0.00016018	-0.14097	-5.9523E-05	0.23839	0.00010066	422.25033994298445	21.801	0.18781	21.801	21.71	21.898	0					7	4	2	0	0	0	0.46905	1	6995	6995		63.306	0	1	55238			42858	4611	28363	28479	43407	43407					0.05862399868760804
TGIYGKRG	8	Unmodified	_TGIYGKRG_					0	0	0			REV__nc|ENSG00000165521|Q05BV3|EML5	REV__nc|ENSG00000165521|Q05BV3|EML5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.2399597167969	2	426.240327	850.466101	-0.087659	-3.7364E-05	-0.63936	-0.00027252	-0.72702	-0.00030989	426.24008004630093	17.961	0.11064	17.961	17.907	18.018	0					4	2	2	0	0	0	0.70055	1	4603	4603		33.516	0	1	99728	+		42859	16048	28364	28480	43408	43408					0.0348864892880556
TGKAPAAIV	9	Unmodified	_TGKAPAAIV_					0	0	0		tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2513732910156	2	414.252903	826.491253	0.58708	0.0002432	-1.242	-0.0005145	-0.65492	-0.0002713	414.2524227807581	28.076	0.66866	28.076	27.683	28.351	0					37	22	2	0	0	0	0.53083	1	8604	8604		29.15	3.6994	1	87025			42860	22862	28365	28481	43409	43409					0.07106703731369635
TGKEIIIEER	10	Unmodified	_TGKEIIIEER_					0	0	0		nc|ENSG00000037757|Q9BV20-2|MRI1;MRI1|p.H330Tfs*24|4|0.35|ENSG00000037757|chr19:13772154-13772154|C/-|frameshift_variant;ENSG00000037757|ENST00000040663|MRI1	nc|ENSG00000037757|Q9BV20-2|MRI1	nc|ENSG00000037757|Q9BV20-2|MRI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.5591735839844	3	396.559194	1186.65575	0.91097	0.00036125	-0.9627	-0.00038177	-0.051733	-2.0515E-05	396.55878484302923	22.566	0.18498	22.566	22.474	22.659	0					11	4	3	0	0	0	0.54861	1	7362	7362		40.058	2.4583	1	707230			42861	1178	28366	28482	43410	43410					0.06989051360665144
TGKFSARGLK	10	Unmodified	_TGKFSARGLK_					0	0	0			REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	REV__HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.5450744628906	3	355.545219	1063.61383	0.7147	0.00025411	-0.98939	-0.00035177	-0.27469	-9.7666E-05	355.54479336075576	17.171	0.17102	17.171	17.102	17.273	0					11	4	4	0	0	0	0.46215	1	4798	4798		45.022	7.2107	1	558580	+		42862	15869	28367	28483	43411	43411					0.08456540462793782
TGKGTTLFSF	10	Unmodified	_TGKGTTLFSF_					0	0	0		ENSG00000082397|ENST00000341928|EPB41L3;EPB41L3|p.L792Afs*6|1|0.52|ENSG00000082397|chr18:5398120-5398121|-/T|frameshift_variant	ENSG00000082397|ENST00000341928|EPB41L3	ENSG00000082397|ENST00000341928|EPB41L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7799072265625	2	529.779482	1057.54441	0.11412	6.0456E-05	0.44892	0.00023783	0.56304	0.00029829	529.7797701351213	41.904	0.24771	41.904	41.795	42.043	0					28	12	3	0	0	0	0.39827	1	15891	15891		56.434	15.861	1	358230			42863	1676	28368	28484	43412	43412					0.017940367233904908
TGKHWEKK	8	Unmodified	_TGKHWEKK_					0	0	0		ENST00000381569.5_2_8:20112800-20161332:-|nuORF	ENST00000381569.5_2_8:20112800-20161332:-|nuORF	ENST00000381569.5_2_8:20112800-20161332:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.281494140625	2	507.279983	1012.54541	2.9415	0.0014921	0.039928	2.0255E-05	2.9814	0.0015124	507.2800905359877	14.737	0.57159	14.737	14.575	15.146	0					18	11	3	0	0	0	0.51931	1	3744	3744		56.721	17.915	1	2586100			42864	9116	28369	28485	43413	43413					0.03964295882940405
TGKISFKNL	9	Unmodified	_TGKISFKNL_					0	0	0		ENSG00000147400|ENST00000370277|CETN2;ENST00000493482.1_1_X:151996387-151997293:-|nuORF;ENSG00000177143|ENST00000327228|CETN1	ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.464	1	37.464	36.964	37.964	0								0	0	0	0.35899	1	12269	12269		30.318	0	1				42865	4777	28370	28486	43414	43414					0.0781033333993264
TGKISFKNL	9	Unmodified	_TGKISFKNL_					0	0	0		ENSG00000147400|ENST00000370277|CETN2;ENST00000493482.1_1_X:151996387-151997293:-|nuORF;ENSG00000177143|ENST00000327228|CETN1	ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.53424072265625	3	336.53432	1006.58113	0.51637	0.00017377	-1.1385	-0.00038316	-0.62218	-0.00020938	336.5344128448669	18.861	4.3428	18.861	18.75	23.093	0					349	101	5	0	0	0	0.51817	2	6076	6076;7544		36.447	15.5	1	882170000			42866	4777	28370	28486	43415;43416	43415					0.0781033333993264
TGKISFKNL	9	Unmodified	_TGKISFKNL_					0	0	0		ENSG00000147400|ENST00000370277|CETN2;ENST00000493482.1_1_X:151996387-151997293:-|nuORF;ENSG00000177143|ENST00000327228|CETN1	ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.394	1	21.394	20.894	21.894	0								0	0	0	0.32356	1	7089	7089		30.318	1.1477	1				42867	4777	28370	28486	43417	43417					0.0781033333993264
TGKISFKNL	9	Unmodified	_TGKISFKNL_					0	0	0		ENSG00000147400|ENST00000370277|CETN2;ENST00000493482.1_1_X:151996387-151997293:-|nuORF;ENSG00000177143|ENST00000327228|CETN1	ENSG00000147400|ENST00000370277|CETN2	ENSG00000147400|ENST00000370277|CETN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.556	1	26.556	26.056	27.056	0								0	0	0	0.35507	1	9396	9396		31.53	0	1				42868	4777	28370	28486	43418	43418					0.0781033333993264
TGKKNNETSPG	11	Unmodified	_TGKKNNETSPG_					0	0	0			REV__ENST00000318887.7_1_3:88199027-88199249:+|nuORF	REV__ENST00000318887.7_1_3:88199027-88199249:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.1914978027344	3	378.191282	1131.55202	0.22244	8.4126E-05	-0.29492	-0.00011154	-0.072478	-2.741E-05	378.19141381591413	13.583	0.23295	13.583	13.511	13.744	0					13	6	4	0	0	0	0.36734	1	3125	3125		55.084	1.995	1	837990	+		42869	18318	28371	28487	43419	43419					-0.008498557469920343
TGKKQDTPL	9	Unmodified	_TGKKQDTPL_					0	0	0			REV__KIAA1671|p.P1367L|1|0.27|ENSG00000197077|chr22:25041230-25041230|C/T|missense_variant	REV__KIAA1671|p.P1367L|1|0.27|ENSG00000197077|chr22:25041230-25041230|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.77813720703125	2	494.277106	986.53966	0.90892	0.00044926	-0.17164	-8.4838E-05	0.73728	0.00036442	494.27715815922204	31.529	0.41489	31.529	31.353	31.768	0					31	8	5	0	0	0	0.41113	1	11849	11849		40.778	1.5253	1	1633100	+		42870	20783	28372	28488	43420	43420					0.04585152580614249
TGKLDFILME	10	Unmodified	_TGKLDFILME_					0	0	0		OR2T29|p.G20E|1|0.07|ENSG00000203661|chr1:248559433-248559433|C/T|missense_variant	OR2T29|p.G20E|1|0.07|ENSG00000203661|chr1:248559433-248559433|C/T|missense_variant	OR2T29|p.G20E|1|0.07|ENSG00000203661|chr1:248559433-248559433|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	389.54351806640625	3	389.542375	1165.6053	3.497	0.0013622	-0.46733	-0.00018204	3.0297	0.0011802	389.54218422438333	21.758	0.29559	21.758	21.643	21.939	0					21	8	4	0	0	0	0.54861	1	6292	6292		40.058	40.058	1	1227800			42871	11877	28373	28489	43421	43421					0.029118057113237228
TGKLFAVK	8	Unmodified	_TGKLFAVK_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.2704772949219	2	432.271096	862.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.698	1	24.698	24.198	25.198	0								0	0	0	1.7419	1	7328	7328		37.159	3.6435	1				42872	6938	28374	28490	43422	43422					0.09087580628079195
TGKLGQLKY	9	Unmodified	_TGKLGQLKY_					0	0	0			REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5343017578125	3	336.53432	1006.58113	0.51637	0.00017377	-1.1385	-0.00038316	-0.62218	-0.00020938	336.5344128448669	18.861	4.3428	18.861	18.75	23.093	0					349	101	5	0	0	0	0.57706	1	6254	6254		24.519	4.5224	1	882170000	+		42873	16581	28375	28491	43423	43423					0.0781033333993264
TGKLGQLKY	9	Unmodified	_TGKLGQLKY_					0	0	0			REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.593	1	52.593	52.093	53.093	0								0	0	0	0.37496	1	19362	19362		19.104	0	1		+		42874	16581	28375	28491	43424	43424					0.0781033333993264
TGKPGVPV	8	Unmodified	_TGKPGVPV_					0	0	0		ENST00000472880.1_1_20:61467424-61467763:+|nuORF;ENST00000469802.5_1_20:61464332-61467763:+|nuORF	ENST00000472880.1_1_20:61467424-61467763:+|nuORF	ENST00000472880.1_1_20:61467424-61467763:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	754.4434204101562	1	754.445766	753.438489	-1.655	-0.0012486	-0.60167	-0.00045393	-2.2567	-0.0017025	754.4450495395268	42.412	0.52393	42.412	41.996	42.52	0					29	25	2	0	0	0	0.78751	1	16577	16577		12.207	3.3845	1	98686			42875	9832	28376	28492	43425	43425					0.05190745668562613
TGKPLSRCGK	10	Unmodified	_TGKPLSRCGK_					0	0	0		nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000444502.5_1_22:22312780-22313668:-|nuORF;ENST00000457179.5_1_22:22311488-22316996:-|nuORF	nc|ENSG00000100038|O95985-3|TOP3B	nc|ENSG00000100038|O95985-3|TOP3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.5309753417969	3	349.530693	1045.57025	0.17375	6.0732E-05	0.32287	0.00011285	0.49663	0.00017359	349.5308763652056	22.021	0.22274	22.021	21.942	22.165	0					9	6	2	0	0	0	0.70967	1	6170	6170		20.837	2.5751	1	95885			42876	1967	28377	28493	43426	43426					0.04928607694000675
TGKSALQEVEK	11	Unmodified	_TGKSALQEVEK_					0	0	0			REV__ENSG00000123165|ENST00000371124|ACTRT1	REV__ENSG00000123165|ENST00000371124|ACTRT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.2192687988281	3	397.218949	1188.63502	0.91502	0.00036346	-0.0046562	-1.8495E-06	0.91037	0.00036161	397.21892835079035	16.862	0.13243	16.862	16.78	16.913	0					5	3	2	0	0	0	0.63225	1	4664	4664		34.087	34.087	1	545490	+		42877	14355	28378	28494	43427	43427					0.048244609809898975
TGKSTKTAQ	9	Unmodified	_TGKSTKTAQ_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2554016113281	2	461.253631	920.49271	2.5528	0.0011775	1.1923	0.00054993	3.745	0.0017274	461.2542662944802	34.368	0.75185	34.368	34.212	34.964	0					47	15	4	0	0	0	0.037569	1	13152	13152		101.6	13.846	1	25539000			42878	1644	28379	28495	43428	43428					0.02928293029458473
TGKTIVGLHI	10	Unmodified	_TGKTIVGLHI_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.8818054199219	3	346.88172	1037.62333	0.39521	0.00013709	0.19827	6.8777E-05	0.59348	0.00020587	346.8817329516747	20.254	0.18679	20.254	20.168	20.355	0					8	6	2	0	0	0	0.70274	1	5395	5395		21.686	1.6553	1	56473			42879	3651	28380	28496	43429	43429					0.10602308748320866
TGKTKEQI	8	Unmodified	_TGKTKEQI_					0	0	0		tr|U7T1I1|U7T1I1_FUSNUATP-dependentClpproteaseproteolyticsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpPPE=3SV=1	tr|U7T1I1|U7T1I1_FUSNUATP-dependentClpproteaseproteolyticsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpPPE=3SV=1	tr|U7T1I1|U7T1I1_FUSNUATP-dependentClpproteaseproteolyticsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpPPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.2559509277344	2	452.758549	903.502546	-1.1958	-0.0005414	-1.4045	-0.00063592	-2.6003	-0.0011773	452.75891981297224	22.203	0.29394	22.203	22.007	22.3	0					14	9	2	0	0	0	0.72524	1	6464	6464		30.318	2.4355	1	202790			42880	22918	28381	28497	43430	43430					0.04693481034848901
TGKWGKTVI	9	Unmodified	_TGKWGKTVI_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;nc|ENSG00000139219|P02458-3|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	330.5307312011719	3	330.530798	988.570566	-0.7028	-0.0002323	0.54813	0.00018118	-0.15466	-5.1121E-05	330.53095826307333	20.688	0.24091	20.688	20.573	20.814	0					21	7	4	0	0	0	0.5879	1	5809	5809		23.523	0	1	1768900			42881	4316	28382	28498	43431	43431					0.07582350685515848
TGLAIQYAL	9	Unmodified	_TGLAIQYAL_					0	0	0		nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.271728515625	2	475.271293	948.528032	2.3208	0.001103	-1.8808	-0.00089391	0.43994	0.00020909	475.27055486853254	38.064	0.28185	38.064	37.92	38.202	0					9	6	2	0	0	0	0.37197	1	14947	14947		44.117	5.3632	1	182680			42882	3798	28383	28499	43432	43432					0.05170955557275647
TGLEVWTERDR	11	Unmodified	_TGLEVWTERDR_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.56591796875	3	454.565119	1360.67353	-0.1308	-5.9456E-05	1.4943	0.00067925	1.3635	0.00061979	454.5660190719869	21.534	0.16804	21.534	21.424	21.592	0					7	3	3	0	0	0	0.59204	1	7167	7167		37.508	5.8739	1	455590			42883	4883	28384	28500	43433	43433					0.007617666155056213
TGLEVWTERDR	11	Unmodified	_TGLEVWTERDR_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.5660095214844	3	454.565119	1360.67353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.574	1	21.574	21.074	22.074	0								0	0	0	0.2652	1	7044	7044		56.632	15.552	1				42884	4883	28384	28500	43434	43434					0.007617666155056213
TGLFFSHIVAA	11	Unmodified	_TGLFFSHIVAA_					0	0	0		ENST00000405201.5_1_12:124809292-124809376:-|nuORF	ENST00000405201.5_1_12:124809292-124809376:-|nuORF	ENST00000405201.5_1_12:124809292-124809376:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.21429443359375	3	388.213358	1161.61824	0.52143	0.00020243	-1.7784	-0.0006904	-1.257	-0.00048797	388.2141569445552	32.055	1.1742	32.055	31.701	32.875	0					61	23	4	0	0	0	0.50799	1	11942	11942		43.651	2.8726	1	970800			42885	9273	28385	28501	43435	43435					0.04390004885726739
TGLFGPPCKC	10	Unmodified	_TGLFGPPCKC_					0	0	0			REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	341.4992370605469	3	341.498113	1021.47251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.293	1	17.293	16.793	17.793	0								0	0	0	0.40446	1	4307	4307		27.047	0	1		+		42886	16023	28386	28502	43436	43436					-0.037369172263424844
TGLGAAPVVA	10	Unmodified	_TGLGAAPVVA_					0	0	0			REV__ENST00000403796.6_1_11:124932967-124946675:+|nuORF	REV__ENST00000403796.6_1_11:124932967-124946675:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.250732421875	2	428.25036	854.486168	-0.95497	-0.00040897	0.034141	1.4621E-05	-0.92083	-0.00039435	428.2504830254	22.869	0.13684	22.869	22.748	22.884	0					9	5	2	0	0	0	0.57532	1	6769	6769		37.159	5.2042	1	32730	+		42887	18961	28387	28503	43437	43437					0.053103998687561216
TGLGAGQLT	9	Unmodified	_TGLGAGQLT_					0	0	0			REV__nc|ENSG00000204463|P46379-2|BAG6	REV__nc|ENSG00000204463|P46379-2|BAG6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.2247314453125	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.715	1	16.715	16.215	17.215	0								0	0	0	0.099216	1	3858	3858		71.877	0	1		+		42888	17486	28388	28504	43438	43438					0.018572364549982012
TGLGKYFQ	8	Unmodified	_TGLGKYFQ_					0	0	0		nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2422180175781	2	457.242535	912.470518	-0.62395	-0.0002853	0.44652	0.00020417	-0.17743	-8.1128E-05	457.24266476935844	36.455	0.34432	36.455	36.369	36.713	0					28	9	4	0	0	0	0.26534	1	13737	13737		94.006	20.032	1	2749800			42889	6822	28389	28505	43439	43439					0.010781133517070884
TGLGKYFQ	8	Unmodified	_TGLGKYFQ_					0	0	0		nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.24212646484375	2	457.242535	912.470518	0.72188	0.00033007	-0.93228	-0.00042628	-0.2104	-9.6202E-05	457.24208059125925	36.426	0.68483	36.426	36.316	37	0					52	20	5	0	0	0	0.3961	1	14173	14173		71.296	2.5089	1	6069200			42890	6822	28389	28505	43440	43440					0.010781133517070884
TGLKLIMSC	9	Unmodified	_TGLKLIMSC_					0	0	0		USP38|p.N109T|1|0.09|ENSG00000170185|chr4:143185776-143185776|A/C|missense_variant	USP38|p.N109T|1|0.09|ENSG00000170185|chr4:143185776-143185776|A/C|missense_variant	USP38|p.N109T|1|0.09|ENSG00000170185|chr4:143185776-143185776|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.51007080078125	3	322.51013	964.508559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.138	1	14.138	13.638	14.638	0								0	0	0	0.34845	1	3602	3602		25.574	0	1				42891	23098	28390	28506	43441	43441					0.024885399505137684
TGLPEYDYHGW	11	Unmodified	_TGLPEYDYHGW_					0	0	0			REV__ENST00000497161.1_1_10:86008738-86014907:+|nuORF	REV__ENST00000497161.1_1_10:86008738-86014907:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.53204345703125	3	446.531415	1336.57242	0.14771	6.5958E-05	1.4745	0.0006584	1.6222	0.00072435	446.5319699125985	17.527	0.13247	17.527	17.469	17.602	0					7	4	2	0	0	0	0.63135	1	4203	4203		43.651	9.5643	1	158940	+		42892	15392	28391	28507	43442	43442					-0.08240685087184829
TGLSIHLGPA	10	Unmodified	_TGLSIHLGPA_					0	0	0		SAMD1|p.R402H|1|0.46|ENSG00000141858|chr19:14088511-14088511|C/T|missense_variant	SAMD1|p.R402H|1|0.46|ENSG00000141858|chr19:14088511-14088511|C/T|missense_variant	SAMD1|p.R402H|1|0.46|ENSG00000141858|chr19:14088511-14088511|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2686462402344	2	483.274367	964.53418	0.59805	0.00028902	-3.0477	-0.0014729	-2.4496	-0.0011838	483.2722996131072	34.753	0.35331	34.753	34.652	35.005	0					18	9	4	0	0	0	0.51121	1	13061	13061		44.117	1.7207	1	349080			42893	22372	28392	28508	43443	43443					0.050494737888243435
TGLSKHVED	9	Unmodified	_TGLSKHVED_					0	0	0		ENST00000495765.1_1_7:99569363-99573643:-|nuORF;ENSG00000160862|ENST00000292401|AZGP1	ENST00000495765.1_1_7:99569363-99573643:-|nuORF	ENST00000495765.1_1_7:99569363-99573643:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.25286865234375	2	493.251089	984.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.861	1	36.861	36.361	37.361	0								0	0	0	0.29774	1	14385	14385		35.618	0.41757	1				42894	5389	28393	28509	43444	43444					-0.005240108331349802
TGLSLCTPVT	10	Unmodified	_TGLSLCTPVT_					0	0	0		ENSG00000213024|ENST00000352066|NUP62	ENSG00000213024|ENST00000352066|NUP62	ENSG00000213024|ENST00000352066|NUP62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.75787353515625	2	496.260068	990.505582	2.877	0.0014278	-1.4937	-0.00074129	1.3833	0.00068647	496.2621417063045	30.185	0.46149	30.185	29.963	30.425	0					27	9	5	0	0	0	0.30737	1	11124	11124		66.429	7.6473	1	2272700			42895	7779	28394	28510	43445	43445					0.009949880973749714
TGLSTAVLAA	10	Unmodified	_TGLSTAVLAA_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.2607421875	2	452.260925	902.507297	0.37915	0.00017148	-0.36323	-0.00016427	0.01592	7.2001E-06	452.260669489465	27.312	0.26404	27.312	27.139	27.403	0					9	6	2	0	0	0	0.60076	1	8911	8911		34.173	0	1	86859			42896	7795	28395	28511	43446	43446					0.052143651776077604
TGLSTQGLL	9	Unmodified	_TGLSTQGLL_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.2529296875	2	445.2531	888.491647	-0.18651	-8.3043E-05	0.26595	0.00011841	0.079438	3.537E-05	445.25294562847705	25.511	0.41432	25.511	25.205	25.62	0					18	8	3	0	0	0	0.25716	1	9029	9029		54.776	1.8396	1	517370			42897	5046	28396	28512	43447	43447					0.04294078660575451
TGLSVAAAAV	10	Unmodified	_TGLSVAAAAV_					0	0	0			REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2474670410156	2	430.247818	858.481082	0.21877	9.4125E-05	-0.62	-0.00026675	-0.40123	-0.00017263	430.24750460925503	22.667	0.1823	22.667	22.531	22.714	0					7	4	2	0	0	0	0.069461	1	7386	7386		102.77	12.172	1	162570	+		42898	19053	28397	28513	43448	43448					0.04618096006140604
TGLSVAAAAV	10	Unmodified	_TGLSVAAAAV_					0	0	0			REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2479248046875	2	430.247818	858.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.395	1	22.395	21.895	22.895	0								0	0	0	0.16252	1	6585	6585		68.787	12.353	1		+		42899	19053	28397	28513	43449	43449					0.04618096006140604
TGLSVAAAAV	10	Unmodified	_TGLSVAAAAV_					0	0	0			REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2486572265625	2	430.247818	858.481082	-0.50545	-0.00021747	0.094624	4.0712E-05	-0.41083	-0.00017676	430.24787635475616	22.526	0.36063	22.526	22.367	22.728	0					13	7	2	0	0	0	0.043105	1	7627	7627		111.65	10.396	1	556060	+		42900	19053	28397	28513	43450	43450					0.04618096006140604
TGLSVAAAAV	10	Unmodified	_TGLSVAAAAV_					0	0	0			REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	REV__ENST00000418609.5_1_4:186508579-186508693:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.24749755859375	2	430.247818	858.481082	-0.44994	-0.00019359	-0.23141	-9.9565E-05	-0.68135	-0.00029315	430.24774413816897	22.547	0.4685	22.547	22.337	22.805	0					17	9	3	0	0	0	0.28723	1	7530	7530		68.787	0	1	561960	+		42901	19053	28397	28513	43451	43451					0.04618096006140604
TGLTGLTVL	9	Unmodified	_TGLTGLTVL_					0	0	0			REV__nc|ENSG00000131269|O75027-3|ABCB7	REV__nc|ENSG00000131269|O75027-3|ABCB7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7653503417969	2	437.765843	873.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.093	1	35.093	34.593	35.593	0								0	0	0	0.28996	1	11501	11501		37.159	0	1		+		42902	14615	28398	28514	43452	43452					0.07531553182980133
TGLTSPEP	8	Unmodified	_TGLTSPEP_					0	0	0		nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.2043762207031	2	401.203076	800.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.137	1	34.137	33.637	34.637	0								0	0	0	1.7419	1	11145	11145		19.36	0	1				42903	11799	28399	28515	43453	43453					-0.016581586732399956
TGLVLSSLTH	10	Unmodified	_TGLVLSSLTH_					0	0	0			REV__ENST00000307630.4_1_7:75958368-75958587:-|nuORF	REV__ENST00000307630.4_1_7:75958368-75958587:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.19781494140625	3	343.197596	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.233	1	40.233	39.733	40.733	0								0	0	0	0.38879	1	15959	15959		33.922	2.2874	1		+		42904	18250	28400	28516	43454	43454					0.058737256147196604
TGNDWVPVT	9	Unmodified	_TGNDWVPVT_					0	0	0		ENSG00000244754|ENST00000267068|N4BP2L2;nc|ENSG00000244754|Q92802-2|N4BP2L2	ENSG00000244754|ENST00000267068|N4BP2L2	ENSG00000244754|ENST00000267068|N4BP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.73919677734375	2	494.740357	987.46616	-0.42851	-0.000212	-1.9527	-0.00096607	-2.3812	-0.0011781	494.7394725986527	16.489	0.2316	16.489	16.303	16.534	0					10	5	3	0	0	0	0.33044	1	4487	4487		47.657	5.2612	1	554980			42905	7971	28401	28517	43455	43455					-0.028073958618506367
TGNELEEQR	9	Unmodified	_TGNELEEQR_					0	0	0			REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.1711730957031	3	359.171999	1074.49417	0.72454	0.00026024	-3.474	-0.0012478	-2.7495	-0.00098754	359.1707826030976	17.226	0.21263	17.226	17.145	17.357	0					6	5	2	0	0	0	0.54081	1	4837	4837		28.081	5.5199	1	230730	+		42906	12994	28402	28518	43456	43456					-0.04010117672441993
TGNIIVLV	8	Unmodified	_TGNIIVLV_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;FSHR|p.T555Wfs*89|1|0.07|ENSG00000170820|chr2:48963159-48963160|-/TCCAA|frameshift_variant;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.7613525390625	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.932	1	50.932	50.432	51.432	0								0	0	0	1.7419	1	19010	19010		19.36	5.5846	1				42907	6259	28403	28519	43457	43457					0.09099874391176854
TGNKPESVQ	9	Unmodified	_TGNKPESVQ_					0	0	0			REV__PHF14|p.K182Nfs*19|1|0.14|ENSG00000106443|chr7:10982799-10982799|A/-|frameshift_variant	REV__PHF14|p.K182Nfs*19|1|0.14|ENSG00000106443|chr7:10982799-10982799|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2430725097656	2	480.243264	958.471974	0.049208	2.3632E-05	-0.83202	-0.00039957	-0.78281	-0.00037594	480.2428106847436	14.214	0.097524	14.214	14.157	14.255	0					6	4	2	0	0	0	0.53064	1	2898	2898		29.17	3.596	1	51759	+		42908	21362	28404	28520	43458	43458					-0.008922973501853448
TGNPTVIKM	9	Unmodified	_TGNPTVIKM_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.7623596191406	2	480.762778	959.511002	0.073225	3.5204E-05	-0.99188	-0.00047686	-0.91865	-0.00044165	480.76237664253915	30.224	0.2392	30.224	30.084	30.323	0					13	8	3	0	0	0	0.13726	1	9589	9589		70.816	8.7088	1	191900			42909	4398;4684	28405	28521	43459	43459					0.02962711679822405
TGNPTVIKM	9	Unmodified	_TGNPTVIKM_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.762451171875	2	480.762778	959.511002	-0.15158	-7.2873E-05	-1.8518	-0.00089029	-2.0034	-0.00096317	480.76255905773115	30.523	0.52291	30.523	30.354	30.877	0					27	12	4	0	0	0	0.054723	1	11004	11004		93.598	8.6821	1	961530			42910	4398;4684	28405	28521	43460	43460					0.02962711679822405
TGNPTVIKM	9	Unmodified	_TGNPTVIKM_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7622375488281	2	480.762778	959.511002	-1.3671	-0.00065724	0.4376	0.00021038	-0.92948	-0.00044686	480.76308030903584	30.28	0.33425	30.28	30.118	30.452	0					28	11	3	0	0	0	0.13726	1	9896	9896		70.816	4.3869	1	307920			42911	4398;4684	28405	28521	43461	43461					0.02962711679822405
TGNPTVIKM	9	Unmodified	_TGNPTVIKM_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7625427246094	2	480.762778	959.511002	0.68186	0.00032781	-3.0489	-0.0014658	-2.3671	-0.001138	480.7620516122799	30.486	0.6492	30.486	30.092	30.742	0					48	14	5	0	0	0	0.014413	1	11397	11397		131.62	40.84	1	1773300			42912	4398;4684	28405	28521	43462	43462					0.02962711679822405
TGNPTVIKM	9	Unmodified	_TGNPTVIKM_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7628479003906	2	480.762778	959.511002	-0.29866	-0.00014359	-0.8626	-0.00041471	-1.1613	-0.00055829	480.76251735358386	30.257	0.2073	30.257	30.145	30.352	0					11	5	3	0	0	0	0.13726	1	10273	10273		70.816	8.7088	1	203070			42913	4398;4684	28405	28521	43463	43463					0.02962711679822405
TGNPTVIKM	9	Unmodified	_TGNPTVIKM_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.7626037597656	2	480.762778	959.511002	0.92261	0.00044355	-1.8247	-0.00087724	-0.90208	-0.00043369	480.76207878985537	30.469	0.44894	30.469	30.18	30.629	0					20	9	3	0	0	0	0.040209	1	11277	11277		99.013	14.097	1	972910			42914	4398;4684	28405	28521	43464	43464					0.02962711679822405
TGNRHGHGR	9	Unmodified	_TGNRHGHGR_					0	0	0			REV__ENSG00000110169|ENST00000265983|HPX	REV__ENSG00000110169|ENST00000265983|HPX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2512512207031	2	496.25008	990.485608	2.8685	0.0014235	-0.47794	-0.00023718	2.3905	0.0011863	496.2498078225969	21.662	0.31838	21.662	21.454	21.772	0					17	6	3	0	0	0	0.35021	1	7073	7073		45.972	1.8554	1	1180200	+		42915	13928	28406	28522	43465	43465					-0.010015820077114768
TGNSTAVLTL	10	Unmodified	_TGNSTAVLTL_					0	0	0			REV__ENST00000532305.1_1_11:9546777-9549157:+|nuORF	REV__ENST00000532305.1_1_11:9546777-9549157:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	326.1822204589844	3	326.181835	975.523675	0.6383	0.0002082	0.46226	0.00015078	1.1006	0.00035898	326.1819787241463	14.542	0.21004	14.542	14.456	14.666	0					7	5	2	0	0	0	0.60076	1	3574	3574		31.634	2.4847	1	967780	+		42916	16125	28407	28523	43466	43466					0.034934463437252816
TGNSTAVLTL	10	Unmodified	_TGNSTAVLTL_					0	0	0			REV__ENST00000532305.1_1_11:9546777-9549157:+|nuORF	REV__ENST00000532305.1_1_11:9546777-9549157:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	326.1822204589844	3	326.181835	975.523675	1.7031	0.00055553	-0.5359	-0.0001748	1.1672	0.00038073	326.18164881311384	14.449	0.21792	14.449	14.391	14.609	0					7	4	3	0	0	0	0.63073	1	3608	3608		35.152	7.0705	1	771970	+		42917	16125	28407	28523	43467	43467					0.034934463437252816
TGNTSPFGHPF	11	Unmodified	_TGNTSPFGHPF_					0	0	0		CREBBP|p.Q278H|1|0.06|ENSG00000005339|chr16:3810744-3810744|C/A|missense_variant	CREBBP|p.Q278H|1|0.06|ENSG00000005339|chr16:3810744-3810744|C/A|missense_variant	CREBBP|p.Q278H|1|0.06|ENSG00000005339|chr16:3810744-3810744|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.8482971191406	3	387.848967	1160.52507	0.16059	6.2286E-05	-1.9905	-0.00077202	-1.8299	-0.00070973	387.8485508648162	32.825	0.41975	32.825	32.555	32.974	0					14	8	2	0	0	0	0.55715	1	12507	12507		40.058	9.4893	1	189050			42918	692	28408	28524	43468	43468					-0.04876919567527693
TGPAEPASSL	10	Unmodified	_TGPAEPASSL_					0	0	0			REV__nc|ENSG00000103549|O75150-4|RNF40	REV__nc|ENSG00000103549|O75150-4|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.233642578125	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.695	1	41.695	41.195	42.195	0								0	0	0	0.28704	1	16601	16601		52.937	0.63753	1		+		42919	13688	28409	28525	43469	43469					-0.016911020987663505
TGPAGPEGKE	10	Unmodified	_TGPAGPEGKE_					0	0	0		MAST2-HP1BP3|1|fusion;nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2;MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	MAST2-HP1BP3|1|fusion;ENSG00000086015|ENST00000361297|MAST2	ENSG00000086015|ENST00000361297|MAST2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.72967529296875	2	471.729989	941.445425	-0.56813	-0.000268	-0.25206	-0.00011891	-0.82019	-0.00038691	471.7298372173746	21.534	0.14902	21.534	21.435	21.584	0					5	3	2	0	0	0	0.58189	1	6254	6254		36.447	0	1	173550			42920	11349;1741	28410	28526	43470	43470					-0.02763986241529892
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53448486328125	3	336.53432	1006.58113	0.2415	8.1274E-05	-0.41542	-0.0001398	-0.17392	-5.853E-05	336.5341853664852	30.284	0.7726	30.284	29.861	30.634	0					43	28	2	0	0	0	0.69166	1	9654	9654		21.686	4.2177	1	134350	+		42921	15529	28411	28527	43471	43471					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53399658203125	3	336.53432	1006.58113	0.24134	8.1219E-05	-0.26303	-8.852E-05	-0.021696	-7.3014E-06	336.5341773713489	36.287	0.80146	36.287	35.854	36.655	0					59	40	2	0	0	0	0.73274	1	11820	11820		16.007	0.67366	1	129860	+		42922	15529	28411	28527	43472	43472					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53472900390625	3	336.53432	1006.58113	0.24132	8.1212E-05	-0.21881	-7.3637E-05	0.022511	7.5757E-06	336.5341849519129	39.326	0.74085	39.326	39.127	39.868	0					50	43	2	0	0	0	0.73274	1	12748	12748		16.007	0	1	63312	+		42923	15529	28411	28527	43473	43473					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.22	1	46.22	45.72	46.72	0								0	0	0	0.4201	1	14276	14276		16.007	0	1		+		42924	15529	28411	28527	43474	43474					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.86895751953125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.383	1	24.383	23.883	24.883	0								0	0	0	0.40002	1	7456	7456		28.081	0	1		+		42925	15529	28411	28527	43475	43475					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5339660644531	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.712	1	38.712	38.212	39.212	0								0	0	0	0.4201	1	13045	13045		22.58	10.944	1		+		42926	15529	28411	28527	43476	43476					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.915	1	27.915	27.415	28.415	0								0	0	0	0.4201	1	10167	10167		28.081	8.051	1		+		42927	15529	28411	28527	43477	43477					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5339660644531	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.727	1	28.727	28.227	29.227	0								0	0	0	0.4201	1	10559	10559		21.686	0	1		+		42928	15529	28411	28527	43478	43478					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.742	1	52.742	52.242	53.242	0								0	0	0	0.4201	1	19395	19395		16.717	7.5345	1		+		42929	15529	28411	28527	43479	43479					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.582	1	36.582	36.082	37.082	0								0	0	0	0.4201	1	14230	14230		16.007	0.67366	1		+		42930	15529	28411	28527	43480	43480					0.0781033333993264
TGPALHTIVV	10	Unmodified	_TGPALHTIVV_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.922	1	47.922	47.422	48.422	0								0	0	0	0.4201	1	19081	19081		22.58	1.7425	1		+		42931	15529	28411	28527	43481	43481					0.0781033333993264
TGPAPPRRR	9	Unmodified	_TGPAPPRRR_					0	0	0		ENST00000465952.5_1_13:31191850-31192063:+|nuORF	ENST00000465952.5_1_13:31191850-31192063:+|nuORF	ENST00000465952.5_1_13:31191850-31192063:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.133	1	53.133	52.633	53.633	0								0	0	0	0.35507	1	19475	19475		24.519	0	1				42932	9782	28412	28528	43482	43482					0.0754192272564751
TGPAPPRRR	9	Unmodified	_TGPAPPRRR_					0	0	0		ENST00000465952.5_1_13:31191850-31192063:+|nuORF	ENST00000465952.5_1_13:31191850-31192063:+|nuORF	ENST00000465952.5_1_13:31191850-31192063:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53411865234375	3	336.533425	1006.57845	2.5147	0.00084627	0.079035	2.6598E-05	2.5937	0.00087287	336.5334198063538	56.837	0.98361	56.837	56.018	57.002	0					87	60	2	0	0	0	0.61124	1	21201	21201		23.523	0	1	106600			42933	9782	28412	28528	43483	43483					0.0754192272564751
TGPEGHAL	8	Unmodified	_TGPEGHAL_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;CRMP1|p.F275Lfs*28|1|0.3|ENSG00000072832|chr4:5839665-5839665|A/-|frameshift_variant;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.195556640625	2	391.195585	780.376617	0.13798	5.3979E-05	-0.23833	-9.3232E-05	-0.10034	-3.9254E-05	391.19544145120176	21.184	0.26048	21.184	20.98	21.24	0					11	5	3	0	0	0	0.49887	1	6971	6971		60.294	10.269	1	135230			42934	1503	28413	28529	43484	43484					-0.02235605750581726
TGPEGHVL	8	Unmodified	_TGPEGHVL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;ENSG00000151640|ENST00000338492|DPYSL4;nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.2113952636719	2	405.211235	808.407917	0.96821	0.00039233	-0.59152	-0.00023969	0.37669	0.00015264	405.2108579758575	25.065	0.44547	25.065	24.98	25.426	0					22	10	3	0	0	0	0.64096	1	8530	8530		42.474	3.6683	1	539120			42935	1881;844	28414	28530	43485	43485					-0.003950327164830014
TGPEGHVL	8	Unmodified	_TGPEGHVL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;ENSG00000151640|ENST00000338492|DPYSL4;nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.211181640625	2	405.211235	808.407917	0.044239	1.7926E-05	-0.29939	-0.00012132	-0.25515	-0.00010339	405.21115019225874	25.054	0.3606	25.054	24.811	25.171	0					16	7	3	0	0	0	0.52345	1	8837	8837		57.811	7.7867	1	217530			42936	1881;844	28414	28530	43486	43486					-0.003950327164830014
TGPEGHVL	8	Unmodified	_TGPEGHVL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;ENSG00000151640|ENST00000338492|DPYSL4;nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.2113952636719	2	405.211235	808.407917	0.1464	5.9321E-05	-0.85108	-0.00034487	-0.70468	-0.00028555	405.2111404465916	24.836	0.28805	24.836	24.741	25.029	0					8	6	2	0	0	0	0.65276	1	7820	7820		40.573	0	1	49732			42937	1881;844	28414	28530	43487	43487					-0.003950327164830014
TGPEGHVL	8	Unmodified	_TGPEGHVL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;ENSG00000151640|ENST00000338492|DPYSL4;nc|ENSG00000113657|Q14195|DPYSL3;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.2110595703125	2	405.211235	808.407917	-0.11026	-4.4677E-05	-0.43992	-0.00017826	-0.55017	-0.00022294	405.21113003856834	24.9	0.24113	24.9	24.814	25.055	0					8	5	2	0	0	0	0.59411	1	7836	7836		50.025	16.509	1	58992			42938	1881;844	28414	28530	43488	43488					-0.003950327164830014
TGPIPLAPNFG	11	Unmodified	_TGPIPLAPNFG_					0	0	0			REV__tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	REV__tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.86566162109375	3	361.865958	1082.57605	-0.098083	-3.5493E-05	-0.24548	-8.8829E-05	-0.34356	-0.00012432	361.865880521978	32.73	0.23155	32.73	32.63	32.862	0					11	6	3	0	0	0	0.77007	1	11404	11404		18.531	0	1	133960	+		42939	21940	28415	28531	43489	43489					0.03806029477323136
TGPLMCAYK	9	Unmodified	_TGPLMCAYK_					0	0	0		PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1	PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant	PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2384338378906	2	492.238081	982.461609	0.79483	0.00039125	-0.91782	-0.00045179	-0.12299	-6.0539E-05	492.2376812615951	33.151	0.30736	33.151	33.119	33.426	0					11	8	2	0	0	0	0.45358	1	12242	12242		37.159	1.5408	1	195560			42940	2634	28416	28532	43490	43490					-0.03032319600640676
TGPTPAVAR	9	Unmodified	_TGPTPAVAR_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2445373535156	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.7	1	21.7	21.2	22.2	0								0	0	0	0.29774	1	6273	6273		35.618	1.4457	1		+		42941	17842	28417	28533	43491	43491					0.037166315832337204
TGPTRFFLF	9	Unmodified	_TGPTRFFLF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2937622070312	2	543.292559	1084.57057	3.6249	0.0019694	-1.6917	-0.0009191	1.9332	0.0010503	543.2914618590075	55.179	0.40291	55.179	55.02	55.423	0					29	24	2	0	0	0	0.30951	1	20923	20923		49.442	3.4896	1	61736			42942	1071	28418	28534	43492	43492					0.03166350685501129
TGPTVVFLR	9	Unmodified	_TGPTVVFLR_					0	0	0			REV__ENSG00000119227|ENST00000412723|PIGZ	REV__ENSG00000119227|ENST00000412723|PIGZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.5307312011719	3	330.530798	988.570566	0.54482	0.00018008	-0.58192	-0.00019234	-0.037103	-1.2264E-05	330.5306136727008	20.905	0.41022	20.905	20.798	21.208	0					29	8	5	0	0	0	0.57706	1	6933	6933		24.519	7.0512	1	5621000	+		42943	14236	28419	28535	43493	43493					0.0758235068550448
TGPVMPVR	8	Unmodified	_TGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.73883056640625	2	428.739105	855.463658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.001	1	26.001	25.501	26.501	0								0	0	0	1.7419	1	7850	7850		65.803	17.888	1				42944	5997	28420	28536	43494	43494					0.030144771994969233
TGPVMPVR	8	Unmodified	_TGPVMPVR_					0	0	0		ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	ENST00000484610.5_1_16:89627907-89629447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.7388916015625	2	428.739105	855.463658	0.83303	0.00035715	-1.1419	-0.00048957	-0.30884	-0.00013241	428.73853291580366	26.239	0.38214	26.239	25.957	26.34	0					14	9	2	0	0	0	0.46013	1	9026	9026		64.207	9.4426	1	290680			42945	5997	28420	28536	43495	43495					0.030144771994969233
TGQGLTHPKDL	11	Unmodified	_TGQGLTHPKDL_					0	0	0		ENST00000533210.5_1_8:144650334-144650907:-|nuORF	ENST00000533210.5_1_8:144650334-144650907:-|nuORF	ENST00000533210.5_1_8:144650334-144650907:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	389.5435791015625	3	389.543655	1165.60914	0.55958	0.00021798	-0.71763	-0.00027955	-0.15804	-6.1564E-05	389.5433692022024	21.742	0.16515	21.742	21.648	21.813	0					12	5	3	0	0	0	0.63225	1	6022	6022		34.087	1.2741	1	253110			42946	10460	28421	28537	43496	43496					0.032956115293927724
TGQPKGFADK	10	Unmodified	_TGQPKGFADK_					0	0	0			REV__ENST00000403509.1_1_6:54467537-54467825:-|nuORF	REV__ENST00000403509.1_1_6:54467537-54467825:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.1852722167969	3	350.185579	1047.53491	0.17	5.9531E-05	-0.31845	-0.00011152	-0.14845	-5.1985E-05	350.1852772811656	18.069	0.10712	18.069	18.026	18.133	0					7	3	3	0	0	0	0.67098	1	4445	4445		18.531	0	1	98084	+		42947	18959	28422	28538	43497	43497					0.013042684378433478
TGQTIVQITGK	11	Unmodified	_TGQTIVQITGK_					0	0	0			REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF	REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	573.8319702148438	2	573.32987	1144.64519	1.066	0.00061118	-0.44538	-0.00025535	0.62065	0.00035583	573.3296766894616	33.972	0.22981	33.972	33.885	34.114	0					23	10	3	0	0	0	0.23242	1	11074	11074		70.399	15.676	1	539010	+		42948	13456	28423	28539	43498	43498					0.0786506870622361
TGRAMLPHE	9	Unmodified	_TGRAMLPHE_					0	0	0		ENST00000318782.8_1_16:3022587-3022926:+|nuORF	ENST00000318782.8_1_16:3022587-3022926:+|nuORF	ENST00000318782.8_1_16:3022587-3022926:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.254150390625	2	506.255651	1010.49675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.284	1	26.284	25.784	26.784	0								0	0	0	0.3368	1	7968	7968		27.882	4.8398	1				42949	8599	28424	28540	43499	43499					-0.008079407484729018
TGRLLKLSSD	10	Unmodified	_TGRLLKLSSD_					0	0	0		nc|ENSG00000159708|Q1X8D7-3|LRRC36;nc|ENSG00000159708|Q1X8D7-2|LRRC36;ENSG00000159708|ENST00000329956|LRRC36	nc|ENSG00000159708|Q1X8D7-3|LRRC36	nc|ENSG00000159708|Q1X8D7-3|LRRC36	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.3164672851562	2	545.316763	1088.61897	0.37596	0.00020502	0.30668	0.00016724	0.68265	0.00037226	545.3167659633775	51.55	1.0552	51.55	51.212	52.267	0					92	64	2	0	0	0	0.66699	1	18545	18545		26.063	8.5954	1	92181			42950	5327	28425	28541	43500	43500					0.07820799534761136
TGRRWTPL	8	Unmodified	_TGRRWTPL_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7793273925781	2	493.780151	985.545748	-1.2697	-0.00062696	-0.44254	-0.00021852	-1.7123	-0.00084548	493.7799104642034	28.208	0.56182	28.208	27.822	28.384	0					52	20	3	0	0	0	0.72381	1	9074	9074		30.504	3.8107	1	518640	+		42951	16046	28426	28542	43501	43501					0.05239715602795059
TGSAERPK	8	Unmodified	_TGSAERPK_					0	0	0			REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	REV__CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.2270812988281	2	423.227417	844.44028	-0.23383	-9.8965E-05	-0.75499	-0.00031953	-0.98882	-0.0004185	423.22720239902293	18.801	0.13947	18.801	18.711	18.85	0					5	3	2	0	0	0	0.67394	1	5845	5845		37.159	1.5408	1	70310	+		42952	12455	28427	28543	43502	43502					0.011837546865194781
TGSAPFGTKI	10	Unmodified	_TGSAPFGTKI_					0	0	0		ENST00000561088.1_1_15:65281344-65281524:-|nuORF	ENST00000561088.1_1_15:65281344-65281524:-|nuORF	ENST00000561088.1_1_15:65281344-65281524:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7681884765625	2	489.766374	977.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.936	1	25.936	25.436	26.436	0								0	0	0	0.38475	1	8094	8094		35.152	3.6222	1				42953	10701	28428	28544	43503	43503					0.028537675519032746
TGSEFVDTK	9	Unmodified	_TGSEFVDTK_					0	0	0		nc|ENSG00000140798|Q96J65-2|ABCC12;ABCC12|p.M936Yfs*84|1|0.32|ENSG00000140798|chr16:48104236-48104237|-/A|frameshift_variant;ABCC12|p.R1075Cfs*54|1|0.38|ENSG00000140798|chr16:48091182-48091183|-/CA|frameshift_variant;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12	nc|ENSG00000140798|Q96J65-2|ABCC12	nc|ENSG00000140798|Q96J65-2|ABCC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2381591796875	2	492.237647	982.460741	-0.033416	-1.6449E-05	0.20205	9.9454E-05	0.16863	8.3006E-05	492.23778666844197	32.931	0.37847	32.931	32.85	33.229	0					16	11	3	0	0	0	0.36892	1	11496	11496		44.377	1.981	1	485170			42954	15	28429	28545	43504	43504					-0.031191194443181303
TGSETKITY	9	Unmodified	_TGSETKITY_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2531433105469	2	500.253297	998.492041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.398	1	25.398	24.898	25.898	0								0	0	0	0.1347	1	8673	8673		63.426	0.1202	1				42955	6474	28430	28546	43505	43505					-0.007265464102374608
TGSETKITY	9	Unmodified	_TGSETKITY_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2530212402344	2	500.253297	998.492041	1.099	0.00054977	1.8335	0.00091723	2.9325	0.001467	500.25252355891126	25.307	0.26867	25.307	25.196	25.464	0					22	5	5	0	0	0	0.13109	1	8853	8853		72.243	17.467	1	1820100			42956	6474	28430	28546	43506	43506					-0.007265464102374608
TGSFRRRK	8	Unmodified	_TGSFRRRK_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5346984863281	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.171	1	54.171	53.671	54.671	0								0	0	0	1.7419	1	20729	20729		16.473	0	1		+		42957	16712	28431	28547	43507	43507					0.07541922725658878
TGSGRFLQSI	10	Unmodified	_TGSGRFLQSI_					0	0	0			REV__ENSG00000105538|ENST00000222145|RASIP1	REV__ENSG00000105538|ENST00000222145|RASIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.290771484375	2	533.288005	1064.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.875	1	35.875	35.375	36.375	0								0	0	0	0.362	1	13934	13934		29.17	0	1		+		42958	13781	28432	28548	43508	43508					0.03175957329199264
TGSKPRTSANS	11	Unmodified	_TGSKPRTSANS_					0	0	0		PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;ENSG00000129292|ENST00000395386|PHF20L1;nc|ENSG00000129292|A8MW92-2|PHF20L1;PHF20L1|p.N322Mfs*42|5|0.3|ENSG00000129292|chr8:132814664-132814664|A/-|frameshift_variant;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;PHF20L1|p.V535*|4|0.38|ENSG00000129292|chr8:132824019-132824019|A/-|frameshift_variant;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant;ENST00000395374.1_1_8:133816039-133823376:+|nuORF	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2858276367188	2	553.283451	1104.55235	3.6416	0.0020148	0.80788	0.00044699	4.4495	0.0024618	553.2838941765662	46.077	0.089832	46.077	46.022	46.111	0					7	4	2	0	0	0	0.48922	1	18443	18443		45.022	0.64502	1	54641			42959	3590	28433	28549	43509	43509					0.004255639728626193
TGSLEPVKE	9	Unmodified	_TGSLEPVKE_					0	0	0		MTERF3|p.M298K|1|0.71|ENSG00000156469|chr8:96245864-96245864|A/T|missense_variant;nc|ENSG00000156469|Q96E29-3|MTERF3;nc|ENSG00000156469|Q96E29-2|MTERF3;ENSG00000156469|ENST00000287025|MTERF3	MTERF3|p.M298K|1|0.71|ENSG00000156469|chr8:96245864-96245864|A/T|missense_variant	MTERF3|p.M298K|1|0.71|ENSG00000156469|chr8:96245864-96245864|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2564697265625	2	480.25584	958.497126	-1.387	-0.0006661	1.3174	0.00063269	-0.069578	-3.3415E-05	480.25644157648736	31.355	0.4285	31.355	31.132	31.56	0					31	16	3	0	0	0	0.24095	1	10338	10338		56.721	0	1	309290			42960	5173	28434	28550	43510	43510					0.016217574523807343
TGSLLLSAVL	10	Unmodified	_TGSLLLSAVL_					0	0	0		nc|ENSG00000106331|O43316-2|PAX4	nc|ENSG00000106331|O43316-2|PAX4	nc|ENSG00000106331|O43316-2|PAX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2997131347656	2	487.30005	972.585547	-0.33571	-0.00016359	0.22129	0.00010783	-0.11442	-5.5758E-05	487.3000640821312	39.431	0.25121	39.431	39.308	39.559	0					14	9	2	0	0	0	0.46215	1	14990	14990		49.442	1.7842	1	221940			42961	11472	28435	28551	43511	43511					0.09815797762848888
TGSPARIALL	10	Unmodified	_TGSPARIALL_					0	0	0			REV__ENST00000567007.5_1_16:67226831-67232023:+|nuORF	REV__ENST00000567007.5_1_16:67226831-67232023:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	333.5377197265625	3	333.537953	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.985	1	19.985	19.485	20.485	0								0	0	0	0.4201	1	5273	5273		28.081	1.0342	1		+		42962	17516	28436	28552	43512	43512					0.09313735714226823
TGSPSSPQQK	10	Unmodified	_TGSPSSPQQK_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2742614746094	2	508.753995	1015.49344	1.1493	0.00058472	-4.3151	-0.0021953	-3.1658	-0.0016106	508.7519070775139	13.644	0.20146	13.644	13.591	13.793	0					6	4	2	0	0	0	0.46128	1	3362	3362		49.536	19.218	1	98926			42963	3854;10156	28437	28553	43513	43513					-0.013689123214703613
TGSRAPVER	9	Unmodified	_TGSRAPVER_					0	0	0			REV__ENST00000421395.1_1:148902042-148902210:+|nuORF	REV__ENST00000421395.1_1:148902042-148902210:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.76434326171875	2	486.764697	971.514842	-0.54678	-0.00026615	1.1818	0.00057524	0.63499	0.00030909	486.7652106751135	18.231	0.31264	18.231	18.125	18.438	0					10	6	2	0	0	0	0.3269	1	5430	5430		47.96	0.30219	1	568360	+		42964	19081	28438	28554	43514	43514					0.027945174978981413
TGSRGHLIVQ	10	Unmodified	_TGSRGHLIVQ_					0	0	0		nc|ENSG00000204624|Q9P2K9-2|DISP3;ENSG00000204624|ENST00000294484|DISP3	nc|ENSG00000204624|Q9P2K9-2|DISP3	nc|ENSG00000204624|Q9P2K9-2|DISP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.5380554199219	3	356.536724	1066.58834	3.069	0.0010942	0.70729	0.00025217	3.7763	0.0013464	356.53691514909764	21.363	0.41582	21.363	21.254	21.67	0					18	8	4	0	0	0	0.52275	1	6954	6954		63.426	10.338	1	882390			42965	7715	28439	28555	43515	43515					0.05771065940371045
TGSRSTVPVR	10	Unmodified	_TGSRSTVPVR_					0	0	0			REV__ENST00000420551.1_1_2:242441106-242447985:-|nuORF	REV__ENST00000420551.1_1_2:242441106-242447985:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2998046875	2	530.298904	1058.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.982	1	13.982	13.482	14.482	0								0	0	0	0.41967	1	2885	2885		24.519	0	1		+		42966	19070	28440	28556	43516	43516					0.05630762077748841
TGSRSVVQAG	10	Unmodified	_TGSRSVVQAG_					0	0	0		nc|ENSG00000196199|Q99549-2|MPHOSPH8;ENST00000496525.1_1_13:20244500-20245123:+|nuORF	nc|ENSG00000196199|Q99549-2|MPHOSPH8	nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.256591796875	2	481.256705	960.498858	0.68466	0.0003295	-1.5542	-0.00074795	-0.86949	-0.00041845	481.25615187540575	12.021	1.3424	12.021	11.954	13.297	0					69	32	5	0	0	0	0.021567	1	2596	2596		124.08	7.1765	1	42988000			42967	11704	28441	28557	43517	43517					0.01702811261009174
TGSSFTNVL	9	Unmodified	_TGSSFTNVL_					0	0	0			REV__ENST00000471680.1_1_1:118476036-118476099:+|nuORF	REV__ENST00000471680.1_1_1:118476036-118476099:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2347106933594	2	463.234907	924.455261	-0.74544	-0.00034531	3.2593	0.0015098	2.5139	0.0011645	463.23494298736955	30.93	0.37492	30.93	30.742	31.117	0					39	13	4	0	0	0	0.071197	1	10195	10195		87.754	18.967	1	300290	+		42968	19483	28442	28558	43518	43518					-0.009987982361280956
TGSSGLPKMIQ	11	Unmodified	_TGSSGLPKMIQ_					0	0	0			REV__ITSN1|p.T1493M|1|0.39|ENSG00000205726|chr21:33882379-33882379|C/T|missense_variant	REV__ITSN1|p.T1493M|1|0.39|ENSG00000205726|chr21:33882379-33882379|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.5351257324219	3	373.533991	1117.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.22	1	13.22	12.72	13.72	0								0	0	0	0.45674	1	2961	2961		13.508	1.9969	1		+		42969	20771	28443	28559	43519	43519					0.02605750908742266
TGSVQKEL	8	Unmodified	_TGSVQKEL_					0	0	0			REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.23687744140625	2	431.23745	860.460347	-0.49152	-0.00021196	-0.74059	-0.00031937	-1.2321	-0.00053133	431.2370582359926	20.357	0.61853	20.357	19.927	20.546	0					20	12	2	0	0	0	0.58597	1	6517	6517		51.335	1.8939	1	502490	+		42970	21578	28444	28560	43520	43520					0.024535056264767263
TGTGILALVEA	11	Unmodified	_TGTGILALVEA_					0	0	0		nc|ENSG00000128872|Q9NZR1-2|TMOD2;ENSG00000128872|ENST00000249700|TMOD2	nc|ENSG00000128872|Q9NZR1-2|TMOD2	nc|ENSG00000128872|Q9NZR1-2|TMOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3023071289062	2	522.800414	1043.58628	0.086305	4.512E-05	0.58733	0.00030706	0.67364	0.00035218	522.8007439619176	42.952	0.17242	42.952	42.874	43.047	0					13	9	2	0	0	0	0.62108	1	16237	16237		35.152	7.0705	1	98805			42971	3566	28445	28561	43521	43521					0.06622592411895312
TGTGTLLLI	9	Unmodified	_TGTGTLLLI_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.77392578125	2	444.773668	887.532783	0.79139	0.00035199	-0.8761	-0.00038967	-0.084713	-3.7678E-05	444.7732733485852	48.886	0.29803	48.886	48.768	49.066	0					38	16	3	0	0	0	0.043797	1	19366	19366		97.473	0	1	877730			42972	1185	28446	28562	43522	43522					0.08451839700069286
TGTGVPLRK	9	Unmodified	_TGTGVPLRK_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586;REV__KIAA0586|p.K791Rfs*14|1|0.33|ENSG00000100578|chr14:58467891-58467891|A/-|frameshift_variant	REV__KIAA0586|p.K791Rfs*14|1|0.33|ENSG00000100578|chr14:58467891-58467891|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7584228515625	2	464.782359	927.550165	-0.47923	-0.00022274	-0.10704	-4.975E-05	-0.58627	-0.00027249	464.7822725992093	20.133	0.13856	20.133	20.051	20.189	0					7	3	3	0	0	0	0.54267	1	5577	5577		27.882	2.3082	1	280580	+		42973	13562;20782	28447	28563	43523	43523					0.08349180025709302
TGTIVPALKA	10	Unmodified	_TGTIVPALKA_					0	0	0			REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7998352050781	2	485.800217	969.585882	-1.2392	-0.000602	0.70441	0.0003422	-0.53478	-0.0002598	485.80059911681593	32.828	1.1634	32.828	32.438	33.602	0					143	46	5	0	0	0	0.46215	1	10863	10863		49.442	0	1	11550000	+		42974	14925	28448	28564	43524	43524					0.09987217482705546
TGTKFKIFS	9	Unmodified	_TGTKFKIFS_					0	0	0			REV__ZHX1|p.L775F|1|0.13|ENSG00000165156|chr8:123253624-123253624|G/A|missense_variant	REV__ZHX1|p.L775F|1|0.13|ENSG00000165156|chr8:123253624-123253624|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.52935791015625	3	343.530687	1027.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.382	1	19.382	18.882	19.882	0								0	0	0	0.34845	1	5980	5980		25.574	4.7369	1		+		42975	22308	28449	28565	43525	43525					0.057549309656678815
TGTKNVSSL	9	Unmodified	_TGTKNVSSL_					0	0	0			REV__nc|ENSG00000076356|O75051-2|PLXNA2	REV__nc|ENSG00000076356|O75051-2|PLXNA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.7474670410156	2	453.748182	905.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.32	1	14.32	13.82	14.82	0								0	0	0	0.28996	1	3085	3085		37.159	0	1		+		42976	13248	28450	28566	43526	43526					0.025288906552077606
TGTKQFQELEE	11	Unmodified	_TGTKQFQELEE_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	655.31591796875	2	655.317157	1308.61976	-0.8538	-0.00055951	-1.1209	-0.00073457	-1.9747	-0.0012941	655.3163256271109	14.483	0.11858	14.483	14.443	14.561	0					6	5	2	0	0	0	0.8105	1	3140	3140		12.812	1.9462	1	72708	+		42977	17240	28451	28567	43527	43527					-0.022204506068419505
TGTLGAVHK	9	Unmodified	_TGTLGAVHK_					0	0	0		nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	nc|ENSG00000099785|Q9P0N8-2|MARCHF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.2528991699219	2	442.253434	882.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.571	1	24.571	24.071	25.071	0								0	0	0	0.36266	1	7272	7272		21.96	0.25755	1				42978	1938	28452	28568	43528	43528					0.046369181002773985
TGTLGLIVM	9	Unmodified	_TGTLGLIVM_					0	0	0			REV__tr|U7T0W6|U7T0W6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00716PE=4SV=1	REV__tr|U7T0W6|U7T0W6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00716PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7618408203125	2	452.762246	903.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.373	1	40.373	39.873	40.873	0								0	0	0	0.34907	1	13519	13519		25.45	6.0902	1		+		42979	22068	28453	28569	43529	43529					0.0543249731092601
TGTNVLFVY	9	Unmodified	_TGTNVLFVY_					0	0	0			REV__RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant	REV__RB1CC1|p.F304Lfs*6|1|0.47|ENSG00000023287|chr8:52673935-52673935|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2693786621094	2	507.26875	1012.52295	0.86922	0.00044093	0.092748	4.7048E-05	0.96197	0.00048798	507.26900552182633	32.389	0.2114	32.389	32.303	32.514	0					12	5	3	0	0	0	0.30951	1	11897	11897		49.442	1.482	1	348640	+		42980	12945	28454	28570	43530	43530					0.017186516946594566
TGVAAQLK	8	Unmodified	_TGVAAQLK_					0	0	0			REV__ENSG00000142347|ENST00000644032|MYO1F	REV__ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.2375793457031	2	394.237253	786.459953	0.70343	0.00027732	-1.1582	-0.00045661	-0.45477	-0.00017929	394.2367771412438	19.102	0.14031	19.102	19.015	19.155	0					8	3	3	0	0	0	0.32815	1	5695	5695		79.451	2.6769	1	616400	+		42981	15148	28455	28571	43531	43531					0.05818130697264223
TGVCGPLA	8	Unmodified	_TGVCGPLA_					0	0	0			REV__ENST00000433031.1_1_7:57216973-57217525:-|nuORF	REV__ENST00000433031.1_1_7:57216973-57217525:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.1828308105469	2	359.183632	716.352711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.228	1	47.228	46.728	47.728	0								0	0	0	1.7419	1	17356	17356		37.028	0	1		+		42982	19182	28456	28572	43532	43532					-0.01681162508612033
TGVKELAQR	9	Unmodified	_TGVKELAQR_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.5295715332031	3	334.529458	1000.56654	0.53777	0.0001799	-0.38975	-0.00013038	0.14802	4.9517E-05	334.5294292392467	15.508	0.61214	15.508	15.4	16.013	0					30	12	5	0	0	0	0.18416	1	4240	4240		63.534	3.4156	1	11675000			42983	7514	28457	28573	43533	43533					0.06628261191792717
TGVLSPTAVI	10	Unmodified	_TGVLSPTAVI_					0	0	0		ENST00000496391.5_2_7:102065935-102066592:+|nuORF	ENST00000496391.5_2_7:102065935-102066592:+|nuORF	ENST00000496391.5_2_7:102065935-102066592:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.28472900390625	2	479.2844	956.554247	2.2812	0.0010934	-2.2988	-0.0011018	-0.017572	-8.422E-06	479.2834663895604	41.923	0.14063	41.923	41.84	41.981	0					8	4	2	0	0	0	0.54197	1	16702	16702		40.778	3.6191	1	64433			42984	10116	28458	28574	43534	43534					0.0742322472875685
TGVTIIHQY	9	Unmodified	_TGVTIIHQY_					0	0	0			REV__ENSG00000198354|ENST00000360028|DCAF12L2	REV__ENSG00000198354|ENST00000360028|DCAF12L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	344.52227783203125	3	344.522192	1030.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.922	1	32.922	32.422	33.422	0								0	0	0	0.39312	1	11501	11501		14.137	0	1		+		42985	17392	28459	28575	43535	43535					0.030694564432451443
TGVVEMIRKL	10	Unmodified	_TGVVEMIRKL_					0	0	0			REV__ENSG00000185386|ENST00000330651|MAPK11	REV__ENSG00000185386|ENST00000330651|MAPK11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	382.5616455078125	3	382.561881	1144.66381	0.0022817	8.7287E-07	-0.28154	-0.00010771	-0.27926	-0.00010683	382.56179213766023	25.262	0.16093	25.262	25.176	25.337	0					8	4	2	0	0	0	0.51121	1	7588	7588		65.465	22.601	1	159230	+		42986	17023	28460	28576	43536	43536					0.09726907076446878
TGWGYRKLR	9	Unmodified	_TGWGYRKLR_					0	0	0		nc|ENSG00000088926|P03951-2|F11;ENSG00000088926|ENST00000403665|F11	nc|ENSG00000088926|P03951-2|F11	nc|ENSG00000088926|P03951-2|F11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.5483093261719	3	379.548964	1135.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.18	1	23.18	22.68	23.68	0								0	0	0	0.38667	1	7638	7638		14.865	0	1				42987	1789	28461	28577	43537	43537					0.06267362556923217
TGWLVTMTH	9	Unmodified	_TGWLVTMTH_					0	0	0			REV__nc|ENSG00000203666|Q5VUJ9|EFCAB2	REV__nc|ENSG00000203666|Q5VUJ9|EFCAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.1762390136719	3	349.176027	1044.50625	0.51203	0.00017879	-0.46806	-0.00016344	0.043965	1.5352E-05	349.17594321087273	24.385	0.21556	24.385	24.278	24.494	0					9	4	3	0	0	0	0.56424	1	8545	8545		25.574	25.574	1	240580	+		42988	21189	28462	28578	43538	43538					-0.014221724629351229
TGYEQVGAEL	10	Unmodified	_TGYEQVGAEL_					0	0	0			REV__ENSG00000197520|ENST00000445590|FAM177B	REV__ENSG00000197520|ENST00000445590|FAM177B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.1720886230469	3	356.173228	1065.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.52	1	22.52	22.02	23.02	0								0	0	0	0.38322	1	7502	7502		32.751	11.065	1		+		42989	17340	28463	28579	43539	43539					-0.03227447898552782
THAEKLNGVM	10	Oxidation (M)	_THAEKLNGVM(Oxidation (M))_		THAEKLNGVM(1)		THAEKLNGVM(55)	0	0	1			REV__ENST00000300976.8_1_19:18782101-18782323:+|nuORF	REV__ENST00000300976.8_1_19:18782101-18782323:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.2786254882812	2	558.279323	1114.54409	0.53542	0.00029891	-1.2677	-0.00070773	-0.73228	-0.00040882	558.2786148929889	35.249	0.3909	35.249	35.104	35.495	0					18	10	2	0	0	0	0.41335	1	13216	13216		54.776	10.245	1	321160	+		42990	18201	28464	28580	43540	43540		682			-0.008597062681246825
THARKTIS	8	Unmodified	_THARKTIS_					0	0	0			REV__nc|ENSG00000164548|Q13595-2|TRA2A	REV__nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.26458740234375	2	457.264333	912.514114	0.72171	0.00033001	-0.30227	-0.00013822	0.41945	0.0001918	457.26407678316514	47.289	1.3985	47.289	47.041	48.439	0					133	83	2	0	0	0	0.77246	1	18282	18282		24.203	3.2558	1	252900	+		42991	15992	28465	28581	43541	43541					0.05435722848869773
THDTYNFDQ	9	Unmodified	_THDTYNFDQ_					0	0	0			REV__ENSG00000136928|ENST00000259455|GABBR2	REV__ENSG00000136928|ENST00000259455|GABBR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.7326049804688	2	570.73326	1139.45197	0.20491	0.00011695	-1.6223	-0.00092589	-1.4174	-0.00080894	570.7326807181626	22.797	0.36728	22.797	22.589	22.956	0					15	7	3	0	0	0	0.54267	1	7650	7650		27.882	1.1893	1	398410	+		42992	14891	28466	28582	43542	43542					-0.11218093080810831
THFFAELVQ	9	Unmodified	_THFFAELVQ_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2814331054688	2	546.279649	1090.54475	3.7822	0.0020662	-2.9945	-0.0016359	0.7877	0.00043031	546.2775553265037	27.579	0.56882	27.579	27.424	27.993	0					24	11	3	0	0	0	0.37197	1	9903	9903		44.117	2.6902	1	710730	+		42993	15972	28467	28583	43543	43543					0.003094564432331026
THFSKIPI	8	Unmodified	_THFSKIPI_					0	0	0		nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7712707519531	2	471.774003	941.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.757	1	33.757	33.257	34.257	0								0	0	0	1.7419	1	11881	11881		53.351	7.3995	1				42994	4212	28468	28584	43544	43544					0.0603467913977056
THGPDRSRR	9	Unmodified	_THGPDRSRR_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2858276367188	2	541.28412	1080.55369	2.0138	0.00109	0.80678	0.0004367	2.8206	0.0015267	541.2844640097969	17.157	0.70407	17.157	16.947	17.651	0					26	14	4	0	0	0	0.21419	1	5033	5033		52.937	52.937	1	3628600	+		42995	19228	28469	28585	43545	43545					0.01663242852282565
THGPKKSVRVE	11	Unmodified	_THGPKKSVRVE_					0	0	0			REV__GTPBP8|p.T206Nfs*10|1|0.36|ENSG00000163607|chr3:112996935-112996936|-/A|frameshift_variant	REV__GTPBP8|p.T206Nfs*10|1|0.36|ENSG00000163607|chr3:112996935-112996936|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.2380065917969	3	413.238566	1236.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.63	1	43.63	43.13	44.13	0								0	0	0	0.45674	1	14251	14251		17.833	1.8264	1		+		42996	15898	28470	28586	43546	43546					0.08498982065975724
THIGADNLP	9	Unmodified	_THIGADNLP_					0	0	0		MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant;MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant	MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant	MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2418212890625	2	469.240524	936.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.385	1	21.385	20.885	21.885	0								0	0	0	0.3368	1	6132	6132		27.882	3.6795	1				42997	5956	28471	28587	43547	43547					-0.004279761419979877
THKPHFMALH	10	Unmodified	_THKPHFMALH_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A;JAG1-INPP5A|1|fusion;INPP5A|p.N116Tfs*25|3|0.35|ENSG00000068383|chr10:132690427-132690427|A/-|frameshift_variant	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.8145751953125	2	609.813667	1217.61278	0.15775	9.6199E-05	2.3052	0.0014058	2.463	0.001502	609.8150008544708	15.545	0.13966	15.545	15.435	15.575	0					8	5	2	0	0	0	0.67464	1	3393	3393		26.693	9.2249	1	120360			42998	1421	28472	28588	43548	43548					0.012680028222575856
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2513732910156	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.726	1	44.726	44.226	45.226	0								0	0	0	1.7419	1	17920	17920		24.203	0	1		+		42999	15624	28473	28589	43549	43549					0.04839453677379879
THKYKAFPA	9	Unmodified	_THKYKAFPA_					0	0	0		PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant	PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7894287109375	2	531.790184	1061.56581	0.32124	0.00017083	-0.73703	-0.00039194	-0.41578	-0.00022111	531.7901357378779	15.17	0.069242	15.17	15.109	15.178	0					5	3	2	0	0	0	0.35045	1	3402	3402		45.952	13.997	1	91035			43000	7141	28474	28590	43550	43550					0.03749466542740265
THLDVSSLF	9	Unmodified	_THLDVSSLF_					0	0	0			REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	340.1778564453125	3	340.178313	1017.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.533	1	45.533	45.033	46.033	0								0	0	0	0.3693	1	14652	14652		19.997	1.4657	1		+		43001	14391	28475	28591	43551	43551					0.005054636892964481
THMSHLLR	8	Unmodified	_THMSHLLR_					0	0	0		ENST00000547904.1_1_12:108297286-108297550:-|nuORF	ENST00000547904.1_1_12:108297286-108297550:-|nuORF	ENST00000547904.1_1_12:108297286-108297550:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.76617431640625	2	497.766186	993.517819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.819	1	13.819	13.319	14.319	0								0	0	0	1.7419	1	2891	2891		30.504	2.2494	1				43002	10594	28476	28592	43552	43552					0.020800693510636847
THNSSLEYNI	10	Unmodified	_THNSSLEYNI_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.27978515625	2	589.277835	1176.54112	3.1849	0.0018768	0.58574	0.00034516	3.7707	0.002222	589.2780917799982	38.721	0.45376	38.721	38.61	39.064	0					27	9	5	0	0	0	0.38194	1	15237	15237		58.23	7.0372	1	1820000			43003	1881	28477	28593	43553	43553					-0.04009258121277526
THQKTHTIKK	10	Unmodified	_THQKTHTIKK_					0	0	0		ZNF175|p.R359I|1|0.15|ENSG00000105497|chr19:51587407-51587407|G/T|missense_variant	ZNF175|p.R359I|1|0.15|ENSG00000105497|chr19:51587407-51587407|G/T|missense_variant	ZNF175|p.R359I|1|0.15|ENSG00000105497|chr19:51587407-51587407|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.3560791015625	2	611.356754	1220.69895	-0.81529	-0.00049843	0.013187	8.0621E-06	-0.8021	-0.00049037	611.35669482975	53.852	0.85653	53.852	53.49	54.346	0					77	53	3	0	0	0	0.54197	1	18972	18972		40.778	14.085	1	155880			43004	23145	28478	28594	43554	43554					0.09743285928584555
THQPVAVL	8	Unmodified	_THQPVAVL_					0	0	0		ENSG00000131050|ENST00000354932|BPIFA2	ENSG00000131050|ENST00000354932|BPIFA2	ENSG00000131050|ENST00000354932|BPIFA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.750244140625	2	432.750527	863.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.202	1	20.202	19.702	20.702	0								0	0	0	1.7419	1	5368	5368		60.294	2.4827	1				43005	3695	28479	28595	43555	43555					0.049298195886080975
THRKGVPG	8	Unmodified	_THRKGVPG_					0	0	0			REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.24554443359375	2	426.245944	850.477334	-0.79628	-0.00033941	0.51961	0.00022148	-0.27666	-0.00011793	426.2460676157446	50.367	0.39984	50.367	50.245	50.645	0					59	25	3	0	0	0	0.78999	1	15663	15663		13.775	0	1	643210	+		43006	12399	28480	28596	43556	43556					0.04611471022963087
THTALPPIY	9	Unmodified	_THTALPPIY_					0	0	0			REV__ENST00000469535.5_1_1:207925470-207933074:+|nuORF	REV__ENST00000469535.5_1_1:207925470-207933074:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7764892578125	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.555	1	36.555	36.055	37.055	0								0	0	0	0.30835	1	13796	13796		33.516	0.70317	1		+		43007	14188	28481	28597	43557	43557					0.033623579315758434
THTIEHTR	8	Unmodified	_THTIEHTR_					0	0	0			REV__ZNF564|p.R469I|1|0.26|ENSG00000249709|chr19:12526702-12526702|C/A|missense_variant	REV__ZNF564|p.R469I|1|0.26|ENSG00000249709|chr19:12526702-12526702|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7566223144531	2	497.756872	993.499192	-0.026625	-1.3253E-05	0.047301	2.3544E-05	0.020676	1.0292E-05	497.7569958430951	18.419	0.11544	18.419	18.361	18.476	0					4	2	2	0	0	0	0.7126	1	5665	5665		31.955	0	1	83675	+		43008	22326	28482	28598	43558	43558					0.002182309808631544
THTQAASLPY	10	Unmodified	_THTQAASLPY_					0	0	0		nc|ENSG00000130347|Q8WWV3-2|RTN4IP1;ENSG00000130347|ENST00000369063|RTN4IP1;nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.7760009765625	2	544.772188	1087.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.543	1	45.543	45.043	46.043	0								0	0	0	0.32041	1	17608	17608		47.657	14.142	1				43009	3636	28483	28599	43559	43559					-0.0104403542475211
THTSDIIGK	9	Unmodified	_THTSDIIGK_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2	REV__nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2626037597656	2	486.261456	970.50836	-1.2407	-0.00060331	0.81942	0.00039845	-0.42129	-0.00020486	486.261870564765	16.459	0.35312	16.459	16.24	16.593	0					27	11	3	0	0	0	0.47038	1	3876	3876		35.618	5.1146	1	2146100	+		43010	15647	28484	28600	43560	43560					0.021925795465335796
THTVVKLK	8	Unmodified	_THTVVKLK_					0	0	0		ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant;ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ZMYM6|p.L686Ifs*41|1|0.03|ENSG00000163867|chr1:34992324-34992325|-/GAAAGGAAAAGAAAAT|frameshift_variant;ZMYM6|p.N724Mfs*15|1|0.42|ENSG00000163867|chr1:34988911-34988911|T/-|frameshift_variant;ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant;ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant;ENST00000472971.1_1_1:35476328-35477547:-|nuORF	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.294677734375	2	463.295102	924.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.892	1	33.892	33.392	34.392	0								0	0	0	1.7419	1	11402	11402		17.365	0.89182	1				43011	5614	28485	28601	43561	43561					0.11034654548132039
THYTLLFTH	9	Unmodified	_THYTLLFTH_					0	0	0		PIGZ|p.T490Lfs*10|1|0.26|ENSG00000119227|chr3:196947430-196947430|C/-|frameshift_variant;ENSG00000119227|ENST00000412723|PIGZ	PIGZ|p.T490Lfs*10|1|0.26|ENSG00000119227|chr3:196947430-196947430|C/-|frameshift_variant	PIGZ|p.T490Lfs*10|1|0.26|ENSG00000119227|chr3:196947430-196947430|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.7911987304688	2	566.792924	1131.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.135	1	17.135	16.635	17.635	0								0	0	0	0.38123	1	4029	4029		16.473	1.6083	1				43012	3102	28486	28602	43562	43562					0.010771453345796544
TIAAPPGRPR	10	Unmodified	_TIAAPPGRPR_					0	0	0			REV__ENST00000551050.6_2_12:42866355-42876857:-|nuORF	REV__ENST00000551050.6_2_12:42866355-42876857:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.3070068359375	2	518.306532	1034.59851	-1.4091	-0.00073035	2.2257	0.0011536	0.81663	0.00042327	518.3081676027053	17.331	0.081669	17.331	17.294	17.376	0					4	2	2	0	0	0	0.64178	1	4308	4308		29.15	3.6994	1	83959	+		43013	20199	28487	28603	43563	43563					0.08259673665611444
TIAPALVSK	9	Unmodified	_TIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2821044921875	2	450.28166	898.548768	0.54061	0.00024343	-0.23606	-0.00010629	0.30455	0.00013713	450.2815871734674	28.631	0.23487	28.631	28.545	28.78	0					24	10	3	0	0	0	0.39215	1	8937	8937		42.396	5.237	1	324700			43014	1530	28488	28604	43564	43564					0.09543545936958253
TIAPALVSK	9	Unmodified	_TIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.2818298339844	2	450.28166	898.548768	0.17864	8.0437E-05	-0.72196	-0.00032508	-0.54332	-0.00024465	450.28127895244944	28.948	0.41632	28.948	28.818	29.234	0					24	10	4	0	0	0	0.11898	1	10257	10257		75.043	30.927	1	1794700			43015	1530	28488	28604	43565	43565					0.09543545936958253
TIAPALVSK	9	Unmodified	_TIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2814636230469	2	450.28166	898.548768	-0.10115	-4.5547E-05	-0.7354	-0.00033114	-0.83655	-0.00037668	450.28136394198106	28.936	0.76133	28.936	28.728	29.49	0					46	16	4	0	0	0	0.10506	1	10621	10621		78.264	30.606	1	20107000			43016	1530	28488	28604	43566	43566					0.09543545936958253
TIAPALVSK	9	Unmodified	_TIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2813415527344	2	450.28166	898.548768	-0.40163	-0.00018084	-0.68915	-0.00031031	-1.0908	-0.00049115	450.2816618290237	28.867	0.61631	28.867	28.707	29.324	0					28	12	4	0	0	0	0.22837	1	10475	10475		58.23	15.834	1	3009900			43017	1530	28488	28604	43567	43567					0.09543545936958253
TIASIILS	8	Unmodified	_TIASIILS_					0	0	0		tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	409.2551574707031	2	409.255111	816.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.785	1	47.785	47.285	48.285	0								0	0	0	1.7419	1	15115	15115		42.474	0	1				43018	22840	28489	28605	43568	43568					0.08008168154276518
TIASIILS	8	Unmodified	_TIASIILS_					0	0	0		tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	409.2548522949219	2	409.255111	816.49567	0.052762	2.1593E-05	0.35765	0.00014637	0.41041	0.00016796	409.2551752011269	47.998	0.26723	47.998	47.923	48.19	0					31	16	3	0	0	0	0.29152	1	18235	18235		85.359	8.5128	1	214120			43019	22840	28489	28605	43569	43569					0.08008168154276518
TIATVLIS	8	Unmodified	_TIATVLIS_					0	0	0		ENSG00000196098|ENST00000354924|OR5K4	ENSG00000196098|ENST00000354924|OR5K4	ENSG00000196098|ENST00000354924|OR5K4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.2552185058594	2	409.255111	816.49567	0.12334	5.0476E-05	0.31271	0.00012798	0.43605	0.00017845	409.2552024042064	47.769	0.14965	47.769	47.68	47.83	0					13	9	2	0	0	0	0.29152	1	15946	15946		85.359	0	1	63498			43020	7322	28490	28606	43570	43570					0.08008168154299256
TICGAMSSIKK	11	Carbamidomethyl (C)	_TIC(Carbamidomethyl (C))GAMSSIKK_	TIC(1)GAMSSIKK		TIC(78)GAMSSIKK		0	1	0		CCNB3|p.T485Hfs*37|1|0.28|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant;ENSG00000147082|ENST00000376042|CCNB3	CCNB3|p.T485Hfs*37|1|0.28|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant	CCNB3|p.T485Hfs*37|1|0.28|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	598.31201171875	2	598.312309	1194.61006	0.13758	8.2314E-05	-0.62825	-0.00037589	-0.49068	-0.00029358	598.3118835850165	21.629	0.14396	21.629	21.539	21.683	0					10	4	3	0	0	0	0.16685	1	5983	5983		78.264	8.6362	1	364140			43021	416	28491	28607	43571	43571	16				0.020543665824106938
TIDERAINKK	10	Unmodified	_TIDERAINKK_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;ENSG00000120756|ENST00000457734|PLS1	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.56298828125	3	396.562938	1186.66699	0.91162	0.00036151	-0.83741	-0.00033209	0.074206	2.9427E-05	396.5626189749276	17.565	0.17025	17.565	17.46	17.63	0					10	4	3	0	0	0	0.60281	1	5002	5002		33.922	3.3528	1	788680			43022	2149	28492	28608	43572	43572					0.08111873454799934
TIDKDNGNKI	10	Unmodified	_TIDKDNGNKI_					0	0	0			REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.29638671875	2	559.296027	1116.5775	0.51671	0.000289	-0.25047	-0.00014009	0.26624	0.00014891	559.295873054491	22.069	0.13509	22.069	21.984	22.119	0					8	3	3	0	0	0	0.44601	1	7121	7121		51.193	1.6567	1	365610	+		43023	14260	28493	28609	43573	43573					0.023876187754240163
TIDPATPW	8	Unmodified	_TIDPATPW_					0	0	0			REV__ENST00000576972.5_1_16:67914666-67915321:+|nuORF	REV__ENST00000576972.5_1_16:67914666-67915321:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7272644042969	2	450.726718	899.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.158	1	13.158	12.658	13.658	0								0	0	0	1.7419	1	3136	3136		26.796	1.3459	1		+		43024	12989	28494	28610	43574	43574					-0.01485879402230239
TIDTYLLHSQ	10	Unmodified	_TIDTYLLHSQ_					0	0	0		ENSG00000151746|ENST00000652176|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1	ENSG00000151746|ENST00000652176|BICD1	ENSG00000151746|ENST00000652176|BICD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	397.54022216796875	3	397.539911	1189.5979	0.37243	0.00014806	0.38873	0.00015454	0.76116	0.00030259	397.5400811219538	17.472	0.37089	17.472	17.363	17.734	0					17	7	3	0	0	0	0.46215	1	5060	5060		61.691	61.691	1	800750			43025	4984	28495	28611	43575	43575					0.010687894352258809
TIESMKRGL	9	Unmodified	_TIESMKRGL_					0	0	0			REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7854614257812	2	517.786784	1033.55902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.565	1	43.565	43.065	44.065	0								0	0	0	0.36266	1	17028	17028		21.96	15.647	1		+		43026	22295	28496	28612	43576	43576					0.04357785599881936
TIFDKALNQ	9	Unmodified	_TIFDKALNQ_					0	0	0			REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.5245666503906	3	350.525713	1048.55531	0.70014	0.00024542	-4.3317	-0.0015184	-3.6315	-0.0012729	350.524368028588	20.201	0.33814	20.201	19.92	20.258	0					15	7	4	0	0	0	0.44593	1	6241	6241		37.812	2.6333	1	1372700	+		43027	22058	28497	28613	43577	43577					0.032974390976505674
TIFGKAHSL	9	Unmodified	_TIFGKAHSL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2767639160156	2	487.276909	972.539266	-0.33448	-0.00016299	0.46125	0.00022475	0.12676	6.1769E-05	487.27718605608413	28.287	0.29147	28.287	28.195	28.486	0					14	7	2	0	0	0	0.037712	1	9985	9985		65.465	0	1	1342500			43028	2629	28498	28614	43578	43578					0.0518977765142381
TIFGKIIRK	9	Unmodified	_TIFGKIIRK_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.3529663085938	2	538.352951	1074.69135	-0.011835	-6.3716E-06	0.32723	0.00017617	0.3154	0.0001698	538.3530051511227	27.771	0.32308	27.771	27.664	27.987	0					17	11	2	0	0	0	0.38666	1	8887	8887		27.882	0	1	50341			43029	6171	28499	28615	43579	43579					0.15699178398972435
TIFGKIIRK	9	Unmodified	_TIFGKIIRK_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3533935546875	2	538.352951	1074.69135	0.29874	0.00016083	0.43677	0.00023514	0.73551	0.00039597	538.3531828932564	27.94	0.98052	27.94	27.781	28.762	0					45	20	4	0	0	0	0.026848	1	10165	10165		95.815	58.004	1	831130			43030	6171	28499	28615	43580	43580					0.15699178398972435
TIFGKIIRK	9	Unmodified	_TIFGKIIRK_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2377014160156	3	359.237726	1074.69135	-0.064015	-2.2997E-05	-0.060523	-2.1742E-05	-0.12454	-4.4739E-05	359.23771163202804	27.826	0.7655	27.826	27.712	28.478	0					43	15	4	0	0	0	0.46194	1	10011	10011		36.447	2.2742	1	1143400			43031	6171	28499	28615	43581	43581					0.15699178398972435
TIFSALENDPL	11	Unmodified	_TIFSALENDPL_					0	0	0		nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	nc|ENSG00000087008|O15254-2|ACOX3	nc|ENSG00000087008|O15254-2|ACOX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.21173095703125	3	407.211683	1218.61322	-2.2857	-0.00093078	3.2299	0.0013153	0.94419	0.00038448	407.21290295674606	25.168	0.18185	25.168	25.114	25.296	0					8	4	2	0	0	0	0.75314	1	7971	7971		22.562	10.629	1	124300			43032	1755	28500	28616	43582	43582					0.012656562324309562
TIGEKGLGLH	10	Unmodified	_TIGEKGLGLH_					0	0	0			REV__nc|ENSG00000254986|Q9NY33-4|DPP3	REV__nc|ENSG00000254986|Q9NY33-4|DPP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.793212890625	2	512.792924	1023.57129	-0.28614	-0.00014673	1.3096	0.00067153	1.0234	0.0005248	512.7936020616179	25.277	0.3499	25.277	25.057	25.407	0					15	11	2	0	0	0	0.61187	1	7841	7841		32.812	1.2826	1	88902	+		43033	17750	28501	28617	43583	43583					0.0604514533456495
TIGSQVATL	9	Unmodified	_TIGSQVATL_					0	0	0		nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-6|PDLIM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.25341796875	2	445.2531	888.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.255	1	25.255	24.755	25.755	0								0	0	0	0.21054	1	8002	8002		49.442	1.7842	1				43034	11613	28502	28618	43584	43584					0.04294078660575451
TIGTILIS	8	Unmodified	_TIGTILIS_					0	0	0		OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant;ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6	OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant	OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.2549133300781	2	409.255111	816.49567	1.6197	0.00066287	-1.4681	-0.00060084	0.15156	6.2028E-05	409.2543519109932	47.717	0.069393	47.717	47.677	47.746	0					7	4	2	0	0	0	0.29152	1	14580	14580		85.359	16.875	1	41523			43035	7889	28503	28619	43585	43585					0.08008168154299256
TIGTILIS	8	Unmodified	_TIGTILIS_					0	0	0		OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant;ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6	OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant	OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.2553405761719	2	409.255111	816.49567	0.63181	0.00025857	-0.15527	-6.3546E-05	0.47653	0.00019502	409.2549851088993	48.047	0.24503	48.047	47.941	48.186	0					24	15	3	0	0	0	0.26922	1	17522	17522		143.02	9.5503	1	91361			43036	7889	28503	28619	43586	43586					0.08008168154299256
TIGVPRPTI	9	Unmodified	_TIGVPRPTI_					0	0	0			REV__ENSG00000215277|ENST00000430154|RNF212B	REV__ENSG00000215277|ENST00000430154|RNF212B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.2957763671875	2	477.292559	952.570566	3.4955	0.0016684	3.986	0.0019025	7.4815	0.0035708	477.29429959285625	30.321	0.15107	30.321	30.252	30.404	0					8	4	2	0	0	0	0.39215	1	9960	9960		42.396	0	1	57755	+		43037	17597	28504	28620	43587	43587					0.09238350685518526
TIHVQGVI	8	Unmodified	_TIHVQGVI_					0	0	0		ENST00000472813.1_1_10:35464831-35468254:+|nuORF;ENST00000374711.5_1_10:35464603-35477327:+|nuORF;nc|ENSG00000095794|Q03060-21|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-6|CREM;nc|ENSG00000095794|Q03060-1|CREM	ENST00000472813.1_1_10:35464831-35468254:+|nuORF	ENST00000472813.1_1_10:35464831-35468254:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	433.7583312988281	2	433.758352	865.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.533	1	28.533	28.033	29.033	0								0	0	0	1.7419	1	9483	9483		57.811	0	1				43038	9017	28505	28621	43588	43588					0.06402106105667826
TIIDKSKAV	9	Unmodified	_TIIDKSKAV_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2;HMGCS2|p.I277Sfs*22|1|0.26|ENSG00000134240|chr1:119759139-119759139|T/-|frameshift_variant	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7981262207031	2	487.797675	973.580796	-0.065942	-3.2166E-05	1.2097	0.00059009	1.1438	0.00055793	487.79833572984893	22.13	0.13557	22.13	22.062	22.198	0					7	4	2	0	0	0	0.04067	1	6218	6218		98.582	34.375	1	119910			43039	3898	28506	28622	43589	43589					0.09294913620090028
TIIDKSKAV	9	Unmodified	_TIIDKSKAV_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2;HMGCS2|p.I277Sfs*22|1|0.26|ENSG00000134240|chr1:119759139-119759139|T/-|frameshift_variant	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7975158691406	2	487.797675	973.580796	0.80292	0.00039166	-1.1604	-0.00056603	-0.35746	-0.00017437	487.7970452441236	22.329	0.16809	22.329	22.27	22.438	0					8	3	3	0	0	0	0.032383	1	7424	7424		106.68	13.54	1	762860			43040	3898	28506	28622	43590	43590					0.09294913620090028
TIIDTKGVTAL	11	Unmodified	_TIIDTKGVTAL_					0	0	0		ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.3361206054688	2	566.334621	1130.65469	1.7692	0.0010019	-0.78107	-0.00044235	0.9881	0.0005596	566.3342824208324	40.291	0.13979	40.291	40.201	40.341	0					11	6	2	0	0	0	0.39748	1	15346	15346		50.034	4.0613	1	94130			43041	4141	28507	28623	43591	43591					0.0945883699175738
TIIDTKGVTAL	11	Unmodified	_TIIDTKGVTAL_					0	0	0		ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.3345336914062	2	566.334621	1130.65469	1.9241	0.0010897	-0.92496	-0.00052384	0.99913	0.00056584	566.333879912721	40.232	0.25716	40.232	40.168	40.425	0					19	10	3	0	0	0	0.11546	1	15843	15843		77.533	1.3636	1	276670			43042	4141	28507	28623	43592	43592					0.0945883699175738
TIIDTKGVTAL	11	Unmodified	_TIIDTKGVTAL_					0	0	0		ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.335205078125	2	566.334621	1130.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.071	1	40.071	39.571	40.571	0								0	0	0	0.37918	1	14250	14250		46.457	5.6786	1				43043	4141	28507	28623	43593	43593					0.0945883699175738
TIIMVPTSK	9	Unmodified	_TIIMVPTSK_					0	0	0			REV__ENSG00000133216|ENST00000374630|EPHB2	REV__ENSG00000133216|ENST00000374630|EPHB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2872314453125	2	495.288628	988.562703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.731	1	14.731	14.231	15.231	0								0	0	0	0.26578	1	3730	3730		34.173	0	1		+		43044	14700	28508	28624	43594	43594					0.06796455373751087
TIKEGSQLK	9	Unmodified	_TIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2928466796875	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.643	1	21.643	21.143	22.143	0								0	0	0	0.010204	1	6909	6909		93.143	7.9824	1				43045	1976	28509	28625	43595	43595					0.06977725614729025
TIKLVFRSDVV	11	Unmodified	_TIKLVFRSDVV_					0	0	0			REV__nc|ENSG00000159899|P20594-2|NPR2	REV__nc|ENSG00000159899|P20594-2|NPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	426.2600402832031	3	426.258967	1275.75507	2.4378	0.0010391	0.068315	2.912E-05	2.5061	0.0010683	426.25889302101615	21.017	0.21735	21.017	20.909	21.126	0					9	4	3	0	0	0	0.75314	1	6786	6786		22.562	0	1	486870	+		43046	21088	28510	28626	43596	43596					0.12822494045394706
TILATRSKQ	9	Unmodified	_TILATRSKQ_					0	0	0			REV__PANK1|p.K400Sfs*23|1|0.36|ENSG00000152782|chr10:89599363-89599363|T/-|frameshift_variant	REV__PANK1|p.K400Sfs*23|1|0.36|ENSG00000152782|chr10:89599363-89599363|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.3082275390625	2	509.306198	1016.59784	3.0128	0.0015344	0.91023	0.00046358	3.923	0.001998	509.30665090389726	34.802	0.31313	34.802	34.651	34.964	0					20	6	4	0	0	0	0.35021	1	13365	13365		45.972	0	1	807290	+		43047	21335	28511	28627	43597	43597					0.09020834225896124
TILEKFKEK	9	Unmodified	_TILEKFKEK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	568.3403930664062	2	568.339707	1134.66486	1.163	0.00066097	0.1712	9.7301E-05	1.3342	0.00075827	568.3397300819794	25.232	0.21933	25.232	25.143	25.362	0					10	6	2	0	0	0	0.01942	1	7572	7572		129.42	27.821	1	95907			43048	6541	28512	28628	43598	43598					0.10291444716995102
TILEKFKEK	9	Unmodified	_TILEKFKEK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.3399047851562	2	568.339707	1134.66486	0.1444	8.2067E-05	0.52506	0.00029841	0.66946	0.00038048	568.3400849636547	25.515	0.33994	25.515	25.404	25.744	0					14	8	2	0	0	0	0.00054273	1	8723	8723		159.28	51.188	1	658780			43049	6541	28512	28628	43599	43599					0.10291444716995102
TILEKFKEK	9	Unmodified	_TILEKFKEK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.34033203125	2	568.339707	1134.66486	0.23956	0.00013615	1.2169	0.00069161	1.4565	0.00082776	568.3401386248285	25.484	0.36227	25.484	25.375	25.738	0					12	7	3	0	0	0	0.0040239	1	9060	9060		159.28	51.188	1	587520			43050	6541	28512	28628	43600	43600					0.10291444716995102
TILLLPVLILI	11	Unmodified	_TILLLPVLILI_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.9359741210938	2	610.933243	1219.85193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.136	1	21.136	20.636	21.636	0								0	0	0	0.45674	1	6671	6671		6.3127	3.1534	1				43051	5373	28513	28629	43601	43601					0.250800882725116
TILNLHAL	8	Unmodified	_TILNLHAL_					0	0	0		ENST00000337451.7_1_15:23027862-23033379:-|nuORF	ENST00000337451.7_1_15:23027862-23033379:-|nuORF	ENST00000337451.7_1_15:23027862-23033379:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.77374267578125	2	447.774003	893.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.08	1	39.08	38.58	39.58	0								0	0	0	1.7419	1	14867	14867		26.796	0	1				43052	8705	28514	28630	43602	43602					0.08242679139755182
TILNNDLN	8	Unmodified	_TILNNDLN_					0	0	0			REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7403259277344	2	458.740357	915.46616	0.088692	4.0687E-05	-0.99286	-0.00045547	-0.90417	-0.00041478	458.739768493775	27.763	0.25915	27.763	27.616	27.875	0					11	6	2	0	0	0	0.68432	1	9130	9130		35.618	0	1	124590	+		43053	22131	28515	28631	43603	43603					0.00504604138131981
TIMEMASIMS	10	Unmodified	_TIMEMASIMS_					0	0	0			REV__ENST00000429345.5_1_6:6569668-6622924:-|nuORF	REV__ENST00000429345.5_1_6:6569668-6622924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.253173828125	2	557.253071	1112.49159	0.57705	0.00032156	-1.0426	-0.00058101	-0.46559	-0.00025945	557.2523672981956	19.863	0.46403	19.863	19.43	19.894	0					19	9	3	0	0	0	0.65213	1	6255	6255		27.882	0	1	296710	+		43054	19147	28516	28632	43604	43604					-0.06015748717618408
TIMKMRSP	8	Unmodified	_TIMKMRSP_					0	0	0		ENSG00000172362|ENST00000641921|OR5B12	ENSG00000172362|ENST00000641921|OR5B12	ENSG00000172362|ENST00000641921|OR5B12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.26129150390625	2	482.259348	962.504143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.79	1	47.79	47.29	48.29	0								0	0	0	1.7419	1	19047	19047		40.778	0	1				43055	6360	28517	28633	43605	43605					0.02139075527611567
TIMPKDIQLAR	11	Unmodified	_TIMPKDIQLAR_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	643.3685302734375	2	643.368472	1284.72239	-1.2196	-0.00078468	0.87929	0.00056571	-0.34035	-0.00021897	643.3690896344209	33.744	0.27329	33.744	33.58	33.854	0					11	7	3	0	0	0	0.57554	1	12483	12483		38.714	17.028	1	199660			43056	6067;9271	28518	28634	43606	43606					0.09141963650904472
TIMPKDIQLAR	11	Unmodified	_TIMPKDIQLAR_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2481384277344	3	429.248074	1284.72239	0.95299	0.00040907	-1.2714	-0.00054572	-0.31836	-0.00013666	429.2475793052695	33.759	0.40337	33.759	33.561	33.964	0					28	10	4	0	0	0	0.65797	1	12904	12904		63.694	34.143	1	1761200			43057	6067;9271	28518	28634	43607	43607					0.09141963650904472
TIMPKDIQLAR	11	Unmodified	_TIMPKDIQLAR_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	643.3687744140625	2	643.368472	1284.72239	-0.1053	-6.7749E-05	0.25397	0.00016339	0.14866	9.5645E-05	643.3687563397592	33.686	0.15785	33.686	33.6	33.757	0					5	3	2	0	0	0	0.40021	1	12856	12856		51.528	23.646	1	84235			43058	6067;9271	28518	28634	43608	43608					0.09141963650904472
TIMPKDIQLAR	11	Unmodified	_TIMPKDIQLAR_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000197409|ENST00000356476|H3C4;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000274750|ENST00000614911|H3C6;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	643.3687744140625	2	643.368472	1284.72239	-0.97676	-0.00062841	0.87744	0.00056452	-0.099312	-6.3894E-05	643.3692008790113	33.692	0.16666	33.692	33.533	33.7	0					12	3	4	0	0	0	0.019657	1	12820	12820		120.27	73.816	1	1116300			43059	6067;9271	28518	28634	43609	43609					0.09141963650904472
TIMSGSKAK	9	Unmodified	_TIMSGSKAK_					0	0	0		nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-4|PRC1	nc|ENSG00000198901|O43663-4|PRC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7547607421875	2	461.754953	921.495352	-0.44534	-0.00020564	-0.43059	-0.00019883	-0.87593	-0.00040446	461.75485335431136	14.98	0.15207	14.98	14.918	15.07	0					11	6	3	0	0	0	0.30257	1	3168	3168		50.034	2.3762	1	362620			43060	7637	28519	28635	43610	43610					0.031464251627767226
TIMTVTTR	8	Unmodified	_TIMTVTTR_					0	0	0			REV__ENSG00000086548|ENST00000199764|CEACAM6	REV__ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.75457763671875	2	461.754953	921.495352	-1.1442	-0.00052834	0.67668	0.00031246	-0.46753	-0.00021588	461.7553463763075	15.012	0.13256	15.012	14.939	15.072	0					15	6	3	0	0	0	0.51384	1	3345	3345		58.782	2.0609	1	485920	+		43061	13365	28520	28636	43611	43611					0.031464251627767226
TIMTVTTR	8	Unmodified	_TIMTVTTR_					0	0	0			REV__ENSG00000086548|ENST00000199764|CEACAM6	REV__ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7547302246094	2	461.754953	921.495352	-0.90604	-0.00041837	0.25684	0.0001186	-0.6492	-0.00029977	461.75514301970935	15.268	0.25274	15.268	15.164	15.417	0					11	5	3	0	0	0	0.46905	1	4131	4131		63.306	8.53	1	2519000	+		43062	13365	28520	28636	43612	43612					0.031464251627767226
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.7351989746094	2	477.735606	953.456658	-0.085838	-4.1008E-05	-2.0737	-0.00099067	-2.1595	-0.0010317	477.73519484498837	20.488	0.13216	20.488	20.425	20.558	0					6	4	2	0	0	0	0.21263	1	5481	5481		60.118	6.7668	1	178980			43063	3273	28521	28637	43613	43613					-0.021931641473884156
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.7349548339844	2	477.735606	953.456658	-1.4756	-0.00070493	0.63308	0.00030245	-0.84248	-0.00040248	477.73580578659414	20.503	0.12463	20.503	20.438	20.563	0					9	4	3	0	0	0	0.27249	1	5741	5741		52.937	12.364	1	121040			43064	3273	28521	28637	43614	43614					-0.021931641473884156
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.5578918457031	3	413.558187	1237.65273	0.60558	0.00025044	-0.32841	-0.00013581	0.27718	0.00011463	413.5580031383103	14.987	0.093336	14.987	14.924	15.018	0					6	3	2	0	0	0	0.24586	1	3174	3174		68.786	26.448	1	104600			43065	3273	28522	28638	43615	43615					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	619.8330078125	2	619.833643	1237.65273	0.17563	0.00010886	-0.44108	-0.00027339	-0.26545	-0.00016454	619.8332506315157	14.98	0.093728	14.98	14.918	15.012	0					6	3	2	0	0	0	0.00089781	1	3171	3171		118.23	54.699	1	186550			43066	3273	28522	28638	43616	43616					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.55816650390625	3	413.558187	1237.65273	1.0278	0.00042507	-1.1056	-0.00045724	-0.077775	-3.2164E-05	413.55774629127507	15.244	0.30219	15.244	15.201	15.503	0					11	7	3	0	0	0	0.46278	1	3905	3905		46.955	7.0818	1	1589400			43067	3273	28522	28638	43617	43617					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	619.8339233398438	2	619.833643	1237.65273	0.016603	1.0291E-05	0.054862	3.4005E-05	0.071464	4.4296E-05	619.8337998380131	15.238	0.17928	15.238	15.19	15.369	0					12	4	4	0	0	0	0.03035	1	3898	3898		97.597	64.784	1	1292600			43068	3273	28522	28638	43618	43618					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	619.8344116210938	2	619.833643	1237.65273	0.65755	0.00040757	-0.28178	-0.00017466	0.37577	0.00023292	619.8335959749743	15.005	0.068151	15.005	14.965	15.033	0					6	3	2	0	0	0	0.29847	1	3346	3346		53.597	13.024	1	134530			43069	3273	28522	28638	43619	43619					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.5580139160156	3	413.558187	1237.65273	0.061332	2.5364E-05	-0.18935	-7.8306E-05	-0.12802	-5.2942E-05	413.5580512089765	15.209	0.20895	15.209	15.147	15.356	0					8	4	3	0	0	0	0.36165	1	4122	4122		55.721	31.489	1	227180			43070	3273	28522	28638	43620	43620					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	619.8336791992188	2	619.833643	1237.65273	0.19258	0.00011937	-0.18034	-0.00011178	0.012244	7.5891E-06	619.8335865207539	15.221	0.15849	15.221	15.164	15.322	0					7	3	3	0	0	0	6.1398E-05	1	4127	4127		139.15	79.035	1	829050			43071	3273	28522	28638	43621	43621					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.55780029296875	3	413.558187	1237.65273	-0.07165	-2.9631E-05	0.11548	4.7757E-05	0.043828	1.8125E-05	413.5582417077094	15.077	0.087745	15.077	15.012	15.1	0					5	3	2	0	0	0	0.33569	1	3307	3307		58.63	17.55	1	99182			43072	3273	28522	28638	43622	43622					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	619.8345947265625	2	619.833643	1237.65273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.083	1	15.083	14.583	15.583	0								0	0	0	0.048015	1	3314	3314		79.07	47.54	1				43073	3273	28522	28638	43623	43623					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.5582275390625	3	413.558187	1237.65273	-0.40493	-0.00016746	0.317	0.0001311	-0.087929	-3.6364E-05	413.558285858609	15.197	0.31649	15.197	15.113	15.429	0					13	6	4	0	0	0	0.18934	1	3951	3951		75.566	33.323	1	597850			43074	3273	28522	28638	43624	43624					0.04341221026493258
TINGMLPSTE	10	Unmodified	_TINGMLPSTE_					0	0	0		ENSG00000205693|ENST00000381273|MANSC4	ENSG00000205693|ENST00000381273|MANSC4	ENSG00000205693|ENST00000381273|MANSC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.7622680664062	2	531.760432	1061.50631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.031	1	21.031	20.531	21.531	0								0	0	0	0.38797	1	6910	6910		34.173	3.6689	1				43075	7756	28523	28639	43625	43625					-0.02198217253612711
TINRKMIEM	9	Oxidation (M)	_TINRKMIEM(Oxidation (M))_		TINRKMIEM(1)		TINRKM(-54)IEM(54)	0	0	1			REV__PRKAR2B|p.A397T|2|0.35|ENSG00000005249|chr7:107159514-107159514|G/A|missense_variant	REV__PRKAR2B|p.A397T|2|0.35|ENSG00000005249|chr7:107159514-107159514|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.3004760742188	2	576.299201	1150.58385	3.2994	0.0019014	-0.45171	-0.00026032	2.8476	0.0016411	576.2987157547352	21.713	0.26803	21.713	21.603	21.871	0					18	5	5	0	0	0	0.087861	1	7098	7098		82.241	15.279	2	3004700	+		43076	21413	28524	28640	43626	43626		770			0.014580974109321687
TINVEKDYI	9	Unmodified	_TINVEKDYI_					0	0	0		tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.7905883789062	2	547.790047	1093.56554	-1.5053	-0.00082461	2.5216	0.0013813	1.0163	0.00055671	547.7913782925074	28.659	0.28656	28.659	28.55	28.836	0					11	7	2	0	0	0	0.35021	1	9538	9538		45.972	0.020292	1	115270			43077	22930	28525	28641	43627	43627					0.022500020322468117
TINYHPSY	8	Unmodified	_TINYHPSY_					0	0	0			REV__HDAC11|p.R23H|1|0.1|ENSG00000163517|chr3:13481311-13481311|G/A|missense_variant	REV__HDAC11|p.R23H|1|0.1|ENSG00000163517|chr3:13481311-13481311|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2377014160156	2	497.735074	993.455596	-0.025663	-1.2773E-05	2.3987	0.0011939	2.373	0.0011811	497.73656894069813	38.164	0.38686	38.164	37.99	38.377	0					26	13	3	0	0	0	0.69548	1	15011	15011		34.173	2.2177	1	108560	+		43078	20718	28526	28642	43628	43628					-0.04139378516288161
TIPEQIQSL	9	Unmodified	_TIPEQIQSL_					0	0	0		ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000198648|ENST00000355999|STK39	ENST00000487143.5_1_2:168812008-168969496:-|nuORF	ENST00000487143.5_1_2:168812008-168969496:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.7838745117188	2	514.784764	1027.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.598	1	44.598	44.098	45.098	0								0	0	0	0.16453	1	17869	17869		56.434	0	1				43079	7582	28527	28643	43629	43629					0.04230019377814642
TIPHTSFI	8	Unmodified	_TIPHTSFI_					0	0	0			REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2501525878906	2	458.25036	914.486168	-0.64469	-0.00029543	0.29207	0.00013384	-0.35262	-0.00016159	458.25048389710565	35.563	0.38338	35.563	35.406	35.79	0					29	10	4	0	0	0	0.59411	1	13317	13317		50.025	0	1	1807100	+		43080	18070	28528	28644	43630	43630					0.025503998687554486
TIPHTSFI	8	Unmodified	_TIPHTSFI_					0	0	0			REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.250244140625	2	458.25036	914.486168	-1.1269	-0.00051642	1.2538	0.00057453	0.12681	5.8112E-05	458.25091334104684	35.284	0.22358	35.284	35.228	35.452	0					17	10	2	0	0	0	0.57802	1	11935	11935		52.299	0	1	154360	+		43081	18070	28528	28644	43631	43631					0.025503998687554486
TIPLYVVKQ	9	Unmodified	_TIPLYVVKQ_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.8275146484375	2	530.823692	1059.63283	3.4321	0.0018218	1.5337	0.00081414	4.9658	0.002636	530.8249217837933	14.186	0.17029	14.186	14.12	14.29	0					5	3	2	0	0	0	0.13519	1	3479	3479		71.296	0	1	2441500			43082	5672	28529	28645	43632	43632					0.10540077033851958
TIPYPIFIW	9	Unmodified	_TIPYPIFIW_					0	0	0		SLC19A3|p.S26Lfs*19|1|0.25|ENSG00000135917|chr2:227702244-227702245|-/A|frameshift_variant	SLC19A3|p.S26Lfs*19|1|0.25|ENSG00000135917|chr2:227702244-227702245|-/A|frameshift_variant	SLC19A3|p.S26Lfs*19|1|0.25|ENSG00000135917|chr2:227702244-227702245|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	383.8824157714844	3	383.882949	1148.62702	-0.0046823	-1.7975E-06	-0.76865	-0.00029507	-0.77333	-0.00029687	383.882595699745	24.651	0.83197	24.651	24.53	25.362	0					36	24	2	0	0	0	0.56424	1	7297	7297		25.574	3.8883	1	283330			43083	22403	28530	28646	43633	43633					0.058649785221632555
TIQGGSFESPK	11	Unmodified	_TIQGGSFESPK_					0	0	0		OSBPL3|p.A257T|1|0.19|ENSG00000070882|chr7:24863504-24863504|C/T|missense_variant	OSBPL3|p.A257T|1|0.19|ENSG00000070882|chr7:24863504-24863504|C/T|missense_variant	OSBPL3|p.A257T|1|0.19|ENSG00000070882|chr7:24863504-24863504|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.7891845703125	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.364	1	21.364	20.864	21.864	0								0	0	0	0.42918	1	6121	6121		30.569	4.9948	1				43084	11887	28531	28647	43634	43634					-0.002197835988681618
TIQPFLAPL	9	Unmodified	_TIQPFLAPL_					0	0	0			REV__ENST00000259318.7_1_9:112898482-112898686:+|nuORF	REV__ENST00000259318.7_1_9:112898482-112898686:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.2944641113281	2	500.29731	998.580068	-2.1406	-0.0010709	-3.7807	-0.0018915	-5.9214	-0.0029624	500.29586084499533	35.541	0.21089	35.541	35.459	35.669	0					15	8	2	0	0	0	0.18605	1	12655	12655		63.306	2.3343	1	114240	+		43085	18002	28532	28648	43635	43635					0.08072118971040254
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.791015625	2	575.790578	1149.5666	0.96306	0.00055452	-0.52634	-0.00030306	0.43672	0.00025146	575.7902044715357	21.233	0.37461	21.233	21.087	21.462	0					33	11	5	0	0	0	0.013123	1	5792	5792		131.12	66.909	1	2171700			43086	6105	28533	28649	43636	43636					-0.002197835988681618
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.7909545898438	2	575.790578	1149.5666	-0.092155	-5.3062E-05	0.36094	0.00020783	0.26879	0.00015476	575.7907972584486	21.558	0.7843	21.558	21.247	22.031	0					37	18	5	0	0	0	0.048505	1	6836	6836		109.83	49.899	1	18099000			43087	6105	28533	28649	43637	43637					-0.002197835988681618
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.7919311523438	2	575.790578	1149.5666	0.047455	2.7324E-05	0.42085	0.00024232	0.46831	0.00026965	575.7907838123722	21.286	0.51516	21.286	21.095	21.61	0					48	16	5	0	0	0	0.080628	1	6043	6043		99.013	35.479	1	4078500			43088	6105	28533	28649	43638	43638					-0.002197835988681618
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.791015625	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.472	1	21.472	20.972	21.972	0								0	0	0	0.018905	1	7125	7125		120.27	54.807	1				43089	6105	28533	28649	43639	43639					-0.002197835988681618
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.790771484375	2	575.790578	1149.5666	0.5983	0.0003445	-0.26903	-0.00015491	0.32927	0.00018959	575.7904666246359	21.35	0.34243	21.35	21.2	21.542	0					20	7	4	0	0	0	0.0077833	1	6161	6161		154.01	75.747	1	1083400			43090	6105	28533	28649	43640	43640					-0.002197835988681618
TIQYFSPTQ	9	Unmodified	_TIQYFSPTQ_					0	0	0		ENST00000488118.6_1_10:111643840-111643882:-|nuORF	ENST00000488118.6_1_10:111643840-111643882:-|nuORF	ENST00000488118.6_1_10:111643840-111643882:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.77001953125	2	542.769114	1083.52368	1.0705	0.00058104	-0.0017116	-9.2899E-07	1.0688	0.00058011	542.7691362419084	33.292	0.27408	33.292	33.118	33.392	0					18	8	3	0	0	0	0.47038	1	11630	11630		35.618	2.8059	1	264240			43091	10044	28534	28650	43641	43641					-0.014745536562713824
TIRKIPDM	8	Unmodified	_TIRKIPDM_					0	0	0			REV__CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	REV__CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.27685546875	2	487.278595	972.542637	-0.95058	-0.0004632	-2.3411	-0.0011408	-3.2917	-0.001604	487.27734277872065	28.044	0.1417	28.044	27.977	28.119	0					9	5	2	0	0	0	0.64144	1	9005	9005		40.573	13.777	1	71405	+		43092	12409	28535	28651	43642	43642					0.05526704433771101
TIRKTHGT	8	Unmodified	_TIRKTHGT_					0	0	0			REV__FAM91A1|p.A379T|3|0.25|ENSG00000176853|chr8:123787317-123787317|G/A|missense_variant	REV__FAM91A1|p.A379T|3|0.25|ENSG00000176853|chr8:123787317-123787317|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.2650451660156	2	457.264333	912.514114	0.76573	0.00035014	-0.36798	-0.00016826	0.39775	0.00018188	457.2641378586589	47.35	0.83438	47.35	47.173	48.007	0					61	51	2	0	0	0	0.7976	1	17436	17436		20.947	0	1	76236	+		43093	20662	28536	28652	43643	43643					0.05435722848869773
TIRPWLSP	8	Unmodified	_TIRPWLSP_					0	0	0			REV__PHF21A|p.N200Tfs*67|2|0.23|ENSG00000135365|chr11:45971129-45971129|T/-|frameshift_variant	REV__PHF21A|p.N200Tfs*67|2|0.23|ENSG00000135365|chr11:45971129-45971129|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.281494140625	2	485.279452	968.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.034	1	32.034	31.534	32.534	0								0	0	0	1.7419	1	11097	11097		35.618	2.1253	1		+		43094	21364	28537	28653	43644	43644					0.05882081514039328
TIRQFPIGSE	10	Unmodified	_TIRQFPIGSE_					0	0	0		THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant;THSD7A|p.N1009Mfs*47|1|0.08|ENSG00000005108|chr7:11446099-11446099|T/-|frameshift_variant;THSD7A|p.C1369Lfs*5|1|0.13|ENSG00000005108|chr7:11406431-11406432|-/A|frameshift_variant;THSD7A|p.R1591Kfs*62|1|0.26|ENSG00000005108|chr7:11379101-11379102|-/C|frameshift_variant;ENSG00000005108|ENST00000423059|THSD7A	THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant	THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.3093872070312	2	574.308938	1146.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.639	1	22.639	22.139	23.139	0								0	0	0	0.3998	1	6778	6778		25.574	0	1				43095	954	28538	28654	43645	43645					0.03588513017712103
TIRTIDYRK	9	Unmodified	_TIRTIDYRK_					0	0	0		RBM15|p.P592Qfs*23|1|0.22|ENSG00000162775|chr1:110341176-110341176|C/-|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;RBM15|p.G910Afs*41|1|0.42|ENSG00000162775|chr1:110342129-110342129|G/-|frameshift_variant;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	RBM15|p.P592Qfs*23|1|0.22|ENSG00000162775|chr1:110341176-110341176|C/-|frameshift_variant	RBM15|p.P592Qfs*23|1|0.22|ENSG00000162775|chr1:110341176-110341176|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	389.22772216796875	3	389.227779	1164.66151	-1.2124	-0.00047192	1.0668	0.00041523	-0.14563	-5.6684E-05	389.2281781618065	22.696	0.25409	22.696	22.63	22.884	0					16	9	3	0	0	0	0.3269	1	6714	6714		47.96	2.0514	1	211410			43096	5497	28539	28655	43646	43646					0.08576194662964554
TIRVPKAG	8	Unmodified	_TIRVPKAG_					0	0	0		USP5|p.F362Lfs*66|1|0.04|ENSG00000111667|chr12:6859493-6859494|-/A|frameshift_variant;USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	USP5|p.F362Lfs*66|1|0.04|ENSG00000111667|chr12:6859493-6859494|-/A|frameshift_variant	USP5|p.F362Lfs*66|1|0.04|ENSG00000111667|chr12:6859493-6859494|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.26617431640625	2	421.266345	840.518136	-0.919	-0.00038715	0.41915	0.00017657	-0.49985	-0.00021057	421.2666110391702	20.928	0.32576	20.928	20.685	21.01	0					18	7	3	0	0	0	0.67394	1	6564	6564		37.159	0.13063	1	1085700			43097	2683	28540	28656	43647	43647					0.09149812342559471
TISAFLGTLG	10	Unmodified	_TISAFLGTLG_					0	0	0			REV__tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	REV__tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2764587402344	2	490.276575	978.538597	0.81136	0.00039779	-0.74845	-0.00036695	0.062904	3.0841E-05	490.27616000074534	36.6	0.47714	36.6	36.247	36.724	0					22	13	2	0	0	0	0.44469	1	13826	13826		51.335	1.8939	1	325420	+		43098	21773	28541	28657	43648	43648					0.04846938211721863
TISAQNLSIV	10	Unmodified	_TISAQNLSIV_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2980346679688	2	523.298039	1044.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.786	1	40.786	40.286	41.286	0								0	0	0	0.28607	1	13628	13628		53.089	7.137	1		+		43099	14122	28542	28658	43649	43649					0.061017082691250835
TISDWDLPMV	10	Unmodified	_TISDWDLPMV_					0	0	0			REV__ENST00000503335.6_1_5:126626657-126667083:+|nuORF	REV__ENST00000503335.6_1_5:126626657-126667083:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.78271484375	2	588.783907	1175.55326	-0.15758	-9.2779E-05	-3.4096	-0.0020075	-3.5672	-0.0021003	588.7824528933943	12.935	0.27427	12.935	12.738	13.012	0					14	6	3	0	0	0	0.7005	1	3018	3018		21.96	0.25755	1	159360	+		43100	19054	28543	28659	43650	43650					-0.02749357702487032
TISERPIKPF	10	Unmodified	_TISERPIKPF_					0	0	0			REV__ENST00000415609.6_1_3:69110996-69111038:-|nuORF	REV__ENST00000415609.6_1_3:69110996-69111038:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	396.5628662109375	3	396.564279	1186.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.406	1	17.406	16.906	17.906	0								0	0	0	0.40797	1	4333	4333		28.081	0	1		+		43101	19028	28544	28660	43651	43651					0.08513962948518383
TISPKKGDG	9	Unmodified	_TISPKKGDG_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.75042724609375	2	451.750724	901.486896	0.66051	0.00029838	-2.3817	-0.001076	-1.7212	-0.00077757	451.7501458494354	15.414	0.13357	15.414	15.369	15.503	0					5	3	2	0	0	0	0.37197	1	3988	3988		44.117	3.3386	1	507540	+		43102	13458	28545	28661	43652	43652					0.032211945178119095
TISSLKCLPE	10	Unmodified	_TISSLKCLPE_					0	0	0			REV__ENST00000482160.5_1_X:109931866-110002981:-|nuORF	REV__ENST00000482160.5_1_X:109931866-110002981:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.1978454589844	3	364.198609	1089.574	0.28129	0.00010245	-2.1502	-0.00078311	-1.8689	-0.00068067	364.19764507609943	13.662	0.11304	13.662	13.608	13.721	0					4	2	2	0	0	0	0.60076	1	3387	3387		25.126	0	1	102540	+		43103	19609	28546	28662	43653	43653					0.03279232677186883
TISVNRTTY	9	Unmodified	_TISVNRTTY_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7803955078125	2	527.780013	1053.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.55	1	16.55	16.05	17.05	0								0	0	0	0.28666	1	3787	3787		37.812	7.4938	1				43104	22939	28547	28663	43654	43654					0.02084251092287559
TISYTDLE	8	Unmodified	_TISYTDLE_					0	0	0			REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.22491455078125	2	471.226748	940.438943	-0.55268	-0.00026044	-4.2387	-0.0019974	-4.7914	-0.0022578	471.2249649329062	24.587	0.25957	24.587	24.48	24.739	0					12	5	3	0	0	0	0.52345	1	8512	8512		57.811	0	1	545520	+		43105	12653	28548	28664	43655	43655					-0.033659241929058226
TITDQKNKE	9	Unmodified	_TITDQKNKE_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.78173828125	2	538.782753	1075.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.982	1	19.982	19.482	20.482	0								0	0	0	0.22284	1	5508	5508		47.657	0	1		+		43106	15035	28549	28665	43656	43656					0.01619929884100202
TITGMHSVEV	10	Unmodified	_TITGMHSVEV_					0	0	0		ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9|DDX11	ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9|DDX11	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2693481445312	2	537.268424	1072.5223	2.0994	0.0011279	-0.33538	-0.00018019	1.764	0.00094775	537.2681918145472	39.14	1.9396	39.14	38.312	40.251	0					175	73	3	0	0	0	0.60076	1	15255	15255		34.173	5.023	1	496210			43107	1070;11418	28550	28666	43657	43657					-0.011065110166782688
TITLTRNDKD	10	Unmodified	_TITLTRNDKD_					0	0	0			REV__tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1	REV__tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	588.8145751953125	2	588.814584	1175.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.014	1	34.014	33.514	34.514	0								0	0	0	0.28704	1	13071	13071		52.937	1.744	1		+		43108	22021	28551	28667	43658	43658					0.03383290321175991
TIVHELMY	8	Unmodified	_TIVHELMY_					0	0	0			REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2579345703125	2	503.257328	1004.5001	0.73787	0.00037134	0.31029	0.00015615	1.0482	0.00052749	503.2574946807816	45.622	0.25206	45.622	45.534	45.786	0					18	14	2	0	0	0	0.67475	1	16952	16952		37.028	1.4102	1	48251	+		43109	16982	28552	28668	43659	43659					-0.001966906944630864
TIVRESKWTGA	11	Unmodified	_TIVRESKWTGA_					0	0	0			REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	624.8427124023438	2	624.340769	1246.66699	-2.1141	-0.0013199	2.7415	0.0017116	0.62735	0.00039168	624.3426912415657	25.584	0.13846	25.584	25.503	25.642	0					9	4	3	0	0	0	0.33926	1	8152	8152		58.23	8.6939	1	102330	+		43110	13517	28553	28669	43660	43660					0.053518734548106295
TIWGRPGGAAL	11	Unmodified	_TIWGRPGGAAL_					0	0	0		ENST00000261192.11_1_12:25102083-25102185:-|nuORF	ENST00000261192.11_1_12:25102083-25102185:-|nuORF	ENST00000261192.11_1_12:25102083-25102185:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8047485351562	2	549.806365	1097.59818	-1.4594	-0.00080241	-1.156	-0.00063557	-2.6154	-0.001438	549.8055615456997	24.725	0.18811	24.725	24.626	24.814	0					7	4	2	0	0	0	0.60656	1	7761	7761		36.447	19.742	1	186620			43111	8293	28554	28670	43661	43661					0.053282539457541134
TIYDKYNI	8	Unmodified	_TIYDKYNI_					0	0	0			REV__ENSG00000203666|ENST00000366523|EFCAB2	REV__ENSG00000203666|ENST00000366523|EFCAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.266357421875	2	515.266207	1028.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.586	1	45.586	45.086	46.086	0								0	0	0	1.7419	1	17625	17625		63.306	2.3343	1		+		43112	17457	28555	28671	43662	43662					0.004743478320506256
TIYNAAIQK	9	Unmodified	_TIYNAAIQK_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2874755859375	2	511.287474	1020.5604	1.1312	0.00057835	-0.63481	-0.00032457	0.49636	0.00025378	511.28708985120636	26.806	0.23717	26.806	26.75	26.987	0					19	8	3	0	0	0	0.28897	1	8193	8193		51.193	10.415	1	117770			43113	5666	28557	28672	43663	43663					0.05093742960286818
TIYNAAIQK	9	Unmodified	_TIYNAAIQK_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.28778076171875	2	511.287474	1020.5604	1.0102	0.00051652	-0.78492	-0.00040132	0.22531	0.0001152	511.2869535512009	27.051	0.37798	27.051	26.927	27.305	0					26	9	4	0	0	0	0.035106	1	9398	9398		104.01	32.718	1	802950			43114	5666	28557	28672	43664	43664					0.05093742960286818
TIYNAAIQK	9	Unmodified	_TIYNAAIQK_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2878112792969	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.866	1	26.866	26.366	27.366	0								0	0	0	0.14033	1	8713	8713		62.107	10.772	1				43115	5666	28557	28672	43665	43665					0.05093742960286818
TIYNAAIQK	9	Unmodified	_TIYNAAIQK_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2879638671875	2	511.287474	1020.5604	0.022337	1.142E-05	0.6453	0.00032994	0.66764	0.00034136	511.2876953495806	27.01	0.26851	27.01	26.902	27.17	0					12	5	3	0	0	0	0.037924	1	9601	9601		101.25	33.759	1	808510			43116	5666	28557	28672	43666	43666					0.05093742960286818
TIYNAAIQK	9	Unmodified	_TIYNAAIQK_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2879638671875	2	511.287474	1020.5604	1.3974	0.0007145	-0.59771	-0.0003056	0.79973	0.00040889	511.286756740361	27.059	0.37025	27.059	26.885	27.255	0					13	7	3	0	0	0	0.095583	1	9621	9621		80.455	24.021	1	657720			43117	5666	28557	28672	43667	43667					0.05093742960286818
TIYRLCKGM	9	Unmodified	_TIYRLCKGM_					0	0	0			REV__ENST00000440353.5_1_2:38177721-38224681:+|nuORF	REV__ENST00000440353.5_1_2:38177721-38224681:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.7855224609375	2	542.78573	1083.55691	0.26675	0.00014479	0.12042	6.5364E-05	0.38717	0.00021015	542.7855925288019	18.195	0.11542	18.195	18.15	18.265	0					7	4	2	0	0	0	0.45358	1	4721	4721		37.159	6.8414	1	68504	+		43118	19229	28558	28673	43668	43668					0.01847033590411229
TIYSSRSLI	9	Unmodified	_TIYSSRSLI_					0	0	0		ENST00000401878.7_2_7:155573289-155573589:+|nuORF	ENST00000401878.7_2_7:155573289-155573589:+|nuORF	ENST00000401878.7_2_7:155573289-155573589:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.197509765625	3	347.197596	1038.57096	0.50109	0.00017398	-0.43869	-0.00015231	0.062399	2.1665E-05	347.19742949549334	26.565	0.52987	26.565	26.276	26.805	0					21	12	4	0	0	0	0.50461	1	9170	9170		31.53	3.4483	1	928210			43119	9256	28559	28674	43669	43669					0.053217256147036096
TKAEGVAL	8	Unmodified	_TKAEGVAL_					0	0	0		nc|ENSG00000103710|Q9NYN1-3|RASL12;nc|ENSG00000103710|Q9NYN1-2|RASL12;ENSG00000103710|ENST00000220062|RASL12	nc|ENSG00000103710|Q9NYN1-3|RASL12	nc|ENSG00000103710|Q9NYN1-3|RASL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.72906494140625	2	394.729261	787.443968	0.11037	4.3566E-05	-0.42893	-0.00016931	-0.31856	-0.00012574	394.72903027483596	23.971	0.26619	23.971	23.864	24.13	0					11	5	3	0	0	0	0.27512	1	8339	8339		90.777	0.40684	1	1532800			43120	2257	28560	28675	43670	43670					0.04174424460370574
TKAFSPVY	8	Unmodified	_TKAFSPVY_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.7432861328125	2	456.744911	911.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.48	1	14.48	13.98	14.98	0								0	0	0	1.7419	1	3074	3074		45.952	5.3793	1		+		43121	14796	28561	28676	43671	43671					0.015989974944773166
TKAYNWLK	8	Unmodified	_TKAYNWLK_					0	0	0			REV__ENSG00000047578|ENST00000261588|KATNIP	REV__ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2886962890625	2	512.284734	1022.55492	-0.45296	-0.00023204	0.5227	0.00026777	0.069745	3.5729E-05	512.2849182015211	41.217	0.51022	41.217	41.12	41.631	0					59	21	3	0	0	0	0.72381	1	16344	16344		30.504	1.3541	1	3038900	+		43122	13011	28562	28677	43672	43672					0.04454064168464811
TKCITVRQ	8	Unmodified	_TKCITVRQ_					0	0	0			REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7681579589844	2	474.768394	947.522236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.228	1	12.228	11.728	12.728	0								0	0	0	1.7419	1	2701	2701		18.324	0.95945	1		+		43123	12416	28563	28678	43673	43673					0.04637533773973246
TKDCEKCK	8	Unmodified	_TKDCEKCK_					0	0	0			REV__ZNF91|p.P685L|1|0.22|ENSG00000167232|chr19:23360925-23360925|G/A|missense_variant	REV__ZNF91|p.P685L|1|0.22|ENSG00000167232|chr19:23360925-23360925|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.7228698730469	2	477.722795	953.431037	0.64641	0.00030881	-0.91874	-0.0004389	-0.27233	-0.0001301	477.7225160281229	18.875	0.33944	18.875	18.792	19.132	0					15	7	3	0	0	0	0.43813	1	5881	5881		66.429	2.222	1	2599300	+		43124	16176	28564	28679	43674	43674					-0.04754097985676253
TKDKGQAG	8	Unmodified	_TKDKGQAG_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.7140808105469	2	402.714142	803.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.621	1	12.621	12.121	13.121	0								0	0	0	1.7419	1	2885	2885		88.643	6.3378	1		+		43125	13283	28565	28680	43675	43675					0.004160657951956637
TKDLLFRD	8	Unmodified	_TKDLLFRD_					0	0	0		nc|ENSG00000091513|P02787|TF;ENSG00000091513|ENST00000402696|TF;ENST00000467842.1_1_3:133494266-133496087:+|nuORF;ENST00000461695.1_1_3:133489395-133497461:+|nuORF	nc|ENSG00000091513|P02787|TF	nc|ENSG00000091513|P02787|TF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2816467285156	2	504.279649	1006.54475	-0.36541	-0.00018427	-0.29402	-0.00014827	-0.65943	-0.00033254	504.2795972973078	36.41	0.76461	36.41	36.132	36.897	0					45	15	5	0	0	0	0.49216	1	14219	14219		60.972	5.4677	1	1500400			43126	1859	28566	28681	43676	43676					0.04173456443231771
TKDSEFPIDMQ	11	Oxidation (M)	_TKDSEFPIDM(Oxidation (M))Q_		TKDSEFPIDM(1)Q		TKDSEFPIDM(63)Q	0	0	1		SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant;ENSG00000144451|ENST00000331683|SPAG16;ENST00000452556.5_1_2:214162070-215102915:+|nuORF;nc|ENSG00000144451|Q8N0X2-2|SPAG16	SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant	SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	663.7996826171875	2	663.797743	1325.58093	2.6285	0.0017448	0.20819	0.00013819	2.8367	0.001883	663.79792436988	28.335	0.26628	28.335	28.228	28.495	0					14	5	4	0	0	0	0.29287	1	10268	10268		63.426	6.9927	1	937380			43127	4618	28567	28682	43677	43677		191			-0.06883499232890244
TKEAVNPI	8	Unmodified	_TKEAVNPI_					0	0	0			REV__ENSG00000164690|ENST00000297261|SHH	REV__ENSG00000164690|ENST00000297261|SHH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.24786376953125	2	436.247818	870.481082	0.64979	0.00028347	-0.60282	-0.00026298	0.046974	2.0492E-05	436.24762008219636	21.043	0.33934	21.043	20.848	21.187	0					14	8	2	0	0	0	0.58597	1	6645	6645		51.335	0	1	535560	+		43128	16000	28568	28683	43678	43678					0.04066096006135922
TKECSEKL	8	Unmodified	_TKECSEKL_					0	0	0			REV__tr|U7SL97|U7SL97_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02024PE=4SV=1	REV__tr|U7SL97|U7SL97_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02024PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2351379394531	2	469.236593	936.458632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.045	1	37.045	36.545	37.545	0								0	0	0	1.7419	1	13269	13269		66.429	9.7082	1		+		43129	21769	28569	28684	43679	43679					-0.012138714537854867
TKEEFTKM	8	Unmodified	_TKEEFTKM_					0	0	0		ENST00000556303.1_1_14:35074800-35099358:-|nuORF;ENST00000601728.1_1_19:23310047-23310578:-|nuORF;nc|ENSG00000129515|Q9UNH7-2|SNX6;SNX6|p.N346Ifs*30|1|0.21|ENSG00000129515|chr14:34567934-34567934|T/-|frameshift_variant;ENSG00000129515|ENST00000362031|SNX6	ENST00000556303.1_1_14:35074800-35099358:-|nuORF	ENST00000556303.1_1_14:35074800-35099358:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2530212402344	2	507.252243	1012.48993	-0.64242	-0.00032587	1.7025	0.00086362	1.0601	0.00053775	507.2531963927152	38.173	0.20167	38.173	38.107	38.309	0					18	10	3	0	0	0	0.72524	1	12876	12876		30.318	0	1	105790			43130	3601	28570	28685	43680	43680					-0.01581298419682753
TKEEYVEK	8	Unmodified	_TKEEYVEK_					0	0	0		tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.260986328125	2	513.261122	1024.50769	1.2927	0.00066348	-1.6243	-0.00083367	-0.33158	-0.00017019	513.2602739264438	31.982	0.1536	31.982	31.894	32.048	0					6	3	2	0	0	0	0.58597	1	12132	12132		51.335	7.2187	1	357300			43131	22826	28571	28686	43681	43681					-0.0035825989318709617
TKEFDKVML	9	Unmodified	_TKEFDKVML_					0	0	0			REV__tr|U7SG87|U7SG87_FUSNUAlanyl-transferRNAsynthetasesfamilyprofiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02220PE=4SV=1	REV__tr|U7SG87|U7SG87_FUSNUAlanyl-transferRNAsynthetasesfamilyprofiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02220PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.866943359375	3	370.86697	1109.57908	0.82393	0.00030557	-1.1037	-0.00040932	-0.27976	-0.00010375	370.8666337661241	26.043	0.41626	26.043	25.882	26.298	0					21	8	4	0	0	0	0.25716	1	9160	9160		53.089	0	1	5091000	+		43132	21688	28572	28687	43682	43682					0.028675365398157737
TKETSKIQ	8	Unmodified	_TKETSKIQ_					0	0	0		nc|ENSG00000169064|A8MT70-3|ZBBX;nc|ENSG00000169064|A8MT70|ZBBX;ENSG00000169064|ENST00000675490|ZBBX	nc|ENSG00000169064|A8MT70-3|ZBBX	nc|ENSG00000169064|A8MT70-3|ZBBX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.76434326171875	2	467.763832	933.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.408	1	21.408	20.908	21.908	0								0	0	0	1.7419	1	5895	5895		32.812	2.3088	1				43133	6145	28573	28688	43683	43683					0.04369463689283748
TKFFDLKAK	9	Unmodified	_TKFFDLKAK_					0	0	0			REV__ENST00000522785.1_1_8:42176239-42177326:+|nuORF	REV__ENST00000522785.1_1_8:42176239-42177326:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.8831481933594	3	366.54997	1096.62808	-0.10729	-3.9327E-05	-4.1496	-0.001521	-4.2569	-0.0015604	366.88282394046746	16.262	0.080765	16.262	16.228	16.309	0					4	2	2	0	0	0	0.56424	1	3828	3828		25.574	0	1	63993	+		43134	13721	28574	28689	43684	43684					0.08363192891079052
TKFMVFAY	8	Unmodified	_TKFMVFAY_					0	0	0			REV__RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant	REV__RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7582092285156	2	503.756964	1005.49937	0.75349	0.00037958	2.0157	0.0010154	2.7692	0.001395	503.75805690347767	40.622	0.24339	40.622	40.564	40.807	0					13	11	2	0	0	0	0.75243	1	15486	15486		26.796	1.3459	1	40618	+		43135	16955	28575	28690	43685	43685					-0.0031548534351486524
TKGESTEK	8	Unmodified	_TKGESTEK_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.2291564941406	2	440.224539	878.434526	-0.55083	-0.00024249	0.31198	0.00013734	-0.23884	-0.00010514	440.22465653237856	15.605	0.26897	15.605	15.546	15.815	0					13	5	3	0	0	0	0.36488	1	4137	4137		75.043	0	1	2031300	+		43136	15637	28576	28691	43686	43686					-0.00955388615807351
TKGKTSVTKLD	11	Unmodified	_TKGKTSVTKLD_					0	0	0			REV__ENSG00000065618|ENST00000648076|COL17A1;REV__COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant	REV__ENSG00000065618|ENST00000648076|COL17A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.34326171875	2	589.342978	1176.6714	0.61926	0.00036496	0.31059	0.00018304	0.92985	0.000548	589.3430257654012	52.798	0.93623	52.798	52.439	53.375	0					131	58	3	0	0	0	0.70609	1	16993	16993		27.047	0.98393	1	173970	+		43137	13120;12546	28577	28692	43687	43687					0.09013337877695449
TKGRASPLVCA	11	Unmodified	_TKGRASPLVCA_					0	0	0			REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF	REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.2063293457031	3	368.206098	1101.59646	0.35668	0.00013133	-0.6771	-0.00024931	-0.32042	-0.00011798	368.20586031186383	26.661	0.15527	26.661	26.565	26.721	0					9	3	3	0	0	0	0.65378	1	8608	8608		32.034	7.5149	1	172810	+		43138	18762	28578	28693	43688	43688					0.04972876865485887
TKHCDNVLY	9	Unmodified	_TKHCDNVLY_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7618408203125	2	546.760766	1091.50698	1.8557	0.0010146	-2.0141	-0.0011012	-0.15837	-8.659E-05	546.7599731798769	41.876	0.58897	41.876	41.508	42.097	0					44	25	3	0	0	0	0.24095	1	16442	16442		56.721	3.3696	1	411640			43139	3757	28579	28694	43689	43689					-0.03511377813879335
TKHLEAVK	8	Unmodified	_TKHLEAVK_					0	0	0			REV__nc|ENSG00000079819|O43491-2|EPB41L2	REV__nc|ENSG00000079819|O43491-2|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2767639160156	2	463.276909	924.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.943	1	20.943	20.443	21.443	0								0	0	0	1.7419	1	5984	5984		45.972	1.8554	1		+		43140	13287	28580	28695	43690	43690					0.07397777651419801
TKHLRGGG	8	Unmodified	_TKHLRGGG_					0	0	0		CYP8B1|p.D134G|2|0.22|ENSG00000180432|chr3:42875416-42875416|T/C|missense_variant	CYP8B1|p.D134G|2|0.22|ENSG00000180432|chr3:42875416-42875416|T/C|missense_variant	CYP8B1|p.D134G|2|0.22|ENSG00000180432|chr3:42875416-42875416|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.2378845214844	2	413.238119	824.461684	0.00877	3.6241E-06	-0.18764	-7.754E-05	-0.17887	-7.3916E-05	413.23800713353234	52.409	0.26905	52.409	52.322	52.591	0					19	16	2	0	0	0	0.7887	1	15559	15559		12.959	12.959	1	73245			43141	733	28581	28696	43691	43691					0.04243184505912723
TKIEKNRLSYI	11	Unmodified	_TKIEKNRLSYI_					0	0	0			REV__ENSG00000189181|ENST00000342623|OR14I1	REV__ENSG00000189181|ENST00000342623|OR14I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	682.8973388671875	2	682.898451	1363.78235	-1.6551	-0.0011303	-0.74497	-0.00050874	-2.4001	-0.001639	682.8978890554383	41.565	1.2617	41.565	40.769	42.031	0					79	48	2	0	0	0	0.69524	1	16390	16390		28.081	1.0342	1	105290	+		43142	17213	28582	28697	43692	43692					0.11500977585819783
TKIGYVGNEGI	11	Unmodified	_TKIGYVGNEGI_					0	0	0			REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	384.209228515625	3	384.208273	1149.60299	0.53978	0.00020739	-0.24438	-9.3891E-05	0.29541	0.0001135	384.20820794077133	22.853	0.10919	22.853	22.781	22.89	0					8	3	3	0	0	0	0.57554	1	6523	6523		38.714	2.3964	1	240180	+		43143	22033	28583	28698	43693	43693					0.034170932978668134
TKIGYVGNEGI	11	Unmodified	_TKIGYVGNEGI_					0	0	0			REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.2082824707031	3	384.208273	1149.60299	0.84308	0.00032392	-0.51475	-0.00019777	0.32833	0.00012615	384.2080172214751	23.184	0.3196	23.184	23.049	23.369	0					18	7	4	0	0	0	0.26168	1	7630	7630		66.92	11.836	1	2495500	+		43144	22033	28583	28698	43694	43694					0.034170932978668134
TKILLNYF	8	Unmodified	_TKILLNYF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N725Mfs*11|1|0.12|ENSG00000152952|chr3:146070757-146070757|T/-|frameshift_variant;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.2956848144531	2	506.29731	1010.58007	0.78051	0.00039517	-4.3915	-0.0022234	-3.611	-0.0018282	506.2951448015029	26.104	0.13954	26.104	26.034	26.173	0					8	5	2	0	0	0	0.78142	1	7902	7902		23.042	0	1	44650			43145	5028	28584	28699	43695	43695					0.07520118971035572
TKINGNIV	8	Unmodified	_TKINGNIV_					0	0	0			REV__ENST00000587681.5_1_19:10229095-10230535:-|nuORF	REV__ENST00000587681.5_1_19:10229095-10230535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.2571105957031	2	429.75581	857.497067	-2.8253	-0.0012142	1.5496	0.00066594	-1.2757	-0.00054824	429.7565106830684	35.65	0.19405	35.65	35.518	35.712	0					11	8	2	0	0	0	0.78142	1	12706	12706		23.042	1.0826	1	61769	+		43146	20497	28585	28700	43696	43696					0.06261802243034253
TKIQLLAGSI	10	Unmodified	_TKIQLLAGSI_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.326416015625	2	522.326599	1042.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.012	1	32.012	31.512	32.512	0								0	0	0	0.30539	1	10656	10656		45.972	5.1941	1		+		43147	15312	28586	28701	43697	43697					0.11903175545535305
TKISRGTTE	9	Unmodified	_TKISRGTTE_					0	0	0		ENST00000459899.1_1_14:35857513-35858113:-|nuORF	ENST00000459899.1_1_14:35857513-35858113:-|nuORF	ENST00000459899.1_1_14:35857513-35858113:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.5176696777344	3	331.517218	991.529823	1.5007	0.0004975	0.12616	4.1824E-05	1.6268	0.00053932	331.51719279073814	13.016	0.36826	13.016	12.929	13.297	0					12	8	2	0	0	0	0.5879	1	3065	3065		23.523	23.523	1	224040			43148	9716	28587	28702	43698	43698					0.03371964575228503
TKKDKRMQNI	10	Unmodified	_TKKDKRMQNI_					0	0	0			REV__ENST00000571084.1_1_17:54921416-54923197:+|nuORF	REV__ENST00000571084.1_1_17:54921416-54923197:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.2433776855469	3	421.23969	1260.69724	2.604	0.0010969	3.3742	0.0014214	5.9783	0.0025183	421.2412085933066	20.718	2.1082	20.718	18.818	20.926	0					106	42	4	0	0	0	0.5155	1	6592	6592		43.651	1.3127	1	3682300	+		43149	15553	28588	28703	43699	43699					0.07731908848359126
TKKMKKLEK	9	Oxidation (M)	_TKKM(Oxidation (M))KKLEK_		TKKM(1)KKLEK		TKKM(64)KKLEK	0	0	1		ENSG00000164440|ENST00000358430|TXLNB;TXLNB|p.P545Lfs*2|1|0.31|ENSG00000164440|chr6:139242947-139242947|G/-|frameshift_variant	ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.3532104492188	2	575.354834	1148.69511	-1.5452	-0.00088907	-0.85838	-0.00049387	-2.4036	-0.0013829	575.3542465014389	19.146	0.44471	19.146	19.048	19.492	0					22	10	4	0	0	0	0.18416	1	5147	5147		63.534	63.534	1	2769500			43150	5692	28589	28704	43700	43700		231			0.12671480110543598
TKLEHARIK	9	Unmodified	_TKLEHARIK_					0	0	0		CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant;CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.8373413085938	2	548.33529	1094.65603	1.1567	0.00063428	0.59871	0.00032829	1.7554	0.00096257	548.3356730371413	19.836	0.18862	19.836	19.743	19.932	0					10	4	3	0	0	0	0.1424	1	5456	5456		69.628	3.1983	1	398490			43151	555	28590	28705	43701	43701					0.11248515871147902
TKLLPGNE	8	Unmodified	_TKLLPGNE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.D27440_G27441insVNESF|1|0.05|ENSG00000155657|chr2:178558109-178558110|-/CAAAGCTTTCATTAA|inframe_insertion;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.2476501464844	2	436.247818	870.481082	0.22938	0.00010007	0.098511	4.2975E-05	0.32789	0.00014304	436.2478554176959	20.733	0.20612	20.733	20.596	20.802	0					9	6	2	0	0	0	0.73426	1	5612	5612		29.15	0	1	102380			43152	5134;11594	28591	28706	43702	43702					0.040660960061472906
TKLLSISVK	9	Unmodified	_TKLLSISVK_					0	0	0			REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.2181701660156	3	330.21822	987.632832	0.52544	0.00017351	-0.33717	-0.00011134	0.18827	6.2172E-05	330.21802513136794	25.661	0.171	25.661	25.573	25.744	0					10	4	3	0	0	0	0.41958	1	8802	8802		40.058	0	1	406290	+		43153	17005	28592	28707	43703	43703					0.13852077033845944
TKLPRSPI	8	Unmodified	_TKLPRSPI_					0	0	0			REV__ENSG00000100288|ENST00000406938|CHKB	REV__ENSG00000100288|ENST00000406938|CHKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	456.2874450683594	2	456.287277	910.560001	0.87872	0.00040095	-1.0034	-0.00045786	-0.12473	-5.6914E-05	456.28682285206395	32.412	0.56813	32.412	32.153	32.721	0					22	11	3	0	0	0	0.32815	1	12205	12205		79.451	2.6769	1	687930	+		43154	13535	28593	28708	43704	43704					0.10114368031076992
TKLQSMNSEN	10	Unmodified	_TKLQSMNSEN_					0	0	0		nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1;POT1|p.D617Hfs*20|1|0.02|ENSG00000128513|chr7:124824019-124824020|-/TAGCATGG|frameshift_variant	nc|ENSG00000128513|Q9NUX5-2|POT1	nc|ENSG00000128513|Q9NUX5-2|POT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.271240234375	2	576.271695	1150.52884	1.5643	0.00090147	-2.4686	-0.0014226	-0.90428	-0.00052111	576.2701816724349	16.11	0.18344	16.11	16.064	16.247	0					10	4	3	0	0	0	0.62235	1	4315	4315		31.53	5.9558	1	244680			43155	3544	28594	28709	43705	43705					-0.04040617855957862
TKLTWGPY	8	Unmodified	_TKLTWGPY_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2564392089844	2	483.258185	964.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.19	1	28.19	27.69	28.69	0								0	0	0	1.7419	1	9323	9323		31.955	2.1133	1				43156	4956	28595	28710	43706	43706					0.01814686385796449
TKLWMSYF	8	Oxidation (M)	_TKLWM(Oxidation (M))SYF_		TKLWM(1)SYF		TKLWM(41)SYF	0	0	1		nc|ENSG00000133107|Q9UBN4-6|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4;TRPC4|p.R639Q|1|0.31|ENSG00000133107|chr13:37651428-37651428|C/T|missense_variant;ENST00000426868.6_1_13:38213370-38229407:-|nuORF;TRPC4|p.F797Lfs*3|1|0.6|ENSG00000133107|chr13:37637446-37637446|A/-|frameshift_variant;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;ENSG00000072315|ENST00000262839|TRPC5	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.2667236328125	2	546.265153	1090.51575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.259	1	36.259	35.759	36.759	0								0	0	0	1.7419	1	12285	12285		40.778	8.8233	1				43157	3839	28596	28711	43707	43707		159			-0.02588404177436132
TKPATSSPVP	10	Unmodified	_TKPATSSPVP_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	328.8502502441406	3	328.850197	983.528761	0.52743	0.00017344	-0.74855	-0.00024616	-0.22112	-7.2715E-05	328.85002641022413	15.198	0.43721	15.198	15.053	15.49	0					23	10	3	0	0	0	0.62235	1	3862	3862		29.551	0	1	15957000	+		43158	14621	28597	28712	43708	43708					0.03633750206336117
TKPKASLNLP	10	Unmodified	_TKPKASLNLP_					0	0	0			REV__SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant	REV__SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.824462890625	2	534.824224	1067.63389	0.29072	0.00015548	-0.18792	-0.0001005	0.1028	5.4981E-05	534.8244920598048	31.194	0.20387	31.194	31.012	31.216	0					8	4	2	0	0	0	0.48965	1	11739	11739		46.457	6.3986	1	61690	+		43159	14749	28598	28713	43709	43709					0.10278291402732975
TKPRLNASA	9	Unmodified	_TKPRLNASA_					0	0	0			REV__GTF3C1|p.S767Vfs*7|3|0.31|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	REV__GTF3C1|p.S767Vfs*7|3|0.31|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2778625488281	2	479.277441	956.540328	0.66257	0.00031756	-0.53822	-0.00025796	0.12435	5.9599E-05	479.2771463668172	47.163	0.93089	47.163	46.908	47.839	0					68	54	2	0	0	0	0.56424	1	18004	18004		25.574	0	1	92713	+		43160	13258	28599	28714	43710	43710					0.06031992020302823
TKPSSEKKI	9	Unmodified	_TKPSSEKKI_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.86932373046875	3	339.86948	1016.58661	0.66948	0.00022754	-0.95965	-0.00032616	-0.29017	-9.8618E-05	339.8691138100394	14.657	0.12661	14.657	14.578	14.704	0					8	3	3	0	0	0	0.55379	1	3631	3631		33.922	0	1	1630200			43161	3216	28600	28715	43711	43711					0.07898012131749965
TKPVKCILN	9	Unmodified	_TKPVKCILN_					0	0	0		nc|ENSG00000141446|Q5FWF5-2|ESCO1;ENSG00000141446|ENST00000269214|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.3021545410156	2	508.30207	1014.58959	-0.10439	-5.3062E-05	-0.15718	-7.9893E-05	-0.26157	-0.00013296	508.3019376586874	37.781	0.49054	37.781	37.565	38.055	0					23	10	3	0	0	0	0.48623	1	14754	14754		19.997	1.6724	1	229220			43162	4444	28601	28716	43712	43712					0.08287563984902135
TKQLGKPQ	8	Unmodified	_TKQLGKPQ_					0	0	0			REV__nc|ENSG00000135336|Q9UBD5-3|ORC3	REV__nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2689208984375	2	450.269084	898.523616	0.67835	0.00030544	-1.0041	-0.00045212	-0.32577	-0.00014668	450.2685056350667	12.431	0.17923	12.431	12.304	12.483	0					5	4	2	0	0	0	0.71588	1	2808	2808		31.53	0	1	325510	+		43163	14795	28602	28717	43713	43713					0.07029491134369437
TKQQLSAV	8	Unmodified	_TKQQLSAV_					0	0	0			REV__WWOX|p.K274Nfs*53|1|0.24|ENSG00000186153|chr16:78432515-78432515|A/-|frameshift_variant	REV__WWOX|p.K274Nfs*53|1|0.24|ENSG00000186153|chr16:78432515-78432515|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.75250244140625	2	437.753267	873.491981	0.24866	0.00010885	0.057024	2.4962E-05	0.30568	0.00013381	437.75296413538734	21.238	0.11714	21.238	21.209	21.326	0					5	3	2	0	0	0	0.68432	1	5853	5853		35.618	4.0885	1	88893	+		43164	22297	28603	28718	43714	43714					0.050174983804254225
TKQTRITQ	8	Unmodified	_TKQTRITQ_					0	0	0			REV__ENSG00000185104|ENST00000396153|FAF1	REV__ENSG00000185104|ENST00000396153|FAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2821350097656	2	488.282723	974.550893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.287	1	15.287	14.787	15.787	0								0	0	0	1.7419	1	3915	3915		39.253	2.0937	1		+		43165	17008	28604	28719	43715	43715					0.06259974674730984
TKRVVRSA	8	Unmodified	_TKRVVRSA_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.7877502441406	2	458.787976	915.561398	-0.69057	-0.00031683	0.14044	6.4431E-05	-0.55013	-0.00025239	458.7878983130044	52.935	0.25924	52.935	52.868	53.127	0					22	16	2	0	0	0	0.72381	1	18700	18700		30.504	0	1	190840			43166	6998	28605	28720	43716	43716					0.10024002119848774
TKSFKEPA	8	Unmodified	_TKSFKEPA_					0	0	0			REV__ENSG00000010219|ENST00000543431|DYRK4	REV__ENSG00000010219|ENST00000543431|DYRK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2475891113281	2	454.247818	906.481082	-0.12912	-5.8653E-05	-0.26558	-0.00012064	-0.3947	-0.00017929	454.24764929825903	24.286	0.71281	24.286	23.915	24.628	0					39	14	4	0	0	0	0.51384	1	8557	8557		58.782	0	1	1422100	+		43167	12890	28606	28721	43717	43717					0.024100960061332444
TKSIVEKIQ	9	Unmodified	_TKSIVEKIQ_					0	0	0		nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3	nc|ENSG00000133318|O95197-7|RTN3	nc|ENSG00000133318|O95197-7|RTN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3162841796875	2	523.316232	1044.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.516	1	23.516	23.016	24.016	0								0	0	0	0.3245	1	6819	6819		30.318	0	1				43168	3850	28607	28722	43718	43718					0.09738585165860059
TKSMEPPIEL	10	Unmodified	_TKSMEPPIEL_					0	0	0			REV__ENST00000553027.1_1_12:49318129-49318267:-|nuORF	REV__ENST00000553027.1_1_12:49318129-49318267:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.8021240234375	2	572.799557	1143.58456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.757	1	25.757	25.257	26.257	0								0	0	0	0.3963	1	7786	7786		26.693	0	1		+		43169	20215	28608	28723	43719	43719					0.018512153316578406
TKSNALDIIF	10	Unmodified	_TKSNALDIIF_					0	0	0		ENSG00000182326|ENST00000360817|C1S;C1S|p.W283Lfs*14|1|0.37|ENSG00000182326|chr12:7065934-7065935|-/A|frameshift_variant;C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.3112182617188	2	561.313689	1120.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.286	1	35.286	34.786	35.786	0								0	0	0	0.37129	1	13220	13220		39.253	2.8061	1				43170	6892	28609	28724	43720	43720					0.05734281303239186
TKSTTIRFT	9	Unmodified	_TKSTTIRFT_					0	0	0		SDK2|p.N804K|1|0.24|ENSG00000069188|chr17:73414716-73414716|A/C|missense_variant	SDK2|p.N804K|1|0.24|ENSG00000069188|chr17:73414716-73414716|A/C|missense_variant	SDK2|p.N804K|1|0.24|ENSG00000069188|chr17:73414716-73414716|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.8007202148438	2	527.798206	1053.58186	2.1386	0.0011288	2.371	0.0012514	4.5096	0.0023802	527.7992543298028	40.107	0.10303	40.107	40.012	40.115	0					6	3	2	0	0	0	0.54081	1	15272	15272		14.865	0	1	43918			43171	22379	28610	28725	43721	43721					0.057211279889770594
TKSVYTRSVI	10	Unmodified	_TKSVYTRSVI_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.3328857421875	2	577.332413	1152.65027	1.7534	0.0010123	-1.6018	-0.00092476	0.15163	8.754E-05	577.3316316641676	35.891	0.26996	35.891	35.787	36.057	0					10	8	2	0	0	0	0.56063	1	13951	13951		14.137	0	1	115240			43172	4872	28611	28726	43722	43722					0.08005372568845814
TKTGAKGG	8	Unmodified	_TKTGAKGG_					0	0	0		tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.20654296875	2	360.205953	718.397353	1.2355	0.00044502	0.45042	0.00016225	1.6859	0.00060726	360.20610118473286	46.941	0.22237	46.941	46.868	47.091	0					15	10	2	0	0	0	0.77697	1	18761	18761		4.3163	0	1	86704			43173	23032	28612	28727	43723	43723					0.02688984629105562
TKTLYLCL	8	Unmodified	_TKTLYLCL_					0	0	0			REV__ENST00000558265.5_2_14:103800742-103802258:+|nuORF	REV__ENST00000558265.5_2_14:103800742-103802258:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.7710266113281	2	477.770071	953.52559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.654	1	31.654	31.154	32.154	0								0	0	0	1.7419	1	11546	11546		38.806	1.647	1		+		43174	20267	28613	28728	43724	43724					0.046967838279670104
TKTNGVSDVL	10	Unmodified	_TKTNGVSDVL_					0	0	0			REV__nc|ENSG00000083750|Q5VZM2|RRAGB	REV__nc|ENSG00000083750|Q5VZM2|RRAGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2793579101562	2	517.279846	1032.54514	-1.4646	-0.00075761	0.71603	0.00037039	-0.74858	-0.00038723	517.2801556140079	22.104	0.18149	22.104	22.02	22.202	0					7	4	2	0	0	0	0.46128	1	6558	6558		49.536	0.094497	1	139630	+		43175	20943	28614	28729	43725	43725					0.030168313724288964
TKTQPQAACK	10	Unmodified	_TKTQPQAACK_					0	0	0		nc|ENSG00000169282|Q14722-3|KCNAB1	nc|ENSG00000169282|Q14722-3|KCNAB1	nc|ENSG00000169282|Q14722-3|KCNAB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.28271484375	2	538.281866	1074.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.455	1	13.455	12.955	13.955	0								0	0	0	0.4201	1	2706	2706		19.997	0	1				43176	11640	28615	28730	43726	43726					0.014885975944707752
TKVFEIRT	8	Unmodified	_TKVFEIRT_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.86236572265625	3	331.862437	992.565481	0.38961	0.0001293	-0.75243	-0.0002497	-0.36282	-0.00012041	331.86220121722886	22.128	0.16591	22.128	22.021	22.187	0					8	3	3	0	0	0	0.78142	1	7434	7434		25.574	9.1009	1	319480			43177	3669	28616	28731	43727	43727					0.06890046822900331
TKVFIQMN	8	Unmodified	_TKVFIQMN_					0	0	0			REV__ENST00000598814.1_1_19:18682694-18684218:+|nuORF	REV__ENST00000598814.1_1_19:18682694-18684218:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7643127441406	2	490.76532	979.516088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.813	1	37.813	37.313	38.313	0								0	0	0	1.7419	1	14360	14360		31.955	1.4512	1		+		43178	20584	28617	28732	43728	43728					0.02551015542451296
TKVKEKFQ	8	Unmodified	_TKVKEKFQ_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.534423828125	3	336.53432	1006.58113	-0.67419	-0.00022689	0.26529	8.9279E-05	-0.4089	-0.00013761	336.53443318962087	33.598	1.2971	33.598	33.385	34.682	0					68	53	2	0	0	0	0.79719	1	11465	11465		14.865	0	1	63065			43179	2823	28618	28733	43729	43729					0.07810333339944009
TKVRDDVY	8	Unmodified	_TKVRDDVY_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000475277.1_1_1:235876468-235887465:-|nuORF;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.9414367675781	2	498.261456	994.50836	0.2288	0.000114	-0.30496	-0.00015195	-0.076155	-3.7945E-05	498.26118053304907	22.361	0.20162	22.361	22.279	22.481	0					14	5	4	0	0	0	0.67394	1	6356	6356		37.159	0	1	1127900			43180	4576	28619	28734	43730	43730					0.010885795465128467
TKYEELQI	8	Unmodified	_TKYEELQI_					0	0	0		CON__ENSEMBL:ENSBTAP00000038253	CON__ENSEMBL:ENSBTAP00000038253	CON__ENSEMBL:ENSBTAP00000038253	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2706298828125	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.971	1	33.971	33.471	34.471	0								0	0	0	1.7419	1	11435	11435		47.657	4.7931	1			+	43181	625	28620	28735	43731	43731					0.018063304864881502
TLAALAARARG	11	Unmodified	_TLAALAARARG_					0	0	0			REV__ENST00000472658.1_1_1:16270204-16270420:-|nuORF	REV__ENST00000472658.1_1_1:16270204-16270420:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.8231811523438	2	535.825089	1069.63563	-1.3729	-0.00073561	-1.7803	-0.00095395	-3.1532	-0.0016896	535.8238135406715	24.309	0.09137	24.309	24.251	24.342	0					4	2	2	0	0	0	0.64562	1	7564	7564		32.812	4.7309	1	76907	+		43182	19495	28621	28736	43732	43732					0.10359345211372784
TLAASLTQ	8	Unmodified	_TLAASLTQ_					0	0	0		MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|14|2|sense	MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|14|2|sense	MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|14|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	402.72674560546875	2	402.726718	803.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.107	1	19.107	18.607	19.607	0								0	0	0	1.7419	1	5123	5123		45.952	0	1				43183	11362	28622	28737	43733	43733					0.02930120597761743
TLAGLVLG	8	Unmodified	_TLAGLVLG_					0	0	0		ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.2361145019531	2	372.236722	742.45889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.632	1	20.632	20.132	21.132	0								0	0	0	1.7419	1	5837	5837		20.482	0	1				43184	1700	28623	28738	43734	43734					0.07735916328374515
TLAIEAAG	8	Unmodified	_TLAIEAAG_					0	0	0		ENSG00000197993|ENST00000355265|KEL;ENST00000494148.1_1_7:142651443-142655450:-|nuORF;ENST00000479768.6_1_7:142643674-142659293:-|nuORF	ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.21002197265625	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.102	1	36.102	35.602	36.602	0								0	0	0	1.7419	1	14037	14037		33.516	0	1				43185	7516	28624	28739	43735	43735					0.019344490519983992
TLAILSSKY	9	Unmodified	_TLAILSSKY_					0	0	0			REV__ENST00000480855.1_1_2:172299988-172306494:+|nuORF	REV__ENST00000480855.1_1_2:172299988-172306494:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2917785644531	2	498.292225	994.569897	0.22815	0.00011369	-0.36743	-0.00018309	-0.13927	-6.9399E-05	498.29199923344686	31.656	0.13086	31.656	31.589	31.719	0					14	6	3	0	0	0	0.48389	1	10179	10179		34.173	5.023	1	124360	+		43186	14127	28625	28740	43736	43736					0.07239511245813901
TLAILSSKY	9	Unmodified	_TLAILSSKY_					0	0	0			REV__ENST00000480855.1_1_2:172299988-172306494:+|nuORF	REV__ENST00000480855.1_1_2:172299988-172306494:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.29150390625	2	498.292225	994.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.704	1	31.704	31.204	32.204	0								0	0	0	0.21054	1	10948	10948		49.442	6.5773	1		+		43187	14127	28625	28740	43737	43737					0.07239511245813901
TLAINPGLPF	10	Unmodified	_TLAINPGLPF_					0	0	0			REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.8004150390625	2	521.800217	1041.58588	3.3913	0.0017696	-4.3505	-0.0022701	-0.95918	-0.0005005	521.7974660767364	44.461	0.312	44.461	44.371	44.683	0					9	5	2	0	0	0	0.54197	1	17825	17825		40.778	0.20554	1	65555	+		43188	18644	28626	28741	43738	43738					0.0667521748271156
TLAQFVRPF	9	Unmodified	_TLAQFVRPF_					0	0	0			REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.2071228027344	3	360.206315	1077.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.113	1	45.113	44.613	45.613	0								0	0	0	0.34845	1	17491	17491		25.574	3.8883	1		+		43189	21062	28627	28742	43739	43739					0.06142039576843672
TLARESLVL	9	Unmodified	_TLARESLVL_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.302978515625	2	501.303124	1000.5917	0.93575	0.00046909	-2.5259	-0.0012663	-1.5902	-0.00079717	501.302492016994	41.51	0.30855	41.51	41.411	41.719	0					19	12	2	0	0	0	0.41113	1	16315	16315		40.778	5.1599	1	221950	+		43190	16376	28628	28743	43740	43740					0.09142315994370165
TLARLEQLSP	10	Unmodified	_TLARLEQLSP_					0	0	0			REV__PLXNA3|p.H668Tfs*26|1|0.21|ENSG00000130827|chrX:154464823-154464823|C/-|frameshift_variant	REV__PLXNA3|p.H668Tfs*26|1|0.21|ENSG00000130827|chrX:154464823-154464823|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.3264770507812	2	564.324588	1126.63462	-0.36678	-0.00020698	3.4025	0.0019201	3.0358	0.0017132	564.3260445460575	17.371	0.066673	17.371	17.323	17.39	0					4	2	2	0	0	0	0.70274	1	4344	4344		21.686	0	1	32698	+		43191	14600	28629	28744	43741	43741					0.0763708605179545
TLCGFVTVNE	10	Unmodified	_TLCGFVTVNE_					0	0	0			REV__nc|ENSG00000137103|A6NDV4-3|TMEM8B	REV__nc|ENSG00000137103|A6NDV4-3|TMEM8B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.51007080078125	3	361.511075	1081.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.881	1	18.881	18.381	19.381	0								0	0	0	0.29716	1	5736	5736		54.722	10.345	1		+		43192	14902	28630	28745	43742	43742					-0.026099133909610828
TLCLANAIE	9	Carbamidomethyl (C)	_TLC(Carbamidomethyl (C))LANAIE_	TLC(1)LANAIE		TLC(62)LANAIE		0	1	0			REV__nc|ENSG00000197757|P09630-2|HOXC6	REV__nc|ENSG00000197757|P09630-2|HOXC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7594299316406	2	502.757692	1003.50083	1.1583	0.00058232	1.8569	0.00093355	3.0151	0.0015159	502.7587823778463	18.362	0.31563	18.362	18.206	18.522	0					8	6	2	0	0	0	0.19605	1	5494	5494		62.107	16.155	1	1244200	+		43193	13808	28631	28746	43743	43743	523				-0.0007789604542267625
TLCPHPSTPTL	11	Unmodified	_TLCPHPSTPTL_					0	0	0			REV__ENST00000511220.1_1_5:92603163-92603583:+|nuORF	REV__ENST00000511220.1_1_5:92603163-92603583:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.7988891601562	2	583.797349	1165.58014	1.6	0.00093405	-0.34046	-0.00019876	1.2595	0.00073529	583.7970636276812	43.038	0.32031	43.038	42.839	43.159	0					11	9	2	0	0	0	0.56817	1	17143	17143		39.253	5.3312	1	63446	+		43194	19873	28632	28747	43744	43744					0.003977509087235376
TLCPNGRQET	10	Unmodified	_TLCPNGRQET_					0	0	0		ENST00000565167.1_1_15:41809585-41809717:-|nuORF	ENST00000565167.1_1_15:41809585-41809717:-|nuORF	ENST00000565167.1_1_15:41809585-41809717:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.5135803222656	3	373.513479	1117.51861	0.82921	0.00030972	-0.32433	-0.00012114	0.50487	0.00018858	373.51333141418036	30.162	0.37399	30.162	30.042	30.416	0					17	8	3	0	0	0	0.64162	1	11248	11248		27.644	0	1	553900			43195	10748	28633	28748	43745	43745					-0.035451807905246824
TLCTEEVFPT	10	Unmodified	_TLCTEEVFPT_					0	0	0		nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.2677001953125	2	570.26809	1138.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.493	1	15.493	14.993	15.993	0								0	0	0	0.4201	1	3543	3543		10.265	0	1				43196	1118	28634	28749	43746	43746					-0.04209350456426364
TLEAAQGLL	9	Unmodified	_TLEAAQGLL_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2606506347656	2	458.260925	914.507297	-0.6794	-0.00031134	-0.1693	-7.7584E-05	-0.8487	-0.00038892	458.2607142546057	31.937	0.30085	31.937	31.78	32.081	0					9	6	2	0	0	0	0.30951	1	12102	12102		49.442	2.6751	1	166070			43197	7739	28635	28750	43747	43747					0.04662365177614447
TLEEDAEVAR	10	Unmodified	_TLEEDAEVAR_					0	0	0			REV__ENSG00000145391|ENST00000274031|SETD7	REV__ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.7783203125	2	566.777667	1131.54078	1.6854	0.00095526	-0.5732	-0.00032488	1.1122	0.00063038	566.7773751871812	40.256	0.76161	40.256	39.867	40.629	0					40	17	3	0	0	0	0.49411	1	15891	15891		45.972	1.8554	1	190650	+		43198	15272	28636	28751	43748	43748					-0.019726778411495616
TLEFSAFDM	9	Oxidation (M)	_TLEFSAFDM(Oxidation (M))_		TLEFSAFDM(1)		TLEFSAFDM(56)	0	0	1		nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7;nc|ENSG00000197548|O95352-3|ATG7	nc|ENSG00000197548|O95352-2|ATG7	nc|ENSG00000197548|O95352-2|ATG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.736083984375	2	538.733883	1075.45321	3.3951	0.0018291	0.76804	0.00041377	4.1631	0.0022428	538.7342857912092	28.083	0.41694	28.083	27.926	28.343	0					20	8	3	0	0	0	0.25109	1	10122	10122		55.504	11.387	1	1571700			43199	7470	28637	28752	43749	43749		301			-0.08149595036252322
TLEPLART	8	Unmodified	_TLEPLART_					0	0	0			REV__ENSG00000173801|ENST00000393931|JUP	REV__ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7610168457031	2	450.761092	899.507631	0.1941	8.7492E-05	-0.8008	-0.00036097	-0.60671	-0.00027348	450.7608233807563	22.315	0.10539	22.315	22.265	22.371	0					4	2	2	0	0	0	0.68432	1	7242	7242		35.618	0	1	36736	+		43200	16532	28638	28753	43750	43750					0.053857848974644185
TLFFANLID	9	Unmodified	_TLFFANLID_					0	0	0			REV__tr|U7STX1|U7STX1_FUSNUUracil-DNAglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ungPE=3SV=1	REV__tr|U7STX1|U7STX1_FUSNUUracil-DNAglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ungPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2854614257812	2	527.2844	1052.55425	1.6281	0.00085845	-0.17091	-9.0117E-05	1.4571	0.00076833	527.2845805829583	42.625	0.24087	42.625	42.545	42.786	0					11	6	2	0	0	0	0.33044	1	17070	17070		47.657	1.7054	1	89150	+		43201	21944	28639	28754	43751	43751					0.030072247287534992
TLFGGFYV	8	Unmodified	_TLFGGFYV_					0	0	0			REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2331848144531	2	452.234179	902.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.34	1	25.34	24.84	25.84	0								0	0	0	1.7419	1	7873	7873		29.842	4.3914	1		+		43202	22092	28640	28755	43752	43752					-0.0013238753424502647
TLFGRDLL	8	Unmodified	_TLFGRDLL_					0	0	0		ENST00000513428.5_1_4:122602814-122617744:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7713928222656	2	467.77146	933.528367	0.33441	0.00015643	-0.64955	-0.00030384	-0.31514	-0.00014741	467.77123503909513	33.468	0.45033	33.468	33.22	33.67	0					35	11	4	0	0	0	0.64144	1	12298	12298		42.396	0	1	480380			43203	5656	28641	28756	43753	43753					0.058943752771256186
TLFLWSIK	8	Unmodified	_TLFLWSIK_					0	0	0			REV__ENSG00000111181|ENST00000684302|SLC6A12	REV__ENSG00000111181|ENST00000684302|SLC6A12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2976989746094	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.023	1	22.023	21.523	22.523	0								0	0	0	1.7419	1	6489	6489		31.955	0	1		+		43204	13955	28642	28757	43754	43754					0.08212422833673827
TLFNEVAFLG	10	Unmodified	_TLFNEVAFLG_					0	0	0			REV__sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	REV__sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	370.86676025390625	3	370.865847	1109.57571	0.49041	0.00018188	2.4706	0.00091625	2.961	0.0010981	370.86658998087864	25.873	0.24334	25.873	25.744	25.988	0					7	4	2	0	0	0	0.61187	1	7807	7807		30.569	0	1	291880	+		43205	21560	28643	28758	43755	43755					0.025306097574684827
TLFVLIAVV	9	Unmodified	_TLFVLIAVV_					0	0	0			REV__ENSG00000138172|ENST00000260743|CALHM2	REV__ENSG00000138172|ENST00000260743|CALHM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.815673828125	2	487.817879	973.621205	-2.9104	-0.0014197	-1.5325	-0.00074756	-4.4429	-0.0021673	487.81714768412945	25.121	0.22286	25.121	25.029	25.252	0					11	5	3	0	0	0	0.32741	1	7948	7948		47.916	14.4	1	355350	+		43206	14962	28644	28759	43756	43756					0.13333880010520716
TLGDLDTVAG	10	Unmodified	_TLGDLDTVAG_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7895202636719	2	481.245472	960.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.323	1	23.323	22.823	23.823	0								0	0	0	0.3428	1	6992	6992		44.117	1.7207	1				43207	6701	28645	28760	43757	43757					-0.005428329272831434
TLGESQKQM	9	Oxidation (M)	_TLGESQKQM(Oxidation (M))_		TLGESQKQM(1)		TLGESQKQM(77)	0	0	1			REV__ENST00000563143.2_1_16:32882346-32883351:+|nuORF	REV__ENST00000563143.2_1_16:32882346-32883351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.25244140625	2	519.250231	1036.48591	3.3571	0.0017432	0.67481	0.0003504	4.0319	0.0020936	519.2506772263799	36.504	0.36569	36.504	36.395	36.761	0					18	7	4	0	0	0	0.10915	1	14205	14205		77.318	13.11	1	892430	+		43208	20315	28646	28761	43758	43758		733			-0.03087387913387829
TLGESQKQM	9	Unmodified	_TLGESQKQM_					0	0	0			REV__ENST00000563143.2_1_16:32882346-32883351:+|nuORF	REV__ENST00000563143.2_1_16:32882346-32883351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2548828125	2	511.252774	1020.491	3.0893	0.0015794	0.78541	0.00040154	3.8747	0.0019809	511.2533905212248	44.189	0.3911	44.189	44.115	44.506	0					49	16	5	0	0	0	0.21419	1	17699	17699		52.937	0	1	1203800	+		43209	20315	28646	28762	43759	43759					-0.01843084050778998
TLGHLGDI	8	Unmodified	_TLGHLGDI_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2266845703125	2	413.226885	824.439217	-2.3176	-0.00095771	1.9908	0.00082266	-0.32683	-0.00013505	413.2277124107655	23.718	0.15784	23.718	23.589	23.747	0					7	4	2	0	0	0	0.7126	1	7285	7285		31.955	6.5047	1	196190			43210	6319	28647	28763	43760	43760					0.019975403176204054
TLGIESLFQ	9	Unmodified	_TLGIESLFQ_					0	0	0			REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.27142333984375	2	504.274032	1006.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.988	1	34.988	34.488	35.488	0								0	0	0	0.29774	1	13083	13083		35.618	2.1027	1		+		43211	22135	28648	28764	43761	43761					0.03050634349096981
TLGPCPQVDPG	11	Unmodified	_TLGPCPQVDPG_					0	0	0		ENST00000514938.1_1_22:50943492-50943879:-|nuORF	ENST00000514938.1_1_22:50943492-50943879:-|nuORF	ENST00000514938.1_1_22:50943492-50943879:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2625732421875	2	542.260599	1082.50665	2.0397	0.001106	1.0956	0.00059412	3.1353	0.0017002	542.2615335721014	14.638	0.35473	14.638	14.539	14.893	0					15	7	4	0	0	0	0.058097	1	3826	3826		101.25	8.1094	1	5104300			43212	10260	28649	28765	43762	43762					-0.03130797533754048
TLGPSVDPEIP	11	Unmodified	_TLGPSVDPEIP_					0	0	0		DNAJC14|p.G80Vfs*176|1|0.17|ENSG00000135392|chr12:55828420-55828420|C/-|frameshift_variant;ENSG00000135392|ENST00000678005|DNAJC14	DNAJC14|p.G80Vfs*176|1|0.17|ENSG00000135392|chr12:55828420-55828420|C/-|frameshift_variant	DNAJC14|p.G80Vfs*176|1|0.17|ENSG00000135392|chr12:55828420-55828420|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.7979125976562	2	562.795329	1123.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.221	1	35.221	34.721	35.721	0								0	0	0	0.33214	1	11544	11544		47.657	3.2801	1				43213	828	28650	28766	43763	43763					0.019259846866816588
TLGPVTLRP	9	Unmodified	_TLGPVTLRP_					0	0	0		ENST00000509460.2_1_22:25853295-25915989:+|nuORF	ENST00000509460.2_1_22:25853295-25915989:+|nuORF	ENST00000509460.2_1_22:25853295-25915989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.79437255859375	2	477.292559	952.570566	0.0086937	4.1494E-06	0.21628	0.00010323	0.22497	0.00010738	477.2927596685822	30.504	0.83269	30.504	30.193	31.025	0					55	32	2	0	0	0	0.47038	1	9683	9683		35.618	0	1	248070			43214	10224	28651	28767	43764	43764					0.09238350685529895
TLGRVLLSGLQ	11	Unmodified	_TLGRVLLSGLQ_					0	0	0			REV__nc|ENSG00000112584|Q96EK7-3|FAM120B	REV__nc|ENSG00000112584|Q96EK7-3|FAM120B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.23773193359375	3	386.239796	1155.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.594	1	31.594	31.094	32.094	0								0	0	0	0.45674	1	10484	10484		21.78	0.74819	1		+		43215	14011	28652	28768	43765	43765					0.1259365183987029
TLGTASIAK	9	Unmodified	_TLGTASIAK_					0	0	0			REV__ENSG00000143107|ENST00000370017|FNDC7	REV__ENSG00000143107|ENST00000370017|FNDC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.25531005859375	2	431.255643	860.496732	-0.4668	-0.00020131	-0.18143	-7.8244E-05	-0.64824	-0.00027956	431.25558798594926	27.264	0.26997	27.264	27.103	27.373	0					12	5	3	0	0	0	0.35021	1	9753	9753		45.972	0	1	277650	+		43216	15167	28653	28769	43766	43766					0.06090382523200333
TLGVAPLQ	8	Unmodified	_TLGVAPLQ_					0	0	0			REV__nc|ENSG00000145194|P0DPD6-3|ECE2	REV__nc|ENSG00000145194|P0DPD6-3|ECE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.7381896972656	2	399.739628	797.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.138	1	44.138	43.638	44.638	0								0	0	0	1.7419	1	17685	17685		26.796	0	1		+		43217	15259	28654	28770	43767	43767					0.05787014840052507
TLGVPQLIN	9	Unmodified	_TLGVPQLIN_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.7845153808594	2	477.784567	953.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.443	1	26.443	25.943	26.943	0								0	0	0	0.38404	1	8515	8515		15.642	0.97771	1		+		43218	13165	28655	28771	43768	43768					0.07594644448613508
TLHAWIRY	8	Unmodified	_TLHAWIRY_					0	0	0		ENST00000351773.7_1_10:38384091-38384521:+|nuORF;ENST00000435805.6_1_10:43047060-43047381:-|nuORF	ENST00000351773.7_1_10:38384091-38384521:+|nuORF	ENST00000351773.7_1_10:38384091-38384521:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.290283203125	2	530.290351	1058.56615	2.3814	0.0012628	-2.8301	-0.0015008	-0.4487	-0.00023794	530.2886732701918	37.672	0.19913	37.672	37.599	37.798	0					8	6	2	0	0	0	0.65276	1	14308	14308		40.573	0.51445	1	92497			43219	8773	28656	28772	43769	43769					0.03920886262608292
TLHHKLKF	8	Unmodified	_TLHHKLKF_					0	0	0			REV__ENSG00000213588|ENST00000395064|ZBTB9	REV__ENSG00000213588|ENST00000395064|ZBTB9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.3084716796875	2	512.308544	1022.60253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.968	1	32.968	32.468	33.468	0								0	0	0	1.7419	1	12575	12575		40.573	0	1		+		43220	17563	28657	28773	43770	43770					0.09213763159323207
TLHIIMGG	8	Unmodified	_TLHIIMGG_					0	0	0		ENSG00000124467|ENST00000306511|PSG8;PSG8|p.Q383Kfs*27|1|0.34|ENSG00000124467|chr19:42754429-42754429|G/-|frameshift_variant;nc|ENSG00000124467|Q9UQ74-3|PSG8	ENSG00000124467|ENST00000306511|PSG8	ENSG00000124467|ENST00000306511|PSG8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.2337341308594	2	421.233656	840.452759	0.38051	0.00016028	0.38581	0.00016251	0.76632	0.0003228	421.2338119154432	46.052	0.1917	46.052	45.948	46.14	0					18	11	2	0	0	0	0.79293	1	17736	17736		15.636	5.4514	1	117170			43221	3375	28658	28774	43771	43771					0.026150748252121048
TLHSHKPPL	9	Unmodified	_TLHSHKPPL_					0	0	0		ENST00000573134.1_1_18:2539001-2552773:-|nuORF;ENSG00000101574|ENST00000574538|METTL4	ENST00000573134.1_1_18:2539001-2552773:-|nuORF	ENST00000573134.1_1_18:2539001-2552773:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2955322265625	2	515.295633	1028.57671	1.6496	0.00085004	-1.1166	-0.00057538	0.53302	0.00027466	515.2950644406963	26.021	0.26287	26.021	25.929	26.192	0					19	6	4	0	0	0	0.13519	1	8914	8914		71.296	2.5089	1	1140200			43222	2129	28659	28775	43772	43772					0.06356868917032443
TLIGWTKG	8	Unmodified	_TLIGWTKG_					0	0	0		nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	438.2528076171875	2	438.252903	874.491253	-0.96221	-0.00042169	0.75964	0.00033291	-0.20257	-8.8775E-05	438.2532125955083	29.929	0.29206	29.929	29.831	30.123	0					20	11	2	0	0	0	0.7126	1	9788	9788		31.955	0	1	304890			43223	5178	28660	28776	43773	43773					0.048987037313850124
TLIMGDFST	9	Unmodified	_TLIMGDFST_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|152|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|152|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|152|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.72760009765625	2	492.738968	983.463383	-0.74165	-0.00036544	-1.2034	-0.00059295	-1.945	-0.00095839	492.7381707331587	17.342	0.2495	17.342	17.234	17.483	0					10	5	3	0	0	0	0.57706	1	5125	5125		24.203	1.1603	1	611710			43224	11289	28661	28777	43774	43774					-0.02900987311022618
TLINGFTFA	9	Unmodified	_TLINGFTFA_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2635498046875	2	492.263468	982.512382	-0.58706	-0.00028899	0.61116	0.00030085	0.024103	1.1865E-05	492.26378166352254	40.461	0.16105	40.461	40.359	40.52	0					5	3	2	0	0	0	0.54267	1	16081	16081		27.882	1.0861	1	39993	+		43225	14948	28662	28778	43775	43775					0.02042669040235978
TLINLAQQ	8	Unmodified	_TLINLAQQ_					0	0	0			REV__ENSG00000005189|ENST00000261377|REXO5	REV__ENSG00000005189|ENST00000261377|REXO5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.7615051269531	2	450.761092	899.507631	-1.1876	-0.00053531	1.2913	0.00058206	0.10371	4.675E-05	450.76186097888416	26.02	0.13312	26.02	25.93	26.063	0					7	4	2	0	0	0	0.49216	1	8141	8141		60.972	2.19	1	53701	+		43226	12836	28663	28779	43776	43776					0.05385784897475787
TLIRVFAST	9	Unmodified	_TLIRVFAST_					0	0	0			REV__tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	REV__tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53411865234375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.241	1	47.241	46.741	47.741	0								0	0	0	0.37821	1	14487	14487		12.812	0	1		+		43227	21931	28664	28780	43777	43777					0.07810333339955378
TLKEKEKQ	8	Unmodified	_TLKEKEKQ_					0	0	0			REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.29266357421875	2	502.292756	1002.57096	-0.92276	-0.0004635	0.75959	0.00038153	-0.16317	-8.1961E-05	502.29309247835914	17.142	0.10155	17.142	17.077	17.179	0					6	3	2	0	0	0	0.26795	1	4248	4248		82.241	5.4664	1	164430	+		43228	12930	28665	28781	43778	43778					0.06977725614717656
TLKEQKSF	8	Unmodified	_TLKEQKSF_					0	0	0			REV__SLC25A23|p.E174K|1|0.35|ENSG00000125648|chr19:6454681-6454681|C/T|missense_variant	REV__SLC25A23|p.E174K|1|0.35|ENSG00000125648|chr19:6454681-6454681|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7737121582031	2	490.7742	979.533846	-0.053982	-2.6493E-05	-0.66975	-0.00032869	-0.72373	-0.00035519	490.77393678909044	27.789	0.13979	27.789	27.742	27.882	0					7	4	2	0	0	0	0.71588	1	8610	8610		31.53	3.4483	1	71689	+		43229	14437	28666	28782	43779	43779					0.04326054068951635
TLKFVHTSF	9	Unmodified	_TLKFVHTSF_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1;PGM2L1|p.S299Lfs*19|1|0.24|ENSG00000165434|chr11:74347192-74347192|A/-|frameshift_variant	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.534423828125	3	360.53432	1078.58113	-0.06726	-2.425E-05	0.25277	9.1133E-05	0.18551	6.6883E-05	360.5344240400598	29.706	0.56367	29.706	29.6	30.163	0					26	11	4	0	0	0	0.45358	1	10925	10925		36.447	0	1	866420			43230	5795	28667	28783	43780	43780					0.04498333339938654
TLKGDDTNLY	10	Unmodified	_TLKGDDTNLY_					0	0	0			REV__tr|U7SRJ7|U7SRJ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01629PE=4SV=1	REV__tr|U7SRJ7|U7SRJ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01629PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.2830810546875	2	570.282586	1138.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.705	1	43.705	43.205	44.205	0								0	0	0	0.37702	1	15110	15110		32.812	2.4947	1		+		43231	21854	28668	28784	43781	43781					-0.013114898357571292
TLKGLFRKI	9	Unmodified	_TLKGLFRKI_					0	0	0			REV__ENST00000409111.2_1_2:197184567-197194349:-|nuORF	REV__ENST00000409111.2_1_2:197184567-197194349:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.5718078613281	3	359.237726	1074.69135	-0.91277	-0.0003279	0.79223	0.0002846	-0.12054	-4.3302E-05	359.23803846291804	27.911	0.74115	27.911	27.643	28.384	0					49	26	3	0	0	0	0.56424	1	8871	8871		25.574	0	1	155510	+		43232	14976	28669	28785	43782	43782					0.15699178398972435
TLKLKGFSIE	10	Unmodified	_TLKLKGFSIE_					0	0	0			REV__nc|ENSG00000136535|Q16650-2|TBR1	REV__nc|ENSG00000136535|Q16650-2|TBR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.22906494140625	3	379.228897	1134.66486	0.19542	7.411E-05	0.34933	0.00013248	0.54475	0.00020659	379.2290919190862	25.491	0.73454	25.491	25.181	25.916	0					26	15	4	0	0	0	0.62149	1	8708	8708		31.634	0.10446	1	1295400	+		43233	14867	28670	28786	43783	43783					0.10291444716995102
TLKNADSTLIQ	11	Unmodified	_TLKNADSTLIQ_					0	0	0			REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	602.3330078125	2	602.33261	1202.65067	-0.29007	-0.00017472	0.88471	0.00053289	0.59464	0.00035817	602.3331351330506	31.626	0.26112	31.626	31.518	31.779	0					18	6	4	0	0	0	0.046871	1	11531	11531		106.68	2.6263	1	1050700	+		43234	12090	28671	28787	43784	43784					0.057447474980335755
TLKNRMGHQ	9	Unmodified	_TLKNRMGHQ_					0	0	0		ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000254206|ENST00000698511|NPIPB11;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000169246|Q92617|NPIPB3;nc|ENSG00000169246|Q92617-6|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-5|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;ENSG00000169246|ENST00000542817|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3;ENSG00000234719|ENST00000399147|NPIPB2;ENSG00000254852|ENST00000529166|NPIPA2;ENSG00000224712|ENST00000531598|NPIPA3;nc|ENSG00000254852|F8WFD2|NPIPA3;ENSG00000183889|ENST00000381497|NPIPA9;ENSG00000214940|ENST00000525596|NPIPA8;ENSG00000214967|ENST00000530217|NPIPA7;ENSG00000233024|ENST00000427999|NPIPA9;ENSG00000183426|ENST00000328085|NPIPA1;ENSG00000183793|ENST00000360151|NPIPA5	ENSG00000198064|ENST00000697092|NPIPB13	ENSG00000198064|ENST00000697092|NPIPB13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7872924804688	2	542.78765	1083.56075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.316	1	18.316	17.816	18.816	0								0	0	0	0.27025	1	4755	4755		40.778	14.085	1				43235	7526	28672	28788	43785	43785					0.02230839408503016
TLKPPNSSL	9	Unmodified	_TLKPPNSSL_					0	0	0			REV__SMARCA2|p.P1378S|1|0.36|ENSG00000080503|chr9:2161836-2161836|C/T|missense_variant	REV__SMARCA2|p.P1378S|1|0.36|ENSG00000080503|chr9:2161836-2161836|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.7738952636719	2	478.7742	955.533846	-0.31964	-0.00015304	-1.5137	-0.0007247	-1.8333	-0.00087774	478.7734360356452	21.728	0.16766	21.728	21.608	21.776	0					6	4	2	0	0	0	0.17854	1	6360	6360		64.207	4.089	1	177480	+		43236	21544	28673	28789	43786	43786					0.054300540689382615
TLKQLCAQA	9	Unmodified	_TLKQLCAQA_					0	0	0		ENST00000585004.5_1_18:688572-706535:-|nuORF;nc|ENSG00000132199|Q7L5Y1-6|ENOSF1;nc|ENSG00000132199|Q7L5Y1-2|ENOSF1;ENST00000578651.5_1_18:683014-712587:-|nuORF;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1	ENST00000585004.5_1_18:688572-706535:-|nuORF	ENST00000585004.5_1_18:688572-706535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.84674072265625	3	325.84791	974.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.321	1	22.321	21.821	22.821	0								0	0	0	0.31838	1	7538	7538		31.53	2.3803	1				43237	3767	28674	28790	43787	43787					0.033621140541072236
TLKQVLLVGA	10	Unmodified	_TLKQVLLVGA_					0	0	0		ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.3375854492188	2	521.336967	1040.65938	0.33773	0.00017607	0.82614	0.0004307	1.1639	0.00060677	521.3373144708063	33.075	0.20468	33.075	33.011	33.216	0					22	9	3	0	0	0	0.24256	1	11080	11080		74.255	3.4388	1	377880			43238	2730	28675	28791	43788	43788					0.14067765925187814
TLKTLREF	8	Unmodified	_TLKTLREF_					0	0	0		ENST00000254691.9_2_5:40853406-40853502:+|nuORF	ENST00000254691.9_2_5:40853406-40853502:+|nuORF	ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5344543457031	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.625	1	46.625	46.125	47.125	0								0	0	0	1.7419	1	15719	15719		14.865	3.9993	1				43239	8254	28676	28792	43789	43789					0.07810333339944009
TLLASPVQ	8	Unmodified	_TLLASPVQ_					0	0	0			REV__ENST00000588238.1_1_19:4445497-4445788:-|nuORF	REV__ENST00000588238.1_1_19:4445497-4445788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.7451171875	2	414.744911	827.475269	-0.065835	-2.7305E-05	0.017046	7.0699E-06	-0.048789	-2.0235E-05	414.74501342724017	32.242	0.22578	32.242	32.14	32.366	0					9	6	2	0	0	0	0.64144	1	11205	11205		42.396	3.59	1	47404	+		43240	20502	28677	28793	43790	43790					0.05462997494475985
TLLDPGEHY	9	Unmodified	_TLLDPGEHY_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7539672851562	2	522.753464	1043.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.343	1	35.343	34.843	35.843	0								0	0	0	0.28996	1	12584	12584		37.159	5.2042	1				43241	4679	28678	28794	43791	43791					-0.027631266903881624
TLLDTSKAVAI	11	Unmodified	_TLLDTSKAVAI_					0	0	0		ENSG00000239642|ENST00000442687|MEIKIN	ENSG00000239642|ENST00000442687|MEIKIN	ENSG00000239642|ENST00000442687|MEIKIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.33544921875	2	566.334621	1130.65469	1.6951	0.00095997	-0.75872	-0.00042969	0.93634	0.00053028	566.3340121670237	40.18	0.21578	40.18	40.092	40.308	0					14	5	3	0	0	0	0.20322	1	15945	15945		65.157	0	1	445760			43242	7922	28679	28795	43792	43792					0.0945883699175738
TLLEGDGPKTY	11	Unmodified	_TLLEGDGPKTY_					0	0	0		ENST00000406419.1_1_15:78633606-78640316:+|nuORF;ENSG00000166426|ENST00000299529|CRABP1	ENST00000406419.1_1_15:78633606-78640316:+|nuORF	ENST00000406419.1_1_15:78633606-78640316:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.3056030273438	2	597.306061	1192.59757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.983	1	34.983	34.483	35.483	0								0	0	0	0.4303	1	13080	13080		30.318	0	1				43243	5899	28680	28796	43793	43793					0.008973697154033289
TLLFPPVW	8	Unmodified	_TLLFPPVW_					0	0	0		ENST00000251241.8_1_17:57685310-57685481:+|nuORF	ENST00000251241.8_1_17:57685310-57685481:+|nuORF	ENST00000251241.8_1_17:57685310-57685481:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.8564453125	3	324.856623	971.54804	0.55763	0.00018115	-1.3783	-0.00044775	-0.82067	-0.0002666	324.856235650235	19.901	0.31915	19.901	19.642	19.961	0					17	6	4	0	0	0	0.55361	1	6354	6354		65.803	0	1	1079200			43244	8242	28681	28797	43794	43794					0.06112751287901119
TLLGISESHQ	10	Unmodified	_TLLGISESHQ_					0	0	0		MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.7848510742188	2	542.785296	1083.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.227	1	18.227	17.727	18.727	0								0	0	0	0.39665	1	4506	4506		31.53	9.5699	1				43245	7469	28682	28798	43795	43795					0.01760233746722406
TLLLGANAAG	10	Unmodified	_TLLLGANAAG_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7606506347656	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.018	1	26.018	25.518	26.518	0								0	0	0	0.33107	1	7856	7856		45.972	6.7194	1				43246	7849	28683	28799	43796	43796					0.053857848974644185
TLLPASIGG	9	Unmodified	_TLLPASIGG_					0	0	0		ENST00000463473.2_1_1:207087354-207095257:-|nuORF	ENST00000463473.2_1_1:207087354-207095257:-|nuORF	ENST00000463473.2_1_1:207087354-207095257:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.7443542480469	2	414.744911	827.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.294	1	32.294	31.794	32.794	0								0	0	0	0.28996	1	10767	10767		37.159	1.5408	1				43247	9759	28684	28800	43797	43797					0.05462997494487354
TLLPEKLHG	9	Unmodified	_TLLPEKLHG_					0	0	0			REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5346984863281	3	336.53432	1006.58113	0.24153	8.1285E-05	-0.51451	-0.00017315	-0.27298	-9.1866E-05	336.5341389799546	26.564	0.59578	26.564	26.154	26.75	0					35	19	2	0	0	0	0.61124	1	8121	8121		13.454	2.3573	1	128490	+		43248	12981	28685	28801	43798	43798					0.07810333339944009
TLLSNLEEAKK	11	Unmodified	_TLLSNLEEAKK_					0	0	0		ENST00000518050.1_1_8:27466361-27472184:-|nuORF;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	ENST00000518050.1_1_8:27466361-27472184:-|nuORF	ENST00000518050.1_1_8:27466361-27472184:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	623.35546875	2	623.356085	1244.69762	0.54585	0.00034026	-0.54408	-0.00033916	0.0017678	1.1019E-06	623.3558358341263	35.423	0.12305	35.423	35.334	35.457	0					5	3	2	0	0	0	0.46959	1	13272	13272		46.457	0	1	68422			43249	3198	28686	28802	43799	43799					0.08505607049187347
TLLSSLKQK	9	Unmodified	_TLLSSLKQK_					0	0	0		ENST00000584582.5_1_17:18210215-18218150:-|nuORF	ENST00000584582.5_1_17:18210215-18218150:-|nuORF	ENST00000584582.5_1_17:18210215-18218150:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.3191223144531	2	509.318774	1016.623	-0.40439	-0.00020596	1.0393	0.00052936	0.63496	0.0003234	509.31919089620226	19.65	0.11685	19.65	19.593	19.71	0					4	2	2	0	0	0	0.35021	1	6263	6263		45.972	0	1	272690			43250	10891	28687	28803	43800	43800					0.11534889028473572
TLLSVSCFLK	10	Carbamidomethyl (C)	_TLLSVSC(Carbamidomethyl (C))FLK_	TLLSVSC(1)FLK		TLLSVSC(41)FLK		0	1	0			REV__AMMECR1L|p.K259Nfs*9|1|0.08|ENSG00000144233|chr2:127866913-127866944|TCGTTTTTCTGAATTCACTGGTAATTGGAGCT/-|frameshift_variant	REV__AMMECR1L|p.K259Nfs*9|1|0.08|ENSG00000144233|chr2:127866913-127866944|TCGTTTTTCTGAATTCACTGGTAATTGGAGCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.8849182128906	3	389.886253	1166.63693	0.49588	0.00019334	-2.9008	-0.001131	-2.4049	-0.00093764	389.8846292383172	38.162	0.20674	38.162	38.111	38.317	0					10	4	3	0	0	0	0.536	1	14996	14996		41.427	7.505	1	159720	+		43251	12151	28688	28804	43801	43801	480				0.06027798465242995
TLLTPAAAA	9	Unmodified	_TLLTPAAAA_					0	0	0		ENST00000424946.1_1_12:105322435-105351963:-|nuORF;ENST00000432951.1_1_12:105325484-105351963:-|nuORF	ENST00000424946.1_1_12:105322435-105351963:-|nuORF	ENST00000424946.1_1_12:105322435-105351963:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.7447204589844	2	414.744911	827.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.029	1	33.029	32.529	33.529	0								0	0	0	0.23459	1	11064	11064		45.952	1.8352	1				43252	9425	28689	28805	43802	43802					0.054629974944646165
TLLTSRRRE	9	Unmodified	_TLLTSRRRE_					0	0	0		ENST00000397147.6_1_22:37257112-37260979:+|nuORF	ENST00000397147.6_1_22:37257112-37260979:+|nuORF	ENST00000397147.6_1_22:37257112-37260979:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.3350830078125	2	566.333279	1130.652	3.4708	0.0019657	-0.086917	-4.9224E-05	3.3839	0.0019164	566.3333606806207	40.195	0.21492	40.195	40.08	40.295	0					11	5	3	0	0	0	0.24169	1	15935	15935		67.494	67.494	1	370960			43253	9214	28690	28806	43803	43803					0.0919042637747225
TLLVWTLSK	9	Unmodified	_TLLVWTLSK_					0	0	0		ENST00000555652.5_1_14:71880716-71996066:+|nuORF;ENST00000554362.5_1_14:71867533-71996066:+|nuORF	ENST00000555652.5_1_14:71880716-71996066:+|nuORF	ENST00000555652.5_1_14:71880716-71996066:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.8248291015625	2	530.823692	1059.63283	1.6637	0.00088311	0.073101	3.8804E-05	1.7368	0.00092192	530.8237494909313	49.08	0.20765	49.08	49.025	49.233	0					22	12	2	0	0	0	0.04067	1	19445	19445		98.582	43.806	1	169430			43254	10645	28691	28807	43804	43804					0.10540077033851958
TLMKISRSL	9	Unmodified	_TLMKISRSL_					0	0	0		ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8119506835938	2	524.812802	1047.61105	1.4201	0.0007453	-3.1604	-0.0016586	-1.7402	-0.0009133	524.8113659537048	27.334	0.19365	27.334	27.249	27.443	0					12	7	2	0	0	0	0.54267	1	8406	8406		27.882	1.1893	1	77130			43255	10299	28692	28808	43805	43805					0.08914949013615114
TLMLLAGVTL	10	Unmodified	_TLMLLAGVTL_					0	0	0			REV__ENST00000531001.1_1_11:125478078-125479612:+|nuORF	REV__ENST00000531001.1_1_11:125478078-125479612:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.8108520507812	2	516.312103	1030.60965	3.2785	0.0016927	1.7417	0.00089929	5.0203	0.002592	516.3127620627187	42.283	0.34758	42.283	42.198	42.545	0					12	9	2	0	0	0	0.2978	1	16893	16893		67.494	22.963	1	362320	+		43256	14772	28693	28809	43806	43806					0.09557314924882121
TLMLQAQP	8	Unmodified	_TLMLQAQP_					0	0	0			REV__ENST00000530982.7_1_19:42603618-42636563:-|nuORF	REV__ENST00000530982.7_1_19:42603618-42636563:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.24462890625	2	451.244221	900.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.145	1	47.145	46.645	47.645	0								0	0	0	1.7419	1	18838	18838		33.516	0.70317	1		+		43257	12961	28694	28810	43807	43807					0.019670401340590615
TLNHFEAI	8	Unmodified	_TLNHFEAI_					0	0	0		tr|U7SSR5|U7SSR5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01545PE=4SV=1	tr|U7SSR5|U7SSR5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01545PE=4SV=1	tr|U7SSR5|U7SSR5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01545PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.74273681640625	2	472.745442	943.476331	-1.4913	-0.00070502	-3.0515	-0.0014426	-4.5429	-0.0021476	472.74349461881934	21.168	0.16859	21.168	21.065	21.233	0					8	5	2	0	0	0	0.70598	1	6054	6054		32.812	2.3088	1	41021			43258	22751	28695	28811	43808	43808					0.002332118633717073
TLNKSLSIFI	10	Unmodified	_TLNKSLSIFI_					0	0	0			REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.2291259765625	3	379.228897	1134.66486	-1.1124	-0.00042184	0.92251	0.00034984	-0.18986	-7.2E-05	379.2291919586687	25.287	0.26709	25.287	25.189	25.456	0					13	9	2	0	0	0	0.536	1	7842	7842		41.427	1.3684	1	192030	+		43259	17935	28696	28812	43809	43809					0.10291444716995102
TLNYDARL	8	Unmodified	_TLNYDARL_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.25323486328125	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.459	1	15.459	14.959	15.959	0								0	0	0	1.7419	1	3474	3474		20.482	1.1219	1		+		43260	17481	28697	28813	43810	43810					0.01412596892100737
TLPDCSHELV	10	Unmodified	_TLPDCSHELV_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.7645874023438	2	557.265881	1112.51721	0.11831	6.593E-05	-3.8832	-0.002164	-3.7649	-0.002098	557.2645670865357	27.41	0.20441	27.41	27.296	27.501	0					17	7	3	0	0	0	0.65213	1	8705	8705		27.882	5.3207	1	97936	+		43261	13552	28698	28814	43811	43811					-0.034548148793419386
TLPLRLLLH	9	Unmodified	_TLPLRLLLH_					0	0	0			REV__nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	REV__nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.2376708984375	3	359.237726	1074.69135	0.44748	0.00016075	-0.51322	-0.00018437	-0.065733	-2.3614E-05	359.23757459235424	27.755	0.38479	27.755	27.614	27.998	0					21	12	2	0	0	0	0.61124	1	8588	8588		19.997	0	1	108160	+		43262	17445	28699	28815	43812	43812					0.15699178398972435
TLPPDAYSHL	10	Unmodified	_TLPPDAYSHL_					0	0	0		ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	371.8559875488281	3	371.857351	1112.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.227	1	14.227	13.727	14.727	0								0	0	0	0.38879	1	3492	3492		33.922	7.8582	1				43263	7776	28700	28816	43813	43813					-0.0015486476497699186
TLPPPQFEGAL	11	Unmodified	_TLPPPQFEGAL_					0	0	0			REV__nc|ENSG00000198408|O60502-2|OGA	REV__nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.3131713867188	2	585.313689	1168.61282	-1.7282	-0.0010115	-1.4303	-0.00083717	-3.1585	-0.0018487	585.3130595743584	34.042	0.61799	34.042	33.702	34.32	0					35	18	2	0	0	0	0.63398	1	12057	12057		33.922	6.0394	1	154730	+		43264	21186	28701	28817	43814	43814					0.03526281303243195
TLPPRSPQ	8	Unmodified	_TLPPRSPQ_					0	0	0			REV__ENST00000586443.1_1_17:42429890-42430163:+|nuORF	REV__ENST00000586443.1_1_17:42429890-42430163:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2533874511719	2	448.253434	894.492316	2.5549	0.0011452	-2.6649	-0.0011945	-0.10996	-4.9289E-05	448.2522183099891	17.013	0.21372	17.013	16.859	17.073	0					9	4	3	0	0	0	0.35045	1	4843	4843		76.774	15.802	1	421320	+		43265	20483	28702	28818	43815	43815					0.04084918100284085
TLQGEHQHLP	10	Unmodified	_TLQGEHQHLP_					0	0	0		MTHFSD|p.P294Lfs*26|1|0.15|ENSG00000103248|chr16:86532282-86532282|G/-|frameshift_variant;nc|ENSG00000103248|Q2M296-4|MTHFSD;nc|ENSG00000103248|Q2M296-2|MTHFSD;nc|ENSG00000103248|Q2M296-3|MTHFSD;ENSG00000103248|ENST00000360900|MTHFSD	MTHFSD|p.P294Lfs*26|1|0.15|ENSG00000103248|chr16:86532282-86532282|G/-|frameshift_variant	MTHFSD|p.P294Lfs*26|1|0.15|ENSG00000103248|chr16:86532282-86532282|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.19976806640625	3	387.2	1158.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.448	1	18.448	17.948	18.948	0								0	0	0	0.4201	1	4815	4815		23.523	0	1				43266	2226	28703	28819	43816	43816					0.005224582151413415
TLQIAFVEG	9	Unmodified	_TLQIAFVEG_					0	0	0			REV__ENSG00000105376|ENST00000221980|ICAM5	REV__ENSG00000105376|ENST00000221980|ICAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.27056884765625	2	489.26875	976.522947	2.6196	0.0012817	0.43855	0.00021457	3.0581	0.0014963	489.26898855210226	35.253	0.71943	35.253	35.097	35.817	0					25	14	2	0	0	0	0.40353	1	13584	13584		34.173	0	1	2030300	+		43267	13772	28704	28820	43817	43817					0.03374651694673503
TLQKEAVL	8	Unmodified	_TLQKEAVL_					0	0	0			REV__ENST00000599493.1_1_18:34647308-34664196:+|nuORF	REV__ENST00000599493.1_1_18:34647308-34664196:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7688903808594	2	451.271293	900.528032	-1.19	-0.00053701	0.17248	7.7834E-05	-1.0175	-0.00045917	451.2715529050656	32.466	0.40679	32.466	32.365	32.772	0					29	16	2	0	0	0	0.6088	1	10806	10806		47.657	3.5405	1	373530	+		43268	20521	28705	28821	43818	43818					0.07378955557271638
TLQNVLRK	8	Unmodified	_TLQNVLRK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.30255126953125	2	486.303458	970.592364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.003	1	26.003	25.503	26.503	0								0	0	0	1.7419	1	8916	8916		110.12	13.929	1				43269	2528	28706	28822	43819	43819					0.10589155434081476
TLQPFSFK	8	Unmodified	_TLQPFSFK_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2672119140625	2	484.26601	966.517468	0.62683	0.00030355	0.75932	0.00036771	1.3862	0.00067127	484.266524512983	38.336	0.45956	38.336	38.211	38.671	0					37	17	3	0	0	0	0.63077	1	14555	14555		44.117	5.3107	1	525600			43270	5030	28707	28823	43820	43820					0.03286972902856178
TLQYIKNYL	9	Unmodified	_TLQYIKNYL_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	385.8850402832031	3	385.88513	1154.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.771	1	28.771	28.271	29.271	0								0	0	0	0.21054	1	10581	10581		49.442	17.807	1		+		43271	14242	28708	28824	43821	43821					0.06242871682911755
TLRAGSSLKG	10	Unmodified	_TLRAGSSLKG_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	330.530517578125	3	330.529458	988.566543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.672	1	18.672	18.172	19.172	0								0	0	0	0.4201	1	4919	4919		10.587	0	1		+		43272	15683	28709	28825	43822	43822					0.07180261191820136
TLRDFNIGI	9	Unmodified	_TLRDFNIGI_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.793212890625	2	524.792924	1047.57129	0.10716	5.6236E-05	1.3493	0.0007081	1.4565	0.00076433	524.7935972474077	26.401	0.26066	26.401	26.249	26.509	0					8	5	2	0	0	0	0.39215	1	9460	9460		42.396	1.618	1	103120	+		43273	13572	28710	28826	43823	43823					0.049411453345555856
TLRKVLFAK	9	Unmodified	_TLRKVLFAK_					0	0	0			REV__MBTD1|p.W255C|1|0.38|ENSG00000011258|chr17:51203203-51203203|C/A|missense_variant	REV__MBTD1|p.W255C|1|0.38|ENSG00000011258|chr17:51203203-51203203|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.57220458984375	3	359.237726	1074.69135	-0.092682	-3.3295E-05	-0.11342	-4.0744E-05	-0.2061	-7.4039E-05	359.23757882684487	27.838	0.50945	27.838	27.701	28.21	0					19	12	2	0	0	0	0.4966	1	9153	9153		32.812	1.2826	1	176700	+		43274	12902	28711	28827	43824	43824					0.15699178398972435
TLRSITSPLV	10	Unmodified	_TLRSITSPLV_					0	0	0		nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	nc|ENSG00000142731|O00444-3|PLK4	nc|ENSG00000142731|O00444-3|PLK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8302612304688	2	543.829506	1085.64446	0.38029	0.00020681	0.3207	0.00017441	0.70099	0.00038122	543.8296962952644	18.153	0.18267	18.153	18.026	18.209	0					10	6	2	0	0	0	0.49411	1	4702	4702		45.972	3.108	1	123350			43275	4509	28712	28828	43825	43825					0.10506274057183873
TLRTFSLVL	9	Unmodified	_TLRTFSLVL_					0	0	0		nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1;DYNC2LI1|p.I230Yfs*38|1|0.29|ENSG00000138036|chr2:43800870-43800870|A/-|frameshift_variant;nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.549560546875	3	350.54997	1048.62808	0.32864	0.0001152	-1.0976	-0.00038475	-0.76893	-0.00026955	350.54949137193364	30.326	0.20288	30.326	30.277	30.479	0					7	4	2	0	0	0	0.5654	1	11333	11333		19.104	0	1	238570			43276	862	28713	28829	43826	43826					0.10571192891075043
TLSKSDAK	8	Unmodified	_TLSKSDAK_					0	0	0		nc|ENSG00000177830|Q9BWS9-3|CHID1;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1;CHID1|p.A30T|1|0.11|ENSG00000177830|chr11:904729-904729|C/T|missense_variant;ENST00000526714.5_1_11:870485-904855:-|nuORF	nc|ENSG00000177830|Q9BWS9-3|CHID1	nc|ENSG00000177830|Q9BWS9-3|CHID1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.23760986328125	2	425.23745	848.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.589	1	12.589	12.089	13.089	0								0	0	0	1.7419	1	2870	2870		47.657	5.2612	1				43277	6688	28714	28830	43827	43827					0.030055056264700397
TLSLALSL	8	Unmodified	_TLSLALSL_					0	0	0		ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.25543212890625	2	409.255111	816.49567	0.995	0.00040721	-0.44355	-0.00018152	0.55145	0.00022568	409.25484830042444	48.036	0.2954	48.036	47.936	48.231	0					30	18	2	0	0	0	0.41952	1	17527	17527		68.485	8.1907	1	197280			43278	10190	28715	28831	43828	43828					0.08008168154299256
TLSLFTVSIN	10	Unmodified	_TLSLFTVSIN_					0	0	0			REV__nc|ENSG00000119402|Q9UKT8-2|FBXW2	REV__nc|ENSG00000119402|Q9UKT8-2|FBXW2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.8060302734375	2	547.808239	1093.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.205	1	26.205	25.705	26.705	0								0	0	0	0.28704	1	9011	9011		52.937	5.2794	1		+		43279	14240	28716	28832	43829	43829					0.058868789289590495
TLSMVEIY	8	Unmodified	_TLSMVEIY_					0	0	0		nc|ENSG00000167702|Q96AC6|KIFC2;ENSG00000167702|ENST00000645548|KIFC2;ENST00000531423.1_1_8:145696018-145698106:+|nuORF	nc|ENSG00000167702|Q96AC6|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.24554443359375	2	478.243886	954.47322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.396	1	18.396	17.896	18.896	0								0	0	0	1.7419	1	5639	5639		20.482	1.1219	1				43280	11632	28717	28833	43830	43830					-0.005837993056388768
TLSPDEDGVC	10	Unmodified	_TLSPDEDGVC_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7198486328125	2	518.218597	1034.42264	-0.3796	-0.00019671	-0.9345	-0.00048427	-1.3141	-0.00068099	518.7199543050745	11.98	0.77531	11.98	11.813	12.588	0					56	20	4	0	0	0	0.70877	1	2590	2590		20.947	0.95016	1	1794000			43281	2469	28718	28834	43831	43831					-0.09319373421294586
TLSPQERPP	9	Unmodified	_TLSPQERPP_					0	0	0		ENST00000575894.1_1_16:697728-698187:+|nuORF	ENST00000575894.1_1_16:697728-698187:+|nuORF	ENST00000575894.1_1_16:697728-698187:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7748413085938	2	512.774731	1023.53491	-1.6886	-0.00086589	3.4974	0.0017934	1.8088	0.0009275	512.775905515501	23.932	0.13044	23.932	23.828	23.958	0					5	3	2	0	0	0	0.47473	1	7385	7385		27.882	11.409	1	81106			43282	10826	28719	28835	43832	43832					0.02408268437852712
TLSREDVI	8	Unmodified	_TLSREDVI_					0	0	0			REV__ENST00000520632.5_1_8:96048695-96056782:+|nuORF	REV__ENST00000520632.5_1_8:96048695-96056782:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.28265380859375	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.452	1	42.452	41.952	42.952	0								0	0	0	1.7419	1	16660	16660		51.335	8.9393	1		+		43283	19930	28720	28836	43833	43833					0.028971771722467565
TLSSTKAK	8	Unmodified	_TLSSTKAK_					0	0	0		ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	418.2465515136719	2	418.247818	834.481082	0.38602	0.00016145	-3.4527	-0.0014441	-3.0667	-0.0012826	418.2459708713644	22.886	0.36727	22.886	22.677	23.044	0					11	7	2	0	0	0	0.79882	1	7823	7823		19.36	1.0356	1	111030			43284	6217	28721	28837	43834	43834					0.057220960061385995
TLSTPLGK	8	Unmodified	_TLSTPLGK_					0	0	0			REV__ENST00000226004.7_1_17:41847131-41852211:-|nuORF	REV__ENST00000226004.7_1_17:41847131-41852211:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.7456970214844	2	408.744911	815.475269	1.1556	0.00047233	1.2935	0.00052871	2.4491	0.001001	408.745393469818	40.559	0.10395	40.559	40.519	40.623	0					7	4	2	0	0	0	0.79719	1	16006	16006		18.324	0	1	38270	+		43285	17900	28722	28838	43835	43835					0.06014997494492036
TLSTRWPL	8	Unmodified	_TLSTRWPL_					0	0	0		ENST00000532535.5_1_11:3819166-3845134:+|nuORF	ENST00000532535.5_1_11:3819166-3845134:+|nuORF	ENST00000532535.5_1_11:3819166-3845134:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	325.1870422363281	3	325.187032	972.539266	0.5571	0.00018116	-1.2355	-0.00040176	-0.67837	-0.0002206	325.1865967871457	28.316	0.50463	28.316	28.207	28.712	0					14	10	2	0	0	0	0.52345	1	10366	10366		57.811	4.4598	1	374120			43286	10451	28723	28839	43836	43836					0.0518977765142381
TLSTVGARFP	10	Unmodified	_TLSTVGARFP_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7935180664062	2	524.792924	1047.57129	-1.2555	-0.00065885	1.8499	0.00097084	0.59449	0.00031198	524.7937739017713	26.158	0.3993	26.158	25.984	26.383	0					16	9	2	0	0	0	0.55603	1	8373	8373		39.253	7.298	1	302010			43287	3168	28724	28840	43837	43837					0.049411453345555856
TLSVAATVL	9	Unmodified	_TLSVAATVL_					0	0	0			REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7662658691406	2	437.765843	873.517133	-0.62215	-0.00027236	0.74938	0.00032805	0.12723	5.5697E-05	437.7661601871508	35.118	0.14074	35.118	35.025	35.165	0					6	4	2	0	0	0	0.45358	1	12482	12482		37.159	1.5408	1	58261	+		43288	15870	28725	28841	43838	43838					0.07531553182980133
TLSVVSASLA	10	Unmodified	_TLSVVSASLA_					0	0	0		INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2737731933594	2	474.274032	946.533512	-0.12096	-5.737E-05	-1.3916	-0.00066	-1.5126	-0.00071737	474.2736004560647	32.574	0.17022	32.574	32.531	32.701	0					5	4	2	0	0	0	0.34667	1	12403	12403		62.107	12.571	1	38946			43289	7062	28726	28842	43839	43839					0.05810634349097654
TLSVWFISW	9	Unmodified	_TLSVWFISW_					0	0	0			REV__ENST00000355947.6_1_7:99489545-99489743:-|nuORF	REV__ENST00000355947.6_1_7:99489545-99489743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.7981567382812	2	569.800217	1137.58588	0.10261	5.8468E-05	-3.6693	-0.0020908	-3.5667	-0.0020323	569.7980595001065	33.752	0.14076	33.752	33.673	33.814	0					8	5	2	0	0	0	0.43426	1	11353	11353		38.806	9.6566	1	74600	+		43290	18515	28727	28843	43840	43840					0.022592174826968403
TLTFFLLCL	9	Unmodified	_TLTFFLLCL_					0	0	0		ENST00000392455.7_2_3:191109610-191109739:+|nuORF	ENST00000392455.7_2_3:191109610-191109739:+|nuORF	ENST00000392455.7_2_3:191109610-191109739:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.536376953125	3	357.536673	1069.58819	-2.0253	-0.00072414	1.5804	0.00056506	-0.44494	-0.00015908	357.53703286526553	26.039	0.18843	26.039	25.933	26.121	0					6	4	2	0	0	0	0.47428	1	8333	8333		34.173	0	1	53760			43291	9145	28728	28844	43841	43841					0.056179298961751556
TLTIQNVL	8	Unmodified	_TLTIQNVL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2708435058594	2	451.271293	900.528032	-0.31474	-0.00014203	-0.99166	-0.00044751	-1.3064	-0.00058954	451.270981864466	32.617	0.24814	32.617	32.508	32.757	0					16	10	2	0	0	0	0.66372	1	10544	10544		38.806	6.8513	1	83214			43292	5134;11594	28729	28845	43842	43842					0.07378955557271638
TLTIRCCCC	9	Unmodified	_TLTIRCCCC_					0	0	0		IGSF5|p.R292H|1|0.31|ENSG00000183067|chr21:39779246-39779246|G/A|missense_variant;ENSG00000183067|ENST00000380588|IGSF5	IGSF5|p.R292H|1|0.31|ENSG00000183067|chr21:39779246-39779246|G/A|missense_variant	IGSF5|p.R292H|1|0.31|ENSG00000183067|chr21:39779246-39779246|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.21343994140625	2	508.213226	1014.4119	-0.58539	-0.0002975	1.9243	0.00097794	1.3389	0.00068043	508.2141890555126	18.71	0.14942	18.71	18.653	18.802	0					8	5	2	0	0	0	0.54267	1	4942	4942		27.882	1.1893	1	98025			43293	6940	28730	28846	43843	43843					-0.09473093872600202
TLTLFLMTI	9	Unmodified	_TLTLFLMTI_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.8099975585938	2	526.806654	1051.59875	5.2699	0.0027762	0.97387	0.00051304	6.2438	0.0032893	526.8070922537428	24.565	0.10418	24.565	24.504	24.608	0					5	3	2	0	0	0	0.41113	1	7533	7533		25.45	0	1	68433			43294	7202	28731	28847	43844	43844					0.07501912550605994
TLTLYYESE	9	Unmodified	_TLTLYYESE_					0	0	0			REV__tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	REV__tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.5137023925781	3	373.51325	1117.51792	0.75338	0.0002814	0.71782	0.00026811	1.4712	0.00054951	373.51349059322024	30.091	0.3625	30.091	29.98	30.342	0					18	7	4	0	0	0	0.37197	1	11111	11111		42.864	3.6114	1	998630	+		43295	22029	28732	28848	43845	43845					-0.0361369695860958
TLVAAFRTR	9	Unmodified	_TLVAAFRTR_					0	0	0		ENST00000311637.9_2_20:50216404-50216899:-|nuORF	ENST00000311637.9_2_20:50216404-50216899:-|nuORF	ENST00000311637.9_2_20:50216404-50216899:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.8084106445312	2	517.808908	1033.60326	0.048838	2.5289E-05	-0.84889	-0.00043957	-0.80006	-0.00041428	517.8083465407854	39.44	0.30116	39.44	39.365	39.666	0					21	10	3	0	0	0	0.54267	1	15018	15018		27.882	1.1893	1	358590			43296	8559	28733	28849	43846	43846					0.08780557808358935
TLVEERTQ	8	Unmodified	_TLVEERTQ_					0	0	0			REV__ENSG00000197980|ENST00000356539|LEKR1	REV__ENSG00000197980|ENST00000356539|LEKR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.25860595703125	2	488.258914	974.503274	0.75124	0.0003668	-1.1401	-0.00055666	-0.38885	-0.00018986	488.2582507397394	18.591	0.13907	18.591	18.516	18.655	0					7	3	3	0	0	0	0.68432	1	5486	5486		35.618	5.1146	1	259930	+		43297	17374	28734	28850	43847	43847					0.01500275683918062
TLVHLPAMPAQ	11	Unmodified	_TLVHLPAMPAQ_					0	0	0			REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608	REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.21673583984375	3	393.218115	1176.63251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.038	1	18.038	17.538	18.538	0								0	0	0	0.40356	1	5465	5465		36.318	6.7669	1		+		43298	16284	28735	28851	43848	43848					0.0512633404234748
TLVKPRAG	8	Unmodified	_TLVKPRAG_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.26629638671875	2	421.266345	840.518136	-1.2429	-0.00052357	0.93521	0.00039397	-0.30765	-0.0001296	421.2667315266168	20.56	0.30048	20.56	20.398	20.699	0					17	9	2	0	0	0	0.68754	1	5788	5788		35.201	1.6851	1	282730	+		43299	21171	28736	28852	43849	43849					0.09149812342559471
TLVLDICYGDL	11	Unmodified	_TLVLDICYGDL_					0	0	0			REV__ENST00000295958.9_2_4:39558096-39558138:-|nuORF	REV__ENST00000295958.9_2_4:39558096-39558138:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.8778991699219	3	408.877535	1223.61078	0.78304	0.00032017	-0.083599	-3.4182E-05	0.69944	0.00028599	408.877564619774	27.951	4.4749	27.951	27.846	32.321	0					198	90	4	0	0	0	0.66915	1	10077	10077		30.569	0.25114	1	3626700	+		43300	18177	28737	28853	43850	43850					0.007914845031336881
TLVLWNCDI	9	Unmodified	_TLVLWNCDI_					0	0	0		nc|ENSG00000022556|Q9NX02-5|NLRP2;NLRP2|p.N1038Tfs*4|2|0.38|ENSG00000022556|chr19:55000816-55000816|A/-|frameshift_variant;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;nc|ENSG00000022556|Q9NX02-4|NLRP2;ENST00000540597.5_1_19:55501708-55512263:+|nuORF	nc|ENSG00000022556|Q9NX02-5|NLRP2	nc|ENSG00000022556|Q9NX02-5|NLRP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.77490234375	2	538.775885	1075.53722	0.24052	0.00012959	-2.7872	-0.0015017	-2.5466	-0.0013721	538.7746535560631	31.609	0.17817	31.609	31.518	31.696	0					7	4	2	0	0	0	0.28897	1	11534	11534		51.193	4.7359	1	175260			43301	1111	28738	28854	43851	43851					0.002469808513069438
TLVNLIVL	8	Unmodified	_TLVNLIVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.794189453125	2	442.794404	883.574254	0.50443	0.00022336	-0.95295	-0.00042196	-0.44852	-0.0001986	442.79402701321914	39.737	0.12752	39.737	39.672	39.8	0					7	4	2	0	0	0	0.5676	1	15647	15647		53.351	0	1	51644			43302	11021	28739	28855	43852	43852					0.12781020459362935
TLVSDFKQQ	9	Unmodified	_TLVSDFKQQ_					0	0	0		METTL6|p.Y49Tfs*22|1|0.26|ENSG00000206562|chr3:15426367-15426367|A/-|frameshift_variant;METTL6|p.F222Lfs*19|1|0.19|ENSG00000206562|chr3:15414028-15414028|A/-|frameshift_variant;nc|ENSG00000206562|Q8TCB7-2|METTL6;ENSG00000206562|ENST00000383790|METTL6	METTL6|p.Y49Tfs*22|1|0.26|ENSG00000206562|chr3:15426367-15426367|A/-|frameshift_variant	METTL6|p.Y49Tfs*22|1|0.26|ENSG00000206562|chr3:15426367-15426367|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7840576171875	2	533.282389	1064.55022	0.14174	7.5586E-05	-1.0659	-0.00056841	-0.92414	-0.00049283	533.7831309277653	33.952	0.80418	33.952	33.768	34.573	0					35	21	3	0	0	0	0.30951	1	12576	12576		49.442	6.5773	1	478790			43303	7771	28740	28856	43853	43853					0.020531352350417365
TLWARPRR	8	Unmodified	_TLWARPRR_					0	0	0		GPR162|p.G221Vfs*71|1|0.37|ENSG00000250510|chr12:6824555-6824555|G/-|frameshift_variant;ENST00000535220.1_1_12:6933100-6934099:+|nuORF;GPR162|p.G493Dfs*62|1|0.38|ENSG00000250510|chr12:6826911-6826911|G/-|frameshift_variant;ENSG00000250510|ENST00000311268|GPR162	GPR162|p.G221Vfs*71|1|0.37|ENSG00000250510|chr12:6824555-6824555|G/-|frameshift_variant	GPR162|p.G221Vfs*71|1|0.37|ENSG00000250510|chr12:6824555-6824555|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.5464172363281	3	352.545553	1054.61483	1.4455	0.00050962	0.76592	0.00027002	2.2115	0.00077964	352.5458745892422	29.101	2.4325	29.101	28.741	31.174	0					126	49	6	0	0	0	0.8006	1	10753	10753		16.473	16.473	1	25049000			43304	7990	28741	28857	43854	43854					0.08970799622352388
TLWEAEVAR	9	Unmodified	_TLWEAEVAR_					0	0	0		AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|1|1|sense	AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|1|1|sense	AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|1|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7806396484375	2	537.782556	1073.55056	-1.4388	-0.00077378	-1.5543	-0.00083587	-2.9931	-0.0016097	537.781732296828	22.33	0.23474	22.33	22.187	22.422	0					15	5	4	0	0	0	0.22377	1	6618	6618		58.782	4.0056	1	1126000			43305	134	28742	28858	43855	43855					0.01672554954870975
TLWSFSLAY	9	Unmodified	_TLWSFSLAY_					0	0	0		ENST00000238616.9_1_14:75549190-75549412:-|nuORF	ENST00000238616.9_1_14:75549190-75549412:-|nuORF	ENST00000238616.9_1_14:75549190-75549412:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2744750976562	2	544.276575	1086.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.016	1	33.016	32.516	33.516	0								0	0	0	0.34907	1	11545	11545		25.45	0.93098	1				43306	8211	28743	28859	43856	43856					-0.0012106178828616976
TLYEGGYFK	9	Unmodified	_TLYEGGYFK_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2672119140625	2	539.266207	1076.51786	1.9939	0.0010752	-0.28425	-0.00015329	1.7096	0.00092194	539.2659578277006	36.368	0.14535	36.368	36.285	36.43	0					9	4	3	0	0	0	0.42902	1	13709	13709		39.253	2.0937	1	128180			43307	2478	28744	28860	43857	43857					-0.017336521679453654
TLYNKIYQL	9	Unmodified	_TLYNKIYQL_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.8851318359375	3	385.88513	1154.63356	0.015812	6.1017E-06	-0.023995	-9.2594E-06	-0.008183	-3.1577E-06	385.88509842119123	28.766	0.41671	28.766	28.671	29.087	0					29	10	5	0	0	0	0.56424	1	10192	10192		25.574	0	1	2260400			43308	3116	28745	28861	43858	43858					0.062428716828890174
TLYSKEAKF	9	Unmodified	_TLYSKEAKF_					0	0	0			REV__nc|ENSG00000205045|Q6IEE8|SLFN12L	REV__nc|ENSG00000205045|Q6IEE8|SLFN12L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7994995117188	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.702	1	44.702	44.202	45.202	0								0	0	0	0.3119	1	17910	17910		32.812	0	1		+		43309	17511	28746	28862	43859	43859					0.036346097574551095
TMAPPIKSK	9	Unmodified	_TMAPPIKSK_					0	0	0		RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2;RIN2|p.I627Sfs*4|2|0.25|ENSG00000132669|chr20:19975750-19975750|C/-|frameshift_variant;RIN2|p.I627Hfs*7|1|0.47|ENSG00000132669|chr20:19975749-19975750|-/C|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7808532714844	2	486.78097	971.547388	-0.31458	-0.00015313	-4.4565	-0.0021693	-4.7711	-0.0023225	486.7787215580401	20.104	0.43055	20.104	19.811	20.241	0					28	9	4	0	0	0	0.095583	1	6126	6126		80.455	1.0036	1	2004000			43310	3805	28747	28863	43860	43860					0.06047588576552698
TMAPPIKSK	9	Unmodified	_TMAPPIKSK_					0	0	0		RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2;RIN2|p.I627Sfs*4|2|0.25|ENSG00000132669|chr20:19975750-19975750|C/-|frameshift_variant;RIN2|p.I627Hfs*7|1|0.47|ENSG00000132669|chr20:19975749-19975750|-/C|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7808837890625	2	486.78097	971.547388	2.5338	0.0012334	-3.7404	-0.0018208	-1.2066	-0.00058734	486.77909476277694	19.867	0.42063	19.867	19.656	20.077	0					14	8	2	0	0	0	0.082776	1	6227	6227		83.647	14.86	1	991110			43311	3805	28747	28863	43861	43861					0.06047588576552698
TMCPEESL	8	Unmodified	_TMCPEESL_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.1876525878906	2	455.188254	908.361955	0.12265	5.5828E-05	-0.19743	-8.987E-05	-0.074786	-3.4042E-05	455.18818372068137	17.958	0.42794	17.958	17.781	18.209	0					22	9	3	0	0	0	0.75243	1	4541	4541		26.796	0	1	824440			43312	11480	28748	28864	43862	43862					-0.09589182005242947
TMDKSELVQK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TMDKSELVQK_					1	0	0		ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.8135375976562	2	610.813196	1219.61184	-0.75573	-0.00046161	3.1129	0.0019014	2.3572	0.0014398	610.816130671749	27.701	0.60319	27.701	27.321	27.924	0					33	14	5	0	0	0	0.0081296	1	9713	9713		152.06	29.885	1	1985800			43313	5946	28749	28865	43863	43863					0.01081698872008019
TMDKSELVQK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TMDKSELVQK_					1	0	0		ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.8139038085938	2	610.813196	1219.61184	0.46713	0.00028533	-0.45057	-0.00027522	0.01656	1.0115E-05	610.8129585490684	27.739	0.26333	27.739	27.634	27.897	0					13	5	3	0	0	0	0.030824	1	10073	10073		117.53	7.4059	1	1202100			43314	5946	28749	28865	43864	43864					0.01081698872008019
TMDKSELVQK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TMDKSELVQK_					1	0	0		ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	610.8133544921875	2	610.813196	1219.61184	-1.9767	-0.0012074	2.9336	0.0017919	0.95687	0.00058447	610.8152328046885	27.531	0.17293	27.531	27.443	27.616	0					13	4	4	0	0	0	0.065778	1	9025	9025		104.01	13.644	1	294350			43315	5946	28749	28865	43865	43865					0.01081698872008019
TMDKSELVQK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TMDKSELVQK_					1	0	0		ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	ENSG00000166913|ENST00000353703|YWHAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	610.8134765625	2	610.813196	1219.61184	2.9444	0.0017985	-2.0964	-0.0012805	0.84797	0.00051795	610.8123074169556	27.686	0.26895	27.686	27.577	27.846	0					16	5	4	0	0	0	0.0075039	1	9948	9948		155.58	28.123	1	1989400			43316	5946	28749	28865	43866	43866					0.01081698872008019
TMFGLPTLFI	10	Unmodified	_TMFGLPTLFI_					0	0	0			REV__ENSG00000262628|ENST00000575751|OR1D5	REV__ENSG00000262628|ENST00000575751|OR1D5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	380.5437316894531	3	380.543828	1138.60965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.917	1	30.917	30.417	31.417	0								0	0	0	0.4201	1	9894	9894		21.686	0	1		+		43317	17782	28750	28866	43867	43867					0.04589314924874088
TMFGLPTLFI	10	Unmodified	_TMFGLPTLFI_					0	0	0			REV__ENSG00000262628|ENST00000575751|OR1D5	REV__ENSG00000262628|ENST00000575751|OR1D5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.873291015625	3	380.543828	1138.60965	-0.4967	-0.00018901	-0.95169	-0.00036216	-1.4484	-0.00055117	380.54378026226965	31.115	0.31199	31.115	30.929	31.241	0					17	6	4	0	0	0	0.65051	1	11574	11574		28.081	0	1	928350	+		43318	17782	28750	28866	43868	43868					0.04589314924874088
TMGKLVQPLMV	11	2 Oxidation (M)	_TM(Oxidation (M))GKLVQPLM(Oxidation (M))V_		TM(1)GKLVQPLM(1)V		TM(64)GKLVQPLM(64)V	0	0	2			REV__nc|ENSG00000116062|P52701-2|MSH6	REV__nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	624.8385620117188	2	624.838159	1247.66177	0.80569	0.00050343	-0.14664	-9.1625E-05	0.65906	0.0004118	624.8381125473927	13.856	0.24337	13.856	13.733	13.976	0					15	6	4	0	0	0	0.29191	1	3236	3236		63.534	17.077	1	732760	+		43319	20985	28751	28867	43869	43869		753;754			0.04784110276318643
TMGKLVQPLMV	11	2 Oxidation (M)	_TM(Oxidation (M))GKLVQPLM(Oxidation (M))V_		TM(1)GKLVQPLM(1)V		TM(56)GKLVQPLM(56)V	0	0	2			REV__nc|ENSG00000116062|P52701-2|MSH6	REV__nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	624.83837890625	2	624.838159	1247.66177	0.040602	2.537E-05	0.28474	0.00017792	0.32535	0.00020329	624.8384356027102	13.817	0.1518	13.817	13.721	13.873	0					7	3	3	0	0	0	0.35529	1	3460	3460		56.434	18.622	1	530850	+		43320	20985	28751	28867	43870	43870		753;754			0.04784110276318643
TMIGMEHPK	9	2 Oxidation (M)	_TM(Oxidation (M))IGM(Oxidation (M))EHPK_		TM(1)IGM(1)EHPK		TM(55)IGM(55)EHPK	0	0	2		ENST00000473200.1_1_3:194790446-194874713:-|nuORF;nc|ENSG00000173950|Q8NBI6-3|XXYLT1;nc|ENSG00000173950|Q8NBI6-2|XXYLT1;ENSG00000173950|ENST00000310380|XXYLT1	ENST00000473200.1_1_3:194790446-194874713:-|nuORF	ENST00000473200.1_1_3:194790446-194874713:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2506103515625	2	538.249177	1074.4838	3.3739	0.001816	-0.18925	-0.00010186	3.1847	0.0017141	538.2488907211595	34.029	0.21045	34.029	33.924	34.134	0					14	4	4	0	0	0	0.25716	1	13012	13012		54.776	54.776	1	1601200			43321	6463	28752	28868	43871	43871		267;268			-0.050461399228652226
TMISNSVKKNT	11	Unmodified	_TMISNSVKKNT_					0	0	0			REV__tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	REV__tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.3261108398438	2	611.826637	1221.63872	-1.9851	-0.0012145	-0.15567	-9.5244E-05	-2.1408	-0.0013098	612.327345718711	24.994	0.10486	24.994	24.937	25.042	0					4	2	2	0	0	0	0.27742	1	7891	7891		65.157	3.466	1	76269	+		43322	21760	28753	28869	43872	43872					0.03676807483225275
TMIWTIVMY	9	2 Oxidation (M)	_TM(Oxidation (M))IWTIVM(Oxidation (M))Y_		TM(1)IWTIVM(1)Y		TM(50)IWTIVM(50)Y	0	0	2			REV__GPR50|p.L149M|1|0.19|ENSG00000102195|chrX:151180028-151180028|C/A|missense_variant	REV__GPR50|p.L149M|1|0.19|ENSG00000102195|chrX:151180028-151180028|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	595.7872924804688	2	595.285228	1188.5559	0.05915	3.5211E-05	1.2274	0.00073066	1.2866	0.00076587	595.2858144695948	36.674	0.31105	36.674	36.583	36.894	0					14	9	2	0	0	0	0.30268	1	14290	14290		50.025	10.772	1	70715	+		43323	20701	28754	28870	43873	43873		740;741			-0.03083225569116621
TMKCKEGDK	9	Unmodified	_TMKCKEGDK_					0	0	0		ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.249267578125	2	520.249177	1038.4838	1.4375	0.00074787	-1.8468	-0.00096081	-0.4093	-0.00021294	520.2485309143491	19.877	0.20384	19.877	19.784	19.988	0					11	4	4	0	0	0	0.056004	1	6085	6085		93.143	7.9824	1	2469500			43324	5579	28755	28871	43874	43874					-0.03390139922862545
TMKHFKKPT	9	Unmodified	_TMKHFKKPT_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;DGKG|p.M663Ifs*17|1|0.04|ENSG00000058866|chr3:186188308-186188308|C/-|frameshift_variant;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	373.2096862792969	3	373.211071	1116.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.579	1	27.579	27.079	28.079	0								0	0	0	0.36919	1	8803	8803		20.03	0.033703	1				43325	777	28756	28872	43875	43875					0.05774368733477786
TMLACAVER	9	Unmodified	_TMLACAVER_					0	0	0			REV__SLC29A2|p.G431C|1|0.37|ENSG00000174669|chr11:66363516-66363516|C/A|missense_variant	REV__SLC29A2|p.G431C|1|0.37|ENSG00000174669|chr11:66363516-66363516|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.24652099609375	2	497.246437	992.478322	0.78267	0.00038918	-0.99774	-0.00049612	-0.21507	-0.00010694	497.24636232881494	21.964	0.21214	21.964	21.907	22.119	0					11	4	4	0	0	0	0.11411	1	7377	7377		76.17	14.062	1	860520	+		43326	21531	28757	28873	43876	43876					-0.018218187146771925
TMLMLGNILGT	11	Unmodified	_TMLMLGNILGT_					0	0	0		nc|ENSG00000221843|Q68DN1|SPATA31H1;ENSG00000221843|ENST00000447166|C2orf16	nc|ENSG00000221843|Q68DN1|SPATA31H1	nc|ENSG00000221843|Q68DN1|SPATA31H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.3129272460938	2	582.311777	1162.609	-0.17777	-0.00010352	2.1916	0.0012762	2.0139	0.0011727	582.3133023261153	37.711	0.09832	37.711	37.649	37.747	0					10	5	2	0	0	0	0.63398	1	12736	12736		33.922	1.1092	1	42533			43327	7846	28758	28874	43877	43877					0.03420152213516303
TMLTDMMKGNV	11	Unmodified	_TMLTDMMKGNV_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	620.7903442382812	2	620.790352	1239.56615	0.70261	0.00043617	-0.73887	-0.00045869	-0.036261	-2.251E-05	620.7899667640551	38.973	0.47858	38.973	38.778	39.256	0					18	10	2	0	0	0	0.51875	1	15360	15360		42.864	0	1	190830			43328	3402	28759	28875	43878	43878					-0.04404985906217007
TMMGQQVAK	9	Unmodified	_TMMGQQVAK_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1;ENST00000374308.1_1_9:114355204-114361641:-|nuORF;ENST00000374313.5_1_9:114355204-114361983:-|nuORF	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.24688720703125	2	497.246437	992.478322	-1.1525	-0.00057308	1.4807	0.00073626	0.32816	0.00016317	497.2471865843306	21.787	0.15446	21.787	21.706	21.86	0					8	4	2	0	0	0	0.15163	1	6317	6317		67.494	14.142	1	201040			43329	2464	28760	28876	43879	43879					-0.018218187146771925
TMMGQQVAK	9	Unmodified	_TMMGQQVAK_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1;ENST00000374308.1_1_9:114355204-114361641:-|nuORF;ENST00000374313.5_1_9:114355204-114361983:-|nuORF	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2464904785156	2	497.246437	992.478322	0.99255	0.00049354	-0.81974	-0.00040761	0.17281	8.5931E-05	497.2460322876854	21.979	0.21726	21.979	21.871	22.089	0					7	4	2	0	0	0	0.16806	1	7256	7256		65.465	10.701	1	884860			43330	2464	28760	28876	43880	43880					-0.018218187146771925
TMRDMIKK	8	Oxidation (M)	_TMRDM(Oxidation (M))IKK_		TM(0.091)RDM(0.909)IKK		TM(-10)RDM(10)IKK	0	0	1			REV__ENSG00000106927|ENST00000265132|AMBP	REV__ENSG00000106927|ENST00000265132|AMBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.777099609375	2	519.775362	1037.53617	1.6562	0.00086084	1.4703	0.0007642	3.1264	0.001625	519.7762207119005	33.59	0.51039	33.59	33.259	33.77	0					28	12	3	0	0	0	0.41701	1	12866	12866		68.787	68.787	2	2365700	+		43331	13840	28761	28877	43881	43881		522			0.01890443210754711
TMSALSPYGAG	11	Unmodified	_TMSALSPYGAG_					0	0	0			REV__ENSG00000266826|ENST00000583666|IGBP1C	REV__ENSG00000266826|ENST00000583666|IGBP1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7714233398438	2	527.747324	1053.4801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.6	1	17.6	17.1	18.1	0								0	0	0	0.4249	1	5255	5255		31.53	2.3803	1		+		43332	17793	28762	28878	43882	43882					-0.04450486425071176
TMSSNFLGL	9	Unmodified	_TMSSNFLGL_					0	0	0		nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4;TLR4|p.Q423H|1|0.4|ENSG00000136869|chr9:117713397-117713397|A/C|missense_variant	nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2402648925781	2	485.239135	968.463718	3.4908	0.0016939	-0.59756	-0.00028996	2.8932	0.0014039	485.2388235013125	25.511	0.15121	25.511	25.456	25.607	0					8	5	2	0	0	0	0.26904	1	7952	7952		53.351	0	1	163090			43333	4121	28763	28879	43883	43883					-0.02177567591161278
TMVKGLYGI	9	Unmodified	_TMVKGLYGI_					0	0	0		ENSG00000166796|ENST00000541669|LDHC	ENSG00000166796|ENST00000541669|LDHC	ENSG00000166796|ENST00000541669|LDHC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2746276855469	2	491.275521	980.536489	0.58509	0.00028744	-1.6276	-0.00079961	-1.0425	-0.00051217	491.2747499550515	41.08	0.30897	41.08	40.976	41.285	0					26	12	4	0	0	0	0.49003	1	16223	16223		33.516	1.5607	1	378970			43334	5927	28764	28880	43884	43884					0.045441862022585156
TMVRIGIPAL	10	Unmodified	_TMVRIGIPAL_					0	0	0			REV__ENSG00000072506|ENST00000168216|HSD17B10	REV__ENSG00000072506|ENST00000168216|HSD17B10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.8234252929688	2	535.823169	1069.63179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.23	1	24.23	23.73	24.73	0								0	0	0	0.37816	1	7122	7122		37.159	0	1		+		43335	13196	28765	28881	43885	43885					0.09975539393280997
TMWIERTTY	9	Unmodified	_TMWIERTTY_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.7927856445312	2	600.789524	1199.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.919	1	55.919	55.419	56.419	0								0	0	0	0.25587	1	21065	21065		42.864	7.7122	1				43336	4782	28766	28882	43886	43886					-0.027305356083161314
TNCDRTQSH	9	Unmodified	_TNCDRTQSH_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2237548828125	2	531.225079	1060.43561	-0.15971	-8.4843E-05	-3.0528	-0.0016217	-3.2125	-0.0017066	531.2238014859224	25.062	0.20107	25.062	24.967	25.168	0					13	6	3	0	0	0	0.25716	1	7740	7740		54.776	0	1	279630	+		43337	21179	28767	28883	43887	43887					-0.09219497518552089
TNCSSEEEITL	11	Unmodified	_TNCSSEEEITL_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	613.7686767578125	2	613.266275	1224.518	2.9831	0.0018295	-1.4581	-0.0008942	1.525	0.00093526	613.2653631986116	41.554	0.24969	41.554	41.465	41.715	0					12	6	3	0	0	0	0.62108	1	16544	16544		35.152	2.3396	1	161880			43338	1543	28768	28884	43888	43888					-0.08528065020914255
TNDMTPDMFDR	11	Unmodified	_TNDMTPDMFDR_					0	0	0			REV__ENST00000494633.1_1_20:419232-422368:-|nuORF	REV__ENST00000494633.1_1_20:419232-422368:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	671.7733764648438	2	671.773745	1341.53294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.382	1	45.382	44.882	45.882	0								0	0	0	0.45674	1	18174	18174		18.262	0.79408	1		+		43339	14446	28769	28885	43889	43889					-0.12416896424588231
TNEKLLKVI	9	Unmodified	_TNEKLLKVI_					0	0	0			REV__LMOD2|p.P401Ifs*14|1|0.04|ENSG00000170807|chr7:123662786-123662787|-/ATATTTCTTGT|frameshift_variant	REV__LMOD2|p.P401Ifs*14|1|0.04|ENSG00000170807|chr7:123662786-123662787|-/ATATTTCTTGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3345947265625	2	529.334424	1056.6543	0.11207	5.9324E-05	0.20016	0.00010595	0.31223	0.00016527	529.3344727275996	32.299	0.13084	32.299	32.251	32.381	0					8	3	3	0	0	0	0.35021	1	11854	11854		45.972	0.95004	1	142760	+		43340	16377	28770	28886	43890	43890					0.12823462062578983
TNFEDRNAF	9	Unmodified	_TNFEDRNAF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.K121Nfs*2|1|0.14|ENSG00000273749|chr15:22944582-22944582|T/-|frameshift_variant;CYFIP2|p.Q484Rfs*7|1|0.08|ENSG00000055163|chr5:157319855-157319856|-/GA|frameshift_variant;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.2523193359375	2	557.25162	1112.48869	1.2975	0.00072303	0.070802	3.9455E-05	1.3683	0.00076248	557.251570012008	31.825	0.16528	31.825	31.729	31.894	0					13	7	2	0	0	0	0.16806	1	10230	10230		65.465	12.529	1	284920			43341	8095;1279	28771	28887	43891	43891					-0.0630579646424394
TNFEDRNAF	9	Unmodified	_TNFEDRNAF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.K121Nfs*2|1|0.14|ENSG00000273749|chr15:22944582-22944582|T/-|frameshift_variant;CYFIP2|p.Q484Rfs*7|1|0.08|ENSG00000055163|chr5:157319855-157319856|-/GA|frameshift_variant;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.2520751953125	2	557.25162	1112.48869	0.55188	0.00030754	0.305	0.00016996	0.85688	0.0004775	557.2518490737643	32.057	0.17262	32.057	31.966	32.139	0					15	4	4	0	0	0	0.015496	1	11717	11717		129.42	41.667	1	1486500			43342	8095;1279	28771	28887	43892	43892					-0.0630579646424394
TNFEDRNAF	9	Unmodified	_TNFEDRNAF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.K121Nfs*2|1|0.14|ENSG00000273749|chr15:22944582-22944582|T/-|frameshift_variant;CYFIP2|p.Q484Rfs*7|1|0.08|ENSG00000055163|chr5:157319855-157319856|-/GA|frameshift_variant;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2517700195312	2	557.25162	1112.48869	0.11797	6.5739E-05	0.87307	0.00048652	0.99104	0.00055226	557.2519678416205	31.852	0.20283	31.852	31.762	31.965	0					20	8	3	0	0	0	0.13726	1	10572	10572		70.816	28.42	1	208290			43343	8095;1279	28771	28887	43893	43893					-0.0630579646424394
TNFEDRNAF	9	Unmodified	_TNFEDRNAF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.K121Nfs*2|1|0.14|ENSG00000273749|chr15:22944582-22944582|T/-|frameshift_variant;CYFIP2|p.Q484Rfs*7|1|0.08|ENSG00000055163|chr5:157319855-157319856|-/GA|frameshift_variant;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2518920898438	2	557.25162	1112.48869	1.7167	0.00095664	-0.85353	-0.00047563	0.86318	0.00048101	557.2511991022518	32.089	0.19656	32.089	31.945	32.142	0					12	4	3	0	0	0	0.026848	1	12151	12151		112.11	45.678	1	1269100			43344	8095;1279	28771	28887	43894	43894					-0.0630579646424394
TNFEDRNAF	9	Unmodified	_TNFEDRNAF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.K121Nfs*2|1|0.14|ENSG00000273749|chr15:22944582-22944582|T/-|frameshift_variant;CYFIP2|p.Q484Rfs*7|1|0.08|ENSG00000055163|chr5:157319855-157319856|-/GA|frameshift_variant;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2518310546875	2	557.25162	1112.48869	-0.16528	-9.2102E-05	0.79135	0.00044098	0.62607	0.00034888	557.2516042043937	32.078	0.14939	32.078	31.976	32.126	0					5	3	2	0	0	0	0.47473	1	12168	12168		35.152	3.1972	1	88343			43345	8095;1279	28771	28887	43895	43895					-0.0630579646424394
TNFEDRNAF	9	Unmodified	_TNFEDRNAF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.K121Nfs*2|1|0.14|ENSG00000273749|chr15:22944582-22944582|T/-|frameshift_variant;CYFIP2|p.Q484Rfs*7|1|0.08|ENSG00000055163|chr5:157319855-157319856|-/GA|frameshift_variant;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.2527465820312	2	557.25162	1112.48869	-0.92085	-0.00051314	1.6824	0.00093751	0.76154	0.00042437	557.2527541175415	31.829	0.18872	31.829	31.734	31.923	0					14	6	3	0	0	0	0.25761	1	10989	10989		54.722	5.2808	1	255600			43346	8095;1279	28771	28887	43896	43896					-0.0630579646424394
TNGGHQRSK	9	Unmodified	_TNGGHQRSK_					0	0	0		TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.753173828125	2	492.752121	983.48969	2.7457	0.001353	-0.69999	-0.00034492	2.0457	0.001008	492.75166499813025	26.73	0.16879	26.73	26.62	26.788	0					8	3	3	0	0	0	0.47473	1	9491	9491		35.152	35.152	1	520780			43347	22521	28772	28888	43897	43897					-0.0027153730466125126
TNGLNVFVV	9	Unmodified	_TNGLNVFVV_					0	0	0			REV__ENSG00000124370|ENST00000244217|MCEE	REV__ENSG00000124370|ENST00000244217|MCEE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.7685852050781	2	481.768917	961.523281	0.043422	2.0919E-05	-0.021578	-1.0396E-05	0.021844	1.0524E-05	481.768693387807	40.146	0.19891	40.146	40.035	40.234	0					16	11	2	0	0	0	0.43426	1	12990	12990		38.806	8.3025	1	47519	+		43348	14392	28773	28889	43898	43898					0.04098071414523474
TNGLTLGVK	9	Unmodified	_TNGLTLGVK_					0	0	0		PFN2|p.A68V|1|0.21|ENSG00000070087|chr3:149968480-149968480|G/A|missense_variant	PFN2|p.A68V|1|0.21|ENSG00000070087|chr3:149968480-149968480|G/A|missense_variant	PFN2|p.A68V|1|0.21|ENSG00000070087|chr3:149968480-149968480|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.76824951171875	2	451.768917	901.523281	-0.095892	-4.3321E-05	1.0075	0.00045515	0.91159	0.00041183	451.76981551380464	32.253	0.41391	32.253	32.14	32.554	0					21	12	3	0	0	0	0.25716	1	11183	11183		54.776	3.4409	1	308490			43349	11924	28774	28890	43899	43899					0.06858071414524147
TNGPCSVCNNK	11	Unmodified	_TNGPCSVCNNK_					0	0	0			REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.743408203125	2	568.74479	1135.47503	0.21105	0.00012003	-2.3582	-0.0013412	-2.1471	-0.0012212	568.7432674616286	20.969	0.21594	20.969	20.896	21.112	0					8	4	3	0	0	0	0.71641	1	6887	6887		26.063	3.4837	1	226630	+		43350	16608	28775	28891	43900	43900					-0.08729113559365942
TNGPLPDK	8	Unmodified	_TNGPLPDK_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.2242736816406	2	421.224342	840.434132	-0.12101	-5.0971E-05	-0.065484	-2.7584E-05	-0.18649	-7.8555E-05	421.2242616172337	20.574	0.56845	20.574	20.229	20.798	0					23	11	3	0	0	0	0.24999	1	6686	6686		101.25	32.466	1	371210			43351	4512	28776	28892	43901	43901					0.0075323645500020575
TNGPLPDK	8	Unmodified	_TNGPLPDK_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.22412109375	2	421.224342	840.434132	-0.32453	-0.0001367	0.14581	6.1418E-05	-0.17872	-7.528E-05	421.22433334648963	20.6	0.5678	20.6	20.243	20.811	0					26	11	3	0	0	0	0.4001	1	6583	6583		70.816	26.439	1	631110			43352	4512	28776	28892	43902	43902					0.0075323645500020575
TNHLRVGV	8	Unmodified	_TNHLRVGV_					0	0	0			REV__ENST00000263026.9_1_16:22296162-22296357:+|nuORF	REV__ENST00000263026.9_1_16:22296162-22296357:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	448.25885009765625	2	448.259051	894.503549	-0.69297	-0.00031063	0.4113	0.00018437	-0.28167	-0.00012626	448.25911182810216	51.444	0.34401	51.444	51.324	51.668	0					50	21	3	0	0	0	0.79882	1	15352	15352		19.36	2.8868	1	435890	+		43353	18039	28777	28893	43903	43903					0.05207740194430244
TNKPVVSAL	9	Unmodified	_TNKPVVSAL_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7763366699219	2	464.776742	927.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.876	1	26.876	26.376	27.376	0								0	0	0	0.3245	1	8500	8500		30.318	0	1				43354	8092	28778	28894	43904	43904					0.07226357931563143
TNLKELVL	8	Unmodified	_TNLKELVL_					0	0	0		ENST00000409891.5_1_2:175439955-175446055:-|nuORF	ENST00000409891.5_1_2:175439955-175446055:-|nuORF	ENST00000409891.5_1_2:175439955-175446055:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2871398925781	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.812	1	37.812	37.312	38.312	0								0	0	0	1.7419	1	14809	14809		68.787	0	1				43355	9304	28779	28895	43905	43905					0.09219528591370363
TNLPAARERNP	11	Unmodified	_TNLPAARERNP_					0	0	0			REV__MAST4|p.S1880Afs*59|1|0.41|ENSG00000069020|chr5:67164811-67164811|C/-|frameshift_variant	REV__MAST4|p.S1880Afs*59|1|0.41|ENSG00000069020|chr5:67164811-67164811|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.5582580566406	3	413.558187	1237.65273	0.098443	4.0712E-05	0.17478	7.228E-05	0.27322	0.00011299	413.55835353204884	15.07	0.0687	15.07	15.02	15.089	0					6	2	3	0	0	0	0.74458	1	3310	3310		23.378	0.81632	1	111180	+		43356	20868	28780	28896	43906	43906					0.043412210265159956
TNLVFIPTA	9	Unmodified	_TNLVFIPTA_					0	0	0			REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.27777099609375	2	488.279118	974.543683	-2.9066	-0.0014192	-1.2385	-0.00060473	-4.1451	-0.002024	488.2785627066323	39.544	0.26153	39.544	39.467	39.728	0					26	13	3	0	0	0	0.30951	1	14074	14074		49.442	0	1	318820	+		43357	21834	28781	28897	43907	43907					0.05539242074326012
TNPKQGKQ	8	Unmodified	_TNPKQGKQ_					0	0	0			REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF	REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.748291015625	2	450.748516	899.482479	-0.16822	-7.5826E-05	0.39234	0.00017685	0.22412	0.00010102	450.74873564137624	13.251	0.34876	13.251	12.991	13.339	0					27	19	2	0	0	0	0.54629	1	2641	2641		55.504	0	1	55453	+		43358	19124	28782	28898	43908	43908					0.02871730094909708
TNRKRPRP	8	Unmodified	_TNRKRPRP_					0	0	0		ENST00000301071.11_1_12:49582839-49582968:-|nuORF	ENST00000301071.11_1_12:49582839-49582968:-|nuORF	ENST00000301071.11_1_12:49582839-49582968:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.2095947265625	3	342.208941	1023.60499	0.50823	0.00017392	1.4677	0.00050224	1.9759	0.00067617	342.20942192978976	20.283	0.15854	20.283	20.18	20.339	0					8	3	3	0	0	0	0.7126	1	6276	6276		26.693	3.1702	1	1576900			43359	8490	28783	28899	43909	43909					0.09413611616992057
TNSSSMVSV	9	Unmodified	_TNSSSMVSV_					0	0	0			REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF	REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.2088623046875	2	456.210575	910.406597	-2.6353	-0.0012022	-1.0962	-0.00050008	-3.7314	-0.0017023	456.2100386190397	25.382	0.14654	25.382	25.282	25.428	0					5	3	2	0	0	0	0.39215	1	8053	8053		42.396	6.7778	1	161190	+		43360	19034	28784	28900	43910	43910					-0.05219034867525352
TNTQFLRCAY	10	Unmodified	_TNTQFLRCAY_					0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.7935791015625	2	608.792598	1215.57064	0.15634	9.5182E-05	-0.15942	-9.7055E-05	-0.0030772	-1.8734E-06	608.7926394987453	24.059	0.52728	24.059	23.946	24.474	0					39	16	5	0	0	0	0.72769	1	7188	7188		17.468	1.8262	1	1238100	+		43361	12250	28785	28901	43911	43911					-0.02852017376767435
TNVKRGVL	8	Unmodified	_TNVKRGVL_					0	0	0		ENST00000502687.1_1_4:40818111-40824073:-|nuORF;nc|ENSG00000163697|Q92870-3|APBB2;nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2	ENST00000502687.1_1_4:40818111-40824073:-|nuORF	ENST00000502687.1_1_4:40818111-40824073:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.77862548828125	2	443.777077	885.5396	2.6004	0.001154	1.581	0.0007016	4.1814	0.0018556	443.77786602685507	39.671	0.28127	39.671	39.543	39.825	0					15	6	3	0	0	0	0.75243	1	15691	15691		26.796	0.10319	1	129720			43362	5596	28786	28902	43912	43912					0.09225197371290506
TPAAATSSSPS	11	Unmodified	_TPAAATSSSPS_					0	0	0		nc|ENSG00000101935|Q9Y4X0-2|AMMECR1;nc|ENSG00000101935|Q9Y4X0-3|AMMECR1;AMMECR1|p.R298Lfs*5|1|0.81|ENSG00000101935|chrX:110198629-110198629|C/-|frameshift_variant;ENSG00000101935|ENST00000262844|AMMECR1	nc|ENSG00000101935|Q9Y4X0-2|AMMECR1	nc|ENSG00000101935|Q9Y4X0-2|AMMECR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7566223144531	2	488.732729	975.450904	-0.023845	-1.1654E-05	-0.57224	-0.00027967	-0.59609	-0.00029133	488.73244985192684	29.049	0.2213	29.049	28.904	29.125	0					12	8	2	0	0	0	0.60656	1	9138	9138		36.447	2.9312	1	58424			43363	142	28787	28903	43913	43913					-0.03780307449699194
TPAALDLNK	9	Unmodified	_TPAALDLNK_					0	0	0			REV__ENSG00000161714|ENST00000619929|PLCD3	REV__ENSG00000161714|ENST00000619929|PLCD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7659912109375	2	471.766374	941.518196	-0.78091	-0.00036841	0.13341	6.2938E-05	-0.6475	-0.00030547	471.766409844428	26.968	0.11254	26.968	26.895	27.008	0					4	2	2	0	0	0	0.51817	1	9724	9724		30.504	1.3541	1	67324	+		43364	15788	28788	28904	43914	43914					0.04509767551905952
TPAEIREEF	9	Unmodified	_TPAEIREEF_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;ENST00000460594.5_1_1:6714320-6761860:-|nuORF;ENST00000485073.5_1_1:6713895-6761860:-|nuORF	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.2724609375	2	546.272021	1090.52949	1.861	0.0010166	-0.42363	-0.00023141	1.4373	0.00078518	546.2716161544796	34.417	0.21076	34.417	34.334	34.545	0					11	5	3	0	0	0	0.46194	1	12847	12847		36.447	5.9431	1	229930			43365	1009	28789	28905	43915	43915					-0.012154551446201367
TPAEIREEF	9	Unmodified	_TPAEIREEF_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;ENST00000460594.5_1_1:6714320-6761860:-|nuORF;ENST00000485073.5_1_1:6713895-6761860:-|nuORF	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2731323242188	2	546.272021	1090.52949	0.84816	0.00046333	0.40104	0.00021908	1.2492	0.0006824	546.2721471097964	34.431	0.24059	34.431	34.311	34.552	0					11	6	2	0	0	0	0.11411	1	13262	13262		76.17	23.871	1	145870			43366	1009	28789	28905	43916	43916					-0.012154551446201367
TPAEIREEF	9	Unmodified	_TPAEIREEF_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;ENST00000460594.5_1_1:6714320-6761860:-|nuORF;ENST00000485073.5_1_1:6713895-6761860:-|nuORF	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.2725830078125	2	546.272021	1090.52949	0.55277	0.00030196	0.61038	0.00033343	1.1631	0.00063539	546.272304942725	34.353	0.26127	34.353	34.294	34.555	0					11	5	3	0	0	0	0.054723	1	13172	13172		93.598	35.368	1	487670			43367	1009	28789	28905	43917	43917					-0.012154551446201367
TPAEPVQYY	9	Unmodified	_TPAEPVQYY_					0	0	0		ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.256103515625	2	534.25584	1066.49713	0.71115	0.00037994	-2.0565	-0.0010987	-1.3453	-0.00071875	534.7555202082475	37.932	0.29522	37.932	37.804	38.099	0					8	6	2	0	0	0	0.22377	1	14852	14852		58.782	4.0173	1	81895			43368	1387	28790	28906	43918	43918					-0.03346242547604561
TPAERGLVY	9	Unmodified	_TPAERGLVY_					0	0	0		ENST00000357085.4_2_6:25963311-25963422:+|nuORF	ENST00000357085.4_2_6:25963311-25963422:+|nuORF	ENST00000357085.4_2_6:25963311-25963422:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.77154541015625	2	503.271824	1004.5291	-0.44041	-0.00022165	-1.4203	-0.00071477	-1.8607	-0.00093642	503.771839402834	30.439	0.16422	30.439	30.294	30.458	0					8	3	3	0	0	0	0.16806	1	11262	11262		65.465	12.114	1	195930			43369	8816	28791	28907	43919	43919					0.027011699261947797
TPAEVSHRF	9	Unmodified	_TPAEVSHRF_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENST00000473267.1_1_1:155720377-155721671:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2667846679688	2	522.267073	1042.51959	0.39759	0.00020765	1.0195	0.00053244	1.4171	0.00074009	522.2671553964999	22.241	0.068325	22.241	22.2	22.269	0					4	2	2	0	0	0	0.43488	1	6522	6522		31.53	5.9558	1	35446			43370	2988	28792	28908	43920	43920					3.401640651645721E-05
TPAGKPSPPT	10	Unmodified	_TPAGKPSPPT_					0	0	0			REV__ENSG00000196531|ENST00000454682|NACA	REV__ENSG00000196531|ENST00000454682|NACA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.75848388671875	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.211	1	33.211	32.711	33.711	0								0	0	0	0.37602	1	11631	11631		37.812	4.2959	1		+		43371	17264	28793	28909	43921	43921					0.024854810348415413
TPAGVQVIL	9	Unmodified	_TPAGVQVIL_					0	0	0		ENSG00000130312|ENST00000252602|MRPL34	ENSG00000130312|ENST00000252602|MRPL34	ENSG00000130312|ENST00000252602|MRPL34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.2742919921875	2	449.273835	896.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.152	1	47.152	46.652	47.652	0								0	0	0	0.22284	1	18841	18841		47.657	1.7054	1				43372	3633	28794	28910	43922	43922					0.08071259419898524
TPAGVVNKY	9	Unmodified	_TPAGVVNKY_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.76092529296875	2	474.761092	947.507631	-1.5807	-0.00075044	0.99535	0.00047255	-0.58532	-0.00027789	474.7614979754443	24.483	0.24827	24.483	24.407	24.655	0					16	8	3	0	0	0	0.014688	1	7487	7487		131.03	62.547	1	407820			43373	6392	28795	28911	43923	43923					0.031777848974684275
TPAGVVNKY	9	Unmodified	_TPAGVVNKY_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.76055908203125	2	474.761092	947.507631	-0.12033	-5.7126E-05	-1.0959	-0.00052031	-1.2163	-0.00057744	474.76075328096886	24.72	0.3634	24.72	24.61	24.974	0					31	7	6	0	0	0	0.0033339	1	8670	8670		166.68	92.704	1	2966500			43374	6392	28795	28911	43924	43924					0.031777848974684275
TPAGVVNKY	9	Unmodified	_TPAGVVNKY_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7609558105469	2	474.761092	947.507631	0.61504	0.000292	-1.2136	-0.00057617	-0.59856	-0.00028417	474.7604707225448	24.702	0.31401	24.702	24.593	24.907	0					21	6	6	0	0	0	0.010494	1	8686	8686		139.97	74.167	1	2372200			43375	6392	28795	28911	43925	43925					0.031777848974684275
TPAGVVNKY	9	Unmodified	_TPAGVVNKY_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.76043701171875	2	474.761092	947.507631	-0.098476	-4.6753E-05	-0.51052	-0.00024238	-0.609	-0.00028913	474.7608148083364	24.525	0.23779	24.525	24.439	24.677	0					11	5	3	0	0	0	0.010494	1	7650	7650		139.97	79.852	1	486000			43376	6392	28795	28911	43926	43926					0.031777848974684275
TPAGVVNKY	9	Unmodified	_TPAGVVNKY_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7613525390625	2	474.761092	947.507631	-0.44151	-0.00020961	0.27888	0.0001324	-0.16263	-7.721E-05	474.76116872005764	24.554	0.27493	24.554	24.426	24.701	0					14	6	3	0	0	0	0.0061615	1	7661	7661		153.04	76.262	1	634760			43377	6392	28795	28911	43927	43927					0.031777848974684275
TPAGVVNKY	9	Unmodified	_TPAGVVNKY_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7608337402344	2	474.761092	947.507631	-0.60429	-0.0002869	-0.22557	-0.00010709	-0.82987	-0.00039399	474.76114512060735	24.684	0.39945	24.684	24.53	24.929	0					37	8	6	0	0	0	5.1026E-05	1	8532	8532		195.81	116.1	1	4406100			43378	6392	28795	28911	43928	43928					0.031777848974684275
TPALVNAAVTY	11	Unmodified	_TPALVNAAVTY_					0	0	0		ENST00000534385.1_1_11:118272380-118277824:+|nuORF;ENSG00000249222|ENST00000505920|ATP5MGL;ENSG00000167283|ENST00000300688|ATP5MG;ENST00000533172.5_1_11:118272380-118279724:+|nuORF	ENST00000534385.1_1_11:118272380-118277824:+|nuORF	ENST00000534385.1_1_11:118272380-118277824:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.3076171875	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.957	1	44.957	44.457	45.457	0								0	0	0	0.32833	1	17447	17447		46.457	9.2977	1				43379	5982	28796	28912	43929	43929					0.04261994786179457
TPAPAPCPAP	10	Unmodified	_TPAPAPCPAP_					0	0	0			REV__ENSG00000169509|ENST00000368790|CRCT1	REV__ENSG00000169509|ENST00000368790|CRCT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.2281188964844	2	461.228571	920.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.264	1	32.264	31.764	32.764	0								0	0	0	0.2708	1	11828	11828		55.504	16.698	1		+		43380	16317	28797	28913	43930	43930					-0.02081532900047023
TPAPGPPPG	9	Unmodified	_TPAPGPPPG_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.70831298828125	2	395.708328	789.402104	0.1033	4.0877E-05	-0.0095063	-3.7617E-06	0.093794	3.7115E-05	395.70821887566	24.318	0.31432	24.318	24.113	24.427	0					11	6	2	0	0	0	0.30268	1	8508	8508		50.025	7.5501	1	150010	+		43381	17792	28798	28914	43931	43931					-0.0010213122814093367
TPAPPGPAT	9	Unmodified	_TPAPPGPAT_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.713623046875	2	404.713611	807.412668	0.65518	0.00026516	-1.1231	-0.00045453	-0.46791	-0.00018937	404.71312046324965	24.379	0.20158	24.379	24.236	24.437	0					6	4	2	0	0	0	0.59802	1	8213	8213		21.96	0	1	97832			43382	4768	28799	28915	43932	43932					0.0012585142628722679
TPAPPGPATM	10	Unmodified	_TPAPPGPATM_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2340087890625	2	470.233853	938.453153	0.47845	0.00022498	-0.31613	-0.00014866	0.16232	7.6329E-05	470.2334805544774	32.253	0.21852	32.253	32.151	32.369	0					7	5	2	0	0	0	0.24256	1	11827	11827		74.255	22.92	1	47027			43383	4768	28800	28916	43933	43933					-0.01853550245596125
TPAPPTHAL	9	Unmodified	_TPAPPTHAL_					0	0	0		SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant;ENSG00000165684|ENST00000684778|SNAPC4	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7477722167969	2	452.747985	903.481417	-0.11802	-5.3434E-05	-0.44201	-0.00020012	-0.56003	-0.00025355	452.7477467973511	26.385	0.30861	26.385	26.185	26.493	0					13	6	3	0	0	0	0.13519	1	9423	9423		71.296	10.324	1	483150			43384	5820	28801	28917	43934	43934					0.025815157259899024
TPAPPTHAL	9	Unmodified	_TPAPPTHAL_					0	0	0		SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant;ENSG00000165684|ENST00000684778|SNAPC4	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7478332519531	2	452.747985	903.481417	-0.4134	-0.00018717	-0.16684	-7.5538E-05	-0.58024	-0.0002627	452.7478944873342	26.306	0.41712	26.306	26	26.417	0					14	8	3	0	0	0	0.16524	1	9267	9267		65.803	19.851	1	607340			43385	5820	28801	28917	43935	43935					0.025815157259899024
TPAQSHLSR	9	Unmodified	_TPAQSHLSR_					0	0	0			REV__nc|ENSG00000180316|Q8N8W4-2|PNPLA1	REV__nc|ENSG00000180316|Q8N8W4-2|PNPLA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.7646484375	2	498.764697	995.514842	1.0509	0.00052417	1.3262	0.00066145	2.3771	0.0011856	499.2672881621361	16.624	0.16782	16.624	16.483	16.65	0					11	3	4	0	0	0	0.41113	1	4638	4638		40.778	1.972	1	1004500	+		43386	16805	28802	28918	43936	43936					0.01690517497900146
TPASAGHVW	9	Unmodified	_TPASAGHVW_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.23046875	2	463.229959	924.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.247	1	28.247	27.747	28.747	0								0	0	0	0.026532	1	8803	8803		97.473	31.67	1				43387	3412	28803	28919	43937	43937					-0.019879414508636728
TPASAGHVW	9	Unmodified	_TPASAGHVW_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.22967529296875	2	463.229959	924.445365	0.060931	2.8225E-05	-0.71585	-0.0003316	-0.65492	-0.00030338	463.229536269553	28.507	0.41561	28.507	28.303	28.719	0					22	10	3	0	0	0	0.005007	1	10071	10071		157.99	72.63	1	366560			43388	3412	28803	28919	43938	43938					-0.019879414508636728
TPASAGHVW	9	Unmodified	_TPASAGHVW_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.2297058105469	2	463.229959	924.445365	-0.14327	-6.6365E-05	-3.4928	-0.001618	-3.6361	-0.0016843	463.2282061004347	28.206	0.31684	28.206	28.115	28.432	0					12	7	2	0	0	0	0.023949	1	9366	9366		115.46	44.081	1	226360			43389	3412	28803	28919	43939	43939					-0.019879414508636728
TPASKGFT	8	Unmodified	_TPASKGFT_					0	0	0			REV__ENST00000518197.1_1_8:21768344-21771136:-|nuORF	REV__ENST00000518197.1_1_8:21768344-21771136:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.7137756347656	2	404.713611	807.412668	0.042165	1.7065E-05	0.35716	0.00014455	0.39933	0.00016161	404.7136689312002	24.318	0.16339	24.318	24.213	24.377	0					6	3	2	0	0	0	0.76187	1	8512	8512		25.574	1.0549	1	78303	+		43390	19927	28804	28920	43940	43940					0.0012585142628722679
TPAVPVESKP	10	Unmodified	_TPAVPVESKP_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.287353515625	2	512.787307	1023.56006	-0.27724	-0.00014216	0.10784	5.53E-05	-0.16939	-8.6863E-05	512.7878284543408	37.787	0.51348	37.787	37.407	37.921	0					61	28	3	0	0	0	0.61187	1	12673	12673		32.812	7.3622	1	198320			43391	5038	28805	28921	43941	43941					0.0492232324043016
TPCSVRRIY	9	Unmodified	_TPCSVRRIY_					0	0	0		ENST00000479214.5_1_1:247108965-247109076:-|nuORF	ENST00000479214.5_1_1:247108965-247109076:-|nuORF	ENST00000479214.5_1_1:247108965-247109076:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.7919921875	2	547.792401	1093.57025	0.42076	0.00023049	-2.7321	-0.0014966	-2.3113	-0.0012661	547.790730865885	28.605	0.22701	28.605	28.52	28.747	0					16	9	3	0	0	0	0.26904	1	9236	9236		53.351	3.3269	1	128390			43392	9939	28806	28922	43942	43942					0.027206076940274215
TPCTPHTTY	9	Unmodified	_TPCTPHTTY_					0	0	0		SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant	SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.72613525390625	2	510.726392	1019.43823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.046	1	24.046	23.546	24.546	0								0	0	0	0.27166	1	8366	8366		40.573	9.0428	1				43393	7788	28807	28923	43943	43943					-0.07071042113602743
TPDEIDHVF	9	Unmodified	_TPDEIDHVF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;PARP14|p.N415Mfs*3|1|0.05|ENSG00000173193|chr3:122699793-122699793|A/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7508544921875	2	536.750921	1071.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.539	1	40.539	40.039	41.039	0								0	0	0	0.1836	1	16104	16104		53.351	7.3995	1				43394	6411	28808	28924	43944	43944					-0.04559430552990307
TPDETKLKM	9	Unmodified	_TPDETKLKM_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7791137695312	2	531.778625	1061.5427	2.4064	0.0012797	-1.4496	-0.00077087	0.95682	0.00050882	531.7781897761992	24.661	0.30127	24.661	24.573	24.874	0					15	7	3	0	0	0	0.040209	1	8325	8325		82.75	3.0379	1	443720			43395	7354;23071	28809	28925	43945	43945					0.014386596431222642
TPDPSRSVF	9	Unmodified	_TPDPSRSVF_					0	0	0		ENST00000581645.5_1_17:45915212-45916069:-|nuORF;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENSG00000141295|ENST00000290216|SCRN2	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2538757324219	2	503.253631	1004.49271	0.73765	0.00037122	-0.82989	-0.00041765	-0.092247	-4.6424E-05	503.25327465665623	32.171	0.41408	32.171	31.938	32.353	0					19	10	2	0	0	0	0.30841	1	11783	11783		49.536	11.725	1	434880			43396	4436	28810	28926	43946	43946					-0.009357069705174581
TPDPSRSVF	9	Unmodified	_TPDPSRSVF_					0	0	0		ENST00000581645.5_1_17:45915212-45916069:-|nuORF;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENSG00000141295|ENST00000290216|SCRN2	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.25439453125	2	503.253631	1004.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.957	1	31.957	31.457	32.457	0								0	0	0	0.27521	1	11062	11062		40.058	4.4399	1				43397	4436	28810	28926	43947	43947					-0.009357069705174581
TPDPSRSVF	9	Unmodified	_TPDPSRSVF_					0	0	0		ENST00000581645.5_1_17:45915212-45916069:-|nuORF;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENSG00000141295|ENST00000290216|SCRN2	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2538146972656	2	503.253631	1004.49271	-0.44862	-0.00022577	0.67605	0.00034022	0.22743	0.00011446	503.25383334541635	32.146	0.46864	32.146	31.869	32.338	0					28	9	4	0	0	0	0.13726	1	12049	12049		70.816	31.563	1	446450			43398	4436	28810	28926	43948	43948					-0.009357069705174581
TPDPTRPLTF	10	Unmodified	_TPDPTRPLTF_					0	0	0		nc|ENSG00000186377|Q8N118-3|CYP4X1;nc|ENSG00000186377|Q8N118-2|CYP4X1;ENSG00000186377|ENST00000371901|CYP4X1	nc|ENSG00000186377|Q8N118-3|CYP4X1	nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.8042602539062	2	572.803488	1143.59242	1.6526	0.00094659	-0.92527	-0.00053	0.72729	0.0004166	573.3048638723506	40.032	0.32064	40.032	39.867	40.188	0					12	7	2	0	0	0	0.58308	1	15910	15910		36.318	0.69936	1	71025			43399	7134	28811	28927	43949	43949					0.026371106433998648
TPDSSKTEM	9	Unmodified	_TPDSSKTEM_					0	0	0		nc|ENSG00000147010|Q96B97-3|SH3KBP1;SH3KBP1|p.L574Cfs*39|3|0.28|ENSG00000147010|chrX:19542097-19542097|G/-|frameshift_variant;nc|ENSG00000147010|Q96B97-2|SH3KBP1;ENSG00000147010|ENST00000397821|SH3KBP1	nc|ENSG00000147010|Q96B97-3|SH3KBP1	nc|ENSG00000147010|Q96B97-3|SH3KBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2202453613281	2	498.221139	994.427726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.343	1	18.343	17.843	18.843	0								0	0	0	0.11963	1	5348	5348		66.962	11.458	1				43400	4759	28812	28928	43950	43950					-0.06971069558665022
TPDVARAM	8	Unmodified	_TPDVARAM_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7184753417969	2	430.71837	859.422187	0.20256	8.7245E-05	-0.35114	-0.00015124	-0.14858	-6.3996E-05	430.718551623347	26.263	0.13865	26.263	26.175	26.314	0					8	3	3	0	0	0	0.2678	1	9031	9031		93.195	41.86	1	91389			43401	6026	28813	28929	43951	43951					-0.013147035598422008
TPEEDQRTY	9	Unmodified	_TPEEDQRTY_					0	0	0		ENST00000595700.5_1_19:44242246-44254893:-|nuORF;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.7551879882812	2	569.754192	1137.49383	1.4615	0.00083271	-0.70488	-0.00040161	0.75666	0.00043111	569.7538979043857	20.733	0.14956	20.733	20.669	20.819	0					8	5	2	0	0	0	0.28897	1	5598	5598		51.193	5.2204	1	100500			43402	2395	28814	28930	43952	43952					-0.06941537392253849
TPEEDQRTY	9	Unmodified	_TPEEDQRTY_					0	0	0		ENST00000595700.5_1_19:44242246-44254893:-|nuORF;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7542724609375	2	569.754192	1137.49383	1.7541	0.00099941	-1.1343	-0.0006463	0.61976	0.00035311	569.7535746544685	20.997	0.38851	20.997	20.892	21.281	0					20	9	3	0	0	0	0.016683	1	6606	6606		127.46	53.207	1	446830			43403	2395	28814	28930	43953	43953					-0.06941537392253849
TPEEDQRTY	9	Unmodified	_TPEEDQRTY_					0	0	0		ENST00000595700.5_1_19:44242246-44254893:-|nuORF;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7543334960938	2	569.754192	1137.49383	1.2954	0.00073806	-0.10308	-5.8732E-05	1.1923	0.00067933	569.7538291867388	20.8	0.15101	20.8	20.708	20.859	0					5	3	2	0	0	0	0.40353	1	5931	5931		41.427	7.911	1	54343			43404	2395	28814	28930	43954	43954					-0.06941537392253849
TPEEDQRTY	9	Unmodified	_TPEEDQRTY_					0	0	0		ENST00000595700.5_1_19:44242246-44254893:-|nuORF;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.754638671875	2	569.754192	1137.49383	0.3081	0.00017554	0.57234	0.00032609	0.88044	0.00050163	569.7544952662994	20.951	0.21533	20.951	20.844	21.059	0					12	4	3	0	0	0	0.020674	1	6757	6757		120.87	56.661	1	504370			43405	2395	28814	28930	43955	43955					-0.06941537392253849
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	582.7985229492188	2	582.798403	1163.58225	0.53499	0.00031179	-0.19047	-0.000111	0.34453	0.00020079	582.7981790826984	23.816	0.34414	23.816	23.681	24.025	0					26	12	3	0	0	0	0.3269	1	6919	6919		47.96	0	1	269260			43406	4279	28815	28931	43956	43956					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.8679504394531	3	388.868027	1163.58225	0.86649	0.00033695	-0.80108	-0.00031151	0.065417	2.5438E-05	388.8677061162528	24.055	0.49216	24.055	23.785	24.277	0					24	11	3	0	0	0	0.36892	1	8059	8059		68.846	8.9154	1	2147800			43407	4279	28815	28931	43957	43957					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.7987060546875	2	582.798403	1163.58225	-0.0027164	-1.5831E-06	0.53791	0.0003135	0.5352	0.00031191	582.7986409580088	24.053	0.40542	24.053	23.904	24.309	0					28	9	4	0	0	0	0.013878	1	8037	8037		132.76	0	1	2269000			43408	4279	28815	28931	43958	43958					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.7984008789062	2	582.798403	1163.58225	-0.1967	-0.00011463	0.60821	0.00035446	0.41151	0.00023983	582.7986398429416	23.83	0.18343	23.83	23.701	23.884	0					11	6	2	0	0	0	0.34452	1	7208	7208		46.457	5.0302	1	216300			43409	4279	28815	28931	43959	43959					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.7982177734375	2	582.798403	1163.58225	-0.025047	-1.4597E-05	0.4713	0.00027467	0.44626	0.00026008	582.798712261917	23.852	0.18405	23.852	23.722	23.906	0					9	6	2	0	0	0	0.36135	1	7203	7203		45.022	4.964	1	90950			43410	4279	28815	28931	43960	43960					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.798583984375	2	582.798403	1163.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.031	1	24.031	23.531	24.531	0								0	0	0	0.00069993	1	8359	8359		139.97	0	1				43411	4279	28815	28931	43961	43961					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.798828125	2	582.798403	1163.58225	-0.30872	-0.00017992	1.0512	0.00061267	0.74253	0.00043274	582.7989438215143	24.037	0.36676	24.037	23.83	24.196	0					17	7	4	0	0	0	0.11411	1	8329	8329		76.17	5.3535	1	581520			43412	4279	28815	28931	43962	43962					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	388.86798095703125	3	388.868027	1163.58225	0.2394	9.3095E-05	-0.13704	-5.329E-05	0.10236	3.9804E-05	388.86795303824874	23.868	0.22405	23.868	23.725	23.949	0					8	5	2	0	0	0	0.56424	1	7343	7343		47.96	7.9014	1	120120			43413	4279	28815	28931	43963	43963					0.007005029181982536
TPEEKIREY	9	Unmodified	_TPEEKIREY_					0	0	0		ENST00000514325.1_1_4:83279715-83279970:-|nuORF;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.8680725097656	3	388.868027	1163.58225	-0.69453	-0.00027008	0.56638	0.00022025	-0.12816	-4.9836E-05	388.86816594641306	23.989	0.51549	23.989	23.78	24.295	0					27	10	4	0	0	0	0.15163	1	8202	8202		83.647	9.482	1	3261600			43414	4279	28815	28931	43964	43964					0.007005029181982536
TPEEKSAVTAL	11	Unmodified	_TPEEKSAVTAL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	573.3062744140625	2	573.306061	1144.59757	0.072262	4.1428E-05	0.31211	0.00017893	0.38437	0.00022036	573.3061341741244	28.856	0.19761	28.856	28.769	28.966	0					16	7	3	0	0	0	0.32196	1	9346	9346		60.167	15.79	1	261040			43415	7970	28816	28932	43965	43965					0.0310536971539932
TPEEKSAVTAL	11	Unmodified	_TPEEKSAVTAL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.3062744140625	2	573.306061	1144.59757	2.0143	0.0011548	-1.4386	-0.00082474	0.57573	0.00033007	573.3052746263396	29.112	0.53367	29.112	28.762	29.295	0					21	11	3	0	0	0	0.18862	1	10750	10750		75.652	1.4872	1	1302000			43416	7970	28816	28932	43966	43966					0.0310536971539932
TPEEKSAVTAL	11	Unmodified	_TPEEKSAVTAL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.306396484375	2	573.306061	1144.59757	0.61147	0.00035056	0.49076	0.00028136	1.1022	0.00063192	573.3063242443493	28.886	0.23223	28.886	28.793	29.026	0					10	5	3	0	0	0	0.33569	1	9659	9659		58.63	21.121	1	154150			43417	7970	28816	28932	43967	43967					0.0310536971539932
TPEKVFVVM	9	Unmodified	_TPEKVFVVM_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;PRKD2|p.D633Tfs*5|1|0.38|ENSG00000105287|chr19:46689611-46689611|C/-|frameshift_variant;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2903442382812	2	525.288628	1048.5627	0.56314	0.00029581	0.37481	0.00019688	0.93795	0.00049269	525.2887238933524	41.857	0.2075	41.857	41.728	41.935	0					12	6	3	0	0	0	0.36892	1	16655	16655		44.377	3.8046	1	111280			43418	2343	28817	28933	43968	43968					0.04036455373739045
TPEMLPVK	8	Oxidation (M)	_TPEM(Oxidation (M))LPVK_		TPEM(1)LPVK		TPEM(61)LPVK	0	0	1		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant;DOCK8|p.P952Qfs*24|1|0.35|ENSG00000107099|chr9:386404-386404|C/-|frameshift_variant;DOCK8|p.M1114Yfs*4|1|0.4|ENSG00000107099|chr9:405014-405015|-/T|frameshift_variant;ENST00000454469.6_1_9:214976-340322:+|nuORF;DOCK8|p.F547Cfs*51|1|0.09|ENSG00000107099|chr9:340281-340282|-/GTTCTAG|frameshift_variant;ENST00000495184.5_1_9:286487-368312:+|nuORF	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7533264160156	2	465.751879	929.489204	0.67516	0.00031446	-0.3901	-0.00018169	0.28506	0.00013277	465.7514122969403	20.934	0.60983	20.934	20.828	21.437	0					15	12	2	0	0	0	0.49216	1	6747	6747		60.972	8.6728	1	957610			43419	2469	28818	28934	43969	43969		107			0.021639069312755055
TPENLNQYLI	10	Unmodified	_TPENLNQYLI_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.2130126953125	3	402.211794	1203.61355	0.94838	0.00038145	1.2254	0.00049286	2.1738	0.00087431	402.2123873198112	19.006	2.1595	19.006	18.865	21.025	0					78	49	3	0	0	0	0.56063	1	5669	5669		38.754	1.2454	1	2037700	+		43420	14500	28819	28935	43970	43970					0.019890759522922963
TPEPRSGSPTD	11	Unmodified	_TPEPRSGSPTD_					0	0	0			REV__ENST00000592763.5_1_19:10787980-10789791:+|nuORF	REV__ENST00000592763.5_1_19:10787980-10789791:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.2698364257812	2	572.267467	1142.52038	1.6464	0.00094215	2.5724	0.0014721	4.2188	0.0024143	572.2687522214842	39.941	0.23689	39.941	39.867	40.104	0					11	5	3	0	0	0	0.62108	1	15825	15825		35.152	16.89	1	156350	+		43421	20540	28820	28936	43971	43971					-0.04517848500927357
TPEVYKVL	8	Unmodified	_TPEVYKVL_					0	0	0			REV__ENST00000468415.6_1_3:58739536-58855213:-|nuORF	REV__ENST00000468415.6_1_3:58739536-58855213:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7742004394531	2	474.773668	947.532783	0.61674	0.00029281	1.0379	0.00049277	1.6546	0.00078558	474.7738068253246	35.986	0.29541	35.986	35.853	36.148	0					28	9	4	0	0	0	0.58597	1	13995	13995		51.335	7.2187	1	316520	+		43422	19441	28821	28937	43972	43972					0.056918397000458754
TPFAAYPFP	9	Unmodified	_TPFAAYPFP_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-5|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-5|KIRREL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.75286865234375	2	505.752736	1009.49092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.113	1	31.113	30.613	31.613	0								0	0	0	0.34228	1	11293	11293		26.796	0.10319	1		+		43423	14463	28822	28938	43973	43973					-0.013447159884890425
TPFKGGTLF	9	Unmodified	_TPFKGGTLF_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.26580810546875	2	484.26601	966.517468	0.66702	0.00032302	-0.59627	-0.00028875	0.070755	3.4264E-05	484.26580254919566	41.612	0.26527	41.612	41.454	41.719	0					23	10	3	0	0	0	0.15163	1	16335	16335		67.494	17.469	1	281760			43424	11500	28823	28939	43974	43974					0.032869729028675465
TPFKGGTLF	9	Unmodified	_TPFKGGTLF_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.2657775878906	2	484.26601	966.517468	-0.26226	-0.000127	0.10886	5.2716E-05	-0.1534	-7.4287E-05	484.2659670827677	41.357	0.21695	41.357	41.249	41.466	0					18	12	2	0	0	0	0.22377	1	14578	14578		58.782	12.83	1	69901			43425	11500	28823	28939	43975	43975					0.032869729028675465
TPFKGGTLF	9	Unmodified	_TPFKGGTLF_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.26568603515625	2	484.26601	966.517468	-0.58395	-0.00028279	0.10846	5.2522E-05	-0.47549	-0.00023026	484.2660057349246	41.535	0.29197	41.535	41.411	41.703	0					16	7	3	0	0	0	0.07136	1	16520	16520		87.696	37.672	1	295790			43426	11500	28823	28939	43976	43976					0.032869729028675465
TPFKGGTLF	9	Unmodified	_TPFKGGTLF_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2659606933594	2	484.26601	966.517468	0.86212	0.0004175	0.4081	0.00019763	1.2702	0.00061513	484.2662714608431	41.56	0.74362	41.56	41.4	42.143	0					45	20	4	0	0	0	0.035062	1	16512	16512		104.06	32.679	1	1367000			43427	11500	28823	28939	43977	43977					0.032869729028675465
TPFQLLRT	8	Unmodified	_TPFQLLRT_					0	0	0		ENST00000590578.5_1_19:44669911-44674228:+|nuORF	ENST00000590578.5_1_19:44669911-44674228:+|nuORF	ENST00000590578.5_1_19:44669911-44674228:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.283935546875	2	488.284734	974.554916	-0.20153	-9.8404E-05	-1.0027	-0.00048963	-1.2043	-0.00058803	488.2844553094534	30.806	0.11804	30.806	30.724	30.842	0					5	3	2	0	0	0	0.66989	1	10543	10543		37.812	0.65241	1	46717			43428	10952	28824	28940	43978	43978					0.06662064168483539
TPFQQPSGY	9	Unmodified	_TPFQQPSGY_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7403564453125	2	512.740357	1023.46616	1.2688	0.00065055	2.5348	0.0012997	3.8036	0.0019503	512.7400042970004	36.588	0.42405	36.588	36.385	36.809	0					23	12	2	0	0	0	0.27123	1	14214	14214		53.089	5.4316	1	229600			43429	4567	28825	28941	43979	43979					-0.04463395861853314
TPFVDPRVY	9	Unmodified	_TPFVDPRVY_					0	0	0		TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant;TNIK|p.E1253Kfs*13|1|0.04|ENSG00000154310|chr3:171066678-171066678|C/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	TNIK|p.V1263Cfs*3|1|0.42|ENSG00000154310|chr3:171066648-171066648|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2880249023438	2	547.287474	1092.5604	0.53348	0.00029197	0.53914	0.00029506	1.0726	0.00058703	547.287832402691	40.401	0.33749	40.401	40.229	40.566	0					14	7	3	0	0	0	0.42902	1	16010	16010		39.253	5.0803	1	215180			43430	5084	28826	28942	43980	43980					0.01781742960270094
TPFVRTPGQ	9	Unmodified	_TPFVRTPGQ_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	334.8511962890625	3	334.85042	1001.52943	3.5379	0.0011847	-0.17923	-6.0016E-05	3.3586	0.0011246	334.85044125030555	19.244	0.52265	19.244	18.839	19.361	0					39	15	3	0	0	0	0.59802	1	4805	4805		22.58	22.58	1	470480	+		43431	21010	28827	28943	43981	43981					0.02872589646040069
TPGGTRIIY	9	Unmodified	_TPGGTRIIY_					0	0	0		ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1;ENSG00000148730|ENST00000373218|EIF4EBP2	ENSG00000243056|ENST00000310331|EIF4EBP3	ENSG00000243056|ENST00000310331|EIF4EBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.2744140625	2	489.274367	976.53418	1.3079	0.00063993	-1.0876	-0.00053215	0.22027	0.00010777	489.27376154059243	30.784	0.23035	30.784	30.687	30.917	0					20	9	4	0	0	0	0.25761	1	9824	9824		54.722	4.6978	1	184200			43432	4847	28828	28944	43982	43982					0.04497473788808293
TPGGTRIIY	9	Unmodified	_TPGGTRIIY_					0	0	0		ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1;ENSG00000148730|ENST00000373218|EIF4EBP2	ENSG00000243056|ENST00000310331|EIF4EBP3	ENSG00000243056|ENST00000310331|EIF4EBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2743835449219	2	489.274367	976.53418	0.4259	0.00020838	-0.016691	-8.1663E-06	0.40921	0.00020021	489.27431146110746	31.061	0.39143	31.061	30.889	31.28	0					18	9	3	0	0	0	0.063171	1	11237	11237		90.601	19.223	1	1278600			43433	4847	28828	28944	43983	43983					0.04497473788808293
TPGGTRIIY	9	Unmodified	_TPGGTRIIY_					0	0	0		ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1;ENSG00000148730|ENST00000373218|EIF4EBP2	ENSG00000243056|ENST00000310331|EIF4EBP3	ENSG00000243056|ENST00000310331|EIF4EBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.27423095703125	2	489.274367	976.53418	3.5012	0.0017131	-2.9527	-0.0014447	0.54858	0.0002684	489.27300209721983	30.827	0.24708	30.827	30.719	30.967	0					17	8	3	0	0	0	0.11898	1	10152	10152		75.043	21.692	1	193190			43434	4847	28828	28944	43984	43984					0.04497473788808293
TPGGTRIIY	9	Unmodified	_TPGGTRIIY_					0	0	0		ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1;ENSG00000148730|ENST00000373218|EIF4EBP2	ENSG00000243056|ENST00000310331|EIF4EBP3	ENSG00000243056|ENST00000310331|EIF4EBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2740783691406	2	489.274367	976.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.796	1	30.796	30.296	31.296	0								0	0	0	0.19847	1	10529	10529		51.193	5.2407	1				43435	4847	28828	28944	43985	43985					0.04497473788808293
TPGGTRIIY	9	Unmodified	_TPGGTRIIY_					0	0	0		ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1;ENSG00000148730|ENST00000373218|EIF4EBP2	ENSG00000243056|ENST00000310331|EIF4EBP3	ENSG00000243056|ENST00000310331|EIF4EBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.274169921875	2	489.274367	976.53418	-0.51849	-0.00025369	1.8342	0.00089745	1.3157	0.00064376	489.2753954209727	31.002	0.35968	31.002	30.881	31.241	0					18	7	4	0	0	0	0.15163	1	11545	11545		67.494	1.5962	1	576350			43436	4847	28828	28944	43986	43986					0.04497473788808293
TPGIQTASL	9	Unmodified	_TPGIQTASL_					0	0	0		ENSG00000152254|ENST00000375363|G6PC2	ENSG00000152254|ENST00000375363|G6PC2	ENSG00000152254|ENST00000375363|G6PC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2449035644531	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.561	1	39.561	39.061	40.061	0								0	0	0	0.24544	1	15644	15644		44.377	0	1				43437	5005	28829	28945	43987	43987					0.028217921435157223
TPGPELQR	8	Unmodified	_TPGPELQR_					0	0	0		ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.2428894042969	2	449.243067	896.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.944	1	22.944	22.444	23.444	0								0	0	0	1.7419	1	7707	7707		68.787	7.8149	1				43438	1968	28830	28946	43988	43988					0.019203277206202074
TPGPREVL	8	Unmodified	_TPGPREVL_					0	0	0		ENST00000220062.8_1_15:65345900-65346110:-|nuORF	ENST00000220062.8_1_15:65345900-65346110:-|nuORF	ENST00000220062.8_1_15:65345900-65346110:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.74749755859375	2	434.747985	867.481417	-0.43419	-0.00018876	-0.50138	-0.00021797	-0.93557	-0.00040674	434.74783195948834	26.922	0.29402	26.922	26.792	27.086	0					16	7	3	0	0	0	0.59411	1	9334	9334		50.025	0	1	895150			43439	8175	28831	28947	43989	43989					0.0423751572599258
TPGPRSAPGA	10	Unmodified	_TPGPRSAPGA_					0	0	0		ENST00000562622.5_1_16:58163037-58163166:-|nuORF	ENST00000562622.5_1_16:58163037-58163166:-|nuORF	ENST00000562622.5_1_16:58163037-58163166:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.74169921875	2	455.740691	909.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.429	1	12.429	11.929	12.929	0								0	0	0	0.39244	1	2613	2613		32.812	3.6424	1				43440	10723	28832	28948	43990	43990					0.008474435778452971
TPGQGWHRW	9	Unmodified	_TPGQGWHRW_					0	0	0			REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|232|1|anti-sense	REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|232|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.275146484375	2	562.772857	1123.53116	1.8648	0.0010495	-3.9545	-0.0022255	-2.0897	-0.001176	562.7700617911319	26.436	0.66034	26.436	26.067	26.727	0					25	10	4	0	0	0	0.54267	1	9419	9419		27.882	1.1893	1	1163100	+		43441	20826	28833	28949	43991	43991					-0.025663565453669435
TPGSELLI	8	Unmodified	_TPGSELLI_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.2384948730469	2	415.236919	828.459284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.87	1	30.87	30.37	31.37	0								0	0	0	1.7419	1	10181	10181		39.021	9.18	1				43442	7501	28834	28950	43992	43992					0.03819291257570967
TPGTCATKSCC	11	Carbamidomethyl (C)	_TPGTCATKSC(Carbamidomethyl (C))C_	TPGTCATKSC(0.5)C(0.5)		TPGTC(-32)ATKSC(0)C(0)		0	1	0		CNTFR|p.N60Tfs*86|1|0.05|ENSG00000122756|chr9:34564739-34564740|-/TCCTG|frameshift_variant	CNTFR|p.N60Tfs*86|1|0.05|ENSG00000122756|chr9:34564739-34564740|-/TCCTG|frameshift_variant	CNTFR|p.N60Tfs*86|1|0.05|ENSG00000122756|chr9:34564739-34564740|-/TCCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.7279663085938	2	564.727751	1127.44095	3.4712	0.0019603	-4.2028	-0.0023734	-0.73153	-0.00041311	564.7259606316373	16.474	0.26686	16.474	16.367	16.634	0					23	5	6	0	0	0	0.37008	1	4556	4556		54.776	7.119	3	6975400			43443	574	28835	28951	43993	43993	17;18				-0.11767278042589169
TPHDFIEHF	9	Unmodified	_TPHDFIEHF_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.513671875	3	381.513696	1141.51926	0.62928	0.00024008	-0.7523	-0.00028701	-0.12303	-4.6937E-05	381.5134885193256	36.871	0.60194	36.871	36.713	37.315	0					22	12	3	0	0	0	0.18605	1	14381	14381		79.713	26.116	1	357190			43444	2612	28836	28952	43994	43994					-0.045840180791856255
TPHFTAVLV	9	Unmodified	_TPHFTAVLV_					0	0	0			REV__EML2|p.G237Afs*3|1|0.47|ENSG00000125746|chr19:45626736-45626736|C/-|frameshift_variant	REV__EML2|p.G237Afs*3|1|0.47|ENSG00000125746|chr19:45626736-45626736|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.7772521972656	2	492.779285	983.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.853	1	15.853	15.353	16.353	0								0	0	0	0.3304	1	3636	3636		29.15	2.3535	1		+		43445	12795	28837	28953	43995	43995					0.05158661794200725
TPHSYIDTY	9	Unmodified	_TPHSYIDTY_					0	0	0		ENST00000491838.5_1_21:42598231-42618026:+|nuORF;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.751220703125	2	548.750921	1095.48729	1.253	0.00068758	-0.36027	-0.0001977	0.89273	0.00048989	548.7505773306119	31.622	0.34616	31.622	31.53	31.876	0					33	15	3	0	0	0	0.20551	1	10165	10165		60.972	20.194	1	489410			43446	6887	28838	28954	43996	43996					-0.05663430552999671
TPHSYIDTY	9	Unmodified	_TPHSYIDTY_					0	0	0		ENST00000491838.5_1_21:42598231-42618026:+|nuORF;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7516479492188	2	548.750921	1095.48729	0.50206	0.0002755	0.43956	0.00024121	0.94162	0.00051671	548.7510721739617	31.896	0.61758	31.896	31.764	32.381	0					39	15	4	0	0	0	0.0090225	1	11642	11642		143.11	58.191	1	2297400			43447	6887	28838	28954	43997	43997					-0.05663430552999671
TPHSYIDTY	9	Unmodified	_TPHSYIDTY_					0	0	0		ENST00000491838.5_1_21:42598231-42618026:+|nuORF;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7516479492188	2	548.750921	1095.48729	0.27021	0.00014828	0.62745	0.00034431	0.89766	0.00049259	548.7512917119669	31.885	0.39422	31.885	31.78	32.174	0					20	8	4	0	0	0	0.036372	1	12055	12055		102.77	28.518	1	1029000			43448	6887	28838	28954	43998	43998					-0.05663430552999671
TPHVAPVM	8	Unmodified	_TPHVAPVM_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;PGAP1|p.K353Sfs*13|1|0.37|ENSG00000197121|chr2:196892376-196892377|TT/-|frameshift_variant	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.2255554199219	2	426.225831	850.437109	0.37142	0.00015831	-0.94195	-0.00040148	-0.57052	-0.00024317	426.22549437408225	29.152	0.29136	29.152	28.991	29.282	0					11	6	2	0	0	0	0.67475	1	10768	10768		37.028	1.8278	1	107890			43449	7429	28839	28955	43999	43999					0.005907883081590626
TPIASAASI	9	Unmodified	_TPIASAASI_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1;SP1|p.A513V|1|0.48|ENSG00000185591|chr12:53383485-53383485|C/T|missense_variant	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.7343444824219	2	415.734543	829.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.869	1	30.869	30.369	31.369	0								0	0	0	0.23459	1	9877	9877		45.952	0	1				43450	7089	28840	28956	44000	44000					0.03298407114800739
TPIASAASI	9	Unmodified	_TPIASAASI_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1;SP1|p.A513V|1|0.48|ENSG00000185591|chr12:53383485-53383485|C/T|missense_variant	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	415.734375	2	415.734543	829.454533	-0.061562	-2.5593E-05	0.35386	0.00014711	0.2923	0.00012152	415.7346258290378	30.907	0.25029	30.907	30.793	31.043	0					11	6	2	0	0	0	0.18605	1	10574	10574		63.306	2.3343	1	92495			43451	7089	28840	28956	44001	44001					0.03298407114800739
TPIEGMLSH	9	Unmodified	_TPIEGMLSH_					0	0	0		PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant;nc|ENSG00000170515|Q9UQ80-2|PA2G4;PA2G4|p.K373Efs*19|1|0.43|ENSG00000170515|chr12:56111517-56111518|-/A|frameshift_variant;ENSG00000170515|ENST00000303305|PA2G4	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2464904785156	2	492.744585	983.474617	0.78387	0.00038625	-2.4272	-0.001196	-1.6433	-0.00080973	492.74414784996947	35.642	0.38535	35.642	35.416	35.801	0					23	10	3	0	0	0	0.099922	1	13361	13361		79.451	8.1553	1	278990			43452	6241	28841	28957	44002	44002					-0.017781652168764595
TPIEGMLSH	9	Unmodified	_TPIEGMLSH_					0	0	0		PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant;nc|ENSG00000170515|Q9UQ80-2|PA2G4;PA2G4|p.K373Efs*19|1|0.43|ENSG00000170515|chr12:56111517-56111518|-/A|frameshift_variant;ENSG00000170515|ENST00000303305|PA2G4	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7441711425781	2	492.744585	983.474617	3.4563	0.001703	-3.0417	-0.0014988	0.41459	0.00020429	492.7432091872943	35.435	0.11695	35.435	35.373	35.49	0					6	5	2	0	0	0	0.26904	1	12001	12001		53.351	10.877	1	31616			43453	6241	28841	28957	44003	44003					-0.017781652168764595
TPIEGMLSH	9	Unmodified	_TPIEGMLSH_					0	0	0		PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant;nc|ENSG00000170515|Q9UQ80-2|PA2G4;PA2G4|p.K373Efs*19|1|0.43|ENSG00000170515|chr12:56111517-56111518|-/A|frameshift_variant;ENSG00000170515|ENST00000303305|PA2G4	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7441101074219	2	492.744585	983.474617	-0.054664	-2.6935E-05	-0.31	-0.00015275	-0.36467	-0.00017969	492.7447521781017	35.62	0.34232	35.62	35.433	35.775	0					23	9	3	0	0	0	0.030949	1	13795	13795		108.09	41.658	1	208540			43454	6241	28841	28957	44004	44004					-0.017781652168764595
TPIEGMLSH	9	Unmodified	_TPIEGMLSH_					0	0	0		PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant;nc|ENSG00000170515|Q9UQ80-2|PA2G4;PA2G4|p.K373Efs*19|1|0.43|ENSG00000170515|chr12:56111517-56111518|-/A|frameshift_variant;ENSG00000170515|ENST00000303305|PA2G4	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7444763183594	2	492.744585	983.474617	-0.5992	-0.00029525	-0.15261	-7.5197E-05	-0.75181	-0.00037045	492.7450778482593	35.559	0.52318	35.559	35.229	35.752	0					22	10	3	0	0	0	0.01768	1	13717	13717		125.81	57.027	1	431180			43455	6241	28841	28957	44005	44005					-0.017781652168764595
TPIGTSASPLQ	11	Unmodified	_TPIGTSASPLQ_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8095092773438	2	536.287671	1070.56079	0.19411	0.0001041	-0.26127	-0.00014012	-0.067156	-3.6015E-05	536.2877856408788	17.536	0.20385	17.536	17.415	17.619	0					7	5	2	0	0	0	0.67178	1	4918	4918		30.318	4.7437	1	102260	+		43456	13080	28842	28958	44006	44006					0.028331178894632103
TPIHEPAL	8	Unmodified	_TPIHEPAL_					0	0	0			REV__nc|ENSG00000151067|Q13936-15|CACNA1C	REV__nc|ENSG00000151067|Q13936-15|CACNA1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2430114746094	2	439.242535	876.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.57	1	27.57	27.07	28.07	0								0	0	0	1.7419	1	9037	9037		31.955	2.8053	1		+		43457	21063	28843	28959	44007	44007					0.027341133516983973
TPIINPQPK	9	Unmodified	_TPIINPQPK_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341491699219	3	336.53432	1006.58113	0.24153	8.1282E-05	-0.55341	-0.00018624	-0.31188	-0.00010496	336.53413821165856	32.008	0.56699	32.008	31.646	32.213	0					35	24	2	0	0	0	0.51817	1	10369	10369		30.318	7.2752	1	120210	+		43458	12957	28844	28960	44008	44008					0.07810333339944009
TPIINPQPK	9	Unmodified	_TPIINPQPK_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.873	1	35.873	35.373	36.373	0								0	0	0	0.35899	1	12808	12808		17.468	4.014	1		+		43459	12957	28844	28960	44009	44009					0.07810333339944009
TPIKDGILY	9	Unmodified	_TPIKDGILY_					0	0	0		ENST00000512660.1_1_5:176936187-176936779:-|nuORF;ENST00000502380.1_1_5:176936187-176937359:-|nuORF;nc|ENSG00000146094|Q7L591-4|DOK3;nc|ENSG00000146094|Q7L591-3|DOK3;ENSG00000146094|ENST00000510898|DOK3;nc|ENSG00000146094|Q7L591|DOK3	ENST00000512660.1_1_5:176936187-176936779:-|nuORF	ENST00000512660.1_1_5:176936187-176936779:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.292236328125	2	510.292225	1018.5699	1.3718	0.00070002	-0.87124	-0.00044459	0.50057	0.00025544	510.2917581196208	37.746	0.443	37.746	37.596	38.039	0					23	9	4	0	0	0	0.095583	1	14770	14770		80.455	6.4799	1	2849600			43460	4711	28845	28961	44010	44010					0.06135511245804537
TPISEHAVF	9	Unmodified	_TPISEHAVF_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7591247558594	2	500.758549	999.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.357	1	35.357	34.857	35.857	0								0	0	0	0.10121	1	13643	13643		71.296	30.723	1				43461	3867	28846	28962	44011	44011					0.00277481034856919
TPIYEGRTY	9	Unmodified	_TPIYEGRTY_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2757568359375	2	550.274564	1098.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.097	1	30.097	29.597	30.597	0								0	0	0	0.36056	1	11216	11216		22.58	0.61977	1				43462	11564	28847	28963	44012	44012					-0.010751512819979325
TPKGKGRAAL	10	Unmodified	_TPKGKGRAAL_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3;E2F3|p.T177Nfs*4|1|0.31|ENSG00000112242|chr6:20481223-20481224|-/A|frameshift_variant;E2F3|p.T177Rfs*18|1|0.28|ENSG00000112242|chr6:20481224-20481224|A/-|frameshift_variant	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.8089599609375	2	499.808908	997.603263	0.16145	8.0692E-05	0.071144	3.5558E-05	0.23259	0.00011625	499.80898157480027	25.435	0.10221	25.435	25.386	25.488	0					4	2	2	0	0	0	0.61238	1	8098	8098		14.865	0	1	206130			43463	2725	28848	28964	44013	44013					0.10436557808372982
TPKGKGRAAL	10	Unmodified	_TPKGKGRAAL_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3;E2F3|p.T177Nfs*4|1|0.31|ENSG00000112242|chr6:20481223-20481224|-/A|frameshift_variant;E2F3|p.T177Rfs*18|1|0.28|ENSG00000112242|chr6:20481224-20481224|A/-|frameshift_variant	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.8086853027344	2	499.808908	997.603263	1.0778	0.00053868	-2.0583	-0.0010288	-0.98058	-0.0004901	499.80810192198015	25.556	0.16797	25.556	25.448	25.616	0					11	3	4	0	0	0	0.35046	1	8953	8953		32.812	2.3088	1	1254400			43464	2725	28848	28964	44014	44014					0.10436557808372982
TPKNLDYK	8	Unmodified	_TPKNLDYK_					0	0	0		ENST00000486363.1_1_21:33641984-33642827:-|nuORF;ENSG00000159055|ENST00000290130|MIS18A	ENST00000486363.1_1_21:33641984-33642827:-|nuORF	ENST00000486363.1_1_21:33641984-33642827:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2645568847656	2	489.766374	977.518196	-0.071417	-3.4978E-05	-1.1166	-0.00054688	-1.188	-0.00058185	489.7670055763543	26.094	0.40802	26.094	25.885	26.293	0					20	8	4	0	0	0	0.63077	1	9377	9377		44.117	3.3386	1	471270			43465	5294	28849	28965	44015	44015					0.02853767551891906
TPKPPPSIAP	10	Unmodified	_TPKPPPSIAP_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7919616699219	2	502.792392	1003.57023	-0.89921	-0.00045211	0.52671	0.00026482	-0.3725	-0.00018729	502.79259488227484	34.288	0.34202	34.288	34.183	34.525	0					38	15	3	0	0	0	0.50881	1	11535	11535		44.377	7.2181	1	1021600	+		43466	13421	28850	28966	44016	44016					0.06858930965654508
TPKPTRHIR	9	Unmodified	_TPKPTRHIR_					0	0	0		LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant;ENSG00000089116|ENST00000261731|LHX5;ENSG00000273706|ENST00000614239|LHX1	LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant	LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.3303833007812	2	553.333082	1104.65161	-0.016306	-9.0228E-06	-2.0822	-0.0011522	-2.0985	-0.0011612	553.8339365613925	54.046	0.23817	54.046	53.958	54.196	0					18	15	2	0	0	0	0.59802	1	16426	16426		21.96	1.013	1	33940			43467	1800	28851	28967	44017	44017					0.10347051448275124
TPKQKKRPQRR	11	Unmodified	_TPKQKKRPQRR_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-5|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-5|CC2D2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.9645690917969	3	474.963659	1421.86915	2.3305	0.0011069	-0.771	-0.0003662	1.5595	0.00074071	474.96330280353294	24.604	0.25925	24.604	24.496	24.756	0					16	5	4	0	0	0	0.80982	1	8519	8519		12.957	0.52465	1	1020000	+		43468	20926	28852	28968	44018	44018					0.17508821650858408
TPLHDECSL	9	Unmodified	_TPLHDECSL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7315673828125	2	507.731674	1013.4488	-0.029889	-1.5176E-05	-0.34628	-0.00017582	-0.37617	-0.00019099	507.7316368474993	32.701	0.5883	32.701	32.531	33.119	0					38	15	3	0	0	0	0.16524	1	12040	12040		65.803	10.299	1	382870	+		43469	14129	28853	28969	44019	44019					-0.057390594591765876
TPLHDECSL	9	Unmodified	_TPLHDECSL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.7316589355469	2	507.731674	1013.4488	-0.61348	-0.00031148	0.65109	0.00033058	0.037619	1.9101E-05	507.732133800534	32.528	0.60009	32.528	32.342	32.942	0					58	23	3	0	0	0	0.25109	1	10805	10805		55.504	9.5523	1	284430	+		43470	14129	28853	28969	44020	44020					-0.057390594591765876
TPLHHTWTY	9	Unmodified	_TPLHHTWTY_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF;ENST00000556534.1_1_14:31109012-31122803:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.2825317382812	2	578.282723	1154.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.627	1	21.627	21.127	22.127	0								0	0	0	0.36266	1	5985	5985		21.96	0	1				43471	1866	28854	28970	44021	44021					-0.020200253252369293
TPLHSLCGRA	10	Unmodified	_TPLHSLCGRA_					0	0	0			REV__ENST00000507917.5_1_4:44704555-44704834:-|nuORF	REV__ENST00000507917.5_1_4:44704555-44704834:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.8067016601562	2	527.776751	1053.53895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.419	1	19.419	18.919	19.919	0								0	0	0	0.32041	1	5269	5269		47.657	8.8512	1		+		43472	19848	28855	28971	44022	44022					0.014320346599106415
TPLILPPTT	9	Unmodified	_TPLILPPTT_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	318.19586181640625	3	318.195304	951.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.553	1	45.553	45.053	46.053	0								0	0	0	0.37821	1	14657	14657		12.812	3.6288	1				43473	5494	28856	28972	44023	44023					0.08636412734119858
TPLPGSPL	8	Unmodified	_TPLPGSPL_					0	0	0		ENST00000378598.4_1_1:1849323-1850689:-|nuORF	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	391.22552490234375	2	391.226354	780.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.764	1	44.764	44.264	45.264	0								0	0	0	1.7419	1	15330	15330		37.028	0	1				43474	9073	28857	28973	44024	44024					0.03915325948696591
TPLPTPPVKV	10	Unmodified	_TPLPTPPVKV_					0	0	0			REV__nc|ENSG00000084234|Q06481-4|APLP2	REV__nc|ENSG00000084234|Q06481-4|APLP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.21826171875	3	350.21822	1047.63283	0.49677	0.00017398	-0.42411	-0.00014853	0.072657	2.5446E-05	350.2180397946387	32.051	0.25379	32.051	31.928	32.181	0					18	6	3	0	0	0	0.65213	1	11736	11736		32.751	6.6872	1	814840	+		43475	20944	28858	28974	44025	44025					0.11092077033845271
TPLSTDSCTSR	11	Unmodified	_TPLSTDSCTSR_					0	0	0			REV__TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant	REV__TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.2699584960938	2	584.269152	1166.52375	3.2182	0.0018803	-1.7234	-0.001007	1.4947	0.00087333	584.2682996976908	11.639	0.09984	11.639	11.566	11.665	0					5	3	2	0	0	0	0.80429	1	2305	2305		14.137	0	1	201500	+		43476	22239	28859	28975	44026	44026					-0.052849217185894304
TPMFVVKAY	9	Unmodified	_TPMFVVKAY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2850952148438	2	528.283346	1054.55214	2.1956	0.0011599	-1.8464	-0.00097543	0.34916	0.00018445	528.2825665081261	41.327	0.23138	41.327	41.207	41.438	0					22	11	3	0	0	0	0.037569	1	15701	15701		101.6	43.789	1	162520			43477	6014	28860	28976	44027	44027					0.027044727193015206
TPMFVVKAY	9	Unmodified	_TPMFVVKAY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2847900390625	2	528.283346	1054.55214	0.91784	0.00048488	1.7718	0.00093599	2.6896	0.0014209	528.7859592718369	41.325	0.22263	41.325	41.225	41.448	0					17	10	2	0	0	0	0.07136	1	16226	16226		87.696	37.672	1	93493			43478	6014	28860	28976	44028	44028					0.027044727193015206
TPMFVVKAY	9	Unmodified	_TPMFVVKAY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.283203125	2	528.283346	1054.55214	0.70059	0.00037011	-0.24061	-0.00012711	0.45998	0.000243	528.2834754618234	41.249	0.22838	41.249	41.159	41.387	0					13	5	3	0	0	0	0.028876	1	16385	16385		110.12	65.589	1	341040			43479	6014	28860	28976	44029	44029					0.027044727193015206
TPMFVVKAY	9	Unmodified	_TPMFVVKAY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2839965820312	2	528.283346	1054.55214	1.6301	0.00086115	-0.89937	-0.00047512	0.73073	0.00038603	528.2831932724795	41.247	0.35424	41.247	41.016	41.371	0					23	8	4	0	0	0	0.0406	1	16399	16399		98.629	55.765	1	185110			43480	6014	28860	28976	44030	44030					0.027044727193015206
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2550048828125	2	545.253305	1088.49206	1.7643	0.00096198	-0.60259	-0.00032856	1.1617	0.00063341	545.2530465974638	22.534	0.13449	22.534	22.47	22.605	0					7	4	2	0	0	0	0.34452	1	6382	6382		46.457	22.254	1	108340			43481	7015	28861	28977	44031	44031					-0.04864869681887285
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2532958984375	2	545.253305	1088.49206	1.8677	0.0010184	-1.5998	-0.00087232	0.26786	0.00014605	545.2523960150911	22.85	0.21399	22.85	22.766	22.98	0					12	5	3	0	0	0	0.047855	1	7492	7492		96.034	44.841	1	709700			43482	7015	28861	28977	44032	44032					-0.04864869681887285
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.2533569335938	2	545.253305	1088.49206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.653	1	22.653	22.153	23.153	0								0	0	0	0.30009	1	6784	6784		35.152	8.4591	1				43483	7015	28861	28977	44033	44033					-0.04864869681887285
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2537231445312	2	545.253305	1088.49206	0.57202	0.0003119	0.0082808	4.5152E-06	0.5803	0.00031641	545.2533595007336	22.79	0.16744	22.79	22.688	22.855	0					7	3	3	0	0	0	0.046074	1	7624	7624		96.665	58.854	1	412530			43484	7015	28861	28977	44034	44034					-0.04864869681887285
TPPAPSPQTL	10	Unmodified	_TPPAPSPQTL_					0	0	0		ENST00000327367.8_1_15:67483135-67483486:+|nuORF	ENST00000327367.8_1_15:67483135-67483486:+|nuORF	ENST00000327367.8_1_15:67483135-67483486:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.77264404296875	2	504.771657	1007.52876	-2.003	-0.0010111	3.7745	0.0019053	1.7715	0.00089423	504.77336208840444	46.12	0.054134	46.12	46.078	46.132	0					5	3	2	0	0	0	0.54861	1	15611	15611		40.058	5.8856	1	43291			43485	8656	28862	28978	44035	44035					0.025297502063381216
TPPASDLLK	9	Unmodified	_TPPASDLLK_					0	0	0		tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2684631347656	2	471.26875	940.522947	-0.41912	-0.00019752	0.32143	0.00015148	-0.097684	-4.6035E-05	471.2687232860157	35.031	0.86126	35.031	34.58	35.442	0					47	39	2	0	0	0	0.53083	1	11357	11357		29.15	0.89528	1	84201			43486	22908	28863	28979	44036	44036					0.05030651694664812
TPPEALASL	9	Unmodified	_TPPEALASL_					0	0	0		ENST00000539421.1_1_17:5983889-5983934:+|nuORF	ENST00000539421.1_1_17:5983889-5983934:+|nuORF	ENST00000539421.1_1_17:5983889-5983934:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.74737548828125	2	449.74765	897.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.17	1	36.17	35.67	36.67	0								0	0	0	0.14517	1	12934	12934		60.972	15.02	1				43487	10523	28864	28980	44037	44037					0.027906762862812684
TPPLASGAH	9	Unmodified	_TPPLASGAH_					0	0	0			REV__ENST00000450472.1_1_21:30595147-30595570:+|nuORF	REV__ENST00000450472.1_1_21:30595147-30595570:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.7241516113281	2	425.72451	849.434466	-1.0601	-0.0004513	0.78245	0.00033311	-0.27763	-0.00011819	425.72481875868874	24.781	0.29587	24.781	24.677	24.973	0					13	10	2	0	0	0	0.43426	1	7621	7621		38.806	14.603	1	76805	+		43488	19306	28865	28981	44038	44038					0.003726561748635504
TPPMDRITY	9	Oxidation (M)	_TPPM(Oxidation (M))DRITY_		TPPM(1)DRITY		TPPM(41)DRITY	0	0	1		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.76953125	2	555.268424	1108.5223	-1.0587	-0.00058785	-0.1873	-0.000104	-1.246	-0.00069185	555.2680819082766	36.892	0.17098	36.892	36.825	36.996	0					15	7	3	0	0	0	0.41113	1	13195	13195		40.778	7.9657	1	108520			43489	4422	28866	28982	44039	44039		181			-0.027625110166809463
TPPMQVLDEP	10	Unmodified	_TPPMQVLDEP_					0	0	0			REV__ENSG00000157613|ENST00000621158|CREB3L1	REV__ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7758178710938	2	563.776082	1125.53761	0.11348	6.3979E-05	-1.2191	-0.0006873	-1.1056	-0.00062333	563.7754167067365	13.276	0.15812	13.276	13.218	13.376	0					7	3	3	0	0	0	0.52707	1	3207	3207		42.396	6.7778	1	329930	+		43490	15662	28867	28983	44040	44040					-0.02013644219505295
TPPMQVLDEP	10	Unmodified	_TPPMQVLDEP_					0	0	0			REV__ENSG00000157613|ENST00000621158|CREB3L1	REV__ENSG00000157613|ENST00000621158|CREB3L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.7747192382812	2	563.776082	1125.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.049	1	13.049	12.549	13.549	0								0	0	0	0.39665	1	2591	2591		31.53	1.0262	1		+		43491	15662	28867	28983	44041	44041					-0.02013644219505295
TPPPPVPPPR	10	Unmodified	_TPPPPVPPPR_					0	0	0			REV__nc|ENSG00000102890|Q96BJ8-2|ELMO3	REV__nc|ENSG00000102890|Q96BJ8-2|ELMO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.8048095703125	2	527.805834	1053.59712	0.54929	0.00028992	-0.29972	-0.00015819	0.24957	0.00013172	527.8056724239308	32.885	0.19234	32.885	32.773	32.965	0					17	7	3	0	0	0	0.54197	1	10648	10648		40.778	6.6056	1	131280	+		43492	13651	28868	28984	44042	44042					0.07246039576853036
TPPPTATS	8	Unmodified	_TPPPTATS_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	386.1977233886719	2	386.197793	770.381034	0.85307	0.00032945	-1.3513	-0.00052188	-0.49826	-0.00019243	386.19718504093015	18.134	0.45639	18.134	17.896	18.353	0					19	10	4	0	0	0	0.64096	1	5259	5259		42.474	0	1	1296500	+		43493	15193	28869	28985	44043	44043					-0.01334141327663474
TPPTQLQIPG	10	Unmodified	_TPPTQLQIPG_					0	0	0			REV__DMBT1|p.R2407Tfs*79|1|0.41|ENSG00000187908|chr10:122643366-122643367|-/C|frameshift_variant	REV__DMBT1|p.R2407Tfs*79|1|0.41|ENSG00000187908|chr10:122643366-122643367|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	351.1975402832031	3	351.197596	1050.57096	-0.076923	-2.7015E-05	-0.06438	-2.261E-05	-0.1413	-4.9625E-05	351.19756521139664	18.984	0.10478	18.984	18.928	19.033	0					6	2	3	0	0	0	0.536	1	5076	5076		41.427	3.6151	1	294640	+		43494	12715	28870	28986	44044	44044					0.04769725614710296
TPQARLFDATK	11	Unmodified	_TPQARLFDATK_					0	0	0			REV__ENST00000395255.7_1_10:64239676-64239931:+|nuORF	REV__ENST00000395255.7_1_10:64239676-64239931:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	624.3410034179688	2	624.340769	1246.66699	1.2963	0.00080933	-0.91631	-0.00057209	0.37999	0.00023725	624.3399741970953	25.746	0.3981	25.746	25.636	26.034	0					20	6	4	0	0	0	0.11572	1	9163	9163		85.862	12.983	1	953300	+		43495	18873	28871	28987	44045	44045					0.05351873454787892
TPQELPGPK	9	Unmodified	_TPQELPGPK_					0	0	0		ENST00000353159.6_2_9:33461728-33461932:-|nuORF	ENST00000353159.6_2_9:33461728-33461932:-|nuORF	ENST00000353159.6_2_9:33461728-33461932:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7665100097656	2	483.766374	965.518196	-0.60691	-0.0002936	0.97852	0.00047337	0.3716	0.00017977	483.7667410284472	14.401	0.14926	14.401	14.301	14.45	0					5	3	2	0	0	0	0.47038	1	3738	3738		35.618	0	1	191210			43496	8778	28872	28988	44046	44046					0.03405767551907957
TPQFQLRPS	9	Unmodified	_TPQFQLRPS_					0	0	0		KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant;ENSG00000203786|ENST00000606109|KPRP	KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant	KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2925415039062	2	537.290548	1072.56654	2.0979	0.0011272	0.72887	0.00039161	2.8268	0.0015188	537.2910311080071	18.392	0.8243	18.392	17.992	18.816	0					70	19	6	0	0	0	0.090954	1	5295	5295		75.043	20.267	1	37974000			43497	7658	28873	28989	44047	44047					0.033162611917987306
TPQFQLRPS	9	Unmodified	_TPQFQLRPS_					0	0	0		KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant;ENSG00000203786|ENST00000606109|KPRP	KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant	KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2923583984375	2	537.290548	1072.56654	1.9764	0.0010619	0.85593	0.00045988	2.8324	0.0015218	537.2910553616143	18.314	0.85313	18.314	17.915	18.768	0					61	17	5	0	0	0	0.063171	1	5395	5395		74.255	0	1	35685000			43498	7658	28873	28989	44048	44048					0.033162611917987306
TPQGGIVVY	9	Unmodified	_TPQGGIVVY_					0	0	0		KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.25537109375	2	467.255643	932.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.38	1	40.38	39.88	40.88	0								0	0	0	0.24724	1	15391	15391		44.117	3.5442	1				43499	11259	28874	28990	44049	44049					0.02778382523183609
TPQGGIVVY	9	Unmodified	_TPQGGIVVY_					0	0	0		KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.25567626953125	2	467.255643	932.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.316	1	40.316	39.816	40.816	0								0	0	0	0.29774	1	15885	15885		35.618	2.1027	1				43500	11259	28874	28990	44050	44050					0.02778382523183609
TPQHGVLPP	9	Unmodified	_TPQHGVLPP_					0	0	0		ENST00000538936.6_2_17:79862156-79862276:-|nuORF	ENST00000538936.6_2_17:79862156-79862276:-|nuORF	ENST00000538936.6_2_17:79862156-79862276:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2621154785156	2	473.261259	944.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.611	1	31.611	31.111	32.111	0								0	0	0	0.28996	1	10905	10905		37.159	8.0096	1				43501	10517	28875	28991	44051	44051					0.033492046173250856
TPQTWYQR	8	Unmodified	_TPQTWYQR_					0	0	0		ENST00000513638.5_1_1:89873259-89875899:+|nuORF	ENST00000513638.5_1_1:89873259-89875899:+|nuORF	ENST00000513638.5_1_1:89873259-89875899:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.2669677734375	2	540.267073	1078.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.426	1	41.426	40.926	41.926	0								0	0	0	1.7419	1	16287	16287		45.952	2.3259	1				43502	10249	28876	28992	44052	44052					-0.01652598359351032
TPRDRPRH	8	Unmodified	_TPRDRPRH_					0	0	0		RARA|p.G429Vfs*214|1|0.12|ENSG00000131759|chr17:40356118-40356118|G/-|frameshift_variant	RARA|p.G429Vfs*214|1|0.12|ENSG00000131759|chr17:40356118-40356118|G/-|frameshift_variant	RARA|p.G429Vfs*214|1|0.12|ENSG00000131759|chr17:40356118-40356118|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.783447265625	2	517.783756	1033.55296	0.4065	0.00021048	-0.78085	-0.00040431	-0.37435	-0.00019383	517.7834289074112	22.269	0.28699	22.269	22.183	22.47	0					11	8	2	0	0	0	0.61938	1	6276	6276		45.952	45.952	1	179430			43503	12000	28877	28993	44053	44053					0.03752448203226777
TPREKAHY	8	Unmodified	_TPREKAHY_					0	0	0		LMOD2|p.K405Qfs*119|1|0.49|ENSG00000170807|chr7:123662794-123662795|-/C|frameshift_variant	LMOD2|p.K405Qfs*119|1|0.49|ENSG00000170807|chr7:123662794-123662795|-/C|frameshift_variant	LMOD2|p.K405Qfs*119|1|0.49|ENSG00000170807|chr7:123662794-123662795|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.26153564453125	2	501.261791	1000.50903	0.67611	0.00033891	-1.6223	-0.00081321	-0.94621	-0.0004743	501.26084881467995	25.379	0.39398	25.379	25.242	25.636	0					18	9	3	0	0	0	0.66372	1	8655	8655		38.806	3.1879	1	1153000			43504	11318	28878	28994	44054	44054					0.008794189862214807
TPRIGSIGL	9	Unmodified	_TPRIGSIGL_					0	0	0			REV__ENST00000484069.1_1_X:64743438-64749476:-|nuORF	REV__ENST00000484069.1_1_X:64743438-64749476:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2766418457031	2	457.276909	912.539266	-0.43544	-0.00019912	-0.24654	-0.00011274	-0.68198	-0.00031185	457.27684600673	21.901	0.21451	21.901	21.789	22.004	0					14	4	4	0	0	0	0.49003	1	7216	7216		33.516	0	1	932540	+		43505	12811	28879	28995	44055	44055					0.07949777651424483
TPRMASVKLSV	11	Unmodified	_TPRMASVKLSV_					0	0	0		ENST00000426647.2_1_7:32852458-32867019:+|nuORF	ENST00000426647.2_1_7:32852458-32867019:+|nuORF	ENST00000426647.2_1_7:32852458-32867019:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	396.8980407714844	3	396.897152	1187.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.32	1	28.32	27.82	28.82	0								0	0	0	0.45674	1	8833	8833		21.78	0.094677	1				43506	9450	28880	28996	44056	44056					0.08330005588095446
TPRYVTLGL	9	Unmodified	_TPRYVTLGL_					0	0	0			REV__ENSG00000141040|ENST00000395825|ZNF287	REV__ENSG00000141040|ENST00000395825|ZNF287	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.298095703125	2	510.297842	1018.58113	-0.0096217	-4.9099E-06	0.090224	4.6041E-05	0.080602	4.1131E-05	510.2977067245518	26.773	0.40508	26.773	26.564	26.969	0					19	9	3	0	0	0	0.39215	1	9277	9277		42.396	0	1	302320	+		43507	15099	28881	28997	44057	44057					0.07258333339962064
TPSCHLLHK	9	Unmodified	_TPSCHLLHK_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.S709Yfs*25|1|0.07|ENSG00000175054|chr3:142556093-142556094|AA/-|frameshift_variant;ATR|p.S927Qfs*4|1|0.34|ENSG00000175054|chr3:142553254-142553255|-/A|frameshift_variant;ATR|p.N1135*|1|0.36|ENSG00000175054|chr3:142542712-142542713|-/A|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7752685546875	2	518.273844	1034.53313	0.95574	0.00049534	-3.4148	-0.0017698	-2.4591	-0.0012745	518.7743763638914	28.269	0.27113	28.269	28.145	28.416	0					16	6	3	0	0	0	0.49003	1	9359	9359		33.516	0	1	529850			43508	6529	28882	28998	44058	44058					0.017249361482527092
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		ENST00000604759.1_1_14:39684672-39685536:+|nuORF;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	ENST00000604759.1_1_14:39684672-39685536:+|nuORF	ENST00000604759.1_1_14:39684672-39685536:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7584228515625	2	488.758549	975.502546	-0.077817	-3.8034E-05	-0.3431	-0.00016769	-0.42092	-0.00020573	488.7583984822059	29.725	0.26933	29.725	29.565	29.835	0					10	5	2	0	0	0	0.05357	1	11026	11026		94.006	22.711	1	245090			43509	7567	28883	28999	44059	44059					0.013814810348435458
TPSKGVLFY	9	Unmodified	_TPSKGVLFY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.279541015625	2	506.279118	1010.54368	0.8358	0.00042315	-0.35418	-0.00017931	0.48162	0.00024383	506.27884416585215	38.955	0.32263	38.955	38.817	39.139	0					26	12	3	0	0	0	0.12239	1	14788	14788		74.255	5.7703	1	293160			43510	5780	28884	29000	44060	44060					0.038832420743119656
TPSKSVRKA	9	Unmodified	_TPSKSVRKA_					0	0	0		nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.29315185546875	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.731	1	14.731	14.231	15.231	0								0	0	0	0.38667	1	3653	3653		14.865	1.0895	1				43511	6299	28885	29001	44061	44061					0.08424565054417599
TPSPEIVKY	9	Unmodified	_TPSPEIVKY_					0	0	0		ENST00000260604.8_1_2:55870335-55906871:-|nuORF;ENSG00000138035|ENST00000447944|PNPT1	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2827758789062	2	517.281857	1032.54916	0.96077	0.00049699	0.76123	0.00039377	1.722	0.00089076	517.2824061648623	32.25	0.201	32.25	32.142	32.343	0					7	4	2	0	0	0	0.07136	1	12252	12252		87.696	28.914	1	68358			43512	4218	28886	29002	44062	44062					0.03418920866147346
TPSPEIVKY	9	Unmodified	_TPSPEIVKY_					0	0	0		ENST00000260604.8_1_2:55870335-55906871:-|nuORF;ENSG00000138035|ENST00000447944|PNPT1	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2819213867188	2	517.281857	1032.54916	0.218	0.00011277	0.023839	1.2331E-05	0.24184	0.0001251	517.281694520164	32.227	0.16826	32.227	32.17	32.338	0					6	3	2	0	0	0	0.063823	1	12144	12144		90.37	19.074	1	130800			43513	4218	28886	29002	44063	44063					0.03418920866147346
TPSPPEVVY	9	Unmodified	_TPSPPEVVY_					0	0	0		ENST00000555795.1_1_14:75988823-76013011:+|nuORF;ENSG00000156127|ENST00000286639|BATF	ENST00000555795.1_1_14:75988823-76013011:+|nuORF	ENST00000555795.1_1_14:75988823-76013011:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.75384521484375	2	494.752933	987.491313	-0.6444	-0.00031882	0.61279	0.00030318	-0.03161	-1.5639E-05	494.7532877553201	39.76	0.59476	39.76	39.348	39.943	0					21	13	2	0	0	0	0.50461	1	15703	15703		31.955	0	1	114900			43514	5157	28887	29003	44064	44064					-0.0029334105928455756
TPSPPTTTM	9	Unmodified	_TPSPPTTTM_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7237854003906	2	466.723318	931.432083	0.25119	0.00011724	2.2571	0.0010534	2.5083	0.0011707	466.7249248805276	30.598	0.63204	30.598	30.098	30.73	0					20	15	2	0	0	0	0.26904	1	10979	10979		53.351	10.955	1	92076			43515	11716	28888	29004	44065	44065					-0.036375603451233474
TPSPSPSPQ	9	Unmodified	_TPSPSPSPQ_					0	0	0			REV__nc|ENSG00000140464|P29590-11|PML	REV__nc|ENSG00000140464|P29590-11|PML	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2187194824219	2	449.219257	896.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.148	1	16.148	15.648	16.648	0								0	0	0	0.3368	1	3816	3816		27.882	7.4004	1		+		43516	15076	28889	29005	44066	44066					-0.02839371270238189
TPSQPLPTY	9	Unmodified	_TPSQPLPTY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.25921630859375	2	502.258382	1002.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.653	1	36.653	36.153	37.153	0								0	0	0	0.24544	1	12413	12413		44.377	10.205	1				43517	6453	28890	29006	44067	44067					0.0010606131497752358
TPSQPLPTY	9	Unmodified	_TPSQPLPTY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2591247558594	2	502.258382	1002.50221	0.053449	2.6845E-05	0.057697	2.8979E-05	0.11115	5.5824E-05	502.25838878191325	36.882	0.2982	36.882	36.748	37.047	0					22	9	3	0	0	0	0.07136	1	14359	14359		87.696	28.914	1	224240			43518	6453	28890	29006	44068	44068					0.0010606131497752358
TPSQPLPTY	9	Unmodified	_TPSQPLPTY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2583312988281	2	502.258382	1002.50221	-0.27955	-0.00014041	1.1812	0.00059327	0.90165	0.00045286	502.25883622948754	36.691	0.18512	36.691	36.602	36.788	0					14	8	2	0	0	0	0.36892	1	13124	13124		44.377	16.495	1	50146			43519	6453	28890	29006	44069	44069					0.0010606131497752358
TPSQPLPTY	9	Unmodified	_TPSQPLPTY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2580871582031	2	502.258382	1002.50221	-0.51992	-0.00026113	0.23507	0.00011807	-0.28485	-0.00014307	502.2585882770163	36.838	0.4103	36.838	36.63	37.04	0					18	8	3	0	0	0	0.21263	1	14337	14337		60.118	3.3972	1	476840			43520	6453	28890	29006	44070	44070					0.0010606131497752358
TPSSGDENEI	10	Unmodified	_TPSSGDENEI_					0	0	0			REV__ENSG00000235568|ENST00000329021|NFAM1	REV__ENSG00000235568|ENST00000329021|NFAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.723876953125	2	524.725101	1047.43565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.533	1	32.533	32.033	33.033	0								0	0	0	0.38475	1	11952	11952		35.152	4.6484	1		+		43521	17659	28891	29007	44071	44071					-0.08617219037569157
TPSSVIYHL	9	Unmodified	_TPSSVIYHL_					0	0	0		nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2;TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant;TRPM2|p.A785Rfs*17|1|0.49|ENSG00000142185|chr21:44401707-44401707|C/-|frameshift_variant;nc|ENSG00000142185|O94759-3|TRPM2;TRPM2|p.A177Pfs*6|1|0.43|ENSG00000142185|chr21:44366853-44366853|G/-|frameshift_variant;TRPM2|p.A177Gfs*92|1|0.52|ENSG00000142185|chr21:44366852-44366853|-/G|frameshift_variant	nc|ENSG00000142185|O94759-2|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.77484130859375	2	508.7742	1015.53385	0.91116	0.00046358	-0.61635	-0.00031359	0.29481	0.00014999	508.77378856932796	38.331	0.2031	38.331	38.236	38.439	0					11	7	2	0	0	0	0.32741	1	14549	14549		47.916	3.5384	1	85848			43522	4486	28892	29008	44072	44072					0.02670054068948957
TPSSVIYHL	9	Unmodified	_TPSSVIYHL_					0	0	0		nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2;TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant;TRPM2|p.A785Rfs*17|1|0.49|ENSG00000142185|chr21:44401707-44401707|C/-|frameshift_variant;nc|ENSG00000142185|O94759-3|TRPM2;TRPM2|p.A177Pfs*6|1|0.43|ENSG00000142185|chr21:44366853-44366853|G/-|frameshift_variant;TRPM2|p.A177Gfs*92|1|0.52|ENSG00000142185|chr21:44366852-44366853|-/G|frameshift_variant	nc|ENSG00000142185|O94759-2|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7741394042969	2	508.7742	1015.53385	-0.077905	-3.9636E-05	0.35461	0.00018042	0.27671	0.00014078	508.7744273582975	38.226	0.15674	38.226	38.127	38.283	0					6	3	2	0	0	0	0.087582	1	15001	15001		82.305	30.97	1	68916			43523	4486	28892	29008	44073	44073					0.02670054068948957
TPSSYPYGAL	10	Unmodified	_TPSSYPYGAL_					0	0	0		PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;PER1|p.P929Q|1|0.23|ENSG00000179094|chr17:8143552-8143552|G/T|missense_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2571411132812	2	528.25584	1054.49713	1.2549	0.0006629	-0.38753	-0.00020472	0.86736	0.00045819	528.255722125937	31.083	0.24202	31.083	30.903	31.145	0					10	6	2	0	0	0	0.63073	1	10667	10667		30.504	4.9296	1	52478			43524	6755	28893	29009	44074	44074					-0.02794242547633985
TPSVPILRSC	10	Unmodified	_TPSVPILRSC_					0	0	0			REV__nc|ENSG00000101019|Q9NVA1-5|UQCC1	REV__nc|ENSG00000101019|Q9NVA1-5|UQCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.79248046875	2	536.794609	1071.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.709	1	18.709	18.209	19.209	0								0	0	0	0.4201	1	4937	4937		20.947	1.8434	1		+		43525	13583	28894	29010	44075	44075					0.0417407211691625
TPSVRPLK	8	Unmodified	_TPSVRPLK_					0	0	0			REV__ENST00000372114.3_2_20:45315726-45315759:-|nuORF	REV__ENST00000372114.3_2_20:45315726-45315759:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.279296875	2	449.279452	896.544351	-0.30338	-0.0001363	0.024412	1.0968E-05	-0.27897	-0.00012534	449.2794401726468	22.848	0.26113	22.848	22.684	22.945	0					15	8	2	0	0	0	0.44433	1	6513	6513		65.803	5.5092	1	141040	+		43526	18663	28895	29011	44076	44076					0.09194081514033314
TPSVSMSQL	9	Unmodified	_TPSVSMSQL_					0	0	0		ENST00000567704.5_1_15:78190746-78191211:+|nuORF	ENST00000567704.5_1_15:78190746-78191211:+|nuORF	ENST00000567704.5_1_15:78190746-78191211:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.236083984375	2	475.236593	948.458632	0.73976	0.00035156	-1.7313	-0.00082277	-0.99151	-0.0004712	475.2360836234208	39.8	0.19662	39.8	39.686	39.883	0					10	4	3	0	0	0	0.19605	1	15783	15783		62.107	10.772	1	129570			43527	10771	28896	29012	44077	44077					-0.017658714537901687
TPTFVPYL	8	Unmodified	_TPTFVPYL_					0	0	0		NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant;nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2558288574219	2	469.255111	936.49567	-0.63014	-0.0002957	2.2638	0.0010623	1.6336	0.00076659	469.25627999534936	14.259	0.20658	14.259	14.093	14.3	0					11	5	3	0	0	0	0.7914	1	3426	3426		14.664	4.4793	1	510620			43528	1852	28897	29013	44078	44078					0.02488168154275172
TPTGIKVVM	9	Unmodified	_TPTGIKVVM_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.2756652832031	2	473.275521	944.536489	0.92817	0.00043928	-1.0147	-0.00048021	-0.086488	-4.0933E-05	473.2751064137337	34.504	0.21662	34.504	34.408	34.625	0					22	9	3	0	0	0	0.034359	1	11268	11268		104.75	43.775	1	403350			43529	6206	28898	29014	44079	44079					0.06200186202261193
TPTGIKVVM	9	Unmodified	_TPTGIKVVM_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2752380371094	2	473.275521	944.536489	-0.12198	-5.773E-05	-0.95774	-0.00045327	-1.0797	-0.000511	473.27515348315853	34.77	0.39489	34.77	34.657	35.052	0					26	11	4	0	0	0	0.047412	1	13407	13407		96.19	27.404	1	822810			43530	6206	28898	29014	44080	44080					0.06200186202261193
TPTGIKVVM	9	Oxidation (M)	_TPTGIKVVM(Oxidation (M))_		TPTGIKVVM(1)		TPTGIKVVM(74)	0	0	1		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.7744445800781	2	481.272978	960.531403	0.40643	0.0001956	-0.80525	-0.00038754	-0.39882	-0.00019194	481.27241786388345	27.426	0.26412	27.426	27.265	27.529	0					9	6	2	0	0	0	0.12239	1	9557	9557		74.255	33.682	1	77902			43531	6206	28898	29015	44081	44081		256			0.049558823396409935
TPTGKADQ	8	Unmodified	_TPTGKADQ_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.20587158203125	2	409.20615	816.397747	-0.51581	-0.00021107	-0.79916	-0.00032702	-1.315	-0.00053809	409.2061563234616	37.47	0.35856	37.47	37.268	37.627	0					9	7	2	0	0	0	0.75323	1	14692	14692		26.693	5.746	1	47226	+		43532	14944	28899	29016	44082	44082					-0.017796404417254053
TPTKPSKS	8	Unmodified	_TPTKPSKS_					0	0	0			REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant	REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.23980712890625	2	423.239993	844.465432	0.36146	0.00015298	-0.066264	-2.8045E-05	0.29519	0.00012494	423.240034461015	16.31	0.2288	16.31	16.163	16.392	0					8	5	2	0	0	0	0.71588	1	4399	4399		31.53	4.8369	1	49554	+		43533	17376	28900	29017	44083	44083					0.03697809489096926
TPTKSFAVY	9	Unmodified	_TPTKSFAVY_					0	0	0		ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.26947021484375	2	507.26875	1012.52295	1.2839	0.00065127	-0.08335	-4.2281E-05	1.2005	0.00060898	507.2688996314089	32.363	0.26991	32.363	32.253	32.523	0					8	5	2	0	0	0	0.30841	1	12208	12208		49.536	1.6204	1	379610			43534	6583	28901	29018	44084	44084					0.017186516946594566
TPTKTYGM	8	Unmodified	_TPTKTYGM_					0	0	0		UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant;UGDH|p.M432Nfs*20|1|0.29|ENSG00000109814|chr4:39503954-39503955|-/T|frameshift_variant;ENSG00000109814|ENST00000316423|UGDH	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.7207946777344	2	449.720578	897.426604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.78	1	22.78	22.28	23.28	0								0	0	0	1.7419	1	6494	6494		44.117	6.9577	1				43535	2593	28902	29019	44085	44085					-0.026212391369199395
TPTKTYGM	8	Unmodified	_TPTKTYGM_					0	0	0		UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant;UGDH|p.M432Nfs*20|1|0.29|ENSG00000109814|chr4:39503954-39503955|-/T|frameshift_variant;ENSG00000109814|ENST00000316423|UGDH	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.7208557128906	2	449.720578	897.426604	0.15529	6.9839E-05	-0.33407	-0.00015024	-0.17878	-8.04E-05	449.7205752710618	23.04	0.22057	23.04	22.941	23.161	0					13	5	3	0	0	0	0.27635	1	7556	7556		90.37	34.866	1	307640			43536	2593	28902	29019	44086	44086					-0.026212391369199395
TPTKTYGM	8	Unmodified	_TPTKTYGM_					0	0	0		UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant;UGDH|p.M432Nfs*20|1|0.29|ENSG00000109814|chr4:39503954-39503955|-/T|frameshift_variant;ENSG00000109814|ENST00000316423|UGDH	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.7198791503906	2	449.720578	897.426604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.791	1	22.791	22.291	23.291	0								0	0	0	1.7419	1	6760	6760		47.916	5.4411	1				43537	2593	28902	29019	44087	44087					-0.026212391369199395
TPTKTYGM	8	Unmodified	_TPTKTYGM_					0	0	0		UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant;UGDH|p.M432Nfs*20|1|0.29|ENSG00000109814|chr4:39503954-39503955|-/T|frameshift_variant;ENSG00000109814|ENST00000316423|UGDH	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.7204895019531	2	449.720578	897.426604	-0.097294	-4.3755E-05	-0.5488	-0.00024681	-0.6461	-0.00029056	449.72047299100575	22.955	0.26714	22.955	22.811	23.078	0					10	5	3	0	0	0	0.23635	1	7835	7835		118.74	52.94	1	399860			43538	2593	28902	29019	44088	44088					-0.026212391369199395
TPTPGHIM	8	Unmodified	_TPTPGHIM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;ENST00000468925.1_1_2:198272706-198273336:-|nuORF	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.2156677246094	2	427.215463	852.416374	0.87094	0.00037208	-1.6292	-0.000696	-0.75821	-0.00032392	427.2149423652577	27.831	0.31262	27.831	27.665	27.977	0					17	7	3	0	0	0	0.29779	1	9766	9766		83.287	14.802	1	208220			43539	2916	28903	29020	44089	44089					-0.01573802071504815
TPTPGHIM	8	Unmodified	_TPTPGHIM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;ENST00000468925.1_1_2:198272706-198273336:-|nuORF	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.2151184082031	2	427.215463	852.416374	-0.40546	-0.00017322	-0.61243	-0.00026164	-1.0179	-0.00043486	427.2152988181643	27.772	0.26724	27.772	27.611	27.878	0					11	5	3	0	0	0	0.49887	1	9991	9991		60.294	25.093	1	190960			43540	2916	28903	29020	44090	44090					-0.01573802071504815
TPTPGTGLNI	10	Unmodified	_TPTPGTGLNI_					0	0	0			REV__MMP2|p.D452N|1|0.2|ENSG00000087245|chr16:55493175-55493175|G/A|missense_variant	REV__MMP2|p.D452N|1|0.2|ENSG00000087245|chr16:55493175-55493175|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.1798400878906	3	324.178313	969.513111	0.55852	0.00018106	1.9398	0.00062886	2.4984	0.00080992	324.1797057800796	17.317	0.95862	17.317	16.98	17.939	0					51	19	4	0	0	0	0.70877	1	5049	5049		20.03	0	1	242250	+		43541	20887	28904	29021	44091	44091					0.027134636892810704
TPTPHPPRYQ	10	Unmodified	_TPTPHPPRYQ_					0	0	0			REV__ENST00000475688.1_1_3:50379695-50380193:-|nuORF	REV__ENST00000475688.1_1_3:50379695-50380193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.8074340820312	2	597.306729	1192.59891	0.48657	0.00029063	-1.2953	-0.00077371	-0.80877	-0.00048308	597.3060846484824	34.834	0.48059	34.834	34.645	35.126	0					26	16	2	0	0	0	0.65213	1	12327	12327		27.882	4.3595	1	89591	+		43542	19529	28905	29022	44092	44092					0.01031048594791173
TPTPRETST	9	Unmodified	_TPTPRETST_					0	0	0		MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.24822998046875	2	495.248546	988.482539	-0.76	-0.00037639	-2.0728	-0.0010266	-2.8328	-0.001403	495.24716674731883	40.517	0.27755	40.517	40.433	40.711	0					21	11	3	0	0	0	0.47473	1	15961	15961		27.882	17.017	1	281450			43543	6840	28906	29023	44093	44093					-0.012163146957732351
TPTPSASGATY	11	Unmodified	_TPTPSASGATY_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7481689453125	2	526.748379	1051.4822	1.3137	0.00069199	-0.58333	-0.00030727	0.73038	0.00038473	526.7482849047493	20.076	0.17467	20.076	19.97	20.145	0					8	5	2	0	0	0	0.37008	1	5322	5322		54.776	1.6874	1	47359	+		43544	14995	28907	29024	44094	44094					-0.0414773441559646
TPTRASPQL	9	Unmodified	_TPTRASPQL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7687072753906	2	485.769448	969.524344	0.83743	0.0004068	-2.0043	-0.00097362	-1.1669	-0.00056682	485.76870017100657	23.327	0.56177	23.327	22.922	23.484	0					21	11	3	0	0	0	0.085655	1	7881	7881		82.75	0.50997	1	1349000			43545	5547	28908	29025	44095	44095					0.03836285783427229
TPTVIAVHY	9	Unmodified	_TPTVIAVHY_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;CON__Q2UVX4	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.777099609375	2	500.776742	999.538931	0.018141	9.0844E-06	-0.24022	-0.0001203	-0.22208	-0.00011121	500.7767747194763	36.182	0.11077	36.182	36.12	36.23	0					5	3	2	0	0	0	0.077948	1	14081	14081		85.359	44.787	1	38299			43546	3430	28909	29026	44096	44096					0.03914357931557788
TPTVIAVHY	9	Unmodified	_TPTVIAVHY_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;CON__Q2UVX4	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.77618408203125	2	500.776742	999.538931	-0.63605	-0.00031852	0.36842	0.0001845	-0.26763	-0.00013402	500.77681445094845	36.1	0.16988	36.1	36.03	36.2	0					5	3	2	0	0	0	0.13483	1	14029	14029		71.378	21.353	1	79556			43547	3430	28909	29026	44097	44097					0.03914357931557788
TPVFGKGVAY	10	Unmodified	_TPVFGKGVAY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7858276367188	2	519.784567	1037.55458	1.118	0.0005811	1.3708	0.00071252	2.4888	0.0012936	519.7854475714345	35.965	0.20987	35.965	35.858	36.068	0					11	6	2	0	0	0	0.23114	1	13972	13972		54.722	40.058	1	63255			43548	925	28910	29027	44098	44098					0.03730644448637577
TPVFGKGVAY	10	Unmodified	_TPVFGKGVAY_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7847900390625	2	519.784567	1037.55458	0.31123	0.00016177	1.1671	0.00060666	1.4784	0.00076843	519.784904149129	35.935	0.36148	35.935	35.737	36.098	0					12	7	2	0	0	0	0.1998	1	13886	13886		58.23	0	1	159290			43549	925	28910	29027	44099	44099					0.03730644448637577
TPVFMGAEK	9	Unmodified	_TPVFMGAEK_					0	0	0			REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2512512207031	2	490.249503	978.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.723	1	13.723	13.223	14.223	0								0	0	0	0.3428	1	2799	2799		26.693	1.2427	1		+		43550	13628	28911	29028	44100	44100					-0.0056497721150208235
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7712097167969	2	461.77146	921.528367	0.10627	4.9073E-05	-0.78648	-0.00036317	-0.68021	-0.0003141	461.77103421717817	33.725	0.21186	33.725	33.658	33.87	0					20	8	3	0	0	0	0.20551	1	10984	10984		60.972	15.02	1	176450			43551	4101	28912	29029	44101	44101					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7708740234375	2	461.77146	921.528367	-0.82455	-0.00038075	-0.021432	-9.8968E-06	-0.84598	-0.00039065	461.7714247716736	33.82	0.28785	33.82	33.721	34.009	0					18	11	2	0	0	0	0.12239	1	11354	11354		74.255	28.303	1	256650			43552	4101	28912	29029	44102	44102					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7711181640625	2	461.77146	921.528367	-0.14843	-6.854E-05	-0.51073	-0.00023584	-0.65915	-0.00030438	461.77114880254766	34.02	0.24103	34.02	33.92	34.161	0					10	5	3	0	0	0	0.023074	1	13085	13085		116.9	37.453	1	442020			43553	4101	28912	29029	44103	44103					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.77142333984375	2	461.77146	921.528367	0.72207	0.00033343	-2.1748	-0.0010043	-1.4528	-0.00067084	461.77078302957375	34.019	0.43837	34.019	33.906	34.345	0					21	10	3	0	0	0	0.034359	1	13056	13056		104.75	51.395	1	1236700			43554	4101	28912	29029	44104	44104					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.7711181640625	2	461.77146	921.528367	-0.12667	-5.8492E-05	0.20818	9.6129E-05	0.081507	3.7638E-05	461.7714658822665	33.78	0.22912	33.78	33.689	33.918	0					10	6	2	0	0	0	0.12239	1	11888	11888		74.255	37.096	1	98753			43555	4101	28912	29029	44105	44105					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.7712097167969	2	461.77146	921.528367	-0.19728	-9.1098E-05	-0.32038	-0.00014794	-0.51766	-0.00023904	461.77133756032595	33.797	0.31938	33.797	33.679	33.999	0					13	9	2	0	0	0	0.011031	1	11900	11900		138.83	67.53	1	300300			43556	4101	28912	29029	44106	44106					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.2922668457031	2	461.77146	921.528367	-2.4834	-0.0011468	0.59218	0.00027345	-1.8912	-0.0008733	461.7717007743114	33.8	0.28563	33.8	33.702	33.988	0					14	8	3	0	0	0	0.17854	1	11880	11880		64.207	20.09	1	138450			43557	4101	28912	29029	44107	44107					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.7714538574219	2	461.77146	921.528367	-0.46467	-0.00021457	0.026939	1.244E-05	-0.43773	-0.00020213	461.77148803110924	33.965	0.25902	33.965	33.859	34.118	0					14	5	3	0	0	0	0.0073253	1	12976	12976		148.04	71.269	1	1226500			43558	4101	28912	29029	44108	44108					0.0644637527714167
TPVGLIVSH	9	Unmodified	_TPVGLIVSH_					0	0	0		ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENSG00000136718|ENST00000259239|IMP4	ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.7712707519531	2	461.77146	921.528367	0.81585	0.00037674	-0.97689	-0.0004511	-0.16103	-7.4361E-05	461.7708834983946	33.992	0.3543	33.992	33.842	34.196	0					18	7	3	0	0	0	0.0073253	1	12970	12970		148.04	73.788	1	1342200			43559	4101	28912	29029	44109	44109					0.0644637527714167
TPVKDLVKY	9	Unmodified	_TPVKDLVKY_					0	0	0		MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1;MIS18BP1|p.N380Ifs*3|5|0.35|ENSG00000129534|chr14:45242038-45242038|T/-|frameshift_variant;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1;MIS18BP1|p.M66*|1|0.35|ENSG00000129534|chr14:45247091-45247091|T/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8137817382812	2	531.813325	1061.6121	0.1227	6.5254E-05	0.53343	0.00028368	0.65613	0.00034894	531.8135993303317	29.77	0.33729	29.77	29.557	29.895	0					23	8	4	0	0	0	0.34452	1	10675	10675		46.457	9.2977	1	284390			43560	3602	28913	29030	44110	44110					0.08375486654176711
TPVKDLVKY	9	Unmodified	_TPVKDLVKY_					0	0	0		MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1;MIS18BP1|p.N380Ifs*3|5|0.35|ENSG00000129534|chr14:45242038-45242038|T/-|frameshift_variant;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1;MIS18BP1|p.M66*|1|0.35|ENSG00000129534|chr14:45247091-45247091|T/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.8138427734375	2	531.813325	1061.6121	0.28828	0.00015331	0.059738	3.1769E-05	0.34801	0.00018508	531.8134945871016	29.775	0.26935	29.775	29.582	29.851	0					11	5	3	0	0	0	0.24334	1	11056	11056		56.434	14.038	1	171250			43561	3602	28913	29030	44111	44111					0.08375486654176711
TPWVGDLTV	9	Unmodified	_TPWVGDLTV_					0	0	0			REV__nc|ENSG00000110713|P52948-4|NUP98	REV__nc|ENSG00000110713|P52948-4|NUP98	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2618408203125	2	494.260925	986.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.673	1	23.673	23.173	24.173	0								0	0	0	0.29774	1	7144	7144		35.618	5.1146	1		+		43562	13943	28914	29031	44112	44112					0.013503651776204606
TPYEGQRSY	9	Unmodified	_TPYEGQRSY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.755126953125	2	550.753995	1099.49344	1.5302	0.00084275	0.037607	2.0712E-05	1.5678	0.00086346	550.7539227581505	22.66	0.10864	22.66	22.594	22.703	0					5	3	2	0	0	0	0.38666	1	6453	6453		42.864	5.7052	1	93483			43563	950	28915	29032	44113	44113					-0.05232912321457661
TPYEGQRSY	9	Unmodified	_TPYEGQRSY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7542724609375	2	550.753995	1099.49344	1.8314	0.0010086	-1.0945	-0.00060279	0.7369	0.00040585	550.7533557934594	22.975	0.25768	22.975	22.887	23.145	0					14	6	3	0	0	0	0.011389	1	7551	7551		138.06	79.28	1	743750			43564	950	28915	29032	44114	44114					-0.05232912321457661
TPYEGQRSY	9	Unmodified	_TPYEGQRSY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.7546997070312	2	550.753995	1099.49344	0.30805	0.00016966	0.55011	0.00030297	0.85816	0.00047263	550.7544217187216	22.696	0.22368	22.696	22.63	22.854	0					12	8	2	0	0	0	0.070005	1	6725	6725		88.177	52.976	1	177760			43565	950	28915	29032	44115	44115					-0.05232912321457661
TPYEGQRSY	9	Unmodified	_TPYEGQRSY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.754150390625	2	550.753995	1099.49344	1.1522	0.00063459	-0.37862	-0.00020853	0.77361	0.00042607	550.753624481925	22.786	0.1437	22.786	22.694	22.838	0					5	3	2	0	0	0	0.085655	1	6858	6858		82.75	21.779	1	121690			43566	950	28915	29032	44116	44116					-0.05232912321457661
TPYEGQRSY	9	Unmodified	_TPYEGQRSY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7544555664062	2	550.753995	1099.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.906	1	22.906	22.406	23.406	0								0	0	0	0.0011674	1	7688	7688		126.24	62.035	1				43567	950	28915	29032	44117	44117					-0.05232912321457661
TPYIVWLGSE	10	Unmodified	_TPYIVWLGSE_					0	0	0			REV__OLFML2A|p.A536T|1|0.2|ENSG00000185585|chr9:124810059-124810059|G/A|missense_variant	REV__OLFML2A|p.A536T|1|0.2|ENSG00000185585|chr9:124810059-124810059|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.7986450195312	2	582.800414	1163.58628	-1.7081	-0.00099546	-1.4419	-0.00084033	-3.15	-0.0018358	582.7995621113313	23.881	0.25593	23.881	23.738	23.994	0					13	6	3	0	0	0	0.50287	1	7349	7349		32.812	0	1	284340	+		43568	21316	28916	29033	44118	44118					0.011025924118939656
TPYKGGNLY	9	Unmodified	_TPYKGGNLY_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.7579650878906	2	506.758549	1011.50255	0.85527	0.00043341	-1.0983	-0.00055655	-0.24299	-0.00012314	506.7578184203894	28.213	0.53234	28.213	28.043	28.575	0					43	13	5	0	0	0	0.048471	1	9934	9934		95.815	3.6245	1	2831500			43569	4631	28917	29034	44119	44119					-0.002745189651477631
TPYKGGNLY	9	Unmodified	_TPYKGGNLY_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.75689697265625	2	506.758549	1011.50255	-0.67143	-0.00034025	-0.51523	-0.0002611	-1.1867	-0.00060135	506.7584514470074	27.99	0.22896	27.99	27.877	28.106	0					19	8	3	0	0	0	0.1115	1	8960	8960		76.774	15.802	1	337240			43570	4631	28917	29034	44120	44120					-0.002745189651477631
TPYKGGNLY	9	Unmodified	_TPYKGGNLY_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7574462890625	2	506.758549	1011.50255	0.096672	4.8989E-05	-0.87564	-0.00044374	-0.77897	-0.00039475	506.75805614774004	28.035	0.42982	28.035	27.907	28.337	0					21	10	3	0	0	0	0.0792	1	9242	9242		84.916	5.4645	1	351140			43571	4631	28917	29034	44121	44121					-0.002745189651477631
TPYKGGNLY	9	Unmodified	_TPYKGGNLY_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.75823974609375	2	506.758549	1011.50255	-0.20773	-0.00010527	0.22514	0.00011409	0.017416	8.8255E-06	506.75849821018045	28.169	0.51824	28.169	27.959	28.478	0					24	10	4	0	0	0	0.12239	1	10162	10162		74.255	0.28031	1	1582100			43572	4631	28917	29034	44122	44122					-0.002745189651477631
TPYRVTFE	8	Unmodified	_TPYRVTFE_					0	0	0		ENST00000371482.5_2_9:140343848-140347544:-|nuORF;nc|ENSG00000165802|Q6X4W1-4|NSMF;nc|ENSG00000165802|Q6X4W1-6|NSMF;nc|ENSG00000165802|Q6X4W1-3|NSMF;nc|ENSG00000165802|Q6X4W1-2|NSMF;ENSG00000165802|ENST00000371475|NSMF	ENST00000371482.5_2_9:140343848-140347544:-|nuORF	ENST00000371482.5_2_9:140343848-140347544:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7583312988281	2	506.758549	1011.50255	1.2743	0.00064575	-1.559	-0.00079005	-0.28475	-0.0001443	506.7574624912897	28.15	0.568	28.15	27.943	28.511	0					28	11	4	0	0	0	0.27512	1	10174	10174		90.777	0.40684	1	3803900			43573	5830	28918	29035	44123	44123					-0.002745189651363944
TQAFAQAIGAG	11	Unmodified	_TQAFAQAIGAG_					0	0	0			REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1	REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.768798828125	2	517.766906	1033.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.775	1	22.775	22.275	23.275	0								0	0	0	0.29423	1	6491	6491		52.937	4.9772	1		+		43574	22000	28919	29036	44124	44124					0.0038398192079966975
TQAFAQAIGAG	11	Unmodified	_TQAFAQAIGAG_					0	0	0			REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1	REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7686767578125	2	517.766906	1033.51926	3.334	0.0017262	-0.4799	-0.00024848	2.8541	0.0014778	517.7668182376245	23.014	0.46241	23.014	22.755	23.218	0					31	9	5	0	0	0	0.21174	1	7725	7725		72.879	1.0018	1	10848000	+		43575	22000	28919	29036	44125	44125					0.0038398192079966975
TQANCFTYRL	10	Unmodified	_TQANCFTYRL_					0	0	0		SIAH3|p.D197N|1|0.34|ENSG00000215475|chr13:45783604-45783604|C/T|missense_variant	SIAH3|p.D197N|1|0.34|ENSG00000215475|chr13:45783604-45783604|C/T|missense_variant	SIAH3|p.D197N|1|0.34|ENSG00000215475|chr13:45783604-45783604|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.197265625	3	406.197491	1215.57064	0.62111	0.00025229	-1.0168	-0.00041301	-0.39567	-0.00016072	406.1971689287456	24.028	0.27184	24.028	23.954	24.225	0					21	8	3	0	0	0	0.67098	1	7059	7059		18.531	1.8137	1	814190			43576	22395	28920	29037	44126	44126					-0.028520173767901724
TQAQSQKAK	9	Unmodified	_TQAQSQKAK_					0	0	0		RPL34|p.A109T|1|0.28|ENSG00000109475|chr4:108625183-108625183|G/A|missense_variant	RPL34|p.A109T|1|0.28|ENSG00000109475|chr4:108625183-108625183|G/A|missense_variant	RPL34|p.A109T|1|0.28|ENSG00000109475|chr4:108625183-108625183|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2750244140625	2	495.272355	988.530158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.864	1	32.864	32.364	33.364	0								0	0	0	0.12601	1	12527	12527		65.465	0	1				43577	22356	28921	29038	44127	44127					0.0354338429509653
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.2939453125	2	530.792924	1059.57129	0.40781	0.00021646	0.19818	0.00010519	0.60599	0.00032166	530.7931329495613	20.446	0.18706	20.446	20.371	20.558	0					13	6	3	0	0	0	0.16806	1	5462	5462		65.465	5.3471	1	211750			43578	1841	28922	29039	44128	44128					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7936401367188	2	530.792924	1059.57129	0.1177	6.2476E-05	0.64096	0.00034022	0.75867	0.00040269	530.7932897413417	20.739	0.24626	20.739	20.685	20.931	0					7	5	2	0	0	0	0.003936	1	6494	6494		163.15	39.071	1	1196000			43579	1841	28922	29039	44129	44129					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.794189453125	2	530.792924	1059.57129	-0.098626	-5.235E-05	2.2605	0.0011999	2.1619	0.0011475	530.7942918897728	20.472	0.36281	20.472	20.398	20.761	0					15	11	2	0	0	0	0.023928	1	5728	5728		115.49	19.304	1	312000			43580	1841	28922	29039	44130	44130					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	354.5321044921875	3	354.197708	1059.57129	-0.86288	-0.00030563	0.84116	0.00029794	-0.021712	-7.6903E-06	354.1980415104382	20.461	0.16414	20.461	20.398	20.563	0					10	5	3	0	0	0	0.1424	1	5729	5729		85.862	53.111	1	115640			43581	1841	28922	29039	44131	44131					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7931518554688	2	530.792924	1059.57129	1.726	0.00091617	-0.44247	-0.00023486	1.2836	0.00068131	530.7928752993761	20.67	0.41775	20.67	20.562	20.98	0					12	8	2	0	0	0	0.00026591	1	6744	6744		190.26	77.851	1	2238600			43582	1841	28922	29039	44132	44132					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	354.1976318359375	3	354.197708	1059.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.695	1	20.695	20.195	21.195	0								0	0	0	0.029874	1	6746	6746		123.21	71.041	1				43583	1841	28922	29039	44133	44133					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.1975402832031	3	354.197708	1059.57129	-0.082747	-2.9309E-05	-0.051439	-1.822E-05	-0.13419	-4.7528E-05	354.1976616033831	20.526	0.13525	20.526	20.434	20.569	0					5	3	2	0	0	0	0.4966	1	5798	5798		40.058	17.479	1	117690			43584	1841	28922	29039	44134	44134					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.1977233886719	3	354.197708	1059.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.661	1	20.661	20.161	21.161	0								0	0	0	0.088368	1	6599	6599		91.265	34.633	1				43585	1841	28922	29039	44135	44135					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7935180664062	2	530.792924	1059.57129	3.4305	0.0018209	-2.0732	-0.0011004	1.3573	0.00072046	530.7918664620122	20.667	0.51581	20.667	20.46	20.976	0					26	10	5	0	0	0	1.5172E-08	1	6611	6611		219.56	57.312	1	3233500			43586	1841	28922	29039	44136	44136					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.19769287109375	3	354.197708	1059.57129	3.0449	0.0010785	-2.6293	-0.0009313	0.41561	0.00014721	354.1969361312893	20.667	0.46461	20.667	20.511	20.976	0					18	9	3	0	0	0	0.16806	1	6614	6614		72.243	32.185	1	822850			43587	1841	28922	29039	44137	44137					0.04389145334562272
TQCGSLIGK	9	Carbamidomethyl (C)	_TQC(Carbamidomethyl (C))GSLIGK_	TQC(1)GSLIGK		TQC(140)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2496643066406	2	482.250034	962.485516	0.56298	0.0002715	-1.3991	-0.00067472	-0.83613	-0.00040322	482.24950367678167	22.809	0.37639	22.809	22.604	22.98	0					20	9	3	0	0	0	0.010427	1	7473	7473		140.11	12.651	1	1706100			43588	6170	28923	29040	44138	44138	261				0.002772371574110366
TQCGSLIGK	9	Carbamidomethyl (C)	_TQC(Carbamidomethyl (C))GSLIGK_	TQC(1)GSLIGK		TQC(44)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.24945068359375	2	482.250034	962.485516	-1.3153	-0.00063431	0.082558	3.9813E-05	-1.2328	-0.0005945	482.2502626362594	22.508	0.17954	22.508	22.393	22.572	0					11	5	3	0	0	0	0.37744	1	6643	6643		43.651	7.204	1	196000			43589	6170	28923	29040	44139	44139	261				0.002772371574110366
TQCGSLIGK	9	Carbamidomethyl (C)	_TQC(Carbamidomethyl (C))GSLIGK_	TQC(1)GSLIGK		TQC(76)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2497253417969	2	482.250034	962.485516	0.68946	0.00033249	-2.4693	-0.0011908	-1.7799	-0.00085834	482.24936007648233	22.714	0.41002	22.714	22.501	22.911	0					16	8	4	0	0	0	0.11411	1	7737	7737		76.17	16.051	1	1045900			43590	6170	28923	29040	44140	44140	261				0.002772371574110366
TQCGSLIGK	9	Carbamidomethyl (C)	_TQC(Carbamidomethyl (C))GSLIGK_	TQC(1)GSLIGK		TQC(74)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2497863769531	2	482.250034	962.485516	-0.28205	-0.00013602	-1.0652	-0.00051371	-1.3473	-0.00064973	482.24982076677935	22.568	0.19422	22.568	22.471	22.665	0					11	4	4	0	0	0	0.12278	1	6753	6753		74.165	6.6713	1	272850			43591	6170	28923	29040	44141	44141	261				0.002772371574110366
TQCGSLIGK	9	Carbamidomethyl (C)	_TQC(Carbamidomethyl (C))GSLIGK_	TQC(1)GSLIGK		TQC(110)GSLIGK		0	1	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2497863769531	2	482.250034	962.485516	0.89661	0.00043239	-1.866	-0.00089989	-0.96941	-0.0004675	482.2493074001304	22.73	0.51628	22.73	22.521	23.038	0					21	10	4	0	0	0	0.026848	1	7592	7592		112.11	16.292	1	1645000			43592	6170	28923	29040	44142	44142	261				0.002772371574110366
TQGCERERSSQ	11	Carbamidomethyl (C)	_TQGC(Carbamidomethyl (C))ERERSSQ_	TQGC(1)ERERSSQ		TQGC(55)ERERSSQ		0	1	0			REV__ENSG00000253958|ENST00000519106|CLDN23	REV__ENSG00000253958|ENST00000519106|CLDN23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	669.294921875	2	669.296764	1336.57898	-3.0918	-0.0020693	0.32811	0.00021961	-2.7637	-0.0018497	669.2970229275896	17.776	0.45939	17.776	17.666	18.125	0					19	9	4	0	0	0	0.37057	1	5200	5200		54.722	10.345	1	3386400	+		43593	17741	28924	29041	44143	44143	621				-0.07585115198139647
TQGQKSALQ	9	Unmodified	_TQGQKSALQ_					0	0	0		ENST00000304926.7_1_16:3440119-3447566:-|nuORF;ENSG00000140987|ENST00000396852|ZSCAN32	ENST00000304926.7_1_16:3440119-3447566:-|nuORF	ENST00000304926.7_1_16:3440119-3447566:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7602233886719	2	480.759081	959.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.471	1	41.471	40.971	41.971	0								0	0	0	0.25587	1	16304	16304		42.864	5.0528	1				43594	4417	28925	29042	44144	44144					0.022236954037680334
TQHLNAHLLA	10	Unmodified	_TQHLNAHLLA_					0	0	0		ENST00000510531.5_1_5:6644946-6645183:+|nuORF	ENST00000510531.5_1_5:6644946-6645183:+|nuORF	ENST00000510531.5_1_5:6644946-6645183:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2106628417969	3	373.208607	1116.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.059	1	49.059	48.559	49.559	0								0	0	0	0.4201	1	18489	18489		15.333	1.8252	1				43595	10231	28926	29043	44145	44145					0.050353524574120456
TQIEKAVL	8	Unmodified	_TQIEKAVL_					0	0	0			REV__nc|ENSG00000072042|Q8TC12-2|RDH11	REV__nc|ENSG00000072042|Q8TC12-2|RDH11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.77032470703125	2	451.271293	900.528032	-1.19	-0.00053701	0.17248	7.7834E-05	-1.0175	-0.00045917	451.2715529050656	32.466	0.40679	32.466	32.365	32.772	0					29	16	2	0	0	0	0.51384	1	10820	10820		58.782	3.2778	1	373530	+		43596	13189	28927	29044	44146	44146					0.07378955557271638
TQKAWKGKR	9	Unmodified	_TQKAWKGKR_					0	0	0			REV__ENST00000343882.10_1_6:108986065-109001113:+|nuORF	REV__ENST00000343882.10_1_6:108986065-109001113:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.20501708984375	3	368.220847	1101.64071	0.92812	0.00034175	-0.11205	-4.1258E-05	0.81607	0.00030049	368.2208645445967	17.421	0.65663	17.421	17.226	17.883	0					13	13	2	0	0	0	0.39215	1	4970	4970		41.427	3.9184	1	153260	+		43597	18470	28928	29045	44147	44147					0.09395649073962886
TQLCPYFSSFK	11	Carbamidomethyl (C)	_TQLC(Carbamidomethyl (C))PYFSSFK_	TQLC(1)PYFSSFK		TQLC(52)PYFSSFK		0	1	0		ENST00000509608.1_1_5:31464267-31468068:-|nuORF	ENST00000509608.1_1_5:31464267-31468068:-|nuORF	ENST00000509608.1_1_5:31464267-31468068:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	689.3284301757812	2	689.329013	1376.64347	-1.6612	-0.0011451	0.70326	0.00048478	-0.95792	-0.00066032	689.3294277467286	17.732	0.16798	17.732	17.608	17.776	0					10	4	3	0	0	0	0.40021	1	5062	5062		51.528	8.6635	1	509730			43598	10225	28929	29046	44148	44148	411				-0.02978308374053995
TQLESPSPKL	10	Unmodified	_TQLESPSPKL_					0	0	0			REV__ENST00000395738.2_1_22:50921135-50921831:+|nuORF	REV__ENST00000395738.2_1_22:50921135-50921831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.2082214355469	3	367.20464	1098.59209	3.1686	0.0011635	4.016	0.0014747	7.1846	0.0026382	367.20645810990067	22.524	0.66613	22.524	22.156	22.822	0					27	13	3	0	0	0	0.46128	1	7463	7463		45.908	5.13	1	1131400	+		43599	18882	28930	29047	44149	44149					0.04673690923573304
TQLGEINKIT	10	Unmodified	_TQLGEINKIT_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.8167724609375	2	558.816596	1115.61864	-0.12788	-7.146E-05	1.1097	0.00062011	0.9818	0.00054865	558.8172068894501	21.151	0.16302	21.151	21.045	21.208	0					8	3	3	0	0	0	0.27065	1	6957	6957		70.816	1.1886	1	624830	+		43600	14640	28931	29048	44150	44150					0.06545379814906482
TQLLCEAPNL	10	Unmodified	_TQLLCEAPNL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.8570861816406	3	367.858475	1100.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.268	1	31.268	30.768	31.768	0								0	0	0	0.34721	1	11365	11365		43.419	1.0805	1				43601	2857	28932	29049	44151	44151					0.007340620173863499
TQLLIINKT	9	Unmodified	_TQLLIINKT_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000590359.1_1_17:66890978-66899548:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.55340576171875	3	348.553492	1042.63865	0.49915	0.00017398	-0.71657	-0.00024976	-0.21742	-7.5782E-05	348.55324196628067	27.745	0.31394	27.745	27.61	27.924	0					19	7	4	0	0	0	0.12278	1	9714	9714		74.165	0	1	1828900			43602	10	28933	29050	44152	44152					0.11903175545512568
TQMKSTFEK	9	Unmodified	_TQMKSTFEK_					0	0	0		ENSG00000155975|ENST00000324849|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A	ENSG00000155975|ENST00000324849|VPS37A	ENSG00000155975|ENST00000324849|VPS37A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.2762451171875	2	550.276249	1098.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.02	1	19.02	18.52	19.52	0								0	0	0	0.38913	1	5940	5940		14.137	0	1				43603	5147	28934	29051	44153	44153					-0.007382244996506415
TQMSNVKN	8	Unmodified	_TQMSNVKN_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2261962890625	2	461.226559	920.438566	-0.15049	-6.941E-05	-0.080031	-3.6913E-05	-0.23052	-0.00010632	461.2264057385036	19.029	0.21557	19.029	18.883	19.099	0					6	4	2	0	0	0	0.64144	1	5942	5942		42.396	8.2236	1	101580	+		43604	14896	28935	29052	44154	44154					-0.02483622393742735
TQNGGREKME	10	Unmodified	_TQNGGREKME_					0	0	0			REV__ENST00000595700.5_1_19:44242246-44254893:-|nuORF	REV__ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.2703247070312	2	575.269487	1148.52442	1.6843	0.00096895	-0.47773	-0.00027482	1.2066	0.00069413	575.2691945728658	38.585	0.59755	38.585	38.435	39.032	0					35	12	4	0	0	0	0.43008	1	15171	15171		52.937	0	1	3782400	+		43605	13798	28936	29053	44155	44155					-0.04390082278882801
TQNKPKSE	8	Unmodified	_TQNKPKSE_					0	0	0		tr|U7SVT4|U7SVT4_FUSNUMolybdatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01334PE=4SV=1	tr|U7SVT4|U7SVT4_FUSNUMolybdatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01334PE=4SV=1	tr|U7SVT4|U7SVT4_FUSNUMolybdatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01334PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2455139160156	2	466.245806	930.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.409	1	14.409	13.909	14.909	0								0	0	0	1.7419	1	3503	3503		20.947	0	1				43606	22847	28937	29054	44156	44156					0.009040065124281682
TQNLAQKK	8	Unmodified	_TQNLAQKK_					0	0	0		ENSG00000168899|ENST00000306384|VAMP5	ENSG00000168899|ENST00000306384|VAMP5	ENSG00000168899|ENST00000306384|VAMP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.771728515625	2	465.771991	929.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.886	1	13.886	13.386	14.386	0								0	0	0	1.7419	1	3482	3482		38.806	8.3025	1				43607	6134	28938	29055	44157	44157					0.061845896460340555
TQNPNYYNL	9	Unmodified	_TQNPNYYNL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.760986328125	2	563.76182	1125.50909	0.40719	0.00022956	0.68829	0.00038803	1.0955	0.00061759	563.7614013689068	39.793	0.26135	39.793	39.658	39.919	0					14	10	2	0	0	0	0.30841	1	15142	15142		49.536	12.508	1	86477			43608	4594	28939	29056	44158	44158					-0.04864625804430034
TQNPNYYNL	9	Unmodified	_TQNPNYYNL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7620849609375	2	563.76182	1125.50909	1.8808	0.0010603	-0.96736	-0.00054536	0.91344	0.00051496	563.7608454067972	39.774	0.33553	39.774	39.6	39.936	0					26	12	3	0	0	0	0.44949	1	15658	15658		37.508	8.3586	1	135260			43609	4594	28939	29056	44159	44159					-0.04864625804430034
TQNYPPAIK	9	Unmodified	_TQNYPPAIK_					0	0	0		ENSG00000105605|ENST00000391767|CACNG7	ENSG00000105605|ENST00000391767|CACNG7	ENSG00000105605|ENST00000391767|CACNG7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.27783203125	2	516.279649	1030.54475	-1.5106	-0.0007799	-2.9165	-0.0015057	-4.4271	-0.0022856	516.2784237618781	18.641	0.27674	18.641	18.607	18.884	0					15	7	3	0	0	0	0.1424	1	4910	4910		69.628	6.0938	1	1504500			43610	2372	28940	29057	44160	44160					0.03069456443222407
TQPDVTGL	8	Unmodified	_TQPDVTGL_					0	0	0			REV__nc|ENSG00000112511|O43189-2|PHF1	REV__nc|ENSG00000112511|O43189-2|PHF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.7166442871094	2	415.71635	829.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.019	1	32.019	31.519	32.519	0								0	0	0	1.7419	1	11714	11714		13.775	0	1		+		43611	20977	28941	29058	44161	44161					-0.0033846978188876164
TQPIHTTVKPS	11	Unmodified	_TQPIHTTVKPS_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.5594482421875	3	403.559305	1207.65609	0.5787	0.00023354	-0.70806	-0.00028575	-0.12936	-5.2204E-05	403.55902441274384	20.883	0.41834	20.883	20.675	21.093	0					19	8	3	0	0	0	0.62108	1	6698	6698		37.6	0	1	5895800	+		43612	16055	28942	29059	44162	44162					0.060564710805238064
TQPPCHLD	8	Unmodified	_TQPPCHLD_					0	0	0			REV__ENST00000535984.1_1_11:113285130-113295217:-|nuORF	REV__ENST00000535984.1_1_11:113285130-113295217:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.70672607421875	2	455.708002	909.401452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.419	1	11.419	10.919	11.919	0								0	0	0	1.7419	1	2331	2331		11.511	2.6887	1		+		43613	20102	28943	29060	44163	44163					-0.05687293939513438
TQPSGGAVL	9	Unmodified	_TQPSGGAVL_					0	0	0			REV__ENSG00000198894|ENST00000361786|CIPC	REV__ENSG00000198894|ENST00000361786|CIPC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.2242431640625	2	415.224342	828.434132	0.39149	0.00016256	-0.43669	-0.00018132	-0.045199	-1.8768E-05	415.22411736358146	21.899	0.16275	21.899	21.793	21.955	0					5	3	2	0	0	0	0.16002	1	7346	7346		66.429	6.1353	1	296380	+		43614	17448	28944	29061	44164	44164					0.013052364549935191
TQPSPELRCT	10	Unmodified	_TQPSPELRCT_					0	0	0		ENST00000585075.1_1_17:73267468-73267714:+|nuORF	ENST00000585075.1_1_17:73267468-73267714:+|nuORF	ENST00000585075.1_1_17:73267468-73267714:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.85260009765625	3	377.853612	1130.53901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.471	1	26.471	25.971	26.971	0								0	0	0	0.4146	1	8328	8328		26.063	3.0209	1				43615	10892	28945	29062	44165	44165					-0.02104010130756251
TQQHAPIET	9	Unmodified	_TQQHAPIET_					0	0	0			REV__ENST00000508377.5_1_5:34839347-34845796:+|nuORF	REV__ENST00000508377.5_1_5:34839347-34845796:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7571411132812	2	512.756538	1023.49852	-0.28821	-0.00014778	2.5002	0.001282	2.212	0.0011342	512.7581620690571	24.549	0.15662	24.549	24.468	24.624	0					7	5	2	0	0	0	0.51991	1	7530	7530		30.318	0.47618	1	76543	+		43616	17535	28946	29063	44166	44166					-0.012286084588595259
TQQSFIIPK	9	Unmodified	_TQQSFIIPK_					0	0	0			REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.3043212890625	2	531.303124	1060.5917	1.1801	0.000627	0.80759	0.00042907	1.9877	0.0010561	531.3037972815331	28.867	0.18564	28.867	28.75	28.936	0					7	4	2	0	0	0	0.1424	1	9660	9660		69.628	4.1622	1	99086	+		43617	12141	28947	29064	44167	44167					0.06382315994369492
TQRQPDFT	8	Unmodified	_TQRQPDFT_					0	0	0			REV__ENST00000531694.5_1_11:118924831-118926006:-|nuORF	REV__ENST00000531694.5_1_11:118924831-118926006:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7433776855469	2	496.743431	991.472308	-0.69237	-0.00034393	0.45982	0.00022841	-0.23255	-0.00011552	496.74371404477176	17.939	0.15938	17.939	17.834	17.994	0					5	3	2	0	0	0	0.54629	1	5282	5282		55.504	4.1688	1	634670	+		43618	15419	28948	29065	44168	44168					-0.023768776303313643
TQSEISTSLP	10	Unmodified	_TQSEISTSLP_					0	0	0		ENSG00000163935|ENST00000394752|SFMBT1;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	ENSG00000163935|ENST00000394752|SFMBT1	ENSG00000163935|ENST00000394752|SFMBT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.7722778320312	2	531.769311	1061.52407	2.4063	0.0012796	1.428	0.00075935	3.8342	0.0020389	531.7701245606958	40.555	0.34442	40.555	40.423	40.767	0					31	14	4	0	0	0	0.43008	1	15438	15438		52.937	8.8199	1	296850			43619	5629	28949	29066	44169	44169					-0.004231787270782661
TQSFKRKPG	9	Unmodified	_TQSFKRKPG_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.2016296386719	3	350.201452	1047.58253	0.51016	0.00017866	-0.33802	-0.00011838	0.17214	6.0284E-05	350.20136694612523	27.976	0.16465	27.976	27.831	27.996	0					6	3	2	0	0	0	0.56424	1	10191	10191		25.574	2.0514	1	244350			43620	2718	28950	29067	44170	44170					0.06063967428713113
TQSNRVLY	8	Unmodified	_TQSNRVLY_					0	0	0			REV__ENSG00000107338|ENST00000377707|SHB	REV__ENSG00000107338|ENST00000377707|SHB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.76123046875	2	490.761623	979.508694	2.6751	0.0013129	-3.5385	-0.0017365	-0.86333	-0.00042369	490.7598897885908	16.625	0.36127	16.625	16.466	16.828	0					13	7	3	0	0	0	0.3961	1	4629	4629		71.296	7.0884	1	988870	+		43621	13853	28951	29068	44171	44171					0.01811999266374187
TQTDVKLK	8	Unmodified	_TQTDVKLK_					0	0	0		ENST00000494958.1_1_2:62934317-63053404:+|nuORF;EHBP1|p.N344Ifs*2|1|0.38|ENSG00000115504|chr2:62864894-62864894|A/-|frameshift_variant;EHBP1|p.T756Qfs*17|1|0.44|ENSG00000115504|chr2:62949001-62949001|A/-|frameshift_variant;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENST00000494958.1_1_2:62934317-63053404:+|nuORF	ENST00000494958.1_1_2:62934317-63053404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.77398681640625	2	466.7742	931.533846	-0.1336	-6.236E-05	0.032921	1.5367E-05	-0.10068	-4.6993E-05	466.7741463639343	18.114	0.4221	18.114	17.853	18.275	0					14	8	2	0	0	0	0.24681	1	5489	5489		107.01	2.261	1	2126500			43622	892	28952	29069	44172	44172					0.06534054068958994
TQTESGPPI	9	Unmodified	_TQTESGPPI_					0	0	0			REV__ENSG00000124429|ENST00000262753|POF1B	REV__ENSG00000124429|ENST00000262753|POF1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.23284912109375	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.629	1	42.629	42.129	43.129	0								0	0	0	0.30504	1	16722	16722		34.173	4.331	1		+		43623	14397	28953	29070	44173	44173					-0.01691102098743613
TQTPKFQVL	9	Unmodified	_TQTPKFQVL_					0	0	0		nc|ENSG00000211721|A0A0K0K1A5|TRBV6-5;nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211721|A0A0K0K1A5|TRBV6-5	nc|ENSG00000211721|A0A0K0K1A5|TRBV6-5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.3032836914062	2	531.303124	1060.5917	0.11981	6.3654E-05	1.0431	0.00055419	1.1629	0.00061785	531.3030637648385	47.043	0.12046	47.043	46.988	47.108	0					14	7	2	0	0	0	0.33044	1	17304	17304		47.657	3.2801	1	75316			43624	11736	28954	29071	44174	44174					0.06382315994369492
TQTPRPLR	8	Unmodified	_TQTPRPLR_					0	0	0		ENST00000588952.5_1_19:10341886-10341940:-|nuORF	ENST00000588952.5_1_19:10341886-10341940:-|nuORF	ENST00000588952.5_1_19:10341886-10341940:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7851867675781	2	484.785433	967.556313	-0.093307	-4.5234E-05	-0.49247	-0.00023874	-0.58577	-0.00028397	484.78518793375406	19.783	0.42026	19.783	19.676	20.096	0					15	8	2	0	0	0	0.79983	1	6327	6327		19.997	0.6368	1	219660			43625	10931	28955	29072	44175	44175					0.07123698257225897
TQTPVQPVVL	10	Unmodified	_TQTPVQPVVL_					0	0	0			REV__ENST00000461035.5_1_1:45478567-45479041:+|nuORF	REV__ENST00000461035.5_1_1:45478567-45479041:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.81787109375	2	541.316232	1080.61791	1.0465	0.00056649	-1.0113	-0.00054741	0.03524	1.9076E-05	541.3155106707845	37.179	0.2833	37.179	37.063	37.346	0					24	15	2	0	0	0	0.6796	1	12198	12198		24.519	1.4767	1	96652	+		43626	19379	28956	29073	44176	44176					0.08082585165857381
TQTPVQPVVL	10	Unmodified	_TQTPVQPVVL_					0	0	0			REV__ENST00000461035.5_1_1:45478567-45479041:+|nuORF	REV__ENST00000461035.5_1_1:45478567-45479041:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.3165283203125	2	541.316232	1080.61791	0.31196	0.00016887	0.14439	7.8162E-05	0.45636	0.00024703	541.3162566354122	37.478	0.5244	37.478	37.251	37.776	0					43	16	3	0	0	0	0.54861	1	14600	14600		40.058	7.2458	1	520820	+		43627	19379	28956	29073	44177	44177					0.08082585165857381
TQTQFFHVK	9	Unmodified	_TQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.200927734375	3	379.201341	1134.58219	0.52095	0.00019754	-1.2206	-0.00046284	-0.69961	-0.00026529	379.2008453279513	28.101	0.17986	28.101	28.017	28.197	0					9	6	2	0	0	0	0.41958	1	8740	8740		40.058	4.9061	1	56562			43628	5578;5577	28957	29074	44178	44178					0.02028547708869155
TQTQFFHVK	9	Unmodified	_TQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.2012939453125	3	379.201341	1134.58219	0.81795	0.00031017	-1.1019	-0.00041784	-0.28393	-0.00010767	379.2009225350656	28.371	0.36362	28.371	28.291	28.655	0					20	9	4	0	0	0	0.48623	1	10030	10030		33.922	10.399	1	771550			43629	5578;5577	28957	29074	44179	44179					0.02028547708869155
TQTQFFHVK	9	Unmodified	_TQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	568.2984619140625	2	568.298373	1134.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.127	1	28.127	27.627	28.627	0								0	0	0	0.33329	1	9035	9035		35.152	8.1047	1				43630	5578;5577	28957	29074	44180	44180					0.02028547708869155
TQTQFFHVK	9	Unmodified	_TQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.298095703125	2	568.298373	1134.58219	0.2405	0.00013667	0.57195	0.00032504	0.81244	0.00046171	568.2983866616788	28.363	0.2574	28.363	28.258	28.515	0					10	5	3	0	0	0	0.12418	1	10391	10391		85.862	34.669	1	204540			43631	5578;5577	28957	29074	44181	44181					0.02028547708869155
TQTQFFHVK	9	Unmodified	_TQTQFFHVK_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.20123291015625	3	379.201341	1134.58219	-0.46419	-0.00017602	0.32197	0.00012209	-0.14222	-5.3929E-05	379.20141654001293	28.319	0.41309	28.319	28.211	28.624	0					16	8	3	0	0	0	0.10506	1	10258	10258		78.264	35.4	1	1097200			43632	5578;5577	28957	29074	44182	44182					0.02028547708869155
TQTQQHAI	8	Unmodified	_TQTQQHAI_					0	0	0			REV__ENST00000588129.6_2_19:52366325-52366472:-|nuORF	REV__ENST00000588129.6_2_19:52366325-52366472:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7377624511719	2	463.738148	925.461744	-1.1529	-0.00053464	0.39319	0.00018234	-0.7597	-0.0003523	463.73833608921774	25.935	0.25125	25.935	25.748	26	0					7	4	2	0	0	0	0.68754	1	8096	8096		35.201	0	1	131810	+		43633	20501	28958	29075	44183	44183					-0.003968602847749025
TQVALQTQ	8	Unmodified	_TQVALQTQ_					0	0	0			REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF	REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7427062988281	2	444.742899	887.471246	-0.37841	-0.00016829	-0.095925	-4.2662E-05	-0.47433	-0.00021095	444.7428349720699	16.234	0.18329	16.234	16.135	16.318	0					6	4	2	0	0	0	0.58597	1	4363	4363		51.335	0	1	268260	+		43634	12173	28959	29076	44184	44184					0.02300908000745494
TQWLICVL	8	Unmodified	_TQWLICVL_					0	0	0		ENST00000256458.4_1_3:10255026-10264411:+|nuORF;IRAK2|p.N268Mfs*102|1|0.23|ENSG00000134070|chr3:10216943-10216943|C/-|frameshift_variant	ENST00000256458.4_1_3:10255026-10264411:+|nuORF	ENST00000256458.4_1_3:10255026-10264411:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2713317871094	2	488.270238	974.525924	-0.077615	-3.7897E-05	2.2619	0.0011044	2.1843	0.0010665	488.27139923319726	32.607	0.17256	32.607	32.537	32.71	0					12	7	2	0	0	0	0.61938	1	10552	10552		45.952	2.3259	1	104320			43635	8264	28960	29077	44185	44185					0.03764203547814304
TQWLICVL	8	Unmodified	_TQWLICVL_					0	0	0		ENST00000256458.4_1_3:10255026-10264411:+|nuORF;IRAK2|p.N268Mfs*102|1|0.23|ENSG00000134070|chr3:10216943-10216943|C/-|frameshift_variant	ENST00000256458.4_1_3:10255026-10264411:+|nuORF	ENST00000256458.4_1_3:10255026-10264411:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2713928222656	2	488.270238	974.525924	0.75246	0.00036741	1.6881	0.00082423	2.4405	0.0011916	488.27081879519	32.907	0.24343	32.907	32.786	33.03	0					14	6	4	0	0	0	0.58597	1	12117	12117		51.335	0	1	619050			43636	8264	28960	29077	44186	44186					0.03764203547814304
TQYSSAML	8	Unmodified	_TQYSSAML_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000531486.1_1_17:45681241-45696545:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.7071228027344	2	450.710211	899.405868	-0.30775	-0.00013871	-2.8164	-0.0012694	-3.1241	-0.0014081	450.7072730973521	38.047	0.31155	38.047	37.924	38.236	0					27	18	2	0	0	0	0.74405	1	12406	12406		27.882	1.0861	1	137930			43637	4435	28961	29078	44187	44187					-0.04785829516595186
TRAPASAPV	9	Unmodified	_TRAPASAPV_					0	0	0			REV__ADAM23|p.N82Ifs*87|1|0.39|ENSG00000114948|chr2:206445331-206445331|A/-|frameshift_variant;REV__nc|ENSG00000114948|O75077-2|ADAM23	REV__nc|ENSG00000114948|O75077-2|ADAM23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.2451171875	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.589	1	33.589	33.089	34.089	0								0	0	0	0.27025	1	10939	10939		40.778	1.5253	1		+		43638	20983;12065	28962	29079	44188	44188					0.037166315832337204
TRAQEVLK	8	Unmodified	_TRAQEVLK_					0	0	0		tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.781494140625	2	472.779816	943.545079	2.4215	0.0011448	0.84949	0.00040162	3.271	0.0015465	472.7802581546381	40.917	0.41057	40.917	40.735	41.145	0					20	7	4	0	0	0	0.23635	1	16228	16228		118.74	6.3322	1	679800			43639	22659	28963	29080	44189	44189					0.07104876163100471
TRAQIPPTN	9	Unmodified	_TRAQIPPTN_					0	0	0		ENST00000542587.5_3_19:19738235-19738667:-|nuORF	ENST00000542587.5_3_19:19738235-19738667:-|nuORF	ENST00000542587.5_3_19:19738235-19738667:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2749328613281	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.459	1	44.459	43.959	44.959	0								0	0	0	0.3428	1	16663	16663		26.693	5.746	1				43640	10553	28964	29081	44190	44190					0.036836881577073655
TRARSLRFV	9	Unmodified	_TRARSLRFV_					0	0	0		ENST00000534448.5_1_11:47269480-47270343:-|nuORF;ENST00000529788.2_1_11:47269122-47270343:-|nuORF;nc|ENSG00000134575|P11117-2|ACP2;ENST00000444355.5_1_11:47267202-47270343:-|nuORF;ACP2|p.L293Rfs*89|1|0.29|ENSG00000134575|chr11:47243102-47243102|A/-|frameshift_variant;ENSG00000134575|ENST00000672073|ACP2	ENST00000534448.5_1_11:47269480-47270343:-|nuORF	ENST00000534448.5_1_11:47269480-47270343:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.3326416015625	2	553.333082	1104.65161	0.67737	0.00037481	-0.87791	-0.00048578	-0.20054	-0.00011096	553.3326806435629	54.327	0.19967	54.327	54.227	54.427	0					16	12	2	0	0	0	0.59802	1	18982	18982		21.96	0	1	57963			43641	38	28965	29082	44191	44191					0.10347051448275124
TRASAAIDSP	10	Unmodified	_TRASAAIDSP_					0	0	0			REV__LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant	REV__LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2456970214844	2	494.756538	987.498523	0.069593	3.4432E-05	0.64898	0.00032109	0.71857	0.00035552	494.75682256948414	29.653	0.19994	29.653	29.539	29.739	0					10	5	3	0	0	0	0.63224	1	9981	9981		30.318	0	1	127770	+		43642	16525	28966	29083	44192	44192					0.004273915411431517
TRDRDSGRLK	10	Unmodified	_TRDRDSGRLK_					0	0	0		nc|ENSG00000185379|O75771-3|RAD51D;nc|ENSG00000185379|O75771-4|RAD51D;nc|ENSG00000185379|O75771-5|RAD51D;ENSG00000185379|ENST00000345365|RAD51D;nc|ENSG00000185379|O75771-8|RAD51D	nc|ENSG00000185379|O75771-3|RAD51D	nc|ENSG00000185379|O75771-3|RAD51D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.3324584960938	2	602.331267	1202.64798	2.0512	0.0012355	0.045503	2.7408E-05	2.0967	0.0012629	602.3313366221719	31.563	0.36385	31.563	31.454	31.818	0					23	7	4	0	0	0	0.072943	1	11823	11823		101.6	101.6	1	4328100			43643	7077	28967	29084	44193	44193					0.05476336883748445
TRDRDSGRLK	10	Unmodified	_TRDRDSGRLK_					0	0	0		nc|ENSG00000185379|O75771-3|RAD51D;nc|ENSG00000185379|O75771-4|RAD51D;nc|ENSG00000185379|O75771-5|RAD51D;ENSG00000185379|ENST00000345365|RAD51D;nc|ENSG00000185379|O75771-8|RAD51D	nc|ENSG00000185379|O75771-3|RAD51D	nc|ENSG00000185379|O75771-3|RAD51D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.3331909179688	2	602.331267	1202.64798	3.0711	0.0018498	-0.55171	-0.00033231	2.5194	0.0015175	602.3309651522886	31.594	0.26339	31.594	31.488	31.751	0					21	5	5	0	0	0	0.072943	1	11816	11816		101.6	101.6	1	6953000			43644	7077	28967	29084	44194	44194					0.05476336883748445
TRDSWYIF	8	Unmodified	_TRDSWYIF_					0	0	0			REV__LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	REV__LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2645263671875	2	544.263999	1086.51345	0.32492	0.00017684	0.80148	0.00043622	1.1264	0.00061306	544.2643711840986	11.981	0.6561	11.981	11.813	12.469	0					38	17	3	0	0	0	0.75243	1	2553	2553		26.796	7.4361	1	1904100	+		43645	14360	28968	29085	44195	44195					-0.026351165908636176
TREIGAVL	8	Unmodified	_TREIGAVL_					0	0	0			REV__ENSG00000136114|ENST00000258613|THSD1	REV__ENSG00000136114|ENST00000258613|THSD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.75567626953125	2	429.75581	857.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.789	1	35.789	35.289	36.289	0								0	0	0	1.7419	1	13848	13848		40.573	1.3198	1		+		43646	14849	28969	29086	44196	44196					0.06261802243045622
TREQRQRR	8	Unmodified	_TREQRQRR_					0	0	0			REV__nc|ENSG00000259009|P0DV77|TPRX2	REV__nc|ENSG00000259009|P0DV77|TPRX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.320068359375	2	565.318494	1128.62244	3.47	0.0019616	-0.51713	-0.00029234	2.9529	0.0016693	565.3182234844182	13.889	0.40513	13.889	13.783	14.188	0					12	8	2	0	0	0	0.37378	1	3342	3342		73.975	2.0973	1	1297300	+		43647	16752	28970	29087	44197	44197					0.063269071519926
TREYKKGPN	9	Unmodified	_TREYKKGPN_					0	0	0			REV__tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	REV__tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7935791015625	2	546.793455	1091.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.882	1	19.882	19.382	20.382	0								0	0	0	0.22284	1	6359	6359		47.657	8.9037	1		+		43648	22156	28971	29088	44198	44198					0.030233597034794002
TRFSTSVRA	9	Unmodified	_TRFSTSVRA_					0	0	0		ENST00000462787.5_1_3:160118144-160118276:+|nuORF	ENST00000462787.5_1_3:160118144-160118276:+|nuORF	ENST00000462787.5_1_3:160118144-160118276:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7783813476562	2	512.780348	1023.54614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.985	1	39.985	39.485	40.485	0								0	0	0	0.34845	1	12949	12949		25.574	3.6142	1				43649	9750	28972	29089	44199	44199					0.035310905319988706
TRGGGHRP	8	Unmodified	_TRGGGHRP_					0	0	0		ENSG00000172732|ENST00000308110|MUS81;ENST00000530928.5_1_11:65630557-65632047:+|nuORF	ENSG00000172732|ENST00000308110|MUS81	ENSG00000172732|ENST00000308110|MUS81	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.226806640625	2	419.225543	836.436532	2.6718	0.0011201	0.55046	0.00023077	3.2223	0.0013509	419.22581091031583	24.987	0.26068	24.987	24.884	25.144	0					12	5	3	0	0	0	0.52345	1	8700	8700		57.811	0	1	1161500			43650	6378	28973	29090	44200	44200					0.01177129703319224
TRGKGRAGYT	10	Unmodified	_TRGKGRAGYT_					0	0	0			REV__nc|ENSG00000075856|Q15020-4|SART3	REV__nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7928466796875	2	533.791247	1065.56794	2.3002	0.0012278	1.0496	0.00056028	3.3498	0.0017881	533.7917167601279	30.17	0.44936	30.17	30.087	30.537	0					22	11	2	0	0	0	0.21754	1	10846	10846		77.318	77.318	1	5300700	+		43651	13242	28974	29091	44201	44201					0.037778952805638255
TRGKGRAGYT	10	Unmodified	_TRGKGRAGYT_					0	0	0			REV__nc|ENSG00000075856|Q15020-4|SART3	REV__nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7928466796875	2	533.791247	1065.56794	3.3888	0.0018089	0.14687	7.8396E-05	3.5356	0.0018873	533.7912836032455	30.123	0.31152	30.123	30.014	30.325	0					12	6	2	0	0	0	0.26198	1	11105	11105		71.877	71.877	1	3433500	+		43652	13242	28974	29091	44202	44202					0.037778952805638255
TRGKSRCEQG	10	Unmodified	_TRGKSRCEQG_					0	0	0			REV__ENST00000257181.9_1_1:52883535-52883676:+|nuORF	REV__ENST00000257181.9_1_1:52883535-52883676:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2800903320312	2	561.277646	1120.54074	1.7992	0.0010099	2.0659	0.0011596	3.8652	0.0021694	561.2791205429702	20.236	0.81549	20.236	19.927	20.743	0					34	16	5	0	0	0	0.62149	1	6385	6385		31.634	1.3165	1	462810	+		43653	17985	28975	29092	44203	44203					-0.014709563221458666
TRGQRMDITH	10	Unmodified	_TRGQRMDITH_					0	0	0			REV__ENSG00000189037|ENST00000339042|DUSP21	REV__ENSG00000189037|ENST00000339042|DUSP21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	405.5401306152344	3	405.540139	1213.59859	0.97055	0.0003936	-1.0576	-0.00042891	-0.08709	-3.5319E-05	405.53983892502816	27.089	0.38025	27.089	26.969	27.349	0					15	9	3	0	0	0	0.67464	1	9417	9417		25.126	2.5463	1	224740	+		43654	17206	28976	29093	44204	44204					0.00033305603278677154
TRGRQHEQ	8	Unmodified	_TRGRQHEQ_					0	0	0			REV__MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant	REV__MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.2567443847656	2	506.257571	1010.50059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.915	1	19.915	19.415	20.415	0								0	0	0	1.7419	1	5242	5242		34.173	5.023	1		+		43655	14101	28977	29094	44205	44205					-0.004241349303811148
TRGSFLHTA	9	Unmodified	_TRGSFLHTA_					0	0	0			REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2899475097656	2	495.261791	988.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.561	1	16.561	16.061	17.061	0								0	0	0	0.35899	1	4000	4000		23.042	0	1		+		43656	12063	28978	29095	44206	44206					0.014314189862261628
TRGVSLLN	8	Unmodified	_TRGVSLLN_					0	0	0			REV__ENSG00000069020|ENST00000403625|MAST4	REV__ENSG00000069020|ENST00000403625|MAST4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.2532043457031	2	430.253434	858.492316	-0.87595	-0.00037688	0.59664	0.00025671	-0.27931	-0.00012017	430.2536908142349	28.237	0.15078	28.237	28.15	28.3	0					7	5	2	0	0	0	0.50061	1	9090	9090		60.118	12.461	1	78767	+		43657	13159	28979	29096	44207	44207					0.05740918100298131
TRHPTCCRGD	10	Unmodified	_TRHPTCCRGD_					0	0	0			REV__nc|ENSG00000118523|P29279-2|CCN2	REV__nc|ENSG00000118523|P29279-2|CCN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.50360107421875	3	382.502808	1144.4866	-0.13899	-5.3162E-05	1.5959	0.00061043	1.4569	0.00055727	382.5036861328461	24.108	0.14426	24.108	23.994	24.138	0					8	3	3	0	0	0	0.63224	1	7469	7469		28.577	1.827	1	130770	+		43658	14222	28980	29097	44208	44208					-0.07986871745356439
TRHSFAGAAL	10	Unmodified	_TRHSFAGAAL_					0	0	0			REV__ENST00000496978.5_1_4:154143465-154143747:+|nuORF	REV__ENST00000496978.5_1_4:154143465-154143747:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7747192382812	2	515.775065	1029.53558	-1.5336	-0.000791	0.74523	0.00038437	-0.78839	-0.00040663	515.7753906111404	32.414	0.32711	32.414	32.303	32.63	0					25	10	4	0	0	0	0.39827	1	11261	11261		56.434	1.5392	1	868540	+		43659	19780	28981	29098	44209	44209					0.021991078775499773
TRISRHQF	8	Unmodified	_TRISRHQF_					0	0	0		HELB|p.R671H|1|0.12|ENSG00000127311|chr12:66318649-66318649|G/A|missense_variant	HELB|p.R671H|1|0.12|ENSG00000127311|chr12:66318649-66318649|G/A|missense_variant	HELB|p.R671H|1|0.12|ENSG00000127311|chr12:66318649-66318649|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7904663085938	2	522.788507	1043.56246	1.7977	0.00093979	1.3844	0.00072376	3.1821	0.0016636	522.78918606722	41.889	0.55032	41.889	41.564	42.114	0					38	24	2	0	0	0	0.65276	1	16503	16503		40.573	1.3198	1	95374			43660	11180	28982	29099	44210	44210					0.042422164887511826
TRKFRGSR	8	Unmodified	_TRKFRGSR_					0	0	0		nc|ENSG00000136960|Q13822-3|ENPP2;ENST00000523861.1_1_8:120584407-120592491:-|nuORF	nc|ENSG00000136960|Q13822-3|ENPP2	nc|ENSG00000136960|Q13822-3|ENPP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.8687438964844	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.454	1	50.454	49.954	50.954	0								0	0	0	1.7419	1	15169	15169		19.104	0	1				43661	11542	28983	29100	44211	44211					0.07541922725658878
TRKIRHIS	8	Unmodified	_TRKIRHIS_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.81561279296875	2	505.814525	1009.6145	2.9359	0.001485	-0.5516	-0.00027901	2.3843	0.001206	505.81425668906365	25.874	0.4517	25.874	25.633	26.085	0					17	7	3	0	0	0	0.69548	1	9084	9084		34.173	5.023	1	1332400	+		43662	17395	28984	29101	44212	44212					0.11007379902491721
TRKKVNHSR	9	Unmodified	_TRKKVNHSR_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.892333984375	3	375.891501	1124.65267	3.2481	0.0012209	-0.88052	-0.00033098	2.3676	0.00088997	375.8911608636326	25.687	0.22065	25.687	25.481	25.701	0					10	4	4	0	0	0	0.53064	1	9017	9017		29.17	29.17	1	640780			43663	1315	28985	29102	44213	44213					0.09533265817162828
TRLDIEKK	8	Unmodified	_TRLDIEKK_					0	0	0			REV__AGAP9|p.S439Lfs*10|1|0.07|ENSG00000204172|chr10:47502950-47502950|G/-|frameshift_variant	REV__AGAP9|p.S439Lfs*10|1|0.07|ENSG00000204172|chr10:47502950-47502950|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.8694763183594	3	334.869591	1001.58694	1.4919	0.00049959	-1.6351	-0.00054755	-0.14321	-4.7958E-05	334.86897091630965	12.23	0.25937	12.23	12.18	12.439	0					11	6	3	0	0	0	0.41701	1	2711	2711		69.628	0	1	950930	+		43664	12105	28986	29103	44214	44214					0.08621431851611305
TRLFPDATVP	10	Unmodified	_TRLFPDATVP_					0	0	0		sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1;sp|P12824|GH_HCMVAEnvelopeglycoproteinHOS=Humancytomegalovirus(strainAD169)OX=10360GN=gHPE=1SV=1	sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1	sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.80712890625	2	558.806031	1115.59751	1.8001	0.0010059	-0.57974	-0.00032396	1.2204	0.00068195	558.8057581072901	14.42	0.088358	14.42	14.378	14.467	0					4	2	2	0	0	0	0.41335	1	3520	3520		54.776	1.8396	1	198100			43665	22465	28987	29104	44215	44215					0.044334145060247465
TRLILEGQD	9	Unmodified	_TRLILEGQD_					0	0	0		USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant;USP38|p.L816Hfs*13|1|0.05|ENSG00000170185|chr4:143214419-143214420|-/ATCATATGAAA|frameshift_variant;nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.2903442382812	2	522.787838	1043.56112	1.5163	0.0007927	0.49106	0.00025672	2.0073	0.0010494	522.7880127473856	30.945	0.099028	30.945	30.875	30.974	0					4	2	2	0	0	0	0.18416	1	10599	10599		63.534	0	1	44867			43666	6215	28988	29105	44216	44216					0.04108537609340601
TRLLKLRYLIL	11	Unmodified	_TRLLKLRYLIL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.98150634765625	3	467.981657	1400.92314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.809	1	42.809	42.309	43.309	0								0	0	0	0.45674	1	16196	16196		3.6191	0.40774	1				43667	7618	28989	29106	44217	44217					0.23871601029895828
TRLSLGAPEPT	11	Unmodified	_TRLSLGAPEPT_					0	0	0			REV__nc|ENSG00000027869|Q9NP31-3|SH2D2A	REV__nc|ENSG00000027869|Q9NP31-3|SH2D2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	571.31396484375	2	571.31422	1140.61389	0.62247	0.00035563	-0.073257	-4.1853E-05	0.54921	0.00031377	571.3139540064839	32.554	0.16297	32.554	32.476	32.639	0					8	5	2	0	0	0	0.69524	1	11342	11342		28.081	2.0181	1	44825	+		43668	12960	28990	29107	44218	44218					0.0492049567212689
TRMRVPQAA	9	Unmodified	_TRMRVPQAA_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2861328125	2	515.284743	1028.55493	0.17658	9.0988E-05	-1.1665	-0.00060109	-0.98994	-0.0005101	515.2837815022014	29.689	0.14342	29.689	29.612	29.756	0					14	6	3	0	0	0	0.41113	1	9389	9389		40.778	0.20554	1	125450	+		43669	15191	28991	29108	44219	44219					0.04179740896825024
TRMYETKLK	9	Unmodified	_TRMYETKLK_					0	0	0		CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290;CEP290|p.R2306Nfs*40|1|0.14|ENSG00000198707|chr12:88055616-88055619|TCTC/-|frameshift_variant;CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.319091796875	2	585.320991	1168.62743	-0.28834	-0.00016877	-2.5942	-0.0015184	-2.8825	-0.0016872	585.319459657374	23.519	0.25964	23.519	23.338	23.598	0					14	9	2	0	0	0	0.58477	1	7075	7075		22.58	0.61977	1	84699			43670	484	28992	29109	44220	44220					0.049860301797025386
TRPGSLLP	8	Unmodified	_TRPGSLLP_					0	0	0		ENSG00000129173|ENST00000250024|E2F8;E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant;XCR1|p.Y14Tfs*33|1|0.3|ENSG00000173578|chr3:46021908-46021908|A/-|frameshift_variant	ENSG00000129173|ENST00000250024|E2F8	ENSG00000129173|ENST00000250024|E2F8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	420.7502746582031	2	420.750527	839.486502	1.0468	0.00044043	-1.6522	-0.00069518	-0.60547	-0.00025475	420.74983383089204	36.879	0.30183	36.879	36.713	37.015	0					12	8	2	0	0	0	0.78978	1	13914	13914		21.96	1.013	1	63321			43671	867	28993	29110	44221	44221					0.06033819588606093
TRPPGTIK	8	Unmodified	_TRPPGTIK_					0	0	0			REV__ENST00000439651.1_1_Y:3734542-3734659:-|nuORF	REV__ENST00000439651.1_1_Y:3734542-3734659:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2633972167969	2	435.263802	868.513051	0.79055	0.0003441	-1.3513	-0.00058818	-0.56077	-0.00024408	435.2630212462331	31.856	0.31622	31.856	31.701	32.017	0					18	6	4	0	0	0	0.55403	1	11992	11992		54.722	1.3709	1	476640	+		43672	19227	28994	29111	44222	44222					0.07353508479957327
TRPRCPVQ	8	Unmodified	_TRPRCPVQ_					0	0	0		ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B	ENSG00000185046|ENST00000683438|ANKS1B	ENSG00000185046|ENST00000683438|ANKS1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.758544921875	2	478.758361	955.502169	-0.25651	-0.0001228	1.4402	0.00068949	1.1837	0.00056669	478.7588660516627	15.901	0.30503	15.901	15.802	16.107	0					22	7	4	0	0	0	0.3961	1	4191	4191		71.296	7.9894	1	2162000			43673	7059	28995	29112	44223	44223					0.022637828340066335
TRPSQCQGSLP	11	Unmodified	_TRPSQCQGSLP_					0	0	0		nc|ENSG00000284690|A0A0K2S4Q6|CD300H	nc|ENSG00000284690|A0A0K2S4Q6|CD300H	nc|ENSG00000284690|A0A0K2S4Q6|CD300H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.7227172851562	2	587.287679	1172.56081	-0.19884	-0.00011677	0.16224	9.5283E-05	-0.036594	-2.1491E-05	587.2878057166448	11.123	0.10086	11.123	11.058	11.158	0					5	3	2	0	0	0	0.71641	1	2199	2199		26.063	0.48933	1	229470			43674	11817	28996	29113	44224	44224					-0.0185720538215719
TRQPQAKI	8	Unmodified	_TRQPQAKI_					0	0	0		nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2	nc|ENSG00000168092|P68402-2|PAFAH1B2	nc|ENSG00000168092|P68402-2|PAFAH1B2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.61505126953125	2	471.279983	940.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.793	1	30.793	30.293	31.293	0								0	0	0	1.7419	1	11141	11141		23.042	0	1				43675	6062	28997	29114	44225	44225					0.0727629588294576
TRQSNRPSK	9	Unmodified	_TRQSNRPSK_					0	0	0			REV__ENST00000368667.6_1_6:112101798-112114872:-|nuORF	REV__ENST00000368667.6_1_6:112101798-112114872:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2928466796875	2	537.294153	1072.57375	-1.4246	-0.00076541	-1.2049	-0.00064738	-2.6294	-0.0014128	537.2935046802529	18.157	0.32454	18.157	17.941	18.266	0					16	7	3	0	0	0	0.43488	1	4667	4667		31.53	31.53	1	265720	+		43676	18610	28998	29115	44226	44226					0.04036993792215071
TRRATGRH	8	Unmodified	_TRRATGRH_					0	0	0		ENSG00000070423|ENST00000292363|RNF126;ENST00000591394.2_1_19:651609-663133:-|nuORF	ENSG00000070423|ENST00000292363|RNF126	ENSG00000070423|ENST00000292363|RNF126	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.770751953125	2	477.770649	953.526744	-0.11719	-5.599E-05	-0.087564	-4.1836E-05	-0.20475	-9.7826E-05	477.7704276728291	15.887	0.15978	15.887	15.786	15.946	0					5	3	2	0	0	0	0.78751	1	4446	4446		12.207	1.3413	1	131820			43677	1448	28999	29116	44227	44227					0.04812179031739561
TRRLMHAHRR	10	Unmodified	_TRRLMHAHRR_					0	0	0		ENST00000361813.5_1_1:156220252-156220381:-|nuORF	ENST00000361813.5_1_1:156220252-156220381:-|nuORF	ENST00000361813.5_1_1:156220252-156220381:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	667.8801879882812	2	667.378363	1332.74217	-0.85686	-0.00057185	1.4199	0.00094759	0.56301	0.00037574	667.3798683701349	19.708	0.086163	19.708	19.65	19.737	0					5	3	2	0	0	0	0.71467	1	5392	5392		20.947	1.8434	1	47545			43678	8881	29000	29117	44228	44228					0.08911197224870193
TRRNSLSH	8	Unmodified	_TRRNSLSH_					0	0	0			REV__ENSG00000147873|ENST00000610521|IFNA5	REV__ENSG00000147873|ENST00000610521|IFNA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7606201171875	2	485.762489	969.510425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.81	1	24.81	24.31	25.31	0								0	0	0	1.7419	1	7380	7380		12.959	0	1		+		43679	15367	29001	29118	44229	44229					0.024450530749959398
TRRPQSIK	8	Unmodified	_TRRPQSIK_					0	0	0		ENST00000257336.5_1_13:103459816-103460068:+|nuORF	ENST00000257336.5_1_13:103459816-103460068:+|nuORF	ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2991027832031	2	493.298707	984.582862	-1.2671	-0.00062508	3.352	0.0016535	2.0849	0.0010285	493.30051630334026	36.741	0.22258	36.741	36.635	36.857	0					19	12	2	0	0	0	0.66989	1	12429	12429		35.618	22.659	1	104210			43680	8269	29002	29119	44230	44230					0.08995387148547707
TRRQVSPLVR	10	Unmodified	_TRRQVSPLVR_					0	0	0			REV__ENST00000469163.1_1_22:45579971-45580253:+|nuORF	REV__ENST00000469163.1_1_22:45579971-45580253:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.5837097167969	3	404.582556	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.506	1	19.506	19.006	20.006	0								0	0	0	0.38093	1	5295	5295		36.318	4.2835	1		+		43681	19451	29003	29120	44231	44231					0.12890394539772387
TRRVALVLG	9	Unmodified	_TRRVALVLG_					0	0	0			REV__PITPNM3|p.M410V|1|0.31|ENSG00000091622|chr17:6474462-6474462|T/C|missense_variant	REV__PITPNM3|p.M410V|1|0.31|ENSG00000091622|chr17:6474462-6474462|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.8815612792969	3	328.881943	983.623999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.678	1	11.678	11.178	12.178	0								0	0	0	0.33029	1	2233	2233		29.17	3.1067	1		+		43682	21377	29004	29121	44232	44232					0.13153148188018804
TRSEAAMT	8	Unmodified	_TRSEAAMT_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.7052307128906	2	433.70546	865.396366	-0.50219	-0.0002178	-0.42019	-0.00018224	-0.92237	-0.00040004	433.7054218142862	16.658	0.31035	16.658	16.549	16.859	0					9	6	2	0	0	0	0.66372	1	4665	4665		38.806	3.6054	1	627500			43683	5156	29005	29122	44233	44233					-0.04171597802132965
TRSFSLQK	8	Unmodified	_TRSFSLQK_					0	0	0			REV__TICRR|p.R1015Q|1|0.39|ENSG00000140534|chr15:89619732-89619732|G/A|missense_variant	REV__TICRR|p.R1015Q|1|0.39|ENSG00000140534|chr15:89619732-89619732|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7715148925781	2	483.771991	965.529429	0.050308	2.4338E-05	-0.67189	-0.00032504	-0.62158	-0.0003007	483.7717188853369	16.76	0.1944	16.76	16.627	16.821	0					19	7	3	0	0	0	0.58686	1	3853	3853		49.442	13.823	1	326980	+		43684	15080	29006	29123	44234	44234					0.045285896460427466
TRSKLSEIG	9	Unmodified	_TRSKLSEIG_					0	0	0		tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.78460693359375	2	495.782556	989.550559	2.8518	0.0014139	0.6518	0.00032315	3.5036	0.001737	495.78285599485406	36.261	1.1072	36.261	35.654	36.761	0					33	22	3	0	0	0	0.12834	1	14036	14036		72.879	5.3856	1	1609000			43685	22863	29007	29124	44235	44235					0.05536554954892381
TRSLPVSLE	9	Unmodified	_TRSLPVSLE_					0	0	0			REV__ENST00000371589.8_1_9:139981425-139981509:+|nuORF	REV__ENST00000371589.8_1_9:139981425-139981509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.28515625	2	501.284931	1000.55531	-0.11493	-5.7613E-05	0.13797	6.9164E-05	0.023044	1.1551E-05	501.28523888239073	35.296	0.42112	35.296	35.181	35.602	0					19	11	2	0	0	0	0.36892	1	13254	13254		44.377	5.1244	1	236620	+		43686	18655	29008	29125	44236	44236					0.05505439097657927
TRSTFKGAL	9	Unmodified	_TRSTFKGAL_					0	0	0			REV__ENST00000483599.5_1_9:131598322-131607768:-|nuORF	REV__ENST00000483599.5_1_9:131598322-131607768:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.5222473144531	3	327.522303	979.545079	0.52928	0.00017335	-0.78492	-0.00025708	-0.25565	-8.373E-05	327.52202018567795	24.396	0.27912	24.396	24.294	24.573	0					13	6	3	0	0	0	0.61124	1	8222	8222		18.262	2.929	1	1014000	+		43687	16398	29009	29126	44237	44237					0.054488761630864246
TRTHEVPSVV	10	Unmodified	_TRTHEVPSVV_					0	0	0		DNAH5|p.A1669T|1|0.17|ENSG00000039139|chr5:13850761-13850761|C/T|missense_variant	DNAH5|p.A1669T|1|0.17|ENSG00000039139|chr5:13850761-13850761|C/T|missense_variant	DNAH5|p.A1669T|1|0.17|ENSG00000039139|chr5:13850761-13850761|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.8084106445312	2	562.806562	1123.59857	-0.39491	-0.00022226	0.68353	0.0003847	0.28863	0.00016244	562.8070737297343	20.433	0.12534	20.433	20.343	20.468	0					5	3	2	0	0	0	0.56931	1	5697	5697		37.812	8.6415	1	121780			43688	816	29010	29127	44238	44238					0.04171628874951239
TRTISRVP	8	Unmodified	_TRTISRVP_					0	0	0			REV__PLCB4|p.E494Rfs*4|1|0.26|ENSG00000101333|chr20:9395586-9395587|-/A|frameshift_variant	REV__PLCB4|p.E494Rfs*4|1|0.26|ENSG00000101333|chr20:9395586-9395587|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.27972412109375	2	465.279983	928.545414	-0.69036	-0.00032121	0.27565	0.00012826	-0.41471	-0.00019296	465.28004746076954	50.802	0.22966	50.802	50.731	50.96	0					18	14	2	0	0	0	0.79719	1	18239	18239		18.324	0	1	68830	+		43689	13597	29011	29128	44239	44239					0.07828295882939074
TRTLLTPKQ	9	Unmodified	_TRTLLTPKQ_					0	0	0		ENST00000395135.7_1_15:74335345-74335513:+|nuORF	ENST00000395135.7_1_15:74335345-74335513:+|nuORF	ENST00000395135.7_1_15:74335345-74335513:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.8236694335938	2	529.321848	1056.62914	1.1721	0.00062043	-0.83902	-0.00044411	0.3331	0.00017632	529.3212161083563	21.619	0.6016	21.619	21.506	22.107	0					51	18	5	0	0	0	0.43488	1	6129	6129		38.754	0	1	28308000			43690	9190	29012	29129	44240	44240					0.10309407259978798
TRVFTDPSK	9	Unmodified	_TRVFTDPSK_					0	0	0			REV__ENST00000561092.1_1_15:76580145-76584849:-|nuORF	REV__ENST00000561092.1_1_15:76580145-76584849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7855834960938	2	525.782556	1049.55056	5.297	0.0027851	-0.90301	-0.00047479	4.394	0.0023103	525.7822043702124	18.452	0.12265	18.452	18.391	18.514	0					11	4	3	0	0	0	0.10915	1	4816	4816		77.318	0	1	394440	+		43691	15071	29013	29130	44241	44241					0.027765549548803392
TRVRTASIW	9	Unmodified	_TRVRTASIW_					0	0	0		nc|ENSG00000090612|Q14587-8|ZNF268;nc|ENSG00000090612|Q14587-7|ZNF268;ENST00000541975.2_2_12:133758174-133764492:+|nuORF;ENST00000500625.7_3_12:133758097-133764492:+|nuORF;nc|ENSG00000090612|Q14587-4|ZNF268;nc|ENSG00000090612|Q14587-6|ZNF268;ENST00000537973.5_1_12:133758174-133764682:+|nuORF;ZNF268|p.K199Nfs*12|1|0.37|ENSG00000090612|chr12:133202279-133202279|A/-|frameshift_variant;ENSG00000090612|ENST00000536435|ZNF268	nc|ENSG00000090612|Q14587-8|ZNF268	nc|ENSG00000090612|Q14587-8|ZNF268	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.312255859375	2	545.311815	1088.60908	0.39206	0.0002138	-0.94094	-0.00051311	-0.54888	-0.00029931	545.3113413734964	41.997	0.14157	41.997	41.92	42.062	0					12	7	2	0	0	0	0.36892	1	15924	15924		44.377	1.5129	1	189630			43692	11448	29014	29131	44242	44242					0.0683165632001419
TRVTGTRTAS	10	Unmodified	_TRVTGTRTAS_					0	0	0		ENST00000394089.6_1_17:38504687-38506114:+|nuORF	ENST00000394089.6_1_17:38504687-38506114:+|nuORF	ENST00000394089.6_1_17:38504687-38506114:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2882080078125	2	525.288537	1048.56252	-1.2438	-0.00065333	-0.53781	-0.00028251	-1.7816	-0.00093584	525.2890468254963	40.433	0.51134	40.433	40.268	40.779	0					50	28	3	0	0	0	0.55031	1	14355	14355		35.152	35.152	1	466120			43693	9169	29015	29132	44243	44243					0.04018171698066908
TRVTKEHVK	9	Unmodified	_TRVTKEHVK_					0	0	0			REV__ENSG00000138823|ENST00000265517|MTTP	REV__ENSG00000138823|ENST00000265517|MTTP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.3234252929688	2	549.324922	1096.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.903	1	25.903	25.403	26.403	0								0	0	0	0.31838	1	8078	8078		31.53	0	1		+		43694	15004	29016	29133	44244	44244					0.09083925491495393
TRVVEPLFS	9	Unmodified	_TRVVEPLFS_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2962036132812	2	524.295299	1046.57605	1.1375	0.0005964	0.41394	0.00021703	1.5515	0.00081343	524.2956546150883	32.242	0.25765	32.242	32.108	32.366	0					13	7	2	0	0	0	0.56424	1	11157	11157		25.574	1.0549	1	85959	+		43695	14234	29017	29134	44245	44245					0.054620294773030764
TRWVRPRV	8	Unmodified	_TRWVRPRV_					0	0	0		ENST00000496425.1_1_20:62373927-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.3222045898438	2	535.322517	1068.63048	-1.3619	-0.00072904	0.79851	0.00042746	-0.56336	-0.00030158	535.3229086063232	22.948	0.35578	22.948	22.767	23.123	0					18	8	3	0	0	0	0.74405	1	6874	6874		27.882	27.882	1	427590			43696	10117	29018	29135	44246	44246					0.09891086139418803
TRYPGPGPL	9	Unmodified	_TRYPGPGPL_					0	0	0			REV__nc|ENSG00000241350|Q13670|PMS2P11	REV__nc|ENSG00000241350|Q13670|PMS2P11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2608642578125	2	479.261259	956.507966	0.66217	0.00031735	-1.6639	-0.00079742	-1.0017	-0.00048006	479.2604087343067	31.757	0.39527	31.757	31.653	32.048	0					11	8	2	0	0	0	0.35045	1	12020	12020		45.952	8.7928	1	617640	+		43697	21224	29019	29136	44247	44247					0.02797204617343141
TRYVTAIV	8	Unmodified	_TRYVTAIV_					0	0	0			REV__ENSG00000135312|ENST00000369947|HTR1B	REV__ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.77117919921875	2	461.77146	921.528367	-0.19428	-8.9712E-05	-0.6669	-0.00030795	-0.86118	-0.00039767	461.77100301439697	35.678	0.16563	35.678	35.597	35.762	0					9	6	2	0	0	0	0.75243	1	12726	12726		26.796	0	1	45223	+		43698	14793	29020	29137	44248	44248					0.0644637527714167
TRYVTAIVF	9	Unmodified	_TRYVTAIVF_					0	0	0			REV__ENSG00000135312|ENST00000369947|HTR1B	REV__ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3065185546875	2	535.305667	1068.59678	0.17536	9.387E-05	1.4836	0.00079416	1.6589	0.00088803	535.3062983543925	45.925	0.11653	45.925	45.859	45.976	0					11	7	2	0	0	0	0.41113	1	17037	17037		40.778	3.6191	1	54253	+		43699	14793	29021	29138	44249	44249					0.06522619856991696
TSAADLTSSGI	11	Unmodified	_TSAADLTSSGI_					0	0	0		ENST00000474513.6_1_3:63850583-63884133:+|nuORF	ENST00000474513.6_1_3:63850583-63884133:+|nuORF	ENST00000474513.6_1_3:63850583-63884133:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	341.8426513671875	3	341.504866	1021.49277	3.0237	0.0010326	1.0521	0.0003593	4.0758	0.0013919	341.5043298680755	15.097	0.36976	15.097	14.928	15.297	0					21	7	4	0	0	0	0.58789	1	3866	3866		26.75	0	1	778040			43700	9896	29022	29139	44250	44250					-0.017117517611836774
TSAAIYHVL	9	Unmodified	_TSAAIYHVL_					0	0	0		STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.76849365234375	2	487.768917	973.523281	0.80288	0.00039162	-1.7552	-0.00085613	-0.9523	-0.0004645	487.76791126137647	38.026	0.1524	38.026	37.886	38.039	0					9	3	3	0	0	0	0.025517	1	14906	14906		123.99	54.361	1	172150			43701	3951	29023	29140	44251	44251					0.03546071414530161
TSADRLMLNK	10	Unmodified	_TSADRLMLNK_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.5401611328125	3	383.541257	1147.60194	-0.567	-0.00021747	-2.6083	-0.0010004	-3.1753	-0.0012179	383.5402547535223	21.945	0.26514	21.945	21.84	22.105	0					14	5	4	0	0	0	0.57211	1	7235	7235		37.508	2.3561	1	2796700	+		43702	21030	29024	29141	44252	44252					0.03404555657311903
TSAFMPVLK	9	Unmodified	_TSAFMPVLK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2752380371094	2	497.275521	992.536489	0.70974	0.00035294	-1.1566	-0.00057516	-0.44688	-0.00022222	497.27491859240735	39.773	0.2093	39.773	39.682	39.891	0					14	8	2	0	0	0	0.047412	1	15155	15155		96.19	30.387	1	106100			43703	4281	29025	29142	44253	44253					0.03992186202265202
TSAFMPVLK	9	Unmodified	_TSAFMPVLK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.27581787109375	2	497.275521	992.536489	-0.029439	-1.4639E-05	-0.31222	-0.00015526	-0.34166	-0.0001699	497.27543105814874	39.744	0.21918	39.744	39.656	39.875	0					12	7	2	0	0	0	0.063823	1	15661	15661		90.37	34.866	1	95891			43704	4281	29025	29142	44254	44254					0.03992186202265202
TSAFMPVLK	9	Unmodified	_TSAFMPVLK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2751159667969	2	497.275521	992.536489	-0.70299	-0.00034958	0.15217	7.5671E-05	-0.55082	-0.00027391	497.2754060423842	39.709	0.37514	39.709	39.438	39.813	0					13	8	2	0	0	0	0.034359	1	15723	15723		104.75	33.369	1	220280			43705	4281	29025	29142	44255	44255					0.03992186202265202
TSAGASCSPR	10	Unmodified	_TSAGASCSPR_					0	0	0			REV__nc|ENSG00000163564|Q6K0P9-4|PYHIN1;REV__nc|ENSG00000163564|Q6K0P9-6|PYHIN1	REV__nc|ENSG00000163564|Q6K0P9-6|PYHIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7140808105469	2	468.713816	935.413079	0.63066	0.0002956	-0.46585	-0.00021835	0.1648	7.7246E-05	468.7135838452821	35.327	3.2963	35.327	33.799	37.095	0					130	92	2	0	0	0	0.56931	1	14053	14053		37.812	7.3079	1	120110	+		43706	15895;21094	29026	29143	44256	44256					-0.057210969161587855
TSALALLGKP	10	Unmodified	_TSALALLGKP_					0	0	0			REV__ENST00000404251.1_1_7:72856149-72856371:-|nuORF	REV__ENST00000404251.1_1_7:72856149-72856371:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7992858886719	2	485.800217	969.585882	0.64886	0.00031521	-0.85522	-0.00041546	-0.20636	-0.00010025	485.79992167462166	33.014	1.1356	33.014	32.555	33.69	0					99	27	5	0	0	0	0.37692	1	12847	12847		58.782	0	1	58814000	+		43707	18965	29027	29144	44257	44257					0.09987217482728283
TSALFQLKK	9	Unmodified	_TSALFQLKK_					0	0	0			REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|40|2|sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|40|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.3154907226562	2	518.313492	1034.61243	0.94988	0.00049233	2.4624	0.0012763	3.4123	0.0017686	518.3148972734277	19.972	0.27264	19.972	19.827	20.1	0					15	6	4	0	0	0	0.30951	1	5560	5560		49.442	0	1	1230100	+		43708	20740	29028	29145	44258	44258					0.09650906374031365
TSALFQLKK	9	Unmodified	_TSALFQLKK_					0	0	0			REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|40|2|sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|40|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.3152465820312	2	518.313492	1034.61243	3.3424	0.0017324	-0.36197	-0.00018761	2.9804	0.0015448	518.3134225286356	20.12	0.46634	20.12	20.011	20.477	0					24	9	4	0	0	0	0.14603	1	6325	6325		68.787	10.005	1	13897000	+		43709	20740	29028	29145	44259	44259					0.09650906374031365
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7999572753906	2	485.800217	969.585882	-0.025003	-1.2147E-05	-0.22627	-0.00010992	-0.25128	-0.00012207	485.8002197805762	32.76	1.6217	32.76	32.398	34.02	0					190	65	6	0	0	0	0.0061615	4	10637	10499;10637;10760;10793		153.04	55.563	1	29853000			43710	4803	29029	29146	44260;44261;44262;44263	44261					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.8004150390625	2	485.800217	969.585882	0.020831	1.012E-05	-0.29914	-0.00014532	-0.27831	-0.0001352	485.8000045460115	32.807	0.34784	32.807	32.617	32.965	0					21	13	2	0	0	0	0.24095	1	10610	10610		56.721	1.9447	1	133850			43711	4803	29029	29146	44264	44264					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.80010986328125	2	485.800217	969.585882	0.67512	0.00032797	-1.1225	-0.00054531	-0.44739	-0.00021734	485.7998394893754	33.088	1.8801	33.088	32.625	34.505	0					161	49	6	0	0	0	0.00024018	3	12097	12097;12258;12422		190.52	75.059	1	143600000			43712	4803	29029	29146	44265;44266;44267	44265					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.79998779296875	2	485.800217	969.585882	-1.2392	-0.000602	0.70441	0.0003422	-0.53478	-0.0002598	485.80059911681593	32.828	1.1634	32.828	32.438	33.602	0					143	46	5	0	0	0	9.7043E-06	1	11005	11005		205.58	95.462	1	11550000			43713	4803	29029	29146	44268	44268					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.8003845214844	2	485.800217	969.585882	0.64886	0.00031521	-0.85522	-0.00041546	-0.20636	-0.00010025	485.79992167462166	33.014	1.1356	33.014	32.555	33.69	0					99	27	5	0	0	0	0.00068477	2	12651	12473;12651		186.09	70.63	1	58814000			43714	4803	29029	29146	44269;44270	44270					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.8005676269531	2	485.800217	969.585882	-0.2453	-0.00011917	0.231	0.00011222	-0.014306	-6.9497E-06	485.80046571785334	32.845	1.4451	32.845	32.417	33.862	0					122	42	5	0	0	0	0.0017279	3	11477	11306;11477;11645		176.09	42.274	1	25471000			43715	4803	29029	29146	44271;44272;44273	44272					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.8000183105469	2	485.800217	969.585882	-0.55978	-0.00027194	0.31107	0.00015112	-0.24871	-0.00012082	485.80052200196417	33.027	1.8879	33.027	32.472	34.36	0					129	39	5	0	0	0	0.0061615	5	12399	12399;12586;12755;12931;13123		153.04	61.032	1	111900000			43716	4803	29029	29146	44274;44275;44276;44277;44278	44274					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.80084228515625	2	485.800217	969.585882	-0.56114	-0.0002726	3.2057	0.0015573	2.6446	0.0012847	485.8018162553323	34.689	1.9534	34.689	34.393	36.346	0					60	39	3	0	0	0	0.39215	1	13551	13551		42.396	3.1433	1	943690			43717	4803	29029	29146	44279	44279					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.8000793457031	2	485.800217	969.585882	0.83604	0.00040615	-0.9925	-0.00048215	-0.15645	-7.6005E-05	485.7998454053883	33.051	1.1429	33.051	32.557	33.7	0					95	23	5	0	0	0	0.0033339	3	12530	12350;12530;12722		166.68	49.775	1	151290000			43718	4803	29029	29146	44280;44281;44282	44281					0.09987217482716915
TSALPLSAVL	10	Unmodified	_TSALPLSAVL_					0	0	0			REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.29254150390625	2	486.292225	970.569897	-0.55257	-0.00026871	1.2867	0.00062569	0.73408	0.00035698	486.29291186433863	34.365	0.40517	34.365	34.15	34.555	0					20	8	3	0	0	0	0.22198	1	13146	13146		76.774	14.667	1	428010	+		43719	18502	29030	29147	44283	44283					0.08343511245811897
TSALTVGP	8	Unmodified	_TSALTVGP_					0	0	0			REV__ENST00000399976.6_1_21:30396952-30400215:+|nuORF	REV__ENST00000399976.6_1_21:30396952-30400215:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20941162109375	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.754	1	50.754	50.254	51.254	0								0	0	0	1.7419	1	19963	19963		35.201	6.9464	1		+		43720	18940	29031	29148	44284	44284					0.01934449052009768
TSAMTAASLN	10	Unmodified	_TSAMTAASLN_					0	0	0		ELMO3|p.T760Pfs*31|1|0.22|ENSG00000102890|chr16:67203827-67203827|C/-|frameshift_variant	ELMO3|p.T760Pfs*31|1|0.22|ENSG00000102890|chr16:67203827-67203827|C/-|frameshift_variant	ELMO3|p.T760Pfs*31|1|0.22|ENSG00000102890|chr16:67203827-67203827|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7314147949219	2	483.731674	965.448796	-0.097427	-4.7129E-05	0.03775	1.8261E-05	-0.059677	-2.8867E-05	483.7315688288201	20.638	0.21755	20.638	20.529	20.747	0					7	4	2	0	0	0	0.64162	1	6730	6730		29.17	1.0886	1	143790			43721	906	29032	29149	44285	44285					-0.03531059459169228
TSANVTIRK	9	Unmodified	_TSANVTIRK_					0	0	0		CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant;CKAP2|p.R384Gfs*6|1|0.18|ENSG00000136108|chr13:52462405-52462405|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-4|CKAP2;CKAP2|p.T579Pfs*11|1|0.07|ENSG00000136108|chr13:52474011-52474011|A/-|frameshift_variant;CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.2902526855469	2	495.290548	988.566543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.302	1	17.302	16.802	17.802	0								0	0	0	0.1568	1	4101	4101		58.246	8.2217	1				43722	545	29033	29150	44286	44286					0.07180261191820136
TSANVTIRK	9	Unmodified	_TSANVTIRK_					0	0	0		CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant;CKAP2|p.R384Gfs*6|1|0.18|ENSG00000136108|chr13:52462405-52462405|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-4|CKAP2;CKAP2|p.T579Pfs*11|1|0.07|ENSG00000136108|chr13:52474011-52474011|A/-|frameshift_variant;CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	CKAP2|p.T295Qfs*14|1|0.12|ENSG00000136108|chr13:52461702-52461702|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2903747558594	2	495.290548	988.566543	-0.40481	-0.0002005	0.1089	5.3938E-05	-0.2959	-0.00014656	495.2904312470201	17.616	0.16921	17.616	17.527	17.696	0					9	4	3	0	0	0	0.046074	1	5007	5007		96.665	27.037	1	690860			43723	545	29033	29150	44287	44287					0.07180261191820136
TSAPAAKPK	9	Unmodified	_TSAPAAKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.7554626464844	2	435.75581	869.497067	-0.27463	-0.00011967	-0.27035	-0.00011781	-0.54498	-0.00023748	435.75568402526284	12.508	0.059248	12.508	12.451	12.511	0					5	3	2	0	0	0	0.24095	1	2380	2380		56.721	7.2795	1	84759			43724	7298	29034	29151	44288	44288					0.0570980224304094
TSAPAAKPK	9	Unmodified	_TSAPAAKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.7556457519531	2	435.75581	869.497067	-0.42008	-0.00018305	-0.20972	-9.1389E-05	-0.62981	-0.00027444	435.7557570977564	12.755	0.39254	12.755	12.653	13.046	0					25	11	4	0	0	0	0.098791	1	2736	2736		79.713	5.4575	1	2874600			43725	7298	29034	29151	44289	44289					0.0570980224304094
TSAPAAKPK	9	Unmodified	_TSAPAAKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.75518798828125	2	435.75581	869.497067	-1.0208	-0.00044484	0.77209	0.00033644	-0.24875	-0.00010839	435.7559358241765	12.491	0.11075	12.491	12.437	12.547	0					12	6	3	0	0	0	0.22377	1	2470	2470		58.782	7.4465	1	275930			43726	7298	29034	29151	44290	44290					0.0570980224304094
TSAPAAKPK	9	Unmodified	_TSAPAAKPK_					0	0	0		ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	ENSG00000189060|ENST00000340857|H1-0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.75555419921875	2	435.75581	869.497067	0.3519	0.00015334	-0.76468	-0.00033322	-0.41279	-0.00017987	435.75546326051773	12.747	0.3538	12.747	12.659	13.012	0					19	8	4	0	0	0	0.023928	1	2952	2952		115.49	10.747	1	2504600			43727	7298	29034	29151	44291	44291					0.0570980224304094
TSAQLQHYQP	10	Unmodified	_TSAQLQHYQP_					0	0	0			REV__SUPT6H|p.T1632A|1|0.39|ENSG00000109111|chr17:28701028-28701028|A/G|missense_variant	REV__SUPT6H|p.T1632A|1|0.39|ENSG00000109111|chr17:28701028-28701028|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.52783203125	3	391.528005	1171.56219	0.35564	0.00013924	-0.67259	-0.00026334	-0.31695	-0.0001241	391.52768696361215	16.322	0.31831	16.322	16.213	16.531	0					14	6	3	0	0	0	0.69166	1	4652	4652		21.686	0.8486	1	2800000	+		43728	13895	29035	29152	44292	44292					-0.016732480217797274
TSAQPAMRQ	9	Unmodified	_TSAQPAMRQ_					0	0	0			REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant	REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	330.5006103515625	3	330.499281	988.476014	3.0052	0.00099322	0.79551	0.00026292	3.8007	0.0012561	330.49960642815086	22.812	0.21759	22.812	22.705	22.922	0					11	4	4	0	0	0	0.41113	1	7658	7658		47.96	16.43	1	779020	+		43729	13894	29036	29153	44293	44293					-0.018685311281160466
TSAQTERVPLD	11	Unmodified	_TSAQTERVPLD_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	608.8123779296875	2	608.812042	1215.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.511	1	30.511	30.011	31.011	0								0	0	0	0.32997	1	10030	10030		47.96	3.5823	1				43730	5319	29037	29154	44294	44294					0.010349864585805335
TSASRALGGPA	11	Unmodified	_TSASRALGGPA_					0	0	0		ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF	ENST00000473958.1_1_3:128208233-128208692:+|nuORF	ENST00000473958.1_1_3:128208233-128208692:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2650146484375	2	494.26453	986.514508	0.76053	0.0003759	0.82974	0.00041011	1.5903	0.00078601	494.26481607662436	23.36	0.1533	23.36	23.263	23.417	0					5	3	2	0	0	0	0.37057	1	7734	7734		54.722	19.57	1	522770			43731	9811	29038	29155	44295	44295					0.0207109777804817
TSASSSKKP	9	Unmodified	_TSASSSKKP_					0	0	0		ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3	ENSG00000144218|ENST00000672756|AFF3	ENSG00000144218|ENST00000672756|AFF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.53228759765625	2	446.740357	891.46616	-0.43641	-0.00019496	0.12239	5.4676E-05	-0.31402	-0.00014028	446.74037064742055	16.9	0.20852	16.9	16.796	17.005	0					7	4	2	0	0	0	0.42902	1	4763	4763		39.253	1.4413	1	339390			43732	4604	29039	29156	44296	44296					0.01608604138152714
TSASVPPAAP	10	Unmodified	_TSASVPPAAP_					0	0	0			REV__PHLDA1|p.C171Vfs*246|1|0.2|ENSG00000139289|chr12:76031232-76031233|-/T|frameshift_variant	REV__PHLDA1|p.C171Vfs*246|1|0.2|ENSG00000139289|chr12:76031232-76031233|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.2384033203125	2	449.23745	896.460347	0.13272	5.9623E-05	0.24347	0.00010937	0.37619	0.000169	449.23765981193685	23.76	0.10684	23.76	23.661	23.768	0					4	2	2	0	0	0	0.28723	1	7902	7902		68.787	1.2932	1	94856	+		43733	21367	29040	29157	44297	44297					0.007975056264740488
TSAVEGKGQ	9	Unmodified	_TSAVEGKGQ_					0	0	0			REV__ENST00000479516.1_1_6:37321940-37337593:+|nuORF	REV__ENST00000479516.1_1_6:37321940-37337593:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.7247314453125	2	438.724707	875.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.449	1	14.449	13.949	14.949	0								0	0	0	0.21054	1	3521	3521		49.442	0	1		+		43734	13991	29041	29158	44298	44298					-0.007839688959279556
TSAVTTRRN	9	Unmodified	_TSAVTTRRN_					0	0	0			REV__nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	REV__nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2774658203125	2	503.275429	1004.53631	-0.064978	-3.2702E-05	3.2101	0.0016156	3.1451	0.0015828	503.2768716687615	32.537	0.61353	32.537	32.291	32.904	0					25	15	3	0	0	0	0.21263	1	11944	11944		60.118	10.677	1	338020	+		43735	21144	29042	29159	44299	44299					0.03421902526622489
TSAYGALSLI	10	Unmodified	_TSAYGALSLI_					0	0	0		RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2733459472656	2	498.274032	994.533512	0.82398	0.00041057	-1.5944	-0.00079445	-0.77041	-0.00038388	498.27352972047134	38.473	0.40536	38.473	38.361	38.766	0					33	14	4	0	0	0	0.17732	1	15087	15087		82.241	3.9767	1	1039900			43736	3805	29043	29160	44300	44300					0.03602634349113032
TSCPCKFAVV	10	Unmodified	_TSCPCKFAVV_					0	0	0			REV__ENSG00000178033|ENST00000368599|CALHM5	REV__ENSG00000178033|ENST00000368599|CALHM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.756103515625	2	527.756638	1053.49872	2.1422	0.0011305	-2.4085	-0.0012711	-0.26629	-0.00014054	527.7552797952663	39.174	0.16994	39.174	39.09	39.26	0					14	6	3	0	0	0	0.24256	1	14895	14895		74.255	15.473	1	130940	+		43737	16719	29044	29161	44301	44301					-0.02588648054870646
TSCRGRAW	8	Carbamidomethyl (C)	_TSC(Carbamidomethyl (C))RGRAW_	TSC(1)RGRAW		TSC(46)RGRAW		0	1	0			REV__GPRIN1|p.K629Efs*117|1|0.67|ENSG00000169258|chr5:176597950-176597951|-/C|frameshift_variant	REV__GPRIN1|p.K629Efs*117|1|0.67|ENSG00000169258|chr5:176597950-176597951|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2358093261719	2	497.237793	992.461032	-2.3032	-0.0011453	-2.4915	-0.0012389	-4.7947	-0.0023841	497.2365112177955	26.7	0.19547	26.7	26.625	26.82	0					6	4	2	0	0	0	0.61938	1	8660	8660		45.952	6.6991	1	63297	+		43738	20702	29045	29162	44302	44302	717				-0.035499782054671414
TSDASSKRPSP	11	Unmodified	_TSDASSKRPSP_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	378.19091796875	3	378.191282	1131.55202	-0.72537	-0.00027433	-1.3194	-0.00049898	-2.0448	-0.00077331	378.1909870432686	34.089	0.09528	34.089	33.996	34.092	0					8	3	3	0	0	0	0.66915	1	11473	11473		30.569	1.0181	1	57640	+		43739	14775	29046	29163	44303	44303					-0.008498557469920343
TSDLRISVWVG	11	Unmodified	_TSDLRISVWVG_					0	0	0			REV__ENSG00000138834|ENST00000610761|MAPK8IP3;REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	411.5590515136719	3	411.559305	1231.65609	0.64769	0.00026656	-1.2396	-0.00051015	-0.59186	-0.00024359	411.55882657500683	29.445	0.14271	29.445	29.388	29.531	0					8	4	2	0	0	0	0.77686	1	9313	9313		23.378	4.1152	1	134800	+		43740	20919;15005	29047	29164	44304	44304					0.04952471080491705
TSDLWTQAK	9	Unmodified	_TSDLWTQAK_					0	0	0			REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2673950195312	2	525.266739	1048.51892	0.095806	5.0324E-05	0.58076	0.00030505	0.67656	0.00035538	525.2670536571237	25.053	0.21784	25.053	24.93	25.148	0					10	5	2	0	0	0	0.2873	1	8499	8499		51.335	1.8939	1	1115400	+		43741	20148	29048	29165	44305	44305					-0.00339437799038933
TSDSKEAK	8	Unmodified	_TSDSKEAK_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.2165222167969	2	433.216714	864.418876	-0.49596	-0.00021486	0.025809	1.1181E-05	-0.47015	-0.00020368	433.2166975851434	15.272	0.26767	15.272	15.162	15.429	0					6	5	2	0	0	0	0.66372	1	4003	4003		38.806	0	1	165730			43742	4357	29049	29166	44306	44306					-0.01875675132851029
TSDTKVVQ	8	Unmodified	_TSDTKVVQ_					0	0	0		POLQ|p.K1013T|1|0.06|ENSG00000051341|chr3:121489893-121489893|T/G|missense_variant	POLQ|p.K1013T|1|0.06|ENSG00000051341|chr3:121489893-121489893|T/G|missense_variant	POLQ|p.K1013T|1|0.06|ENSG00000051341|chr3:121489893-121489893|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.23468017578125	2	439.234907	876.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.167	1	15.167	14.667	15.667	0								0	0	0	1.7419	1	4092	4092		99.375	3.5598	1				43743	11948	29050	29167	44307	44307					0.012092017638678954
TSEGGKCRR	9	Carbamidomethyl (C)	_TSEGGKC(Carbamidomethyl (C))RR_	TSEGGKC(1)RR		TSEGGKC(63)RR		0	1	0		ENST00000220244.7_1_15:81241617-81241845:+|nuORF	ENST00000220244.7_1_15:81241617-81241845:+|nuORF	ENST00000220244.7_1_15:81241617-81241845:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.759033203125	2	525.759089	1049.50363	0.098102	5.1578E-05	-0.062528	-3.2874E-05	0.035574	1.8703E-05	525.7591384530537	19.782	1.145	19.782	19.554	20.699	0					54	25	3	0	0	0	0.18605	1	6015	6015		63.306	6.5852	1	2548200			43744	8176	29051	29168	44308	44308	356				-0.019146278678817907
TSELPYRKS	9	Unmodified	_TSELPYRKS_					0	0	0			REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.2911376953125	2	540.787838	1079.56112	2.0009	0.0010821	-1.3318	-0.00072024	0.66912	0.00036185	541.2888251639176	20.634	0.5692	20.634	20.212	20.781	0					14	11	2	0	0	0	0.54267	1	6726	6726		27.882	2.3082	1	391610	+		43745	16982	29052	29169	44309	44309					0.024525376093151863
TSEPATPQL	9	Unmodified	_TSEPATPQL_					0	0	0			REV__ENST00000606261.1_1_7:26224125-26225400:+|nuORF	REV__ENST00000606261.1_1_7:26224125-26225400:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2398376464844	2	472.24019	942.465826	-0.56524	-0.00026693	-1.1603	-0.00054795	-1.7256	-0.00081487	472.23974025077194	23.442	0.31799	23.442	23.284	23.602	0					12	6	3	0	0	0	0.26904	1	7965	7965		53.351	10.877	1	312950	+		43746	13031	29053	29170	44310	44310					-0.007708155817113038
TSEVTYIW	8	Unmodified	_TSEVTYIW_					0	0	0		ENSG00000151834|ENST00000381620|GABRA2;nc|ENSG00000151834|P47869-2|GABRA2	ENSG00000151834|ENST00000381620|GABRA2	ENSG00000151834|ENST00000381620|GABRA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2923583984375	2	499.745108	997.475663	-0.64158	-0.00032062	1.5764	0.00078781	0.93484	0.00046718	499.74612490959476	12.584	0.37588	12.584	12.254	12.63	0					10	9	2	0	0	0	0.70055	1	2856	2856		33.516	1.5607	1	970590			43747	4989	29054	29171	44311	44311					-0.023176275763375997
TSFAKYKGQ	9	Unmodified	_TSFAKYKGQ_					0	0	0			REV__OR7A5|p.M284Cfs*2|1|0.15|ENSG00000188269|chr19:14827393-14827393|G/-|frameshift_variant	REV__OR7A5|p.M284Cfs*2|1|0.15|ENSG00000188269|chr19:14827393-14827393|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8489685058594	3	343.850308	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.428	1	13.428	12.928	13.928	0								0	0	0	0.38913	1	3113	3113		14.137	1.3254	1		+		43748	17162	29055	29172	44312	44312					0.015971699261854155
TSFDGSLIQK	10	Unmodified	_TSFDGSLIQK_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2879638671875	2	548.287671	1094.56079	1.2444	0.00068229	-0.97293	-0.00053345	0.27147	0.00014884	548.2871987368878	33.529	0.26029	33.529	33.398	33.658	0					22	9	3	0	0	0	0.014024	1	10900	10900		129.42	49.97	1	676050			43749	6670	29056	29173	44313	44313					0.017291178894765835
TSFDGSLIQK	10	Unmodified	_TSFDGSLIQK_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2882690429688	2	548.287671	1094.56079	0.48291	0.00026478	2.3013	0.0012618	2.7842	0.0015266	548.2893948214373	33.777	0.57033	33.777	33.649	34.219	0					23	15	2	0	0	0	0.00017198	1	12510	12510		190.62	70.001	1	3507200			43750	6670	29056	29173	44314	44314					0.017291178894765835
TSFDGSLIQK	10	Unmodified	_TSFDGSLIQK_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2879638671875	2	548.287671	1094.56079	0.39993	0.00021928	1.7083	0.00093664	2.1082	0.0011559	548.2887637431288	33.571	0.48402	33.571	33.461	33.945	0					49	18	4	0	0	0	0.01518	1	11264	11264		128.6	54.347	1	1414600			43751	6670	29056	29173	44315	44315					0.017291178894765835
TSFDGSLIQK	10	Unmodified	_TSFDGSLIQK_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2879028320312	2	548.287671	1094.56079	1.7842	0.00097824	0.41561	0.00022788	2.1998	0.0012061	548.2879033210614	33.762	0.78399	33.762	33.561	34.345	0					43	19	3	0	0	0	0.002607	1	12935	12935		173.39	69.378	1	9332800			43752	6670	29056	29173	44316	44316					0.017291178894765835
TSFDGSLIQK	10	Unmodified	_TSFDGSLIQK_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2880249023438	2	548.287671	1094.56079	1.1567	0.00063419	-0.049137	-2.6941E-05	1.1075	0.00060725	548.2875729547975	33.537	0.36706	33.537	33.451	33.818	0					26	10	4	0	0	0	0.0081296	1	11772	11772		152.06	67.145	1	1335400			43753	6670	29056	29173	44317	44317					0.017291178894765835
TSFDGSLIQK	10	Unmodified	_TSFDGSLIQK_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2879638671875	2	548.287671	1094.56079	1.8642	0.0010221	-1.7149	-0.00094025	0.14929	8.1851E-05	548.2866474826209	33.698	0.81775	33.698	33.332	34.15	0					38	17	3	0	0	0	0.00017198	1	12843	12843		190.62	72.811	1	3588700			43754	6670	29056	29173	44318	44318					0.017291178894765835
TSFDLQVQ	8	Unmodified	_TSFDLQVQ_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2344970703125	2	469.234907	936.455261	0.42227	0.00019814	-0.9678	-0.00045413	-0.54553	-0.00025598	469.2343700850353	18.897	0.17726	18.897	18.816	18.993	0					11	5	3	0	0	0	0.54629	1	5607	5607		55.504	7.5886	1	135850	+		43755	15268	29057	29174	44319	44319					-0.015507982361327777
TSFIGGGFIV	10	Unmodified	_TSFIGGGFIV_					0	0	0			REV__tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	REV__tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2722473144531	2	499.271293	996.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.921	1	40.921	40.421	41.421	0								0	0	0	0.37816	1	16091	16091		37.159	0	1		+		43756	22204	29058	29175	44320	44320					0.02962955557291025
TSFISPFAK	9	Unmodified	_TSFISPFAK_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.27142333984375	2	499.271293	996.528032	-0.73618	-0.00036756	1.3287	0.00066337	0.5925	0.00029582	499.272106037628	40.771	0.28937	40.771	40.67	40.959	0					8	4	2	0	0	0	0.27249	1	16205	16205		52.937	6.9645	1	107520			43757	7586	29059	29176	44321	44321					0.029629555572796562
TSFRDTSL	8	Unmodified	_TSFRDTSL_					0	0	0		nc|ENSG00000204764|Q9H2T7-2|RANBP17;RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF	nc|ENSG00000204764|Q9H2T7-2|RANBP17	nc|ENSG00000204764|Q9H2T7-2|RANBP17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.73211669921875	2	463.732532	925.45051	0.059503	2.7594E-05	-0.012122	-5.6214E-06	0.047381	2.1972E-05	463.73264605549537	26.855	0.14674	26.855	26.729	26.875	0					6	3	2	0	0	0	0.54629	1	9292	9292		55.504	0	1	104690			43758	7723	29060	29177	44322	44322					-0.015196823788983238
TSFRDTSL	8	Unmodified	_TSFRDTSL_					0	0	0		nc|ENSG00000204764|Q9H2T7-2|RANBP17;RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF	nc|ENSG00000204764|Q9H2T7-2|RANBP17	nc|ENSG00000204764|Q9H2T7-2|RANBP17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.73211669921875	2	463.732532	925.45051	-0.14268	-6.6165E-05	-1.0251	-0.00047535	-1.1677	-0.00054152	463.7320539806584	26.837	0.21707	26.837	26.727	26.944	0					10	4	3	0	0	0	0.37378	1	9640	9640		73.975	5.1879	1	372040			43759	7723	29060	29177	44323	44323					-0.015196823788983238
TSFRKRET	8	Unmodified	_TSFRKRET_					0	0	0		ENST00000591091.1_1_19:36238326-36242943:-|nuORF	ENST00000591091.1_1_19:36238326-36242943:-|nuORF	ENST00000591091.1_1_19:36238326-36242943:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.18902587890625	3	342.189324	1023.54614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.155	1	18.155	17.655	18.655	0								0	0	0	1.7419	1	4682	4682		24.203	4.206	1				43760	10961	29061	29178	44324	44324					0.03531090531987502
TSFSEALLK	9	Unmodified	_TSFSEALLK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2740783691406	2	498.274032	994.533512	-0.21772	-0.00010848	0.27606	0.00013755	0.058337	2.9068E-05	498.2744218118052	38.27	0.15071	38.27	38.181	38.332	0					10	7	2	0	0	0	0.50858	1	13685	13685		31.53	3.6476	1	73108			43761	4571	29062	29179	44325	44325					0.03602634349101663
TSFSEALLK	9	Unmodified	_TSFSEALLK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2743835449219	2	498.274032	994.533512	0.17473	8.7063E-05	-0.46606	-0.00023222	-0.29133	-0.00014516	498.27395007007686	38.281	0.25147	38.281	38.176	38.428	0					27	12	3	0	0	0	0.026538	1	13681	13681		112.41	35.637	1	214080			43762	4571	29062	29179	44326	44326					0.03602634349101663
TSFSEALLK	9	Unmodified	_TSFSEALLK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2740478515625	2	498.274032	994.533512	-0.72987	-0.00036368	0.46888	0.00023363	-0.26099	-0.00013004	498.27436314218113	38.444	0.44519	38.444	38.267	38.712	0					24	9	4	0	0	0	0.013878	1	15110	15110		132.76	55.984	1	727430			43763	4571	29062	29179	44327	44327					0.03602634349101663
TSFSEALLK	9	Unmodified	_TSFSEALLK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2735900878906	2	498.274032	994.533512	1.0289	0.00051269	-1.9189	-0.00095612	-0.88992	-0.00044343	498.27324347771764	38.439	0.49497	38.439	38.251	38.746	0					31	10	4	0	0	0	0.00324	1	15102	15102		167.23	79.474	1	2072000			43764	4571	29062	29179	44328	44328					0.03602634349101663
TSGAISITQ	9	Unmodified	_TSGAISITQ_					0	0	0		nc|ENSG00000148600|Q96JP9-2|CDHR1;ENSG00000148600|ENST00000623527|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2351989746094	2	439.234907	876.455261	0.32831	0.00014421	-0.13345	-5.8617E-05	0.19486	8.5589E-05	439.23480986421947	14.921	0.20928	14.921	14.855	15.065	0					14	9	2	0	0	0	0.12239	1	3240	3240		74.255	4.6274	1	223240			43765	4842	29063	29180	44329	44329					0.012092017638565267
TSGEPATPK	9	Unmodified	_TSGEPATPK_					0	0	0		nc|ENSG00000224287|P0C860|MSL3B	nc|ENSG00000224287|P0C860|MSL3B	nc|ENSG00000224287|P0C860|MSL3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.2274475097656	2	444.227082	886.439611	-0.21824	-9.6946E-05	-0.3899	-0.0001732	-0.60813	-0.00027015	444.2269206813431	16.632	0.85565	16.632	15.93	16.785	0					33	17	3	0	0	0	0.16806	1	4567	4567		65.465	3.358	1	350180			43766	11771	29064	29181	44330	44330					-0.008150847531965155
TSGGGLHAL	9	Unmodified	_TSGGGLHAL_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.71612548828125	2	406.716685	811.418816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.101	1	24.101	23.601	24.601	0								0	0	0	0.19085	1	8393	8393		52.299	6.3472	1		+		43767	15931	29065	29182	44331	44331					0.005563696577951305
TSGGGSIHVI	10	Unmodified	_TSGGGSIHVI_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;NR2C2|p.F563Lfs*10|1|0.4|ENSG00000177463|chr3:15042899-15042899|T/-|frameshift_variant;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.24737548828125	2	464.248349	926.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.246	1	16.246	15.746	16.746	0								0	0	0	0.40862	1	3812	3812		27.882	2.3082	1				43768	6667	29066	29183	44332	44332					0.01596310375032317
TSGGPERSRK	10	Unmodified	_TSGGPERSRK_					0	0	0		ZC3H4|p.V998Rfs*47|1|0.27|ENSG00000130749|chr19:47067276-47067277|-/G|frameshift_variant;ZC3H4|p.V998Cfs*146|1|0.21|ENSG00000130749|chr19:47067277-47067277|G/-|frameshift_variant;ZC3H4|p.G1158Afs*102|1|0.26|ENSG00000130749|chr19:47066795-47066795|C/-|frameshift_variant;ENSG00000130749|ENST00000253048|ZC3H4	ZC3H4|p.V998Rfs*47|1|0.27|ENSG00000130749|chr19:47067276-47067277|-/G|frameshift_variant	ZC3H4|p.V998Rfs*47|1|0.27|ENSG00000130749|chr19:47067276-47067277|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7886352539062	2	537.786161	1073.55777	3.3503	0.0018017	0.51354	0.00027617	3.8638	0.0020779	537.7863877794538	20.346	1.2174	20.346	19.859	21.076	0					74	24	5	0	0	0	0.3337	1	6324	6324		63.534	3.6031	1	13592000			43769	3667	29067	29184	44333	44333					0.023932875553327904
TSGIALNYWK	10	Unmodified	_TSGIALNYWK_					0	0	0			REV__ENSG00000106927|ENST00000265132|AMBP	REV__ENSG00000106927|ENST00000265132|AMBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.804443359375	2	576.806031	1151.59751	-1.5959	-0.00092054	-1.4887	-0.00085867	-3.0846	-0.0017792	576.8050848883786	18.936	0.27414	18.936	18.747	19.021	0					15	6	3	0	0	0	0.35046	1	5025	5025		49.442	49.442	1	178040	+		43770	13840	29068	29185	44334	44334					0.02777414506022069
TSGIPHPAI	9	Unmodified	_TSGIPHPAI_					0	0	0		TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant;TCF7L1|p.S323Afs*2|1|0.15|ENSG00000152284|chr2:85305375-85305375|C/-|frameshift_variant;ENSG00000152284|ENST00000282111|TCF7L1	TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant	TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.74847412109375	2	446.747985	891.481417	0.60579	0.00027063	-1.2714	-0.000568	-0.66563	-0.00029737	446.747472935224	39.214	0.34304	39.214	39.035	39.378	0					21	12	2	0	0	0	0.39123	1	14896	14896		42.474	1.9018	1	92618			43771	5008	29069	29186	44335	44335					0.031335157259945845
TSGITFHIL	9	Unmodified	_TSGITFHIL_					0	0	0		ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7769775390625	2	494.776742	987.538931	0.68444	0.00033865	0.050147	2.4811E-05	0.73459	0.00036346	494.7767603179626	46.467	0.286	46.467	46.384	46.67	0					31	16	3	0	0	0	0.30268	1	17848	17848		50.025	0	1	229000			43772	10067	29070	29187	44336	44336					0.0446635793156247
TSGKPKQR	8	Unmodified	_TSGKPKQR_					0	0	0		ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.26446533203125	2	451.264333	900.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.597	1	10.597	10.097	11.097	0								0	0	0	1.7419	1	2045	2045		53.351	1.0523	1				43773	8653	29071	29188	44337	44337					0.059877228488517176
TSGLASTQI	9	Unmodified	_TSGLASTQI_					0	0	0		ENST00000595753.5_1_19:16663592-16663826:-|nuORF	ENST00000595753.5_1_19:16663592-16663826:-|nuORF	ENST00000595753.5_1_19:16663592-16663826:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.23468017578125	2	439.234907	876.455261	-0.59027	-0.00025927	0.36074	0.00015845	-0.22953	-0.00010082	439.23502478289123	14.913	0.20586	14.913	14.848	15.054	0					17	9	3	0	0	0	0.16002	1	3244	3244		66.429	0	1	167280			43774	11001	29072	29189	44338	44338					0.01209201763879264
TSGLKEVV	8	Unmodified	_TSGLKEVV_					0	0	0		ENST00000487064.1_1_19:33832314-33832719:+|nuORF	ENST00000487064.1_1_19:33832314-33832719:+|nuORF	ENST00000487064.1_1_19:33832314-33832719:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.7420959472656	2	416.742368	831.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.607	1	27.607	27.107	28.107	0								0	0	0	1.7419	1	10021	10021		30.504	2.2494	1				43775	10032	29073	29190	44339	44339					0.047706936318604676
TSGPTTPLK	9	Unmodified	_TSGPTTPLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2529296875	2	451.2531	900.491647	0.70242	0.00031697	-2.5029	-0.0011294	-1.8005	-0.00081247	451.25254399679073	21.475	0.7111	21.475	20.964	21.675	0					28	14	3	0	0	0	0.0406	1	7138	7138		98.629	5.4339	1	730180			43776	7237	29074	29191	44340	44340					0.037420786605594
TSGPTTPLK	9	Unmodified	_TSGPTTPLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2528381347656	2	451.2531	900.491647	-0.13507	-6.0949E-05	-0.13142	-5.9304E-05	-0.26649	-0.00012025	451.2529601074599	21.363	0.25288	21.363	21.246	21.499	0					9	5	2	0	0	0	0.15163	1	6185	6185		67.494	5.3863	1	118610			43777	7237	29074	29191	44341	44341					0.037420786605594
TSGPTTPLK	9	Unmodified	_TSGPTTPLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2528991699219	2	451.2531	900.491647	-0.40639	-0.00018338	-0.28779	-0.00012987	-0.69418	-0.00031325	451.25297939442515	21.497	0.46302	21.497	21.19	21.653	0					18	9	3	0	0	0	0.048471	1	6996	6996		95.815	5.4453	1	649490			43778	7237	29074	29191	44342	44342					0.037420786605594
TSGPTTPLK	9	Unmodified	_TSGPTTPLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2528991699219	2	451.2531	900.491647	0.87638	0.00039547	-1.9979	-0.00090157	-1.1215	-0.0005061	451.25243112262774	21.515	0.61238	21.515	21.126	21.738	0					23	12	3	0	0	0	0.056004	1	7012	7012		93.143	5.4468	1	1036400			43779	7237	29074	29191	44343	44343					0.037420786605594
TSGPVTTSK	9	Unmodified	_TSGPVTTSK_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2347717285156	2	439.234907	876.455261	0.26918	0.00011823	-0.74094	-0.00032545	-0.47176	-0.00020722	439.2346424140275	14.87	0.16071	14.87	14.803	14.964	0					12	7	2	0	0	0	0.078509	1	3128	3128		85.161	0.2453	1	160810			43780	11216	29075	29192	44344	44344					0.012092017638678954
TSGPVTTSK	9	Unmodified	_TSGPVTTSK_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.23468017578125	2	439.234907	876.455261	-0.36732	-0.00016134	0.27399	0.00012035	-0.093335	-4.0996E-05	439.2349769992677	15.156	0.26081	15.156	15.045	15.306	0					15	5	4	0	0	0	0.013878	1	4072	4072		132.76	42.388	1	3597700			43781	11216	29075	29192	44345	44345					0.012092017638678954
TSGPVTTSK	9	Unmodified	_TSGPVTTSK_					0	0	0		HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.2347717285156	2	439.234907	876.455261	-0.56769	-0.00024935	0.095951	4.2145E-05	-0.47174	-0.00020721	439.23495589193453	15.122	0.36895	15.122	14.961	15.33	0					18	7	4	0	0	0	0.023928	1	3902	3902		115.49	33.254	1	3846800			43782	11216	29075	29192	44346	44346					0.012092017638678954
TSGRGYLK	8	Unmodified	_TSGRGYLK_					0	0	0			REV__ENST00000585263.1_1_18:72176049-72176178:+|nuORF	REV__ENST00000585263.1_1_18:72176049-72176178:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.24578857421875	2	441.245609	880.476666	-2.9771	-0.0013136	4.035	0.0017804	1.0579	0.0004668	441.24682206202687	13.831	0.061295	13.831	13.792	13.853	0					5	3	2	0	0	0	0.54629	1	2833	2833		55.504	0	1	55703	+		43783	14705	29076	29193	44347	44347					0.031646315832290384
TSGTPTPLK	9	Unmodified	_TSGTPTPLK_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2532043457031	2	451.2531	900.491647	-1.1897	-0.00053684	0.17205	7.764E-05	-1.0176	-0.0004592	451.2533136101002	21.295	0.2356	21.295	21.193	21.428	0					12	7	2	0	0	0	0.12239	1	6078	6078		74.255	0	1	145660	+		43784	12991	29077	29194	44348	44348					0.037420786605594
TSGVHTFPAVL	11	Unmodified	_TSGVHTFPAVL_					0	0	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211892|P01861-1|IGHG4	nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211892|P01861|IGHG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8047485351562	2	564.806031	1127.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.718	1	31.718	31.218	32.218	0								0	0	0	0.39691	1	11988	11988		37.812	3.639	1				43785	11750;11748	29078	29195	44349	44349					0.038814145060541705
TSGVLVVLTK	10	Unmodified	_TSGVLVVLTK_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4;CNNM4|p.L438Pfs*9|1|0.32|ENSG00000158158|chr2:96762305-96762306|-/C|frameshift_variant	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.8228454589844	2	508.82115	1015.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.829	1	38.829	38.329	39.329	0								0	0	0	0.28607	1	15298	15298		53.089	16.642	1				43786	5247	29079	29196	44350	44350					0.12055773171232431
TSGVTFRSPL	10	Unmodified	_TSGVTFRSPL_					0	0	0		ENSG00000139405|ENST00000548278|RITA1;nc|ENSG00000139405|Q96K30-3|RITA1	ENSG00000139405|ENST00000548278|RITA1	ENSG00000139405|ENST00000548278|RITA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7916870117188	2	532.790381	1063.56621	0.1287	6.857E-05	0.94002	0.00050083	1.0687	0.0005694	532.79070533382	41.723	0.10259	41.723	41.653	41.755	0					9	5	2	0	0	0	0.536	1	15840	15840		41.427	2.1738	1	60703			43787	4326	29080	29197	44351	44351					0.036968414719467546
TSHLYTDGSHT	11	Unmodified	_TSHLYTDGSHT_					0	0	0		ENAM|p.P908H|1|0.23|ENSG00000132464|chr4:70644149-70644149|C/A|missense_variant	ENAM|p.P908H|1|0.23|ENSG00000132464|chr4:70644149-70644149|C/A|missense_variant	ENAM|p.P908H|1|0.23|ENSG00000132464|chr4:70644149-70644149|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.85009765625	3	406.851036	1217.53128	-0.56095	-0.00022822	-2.4623	-0.0010018	-3.0232	-0.00123	406.85020983788456	19.055	0.44995	19.055	18.811	19.26	0					19	9	3	0	0	0	0.64562	1	5806	5806		22.562	0	1	1877000			43788	914	29081	29198	44352	44352					-0.06878446126688686
TSHQPLLPAPP	11	Unmodified	_TSHQPLLPAPP_					0	0	0		ENSG00000183060|ENST00000684762|LYSMD4;nc|ENSG00000183060|Q5XG99-2|LYSMD4	ENSG00000183060|ENST00000684762|LYSMD4	ENSG00000183060|ENST00000684762|LYSMD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.54864501953125	3	386.548629	1156.62406	0.13244	5.1193E-05	-0.15732	-6.0814E-05	-0.024889	-9.621E-06	386.54860079886794	24.243	1.0608	24.243	24.045	25.106	0					44	21	4	0	0	0	0.61618	1	8480	8480		45.022	13.388	1	2827500			43789	6939	29082	29199	44353	44353					0.05201103397348561
TSIEIKKK	8	Unmodified	_TSIEIKKK_					0	0	0			REV__nc|ENSG00000133119|P40938-2|RFC3	REV__nc|ENSG00000133119|P40938-2|RFC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.8001403808594	2	473.800217	945.585882	-0.63088	-0.00029891	0.22995	0.00010895	-0.40093	-0.00018996	473.80046927080986	20.596	0.082779	20.596	20.543	20.626	0					4	2	2	0	0	0	0.78142	1	5779	5779		23.042	1.0826	1	50627	+		43790	14697	29083	29200	44354	44354					0.1109121748271491
TSIEVELGIN	10	Unmodified	_TSIEVELGIN_					0	0	0			REV__CCDC62|p.S16L|1|0.21|ENSG00000130783|chr12:122777501-122777501|C/T|missense_variant	REV__CCDC62|p.S16L|1|0.21|ENSG00000130783|chr12:122777501-122777501|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7886962890625	2	537.787504	1073.56045	1.8931	0.0010181	-0.39475	-0.00021229	1.4984	0.00080581	537.7872005196573	20.322	0.97096	20.322	19.859	20.83	0					66	19	5	0	0	0	0.095632	1	6483	6483		96.19	5.8206	1	14080000	+		43791	12366	29084	29201	44355	44355					0.026616981696406583
TSIIDAETTG	10	Unmodified	_TSIIDAETTG_					0	0	0			REV__nc|ENSG00000156475|Q00005-3|PPP2R2B	REV__nc|ENSG00000156475|Q00005-3|PPP2R2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.24627685546875	2	504.248212	1006.48187	-0.061483	-3.1002E-05	-4.41	-0.0022237	-4.4715	-0.0022547	504.2459620497708	20.987	0.083326	20.987	20.945	21.028	0					4	2	2	0	0	0	0.42631	1	5716	5716		53.351	1.0523	1	90595	+		43792	21075	29085	29202	44356	44356					-0.02111154135468496
TSIITWSAG	9	Unmodified	_TSIITWSAG_					0	0	0			REV__ENST00000514380.5_1_4:26322378-26431729:+|nuORF	REV__ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.2470397949219	2	468.245275	934.475997	3.9784	0.0018629	-0.85165	-0.00039878	3.1267	0.0014641	468.2450382306127	24.193	0.17625	24.193	24.096	24.273	0					7	5	2	0	0	0	0.51817	1	7366	7366		30.504	2.6214	1	57325	+		43793	16246	29086	29203	44357	44357					0.006137921435197313
TSIQPGAPK	9	Unmodified	_TSIQPGAPK_					0	0	0		PAK4|p.Q189Sfs*180|4|0.41|ENSG00000130669|chr19:39173273-39173273|C/-|frameshift_variant;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4	PAK4|p.Q189Sfs*180|4|0.41|ENSG00000130669|chr19:39173273-39173273|C/-|frameshift_variant	PAK4|p.Q189Sfs*180|4|0.41|ENSG00000130669|chr19:39173273-39173273|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.75311279296875	2	449.753267	897.491981	0.62779	0.00028235	-0.89597	-0.00040296	-0.26818	-0.00012061	449.7528179004832	19.98	0.25644	19.98	19.869	20.125	0					9	5	3	0	0	0	0.22837	1	6136	6136		58.23	8.6939	1	430810			43794	3657	29087	29204	44358	44358					0.03913498380427427
TSIQPGAPK	9	Unmodified	_TSIQPGAPK_					0	0	0		PAK4|p.Q189Sfs*180|4|0.41|ENSG00000130669|chr19:39173273-39173273|C/-|frameshift_variant;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4	PAK4|p.Q189Sfs*180|4|0.41|ENSG00000130669|chr19:39173273-39173273|C/-|frameshift_variant	PAK4|p.Q189Sfs*180|4|0.41|ENSG00000130669|chr19:39173273-39173273|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.7532653808594	2	449.753267	897.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.734	1	19.734	19.234	20.234	0								0	0	0	0.18645	1	5417	5417		52.937	1.744	1				43795	3657	29087	29204	44359	44359					0.03913498380427427
TSIQSVMAK	9	Unmodified	_TSIQSVMAK_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.76025390625	2	482.760235	963.505917	-0.12853	-6.205E-05	-0.46576	-0.00022485	-0.59429	-0.0002869	482.7599898545749	17.52	0.32663	17.52	17.331	17.658	0					21	8	4	0	0	0	0.18416	1	4956	4956		63.534	2.5619	1	463300	+		43796	15666	29088	29205	44360	44360					0.022704078172182562
TSITRNSKNQ	10	Unmodified	_TSITRNSKNQ_					0	0	0		ENSG00000163689|ENST00000482387|CFAP20DC;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENST00000468415.6_1_3:58855212-58899448:-|nuORF	ENSG00000163689|ENST00000482387|CFAP20DC	ENSG00000163689|ENST00000482387|CFAP20DC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.8048095703125	2	574.804551	1147.59455	-1.5248	-0.00087647	-0.37361	-0.00021475	-1.8984	-0.0010912	574.8042385582168	39.563	0.31435	39.563	39.467	39.781	0					41	16	4	0	0	0	0.46128	1	14079	14079		49.536	1.8787	1	665530			43797	5594	29089	29206	44361	44361					0.02665539381223425
TSIYKTPNP	9	Unmodified	_TSIYKTPNP_					0	0	0		ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7726135253906	2	510.771657	1019.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.038	1	40.038	39.538	40.538	0								0	0	0	0.13137	1	15257	15257		64.207	7.4862	1				43798	3948	29090	29207	44362	44362					0.019777502063334396
TSKIEKGNK	9	Unmodified	_TSKIEKGNK_					0	0	0			REV__tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	REV__tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	335.52947998046875	3	335.529346	1003.56621	-0.70264	-0.00023576	0.10966	3.6795E-05	-0.59298	-0.00019896	335.5295025981708	24.116	0.11139	24.116	24.007	24.119	0					5	3	2	0	0	0	0.5879	1	7328	7328		17.468	0	1	113980	+		43799	21694	29091	29208	44363	44363					0.06456841471947428
TSKKMKKMR	9	Unmodified	_TSKKMKKMR_					0	0	0			REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.89263916015625	3	379.891344	1136.6522	3.5281	0.0013403	-0.18952	-7.1997E-05	3.3386	0.0012683	379.89116351574154	18.506	0.065996	18.506	18.448	18.514	0					4	2	2	0	0	0	0.35021	1	4841	4841		45.972	5.1941	1	190320	+		43800	21913	29092	29209	44364	44364					0.08934386781470494
TSKLKNDAK	9	Unmodified	_TSKLKNDAK_					0	0	0			REV__tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	REV__tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	335.529296875	3	335.529346	1003.56621	0.53617	0.0001799	-0.76683	-0.00025729	-0.23066	-7.7393E-05	335.5291501861598	24.335	0.16331	24.335	24.23	24.393	0					8	3	3	0	0	0	0.61124	1	8493	8493		11.097	11.097	1	429070	+		43801	21773	29093	29210	44365	44365					0.06456841471936059
TSKLLKNNP	9	Unmodified	_TSKLLKNNP_					0	0	0		tr|U7SRU9|U7SRU9_FUSNUCobaltABCtransporter,permeaseCbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01438PE=4SV=1	tr|U7SRU9|U7SRU9_FUSNUCobaltABCtransporter,permeaseCbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01438PE=4SV=1	tr|U7SRU9|U7SRU9_FUSNUCobaltABCtransporter,permeaseCbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01438PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.2041015625	3	338.869591	1013.58694	0.22896	7.7587E-05	-0.19299	-6.5397E-05	0.035972	1.219E-05	338.869335570194	15.067	0.065003	15.067	15.005	15.07	0					5	3	2	0	0	0	0.61124	1	3204	3204		25.574	25.574	1	65281			43802	22728	29094	29211	44366	44366					0.08069431851606623
TSKLSHKFK	9	Unmodified	_TSKLSHKFK_					0	0	0		nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.T716Nfs*11|1|0.27|ENSG00000158528|chr7:95250065-95250066|-/A|frameshift_variant;nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.2120056152344	3	359.213469	1074.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.136	1	12.136	11.636	12.636	0								0	0	0	0.28666	1	2513	2513		37.812	3.8899	1				43803	5268	29095	29212	44367	44367					0.0842542460554796
TSKQAKKRE	9	Unmodified	_TSKQAKKRE_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.2118835449219	3	359.212128	1074.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.17	1	12.17	11.67	12.67	0								0	0	0	0.29774	1	2506	2506		51.193	3.2332	1		+		43804	15511	29096	29213	44368	44368					0.0802333511182951
TSLAETGLK	9	Unmodified	_TSLAETGLK_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.25726318359375	2	460.258382	918.502212	0.13659	6.2866E-05	-3.1321	-0.0014416	-2.9955	-0.0013787	460.25686703238404	31.061	0.14016	31.061	31.017	31.157	0					5	3	2	0	0	0	0.3269	1	11278	11278		47.96	3.5823	1	446660	+		43805	12092	29097	29214	44369	44369					0.039700613149989294
TSLAFPLCQ	9	Unmodified	_TSLAFPLCQ_					0	0	0		nc|ENSG00000131037|Q8TE68-3|EPS8L1	nc|ENSG00000131037|Q8TE68-3|EPS8L1	nc|ENSG00000131037|Q8TE68-3|EPS8L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.25054931640625	2	490.249503	978.484453	1.3315	0.00065278	0.7752	0.00038004	2.1067	0.0010328	490.2499837759042	24.791	0.15787	24.791	24.693	24.851	0					9	4	3	0	0	0	0.25109	1	7372	7372		55.504	2.1528	1	159670			43806	11522	29098	29215	44370	44370					-0.00564977211513451
TSLAGRRMLWA	11	Unmodified	_TSLAGRRMLWA_					0	0	0		ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.2333984375	3	421.232647	1260.67611	-0.11814	-4.9763E-05	1.8199	0.00076658	1.7017	0.00071682	421.2333931866363	22.719	0.11632	22.719	22.66	22.777	0					4	2	2	0	0	0	0.67178	1	7742	7742		33.039	4.9579	1	267940			43807	9143	29099	29216	44371	44371					0.0561994353947739
TSLARPAGPT	10	Unmodified	_TSLARPAGPT_					0	0	0			REV__ENSG00000141096|ENST00000268793|DPEP3	REV__ENSG00000141096|ENST00000268793|DPEP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7694396972656	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.023	1	34.023	33.523	34.523	0								0	0	0	0.30854	1	12996	12996		49.536	0.094497	1		+		43808	15102	29100	29217	44372	44372					0.03836285783427229
TSLARQPKK	9	Unmodified	_TSLARQPKK_					0	0	0			REV__MAGEB3|p.S144Afs*25|2|0.13|ENSG00000198798|chrX:30236349-30236349|A/-|frameshift_variant	REV__MAGEB3|p.S144Afs*25|2|0.13|ENSG00000198798|chrX:30236349-30236349|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.816650390625	2	514.81419	1027.61383	0.74268	0.00038234	-0.96894	-0.00049882	-0.22626	-0.00011648	514.8137774186528	13.305	1.2805	13.305	13.112	14.393	0					49	27	5	0	0	0	0.47038	1	3218	3218		35.618	3.6634	1	35394000	+		43809	17432	29101	29218	44373	44373					0.1011254046279646
TSLASVLKI	9	Unmodified	_TSLASVLKI_					0	0	0		ENST00000470296.5_1_3:48964979-48999061:+|nuORF	ENST00000470296.5_1_3:48964979-48999061:+|nuORF	ENST00000470296.5_1_3:48964979-48999061:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2948913574219	2	466.294768	930.574983	-0.13507	-6.2982E-05	0.52157	0.0002432	0.3865	0.00018022	466.29504593065354	35.583	0.15928	35.583	35.503	35.662	0					6	4	2	0	0	0	0.21263	1	13810	13810		60.118	1.3363	1	69255			43810	9837	29102	29219	44374	44374					0.10691815108407354
TSLCKLHF	8	Unmodified	_TSLCKLHF_					0	0	0		LRP1B|p.N3683T|1|0.06|ENSG00000168702|chr2:140364744-140364744|T/G|missense_variant	LRP1B|p.N3683T|1|0.06|ENSG00000168702|chr2:140364744-140364744|T/G|missense_variant	LRP1B|p.N3683T|1|0.06|ENSG00000168702|chr2:140364744-140364744|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.75341796875	2	474.752213	947.489873	0.29868	0.0001418	1.6979	0.00080609	1.9966	0.00094789	474.7530791348927	17.349	0.4523	17.349	17.058	17.511	0					17	11	2	0	0	0	0.59411	1	4890	4890		50.025	2.065	1	381070			43811	11323	29103	29220	44375	44375					0.0140274637095672
TSLCLMME	8	Oxidation (M)	_TSLCLM(Oxidation (M))ME_		TSLCLM(0.5)M(0.5)E		TSLCLM(0)M(0)E	0	0	1		ENST00000466897.1_1_1:5946982-5948606:-|nuORF	ENST00000466897.1_1_1:5946982-5948606:-|nuORF	ENST00000466897.1_1_1:5946982-5948606:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2021179199219	2	472.200307	942.386061	3.7692	0.0017798	-0.87254	-0.00041201	2.8966	0.0013678	472.2000420276298	17.637	0.1091	17.637	17.536	17.645	0					5	3	2	0	0	0	0.64096	1	4453	4453		42.474	7.2737	2	86422			43812	9792	29104	29221	44376	44376		393;394			-0.0874366484320035
TSLDKFYRK	9	Unmodified	_TSLDKFYRK_					0	0	0		MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant;nc|ENSG00000034152|P46734-2|MAP2K3;ENSG00000034152|ENST00000342679|MAP2K3;nc|ENSG00000034152|P46734-3|MAP2K3	MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant	MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.3197021484375	2	579.319306	1156.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.042	1	24.042	23.542	24.542	0								0	0	0	0.095784	1	7039	7039		72.879	14.649	1				43813	1160	29105	29222	44377	44377					0.05201103397348561
TSLDKFYRK	9	Unmodified	_TSLDKFYRK_					0	0	0		MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant;nc|ENSG00000034152|P46734-2|MAP2K3;ENSG00000034152|ENST00000342679|MAP2K3;nc|ENSG00000034152|P46734-3|MAP2K3	MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant	MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.3194580078125	2	579.319306	1156.62406	-0.047531	-2.7536E-05	0.50391	0.00029192	0.45637	0.00026439	579.3195579208603	24.303	0.3287	24.303	24.161	24.49	0					14	7	3	0	0	0	0.037924	1	8175	8175		101.25	35.787	1	1099000			43814	1160	29105	29222	44378	44378					0.05201103397348561
TSLDKFYRK	9	Unmodified	_TSLDKFYRK_					0	0	0		MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant;nc|ENSG00000034152|P46734-2|MAP2K3;ENSG00000034152|ENST00000342679|MAP2K3;nc|ENSG00000034152|P46734-3|MAP2K3	MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant	MAP2K3|p.Q288Sfs*19|1|0.24|ENSG00000034152|chr17:21312224-21312224|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.54852294921875	3	386.548629	1156.62406	-1.1857	-0.00045833	1.2034	0.00046519	0.01773	6.8535E-06	386.54906271795755	24.058	0.42205	24.058	23.96	24.382	0					22	13	3	0	0	0	0.54267	1	7301	7301		42.864	42.864	1	490060			43815	1160	29105	29222	44379	44379					0.05201103397348561
TSLGMHFR	8	Oxidation (M)	_TSLGM(Oxidation (M))HFR_		TSLGM(1)HFR		TSLGM(110)HFR	0	0	1			REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	REV__DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7380065917969	2	482.737094	963.459635	2.4007	0.0011589	-0.33745	-0.0001629	2.0632	0.000996	482.73694218029317	16.673	0.31296	16.673	16.515	16.828	0					17	6	4	0	0	0	0.2423	1	4673	4673		114.59	37.812	1	6662800	+		43816	12725	29106	29223	44380	44380		490			-0.0235561229421819
TSLGSIEEIQN	11	Unmodified	_TSLGSIEEIQN_					0	0	0			REV__LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant	REV__LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	397.533935546875	3	397.534825	1189.58265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.155	1	21.155	20.655	21.655	0								0	0	0	0.41351	1	5782	5782		34.087	1.0471	1		+		43817	14939	29107	29224	44381	44381					-0.004561221526046211
TSLGSVMAPL	10	Oxidation (M)	_TSLGSVM(Oxidation (M))APL_		TSLGSVM(1)APL		TSLGSVM(48)APL	0	0	1		ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.259521484375	2	496.260068	990.505582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.025	1	42.025	41.525	42.525	0								0	0	0	0.32041	1	16512	16512		47.657	9.8458	1				43818	57	29108	29225	44382	44382		2			0.009949880973636027
TSLGYEVQK	9	Unmodified	_TSLGYEVQK_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-7|CFLAR;nc|ENSG00000003402|O15519-3|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;ENSG00000003402|ENST00000309955|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7698364257812	2	512.769114	1023.52368	1.2206	0.0006259	-0.43129	-0.00022115	0.78934	0.00040475	512.7687652113483	17.962	0.66961	17.962	17.841	18.511	0					56	23	6	0	0	0	0.25716	1	4550	4550		54.776	3.4409	1	23322000			43819	935	29109	29226	44383	44383					0.01285446343717922
TSLGYQVGK	9	Unmodified	_TSLGYQVGK_					0	0	0		ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant;ZNF317|p.L487Pfs*6|1|0.3|ENSG00000130803|chr19:9161101-9161104|TATT/-|frameshift_variant;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENSG00000130803|ENST00000247956|ZNF317	ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant	ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.7583312988281	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.17	1	26.17	25.67	26.67	0								0	0	0	0.1633	1	8195	8195		56.721	6.6965	1				43820	3673	29110	29227	44384	44384					0.024854810348642786
TSLGYQVGK	9	Unmodified	_TSLGYQVGK_					0	0	0		ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant;ZNF317|p.L487Pfs*6|1|0.3|ENSG00000130803|chr19:9161101-9161104|TATT/-|frameshift_variant;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENSG00000130803|ENST00000247956|ZNF317	ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant	ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7581787109375	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.277	1	26.277	25.777	26.777	0								0	0	0	0.072369	1	8437	8437		79.713	22.992	1				43821	3673	29110	29227	44385	44385					0.024854810348642786
TSLIPATMR	9	Oxidation (M)	_TSLIPATM(Oxidation (M))R_		TSLIPATM(1)R		TSLIPATM(41)R	0	0	1		ENST00000463191.1_1_2:46583887-46583935:+|nuORF	ENST00000463191.1_1_2:46583887-46583935:+|nuORF	ENST00000463191.1_1_2:46583887-46583935:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7734680175781	2	503.273509	1004.53247	1.1757	0.00059168	-3.3492	-0.0016856	-2.1735	-0.0010939	503.77321477616937	42.625	0.19991	42.625	42.473	42.673	0					6	5	2	0	0	0	0.40353	1	17037	17037		41.427	6.2746	1	62072			43822	9757	29111	29228	44386	44386		391			0.030380967085420707
TSLIPMTYK	9	Unmodified	_TSLIPMTYK_					0	0	0		HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;nc|ENSG00000157423|Q4G0P3-6|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.288818359375	2	527.286085	1052.55762	5.2557	0.0027713	0.087823	4.6308E-05	5.3435	0.0028176	527.2860290326188	16.253	0.11942	16.253	16.196	16.315	0					10	4	3	0	0	0	0.30951	1	3856	3856		49.442	1.5259	1	155000			43823	5216	29112	29229	44387	44387					0.0334415151110079
TSLIPMTYK	9	Unmodified	_TSLIPMTYK_					0	0	0		HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;nc|ENSG00000157423|Q4G0P3-6|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2877807617188	2	527.286085	1052.55762	1.6284	0.00085863	1.5234	0.00080326	3.1518	0.0016619	527.2867826131272	16.491	0.21604	16.491	16.384	16.6	0					10	4	3	0	0	0	0.22377	1	4586	4586		58.782	18.209	1	2326800			43824	5216	29112	29229	44388	44388					0.0334415151110079
TSLKFFLNK	9	Unmodified	_TSLKFFLNK_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.3214111328125	2	549.321317	1096.62808	1.8406	0.0010111	-1.3318	-0.00073158	0.50882	0.00027951	549.3205788725761	37.519	0.29236	37.519	37.423	37.716	0					17	8	3	0	0	0	0.046074	1	14242	14242		80.455	18.347	1	224200			43825	5675	29113	29230	44389	44389					0.0836319289110179
TSLKFFLNK	9	Unmodified	_TSLKFFLNK_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.5501403808594	3	366.54997	1096.62808	1.1779	0.00043174	-0.76103	-0.00027896	0.41682	0.00015279	366.549495317529	37.472	0.43214	37.472	37.387	37.819	0					36	13	4	0	0	0	0.44593	1	14644	14644		37.812	1.3648	1	831760			43826	5675	29113	29230	44390	44390					0.0836319289110179
TSLKFFLNK	9	Unmodified	_TSLKFFLNK_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.32177734375	2	549.321317	1096.62808	0.51598	0.00028344	0.27577	0.00015149	0.79175	0.00043493	549.3214574395315	37.425	0.16934	37.425	37.315	37.484	0					6	3	2	0	0	0	0.22823	1	14641	14641		42.864	8.6917	1	155590			43827	5675	29113	29230	44391	44391					0.0836319289110179
TSLKSIMKK	9	Unmodified	_TSLKSIMKK_					0	0	0		nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.3152465820312	2	518.315177	1034.6158	0.46938	0.00024329	-0.37509	-0.00019441	0.094288	4.8871E-05	518.315010011056	19.86	0.17797	19.86	19.792	19.97	0					11	5	3	0	0	0	0.18505	1	5221	5221		65.465	0	1	691030			43828	3821	29114	29231	44392	44392					0.09987833156401393
TSLKSIMKK	9	Unmodified	_TSLKSIMKK_					0	0	0		nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.3151245117188	2	518.315177	1034.6158	0.053036	2.7489E-05	-0.16469	-8.5363E-05	-0.11166	-5.7874E-05	518.3152080687619	20.188	0.29183	20.188	20.095	20.387	0					18	6	4	0	0	0	0.052435	1	6229	6229		88.177	0	1	3155000			43829	3821	29114	29231	44393	44393					0.09987833156401393
TSLKSIMKK	9	Unmodified	_TSLKSIMKK_					0	0	0		nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.3155517578125	2	518.315177	1034.6158	0.11551	5.9869E-05	0.36202	0.00018764	0.47752	0.00024751	518.3154759881362	19.911	0.32047	19.911	19.808	20.128	0					23	10	4	0	0	0	0.0063888	1	5464	5464		136.27	0	1	1750900			43830	3821	29114	29231	44394	44394					0.09987833156401393
TSLKSIMKK	9	Unmodified	_TSLKSIMKK_					0	0	0		nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.3154296875	2	518.315177	1034.6158	0.94987	0.00049233	-0.78933	-0.00040912	0.16054	8.3212E-05	518.3148972734277	19.972	0.27264	19.972	19.827	20.1	0					15	6	4	0	0	0	0.024312	1	5516	5516		109.48	0	1	1230100			43831	3821	29114	29231	44395	44395					0.09987833156401393
TSLKSIMKK	9	Unmodified	_TSLKSIMKK_					0	0	0		nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.3153076171875	2	518.315177	1034.6158	-1.4082	-0.00072992	1.7711	0.00091797	0.36281	0.00018805	518.316133448722	19.957	0.31341	19.957	19.86	20.173	0					13	7	3	0	0	0	0.034688	1	5508	5508		109.48	0	1	1448600			43832	3821	29114	29231	44396	44396					0.09987833156401393
TSLKSIMKK	9	Unmodified	_TSLKSIMKK_					0	0	0		nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.3151245117188	2	518.315177	1034.6158	1.5804	0.00081915	-1.9147	-0.0009924	-0.33426	-0.00017325	518.3142965711055	20.135	0.56688	20.135	19.978	20.544	0					28	11	5	0	0	0	0.0079272	1	6330	6330		141.52	0	1	11285000			43833	3821	29114	29231	44397	44397					0.09987833156401393
TSLLFCFDESG	11	Unmodified	_TSLLFCFDESG_					0	0	0			REV__nc|ENSG00000173575|O14647-2|CHD2;REV__nc|ENSG00000153922|O14646-2|CHD1	REV__nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.84991455078125	3	406.849757	1217.52744	0.97921	0.00039839	-1.1857	-0.00048242	-0.20654	-8.4033E-05	406.84945578768225	19.129	0.44859	19.129	18.924	19.373	0					27	10	4	0	0	0	0.65907	1	5693	5693		34.087	3.5176	1	1955700	+		43834	16518;15552	29115	29232	44398	44398					-0.07262251944757736
TSLLFLTAG	9	Unmodified	_TSLLFLTAG_					0	0	0		ENST00000457668.1_1_2:60578942-60579098:-|nuORF	ENST00000457668.1_1_2:60578942-60579098:-|nuORF	ENST00000457668.1_1_2:60578942-60579098:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.7637939453125	2	461.765843	921.517133	-2.4847	-0.0011473	-1.7483	-0.0008073	-4.233	-0.0019546	461.7649047807964	13.801	0.11239	13.801	13.741	13.853	0					13	6	3	0	0	0	0.23186	1	2818	2818		57.811	0	1	249750			43835	9698	29116	29233	44399	44399					0.05323553182984142
TSLLPDRK	8	Unmodified	_TSLLPDRK_					0	0	0		ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.2744445800781	2	465.274367	928.53418	-0.16932	-7.8781E-05	-0.92132	-0.00042867	-1.0906	-0.00050745	465.2743297022068	16.089	0.16727	16.089	15.977	16.144	0					10	5	3	0	0	0	0.49216	1	3731	3731		60.972	0	1	94899			43836	7620	29117	29234	44400	44400					0.06705473788792915
TSLLTAVV	8	Unmodified	_TSLLTAVV_					0	0	0			REV__nc|ENSG00000179676|Q7Z4B0|LINC00305	REV__nc|ENSG00000179676|Q7Z4B0|LINC00305	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2470397949219	2	402.247286	802.48002	-0.59675	-0.00024004	0.24508	9.8581E-05	-0.35167	-0.00014146	402.2473583344162	40.316	0.1955	40.316	40.229	40.424	0					6	4	2	0	0	0	0.36926	1	16008	16008		74.517	3.1387	1	102370	+		43837	21142	29118	29235	44401	44401					0.0708788163723284
TSLNEVFLN	9	Unmodified	_TSLNEVFLN_					0	0	0		ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant;nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10	ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant	ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7715454101562	2	518.769114	1035.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.996	1	24.996	24.496	25.496	0								0	0	0	0.2591	1	7882	7882		42.396	3.59	1				43838	3	29119	29236	44402	44402					0.007334463437246086
TSLNSSQI	8	Unmodified	_TSLNSSQI_					0	0	0		ENTHD1|p.M583T|1|0.06|ENSG00000176177|chr22:39743755-39743755|A/G|missense_variant	ENTHD1|p.M583T|1|0.06|ENSG00000176177|chr22:39743755-39743755|A/G|missense_variant	ENTHD1|p.M583T|1|0.06|ENSG00000176177|chr22:39743755-39743755|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.21990966796875	2	425.219257	848.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.758	1	12.758	12.258	13.258	0								0	0	0	1.7419	1	2949	2949		49.442	1.7842	1				43839	11105	29120	29237	44403	44403					-0.006313712702194607
TSLPLFCIL	9	Unmodified	_TSLPLFCIL_					0	0	0			REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7874755859375	2	503.785721	1005.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.118	1	18.118	17.618	18.618	0								0	0	0	0.24438	1	4462	4462		44.531	9.3304	1		+		43840	20440	29121	29238	44404	44404					0.0543335686206774
TSLPLFCIL	9	Unmodified	_TSLPLFCIL_					0	0	0			REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.78741455078125	2	503.785721	1005.55689	-0.06006	-3.0257E-05	3.4951	0.0017608	3.4351	0.0017305	503.787457863697	18.036	2.5231	18.036	17.448	19.971	0					144	60	4	0	0	0	0.27781	1	5442	5442		52.299	6.3472	1	965660	+		43841	20440	29121	29238	44405	44405					0.0543335686206774
TSLPLFCIL	9	Unmodified	_TSLPLFCIL_					0	0	0			REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.78753662109375	2	503.785721	1005.55689	2.9307	0.0014764	0.71694	0.00036119	3.6476	0.0018376	503.7861895008325	17.554	3.5803	17.554	17.396	20.976	0					143	72	5	0	0	0	0.25726	2	5121	5121;5658		54.765	4.7401	1	2758700	+		43842	20440	29121	29238	44406;44407	44406					0.0543335686206774
TSLPLFCIL	9	Unmodified	_TSLPLFCIL_					0	0	0			REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	REV__ENST00000578804.5_2_17:62499940-62500153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7876281738281	2	503.785721	1005.55689	2.9292	0.0014757	1.4403	0.00072561	4.3695	0.0022013	503.7859619344003	22.999	1.6624	22.999	21.555	23.218	0					55	33	2	0	0	0	0.36711	1	7441	7441		44.531	5.5096	1	1288600	+		43843	20440	29121	29238	44408	44408					0.0543335686206774
TSLPSAICK	9	Unmodified	_TSLPSAICK_					0	0	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.24920654296875	2	460.249503	918.484453	0.70917	0.0003264	-1.0212	-0.00047001	-0.31202	-0.00014361	460.24904761914087	30.621	0.25235	30.621	30.485	30.738	0					16	10	2	0	0	0	0.44593	1	9758	9758		37.812	2.1932	1	109240			43844	6686	29122	29239	44409	44409					0.021950227884985907
TSLPSAICK	9	Unmodified	_TSLPSAICK_					0	0	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.24932861328125	2	460.249503	918.484453	0.13641	6.2783E-05	-0.46787	-0.00021534	-0.33146	-0.00015255	460.24928321823177	30.95	0.22812	30.95	30.754	30.982	0					10	5	2	0	0	0	0.087861	1	11160	11160		82.241	36.289	1	732400			43845	6686	29122	29239	44410	44410					0.021950227884985907
TSLPSAICK	9	Unmodified	_TSLPSAICK_					0	0	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2492370605469	2	460.249503	918.484453	-0.15295	-7.0394E-05	0.1217	5.6012E-05	-0.031249	-1.4382E-05	460.24927908170446	30.889	0.22385	30.889	30.742	30.965	0					15	5	3	0	0	0	0.098791	1	11555	11555		79.713	13.909	1	1514200			43846	6686	29122	29239	44411	44411					0.021950227884985907
TSLPSAICK	9	Unmodified	_TSLPSAICK_					0	0	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2493591308594	2	460.249503	918.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.815	1	30.815	30.315	31.315	0								0	0	0	0.25587	1	11450	11450		42.864	0.38981	1				43847	6686	29122	29239	44412	44412					0.021950227884985907
TSLPSAICK	9	Carbamidomethyl (C)	_TSLPSAIC(Carbamidomethyl (C))K_	TSLPSAIC(1)K		TSLPSAIC(150)K		0	1	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7599182128906	2	488.760235	975.505917	0.76833	0.00037553	-2.0384	-0.00099629	-1.2701	-0.00062076	488.7595978960867	28.449	0.24513	28.449	28.33	28.575	0					19	6	4	0	0	0	0.0071053	1	10045	10045		148.99	44.24	1	3955000			43848	6686	29122	29240	44413	44413	285				0.01718407817213574
TSLPSAICK	9	Carbamidomethyl (C)	_TSLPSAIC(Carbamidomethyl (C))K_	TSLPSAIC(1)K		TSLPSAIC(96)K		0	1	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.75982666015625	2	488.760235	975.505917	-1.2507	-0.00061131	-0.073499	-3.5923E-05	-1.3242	-0.00064723	488.7604876508707	28.208	0.31894	28.208	28.119	28.438	0					25	11	4	0	0	0	0.048471	1	9061	9061		95.815	41.039	1	1114900			43849	6686	29122	29240	44414	44414	285				0.01718407817213574
TSLPSAICK	9	Carbamidomethyl (C)	_TSLPSAIC(Carbamidomethyl (C))K_	TSLPSAIC(1)K		TSLPSAIC(120)K		0	1	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7601013183594	2	488.760235	975.505917	0.61366	0.00029993	-2.4159	-0.0011808	-1.8022	-0.00088087	488.7596243984098	28.424	0.78321	28.424	27.798	28.581	0					50	16	6	0	0	0	0.01873	1	10421	10421		124.08	46.763	1	5102500			43850	6686	29122	29240	44415	44415	285				0.01718407817213574
TSLPSAICK	9	Carbamidomethyl (C)	_TSLPSAIC(Carbamidomethyl (C))K_	TSLPSAIC(1)K		TSLPSAIC(120)K		0	1	0		FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.75994873046875	2	488.760235	975.505917	0.78518	0.00038376	-2.2515	-0.0011005	-1.4663	-0.00071669	488.75956466297	28.401	0.26402	28.401	28.294	28.558	0					19	5	5	0	0	0	0.01873	1	10270	10270		124.08	49.825	1	4737700			43851	6686	29122	29240	44416	44416	285				0.01718407817213574
TSLPSFVTK	9	Unmodified	_TSLPSFVTK_					0	0	0		ENST00000467511.1_1_9:72346973-72349163:-|nuORF;PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant;ENSG00000188647|ENST00000340434|PTAR1	ENST00000467511.1_1_9:72346973-72349163:-|nuORF	ENST00000467511.1_1_9:72346973-72349163:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2765808105469	2	490.276575	978.538597	-0.54007	-0.00026478	0.10468	5.132E-05	-0.4354	-0.00021346	490.2765842370854	36.487	0.61161	36.487	36.132	36.744	0					25	12	3	0	0	0	0.24334	1	14220	14220		56.434	6.9922	1	524210			43852	7263	29123	29241	44417	44417					0.04846938211721863
TSLQHGFLV	9	Unmodified	_TSLQHGFLV_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2738037109375	2	501.274367	1000.53418	-1.0364	-0.00051953	1.1797	0.00059137	0.14331	7.1838E-05	501.27491753040584	32.796	0.1776	32.796	32.701	32.878	0					11	6	2	0	0	0	0.47038	1	10982	10982		35.618	6.4687	1	97512			43853	3651	29124	29242	44418	44418					0.03393473788810297
TSLREAEFSD	10	Unmodified	_TSLREAEFSD_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.770263671875	2	577.769842	1153.52513	-0.1163	-6.7193E-05	1.0711	0.00061884	0.95478	0.00055164	577.7705845697366	26.898	0.21446	26.898	26.833	27.048	0					17	7	3	0	0	0	0.56931	1	8499	8499		37.812	2.6595	1	407510			43854	2639	29125	29243	44419	44419					-0.04548964358195917
TSLRERGS	8	Unmodified	_TSLRERGS_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.244873046875	2	453.243598	904.472643	-0.12131	-5.4983E-05	2.3773	0.0010775	2.256	0.0010225	453.244831225393	28.491	0.21583	28.491	28.381	28.597	0					6	4	2	0	0	0	0.67394	1	10457	10457		37.159	3.6435	1	102050			43855	3353	29126	29244	44420	44420					0.01658542089535331
TSLRLKDE	8	Unmodified	_TSLRLKDE_					0	0	0		nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	nc|ENSG00000131242|Q86YS3-2|RAB11FIP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2688293457031	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.59	1	13.59	13.09	14.09	0								0	0	0	1.7419	1	3190	3190		37.159	0	1				43856	3711	29127	29245	44421	44421					0.04216866063575253
TSLSALYET	9	Unmodified	_TSLSALYET_					0	0	0			REV__nc|ENSG00000137033|O95760-3|IL33	REV__nc|ENSG00000137033|O95760-3|IL33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7456359863281	2	492.747847	983.481142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.272	1	14.272	13.772	14.772	0								0	0	0	0.29774	1	3665	3665		35.618	1.4457	1		+		43857	14897	29128	29246	44422	44422					-0.011259487845222793
TSLSGCGVRQ	10	Unmodified	_TSLSGCGVRQ_					0	0	0			REV__ENST00000377041.6_1_9:74489991-74525763:-|nuORF	REV__ENST00000377041.6_1_9:74489991-74525763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.25274658203125	2	504.250566	1006.48658	2.9313	0.0014781	1.3433	0.00067735	4.2746	0.0021555	504.25154299177024	22.813	0.46782	22.813	22.505	22.973	0					16	9	3	0	0	0	0.38194	1	7657	7657		58.23	1.5089	1	892180	+		43858	18728	29129	29247	44423	44423					-0.016405484736765175
TSLSGSIAAAA	11	Unmodified	_TSLSGSIAAAA_					0	0	0			REV__ENST00000361162.10_1_20:34330053-34330200:-|nuORF	REV__ENST00000361162.10_1_20:34330053-34330200:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.75250244140625	2	474.753464	947.492375	-0.010803	-5.1289E-06	-0.39173	-0.00018597	-0.40253	-0.0001911	474.7532453848837	17.097	0.26398	17.097	16.888	17.152	0					15	9	2	0	0	0	0.65907	1	4000	4000		31.53	0	1	57085	+		43859	18565	29130	29248	44424	44424					0.016528733096038195
TSLSKNPK	8	Unmodified	_TSLSKNPK_					0	0	0		RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant	RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant	RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.75311279296875	2	437.753267	873.491981	-0.27949	-0.00012235	-0.10658	-4.6657E-05	-0.38607	-0.00016901	437.75315880128977	21.247	0.11367	21.247	21.162	21.276	0					5	3	2	0	0	0	0.63077	1	5821	5821		44.117	5.3107	1	70753			43860	22353	29131	29249	44425	44425					0.050174983804254225
TSLSRTSKK	9	Unmodified	_TSLSRTSKK_					0	0	0			REV__PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant	REV__PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2965393066406	2	504.29583	1006.57711	1.0314	0.00052012	-2.571	-0.0012965	-1.5396	-0.00077642	504.29429236376507	21.959	1.503	21.959	21.458	22.961	0					53	30	3	0	0	0	0.16002	1	7233	7233		66.429	10.925	1	659810	+		43861	14707	29132	29250	44426	44426					0.07408243846236928
TSLSSLNKTK	10	Unmodified	_TSLSSLNKTK_					0	0	0			REV__PCDH7|p.D918Ifs*209|1|0.36|ENSG00000169851|chr4:30724168-30724168|A/-|frameshift_variant	REV__PCDH7|p.D918Ifs*209|1|0.36|ENSG00000169851|chr4:30724168-30724168|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.208251953125	3	360.208273	1077.60299	0.48247	0.00017379	-0.596	-0.00021468	-0.11353	-4.0896E-05	360.20809937006555	12.409	0.092795	12.409	12.347	12.44	0					8	3	3	0	0	0	0.73511	1	2608	2608		16.007	0.67366	1	405970	+		43862	21342	29133	29251	44427	44427					0.06729093297826694
TSLSVSTPK	9	Unmodified	_TSLSVSTPK_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275598-202275970:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.25830078125	2	460.258382	918.502212	0.816	0.00037557	-1.634	-0.00075207	-0.81803	-0.0003765	460.2576613287625	25.005	0.51106	25.005	24.698	25.209	0					25	12	3	0	0	0	0.13726	1	8493	8493		70.816	20.792	1	339050			43863	4047	29134	29252	44428	44428					0.039700613149989294
TSLSVSTPK	9	Unmodified	_TSLSVSTPK_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275598-202275970:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2579650878906	2	460.258382	918.502212	-0.88812	-0.00040876	0.43556	0.00020047	-0.45256	-0.00020829	460.2585839057169	24.76	0.41743	24.76	24.526	24.944	0					26	14	3	0	0	0	0.30841	1	7593	7593		49.536	8.7579	1	118060			43864	4047	29134	29252	44429	44429					0.039700613149989294
TSLSVSTPK	9	Unmodified	_TSLSVSTPK_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275598-202275970:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2583312988281	2	460.258382	918.502212	0.72246	0.00033252	-1.0745	-0.00049453	-0.352	-0.00016201	460.25779447964356	24.999	0.56049	24.999	24.645	25.205	0					25	11	3	0	0	0	0.12834	1	8809	8809		72.879	7.4139	1	642400			43865	4047	29134	29252	44430	44430					0.039700613149989294
TSLSVSTPK	9	Unmodified	_TSLSVSTPK_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275598-202275970:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2580261230469	2	460.258382	918.502212	0.86634	0.00039874	-1.7096	-0.00078686	-0.84328	-0.00038813	460.25769086815444	24.906	0.50035	24.906	24.661	25.162	0					26	10	4	0	0	0	0.037924	1	8665	8665		101.25	23.935	1	694500			43866	4047	29134	29252	44431	44431					0.039700613149989294
TSLTCLGGGV	10	Carbamidomethyl (C)	_TSLTC(Carbamidomethyl (C))LGGGV_	TSLTC(1)LGGGV		TSLTC(110)LGGGV		0	1	0			REV__ENST00000525484.5_1_11:8986226-8986655:+|nuORF	REV__ENST00000525484.5_1_11:8986226-8986655:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.73822021484375	2	482.742042	963.469531	-0.12712	-6.1364E-05	-2.6576	-0.001283	-2.7847	-0.0013443	482.74067388745425	16.748	0.53582	16.748	16.649	17.185	0					30	13	4	0	0	0	0.058645	1	4601	4601		106.42	10.225	1	4172300	+		43867	19988	29135	29253	44432	44432	703				-0.013664690794826129
TSLTDWLKH	9	Unmodified	_TSLTDWLKH_					0	0	0			REV__ENST00000551046.5_1_14:105452161-105455990:+|nuORF	REV__ENST00000551046.5_1_14:105452161-105455990:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.7923583984375	2	550.790381	1099.56621	1.665	0.00091707	0.87079	0.00047962	2.5358	0.0013967	550.7910813798786	23.404	0.96719	23.404	23.246	24.213	0					51	19	5	0	0	0	0.027316	1	8044	8044		111.65	26.733	1	25254000	+		43868	20198	29136	29254	44433	44433					0.02040841471944077
TSLTDWLKH	9	Unmodified	_TSLTDWLKH_					0	0	0			REV__ENST00000551046.5_1_14:105452161-105455990:+|nuORF	REV__ENST00000551046.5_1_14:105452161-105455990:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7919921875	2	550.790381	1099.56621	3.728	0.0020533	-1.0183	-0.00056087	2.7097	0.0014925	550.7900162167914	23.41	1.5039	23.41	23.252	24.756	0					57	30	3	0	0	0	0.030949	1	7919	7919		108.09	17.718	1	32886000	+		43869	20198	29136	29254	44434	44434					0.02040841471944077
TSLTPPGM	8	Unmodified	_TSLTPPGM_					0	0	0		ENST00000309311.6_1_19:3983161-3983224:-|nuORF	ENST00000309311.6_1_19:3983161-3983224:-|nuORF	ENST00000309311.6_1_19:3983161-3983224:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.2027893066406	2	402.202021	802.38949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.8	1	38.8	38.3	39.3	0								0	0	0	1.7419	1	15237	15237		35.201	0	1				43870	8538	29137	29255	44435	44435					-0.019609106826806055
TSLVGCQVI	9	Carbamidomethyl (C)	_TSLVGC(Carbamidomethyl (C))QVI_	TSLVGC(1)QVI		TSLVGC(56)QVI		0	1	0		nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;CLTCL1|p.P253Sfs*7|1|0.11|ENSG00000070371|chr22:19239313-19239314|-/A|frameshift_variant;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant;CLTCL1|p.T738Qfs*24|1|0.03|ENSG00000070371|chr22:19223971-19223972|-/TTCTG|frameshift_variant	nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000070371|P53675-2|CLTCL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7601013183594	2	488.760235	975.505917	-0.51542	-0.00025192	0.25357	0.00012393	-0.26185	-0.00012798	488.7603271877221	28.367	0.16695	28.367	28.311	28.478	0					5	3	2	0	0	0	0.25109	1	10282	10282		55.504	6.0627	1	275700			43871	1447	29138	29256	44436	44436	54				0.01718407817213574
TSLWQSLK	8	Unmodified	_TSLWQSLK_					0	0	0		NASP|p.T160Qfs*29|1|0.25|ENSG00000132780|chr1:45607383-45607383|A/-|frameshift_variant	NASP|p.T160Qfs*29|1|0.25|ENSG00000132780|chr1:45607383-45607383|A/-|frameshift_variant	NASP|p.T160Qfs*29|1|0.25|ENSG00000132780|chr1:45607383-45607383|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.76708984375	2	481.768917	961.523281	-2.9221	-0.0014078	-0.52352	-0.00025222	-3.4456	-0.00166	481.7686572172828	17.466	0.070305	17.466	17.431	17.501	0					4	2	2	0	0	0	0.63077	1	4365	4365		44.117	1.7207	1	86604			43872	11406	29139	29257	44437	44437					0.040980714145121055
TSMLYVVGK	9	Unmodified	_TSMLYVVGK_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2728271484375	2	499.272978	996.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.142	1	36.142	35.642	36.642	0								0	0	0	0.13137	1	11859	11859		64.207	25.401	1				43873	2462	29140	29258	44438	44438					0.032998823396496846
TSMLYVVGK	9	Unmodified	_TSMLYVVGK_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.27288818359375	2	499.272978	996.531403	0.6753	0.00033716	-1.0143	-0.00050639	-0.33896	-0.00016924	499.272555918077	36.422	0.36161	36.422	36.247	36.608	0					20	10	3	0	0	0	0.063823	1	13731	13731		90.37	47.974	1	396720			43874	2462	29140	29258	44439	44439					0.032998823396496846
TSMLYVVGK	9	Unmodified	_TSMLYVVGK_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.27288818359375	2	499.272978	996.531403	-0.011881	-5.9318E-06	-0.36009	-0.00017978	-0.37197	-0.00018572	499.27283843045745	36.398	0.30104	36.398	36.324	36.625	0					14	8	3	0	0	0	0.0406	1	14166	14166		98.629	48.605	1	227660			43875	2462	29140	29258	44440	44440					0.032998823396496846
TSMLYVVGK	9	Unmodified	_TSMLYVVGK_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.27301025390625	2	499.272978	996.531403	-0.33218	-0.00016585	0.44172	0.00022054	0.10954	5.4692E-05	499.27329767263547	36.229	0.099861	36.229	36.142	36.242	0					5	3	2	0	0	0	0.17854	1	12947	12947		64.207	25.401	1	49027			43876	2462	29140	29258	44441	44441					0.032998823396496846
TSMLYVVGK	9	Unmodified	_TSMLYVVGK_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2728576660156	2	499.272978	996.531403	-0.7316	-0.00036527	0.28446	0.00014202	-0.44714	-0.00022325	499.2732453477121	36.338	0.41457	36.338	36.233	36.647	0					15	8	3	0	0	0	0.056004	1	14124	14124		93.143	43.702	1	399050			43877	2462	29140	29258	44442	44442					0.032998823396496846
TSMSFSSHK	9	Unmodified	_TSMSFSSHK_					0	0	0			REV__ENST00000445995.2_1_9:98056039-98057089:+|nuORF	REV__ENST00000445995.2_1_9:98056039-98057089:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2318420410156	2	506.231842	1010.44913	1.0814	0.00054744	-1.2201	-0.00061767	-0.13874	-7.0233E-05	506.231286690115	15.922	0.31074	15.922	15.719	16.03	0					8	6	2	0	0	0	0.26904	1	4462	4462		53.351	3.3269	1	751880	+		43878	19277	29141	29259	44443	44443					-0.05567639739308561
TSMSKMFVK	9	Unmodified	_TSMSKMFVK_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7720947265625	2	529.772288	1057.53002	0.017293	9.1612E-06	-0.31169	-0.00016512	-0.2944	-0.00015596	529.7722249777381	26.809	0.11021	26.809	26.734	26.844	0					11	4	3	0	0	0	0.46194	1	8471	8471		36.447	7.2972	1	115640			43879	257	29142	29260	44444	44444					0.0035592497922607436
TSMSKMFVK	9	Unmodified	_TSMSKMFVK_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7723999023438	2	529.772288	1057.53002	1.7353	0.00091933	-1.3928	-0.00073788	0.34252	0.00018146	529.7713970911537	27.063	0.30715	27.063	26.811	27.118	0					8	6	2	0	0	0	0.085655	1	9751	9751		82.75	35.093	1	798350			43880	257	29142	29260	44445	44445					0.0035592497922607436
TSMSKMFVK	9	Unmodified	_TSMSKMFVK_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7730102539062	2	529.772288	1057.53002	1.6354	0.00086638	-1.3402	-0.00071001	0.29517	0.00015637	529.7721035732621	26.993	0.26912	26.993	26.885	27.154	0					15	5	4	0	0	0	0.022525	1	9619	9619		117.81	54.505	1	949420			43881	257	29142	29260	44446	44446					0.0035592497922607436
TSMSKMFVK	9	Unmodified	_TSMSKMFVK_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.7725219726562	2	529.772288	1057.53002	3.4461	0.0018257	-2.9205	-0.0015472	0.5256	0.00027845	529.7705101772809	27.027	0.31418	27.027	26.722	27.036	0					7	6	2	0	0	0	0.037924	1	9616	9616		101.25	42.471	1	576550			43882	257	29142	29260	44447	44447					0.0035592497922607436
TSMVVSTAK	9	Unmodified	_TSMVVSTAK_					0	0	0			REV__ENSG00000158553|ENST00000444565|POM121L2	REV__ENSG00000158553|ENST00000444565|POM121L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2472839355469	2	462.24696	922.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.917	1	22.917	22.417	23.417	0								0	0	0	0.13137	1	6556	6556		64.207	10.856	1		+		43883	15684	29143	29261	44448	44448					0.015027189258717044
TSMVVSTAK	9	Unmodified	_TSMVVSTAK_					0	0	0			REV__ENSG00000158553|ENST00000444565|POM121L2	REV__ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2470703125	2	462.24696	922.479368	0.085026	3.9303E-05	0.24846	0.00011485	0.33348	0.00015415	462.24710144318647	23.242	0.14848	23.242	23.145	23.294	0					6	3	2	0	0	0	0.087861	1	7676	7676		82.241	22.122	1	337380	+		43884	15684	29143	29261	44449	44449					0.015027189258717044
TSMVVSTAK	9	Unmodified	_TSMVVSTAK_					0	0	0			REV__ENSG00000158553|ENST00000444565|POM121L2	REV__ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2464294433594	2	462.24696	922.479368	-0.14718	-6.8035E-05	-2.7841	-0.0012869	-2.9313	-0.001355	462.2456693746859	22.919	0.51765	22.919	22.811	23.329	0					25	10	3	0	0	0	0.50858	1	7985	7985		31.53	1.0262	1	1380000	+		43885	15684	29143	29261	44450	44450					0.015027189258717044
TSNIIAKAG	9	Unmodified	_TSNIIAKAG_					0	0	0			REV__nc|ENSG00000051128|Q9NSC5-3|HOMER3	REV__nc|ENSG00000051128|Q9NSC5-3|HOMER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.75262451171875	2	437.753267	873.491981	0.70137	0.00030703	-1.8283	-0.00080037	-1.127	-0.00049334	437.7525159623033	21.515	0.21846	21.515	21.407	21.625	0					14	4	5	0	0	0	0.071197	1	7133	7133		87.754	2.8388	1	1463900	+		43886	20929	29144	29262	44451	44451					0.050174983804254225
TSNIIAKAG	9	Unmodified	_TSNIIAKAG_					0	0	0			REV__nc|ENSG00000051128|Q9NSC5-3|HOMER3	REV__nc|ENSG00000051128|Q9NSC5-3|HOMER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.75323486328125	2	437.753267	873.491981	-3.0865	-0.0013511	2.4824	0.0010867	-0.6041	-0.00026444	437.7544939328771	21.338	0.15734	21.338	21.278	21.435	0					6	3	2	0	0	0	0.13519	1	6175	6175		71.296	2.5089	1	191730	+		43887	20929	29144	29262	44452	44452					0.050174983804254225
TSNKRKRR	8	Unmodified	_TSNKRKRR_					0	0	0			REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.29345703125	2	523.320506	1044.62646	3.4135	0.0017864	-0.162	-8.4776E-05	3.2515	0.0017016	523.3204355011752	17.404	0.2106	17.404	17.353	17.563	0					6	4	2	0	0	0	0.72381	1	5006	5006		30.504	30.504	1	1483600	+		43888	16333	29145	29263	44453	44453					0.1059299664568698
TSNKSLVK	8	Unmodified	_TSNKSLVK_					0	0	0			REV__ENSG00000109944|ENST00000227349|JHY	REV__ENSG00000109944|ENST00000227349|JHY	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.7608947753906	2	438.761092	875.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.98	1	12.98	12.48	13.48	0								0	0	0	1.7419	1	2900	2900		30.504	0	1		+		43889	13921	29146	29264	44454	44454					0.06489784897462414
TSNKVPNL	8	Unmodified	_TSNKVPNL_					0	0	0			REV__tr|U7STL4|U7STL4_FUSNUDUF452domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01103PE=4SV=1	REV__tr|U7STL4|U7STL4_FUSNUDUF452domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01103PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.745849609375	2	436.745442	871.476331	-0.64304	-0.00028084	0.57034	0.00024909	-0.072698	-3.1751E-05	436.74569524734903	25.418	0.2359	25.418	25.252	25.488	0					11	5	3	0	0	0	0.7126	1	8060	8060		31.955	1.4512	1	153790	+		43890	21927	29147	29265	44455	44455					0.03545211863365694
TSNPVTTTK	9	Unmodified	_TSNPVTTTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7532043457031	2	474.753464	947.492375	-0.45939	-0.0002181	0.15228	7.2294E-05	-0.30712	-0.0001458	474.7533867076785	17.37	0.53096	17.37	17.088	17.619	0					32	13	3	0	0	0	0.067603	1	4845	4845		89.029	13.986	1	580360			43891	5547	29148	29266	44456	44456					0.016528733096151882
TSNPVTTTK	9	Unmodified	_TSNPVTTTK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7535095214844	2	474.753464	947.492375	-0.44325	-0.00021043	-0.24015	-0.00011401	-0.6834	-0.00032445	474.75334772132925	17.131	0.43458	17.131	16.806	17.24	0					28	12	3	0	0	0	0.21419	1	4145	4145		59.931	25.758	1	591810			43892	5547	29148	29266	44457	44457					0.016528733096151882
TSPGSPKTM	9	Unmodified	_TSPGSPKTM_					0	0	0		PRKAG2|p.V105M|1|0.25|ENSG00000106617|chr7:151781305-151781305|C/T|missense_variant	PRKAG2|p.V105M|1|0.25|ENSG00000106617|chr7:151781305-151781305|C/T|missense_variant	PRKAG2|p.V105M|1|0.25|ENSG00000106617|chr7:151781305-151781305|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.223388671875	2	453.223485	904.432418	-1.1986	-0.00054324	0.94175	0.00042682	-0.25685	-0.00011641	453.22409411069793	23.644	0.28938	23.644	23.454	23.743	0					17	10	2	0	0	0	0.47038	1	7095	7095		35.618	0	1	132030			43893	11971	29149	29267	44458	44458					-0.02362140625257325
TSPKAVPAT	9	Unmodified	_TSPKAVPAT_					0	0	0			REV__sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	REV__sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.27154541015625	2	436.247818	870.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.612	1	20.612	20.112	21.112	0								0	0	0	0.27025	1	6423	6423		40.778	1.972	1		+		43894	21559	29150	29268	44459	44459					0.04066096006135922
TSPLLCPVAS	10	Unmodified	_TSPLLCPVAS_					0	0	0			REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.26385498046875	2	494.26261	986.510668	2.7997	0.0013838	-0.063325	-3.1299E-05	2.7364	0.0013525	494.2624211644653	12.045	0.14042	12.045	11.951	12.091	0					8	3	3	0	0	0	0.52707	1	2477	2477		42.396	1.618	1	225890	+		43895	18827	29151	29269	44460	44460					0.016872919599677516
TSPLVRKSP	9	Unmodified	_TSPLVRKSP_					0	0	0		ENST00000430335.1_3_22:38699202-38712683:-|nuORF	ENST00000430335.1_3_22:38699202-38712683:-|nuORF	ENST00000430335.1_3_22:38699202-38712683:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	328.8661193847656	3	328.86607	983.57638	-0.66753	-0.00021953	0.65434	0.00021519	-0.013186	-4.3364E-06	328.86632761414313	19.089	0.36437	19.089	19.026	19.39	0					13	11	2	0	0	0	0.50461	1	5113	5113		31.53	0	1	221810			43896	9487	29152	29270	44461	44461					0.08393449197183145
TSPQALVQP	9	Unmodified	_TSPQALVQP_					0	0	0			REV__nc|ENSG00000183765|O96017-4|CHEK2	REV__nc|ENSG00000183765|O96017-4|CHEK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.75823974609375	2	470.758549	939.502546	0.15685	7.3836E-05	-0.87872	-0.00041366	-0.72187	-0.00033983	470.75824161740485	34.639	0.17165	34.639	34.573	34.744	0					6	4	2	0	0	0	0.43426	1	12943	12943		38.806	0.99462	1	54686	+		43897	16951	29153	29271	44462	44462					0.03037481034857592
TSPQAYGEQLK	11	Unmodified	_TSPQAYGEQLK_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	611.3084716796875	2	611.309135	1220.60372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.767	1	22.767	22.267	23.267	0								0	0	0	0.2652	1	6488	6488		56.632	5.4396	1				43898	6865	29154	29272	44463	44463					0.0022388794689049973
TSPQLDLK	8	Unmodified	_TSPQLDLK_					0	0	0		ENST00000317613.10_1_9:116303752-116304061:+|nuORF	ENST00000317613.10_1_9:116303752-116304061:+|nuORF	ENST00000317613.10_1_9:116303752-116304061:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.2535705566406	2	451.2531	900.491647	0.0018852	8.5071E-07	-0.67325	-0.00030381	-0.67136	-0.00030295	451.25293276416687	21.32	0.31009	21.32	21.135	21.445	0					13	9	2	0	0	0	0.43813	1	5831	5831		66.429	6.311	1	191950			43899	8585	29155	29273	44464	44464					0.037420786605594
TSPTKESK	8	Unmodified	_TSPTKESK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.235107421875	2	439.234907	876.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.898	1	14.898	14.398	15.398	0								0	0	0	1.7419	1	3305	3305		42.396	9.5837	1				43900	4668	29156	29274	44465	44465					0.012092017638678954
TSPWCTLLALP	11	Unmodified	_TSPWCTLLALP_					0	0	0			REV__nc|ENSG00000165966|Q6ZMN7-4|PDZRN4	REV__nc|ENSG00000165966|Q6ZMN7-4|PDZRN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.822265625	2	601.317917	1200.62128	0.89358	0.00053733	1.5323	0.00092141	2.4259	0.0014587	601.3187095434878	29.016	0.42358	29.016	28.911	29.334	0					28	9	5	0	0	0	0.49805	1	10819	10819		44.377	10.456	1	2222600	+		43901	21102	29157	29275	44466	44466					0.02899511948203326
TSPWGGVI	8	Unmodified	_TSPWGGVI_					0	0	0			REV__ENST00000591753.1_2_17:40716095-40716197:+|nuORF	REV__ENST00000591753.1_2_17:40716095-40716197:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.7160339355469	2	408.716153	815.417754	0.051563	2.1075E-05	0.0089016	3.6382E-06	0.060464	2.4713E-05	408.71613440904656	35.007	0.18944	35.007	34.933	35.123	0					9	5	2	0	0	0	0.72892	1	13532	13532		29.842	0	1	125120	+		43902	18855	29158	29276	44467	44467					0.0026615528890943096
TSQARGVGLE	10	Unmodified	_TSQARGVGLE_					0	0	0		ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.26953125	2	509.269813	1016.52507	-0.043529	-2.2168E-05	0.52941	0.00026961	0.48588	0.00024745	509.2700630851408	13.445	0.4287	13.445	13.209	13.638	0					19	9	3	0	0	0	0.41335	1	3090	3090		54.776	1.8396	1	275870			43903	5735	29159	29277	44468	44468					0.01747080432483017
TSQDETYEVK	10	Unmodified	_TSQDETYEVK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	600.2745971679688	2	600.274958	1198.53536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.191	1	13.191	12.691	13.691	0								0	0	0	0.3805	1	2693	2693		36.447	2.2742	1				43904	346	29160	29278	44469	44469					-0.055964014236451476
TSQLYTVK	8	Unmodified	_TSQLYTVK_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.2607116699219	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.246	1	38.246	37.746	38.746	0								0	0	0	1.7419	1	12483	12483		32.812	1.2826	1				43905	4584	29161	29279	44470	44470					0.035583651776164515
TSQNLPKR	8	Unmodified	_TSQNLPKR_					0	0	0		ENSG00000131732|ENST00000407610|ZCCHC9;ZCCHC9|p.N51Mfs*18|1|0.22|ENSG00000131732|chr5:81304905-81304905|A/-|frameshift_variant	ENSG00000131732|ENST00000407610|ZCCHC9	ENSG00000131732|ENST00000407610|ZCCHC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2688293457031	2	472.269616	942.524678	-0.74895	-0.0003537	-0.10509	-4.9629E-05	-0.85403	-0.00040333	472.2693562879108	12.666	0.088807	12.666	12.606	12.694	0					8	5	2	0	0	0	0.37378	1	2524	2524		73.975	13.003	1	81408			43906	3736	29162	29280	44471	44471					0.051117055032818826
TSQPFQVLK	9	Unmodified	_TSQPFQVLK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2955932617188	2	524.295299	1046.57605	0.092253	4.8368E-05	0.37285	0.00019548	0.4651	0.00024385	524.2954990269153	34.688	0.31684	34.688	34.561	34.878	0					14	8	3	0	0	0	0.17854	1	12915	12915		64.207	5.9773	1	585910			43907	3246	29163	29281	44472	44472					0.054620294773030764
TSQPFQVLK	9	Unmodified	_TSQPFQVLK_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2960815429688	2	524.295299	1046.57605	-1.2627	-0.00066205	1.7111	0.0008971	0.44831	0.00023505	524.29631540225	34.436	0.14599	34.436	34.344	34.49	0					12	5	3	0	0	0	0.28897	1	12181	12181		51.193	7.0759	1	146590			43908	3246	29163	29281	44473	44473					0.054620294773030764
TSQRIFITY	9	Unmodified	_TSQRIFITY_					0	0	0		DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.8060302734375	2	564.806031	1127.59751	1.8982	0.0010721	-1.6516	-0.00093283	0.2466	0.00013928	564.8051665896156	39.581	0.16998	39.581	39.509	39.679	0					16	6	3	0	0	0	0.51991	1	15568	15568		30.318	4.7437	1	208790			43909	772	29164	29282	44474	44474					0.038814145060541705
TSQTLLLL	8	Unmodified	_TSQTLLLL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6;ENST00000564180.1_1_16:68877520-68901131:+|nuORF	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7738952636719	2	444.773668	887.532783	0.59141	0.00026305	-0.53064	-0.00023602	0.060773	2.703E-05	444.7734399185229	48.927	0.20202	48.927	48.848	49.05	0					18	12	2	0	0	0	0.24498	1	17726	17726		110.34	0	1	90234			43910	2209	29165	29283	44475	44475					0.08451839700046548
TSQTLLLL	8	Unmodified	_TSQTLLLL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6;ENST00000564180.1_1_16:68877520-68901131:+|nuORF	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.773681640625	2	444.773668	887.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.645	1	48.645	48.145	49.145	0								0	0	0	1.7419	1	16127	16127		85.359	11.385	1				43911	2209	29165	29283	44476	44476					0.08451839700046548
TSRFPGRGA	9	Unmodified	_TSRFPGRGA_					0	0	0		ENST00000582478.5_1_17:80008793-80009165:-|nuORF	ENST00000582478.5_1_17:80008793-80009165:-|nuORF	ENST00000582478.5_1_17:80008793-80009165:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7537536621094	2	474.754133	947.493713	-2.6332	-0.0012501	0.83103	0.00039453	-1.8021	-0.00085557	474.7544625975253	17.125	0.46943	17.125	16.834	17.303	0					30	13	3	0	0	0	0.44593	1	4140	4140		37.812	37.812	1	648450			43912	10877	29166	29284	44477	44477					0.01786552189048507
TSRIAIGPL	9	Unmodified	_TSRIAIGPL_					0	0	0		ENST00000569764.1_16:18870304-18870499:-|nuORF;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1	ENST00000569764.1_16:18870304-18870499:-|nuORF	ENST00000569764.1_16:18870304-18870499:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2851257324219	2	464.284734	926.554916	2.5989	0.0012066	-3.9349	-0.0018269	-1.336	-0.00062029	464.28303132492306	45.275	0.18002	45.275	45.19	45.37	0					11	8	2	0	0	0	0.2873	1	18139	18139		51.335	0	1	56978			43913	5199	29167	29285	44478	44478					0.08870064168456793
TSRITTFWKC	10	Unmodified	_TSRITTFWKC_					0	0	0		chr12:90964326-90970044|237|14.79|0.2|6.24|-|1|EPYC,EPYC|1	chr12:90964326-90970044|237|14.79|0.2|6.24|-|1|EPYC,EPYC|1	chr12:90964326-90970044|237|14.79|0.2|6.24|-|1|EPYC,EPYC|1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.8823547363281	3	414.881502	1241.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.878	1	20.878	20.378	21.378	0								0	0	0	0.4146	1	5954	5954		26.063	1.8316	1				43914	518	29168	29286	44479	44479					0.0115314603697243
TSRKRRWS	8	Unmodified	_TSRKRRWS_					0	0	0			REV__ENST00000467906.5_1_6:43030793-43034124:+|nuORF	REV__ENST00000467906.5_1_6:43030793-43034124:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	359.5417175292969	3	359.540579	1075.59991	3.5946	0.0012924	-0.3668	-0.00013188	3.2278	0.0011605	359.5403592591581	25.634	0.18035	25.634	25.568	25.748	0					6	5	2	0	0	0	0.79294	1	8006	8006		15.642	0.3087	1	75803	+		43915	19435	29169	29287	44480	44480					0.06513307754357811
TSRPRRVV	8	Unmodified	_TSRPRRVV_					0	0	0		ENST00000533871.6_2_11:133807790-133814210:-|nuORF	ENST00000533871.6_2_11:133807790-133814210:-|nuORF	ENST00000533871.6_2_11:133807790-133814210:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7999267578125	2	485.798875	969.583196	2.5048	0.0012168	-0.13887	-6.7463E-05	2.366	0.0011494	485.7988179644405	33.042	0.74217	33.042	32.59	33.332	0					45	15	4	0	0	0	0.26534	1	12413	12413		94.006	94.006	1	11076000			43916	10468	29170	29288	44481	44481					0.09718806868420415
TSRRWGAY	8	Unmodified	_TSRRWGAY_					0	0	0			REV__MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	REV__MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2513732910156	2	498.754133	995.493713	0.17062	8.5095E-05	-2.876	-0.0014344	-2.7053	-0.0013493	498.7532233860401	25.958	0.4382	25.958	25.778	26.216	0					21	8	3	0	0	0	0.29779	1	8274	8274		83.287	8.2439	1	2134300	+		43917	20904	29171	29289	44482	44482					-0.004214478109702213
TSRSTLIE	8	Unmodified	_TSRSTLIE_					0	0	0		ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.74798583984375	2	453.748182	905.481811	-0.41817	-0.00018974	-0.16308	-7.3999E-05	-0.58125	-0.00026374	453.7481215789803	17.387	0.30428	17.387	17.293	17.598	0					15	6	3	0	0	0	0.3049	1	5017	5017		82.241	1.7859	1	625310			43918	8074	29172	29290	44483	44483					0.02528890655196392
TSRWNPWK	8	Unmodified	_TSRWNPWK_					0	0	0		ENST00000469423.1_1_19:12757375-12758379:-|nuORF	ENST00000469423.1_1_19:12757375-12758379:-|nuORF	ENST00000469423.1_1_19:12757375-12758379:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.77734375	2	537.777608	1073.54066	-0.3039	-0.00016343	-0.10712	-5.7609E-05	-0.41102	-0.00022104	537.7775293039588	28.741	0.49261	28.741	28.598	29.091	0					51	19	5	0	0	0	0.64096	1	9282	9282		42.474	0	1	1708700			43919	9826	29173	29291	44484	44484					0.006834117401695039
TSSAVTSVAK	10	Unmodified	_TSSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7612609863281	2	475.761289	949.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.257	1	19.257	18.757	19.757	0								0	0	0	0.031047	1	5780	5780		96.034	13.283	1				43920	5846	29174	29292	44485	44485					0.03125159826674917
TSSDVIEMK	9	Unmodified	_TSSDVIEMK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2474365234375	2	505.247157	1008.47976	0.80138	0.00040489	-0.28356	-0.00014327	0.51781	0.00026162	505.2471072868308	27.489	0.25794	27.489	27.378	27.636	0					11	6	2	0	0	0	0.035106	1	9609	9609		104.01	24.301	1	276510			43921	1186	29175	29293	44486	44486					-0.024139061449204746
TSSDVIEMK	9	Unmodified	_TSSDVIEMK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.24749755859375	2	505.247157	1008.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.273	1	27.273	26.773	27.773	0								0	0	0	0.33029	1	8672	8672		29.17	1.2878	1				43922	1186	29175	29293	44487	44487					-0.024139061449204746
TSSDVIEMK	9	Unmodified	_TSSDVIEMK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.24676513671875	2	505.247157	1008.47976	0.11853	5.9886E-05	-0.74576	-0.00037679	-0.62723	-0.00031691	505.2468409959174	27.481	0.30934	27.481	27.372	27.682	0					11	6	3	0	0	0	0.095583	1	9972	9972		80.455	23.734	1	436670			43923	1186	29175	29293	44488	44488					-0.024139061449204746
TSSDVIEMK	9	Unmodified	_TSSDVIEMK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2472839355469	2	505.247157	1008.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.334	1	27.334	26.834	27.834	0								0	0	0	0.17378	1	8928	8928		54.776	5.3348	1				43924	1186	29175	29293	44489	44489					-0.024139061449204746
TSSDVIEMK	9	Unmodified	_TSSDVIEMK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.246826171875	2	505.247157	1008.47976	-0.31756	-0.00016045	-0.65745	-0.00033218	-0.97502	-0.00049262	505.24692562107566	27.416	0.42396	27.416	27.204	27.628	0					13	8	3	0	0	0	0.017421	1	9822	9822		126.24	52.268	1	384490			43925	1186	29175	29293	44490	44490					-0.024139061449204746
TSSELAKKSK	10	Unmodified	_TSSELAKKSK_					0	0	0		ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.8102416992188	2	539.808771	1077.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.177	1	12.177	11.677	12.677	0								0	0	0	0.41767	1	2346	2346		14.137	0	1				43926	6856	29176	29294	44491	44491					0.06729093297849431
TSSGFIAAMV	10	Unmodified	_TSSGFIAAMV_					0	0	0		ENST00000492522.3_2_17:46781973-46782216:+|nuORF	ENST00000492522.3_2_17:46781973-46782216:+|nuORF	ENST00000492522.3_2_17:46781973-46782216:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.24822998046875	2	492.24696	982.479368	3.4625	0.0017044	-0.63275	-0.00031147	2.8297	0.0013929	492.2468213263304	28.75	0.24577	28.75	28.653	28.899	0					21	9	3	0	0	0	0.42631	1	9284	9284		53.351	10.955	1	285070			43927	10082	29177	29295	44492	44492					-0.012572810741289686
TSSGFLGPLH	10	Unmodified	_TSSGFLGPLH_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.26446533203125	2	508.263999	1014.51345	2.9679	0.0015085	-1.753	-0.00089098	1.2149	0.00061749	508.2629079992869	41.104	0.26785	41.104	40.959	41.227	0					15	6	3	0	0	0	0.46128	1	16312	16312		55.504	7.5886	1	322440	+		43928	14764	29178	29296	44493	44493					0.006768834091303688
TSSGVAPSRPG	11	Unmodified	_TSSGVAPSRPG_					0	0	0			REV__ENST00000355703.3_1_11:65383672-65384310:+|nuORF	REV__ENST00000355703.3_1_11:65383672-65384310:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.263916015625	2	508.261988	1014.50942	1.1389	0.00057885	2.6885	0.0013665	3.8274	0.0019453	508.2633028454086	41.167	0.23267	41.167	41.034	41.266	0					23	9	3	0	0	0	0.52726	1	16169	16169		40.058	0	1	234180	+		43929	18511	29179	29297	44494	44494					0.0027479391542328813
TSSILTSK	8	Unmodified	_TSSILTSK_					0	0	0		ENST00000342085.8_1_16:2649834-2650143:+|nuORF	ENST00000342085.8_1_16:2649834-2650143:+|nuORF	ENST00000342085.8_1_16:2649834-2650143:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	418.73834228515625	2	418.739825	835.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.731	1	27.731	27.231	28.231	0								0	0	0	1.7419	1	10080	10080		76.847	10.417	1				43930	8738	29180	29298	44495	44495					0.04078389769233581
TSSILYNLQ	9	Unmodified	_TSSILYNLQ_					0	0	0			REV__STARD6|p.I54Mfs*62|1|0.11|ENSG00000174448|chr18:54337230-54337231|-/AC|frameshift_variant	REV__STARD6|p.I54Mfs*62|1|0.11|ENSG00000174448|chr18:54337230-54337231|-/AC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7767944335938	2	519.776939	1037.53933	0.22179	0.00011528	0.19962	0.00010376	0.42141	0.00021904	519.7770162093937	26.77	0.28231	26.77	26.658	26.941	0					24	10	3	0	0	0	0.37197	1	8434	8434		44.117	0.46601	1	883850	+		43931	21610	29181	29299	44496	44496					0.022057328607616
TSSIMQKLK	9	Unmodified	_TSSIMQKLK_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2959594726562	2	518.296985	1034.57942	-1.408	-0.00072974	-0.83381	-0.00043216	-2.2418	-0.0011619	518.2965192857617	32.923	0.50296	32.923	32.789	33.292	0					43	14	5	0	0	0	0.1115	1	11471	11471		76.774	2.5191	1	8633800			43932	486	29182	29300	44497	44497					0.06350956259666418
TSSLSDNLNTL	11	Unmodified	_TSSLSDNLNTL_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.79052734375	2	582.790775	1163.567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.306	1	44.306	43.806	44.806	0								0	0	0	0.31508	1	15237	15237		50.034	3.5767	1		+		43933	13562	29183	29301	44498	44498					-0.00824408669677723
TSSLSPVTL	9	Unmodified	_TSSLSPVTL_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.7520446777344	2	452.752933	903.491313	-1.1949	-0.00054102	-0.37483	-0.0001697	-1.5698	-0.00071072	452.75287560133006	29.388	0.1829	29.388	29.28	29.463	0					9	7	2	0	0	0	0.20551	1	9554	9554		60.972	6.1956	1	50663	+		43934	14014	29184	29302	44499	44499					0.035706589407254796
TSSLVPPYL	9	Unmodified	_TSSLVPPYL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.76953125	2	488.771126	975.527698	-0.088358	-4.3187E-05	-3.7126	-0.0018146	-3.801	-0.0018578	488.7691192926174	23.054	0.11435	23.054	23.004	23.118	0					7	4	2	0	0	0	0.1115	1	6613	6613		71.378	21.936	1	67695			43935	4109	29185	29303	44500	44500					0.038955358374209936
TSSPLSQNDS	10	Unmodified	_TSSPLSQNDS_					0	0	0		ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.2360229492188	2	518.233093	1034.45163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.332	1	25.332	24.832	25.832	0								0	0	0	0.34115	1	7614	7614		44.377	7.9304	1				43936	1360	29186	29304	44501	44501					-0.06421512800670826
TSSPTPPPPPP	11	Unmodified	_TSSPTPPPPPP_					0	0	0			REV__ENSG00000100312|ENST00000216139|ACR	REV__ENSG00000100312|ENST00000216139|ACR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.7774047851562	2	537.776939	1073.53933	0.69531	0.00037392	0.20861	0.00011218	0.90391	0.0004861	537.7769411495692	28.967	0.61491	28.967	28.809	29.424	0					44	12	5	0	0	0	0.52516	1	10690	10690		42.396	6.7778	1	7308400	+		43937	13538	29187	29305	44502	44502					0.005497328607589225
TSSQSLRKL	9	Unmodified	_TSSQSLRKL_					0	0	0		nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;ENST00000532083.1_1_1:247607259-247611803:+|nuORF;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3	nc|ENSG00000162711|Q96P20-5|NLRP3	nc|ENSG00000162711|Q96P20-5|NLRP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.5328369140625	3	340.532979	1018.57711	0.67132	0.00022861	-0.87821	-0.00029906	-0.20689	-7.0452E-05	340.53263845423095	19.313	0.15825	19.313	19.215	19.373	0					8	3	3	0	0	0	0.59802	1	5818	5818		22.58	0	1	568530			43938	5493	29188	29306	44503	44503					0.06856243846232246
TSSRVDHVM	9	Oxidation (M)	_TSSRVDHVM(Oxidation (M))_		TSSRVDHVM(1)		TSSRVDHVM(71)	0	0	1		ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.24853515625	2	524.248023	1046.48149	1.784	0.00093526	-0.60858	-0.00031905	1.1754	0.00061622	524.2478105821024	28.132	2.2181	28.132	27.304	29.522	0					98	46	3	0	0	0	0.13519	2	10241	10241;10423		71.296	71.296	1	11178000			43939	2583	29189	29307	44504;44505	44504		113			-0.039888523363288186
TSSSHALIGQM	11	Unmodified	_TSSSHALIGQM_					0	0	0			REV__ENST00000494399.5_1_1:45480123-45480207:+|nuORF	REV__ENST00000494399.5_1_1:45480123-45480207:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.85357666015625	3	377.853612	1130.53901	0.45973	0.00017371	-0.68598	-0.0002592	-0.22625	-8.5488E-05	377.8533602743157	20.404	0.16506	20.404	20.297	20.462	0					5	3	2	0	0	0	0.78372	1	6621	6621		18.531	6.3244	1	162730	+		43940	19750	29190	29308	44506	44506					-0.021040101307335135
TSSSPRTM	8	Unmodified	_TSSSPRTM_					0	0	0			REV__ENST00000521993.2_1_8:37602115-37602163:+|nuORF	REV__ENST00000521993.2_1_8:37602115-37602163:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.7052307128906	2	433.70546	865.396366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.432	1	16.432	15.932	16.932	0								0	0	0	1.7419	1	3939	3939		53.351	5.4358	1		+		43941	19964	29191	29309	44507	44507					-0.04171597802121596
TSSSTSGSSDK	11	Unmodified	_TSSSTSGSSDK_					0	0	0		nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1;nc|ENSG00000076242|P40692-2|MLH1	nc|ENSG00000076242|P40692-3|MLH1	nc|ENSG00000076242|P40692-3|MLH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.22705078125	2	522.228007	1042.44146	-1.3099	-0.00068409	-0.19637	-0.00010255	-1.5063	-0.00078664	522.2279063340118	18.951	0.23457	18.951	18.872	19.107	0					6	5	2	0	0	0	0.74306	1	5069	5069		23.523	23.523	1	97389			43942	1557	29192	29310	44508	44508					-0.0780612052590186
TSSVFMSLH	9	Unmodified	_TSSVFMSLH_					0	0	0		ENST00000376723.7_1_2:128948434-128948581:+|nuORF	ENST00000376723.7_1_2:128948434-128948581:+|nuORF	ENST00000376723.7_1_2:128948434-128948581:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7455749511719	2	504.744585	1007.47462	-0.3559	-0.00017964	2.5548	0.0012895	2.1989	0.0011099	504.7460116383691	17.539	0.16783	17.539	17.43	17.598	0					5	3	2	0	0	0	0.35045	1	5094	5094		45.952	10.334	1	237000			43943	9044	29193	29311	44509	44509					-0.02882165216874455
TSSVSFPK	8	Unmodified	_TSSVSFPK_					0	0	0			REV__ENSG00000144747|ENST00000398559|TMF1	REV__ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	426.7265319824219	2	426.726718	851.438883	-1.0159	-0.00043351	0.82531	0.00035218	-0.19059	-8.133E-05	426.7269830815256	17.98	0.20265	17.98	17.869	18.072	0					11	5	3	0	0	0	0.25485	1	4615	4615		97.473	12.113	1	867140	+		43944	15242	29194	29312	44510	44510					0.007221205977657519
TSSVSFPK	8	Unmodified	_TSSVSFPK_					0	0	0			REV__ENSG00000144747|ENST00000398559|TMF1	REV__ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	426.726318359375	2	426.726718	851.438883	-0.11489	-4.9029E-05	-0.78432	-0.00033469	-0.89922	-0.00038372	426.7264751742965	18.059	0.11214	18.059	17.955	18.067	0					4	2	2	0	0	0	0.3961	1	4628	4628		71.296	7.9894	1	77366	+		43945	15242	29194	29312	44511	44511					0.007221205977657519
TSTCSPIISK	10	Unmodified	_TSTCSPIISK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.77099609375	2	518.7708	1035.52705	1.9779	0.0010261	-1.5397	-0.00079876	0.43821	0.00022733	518.7702710520238	25.218	0.15936	25.218	25.115	25.275	0					9	3	3	0	0	0	0.48965	1	8599	8599		46.457	13.644	1	140590			43946	6249	29195	29313	44512	44512					0.010703731260491622
TSTCSPIISK	10	Unmodified	_TSTCSPIISK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.771240234375	2	518.7708	1035.52705	1.1031	0.00057225	-0.45449	-0.00023578	0.64859	0.00033647	518.7706759722573	25.163	0.31932	25.163	25.056	25.375	0					15	6	3	0	0	0	0.24329	1	8908	8908		74.165	28.193	1	354300			43947	6249	29195	29313	44513	44513					0.010703731260491622
TSTCSPIISK	10	Unmodified	_TSTCSPIISK_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7710571289062	2	518.7708	1035.52705	0.26897	0.00013953	-0.059044	-3.063E-05	0.20993	0.0001089	518.7708691444807	25.119	0.41931	25.119	25.012	25.431	0					12	8	3	0	0	0	0.4287	1	8767	8767		53.089	5.4316	1	509460			43948	6249	29195	29313	44514	44514					0.010703731260491622
TSTEAKSFV	9	Unmodified	_TSTEAKSFV_					0	0	0			REV__nc|ENSG00000135541|Q8N157-2|AHI1	REV__nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.24725341796875	2	485.248015	968.481476	0.32448	0.00015745	-1.5315	-0.00074318	-1.2071	-0.00058572	485.24729645999224	21.029	0.16893	21.029	20.927	21.095	0					6	4	2	0	0	0	0.48389	1	6040	6040		34.173	1.3601	1	62545	+		43949	14810	29196	29314	44515	44515					-0.004025290646609392
TSTGSTGIVIV	11	Unmodified	_TSTGSTGIVIV_					0	0	0		tr|U7SYH7|U7SYH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00884PE=4SV=1	tr|U7SYH7|U7SYH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00884PE=4SV=1	tr|U7SYH7|U7SYH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00884PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7919311523438	2	517.790047	1033.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.736	1	16.736	16.236	17.236	0								0	0	0	0.45674	1	4029	4029		20.947	0.4651	1				43950	22875	29197	29315	44516	44516					0.05010002032213379
TSTIEQQLQ	9	Unmodified	_TSTIEQQLQ_					0	0	0		ENSG00000181817|ENST00000315732|LSM10;ENST00000476041.1_1_1:36859367-36863370:-|nuORF	ENSG00000181817|ENST00000315732|LSM10	ENSG00000181817|ENST00000315732|LSM10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2698974609375	2	524.269478	1046.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.557	1	25.557	25.057	26.057	0								0	0	0	0.23445	1	9086	9086		45.972	1.8554	1				43951	6866	29198	29316	44517	44517					0.0030024099276033667
TSTLVAFLQ	9	Unmodified	_TSTLVAFLQ_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2765197753906	2	490.276575	978.538597	-0.048089	-2.3577E-05	-0.46904	-0.00022996	-0.51712	-0.00025353	490.2760388590231	35.364	0.25956	35.364	35.257	35.517	0					21	13	3	0	0	0	0.39215	1	11590	11590		42.396	3.1433	1	177380			43952	7189	29199	29317	44518	44518					0.04846938211710494
TSTPLSSPVY	10	Unmodified	_TSTPLSSPVY_					0	0	0		ENSG00000107829|ENST00000331272|FBXW4;ENST00000470093.5_1_10:103371050-103384578:-|nuORF;nc|ENSG00000107829|P57775|FBXW4	ENSG00000107829|ENST00000331272|FBXW4	ENSG00000107829|ENST00000331272|FBXW4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2684326171875	2	526.268947	1050.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.145	1	38.145	37.645	38.645	0								0	0	0	0.35368	1	12871	12871		42.396	6.7778	1				43953	2497	29200	29318	44519	44519					0.00010026623863268469
TSVEKHLKD	9	Unmodified	_TSVEKHLKD_					0	0	0			REV__ENST00000463973.5_1_20:34206447-34206702:+|nuORF	REV__ENST00000463973.5_1_20:34206447-34206702:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7902221679688	2	528.787838	1055.56112	3.4591	0.0018291	1.0822	0.00057227	4.5413	0.0024014	528.7883625563171	31.743	0.46877	31.743	31.633	32.102	0					23	9	4	0	0	0	0.062676	1	11910	11910		90.777	14.003	1	1547000	+		43954	13087	29201	29319	44520	44520					0.03556537609347288
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF;ENST00000492740.5_1_2:203130664-203139913:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2711486816406	2	493.271293	984.528032	0.77682	0.00038318	-1.4211	-0.00070099	-0.64429	-0.00031781	493.27073805895134	38.76	0.35157	38.76	38.664	39.015	0					21	13	2	0	0	0	0.063823	1	14731	14731		90.37	40.928	1	409240			43955	1277	29202	29320	44521	44521					0.035149555572729696
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF;ENST00000492740.5_1_2:203130664-203139913:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.27130126953125	2	493.271293	984.528032	0.624	0.0003078	-2.1027	-0.0010372	-1.4787	-0.00072942	493.27096649653754	38.765	0.27775	38.765	38.65	38.928	0					22	10	3	0	0	0	0.037569	1	15203	15203		101.6	73.718	1	451310			43956	1277	29202	29320	44522	44522					0.035149555572729696
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF;ENST00000492740.5_1_2:203130664-203139913:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2718811035156	2	493.271293	984.528032	0.0028993	1.4301E-06	-0.25198	-0.0001243	-0.24908	-0.00012287	493.2712674429638	38.523	0.13021	38.523	38.44	38.571	0					10	6	2	0	0	0	0.47038	1	13772	13772		35.618	7.364	1	73774			43957	1277	29202	29320	44523	44523					0.035149555572729696
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF;ENST00000492740.5_1_2:203130664-203139913:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2708740234375	2	493.271293	984.528032	-0.61111	-0.00030144	-0.16702	-8.2387E-05	-0.77813	-0.00038383	493.2711558598	38.703	0.30962	38.703	38.594	38.903	0					13	6	3	0	0	0	0.012915	1	15225	15225		134.81	68.381	1	592910			43958	1277	29202	29320	44524	44524					0.035149555572729696
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF;ENST00000492740.5_1_2:203130664-203139913:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.27117919921875	2	493.271293	984.528032	0.86644	0.00042739	-2.2273	-0.0010987	-1.3609	-0.00067128	493.27075112566547	38.686	0.30928	38.686	38.577	38.886	0					12	6	2	0	0	0	0.021961	1	15240	15240		118.74	55.437	1	954950			43959	1277	29202	29320	44525	44525					0.035149555572729696
TSVKSYATREL	11	Unmodified	_TSVKSYATREL_					0	0	0			REV__KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant	REV__KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	627.837158203125	2	627.838059	1253.66157	0.80764	0.00050707	-0.65788	-0.00041304	0.14977	9.4028E-05	627.8375219121434	33.292	0.25582	33.292	33.178	33.434	0					30	10	4	0	0	0	0.65797	1	11130	11130		31.634	0.10446	1	387630	+		43960	20785	29203	29321	44526	44526					0.04488149872327085
TSVLAAER	8	Unmodified	_TSVLAAER_					0	0	0			REV__ENST00000335183.10_1_14:54863742-54863790:+|nuORF	REV__ENST00000335183.10_1_14:54863742-54863790:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	423.7373962402344	2	423.737617	845.460681	0.37595	0.00015931	-0.65078	-0.00027576	-0.27483	-0.00011646	423.73724271884487	32.995	0.23806	32.995	32.9	33.138	0					8	5	2	0	0	0	0.61938	1	12601	12601		45.952	0	1	126270	+		43961	18406	29204	29322	44527	44527					0.03176925346326698
TSVLLASGVSI	11	Unmodified	_TSVLLASGVSI_					0	0	0		ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.8082275390625	2	523.808239	1045.60193	0.032687	1.7122E-05	-0.032339	-1.694E-05	0.00034827	1.8243E-07	523.8083053996951	39.852	0.17695	39.852	39.78	39.956	0					9	6	2	0	0	0	0.58789	1	15713	15713		37.812	2.6595	1	82410			43962	7643	29205	29323	44528	44528					0.0809487892895504
TSVLVVQFV	9	Unmodified	_TSVLVVQFV_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;TPCN1|p.L349Sfs*26|1|0.08|ENSG00000186815|chr12:113277020-113277020|G/-|frameshift_variant;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.29486083984375	2	496.294768	990.574983	0.7265	0.00036056	-1.0957	-0.00054379	-0.3692	-0.00018323	496.29423141734776	36.163	0.12577	36.163	36.057	36.183	0					6	3	2	0	0	0	0.37197	1	13614	13614		44.117	3.3386	1	119410			43963	7162	29206	29324	44529	44529					0.07931815108429419
TSVRAEVQQ	9	Unmodified	_TSVRAEVQQ_					0	0	0			REV__ABI3|p.R84Q|1|0.15|ENSG00000108798|chr17:49216664-49216664|G/A|missense_variant	REV__ABI3|p.R84Q|1|0.15|ENSG00000108798|chr17:49216664-49216664|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.270263671875	2	509.269813	1016.52507	1.1648	0.00059318	-0.91735	-0.00046718	0.24741	0.000126	509.26943952592757	13.535	0.32261	13.535	13.33	13.653	0					14	7	2	0	0	0	0.44593	1	3315	3315		37.812	0.65241	1	251630	+		43964	12044	29207	29325	44530	44530					0.017470804324716482
TSVTSDSA	8	Unmodified	_TSVTSDSA_					0	0	0			REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.1744384765625	2	384.174515	766.334478	0.063532	2.4408E-05	-0.18043	-6.9315E-05	-0.11689	-4.4908E-05	384.17445158739775	14.451	0.12845	14.451	14.366	14.494	0					7	3	3	0	0	0	0.79719	1	3514	3514		18.324	0	1	313550	+		43965	18454	29208	29326	44531	44531					-0.05803625949624802
TSVTVPRHV	9	Unmodified	_TSVTVPRHV_					0	0	0			REV__ENST00000373703.4_1_1:32095783-32096005:-|nuORF	REV__ENST00000373703.4_1_1:32095783-32096005:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2836608886719	2	498.285266	994.555979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.734	1	33.734	33.234	34.234	0								0	0	0	0.29774	1	10995	10995		35.618	2.8059	1		+		43966	18686	29209	29327	44532	44532					0.05848278537371243
TSWRDGMAF	9	Unmodified	_TSWRDGMAF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7402954101562	2	535.739834	1069.46511	1.8188	0.00097442	-0.76903	-0.000412	1.0498	0.00056242	535.7394703882802	41.499	0.25043	41.499	41.411	41.661	0					18	10	2	0	0	0	0.22837	1	16317	16317		58.23	21.071	1	176100			43967	2899	29210	29328	44533	44533					-0.06683933502404216
TSWRDGMAF	9	Unmodified	_TSWRDGMAF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7400512695312	2	535.739834	1069.46511	1.9013	0.0010186	-1.1969	-0.00064125	0.70434	0.00037734	535.7391934563299	41.441	0.3353	41.441	41.313	41.648	0					17	8	3	0	0	0	0.19605	1	16478	16478		62.107	17.576	1	252000			43968	2899	29210	29328	44534	44534					-0.06683933502404216
TSWRVLIS	8	Unmodified	_TSWRVLIS_					0	0	0		RAD54L|p.R319W|1|0.33|ENSG00000085999|chr1:46267522-46267522|C/T|missense_variant	RAD54L|p.R319W|1|0.33|ENSG00000085999|chr1:46267522-46267522|C/T|missense_variant	RAD54L|p.R319W|1|0.33|ENSG00000085999|chr1:46267522-46267522|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2764587402344	2	481.276909	960.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.096	1	44.096	43.596	44.596	0								0	0	0	1.7419	1	17670	17670		31.955	0	1				43969	11995	29211	29329	44535	44535					0.05741777651417124
TSYHFSTI	8	Unmodified	_TSYHFSTI_					0	0	0		ENST00000370828.3_1_X:132436805-132436874:-|nuORF	ENST00000370828.3_1_X:132436805-132436874:-|nuORF	ENST00000370828.3_1_X:132436805-132436874:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.23187255859375	2	478.229625	954.444697	2.2487	0.0010754	0.58104	0.00027787	2.8297	0.0013533	478.2300655959729	45.125	0.27562	45.125	45.051	45.327	0					22	12	3	0	0	0	0.41952	1	18065	18065		68.485	24.368	1	330480			43970	8961	29212	29330	44536	44536					-0.03434780890563616
TSYKTEIQ	8	Unmodified	_TSYKTEIQ_					0	0	0			REV__ENSG00000157330|ENST00000614859|CFAP107	REV__ENSG00000157330|ENST00000614859|CFAP107	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.24786376953125	2	485.248015	968.481476	-0.5695	-0.00027635	-0.080054	-3.8846E-05	-0.64955	-0.00031519	485.2480293375361	21.15	0.31172	21.15	20.943	21.254	0					13	6	3	0	0	0	0.63077	1	6827	6827		44.117	1.7207	1	704970	+		43971	15654	29213	29331	44537	44537					-0.004025290646723079
TSYSSEFSK	9	Unmodified	_TSYSSEFSK_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2352905273438	2	518.235104	1034.45566	1.0515	0.00054494	-0.59103	-0.00030629	0.46051	0.00023865	518.234912736913	25.561	0.16068	25.561	25.459	25.62	0					5	3	2	0	0	0	0.11898	1	9098	9098		75.043	22.744	1	262650			43972	6897	29214	29332	44538	44538					-0.06019423306929639
TSYSSEFSK	9	Unmodified	_TSYSSEFSK_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2353515625	2	518.235104	1034.45566	0.25076	0.00012995	0.51763	0.00026826	0.76839	0.00039821	518.2354360392275	25.472	0.21845	25.472	25.364	25.582	0					9	4	3	0	0	0	0.078509	1	8936	8936		85.161	2.8558	1	338700			43973	6897	29214	29332	44539	44539					-0.06019423306929639
TSYVAPNGEL	10	Unmodified	_TSYVAPNGEL_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7598876953125	2	525.758746	1049.50294	-1.234	-0.00064876	2.4407	0.0012832	1.2068	0.00063447	525.7600020390225	19.525	0.39476	19.525	19.386	19.781	0					19	9	3	0	0	0	0.28036	1	5307	5307		69.628	3.8245	1	350370	+		43974	15879	29215	29333	44540	44540					-0.01983144035943951
TTAAPSPPR	9	Unmodified	_TTAAPSPPR_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.2430419921875	2	449.243067	896.47158	0.13133	5.9E-05	-0.68658	-0.00030844	-0.55525	-0.00024944	449.2427676301659	19.319	0.69177	19.319	18.816	19.508	0					21	17	2	0	0	0	0.087861	1	5804	5804		82.241	10.363	1	104580			43975	6655	29216	29334	44541	44541					0.019203277206202074
TTAAPSPPR	9	Unmodified	_TTAAPSPPR_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.24267578125	2	449.243067	896.47158	-0.094122	-4.2284E-05	-0.52074	-0.00023394	-0.61486	-0.00027622	449.2430566335251	19.289	0.68539	19.289	18.711	19.396	0					25	14	3	0	0	0	0.1424	1	6086	6086		69.628	5.4204	1	159320			43976	6655	29216	29334	44542	44542					0.019203277206202074
TTAAVGVLK	9	Unmodified	_TTAAVGVLK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion;ENST00000462800.1_1_7:77397938-77402638:+|nuORF;ENST00000468035.1_1_7:77394853-77402638:+|nuORF	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.26568603515625	2	430.26601	858.517468	0.21625	9.3045E-05	-0.79568	-0.00034235	-0.57943	-0.00024931	430.26566770742056	25.949	0.27459	25.949	25.756	26.031	0					8	4	3	0	0	0	0.0041499	1	8895	8895		161.9	13.855	1	136500			43977	7190	29217	29335	44543	44543					0.0825497290286421
TTAAVGVLK	9	Unmodified	_TTAAVGVLK_					0	0	0		PTPN12-RSBN1L|8|fusion;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion;ENST00000462800.1_1_7:77397938-77402638:+|nuORF;ENST00000468035.1_1_7:77394853-77402638:+|nuORF	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2659606933594	2	430.26601	858.517468	-0.5051	-0.00021733	0.24253	0.00010435	-0.26257	-0.00011298	430.2661027267888	25.943	0.29601	25.943	25.755	26.051	0					7	4	2	0	0	0	0.071197	1	9239	9239		87.754	0	1	289770			43978	7190	29217	29335	44544	44544					0.0825497290286421
TTAAVLQGK	9	Unmodified	_TTAAVLQGK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.7604675292969	2	444.761092	887.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.171	1	22.171	21.671	22.671	0								0	0	0	0.15451	1	7161	7161		58.782	10.866	1				43979	11514	29218	29336	44545	44545					0.05937784897491838
TTADFRTKK	9	Unmodified	_TTADFRTKK_					0	0	0		ENST00000598292.1_1_19:15511553-15512083:-|nuORF;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L	ENST00000598292.1_1_19:15511553-15512083:-|nuORF	ENST00000598292.1_1_19:15511553-15512083:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	356.5328674316406	3	356.532979	1066.57711	1.4365	0.00051217	-1.3485	-0.00048077	0.088056	3.1395E-05	356.53244096372947	15.187	0.1592	15.187	15.13	15.289	0					7	3	3	0	0	0	0.41113	1	4114	4114		40.778	6.6056	1	464560			43980	1045	29219	29337	44546	44546					0.04648243846236255
TTAEGMAKK	9	Unmodified	_TTAEGMAKK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7440490722656	2	468.744585	935.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.983	1	13.983	13.483	14.483	0								0	0	0	0.0066162	1	2815	2815		113.41	22.635	1				43981	7041	29220	29338	44547	44547					0.004298347831195315
TTAEGMAKK	9	Unmodified	_TTAEGMAKK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.74432373046875	2	468.744585	935.474617	-0.63811	-0.00029911	0.38818	0.00018196	-0.24993	-0.00011715	468.7446728867666	14.297	0.16619	14.297	14.212	14.378	0					9	4	3	0	0	0	0.034359	1	3473	3473		104.75	19.387	1	1144100			43982	7041	29220	29338	44548	44548					0.004298347831195315
TTAEGMAKK	9	Unmodified	_TTAEGMAKK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7448425292969	2	468.744585	935.474617	-1.0093	-0.00047309	0.41119	0.00019274	-0.59808	-0.00028035	468.744979500929	14.003	0.063515	14.003	13.962	14.026	0					6	3	2	0	0	0	0.098791	1	2961	2961		79.713	26.361	1	189170			43983	7041	29220	29338	44549	44549					0.004298347831195315
TTAEGMAKK	9	Unmodified	_TTAEGMAKK_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	468.7447204589844	2	468.744585	935.474617	-1.0285	-0.0004821	1.2239	0.0005737	0.19543	9.1606E-05	468.7452139723915	14.259	0.1668	14.259	14.15	14.317	0					5	3	2	0	0	0	0.0061615	1	3668	3668		153.04	64.393	1	1082700			43984	7041	29220	29338	44550	44550					0.004298347831195315
TTAKNVEVT	9	Unmodified	_TTAKNVEVT_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.760986328125	2	481.761289	961.508025	-0.10479	-5.0484E-05	0.044631	2.1502E-05	-0.06016	-2.8983E-05	481.7612231317791	22.179	0.16586	22.179	22.119	22.285	0					7	3	3	0	0	0	0.13267	1	7482	7482		71.877	9.7701	1	160700			43985	4934	29221	29339	44551	44551					0.025731598266588662
TTALTQNL	8	Unmodified	_TTALTQNL_					0	0	0			REV__nc|ENSG00000246774|Q6ZST2|COL25A1-DT	REV__nc|ENSG00000246774|Q6ZST2|COL25A1-DT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2371520996094	2	431.23745	860.460347	0.19242	8.2979E-05	-0.67761	-0.00029221	-0.48519	-0.00020923	431.23713038203806	20.825	0.15505	20.825	20.765	20.92	0					6	3	2	0	0	0	0.5676	1	6533	6533		53.351	0.41475	1	399760	+		43986	21228	29222	29340	44552	44552					0.024535056264767263
TTANTSRPLK	10	Unmodified	_TTANTSRPLK_					0	0	0		nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	nc|ENSG00000171346|P19012-2|KRT15	nc|ENSG00000171346|P19012-2|KRT15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.5413818359375	3	363.540134	1087.59857	-0.10131	-3.6829E-05	3.5784	0.0013009	3.4771	0.0012641	363.5414451901337	23.221	0.1941	23.221	23.162	23.356	0					8	4	3	0	0	0	0.536	1	7057	7057		41.427	2.1738	1	124200			43987	9888	29223	29341	44553	44553					0.05827628874953916
TTANVRIIK	9	Unmodified	_TTANVRIIK_					0	0	0		ENST00000483350.1_1_3:50036895-50096022:+|nuORF;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;RBM6|p.K834Nfs*27|4|0.24|ENSG00000004534|chr3:50062017-50062017|A/-|frameshift_variant;RBM6|p.K760Nfs*101|1|0.25|ENSG00000004534|chr3:50061143-50061143|A/-|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6	ENST00000483350.1_1_3:50036895-50096022:+|nuORF	ENST00000483350.1_1_3:50036895-50096022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3168029785156	2	508.316566	1014.61858	-0.57199	-0.00029075	0.93668	0.00047613	0.3647	0.00018538	508.3169698081654	21.934	0.13157	21.934	21.852	21.984	0					8	4	3	0	0	0	0.12834	1	6380	6380		56.721	17.468	1	142650			43988	941	29224	29342	44554	44554					0.1118542460557137
TTAPSLSGK	9	Unmodified	_TTAPSLSGK_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant;CTNNB1|p.L103Ffs*10|1|0.06|ENSG00000168036|chr3:41225020-41225021|-/TTATTTAAACTATTATACACTA|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.23773193359375	2	431.23745	860.460347	1.0398	0.00044838	-1.1181	-0.00048217	-0.078355	-3.379E-05	431.2369850519312	20.539	0.11469	20.539	20.47	20.585	0					5	3	2	0	0	0	0.25716	1	5506	5506		54.776	5.3348	1	71204			43989	6049	29225	29343	44555	44555					0.024535056264767263
TTAPSLSGK	9	Unmodified	_TTAPSLSGK_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant;CTNNB1|p.L103Ffs*10|1|0.06|ENSG00000168036|chr3:41225020-41225021|-/TTATTTAAACTATTATACACTA|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	431.2370910644531	2	431.23745	860.460347	-0.49141	-0.00021191	-0.31417	-0.00013548	-0.80558	-0.0003474	431.23722217730466	20.738	0.21736	20.738	20.679	20.896	0					6	4	2	0	0	0	0.22837	1	6777	6777		58.23	6.8945	1	637010			43990	6049	29225	29343	44556	44556					0.024535056264767263
TTAPSLSGK	9	Unmodified	_TTAPSLSGK_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant;CTNNB1|p.L103Ffs*10|1|0.06|ENSG00000168036|chr3:41225020-41225021|-/TTATTTAAACTATTATACACTA|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2371826171875	2	431.23745	860.460347	-0.46548	-0.00020073	-0.21837	-9.4168E-05	-0.68384	-0.0002949	431.23723124689	20.751	0.26611	20.751	20.544	20.811	0					10	5	3	0	0	0	0.19605	1	6653	6653		62.107	3.3255	1	711790			43991	6049	29225	29343	44557	44557					0.024535056264767263
TTAPVVSTR	9	Unmodified	_TTAPVVSTR_					0	0	0		ENSG00000170442|ENST00000423955|KRT86;CON__O43790	ENSG00000170442|ENST00000423955|KRT86	ENSG00000170442|ENST00000423955|KRT86	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2636413574219	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.768	1	20.768	20.268	21.268	0								0	0	0	0.27939	1	6781	6781		39.253	6.4404	1			+	43992	626	29226	29344	44558	44558					0.04540883409151775
TTAQLQVQK	9	Unmodified	_TTAQLQVQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7891540527344	2	508.790381	1015.56621	-0.10175	-5.1769E-05	-1.6034	-0.00081578	-1.7051	-0.00086755	508.78940607413665	21.064	0.11959	21.064	20.979	21.098	0					5	3	2	0	0	0	0.054723	1	5746	5746		98.629	8.2596	1	109770			43993	11514;11513	29227	29345	44559	44559					0.059048414719427456
TTAQLQVQK	9	Unmodified	_TTAQLQVQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.79083251953125	2	508.790381	1015.56621	-0.021742	-1.1062E-05	1.0732	0.00054603	1.0515	0.00053497	508.7906956213463	21.388	0.17654	21.388	21.298	21.474	0					11	4	3	0	0	0	0.021015	1	6794	6794		127.46	8.7186	1	676100			43994	11514;11513	29227	29345	44560	44560					0.059048414719427456
TTAQLQVQK	9	Unmodified	_TTAQLQVQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7900390625	2	508.790381	1015.56621	-0.54566	-0.00027763	0.89308	0.00045439	0.34742	0.00017676	508.7906381917454	21.099	0.16726	21.099	21	21.168	0					11	5	3	0	0	0	0.067603	1	6006	6006		93.143	7.9824	1	209050			43995	11514;11513	29227	29345	44561	44561					0.059048414719427456
TTAQLQVQK	9	Unmodified	_TTAQLQVQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7909851074219	2	508.790381	1015.56621	0.15147	7.7069E-05	0.051425	2.6164E-05	0.2029	0.00010323	508.7905382784758	21.16	0.15047	21.16	21.064	21.215	0					6	3	2	0	0	0	0.22823	1	6099	6099		60.118	14.146	1	125570			43996	11514;11513	29227	29345	44562	44562					0.059048414719427456
TTAQLQVQK	9	Unmodified	_TTAQLQVQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7904357910156	2	508.790381	1015.56621	1.329	0.0006762	-1.4944	-0.00076032	-0.16534	-8.4124E-05	508.7897777327774	21.28	0.21296	21.28	21.174	21.387	0					9	4	3	0	0	0	0.0051572	1	6917	6917		154.12	40.707	1	1175700			43997	11514;11513	29227	29345	44563	44563					0.059048414719427456
TTASFAATK	9	Unmodified	_TTASFAATK_					0	0	0		ENSG00000183864|ENST00000327492|TOB2;nc|ENSG00000183864|Q14106-2|TOB2	ENSG00000183864|ENST00000327492|TOB2	ENSG00000183864|ENST00000327492|TOB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.23712158203125	2	449.23745	896.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.741	1	20.741	20.241	21.241	0								0	0	0	0.15687	1	6485	6485		58.23	8.7884	1				43998	6990	29228	29346	44564	44564					0.0079750562646268
TTASPGPGPL	10	Unmodified	_TTASPGPGPL_					0	0	0			REV__ENST00000463438.5_1_3:14693292-14703332:+|nuORF	REV__ENST00000463438.5_1_3:14693292-14703332:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.246337890625	2	449.23745	896.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.702	1	20.702	20.202	21.202	0								0	0	0	0.28441	1	6466	6466		53.351	10.487	1		+		43999	19396	29229	29347	44565	44565					0.007975056264740488
TTASQTNIKK	10	Unmodified	_TTASQTNIKK_					0	0	0		NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.306396484375	2	546.306395	1090.59824	1.2061	0.00065888	-0.50874	-0.00027793	0.69733	0.00038096	546.306214713642	13.883	0.069098	13.883	13.826	13.895	0					5	3	2	0	0	0	0.65895	1	2780	2780		27.047	2.5281	1	64368			44000	7874	29230	29348	44566	44566					0.056562091550858895
TTASQTNIKK	10	Unmodified	_TTASQTNIKK_					0	0	0		NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3064575195312	2	546.306395	1090.59824	0.42585	0.00023264	0.22304	0.00012185	0.64889	0.00035449	546.3063239124531	14.18	0.1298	14.18	14.132	14.262	0					8	3	3	0	0	0	0.030421	1	3408	3408		117.81	30.115	1	753970			44001	7874	29230	29348	44567	44567					0.056562091550858895
TTASQTNIKK	10	Unmodified	_TTASQTNIKK_					0	0	0		NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3076171875	2	546.306395	1090.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.907	1	13.907	13.407	14.407	0								0	0	0	0.20542	1	2926	2926		63.534	13.998	1				44002	7874	29230	29348	44568	44568					0.056562091550858895
TTASQTNIKK	10	Unmodified	_TTASQTNIKK_					0	0	0		NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3067016601562	2	546.306395	1090.59824	0.33485	0.00018293	0.17158	9.3735E-05	0.50643	0.00027666	546.3064646692998	14.115	0.10869	14.115	14.058	14.167	0					6	2	3	0	0	0	0.0084313	1	3598	3598		150.36	62.607	1	689900			44003	7874	29230	29348	44569	44569					0.056562091550858895
TTATAKLPK	9	Unmodified	_TTATAKLPK_					0	0	0			REV__ABR|p.L352Wfs*29|2|0.56|ENSG00000159842|chr17:1067205-1067205|G/-|frameshift_variant	REV__ABR|p.L352Wfs*29|2|0.56|ENSG00000159842|chr17:1067205-1067205|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7842712402344	2	465.784567	929.554582	-0.1366	-6.3624E-05	-0.35233	-0.00016411	-0.48893	-0.00022773	465.7843666216105	21.12	0.3104	21.12	20.98	21.29	0					9	6	2	0	0	0	0.39215	1	6950	6950		42.396	0	1	157460	+		44004	12046	29231	29349	44570	44570					0.08698644448611503
TTATATPSK	9	Unmodified	_TTATATPSK_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.23486328125	2	439.234907	876.455261	-0.36726	-0.00016131	-0.11441	-5.0251E-05	-0.48167	-0.00021156	439.23479522335685	13.801	0.34854	13.801	13.608	13.957	0					17	7	3	0	0	0	0.10915	1	3389	3389		77.318	3.0625	1	585950			44005	3057;11390	29232	29350	44571	44571					0.012092017638678954
TTATFAATK	9	Unmodified	_TTATFAATK_					0	0	0		TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.2458801269531	2	456.245275	910.475997	0.64391	0.00029378	-0.63981	-0.00029191	0.0040925	1.8672E-06	456.2451355208465	20.748	0.12968	20.748	20.678	20.808	0					6	4	2	0	0	0	0.1424	1	5617	5617		69.628	20.186	1	37813			44006	4433	29233	29351	44572	44572					0.017177921435290955
TTATFAATK	9	Unmodified	_TTATFAATK_					0	0	0		TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.24542236328125	2	456.245275	910.475997	0.23879	0.00010895	-0.1376	-6.2782E-05	0.10119	4.6166E-05	456.2452290414915	21.072	0.14221	21.072	20.98	21.123	0					9	3	3	0	0	0	0.022525	1	6631	6631		117.81	46.515	1	353400			44007	4433	29233	29351	44573	44573					0.017177921435290955
TTATGLLGQ	9	Unmodified	_TTATGLLGQ_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.739990234375	2	431.23745	860.460347	3.2644	0.0014077	-2.5049	-0.0010802	0.75946	0.00032751	431.2360993916613	20.565	0.070351	20.565	20.503	20.573	0					4	2	2	0	0	0	0.19605	1	5760	5760		62.107	9.1707	1	71623			44008	5298	29234	29352	44574	44574					0.02453505626488095
TTATGVFSLK	10	Unmodified	_TTATGVFSLK_					0	0	0		nc|ENSG00000290184|Q9BZS1-2|FOXP3;nc|ENSG00000290184|Q9BZS1-4|FOXP3;ENSG00000049768|ENST00000376207|FOXP3;nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7879638671875	2	512.787307	1023.56006	0.54228	0.00027808	0.96687	0.0004958	1.5092	0.00077388	512.7877160205235	36.195	0.12215	36.195	36.148	36.271	0					5	3	2	0	0	0	0.4287	1	14080	14080		53.089	13.031	1	37669			44009	1241	29235	29353	44575	44575					0.0492232324043016
TTATGVFSLK	10	Unmodified	_TTATGVFSLK_					0	0	0		nc|ENSG00000290184|Q9BZS1-2|FOXP3;nc|ENSG00000290184|Q9BZS1-4|FOXP3;ENSG00000049768|ENST00000376207|FOXP3;nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7877807617188	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.16	1	36.16	35.66	36.66	0								0	0	0	0.30854	1	14026	14026		49.536	12.377	1				44010	1241	29235	29353	44576	44576					0.0492232324043016
TTATPTIMK	9	Unmodified	_TTATPTIMK_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A;ENST00000556069.5_1_14:55241706-55251269:+|nuORF	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.26275634765625	2	482.26261	962.510668	0.36678	0.00017689	-0.67329	-0.0003247	-0.30651	-0.00014782	482.2622168091271	25.545	0.22676	25.545	25.426	25.653	0					7	5	2	0	0	0	0.1424	1	8740	8740		69.628	14.851	1	92755			44011	1101	29236	29354	44577	44577					0.027912919599771158
TTAVQNVLI	9	Unmodified	_TTAVQNVLI_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.78167724609375	2	479.782025	957.549496	0.92181	0.00044227	-1.7396	-0.00083462	-0.81778	-0.00039236	479.7817487787114	35.684	0.91255	35.684	35.466	36.379	0					36	18	5	0	0	0	0.16002	1	13803	13803		66.429	5.4573	1	3120300			44012	7194	29237	29355	44578	44578					0.06902340586009359
TTCEQIVRK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))EQIVRK_	TTC(1)EQIVRK		TTC(75)EQIVRK		0	1	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.8012084960938	2	567.800423	1133.58629	1.1681	0.00066327	-0.68165	-0.00038704	0.48648	0.00027622	567.8003046553569	17.817	0.084297	17.817	17.757	17.841	0					8	2	4	0	0	0	0.11898	1	4324	4324		75.043	9.5779	1	99225			44013	3404	29238	29356	44579	44579	137				0.024842691402454875
TTCEQIVRK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))EQIVRK_	TTC(1)EQIVRK		TTC(48)EQIVRK		0	1	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.8692321777344	3	378.869374	1133.58629	0.2317	8.7784E-05	-0.99528	-0.00037708	-0.76358	-0.0002893	378.869003957134	18.064	0.21761	18.064	17.904	18.122	0					9	4	3	0	0	0	0.33044	1	5491	5491		47.657	16.128	1	442750			44014	3404	29238	29356	44580	44580	137				0.024842691402454875
TTCEQIVRK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))EQIVRK_	TTC(1)EQIVRK		TTC(150)EQIVRK		0	1	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.8009033203125	2	567.800423	1133.58629	3.47	0.0019702	-3.973	-0.0022559	-0.50307	-0.00028564	567.7979517243903	18.052	0.45426	18.052	17.851	18.305	0					14	9	3	0	0	0	0.0059092	1	5341	5341		154.12	43.998	1	1544100			44015	3404	29238	29356	44581	44581	137				0.024842691402454875
TTCGSSPCR	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))GSSPCR_	TTC(0.995)GSSPC(0.005)R		TTC(23)GSSPC(-23)R		0	1	0		ENST00000348956.6_1_14:103986846-103986924:-|nuORF	ENST00000348956.6_1_14:103986846-103986924:-|nuORF	ENST00000348956.6_1_14:103986846-103986924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.6995544433594	2	484.699851	967.38515	0.63692	0.00030872	-0.73797	-0.00035769	-0.10105	-4.8978E-05	484.69950789156985	14.657	0.25641	14.657	14.578	14.834	0					8	6	2	0	0	0	0.36892	1	3617	3617		44.377	8.7589	2	273730			44016	8769	29239	29357	44582	44582	376				-0.09984743167899524
TTCGSSPCR	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))GSSPCR_	TTC(0.999)GSSPC(0.001)R		TTC(30)GSSPC(-30)R		0	1	0		ENST00000348956.6_1_14:103986846-103986924:-|nuORF	ENST00000348956.6_1_14:103986846-103986924:-|nuORF	ENST00000348956.6_1_14:103986846-103986924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.6998596191406	2	484.699851	967.38515	-0.093521	-4.533E-05	-0.36784	-0.00017829	-0.46136	-0.00022362	484.6998883814036	14.655	0.20588	14.655	14.508	14.714	0					9	4	3	0	0	0	0.28897	1	3815	3815		51.193	10.415	2	219120			44017	8769	29239	29357	44583	44583	376				-0.09984743167899524
TTCKNHPY	8	Unmodified	_TTCKNHPY_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.22161865234375	2	482.221277	962.428001	-0.56093	-0.00027049	0.82475	0.00039771	0.26383	0.00012722	482.22172121175396	39.637	0.17667	39.637	39.527	39.703	0					11	6	2	0	0	0	0.76283	1	15573	15573		25.45	0	1	49141			44018	4294	29240	29358	44584	44584					-0.05471605048182937
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(88)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.8709716796875	3	366.870715	1097.59032	0.47596	0.00017462	-0.9261	-0.00033976	-0.45014	-0.00016514	366.87040950853617	15.173	0.20031	15.173	15.115	15.316	0					12	6	3	0	0	0	0.070005	1	3243	3243		88.177	28.059	1	651350			44019	6007	29241	29359	44585	44585	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(99)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.802490234375	2	549.802434	1097.59032	1.2738	0.00070033	-0.99207	-0.00054544	0.28172	0.00015489	549.8020965360703	15.165	0.22774	15.165	15.107	15.335	0					17	7	4	0	0	0	0.04067	1	3238	3238		98.582	25.703	1	1474000			44020	6007	29241	29359	44586	44586	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(99)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.87060546875	3	366.870715	1097.59032	0.7563	0.00027746	-1.2687	-0.00046544	-0.51239	-0.00018798	366.87036683890796	15.454	0.45509	15.454	15.369	15.824	0					24	11	5	0	0	0	0.04067	1	3990	3990		98.582	38.464	1	9128300			44021	6007	29241	29359	44587	44587	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(150)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8021850585938	2	549.802434	1097.59032	0.53428	0.00029375	-0.74358	-0.00040882	-0.20929	-0.00011507	549.8020220122241	15.447	0.33833	15.447	15.358	15.697	0					24	8	5	0	0	0	0.0067848	1	3995	3995		150.36	68.121	1	11912000			44022	6007	29241	29359	44588	44588	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(51)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	366.87103271484375	3	366.870715	1097.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.229	1	15.229	14.729	15.729	0								0	0	0	0.19847	1	3429	3429		51.193	24.5	1				44023	6007	29241	29359	44589	44589	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(88)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.8031005859375	2	549.802434	1097.59032	0.34547	0.00018994	2.165	0.0011903	2.5105	0.0013803	549.8034227778843	15.227	0.090187	15.227	15.156	15.246	0					5	3	2	0	0	0	0.07136	1	3423	3423		87.696	10.922	1	82290			44024	6007	29241	29359	44590	44590	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(53)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.8040161132812	2	549.802434	1097.59032	-0.3248	-0.00017858	0.5426	0.00029833	0.2178	0.00011975	549.8027643911416	15.208	0.16182	15.208	15.15	15.312	0					10	5	3	0	0	0	0.27249	1	3411	3411		52.937	13.684	1	438040			44025	6007	29241	29359	44591	44591	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(58)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.87054443359375	3	366.870715	1097.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.464	1	15.464	14.964	15.964	0								0	0	0	0.15687	1	4232	4232		58.23	19.476	1				44026	6007	29241	29359	44592	44592	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(140)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8026733398438	2	549.802434	1097.59032	1.7123	0.00094142	-0.2646	-0.00014548	1.4477	0.00079594	549.802025048765	15.43	0.16393	15.43	15.37	15.534	0					9	3	4	0	0	0	0.0097668	1	4229	4229		141.52	68.641	1	523110			44027	6007	29241	29359	44593	44593	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(130)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.8028564453125	2	549.802434	1097.59032	0.21564	0.00011856	0.305	0.00016769	0.52064	0.00028625	549.8027676076426	15.458	0.21065	15.458	15.356	15.567	0					12	4	4	0	0	0	0.014688	1	4239	4239		131.03	48.726	1	3143000			44028	6007	29241	29359	44594	44594	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(55)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.87091064453125	3	366.870715	1097.59032	0.36463	0.00013377	0.10244	3.7583E-05	0.46707	0.00017136	366.8707664612974	15.249	0.0805	15.249	15.213	15.293	0					4	2	2	0	0	0	0.25761	1	3383	3383		54.722	14.664	1	309310			44029	6007	29241	29359	44595	44595	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(71)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.870849609375	3	366.870715	1097.59032	-0.10795	-3.9602E-05	-0.085413	-3.1335E-05	-0.19336	-7.0937E-05	366.8707627183224	15.269	0.11039	15.269	15.205	15.316	0					9	3	4	0	0	0	0.13726	1	3378	3378		70.816	24.359	1	535500			44030	6007	29241	29359	44596	44596	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(110)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.8707275390625	3	366.870715	1097.59032	-0.17177	-6.3016E-05	-0.33208	-0.00012183	-0.50384	-0.00018484	366.87068868926366	15.422	0.29935	15.422	15.314	15.613	0					19	6	5	0	0	0	0.032383	1	4046	4046		106.68	62.306	1	1838100			44031	6007	29241	29359	44597	44597	252				0.045423586339666144
TTCSKVFKK	9	Carbamidomethyl (C)	_TTC(Carbamidomethyl (C))SKVFKK_	TTC(1)SKVFKK		TTC(64)SKVFKK		0	1	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.8707580566406	3	366.870715	1097.59032	0.97709	0.00035847	-1.5673	-0.00057501	-0.59024	-0.00021654	366.87023952528693	15.406	0.34993	15.406	15.297	15.647	0					14	7	4	0	0	0	0.18416	1	4042	4042		63.534	23.476	1	7951100			44032	6007	29241	29359	44598	44598	252				0.045423586339666144
TTDKETVLK	9	Unmodified	_TTDKETVLK_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7899169921875	2	517.790047	1033.56554	1.0131	0.00052458	-1.1858	-0.00061398	-0.17266	-8.9401E-05	517.7891262385648	17.913	0.11754	17.913	17.853	17.971	0					4	2	2	0	0	0	0.19952	1	5419	5419		61.691	22.885	1	320660			44033	6591	29242	29360	44599	44599					0.05010002032213379
TTDKETVLK	9	Unmodified	_TTDKETVLK_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7904663085938	2	517.790047	1033.56554	0.23396	0.00012114	-0.34753	-0.00017995	-0.11357	-5.8807E-05	517.7898361155907	17.891	0.11277	17.891	17.834	17.947	0					4	2	2	0	0	0	0.24334	1	5262	5262		56.434	13.959	1	176200			44034	6591	29242	29360	44600	44600					0.05010002032213379
TTDMMTNLVD	10	Unmodified	_TTDMMTNLVD_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.7504272460938	2	570.749207	1139.48386	-1.3742	-0.00078434	3.0507	0.0017412	1.6765	0.00095684	570.7510540733566	16.998	0.21103	16.998	16.917	17.128	0					11	6	3	0	0	0	0.64162	1	4138	4138		29.17	3.596	1	219560	+		44035	14955	29243	29361	44601	44601					-0.08030184713538802
TTDRPTIV	8	Unmodified	_TTDRPTIV_					0	0	0			REV__nc|ENSG00000017260|P98194-4|ATP2C1	REV__nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7503967285156	2	451.750724	901.486896	0.23761	0.00010734	-0.61188	-0.00027642	-0.37427	-0.00016908	451.75054866081587	26.683	0.49651	26.683	26.379	26.875	0					21	11	3	0	0	0	0.61938	1	9188	9188		45.952	3.0877	1	546700	+		44036	12928	29244	29362	44602	44602					0.032211945178119095
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.8045043945312	2	576.80402	1151.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.791	1	17.791	17.291	18.291	0								0	0	0	0.0053097	1	5083	5083		88.177	22.374	1				44037	4886	29245	29363	44603	44603					0.02375325012326357
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	384.8721008300781	3	384.871772	1151.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.546	1	17.546	17.046	18.046	0								0	0	0	0.241	1	4416	4416		45.022	9.844	1				44038	4886	29245	29363	44604	44604					0.02375325012326357
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.8041381835938	2	576.80402	1151.59349	1.7785	0.0010259	-1.8363	-0.0010592	-0.05776	-3.3316E-05	576.8032058018593	17.794	0.37111	17.794	17.684	18.055	0					21	7	4	0	0	0	0.024312	1	5357	5357		109.48	43.675	1	1855700			44039	4886	29245	29363	44605	44605					0.02375325012326357
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.8046875	2	576.80402	1151.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.807	1	17.807	17.307	18.307	0								0	0	0	0.29421	1	5354	5354		36.447	6.129	1				44040	4886	29245	29363	44606	44606					0.02375325012326357
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	384.8714904785156	3	384.871772	1151.59349	-0.14341	-5.5193E-05	0.14644	5.6361E-05	0.003037	1.1689E-06	384.8717991174186	17.601	0.12255	17.601	17.533	17.655	0					6	3	2	0	0	0	0.44593	1	4416	4416		37.812	5.061	1	133790			44041	4886	29245	29363	44607	44607					0.02375325012326357
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.8716735839844	3	384.871772	1151.59349	0.57618	0.00022175	-0.63764	-0.00024541	-0.061463	-2.3655E-05	384.8714865702376	17.774	0.21726	17.774	17.666	17.883	0					13	4	4	0	0	0	0.34452	1	5203	5203		46.457	14.823	1	1002500			44042	4886	29245	29363	44608	44608					0.02375325012326357
TTDRYVQQK	9	Unmodified	_TTDRYVQQK_					0	0	0		MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant;MTA1|p.T578Pfs*18|1|0.07|ENSG00000182979|chr14:105466528-105466528|C/-|frameshift_variant;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENST00000472767.5_1_2:42922919-42924972:+|nuORF;ENST00000475383.5_1_2:42922919-42935079:+|nuORF;nc|ENSG00000182979|Q13330-2|MTA1;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant	MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	570.298095703125	2	569.796195	1137.57784	0.10261	5.8466E-05	1.8933	0.0010788	1.9959	0.0011372	569.7972662842157	15.673	0.12125	15.673	15.604	15.725	0					8	5	2	0	0	0	0.47473	1	3615	3615		35.152	2.3396	1	106880			44043	6931	29246	29364	44609	44609					0.01455038495282679
TTDRYVQQK	9	Unmodified	_TTDRYVQQK_					0	0	0		MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant;MTA1|p.T578Pfs*18|1|0.07|ENSG00000182979|chr14:105466528-105466528|C/-|frameshift_variant;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENST00000472767.5_1_2:42922919-42924972:+|nuORF;ENST00000475383.5_1_2:42922919-42935079:+|nuORF;nc|ENSG00000182979|Q13330-2|MTA1;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant	MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.79638671875	2	569.796195	1137.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.899	1	15.899	15.399	16.399	0								0	0	0	0.00016232	1	4293	4293		132.76	45.061	1				44044	6931	29246	29364	44610	44610					0.01455038495282679
TTDSGPYFEK	10	Unmodified	_TTDSGPYFEK_					0	0	0		TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.761962890625	2	572.761486	1143.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.932	1	26.932	26.432	27.432	0								0	0	0	0.3598	1	8744	8744		41.427	8.6142	1				44045	2012;11458	29247	29365	44611	44611					-0.057594652441366634
TTDTSYAFVT	10	Unmodified	_TTDTSYAFVT_					0	0	0			REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2554931640625	2	553.256037	1104.49752	1.8193	0.0010065	-2.1244	-0.0011753	-0.30514	-0.00016882	553.2549047959125	39.551	0.36615	39.551	39.469	39.835	0					18	8	3	0	0	0	0.54197	1	15658	15658		40.778	7.2626	1	198480	+		44046	21779	29248	29366	44612	44612					-0.050548676184234864
TTDVNGKTL	9	Unmodified	_TTDVNGKTL_					0	0	0		ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13;nc|ENSG00000140945|P55290-5|CDH13	ENSG00000140945|ENST00000567109|CDH13	ENSG00000140945|ENST00000567109|CDH13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.75311279296875	2	474.753464	947.492375	-0.010985	-5.2153E-06	-0.352	-0.00016711	-0.36299	-0.00017233	474.753167057902	37.249	0.22731	37.249	37.14	37.367	0					20	12	2	0	0	0	0.48389	1	12191	12191		34.173	3.6689	1	84010			44047	4414	29249	29367	44613	44613					0.01652873309626557
TTDVQKKK	8	Unmodified	_TTDVQKKK_					0	0	0		RIPK4|p.P522Rfs*90|1|0.29|ENSG00000183421|chr21:41741772-41741772|G/-|frameshift_variant;ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	RIPK4|p.P522Rfs*90|1|0.29|ENSG00000183421|chr21:41741772-41741772|G/-|frameshift_variant	RIPK4|p.P522Rfs*90|1|0.29|ENSG00000183421|chr21:41741772-41741772|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.27880859375	2	474.279649	946.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.181	1	14.181	13.681	14.681	0								0	0	0	1.7419	1	3025	3025		53.351	3.9099	1				44048	6957	29250	29368	44614	44614					0.06933456443232444
TTEGRNALIHK	11	Unmodified	_TTEGRNALIHK_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.89837646484375	3	413.898321	1238.67313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.644	1	17.644	17.144	18.144	0								0	0	0	0.18035	1	5015	5015		102.06	50.534	1				44049	4025	29251	29369	44615	44615					0.06334391686323215
TTEGRNALIHK	11	Unmodified	_TTEGRNALIHK_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.898193359375	3	413.898321	1238.67313	1.033	0.00042755	-1.1734	-0.00048565	-0.14037	-5.8099E-05	413.89781006885204	17.592	0.1674	17.592	17.534	17.701	0					8	3	3	0	0	0	0.51875	1	5263	5263		60.167	30.028	1	1017600			44050	4025	29251	29369	44616	44616					0.06334391686323215
TTEGRNALIHK	11	Unmodified	_TTEGRNALIHK_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.8985900878906	3	413.898321	1238.67313	0.097009	4.0152E-05	0.41273	0.00017083	0.50974	0.00021098	413.89844303898707	17.395	0.11246	17.395	17.348	17.461	0					5	3	2	0	0	0	0.72154	1	4336	4336		42.338	19.758	1	69254			44051	4025	29251	29369	44617	44617					0.06334391686323215
TTEGRNALIHK	11	Unmodified	_TTEGRNALIHK_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.8984069824219	3	413.898321	1238.67313	0.97457	0.00040337	-0.76705	-0.00031748	0.20752	8.5892E-05	413.8979795805171	17.572	0.27025	17.572	17.464	17.734	0					11	5	3	0	0	0	0.40479	1	5104	5104		77.533	42.381	1	2004800			44052	4025	29251	29369	44618	44618					0.06334391686323215
TTEPLPEK	8	Unmodified	_TTEPLPEK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;ENST00000520877.5_1_8:80950353-80963533:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.74542236328125	2	457.745108	913.475663	-0.15303	-7.005E-05	-0.33644	-0.00015401	-0.48948	-0.00022406	457.74502775782327	21.333	0.36313	21.333	21.129	21.492	0					14	7	4	0	0	0	0.29286	1	7045	7045		84.916	16.129	1	1260500			44053	1564	29252	29370	44619	44619					0.015463724236610688
TTEPLPEK	8	Unmodified	_TTEPLPEK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;ENST00000520877.5_1_8:80950353-80963533:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.744873046875	2	457.745108	913.475663	0.01817	8.3171E-06	-1.0798	-0.00049427	-1.0616	-0.00048595	457.7447368326351	21.177	0.11182	21.177	21.12	21.232	0					4	2	2	0	0	0	0.41701	1	6103	6103		68.787	2.9837	1	97206			44054	1564	29252	29370	44620	44620					0.015463724236610688
TTEPLPEK	8	Unmodified	_TTEPLPEK_					0	0	0		ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;ENST00000520877.5_1_8:80950353-80963533:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	ENST00000521354.5_1_8:80950353-81083761:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7449951171875	2	457.745108	913.475663	-0.43704	-0.00020005	0.2216	0.00010144	-0.21543	-9.8613E-05	457.7451947599485	21.347	0.21611	21.347	21.238	21.454	0					7	4	2	0	0	0	0.24622	1	6923	6923		108.09	22.728	1	947180			44055	1564	29252	29370	44621	44621					0.015463724236610688
TTEQALKI	8	Unmodified	_TTEQALKI_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2606201171875	2	452.260925	902.507297	-0.32888	-0.00014874	-0.46545	-0.0002105	-0.79433	-0.00035924	452.2606970384796	30.106	0.19954	30.106	29.993	30.193	0					16	7	3	0	0	0	0.25102	1	9543	9543		99.375	1.9023	1	322990			44056	11644	29253	29371	44622	44622					0.052143651776077604
TTEWRGGL	8	Unmodified	_TTEWRGGL_					0	0	0			REV__ENST00000381813.4_1_2:10198012-10198201:-|nuORF	REV__ENST00000381813.4_1_2:10198012-10198201:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2366638183594	2	460.235242	918.45593	0.8203	0.00037753	1.9787	0.00091066	2.799	0.0012882	460.236269738474	25.155	0.40603	25.155	25.06	25.466	0					21	9	3	0	0	0	0.28158	1	8568	8568		88.643	3.7273	1	4587900	+		44057	18788	29254	29372	44623	44623					-0.006559587964147795
TTEYTKRI	8	Unmodified	_TTEYTKRI_					0	0	0		LRRTM2|p.F436Lfs*5|1|0.16|ENSG00000146006|chr5:138873253-138873253|A/-|frameshift_variant;ENSG00000146006|ENST00000274711|LRRTM2	LRRTM2|p.F436Lfs*5|1|0.16|ENSG00000146006|chr5:138873253-138873253|A/-|frameshift_variant	LRRTM2|p.F436Lfs*5|1|0.16|ENSG00000146006|chr5:138873253-138873253|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.853759765625	3	337.85383	1010.53966	-0.017872	-6.0383E-06	0.11584	3.9139E-05	0.097972	3.31E-05	337.85386179943754	20.701	0.16784	20.701	20.591	20.759	0					6	3	2	0	0	0	0.8006	1	6629	6629		16.473	0	1	162330			44058	4706	29255	29373	44624	44624					0.034811525806162535
TTFELSSRK	9	Unmodified	_TTFELSSRK_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant;FRYL|p.L330*|1|0.33|ENSG00000075539|chr4:48602066-48602066|A/-|frameshift_variant;FRYL|p.L330Ffs*3|1|0.35|ENSG00000075539|chr4:48602065-48602066|-/A|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7880859375	2	534.787838	1067.56112	0.16597	8.8757E-05	0.41285	0.00022079	0.57882	0.00030954	534.7879402697405	23.218	0.32183	23.218	23.08	23.401	0					9	7	2	0	0	0	0.085655	1	7682	7682		82.75	18.543	1	1532400			44059	1542	29256	29374	44625	44625					0.030045376093539744
TTFELSSRK	9	Unmodified	_TTFELSSRK_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant;FRYL|p.L330*|1|0.33|ENSG00000075539|chr4:48602066-48602066|A/-|frameshift_variant;FRYL|p.L330Ffs*3|1|0.35|ENSG00000075539|chr4:48602065-48602066|-/A|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7880249023438	2	534.787838	1067.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.206	1	23.206	22.706	23.706	0								0	0	0	0.16453	1	7963	7963		56.434	6.4093	1				44060	1542	29256	29374	44626	44626					0.030045376093539744
TTFLLPGQK	9	Unmodified	_TTFLLPGQK_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.79327392578125	2	502.792392	1003.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.421	1	36.421	35.921	36.921	0								0	0	0	0.11184	1	11946	11946		68.787	8.4929	1				44061	1533	29257	29375	44627	44627					0.06858930965665877
TTFLLPGQK	9	Unmodified	_TTFLLPGQK_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7922058105469	2	502.792392	1003.57023	0.72623	0.00036514	-0.75401	-0.00037911	-0.027783	-1.3969E-05	502.792040222002	36.699	0.28002	36.699	36.595	36.875	0					17	7	3	0	0	0	0.13267	1	13845	13845		71.877	27.761	1	376860			44062	1533	29257	29375	44628	44628					0.06858930965665877
TTFLLPGQK	9	Unmodified	_TTFLLPGQK_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7922058105469	2	502.792392	1003.57023	-0.8947	-0.00044985	1.774	0.00089196	0.87931	0.00044211	502.79283854375365	36.475	0.21645	36.475	36.36	36.576	0					29	12	4	0	0	0	0.22377	1	12354	12354		58.782	7.4465	1	141900			44063	1533	29257	29375	44629	44629					0.06858930965665877
TTFLLPGQK	9	Unmodified	_TTFLLPGQK_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.79217529296875	2	502.792392	1003.57023	0.98754	0.00049653	-0.78049	-0.00039242	0.20705	0.0001041	502.79175644689207	36.679	0.27487	36.679	36.564	36.839	0					20	8	3	0	0	0	0.25716	1	14295	14295		54.776	17.617	1	497320			44064	1533	29257	29375	44630	44630					0.06858930965665877
TTFLLPGQK	9	Unmodified	_TTFLLPGQK_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7919616699219	2	502.792392	1003.57023	-2.0654	-0.0010385	2.3392	0.0011762	0.27387	0.0001377	502.7935107554583	36.455	0.21978	36.455	36.361	36.581	0					14	10	2	0	0	0	0.39215	1	13049	13049		42.396	1.618	1	83781			44065	1533	29257	29375	44631	44631					0.06858930965665877
TTFQTKIE	8	Unmodified	_TTFQTKIE_					0	0	0			REV__nc|ENSG00000140153|Q8TBZ3-8|WDR20	REV__nc|ENSG00000140153|Q8TBZ3-8|WDR20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.259033203125	2	484.258382	966.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.577	1	27.577	27.077	28.077	0								0	0	0	1.7419	1	9040	9040		40.778	1.5253	1		+		44066	15063	29258	29376	44632	44632					0.017620613150029385
TTFSPSISK	9	Unmodified	_TTFSPSISK_					0	0	0		ENST00000483205.1_1_3:47551669-47552697:-|nuORF;ENST00000461208.5_1_3:47545925-47552697:-|nuORF	ENST00000483205.1_1_3:47551669-47552697:-|nuORF	ENST00000483205.1_1_3:47551669-47552697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2586364746094	2	484.258382	966.502212	-0.58435	-0.00028298	0.96561	0.0004676	0.38125	0.00018463	484.25891688460314	27.716	0.466	27.716	27.56	28.026	0					16	9	3	0	0	0	0.28897	1	9945	9945		51.193	1.7511	1	324080			44067	9729	29259	29377	44633	44633					0.017620613150029385
TTFSSAFCR	9	Carbamidomethyl (C)	_TTFSSAFC(Carbamidomethyl (C))R_	TTFSSAFC(1)R		TTFSSAFC(44)R		0	1	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7454833984375	2	538.745116	1075.47568	2.0234	0.0010901	0.5775	0.00031113	2.6009	0.0014012	538.7455131038569	33.343	0.37239	33.343	33.22	33.592	0					12	9	2	0	0	0	0.36892	1	12331	12331		44.377	14.059	1	223070			44068	5663	29260	29378	44634	44634	235				-0.05903950847982742
TTFSSAFCR	9	Carbamidomethyl (C)	_TTFSSAFC(Carbamidomethyl (C))R_	TTFSSAFC(1)R		TTFSSAFC(65)R		0	1	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.7465209960938	2	538.745116	1075.47568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.282	1	33.282	32.782	33.782	0								0	0	0	0.12601	1	12636	12636		65.465	22.601	1				44069	5663	29260	29378	44635	44635	235				-0.05903950847982742
TTFTALTEK	9	Unmodified	_TTFTALTEK_					0	0	0		nc|ENSG00000113578|P05230-2|FGF1;ENSG00000113578|ENST00000337706|FGF1	nc|ENSG00000113578|P05230-2|FGF1	nc|ENSG00000113578|P05230-2|FGF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2712707519531	2	506.27149	1010.52843	0.83918	0.00042486	0.57781	0.00029253	1.417	0.00071738	506.271213099298	31.374	0.29265	31.374	31.253	31.545	0					18	7	4	0	0	0	0.16806	1	11425	11425		65.465	9.9612	1	282550			44070	2810	29261	29379	44636	44636					0.02358330486470095
TTFTALTEK	9	Unmodified	_TTFTALTEK_					0	0	0		nc|ENSG00000113578|P05230-2|FGF1;ENSG00000113578|ENST00000337706|FGF1	nc|ENSG00000113578|P05230-2|FGF1	nc|ENSG00000113578|P05230-2|FGF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2718200683594	2	506.27149	1010.52843	-0.23859	-0.00012079	0.29205	0.00014786	0.053461	2.7066E-05	506.2721096725781	31.338	0.16183	31.338	31.275	31.437	0					8	3	3	0	0	0	0.098791	1	11711	11711		79.713	20.931	1	210310			44071	2810	29261	29379	44637	44637					0.02358330486470095
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.3113403320312	2	526.310949	1050.60735	0.62414	0.00032849	-0.0060096	-3.1629E-06	0.61813	0.00032533	526.3109686214777	23.391	0.26013	23.391	23.286	23.546	0					13	8	3	0	0	0	0.0025054	1	6759	6759		171.53	114.81	1	353630			44072	6476	29262	29380	44638	44638					0.08406602511422534
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.2098388671875	3	351.209725	1050.60735	0.70207	0.00024657	-0.55583	-0.00019521	0.14623	5.1358E-05	351.2095398538059	23.696	0.24165	23.696	23.604	23.846	0					13	5	3	0	0	0	0.098791	1	7891	7891		85.862	48.354	1	1343800			44073	6476	29262	29380	44639	44639					0.08406602511422534
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.3111572265625	2	526.310949	1050.60735	0.10038	5.2832E-05	0.48304	0.00025423	0.58342	0.00030706	526.311149181217	23.686	0.2397	23.686	23.592	23.832	0					16	5	4	0	0	0	0.00324	1	7883	7883		167.23	103.92	1	2444400			44074	6476	29262	29380	44640	44640					0.08406602511422534
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.310546875	2	526.310949	1050.60735	0.44983	0.00023675	0.041259	2.1715E-05	0.49109	0.00025847	526.3109389187154	23.428	0.15382	23.428	23.368	23.522	0					12	5	3	0	0	0	0.07136	1	7033	7033		87.696	48.444	1	305290			44075	6476	29262	29380	44641	44641					0.08406602511422534
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.3109741210938	2	526.310949	1050.60735	0.47932	0.00025227	0.24893	0.00013101	0.72824	0.00038328	526.3106060028765	23.44	0.10007	23.44	23.385	23.485	0					6	3	2	0	0	0	0.27123	1	7039	7039		53.089	23.939	1	72896			44076	6476	29262	29380	44642	44642					0.08406602511422534
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.3111572265625	2	526.310949	1050.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.676	1	23.676	23.176	24.176	0								0	0	0	0.024296	1	8189	8189		98.582	32.153	1				44077	6476	29262	29380	44643	44643					0.08406602511422534
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.310791015625	2	526.310949	1050.60735	0.22604	0.00011896	0.056411	2.969E-05	0.28245	0.00014865	526.3109254118992	23.637	0.16689	23.637	23.578	23.745	0					5	3	2	0	0	0	0.0061615	1	8182	8182		153.04	84.249	1	609480			44078	6476	29262	29380	44644	44644					0.08406602511422534
TTFTKIVNK	9	Unmodified	_TTFTKIVNK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.3113403320312	2	526.310949	1050.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.635	1	23.635	23.135	24.135	0								0	0	0	0.013195	1	8040	8040		163.15	66.961	1				44079	6476	29262	29380	44645	44645					0.08406602511422534
TTGADPKVFQK	11	Unmodified	_TTGADPKVFQK_					0	0	0			REV__ENST00000474733.5_1_7:76911883-76916812:+|nuORF	REV__ENST00000474733.5_1_7:76911883-76916812:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	397.8822937011719	3	397.883789	1190.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.335	1	17.335	16.835	17.835	0								0	0	0	0.45344	1	4872	4872		25.126	0	1		+		44080	19521	29263	29381	44646	44646					0.041847821891678905
TTGAVLGQK	9	Unmodified	_TTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;chr3:58640177-58645509|101|32.06|0.87|5.2|-|2|FAM3D,FAM3D|2	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.7527770996094	2	437.753267	873.491981	0.2509	0.00010983	-0.25919	-0.00011346	-0.0082923	-3.63E-06	437.75314908316125	19.716	0.20093	19.716	19.636	19.837	0					12	6	3	0	0	0	0.055856	1	5143	5143		93.195	0	1	234840			44081	7581	29264	29382	44647	44647					0.050174983804254225
TTGAVLGQK	9	Unmodified	_TTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;chr3:58640177-58645509|101|32.06|0.87|5.2|-|2|FAM3D,FAM3D|2	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7531433105469	2	437.753267	873.491981	0.61205	0.00026793	-0.68483	-0.00029979	-0.072779	-3.1859E-05	437.7529829502423	20.07	0.38475	20.07	19.971	20.356	0					21	8	4	0	0	0	0.023928	1	6153	6153		115.49	16.865	1	4040500			44082	7581	29264	29382	44648	44648					0.050174983804254225
TTGAVLGQK	9	Unmodified	_TTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;chr3:58640177-58645509|101|32.06|0.87|5.2|-|2|FAM3D,FAM3D|2	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.75323486328125	2	437.753267	873.491981	-0.94214	-0.00041243	0.35538	0.00015557	-0.58676	-0.00025686	437.7533865383305	19.752	0.16657	19.752	19.682	19.849	0					12	6	2	0	0	0	0.019882	1	5399	5399		122.18	34.48	1	497960			44083	7581	29264	29382	44649	44649					0.050174983804254225
TTGAVLGQK	9	Unmodified	_TTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;chr3:58640177-58645509|101|32.06|0.87|5.2|-|2|FAM3D,FAM3D|2	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7528381347656	2	437.753267	873.491981	-0.40034	-0.00017525	-0.51256	-0.00022437	-0.9129	-0.00039962	437.7530349666195	19.937	0.21973	19.937	19.826	20.045	0					8	4	3	0	0	0	0.023074	1	6397	6397		116.9	0	1	205660			44084	7581	29264	29382	44650	44650					0.050174983804254225
TTGAVLGQK	9	Unmodified	_TTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;chr3:58640177-58645509|101|32.06|0.87|5.2|-|2|FAM3D,FAM3D|2	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7533264160156	2	437.753267	873.491981	0.29618	0.00012965	0.05002	2.1896E-05	0.3462	0.00015155	437.7532077852565	19.802	0.18982	19.802	19.716	19.906	0					8	4	2	0	0	0	0.019882	1	5438	5438		122.18	31.806	1	157250			44085	7581	29264	29382	44651	44651					0.050174983804254225
TTGAVLGQK	9	Unmodified	_TTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;chr3:58640177-58645509|101|32.06|0.87|5.2|-|2|FAM3D,FAM3D|2	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7528991699219	2	437.753267	873.491981	-0.62134	-0.00027199	0.029764	1.3029E-05	-0.59157	-0.00025896	437.7533256826607	19.785	0.1856	19.785	19.703	19.889	0					11	4	3	0	0	0	0.023074	1	5451	5451		116.9	0	1	488320			44086	7581	29264	29382	44652	44652					0.050174983804254225
TTGAVLGQK	9	Unmodified	_TTGAVLGQK_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D;FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;chr3:58640177-58645509|101|32.06|0.87|5.2|-|2|FAM3D,FAM3D|2	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7530517578125	2	437.753267	873.491981	-0.5667	-0.00024807	0.23725	0.00010386	-0.32944	-0.00014421	437.75334663265585	19.952	0.36745	19.952	19.842	20.209	0					13	7	2	0	0	0	0.0025305	1	6266	6266		171.38	14.176	1	2690400			44087	7581	29264	29382	44653	44653					0.050174983804254225
TTGAVSGSFVR	11	Unmodified	_TTGAVSGSFVR_					0	0	0			REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	361.1925354003906	3	361.192734	1080.55637	0.11284	4.0757E-05	-0.43961	-0.00015878	-0.32677	-0.00011803	361.1925246571447	16.906	0.16079	16.906	16.77	16.93	0					13	7	3	0	0	0	0.57554	1	3923	3923		38.714	15.191	1	119130	+		44088	19558	29265	29383	44654	44654					0.019316534665676954
TTGAVSGSFVR	11	Unmodified	_TTGAVSGSFVR_					0	0	0			REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.1927795410156	3	361.192734	1080.55637	0.48106	0.00017375	-0.47845	-0.00017281	0.0026051	9.4093E-07	361.1926019104424	17.181	0.25684	17.181	17.045	17.302	0					17	6	4	0	0	0	0.41029	1	4790	4790		50.791	15.613	1	1162100	+		44089	19558	29265	29383	44655	44655					0.019316534665676954
TTGAVSGSFVR	11	Unmodified	_TTGAVSGSFVR_					0	0	0			REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.1931457519531	3	361.192734	1080.55637	-2.0446	-0.0007385	2.4881	0.00089867	0.44347	0.00016018	361.19366895328824	16.963	0.15757	16.963	16.873	17.031	0					7	4	2	0	0	0	0.63225	1	4137	4137		34.087	7.3936	1	90961	+		44090	19558	29265	29383	44656	44656					0.019316534665676954
TTGEPATPK	9	Unmodified	_TTGEPATPK_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;MSL3|p.P440Qfs*22|1|0.32|ENSG00000005302|chrX:11772188-11772188|C/-|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.234619140625	2	451.234907	900.455261	0.65281	0.00029457	-1.0848	-0.00048951	-0.43202	-0.00019494	451.23443241121635	16.94	0.49384	16.94	16.662	17.156	0					24	12	3	0	0	0	0.1424	1	4666	4666		69.628	18.292	1	634060			44091	959	29266	29384	44657	44657					0.001052017638585312
TTGEPATPK	9	Unmodified	_TTGEPATPK_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;MSL3|p.P440Qfs*22|1|0.32|ENSG00000005302|chrX:11772188-11772188|C/-|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2350769042969	2	451.234907	900.455261	-0.1078	-4.8645E-05	-0.52379	-0.00023635	-0.6316	-0.000285	451.2346207279014	16.87	0.50114	16.87	16.58	17.081	0					25	10	4	0	0	0	0.19605	1	4832	4832		62.107	10.772	1	1080200			44092	959	29266	29384	44658	44658					0.001052017638585312
TTGEPATPK	9	Unmodified	_TTGEPATPK_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;MSL3|p.P440Qfs*22|1|0.32|ENSG00000005302|chrX:11772188-11772188|C/-|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2350769042969	2	451.234907	900.455261	0.44201	0.00019945	-0.81978	-0.00036991	-0.37777	-0.00017046	451.23449343769107	16.713	0.30297	16.713	16.491	16.794	0					19	9	3	0	0	0	0.056004	1	4002	4002		93.143	34.361	1	163750			44093	959	29266	29384	44659	44659					0.001052017638585312
TTGEPATPK	9	Unmodified	_TTGEPATPK_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;MSL3|p.P440Qfs*22|1|0.32|ENSG00000005302|chrX:11772188-11772188|C/-|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.2347412109375	2	451.234907	900.455261	-0.40622	-0.0001833	0.025703	1.1598E-05	-0.38051	-0.0001717	451.23485708453967	16.864	0.50716	16.864	16.6	17.107	0					30	10	4	0	0	0	0.10915	1	4695	4695		77.318	3.0625	1	1479000			44094	959	29266	29384	44660	44660					0.001052017638585312
TTGHGSVGQE	10	Unmodified	_TTGHGSVGQE_					0	0	0		nc|ENSG00000185278|Q5TC79-3|ZBTB37;nc|ENSG00000185278|Q5TC79-2|ZBTB37;ZBTB37|p.I398Dfs*70|1|0.34|ENSG00000185278|chr1:173885799-173885800|-/G|frameshift_variant;ENSG00000185278|ENST00000367701|ZBTB37	nc|ENSG00000185278|Q5TC79-3|ZBTB37	nc|ENSG00000185278|Q5TC79-3|ZBTB37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7218933105469	2	486.722695	971.430838	-0.6953	-0.00033842	-1.4825	-0.00072154	-2.1777	-0.00106	486.72201818524144	30.625	0.10026	30.625	30.58	30.68	0					4	2	2	0	0	0	0.63224	1	11478	11478		30.318	5.7985	1	86641			44095	7069	29267	29385	44661	44661					-0.056020583896497556
TTGKQLFDHV	10	Unmodified	_TTGKQLFDHV_					0	0	0		ENST00000528172.1_1_11:4232759-4233284:-|nuORF	ENST00000528172.1_1_11:4232759-4233284:-|nuORF	ENST00000528172.1_1_11:4232759-4233284:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	382.5363464355469	3	382.536501	1144.58767	0.83414	0.00031909	-1.5094	-0.00057742	-0.6753	-0.00025833	382.53591147939363	23.964	0.40219	23.964	23.875	24.277	0					13	9	2	0	0	0	0.43008	1	8018	8018		48.602	0	1	1284000			44096	10398	29268	29386	44662	44662					0.02116226500652374
TTGLFCAARLG	11	Unmodified	_TTGLFCAARLG_					0	0	0			REV__ENST00000380262.7_1_17:7835519-7835729:+|nuORF	REV__ENST00000380262.7_1_17:7835519-7835729:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.292724609375	2	555.292233	1108.56991	1.4186	0.00078771	-0.46067	-0.00025581	0.95788	0.0005319	555.7931030577049	27.902	0.1824	27.902	27.816	27.998	0					14	6	3	0	0	0	0.58789	1	8667	8667		37.812	2.1932	1	90610	+		44097	18769	29269	29387	44663	44663					0.01997187974143344
TTGLIKNFI	9	Unmodified	_TTGLIKNFI_					0	0	0			REV__ENSG00000073598|ENST00000158009|FNDC8	REV__ENSG00000073598|ENST00000158009|FNDC8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.8005676269531	2	503.800217	1005.58588	1.0169	0.00051231	-3.4743	-0.0017503	-2.4574	-0.001238	503.80003373027387	41.552	0.70013	41.552	41.128	41.828	0					39	29	2	0	0	0	0.36892	1	16347	16347		44.377	1.5129	1	143940	+		44098	13206	29270	29388	44664	44664					0.08331217482702868
TTGLSAWVTG	10	Unmodified	_TTGLSAWVTG_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.75665283203125	2	496.756007	991.497461	0.11333	5.6296E-05	2.0682	0.0010274	2.1816	0.0010837	496.75729664105353	25.34	0.13422	25.34	25.265	25.399	0					7	4	2	0	0	0	0.39566	1	7610	7610		56.721	3.6321	1	130750			44099	7755	29271	29389	44665	44665					0.0013717717223471482
TTGLTIPWK	9	Unmodified	_TTGLTIPWK_					0	0	0		ENST00000493259.5_1_7:129940668-129944375:+|nuORF	ENST00000493259.5_1_7:129940668-129944375:+|nuORF	ENST00000493259.5_1_7:129940668-129944375:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.79248046875	2	508.792392	1015.57023	-0.021385	-1.0881E-05	0.24594	0.00012513	0.22455	0.00011425	508.79242879156413	42.579	0.58076	42.579	42.317	42.898	0					68	30	3	0	0	0	0.24095	1	16179	16179		56.721	10.749	1	178690			44100	10089	29272	29390	44666	44666					0.06306930965649826
TTGPGSHF	8	Unmodified	_TTGPGSHF_					0	0	0		nc|ENSG00000176842|P78411-3|IRX5;ENST00000558597.1_2_16:54966274-54967782:+|nuORF;nc|ENSG00000176842|P78411-2|IRX5;ENSG00000176842|ENST00000394636|IRX5	nc|ENSG00000176842|P78411-3|IRX5	nc|ENSG00000176842|P78411-3|IRX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.1881103515625	2	402.18776	802.360967	1.8069	0.00072671	-1.5879	-0.00063863	0.21898	8.8071E-05	402.18725219529694	22.967	0.12344	22.967	22.928	23.051	0					7	4	2	0	0	0	0.6282	1	6593	6593		44.531	12.576	1	56313			44101	6626	29273	29391	44667	44667					-0.04811892267616713
TTGQVVAMK	9	Unmodified	_TTGQVVAMK_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2568054199219	2	467.754953	933.495352	0.83442	0.0003903	-0.40127	-0.00018769	0.43315	0.00020261	467.75477230290215	21.849	0.12352	21.849	21.782	21.906	0					5	3	2	0	0	0	0.11898	1	6079	6079		75.043	23.708	1	92051			44102	6226	29274	29392	44668	44668					0.025944251627834092
TTGQVVAMK	9	Unmodified	_TTGQVVAMK_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7544860839844	2	467.754953	933.495352	0.32313	0.00015115	-1.5611	-0.00073022	-1.238	-0.00057907	467.75429236877903	22.188	0.23452	22.188	22.089	22.323	0					13	5	3	0	0	0	0.0047071	1	7160	7160		159.28	56.503	1	836800			44103	6226	29274	29392	44669	44669					0.025944251627834092
TTGQVVAMK	9	Unmodified	_TTGQVVAMK_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7545471191406	2	467.754953	933.495352	-0.13043	-6.1009E-05	-0.9623	-0.00045012	-1.0927	-0.00051113	467.7545136086123	22.079	0.21492	22.079	21.972	22.187	0					11	4	3	0	0	0	0.0047071	1	7411	7411		159.28	85.021	1	1609000			44104	6226	29274	29392	44670	44670					0.025944251627834092
TTGQVVAMK	9	Unmodified	_TTGQVVAMK_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.7546081542969	2	467.754953	933.495352	-0.1966	-9.1962E-05	-0.54345	-0.0002542	-0.74005	-0.00034616	467.75468224046944	21.954	0.14934	21.954	21.871	22.02	0					5	3	2	0	0	0	0.04067	1	6450	6450		98.582	41.861	1	70441			44105	6226	29274	29392	44671	44671					0.025944251627834092
TTGQVVAMK	9	Unmodified	_TTGQVVAMK_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.7549133300781	2	467.754953	933.495352	-0.51056	-0.00023882	-0.81821	-0.00038272	-1.3288	-0.00062154	467.75457460115024	22.097	0.2666	22.097	21.988	22.254	0					15	5	4	0	0	0	0.019258	1	7282	7282		123.21	48.953	1	1114600			44106	6226	29274	29392	44672	44672					0.025944251627834092
TTHITKTVK	9	Unmodified	_TTHITKTVK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.5416564941406	3	343.541475	1027.60259	0.50632	0.00017394	0.52195	0.00017931	1.0283	0.00035325	343.54171692773247	14.652	0.21054	14.652	14.566	14.777	0					7	5	2	0	0	0	0.40353	1	3622	3622		41.427	4.9799	1	549800			44107	1630;9658;1676	29275	29393	44673	44673					0.0898971836866167
TTHITKTVK	9	Unmodified	_TTHITKTVK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.8089599609375	2	514.808574	1027.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.313	1	14.313	13.813	14.813	0								0	0	0	0.25045	1	3081	3081		44.377	1.981	1				44108	1630;9658;1676	29275	29393	44674	44674					0.0898971836866167
TTHITKTVK	9	Unmodified	_TTHITKTVK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.8092041015625	2	514.808574	1027.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.38	1	14.38	13.88	14.88	0								0	0	0	0.1347	1	3037	3037		56.434	27.284	1				44109	1630;9658;1676	29275	29393	44675	44675					0.0898971836866167
TTHPAVPIGQN	11	Unmodified	_TTHPAVPIGQN_					0	0	0			REV__ENST00000525693.5_1_11:65421851-65422496:-|nuORF	REV__ENST00000525693.5_1_11:65421851-65422496:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.869140625	3	378.86825	1133.58292	-0.4559	-0.00017272	2.4247	0.00091865	1.9688	0.00074592	378.86931628417426	18.083	0.25876	18.083	17.931	18.19	0					13	5	4	0	0	0	0.65907	1	5358	5358		27.644	0	1	598640	+		44110	16486	29276	29394	44676	44676					0.021473423578981965
TTHQVYVLK	9	Unmodified	_TTHQVYVLK_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	363.54156494140625	3	363.541475	1087.60259	0.4777	0.00017367	-0.20597	-7.4877E-05	0.27174	9.8789E-05	363.5413047278796	23.394	0.23289	23.394	23.294	23.526	0					8	5	2	0	0	0	0.30841	1	7753	7753		49.536	3.5638	1	319310			44111	6540	29277	29395	44677	44677					0.06229718368649628
TTHQVYVLK	9	Unmodified	_TTHQVYVLK_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.5414733886719	3	363.541475	1087.60259	0.48584	0.00017662	0.019618	7.1318E-06	0.50545	0.00018375	363.5413563487566	23.336	0.26605	23.336	23.179	23.445	0					10	5	3	0	0	0	0.12834	1	8018	8018		72.879	38.707	1	191530			44112	6540	29277	29395	44678	44678					0.06229718368649628
TTHSQPVTR	9	Unmodified	_TTHSQPVTR_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.769775390625	2	513.76998	1025.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.761	1	17.761	17.261	18.261	0								0	0	0	0.37517	1	4300	4300		18.262	0	1				44113	7825	29278	29396	44679	44679					0.013665001523349929
TTHVTKTVK	9	Unmodified	_TTHVTKTVK_					0	0	0		nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.8005676269531	2	507.800749	1013.58694	-0.60646	-0.00030796	-0.14801	-7.516E-05	-0.75447	-0.00038312	507.8005953944857	12.963	0.081122	12.963	12.92	13.001	0					7	3	3	0	0	0	0.017421	1	2610	2610		126.24	38.546	1	182030			44114	1778	29279	29397	44680	44680					0.0806943185162936
TTHVTKTVK	9	Unmodified	_TTHVTKTVK_					0	0	0		nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8005676269531	2	507.800749	1013.58694	1.1267	0.00057214	-1.9265	-0.00097828	-0.79979	-0.00040614	507.799623005151	13.201	0.29397	13.201	13.054	13.348	0					9	4	3	0	0	0	0.056004	1	3169	3169		93.143	25.65	1	2566600			44115	1778	29279	29397	44681	44681					0.0806943185162936
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.56610107421875	3	421.566126	1261.67655	1.2948	0.00054583	-1.4363	-0.00060549	-0.14152	-5.966E-05	421.5654408119196	24.938	0.10794	24.938	24.869	24.977	0					6	3	2	0	0	0	0.64626	1	7429	7429		49.466	17.832	1	123910			44116	6970	29280	29398	44682	44682					0.05617596949673498
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.8453369140625	2	631.84555	1261.67655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.932	1	24.932	24.432	25.432	0								0	0	0	0.26024	1	7433	7433		57.149	17.091	1				44117	6970	29280	29398	44683	44683					0.05617596949673498
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.5659484863281	3	421.566126	1261.67655	0.39302	0.00016569	-0.81071	-0.00034177	-0.41769	-0.00017608	421.5657161536201	25.213	0.20036	25.213	25.074	25.275	0					12	4	4	0	0	0	0.21174	1	8577	8577		99.788	99.788	1	553210			44118	6970	29280	29398	44684	44684					0.05617596949673498
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	631.8456420898438	2	631.84555	1261.67655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.208	1	25.208	24.708	25.708	0								0	0	0	1.0121E-25	1	8583	8583		214.71	94.4	1				44119	6970	29280	29398	44685	44685					0.05617596949673498
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.8458862304688	2	631.84555	1261.67655	-0.73302	-0.00046316	0.1125	7.1083E-05	-0.62052	-0.00039207	631.8461767865538	24.97	0.16381	24.97	24.873	25.037	0					12	5	3	0	0	0	7.0259E-05	1	7701	7701		150.15	64.29	1	213990			44120	6970	29280	29398	44686	44686					0.05617596949673498
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	631.845458984375	2	631.84555	1261.67655	1.5227	0.00096211	-2.6134	-0.0016512	-1.0907	-0.00068913	631.8445574938189	25.197	0.21815	25.197	25.089	25.307	0					11	4	3	0	0	0	0.0092585	1	8924	8924		125.68	34.417	1	1449400			44121	6970	29280	29398	44687	44687					0.05617596949673498
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	631.8455200195312	2	631.84555	1261.67655	-2.1899	-0.0013837	1.4112	0.00089167	-0.77866	-0.000492	631.8471698749323	25.038	0.14787	25.038	24.937	25.085	0					8	3	3	0	0	0	0.040365	1	7908	7908		109.83	49.899	1	203070			44122	6970	29280	29398	44688	44688					0.05617596949673498
TTIEEDKSVLK	11	Unmodified	_TTIEEDKSVLK_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	631.8458251953125	2	631.84555	1261.67655	3.1016	0.0019597	-3.7227	-0.0023522	-0.62114	-0.00039247	631.8438152523566	25.136	0.2191	25.136	25.028	25.247	0					13	4	4	0	0	0	5.6407E-05	1	8774	8774		158.47	43.576	1	1099500			44123	6970	29280	29398	44689	44689					0.05617596949673498
TTIKAFFPKK	10	Unmodified	_TTIKAFFPKK_					0	0	0		ENST00000510740.1_1_5:36668711-36725248:-|nuORF	ENST00000510740.1_1_5:36668711-36725248:-|nuORF	ENST00000510740.1_1_5:36668711-36725248:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.24127197265625	3	394.241137	1179.70158	-0.6573	-0.00025913	0.55998	0.00022077	-0.097317	-3.8366E-05	394.2413468167947	28.018	0.51824	28.018	27.959	28.478	0					21	10	4	0	0	0	0.54861	1	10140	10140		40.058	11.977	1	354050			44124	10233	29281	29399	44690	44690					0.118917413335339
TTIKAPLKP	9	Unmodified	_TTIKAPLKP_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000474340.1_1_9:95003027-95004705:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.8104553222656	2	484.810585	967.606617	0.6408	0.00031067	-1.1296	-0.00054765	-0.48883	-0.00023699	484.8100270495949	24.905	0.20567	24.905	24.786	24.992	0					8	5	2	0	0	0	0.26904	1	8459	8459		53.351	7.3792	1	302730			44125	7347	29282	29400	44691	44691					0.12151807862380792
TTILESAGGRV	11	Unmodified	_TTILESAGGRV_					0	0	0			REV__C8B|p.H434L|1|0.07|ENSG00000021852|chr1:56940946-56940946|T/A|missense_variant	REV__C8B|p.H434L|1|0.07|ENSG00000021852|chr1:56940946-56940946|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.53997802734375	3	368.540022	1102.59824	1.0826	0.00039899	-1.2302	-0.00045338	-0.14759	-5.4392E-05	368.5396062831669	15.331	0.5585	15.331	15.227	15.786	0					16	11	2	0	0	0	0.69524	1	4159	4159		31.068	0	1	867170	+		44126	12309	29283	29401	44692	44692					0.05104209155092576
TTILYRLQ	8	Unmodified	_TTILYRLQ_					0	0	0		ENST00000549302.1_1_12:101799535-101801423:-|nuORF;nc|ENSG00000120805|P40616-2|ARL1;ENSG00000120805|ENST00000261636|ARL1	ENST00000549302.1_1_12:101799535-101801423:-|nuORF	ENST00000549302.1_1_12:101799535-101801423:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5341796875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.512	1	39.512	39.012	40.012	0								0	0	0	1.7419	1	13276	13276		20.947	0	1				44127	3195	29285	29402	44693	44693					0.07810333339955378
TTILYRLQ	8	Unmodified	_TTILYRLQ_					0	0	0		ENST00000549302.1_1_12:101799535-101801423:-|nuORF;nc|ENSG00000120805|P40616-2|ARL1;ENSG00000120805|ENST00000261636|ARL1	ENST00000549302.1_1_12:101799535-101801423:-|nuORF	ENST00000549302.1_1_12:101799535-101801423:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.534423828125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.484	1	41.484	40.984	41.984	0								0	0	0	1.7419	1	16309	16309		15.642	1.5047	1				44128	3195	29285	29402	44694	44694					0.07810333339955378
TTINKWLW	8	Unmodified	_TTINKWLW_					0	0	0		tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2923583984375	2	531.292559	1060.57057	0.72448	0.00038491	-0.57429	-0.00030511	0.1502	7.9799E-05	531.2921555143279	28.269	0.26618	28.269	28.16	28.426	0					10	5	2	0	0	0	0.54629	1	10236	10236		55.504	7.8469	1	324570			44129	22590	29286	29403	44695	44695					0.042703506855104933
TTISAEKVKKK	11	Unmodified	_TTISAEKVKKK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	411.5904541015625	3	411.590605	1231.74999	-0.14861	-6.1165E-05	0.004507	1.8551E-06	-0.1441	-5.931E-05	411.59066988182207	14.412	0.095612	14.412	14.345	14.441	0					7	5	2	0	0	0	0.52595	1	2965	2965		42.338	18.815	1	46836			44130	3193	29287	29404	44696	44696					0.14338190182797916
TTISAEKVKKK	11	Unmodified	_TTISAEKVKKK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.590576171875	3	411.590605	1231.74999	1.0903	0.00044876	-1.1837	-0.00048719	-0.093376	-3.8433E-05	411.59013555475735	14.688	0.2642	14.688	14.582	14.846	0					6	5	2	0	0	0	0.69983	1	3875	3875		27.644	0.59661	1	811920			44131	3193	29287	29404	44697	44697					0.14338190182797916
TTISELLESQ	10	Unmodified	_TTISELLESQ_					0	0	0		tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1	tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1	tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.7923583984375	2	560.790244	1119.56593	4.3402	0.002434	-0.90631	-0.00050825	3.4339	0.0019257	560.7896062803698	28.185	0.20322	28.185	28.106	28.31	0					13	7	3	0	0	0	0.57211	1	9058	9058		32.812	32.812	1	171050			44132	22784	29288	29405	44698	44698					0.010933769614211997
TTISRVKLL	9	Unmodified	_TTISRVKLL_					0	0	0		nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;ENST00000606952.5_1_1:156182806-156203452:+|nuORF;nc|ENSG00000160783|Q6P1K2-2|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.22503662109375	3	344.225486	1029.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.142	1	28.142	27.642	28.642	0								0	0	0	0.3693	1	9042	9042		19.997	1.7347	1				44133	5384	29289	29406	44699	44699					0.14098881782433637
TTKDIVYSLLS	11	Unmodified	_TTKDIVYSLLS_					0	0	0		tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	413.8983154296875	3	413.899216	1238.67582	-0.3972	-0.0001644	-1.8252	-0.00075546	-2.2224	-0.00091986	413.89844349950096	17.589	0.21887	17.589	17.481	17.7	0					9	4	3	0	0	0	0.67983	1	5113	5113		29.551	3.4874	1	646130			44134	22930	29290	29407	44700	44700					0.06602802300631083
TTKHYVIIHQ	10	Unmodified	_TTKHYVIIHQ_					0	0	0		ENSG00000256087|ENST00000221315|ZNF432	ENSG00000256087|ENST00000221315|ZNF432	ENSG00000256087|ENST00000221315|ZNF432	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2330627441406	3	413.899662	1238.67716	0.59581	0.00024661	-3.2715	-0.0013541	-2.6757	-0.0011075	414.2325316742574	17.3	0.099533	17.3	17.268	17.368	0					5	3	2	0	0	0	0.28675	1	4111	4111		68.846	0	1	77606			44135	8024	29291	29408	44701	44701					0.06736481180041665
TTKHYVIIHQ	10	Unmodified	_TTKHYVIIHQ_					0	0	0		ENSG00000256087|ENST00000221315|ZNF432	ENSG00000256087|ENST00000221315|ZNF432	ENSG00000256087|ENST00000221315|ZNF432	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	620.3438110351562	2	620.345855	1238.67716	0.66638	0.00041339	-3.2279	-0.0020024	-2.5615	-0.001589	620.3434378462478	17.362	0.066673	17.362	17.323	17.39	0					4	2	2	0	0	0	0.63851	1	4342	4342		18.262	5.4504	1	70239			44136	8024	29291	29408	44702	44702					0.06736481180041665
TTKHYVIIHQ	10	Unmodified	_TTKHYVIIHQ_					0	0	0		ENSG00000256087|ENST00000221315|ZNF432	ENSG00000256087|ENST00000221315|ZNF432	ENSG00000256087|ENST00000221315|ZNF432	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.8986511230469	3	413.899662	1238.67716	-0.069569	-2.8794E-05	-2.773	-0.0011478	-2.8426	-0.0011766	413.8985996058618	17.415	0.11464	17.415	17.335	17.45	0					7	3	3	0	0	0	0.56063	1	4331	4331		38.754	0	1	137140			44137	8024	29291	29408	44703	44703					0.06736481180041665
TTKKPPLAQK	10	Unmodified	_TTKKPPLAQK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.2325744628906	3	371.232641	1110.67609	0.94223	0.00034979	-0.35778	-0.00013282	0.58445	0.00021697	371.232753777954	14.638	0.43495	14.638	14.362	14.797	0					18	9	4	0	0	0	0.09653	1	3854	3854		117.71	52.548	1	1426600			44138	3672	29292	29409	44704	44704					0.12518266811139256
TTKKPPLAQK	10	Unmodified	_TTKKPPLAQK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.3455200195312	2	556.345323	1110.67609	1.6934	0.0009421	-0.95538	-0.00053152	0.73799	0.00041058	556.3446145442615	14.638	0.29804	14.638	14.45	14.748	0					17	6	4	0	0	0	0.0090663	1	3856	3856		146.79	45.185	1	1354500			44139	3672	29292	29409	44705	44705					0.12518266811139256
TTKKPPLAQK	10	Unmodified	_TTKKPPLAQK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	371.2324523925781	3	371.232641	1110.67609	-0.11639	-4.3207E-05	0.3609	0.00013398	0.24451	9.0771E-05	371.2327936759963	14.415	0.11782	14.415	14.34	14.457	0					6	4	2	0	0	0	0.48965	1	3048	3048		75.652	35.779	1	99682			44140	3672	29292	29409	44706	44706					0.12518266811139256
TTKKPPLAQK	10	Unmodified	_TTKKPPLAQK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.3455810546875	2	556.345323	1110.67609	1.8231	0.0010143	-1.2564	-0.00069901	0.56668	0.00031527	556.3445559774891	14.6	0.32025	14.6	14.391	14.711	0					15	6	4	0	0	0	0.065778	1	3683	3683		104.01	21.263	1	1243600			44141	3672	29292	29409	44707	44707					0.12518266811139256
TTKKRMAMAQ	10	Unmodified	_TTKKRMAMAQ_					0	0	0		ENST00000407924.2_1_6:27705341-27705923:-|nuORF	ENST00000407924.2_1_6:27705341-27705923:-|nuORF	ENST00000407924.2_1_6:27705341-27705923:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.3126220703125	2	583.312643	1164.61073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.598	1	12.598	12.098	13.098	0								0	0	0	0.35072	1	2719	2719		42.864	6.4175	1				44142	9287	29293	29410	44708	44708					0.03501206022133374
TTKLILQKLS	10	Unmodified	_TTKLILQKLS_					0	0	0			REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.2480163574219	3	382.24818	1143.72271	0.20895	7.9871E-05	-0.54402	-0.00020795	-0.33506	-0.00012808	382.248067921552	30.685	0.10678	30.685	30.601	30.708	0					4	2	2	0	0	0	0.70274	1	11495	11495		21.686	0	1	114020	+		44143	14722	29294	29411	44709	44709					0.15659706642418314
TTKQEPKRT	9	Unmodified	_TTKQEPKRT_					0	0	0			REV__sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	REV__sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.541748046875	3	363.540134	1087.59857	3.5815	0.001302	0.064547	2.3466E-05	3.6461	0.0013255	363.54015344603096	23.189	0.28754	23.189	23.098	23.385	0					21	9	3	0	0	0	0.36892	1	6915	6915		44.377	1.5129	1	992960	+		44144	21591	29295	29412	44710	44710					0.05827628874953916
TTKVETTK	8	Unmodified	_TTKVETTK_					0	0	0			REV__IGDCC3|p.A767V|2|0.09|ENSG00000174498|chr15:65329054-65329054|G/A|missense_variant	REV__IGDCC3|p.A767V|2|0.09|ENSG00000174498|chr15:65329054-65329054|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2583923339844	2	454.258382	906.502212	-0.42023	-0.00019089	0.23708	0.00010769	-0.18315	-8.3199E-05	454.2585303472758	18.629	0.21176	18.629	18.572	18.784	0					7	4	2	0	0	0	0.39125	1	5621	5621		71.877	5.4482	1	963710	+		44145	20757	29296	29413	44711	44711					0.045220613150036115
TTLAFKPIKK	10	Unmodified	_TTLAFKPIKK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	382.9132080078125	3	382.91302	1145.71723	-1.1506	-0.00044057	0.46955	0.0001798	-0.68102	-0.00026077	382.9132161961188	23.662	0.097385	23.662	23.612	23.709	0					8	3	3	0	0	0	0.70274	1	7153	7153		21.686	1.6553	1	65656			44146	3738	29297	29414	44712	44712					0.15020027850596307
TTLAFKPIKK	10	Unmodified	_TTLAFKPIKK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.9129333496094	3	382.91302	1145.71723	0.36919	0.00014137	-0.89378	-0.00034224	-0.52459	-0.00020087	382.9127040710349	23.855	0.36729	23.855	23.796	24.163	0					10	7	2	0	0	0	0.44292	1	8290	8290		51.528	25.464	1	745790			44147	3738	29297	29414	44713	44713					0.15020027850596307
TTLAFKPIKK	10	Unmodified	_TTLAFKPIKK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.9129638671875	3	382.91302	1145.71723	0.60743	0.00023259	-0.95825	-0.00036693	-0.35082	-0.00013433	382.9126684671237	23.821	0.16768	23.821	23.763	23.931	0					9	3	3	0	0	0	0.15477	1	8145	8145		85.862	44.435	1	868550			44148	3738	29297	29414	44714	44714					0.15020027850596307
TTLDTTKK	8	Unmodified	_TTLDTTKK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.2581481933594	2	454.258382	906.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.464	1	18.464	17.964	18.964	0								0	0	0	1.7419	1	4827	4827		40.573	3.5441	1		+		44149	15602;22247;21074	29298	29415	44715	44715					0.04522061314992243
TTLGALIKSG	10	Unmodified	_TTLGALIKSG_					0	0	0			REV__UCP1|p.I130Mfs*8|1|0.27|ENSG00000109424|chr4:140563454-140563454|A/-|frameshift_variant	REV__UCP1|p.I130Mfs*8|1|0.27|ENSG00000109424|chr4:140563454-140563454|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.78961181640625	2	480.78985	959.565146	-1.3689	-0.00065813	1.2691	0.00061016	-0.099782	-4.7974E-05	480.7901988700353	27.936	0.11504	27.936	27.877	27.992	0					6	4	2	0	0	0	0.66185	1	8962	8962		26.693	0	1	73046	+		44150	13901	29299	29416	44716	44716					0.08374627103069088
TTLGHAVLK	9	Unmodified	_TTLGHAVLK_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2848205566406	2	470.284734	938.554916	-0.61697	-0.00029015	0.88345	0.00041547	0.26648	0.00012532	470.2850833927148	22.602	0.22466	22.602	22.501	22.726	0					14	5	4	0	0	0	0.087861	1	7373	7373		82.241	13.756	1	1044500			44151	4356	29300	29417	44717	44717					0.08318064168474848
TTLIQELIT	9	Unmodified	_TTLIQELIT_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|325|3|anti-sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|325|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.5368957519531	3	344.537619	1030.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.572	1	11.572	11.072	12.072	0								0	0	0	0.3428	1	2403	2403		26.693	3.1702	1		+		44152	20735	29301	29418	44718	44718					0.07695476554658853
TTLKIMSSK	9	Unmodified	_TTLKIMSSK_					0	0	0		MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7898864746094	2	504.791535	1007.56852	-2.0009	-0.00101	-0.66986	-0.00033814	-2.6708	-0.0013482	504.7910344565749	41.273	0.078232	41.273	41.209	41.287	0					8	4	2	0	0	0	0.50858	1	14554	14554		31.53	5.9558	1	50385			44153	6840	29302	29419	44719	44719					0.06503553885409019
TTLKYPYKS	9	Unmodified	_TTLKYPYKS_					0	0	0		VAV2|p.D760N|1|0.53|ENSG00000160293|chr9:133770447-133770447|C/T|missense_variant;nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2	VAV2|p.D760N|1|0.53|ENSG00000160293|chr9:133770447-133770447|C/T|missense_variant	VAV2|p.D760N|1|0.53|ENSG00000160293|chr9:133770447-133770447|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.8068237304688	2	550.802957	1099.59136	4.6166	0.0025428	2.7417	0.0015102	7.3583	0.004053	550.8042701338235	22.413	0.16253	22.413	22.331	22.494	0					6	4	2	0	0	0	0.22377	1	6603	6603		58.782	0.97068	1	180580			44154	5356	29303	29420	44720	44720					0.04554896274521525
TTLLDKTK	8	Unmodified	_TTLLDKTK_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2760925292969	2	460.276575	918.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.641	1	28.641	28.141	29.141	0								0	0	0	1.7419	1	10144	10144		42.396	0	1		+		44155	16345	29304	29421	44721	44721					0.07606938211722536
TTLLLQHNQ	9	Unmodified	_TTLLLQHNQ_					0	0	0		LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant;nc|ENSG00000128606|Q8N6Y2-2|LRRC17;LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant;ENSG00000128606|ENST00000339431|LRRC17;LRRC17|p.K202Nfs*5|1|0.42|ENSG00000128606|chr7:102934514-102934514|A/-|frameshift_variant	LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant	LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	356.5329284667969	3	356.532979	1066.57711	1.3801	0.00049207	0.31589	0.00011263	1.696	0.00060469	356.5329675150228	15.154	0.26789	15.154	15.096	15.364	0					10	5	2	0	0	0	0.41113	1	3946	3946		40.778	0	1	396320			44156	3553	29305	29422	44722	44722					0.04648243846236255
TTLNGIRLK	9	Unmodified	_TTLNGIRLK_					0	0	0		ENST00000551219.5_1_12:71092119-71148195:-|nuORF	ENST00000551219.5_1_12:71092119-71148195:-|nuORF	ENST00000551219.5_1_12:71092119-71148195:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	339.5478820800781	3	339.213469	1014.61858	-0.70213	-0.00023817	0.50793	0.0001723	-0.1942	-6.5874E-05	339.5480944473344	21.923	0.066544	21.923	21.889	21.956	0					4	2	2	0	0	0	0.47473	1	6384	6384		35.152	4.8343	1	84191			44157	10623	29306	29423	44723	44723					0.1118542460557137
TTLNSPPLKK	10	Unmodified	_TTLNSPPLKK_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.888671875	3	366.888763	1097.64446	0.7556	0.00027722	0.052159	1.9137E-05	0.80776	0.00029636	366.8884428568518	21.353	0.74001	21.353	21.052	21.792	0					27	17	2	0	0	0	0.34667	1	6766	6766		65.157	23.731	1	1242000			44158	266	29307	29424	44724	44724					0.0995427405719056
TTLNSPPLKK	10	Unmodified	_TTLNSPPLKK_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.8302612304688	2	549.829506	1097.64446	0.53297	0.00029304	0.99367	0.00054635	1.5266	0.00083939	549.8299700345564	21.36	0.52168	21.36	20.997	21.518	0					29	12	3	0	0	0	0.049549	1	6776	6776		109.48	34.435	1	845860			44159	266	29307	29424	44725	44725					0.0995427405719056
TTLNSPPLKK	10	Unmodified	_TTLNSPPLKK_					0	0	0		B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	B2M|p.V69Wfs*34|1|0.32|ENSG00000166710|chr15:44715555-44715555|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.829833984375	2	549.829506	1097.64446	3.7603	0.0020675	-2.2142	-0.0012174	1.5461	0.00085012	549.8277969270182	21.31	0.61122	21.31	20.96	21.571	0					30	12	3	0	0	0	0.030421	1	6908	6908		117.81	48.965	1	889680			44160	266	29307	29424	44726	44726					0.0995427405719056
TTLNVIRL	8	Unmodified	_TTLNVIRL_					0	0	0		ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50	ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENST00000471188.5_1_7:92887656-92969983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.29248046875	2	465.292559	928.570566	-0.43956	-0.00020452	-0.20432	-9.5067E-05	-0.64388	-0.00029959	465.2924638439775	25.029	0.074724	25.029	24.977	25.052	0					4	2	2	0	0	0	0.70055	1	7481	7481		33.516	1.5607	1	35935			44161	943	29308	29425	44727	44727					0.10342350685516521
TTLPTDFNY	9	Unmodified	_TTLPTDFNY_					0	0	0		nc|ENSG00000121152|Q15003-2|NCAPH;ENSG00000121152|ENST00000240423|NCAPH	nc|ENSG00000121152|Q15003-2|NCAPH	nc|ENSG00000121152|Q15003-2|NCAPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.2525024414062	2	536.253297	1070.49204	0.19537	0.00010477	-2.6124	-0.0014009	-2.417	-0.0012961	536.2527668640876	39.997	0.20096	39.997	39.932	40.133	0					15	7	3	0	0	0	0.55379	1	15247	15247		26.693	1.1189	1	97361			44162	3214	29309	29426	44728	44728					-0.04038546410242816
TTLRFGAPL	9	Unmodified	_TTLRFGAPL_					0	0	0			REV__nc|ENSG00000139220|O75334-8|PPFIA2	REV__nc|ENSG00000139220|O75334-8|PPFIA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2848205566406	2	488.284734	974.554916	-1.2481	-0.00060943	1.0378	0.00050674	-0.21031	-0.00010269	488.28520438384226	35.608	0.21948	35.608	35.518	35.737	0					20	11	2	0	0	0	0.41113	1	12044	12044		40.778	0.20554	1	196530	+		44163	15017	29310	29427	44729	44729					0.06662064168483539
TTLSGGPLQP	10	Unmodified	_TTLSGGPLQP_					0	0	0		ENST00000356956.5_2_6:160431737-160445634:+|nuORF	ENST00000356956.5_2_6:160431737-160445634:+|nuORF	ENST00000356956.5_2_6:160431737-160445634:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.7629089355469	2	485.763832	969.513111	-0.021004	-1.0203E-05	0.45472	0.00022089	0.43372	0.00021068	485.7639774099227	20.785	0.22056	20.785	20.669	20.89	0					14	8	2	0	0	0	0.43008	1	5625	5625		52.937	2.9122	1	56606			44164	8812	29311	29428	44730	44730					0.027134636892810704
TTLSGGPLQP	10	Unmodified	_TTLSGGPLQP_					0	0	0		ENST00000356956.5_2_6:160431737-160445634:+|nuORF	ENST00000356956.5_2_6:160431737-160445634:+|nuORF	ENST00000356956.5_2_6:160431737-160445634:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.7635192871094	2	485.763832	969.513111	-0.56039	-0.00027222	0.26587	0.00012915	-0.29452	-0.00014307	485.76394484104344	21.001	0.36415	21.001	20.793	21.158	0					22	7	4	0	0	0	0.32758	1	6780	6780		64.207	9.431	1	902450			44165	8812	29311	29428	44731	44731					0.027134636892810704
TTLTEEVNY	9	Unmodified	_TTLTEEVNY_					0	0	0			REV__ENSG00000101350|ENST00000375712|KIF3B	REV__ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.257080078125	2	535.256037	1068.49752	3.3669	0.0018021	-1.1732	-0.00062795	2.1937	0.0011742	535.255286117749	33.223	0.31094	33.223	33.121	33.432	0					15	6	3	0	0	0	0.25109	1	12618	12618		55.504	10.973	1	2039700	+		44166	13601	29312	29429	44732	44732					-0.03398867618420809
TTLTFPVGK	9	Unmodified	_TTLTFPVGK_					0	0	0			REV__ENST00000473911.1_1_9:139890098-139890974:-|nuORF	REV__ENST00000473911.1_1_9:139890098-139890974:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7770690917969	2	482.279118	962.543683	-0.61382	-0.00029603	-0.19368	-9.3408E-05	-0.8075	-0.00038944	482.27900334949726	37.952	0.62685	37.952	37.708	38.334	0					35	13	5	0	0	0	0.41113	1	14806	14806		40.778	14.085	1	8063200	+		44167	16321	29313	29430	44733	44733					0.06091242074330694
TTLTSQYIK	9	Unmodified	_TTLTSQYIK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7931518554688	2	527.792589	1053.57063	0.5562	0.00029356	0.12705	6.7054E-05	0.68325	0.00036061	527.7926556129428	30.224	0.26752	30.224	30.132	30.4	0					16	9	2	0	0	0	0.04067	1	9596	9596		98.582	28.954	1	611020			44168	6707	29314	29431	44734	44734					0.045983058948422695
TTLTSQYIK	9	Unmodified	_TTLTSQYIK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7925415039062	2	527.792589	1053.57063	0.1063	5.6106E-05	-0.12184	-6.4309E-05	-0.015541	-8.2026E-06	527.7925791897908	30.523	0.30866	30.523	30.394	30.703	0					20	7	4	0	0	0	0.0067848	1	11000	11000		150.36	70.649	1	2733700			44169	6707	29314	29431	44735	44735					0.045983058948422695
TTLTSQYIK	9	Unmodified	_TTLTSQYIK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.7929077148438	2	527.792589	1053.57063	0.26545	0.0001401	0.50057	0.0002642	0.76602	0.0004043	527.7928343221706	30.284	0.22876	30.284	30.193	30.422	0					17	7	3	0	0	0	0.011389	1	9917	9917		138.06	47.693	1	975700			44170	6707	29314	29431	44736	44736					0.045983058948422695
TTLTSQYIK	9	Unmodified	_TTLTSQYIK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.79296875	2	527.792589	1053.57063	1.7524	0.00092493	-1.2611	-0.00066559	0.49138	0.00025934	527.7919131925779	30.505	0.43599	30.505	30.306	30.742	0					21	9	3	0	0	0	0.0067848	1	11396	11396		150.36	70.649	1	4030300			44171	6707	29314	29431	44737	44737					0.045983058948422695
TTLTSQYIK	9	Unmodified	_TTLTSQYIK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7929077148438	2	527.792589	1053.57063	1.2478	0.00065859	-0.8643	-0.00045617	0.38351	0.00020242	527.7920922530885	30.281	0.21758	30.281	30.186	30.403	0					9	5	3	0	0	0	0.020674	1	10288	10288		120.87	48.991	1	283280			44172	6707	29314	29431	44738	44738					0.045983058948422695
TTLTSQYIK	9	Unmodified	_TTLTSQYIK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7926635742188	2	527.792589	1053.57063	1.6289	0.00085971	-1.3169	-0.00069506	0.31197	0.00016465	527.7918897820969	30.449	0.35456	30.449	30.325	30.68	0					19	7	4	0	0	0	0.0049871	1	11275	11275		158.07	56.474	1	1884700			44173	6707	29314	29431	44739	44739					0.045983058948422695
TTLYDVVRA	9	Unmodified	_TTLYDVVRA_					0	0	0			REV__ENST00000399325.2_1_X:133406709-133407198:+|nuORF	REV__ENST00000399325.2_1_X:133406709-133407198:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7876586914062	2	519.284931	1036.55531	1.3849	0.00071916	-0.57348	-0.0002978	0.81143	0.00042136	519.2846285120901	39.315	0.40178	39.315	39.189	39.591	0					32	14	3	0	0	0	0.38666	1	14935	14935		35.618	0.46626	1	597170	+		44174	18932	29315	29432	44740	44740					0.03849439097666618
TTMDLPVSK	9	Unmodified	_TTMDLPVSK_					0	0	0		RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant;RGS5|p.P30Ffs*54|1|0.05|ENSG00000143248|chr1:163168325-163168326|-/AA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.260498046875	2	496.260068	990.505582	0.54358	0.00026976	-0.28394	-0.00014091	0.25964	0.00012885	496.2598714252672	30.57	0.31236	30.57	30.458	30.771	0					12	7	3	0	0	0	0.035106	1	11034	11034		104.01	45.232	1	151050			44175	22341	29316	29433	44741	44741					0.00994988097352234
TTMDLPVSK	9	Unmodified	_TTMDLPVSK_					0	0	0		RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant;RGS5|p.P30Ffs*54|1|0.05|ENSG00000143248|chr1:163168325-163168326|-/AA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.25933837890625	2	496.260068	990.505582	3.411	0.0016928	-3.6946	-0.0018335	-0.28358	-0.00014073	496.25823918891024	30.36	0.15107	30.36	30.252	30.404	0					6	4	2	0	0	0	0.36892	1	9959	9959		44.377	7.9304	1	81488			44176	22341	29316	29433	44742	44742					0.00994988097352234
TTMDLPVSK	9	Unmodified	_TTMDLPVSK_					0	0	0		RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant;RGS5|p.P30Ffs*54|1|0.05|ENSG00000143248|chr1:163168325-163168326|-/AA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	RGS5|p.P30Lfs*54|1|0.05|ENSG00000143248|chr1:163168324-163168325|-/TA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2595520019531	2	496.260068	990.505582	-0.035108	-1.7423E-05	-0.62216	-0.00030875	-0.65727	-0.00032618	496.2598388308481	30.521	0.2484	30.521	30.416	30.664	0					8	5	2	0	0	0	0.085655	1	11429	11429		82.75	16.321	1	309950			44177	22341	29316	29433	44743	44743					0.00994988097352234
TTMHVEVRW	9	Unmodified	_TTMHVEVRW_					0	0	0		nc|ENSG00000204290|Q9UIR0-3|BTNL2;nc|ENSG00000204290|Q9UIR0-2|BTNL2;nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2	nc|ENSG00000204290|Q9UIR0-3|BTNL2	nc|ENSG00000204290|Q9UIR0-3|BTNL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.788330078125	2	579.789858	1157.56516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.273	1	41.273	40.773	41.773	0								0	0	0	0.28164	1	14565	14565		38.806	9.6361	1				44178	7690	29317	29434	44744	44744					-0.0073169616860013775
TTMIKQLCET	10	Carbamidomethyl (C)	_TTMIKQLC(Carbamidomethyl (C))ET_	TTMIKQLC(1)ET		TTMIKQLC(88)ET		0	1	0			REV__ENSG00000178038|ENST00000318962|ALS2CL	REV__ENSG00000178038|ENST00000318962|ALS2CL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.8040161132812	2	612.801774	1223.58899	2.9758	0.0018236	0.65569	0.00040181	3.6315	0.0022254	612.8022152978264	34.126	0.55128	34.126	34.021	34.572	0					26	11	3	0	0	0	0.14151	1	13057	13057		88.177	17.778	1	963930	+		44179	16720	29318	29435	44745	44745	592				-0.01385643517119206
TTMKVHIKR	9	Unmodified	_TTMKVHIKR_					0	0	0		nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.33203125	2	557.331693	1112.64883	0.55085	0.000307	-0.1017	-5.6678E-05	0.44915	0.00025033	557.3316292568736	17.419	0.32663	17.419	17.331	17.658	0					16	8	4	0	0	0	0.078509	1	4915	4915		85.161	31.809	1	748760			44180	6193	29319	29436	44746	44746					0.0970145999910983
TTMKVHIKR	9	Unmodified	_TTMKVHIKR_					0	0	0		nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.3320922851562	2	557.331693	1112.64883	3.492	0.0019462	-3.0879	-0.001721	0.40408	0.00022521	557.3300895601395	17.355	0.35394	17.355	17.209	17.563	0					12	7	3	0	0	0	0.037924	1	5003	5003		101.25	55.301	1	685490			44181	6193	29319	29436	44747	44747					0.0970145999910983
TTMQALAEK	9	Unmodified	_TTMQALAEK_					0	0	0		ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57;nc|ENSG00000166037|Q86XR8-3|CEP57	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7574768066406	2	496.757692	991.500831	0.71845	0.00035689	-1.447	-0.00071882	-0.72857	-0.00036192	496.75699679485064	25.628	0.17528	25.628	25.541	25.716	0					8	4	2	0	0	0	0.037098	1	8792	8792		102.06	37.854	1	625190			44182	5854	29320	29437	44748	44748					0.004741039545933745
TTMQALAEK	9	Unmodified	_TTMQALAEK_					0	0	0		ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57;nc|ENSG00000166037|Q86XR8-3|CEP57	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7580261230469	2	496.757692	991.500831	-0.032163	-1.5977E-05	0.18413	9.1468E-05	0.15197	7.5491E-05	496.7578463361838	25.611	0.16428	25.611	25.506	25.67	0					6	3	2	0	0	0	0.13109	1	9121	9121		72.243	17.467	1	231220			44183	5854	29320	29437	44749	44749					0.004741039545933745
TTMQALAEK	9	Unmodified	_TTMQALAEK_					0	0	0		ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57;nc|ENSG00000166037|Q86XR8-3|CEP57	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7570495605469	2	496.757692	991.500831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.476	1	25.476	24.976	25.976	0								0	0	0	0.31222	1	8106	8106		32.751	3.5805	1				44184	5854	29320	29437	44750	44750					0.004741039545933745
TTMTGTVLK	9	Unmodified	_TTMTGTVLK_					0	0	0		ENST00000533445.1_1_11:4076769-4103426:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2619323730469	2	476.26261	950.510668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.411	1	26.411	25.911	26.911	0								0	0	0	0.18645	1	8024	8024		52.937	15.778	1				44185	5984	29321	29438	44751	44751					0.033432919599590605
TTMTGTVLK	9	Unmodified	_TTMTGTVLK_					0	0	0		ENST00000533445.1_1_11:4076769-4103426:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2623596191406	2	476.26261	950.510668	0.35368	0.00016845	-3.2638	-0.0015544	-2.9101	-0.001386	476.2619053481897	26.677	0.53182	26.677	26.287	26.819	0					18	12	2	0	0	0	0.078509	1	9242	9242		85.161	24.189	1	670250			44186	5984	29321	29438	44752	44752					0.033432919599590605
TTMTGTVLK	9	Unmodified	_TTMTGTVLK_					0	0	0		ENST00000533445.1_1_11:4076769-4103426:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.26214599609375	2	476.26261	950.510668	-0.11875	-5.6555E-05	-2.285	-0.0010882	-2.4037	-0.0011448	476.26220094009	26.68	0.21774	26.68	26.577	26.795	0					9	4	3	0	0	0	0.032052	1	9570	9570		107.01	38.221	1	333240			44187	5984	29321	29438	44753	44753					0.033432919599590605
TTMTGTVLK	9	Unmodified	_TTMTGTVLK_					0	0	0		ENST00000533445.1_1_11:4076769-4103426:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.26226806640625	2	476.26261	950.510668	-0.6238	-0.00029709	-0.94037	-0.00044786	-1.5642	-0.00074496	476.26230215834227	26.611	0.36611	26.611	26.502	26.868	0					10	7	2	0	0	0	0.098791	1	9434	9434		79.713	0.26157	1	591100			44188	5984	29321	29438	44754	44754					0.033432919599590605
TTMVPTAALAK	11	Unmodified	_TTMVPTAALAK_					0	0	0		ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF;nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000534072.1_1_8:145139936-145140713:+|nuORF	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3104858398438	2	552.310092	1102.60563	1.8247	0.0010078	-0.75536	-0.0004172	1.0693	0.00059061	552.3096466565497	32.789	0.20613	32.789	32.709	32.915	0					8	5	2	0	0	0	0.46959	1	12083	12083		46.457	14.927	1	108200			44189	7500	29322	29439	44755	44755					0.058432254311583165
TTMVPTAALAK	11	Unmodified	_TTMVPTAALAK_					0	0	0		ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF;nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000534072.1_1_8:145139936-145140713:+|nuORF	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3109130859375	2	552.310092	1102.60563	0.78465	0.00043337	0.54919	0.00030332	1.3338	0.00073669	552.3104470417732	32.729	0.26702	32.729	32.573	32.84	0					9	5	2	0	0	0	0.074075	1	12379	12379		96.034	31.826	1	171940			44190	7500	29322	29439	44756	44756					0.058432254311583165
TTNDIVISK	9	Unmodified	_TTNDIVISK_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.77740478515625	2	495.776939	989.539325	1.4782	0.00073283	-0.96996	-0.00048088	0.50819	0.00025195	495.7763676151433	24.938	0.27167	24.938	24.838	25.11	0					16	8	3	0	0	0	0.0009224	1	7427	7427		183.72	62.854	1	531400			44191	2779	29323	29440	44757	44757					0.0441373286076896
TTNDIVISK	9	Unmodified	_TTNDIVISK_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.77703857421875	2	495.776939	989.539325	0.53844	0.00026695	-1.3701	-0.00067925	-0.83164	-0.00041231	495.77640913231915	25.27	0.58205	25.27	25.03	25.612	0					39	13	4	0	0	0	0.0034376	1	8579	8579		166.07	50.577	1	3860800			44192	2779	29323	29440	44758	44758					0.0441373286076896
TTNDIVISK	9	Unmodified	_TTNDIVISK_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7767028808594	2	495.776939	989.539325	-0.037758	-1.872E-05	-0.49811	-0.00024695	-0.53586	-0.00026567	495.7766410677337	25.214	0.56382	25.214	25.106	25.67	0					19	11	2	0	0	0	4.1772E-10	1	8907	8907		223.36	87.096	1	4151000			44193	2779	29323	29440	44759	44759					0.0441373286076896
TTNDIVISK	9	Unmodified	_TTNDIVISK_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7771911621094	2	495.776939	989.539325	0.043615	2.1623E-05	0.61052	0.00030268	0.65413	0.0003243	495.7771923271068	25.046	0.19051	25.046	24.969	25.159	0					7	4	3	0	0	0	0.082776	1	7903	7903		83.647	6.3294	1	108450			44194	2779	29323	29440	44760	44760					0.0441373286076896
TTNDIVISK	9	Unmodified	_TTNDIVISK_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.77667236328125	2	495.776939	989.539325	-0.66843	-0.00033139	0.013733	6.8088E-06	-0.6547	-0.00032459	495.776959277078	25.17	0.22098	25.17	25.06	25.281	0					8	4	2	0	0	0	0.0088974	1	8769	8769		143.37	27.88	1	1261100			44195	2779	29323	29440	44761	44761					0.0441373286076896
TTNLSIQQK	9	Unmodified	_TTNLSIQQK_					0	0	0		SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6;SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant;ENST00000474906.2_1_6:76388527-76407234:+|nuORF	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7880249023438	2	516.787838	1031.56112	0.32519	0.00016805	-0.47103	-0.00024342	-0.14585	-7.5372E-05	517.2889544220254	22.626	0.13932	22.626	22.554	22.694	0					6	4	2	0	0	0	0.24334	1	6419	6419		56.434	6.9922	1	99967			44196	2756	29324	29441	44762	44762					0.04660537609311177
TTNLSIQQK	9	Unmodified	_TTNLSIQQK_					0	0	0		SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6;SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant;ENST00000474906.2_1_6:76388527-76407234:+|nuORF	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.787841796875	2	516.787838	1031.56112	0.040684	2.1025E-05	0.1683	8.6976E-05	0.20898	0.000108	516.7879349623842	22.956	0.2193	22.956	22.874	23.093	0					13	5	3	0	0	0	0.11411	1	7545	7545		76.17	19.736	1	507470			44197	2756	29324	29441	44763	44763					0.04660537609311177
TTNQNVIKK	9	Unmodified	_TTNQNVIKK_					0	0	0		ENSG00000121621|ENST00000263181|KIF18A;KIF18A|p.F80Lfs*23|1|0.23|ENSG00000121621|chr11:28097708-28097708|A/-|frameshift_variant;ENST00000526288.1_1_11:28119059-28119494:-|nuORF;ENST00000533466.1_1_11:28098218-28119398:-|nuORF;KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant	ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3037719726562	2	523.303655	1044.59276	0.088431	4.6276E-05	0.27093	0.00014178	0.35936	0.00018806	523.3036158252512	15.367	0.17652	15.367	15.314	15.49	0					8	4	3	0	0	0	0.016683	1	3958	3958		127.46	5.2857	1	861070			44198	3229	29325	29442	44764	44764					0.07224530363282611
TTNQNVIKK	9	Unmodified	_TTNQNVIKK_					0	0	0		ENSG00000121621|ENST00000263181|KIF18A;KIF18A|p.F80Lfs*23|1|0.23|ENSG00000121621|chr11:28097708-28097708|A/-|frameshift_variant;ENST00000526288.1_1_11:28119059-28119494:-|nuORF;ENST00000533466.1_1_11:28098218-28119398:-|nuORF;KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant	ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.20465087890625	3	349.204862	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.371	1	15.371	14.871	15.871	0								0	0	0	0.3304	1	4189	4189		36.447	2.2742	1				44199	3229	29325	29442	44765	44765					0.07224530363282611
TTNQNVIKK	9	Unmodified	_TTNQNVIKK_					0	0	0		ENSG00000121621|ENST00000263181|KIF18A;KIF18A|p.F80Lfs*23|1|0.23|ENSG00000121621|chr11:28097708-28097708|A/-|frameshift_variant;ENST00000526288.1_1_11:28119059-28119494:-|nuORF;ENST00000533466.1_1_11:28098218-28119398:-|nuORF;KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant	ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3043212890625	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.313	1	15.313	14.813	15.813	0								0	0	0	0.03526	1	4008	4008		93.143	21.266	1				44200	3229	29325	29442	44766	44766					0.07224530363282611
TTPELRVY	8	Unmodified	_TTPELRVY_					0	0	0		ENSG00000176566|ENST00000319675|DCAF4L2	ENSG00000176566|ENST00000319675|DCAF4L2	ENSG00000176566|ENST00000319675|DCAF4L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.766357421875	2	489.766374	977.518196	-0.073075	-3.5789E-05	0.54026	0.0002646	0.46719	0.00022881	489.76645471179944	28.73	0.2141	28.73	28.581	28.795	0					6	4	2	0	0	0	0.59411	1	10577	10577		50.025	3.2581	1	89936			44201	6613	29326	29443	44767	44767					0.02853767551891906
TTPHLGPGL	9	Unmodified	_TTPHLGPGL_					0	0	0		ENST00000562775.1_1_16:89589148-89589352:+|nuORF	ENST00000562775.1_1_16:89589148-89589352:+|nuORF	ENST00000562775.1_1_16:89589148-89589352:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.74786376953125	2	446.747985	891.481417	0.60074	0.00026838	-0.17504	-7.8201E-05	0.4257	0.00019018	446.74714022861923	39.219	0.32043	39.219	39.015	39.336	0					22	11	3	0	0	0	0.30268	1	15413	15413		50.025	7.5501	1	93467			44202	10725	29327	29444	44768	44768					0.03133515726017322
TTPIGQQL	8	Unmodified	_TTPIGQQL_					0	0	0			REV__EPHB3|p.L956Pfs*228|1|0.32|ENSG00000182580|chr3:184581384-184581385|-/C|frameshift_variant	REV__EPHB3|p.L956Pfs*228|1|0.32|ENSG00000182580|chr3:184581384-184581385|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2398986816406	2	429.239993	856.465432	-0.51899	-0.00022277	0.23729	0.00010185	-0.2817	-0.00012092	429.2400615320215	31.869	0.16431	31.869	31.764	31.928	0					5	3	2	0	0	0	0.60719	1	12073	12073		47.916	0	1	92722	+		44203	20643	29328	29445	44769	44769					0.03145809489092244
TTPPPRTTP	9	Unmodified	_TTPPPRTTP_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.26373291015625	2	484.263999	966.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.192	1	34.192	33.692	34.692	0								0	0	0	0.30504	1	11519	11519		34.173	1.3601	1		+		44204	13938	29329	29446	44770	44770					0.028848834091377284
TTPQISPSTL	10	Unmodified	_TTPQISPSTL_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7820434570312	2	522.782222	1043.54989	0.34471	0.00018021	-0.3719	-0.00019442	-0.02719	-1.4214E-05	522.781866341614	31.964	0.56589	31.964	31.751	32.317	0					41	23	2	0	0	0	0.43008	1	10753	10753		52.937	6.4799	1	104790			44205	1886	29330	29447	44771	44771					0.029857155152058112
TTPTSLNIG	9	Unmodified	_TTPTSLNIG_					0	0	0		ENST00000366197.9_1_19:57910793-57911177:+|nuORF;ZNF548|p.F346Lfs*163|1|0.22|ENSG00000188785|chr19:57399320-57399320|T/-|frameshift_variant	ENST00000366197.9_1_19:57910793-57911177:+|nuORF	ENST00000366197.9_1_19:57910793-57911177:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.2426452636719	2	452.242732	902.470912	-1.1941	-0.00054003	1.5696	0.00070985	0.37552	0.00016983	452.24337288883777	23.597	0.25792	23.597	23.515	23.773	0					20	9	3	0	0	0	0.25716	1	7105	7105		54.776	1.8396	1	263750			44206	8890	29331	29448	44772	44772					0.015774882809068913
TTPVSALQY	9	Unmodified	_TTPVSALQY_					0	0	0		IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant;ENSG00000112706|ENST00000369950|IMPG1	IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant	IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2601013183594	2	490.258382	978.502212	2.6522	0.0013003	1.3504	0.00066207	4.0027	0.0019623	490.2590512882646	42.138	0.11695	42.138	42.053	42.17	0					5	3	2	0	0	0	0.41113	1	16803	16803		40.778	7.9657	1	46332			44207	2757	29332	29449	44773	44773					0.012100613149982564
TTQDPLSNK	9	Unmodified	_TTQDPLSNK_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1694Mfs*4|2|0.16|ENSG00000009413|chr6:111373274-111373274|T/-|frameshift_variant;REV3L|p.I1992Lfs*2|1|0.29|ENSG00000009413|chr6:111367814-111367814|T/-|frameshift_variant;REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2564697265625	2	502.256371	1002.49819	-0.044146	-2.2173E-05	-0.50842	-0.00025536	-0.55257	-0.00027753	502.25614190117693	21.459	0.4848	21.459	21.198	21.683	0					28	16	2	0	0	0	0.3269	1	5891	5891		47.96	5.0953	1	158760			44208	1025	29333	29450	44774	44774					-0.0029602817870681974
TTQITYHQ	8	Unmodified	_TTQITYHQ_					0	0	0		ACSS2|p.V143I|1|0.31|ENSG00000131069|chr20:34913148-34913148|G/A|missense_variant;ACSS2|p.P269Qfs*69|1|0.38|ENSG00000131069|chr20:34914403-34914403|C/-|frameshift_variant;ACSS2|p.F518Sfs*17|1|0.05|ENSG00000131069|chr20:34923327-34923334|TCAAGCAG/-|frameshift_variant;ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ACSS2|p.V143I|1|0.31|ENSG00000131069|chr20:34913148-34913148|G/A|missense_variant	ACSS2|p.V143I|1|0.31|ENSG00000131069|chr20:34913148-34913148|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.2457580566406	2	496.245806	990.47706	-1.1976	-0.00059431	0.17904	8.885E-05	-1.0186	-0.00050546	496.24620398990845	29.497	0.24938	29.497	29.404	29.653	0					12	9	2	0	0	0	0.67394	1	9631	9631		37.159	0.13063	1	98536			44209	41	29334	29451	44775	44775					-0.018559934875725048
TTQKEHLLK	9	Unmodified	_TTQKEHLLK_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.548583984375	3	366.548629	1096.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.52	1	16.52	16.02	17.02	0								0	0	0	0.024201	1	4493	4493		104.01	58.991	1				44210	1469	29335	29452	44776	44776					0.0796110339738334
TTQKEHLLK	9	Unmodified	_TTQKEHLLK_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.3193969726562	2	549.319306	1096.62406	0.52533	0.00028857	-0.19395	-0.00010654	0.33138	0.00018203	549.3192219505	16.5	0.16452	16.5	16.401	16.565	0					7	3	3	0	0	0	0.0067848	1	4570	4570		150.36	28.186	1	615510			44211	1469	29335	29452	44777	44777					0.0796110339738334
TTQKEHLLK	9	Unmodified	_TTQKEHLLK_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.5484619140625	3	366.548629	1096.62406	-0.16341	-5.9898E-05	0.081174	2.9754E-05	-0.082236	-3.0143E-05	366.54852067679843	16.506	0.2649	16.506	16.401	16.666	0					10	5	4	0	0	0	0.028876	1	4571	4571		114.89	66.935	1	355310			44212	1469	29335	29452	44778	44778					0.0796110339738334
TTQKLVLEY	9	Unmodified	_TTQKLVLEY_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.8092651367188	2	547.808239	1093.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.19	1	37.19	36.69	37.69	0								0	0	0	0.34845	1	12188	12188		25.574	1.3713	1				44213	4116	29336	29453	44779	44779					0.05886878928936312
TTQKLVLEY	9	Unmodified	_TTQKLVLEY_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.8084106445312	2	547.808239	1093.60193	0.4727	0.00025895	0.055661	3.0492E-05	0.52836	0.00028944	547.8083142138718	37.522	0.1841	37.522	37.415	37.599	0					11	5	3	0	0	0	0.11898	1	14220	14220		75.043	12.936	1	261490			44214	4116	29336	29453	44780	44780					0.05886878928936312
TTQKLVLEY	9	Unmodified	_TTQKLVLEY_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.8087768554688	2	547.808239	1093.60193	0.4247	0.00023266	0.94435	0.00051732	1.3691	0.00074998	547.8087193865694	37.268	0.139	37.268	37.206	37.345	0					11	7	2	0	0	0	0.36892	1	12608	12608		44.377	12.422	1	77682			44215	4116	29336	29453	44781	44781					0.05886878928936312
TTQKLVLEY	9	Unmodified	_TTQKLVLEY_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.8084106445312	2	547.808239	1093.60193	1.8072	0.00098998	-1.0991	-0.00060209	0.70808	0.00038789	547.8077037202659	37.461	0.24196	37.461	37.387	37.629	0					16	7	3	0	0	0	0.078509	1	14647	14647		85.161	42.765	1	437560			44216	4116	29336	29453	44782	44782					0.05886878928936312
TTQKLVLEY	9	Unmodified	_TTQKLVLEY_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.8079833984375	2	547.808239	1093.60193	-1.5057	-0.00082483	3.3196	0.0018185	1.8139	0.00099367	547.8096739339935	37.254	0.1861	37.254	37.185	37.371	0					11	9	2	0	0	0	0.15558	1	13340	13340		66.962	20.99	1	45038			44217	4116	29336	29453	44783	44783					0.05886878928936312
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.78759765625	2	512.787307	1023.56006	1.2212	0.0006262	-0.41243	-0.00021149	0.80874	0.00041471	512.7871000602444	37.724	0.23102	37.724	37.618	37.849	0					30	13	3	0	0	0	0.22823	1	12328	12328		58.246	20.435	1	311210			44218	7608	29337	29454	44784	44784					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7880249023438	2	512.787307	1023.56006	-0.27724	-0.00014216	0.10784	5.53E-05	-0.16939	-8.6863E-05	512.7878284543408	37.787	0.51348	37.787	37.407	37.921	0					61	28	3	0	0	0	0.070005	1	12754	12754		88.177	16.299	1	198320			44219	7608	29337	29454	44785	44785					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.788330078125	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.968	1	37.968	37.468	38.468	0								0	0	0	0.018495	1	14877	14877		101.46	2.8305	1				44220	7608	29337	29454	44786	44786					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7876586914062	2	512.787307	1023.56006	0.93831	0.00048115	0.18312	9.3899E-05	1.1214	0.00057505	512.7873390559139	37.777	0.22203	37.777	37.693	37.915	0					19	10	3	0	0	0	0.13726	1	13503	13503		70.816	16.052	1	186060			44221	7608	29337	29454	44787	44787					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.2886352539062	2	512.787307	1023.56006	0.4977	0.00025521	-0.60859	-0.00031208	-0.11089	-5.6866E-05	512.7873415873429	37.768	0.58595	37.768	37.371	37.957	0					55	28	3	0	0	0	0.18416	1	13501	13501		63.534	10.597	1	387740			44222	7608	29337	29454	44788	44788					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.787353515625	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.88	1	37.88	37.38	38.38	0								0	0	0	0.0053097	1	14847	14847		114.86	37.541	1				44223	7608	29337	29454	44789	44789					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7874755859375	2	512.787307	1023.56006	1.4381	0.00073744	-1.9983	-0.0010247	-0.56021	-0.00028727	512.7869397085028	37.927	0.86663	37.927	37.4	38.267	0					58	18	5	0	0	0	0.01077	1	14863	14863		139.38	40.753	1	3846900			44224	7608	29337	29454	44790	44790					0.04922323240418791
TTQRLNATV	9	Unmodified	_TTQRLNATV_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ADGRG4|p.D2874Rfs*16|1|0.45|ENSG00000156920|chrX:136403281-136403282|-/A|frameshift_variant;ADGRG4|p.F2955Vfs*21|1|0.32|ENSG00000156920|chrX:136405894-136405895|-/G|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant;ADGRG4|p.N1783Kfs*3|1|0.45|ENSG00000156920|chrX:136349048-136349049|-/A|frameshift_variant;ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.3072509765625	2	502.28018	1002.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.911	1	17.911	17.411	18.411	0								0	0	0	0.1633	1	5140	5140		56.721	1.9447	1				44225	78	29338	29455	44791	44791					0.04463670812128839
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	604.3490600585938	2	604.348929	1206.6833	0.14807	8.9489E-05	0.59448	0.00035927	0.74255	0.00044876	604.3491240632804	17.295	0.10322	17.295	17.229	17.332	0					6	3	2	0	0	0	0.16075	1	4089	4089		72.879	5.3856	1	154120			44226	346	29339	29456	44792	44792					0.08822999411563615
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.235107421875	3	403.235045	1206.6833	0.95516	0.00038515	-0.87153	-0.00035143	0.083628	3.3722E-05	403.2346504109256	17.622	0.16815	17.622	17.539	17.708	0					10	4	3	0	0	0	0.50287	1	5017	5017		45.022	8.5755	1	573510			44227	346	29339	29456	44793	44793					0.08822999411563615
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.34912109375	2	604.348929	1206.6833	-0.42005	-0.00025386	0.86397	0.00052214	0.44392	0.00026828	604.3493588539528	17.616	0.20736	17.616	17.527	17.735	0					12	5	3	0	0	0	0.026945	1	5006	5006		98.582	15.832	1	916460			44228	346	29339	29456	44794	44794					0.08822999411563615
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	403.2352600097656	3	403.235045	1206.6833	-1.3529	-0.00054554	1.7869	0.00072055	0.43403	0.00017502	403.23576090581855	17.357	0.11143	17.357	17.307	17.418	0					8	4	3	0	0	0	0.536	1	4334	4334		41.427	1.5535	1	99446			44229	346	29339	29456	44795	44795					0.08822999411563615
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.2350158691406	3	403.235045	1206.6833	0.96506	0.00038915	-1.1692	-0.00047145	-0.20412	-8.2307E-05	403.23461414912106	17.592	0.31652	17.592	17.435	17.751	0					17	6	4	0	0	0	0.31894	1	5261	5261		65.157	20.135	1	1638900			44230	346	29339	29456	44796	44796					0.08822999411563615
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	403.5699462890625	3	403.235045	1206.6833	-0.1192	-4.8066E-05	1.1274	0.0004546	1.0082	0.00040653	403.57002662245225	17.382	0.084507	17.382	17.335	17.42	0					4	2	2	0	0	0	0.17315	1	4332	4332		82.75	36.294	1	90801			44231	346	29339	29456	44797	44797					0.08822999411563615
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.3492431640625	2	604.348929	1206.6833	-1.9071	-0.0011526	2.4807	0.0014992	0.5736	0.00034666	604.3503083558934	17.369	0.11724	17.369	17.294	17.411	0					5	3	2	0	0	0	0.24594	1	4323	4323		61.691	8.3398	1	130590			44232	346	29339	29456	44798	44798					0.08822999411563615
TTQRPLHINK	10	Unmodified	_TTQRPLHINK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.2349548339844	3	403.235045	1206.6833	0.57257	0.00023088	-1.4931	-0.00060207	-0.92052	-0.00037119	403.23480480551416	17.547	0.37089	17.547	17.363	17.734	0					27	7	6	0	0	0	0.08194	1	5085	5085		98.582	33.117	1	1786100			44233	346	29339	29456	44799	44799					0.08822999411563615
TTQRTGRARQW	11	Unmodified	_TTQRTGRARQW_					0	0	0			REV__ENST00000577174.1_1_16:10935241-10935388:-|nuORF	REV__ENST00000577174.1_1_16:10935241-10935388:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.24530029296875	3	454.244603	1359.71198	0.72121	0.00032761	0.59152	0.0002687	1.3127	0.0005963	454.2449361329404	24.044	0.71467	24.044	23.847	24.561	0					37	14	4	0	0	0	0.55968	1	8355	8355		39.873	1.1591	1	4769300	+		44234	20423	29340	29457	44800	44800					0.04651117040702957
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.799560546875	2	479.800217	957.585882	0.028785	1.3811E-05	-0.26889	-0.00012902	-0.24011	-0.0001152	479.8001052237352	32.45	0.18881	32.45	32.375	32.563	0					19	8	3	0	0	0	0.11411	1	10488	10488		76.17	12.636	1	282730			44235	7635	29341	29458	44801	44801					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.8000793457031	2	479.800217	957.585882	0.48361	0.00023204	-0.81109	-0.00038916	-0.32748	-0.00015713	479.79982259853796	32.789	0.49089	32.789	32.668	33.159	0					28	13	4	0	0	0	0.076532	1	12047	12047		85.862	10.819	1	1611700			44236	7635	29341	29458	44802	44802					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.80078125	2	479.800217	957.585882	-0.11263	-5.4041E-05	-0.27094	-0.00013	-0.38357	-0.00018404	479.80003114612856	32.693	0.42586	32.693	32.61	33.036	0					22	10	4	0	0	0	0.035106	1	12441	12441		104.01	35.227	1	870960			44237	7635	29341	29458	44803	44803					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.80029296875	2	479.800217	957.585882	0.035866	1.7209E-05	-0.25085	-0.00012036	-0.21499	-0.00010315	479.80008815752524	32.525	0.19577	32.525	32.428	32.623	0					16	6	3	0	0	0	0.25761	1	11297	11297		54.722	11.858	1	286080			44238	7635	29341	29458	44804	44804					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7998046875	2	479.800217	957.585882	-0.30813	-0.00014784	0.42978	0.00020621	0.12165	5.8368E-05	479.80025613745056	32.508	0.22186	32.508	32.417	32.639	0					14	7	3	0	0	0	0.25761	1	11304	11304		54.722	7.065	1	244710			44239	7635	29341	29458	44805	44805					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.8002014160156	2	479.800217	957.585882	-0.65155	-0.00031261	0.28439	0.00013645	-0.36716	-0.00017617	479.8002591018479	32.687	0.31858	32.687	32.573	32.892	0					20	6	4	0	0	0	0.17062	1	12338	12338		65.157	10.435	1	1308200			44240	7635	29341	29458	44806	44806					0.10539217482710228
TTRASRPLSSA	11	Unmodified	_TTRASRPLSSA_					0	0	0			REV__ENST00000480925.1_1_9:100819070-100819196:+|nuORF	REV__ENST00000480925.1_1_9:100819070-100819196:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.816162109375	2	573.814919	1145.61528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.972	1	41.972	41.472	42.472	0								0	0	0	0.44488	1	16492	16492		27.047	2.5281	1		+		44241	19595	29342	29459	44807	44807					0.048301297608986715
TTRGGFRL	8	Unmodified	_TTRGGFRL_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.25848388671875	2	454.259051	906.503549	0.24904	0.00011313	-1.5077	-0.00068488	-1.2586	-0.00057175	454.2582829870009	18.495	0.11384	18.495	18.415	18.529	0					5	3	2	0	0	0	0.72381	1	4846	4846		30.504	6.3009	1	105050	+		44242	13636	29343	29460	44808	44808					0.046557401944255616
TTRIFCMGK	9	Unmodified	_TTRIFCMGK_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7720947265625	2	528.77008	1055.52561	3.4598	0.0018294	0.29195	0.00015437	3.7517	0.0019838	528.770176151506	39.6	0.54716	39.6	39.455	40.002	0					29	12	3	0	0	0	0.19605	1	15648	15648		62.107	5.3864	1	4542300	+		44243	12871	29344	29461	44809	44809					6.460556301135512E-05
TTRPRDSH	8	Unmodified	_TTRPRDSH_					0	0	0		nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.24761962890625	2	485.246672	968.478791	-0.090317	-4.3826E-05	4.1764	0.0020266	4.0861	0.0019827	485.2483329817882	23.899	0.2664	23.899	23.762	24.029	0					14	5	4	0	0	0	0.67394	1	8294	8294		37.159	5.2042	1	196540			44244	5714	29345	29462	44810	44810					-0.0067093967895743845
TTSAKTTMK	9	Unmodified	_TTSAKTTMK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7575378417969	2	484.757692	967.500831	-0.092976	-4.5071E-05	-0.32713	-0.00015858	-0.4201	-0.00020365	484.7578943875189	13.033	0.099378	13.033	12.942	13.041	0					6	2	3	0	0	0	0.026848	1	3068	3068		112.11	35.333	1	197540			44245	6636	29346	29463	44811	44811					0.015781039545800013
TTSAKTTMK	9	Unmodified	_TTSAKTTMK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.75811767578125	2	484.757692	967.500831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.004	1	13.004	12.504	13.504	0								0	0	0	0.0537	1	2912	2912		85.161	10.906	1				44246	6636	29346	29463	44812	44812					0.015781039545800013
TTSFLALSQ	9	Unmodified	_TTSFLALSQ_					0	0	0		ENSG00000170234|ENST00000307063|PWWP2A	ENSG00000170234|ENST00000307063|PWWP2A	ENSG00000170234|ENST00000307063|PWWP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.25811767578125	2	484.258382	966.502212	0.3292	0.00015942	-0.81442	-0.00039439	-0.48521	-0.00023497	484.25807519582105	27.771	0.18653	27.771	27.676	27.862	0					6	4	2	0	0	0	0.16002	1	9750	9750		66.429	2.222	1	107860			44247	6218	29347	29464	44813	44813					0.017620613149915698
TTSHYGQL	8	Unmodified	_TTSHYGQL_					0	0	0		MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|20|3|sense	MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|20|3|sense	MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|20|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.7191467285156	2	453.719424	905.424296	-0.55012	-0.0002496	0.080864	3.6689E-05	-0.46925	-0.00021291	453.7194439208835	24.45	0.27428	24.45	24.34	24.615	0					16	6	4	0	0	0	0.29152	1	8239	8239		85.359	3.0545	1	1541800			44248	11363	29348	29465	44814	44814					-0.032199515503748444
TTSIQLQL	8	Unmodified	_TTSIQLQL_					0	0	0			REV__nc|ENSG00000117859|Q96SU4-6|OSBPL9	REV__nc|ENSG00000117859|Q96SU4-6|OSBPL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.26019287109375	2	452.260925	902.507297	-0.38426	-0.00017378	-0.24068	-0.00010885	-0.62493	-0.00028263	452.26091666208913	30.342	0.34146	30.342	30.249	30.59	0					15	7	3	0	0	0	0.34985	1	11321	11321		76.847	0	1	821800	+		44249	20990	29349	29466	44815	44815					0.052143651776077604
TTSNFTFSK	9	Unmodified	_TTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7539672851562	2	516.753464	1031.49238	1.3484	0.00069679	-0.68665	-0.00035483	0.66175	0.00034196	516.753107439325	28.951	0.25648	28.951	28.88	29.136	0					20	9	3	0	0	0	0.04067	1	9084	9084		98.582	29.795	1	320880			44250	5357	29350	29467	44816	44816					-0.022111266903721116
TTSNFTFSK	9	Unmodified	_TTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.753662109375	2	516.753464	1031.49238	1.2663	0.00065437	-1.4077	-0.00072741	-0.14136	-7.3049E-05	516.7528937876388	29.209	0.409	29.209	29.087	29.496	0					32	10	4	0	0	0	0.013298	1	10402	10402		133.99	40.798	1	2842400			44251	5357	29350	29467	44817	44817					-0.022111266903721116
TTSNFTFSK	9	Unmodified	_TTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.7537231445312	2	516.753464	1031.49238	0.91726	0.000474	-0.72554	-0.00037493	0.19172	9.9074E-05	516.7532008206163	29.228	0.27941	29.228	29.116	29.396	0					16	6	3	0	0	0	0.021035	1	10805	10805		120.27	35.357	1	287300			44252	5357	29350	29467	44818	44818					-0.022111266903721116
TTSNFTFSK	9	Unmodified	_TTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.753662109375	2	516.753464	1031.49238	1.4902	0.00077005	-0.16977	-8.7728E-05	1.3204	0.00068232	516.7531507758621	29.24	0.71424	29.24	29.104	29.818	0					33	15	3	0	0	0	0.061298	1	10798	10798		91.265	27.058	1	1105100			44253	5357	29350	29467	44819	44819					-0.022111266903721116
TTSNFTFSK	9	Unmodified	_TTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7543334960938	2	516.753464	1031.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.008	1	29.008	28.508	29.508	0								0	0	0	0.039046	1	9705	9705		91.265	27.058	1				44254	5357	29350	29467	44820	44820					-0.022111266903721116
TTSNFTFSK	9	Unmodified	_TTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7535400390625	2	516.753464	1031.49238	0.82735	0.00042753	-0.53477	-0.00027634	0.29258	0.00015119	516.753183467022	29.017	0.25846	29.017	28.923	29.181	0					17	7	3	0	0	0	0.032383	1	9699	9699		106.68	40.254	1	382200			44255	5357	29350	29467	44821	44821					-0.022111266903721116
TTSNFTFSK	9	Unmodified	_TTSNFTFSK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;MCM3AP|p.K492Efs*5|1|0.29|ENSG00000160294|chr21:46280545-46280546|-/C|frameshift_variant	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7534790039062	2	516.753464	1031.49238	0.20406	0.00010545	-0.73165	-0.00037808	-0.52759	-0.00027264	516.753270939792	29.166	0.36479	29.166	29.059	29.424	0					26	7	4	0	0	0	0.0051572	1	10641	10641		157.34	75.04	1	3042000			44256	5357	29350	29467	44822	44822					-0.022111266903721116
TTSRTSWE	8	Unmodified	_TTSRTSWE_					0	0	0		TAX1BP1|p.T157Nfs*34|1|0.64|ENSG00000106052|chr7:27769687-27769688|-/A|frameshift_variant	TAX1BP1|p.T157Nfs*34|1|0.64|ENSG00000106052|chr7:27769687-27769688|-/A|frameshift_variant	TAX1BP1|p.T157Nfs*34|1|0.64|ENSG00000106052|chr7:27769687-27769688|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2283020019531	2	484.227613	966.440674	0.66828	0.0003236	-0.48773	-0.00023617	0.18055	8.7425E-05	484.22749411190364	11.545	0.081812	11.545	11.506	11.588	0					4	2	2	0	0	0	0.58597	1	2399	2399		51.335	5.3835	1	82797			44257	22513	29351	29468	44823	44823					-0.043888703842753785
TTSSPEKWP	9	Unmodified	_TTSSPEKWP_					0	0	0		FOXI1|p.R267W|1|0.27|ENSG00000168269|chr5:170108273-170108273|C/T|missense_variant	FOXI1|p.R267W|1|0.27|ENSG00000168269|chr5:170108273-170108273|C/T|missense_variant	FOXI1|p.R267W|1|0.27|ENSG00000168269|chr5:170108273-170108273|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7540283203125	2	516.753464	1031.49238	-0.014006	-7.2378E-06	0.2584	0.00013353	0.2444	0.00012629	516.7535621226698	28.994	0.20528	28.994	28.908	29.114	0					10	8	2	0	0	0	0.4966	1	9382	9382		32.812	3.6424	1	246990			44258	11143	29352	29469	44824	44824					-0.022111266903721116
TTSSTTTTTI	10	Unmodified	_TTSSTTTTTI_					0	0	0		nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3;nc|ENSG00000173889|Q8NDX5-6|PHC3;nc|ENSG00000173889|Q8NDX5-5|PHC3;nc|ENSG00000173889|Q8NDX5-4|PHC3;ENST00000474275.5_1_3:169866840-169896704:-|nuORF;PHC3|p.T183Hfs*12|1|0.07|ENSG00000173889|chr3:170145513-170145514|-/A|frameshift_variant;nc|ENSG00000173889|Q8NDX5-3|PHC3;PHC3|p.Q449Sfs*2|1|0.36|ENSG00000173889|chr3:170129091-170129091|G/-|frameshift_variant	nc|ENSG00000173889|Q8NDX5-2|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.25244140625	2	507.253494	1012.49243	-1.9212	-0.00097455	-0.7303	-0.00037045	-2.6515	-0.001345	507.2532485487847	35.596	0.34593	35.596	35.488	35.834	0					32	13	4	0	0	0	0.32758	1	12683	12683		64.207	64.207	1	505720			44259	6456	29353	29470	44825	44825					-0.013311714810356534
TTSTWLRS	8	Unmodified	_TTSTWLRS_					0	0	0			REV__ENST00000264705.8_1_2:27447237-27447342:+|nuORF	REV__ENST00000264705.8_1_2:27447237-27447342:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2484130859375	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.422	1	28.422	27.922	28.922	0								0	0	0	1.7419	1	8878	8878		39.253	4.0521	1		+		44260	18061	29354	29471	44826	44826					0.004923103750456903
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.3000793457031	2	481.30005	960.585547	1.0941	0.00052661	-0.59853	-0.00028807	0.49561	0.00023854	481.29976110064985	32.82	0.29097	32.82	32.71	33.001	0					20	11	3	0	0	0	0.0059092	1	10619	10619		154.12	50.062	1	297200			44261	7571	29355	29472	44827	44827					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.3005676269531	2	481.30005	960.585547	0.040088	1.9294E-05	-0.098869	-4.7586E-05	-0.058781	-2.8291E-05	481.29997907015576	32.818	0.19037	32.818	32.731	32.922	0					16	7	3	0	0	0	0.25716	1	10624	10624		54.776	13.998	1	194920			44262	7571	29355	29472	44828	44828					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2996520996094	2	481.30005	960.585547	0.40065	0.00019283	-0.76503	-0.00036821	-0.36438	-0.00017537	481.2996309949249	33.103	0.33355	33.103	32.994	33.327	0					29	9	5	0	0	0	0.00324	1	12203	12203		167.23	68.599	1	2488500			44263	7571	29355	29472	44829	44829					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2998962402344	2	481.30005	960.585547	0.53243	0.00025626	-0.5544	-0.00026683	-0.021973	-1.0576E-05	481.29972136853	33.11	0.29176	33.11	33.019	33.31	0					18	8	3	0	0	0	0.15163	1	12214	12214		67.494	5.3863	1	1112400			44264	7571	29355	29472	44830	44830					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2998046875	2	481.30005	960.585547	-0.10669	-5.1352E-05	-0.31892	-0.0001535	-0.42562	-0.00020485	481.2998649183843	33.071	0.4862	33.071	32.932	33.418	0					31	11	5	0	0	0	0.0059092	1	12614	12614		154.12	66.422	1	6171600			44265	7571	29355	29472	44831	44831					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.2998352050781	2	481.30005	960.585547	0.1125	5.4144E-05	-0.48105	-0.00023153	-0.36855	-0.00017738	481.29982248930816	32.843	0.31931	32.843	32.738	33.057	0					17	8	3	0	0	0	0.022525	1	11466	11466		117.81	30.115	1	546390			44266	7571	29355	29472	44832	44832					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.2997741699219	2	481.30005	960.585547	-0.62862	-0.00030256	0.87817	0.00042266	0.24955	0.00012011	481.3003891822762	33.066	0.43932	33.066	32.926	33.365	0					25	9	4	0	0	0	0.0012088	1	12517	12517		180.87	70.75	1	4116100			44267	7571	29355	29472	44833	44833					0.1036779776285357
TTSVPKVYY	9	Unmodified	_TTSVPKVYY_					0	0	0			REV__nc|ENSG00000095261|Q16401-2|PSMD5	REV__nc|ENSG00000095261|Q16401-2|PSMD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2822875976562	2	529.281857	1056.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.413	1	43.413	42.913	43.913	0								0	0	0	0.35507	1	16377	16377		24.203	1.1603	1		+		44268	13467	29356	29473	44834	44834					0.02314920866160719
TTSVRKLIL	9	Unmodified	_TTSVRKLIL_					0	0	0		nc|ENSG00000240891|Q0VAA5-2|PLCXD2;nc|ENSG00000240891|Q0VAA5|PLCXD2;ENSG00000240891|ENST00000636933|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.22479248046875	3	344.225486	1029.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27	1	27	26.5	27.5	0								0	0	0	0.38667	1	8554	8554		14.865	0.72775	1				44269	7936	29357	29474	44835	44835					0.14098881782433637
TTTADIDDE	9	Unmodified	_TTTADIDDE_					0	0	0			REV__JPH3|p.T482Pfs*127|1|0.4|ENSG00000154118|chr16:87689800-87689800|C/-|frameshift_variant	REV__JPH3|p.T482Pfs*127|1|0.4|ENSG00000154118|chr16:87689800-87689800|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7067565917969	2	490.706377	979.3982	0.78649	0.00038594	-0.021297	-1.045E-05	0.76519	0.00037548	490.7064173590849	20.537	0.36686	20.537	20.427	20.793	0					19	7	4	0	0	0	0.43426	1	6549	6549		38.806	0	1	1919300	+		44270	15557	29358	29475	44836	44836					-0.09232310303184477
TTTATATPK	9	Unmodified	_TTTATATPK_					0	0	0		ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.2426452636719	2	446.242732	890.470912	-0.15874	-7.0834E-05	-0.044724	-1.9958E-05	-0.20346	-9.0792E-05	446.2427593677654	14.655	0.35435	14.655	14.508	14.862	0					11	7	3	0	0	0	0.085655	1	3861	3861		82.75	3.2995	1	332830			44271	8304	29359	29476	44837	44837					0.021294882809002047
TTTATATPK	9	Unmodified	_TTTATATPK_					0	0	0		ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	ENST00000262126.8_1_18:9136811-9136937:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2427978515625	2	446.242732	890.470912	-0.44441	-0.00019831	0.3877	0.00017301	-0.056704	-2.5304E-05	446.2429354982241	14.617	0.22002	14.617	14.508	14.728	0					9	4	3	0	0	0	0.10915	1	3690	3690		77.318	19.506	1	253400			44272	8304	29359	29476	44838	44838					0.021294882809002047
TTTATTTLETL	11	Unmodified	_TTTATTTLETL_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.8716125488281	3	384.871326	1151.59215	0.22508	8.6628E-05	0.90744	0.00034925	1.1325	0.00043587	384.87163017704427	17.794	0.47142	17.794	17.684	18.156	0					11	9	2	0	0	0	0.44025	1	5361	5361		48.602	6.2635	1	885980	+		44273	14209	29360	29477	44839	44839					0.02241646132938513
TTTFLTGII	9	Unmodified	_TTTFLTGII_					0	0	0		ENST00000486155.1_1_6:35928714-35992326:-|nuORF;SLC26A8|p.N595Tfs*4|1|0.04|ENSG00000112053|chr6:35959539-35959540|-/G|frameshift_variant;SLC26A8|p.F647Lfs*4|1|0.31|ENSG00000112053|chr6:35955443-35955443|A/-|frameshift_variant;nc|ENSG00000112053|Q96RN1-4|SLC26A8;SLC26A8|p.N842Mfs*2|1|0.8|ENSG00000112053|chr6:35944288-35944288|T/-|frameshift_variant;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8	ENST00000486155.1_1_6:35928714-35992326:-|nuORF	ENST00000486155.1_1_6:35928714-35992326:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7769470214844	2	483.778951	965.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.624	1	12.624	12.124	13.124	0								0	0	0	0.1836	1	2731	2731		53.351	7.3792	1				44274	2713	29361	29478	44840	44840					0.059198223544854045
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2887573242188	2	517.287474	1032.5604	1.3662	0.00070671	-0.61299	-0.00031709	0.7532	0.00038962	517.2871499456571	21.582	0.2985	21.582	21.484	21.782	0					23	10	4	0	0	0	0.07136	1	5940	5940		87.696	45.3	1	1141600			44275	5177	29362	29479	44841	44841					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.1940002441406	3	345.194075	1032.5604	0.50396	0.00017396	-0.8339	-0.00028786	-0.32994	-0.00011389	345.1937885213479	21.906	0.35305	21.906	21.766	22.119	0					18	8	3	0	0	0	0.45358	1	7021	7021		52.937	29.894	1	1110500			44276	5177	29362	29479	44842	44842					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	345.1938781738281	3	345.194075	1032.5604	-0.70261	-0.00024254	0.49756	0.00017175	-0.20506	-7.0784E-05	345.19414320399824	21.596	0.24371	21.596	21.502	21.746	0					12	7	2	0	0	0	0.5879	1	6229	6229		37.812	26.715	1	364530			44277	5177	29362	29479	44843	44843					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2879028320312	2	517.287474	1032.5604	0.97587	0.00050481	-0.7051	-0.00036474	0.27077	0.00014007	517.2870025074278	21.784	0.56225	21.784	21.625	22.187	0					36	11	5	0	0	0	0.055856	1	7264	7264		93.195	37.691	1	7452600			44278	5177	29362	29479	44844	44844					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.287841796875	2	517.287474	1032.5604	1.2109	0.00062636	-0.74393	-0.00038482	0.46693	0.00024153	517.2870310616393	21.649	0.3035	21.649	21.584	21.888	0					17	7	4	0	0	0	0.063823	1	6303	6303		90.37	47.974	1	648190			44279	5177	29362	29479	44845	44845					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2877807617188	2	517.287474	1032.5604	0.86856	0.0004493	-0.72447	-0.00037476	0.14409	7.4535E-05	517.28703963778	21.677	0.20319	21.677	21.572	21.776	0					8	5	2	0	0	0	0.047412	1	6314	6314		96.19	40.686	1	411330			44280	5177	29362	29479	44846	44846					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2875366210938	2	517.287474	1032.5604	0.2223	0.00011499	-0.099913	-5.1684E-05	0.12239	6.331E-05	517.2873596144246	21.798	0.81802	21.798	21.687	22.505	0					44	16	5	0	0	0	0.028876	1	7139	7139		110.12	45.913	1	9543900			44281	5177	29362	29479	44847	44847					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant;EEF1A2|p.T239Hfs*50|1|0.26|ENSG00000101210|chr20:63493194-63493195|-/G|frameshift_variant;EEF1A2|p.T239Rfs*40|1|0.31|ENSG00000101210|chr20:63493195-63493195|G/-|frameshift_variant	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.28759765625	2	517.287474	1032.5604	1.552	0.00080283	-0.7386	-0.00038207	0.81341	0.00042077	517.2870671477411	21.786	0.21506	21.786	21.721	21.936	0					7	4	3	0	0	0	0.028876	1	7152	7152		110.12	64.148	1	1184100			44282	5177	29362	29479	44848	44848					0.04541742960304873
TTTKRTGIP	9	Unmodified	_TTTKRTGIP_					0	0	0		SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant;SPECC1|p.N303Hfs*14|1|0.23|ENSG00000128487|chr17:20204950-20204951|AA/-|frameshift_variant;SPECC1|p.N303Tfs*63|7|0.29|ENSG00000128487|chr17:20204950-20204950|A/-|frameshift_variant;nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant	SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7847900390625	2	487.785099	973.555644	0.39849	0.00019438	-0.62046	-0.00030265	-0.22198	-0.00010828	487.7845421289018	19.458	0.13461	19.458	19.373	19.508	0					7	3	3	0	0	0	0.047412	1	5867	5867		96.19	11.275	1	265880			44283	3542	29363	29480	44849	44849					0.06780858817523949
TTTKRTGIP	9	Unmodified	_TTTKRTGIP_					0	0	0		SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant;SPECC1|p.N303Hfs*14|1|0.23|ENSG00000128487|chr17:20204950-20204951|AA/-|frameshift_variant;SPECC1|p.N303Tfs*63|7|0.29|ENSG00000128487|chr17:20204950-20204950|A/-|frameshift_variant;nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant	SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.78515625	2	487.785099	973.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.378	1	19.378	18.878	19.878	0								0	0	0	0.1633	1	5978	5978		56.721	23.205	1				44284	3542	29363	29480	44850	44850					0.06780858817523949
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2745361328125	2	502.274564	1002.53457	-0.044663	-2.2433E-05	-0.41733	-0.00020962	-0.462	-0.00023205	502.27435220123925	14.682	0.15487	14.682	14.621	14.776	0					15	6	3	0	0	0	0.026848	1	3052	3052		107.01	44.9	1	3478100			44285	1630;9658;1676	29364	29481	44851	44851					0.03340848718005418
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.27423095703125	2	502.274564	1002.53457	-0.072505	-3.6417E-05	0.85221	0.00042804	0.7797	0.00039162	502.27507936557237	14.976	0.47841	14.976	14.891	15.369	0					24	11	4	0	0	0	0.0071744	1	3758	3758		145.16	35.036	1	18751000			44286	1630;9658;1676	29364	29481	44852	44852					0.03340848718005418
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.1855163574219	3	335.185468	1002.53457	0.51828	0.00017372	-0.29718	-9.961E-05	0.2211	7.4111E-05	335.18535907302476	14.976	0.22611	14.976	14.891	15.117	0					9	5	2	0	0	0	0.40353	1	3777	3777		41.427	0	1	1522200			44287	1630;9658;1676	29364	29481	44853	44853					0.03340848718005418
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.27447509765625	2	502.274564	1002.53457	-0.95048	-0.0004774	0.66482	0.00033392	-0.28565	-0.00014348	502.274874093505	14.695	0.18907	14.695	14.636	14.825	0					21	8	4	0	0	0	0.022698	1	3219	3219		112.41	40.533	1	1958700			44288	1630;9658;1676	29364	29481	44854	44854					0.03340848718005418
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.27435302734375	2	502.274564	1002.53457	-0.5369	-0.00026967	0.27816	0.00013971	-0.25874	-0.00012996	502.2747038329689	14.968	0.26558	14.968	14.813	15.079	0					12	5	3	0	0	0	0.010427	1	3984	3984		136.27	48.572	1	9372200			44289	1630;9658;1676	29364	29481	44855	44855					0.03340848718005418
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	335.18536376953125	3	335.185468	1002.53457	-1.9074	-0.00063932	1.8406	0.00061695	-0.066725	-2.2365E-05	335.18597894618335	14.735	0.081757	14.735	14.674	14.756	0					4	2	2	0	0	0	0.58342	1	3178	3178		23.523	0	1	78163			44290	1630;9658;1676	29364	29481	44856	44856					0.03340848718005418
TTTTTSVKK	9	Unmodified	_TTTTTSVKK_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7763366699219	2	483.776939	965.539325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.658	1	12.658	12.158	13.158	0								0	0	0	0.12601	1	2902	2902		65.465	16.024	1				44291	2251	29365	29482	44857	44857					0.05517732860766955
TTTVEKTK	8	Unmodified	_TTTVEKTK_					0	0	0			REV__ENST00000498106.1_1_7:30085848-30088836:+|nuORF	REV__ENST00000498106.1_1_7:30085848-30088836:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.2580871582031	2	454.258382	906.502212	0.72118	0.0003276	-1.1295	-0.00051308	-0.40831	-0.00018548	454.2577880141781	18.652	0.11633	18.652	18.595	18.711	0					8	2	4	0	0	0	0.49216	1	5773	5773		60.972	0	1	1769700	+		44292	13810	29366	29483	44858	44858					0.045220613150036115
TTVAVAMGK	9	Unmodified	_TTVAVAMGK_					0	0	0		ENSG00000100726|ENST00000262319|TELO2;ENST00000568240.1_1_16:1556929-1559934:+|nuORF	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.24444580078125	2	439.244221	876.473888	-0.015909	-6.9879E-06	-0.36242	-0.00015919	-0.37833	-0.00016618	439.24417248878405	24.635	0.14136	24.635	24.545	24.687	0					5	3	2	0	0	0	0.019882	1	8309	8309		122.18	50.798	1	61973			44293	2060	29367	29484	44859	44859					0.030710401340684257
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.5413513183594	3	363.541475	1087.60259	0.46373	0.00016859	-0.68645	-0.00024955	-0.22272	-8.0967E-05	363.5411644739616	23.11	0.27575	23.11	23.033	23.309	0					23	8	4	0	0	0	0.38666	1	6624	6624		42.864	2.0861	1	1197800			44294	5260	29368	29485	44860	44860					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8087158203125	2	544.808574	1087.60259	0.38167	0.00020794	-1.2003	-0.00065391	-0.8186	-0.00044598	544.808171156842	23.442	0.18604	23.442	23.34	23.526	0					11	4	3	0	0	0	0.28504	1	7772	7772		52.937	12.159	1	368050			44295	5260	29368	29485	44861	44861					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.8080444335938	2	544.808574	1087.60259	-0.21758	-0.00011854	0.42924	0.00023385	0.21166	0.00011531	544.808698760562	23.173	0.31365	23.173	23.081	23.395	0					22	10	3	0	0	0	0.25761	1	6904	6904		56.721	17.915	1	778980			44296	5260	29368	29485	44862	44862					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.80908203125	2	544.808574	1087.60259	0.32765	0.00017851	0.39578	0.00021562	0.72343	0.00039413	544.8087426574597	23.387	0.76646	23.387	23.279	24.045	0					36	15	4	0	0	0	0.0055674	1	8036	8036		139.97	70.343	1	7131300			44297	5260	29368	29485	44863	44863					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.5414733886719	3	363.541475	1087.60259	0.38312	0.00013928	-0.64555	-0.00023469	-0.26243	-9.5405E-05	363.541215319643	23.227	0.36651	23.227	23.136	23.502	0					18	8	4	0	0	0	0.25761	1	7041	7041		54.722	16.911	1	1073200			44298	5260	29368	29485	44864	44864					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.54144287109375	3	363.541475	1087.60259	-0.092021	-3.3454E-05	-0.32887	-0.00011956	-0.42089	-0.00015301	363.541400597648	23.344	1.0607	23.344	23.235	24.295	0					58	21	6	0	0	0	0.25761	1	7887	7887		54.722	10.345	1	17642000			44299	5260	29368	29485	44865	44865					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.54144287109375	3	363.541475	1087.60259	1.1075	0.00040262	-1.3878	-0.00050452	-0.28029	-0.0001019	363.54094591597374	23.378	0.81042	23.378	23.218	24.028	0					23	16	2	0	0	0	0.35021	1	7906	7906		45.972	10.794	1	1065200			44300	5260	29368	29485	44866	44866					0.06229718368649628
TTVDKLIKKT	10	Unmodified	_TTVDKLIKKT_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.9082946777344	3	382.907934	1145.70197	0.36516	0.00013982	0.6247	0.0002392	0.98986	0.00037903	382.90813367134444	22.802	0.66815	22.802	22.644	23.312	0					27	13	3	0	0	0	0.71938	1	7761	7761		13.508	0	1	1331700			44301	2056	29369	29486	44867	44867					0.13495116262765805
TTVEDLGSK	9	Unmodified	_TTVEDLGSK_					0	0	0		ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|473|42.76|0.0|22.03|+|ENST00000618112|BSG,None;BSG|p.G175Afs*4|2|0.38|ENSG00000172270|chr19:579603-579603|G/-|frameshift_variant;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	ENST00000576925.3_1_19:572634-579657:+|nuORF	ENST00000576925.3_1_19:572634-579657:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2453308105469	2	475.245472	948.476391	0.63754	0.00030299	-0.88745	-0.00042176	-0.2499	-0.00011877	475.245025137712	23.94	0.14343	23.94	23.846	23.989	0					6	3	2	0	0	0	0.27249	1	7986	7986		52.937	0.63753	1	69983			44302	325	29370	29487	44868	44868					9.1670727329074E-05
TTVESLIQK	9	Unmodified	_TTVESLIQK_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7929382324219	2	509.792589	1017.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.46	1	33.46	32.96	33.96	0								0	0	0	0.04624	1	11229	11229		87.696	28.914	1				44303	5200	29371	29488	44869	44869					0.06254305894867684
TTVESLIQK	9	Unmodified	_TTVESLIQK_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.79302978515625	2	509.792589	1017.57063	0.27141	0.00013836	-0.29844	-0.00015214	-0.027034	-1.3782E-05	509.79246156855294	33.625	0.25362	33.625	33.532	33.785	0					13	6	3	0	0	0	0.0040894	1	12876	12876		162.25	54.165	1	492100			44304	5200	29371	29488	44870	44870					0.06254305894867684
TTVESLIQK	9	Unmodified	_TTVESLIQK_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7927551269531	2	509.792589	1017.57063	0.69311	0.00035334	-1.1442	-0.0005833	-0.45109	-0.00022996	509.7925357023353	33.434	0.29258	33.434	33.304	33.597	0					13	8	3	0	0	0	0.16002	1	11724	11724		66.429	10.925	1	117090			44305	5200	29371	29488	44871	44871					0.06254305894867684
TTVESLIQK	9	Unmodified	_TTVESLIQK_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7924499511719	2	509.792589	1017.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.582	1	33.582	33.082	34.082	0								0	0	0	0.0012548	1	12779	12779		145.16	57.401	1				44306	5200	29371	29488	44872	44872					0.06254305894867684
TTVKGGQAT	9	Unmodified	_TTVKGGQAT_					0	0	0		ASIC2|p.T213Qfs*32|1|0.35|ENSG00000108684|chr17:33111987-33111987|C/-|frameshift_variant	ASIC2|p.T213Qfs*32|1|0.35|ENSG00000108684|chr17:33111987-33111987|C/-|frameshift_variant	ASIC2|p.T213Qfs*32|1|0.35|ENSG00000108684|chr17:33111987-33111987|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.73565673828125	2	431.735074	861.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.188	1	19.188	18.688	19.688	0								0	0	0	0.27025	1	4917	4917		40.778	1.972	1				44307	242	29372	29489	44873	44873					0.01932621483706498
TTVKPGAKK	9	Unmodified	_TTVKPGAKK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.292236328125	2	465.292559	928.570566	-0.49162	-0.00022875	0.083243	3.8733E-05	-0.40838	-0.00019001	465.2926101587186	11.529	0.33505	11.529	11.443	11.778	0					29	14	5	0	0	0	0.0792	1	2238	2238		84.916	16.431	1	3193800			44308	2445	29373	29490	44874	44874					0.10342350685516521
TTVKPGAKK	9	Unmodified	_TTVKPGAKK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7933044433594	2	465.292559	928.570566	-0.49131	-0.0002286	-0.56347	-0.00026218	-1.0548	-0.00049078	465.29238758250284	11.883	0.25089	11.883	11.789	12.04	0					10	7	2	0	0	0	0.2873	1	2390	2390		51.335	3.4199	1	49079			44309	2445	29373	29490	44875	44875					0.10342350685516521
TTVLLQSLV	9	Unmodified	_TTVLLQSLV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2996826171875	2	487.30005	972.585547	0.63129	0.00030763	-1.2935	-0.00063035	-0.66226	-0.00032272	487.29927751839455	39.335	0.26804	39.335	39.279	39.547	0					20	9	3	0	0	0	0.24334	1	15487	15487		56.434	1.6575	1	330600			44310	7794	29374	29491	44876	44876					0.09815797762860257
TTVLQILQN	9	Unmodified	_TTVLQILQN_					0	0	0		ENST00000394479.3_1_2:61144110-61145349:+|nuORF	ENST00000394479.3_1_2:61144110-61145349:+|nuORF	ENST00000394479.3_1_2:61144110-61145349:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3007202148438	2	515.300581	1028.58661	-1.5496	-0.00079852	0.47917	0.00024692	-1.0704	-0.0005516	515.3014335534756	36.256	0.33634	36.256	36.126	36.463	0					38	13	4	0	0	0	0.39215	1	12951	12951		42.396	0.96952	1	337750			44311	9176	29375	29492	44877	44877					0.07346012131779389
TTVLSAGVTGI	11	Unmodified	_TTVLSAGVTGI_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.29364013671875	2	509.792589	1017.57063	0.69311	0.00035334	-1.1442	-0.0005833	-0.45109	-0.00022996	509.7925357023353	33.434	0.29258	33.434	33.304	33.597	0					13	8	3	0	0	0	0.58789	1	11760	11760		37.812	3.8899	1	117090			44312	7755	29376	29493	44878	44878					0.06254305894856316
TTVLSGINF	9	Unmodified	_TTVLSGINF_					0	0	0		CELSR2-KIAA1324|1|fusion;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;ENST00000490758.6_1_1:109716345-109734117:+|nuORF	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2623596191406	2	476.260925	950.507297	-0.38243	-0.00018214	-0.76373	-0.00036373	-1.1462	-0.00054587	476.26216562867245	26.451	0.13996	26.451	26.383	26.523	0					6	3	2	0	0	0	0.35045	1	8539	8539		45.952	0	1	67073			44313	469	29377	29494	44879	44879					0.030063651776117695
TTVPHVFSK	9	Unmodified	_TTVPHVFSK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	339.19073486328125	3	339.190553	1014.54983	0.51256	0.00017385	-0.32684	-0.00011086	0.18572	6.2994E-05	339.19042254180823	26.322	0.55832	26.322	26.07	26.628	0					38	13	5	0	0	0	0.24095	1	9033	9033		72.879	72.879	1	3976200			44314	1892	29378	29495	44880	44880					0.04313760305853975
TTVPHVFSK	9	Unmodified	_TTVPHVFSK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2826232910156	2	508.282192	1014.54983	1.1453	0.00058212	-1.4645	-0.00074436	-0.31919	-0.00016224	508.281928409319	26.317	0.56002	26.317	26.117	26.677	0					34	11	5	0	0	0	0.04067	1	9391	9391		98.582	16.341	1	2131100			44315	1892	29378	29495	44881	44881					0.04313760305853975
TTVPHVFSK	9	Unmodified	_TTVPHVFSK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2822265625	2	508.282192	1014.54983	-1.894	-0.00096267	2.2069	0.0011217	0.31295	0.00015907	508.28330296834343	26.144	0.21585	26.144	26.03	26.246	0					10	5	2	0	0	0	0.12834	1	8368	8368		72.879	28.762	1	260410			44316	1892	29378	29495	44882	44882					0.04313760305853975
TTVPHVFSK	9	Unmodified	_TTVPHVFSK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2823791503906	2	508.282192	1014.54983	2.9777	0.0015135	-3.3444	-0.0016999	-0.36673	-0.0001864	508.2809056783918	26.276	1.2556	26.276	25.331	26.587	0					46	23	6	0	0	0	0.047855	1	9252	9252		96.034	31.826	1	2003400			44317	1892	29378	29495	44883	44883					0.04313760305853975
TTVQVLRSV	9	Unmodified	_TTVQVLRSV_					0	0	0		ENST00000575246.6_1_17:4711576-4721404:+|nuORF;nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	ENST00000575246.6_1_17:4711576-4721404:+|nuORF	ENST00000575246.6_1_17:4711576-4721404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.8004455566406	2	501.800749	1001.58694	-0.044003	-2.2081E-05	-0.43217	-0.00021686	-0.47617	-0.00023894	501.80072700872	21.225	0.15193	21.225	21.124	21.276	0					9	4	3	0	0	0	0.35045	1	5809	5809		45.952	3.5558	1	153530			44318	3585	29379	29496	44884	44884					0.08621431851622674
TTVRTNASG	9	Unmodified	_TTVRTNASG_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.234619140625	2	453.735606	905.456658	-1.1903	-0.00054009	-4.1764	-0.001895	-5.3668	-0.0024351	453.73256808593817	34.227	0.29259	34.227	34.092	34.384	0					21	13	2	0	0	0	0.54267	1	11528	11528		27.882	2.4321	1	57353			44319	7729	29380	29497	44885	44885					0.00014835852618944045
TTVRTVFK	8	Unmodified	_TTVRTVFK_					0	0	0			REV__nc|ENSG00000162894|O60667-2|FCMR	REV__nc|ENSG00000162894|O60667-2|FCMR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.28363037109375	2	476.284734	950.554916	-0.62405	-0.00029722	-3.118	-0.0014851	-3.742	-0.0017823	476.28351955840867	11.541	0.078415	11.541	11.487	11.566	0					5	3	2	0	0	0	0.46905	1	2257	2257		63.306	11.971	1	46362	+		44320	15845	29381	29498	44886	44886					0.07766064168470166
TTVSRGIAPAP	11	Unmodified	_TTVSRGIAPAP_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.3041381835938	2	535.303655	1068.59276	0.59707	0.00031961	0.23993	0.00012844	0.837	0.00044805	535.3038125460854	21.473	0.72657	21.473	21.263	21.989	0					58	23	3	0	0	0	0.74306	1	5873	5873		23.523	0	1	351130			44321	7502	29382	29499	44887	44887					0.061205303632732466
TTVTAVKTK	9	Unmodified	_TTVTAVKTK_					0	0	0		nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2	nc|ENSG00000157617|Q9Y426-3|C2CD2	nc|ENSG00000157617|Q9Y426-3|C2CD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.79168701171875	2	474.78985	947.565146	2.3388	0.0011104	1.4458	0.00068647	3.7846	0.0017969	474.7905231291321	43.873	0.18967	43.873	43.791	43.981	0					17	6	3	0	0	0	0.42902	1	17580	17580		39.253	39.253	1	197520			44322	5225	29383	29500	44888	44888					0.08926627103051032
TTVVTTKSA	9	Unmodified	_TTVVTTKSA_					0	0	0		CON__P05784	CON__P05784	CON__P05784	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.25799560546875	2	454.258382	906.502212	0.065098	2.9571E-05	-0.61511	-0.00027942	-0.55001	-0.00024985	454.2580546286724	18.479	0.1851	18.479	18.406	18.591	0					7	5	2	0	0	0	0.099922	1	4839	4839		79.451	13.022	1	204290		+	44323	631	29384	29501	44889	44889					0.04522061314992243
TTVVTTKSA	9	Unmodified	_TTVVTTKSA_					0	0	0		CON__P05784	CON__P05784	CON__P05784	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2584228515625	2	454.258382	906.502212	0.87758	0.00039865	-0.9989	-0.00045376	-0.12133	-5.5114E-05	454.2578672442666	18.661	0.1636	18.661	18.555	18.719	0					6	3	2	0	0	0	0.099922	1	5618	5618		79.451	8.1553	1	2286800		+	44324	631	29384	29501	44890	44890					0.04522061314992243
TTWAWLWL	8	Unmodified	_TTWAWLWL_					0	0	0			REV__ENST00000415930.7_2_19:34891015-34891072:+|nuORF	REV__ENST00000415930.7_2_19:34891015-34891072:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.7832641601562	2	538.781828	1075.5491	1.9212	0.0010351	-0.13933	-7.5067E-05	1.7818	0.00096002	538.7816094593483	44.708	0.15683	44.708	44.628	44.785	0					13	9	2	0	0	0	0.44433	1	17372	17372		44.531	0	1	87107	+		44325	19030	29385	29502	44891	44891					0.014349656567901548
TTWKKYGLA	9	Unmodified	_TTWKKYGLA_					0	0	0		KDM1B|p.I116Yfs*48|1|0.14|ENSG00000165097|chr6:18166301-18166301|A/-|frameshift_variant	KDM1B|p.I116Yfs*48|1|0.14|ENSG00000165097|chr6:18166301-18166301|A/-|frameshift_variant	KDM1B|p.I116Yfs*48|1|0.14|ENSG00000165097|chr6:18166301-18166301|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	356.5332946777344	3	356.53432	1066.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.987	1	14.987	14.487	15.487	0								0	0	0	0.30504	1	3339	3339		34.173	7.4796	1				44326	11249	29386	29503	44892	44892					0.050503333399547046
TTWPKLRL	8	Unmodified	_TTWPKLRL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.8097839355469	2	507.808377	1013.6022	2.9541	0.0015001	-0.079226	-4.0232E-05	2.8749	0.0014599	507.80843062085046	28.632	0.3148	28.632	28.478	28.792	0					16	6	4	0	0	0	0.49216	1	10407	10407		60.972	21.719	1	1660300			44327	7595	29387	29504	44893	44893					0.09594343439448494
TTWTLKKQK	9	Unmodified	_TTWTLKKQK_					0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.2251892089844	3	378.560758	1132.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.027	1	18.027	17.527	18.527	0								0	0	0	0.14033	1	4421	4421		62.107	3.8612	1		+		44328	14560	29388	29505	44894	44894					0.09941980294070163
TTYGALGIKVW	11	Unmodified	_TTYGALGIKVW_					0	0	0		tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.8358764648438	2	604.837331	1207.66011	0.38188	0.00023097	-3.957	-0.0023933	-3.5751	-0.0021624	604.8354628256761	20.688	0.14129	20.688	20.612	20.753	0					6	4	2	0	0	0	0.48922	1	5810	5810		27.882	10.517	1	78385			44329	22935	29389	29506	44895	44895					0.06458560574219518
TTYKYEMINK	10	Unmodified	_TTYKYEMINK_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.8846435546875	3	430.884801	1289.63257	0.77625	0.00033447	-1.2512	-0.00053911	-0.47491	-0.00020463	430.88422987301016	26.415	0.22087	26.415	26.326	26.547	0					15	5	3	0	0	0	0.25899	1	9101	9101		72.243	32.37	1	445520			44330	1975	29390	29507	44896	44896					-0.0006571074832208978
TTYKYEMINK	10	Unmodified	_TTYKYEMINK_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.8846435546875	3	430.884801	1289.63257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.388	1	26.388	25.888	26.888	0								0	0	0	0.33147	1	9317	9317		45.908	10.756	1				44331	1975	29390	29507	44897	44897					-0.0006571074832208978
TTYPQTTIRK	10	Unmodified	_TTYPQTTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.8352661132812	2	604.83532	1207.65609	-0.44663	-0.00027014	0.73217	0.00044284	0.28553	0.0001727	604.8356575647198	20.967	0.31089	20.967	20.782	21.093	0					22	7	4	0	0	0	0.0075039	1	6577	6577		155.58	83.707	1	3102800			44332	3372	29391	29508	44898	44898					0.06056471080501069
TTYPQTTIRK	10	Unmodified	_TTYPQTTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.83544921875	2	604.83532	1207.65609	0.40427	0.00024452	-0.11972	-7.2413E-05	0.28455	0.00017211	604.8353461735335	20.899	0.21671	20.899	20.747	20.964	0					9	4	3	0	0	0	0.19191	1	6839	6839		80.455	36.077	1	437120			44333	3372	29391	29508	44899	44899					0.06056471080501069
TTYPQTTIRK	10	Unmodified	_TTYPQTTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.55926513671875	3	403.559305	1207.65609	-0.58629	-0.0002366	0.70445	0.00028429	0.11816	4.7684E-05	403.5596682262059	20.9	0.31658	20.9	20.743	21.059	0					16	6	4	0	0	0	0.70877	1	6706	6706		40.058	22.891	1	1667800			44334	3372	29391	29508	44900	44900					0.06056471080501069
TTYQPLSGK	9	Unmodified	_TTYQPLSGK_					0	0	0		SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant;ENSG00000128602|ENST00000249373|SMO	SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant	SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7637939453125	2	497.763832	993.513111	0.7006	0.00034873	-0.96631	-0.00048099	-0.26571	-0.00013226	497.76329836735835	24.093	0.63136	24.093	23.604	24.236	0					26	14	3	0	0	0	0.30841	1	8076	8076		49.536	1.8787	1	802630			44335	3552	29392	29509	44901	44901					0.01609463689283075
TTYVNGVLQ	9	Unmodified	_TTYVNGVLQ_					0	0	0		tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.76409912109375	2	497.763832	993.513111	0.18586	9.2516E-05	-0.31699	-0.00015779	-0.13113	-6.5272E-05	497.7637765701922	23.83	0.24994	23.83	23.655	23.905	0					15	9	2	0	0	0	0.35021	1	6937	6937		45.972	0.020292	1	102240			44336	22764	29393	29510	44902	44902					0.01609463689283075
TVADLFSIGGA	11	Unmodified	_TVADLFSIGGA_					0	0	0			REV__AASS|p.P693Qfs*3|2|0.34|ENSG00000008311|chr7:122086120-122086120|A/-|frameshift_variant	REV__AASS|p.P693Qfs*3|2|0.34|ENSG00000008311|chr7:122086120-122086120|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7780151367188	2	525.776939	1049.53933	1.7709	0.00093111	1.9256	0.0010124	3.6965	0.0019435	525.7787589034662	38.625	0.79922	38.625	38.333	39.132	0					37	28	2	0	0	0	0.45905	1	15176	15176		45.972	0	1	706580	+		44337	12020	29394	29511	44903	44903					0.01653732860791024
TVAEISQFLK	10	Unmodified	_TVAEISQFLK_					0	0	0		ENST00000451247.1_1_X:75249949-75250162:+|nuORF;nc|ENSG00000162980|Q9Y689-2|ARL5A;ENSG00000162980|ENST00000295087|ARL5A	ENST00000451247.1_1_X:75249949-75250162:+|nuORF	ENST00000451247.1_1_X:75249949-75250162:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.3214111328125	2	568.321514	1134.62847	3.4671	0.0019704	-3.5961	-0.0020437	-0.12899	-7.3308E-05	568.3194087381155	44.987	0.10741	44.987	44.929	45.036	0					7	4	2	0	0	0	0.1998	1	18028	18028		79.489	24.713	1	85918			44338	5516	29395	29512	44904	44904					0.06654567820260127
TVAEKAVKK	9	Unmodified	_TVAEKAVKK_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.3055114746094	2	487.305667	972.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.268	1	13.268	12.768	13.768	0								0	0	0	0.10319	1	2595	2595		70.816	21.28	1				44339	2131	29396	29513	44905	44905					0.10938619856995047
TVAEKAVKK	9	Unmodified	_TVAEKAVKK_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.3054504394531	2	487.305667	972.596781	-0.33799	-0.0001647	-0.17014	-8.2911E-05	-0.50813	-0.00024762	487.3055375729687	13.583	0.19402	13.583	13.511	13.705	0					10	5	3	0	0	0	0.076532	1	3114	3114		85.862	18.368	1	1402900			44340	2131	29396	29513	44906	44906					0.10938619856995047
TVAEKAVKK	9	Unmodified	_TVAEKAVKK_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.305419921875	2	487.305667	972.596781	0.63189	0.00030792	-1.3088	-0.00063777	-0.67687	-0.00032984	487.30499412103114	13.595	0.14832	13.595	13.505	13.653	0					8	3	3	0	0	0	0.035106	1	3334	3334		104.01	26.696	1	650250			44341	2131	29396	29513	44907	44907					0.10938619856995047
TVAEKAVKK	9	Unmodified	_TVAEKAVKK_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.3066101074219	2	487.305667	972.596781	-2.9116	-0.0014188	3.8094	0.0018564	0.89784	0.00043752	487.3075170595337	13.374	0.088387	13.374	13.313	13.401	0					10	5	3	0	0	0	0.063171	1	2676	2676		90.601	25.135	1	73839			44342	2131	29396	29513	44908	44908					0.10938619856995047
TVAETSKEK	9	Unmodified	_TVAETSKEK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7663879394531	2	496.766571	991.51859	-0.33539	-0.00016661	-0.2321	-0.0001153	-0.56749	-0.00028191	496.76639442081006	12.268	0.17637	12.268	12.207	12.384	0					9	6	2	0	0	0	0.063171	1	2540	2540		90.601	26.394	1	1088500			44343	5357	29397	29514	44909	44909					0.02249142481105082
TVAETSKEK	9	Unmodified	_TVAETSKEK_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.76629638671875	2	496.766571	991.51859	-0.75881	-0.00037695	0.29039	0.00014426	-0.46842	-0.0002327	496.76663053845	12.302	0.12971	12.302	12.254	12.384	0					9	3	4	0	0	0	0.019258	1	2737	2737		123.21	30.065	1	1492800			44344	5357	29397	29514	44910	44910					0.02249142481105082
TVAFERGAV	9	Unmodified	_TVAFERGAV_					0	0	0			REV__ENSG00000198113|ENST00000357503|TOR4A	REV__ENSG00000198113|ENST00000357503|TOR4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.25830078125	2	475.258717	948.50288	0.32236	0.0001532	-2.6799	-0.0012736	-2.3575	-0.0011204	475.2580578958631	23.589	0.88124	23.589	23.354	24.236	0					43	20	3	0	0	0	0.36892	1	7834	7834		44.377	5.571	1	832540	+		44345	17381	29398	29515	44911	44911					0.026569007547209367
TVAFERGAV	9	Unmodified	_TVAFERGAV_					0	0	0			REV__ENSG00000198113|ENST00000357503|TOR4A	REV__ENSG00000198113|ENST00000357503|TOR4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2584228515625	2	475.258717	948.50288	-0.61012	-0.00028996	-0.34732	-0.00016507	-0.95744	-0.00045503	475.2588050369686	23.692	0.86037	23.692	23.335	24.196	0					34	17	3	0	0	0	0.42902	1	7985	7985		39.253	2.8061	1	2360800	+		44346	17381	29398	29515	44912	44912					0.026569007547209367
TVAFSFGAPY	10	Unmodified	_TVAFSFGAPY_					0	0	0		ENSG00000173557|ENST00000329615|FAM166C	ENSG00000173557|ENST00000329615|FAM166C	ENSG00000173557|ENST00000329615|FAM166C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2603759765625	2	530.260925	1058.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.907	1	49.907	49.407	50.407	0								0	0	0	0.33119	1	19724	19724		45.952	7.1458	1				44347	6435	29399	29516	44913	44913					-0.019616348223735258
TVAGGPKKT	9	Unmodified	_TVAGGPKKT_					0	0	0			REV__ADCY5|p.N612Kfs*66|1|0.37|ENSG00000173175|chr3:123327729-123327730|-/T|frameshift_variant	REV__ADCY5|p.N612Kfs*66|1|0.37|ENSG00000173175|chr3:123327729-123327730|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.7557678222656	2	429.75581	857.497067	-0.89607	-0.00038509	1.0491	0.00045086	0.15304	6.5768E-05	429.7562621400192	14.644	0.072905	14.644	14.604	14.677	0					5	3	2	0	0	0	0.17854	1	3212	3212		64.207	8.7031	1	54568	+		44348	12083	29400	29517	44914	44914					0.06261802243045622
TVAGLALIK	9	Unmodified	_TVAGLALIK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF;ENST00000467730.1_1_7:105908908-105909650:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.2923889160156	2	443.292028	884.569503	0.24794	0.00010991	0.30395	0.00013474	0.5519	0.00024465	443.2921213414493	38.646	0.13182	38.646	38.6	38.732	0					12	7	2	0	0	0	0.30951	1	12595	12595		49.442	0	1	52037			44349	2401	29401	29518	44915	44915					0.12260136316604076
TVAGLALIK	9	Unmodified	_TVAGLALIK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF;ENST00000467730.1_1_7:105908908-105909650:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7937316894531	2	443.292028	884.569503	-0.10892	-4.8283E-05	0.44134	0.00019564	0.33243	0.00014736	443.29222220403693	38.972	0.21843	38.972	38.906	39.125	0					14	8	2	0	0	0	0.14603	1	14812	14812		68.787	5.4806	1	115470			44350	2401	29401	29518	44916	44916					0.12260136316604076
TVAGLALIK	9	Unmodified	_TVAGLALIK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF;ENST00000467730.1_1_7:105908908-105909650:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.2918701171875	2	443.292028	884.569503	-0.49618	-0.00021995	0.27358	0.00012128	-0.2226	-9.8675E-05	443.2920927321131	38.895	0.30352	38.895	38.792	39.096	0					14	6	3	0	0	0	0.025517	1	15316	15316		113.41	8.665	1	660700			44351	2401	29401	29518	44917	44917					0.12260136316604076
TVAGRMVKK	9	Unmodified	_TVAGRMVKK_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.299560546875	2	495.299862	988.58517	-0.063886	-3.1643E-05	-0.35977	-0.00017819	-0.42365	-0.00020984	495.2997838362867	15.42	0.11552	15.42	15.374	15.49	0					8	5	2	0	0	0	0.21419	1	3350	3350		52.937	3.4952	1	156390			44352	7449	29402	29519	44918	44918					0.09042099562009298
TVAGRMVKK	9	Unmodified	_TVAGRMVKK_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2994689941406	2	495.299862	988.58517	-0.40368	-0.00019994	0.29099	0.00014413	-0.11269	-5.5814E-05	495.2999050918658	15.734	0.12838	15.734	15.646	15.775	0					5	3	2	0	0	0	0.15558	1	4136	4136		69.628	14.123	1	691380			44353	7449	29402	29519	44919	44919					0.09042099562009298
TVAGVHVK	8	Unmodified	_TVAGVHVK_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	405.7451477050781	2	405.745245	809.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.463	1	20.463	19.963	20.963	0								0	0	0	1.7419	1	5719	5719		24.203	0	1				44354	7899	29403	29520	44920	44920					0.06357836934182615
TVAHKIMQK	9	Unmodified	_TVAHKIMQK_					0	0	0		ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.3054809570312	2	528.305144	1054.59573	0.52875	0.00027934	0.63529	0.00033563	1.164	0.00061497	528.3052573325565	16.408	0.088923	16.408	16.358	16.447	0					6	3	2	0	0	0	0.14578	1	3731	3731		52.937	12.159	1	121190			44355	3921	29404	29521	44921	44921					0.07062082216430099
TVAHKIMQK	9	Unmodified	_TVAHKIMQK_					0	0	0		ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	352.5391540527344	3	352.539188	1054.59573	0.89673	0.00031613	-0.93924	-0.00033112	-0.042509	-1.4986E-05	352.5387994893425	16.683	0.10054	16.683	16.59	16.691	0					4	2	2	0	0	0	0.15163	1	4561	4561		67.494	32.342	1	107930			44356	3921	29404	29521	44922	44922					0.07062082216430099
TVAHKIMQK	9	Unmodified	_TVAHKIMQK_					0	0	0		ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.3056030273438	2	528.305144	1054.59573	0.10784	5.6975E-05	0.60892	0.00032169	0.71676	0.00037867	528.3055120942221	16.657	0.17781	16.657	16.562	16.74	0					5	4	2	0	0	0	0.054723	1	4566	4566		77.318	32.94	1	1076500			44357	3921	29404	29521	44923	44923					0.07062082216430099
TVAHKIMQK	9	Unmodified	_TVAHKIMQK_					0	0	0		ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.3057250976562	2	528.305144	1054.59573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.631	1	16.631	16.131	17.131	0								0	0	0	0.1568	1	4789	4789		51.193	9.7661	1				44358	3921	29404	29521	44924	44924					0.07062082216430099
TVAHKIMQK	9	Unmodified	_TVAHKIMQK_					0	0	0		ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	ENSG00000134453|ENST00000379888|RBM17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.3048706054688	2	528.305144	1054.59573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.455	1	16.455	15.955	16.955	0								0	0	0	0.0026431	1	3905	3905		101.6	50.265	1				44359	3921	29404	29521	44925	44925					0.07062082216430099
TVAHNSAL	8	Unmodified	_TVAHNSAL_					0	0	0		ZNF658|p.F695V|1|0.07|ENSG00000274349|chr9:66919649-66919649|T/G|missense_variant	ZNF658|p.F695V|1|0.07|ENSG00000274349|chr9:66919649-66919649|T/G|missense_variant	ZNF658|p.F695V|1|0.07|ENSG00000274349|chr9:66919649-66919649|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.7165222167969	2	406.716685	811.418816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.067	1	24.067	23.567	24.567	0								0	0	0	1.7419	1	8250	8250		55.504	0	1				44360	23169	29405	29522	44926	44926					0.0055636965781786785
TVAKLYHGAQ	10	Unmodified	_TVAKLYHGAQ_					0	0	0		ENST00000570217.1_1_16:89972581-89984411:+|nuORF	ENST00000570217.1_1_16:89972581-89984411:+|nuORF	ENST00000570217.1_1_16:89972581-89984411:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2988891601562	2	544.298373	1086.58219	1.9705	0.0010725	-1.113	-0.00060583	0.85743	0.0004667	544.2976413635772	34.461	1.0059	34.461	33.799	34.805	0					49	19	3	0	0	0	0.46128	1	13256	13256		49.536	0	1	698680			44361	10793	29406	29523	44927	44927					0.042365477088424086
TVAKTAEFI	9	Unmodified	_TVAKTAEFI_					0	0	0			REV__nc|ENSG00000173406|O75553-3|DAB1	REV__nc|ENSG00000173406|O75553-3|DAB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.27667236328125	2	490.276575	978.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.752	1	32.752	32.252	33.252	0								0	0	0	0.19749	1	10607	10607		51.335	1.8939	1		+		44362	21123	29407	29524	44928	44928					0.04846938211710494
TVALALGLK	9	Unmodified	_TVALALGLK_					0	0	0			REV__nc|ENSG00000121940|Q96S66-4|CLCC1	REV__nc|ENSG00000121940|Q96S66-4|CLCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.2913818359375	2	443.292028	884.569503	0.41588	0.00018436	0.3495	0.00015493	0.76539	0.00033929	443.292144048282	38.701	0.16573	38.701	38.629	38.795	0					10	8	2	0	0	0	0.39215	1	13828	13828		42.396	3.59	1	115390	+		44363	21003	29408	29525	44929	44929					0.12260136316604076
TVALGHHKR	9	Unmodified	_TVALGHHKR_					0	0	0		ENST00000428482.5_2_2:242208371-242208434:-|nuORF	ENST00000428482.5_2_2:242208371-242208434:-|nuORF	ENST00000428482.5_2_2:242208371-242208434:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7983703613281	2	509.798875	1017.5832	-1.8283	-0.00093208	0.84886	0.00043275	-0.97948	-0.00049934	509.7992768121766	17.995	0.10921	17.995	17.941	18.05	0					6	2	3	0	0	0	0.13519	1	4616	4616		71.296	17.944	1	533380			44364	9467	29409	29526	44930	44930					0.07510806868413056
TVALLLAGLV	10	Unmodified	_TVALLLAGLV_					0	0	0		LVRN|p.A14T|1|0.27|ENSG00000172901|chr5:115962657-115962657|G/A|missense_variant	LVRN|p.A14T|1|0.27|ENSG00000172901|chr5:115962657-115962657|G/A|missense_variant	LVRN|p.A14T|1|0.27|ENSG00000172901|chr5:115962657-115962657|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.8226318359375	2	485.320786	968.627018	0.66112	0.00032086	-0.54485	-0.00026443	0.11627	5.643E-05	485.3205097743436	42.496	0.33389	42.496	42.322	42.656	0					37	18	3	0	0	0	0.64178	1	16064	16064		29.15	0	1	317990			44365	11340	29410	29527	44931	44931					0.14144978522188012
TVALQKLI	8	Unmodified	_TVALQKLI_					0	0	0			REV__ENST00000375165.5_1_9:100368507-100388213:-|nuORF	REV__ENST00000375165.5_1_9:100368507-100388213:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.29180908203125	2	443.292028	884.569503	0.76131	0.00033748	-1.2698	-0.00056289	-0.50848	-0.00022541	443.2914768506626	38.878	0.25488	38.878	38.778	39.032	0					8	5	2	0	0	0	0.67394	1	15334	15334		37.159	0	1	114110	+		44366	14890	29411	29528	44932	44932					0.12260136316615444
TVANLHVVQ	9	Unmodified	_TVANLHVVQ_					0	0	0			REV__ENSG00000165724|ENST00000298585|ZMYND19	REV__ENSG00000165724|ENST00000298585|ZMYND19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7800598144531	2	490.779816	979.545079	1.3437	0.00065945	-0.72546	-0.00035604	0.61822	0.00030341	490.77935704302377	18.516	0.083714	18.516	18.455	18.539	0					5	3	2	0	0	0	0.2873	1	4614	4614		51.335	5.3835	1	85249	+		44367	16066	29412	29529	44933	44933					0.054488761630864246
TVANLHVVQ	9	Unmodified	_TVANLHVVQ_					0	0	0			REV__ENSG00000165724|ENST00000298585|ZMYND19	REV__ENSG00000165724|ENST00000298585|ZMYND19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7792663574219	2	490.779816	979.545079	-0.066194	-3.2486E-05	-0.61967	-0.00030412	-0.68586	-0.00033661	490.7795200691061	18.769	0.29012	18.769	18.661	18.951	0					12	6	3	0	0	0	0.0792	1	5803	5803		84.916	2.6105	1	1915800	+		44368	16066	29412	29529	44934	44934					0.054488761630864246
TVAPTTANK	9	Unmodified	_TVAPTTANK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;QSOX1|p.S469Vfs*117|1|0.35|ENSG00000116260|chr1:180194325-180194325|G/-|frameshift_variant;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.75048828125	2	451.750724	901.486896	0.23626	0.00010673	-0.71546	-0.00032321	-0.4792	-0.00021648	451.750480720457	16.039	0.14712	16.039	15.949	16.096	0					8	3	3	0	0	0	0.28897	1	4259	4259		51.193	3.5354	1	148810			44369	2976	29413	29530	44935	44935					0.03221194517800541
TVAPTTANK	9	Unmodified	_TVAPTTANK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;QSOX1|p.S469Vfs*117|1|0.35|ENSG00000116260|chr1:180194325-180194325|G/-|frameshift_variant;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.75054931640625	2	451.750724	901.486896	0.66041	0.00029834	-1.2706	-0.000574	-0.61021	-0.00027566	451.7501976937211	16.025	0.22581	16.025	15.937	16.163	0					9	5	2	0	0	0	0.1424	1	4270	4270		69.628	0	1	421530			44370	2976	29413	29530	44936	44936					0.03221194517800541
TVAPTTANK	9	Unmodified	_TVAPTTANK_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;QSOX1|p.S469Vfs*117|1|0.35|ENSG00000116260|chr1:180194325-180194325|G/-|frameshift_variant;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7507019042969	2	451.750724	901.486896	-0.40799	-0.00018431	0.42189	0.00019059	0.013899	6.2787E-06	451.7509035607216	15.956	0.26567	15.956	15.849	16.114	0					7	5	2	0	0	0	0.10915	1	4329	4329		77.318	10.888	1	566600			44371	2976	29413	29530	44937	44937					0.03221194517800541
TVAQLILK	8	Unmodified	_TVAQLILK_					0	0	0			REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM	REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.291748046875	2	443.292028	884.569503	-0.24355	-0.00010797	0.60119	0.0002665	0.35764	0.00015854	443.29223286172544	38.974	0.2997	38.974	38.843	39.143	0					19	10	4	0	0	0	0.30437	1	15300	15300		82.305	2.854	1	263620	+		44372	12809	29414	29531	44938	44938					0.12260136316626813
TVAQQKVPM	9	Oxidation (M)	_TVAQQKVPM(Oxidation (M))_		TVAQQKVPM(1)		TVAQQKVPM(63)	0	0	1			REV__ENST00000432228.1_1_2:222826762-222826840:+|nuORF	REV__ENST00000432228.1_1_2:222826762-222826840:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2732238769531	2	509.273509	1016.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.566	1	29.566	29.066	30.066	0								0	0	0	0.13522	1	9962	9962		63.306	9.9548	1		+		44373	19174	29415	29532	44939	44939		705			0.02486096708560126
TVARLYISK	9	Unmodified	_TVARLYISK_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.8196411132812	2	525.818941	1049.62333	0.52723	0.00027723	0.83552	0.00043933	1.3627	0.00071656	525.8195108545063	25.534	0.14571	25.534	25.45	25.596	0					8	5	2	0	0	0	0.18505	1	7961	7961		56.434	0	1	96604			44374	6256;5148	29416	29533	44940	44940					0.10050308748304815
TVASFPWGK	9	Unmodified	_TVASFPWGK_					0	0	0			REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	REV__nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.76568603515625	2	496.763635	991.512717	2.8836	0.0014325	2.6547	0.0013188	5.5384	0.0027513	496.7649060081353	12.284	0.17474	12.284	12.203	12.377	0					10	6	2	0	0	0	0.14603	1	2564	2564		68.787	2.9837	1	361650	+		44375	14861	29417	29534	44941	44941					0.016620887600993228
TVATAVEQY	9	Unmodified	_TVATAVEQY_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2479553222656	2	491.248015	980.481476	-0.14709	-7.2258E-05	0.60637	0.00029788	0.45928	0.00022562	491.2482947117593	35.117	0.4334	35.117	34.941	35.375	0					40	19	3	0	0	0	0.063823	1	11480	11480		90.37	13.596	1	350220			44376	2970	29418	29535	44942	44942					-0.009545290646542526
TVATAVEQY	9	Unmodified	_TVATAVEQY_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2482604980469	2	491.248015	980.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.304	1	35.304	34.804	35.804	0								0	0	0	0.001501	1	13229	13229		124.08	8.6211	1				44377	2970	29418	29535	44943	44943					-0.009545290646542526
TVATAVEQY	9	Unmodified	_TVATAVEQY_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2476501464844	2	491.248015	980.481476	0.81006	0.00039794	-0.74104	-0.00036404	0.069012	3.3902E-05	491.2476367737945	35.459	0.72187	35.459	35.192	35.914	0					43	19	3	0	0	0	0.02953	1	13222	13222		109.48	21.724	1	1455800			44378	2970	29418	29535	44944	44944					-0.009545290646542526
TVATAVEQY	9	Unmodified	_TVATAVEQY_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2480163574219	2	491.248015	980.481476	-0.063382	-3.1136E-05	-0.13181	-6.4753E-05	-0.1952	-9.5889E-05	491.2478076394257	35.332	0.25251	35.332	35.224	35.477	0					14	7	3	0	0	0	0.00324	1	13676	13676		167.23	42.634	1	230630			44379	2970	29418	29535	44945	44945					-0.009545290646542526
TVATAVEQY	9	Unmodified	_TVATAVEQY_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2479248046875	2	491.248015	980.481476	-0.56373	-0.00027693	1.3449	0.0006607	0.78121	0.00038377	491.2487358688306	35.39	0.67166	35.39	35.129	35.801	0					34	13	3	0	0	0	0.00324	1	13571	13571		167.23	42.634	1	896230			44380	2970	29418	29535	44946	44946					-0.009545290646542526
TVATFILQK	9	Unmodified	_TVATFILQK_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.8085632324219	2	510.808042	1019.60153	1.0877	0.00055561	0.41536	0.00021217	1.5031	0.00076778	510.8081623349236	38.817	0.14109	38.817	38.76	38.901	0					12	8	2	0	0	0	0.28897	1	12640	12640		51.193	9.7661	1	61290			44381	4625	29419	29536	44947	44947					0.09251503999757915
TVATFILQK	9	Unmodified	_TVATFILQK_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.8083190917969	2	510.808042	1019.60153	0.98614	0.00050373	-0.57645	-0.00029446	0.40969	0.00020927	510.80769673879666	39.163	0.28586	39.163	39.035	39.321	0					21	10	3	0	0	0	0.023928	1	14892	14892		115.49	13.893	1	407010			44382	4625	29419	29536	44948	44948					0.09251503999757915
TVATFILQK	9	Unmodified	_TVATFILQK_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.80780029296875	2	510.808042	1019.60153	-0.41539	-0.00021219	1.6834	0.00085988	1.268	0.00064769	510.8088932567101	38.909	0.16027	38.909	38.818	38.979	0					14	9	2	0	0	0	0.41113	1	13117	13117		40.778	5.1599	1	145220			44383	4625	29419	29536	44949	44949					0.09251503999757915
TVATYIVSAI	10	Unmodified	_TVATYIVSAI_					0	0	0			REV__ENSG00000136834|ENST00000259357|OR1J1	REV__ENSG00000136834|ENST00000259357|OR1J1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2971801757812	2	519.297507	1036.58046	-1.3696	-0.00071123	1.9939	0.0010354	0.62432	0.00032421	519.2984952766697	33.77	0.22213	33.77	33.668	33.89	0					12	6	3	0	0	0	0.54197	1	11877	11877		40.778	0.71999	1	222620	+		44384	14881	29420	29537	44950	44950					0.06363493900244066
TVAVAMGK	8	Unmodified	_TVAVAMGK_					0	0	0		ENSG00000100726|ENST00000262319|TELO2;ENST00000568240.1_1_16:1556929-1559934:+|nuORF	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	388.7206726074219	2	388.720381	775.42621	-0.029745	-1.1563E-05	0.12599	4.8974E-05	0.096241	3.7411E-05	388.7204651157917	22.125	0.11438	22.125	22.051	22.165	0					5	3	2	0	0	0	0.66372	1	6215	6215		38.806	6.8513	1	70109			44385	2060	29421	29538	44951	44951					0.029513859338862858
TVAVLKVKE	9	Unmodified	_TVAVLKVKE_					0	0	0			REV__tr|U7SJI0|U7SJI0_FUSNUPyridoxalphosphatehomeostasisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02052PE=3SV=1	REV__tr|U7SJI0|U7SJI0_FUSNUPyridoxalphosphatehomeostasisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02052PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.8150329589844	2	493.815867	985.617182	-0.048581	-2.399E-05	-0.27655	-0.00013656	-0.32513	-0.00016055	493.81569076640085	36.326	0.51553	36.326	36.214	36.729	0					30	14	3	0	0	0	0.48623	1	14285	14285		34.173	2.6427	1	1269700	+		44386	21737	29422	29539	44952	44952					0.12379790516808953
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2840576171875	2	442.284203	882.553853	0.57475	0.0002542	-0.5638	-0.00024936	0.010946	4.8414E-06	442.2839170976413	33.584	1.0096	33.584	33.182	34.192	0					67	26	4	0	0	0	0.098791	1	12494	12494		79.713	35.596	1	9659600			44387	4137	29423	29540	44953	44953					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.2842102050781	2	442.284203	882.553853	-0.27473	-0.00012151	0.96813	0.00042819	0.6934	0.00030668	442.28466609890194	33.582	0.75839	33.582	33.269	34.028	0					49	18	4	0	0	0	0.16002	1	12776	12776		66.429	27.623	1	1776200			44388	4137	29423	29540	44954	44954					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.28448486328125	2	442.284203	882.553853	0.39626	0.00017526	-0.5133	-0.00022702	-0.11703	-5.1762E-05	442.2839539382612	33.368	0.56803	33.368	33.1	33.668	0					44	16	4	0	0	0	0.33044	2	11778	11616;11778		47.657	10.498	1	1566700			44389	4137	29423	29540	44955;44956	44956					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2846374511719	2	442.284203	882.553853	-0.52633	-0.00023279	0.93885	0.00041524	0.41252	0.00018245	442.2847902660376	33.352	0.54268	33.352	33.147	33.689	0					33	15	3	0	0	0	0.37197	1	11647	11647		44.117	13.613	1	385760			44390	4137	29423	29540	44957	44957					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2840270996094	2	442.284203	882.553853	-0.51371	-0.00022721	0.28171	0.00012459	-0.232	-0.00010261	442.2843226241258	33.558	0.9669	33.558	33.151	34.118	0					63	20	5	0	0	0	0.12239	2	12825	12658;12825		74.255	35.449	1	11101000			44391	4137	29423	29540	44958;44959	44959					0.10787849799567084
TVAVPTAS	8	Unmodified	_TVAVPTAS_					0	0	0			REV__SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant	REV__SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2100830078125	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.024	1	54.024	53.524	54.524	0								0	0	0	1.7419	1	20700	20700		35.201	1.6851	1		+		44392	14876	29424	29541	44960	44960					0.01934449052009768
TVCDFRLSY	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DFRLSY_	TVC(1)DFRLSY		TVC(67)DFRLSY		0	1	0		ENST00000533086.5_1_19:15228578-15234387:-|nuORF;ENSG00000105135|ENST00000263383|ILVBL	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.7747802734375	2	580.773874	1159.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.76	1	41.76	41.26	42.26	0								0	0	0	0.11736	1	16629	16629		67.494	17.958	1				44393	2332	29425	29542	44961	44961	93				-0.04019108642387437
TVCDLIQSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLIQSK_	TVC(1)DLIQSK		TVC(96)DLIQSK		0	1	0		ENST00000585348.1_1_17:42428425-42428671:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.2769165039062	2	532.276249	1062.53795	1.0253	0.00054573	0.21911	0.00011663	1.2444	0.00066236	532.2766446234266	31.26	0.20191	31.26	31.181	31.383	0					16	8	3	0	0	0	0.047855	1	10030	10030		96.034	10.172	1	183290			44394	1149	29426	29543	44962	44962	39				0.009177755003747734
TVCDLIQSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLIQSK_	TVC(1)DLIQSK		TVC(100)DLIQSK		0	1	0		ENST00000585348.1_1_17:42428425-42428671:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2772827148438	2	532.276249	1062.53795	2.3856	0.0012698	-1.3693	-0.00072883	1.0163	0.00054095	532.2754518399648	31.537	0.25532	31.537	31.413	31.668	0					9	6	2	0	0	0	0.035106	1	11465	11465		104.01	18.152	1	1131900			44395	1149	29426	29543	44963	44963	39				0.009177755003747734
TVCDLIQSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLIQSK_	TVC(1)DLIQSK		TVC(88)DLIQSK		0	1	0		ENST00000585348.1_1_17:42428425-42428671:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2767944335938	2	532.276249	1062.53795	1.9771	0.0010524	-1.0035	-0.00053416	0.97359	0.00051822	532.2756224665408	31.328	0.12968	31.328	31.243	31.373	0					8	3	3	0	0	0	0.070005	1	10761	10761		88.177	17.361	1	125950			44396	1149	29426	29543	44964	44964	39				0.009177755003747734
TVCDLIQSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLIQSK_	TVC(1)DLIQSK		TVC(99)DLIQSK		0	1	0		ENST00000585348.1_1_17:42428425-42428671:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2760009765625	2	532.276249	1062.53795	1.1574	0.00061603	-0.17417	-9.2707E-05	0.98319	0.00052333	532.2758872477484	31.311	0.17121	31.311	31.232	31.403	0					8	4	2	0	0	0	0.04067	1	10753	10753		98.582	27.766	1	193450			44397	1149	29426	29543	44965	44965	39				0.009177755003747734
TVCDLIQSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLIQSK_	TVC(1)DLIQSK		TVC(150)DLIQSK		0	1	0		ENST00000585348.1_1_17:42428425-42428671:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.27783203125	2	532.276249	1062.53795	0.71988	0.00038318	0.43309	0.00023052	1.153	0.0006137	532.2765538146377	31.479	0.3141	31.479	31.37	31.684	0					13	6	3	0	0	0	0.0059092	1	11762	11762		154.12	36.307	1	915680			44398	1149	29426	29543	44966	44966	39				0.009177755003747734
TVCDLIQSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLIQSK_	TVC(1)DLIQSK		TVC(180)DLIQSK		0	1	0		ENST00000585348.1_1_17:42428425-42428671:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2765502929688	2	532.276249	1062.53795	1.7389	0.00092557	-0.69505	-0.00036996	1.0438	0.00055561	532.2759164816025	31.464	0.31353	31.464	31.353	31.667	0					17	6	4	0	0	0	0.0015666	1	11776	11776		177.3	42.539	1	1266600			44399	1149	29426	29543	44967	44967	39				0.009177755003747734
TVCDLVLGK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLVLGK_	TVC(1)DLVLGK		TVC(77)DLVLGK		0	1	0		ENST00000482547.1_1_10:131265539-131334642:+|nuORF;ENST00000482653.1_1_10:131265539-131362121:+|nuORF	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7760009765625	2	502.775885	1003.53722	0.72469	0.00036436	-3.3615	-0.0016901	-2.6368	-0.0013257	502.7751963625396	37.343	0.2907	37.343	37.179	37.47	0					18	8	3	0	0	0	0.10915	1	14138	14138		77.318	43.145	1	189120			44400	9969	29427	29544	44968	44968	406				0.03558980851312299
TVCDLVLGK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLVLGK_	TVC(1)DLVLGK		TVC(90)DLVLGK		0	1	0		ENST00000482547.1_1_10:131265539-131334642:+|nuORF;ENST00000482653.1_1_10:131265539-131362121:+|nuORF	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.77569580078125	2	502.775885	1003.53722	0.063616	3.1984E-05	-0.74877	-0.00037646	-0.68516	-0.00034448	502.7756954720952	37.275	0.20281	37.275	37.2	37.403	0					15	6	3	0	0	0	0.063823	1	14566	14566		90.37	21.583	1	171450			44401	9969	29427	29544	44969	44969	406				0.03558980851312299
TVCDLVLGK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))DLVLGK_	TVC(1)DLVLGK		TVC(62)DLVLGK		0	1	0		ENST00000482547.1_1_10:131265539-131334642:+|nuORF;ENST00000482653.1_1_10:131265539-131362121:+|nuORF	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.775390625	2	502.775885	1003.53722	-0.49295	-0.00024785	-0.2715	-0.0001365	-0.76445	-0.00038435	502.77607461295503	37.227	0.31388	37.227	37.12	37.434	0					13	6	3	0	0	0	0.19605	1	14527	14527		62.107	14.45	1	202150			44402	9969	29427	29544	44970	44970	406				0.03558980851312299
TVCEKTVLK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))EKTVLK_	TVC(1)EKTVLK		TVC(64)EKTVLK		0	1	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	360.2051696777344	3	359.870603	1076.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.088	1	20.088	19.588	20.588	0								0	0	0	0.13425	1	5582	5582		63.534	13.998	1				44403	7595	29428	29545	44971	44971	323				0.05474938914107952
TVCEKTVLK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))EKTVLK_	TVC(1)EKTVLK		TVC(78)EKTVLK		0	1	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8705139160156	3	359.870603	1076.58998	-0.065023	-2.34E-05	-0.070406	-2.5337E-05	-0.13543	-4.8737E-05	359.87058413398483	20.251	0.16811	20.251	20.143	20.311	0					6	3	2	0	0	0	0.10506	1	6411	6411		78.264	10.77	1	1268500			44404	7595	29428	29545	44972	44972	323				0.05474938914107952
TVCEKTVLK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))EKTVLK_	TVC(1)EKTVLK		TVC(160)EKTVLK		0	1	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3026123046875	2	539.302267	1076.58998	2.0682	0.0011154	-1.4286	-0.00077044	0.63966	0.00034497	539.3016038990208	20.234	0.21685	20.234	20.128	20.344	0					8	4	3	0	0	0	0.0047071	1	6404	6404		159.28	21.214	1	2135400			44405	7595	29428	29545	44973	44973	323				0.05474938914107952
TVCKLSVSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))KLSVSK_	TVC(1)KLSVSK		TVC(60)KLSVSK		0	1	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2889099121094	2	511.289159	1020.56377	1.0067	0.00051473	-1.8515	-0.00094664	-0.84475	-0.00043191	511.28823893559894	19.787	0.27592	19.787	19.661	19.937	0					12	6	3	0	0	0	0.21222	1	6042	6042		60.167	10.725	1	1096800			44406	11514;11513	29429	29546	44974	44974	454				0.054306697426454775
TVCKLSVSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))KLSVSK_	TVC(1)KLSVSK		TVC(48)KLSVSK		0	1	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.28948974609375	2	511.289159	1020.56377	-0.38379	-0.00019623	1.5276	0.00078102	1.1438	0.0005848	511.2898616448697	19.486	0.11469	19.486	19.413	19.528	0					5	3	2	0	0	0	0.3269	1	5294	5294		47.96	9.1534	1	89127			44407	11514;11513	29429	29546	44975	44975	454				0.054306697426454775
TVCKLSVSK	9	Carbamidomethyl (C)	_TVC(Carbamidomethyl (C))KLSVSK_	TVC(1)KLSVSK		TVC(99)KLSVSK		0	1	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7903747558594	2	511.289159	1020.56377	0.36699	0.00018764	-0.99691	-0.00050971	-0.62991	-0.00032207	511.7899900819838	19.497	0.09861	19.497	19.45	19.548	0					4	2	2	0	0	0	0.040209	1	5319	5319		99.013	42.579	1	93676			44408	11514;11513	29429	29546	44976	44976	454				0.054306697426454775
TVCKPLISR	9	Unmodified	_TVCKPLISR_					0	0	0		IP6K1|p.K150Efs*26|1|0.24|ENSG00000176095|chr3:49732958-49732959|TT/-|frameshift_variant;ENSG00000176095|ENST00000321599|IP6K1	IP6K1|p.K150Efs*26|1|0.24|ENSG00000176095|chr3:49732958-49732959|TT/-|frameshift_variant	IP6K1|p.K150Efs*26|1|0.24|ENSG00000176095|chr3:49732958-49732959|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7996826171875	2	508.799694	1015.58484	0.91644	0.00046628	-0.83491	-0.0004248	0.081528	4.1482E-05	508.79934801373025	23.794	0.40783	23.794	23.565	23.973	0					19	9	3	0	0	0	0.40353	1	7942	7942		41.427	10.923	1	450010			44409	6588	29430	29547	44977	44977					0.07766679842166013
TVCLTLTAK	9	Unmodified	_TVCLTLTAK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ATP1A4|p.P701Lfs*20|1|0.3|ENSG00000132681|chr1:160174218-160174218|C/-|frameshift_variant;nc|ENSG00000163399|P05023-2|ATP1A1;ATP1A3|p.I582Tfs*73|1|0.04|ENSG00000105409|chr19:41978212-41978212|A/-|frameshift_variant;ATP1A4|p.E557Nfs*4|1|0.1|ENSG00000132681|chr1:160171424-160171424|G/-|frameshift_variant	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.27276611328125	2	475.272978	948.531403	0.96067	0.00045658	-1.0869	-0.00051656	-0.12619	-5.9973E-05	475.2726221506109	33.479	0.17269	33.479	33.413	33.586	0					8	5	2	0	0	0	0.30841	1	10897	10897		49.536	16.724	1	76075			44410	1091	29431	29548	44978	44978					0.05507882339634307
TVCLTLTAK	9	Unmodified	_TVCLTLTAK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ATP1A4|p.P701Lfs*20|1|0.3|ENSG00000132681|chr1:160174218-160174218|C/-|frameshift_variant;nc|ENSG00000163399|P05023-2|ATP1A1;ATP1A3|p.I582Tfs*73|1|0.04|ENSG00000105409|chr19:41978212-41978212|A/-|frameshift_variant;ATP1A4|p.E557Nfs*4|1|0.1|ENSG00000132681|chr1:160171424-160171424|G/-|frameshift_variant	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2727966308594	2	475.272978	948.531403	0.63242	0.00030057	-0.91673	-0.0004357	-0.28431	-0.00013512	475.27267743267845	33.772	0.46198	33.772	33.67	34.132	0					28	12	3	0	0	0	0.22837	1	12502	12502		58.23	10.573	1	267870			44411	1091	29431	29548	44979	44979					0.05507882339634307
TVCLTLTAK	9	Unmodified	_TVCLTLTAK_					0	0	0		nc|ENSG00000163399|P05023-4|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ATP1A4|p.P701Lfs*20|1|0.3|ENSG00000132681|chr1:160174218-160174218|C/-|frameshift_variant;nc|ENSG00000163399|P05023-2|ATP1A1;ATP1A3|p.I582Tfs*73|1|0.04|ENSG00000105409|chr19:41978212-41978212|A/-|frameshift_variant;ATP1A4|p.E557Nfs*4|1|0.1|ENSG00000132681|chr1:160171424-160171424|G/-|frameshift_variant	nc|ENSG00000163399|P05023-4|ATP1A1	nc|ENSG00000163399|P05023-4|ATP1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2723083496094	2	475.272978	948.531403	-0.11986	-5.6967E-05	-0.59436	-0.00028248	-0.71422	-0.00033945	475.27276810444914	33.807	0.33746	33.807	33.69	34.028	0					19	8	3	0	0	0	0.16806	1	12945	12945		65.465	15.929	1	104270			44412	1091	29431	29548	44980	44980					0.05507882339634307
TVCNQIIEQ	9	Unmodified	_TVCNQIIEQ_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2620239257812	2	524.260599	1046.50665	0.092638	4.8566E-05	2.4864	0.0013035	2.579	0.0013521	524.2618926457423	14.595	0.17147	14.595	14.483	14.655	0					11	4	4	0	0	0	0.36892	1	3591	3591		44.377	1.5129	1	854860	+		44413	17188	29432	29549	44981	44981					-0.014747975337513708
TVCQCKEGTF	10	Unmodified	_TVCQCKEGTF_					0	0	0		ENSG00000173535|ENST00000356864|TNFRSF10C	ENSG00000173535|ENST00000356864|TNFRSF10C	ENSG00000173535|ENST00000356864|TNFRSF10C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2474975585938	2	558.246634	1114.47872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.795	1	49.795	49.295	50.295	0								0	0	0	0.4044	1	19680	19680		29.17	2.4771	1				44414	6432	29433	29550	44982	44982					-0.07394443785483418
TVCYAKHF	8	Unmodified	_TVCYAKHF_					0	0	0		ENST00000523102.5_1_12:6980128-6980251:-|nuORF	ENST00000523102.5_1_12:6980128-6980251:-|nuORF	ENST00000523102.5_1_12:6980128-6980251:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.737548828125	2	484.736563	967.458573	2.4678	0.0011962	-0.078908	-3.8249E-05	2.3889	0.001158	484.7363441489951	28.784	0.51486	28.784	28.675	29.19	0					23	10	3	0	0	0	0.7126	1	10479	10479		31.955	2.1133	1	1773200			44415	10333	29434	29551	44983	44983					-0.02645826663126627
TVDDRRRF	8	Unmodified	_TVDDRRRF_					0	0	0		sp|F5HF23|RL5A_HCMVMProteinRL5AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL5APE=4SV=1	sp|F5HF23|RL5A_HCMVMProteinRL5AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL5APE=4SV=1	sp|F5HF23|RL5A_HCMVMProteinRL5AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL5APE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.525390625	3	355.524707	1063.55229	3.058	0.0010872	-0.70924	-0.00025215	2.3488	0.00083506	355.52444820712924	31.232	0.36089	31.232	31.093	31.454	0					17	7	4	0	0	0	0.68754	1	11649	11649		37.159	0	1	1092000			44416	22450	29435	29552	44984	44984					0.023056087635040967
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2769775390625	2	549.277303	1096.54005	1.8409	0.0010112	-2.053	-0.0011277	-0.21215	-0.00011653	549.2761023288701	16.367	0.59501	16.367	16.275	16.87	0					35	14	4	0	0	0	0.0028263	1	4429	4429		169.65	64.906	1	16859000			44417	6903	29436	29553	44985	44985					-0.0043547249019866285
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.2777709960938	2	549.277303	1096.54005	0.36059	0.00019806	0.16702	9.1742E-05	0.52761	0.0002898	549.2772093715238	16.133	0.43186	16.133	16.011	16.443	0					35	15	5	0	0	0	0.013298	1	3786	3786		133.99	58.95	1	3971300			44418	6903	29436	29553	44986	44986					-0.0043547249019866285
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2769775390625	2	549.277303	1096.54005	1.7374	0.0009543	-2.4395	-0.0013399	-0.70207	-0.00038563	549.2760705870957	16.322	1.1053	16.322	16.162	17.268	0					44	22	4	0	0	0	0.0028263	1	4650	4650		169.65	64.906	1	43777000			44419	6903	29436	29553	44987	44987					-0.0043547249019866285
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.2777709960938	2	549.277303	1096.54005	1.1579	0.00063599	-0.81502	-0.00044767	0.34286	0.00018832	549.2767652857885	16.158	0.4221	16.158	16.069	16.491	0					31	12	4	0	0	0	0.037712	1	3751	3751		101.46	39.352	1	4932600			44420	6903	29436	29553	44988	44988					-0.0043547249019866285
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	366.5203552246094	3	366.520628	1096.54005	-0.10719	-3.9288E-05	-0.25434	-9.3222E-05	-0.36153	-0.00013251	366.5205333634901	16.158	0.2007	16.158	16.069	16.27	0					15	6	3	0	0	0	0.21263	1	3762	3762		76.17	46.031	1	1555700			44421	6903	29436	29553	44989	44989					-0.0043547249019866285
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.277587890625	2	549.277303	1096.54005	1.8361	0.0010085	-2.1234	-0.0011663	-0.28732	-0.00015782	549.2759880823719	16.342	0.41668	16.342	16.234	16.65	0					32	8	5	0	0	0	0.001056	1	4489	4489		182.39	68.98	1	38224000			44422	6903	29436	29553	44990	44990					-0.0043547249019866285
TVDGRVVEPK	10	Unmodified	_TVDGRVVEPK_					0	0	0		ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.310302734375	2	550.308938	1098.60332	1.2813	0.0007051	-0.71987	-0.00039615	0.5614	0.00030894	550.3083884392306	22.251	0.30796	22.251	22.088	22.396	0					19	9	3	0	0	0	0.43708	1	6230	6230		52.167	0	1	221740			44423	9580	29437	29554	44991	44991					0.05796513017708094
TVDKLQEIGDM	11	Oxidation (M)	_TVDKLQEIGDM(Oxidation (M))_		TVDKLQEIGDM(1)		TVDKLQEIGDM(41)	0	0	1			REV__ENSG00000145375|ENST00000274008|SPATA5	REV__ENSG00000145375|ENST00000274008|SPATA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	632.8106689453125	2	632.80811	1263.60167	1.5501	0.00098094	2.7125	0.0017165	4.2626	0.0026974	632.8099848888693	13.533	0.22702	13.533	13.33	13.557	0					14	5	4	0	0	0	0.53842	1	3319	3319		41.427	6.2484	1	219560	+		44424	15269	29438	29555	44992	44992		585			-0.019589088532029564
TVDPRVTFGE	10	Unmodified	_TVDPRVTFGE_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.78759765625	2	560.785296	1119.55604	3.4697	0.0019458	0.81671	0.000458	4.2865	0.0024038	560.7857017341296	36.509	0.31786	36.509	36.395	36.713	0					16	6	4	0	0	0	0.36432	1	14208	14208		65.465	16.024	1	657930	+		44425	14580	29439	29556	44993	44993					0.0010423374674246588
TVDQSKIF	8	Unmodified	_TVDQSKIF_					0	0	0			REV__ENSG00000146530|ENST00000275358|VWDE	REV__ENSG00000146530|ENST00000275358|VWDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.25347900390625	2	469.2531	936.491647	-0.12648	-5.9352E-05	0.27277	0.000128	0.14629	6.8647E-05	469.25327182603627	36.916	0.14204	36.916	36.839	36.981	0					7	4	2	0	0	0	0.69548	1	14415	14415		34.173	0	1	86837	+		44426	15316	29440	29557	44994	44994					0.020860786605908288
TVEASDQGR	9	Unmodified	_TVEASDQGR_					0	0	0		CELSR2-KIAA1324|1|fusion;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.72930908203125	2	481.73052	961.446488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.427	1	36.427	35.927	36.927	0								0	0	0	0.34845	1	14186	14186		25.574	1.3713	1				44427	469	29441	29558	44995	44995					-0.03577771872608082
TVEASLGNTGA	11	Unmodified	_TVEASLGNTGA_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.5052490234375	3	340.504978	1018.4931	0.51068	0.00017389	0.56181	0.0001913	1.0725	0.00036519	340.50523579504664	23.523	0.4845	23.523	23.433	23.918	0					16	11	3	0	0	0	0.4771	1	7807	7807		45.908	3.0438	1	548050	+		44428	17527	29442	29559	44996	44996					-0.015403320413270194
TVEDRGQKK	9	Unmodified	_TVEDRGQKK_					0	0	0			REV__ENST00000485230.5_2_3:112970233-112970398:+|nuORF	REV__ENST00000485230.5_2_3:112970233-112970398:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7932739257812	2	530.790912	1059.56727	2.4239	0.0012866	1.4353	0.00076186	3.8593	0.0020485	530.7916154082563	25.542	0.82638	25.542	25.102	25.929	0					40	17	4	0	0	0	0.17854	1	8730	8730		64.207	2.0999	1	4523700	+		44429	19650	29443	29560	44997	44997					0.0398705584086656
TVEDVFLRK	9	Unmodified	_TVEDVFLRK_					0	0	0		ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.8143310546875	2	553.813856	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.489	1	33.489	32.989	33.989	0								0	0	0	0.24544	1	11239	11239		44.377	9.2252	1				44430	1331	29444	29561	44998	44998					0.06457701023100526
TVEDVFLRK	9	Unmodified	_TVEDVFLRK_					0	0	0		ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.8142700195312	2	553.813856	1105.61316	0.0059447	3.2922E-06	0.47721	0.00026429	0.48315	0.00026758	553.8142817666843	33.642	0.1675	33.642	33.546	33.713	0					9	4	3	0	0	0	0.07136	1	12880	12880		87.696	21.267	1	206500			44431	1331	29444	29561	44999	44999					0.06457701023100526
TVEDVIVRK	9	Unmodified	_TVEDVIVRK_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;ENST00000515254.1_1_5:137506426-137514303:-|nuORF	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.814208984375	2	529.813856	1057.61316	0.11409	6.0446E-05	0.41247	0.00021853	0.52656	0.00027898	529.8141131891383	25.661	0.171	25.661	25.573	25.744	0					10	4	3	0	0	0	0.019882	1	8801	8801		122.18	14.088	1	483720			44432	321	29445	29562	45000	45000					0.0866570102307378
TVEDVIVRK	9	Unmodified	_TVEDVIVRK_					0	0	0		BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;ENST00000515254.1_1_5:137506426-137514303:-|nuORF	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.8145141601562	2	529.813856	1057.61316	0.2866	0.00015184	0.35766	0.00018949	0.64426	0.00034134	529.8141305359791	25.628	0.16845	25.628	25.569	25.738	0					7	3	3	0	0	0	0.025517	1	9131	9131		113.41	36.637	1	179290			44433	321	29445	29562	45001	45001					0.0866570102307378
TVEFLAVPI	9	Unmodified	_TVEFLAVPI_					0	0	0		ENST00000372264.3_1_9:134183814-134184315:+|nuORF	ENST00000372264.3_1_9:134183814-134184315:+|nuORF	ENST00000372264.3_1_9:134183814-134184315:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7872009277344	2	494.789318	987.564084	-0.4282	-0.00021187	-3.3456	-0.0016554	-3.7738	-0.0018673	494.7873774593979	32.375	0.17329	32.375	32.251	32.424	0					8	4	3	0	0	0	0.16524	1	11888	11888		65.803	2.4969	1	149260			44434	8974	29446	29563	45002	45002					0.06980412734139918
TVEGRTRR	8	Unmodified	_TVEGRTRR_					0	0	0			REV__ENST00000372857.7_1_1:40042222-40042411:-|nuORF	REV__ENST00000372857.7_1_1:40042222-40042411:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.77850341796875	2	487.778139	973.541725	2.5672	0.0012522	-0.64888	-0.00031651	1.9183	0.00093571	487.7777566934789	46.53	0.17506	46.53	46.438	46.613	0					12	8	2	0	0	0	0.66095	1	18608	18608		39.253	2.2244	1	133290	+		44435	18675	29447	29564	45003	45003					0.0538962610909266
TVEHTTNI	8	Unmodified	_TVEHTTNI_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.732421875	2	457.732532	913.45051	-1.0121	-0.00046326	0.61168	0.00027999	-0.4004	-0.00018327	457.73274951182304	31.615	0.5365	31.615	31.324	31.861	0					32	21	2	0	0	0	0.54629	1	10459	10459		55.504	4.3115	1	82522			44436	4147	29448	29565	45004	45004					-0.009676823789163791
TVEKYRVL	8	Unmodified	_TVEKYRVL_					0	0	0		GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant	GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant	GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.861	1	38.861	38.361	39.361	0								0	0	0	1.7419	1	12653	12653		23.042	0.46283	1				44437	11154	29449	29566	45005	45005					0.0781033333993264
TVERAKSHL	9	Unmodified	_TVERAKSHL_					0	0	0			REV__ENST00000202028.9_1_20:34817763-34817889:+|nuORF	REV__ENST00000202028.9_1_20:34817763-34817889:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.7965698242188	2	520.795998	1039.57744	1.0936	0.00056955	-0.071247	-3.7105E-05	1.0224	0.00053245	520.7961427742412	24.818	0.16158	24.818	24.712	24.873	0					8	3	3	0	0	0	0.24095	1	8719	8719		56.721	5.3856	1	227640	+		44438	17870	29450	29567	45006	45006					0.05923663566090909
TVESVLLQAA	10	Unmodified	_TVESVLLQAA_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;CPSF3L|p.A562T|1|0.2|ENSG00000127054|chr1:1312071-1312071|C/T|missense_variant;ENST00000470030.6_1_1:1247241-1248711:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2948608398438	2	515.792589	1029.57063	0.83316	0.00042974	0.12747	6.5749E-05	0.96063	0.00049549	515.7923414693794	25.511	0.31155	25.511	25.358	25.67	0					13	6	3	0	0	0	0.55603	1	9051	9051		39.253	4.0521	1	895970			44439	3496	29451	29568	45007	45007					0.057023058948516336
TVETKSATY	9	Unmodified	_TVETKSATY_					0	0	0			REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2529602050781	2	500.253297	998.492041	0.89922	0.00044984	-1.1937	-0.00059715	-0.29447	-0.00014731	500.2526634291223	25.385	0.26201	25.385	25.29	25.552	0					10	5	3	0	0	0	0.30951	1	9021	9021		49.442	0	1	763370	+		44440	21170	29452	29569	45008	45008					-0.007265464102374608
TVEVAKKL	8	Unmodified	_TVEVAKKL_					0	0	0		tr|U7T6P2|U7T6P2_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00314PE=4SV=1	tr|U7T6P2|U7T6P2_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00314PE=4SV=1	tr|U7T6P2|U7T6P2_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00314PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2811584472656	2	444.28166	886.548768	0.21716	9.6481E-05	-0.53781	-0.00023894	-0.32065	-0.00014246	444.2814006865646	23.289	0.12487	23.289	23.221	23.346	0					5	3	2	0	0	0	0.53424	1	6715	6715		56.721	0	1	104570			44441	23041	29453	29570	45009	45009					0.10095545936940198
TVEVTLNY	8	Unmodified	_TVEVTLNY_					0	0	0			REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7451171875	2	469.745108	937.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.041	1	36.041	35.541	36.541	0								0	0	0	1.7419	1	12876	12876		49.442	0	1		+		44442	13366	29454	29571	45010	45010					0.004423724236630733
TVEYTKTK	8	Unmodified	_TVEYTKTK_					0	0	0		ENST00000577104.1_1_17:52555182-52555515:+|nuORF	ENST00000577104.1_1_17:52555182-52555515:+|nuORF	ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.2655029296875	2	485.266207	968.517862	-1.237	-0.00060029	0.91795	0.00044545	-0.31909	-0.00015484	485.266697251227	31.084	0.15684	31.084	31.01	31.167	0					12	6	3	0	0	0	0.5676	1	10264	10264		53.351	7.3995	1	168010			44443	10835	29455	29572	45011	45011					0.03234347832062667
TVFANKAVV	9	Unmodified	_TVFANKAVV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7808837890625	2	474.779285	947.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.547	1	14.547	14.047	15.047	0								0	0	0	0.19749	1	3099	3099		51.335	5.3835	1		+		44444	15602;22247	29456	29573	45012	45012					0.06814661794180665
TVFATEKI	8	Unmodified	_TVFATEKI_					0	0	0			REV__PLCB4|p.E494Rfs*4|1|0.26|ENSG00000101333|chr20:9395586-9395587|-/A|frameshift_variant	REV__PLCB4|p.E494Rfs*4|1|0.26|ENSG00000101333|chr20:9395586-9395587|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.75775146484375	2	454.758018	907.501483	0.72136	0.00032804	-0.93295	-0.00042427	-0.21159	-9.6223E-05	454.7574669610408	38.443	0.21323	38.443	38.361	38.574	0					18	7	3	0	0	0	0.29286	1	15076	15076		84.916	5.2029	1	200080	+		44445	13597	29457	29574	45013	45013					0.04403266665940464
TVFAVGNPS	9	Unmodified	_TVFAVGNPS_					0	0	0		nc|ENSG00000148288|Q8N5D6-2|GBGT1	nc|ENSG00000148288|Q8N5D6-2|GBGT1	nc|ENSG00000148288|Q8N5D6-2|GBGT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.2326354980469	2	446.232168	890.449782	-1.1673	-0.00052087	1.2595	0.00056204	0.092247	4.1163E-05	446.23266948303575	40.059	0.41734	40.059	39.848	40.265	0					37	23	2	0	0	0	0.42902	1	13389	13389		39.253	0.44669	1	349350			44446	11577	29458	29575	45014	45014					0.00017522972052574914
TVFELLVM	8	Oxidation (M)	_TVFELLVM(Oxidation (M))_		TVFELLVM(1)		TVFELLVM(63)	0	0	1			REV__CON__Q9U6Y5	REV__CON__Q9U6Y5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.260009765625	2	484.262079	966.509605	-2.9168	-0.0014125	-1.1951	-0.00057874	-4.1119	-0.0019912	484.26135841755183	34.887	0.28322	34.887	34.741	35.025	0					14	10	2	0	0	0	0.4723	1	12372	12372		62.978	16.212	1	162060	+	+	44447	12622	29459	29576	45015	45015		484			0.025010775910800476
TVFKNGKVTK	10	Unmodified	_TVFKNGKVTK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	374.5609436035156	3	374.560758	1120.66044	0.50411	0.00018882	-0.2767	-0.00010364	0.22741	8.5179E-05	374.5608273193612	16.824	0.069052	16.824	16.778	16.847	0					6	3	2	0	0	0	0.59277	1	3900	3900		47.228	15.593	1	93022			44448	2401	29460	29577	45016	45016					0.10493980294063476
TVFKNGKVTK	10	Unmodified	_TVFKNGKVTK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.33837890625	2	561.337498	1120.66044	0.12752	7.1584E-05	1.887	0.0010593	2.0145	0.0011308	561.3382448716455	16.898	0.093737	16.898	16.851	16.944	0					7	4	2	0	0	0	0.034592	1	4140	4140		114.86	18.668	1	118180			44449	2401	29460	29577	45017	45017					0.10493980294063476
TVFKNGKVTK	10	Unmodified	_TVFKNGKVTK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.3377075195312	2	561.337498	1120.66044	1.828	0.0010261	-1.234	-0.00069269	0.59403	0.00033345	561.3366256988379	17.106	0.22078	17.106	16.996	17.217	0					9	4	3	0	0	0	0.06456	1	5034	5034		104.42	27.106	1	1522500			44450	2401	29460	29577	45018	45018					0.10493980294063476
TVFKNGKVTK	10	Unmodified	_TVFKNGKVTK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.5606689453125	3	374.560758	1120.66044	-0.12296	-4.6055E-05	-0.059523	-2.2295E-05	-0.18248	-6.835E-05	374.5607956358096	16.903	0.096886	16.903	16.846	16.943	0					4	2	2	0	0	0	0.56063	1	4111	4111		58.63	23.478	1	65478			44451	2401	29460	29577	45019	45019					0.10493980294063476
TVFKNGKVTK	10	Unmodified	_TVFKNGKVTK_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.3380737304688	2	561.337498	1120.66044	1.0003	0.0005615	0.90488	0.00050795	1.9052	0.0010694	561.3375308299	16.891	0.096886	16.891	16.846	16.943	0					4	2	2	0	0	0	0.06456	1	4114	4114		104.42	40.216	1	52866			44452	2401	29460	29577	45020	45020					0.10493980294063476
TVFLSTWNK	9	Unmodified	_TVFLSTWNK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2958984375	2	548.295299	1094.57605	1.7825	0.00097736	-1.2095	-0.00066316	0.57306	0.00031421	548.2948663288811	40.436	0.40211	40.436	40.34	40.742	0					40	16	3	0	0	0	0.048471	1	15922	15922		95.815	41.039	1	564300			44453	6453	29461	29578	45021	45021					0.032540294773070855
TVFLSTWNK	9	Unmodified	_TVFLSTWNK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.295654296875	2	548.295299	1094.57605	1.8643	0.0010222	-1.3076	-0.00071693	0.55669	0.00030523	548.2945374179426	40.399	0.46133	40.399	40.257	40.718	0					23	10	3	0	0	0	0.028876	1	16025	16025		110.12	27.879	1	857570			44454	6453	29461	29578	45022	45022					0.032540294773070855
TVFNVVTQ	8	Unmodified	_TVFNVVTQ_					0	0	0		ENST00000378535.4_1_12:88889468-88889528:-|nuORF	ENST00000378535.4_1_12:88889468-88889528:-|nuORF	ENST00000378535.4_1_12:88889468-88889528:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	454.247802734375	2	454.247818	906.481082	0.70809	0.00032165	-1.1932	-0.00054201	-0.4851	-0.00022036	454.2474718576898	30.957	0.34999	30.957	30.742	31.092	0					12	8	2	0	0	0	0.62915	1	11214	11214		44.377	3.599	1	161090			44455	9070	29462	29579	45023	45023					0.024100960061332444
TVFPKAKQVKK	11	Unmodified	_TVFPKAKQVKK_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant;DDX21|p.N117Mfs*9|1|0.26|ENSG00000165732|chr10:68960063-68960063|A/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2713317871094	3	425.271207	1272.79179	-0.37011	-0.0001574	0.50351	0.00021413	0.13339	5.6729E-05	425.27143894576784	17.355	0.25543	17.355	17.166	17.421	0					10	5	3	0	0	0	0.69004	1	5158	5158		28.577	4.3449	1	103080			44456	5826	29463	29580	45024	45024					0.1663079066197497
TVFPKAKQVKK	11	Unmodified	_TVFPKAKQVKK_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant;DDX21|p.N117Mfs*9|1|0.26|ENSG00000165732|chr10:68960063-68960063|A/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	425.2710266113281	3	425.271207	1272.79179	-0.37913	-0.00016123	-0.10696	-4.5488E-05	-0.48609	-0.00020672	425.27098179833087	17.342	0.40825	17.342	17.09	17.498	0					15	8	3	0	0	0	0.64323	1	4997	4997		33.039	9.6615	1	143810			44457	5826	29463	29580	45025	45025					0.1663079066197497
TVFSGFTVNH	10	Unmodified	_TVFSGFTVNH_					0	0	0			REV__nc|ENSG00000030304|O15146-3|MUSK	REV__nc|ENSG00000030304|O15146-3|MUSK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7764282226562	2	554.774731	1107.53491	3.5835	0.001988	0.52911	0.00029354	4.1126	0.0022816	554.7751872672674	29.971	0.56248	29.971	29.715	30.277	0					32	11	4	0	0	0	0.17732	1	11008	11008		82.241	7.9855	1	2265800	+		44458	12965	29464	29581	45026	45026					-0.014557315621459566
TVFSGRGKR	9	Unmodified	_TVFSGRGKR_					0	0	0		ENST00000314134.3_1_11:45825971-45826406:+|nuORF	ENST00000314134.3_1_11:45825971-45826406:+|nuORF	ENST00000314134.3_1_11:45825971-45826406:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.29345703125	2	504.290882	1006.56721	-0.38265	-0.00019297	4.3912	0.0022144	4.0085	0.0020215	504.29295064991913	46.42	0.08419	46.42	46.38	46.464	0					5	3	2	0	0	0	0.25716	1	18574	18574		54.776	13.998	1	28177			44459	8573	29465	29582	45027	45027					0.0641910063151272
TVFVKEKNP	9	Unmodified	_TVFVKEKNP_					0	0	0		PCDHA3|p.N467K|1|0.25|ENSG00000255408|chr5:140802598-140802598|C/A|missense_variant	PCDHA3|p.N467K|1|0.25|ENSG00000255408|chr5:140802598-140802598|C/A|missense_variant	PCDHA3|p.N467K|1|0.25|ENSG00000255408|chr5:140802598-140802598|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3030395507812	2	531.303124	1060.5917	-0.16016	-8.5092E-05	1.1616	0.00061718	1.0015	0.00053209	531.3038443514785	28.817	0.25197	28.817	28.714	28.966	0					16	9	2	0	0	0	0.2873	1	9316	9316		51.335	1.8939	1	236220			44460	11903	29466	29583	45028	45028					0.06382315994369492
TVGAAGWK	8	Unmodified	_TVGAAGWK_					0	0	0		ENSG00000128951|ENST00000331200|DUT	ENSG00000128951|ENST00000331200|DUT	ENSG00000128951|ENST00000331200|DUT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	395.2163391113281	2	395.216321	788.418088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.842	1	21.842	21.342	22.342	0								0	0	0	1.7419	1	6337	6337		60.294	21.272	1				44461	3574	29467	29584	45029	45029					0.015415750087527158
TVGAFFASK	9	Unmodified	_TVGAFFASK_					0	0	0		ENSG00000129473|ENST00000250405|BCL2L2	ENSG00000129473|ENST00000250405|BCL2L2	ENSG00000129473|ENST00000250405|BCL2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2508544921875	2	464.25036	926.486168	0.087093	4.0433E-05	0.42806	0.00019873	0.51516	0.00023916	464.25067382342365	35.55	0.1615	35.55	35.467	35.629	0					6	4	2	0	0	0	0.30841	1	13349	13349		49.536	11.725	1	57562			44462	3599	29468	29585	45030	45030					0.01998399868762135
TVGAFFASK	9	Unmodified	_TVGAFFASK_					0	0	0		ENSG00000129473|ENST00000250405|BCL2L2	ENSG00000129473|ENST00000250405|BCL2L2	ENSG00000129473|ENST00000250405|BCL2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2506408691406	2	464.25036	926.486168	-0.14115	-6.5529E-05	0.2947	0.00013681	0.15355	7.1284E-05	464.2507307616914	35.51	0.19056	35.51	35.433	35.624	0					10	5	3	0	0	0	0.34452	1	13776	13776		46.457	9.2977	1	108190			44463	3599	29468	29585	45031	45031					0.01998399868762135
TVGAFFASK	9	Unmodified	_TVGAFFASK_					0	0	0		ENSG00000129473|ENST00000250405|BCL2L2	ENSG00000129473|ENST00000250405|BCL2L2	ENSG00000129473|ENST00000250405|BCL2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2501220703125	2	464.25036	926.486168	-0.48301	-0.00022424	-0.13634	-6.3294E-05	-0.61935	-0.00028753	464.25022611203184	35.441	0.32355	35.441	35.33	35.654	0					14	6	3	0	0	0	0.40353	1	13693	13693		41.427	8.6142	1	374310			44464	3599	29468	29585	45032	45032					0.01998399868762135
TVGDVLEAK	9	Unmodified	_TVGDVLEAK_					0	0	0		nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000440965.1_1_2:202003207-202003609:-|nuORF;ENST00000418838.1_1_X:40219448-40219874:-|nuORF	nc|ENSG00000106348|P20839-2|IMPDH1	nc|ENSG00000106348|P20839-2|IMPDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2581787109375	2	466.258382	930.502212	-0.13489	-6.2895E-05	-0.45608	-0.00021265	-0.59097	-0.00027554	466.2582124743276	29.725	0.41018	29.725	29.522	29.933	0					25	8	4	0	0	0	0.061298	1	11023	11023		91.265	18.386	1	2071700			44465	2436	29469	29586	45033	45033					0.03418061315005616
TVGDVLEAK	9	Unmodified	_TVGDVLEAK_					0	0	0		nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000440965.1_1_2:202003207-202003609:-|nuORF;ENST00000418838.1_1_X:40219448-40219874:-|nuORF	nc|ENSG00000106348|P20839-2|IMPDH1	nc|ENSG00000106348|P20839-2|IMPDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.25799560546875	2	466.258382	930.502212	-0.17934	-8.3617E-05	-0.58709	-0.00027373	-0.76642	-0.00035735	466.2581255053928	29.481	0.21393	29.481	29.39	29.604	0					9	5	2	0	0	0	0.04067	1	9913	9913		98.582	2.7668	1	323870			44466	2436	29469	29586	45034	45034					0.03418061315005616
TVGDVLEAK	9	Unmodified	_TVGDVLEAK_					0	0	0		nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000440965.1_1_2:202003207-202003609:-|nuORF;ENST00000418838.1_1_X:40219448-40219874:-|nuORF	nc|ENSG00000106348|P20839-2|IMPDH1	nc|ENSG00000106348|P20839-2|IMPDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2585754394531	2	466.258382	930.502212	-0.49868	-0.00023251	0.2953	0.00013769	-0.20338	-9.4825E-05	466.25852682804697	29.657	0.5075	29.657	29.456	29.963	0					25	10	3	0	0	0	0.026848	1	10877	10877		112.11	27.192	1	3323300			44467	2436	29469	29586	45035	45035					0.03418061315005616
TVGEVFYTK	9	Unmodified	_TVGEVFYTK_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.274169921875	2	522.274032	1042.53351	1.5232	0.00079552	-0.68102	-0.00035568	0.84215	0.00043984	522.2736879200314	32.297	0.22173	32.297	32.233	32.455	0					21	9	3	0	0	0	0.18416	1	10423	10423		63.534	14.092	1	344190			44468	7696	29470	29587	45036	45036					0.013946343490943036
TVGEVFYTK	9	Unmodified	_TVGEVFYTK_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2744140625	2	522.274032	1042.53351	1.6139	0.00084289	-0.86011	-0.00044921	0.75377	0.00039368	522.27350902262	32.546	0.37357	32.546	32.424	32.798	0					24	9	4	0	0	0	0.026848	1	11949	11949		112.11	53.325	1	2206200			44469	7696	29470	29587	45037	45037					0.013946343490943036
TVGEVFYTK	9	Unmodified	_TVGEVFYTK_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2739868164062	2	522.274032	1042.53351	1.7859	0.00093271	-1.4677	-0.00076657	0.31812	0.00016614	522.2734075074696	32.559	0.40101	32.559	32.401	32.802	0					26	10	3	0	0	0	0.11411	1	12361	12361		76.17	28.512	1	2259500			44470	7696	29470	29587	45038	45038					0.013946343490943036
TVGEVFYTK	9	Unmodified	_TVGEVFYTK_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2738037109375	2	522.274032	1042.53351	1.4896	0.000778	0.23315	0.00012177	1.7228	0.00089977	522.2742453549471	32.348	0.19059	32.348	32.25	32.44	0					11	5	3	0	0	0	0.46194	1	11227	11227		36.447	3.6343	1	139160			44471	7696	29470	29587	45039	45039					0.013946343490943036
TVGEVFYTK	9	Unmodified	_TVGEVFYTK_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2747192382812	2	522.274032	1042.53351	1.0769	0.00056245	-0.31635	-0.00016522	0.76057	0.00039723	522.2739172824362	32.359	0.27818	32.359	32.239	32.517	0					21	8	4	0	0	0	0.012936	1	11237	11237		134.77	62.888	1	424880			44472	7696	29470	29587	45040	45040					0.013946343490943036
TVGEVFYTK	9	Unmodified	_TVGEVFYTK_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2744140625	2	522.274032	1042.53351	0.42797	0.00022352	0.36809	0.00019224	0.79606	0.00041576	522.274157434043	32.531	0.41713	32.531	32.371	32.789	0					20	8	4	0	0	0	0.012936	1	12262	12262		134.77	72.658	1	1533500			44473	7696	29470	29587	45041	45041					0.013946343490943036
TVGEVFYTK	9	Unmodified	_TVGEVFYTK_					0	0	0		SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant;SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;SLC44A4|p.F618Sfs*25|1|0.43|ENSG00000204385|chr6:31864889-31864889|A/-|frameshift_variant;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;SLC44A4|p.N144Kfs*55|2|0.31|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	SLC44A4|p.G398Afs*7|1|0.29|ENSG00000204385|chr6:31869197-31869197|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.274169921875	2	522.274032	1042.53351	1.6251	0.00084876	-1.2355	-0.00064529	0.3896	0.00020348	522.2734268271043	32.518	0.51861	32.518	32.253	32.771	0					29	10	5	0	0	0	0.026848	1	12257	12257		112.11	47.9	1	3370500			44474	7696	29470	29587	45042	45042					0.013946343490943036
TVGFNRGGRQ	10	Unmodified	_TVGFNRGGRQ_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|44|2|sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|44|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.290283203125	2	546.288871	1090.56319	3.7811	0.0020656	-1.2478	-0.00068164	2.5333	0.0013839	546.2883719433514	33.176	0.16178	33.176	33.121	33.283	0					7	3	3	0	0	0	0.32758	1	12600	12600		64.207	11.118	1	750300	+		44475	20814	29471	29588	45043	45043					0.021530111378069705
TVGGFALSIKG	11	Unmodified	_TVGGFALSIKG_					0	0	0		SNTG1|p.G69A|1|0.18|ENSG00000147481|chr8:50438586-50438586|G/C|missense_variant	SNTG1|p.G69A|1|0.18|ENSG00000147481|chr8:50438586-50438586|G/C|missense_variant	SNTG1|p.G69A|1|0.18|ENSG00000147481|chr8:50438586-50438586|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.3033447265625	2	525.303124	1048.5917	0.56963	0.00029923	-2.577	-0.0013537	-2.0073	-0.0010545	525.8025059947736	38.594	0.26282	38.594	38.449	38.712	0					12	5	3	0	0	0	0.60656	1	15201	15201		36.447	0	1	192210			44476	22431	29472	29589	45044	45044					0.06934315994362805
TVGGGRGART	10	Unmodified	_TVGGGRGART_					0	0	0			REV__ENST00000375946.8_1_10:27444162-27444405:+|nuORF	REV__ENST00000375946.8_1_10:27444162-27444405:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2580871582031	2	466.25704	930.499526	0.43493	0.00020279	1.3652	0.00063654	1.8001	0.00083933	466.2579281677562	29.695	0.69901	29.695	29.245	29.944	0					39	17	4	0	0	0	0.09653	1	10625	10625		96.034	7.8567	1	2526300	+		44477	18711	29473	29590	45045	45045					0.03149650700709117
TVGGLIYWI	9	Unmodified	_TVGGLIYWI_					0	0	0		CD207|p.A246V|1|0.23|ENSG00000116031|chr2:70831800-70831800|G/A|missense_variant	CD207|p.A246V|1|0.23|ENSG00000116031|chr2:70831800-70831800|G/A|missense_variant	CD207|p.A246V|1|0.23|ENSG00000116031|chr2:70831800-70831800|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.2878112792969	2	511.289485	1020.56442	-0.38527	-0.00019699	-3.7249	-0.0019045	-4.1102	-0.0021015	511.2874459194768	22.01	0.097618	22.01	21.949	22.047	0					5	3	2	0	0	0	0.41113	1	6421	6421		25.45	0	1	55714			44478	425	29474	29591	45046	45046					0.05495832453971161
TVGHEVQIK	9	Unmodified	_TVGHEVQIK_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7850341796875	2	505.785099	1009.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.489	1	20.489	19.989	20.989	0								0	0	0	0.14033	1	5770	5770		62.107	9.1707	1		+		44479	14693	29475	29592	45047	45047					0.05124858817521272
TVGKFIQY	8	Unmodified	_TVGKFIQY_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2662048339844	2	478.26601	954.517468	-0.65507	-0.0003133	2.7352	0.0013082	2.0801	0.00099486	478.2659173942955	35.745	0.26125	35.745	35.637	35.898	0					10	5	3	0	0	0	0.73426	1	13837	13837		29.15	2.3535	1	107350			44480	3148	29476	29593	45048	45048					0.03838972902849491
TVGLDKFTK	9	Unmodified	_TVGLDKFTK_					0	0	0			REV__ENST00000544497.1_1_12:12966301-12967184:+|nuORF	REV__ENST00000544497.1_1_12:12966301-12967184:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7903747558594	2	504.78985	1007.56515	-0.80665	-0.00040719	0.96611	0.00048768	0.15947	8.0497E-05	504.7905095679121	31.794	0.18341	31.794	31.732	31.915	0					10	7	2	0	0	0	0.44593	1	10571	10571		37.812	0	1	139800	+		44481	17568	29477	29594	45049	45049					0.061666271030503594
TVGLDKFTK	9	Unmodified	_TVGLDKFTK_					0	0	0			REV__ENST00000544497.1_1_12:12966301-12967184:+|nuORF	REV__ENST00000544497.1_1_12:12966301-12967184:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.789794921875	2	504.78985	1007.56515	1.2176	0.00061461	-1.2874	-0.00064986	-0.069843	-3.5256E-05	504.7894235955352	31.992	0.31789	31.992	31.902	32.219	0					12	6	3	0	0	0	0.037924	1	12015	12015		101.25	13.556	1	550020	+		44482	17568	29477	29594	45050	45050					0.061666271030503594
TVGPSSVV	8	Unmodified	_TVGPSSVV_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2106018066406	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.226	1	52.226	51.726	52.726	0								0	0	0	1.7419	1	20318	20318		26.796	6.3143	1		+		44483	16937	29478	29595	45051	45051					0.01934449052009768
TVGQSSLKP	9	Unmodified	_TVGQSSLKP_					0	0	0		ENSG00000184305|ENST00000509176|CCSER1;CCSER1|p.R822Q|1|0.22|ENSG00000184305|chr4:91598819-91598819|G/A|missense_variant	ENSG00000184305|ENST00000509176|CCSER1	ENSG00000184305|ENST00000509176|CCSER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.75830078125	2	458.758549	915.502546	0.72215	0.00033129	-1.489	-0.0006831	-0.76687	-0.00035181	458.7580267123069	21.366	1.2559	21.366	20.863	22.119	0					44	25	4	0	0	0	0.22837	1	7306	7306		58.23	13.853	1	40149000			44484	7006	29479	29596	45052	45052					0.041414810348555875
TVGTESKVQ	9	Unmodified	_TVGTESKVQ_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-4|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.75347900390625	2	474.753464	947.492375	-1.5838	-0.00075189	1.0015	0.00047548	-0.58222	-0.00027641	474.75386002340684	17.135	0.41551	17.135	16.869	17.284	0					31	14	3	0	0	0	0.30951	1	4180	4180		49.442	2.2139	1	603370			44485	2535	29480	29597	45053	45053					0.01652873309626557
TVGTFGVTAVS	11	Unmodified	_TVGTFGVTAVS_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7774047851562	2	519.776939	1037.53933	1.4466	0.00075192	-0.79752	-0.00041453	0.64911	0.00033739	519.7765426279688	26.753	0.29611	26.753	26.658	26.954	0					30	10	4	0	0	0	0.67178	1	8151	8151		30.318	1.1682	1	1521700			44486	1890	29481	29598	45054	45054					0.022057328607616
TVGVLLAAK	9	Unmodified	_TVGVLLAAK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.2840881347656	2	436.284203	870.553853	0.061285	2.6738E-05	0.47501	0.00020724	0.5363	0.00023398	436.2842847237196	32.66	0.22072	32.66	32.555	32.775	0					8	5	2	0	0	0	0.16002	1	11995	11995		66.429	27.623	1	87030			44487	4281	29482	29599	45055	45055					0.11339849799560398
TVGVLLAAK	9	Unmodified	_TVGVLLAAK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.28399658203125	2	436.284203	870.553853	-0.42072	-0.00018355	-0.28879	-0.000126	-0.70951	-0.00030955	436.28411715746483	32.574	0.24092	32.574	32.46	32.701	0					12	6	3	0	0	0	0.4966	1	12402	12402		32.812	0.85756	1	115850			44488	4281	29482	29599	45056	45056					0.11339849799560398
TVHARTLTTL	10	Unmodified	_TVHARTLTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.8256225585938	2	556.824755	1111.63496	0.56108	0.00031242	0.75481	0.0004203	1.3159	0.00073272	556.8255058298818	16.188	0.10145	16.188	16.135	16.236	0					4	2	2	0	0	0	0.59277	1	4348	4348		35.152	2.3396	1	196910			44489	1076	29483	29600	45057	45057					0.0836050577165679
TVHGVTQAF	9	Unmodified	_TVHGVTQAF_					0	0	0		nc|ENSG00000006015|Q96EN9-3|REX1BD;nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	nc|ENSG00000006015|Q96EN9-3|REX1BD	nc|ENSG00000006015|Q96EN9-3|REX1BD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2510070800781	2	480.250892	958.48723	0.044945	2.1585E-05	-0.13603	-6.5326E-05	-0.091081	-4.3742E-05	480.25079696120275	29.221	0.14139	29.221	29.151	29.292	0					9	5	2	0	0	0	0.24095	1	9202	9202		56.721	5.3856	1	58500			44490	971	29484	29601	45058	45058					0.006326142376565258
TVHGVTQAF	9	Unmodified	_TVHGVTQAF_					0	0	0		nc|ENSG00000006015|Q96EN9-3|REX1BD;nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	nc|ENSG00000006015|Q96EN9-3|REX1BD	nc|ENSG00000006015|Q96EN9-3|REX1BD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2505798339844	2	480.250892	958.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.271	1	29.271	28.771	29.771	0								0	0	0	0.22284	1	9514	9514		47.657	6.2307	1				44491	971	29484	29601	45059	45059					0.006326142376565258
TVHGVTQAF	9	Unmodified	_TVHGVTQAF_					0	0	0		nc|ENSG00000006015|Q96EN9-3|REX1BD;nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	nc|ENSG00000006015|Q96EN9-3|REX1BD	nc|ENSG00000006015|Q96EN9-3|REX1BD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2508850097656	2	480.250892	958.48723	0.67444	0.0003239	-0.3621	-0.0001739	0.31234	0.00015	480.2508304665032	29.514	0.64145	29.514	29.367	30.008	0					25	13	4	0	0	0	0.16806	1	10947	10947		65.465	21.349	1	1151400			44492	971	29484	29601	45060	45060					0.006326142376565258
TVHHIIGNE	9	Unmodified	_TVHHIIGNE_					0	0	0			REV__PREX2|p.S552Kfs*6|1|0.33|ENSG00000046889|chr8:68080448-68080449|-/A|frameshift_variant	REV__PREX2|p.S552Kfs*6|1|0.33|ENSG00000046889|chr8:68080448-68080449|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2682800292969	2	510.267073	1018.51959	-0.4502	-0.00022972	1.3294	0.00067833	0.87915	0.0004486	510.26790568082936	13.118	0.15287	13.118	13.057	13.21	0					13	8	2	0	0	0	0.24095	1	2664	2664		56.721	5.3856	1	107190	+		44493	13007	29485	29602	45061	45061					0.011074016406723786
TVHHIIGNE	9	Unmodified	_TVHHIIGNE_					0	0	0			REV__PREX2|p.S552Kfs*6|1|0.33|ENSG00000046889|chr8:68080448-68080449|-/A|frameshift_variant	REV__PREX2|p.S552Kfs*6|1|0.33|ENSG00000046889|chr8:68080448-68080449|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2671203613281	2	510.267073	1018.51959	1.1922	0.00060835	-0.49068	-0.00025038	0.70154	0.00035797	510.266983998117	13.289	0.41939	13.289	13.234	13.653	0					14	9	2	0	0	0	0.0792	1	3213	3213		84.916	0	1	1175100	+		44494	13007	29485	29602	45062	45062					0.011074016406723786
TVHILEMY	8	Unmodified	_TVHILEMY_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;DOCK5|p.S612Kfs*4|1|0.33|ENSG00000147459|chr8:25325472-25325473|-/C|frameshift_variant;nc|ENSG00000147459|Q9H7D0-2|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2572021484375	2	503.257328	1004.5001	-0.4577	-0.00023034	1.4479	0.00072867	0.9902	0.00049833	503.25804639796706	45.608	0.52052	45.608	45.246	45.767	0					29	20	2	0	0	0	0.55361	1	18178	18178		54.765	0	1	99484			44495	4782	29486	29603	45063	45063					-0.001966906944517177
TVHITGFGAL	10	Unmodified	_TVHITGFGAL_					0	0	0		ENSG00000187054|ENST00000508048|TMPRSS11A;nc|ENSG00000187054|Q6ZMR5-1|TMPRSS11A	ENSG00000187054|ENST00000508048|TMPRSS11A	ENSG00000187054|ENST00000508048|TMPRSS11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.1903991699219	3	339.190553	1014.54983	0.22727	7.7088E-05	-0.41881	-0.00014206	-0.19154	-6.4969E-05	339.19040188428283	26.059	0.40385	26.059	25.815	26.219	0					24	12	3	0	0	0	0.67199	1	7836	7836		23.523	0	1	423000			44496	7178	29487	29604	45064	45064					0.04313760305853975
TVHLRVGH	8	Unmodified	_TVHLRVGH_					0	0	0			REV__ENSG00000197046|ENST00000389474|SIGLEC15	REV__ENSG00000197046|ENST00000389474|SIGLEC15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7691955566406	2	459.767043	917.519533	0.07908	3.6359E-05	-2.102	-0.00096644	-2.0229	-0.00093008	459.76617017263993	23.938	0.25695	23.938	23.849	24.106	0					19	8	3	0	0	0	0.72381	1	7061	7061		30.504	2.2494	1	526860	+		44497	17305	29488	29605	45065	45065					0.05747446431325898
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.7977600097656	2	490.798009	979.581465	-0.13482	-6.617E-05	-0.33332	-0.00016359	-0.46814	-0.00022976	490.79783048496637	22.36	0.1655	22.36	22.279	22.445	0					7	4	2	0	0	0	0.056004	1	6304	6304		93.143	39.792	1	456110			44498	2606	29489	29606	45066	45066					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	327.53448486328125	3	327.534431	979.581465	0.28851	9.4495E-05	0.06104	1.9993E-05	0.34955	0.00011449	327.5344364600337	22.354	0.26126	22.354	22.27	22.532	0					9	7	2	0	0	0	0.13267	1	6310	6310		88.177	31.545	1	656830			44499	2606	29489	29606	45067	45067					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	327.5346374511719	3	327.534431	979.581465	0.52927	0.00017335	0.47685	0.00015619	1.0061	0.00032954	327.53459607599825	22.685	0.50054	22.685	22.548	23.049	0					27	12	4	0	0	0	0.034359	1	7409	7409		145.16	60.24	1	2733700			44500	2606	29489	29606	45068	45068					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.7975769042969	2	490.798009	979.581465	-0.065855	-3.2321E-05	-0.76286	-0.00037441	-0.82872	-0.00040673	490.7975976186333	22.6	0.30869	22.6	22.468	22.777	0					17	6	4	0	0	0	0.0071053	1	7670	7670		148.99	72.213	1	2473900			44501	2606	29489	29606	45069	45069					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.5343017578125	3	327.534431	979.581465	0.55151	0.00018064	-0.68999	-0.000226	-0.13848	-4.5357E-05	327.53418787452205	22.592	0.41064	22.592	22.434	22.845	0					15	8	3	0	0	0	0.0792	1	7678	7678		112.41	42.783	1	1143800			44502	2606	29489	29606	45070	45070					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7983093261719	2	490.798009	979.581465	0.59506	0.00029205	-0.10338	-5.0738E-05	0.49168	0.00024132	490.7978619838767	22.445	0.28977	22.445	22.345	22.635	0					13	6	3	0	0	0	0.070005	1	6696	6696		88.177	31.456	1	394640			44503	2606	29489	29606	45071	45071					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7978820800781	2	490.798009	979.581465	-0.55345	-0.00027163	0.0026039	1.278E-06	-0.55084	-0.00027035	490.79798251741994	22.597	0.31605	22.597	22.489	22.805	0					17	6	4	0	0	0	0.022525	1	7529	7529		117.81	51.382	1	4718700			44504	2606	29489	29606	45072	45072					0.09085753059798662
TVHPDPRTP	9	Unmodified	_TVHPDPRTP_					0	0	0		COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant;COL15A1|p.E1069Rfs*84|1|0.36|ENSG00000204291|chr9:99056264-99056264|A/-|frameshift_variant;COL15A1|p.L1176Ifs*39|1|0.32|ENSG00000204291|chr9:99062087-99062088|-/A|frameshift_variant;ENSG00000204291|ENST00000375001|COL15A1;COL15A1|p.A345Lfs*13|1|0.27|ENSG00000204291|chr9:99000916-99000916|G/-|frameshift_variant;COL15A1|p.P575Lfs*23|1|0.03|ENSG00000204291|chr9:99022112-99022112|C/-|frameshift_variant;COL15A1|p.K708Rfs*44|1|0.31|ENSG00000204291|chr9:99035053-99035053|A/-|frameshift_variant	COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2666320800781	2	510.267073	1018.51959	0.27502	0.00014034	0.13087	6.6778E-05	0.40589	0.00020711	510.26728252122706	13.075	0.14802	13.075	13.007	13.155	0					9	7	2	0	0	0	0.22377	1	2598	2598		58.782	0	1	102140			44505	596	29490	29607	45073	45073					0.011074016406610099
TVHVDELCP	9	Unmodified	_TVHVDELCP_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	338.16259765625	3	338.163787	1011.46953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.76	1	43.76	43.26	44.26	0								0	0	0	0.36766	1	15124	15124		14.865	4.2781	1				44506	2636	29491	29608	45074	45074					-0.03574469079501341
TVIASALQL	9	Unmodified	_TVIASALQL_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.27874755859375	2	458.279118	914.543683	-2.6456	-0.0012124	2.0351	0.00093265	-0.61048	-0.00027977	458.28010016295696	34.157	0.30475	34.157	34.015	34.32	0					13	9	2	0	0	0	0.35021	1	12040	12040		45.972	3.5761	1	197240	+		44507	15200	29492	29609	45075	45075					0.08299242074338053
TVICSTINK	9	Carbamidomethyl (C)	_TVIC(Carbamidomethyl (C))STINK_	TVIC(1)STINK		TVIC(86)STINK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2793579101562	2	518.278792	1034.54303	1.3402	0.00069458	-0.82267	-0.00042637	0.5175	0.00026821	518.2785125172137	25.022	0.21293	25.022	24.902	25.115	0					18	5	5	0	0	0	0.076532	1	8492	8492		85.862	11.607	1	1684100			44508	42	29493	29610	45076	45076	0				0.027140793629769178
TVICSTINK	9	Carbamidomethyl (C)	_TVIC(Carbamidomethyl (C))STINK_	TVIC(1)STINK		TVIC(75)STINK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.280029296875	2	518.278792	1034.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.779	1	24.779	24.279	25.279	0								0	0	0	0.088368	1	7625	7625		75.043	14.925	1				44509	42	29493	29610	45077	45077	0				0.027140793629769178
TVICSTINK	9	Carbamidomethyl (C)	_TVIC(Carbamidomethyl (C))STINK_	TVIC(1)STINK		TVIC(100)STINK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.279052734375	2	518.278792	1034.54303	1.0588	0.00054874	-0.82263	-0.00042635	0.23615	0.00012239	518.2784326321242	25.016	0.11693	25.016	24.907	25.024	0					6	2	3	0	0	0	0.035062	1	8813	8813		104.06	34.429	1	363440			44510	42	29493	29610	45078	45078	0				0.027140793629769178
TVICSTINK	9	Carbamidomethyl (C)	_TVIC(Carbamidomethyl (C))STINK_	TVIC(1)STINK		TVIC(83)STINK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.279296875	2	518.278792	1034.54303	1.2624	0.00065429	-0.43338	-0.00022461	0.82905	0.00042968	518.2787208426789	24.836	0.15147	24.836	24.741	24.892	0					5	3	2	0	0	0	0.085655	1	7817	7817		82.75	10.873	1	163360			44511	42	29493	29610	45079	45079	0				0.027140793629769178
TVICSTINK	9	Carbamidomethyl (C)	_TVIC(Carbamidomethyl (C))STINK_	TVIC(1)STINK		TVIC(73)STINK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.2791137695312	2	518.278792	1034.54303	0.94584	0.00049021	-0.036136	-1.8728E-05	0.9097	0.00047148	518.278952593943	24.819	0.14945	24.819	24.771	24.92	0					7	3	3	0	0	0	0.12834	1	7808	7808		72.879	6.45	1	222240			44512	42	29493	29610	45080	45080	0				0.027140793629769178
TVICSTINK	9	Carbamidomethyl (C)	_TVIC(Carbamidomethyl (C))STINK_	TVIC(1)STINK		TVIC(140)STINK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.279052734375	2	518.278792	1034.54303	0.25484	0.00013208	-0.42927	-0.00022248	-0.17444	-9.0407E-05	518.2786768817964	24.921	0.30532	24.921	24.771	25.076	0					14	6	4	0	0	0	0.011389	1	8670	8670		138.06	24.651	1	1026100			44513	42	29493	29610	45081	45081	0				0.027140793629769178
TVICSTINK	9	Carbamidomethyl (C)	_TVIC(Carbamidomethyl (C))STINK_	TVIC(1)STINK		TVIC(76)STINK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.279052734375	2	518.278792	1034.54303	1.5789	0.00081832	-1.4989	-0.00077685	0.080025	4.1475E-05	518.278485158917	24.955	0.30806	24.955	24.854	25.162	0					12	6	3	0	0	0	0.11411	1	8684	8684		76.17	15.198	1	1695600			44514	42	29493	29610	45082	45082	0				0.027140793629769178
TVIDSQTHY	9	Unmodified	_TVIDSQTHY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2566528320312	2	532.256371	1062.49819	1.718	0.00091441	0.29154	0.00015518	2.0095	0.0010696	532.2558119079468	27.125	0.30949	27.125	26.961	27.27	0					17	6	4	0	0	0	0.085655	1	9798	9798		82.75	19.444	1	598030			44515	5914	29494	29611	45083	45083					-0.030560281787074928
TVIDSQTHY	9	Unmodified	_TVIDSQTHY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2568969726562	2	532.256371	1062.49819	1.1556	0.00061507	-0.85579	-0.0004555	0.29979	0.00015957	532.2561580302106	26.906	0.16745	26.906	26.82	26.988	0					9	4	3	0	0	0	0.25716	1	8741	8741		54.776	0	1	170680			44516	5914	29494	29611	45084	45084					-0.030560281787074928
TVIDSQTHY	9	Unmodified	_TVIDSQTHY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2567749023438	2	532.256371	1062.49819	0.72002	0.00038324	0.097473	5.1881E-05	0.81749	0.00043512	532.2563495837633	27.062	0.1677	27.062	26.952	27.12	0					8	3	3	0	0	0	0.026538	1	9632	9632		112.41	52.293	1	589140			44517	5914	29494	29611	45085	45085					-0.030560281787074928
TVIDSQTHY	9	Unmodified	_TVIDSQTHY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2566528320312	2	532.256371	1062.49819	1.7319	0.00092182	-1.3	-0.00069195	0.43187	0.00022987	532.2557642621861	27.044	0.26851	27.044	26.936	27.204	0					9	5	2	0	0	0	0.047855	1	9644	9644		96.034	32.5	1	1139300			44518	5914	29494	29611	45086	45086					-0.030560281787074928
TVIDSQTHYR	10	Unmodified	_TVIDSQTHYR_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	610.30712890625	2	610.306926	1218.5993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.018	1	22.018	21.518	22.518	0								0	0	0	0.39264	1	6415	6415		32.751	8.5478	1				44519	5914	29495	29612	45087	45087					-0.0012557647601170174
TVIDSQTHYR	10	Unmodified	_TVIDSQTHYR_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	610.3075561523438	2	610.306926	1218.5993	0.48191	0.00029411	0.36289	0.00022148	0.84481	0.00051559	610.3072671725827	22.196	0.16665	22.196	22.086	22.253	0					8	3	3	0	0	0	0.06456	1	7464	7464		104.42	56.464	1	252750			44520	5914	29495	29612	45088	45088					-0.0012557647601170174
TVIEEHLGK	9	Unmodified	_TVIEEHLGK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.284912109375	2	513.284931	1024.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.166	1	24.166	23.666	24.666	0								0	0	0	0.3119	1	8423	8423		32.812	3.6629	1				44521	4718	29496	29613	45089	45089					0.04401439097682669
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2938232421875	2	535.293091	1068.57163	1.227	0.00065681	-0.49165	-0.00026317	0.73535	0.00039363	535.2927580041257	24.448	0.38591	24.448	24.343	24.729	0					21	11	3	0	0	0	0.02429	1	7204	7204		98.629	31.136	1	453130			44522	4688	29497	29614	45090	45090					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.1978454589844	3	357.197819	1068.57163	0.13346	4.7673E-05	-0.47953	-0.00017129	-0.34607	-0.00012362	357.197680935207	24.415	0.28179	24.415	24.334	24.616	0					24	8	4	0	0	0	0.44593	1	7196	7196		37.812	1.3648	1	358810			44523	4688	29497	29614	45091	45091					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.293701171875	2	535.293091	1068.57163	2.2077	0.0011817	-1.8664	-0.00099908	0.34124	0.00018267	535.292285078753	24.756	0.54155	24.756	24.533	25.074	0					42	13	4	0	0	0	0.014413	1	8339	8339		115.49	27.798	1	4653600			44524	4688	29497	29614	45092	45092					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.29345703125	2	535.293091	1068.57163	-0.59261	-0.00031722	1.9908	0.0010657	1.3982	0.00074846	535.2939391907772	24.504	0.18762	24.504	24.374	24.562	0					14	6	3	0	0	0	0.13726	1	7485	7485		64.207	19.83	1	190810			44525	4688	29497	29614	45093	45093					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2938842773438	2	535.293091	1068.57163	1.8072	0.00096736	-0.46643	-0.00024968	1.3407	0.00071768	535.2928555549894	24.703	0.41343	24.703	24.494	24.907	0					21	8	4	0	0	0	0.021015	1	8687	8687		115.49	59.06	1	1523700			44526	4688	29497	29614	45094	45094					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	357.19805908203125	3	357.197819	1068.57163	0.49733	0.00017765	-0.39656	-0.00014165	0.10077	3.5996E-05	357.19773429800335	24.737	0.9136	24.737	24.528	25.442	0					50	18	5	0	0	0	0.25761	1	8655	8655		54.722	15.47	1	8763900			44527	4688	29497	29614	45095	45095					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.2943115234375	2	535.293091	1068.57163	1.0793	0.00057775	0.031855	1.7052E-05	1.1112	0.0005948	535.2930246530561	24.554	0.31471	24.554	24.386	24.701	0					19	7	4	0	0	0	0.099758	1	7644	7644		72.879	14.649	1	587340			44528	4688	29497	29614	45096	45096					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2935791015625	2	535.293091	1068.57163	1.8834	0.0010082	-1.6437	-0.00087985	0.23972	0.00012832	535.2924192284692	24.676	0.49905	24.676	24.513	25.012	0					36	10	5	0	0	0	0.021015	1	8524	8524		104.06	8.2416	1	5536400			44529	4688	29497	29614	45097	45097					0.04008565054414248
TVILPIKKK	9	Unmodified	_TVILPIKKK_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.3655395507812	2	520.365527	1038.7165	0.66572	0.00034642	-0.22359	-0.00011635	0.44213	0.00023007	520.3653297873259	21.986	0.29849	21.986	21.867	22.165	0					17	8	3	0	0	0	0.04067	1	6133	6133		104.75	19.387	1	573880			44530	4233	29498	29615	45098	45098					0.1986923320155256
TVILPIKKK	9	Unmodified	_TVILPIKKK_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.3650512695312	2	520.365527	1038.7165	0.068785	3.5793E-05	0.017489	9.1006E-06	0.086274	4.4894E-05	520.3655469154141	22.332	0.56945	22.332	22.197	22.766	0					27	13	4	0	0	0	0.032383	1	7225	7225		90.37	24.567	1	3189100			44531	4233	29498	29615	45099	45099					0.1986923320155256
TVILPIKKK	9	Unmodified	_TVILPIKKK_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.24603271484375	3	347.24611	1038.7165	0.50102	0.00017398	-0.65963	-0.00022905	-0.1586	-5.5074E-05	347.2458510023027	22.379	0.7332	22.379	22.197	22.93	0					32	17	4	0	0	0	0.36892	1	7226	7226		44.377	3.599	1	3398500			44532	4233	29498	29615	45100	45100					0.1986923320155256
TVILPIKKK	9	Unmodified	_TVILPIKKK_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3660888671875	2	520.365527	1038.7165	-0.22313	-0.00011611	0.87935	0.00045758	0.65622	0.00034148	520.3660427302784	22.196	0.36485	22.196	22.086	22.451	0					20	7	4	0	0	0	0.035106	2	7486	7461;7486		98.629	24.655	1	3242500			44533	4233	29498	29615	45101;45102	45102					0.1986923320155256
TVILPIKKK	9	Unmodified	_TVILPIKKK_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	347.2462463378906	3	347.24611	1038.7165	0.51565	0.00017906	-0.44925	-0.000156	0.066398	2.3057E-05	347.2459522565517	22.197	0.46402	22.197	22.086	22.55	0					28	9	5	0	0	0	0.24334	1	7485	7485		56.434	15.656	1	6139000			44534	4233	29498	29615	45103	45103					0.1986923320155256
TVIMPVFGIA	10	Unmodified	_TVIMPVFGIA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16553488-16553881:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16553488-16553881:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.2981567382812	2	524.298996	1046.58344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.609	1	24.609	24.109	25.109	0								0	0	0	0.4201	1	7289	7289		17.365	0	1				44535	1870;10497	29499	29616	45104	45104					0.062010457534142915
TVINMVLVK	9	Unmodified	_TVINMVLVK_					0	0	0		L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|9|2|sense	L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|9|2|sense	L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|9|2|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.8121032714844	2	508.81227	1015.60999	1.3271	0.00067525	-2.7188	-0.0013834	-1.3917	-0.00070811	508.81065145688973	44.825	0.25928	44.825	44.763	45.023	0					15	10	2	0	0	0	0.44593	1	17951	17951		37.812	1.3648	1	105940			44536	11278	29500	29617	45105	45105					0.10280734644720724
TVIQSTQGMYK	11	Unmodified	_TVIQSTQGMYK_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1;PGM2L1|p.S299Lfs*19|1|0.24|ENSG00000165434|chr11:74347192-74347192|A/-|frameshift_variant;PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	628.3193969726562	2	628.321188	1254.62782	0.19076	0.00011986	-1.6742	-0.0010519	-1.4834	-0.00093207	628.3199831287537	28.892	0.098324	28.892	28.814	28.912	0					6	3	2	0	0	0	0.054579	1	9065	9065		102.95	54.353	1	47391			44537	5795	29501	29618	45106	45106					0.01069405108933097
TVIQSTQGMYK	11	Unmodified	_TVIQSTQGMYK_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1;PGM2L1|p.S299Lfs*19|1|0.24|ENSG00000165434|chr11:74347192-74347192|A/-|frameshift_variant;PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	628.3213500976562	2	628.321188	1254.62782	1.3171	0.00082757	-1.6429	-0.0010323	-0.32576	-0.00020468	628.3202789049454	29.127	0.2111	29.127	29.034	29.245	0					14	5	4	0	0	0	0.0010046	1	10375	10375		133.75	59.587	1	424600			44538	5795	29501	29618	45107	45107					0.01069405108933097
TVIQSTQGMYK	11	Unmodified	_TVIQSTQGMYK_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1;PGM2L1|p.S299Lfs*19|1|0.24|ENSG00000165434|chr11:74347192-74347192|A/-|frameshift_variant;PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	628.3219604492188	2	628.321188	1254.62782	-0.7158	-0.00044975	0.97444	0.00061226	0.25863	0.00016251	628.8230248709474	28.901	0.14201	28.901	28.824	28.966	0					12	5	3	0	0	0	0.34891	1	9362	9362		57.149	10.692	1	137140			44539	5795	29501	29618	45108	45108					0.01069405108933097
TVIQSTQGMYK	11	Unmodified	_TVIQSTQGMYK_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1;PGM2L1|p.S299Lfs*19|1|0.24|ENSG00000165434|chr11:74347192-74347192|A/-|frameshift_variant;PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	628.3213500976562	2	628.321188	1254.62782	1.4173	0.0008905	-1.2645	-0.0007945	0.15278	9.5993E-05	628.3206198538717	29.154	0.24371	29.154	29.007	29.251	0					13	5	4	0	0	0	0.054579	1	10776	10776		102.95	39.528	1	906430			44540	5795	29501	29618	45109	45109					0.01069405108933097
TVIQSTQGMYK	11	Unmodified	_TVIQSTQGMYK_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1;PGM2L1|p.S299Lfs*19|1|0.24|ENSG00000165434|chr11:74347192-74347192|A/-|frameshift_variant;PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	628.3211059570312	2	628.321188	1254.62782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.986	1	28.986	28.486	29.486	0								0	0	0	0.4311	1	9695	9695		30.139	0.96908	1				44541	5795	29501	29618	45110	45110					0.01069405108933097
TVISAKEIK	9	Unmodified	_TVISAKEIK_					0	0	0		tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.8052062988281	2	494.8055	987.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.175	1	23.175	22.675	23.675	0								0	0	0	0.19847	1	7029	7029		51.193	0	1				44542	22648	29502	29619	45111	45111					0.10215200137133706
TVISGEALGI	10	Unmodified	_TVISGEALGI_					0	0	0		PIR|p.A150T|1|0.16|ENSG00000087842|chrX:15455880-15455880|C/T|missense_variant	PIR|p.A150T|1|0.16|ENSG00000087842|chrX:15455880-15455880|C/T|missense_variant	PIR|p.A150T|1|0.16|ENSG00000087842|chrX:15455880-15455880|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.27398681640625	2	480.274032	958.533512	-2.9248	-0.0014047	3.8538	0.0018509	0.92893	0.00044614	480.2754826392853	39.961	0.16782	39.961	39.852	40.02	0					11	9	2	0	0	0	0.46215	1	14225	14225		49.442	1.7842	1	65105			44543	11937	29503	29620	45112	45112					0.05258634349092972
TVISHNPETK	10	Unmodified	_TVISHNPETK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000525232.5_1_8:146016635-146016902:-|nuORF;ENST00000430538.1_1_21:31635868-31636186:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.2988891601562	2	563.29857	1124.58259	0.088451	4.9824E-05	0.25903	0.00014591	0.34748	0.00019573	563.2987879675802	17.676	0.26857	17.676	17.466	17.735	0					7	5	2	0	0	0	0.27406	1	5304	5304		70.399	33.952	1	107960			44544	5399	29504	29621	45113	45113					0.02527922638023483
TVITAIVPGR	10	Unmodified	_TVITAIVPGR_					0	0	0			REV__ENSG00000173705|ENST00000309558|SUSD5	REV__ENSG00000173705|ENST00000309558|SUSD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	342.8817443847656	3	342.88172	1025.62333	0.67879	0.00023275	-0.56896	-0.00019509	0.10983	3.766E-05	342.8814169340642	24.747	0.34161	24.747	24.533	24.874	0					19	8	5	0	0	0	0.66185	1	8362	8362		38.754	13.628	1	474980	+		44545	16528	29505	29622	45114	45114					0.11154308748336916
TVIVAVFVLLA	11	Unmodified	_TVIVAVFVLLA_					0	0	0		ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.2484436035156	3	382.249521	1143.72673	-0.5349	-0.00020447	-2.8719	-0.0010978	-3.4068	-0.0013023	382.2483900113736	30.667	0.16894	30.667	30.578	30.747	0					5	3	2	0	0	0	0.575	1	11379	11379		38.754	16.174	1	103690			44546	8132	29506	29623	45115	45115					0.16061796136136763
TVIYDKRL	8	Unmodified	_TVIYDKRL_					0	0	0		tr|U7T1H2|U7T1H2_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00643PE=4SV=1	tr|U7T1H2|U7T1H2_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00643PE=4SV=1	tr|U7T1H2|U7T1H2_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00643PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5343322753906	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.196	1	43.196	42.696	43.696	0								0	0	0	1.7419	1	16916	16916		20.947	0	1				44547	22917	29507	29624	45116	45116					0.0781033333993264
TVKAIIDV	8	Unmodified	_TVKAIIDV_					0	0	0			REV__ENST00000579357.1_1_17:43487543-43487738:-|nuORF	REV__ENST00000579357.1_1_17:43487543-43487738:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.7688903808594	2	429.768386	857.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37	1	37	36.5	37.5	0								0	0	0	1.7419	1	12522	12522		34.173	0	1		+		44548	20031	29508	29625	45117	45117					0.08775857045611701
TVKDFSHAK	9	Unmodified	_TVKDFSHAK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;ENST00000523206.5_1_8:95850795-95884149:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7762451171875	2	516.777274	1031.53999	0.3141	0.00016232	-0.25129	-0.00012986	0.062811	3.2459E-05	516.7771973432666	15.756	0.074606	15.756	15.705	15.78	0					5	3	2	0	0	0	0.28897	1	3487	3487		51.193	9.7661	1	46116			44549	5745	29509	29626	45118	45118					0.02548572300474916
TVKDFSHAK	9	Unmodified	_TVKDFSHAK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;ENST00000523206.5_1_8:95850795-95884149:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.85394287109375	3	344.853941	1031.53999	0.68345	0.00023569	-1.2396	-0.00042749	-0.55617	-0.0001918	344.85357860508327	16.07	0.13915	16.07	15.979	16.118	0					6	3	2	0	0	0	0.46194	1	4295	4295		51.528	23.646	1	190040			44550	5745	29509	29626	45119	45119					0.02548572300474916
TVKDFSHAK	9	Unmodified	_TVKDFSHAK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;ENST00000523206.5_1_8:95850795-95884149:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.77734375	2	516.777274	1031.53999	0.0399	2.062E-05	0.082571	4.2671E-05	0.12247	6.329E-05	516.7773125911203	16.057	0.18327	16.057	15.966	16.149	0					6	4	2	0	0	0	0.037712	1	4288	4288		101.46	19.219	1	447330			44551	5745	29509	29626	45120	45120					0.02548572300474916
TVKDFSHAK	9	Unmodified	_TVKDFSHAK_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;ENST00000523206.5_1_8:95850795-95884149:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.853759765625	3	344.853941	1031.53999	1.5215	0.00052471	-1.8368	-0.00063341	-0.31523	-0.00010871	344.8532810173457	15.988	0.16673	15.988	15.88	16.047	0					7	3	3	0	0	0	0.13267	1	4351	4351		88.177	51.73	1	260480			44552	5745	29509	29626	45121	45121					0.02548572300474916
TVKEFRQLA	9	Unmodified	_TVKEFRQLA_					0	0	0		nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000480996.1_1_9:6805652-6819052:+|nuORF;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	nc|ENSG00000293552|Q9H3R0-2|KDM4C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.81640625	2	546.314023	1090.61349	1.2089	0.00066046	-1.1282	-0.00061635	0.080732	4.4105E-05	546.3132211742509	30.766	1.0667	30.766	30.646	31.713	0					122	44	5	0	0	0	0.35021	1	10112	10112		45.972	1.5951	1	16827000			44553	2468	29510	29627	45122	45122					0.07181120742961866
TVKERLGK	8	Unmodified	_TVKERLGK_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7897644042969	2	465.790184	929.565815	-0.87277	-0.00040653	0.38126	0.00017759	-0.4915	-0.00022894	465.7903101257795	24.249	0.23195	24.249	24.15	24.382	0					15	7	3	0	0	0	0.48092	1	7389	7389		62.107	5.3864	1	629380	+		44554	14709	29511	29628	45123	45123					0.09821466542746293
TVKERLGK	8	Unmodified	_TVKERLGK_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7899169921875	2	465.790184	929.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.284	1	24.284	23.784	24.784	0								0	0	0	1.7419	1	7549	7549		52.937	3.4007	1		+		44555	14709	29511	29628	45124	45124					0.09821466542746293
TVKEVDLLK	9	Unmodified	_TVKEVDLLK_					0	0	0		MAP4|p.G501D|1|0.04|ENSG00000047849|chr3:47916325-47916325|C/T|missense_variant	MAP4|p.G501D|1|0.04|ENSG00000047849|chr3:47916325-47916325|C/T|missense_variant	MAP4|p.G501D|1|0.04|ENSG00000047849|chr3:47916325-47916325|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.8813781738281	3	348.881497	1043.62266	0.49868	0.00017398	-0.74702	-0.00026062	-0.24833	-8.6639E-05	348.8811387680164	26.801	0.22428	26.801	26.702	26.927	0					9	5	3	0	0	0	0.095583	1	9298	9298		80.455	0.74203	1	566250			44556	11346	29512	29629	45125	45125					0.1025946930860755
TVKKQKDK	8	Unmodified	_TVKKQKDK_					0	0	0			REV__ENSG00000278053|ENST00000617633|DDX52	REV__ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	325.5380859375	3	325.537953	973.59203	-0.66749	-0.00021729	1.1414	0.00037155	0.47386	0.00015426	325.5382925042529	21.568	0.091318	21.568	21.486	21.577	0					6	3	2	0	0	0	0.58597	1	6210	6210		51.335	3.3759	1	122740	+		44557	17838	29513	29630	45126	45126					0.10417735714224818
TVKLLLIW	8	Unmodified	_TVKLLLIW_					0	0	0			REV__nc|ENSG00000181355|Q8IZS5|OFCC1	REV__nc|ENSG00000181355|Q8IZS5|OFCC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	329.2197570800781	3	329.219673	984.637189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.645	1	27.645	27.145	28.145	0								0	0	0	1.7419	1	9071	9071		6.7355	0	1		+		44558	21150	29514	29631	45127	45127					0.14425586247421052
TVKNRGESH	9	Unmodified	_TVKNRGESH_					0	0	0		ENST00000541607.1_1_9:37575600-37576341:-|nuORF	ENST00000541607.1_1_9:37575600-37576341:-|nuORF	ENST00000541607.1_1_9:37575600-37576341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.26904296875	2	514.267604	1026.52066	1.3535	0.00069606	0.75968	0.00039068	2.1132	0.0010867	514.2680632903212	36.246	0.5308	36.246	36.079	36.61	0					31	15	3	0	0	0	0.099922	1	14092	14092		79.451	5.4763	1	1924800			44559	10545	29515	29632	45128	45128					0.008456160095647647
TVKPGAKKDTK	11	Unmodified	_TVKPGAKKDTK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.3555297851562	2	586.853512	1171.69247	1.4277	0.00083785	-0.073583	-4.3183E-05	1.3541	0.00079467	586.8532979972777	11.032	0.06161	11.032	10.986	11.048	0					4	2	2	0	0	0	0.29287	1	2169	2169		63.426	10.338	1	71454			44560	2445	29516	29633	45129	45129					0.11349347977215984
TVKPGAKKDTK	11	Unmodified	_TVKPGAKKDTK_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.856201171875	2	586.853512	1171.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.04	1	11.04	10.54	11.54	0								0	0	0	0.34471	1	2109	2109		45.908	9.4614	1				44561	2445	29516	29633	45130	45130					0.11349347977215984
TVKPPPGAYS	10	Unmodified	_TVKPPPGAYS_					0	0	0			REV__ENST00000415191.6_1_11:73824618-73881837:-|nuORF	REV__ENST00000415191.6_1_11:73824618-73881837:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7742614746094	2	508.7742	1015.53385	0.19422	9.8816E-05	0.3763	0.00019145	0.57052	0.00029027	508.77440852433506	35.654	0.23167	35.654	35.544	35.775	0					10	6	2	0	0	0	0.62235	1	13842	13842		31.53	1.0262	1	71017	+		44562	16230	29517	29634	45131	45131					0.02670054068948957
TVKTFSALQ	9	Unmodified	_TVKTFSALQ_					0	0	0			REV__ENST00000510003.5_1_5:121726829-121776497:+|nuORF	REV__ENST00000510003.5_1_5:121726829-121776497:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.78204345703125	2	497.782025	993.549496	0.70024	0.00034857	0.075389	3.7527E-05	0.77563	0.0003861	497.78187508686847	33.991	0.23433	33.991	33.92	34.154	0					12	6	3	0	0	0	0.18416	1	12640	12640		63.534	3.4156	1	157020	+		44563	13109	29518	29635	45132	45132					0.05246340585983944
TVKTWIKN	8	Unmodified	_TVKTWIKN_					0	0	0			REV__ENST00000338446.8_1_3:138352140-138352185:+|nuORF	REV__ENST00000338446.8_1_3:138352140-138352185:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2667541503906	2	495.292559	988.570566	0.10526	5.2132E-05	0.43219	0.00021406	0.53745	0.00026619	495.292751678427	20.759	0.34919	20.759	20.66	21.009	0					11	8	2	0	0	0	0.66372	1	5868	5868		38.806	0	1	219900	+		44564	18430	29519	29636	45133	45133					0.07582350685515848
TVKVLTQG	8	Unmodified	_TVKVLTQG_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2576599121094	2	423.258185	844.501818	0.98004	0.00041481	-0.19779	-8.3715E-05	0.78226	0.0003311	423.25785239760194	32.557	0.21471	32.557	32.424	32.639	0					6	5	2	0	0	0	0.62915	1	11991	11991		44.377	8.7589	1	61652			44565	1373	29520	29637	45134	45134					0.07334686385809164
TVKVQSFLV	9	Unmodified	_TVKVQSFLV_					0	0	0			REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.8078308105469	2	510.808042	1019.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.141	1	38.141	37.641	38.641	0								0	0	0	0.23445	1	14953	14953		45.972	13.16	1		+		44566	15651	29521	29638	45135	45135					0.09251503999757915
TVKYPNPE	8	Unmodified	_TVKYPNPE_					0	0	0		nc|ENSG00000169299|Q96G03-2|PGM2;ENST00000505986.5_1_4:37841281-37848924:+|nuORF;ENSG00000169299|ENST00000381967|PGM2	nc|ENSG00000169299|Q96G03-2|PGM2	nc|ENSG00000169299|Q96G03-2|PGM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2445983886719	2	474.245275	946.475997	0.69304	0.00032867	-1.4112	-0.00066927	-0.71818	-0.0003406	474.2446651039021	41.804	0.86102	41.804	41.557	42.418	0					39	23	2	0	0	0	0.59773	1	16571	16571		49.442	0	1	110840			44567	6158	29522	29639	45136	45136					0.0006179214351504925
TVLAHNHQL	9	Unmodified	_TVLAHNHQL_					0	0	0			REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	REV__USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.7830810546875	2	516.78289	1031.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.449	1	31.449	30.949	31.949	0								0	0	0	0.30504	1	10423	10423		34.173	2.2177	1		+		44568	14400	29523	29640	45137	45137					0.03671394394609706
TVLENSTSY	9	Unmodified	_TVLENSTSY_					0	0	0		ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant	ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.24298095703125	2	507.242929	1012.47131	0.86633	0.00043944	-0.57023	-0.00028925	0.2961	0.00015019	507.2429137037432	33.504	0.25252	33.504	33.456	33.708	0					12	6	3	0	0	0	0.026656	1	12404	12404		117.81	27.441	1	187010			44569	233	29524	29641	45138	45138					-0.034431367899060206
TVLENSTSY	9	Unmodified	_TVLENSTSY_					0	0	0		ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant	ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.24322509765625	2	507.242929	1012.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.325	1	33.325	32.825	33.825	0								0	0	0	0.17166	1	11684	11684		65.465	21.349	1				44570	233	29524	29641	45139	45139					-0.034431367899060206
TVLENSTSY	9	Unmodified	_TVLENSTSY_					0	0	0		ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant	ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2428283691406	2	507.242929	1012.47131	1.2847	0.00065163	-1.2819	-0.00065026	0.0027155	1.3774E-06	507.2420143044559	33.495	0.31752	33.495	33.382	33.7	0					14	6	3	0	0	0	0.064446	1	12751	12751		93.598	20.718	1	299120			44571	233	29524	29641	45140	45140					-0.034431367899060206
TVLKEIFAK	9	Unmodified	_TVLKEIFAK_					0	0	0		ENSG00000132698|ENST00000361084|RAB25	ENSG00000132698|ENST00000361084|RAB25	ENSG00000132698|ENST00000361084|RAB25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8242797851562	2	524.823692	1047.63283	1.0001	0.00052485	0.075917	3.9843E-05	1.076	0.00056469	524.8237891649394	34.609	0.17329	34.609	34.54	34.713	0					8	4	2	0	0	0	0.11411	1	13356	13356		76.17	23.233	1	143600			44572	3810	29525	29642	45141	45141					0.11092077033845271
TVLKEIFAK	9	Unmodified	_TVLKEIFAK_					0	0	0		ENSG00000132698|ENST00000361084|RAB25	ENSG00000132698|ENST00000361084|RAB25	ENSG00000132698|ENST00000361084|RAB25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8242797851562	2	524.823692	1047.63283	0.54072	0.00028378	0.79078	0.00041502	1.3315	0.00069881	524.8241199070393	34.55	0.25769	34.55	34.443	34.7	0					12	5	3	0	0	0	0.11411	1	13263	13263		76.17	15.198	1	341920			44573	3810	29525	29642	45142	45142					0.11092077033845271
TVLLHYVAQEE	11	Unmodified	_TVLLHYVAQEE_					0	0	0			REV__FAT1|p.R3098T|1|0.26|ENSG00000083857|chr4:186613279-186613279|C/G|missense_variant	REV__FAT1|p.R3098T|1|0.26|ENSG00000083857|chr4:186613279-186613279|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.5618591308594	3	434.562715	1300.66632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.368	1	30.368	29.868	30.868	0								0	0	0	0.43372	1	10942	10942		29.551	3.4874	1		+		44574	20664	29526	29643	45143	45143					0.02801034015078585
TVLPFEAMPR	10	Unmodified	_TVLPFEAMPR_					0	0	0		CYP11B1|p.Q426Sfs*4|1|0.26|ENSG00000160882|chr8:142875079-142875079|G/-|frameshift_variant;nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000160882|ENST00000292427|CYP11B1	CYP11B1|p.Q426Sfs*4|1|0.26|ENSG00000160882|chr8:142875079-142875079|G/-|frameshift_variant	CYP11B1|p.Q426Sfs*4|1|0.26|ENSG00000160882|chr8:142875079-142875079|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	387.54412841796875	3	387.542598	1159.60597	3.5035	0.0013578	0.10154	3.935E-05	3.605	0.0013971	387.5426143165676	18.394	0.20004	18.394	18.314	18.514	0					20	7	4	0	0	0	0.56063	1	4781	4781		38.754	2.3069	1	850090			44575	727	29527	29644	45144	45144					0.032546451510143015
TVLQNSVV	8	Unmodified	_TVLQNSVV_					0	0	0			REV__ENST00000506915.1_1_4:190395906-190396341:+|nuORF	REV__ENST00000506915.1_1_4:190395906-190396341:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2480773925781	2	430.247818	858.481082	-0.50537	-0.00021743	0.68285	0.0002938	0.17749	7.6364E-05	430.2480629080262	25.611	0.21514	25.611	25.506	25.721	0					7	4	2	0	0	0	0.58597	1	9122	9122		51.335	0.14276	1	214780	+		44576	19841	29528	29645	45145	45145					0.04618096006151973
TVLQSHML	8	Unmodified	_TVLQSHML_					0	0	0		ENST00000496521.2_1_9:18795428-18796577:+|nuORF	ENST00000496521.2_1_9:18795428-18796577:+|nuORF	ENST00000496521.2_1_9:18795428-18796577:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7494201660156	2	464.74967	927.484787	0.54088	0.00025138	-1.1306	-0.00052546	-0.58975	-0.00027409	464.7491745820911	23.653	0.28108	23.653	23.565	23.846	0					14	6	3	0	0	0	0.24105	1	7870	7870		115.46	0	1	2363700			44577	10119	29529	29646	45146	45146					0.018144425083505666
TVLQYVVGR	9	Unmodified	_TVLQYVVGR_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.S1260N|1|0.36|ENSG00000155561|chr7:135618419-135618419|G/A|missense_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.8051147460938	2	517.803291	1033.59203	1.3118	0.00067926	-0.060484	-3.1319E-05	1.2513	0.00064794	517.8031968018903	39.773	0.26963	39.773	39.702	39.972	0					19	10	3	0	0	0	0.035062	1	15145	15145		104.06	39.85	1	232430			44578	5131	29530	29647	45147	45147					0.07657735714224145
TVLQYVVGR	9	Unmodified	_TVLQYVVGR_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.S1260N|1|0.36|ENSG00000155561|chr7:135618419-135618419|G/A|missense_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.8049926757812	2	517.803291	1033.59203	1.0113	0.00052364	-0.052917	-2.7401E-05	0.95835	0.00049624	517.8032711525547	39.744	0.16443	39.744	39.679	39.844	0					8	5	2	0	0	0	0.032383	1	15637	15637		106.68	42.476	1	123330			44579	5131	29530	29647	45148	45148					0.07657735714224145
TVLQYVVGR	9	Unmodified	_TVLQYVVGR_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.S1260N|1|0.36|ENSG00000155561|chr7:135618419-135618419|G/A|missense_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.8038330078125	2	517.803291	1033.59203	1.5416	0.00079822	-1.5193	-0.00078668	0.022298	1.1546E-05	517.8024431909859	39.766	0.21281	39.766	39.65	39.863	0					10	7	2	0	0	0	0.24095	1	15646	15646		56.721	9.0637	1	103030			44580	5131	29530	29647	45149	45149					0.07657735714224145
TVLQYVVGR	9	Unmodified	_TVLQYVVGR_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.S1260N|1|0.36|ENSG00000155561|chr7:135618419-135618419|G/A|missense_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.8038330078125	2	517.803291	1033.59203	0.23671	0.00012257	-0.35581	-0.00018424	-0.1191	-6.1673E-05	517.8029898050664	39.709	0.37415	39.709	39.613	39.987	0					15	8	3	0	0	0	0.011389	1	15702	15702		138.06	65.183	1	430480			44581	5131	29530	29647	45150	45150					0.07657735714224145
TVLQYVVGR	9	Unmodified	_TVLQYVVGR_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.S1260N|1|0.36|ENSG00000155561|chr7:135618419-135618419|G/A|missense_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.8037719726562	2	517.803291	1033.59203	1.564	0.00080986	-1.3926	-0.00072109	0.17143	8.8767E-05	517.8027349552556	39.692	0.28069	39.692	39.602	39.883	0					12	6	2	0	0	0	0.026538	1	15714	15714		112.41	38.156	1	568570			44582	5131	29530	29647	45151	45151					0.07657735714224145
TVLRPSLGK	9	Unmodified	_TVLRPSLGK_					0	0	0		WEE2|p.K506*|1|0.1|ENSG00000214102|chr7:141727426-141727427|-/TG|frameshift_variant;ENSG00000214102|ENST00000397541|WEE2	WEE2|p.K506*|1|0.1|ENSG00000214102|chr7:141727426-141727427|-/TG|frameshift_variant	WEE2|p.K506*|1|0.1|ENSG00000214102|chr7:141727426-141727427|-/TG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.80584716796875	2	485.805834	969.597115	-0.24635	-0.00011968	-0.25579	-0.00012427	-0.50214	-0.00024394	485.8058722610686	24.266	0.14004	24.266	24.172	24.312	0					6	3	2	0	0	0	0.10915	1	7535	7535		77.318	11.514	1	85871			44583	7807	29531	29648	45152	45152					0.11110039576851705
TVLSDNRVL	9	Unmodified	_TVLSDNRVL_					0	0	0			REV__ENSG00000168958|ENST00000304593|MFF	REV__ENSG00000168958|ENST00000304593|MFF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.53759765625	3	339.529346	1015.56621	-1.9323	-0.00065606	0.79843	0.00027109	-1.1338	-0.00038497	339.52963586342355	22.731	0.18952	22.731	22.635	22.825	0					7	4	2	0	0	0	0.4966	1	6793	6793		32.812	0.061884	1	58519	+		44584	16286	29532	29649	45153	45153					0.059048414719427456
TVLSKRKLT	9	Unmodified	_TVLSKRKLT_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.2289123535156	3	349.229119	1044.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.354	1	22.354	21.854	22.854	0								0	0	0	0.36609	1	7555	7555		20.947	0.10978	1				44585	4092	29533	29650	45154	45154					0.14498284156707086
TVLSKRKLT	9	Unmodified	_TVLSKRKLT_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.22906494140625	3	349.229119	1044.66553	-0.042385	-1.4802E-05	1.4431	0.00050398	1.4007	0.00048918	349.2298631703886	22.295	0.31551	22.295	22.037	22.353	0					11	6	2	0	0	0	0.51991	1	7406	7406		30.318	6.795	1	551640			44586	4092	29533	29650	45155	45155					0.14498284156707086
TVLSSWIAK	9	Unmodified	_TVLSSWIAK_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7925720214844	2	502.792392	1003.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.094	1	42.094	41.594	42.594	0								0	0	0	0.14881	1	16779	16779		60.118	0	1				44587	1663	29534	29651	45156	45156					0.06858930965665877
TVLTITSTSPS	11	Unmodified	_TVLTITSTSPS_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.5364074707031	3	369.536166	1105.58667	-0.11313	-4.1807E-05	1.008	0.00037249	0.89487	0.00033069	369.5365792052621	27.018	0.12801	27.018	26.936	27.064	0					5	3	2	0	0	0	0.7098	1	8795	8795		23.378	8.0448	1	94140	+		44588	13584	29535	29652	45157	45157					0.038099673410897594
TVLVLPKLG	9	Unmodified	_TVLVLPKLG_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.3155212402344	2	470.315503	938.616454	0.60844	0.00028616	-0.83367	-0.00039209	-0.22523	-0.00010593	470.3150123890697	42.191	0.15652	42.191	42.132	42.289	0					10	7	2	0	0	0	0.53083	1	16572	16572		29.15	0	1	115780	+		44589	12339	29536	29653	45158	45158					0.14468995867741796
TVLVSTLLAT	10	Unmodified	_TVLVSTLLAT_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.31292724609375	2	509.313158	1016.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.59	1	47.59	47.09	48.09	0								0	0	0	0.41253	1	15914	15914		26.693	1.2427	1		+		44590	16839	29537	29654	45159	45159					0.1041206693435015
TVLWGQNAA	9	Unmodified	_TVLWGQNAA_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2524719238281	2	480.250892	958.48723	0.050835	2.4413E-05	4.1825	0.0020087	4.2333	0.0020331	480.2526497562507	26.97	0.12522	26.97	26.878	27.003	0					6	3	2	0	0	0	0.53083	1	8764	8764		29.15	1.2673	1	35664	+		44591	13995	29538	29655	45160	45160					0.006326142376565258
TVMCRIRL	8	Unmodified	_TVMCRIRL_					0	0	0			REV__ENST00000265729.6_1_7:87848181-87849322:-|nuORF	REV__ENST00000265729.6_1_7:87848181-87849322:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2943115234375	2	496.280615	990.546676	0.96173	0.00047729	1.1716	0.00058142	2.1333	0.0010587	496.2816539111793	36.124	0.21681	36.124	36.064	36.281	0					8	4	2	0	0	0	0.58597	1	13999	13999		51.335	3.6781	1	444040	+		44592	18078	29539	29656	45161	45161					0.05102470655822344
TVMDKTRAL	9	Oxidation (M)	_TVM(Oxidation (M))DKTRAL_		TVM(1)DKTRAL		TVM(62)DKTRAL	0	0	1		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7843627929688	2	525.784241	1049.55393	1.3672	0.00071887	-0.46644	-0.00024525	0.90079	0.00047362	525.7839037092355	19.147	0.20631	19.147	19.061	19.268	0					11	6	2	0	0	0	0.19952	1	4886	4886		61.691	19.295	1	137320			44593	373	29540	29657	45162	45162		19			0.031134817372503676
TVMDKTRAL	9	Oxidation (M)	_TVM(Oxidation (M))DKTRAL_		TVM(1)DKTRAL		TVM(78)DKTRAL	0	0	1		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.7844848632812	2	525.784241	1049.55393	1.9567	0.0010288	-1.2776	-0.00067175	0.67904	0.00035703	525.7835313993016	19.342	0.58817	19.342	19.169	19.757	0					26	13	4	0	0	0	0.10506	1	5877	5877		78.264	26.928	1	1176400			44594	373	29540	29657	45163	45163		19			0.031134817372503676
TVMDKTRAL	9	Oxidation (M)	_TVM(Oxidation (M))DKTRAL_		TVM(1)DKTRAL		TVM(73)DKTRAL	0	0	1		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7844848632812	2	525.784241	1049.55393	1.1839	0.00062245	-0.1929	-0.00010142	0.99096	0.00052103	525.7841534945769	19.239	0.26903	19.239	19.151	19.42	0					9	6	2	0	0	0	0.12834	1	5176	5176		72.879	9.3454	1	167930			44595	373	29540	29657	45164	45164		19			0.031134817372503676
TVMDKTRAL	9	Oxidation (M)	_TVM(Oxidation (M))DKTRAL_		TVM(1)DKTRAL		TVM(83)DKTRAL	0	0	1		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7850341796875	2	525.784241	1049.55393	0.58185	0.00030593	0.76923	0.00040445	1.3511	0.00071038	525.7845015114697	19.352	0.6108	19.352	19.096	19.706	0					18	12	2	0	0	0	0.085655	1	5976	5976		82.75	18.543	1	1245900			44596	373	29540	29657	45165	45165		19			0.031134817372503676
TVMDKTRAL	9	Oxidation (M)	_TVM(Oxidation (M))DKTRAL_		TVM(1)DKTRAL		TVM(99)DKTRAL	0	0	1		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7847290039062	2	525.784241	1049.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.36	1	19.36	18.86	19.86	0								0	0	0	0.023427	1	5969	5969		99.013	23.97	1				44597	373	29540	29657	45166	45166		19			0.031134817372503676
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7868041992188	2	517.786784	1033.55902	1.3831	0.00071616	-1.3475	-0.00069774	0.035586	1.8426E-05	517.7861387787707	24.312	0.2682	24.312	24.215	24.483	0					23	8	4	0	0	0	0.082776	1	7151	7151		83.647	16.153	1	3282300			44598	373	29540	29658	45167	45167					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.78662109375	2	517.786784	1033.55902	0.41514	0.00021495	-0.043633	-2.2593E-05	0.3715	0.00019236	517.7868600159253	24.309	0.23375	24.309	24.24	24.474	0					15	7	3	0	0	0	0.10915	1	7145	7145		77.318	17.199	1	557940			44599	373	29540	29658	45168	45168					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7869262695312	2	517.786784	1033.55902	1.317	0.00068192	-0.97358	-0.00050411	0.3434	0.00017781	517.7864225896265	24.576	0.66576	24.576	24.45	25.115	0					39	16	6	0	0	0	0.035106	1	8283	8283		104.01	24.301	1	18585000			44600	373	29540	29658	45169	45169					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7867431640625	2	517.786784	1033.55902	0.049021	2.5383E-05	-0.36811	-0.0001906	-0.31909	-0.00016522	517.7867781636097	24.57	0.30832	24.57	24.478	24.786	0					22	7	5	0	0	0	0.014413	1	8292	8292		131.62	30.015	1	3515100			44601	373	29540	29658	45170	45170					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7872314453125	2	517.786784	1033.55902	0.074395	3.8521E-05	0.23373	0.00012102	0.30812	0.00015954	517.7869498593559	24.348	0.49944	24.348	24.213	24.712	0					43	16	5	0	0	0	0.056004	1	7417	7417		93.143	23.516	1	8426100			44602	373	29540	29658	45171	45171					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7870483398438	2	517.786784	1033.55902	1.5482	0.00080164	-1.3234	-0.00068522	0.22485	0.00011642	517.7865930302224	24.554	0.90964	24.554	24.196	25.106	0					45	18	6	0	0	0	0.021015	1	8594	8594		120.31	60.188	1	47696000			44603	373	29540	29658	45172	45172					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7871704101562	2	517.786784	1033.55902	0.91753	0.00047508	-0.56181	-0.0002909	0.35572	0.00018419	517.7865197222915	24.392	0.35849	24.392	24.301	24.66	0					21	8	4	0	0	0	0.02429	1	7586	7586		114.89	45.267	1	4821700			44604	373	29540	29658	45173	45173					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7868041992188	2	517.786784	1033.55902	-1.4331	-0.00074202	1.4519	0.00075177	0.018828	9.7488E-06	517.7875982856071	24.381	0.52357	24.381	24.29	24.814	0					25	12	4	0	0	0	0.037924	1	7579	7579		101.25	34.823	1	5524600			44605	373	29540	29658	45174	45174					0.043577855998591986
TVMDKTRAL	9	Unmodified	_TVMDKTRAL_					0	0	0		CARD17-CASP1|1|fusion;ENSG00000137752|ENST00000533400|CASP1;CARD17-CASP1|2|fusion;nc|ENSG00000137752|P29466-2|CASP1;CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant;nc|ENSG00000204397|Q5EG05|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000527065.1_1_11:104915107-104915377:-|nuORF	CARD17-CASP1|1|fusion	CARD17-CASP1|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7869873046875	2	517.786784	1033.55902	1.5661	0.00081092	-1.9844	-0.0010275	-0.41832	-0.0002166	517.7859863226176	24.521	0.90134	24.521	24.414	25.315	0					39	18	4	0	0	0	0.021015	1	8457	8457		120.31	72.346	1	43848000			44606	373	29540	29658	45175	45175					0.043577855998591986
TVMGQLLVK	9	Unmodified	_TVMGQLLVK_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1;ENST00000477983.1_1_7:156526850-156555826:-|nuORF;ENST00000434503.5_1_7:156480878-156685794:-|nuORF	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7962341308594	2	494.79662	987.578688	-0.64331	-0.00031831	0.43614	0.0002158	-0.20718	-0.00010251	494.7968378416941	38.226	0.20768	38.226	38.127	38.334	0					7	4	2	0	0	0	0.17854	1	15002	15002		64.207	14.766	1	105490			44607	2412	29541	29659	45176	45176					0.08440161610621999
TVMNGALVK	9	Unmodified	_TVMNGALVK_					0	0	0		SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant;ENSG00000131389|ENST00000622186|SLC6A6	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.76483154296875	2	466.76532	931.516088	0.81707	0.00038138	-1.3369	-0.00062402	-0.51984	-0.00024264	466.7645075556441	27.602	0.12581	27.602	27.545	27.67	0					7	4	2	0	0	0	0.47038	1	8531	8531		35.618	2.1027	1	55774			44608	3718	29542	29660	45177	45177					0.04759015542447287
TVMNGALVK	9	Unmodified	_TVMNGALVK_					0	0	0		SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant;ENSG00000131389|ENST00000622186|SLC6A6	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7652893066406	2	466.76532	931.516088	0.26071	0.00012169	-1.1038	-0.00051523	-0.84312	-0.00039354	466.76489344409123	27.904	0.18802	27.904	27.805	27.993	0					10	4	3	0	0	0	0.055856	1	9789	9789		93.195	13.744	1	410570			44609	3718	29542	29660	45178	45178					0.04759015542447287
TVMNGALVK	9	Unmodified	_TVMNGALVK_					0	0	0		SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant;ENSG00000131389|ENST00000622186|SLC6A6	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.76483154296875	2	466.76532	931.516088	-0.13337	-6.2251E-05	-0.80041	-0.0003736	-0.93378	-0.00043585	466.7650391003342	27.872	0.26483	27.872	27.764	28.029	0					13	5	3	0	0	0	0.02953	1	10134	10134		109.48	30.027	1	997210			44610	3718	29542	29660	45179	45179					0.04759015542447287
TVMNGALVK	9	Unmodified	_TVMNGALVK_					0	0	0		SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant;ENSG00000131389|ENST00000622186|SLC6A6	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7657775878906	2	466.76532	931.516088	-0.18584	-8.6745E-05	0.73661	0.00034382	0.55076	0.00025708	466.76560159448303	27.68	0.18522	27.68	27.588	27.773	0					7	4	2	0	0	0	0.2873	1	9078	9078		51.335	5.3835	1	117540			44611	3718	29542	29660	45180	45180					0.04759015542447287
TVMNGALVK	9	Unmodified	_TVMNGALVK_					0	0	0		SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant;ENSG00000131389|ENST00000622186|SLC6A6	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	SLC6A6|p.R601H|1|0.36|ENSG00000131389|chr3:14484946-14484946|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.76519775390625	2	466.76532	931.516088	-0.50289	-0.00023473	-0.4541	-0.00021196	-0.95698	-0.00044669	466.76523567240105	27.821	0.31393	27.821	27.712	28.026	0					15	6	4	0	0	0	0.10915	1	9992	9992		77.318	15.21	1	1348100			44612	3718	29542	29660	45181	45181					0.04759015542447287
TVMNIAEHY	9	Unmodified	_TVMNIAEHY_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.256591796875	2	539.255317	1076.49608	1.5454	0.00083337	-0.16639	-8.9729E-05	1.379	0.00074364	539.2556485053166	35.725	0.093529	35.725	35.675	35.769	0					7	4	2	0	0	0	0.22837	1	11714	11714		58.23	8.6939	1	62654			44613	2427	29543	29661	45182	45182					-0.03910780188175522
TVMNIAEHY	9	Unmodified	_TVMNIAEHY_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2557983398438	2	539.255317	1076.49608	1.9913	0.0010738	-1.8058	-0.00097378	0.1855	0.00010003	539.2546206509426	35.983	0.24163	35.983	35.903	36.144	0					15	6	3	0	0	0	0.056004	1	13547	13547		93.143	21.266	1	372180			44614	2427	29543	29661	45183	45183					-0.03910780188175522
TVMNIAEHY	9	Unmodified	_TVMNIAEHY_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2554931640625	2	539.255317	1076.49608	0.68522	0.00036951	0.071668	3.8647E-05	0.75689	0.00040816	539.2551427769022	35.89	0.2656	35.89	35.833	36.098	0					10	5	3	0	0	0	0.098791	1	13931	13931		79.713	30.271	1	291730			44615	2427	29543	29661	45184	45184					-0.03910780188175522
TVMNIAEHY	9	Unmodified	_TVMNIAEHY_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.2555541992188	2	539.255317	1076.49608	2.0663	0.0011143	-1.7266	-0.00093108	0.33975	0.00018321	539.2545536626303	35.923	0.3137	35.923	35.768	36.081	0					14	6	3	0	0	0	0.048471	1	13924	13924		95.815	34.843	1	1001800			44616	2427	29543	29661	45185	45185					-0.03910780188175522
TVMPLELPQ	9	Unmodified	_TVMPLELPQ_					0	0	0			REV__ENST00000246911.6_1_17:41158964-41165399:+|nuORF	REV__ENST00000246911.6_1_17:41158964-41165399:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2805786132812	2	514.27826	1026.54197	1.0241	0.00052666	3.1591	0.0016247	4.1832	0.0021513	514.280150827493	19.001	0.19411	19.001	18.899	19.093	0					7	4	2	0	0	0	0.2873	1	5062	5062		51.335	1.7994	1	175120	+		44617	13143	29544	29662	45186	45186					0.029758649940504256
TVMTQSTAK	9	Unmodified	_TVMTQSTAK_					0	0	0		ENSG00000139793|ENST00000679496|MBNL2	ENSG00000139793|ENST00000679496|MBNL2	ENSG00000139793|ENST00000679496|MBNL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.74981689453125	2	483.749867	965.485181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.035	1	17.035	16.535	17.535	0								0	0	0	0.33029	1	4164	4164		29.17	2.4771	1				44618	4353	29545	29663	45187	45187					0.0010581743754300987
TVMTQSTAK	9	Unmodified	_TVMTQSTAK_					0	0	0		ENSG00000139793|ENST00000679496|MBNL2	ENSG00000139793|ENST00000679496|MBNL2	ENSG00000139793|ENST00000679496|MBNL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7498474121094	2	483.749867	965.485181	-0.59298	-0.00028686	0.58197	0.00028153	-0.011009	-5.3256E-06	483.75014618853925	17.201	0.2198	17.201	17.09	17.31	0					6	4	2	0	0	0	0.34452	1	4929	4929		46.457	5.6786	1	349910			44619	4353	29545	29663	45188	45188					0.0010581743754300987
TVMVVVFNK	9	Oxidation (M)	_TVM(Oxidation (M))VVVFNK_		TVM(1)VVVFNK		TVM(66)VVVFNK	0	0	1			REV__ENST00000588329.5_1_19:13056723-13059660:+|nuORF	REV__ENST00000588329.5_1_19:13056723-13059660:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7970581054688	2	526.794078	1051.5736	3.4662	0.001826	1.3897	0.00073208	4.8558	0.002558	526.7949138080223	31.394	0.26283	31.394	31.292	31.554	0					12	5	3	0	0	0	0.16002	1	11745	11745		66.429	15.094	1	878730	+		44620	14239	29546	29664	45189	45189		543			0.049878577480058084
TVNFLTGQL	9	Unmodified	_TVNFLTGQL_					0	0	0		ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7736511230469	2	496.7742	991.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.227	1	25.227	24.727	25.727	0								0	0	0	0.35377	1	7566	7566		24.519	0	1				44621	7180	29547	29665	45190	45190					0.037740540689469526
TVNGDFCGKY	10	Carbamidomethyl (C)	_TVNGDFC(Carbamidomethyl (C))GKY_	TVNGDFC(1)GKY		TVNGDFC(53)GKY		0	1	0			REV__ENSG00000124466|ENST00000244333|LYPD3	REV__ENSG00000124466|ENST00000244333|LYPD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.7576293945312	2	580.755681	1159.49681	3.2439	0.0018839	-1.066	-0.00061906	2.178	0.0012649	580.7552815032425	29.625	1.3977	29.625	29.515	30.913	0					70	28	3	0	0	0	0.43008	1	10932	10932		52.937	10.541	1	19169000	+		44622	14399	29548	29666	45191	45191	536				-0.07655985539122412
TVNKGDTAVL	10	Unmodified	_TVNKGDTAVL_					0	0	0		nc|ENSG00000066056|P35590-3|TIE1;TIE1|p.P248Lfs*117|2|0.42|ENSG00000066056|chr1:43307239-43307239|C/-|frameshift_variant;nc|ENSG00000066056|P35590-2|TIE1;TIE1|p.R648Dfs*15|1|0.25|ENSG00000066056|chr1:43313144-43313144|C/-|frameshift_variant;TIE1|p.F1100Lfs*8|1|0.5|ENSG00000066056|chr1:43321662-43321662|C/-|frameshift_variant;ENSG00000066056|ENST00000372476|TIE1	nc|ENSG00000066056|P35590-3|TIE1	nc|ENSG00000066056|P35590-3|TIE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28240966796875	2	509.282389	1016.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.59	1	34.59	34.09	35.09	0								0	0	0	0.40797	1	12898	12898		28.081	0	1				44623	1385	29549	29667	45192	45192					0.04261135235049096
TVNLIIMISP	10	Unmodified	_TVNLIIMISP_					0	0	0			REV__tr|U7T220|U7T220_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00437PE=4SV=1	REV__tr|U7T220|U7T220_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00437PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8204956054688	2	550.822835	1099.63112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.66	1	39.66	39.16	40.16	0								0	0	0	0.38475	1	15605	15605		35.152	3.1972	1		+		44624	22088	29550	29668	45193	45193					0.08528699953581054
TVNNIIQVK	9	Unmodified	_TVNNIIQVK_					0	0	0		ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.80908203125	2	514.808574	1027.60259	0.1243	6.399E-05	0.96858	0.00049863	1.0929	0.00056262	514.8090371146964	30.497	0.12159	30.497	30.471	30.592	0					5	4	2	0	0	0	0.15558	1	9732	9732		69.628	21.97	1	39914			44625	2691	29551	29669	45194	45194					0.0898971836866167
TVNNVRLEQ	9	Unmodified	_TVNNVRLEQ_					0	0	0			REV__ENST00000523028.5_1_16:21912870-21927266:-|nuORF;REV__SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	REV__SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7913208007812	2	536.790912	1071.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.69	1	18.69	18.19	19.19	0								0	0	0	0.20989	1	4927	4927		49.536	3.5638	1		+		44626	15648;19967	29552	29670	45195	45195					0.034350558408505094
TVNPKESILK	10	Unmodified	_TVNPKESILK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.8356323242188	2	564.834788	1127.65502	1.5996	0.00090354	-1.0068	-0.00056865	0.59289	0.00033489	564.8341586942352	24.333	0.24389	24.333	24.144	24.388	0					12	5	3	0	0	0	0.11826	1	8126	8126		92.239	28.705	1	476390			44627	4346	29553	29671	45196	45196					0.0963025671160267
TVNPKESILK	10	Unmodified	_TVNPKESILK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.8923034667969	3	376.892284	1127.65502	0.25811	9.7279E-05	-0.38884	-0.00014655	-0.13073	-4.9271E-05	376.8921038216959	24.326	0.54346	24.326	23.989	24.533	0					30	12	4	0	0	0	0.30252	1	8147	8147		97.597	42.513	1	1711600			44628	4346	29553	29671	45197	45197					0.0963025671160267
TVNPKESILK	10	Unmodified	_TVNPKESILK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.834716796875	2	564.834788	1127.65502	0.74956	0.00042338	-0.071697	-4.0497E-05	0.67787	0.00038288	564.8345904438969	24.27	0.36522	24.27	24.062	24.427	0					20	7	4	0	0	0	0.034592	1	8437	8437		114.86	13.398	1	1507000			44629	4346	29553	29671	45198	45198					0.0963025671160267
TVNPKESILK	10	Unmodified	_TVNPKESILK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.8349609375	2	564.834788	1127.65502	0.84033	0.00047465	-0.34982	-0.00019759	0.49051	0.00027706	564.8345845544883	24.237	0.31863	24.237	24.028	24.347	0					17	6	4	0	0	0	0.080628	1	8298	8298		99.013	20.749	1	939610			44630	4346	29553	29671	45199	45199					0.0963025671160267
TVNPQFVQK	9	Unmodified	_TVNPQFVQK_					0	0	0		ENST00000486032.1_1_17:17150414-17150880:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486032.1_1_17:17150414-17150880:-|nuORF	ENST00000486032.1_1_17:17150414-17150880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.792724609375	2	530.792924	1059.57129	1.9019	0.0010095	-1.6914	-0.00089779	0.21046	0.00011171	530.7920810418327	25.365	0.19161	25.365	25.222	25.414	0					7	4	2	0	0	0	0.30841	1	8042	8042		49.536	3.0793	1	163170			44631	4423	29554	29672	45200	45200					0.04389145334562272
TVNPQFVQK	9	Unmodified	_TVNPQFVQK_					0	0	0		ENST00000486032.1_1_17:17150414-17150880:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486032.1_1_17:17150414-17150880:-|nuORF	ENST00000486032.1_1_17:17150414-17150880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.793701171875	2	530.792924	1059.57129	1.1907	0.000632	-0.56454	-0.00029965	0.62613	0.00033235	530.7926822098018	25.348	0.31381	25.348	25.21	25.524	0					18	7	3	0	0	0	0.15163	1	8033	8033		67.494	67.494	1	988610			44632	4423	29554	29672	45201	45201					0.04389145334562272
TVNPQFVQK	9	Unmodified	_TVNPQFVQK_					0	0	0		ENST00000486032.1_1_17:17150414-17150880:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486032.1_1_17:17150414-17150880:-|nuORF	ENST00000486032.1_1_17:17150414-17150880:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7930297851562	2	530.792924	1059.57129	0.7265	0.00038562	-0.45714	-0.00024265	0.26936	0.00014298	530.7927383676532	25.472	0.46481	25.472	25.315	25.78	0					18	8	3	0	0	0	0.056004	1	8908	8908		93.143	13.431	1	1822200			44633	4423	29554	29672	45202	45202					0.04389145334562272
TVNPVAIHK	9	Unmodified	_TVNPVAIHK_					0	0	0		ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.78936767578125	2	489.790184	977.565815	-0.040953	-2.0058E-05	0.0071796	3.5165E-06	-0.033773	-1.6542E-05	489.78990613919376	21.436	0.16525	21.436	21.341	21.506	0					13	6	3	0	0	0	0.36135	1	5901	5901		37.812	3.639	1	155610			44634	1520	29555	29673	45203	45203					0.07613466542738934
TVNPVAIHK	9	Unmodified	_TVNPVAIHK_					0	0	0		ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.78997802734375	2	489.790184	977.565815	-0.45074	-0.00022077	-1.4529	-0.00071161	-1.9036	-0.00093238	489.7891827064488	21.775	0.34901	21.775	21.641	21.99	0					14	8	2	0	0	0	0.040209	1	6961	6961		93.143	24.356	1	929290			44635	1520	29555	29673	45204	45204					0.07613466542738934
TVNPVAIHK	9	Unmodified	_TVNPVAIHK_					0	0	0		ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	326.86260986328125	3	326.862548	977.565815	-0.66751	-0.00021818	0.72449	0.00023681	0.056986	1.8627E-05	326.8626815646157	21.498	0.13372	21.498	21.386	21.52	0					7	4	2	0	0	0	0.38666	1	6175	6175		42.864	2.8061	1	61315			44636	1520	29555	29673	45205	45205					0.07613466542738934
TVNPVAIHK	9	Unmodified	_TVNPVAIHK_					0	0	0		ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	326.8624572753906	3	326.862548	977.565815	1.5153	0.00049531	-1.3848	-0.00045263	0.13055	4.2673E-05	326.86212771356537	21.666	0.21753	21.666	21.558	21.776	0					12	4	4	0	0	0	0.16806	1	7232	7232		65.465	3.358	1	537780			44637	1520	29555	29673	45206	45206					0.07613466542738934
TVNQNTVSL	9	Unmodified	_TVNQNTVSL_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2584228515625	2	488.258914	974.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.678	1	24.678	24.178	25.178	0								0	0	0	0.22075	1	7732	7732		47.96	0.30219	1		+		44638	15666	29556	29674	45207	45207					0.015002756838953246
TVNQSLLSPL	10	Unmodified	_TVNQSLLSPL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF;ENST00000472924.1_1_3:160285772-160286174:+|nuORF;KRT8|p.V77G|1|0.28|ENSG00000170421|chr12:52904752-52904752|A/C|missense_variant;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.3068237304688	2	536.305864	1070.59717	1.9206	0.00103	-0.71095	-0.00038129	1.2097	0.00064875	536.305494019473	49.461	0.4558	49.461	49.31	49.766	0					29	21	2	0	0	0	0.17315	1	19545	19545		82.75	10.873	1	83644		+	44639	11643;10716	29557	29675	45208	45208					0.06469994786198185
TVNSGENVTV	10	Unmodified	_TVNSGENVTV_					0	0	0			REV__ENSG00000185565|ENST00000490035|LSAMP	REV__ENSG00000185565|ENST00000490035|LSAMP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.5048522949219	3	340.504978	1018.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.237	1	23.237	22.737	23.737	0								0	0	0	0.4146	1	6693	6693		26.063	0.61321	1		+		44640	17035	29558	29676	45209	45209					-0.01540332041338388
TVNSPAIYK	9	Unmodified	_TVNSPAIYK_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.77410888671875	2	496.7742	991.533846	0.71645	0.00035591	-1.0729	-0.00053301	-0.35649	-0.00017709	496.7737526233098	25.475	0.40021	25.475	25.195	25.595	0					29	9	4	0	0	0	0.15558	1	8693	8693		66.962	8.18	1	902180			44641	6965	29559	29677	45210	45210					0.037740540689469526
TVNSPAIYK	9	Unmodified	_TVNSPAIYK_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7742614746094	2	496.7742	991.533846	-0.031231	-1.5515E-05	1.5172	0.00075369	1.4859	0.00073817	496.7752928224173	25.481	0.51346	25.481	25.106	25.62	0					29	10	4	0	0	0	0.12834	1	9004	9004		72.879	6.45	1	880090			44642	6965	29559	29677	45211	45211					0.037740540689469526
TVNSPAIYK	9	Unmodified	_TVNSPAIYK_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7745056152344	2	496.7742	991.533846	-0.062075	-3.0837E-05	-0.15053	-7.4777E-05	-0.2126	-0.00010561	496.77400962	25.318	0.31563	25.318	25.098	25.414	0					12	7	2	0	0	0	0.1424	1	8001	8001		69.628	8.6557	1	169000			44643	6965	29559	29677	45212	45212					0.037740540689469526
TVNSPAIYK	9	Unmodified	_TVNSPAIYK_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7741394042969	2	496.7742	991.533846	-0.69544	-0.00034548	0.75652	0.00037582	0.061084	3.0345E-05	496.7747385198481	25.423	0.8549	25.423	25.06	25.915	0					33	15	4	0	0	0	0.11898	1	8838	8838		75.043	11.737	1	1230800			44644	6965	29559	29677	45213	45213					0.037740540689469526
TVNSSFCVDVF	11	Unmodified	_TVNSSFCVDVF_					0	0	0			REV__OR5M3|p.W70C|1|0.31|ENSG00000174937|chr11:56470288-56470288|C/G|missense_variant	REV__OR5M3|p.W70C|1|0.31|ENSG00000174937|chr11:56470288-56470288|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.2811889648438	2	609.278989	1216.54342	-0.6722	-0.00040956	4.3402	0.0026444	3.668	0.0022349	609.2817753545021	13.003	0.22732	13.003	12.889	13.117	0					10	6	3	0	0	0	0.60656	1	2868	2868		36.447	3.6962	1	1063300	+		44645	21322	29560	29678	45214	45214					-0.05618545707852718
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.76617431640625	2	459.766374	917.518196	0.079081	3.6359E-05	-0.64758	-0.00029774	-0.5685	-0.00026138	459.76617017263993	23.938	0.25695	23.938	23.849	24.106	0					19	8	3	0	0	0	0.10821	1	6982	6982		77.533	26.341	1	526860			44646	411;11664	29561	29679	45215	45215					0.05613767551915316
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.76605224609375	2	459.766374	917.518196	0.81408	0.00037429	-1.2813	-0.00058908	-0.46717	-0.00021479	459.76576189882303	24.227	0.3308	24.227	24.131	24.462	0					20	7	4	0	0	0	0.085309	1	8137	8137		82.831	10.953	1	4789600			44647	411;11664	29561	29679	45216	45216					0.05613767551915316
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.765869140625	2	459.766374	917.518196	4.2616	0.0019593	-3.1549	-0.0014505	1.1067	0.00050881	459.7650661102793	23.971	0.31037	23.971	23.86	24.17	0					20	10	3	0	0	0	0.099758	1	7256	7256		79.489	21.259	1	495690			44648	411;11664	29561	29679	45217	45217					0.05613767551915316
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.7660827636719	2	459.766374	917.518196	-0.15466	-7.1108E-05	1.921	0.00088322	1.7664	0.00081211	459.767391471824	24.172	0.51466	24.172	24.062	24.577	0					23	10	3	0	0	0	0.01942	1	8414	8414		122.94	32.162	1	3980700			44649	411;11664	29561	29679	45218	45218					0.05613767551915316
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.766357421875	2	459.766374	917.518196	-0.10349	-4.758E-05	1.0183	0.00046817	0.9148	0.00042059	459.7669684363715	24.014	0.3074	24.014	23.899	24.206	0					17	7	3	0	0	0	0.082776	1	7395	7395		83.647	14.019	1	758170			44650	411;11664	29561	29679	45219	45219					0.05613767551915316
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7664489746094	2	459.766374	917.518196	-0.011813	-5.4312E-06	-1.0625	-0.00048849	-1.0743	-0.00049392	459.7656328166375	23.998	0.2124	23.998	23.926	24.138	0					10	5	3	0	0	0	0.19891	1	7405	7405		61.765	10.572	1	400200			44651	411;11664	29561	29679	45220	45220					0.05613767551915316
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7660217285156	2	459.766374	917.518196	-0.44947	-0.00020665	1.3663	0.00062817	0.91682	0.00042152	459.7671103694697	24.139	0.56727	24.139	24.028	24.595	0					29	11	5	0	0	0	0.058553	1	8273	8273		92.239	23.452	1	4860700			44652	411;11664	29561	29679	45221	45221					0.05613767551915316
TVNTSLVGK	9	Unmodified	_TVNTSLVGK_					0	0	0		CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;CCDC66|p.T207Nfs*2|2|0.31|ENSG00000180376|chr3:56566661-56566662|-/A|frameshift_variant;CCDC66|p.A265Sfs*9|1|0.15|ENSG00000180376|chr3:56567024-56567025|-/A|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	CCDC66|p.V732*|1|0.25|ENSG00000180376|chr3:56617454-56617454|A/-|frameshift_variant;nc|ENSG00000180376|A2RUB6-2|CCDC66	nc|ENSG00000180376|A2RUB6-2|CCDC66	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.7660827636719	2	459.766374	917.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.148	1	24.148	23.648	24.648	0								0	0	0	0.061685	1	8288	8288		82.831	13.203	1				44653	411;11664	29561	29679	45222	45222					0.05613767551915316
TVNTTHITI	9	Unmodified	_TVNTTHITI_					0	0	0			REV__ARSJ|p.F197Lfs*54|1|0.26|ENSG00000180801|chr4:113903483-113903483|A/-|frameshift_variant	REV__ARSJ|p.F197Lfs*54|1|0.26|ENSG00000180801|chr4:113903483-113903483|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7801513671875	2	500.277106	998.53966	1.092	0.00054629	-0.51768	-0.00025899	0.57429	0.0002873	500.2765543902017	23.712	0.41269	23.712	23.518	23.931	0					19	8	4	0	0	0	0.12239	1	8051	8051		74.255	0	1	1612500	+		44654	12228	29562	29680	45223	45223					0.04033152580609567
TVPAGVAS	8	Unmodified	_TVPAGVAS_					0	0	0		ENST00000557927.1_1_15:89169900-89169984:+|nuORF;ENST00000332810.3_1_15:89169900-89172472:+|nuORF	ENST00000557927.1_1_15:89169900-89169984:+|nuORF	ENST00000557927.1_1_15:89169900-89169984:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.1937561035156	2	351.195054	700.375555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.248	1	47.248	46.748	47.748	0								0	0	0	1.7419	1	17362	17362		18.324	0	1				44655	8682	29563	29681	45224	45224					0.013381798805198741
TVPGPSLGYR	10	Unmodified	_TVPGPSLGYR_					0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.5257873535156	3	349.525825	1045.55564	0.1735	6.0642E-05	-0.24816	-8.6738E-05	-0.07466	-2.6096E-05	349.52571571320846	23.61	0.23054	23.61	23.52	23.751	0					19	8	4	0	0	0	0.54197	1	6840	6840		37.508	0	1	881240	+		44656	16545	29564	29682	45225	45225					0.03468858817495857
TVPIAALGVS	10	Unmodified	_TVPIAALGVS_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-4|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-4|GARNL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2781677246094	2	464.279118	926.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.651	1	39.651	39.151	40.151	0								0	0	0	0.38797	1	15105	15105		34.173	1.3601	1		+		44657	14888	29565	29683	45226	45226					0.07747242074333371
TVPLEVFEY	9	Unmodified	_TVPLEVFEY_					0	0	0		MED10|p.N92Mfs*11|1|0.23|ENSG00000133398|chr5:6374358-6374358|T/-|frameshift_variant;ENSG00000133398|ENST00000255764|MED10	MED10|p.N92Mfs*11|1|0.23|ENSG00000133398|chr5:6374358-6374358|T/-|frameshift_variant	MED10|p.N92Mfs*11|1|0.23|ENSG00000133398|chr5:6374358-6374358|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.78173828125	2	548.78169	1095.54883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.367	1	32.367	31.867	32.867	0								0	0	0	0.28996	1	11250	11250		37.159	4.3467	1				44658	3853	29566	29684	45227	45227					0.004875011462900147
TVPLLTYR	8	Unmodified	_TVPLLTYR_					0	0	0			REV__ENST00000324545.8_2_X:40945168-40945276:+|nuORF	REV__ENST00000324545.8_2_X:40945168-40945276:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.7884826660156	2	481.78711	961.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.177	1	24.177	23.677	24.677	0								0	0	0	1.7419	1	7499	7499		18.324	1.8513	1		+		44659	18347	29567	29685	45228	45228					0.07734948311224343
TVPLPPVLDT	10	Unmodified	_TVPLPPVLDT_					0	0	0			REV__ENSG00000129595|ENST00000261486|EPB41L4A	REV__ENSG00000129595|ENST00000261486|EPB41L4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.2063293457031	3	351.20598	1050.59611	0.70224	0.00024663	0.24387	8.5647E-05	0.94611	0.00033228	351.20616981071083	21.606	0.54012	21.606	21.392	21.932	0					36	12	4	0	0	0	0.71484	1	6867	6867		14.086	0	1	800450	+		44660	14552	29568	29686	45229	45229					0.07283780417265007
TVPNAVTSL	9	Unmodified	_TVPNAVTSL_					0	0	0		ENST00000588559.5_1_19:55705613-55720813:-|nuORF;nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.2528381347656	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.336	1	39.336	38.836	39.836	0								0	0	0	0.22075	1	14973	14973		47.96	3.5823	1				44661	1635	29569	29687	45230	45230					0.03742078660570769
TVPPAPHG	8	Unmodified	_TVPPAPHG_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	388.20849609375	2	388.208495	774.402438	-0.027412	-1.0642E-05	-0.49492	-0.00019213	-0.52234	-0.00020278	388.20833941597	15.36	0.10229	15.36	15.3	15.402	0					8	4	3	0	0	0	0.78146	1	3330	3330		23.037	0	1	71735	+		44662	15057	29570	29688	45231	45231					0.0062128849172040645
TVPPNGGFAC	10	Unmodified	_TVPPNGGFAC_					0	0	0			REV__ENSG00000117877|ENST00000309424|POLR1G	REV__ENSG00000117877|ENST00000309424|POLR1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.72412109375	2	481.723652	961.432752	-0.40935	-0.00019719	1.5477	0.00074558	1.1384	0.00054838	481.7243168770205	36.061	0.16941	36.061	35.96	36.129	0					10	7	2	0	0	0	0.72821	1	12198	12198		17.365	2.5001	1	83244	+		44663	14208	29571	29689	45232	45232					-0.0495072090540134
TVPPSHCLAI	10	Unmodified	_TVPPSHCLAI_					0	0	0			REV__nc|ENSG00000102290|Q9BZA7-5|PCDH11X	REV__nc|ENSG00000102290|Q9BZA7-5|PCDH11X	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.275634765625	2	519.276052	1036.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.63	1	45.63	45.13	46.13	0								0	0	0	0.40446	1	18280	18280		29.15	6.1071	1		+		44664	13631	29572	29690	45233	45233					0.020744005711321734
TVPQGHAGY	9	Unmodified	_TVPQGHAGY_					0	0	0		PCDH17|p.C832Y|1|0.5|ENSG00000118946|chr13:57635041-57635041|G/A|missense_variant	PCDH17|p.C832Y|1|0.5|ENSG00000118946|chr13:57635041-57635041|G/A|missense_variant	PCDH17|p.C832Y|1|0.5|ENSG00000118946|chr13:57635041-57635041|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.22723388671875	2	465.227417	928.44028	-0.68235	-0.00031745	0.36792	0.00017117	-0.31443	-0.00014628	465.22775964091215	24.626	0.30599	24.626	24.519	24.825	0					14	7	3	0	0	0	0.087582	1	8313	8313		82.305	8.05	1	363710			44665	11902	29573	29691	45234	45234					-0.02680245313490559
TVPVEAVTSK	10	Unmodified	_TVPVEAVTSK_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7927856445312	2	515.792589	1029.57063	0.17227	8.8853E-05	1.0073	0.00051957	1.1796	0.00060842	515.792646759484	25.471	0.42023	25.471	25.264	25.684	0					19	8	4	0	0	0	0.46128	1	8912	8912		49.536	6.6718	1	1119600			44666	1733	29574	29692	45235	45235					0.05702305894828896
TVPVVIAW	8	Unmodified	_TVPVVIAW_					0	0	0		ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.76422119140625	2	442.765646	883.516739	-2.8997	-0.0012839	-1.2608	-0.00055826	-4.1605	-0.0018421	442.76512126874036	15.172	0.30614	15.172	14.959	15.265	0					19	12	2	0	0	0	0.72892	1	3320	3320		29.842	0	1	176320			44667	260	29575	29693	45236	45236					0.07032178253803067
TVQAVKST	8	Unmodified	_TVQAVKST_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.23748779296875	2	417.239993	832.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.36	1	19.36	18.86	19.86	0								0	0	0	1.7419	1	5828	5828		35.618	2.8059	1				44668	11701	29576	29694	45237	45237					0.04249809489101608
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.8037719726562	2	548.803488	1095.59242	1.2521	0.00068714	-0.59195	-0.00032486	0.66012	0.00036228	548.8032532232733	22.248	0.16376	22.248	22.154	22.318	0					9	5	2	0	0	0	0.090954	1	6239	6239		81.525	16.06	1	340480			44669	1685	29577	29695	45238	45238					0.04845110643418593
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.8037109375	2	548.803488	1095.59242	0.49947	0.00027411	0.060245	3.3062E-05	0.55972	0.00030718	548.8034957890243	22.557	0.31595	22.557	22.371	22.687	0					12	7	2	0	0	0	0.0019365	1	7350	7350		174.86	70.808	1	2425500			44670	1685	29577	29695	45239	45239					0.04845110643418593
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.8037719726562	2	548.803488	1095.59242	0.27314	0.0001499	-0.13923	-7.6412E-05	0.1339	7.3487E-05	548.8035022680149	22.443	0.16711	22.443	22.334	22.501	0					5	3	2	0	0	0	0.013298	1	7608	7608		133.99	37.803	1	497540			44671	1685	29577	29695	45240	45240					0.04845110643418593
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.8037109375	2	548.803488	1095.59242	-1.508	-0.00082757	1.0922	0.00059941	-0.41573	-0.00022815	548.8045181624514	22.33	0.23783	22.33	22.233	22.471	0					8	5	2	0	0	0	0.032181	1	6638	6638		106.88	28.616	1	359650			44672	1685	29577	29695	45241	45241					0.04845110643418593
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.20477294921875	3	366.204751	1095.59242	-0.15301	-5.6033E-05	0.25083	9.1853E-05	0.097816	3.5821E-05	366.2048135019685	22.447	0.16855	22.447	22.337	22.505	0					5	3	2	0	0	0	0.25716	1	7478	7478		80.455	32.495	1	397500			44673	1685	29577	29695	45242	45242					0.04845110643418593
TVQEKTFNK	9	Unmodified	_TVQEKTFNK_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.796142578125	2	547.795663	1093.57677	1.2357	0.00067689	0.019224	1.0531E-05	1.2549	0.00068742	547.7956751327031	17.219	0.10321	17.219	17.165	17.268	0					7	3	3	0	0	0	0.11898	1	4076	4076		75.043	18.61	1	177430			44674	5528	29578	29696	45243	45243					0.03372824126358864
TVQEKTFNK	9	Unmodified	_TVQEKTFNK_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.5327453613281	3	365.532868	1093.57677	0.74884	0.00027373	-0.96004	-0.00035092	-0.2112	-7.7199E-05	365.53243736241694	17.543	0.13033	17.543	17.46	17.59	0					6	3	2	0	0	0	0.50858	1	4982	4982		46.457	24.676	1	522960			44675	5528	29578	29696	45244	45244					0.03372824126358864
TVQEKTFNK	9	Unmodified	_TVQEKTFNK_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.7958984375	2	547.795663	1093.57677	0.47162	0.00025835	0.14692	8.0483E-05	0.61854	0.00033883	547.7957396859966	17.536	0.24847	17.536	17.448	17.696	0					13	6	3	0	0	0	0.0037134	1	4972	4972		164.46	73.854	1	1996300			44676	5528	29578	29696	45245	45245					0.03372824126358864
TVQEKTFNK	9	Unmodified	_TVQEKTFNK_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.7958984375	2	547.795663	1093.57677	0.42275	0.00023158	0.055591	3.0452E-05	0.47834	0.00026203	547.7958309140532	17.249	0.10442	17.249	17.208	17.312	0					7	3	3	0	0	0	0.070005	1	4295	4295		88.177	8.4643	1	281600			44677	5528	29578	29696	45246	45246					0.03372824126358864
TVQEKTFNK	9	Unmodified	_TVQEKTFNK_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.7958374023438	2	547.795663	1093.57677	1.8065	0.00098959	-1.6357	-0.00089604	0.17077	9.355E-05	547.7948473049511	17.492	0.26251	17.492	17.388	17.651	0					11	5	3	0	0	0	0.037712	1	5215	5215		101.46	18.709	1	2532400			44678	5528	29578	29696	45247	45247					0.03372824126358864
TVQEKTFNK	9	Unmodified	_TVQEKTFNK_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.7959594726562	2	547.795663	1093.57677	-1.5062	-0.00082506	2.2186	0.0012153	0.71245	0.00039028	547.7969709649291	17.3	0.11969	17.3	17.215	17.335	0					10	3	4	0	0	0	0.021015	1	4290	4290		120.31	27.163	1	260720			44679	5528	29578	29696	45248	45248					0.03372824126358864
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8042602539062	2	532.802957	1063.59136	1.0169	0.00054178	1.2837	0.00068394	2.3005	0.0012257	532.8035590543972	33.989	0.12553	33.989	33.953	34.078	0					9	5	2	0	0	0	0.15558	1	11096	11096		66.962	12.186	1	84016			44680	2180	29579	29697	45249	45249					0.06210896274501465
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.80322265625	2	532.802957	1063.59136	2.3538	0.0012541	-1.3308	-0.00070906	1.023	0.00054508	532.8020725706081	34.261	0.42771	34.261	34.037	34.465	0					18	11	3	0	0	0	0.0076184	1	12739	12739		146.79	50.97	1	381070			44681	2180	29579	29697	45250	45250					0.06210896274501465
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.8035278320312	2	532.802957	1063.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.058	1	34.058	33.558	34.558	0								0	0	0	0.029433	1	11469	11469		96.034	31.826	1				44682	2180	29579	29697	45251	45251					0.06210896274501465
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.803466796875	2	532.802957	1063.59136	1.0642	0.00056699	0.019815	1.0557E-05	1.084	0.00057755	532.8029279013026	34.233	0.33441	34.233	34.146	34.48	0					11	8	2	0	0	0	0.012936	1	13188	13188		134.77	41.622	1	225640			44683	2180	29579	29697	45252	45252					0.06210896274501465
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8042602539062	2	532.802957	1063.59136	1.9959	0.0010634	0.60384	0.00032173	2.5997	0.0013851	532.8034103701967	34.036	0.1467	34.036	33.936	34.083	0					6	4	2	0	0	0	0.28897	1	12022	12022		51.193	11.94	1	55104			44684	2180	29579	29697	45253	45253					0.06210896274501465
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8037719726562	2	532.802957	1063.59136	1.1439	0.00060949	-0.037062	-1.9747E-05	1.1069	0.00058974	532.8030456445446	34.031	0.11069	34.031	33.961	34.071	0					5	3	2	0	0	0	0.3269	1	12016	12016		47.96	10.148	1	78177			44685	2180	29579	29697	45254	45254					0.06210896274501465
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8031616210938	2	532.802957	1063.59136	0.71784	0.00038246	-0.11338	-6.0407E-05	0.60446	0.00032206	532.8028205690525	34.253	0.30723	34.253	34.101	34.409	0					11	6	2	0	0	0	0.015992	1	13076	13076		128.6	35.407	1	482580			44686	2180	29579	29697	45255	45255					0.06210896274501465
TVQELAIYK	9	Unmodified	_TVQELAIYK_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8026733398438	2	532.802957	1063.59136	1.7555	0.00093533	-1.4599	-0.00077785	0.29558	0.00015748	532.8021544003453	34.236	0.35507	34.236	33.989	34.344	0					14	7	2	0	0	0	0.022525	1	13094	13094		117.81	40.493	1	368560			44687	2180	29579	29697	45256	45256					0.06210896274501465
TVQENGALRQ	10	Unmodified	_TVQENGALRQ_					0	0	0			REV__ENSG00000160214|ENST00000497547|RRP1	REV__ENSG00000160214|ENST00000497547|RRP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2935791015625	2	558.293819	1114.57309	-0.15315	-8.5502E-05	-0.22389	-0.00012499	-0.37703	-0.0002105	558.2937147468983	31.02	0.25364	31.02	30.92	31.174	0					13	5	3	0	0	0	0.38194	1	11645	11645		58.23	5.141	1	1037000	+		44688	15740	29580	29698	45257	45257					0.02038154352521815
TVQFKEGKH	9	Unmodified	_TVQFKEGKH_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.8010864257812	2	537.290548	1072.56654	1.9764	0.0010619	0.85593	0.00045988	2.8324	0.0015218	537.2910553616143	18.314	0.85313	18.314	17.915	18.768	0					61	17	5	0	0	0	0.50761	1	5373	5373		24.519	16.284	1	35685000	+		44689	13997	29581	29699	45258	45258					0.03316261191821468
TVQFLVPQ	8	Unmodified	_TVQFLVPQ_					0	0	0		ENST00000544258.1_3_12:4598975-4611546:-|nuORF;ENSG00000047621|ENST00000261250|C12orf4	ENST00000544258.1_3_12:4598975-4611546:-|nuORF	ENST00000544258.1_3_12:4598975-4611546:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.267578125	2	466.26601	930.517468	2.6305	0.0012265	0.32702	0.00015248	2.9575	0.001379	466.2661363743657	34.709	0.40961	34.709	34.606	35.015	0					13	8	2	0	0	0	0.23898	1	13340	13340		116.9	8.8161	1	3866800			44690	1222	29582	29700	45259	45259					0.04942972902847487
TVQGKVFER	9	Unmodified	_TVQGKVFER_					0	0	0		ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.299560546875	2	532.298373	1062.58219	0.36931	0.00019658	0.43814	0.00023322	0.80744	0.0004298	532.2986440425046	21.207	0.15193	21.207	21.124	21.276	0					10	4	3	0	0	0	0.24169	1	5794	5794		56.632	8.9749	1	266110			44691	1834	29583	29701	45260	45260					0.053405477088290354
TVQGKVFER	9	Unmodified	_TVQGKVFER_					0	0	0		ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2993774414062	2	532.298373	1062.58219	0.12497	6.6521E-05	0.91512	0.00048712	1.0401	0.00055364	532.2988229988259	21.558	0.23446	21.558	21.461	21.696	0					13	5	4	0	0	0	0.039418	1	6856	6856		99.788	31.303	1	2008000			44692	1834	29583	29701	45261	45261					0.053405477088290354
TVQGKVFER	9	Unmodified	_TVQGKVFER_					0	0	0		ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.29931640625	2	532.298373	1062.58219	0.28759	0.00015308	0.77443	0.00041223	1.062	0.00056531	532.2987454135459	21.25	0.16805	21.25	21.182	21.35	0					10	5	3	0	0	0	0.079477	1	6063	6063		84.817	37.16	1	286730			44693	1834	29583	29701	45262	45262					0.053405477088290354
TVQGKVFER	9	Unmodified	_TVQGKVFER_					0	0	0		ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2987060546875	2	532.298373	1062.58219	0.28873	0.00015369	0.21418	0.00011401	0.50291	0.0002677	532.2984715151388	21.449	0.2672	21.449	21.341	21.608	0					12	5	3	0	0	0	0.012115	1	7106	7106		136.52	56.06	1	2220300			44694	1834	29583	29701	45263	45263					0.053405477088290354
TVQGKVFER	9	Unmodified	_TVQGKVFER_					0	0	0		ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.2989501953125	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.36	1	21.36	20.86	21.86	0								0	0	0	0.26578	1	6178	6178		41.427	0	1				44695	1834	29583	29701	45264	45264					0.053405477088290354
TVQHGAVY	8	Unmodified	_TVQHGAVY_					0	0	0		ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.72406005859375	2	437.72451	873.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.213	1	23.213	22.713	23.713	0								0	0	0	1.7419	1	6683	6683		37.159	8.0096	1				44696	4578	29584	29702	45265	45265					-0.0073134382514581375
TVQHGAVY	8	Unmodified	_TVQHGAVY_					0	0	0		ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.724365234375	2	437.72451	873.434466	0.61319	0.00026841	-1.0131	-0.00044346	-0.39992	-0.00017505	437.72412515774045	23.53	0.1719	23.53	23.444	23.616	0					10	4	3	0	0	0	0.59411	1	7815	7815		50.025	7.5501	1	626410			44697	4578	29584	29702	45266	45266					-0.0073134382514581375
TVQHGAVY	8	Unmodified	_TVQHGAVY_					0	0	0		ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7243957519531	2	437.72451	873.434466	-0.56656	-0.000248	0.5258	0.00023015	-0.04076	-1.7842E-05	437.72467263640505	23.442	0.26688	23.442	23.335	23.602	0					8	5	2	0	0	0	0.65276	1	7963	7963		40.573	8.6178	1	399050			44698	4578	29584	29702	45267	45267					-0.0073134382514581375
TVQIERGYTR	10	Unmodified	_TVQIERGYTR_					0	0	0			REV__ENSG00000153002|ENST00000282957|CPB1	REV__ENSG00000153002|ENST00000282957|CPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.22265625	3	408.222805	1221.64658	-0.54199	-0.00022125	0.23472	9.5817E-05	-0.30728	-0.00012544	408.2229925813567	15.422	0.40013	15.422	15.314	15.714	0					12	8	2	0	0	0	0.536	1	4071	4071		41.427	3.8267	1	514890	+		44699	15526	29585	29703	45268	45268					0.044627027949900366
TVQINQAI	8	Unmodified	_TVQINQAI_					0	0	0		nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.752685546875	2	443.753267	885.491981	-1.1592	-0.00051442	0.58437	0.00025932	-0.57487	-0.0002551	443.7535236635853	23.39	0.6131	23.39	23.246	23.86	0					41	21	2	0	0	0	0.59773	1	6991	6991		49.442	0	1	421240			44700	11617	29586	29704	45269	45269					0.04465498380432109
TVQINQAI	8	Unmodified	_TVQINQAI_					0	0	0		nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.75299072265625	2	443.753267	885.491981	-0.49688	-0.00022049	-0.12116	-5.3767E-05	-0.61804	-0.00027426	443.75315593040375	23.347	0.63981	23.347	23.297	23.937	0					26	15	2	0	0	0	0.59773	1	7142	7142		49.442	1.7842	1	323250			44701	11617	29586	29704	45270	45270					0.04465498380432109
TVQLEDVKL	9	Unmodified	_TVQLEDVKL_					0	0	0		tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.800537109375	2	522.800414	1043.58628	-1.2977	-0.00067844	1.8177	0.0009503	0.52	0.00027186	522.8011596362858	35.15	0.23642	35.15	35.048	35.285	0					9	7	2	0	0	0	0.30841	1	12488	12488		49.536	5.1589	1	165570			44702	22771	29587	29705	45271	45271					0.06622592411895312
TVQMCPQGV	9	Unmodified	_TVQMCPQGV_					0	0	0			REV__nc|ENSG00000196511|Q9H3S4-2|TPK1	REV__nc|ENSG00000196511|Q9H3S4-2|TPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7242431640625	2	481.725338	961.436123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.255	1	36.255	35.755	36.755	0								0	0	0	0.3428	1	14105	14105		26.693	3.6504	1		+		44703	17261	29588	29706	45272	45272					-0.04613794123054049
TVQPQRALA	9	Unmodified	_TVQPQRALA_					0	0	0			REV__CCNO|p.V265Wfs*4|1|0.14|ENSG00000152669|chr5:55231635-55231635|C/-|frameshift_variant	REV__CCNO|p.V265Wfs*4|1|0.14|ENSG00000152669|chr5:55231635-55231635|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	328.5259704589844	3	328.525936	982.555979	0.54914	0.00018041	-0.16706	-5.4884E-05	0.38208	0.00012552	328.5258961063656	15.508	0.55911	15.508	15.259	15.818	0					15	11	2	0	0	0	0.55379	1	4266	4266		26.693	7.5894	1	890420	+		44704	12374	29589	29707	45273	45273					0.06400278537364557
TVQQPYGLK	9	Unmodified	_TVQQPYGLK_					0	0	0		TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.G505Rfs*7|1|0.38|ENSG00000104321|chr8:72055452-72055453|-/T|frameshift_variant;TRPA1|p.H380R|1|0.05|ENSG00000104321|chr8:72056972-72056972|T/C|missense_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2886962890625	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.62	1	26.62	26.12	27.12	0								0	0	0	0.13137	1	9427	9427		64.207	0.67341	1				44705	2277	29590	29708	45274	45274					0.04541742960282136
TVQVIRTQ	8	Unmodified	_TVQVIRTQ_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.K631Nfs*9|1|0.08|ENSG00000205038|chr8:109408125-109408125|A/-|frameshift_variant;PKHD1L1|p.N744Ffs*5|1|0.09|ENSG00000205038|chr8:109412406-109412407|-/ACTTTAACTTTAG|frameshift_variant;PKHD1L1|p.N718Tfs*31|1|0.35|ENSG00000205038|chr8:109412328-109412328|A/-|frameshift_variant;PKHD1L1|p.F723Lfs*26|1|0.15|ENSG00000205038|chr8:109412344-109412344|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.79|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.77947998046875	2	472.779816	943.545079	-1.4981	-0.00070826	1.1983	0.00056653	-0.29976	-0.00014172	472.78028207894664	19.314	0.11478	19.314	19.243	19.357	0					7	3	3	0	0	0	0.39125	1	5204	5204		71.877	10.186	1	167050			44706	7732	29591	29709	45275	45275					0.07104876163089102
TVQVIRTQ	8	Unmodified	_TVQVIRTQ_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.K631Nfs*9|1|0.08|ENSG00000205038|chr8:109408125-109408125|A/-|frameshift_variant;PKHD1L1|p.N744Ffs*5|1|0.09|ENSG00000205038|chr8:109412406-109412407|-/ACTTTAACTTTAG|frameshift_variant;PKHD1L1|p.N718Tfs*31|1|0.35|ENSG00000205038|chr8:109412328-109412328|A/-|frameshift_variant;PKHD1L1|p.F723Lfs*26|1|0.15|ENSG00000205038|chr8:109412344-109412344|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.79|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.779541015625	2	472.779816	943.545079	0.63408	0.00029978	-1.0683	-0.00050506	-0.4342	-0.00020528	472.7792141863698	19.533	0.16598	19.533	19.425	19.591	0					8	3	3	0	0	0	0.38291	1	6071	6071		72.879	7.4139	1	1036100			44707	7732	29591	29709	45276	45276					0.07104876163089102
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.82275390625	2	532.82115	1063.62775	2.4583	0.0013099	0.25313	0.00013488	2.7115	0.0014447	532.8212838815667	35.565	0.22717	35.565	35.485	35.713	0					23	11	3	0	0	0	0.058553	1	11647	11647		92.239	11.784	1	129330			44708	2845	29592	29710	45277	45277					0.09847773171213703
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.8213500976562	2	532.82115	1063.62775	1.0217	0.00054438	-0.023603	-1.2576E-05	0.99808	0.0005318	532.8210777475489	35.561	0.2225	35.561	35.479	35.702	0					20	11	2	0	0	0	0.073657	1	11643	11643		86.882	21.416	1	79507			44709	2845	29592	29710	45278	45278					0.09847773171213703
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.82275390625	2	532.82115	1063.62775	1.9529	0.0010406	-0.57413	-0.00030591	1.3788	0.00073466	532.8208948616473	35.848	0.36219	35.848	35.722	36.084	0					25	9	4	0	0	0	0.23738	1	13449	13449		57.149	9.1892	1	678910			44710	2845	29592	29710	45279	45279					0.09847773171213703
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.8223266601562	2	532.82115	1063.62775	1.0741	0.0005723	0.0093168	4.9642E-06	1.0834	0.00057727	532.821103311803	35.852	0.41477	35.852	35.716	36.13	0					34	12	4	0	0	0	0.022589	1	13894	13894		117.71	27.105	1	1168700			44711	2845	29592	29710	45280	45280					0.09847773171213703
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.8228149414062	2	532.82115	1063.62775	2.0023	0.0010669	-0.050388	-2.6848E-05	1.9519	0.00104	532.8212014905575	35.614	0.20961	35.614	35.531	35.74	0					20	8	3	0	0	0	0.44949	1	12680	12680		37.508	2.3561	1	223190			44712	2845	29592	29710	45281	45281					0.09847773171213703
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8214111328125	2	532.82115	1063.62775	0.71744	0.00038227	0.19854	0.00010579	0.91598	0.00048805	532.821181953488	35.745	0.51257	35.745	35.637	36.149	0					24	10	3	0	0	0	0.043448	1	13812	13812		97.597	32.131	1	1852100			44713	2845	29592	29710	45282	45282					0.09847773171213703
TVRARHIE	8	Unmodified	_TVRARHIE_					0	0	0		ENST00000445701.5_1_3:3150344-3168296:-|nuORF	ENST00000445701.5_1_3:3150344-3168296:-|nuORF	ENST00000445701.5_1_3:3150344-3168296:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	327.8578186035156	3	327.857797	980.551562	0.55067	0.00018054	-0.57097	-0.0001872	-0.020304	-6.6568E-06	327.8576380578623	14.918	1.7984	14.918	14.764	16.563	0					86	36	5	0	0	0	0.7126	1	3960	3960		34.173	0	1	4784200			44714	9613	29593	29711	45283	45283					0.060508141144509864
TVRARLWL	8	Unmodified	_TVRARLWL_					0	0	0		HERC1|p.R4402W|1|0.33|ENSG00000103657|chr15:63626056-63626056|G/A|missense_variant	HERC1|p.R4402W|1|0.33|ENSG00000103657|chr15:63626056-63626056|G/A|missense_variant	HERC1|p.R4402W|1|0.33|ENSG00000103657|chr15:63626056-63626056|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.8778381347656	3	338.878421	1013.61343	0.53085	0.00017989	-1.888	-0.00063979	-1.3571	-0.0004599	338.8777400450526	25.13	0.26618	25.13	25.024	25.29	0					8	5	3	0	0	0	0.72381	1	8896	8896		49.442	0	1	169520			44715	11182	29594	29712	45284	45284					0.10717165533594653
TVRELVEAL	9	Unmodified	_TVRELVEAL_					0	0	0		NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3010864257812	2	515.300581	1028.58661	1.4005	0.0007217	-1.2107	-0.00062387	0.18985	9.7831E-05	515.299936559744	40.713	0.13795	40.713	40.645	40.783	0					12	6	2	0	0	0	0.16002	1	16036	16036		66.429	0	1	160690			44716	2574	29595	29713	45285	45285					0.07346012131756652
TVRESPATP	9	Unmodified	_TVRESPATP_					0	0	0		KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant;nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1;KCNH1|p.V798I|2|0.43|ENSG00000143473|chr1:210683859-210683859|C/T|missense_variant	KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant	KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.25341796875	2	479.253631	956.49271	-0.6617	-0.00031712	0.68677	0.00032914	0.025072	1.2016E-05	479.2536941876444	27.62	0.57432	27.62	27.255	27.829	0					18	11	2	0	0	0	0.28897	1	9968	9968		51.193	10.62	1	247950			44717	4558	29596	29714	45286	45286					0.012722930294785328
TVRFNVLK	8	Unmodified	_TVRFNVLK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	326.2026672363281	3	326.202793	975.58655	0.53112	0.00017325	-0.49496	-0.00016146	0.036161	1.1796E-05	326.2025930364493	29.481	0.3006	29.481	29.394	29.694	0					15	7	3	0	0	0	0.3961	1	10541	10541		82.241	18.033	1	320640			44718	4496	29597	29715	45287	45287					0.09778056922425549
TVRFNVLK	8	Unmodified	_TVRFNVLK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	326.2027282714844	3	326.202793	975.58655	0.55489	0.00018101	-0.57764	-0.00018843	-0.022751	-7.4215E-06	326.2025736860784	29.485	0.34973	29.485	29.35	29.7	0					13	7	3	0	0	0	0.64144	1	10915	10915		62.107	21.329	1	311670			44719	4496	29597	29715	45288	45288					0.09778056922425549
TVRHLKGGY	9	Unmodified	_TVRHLKGGY_					0	0	0			REV__ENSG00000144909|ENST00000296220|OSBPL11	REV__ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7925415039062	2	515.793258	1029.57196	1.3176	0.00067963	-1.2833	-0.00066191	0.034351	1.7718E-05	515.7921750231683	25.255	0.19521	25.255	25.152	25.347	0					12	5	3	0	0	0	0.43426	1	7577	7577		38.806	0.99462	1	155600	+		44720	15251	29598	29716	45289	45289					0.05835984774262215
TVRMEKEVL	9	Unmodified	_TVRMEKEVL_					0	0	0			REV__DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	REV__DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.8741455078125	3	368.874236	1103.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.757	1	28.757	28.257	29.257	0								0	0	0	0.17378	1	10198	10198		53.089	0	1		+		44721	12753	29599	29717	45290	45290					0.05322341288410826
TVRPPPIGSA	10	Unmodified	_TVRPPPIGSA_					0	0	0			REV__BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant	REV__BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	332.1941833496094	3	332.194186	993.56073	-0.70268	-0.00023342	0.54194	0.00018003	-0.16074	-5.3396E-05	332.19437693130925	17.271	0.38152	17.271	16.983	17.365	0					29	12	3	0	0	0	0.74091	1	4213	4213		14.694	0	1	472300	+		44722	12292	29600	29718	45291	45291					0.06369162680130103
TVRQARSAY	9	Unmodified	_TVRQARSAY_					0	0	0			REV__ENST00000473174.1_2_9:116856172-116859990:-|nuORF	REV__ENST00000473174.1_2_9:116856172-116859990:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2842407226562	2	526.285797	1050.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.738	1	41.738	41.238	42.238	0								0	0	0	0.2591	1	16621	16621		42.396	1.8235	1		+		44723	14887	29601	29719	45292	45292					0.03378492906290376
TVRSSPAPSE	10	Unmodified	_TVRSSPAPSE_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.761474609375	2	515.76182	1029.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.902	1	23.902	23.402	24.402	0								0	0	0	0.37602	1	7242	7242		37.812	0.65241	1				44724	1911	29602	29720	45293	45293					-0.00448625804438052
TVSAATTAAV	10	Unmodified	_TVSAATTAAV_					0	0	0			REV__ENST00000469390.5_1_1:156876157-156877908:+|nuORF	REV__ENST00000469390.5_1_1:156876157-156877908:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	446.24468994140625	2	446.242732	890.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.765	1	18.765	18.265	19.265	0								0	0	0	0.24422	1	4962	4962		58.782	2.0609	1		+		44725	18427	29603	29721	45294	45294					0.021294882808774673
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2607727050781	2	458.260925	914.507297	0.78535	0.0003599	-1.3856	-0.00063499	-0.60029	-0.00027509	458.2603769397678	23.099	0.47781	23.099	22.846	23.324	0					25	11	4	0	0	0	0.07136	1	7588	7588		87.696	7.9839	1	4543200			44726	4050	29604	29722	45295	45295					0.04662365177614447
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.260498046875	2	458.260925	914.507297	-0.15619	-7.1575E-05	-0.96754	-0.00044339	-1.1237	-0.00051496	458.2605006390646	23.02	0.16725	23.02	22.911	23.078	0					6	3	2	0	0	0	0.28897	1	7883	7883		51.193	1.6567	1	803850			44727	4050	29604	29722	45296	45296					0.04662365177614447
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2607727050781	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.869	1	22.869	22.369	23.369	0								0	0	0	0.14881	1	6885	6885		60.118	1.8883	1				44728	4050	29604	29722	45297	45297					0.04662365177614447
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2606506347656	2	458.260925	914.507297	0.13305	6.0973E-05	-1.3077	-0.00059927	-1.1746	-0.00053829	458.260346595762	22.874	0.26659	22.874	22.737	23.003	0					9	6	2	0	0	0	0.07136	1	6877	6877		87.696	4.946	1	367580			44729	4050	29604	29722	45298	45298					0.04662365177614447
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.26092529296875	2	458.260925	914.507297	-0.43978	-0.00020153	0.1336	6.1223E-05	-0.30618	-0.00014031	458.2609409146814	22.999	0.31214	22.999	22.889	23.201	0					15	6	3	0	0	0	0.023928	1	7720	7720		115.49	25.124	1	4784500			44730	4050	29604	29722	45299	45299					0.04662365177614447
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2607116699219	2	458.260925	914.507297	0.87948	0.00040303	-2.1912	-0.0010041	-1.3117	-0.00060112	458.2600920923891	23.03	0.51253	23.03	22.671	23.184	0					19	10	3	0	0	0	0.07136	1	7734	7734		87.696	13.441	1	2451200			44731	4050	29604	29722	45300	45300					0.04662365177614447
TVSAGVPEEM	10	Unmodified	_TVSAGVPEEM_					0	0	0		ENST00000473758.5_1_14:23537124-23537340:-|nuORF	ENST00000473758.5_1_14:23537124-23537340:-|nuORF	ENST00000473758.5_1_14:23537124-23537340:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2406005859375	2	510.239332	1018.46411	0.96017	0.00048992	-0.032157	-1.6408E-05	0.92802	0.00047351	510.23924887969775	38.075	0.13184	38.075	38.03	38.162	0					10	6	2	0	0	0	0.52707	1	14466	14466		42.396	7.1954	1	42338			44732	9879	29605	29723	45301	45301					-0.044381926619848855
TVSATSPNK	9	Unmodified	_TVSATSPNK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.73992919921875	2	452.740357	903.46616	0.68114	0.00030838	-1.2763	-0.00057781	-0.59511	-0.00026943	452.73978097766667	15.2	0.27339	15.2	15.023	15.297	0					16	6	3	0	0	0	0.037924	1	3851	3851		101.25	13.076	1	456170			44733	2404	29606	29724	45302	45302					0.010566041381366631
TVSATSPNK	9	Unmodified	_TVSATSPNK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7403869628906	2	452.740357	903.46616	-0.11806	-5.3449E-05	-0.10398	-4.7078E-05	-0.22204	-0.00010053	452.74026327642946	15.156	0.21851	15.156	14.994	15.212	0					9	4	3	0	0	0	0.13726	1	4074	4074		70.816	9.8443	1	353990			44734	2404	29606	29724	45303	45303					0.010566041381366631
TVSATSPNK	9	Unmodified	_TVSATSPNK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7398986816406	2	452.740357	903.46616	-0.41284	-0.00018691	0.039206	1.775E-05	-0.37363	-0.00016916	452.74032836981104	15.122	0.2167	15.122	14.961	15.178	0					8	4	2	0	0	0	0.085655	1	3907	3907		82.75	18.543	1	426850			44735	2404	29606	29724	45304	45304					0.010566041381366631
TVSATSPNK	9	Unmodified	_TVSATSPNK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7401123046875	2	452.740357	903.46616	0.87694	0.00039703	-1.7027	-0.00077088	-0.82575	-0.00037385	452.73947818514443	15.122	0.31869	15.122	14.945	15.263	0					10	6	2	0	0	0	0.022525	1	3923	3923		117.81	40.964	1	356010			44736	2404	29606	29724	45305	45305					0.010566041381366631
TVSDAILRY	9	Unmodified	_TVSDAILRY_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2867431640625	2	519.284931	1036.55531	1.3849	0.00071916	-0.57348	-0.0002978	0.81143	0.00042136	519.2846285120901	39.315	0.40178	39.315	39.189	39.591	0					32	14	3	0	0	0	0.054723	1	14962	14962		87.696	5.4559	1	597170			44737	931	29607	29725	45306	45306					0.03849439097643881
TVSDAILRY	9	Unmodified	_TVSDAILRY_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2855224609375	2	519.284931	1036.55531	0.18135	9.4171E-05	1.1226	0.00058295	1.304	0.00067712	519.2855193381831	39.154	0.1845	39.154	39.046	39.231	0					24	10	3	0	0	0	0.18416	1	13155	13155		66.429	13.078	1	212130			44738	931	29607	29725	45307	45307					0.03849439097643881
TVSDAILRY	9	Unmodified	_TVSDAILRY_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2860107421875	2	519.284931	1036.55531	1.6279	0.00084537	-0.94293	-0.00048965	0.68502	0.00035572	519.2844822788306	39.33	0.27816	39.33	39.156	39.434	0					28	9	4	0	0	0	0.019258	1	15438	15438		131.03	34.841	1	1430800			44739	931	29607	29725	45308	45308					0.03849439097643881
TVSDAILRY	9	Unmodified	_TVSDAILRY_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2850341796875	2	519.284931	1036.55531	0.97693	0.00050731	0.27894	0.00014485	1.2559	0.00065216	519.2851698441067	39.118	0.24239	39.118	38.984	39.227	0					16	12	2	0	0	0	0.070005	1	13957	13957		93.195	10.955	1	199730			44740	931	29607	29725	45309	45309					0.03849439097643881
TVSDAILRY	9	Unmodified	_TVSDAILRY_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2854614257812	2	519.284931	1036.55531	-1.3715	-0.00071218	2.2555	0.0011713	0.88406	0.00045908	519.2858191403326	39.111	0.22666	39.111	39.012	39.239	0					16	11	3	0	0	0	0.25761	1	13948	13948		56.721	14.325	1	134970			44741	931	29607	29725	45310	45310					0.03849439097643881
TVSDAILRY	9	Unmodified	_TVSDAILRY_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.285400390625	2	519.284931	1036.55531	1.6043	0.00083307	-1.4126	-0.00073355	0.19165	9.952E-05	519.2844610805738	39.284	0.46222	39.284	39.064	39.526	0					23	9	3	0	0	0	0.0030642	1	15504	15504		166.68	75.902	1	2179600			44742	931	29607	29725	45311	45311					0.03849439097643881
TVSELVISK	9	Unmodified	_TVSELVISK_					0	0	0		ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant;ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.28955078125	2	488.289682	974.564812	1.2776	0.00062386	-0.84223	-0.00041125	0.43542	0.00021261	488.2891445436452	30.937	0.175	30.937	30.861	31.036	0					12	7	2	0	0	0	0.063171	1	9899	9899		90.601	23.107	1	125030			44743	7308	29608	29726	45312	45312					0.07651207383173642
TVSELVISK	9	Unmodified	_TVSELVISK_					0	0	0		ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant;ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.28936767578125	2	488.289682	974.564812	0.40828	0.00019936	-0.82901	-0.0004048	-0.42074	-0.00020544	488.2891852380285	31.221	0.30954	31.221	31.092	31.402	0					19	7	4	0	0	0	0.003936	1	11338	11338		163.15	44.408	1	943300			44744	7308	29608	29726	45313	45313					0.07651207383173642
TVSELVISK	9	Unmodified	_TVSELVISK_					0	0	0		ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant;ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.28955078125	2	488.289682	974.564812	-0.079273	-3.8708E-05	-0.37546	-0.00018333	-0.45474	-0.00022204	488.28942207674726	31.193	0.36969	31.193	31.044	31.414	0					18	8	3	0	0	0	0.012936	1	11729	11729		134.77	49.605	1	1274100			44745	7308	29608	29726	45314	45314					0.07651207383173642
TVSELVISK	9	Unmodified	_TVSELVISK_					0	0	0		ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant;ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2898864746094	2	488.289682	974.564812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.992	1	30.992	30.492	31.492	0								0	0	0	0.17415	1	10620	10620		54.722	6.7628	1				44746	7308	29608	29726	45315	45315					0.07651207383173642
TVSELVISK	9	Unmodified	_TVSELVISK_					0	0	0		ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant;ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.28936767578125	2	488.289682	974.564812	-0.52242	-0.00025509	-0.053713	-2.6227E-05	-0.57613	-0.00028132	488.2896144048776	31.182	0.30956	31.182	31.027	31.336	0					13	6	3	0	0	0	0.090954	1	11618	11618		81.525	25.091	1	700390			44747	7308	29608	29726	45316	45316					0.07651207383173642
TVSEPAVIK	9	Unmodified	_TVSEPAVIK_					0	0	0		nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L;ENST00000527005.5_1_6:135286419-135303731:-|nuORF	nc|ENSG00000112339|Q9Y450-4|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.2765197753906	2	472.276575	942.538597	-0.022986	-1.0856E-05	-0.48103	-0.00022718	-0.50402	-0.00023804	472.27632118248954	25.982	0.56166	25.982	25.744	26.306	0					34	15	3	0	0	0	0.33044	1	7967	7967		47.657	6.8792	1	323540			44748	2738	29609	29727	45317	45317					0.06502938211701803
TVSESGTATLK	11	Unmodified	_TVSESGTATLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	547.2913818359375	2	547.290411	1092.56627	1.6802	0.00091953	-0.61287	-0.00033542	1.0673	0.00058412	547.2901420098641	21.249	0.15276	21.249	21.173	21.326	0					6	4	2	0	0	0	0.11154	1	5828	5828		86.882	37.346	1	99149			44749	7237	29610	29728	45318	45318					0.023687966812758532
TVSESGTATLK	11	Unmodified	_TVSESGTATLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.2909545898438	2	547.290411	1092.56627	1.8542	0.0010148	-0.97027	-0.00053102	0.88396	0.00048378	547.2899499092769	21.571	0.15015	21.571	21.474	21.624	0					8	3	3	0	0	0	0.0092585	1	6884	6884		125.68	60.217	1	1330500			44750	7237	29610	29728	45319	45319					0.023687966812758532
TVSESGTATLK	11	Unmodified	_TVSESGTATLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.29150390625	2	547.290411	1092.56627	4.7111	0.0025784	-2.1852	-0.001196	2.5259	0.0013824	547.2891831858359	21.295	0.10335	21.295	21.233	21.337	0					5	3	2	0	0	0	0.37057	1	6084	6084		54.722	12.248	1	65607			44751	7237	29610	29728	45320	45320					0.023687966812758532
TVSESGTATLK	11	Unmodified	_TVSESGTATLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.2908935546875	2	547.290411	1092.56627	0.74016	0.00040509	0.34657	0.00018967	1.0867	0.00059476	547.2904997320223	21.483	0.16833	21.483	21.374	21.542	0					8	3	3	0	0	0	0.07149	1	7141	7141		96.665	35.693	1	878420			44752	7237	29610	29728	45321	45321					0.023687966812758532
TVSESGTATLK	11	Unmodified	_TVSESGTATLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.2911987304688	2	547.290411	1092.56627	1.951	0.0010678	0.38841	0.00021257	2.3394	0.0012803	547.2904924351092	21.366	0.11304	21.366	21.261	21.374	0					4	2	2	0	0	0	0.074075	1	6171	6171		96.034	26.406	1	93203			44753	7237	29610	29728	45322	45322					0.023687966812758532
TVSESGTATLK	11	Unmodified	_TVSESGTATLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2906494140625	2	547.290411	1092.56627	0.53436	0.00029245	0.24311	0.00013305	0.77748	0.00042551	547.2903799993223	21.497	0.21646	21.497	21.387	21.603	0					10	4	3	0	0	0	0.11154	1	7019	7019		86.882	35.546	1	833430			44754	7237	29610	29728	45323	45323					0.023687966812758532
TVSESGTATLK	11	Unmodified	_TVSESGTATLK_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-2|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2908325195312	2	547.290411	1092.56627	1.8939	0.0010365	-1.0085	-0.00055192	0.88546	0.00048461	547.2897828260561	21.479	0.21656	21.479	21.37	21.587	0					10	4	3	0	0	0	0.046463	1	7011	7011		106.88	39.387	1	1129900			44755	7237	29610	29728	45324	45324					0.023687966812758532
TVSETAKDLV	10	Unmodified	_TVSETAKDLV_					0	0	0		nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2831420898438	2	531.787504	1061.56045	3.4165	0.0018169	-2.4705	-0.0013138	0.94602	0.00050308	531.7860632791649	17.059	0.31618	17.059	16.859	17.175	0					22	6	4	0	0	0	0.50881	1	4891	4891		44.377	7.2181	1	1802900			44756	3052	29611	29729	45325	45325					0.03213698169611234
TVSGIQVRY	9	Unmodified	_TVSGIQVRY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7854919433594	2	511.785099	1021.55564	1.1613	0.00059436	-0.70251	-0.00035954	0.45882	0.00023482	511.7847739889934	32.636	0.17256	32.636	32.537	32.71	0					13	7	3	0	0	0	0.30951	1	10553	10553		49.442	3.4693	1	105570			44757	3595	29612	29730	45326	45326					0.045728588175165896
TVSGIQVRY	9	Unmodified	_TVSGIQVRY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.78509521484375	2	511.785099	1021.55564	1.0328	0.00052859	-0.8514	-0.00043573	0.18144	9.2857E-05	511.784552328463	32.901	0.24343	32.901	32.786	33.03	0					15	6	4	0	0	0	0.016683	1	12115	12115		127.46	34.266	1	527460			44758	3595	29612	29730	45327	45327					0.045728588175165896
TVSGIQVRY	9	Unmodified	_TVSGIQVRY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.78546142578125	2	511.785099	1021.55564	-0.34367	-0.00017588	0.35921	0.00018384	0.015541	7.9535E-06	511.7852116840516	32.704	0.42525	32.704	32.592	33.018	0					22	12	3	0	0	0	0.016683	1	10912	10912		127.46	34.266	1	243170			44759	3595	29612	29730	45328	45328					0.045728588175165896
TVSGIQVRY	9	Unmodified	_TVSGIQVRY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7854309082031	2	511.785099	1021.55564	1.2373	0.00063322	-1.935	-0.00099028	-0.69768	-0.00035706	511.7839086837461	32.911	0.89348	32.911	32.555	33.448	0					28	17	4	0	0	0	0.016683	1	12524	12524		127.46	42.546	1	1311800			44760	3595	29612	29730	45329	45329					0.045728588175165896
TVSGIQVRY	9	Unmodified	_TVSGIQVRY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2847900390625	2	511.785099	1021.55564	0.40025	0.00020484	-0.7793	-0.00039883	-0.37905	-0.00019399	511.78487730346467	32.662	0.361	32.662	32.579	32.94	0					17	10	2	0	0	0	0.30951	1	11364	11364		49.442	13.823	1	254360			44761	3595	29612	29730	45330	45330					0.045728588175165896
TVSGIQVRY	9	Unmodified	_TVSGIQVRY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.78497314453125	2	511.785099	1021.55564	1.409	0.00072111	-1.4073	-0.00072025	0.0016771	8.583E-07	511.7842378462757	32.844	0.4448	32.844	32.706	33.151	0					17	9	4	0	0	0	0.0071053	1	12415	12415		148.99	50.357	1	1746700			44762	3595	29612	29730	45331	45331					0.045728588175165896
TVSGNTDIQ	9	Unmodified	_TVSGNTDIQ_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-4|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF;CCDC14|p.E558Vfs*7|1|0.04|ENSG00000175455|chr3:123931228-123931229|-/TTGAATAA|frameshift_variant;CCDC14|p.E558Rfs*13|1|0.03|ENSG00000175455|chr3:123931229-123931230|-/T|frameshift_variant;CCDC14|p.V615Afs*13|1|0.05|ENSG00000175455|chr3:123915674-123915675|-/TAATGAG|frameshift_variant;ENST00000485949.5_1_3:123652514-123665686:-|nuORF;nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.72540283203125	2	467.727446	933.44034	-0.50944	-0.00023828	-1.7764	-0.00083085	-2.2858	-0.0010691	467.726521277773	15.743	0.31769	15.743	15.497	15.815	0					14	6	3	0	0	0	0.21263	1	4212	4212		60.118	0	1	123070			44763	6558	29613	29731	45332	45332					-0.029042901041407276
TVSGVTAAIAS	11	Unmodified	_TVSGVTAAIAS_					0	0	0			REV__CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant	REV__CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7683410644531	2	488.769114	975.523675	-2.8985	-0.0014167	2.1129	0.0010327	-0.78553	-0.00038394	488.77009087558855	23.837	0.29277	23.837	23.701	23.994	0					10	7	2	0	0	0	0.37008	1	7329	7329		54.776	5.2403	1	114150	+		44764	12391	29614	29732	45333	45333					0.03493446343713913
TVSIASSVLQ	10	Unmodified	_TVSIASSVLQ_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7847900390625	2	502.784764	1003.55498	-2.0648	-0.0010382	2.6423	0.0013285	0.57741	0.00029031	502.7861302482902	27.288	0.22223	27.288	27.152	27.374	0					8	5	2	0	0	0	0.47859	1	8896	8896		47.657	11.211	1	105270	+		44765	15602	29615	29733	45334	45334					0.053340193778240064
TVSITPPTSK	10	Unmodified	_TVSITPPTSK_					0	0	0			REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7925415039062	2	515.792589	1029.57063	1.223	0.0006308	-0.37778	-0.00019486	0.84519	0.00043594	515.7919849010915	25.548	0.34087	25.548	25.415	25.756	0					20	8	4	0	0	0	0.60281	1	8735	8735		33.922	0	1	1096700	+		44766	18334	29616	29734	45335	45335					0.05702305894828896
TVSKFMAIQK	10	Unmodified	_TVSKFMAIQK_					0	0	0		ENST00000467703.1_1_3:113789475-113795805:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2	ENST00000467703.1_1_3:113789475-113795805:+|nuORF	ENST00000467703.1_1_3:113789475-113795805:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.8258666992188	2	576.825909	1151.63727	-1.593	-0.00091888	1.8081	0.0010429	0.21509	0.00012407	576.8269448772214	26.933	0.16186	26.933	26.852	27.014	0					5	4	2	0	0	0	0.42408	1	8752	8752		49.536	13.089	1	96624			44767	4973	29617	29735	45336	45336					0.06751218185104335
TVSKFMAIQK	10	Unmodified	_TVSKFMAIQK_					0	0	0		ENST00000467703.1_1_3:113789475-113795805:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2	ENST00000467703.1_1_3:113789475-113795805:+|nuORF	ENST00000467703.1_1_3:113789475-113795805:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	384.8860778808594	3	384.886365	1151.63727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.071	1	27.071	26.571	27.571	0								0	0	0	0.31444	1	9645	9645		48.602	13.45	1				44768	4973	29617	29735	45337	45337					0.06751218185104335
TVSKILHHK	9	Unmodified	_TVSKILHHK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.8246459960938	2	531.824558	1061.63456	0.36831	0.00019588	-3.0082	-0.0015999	-2.6399	-0.001404	531.8226958205599	15.783	0.13001	15.783	15.728	15.858	0					9	5	2	0	0	0	0.33044	1	3516	3516		47.657	1.6851	1	75832			44769	500	29618	29736	45338	45338					0.10621130842446291
TVSKILHHK	9	Unmodified	_TVSKILHHK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.8854675292969	3	354.885464	1061.63456	0.71269	0.00025292	-1.0865	-0.00038558	-0.37381	-0.00013266	354.8850329083792	16.154	0.52588	16.154	16.021	16.546	0					24	12	4	0	0	0	0.42902	1	4330	4330		63.534	25.722	1	1612400			44770	500	29618	29736	45339	45339					0.10621130842446291
TVSKILHHK	9	Unmodified	_TVSKILHHK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.82470703125	2	531.824558	1061.63456	0.31645	0.0001683	0.40739	0.00021666	0.72384	0.00038496	531.8248538755304	15.877	0.12513	15.877	15.803	15.928	0					9	5	2	0	0	0	0.24334	1	3690	3690		56.434	13.57	1	123020			44771	500	29618	29736	45340	45340					0.10621130842446291
TVSKILHHK	9	Unmodified	_TVSKILHHK_					0	0	0		CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.8855285644531	3	354.885464	1061.63456	-0.054599	-1.9376E-05	-0.22353	-7.9326E-05	-0.27812	-9.8702E-05	354.88526798487464	16.106	0.31941	16.106	15.947	16.267	0					14	6	3	0	0	0	0.24095	1	4378	4378		82.75	31.558	1	1127100			44772	500	29618	29736	45341	45341					0.10621130842446291
TVSKRGAVPT	10	Unmodified	_TVSKRGAVPT_					0	0	0		ENST00000452733.6_1_19:48972489-48972630:+|nuORF	ENST00000452733.6_1_19:48972489-48972630:+|nuORF	ENST00000452733.6_1_19:48972489-48972630:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2985534667969	2	508.298373	1014.58219	1.3156	0.00066871	-1.1761	-0.00059783	0.13945	7.088E-05	508.2977971430229	19.682	0.26776	19.682	19.574	19.842	0					12	5	4	0	0	0	0.2978	1	6117	6117		67.494	12.771	1	1426900			44773	9661	29619	29737	45342	45342					0.07548547708859132
TVSLGTPVTLK	11	Unmodified	_TVSLGTPVTLK_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.56085205078125	3	372.560535	1114.65977	-0.11926	-4.4431E-05	1.2079	0.00045	1.0886	0.00040557	372.56107495833743	18.242	0.24467	18.242	18.101	18.346	0					12	6	3	0	0	0	0.55968	1	4715	4715		39.873	4.7211	1	106490	+		44774	14090	29620	29738	45343	45343					0.10703140854366211
TVSLLLDQEI	10	Unmodified	_TVSLLLDQEI_					0	0	0			REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	377.8805847167969	3	377.548295	1129.62306	0.81098	0.00030618	-3.6085	-0.0013624	-2.7975	-0.0010562	377.88082165950135	23.544	0.44463	23.544	23.401	23.846	0					29	10	4	0	0	0	0.58189	1	7855	7855		36.447	0.82846	1	852450	+		44775	21083	29621	29739	45344	45344					0.06342844237792633
TVSPFAVQK	9	Unmodified	_TVSPFAVQK_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;DHX57|p.N296Mfs*39|1|0.37|ENSG00000163214|chr2:38861523-38861523|T/-|frameshift_variant;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.L732Wfs*7|2|0.33|ENSG00000163214|chr2:38847043-38847043|A/-|frameshift_variant	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7766418457031	2	488.776742	975.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.089	1	30.089	29.589	30.589	0								0	0	0	0.27939	1	11211	11211		39.253	5.7372	1				44776	5538	29622	29740	45345	45345					0.05018357931567152
TVSQGLKLK	9	Unmodified	_TVSQGLKLK_					0	0	0			REV__ARF6|p.Y31H|1|0.4|ENSG00000165527|chr14:49893827-49893827|T/C|missense_variant	REV__ARF6|p.Y31H|1|0.4|ENSG00000165527|chr14:49893827-49893827|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	325.206298828125	3	325.206203	972.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.544	1	13.544	13.044	14.044	0								0	0	0	0.36609	1	3168	3168		21.686	2.5822	1		+		44777	12192	29623	29741	45346	45346					0.10938619856983678
TVSQLLSSLG	10	Unmodified	_TVSQLLSSLG_					0	0	0			REV__RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant	REV__RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7853698730469	2	502.784764	1003.55498	-0.048356	-2.4313E-05	-0.31595	-0.00015885	-0.36431	-0.00018317	502.7847358961354	30.163	0.10888	30.163	30.084	30.193	0					7	4	2	0	0	0	0.31613	1	9567	9567		65.465	1.9315	1	87202	+		44778	15862	29624	29742	45347	45347					0.05334019377835375
TVSRSIGAL	9	Unmodified	_TVSRSIGAL_					0	0	0			REV__DUSP6|p.V303A|1|0.2|ENSG00000139318|chr12:89349492-89349492|A/G|missense_variant	REV__DUSP6|p.V303A|1|0.2|ENSG00000139318|chr12:89349492-89349492|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.2664489746094	2	452.266542	902.51853	0.67111	0.00030352	-3.7045	-0.0016754	-3.0334	-0.0013719	452.2650239872309	18.97	0.15855	18.97	18.896	19.055	0					10	4	3	0	0	0	0.1115	1	5655	5655		76.774	0	1	457020	+		44779	12750	29625	29743	45348	45348					0.06337187271753919
TVSSLAIRK	9	Unmodified	_TVSSLAIRK_					0	0	0		nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	325.5379638671875	3	325.537953	973.59203	-0.024443	-7.9571E-06	0.46637	0.00015182	0.44193	0.00014386	325.53812549273226	21.617	0.15615	21.617	21.529	21.685	0					8	4	2	0	0	0	0.42902	1	6290	6290		39.253	7.723	1	70822			44780	1778	29626	29744	45349	45349					0.10417735714224818
TVSSVNEAF	9	Unmodified	_TVSSVNEAF_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2320251464844	2	477.232364	952.450176	0.39317	0.00018764	0.54693	0.00026101	0.94011	0.00044865	477.2319136428135	36.639	0.3051	36.639	36.38	36.685	0					19	8	4	0	0	0	0.1424	1	13842	13842		69.628	9.5094	1	654770			44781	4049	29627	29745	45350	45350					-0.02795102098764346
TVSSVNEAF	9	Unmodified	_TVSSVNEAF_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2322998046875	2	477.232364	952.450176	0.63961	0.00030524	-0.45615	-0.00021769	0.18347	8.7556E-05	477.2318880295016	36.603	0.11734	36.603	36.532	36.649	0					5	3	2	0	0	0	0.1424	1	14277	14277		69.628	3.1983	1	197910			44782	4049	29627	29745	45351	45351					-0.02795102098764346
TVSSVNEAF	9	Unmodified	_TVSSVNEAF_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2319641113281	2	477.232364	952.450176	-0.63712	-0.00030405	-0.18257	-8.7129E-05	-0.81969	-0.00039118	477.23231311990696	36.588	0.26515	36.588	36.479	36.744	0					7	5	2	0	0	0	0.13267	1	14244	14244		71.877	15.156	1	485280			44783	4049	29627	29745	45352	45352					-0.02795102098764346
TVSTYVRLN	9	Unmodified	_TVSTYVRLN_					0	0	0			REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7904663085938	2	526.790381	1051.56621	0.10242	5.3951E-05	0.32961	0.00017364	0.43203	0.00022759	526.7904850056167	29.848	0.88713	29.848	29.723	30.61	0					69	22	5	0	0	0	0.22377	1	10858	10858		58.782	2.0609	1	41603000	+		44784	16549	29628	29746	45353	45353					0.042488414719628054
TVSVKLAEM	9	Unmodified	_TVSVKLAEM_					0	0	0			REV__ENST00000282382.8_2_5:114915371-114915443:-|nuORF	REV__ENST00000282382.8_2_5:114915371-114915443:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2711181640625	2	489.270435	976.526318	-0.71502	-0.00034984	0.89985	0.00044027	0.18483	9.043E-05	489.2709362512427	30.571	0.33825	30.571	30.432	30.77	0					11	7	2	0	0	0	0.33044	1	11415	11415		47.657	6.8792	1	94571	+		44785	18134	29629	29747	45354	45354					0.03711578477020794
TVSVPFRVEE	10	Unmodified	_TVSVPFRVEE_					0	0	0			REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	388.2080993652344	3	388.208273	1161.60299	-2.1863	-0.00084873	2.1897	0.00085006	0.0034422	1.3363E-06	388.20905458818527	23.244	0.41042	23.244	23.064	23.474	0					13	9	2	0	0	0	0.56063	1	7075	7075		38.754	2.436	1	202560	+		44786	16460	29630	29748	45355	45355					0.028650932978735
TVTAAHIKK	9	Unmodified	_TVTAAHIKK_					0	0	0		ENST00000515517.1_1_5:14741839-14746068:-|nuORF;ENST00000503939.5_1_5:14741448-14751330:-|nuORF;nc|ENSG00000154122|Q9HCJ1-2|ANKH;ENSG00000154122|ENST00000284268|ANKH	ENST00000515517.1_1_5:14741839-14746068:-|nuORF	ENST00000515517.1_1_5:14741839-14746068:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.79718017578125	2	484.798009	967.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.87	1	14.87	14.37	15.37	0								0	0	0	0.17378	1	3133	3133		54.776	20.604	1				44787	5077	29631	29749	45356	45356					0.09637753059791976
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.8163757324219	2	493.815867	985.617182	-0.082358	-4.067E-05	0.20042	9.8969E-05	0.11806	5.83E-05	493.81591534947455	36.064	0.31691	36.064	35.956	36.273	0					32	15	4	0	0	0	0.073657	1	11809	11809		90.601	15.558	1	557660			44788	6746;10981	29632	29750	45357	45357					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.31817626953125	2	493.815867	985.617182	3.4427	0.0017001	-2.4373	-0.0012036	1.0054	0.00049648	493.814653754934	36.102	0.18291	36.102	36.031	36.214	0					13	7	2	0	0	0	0.12278	1	12215	12215		77.318	5.4401	1	141530			44789	6746;10981	29632	29750	45358	45358					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.81573486328125	2	493.815867	985.617182	-1.2694	-0.00062686	1.0158	0.0005016	-0.25366	-0.00012526	493.81636333548835	36.107	0.27966	36.107	36.005	36.285	0					27	12	3	0	0	0	0.18505	1	12208	12208		75.043	2.1641	1	380000			44790	6746;10981	29632	29750	45359	45359					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.8154602050781	2	493.815867	985.617182	-0.048581	-2.399E-05	-0.27655	-0.00013656	-0.32513	-0.00016055	493.81569076640085	36.326	0.51553	36.326	36.214	36.729	0					30	14	3	0	0	0	0.073657	1	14118	14118		90.601	11.15	1	1269700			44791	6746;10981	29632	29750	45360	45360					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8164367675781	2	493.815867	985.617182	0.26213	0.00012944	0.37171	0.00018356	0.63384	0.000313	493.81607216019864	36.086	0.34172	36.086	35.99	36.331	0					23	12	3	0	0	0	0.061298	1	12888	12888		95.815	21.56	1	311210			44792	6746;10981	29632	29750	45361	45361					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8165283203125	2	493.815867	985.617182	0.031068	1.5342E-05	0.066873	3.3023E-05	0.097941	4.8365E-05	493.81587392137084	36.091	0.31084	36.091	36.01	36.321	0					30	11	4	0	0	0	0.13907	1	12885	12885		72.879	1.0018	1	516530			44793	6746;10981	29632	29750	45362	45362					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.8153991699219	2	493.815867	985.617182	-0.62528	-0.00030877	0.020867	1.0304E-05	-0.60441	-0.00029847	493.81579714134597	36.241	0.61161	36.241	36.132	36.744	0					31	12	4	0	0	0	0.022698	1	14050	14050		124.08	8.5861	1	3216500			44794	6746;10981	29632	29750	45363	45363					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K;ENST00000593062.5_1_19:39109833-39121488:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.8157043457031	2	493.815867	985.617182	0.88652	0.00043778	-1.1259	-0.00055599	-0.23938	-0.00011821	493.815211549912	36.273	0.46384	36.273	36.115	36.579	0					26	9	4	0	0	0	0.013298	1	14066	14066		141.52	15.706	1	4768200			44795	6746;10981	29632	29750	45364	45364					0.12379790516820321
TVTAVSVLL	9	Unmodified	_TVTAVSVLL_					0	0	0		nc|ENSG00000131650|Q8NCW0-5|KREMEN2;nc|ENSG00000131650|Q8NCW0-2|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	nc|ENSG00000131650|Q8NCW0-5|KREMEN2	nc|ENSG00000131650|Q8NCW0-5|KREMEN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.78192138671875	2	451.781493	901.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.065	1	41.065	40.565	41.565	0								0	0	0	0.31623	1	15616	15616		31.955	0	1				44796	3730	29633	29751	45365	45365					0.09372126217101595
TVTCFMTI	8	Oxidation (M)	_TVTCFM(Oxidation (M))TI_		TVTCFM(1)TI		TVTCFM(71)TI	0	0	1		ENST00000519493.1_1_8:19690706-19694700:+|nuORF	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2166748046875	2	466.216814	930.419076	-0.43801	-0.00020421	0.20759	9.6783E-05	-0.23041	-0.00010742	466.2167537006218	30.608	0.27713	30.608	30.494	30.771	0					17	11	2	0	0	0	0.39542	1	9768	9768		71.378	11.084	1	71051			44797	10288	29634	29752	45366	45366		409			-0.04891714728853458
TVTCFMTI	8	Oxidation (M)	_TVTCFM(Oxidation (M))TI_		TVTCFM(1)TI		TVTCFM(63)TI	0	0	1		ENST00000519493.1_1_8:19690706-19694700:+|nuORF	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2170715332031	2	466.216814	930.419076	-0.67025	-0.00031248	1.0718	0.0004997	0.40157	0.00018722	466.21720849250806	30.873	0.26903	30.873	30.73	30.999	0					11	6	3	0	0	0	0.4723	1	11204	11204		62.978	10.679	1	393280			44798	10288	29634	29752	45367	45367		409			-0.04891714728853458
TVTCSNIIY	9	Unmodified	_TVTCSNIIY_					0	0	0			REV__tr|U7SVJ4|U7SVJ4_FUSNUMiaB-liketRNAmodifyingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01249PE=4SV=1	REV__tr|U7SVJ4|U7SVJ4_FUSNUMiaB-liketRNAmodifyingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01249PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2511291503906	2	507.252243	1012.48993	-0.17389	-8.8204E-05	-3.0668	-0.0015557	-3.2407	-0.0016439	507.25040396982	32.25	1.2236	32.25	31.718	32.941	0					46	24	3	0	0	0	0.39215	1	12239	12239		42.396	1.8235	1	133210	+		44799	21994	29635	29753	45368	45368					-0.015812984196941215
TVTEKKIR	8	Unmodified	_TVTEKKIR_					0	0	0			REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	325.5381164550781	3	325.537953	973.59203	0.37203	0.00012111	-0.1557	-5.0686E-05	0.21633	7.0423E-05	325.5379991548619	21.517	0.11492	21.517	21.438	21.553	0					9	5	2	0	0	0	0.72381	1	5939	5939		30.504	1.3336	1	102990	+		44800	19606	29636	29754	45369	45369					0.10417735714236187
TVTEKKIR	8	Unmodified	_TVTEKKIR_					0	0	0			REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	325.5378723144531	3	325.537953	973.59203	0.0087771	2.8573E-06	0.09618	3.131E-05	0.10496	3.4168E-05	325.53787659353674	21.747	0.17021	21.747	21.636	21.807	0					7	3	3	0	0	0	0.64144	1	7137	7137		42.396	6.7778	1	278380	+		44801	19606	29636	29754	45370	45370					0.10417735714236187
TVTEVLLKY	9	Unmodified	_TVTEVLLKY_					0	0	0		ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.313720703125	2	533.313158	1064.61176	0.43882	0.00023403	-0.094114	-5.0192E-05	0.34471	0.00018384	533.3132900699463	42.715	0.13511	42.715	42.653	42.788	0					12	8	2	0	0	0	0.12834	1	13554	13554		66.429	0	1	47316			44802	1732	29637	29755	45371	45371					0.08204066934331422
TVTEVLLKY	9	Unmodified	_TVTEVLLKY_					0	0	0		ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.3134155273438	2	533.313158	1064.61176	0.13809	7.3643E-05	0.57002	0.000304	0.70811	0.00037764	533.3134293821635	42.97	0.2792	42.97	42.874	43.153	0					25	14	2	0	0	0	0.12834	1	16242	16242		76.774	20.053	1	513570			44803	1732	29637	29755	45372	45372					0.08204066934331422
TVTEVLLKY	9	Unmodified	_TVTEVLLKY_					0	0	0		ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.3139038085938	2	533.313158	1064.61176	1.7387	0.00092727	-0.59832	-0.00031909	1.1404	0.00060818	533.3127166850466	42.973	0.26766	42.973	42.869	43.137	0					31	13	3	0	0	0	0.076532	1	16819	16819		90.37	44.418	1	584380			44804	1732	29637	29755	45373	45373					0.08204066934331422
TVTEVLLKY	9	Unmodified	_TVTEVLLKY_					0	0	0		ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.3133544921875	2	533.313158	1064.61176	1.7864	0.00095272	-0.56582	-0.00030176	1.2206	0.00065097	533.3128342589312	42.956	0.26986	42.956	42.812	43.082	0					23	8	4	0	0	0	0.54081	1	17130	17130		27.882	4.8398	1	705190			44805	1732	29637	29755	45374	45374					0.08204066934331422
TVTFSVSTK	9	Unmodified	_TVTFSVSTK_					0	0	0			REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.266357421875	2	485.266207	968.517862	0.84531	0.0004102	-1.1311	-0.00054887	-0.28575	-0.00013867	485.26579314801654	31.267	0.55681	31.267	31.11	31.667	0					35	11	4	0	0	0	0.13267	1	11656	11656		71.877	2.2498	1	24973000	+		44806	12774	29638	29756	45375	45375					0.03234347832062667
TVTGAAVHAF	10	Unmodified	_TVTGAAVHAF_					0	0	0		ENST00000378169.7_1_1:5965468-6021937:-|nuORF;ENST00000478423.6_1_1:5965468-6029316:-|nuORF	ENST00000378169.7_1_1:5965468-6021937:-|nuORF	ENST00000378169.7_1_1:5965468-6021937:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.25677490234375	2	487.258717	972.50288	-2.9113	-0.0014185	-0.88184	-0.00042969	-3.7931	-0.0018482	487.258237288217	19.445	0.10643	19.445	19.386	19.492	0					4	2	2	0	0	0	0.31306	1	5291	5291		65.803	16.362	1	71727			44807	9064	29639	29757	45376	45376					0.015529007547115725
TVTGETGVSI	10	Unmodified	_TVTGETGVSI_					0	0	0			REV__CTTNBP2|p.V657Sfs*12|1|0.36|ENSG00000077063|chr7:117791230-117791230|G/-|frameshift_variant	REV__CTTNBP2|p.V657Sfs*12|1|0.36|ENSG00000077063|chr7:117791230-117791230|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.25311279296875	2	482.253297	962.492041	-2.9211	-0.0014087	2.4763	0.0011942	-0.44476	-0.00021449	482.25434966344403	30.9	0.31718	30.9	30.753	31.07	0					11	8	2	0	0	0	0.30737	1	10565	10565		66.429	7.6473	1	176620	+		44808	12650	29640	29758	45377	45377					0.009294535897652167
TVTIFVAGV	9	Unmodified	_TVTIFVAGV_					0	0	0		nc|ENSG00000087088|Q07812-6|BAX;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-7|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENST00000513545.5_1_19:49458896-49464890:+|nuORF;ENSG00000087088|ENST00000345358|BAX	nc|ENSG00000087088|Q07812-6|BAX	nc|ENSG00000087088|Q07812-6|BAX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.768310546875	2	453.768386	905.522219	0.72107	0.0003272	-1.0391	-0.00047152	-0.31804	-0.00014432	453.7679901518502	38.865	0.13609	38.865	38.791	38.928	0					8	5	2	0	0	0	0.11118	1	15259	15259		76.847	0.072494	1	71493			44809	1759	29641	29759	45378	45378					0.0656785704561571
TVTINYVAV	9	Unmodified	_TVTINYVAV_					0	0	0			REV__PCDHAC2|p.Y622Lfs*8|1|0.23|ENSG00000243232|chr5:140968624-140968625|-/T|frameshift_variant	REV__PCDHAC2|p.Y622Lfs*8|1|0.23|ENSG00000243232|chr5:140968624-140968625|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2766418457031	2	490.276575	978.538597	-0.069357	-3.4004E-05	-0.32122	-0.00015749	-0.39057	-0.00019149	490.27644419613193	36.599	0.50622	36.599	36.254	36.76	0					23	14	2	0	0	0	0.22377	1	14233	14233		58.782	3.2778	1	251990	+		44810	17699	29642	29760	45379	45379					0.04846938211710494
TVTITSNV	8	Unmodified	_TVTITSNV_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	417.7318420410156	2	417.732	833.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.383	1	31.383	30.883	31.883	0								0	0	0	1.7419	1	11829	11829		47.916	7.343	1		+		44811	15343	29643	29761	45380	45380					0.0260610325219659
TVTKPVGGDK	10	Unmodified	_TVTKPVGGDK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant;ENST00000445338.1_1_10:13633913-13634195:-|nuORF;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2846984863281	2	501.284931	1000.55531	0.60144	0.00030149	-0.26336	-0.00013202	0.33807	0.00016947	501.2846988751217	14.842	0.10099	14.842	14.79	14.891	0					8	2	4	0	0	0	0.057264	1	3715	3715		106.88	19.126	1	371690			44812	1792	29644	29762	45381	45381					0.05505439097669296
TVTKPVGGDK	10	Unmodified	_TVTKPVGGDK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant;ENST00000445338.1_1_10:13633913-13634195:-|nuORF;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.7866516113281	2	501.284931	1000.55531	3.4876	0.0017483	-2.5266	-0.0012665	0.96107	0.00048177	501.28358087560525	14.567	0.10065	14.567	14.516	14.617	0					7	4	2	0	0	0	0.48255	1	3171	3171		47.228	2.8505	1	103280			44813	1792	29644	29762	45382	45382					0.05505439097669296
TVTKPVGGDK	10	Unmodified	_TVTKPVGGDK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant;ENST00000445338.1_1_10:13633913-13634195:-|nuORF;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2848205566406	2	501.284931	1000.55531	0.030923	1.5501E-05	-0.23549	-0.00011805	-0.20456	-0.00010254	501.2848052801062	14.806	0.2628	14.806	14.748	15.011	0					8	5	3	0	0	0	0.09653	1	3929	3929		96.034	2.0272	1	1017300			44814	1792	29644	29762	45383	45383					0.05505439097669296
TVTKPVGGDK	10	Unmodified	_TVTKPVGGDK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant;ENST00000445338.1_1_10:13633913-13634195:-|nuORF;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2852478027344	2	501.284931	1000.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.6	1	14.6	14.1	15.1	0								0	0	0	0.22047	1	3122	3122		61.691	6.915	1				44815	1792	29644	29762	45384	45384					0.05505439097669296
TVTKVLKPI	9	Unmodified	_TVTKVLKPI_					0	0	0			REV__ENST00000597384.1_1_19:7571970-7578873:+|nuORF	REV__ENST00000597384.1_1_19:7571970-7578873:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.5583801269531	3	333.558466	997.653567	0.52061	0.00017365	-0.80906	-0.00026987	-0.28845	-9.6214E-05	333.55820020158586	34.888	0.27212	34.888	34.761	35.033	0					16	7	3	0	0	0	0.55282	1	13024	13024		42.396	16.822	1	202130	+		44816	20575	29645	29763	45385	45385					0.1546466741350514
TVTKVLKPI	9	Unmodified	_TVTKVLKPI_					0	0	0			REV__ENST00000597384.1_1_19:7571970-7578873:+|nuORF	REV__ENST00000597384.1_1_19:7571970-7578873:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.558349609375	3	333.558466	997.653567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.837	1	34.837	34.337	35.337	0								0	0	0	0.37146	1	13459	13459		26.693	0	1		+		44817	20575	29645	29763	45386	45386					0.1546466741350514
TVTLTVAV	8	Unmodified	_TVTLTVAV_					0	0	0		ENSG00000253767|ENST00000398604|PCDHGA8;PCDHGA8|p.N788Kfs*2|1|0.27|ENSG00000253767|chr5:141395171-141395172|-/A|frameshift_variant;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;PCDHGA1|p.Q772Sfs*79|1|0.05|ENSG00000204956|chr5:141332994-141332994|C/-|frameshift_variant;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000204956|ENST00000517417|PCDHGA1;PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant;ENSG00000253159|ENST00000252085|PCDHGA12;PCDHGA8|p.L712Sfs*33|1|0.15|ENSG00000253767|chr5:141394944-141394945|-/T|frameshift_variant;ENSG00000081853|ENST00000394576|PCDHGA2;PCDHGA2|p.K788Rfs*64|1|0.06|ENSG00000081853|chr5:141341330-141341330|A/-|frameshift_variant;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;PCDHGA2|p.A656T|1|0.24|ENSG00000081853|chr5:141340937-141340937|G/A|missense_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant;PCDHGA11|p.R724Afs*19|1|0.34|ENSG00000253873|chr5:141423397-141423397|C/-|frameshift_variant;PCDHGA10|p.S671I|1|0.3|ENSG00000253846|chr5:141415187-141415187|G/T|missense_variant;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	ENSG00000253767|ENST00000398604|PCDHGA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.24725341796875	2	402.247286	802.48002	0.94781	0.00038125	-1.1793	-0.00047436	-0.23147	-9.3108E-05	402.24678623234854	40.39	0.23857	40.39	40.307	40.545	0					13	9	2	0	0	0	0.41952	1	15389	15389		68.485	0	1	103120			44818	8002;8056	29646	29764	45387	45387					0.0708788163723284
TVTLTVAV	8	Unmodified	_TVTLTVAV_					0	0	0		ENSG00000253767|ENST00000398604|PCDHGA8;PCDHGA8|p.N788Kfs*2|1|0.27|ENSG00000253767|chr5:141395171-141395172|-/A|frameshift_variant;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;PCDHGA1|p.Q772Sfs*79|1|0.05|ENSG00000204956|chr5:141332994-141332994|C/-|frameshift_variant;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000204956|ENST00000517417|PCDHGA1;PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant;ENSG00000253159|ENST00000252085|PCDHGA12;PCDHGA8|p.L712Sfs*33|1|0.15|ENSG00000253767|chr5:141394944-141394945|-/T|frameshift_variant;ENSG00000081853|ENST00000394576|PCDHGA2;PCDHGA2|p.K788Rfs*64|1|0.06|ENSG00000081853|chr5:141341330-141341330|A/-|frameshift_variant;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;PCDHGA2|p.A656T|1|0.24|ENSG00000081853|chr5:141340937-141340937|G/A|missense_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant;PCDHGA11|p.R724Afs*19|1|0.34|ENSG00000253873|chr5:141423397-141423397|C/-|frameshift_variant;PCDHGA10|p.S671I|1|0.3|ENSG00000253846|chr5:141415187-141415187|G/T|missense_variant;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	ENSG00000253767|ENST00000398604|PCDHGA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.2475891113281	2	402.247286	802.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.395	1	40.395	39.895	40.895	0								0	0	0	1.7419	1	15397	15397		83.287	11.909	1				44819	8002;8056	29646	29764	45388	45388					0.0708788163723284
TVTLTVAV	8	Unmodified	_TVTLTVAV_					0	0	0		ENSG00000253767|ENST00000398604|PCDHGA8;PCDHGA8|p.N788Kfs*2|1|0.27|ENSG00000253767|chr5:141395171-141395172|-/A|frameshift_variant;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;PCDHGA1|p.Q772Sfs*79|1|0.05|ENSG00000204956|chr5:141332994-141332994|C/-|frameshift_variant;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000204956|ENST00000517417|PCDHGA1;PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant;ENSG00000253159|ENST00000252085|PCDHGA12;PCDHGA8|p.L712Sfs*33|1|0.15|ENSG00000253767|chr5:141394944-141394945|-/T|frameshift_variant;ENSG00000081853|ENST00000394576|PCDHGA2;PCDHGA2|p.K788Rfs*64|1|0.06|ENSG00000081853|chr5:141341330-141341330|A/-|frameshift_variant;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;PCDHGA2|p.A656T|1|0.24|ENSG00000081853|chr5:141340937-141340937|G/A|missense_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant;PCDHGA11|p.R724Afs*19|1|0.34|ENSG00000253873|chr5:141423397-141423397|C/-|frameshift_variant;PCDHGA10|p.S671I|1|0.3|ENSG00000253846|chr5:141415187-141415187|G/T|missense_variant;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	ENSG00000253767|ENST00000398604|PCDHGA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.2474365234375	2	402.247286	802.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.322	1	40.322	39.822	40.822	0								0	0	0	1.7419	1	16000	16000		79.939	11.455	1				44820	8002;8056	29646	29764	45389	45389					0.0708788163723284
TVTMATAAVV	10	Unmodified	_TVTMATAAVV_					0	0	0			REV__tr|U7T0W6|U7T0W6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00716PE=4SV=1	REV__tr|U7T0W6|U7T0W6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00716PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.26275634765625	2	482.26261	962.510668	0.046197	2.2279E-05	0.13611	6.564E-05	0.18231	8.792E-05	482.26269238083876	30.11	0.2222	30.11	29.98	30.202	0					14	8	3	0	0	0	0.58896	1	9556	9556		35.618	1.6967	1	134930	+		44821	22068	29647	29765	45390	45390					0.027912919599771158
TVTNKSLKQ	9	Unmodified	_TVTNKSLKQ_					0	0	0			REV__SLITRK6|p.E556Gfs*7|1|0.22|ENSG00000184564|chr13:85794844-85794845|-/T|frameshift_variant	REV__SLITRK6|p.E556Gfs*7|1|0.22|ENSG00000184564|chr13:85794844-85794845|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	340.2015075683594	3	340.201229	1017.58186	0.37311	0.00012693	-0.3113	-0.00010591	0.061809	2.1028E-05	340.2011758965522	12.505	0.081732	12.505	12.457	12.539	0					9	4	3	0	0	0	0.56424	1	2376	2376		20.03	4.1098	1	183230	+		44822	16989	29648	29766	45391	45391					0.07377127988991106
TVTQIPLTQ	9	Unmodified	_TVTQIPLTQ_					0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.78729248046875	2	500.787307	999.560061	0.66288	0.00033196	-0.60517	-0.00030306	0.05771	2.89E-05	500.786997008706	25.43	0.39398	25.43	25.242	25.636	0					20	9	4	0	0	0	0.24334	1	8691	8691		56.434	6.4003	1	1052100	+		44823	16053	29649	29767	45392	45392					0.060263232404167866
TVTQIPLTQ	9	Unmodified	_TVTQIPLTQ_					0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.787109375	2	500.787307	999.560061	-0.62196	-0.00031147	0.37793	0.00018926	-0.24404	-0.00012221	500.7874081170078	25.324	0.26791	25.324	25.213	25.481	0					15	5	4	0	0	0	0.13726	1	8860	8860		70.816	8.7088	1	1185900	+		44824	16053	29649	29767	45393	45393					0.060263232404167866
TVTSYVFLK	9	Unmodified	_TVTSYVFLK_					0	0	0		ENST00000417678.5_1_2:220079697-220081182:-|nuORF;ABCB6|p.G318Vfs*9|1|0.69|ENSG00000115657|chr2:219216381-219216381|C/-|frameshift_variant;ENST00000446716.5_1_2:220075515-220081188:-|nuORF;ABCB6|p.G319Wfs*115|1|0.24|ENSG00000115657|chr2:219216380-219216381|-/C|frameshift_variant;nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.300537109375	2	529.30005	1056.58555	0.89795	0.00047529	0.21663	0.00011466	1.1146	0.00058995	529.3001769480014	40.354	0.13014	40.354	40.279	40.409	0					7	5	2	0	0	0	0.087861	1	15903	15903		82.241	82.241	1	54653			44825	14	29650	29768	45394	45394					0.059517977628502194
TVTSYVFLK	9	Unmodified	_TVTSYVFLK_					0	0	0		ENST00000417678.5_1_2:220079697-220081182:-|nuORF;ABCB6|p.G318Vfs*9|1|0.69|ENSG00000115657|chr2:219216381-219216381|C/-|frameshift_variant;ENST00000446716.5_1_2:220075515-220081188:-|nuORF;ABCB6|p.G319Wfs*115|1|0.24|ENSG00000115657|chr2:219216380-219216381|-/C|frameshift_variant;nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.3006591796875	2	529.30005	1056.58555	0.73291	0.00038793	0.36307	0.00019217	1.096	0.0005801	529.3000079983217	40.316	0.1955	40.316	40.229	40.424	0					9	4	3	0	0	0	0.27249	1	15987	15987		52.937	18.764	1	254390			44826	14	29650	29768	45395	45395					0.059517977628502194
TVTTGVMGAV	10	Oxidation (M)	_TVTTGVM(Oxidation (M))GAV_		TVTTGVM(1)GAV		TVTTGVM(61)GAV	0	0	1		PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant;PLIN4|p.G1001Afs*9|1|0.16|ENSG00000167676|chr19:4510916-4510916|C/-|frameshift_variant;ENSG00000167676|ENST00000301286|PLIN4;PLIN4|p.G374Afs*35|1|0.53|ENSG00000167676|chr19:4512797-4512797|C/-|frameshift_variant	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.24395751953125	2	476.244418	950.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.696	1	27.696	27.196	28.196	0								0	0	0	0.22634	1	9942	9942		60.972	8.0352	1				44827	6018	29651	29769	45396	45396		246			-0.0029358493673043995
TVTTNSLY	8	Unmodified	_TVTTNSLY_					0	0	0			REV__ENSG00000226761|ENST00000533467|TAS2R46	REV__ENSG00000226761|ENST00000533467|TAS2R46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.72918701171875	2	449.729458	897.444362	-0.39883	-0.00017936	-0.056852	-2.5568E-05	-0.45568	-0.00020493	449.72900508545075	40.367	0.25246	40.367	40.268	40.52	0					6	5	2	0	0	0	0.68754	1	16035	16035		35.201	1.6851	1	45928	+		44828	17634	29652	29770	45397	45397					-0.008462006104309694
TVTTTLKN	8	Unmodified	_TVTTTLKN_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2530212402344	2	439.2531	876.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.652	1	17.652	17.152	18.152	0								0	0	0	1.7419	1	4251	4251		21.96	0	1				44829	3463	29653	29771	45398	45398					0.04846078660580133
TVTVLRDKN	9	Unmodified	_TVTVLRDKN_					0	0	0			REV__ENSG00000198965|ENST00000641067|OR10R2	REV__ENSG00000198965|ENST00000641067|OR10R2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3038330078125	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.223	1	49.223	48.723	49.723	0								0	0	0	0.36609	1	16243	16243		20.947	0.4651	1		+		44830	17454	29654	29772	45399	45399					0.07224530363305348
TVTVNLVQ	8	Unmodified	_TVTVNLVQ_					0	0	0			REV__ENSG00000126231|ENST00000375547|PROZ	REV__ENSG00000126231|ENST00000375547|PROZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.25543212890625	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.526	1	26.526	26.026	27.026	0								0	0	0	1.7419	1	8073	8073		34.173	1.3601	1		+		44831	14460	29655	29773	45400	45400					0.05538382523184282
TVVAAVGPK	9	Unmodified	_TVVAAVGPK_					0	0	0		ENST00000590836.1_1_17:41132593-41133163:+|nuORF;RUNDC1|p.K513Qfs*16|1|0.27|ENSG00000198863|chr17:42991405-42991406|-/C|frameshift_variant;RUNDC1|p.F530Lfs*9|1|0.11|ENSG00000198863|chr17:42991461-42991461|T/-|frameshift_variant;nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	ENST00000590836.1_1_17:41132593-41133163:+|nuORF	ENST00000590836.1_1_17:41132593-41133163:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.2613220214844	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.811	1	22.811	22.311	23.311	0								0	0	0	0.19749	1	6508	6508		51.335	5.3835	1				44832	7627	29656	29774	45401	45401					0.08026990248424681
TVVAAVGPK	9	Unmodified	_TVVAAVGPK_					0	0	0		ENST00000590836.1_1_17:41132593-41133163:+|nuORF;RUNDC1|p.K513Qfs*16|1|0.27|ENSG00000198863|chr17:42991405-42991406|-/C|frameshift_variant;RUNDC1|p.F530Lfs*9|1|0.11|ENSG00000198863|chr17:42991461-42991461|T/-|frameshift_variant;nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	ENST00000590836.1_1_17:41132593-41133163:+|nuORF	ENST00000590836.1_1_17:41132593-41133163:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.2606506347656	2	421.260728	840.506903	0.3995	0.00016829	-0.55556	-0.00023404	-0.15606	-6.5744E-05	421.26044518468086	23.115	0.14317	23.115	23.018	23.161	0					8	3	3	0	0	0	0.22377	1	7597	7597		58.782	18.209	1	268150			44833	7627	29656	29774	45402	45402					0.08026990248424681
TVVAVASATY	10	Unmodified	_TVVAVASATY_					0	0	0		tr|U7STD6|U7STD6_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01373PE=3SV=1	tr|U7STD6|U7STD6_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01373PE=3SV=1	tr|U7STD6|U7STD6_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01373PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.26556396484375	2	491.266207	980.517862	0.81087	0.00039835	-0.96127	-0.00047224	-0.1504	-7.3884E-05	491.2656197456441	38.075	0.23412	38.075	38.01	38.244	0					16	10	2	0	0	0	0.357	1	14449	14449		60.972	5.4677	1	89769			44834	22777	29657	29775	45403	45403					0.02682347832035248
TVVDAKTLK	9	Unmodified	_TVVDAKTLK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7972412109375	2	487.797675	973.580796	-1.2467	-0.00060812	0.46787	0.00022823	-0.7788	-0.0003799	487.79791697512155	21.017	0.13647	21.017	20.965	21.102	0					8	4	3	0	0	0	0.46194	1	5980	5980		36.447	0	1	99008			44835	1615	29658	29776	45404	45404					0.09294913620090028
TVVDCPVCK	9	Unmodified	_TVVDCPVCK_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2350158691406	2	482.235538	962.456524	-0.61591	-0.00029701	-1.4355	-0.00069224	-2.0514	-0.00098925	482.2347489416447	30.449	0.54767	30.449	29.997	30.545	0					18	11	2	0	0	0	0.35021	1	11145	11145		45.972	1.8554	1	464670			44836	3665	29659	29777	45405	45405					-0.02620623463258198
TVVDLFFIP	9	Unmodified	_TVVDLFFIP_					0	0	0		OR4X1|p.G302Efs*3|1|0.18|ENSG00000176567|chr11:48264761-48264761|G/-|frameshift_variant;ENSG00000176567|ENST00000320048|OR4X1	OR4X1|p.G302Efs*3|1|0.18|ENSG00000176567|chr11:48264761-48264761|G/-|frameshift_variant	OR4X1|p.G302Efs*3|1|0.18|ENSG00000176567|chr11:48264761-48264761|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7949829101562	2	525.797143	1049.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.074	1	33.074	32.574	33.574	0								0	0	0	0.28164	1	11570	11570		38.806	1.647	1				44837	6614	29660	29778	45406	45406					0.056926992511762364
TVVDQTTLMKK	11	Unmodified	_TVVDQTTLMKK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.90386962890625	3	421.904084	1262.69042	1.0541	0.00044471	-1.7176	-0.00072465	-0.66351	-0.00027994	421.9034182839712	26.34	0.21746	26.34	26.234	26.451	0					9	4	3	0	0	0	0.44591	1	9308	9308		48.188	15.149	1	722630			44838	7354;23071	29661	29779	45407	45407					0.069585511771038
TVVGKEKLL	9	Unmodified	_TVVGKEKLL_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.81561279296875	2	493.815867	985.617182	-0.62515	-0.00030871	0.28022	0.00013838	-0.34494	-0.00017034	493.8159316255277	27.848	1.4659	27.848	27.56	29.026	0					84	29	4	0	0	0	0.47473	1	10331	10331		27.882	6.9353	1	1373200			44839	22615	29662	29780	45408	45408					0.12379790516808953
TVVGKEKLLE	10	Unmodified	_TVVGKEKLLE_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.56085205078125	3	372.560535	1114.65977	0.76668	0.00028563	0.14547	5.4196E-05	0.91215	0.00033983	372.56053454454104	18.413	0.56165	18.413	18.206	18.768	0					30	11	5	0	0	0	0.5155	1	5495	5495		43.651	7.3331	1	2970600			44840	22615	29663	29781	45409	45409					0.10703140854388948
TVVGVLLQT	9	Unmodified	_TVVGVLLQT_					0	0	0			REV__ENST00000511220.1_1_5:92603510-92603882:+|nuORF	REV__ENST00000511220.1_1_5:92603510-92603882:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2869567871094	2	465.286943	928.559333	-0.68228	-0.00031746	0.69265	0.00032228	0.010365	4.8227E-06	465.2874075909576	35.189	0.1644	35.189	35.104	35.268	0					7	4	2	0	0	0	0.33044	1	13184	13184		47.657	1.6851	1	102190	+		44841	19874	29664	29782	45410	45410					0.09219528591370363
TVVKLEKT	8	Unmodified	_TVVKLEKT_					0	0	0		TPM4|p.A211V|1|0.18|ENSG00000167460|chr19:16093721-16093721|C/T|missense_variant	TPM4|p.A211V|1|0.18|ENSG00000167460|chr19:16093721-16093721|C/T|missense_variant	TPM4|p.A211V|1|0.18|ENSG00000167460|chr19:16093721-16093721|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.28668212890625	2	459.286943	916.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.428	1	32.428	31.928	32.928	0								0	0	0	1.7419	1	11904	11904		23.042	0	1				44842	22560	29665	29783	45411	45411					0.09771528591375045
TVVKTVTP	8	Unmodified	_TVVKTVTP_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.7606201171875	2	422.760561	843.506569	0.99176	0.00041928	-1.2996	-0.00054942	-0.30784	-0.00013014	422.75996881976965	27.833	0.30952	27.833	27.706	28.015	0					14	7	3	0	0	0	0.41	1	9764	9764		69.628	7.5202	1	388500	+		44843	15289	29666	29784	45412	45412					0.07855570528568023
TVVLLYLIE	9	Unmodified	_TVVLLYLIE_					0	0	0			REV__L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|20|3|anti-sense	REV__L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|20|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.8855895996094	3	354.886359	1061.63725	0.43388	0.00015398	-2.7212	-0.0009657	-2.2873	-0.00081173	354.88539937079145	15.93	0.18377	15.93	15.801	15.985	0					9	7	2	0	0	0	0.55379	1	3673	3673		26.693	2.1737	1	73869	+		44844	20806	29667	29785	45413	45413					0.10889541456754159
TVVPAAPEL	9	Unmodified	_TVVPAAPEL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.7580871582031	2	448.758018	895.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.394	1	45.394	44.894	45.894	0								0	0	0	0.3304	1	16897	16897		29.15	0	1				44845	4160	29668	29786	45414	45414					0.04955266665945146
TVVPRFKKK	9	Unmodified	_TVVPRFKKK_					0	0	0		ENST00000461986.5_1_1:78183501-78187881:-|nuORF	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.2418518066406	3	368.241359	1101.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.02	1	32.02	31.52	32.52	0								0	0	0	0.3428	1	11091	11091		26.693	2.1737	1				44846	9739	29669	29787	45415	45415					0.1554658077327531
TVVPSMGTKP	10	Unmodified	_TVVPSMGTKP_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.77423095703125	2	508.775885	1015.53722	-0.080811	-4.1115E-05	-3.3358	-0.0016972	-3.4166	-0.0017383	508.7740178075922	35.594	0.27124	35.594	35.432	35.704	0					7	5	2	0	0	0	0.52275	1	13742	13742		42.864	0.46813	1	381640			44847	4562	29670	29788	45416	45416					0.030069808513189855
TVVQMLISV	9	Unmodified	_TVVQMLISV_					0	0	0		ENST00000375206.6_1_9:100008408-100053768:+|nuORF;ENST00000375204.2_1_9:100008408-100054866:+|nuORF;ENST00000527128.5_1_9:100008408-100053855:+|nuORF	ENST00000375206.6_1_9:100008408-100053768:+|nuORF	ENST00000375206.6_1_9:100008408-100053768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.28704833984375	2	495.288628	988.562703	0.70251	0.00034794	-3.8668	-0.0019152	-3.1643	-0.0015672	495.2866902509767	42.989	0.17523	42.989	42.853	43.029	0					15	9	2	0	0	0	0.11411	1	16838	16838		69.628	0	1	62973			44848	9028	29671	29789	45417	45417					0.06796455373751087
TVVRYGVDP	9	Unmodified	_TVVRYGVDP_					0	0	0			REV__ENSG00000166268|ENST00000552032|MYRFL	REV__ENSG00000166268|ENST00000552032|MYRFL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.77587890625	2	503.271824	1004.5291	1.1706	0.00058912	3.8927	0.0019591	5.0633	0.0025482	503.27371786195255	28.618	0.51678	28.618	28.343	28.86	0					17	10	3	0	0	0	0.1424	1	10369	10369		69.628	10.846	1	1037200	+		44849	16103	29672	29790	45418	45418					0.02701169926183411
TVVTPKEGI	9	Unmodified	_TVVTPKEGI_					0	0	0			REV__GABRE|p.F157Lfs*33|1|0.13|ENSG00000102287|chrX:151962515-151962515|A/-|frameshift_variant	REV__GABRE|p.F157Lfs*33|1|0.13|ENSG00000102287|chrX:151962515-151962515|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2764892578125	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.446	1	30.446	29.946	30.946	0								0	0	0	0.095784	1	10369	10369		72.879	3.2516	1		+		44850	13630	29673	29791	45419	45419					0.06502938211713172
TVVTVSKQQ	9	Unmodified	_TVVTVSKQQ_					0	0	0			REV__ENSG00000176641|ENST00000312828|RNF152	REV__ENSG00000176641|ENST00000312828|RNF152	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2847900390625	2	495.284931	988.55531	0.086437	4.2811E-05	-0.50475	-0.00025	-0.41831	-0.00020718	495.2848834501896	24.347	0.13762	24.347	24.263	24.4	0					5	3	2	0	0	0	0.35021	1	7588	7588		45.972	7.1661	1	148810	+		44851	16666	29674	29792	45420	45420					0.06057439097662609
TVWCIFVQI	9	Unmodified	_TVWCIFVQI_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7981567382812	2	554.79662	1107.57869	0.5978	0.00033165	3.1833	0.0017661	3.7811	0.0020977	554.797887756051	43.087	0.14458	43.087	43.041	43.186	0					11	7	2	0	0	0	0.10915	1	16289	16289		60.972	0	1	81727			44852	10248	29675	29793	45421	45421					0.029201616106320216
TVWGAKQI	8	Unmodified	_TVWGAKQI_					0	0	0		nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851|CASP10	nc|ENSG00000003400|Q92851-5|CASP10	nc|ENSG00000003400|Q92851-5|CASP10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7582092285156	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.172	1	25.172	24.672	25.672	0								0	0	0	1.7419	1	7796	7796		38.806	3.6054	1				44853	11410	29676	29794	45422	45422					0.0474610610565378
TVWNTVLD	8	Unmodified	_TVWNTVLD_					0	0	0			REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1	REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2466125488281	2	474.245275	946.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.091	1	29.091	28.591	29.591	0								0	0	0	1.7419	1	10352	10352		40.778	1.5253	1		+		44854	15851	29677	29795	45423	45423					0.0006179214351504925
TVWRLVPD	8	Unmodified	_TVWRLVPD_					0	0	0		ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENST00000447818.2_1_X:79828255-79829731:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.18707275390625	3	329.187032	984.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.788	1	45.788	45.288	46.288	0								0	0	0	1.7419	1	17005	17005		23.042	0	1				44855	9629	29678	29796	45424	45424					0.046377776514077595
TVYAQTLR	8	Unmodified	_TVYAQTLR_					0	0	0			REV__SLC47A1|p.T156A|1|0.3|ENSG00000142494|chr17:19549645-19549645|A/G|missense_variant	REV__SLC47A1|p.T156A|1|0.3|ENSG00000142494|chr17:19549645-19549645|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2665710449219	2	476.266542	950.51853	-0.62516	-0.00029774	0.53288	0.00025379	-0.092275	-4.3948E-05	476.26681776592824	32.329	0.21857	32.329	32.219	32.438	0					11	4	3	0	0	0	0.64144	1	12193	12193		42.396	1.618	1	248690	+		44856	21537	29679	29797	45425	45425					0.04129187271769297
TVYDRTTVL	9	Unmodified	_TVYDRTTVL_					0	0	0		MTF1|p.T228Rfs*19|1|0.17|ENSG00000188786|chr1:37838722-37838722|T/-|frameshift_variant;MTF1|p.F290Yfs*7|1|0.07|ENSG00000188786|chr1:37835200-37835201|-/GGTGTGT|frameshift_variant;MTF1|p.P462Lfs*83|1|0.39|ENSG00000188786|chr1:37822503-37822503|G/-|frameshift_variant;ENSG00000188786|ENST00000373036|MTF1	MTF1|p.T228Rfs*19|1|0.17|ENSG00000188786|chr1:37838722-37838722|T/-|frameshift_variant	MTF1|p.T228Rfs*19|1|0.17|ENSG00000188786|chr1:37838722-37838722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2905883789062	2	534.290214	1066.56587	0.52181	0.0002788	0.32995	0.00017629	0.85177	0.00045509	534.290169637701	37.451	0.19531	37.451	37.373	37.568	0					20	10	3	0	0	0	0.42902	1	12265	12265		39.253	6.4404	1	159640			44857	7272	29680	29798	45426	45426					0.03525421752101465
TVYDRTTVL	9	Unmodified	_TVYDRTTVL_					0	0	0		MTF1|p.T228Rfs*19|1|0.17|ENSG00000188786|chr1:37838722-37838722|T/-|frameshift_variant;MTF1|p.F290Yfs*7|1|0.07|ENSG00000188786|chr1:37835200-37835201|-/GGTGTGT|frameshift_variant;MTF1|p.P462Lfs*83|1|0.39|ENSG00000188786|chr1:37822503-37822503|G/-|frameshift_variant;ENSG00000188786|ENST00000373036|MTF1	MTF1|p.T228Rfs*19|1|0.17|ENSG00000188786|chr1:37838722-37838722|T/-|frameshift_variant	MTF1|p.T228Rfs*19|1|0.17|ENSG00000188786|chr1:37838722-37838722|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2901611328125	2	534.290214	1066.56587	0.29043	0.00015518	0.28335	0.00015139	0.57379	0.00030657	534.2901795427496	37.771	0.20434	37.771	37.641	37.846	0					18	6	4	0	0	0	0.087861	1	14771	14771		82.241	12.613	1	595990			44858	7272	29680	29798	45427	45427					0.03525421752101465
TVYEEMMAK	9	Oxidation (M)	_TVYEEMM(Oxidation (M))AK_		TVYEEM(0.043)M(0.957)AK		TVYEEM(-13)M(13)AK	0	0	1		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.2501220703125	2	559.248843	1116.48313	1.4298	0.00079961	0.41788	0.0002337	1.8477	0.0010333	559.2492327399721	27.434	0.10829	27.434	27.401	27.509	0					5	3	2	0	0	0	0.33044	1	8466	8466		47.657	10.498	2	59759			44859	4629	29681	29799	45428	45428		192			-0.07044979362581216
TVYEEMMAK	9	Oxidation (M)	_TVYEEMM(Oxidation (M))AK_		TVYEEM(0.033)M(0.967)AK		TVYEEM(-15)M(15)AK	0	0	1		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.248779296875	2	559.248843	1116.48313	1.7984	0.0010057	-1.255	-0.00070184	0.54342	0.00030391	559.2482326718791	28.14	0.25999	28.14	28.043	28.303	0					14	6	3	0	0	0	0.12834	1	9920	9920		72.879	25.222	2	268290			44860	4629	29681	29799	45429	45429		192			-0.07044979362581216
TVYEEMMAK	9	Oxidation (M)	_TVYEEMM(Oxidation (M))AK_		TVYEEM(0.04)M(0.96)AK		TVYEEM(-14)M(14)AK	0	0	1		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.249267578125	2	559.248843	1116.48313	1.3981	0.00078191	-0.85497	-0.00047814	0.54316	0.00030376	559.248448754717	27.62	0.16909	27.62	27.56	27.729	0					9	3	4	0	0	0	0.22837	1	9920	9920		58.23	20.418	2	298440			44861	4629	29681	29799	45430	45430		192			-0.07044979362581216
TVYEEMMAK	9	Oxidation (M)	_TVYEEMM(Oxidation (M))AK_		TVYEEM(0.049)M(0.951)AK		TVYEEM(-13)M(13)AK	0	0	1		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2490844726562	2	559.248843	1116.48313	1.4057	0.00078613	-0.83363	-0.00046621	0.57207	0.00031993	559.2483267861506	28.118	0.21838	28.118	28.01	28.228	0					10	4	3	0	0	0	0.36892	1	10163	10163		44.377	8.7589	2	342830			44862	4629	29681	29799	45431	45431		192			-0.07044979362581216
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.2517700195312	2	551.251385	1100.48822	1.5003	0.00082707	-1.7842	-0.00098355	-0.28386	-0.00015648	551.2508589892676	33.714	0.25011	33.714	33.62	33.87	0					28	10	4	0	0	0	0.023928	1	10971	10971		115.49	55.376	1	809710			44863	4629	29681	29800	45432	45432					-0.05800675499949648
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.2517700195312	2	551.251385	1100.48822	1.8286	0.001008	-1.9467	-0.0010731	-0.11811	-6.5111E-05	551.2505701567193	33.923	0.46159	33.923	33.806	34.268	0					38	12	5	0	0	0	0.020674	1	12582	12582		120.87	65.364	1	4364600			44864	4629	29681	29800	45433	45433					-0.05800675499949648
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.252685546875	2	551.251385	1100.48822	4.5982	0.0025348	-3.4997	-0.0019292	1.0985	0.00060555	551.2499767178056	33.756	0.22399	33.756	33.678	33.902	0					20	8	4	0	0	0	0.10915	1	11333	11333		77.318	27.782	1	184690			44865	4629	29681	29800	45434	45434					-0.05800675499949648
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.2523803710938	2	551.251385	1100.48822	0.44219	0.00024376	-0.57994	-0.0003197	-0.13776	-7.5938E-05	551.2513910365827	33.927	0.43424	33.927	33.807	34.241	0					27	10	4	0	0	0	0.04067	1	13019	13019		98.582	45.231	1	1782900			44866	4629	29681	29800	45435	45435					-0.05800675499949648
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.251953125	2	551.251385	1100.48822	1.8294	0.0010085	-1.5239	-0.00084005	0.30548	0.0001684	551.2508263947925	33.728	0.29819	33.728	33.651	33.949	0					19	8	4	0	0	0	0.026538	1	11860	11860		112.41	64.495	1	556670			44867	4629	29681	29800	45436	45436					-0.05800675499949648
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.2522583007812	2	551.251385	1100.48822	1.1497	0.00063377	-1.0622	-0.00058555	0.087471	4.8219E-05	551.251100638598	33.738	0.29822	33.738	33.638	33.936	0					23	8	4	0	0	0	0.13267	1	11857	11857		71.877	18.526	1	334130			44868	4629	29681	29800	45437	45437					-0.05800675499949648
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2515869140625	2	551.251385	1100.48822	0.7031	0.00038759	-0.51021	-0.00028126	0.19289	0.00010633	551.2514073951539	33.915	0.62701	33.915	33.782	34.409	0					40	13	5	0	0	0	0.0080613	1	12927	12927		145.16	86.926	1	5098500			44869	4629	29681	29800	45438	45438					-0.05800675499949648
TVYEEMMAK	9	Unmodified	_TVYEEMMAK_					0	0	0		ENSG00000144659|ENST00000650617|SLC25A38;SLC25A38|p.G301V|1|0.09|ENSG00000144659|chr3:39396507-39396507|G/T|missense_variant	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.2516479492188	2	551.251385	1100.48822	1.8171	0.0010017	-1.2256	-0.0006756	0.59153	0.00032608	551.250926921976	33.9	0.39393	33.9	33.802	34.196	0					24	8	4	0	0	0	0.013878	1	12923	12923		132.76	58.783	1	3621800			44870	4629	29681	29800	45439	45439					-0.05800675499949648
TVYLVVAVA	9	Unmodified	_TVYLVVAVA_					0	0	0		PCDHB12|p.L694V|1|0.14|ENSG00000120328|chr5:141210987-141210987|T/G|missense_variant	PCDHB12|p.L694V|1|0.14|ENSG00000120328|chr5:141210987-141210987|T/G|missense_variant	PCDHB12|p.L694V|1|0.14|ENSG00000120328|chr5:141210987-141210987|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.7841491699219	2	467.784036	933.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.485	1	41.485	40.985	41.985	0								0	0	0	0.29985	1	15763	15763		35.201	0	1				44871	11905	29682	29801	45440	45440					0.08408430079703066
TVYRGLVQK	9	Unmodified	_TVYRGLVQK_					0	0	0		ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.3167114257812	2	532.316566	1062.61858	0.1249	6.6486E-05	0.18748	9.9798E-05	0.31238	0.00016628	532.3165295570681	22.51	0.18919	22.51	22.414	22.604	0					11	4	3	0	0	0	0.12278	1	7331	7331		67.494	2.0283	1	1029800			44872	4817	29683	29802	45441	45441					0.08977424605586748
TVYRGLVQK	9	Unmodified	_TVYRGLVQK_					0	0	0		ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.3167114257812	2	532.316566	1062.61858	0.29264	0.00015578	-0.21835	-0.00011623	0.074287	3.9544E-05	532.3166182722339	22.216	0.13545	22.216	22.156	22.291	0					7	4	2	0	0	0	0.39283	1	6513	6513		42.864	16.171	1	109950			44873	4817	29683	29802	45442	45442					0.08977424605586748
TVYRGLVQK	9	Unmodified	_TVYRGLVQK_					0	0	0		ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.3167724609375	2	532.316566	1062.61858	0.28879	0.00015373	0.24111	0.00012834	0.5299	0.00028207	532.3165595266679	22.392	0.16711	22.392	22.334	22.501	0					8	3	3	0	0	0	0.090954	1	7582	7582		75.043	25.602	1	613270			44874	4817	29683	29802	45443	45443					0.08977424605586748
TVYRNPESFK	10	Unmodified	_TVYRNPESFK_					0	0	0		ENSG00000146066|ENST00000274787|HIGD2A	ENSG00000146066|ENST00000274787|HIGD2A	ENSG00000146066|ENST00000274787|HIGD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.2157897949219	3	414.215539	1239.62479	-2.3223	-0.00096191	2.7566	0.0011418	0.43434	0.00017991	414.21681821065954	23.641	1.0594	23.641	23.019	24.078	0					37	25	2	0	0	0	0.64646	1	7240	7240		28.577	0	1	83114			44875	4709	29684	29803	45444	45444					0.014558980464244087
TVYRNPESFK	10	Unmodified	_TVYRNPESFK_					0	0	0		ENSG00000146066|ENST00000274787|HIGD2A	ENSG00000146066|ENST00000274787|HIGD2A	ENSG00000146066|ENST00000274787|HIGD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.2154541015625	3	414.215539	1239.62479	-0.38844	-0.0001609	-0.065972	-2.7327E-05	-0.45442	-0.00018823	414.21555005611174	24.537	0.35902	24.537	24.38	24.739	0					23	7	4	0	0	0	0.63851	1	8493	8493		29.551	3.4874	1	558500			44876	4709	29684	29803	45445	45445					0.014558980464244087
TWARVLGKL	9	Unmodified	_TWARVLGKL_					0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.5513000488281	3	348.550193	1042.62875	3.0332	0.0010572	0.13405	4.6723E-05	3.1673	0.001104	348.5502331002863	30.905	0.40977	30.905	30.797	31.207	0					14	8	2	0	0	0	0.41958	1	11505	11505		40.058	40.058	1	1677200	+		44877	15276	29685	29804	45446	45446					0.10914032330811096
TWDRALEDE	9	Unmodified	_TWDRALEDE_					0	0	0			REV__ENSG00000196700|ENST00000369888|ZNF512B	REV__ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.7570190429688	2	567.756735	1133.49892	0.27585	0.00015661	0.21708	0.00012325	0.49293	0.00027986	567.756701537647	13.276	0.24348	13.276	13.176	13.419	0					9	5	3	0	0	0	0.61124	1	3205	3205		19.997	2.5288	1	457880	+		44878	17285	29686	29805	45447	45447					-0.06249233529661069
TWFLGGPWL	9	Unmodified	_TWFLGGPWL_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.780029296875	2	538.781828	1075.5491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.163	1	42.163	41.663	42.663	0								0	0	0	0.3368	1	16811	16811		13.775	0	1		+		44879	13154	29687	29806	45448	45448					0.014349656568128921
TWFLRKPS	8	Unmodified	_TWFLRKPS_					0	0	0		ENST00000497543.5_1_3:75471615-75471942:-|nuORF	ENST00000497543.5_1_3:75471615-75471942:-|nuORF	ENST00000497543.5_1_3:75471615-75471942:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7910766601562	2	517.792727	1033.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.996	1	17.996	17.496	18.496	0								0	0	0	1.7419	1	5182	5182		18.324	11.589	1				44880	10129	29688	29807	45449	45449					0.05545770405365147
TWFSKSPF	8	Unmodified	_TWFSKSPF_					0	0	0			REV__CFHR2|p.S61F|1|0.15|ENSG00000080910|chr1:196949578-196949578|C/T|missense_variant	REV__CFHR2|p.S61F|1|0.15|ENSG00000080910|chr1:196949578-196949578|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7579650878906	2	500.25036	998.486168	-1.0177	-0.0005091	0.31733	0.00015874	-0.70037	-0.00035036	500.25026741915565	35.274	0.10253	35.274	35.19	35.293	0					6	4	2	0	0	0	0.68432	1	11903	11903		35.618	1.4457	1	29529	+		44881	12446	29689	29808	45450	45450					-0.013136001312318513
TWPCSFPMADS	11	Unmodified	_TWPCSFPMADS_					0	0	0		COQ6|p.P179S|1|0.21|ENSG00000119723|chr14:73958200-73958200|C/T|missense_variant	COQ6|p.P179S|1|0.21|ENSG00000119723|chr14:73958200-73958200|C/T|missense_variant	COQ6|p.P179S|1|0.21|ENSG00000119723|chr14:73958200-73958200|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	621.2518310546875	2	621.251917	1240.48928	1.2065	0.00074957	-1.2287	-0.0007633	-0.02211	-1.3736E-05	621.2512062351443	35.463	0.36361	35.463	35.352	35.716	0					26	10	4	0	0	0	0.63225	1	13739	13739		31.53	0	1	520330			44882	678	29690	29809	45451	45451					-0.12134461131040553
TWPHCKEFA	9	Unmodified	_TWPHCKEFA_					0	0	0			REV__ENST00000489304.5_1_20:44746991-44755859:+|nuORF	REV__ENST00000489304.5_1_20:44746991-44755859:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7615356445312	2	559.758027	1117.5015	3.4707	0.0019428	1.5225	0.00085223	4.9932	0.002795	559.758785564709	36.637	1.8592	36.637	36.297	38.156	0					69	38	4	0	0	0	0.11898	1	14276	14276		75.043	0.78827	1	623130	+		44883	13582	29691	29810	45452	45452					-0.05255056605687969
TWQPHTRRH	9	Unmodified	_TWQPHTRRH_					0	0	0			REV__ENST00000469678.1_1_3:53259917-53265542:-|nuORF	REV__ENST00000469678.1_1_3:53259917-53265542:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.2139587402344	3	406.879484	1217.61662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.582	1	15.582	15.082	16.082	0								0	0	0	0.28666	1	3526	3526		37.812	5.061	1		+		44884	19458	29692	29811	45453	45453					0.016518086403266352
TWRGCGPGDP	10	Unmodified	_TWRGCGPGDP_					0	0	0		ENST00000252818.4_1_19:18390620-18391193:-|nuORF	ENST00000252818.4_1_19:18390620-18391193:-|nuORF	ENST00000252818.4_1_19:18390620-18391193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.727783203125	2	523.229633	1044.44471	0.76564	0.00040061	-4.2686	-0.0022335	-3.503	-0.0018329	523.2277780791677	16.455	0.14541	16.455	16.358	16.503	0					11	5	3	0	0	0	0.64162	1	3732	3732		29.17	6.1276	1	175250			44885	8248	29693	29812	45454	45454					-0.07573104162224809
TWTCAPMWTT	10	Unmodified	_TWTCAPMWTT_					0	0	0			REV__ENST00000490869.1_1_X:47062096-47065733:+|nuORF	REV__ENST00000490869.1_1_X:47062096-47065733:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	599.2571411132812	2	599.257002	1196.49945	-0.072849	-4.3655E-05	-0.17823	-0.00010681	-0.25108	-0.00015046	599.2570790869794	31.041	0.13646	31.041	30.944	31.08	0					6	3	2	0	0	0	0.70877	1	11265	11265		20.947	0.95016	1	208990	+		44886	19715	29694	29813	45455	45455					-0.09093853405829577
TWVASWPL	8	Unmodified	_TWVASWPL_					0	0	0		NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant;nc|ENSG00000015520|Q9UHC9-3|NPC1L1;nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1	NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant	NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2524108886719	2	480.252903	958.491253	2.314	0.0011113	-1.5816	-0.00075959	0.73235	0.00035171	480.25178915687894	28.835	0.4154	28.835	28.526	28.941	0					13	8	2	0	0	0	0.49887	1	10507	10507		60.294	12.637	1	413310			44887	1081	29695	29814	45456	45456					0.010347037313863439
TYADTLNHL	9	Unmodified	_TYADTLNHL_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.259521484375	2	524.258914	1046.50327	1.8043	0.00094591	-1.8699	-0.00098029	-0.065564	-3.4372E-05	524.2584125115477	37.47	0.28895	37.47	37.391	37.68	0					16	8	3	0	0	0	0.16806	1	14212	14212		65.465	17.808	1	214840			44888	4986	29696	29815	45457	45457					-0.018117243160986618
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.5491638183594	3	377.548741	1129.62439	-1.0974	-0.00041433	-1.4545	-0.00054916	-2.552	-0.00096349	377.549527240871	23.307	0.28252	23.307	23.179	23.461	0					25	9	4	0	0	0	0.38666	1	6965	6965		42.864	10.052	1	144030			44889	854;11582	29697	29816	45458	45458					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.5487060546875	3	377.548741	1129.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.478	1	23.478	22.978	23.978	0								0	0	0	0.1633	1	8094	8094		56.721	7.185	1				44890	854;11582	29697	29816	45459	45459					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.5487060546875	3	377.548741	1129.62439	0.69033	0.00026063	-4.3943	-0.0016591	-3.704	-0.0013984	377.8807814069779	23.496	0.70991	23.496	23.318	24.028	0					40	14	4	0	0	0	0.24334	1	7953	7953		56.434	8.4743	1	2483600			44891	854;11582	29697	29816	45460	45460					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.5487976074219	3	377.548741	1129.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.433	1	23.433	22.933	23.933	0								0	0	0	0.13137	1	7945	7945		64.207	12.872	1				44892	854;11582	29697	29816	45461	45461					0.06476523117225952
TYAFINWF	8	Unmodified	_TYAFINWF_					0	0	0			REV__nc|ENSG00000141314|P58872-2|RHBDL3	REV__nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2578125	2	531.258185	1060.50182	0.11942	6.3445E-05	-0.25301	-0.00013442	-0.13359	-7.097E-05	531.258199864813	46.503	0.13677	46.503	46.407	46.544	0					12	8	2	0	0	0	0.60719	1	17167	17167		47.916	0	1	96749	+		44893	15109	29698	29817	45462	45462					-0.02601313614195533
TYAGGTASATK	11	Unmodified	_TYAGGTASATK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF;ENST00000515160.5_1_5:95998126-96031662:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2562866210938	2	514.256371	1026.49819	0.020219	1.0398E-05	-0.35247	-0.00018126	-0.33225	-0.00017086	514.2563347197223	16.616	0.14068	16.616	16.521	16.662	0					5	3	2	0	0	0	0.21174	1	4546	4546		72.879	24.964	1	325300			44894	5038	29699	29818	45463	45463					-0.014000281787275526
TYAGGTASATK	11	Unmodified	_TYAGGTASATK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF;ENST00000515160.5_1_5:95998126-96031662:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2565307617188	2	514.256371	1026.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.58	1	16.58	16.08	17.08	0								0	0	0	0.35107	1	4765	4765		45.022	9.4039	1				44895	5038	29699	29818	45464	45464					-0.014000281787275526
TYAGGTASATK	11	Unmodified	_TYAGGTASATK_					0	0	0		nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST;CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant;ENST00000507487.5_1_5:95998126-96062463:+|nuORF;ENST00000515160.5_1_5:95998126-96031662:+|nuORF	nc|ENSG00000153113|P20810-9|CAST	nc|ENSG00000153113|P20810-9|CAST	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2555541992188	2	514.256371	1026.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.388	1	16.388	15.888	16.888	0								0	0	0	0.45344	1	3875	3875		25.126	2.0835	1				44896	5038	29699	29818	45465	45465					-0.014000281787275526
TYALYKMKL	9	Unmodified	_TYALYKMKL_					0	0	0			REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.8197631835938	2	565.817553	1129.62055	3.4707	0.0019638	-1.2703	-0.00071876	2.2004	0.001245	566.3172268063734	23.46	0.96112	23.46	23.252	24.213	0					24	19	2	0	0	0	0.19605	1	7949	7949		37.159	0	1	604220	+		44897	22203	29700	29819	45466	45466					0.06092717299156902
TYAPVKSFL	9	Unmodified	_TYAPVKSFL_					0	0	0		ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2872314453125	2	513.286943	1024.55933	1.1042	0.00056677	0.015809	8.1144E-06	1.12	0.00057489	513.7885816776136	41.323	0.12685	41.323	41.25	41.377	0					8	6	2	0	0	0	0.50858	1	15707	15707		31.53	3.6476	1	46066			44898	5212	29701	29820	45467	45467					0.04803528591378381
TYAPVKSFL	9	Unmodified	_TYAPVKSFL_					0	0	0		ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2869873046875	2	513.286943	1024.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.269	1	41.269	40.769	41.769	0								0	0	0	0.25587	1	16404	16404		42.864	0.46813	1				44899	5212	29701	29820	45468	45468					0.04803528591378381
TYCLAHKKK	9	Unmodified	_TYCLAHKKK_					0	0	0			REV__SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant	REV__SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.806396484375	2	546.305144	1090.59573	0.43242	0.00023623	3.8321	0.0020935	4.2645	0.0023297	546.8079661507444	25.139	0.64538	25.139	24.643	25.289	0					42	15	3	0	0	0	0.45358	1	8587	8587		37.159	0.71236	1	470040	+		44900	16551	29702	29821	45469	45469					0.05406082216450159
TYCYKLKVI	9	Unmodified	_TYCYKLKVI_					0	0	0			REV__ZDHHC9|p.K145N|1|0.69|ENSG00000188706|chrX:129823731-129823731|C/A|missense_variant	REV__ZDHHC9|p.K145N|1|0.69|ENSG00000188706|chrX:129823731-129823731|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	377.88104248046875	3	377.547461	1129.62055	-1.0974	-0.00041433	1.9356	0.00073078	0.83818	0.00031645	377.549527240871	23.307	0.28252	23.307	23.179	23.461	0					25	9	4	0	0	0	0.42902	1	7018	7018		39.253	4.1008	1	144030	+		44901	17184	29703	29822	45470	45470					0.06092717299156902
TYDGNHDTF	9	Unmodified	_TYDGNHDTF_					0	0	0		nc|ENSG00000136240|P33947-2|KDELR2;ENSG00000136240|ENST00000258739|KDELR2;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000105438|ENST00000330720|KDELR1	nc|ENSG00000136240|P33947-2|KDELR2	nc|ENSG00000136240|P33947-2|KDELR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.2152099609375	2	535.214703	1068.41485	0.58621	0.00031375	-0.65865	-0.00035252	-0.072438	-3.877E-05	535.2149780239835	26.019	0.11373	26.019	25.972	26.086	0					6	4	2	0	0	0	0.17854	1	7855	7855		64.207	14.183	1	68048			44902	4066	29704	29823	45471	45471					-0.11661764626569493
TYDGNHDTF	9	Unmodified	_TYDGNHDTF_					0	0	0		nc|ENSG00000136240|P33947-2|KDELR2;ENSG00000136240|ENST00000258739|KDELR2;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000105438|ENST00000330720|KDELR1	nc|ENSG00000136240|P33947-2|KDELR2	nc|ENSG00000136240|P33947-2|KDELR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2156372070312	2	535.214703	1068.41485	0.1759	9.4142E-05	1.3249	0.00070913	1.5008	0.00080327	535.2153743763314	26.243	0.25555	26.243	26.154	26.409	0					13	6	3	0	0	0	0.085655	1	9055	9055		82.75	11.455	1	387900			44903	4066	29704	29823	45472	45472					-0.11661764626569493
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7362060546875	2	511.234907	1020.45526	1.1291	0.00057722	-0.81724	-0.0004178	0.31182	0.00015941	511.2344505078336	31.428	0.53742	31.428	31.316	31.853	0					68	23	5	0	0	0	0.59773	2	10079	10079;10254		49.442	8.9161	1	1496400			44904	4313	29705	29824	45473;45474	45473					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2355651855469	2	511.234907	1020.45526	1.0094	0.00051606	-0.39736	-0.00020315	0.61207	0.00031291	511.2346761732439	31.66	1.384	31.66	31.531	32.915	0					99	34	7	0	0	0	0.2678	2	11537	11537;11706		93.195	40.259	1	9688100			44905	4313	29705	29824	45475;45476	45475					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.23504638671875	2	511.234907	1020.45526	-0.38037	-0.00019446	0.65147	0.00033305	0.2711	0.0001386	511.23516256715334	31.489	0.36745	31.489	31.371	31.739	0					33	14	3	0	0	0	0.43813	1	10417	10417		66.429	14.13	1	379600			44906	4313	29705	29824	45477	45477					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2353210449219	2	511.234907	1020.45526	0.41136	0.0002103	-0.051207	-2.6179E-05	0.36016	0.00018412	511.2349196132402	31.727	0.9702	31.727	31.572	32.542	0					51	21	5	0	0	0	0.25102	3	12135	11959;12135;12313		99.375	42.654	1	4929200			44907	4313	29705	29824	45478;45479;45480	45479					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.2348937988281	2	511.234907	1020.45526	0.84923	0.00043416	-0.66459	-0.00033976	0.18464	9.4394E-05	511.2346364647402	31.49	0.49838	31.49	31.356	31.854	0					29	13	4	0	0	0	0.28427	1	10841	10841		87.754	2.3948	1	1268500			44908	4313	29705	29824	45481	45481					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.23504638671875	2	511.234907	1020.45526	0.3651	0.00018665	0.29782	0.00015226	0.66293	0.00033891	511.2350435528473	31.478	0.50502	31.478	31.342	31.847	0					33	13	4	0	0	0	0.2678	1	10833	10833		93.195	30.217	1	2024000			44909	4313	29705	29824	45482	45482					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2349548339844	2	511.234907	1020.45526	0.022129	1.1313E-05	0.51661	0.00026411	0.53874	0.00027542	511.2351033880847	31.675	1.2673	31.675	31.521	32.789	0					71	25	4	0	0	0	0.2678	2	11831	11831;12000		93.195	30.217	1	8470200			44910	4313	29705	29824	45483;45484	45483					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2348937988281	2	511.234907	1020.45526	1.3948	0.00071306	-1.2274	-0.0006275	0.16737	8.5563E-05	511.2342141224009	31.658	1.2223	31.658	31.454	32.676	0					57	24	3	0	0	0	0.2678	1	11845	11845		93.195	30.217	1	10162000			44911	4313	29705	29824	45485	45485					-0.05414798236131446
TYDKMWAF	8	Unmodified	_TYDKMWAF_					0	0	0		nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-4|GRIK2;GRIK2|p.G830Efs*34|1|0.07|ENSG00000164418|chr6:102055506-102055507|-/AA|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2	nc|ENSG00000164418|Q13002-6|GRIK2	nc|ENSG00000164418|Q13002-6|GRIK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.2432250976562	2	531.241678	1060.4688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.235	1	29.235	28.735	29.735	0								0	0	0	1.7419	1	9500	9500		49.442	1.5259	1				44912	5691	29706	29825	45486	45486					-0.059012637285604796
TYDKMWAF	8	Unmodified	_TYDKMWAF_					0	0	0		nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-4|GRIK2;GRIK2|p.G830Efs*34|1|0.07|ENSG00000164418|chr6:102055506-102055507|-/AA|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2	nc|ENSG00000164418|Q13002-6|GRIK2	nc|ENSG00000164418|Q13002-6|GRIK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2432250976562	2	531.241678	1060.4688	3.4243	0.0018191	0.23655	0.00012566	3.6608	0.0019448	531.2416793864509	29.433	1.2513	29.433	29.174	30.425	0					61	25	5	0	0	0	0.32815	1	10766	10766		79.451	5.4763	1	16827000			44913	5691	29706	29825	45487	45487					-0.059012637285604796
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.2594604492188	2	576.259445	1150.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.011	1	28.011	27.511	28.511	0								0	0	0	0.03526	1	8702	8702		93.143	10.903	1				44914	4273	29707	29826	45488	45488					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.2586669921875	2	576.259445	1150.50434	0.94034	0.00054188	-1.2471	-0.00071864	-0.30674	-0.00017676	576.258917382215	27.986	0.1161	27.986	27.948	28.065	0					6	4	2	0	0	0	0.27249	1	8696	8696		52.937	8.5595	1	73098			44915	4273	29707	29826	45489	45489					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.2603759765625	2	576.259445	1150.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.265	1	28.265	27.765	28.765	0								0	0	0	0.0019965	1	9969	9969		120.87	45.825	1				44916	4273	29707	29826	45490	45490					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.2597045898438	2	576.259445	1150.50434	0.037022	2.1334E-05	0.4181	0.00024094	0.45513	0.00026227	576.2596673790239	28.022	0.36927	28.022	27.931	28.3	0					34	13	4	0	0	0	0.022525	1	8981	8981		117.81	52.346	1	985970			44917	4273	29707	29826	45491	45491					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.2608032226562	2	576.259445	1150.50434	0.59586	0.00034337	-0.16531	-9.5259E-05	0.43055	0.00024811	576.2592978710038	28.106	0.34516	28.106	27.992	28.337	0					22	8	4	0	0	0	0.015496	1	9260	9260		129.42	81.506	1	762880			44918	4273	29707	29826	45492	45492					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2598876953125	2	576.259445	1150.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.208	1	28.208	27.708	28.708	0								0	0	0	9.3182E-10	1	10191	10191		214.23	111.46	1				44919	4273	29707	29826	45493	45493					-0.06489509947186889
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.2511596679688	2	538.250754	1074.48696	0.81869	0.00044066	-0.41723	-0.00022457	0.40146	0.00021609	538.2507589625724	33.806	0.20428	33.806	33.73	33.934	0					18	8	3	0	0	0	0.063171	1	11012	11012		90.601	19.305	1	246680			44920	2911	29708	29827	45494	45494					-0.047308502728583335
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2509155273438	2	538.250754	1074.48696	0.2326	0.0001252	0.27841	0.00014986	0.51101	0.00027505	538.2509488805904	34.065	0.34815	34.065	33.947	34.295	0					22	9	4	0	0	0	0.037712	1	12645	12645		101.46	40.488	1	1539100			44921	2911	29708	29827	45495	45495					-0.047308502728583335
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2515258789062	2	538.250754	1074.48696	-0.0053577	-2.8838E-06	1.0735	0.00057783	1.0682	0.00057495	538.2513736871991	33.879	0.2602	33.879	33.798	34.059	0					16	10	2	0	0	0	0.13726	1	11383	11383		70.816	21.375	1	236810			44922	2911	29708	29827	45496	45496					-0.047308502728583335
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2507934570312	2	538.250754	1074.48696	0.29834	0.00016058	0.2515	0.00013537	0.54984	0.00029595	538.2508460984459	34.085	0.40063	34.085	33.935	34.336	0					21	9	4	0	0	0	0.012936	1	13092	13092		134.77	52.525	1	937960			44923	2911	29708	29827	45497	45497					-0.047308502728583335
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	597.2490234375	2	597.248546	1192.48254	0.062064	3.7068E-05	1.0431	0.00062302	1.1052	0.00066008	597.2487274388941	42.097	0.14683	42.097	42.056	42.203	0					10	7	2	0	0	0	0.38666	1	15965	15965		42.864	3.6114	1	49178			44924	241	29709	29828	45498	45498					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.2488403320312	2	597.248546	1192.48254	1.8387	0.0010981	-1.6586	-0.00099061	0.18003	0.00010752	597.2475498355682	42.031	0.32651	42.031	41.942	42.268	0					16	8	3	0	0	0	0.011389	1	16742	16742		138.06	83.286	1	347190			44925	241	29709	29828	45499	45499					-0.10600314695761881
TYEKTSAD	8	Unmodified	_TYEKTSAD_					0	0	0		CON__P00978	CON__P00978	CON__P00978	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7083435058594	2	457.708722	913.402892	-0.4374	-0.0002002	0.053427	2.4454E-05	-0.38397	-0.00017575	457.70855000144024	17.098	0.27082	17.098	16.988	17.259	0					12	5	3	0	0	0	0.52345	1	4883	4883		57.811	4.4598	1	342110		+	44926	629	29710	29829	45500	45500					-0.05727381369752038
TYETKTALL	9	Unmodified	_TYETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.287353515625	2	520.28714	1038.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.665	1	32.665	32.165	33.165	0								0	0	0	0.33029	1	10571	10571		29.17	0.020503	1				44927	1989	29711	29830	45501	45501					0.0419890352056882
TYETKTALL	9	Unmodified	_TYETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2874755859375	2	520.28714	1038.55973	1.6809	0.00087453	-1.3603	-0.00070776	0.32053	0.00016677	520.286509491388	32.916	0.30644	32.916	32.759	33.065	0					13	6	3	0	0	0	0.15163	1	12567	12567		67.494	22.963	1	566320			44928	1989	29711	29830	45502	45502					0.0419890352056882
TYETKTALL	9	Unmodified	_TYETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2875366210938	2	520.28714	1038.55973	-1.3488	-0.00070175	2.1654	0.0011266	0.81664	0.00042489	520.2884507847942	32.675	0.13846	32.675	32.623	32.762	0					11	4	3	0	0	0	0.51991	1	11416	11416		30.318	1.1477	1	63382			44929	1989	29711	29830	45503	45503					0.0419890352056882
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.2798461914062	2	589.279846	1176.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.502	1	38.502	38.002	39.002	0								0	0	0	0.27939	1	12553	12553		39.253	6.4404	1				44930	2991	29712	29831	45504	45504					-0.03607168627581814
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.280029296875	2	589.279846	1176.54514	0.17881	0.00010537	0.27457	0.0001618	0.45338	0.00026717	589.2798990941747	38.793	0.33888	38.793	38.727	39.066	0					26	12	3	0	0	0	0.087861	1	14736	14736		82.241	25.807	1	317680			44931	2991	29712	29831	45505	45505					-0.03607168627581814
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.2799682617188	2	589.279846	1176.54514	1.472	0.00086741	-1.0434	-0.00061485	0.4286	0.00025256	589.2791887253803	38.763	0.31328	38.763	38.677	38.99	0					28	11	3	0	0	0	0.28897	1	15207	15207		51.193	14.746	1	620100			44932	2991	29712	29831	45506	45506					-0.03607168627581814
TYFDLWIML	9	Unmodified	_TYFDLWIML_					0	0	0			REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.2030029296875	3	401.203583	1200.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.421	1	25.421	24.921	25.921	0								0	0	0	0.3368	1	7907	7907		27.882	7.8855	1		+		44933	18394	29713	29832	45507	45507					-0.003352754547904624
TYFEKFDL	8	Unmodified	_TYFEKFDL_					0	0	0			REV__ADCY2|p.P894L|1|0.43|ENSG00000078295|chr5:7802270-7802270|C/T|missense_variant	REV__ADCY2|p.P894L|1|0.43|ENSG00000078295|chr5:7802270-7802270|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.761962890625	2	531.760758	1061.50696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.744	1	20.744	20.244	21.244	0								0	0	0	1.7419	1	5605	5605		17.365	1.7232	1		+		44934	12082	29714	29833	45508	45508					-0.021330545422415526
TYFEKNFNL	9	Unmodified	_TYFEKNFNL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.2909545898438	2	588.290214	1174.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.085	1	43.085	42.585	43.585	0								0	0	0	0.22284	1	17231	17231		47.657	12.505	1				44935	2469	29715	29834	45509	45509					-0.0144257824788383
TYFGNLCPTQ	10	Unmodified	_TYFGNLCPTQ_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.260986328125	2	572.260599	1142.50665	3.3831	0.001936	-2.8404	-0.0016255	0.54272	0.00031058	572.2589710157428	39.007	0.2535	39.007	38.903	39.157	0					12	5	3	0	0	0	0.56063	1	15397	15397		38.754	1.5945	1	360990			44936	11626	29716	29835	45510	45510					-0.05890797533720615
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.280029296875	2	567.279315	1132.54408	1.9369	0.0010988	-0.62267	-0.00035323	1.3143	0.00074556	567.2786705297708	47.02	0.203	47.02	46.951	47.154	0					17	11	2	0	0	0	0.10915	1	18002	18002		77.318	31.366	1	87882			44937	4958	29717	29836	45511	45511					-0.016893829964601537
TYGGSWKF	8	Unmodified	_TYGGSWKF_					0	0	0		AIG1|p.L42R|1|0.11|ENSG00000146416|chr6:143061050-143061050|T/G|missense_variant;nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	AIG1|p.L42R|1|0.11|ENSG00000146416|chr6:143061050-143061050|T/G|missense_variant	AIG1|p.L42R|1|0.11|ENSG00000146416|chr6:143061050-143061050|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2264404296875	2	473.226885	944.439217	0.656	0.00031044	-1.2917	-0.00061129	-0.63573	-0.00030085	473.22638239440573	39.725	0.41497	39.725	39.602	40.017	0					20	9	3	0	0	0	0.72381	1	15744	15744		30.504	1.3541	1	153950			44938	102	29718	29837	45512	45512					-0.035224596823809406
TYGQHKFW	8	Unmodified	_TYGQHKFW_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7594604492188	2	533.758884	1065.50321	0.28996	0.00015477	0.46603	0.00024875	0.75599	0.00040352	533.75923874139	12.421	0.63286	12.421	12.168	12.801	0					45	15	4	0	0	0	0.79719	1	2739	2739		18.324	18.324	1	2301000	+		44939	13913	29719	29838	45513	45513					-0.026916795254237513
TYGSGFHF	8	Unmodified	_TYGSGFHF_					0	0	0		nc|ENSG00000284753|P0DPD7|EEF1AKMT4	nc|ENSG00000284753|P0DPD7|EEF1AKMT4	nc|ENSG00000284753|P0DPD7|EEF1AKMT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.20343017578125	2	458.20341	914.392267	-0.1555	-7.1251E-05	0.74452	0.00034114	0.58902	0.00026989	458.20363430168965	39.721	0.21067	39.721	39.633	39.844	0					10	7	2	0	0	0	0.64096	1	15635	15635		42.474	12.633	1	58300			44940	11819	29720	29839	45514	45514					-0.06835319233528026
TYGSGFHF	8	Unmodified	_TYGSGFHF_					0	0	0		nc|ENSG00000284753|P0DPD7|EEF1AKMT4	nc|ENSG00000284753|P0DPD7|EEF1AKMT4	nc|ENSG00000284753|P0DPD7|EEF1AKMT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.20379638671875	2	458.20341	914.392267	-0.43923	-0.00020126	0.97518	0.00044683	0.53595	0.00024557	458.203821440613	39.665	0.23837	39.665	39.575	39.813	0					8	5	2	0	0	0	0.74117	1	15681	15681		28.254	2.8041	1	68521			44941	11819	29720	29839	45515	45515					-0.06835319233528026
TYGWTANM	8	Unmodified	_TYGWTANM_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2017517089844	2	472.202553	942.390553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.947	1	43.947	43.447	44.447	0								0	0	0	1.7419	1	17608	17608		24.203	6.8378	1				44942	1647;1916	29721	29840	45516	45516					-0.08294696313794248
TYHPPGQTF	9	Unmodified	_TYHPPGQTF_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.24853515625	2	524.248349	1046.48214	0.71948	0.00037719	0.060698	3.1821E-05	0.78018	0.00040901	524.2483945355998	27.844	1.0508	27.844	27.458	28.509	0					87	35	3	0	0	0	0.055856	2	8725	8580;8725		93.195	35.384	1	1796400			44943	11803	29722	29841	45517;45518	45518					-0.0392368962495766
TYHPPGQTF	9	Unmodified	_TYHPPGQTF_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.2485961914062	2	524.248349	1046.48214	0.09244	4.8461E-05	0.47932	0.00025128	0.57176	0.00029975	524.2486036863539	28.147	1.835	28.147	27.489	29.324	0					127	45	5	0	0	0	0.0040894	3	10001	9838;10001;10175		162.25	79.947	1	8381400			44944	11803	29722	29841	45519;45520;45521	45520					-0.0392368962495766
TYHPPGQTF	9	Unmodified	_TYHPPGQTF_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2484741210938	2	524.248349	1046.48214	0.55649	0.00029174	0.10232	5.3643E-05	0.65882	0.00034538	524.2484650044727	27.905	1.1392	27.905	27.442	28.581	0					94	40	3	0	0	0	0.014688	3	8970	8828;8970;9152		131.03	61.938	1	2114900			44945	11803	29722	29841	45522;45523;45524	45523					-0.0392368962495766
TYHPPGQTF	9	Unmodified	_TYHPPGQTF_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2486572265625	2	524.248349	1046.48214	0.07369	3.8632E-05	0.034531	1.8103E-05	0.10822	5.6734E-05	524.2484669089622	28.159	0.58421	28.159	27.931	28.515	0					28	12	3	0	0	0	0.17854	1	10238	10238		64.207	21.811	1	298410			44946	11803	29722	29841	45525	45525					-0.0392368962495766
TYHTLSKETKK	11	Unmodified	_TYHTLSKETKK_					0	0	0			REV__TMEM63A|p.Y285H|1|0.04|ENSG00000196187|chr1:225862553-225862553|A/G|missense_variant	REV__TMEM63A|p.Y285H|1|0.04|ENSG00000196187|chr1:225862553-225862553|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.24609375	3	445.913748	1334.71942	-0.16774	-7.4797E-05	-4.1015	-0.0018289	-4.2692	-0.0019037	446.246342505731	23.72	0.21802	23.72	23.612	23.83	0					6	4	2	0	0	0	0.66391	1	8226	8226		31.068	3.4242	1	119570	+		44947	21654	29723	29842	45526	45526					0.06544411797744942
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7830200195312	2	534.782222	1067.54989	0.5491	0.00029365	0.56848	0.00030401	1.1176	0.00059766	534.7825695464552	29.956	0.13069	29.956	29.893	30.024	0					8	5	2	0	0	0	0.25761	1	9503	9503		54.722	11.096	1	68186			44948	3151	29724	29843	45527	45527					0.01881715515196447
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7823486328125	2	534.782222	1067.54989	0.16728	8.9457E-05	0.62332	0.00033334	0.7906	0.0004228	534.7825261715054	30.203	0.20887	30.203	30.115	30.324	0					12	5	3	0	0	0	0.11411	1	10873	10873		76.17	21.275	1	369250			44949	3151	29724	29843	45528	45528					0.01881715515196447
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7830810546875	2	534.782222	1067.54989	1.0928	0.00058442	-0.31907	-0.00017064	0.77375	0.00041379	534.782023130029	30.024	0.18889	30.024	29.929	30.118	0					9	4	3	0	0	0	0.30841	1	10184	10184		49.536	1.8787	1	298710			44950	3151	29724	29843	45529	45529					0.01881715515196447
TYIGGPRAL	9	Unmodified	_TYIGGPRAL_					0	0	0			REV__ENST00000376259.6_1_1:12227075-12248914:+|nuORF	REV__ENST00000376259.6_1_1:12227075-12248914:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.2689208984375	2	474.269084	946.523616	0.60837	0.00028853	-1.3386	-0.00063487	-0.73027	-0.00034634	474.2684858730238	39.787	0.29358	39.787	39.672	39.966	0					26	10	3	0	0	0	0.50461	1	15654	15654		31.955	0	1	176020	+		44951	18716	29725	29844	45530	45530					0.048214911343848144
TYIKLISAAV	10	Unmodified	_TYIKLISAAV_					0	0	0			REV__UBXN6|p.M159L|1|0.18|ENSG00000167671|chr19:4448382-4448382|T/A|missense_variant	REV__UBXN6|p.M159L|1|0.18|ENSG00000167671|chr19:4448382-4448382|T/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8292846679688	2	539.828975	1077.6434	1.9637	0.0010601	-1.0494	-0.00056648	0.91436	0.0004936	539.8282498427108	35.184	0.79966	35.184	34.959	35.759	0					57	22	4	0	0	0	0.41055	1	13770	13770		51.193	0	1	7825900	+		44952	22257	29726	29845	45531	45531					0.10768059688257381
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2929077148438	2	520.292756	1038.57096	0.6567	0.00034168	-0.78452	-0.00040818	-0.12782	-6.6503E-05	520.292443763254	36.623	0.23956	36.623	36.559	36.798	0					23	13	3	0	0	0	0.34452	1	12007	12007		46.457	12.284	1	185770			44953	5732	29727	29846	45532	45532					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.292724609375	2	520.292756	1038.57096	0.068154	3.546E-05	-0.15077	-7.8446E-05	-0.082619	-4.2986E-05	520.2926115646601	36.937	0.40733	36.937	36.811	37.219	0					26	11	3	0	0	0	0.047855	1	13942	13942		96.034	43.097	1	716470			44954	5732	29727	29846	45533	45533					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2926635742188	2	520.292756	1038.57096	0.25715	0.00013379	-0.19329	-0.00010057	0.063859	3.3225E-05	520.2925380495922	36.712	0.20311	36.712	36.635	36.838	0					18	11	3	0	0	0	0.30841	1	12418	12418		49.536	15.364	1	145790			44955	5732	29727	29846	45534	45534					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.292724609375	2	520.292756	1038.57096	1.683	0.00087565	-1.1829	-0.00061544	0.50011	0.0002602	520.2920024293709	36.897	0.32542	36.897	36.801	37.127	0					26	10	3	0	0	0	0.032383	1	14391	14391		106.68	35.387	1	1369700			44956	5732	29727	29846	45535	45535					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.292724609375	2	520.292756	1038.57096	-0.23911	-0.00012441	-0.57637	-0.00029988	-0.81548	-0.00042429	520.2924248048282	36.89	0.20709	36.89	36.82	37.027	0					11	6	2	0	0	0	0.10506	1	14402	14402		78.264	26.928	1	258500			44957	5732	29727	29846	45536	45536					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2932739257812	2	520.292756	1038.57096	1.0092	0.00052507	-0.54844	-0.00028535	0.46074	0.00023972	520.2923962637697	36.7	0.1202	36.7	36.637	36.757	0					9	5	2	0	0	0	0.21419	1	13137	13137		59.931	6.9941	1	69749			44958	5732	29727	29846	45537	45537					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	ENSG00000164823|ENST00000451899|OSGIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2929077148438	2	520.292756	1038.57096	1.623	0.00084444	-1.0336	-0.00053776	0.58944	0.00030668	520.2922044531006	36.871	0.45762	36.871	36.713	37.171	0					16	9	2	0	0	0	0.019258	1	14352	14352		123.21	35.512	1	1227500			44959	5732	29727	29846	45538	45538					0.053217256147036096
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.7847900390625	2	550.784764	1099.55498	1.2909	0.00071101	-0.64709	-0.00035641	0.64381	0.0003546	550.7844651136079	36.366	0.20655	36.366	36.28	36.486	0					23	10	3	0	0	0	0.2546	1	11907	11907		55.084	18.637	1	311530			44960	2833	29728	29847	45539	45539					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.78515625	2	550.784764	1099.55498	0.56405	0.00031067	0.029767	1.6395E-05	0.59382	0.00032707	550.7846437254769	36.634	0.73337	36.634	36.408	37.142	0					36	20	4	0	0	0	0.014648	1	13817	13817		131.12	54.342	1	1953300			44961	2833	29728	29847	45540	45540					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.7852172851562	2	550.784764	1099.55498	0.30121	0.0001659	0.4121	0.00022698	0.71331	0.00039288	550.7850883305769	36.431	0.29997	36.431	36.341	36.641	0					31	16	3	0	0	0	0.024312	1	12331	12331		114.86	45.231	1	409030			44962	2833	29728	29847	45541	45541					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.78515625	2	550.784764	1099.55498	1.666	0.00091763	-0.42854	-0.00023603	1.2375	0.0006816	550.7844724756634	36.604	0.49893	36.604	36.502	37	0					43	15	5	0	0	0	0.017741	1	14256	14256		125.71	46	1	3091500			44963	2833	29728	29847	45542	45542					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.7850341796875	2	550.784764	1099.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.609	1	36.609	36.109	37.109	0								0	0	0	0.11963	1	14269	14269		66.962	17.426	1				44964	2833	29728	29847	45543	45543					0.009180193778092871
TYLDKIKKF	9	Unmodified	_TYLDKIKKF_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.A2565T|1|0.18|ENSG00000054654|chr14:64051606-64051606|G/A|missense_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.89703369140625	3	385.897258	1154.66995	0.55963	0.00021596	-0.55269	-0.00021328	0.0069418	2.6788E-06	385.8969607695013	32.712	0.31816	32.712	32.557	32.875	0					18	6	4	0	0	0	0.61124	1	12397	12397		18.262	0.79408	1	792030			44965	1272	29729	29848	45544	45544					0.09879748579601255
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.221435546875	3	360.221742	1077.6434	0.11769	4.2394E-05	-0.23896	-8.6079E-05	-0.12127	-4.3684E-05	360.22157784936803	34.966	0.26879	34.966	34.831	35.099	0					26	11	3	0	0	0	0.44593	1	11425	11425		37.812	9.73	1	312550			44966	7203	29730	29849	45545	45545					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.829833984375	2	539.828975	1077.6434	0.93621	0.00050539	-0.15521	-8.3789E-05	0.78099	0.0004216	539.8289431529422	34.934	0.19858	34.934	34.85	35.049	0					18	8	3	0	0	0	0.054723	1	11432	11432		87.696	36.361	1	178780			44967	7203	29730	29849	45546	45546					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.22174072265625	3	360.221742	1077.6434	0.48244	0.00017379	-0.46485	-0.00016745	0.017597	6.3388E-06	360.22156792085616	35.189	0.68913	35.189	35.022	35.711	0					45	18	4	0	0	0	0.1424	1	13146	13146		69.628	23.655	1	3797000			44968	7203	29730	29849	45547	45547					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.8297729492188	2	539.828975	1077.6434	0.2631	0.00014203	0.70988	0.00038322	0.97298	0.00052525	539.8293472498307	35.189	0.39573	35.189	35.061	35.457	0					26	10	4	0	0	0	0.0076184	1	13162	13162		146.79	61.87	1	1949000			44969	7203	29730	29849	45548	45548					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.82958984375	2	539.828975	1077.6434	-0.065384	-3.5296E-05	0.82478	0.00044524	0.7594	0.00040994	539.8292742922647	34.991	0.25999	34.991	34.894	35.154	0					32	11	4	0	0	0	0.055856	1	11806	11806		93.195	21.318	1	494700			44970	7203	29730	29849	45549	45549					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	360.2220153808594	3	360.221742	1077.6434	-0.92194	-0.0003321	0.93558	0.00033702	0.013642	4.9141E-06	360.22210792870834	34.991	0.23687	34.991	34.894	35.131	0					19	10	2	0	0	0	0.32741	1	11807	11807		54.776	7.119	1	298880			44971	7203	29730	29849	45550	45550					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.829345703125	2	539.828975	1077.6434	1.9637	0.0010601	-1.0494	-0.00056648	0.91436	0.0004936	539.8282498427108	35.184	0.79966	35.184	34.959	35.759	0					57	22	4	0	0	0	0.01077	1	13604	13604		134.77	47.069	1	7825900			44972	7203	29730	29849	45551	45551					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	USP7|p.R1090H|1|0.23|ENSG00000187555|chr16:8894038-8894038|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.3314208984375	2	539.828975	1077.6434	1.0249	0.00055328	0.098017	5.2913E-05	1.1229	0.00060619	539.8289085175037	34.955	0.23557	34.955	34.89	35.126	0					16	7	4	0	0	0	0.032181	1	12410	12410		90.601	42.944	1	390190			44973	7203	29730	29849	45552	45552					0.10768059688280118
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000527389.2_1_11:108198407-108199966:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2874145507812	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.886	1	35.886	35.386	36.386	0								0	0	0	0.045272	1	13492	13492		88.177	29.395	1				44974	251	29731	29850	45553	45553					0.03646903520575506
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000527389.2_1_11:108198407-108199966:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2874145507812	2	526.28714	1050.55973	0.60982	0.00032094	-0.23924	-0.00012591	0.37058	0.00019503	526.2872076756067	35.793	0.26072	35.793	35.687	35.948	0					12	5	3	0	0	0	0.15163	1	13860	13860		67.494	16.158	1	335910			44975	251	29731	29850	45554	45554					0.03646903520575506
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000527389.2_1_11:108198407-108199966:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2874145507812	2	526.28714	1050.55973	1.6277	0.00085662	-3.1272	-0.0016458	-1.4995	-0.00078917	526.285444596036	35.781	0.3129	35.781	35.568	35.881	0					15	6	3	0	0	0	0.026538	1	13852	13852		112.41	22.041	1	683490			44976	251	29731	29850	45555	45555					0.03646903520575506
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENSG00000103351|ENST00000576634|CLUAP1	ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENST00000572632.1_1_16:3569992-3580585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.3059692382812	2	578.305864	1154.59717	3.2621	0.0018865	-3.8315	-0.0022158	-0.56938	-0.00032928	578.3033120425564	42.172	0.21279	42.172	42.122	42.335	0					8	5	3	0	0	0	0.25716	1	16822	16822		54.776	7.119	1	167400			44977	2232	29732	29851	45556	45556					0.026059947862222543
TYLELPISR	9	Unmodified	_TYLELPISR_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|251|2|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|251|2|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|251|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.8115234375	2	546.308406	1090.60226	0.47915	0.00026177	0.57493	0.00031409	1.0541	0.00057586	546.3086481391462	24.153	0.35956	24.153	24.053	24.413	0					34	11	5	0	0	0	0.50858	1	7451	7451		31.53	2.3598	1	1760000			44978	11186	29733	29852	45557	45557					0.06058298648804339
TYLFPWQI	8	Unmodified	_TYLFPWQI_					0	0	0		ENST00000527252.1_1_11:103339262-103349978:+|nuORF	ENST00000527252.1_1_11:103339262-103349978:+|nuORF	ENST00000527252.1_1_11:103339262-103349978:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.28173828125	2	534.28166	1066.54877	1.1049	0.00059031	-0.88431	-0.00047247	0.22056	0.00011784	534.2811586988057	30.951	0.41679	30.951	30.793	31.21	0					22	11	3	0	0	0	0.68432	1	10590	10590		35.618	1.4457	1	722180			44979	10386	29734	29853	45558	45558					0.018155459369381788
TYLKDGLLK	9	Unmodified	_TYLKDGLLK_					0	0	0			REV__PLCL2|p.E599Rfs*11|1|0.38|ENSG00000154822|chr3:17011137-17011137|A/-|frameshift_variant	REV__PLCL2|p.E599Rfs*11|1|0.38|ENSG00000154822|chr3:17011137-17011137|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.8135986328125	2	525.813325	1049.6121	1.3571	0.00071357	-0.27642	-0.00014535	1.0807	0.00056822	525.8130984339379	34.223	0.2707	34.223	34.138	34.408	0					30	12	4	0	0	0	0.13726	1	11179	11179		84.916	42.519	1	536040	+		44980	15577	29735	29854	45559	45559					0.08927486654192762
TYLLTNAQNY	10	Unmodified	_TYLLTNAQNY_					0	0	0			REV__ENSG00000132952|ENST00000255304|USPL1	REV__ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.79833984375	2	600.798403	1199.58225	-0.17745	-0.00010661	0.47721	0.00028671	0.29977	0.0001801	600.7985288067187	25.661	0.171	25.661	25.573	25.744	0					8	4	2	0	0	0	0.38179	1	8803	8803		45.972	9.5255	1	418730	+		44981	14686	29736	29855	45560	45560					-0.00955497081804424
TYLLTNAQNY	10	Unmodified	_TYLLTNAQNY_					0	0	0			REV__ENSG00000132952|ENST00000255304|USPL1	REV__ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.86798095703125	3	400.868027	1199.58225	0.47588	0.00019076	-0.70626	-0.00028312	-0.23038	-9.2354E-05	400.8677717599542	25.608	0.60324	25.608	25.448	26.051	0					16	10	3	0	0	0	0.64162	1	8977	8977		29.17	1.0886	1	823670	+		44982	14686	29736	29855	45561	45561					-0.00955497081804424
TYLSSKSQPSA	11	Unmodified	_TYLSSKSQPSA_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.7970581054688	2	584.79586	1167.57717	3.2139	0.0018795	0.68735	0.00040196	3.9013	0.0022815	584.7961834355608	43.747	0.27345	43.747	43.652	43.925	0					18	8	4	0	0	0	0.30836	1	17500	17500		61.691	17.314	1	242070			44983	4119	29737	29856	45562	45562					8.199055582736037E-05
TYLWVPENGI	10	Unmodified	_TYLWVPENGI_					0	0	0			REV__RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	REV__RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.30615234375	2	596.305864	1190.59717	-1.8262	-0.001089	0.5514	0.0003288	-1.2748	-0.00076019	596.306081856336	23.644	0.38155	23.644	23.462	23.844	0					20	9	3	0	0	0	0.70967	1	7221	7221		10.265	0	1	156920	+		44984	17747	29738	29857	45563	45563					0.009499947861968394
TYMGHTGAVW	10	Oxidation (M)	_TYM(Oxidation (M))GHTGAVW_		TYM(1)GHTGAVW		TYM(49)GHTGAVW	0	0	1		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.7542724609375	2	569.752941	1137.49133	1.1354	0.00064688	-0.12802	-7.2941E-05	1.0074	0.00057394	569.7528945692397	31.147	0.33928	31.147	31.009	31.348	0					21	13	2	0	0	0	0.46215	1	9960	9960		49.442	10.189	1	123120			44985	1715	29739	29858	45564	45564		80			-0.07191664330935055
TYMGHTGAVW	10	Oxidation (M)	_TYM(Oxidation (M))GHTGAVW_		TYM(1)GHTGAVW		TYM(74)GHTGAVW	0	0	1		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.753173828125	2	569.752941	1137.49133	0.054284	3.0928E-05	0.058901	3.3559E-05	0.11318	6.4487E-05	569.7531613793496	31.412	0.28936	31.412	31.242	31.531	0					24	7	4	0	0	0	0.24256	1	11403	11403		74.255	37.096	1	534780			44986	1715	29739	29858	45565	45565		80			-0.07191664330935055
TYMGHTGAVW	10	Oxidation (M)	_TYM(Oxidation (M))GHTGAVW_		TYM(1)GHTGAVW		TYM(66)GHTGAVW	0	0	1		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.75341796875	2	569.752941	1137.49133	1.9817	0.0011291	-0.85721	-0.0004884	1.1245	0.00064068	569.752914224128	31.443	0.41101	31.443	31.257	31.668	0					28	9	4	0	0	0	0.30737	1	11864	11864		66.429	29.27	1	384490			44987	1715	29739	29858	45566	45566		80			-0.07191664330935055
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.7554321289062	2	561.755484	1121.49641	1.2738	0.00071557	-0.76821	-0.00043155	0.50559	0.00028402	561.7553470131497	36.046	0.18756	36.046	35.976	36.163	0					19	8	3	0	0	0	0.44469	1	11807	11807		51.335	21.018	1	289210			44988	1715	29739	29859	45567	45567					-0.059473604683034864
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.7550659179688	2	561.755484	1121.49641	0.47287	0.00026564	0.50971	0.00028633	0.98258	0.00055197	561.7558909106958	36.348	0.74133	36.348	36.199	36.941	0					36	20	2	0	0	0	0.072943	1	13675	13675		101.6	46.097	1	1304000			44989	1715	29739	29859	45568	45568					-0.059473604683034864
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7559814453125	2	561.755484	1121.49641	0.12855	7.2212E-05	1.4405	0.00080923	1.5691	0.00088144	561.7558476000621	36.105	0.16515	36.105	36.023	36.188	0					11	6	2	0	0	0	0.52707	1	12231	12231		42.396	13.226	1	101200			44990	1715	29739	29859	45569	45569					-0.059473604683034864
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.7551879882812	2	561.755484	1121.49641	-0.41453	-0.00023287	0.47806	0.00026855	0.06353	3.5688E-05	561.7556775116182	36.117	0.3004	36.117	36.04	36.341	0					16	13	2	0	0	0	0.51121	1	12228	12228		44.117	8.4985	1	139230			44991	1715	29739	29859	45570	45570					-0.059473604683034864
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7559814453125	2	561.755484	1121.49641	1.841	0.0010342	-0.79584	-0.00044707	1.0452	0.00058714	561.7552701599153	36.321	0.15856	36.321	36.202	36.36	0					13	4	4	0	0	0	0.072943	1	14141	14141		101.6	63.789	1	689220			44992	1715	29739	29859	45571	45571					-0.059473604683034864
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.75537109375	2	561.755484	1121.49641	0.020848	1.1711E-05	0.18286	0.00010272	0.20371	0.00011443	561.7557806423013	36.343	0.44594	36.343	36.23	36.676	0					29	12	3	0	0	0	0.16018	1	14137	14137		84.916	38.459	1	716740			44993	1715	29739	29859	45572	45572					-0.059473604683034864
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.7554321289062	2	561.755484	1121.49641	-0.93845	-0.00052718	1.3778	0.00077398	0.43934	0.0002468	561.7562565503256	36.07	0.15576	36.07	36.002	36.158	0					14	5	3	0	0	0	0.47859	1	12890	12890		47.657	5.1829	1	243740			44994	1715	29739	29859	45573	45573					-0.059473604683034864
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.755859375	2	561.755484	1121.49641	3.4694	0.001949	-2.487	-0.0013971	0.98237	0.00055185	561.7542068155836	36.257	1.1996	36.257	36.149	37.349	0					38	24	2	0	0	0	0.024256	1	14083	14083		122.18	69.239	1	2713300			44995	1715	29739	29859	45574	45574					-0.059473604683034864
TYMKDLYQL	9	Oxidation (M)	_TYM(Oxidation (M))KDLYQL_		TYM(1)KDLYQL		TYM(58)KDLYQL	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.7913208007812	2	595.791732	1189.56891	0.15261	9.0925E-05	-0.041725	-2.4859E-05	0.11089	6.6065E-05	595.791688149886	37.388	0.43137	37.388	37.168	37.599	0					30	12	3	0	0	0	0.22837	1	14103	14103		58.23	17.452	1	375370			44996	4728	29740	29860	45575	45575		195			-0.018290711854206165
TYMKDLYQL	9	Unmodified	_TYMKDLYQL_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.794189453125	2	587.794275	1173.574	0.13489	7.9288E-05	0.41876	0.00024614	0.55365	0.00032543	587.7944219011241	44.031	0.25547	44.031	43.935	44.191	0					31	14	3	0	0	0	0.070005	1	16551	16551		88.177	34.825	1	381160			44997	4728	29740	29861	45576	45576					-0.005847673228117856
TYNPAFSRL	9	Unmodified	_TYNPAFSRL_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	534.7772827148438	2	534.777274	1067.53999	0.16518	8.8337E-05	0.28476	0.00015228	0.44995	0.00024062	534.777571169472	36.55	0.33746	36.55	36.447	36.784	0					12	9	2	0	0	0	0.30841	1	13789	13789		49.536	10.73	1	301880			44998	4733	29741	29862	45577	45577					0.008925723004722386
TYNPAFSRL	9	Unmodified	_TYNPAFSRL_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.778076171875	2	534.777274	1067.53999	1.8561	0.00099261	-1.102	-0.00058932	0.75412	0.00040329	534.7766091454939	36.47	0.31881	36.47	36.362	36.681	0					14	6	3	0	0	0	0.44949	1	14167	14167		37.508	1.8899	1	490870			44999	4733	29741	29862	45578	45578					0.008925723004722386
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.2887573242188	2	569.288005	1136.56146	1.4608	0.0008316	-1.0929	-0.00062217	0.36789	0.00020943	569.2875221590331	26.091	0.5609	26.091	26.006	26.566	0					49	19	4	0	0	0	0.13267	1	7871	7871		71.877	20.542	1	773870			45000	5770	29742	29863	45579	45579					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	380.195556640625	3	379.861096	1136.56146	0.52406	0.00019907	-0.66767	-0.00025362	-0.1436	-5.455E-05	379.860836971391	26.084	0.45361	26.084	26.006	26.459	0					42	15	4	0	0	0	0.51817	1	7872	7872		54.776	25.627	1	581450			45001	5770	29742	29863	45580	45580					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.2883911132812	2	569.288005	1136.56146	1.7561	0.00099971	-2.09	-0.0011898	-0.33394	-0.00019011	569.2871788426313	26.335	1.3895	26.335	26.247	27.636	0					87	33	5	0	0	0	0.0012088	2	9061	9061;9245		180.87	104.1	1	5326900			45002	5770	29742	29863	45581;45582	45581					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.28857421875	2	569.288005	1136.56146	0.10609	6.0393E-05	0.78931	0.00044934	0.89539	0.00050974	569.2884513311959	26.114	0.19046	26.114	26.026	26.216	0					16	6	3	0	0	0	0.10915	1	8155	8155		77.318	38.065	1	287930			45003	5770	29742	29863	45583	45583					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.8611755371094	3	379.861096	1136.56146	0.51096	0.00019409	-0.58121	-0.00022078	-0.070248	-2.6685E-05	379.860872814739	26.367	0.26064	26.367	26.217	26.477	0					17	5	4	0	0	0	0.47038	1	9442	9442		51.193	16.041	1	1114100			45004	5770	29742	29863	45584	45584					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.2892456054688	2	569.288005	1136.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.204	1	26.204	25.704	26.704	0								0	0	0	0.24544	1	8403	8403		44.377	8.7589	1				45005	5770	29742	29863	45585	45585					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.288330078125	2	569.288005	1136.56146	0.64264	0.00036585	-0.61685	-0.00035117	0.025792	1.4683E-05	569.2878612383997	26.183	0.62254	26.183	26.081	26.704	0					35	14	3	0	0	0	0.02953	1	8377	8377		109.48	51.248	1	887740			45006	5770	29742	29863	45586	45586					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.8610534667969	3	379.861096	1136.56146	-0.47997	-0.00018232	0.24207	9.1952E-05	-0.23791	-9.0371E-05	379.8611714876584	26.307	1.3247	26.307	26.202	27.526	0					64	26	5	0	0	0	0.37197	2	9264	9264;9606		69.628	33.181	1	5213000			45007	5770	29742	29863	45587;45588	45587					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2890014648438	2	569.288005	1136.56146	0.35603	0.00020268	-0.010324	-5.8772E-06	0.3457	0.0001968	569.2881362149134	26.306	0.52008	26.306	26.202	26.722	0					17	10	3	0	0	0	0.019882	1	9269	9269		122.18	55.747	1	763060			45008	5770	29742	29863	45589	45589					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.2882080078125	2	569.288005	1136.56146	1.6332	0.00092974	-1.9497	-0.0011099	-0.31653	-0.0001802	569.2872638927911	26.29	1.5786	26.29	26.185	27.763	0					90	31	5	0	0	0	0.0059092	1	9261	9261		154.12	76.801	1	6685000			45009	5770	29742	29863	45590	45590					-0.001360426708288287
TYNWAPDL	8	Unmodified	_TYNWAPDL_					0	0	0		SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.22857666015625	2	490.229625	978.444697	-0.72277	-0.00035433	-1.4816	-0.00072631	-2.2043	-0.0010806	490.2292717260763	39.646	0.4287	39.646	39.5	39.929	0					17	15	2	0	0	0	0.70055	1	15595	15595		33.516	1.9858	1	46180			45010	7539	29743	29864	45591	45591					-0.045387808905843485
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.2770385742188	2	602.277106	1202.53966	3.0733	0.001851	-2.9731	-0.0017906	0.10026	6.0382E-05	602.2757243113108	42.259	0.35054	42.259	42.122	42.473	0					18	9	3	0	0	0	0.13519	1	16841	16841		71.296	38.483	1	152140			45011	2755	29744	29865	45592	45592					-0.053508474193904476
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.76123046875	2	517.761289	1033.50803	1.3124	0.00067949	0.059719	3.092E-05	1.3721	0.00071041	518.2630513930173	43.127	0.20588	43.127	43.068	43.274	0					14	11	2	0	0	0	0.010494	1	16299	16299		139.97	71.184	1	78025			45012	2446	29745	29866	45593	45593					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7625122070312	2	517.761289	1033.50803	1.5427	0.00079878	-0.35085	-0.00018166	1.1919	0.00061712	517.7610034798814	43.107	0.27552	43.107	42.976	43.252	0					24	13	3	0	0	0	0.10915	1	16867	16867		77.318	29.358	1	269230			45013	2446	29745	29866	45594	45594					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7612915039062	2	517.761289	1033.50803	0.23244	0.00012035	0.78924	0.00040864	1.0217	0.00052898	517.7613813433966	43.043	0.17441	43.043	42.96	43.134	0					6	4	2	0	0	0	0.026538	1	17222	17222		112.41	40.533	1	107090			45014	2446	29745	29866	45595	45595					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7615966796875	2	517.761289	1033.50803	1.5662	0.0008109	-1.0858	-0.00056219	0.48036	0.00024871	517.7606192822936	43.028	0.3184	43.028	42.928	43.247	0					21	9	4	0	0	0	0.048471	1	17196	17196		95.815	29.386	1	526730			45015	2446	29745	29866	45596	45596					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7611694335938	2	517.761289	1033.50803	3.3307	0.0017245	-2.9129	-0.0015082	0.41784	0.00021634	517.7594614875604	43.019	0.23223	43.019	42.946	43.178	0					10	6	2	0	0	0	0.098791	1	17208	17208		79.713	33.74	1	154610			45016	2446	29745	29866	45597	45597					-0.007388401733351202
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.7432861328125	2	511.743096	1021.47164	1.1494	0.00058821	-0.18025	-9.2244E-05	0.96916	0.00049596	511.7429407227383	36.754	0.45528	36.754	36.529	36.984	0					44	24	2	0	0	0	0.063823	2	12117	12011;12117		90.37	26.163	1	143860			45017	3293	29746	29867	45598;45599	45599					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7425842285156	2	511.743096	1021.47164	1.0294	0.00052679	-1.2638	-0.00064672	-0.23435	-0.00011993	511.74243890954693	37.036	0.9547	37.036	36.38	37.335	0					52	26	3	0	0	0	0.037924	2	13963	13963;14123		101.25	51.717	1	642760			45018	3293	29746	29867	45600;45601	45600					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.74359130859375	2	511.743096	1021.47164	0.0004724	2.4175E-07	0.43928	0.0002248	0.43976	0.00022504	511.7433384005414	37.089	0.48029	37.089	36.811	37.292	0					20	13	2	0	0	0	0.3269	1	13987	13987		47.96	8.7067	1	135690			45019	3293	29746	29867	45602	45602					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7439270019531	2	511.743096	1021.47164	-0.34981	-0.00017901	0.77405	0.00039611	0.42424	0.0002171	511.7434810733907	36.877	0.54468	36.877	36.592	37.137	0					68	29	3	0	0	0	0.02953	2	12512	12402;12512		109.48	43.049	1	300970			45020	3293	29746	29867	45603;45604	45604					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.7441101074219	2	511.743096	1021.47164	0.40086	0.00020514	0.45751	0.00023413	0.85837	0.00043927	511.74327072587056	36.869	0.53745	36.869	36.581	37.119	0					42	24	2	0	0	0	0.21263	2	13245	13120;13245		60.118	19.546	1	253670			45021	3293	29746	29867	45605;45606	45606					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.74346923828125	2	511.743096	1021.47164	0.039377	2.0151E-05	-0.25242	-0.00012918	-0.21305	-0.00010903	511.74294534164113	37.011	0.40912	37.011	36.778	37.187	0					19	8	3	0	0	0	0.13726	1	14387	14387		70.816	26.699	1	101140			45022	3293	29746	29867	45607	45607					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7428894042969	2	511.743096	1021.47164	1.4098	0.00072147	-1.8049	-0.00092367	-0.39511	-0.0002022	511.7422649519109	37.029	1.0534	37.029	36.313	37.366	0					52	21	4	0	0	0	0.047855	2	14329	14329;14515		96.034	31.819	1	1689100			45023	3293	29746	29867	45608;45609	45608					-0.03823717070042676
TYPKMIPE	8	Oxidation (M)	_TYPKM(Oxidation (M))IPE_		TYPKM(1)IPE		TYPKM(74)IPE	0	0	1		IL13RA2|p.F376L|1|0.48|ENSG00000123496|chrX:115004095-115004095|A/C|missense_variant;ENSG00000123496|ENST00000243213|IL13RA2	IL13RA2|p.F376L|1|0.48|ENSG00000123496|chrX:115004095-115004095|A/C|missense_variant	IL13RA2|p.F376L|1|0.48|ENSG00000123496|chrX:115004095-115004095|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.7509765625	2	497.749336	993.484119	2.9135	0.0014502	0.48211	0.00023997	3.3956	0.0016902	497.74956617862046	17.218	0.66048	17.218	17.107	17.767	0					24	13	3	0	0	0	0.37378	1	4912	4912		73.975	73.975	1	8571600			45024	3325	29747	29868	45610	45610		142			-0.012883969313520538
TYPSQLPSL	9	Unmodified	_TYPSQLPSL_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.26788330078125	2	503.266207	1004.51786	0.99809	0.00050231	0.16013	8.0586E-05	1.1582	0.00058289	503.2663269808041	46.635	0.21069	46.635	46.46	46.67	0					15	12	2	0	0	0	0.18416	1	17894	17894		63.534	8.6393	1	57055			45025	3616	29748	29869	45611	45611					0.01578347832048621
TYPSQLPSL	9	Unmodified	_TYPSQLPSL_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.2662658691406	2	503.266207	1004.51786	1.1727	0.00059021	-0.9087	-0.00045732	0.26405	0.00013289	503.26565960056706	46.567	0.22739	46.567	46.395	46.622	0					16	10	2	0	0	0	0.17854	1	18603	18603		64.207	6.396	1	49344			45026	3616	29748	29869	45612	45612					0.01578347832048621
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2694091796875	2	548.269478	1094.5244	1.2448	0.00068247	-0.67412	-0.0003696	0.57064	0.00031287	548.2690967116188	39.166	0.41633	39.166	39.023	39.439	0					67	24	4	0	0	0	0.037924	1	12717	12717		101.25	8.1094	1	1402800			45027	6845	29749	29870	45613	45613					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.26953125	2	548.269478	1094.5244	0.48805	0.00026759	-0.27565	-0.00015113	0.21241	0.00011646	548.2694223113698	39.492	0.82472	39.492	39.333	40.158	0					94	31	6	0	0	0	0.029571	1	15139	15139		109.44	45.232	1	8281300			45028	6845	29749	29870	45614	45614					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2704467773438	2	548.269478	1094.5244	0.40127	0.00022	0.52217	0.00028629	0.92344	0.0005063	548.2697219275288	39.264	0.32504	39.264	39.152	39.477	0					53	18	4	0	0	0	0.34452	1	13188	13188		46.457	12.535	1	1163800			45029	6845	29749	29870	45615	45615					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.269775390625	2	548.269478	1094.5244	-0.29257	-0.00016041	0.73203	0.00040135	0.43946	0.00024094	548.2700748405034	39.258	0.25251	39.258	39.186	39.438	0					39	14	4	0	0	0	0.24334	1	13192	13192		56.434	15.656	1	474310			45030	6845	29749	29870	45616	45616					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2694702148438	2	548.269478	1094.5244	0.29838	0.00016359	0.72852	0.00039942	1.0269	0.00056302	548.2697909664467	39.453	0.64883	39.453	39.207	39.856	0					43	22	3	0	0	0	0.017421	1	15497	15497		126.24	48.925	1	2604600			45031	6845	29749	29870	45617	45617					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2689819335938	2	548.269478	1094.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.249	1	39.249	38.749	39.749	0								0	0	0	0.18541	1	14004	14004		53.089	1.8963	1				45032	6845	29749	29870	45618	45618					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2699584960938	2	548.269478	1094.5244	1.8649	0.0010225	-1.2126	-0.00066482	0.65228	0.00035763	548.2688839634901	39.431	0.41927	39.431	39.332	39.752	0					20	9	4	0	0	0	0.013878	1	15568	15568		132.76	31.157	1	848970			45033	6845	29749	29870	45619	45619					-0.019077590072356543
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.2837524414062	2	557.282389	1112.55022	1.297	0.00072279	-0.65634	-0.00036577	0.64065	0.00035703	557.2820234978253	31.952	0.33467	31.952	31.839	32.173	0					37	13	4	0	0	0	0.026656	1	10279	10279		106.68	26.97	1	1100300			45034	1884	29750	29871	45620	45620					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.2825317382812	2	557.282389	1112.55022	0.55094	0.00030703	-0.011794	-6.5728E-06	0.53915	0.00030046	557.2822738579682	32.176	0.81696	32.176	32.048	32.865	0					52	20	4	0	0	0	0.01077	1	11773	11773		134.77	55.053	1	5791500			45035	1884	29750	29871	45621	45621					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2832641601562	2	557.282389	1112.55022	0.11764	6.5559E-05	1.0598	0.00059058	1.1774	0.00065614	557.2830305987227	31.983	0.21226	31.983	31.909	32.121	0					13	8	2	0	0	0	0.021035	1	10641	10641		114.89	34.44	1	162070			45036	1884	29750	29871	45622	45622					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.2819213867188	2	557.282389	1112.55022	-0.4827	-0.000269	0.82268	0.00045846	0.33998	0.00018946	557.2826884254303	31.985	0.26205	31.985	31.899	32.161	0					23	10	3	0	0	0	0.024312	1	10624	10624		109.48	73.032	1	506610			45037	1884	29750	29871	45623	45623					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2830200195312	2	557.282389	1112.55022	1.7184	0.00095762	-0.44059	-0.00024553	1.2778	0.00071208	557.2820258388035	32.182	0.29158	32.182	32.081	32.372	0					19	6	4	0	0	0	0.01942	1	12217	12217		117.81	21.996	1	1709500			45038	1884	29750	29871	45624	45624					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.282958984375	2	557.282389	1112.55022	-0.17142	-9.5531E-05	0.7679	0.00042794	0.59647	0.0003324	557.2827577927214	32.166	0.81075	32.166	32.064	32.875	0					34	19	4	0	0	0	0.0079272	1	12188	12188		141.52	51.151	1	2243500			45039	1884	29750	29871	45625	45625					-0.001548647649542545
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7862548828125	2	554.785296	1107.55604	1.3099	0.00072672	-0.51516	-0.0002858	0.79475	0.00044091	554.7850556099853	33.764	0.21704	33.764	33.676	33.894	0					20	8	3	0	0	0	0.032383	1	10999	10999		106.68	21.522	1	213310			45040	3469	29751	29872	45626	45626					0.006562337467130419
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7855224609375	2	554.785296	1107.55604	0.5953	0.00033026	0.35905	0.00019919	0.95435	0.00052946	554.7851506778668	34.041	0.23409	34.041	33.909	34.143	0					21	6	4	0	0	0	0.014413	1	12646	12646		131.62	35.801	1	1186200			45041	3469	29751	29872	45627	45627					0.006562337467130419
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.7850341796875	2	554.785296	1107.55604	0.15006	8.3252E-05	0.19137	0.00010617	0.34143	0.00018942	554.7853883732074	33.838	0.19556	33.838	33.75	33.945	0					12	7	2	0	0	0	0.24334	1	11374	11374		56.434	6.8977	1	136920			45042	3469	29751	29872	45628	45628					0.006562337467130419
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.7855224609375	2	554.785296	1107.55604	-0.43012	-0.00023862	1.2636	0.00070105	0.83353	0.00046243	554.7858540406254	33.833	0.11559	33.833	33.766	33.882	0					7	4	2	0	0	0	0.11411	1	11382	11382		76.17	16.239	1	96543			45043	3469	29751	29872	45629	45629					0.006562337467130419
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7855834960938	2	554.785296	1107.55604	-0.04702	-2.6086E-05	1.0904	0.00060496	1.0434	0.00057887	554.785511634278	34.056	0.23794	34.056	33.935	34.173	0					14	5	3	0	0	0	0.067603	1	13093	13093		89.029	9.5778	1	468670			45044	3469	29751	29872	45630	45630					0.006562337467130419
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7852783203125	2	554.785296	1107.55604	-1.0993	-0.00060987	1.5494	0.00085959	0.45012	0.00024972	554.7860964079566	33.804	0.22715	33.804	33.702	33.929	0					15	6	3	0	0	0	0.047855	1	11906	11906		96.034	13.793	1	251510			45045	3469	29751	29872	45631	45631					0.006562337467130419
TYQTTLLHF	9	Unmodified	_TYQTTLLHF_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2926635742188	2	562.292756	1122.57096	1.782	0.001002	-0.64738	-0.00036401	1.1346	0.00063799	562.292306403173	46.136	0.16122	46.136	46.061	46.222	0					14	7	2	0	0	0	0.24095	1	18465	18465		56.721	16.148	1	62739			45046	934	29752	29873	45632	45632					0.014577256147049411
TYQTTLLHF	9	Unmodified	_TYQTTLLHF_					0	0	0		ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1;ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	ICA1|p.E307Lfs*26|1|0.05|ENSG00000003147|chr7:8141801-8141802|-/TTTTTCAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2919921875	2	562.292756	1122.57096	3.4695	0.0019509	-2.7243	-0.0015318	0.74527	0.00041906	562.2911912755376	46.165	0.15918	46.165	46.056	46.215	0					12	7	2	0	0	0	0.21263	1	18462	18462		60.118	5.3419	1	62687			45047	934	29752	29873	45633	45633					0.014577256147049411
TYRDVAIEFS	10	Unmodified	_TYRDVAIEFS_					0	0	0		ZNF91|p.F15Y|1|0.38|ENSG00000167232|chr19:23374751-23374751|A/T|missense_variant	ZNF91|p.F15Y|1|0.38|ENSG00000167232|chr19:23374751-23374751|A/T|missense_variant	ZNF91|p.F15Y|1|0.38|ENSG00000167232|chr19:23374751-23374751|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.8679504394531	3	400.868027	1199.58225	0.83627	0.00033523	-0.90274	-0.00036188	-0.066469	-2.6645E-05	400.8676143189577	25.644	0.54814	25.644	25.535	26.084	0					12	9	2	0	0	0	0.61238	1	9141	9141		32.751	2.1817	1	1435600			45048	23176	29753	29874	45634	45634					-0.00955497081804424
TYRDVAIEFS	10	Unmodified	_TYRDVAIEFS_					0	0	0		ZNF91|p.F15Y|1|0.38|ENSG00000167232|chr19:23374751-23374751|A/T|missense_variant	ZNF91|p.F15Y|1|0.38|ENSG00000167232|chr19:23374751-23374751|A/T|missense_variant	ZNF91|p.F15Y|1|0.38|ENSG00000167232|chr19:23374751-23374751|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.7987670898438	2	600.798403	1199.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.617	1	25.617	25.117	26.117	0								0	0	0	0.28607	1	8992	8992		40.778	7.9657	1				45049	23176	29753	29874	45635	45635					-0.00955497081804424
TYRFDGTY	8	Unmodified	_TYRFDGTY_					0	0	0			REV__DCLRE1B|p.K420Rfs*3|1|0.23|ENSG00000118655|chr1:113911848-113911848|A/-|frameshift_variant	REV__DCLRE1B|p.K420Rfs*3|1|0.23|ENSG00000118655|chr1:113911848-113911848|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7332458496094	2	511.732532	1021.45051	1.0247	0.00052438	1.7424	0.00089164	2.7671	0.001416	511.7335682104572	37.327	0.2125	37.327	37.292	37.504	0					11	6	2	0	0	0	0.41701	1	14153	14153		68.787	0.30212	1	201990	+		45050	12679	29754	29875	45636	45636					-0.059356823789016744
TYRKCYML	8	Unmodified	_TYRKCYML_					0	0	0		ENSG00000146216|ENST00000259750|TTBK1;nc|ENSG00000146216|Q5TCY1-2|TTBK1;TTBK1|p.P669Hfs*4|1|0.1|ENSG00000146216|chr6:43282742-43282742|C/-|frameshift_variant	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2647094726562	2	539.26463	1076.51471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.466	1	39.466	38.966	39.966	0								0	0	0	1.7419	1	15525	15525		33.516	1.9858	1				45051	4716	29755	29876	45637	45637					-0.020489418179522545
TYRNVMEQF	9	Unmodified	_TYRNVMEQF_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant;BAIAP2L1|p.N24D|1|0.22|ENSG00000006453|chr7:98362414-98362414|T/C|missense_variant;BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant;BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant;ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.2796630859375	2	594.279323	1186.54409	0.25752	0.00015304	0.21157	0.00012573	0.46909	0.00027877	594.2795409913651	39.049	0.18996	39.049	38.97	39.16	0					16	7	3	0	0	0	0.15558	1	14851	14851		66.962	15.626	1	180330			45052	978	29756	29877	45638	45638					-0.041717062681300376
TYRNVMEQF	9	Unmodified	_TYRNVMEQF_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant;BAIAP2L1|p.N24D|1|0.22|ENSG00000006453|chr7:98362414-98362414|T/C|missense_variant;BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant;BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant;ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.2800903320312	2	594.279323	1186.54409	-0.54677	-0.00032493	1.9626	0.0011663	1.4158	0.00084141	594.2808308249807	38.821	0.13232	38.821	38.779	38.911	0					9	7	2	0	0	0	0.11411	1	13080	13080		76.17	21.393	1	45673			45053	978	29756	29877	45639	45639					-0.041717062681300376
TYRNVMEQF	9	Unmodified	_TYRNVMEQF_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant;BAIAP2L1|p.N24D|1|0.22|ENSG00000006453|chr7:98362414-98362414|T/C|missense_variant;BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant;BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant;ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.2796020507812	2	594.279323	1186.54409	1.4733	0.00087554	-1.3966	-0.00082998	0.076661	4.5558E-05	594.2786180777134	38.987	0.30746	38.987	38.919	39.227	0					27	10	4	0	0	0	0.15558	1	15311	15311		66.962	12.186	1	473260			45054	978	29756	29877	45640	45640					-0.041717062681300376
TYRNVMEQF	9	Unmodified	_TYRNVMEQF_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant;BAIAP2L1|p.N24D|1|0.22|ENSG00000006453|chr7:98362414-98362414|T/C|missense_variant;BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant;BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant;ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	594.280029296875	2	594.279323	1186.54409	-1.8047	-0.0010725	3.1031	0.0018441	1.2984	0.00077159	594.2815645522447	38.774	0.086967	38.774	38.729	38.816	0					7	4	2	0	0	0	0.44949	1	13863	13863		37.508	0.34906	1	59023			45055	978	29756	29877	45641	45641					-0.041717062681300376
TYRNVMEQF	9	Unmodified	_TYRNVMEQF_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant;BAIAP2L1|p.N24D|1|0.22|ENSG00000006453|chr7:98362414-98362414|T/C|missense_variant;BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant;BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant;ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.2791137695312	2	594.279323	1186.54409	1.5902	0.000945	-1.7104	-0.0010165	-0.12026	-7.1471E-05	594.2785066960572	38.973	0.2079	38.973	38.871	39.079	0					10	4	3	0	0	0	0.067603	1	15375	15375		89.029	24.822	1	305180			45056	978	29756	29877	45642	45642					-0.041717062681300376
TYRTPSVLN	9	Unmodified	_TYRTPSVLN_					0	0	0		nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2;DLGAP2|p.T341Hfs*6|1|0.11|ENSG00000198010|chr8:1565708-1565709|-/C|frameshift_variant	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7789306640625	2	525.782556	1049.55056	1.7685	0.00092986	-0.42936	-0.00022575	1.3392	0.00070411	526.2845061924339	35.865	0.39118	35.865	35.637	36.028	0					28	11	5	0	0	0	0.0792	1	13966	13966		84.916	5.2029	1	746820			45057	7520	29757	29878	45643	45643					0.027765549549030766
TYRVETVKP	9	Unmodified	_TYRVETVKP_					0	0	0		ENST00000544867.5_1_9:95060120-95062368:-|nuORF;nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	ENST00000544867.5_1_9:95060120-95062368:-|nuORF	ENST00000544867.5_1_9:95060120-95062368:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.5414733886719	3	364.873113	1091.59751	0.48341	0.00017638	2.6759	0.00097637	3.1593	0.0011528	364.8742989758465	25.116	0.9136	25.116	24.528	25.442	0					41	18	3	0	0	0	0.5654	1	8703	8703		32.812	1.2826	1	1163000			45058	7517	29758	29879	45644	45644					0.05537414506034111
TYSFQFAPSPS	11	Unmodified	_TYSFQFAPSPS_					0	0	0			REV__ENST00000533277.5_1_11:66612933-66613146:+|nuORF	REV__ENST00000533277.5_1_11:66612933-66613146:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	616.2850952148438	2	616.285128	1230.5557	-0.65554	-0.000404	0.77456	0.00047735	0.11902	7.3348E-05	616.2855224312102	30.236	0.15024	30.236	30.166	30.316	0					9	5	2	0	0	0	0.55715	1	9911	9911		40.058	9.7405	1	92064	+		45059	20080	29759	29880	45645	45645					-0.050351859731335935
TYSKAMAKL	9	Unmodified	_TYSKAMAKL_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.77825927734375	2	506.778428	1011.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.868	1	23.868	23.368	24.368	0								0	0	0	0.099216	1	8281	8281		71.877	22.436	1				45060	3644	29760	29881	45646	45646					0.036992847139231344
TYSPALNKMF	10	Oxidation (M)	_TYSPALNKM(Oxidation (M))F_		TYSPALNKM(1)F		TYSPALNKM(93)F	0	0	1		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.C124G|1|0.84|ENSG00000141510|chr17:7675999-7675999|A/C|missense_variant;TP53|p.C135Y|1|0.64|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.2924194335938	2	594.291899	1186.56925	1.4772	0.00087789	-1.6402	-0.00097478	-0.16303	-9.6887E-05	594.2910691421646	34.143	0.40876	34.143	33.865	34.274	0					18	9	3	0	0	0	0.11308	1	13058	13058		93.143	48.766	1	328350			45061	4452	29761	29882	45647	45647		183			-0.016576514655525898
TYSPALNKMF	10	Unmodified	_TYSPALNKMF_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.E198Gfs*11|1|0.43|ENSG00000141510|chr17:7674938-7674939|-/C|frameshift_variant;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.H178Tfs*69|1|0.68|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.I195Nfs*14|1|0.81|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.P153Afs*28|1|0.62|ENSG00000141510|chr17:7675156-7675157|-/G|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;TP53|p.P151Rfs*27|1|0.46|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.C124G|1|0.84|ENSG00000141510|chr17:7675999-7675999|A/C|missense_variant;TP53|p.C135Y|1|0.64|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.2946166992188	2	586.294442	1170.57433	1.4222	0.00083386	-1.316	-0.00077159	0.10621	6.2271E-05	586.2938295599074	42.637	0.33393	42.637	42.541	42.875	0					38	16	4	0	0	0	0.21754	1	16710	16710		77.318	33.201	1	470450			45062	4452	29761	29883	45648	45648					-0.004133476029210215
TYSSIKKF	8	Unmodified	_TYSSIKKF_					0	0	0		ENST00000514372.5_3_4:42412314-42412431:-|nuORF	ENST00000514372.5_3_4:42412314-42412431:-|nuORF	ENST00000514372.5_3_4:42412314-42412431:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.26922607421875	2	487.271293	972.528032	-2.9112	-0.0014185	-1.7983	-0.00087626	-4.7095	-0.0022948	487.27052314314204	30.749	0.11333	30.749	30.68	30.793	0					5	3	2	0	0	0	0.75243	1	10523	10523		26.796	0.10319	1	69625			45063	10253	29762	29884	45649	45649					0.040669555572890204
TYSSSYEQF	9	Unmodified	_TYSSSYEQF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2337646484375	2	556.232561	1110.45057	1.6898	0.00093993	-0.26641	-0.00014819	1.4234	0.00079174	556.2322001887705	38.663	0.22614	38.663	38.596	38.822	0					14	8	3	0	0	0	0.10915	1	15169	15169		77.318	15.626	1	129040			45064	3978	29763	29885	45650	45650					-0.10023727169550511
TYSSSYEQF	9	Unmodified	_TYSSSYEQF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2329711914062	2	556.232561	1110.45057	1.8223	0.0010136	-0.96845	-0.00053868	0.8538	0.00047491	556.2318914556815	38.635	0.16817	38.635	38.526	38.695	0					5	3	2	0	0	0	0.087861	1	15221	15221		82.241	0	1	210830			45065	3978	29763	29885	45651	45651					-0.10023727169550511
TYSVKDSVA	9	Unmodified	_TYSVKDSVA_					0	0	0		ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2477111816406	2	485.248015	968.481476	0.6572	0.0003189	-2.6203	-0.0012715	-1.9631	-0.00095259	485.24766228564306	21.221	0.31077	21.221	21.093	21.404	0					17	7	3	0	0	0	0.2873	1	6725	6725		51.335	0	1	385350			45066	7002	29764	29886	45652	45652					-0.004025290646609392
TYSYGLGSCVK	11	Unmodified	_TYSYGLGSCVK_					0	0	0		ENSG00000155087|ENST00000285402|ODF1	ENSG00000155087|ENST00000285402|ODF1	ENSG00000155087|ENST00000285402|ODF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.2805786132812	2	589.281531	1176.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.595	1	38.595	38.095	39.095	0								0	0	0	0.34425	1	13011	13011		45.972	1.5951	1				45067	5115	29765	29887	45653	45653					-0.03270241845234523
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENST00000462501.1_1_2:96858901-96861247:-|nuORF;STARD7|p.N240Tfs*3|1|0.15|ENSG00000084090|chr2:96193102-96193102|T/-|frameshift_variant;ENSG00000084090|ENST00000337288|STARD7	ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENST00000462501.1_1_2:96858901-96861247:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	614.3037719726562	2	614.303852	1226.59315	-0.86332	-0.00053034	0.80954	0.0004973	-0.053777	-3.3036E-05	614.3043646926898	34.163	0.34815	34.163	33.947	34.295	0					21	9	3	0	0	0	0.27065	1	12698	12698		70.816	25.794	1	200570			45068	1709	29766	29888	45654	45654					-0.011080947075242875
TYTMKEKIYTM	11	Unmodified	_TYTMKEKIYTM_					0	0	0		nc|ENSG00000135679|Q00987-9|MDM2	nc|ENSG00000135679|Q00987-9|MDM2	nc|ENSG00000135679|Q00987-9|MDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	704.8443603515625	2	704.846181	1407.67781	-2.5939	-0.0018283	-0.011623	-8.1923E-06	-2.6056	-0.0018365	704.8461975978869	23.957	0.6762	23.957	23.633	24.309	0					50	15	6	0	0	0	0.40479	1	7953	7953		51.193	1.6567	1	10981000			45069	11538	29767	29889	45655	45655					-0.009722282774419
TYTVKIVAI	9	Unmodified	_TYTVKIVAI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.3105163574219	2	504.310418	1006.60628	1.0327	0.00052078	-0.52797	-0.00026626	0.50468	0.00025452	504.3102609387232	42.317	0.15093	42.317	42.235	42.386	0					14	7	3	0	0	0	0.19605	1	16605	16605		62.107	26.489	1	110080			45070	1212	29768	29890	45656	45656					0.10324388142510088
TYTVKIVAI	9	Unmodified	_TYTVKIVAI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.3103332519531	2	504.310418	1006.60628	1.2028	0.00060657	-0.88394	-0.00044578	0.31883	0.00016079	504.3098831045941	42.296	0.21311	42.296	42.17	42.383	0					12	5	3	0	0	0	0.46194	1	16866	16866		36.447	8.5645	1	194690			45071	1212	29768	29890	45657	45657					0.10324388142510088
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant;SYNE2|p.K677Nfs*30|1|0.44|ENSG00000054654|chr14:63983760-63983760|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.822265625	2	560.821681	1119.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.311	1	46.311	45.811	46.811	0								0	0	0	0.18645	1	17816	17816		52.937	6.9645	1				45072	1272	29769	29891	45658	45658					0.07377987540144204
TYVKDNASF	9	Unmodified	_TYVKDNASF_					0	0	0			REV__nc|ENSG00000079739|P36871-3|PGM1	REV__nc|ENSG00000079739|P36871-3|PGM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7543334960938	2	522.753464	1043.49238	1.7971	0.00093946	-1.8994	-0.00099294	-0.1023	-5.3479E-05	522.7528896029297	39.959	0.43586	39.959	39.79	40.226	0					26	15	3	0	0	0	0.41113	1	15743	15743		40.778	6.6056	1	86650	+		45073	13286	29770	29892	45659	45659					-0.027631266903881624
TYVSGMLRF	9	Unmodified	_TYVSGMLRF_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2786254882812	2	537.276052	1072.53755	3.3422	0.0017957	-0.23034	-0.00012375	3.1119	0.0016719	537.2765431620239	46.281	0.22584	46.281	46.19	46.416	0					20	10	3	0	0	0	0.12278	1	18508	18508		67.494	36.99	1	218780			45074	2682	29771	29893	45660	45660					0.004184005711749705
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2802124023438	2	522.279649	1042.54475	0.81205	0.00042412	-0.1804	-9.4221E-05	0.63165	0.0003299	522.2795542406205	39.425	0.27391	39.425	39.35	39.624	0					37	16	3	0	0	0	0.30841	1	12792	12792		49.536	19.032	1	248170			45075	3904	29772	29894	45661	45661					0.02517456443251831
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2797241210938	2	522.279649	1042.54475	0.083505	4.3613E-05	0.41277	0.00021558	0.49627	0.00025919	522.2798953992437	39.769	0.47709	39.769	39.627	40.104	0					53	18	4	0	0	0	0.085655	1	15124	15124		82.75	36.799	1	1481800			45076	3904	29772	29894	45662	45662					0.02517456443251831
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2818603515625	2	522.279649	1042.54475	0.40253	0.00021023	1.2658	0.00066112	1.6684	0.00087135	522.2802810494461	39.562	0.26527	39.562	39.438	39.704	0					24	14	2	0	0	0	0.27249	1	13263	13263		52.937	13.684	1	174940			45077	3904	29772	29894	45663	45663					0.02517456443251831
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2794799804688	2	522.279649	1042.54475	0.32549	0.00017	-0.41931	-0.000219	-0.093815	-4.8998E-05	522.2793684852313	39.533	0.19457	39.533	39.449	39.643	0					15	10	2	0	0	0	0.19605	1	13280	13280		62.107	1.1355	1	106690			45078	3904	29772	29894	45664	45664					0.02517456443251831
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2805786132812	2	522.279649	1042.54475	-0.079604	-4.1575E-05	0.19811	0.00010347	0.11851	6.1893E-05	522.2800549064051	39.728	0.34036	39.728	39.616	39.956	0					27	12	3	0	0	0	0.048471	1	15613	15613		95.815	39.094	1	597110			45079	3904	29772	29894	45665	45665					0.02517456443251831
TYVSSLGSIL	10	Unmodified	_TYVSSLGSIL_					0	0	0			REV__ENSG00000176087|ENST00000323146|SLC35A4	REV__ENSG00000176087|ENST00000323146|SLC35A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2880249023438	2	520.28714	1038.55973	1.0089	0.00052493	-0.54603	-0.00028409	0.46291	0.00024084	520.2869740142297	32.709	0.14404	32.709	32.63	32.774	0					7	4	2	0	0	0	0.52707	1	11405	11405		42.396	3.1433	1	62866	+		45080	16641	29773	29895	45666	45666					0.04198903520591557
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2958374023438	2	555.295496	1108.57644	0.58932	0.00032725	0.24554	0.00013635	0.83486	0.0004636	555.2958707677706	36.781	0.16248	36.781	36.702	36.864	0					6	4	2	0	0	0	0.30841	1	13907	13907		49.536	1.5765	1	132090			45081	3486	29774	29896	45667	45667					0.026494044065202615
TYYPLHKF	8	Unmodified	_TYYPLHKF_					0	0	0			REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	REV__FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.7782592773438	2	534.779285	1067.54402	0.55274	0.0002956	-2.5407	-0.0013587	-1.9879	-0.0010631	534.7779227588638	36.283	0.18419	36.283	36.158	36.342	0					15	10	2	0	0	0	0.76283	1	11887	11887		25.45	2.4077	1	52872	+		45082	13366	29775	29897	45668	45668					0.01294661794190688
TYYRGFLTL	9	Unmodified	_TYYRGFLTL_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3042602539062	2	567.303124	1132.5917	3.4703	0.0019687	-2.5817	-0.0014646	0.88862	0.00050412	567.301425160984	48.747	0.14241	48.747	48.689	48.832	0					9	7	2	0	0	0	0.48469	1	19353	19353		33.922	8.3476	1	48331			45083	4365	29776	29898	45669	45669					0.030703159943641367
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.7372741699219	2	447.737617	893.460681	-0.3003	-0.00013446	-0.36504	-0.00016344	-0.66535	-0.0002979	447.7374394742372	22.277	0.13489	22.277	22.183	22.318	0					11	4	3	0	0	0	0.087582	1	6249	6249		82.305	34.389	1	212650			45084	9354	29777	29899	45670	45670					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7373352050781	2	447.737617	893.460681	-0.43636	-0.00019538	0.58268	0.00026089	0.14632	6.5513E-05	447.7377689163504	22.582	0.31169	22.582	22.414	22.726	0					16	7	4	0	0	0	0.0038177	1	7351	7351		163.84	84.393	1	1207700			45085	9354	29777	29899	45671	45671					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.7373046875	2	447.737617	893.460681	-1.1742	-0.00052575	0.49909	0.00022346	-0.67516	-0.00030229	447.7378814119834	22.267	0.24445	22.267	22.2	22.445	0					16	7	3	0	0	0	0.068692	1	6517	6517		88.643	25.337	1	434560			45086	9354	29777	29899	45672	45672					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.7377014160156	2	447.737617	893.460681	-0.35948	-0.00016095	0.13958	6.2495E-05	-0.21991	-9.846E-05	447.7376545702083	22.337	0.19078	22.337	22.246	22.437	0					9	4	3	0	0	0	0.032656	1	6629	6629		106.42	53.064	1	252450			45087	9354	29777	29899	45673	45673					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.7373046875	2	447.737617	893.460681	-2.638	-0.0011811	1.768	0.0007916	-0.86997	-0.00038952	447.7384790706782	22.33	0.28389	22.33	22.233	22.517	0					16	6	4	0	0	0	0.032656	1	6624	6624		106.42	21.056	1	518960			45088	9354	29777	29899	45674	45674					0.009689253463307068
VAAAGRLA	8	Unmodified	_VAAAGRLA_					0	0	0		ENSG00000167157|ENST00000372469|PRRX2	REV__ENST00000481848.6_2_6:127836176-127837095:-|nuORF	REV__ENST00000481848.6_2_6:127836176-127837095:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.7239074707031	2	364.724313	727.434072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.204	1	21.204	20.704	21.704	0								0	0	0	1.7419	1	6105	6105		37.028	0	1				45089	5973	29778	29900	45675	45675					0.05945281245647038
VAAAHSVVL	9	Unmodified	_VAAAHSVVL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.75836181640625	2	433.758352	865.502152	-0.44841	-0.0001945	0.094181	4.0852E-05	-0.35423	-0.00015365	433.75846662689247	28.766	0.2571	28.766	28.631	28.888	0					15	6	3	0	0	0	0.068692	1	10191	10191		88.643	8.7036	1	585100			45090	3727	29779	29901	45676	45676					0.06402106105667826
VAAAHSVVL	9	Unmodified	_VAAAHSVVL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.7581787109375	2	433.758352	865.502152	0.90233	0.00039139	-1.5112	-0.00065552	-0.60892	-0.00026412	433.7577790782674	28.72	0.26511	28.72	28.613	28.878	0					10	5	3	0	0	0	0.14734	1	10571	10571		68.485	8.1907	1	500360			45091	3727	29779	29901	45677	45677					0.06402106105667826
VAAAIPKVA	9	Unmodified	_VAAAIPKVA_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.27105712890625	2	420.271096	838.527639	-0.066938	-2.8132E-05	0.2192	9.2124E-05	0.15226	6.3992E-05	420.2712464258331	30.378	0.25279	30.378	30.277	30.529	0					10	5	3	0	0	0	0.49003	1	11359	11359		33.516	0	1	121100			45092	964	29780	29902	45678	45678					0.10191580628088559
VAAARAGL	8	Unmodified	_VAAARAGL_					0	0	0		ENST00000262158.6_1_18:46476520-46476862:-|nuORF	ENST00000262158.6_1_18:46476520-46476862:-|nuORF	ENST00000262158.6_1_18:46476520-46476862:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.72412109375	2	364.724313	727.434072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.362	1	21.362	20.862	21.862	0								0	0	0	1.7419	1	7073	7073		42.474	0	1				45093	8305	29781	29903	45679	45679					0.05945281245658407
VAAAVEIKIN	10	Unmodified	_VAAAVEIKIN_					0	0	0		nc|ENSG00000163406|Q16348-2|SLC15A2;SLC15A2|p.N718Tfs*2|1|0.11|ENSG00000163406|chr3:121940965-121940965|G/-|frameshift_variant;ENSG00000163406|ENST00000489711|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.3114013671875	2	514.310949	1026.60735	-1.6104	-0.00082826	1.6871	0.00086772	0.076714	3.9455E-05	514.3120372415991	25.081	0.41295	25.081	24.758	25.171	0					12	9	2	0	0	0	0.65213	1	7930	7930		27.882	3.3631	1	96466			45094	5553	29782	29904	45680	45680					0.09510602511431898
VAAAVSQAGGK	11	Unmodified	_VAAAVSQAGGK_					0	0	0		ENST00000410030.1_1_17:73900359-73901082:-|nuORF	ENST00000410030.1_1_17:73900359-73901082:-|nuORF	ENST00000410030.1_1_17:73900359-73901082:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7688903808594	2	479.769448	957.524344	0.92188	0.00044229	-2.9959	-0.0014373	-2.074	-0.00099505	479.76833836273863	29.546	0.3579	29.546	29.291	29.648	0					20	7	3	0	0	0	0.53842	1	10847	10847		41.427	0.64845	1	545480			45095	9307	29783	29905	45681	45681					0.0438828578344328
VAADGRVEPG	10	Unmodified	_VAADGRVEPG_					0	0	0		DVL2|p.I311V|1|0.16|ENSG00000004975|chr17:7229161-7229161|T/C|missense_variant	DVL2|p.I311V|1|0.16|ENSG00000004975|chr17:7229161-7229161|T/C|missense_variant	DVL2|p.I311V|1|0.16|ENSG00000004975|chr17:7229161-7229161|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7509460449219	2	485.751256	969.487959	0.64991	0.00031569	-1.1642	-0.00056553	-0.51433	-0.00024984	485.7506157221347	19.97	0.2199	19.97	19.859	20.079	0					10	4	3	0	0	0	0.47859	1	6410	6410		47.657	1.6851	1	1796800			45096	860	29784	29906	45682	45682					0.0019940888671499124
VAADVNGPVK	10	Unmodified	_VAADVNGPVK_					0	0	0			REV__SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant	REV__SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.27166748046875	2	485.271824	968.529095	0.65725	0.00031895	-0.83612	-0.00040575	-0.17887	-8.6799E-05	485.2713257510458	20.756	0.25301	20.756	20.61	20.863	0					11	5	3	0	0	0	0.38194	1	6502	6502		58.23	1.7961	1	692250	+		45097	15492	29785	29907	45683	45683					0.04357169926197457
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2716064453125	2	497.271824	992.529095	-0.057444	-2.8565E-05	-1.0157	-0.00050506	-1.0731	-0.00053362	497.2717804677923	16.685	0.22155	16.685	16.529	16.75	0					11	7	3	0	0	0	0.012915	1	3838	3838		134.81	41.615	1	294980			45098	1749	29786	29908	45684	45684					0.03253169926188093
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2716064453125	2	497.271824	992.529095	-0.30526	-0.0001518	-0.6356	-0.00031607	-0.94086	-0.00046786	497.27181413336956	16.977	0.2563	16.977	16.846	17.102	0					13	6	3	0	0	0	0.0049871	1	4711	4711		158.07	39.332	1	2146000			45099	1749	29786	29908	45685	45685					0.03253169926188093
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2717590332031	2	497.271824	992.529095	-1.1488	-0.00057127	0.80726	0.00040143	-0.34156	-0.00016985	497.2722207525997	16.724	0.22936	16.724	16.647	16.877	0					19	9	3	0	0	0	0.012231	1	4061	4061		136.27	40.078	1	838270			45100	1749	29786	29908	45686	45686					0.03253169926188093
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2723388671875	2	497.271824	992.529095	0.16794	8.3513E-05	0.11051	5.4956E-05	0.27846	0.00013847	497.27182293467865	16.773	0.1736	16.773	16.685	16.859	0					10	5	3	0	0	0	0.0049871	1	4040	4040		158.07	39.332	1	667690			45101	1749	29786	29908	45687	45687					0.03253169926188093
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2715759277344	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.934	1	16.934	16.434	17.434	0								0	0	0	0.0089911	1	4791	4791		158.07	39.332	1				45102	1749	29786	29908	45688	45688					0.03253169926188093
VAAGISNIQ	9	Unmodified	_VAAGISNIQ_					0	0	0		CON__Q95M17;nc|ENSG00000134216|Q9BZP6-3|CHIA;nc|ENSG00000134216|Q9BZP6-2|CHIA;CHIA|p.N312Mfs*68|1|0.24|ENSG00000134216|chr1:111319135-111319135|A/-|frameshift_variant;ENSG00000134216|ENST00000369740|CHIA	CON__Q95M17	CON__Q95M17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.745361328125	2	436.745442	871.476331	0.63695	0.00027818	-0.78515	-0.00034291	-0.1482	-6.4727E-05	436.74518186529986	19.223	0.29027	19.223	19.083	19.373	0					13	6	3	0	0	0	0.1115	1	5778	5778		76.774	0	1	931080		+	45103	668	29787	29909	45689	45689					0.03545211863365694
VAAGISNIQAG	11	Unmodified	_VAAGISNIQAG_					0	0	0		CON__Q95M17	CON__Q95M17	CON__Q95M17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.77545166015625	2	500.774731	999.534909	-0.046393	-2.3232E-05	0.45863	0.00022967	0.41224	0.00020644	500.77508810910103	15.449	0.27485	15.449	15.3	15.575	0					27	11	3	0	0	0	0.46959	1	3340	3340		46.457	5.6786	1	324330		+	45104	668	29788	29910	45690	45690					0.03512268437839339
VAAGQGELK	9	Unmodified	_VAAGQGELK_					0	0	0			REV__ENST00000512894.5_3_3:134205095-134225968:+|nuORF	REV__ENST00000512894.5_3_3:134205095-134225968:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7453918457031	2	436.745442	871.476331	0.23708	0.00010354	-0.0031682	-1.3837E-06	0.23391	0.00010216	436.74556798686064	18.916	0.22365	18.916	18.789	19.013	0					10	6	2	0	0	0	0.16524	1	4789	4789		65.803	7.0212	1	66180	+		45105	19889	29789	29911	45691	45691					0.035452118633770624
VAAGQGELK	9	Unmodified	_VAAGQGELK_					0	0	0			REV__ENST00000512894.5_3_3:134205095-134225968:+|nuORF	REV__ENST00000512894.5_3_3:134205095-134225968:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.7453918457031	2	436.745442	871.476331	-0.55187	-0.00024103	0.69386	0.00030304	0.14199	6.2011E-05	436.7457910968021	19.103	0.26376	19.103	18.997	19.26	0					10	5	3	0	0	0	0.0792	1	5858	5858		84.916	5.4645	1	837790	+		45106	19889	29789	29911	45692	45692					0.035452118633770624
VAAGRRWL	8	Unmodified	_VAAGRRWL_					0	0	0			REV__nc|ENSG00000293555|Q8N8A8|FAM169BP	REV__nc|ENSG00000293555|Q8N8A8|FAM169BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7762451171875	2	464.777411	927.540269	-2.3326	-0.0010841	0.27891	0.00012963	-2.0537	-0.00095449	464.7774748891094	26.933	0.24779	26.933	26.804	27.052	0					17	6	4	0	0	0	0.66238	1	8718	8718		39.021	39.021	1	708260	+		45107	21265	29790	29912	45693	45693					0.07360036810973725
VAAGSYQRF	9	Unmodified	_VAAGSYQRF_					0	0	0		nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.7554626464844	2	499.756341	997.498129	0.32704	0.00016344	-0.25143	-0.00012566	0.075611	3.7787E-05	499.7561339324181	27.403	0.11761	27.403	27.325	27.443	0					7	4	2	0	0	0	0.25716	1	8447	8447		54.776	13.998	1	71752			45108	5384	29791	29913	45694	45694					-0.0007198338804528248
VAAGSYQRF	9	Unmodified	_VAAGSYQRF_					0	0	0		nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7565002441406	2	499.756341	997.498129	0.6664	0.00033304	-0.089696	-4.4826E-05	0.5767	0.00028821	499.7562285971929	27.628	0.17735	27.628	27.542	27.72	0					9	4	3	0	0	0	0.016683	1	9684	9684		127.46	75.163	1	511220			45109	5384	29791	29913	45695	45695					-0.0007198338804528248
VAAGSYQRF	9	Unmodified	_VAAGSYQRF_					0	0	0		nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7557373046875	2	499.756341	997.498129	0.16216	8.1041E-05	-0.12361	-6.1776E-05	0.03855	1.9265E-05	499.7560634772599	27.458	0.13092	27.458	27.374	27.505	0					5	3	2	0	0	0	0.07136	1	8996	8996		87.696	34.76	1	91737			45110	5384	29791	29913	45696	45696					-0.0007198338804528248
VAAGSYQRF	9	Unmodified	_VAAGSYQRF_					0	0	0		nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	nc|ENSG00000160783|Q6P1K2-3|PMF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7560119628906	2	499.756341	997.498129	-0.69992	-0.00034979	-0.10129	-5.0619E-05	-0.80121	-0.00040041	499.75625612830635	27.589	0.16819	27.589	27.51	27.678	0					6	3	2	0	0	0	0.037924	1	9897	9897		101.25	58.778	1	127710			45111	5384	29791	29913	45697	45697					-0.0007198338804528248
VAAHKELG	8	Unmodified	_VAAHKELG_					0	0	0			REV__ENST00000334801.7_1_11:118781174-118781492:-|nuORF	REV__ENST00000334801.7_1_11:118781174-118781492:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.735107421875	2	412.734877	823.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.671	1	17.671	17.171	18.171	0								0	0	0	1.7419	1	4454	4454		68.485	2.6815	1		+		45112	18405	29792	29914	45698	45698					0.036412465545254236
VAAISFRY	8	Unmodified	_VAAISFRY_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7574157714844	2	463.758352	925.502152	-1.0271	-0.00047631	-1.0854	-0.00050335	-2.1124	-0.00097967	463.7578460586925	20.855	0.16599	20.855	20.747	20.913	0					5	3	2	0	0	0	0.70055	1	6835	6835		33.516	1.5607	1	593540	+		45113	13017	29793	29915	45699	45699					0.036421061056557846
VAAKHIKQLE	10	Unmodified	_VAAKHIKQLE_					0	0	0			REV__ENST00000344693.5_1_21:15326407-15352225:-|nuORF	REV__ENST00000344693.5_1_21:15326407-15352225:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.5643615722656	3	379.564391	1135.67134	-0.13312	-5.0527E-05	0.069301	2.6304E-05	-0.063818	-2.4223E-05	379.5644564805626	22.386	0.10328	22.386	22.333	22.437	0					6	2	3	0	0	0	0.65051	1	6669	6669		28.081	4.5588	1	182240	+		45114	18476	29794	29916	45700	45700					0.10893382668336926
VAAKPVATK	9	Unmodified	_VAAKPVATK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.78253173828125	2	442.781828	883.549102	-0.28988	-0.00012835	-0.16805	-7.4408E-05	-0.45792	-0.00020276	442.7817222482457	14.083	0.10713	14.083	14.032	14.139	0					9	5	2	0	0	0	0.02953	1	2842	2842		109.48	35.223	1	163380			45115	5547	29795	29917	45701	45701					0.10266965656796856
VAAKPVATK	9	Unmodified	_VAAKPVATK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7814636230469	2	442.781828	883.549102	-0.34527	-0.00015288	-0.38578	-0.00017082	-0.73105	-0.0003237	442.78169228828966	14.415	0.17005	14.415	14.366	14.536	0					10	4	4	0	0	0	0.0049871	1	3508	3508		158.07	61.884	1	1761900			45116	5547	29795	29917	45702	45702					0.10266965656796856
VAAKPVATK	9	Unmodified	_VAAKPVATK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.7815856933594	2	442.781828	883.549102	-1.0534	-0.00046641	1.1283	0.00049957	0.074901	3.3165E-05	442.78241750551047	14.1	0.10353	14.1	14.038	14.142	0					9	5	2	0	0	0	0.032052	1	2992	2992		107.01	40.578	1	193230			45117	5547	29795	29917	45703	45703					0.10266965656796856
VAAKPVATK	9	Unmodified	_VAAKPVATK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G3016Vfs*19|1|0.34|ENSG00000163359|chr2:237334810-237334810|G/-|frameshift_variant;COL6A3|p.A2956Lfs*45|1|0.33|ENSG00000163359|chr2:237336234-237336234|C/-|frameshift_variant;COL6A3|p.A2957Lfs*44|1|0.33|ENSG00000163359|chr2:237336232-237336232|A/-|frameshift_variant;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7815246582031	2	442.781828	883.549102	0.048382	2.1423E-05	-0.6042	-0.00026753	-0.55582	-0.00024611	442.78149877599037	14.357	0.2431	14.357	14.251	14.494	0					8	5	3	0	0	0	0.013878	1	3712	3712		132.76	26.343	1	1431800			45118	5547	29795	29917	45704	45704					0.10266965656796856
VAAKRKIELN	10	Unmodified	_VAAKRKIELN_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17099415-17121458:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.2398376464844	3	381.239907	1140.69789	0.14178	5.4053E-05	-0.21824	-8.3201E-05	-0.076457	-2.9148E-05	381.23977355999443	26.182	0.25664	26.182	26.07	26.326	0					13	6	3	0	0	0	0.69166	1	9018	9018		21.686	0	1	440830			45119	1050	29796	29918	45705	45705					0.13317071559686156
VAALAEAQDI	10	Unmodified	_VAALAEAQDI_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant;DNAH9|p.P2650Hfs*2|2|0.29|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;DNAH9|p.N816Tfs*3|1|0.34|ENSG00000007174|chr17:11652851-11652851|A/-|frameshift_variant;DNAH9|p.K1203Rfs*6|1|0.24|ENSG00000007174|chr17:11680749-11680749|A/-|frameshift_variant	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.76934814453125	2	500.769114	999.523675	0.1529	7.6567E-05	-0.26623	-0.00013332	-0.11333	-5.6751E-05	500.7690334995669	35.029	0.27532	35.029	34.89	35.165	0					13	8	2	0	0	0	0.43008	1	12454	12454		52.937	2.9032	1	229740			45120	997	29797	29919	45706	45706					0.0238944634369318
VAALASGPPS	10	Unmodified	_VAALASGPPS_					0	0	0			REV__ENSG00000160113|ENST00000291442|NR2F6	REV__ENSG00000160113|ENST00000291442|NR2F6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.24005126953125	2	435.239993	868.465432	0.086096	3.7472E-05	-0.49743	-0.0002165	-0.41134	-0.00017903	435.23971933338777	20.313	0.60626	20.313	20.078	20.685	0					32	13	4	0	0	0	0.4943	1	6204	6204		45.952	1.8352	1	3423700	+		45121	15735	29798	29920	45707	45707					0.025938094890989305
VAALELNKL	9	Unmodified	_VAALELNKL_					0	0	0			REV__ENST00000463052.5_1_1:29528537-29543205:-|nuORF	REV__ENST00000463052.5_1_1:29528537-29543205:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.79998779296875	2	485.800217	969.585882	0.67512	0.00032797	-1.1225	-0.00054531	-0.44739	-0.00021734	485.7998394893754	33.088	1.8801	33.088	32.625	34.505	0					161	49	6	0	0	0	0.1115	1	12602	12602		76.774	7.9873	1	143600000	+		45122	14142	29799	29921	45708	45708					0.09987217482705546
VAALGAVG	8	Unmodified	_VAALGAVG_					0	0	0		ENST00000005340.9_1_17:7137535-7137610:-|nuORF	ENST00000005340.9_1_17:7137535-7137610:-|nuORF	ENST00000005340.9_1_17:7137535-7137610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.20135498046875	2	329.200139	656.385725	3.0027	0.00098849	1.1501	0.00037861	4.1528	0.0013671	329.2005012481867	36.956	0.50294	36.956	36.846	37.349	0					14	10	2	0	0	0	0.78431	1	14416	14416		10.185	0	1	310650			45123	8136	29800	29922	45709	45709					0.043787876057649555
VAALGLPLLPA	11	Unmodified	_VAALGLPLLPA_					0	0	0		ENST00000453527.6_1_8:11710880-11725540:-|nuORF;ENST00000534510.5_1_8:11710880-11725540:-|nuORF	ENST00000453527.6_1_8:11710880-11725540:-|nuORF	ENST00000453527.6_1_8:11710880-11725540:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.8338012695312	2	517.83406	1033.65357	0.42881	0.00022205	0.055078	2.8521E-05	0.48389	0.00025057	517.8339952837518	34.01	0.65263	34.01	33.911	34.564	0					77	29	5	0	0	0	0.53842	1	11206	11206		31.955	0.42505	1	4279700			45124	9670	29801	29923	45710	45710					0.13808667413536568
VAALLLAAGPG	11	Unmodified	_VAALLLAAGPG_					0	0	0		IGFBP4|p.V42Wfs*52|2|0.41|ENSG00000141753|chr17:40443852-40443852|C/-|frameshift_variant;ENSG00000141753|ENST00000269593|IGFBP4	IGFBP4|p.V42Wfs*52|2|0.41|ENSG00000141753|chr17:40443852-40443852|C/-|frameshift_variant	IGFBP4|p.V42Wfs*52|2|0.41|ENSG00000141753|chr17:40443852-40443852|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7945861816406	2	476.794935	951.575317	0.37315	0.00017792	-0.8949	-0.00042668	-0.52175	-0.00024877	476.7946735074307	33.083	0.48561	33.083	32.786	33.272	0					18	13	2	0	0	0	0.42078	1	12154	12154		50.025	0	1	521740			45125	4471	29802	29924	45711	45711					0.09759234828277386
VAALLPAAAR	10	Unmodified	_VAALLPAAAR_					0	0	0		ENST00000352681.7_2_16:727083-728243:+|nuORF	ENST00000352681.7_2_16:727083-728243:+|nuORF	ENST00000352681.7_2_16:727083-728243:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.7999267578125	2	476.800552	951.58655	-0.36092	-0.00017208	-0.21159	-0.00010088	-0.5725	-0.00027297	476.800486415421	35.252	0.17863	35.252	35.153	35.332	0					10	6	2	0	0	0	0.42631	1	12559	12559		53.351	5.4358	1	65717			45126	8776	29803	29925	45712	45712					0.10882056922412175
VAALSVKSAI	10	Unmodified	_VAALSVKSAI_					0	0	0			REV__ABCB5|p.G292A|1|0.35|ENSG00000004846|chr7:20646032-20646032|G/C|missense_variant	REV__ABCB5|p.G292A|1|0.35|ENSG00000004846|chr7:20646032-20646032|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.7998046875	2	479.800217	957.585882	-0.65362	-0.00031361	0.01678	8.0512E-06	-0.63684	-0.00030555	479.80014119172864	23.192	0.16751	23.192	23.084	23.252	0					6	3	2	0	0	0	0.59277	1	7841	7841		35.152	2.3396	1	258560	+		45127	12035	29804	29926	45713	45713					0.1053921748269886
VAALWEKLS	9	Unmodified	_VAALWEKLS_					0	0	0		ENST00000478383.5_1_3:160821891-160822176:-|nuORF;ENST00000460353.1_1_3:160821276-160822176:-|nuORF;ENST00000320474.8_1_3:160821276-160822176:-|nuORF	ENST00000478383.5_1_3:160821891-160822176:-|nuORF	ENST00000478383.5_1_3:160821891-160822176:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.79217529296875	2	508.792392	1015.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.35	1	42.35	41.85	42.85	0								0	0	0	0.3245	1	16048	16048		30.318	3.6248	1				45128	8611	29805	29927	45714	45714					0.06306930965661195
VAAPASIG	8	Unmodified	_VAAPASIG_					0	0	0			REV__ENST00000330753.5_1_14:85996623-86087491:+|nuORF	REV__ENST00000330753.5_1_14:85996623-86087491:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.1987609863281	2	343.197596	684.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.531	1	29.531	29.031	30.031	0								0	0	0	1.7419	1	10557	10557		5.0869	0	1		+		45129	18380	29806	29928	45715	45715					0.025824837431514425
VAAPRPPQ	8	Unmodified	_VAAPRPPQ_					0	0	0		ENST00000398204.8_1_7:87563626-87563767:+|nuORF	ENST00000398204.8_1_7:87563626-87563767:+|nuORF	ENST00000398204.8_1_7:87563626-87563767:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.2428283691406	2	418.24287	834.471186	-2.4509	-0.0010251	2.094	0.00087579	-0.35692	-0.00014928	418.243701741628	20.595	0.18127	20.595	20.463	20.644	0					6	4	2	0	0	0	0.74117	1	5831	5831		28.254	2.8041	1	89213			45130	9230	29807	29929	45716	45716					0.04732952791414391
VAAQNGIL	8	Unmodified	_VAAQNGIL_					0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	393.22918701171875	2	393.229428	784.444303	-1.2526	-0.00049258	0.82567	0.00032468	-0.42698	-0.0001679	393.22982127885814	23.495	0.31465	23.495	23.304	23.619	0					20	11	2	0	0	0	0.527	1	7059	7059		57.453	1.9484	1	85839			45131	3307	29808	29930	45717	45717					0.043458441802386005
VAASFLSFK	9	Unmodified	_VAASFLSFK_					0	0	0			REV__ENSG00000164051|ENST00000395694|CCDC51	REV__ENSG00000164051|ENST00000395694|CCDC51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.27166748046875	2	485.273835	968.533118	0.65625	0.00031846	-3.7461	-0.0018179	-3.0898	-0.0014994	485.2723750232216	20.67	0.3179	20.67	20.562	20.88	0					9	6	2	0	0	0	0.26904	1	6750	6750		53.351	0.41475	1	423390	+		45132	15952	29809	29931	45718	45718					0.04759259419893169
VAASLGAP	8	Unmodified	_VAASLGAP_					0	0	0			REV__ENST00000514148.1_1_4:159603282-159605833:+|nuORF	REV__ENST00000514148.1_1_4:159603282-159605833:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.1988220214844	2	343.197596	684.38064	3.6496	0.0012525	-0.32926	-0.000113	3.3204	0.0011395	343.19747369245863	27.743	0.13121	27.743	27.651	27.782	0					7	4	2	0	0	0	0.79293	1	8873	8873		15.636	0	1	53919	+		45133	16415	29810	29932	45719	45719					0.02582483743128705
VAASLQALK	9	Unmodified	_VAASLQALK_					0	0	0		nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9|HEATR5A	nc|ENSG00000129493|Q86XA9|HEATR5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7790222167969	2	450.779285	899.544017	0.69103	0.0003115	-1.5007	-0.00067646	-0.80963	-0.00036496	450.7786722111353	34.966	0.21883	34.966	34.892	35.111	0					12	6	3	0	0	0	0.1115	1	13529	13529		76.774	2.5191	1	158790			45134	3600	29811	29933	45720	45720					0.09022661794176656
VAASNVPVPG	10	Unmodified	_VAASNVPVPG_					0	0	0			REV__ENST00000505447.5_1_4:7765494-7780765:-|nuORF	REV__ENST00000505447.5_1_4:7765494-7780765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.7529296875	2	455.753267	909.491981	0.73792	0.00033631	-1.3551	-0.00061757	-0.61714	-0.00028126	455.75273723244635	29.533	0.25999	29.533	29.406	29.666	0					15	6	3	0	0	0	0.39566	1	10547	10547		56.721	3.3696	1	504880	+		45135	17263	29812	29934	45721	45721					0.03361498380422745
VAASRVGLA	9	Unmodified	_VAASRVGLA_					0	0	0		ENST00000517894.5_3_8:143558624-143561092:+|nuORF	ENST00000517894.5_3_8:143558624-143561092:+|nuORF	ENST00000517894.5_3_8:143558624-143561092:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.25848388671875	2	422.255977	842.497401	0.37765	0.00015946	-0.74122	-0.00031298	-0.36357	-0.00015352	422.255800221044	24.999	0.17623	24.999	24.92	25.096	0					22	5	5	0	0	0	0.25109	1	7497	7497		55.504	2.1528	1	672350			45136	10275	29813	29935	45722	45722					0.06985221962895594
VAAVRFGAAL	10	Unmodified	_VAAVRFGAAL_					0	0	0		ENST00000554456.1_1_14:58711654-58711926:+|nuORF	ENST00000554456.1_1_14:58711654-58711926:+|nuORF	ENST00000554456.1_1_14:58711654-58711926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.79248046875	2	487.792727	973.5709	-0.21656	-0.00010564	0.45433	0.00022162	0.23777	0.00011598	487.79293666774015	25.5	0.40315	25.5	25.386	25.789	0					19	10	3	0	0	0	0.47621	1	8099	8099		47.916	3.7988	1	314770			45137	10647	29814	29936	45723	45723					0.08305770405377189
VAAVSLGILAG	11	Unmodified	_VAAVSLGILAG_					0	0	0			REV__ENST00000424164.1_1_1:53099333-53133078:+|nuORF	REV__ENST00000424164.1_1_1:53099333-53133078:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.8011169433594	2	485.800217	969.585882	-0.023699	-1.1513E-05	1.0281	0.00049947	1.0044	0.00048796	485.8009318140328	34.475	0.45507	34.475	34.344	34.799	0					27	20	3	0	0	0	0.31478	1	11283	11283		60.972	11.436	1	127450	+		45138	16872	29815	29937	45724	45724					0.09987217482705546
VAAWLPWL	8	Unmodified	_VAAWLPWL_					0	0	0			REV__ENSG00000258429|ENST00000288022|PDF	REV__ENSG00000258429|ENST00000288022|PDF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2730407714844	2	478.273638	954.532724	-0.32504	-0.00015546	-1.0034	-0.0004799	-1.3284	-0.00063535	478.27326837381867	19.664	0.25836	19.664	19.535	19.794	0					10	6	2	0	0	0	0.42924	1	5373	5373		67.327	0.89792	1	511530	+		45139	17767	29816	29938	45725	45725					0.053638844907027305
VAAWPTPL	8	Unmodified	_VAAWPTPL_					0	0	0			REV__IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant	REV__IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.7400817871094	2	427.742171	853.469789	-2.7567	-0.0011792	-1.8744	-0.00080176	-4.6311	-0.0019809	427.7414526213245	20.546	0.17684	20.546	20.422	20.599	0					6	4	2	0	0	0	0.67475	1	5811	5811		37.028	0	1	61917	+		45140	20766	29817	29939	45726	45726					0.03719318702644614
VACGSAHTL	9	Carbamidomethyl (C)	_VAC(Carbamidomethyl (C))GSAHTL_	VAC(1)GSAHTL		VAC(53)GSAHTL		0	1	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.N4304S|1|0.12|ENSG00000128731|chr15:28125085-28125085|T/C|missense_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2216491699219	2	458.221277	914.428001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.266	1	20.266	19.766	20.766	0								0	0	0	0.1836	1	5394	5394		53.351	6.585	1				45141	3560	29818	29940	45727	45727	150				-0.03263605048164209
VACGSAHTL	9	Carbamidomethyl (C)	_VAC(Carbamidomethyl (C))GSAHTL_	VAC(1)GSAHTL		VAC(79)GSAHTL		0	1	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.N4304S|1|0.12|ENSG00000128731|chr15:28125085-28125085|T/C|missense_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2207946777344	2	458.221277	914.428001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.643	1	20.643	20.143	21.143	0								0	0	0	0.073265	1	6438	6438		79.451	10.966	1				45142	3560	29818	29940	45728	45728	150				-0.03263605048164209
VACGSAHTL	9	Carbamidomethyl (C)	_VAC(Carbamidomethyl (C))GSAHTL_	VAC(1)GSAHTL		VAC(85)GSAHTL		0	1	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.N4304S|1|0.12|ENSG00000128731|chr15:28125085-28125085|T/C|missense_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2216796875	2	458.221277	914.428001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.38	1	20.38	19.88	20.88	0								0	0	0	0.053019	1	5719	5719		85.359	19.556	1				45143	3560	29818	29940	45729	45729	150				-0.03263605048164209
VACGSAHTL	9	Carbamidomethyl (C)	_VAC(Carbamidomethyl (C))GSAHTL_	VAC(1)GSAHTL		VAC(82)GSAHTL		0	1	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.N4304S|1|0.12|ENSG00000128731|chr15:28125085-28125085|T/C|missense_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2209777832031	2	458.221277	914.428001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.564	1	20.564	20.064	21.064	0								0	0	0	0.063485	1	6552	6552		82.305	24.494	1				45144	3560	29818	29940	45730	45730	150				-0.03263605048164209
VACTRAAAR	9	Unmodified	_VACTRAAAR_					0	0	0			REV__ENST00000305943.7_2_1:228674775-228674919:+|nuORF	REV__ENST00000305943.7_2_1:228674775-228674919:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.74847412109375	2	459.750536	917.486519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.852	1	15.852	15.352	16.352	0								0	0	0	0.3304	1	3693	3693		29.15	1.2673	1		+		45145	18240	29819	29941	45731	45731					0.02447496316960951
VADKPQTEFL	10	Unmodified	_VADKPQTEFL_					0	0	0		TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant;nc|ENSG00000177238|Q6ZMU5-2|TRIM72;ENSG00000177238|ENST00000322122|TRIM72	TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant	TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.2032165527344	3	383.20464	1146.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.095	1	15.095	14.595	15.595	0								0	0	0	0.31444	1	3904	3904		48.602	2.1448	1				45146	23066	29820	29942	45732	45732					0.024656909235773128
VADNRIITL	9	Unmodified	_VADNRIITL_					0	0	0		RUFY3|p.N303D|1|0.27|ENSG00000018189|chr4:70783103-70783103|A/G|missense_variant	RUFY3|p.N303D|1|0.27|ENSG00000018189|chr4:70783103-70783103|A/G|missense_variant	RUFY3|p.N303D|1|0.27|ENSG00000018189|chr4:70783103-70783103|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.86956787109375	3	338.869591	1013.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.436	1	17.436	16.936	17.936	0								0	0	0	0.3428	1	4368	4368		20.837	0	1				45147	22366	29821	29943	45733	45733					0.08069431851606623
VADPETRTV	9	Unmodified	_VADPETRTV_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF;ENST00000595792.1_1_19:50369586-50370764:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.25860595703125	2	494.258914	986.503274	-0.067061	-3.3145E-05	-0.19789	-9.7809E-05	-0.26495	-0.00013095	494.258708790054	22.431	0.32353	22.431	22.27	22.594	0					21	9	3	0	0	0	0.21419	1	6316	6316		59.931	12.015	1	342950			45148	1189	29822	29944	45734	45734					0.009482756839020112
VADPETRTV	9	Unmodified	_VADPETRTV_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF;ENST00000595792.1_1_19:50369586-50370764:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.25927734375	2	494.258914	986.503274	-0.4523	-0.00022355	0.12999	6.4247E-05	-0.32231	-0.0001593	494.2590023602349	22.798	0.46739	22.798	22.501	22.969	0					33	11	4	0	0	0	0.28504	1	7396	7396		51.528	8.6635	1	1835900			45149	1189	29822	29944	45735	45735					0.009482756839020112
VADPETRTV	9	Unmodified	_VADPETRTV_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF;ENST00000595792.1_1_19:50369586-50370764:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2588195800781	2	494.258914	986.503274	0.047929	2.3689E-05	-0.72252	-0.00035711	-0.6746	-0.00033342	494.25857363489183	22.567	0.46021	22.567	22.29	22.75	0					27	10	4	0	0	0	0.24169	1	6732	6732		56.632	8.6727	1	713210			45150	1189	29822	29944	45736	45736					0.009482756839020112
VADPETRTV	9	Unmodified	_VADPETRTV_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF;ENST00000595792.1_1_19:50369586-50370764:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.25872802734375	2	494.258914	986.503274	0.90093	0.00044529	-1.1387	-0.00056283	-0.23781	-0.00011754	494.2584338253534	22.681	0.7124	22.681	22.421	23.133	0					34	14	4	0	0	0	0.14578	1	7564	7564		68.846	17.511	1	3615900			45151	1189	29822	29944	45737	45737					0.009482756839020112
VADPVVAR	8	Unmodified	_VADPVVAR_					0	0	0			REV__ATP1A1|p.A598V|1|0.17|ENSG00000163399|chr1:116395242-116395242|C/T|missense_variant	REV__ATP1A1|p.A598V|1|0.17|ENSG00000163399|chr1:116395242-116395242|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	413.74249267578125	2	413.742702	825.470852	1.0296	0.00042598	-0.58408	-0.00024166	0.44549	0.00018432	413.7421417963624	33.382	0.28847	33.382	33.22	33.508	0					10	7	2	0	0	0	0.72381	1	12370	12370		30.504	0	1	42692	+		45152	12252	29823	29945	45738	45738					0.05113533071562415
VADQCHGLR	9	Unmodified	_VADQCHGLR_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.4994812011719	3	333.499392	997.476348	0.65089	0.00021707	-0.4627	-0.00015431	0.18819	6.2761E-05	333.49928109059323	12.474	0.10157	12.474	12.411	12.513	0					6	3	2	0	0	0	0.61124	1	2642	2642		19.997	0	1	124250			45153	965	29824	29946	45739	45739					-0.022491114082754393
VADRDQALK	9	Unmodified	_VADRDQALK_					0	0	0			REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|34|2|sense	REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|34|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2802429199219	2	508.28018	1014.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.54	1	17.54	17.04	18.04	0								0	0	0	0.36609	1	5227	5227		20.947	2.6848	1		+		45154	20820	29825	29947	45740	45740					0.03911670812124157
VADRQVMH	8	Oxidation (M)	_VADRQVM(Oxidation (M))H_		VADRQVM(1)H		VADRQVM(46)H	0	0	1			REV__nc|ENSG00000079785|Q92499-2|DDX1	REV__nc|ENSG00000079785|Q92499-2|DDX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2401123046875	2	486.240001	970.465449	-1.2406	-0.00060325	1.4683	0.00071393	0.22763	0.00011068	486.2407808350602	18.181	0.084398	18.181	18.125	18.209	0					9	3	3	0	0	0	0.61938	1	4703	4703		45.952	7.1458	1	114380	+		45155	20941	29826	29948	45741	45741		749			-0.02096513782544207
VADSSLAL	8	Unmodified	_VADSSLAL_					0	0	0		ENST00000577698.1_1_17:66243842-66243974:-|nuORF	ENST00000577698.1_1_17:66243842-66243974:-|nuORF	ENST00000577698.1_1_17:66243842-66243974:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	388.2120361328125	2	388.213443	774.412334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.804	1	33.804	33.304	34.304	0								0	0	0	1.7419	1	11368	11368		29.842	0	1				45156	10843	29827	29949	45742	45742					0.01610431706410509
VADTVARVL	9	Unmodified	_VADTVARVL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2817687988281	2	472.282192	942.549831	0.21352	0.00010084	-1.0753	-0.00050786	-0.8618	-0.00040701	472.28160965527866	33.885	0.52884	33.885	33.739	34.268	0					34	14	5	0	0	0	0.095583	1	12548	12548		80.455	21.673	1	3210700			45157	4680	29828	29950	45743	45743					0.0762576030585933
VADTVARVL	9	Unmodified	_VADTVARVL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2821044921875	2	472.282192	942.549831	-1.4538	-0.00068662	0.57187	0.00027009	-0.88197	-0.00041654	472.282342851153	33.652	0.47066	33.652	33.565	34.036	0					32	18	3	0	0	0	0.048471	1	11293	11293		95.815	21.56	1	934970			45158	4680	29828	29950	45744	45744					0.0762576030585933
VADTVARVL	9	Unmodified	_VADTVARVL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2784118652344	2	472.282192	942.549831	-0.54141	-0.0002557	-1.9183	-0.00090599	-2.4597	-0.0011617	472.2806785679256	33.61	0.60683	33.61	33.33	33.936	0					31	17	3	0	0	0	0.11898	1	11794	11794		75.043	18.322	1	586320			45159	4680	29828	29950	45745	45745					0.0762576030585933
VADTVARVL	9	Unmodified	_VADTVARVL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2816467285156	2	472.282192	942.549831	0.61472	0.00029032	-1.5973	-0.0007544	-0.98263	-0.00046408	472.2814100741314	33.808	0.46357	33.808	33.732	34.196	0					28	10	4	0	0	0	0.026538	1	12883	12883		112.41	35.637	1	5102100			45160	4680	29828	29950	45746	45746					0.0762576030585933
VADWLALVL	9	Unmodified	_VADWLALVL_					0	0	0			REV__ENSG00000173456|ENST00000311413|RNF26	REV__ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2956237792969	2	500.29731	998.580068	-1.0138	-0.00050722	-3.1029	-0.0015524	-4.1167	-0.0020596	500.2958411426521	31.538	0.13897	31.538	31.477	31.616	0					8	5	2	0	0	0	0.51817	1	10490	10490		30.504	1.3336	1	43467	+		45161	16511	29829	29951	45747	45747					0.08072118971040254
VAEALRAPRA	10	Unmodified	_VAEALRAPRA_					0	0	0		ENST00000485587.1_1_22:37419962-37421138:+|nuORF;nc|ENSG00000128309|P25325|MPST;ENSG00000128309|ENST00000429360|MPST	ENST00000485587.1_1_22:37419962-37421138:+|nuORF	ENST00000485587.1_1_22:37419962-37421138:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.876953125	3	351.876969	1052.60908	1.4484	0.00050967	-2.4543	-0.0008636	-1.0058	-0.00035393	351.87587200516714	22.014	1.1107	22.014	21.256	22.367	0					37	22	5	0	0	0	0.64162	1	7399	7399		29.17	0.020503	1	4406600			45162	10008	29830	29952	45748	45748					0.08487656320016868
VAEEGLAAQ	9	Unmodified	_VAEEGLAAQ_					0	0	0			REV__nc|ENSG00000258992|Q01534-2|TSPY1	REV__nc|ENSG00000258992|Q01534-2|TSPY1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2266540527344	2	444.227082	886.439611	-0.47968	-0.00021309	-0.054181	-2.4069E-05	-0.53386	-0.00023716	444.227006313194	16.593	0.81581	16.593	15.947	16.763	0					30	16	3	0	0	0	0.20551	1	4597	4597		60.972	0	1	358610	+		45163	16277	29831	29953	45749	45749					-0.008150847531965155
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7801513671875	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.969	1	25.969	25.469	26.469	0								0	0	0	0.066158	1	7838	7838		81.525	21.407	1				45164	5163	29832	29954	45750	45750					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.7805786132812	2	515.780013	1029.54547	0.21877	0.00011284	-0.53744	-0.0002772	-0.31867	-0.00016436	515.7790773890835	26.059	0.35635	26.059	25.898	26.254	0					23	12	2	0	0	0	0.36892	1	7835	7835		44.377	7.9304	1	152780			45165	5163	29832	29954	45751	45751					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2683715820312	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.198	1	26.198	25.698	26.698	0								0	0	0	0.058887	1	9008	9008		83.647	8.6037	1				45166	5163	29832	29954	45752	45752					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7799682617188	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.228	1	26.228	25.728	26.728	0								0	0	0	0.018495	1	9022	9022		101.46	32.673	1				45167	5163	29832	29954	45753	45753					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.78076171875	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.953	1	25.953	25.453	26.453	0								0	0	0	0.051298	1	8101	8101		85.862	8.5442	1				45168	5163	29832	29954	45754	45754					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7799072265625	2	515.780013	1029.54547	1.4358	0.00074055	-0.064899	-3.3474E-05	1.3709	0.00070708	515.7796296793437	26.223	0.25878	26.223	26.117	26.376	0					9	5	3	0	0	0	0.026848	1	9351	9351		112.11	37.852	1	7279900			45169	5163	29832	29954	45755	45755					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7804565429688	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.027	1	26.027	25.527	26.527	0								0	0	0	0.015103	1	8320	8320		104.01	34.386	1				45170	5163	29832	29954	45756	45756					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.780029296875	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.046	1	26.046	25.546	26.546	0								0	0	0	0.11963	1	8329	8329		66.962	3.4281	1				45171	5163	29832	29954	45757	45757					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7803955078125	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.161	1	26.161	25.661	26.661	0								0	0	0	0.0016356	1	9208	9208		123.21	13.73	1				45172	5163	29832	29954	45758	45758					0.03188251092274186
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7801513671875	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.156	1	26.156	25.656	26.656	0								0	0	0	0.0052769	1	9206	9206		114.89	32.654	1				45173	5163	29832	29954	45759	45759					0.03188251092274186
VAEESRQVL	9	Unmodified	_VAEESRQVL_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7804565429688	2	515.780013	1029.54547	0.032821	1.6928E-05	1.0888	0.00056159	1.1216	0.00057852	515.7793087101079	26.36	0.38142	26.36	26.154	26.535	0					20	9	3	0	0	0	0.24334	1	9038	9038		56.434	5.2411	1	1013600			45174	2113	29833	29955	45760	45760					0.03188251092274186
VAEPFEPN	8	Unmodified	_VAEPFEPN_					0	0	0			REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	REV__SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7160949707031	2	451.71635	901.418148	0.4118	0.00018602	-1.058	-0.00047793	-0.64622	-0.00029191	451.7158478638687	23.769	0.23046	23.769	23.685	23.915	0					12	5	3	0	0	0	0.58597	1	7317	7317		51.335	1.8939	1	349190	+		45175	14925	29834	29956	45761	45761					-0.036504697819054854
VAEQKKFSD	9	Unmodified	_VAEQKKFSD_					0	0	0			REV__ENSG00000099308|ENST00000687212|MAST3	REV__ENSG00000099308|ENST00000687212|MAST3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.77685546875	2	526.274564	1050.53457	0.44766	0.00023559	0.59901	0.00031525	1.0467	0.00055084	526.7767492486291	23.172	0.094353	23.172	23.092	23.187	0					5	3	2	0	0	0	0.54267	1	6920	6920		27.882	0.83493	1	87336	+		45176	13491	29835	29957	45762	45762					0.011328487180207958
VAFLLAQAT	9	Unmodified	_VAFLLAQAT_					0	0	0		ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2734375	2	467.273835	932.533118	0.61428	0.00028704	-2.1481	-0.0010037	-1.5338	-0.0007167	467.27325270707763	35.065	1.0091	35.065	34.474	35.484	0					62	20	4	0	0	0	0.35045	1	13589	13589		45.952	0	1	1909500			45177	4899	29836	29958	45763	45763					0.06415259419895847
VAFNPFLIPG	10	Unmodified	_VAFNPFLIPG_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000480022.1_1_20:40033235-40042188:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.80517578125	2	537.80276	1073.59097	3.3476	0.0018003	0.42657	0.00022941	3.7741	0.0020297	537.8029568110461	11.781	0.13283	11.781	11.698	11.831	0					15	6	3	0	0	0	0.69544	1	2339	2339		11.511	3.2797	1	459510			45178	3352	29837	29959	45764	45764					0.057115213453243996
VAFPESINLAK	11	Unmodified	_VAFPESINLAK_					0	0	0			REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant	REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.835205078125	2	594.834788	1187.65502	1.631	0.0009702	-1.7701	-0.0010529	-0.13906	-8.2718E-05	594.834029613895	41.106	0.18127	41.106	41.016	41.198	0					8	4	2	0	0	0	0.44903	1	16342	16342		47.96	13.787	1	93424	+		45179	12205	29838	29960	45765	45765					0.06870256711590628
VAFVHTHQ	8	Unmodified	_VAFVHTHQ_					0	0	0			REV__ENSG00000250673|ENST00000623665|REELD1	REV__ENSG00000250673|ENST00000623665|REELD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.74737548828125	2	469.745776	937.477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.876	1	19.876	19.376	20.376	0								0	0	0	1.7419	1	6355	6355		68.485	13.72	1		+		45180	17730	29839	29961	45766	45766					0.005760513030963921
VAFVQALGFLP	11	Unmodified	_VAFVQALGFLP_					0	0	0		ENST00000274376.10_1_5:86563995-86564106:+|nuORF	ENST00000274376.10_1_5:86563995-86564106:+|nuORF	ENST00000274376.10_1_5:86563995-86564106:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.893310546875	3	387.893737	1160.65938	-0.037413	-1.4512E-05	-0.05015	-1.9453E-05	-0.087563	-3.3965E-05	387.89366321595196	33.256	0.48649	33.256	32.969	33.456	0					26	13	3	0	0	0	0.70609	1	12271	12271		27.047	1.9213	1	372560			45181	8395	29840	29962	45767	45767					0.08547765925186468
VAGAAARSHGQ	11	Unmodified	_VAGAAARSHGQ_					0	0	0		ENST00000390645.2_1_2:235405210-235405255:-|nuORF	ENST00000390645.2_1_2:235405210-235405255:-|nuORF	ENST00000390645.2_1_2:235405210-235405255:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7664184570312	2	512.767771	1023.52099	0.0081114	4.1593E-06	-1.6721	-0.00085741	-1.664	-0.00085325	512.7670191577948	32.299	0.3304	32.299	32.212	32.543	0					12	8	2	0	0	0	0.62108	1	11850	11850		35.152	3.1972	1	335470			45182	9138	29841	29963	45768	45768					0.010170357294214227
VAGAATPKK	9	Unmodified	_VAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7581787109375	2	421.758352	841.502152	-0.89661	-0.00037815	0.6736	0.0002841	-0.22301	-9.4055E-05	421.7585811596947	13.414	0.24	13.414	13.216	13.456	0					12	6	3	0	0	0	0.21263	1	3053	3053		60.118	10.677	1	240440			45183	3386	29842	29964	45769	45769					0.07506106105654453
VAGAATPKK	9	Unmodified	_VAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.7586364746094	2	421.758352	841.502152	-1.222	-0.00051537	1.8284	0.00077113	0.6064	0.00025576	421.7591700980474	13.19	0.082996	13.19	13.127	13.21	0					6	4	2	0	0	0	0.10915	1	2694	2694		77.318	22.423	1	33754			45184	3386	29842	29964	45770	45770					0.07506106105654453
VAGAATPKK	9	Unmodified	_VAGAATPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7582702636719	2	421.758352	841.502152	0.85122	0.00035901	-0.97567	-0.0004115	-0.12445	-5.2486E-05	421.7579045752246	13.393	0.37291	13.393	13.144	13.517	0					17	8	3	0	0	0	0.021961	1	3239	3239		118.74	49.956	1	354130			45185	3386	29842	29964	45771	45771					0.07506106105654453
VAGAEIPS	8	Unmodified	_VAGAEIPS_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.20147705078125	2	372.200336	742.386119	2.6298	0.00097881	0.96283	0.00035837	3.5926	0.0013372	372.2005903159101	30.581	0.36149	30.581	30.485	30.847	0					34	14	3	0	0	0	0.72892	1	9743	9743		29.842	0	1	552770			45186	4539	29843	29965	45772	45772					0.004621625349614078
VAGAEIPS	8	Unmodified	_VAGAEIPS_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.2014465332031	2	372.200336	742.386119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.258	1	31.258	30.758	31.758	0								0	0	0	1.7419	1	11770	11770		21.702	0	1				45187	4539	29843	29965	45773	45773					0.004621625349614078
VAGAFPLGL	9	Unmodified	_VAGAFPLGL_					0	0	0		ENSG00000215474|ENST00000425639|SKOR2	ENSG00000215474|ENST00000425639|SKOR2	ENSG00000215474|ENST00000425639|SKOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7479553222656	2	422.749996	843.485439	-2.593	-0.0010962	-2.1896	-0.00092566	-4.7827	-0.0020219	422.7488994555315	19.018	0.14569	19.018	18.915	19.061	0					5	3	2	0	0	0	0.21025	1	5090	5090		60.404	7.0522	1	55656			45188	7833	29844	29966	45774	45774					0.05743605219709025
VAGAVIGAVLA	11	Unmodified	_VAGAVIGAVLA_					0	0	0		nc|ENSG00000177707|Q9NQS3-3|NECTIN3	nc|ENSG00000177707|Q9NQS3-3|NECTIN3	nc|ENSG00000177707|Q9NQS3-3|NECTIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.79461669921875	2	470.794935	939.575317	-0.54406	-0.00025614	-0.61262	-0.00028842	-1.1567	-0.00054456	470.7949180169108	35.441	0.22141	35.441	35.33	35.552	0					6	4	2	0	0	0	0.55011	1	13694	13694		40.573	0	1	293620			45189	11660	29845	29967	45775	45775					0.10311234828282068
VAGAVVGA	8	Unmodified	_VAGAVVGA_					0	0	0		EXOG|p.A31D|1|0.1|ENSG00000157036|chr3:38496459-38496459|C/A|missense_variant;ENST00000489813.1_1_3:38537858-38539466:+|nuORF;nc|ENSG00000157036|Q9Y2C4-4|EXOG;ENSG00000157036|ENST00000287675|EXOG	EXOG|p.A31D|1|0.1|ENSG00000157036|chr3:38496459-38496459|C/A|missense_variant	EXOG|p.A31D|1|0.1|ENSG00000157036|chr3:38496459-38496459|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.19378662109375	2	322.192314	642.370075	3.5379	0.0011399	0.69288	0.00022324	4.2307	0.0013631	322.19254779068825	24.357	0.17549	24.357	24.286	24.462	0					9	5	2	0	0	0	0.78431	1	7172	7172		10.185	0	1	124400			45190	5195	29846	29968	45776	45776					0.034585010887212775
VAGAYVAGLI	10	Unmodified	_VAGAYVAGLI_					0	0	0		ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.2734069824219	2	467.273835	932.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.597	1	34.597	34.097	35.097	0								0	0	0	0.27548	1	12260	12260		54.765	4.7401	1				45191	7144	29847	29969	45777	45777					0.06415259419895847
VAGDIVLDK	9	Unmodified	_VAGDIVLDK_					0	0	0		ENST00000464178.1_1_1:38148756-38155336:-|nuORF;ENST00000491797.1_1_1:38155276-38156178:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2683410644531	2	465.26875	928.522947	2.6158	0.0012171	-4.2274	-0.0019669	-1.6116	-0.00074981	465.26714425797906	23.061	0.26158	23.061	22.956	23.218	0					11	5	3	0	0	0	0.034359	1	7776	7776		104.75	3.4939	1	1399200			45192	3014	29848	29970	45778	45778					0.05582651694658125
VAGDLKKL	8	Unmodified	_VAGDLKKL_					0	0	0			REV__tr|U7T5I8|U7T5I8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00072PE=4SV=1	REV__tr|U7T5I8|U7T5I8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00072PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.26837158203125	2	422.268553	842.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.613	1	26.613	26.113	27.113	0								0	0	0	1.7419	1	9546	9546		52.299	0	1		+		45193	22180	29849	29971	45779	45779					0.09499276765461673
VAGEVQGKVK	10	Unmodified	_VAGEVQGKVK_					0	0	0		tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.8001708984375	2	507.800749	1013.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.517	1	30.517	30.017	31.017	0								0	0	0	0.38475	1	9733	9733		35.152	2.3396	1				45194	22909	29850	29972	45780	45780					0.0806943185162936
VAGEVRALRK	10	Unmodified	_VAGEVRALRK_					0	0	0		ANGPTL6|p.G354Afs*115|1|0.27|ENSG00000130812|chr19:10093510-10093510|C/-|frameshift_variant;ENSG00000130812|ENST00000253109|ANGPTL6	ANGPTL6|p.G354Afs*115|1|0.27|ENSG00000130812|chr19:10093510-10093510|C/-|frameshift_variant	ANGPTL6|p.G354Afs*115|1|0.27|ENSG00000130812|chr19:10093510-10093510|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.8962097167969	3	366.896252	1097.66693	0.27179	9.9717E-05	-0.43585	-0.00015991	-0.16406	-6.0194E-05	366.8961482142372	17.265	0.11897	17.265	17.166	17.285	0					6	2	3	0	0	0	0.69166	1	5091	5091		28.081	1.0342	1	166070			45195	146	29851	29973	45781	45781					0.12199918245482877
VAGGGGRRAR	10	Unmodified	_VAGGGGRRAR_					0	0	0		ENST00000382849.2_1_4:2420749-2428195:+|nuORF	ENST00000382849.2_1_4:2420749-2428195:+|nuORF	ENST00000382849.2_1_4:2420749-2428195:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.7796630859375	2	478.778474	955.542394	2.2666	0.0010852	0.022574	1.0808E-05	2.2891	0.001096	478.7785143296884	33.621	0.30066	33.621	33.466	33.767	0					16	6	3	0	0	0	0.28723	1	12785	12785		68.787	68.787	1	4195100			45196	9126	29852	29974	45782	45782					0.06284465548787921
VAGGRGRARS	10	Unmodified	_VAGGRGRARS_					0	0	0		ENST00000447274.6_1_11:67056665-67056920:+|nuORF	ENST00000447274.6_1_11:67056665-67056920:+|nuORF	ENST00000447274.6_1_11:67056665-67056920:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7850036621094	2	493.783756	985.552959	2.7791	0.0013723	-0.31075	-0.00015344	2.4683	0.0012188	493.7836035408364	15.622	0.21073	15.622	15.471	15.681	0					7	4	2	0	0	0	0.26198	1	4171	4171		71.877	71.877	1	648090			45197	9627	29853	29975	45783	45783					0.059604482032341366
VAGGSVAVLCP	11	Unmodified	_VAGGSVAVLCP_					0	0	0		ENSG00000162896|ENST00000356495|PIGR;PIGR|p.W404Vfs*3|1|0.53|ENSG00000162896|chr1:206935654-206935655|-/C|frameshift_variant	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7648620605469	2	486.762778	971.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.992	1	17.992	17.492	18.492	0								0	0	0	0.45344	1	4405	4405		10.265	3.5297	1				45198	5509	29854	29976	45784	45784					0.02410711679817723
VAGKFPQGPS	10	Unmodified	_VAGKFPQGPS_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2662658691406	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.389	1	38.389	37.889	38.889	0								0	0	0	0.28607	1	15090	15090		53.089	3.6474	1				45199	7979	29855	29977	45785	45785					0.024731872717552505
VAGKSRWD	8	Unmodified	_VAGKSRWD_					0	0	0			REV__ENST00000529199.1_1_11:66333209-66333615:-|nuORF	REV__ENST00000529199.1_1_11:66333209-66333615:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.74298095703125	2	459.743234	917.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.542	1	13.542	13.042	14.042	0								0	0	0	1.7419	1	3167	3167		65.803	4.8312	1		+		45200	16543	29856	29978	45786	45786					0.009877474404675013
VAGLALSGLRT	11	Unmodified	_VAGLALSGLRT_					0	0	0			REV__nc|ENSG00000267493|Q8TBR5|CIRBP-AS1	REV__nc|ENSG00000267493|Q8TBR5|CIRBP-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	353.2168884277344	3	353.216991	1056.62914	1.4451	0.00051042	-1.4722	-0.00052001	-0.027166	-9.5954E-06	353.21637411129205	21.866	0.1646	21.866	21.759	21.924	0					10	3	4	0	0	0	0.56817	1	7303	7303		41.08	0	1	1390500	+		45201	21245	29857	29979	45787	45787					0.10309407260001535
VAGLGGPSPPA	11	Unmodified	_VAGLGGPSPPA_					0	0	0			REV__ENST00000479818.5_1_22:50713453-50713714:-|nuORF	REV__ENST00000479818.5_1_22:50713453-50713714:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.754638671875	2	461.753267	921.491981	-0.14871	-6.8667E-05	3.508	0.0016198	3.3593	0.0015512	461.7555878763939	23.62	0.21686	23.62	23.462	23.679	0					6	4	2	0	0	0	0.5473	1	8177	8177		40.778	1.972	1	153680	+		45202	19579	29858	29980	45788	45788					0.02809498380418063
VAGLLVGLA	9	Unmodified	_VAGLLVGLA_					0	0	0			REV__nc|ENSG00000182013|Q86V59-2|PNMA8A;REV__ENSG00000099250|ENST00000374867|NRP1	REV__nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.765625	2	406.765646	811.516739	0.40682	0.00016548	-0.28218	-0.00011478	0.12464	5.0699E-05	406.7653932818686	38.88	0.3011	38.88	38.777	39.078	0					22	10	3	0	0	0	0.43174	1	15254	15254		39.021	0	1	301340	+		45203	16861;13487	29859	29981	45789	45789					0.10344178253797054
VAGNPKPKI	9	Unmodified	_VAGNPKPKI_					0	0	0		nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;ENST00000511682.1_1_4:169819766-169825111:+|nuORF	nc|ENSG00000129116|Q8WX93-7|PALLD	nc|ENSG00000129116|Q8WX93-7|PALLD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.28717041015625	2	462.287277	922.560001	-0.44448	-0.00020548	0.11586	5.3561E-05	-0.32862	-0.00015192	462.2873518005035	31.754	0.31339	31.754	31.581	31.894	0					24	14	2	0	0	0	0.50461	1	10202	10202		31.955	0	1	129640			45204	3579	29860	29982	45790	45790					0.09562368031083679
VAGPRPISQT	10	Unmodified	_VAGPRPISQT_					0	0	0			REV__ENST00000486362.1_1_9:124584274-124585120:-|nuORF	REV__ENST00000486362.1_1_9:124584274-124585120:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2913818359375	2	513.290548	1024.56654	3.1619	0.001623	-0.79172	-0.00040638	2.3702	0.0012166	513.2905402583906	45.799	0.34593	45.799	45.664	46.01	0					24	15	2	0	0	0	0.60076	1	18344	18344		34.173	6.2903	1	69574	+		45205	19665	29861	29983	45791	45791					0.055242611917947215
VAGTPLRTL	9	Unmodified	_VAGTPLRTL_					0	0	0			REV__ENST00000596221.1_1_19:50920282-50921201:+|nuORF	REV__ENST00000596221.1_1_19:50920282-50921201:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2845153808594	2	464.284734	926.554916	0.57495	0.00026694	-1.5799	-0.00073353	-1.005	-0.00046659	464.2840047266896	35.793	0.2414	35.793	35.672	35.914	0					8	6	2	0	0	0	0.33044	1	13428	13428		47.657	7.0847	1	80014	+		45206	20563	29862	29984	45792	45792					0.0887006416847953
VAGVLAHVY	9	Unmodified	_VAGVLAHVY_					0	0	0		ENSG00000110900|ENST00000546076|TSPAN11	ENSG00000110900|ENST00000546076|TSPAN11	ENSG00000110900|ENST00000546076|TSPAN11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7664794921875	2	464.766178	927.517802	-0.7834	-0.0003641	0.71095	0.00033043	-0.072445	-3.367E-05	464.76638531644306	38.283	0.3682	38.283	38.186	38.554	0					39	19	3	0	0	0	0.52436	1	12970	12970		29.842	8.1392	1	521490			45207	2646	29863	29985	45793	45793					0.05114392622704145
VAGVLAHVY	9	Unmodified	_VAGVLAHVY_					0	0	0		ENSG00000110900|ENST00000546076|TSPAN11	ENSG00000110900|ENST00000546076|TSPAN11	ENSG00000110900|ENST00000546076|TSPAN11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.7655944824219	2	464.766178	927.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.311	1	38.311	37.811	38.811	0								0	0	0	0.36353	1	12925	12925		21.702	7.0382	1				45208	2646	29863	29985	45794	45794					0.05114392622704145
VAGVVRVWL	9	Unmodified	_VAGVVRVWL_					0	0	0		ENST00000487805.6_1_3:49742606-49743280:+|nuORF	ENST00000487805.6_1_3:49742606-49743280:+|nuORF	ENST00000487805.6_1_3:49742606-49743280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	333.54296875	3	333.543038	997.607286	0.52063	0.00017365	-0.5137	-0.00017134	0.0069281	2.3108E-06	333.5427897982724	31.181	0.54903	31.181	30.982	31.531	0					33	13	4	0	0	0	0.55379	1	11283	11283		26.693	26.693	1	747670			45209	10038	29864	29986	45795	45795					0.10838647302068694
VAGYPRRT	8	Unmodified	_VAGYPRRT_					0	0	0		ENST00000270747.7_1_1:16532824-16533518:-|nuORF	ENST00000270747.7_1_1:16532824-16533518:-|nuORF	ENST00000270747.7_1_1:16532824-16533518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2583312988281	2	460.259051	918.503549	-0.051545	-2.3724E-05	-1.7713	-0.00081526	-1.8228	-0.00083898	460.2581229044433	24.733	0.36914	24.733	24.506	24.876	0					13	8	2	0	0	0	0.49887	1	7771	7771		60.294	15.763	1	77653			45210	8378	29865	29987	45796	45796					0.041037401944208796
VAGYQGQVSF	10	Unmodified	_VAGYQGQVSF_					0	0	0			REV__nc|ENSG00000090097|P57723-2|PCBP4	REV__nc|ENSG00000090097|P57723-2|PCBP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.2639770507812	2	528.261456	1054.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.83	1	39.83	39.33	40.33	0								0	0	0	0.27541	1	14184	14184		54.776	12.38	1		+		45211	13422	29866	29988	45797	45797					-0.016714204534537203
VAHLGSQL	8	Unmodified	_VAHLGSQL_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.73455810546875	2	412.734877	823.455202	-0.70514	-0.00029104	0.18586	7.6712E-05	-0.51928	-0.00021432	412.73495158941387	27.619	0.26054	27.619	27.489	27.749	0					14	6	3	0	0	0	0.25102	1	9656	9656		99.375	11.621	1	695030			45212	1449	29867	29989	45798	45798					0.03641246554514055
VAHLGSQL	8	Unmodified	_VAHLGSQL_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	412.7347717285156	2	412.734877	823.455202	-1.4468	-0.00059716	1.1477	0.00047371	-0.29909	-0.00012345	412.73527300804324	27.359	0.1777	27.359	27.272	27.449	0					11	6	2	0	0	0	0.39125	1	8701	8701		71.877	25.926	1	140430			45213	1449	29867	29989	45799	45799					0.03641246554514055
VAHPATLI	8	Unmodified	_VAHPATLI_					0	0	0		tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	411.2477111816406	2	411.247621	820.480688	1.098	0.00045154	-1.2337	-0.00050736	-0.13575	-5.5826E-05	411.2471234130837	35.463	0.33214	35.463	35.352	35.684	0					14	9	2	0	0	0	0.67475	1	13772	13772		37.028	0	1	117560			45214	22759	29868	29990	45800	45800					0.06326721076936792
VAHTESEKTI	10	Unmodified	_VAHTESEKTI_					0	0	0			REV__DSPP|p.N1002Kfs*4|1|0.09|ENSG00000152591|chr4:87615665-87615666|-/A|frameshift_variant	REV__DSPP|p.N1002Kfs*4|1|0.09|ENSG00000152591|chr4:87615665-87615666|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7991943359375	2	557.790578	1113.5666	3.4793	0.0019407	0.88538	0.00049386	4.3647	0.0024346	557.7908858684699	28.078	1.4174	28.078	27.476	28.893	0					89	28	7	0	0	0	0.19797	1	10023	10023		79.713	7.8351	1	24231000	+		45215	12744	29869	29991	45801	45801					0.014362164011345158
VAHVSREA	8	Unmodified	_VAHVSREA_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7353820800781	2	434.735409	867.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.864	1	14.864	14.364	15.364	0								0	0	0	1.7419	1	3716	3716		29.15	4.9468	1				45216	2928	29870	29992	45802	45802					0.017234609234265008
VAHVSREA	8	Unmodified	_VAHVSREA_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.7349853515625	2	434.735409	867.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.832	1	14.832	14.332	15.332	0								0	0	0	1.7419	1	3933	3933		31.955	0	1				45217	2928	29870	29992	45803	45803					0.017234609234265008
VAIDAKVPI	9	Unmodified	_VAIDAKVPI_					0	0	0		ENSG00000167904|ENST00000434581|TMEM68	ENSG00000167904|ENST00000434581|TMEM68	ENSG00000167904|ENST00000434581|TMEM68	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.29034423828125	2	463.289485	924.564418	-0.14553	-6.7423E-05	-0.33509	-0.00015525	-0.48063	-0.00022267	463.2894649943216	29.318	0.25693	29.318	29.148	29.405	0					14	6	3	0	0	0	0.47038	1	9796	9796		35.618	4.0885	1	219130			45218	6037	29871	29993	45804	45804					0.09911832453997249
VAIGDVYFK	9	Unmodified	_VAIGDVYFK_					0	0	0		ZBTB25|p.E245Gfs*4|1|0.2|ENSG00000089775|chr14:64487497-64487498|-/C|frameshift_variant;ENSG00000089775|ENST00000608382|ZBTB25;ZBTB2|p.F476Lfs*3|1|0.24|ENSG00000181472|chr6:151365638-151365638|A/-|frameshift_variant;ENSG00000181472|ENST00000325144|ZBTB2	ZBTB25|p.E245Gfs*4|1|0.2|ENSG00000089775|chr14:64487497-64487498|-/C|frameshift_variant	ZBTB25|p.E245Gfs*4|1|0.2|ENSG00000089775|chr14:64487497-64487498|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2793273925781	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.399	1	41.399	40.899	41.899	0								0	0	0	0.27939	1	15734	15734		39.253	1.4413	1				45219	1822	29872	29994	45805	45805					0.03883242074334703
VAIGHGWLQ	9	Unmodified	_VAIGHGWLQ_					0	0	0			REV__A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant	REV__A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.7690124511719	2	490.769252	979.52395	-1.2574	-0.0006171	0.95058	0.00046651	-0.30684	-0.00015059	490.76962712023857	33.116	0.16499	33.116	33.051	33.216	0					11	7	2	0	0	0	0.43426	1	11103	11103		38.806	14.603	1	48859	+		45220	12016	29873	29995	45806	45806					0.03336910854238795
VAIGHGWLQ	9	Unmodified	_VAIGHGWLQ_					0	0	0			REV__A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant	REV__A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7690124511719	2	490.769252	979.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.095	1	33.095	32.595	33.595	0								0	0	0	0.22106	1	11579	11579		47.916	5.4411	1		+		45221	12016	29873	29995	45807	45807					0.03336910854238795
VAIGLAWTPLG	11	Unmodified	_VAIGLAWTPLG_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	366.5497131347656	3	366.54997	1096.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.278	1	37.278	36.778	37.778	0								0	0	0	0.44488	1	12609	12609		27.047	3.5246	1				45222	2200	29874	29996	45808	45808					0.08363192891079052
VAIGTAVTAAV	11	Unmodified	_VAIGTAVTAAV_					0	0	0		ENSG00000101425|ENST00000642449|BPI;nc|ENSG00000101425|P17213|BPI	ENSG00000101425|ENST00000642449|BPI	ENSG00000101425|ENST00000642449|BPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7895202636719	2	486.78985	971.565146	-0.54648	-0.00026602	0.081814	3.9826E-05	-0.46466	-0.00022619	486.7899339335697	19.648	0.11552	19.648	19.591	19.706	0					4	2	2	0	0	0	0.42875	1	6127	6127		49.442	7.0454	1	246530			45223	2120	29875	29997	45809	45809					0.078226271030303
VAIIARTDL	9	Unmodified	_VAIIARTDL_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2978210449219	2	486.297842	970.581131	0.011578	5.6302E-06	-0.24098	-0.00011719	-0.2294	-0.00011156	486.29766198431435	36.425	0.209	36.425	36.337	36.546	0					21	10	4	0	0	0	0.063171	1	11933	11933		90.601	26.394	1	333630			45224	6697;2436	29876	29998	45810	45810					0.09466333339958055
VAIIARTDL	9	Unmodified	_VAIIARTDL_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2975158691406	2	486.297842	970.581131	-0.29179	-0.0001419	0.1039	5.0525E-05	-0.1879	-9.1374E-05	486.29790682264417	36.71	0.26942	36.71	36.555	36.824	0					16	7	3	0	0	0	0.063171	1	13852	13852		90.601	26.394	1	1119700			45225	6697;2436	29876	29998	45811	45811					0.09466333339958055
VAIIARTDL	9	Unmodified	_VAIIARTDL_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2984924316406	2	486.297842	970.581131	-1.2407	-0.00060334	1.1378	0.00055331	-0.10287	-5.0025E-05	486.2982805539702	36.473	0.23497	36.473	36.38	36.615	0					23	13	3	0	0	0	0.22837	1	12341	12341		58.23	8.7884	1	151130			45226	6697;2436	29876	29998	45812	45812					0.09466333339958055
VAIIARTDL	9	Unmodified	_VAIIARTDL_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.298095703125	2	486.297842	970.581131	-0.86062	-0.00041852	0.81872	0.00039814	-0.0419	-2.0376E-05	486.29835016902746	36.455	0.14664	36.455	36.391	36.537	0					10	8	2	0	0	0	0.047412	1	12350	12350		96.19	24.895	1	76189			45227	6697;2436	29876	29998	45813	45813					0.09466333339958055
VAIIARTDL	9	Unmodified	_VAIIARTDL_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.29779052734375	2	486.297842	970.581131	0.64332	0.00031284	-1.0059	-0.00048918	-0.36261	-0.00017634	486.2974136621251	36.681	0.40677	36.681	36.532	36.939	0					25	12	3	0	0	0	0.01873	1	14294	14294		124.08	39.165	1	798310			45228	6697;2436	29876	29998	45814	45814					0.09466333339958055
VAIIARTDL	9	Unmodified	_VAIIARTDL_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-2|IMPDH1	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2975769042969	2	486.297842	970.581131	-0.68707	-0.00033412	0.35171	0.00017104	-0.33536	-0.00016309	486.2981068455789	36.672	0.18841	36.672	36.583	36.771	0					14	5	3	0	0	0	0.063171	1	14287	14287		90.601	41.159	1	451940			45229	6697;2436	29876	29998	45815	45815					0.09466333339958055
VAIITTTMY	9	Unmodified	_VAIITTTMY_					0	0	0			REV__SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant	REV__SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.77471923828125	2	506.772811	1011.53107	0.097549	4.9435E-05	3.1505	0.0015966	3.2481	0.001646	506.77453280704464	26.871	0.39284	26.871	26.595	26.988	0					15	9	2	0	0	0	0.26904	1	8724	8724		53.351	5.3919	1	114120	+		45230	13279	29877	29999	45816	45816					0.025764626197769758
VAIKAGTTL	9	Unmodified	_VAIKAGTTL_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2735595703125	2	437.273835	872.533118	0.2444	0.00010687	-0.76085	-0.0003327	-0.51644	-0.00022583	437.273521392724	28.825	0.19168	28.825	28.731	28.923	0					13	6	3	0	0	0	0.18416	1	9044	9044		63.534	6.8128	1	263300			45231	5907	29878	30000	45817	45817					0.0917525941989652
VAIKAGTTL	9	Unmodified	_VAIKAGTTL_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2734375	2	437.273835	872.533118	-0.40669	-0.00017784	0.11541	5.0464E-05	-0.29129	-0.00012737	437.27388629648283	29.079	0.25021	29.079	28.976	29.226	0					13	5	4	0	0	0	0.11898	1	10757	10757		75.043	8.614	1	1103700			45232	5907	29878	30000	45818	45818					0.0917525941989652
VAIKAGTTL	9	Unmodified	_VAIKAGTTL_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2737121582031	2	437.273835	872.533118	0.28715	0.00012556	-0.43324	-0.00018945	-0.14609	-6.3883E-05	437.2737155507066	28.899	0.19122	28.899	28.806	28.998	0					9	4	3	0	0	0	0.10915	1	9664	9664		77.318	8.5308	1	171960			45233	5907	29878	30000	45819	45819					0.0917525941989652
VAIKAGTTL	9	Unmodified	_VAIKAGTTL_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.273681640625	2	437.273835	872.533118	-0.6312	-0.00027601	-0.040225	-1.7589E-05	-0.67143	-0.0002936	437.27391085684866	28.884	0.30529	28.884	28.675	28.981	0					12	7	3	0	0	0	0.1424	1	9658	9658		69.628	20.186	1	172450			45234	5907	29878	30000	45820	45820					0.0917525941989652
VAIKAGTTL	9	Unmodified	_VAIKAGTTL_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2735900878906	2	437.273835	872.533118	-0.5605	-0.00024509	0.39952	0.0001747	-0.16098	-7.0394E-05	437.27397132331964	29.068	0.61623	29.068	28.758	29.375	0					19	12	3	0	0	0	0.048471	1	10614	10614		95.815	1.8087	1	1486200			45235	5907	29878	30000	45821	45821					0.0917525941989652
VAIKAGTTL	9	Unmodified	_VAIKAGTTL_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.273681640625	2	437.273835	872.533118	0.71879	0.00031431	-1.1371	-0.00049723	-0.41833	-0.00018292	437.27332283110496	29.051	0.36627	29.051	28.792	29.159	0					17	7	4	0	0	0	0.078509	1	10607	10607		85.161	18.732	1	1500700			45236	5907	29878	30000	45822	45822					0.0917525941989652
VAIKCVAK	8	Unmodified	_VAIKCVAK_					0	0	0		ENST00000562395.5_1_15:75134617-75135536:-|nuORF;nc|ENSG00000140474|Q6PHR2-2|ULK3;ENST00000570276.5_1_15:75132809-75135659:-|nuORF;nc|ENSG00000140474|Q6PHR2-3|ULK3;ENSG00000140474|ENST00000440863|ULK3;nc|ENSG00000140474|Q6PHR2-4|ULK3	ENST00000562395.5_1_15:75134617-75135536:-|nuORF	ENST00000562395.5_1_15:75134617-75135536:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.2596435546875	2	416.259674	830.504795	-1.4378	-0.00059849	1.1474	0.00047761	-0.29038	-0.00012087	416.26017615527996	20.631	0.14358	20.631	20.555	20.699	0					9	4	3	0	0	0	0.52345	1	5803	5803		57.811	7.7867	1	153660			45237	4387	29879	30001	45823	45823					0.08276238238966016
VAISALSIVA	10	Unmodified	_VAISALSIVA_					0	0	0			REV__ENSG00000175928|ENST00000319331|LRRN1	REV__ENSG00000175928|ENST00000319331|LRRN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2949523925781	2	472.294768	942.574983	-0.12308	-5.8129E-05	0.68736	0.00032464	0.56428	0.00026651	472.2949901868795	37.795	0.48818	37.795	37.567	38.055	0					24	16	3	0	0	0	0.56015	1	14754	14754		38.806	6.8513	1	138320	+		45238	16637	29880	30002	45824	45824					0.10139815108436778
VAISGLRQAG	10	Unmodified	_VAISGLRQAG_					0	0	0			REV__NT5C1B|p.A541V|1|0.36|ENSG00000185013|chr2:18564007-18564007|G/A|missense_variant	REV__NT5C1B|p.A541V|1|0.36|ENSG00000185013|chr2:18564007-18564007|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.28509521484375	2	486.285266	970.555979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.555	1	13.555	13.055	14.055	0								0	0	0	0.12773	1	2807	2807		74.255	10.949	1		+		45239	21310	29881	30003	45825	45825					0.06952278537380607
VAISVKDQRK	10	Unmodified	_VAISVKDQRK_					0	0	0		CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant;CLMN|p.K865Rfs*10|2|0.35|ENSG00000165959|chr14:95196612-95196612|T/-|frameshift_variant;ENSG00000165959|ENST00000298912|CLMN	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.899658203125	3	381.899662	1142.67716	0.6241	0.00023835	-0.86759	-0.00033133	-0.24349	-9.2988E-05	381.8993911871505	16.541	0.16552	16.541	16.434	16.6	0					7	3	3	0	0	0	0.65895	1	4612	4612		27.047	0.98393	1	972670			45240	557	29882	30004	45826	45826					0.11152481180033647
VAKAVGKAIPE	11	Unmodified	_VAKAVGKAIPE_					0	0	0		ENST00000520713.5_1_8:101563216-101563492:-|nuORF	ENST00000520713.5_1_8:101563216-101563492:-|nuORF	ENST00000520713.5_1_8:101563216-101563492:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.8318481445312	2	541.832049	1081.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.54	1	37.54	37.04	38.04	0								0	0	0	0.43892	1	12292	12292		25.126	3.4402	1				45241	10303	29883	30005	45827	45827					0.1119857791979939
VAKAVTQAL	9	Unmodified	_VAKAVTQAL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7789001464844	2	450.779285	899.544017	0.64205	0.00028942	-1.7282	-0.00077902	-1.0861	-0.00048959	450.77850199596224	26.278	0.13515	26.278	26.204	26.34	0					6	3	2	0	0	0	0.3269	1	9064	9064		47.96	0.043923	1	136510			45242	4144	29884	30006	45828	45828					0.09022661794165288
VAKEKPQAK	9	Unmodified	_VAKEKPQAK_					0	0	0			REV__ENST00000579224.5_1_17:18001659-18002970:+|nuORF	REV__ENST00000579224.5_1_17:18001659-18002970:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.2219543457031	3	333.537953	997.59203	0.38782	0.00012935	-0.47174	-0.00015734	-0.083917	-2.799E-05	333.5378261379131	17.326	0.16085	17.326	17.217	17.377	0					6	3	2	0	0	0	0.61124	1	5093	5093		19.104	5.6495	1	115110	+		45243	20442	29885	30007	45829	45829					0.09313735714226823
VAKESIPL	8	Unmodified	_VAKESIPL_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2;ENST00000328453.9_1_7:99831276-99869601:-|nuORF;ENST00000544802.5_1_7:72569162-72589455:+|nuORF	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.760498046875	2	428.760561	855.506569	0.94422	0.00040484	-1.2119	-0.00051963	-0.26772	-0.00011479	428.76006091714993	31.182	0.32074	31.182	31.027	31.348	0					12	7	2	0	0	0	0.24498	1	11745	11745		110.34	7.5639	1	382420			45244	8097	29886	30008	45830	45830					0.07303570528563341
VAKESIPL	8	Unmodified	_VAKESIPL_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2;ENST00000328453.9_1_7:99831276-99869601:-|nuORF;ENST00000544802.5_1_7:72569162-72589455:+|nuORF	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.76031494140625	2	428.760561	855.506569	1.0438	0.00044754	-1.3313	-0.0005708	-0.28748	-0.00012326	428.7598822724682	31.166	0.26413	31.166	31.011	31.275	0					11	5	3	0	0	0	0.37378	1	11637	11637		73.975	5.49	1	342950			45245	8097	29886	30008	45831	45831					0.07303570528563341
VAKKKMMRTHL	11	Unmodified	_VAKKKMMRTHL_					0	0	0		CHD4|p.L1194R|1|0.22|ENSG00000111642|chr12:6587834-6587834|A/C|missense_variant	CHD4|p.L1194R|1|0.22|ENSG00000111642|chr12:6587834-6587834|A/C|missense_variant	CHD4|p.L1194R|1|0.22|ENSG00000111642|chr12:6587834-6587834|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2646179199219	3	448.265182	1341.77372	-1.176	-0.00052718	-0.37741	-0.00016918	-1.5534	-0.00069636	448.2651115916888	19.656	0.10122	19.656	19.586	19.688	0					5	3	2	0	0	0	0.80169	1	5369	5369		14.694	1.7362	1	100930			45246	505	29887	30009	45832	45832					0.1165000914400025
VAKKMNLDMRK	11	Unmodified	_VAKKMNLDMRK_					0	0	0		NOS1|p.M688Cfs*52|1|0.39|ENSG00000089250|chr12:117265391-117265391|G/-|frameshift_variant;NOS1|p.G676Afs*64|2|0.23|ENSG00000089250|chr12:117265425-117265425|C/-|frameshift_variant;NOS1|p.L911Qfs*6|1|0.04|ENSG00000089250|chr12:117247436-117247439|CCCA/-|frameshift_variant;nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1	NOS1|p.M688Cfs*52|1|0.39|ENSG00000089250|chr12:117265391-117265391|G/-|frameshift_variant	NOS1|p.M688Cfs*52|1|0.39|ENSG00000089250|chr12:117265391-117265391|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.25341796875	3	445.252942	1332.737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.253	1	27.253	26.753	27.753	0								0	0	0	0.41351	1	8891	8891		34.087	0	1				45247	1812	29888	30010	45833	45833					0.08393712527367825
VAKLLNISQPL	11	Unmodified	_VAKLLNISQPL_					0	0	0		ENSG00000213973|ENST00000596209|ZNF99	ENSG00000213973|ENST00000596209|ZNF99	ENSG00000213973|ENST00000596209|ZNF99	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.2509765625	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.851	1	53.851	53.351	54.351	0								0	0	0	0.45674	1	18891	18891		19.263	1.4295	1				45248	7802	29889	30011	45834	45834					0.14403109016711824
VAKLNDSSLL	10	Unmodified	_VAKLNDSSLL_					0	0	0			REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3060913085938	2	530.305864	1058.59717	0.38741	0.00020544	0.79942	0.00042394	1.1868	0.00062938	530.3062174925798	25.625	0.20471	25.625	25.52	25.724	0					13	6	3	0	0	0	0.61187	1	8011	8011		32.812	0	1	203910	+		45249	21740	29890	30012	45835	45835					0.07021994786191499
VAKLSKTAK	9	Unmodified	_VAKLSKTAK_					0	0	0			REV__tr|U7SUF4|U7SUF4_FUSNUPhosphoglyceratekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgkPE=3SV=1	REV__tr|U7SUF4|U7SUF4_FUSNUPhosphoglyceratekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgkPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.30712890625	2	473.30821	944.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.615	1	12.615	12.115	13.115	0								0	0	0	0.40021	1	2727	2727		10.866	0.6003	1		+		45250	21973	29891	30013	45836	45836					0.1273492371959719
VAKQGEREK	9	Unmodified	_VAKQGEREK_					0	0	0			REV__nc|ENSG00000116580|Q3T8J9-3|GON4L	REV__nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7957153320312	2	522.793455	1043.57236	3.4084	0.0017819	0.57257	0.00029933	3.9809	0.0020812	522.7936627584875	27.837	0.86656	27.837	27.628	28.495	0					30	17	4	0	0	0	0.17854	1	9997	9997		64.207	2.0999	1	1827300	+		45251	14148	29892	30014	45837	45837					0.05231359703475391
VAKQHAAEEP	10	Unmodified	_VAKQHAAEEP_					0	0	0			REV__nc|ENSG00000135100|P20823-8|HNF1A	REV__nc|ENSG00000135100|P20823-8|HNF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.5208740234375	3	360.520851	1078.54072	0.72879	0.00026274	-0.71202	-0.0002567	0.016772	6.0468E-06	360.52056109743535	16.409	0.272	16.409	16.318	16.59	0					20	6	4	0	0	0	0.57532	1	4433	4433		41.427	0	1	1279700	+		45252	14783	29893	30015	45838	45838					0.004593669495079666
VAKQPKDVI	9	Unmodified	_VAKQPKDVI_					0	0	0			REV__nc|ENSG00000164398|Q9UKU0-5|ACSL6	REV__nc|ENSG00000164398|Q9UKU0-5|ACSL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.305419921875	2	499.305667	996.596781	-0.72785	-0.00036342	0.49217	0.00024574	-0.23569	-0.00011768	499.3059380125189	30.672	0.56442	30.672	30.529	31.093	0					28	11	3	0	0	0	0.38666	1	11399	11399		35.618	7.736	1	2013100	+		45253	21097	29894	30016	45839	45839					0.09834619856997051
VAKQSTARAI	10	Unmodified	_VAKQSTARAI_					0	0	0		ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.8768005371094	3	348.876857	1043.60874	0.69509	0.0002425	-0.84923	-0.00029628	-0.15414	-5.3777E-05	348.8764534078246	13.733	0.089832	13.733	13.665	13.755	0					4	2	2	0	0	0	0.67098	1	3195	3195		45.022	13.492	1	61683			45254	6208	29895	30017	45840	45840					0.08868236600164892
VAKYLMVK	8	Oxidation (M)	_VAKYLM(Oxidation (M))VK_		VAKYLM(1)VK		VAKYLM(60)VK	0	0	1		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2873840332031	2	484.285889	966.557224	2.4529	0.0011879	0.54311	0.00026302	2.996	0.0014509	484.2861737122328	14.129	0.26807	14.129	14.073	14.341	0					9	5	3	0	0	0	0.49887	1	3454	3454		60.294	60.294	1	2770400			45255	1529	29896	30018	45841	45841		72			0.07260776581915707
VALAAGAA	8	Unmodified	_VALAAGAA_					0	0	0		ENST00000529738.1_1_11:67046963-67053650:+|nuORF	ENST00000529738.1_1_11:67046963-67053650:+|nuORF	ENST00000529738.1_1_11:67046963-67053650:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.19329833984375	2	322.192314	642.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.153	1	32.153	31.653	32.653	0								0	0	0	1.7419	1	11152	11152		16.705	0	1				45256	10415	29897	30019	45842	45842					0.03458501088709909
VALDAGTAK	9	Unmodified	_VALDAGTAK_					0	0	0		ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1	ENSG00000198522|ENST00000610189|GPN1	ENSG00000198522|ENST00000610189|GPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.23992919921875	2	423.239993	844.465432	0.36144	0.00015298	-0.54277	-0.00022972	-0.18133	-7.6746E-05	423.2396528523627	23.811	0.15276	23.811	23.751	23.904	0					6	3	2	0	0	0	0.078509	1	7944	7944		85.161	2.4103	1	171400			45257	7573	29898	30020	45843	45843					0.03697809489096926
VALEPGRAG	9	Unmodified	_VALEPGRAG_					0	0	0		ENST00000283629.7_1_3:33481753-33481864:-|nuORF	ENST00000283629.7_1_3:33481753-33481864:-|nuORF	ENST00000283629.7_1_3:33481753-33481864:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2450866699219	2	435.245609	868.476666	-0.84594	-0.00036819	0.25392	0.00011052	-0.59203	-0.00025768	435.2457516392725	22.727	0.25409	22.727	22.63	22.884	0					17	9	2	0	0	0	0.45358	1	6726	6726		37.159	1.5408	1	157010			45258	8419	29899	30021	45844	45844					0.03716631583245089
VALFTCISTK	10	Unmodified	_VALFTCISTK_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.8015747070312	2	541.79936	1081.58417	3.5488	0.0019227	0.57182	0.00030981	4.1206	0.0022326	541.7995832118422	13.696	0.21104	13.696	13.589	13.8	0					9	4	3	0	0	0	0.56931	1	3250	3250		37.812	3.639	1	612590	+		45259	13075	29900	30022	45845	45845					0.04663840402417918
VALGLGAQPQP	11	Unmodified	_VALGLGAQPQP_					0	0	0		ENST00000292408.8_1_5:176524707-176524845:+|nuORF	ENST00000292408.8_1_5:176524707-176524845:+|nuORF	ENST00000292408.8_1_5:176524707-176524845:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7998046875	2	525.800749	1049.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.051	1	39.051	38.551	39.551	0								0	0	0	0.45614	1	13941	13941		24.519	1.4767	1				45260	8441	29901	30023	45846	45846					0.06413431851615314
VALGQRHLA	9	Unmodified	_VALGQRHLA_					0	0	0			REV__ENST00000578423.1_1_17:37213316-37264034:+|nuORF	REV__ENST00000578423.1_1_17:37213316-37264034:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	322.193603515625	3	322.194409	963.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.971	1	25.971	25.471	26.471	0								0	0	0	0.3368	1	8294	8294		27.882	4.3595	1		+		45261	20433	29902	30024	45847	45847					0.07816002119841414
VALGSTLLCT	10	Unmodified	_VALGSTLLCT_					0	0	0			REV__PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant	REV__PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2708435058594	2	489.270435	976.526318	-0.71468	-0.00034967	3.8701	0.0018935	3.1554	0.0015438	489.2726761322154	35.303	0.32992	35.303	35.052	35.382	0					15	9	2	0	0	0	0.66185	1	13663	13663		26.693	0	1	126110	+		45262	15543	29903	30025	45848	45848					0.037115784770321625
VALHVNIVN	9	Unmodified	_VALHVNIVN_					0	0	0		nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242|MYB;chr6:135201749-135202414|375|10.11|0.42|4.6|+|ENST00000616088|MYB,MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-8|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242-7|MYB	nc|ENSG00000118513|P10242-12|MYB	nc|ENSG00000118513|P10242-12|MYB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7904052734375	2	489.790184	977.565815	-1.2538	-0.00061408	2.15	0.001053	0.89621	0.00043895	489.7909672196561	33.456	0.12975	33.456	33.385	33.515	0					8	5	2	0	0	0	0.35021	1	11247	11247		38.806	0	1	53895			45263	532	29904	30026	45849	45849					0.07613466542750302
VALIVTHESPN	11	Unmodified	_VALIVTHESPN_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	590.3231201171875	2	590.322045	1178.62954	0.21108	0.0001246	-0.22725	-0.00013415	-0.016177	-9.5496E-06	590.3219904691202	40.188	0.33695	40.188	40.068	40.405	0					30	14	3	0	0	0	0.67178	1	15304	15304		30.318	3.2704	1	219470	+		45264	14028	29905	30027	45850	45850					0.047367821892066786
VALKHNKD	8	Unmodified	_VALKHNKD_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7682800292969	2	462.766709	923.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.955	1	28.955	28.455	29.455	0								0	0	0	1.7419	1	9680	9680		44.117	1.7207	1				45265	9907	29906	30028	45851	45851					0.054046069916125816
VALLLFWI	8	Unmodified	_VALLLFWI_					0	0	0			REV__ENST00000464468.1_1_7:931948-933548:+|nuORF	REV__ENST00000464468.1_1_7:931948-933548:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.8055725097656	2	487.807314	973.600075	-2.9107	-0.0014199	-0.70449	-0.00034365	-3.6152	-0.0017635	487.806902723891	42.948	0.27228	42.948	42.835	43.108	0					35	16	3	0	0	0	0.63381	1	14931	14931		43.626	0	1	225670	+		45266	17675	29907	30029	45852	45852					0.11221914701650348
VALLLYSQE	9	Unmodified	_VALLLYSQE_					0	0	0			REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	REV__MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2879028320312	2	518.289682	1034.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.803	1	13.803	13.303	14.303	0								0	0	0	0.35899	1	3291	3291		23.042	1.0826	1		+		45267	20906	29908	30030	45853	45853					0.04891207383184337
VALLNKTNV	9	Unmodified	_VALLNKTNV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;CTNNB1|p.K292T|1|0.34|ENSG00000168036|chr3:41225800-41225800|A/C|missense_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.29779052734375	2	486.297842	970.581131	-1.24	-0.00060301	0.94842	0.00046121	-0.29158	-0.0001418	486.29828070324186	27.595	0.15937	27.595	27.523	27.682	0					9	5	2	0	0	0	0.44593	1	8811	8811		37.812	0	1	102580			45268	6049	29909	30031	45854	45854					0.09466333339958055
VALMGAVKLK	10	Unmodified	_VALMGAVKLK_					0	0	0			REV__ENSG00000125780|ENST00000381458|TGM3	REV__ENSG00000125780|ENST00000381458|TGM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.8889465332031	3	343.887817	1028.64162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.754	1	17.754	17.254	18.254	0								0	0	0	0.39665	1	4493	4493		31.53	5.9558	1		+		45269	14441	29910	30032	45855	45855					0.1284472739866942
VALMGAVKLK	10	Unmodified	_VALMGAVKLK_					0	0	0			REV__ENSG00000125780|ENST00000381458|TGM3	REV__ENSG00000125780|ENST00000381458|TGM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8890380859375	3	343.887817	1028.64162	3.0266	0.0010408	0.44699	0.00015371	3.4736	0.0011945	343.88801420585423	17.906	0.20944	17.906	17.8	18.01	0					12	4	4	0	0	0	0.44601	1	5267	5267		51.193	51.193	1	1767100	+		45270	14441	29910	30032	45856	45856					0.1284472739866942
VALNQPPGPT	10	Unmodified	_VALNQPPGPT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	331.8501892089844	3	331.850308	992.529095	-0.66753	-0.00022152	0.28396	9.4233E-05	-0.38357	-0.00012729	331.8503528758599	16.722	0.10409	16.722	16.673	16.777	0					7	4	2	0	0	0	0.70877	1	4069	4069		40.058	13.011	1	67997	+		45271	15602;22247	29911	30033	45857	45857					0.03253169926199462
VALPGEVIK	9	Unmodified	_VALPGEVIK_					0	0	0		ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.28912353515625	2	463.289485	924.564418	0.76305	0.00035351	-1.9192	-0.00088914	-1.1561	-0.00053562	463.288807300273	29.456	0.45887	29.456	29.19	29.648	0					19	9	3	0	0	0	0.22377	1	10803	10803		58.782	7.4465	1	587480			45272	10324	29912	30034	45858	45858					0.0991183245398588
VALPSPPSPS	10	Unmodified	_VALPSPPSPS_					0	0	0		ENSG00000108018|ENST00000263054|SORCS1	ENSG00000108018|ENST00000263054|SORCS1	ENSG00000108018|ENST00000263054|SORCS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2621765136719	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.676	1	26.676	26.176	27.176	0								0	0	0	0.35368	1	9454	9454		42.396	3.59	1				45273	2510	29913	30035	45859	45859					0.03006365177623138
VALQACKSRS	10	Unmodified	_VALQACKSRS_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	354.8624267578125	3	354.862331	1061.56516	-0.054474	-1.9331E-05	0.59629	0.0002116	0.54181	0.00019227	354.8625420326212	32.278	0.21857	32.278	32.219	32.438	0					5	4	2	0	0	0	0.65895	1	12169	12169		27.047	4.4677	1	115710			45274	11586	29914	30036	45860	45860					0.03684303831391844
VALREEQP	8	Unmodified	_VALREEQP_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.25823974609375	2	471.256174	940.497795	2.4893	0.0011731	1.6889	0.00079589	4.1782	0.001969	471.25693822220336	34.709	0.4041	34.709	34.46	34.864	0					19	8	3	0	0	0	0.60719	1	13342	13342		47.916	0	1	2065800	+		45275	21237	29915	30037	45861	45861					0.025165968920987325
VALRNRCP	8	Unmodified	_VALRNRCP_					0	0	0		nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	nc|ENSG00000167280|Q8NFI3-3|ENGASE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.7638854980469	2	464.760904	927.507254	2.6098	0.0012129	2.5772	0.0011978	5.187	0.0024107	464.76251717336237	16.576	0.50612	16.576	16.466	16.973	0					34	10	6	0	0	0	0.6282	1	4602	4602		44.531	3.9584	1	5940500			45276	11630	29916	30038	45862	45862					0.04060086696631515
VALVGTSARK	10	Unmodified	_VALVGTSARK_					0	0	0			REV__ENST00000438934.5_2_22:18958062-18975611:+|nuORF	REV__ENST00000438934.5_2_22:18958062-18975611:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.5415954589844	3	334.541586	1000.60293	-0.6675	-0.00022331	0.77803	0.00026028	0.11053	3.6978E-05	334.541751048328	15.454	0.096848	15.454	15.397	15.494	0					5	3	2	0	0	0	0.68774	1	3534	3534		23.523	3.4922	1	117410	+		45277	19224	29917	30039	45863	45863					0.10265138088516323
VALYVYKQK	9	Unmodified	_VALYVYKQK_					0	0	0			REV__LRRC42|p.C416Y|1|0.32|ENSG00000116212|chr1:53967899-53967899|G/A|missense_variant	REV__LRRC42|p.C416Y|1|0.32|ENSG00000116212|chr1:53967899-53967899|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.328857421875	2	556.329142	1110.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.398	1	17.398	16.898	17.898	0								0	0	0	0.37496	1	4352	4352		18.324	0.062328	1		+		45278	20847	29918	30040	45864	45864					0.09283479408145467
VAMAAARAL	9	Unmodified	_VAMAAARAL_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2527160644531	2	437.25238	872.490207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.416	1	29.416	28.916	29.916	0								0	0	0	0.23459	1	9281	9281		45.952	13.997	1				45279	7406	29919	30041	45865	45865					0.048861660908073645
VAMAAARAL	9	Unmodified	_VAMAAARAL_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.252197265625	2	437.25238	872.490207	0.62512	0.00027334	-1.3323	-0.00058255	-0.70717	-0.00030921	437.2523404627019	29.685	0.21863	29.685	29.527	29.745	0					10	5	3	0	0	0	0.021468	1	10630	10630		119.56	30.914	1	212020			45280	7406	29919	30041	45866	45866					0.048861660908073645
VAMGYSHSL	9	Unmodified	_VAMGYSHSL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.7312927246094	2	482.731477	963.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.161	1	30.161	29.661	30.661	0								0	0	0	0.1836	1	10237	10237		53.351	8.8204	1				45281	6751	29920	30042	45867	45867					-0.0347843438835298
VAMMLHQA	8	Oxidation (M)	_VAM(Oxidation (M))MLHQA_		VAM(0.983)M(0.017)LHQA		VAM(18)M(-18)LHQA	0	0	1			REV__ENSG00000153292|ENST00000371253|ADGRF1	REV__ENSG00000153292|ENST00000371253|ADGRF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7223205566406	2	458.722598	915.430643	-2.6412	-0.0012116	1.8035	0.00082729	-0.83777	-0.00038431	458.7234018524635	20.517	0.22541	20.517	20.296	20.521	0					8	5	2	0	0	0	0.59916	1	5774	5774		49.211	15.038	2	73571	+		45282	15537	29921	30043	45868	45868		598			-0.030454729148686965
VAMNIIMSK	9	Unmodified	_VAMNIIMSK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7745056152344	2	503.774831	1005.53511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.316	1	36.316	35.816	36.816	0								0	0	0	0.069826	1	13687	13687		80.455	27.103	1				45283	1698	29922	30044	45869	45869					0.032562288418489516
VAMNIIMSK	9	Unmodified	_VAMNIIMSK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.77490234375	2	503.774831	1005.53511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.268	1	36.268	35.768	36.768	0								0	0	0	0.10319	1	14078	14078		70.816	21.605	1				45284	1698	29922	30044	45870	45870					0.032562288418489516
VANDFIQVYK	10	Unmodified	_VANDFIQVYK_					0	0	0			REV__tr|U7T5I8|U7T5I8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00072PE=4SV=1	REV__tr|U7T5I8|U7T5I8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00072PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.5492248535156	3	399.548518	1195.62372	0.9303	0.0003717	0.033393	1.3342E-05	0.96369	0.00038504	399.5488187251019	21.923	0.7081	21.923	21.823	22.531	0					27	16	2	0	0	0	0.54861	1	7090	7090		40.058	2.2467	1	496130	+		45285	22180	29923	30045	45871	45871					0.033736836775233314
VANGFKVKHK	10	Unmodified	_VANGFKVKHK_					0	0	0			REV__OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant	REV__OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.3367919921875	2	564.337833	1126.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.785	1	33.785	33.285	34.285	0								0	0	0	0.4201	1	11359	11359		6.3127	5.3158	1		+		45286	17147	29924	30046	45872	45872					0.10284819733806216
VANGRIQSL	9	Unmodified	_VANGRIQSL_					0	0	0		nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1;ENST00000405444.3_1_4:38134403-38138953:+|nuORF;ENST00000401554.5_1_4:38112345-38138953:+|nuORF;ENST00000407365.5_1_4:38113700-38138953:+|nuORF	nc|ENSG00000065882|Q86TI0-2|TBC1D1	nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2769775390625	2	479.277441	956.540328	0.90051	0.00043159	-1.6465	-0.00078915	-0.74603	-0.00035756	479.27655026388334	26.193	0.16472	26.193	26.134	26.298	0					5	3	2	0	0	0	0.063171	1	9234	9234		90.601	13.283	1	542810			45287	1380	29925	30047	45873	45873					0.06031992020336929
VANKEYVAY	9	Unmodified	_VANKEYVAY_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.771484375	2	528.771657	1055.52876	0.50917	0.00026923	-0.18173	-9.6094E-05	0.32744	0.00017314	528.7714464370777	27.496	0.10935	27.496	27.423	27.533	0					5	3	2	0	0	0	0.45358	1	8487	8487		37.159	5.2042	1	79203			45288	2821	29926	30048	45874	45874					0.00321750206330762
VANLVPQLP	9	Unmodified	_VANLVPQLP_					0	0	0			REV__ENST00000502973.1_1_4:164079476-164087879:-|nuORF	REV__ENST00000502973.1_1_4:164079476-164087879:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2356262207031	2	475.78711	949.559667	0.62422	0.00029699	-0.45785	-0.00021784	0.16637	7.9157E-05	475.78700385295923	42.764	0.26416	42.764	42.718	42.982	0					17	13	2	0	0	0	0.50461	1	16834	16834		31.955	0	1	337780	+		45289	15273	29927	30049	45875	45875					0.08286948311229025
VANPNSAIF	9	Unmodified	_VANPNSAIF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.74554443359375	2	466.745442	931.476331	0.055638	2.5969E-05	-0.50461	-0.00023552	-0.44897	-0.00020956	466.7451821387478	40.214	0.22255	40.214	40.158	40.38	0					21	13	2	0	0	0	0.16002	1	13009	13009		66.429	14.13	1	231550			45290	2453	29928	30050	45876	45876					0.007852118633763894
VANPNSAIF	9	Unmodified	_VANPNSAIF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.7451171875	2	466.745442	931.476331	-0.95117	-0.00044395	-0.30509	-0.0001424	-1.2563	-0.00058635	466.7456160132691	40.366	0.15373	40.366	40.279	40.433	0					11	9	2	0	0	0	0.38666	1	13513	13513		42.864	9.3487	1	105060			45291	2453	29928	30050	45877	45877					0.007852118633763894
VANPNSAIF	9	Unmodified	_VANPNSAIF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7456970214844	2	466.745442	931.476331	-0.13339	-6.2261E-05	-0.032147	-1.5005E-05	-0.16554	-7.7265E-05	466.7453762977733	40.535	0.23209	40.535	40.473	40.705	0					14	9	3	0	0	0	0.30951	1	15969	15969		49.442	6.9671	1	104400			45292	2453	29928	30050	45878	45878					0.007852118633763894
VANPNSAIF	9	Unmodified	_VANPNSAIF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7448425292969	2	466.745442	931.476331	-0.18501	-8.6351E-05	0.24215	0.00011302	0.057138	2.6669E-05	466.745525048412	40.343	0.24853	40.343	40.218	40.466	0					14	13	2	0	0	0	0.24095	1	14334	14334		56.721	8.8055	1	58654			45293	2453	29928	30050	45879	45879					0.007852118633763894
VANPNSAIF	9	Unmodified	_VANPNSAIF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7451171875	2	466.745442	931.476331	-0.50222	-0.00023441	0.055368	2.5843E-05	-0.44685	-0.00020857	466.7455105660374	40.512	0.46565	40.512	40.359	40.825	0					20	9	3	0	0	0	0.10915	1	16078	16078		77.318	29.402	1	486940			45294	2453	29928	30050	45880	45880					0.007852118633763894
VANPNSAIF	9	Unmodified	_VANPNSAIF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7452087402344	2	466.745442	931.476331	0.63597	0.00029684	-0.99262	-0.0004633	-0.35666	-0.00016647	466.74500995911416	40.508	0.46724	40.508	40.295	40.762	0					26	10	4	0	0	0	0.07136	1	16092	16092		87.696	27.402	1	1049700			45295	2453	29928	30050	45881	45881					0.007852118633763894
VAPAYKND	8	Unmodified	_VAPAYKND_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2239685058594	2	439.224342	876.434132	-0.28265	-0.00012415	-0.11146	-4.8955E-05	-0.39411	-0.0001731	439.22427345563176	20.517	0.21029	20.517	20.425	20.636	0					15	6	3	0	0	0	0.60719	1	5482	5482		47.916	1.1492	1	724040	+		45296	14256	29929	30051	45882	45882					-0.009027635450138405
VAPEEHPV	8	Unmodified	_VAPEEHPV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;POTEF|p.L804P|1|0.35|ENSG00000196604|chr2:130075061-130075061|A/G|missense_variant;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2240295410156	2	439.224342	876.434132	0.62811	0.00027588	-0.84824	-0.00037257	-0.22013	-9.6685E-05	439.22393638562977	20.772	0.31747	20.772	20.612	20.93	0					18	6	4	0	0	0	0.28158	1	6768	6768		88.643	14.668	1	8255600			45297	1545;6995	29930	30052	45883	45883					-0.009027635450024718
VAPEEHPV	8	Unmodified	_VAPEEHPV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;POTEF|p.L804P|1|0.35|ENSG00000196604|chr2:130075061-130075061|A/G|missense_variant;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.2241516113281	2	439.224342	876.434132	-0.59006	-0.00025917	0.18987	8.3395E-05	-0.40019	-0.00017577	439.2243965872864	20.604	0.27421	20.604	20.477	20.751	0					14	6	3	0	0	0	0.4723	1	5814	5814		62.978	25.819	1	895560			45298	1545;6995	29930	30052	45884	45884					-0.009027635450024718
VAPEEHPV	8	Unmodified	_VAPEEHPV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;POTEF|p.L804P|1|0.35|ENSG00000196604|chr2:130075061-130075061|A/G|missense_variant;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.2240905761719	2	439.224342	876.434132	0.68452	0.00030066	-0.51217	-0.00022496	0.17235	7.57E-05	439.2240912852526	20.735	0.41429	20.735	20.477	20.891	0					16	8	4	0	0	0	0.29779	1	6620	6620		83.287	0.98216	1	6341100			45299	1545;6995	29930	30052	45885	45885					-0.009027635450024718
VAPEEHPVL	9	Unmodified	_VAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.76611328125	2	495.766374	989.518196	0.71926	0.00035659	-1.3683	-0.00067838	-0.64907	-0.00032179	495.7656416107534	29.375	0.28338	29.375	29.239	29.522	0					12	6	2	0	0	0	0.26904	1	10878	10878		53.351	5.6941	1	1972000			45300	1545;6995	29931	30053	45886	45886					0.023017675519099612
VAPFGNTF	8	Unmodified	_VAPFGNTF_					0	0	0		nc|ENSG00000196313|Q96HA1-3|POM121	nc|ENSG00000196313|Q96HA1-3|POM121	nc|ENSG00000196313|Q96HA1-3|POM121	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	426.7140197753906	2	426.716153	851.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.464	1	28.464	27.964	28.964	0								0	0	0	1.7419	1	10061	10061		44.531	0	1				45301	11707	29932	30054	45887	45887					-0.013898447111046153
VAPGGVSG	8	Unmodified	_VAPGGVSG_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;ENST00000599722.1_1_19:50334108-50335279:+|nuORF;nc|ENSG00000104973|Q71SY5-6|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.1752624511719	2	322.174121	642.33369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.9	1	31.9	31.4	32.4	0								0	0	0	1.7419	1	12075	12075		4.6817	0	1				45302	11468	29933	30055	45888	45888					-0.0017837580799096031
VAPGSVQCL	9	Carbamidomethyl (C)	_VAPGSVQC(Carbamidomethyl (C))L_	VAPGSVQC(1)L		VAPGSVQC(53)L		0	1	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.7388916015625	2	465.739302	929.464052	-2.2887	-0.0010659	1.3857	0.00064537	-0.903	-0.00042056	465.7396944869993	34.171	0.19955	34.171	34.12	34.32	0					11	6	2	0	0	0	0.27249	1	12072	12072		52.937	16.49	1	76557			45303	7601	29934	30056	45889	45889	326				-0.0035014787132467973
VAPKVGNFIA	10	Unmodified	_VAPKVGNFIA_					0	0	0			REV__tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1	REV__tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.2012939453125	3	339.202682	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.246	1	18.246	17.746	18.746	0								0	0	0	0.40063	1	5567	5567		30.318	8.3578	1		+		45304	21998	29935	30057	45890	45890					0.07950637202566213
VAPMLPEL	8	Unmodified	_VAPMLPEL_					0	0	0			REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2453308105469	2	435.243689	868.472826	2.6363	0.0011474	1.0533	0.00045846	3.6897	0.0016059	435.24415164078596	22.918	0.31328	22.918	22.755	23.069	0					15	6	3	0	0	0	0.55361	1	7706	7706		54.765	5.5539	1	685410	+		45305	14585	29936	30058	45891	45891					0.03332825765153302
VAPNTSTNL	9	Unmodified	_VAPNTSTNL_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7405090332031	2	458.740357	915.46616	0.064917	2.978E-05	0.38872	0.00017832	0.45364	0.0002081	458.7404016308653	27.661	0.22795	27.661	27.565	27.792	0					11	7	2	0	0	0	0.21419	1	8555	8555		59.931	17.067	1	112190			45306	5546	29937	30059	45892	45892					0.005046041381206123
VAPRACVQGA	10	Unmodified	_VAPRACVQGA_					0	0	0			REV__nc|ENSG00000160271|Q12967-5|RALGDS	REV__nc|ENSG00000160271|Q12967-5|RALGDS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2584228515625	2	486.258194	970.501834	-0.29135	-0.00014167	1.5835	0.00076997	1.2921	0.0006283	486.25918194036666	11.871	2.0089	11.871	11.735	13.744	0					147	61	5	0	0	0	0.4943	1	2482	2482		45.952	1.4209	1	35520000	+		45307	21090	29938	30060	45893	45893					0.01540363114156662
VAPRAVGVGN	10	Unmodified	_VAPRAVGVGN_					0	0	0		ENST00000592881.1_1_19:56146495-56146537:+|nuORF	ENST00000592881.1_1_19:56146495-56146537:+|nuORF	ENST00000592881.1_1_19:56146495-56146537:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.271240234375	2	470.272158	938.529764	-0.63013	-0.00029633	-0.053592	-2.5203E-05	-0.68372	-0.00032154	470.27214821766063	51.053	0.16542	51.053	51.003	51.169	0					16	10	2	0	0	0	0.7005	1	18302	18302		21.96	1.013	1	72682			45308	10974	29939	30061	45894	45894					0.05804009365908769
VAPRSCPT	8	Unmodified	_VAPRSCPT_					0	0	0			REV__ENST00000418310.5_1_7:73535775-73536204:+|nuORF	REV__ENST00000418310.5_1_7:73535775-73536204:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.7129821777344	2	415.713088	829.411622	-0.78603	-0.00032676	0.15413	6.4072E-05	-0.63191	-0.00026269	415.71329213165706	20.649	0.19677	20.649	20.551	20.748	0					11	4	4	0	0	0	0.41952	1	6431	6431		68.485	2.5872	1	1894700	+		45309	19052	29940	30062	45895	45895					-0.009906862142656792
VAPSTVKEV	9	Unmodified	_VAPSTVKEV_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;MAP4|p.G501D|1|0.04|ENSG00000047849|chr3:47916325-47916325|C/T|missense_variant	nc|ENSG00000047849|P27816-6|MAP4;MAP4|p.G501D|1|0.04|ENSG00000047849|chr3:47916325-47916325|C/T|missense_variant	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2684631347656	2	465.26875	928.522947	-0.68166	-0.00031715	-0.72662	-0.00033807	-1.4083	-0.00065523	465.2686464898655	23.17	0.27492	23.17	23.08	23.354	0					12	6	3	0	0	0	0.11898	1	7624	7624		75.043	3.1658	1	1784900			45310	1224;11346	29941	30063	45896	45896					0.05582651694658125
VAPTLRSEL	9	Unmodified	_VAPTLRSEL_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;PDGFRA|p.N780Tfs*17|1|0.45|ENSG00000134853|chr4:54285382-54285382|A/-|frameshift_variant	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2875061035156	2	493.287474	984.560395	-0.4985	-0.00024591	0.070278	3.4667E-05	-0.42823	-0.00021124	493.2874736212775	32.705	0.33333	32.705	32.571	32.904	0					21	8	4	0	0	0	0.40353	1	12023	12023		41.427	9.8968	1	1098300			45311	3946	29942	30064	45897	45897					0.06749742960278127
VAPVPPGAAPA	11	Unmodified	_VAPVPPGAAPA_					0	0	0		nc|ENSG00000147689|Q86UY5-2|FAM83A;nc|ENSG00000147689|Q86UY5-3|FAM83A;ENSG00000147689|ENST00000690554|FAM83A	nc|ENSG00000147689|Q86UY5-2|FAM83A	nc|ENSG00000147689|Q86UY5-2|FAM83A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7711181640625	2	473.77146	945.528367	-0.58773	-0.00027845	0.51049	0.00024186	-0.077239	-3.6594E-05	473.771693801397	31.976	0.21803	31.976	31.918	32.136	0					7	4	2	0	0	0	0.42078	1	12048	12048		50.025	0	1	248690			45312	4794	29943	30065	45898	45898					0.05342375277132305
VAQENAVK	8	Unmodified	_VAQENAVK_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant;ENSG00000168769|ENST00000380013|TET2;TET2|p.M695Tfs*4|1|0.41|ENSG00000168769|chr4:105236026-105236029|TGTC/-|frameshift_variant;TET2|p.N202Tfs*5|1|0.32|ENSG00000168769|chr4:105234543-105234543|A/-|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.7378845214844	2	429.737617	857.460681	0.18558	7.9749E-05	-0.31784	-0.00013659	-0.13226	-5.6839E-05	429.73751502474005	14.937	0.26902	14.937	14.764	15.033	0					18	13	2	0	0	0	0.49216	1	3234	3234		60.972	5.4677	1	179850			45313	6121	29944	30066	45899	45899					0.026249253463333844
VAQGASKAL	9	Unmodified	_VAQGASKAL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.74786376953125	2	422.747985	843.481417	-0.02844	-1.2023E-05	0.55445	0.00023439	0.52601	0.00022237	422.74800593440756	19.021	0.1484	19.021	18.928	19.077	0					7	3	3	0	0	0	0.04067	1	5079	5079		98.582	5.3865	1	146320			45314	11803	29945	30067	45900	45900					0.053415157259905754
VAQGASKAL	9	Unmodified	_VAQGASKAL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.74798583984375	2	422.747985	843.481417	-0.34402	-0.00014543	0.31905	0.00013488	-0.024967	-1.0555E-05	422.7481810111493	19.153	0.41416	19.153	18.846	19.26	0					10	8	2	0	0	0	0.085655	1	5877	5877		82.75	5.9763	1	1235800			45315	11803	29945	30067	45901	45901					0.053415157259905754
VAQGASKAL	9	Unmodified	_VAQGASKAL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7479553222656	2	422.747985	843.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.163	1	19.163	18.663	19.663	0								0	0	0	0.029433	1	5872	5872		96.034	2.8381	1				45316	11803	29945	30067	45902	45902					0.053415157259905754
VAQGASKAL	9	Unmodified	_VAQGASKAL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.7477722167969	2	422.747985	843.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.2	1	19.2	18.7	19.7	0								0	0	0	0.20989	1	5890	5890		49.536	1.8787	1				45317	11803	29945	30067	45903	45903					0.053415157259905754
VAQGGGRAL	9	Unmodified	_VAQGGGRAL_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.73834228515625	2	414.737951	827.46135	0.57617	0.00023896	-0.23818	-9.8784E-05	0.33798	0.00014017	414.7379057958639	18.27	0.084263	18.27	18.209	18.294	0					6	3	2	0	0	0	0.14603	1	4518	4518		68.787	5.8084	1	100130			45318	4396	29946	30068	45904	45904					0.04071764786033327
VAQGGGRAL	9	Unmodified	_VAQGGGRAL_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.7377624511719	2	414.737951	827.46135	-0.16496	-6.8415E-05	-0.24842	-0.00010303	-0.41338	-0.00017144	414.7378887657204	18.277	0.10857	18.277	18.202	18.311	0					7	4	2	0	0	0	0.087582	1	4513	4513		82.305	22.011	1	87665			45319	4396	29946	30068	45905	45905					0.04071764786033327
VAQGGGRAL	9	Unmodified	_VAQGGGRAL_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.7377624511719	2	414.737951	827.46135	-0.75817	-0.00031444	0.42529	0.00017638	-0.33288	-0.00013806	414.7380934344157	18.596	0.26066	18.596	18.501	18.762	0					12	6	3	0	0	0	0.036372	1	5461	5461		102.77	36.97	1	897870			45320	4396	29946	30068	45906	45906					0.04071764786033327
VAQGGGRAL	9	Unmodified	_VAQGGGRAL_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.737548828125	2	414.737951	827.46135	-1.4683	-0.00060895	1.2618	0.00052331	-0.2065	-8.5641E-05	414.7384752475179	18.265	0.13345	18.265	18.204	18.337	0					13	5	3	0	0	0	0.20551	1	4736	4736		60.972	10.947	1	287260			45321	4396	29946	30068	45907	45907					0.04071764786033327
VAQGGGRAL	9	Unmodified	_VAQGGGRAL_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.7377624511719	2	414.737951	827.46135	-0.065921	-2.734E-05	-0.082852	-3.4362E-05	-0.14877	-6.1702E-05	414.7378698523043	18.338	0.1208	18.338	18.266	18.387	0					5	3	2	0	0	0	0.05357	1	4774	4774		94.006	19.49	1	198300			45322	4396	29946	30068	45908	45908					0.04071764786033327
VAQGGGRAL	9	Unmodified	_VAQGGGRAL_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.73785400390625	2	414.737951	827.46135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.56	1	18.56	18.06	19.06	0								0	0	0	0.3304	1	5578	5578		29.15	2.3535	1				45323	4396	29946	30068	45909	45909					0.04071764786033327
VAQGSGLL	8	Unmodified	_VAQGSGLL_					0	0	0			REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.7173767089844	2	372.716153	743.417754	0.78528	0.00029269	2.6648	0.00099323	3.4501	0.0012859	372.71711796283313	36.545	0.18907	36.545	36.419	36.608	0					8	5	2	0	0	0	0.74117	1	13783	13783		28.254	4.0515	1	60429	+		45324	19533	29947	30069	45910	45910					0.03578155288914786
VAQKNYFNI	9	Unmodified	_VAQKNYFNI_					0	0	0		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.7935791015625	2	548.792924	1095.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.361	1	38.361	37.861	38.861	0								0	0	0	0.3368	1	12940	12940		27.882	2.4321	1				45325	4776	29948	30070	45911	45911					0.027331453345595946
VAQKNYFNI	9	Unmodified	_VAQKNYFNI_					0	0	0		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7938232421875	2	548.792924	1095.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.572	1	38.572	38.072	39.072	0								0	0	0	0.1219	1	15139	15139		66.429	20.457	1				45326	4776	29948	30070	45912	45912					0.027331453345595946
VAQKWINAK	9	Unmodified	_VAQKWINAK_					0	0	0			REV__DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant	REV__DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.3094482421875	2	529.311284	1056.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.612	1	19.612	19.112	20.112	0								0	0	0	0.28996	1	6229	6229		37.159	2.9866	1		+		45327	12743	29949	30071	45913	45913					0.081974419511198
VAQLASLVKH	10	Unmodified	_VAQLASLVKH_					0	0	0			REV__ENSG00000135744|ENST00000366667|AGT	REV__ENSG00000135744|ENST00000366667|AGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	355.8853454589844	3	355.885353	1064.63423	0.48866	0.00017391	-0.86229	-0.00030688	-0.37364	-0.00013297	355.88491861051	18.291	0.78669	18.291	17.975	18.762	0					24	14	4	0	0	0	0.35046	1	5310	5310		61.691	3.4614	1	3208800	+		45328	14817	29950	30072	45914	45914					0.1044971112262374
VAQNSGLTL	9	Unmodified	_VAQNSGLTL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.7503662109375	2	451.750724	901.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.797	1	37.797	37.297	38.297	0								0	0	0	0.040851	1	14802	14802		90.37	19.074	1				45329	7845	29951	30073	45915	45915					0.03221194517800541
VAQPTPPTK	9	Unmodified	_VAQPTPPTK_					0	0	0			REV__PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant	REV__PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.2664489746094	2	469.768917	937.523281	-0.12574	-5.9068E-05	-3.5759	-0.0016798	-3.7016	-0.0017389	469.7686803889074	19.563	0.2631	19.563	19.43	19.693	0					11	5	3	0	0	0	0.37197	1	6227	6227		44.117	3.5442	1	669540	+		45330	21360	29952	30074	45916	45916					0.0520207141452147
VAQPTRLPL	9	Unmodified	_VAQPTRLPL_					0	0	0			REV__CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant	REV__CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	332.206298828125	3	332.206315	993.597115	1.646	0.00054681	-1.8093	-0.00060105	-0.16328	-5.4242E-05	332.2057394788776	16.788	0.16262	16.788	16.681	16.844	0					8	3	3	0	0	0	0.4966	1	4736	4736		32.812	0	1	1111300	+		45331	12656	29953	30075	45917	45917					0.10006039576853709
VAQPVPLLM	9	Unmodified	_VAQPVPLLM_					0	0	0		ESPNL|p.V650Cfs*35|2|0.42|ENSG00000144488|chr2:238130657-238130657|G/-|frameshift_variant;ENSG00000144488|ENST00000343063|ESPNL	ESPNL|p.V650Cfs*35|2|0.42|ENSG00000144488|chr2:238130657-238130657|G/-|frameshift_variant	ESPNL|p.V650Cfs*35|2|0.42|ENSG00000144488|chr2:238130657-238130657|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	323.1941833496094	3	323.193018	966.557224	2.9943	0.00096775	0.55203	0.00017841	3.5464	0.0011462	323.19320702153277	14.129	0.11495	14.129	14.073	14.188	0					6	2	3	0	0	0	0.55282	1	3460	3460		34.173	34.173	1	556380			45332	4620	29954	30076	45918	45918					0.07260776581927075
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	370.8927001953125	3	370.892507	1109.65569	0.49053	0.00018194	-0.54652	-0.0002027	-0.055982	-2.0763E-05	370.89217781313306	21.32	0.19144	21.32	21.135	21.326	0					9	5	2	0	0	0	0.58189	1	5815	5815		65.157	28.84	1	96587			45333	8001	29955	30077	45919	45919					0.10525096151332036
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	370.8923645019531	3	370.892507	1109.65569	0.77617	0.00028788	-1.262	-0.00046805	-0.48579	-0.00018018	370.89197494355716	21.557	0.74605	21.557	21.135	21.881	0					28	17	3	0	0	0	0.38194	1	6864	6864		89.029	53.877	1	1635600			45334	8001	29955	30077	45920	45920					0.10525096151332036
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.83642578125	2	555.835123	1109.65569	4.476	0.0024879	-2.6873	-0.0014937	1.7887	0.00099421	555.8338172083444	21.277	0.20538	21.277	21.131	21.337	0					13	6	3	0	0	0	0.5155	1	6073	6073		43.651	0.78652	1	72649			45335	8001	29955	30077	45921	45921					0.10525096151332036
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.8355712890625	2	555.835123	1109.65569	0.54578	0.00030336	-0.059265	-3.2942E-05	0.48651	0.00027042	555.8350834666742	21.478	0.31855	21.478	21.273	21.592	0					20	6	4	0	0	0	0.11048	1	7096	7096		93.598	20.718	1	851460			45336	8001	29955	30077	45922	45922					0.10525096151332036
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.8356323242188	2	555.835123	1109.65569	1.1045	0.00061394	-0.24442	-0.00013586	0.86011	0.00047808	555.8349531362586	21.473	0.31546	21.473	21.288	21.603	0					18	6	4	0	0	0	0.28675	1	6992	6992		68.846	12.412	1	1005800			45337	8001	29955	30077	45923	45923					0.10525096151332036
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.89239501953125	3	370.892507	1109.65569	0.82331	0.00030536	-1.4327	-0.00053139	-0.60942	-0.00022603	370.8918933829719	21.466	0.56845	21.466	21.271	21.84	0					23	11	4	0	0	0	0.19191	1	6988	6988		112.3	43.67	1	2073900			45338	8001	29955	30077	45924	45924					0.10525096151332036
VAQRDYEKA	9	Unmodified	_VAQRDYEKA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.5207214355469	3	360.520851	1078.54072	-0.067059	-2.4176E-05	-0.19085	-6.8804E-05	-0.2579	-9.298E-05	360.52075414577246	16.359	0.21509	16.359	16.3	16.515	0					9	4	3	0	0	0	0.51817	1	4522	4522		30.318	0	1	1990100			45339	3331	29956	30078	45925	45925					0.004593669495079666
VAQSLVFP	8	Unmodified	_VAQSLVFP_					0	0	0		nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	430.7450866699219	2	430.747453	859.480354	-2.8597	-0.0012318	-1.4806	-0.00063778	-4.3404	-0.0018696	430.7468267126169	23.981	0.20166	23.981	23.877	24.078	0					12	5	3	0	0	0	0.34985	1	7388	7388		76.847	0	1	314220			45340	11476	29957	30079	45926	45926					0.04499301357088825
VAQSTRIIY	9	Unmodified	_VAQSTRIIY_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.8006591796875	2	525.800749	1049.58694	0.098223	5.1646E-05	0.28361	0.00014912	0.38184	0.00020077	525.8007934129051	30.441	0.25616	30.441	30.354	30.61	0					13	6	3	0	0	0	0.25761	1	10983	10983		54.722	28.029	1	640000			45341	2684	29958	30080	45927	45927					0.06413431851638052
VAQSTRIIY	9	Unmodified	_VAQSTRIIY_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.80126953125	2	525.800749	1049.58694	0.52805	0.00027765	0.80295	0.00042219	1.331	0.00069984	525.8010712200513	30.211	0.23906	30.211	30.118	30.357	0					12	8	2	0	0	0	0.33044	1	9895	9895		47.657	10.498	1	203900			45342	2684	29958	30080	45928	45928					0.06413431851638052
VAQSTRIIY	9	Unmodified	_VAQSTRIIY_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8013305664062	2	525.800749	1049.58694	1.7706	0.00093099	-0.81564	-0.00042887	0.95498	0.00050213	525.8003513330476	30.426	0.3881	30.426	30.306	30.694	0					14	8	2	0	0	0	0.12278	1	11374	11374		74.165	39.013	1	914250			45343	2684	29958	30080	45929	45929					0.06413431851638052
VAQSTRIIY	9	Unmodified	_VAQSTRIIY_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8012084960938	2	525.800749	1049.58694	-1.2343	-0.00064898	2.1333	0.0011217	0.89905	0.00047272	525.8019341069275	30.216	0.29243	30.216	30.094	30.386	0					11	7	2	0	0	0	0.47473	1	10251	10251		35.152	8.3559	1	240710			45344	2684	29958	30080	45930	45930					0.06413431851638052
VAQSVFGHI	9	Unmodified	_VAQSVFGHI_					0	0	0		MYBBP1A|p.R671Q|1|0.47|ENSG00000132382|chr17:4545671-4545671|C/T|missense_variant	MYBBP1A|p.R671Q|1|0.47|ENSG00000132382|chr17:4545671-4545671|C/T|missense_variant	MYBBP1A|p.R671Q|1|0.47|ENSG00000132382|chr17:4545671-4545671|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2715148925781	2	479.261259	956.507966	0.90653	0.00043447	1.569	0.00075197	2.4756	0.0011864	479.2618775927094	23.978	0.41548	23.978	23.914	24.33	0					14	8	3	0	0	0	0.2873	1	8193	8193		51.335	6.8044	1	212730			45345	11391	29959	30081	45931	45931					0.02797204617343141
VAQWRDRW	8	Unmodified	_VAQWRDRW_					0	0	0			REV__nc|ENSG00000105711|Q07699-2|SCN1B	REV__nc|ENSG00000105711|Q07699-2|SCN1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.861328125	3	372.86143	1115.56246	0.86556	0.00032273	-0.95234	-0.00035509	-0.086782	-3.2358E-05	372.86118946511453	20.57	1.0671	20.57	20.011	21.078	0					31	21	2	0	0	0	0.76283	1	6700	6700		20.947	4.9402	1	948710	+		45346	20963	29960	30082	45932	45932					0.009302164887458275
VARDREVL	8	Unmodified	_VARDREVL_					0	0	0			REV__ENST00000559266.5_1_15:58285255-58306437:-|nuORF	REV__ENST00000559266.5_1_15:58285255-58306437:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2767639160156	2	479.277441	956.540328	0.66221	0.00031738	-0.32892	-0.00015764	0.33329	0.00015974	479.27719127091274	48.484	1.2038	48.484	48.162	49.366	0					103	72	2	0	0	0	0.79567	1	18530	18530		17.365	0	1	170910	+		45347	14533	29961	30083	45933	45933					0.06031992020314192
VAREHRQK	8	Unmodified	_VAREHRQK_					0	0	0		ENST00000405727.6_1_4:153784845-153793645:+|nuORF	ENST00000405727.6_1_4:153784845-153793645:+|nuORF	ENST00000405727.6_1_4:153784845-153793645:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2952270507812	2	512.293956	1022.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.4	1	18.4	17.9	18.9	0								0	0	0	1.7419	1	4794	4794		38.806	19.703	1				45348	9280	29962	30084	45934	45934					0.06297618863038679
VAREKKGEK	9	Unmodified	_VAREKKGEK_					0	0	0			REV__ENSG00000117528|ENST00000370214|ABCD3	REV__ENSG00000117528|ENST00000370214|ABCD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.8768615722656	3	348.876857	1043.60874	1.4821	0.00051707	-1.0647	-0.00037146	0.41737	0.00014561	348.87647685853983	13.663	0.11021	13.663	13.605	13.715	0					4	2	2	0	0	0	0.51817	1	3240	3240		23.523	0	1	148080	+		45349	14200	29963	30085	45935	45935					0.08868236600187629
VARMHEAK	8	Unmodified	_VARMHEAK_					0	0	0		SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2532653808594	2	471.252911	940.49127	-0.42047	-0.00019815	0.6873	0.00032389	0.26683	0.00012575	471.2534213487392	13.493	0.10472	13.493	13.428	13.533	0					9	5	3	0	0	0	0.66372	1	2649	2649		38.806	8.3025	1	212260			45350	22486	29964	30086	45936	45936					0.01864380459721815
VARMHEAK	8	Unmodified	_VARMHEAK_					0	0	0		SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	SPG7|p.G313R|1|0.31|ENSG00000197912|chr16:89530758-89530758|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.252685546875	2	471.252911	940.49127	-0.82575	-0.00038914	1.6146	0.00076088	0.78884	0.00037174	471.253645878212	13.513	0.080292	13.513	13.47	13.55	0					7	4	2	0	0	0	0.61938	1	2791	2791		45.952	3.4775	1	413250			45351	22486	29964	30086	45937	45937					0.01864380459721815
VARPRRSR	8	Unmodified	_VARPRRSR_					0	0	0		ENSG00000183644|ENST00000375618|HOATZ;nc|ENSG00000183644|Q6PI97-2|HOATZ;nc|ENSG00000183644|Q6PI97-3|HOATZ	ENSG00000183644|ENST00000375618|HOATZ	ENSG00000183644|ENST00000375618|HOATZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.31103515625	2	499.309941	996.605329	2.9178	0.0014569	-0.66622	-0.00033265	2.2516	0.0011243	499.3096180845933	18.597	0.16404	18.597	18.489	18.653	0					9	3	3	0	0	0	0.6088	1	5610	5610		37.159	1.5408	1	660420			45352	6974	29965	30087	45938	45938					0.1068903133684671
VARPSLPSLAP	11	Unmodified	_VARPSLPSLAP_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.88873291015625	3	369.888874	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.344	1	19.344	18.844	19.844	0								0	0	0	0.39271	1	5821	5821		38.754	4.832	1		+		45353	15628	29966	30088	45939	45939					0.09573693777042536
VARSREKAV	9	Unmodified	_VARSREKAV_					0	0	0			REV__ENST00000470379.1_1_1:167408664-167408865:-|nuORF	REV__ENST00000470379.1_1_1:167408664-167408865:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	339.20477294921875	3	339.205085	1014.59343	-1.9304	-0.00065481	2.4407	0.00082791	0.5103	0.0001731	339.2055945786086	14.202	0.14971	14.202	14.162	14.312	0					13	7	2	0	0	0	0.54267	1	2965	2965		28.081	3.8787	1	93728	+		45354	19465	29967	30089	45940	45940					0.08671369802993922
VARVTQPA	8	Unmodified	_VARVTQPA_					0	0	0		MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant	MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant	MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	421.2478332519531	2	421.248152	840.481751	-1.2412	-0.00052285	1.0094	0.00042519	-0.23183	-9.7657E-05	421.24844943410716	20.777	0.18673	20.777	20.659	20.846	0					10	6	2	0	0	0	0.60719	1	5832	5832		47.916	0	1	137520			45355	11383	29968	30090	45941	45941					0.05512935445858602
VASAAKLGA	9	Unmodified	_VASAAKLGA_					0	0	0		nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL	nc|ENSG00000170835|P19835-2|CEL	nc|ENSG00000170835|P19835-2|CEL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.23748779296875	2	394.237253	786.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.788	1	18.788	18.288	19.288	0								0	0	0	0.21054	1	4736	4736		49.442	3.4896	1				45356	6261	29969	30091	45942	45942					0.05818130697275592
VASAAKLGA	9	Unmodified	_VASAAKLGA_					0	0	0		nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL	nc|ENSG00000170835|P19835-2|CEL	nc|ENSG00000170835|P19835-2|CEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	394.2373962402344	2	394.237253	786.459953	3.4814	0.0013725	-3.2	-0.0012615	0.28144	0.00011095	394.23599088662314	18.777	0.13336	18.777	18.713	18.846	0					7	4	2	0	0	0	0.37197	1	4975	4975		44.117	3.3386	1	288000			45357	6261	29969	30091	45943	45943					0.05818130697275592
VASAAKLGA	9	Unmodified	_VASAAKLGA_					0	0	0		nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL	nc|ENSG00000170835|P19835-2|CEL	nc|ENSG00000170835|P19835-2|CEL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.237060546875	2	394.237253	786.459953	0.11432	4.507E-05	-0.38655	-0.00015239	-0.27223	-0.00010732	394.2370572150211	19.042	0.21405	19.042	18.934	19.148	0					9	4	3	0	0	0	0.099922	1	5937	5937		79.451	0	1	1192400			45358	6261	29969	30091	45944	45944					0.05818130697275592
VASAASASAAI	11	Unmodified	_VASAASASAAI_					0	0	0			REV__ENST00000296933.10_1_5:171433486-171433849:-|nuORF	REV__ENST00000296933.10_1_5:171433486-171433849:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.74774169921875	2	459.748182	917.481811	0.7223	0.00033208	-1.5958	-0.00073367	-0.87351	-0.0004016	459.7474127505365	19.518	0.26318	19.518	19.412	19.676	0					11	5	3	0	0	0	0.42875	1	6222	6222		49.442	7.0454	1	1144500	+		45359	18185	29970	30092	45945	45945					0.01976890655180341
VASAPWSWL	9	Unmodified	_VASAPWSWL_					0	0	0		TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.76318359375	2	508.763635	1015.51272	-0.021452	-1.0914E-05	-0.79398	-0.00040395	-0.81544	-0.00041486	508.76337222537563	15.436	0.62853	15.436	15.269	15.897	0					25	15	4	0	0	0	0.32741	1	3998	3998		47.916	1.9636	1	741260			45360	7688	29971	30093	45946	45946					0.005580887600899587
VASEASKKK	9	Unmodified	_VASEASKKK_					0	0	0		ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.27899169921875	2	474.279649	946.544745	0.60776	0.00028825	-0.57495	-0.00027269	0.032807	1.5559E-05	474.27921581700525	49.585	0.33303	49.585	49.381	49.714	0					17	12	2	0	0	0	0.48389	1	18583	18583		34.173	0	1	51381			45361	1593	29972	30094	45947	45947					0.06933456443232444
VASHPQCTLC	10	Unmodified	_VASHPQCTLC_					0	0	0		ENST00000551077.1_1_15:25309923-25312611:+|nuORF	ENST00000551077.1_1_15:25309923-25312611:+|nuORF	ENST00000551077.1_1_15:25309923-25312611:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7452392578125	2	529.741519	1057.46849	1.7349	0.00091903	3.5755	0.0018941	5.3104	0.0028131	529.7442299028947	30	1.188	30	28.96	30.148	0					40	25	3	0	0	0	0.60076	1	11161	11161		34.173	1.3601	1	763650			45362	10621	29973	30095	45948	45948					-0.05795006720040874
VASHPRRR	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VASHPRRR_					1	0	0		ENST00000403045.6_1_2:70995120-70995228:-|nuORF	ENST00000403045.6_1_2:70995120-70995228:-|nuORF	ENST00000403045.6_1_2:70995120-70995228:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.79541015625	2	510.794124	1019.57369	1.3847	0.00070728	1.1427	0.00058368	2.5274	0.001291	510.7948337381299	35.271	0.57174	35.271	35.065	35.637	0					31	11	4	0	0	0	0.54629	1	13611	13611		55.504	55.504	1	3037700			45363	9260	29974	30096	45949	45949					0.06469038582895337
VASILSQLG	9	Unmodified	_VASILSQLG_					0	0	0			REV__ENSG00000149150|ENST00000278426|SLC43A1	REV__ENSG00000149150|ENST00000278426|SLC43A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.26385498046875	2	444.263468	886.512382	-0.21368	-9.4929E-05	0.37988	0.00016877	0.16621	7.3839E-05	444.26367605837777	33.275	0.18586	33.275	33.187	33.373	0					9	4	3	0	0	0	0.44593	1	12735	12735		37.812	0	1	58487	+		45364	15404	29975	30097	45950	45950					0.06458669040250697
VASILSQLG	9	Unmodified	_VASILSQLG_					0	0	0			REV__ENSG00000149150|ENST00000278426|SLC43A1	REV__ENSG00000149150|ENST00000278426|SLC43A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2640380859375	2	444.263468	886.512382	-0.48024	-0.00021335	1.3924	0.00061858	0.91213	0.00040523	444.26416052589656	33.258	0.16581	33.258	33.151	33.317	0					6	3	2	0	0	0	0.25716	1	12637	12637		54.776	0	1	156380	+		45365	15404	29975	30097	45951	45951					0.06458669040250697
VASLHLPSFY	10	Unmodified	_VASLHLPSFY_					0	0	0		AHCYL1|p.D501Y|1|0.33|ENSG00000168710|chr1:110020766-110020766|G/T|missense_variant	AHCYL1|p.D501Y|1|0.33|ENSG00000168710|chr1:110020766-110020766|G/T|missense_variant	AHCYL1|p.D501Y|1|0.33|ENSG00000168710|chr1:110020766-110020766|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	567.3033447265625	2	567.303124	1132.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.353	1	15.353	14.853	15.853	0								0	0	0	0.4201	1	3484	3484		15.642	0	1				45366	98	29976	30098	45952	45952					0.030703159943641367
VASNEKVK	8	Unmodified	_VASNEKVK_					0	0	0			REV__nc|ENSG00000123600|Q9H825-2|METTL8	REV__nc|ENSG00000123600|Q9H825-2|METTL8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7530517578125	2	437.753267	873.491981	-0.392	-0.0001716	-0.1583	-6.9298E-05	-0.5503	-0.0002409	437.75314587665434	21.605	0.23352	21.605	21.504	21.738	0					10	5	3	0	0	0	0.29286	1	6901	6901		84.916	5.2029	1	674760	+		45367	14366	29977	30099	45953	45953					0.050174983804254225
VASPCNEE	8	Unmodified	_VASPCNEE_					0	0	0			REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.6773681640625	2	424.676368	847.338183	0.37419	0.00015891	1.9154	0.00081342	2.2896	0.00097233	424.67720986967623	13.773	0.30345	13.773	13.67	13.974	0					11	6	3	0	0	0	0.64096	1	3435	3435		42.474	8.9589	1	409490	+		45368	14753	29978	30100	45954	45954					-0.09159279447408153
VASPRMDPK	9	Unmodified	_VASPRMDPK_					0	0	0		ENST00000492406.5_1_3:112280909-112281080:+|nuORF	ENST00000492406.5_1_3:112280909-112281080:+|nuORF	ENST00000492406.5_1_3:112280909-112281080:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7657470703125	2	500.765852	999.51715	-0.04632	-2.3196E-05	-0.55595	-0.0002784	-0.60227	-0.0003016	500.7657637123909	20.275	0.26854	20.275	20.191	20.459	0					20	9	4	0	0	0	0.12239	1	5385	5385		74.255	5.4682	1	2271700			45369	10081	29979	30101	45955	45955					0.017372299113503686
VASPRMDPK	9	Unmodified	_VASPRMDPK_					0	0	0		ENST00000492406.5_1_3:112280909-112281080:+|nuORF	ENST00000492406.5_1_3:112280909-112281080:+|nuORF	ENST00000492406.5_1_3:112280909-112281080:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7657775878906	2	500.765852	999.51715	-1.071	-0.00053634	0.45436	0.00022753	-0.61667	-0.00030881	500.7662519927258	20.323	0.21395	20.323	20.254	20.468	0					17	6	4	0	0	0	0.071197	1	5643	5643		87.754	5.4493	1	2302100			45370	10081	29979	30101	45956	45956					0.017372299113503686
VASPSASANRT	11	Unmodified	_VASPSASANRT_					0	0	0			REV__ENSG00000130700|ENST00000252997|GATA5	REV__ENSG00000130700|ENST00000252997|GATA5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.18560791015625	3	354.184238	1059.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.855	1	22.855	22.355	23.355	0								0	0	0	0.45674	1	6879	6879		18.531	0	1		+		45371	14593	29980	30102	45957	45957					0.003501789441543224
VASPSPSGSVL	11	Unmodified	_VASPSPSGSVL_					0	0	0		ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.76861572265625	2	500.769114	999.523675	-0.99238	-0.00049695	0.38221	0.0001914	-0.61017	-0.00030556	500.7693221043198	35.097	0.24026	35.097	34.914	35.154	0					27	10	3	0	0	0	0.23884	1	11834	11834		69.628	0	1	258100			45372	5344	29981	30103	45958	45958					0.023894463437159175
VASPSPSGSVL	11	Unmodified	_VASPSPSGSVL_					0	0	0		ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.76922607421875	2	500.769114	999.523675	0.91872	0.00046007	-1.5253	-0.00076385	-0.60662	-0.00030378	500.76842259745183	35.253	0.36862	35.253	35.064	35.433	0					23	10	4	0	0	0	0.058097	1	13641	13641		101.25	10.883	1	1667700			45373	5344	29981	30103	45959	45959					0.023894463437159175
VASQVSLRK	9	Unmodified	_VASQVSLRK_					0	0	0		ENST00000366767.7_1_1:227178271-227178454:-|nuORF	ENST00000366767.7_1_1:227178271-227178454:-|nuORF	ENST00000366767.7_1_1:227178271-227178454:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.8696594238281	3	329.869703	986.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.776	1	16.776	16.276	17.276	0								0	0	0	0.13522	1	4715	4715		69.628	0	1				45374	8899	29982	30104	45960	45960					0.09344851571484014
VASRATVL	8	Unmodified	_VASRATVL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	408.7500915527344	2	408.750527	815.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.208	1	24.208	23.708	24.708	0								0	0	0	1.7419	1	8119	8119		47.916	0	1				45375	3083	29983	30105	45961	45961					0.07137819588615457
VASSLDVQA	9	Unmodified	_VASSLDVQA_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.23455810546875	2	445.234907	888.455261	0.59538	0.00026508	-0.73677	-0.00032804	-0.1414	-6.2954E-05	445.2345528803796	24.661	0.26294	24.661	24.573	24.836	0					16	6	3	0	0	0	0.13267	1	8341	8341		71.877	2.2498	1	414710			45376	7864	29984	30106	45962	45962					0.006572017638632133
VASSRRPGR	9	Unmodified	_VASSRRPGR_					0	0	0		ENST00000607047.1_1_8:38240229-38240670:+|nuORF	ENST00000607047.1_1_8:38240229-38240670:+|nuORF	ENST00000607047.1_1_8:38240229-38240670:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2872009277344	2	493.286131	984.55771	2.7661	0.0013645	-0.72899	-0.0003596	2.0371	0.0010049	493.2859221341297	32.648	0.36949	32.648	32.54	32.909	0					17	7	4	0	0	0	0.51991	1	12342	12342		30.318	30.318	1	1252300			45377	11091	29985	30107	45963	45963					0.06481332346004365
VASSSTTIVG	10	Unmodified	_VASSSTTIVG_					0	0	0		nc|ENSG00000115252|P54750-3|PDE1A;nc|ENSG00000115252|P54750-8|PDE1A;nc|ENSG00000115252|P54750-9|PDE1A;nc|ENSG00000115252|P54750-2|PDE1A;ENSG00000115252|ENST00000409365|PDE1A;nc|ENSG00000115252|P54750|PDE1A;nc|ENSG00000115252|P54750-7|PDE1A;nc|ENSG00000115252|P54750-4|PDE1A;nc|ENSG00000115252|P54750-5|PDE1A	nc|ENSG00000115252|P54750-3|PDE1A	nc|ENSG00000115252|P54750-3|PDE1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.24761962890625	2	461.248015	920.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.426	1	25.426	24.926	25.926	0								0	0	0	0.33119	1	7650	7650		45.952	1.8352	1				45378	2893	29986	30108	45964	45964					0.01805470935357789
VASTKNHT	8	Unmodified	_VASTKNHT_					0	0	0			REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.2271728515625	2	429.227417	856.44028	-0.91669	-0.00039347	0.72918	0.00031299	-0.18751	-8.0483E-05	429.22770988528634	22.074	0.12965	22.074	21.978	22.108	0					7	4	2	0	0	0	0.68432	1	6437	6437		35.618	2.8059	1	132780	+		45379	17981	29987	30109	45965	45965					0.0063175468651479605
VASTVWSL	8	Unmodified	_VASTVWSL_					0	0	0			REV__ENST00000553497.1_1_14:70082246-70082456:+|nuORF	REV__ENST00000553497.1_1_14:70082246-70082456:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.7371826171875	2	431.737086	861.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.25	1	19.25	18.75	19.75	0								0	0	0	1.7419	1	4944	4944		40.573	0	1		+		45380	20222	29988	30110	45966	45966					0.023347109774249475
VASVEEQKHR	10	Unmodified	_VASVEEQKHR_					0	0	0			REV__SCN8A|p.R1892H|1|0.11|ENSG00000196876|chr12:51807161-51807161|G/A|missense_variant	REV__SCN8A|p.R1892H|1|0.11|ENSG00000196876|chr12:51807161-51807161|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.8118896484375	2	591.814919	1181.61528	-0.52152	-0.00030864	-4.1928	-0.0024814	-4.7144	-0.00279	591.8124427315933	29.677	0.11216	29.677	29.619	29.731	0					6	4	2	0	0	0	0.62235	1	9689	9689		31.53	0	1	54411	+		45381	21496	29989	30111	45967	45967					0.03174129760895994
VASVLSRLIQ	10	Unmodified	_VASVLSRLIQ_					0	0	0			REV__nc|ENSG00000162302|O75676-2|RPS6KA4	REV__nc|ENSG00000162302|O75676-2|RPS6KA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3378295898438	2	543.337498	1084.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.824	1	12.824	12.324	13.324	0								0	0	0	0.4201	1	2826	2826		14.137	1.9304	1		+		45382	15806	29990	30112	45968	45968					0.12149980294088891
VASWRLRC	8	Unmodified	_VASWRLRC_					0	0	0			REV__ENST00000593284.5_1_19:47996712-47998321:+|nuORF	REV__ENST00000593284.5_1_19:47996712-47998321:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7677917480469	2	495.768729	989.522904	-0.67243	-0.00033337	3.9393	0.001953	3.2668	0.0016196	495.77027225259974	29.051	0.61623	29.051	28.758	29.375	0					30	12	3	0	0	0	0.49216	1	10547	10547		60.972	5.4677	1	353740	+		45383	20549	29991	30113	45969	45969					0.027723732136792023
VASYPLLPQ	9	Unmodified	_VASYPLLPQ_					0	0	0			REV__ENSG00000177352|ENST00000321895|CCDC71	REV__ENSG00000177352|ENST00000321895|CCDC71	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.3005676269531	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.548	1	16.548	16.048	17.048	0								0	0	0	0.29774	1	3786	3786		35.618	1.4457	1		+		45384	16694	29992	30114	45970	45970					0.049872420743326984
VATASSLPPK	10	Unmodified	_VATASSLPPK_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7821350097656	2	485.782025	969.549496	-1.239	-0.00060189	0.82655	0.00040152	-0.41246	-0.00020037	485.7823411770097	29.773	0.55796	29.773	29.404	29.962	0					46	21	3	0	0	0	0.54197	1	9781	9781		40.778	4.3314	1	241920			45385	1357	29993	30115	45971	45971					0.06350340585993308
VATAWTRGRLD	11	Unmodified	_VATAWTRGRLD_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.8943176269531	3	415.894799	1244.66257	-0.34722	-0.00014441	-0.70267	-0.00029224	-1.0499	-0.00043664	415.8944759013104	22.147	0.16948	22.147	22.037	22.207	0					8	3	3	0	0	0	0.54316	1	7330	7330		41.08	8.3295	1	1466600	+		45386	15260	29994	30116	45972	45972					0.050024090318856906
VATEGSREL	9	Unmodified	_VATEGSREL_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.25091552734375	2	481.251089	960.487624	-0.13471	-6.4828E-05	-0.26965	-0.00012977	-0.40436	-0.0001946	481.2509593932758	21.905	0.22175	21.905	21.809	22.031	0					17	5	4	0	0	0	0.037712	1	7019	7019		101.46	48.523	1	867570			45387	2547	29995	30117	45973	45973					0.005799891668516466
VATEGSREL	9	Unmodified	_VATEGSREL_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.251708984375	2	481.251089	960.487624	-1.3483	-0.00064886	0.28767	0.00013844	-1.0606	-0.00051042	481.2516668818438	21.62	0.16905	21.62	21.546	21.715	0					10	5	4	0	0	0	0.27123	1	6219	6219		53.089	10.614	1	152730			45388	2547	29995	30117	45974	45974					0.005799891668516466
VATEGSREL	9	Unmodified	_VATEGSREL_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2511901855469	2	481.251089	960.487624	-0.53142	-0.00025575	0.017009	8.1856E-06	-0.51442	-0.00024756	481.2510874017976	21.801	0.16595	21.801	21.692	21.858	0					8	3	3	0	0	0	0.15558	1	7273	7273		66.962	14.025	1	570560			45389	2547	29995	30117	45975	45975					0.005799891668516466
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.27362060546875	2	480.274032	958.533512	0.032407	1.5564E-05	-0.52258	-0.00025098	-0.49017	-0.00023542	480.27366423482493	28.455	0.21583	28.455	28.368	28.584	0					16	8	3	0	0	0	0.21263	1	8883	8883		60.118	0	1	226430			45390	5628	29996	30118	45976	45976					0.05258634349092972
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27374267578125	2	480.274032	958.533512	0.67379	0.0003236	-1.676	-0.00080495	-1.0022	-0.00048134	480.2730324584321	28.72	0.36262	28.72	28.515	28.878	0					12	7	3	0	0	0	0.054723	1	10565	10565		93.598	15.334	1	1269200			45391	5628	29996	30118	45977	45977					0.05258634349092972
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.27386474609375	2	480.274032	958.533512	0.050343	2.4179E-05	-0.80116	-0.00038478	-0.75082	-0.0003606	480.273637135052	28.543	0.17483	28.543	28.453	28.628	0					7	4	2	0	0	0	0.3269	1	9477	9477		47.96	0	1	97780			45392	5628	29996	30118	45978	45978					0.05258634349092972
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2740478515625	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.539	1	28.539	28.039	29.039	0								0	0	0	0.18541	1	9486	9486		53.089	3.5529	1				45393	5628	29996	30118	45979	45979					0.05258634349092972
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.27410888671875	2	480.274032	958.533512	0.93143	0.00044734	-1.1732	-0.00056345	-0.24176	-0.00011611	480.2732549626331	28.684	0.4166	28.684	28.443	28.86	0					14	8	3	0	0	0	0.085655	1	10439	10439		82.75	5.4329	1	1368200			45394	5628	29996	30118	45980	45980					0.05258634349092972
VATFDDGKL	9	Unmodified	_VATFDDGKL_					0	0	0		tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.25042724609375	2	483.250557	964.486562	0.88067	0.00042559	-0.85253	-0.00041199	0.028141	1.3599E-05	483.25020482454994	44.61	0.28963	44.61	44.506	44.796	0					17	12	3	0	0	0	0.35021	1	17872	17872		45.972	0	1	188990			45395	22680	29997	30119	45981	45981					0.002897747979545784
VATGAAIKG	9	Unmodified	_VATGAAIKG_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.2376403808594	2	394.237253	786.459953	0.20861	8.2243E-05	0.79297	0.00031262	1.0016	0.00039486	394.2375277621766	18.823	0.14197	18.823	18.73	18.872	0					5	3	2	0	0	0	0.18605	1	4999	4999		63.306	0	1	169500	+		45396	18327	29998	30120	45982	45982					0.05818130697275592
VATGAAIKG	9	Unmodified	_VATGAAIKG_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	394.23724365234375	2	394.237253	786.459953	-0.6577	-0.00025929	0.53014	0.000209	-0.12756	-5.0287E-05	394.23753784386764	19.005	0.39296	19.005	18.719	19.112	0					13	8	3	0	0	0	0.047412	1	5782	5782		96.19	8.4361	1	1088700	+		45397	18327	29998	30120	45983	45983					0.05818130697275592
VATGAVRELLP	11	Unmodified	_VATGAVRELLP_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	375.892333984375	3	375.892396	1124.65536	0.7097	0.00026677	-1.1468	-0.00043107	-0.43709	-0.0001643	375.8919430602215	25.048	0.26529	25.048	24.94	25.205	0					12	5	4	0	0	0	0.63225	1	8857	8857		34.087	7.0392	1	816490	+		45398	13075	29999	30121	45984	45984					0.09801676431470696
VATGDLAIR	9	Unmodified	_VATGDLAIR_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.266357421875	2	458.266542	914.51853	-0.43941	-0.00020137	0.24271	0.00011122	-0.19671	-9.0145E-05	458.2666991162491	32.227	0.16756	32.227	32.119	32.287	0					6	3	2	0	0	0	0.13267	1	12142	12142		71.877	13.096	1	128980			45399	1035	30000	30122	45985	45985					0.05785187271749237
VATHSTLVL	9	Unmodified	_VATHSTLVL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7762145996094	2	470.776742	939.538931	-0.61038	-0.00028735	-2.109	-0.00099286	-2.7194	-0.0012802	470.77675841930096	32.899	0.34351	32.899	32.775	33.119	0					25	9	4	0	0	0	0.16524	1	12107	12107		65.803	9.3694	1	1119700			45400	1373	30001	30123	45986	45986					0.0667435793156983
VATITPKGPA	10	Unmodified	_VATITPKGPA_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.78424072265625	2	477.784567	953.554582	-0.30478	-0.00014562	-0.15735	-7.5177E-05	-0.46212	-0.00022079	477.784437555205	33.163	0.68294	33.163	32.814	33.497	0					45	18	3	0	0	0	0.28036	1	12304	12304		69.628	5.4204	1	983950	+		45401	15602	30002	30124	45987	45987					0.07594644448613508
VATLWMDK	8	Oxidation (M)	_VATLWM(Oxidation (M))DK_		VATLWM(1)DK		VATLWM(46)DK	0	0	1		nc|ENSG00000157326|Q9BTZ2-3|DHRS4	nc|ENSG00000157326|Q9BTZ2-3|DHRS4	nc|ENSG00000157326|Q9BTZ2-3|DHRS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2469787597656	2	490.249503	978.484453	-0.12361	-6.06E-05	1.1648	0.00057102	1.0412	0.00051042	490.2500531929315	24.799	0.42442	24.799	24.541	24.965	0					26	12	3	0	0	0	0.61925	1	7306	7306		45.972	6.7194	1	600860			45402	11601	30003	30125	45988	45988		451			-0.005649772114907137
VATLWMDK	8	Oxidation (M)	_VATLWM(Oxidation (M))DK_		VATLWM(1)DK		VATLWM(69)DK	0	0	1		nc|ENSG00000157326|Q9BTZ2-3|DHRS4	nc|ENSG00000157326|Q9BTZ2-3|DHRS4	nc|ENSG00000157326|Q9BTZ2-3|DHRS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2472229003906	2	490.249503	978.484453	-0.069131	-3.3892E-05	1.626	0.00079716	1.5569	0.00076327	490.25026058471593	25.065	0.51116	25.065	24.762	25.273	0					28	10	4	0	0	0	0.41701	1	8787	8787		68.787	15.435	1	4388800			45403	11601	30003	30125	45989	45989		451			-0.005649772114907137
VATPPTKLMHQ	11	Unmodified	_VATPPTKLMHQ_					0	0	0			REV__ENSG00000137822|ENST00000564079|TUBGCP4	REV__ENSG00000137822|ENST00000564079|TUBGCP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.226318359375	3	408.225269	1221.65398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.862	1	19.862	19.362	20.362	0								0	0	0	0.42918	1	6213	6213		30.569	5.4429	1		+		45404	14940	30004	30126	45990	45990					0.0520171907103304
VATPVLREL	9	Unmodified	_VATPVLREL_					0	0	0			REV__ENSG00000146247|ENST00000275034|PHIP	REV__ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.3064270019531	2	499.305667	996.596781	0.30029	0.00014994	0.29258	0.00014609	0.59287	0.00029602	499.30577387334574	30.485	0.39512	30.485	30.292	30.687	0					36	15	3	0	0	0	0.44593	1	9681	9681		30.504	1.3541	1	405600	+		45405	15308	30005	30127	45991	45991					0.09834619856997051
VATSQLQK	8	Unmodified	_VATSQLQK_					0	0	0		ENST00000433355.6_1_6:146231577-146267398:-|nuORF;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000519632.5_1_6:146239221-146248402:-|nuORF	ENST00000433355.6_1_6:146231577-146267398:-|nuORF	ENST00000433355.6_1_6:146231577-146267398:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.75299072265625	2	437.753267	873.491981	-0.94641	-0.0004143	0.02984	1.3063E-05	-0.91657	-0.00040123	437.75335283807283	21.286	0.1373	21.286	21.223	21.361	0					10	4	3	0	0	0	0.3961	1	6091	6091		71.296	0	1	368280			45406	4731	30006	30128	45992	45992					0.05017498380436791
VATTLASNY	9	Unmodified	_VATTLASNY_					0	0	0			REV__ENST00000490599.1_1_9:99083569-99086447:-|nuORF	REV__ENST00000490599.1_1_9:99083569-99086447:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.24249267578125	2	470.242732	938.470912	-0.53629	-0.00025219	-0.012191	-5.7327E-06	-0.54848	-0.00025792	470.24271345873075	23.642	0.16471	23.642	23.535	23.7	0					5	3	2	0	0	0	0.32741	1	8056	8056		47.916	6.489	1	281170	+		45407	14607	30007	30129	45993	45993					-0.0007851171909578625
VATTQSPT	8	Unmodified	_VATTQSPT_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;ENST00000482116.1_1_13:76423246-76430812:+|nuORF	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.7084045410156	2	402.708525	803.402498	0.04808	1.9362E-05	-0.61956	-0.0002495	-0.57148	-0.00023014	402.7083803893923	16.289	0.16768	16.289	16.179	16.347	0					6	3	2	0	0	0	0.30437	1	4637	4637		82.305	8.3303	1	268890			45408	4057	30008	30130	45994	45994					-0.00706756298950495
VATVRAGEAV	10	Unmodified	_VATVRAGEAV_					0	0	0			REV__MPHOSPH8|p.K169Qfs*28|1|0.35|ENSG00000196199|chr13:19646577-19646578|-/C|frameshift_variant	REV__MPHOSPH8|p.K169Qfs*28|1|0.35|ENSG00000196199|chr13:19646577-19646578|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.85382080078125	3	324.853941	971.539994	-0.66753	-0.00021685	0.5924	0.00019244	-0.075124	-2.4404E-05	324.8541220798097	19.823	0.12512	19.823	19.756	19.881	0					6	4	2	0	0	0	0.69166	1	5439	5439		28.081	2.5074	1	52355	+		45409	17232	30009	30131	45995	45995					0.05308572300475589
VAVAAGVGL	9	Unmodified	_VAVAAGVGL_					0	0	0		ENST00000400000.6_1_18:9914029-9931821:+|nuORF	ENST00000400000.6_1_18:9914029-9931821:+|nuORF	ENST00000400000.6_1_18:9914029-9931821:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	378.7343444824219	2	378.734346	755.454139	0.23203	8.7878E-05	-0.36672	-0.00013889	-0.13469	-5.1012E-05	378.7342103096365	19.289	0.41228	19.289	18.984	19.396	0					13	8	2	0	0	0	0.21025	1	6035	6035		60.404	7.0522	1	366030			45410	9243	30010	30132	45996	45996					0.06663032185610973
VAVAGILN	8	Unmodified	_VAVAGILN_					0	0	0		GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4	GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	378.7342224121094	2	378.734346	755.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.086	1	19.086	18.586	19.586	0								0	0	0	1.7419	1	5107	5107		54.765	0	1				45411	4880	30011	30133	45997	45997					0.06663032185599604
VAVATPAKK	9	Unmodified	_VAVATPAKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.7815856933594	2	442.781828	883.549102	-0.28988	-0.00012835	-0.53107	-0.00023515	-0.82095	-0.0003635	442.7816376358653	16.037	0.21079	16.037	15.891	16.102	0					14	9	2	0	0	0	0.30951	1	3578	3578		49.442	6.9671	1	79641			45412	2879	30012	30134	45998	45998					0.10266965656796856
VAVATPAKK	9	Unmodified	_VAVATPAKK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7815856933594	2	442.781828	883.549102	-0.34487	-0.0001527	-0.049811	-2.2056E-05	-0.39468	-0.00017476	442.7817907077684	16.369	0.31623	16.369	16.135	16.451	0					19	7	3	0	0	0	0.13267	1	4384	4384		71.877	18.526	1	596720			45413	2879	30012	30134	45999	45999					0.10266965656796856
VAVDRVLL	8	Unmodified	_VAVDRVLL_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.7816162109375	2	442.781828	883.549102	-2.9008	-0.0012844	2.8677	0.0012698	-0.033119	-1.4664E-05	442.7831639278348	16.083	0.19292	16.083	15.961	16.154	0					9	6	2	0	0	0	0.41952	1	3719	3719		68.485	5.5063	1	77793			45414	4277	30013	30135	46000	46000					0.10266965656808225
VAVDSTGTYM	10	Unmodified	_VAVDSTGTYM_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.2390747070312	2	522.239332	1042.46411	1.7811	0.00093014	-1.2929	-0.00067521	0.48815	0.00025493	522.2383795963037	37.062	0.13525	37.062	36.991	37.127	0					7	4	2	0	0	0	0.39566	1	14479	14479		56.721	10.769	1	139840			45415	7880	30014	30136	46001	46001					-0.055421926619601436
VAVDVAVPK	9	Unmodified	_VAVDVAVPK_					0	0	0		ENST00000567696.1_1_16:777422-777680:+|nuORF;ENST00000569143.1_1_16:777422-777998:+|nuORF;ENST00000561750.1_1_16:777422-778482:+|nuORF;nc|ENSG00000103253|Q6PII5-3|HAGHL;nc|ENSG00000103253|Q6PII5-4|HAGHL;ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL	ENST00000567696.1_1_16:777422-777680:+|nuORF	ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.2746887207031	2	449.273835	896.533118	0.061052	2.7429E-05	-0.57717	-0.00025931	-0.51612	-0.00023188	449.27386702217433	30.83	0.29049	30.83	30.571	30.861	0					15	12	2	0	0	0	0.25716	1	9832	9832		54.776	5.3348	1	58694			45416	2228	30015	30137	46002	46002					0.08071259419898524
VAVDVAVPK	9	Unmodified	_VAVDVAVPK_					0	0	0		ENST00000567696.1_1_16:777422-777680:+|nuORF;ENST00000569143.1_1_16:777422-777998:+|nuORF;ENST00000561750.1_1_16:777422-778482:+|nuORF;nc|ENSG00000103253|Q6PII5-3|HAGHL;nc|ENSG00000103253|Q6PII5-4|HAGHL;ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL	ENST00000567696.1_1_16:777422-777680:+|nuORF	ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.27374267578125	2	449.273835	896.533118	0.62422	0.00028044	-0.82998	-0.00037289	-0.20577	-9.2446E-05	449.27349754210974	31.131	0.56015	31.131	30.742	31.302	0					32	13	3	0	0	0	0.048471	1	11273	11273		95.815	18.969	1	414440			45417	2228	30015	30137	46003	46003					0.08071259419898524
VAVERARAL	9	Unmodified	_VAVERARAL_					0	0	0		nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	nc|ENSG00000126217|O15068-5|MCF2L	nc|ENSG00000126217|O15068-5|MCF2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.80072021484375	2	492.801083	983.587613	-2.6174	-0.0012898	2.135	0.0010521	-0.48241	-0.00023773	492.8020965628906	21.937	0.19631	21.937	21.837	22.033	0					7	4	2	0	0	0	0.50461	1	6457	6457		31.955	2.8053	1	289580			45418	3465	30016	30138	46004	46004					0.09516271291306566
VAVERARAL	9	Unmodified	_VAVERARAL_					0	0	0		nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	nc|ENSG00000126217|O15068-5|MCF2L	nc|ENSG00000126217|O15068-5|MCF2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.8009338378906	2	492.801083	983.587613	2.7471	0.0013538	-3.497	-0.0017233	-0.74989	-0.00036955	492.79930872990684	22.063	0.36719	22.063	21.953	22.321	0					11	7	3	0	0	0	0.18605	1	7292	7292		63.306	11.971	1	2364400			45419	3465	30016	30138	46005	46005					0.09516271291306566
VAVGGIVVLNG	11	Unmodified	_VAVGGIVVLNG_					0	0	0			REV__EPHA2|p.A536V|1|0.32|ENSG00000142627|chr1:16134543-16134543|G/A|missense_variant	REV__EPHA2|p.A536V|1|0.32|ENSG00000142627|chr1:16134543-16134543|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.30548095703125	2	499.305667	996.596781	0.16514	8.2458E-05	-0.6632	-0.00033114	-0.49806	-0.00024868	499.30532093825997	30.509	0.46941	30.509	30.335	30.805	0					33	12	4	0	0	0	0.40021	1	10372	10372		51.335	0	1	517630	+		45420	20640	30017	30139	46006	46006					0.09834619856997051
VAVGLLGIA	9	Unmodified	_VAVGLLGIA_					0	0	0		ENST00000493290.5_1_7:95063638-95064308:-|nuORF;ENST00000469926.5_1_7:95045599-95064308:-|nuORF;PON2|p.F65Lfs*5|1|0.33|ENSG00000105854|chr7:95416248-95416248|A/-|frameshift_variant;ENST00000469716.1_1_7:95053779-95064326:-|nuORF;ENST00000471883.1_1_7:95047556-95064326:-|nuORF;PON2|p.S311Rfs*5|1|0.35|ENSG00000105854|chr7:95405462-95405465|AGAT/-|frameshift_variant;nc|ENSG00000105854|Q15165-3|PON2;ENSG00000105854|ENST00000222572|PON2	ENST00000493290.5_1_7:95063638-95064308:-|nuORF	ENST00000493290.5_1_7:95063638-95064308:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.7655944824219	2	406.765646	811.516739	1.1413	0.00046424	-1.3583	-0.00055251	-0.21701	-8.8271E-05	406.7651295709631	38.875	0.23235	38.875	38.791	39.024	0					14	8	2	0	0	0	0.31222	1	15258	15258		49.211	10.189	1	135450			45421	2403	30018	30140	46007	46007					0.10344178253797054
VAVGVARAR	9	Unmodified	_VAVGVARAR_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.78253173828125	2	449.782693	897.550834	-0.47186	-0.00021223	0.080576	3.6242E-05	-0.39128	-0.00017599	449.7828183799479	18.72	0.13309	18.72	18.629	18.762	0					5	3	2	0	0	0	0.1236	1	5537	5537		73.975	8.1716	1	203000			45422	5509	30019	30141	46008	46008					0.09796019465409245
VAVHLPTL	8	Unmodified	_VAVHLPTL_					0	0	0			REV__nc|ENSG00000029534|P16157-2|ANK1	REV__nc|ENSG00000029534|P16157-2|ANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.2630310058594	2	425.263271	848.511988	-0.21969	-9.3427E-05	-0.57261	-0.00024351	-0.7923	-0.00033694	425.26285609594964	27.638	0.41124	27.638	27.523	27.934	0					17	13	2	0	0	0	0.74117	1	8548	8548		28.254	0	1	74579	+		45423	12963	30020	30142	46009	46009					0.08167294111046886
VAVHLPTL	8	Unmodified	_VAVHLPTL_					0	0	0			REV__nc|ENSG00000029534|P16157-2|ANK1	REV__nc|ENSG00000029534|P16157-2|ANK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.26312255859375	2	425.263271	848.511988	-0.75456	-0.00032089	0.34774	0.00014788	-0.40683	-0.00017301	425.2634383889608	27.961	0.98932	27.961	27.653	28.643	0					39	24	2	0	0	0	0.67475	1	9840	9840		37.028	0	1	294000	+		45424	12963	30020	30142	46010	46010					0.08167294111046886
VAVLCVPSP	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))VAVLC(Carbamidomethyl (C))VPSP_	VAVLC(1)VPSP		VAVLC(52)VPSP		1	1	0		ENST00000531776.1_1_11:16810636-16810909:-|nuORF	ENST00000531776.1_1_11:16810636-16810909:-|nuORF	ENST00000531776.1_1_11:16810636-16810909:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.26678466796875	2	492.265153	982.515753	2.7283	0.0013431	0.81796	0.00040265	3.5463	0.0017457	492.26573643103575	21.214	0.71378	21.214	21.11	21.823	0					41	14	3	0	0	0	0.27781	1	6855	6855		52.299	52.299	1	52324000			45425	10443	30021	30143	46011	46011	423				0.023795958225832692
VAVLLGGLA	9	Unmodified	_VAVLLGGLA_					0	0	0		ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.7655334472656	2	406.765646	811.516739	-0.12369	-5.0311E-05	-0.01298	-5.2798E-06	-0.13666	-5.5591E-05	406.765559254489	38.598	0.17755	38.598	38.489	38.666	0					17	10	2	0	0	0	0.31222	1	12569	12569		49.211	0	1	111660			45426	2208	30022	30144	46012	46012					0.10344178253797054
VAVLLGGLA	9	Unmodified	_VAVLLGGLA_					0	0	0		ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.765869140625	2	406.765646	811.516739	-0.88268	-0.00035905	0.67353	0.00027397	-0.20915	-8.5077E-05	406.76595313841153	38.656	0.11416	38.656	38.593	38.707	0					10	6	2	0	0	0	0.52436	1	13023	13023		29.842	0	1	71775			45427	2208	30022	30144	46013	46013					0.10344178253797054
VAVLLGGLA	9	Unmodified	_VAVLLGGLA_					0	0	0		ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.765380859375	2	406.765646	811.516739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.572	1	38.572	38.072	39.072	0								0	0	0	0.36353	1	13797	13797		21.702	0	1				45428	2208	30022	30144	46014	46014					0.10344178253797054
VAVLMLLGL	9	Unmodified	_VAVLMLLGL_					0	0	0			REV__ENSG00000127366|ENST00000247883|TAS2R5	REV__ENSG00000127366|ENST00000247883|TAS2R5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	464.79986572265625	2	464.798632	927.582711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.449	1	20.449	19.949	20.949	0								0	0	0	0.3269	1	5475	5475		29.842	0	1		+		45429	14486	30023	30145	46015	46015					0.1160225110435249
VAVLRMCR	8	Carbamidomethyl (C)	_VAVLRMC(Carbamidomethyl (C))R_	VAVLRMC(1)R		VAVLRMC(56)R		0	1	0			REV__nc|ENSG00000100731|Q96RV3-2|PCNX1	REV__nc|ENSG00000100731|Q96RV3-2|PCNX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7737121582031	2	502.778239	1003.54193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.173	1	32.173	31.673	32.673	0								0	0	0	1.7419	1	11160	11160		55.504	7.5886	1		+		45430	20236	30024	30146	46016	46016	713				0.0402958651308154
VAVNVARVII	10	Unmodified	_VAVNVARVII_					0	0	0		DOCK9|p.T891A|1|0.35|ENSG00000088387|chr13:98881896-98881896|T/C|missense_variant	DOCK9|p.T891A|1|0.35|ENSG00000088387|chr13:98881896-98881896|T/C|missense_variant	DOCK9|p.T891A|1|0.35|ENSG00000088387|chr13:98881896-98881896|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.89898681640625	3	351.897481	1052.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.308	1	38.308	37.808	38.808	0								0	0	0	0.40063	1	14550	14550		30.318	2.4355	1				45431	839	30025	30147	46017	46017					0.1463858801932929
VAVPAGGWL	9	Unmodified	_VAVPAGGWL_					0	0	0		ENST00000543067.5_1_X:21392776-21393022:+|nuORF	ENST00000543067.5_1_X:21392776-21393022:+|nuORF	ENST00000543067.5_1_X:21392776-21393022:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2451477050781	2	435.247621	868.480688	-3.0058	-0.0013083	-2.6016	-0.0011324	-5.6074	-0.0024406	435.2467281701545	22.835	0.18678	22.835	22.682	22.869	0					7	4	2	0	0	0	0.52436	1	6851	6851		29.842	0	1	72886			45432	10556	30026	30148	46018	46018					0.04118721076940801
VAVPYPPTV	9	Unmodified	_VAVPYPPTV_					0	0	0		MED13L|p.A850V|1|0.17|ENSG00000123066|chr12:116003023-116003023|G/A|missense_variant	MED13L|p.A850V|1|0.17|ENSG00000123066|chr12:116003023-116003023|G/A|missense_variant	MED13L|p.A850V|1|0.17|ENSG00000123066|chr12:116003023-116003023|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7691650390625	2	471.768386	941.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.09	1	42.09	41.59	42.59	0								0	0	0	0.27166	1	16777	16777		40.573	0	1				45433	11355	30027	30149	46019	46019					0.04911857045613033
VAVQAHPDL	9	Unmodified	_VAVQAHPDL_					0	0	0			REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.25823974609375	2	475.258717	948.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.283	1	23.283	22.783	23.783	0								0	0	0	0.14517	1	6714	6714		60.972	0	1		+		45434	12109	30028	30150	46020	46020					0.026569007546981993
VAVQVRAL	8	Unmodified	_VAVQVRAL_					0	0	0		ENST00000561142.5_1_14:24605441-24607359:+|nuORF	ENST00000561142.5_1_14:24605441-24607359:+|nuORF	ENST00000561142.5_1_14:24605441-24607359:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.274169921875	2	428.27417	854.533787	0.84448	0.00036167	-1.267	-0.00054264	-0.42255	-0.00018097	428.273655331076	31.616	0.17534	31.616	31.531	31.707	0					8	4	2	0	0	0	0.34985	1	11542	11542		76.847	8.3619	1	276270			45435	10705	30029	30151	46021	46021					0.1007009885960315
VAVQVRAL	8	Unmodified	_VAVQVRAL_					0	0	0		ENST00000561142.5_1_14:24605441-24607359:+|nuORF	ENST00000561142.5_1_14:24605441-24607359:+|nuORF	ENST00000561142.5_1_14:24605441-24607359:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.27410888671875	2	428.27417	854.533787	-0.53254	-0.00022807	0.3599	0.00015414	-0.17263	-7.3935E-05	428.2742733484912	31.58	0.19926	31.58	31.485	31.685	0					6	4	2	0	0	0	0.29779	1	11911	11911		83.287	11.909	1	148870			45436	10705	30029	30151	46022	46022					0.1007009885960315
VAVQVRAL	8	Unmodified	_VAVQVRAL_					0	0	0		ENST00000561142.5_1_14:24605441-24607359:+|nuORF	ENST00000561142.5_1_14:24605441-24607359:+|nuORF	ENST00000561142.5_1_14:24605441-24607359:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.2738952636719	2	428.27417	854.533787	-0.41992	-0.00017984	-0.15709	-6.7276E-05	-0.57701	-0.00024712	428.2740556097352	31.578	0.16229	31.578	31.471	31.633	0					8	3	3	0	0	0	0.41952	1	11833	11833		68.485	10.673	1	308250			45437	10705	30029	30151	46023	46023					0.1007009885960315
VAVRPAEL	8	Unmodified	_VAVRPAEL_					0	0	0			REV__RHPN1|p.V681Sfs*93|1|0.37|ENSG00000158106|chr8:143382598-143382599|-/C|frameshift_variant	REV__RHPN1|p.V681Sfs*93|1|0.37|ENSG00000158106|chr8:143382598-143382599|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.7580871582031	2	427.758352	853.502152	0.93275	0.00039899	-1.6391	-0.00070114	-0.70635	-0.00030215	427.75769042668816	22.316	0.31319	22.316	22.204	22.518	0					16	6	4	0	0	0	0.54629	1	7548	7548		55.504	0	1	639300	+		45438	21464	30030	30152	46024	46024					0.06954106105649771
VAVSATIPN	9	Unmodified	_VAVSATIPN_					0	0	0		HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant;HFM1|p.N1388Tfs*37|1|0.26|ENSG00000162669|chr1:91262316-91262316|T/-|frameshift_variant;ENSG00000162669|ENST00000370425|HFM1;HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant;HFM1|p.K1137Nfs*44|1|0.18|ENSG00000162669|chr1:91277043-91277043|T/-|frameshift_variant	HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant	HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.248046875	2	436.247818	870.481082	-0.5445	-0.00023753	1.0484	0.00045738	0.50395	0.00021985	436.2483025690756	20.9	0.66335	20.9	20.494	21.158	0					23	13	3	0	0	0	0.35045	1	6726	6726		45.952	5.1738	1	625820			45439	5486	30031	30153	46025	46025					0.040660960061472906
VAVSVKPG	8	Unmodified	_VAVSVKPG_					0	0	0		nc|ENSG00000175198|P05165-2|PCCA;ENSG00000175198|ENST00000376285|PCCA	nc|ENSG00000175198|P05165-2|PCCA	nc|ENSG00000175198|P05165-2|PCCA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.7342529296875	2	378.734346	755.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.094	1	19.094	18.594	19.594	0								0	0	0	1.7419	1	4875	4875		31.955	1.4512	1				45440	6537	30032	30154	46026	46026					0.06663032185622342
VAVTPVQAVI	10	Unmodified	_VAVTPVQAVI_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2;ENST00000483432.1_1_9:140070142-140074912:-|nuORF;ENST00000493730.1_1_9:140069903-140070286:-|nuORF	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.80804443359375	2	498.808042	995.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.216	1	40.216	39.716	40.716	0								0	0	0	0.33107	1	15845	15845		45.972	5.1941	1				45441	6599	30033	30155	46027	46027					0.10355503999744542
VAVTRAKAL	9	Unmodified	_VAVTRAKAL_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113242306-113242605:+|nuORF;ENST00000494319.1_1_1:113242363-113243003:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.8000793457031	2	464.800552	927.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.727	1	20.727	20.227	21.227	0								0	0	0	0.11736	1	6761	6761		67.494	7.09	1				45442	5123	30034	30156	46028	46028					0.11986056922410171
VAVTRPVT	8	Unmodified	_VAVTRPVT_					0	0	0		nc|ENSG00000006118|Q24JP5-3|TMEM132A;TMEM132A|p.V473Cfs*16|1|0.43|ENSG00000006118|chr11:60933597-60933597|G/-|frameshift_variant;TMEM132A|p.L494Cfs*82|1|0.14|ENSG00000006118|chr11:60933660-60933660|C/-|frameshift_variant;nc|ENSG00000006118|Q24JP5-4|TMEM132A;TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A	nc|ENSG00000006118|Q24JP5-3|TMEM132A	nc|ENSG00000006118|Q24JP5-3|TMEM132A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.7582092285156	2	421.758352	841.502152	-0.20105	-8.4797E-05	-0.0035838	-1.5115E-06	-0.20464	-8.6308E-05	421.7583762750905	27.819	0.19221	27.819	27.742	27.934	0					9	6	2	0	0	0	0.63077	1	8624	8624		44.117	1.7207	1	120110			45443	975	30035	30157	46029	46029					0.07506106105654453
VAVVECNVDH	10	Unmodified	_VAVVECNVDH_					0	0	0			REV__nc|ENSG00000165672|P30048-2|PRDX3	REV__nc|ENSG00000165672|P30048-2|PRDX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.1743469238281	3	362.174574	1083.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.86	1	18.86	18.36	19.36	0								0	0	0	0.41137	1	4769	4769		27.047	0.29761	1		+		45444	16060	30036	30158	46030	46030					-0.03651681676501539
VAWCAALP	8	Carbamidomethyl (C)	_VAWC(Carbamidomethyl (C))AALP_	VAWC(1)AALP		VAWC(55)AALP		0	1	0			REV__ENST00000397887.7_1_21:46270576-46270747:-|nuORF	REV__ENST00000397887.7_1_21:46270576-46270747:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2265930175781	2	444.225831	886.437109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.479	1	16.479	15.979	16.979	0								0	0	0	1.7419	1	3916	3916		54.895	8.9223	1		+		45445	18917	30037	30159	46031	46031	678				-0.01065211691843615
VAWGPFGF	8	Unmodified	_VAWGPFGF_					0	0	0			REV__PANK3|p.L263F|1|0.52|ENSG00000120137|chr5:168563912-168563912|C/A|missense_variant	REV__PANK3|p.L263F|1|0.52|ENSG00000120137|chr5:168563912-168563912|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.7207336425781	2	440.721239	879.427924	0.36401	0.00016043	-1.2536	-0.00055247	-0.88956	-0.00039205	440.7208842348853	28.262	0.38939	28.262	28.043	28.432	0					20	9	3	0	0	0	0.70073	1	9304	9304		33.493	8.0428	1	198840	+		45446	21336	30038	30160	46032	46032					-0.016612369858535203
VAYFTRVFQ	9	Unmodified	_VAYFTRVFQ_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;ENST00000608291.1_1_19:32968395-32973143:+|nuORF	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.53790283203125	3	377.537953	1129.59203	0.69287	0.00026158	-0.66682	-0.00025175	0.026051	9.8351E-06	377.5377093070561	37.746	0.39258	37.746	37.596	37.988	0					18	8	3	0	0	0	0.41113	1	14772	14772		40.778	1.5253	1	494070			45447	6734	30039	30161	46033	46033					0.032417357142321634
VAYMLHSK	8	Unmodified	_VAYMLHSK_					0	0	0			REV__ENSG00000196428|ENST00000688009|TSC22D2;REV__ENSG00000102804|ENST00000458659|TSC22D1	REV__ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.75311279296875	2	474.752213	947.489873	0.70843	0.00033633	-4.189	-0.0019887	-3.4805	-0.0016524	474.750368999692	17.71	0.46092	17.71	17.615	18.076	0					14	9	2	0	0	0	0.39542	1	5156	5156		71.378	0	1	532020	+		45448	17253;13647	30040	30162	46034	46034					0.0140274637095672
VAYQQILSQ	9	Unmodified	_VAYQQILSQ_					0	0	0		ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	ENST00000452692.5_1_2:121728002-121748192:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.5268859863281	3	350.525713	1048.55531	3.036	0.0010642	-0.18466	-6.4727E-05	2.8513	0.00099947	350.5256971193197	26.578	0.21918	26.578	26.469	26.688	0					7	4	2	0	0	0	0.40353	1	9418	9418		41.427	8.6761	1	704540			45449	1520	30041	30163	46035	46035					0.03297439097673305
VAYRIYKQ	8	Unmodified	_VAYRIYKQ_					0	0	0			REV__ENSG00000167264|ENST00000565263|DUS2	REV__ENSG00000167264|ENST00000565263|DUS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.799072265625	2	520.798009	1039.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.673	1	11.673	11.173	12.173	0								0	0	0	1.7419	1	2230	2230		4.3163	0	1		+		45450	16178	30042	30164	46036	46036					0.06325753059786621
VCAADPYKIV	10	Unmodified	_VCAADPYKIV_					0	0	0			REV__ABCC10|p.L502P|1|0.23|ENSG00000124574|chr6:43434745-43434745|T/C|missense_variant	REV__ABCC10|p.L502P|1|0.23|ENSG00000124574|chr6:43434745-43434745|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7822875976562	2	539.78371	1077.55287	0.25869	0.00013963	-3.869	-0.0020884	-3.6103	-0.0019488	539.7817870275743	32.057	0.13246	32.057	31.966	32.099	0					5	3	2	0	0	0	0.44469	1	11740	11740		51.335	4.8787	1	164540	+		45451	12037	30043	30165	46037	46037					0.01719267368321198
VCAAYKKPD	9	Unmodified	_VCAAYKKPD_					0	0	0			REV__sp|P09712|US03_HCMVAMembraneglycoproteinUS3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US3PE=2SV=1	REV__sp|P09712|US03_HCMVAMembraneglycoproteinUS3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US3PE=2SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.7564697265625	2	497.754953	993.495352	3.3913	0.0016881	0.092194	4.589E-05	3.4835	0.0017339	497.7549197530179	17.608	0.1091	17.608	17.536	17.645	0					6	3	2	0	0	0	0.41113	1	4441	4441		40.778	1.972	1	192970	+		45452	21568	30044	30166	46038	46038					-0.0016557483722863253
VCADSRANI	9	Unmodified	_VCADSRANI_					0	0	0		CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant;ENSG00000160161|ENST00000291495|CILP2	CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant	CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7309265136719	2	474.732009	947.449465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.509	1	23.509	23.009	24.009	0								0	0	0	0.24724	1	7187	7187		44.117	1.2525	1				45453	543	30045	30167	46039	46039					-0.02636220019473967
VCAPRRLI	8	Unmodified	_VCAPRRLI_					0	0	0			REV__ENSG00000212657|ENST00000391352|KRTAP16-1	REV__ENSG00000212657|ENST00000391352|KRTAP16-1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.28399658203125	2	464.281472	926.548391	2.6004	0.0012073	1.6492	0.00076571	4.2496	0.001973	464.2818789956306	39.552	0.37063	39.552	39.364	39.734	0					13	8	3	0	0	0	0.49887	1	15653	15653		60.294	4.7898	1	189930	+		45454	17550	30046	30168	46040	46040					0.08217847736113981
VCARLETVAEL	11	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))ARLETVAEL_	VC(1)ARLETVAEL		VC(43)ARLETVAEL		0	1	0			REV__ENST00000246229.4_1_20:30790010-30790079:-|nuORF	REV__ENST00000246229.4_1_20:30790010-30790079:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	630.832275390625	2	630.834462	1259.65437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.771	1	25.771	25.271	26.271	0								0	0	0	0.36657	1	8059	8059		42.864	8.9426	1		+		45455	17944	30047	30169	46041	46041	630				0.03493094000259589
VCCPGSRHSL	10	Unmodified	_VCCPGSRHSL_					0	0	0		ENST00000591732.1_1_17:76996320-77004185:-|nuORF	ENST00000591732.1_1_17:76996320-77004185:-|nuORF	ENST00000591732.1_1_17:76996320-77004185:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7477416992188	2	529.747136	1057.47972	0.45958	0.00024346	0.62009	0.00032849	1.0797	0.00057195	529.7475900613339	28.004	0.20523	28.004	27.948	28.154	0					17	7	3	0	0	0	0.19797	1	8694	8694		79.713	10.926	1	291080			45456	10967	30048	30170	46042	46042					-0.04672184625928821
VCEEEVASVLV	11	Unmodified	_VCEEEVASVLV_					0	0	0		ENST00000538442.5_2_6:31462711-31462768:+|nuORF	ENST00000538442.5_2_6:31462711-31462768:+|nuORF	ENST00000538442.5_2_6:31462711-31462768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	588.7943115234375	2	588.794472	1175.57439	1.3552	0.00079793	-1.7398	-0.0010244	-0.3846	-0.00022645	588.7937520410478	41.441	0.24944	41.441	41.357	41.606	0					13	6	3	0	0	0	0.45317	1	16480	16480		47.657	10.498	1	196320			45457	10510	30049	30171	46043	46043					-0.006373923936052961
VCEIWTNQ	8	Unmodified	_VCEIWTNQ_					0	0	0		ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8-8|ANKS1B;nc|ENSG00000185046|Q7Z6G8-5|ANKS1B;nc|ENSG00000185046|Q7Z6G8-3|ANKS1B	ENSG00000185046|ENST00000683438|ANKS1B	ENSG00000185046|ENST00000683438|ANKS1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.72662353515625	2	496.728935	991.443317	0.1449	7.1974E-05	-3.3109	-0.0016446	-3.166	-0.0015726	496.7268638111515	30.434	0.20736	30.434	30.386	30.594	0					6	5	2	0	0	0	0.7126	1	10377	10377		31.955	5.2619	1	30205			45458	7059	30050	30172	46044	46044					-0.052747382509892304
VCETDGCSSEA	11	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))ETDGCSSEA_	VC(1)ETDGCSSEA		VC(40)ETDGC(-40)SSEA		0	1	0		ENSG00000164024|ENST00000296411|METAP1;METAP1|p.A55Hfs*9|1|0.04|ENSG00000164024|chr4:99028914-99028915|-/CATTTTAAGGAATATT|frameshift_variant;ENST00000510209.5_1_4:99916904-99957225:+|nuORF	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.2098999023438	2	579.207903	1156.40125	1.7334	0.001004	1.4936	0.00086513	3.227	0.0018691	579.2088453113296	29.74	0.31431	29.74	29.633	29.947	0					15	6	3	0	0	0	0.5473	1	10941	10941		40.778	11.629	2	1032600			45459	5640	30051	30173	46045	46045	234				-0.170691265123196
VCETSGLALY	10	Unmodified	_VCETSGLALY_					0	0	0			REV__OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant	REV__OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.2576293945312	2	528.257525	1054.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.592	1	14.592	14.092	15.092	0								0	0	0	0.40862	1	3589	3589		27.882	1.1893	1		+		45460	16562	30052	30174	46046	46046					-0.024573157652639566
VCEYIVKK	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))EYIVKK_	VC(1)EYIVKK		VC(120)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7864990234375	2	519.786253	1037.55795	2.0672	0.0010745	-2.015	-0.0010474	0.052218	2.7142E-05	519.7855074630977	24.333	0.11045	24.333	24.277	24.388	0					6	2	3	0	0	0	0.23898	1	8188	8188		116.9	9.8961	1	294610			45461	3666	30053	30175	46047	46047	156				0.040675712309621304
VCFGEYRDN	9	Unmodified	_VCFGEYRDN_					0	0	0			REV__GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	REV__GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.735595703125	2	551.734748	1101.45494	0.12298	6.7852E-05	1.8033	0.00099495	1.9263	0.0010628	551.7356189031672	21.248	0.11547	21.248	21.192	21.307	0					4	2	2	0	0	0	0.51817	1	7030	7030		30.504	2.6214	1	184250	+		45462	15417	30054	30176	46048	46048					-0.09172541227644615
VCFLAKCPY	9	Unmodified	_VCFLAKCPY_					0	0	0		FAM20A|p.F316L|1|0.16|ENSG00000108950|chr17:68542146-68542146|G/T|missense_variant	FAM20A|p.F316L|1|0.16|ENSG00000108950|chr17:68542146-68542146|G/T|missense_variant	FAM20A|p.F316L|1|0.16|ENSG00000108950|chr17:68542146-68542146|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2562255859375	2	522.256274	1042.49799	-1.3082	-0.00068321	1.3054	0.00068175	-0.0027921	-1.4582E-06	522.2570206134254	35.641	0.26971	35.641	35.538	35.808	0					21	10	3	0	0	0	0.41354	1	12713	12713		40.573	3.4135	1	320570			45463	11128	30055	30177	46049	46049					-0.021554427039291113
VCFMSNTI	8	Unmodified	_VCFMSNTI_					0	0	0			REV__nc|ENSG00000010438|P35030-5|PRSS3	REV__nc|ENSG00000010438|P35030-5|PRSS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7084045410156	2	457.709156	913.40376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.502	1	40.502	40.002	41.002	0								0	0	0	1.7419	1	15440	15440		35.618	0	1		+		45464	12899	30056	30178	46050	46050					-0.056405815260518466
VCFPKRAFR	9	Unmodified	_VCFPKRAFR_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.3123168945312	2	562.313303	1122.61205	-0.96037	-0.00054003	0.27481	0.00015453	-0.68556	-0.0003855	562.3136191087148	32.235	0.22306	32.235	32.131	32.354	0					10	6	2	0	0	0	0.5654	1	11161	11161		25.45	0.93098	1	141360	+		45465	17046	30057	30179	46051	46051					0.05565208173175051
VCFPQIKLEY	10	Unmodified	_VCFPQIKLEY_					0	0	0		ENST00000358120.2_1_1:248261979-248262807:+|nuORF	ENST00000358120.2_1_1:248261979-248262807:+|nuORF	ENST00000358120.2_1_1:248261979-248262807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	620.3272705078125	2	620.325742	1238.63693	0.18138	0.00011252	1.6932	0.0010503	1.8746	0.0011629	620.3266793290695	27.313	0.16768	27.313	27.237	27.405	0					6	3	2	0	0	0	0.61187	1	9886	9886		32.812	3.6424	1	109980			45466	8828	30058	30180	46052	46052					0.027157984652831146
VCGGKLEKFP	10	Unmodified	_VCGGKLEKFP_					0	0	0			REV__ENST00000455502.5_1_7:93540047-93540227:+|nuORF	REV__ENST00000455502.5_1_7:93540047-93540227:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	359.86126708984375	3	359.86356	1076.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.452	1	20.452	19.952	20.952	0								0	0	0	0.40063	1	5753	5753		30.318	1.1477	1		+		45467	14501	30059	30181	46053	46053					0.033629736052489534
VCGLLLRWV	9	Unmodified	_VCGLLLRWV_					0	0	0			REV__TRIM4|p.N373Tfs*57|1|0.3|ENSG00000146833|chr7:99892548-99892548|T/-|frameshift_variant	REV__TRIM4|p.N373Tfs*57|1|0.3|ENSG00000146833|chr7:99892548-99892548|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.8154907226562	2	529.812605	1057.61066	0.02173	1.1513E-05	3.4499	0.0018278	3.4717	0.0018393	529.814674262511	34.423	0.075714	34.423	34.379	34.455	0					5	3	2	0	0	0	0.47428	1	11618	11618		35.201	1.6851	1	33773	+		45468	22233	30060	30182	46054	46054					0.08415574084438049
VCGPGACCHRL	11	Unmodified	_VCGPGACCHRL_					0	0	0		ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENST00000443294.5_1_1:202822362-202830656:-|nuORF	ENST00000443294.5_1_1:202822362-202830656:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2473754882812	2	558.248988	1114.48342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.017	1	43.017	42.517	43.517	0								0	0	0	0.44116	1	16856	16856		27.882	1.1893	1				45469	9595	30061	30183	46055	46055					-0.06923838123702808
VCGQERTSATL	11	Unmodified	_VCGQERTSATL_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;ENST00000494839.1_1_1:228481917-228482770:+|nuORF	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.7894287109375	2	582.787512	1163.56047	3.2289	0.0018818	0.46977	0.00027378	3.6987	0.0021556	582.7878121513199	44.653	1.8263	44.653	43.011	44.837	0					116	67	3	0	0	0	0.62108	1	17896	17896		35.152	3.6222	1	339610			45470	11590	30062	30184	46056	46056					-0.014766251020091659
VCGRCLAL	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))GRCLAL_	VC(0.987)GRC(0.013)LAL		VC(19)GRC(-19)LAL		0	1	0			REV__PTGFRN|p.R22C|1|0.38|ENSG00000134247|chr1:116941729-116941729|C/T|missense_variant	REV__PTGFRN|p.R22C|1|0.38|ENSG00000134247|chr1:116941729-116941729|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	446.2318420410156	2	446.23059	890.446628	2.5734	0.0011483	0.67323	0.00030042	3.2466	0.0014487	446.2309125596091	40.334	0.93872	40.334	39.943	40.881	0					46	19	3	0	0	0	0.57802	1	16062	16062		52.299	52.299	2	908180	+		45471	21423	30063	30185	46057	46057	738				-0.0029776667798842027
VCGRPGAAL	9	Unmodified	_VCGRPGAAL_					0	0	0		ENST00000379299.6_1_20:5093602-5093659:-|nuORF;ENST00000202834.11_1_20:5090072-5093674:-|nuORF;ENSG00000089063|ENST00000342308|TMEM230	ENST00000379299.6_1_20:5093602-5093659:-|nuORF	ENST00000379299.6_1_20:5093602-5093659:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2290954589844	2	422.228905	842.443257	-1.2024	-0.00050769	0.94769	0.00040014	-0.25471	-0.00010754	422.22929846063977	24.377	0.24945	24.377	24.313	24.562	0					13	8	2	0	0	0	0.26904	1	7461	7461		53.351	3.3269	1	107000			45472	1798	30064	30186	46058	46058					0.015733065396602797
VCGRPGAAL	9	Unmodified	_VCGRPGAAL_					0	0	0		ENST00000379299.6_1_20:5093602-5093659:-|nuORF;ENST00000202834.11_1_20:5090072-5093674:-|nuORF;ENSG00000089063|ENST00000342308|TMEM230	ENST00000379299.6_1_20:5093602-5093659:-|nuORF	ENST00000379299.6_1_20:5093602-5093659:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.2286376953125	2	422.228905	842.443257	0.85683	0.00036178	-0.032473	-1.3711E-05	0.82436	0.00034807	422.2292730738656	24.812	0.6124	24.812	24.494	25.106	0					21	12	3	0	0	0	0.25109	1	8643	8643		55.504	5.4797	1	594700			45473	1798	30064	30186	46059	46059					0.015733065396602797
VCIFDRSK	8	Unmodified	_VCIFDRSK_					0	0	0			REV__ENSG00000167139|ENST00000300504|TBC1D21	REV__ENSG00000167139|ENST00000300504|TBC1D21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2589416503906	2	484.25512	966.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.587	1	27.587	27.087	28.087	0								0	0	0	1.7419	1	8806	8806		31.955	1.4512	1		+		45474	16171	30065	30187	46060	46060					0.01109844882626021
VCIISNNMLM	10	Unmodified	_VCIISNNMLM_					0	0	0		ENST00000379638.8_1_5:112213371-112213464:-|nuORF	ENST00000379638.8_1_5:112213371-112213464:-|nuORF	ENST00000379638.8_1_5:112213371-112213464:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.2754516601562	2	569.27688	1136.53921	-1.322	-0.0007526	-1.6186	-0.00092141	-2.9406	-0.001674	569.2763009101589	26.378	0.23281	26.378	26.276	26.509	0					12	5	3	0	0	0	0.2538	1	8471	8471		42.396	0	1	578020			45475	9086	30066	30188	46061	46061					-0.023600497267580067
VCISIPEVDAY	11	Unmodified	_VCISIPEVDAY_					0	0	0		ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.7986450195312	2	604.797014	1207.57948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.336	1	33.336	32.836	33.836	0								0	0	0	0.45674	1	11182	11182		20.947	1.8434	1				45476	5252	30067	30189	46062	46062					-0.016010885309697187
VCKFRLGLALL	11	Unmodified	_VCKFRLGLALL_					0	0	0			REV__ENST00000395989.7_3_20:50715116-50721421:-|nuORF	REV__ENST00000395989.7_3_20:50715116-50721421:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	411.59051513671875	3	411.589771	1231.74748	2.9269	0.0012047	-1.0962	-0.00045117	1.8307	0.0007535	411.5892831606008	14.634	0.1706	14.634	14.575	14.745	0					7	3	3	0	0	0	0.77123	1	3695	3695		20.837	3.004	1	1929600	+		45477	18890	30068	30190	46063	46063					0.14088063244139448
VCKIHRML	8	Oxidation (M)	_VCKIHRM(Oxidation (M))L_		VCKIHRM(1)L		VCKIHRM(41)L	0	0	1		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.1903991699219	3	339.189502	1014.54668	3.0193	0.0010241	0.066208	2.2457E-05	3.0856	0.0010466	339.189501592278	26.271	0.46841	26.271	26.017	26.486	0					29	9	5	0	0	0	0.65276	1	9230	9230		40.573	40.573	1	1871000			45478	4940	30069	30191	46064	46064		202			0.03998470655858455
VCKSGRCI	8	Carbamidomethyl (C)	_VCKSGRC(Carbamidomethyl (C))I_	VCKSGRC(1)I		VC(-62)KSGRC(62)I		0	1	0		LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.7352600097656	2	461.733497	921.452441	4.1973	0.001938	-0.34512	-0.00015935	3.8522	0.0017787	461.73357652853684	29.693	0.16775	29.693	29.653	29.821	0					10	6	2	0	0	0	0.3961	1	9694	9694		71.296	15.791	2	70030			45479	6112	30070	30192	46065	46065	257				-0.011426681662896954
VCLCTIFLVA	10	2 Carbamidomethyl (C)	_VC(Carbamidomethyl (C))LC(Carbamidomethyl (C))TIFLVA_	VC(1)LC(1)TIFLVA		VC(97)LC(97)TIFLVA		0	2	0		SLC7A7|p.F424V|1|0.33|ENSG00000155465|chr14:22774092-22774092|A/C|missense_variant	SLC7A7|p.F424V|1|0.33|ENSG00000155465|chr14:22774092-22774092|A/C|missense_variant	SLC7A7|p.F424V|1|0.33|ENSG00000155465|chr14:22774092-22774092|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	598.3119506835938	2	598.31432	1194.61409	-1.8475	-0.0011054	-2.2804	-0.0013644	-4.1279	-0.0024698	598.3130323359558	21.711	0.13818	21.711	21.623	21.761	0					8	3	3	0	0	0	0.088291	1	6351	6351		97.473	27.845	1	463530			45480	22420	30071	30193	46066	46066	752;753				0.024564560761291432
VCLCVIPK	8	Carbamidomethyl (C)	_VCLC(Carbamidomethyl (C))VIPK_	VC(0.002)LC(0.998)VIPK		VC(-27)LC(27)VIPK		0	1	0			REV__ENST00000262888.7_1_19:44285036-44285354:-|nuORF	REV__ENST00000262888.7_1_19:44285036-44285354:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2586669921875	2	466.258816	930.50308	0.061223	2.8546E-05	-2.1395	-0.00099756	-2.0783	-0.00096901	466.2580533246403	29.423	0.38063	29.423	29.218	29.598	0					26	13	3	0	0	0	0.55361	1	9263	9263		54.765	11.139	2	383360	+		45481	18036	30072	30194	46067	46067	635				0.035048611587058076
VCLMPGQGGGV	11	Unmodified	_VCLMPGQGGGV_					0	0	0		ENST00000425254.2_1_19:37177700-37178230:-|nuORF	ENST00000425254.2_1_19:37177700-37178230:-|nuORF	ENST00000425254.2_1_19:37177700-37178230:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2460632324219	2	509.246437	1016.47832	-1.8559	-0.00094509	1.2081	0.00061524	-0.64772	-0.00032985	509.24703885931604	26.043	0.49466	26.043	25.67	26.165	0					19	9	3	0	0	0	0.56817	1	8293	8293		39.253	1.4413	1	211840			45482	9430	30074	30195	46068	46068					-0.029258187146638193
VCLSLRLCL	9	Unmodified	_VCLSLRLCL_					0	0	0		ENST00000473978.5_1_3:196014411-196014483:-|nuORF	ENST00000473978.5_1_3:196014411-196014483:-|nuORF	ENST00000473978.5_1_3:196014411-196014483:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2921447753906	2	510.290648	1018.56674	3.0448	0.0015537	-0.25677	-0.00013103	2.788	0.0014227	510.2905001400704	36.421	0.16478	36.421	36.297	36.462	0					6	3	2	0	0	0	0.2873	1	14156	14156		51.335	1.8939	1	456180			45483	9885	30075	30196	46069	46069					0.058202215957749104
VCLSSVARP	9	Unmodified	_VCLSSVARP_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F;nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.2580871582031	2	466.25512	930.495686	4.0471	0.001887	2.2901	0.0010678	6.3372	0.0029548	466.2563843053817	22.368	0.28788	22.368	22.206	22.494	0					12	8	2	0	0	0	0.14603	1	6583	6583		68.787	13.283	1	101250			45484	1242	30076	30197	46070	46070					0.027658448826286985
VCMLRYQK	8	Unmodified	_VCMLRYQK_					0	0	0		APBB1|p.A653V|1|0.25|ENSG00000166313|chr11:6395793-6395793|G/A|missense_variant	APBB1|p.A653V|1|0.25|ENSG00000166313|chr11:6395793-6395793|G/A|missense_variant	APBB1|p.A653V|1|0.25|ENSG00000166313|chr11:6395793-6395793|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.7747192382812	2	520.772622	1039.53069	0.29474	0.00015349	4.3986	0.0022907	4.6933	0.0024442	520.7745932693756	22.667	0.13375	22.667	22.565	22.699	0					10	4	3	0	0	0	0.49887	1	6703	6703		60.294	6.9425	1	112640			45485	181	30077	30198	46071	46071					0.012507644189327038
VCNKISLLP	9	Unmodified	_VCNKISLLP_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ZFYVE16|p.T1329Hfs*11|2|0.35|ENSG00000039319|chr5:80459451-80459451|A/-|frameshift_variant	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7882385253906	2	493.788795	985.563038	-0.62114	-0.00030671	-0.018155	-8.9646E-06	-0.6393	-0.00031568	493.7886355456695	35.39	0.17043	35.39	35.33	35.501	0					6	3	2	0	0	0	0.30951	1	13671	13671		49.442	1.7842	1	214620			45486	1187	30078	30199	46072	46072					0.06967875093585008
VCPLWHPL	8	Unmodified	_VCPLWHPL_					0	0	0		ENST00000329146.8_1_14:105946005-105946200:+|nuORF	ENST00000329146.8_1_14:105946005-105946200:+|nuORF	ENST00000329146.8_1_14:105946005-105946200:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.256591796875	2	482.757298	963.500044	-1.2953	-0.0006253	0.94984	0.00045854	-0.34544	-0.00016676	482.7588320398039	27.812	0.44928	27.812	27.706	28.155	0					34	16	3	0	0	0	0.70073	1	8974	8974		33.493	1.5381	1	185710			45487	8664	30079	30200	46073	46073					0.016833540961897597
VCPRSQAPV	9	Unmodified	_VCPRSQAPV_					0	0	0			REV__ENSG00000243449|ENST00000409248|C4orf48	REV__ENSG00000243449|ENST00000409248|C4orf48	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.75054931640625	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.048	1	36.048	35.548	36.548	0								0	0	0	0.27025	1	12879	12879		40.778	5.5774	1		+		45488	17701	30080	30201	46074	46074					0.011409607398718435
VCRLCLAR	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))RLCLAR_	VC(0.998)RLC(0.002)LAR		VC(26)RLC(-26)LAR		0	1	0			REV__ENST00000373812.7_2_1:29063436-29063616:+|nuORF	REV__ENST00000373812.7_2_1:29063436-29063616:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.771728515625	2	495.770414	989.526275	2.8511	0.0014135	0.16847	8.3524E-05	3.0196	0.001497	495.77055144699887	32.392	0.47033	32.392	32.236	32.706	0					18	9	3	0	0	0	0.54629	1	12195	12195		55.504	55.504	2	1552200	+		45489	18688	30081	30202	46075	46075	665				0.031092999960264933
VCRPEAQL	8	Unmodified	_VCRPEAQL_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.739501953125	2	458.23947	914.464386	-0.97724	-0.00044781	-2.4874	-0.0011398	-3.4646	-0.0015876	458.2379836178345	29.585	0.22344	29.585	29.457	29.68	0					17	8	3	0	0	0	0.58597	1	9632	9632		51.335	3.4199	1	149680	+		45490	16751	30082	30203	46076	46076					0.003732718485366604
VCRRGAPL	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))RRGAPL_	VC(1)RRGAPL		VC(63)RRGAPL		0	1	0		ENST00000266269.9_2_22:31741767-31741980:-|nuORF	ENST00000266269.9_2_22:31741767-31741980:-|nuORF	ENST00000266269.9_2_22:31741767-31741980:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7588195800781	2	464.760904	927.507254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.684	1	22.684	22.184	23.184	0								0	0	0	1.7419	1	6799	6799		62.978	11.643	1				45491	8353	30083	30204	46077	46077	364				0.04060086696631515
VCRSCLVKY	9	Carbamidomethyl (C)	_VCRSC(Carbamidomethyl (C))LVKY_	VC(0.102)RSC(0.898)LVKY		VC(-9.4)RSC(9.4)LVKY		0	1	0		ENST00000430644.5_1_4:728709-759864:+|nuORF;ENST00000440452.5_1_4:728709-759864:+|nuORF	ENST00000430644.5_1_4:728709-759864:+|nuORF	ENST00000430644.5_1_4:728709-759864:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.2905883789062	2	564.288637	1126.56272	3.4707	0.0019585	-0.509	-0.00028723	2.9617	0.0016713	564.2883683631693	39.058	0.4291	39.058	38.903	39.332	0					29	9	4	0	0	0	0.17854	1	15391	15391		64.207	9.4849	2	2512800			45492	9491	30084	30205	46078	46078	392				0.004501321020825344
VCSGTVAGAVI	11	Unmodified	_VCSGTVAGAVI_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7598876953125	2	488.760235	975.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.012	1	27.012	26.512	27.512	0								0	0	0	0.41918	1	8560	8560		32.812	0	1				45493	1075	30085	30206	46079	46079					0.017184078172022055
VCSRASSPI	9	Unmodified	_VCSRASSPI_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.2366027832031	2	460.236927	918.459301	-0.89083	-0.00040999	0.038379	1.7664E-05	-0.85245	-0.00039233	460.2371808932613	24.907	0.26991	24.907	24.734	25.004	0					25	9	4	0	0	0	0.1115	1	7673	7673		76.774	0	1	691660			45494	11785	30086	30207	46080	46080					-0.0031903201407885717
VCSRASSPI	9	Unmodified	_VCSRASSPI_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.2371826171875	2	460.236927	918.459301	-0.1088	-5.0072E-05	-0.65572	-0.00030179	-0.76452	-0.00035186	460.2367556982505	24.977	0.19657	24.977	24.876	25.072	0					11	4	3	0	0	0	0.1236	1	7902	7902		73.975	0	1	579180			45495	11785	30086	30207	46081	46081					-0.0031903201407885717
VCSVEKSK	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))SVEKSK_	VC(1)SVEKSK		VC(62)SVEKSK		0	1	0		CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7441711425781	2	468.744585	935.474617	-1.1285	-0.000529	0.49674	0.00023285	-0.63179	-0.00029615	468.7447988809884	22.074	0.13462	22.074	22.007	22.141	0					7	4	2	0	0	0	0.48092	1	6448	6448		62.107	12.074	1	109400			45496	380	30087	30208	46082	46082	15				0.004298347831309002
VCTFSLHL	8	Unmodified	_VCTFSLHL_					0	0	0		ENST00000480421.5_1_7:142982055-142983919:+|nuORF	ENST00000480421.5_1_7:142982055-142983919:+|nuORF	ENST00000480421.5_1_7:142982055-142983919:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2397766113281	2	460.238938	918.463324	2.5365	0.0011674	-0.26412	-0.00012156	2.2724	0.0010459	460.23882629869325	13.646	0.63898	13.646	13.498	14.137	0					25	13	3	0	0	0	0.6282	1	3207	3207		44.531	0	1	140660			45497	9950	30088	30209	46083	46083					0.000830574796395922
VCVGERLART	10	Unmodified	_VCVGERLART_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.3037719726562	2	552.303133	1102.59171	1.4629	0.00080796	0.1145	6.324E-05	1.5774	0.0008712	552.303429389862	37.588	0.1611	37.588	37.531	37.693	0					12	9	2	0	0	0	0.64162	1	12304	12304		29.17	0.020503	1	110250			45498	1508	30089	30210	46084	46084					0.044519927227156586
VCVLNSDRKA	10	Unmodified	_VCVLNSDRKA_					0	0	0		SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant;SLFN5|p.P698Lfs*21|1|0.46|ENSG00000166750|chr17:35265300-35265300|C/-|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	SLFN5|p.Q524Sfs*11|1|0.73|ENSG00000166750|chr17:35264609-35264609|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.86456298828125	3	368.865852	1103.57573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.569	1	14.569	14.069	15.069	0								0	0	0	0.38475	1	3178	3178		35.152	7.0705	1				45499	5924	30090	30211	46085	46085					0.028082864858333778
VCVVRLGL	8	Unmodified	_VCVVRLGL_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.7649230957031	2	429.765123	857.515694	-0.56693	-0.00024365	0.018225	7.8325E-06	-0.54871	-0.00023582	429.76524076847636	28.692	0.25469	28.692	28.591	28.846	0					15	6	3	0	0	0	0.72892	1	10152	10152		29.842	0	1	967590	+		45500	15289	30091	30212	46086	46086					0.08123640613257521
VCWLRPPA	8	Unmodified	_VCWLRPPA_					0	0	0			REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3	REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.255859375	2	471.254923	940.495293	3.8152	0.0017979	-1.265	-0.00059616	2.5502	0.0012018	471.25426965370895	26.662	0.45375	26.662	26.469	26.922	0					30	16	2	0	0	0	0.72892	1	8440	8440		29.842	29.842	1	132110	+		45501	14276	30092	30213	46087	46087					0.022664699534288957
VDAAELHGAI	10	Unmodified	_VDAAELHGAI_					0	0	0			REV__nc|ENSG00000116783|Q59H18-3|TNNI3K	REV__nc|ENSG00000116783|Q59H18-3|TNNI3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.26116943359375	2	498.261456	994.50836	-0.25714	-0.00012812	0.063101	3.1441E-05	-0.19404	-9.6681E-05	498.2614361936457	33.495	0.55682	33.495	33.141	33.698	0					30	14	4	0	0	0	0.40673	1	12361	12361		55.504	6.0627	1	1063800	+		45502	20987	30093	30214	46088	46088					0.01088579546535584
VDAAYFINT	9	Unmodified	_VDAAYFINT_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2528381347656	2	507.250557	1012.48656	3.8075	0.0019313	-0.13953	-7.0774E-05	3.6679	0.0018606	507.25055509093613	31.285	0.31409	31.285	31.201	31.515	0					27	12	3	0	0	0	0.22377	1	10340	10340		58.782	14.665	1	647450			45503	5308	30094	30215	46089	46089					-0.019182252020527812
VDAESILVFY	10	Unmodified	_VDAESILVFY_					0	0	0			REV__ENST00000606385.1_1_6:25015606-25015681:-|nuORF	REV__ENST00000606385.1_1_6:25015606-25015681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.86944580078125	3	385.869257	1154.58594	0.85098	0.00032837	-0.34511	-0.00013317	0.50587	0.0001952	385.86928920494114	29.009	0.16904	29.009	28.888	29.057	0					9	4	3	0	0	0	0.64162	1	10327	10327		29.17	0	1	156730	+		45504	20617	30095	30216	46090	46090					0.01483172692064727
VDAKAQKL	8	Unmodified	_VDAKAQKL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7632751464844	2	436.763635	871.512717	-0.90287	-0.00039434	0.095726	4.181E-05	-0.80714	-0.00035253	436.76367864065696	17.601	0.10645	17.601	17.528	17.634	0					5	3	2	0	0	0	0.36488	1	4447	4447		75.043	11.509	1	81752			45505	3722	30096	30217	46091	46091					0.071820887600893
VDAKAQKL	8	Unmodified	_VDAKAQKL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.763427734375	2	436.763635	871.512717	0.7413	0.00032377	-1.2865	-0.00056188	-0.54517	-0.00023811	436.7631137099036	17.826	0.11563	17.826	17.767	17.883	0					4	2	2	0	0	0	0.2498	1	5229	5229		101.6	16.685	1	497000			45506	3722	30096	30217	46092	46092					0.071820887600893
VDAPSCNAIHC	11	Unmodified	_VDAPSCNAIHC_					0	0	0		SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1;nc|ENSG00000165124|Q4LDE5-3|SVEP1	SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.314453125	2	565.241883	1128.46921	0.18626	0.00010528	-2.7074	-0.0015303	-2.5211	-0.001425	565.7420336939964	15.977	0.26083	15.977	15.803	16.064	0					7	5	2	0	0	0	0.45317	1	4502	4502		47.657	6.2307	1	75846			45507	5764	30097	30218	46093	46093					-0.0898821207099445
VDAPVLGFRV	10	Unmodified	_VDAPVLGFRV_					0	0	0			REV__KLHL34|p.R288Afs*7|3|0.44|ENSG00000185915|chrX:21656928-21656928|C/-|frameshift_variant	REV__KLHL34|p.R288Afs*7|3|0.44|ENSG00000185915|chrX:21656928-21656928|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.8093872070312	2	536.811116	1071.60768	-0.42089	-0.00022594	-0.63513	-0.00034095	-1.056	-0.00056688	536.8105620400167	28.352	0.25745	28.352	28.294	28.552	0					15	9	3	0	0	0	0.56931	1	9127	9127		37.812	0.65241	1	161100	+		45508	17052	30098	30219	46094	46094					0.07474022231281197
VDAQRQELN	9	Unmodified	_VDAQRQELN_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7731323242188	2	536.772719	1071.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.856	1	33.856	33.356	34.356	0								0	0	0	0.19847	1	12996	12996		51.193	7.5419	1		+		45509	13518	30099	30220	46095	46095					-0.002018210558617284
VDATGWLR	8	Unmodified	_VDATGWLR_					0	0	0		ANKRD65|p.Q327H|1|0.12|ENSG00000235098|chr1:1419319-1419319|C/A|missense_variant;ANKRD65|p.K336N|1|0.23|ENSG00000235098|chr1:1419292-1419292|C/A|missense_variant;ANKRD65|p.E389Rfs*7|1|0.37|ENSG00000235098|chr1:1419135-1419135|C/-|frameshift_variant;ENSG00000235098|ENST00000537107|ANKRD65	ANKRD65|p.Q327H|1|0.12|ENSG00000235098|chr1:1419319-1419319|C/A|missense_variant	ANKRD65|p.Q327H|1|0.12|ENSG00000235098|chr1:1419319-1419319|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.24737548828125	2	459.245609	916.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.688	1	13.688	13.188	14.188	0								0	0	0	1.7419	1	3388	3388		24.203	2.2429	1				45510	162	30100	30221	46096	46096					0.015086315832263608
VDAVAARV	8	Unmodified	_VDAVAARV_					0	0	0		ENSG00000255112|ENST00000526991|CHMP1B	ENSG00000255112|ENST00000526991|CHMP1B	ENSG00000255112|ENST00000526991|CHMP1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.7347106933594	2	400.734877	799.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.105	1	25.105	24.605	25.605	0								0	0	0	1.7419	1	8535	8535		66.429	10.925	1				45511	8014	30101	30222	46097	46097					0.047452465545120504
VDAVPRIV	8	Unmodified	_VDAVPRIV_					0	0	0		ENST00000476719.1_1_9:135601077-135753754:-|nuORF	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.7662353515625	2	434.766178	867.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.853	1	37.853	37.353	38.353	0								0	0	0	1.7419	1	14834	14834		44.117	3.5442	1				45512	9911	30102	30223	46098	46098					0.07874392622704818
VDDANRLLQ	9	Unmodified	_VDDANRLLQ_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2780151367188	2	522.277638	1042.54072	0.40117	0.00020952	0.25465	0.000133	0.65582	0.00034252	522.277876777525	24.317	0.13912	24.317	24.213	24.352	0					7	4	2	0	0	0	0.37197	1	7434	7434		44.117	5.3107	1	141700	+		45513	16432	30103	30224	46099	46099					0.021153669495333816
VDDIKPRQ	8	Unmodified	_VDDIKPRQ_					0	0	0			REV__ENSG00000130396|ENST00000683244|AFDN	REV__ENSG00000130396|ENST00000683244|AFDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.7691650390625	2	485.769448	969.524344	0.3506	0.00017031	-0.84135	-0.0004087	-0.49075	-0.00023839	485.76908104976235	23.858	0.15476	23.858	23.76	23.915	0					5	3	2	0	0	0	0.65148	1	7364	7364		40.778	7.9657	1	44460	+		45514	14578	30104	30225	46100	46100					0.03836285783427229
VDDKREGVI	9	Unmodified	_VDDKREGVI_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.780029296875	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.25	1	28.25	27.75	28.75	0								0	0	0	0.1633	1	9088	9088		56.721	5.5284	1				45515	2173	30105	30226	46101	46101					0.03188251092274186
VDDLLLRR	8	Unmodified	_VDDLLLRR_					0	0	0		nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27591484-27592470:-|nuORF	nc|ENSG00000115211|Q9UI10-3|EIF2B4	nc|ENSG00000115211|Q9UI10-3|EIF2B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.30059814453125	2	500.300916	998.587279	0.15699	7.8543E-05	-0.92215	-0.00046135	-0.76516	-0.00038281	500.30048316056843	22.955	0.26725	22.955	22.869	23.136	0					9	6	2	0	0	0	0.75243	1	6940	6940		26.796	0.10319	1	132750			45516	2889	30106	30227	46102	46102					0.08792851571479332
VDEEVESLH	9	Unmodified	_VDEEVESLH_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant;DNAJC13|p.I470Tfs*3|1|0.04|ENSG00000138246|chr3:132457327-132457328|-/CATTT|frameshift_variant;ENST00000471925.1_1_3:132175145-132176248:+|nuORF	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.7476196289062	2	528.745836	1055.47712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.922	1	18.922	18.422	19.422	0								0	0	0	0.28164	1	5036	5036		38.806	10.924	1				45517	4241	30107	30228	46103	46103					-0.04840038278234715
VDEHRLRA	8	Unmodified	_VDEHRLRA_					0	0	0			REV__ENST00000459905.5_1_9:139835382-139837220:-|nuORF	REV__ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2740783691406	2	498.27269	994.530826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.406	1	33.406	32.906	33.906	0								0	0	0	1.7419	1	12350	12350		38.806	3.1879	1		+		45518	15699	30108	30229	46104	46104					0.03334223734805164
VDEISEVVDT	10	Unmodified	_VDEISEVVDT_					0	0	0			REV__tr|U7SYS6|U7SYS6_FUSNUtRNA(guanine-N(1)-)-methyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00919PE=4SV=1	REV__tr|U7SYS6|U7SYS6_FUSNUtRNA(guanine-N(1)-)-methyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00919PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.267822265625	2	553.266601	1104.51865	0.8747	0.00048394	1.3978	0.00077336	2.2725	0.0012573	553.2675203316879	20.505	0.36558	20.505	20.394	20.759	0					17	7	3	0	0	0	0.46215	1	6535	6535		49.442	7.0454	1	786670	+		45519	22030	30109	30230	46105	46105					-0.02942902309564488
VDFGYLKLT	9	Unmodified	_VDFGYLKLT_					0	0	0			REV__ENST00000555422.5_1_14:76198560-76243086:+|nuORF	REV__ENST00000555422.5_1_14:76198560-76243086:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.291015625	2	528.292225	1054.5699	1.6289	0.00086051	-3.4031	-0.0017978	-1.7742	-0.00093731	528.2904424271096	50.164	0.07267	50.164	50.124	50.197	0					6	3	2	0	0	0	0.35021	1	19818	19818		45.972	0	1	86024	+		45520	20243	30110	30231	46106	46106					0.044795112457904906
VDFTQEEWEQL	11	Unmodified	_VDFTQEEWEQL_					0	0	0		ENSG00000184517|ENST00000570010|ZFP1	ENSG00000184517|ENST00000570010|ZFP1	ENSG00000184517|ENST00000570010|ZFP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	712.3238525390625	2	712.322439	1422.63033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.097	1	20.097	19.597	20.597	0								0	0	0	0.45674	1	5556	5556		8.6937	0	1				45521	7021	30111	30232	46107	46107					-0.0640846795242851
VDGKGYLL	8	Unmodified	_VDGKGYLL_					0	0	0		ENST00000472045.1_1_5:131819943-131820240:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819943-131820240:-|nuORF	ENST00000472045.1_1_5:131819943-131820240:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.7446594238281	2	432.744911	863.475269	0.73222	0.00031687	-1.4341	-0.00062059	-0.70186	-0.00030373	432.7442415665558	35.708	0.19964	35.708	35.64	35.839	0					7	5	2	0	0	0	0.41952	1	13409	13409		68.485	5.5063	1	43452			45522	3409	30112	30233	46108	46108					0.03806997494484676
VDGKTIKAQ	9	Unmodified	_VDGKTIKAQ_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;RAB11A|p.I53T|1|0.1|ENSG00000103769|chr15:65877449-65877449|T/C|missense_variant	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2793884277344	2	480.279649	958.544745	-0.18305	-8.7913E-05	-0.34207	-0.00016429	-0.52512	-0.0002522	480.2794857868858	16.895	0.2938	16.895	16.809	17.102	0					12	7	3	0	0	0	0.032052	1	4655	4655		107.01	8.3781	1	1670700			45523	2260	30113	30234	46109	46109					0.06381456443239131
VDGKTIKAQ	9	Unmodified	_VDGKTIKAQ_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;RAB11A|p.I53T|1|0.1|ENSG00000103769|chr15:65877449-65877449|T/C|missense_variant	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.2792053222656	2	480.279649	958.544745	-0.27012	-0.00012973	0.15056	7.2312E-05	-0.11956	-5.7422E-05	480.2796815688041	16.605	0.11082	16.605	16.537	16.647	0					10	4	3	0	0	0	0.032052	1	4015	4015		107.01	24.767	1	282020			45524	2260	30113	30234	46110	46110					0.06381456443239131
VDGKTIKAQ	9	Unmodified	_VDGKTIKAQ_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;RAB11A|p.I53T|1|0.1|ENSG00000103769|chr15:65877449-65877449|T/C|missense_variant	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27935791015625	2	480.279649	958.544745	-0.49998	-0.00024013	0.081197	3.8997E-05	-0.41879	-0.00020113	480.27968969383556	16.843	0.30235	16.843	16.744	17.047	0					12	6	3	0	0	0	0.021961	1	4882	4882		118.74	5.3315	1	1038800			45525	2260	30113	30234	46111	46111					0.06381456443239131
VDGLAVVKF	9	Unmodified	_VDGLAVVKF_					0	0	0			REV__ENSG00000020633|ENST00000308873|RUNX3	REV__ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2810363769531	2	474.28166	946.548768	-0.59504	-0.00028221	-0.53678	-0.00025458	-1.1318	-0.0005368	474.28163169776224	38.602	0.3137	38.602	38.449	38.763	0					10	6	2	0	0	0	0.16524	1	15202	15202		65.803	7.0212	1	123210	+		45526	12935	30114	30235	46112	46112					0.07335545936962262
VDGLGLTA	8	Unmodified	_VDGLGLTA_					0	0	0			REV__ENST00000466110.5_1_2:74595806-74598423:-|nuORF	REV__ENST00000466110.5_1_2:74595806-74598423:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2098693847656	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.092	1	51.092	50.592	51.592	0								0	0	0	1.7419	1	20042	20042		35.201	1.6851	1		+		45527	19418	30115	30236	46113	46113					0.019344490519870305
VDGLIYNR	8	Unmodified	_VDGLIYNR_					0	0	0		ENST00000435074.5_1_6:33080250-33086274:+|nuORF	ENST00000435074.5_1_6:33080250-33086274:+|nuORF	ENST00000435074.5_1_6:33080250-33086274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.25823974609375	2	475.258717	948.50288	-0.20932	-9.9479E-05	-0.38193	-0.00018152	-0.59125	-0.000281	475.25855547109944	33.846	0.30986	33.846	33.703	34.013	0					22	12	3	0	0	0	0.7126	1	11004	11004		31.955	2.8053	1	93756			45528	9521	30116	30237	46114	46114					0.02656900754709568
VDGNRQII	8	Unmodified	_VDGNRQII_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7561950683594	2	457.756341	913.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.634	1	30.634	30.134	31.134	0								0	0	0	1.7419	1	10083	10083		31.955	1.4512	1				45529	2353	30117	30238	46115	46115					0.03792016611953386
VDGYPHPRS	9	Unmodified	_VDGYPHPRS_					0	0	0		DSCAML1|p.P778Hfs*36|1|0.26|ENSG00000177103|chr11:117504953-117504953|G/-|frameshift_variant	DSCAML1|p.P778Hfs*36|1|0.26|ENSG00000177103|chr11:117504953-117504953|G/-|frameshift_variant	DSCAML1|p.P778Hfs*36|1|0.26|ENSG00000177103|chr11:117504953-117504953|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.1711120605469	3	343.170041	1026.48829	3.0253	0.0010382	-0.11938	-4.0969E-05	2.9059	0.00099723	343.1700782714419	18.345	0.26737	18.345	18.288	18.555	0					10	5	3	0	0	0	0.45358	1	5488	5488		29.17	0	1	933650			45530	849	30118	30239	46116	46116					-0.02389171393451761
VDHISEEFKK	10	Unmodified	_VDHISEEFKK_					0	0	0			REV__nc|ENSG00000115808|O43815-2|STRN	REV__nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	411.2148742675781	3	411.215427	1230.62445	0.64831	0.00026659	-1.3868	-0.00057027	-0.73848	-0.00030367	411.2149438382402	12.752	0.15664	12.752	12.682	12.839	0					17	8	3	0	0	0	0.59277	1	2430	2430		35.152	1.2304	1	141470	+		45531	14124	30119	30240	46117	46117					0.018364783265496953
VDHISEEFKK	10	Unmodified	_VDHISEEFKK_					0	0	0			REV__nc|ENSG00000115808|O43815-2|STRN	REV__nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.2149963378906	3	411.215427	1230.62445	-0.082079	-3.3752E-05	-1.4222	-0.00058484	-1.5043	-0.00061859	411.2149582407466	12.754	0.16501	12.754	12.669	12.834	0					15	9	3	0	0	0	0.52275	1	2490	2490		42.864	14.288	1	133830	+		45532	14124	30119	30240	46118	46118					0.018364783265496953
VDIAPTKA	8	Unmodified	_VDIAPTKA_					0	0	0		PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.7372741699219	2	407.737086	813.459619	-0.098305	-4.0082E-05	0.80376	0.00032772	0.70546	0.00028764	407.7372639320702	29.493	0.33065	29.493	29.297	29.628	0					13	8	2	0	0	0	0.3961	1	9907	9907		71.296	4.8664	1	47271			45533	11956	30120	30241	46119	46119					0.04542710977432307
VDIGQGLL	8	Unmodified	_VDIGQGLL_					0	0	0			REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF	REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.737060546875	2	407.737086	813.459619	-0.57003	-0.00023242	0.4354	0.00017753	-0.13463	-5.4893E-05	407.7372299620507	29.767	0.29974	29.767	29.512	29.812	0					18	7	3	0	0	0	0.60719	1	10673	10673		47.916	0	1	328300	+		45534	20326	30121	30242	46120	46120					0.04542710977432307
VDISAPKI	8	Unmodified	_VDISAPKI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7525939941406	2	421.752736	841.490919	-0.32999	-0.00013917	-0.1127	-4.7532E-05	-0.44269	-0.00018671	421.75266393325666	35.94	0.26312	35.94	35.784	36.047	0					8	5	2	0	0	0	0.32597	1	13932	13932		79.713	11.228	1	140800			45535	3401	30122	30243	46121	46121					0.06383284011531032
VDIVMNHHL	9	Unmodified	_VDIVMNHHL_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.2793579101562	2	539.279126	1076.5437	0.30225	0.000163	0.85453	0.00046083	1.1568	0.00062383	539.2796996632422	31.372	0.15483	31.372	31.316	31.471	0					6	3	2	0	0	0	0.063171	1	11836	11836		64.207	7.4862	1	178650			45536	3841	30123	30244	46122	46122					0.008489188026715055
VDIVMNHHL	9	Unmodified	_VDIVMNHHL_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8550720214844	3	359.855176	1076.5437	1.2452	0.00044811	-1.3868	-0.00049906	-0.14158	-5.0949E-05	359.85477435568856	31.362	0.26315	31.362	31.258	31.521	0					13	5	4	0	0	0	0.36892	1	11728	11728		44.377	9.2252	1	725030			45537	3841	30123	30244	46123	46123					0.008489188026715055
VDIWAAGVI	9	Unmodified	_VDIWAAGVI_					0	0	0		nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1;nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2	nc|ENSG00000133083|O15075-2|DCLK1	nc|ENSG00000133083|O15075-2|DCLK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.263916015625	2	472.26601	942.517468	-2.4324	-0.0011488	-1.4371	-0.00067872	-3.8696	-0.0018275	472.2654818987122	42.551	0.20913	42.551	42.467	42.676	0					21	12	2	0	0	0	0.50461	1	14847	14847		31.955	3.7006	1	120640			45538	3835	30124	30245	46124	46124					0.04390972902854173
VDKLMPVI	8	Unmodified	_VDKLMPVI_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7721862792969	2	457.772614	913.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.335	1	42.335	41.835	42.835	0								0	0	0	1.7419	1	16618	16618		60.972	9.6365	1				45539	7554	30125	30246	46125	46125					0.07045087690585206
VDKRELIAL	9	Unmodified	_VDKRELIAL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.8246459960938	2	528.824224	1055.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.771	1	34.771	34.271	35.271	0								0	0	0	0.3245	1	11741	11741		30.318	3.6248	1				45540	2727	30126	30247	46126	46126					0.10830291402749026
VDKSIPPPK	9	Unmodified	_VDKSIPPPK_					0	0	0			REV__ENST00000575787.1_1_17:6802758-6803315:+|nuORF	REV__ENST00000575787.1_1_17:6802758-6803315:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.7928161621094	2	490.792392	979.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.945	1	27.945	27.445	28.445	0								0	0	0	0.28666	1	9210	9210		37.812	0.65241	1		+		45541	20412	30127	30248	46127	46127					0.07962930965652504
VDLDVVET	8	Unmodified	_VDLDVVET_					0	0	0		nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	nc|ENSG00000169894|Q02505-5|MUC3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.22991943359375	2	445.22929	888.444028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.428	1	26.428	25.928	26.928	0								0	0	0	1.7419	1	9115	9115		50.025	0	1				45542	6193	30128	30249	46128	46128					-0.004656203302715767
VDLGPPLMEK	10	Oxidation (M)	_VDLGPPLM(Oxidation (M))EK_		VDLGPPLM(1)EK		VDLGPPLM(60)EK	0	0	1		ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;KIAA1217|p.N1661Tfs*23|1|0.07|ENSG00000120549|chr10:24544247-24544247|A/-|frameshift_variant;KIAA1217|p.Q1199Kfs*12|1|0.25|ENSG00000120549|chr10:24542749-24542749|C/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;KIAA1217|p.Y714Ifs*4|1|0.27|ENSG00000120549|chr10:24513391-24513392|-/A|frameshift_variant;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.R976Kfs*8|1|0.4|ENSG00000120549|chr10:24527957-24527958|-/A|frameshift_variant;KIAA1217|p.R976Gfs*16|1|0.31|ENSG00000120549|chr10:24527958-24527958|A/-|frameshift_variant;KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.19732666015625	3	372.198609	1113.574	-2.1035	-0.00078291	-0.94142	-0.0003504	-3.0449	-0.0011333	372.19814017286456	27.949	0.38632	27.949	27.854	28.24	0					18	9	3	0	0	0	0.36647	1	9216	9216		59.931	13.474	1	474340			45543	3177	30129	30250	46129	46129		139			0.02175232677200256
VDLIALSTSA	10	Unmodified	_VDLIALSTSA_					0	0	0			REV__nc|ENSG00000293392|Q8IVK1-2|GLYCAM1	REV__nc|ENSG00000293392|Q8IVK1-2|GLYCAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.2798156738281	2	495.279315	988.544076	0.7444	0.00036869	-0.82798	-0.00041008	-0.083581	-4.1396E-05	495.2787292100145	39.101	0.10213	39.101	39.066	39.168	0					7	4	2	0	0	0	0.60076	1	14877	14877		34.173	2.2177	1	43670	+		45544	21261	30130	30251	46130	46130					0.049346170035164505
VDLKGPKV	8	Unmodified	_VDLKGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	428.26837158203125	2	428.268553	854.522553	-0.20591	-8.8186E-05	0.069043	2.9569E-05	-0.13687	-5.8617E-05	428.2684776109488	24.525	0.53561	24.525	24.124	24.66	0					27	12	3	0	0	0	0.65148	1	7554	7554		40.778	0	1	234650			45545	3401	30131	30252	46131	46131					0.08947276765479728
VDLQEEAPK	9	Unmodified	_VDLQEEAPK_					0	0	0			REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF	REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7667236328125	2	514.766571	1027.51859	-0.49022	-0.00025235	0.54901	0.00028261	0.058785	3.0261E-05	514.7668124447873	26.401	0.21651	26.401	26.293	26.509	0					7	4	2	0	0	0	0.35021	1	9456	9456		45.972	0.020292	1	648420	+		45546	15263	30132	30253	46132	46132					0.005931424811024044
VDLQSPAAQH	10	Unmodified	_VDLQSPAAQH_					0	0	0		MCM4|p.D66H|1|0.45|ENSG00000104738|chr8:47961641-47961641|G/C|missense_variant	MCM4|p.D66H|1|0.45|ENSG00000104738|chr8:47961641-47961641|G/C|missense_variant	MCM4|p.D66H|1|0.45|ENSG00000104738|chr8:47961641-47961641|G/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.2698974609375	2	533.269813	1064.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.565	1	35.565	35.065	36.065	0								0	0	0	0.37129	1	12678	12678		39.253	5.0803	1				45547	11352	30133	30254	46133	46133					-0.004609195675357114
VDLSAPKV	8	Unmodified	_VDLSAPKV_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.D1643Tfs*9|1|0.12|ENSG00000185567|chr14:104950524-104950524|C/-|frameshift_variant;AHNAK2|p.P2536Lfs*14|1|0.11|ENSG00000185567|chr14:104947844-104947844|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.7451171875	2	414.744911	827.475269	-0.37544	-0.00015571	0.37796	0.00015676	0.0025137	1.0425E-06	414.7451185402415	32.433	0.32016	32.433	32.219	32.54	0					13	6	3	0	0	0	0.46013	1	12218	12218		64.207	0	1	229790			45548	7088	30134	30255	46134	46134					0.05462997494475985
VDLSAPKV	8	Unmodified	_VDLSAPKV_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.D1643Tfs*9|1|0.12|ENSG00000185567|chr14:104950524-104950524|C/-|frameshift_variant;AHNAK2|p.P2536Lfs*14|1|0.11|ENSG00000185567|chr14:104947844-104947844|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.74493408203125	2	414.744911	827.475269	1.004	0.0004164	-1.2238	-0.00050758	-0.21983	-9.1175E-05	414.7444329161129	32.412	0.37027	32.412	32.203	32.573	0					13	7	2	0	0	0	0.46013	1	12234	12234		64.207	0	1	360880			45549	7088	30134	30255	46135	46135					0.05462997494475985
VDLSPKGV	8	Unmodified	_VDLSPKGV_					0	0	0		tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.7371826171875	2	407.737086	813.459619	-1.3966	-0.00056946	1.0584	0.00043156	-0.33822	-0.0001379	407.7375106085472	29.481	0.31503	29.481	29.31	29.625	0					21	12	2	0	0	0	0.53424	1	9553	9553		56.721	1.2168	1	116050			45550	22765	30135	30256	46136	46136					0.04542710977443676
VDLSYKAWK	9	Unmodified	_VDLSYKAWK_					0	0	0			REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.3050537109375	2	555.303124	1108.5917	1.4174	0.00078707	0.92162	0.00051178	2.339	0.0012988	555.3037442670724	42.284	0.16517	42.284	42.192	42.357	0					15	10	2	0	0	0	0.41113	1	13459	13459		40.778	1.5253	1	97086	+		45551	17831	30136	30257	46137	46137					0.04174315994373501
VDLVWRIL	8	Unmodified	_VDLVWRIL_					0	0	0			REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.3128356933594	2	507.310752	1012.60695	2.9448	0.0014939	0.81564	0.00041378	3.7604	0.0019077	507.31137400450973	42.773	0.33216	42.773	42.651	42.983	0					32	10	4	0	0	0	0.5535	1	17075	17075		44.117	16.235	1	837640	+		45552	20109	30137	30258	46138	46138					0.1011522758224146
VDMHAAADI	9	Unmodified	_VDMHAAADI_					0	0	0		STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.71942138671875	2	471.72111	941.427666	-0.56832	-0.00026809	-3.7034	-0.001747	-4.2717	-0.002015	471.7195517374263	24.912	0.19799	24.912	24.771	24.969	0					8	4	2	0	0	0	0.32741	1	7834	7834		47.916	0	1	96532			45553	3059	30138	30259	46139	46139					-0.04539024768030231
VDMVPGKPM	9	Unmodified	_VDMVPGKPM_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2452697753906	2	487.245906	972.477259	0.71578	0.00034876	-1.8005	-0.00087726	-1.0847	-0.0005285	487.244803168538	31.852	0.37686	31.852	31.654	32.031	0					14	9	2	0	0	0	0.2873	1	11638	11638		51.335	0.14276	1	103820			45554	5177	30139	30260	46140	46140					-0.010080330835648965
VDMYLKDK	8	Unmodified	_VDMYLKDK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.2646789550781	2	506.26261	1010.51067	3.7514	0.0018992	0.43681	0.00022114	4.1882	0.0021204	506.262994734841	37.068	0.2085	37.068	36.99	37.198	0					22	11	3	0	0	0	0.3961	1	12536	12536		71.296	4.8664	1	255600			45555	3738	30140	30261	46141	46141					0.005832919599697561
VDNTQVPSY	9	Unmodified	_VDNTQVPSY_					0	0	0		nc|ENSG00000162065|Q9ULP9-2|TBC1D24;ENSG00000162065|ENST00000646147|TBC1D24	nc|ENSG00000162065|Q9ULP9-2|TBC1D24	nc|ENSG00000162065|Q9ULP9-2|TBC1D24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7796936035156	2	511.743096	1021.47164	1.4043	0.00071863	-1.5751	-0.00080606	-0.17086	-8.7436E-05	511.742636286005	41.151	0.17989	41.151	41.06	41.24	0					6	4	2	0	0	0	0.33044	1	16324	16324		47.657	8.8512	1	41522			45556	5440	30141	30262	46142	46142					-0.03823717070042676
VDPGKLKV	8	Unmodified	_VDPGKLKV_					0	0	0			REV__AHNAK|p.E5274K|1|0.34|ENSG00000124942|chr11:62518597-62518597|C/T|missense_variant	REV__AHNAK|p.E5274K|1|0.34|ENSG00000124942|chr11:62518597-62518597|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.2677307128906	2	428.268553	854.522553	0.23206	9.9383E-05	-0.73511	-0.00031482	-0.50305	-0.00021544	428.2681509504281	24.407	0.52614	24.407	24.064	24.59	0					34	16	3	0	0	0	0.63077	1	7106	7106		44.117	1.7207	1	186710	+		45557	12117	30142	30263	46143	46143					0.0894727676545699
VDQPDLDP	8	Unmodified	_VDQPDLDP_					0	0	0		CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant;CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant;ENSG00000074276|ENST00000261944|CDHR2	CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant	CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	449.7110900878906	2	449.711265	897.407977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.806	1	29.806	29.306	30.306	0								0	0	0	1.7419	1	11077	11077		25.574	3.8717	1				45558	456	30143	30264	46144	46144					-0.04483077507143207
VDQQTKKI	8	Unmodified	_VDQQTKKI_					0	0	0			REV__SH3BGRL|p.K19T|1|0.55|ENSG00000131171|chrX:81276994-81276994|A/C|missense_variant	REV__SH3BGRL|p.K19T|1|0.55|ENSG00000131171|chrX:81276994-81276994|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2788391113281	2	480.279649	958.544745	0.050099	2.4062E-05	-0.69265	-0.00033266	-0.64255	-0.0003086	480.27926194079566	29.865	0.45381	29.865	29.686	30.14	0					48	18	3	0	0	0	0.74405	1	9409	9409		27.882	0	1	851150	+		45559	21511	30144	30265	46145	46145					0.06381456443239131
VDQVTKAGP	9	Unmodified	_VDQVTKAGP_					0	0	0		SLC6A7|p.A360T|1|0.15|ENSG00000011083|chr5:150202694-150202694|G/A|missense_variant	SLC6A7|p.A360T|1|0.15|ENSG00000011083|chr5:150202694-150202694|G/A|missense_variant	SLC6A7|p.A360T|1|0.15|ENSG00000011083|chr5:150202694-150202694|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7505798339844	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.444	1	33.444	32.944	33.944	0								0	0	0	0.27025	1	11221	11221		40.778	1.5253	1				45560	22418	30145	30266	46146	46146					0.02669194517818596
VDREVPVAA	9	Unmodified	_VDREVPVAA_					0	0	0		ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2641906738281	2	478.263999	954.513445	-0.052128	-2.4931E-05	0.29831	0.00014267	0.24618	0.00011774	478.26392729342973	25.267	0.18595	25.267	25.176	25.362	0					12	5	3	0	0	0	0.36892	1	7573	7573		44.377	0	1	378070			45561	3284	30146	30267	46147	46147					0.03436883409131042
VDREVPVAA	9	Unmodified	_VDREVPVAA_					0	0	0		ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.2638854980469	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.55	1	25.55	25.05	26.05	0								0	0	0	0.11736	1	8745	8745		67.494	17.469	1				45562	3284	30146	30267	46148	46148					0.03436883409131042
VDREVPVAA	9	Unmodified	_VDREVPVAA_					0	0	0		ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2637023925781	2	478.263999	954.513445	0.65253	0.00031208	-0.78385	-0.00037489	-0.13132	-6.2807E-05	478.26361484322564	25.544	0.9967	25.544	25.188	26.185	0					47	18	4	0	0	0	0.10915	1	9068	9068		77.318	22.541	1	5665500			45563	3284	30146	30267	46149	46149					0.03436883409131042
VDREVPVAA	9	Unmodified	_VDREVPVAA_					0	0	0		ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	ENSG00000122711|ENST00000379721|SPINK4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2637634277344	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.463	1	25.463	24.963	25.963	0								0	0	0	0.0537	1	8918	8918		85.161	20.954	1				45564	3284	30146	30267	46150	46150					0.03436883409131042
VDRLVAQI	8	Unmodified	_VDRLVAQI_					0	0	0		ENSG00000181274|ENST00000371019|FRAT2;ENSG00000165879|ENST00000371021|FRAT1	ENSG00000181274|ENST00000371019|FRAT2	ENSG00000181274|ENST00000371019|FRAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2765808105469	2	457.276909	912.539266	-0.4348	-0.00019882	-0.1098	-5.0208E-05	-0.5446	-0.00024903	457.2768589717471	34.939	0.16754	34.939	34.88	35.048	0					6	3	2	0	0	0	0.46905	1	13454	13454		63.306	4.5243	1	134620			45565	5837	30147	30268	46151	46151					0.07949777651424483
VDRPLRSA	8	Unmodified	_VDRPLRSA_					0	0	0			REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2646179199219	2	457.264333	912.514114	-0.43499	-0.0001989	1.0504	0.0004803	0.6154	0.0002814	457.2646718735008	47.337	0.91858	47.337	47.131	48.049	0					60	48	2	0	0	0	0.74405	1	18976	18976		27.882	2.4321	1	78421	+		45566	18569	30148	30269	46152	46152					0.054357228488470355
VDRVWTAQP	9	Unmodified	_VDRVWTAQP_					0	0	0			REV__ENSG00000143185|ENST00000367819|XCL2	REV__ENSG00000143185|ENST00000367819|XCL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.28369140625	2	536.282723	1070.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.6	1	34.6	34.1	35.1	0								0	0	0	0.30504	1	12262	12262		34.173	0	1		+		45567	15173	30149	30270	46153	46153					0.01843974674761739
VDRYLKRK	8	Unmodified	_VDRYLKRK_					0	0	0			REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	359.8878479003906	3	359.889097	1076.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.296	1	38.296	37.796	38.796	0								0	0	0	1.7419	1	15019	15019		21.96	0.27414	1		+		45568	17295	30150	30271	46154	46154					0.11020533216742479
VDSCIRSLQ	9	Unmodified	_VDSCIRSLQ_					0	0	0		nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2;CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant;CTNND2|p.T336Pfs*14|1|0.43|ENSG00000169862|chr5:11384837-11384837|G/-|frameshift_variant	nc|ENSG00000169862|Q9UQB3-2|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.26611328125	2	510.760766	1019.50698	3.0716	0.0015688	-0.82256	-0.00042013	2.249	0.0011487	510.7597175709009	37.907	1.1935	37.907	37.535	38.729	0					62	25	4	0	0	0	0.4966	1	15012	15012		32.812	1.2826	1	1970200			45569	6190	30151	30272	46155	46155					-0.0019937781389671727
VDSDEMWNV	9	Unmodified	_VDSDEMWNV_					0	0	0			REV__ENST00000441282.1_1_13:65532685-65533108:-|nuORF	REV__ENST00000441282.1_1_13:65532685-65533108:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7288818359375	2	547.726589	1093.43863	3.8333	0.0020996	0.38626	0.00021157	4.2196	0.0023112	547.7267708877139	17.554	0.75948	17.554	17.447	18.206	0					41	15	4	0	0	0	0.32741	1	5246	5246		47.916	0.25827	1	2763100	+		45570	13564	30152	30273	46156	46156					-0.10435667184401609
VDSFKAKGA	9	Unmodified	_VDSFKAKGA_					0	0	0		nc|ENSG00000168944|Q8N960-3|CEP120;CEP120|p.L565*|1|0.38|ENSG00000168944|chr5:123385020-123385020|A/-|frameshift_variant;CEP120|p.K738Rfs*29|2|0.21|ENSG00000168944|chr5:123377519-123377519|T/-|frameshift_variant;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.7547302246094	2	461.753267	921.491981	-0.71593	-0.00033058	3.6679	0.0016936	2.9519	0.0013631	461.7550753943971	15.277	0.21939	15.277	15.19	15.41	0					12	5	3	0	0	0	0.16002	1	3917	3917		66.429	2.222	1	3343400			45571	476	30153	30274	46157	46157					0.028094983804294316
VDSTKAVK	8	Unmodified	_VDSTKAVK_					0	0	0			REV__CASD1|p.L198V|1|0.38|ENSG00000127995|chr7:94533766-94533766|T/G|missense_variant	REV__CASD1|p.L198V|1|0.38|ENSG00000127995|chr7:94533766-94533766|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.7501220703125	2	424.247818	846.481082	-0.02164	-9.1808E-06	-0.21558	-9.1458E-05	-0.23722	-0.00010064	424.2476693209924	26.251	0.40165	26.251	26.121	26.523	0					19	9	3	0	0	0	0.79719	1	8541	8541		18.324	0.95945	1	1119100	+		45572	12331	30154	30275	46158	46158					0.051700960061339174
VDTIGRFAK	9	Unmodified	_VDTIGRFAK_					0	0	0			REV__ENST00000518140.5_1_5:168199753-168727722:-|nuORF	REV__ENST00000518140.5_1_5:168199753-168727722:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.78790283203125	2	503.787641	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.729	1	21.729	21.229	22.229	0								0	0	0	0.28996	1	6030	6030		37.159	0	1		+		45573	16977	30155	30276	46159	46159					0.05817162680136789
VDTKYPDDY	9	Unmodified	_VDTKYPDDY_					0	0	0			REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.2491455078125	2	558.248212	1114.48187	1.7409	0.00097188	0.21203	0.00011836	1.953	0.0010902	558.2482835394324	33.649	3.7388	33.649	33.388	37.127	0					172	103	2	0	0	0	0.37197	1	13836	13836		44.117	6.9577	1	21504000	+		45574	17423	30156	30277	46160	46160					-0.07079154135476529
VDVADSGTFCD	11	Unmodified	_VDVADSGTFCD_					0	0	0			REV__nc|ENSG00000166153|Q8N2C3|DEPDC4	REV__nc|ENSG00000166153|Q8N2C3|DEPDC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.7288208007812	2	564.729329	1127.4441	0.13566	7.6611E-05	-1.5455	-0.00087278	-1.4098	-0.00079617	564.7286845354994	16.244	0.11506	16.244	16.189	16.304	0					7	4	2	0	0	0	0.74306	1	3864	3864		23.523	1.5628	1	36902	+		45575	16096	30157	30278	46161	46161					-0.1145198839258228
VDVDGGRSL	9	Unmodified	_VDVDGGRSL_					0	0	0		ENSG00000115425|ENST00000265322|PECR;nc|ENSG00000115425|Q9BY49-2|PECR	ENSG00000115425|ENST00000265322|PECR	ENSG00000115425|ENST00000265322|PECR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2381591796875	2	459.237981	916.461409	-0.9404	-0.00043187	0.61898	0.00028426	-0.32141	-0.00014761	459.2381641097391	30.716	0.19761	30.716	30.617	30.815	0					13	7	2	0	0	0	0.41113	1	10102	10102		40.778	7.2626	1	205790			45576	2908	30158	30279	46162	46162					-0.00016280004626878508
VDVDQSSLIY	10	Unmodified	_VDVDQSSLIY_					0	0	0		nc|ENSG00000124900|Q9BSJ1-2|TRIM51;ENSG00000124900|ENST00000449290|TRIM51	nc|ENSG00000124900|Q9BSJ1-2|TRIM51	nc|ENSG00000124900|Q9BSJ1-2|TRIM51	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.785888671875	2	569.784961	1137.55537	1.7539	0.00099937	-1.0793	-0.00061495	0.67467	0.00038442	569.7846319215809	31.828	0.37458	31.828	31.696	32.07	0					20	9	3	0	0	0	0.36476	1	11620	11620		60.118	7.0293	1	134900			45577	3399	30159	30280	46163	46163					-0.00790605692986901
VDVEQHTL	8	Unmodified	_VDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.7394714355469	2	470.740357	939.46616	-0.43072	-0.00020276	-2.5506	-0.0012007	-2.9814	-0.0014034	470.7391004170323	27.879	0.19884	27.879	27.708	27.907	0					11	6	2	0	0	0	0.48092	1	8636	8636		62.107	6.6032	1	115660			45578	3889;5220	30160	30281	46164	46164					-0.005993958618546458
VDVEQHTL	8	Unmodified	_VDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.7398681640625	2	470.740357	939.46616	-0.61167	-0.00028794	-2.7539	-0.0012964	-3.3655	-0.0015843	470.73901036868983	28.117	0.33786	28.117	27.953	28.291	0					17	8	3	0	0	0	0.30066	1	9908	9908		82.75	19.444	1	510350			45579	3889;5220	30160	30281	46165	46165					-0.005993958618546458
VDVEQHTL	8	Unmodified	_VDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7403564453125	2	470.740357	939.46616	0.60212	0.00028344	-1.8078	-0.00085099	-1.2056	-0.00056754	470.7392761752749	28.132	0.33566	28.132	27.996	28.331	0					14	7	3	0	0	0	0.24433	1	10285	10285		136.27	40.078	1	1310600			45580	3889;5220	30160	30281	46166	46166					-0.005993958618546458
VDVEQHTL	8	Unmodified	_VDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7390441894531	2	470.740357	939.46616	-2.3136	-0.0010891	1.0911	0.00051363	-1.2225	-0.00057547	470.74063832774357	27.949	0.1779	27.949	27.854	28.032	0					7	4	2	0	0	0	0.24999	1	9201	9201		101.25	15.893	1	241710			45581	3889;5220	30160	30281	46167	46167					-0.005993958618546458
VDVEQHTL	8	Unmodified	_VDVEQHTL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.7400207519531	2	470.740357	939.46616	2.5126	0.0011828	-3.6007	-0.001695	-1.0881	-0.00051223	470.7386339573709	28.083	0.26827	28.083	27.976	28.245	0					12	5	3	0	0	0	0.22872	1	10142	10142		124.08	41.775	1	1099300			45582	3889;5220	30160	30281	46168	46168					-0.005993958618546458
VDVGDLAVTY	10	Unmodified	_VDVGDLAVTY_					0	0	0			REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF	REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.27001953125	2	526.268947	1050.52334	0.96709	0.00050895	-0.64165	-0.00033768	0.32544	0.00017127	526.2686180821528	38.36	0.17915	38.36	38.282	38.461	0					8	6	2	0	0	0	0.60076	1	15036	15036		34.173	0	1	53382	+		45583	18015	30161	30282	46169	46169					0.00010026623863268469
VDVHRVSL	8	Unmodified	_VDVHRVSL_					0	0	0		ENST00000425128.6_1_3:27417698-27417842:-|nuORF	ENST00000425128.6_1_3:27417698-27417842:-|nuORF	ENST00000425128.6_1_3:27417698-27417842:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7668762207031	2	462.766709	923.518865	-0.28544	-0.00013209	0.47484	0.00021974	0.1894	8.7646E-05	462.7668260613362	22.296	0.2351	22.296	22.202	22.437	0					7	5	2	0	0	0	0.65148	1	6626	6626		40.778	1.972	1	236100			45584	9428	30162	30283	46170	46170					0.054046069916125816
VDVLLNGA	8	Unmodified	_VDVLLNGA_					0	0	0			REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF	REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.72930908203125	2	400.729261	799.443968	0.93782	0.00037581	-1.0212	-0.00040924	-0.083415	-3.3427E-05	400.72879460599614	26.353	0.46441	26.353	26.083	26.547	0					16	11	2	0	0	0	0.59411	1	9063	9063		50.025	2.1089	1	426550	+		45585	12173	30163	30284	46171	46171					0.036224244603772604
VDVLLNGA	8	Unmodified	_VDVLLNGA_					0	0	0			REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF	REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.7289733886719	2	400.729261	799.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.016	1	26.016	25.516	26.516	0								0	0	0	1.7419	1	8128	8128		47.916	7.343	1		+		45586	12173	30163	30284	46172	46172					0.036224244603772604
VDVRGPDWHL	10	Unmodified	_VDVRGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	597.3058471679688	2	597.306729	1192.59891	-1.8358	-0.0010965	1.1366	0.00067889	-0.69918	-0.00041762	597.3072826439121	34.826	0.48077	34.826	34.673	35.153	0					22	16	2	0	0	0	0.65213	1	12334	12334		27.882	1.1893	1	58050			45587	3401	30164	30285	46173	46173					0.010310485948139103
VDVSAPKL	8	Unmodified	_VDVSAPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.74468994140625	2	414.744911	827.475269	1.0358	0.00042961	-1.3758	-0.00057059	-0.33993	-0.00014099	414.74444169104095	33.185	0.342	33.185	33.084	33.426	0					11	9	2	0	0	0	0.50061	1	12263	12263		60.118	4.6141	1	177870			45588	3401	30165	30286	46174	46174					0.054629974944646165
VDVSAPKL	8	Unmodified	_VDVSAPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.7451171875	2	414.744911	827.475269	1.0059	0.00041721	-0.55016	-0.00022817	0.45579	0.00018904	414.7445296057675	33.099	0.35213	33.099	33.046	33.399	0					13	7	2	0	0	0	0.27635	1	12560	12560		90.37	5.4543	1	399170			45589	3401	30165	30286	46175	46175					0.054629974944646165
VDVSGPKL	8	Unmodified	_VDVSGPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.7381896972656	2	407.737086	813.459619	-0.12921	-5.2684E-05	0.1227	5.0028E-05	-0.0065136	-2.6558E-06	407.737168635642	30.289	0.3181	30.289	30.102	30.42	0					23	11	3	0	0	0	0.48092	1	9601	9601		62.107	17.991	1	144350			45590	3401	30166	30287	46176	46176					0.04542710977432307
VDVSGPKL	8	Unmodified	_VDVSGPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7368469238281	2	407.737086	813.459619	-0.56978	-0.00023232	0.50739	0.00020688	-0.062384	-2.5436E-05	407.73725387708583	30.6	0.43384	30.6	30.354	30.788	0					22	10	3	0	0	0	0.24806	1	11038	11038		104.75	36.262	1	643980			45591	3401	30166	30287	46177	46177					0.04542710977432307
VDVSGPKL	8	Unmodified	_VDVSGPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.7371520996094	2	407.737086	813.459619	-0.098239	-4.0055E-05	-0.48416	-0.00019741	-0.5824	-0.00023747	407.7370674676569	30.374	0.29436	30.374	30.186	30.48	0					11	7	2	0	0	0	0.46013	1	10309	10309		64.207	10.856	1	90481			45592	3401	30166	30287	46178	46178					0.04542710977432307
VDVSGPKM	8	Unmodified	_VDVSGPKM_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	416.7152099609375	2	416.715296	831.416039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.781	1	26.781	26.281	27.281	0								0	0	0	1.7419	1	8461	8461		45.972	7.1661	1				45593	3401	30167	30288	46179	46179					-0.00641221791352109
VDVSGPKM	8	Unmodified	_VDVSGPKM_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.7156677246094	2	416.715296	831.416039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.882	1	26.882	26.382	27.382	0								0	0	0	1.7419	1	8721	8721		56.721	12.604	1				45594	3401	30167	30288	46180	46180					-0.00641221791352109
VDVSVPKL	8	Unmodified	_VDVSVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	428.760498046875	2	428.760561	855.506569	2.4913	0.0010682	-1.7549	-0.00075243	0.73637	0.00031573	428.75930504759947	39.271	0.75751	39.271	38.712	39.469	0					38	16	4	0	0	0	0.3049	1	15440	15440		82.241	13.756	1	288860			45595	3401	30168	30289	46181	46181					0.07303570528563341
VDVSVPKV	8	Unmodified	_VDVSVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7521057128906	2	421.752736	841.490919	1.0203	0.00043033	-0.082469	-3.4782E-05	0.93786	0.00039554	421.75276496226275	34.997	0.36173	34.997	34.878	35.24	0					15	9	2	0	0	0	0.46013	1	13117	13117		64.207	10.856	1	86786			45596	3401	30169	30290	46182	46182					0.06383284011531032
VDVSVPKV	8	Unmodified	_VDVSVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7522277832031	2	421.752736	841.490919	0.8495	0.00035828	-1.0803	-0.00045562	-0.2308	-9.734E-05	421.7522798415757	35.026	0.69385	35.026	34.495	35.189	0					26	19	2	0	0	0	0.46013	1	13557	13557		64.207	3.2353	1	129840			45597	3401	30169	30290	46183	46183					0.06383284011531032
VDVTAPKV	8	Unmodified	_VDVTAPKV_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.74505615234375	2	414.744911	827.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.228	1	32.228	31.728	32.728	0								0	0	0	1.7419	1	10407	10407		42.396	0	1				45598	7088	30170	30291	46184	46184					0.05462997494475985
VDWLTEKM	8	Oxidation (M)	_VDWLTEKM(Oxidation (M))_		VDWLTEKM(1)		VDWLTEKM(46)	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.7532348632812	2	519.252243	1036.48993	0.55767	0.00028957	-0.40153	-0.0002085	0.15614	8.1075E-05	519.2520591108673	36.304	0.19183	36.304	36.214	36.406	0					16	10	2	0	0	0	0.61925	1	11901	11901		45.972	10.354	1	61190			45599	4457;5432;5192	30171	30292	46185	46185		184			-0.02685298419692117
VDWLTEKM	8	Oxidation (M)	_VDWLTEKM(Oxidation (M))_		VDWLTEKM(1)		VDWLTEKM(110)	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.25244140625	2	519.252243	1036.48993	0.059867	3.1086E-05	-0.14159	-7.3521E-05	-0.081723	-4.2435E-05	519.2520615634199	36.588	0.3774	36.588	36.447	36.824	0					20	10	3	0	0	0	0.24681	1	13804	13804		107.01	27.295	1	448480			45600	4457;5432;5192	30171	30292	46186	46186		184			-0.02685298419692117
VDWLTEKM	8	Oxidation (M)	_VDWLTEKM(Oxidation (M))_		VDWLTEKM(1)		VDWLTEKM(58)	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2530517578125	2	519.252243	1036.48993	0.18292	9.498E-05	2.2311	0.0011585	2.414	0.0012535	519.2532101254362	36.355	0.28014	36.355	36.296	36.576	0					27	15	3	0	0	0	0.51931	1	12319	12319		58.23	17.452	1	141470			45601	4457;5432;5192	30171	30292	46187	46187		184			-0.02685298419692117
VDWLTEKM	8	Oxidation (M)	_VDWLTEKM(Oxidation (M))_		VDWLTEKM(1)		VDWLTEKM(130)	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2527465820312	2	519.252243	1036.48993	1.6293	0.00084601	0.78266	0.0004064	2.4119	0.0012524	519.2526039304058	36.569	0.74699	36.569	36.42	37.167	0					46	22	4	0	0	0	0.22502	1	14240	14240		131.03	31.656	1	756930			45602	4457;5432;5192	30171	30292	46188	46188		184			-0.02685298419692117
VDWLTEKM	8	Unmodified	_VDWLTEKM_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2542419433594	2	511.254785	1020.49502	-0.0031987	-1.6353E-06	-0.21784	-0.00011137	-0.22104	-0.00011301	511.2547047475991	44.276	0.18736	44.276	44.201	44.389	0					17	11	2	0	0	0	0.37144	1	16612	16612		74.255	26.339	1	102990			45603	4457;5432;5192	30171	30293	46189	46189					-0.014409945570719174
VDWLTEKM	8	Unmodified	_VDWLTEKM_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.25469970703125	2	511.254785	1020.49502	-0.38339	-0.00019601	0.90821	0.00046433	0.52482	0.00026832	511.2551418896527	44.082	0.11906	44.082	43.992	44.111	0					12	7	2	0	0	0	0.65148	1	14342	14342		40.778	3.6191	1	37289			45604	4457;5432;5192	30171	30293	46190	46190					-0.014409945570719174
VDWQIRQV	8	Unmodified	_VDWQIRQV_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2843627929688	2	522.285266	1042.55598	0.81677	0.00042658	-0.69515	-0.00036307	0.12162	6.3518E-05	522.2846175296019	38.702	0.082596	38.702	38.661	38.743	0					6	4	2	0	0	0	0.6088	1	12615	12615		47.657	3.5405	1	79959			45605	3478	30172	30294	46191	46191					0.03640278537386621
VDWQIRQV	8	Unmodified	_VDWQIRQV_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2857666015625	2	522.285266	1042.55598	0.083814	4.3775E-05	3.1824	0.0016621	3.2662	0.0017059	522.286905540069	39.036	0.44986	39.036	38.863	39.313	0					36	16	4	0	0	0	0.46013	1	14838	14838		64.207	0	1	428170			45606	3478	30172	30294	46192	46192					0.03640278537386621
VDWQIRQV	8	Unmodified	_VDWQIRQV_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.2871704101562	2	522.285266	1042.55598	-1.3083	-0.00068331	3.2266	0.0016852	1.9183	0.0010019	522.2871419718147	38.788	0.086967	38.788	38.729	38.816	0					6	4	2	0	0	0	0.28427	1	13855	13855		87.754	13.78	1	48713			45607	3478	30172	30294	46193	46193					0.03640278537386621
VDWQIRQV	8	Unmodified	_VDWQIRQV_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2853393554688	2	522.285266	1042.55598	3.3985	0.001775	-0.8517	-0.00044483	2.5468	0.0013301	522.2847443341981	38.962	0.90284	38.962	38.61	39.513	0					26	19	2	0	0	0	0.25987	1	15367	15367		95.815	13.51	1	936870			45608	3478	30172	30294	46194	46194					0.03640278537386621
VDWYQESV	8	Unmodified	_VDWYQESV_					0	0	0		ENST00000547804.1_1_12:30952917-30954651:+|nuORF	ENST00000547804.1_1_12:30952917-30954651:+|nuORF	ENST00000547804.1_1_12:30952917-30954651:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.233154296875	2	513.232364	1024.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.376	1	35.376	34.876	35.876	0								0	0	0	1.7419	1	13262	13262		64.207	3.2353	1				45609	10593	30173	30295	46195	46195					-0.06107102098769701
VDWYYQMK	8	Oxidation (M)	_VDWYYQM(Oxidation (M))K_		VDWYYQM(1)K		VDWYYQM(56)K	0	0	1			REV__nc|ENSG00000142733|O95382-2|MAP3K6	REV__nc|ENSG00000142733|O95382-2|MAP3K6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.755615234375	2	574.757692	1147.50083	-1.5194	-0.00087329	-3.9379	-0.0022633	-5.4573	-0.0031366	574.755943072692	27.787	0.21915	27.787	27.688	27.907	0					10	5	3	0	0	0	0.54629	1	9145	9145		55.504	9.5523	1	51361	+		45610	15159	30174	30296	46196	46196		576			-0.06701896045410649
VDYLKVKGL	9	Unmodified	_VDYLKVKGL_					0	0	0		ENST00000560936.2_1_15:60688058-60688154:-|nuORF	ENST00000560936.2_1_15:60688058-60688154:-|nuORF	ENST00000560936.2_1_15:60688058-60688154:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.8167114257812	2	517.815867	1033.61718	0.4104	0.00021251	-0.11139	-5.7681E-05	0.299	0.00015483	517.8158143523267	36.123	0.29159	36.123	35.976	36.267	0					20	14	2	0	0	0	0.47038	1	11872	11872		35.618	2.8059	1	122100			45611	10697	30175	30297	46197	46197					0.10171790516801593
VDYWVKAF	8	Unmodified	_VDYWVKAF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.265380859375	2	514.26601	1026.51747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.548	1	47.548	47.048	48.048	0								0	0	0	1.7419	1	18972	18972		82.305	39.831	1				45612	8070	30176	30298	46198	46198					0.005269729028668735
VEAEGIRPGP	10	Unmodified	_VEAEGIRPGP_					0	0	0		ENST00000361545.9_1_7:73818191-73818509:+|nuORF	ENST00000361545.9_1_7:73818191-73818509:+|nuORF	ENST00000361545.9_1_7:73818191-73818509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.77490234375	2	512.774731	1023.53491	1.2196	0.00062539	-0.82665	-0.00042388	0.39298	0.00020151	512.7742155643714	29.484	0.29003	29.484	29.363	29.653	0					17	9	3	0	0	0	0.4287	1	9309	9309		58.782	0	1	347550			45613	8876	30177	30299	46199	46199					0.02408268437852712
VEAEKQAAL	9	Unmodified	_VEAEKQAAL_					0	0	0		PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant;ENSG00000143850|ENST00000272203|PLEKHA6	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7635498046875	2	479.763832	957.513111	0.48215	0.00023132	-0.86904	-0.00041693	-0.38689	-0.00018562	479.76350341199316	22.39	0.32269	22.39	22.209	22.531	0					15	7	4	0	0	0	0.070005	1	7275	7275		88.177	18.549	1	1342400			45614	4585	30178	30300	46200	46200					0.032654636892857525
VEAEKQAAL	9	Unmodified	_VEAEKQAAL_					0	0	0		PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant;ENSG00000143850|ENST00000272203|PLEKHA6	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7634582519531	2	479.763832	957.513111	-0.11283	-5.4132E-05	-0.68077	-0.00032661	-0.7936	-0.00038074	479.76343770240265	22.277	0.16338	22.277	22.22	22.384	0					7	3	3	0	0	0	0.10506	1	7526	7526		78.264	0	1	900530			45615	4585	30178	30300	46201	46201					0.032654636892857525
VEAEKQAAL	9	Unmodified	_VEAEKQAAL_					0	0	0		PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant;ENSG00000143850|ENST00000272203|PLEKHA6	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7636413574219	2	479.763832	957.513111	0.034004	1.6314E-05	-0.40873	-0.00019609	-0.37472	-0.00017978	479.76343220477486	22.16	0.14784	22.16	22.085	22.233	0					5	3	2	0	0	0	0.07136	1	6552	6552		87.696	5.4559	1	79473			45616	4585	30178	30300	46202	46202					0.032654636892857525
VEAEKQAAL	9	Unmodified	_VEAEKQAAL_					0	0	0		PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant;ENSG00000143850|ENST00000272203|PLEKHA6	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.76348876953125	2	479.763832	957.513111	-0.65313	-0.00031335	0.10912	5.2354E-05	-0.54401	-0.000261	479.7637830770415	22.295	0.26528	22.295	22.19	22.455	0					14	5	3	0	0	0	0.04067	1	7385	7385		98.582	0	1	1352000			45617	4585	30178	30300	46203	46203					0.032654636892857525
VEAEPSVP	8	Unmodified	_VEAEPSVP_					0	0	0		ENST00000348354.6_1_21:18981451-18985174:-|nuORF	ENST00000348354.6_1_21:18981451-18985174:-|nuORF	ENST00000348354.6_1_21:18981451-18985174:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.2106018066406	2	414.210901	826.407249	1.0267	0.00042525	-1.7803	-0.00073742	-0.75363	-0.00031216	414.21013075257554	31.563	0.645	31.563	31.216	31.861	0					18	14	2	0	0	0	0.57802	1	11928	11928		52.299	5.5327	1	556030			45618	8767	30179	30301	46204	46204					-0.01289872156189631
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2181701660156	2	438.218203	874.421853	0.25669	0.00011249	-0.045163	-1.9791E-05	0.21153	9.2694E-05	438.21827991932133	36.303	0.25436	36.303	36.18	36.434	0					28	13	3	0	0	0	0.07136	1	11880	11880		87.696	27.578	1	190970			45619	6049;6450	30180	30302	46205	46205					-0.02038123279703541
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	438.218505859375	2	438.218203	874.421853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.592	1	36.592	36.092	37.092	0								0	0	0	0.011424	1	13813	13813		108.09	31.241	1				45620	6049;6450	30180	30302	46206	46206					-0.02038123279703541
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.7195739746094	2	438.218203	874.421853	-0.39268	-0.00017208	-0.084335	-3.6957E-05	-0.47702	-0.00020904	438.2182406582172	36.575	0.33255	36.575	36.428	36.76	0					22	9	3	0	0	0	0.1424	1	14221	14221		69.628	7.5202	1	806900			45621	6049;6450	30180	30302	46207	46207					-0.02038123279703541
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.2178649902344	2	438.218203	874.421853	0.67946	0.00029775	-1.2448	-0.00054549	-0.56534	-0.00024774	438.21778531057663	36.569	0.25948	36.569	36.455	36.714	0					17	7	3	0	0	0	0.025517	1	14242	14242		113.41	22.635	1	389990			45622	6049;6450	30180	30302	46208	46208					-0.02038123279703541
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2181701660156	2	438.218203	874.421853	0.3093	0.00013554	-0.25986	-0.00011388	0.049445	2.1668E-05	438.21809245357474	36.325	0.24446	36.325	36.231	36.475	0					23	10	3	0	0	0	0.19605	1	12980	12980		62.107	12.083	1	203890			45623	6049;6450	30180	30302	46209	46209					-0.02038123279703541
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2182922363281	2	438.218203	874.421853	-0.61224	-0.0002683	0.42046	0.00018425	-0.19178	-8.4043E-05	438.21837544764855	36.318	0.32082	36.318	36.222	36.543	0					25	14	3	0	0	0	0.034359	1	12987	12987		104.75	27.9	1	216250			45624	6049;6450	30180	30302	46210	46210					-0.02038123279703541
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.21807861328125	2	438.218203	874.421853	-0.57405	-0.00025156	-0.13697	-6.0024E-05	-0.71102	-0.00031158	438.2182197207348	36.487	0.41589	36.487	36.379	36.795	0					21	8	3	0	0	0	0.0073253	1	14170	14170		148.04	18.36	1	1785200			45625	6049;6450	30180	30302	46211	46211					-0.02038123279703541
VEAGGMQAL	9	Unmodified	_VEAGGMQAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.2179870605469	2	438.218203	874.421853	0.68449	0.00029995	-1.6331	-0.00071565	-0.9486	-0.00041569	438.2176561192845	36.516	0.51751	36.516	36.362	36.88	0					24	10	4	0	0	0	0.019882	1	14187	14187		122.18	28.17	1	1183000			45626	6049;6450	30180	30302	46212	46212					-0.02038123279703541
VEAGGMQAL	9	Oxidation (M)	_VEAGGM(Oxidation (M))QAL_		VEAGGM(1)QAL		VEAGGM(60)QAL	0	0	1		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	446.21551513671875	2	446.21566	890.416767	0.60247	0.00026883	-1.6952	-0.00075644	-1.0928	-0.00048761	446.2150361409559	27.016	0.29409	27.016	26.927	27.221	0					15	7	3	0	0	0	0.21263	1	9401	9401		60.118	6.7668	1	193230			45627	6049;6450	30180	30303	46213	46213		249			-0.03282427142312372
VEAGHTATL	9	Unmodified	_VEAGHTATL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.7349853515625	2	449.735074	897.455596	-0.47219	-0.00021236	0.13537	6.088E-05	-0.33682	-0.00015148	449.7351993490106	22.423	0.19297	22.423	22.323	22.516	0					8	4	3	0	0	0	0.030949	1	7296	7296		108.09	31.313	1	604860			45628	4513	30181	30304	46214	46214					0.0027662148370382056
VEAGHTATL	9	Unmodified	_VEAGHTATL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.7347106933594	2	449.735074	897.455596	-1.1832	-0.00053215	0.55691	0.00025046	-0.62633	-0.00028168	449.7351164778222	22.135	0.10566	22.135	22.071	22.176	0					6	3	2	0	0	0	0.13519	1	6465	6465		71.296	0	1	104880			45629	4513	30181	30304	46215	46215					0.0027662148370382056
VEAGLQIPA	9	Unmodified	_VEAGLQIPA_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;ENST00000562118.1_1_16:68857288-68867399:+|nuORF	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.25537109375	2	449.255643	896.496732	-0.39637	-0.00017807	-0.66122	-0.00029706	-1.0576	-0.00047513	449.2553593380074	41.334	0.26593	41.334	41.24	41.506	0					11	6	3	0	0	0	0.33044	1	16444	16444		47.657	3.5405	1	219440			45630	1185	30182	30305	46216	46216					0.044343825231862866
VEAHPPRR	8	Unmodified	_VEAHPPRR_					0	0	0		ENST00000311161.11_1_11:66136954-66139516:-|nuORF	ENST00000311161.11_1_11:66136954-66139516:-|nuORF	ENST00000311161.11_1_11:66136954-66139516:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.270263671875	2	481.26995	960.525347	2.3527	0.0011323	-0.30608	-0.00014731	2.0466	0.00098499	481.26976113291045	38.966	0.48072	38.966	38.763	39.243	0					24	10	4	0	0	0	0.5676	1	15327	15327		53.351	7.3995	1	908090			45631	8555	30183	30306	46217	46217					0.043505449429858345
VEAIGLLGGQ	10	Unmodified	_VEAIGLLGGQ_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.K673T|1|0.17|ENSG00000162607|chr1:62450641-62450641|A/C|missense_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7724609375	2	478.7742	955.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.545	1	32.545	32.045	33.045	0								0	0	0	0.39665	1	10526	10526		31.53	0	1				45632	5476	30184	30307	46218	46218					0.05430054068960999
VEAKAQQLQ	9	Unmodified	_VEAKAQQLQ_					0	0	0		ENST00000475975.5_1_22:30767625-30771497:+|nuORF;ENSG00000187860|ENST00000338306|CCDC157	ENST00000475975.5_1_22:30767625-30771497:+|nuORF	ENST00000475975.5_1_22:30767625-30771497:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.78265380859375	2	507.782556	1013.55056	1.1237	0.00057061	-1.2682	-0.00064395	-0.14443	-7.3338E-05	507.78197832461706	20.621	0.21943	20.621	20.562	20.781	0					5	4	2	0	0	0	0.076532	1	6724	6724		85.862	3.1113	1	779840			45633	7223	30185	30308	46219	46219					0.04432554954905754
VEALGLVR	8	Unmodified	_VEALGLVR_					0	0	0			REV__nc|ENSG00000123342|Q99542-4|MMP19	REV__nc|ENSG00000123342|Q99542-4|MMP19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.7660217285156	2	428.766178	855.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.137	1	37.137	36.637	37.637	0								0	0	0	1.7419	1	14058	14058		73.975	22.639	1		+		45634	14358	30186	30309	46220	46220					0.084263926227095
VEALIHAI	8	Unmodified	_VEALIHAI_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.26080322265625	2	433.260728	864.506903	0.14001	6.0659E-05	0.025733	1.1149E-05	0.16574	7.1808E-05	433.26083377651497	39.283	0.19332	39.283	39.233	39.426	0					10	6	2	0	0	0	0.24777	1	14949	14949		105.27	14.492	1	118690			45635	6450	30187	30310	46221	46221					0.06922990248415317
VEALIHAI	8	Unmodified	_VEALIHAI_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.2613830566406	2	433.260728	864.506903	3.2378	0.0014028	-2.8157	-0.0012199	0.4221	0.00018288	433.25954977902234	39.054	0.13463	39.054	38.979	39.113	0					10	7	2	0	0	0	0.6282	1	13145	13145		44.531	0	1	54427			45636	6450	30187	30310	46222	46222					0.06922990248415317
VEALIHAI	8	Unmodified	_VEALIHAI_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.2604675292969	2	433.260728	864.506903	-0.46271	-0.00020047	0.3161	0.00013696	-0.1466	-6.3517E-05	433.2608220932941	39.26	0.22246	39.26	39.196	39.418	0					14	7	2	0	0	0	0.29779	1	15431	15431		83.287	8.7706	1	243800			45637	6450	30187	30310	46223	46223					0.06922990248415317
VEALIHAI	8	Unmodified	_VEALIHAI_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.2608337402344	2	433.260728	864.506903	-0.49664	-0.00021517	-0.3212	-0.00013916	-0.81784	-0.00035434	433.26061858987714	39.235	0.19302	39.235	39.124	39.317	0					8	4	2	0	0	0	0.55361	1	15494	15494		54.765	7.9982	1	41838			45638	6450	30187	30310	46224	46224					0.06922990248415317
VEAPMPKL	8	Unmodified	_VEAPMPKL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.74951171875	2	442.749139	883.483725	-0.10683	-4.7301E-05	0.59112	0.00026172	0.48429	0.00021442	442.7493923285476	35.569	0.53757	35.569	35.317	35.855	0					20	14	2	0	0	0	0.28427	1	13315	13315		87.754	34.403	1	123100			45639	2425	30188	30311	46225	46225					0.037322281394494894
VEAPMPKL	8	Unmodified	_VEAPMPKL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.749267578125	2	442.749139	883.483725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.349	1	35.349	34.849	35.849	0								0	0	0	1.7419	1	11958	11958		60.972	0.67798	1				45640	2425	30188	30311	46226	46226					0.037322281394494894
VEAPMPKL	8	Unmodified	_VEAPMPKL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.74896240234375	2	442.749139	883.483725	-0.26157	-0.00011581	0.44287	0.00019608	0.1813	8.027E-05	442.74931587592465	35.58	0.58659	35.58	35.189	35.775	0					32	16	3	0	0	0	0.51384	2	13707	13707;13873		58.782	14.665	1	301670			45641	2425	30188	30311	46227;46228	46227					0.037322281394494894
VEAQKAQQL	9	Unmodified	_VEAQKAQQL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.78240966796875	2	507.782556	1013.55056	-0.6146	-0.00031208	-0.37195	-0.00018887	-0.98655	-0.00050095	507.78236997329617	20.43	0.11646	20.43	20.359	20.475	0					5	3	2	0	0	0	0.095583	1	5703	5703		80.455	12.961	1	75744			45642	1776	30189	30312	46229	46229					0.04432554954905754
VEAVEQNTL	9	Unmodified	_VEAVEQNTL_					0	0	0		ENST00000319041.6_1_1:26607416-26607611:+|nuORF;ENSG00000142669|ENST00000270792|SH3BGRL3	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7590026855469	2	501.758746	1001.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.485	1	32.485	31.985	32.985	0								0	0	0	0.11963	1	11931	11931		66.962	12.186	1				45643	4507	30190	30313	46230	46230					0.0022485596406340846
VEAVEQNTL	9	Unmodified	_VEAVEQNTL_					0	0	0		ENST00000319041.6_1_1:26607416-26607611:+|nuORF;ENSG00000142669|ENST00000270792|SH3BGRL3	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.75830078125	2	501.758746	1001.50294	-0.95081	-0.00047708	1.0828	0.00054333	0.13203	6.6249E-05	501.75889543719205	32.274	0.25603	32.274	32.161	32.417	0					15	11	2	0	0	0	0.076532	1	10747	10747		85.862	22.556	1	187170			45644	4507	30190	30313	46231	46231					0.0022485596406340846
VEAVEQNTL	9	Unmodified	_VEAVEQNTL_					0	0	0		ENST00000319041.6_1_1:26607416-26607611:+|nuORF;ENSG00000142669|ENST00000270792|SH3BGRL3	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.7585754394531	2	501.758746	1001.50294	0.95588	0.00047962	-0.91962	-0.00046143	0.036263	1.8195E-05	501.7579834997303	32.453	0.3289	32.453	32.359	32.688	0					20	8	4	0	0	0	0.032383	1	12348	12348		106.68	37.055	1	837210			45645	4507	30190	30313	46232	46232					0.0022485596406340846
VEAVEQNTL	9	Unmodified	_VEAVEQNTL_					0	0	0		ENST00000319041.6_1_1:26607416-26607611:+|nuORF;ENSG00000142669|ENST00000270792|SH3BGRL3	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENST00000319041.6_1_1:26607416-26607611:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7588806152344	2	501.758746	1001.50294	1.1321	0.00056804	-0.42257	-0.00021203	0.70953	0.00035601	501.75809187070934	32.464	0.36637	32.464	32.355	32.721	0					16	7	3	0	0	0	0.022525	1	12233	12233		117.81	40.493	1	718140			45646	4507	30190	30313	46233	46233					0.0022485596406340846
VEAVSDPDHA	10	Unmodified	_VEAVSDPDHA_					0	0	0			REV__ENSG00000138002|ENST00000260570|IFT172	REV__ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.2381591796875	2	520.238178	1038.4618	0.33393	0.00017372	0.097092	5.0511E-05	0.43102	0.00022423	520.2380331821788	24.731	0.20965	24.731	24.628	24.837	0					10	4	3	0	0	0	0.51121	1	8581	8581		44.117	6.3053	1	353010	+		45647	14951	30191	30314	46234	46234					-0.05588905075433104
VEAVSGAAAAL	11	Unmodified	_VEAVSGAAAAL_					0	0	0		ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7637634277344	2	479.763832	957.513111	-1.4039	-0.00067356	0.8001	0.00038386	-0.60384	-0.0002897	479.76441550313314	22.103	0.25632	22.103	21.949	22.206	0					12	8	3	0	0	0	0.22009	1	6461	6461		71.877	11.759	1	178570			45648	8546	30192	30315	46235	46235					0.032654636892857525
VEAVSGAAAAL	11	Unmodified	_VEAVSGAAAAL_					0	0	0		ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.76348876953125	2	479.763832	957.513111	-0.30972	-0.00014859	-0.10944	-5.2505E-05	-0.41916	-0.0002011	479.76381150237114	22.162	0.18495	22.162	22.074	22.259	0					7	4	2	0	0	0	0.097261	1	6563	6563		90.37	12.106	1	185570			45649	8546	30192	30315	46236	46236					0.032654636892857525
VEDAIHLQN	9	Unmodified	_VEDAIHLQN_					0	0	0			REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant	REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.76513671875	2	519.764363	1037.51417	3.361	0.001747	-2.5028	-0.0013009	0.85821	0.00044606	519.7631451964539	27.935	0.16381	27.935	27.829	27.993	0					6	3	2	0	0	0	0.17854	1	10070	10070		64.207	5.961	1	1393200	+		45650	12637	30193	30316	46237	46237					-0.0030832194179311045
VEDDARGTVVL	11	Unmodified	_VEDDARGTVVL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	587.3091430664062	2	587.309135	1172.60372	0.12135	7.1273E-05	0.54679	0.00032114	0.66815	0.00039241	587.3093085535718	33.276	0.24636	33.276	33.21	33.456	0					13	6	3	0	0	0	0.23242	1	12290	12290		70.399	26.021	1	226370			45651	4338	30194	30317	46238	46238					0.02431887946909228
VEDFCNNFR	9	Unmodified	_VEDFCNNFR_					0	0	0		ENSG00000183340|ENST00000332349|JRKL;JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant;JRKL|p.D161Y|1|0.27|ENSG00000183340|chr11:96391130-96391130|G/T|missense_variant	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.2470703125	2	572.248023	1142.48149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.131	1	15.131	14.631	15.631	0								0	0	0	0.38404	1	3231	3231		15.642	0.97771	1				45652	6954	30195	30318	46239	46239					-0.084048523363208
VEDGGHGVEG	10	Unmodified	_VEDGGHGVEG_					0	0	0		ENST00000587947.5_1_19:38880764-38880967:+|nuORF	ENST00000587947.5_1_19:38880764-38880967:+|nuORF	ENST00000587947.5_1_19:38880764-38880967:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.20892333984375	2	478.209421	954.404288	-0.059835	-2.8614E-05	-0.72627	-0.00034731	-0.78611	-0.00037593	478.2092187408779	17.009	0.12085	17.009	16.952	17.073	0					7	4	2	0	0	0	0.54197	1	3972	3972		40.778	7.2626	1	97740			45653	10919	30196	30319	46240	46240					-0.07473747280982934
VEDGVLLGAV	10	Unmodified	_VEDGVLLGAV_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.271484375	2	486.274032	970.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.877	1	33.877	33.377	34.377	0								0	0	0	0.29716	1	11396	11396		51.335	1.8939	1				45654	4197	30197	30320	46241	46241					0.04706634349099659
VEDLHNSI	8	Unmodified	_VEDLHNSI_					0	0	0			REV__nc|ENSG00000103852|Q5W5X9-2|TTC23	REV__nc|ENSG00000103852|Q5W5X9-2|TTC23	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7323913574219	2	463.732532	925.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.603	1	26.603	26.103	27.103	0								0	0	0	1.7419	1	8386	8386		38.806	0	1		+		45655	13699	30198	30321	46242	46242					-0.015196823789210612
VEDTVAKH	8	Unmodified	_VEDTVAKH_					0	0	0			REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF	REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.7347412109375	2	449.735074	897.455596	-2.6011	-0.0011698	2.3929	0.0010762	-0.20819	-9.3632E-05	449.736010662409	22.195	0.14729	22.195	22.099	22.246	0					5	3	2	0	0	0	0.67394	1	6582	6582		37.159	3.6435	1	152250	+		45656	15234	30199	30322	46243	46243					0.0027662148370382056
VEEKGVAQ	8	Unmodified	_VEEKGVAQ_					0	0	0			REV__ENST00000524662.1_1_11:67176460-67177396:+|nuORF	REV__ENST00000524662.1_1_11:67176460-67177396:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.22955322265625	2	430.229625	858.444697	-0.50424	-0.00021694	0.047864	2.0593E-05	-0.45638	-0.00019635	430.22968235211397	29.987	0.15998	29.987	29.916	30.076	0					7	3	3	0	0	0	0.32815	1	11166	11166		79.451	13.648	1	78203	+		45657	19980	30200	30323	46244	46244					0.009812191094397349
VEELDLHVL	9	Unmodified	_VEELDLHVL_					0	0	0			REV__ENST00000577922.5_1_17:62500880-62502245:-|nuORF	REV__ENST00000577922.5_1_17:62500880-62502245:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7926025390625	2	533.792589	1065.57063	1.1175	0.00059651	-1.3067	-0.00069749	-0.18918	-0.00010099	533.7919753413188	34.597	0.23816	34.597	34.49	34.728	0					11	6	3	0	0	0	0.1236	1	12258	12258		73.975	10.668	1	136890	+		45658	20431	30201	30324	46245	46245					0.04046305894848956
VEEQLIRY	8	Unmodified	_VEEQLIRY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2840576171875	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.93	1	32.93	32.43	33.43	0								0	0	0	1.7419	1	10679	10679		44.531	19.081	1				45659	699	30202	30325	46246	46246					0.03297439097673305
VEEQSSKF	8	Unmodified	_VEEQSSKF_					0	0	0			REV__ENSG00000169813|ENST00000682386|HNRNPF	REV__ENSG00000169813|ENST00000682386|HNRNPF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2326354980469	2	477.232364	952.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.385	1	36.385	35.885	36.885	0								0	0	0	1.7419	1	13025	13025		56.721	10.769	1		+		45660	16336	30203	30326	46247	46247					-0.027951020987529773
VEERNLLSV	9	Unmodified	_VEERNLLSV_					0	0	0		nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF	nc|ENSG00000108953|P62258-2|YWHAE	nc|ENSG00000108953|P62258-2|YWHAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.796142578125	2	529.795663	1057.57677	0.46001	0.00024371	0.53439	0.00028312	0.99439	0.00052682	529.7957564607134	37.166	0.10104	37.166	37.101	37.202	0					9	5	2	0	0	0	0.44593	1	12166	12166		37.812	0.65241	1	70104			45661	2558	30204	30327	46248	46248					0.05028824126384279
VEERNLLSV	9	Unmodified	_VEERNLLSV_					0	0	0		nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF	nc|ENSG00000108953|P62258-2|YWHAE	nc|ENSG00000108953|P62258-2|YWHAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7962646484375	2	529.795663	1057.57677	0.1144	6.061E-05	0.38855	0.00020585	0.50296	0.00026646	529.7961698854009	37.459	0.38651	37.459	37.349	37.736	0					25	11	4	0	0	0	0.18416	1	14190	14190		63.534	10.597	1	371170			45662	2558	30204	30327	46249	46249					0.05028824126384279
VEERNLLSV	9	Unmodified	_VEERNLLSV_					0	0	0		nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF	nc|ENSG00000108953|P62258-2|YWHAE	nc|ENSG00000108953|P62258-2|YWHAE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7958374023438	2	529.795663	1057.57677	0.2865	0.00015178	0.17551	9.2986E-05	0.46201	0.00024477	529.7956789893144	37.411	0.14166	37.411	37.348	37.49	0					8	4	2	0	0	0	0.56424	1	14639	14639		25.574	0	1	67686			45663	2558	30204	30327	46250	46250					0.05028824126384279
VEESTLAAEK	10	Unmodified	_VEESTLAAEK_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.7313842773438	2	538.777136	1075.53972	0.3009	0.00016212	3.8175	0.0020568	4.1184	0.0022189	538.7793648346722	15.221	0.25732	15.221	15.113	15.37	0					14	5	4	0	0	0	0.64162	1	4083	4083		29.17	3.596	1	2627700	+		45664	17352	30205	30328	46251	46251					0.004971077899426746
VEETCLSH	8	Unmodified	_VEETCLSH_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant;CCDC168|p.F3005Lfs*18|2|0.31|ENSG00000175820|chr13:102741682-102741682|A/-|frameshift_variant;CCDC168|p.T2792Dfs*27|1|0.25|ENSG00000175820|chr13:102742324-102742325|-/T|frameshift_variant;CCDC168|p.N2119Kfs*18|1|0.41|ENSG00000175820|chr13:102744340-102744341|-/T|frameshift_variant;CCDC168|p.M1116Nfs*6|1|0.25|ENSG00000175820|chr13:102747350-102747351|-/T|frameshift_variant;CCDC168|p.I1655Nfs*8|1|0.07|ENSG00000175820|chr13:102745733-102745734|-/AACTTAAAACAAT|frameshift_variant;CCDC168|p.N1192Tfs*3|1|0.1|ENSG00000175820|chr13:102747122-102747122|T/-|frameshift_variant;CCDC168|p.M1116Wfs*8|1|0.14|ENSG00000175820|chr13:102747351-102747351|T/-|frameshift_variant;CCDC168|p.L758Wfs*27|1|0.11|ENSG00000175820|chr13:102748424-102748424|A/-|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.20404052734375	2	459.205292	916.396032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.082	1	50.082	49.582	50.582	0								0	0	0	1.7419	1	18832	18832		30.504	5.0535	1				45665	6578	30206	30329	46252	46252					-0.06551017521962876
VEFNGKLLA	9	Unmodified	_VEFNGKLLA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7843933105469	2	495.784567	989.554582	0.72452	0.0003592	-0.66473	-0.00032956	0.059788	2.9642E-05	495.78418399541454	38.626	0.23436	38.626	38.532	38.766	0					25	8	4	0	0	0	0.11411	1	15164	15164		69.628	0	1	959420			45666	6043	30207	30330	46253	46253					0.0593864444861083
VEFNGKLLA	9	Unmodified	_VEFNGKLLA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.78466796875	2	495.784567	989.554582	0.10843	5.3758E-05	0.6652	0.00032979	0.77363	0.00038355	495.78478857612555	38.403	0.13304	38.403	38.338	38.471	0					10	6	2	0	0	0	0.082776	1	13734	13734		77.318	29.66	1	122700			45667	6043	30207	30330	46254	46254					0.0593864444861083
VEFPLRGL	8	Unmodified	_VEFPLRGL_					0	0	0		ENSG00000140455|ENST00000380324|USP3;nc|ENSG00000140455|Q9Y6I4-2|USP3;USP3|p.K438E|1|0.4|ENSG00000140455|chr15:63588798-63588798|A/G|missense_variant	ENSG00000140455|ENST00000380324|USP3	ENSG00000140455|ENST00000380324|USP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.77545166015625	2	465.774003	929.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.859	1	45.859	45.359	46.359	0								0	0	0	1.7419	1	18373	18373		57.811	0	1				45668	4385	30208	30331	46255	46255					0.06586679139775242
VEFSGKPA	8	Unmodified	_VEFSGKPA_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.7220458984375	2	417.721436	833.428318	0.46932	0.00019604	-0.089901	-3.7553E-05	0.37941	0.00015849	417.72134777899936	23.332	0.15192	23.332	23.234	23.386	0					5	3	2	0	0	0	0.59773	1	7701	7701		49.442	10.635	1	41977			45669	4768	30209	30332	46256	46256					0.004941379433375914
VEFVPGESLK	10	Unmodified	_VEFVPGESLK_					0	0	0		sp|P09713|US02_HCMVAUniqueshortUS2glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US2PE=1SV=1;sp|F5HE05|US02_HCMVMUniqueshortUS2glycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US2PE=2SV=1	sp|P09713|US02_HCMVAUniqueshortUS2glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US2PE=1SV=1	sp|P09713|US02_HCMVAUniqueshortUS2glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US2PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8699645996094	3	368.869368	1103.58628	1.0643	0.00039258	-0.16477	-6.0779E-05	0.89952	0.00033181	368.86936736278085	39.638	0.9626	39.638	39.156	40.118	0					58	33	2	0	0	0	0.65213	1	15492	15492		26.063	8.2302	1	75916			45670	22445	30210	30333	46257	46257					0.03862592411906007
VEGARFLKW	9	Unmodified	_VEGARFLKW_					0	0	0			REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.2090759277344	3	369.209948	1104.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.997	1	18.997	18.497	19.497	0								0	0	0	0.3693	1	5072	5072		19.997	1.7347	1		+		45671	19606	30211	30334	46258	46258					0.05989441951146546
VEGATNALAIL	11	Unmodified	_VEGATNALAIL_					0	0	0			REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.30615234375	2	536.305864	1070.59717	1.8379	0.00098566	-1.7646	-0.00094634	0.073309	3.9316E-05	536.3048659428966	49.583	0.36344	49.583	49.408	49.771	0					21	13	2	0	0	0	0.3224	1	18608	18608		60.118	1.3363	1	65288	+		45672	13044	30212	30335	46259	46259					0.06469994786198185
VEGFQFASVI	10	Unmodified	_VEGFQFASVI_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.7891845703125	2	548.787307	1095.56006	3.7977	0.0020841	-0.4877	-0.00026764	3.31	0.0018165	548.7871755197448	37.49	0.69942	37.49	37.187	37.886	0					39	14	4	0	0	0	0.21754	1	14651	14651		77.318	10.888	1	1268100	+		45673	13974	30213	30336	46260	46260					0.016103232404248047
VEGGMPKGLL	10	Oxidation (M)	_VEGGM(Oxidation (M))PKGLL_		VEGGM(1)PKGLL		VEGGM(78)PKGLL	0	0	1		ENST00000394936.7_1_10:73576084-73576285:-|nuORF	ENST00000394936.7_1_10:73576084-73576285:-|nuORF	ENST00000394936.7_1_10:73576084-73576285:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.77734375	2	508.775885	1015.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.044	1	23.044	22.544	23.544	0								0	0	0	0.10801	1	7755	7755		78.264	6.9681	1				45674	9183	30214	30337	46261	46261		371			0.030069808513189855
VEGVAKNNN	9	Unmodified	_VEGVAKNNN_					0	0	0		COBLL1|p.L945Cfs*12|1|0.35|ENSG00000082438|chr2:164694786-164694786|A/-|frameshift_variant;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	COBLL1|p.L945Cfs*12|1|0.35|ENSG00000082438|chr2:164694786-164694786|A/-|frameshift_variant	COBLL1|p.L945Cfs*12|1|0.35|ENSG00000082438|chr2:164694786-164694786|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7451477050781	2	472.743431	943.472308	2.4263	0.001147	0.87334	0.00041287	3.2997	0.0015599	472.74391787322435	34.269	0.26068	34.269	34.165	34.426	0					10	5	3	0	0	0	0.39215	1	13130	13130		42.396	3.59	1	474340			45675	585	30215	30338	46262	46262					-0.0016887763034674208
VEGWLMLL	8	Unmodified	_VEGWLMLL_					0	0	0			REV__ENSG00000113211|ENST00000231136|PCDHB6	REV__ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.88677978515625	2	480.764789	959.515025	-0.10898	-5.2394E-05	-0.13406	-6.4453E-05	-0.24304	-0.00011685	480.76471809789	15.983	0.16673	15.983	15.88	16.047	0					7	3	3	0	0	0	0.78146	1	4445	4445		23.037	0	1	565840	+		45676	14027	30216	30339	46263	46263					0.03364801173552223
VEHEKQRIL	9	Unmodified	_VEHEKQRIL_					0	0	0		ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	384.5556945800781	3	384.555895	1150.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.405	1	18.405	17.905	18.905	0								0	0	0	0.30504	1	4801	4801		34.173	5.0025	1				45677	7713	30217	30340	46264	46264					0.0765590814596635
VEHEKQRIL	9	Unmodified	_VEHEKQRIL_					0	0	0		ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3314208984375	2	576.330205	1150.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.432	1	18.432	17.932	18.932	0								0	0	0	0.039046	1	4812	4812		75.043	27.084	1				45678	7713	30217	30340	46265	46265					0.0765590814596635
VEHEKQRIL	9	Unmodified	_VEHEKQRIL_					0	0	0		ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.55584716796875	3	384.555895	1150.64586	0.24987	9.6089E-05	-1.084	-0.00041684	-0.83408	-0.00032075	384.5557218820749	18.652	0.16707	18.652	18.544	18.711	0					5	3	2	0	0	0	0.47473	1	5777	5777		35.152	3.5178	1	748100			45679	7713	30217	30340	46266	46266					0.0765590814596635
VEHEKQRIL	9	Unmodified	_VEHEKQRIL_					0	0	0		ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	384.555908203125	3	384.555895	1150.64586	-2.167	-0.00083333	2.6768	0.0010294	0.50981	0.00019605	384.55671112854736	18.495	0.11114	18.495	18.428	18.539	0					5	3	2	0	0	0	0.46194	1	4837	4837		36.447	2.5251	1	38948			45680	7713	30217	30340	46267	46267					0.0765590814596635
VEHEQREAA	9	Unmodified	_VEHEQREAA_					0	0	0		nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.7578735351562	2	534.757069	1067.49959	1.171	0.00062621	0.758	0.00040535	1.929	0.0010316	534.756905088955	13.242	0.10848	13.242	13.159	13.267	0					4	2	2	0	0	0	0.22837	1	3178	3178		58.23	17.452	1	42630			45681	6075	30218	30341	46268	46268					-0.031463940899584486
VEHETQKL	8	Unmodified	_VEHETQKL_					0	0	0		ENSG00000072786|ENST00000176763|STK10;ENST00000517360.1_1_5:171471888-171480055:-|nuORF;nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2613525390625	2	492.261456	982.50836	-0.16879	-8.309E-05	-0.67301	-0.0003313	-0.8418	-0.00041439	492.2619919779454	16.962	0.065945	16.962	16.93	16.996	0					4	2	2	0	0	0	0.41701	1	3963	3963		68.787	13.283	1	70456			45682	1501	30219	30342	46269	46269					0.016405795465175288
VEHETQKL	8	Unmodified	_VEHETQKL_					0	0	0		ENSG00000072786|ENST00000176763|STK10;ENST00000517360.1_1_5:171471888-171480055:-|nuORF;nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.26129150390625	2	492.261456	982.50836	0.79284	0.00039028	-2.899	-0.0014271	-2.1062	-0.0010368	492.260834530357	17.265	0.17276	17.265	17.185	17.357	0					11	4	3	0	0	0	0.35045	1	4850	4850		76.774	0	1	612050			45683	1501	30219	30342	46270	46270					0.016405795465175288
VEHETQKL	8	Unmodified	_VEHETQKL_					0	0	0		ENSG00000072786|ENST00000176763|STK10;ENST00000517360.1_1_5:171471888-171480055:-|nuORF;nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2612609863281	2	492.261456	982.50836	-0.057536	-2.8323E-05	0.094696	4.6615E-05	0.037159	1.8292E-05	492.2613283195592	17.225	0.11897	17.225	17.166	17.285	0					6	2	3	0	0	0	0.25102	1	5089	5089		99.375	5.3685	1	279370			45684	1501	30219	30342	46271	46271					0.016405795465175288
VEHGNLREL	9	Unmodified	_VEHGNLREL_					0	0	0		nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	356.1927185058594	3	356.192845	1065.55671	0.48822	0.0001739	-0.79321	-0.00028254	-0.305	-0.00010864	356.19249313495396	23.912	0.27125	23.912	23.819	24.09	0					11	6	3	0	0	0	0.27249	1	7991	7991		78.264	25.327	1	828020			45685	3887	30220	30343	46272	46272					0.026550731864290356
VEHHLFTLA	9	Unmodified	_VEHHLFTLA_					0	0	0		PTPN13|p.A614T|1|0.2|ENSG00000163629|chr4:86732748-86732748|G/A|missense_variant	PTPN13|p.A614T|1|0.2|ENSG00000163629|chr4:86732748-86732748|G/A|missense_variant	PTPN13|p.A614T|1|0.2|ENSG00000163629|chr4:86732748-86732748|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7860717773438	2	533.787641	1065.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.739	1	23.739	23.239	24.239	0								0	0	0	0.35507	1	7294	7294		24.203	1.1603	1				45686	11984	30221	30344	46273	46273					0.03057162680147485
VEHKVETF	8	Unmodified	_VEHKVETF_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.758056640625	2	494.758549	987.502546	-0.065785	-3.2548E-05	-0.51468	-0.00025464	-0.58046	-0.00028719	494.7581539842585	21.145	0.085976	21.145	21.087	21.173	0					4	2	2	0	0	0	0.65148	1	5778	5778		40.778	0	1	68217			45687	6329	30222	30345	46274	46274					0.008294810348502324
VEHKVETF	8	Unmodified	_VEHKVETF_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7587890625	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.533	1	21.533	21.033	22.033	0								0	0	0	1.7419	1	6857	6857		101.6	13.846	1				45688	6329	30222	30345	46275	46275					0.008294810348502324
VEHKVETF	8	Unmodified	_VEHKVETF_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.7592468261719	2	494.758549	987.502546	-1.2638	-0.00062529	0.8303	0.0004108	-0.43352	-0.00021449	494.758938549044	21.195	0.16644	21.195	21.124	21.291	0					7	5	2	0	0	0	0.29286	1	6042	6042		84.916	16.129	1	172610			45689	6329	30222	30345	46276	46276					0.008294810348502324
VEHKVETF	8	Unmodified	_VEHKVETF_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.75836181640625	2	494.758549	987.502546	0.68341	0.00033813	-0.40738	-0.00020155	0.27604	0.00013657	494.75827571185323	21.415	0.21857	21.415	21.307	21.526	0					10	4	3	0	0	0	0.32597	1	7110	7110		79.713	5.4575	1	977970			45690	6329	30222	30345	46277	46277					0.008294810348502324
VEHPAAKVL	9	Unmodified	_VEHPAAKVL_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2842712402344	2	482.284734	962.554916	-0.10327	-4.9803E-05	-0.70496	-0.00033999	-0.80822	-0.00038979	482.2844666457288	22.34	0.31418	22.34	22.17	22.485	0					11	6	2	0	0	0	0.30951	1	7556	7556		49.442	1.5259	1	129780			45691	3170	30223	30346	46278	46278					0.07214064168454115
VEIAAKNL	8	Unmodified	_VEIAAKNL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2576904296875	2	429.258185	856.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.507	1	29.507	29.007	30.007	0								0	0	0	1.7419	1	10933	10933		74.255	7.8258	1				45692	5411	30224	30347	46279	46279					0.06782686385793113
VEIAAKNL	8	Unmodified	_VEIAAKNL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2580261230469	2	429.258185	856.501818	0.1818	7.804E-05	-0.55561	-0.0002385	-0.3738	-0.00016046	429.25792278303345	29.278	0.14462	29.278	29.181	29.326	0					5	3	2	0	0	0	0.2678	1	9836	9836		93.195	13.744	1	109730			45693	5411	30224	30347	46280	46280					0.06782686385793113
VEIAAKNL	8	Unmodified	_VEIAAKNL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.258056640625	2	429.258185	856.501818	-0.43366	-0.00018615	0.16709	7.1725E-05	-0.26657	-0.00011443	429.25821187581806	29.416	0.20805	29.416	29.358	29.566	0					7	4	2	0	0	0	0.2498	1	10783	10783		101.6	13.846	1	571900			45694	5411	30224	30347	46281	46281					0.06782686385793113
VEIAAKNL	8	Unmodified	_VEIAAKNL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.2579040527344	2	429.258185	856.501818	1.0264	0.00044061	-1.4926	-0.0006407	-0.46614	-0.00020009	429.25750038861617	29.448	0.30783	29.448	29.341	29.648	0					14	6	3	0	0	0	0.2498	1	10801	10801		101.6	8.4052	1	1443500			45695	5411	30224	30347	46282	46282					0.06782686385793113
VEIAEKNVL	9	Unmodified	_VEIAEKNVL_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.79534912109375	2	507.795132	1013.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.32	1	34.32	33.82	34.82	0								0	0	0	0.16453	1	13219	13219		56.434	10.462	1				45696	11515	30225	30348	46283	46283					0.06946609757483202
VEIAEKNVL	9	Unmodified	_VEIAEKNVL_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7950134277344	2	507.795132	1013.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.29	1	34.29	33.79	34.79	0								0	0	0	0.095784	1	13129	13129		72.879	26.927	1				45697	11515	30225	30348	46284	46284					0.06946609757483202
VEIAKQSV	8	Unmodified	_VEIAKQSV_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF;nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.255859375	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.472	1	24.472	23.972	24.972	0								0	0	0	1.7419	1	7229	7229		65.465	8.7443	1				45698	2808	30226	30349	46285	46285					0.05538382523195651
VEIAKQSV	8	Unmodified	_VEIAKQSV_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF;nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2554016113281	2	437.255643	872.496732	0.62408	0.00027288	-1.5976	-0.00069857	-0.97355	-0.00042569	437.2550810769607	24.747	0.26294	24.747	24.573	24.836	0					10	6	3	0	0	0	0.42778	1	8382	8382		67.494	1.0644	1	1150200			45699	2808	30226	30349	46286	46286					0.05538382523195651
VEIAKQSV	8	Unmodified	_VEIAKQSV_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF;nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2552185058594	2	437.255643	872.496732	-0.40705	-0.00017799	-0.30745	-0.00013443	-0.7145	-0.00031242	437.2554361909387	24.72	0.31434	24.72	24.463	24.778	0					14	6	3	0	0	0	0.23138	1	8672	8672		132.76	22.638	1	1103700			45700	2808	30226	30349	46287	46287					0.05538382523195651
VEIAKQSV	8	Unmodified	_VEIAKQSV_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF;nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2554626464844	2	437.255643	872.496732	0.28942	0.00012655	-1.5074	-0.00065913	-1.218	-0.00053258	437.2550807647597	24.525	0.14022	24.525	24.439	24.579	0					8	3	3	0	0	0	0.51931	1	7652	7652		58.23	10.314	1	182640			45701	2808	30226	30349	46288	46288					0.05538382523195651
VEIAKQSV	8	Unmodified	_VEIAKQSV_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF;nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2554931640625	2	437.255643	872.496732	-0.56009	-0.0002449	-0.060073	-2.6267E-05	-0.62017	-0.00027117	437.255606629022	24.684	0.40392	24.684	24.48	24.884	0					16	8	3	0	0	0	0.51931	1	8556	8556		58.23	0.41864	1	1235000			45702	2808	30226	30349	46289	46289					0.05538382523195651
VEIAKVAI	8	Unmodified	_VEIAKVAI_					0	0	0		ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000511830.2_1_5:69390488-69422514:-|nuORF	ENST00000511830.2_1_5:69390488-69422514:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.770751953125	2	421.770929	841.527304	-0.33071	-0.00013949	0.19869	8.3804E-05	-0.13202	-5.5682E-05	421.77094900900784	38.667	0.26611	38.667	38.543	38.81	0					8	5	2	0	0	0	0.5535	1	15230	15230		54.776	3.4409	1	48395			45703	7982	30227	30350	46290	46290					0.10020160908231901
VEILQHVI	8	Unmodified	_VEILQHVI_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1;ENSG00000172201|ENST00000378700|ID4	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.786865234375	2	475.78711	949.559667	0.62422	0.00029699	-0.45785	-0.00021784	0.16637	7.9157E-05	475.78700385295923	42.764	0.26416	42.764	42.718	42.982	0					17	13	2	0	0	0	0.3049	1	16774	16774		82.241	10.945	1	337780			45704	3453	30228	30351	46291	46291					0.08286948311229025
VEILQHVI	8	Unmodified	_VEILQHVI_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1;ENSG00000172201|ENST00000378700|ID4	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7868957519531	2	475.78711	949.559667	0.75885	0.00036105	0.16133	7.6757E-05	0.92018	0.00043781	475.78750166725047	42.737	0.27478	42.737	42.662	42.937	0					15	8	3	0	0	0	0.28427	1	17087	17087		87.754	10.98	1	152030			45705	3453	30228	30351	46292	46292					0.08286948311229025
VEINKIIST	9	Unmodified	_VEINKIIST_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.80303955078125	2	508.802957	1015.59136	0.91452	0.00046531	-0.022121	-1.1255E-05	0.8924	0.00045406	508.8027830476745	36.327	0.14535	36.327	36.285	36.43	0					6	4	2	0	0	0	0.34452	1	13698	13698		46.457	3.5925	1	161300			45706	3350	30229	30352	46293	46293					0.08418896274520193
VEKAAAVSL	9	Unmodified	_VEKAAAVSL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2630920410156	2	444.263468	886.512382	-0.2929	-0.00013012	-0.26279	-0.00011675	-0.55568	-0.00024687	444.2632345699173	27.465	0.10456	27.465	27.395	27.499	0					6	3	2	0	0	0	0.090954	1	8458	8458		81.525	1.8124	1	135850			45707	5422	30230	30353	46294	46294					0.06458669040239329
VEKAAAVSL	9	Unmodified	_VEKAAAVSL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.26318359375	2	444.263468	886.512382	-0.37214	-0.00016533	-0.23418	-0.00010404	-0.60632	-0.00026937	444.263358101403	27.745	0.351	27.745	27.653	28.004	0					15	8	3	0	0	0	0.047855	1	9735	9735		96.034	16.583	1	689980			45708	5422	30230	30353	46295	46295					0.06458669040239329
VEKAGLISL	9	Unmodified	_VEKAGLISL_					0	0	0		nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000558761.5_1_15:50545740-50557820:-|nuORF	nc|ENSG00000140287|P19113-2|HDC	nc|ENSG00000140287|P19113-2|HDC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.28668212890625	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.331	1	39.331	38.831	39.831	0								0	0	0	0.13425	1	15535	15535		63.534	1.4264	1				45709	4376	30231	30354	46296	46296					0.09219528591370363
VEKEFEPLL	9	Unmodified	_VEKEFEPLL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.30322265625	2	552.30279	1102.59103	1.818	0.0010041	-0.93655	-0.00051726	0.88142	0.00048681	552.3023001543639	43.634	0.32117	43.634	43.492	43.813	0					20	9	3	0	0	0	0.28897	1	17441	17441		51.193	10.415	1	127190			45710	5919	30232	30355	46297	46297					0.043834765546762355
VEKEGIHVL	9	Unmodified	_VEKEGIHVL_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1;chr1:31911841-31915895|139|19.5|0.0|20.89|-|0|None,PTP4A2|1;ENST00000484483.1_1_1:32381486-32384666:-|nuORF;nc|ENSG00000184007|Q12974-2|PTP4A2;nc|ENSG00000184007|Q12974-4|PTP4A2;ENSG00000184007|ENST00000647444|PTP4A2	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.29541015625	2	512.295299	1022.57605	1.1882	0.00060869	-0.77553	-0.0003973	0.41264	0.00021139	512.2946451213173	27.403	0.15706	27.403	27.352	27.509	0					8	5	2	0	0	0	0.04067	1	8448	8448		82.241	15.811	1	55955			45711	2726	30233	30356	46298	46298					0.06566029477335178
VEKEGIHVL	9	Unmodified	_VEKEGIHVL_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1;chr1:31911841-31915895|139|19.5|0.0|20.89|-|0|None,PTP4A2|1;ENST00000484483.1_1_1:32381486-32384666:-|nuORF;nc|ENSG00000184007|Q12974-2|PTP4A2;nc|ENSG00000184007|Q12974-4|PTP4A2;ENSG00000184007|ENST00000647444|PTP4A2	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2959594726562	2	512.295299	1022.57605	1.0568	0.0005414	-0.28582	-0.00014643	0.771	0.00039498	512.2951586433215	27.667	0.22238	27.667	27.583	27.805	0					13	5	3	0	0	0	0.020674	1	9686	9686		93.195	16.421	1	546750			45712	2726	30233	30356	46299	46299					0.06566029477335178
VEKEGIHVL	9	Unmodified	_VEKEGIHVL_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1;chr1:31911841-31915895|139|19.5|0.0|20.89|-|0|None,PTP4A2|1;ENST00000484483.1_1_1:32381486-32384666:-|nuORF;nc|ENSG00000184007|Q12974-2|PTP4A2;nc|ENSG00000184007|Q12974-4|PTP4A2;ENSG00000184007|ENST00000647444|PTP4A2	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2957763671875	2	512.295299	1022.57605	0.50729	0.00025988	-0.57905	-0.00029664	-0.071756	-3.676E-05	512.2950133486047	27.674	0.16137	27.674	27.569	27.73	0					8	3	3	0	0	0	0.020674	1	10041	10041		93.195	32.224	1	189560			45713	2726	30233	30356	46300	46300					0.06566029477335178
VEKEGIHVL	9	Unmodified	_VEKEGIHVL_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1;chr1:31911841-31915895|139|19.5|0.0|20.89|-|0|None,PTP4A2|1;ENST00000484483.1_1_1:32381486-32384666:-|nuORF;nc|ENSG00000184007|Q12974-2|PTP4A2;nc|ENSG00000184007|Q12974-4|PTP4A2;ENSG00000184007|ENST00000647444|PTP4A2	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2968139648438	2	512.295299	1022.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.487	1	27.487	26.987	27.987	0								0	0	0	0.13425	1	8999	8999		39.253	7.723	1				45714	2726	30233	30356	46301	46301					0.06566029477335178
VEKEGIHVL	9	Unmodified	_VEKEGIHVL_					0	0	0		ENSG00000112245|ENST00000626021|PTP4A1;chr1:31911841-31915895|139|19.5|0.0|20.89|-|0|None,PTP4A2|1;ENST00000484483.1_1_1:32381486-32384666:-|nuORF;nc|ENSG00000184007|Q12974-2|PTP4A2;nc|ENSG00000184007|Q12974-4|PTP4A2;ENSG00000184007|ENST00000647444|PTP4A2	ENSG00000112245|ENST00000626021|PTP4A1	ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.29541015625	2	512.295299	1022.57605	0.055313	2.8337E-05	-0.051435	-2.635E-05	0.0038785	1.987E-06	512.2954112860226	27.62	0.27029	27.62	27.51	27.78	0					13	5	3	0	0	0	0.029571	1	9896	9896		82.75	23.969	1	656250			45715	2726	30233	30356	46302	46302					0.06566029477335178
VEKEMRVTL	9	Unmodified	_VEKEMRVTL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.8075561523438	2	552.807716	1103.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.495	1	28.495	27.995	28.995	0								0	0	0	0.31222	1	8907	8907		32.751	13.647	1				45716	7426	30234	30357	46303	46303					0.05322341288410826
VEKEMRVTL	9	Unmodified	_VEKEMRVTL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.8079833984375	2	552.807716	1103.60088	0.064454	3.5631E-05	0.36492	0.00020173	0.42938	0.00023736	552.8079584373793	28.754	0.11684	28.754	28.695	28.812	0					4	2	2	0	0	0	0.40353	1	10586	10586		41.427	7.2541	1	72476			45717	7426	30234	30357	46304	46304					0.05322341288410826
VEKETQEKM	9	Unmodified	_VEKETQEKM_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.2785034179688	2	561.278989	1120.54342	1.2768	0.00071666	-1.3883	-0.0007792	-0.11142	-6.254E-05	561.2782566240746	15.756	0.074606	15.756	15.705	15.78	0					6	3	2	0	0	0	0.18416	1	3476	3476		63.534	10.597	1	97855			45718	4125	30235	30358	46305	46305					-0.012025457078379986
VEKETQEKM	9	Unmodified	_VEKETQEKM_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.2794189453125	2	561.278989	1120.54342	0.47906	0.00026889	-0.2586	-0.00014515	0.22046	0.00012374	561.2792318216266	16.057	0.18327	16.057	15.966	16.149	0					12	4	4	0	0	0	0.054723	1	4284	4284		93.598	16.28	1	1095100			45719	4125	30235	30358	46306	46306					-0.012025457078379986
VEKETQEKM	9	Unmodified	_VEKETQEKM_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.280029296875	2	561.278989	1120.54342	-0.90852	-0.00050993	2.326	0.0013055	1.4175	0.00079561	561.2800807732369	15.811	0.12654	15.811	15.766	15.893	0					7	5	2	0	0	0	0.052435	1	3615	3615		94.409	44.873	1	124050			45720	4125	30235	30358	46307	46307					-0.012025457078379986
VEKETQEKM	9	Unmodified	_VEKETQEKM_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.2794799804688	2	561.278989	1120.54342	3.4702	0.0019477	-3.4902	-0.001959	-0.02008	-1.127E-05	561.2773906478194	15.971	0.16697	15.971	15.913	16.08	0					10	3	4	0	0	0	0.024312	1	4341	4341		114.86	29.697	1	878660			45721	4125	30235	30358	46308	46308					-0.012025457078379986
VEKGAATSV	9	Unmodified	_VEKGAATSV_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.2372741699219	2	431.23745	860.460347	-0.50629	-0.00021833	0.49921	0.00021528	-0.0070848	-3.0553E-06	431.23756614149744	17.732	0.20861	17.732	17.647	17.855	0					11	5	3	0	0	0	0.0097668	1	5044	5044		141.52	19.344	1	976580			45722	2692	30236	30359	46309	46309					0.02453505626488095
VEKGELPVL	9	Unmodified	_VEKGELPVL_					0	0	0			REV__nc|ENSG00000100678|P57103-3|SLC8A3	REV__nc|ENSG00000100678|P57103-3|SLC8A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2923889160156	2	492.292225	982.569897	0.79185	0.00038982	-1.2882	-0.00063416	-0.49633	-0.00024434	492.2917615553774	35.311	0.23669	35.311	35.192	35.429	0					12	6	3	0	0	0	0.33044	1	13210	13210		47.657	1.6851	1	192810	+		45723	13571	30237	30360	46310	46310					0.07791511245807214
VEKGFTPSL	9	Unmodified	_VEKGFTPSL_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000495539.5_1_10:114169305-114171667:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7700500488281	2	489.26875	976.522947	-0.10207	-4.9941E-05	-0.35821	-0.00017526	-0.46029	-0.0002252	489.26879846557694	34.612	0.15668	34.612	34.513	34.67	0					9	6	2	0	0	0	0.19891	1	11322	11322		46.457	0	1	65883			45724	7431	30238	30361	46311	46311					0.03374651694673503
VEKGFTPSL	9	Unmodified	_VEKGFTPSL_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000495539.5_1_10:114169305-114171667:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2685852050781	2	489.26875	976.522947	0.78306	0.00038313	-1.1592	-0.00056716	-0.37615	-0.00018404	489.26822663761664	34.915	0.35587	34.915	34.731	35.087	0					19	9	3	0	0	0	0.13907	1	13041	13041		72.879	0	1	349950			45725	7431	30238	30361	46312	46312					0.03374651694673503
VEKGFTPSL	9	Unmodified	_VEKGFTPSL_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000495539.5_1_10:114169305-114171667:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.2684326171875	2	489.26875	976.522947	-0.15999	-7.8279E-05	-0.96175	-0.00047055	-1.1217	-0.00054883	489.2685122883093	34.638	0.1277	34.638	34.568	34.696	0					5	3	2	0	0	0	0.21222	1	12296	12296		61.691	6.915	1	58591			45726	7431	30238	30361	46313	46313					0.03374651694673503
VEKGFTPSL	9	Unmodified	_VEKGFTPSL_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000495539.5_1_10:114169305-114171667:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2690124511719	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.846	1	34.846	34.346	35.346	0								0	0	0	0.02816	1	13397	13397		90.601	5.6853	1				45727	7431	30238	30361	46314	46314					0.03374651694673503
VEKGHFAEL	9	Unmodified	_VEKGHFAEL_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2717895507812	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.165	1	26.165	25.665	26.665	0								0	0	0	0.097963	1	8192	8192		56.434	0	1				45728	1821	30239	30362	46315	46315					0.015971699261854155
VEKGKKREQ	9	Unmodified	_VEKGKKREQ_					0	0	0		ENST00000525126.5_2_11:111428322-111431180:+|nuORF	ENST00000525126.5_2_11:111428322-111431180:+|nuORF	ENST00000525126.5_2_11:111428322-111431180:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.322509765625	2	551.32238	1100.63021	1.8168	0.0010016	-1.2079	-0.00066596	0.60884	0.00033567	551.3217215328802	22.278	0.2654	22.278	22.173	22.438	0					12	5	3	0	0	0	0.30841	1	7401	7401		49.536	3.0793	1	747720			45729	10355	30240	30363	46316	46316					0.08391621628902612
VEKHVVQSI	9	Unmodified	_VEKHVVQSI_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000402768.1_1_6:139935577-139935790:-|nuORF;ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.8016357421875	2	519.800749	1037.58694	0.6029	0.00031339	0.088815	4.6166E-05	0.69172	0.00035956	519.8009601629391	21.145	0.085976	21.145	21.087	21.173	0					4	2	2	0	0	0	0.14578	1	5776	5776		68.846	7.8742	1	90914			45730	2982	30241	30364	46317	46317					0.06965431851631365
VEKHVVQSI	9	Unmodified	_VEKHVVQSI_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000402768.1_1_6:139935577-139935790:-|nuORF;ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.8007202148438	2	519.800749	1037.58694	0.063648	3.3084E-05	0.54261	0.00028205	0.60625	0.00031513	519.8010021973432	21.47	0.23078	21.47	21.38	21.61	0					9	5	2	0	0	0	0.082776	1	6838	6838		83.647	18.182	1	740230			45731	2982	30241	30364	46318	46318					0.06965431851631365
VEKIDFDSV	9	Unmodified	_VEKIDFDSV_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2686767578125	2	526.268947	1050.52334	1.9967	0.0010508	-1.0488	-0.00055196	0.94783	0.00049881	526.2681229278255	39.081	0.19418	39.081	39.005	39.199	0					14	7	2	0	0	0	0.019258	1	14858	14858		123.21	43.496	1	125760			45732	6746	30242	30365	46319	46319					0.00010026623863268469
VEKKATGE	8	Unmodified	_VEKKATGE_					0	0	0		ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	431.2371520996094	2	431.23745	860.460347	-0.25071	-0.00010812	-0.037612	-1.622E-05	-0.28832	-0.00012433	431.2373400745795	17.386	0.14656	17.386	17.323	17.469	0					9	5	3	0	0	0	0.34592	1	4138	4138		77.318	6.5014	1	188240			45733	11095	30243	30366	46320	46320					0.024535056264767263
VEKKATGE	8	Unmodified	_VEKKATGE_					0	0	0		ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.2373352050781	2	431.23745	860.460347	2.5427	0.0010965	-2.2633	-0.00097601	0.27943	0.0001205	431.23632317591375	17.657	0.27043	17.657	17.547	17.817	0					8	5	2	0	0	0	0.50061	1	5150	5150		60.118	0.18749	1	1012100			45734	11095	30243	30366	46321	46321					0.024535056264767263
VEKKGEKLIL	10	Unmodified	_VEKKGEKLIL_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.8692016601562	2	578.868631	1155.72271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.897	1	22.897	22.397	23.397	0								0	0	0	0.17308	1	6546	6546		67.494	14.405	1				45735	3655	30244	30367	46322	46322					0.15107706642447738
VEKKGEKLIL	10	Unmodified	_VEKKGEKLIL_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	386.58258056640625	3	386.24818	1155.72271	-0.76884	-0.00029696	0.53555	0.00020686	-0.23328	-9.0104E-05	386.24842197640106	22.968	0.16938	22.968	22.896	23.066	0					11	5	3	0	0	0	0.70877	1	6828	6828		40.058	40.058	1	111950			45736	3655	30244	30367	46323	46323					0.15107706642447738
VEKKGEKLIL	10	Unmodified	_VEKKGEKLIL_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	386.2481994628906	3	386.24818	1155.72271	0.44436	0.00017163	-0.15171	-5.8598E-05	0.29265	0.00011304	386.24806896523677	23.187	0.26725	23.187	23.028	23.295	0					12	5	3	0	0	0	0.44601	1	7939	7939		81.525	23.279	1	652180			45737	3655	30244	30367	46324	46324					0.15107706642447738
VEKKGEKLIL	10	Unmodified	_VEKKGEKLIL_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.869140625	2	578.868631	1155.72271	-0.41058	-0.00023767	0.97757	0.00056588	0.56699	0.00032821	578.8694184882571	23.137	0.1173	23.137	23.078	23.195	0					4	2	2	0	0	0	0.45669	1	7941	7941		50.034	17.283	1	135760			45738	3655	30244	30367	46325	46325					0.15107706642447738
VEKKKEPSV	9	Unmodified	_VEKKKEPSV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.3087768554688	2	522.308406	1042.60226	1.5266	0.00079738	0.56464	0.00029492	2.0913	0.0010923	522.8100967514806	14.453	0.099419	14.453	14.389	14.489	0					8	5	2	0	0	0	0.11898	1	2976	2976		75.043	0	1	46198			45739	6017	30245	30368	46326	46326					0.08266298648823067
VEKKKEPSV	9	Unmodified	_VEKKKEPSV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.308837890625	2	522.308406	1042.60226	1.6129	0.00084244	-0.35708	-0.00018651	1.2558	0.00065593	522.3081618006901	14.781	0.48077	14.781	14.693	15.174	0					24	11	3	0	0	0	0.029571	1	3665	3665		109.44	27.198	1	513670			45740	6017	30245	30368	46327	46327					0.08266298648823067
VEKKKEPSV	9	Unmodified	_VEKKKEPSV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.3088989257812	2	522.308406	1042.60226	0.40514	0.00021161	-0.031716	-1.6566E-05	0.37343	0.00019504	522.3094014858727	14.445	0.12502	14.445	14.391	14.516	0					9	6	2	0	0	0	0.16806	1	3125	3125		65.465	0	1	43367			45741	6017	30245	30368	46328	46328					0.08266298648823067
VEKKKEPSV	9	Unmodified	_VEKKKEPSV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.3088989257812	2	522.308406	1042.60226	1.7866	0.00093317	-1.1549	-0.0006032	0.63175	0.00032997	522.3076440110146	14.711	0.51733	14.711	14.63	15.147	0					22	10	3	0	0	0	0.076532	1	3879	3879		85.862	12.983	1	405760			45742	6017	30245	30368	46329	46329					0.08266298648823067
VEKKKEPSV	9	Unmodified	_VEKKKEPSV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.309326171875	2	522.308406	1042.60226	1.0725	0.00056017	0.21169	0.00011057	1.2842	0.00067074	522.3086941841079	14.504	0.18699	14.504	14.452	14.639	0					12	8	2	0	0	0	0.12834	1	3081	3081		72.879	8.672	1	49481			45743	6017	30245	30368	46330	46330					0.08266298648823067
VEKKKEPSV	9	Unmodified	_VEKKKEPSV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.30859375	2	522.308406	1042.60226	1.6249	0.00084868	-0.52661	-0.00027505	1.0983	0.00057363	522.3079621077142	14.675	0.47085	14.675	14.592	15.063	0					20	9	3	0	0	0	0.047855	1	3704	3704		96.034	17.77	1	439230			45744	6017	30245	30368	46331	46331					0.08266298648823067
VEKKPLVAL	9	Unmodified	_VEKKPLVAL_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.82623291015625	2	498.826235	995.637917	-0.23111	-0.00011528	0.26138	0.00013039	0.030279	1.5104E-05	498.82638292546966	28.114	0.21449	28.114	27.993	28.208	0					12	5	3	0	0	0	0.35021	1	9909	9909		45.972	8.1607	1	273930			45745	7324	30246	30369	46332	46332					0.13992380896468148
VEKKPLVAL	9	Unmodified	_VEKKPLVAL_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.82586669921875	2	498.826235	995.637917	-0.67725	-0.00033783	0.59416	0.00029638	-0.083092	-4.1449E-05	498.82638475160576	28.079	0.14641	28.079	27.98	28.126	0					6	3	2	0	0	0	0.35021	1	10235	10235		45.972	0	1	145200			45746	7324	30246	30369	46333	46333					0.13992380896468148
VEKKSVAKL	9	Unmodified	_VEKKSVAKL_					0	0	0		nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;PSMA8|p.N213Kfs*3|1|0.21|ENSG00000154611|chr18:26179084-26179085|-/A|frameshift_variant;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	nc|ENSG00000101182|O14818-4|PSMA7	nc|ENSG00000101182|O14818-4|PSMA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.32080078125	2	501.321317	1000.62808	-0.044777	-2.2448E-05	-0.6096	-0.0003056	-0.65437	-0.00032805	501.32085342963	16.339	0.0959	16.339	16.286	16.382	0					10	4	3	0	0	0	0.43488	1	3695	3695		38.754	5.9412	1	124500			45747	2098	30247	30370	46334	46334					0.1277919289109377
VEKKSVAKL	9	Unmodified	_VEKKSVAKL_					0	0	0		nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;PSMA8|p.N213Kfs*3|1|0.21|ENSG00000154611|chr18:26179084-26179085|-/A|frameshift_variant;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	nc|ENSG00000101182|O14818-4|PSMA7	nc|ENSG00000101182|O14818-4|PSMA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5498962402344	3	334.54997	1000.62808	1.6225	0.00054281	-2.0055	-0.00067095	-0.38301	-0.00012814	334.5493626229367	16.591	0.21607	16.591	16.434	16.65	0					11	4	3	0	0	0	0.44593	1	4632	4632		61.691	6.915	1	1977900			45748	2098	30247	30370	46335	46335					0.1277919289109377
VEKLEQLI	8	Unmodified	_VEKLEQLI_					0	0	0		LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant;LRRK2|p.R1639Kfs*13|1|0.36|ENSG00000188906|chr12:40320067-40320068|-/A|frameshift_variant;LRRK2|p.R1639Gfs*15|1|0.59|ENSG00000188906|chr12:40320068-40320068|A/-|frameshift_variant;LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2924499511719	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.414	1	34.414	33.914	34.914	0								0	0	0	1.7419	1	11605	11605		39.253	0	1				45749	7284	30248	30371	46336	46336					0.08343511245811897
VEKLEQLI	8	Unmodified	_VEKLEQLI_					0	0	0		LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant;LRRK2|p.R1639Kfs*13|1|0.36|ENSG00000188906|chr12:40320067-40320068|-/A|frameshift_variant;LRRK2|p.R1639Gfs*15|1|0.59|ENSG00000188906|chr12:40320068-40320068|A/-|frameshift_variant;LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2933654785156	2	486.292225	970.569897	-0.23965	-0.00011654	0.22785	0.0001108	-0.011797	-5.7367E-06	486.2926011367494	34.331	0.24224	34.331	34.227	34.47	0					19	8	3	0	0	0	0.48092	1	12159	12159		62.107	0	1	65454			45750	7284	30248	30371	46337	46337					0.08343511245811897
VEKLGAYEL	9	Unmodified	_VEKLGAYEL_					0	0	0		ENSG00000196843|ENST00000357485|ARID5A;ARID5A|p.R213Gfs*55|1|0.21|ENSG00000196843|chr2:96551159-96551159|C/-|frameshift_variant;nc|ENSG00000196843|Q03989-5|ARID5A;ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENSG00000196843|ENST00000357485|ARID5A	ENSG00000196843|ENST00000357485|ARID5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.28192138671875	2	511.281857	1020.54916	1.0086	0.00051568	-1.5892	-0.00081252	-0.58057	-0.00029684	511.2812073513819	38.592	0.17764	38.592	38.493	38.671	0					12	7	3	0	0	0	0.3269	1	14666	14666		47.96	3.5823	1	122260			45751	7398	30249	30372	46338	46338					0.039709208661292905
VEKLGAYEL	9	Unmodified	_VEKLGAYEL_					0	0	0		ENSG00000196843|ENST00000357485|ARID5A;ARID5A|p.R213Gfs*55|1|0.21|ENSG00000196843|chr2:96551159-96551159|C/-|frameshift_variant;nc|ENSG00000196843|Q03989-5|ARID5A;ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENSG00000196843|ENST00000357485|ARID5A	ENSG00000196843|ENST00000357485|ARID5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2824401855469	2	511.281857	1020.54916	1.2216	0.00062458	-1.5431	-0.00078894	-0.32147	-0.00016436	511.2815122282081	38.554	0.17865	38.554	38.505	38.683	0					9	6	2	0	0	0	0.22837	1	15144	15144		58.23	3.4536	1	83497			45752	7398	30249	30372	46339	46339					0.039709208661292905
VEKLTKLVL	9	Unmodified	_VEKLTKLVL_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.23370361328125	3	348.23387	1041.67978	0.49961	0.00017398	-0.4642	-0.00016165	0.035406	1.233E-05	348.2337192648265	35.164	0.24457	35.164	35.061	35.305	0					9	6	2	0	0	0	0.55379	1	13183	13183		41.427	4.9799	1	150980			45753	2754	30250	30373	46340	46340					0.16060936584972296
VEKMNIFL	8	Unmodified	_VEKMNIFL_					0	0	0			REV__tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1	REV__tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2747497558594	2	497.275521	992.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.197	1	40.197	39.697	40.697	0								0	0	0	1.7419	1	15321	15321		47.657	0	1		+		45754	22102	30251	30374	46341	46341					0.039921862022538335
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2769775390625	2	512.277106	1022.53966	1.1923	0.00061078	0.054087	2.7708E-05	1.2464	0.00063848	512.2768898210635	20.71	0.2563	20.71	20.52	20.776	0					14	7	3	0	0	0	0.30951	1	5556	5556		49.442	3.4896	1	98595			45755	7537	30252	30375	46342	46342					0.029291525806115715
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.2771606445312	2	512.277106	1022.53966	1.0564	0.00054119	-1.5812	-0.00081004	-0.52481	-0.00026885	512.2765259018149	20.977	0.34764	20.977	20.799	21.147	0					19	8	4	0	0	0	0.085655	1	6589	6589		82.75	22.632	1	834890			45756	7537	30252	30375	46343	46343					0.029291525806115715
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	341.85369873046875	3	341.85383	1022.53966	0.50874	0.00017392	-0.632	-0.00021605	-0.12326	-4.2137E-05	341.8536295780687	21.005	0.40358	21.005	20.731	21.135	0					19	9	3	0	0	0	0.39215	1	6580	6580		58.23	10.27	1	1411200			45757	7537	30252	30375	46344	46344					0.029291525806115715
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2762451171875	2	512.277106	1022.53966	-0.32048	-0.00016418	-2.0097	-0.0010295	-2.3302	-0.0011937	512.2757097214937	20.728	0.23665	20.728	20.525	20.761	0					12	7	2	0	0	0	0.19605	1	5818	5818		62.107	33.853	1	209890			45758	7537	30252	30375	46345	46345					0.029291525806115715
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.27734375	2	512.277106	1022.53966	1.2479	0.00063927	-2.9419	-0.0015071	-1.694	-0.00086781	512.2749666678625	20.921	0.51176	20.921	20.713	21.225	0					14	10	2	0	0	0	0.056004	1	6868	6868		93.143	26.714	1	1162600			45759	7537	30252	30375	46346	46346					0.029291525806115715
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2772827148438	2	512.277106	1022.53966	-1.7099	-0.00087595	0.42147	0.00021591	-1.2884	-0.00066004	512.277152519296	20.723	0.24694	20.723	20.629	20.876	0					9	5	2	0	0	0	0.36892	1	5916	5916		44.377	17.581	1	54092			45760	7537	30252	30375	46347	46347					0.029291525806115715
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2767944335938	2	512.277106	1022.53966	1.4221	0.00072849	-2.8583	-0.0014642	-1.4362	-0.00073574	512.2751942075221	20.883	0.31613	20.883	20.726	21.042	0					11	6	3	0	0	0	0.02953	1	6721	6721		109.48	61.563	1	1042700			45761	7537	30252	30375	46348	46348					0.029291525806115715
VEKPSPLTL	9	Unmodified	_VEKPSPLTL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2920227050781	2	492.292225	982.569897	-1.264	-0.00062226	2.0924	0.0010301	0.82836	0.00040779	492.29321975564676	35.082	0.28234	35.082	34.962	35.244	0					26	12	3	0	0	0	0.18416	1	11835	11835		63.534	17.562	1	163890			45762	3578	30253	30376	46349	46349					0.07791511245807214
VEKPSPLTL	9	Unmodified	_VEKPSPLTL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.2926940917969	2	492.292225	982.569897	0.58563	0.0002883	0.41603	0.00020481	1.0017	0.00049311	492.29244425028094	35.284	0.32941	35.284	35.136	35.466	0					21	9	3	0	0	0	0.18416	1	13643	13643		63.534	10.597	1	1040900			45763	3578	30253	30376	46350	46350					0.07791511245807214
VEKPSPLTL	9	Unmodified	_VEKPSPLTL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.29217529296875	2	492.292225	982.569897	0.83583	0.00041147	-0.67787	-0.00033371	0.15797	7.7766E-05	492.2918718731598	35.221	0.41707	35.221	35.015	35.432	0					18	8	3	0	0	0	0.25761	1	13567	13567		54.722	3.5297	1	1525300			45764	3578	30253	30376	46351	46351					0.07791511245807214
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.25799560546875	2	435.258185	868.501818	-0.27257	-0.00011864	-0.09627	-4.1902E-05	-0.36884	-0.00016054	435.2582096446326	22.315	0.15524	22.315	22.24	22.396	0					9	4	3	0	0	0	0.33044	1	6277	6277		47.657	6.8792	1	284750			45765	3703	30254	30377	46352	46352					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2583923339844	2	435.258185	868.501818	-0.42711	-0.00018591	1.244	0.00054146	0.81688	0.00035555	435.2587002278044	22.64	0.31169	22.64	22.414	22.726	0					19	7	4	0	0	0	0.30841	1	7371	7371		49.536	11.725	1	1708000			45766	3703	30254	30377	46353	46353					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.25823974609375	2	435.258185	868.501818	-0.84799	-0.00036909	0.93796	0.00040826	0.089974	3.9162E-05	435.2586099744725	22.328	0.31077	22.328	22.168	22.479	0					17	9	3	0	0	0	0.39215	1	6548	6548		42.396	3.59	1	408710			45767	3703	30254	30377	46354	46354					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.25811767578125	2	435.258185	868.501818	0.82529	0.00035921	-0.84997	-0.00036996	-0.024681	-1.0742E-05	435.2578310810651	22.509	0.26003	22.509	22.4	22.66	0					15	5	4	0	0	0	0.19605	1	7639	7639		62.107	21.329	1	2402900			45768	3703	30254	30377	46355	46355					0.06230686385811168
VEKPVSSIL	9	Unmodified	_VEKPVSSIL_					0	0	0		nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;ENST00000553694.5_1_14:100603907-100610072:+|nuORF	nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2903137207031	2	486.292225	970.569897	-2.9133	-0.0014167	2.1874	0.0010637	-0.72589	-0.000353	486.29321132228137	34.131	0.77452	34.131	33.834	34.609	0					35	23	2	0	0	0	0.24334	1	12183	12183		56.434	8.7765	1	64954			45769	7356	30255	30378	46356	46356					0.08343511245811897
VEKQPPQVL	9	Unmodified	_VEKQPPQVL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.3028564453125	2	519.303124	1036.5917	1.3843	0.00071888	-1.6823	-0.00087363	-0.29801	-0.00015476	519.3021537040436	27.897	0.79302	27.897	27.665	28.458	0					45	19	3	0	0	0	0.22823	1	9847	9847		51.193	0	1	275490			45770	5941	30256	30379	46357	46357					0.07486315994378856
VEKQPPQVL	9	Unmodified	_VEKQPPQVL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.30322265625	2	519.303124	1036.5917	0.18715	9.7186E-05	0.6262	0.00032519	0.81335	0.00042238	519.3034043368529	27.588	0.60894	27.588	27.383	27.992	0					57	21	3	0	0	0	0.13173	2	8904	8754;8904		74.165	42.635	1	374200			45771	5941	30256	30379	46358;46359	46359					0.07486315994378856
VEKQPPQVL	9	Unmodified	_VEKQPPQVL_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.3029174804688	2	519.303124	1036.5917	0.98044	0.00050915	-0.16528	-8.5829E-05	0.81517	0.00042332	519.3028870531543	27.757	0.91973	27.757	27.454	28.374	0					45	22	3	0	0	0	0.25761	1	9017	9017		56.721	3.7844	1	196550			45772	5941	30256	30379	46360	46360					0.07486315994378856
VEKSINSA	8	Unmodified	_VEKSINSA_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	424.22967529296875	2	424.229625	846.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.916	1	15.916	15.416	16.416	0								0	0	0	1.7419	1	4447	4447		30.318	2.0634	1				45773	7798	30257	30380	46361	46361					0.015332191094330483
VEKSVNEVM	9	Unmodified	_VEKSVNEVM_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7631225585938	2	517.762975	1033.5114	1.3126	0.00067964	-1.1265	-0.00058324	0.18619	9.6402E-05	517.7625088162047	25.918	0.30886	25.918	25.744	26.053	0					12	5	3	0	0	0	0.22823	1	8888	8888		58.246	15.382	1	731100			45774	3184	30258	30381	46362	46362					-0.004019133909878292
VEKSVNEVM	9	Unmodified	_VEKSVNEVM_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7633056640625	2	517.762975	1033.5114	0.068856	3.5651E-05	0.91912	0.00047588	0.98797	0.00051154	517.763653626577	25.66	0.14497	25.66	25.589	25.734	0					10	4	3	0	0	0	0.31937	1	8018	8018		48.602	2.6496	1	186450			45775	3184	30258	30381	46363	46363					-0.004019133909878292
VEKSVNEVM	9	Unmodified	_VEKSVNEVM_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7636108398438	2	517.762975	1033.5114	0.91532	0.00047392	-0.5075	-0.00026276	0.40782	0.00021116	517.7626944730514	25.695	0.14703	25.695	25.642	25.789	0					7	3	3	0	0	0	0.15558	1	8219	8219		66.962	15.769	1	152030			45776	3184	30258	30381	46364	46364					-0.004019133909878292
VEKVAIPM	8	Oxidation (M)	_VEKVAIPM(Oxidation (M))_		VEKVAIPM(1)		VEKVAIPM(48)	0	0	1		AGBL4|p.P470Qfs*27|1|0.04|ENSG00000186094|chr1:48534278-48534279|-/TTTGT|frameshift_variant;ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4	AGBL4|p.P470Qfs*27|1|0.04|ENSG00000186094|chr1:48534278-48534279|-/TTTGT|frameshift_variant	AGBL4|p.P470Qfs*27|1|0.04|ENSG00000186094|chr1:48534278-48534279|-/TTTGT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.75445556640625	2	451.754421	901.494289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.502	1	44.502	44.002	45.002	0								0	0	0	1.7419	1	17829	17829		47.916	9.1095	1				45777	89	30259	30382	46365	46365		5			0.039602107938890185
VEKVAKAKK	9	Unmodified	_VEKVAKAKK_					0	0	0			REV__ZNF318|p.A1247Lfs*13|1|0.36|ENSG00000171467|chr6:43340260-43340260|T/-|frameshift_variant	REV__ZNF318|p.A1247Lfs*13|1|0.36|ENSG00000171467|chr6:43340260-43340260|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.22210693359375	3	334.221965	999.644065	-0.66762	-0.00022313	0.79732	0.00026648	0.1297	4.3349E-05	334.2222580913336	11.355	0.12071	11.355	11.302	11.423	0					14	7	3	0	0	0	0.44593	1	2180	2180		37.812	3.8899	1	270980	+		45778	16410	30260	30383	46366	46366					0.1442289912798742
VEKVPNPSL	9	Unmodified	_VEKVPNPSL_					0	0	0		ENST00000575090.1_1_17:79781125-79781671:-|nuORF;ENSG00000225663|ENST00000455127|MCRIP1;ENST00000576679.1_2_17:79781125-79782334:-|nuORF	ENST00000575090.1_1_17:79781125-79781671:-|nuORF	ENST00000575090.1_1_17:79781125-79781671:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7820739746094	2	491.782025	981.549496	-0.071198	-3.5014E-05	-0.29652	-0.00014582	-0.36772	-0.00018084	491.7818461078935	30.106	0.58395	30.106	29.708	30.292	0					53	22	3	0	0	0	0.17062	1	9616	9616		65.157	15.716	1	297030			45779	7870	30261	30384	46367	46367					0.05798340585999995
VEKVPNPSL	9	Unmodified	_VEKVPNPSL_					0	0	0		ENST00000575090.1_1_17:79781125-79781671:-|nuORF;ENSG00000225663|ENST00000455127|MCRIP1;ENST00000576679.1_2_17:79781125-79782334:-|nuORF	ENST00000575090.1_1_17:79781125-79781671:-|nuORF	ENST00000575090.1_1_17:79781125-79781671:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.78167724609375	2	491.782025	981.549496	-0.54281	-0.00026695	-0.038692	-1.9028E-05	-0.5815	-0.00028597	491.78203154759603	30.362	0.72639	30.362	29.884	30.61	0					58	18	5	0	0	0	0.13109	2	11003	10835;11003		72.243	2.1472	1	1429600			45780	7870	30261	30384	46368;46369	46369					0.05798340585999995
VEKVVVVIL	9	Unmodified	_VEKVVVVIL_					0	0	0		ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENSG00000116670|ENST00000376692|MAD2L2	ENSG00000116670|ENST00000376692|MAD2L2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.3363952636719	2	499.336436	996.658318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.722	1	45.722	45.222	46.222	0								0	0	0	0.34845	1	17661	17661		25.574	5.5773	1				45781	2993	30262	30385	46370	46370					0.15985551556298105
VEKYIEEQL	9	Unmodified	_VEKYIEEQL_					0	0	0		ARL2BP|p.S71Y|1|0.28|ENSG00000102931|chr16:57249771-57249771|C/A|missense_variant;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	ARL2BP|p.S71Y|1|0.28|ENSG00000102931|chr16:57249771-57249771|C/A|missense_variant	ARL2BP|p.S71Y|1|0.28|ENSG00000102931|chr16:57249771-57249771|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.8024291992188	2	575.803154	1149.59175	-0.092808	-5.3439E-05	-0.087507	-5.0387E-05	-0.18032	-0.00010383	575.803029105048	35.342	0.19934	35.342	35.257	35.457	0					15	5	3	0	0	0	0.017741	1	13237	13237		125.71	42.962	1	356220			45782	222	30263	30386	46371	46371					0.02294271203709286
VEKYIEEQL	9	Unmodified	_VEKYIEEQL_					0	0	0		ARL2BP|p.S71Y|1|0.28|ENSG00000102931|chr16:57249771-57249771|C/A|missense_variant;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	ARL2BP|p.S71Y|1|0.28|ENSG00000102931|chr16:57249771-57249771|C/A|missense_variant	ARL2BP|p.S71Y|1|0.28|ENSG00000102931|chr16:57249771-57249771|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.8035888671875	2	575.803154	1149.59175	3.3099	0.0019058	-3.1328	-0.0018039	0.1771	0.00010197	575.8012801329378	35.254	0.32136	35.254	35.145	35.466	0					15	6	4	0	0	0	0.029571	1	13608	13608		109.44	26.688	1	846610			45783	222	30263	30386	46372	46372					0.02294271203709286
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.2772216796875	2	494.277106	986.53966	-0.049831	-2.463E-05	0.98145	0.00048511	0.93162	0.00046048	494.2779052862066	31.254	0.27248	31.254	31.181	31.453	0					25	11	3	0	0	0	0.11411	1	10029	10029		76.17	7.3235	1	178330			45784	8729	30264	30387	46373	46373					0.04585152580614249
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.27703857421875	2	494.277106	986.53966	0.75671	0.00037402	-0.29981	-0.00014819	0.4569	0.00022583	494.2770285944264	31.54	0.4983	31.54	31.372	31.871	0					35	12	5	0	0	0	0.082776	1	11479	11479		83.647	0.89654	1	1773000			45785	8729	30264	30387	46374	46374					0.04585152580614249
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2770080566406	2	494.277106	986.53966	-1.2589	-0.00062225	1.8294	0.00090425	0.57052	0.000282	494.27826225815335	31.341	0.3041	31.341	31.225	31.529	0					31	12	4	0	0	0	0.02953	1	10358	10358		109.48	13.663	1	178880			45786	8729	30264	30387	46375	46375					0.04585152580614249
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2774963378906	2	494.277106	986.53966	0.67856	0.00033539	-0.09509	-4.7001E-05	0.58347	0.00028839	494.27736951850034	31.554	0.38271	31.554	31.381	31.764	0					32	8	5	0	0	0	0.12834	1	11899	11899		72.879	7.4139	1	1016400			45787	8729	30264	30387	46376	46376					0.04585152580614249
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2770080566406	2	494.277106	986.53966	0.20904	0.00010332	-0.26628	-0.00013161	-0.057238	-2.8291E-05	494.2769899560345	31.324	0.1763	31.324	31.243	31.42	0					9	4	3	0	0	0	0.04067	1	10759	10759		98.582	26.705	1	110570			45788	8729	30264	30387	46377	46377					0.04585152580614249
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.27728271484375	2	494.277106	986.53966	0.049828	2.4629E-05	-0.28115	-0.00013897	-0.23132	-0.00011434	494.2770960334824	31.311	0.24669	31.311	31.199	31.446	0					16	6	3	0	0	0	0.10506	1	10752	10752		78.264	14.057	1	217660			45789	8729	30264	30387	46378	46378					0.04585152580614249
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2768249511719	2	494.277106	986.53966	-0.63766	-0.00031518	1.0132	0.00050078	0.3755	0.0001856	494.27773035053775	31.485	0.40855	31.485	31.275	31.684	0					26	8	4	0	0	0	0.054723	1	11763	11763		93.598	16.28	1	1111500			45790	8729	30264	30387	46379	46379					0.04585152580614249
VELAESRAL	9	Unmodified	_VELAESRAL_					0	0	0		ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	ENST00000340533.8_2_18:71959085-71959217:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.27703857421875	2	494.277106	986.53966	0.90892	0.00044926	-0.17164	-8.4838E-05	0.73728	0.00036442	494.27715815922204	31.529	0.41489	31.529	31.353	31.768	0					31	8	5	0	0	0	0.035106	1	11775	11775		104.01	13.413	1	1633100			45791	8729	30264	30387	46380	46380					0.04585152580614249
VELDHATL	8	Unmodified	_VELDHATL_					0	0	0		TBL2|p.P180Qfs*25|1|0.39|ENSG00000106638|chr7:73573379-73573379|G/-|frameshift_variant;ENST00000452475.5_1_7:72986280-72992879:-|nuORF;ENSG00000106638|ENST00000305632|TBL2	TBL2|p.P180Qfs*25|1|0.39|ENSG00000106638|chr7:73573379-73573379|G/-|frameshift_variant	TBL2|p.P180Qfs*25|1|0.39|ENSG00000106638|chr7:73573379-73573379|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	449.23736572265625	2	449.23745	896.460347	-0.26453	-0.00011884	-0.75057	-0.00033719	-1.0151	-0.00045602	449.2372540745733	29.002	0.26863	29.002	28.88	29.148	0					9	7	2	0	0	0	0.60719	1	9723	9723		47.916	3.3845	1	43093			45792	2451	30265	30388	46381	46381					0.007975056264740488
VELEQKIQ	8	Unmodified	_VELEQKIQ_					0	0	0		CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7793273925781	2	493.779482	985.544411	-0.47718	-0.00023562	0.20198	9.9732E-05	-0.2752	-0.00013589	493.77961926399433	28.187	0.73261	28.187	27.953	28.686	0					46	18	3	0	0	0	0.51384	1	10057	10057		58.782	0	1	1092200			45793	472	30266	30389	46382	46382					0.05106036723384477
VELGSKLQ	8	Unmodified	_VELGSKLQ_					0	0	0			REV__ENST00000259339.6_1_9:132572399-132572609:+|nuORF	REV__ENST00000259339.6_1_9:132572399-132572609:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.255859375	2	437.255643	872.496732	0.034857	1.5242E-05	0.36238	0.00015845	0.39723	0.00017369	437.2558502557833	24.72	0.1875	24.72	24.627	24.814	0					8	4	3	0	0	0	0.27512	1	8365	8365		90.777	2.5997	1	304840	+		45794	18003	30267	30390	46383	46383					0.05538382523195651
VELGTQPA	8	Unmodified	_VELGTQPA_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	407.7188720703125	2	407.718893	813.423233	0.04958	2.0215E-05	-0.036904	-1.5046E-05	0.012676	5.1683E-06	407.71886302368955	28.787	0.41019	28.787	28.581	28.991	0					15	8	2	0	0	0	0.28427	1	10530	10530		87.754	10.908	1	838900			45795	5289	30268	30391	46384	46384					0.009058340807200693
VELGTQPAT	9	Unmodified	_VELGTQPAT_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2425231933594	2	458.242732	914.470912	0.05895	2.7013E-05	-0.67493	-0.00030928	-0.61598	-0.00028227	458.24251910366115	28.912	0.47085	28.912	28.753	29.224	0					36	16	3	0	0	0	0.014688	1	9069	9069		131.03	6.4371	1	384000			45796	5289	30269	30392	46385	46385					0.010254882809135779
VELGTQPAT	9	Unmodified	_VELGTQPAT_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2423400878906	2	458.242732	914.470912	-0.15608	-7.1521E-05	-0.15567	-7.1337E-05	-0.31175	-0.00014286	458.242650779706	29.171	0.42377	29.171	29.022	29.446	0					29	9	4	0	0	0	0.00324	1	10758	10758		167.23	46.608	1	1135000			45797	5289	30269	30392	46386	46386					0.010254882809135779
VELGTQPAT	9	Unmodified	_VELGTQPAT_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2428283691406	2	458.242732	914.470912	-0.018191	-8.336E-06	0.048345	2.2154E-05	0.030154	1.3818E-05	458.24277960895864	28.985	0.3901	28.985	28.806	29.196	0					21	10	3	0	0	0	0.022525	1	9684	9684		117.81	6.1628	1	223850			45798	5289	30269	30392	46387	46387					0.010254882809135779
VELIKDTK	8	Unmodified	_VELIKDTK_					0	0	0		PPP1R3F|p.E571K|1|0.24|ENSG00000049769|chrX:49286401-49286401|G/A|missense_variant	PPP1R3F|p.E571K|1|0.24|ENSG00000049769|chrX:49286401-49286401|G/A|missense_variant	PPP1R3F|p.E571K|1|0.24|ENSG00000049769|chrX:49286401-49286401|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2838439941406	2	473.2844	944.554247	0.68066	0.00032215	-2.9093	-0.0013769	-2.2287	-0.0010548	473.28324858633914	31.189	0.14039	31.189	31.14	31.28	0					6	3	2	0	0	0	0.66372	1	11340	11340		38.806	0	1	41200			45799	11960	30270	30393	46388	46388					0.07975224728761532
VELILHSL	8	Unmodified	_VELILHSL_					0	0	0		tr|U7SSN5|U7SSN5_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01515PE=3SV=1	tr|U7SSN5|U7SSN5_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01515PE=3SV=1	tr|U7SSN5|U7SSN5_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01515PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.28228759765625	2	462.28166	922.548768	0.71984	0.00033277	-0.56918	-0.00026312	0.15065	6.9644E-05	462.28162769679125	47.252	0.12291	47.252	47.165	47.287	0					13	7	2	0	0	0	0.54629	1	18062	18062		55.504	0	1	54880			45800	22747	30271	30394	46389	46389					0.08439545936960258
VELKVEQPAP	10	Unmodified	_VELKVEQPAP_					0	0	0			REV__TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant	REV__TNRC6B|p.L546Sfs*63|1|0.35|ENSG00000100354|chr22:40265862-40265862|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.314208984375	2	555.313689	1108.61282	1.3074	0.00072603	-0.7773	-0.00043165	0.53013	0.00029439	555.3133417531548	38.918	0.32941	38.918	38.721	39.05	0					31	19	2	0	0	0	0.58189	1	12638	12638		36.447	4.9169	1	94489	+		45801	21659	30272	30395	46390	46390					0.062862813032325
VELLKTQK	8	Unmodified	_VELLKTQK_					0	0	0			REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.80010986328125	2	479.800217	957.585882	-0.48334	-0.00023191	0.27333	0.00013114	-0.21001	-0.00010076	479.80040926257357	23.086	0.16764	23.086	22.978	23.145	0					6	3	2	0	0	0	0.58597	1	7916	7916		51.335	0	1	193680	+		45802	19269	30273	30396	46391	46391					0.10539217482710228
VELQAGAGGPG	11	Unmodified	_VELQAGAGGPG_					0	0	0		ENST00000591688.5_1_19:13875372-13879601:+|nuORF;ENST00000589290.1_1_19:13875402-13879305:+|nuORF;ENST00000588526.5_1_19:13875372-13879175:+|nuORF;nc|ENSG00000037757|Q9BV20-2|MRI1;MRI1|p.H330Tfs*24|4|0.35|ENSG00000037757|chr19:13772154-13772154|C/-|frameshift_variant;ENSG00000037757|ENST00000040663|MRI1	ENST00000591688.5_1_19:13875372-13879601:+|nuORF;nc|ENSG00000037757|Q9BV20-2|MRI1	nc|ENSG00000037757|Q9BV20-2|MRI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.24639892578125	2	478.245806	954.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.5	1	13.5	13	14	0								0	0	0	0.45674	1	2656	2656		14.137	0	1				45803	10966;1178	30274	30397	46392	46392					-0.001999934875584586
VELQRIHRAP	10	Unmodified	_VELQRIHRAP_					0	0	0		ENST00000576406.5_1_17:1665378-1673212:+|nuORF	ENST00000576406.5_1_17:1665378-1673212:+|nuORF	ENST00000576406.5_1_17:1665378-1673212:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	407.24078369140625	3	406.907039	1217.69929	-2.2851	-0.0009298	0.88977	0.00036205	-1.3953	-0.00056775	406.9074153937325	28.874	0.2313	28.874	28.78	29.012	0					15	5	4	0	0	0	0.73274	1	9630	9630		16.007	0	1	566760			45804	10829	30275	30398	46393	46393					0.09914705648452582
VELRQVTQM	9	Unmodified	_VELRQVTQM_					0	0	0		ENSG00000096696|ENST00000379802|DSP;DSP|p.R1458Q|1|0.27|ENSG00000096696|chr6:7580563-7580563|G/A|missense_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.298583984375	2	552.297516	1102.58048	1.6017	0.00088463	0.12924	7.138E-05	1.731	0.00095601	552.2975965969462	34.31	0.32688	34.31	34.213	34.54	0					13	8	2	0	0	0	0.35096	1	13224	13224		54.722	13.296	1	437830			45805	1919	30276	30399	46394	46394					0.033291706285808687
VELSAGNIVN	10	Unmodified	_VELSAGNIVN_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2735290527344	2	508.274564	1014.53457	-0.097864	-4.9742E-05	0.31386	0.00015953	0.216	0.00010979	508.27462975725155	33.955	0.30963	33.955	33.85	34.16	0					27	13	3	0	0	0	0.4287	1	11117	11117		53.089	3.5529	1	265470			45806	1599	30277	30400	46395	46395					0.027888487179893673
VEMDTRSP	8	Unmodified	_VEMDTRSP_					0	0	0		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.71868896484375	2	467.718567	933.422581	0.039874	1.865E-05	-0.062022	-2.9009E-05	-0.022148	-1.0359E-05	467.718624804328	16.885	0.40199	16.885	16.75	17.152	0					37	15	3	0	0	0	0.7126	1	3894	3894		31.955	0.42505	1	140640			45807	11467	30278	30401	46396	46396					-0.046793286306410664
VEMHHEAL	8	Unmodified	_VEMHHEAL_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000395772.3_1_X:97645409-97645481:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2293701171875	2	483.229102	964.443651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.587	1	21.587	21.087	22.087	0								0	0	0	1.7419	1	6220	6220		47.916	3.3845	1				45808	5177	30279	30402	46397	46397					-0.03999318531123208
VEMHHEAL	8	Unmodified	_VEMHHEAL_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000395772.3_1_X:97645409-97645481:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.22882080078125	2	483.229102	964.443651	0.67935	0.00032828	-1.3047	-0.00063047	-0.62534	-0.00030218	483.2284238615346	21.767	0.21507	21.767	21.708	21.924	0					8	4	3	0	0	0	0.46905	1	7278	7278		63.306	17.354	1	929580			45809	5177	30279	30402	46398	46398					-0.03999318531123208
VEMHHEAL	8	Unmodified	_VEMHHEAL_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000395772.3_1_X:97645409-97645481:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2285461425781	2	483.229102	964.443651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.658	1	21.658	21.158	22.158	0								0	0	0	1.7419	1	6317	6317		50.025	2.1089	1				45810	5177	30279	30402	46399	46399					-0.03999318531123208
VEMIAIAK	8	Oxidation (M)	_VEM(Oxidation (M))IAIAK_		VEM(1)IAIAK		VEM(53)IAIAK	0	0	1			REV__ENST00000491455.5_1_1:214507363-214510124:+|nuORF	REV__ENST00000491455.5_1_1:214507363-214510124:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	445.7571105957031	2	445.754421	889.494289	3.3228	0.0014811	4.1081	0.0018312	7.4308	0.0033123	445.75631583600557	32.834	0.095448	32.834	32.745	32.84	0					5	3	2	0	0	0	0.5676	1	10979	10979		53.351	9.2347	1	35793	+		45811	15196	30280	30403	46400	46400		578			0.04512210793882332
VEMIVIELTF	10	Unmodified	_VEMIVIELTF_					0	0	0			REV__CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant	REV__CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.3298950195312	2	597.32795	1192.64135	3.1645	0.0018902	0.33421	0.00019963	3.4987	0.0020899	597.3280843735273	31.149	0.40805	31.149	30.995	31.403	0					27	8	5	0	0	0	0.46215	1	11603	11603		49.442	1.5259	1	1106800	+		45812	12320	30281	30404	46401	46401					0.05273262888135832
VENGTLSKN	9	Unmodified	_VENGTLSKN_					0	0	0		sp|Q6SWC4|UL06_HCMVMUncharacterizedproteinUL6OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL6PE=3SV=1	sp|Q6SWC4|UL06_HCMVMUncharacterizedproteinUL6OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL6PE=3SV=1	sp|Q6SWC4|UL06_HCMVMUncharacterizedproteinUL6OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL6PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.25067138671875	2	481.251089	960.487624	-2.9234	-0.0014069	1.6762	0.00080668	-1.2471	-0.00060019	481.25227298044547	21.671	0.16285	21.671	21.598	21.761	0					10	4	3	0	0	0	0.42902	1	6330	6330		39.253	1.4413	1	159520			45813	22481	30282	30405	46402	46402					0.005799891668516466
VENIFSRIVD	10	Unmodified	_VENIFSRIVD_					0	0	0		SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000115904|Q07889-2|SOS1;SOS1|p.L339Tfs*16|1|0.39|ENSG00000115904|chr2:39035270-39035271|AA/-|frameshift_variant;SOS1|p.F494Vfs*9|1|0.13|ENSG00000115904|chr2:39022949-39022950|-/T|frameshift_variant;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant	SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant	SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.3216552734375	2	596.322045	1190.62954	-0.55739	-0.00033238	-0.17001	-0.00010138	-0.7274	-0.00043376	596.3217908908377	38.503	0.19118	38.503	38.413	38.605	0					21	10	3	0	0	0	0.66699	1	12979	12979		14.865	0	1	111600			45814	2945	30283	30406	46403	46403					0.041847821891678905
VENIQRVAA	9	Unmodified	_VENIQRVAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2818603515625	2	500.282723	998.550893	0.35961	0.00017991	-1.0201	-0.00051035	-0.66051	-0.00033044	500.281915744345	24.51	0.11709	24.51	24.435	24.552	0					6	3	2	0	0	0	0.46194	1	7241	7241		36.447	0.82846	1	128780			45815	6450	30284	30407	46404	46404					0.05155974674744357
VENKLDVL	8	Unmodified	_VENKLDVL_					0	0	0			REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant	REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2684020996094	2	465.26875	928.522947	0.67782	0.00031537	-2.3021	-0.0010711	-1.6243	-0.00075573	465.2681848934906	23.103	0.2178	23.103	22.995	23.212	0					10	4	3	0	0	0	0.3961	1	7929	7929		71.296	4.8664	1	1040100	+		45816	15981	30285	30408	46405	46405					0.055826516946467564
VENMLDLAW	9	Unmodified	_VENMLDLAW_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2;ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF;NOD2|p.S506Pfs*11|2|0.28|ENSG00000167207|chr16:50711420-50711420|G/-|frameshift_variant;NOD2|p.S506Vfs*73|1|0.24|ENSG00000167207|chr16:50711419-50711420|-/G|frameshift_variant;NOD2|p.P528Qfs*235|4|0.37|ENSG00000167207|chr16:50711488-50711488|C/-|frameshift_variant	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.2650756835938	2	545.765517	1089.51648	1.1181	0.00061021	-3.9131	-0.0021356	-2.795	-0.0015254	546.2645407680279	36.237	0.16317	36.237	36.158	36.321	0					10	6	2	0	0	0	0.26904	1	12965	12965		53.351	3.8154	1	63521			45817	5979	30286	30409	46406	46406					-0.02469609528361616
VENNLILKM	9	Unmodified	_VENNLILKM_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3056640625	2	537.30481	1072.59507	0.2937	0.00015781	0.78995	0.00042445	1.0837	0.00058225	537.3051115672929	41.685	0.14261	41.685	41.602	41.744	0					9	5	2	0	0	0	0.048471	1	16378	16378		95.815	33.708	1	59617			45818	4419	30287	30410	46407	46407					0.061672427767234694
VENNLILKM	9	Unmodified	_VENNLILKM_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.305419921875	2	537.30481	1072.59507	-1.4203	-0.00076314	3.1922	0.0017152	1.7719	0.00095202	537.3063378433177	41.446	0.1101	41.446	41.418	41.528	0					9	6	2	0	0	0	0.27249	1	14609	14609		52.937	8.4056	1	39573			45819	4419	30287	30410	46408	46408					0.061672427767234694
VENQSAQE	8	Unmodified	_VENQSAQE_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.704345703125	2	452.703971	903.393389	-0.41327	-0.00018709	0.64547	0.00029221	0.2322	0.00010512	452.7044867724257	15.221	0.31649	15.221	15.113	15.429	0					12	6	3	0	0	0	0.5535	1	3974	3974		54.776	1.4249	1	4208200			45820	11514	30288	30411	46409	46409					-0.06217149655276444
VENSGQRESL	10	Unmodified	_VENSGQRESL_					0	0	0		DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant;DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant;DNTTIP2|p.N659Mfs*6|1|0.42|ENSG00000067334|chr1:93872163-93872163|T/-|frameshift_variant;ENSG00000067334|ENST00000436063|DNTTIP2	DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant	DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.7753295898438	2	559.775459	1117.53637	0.50815	0.00028445	-0.36484	-0.00020423	0.1433	8.0218E-05	559.7750318642912	20.428	0.19143	20.428	20.373	20.564	0					6	4	2	0	0	0	0.23114	1	6347	6347		75.652	26.211	1	403910			45821	835	30289	30412	46410	46410					-0.017701422640357123
VENSRLAAE	9	Unmodified	_VENSRLAAE_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7584533691406	2	494.756538	987.498523	2.8135	0.001392	1.1255	0.00055687	3.939	0.0019489	494.7571065264745	21.412	0.26677	21.412	21.304	21.571	0					8	5	2	0	0	0	0.24095	1	6978	6978		56.721	3.3696	1	1301300			45822	3640	30290	30413	46411	46411					0.00427391541131783
VEPISTPTY	9	Unmodified	_VEPISTPTY_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7579345703125	2	503.758215	1005.50188	1.1908	0.00059988	-1.5522	-0.00078191	-0.36133	-0.00018202	503.7579296336387	40.589	0.4202	40.589	40.342	40.762	0					15	9	3	0	0	0	0.45358	1	16139	16139		37.159	0	1	75041	+		45823	15284	30291	30414	46412	46412					-0.0006535840487913447
VEPNPGIPGA	10	Unmodified	_VEPNPGIPGA_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;KDM6B|p.P544Sfs*11|1|0.14|ENSG00000132510|chr17:7847912-7847913|-/C|frameshift_variant;KDM6B|p.R513Afs*69|1|0.84|ENSG00000132510|chr17:7847819-7847819|C/-|frameshift_variant;KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant;KDM6B|p.T743Pfs*39|1|0.55|ENSG00000132510|chr17:7848510-7848510|C/-|frameshift_variant;KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant;KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7501220703125	2	475.750724	949.486896	-1.5469	-0.00073592	0.90786	0.00043191	-0.63899	-0.000304	475.75131460966315	34.164	0.1112	34.164	34.118	34.229	0					8	5	2	0	0	0	0.68774	1	11515	11515		23.523	0.48021	1	35982			45824	3794	30292	30415	46413	46413					0.010131945178045498
VEPVKTYAL	9	Unmodified	_VEPVKTYAL_					0	0	0		ENSG00000156958|ENST00000560031|GALK2;nc|ENSG00000156958|Q01415-2|GALK2;ENST00000559040.1_1_15:49448112-49518881:+|nuORF	ENSG00000156958|ENST00000560031|GALK2	ENSG00000156958|ENST00000560031|GALK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2925720214844	2	510.292225	1018.5699	1.3709	0.00069958	-1.6899	-0.00086236	-0.319	-0.00016278	510.29159910092307	33.636	0.36746	33.636	33.332	33.7	0					21	7	4	0	0	0	0.28897	1	12793	12793		51.193	8.7182	1	2081500			45825	5190	30293	30416	46414	46414					0.061355112458159056
VEQAHEQLY	9	Unmodified	_VEQAHEQLY_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7708740234375	2	558.769645	1115.52474	-0.81747	-0.00045678	1.371	0.00076608	0.55353	0.0003093	558.7706223773034	32.711	0.22681	32.711	32.623	32.85	0					10	6	2	0	0	0	0.2873	1	11382	11382		51.335	1.8939	1	110060	+		45826	13296	30294	30417	46415	46415					-0.028403392873769917
VEQGVKFSL	9	Unmodified	_VEQGVKFSL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7816467285156	2	503.782025	1005.5495	-0.06084	-3.065E-05	-1.0824	-0.00054529	-1.1432	-0.00057594	503.7819604699526	39.002	0.17327	39.002	38.916	39.09	0					8	6	2	0	0	0	0.095583	1	14830	14830		80.455	16.247	1	103410			45827	5914	30295	30418	46416	46416					0.04694340586001999
VEQGVKFSL	9	Unmodified	_VEQGVKFSL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7818298339844	2	503.782025	1005.5495	1.0137	0.0005107	-1.7611	-0.0008872	-0.74734	-0.00037649	503.78145640832275	38.957	0.09927	38.957	38.891	38.99	0					6	3	2	0	0	0	0.14578	1	15310	15310		68.846	16.547	1	111010			45828	5914	30295	30418	46417	46417					0.04694340586001999
VEQLELLK	8	Unmodified	_VEQLELLK_					0	0	0			REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2934875488281	2	486.292225	970.569897	0.69067	0.00033587	0.26673	0.00012971	0.9574	0.00046558	486.2929717593197	34.357	0.59692	34.357	34.105	34.702	0					34	15	3	0	0	0	0.58686	1	12887	12887		51.193	0	1	198530	+		45829	14659	30296	30419	46418	46418					0.08343511245823265
VEQQLQQL	8	Unmodified	_VEQQLQQL_					0	0	0		ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2685546875	2	493.269281	984.52401	0.32619	0.0001609	-1.8974	-0.00093592	-1.5712	-0.00077502	493.26862488282313	24.014	0.18582	24.014	23.969	24.155	0					6	4	2	0	0	0	0.70598	1	7432	7432		38.806	0	1	41997			45830	7904	30297	30420	46419	46419					0.031128660635772576
VEQTKEHAL	9	Unmodified	_VEQTKEHAL_					0	0	0		nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2;ENST00000488909.1_1_9:131260677-131262531:+|nuORF	nc|ENSG00000136811|Q5BJF6-2|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7800903320312	2	527.780013	1053.54547	1.753	0.0009252	-1.6119	-0.00085072	0.14112	7.4481E-05	527.7791216252624	17.492	0.11548	17.492	17.435	17.55	0					4	2	2	0	0	0	0.04067	1	5216	5216		98.582	10.886	1	1113600			45831	4108	30298	30421	46420	46420					0.02084251092287559
VEQVVNGAL	9	Unmodified	_VEQVVNGAL_					0	0	0		PWWP2B|p.D74Mfs*4|1|0.21|ENSG00000171813|chr10:132404716-132404716|G/-|frameshift_variant;PWWP2B|p.P86Lfs*100|1|0.35|ENSG00000171813|chr10:132404751-132404751|C/-|frameshift_variant;nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B	PWWP2B|p.D74Mfs*4|1|0.21|ENSG00000171813|chr10:132404716-132404716|G/-|frameshift_variant	PWWP2B|p.D74Mfs*4|1|0.21|ENSG00000171813|chr10:132404716-132404716|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.758056640625	2	464.758549	927.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.827	1	22.827	22.327	23.327	0								0	0	0	0.25587	1	7651	7651		42.864	2.0861	1				45832	6322	30299	30422	46421	46421					0.03589481034862274
VERDSRLLGF	10	Unmodified	_VERDSRLLGF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	596.32763671875	2	596.327662	1190.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.355	1	35.355	34.855	35.855	0								0	0	0	0.32041	1	11960	11960		47.657	6.8792	1				45833	5481	30300	30423	46422	46422					0.053076042833026804
VERGPDEAM	9	Unmodified	_VERGPDEAM_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2295837402344	2	502.229299	1002.44404	0.50333	0.00025279	-0.24793	-0.00012452	0.2554	0.00012827	502.2291315365537	22.316	0.24126	22.316	22.165	22.406	0					19	7	3	0	0	0	0.38666	1	6268	6268		42.864	3.6114	1	167760			45834	1125	30301	30424	46423	46423					-0.05707943601942134
VERGPDEAM	9	Unmodified	_VERGPDEAM_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.2292785644531	2	502.229299	1002.44404	0.70859	0.00035587	-1.0929	-0.00054887	-0.38428	-0.000193	502.22889639732534	22.638	0.43291	22.638	22.384	22.817	0					27	10	4	0	0	0	0.04067	1	7361	7361		98.582	43.078	1	1039500			45835	1125	30301	30424	46424	46424					-0.05707943601942134
VERGPDEAM	9	Unmodified	_VERGPDEAM_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.22918701171875	2	502.229299	1002.44404	-0.92469	-0.00046441	0.82418	0.00041393	-0.10051	-5.048E-05	502.22983434241206	22.309	0.34667	22.309	22.132	22.479	0					19	10	3	0	0	0	0.35021	1	6533	6533		45.972	5.3996	1	189780			45836	1125	30301	30424	46425	46425					-0.05707943601942134
VERGPDEAM	9	Unmodified	_VERGPDEAM_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2291564941406	2	502.229299	1002.44404	0.97461	0.00048948	-1.4028	-0.00070453	-0.42818	-0.00021505	502.228756605552	22.566	0.45764	22.566	22.253	22.711	0					26	9	4	0	0	0	0.12834	1	7642	7642		72.879	24.964	1	1073900			45837	1125	30301	30424	46426	46426					-0.05707943601942134
VERGPDEAM	9	Unmodified	_VERGPDEAM_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2294616699219	2	502.229299	1002.44404	0.13877	6.9694E-05	-0.72416	-0.00036369	-0.58539	-0.000294	502.2291084402654	22.417	0.24169	22.417	22.246	22.488	0					12	5	3	0	0	0	0.35021	1	6649	6649		45.972	2.3462	1	250980			45838	1125	30301	30424	46427	46427					-0.05707943601942134
VERLQREPG	9	Unmodified	_VERLQREPG_					0	0	0		nc|ENSG00000288393|Q92670|ZNF75CP	nc|ENSG00000288393|Q92670|ZNF75CP	nc|ENSG00000288393|Q92670|ZNF75CP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.86981201171875	3	361.868362	1082.58326	1.1694	0.00042316	2.2149	0.00080149	3.3842	0.0012246	361.8691232714218	33.143	0.55892	33.143	33.091	33.65	0					27	11	3	0	0	0	0.44593	1	12580	12580		37.812	2.6595	1	1371500			45839	11824	30302	30425	46428	46428					0.04526762077762214
VERLTGVSI	9	Unmodified	_VERLTGVSI_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1;nc|ENSG00000137312|O75955-2|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.28759765625	2	487.287474	972.560395	-0.33561	-0.00016354	0.45182	0.00022017	0.11621	5.6629E-05	487.2877446045055	35.747	0.31263	35.747	35.629	35.942	0					12	8	2	0	0	0	0.25761	1	13436	13436		54.722	8.7501	1	375690			45840	4159	30303	30426	46429	46429					0.07301742960294177
VERPFASL	8	Unmodified	_VERPFASL_					0	0	0			REV__ADGRA2|p.L985Pfs*2|1|0.18|ENSG00000020181|chr8:37841292-37841292|T/-|frameshift_variant	REV__ADGRA2|p.L985Pfs*2|1|0.18|ENSG00000020181|chr8:37841292-37841292|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7555847167969	2	459.75581	917.497067	-0.91647	-0.00042135	0.31943	0.00014686	-0.59704	-0.00027449	459.75601744126374	32.778	0.251	32.778	32.632	32.883	0					17	9	2	0	0	0	0.61938	1	10971	10971		45.952	6.6991	1	83814	+		45841	12087	30304	30427	46430	46430					0.03501802243044949
VERRPLGWP	9	Unmodified	_VERRPLGWP_					0	0	0		ENST00000489692.1_2_1:235492632-235492674:+|nuORF	ENST00000489692.1_2_1:235492632-235492674:+|nuORF	ENST00000489692.1_2_1:235492632-235492674:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.3141479492188	2	555.314358	1108.61416	-1.067	-0.00059254	1.2385	0.00068774	0.17143	9.5197E-05	555.3150694942648	38.981	0.32073	38.981	38.795	39.116	0					28	17	2	0	0	0	0.5654	1	13889	13889		25.45	5.4534	1	96293			45842	10059	30305	30428	46431	46431					0.06419960182665818
VERSCWEA	8	Unmodified	_VERSCWEA_					0	0	0		ENST00000260743.9_1_10:105210904-105210991:-|nuORF;ENST00000369788.7_1_10:105210904-105212036:-|nuORF	ENST00000260743.9_1_10:105210904-105210991:-|nuORF	ENST00000260743.9_1_10:105210904-105210991:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2197570800781	2	490.218734	978.422915	-0.12071	-5.9176E-05	3.1412	0.0015399	3.0204	0.0014807	490.2203672364296	19.199	0.13597	19.199	19.095	19.231	0					6	4	2	0	0	0	0.7126	1	4929	4929		31.955	1.4512	1	47130			45843	8290	30306	30429	46432	46432					-0.06715908910791768
VERTRREA	8	Unmodified	_VERTRREA_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;ENST00000494069.1_1_3:197566242-197575018:+|nuORF	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.7820129394531	2	508.783422	1015.55229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.574	1	14.574	14.074	15.074	0								0	0	0	1.7419	1	3180	3180		11.511	0	1				45844	7119	30307	30430	46433	46433					0.04513608763511456
VERVIQQL	8	Unmodified	_VERVIQQL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.79486083984375	2	492.795466	983.57638	0.6078	0.00029952	-0.97507	-0.00048051	-0.36726	-0.00018098	492.79505485556746	32.182	0.77974	32.182	31.99	32.77	0					38	18	4	0	0	0	0.41	1	12196	12196		69.628	3.8245	1	2784400			45845	7554	30308	30431	46434	46434					0.08393449197183145
VERVITIM	8	Unmodified	_VERVITIM_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.77923583984375	2	480.78097	959.547388	0.92262	0.00044358	-1.7942	-0.00086262	-0.87158	-0.00041904	480.78032034108037	38.784	0.35442	38.784	38.627	38.981	0					12	7	3	0	0	0	0.46013	1	15269	15269		64.207	6.396	1	494990			45846	7893	30309	30432	46435	46435					0.06599588576534643
VERVMRQTQ	9	Unmodified	_VERVMRQTQ_					0	0	0		TTC27|p.A406V|1|0.33|ENSG00000018699|chr2:32702904-32702904|C/T|missense_variant	TTC27|p.A406V|1|0.33|ENSG00000018699|chr2:32702904-32702904|C/T|missense_variant	TTC27|p.A406V|1|0.33|ENSG00000018699|chr2:32702904-32702904|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.804931640625	2	573.806039	1145.59753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.001	1	14.001	13.501	14.501	0								0	0	0	0.17415	1	3315	3315		39.253	0	1				45847	23074	30310	30433	46436	46436					0.030550912344097014
VERVNEPSI	9	Unmodified	_VERVNEPSI_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.7800903320312	2	521.780013	1041.54547	0.79148	0.00041298	-0.2697	-0.00014073	0.52178	0.00027225	521.7798701830566	28.946	0.28627	28.946	28.874	29.16	0					14	10	2	0	0	0	0.24095	1	9093	9093		56.721	1.9447	1	105920			45848	2006	30311	30434	46437	46437					0.026362510922808724
VERVNEPSI	9	Unmodified	_VERVNEPSI_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7802124023438	2	521.780013	1041.54547	0.07956	4.1513E-05	0.6651	0.00034704	0.74466	0.00038855	521.7805003498946	29.204	0.45022	29.204	29.034	29.485	0					22	11	3	0	0	0	0.079477	1	10412	10412		84.817	8.6476	1	482880			45849	2006	30311	30434	46438	46438					0.026362510922808724
VERVVVDAL	9	Unmodified	_VERVVVDAL_					0	0	0		ENSG00000223572|ENST00000413453|CKMT1A;ENSG00000237289|ENST00000441322|CKMT1B;nc|ENSG00000237289|P12532-2|CKMT1A	ENSG00000223572|ENST00000413453|CKMT1A	ENSG00000223572|ENST00000413453|CKMT1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.29486083984375	2	500.295299	998.576045	1.093	0.00054681	-2.5203	-0.0012609	-1.4273	-0.00071408	500.29417418594073	36.521	0.21666	36.521	36.362	36.579	0					9	4	3	0	0	0	0.30841	1	14216	14216		49.536	5.005	1	216830			45850	7859	30312	30435	46439	46439					0.07670029477333173
VESGKLFSV	9	Unmodified	_VESGKLFSV_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000529863.1_1_11:47861610-47869870:-|nuORF;nc|ENSG00000030066|Q12769-2|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2690734863281	2	483.26875	964.522947	-0.098733	-4.7714E-05	0.6706	0.00032408	0.57187	0.00027637	483.26909247081494	37.958	0.17593	37.958	37.88	38.055	0					13	6	3	0	0	0	0.090954	1	14874	14874		75.043	14.071	1	105720			45851	1145	30313	30436	46440	46440					0.03926651694678185
VESGKLFSV	9	Unmodified	_VESGKLFSV_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000529863.1_1_11:47861610-47869870:-|nuORF;nc|ENSG00000030066|Q12769-2|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2685546875	2	483.26875	964.522947	-0.59823	-0.00028911	-0.34734	-0.00016786	-0.94557	-0.00045696	483.2681973766949	37.868	0.26348	37.868	37.657	37.92	0					8	5	3	0	0	0	0.29368	1	14848	14848		43.651	5.8393	1	195970			45852	1145	30313	30436	46441	46441					0.03926651694678185
VESGLPSGDE	10	Unmodified	_VESGLPSGDE_					0	0	0		ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant;nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant	ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2259521484375	2	495.224736	988.43492	3.4241	0.0016957	-1.8046	-0.00089368	1.6195	0.00080202	495.22378675838195	16.318	0.092867	16.318	16.248	16.34	0					5	3	2	0	0	0	0.65213	1	3894	3894		27.882	1.0861	1	36984			45853	32	30314	30437	46442	46442					-0.05976013686608894
VESHIQHSL	9	Unmodified	_VESHIQHSL_					0	0	0		ZSWIM1|p.P379Lfs*20|1|0.42|ENSG00000168612|chr20:45883724-45883724|C/-|frameshift_variant;ENSG00000168612|ENST00000372523|ZSWIM1	ZSWIM1|p.P379Lfs*20|1|0.42|ENSG00000168612|chr20:45883724-45883724|C/-|frameshift_variant	ZSWIM1|p.P379Lfs*20|1|0.42|ENSG00000168612|chr20:45883724-45883724|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.272705078125	2	525.272355	1048.53016	1.8929	0.00099427	-1.3834	-0.00072667	0.50945	0.0002676	525.2717598027485	21.657	0.22798	21.657	21.564	21.792	0					8	5	2	0	0	0	0.037924	1	6926	6926		101.25	23.935	1	1042200			45854	6104	30315	30438	46443	46443					0.00783384295095857
VESHIQHSL	9	Unmodified	_VESHIQHSL_					0	0	0		ZSWIM1|p.P379Lfs*20|1|0.42|ENSG00000168612|chr20:45883724-45883724|C/-|frameshift_variant;ENSG00000168612|ENST00000372523|ZSWIM1	ZSWIM1|p.P379Lfs*20|1|0.42|ENSG00000168612|chr20:45883724-45883724|C/-|frameshift_variant	ZSWIM1|p.P379Lfs*20|1|0.42|ENSG00000168612|chr20:45883724-45883724|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2726440429688	2	525.272355	1048.53016	1.6266	0.00085441	0.31847	0.00016728	1.9451	0.0010217	525.2717666969736	21.579	0.26738	21.579	21.471	21.738	0					8	5	2	0	0	0	0.15163	1	7061	7061		67.494	14.142	1	751200			45855	6104	30315	30438	46444	46444					0.00783384295095857
VESIISPKV	9	Unmodified	_VESIISPKV_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21|p.M287Yfs*6|1|0.04|ENSG00000164754|chr8:116856244-116856245|-/A|frameshift_variant	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2926330566406	2	486.292225	970.569897	0.828	0.00040265	-1.3732	-0.00066776	-0.54516	-0.00026511	486.2919352351793	34.487	0.79507	34.487	33.989	34.784	0					45	16	3	0	0	0	0.017421	1	13118	13118		126.24	4.0666	1	690960			45856	5728	30316	30439	46445	46445					0.08343511245811897
VESINLVF	8	Unmodified	_VESINLVF_					0	0	0		ENST00000400335.8_1_22:29539276-29539381:+|nuORF	ENST00000400335.8_1_22:29539276-29539381:+|nuORF	ENST00000400335.8_1_22:29539276-29539381:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7591247558594	2	460.758018	919.501483	-0.10126	-4.6655E-05	3.4802	0.0016035	3.3789	0.0015569	460.75943258880915	32.065	0.19624	32.065	31.923	32.119	0					8	5	2	0	0	0	0.34985	1	11114	11114		76.847	0	1	42528			45857	9245	30317	30440	46446	46446					0.03851266665969888
VESITLTVVY	10	Unmodified	_VESITLTVVY_					0	0	0			REV__DMGDH|p.S276L|1|0.29|ENSG00000132837|chr5:79044471-79044471|G/A|missense_variant	REV__DMGDH|p.S276L|1|0.29|ENSG00000132837|chr5:79044471-79044471|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.3168334960938	2	562.315897	1122.61724	3.4701	0.0019513	-3.7877	-0.0021299	-0.31761	-0.0001786	562.3150080352391	29.695	0.60969	29.695	29.472	30.082	0					29	12	3	0	0	0	0.47859	1	10960	10960		47.657	7.0847	1	871900	+		45858	12716	30318	30441	46447	46447					0.060837457261413874
VESKGKRKMT	10	Unmodified	_VESKGKRKMT_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.3305053710938	2	582.33189	1162.64923	-1.7049	-0.00099281	-1.0253	-0.00059708	-2.7302	-0.0015899	582.3313730770408	25.401	0.21209	25.401	25.327	25.539	0					16	5	4	0	0	0	0.52707	1	8067	8067		42.396	3.1433	1	1028300	+		45859	12837	30319	30442	46448	46448					0.0744083492829759
VESKKKAVQRL	11	Unmodified	_VESKKKAVQRL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	429.27032470703125	3	429.269866	1284.78777	0.24197	0.00010387	0.28441	0.00012209	0.52638	0.00022596	429.26987098798963	15.547	0.13896	15.547	15.462	15.601	0					9	3	3	0	0	0	0.39337	1	4031	4031		52.167	6.2591	1	101790			45860	7636	30320	30443	46449	46449					0.15676701168263207
VESKKKAVQRL	11	Unmodified	_VESKKKAVQRL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.2699890136719	3	429.269866	1284.78777	-0.51829	-0.00022249	0.40011	0.00017175	-0.11819	-5.0734E-05	429.6045543483448	15.523	0.16614	15.523	15.434	15.6	0					5	3	2	0	0	0	0.27635	1	4261	4261		65.278	13.11	1	90919			45861	7636	30320	30443	46450	46450					0.15676701168263207
VESKPSKEM	9	Unmodified	_VESKPSKEM_					0	0	0			REV__TMEM100|p.L99Yfs*2|2|0.44|ENSG00000166292|chr17:55720775-55720775|A/-|frameshift_variant	REV__TMEM100|p.L99Yfs*2|2|0.44|ENSG00000166292|chr17:55720775-55720775|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7634887695312	2	517.762975	1033.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.667	1	25.667	25.167	26.167	0								0	0	0	0.27025	1	7747	7747		40.778	0	1		+		45862	16105	30321	30444	46451	46451					-0.004019133909878292
VESKVYAV	8	Unmodified	_VESKVYAV_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7506408691406	2	447.750193	893.485833	0.072595	3.2505E-05	0.70263	0.0003146	0.77522	0.00034711	447.75030658500253	26.306	0.13658	26.306	26.259	26.395	0					5	3	2	0	0	0	0.43813	1	9067	9067		66.429	8.618	1	35591			45863	684	30322	30445	46452	46452					0.03482980148908155
VESLLDVDTF	10	Unmodified	_VESLLDVDTF_					0	0	0			REV__FAM83H|p.G365Afs*180|1|0.14|ENSG00000180921|chr8:143728367-143728367|C/-|frameshift_variant	REV__FAM83H|p.G365Afs*180|1|0.14|ENSG00000180921|chr8:143728367-143728367|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.8610534667969	3	379.86065	1136.56012	0.82147	0.00031205	0.040726	1.547E-05	0.8622	0.00032752	379.8606893757976	26.371	1.9303	26.371	26.204	28.135	0					109	46	5	0	0	0	0.57532	1	9060	9060		41.427	41.427	1	12176000	+		45864	16828	30323	30446	46453	46453					-0.0026972155023941013
VESLLTLAH	9	Unmodified	_VESLLTLAH_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7818908691406	2	491.782025	981.549496	-0.071198	-3.5014E-05	-0.29652	-0.00014582	-0.36772	-0.00018084	491.7818461078935	30.106	0.58395	30.106	29.708	30.292	0					53	22	3	0	0	0	0.2873	1	9465	9465		51.335	9.9088	1	297030	+		45865	13326	30324	30447	46454	46454					0.05798340585988626
VESPPAEVKSH	11	Unmodified	_VESPPAEVKSH_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	590.3034057617188	2	590.303852	1178.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.489	1	23.489	22.989	23.989	0								0	0	0	0.45674	1	6808	6808		18.262	0	1		+		45866	13016	30325	30448	46455	46455					0.010999052924717034
VESPVICKI	9	Unmodified	_VESPVICKI_					0	0	0		ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;nc|ENSG00000068912|Q96DZ1-2|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	ENSG00000068912|ENST00000185150|ERLEC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.27996826171875	2	494.280803	986.547053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.663	1	38.663	38.163	39.163	0								0	0	0	0.22284	1	15220	15220		47.657	12.039	1				45867	1429	30326	30449	46456	46456					0.05324168856691358
VESSMRSR	8	Unmodified	_VESSMRSR_					0	0	0			REV__ENST00000358127.8_1_9:36839512-36839866:-|nuORF	REV__ENST00000358127.8_1_9:36839512-36839866:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2376708984375	2	476.237458	950.460364	-0.62512	-0.0002977	0.63978	0.00030469	0.014668	6.9857E-06	476.2376960522505	36.888	1.0062	36.888	36.529	37.535	0					47	20	4	0	0	0	0.44433	1	14360	14360		65.803	0	1	2291900	+		45868	18536	30327	30450	46457	46457					-0.01684817645161729
VESVVRTRTP	10	Unmodified	_VESVVRTRTP_					0	0	0			REV__nc|ENSG00000293458|O60774|FMO6P	REV__nc|ENSG00000293458|O60774|FMO6P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	572.3280639648438	2	572.327662	1142.64077	1.4695	0.00084103	-0.78919	-0.00045168	0.68029	0.00038935	572.3271577307577	18.04	0.26223	18.04	17.958	18.22	0					16	8	3	0	0	0	0.38179	1	4420	4420		37.812	15.852	1	520920	+		45869	21263	30328	30451	46458	46458					0.07515604283344146
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.7954711914062	2	525.795132	1049.57571	1.3649	0.00071766	0.47882	0.00025176	1.8437	0.00096942	525.795408366391	32.968	0.21167	32.968	32.885	33.097	0					15	9	2	0	0	0	0.22837	1	10698	10698		58.23	10.573	1	224300			45870	4199	30329	30452	46459	46459					0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.795654296875	2	525.795132	1049.57571	1.9548	0.0010279	-1.1153	-0.00058644	0.8395	0.00044141	525.7944605370068	33.264	0.36134	33.264	33.147	33.508	0					23	9	4	0	0	0	0.037924	1	12275	12275		101.25	29.375	1	1332800			45871	4199	30329	30452	46460	46460					0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7947387695312	2	525.795132	1049.57571	0.51457	0.00027056	-0.26256	-0.00013805	0.25201	0.00013251	525.7948835389734	33.028	0.23709	33.028	32.957	33.194	0					26	10	3	0	0	0	0.095583	1	11062	11062		80.455	27.518	1	236150			45872	4199	30329	30452	46461	46461					0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7950439453125	2	525.795132	1049.57571	1.77	0.00093068	-2.0884	-0.001098	-0.31831	-0.00016737	525.793892228254	33.229	0.3098	33.229	33.138	33.448	0					17	7	4	0	0	0	0.01873	1	12709	12709		124.08	51.201	1	1558100			45873	4199	30329	30452	46462	46462					0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7960815429688	2	525.795132	1049.57571	1.6593	0.00087246	0.45152	0.0002374	2.1108	0.0011099	525.795232463983	32.981	0.18305	32.981	32.9	33.083	0					8	5	2	0	0	0	0.085655	1	11538	11538		82.75	22.632	1	125870			45874	4199	30329	30452	46463	46463					0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7955932617188	2	525.795132	1049.57571	0.58675	0.00030851	0.66918	0.00035185	1.2559	0.00066036	525.7954439947401	33.206	0.35566	33.206	33.059	33.415	0					18	7	4	0	0	0	0.037924	1	12587	12587		101.25	23.935	1	1131800			45875	4199	30329	30452	46464	46464					0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.7951049804688	2	525.795132	1049.57571	1.6275	0.00085572	-2.0362	-0.0010706	-0.40875	-0.00021492	525.7937481011264	33.191	0.25657	33.191	33.091	33.348	0					14	5	4	0	0	0	0.01873	1	12602	12602		124.08	39.165	1	2435000			45876	4199	30329	30452	46465	46465					0.052906097574805244
VETAQGQRF	9	Unmodified	_VETAQGQRF_					0	0	0		ENST00000526449.1_1_11:65767491-65767878:-|nuORF;ENSG00000175376|ENST00000533544|EIF1AD	ENST00000526449.1_1_11:65767491-65767878:-|nuORF	ENST00000526449.1_1_11:65767491-65767878:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.267333984375	2	518.26453	1034.51451	3.3387	0.0017304	1.1265	0.00058384	4.4653	0.0023142	518.2650486602307	48.256	0.22683	48.256	48.106	48.333	0					18	11	2	0	0	0	0.42902	1	19169	19169		39.253	2.2244	1	153030			45877	6553	30330	30453	46466	46466					-0.001369022219478211
VETCGSNKKG	10	Unmodified	_VETCGSNKKG_					0	0	0			REV__ENSG00000145283|ENST00000273905|SLC10A6	REV__ENSG00000145283|ENST00000273905|SLC10A6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7508850097656	2	511.750398	1021.48624	1.2359	0.00063249	-0.5412	-0.00027696	0.69473	0.00035553	511.74996132412514	33.012	0.3164	33.012	32.917	33.233	0					13	7	3	0	0	0	0.23612	1	12607	12607		75.043	14.071	1	873730	+		45878	15265	30331	30454	46467	46467					-0.023639681935492263
VETEIQRV	8	Unmodified	_VETEIQRV_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.26910400390625	2	487.269281	972.52401	-1.244	-0.00060614	0.73838	0.00035979	-0.50557	-0.00024635	487.26978047142325	26.457	0.14915	26.457	26.376	26.525	0					9	5	2	0	0	0	0.39125	1	8308	8308		71.877	6.4121	1	116140			45879	3459	30332	30455	46468	46468					0.03664866063570571
VETEIQRV	8	Unmodified	_VETEIQRV_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.26904296875	2	487.269281	972.52401	0.63195	0.00030793	-0.93149	-0.00045389	-0.29954	-0.00014596	487.26924830663705	26.719	0.36768	26.719	26.46	26.828	0					14	7	3	0	0	0	0.41	1	9609	9609		69.628	12.907	1	964280			45880	3459	30332	30455	46469	46469					0.03664866063570571
VETEIQRV	8	Unmodified	_VETEIQRV_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.26904296875	2	487.269281	972.52401	-0.23139	-0.00011275	2.3836	0.0011614	2.1522	0.0010487	487.2705354392798	26.514	0.22937	26.514	26.336	26.565	0					8	5	2	0	0	0	0.28427	1	8558	8558		87.754	13.78	1	109740			45881	3459	30332	30455	46470	46470					0.03664866063570571
VETEIQRV	8	Unmodified	_VETEIQRV_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2688293457031	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.706	1	26.706	26.206	27.206	0								0	0	0	1.7419	1	9467	9467		56.721	7.2795	1				45882	3459	30332	30455	46471	46471					0.03664866063570571
VETFLHRP	8	Unmodified	_VETFLHRP_					0	0	0			REV__ENST00000513421.5_1_4:54457561-54482691:-|nuORF	REV__ENST00000513421.5_1_4:54457561-54482691:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.7760314941406	2	499.774534	997.534515	0.87721	0.00043841	2.557	0.0012779	3.4342	0.0017163	499.7755989929661	24.502	1.7403	24.502	24.343	26.084	0					63	33	2	0	0	0	0.67394	1	8573	8573		37.159	2.9866	1	2342600	+		45883	19890	30333	30456	46472	46472					0.03564893508666955
VETGHLAAF	9	Unmodified	_VETGHLAAF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.74566650390625	2	472.745442	943.476331	-0.55842	-0.00026399	-0.19876	-9.3963E-05	-0.75718	-0.00035795	472.7451347710331	34.331	0.28341	34.331	34.17	34.454	0					11	7	3	0	0	0	0.23186	1	12785	12785		57.811	9.8957	1	114380			45884	4854	30334	30457	46473	46473					0.00233211863383076
VETGHLAAF	9	Unmodified	_VETGHLAAF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2457580566406	2	472.745442	943.476331	-2.4692	-0.0011673	1.3079	0.00061832	-1.1613	-0.00054898	472.7461982718339	34.081	0.18283	34.081	34.015	34.198	0					8	5	2	0	0	0	0.43426	1	12025	12025		38.806	1.7777	1	90859			45885	4854	30334	30457	46474	46474					0.00233211863383076
VETGKDAVVM	10	Unmodified	_VETGKDAVVM_					0	0	0		MYBPC2|p.V72M|1|0.52|ENSG00000086967|chr19:50436029-50436029|G/A|missense_variant	MYBPC2|p.V72M|1|0.52|ENSG00000086967|chr19:50436029-50436029|G/A|missense_variant	MYBPC2|p.V72M|1|0.52|ENSG00000086967|chr19:50436029-50436029|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7693481445312	2	524.7708	1047.52705	0.57939	0.00030404	-0.73417	-0.00038527	-0.15479	-8.1228E-05	524.7704591012382	30.742	0.34038	30.742	30.588	30.929	0					35	12	4	0	0	0	0.56931	1	10092	10092		37.812	3.639	1	761020			45886	11392	30335	30458	46475	46475					0.005183731260558488
VETGKIVAL	9	Unmodified	_VETGKIVAL_					0	0	0		CDK20|p.E28K|1|0.25|ENSG00000156345|chr9:87974029-87974029|C/T|missense_variant	CDK20|p.E28K|1|0.25|ENSG00000156345|chr9:87974029-87974029|C/T|missense_variant	CDK20|p.E28K|1|0.25|ENSG00000156345|chr9:87974029-87974029|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2866516113281	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.387	1	39.387	38.887	39.887	0								0	0	0	0.28666	1	15490	15490		37.812	2.1932	1				45887	460	30336	30459	46476	46476					0.09219528591370363
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.26336669921875	2	450.263468	898.512382	0.030371	1.3675E-05	-0.96236	-0.00043332	-0.93199	-0.00041964	450.263162093717	24.822	0.21262	24.822	24.719	24.931	0					15	6	3	0	0	0	0.087861	1	7368	7368		82.241	23.459	1	354750			45888	5177	30337	30460	46477	46477					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.26336669921875	2	450.263468	898.512382	0.63399	0.00028546	-1.6031	-0.00072182	-0.96912	-0.00043636	450.2629810562743	25.107	0.7336	25.107	24.941	25.675	0					29	17	3	0	0	0	0.032052	1	8545	8545		107.01	35.712	1	2330600			45889	5177	30337	30460	46478	46478					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2632751464844	2	450.263468	898.512382	-1.186	-0.00053399	0.23293	0.00010488	-0.95302	-0.00042911	450.26372028239723	24.841	0.29755	24.841	24.706	25.004	0					24	10	3	0	0	0	0.048471	1	7640	7640		95.815	29.386	1	667880			45890	5177	30337	30460	46479	46479					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2633056640625	2	450.263468	898.512382	0.68066	0.00030648	-1.5843	-0.00071336	-0.90366	-0.00040689	450.26296354872034	25.098	0.5193	25.098	24.89	25.409	0					24	10	4	0	0	0	0.014688	1	8851	8851		131.03	22.944	1	2647200			45891	5177	30337	30460	46480	46480					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2631530761719	2	450.263468	898.512382	0.50584	0.00022776	-1.0153	-0.00045713	-0.50942	-0.00022937	450.26288340979835	24.927	0.24486	24.927	24.741	24.986	0					10	5	3	0	0	0	0.0406	1	7838	7838		98.629	34.422	1	137740			45892	5177	30337	30460	46481	46481					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2632751464844	2	450.263468	898.512382	-0.19283	-8.6823E-05	-0.78754	-0.0003546	-0.98036	-0.00044142	450.2632727041839	24.912	0.24114	24.912	24.771	25.012	0					14	5	3	0	0	0	0.07136	1	7830	7830		87.696	32.92	1	481870			45893	5177	30337	30460	46482	46482					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2630920410156	2	450.263468	898.512382	-2.6046	-0.0011727	1.7254	0.00077689	-0.87916	-0.00039585	450.26436642658814	24.942	0.19795	24.942	24.801	24.999	0					10	4	3	0	0	0	0.048471	1	7844	7844		95.815	29.386	1	271540			45894	5177	30337	30460	46483	46483					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.26318359375	2	450.263468	898.512382	-0.40163	-0.00018084	-0.17445	-7.8548E-05	-0.57608	-0.00025939	450.26340581579575	25.048	0.71329	25.048	24.869	25.582	0					27	14	4	0	0	0	0.0086566	1	8716	8716		143.89	56.132	1	1511200			45895	5177	30337	30460	46484	46484					0.05906669040234647
VETGVLKPG	9	Unmodified	_VETGVLKPG_					0	0	0		ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF	ENSG00000156508|ENST00000309268|EEF1A1	ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.26324462890625	2	450.263468	898.512382	0.87581	0.00039434	-2.0199	-0.00090948	-1.1441	-0.00051514	450.2628476188292	25.035	0.76256	25.035	24.854	25.616	0					27	15	2	0	0	0	0.0406	1	8708	8708		98.629	32.2	1	2703800			45896	5177	30337	30460	46485	46485					0.05906669040234647
VETLKFAKGQ	10	Unmodified	_VETLKFAKGQ_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.8201904296875	2	560.821681	1119.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.371	1	19.371	18.871	19.871	0								0	0	0	0.37602	1	5247	5247		37.812	1.3648	1				45897	1958	30338	30461	46486	46486					0.07377987540144204
VETQKTFTL	9	Unmodified	_VETQKTFTL_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;ENST00000560809.5_1_15:52557394-52562028:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.7930908203125	2	533.792589	1065.57063	1.0982	0.00058623	-0.23872	-0.00012743	0.85951	0.0004588	533.7926690191389	34.567	0.22502	34.567	34.468	34.693	0					15	9	2	0	0	0	0.27123	1	11293	11293		53.089	12.311	1	124540			45898	3564	30339	30462	46487	46487					0.04046305894848956
VETQKTFTL	9	Unmodified	_VETQKTFTL_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;ENST00000560809.5_1_15:52557394-52562028:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7923583984375	2	533.792589	1065.57063	-0.47412	-0.00025308	0.9267	0.00049467	0.45259	0.00024159	533.792989201014	34.615	0.18456	34.615	34.544	34.729	0					20	8	3	0	0	0	0.21419	1	11672	11672		59.931	8.7381	1	165010			45899	3564	30339	30462	46488	46488					0.04046305894848956
VETQKTFTL	9	Unmodified	_VETQKTFTL_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;ENST00000560809.5_1_15:52557394-52562028:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7926025390625	2	533.792589	1065.57063	1.7553	0.00093698	-1.804	-0.00096294	-0.048628	-2.5957E-05	533.7915619198956	34.839	0.31783	34.839	34.615	34.933	0					19	9	3	0	0	0	0.10821	1	13449	13449		77.533	15.842	1	952930			45900	3564	30339	30462	46489	46489					0.04046305894848956
VETQKTFTL	9	Unmodified	_VETQKTFTL_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;ENST00000560809.5_1_15:52557394-52562028:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7925415039062	2	533.792589	1065.57063	1.8074	0.00096477	-1.7362	-0.00092678	0.071183	3.7997E-05	533.791559118859	34.775	0.96141	34.775	34.522	35.484	0					30	19	3	0	0	0	0.15558	1	13373	13373		66.962	16.937	1	1236400			45901	3564	30339	30462	46490	46490					0.04046305894848956
VETVLGLIQ	9	Unmodified	_VETVLGLIQ_					0	0	0			REV__ENSG00000157600|ENST00000372068|TMEM164	REV__ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2928161621094	2	486.292225	970.569897	-0.29156	-0.00014178	0.20134	9.7912E-05	-0.090216	-4.3871E-05	486.2921013975659	34.39	0.43908	34.39	34.094	34.533	0					17	11	3	0	0	0	0.025517	1	12788	12788		113.41	19.405	1	89478	+		45902	15661	30340	30463	46491	46491					0.08343511245811897
VETVLGLIQ	9	Unmodified	_VETVLGLIQ_					0	0	0			REV__ENSG00000157600|ENST00000372068|TMEM164	REV__ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2918701171875	2	486.292225	970.569897	-1.2414	-0.0006037	-1.7729	-0.00086215	-3.0144	-0.0014659	486.2922466002785	34.064	0.38894	34.064	33.882	34.271	0					31	16	3	0	0	0	0.17854	1	11453	11453		64.207	0.901	1	60402	+		45903	15661	30340	30463	46492	46492					0.08343511245811897
VETVLGLIQ	9	Unmodified	_VETVLGLIQ_					0	0	0			REV__ENSG00000157600|ENST00000372068|TMEM164	REV__ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2919921875	2	486.292225	970.569897	-2.9133	-0.0014167	2.1874	0.0010637	-0.72589	-0.000353	486.29321132228137	34.131	0.77452	34.131	33.834	34.609	0					35	23	2	0	0	0	0.087861	1	12024	12024		82.241	15.811	1	64954	+		45904	15661	30340	30463	46493	46493					0.08343511245811897
VETVLGLIQ	9	Unmodified	_VETVLGLIQ_					0	0	0			REV__ENSG00000157600|ENST00000372068|TMEM164	REV__ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2922668457031	2	486.292225	970.569897	2.5251	0.0012279	-2.206	-0.0010728	0.31909	0.00015517	486.2906306116401	34.631	0.84304	34.631	34.021	34.864	0					36	17	4	0	0	0	0.016683	1	13132	13132		127.46	2.8674	1	573630	+		45905	15661	30340	30463	46494	46494					0.08343511245811897
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.7883911132812	2	530.787307	1059.56006	2.4262	0.0012878	-2.398	-0.0012728	0.028144	1.4938E-05	530.7866743735212	37.021	0.3273	37.021	36.902	37.23	0					20	9	3	0	0	0	0.14603	1	13996	13996		68.787	17.594	1	100020			45906	5621	30341	30464	46495	46495					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.78759765625	2	530.787307	1059.56006	0.11806	6.2663E-05	0.58727	0.00031171	0.70532	0.00037438	530.7876968537796	37.029	0.21197	37.029	36.93	37.142	0					13	6	3	0	0	0	0.03984	1	14000	14000		99.375	36.069	1	273090			45907	5621	30341	30464	46496	46496					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.7880859375	2	530.787307	1059.56006	-0.095261	-5.0563E-05	1.0918	0.00057951	0.99653	0.00052895	530.7880459312481	36.803	0.16717	36.803	36.71	36.877	0					14	9	2	0	0	0	0.26904	1	12452	12452		53.351	7.3995	1	103680			45908	5621	30341	30464	46497	46497					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.7874145507812	2	530.787307	1059.56006	1.726	0.00091613	-0.88855	-0.00047163	0.83744	0.0004445	530.7866898350818	36.978	0.36898	36.978	36.831	37.2	0					19	11	2	0	0	0	0.0090225	1	14437	14437		143.11	27.648	1	471700			45909	5621	30341	30464	46498	46498					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.7871704101562	2	530.787307	1059.56006	-1.2226	-0.00064894	1.7478	0.00092773	0.52523	0.00027878	530.788255743671	36.776	0.14693	36.776	36.719	36.866	0					14	7	3	0	0	0	0.13519	1	13167	13167		71.296	14.862	1	88297			45910	5621	30341	30464	46499	46499					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7877197265625	2	530.787307	1059.56006	1.6669	0.00088475	-1.4228	-0.00075522	0.24404	0.00012953	530.7868208527465	36.95	0.45762	36.95	36.713	37.171	0					23	9	3	0	0	0	0.0024202	1	14402	14402		172.03	70.778	1	674260			45911	5621	30341	30464	46500	46500					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.7874755859375	2	530.787307	1059.56006	3.431	0.0018211	-2.1745	-0.0011542	1.2564	0.0006669	530.785953135352	36.956	0.459	36.956	36.744	37.203	0					16	9	3	0	0	0	0.0074068	1	14393	14393		147.69	57.093	1	824390			45912	5621	30341	30464	46501	46501					0.03266323240427482
VEVAGTPSR	9	Unmodified	_VEVAGTPSR_					0	0	0			REV__nc|ENSG00000103855|Q5ZPR3-3|CD276	REV__nc|ENSG00000103855|Q5ZPR3-3|CD276	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2479248046875	2	458.248349	914.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.221	1	13.221	12.721	13.721	0								0	0	0	0.38667	1	2962	2962		14.865	0.20078	1		+		45913	13700	30342	30465	46502	46502					0.02148310375048368
VEVAIEALSAN	11	Unmodified	_VEVAIEALSAN_					0	0	0		nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.3128051757812	2	558.300778	1114.587	-0.1473	-8.2237E-05	4.198	0.0023437	4.0507	0.0022615	558.3019135977826	24.834	0.51149	24.834	24.528	25.04	0					17	10	3	0	0	0	0.70921	1	8660	8660		37.812	11.119	1	620160			45914	1383	30343	30466	46503	46503					0.034293870609417354
VEVEIQRL	8	Unmodified	_VEVEIQRL_					0	0	0		CD163|p.Y843Tfs*38|1|0.36|ENSG00000177575|chr12:7485348-7485348|A/-|frameshift_variant;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF	CD163|p.Y843Tfs*38|1|0.36|ENSG00000177575|chr12:7485348-7485348|A/-|frameshift_variant	CD163|p.Y843Tfs*38|1|0.36|ENSG00000177575|chr12:7485348-7485348|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2867736816406	2	493.287474	984.560395	0.77591	0.00038275	-2.3176	-0.0011432	-1.5417	-0.0007605	493.2864030630869	36.846	0.091187	36.846	36.784	36.875	0					4	2	2	0	0	0	0.63077	1	13935	13935		44.117	1.6423	1	40411			45915	422	30344	30467	46504	46504					0.06749742960278127
VEVEKESVL	9	Unmodified	_VEVEKESVL_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2847900390625	2	516.284597	1030.55464	1.2524	0.00064661	2.747	0.0014182	3.9994	0.0020648	516.2840370539672	31.539	0.29361	31.539	31.413	31.707	0					19	7	4	0	0	0	0.014688	1	11480	11480		131.03	37.836	1	843740			45916	5151	30345	30468	46505	46505					0.04058599657969353
VEVEKESVL	9	Unmodified	_VEVEKESVL_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.284912109375	2	516.284597	1030.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.301	1	31.301	30.801	31.801	0								0	0	0	0.072369	1	10363	10363		79.713	10.085	1				45917	5151	30345	30468	46506	46506					0.04058599657969353
VEVEKESVL	9	Unmodified	_VEVEKESVL_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2850952148438	2	516.284597	1030.55464	0.87956	0.00045411	0.00021513	1.1107E-07	0.87978	0.00045422	516.2844349898025	31.525	0.24034	31.525	31.398	31.638	0					12	5	3	0	0	0	0.13726	1	11890	11890		70.816	10.522	1	338740			45918	5151	30345	30468	46507	46507					0.04058599657969353
VEVEKESVL	9	Unmodified	_VEVEKESVL_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2841796875	2	516.284597	1030.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.305	1	31.305	30.805	31.805	0								0	0	0	0.24544	1	10762	10762		44.377	1.981	1				45919	5151	30345	30468	46508	46508					0.04058599657969353
VEVEKESVL	9	Unmodified	_VEVEKESVL_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.284912109375	2	516.284597	1030.55464	0.19154	9.889E-05	2.8201	0.001456	3.0117	0.0015549	516.2847548325444	31.482	0.3141	31.482	31.37	31.684	0					17	6	4	0	0	0	0.063171	1	11782	11782		90.601	13.283	1	698050			45920	5151	30345	30468	46509	46509					0.04058599657969353
VEVEVEVVV	9	Unmodified	_VEVEVEVVV_					0	0	0			REV__FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant	REV__FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.1917724609375	3	334.190219	999.548827	0.53832	0.0001799	3.9631	0.0013244	4.5014	0.0015043	334.1915541379657	24.138	0.26726	24.138	23.979	24.246	0					8	5	3	0	0	0	0.49003	1	8420	8420		32.812	0	1	261030	+		45921	20684	30346	30469	46510	46510					0.04903501146293365
VEVLEYQRR	9	Unmodified	_VEVLEYQRR_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.3282470703125	2	596.327662	1190.64077	0.099787	5.9506E-05	0.28388	0.00016928	0.38366	0.00022879	596.3277970675264	35.571	0.51435	35.571	35.37	35.884	0					28	14	3	0	0	0	0.48389	1	13730	13730		34.173	5.023	1	402040			45922	11572	30347	30470	46511	46511					0.053076042833026804
VEVLKNFY	8	Unmodified	_VEVLKNFY_					0	0	0			REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7773132324219	2	506.279118	1010.54368	1.2584	0.00063708	-1.3416	-0.0006792	-0.083202	-4.2124E-05	506.27865765527713	38.843	0.44385	38.843	38.729	39.173	0					21	9	3	0	0	0	0.46905	1	15402	15402		63.306	7.8021	1	446650	+		45923	21738	30348	30471	46512	46512					0.03883242074323334
VEVRPELSG	9	Unmodified	_VEVRPELSG_					0	0	0			REV__SYCE1|p.Q106Tfs*17|1|0.09|ENSG00000171772|chr10:133558170-133558171|-/T|frameshift_variant	REV__SYCE1|p.Q106Tfs*17|1|0.09|ENSG00000171772|chr10:133558170-133558171|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2691650390625	2	493.269281	984.52401	0.0035545	1.7533E-06	-0.17682	-8.7219E-05	-0.17326	-8.5466E-05	493.268944268929	24.068	0.42486	24.068	23.713	24.138	0					14	10	2	0	0	0	0.44593	1	7428	7428		23.042	0	1	90685	+		45924	16430	30349	30472	46513	46513					0.031128660635886263
VEVSIPAKL	9	Unmodified	_VEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.29473876953125	2	478.294768	954.574983	-1.4571	-0.0006969	1.3317	0.00063693	-0.12537	-5.9966E-05	478.29527576384686	39.617	0.10659	39.617	39.56	39.667	0					11	5	3	0	0	0	0.25716	1	13305	13305		54.776	1.4249	1	186270			45925	2930	30350	30473	46514	46514					0.09587815108432096
VEVSIPAKL	9	Unmodified	_VEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.29498291015625	2	478.294768	954.574983	0.86508	0.00041376	-1.2475	-0.00059667	-0.38241	-0.00018291	478.2940609320934	39.743	0.59626	39.743	39.421	40.017	0					32	13	4	0	0	0	0.026538	1	15717	15717		112.41	22.041	1	1786400			45926	2930	30350	30473	46515	46515					0.09587815108432096
VEVSIPAKL	9	Unmodified	_VEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.29461669921875	2	478.294768	954.574983	2.2525	0.0010774	-0.36295	-0.00017359	1.8896	0.00090378	478.2944882180239	39.729	0.32653	39.729	39.63	39.957	0					23	7	4	0	0	0	0.035062	1	15732	15732		104.06	5.4274	1	1100700			45927	2930	30350	30473	46516	46516					0.09587815108432096
VEVVITHL	8	Unmodified	_VEVVITHL_					0	0	0		ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2741394042969	2	455.273835	908.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.58	1	39.58	39.08	40.08	0								0	0	0	1.7419	1	15075	15075		90.777	13.93	1				45928	5034	30351	30474	46517	46517					0.07519259419893842
VEVVITHL	8	Unmodified	_VEVVITHL_					0	0	0		ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2739562988281	2	455.273835	908.533118	-0.13518	-6.1543E-05	-0.13166	-5.9939E-05	-0.26683	-0.00012148	455.27386610212653	39.519	0.12618	39.519	39.463	39.589	0					7	4	2	0	0	0	0.27512	1	15543	15543		90.777	32.965	1	149850			45929	5034	30351	30474	46518	46518					0.07519259419893842
VEVVVTKL	8	Unmodified	_VEVVVTKL_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF;LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant;LY75|p.K1412Rfs*2|4|0.39|ENSG00000054219|chr2:159816951-159816951|T/-|frameshift_variant;LY75|p.Q1410Tfs*6|1|0.07|ENSG00000054219|chr2:159816959-159816960|-/GGGTT|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.7837829589844	2	443.784036	885.553519	0.5857	0.00025992	-0.97118	-0.00043099	-0.38548	-0.00017107	443.7835685348915	35.61	0.19106	35.61	35.531	35.722	0					10	5	3	0	0	0	0.34592	1	13374	13374		77.318	21.813	1	112810			45930	1267	30352	30475	46519	46519					0.10616430079699057
VEVYKLKAE	9	Unmodified	_VEVYKLKAE_					0	0	0		AKAP9|p.A3671V|1|0.11|ENSG00000127914|chr7:92100971-92100971|C/T|missense_variant	AKAP9|p.A3671V|1|0.11|ENSG00000127914|chr7:92100971-92100971|C/T|missense_variant	AKAP9|p.A3671V|1|0.11|ENSG00000127914|chr7:92100971-92100971|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.8109130859375	2	539.810782	1077.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.617	1	28.617	28.117	29.117	0								0	0	0	0.31222	1	9245	9245		25.574	0	1				45931	108	30353	30476	46520	46520					0.0713118279156788
VEWNKKEEL	9	Unmodified	_VEWNKKEEL_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.8089599609375	2	587.808771	1173.60299	-0.38346	-0.0002254	0.52038	0.00030588	0.13692	8.0484E-05	587.8091843182592	27.679	0.2426	27.679	27.585	27.827	0					15	8	3	0	0	0	0.02953	1	8839	8839		109.48	45.271	1	391030			45932	331;4070	30354	30477	46521	46521					0.023130932978574492
VEWNKKEEL	9	Unmodified	_VEWNKKEEL_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.8091430664062	2	587.808771	1173.60299	1.4443	0.00084897	-1.7028	-0.0010009	-0.25848	-0.00015194	587.8081053779869	27.906	0.39235	27.906	27.798	28.19	0					14	8	2	0	0	0	0.0063888	1	10174	10174		152.06	41.941	1	2223400			45933	331;4070	30354	30477	46522	46522					0.023130932978574492
VEWNKKEEL	9	Unmodified	_VEWNKKEEL_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.8087158203125	2	587.808771	1173.60299	-1.7503	-0.0010288	1.8582	0.0010923	0.10793	6.3443E-05	587.809707741487	27.738	0.26209	27.738	27.645	27.907	0					11	6	3	0	0	0	0.095583	1	9120	9120		80.455	14.989	1	220150			45934	331;4070	30354	30477	46523	46523					0.023130932978574492
VEWNKKEEL	9	Unmodified	_VEWNKKEEL_					0	0	0		BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000136261|ENST00000258761|BZW2	BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	587.8092041015625	2	587.808771	1173.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.861	1	27.861	27.361	28.361	0								0	0	0	0.00038087	1	10022	10022		136.99	32.932	1				45935	331;4070	30354	30477	46524	46524					0.023130932978574492
VEWQQKAQM	9	Unmodified	_VEWQQKAQM_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	574.2830200195312	2	574.281866	1146.54918	-1.5	-0.00086141	3.7284	0.0021412	2.2285	0.0012798	574.2842142183736	29.801	0.14844	29.801	29.717	29.865	0					6	4	2	0	0	0	0.13267	1	10079	10079		71.877	16.373	1	40984			45936	4764	30355	30478	46525	46525					-0.018234024055118425
VEYQMKSVL	9	Unmodified	_VEYQMKSVL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.7891845703125	2	548.788992	1095.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.258	1	37.258	36.758	37.758	0								0	0	0	0.11963	1	12207	12207		66.962	22.585	1				45937	5298	30356	30479	46526	46526					0.019472500227720957
VEYQMKSVL	9	Unmodified	_VEYQMKSVL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.789306640625	2	548.788992	1095.56343	0.50341	0.00027627	-0.26951	-0.0001479	0.2339	0.00012836	548.7889896049442	37.56	0.39715	37.56	37.451	37.848	0					30	12	4	0	0	0	0.095583	1	14235	14235		80.455	19.483	1	650610			45938	5298	30356	30479	46527	46527					0.019472500227720957
VEYQMKSVL	9	Unmodified	_VEYQMKSVL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7894897460938	2	548.788992	1095.56343	1.7571	0.00096426	-1.3752	-0.00075468	0.38189	0.00020958	548.7883750955516	37.519	0.45938	37.519	37.36	37.819	0					35	14	4	0	0	0	0.054723	1	14693	14693		93.598	33.479	1	454450			45939	5298	30356	30479	46528	46528					0.019472500227720957
VEYQMKSVL	9	Unmodified	_VEYQMKSVL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7894897460938	2	548.788992	1095.56343	0.27162	0.00014906	0.8503	0.00046664	1.1219	0.0006157	548.7891708490811	37.518	0.24304	37.518	37.442	37.685	0					12	7	3	0	0	0	0.085655	1	14672	14672		82.75	20.643	1	153460			45940	5298	30356	30479	46529	46529					0.019472500227720957
VEYQMKSVL	9	Unmodified	_VEYQMKSVL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.7896118164062	2	548.788992	1095.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.31	1	37.31	36.81	37.81	0								0	0	0	0.14961	1	13358	13358		59.931	19.358	1				45941	5298	30356	30479	46530	46530					0.019472500227720957
VEYRGQAAY	9	Unmodified	_VEYRGQAAY_					0	0	0			REV__nc|ENSG00000137171|Q9NSK0-4|KLC4	REV__nc|ENSG00000137171|Q9NSK0-4|KLC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7593994140625	2	528.759081	1055.50361	0.71884	0.00038009	-0.1895	-0.0001002	0.52934	0.0002799	528.7588979751209	28.469	0.36526	28.469	28.359	28.724	0					16	7	3	0	0	0	0.18605	1	10328	10328		63.306	9.9548	1	647220	+		45942	14906	30357	30480	46531	46531					-0.021923045962239485
VFAEKITSL	9	Unmodified	_VFAEKITSL_					0	0	0		CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant;ENSG00000140743|ENST00000268383|CDR2	CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant	CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.29620361328125	2	504.292225	1006.5699	0.77101	0.00038882	1.5942	0.00080394	2.3652	0.0011928	504.2932979367349	39.656	0.17191	39.656	39.581	39.753	0					13	7	2	0	0	0	0.30841	1	15095	15095		49.536	8.7579	1	115590			45943	463	30358	30481	46532	46532					0.06687511245809219
VFAEKITSL	9	Unmodified	_VFAEKITSL_					0	0	0		CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant;ENSG00000140743|ENST00000268383|CDR2	CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant	CDR2|p.T201Qfs*2|1|0.34|ENSG00000140743|chr16:22347729-22347729|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2927551269531	2	504.292225	1006.5699	1.2017	0.00060602	0.54115	0.0002729	1.7429	0.00087892	504.29245447200657	39.567	0.18696	39.567	39.469	39.656	0					10	4	3	0	0	0	0.17062	1	15657	15657		65.157	22.761	1	330180			45944	463	30358	30481	46533	46533					0.06687511245809219
VFAKLHHN	8	Unmodified	_VFAKLHHN_					0	0	0		nc|ENSG00000131142|O15444-3|CCL25;ENSG00000131142|ENST00000315626|CCL25	nc|ENSG00000131142|O15444-3|CCL25	nc|ENSG00000131142|O15444-3|CCL25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2686462402344	2	483.269419	964.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.686	1	37.686	37.186	38.186	0								0	0	0	1.7419	1	14305	14305		28.254	1.4582	1				45945	3701	30359	30482	46534	46534					0.040603305740773976
VFALQQIR	8	Unmodified	_VFALQQIR_					0	0	0			REV__nc|ENSG00000164088|Q96MI6-4|PPM1M	REV__nc|ENSG00000164088|Q96MI6-4|PPM1M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7930603027344	2	487.792727	973.5709	-0.06859	-3.3458E-05	-0.25044	-0.00012216	-0.31903	-0.00015562	487.79262853777846	25.38	0.3037	25.38	25.265	25.568	0					25	11	3	0	0	0	0.74117	1	7682	7682		28.254	0.37203	1	229700	+		45946	15961	30360	30483	46535	46535					0.0830577040536582
VFALTQHTD	9	Unmodified	_VFALTQHTD_					0	0	0		nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2620239257812	2	516.261456	1030.50836	1.5232	0.00078635	-0.4112	-0.00021229	1.112	0.00057406	516.2613184661557	39.875	0.14326	39.875	39.782	39.926	0					5	3	2	0	0	0	0.39215	1	15801	15801		42.396	1.618	1	141950			45947	11579	30361	30484	46536	46536					-0.005674204534898308
VFCYGRPQGE	10	Unmodified	_VFCYGRPQGE_					0	0	0			REV__ENSG00000119446|ENST00000417201|RBM18	REV__ENSG00000119446|ENST00000417201|RBM18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.2662963867188	2	578.266216	1154.51788	1.6866	0.00097529	-0.90611	-0.00052397	0.78046	0.00045132	578.265804461183	40.006	0.13002	40.006	39.956	40.086	0					7	4	2	0	0	0	0.64178	1	15756	15756		29.15	3.5755	1	75507	+		45948	14241	30362	30485	46537	46537					-0.05319975439601876
VFDAKPSAKT	10	Unmodified	_VFDAKPSAKT_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2935180664062	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.695	1	37.695	37.195	38.195	0								0	0	0	0.40063	1	14309	14309		30.318	1.1682	1				45949	4589	30363	30486	46538	46538					0.04217725614716983
VFDQKEQA	8	Unmodified	_VFDQKEQA_					0	0	0			REV__ENST00000487002.1_1_1:155279855-155282231:+|nuORF	REV__ENST00000487002.1_1_1:155279855-155282231:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2377014160156	2	482.740357	963.46616	0.066083	3.1901E-05	-0.78544	-0.00037916	-0.71936	-0.00034726	482.740108548964	24.612	0.33287	24.612	24.462	24.795	0					13	9	2	0	0	0	0.64144	1	7249	7249		42.396	3.1433	1	74315	+		45950	15762	30364	30487	46539	46539					-0.017033958618526412
VFDRSAVIY	9	Unmodified	_VFDRSAVIY_					0	0	0			REV__ENSG00000140297|ENST00000396065|GCNT3	REV__ENSG00000140297|ENST00000396065|GCNT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.287353515625	2	535.287474	1068.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.818	1	40.818	40.318	41.318	0								0	0	0	0.30504	1	13158	13158		34.173	0	1		+		45951	15068	30365	30488	46540	46540					0.028857429603021956
VFEFEKGP	8	Unmodified	_VFEFEKGP_					0	0	0			REV__tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	REV__tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.7430419921875	2	476.742368	951.470183	-0.36209	-0.00017262	1.71	0.00081523	1.3479	0.0006426	476.7433270726143	16.616	0.25896	16.616	16.521	16.78	0					12	6	3	0	0	0	0.7126	1	4545	4545		31.955	3.7006	1	285570	+		45952	22128	30366	30489	46541	46541					-0.007493063681295098
VFFRRQEL	8	Unmodified	_VFFRRQEL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.S709Yfs*25|1|0.07|ENSG00000175054|chr3:142556093-142556094|AA/-|frameshift_variant;ATR|p.S927Qfs*4|1|0.34|ENSG00000175054|chr3:142553254-142553255|-/A|frameshift_variant;ATR|p.N1135*|1|0.36|ENSG00000175054|chr3:142542712-142542713|-/A|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.8091430664062	2	547.808908	1093.60326	0.47225	0.0002587	0.43619	0.00023895	0.90844	0.00049765	547.8092401354788	28.165	0.61136	28.165	27.953	28.564	0					36	15	3	0	0	0	0.58597	1	9891	9891		40.573	6.4001	1	520210			45953	6529	30367	30490	46542	46542					0.06020557808369631
VFFSGLFEN	9	Unmodified	_VFFSGLFEN_					0	0	0		ENSG00000244219|ENST00000431679|TMEM225B	ENSG00000244219|ENST00000431679|TMEM225B	ENSG00000244219|ENST00000431679|TMEM225B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2608642578125	2	530.260925	1058.5073	1.73	0.00091734	-0.6078	-0.00032229	1.1222	0.00059505	530.2605528110502	39.94	1.7595	39.94	39.05	40.809	0					190	65	4	0	0	0	0.48389	1	15862	15862		34.173	2.6427	1	1022300			45954	7966	30368	30491	46543	46543					-0.019616348223735258
VFGEECRSCI	10	Unmodified	_VFGEECRSCI_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1;REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant	REV__nc|ENSG00000196218|P21817-2|RYR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5036926269531	3	381.503815	1141.48961	0.62917	0.00024003	-1.4564	-0.00055563	-0.82724	-0.0003156	381.5034875118816	29.64	0.46478	29.64	29.532	29.997	0					20	9	4	0	0	0	0.52707	1	10894	10894		31.634	1.0654	1	1681900	+		45955	17234;21482	30369	30492	46544	46544					-0.07547041411180544
VFGTGAMR	8	Unmodified	_VFGTGAMR_					0	0	0		ENSG00000196329|ENST00000358647|GIMAP5;nc|ENSG00000196329|Q96F15-2|GIMAP5	ENSG00000196329|ENST00000358647|GIMAP5	ENSG00000196329|ENST00000358647|GIMAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.71600341796875	2	419.71563	837.416708	0.38329	0.00016087	0.33888	0.00014223	0.72216	0.0003031	419.7158507137267	39.393	0.27197	39.393	39.237	39.509	0					16	9	2	0	0	0	0.73426	1	15498	15498		29.15	4.9468	1	135630			45956	7349	30370	30493	46545	46545					-0.00850382351643475
VFGVARIG	8	Unmodified	_VFGVARIG_					0	0	0			REV__ARSJ|p.N431Kfs*53|1|0.24|ENSG00000180801|chr4:113902781-113902782|-/T|frameshift_variant	REV__ARSJ|p.N431Kfs*53|1|0.24|ENSG00000180801|chr4:113902781-113902782|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.74774169921875	2	409.747788	817.481023	0.99887	0.00040928	-1.892	-0.00077522	-0.89309	-0.00036594	409.7471854142848	36.511	0.22787	36.511	36.419	36.647	0					10	6	2	0	0	0	0.55361	1	13785	13785		54.765	0	1	36839	+		45957	12229	30371	30494	46546	46546					0.06498140796804819
VFHAYGGS	8	Unmodified	_VFHAYGGS_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	419.1982727050781	2	419.198128	836.381703	-1.3252	-0.00055554	0.68832	0.00028854	-0.63693	-0.000267	419.19852202163673	22.696	0.14573	22.696	22.63	22.776	0					8	5	2	0	0	0	0.74117	1	6728	6728		28.254	1.4582	1	61264			45958	2135	30372	30495	46547	46547					-0.04303301887944144
VFHDQLHTF	9	Unmodified	_VFHDQLHTF_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.283447265625	2	572.282723	1142.55089	1.7371	0.0009941	-1.4252	-0.00081563	0.31186	0.00017847	572.2818153903745	31.837	0.25295	31.837	31.735	31.988	0					11	6	2	0	0	0	0.24334	1	11637	11637		56.434	15.007	1	95057			45959	2062	30373	30496	46548	46548					-0.014680253252663533
VFHDQLHTF	9	Unmodified	_VFHDQLHTF_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.2833251953125	2	572.282723	1142.55089	0.9145	0.00052335	0.40127	0.00022964	1.3158	0.00075299	572.2830168209038	31.818	0.20989	31.818	31.719	31.928	0					6	4	2	0	0	0	0.15163	1	12046	12046		67.494	26.067	1	82122			45960	2062	30373	30496	46549	46549					-0.014680253252663533
VFHDQLHTF	9	Unmodified	_VFHDQLHTF_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.85748291015625	3	381.857574	1142.55089	-0.52631	-0.00020098	0.31034	0.00011851	-0.21598	-8.2472E-05	381.85766693923046	31.777	0.41823	31.777	31.667	32.085	0					14	8	3	0	0	0	0.12239	1	11926	11926		101.25	66.074	1	460570			45961	2062	30373	30496	46550	46550					-0.014680253252663533
VFHDQLHTF	9	Unmodified	_VFHDQLHTF_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.282958984375	2	572.282723	1142.55089	0.16867	9.6527E-05	0.22856	0.0001308	0.39723	0.00022733	572.2827520435956	31.777	0.26812	31.777	31.667	31.935	0					8	5	2	0	0	0	0.12834	1	11927	11927		72.879	18.103	1	290160			45962	2062	30373	30496	46551	46551					-0.014680253252663533
VFHIHNESW	9	Unmodified	_VFHIHNESW_					0	0	0		ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	390.1893005371094	3	390.189324	1167.54614	0.49136	0.00019172	-0.86524	-0.00033761	-0.37388	-0.00014588	390.18906430628783	25.005	1.5527	25.005	24.899	26.451	0					61	29	4	0	0	0	0.27249	1	8710	8710		52.937	6.4799	1	1377700			45963	260;1784	30374	30497	46552	46552					-0.03092909468000471
VFHVDAVL	8	Unmodified	_VFHVDAVL_					0	0	0			REV__ENST00000412176.1_1_1:24228945-24229221:-|nuORF	REV__ENST00000412176.1_1_1:24228945-24229221:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.253173828125	2	450.252903	898.491253	-0.48045	-0.00021632	0.54452	0.00024517	0.06407	2.8848E-05	450.2532115267715	37.067	0.10784	37.067	36.996	37.104	0					6	3	2	0	0	0	0.61433	1	14030	14030		46.766	0	1	153090	+		45964	19009	30375	30498	46553	46553					0.03794703731375648
VFICRLIC	8	Unmodified	_VFICRLIC_					0	0	0		ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENST00000477377.1_1_13:76104099-76111947:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.84661865234375	3	322.846965	965.519064	0.55849	0.00018031	-1.5507	-0.00050064	-0.99222	-0.00032034	322.84642252352984	22.736	0.21713	22.736	22.628	22.845	0					8	4	2	0	0	0	0.66238	1	7748	7748		31.955	0	1	841760			45965	9922	30376	30499	46554	46554					0.03492567395608148
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.3006591796875	2	539.300581	1076.58661	0.89975	0.00048524	-0.34729	-0.00018729	0.55246	0.00029794	539.300384833342	33.56	0.35545	33.56	33.424	33.779	0					34	13	4	0	0	0	0.0088974	1	10916	10916		143.37	50.178	1	1942100			45966	4866;1233	30377	30500	46555	46555					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.3006591796875	2	539.300581	1076.58661	0.25265	0.00013626	0.49287	0.0002658	0.74552	0.00040206	539.3008141075373	33.8	0.61316	33.8	33.568	34.181	0					43	16	4	0	0	0	0.0055674	1	12529	12529		155.58	45.465	1	9121100			45967	4866;1233	30377	30500	46556	46556					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.30078125	2	539.300581	1076.58661	-0.12836	-6.9226E-05	0.90542	0.00048829	0.77706	0.00041907	539.3010118209087	33.599	0.38051	33.599	33.461	33.842	0					41	14	4	0	0	0	0.02953	1	11268	11268		109.48	32.161	1	2086900			45968	4866;1233	30377	30500	46557	46557					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3012084960938	2	539.300581	1076.58661	1.9442	0.0010485	-1.2014	-0.00064791	0.74283	0.00040061	539.2998737757399	33.805	0.58013	33.805	33.605	34.185	0					33	14	4	0	0	0	0.0088974	1	12959	12959		143.37	38.627	1	11871000			45969	4866;1233	30377	30500	46558	46558					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.301513671875	2	539.300581	1076.58661	1.0159	0.0005479	0.14281	7.702E-05	1.1588	0.00062492	539.3006534469887	33.572	0.37247	33.572	33.35	33.722	0					17	10	3	0	0	0	0.040209	1	11792	11792		99.013	23.97	1	714110			45970	4866;1233	30377	30500	46559	46559					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3009643554688	2	539.300581	1076.58661	2.0677	0.0011151	-1.551	-0.00083643	0.51673	0.00027867	539.2997228487262	33.774	0.37427	33.774	33.583	33.957	0					21	8	3	0	0	0	0.029571	1	12846	12846		109.44	21.742	1	5685800			45971	4866;1233	30377	30500	46560	46560					0.05138012131760661
VFIPSALAAI	10	Unmodified	_VFIPSALAAI_					0	0	0		ENST00000482868.1_1_9:111798484-111800393:-|nuORF;nc|ENSG00000106771|Q9H330-3|TMEM245;ENSG00000106771|ENST00000374586|TMEM245	ENST00000482868.1_1_9:111798484-111800393:-|nuORF	ENST00000482868.1_1_9:111798484-111800393:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3052978515625	2	501.305136	1000.59572	0.67502	0.00033839	-0.18126	-9.0865E-05	0.49376	0.00024753	501.305141747008	45.158	0.11868	45.158	45.123	45.242	0					10	7	2	0	0	0	0.4758	1	16844	16844		44.117	0	1	74598			45972	2458	30378	30501	46561	46561					0.09544405488077246
VFIQTDKPV	9	Unmodified	_VFIQTDKPV_					0	0	0		CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8;CPAMD8|p.H593Lfs*4|1|0.13|ENSG00000160111|chr19:16977489-16977489|T/-|frameshift_variant;CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant;CPAMD8|p.H1052Ifs*127|3|0.34|ENSG00000160111|chr19:16929074-16929074|C/-|frameshift_variant	CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	349.53326416015625	3	349.534209	1045.5808	0.51137	0.00017874	-2.0901	-0.00073058	-1.5788	-0.00055183	349.5331170141005	27.047	0.20835	27.047	26.895	27.104	0					5	4	2	0	0	0	0.57706	1	9766	9766		24.519	1.4767	1	193030			45973	679	30379	30502	46562	46562					0.059829136200733046
VFKACPGL	8	Unmodified	_VFKACPGL_					0	0	0			REV__GPR137|p.H359Pfs*4|1|0.06|ENSG00000173264|chr11:64289182-64289183|-/C|frameshift_variant	REV__GPR137|p.H359Pfs*4|1|0.06|ENSG00000173264|chr11:64289182-64289183|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.72845458984375	2	417.730749	833.446945	-2.4316	-0.0010157	-2.7665	-0.0011556	-5.1981	-0.0021714	417.7295844970455	24.381	0.17619	24.381	24.29	24.467	0					6	4	2	0	0	0	0.61433	1	7599	7599		46.766	2.6496	1	244210	+		45974	20699	30380	30503	46563	46563					0.023559763135381218
VFKPISSTW	9	Unmodified	_VFKPISSTW_					0	0	0		BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.792724609375	2	532.792392	1063.57023	1.7203	0.00091654	-0.64871	-0.00034563	1.0715	0.00057091	532.7921508672611	41.081	0.28147	41.081	40.922	41.203	0					20	10	3	0	0	0	0.21263	1	16139	16139		60.118	4.6141	1	212420			45975	301	30381	30504	46564	46564					0.04098930965665204
VFKPISSTW	9	Unmodified	_VFKPISSTW_					0	0	0		BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.79248046875	2	532.792392	1063.57023	1.7639	0.00093981	3.1993	0.0017046	4.9632	0.0026444	532.7939973461373	41.274	0.52357	41.274	40.926	41.449	0					32	12	4	0	0	0	0.021961	1	16299	16299		118.74	28.373	1	664760			45976	301	30381	30504	46565	46565					0.04098930965665204
VFKRGKWK	8	Unmodified	_VFKRGKWK_					0	0	0		tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.8241577148438	2	524.824361	1047.63417	-1.2538	-0.00065801	0.84963	0.00044591	-0.40415	-0.00021211	524.8247215080376	38.338	0.23528	38.338	38.251	38.486	0					30	11	3	0	0	0	0.76283	1	13702	13702		25.45	25.45	1	591330			45977	22632	30382	30505	46566	46566					0.1122575591327859
VFLDHNAL	8	Unmodified	_VFLDHNAL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.7471008300781	2	464.747985	927.481417	-0.68952	-0.00032046	-0.18351	-8.5288E-05	-0.87304	-0.00040574	464.7476868078138	37.635	0.18361	37.635	37.552	37.736	0					8	5	2	0	0	0	0.61938	1	14288	14288		45.952	1.8352	1	90112			45978	5352	30383	30506	46567	46567					0.01477515725991907
VFLDTTLTY	9	Unmodified	_VFLDTTLTY_					0	0	0		ENST00000587743.1_1_17:74553936-74554101:+|nuORF	ENST00000587743.1_1_17:74553936-74554101:+|nuORF	ENST00000587743.1_1_17:74553936-74554101:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.7828979492188	2	536.78169	1071.54883	1.9521	0.0010479	0.043923	2.3577E-05	1.996	0.0010714	536.7816934843124	45.889	0.84916	45.889	45.75	46.599	0					93	39	4	0	0	0	0.25109	1	18353	18353		55.504	55.504	1	1757600			45979	10913	30384	30507	46568	46568					0.01591501146299379
VFLENVIR	8	Unmodified	_VFLENVIR_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	495.2919616699219	2	495.292559	988.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.261	1	42.261	41.761	42.761	0								0	0	0	1.7419	1	13946	13946		62.107	5.3864	1				45980	5259	30385	30508	46569	46569					0.07582350685527217
VFLLEPEL	8	Unmodified	_VFLLEPEL_					0	0	0		nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;nc|ENSG00000159322|Q9BRR6-6|ADPGK	nc|ENSG00000159322|Q9BRR6-2|ADPGK	nc|ENSG00000159322|Q9BRR6-2|ADPGK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.27410888671875	2	480.276044	958.537535	-0.11095	-5.3284E-05	-3.2957	-0.0015828	-3.4066	-0.0016361	480.27416580338354	28.757	0.11689	28.757	28.678	28.795	0					4	2	2	0	0	0	0.57802	1	10579	10579		52.299	0	1	79639			45981	5307	30386	30509	46570	46570					0.056607238428114215
VFLPKDVAL	9	Unmodified	_VFLPKDVAL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.30499267578125	2	501.305136	1000.59572	0.93578	0.00046911	-0.28322	-0.00014198	0.65256	0.00032713	501.30495719834073	45.172	0.24145	45.172	45.032	45.273	0					22	14	2	0	0	0	0.22837	1	17496	17496		42.396	0	1	192460			45982	1919	30387	30510	46571	46571					0.09544405488077246
VFLPKDVAL	9	Unmodified	_VFLPKDVAL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.3049011230469	2	501.305136	1000.59572	1.118	0.00056046	-0.94576	-0.00047412	0.17224	8.6344E-05	501.30458148768247	45.086	0.27546	45.086	45.015	45.29	0					23	12	2	0	0	0	0.12834	1	18067	18067		56.721	1.2168	1	336380			45983	1919	30387	30510	46572	46572					0.09544405488077246
VFLQPAPQ	8	Unmodified	_VFLQPAPQ_					0	0	0			REV__ENST00000472524.1_1_11:64122844-64124563:+|nuORF	REV__ENST00000472524.1_1_11:64122844-64124563:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2529296875	2	450.252903	898.491253	0.67977	0.00030607	-1.3636	-0.00061397	-0.68384	-0.0003079	450.25236578198536	37.034	0.1643	37.034	36.962	37.127	0					13	5	3	0	0	0	0.59411	1	14465	14465		50.025	7.5501	1	180040	+		45984	19493	30388	30511	46573	46573					0.037947037313642795
VFLQPAPQ	8	Unmodified	_VFLQPAPQ_					0	0	0			REV__ENST00000472524.1_1_11:64122844-64124563:+|nuORF	REV__ENST00000472524.1_1_11:64122844-64124563:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.2524719238281	2	450.252903	898.491253	0.87579	0.00039433	-1.8003	-0.00081058	-0.92449	-0.00041626	450.25212056094443	36.969	0.20555	36.969	36.863	37.068	0					10	4	3	0	0	0	0.57802	1	14423	14423		52.299	0	1	341120	+		45985	19493	30388	30511	46574	46574					0.037947037313642795
VFLSLLPLNFF	11	Unmodified	_VFLSLLPLNFF_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	655.3824462890625	2	655.381374	1308.7482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.911	1	54.911	54.411	55.411	0								0	0	0	0.42265	1	16064	16064		36.447	21.114	1				45986	17	30389	30512	46575	46575					0.10617181164843714
VFLVVGSLGAL	11	Unmodified	_VFLVVGSLGAL_					0	0	0			REV__ENSG00000253958|ENST00000519106|CLDN23	REV__ENSG00000253958|ENST00000519106|CLDN23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.83349609375	2	537.831517	1073.64848	2.0731	0.001115	1.6511	0.000888	3.7242	0.002003	537.8324163711366	35.156	0.24337	35.156	35.074	35.317	0					9	6	2	0	0	0	0.3828	1	13172	13172		53.351	5.3919	1	152820	+		45987	17741	30390	30513	46576	46576					0.11460363550895636
VFMPQHIMA	9	Unmodified	_VFMPQHIMA_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.26904296875	2	537.267173	1072.51979	3.3436	0.0017964	0.36849	0.00019798	3.7121	0.0019944	537.2673213974728	39.121	2.5636	39.121	38.055	40.619	0					169	56	4	0	0	0	0.47428	1	16019	16019		35.201	35.201	1	2285500			45988	5790	30391	30514	46577	46577					-0.01356637955336737
VFNKKSSVV	9	Unmodified	_VFNKKSSVV_					0	0	0			REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.2978820800781	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.093	1	28.093	27.593	28.593	0								0	0	0	0.28164	1	9022	9022		38.806	4.6336	1		+		45989	21471	30392	30515	46578	46578					0.07810333339955378
VFNLPQLLE	9	Unmodified	_VFNLPQLLE_					0	0	0			REV__ENSG00000120820|ENST00000360814|GLT8D2	REV__ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.8038940429688	2	536.8055	1071.59645	-1.4078	-0.0007557	-1.1378	-0.00061079	-2.5456	-0.0013665	536.8048331619492	38.71	0.23073	38.71	38.637	38.867	0					30	12	3	0	0	0	0.37197	1	13825	13825		44.117	1.2525	1	1071900	+		45990	14298	30393	30516	46579	46579					0.06351200137146407
VFNLTNIF	8	Unmodified	_VFNLTNIF_					0	0	0			REV__nc|ENSG00000197603|Q9H799|CPLANE1	REV__nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.2669982910156	2	484.26601	966.517468	0.012669	6.1354E-06	0.87642	0.00042442	0.88909	0.00043056	484.2664121597159	41.296	0.19766	41.296	41.185	41.382	0					22	12	2	0	0	0	0.66372	1	13239	13239		38.806	0.99462	1	59100	+		45991	17347	30394	30517	46580	46580					0.03286972902844809
VFNPYNNRK	9	Unmodified	_VFNPYNNRK_					0	0	0		PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.3031005859375	2	576.301447	1150.58834	3.3	0.0019018	-0.63519	-0.00036606	2.6648	0.0015357	576.3012910432795	12.91	0.45552	12.91	12.64	13.095	0					18	10	3	0	0	0	0.53083	1	2857	2857		29.15	4.6304	1	693130			45992	3502	30395	30518	46581	46581					0.019070659403496393
VFNVIYQSAA	10	Unmodified	_VFNVIYQSAA_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000568591.5_1_16:2156634-2167660:-|nuORF;ENST00000525846.6_1_16:18437791-18443539:-|nuORF;ENST00000536260.5_1_16:16412841-16418555:+|nuORF;ENST00000458669.1_1_16:16412841-16418244:+|nuORF;ENST00000565639.6_1_16:2156945-2164479:-|nuORF;ENST00000472413.5_1_16:15016937-15019904:+|nuORF;ENST00000483731.5_1_16:2156634-2163846:-|nuORF;ENST00000534164.5_1_16:15014190-15019904:+|nuORF	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.2906494140625	2	556.292756	1110.57096	-0.99094	-0.00055125	-1.9583	-0.0010894	-2.9492	-0.0016406	556.7927190926661	33.364	0.10248	33.364	33.28	33.382	0					5	3	2	0	0	0	0.55603	1	11702	11702		39.253	1.4413	1	27908			45993	1020	30396	30519	46582	46582					0.02009725614720992
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.26123046875	2	530.260925	1058.5073	1.73	0.00091734	-0.6078	-0.00032229	1.1222	0.00059505	530.2605528110502	39.94	1.7595	39.94	39.05	40.809	0					190	65	4	0	0	0	0.35021	1	15563	15563		45.972	45.972	1	1022300			45994	2951	30397	30520	46583	46583					-0.019616348223962632
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.26123046875	2	530.260925	1058.5073	1.6471	0.00087341	-0.53258	-0.00028241	1.1146	0.00059101	530.2606144257438	39.915	2.3018	39.915	38.729	41.03	0					164	49	5	0	0	0	0.38666	2	15777	15447;15777		42.864	6.4175	1	2372700			45995	2951	30397	30520	46584;46585	46585					-0.019616348223962632
VFPKEESH	8	Unmodified	_VFPKEESH_					0	0	0			REV__ZNF337|p.C518Lfs*33|1|0.34|ENSG00000130684|chr20:25675737-25675738|-/A|frameshift_variant	REV__ZNF337|p.C518Lfs*33|1|0.34|ENSG00000130684|chr20:25675737-25675738|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.7431335449219	2	486.742899	971.471246	-0.044449	-2.1635E-05	-0.30921	-0.00015051	-0.35366	-0.00017214	486.7427259570649	28.156	0.25135	28.156	28.065	28.316	0					18	8	3	0	0	0	0.37378	1	8798	8798		73.975	4.3471	1	231310	+		45996	14591	30398	30521	46586	46586					-0.01563091999230437
VFPLAYFPL	9	Unmodified	_VFPLAYFPL_					0	0	0			REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9	REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.8005981445312	2	533.802229	1065.5899	-0.46479	-0.00024811	-1.9107	-0.0010199	-2.3755	-0.001268	533.80110951403	38.821	0.14692	38.821	38.744	38.891	0					11	8	2	0	0	0	0.43174	1	13072	13072		39.021	0.21535	1	84053	+		45997	14833	30399	30522	46587	46587					0.05973306976420645
VFPPYVLR	8	Unmodified	_VFPPYVLR_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1;DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.79180908203125	2	495.792195	989.569838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.275	1	42.275	41.775	42.775	0								0	0	0	1.7419	1	14789	14789		35.201	6.9464	1				45998	2057	30400	30523	46588	46588					0.0746355603646407
VFPSASSKIL	10	Unmodified	_VFPSASSKIL_					0	0	0			REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF	REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.8062744140625	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.774	1	44.774	44.274	45.274	0								0	0	0	0.29806	1	17937	17937		51.193	3.2771	1		+		45999	18708	30401	30524	46589	46589					0.07455200137133033
VFQAPAPD	8	Unmodified	_VFQAPAPD_					0	0	0		MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant;MEGF8|p.T1670Qfs*60|3|0.4|ENSG00000105429|chr19:42357575-42357575|C/-|frameshift_variant;MEGF8|p.G1586Dfs*144|1|0.39|ENSG00000105429|chr19:42356903-42356903|G/-|frameshift_variant;MEGF8|p.G1861Efs*10|1|0.13|ENSG00000105429|chr19:42360864-42360864|G/-|frameshift_variant;MEGF8|p.R1953Pfs*3|1|0.19|ENSG00000105429|chr19:42362390-42362391|-/C|frameshift_variant;MEGF8|p.G2143Afs*20|2|0.22|ENSG00000105429|chr19:42368603-42368603|G/-|frameshift_variant;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	422.71356201171875	2	422.713611	843.412668	0.37773	0.00015967	-0.48668	-0.00020573	-0.10895	-4.6055E-05	422.7132969413483	29.495	0.24906	29.495	29.35	29.599	0					11	5	3	0	0	0	0.49887	1	10914	10914		60.294	60.294	1	548100			46000	2359	30402	30525	46590	46590					-0.015301485737268194
VFQEHQTL	8	Unmodified	_VFQEHQTL_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2558288574219	2	501.256174	1000.49779	-0.045157	-2.2635E-05	0.65528	0.00032846	0.61012	0.00030583	501.25608462621676	27.301	0.33209	27.301	27.201	27.533	0					34	12	4	0	0	0	0.53424	1	8381	8381		56.721	5.3856	1	562730			46001	1733	30403	30526	46591	46591					-0.0024340310790194053
VFQEHQTL	8	Unmodified	_VFQEHQTL_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.2559509277344	2	501.256174	1000.49779	-0.10638	-5.3325E-05	1.3541	0.00067874	1.2477	0.00062541	501.25602740339696	27.538	0.46687	27.538	27.366	27.833	0					41	11	6	0	0	0	0.23895	1	9636	9636		134.81	30.064	1	3171200			46002	1733	30403	30526	46592	46592					-0.0024340310790194053
VFQEHQTL	8	Unmodified	_VFQEHQTL_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2560119628906	2	501.256174	1000.49779	-1.0342	-0.00051842	0.91285	0.00045757	-0.12139	-6.0847E-05	501.2565814570729	27.325	0.22991	27.325	27.238	27.468	0					19	8	3	0	0	0	0.2678	1	8684	8684		93.195	39.844	1	500060			46003	1733	30403	30526	46593	46593					-0.0024340310790194053
VFQEHQTL	8	Unmodified	_VFQEHQTL_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.25592041015625	2	501.256174	1000.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.529	1	27.529	27.029	28.029	0								0	0	0	1.7419	1	9984	9984		104.75	22.442	1				46004	1733	30403	30526	46594	46594					-0.0024340310790194053
VFQEHQTL	8	Unmodified	_VFQEHQTL_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.2558898925781	2	501.256174	1000.49779	-2.1086	-0.0010569	2.2783	0.001142	0.16973	8.5077E-05	501.25716457656387	27.374	0.25683	27.374	27.279	27.536	0					14	6	3	0	0	0	0.3049	1	8950	8950		82.241	5.4664	1	284540			46005	1733	30403	30526	46595	46595					-0.0024340310790194053
VFQEHQTL	8	Unmodified	_VFQEHQTL_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.25604248046875	2	501.256174	1000.49779	2.9234	0.0014654	-2.6605	-0.0013336	0.26288	0.00013177	501.25453660519463	27.534	0.42273	27.534	27.323	27.746	0					17	8	3	0	0	0	0.23144	1	9856	9856		122.18	39.935	1	1693200			46006	1733	30403	30526	46596	46596					-0.0024340310790194053
VFQQFDLEPS	10	Unmodified	_VFQQFDLEPS_					0	0	0		ENST00000536092.1_12:7243942-7244984:-|nuORF;C1R|p.P100Rfs*15|1|0.13|ENSG00000159403|chr12:7090181-7090181|G/-|frameshift_variant;ENST00000545466.1_12:7242646-7244984:-|nuORF;ENST00000540394.2_12:7241870-7244269:-|nuORF;C1R|p.P216Lfs*100|5|0.33|ENSG00000159403|chr12:7089414-7089414|G/-|frameshift_variant;nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	ENST00000536092.1_12:7243942-7244984:-|nuORF	ENST00000536092.1_12:7243942-7244984:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.2921142578125	2	605.292953	1208.57135	0.14989	9.0725E-05	-3.2009	-0.0019375	-3.051	-0.0018468	605.7917859199318	32.263	0.10596	32.263	32.189	32.295	0					7	5	2	0	0	0	0.67098	1	10421	10421		25.574	0.44807	1	42758			46007	334	30404	30527	46597	46597					-0.024588994560645006
VFRGQELAF	9	Unmodified	_VFRGQELAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF;ENST00000434365.1_1_X:114938170-114938437:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.2921752929688	2	533.787641	1065.56073	1.7667	0.00094303	0.45863	0.00024481	2.2253	0.0011878	534.2900592634189	39.749	0.63074	39.749	39.456	40.086	0					70	22	4	0	0	0	0.5879	1	15578	15578		23.042	0	1	277840			46008	8013	30405	30528	46598	46598					0.030571626801247476
VFRIPGCRF	9	Unmodified	_VFRIPGCRF_					0	0	0		DHX16|p.R575C|1|0.38|ENSG00000204560|chr6:30660064-30660064|G/A|missense_variant	DHX16|p.R575C|1|0.38|ENSG00000204560|chr6:30660064-30660064|G/A|missense_variant	DHX16|p.R575C|1|0.38|ENSG00000204560|chr6:30660064-30660064|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.7982177734375	2	547.800029	1093.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.426	1	42.426	41.926	42.926	0								0	0	0	0.28164	1	13985	13985		38.806	0.99462	1				46009	783	30406	30529	46599	46599					0.04245519281880661
VFRVGSVL	8	Unmodified	_VFRVGSVL_					0	0	0		nc|ENSG00000073578|P31040-3|SDHA;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA;ENST00000505555.5_1_5:218470-251793:+|nuORF;ENST00000509082.1_1_5:240570-256462:+|nuORF;ENST00000515467.2_1_5:1572396-1576767:-|nuORF;ENST00000503674.5_1_5:250762-256532:+|nuORF;ENST00000515752.5_1_5:236500-256532:+|nuORF	nc|ENSG00000073578|P31040-3|SDHA	nc|ENSG00000073578|P31040-3|SDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	438.7684020996094	2	438.76872	875.522887	0.65558	0.00028765	-1.2236	-0.00053689	-0.56806	-0.00024925	438.7681673523518	40.955	0.2157	40.955	40.804	41.02	0					7	4	2	0	0	0	0.32815	1	16099	16099		79.451	19.157	1	102580			46010	1512	30407	30530	46600	46600					0.0801469648533839
VFRVGSVL	8	Unmodified	_VFRVGSVL_					0	0	0		nc|ENSG00000073578|P31040-3|SDHA;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA;ENST00000505555.5_1_5:218470-251793:+|nuORF;ENST00000509082.1_1_5:240570-256462:+|nuORF;ENST00000515467.2_1_5:1572396-1576767:-|nuORF;ENST00000503674.5_1_5:250762-256532:+|nuORF;ENST00000515752.5_1_5:236500-256532:+|nuORF	nc|ENSG00000073578|P31040-3|SDHA	nc|ENSG00000073578|P31040-3|SDHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.7684631347656	2	438.76872	875.522887	0.67377	0.00029563	-0.88755	-0.00038943	-0.21378	-9.3799E-05	438.76823491072633	40.884	0.28229	40.884	40.748	41.03	0					6	4	2	0	0	0	0.28427	1	16239	16239		87.754	32.99	1	192380			46011	1512	30407	30530	46601	46601					0.0801469648533839
VFRVSSSL	8	Unmodified	_VFRVSSSL_					0	0	0		nc|ENSG00000198464|Q8WV37-3|ZNF480;nc|ENSG00000198464|Q8WV37-2|ZNF480;ENSG00000198464|ENST00000595962|ZNF480;ENST00000599581.5_1_19:52786637-52794448:+|nuORF;ZNF534|p.R421Gfs*23|1|0.32|ENSG00000198633|chr19:52438676-52438676|G/-|frameshift_variant;ENSG00000196214|ENST00000439461|ZNF766;ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534	nc|ENSG00000198464|Q8WV37-3|ZNF480	nc|ENSG00000198464|Q8WV37-3|ZNF480	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7556457519531	2	447.75581	893.497067	0.61985	0.00027754	-1.1708	-0.00052423	-0.55094	-0.00024669	447.7553275897322	34.536	0.28098	34.536	34.454	34.735	0					13	7	2	0	0	0	0.22624	1	13330	13330		125.81	17.727	1	306980			46012	7563	30408	30531	46602	46602					0.04605802243054313
VFSCGPPGMTK	11	Carbamidomethyl (C)	_VFSC(Carbamidomethyl (C))GPPGMTK_	VFSC(1)GPPGMTK		VFSC(89)GPPGMTK		0	1	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	590.7786254882812	2	590.778102	1179.54165	3.181	0.0018793	-1.746	-0.0010315	1.435	0.00084777	590.7776380812769	37.045	0.70624	37.045	36.744	37.45	0					34	14	4	0	0	0	0.10275	1	14417	14417		89.029	9.3162	1	764260			46013	4374;4202	30409	30532	46603	46603	181				-0.040938779974567296
VFSHNHKLI	9	Unmodified	_VFSHNHKLI_					0	0	0		ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2	ENST00000472059.5_1_17:19558694-19578882:+|nuORF	ENST00000472059.5_1_17:19558694-19578882:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	365.5418395996094	3	365.541697	1093.60326	-0.97548	-0.00035658	0.9472	0.00034624	-0.028282	-1.0338E-05	365.5420296414557	27.936	0.36419	27.936	27.762	28.126	0					30	13	3	0	0	0	0.60749	1	8929	8929		20.947	0.95016	1	192210			46014	1487	30410	30533	46604	46604					0.06020557808369631
VFSKQLHTN	9	Unmodified	_VFSKQLHTN_					0	0	0			REV__BLM|p.N515Mfs*16|2|0.38|ENSG00000197299|chr15:90760909-90760909|A/-|frameshift_variant	REV__BLM|p.N515Mfs*16|2|0.38|ENSG00000197299|chr15:90760909-90760909|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2930908203125	2	537.290548	1072.56654	3.3429	0.0017961	1.028	0.00055231	4.3709	0.0023484	537.29092325077	38.343	0.59123	38.343	38.186	38.778	0					34	12	3	0	0	0	0.40353	1	15057	15057		26.693	0	1	667370	+		46015	12288	30411	30534	46605	46605					0.03316261191821468
VFSLGSVISN	10	Unmodified	_VFSLGSVISN_					0	0	0		nc|ENSG00000135226|Q9BY64-2|UGT2B28;ENSG00000213759|ENST00000446444|UGT2B11;ENSG00000135226|ENST00000335568|UGT2B28	nc|ENSG00000135226|Q9BY64-2|UGT2B28	nc|ENSG00000135226|Q9BY64-2|UGT2B28	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.77935791015625	2	511.779482	1021.54441	3.1047	0.0015889	-2.9913	-0.0015309	0.11338	5.8023E-05	511.77801527621233	37.391	0.69987	37.391	37.137	37.837	0					25	14	3	0	0	0	0.54197	1	14629	14629		40.778	1.5253	1	380160			46016	3974	30412	30535	46606	46606					0.034500367233931684
VFSSEKNGSF	10	Unmodified	_VFSSEKNGSF_					0	0	0			REV__tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	REV__tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.26806640625	2	551.264196	1100.51384	3.706	0.002043	2.9873	0.0016468	6.6934	0.0036898	551.2662261765397	38.294	1.7817	38.294	37.821	39.602	0					75	38	5	0	0	0	0.14393	1	15053	15053		87.754	2.8388	1	1134500	+		46017	21933	30413	30536	46607	46607					-0.032397416616504415
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7955322265625	2	524.794935	1047.57532	1.6264	0.00085352	-1.6794	-0.00088132	-0.052968	-2.7797E-05	524.7945878306821	49.627	0.095509	49.627	49.59	49.686	0					6	4	2	0	0	0	0.14734	1	19625	19625		68.485	34.312	1	36007			46018	2780	30414	30537	46608	46608					0.05343234828274035
VFSYGLQPY	9	Unmodified	_VFSYGLQPY_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2694702148438	2	537.26875	1072.52295	1.0339	0.00055549	0.61487	0.00033035	1.6488	0.00088584	537.268990728858	38.826	0.61947	38.826	38.237	38.857	0					50	31	2	0	0	0	0.45358	1	13768	13768		37.159	8.9048	1	107140			46019	6146	30415	30538	46609	46609					-0.010413483053298478
VFTGVVTKL	9	Unmodified	_VFTGVVTKL_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.29754638671875	2	482.29731	962.580068	-0.10271	-4.9536E-05	-0.18674	-9.0062E-05	-0.28944	-0.0001396	482.29713040030686	39.299	0.12586	39.299	39.245	39.371	0					6	4	2	0	0	0	0.13267	1	14955	14955		71.877	15.156	1	97109			46020	391	30416	30539	46610	46610					0.09728118971031563
VFTGVVTKL	9	Unmodified	_VFTGVVTKL_					0	0	0		CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2970275878906	2	482.29731	962.580068	0.69004	0.0003328	-1.2432	-0.0005996	-0.55317	-0.00026679	482.2966482731115	39.255	0.18008	39.255	39.19	39.37	0					14	6	3	0	0	0	0.24334	1	15428	15428		56.434	3.4971	1	215880			46021	391	30416	30539	46611	46611					0.09728118971031563
VFTPVVQRI	9	Unmodified	_VFTPVVQRI_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.8217163085938	2	529.821484	1057.62842	1.6357	0.00086663	-0.59916	-0.00031745	1.0365	0.00054919	529.8212112268241	38.38	0.44164	38.38	38.202	38.644	0					24	9	4	0	0	0	0.15163	1	15087	15087		67.494	16.158	1	495320			46022	5060	30417	30540	46612	46612					0.10190612610949756
VFTTQLNSI	9	Unmodified	_VFTTQLNSI_					0	0	0		nc|ENSG00000137872|Q8NFY4-7|SEMA6D;SEMA6D|p.K486Rfs*51|1|0.26|ENSG00000137872|chr15:47765894-47765894|A/-|frameshift_variant;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7798767089844	2	511.779482	1021.54441	0.0013661	6.9915E-07	0.5453	0.00027907	0.54667	0.00027977	511.7797077493598	37.474	0.49961	37.474	37.383	37.882	0					24	15	3	0	0	0	0.13267	1	14205	14205		71.877	3.0906	1	138110			46023	4206	30418	30541	46613	46613					0.034500367233818
VFVCVCFSR	9	Unmodified	_VFVCVCFSR_					0	0	0		ENST00000306749.3_1_17:80036222-80036480:-|nuORF	ENST00000306749.3_1_17:80036222-80036480:-|nuORF	ENST00000306749.3_1_17:80036222-80036480:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2616577148438	2	530.259348	1058.50414	3.4381	0.0018231	0.67201	0.00035634	4.1101	0.0021794	530.2596766637305	39.818	2.3657	39.818	38.903	41.269	0					143	51	4	0	0	0	0.35045	1	15954	15954		45.952	3.4775	1	1919900			46024	8521	30419	30542	46614	46614					-0.022769244724031523
VFVDRAACF	9	Unmodified	_VFVDRAACF_					0	0	0		SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2552490234375	2	514.25512	1026.49569	1.1421	0.00058736	-0.82323	-0.00042335	0.31892	0.000164	514.2546346853992	39.936	0.17259	39.936	39.85	40.022	0					9	6	2	0	0	0	0.27249	1	15233	15233		52.937	8.4056	1	45223			46025	1827	30420	30543	46615	46615					-0.016501551173860207
VFVEATHVL	9	Unmodified	_VFVEATHVL_					0	0	0		ENST00000482948.5_1_5:137536747-137548896:-|nuORF;CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant;ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23	ENST00000482948.5_1_5:137536747-137548896:-|nuORF	ENST00000482948.5_1_5:137536747-137548896:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.78466796875	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.334	1	39.334	38.834	39.834	0								0	0	0	0.32356	1	14972	14972		30.504	2.6214	1				46026	434	30421	30544	46616	46616					0.04834644448601466
VFVPVVALEQ	10	Unmodified	_VFVPVVALEQ_					0	0	0			REV__ENSG00000163083|ENST00000295228|INHBB	REV__ENSG00000163083|ENST00000295228|INHBB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.2331237792969	3	367.549859	1099.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.994	1	13.994	13.494	14.494	0								0	0	0	0.40002	1	3381	3381		28.081	0	1		+		46027	15858	30422	30545	46617	46617					0.08191773171211025
VFVVVRPSDS	10	Unmodified	_VFVVVRPSDS_					0	0	0		ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8080444335938	2	552.806031	1103.59751	0.85452	0.00047238	-1.715	-0.00094804	-0.86043	-0.00047565	552.807473552144	25.316	0.67249	25.316	25.012	25.684	0					31	13	4	0	0	0	0.41384	1	8770	8770		51.335	0	1	379000			46028	4848	30423	30546	46618	46618					0.04985414506040797
VFYDANDVGF	10	Unmodified	_VFYDANDVGF_					0	0	0		ENST00000494378.1_1_1:235643345-235647829:-|nuORF;nc|ENSG00000162885|Q8NCR0-2|B3GALNT2;B3GALNT2|p.G383Efs*5|1|0.06|ENSG00000162885|chr1:235455562-235455562|C/-|frameshift_variant;ENSG00000162885|ENST00000366600|B3GALNT2	ENST00000494378.1_1_1:235643345-235647829:-|nuORF	ENST00000494378.1_1_1:235643345-235647829:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.7576293945312	2	573.758746	1145.50294	-0.11836	-6.791E-05	-3.1568	-0.0018113	-3.2752	-0.0018792	573.7573998209328	35.853	0.20293	35.853	35.739	35.942	0					12	5	3	0	0	0	0.58189	1	13469	13469		36.447	2.2742	1	146180			46029	268	30424	30547	46619	46619					-0.0639914403595867
VGAAAAAL	8	Unmodified	_VGAAAAAL_					0	0	0		ENST00000380516.6_1_15:59225768-59225834:-|nuORF	ENST00000380516.6_1_15:59225768-59225834:-|nuORF	ENST00000380516.6_1_15:59225768-59225834:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.19384765625	2	322.192314	642.370075	3.5376	0.0011398	0.90356	0.00029112	4.4412	0.0014309	322.19254393235434	26.398	0.27493	26.398	26.306	26.581	0					15	9	2	0	0	0	0.78431	1	8001	8001		10.185	0	1	329890			46030	9095	30425	30548	46620	46620					0.03458501088709909
VGAAAALV	8	Unmodified	_VGAAAALV_					0	0	0			REV__ENST00000393196.7_1_17:49230915-49231008:+|nuORF	REV__ENST00000393196.7_1_17:49230915-49231008:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.2078857421875	2	336.207964	670.401375	0.37836	0.00012721	-0.46242	-0.00015547	-0.084059	-2.8261E-05	336.20777397717285	37.007	0.38152	37.007	36.902	37.284	0					23	11	3	0	0	0	0.70073	1	14429	14429		33.493	0	1	311560	+		46031	18846	30426	30549	46621	46621					0.05299074122797265
VGAALRPA	8	Unmodified	_VGAALRPA_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000129493|Q86XA9|HEATR5A	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.7319641113281	2	377.732138	753.449723	0.62172	0.00023484	-1.1463	-0.00043301	-0.52461	-0.00019816	377.7317102829672	13.696	0.10936	13.696	13.639	13.748	0					4	2	2	0	0	0	0.79176	1	3406	3406		21.702	6.0661	1	412010			46032	1023;3600	30427	30550	46622	46622					0.06313567762697403
VGAATHPL	8	Unmodified	_VGAATHPL_					0	0	0			REV__ENST00000204005.13_1_19:41129584-41129844:+|nuORF	REV__ENST00000204005.13_1_19:41129584-41129844:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.2164306640625	2	383.216321	764.418088	0.44993	0.00017242	-0.10262	-3.9326E-05	0.34731	0.00013309	383.2162854710373	29.234	0.23422	29.234	29.087	29.321	0					9	5	2	0	0	0	0.61433	1	10789	10789		46.766	4.292	1	295510	+		46033	17872	30428	30551	46623	46623					0.0264557500876208
VGADASVLR	9	Unmodified	_VGADASVLR_					0	0	0			REV__sp|P16731|UL88_HCMVAProteinUL88OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL88PE=1SV=1	REV__sp|P16731|UL88_HCMVAProteinUL88OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL88PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.2506103515625	2	444.250892	886.48723	-0.29288	-0.00013011	-0.16957	-7.5332E-05	-0.46245	-0.00020544	444.25071115901085	21.645	0.14542	21.645	21.568	21.713	0					7	4	2	0	0	0	0.50858	1	5997	5997		31.53	1.2121	1	83658	+		46034	21553	30429	30552	46624	46624					0.039446142376732496
VGADGGGTLP	10	Unmodified	_VGADGGGTLP_					0	0	0		ENST00000452079.5_2_1:3663703-3663874:-|nuORF	ENST00000452079.5_2_1:3663703-3663874:-|nuORF	ENST00000452079.5_2_1:3663703-3663874:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.2139587402344	2	422.213975	842.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.756	1	27.756	27.256	28.256	0								0	0	0	0.37816	1	8882	8882		37.159	0	1				46035	9657	30430	30553	46625	46625					-0.01411353924663672
VGAEKEKL	8	Unmodified	_VGAEKEKL_					0	0	0			REV__nc|ENSG00000112874|Q9BQG2-2|NUDT12	REV__nc|ENSG00000112874|Q9BQG2-2|NUDT12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2557678222656	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.317	1	35.317	34.817	35.817	0								0	0	0	1.7419	1	13234	13234		85.359	8.5853	1		+		46036	14017	30431	30554	46626	46626					0.05538382523195651
VGAERLLHLP	10	Unmodified	_VGAERLLHLP_					0	0	0			REV__ENST00000580011.1_1_17:62082465-62082525:-|nuORF	REV__ENST00000580011.1_1_17:62082465-62082525:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8889465332031	3	368.888986	1103.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.141	1	22.141	21.641	22.641	0								0	0	0	0.34115	1	7451	7451		44.377	3.599	1		+		46037	20447	30432	30555	46627	46627					0.09745113496910562
VGAGTISVP	9	Unmodified	_VGAGTISVP_					0	0	0		ENST00000357066.7_1_19:2071060-2071678:-|nuORF	ENST00000357066.7_1_19:2071060-2071678:-|nuORF	ENST00000357066.7_1_19:2071060-2071678:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.72930908203125	2	400.729261	799.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.099	1	26.099	25.599	26.599	0								0	0	0	0.24438	1	8354	8354		44.531	2.0566	1				46038	8815	30433	30556	46628	46628					0.036224244603772604
VGAGYYQSLL	10	Unmodified	_VGAGYYQSLL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000016285	REV__CON__ENSEMBL:ENSBTAP00000016285	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.7799682617188	2	535.779482	1069.54441	0.18405	9.861E-05	0.24487	0.00013119	0.42892	0.0002298	535.7797438608468	17.983	0.24553	17.983	17.883	18.128	0					7	5	2	0	0	0	0.56015	1	5188	5188		38.806	5.9937	1	515790	+	+	46039	12576	30434	30557	46629	46629					0.0124203672337444
VGAPKPQIPT	10	Unmodified	_VGAPKPQIPT_					0	0	0			REV__ENSG00000063169|ENST00000594866|BICRA	REV__ENSG00000063169|ENST00000594866|BICRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.829	1	53.829	53.329	54.329	0								0	0	0	0.4201	1	20661	20661		16.717	3.9057	1		+		46040	13095	30435	30558	46630	46630					0.0781033333993264
VGARIYHTI	9	Unmodified	_VGARIYHTI_					0	0	0		ENST00000539708.5_1_12:16513351-16516972:+|nuORF;MGST1|p.F135Lfs*15|2|0.15|ENSG00000008394|chr12:16363972-16363972|T/-|frameshift_variant;ENSG00000008394|ENST00000396210|MGST1	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2958984375	2	515.295633	1028.57671	0.15223	7.8443E-05	0.11223	5.7833E-05	0.26446	0.00013628	515.2956791976999	25.958	0.69933	25.958	25.718	26.417	0					21	12	2	0	0	0	0.17854	1	9097	9097		64.207	14.766	1	3063400			46041	1018	30436	30559	46631	46631					0.06356868917032443
VGASLEPRSL	10	Unmodified	_VGASLEPRSL_					0	0	0		nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.5292663574219	3	343.529346	1027.56621	0.35299	0.00012126	-0.49879	-0.00017135	-0.14581	-5.0089E-05	343.5291735753269	17.962	0.21913	17.962	17.802	18.022	0					10	4	3	0	0	0	0.73274	1	5417	5417		21.686	21.686	1	615560			46042	11678	30437	30560	46632	46632					0.05352841471949432
VGATTGVLP	9	Unmodified	_VGATTGVLP_					0	0	0			REV__ENST00000575919.1_1_17:4936254-4936696:-|nuORF	REV__ENST00000575919.1_1_17:4936254-4936696:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7369689941406	2	407.737086	813.459619	-0.57223	-0.00023332	1.262	0.00051455	0.68973	0.00028123	407.7371792143499	29.281	0.37207	29.281	29.073	29.445	0					24	9	4	0	0	0	0.25109	1	10427	10427		55.504	2.1528	1	426970	+		46043	14662	30438	30561	46633	46633					0.04542710977432307
VGATVPIHQKL	11	Unmodified	_VGATVPIHQKL_					0	0	0			REV__ENST00000287218.8_1_6:38120424-38120514:+|nuORF	REV__ENST00000287218.8_1_6:38120424-38120514:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	388.236328125	3	388.236274	1161.68699	-1.2026	-0.0004669	1.4437	0.00056051	0.24112	9.361E-05	388.57108831382084	23.995	0.42592	23.995	23.797	24.223	0					20	14	2	0	0	0	0.6208	1	7231	7231		35.178	2.1388	1	77353	+		46044	18145	30439	30562	46634	46634					0.11261669185410028
VGAVALLIGP	10	Unmodified	_VGAVALLIGP_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.292236328125	2	455.292028	908.569503	-1.1223	-0.00051096	0.65954	0.00030028	-0.46273	-0.00021068	455.2923555712344	30.906	0.81015	30.906	30.806	31.616	0					54	30	2	0	0	0	0.661	1	10348	10348		26.796	0	1	246750			46045	2771	30440	30563	46635	46635					0.11156136316628817
VGAVRSAS	8	Unmodified	_VGAVRSAS_					0	0	0			REV__ENST00000587681.5_1_19:10229095-10230535:-|nuORF	REV__ENST00000587681.5_1_19:10229095-10230535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.2288513183594	2	373.711402	745.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.728	1	16.728	16.228	17.228	0								0	0	0	1.7419	1	4026	4026		47.916	1.9636	1		+		46046	20497	30441	30564	46636	46636					0.025363870033743297
VGAVRSAS	8	Unmodified	_VGAVRSAS_					0	0	0			REV__ENST00000587681.5_1_19:10229095-10230535:-|nuORF	REV__ENST00000587681.5_1_19:10229095-10230535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.7113342285156	2	373.711402	745.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.753	1	16.753	16.253	17.253	0								0	0	0	1.7419	1	4036	4036		26.796	2.5934	1		+		46047	20497	30441	30564	46637	46637					0.025363870033743297
VGCFPLRLI	9	Unmodified	_VGCFPLRLI_					0	0	0			REV__ENSG00000277932|ENST00000610445|OR52E5	REV__ENSG00000277932|ENST00000610445|OR52E5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.8694152832031	3	339.868646	1016.58411	1.4791	0.0005027	0.7793	0.00026486	2.2584	0.00076756	339.8689355855372	14.638	0.25843	14.638	14.539	14.797	0					10	5	3	0	0	0	0.55282	1	3851	3851		26.693	2.4902	1	2372600	+		46048	17837	30442	30565	46638	46638					0.07647885193102866
VGCHHHDDGG	10	Unmodified	_VGCHHHDDGG_					0	0	0		KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.19873046875	2	517.198864	1032.38318	0.042912	2.2194E-05	-0.1038	-5.3687E-05	-0.060891	-3.1493E-05	517.1987909485597	12.268	0.11813	12.268	12.207	12.326	0					7	4	2	0	0	0	0.7005	1	2541	2541		21.96	1.4781	1	303650			46049	11244	30443	30566	46639	46639					-0.13172035861498443
VGCQPIAINAL	11	Unmodified	_VGCQPIAINAL_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8047485351562	2	549.802434	1097.59032	3.7643	0.0020696	0.44219	0.00024312	4.2064	0.0023127	549.8026374880227	24.846	0.2067	24.846	24.739	24.946	0					11	4	3	0	0	0	0.2859	1	8635	8635		64.207	5.4253	1	1566200	+		46050	17534	30444	30567	46640	46640					0.04542358633943877
VGCRAGPAL	9	Unmodified	_VGCRAGPAL_					0	0	0			REV__nc|ENSG00000160224|O43918-2|AIRE	REV__nc|ENSG00000160224|O43918-2|AIRE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	422.2287902832031	2	422.228905	842.443257	0.3865	0.00016319	-0.80216	-0.00033869	-0.41565	-0.0001755	422.2285180338074	24.37	0.24051	24.37	24.275	24.516	0					9	7	2	0	0	0	0.32741	1	7192	7192		47.916	0	1	69909	+		46051	15743	30445	30568	46641	46641					0.015733065396602797
VGCWKNLID	9	Unmodified	_VGCWKNLID_					0	0	0		ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant;ENSG00000112379|ENST00000251691|ARFGEF3;ARFGEF3|p.E1064Sfs*10|1|0.29|ENSG00000112379|chr6:138291869-138291869|C/-|frameshift_variant	ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant	ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.2705078125	2	524.268227	1046.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.721	1	11.721	11.221	12.221	0								0	0	0	0.35507	1	2471	2471		24.203	2.2429	1				46052	194	30446	30569	46642	46642					0.0005011405410186853
VGDFNGIAVY	10	Unmodified	_VGDFNGIAVY_					0	0	0			REV__tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1	REV__tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7638549804688	2	527.763832	1053.51311	1.262	0.00066603	-0.66301	-0.00034991	0.59898	0.00031612	527.7634148287651	32.777	0.19736	32.777	32.699	32.896	0					13	7	2	0	0	0	0.357	1	10606	10606		60.972	5.4677	1	161540	+		46053	21997	30447	30570	46643	46643					-0.011505363107062294
VGDGEVHAKF	10	Unmodified	_VGDGEVHAKF_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7658081054688	2	529.766906	1057.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.918	1	15.918	15.418	16.418	0								0	0	0	0.4201	1	4448	4448		20.947	0.4651	1		+		46054	13608	30448	30571	46644	46644					-0.00720018079186957
VGDPGQRTL	9	Unmodified	_VGDPGQRTL_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.75390625	2	471.753798	941.493044	-0.40017	-0.00018878	0.064911	3.0622E-05	-0.33526	-0.00015816	471.7538468696362	22.848	0.13475	22.848	22.745	22.879	0					6	4	2	0	0	0	0.47473	1	6527	6527		35.152	3.6222	1	91666			46055	220	30449	30572	46645	46645					0.019957127493285043
VGDPGQRTL	9	Unmodified	_VGDPGQRTL_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7534484863281	2	471.753798	941.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.192	1	23.192	22.692	23.692	0								0	0	0	0.11159	1	7643	7643		68.846	11.035	1				46056	220	30449	30572	46646	46646					0.019957127493285043
VGDPGQRTL	9	Unmodified	_VGDPGQRTL_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.75311279296875	2	471.753798	941.493044	-1.4074	-0.00066393	0.84778	0.00039994	-0.55959	-0.00026399	471.7541560969155	22.911	0.27682	22.911	22.794	23.071	0					18	9	3	0	0	0	0.28504	1	6790	6790		51.528	10.101	1	494770			46057	220	30449	30572	46647	46647					0.019957127493285043
VGDPGQRTL	9	Unmodified	_VGDPGQRTL_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.75384521484375	2	471.753798	941.493044	0.5892	0.00027796	-0.95643	-0.0004512	-0.36724	-0.00017325	471.7533157792121	23.103	0.26843	23.103	22.944	23.212	0					18	5	4	0	0	0	0.12278	1	7903	7903		74.165	26.205	1	2002600			46058	220	30449	30572	46648	46648					0.019957127493285043
VGDPGQRTL	9	Unmodified	_VGDPGQRTL_					0	0	0		nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.75341796875	2	471.753798	941.493044	-0.56824	-0.00026807	-0.46287	-0.00021836	-1.0311	-0.00048643	471.75363907588877	22.945	0.2221	22.945	22.825	23.047	0					7	5	2	0	0	0	0.15558	1	6919	6919		66.962	21.94	1	239040			46059	220	30449	30572	46649	46649					0.019957127493285043
VGDPRPSSK	9	Unmodified	_VGDPRPSSK_					0	0	0			REV__GBP6|p.N587Kfs*2|1|0.28|ENSG00000183347|chr1:89385321-89385322|-/A|frameshift_variant	REV__GBP6|p.N587Kfs*2|1|0.28|ENSG00000183347|chr1:89385321-89385322|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.7535095214844	2	471.753798	941.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.893	1	22.893	22.393	23.393	0								0	0	0	0.35737	1	6544	6544		23.523	1.5628	1		+		46060	16929	30450	30573	46650	46650					0.01995712749339873
VGDPSVHLL	9	Unmodified	_VGDPSVHLL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.7607116699219	2	468.761092	935.507631	0.026187	1.2275E-05	0.15176	7.114E-05	0.17795	8.3415E-05	468.7612695529182	38.096	0.25977	38.096	37.998	38.258	0					25	15	2	0	0	0	0.47038	1	12434	12434		35.618	3.6634	1	117720			46061	1934	30451	30574	46651	46651					0.03729784897484478
VGDPSVHLL	9	Unmodified	_VGDPSVHLL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7605285644531	2	468.761092	935.507631	-1.1317	-0.0005305	1.1335	0.00053136	0.0018395	8.6227E-07	468.76155777169976	38.184	0.30626	38.184	38.057	38.363	0					28	16	2	0	0	0	0.20551	1	12865	12865		60.972	9.6365	1	217660			46062	1934	30451	30574	46652	46652					0.03729784897484478
VGDPSVHLL	9	Unmodified	_VGDPSVHLL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7606201171875	2	468.761092	935.507631	-0.51786	-0.00024275	0.004092	1.9182E-06	-0.51376	-0.00024083	468.7610595273396	38.329	0.33986	38.329	38.17	38.51	0					16	7	3	0	0	0	0.20551	1	15045	15045		60.972	22.166	1	214380			46063	1934	30451	30574	46653	46653					0.03729784897484478
VGDPSVHLL	9	Unmodified	_VGDPSVHLL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7607116699219	2	468.761092	935.507631	0.56021	0.00026261	-0.84901	-0.00039798	-0.28879	-0.00013538	468.76050747015444	38.325	0.6228	38.325	38.072	38.695	0					38	13	4	0	0	0	0.062676	1	15039	15039		90.777	44.825	1	1569200			46064	1934	30451	30574	46654	46654					0.03729784897484478
VGDPSVHLL	9	Unmodified	_VGDPSVHLL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7607116699219	2	468.761092	935.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.369	1	38.369	37.869	38.869	0								0	0	0	0.1219	1	15080	15080		66.429	22.312	1				46065	1934	30451	30574	46655	46655					0.03729784897484478
VGDTGVVV	8	Unmodified	_VGDTGVVV_					0	0	0			REV__ENST00000360121.4_1_16:29677113-29677461:+|nuORF	REV__ENST00000360121.4_1_16:29677113-29677461:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.21002197265625	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.532	1	52.532	52.032	53.032	0								0	0	0	1.7419	1	19348	19348		20.482	0	1		+		46066	18554	30452	30575	46656	46656					0.01934449052009768
VGDTVIMVK	9	Unmodified	_VGDTVIMVK_					0	0	0			REV__tr|U7SZH3|U7SZH3_FUSNUAlcoholdehydrogenaseiron-type/glyceroldehydrogenaseGldAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00834PE=3SV=1	REV__tr|U7SZH3|U7SZH3_FUSNUAlcoholdehydrogenaseiron-type/glyceroldehydrogenaseGldAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00834PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2745361328125	2	481.272978	960.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.736	1	14.736	14.236	15.236	0								0	0	0	0.1633	1	3888	3888		56.721	5.5284	1		+		46067	22037	30453	30576	46657	46657					0.049558823396409935
VGEATTRVF	9	Unmodified	_VGEATTRVF_					0	0	0			REV__nc|ENSG00000120251|P42262-4|GRIA2	REV__nc|ENSG00000120251|P42262-4|GRIA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2633972167969	2	490.263999	978.513445	-0.53694	-0.00026324	0.53475	0.00026217	-0.0021938	-1.0755E-06	490.2641875224574	35.187	0.16363	35.187	35.081	35.245	0					6	3	2	0	0	0	0.16806	1	13552	13552		58.782	0	1	220490	+		46068	14272	30454	30577	46658	46658					0.02332883409144415
VGEKGIDIII	10	Unmodified	_VGEKGIDIII_					0	0	0		ENSG00000116791|ENST00000340866|CRYZ;nc|ENSG00000116791|Q08257-2|CRYZ	ENSG00000116791|ENST00000340866|CRYZ	ENSG00000116791|ENST00000340866|CRYZ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.817626953125	2	528.818607	1055.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.07	1	17.07	16.57	17.57	0								0	0	0	0.41137	1	4206	4206		27.047	7.0505	1				46069	3005	30455	30578	46659	46659					0.09707469308614236
VGEPKDVIR	9	Unmodified	_VGEPKDVIR_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.197509765625	3	338.197708	1011.57129	0.37153	0.00012565	-0.61971	-0.00020958	-0.24818	-8.3933E-05	338.19748126204286	19.189	0.16452	19.189	19.083	19.247	0					8	3	3	0	0	0	0.50461	1	6011	6011		31.53	0	1	403040			46070	6541	30456	30579	46660	46660					0.06597145334558263
VGEWNLIRGR	10	Unmodified	_VGEWNLIRGR_					0	0	0			REV__ENSG00000117148|ENST00000375406|ACTL8	REV__ENSG00000117148|ENST00000375406|ACTL8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.55841064453125	3	400.55964	1198.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.379	1	15.379	14.879	15.879	0								0	0	0	0.35368	1	4040	4040		54.722	13.642	1		+		46071	14181	30457	30580	46661	46661					0.06570730240082412
VGFIDYIVHL	10	Unmodified	_VGFIDYIVHL_					0	0	0		PDE4A|p.P652L|1|0.39|ENSG00000065989|chr19:10466915-10466915|C/T|missense_variant	PDE4A|p.P652L|1|0.39|ENSG00000065989|chr19:10466915-10466915|C/T|missense_variant	PDE4A|p.P652L|1|0.39|ENSG00000065989|chr19:10466915-10466915|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.55322265625	3	392.553492	1174.63865	0.45501	0.00017862	-1.229	-0.00048247	-0.77404	-0.00030385	392.5530122075252	18.988	0.21533	18.988	18.88	19.096	0					7	4	2	0	0	0	0.58189	1	5797	5797		36.447	3.4074	1	2115300			46072	11917	30458	30581	46662	46662					0.05831175545517908
VGFIQRSKST	10	Unmodified	_VGFIQRSKST_					0	0	0			REV__nc|ENSG00000168658|Q502W6-8|VWA3B	REV__nc|ENSG00000168658|Q502W6-8|VWA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.8165893554688	2	561.81693	1121.61931	0.47072	0.00026446	-1.1543	-0.00064851	-0.68359	-0.00038405	561.8162836469321	30.441	0.29931	30.441	30.311	30.61	0					16	7	3	0	0	0	0.68774	1	10982	10982		23.523	0.48021	1	815950	+		46073	16270	30459	30582	46663	46663					0.06336219254603748
VGFKPETFRK	10	Unmodified	_VGFKPETFRK_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.5654602050781	3	403.564391	1207.67134	3.1357	0.0012654	-0.62201	-0.00025102	2.5137	0.0010144	403.56423880434255	28.186	0.86646	28.186	28.075	28.941	0					36	17	3	0	0	0	0.63019	1	10192	10192		30.569	1.0181	1	2288800			46074	2973	30460	30583	46664	46664					0.07581382668354308
VGFLEIKAR	9	Unmodified	_VGFLEIKAR_					0	0	0		COL4A6|p.G611Afs*127|1|0.46|ENSG00000197565|chrX:108187220-108187220|T/-|frameshift_variant	COL4A6|p.G611Afs*127|1|0.46|ENSG00000197565|chrX:108187220-108187220|T/-|frameshift_variant	COL4A6|p.G611Afs*127|1|0.46|ENSG00000197565|chrX:108187220-108187220|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.8792724609375	3	344.878198	1031.61277	1.5209	0.00052453	1.2687	0.00043756	2.7897	0.00096209	344.8787164097818	24.813	0.25259	24.813	24.661	24.914	0					18	5	4	0	0	0	0.55379	1	8623	8623		26.693	0	1	1440000			46075	610	30461	30584	46665	46665					0.09822326093899392
VGFSYGDTKV	10	Unmodified	_VGFSYGDTKV_					0	0	0		nc|ENSG00000168658|Q502W6-4|VWA3B;ENST00000490947.2_1_2:98862011-98928799:+|nuORF;nc|ENSG00000168658|Q502W6-3|VWA3B;nc|ENSG00000168658|Q502W6-7|VWA3B;nc|ENSG00000168658|Q502W6-5|VWA3B;ENST00000495571.5_1_2:98833411-98928809:+|nuORF;ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B	nc|ENSG00000168658|Q502W6-4|VWA3B	nc|ENSG00000168658|Q502W6-4|VWA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.7692260742188	2	536.769114	1071.52368	-0.42134	-0.00022616	1.1733	0.0006298	0.75198	0.00040364	536.7697055201306	33.291	0.35284	33.291	33.162	33.515	0					35	14	4	0	0	0	0.58189	1	11134	11134		36.447	2.2742	1	452550			46076	6106	30462	30585	46666	46666					-0.00922553656278069
VGGFGGALLNK	11	Unmodified	_VGGFGGALLNK_					0	0	0			REV__ENSG00000178537|ENST00000319017|SLC25A20	REV__ENSG00000178537|ENST00000319017|SLC25A20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	344.86456298828125	3	344.86607	1031.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.848	1	11.848	11.348	12.348	0								0	0	0	0.42918	1	2378	2378		30.569	0.065224	1		+		46077	16735	30463	30586	46667	46667					0.06185449197187154
VGGHAVFL	8	Unmodified	_VGGHAVFL_					0	0	0		tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.2265319824219	2	400.226688	798.438824	-1.3215	-0.00052891	1.1236	0.00044969	-0.19793	-7.9216E-05	400.22709424386835	36.175	0.20953	36.175	36.075	36.285	0					13	9	2	0	0	0	0.63381	1	12242	12242		43.626	10.133	1	70654			46078	22646	30464	30587	46668	46668					0.0315416538842328
VGGILTKPAS	10	Unmodified	_VGGILTKPAS_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.78424072265625	2	471.784567	941.554582	0.5949	0.00028067	-0.3169	-0.00014951	0.278	0.00013116	471.7843836472868	43.258	0.38503	43.258	43.146	43.531	0					28	14	3	0	0	0	0.52707	1	17296	17296		42.396	3.59	1	281990			46079	6503	30465	30588	46669	46669					0.08146644448606821
VGGLHAVF	8	Unmodified	_VGGLHAVF_					0	0	0			REV__nc|ENSG00000141314|P58872-2|RHBDL3	REV__nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.2265625	2	400.226688	798.438824	-0.089533	-3.5833E-05	-0.066096	-2.6453E-05	-0.15563	-6.2287E-05	400.22672893658023	36.105	0.16619	36.105	36.035	36.201	0					10	7	2	0	0	0	0.63381	1	11838	11838		43.626	19.122	1	56641	+		46080	15109	30466	30589	46670	46670					0.0315416538842328
VGGLHAVF	8	Unmodified	_VGGLHAVF_					0	0	0			REV__nc|ENSG00000141314|P58872-2|RHBDL3	REV__nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.2266540527344	2	400.226688	798.438824	0.8088	0.0003237	-0.77829	-0.00031149	0.030511	1.2211E-05	400.226379041863	36.391	0.43044	36.391	36.284	36.714	0					21	12	3	0	0	0	0.63381	1	14162	14162		43.626	10.133	1	394970	+		46081	15109	30466	30589	46671	46671					0.0315416538842328
VGGLHAVF	8	Unmodified	_VGGLHAVF_					0	0	0			REV__nc|ENSG00000141314|P58872-2|RHBDL3	REV__nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.72821044921875	2	400.226688	798.438824	-0.13279	-5.3146E-05	0.37107	0.00014851	0.23828	9.5367E-05	400.226795513363	36.161	0.21453	36.161	36.067	36.282	0					11	7	2	0	0	0	0.70073	1	12927	12927		33.493	8.989	1	70633	+		46082	15109	30466	30589	46672	46672					0.0315416538842328
VGGLHAVF	8	Unmodified	_VGGLHAVF_					0	0	0			REV__nc|ENSG00000141314|P58872-2|RHBDL3	REV__nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.2264404296875	2	400.226688	798.438824	0.45211	0.00018095	-0.5114	-0.00020468	-0.059293	-2.3731E-05	400.22643523086265	36.368	0.31237	36.368	36.217	36.529	0					14	6	3	0	0	0	0.70073	1	14144	14144		33.493	8.989	1	386480	+		46083	15109	30466	30589	46673	46673					0.0315416538842328
VGGPRLSARPA	11	Unmodified	_VGGPRLSARPA_					0	0	0		ENST00000586128.5_1_17:75446713-75478229:+|nuORF	ENST00000586128.5_1_17:75446713-75478229:+|nuORF	ENST00000586128.5_1_17:75446713-75478229:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	360.8797912597656	3	360.880602	1079.61998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.157	1	22.157	21.657	22.657	0								0	0	0	0.41946	1	6222	6222		32.751	7.6245	1				46084	10900	30467	30590	46674	46674					0.08335058694342479
VGGRGAKL	8	Unmodified	_VGGRGAKL_					0	0	0			REV__ENST00000505031.6_1_12:133314934-133315033:-|nuORF	REV__ENST00000505031.6_1_12:133314934-133315033:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2394714355469	2	379.237587	756.460622	3.2438	0.0012302	1.6844	0.00063878	4.9282	0.001869	379.23817941665	32.745	0.36651	32.745	32.59	32.956	0					14	7	3	0	0	0	0.74117	1	12389	12389		28.254	0	1	415750	+		46085	19830	30468	30591	46675	46675					0.07264970136986904
VGGSTRIPK	9	Unmodified	_VGGSTRIPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000109971|ENST00000534624|HSPA8;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.77398681640625	2	457.774534	913.534515	-0.40243	-0.00018422	-0.44732	-0.00020477	-0.84974	-0.00038899	457.7742267924631	17.625	0.18282	17.625	17.548	17.731	0					10	5	3	0	0	0	0.38666	1	4243	4243		42.864	8.6917	1	200520			46086	2601;3488;7697;1211	30469	30592	46676	46676					0.07428893508665624
VGGSTRIPK	9	Unmodified	_VGGSTRIPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000109971|ENST00000534624|HSPA8;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.7744140625	2	457.774534	913.534515	-0.63413	-0.00029029	0.31049	0.00014213	-0.32364	-0.00014816	457.77467437746094	17.934	0.14749	17.934	17.844	17.992	0					8	3	3	0	0	0	0.085655	1	5162	5162		82.75	27.974	1	1723500			46087	2601;3488;7697;1211	30469	30592	46677	46677					0.07428893508665624
VGGSTRIPK	9	Unmodified	_VGGSTRIPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000109971|ENST00000534624|HSPA8;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.7743835449219	2	457.774534	913.534515	-1.1245	-0.00051475	0.66696	0.00030532	-0.45751	-0.00020943	457.77493080511516	17.653	0.14265	17.653	17.549	17.691	0					7	4	2	0	0	0	0.023928	1	4457	4457		115.49	46.707	1	385230			46088	2601;3488;7697;1211	30469	30592	46678	46678					0.07428893508665624
VGGSTRIPK	9	Unmodified	_VGGSTRIPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000109971|ENST00000534624|HSPA8;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7744140625	2	457.774534	913.534515	-0.65298	-0.00029892	0.20918	9.5758E-05	-0.4438	-0.00020316	457.7746457161063	17.879	0.21906	17.879	17.819	18.038	0					9	4	3	0	0	0	0.026538	1	5397	5397		112.41	45.982	1	1301900			46089	2601;3488;7697;1211	30469	30592	46679	46679					0.07428893508665624
VGGVAGLA	8	Unmodified	_VGGVAGLA_					0	0	0			REV__HOGA1|p.F283Lfs*31|1|0.08|ENSG00000241935|chr10:97611520-97611521|-/A|frameshift_variant	REV__HOGA1|p.F283Lfs*31|1|0.08|ENSG00000241935|chr10:97611520-97611521|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	322.19342041015625	2	322.192314	642.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.588	1	40.588	40.088	41.088	0								0	0	0	1.7419	1	15996	15996		24.504	0	1		+		46090	17691	30470	30593	46680	46680					0.03458501088709909
VGGVAGLA	8	Unmodified	_VGGVAGLA_					0	0	0			REV__HOGA1|p.F283Lfs*31|1|0.08|ENSG00000241935|chr10:97611520-97611521|-/A|frameshift_variant	REV__HOGA1|p.F283Lfs*31|1|0.08|ENSG00000241935|chr10:97611520-97611521|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.1934814453125	2	322.192314	642.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.542	1	44.542	44.042	45.042	0								0	0	0	1.7419	1	17844	17844		16.705	0	1		+		46091	17691	30470	30593	46681	46681					0.03458501088709909
VGGVGVGL	8	Unmodified	_VGGVGVGL_					0	0	0		ENST00000497139.5_1_6:43745967-43746111:+|nuORF	ENST00000497139.5_1_6:43745967-43746111:+|nuORF	ENST00000497139.5_1_6:43745967-43746111:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.201416015625	2	329.200139	656.385725	3.0025	0.00098842	1.2773	0.00042048	4.2798	0.0014089	329.2004309231311	28.486	0.61611	28.486	28.075	28.691	0					19	12	2	0	0	0	0.78431	1	10337	10337		10.185	0	1	396440			46092	10123	30471	30594	46682	46682					0.043787876057649555
VGHDDPEVKF	10	Unmodified	_VGHDDPEVKF_					0	0	0		CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462	CON__ENSEMBL:ENSBTAP00000024466	CON__ENSEMBL:ENSBTAP00000024466	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.51959228515625	3	381.520739	1141.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.834	1	23.834	23.334	24.334	0								0	0	0	0.3805	1	8265	8265		36.447	3.6962	1			+	46093	621	30472	30595	46683	46683					-0.024720527703493644
VGHYIAEY	8	Unmodified	_VGHYIAEY_					0	0	0			REV__nc|ENSG00000271271|P0DTE5-2|UGT2A2	REV__nc|ENSG00000271271|P0DTE5-2|UGT2A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2318420410156	2	476.232168	950.449782	0.0012687	6.0421E-07	0.24368	0.00011605	0.24495	0.00011665	476.2323394405534	34.307	0.42025	34.307	34.197	34.617	0					38	19	3	0	0	0	0.66238	1	11195	11195		39.021	1.993	1	267190	+		46094	14787	30473	30596	46684	46684					-0.02742477027948098
VGHYQIDMDR	10	Unmodified	_VGHYQIDMDR_					0	0	0			REV__ENSG00000188716|ENST00000338487|DUSP29	REV__ENSG00000188716|ENST00000338487|DUSP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.8620910644531	3	411.860878	1232.56081	-0.079371	-3.269E-05	2.8502	0.0011739	2.7708	0.0011412	411.8621200350816	22.296	0.099405	22.296	22.246	22.345	0					4	2	2	0	0	0	0.66699	1	6631	6631		26.063	1.5442	1	84835	+		46095	17185	30474	30597	46685	46685					-0.046172053821692316
VGIDIFTGK	9	Unmodified	_VGIDIFTGK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5AL1|p.K68T|1|0.33|ENSG00000253626|chr10:79512852-79512852|A/C|missense_variant;EIF5AL1|p.L114Sfs*3|1|0.07|ENSG00000253626|chr10:79512986-79512987|-/G|frameshift_variant;ENSG00000163577|ENST00000295822|EIF5A2	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2709045410156	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.86	1	43.86	43.36	44.36	0								0	0	0	0.26578	1	16504	16504		41.427	10.923	1				46096	3793	30475	30598	46686	46686					0.051709555572983845
VGIDIFTGK	9	Unmodified	_VGIDIFTGK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5AL1|p.K68T|1|0.33|ENSG00000253626|chr10:79512852-79512852|A/C|missense_variant;EIF5AL1|p.L114Sfs*3|1|0.07|ENSG00000253626|chr10:79512986-79512987|-/G|frameshift_variant;ENSG00000163577|ENST00000295822|EIF5A2	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2715148925781	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.873	1	43.873	43.373	44.373	0								0	0	0	0.12601	1	17127	17127		65.465	23.069	1				46097	3793	30475	30598	46687	46687					0.051709555572983845
VGIDIFTGK	9	Unmodified	_VGIDIFTGK_					0	0	0		ENSG00000253626|ENST00000520547|EIF5AL1;ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;EIF5AL1|p.K68T|1|0.33|ENSG00000253626|chr10:79512852-79512852|A/C|missense_variant;EIF5AL1|p.L114Sfs*3|1|0.07|ENSG00000253626|chr10:79512986-79512987|-/G|frameshift_variant;ENSG00000163577|ENST00000295822|EIF5A2	ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000253626|ENST00000520547|EIF5AL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2710266113281	2	475.271293	948.528032	-0.60866	-0.00028928	1.2508	0.00059449	0.64219	0.00030522	475.27177472310836	43.785	0.15181	43.785	43.71	43.862	0					8	4	2	0	0	0	0.24334	1	17526	17526		56.434	20.816	1	82739			46098	3793	30475	30598	46688	46688					0.051709555572983845
VGIGVHAELI	10	Unmodified	_VGIGVHAELI_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53472900390625	3	336.53432	1006.58113	0.24126	8.1193E-05	-0.29703	-9.996E-05	-0.055767	-1.8768E-05	336.5342616258715	31.588	0.59873	31.588	31.248	31.847	0					37	26	2	0	0	0	0.67199	1	10092	10092		17.468	0	1	87893	+		46099	13149	30476	30599	46689	46689					0.0781033333993264
VGISTHLPL	9	Unmodified	_VGISTHLPL_					0	0	0			REV__nc|ENSG00000159322|Q9BRR6-5|ADPGK	REV__nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7792053222656	2	468.779285	935.544017	-1.1351	-0.0005321	0.60079	0.00028164	-0.53427	-0.00025046	468.7795603270374	27.659	0.69628	27.659	27.296	27.992	0					38	24	2	0	0	0	0.35045	1	8814	8814		45.952	10.334	1	86483	+		46100	21086	30477	30600	46690	46690					0.07366661794185347
VGKGRLWFL	9	Unmodified	_VGKGRLWFL_					0	0	0		ENST00000321407.2_1_7:127221824-127222049:-|nuORF	ENST00000321407.2_1_7:127221824-127222049:-|nuORF	ENST00000321407.2_1_7:127221824-127222049:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.220947265625	3	359.218555	1074.63383	3.092	0.0011107	3.7128	0.0013337	6.8049	0.0024444	359.2197306426752	11.133	0.041463	11.133	11.095	11.136	0					4	2	2	0	0	0	0.54267	1	2129	2129		27.882	6.9353	1	40188			46101	8615	30478	30601	46691	46691					0.09950336193401199
VGKPTTIYM	9	Unmodified	_VGKPTTIYM_					0	0	0		ENST00000529111.5_1_11:83344252-84634162:-|nuORF;DLG2|p.V595Sfs*16|1|0.37|ENSG00000150672|chr11:83541701-83541701|C/-|frameshift_variant;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000150672|Q15700|DLG2;nc|ENSG00000150672|Q15700-4|DLG2;ENSG00000150672|ENST00000376104|DLG2	ENST00000529111.5_1_11:83344252-84634162:-|nuORF	ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.1857604980469	3	337.184411	1008.5314	3.0157	0.0010168	0.95644	0.0003225	3.9721	0.0013393	337.1846925948471	18.1	0.11507	18.1	18.044	18.159	0					6	2	3	0	0	0	0.32741	1	5365	5365		37.812	0	1	1598400			46102	798	30479	30602	46692	46692					0.027478823396336338
VGKRLTNLQ	9	Unmodified	_VGKRLTNLQ_					0	0	0		FLNC|p.D59N|1|0.25|ENSG00000128591|chr7:128830812-128830812|G/A|missense_variant	FLNC|p.D59N|1|0.25|ENSG00000128591|chr7:128830812-128830812|G/A|missense_variant	FLNC|p.D59N|1|0.25|ENSG00000128591|chr7:128830812-128830812|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.545166015625	3	343.545219	1027.61383	0.20453	7.0264E-05	-0.37504	-0.00012884	-0.17052	-5.8581E-05	343.54514594888906	13.013	0.15307	13.013	12.933	13.086	0					17	6	4	0	0	0	0.099922	1	2518	2518		65.465	0	1	1521100			46103	11140	30480	30603	46693	46693					0.1011254046279646
VGKVGPARAGT	11	Unmodified	_VGKVGPARAGT_					0	0	0		ENST00000591735.2_1_19:1491211-1495711:+|nuORF	ENST00000591735.2_1_19:1491211-1495711:+|nuORF	ENST00000591735.2_1_19:1491211-1495711:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.79840087890625	2	506.79854	1011.58253	0.81144	0.00041124	-0.13725	-6.9556E-05	0.6742	0.00034168	506.79842197671206	22.745	0.2305	22.745	22.561	22.791	0					11	7	2	0	0	0	0.67178	1	6464	6464		30.318	3.6248	1	64228			46104	10968	30481	30604	46694	46694					0.07719967428693053
VGKVVNPTQA	10	Unmodified	_VGKVVNPTQA_					0	0	0		CON__P34955	CON__P34955	CON__P34955	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.1978454589844	3	338.197708	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.995	1	18.995	18.495	19.495	0								0	0	0	0.4201	1	5066	5066		16.007	0	1			+	46105	643	30482	30605	46695	46695					0.06597145334558263
VGLCVLLA	8	Unmodified	_VGLCVLLA_					0	0	0			REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.24127197265625	2	394.24095	786.467346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.127	1	28.127	27.627	28.627	0								0	0	0	1.7419	1	10270	10270		33.493	0	1		+		46106	16516	30483	30606	46696	46696					0.06557146973352701
VGLFQQSQK	9	Unmodified	_VGLFQQSQK_					0	0	0			REV__WDR17|p.T85Qfs*23|1|0.4|ENSG00000150627|chr4:176115847-176115847|A/-|frameshift_variant	REV__WDR17|p.T85Qfs*23|1|0.4|ENSG00000150627|chr4:176115847-176115847|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7869262695312	2	517.785099	1033.55564	3.3334	0.001726	0.25467	0.00013187	3.5881	0.0018579	517.7852854190077	17.809	0.21486	17.809	17.7	17.915	0					8	4	3	0	0	0	0.21419	1	5220	5220		62.107	5.3864	1	589740	+		46107	22291	30484	30607	46697	46697					0.04020858817534645
VGLGAYRC	8	Unmodified	_VGLGAYRC_					0	0	0		ENST00000568546.5_3_16:2029772-2030570:+|nuORF	ENST00000568546.5_3_16:2029772-2030570:+|nuORF	ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	419.7160949707031	2	419.71563	837.416708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.071	1	39.071	38.571	39.571	0								0	0	0	1.7419	1	12711	12711		14.664	2.4572	1				46108	10775	30485	30608	46698	46698					-0.008503823516548437
VGLGLGVG	8	Unmodified	_VGLGLGVG_					0	0	0		ENST00000594085.5_1_19:40854631-40871460:+|nuORF;ENST00000409419.5_1_19:40854631-40872336:+|nuORF;ENST00000409587.5_1_19:40854631-40871796:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.2078552246094	2	336.207964	670.401375	0.6587	0.00022146	-0.83783	-0.00028169	-0.17913	-6.0225E-05	336.2076467644043	37.036	0.28853	37.036	36.902	37.191	0					15	8	2	0	0	0	0.55232	1	13994	13994		54.895	0	1	398100			46109	9298	30486	30609	46699	46699					0.05299074122820002
VGLGLGVG	8	Unmodified	_VGLGLGVG_					0	0	0		ENST00000594085.5_1_19:40854631-40871460:+|nuORF;ENST00000409419.5_1_19:40854631-40872336:+|nuORF;ENST00000409587.5_1_19:40854631-40871796:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.2080993652344	2	336.207964	670.401375	0.54386	0.00018285	-0.2876	-9.6692E-05	0.25626	8.6157E-05	336.2078308642462	36.778	0.20341	36.778	36.711	36.914	0					15	9	2	0	0	0	0.70073	1	13160	13160		33.493	0	1	123880			46110	9298	30486	30609	46700	46700					0.05299074122820002
VGLGLGVG	8	Unmodified	_VGLGLGVG_					0	0	0		ENST00000594085.5_1_19:40854631-40871460:+|nuORF;ENST00000409419.5_1_19:40854631-40872336:+|nuORF;ENST00000409587.5_1_19:40854631-40871796:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.2080078125	2	336.207964	670.401375	-0.014504	-4.8763E-06	-0.024544	-8.252E-06	-0.039048	-1.3128E-05	336.20794312640265	36.94	0.40651	36.94	36.829	37.235	0					16	8	3	0	0	0	0.31527	1	14385	14385		80.997	13.67	1	1029800			46111	9298	30486	30609	46701	46701					0.05299074122820002
VGLGLGVG	8	Unmodified	_VGLGLGVG_					0	0	0		ENST00000594085.5_1_19:40854631-40871460:+|nuORF;ENST00000409419.5_1_19:40854631-40872336:+|nuORF;ENST00000409587.5_1_19:40854631-40871796:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	ENST00000594085.5_1_19:40854631-40871460:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.2079772949219	2	336.207964	670.401375	1.6068	0.00054023	-1.4939	-0.00050227	0.11289	3.7956E-05	336.20745016813476	36.969	0.25674	36.969	36.863	37.12	0					8	5	2	0	0	0	0.63381	1	14425	14425		43.626	10.133	1	122550			46112	9298	30486	30609	46702	46702					0.05299074122820002
VGLGLVGG	8	Unmodified	_VGLGLVGG_					0	0	0		ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.2079772949219	2	336.207964	670.401375	0.37203	0.00012508	0.0086748	2.9166E-06	0.3807	0.00012799	336.2078483909296	36.711	0.2023	36.711	36.655	36.857	0					14	11	2	0	0	0	0.63381	1	12042	12042		43.626	0	1	72010			46113	193	30487	30610	46703	46703					0.05299074122820002
VGLGRPRR	8	Unmodified	_VGLGRPRR_					0	0	0			REV__ENST00000487556.5_1_1:43282804-43291395:+|nuORF	REV__ENST00000487556.5_1_1:43282804-43291395:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7894287109375	2	455.78831	909.562067	2.4953	0.0011373	0.089683	4.0876E-05	2.585	0.0011782	455.788325176875	35.253	0.42033	35.253	35.097	35.518	0					20	8	3	0	0	0	0.57802	1	13606	13606		52.299	2.2746	1	787760	+		46114	19680	30488	30611	46704	46704					0.10366841559550721
VGLIFLTEH	9	Unmodified	_VGLIFLTEH_					0	0	0			REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7904663085938	2	514.792392	1027.57023	0.026528	1.3657E-05	-2.6256	-0.0013516	-2.5991	-0.001338	514.7904749845702	17.98	0.23814	17.98	17.844	18.082	0					16	5	5	0	0	0	0.25716	1	5209	5209		38.806	0	1	2183700	+		46115	17756	30489	30612	46705	46705					0.057549309656678815
VGLILSFCAK	10	Unmodified	_VGLILSFCAK_					0	0	0			REV__ENSG00000197849|ENST00000641972|OR8G1	REV__ENSG00000197849|ENST00000641972|OR8G1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.8060913085938	2	525.804445	1049.59434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.105	1	13.105	12.605	13.605	0								0	0	0	0.4201	1	2666	2666		15.642	2.6826	1		+		46116	17358	30490	30613	46706	46706					0.07152448127658317
VGLLSGTLC	9	Carbamidomethyl (C)	_VGLLSGTLC(Carbamidomethyl (C))_	VGLLSGTLC(1)		VGLLSGTLC(42)		0	1	0			REV__ENST00000427841.5_1_3:195694776-195701406:-|nuORF	REV__ENST00000427841.5_1_3:195694776-195701406:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2554626464844	2	460.249503	918.484453	0.7225	0.00033253	-0.99788	-0.00045927	-0.27538	-0.00012674	460.2490956743253	38.534	0.83631	38.534	38.248	39.084	0					76	29	5	0	0	0	0.39123	1	15058	15058		42.474	14.22	1	8593500	+		46117	19127	30491	30614	46707	46707	685				0.021950227884985907
VGLNVFLEK	9	Unmodified	_VGLNVFLEK_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.3013916015625	2	509.800217	1017.58588	1.1797	0.00060139	-0.80991	-0.00041289	0.36975	0.0001885	509.79968521979873	44.741	0.17366	44.741	44.661	44.835	0					14	10	2	0	0	0	0.27891	1	17383	17383		53.089	6.3225	1	71024			46118	5032	30492	30615	46708	46708					0.07779217482709555
VGLNVFLEK	9	Unmodified	_VGLNVFLEK_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.80120849609375	2	509.800217	1017.58588	1.3553	0.00069095	-0.058252	-2.9697E-05	1.2971	0.00066125	509.799931586554	44.709	0.23051	44.709	44.614	44.844	0					15	10	2	0	0	0	0.031595	1	17909	17909		112.11	46.21	1	122970			46119	5032	30492	30615	46709	46709					0.07779217482709555
VGLNVFLEK	9	Unmodified	_VGLNVFLEK_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.301513671875	2	509.800217	1017.58588	3.0267	0.001543	-3.662	-0.0018669	-0.63527	-0.00032386	509.7985142199625	44.704	0.18882	44.704	44.626	44.815	0					14	8	2	0	0	0	0.39283	1	17899	17899		42.864	11.334	1	128360			46120	5032	30492	30615	46710	46710					0.07779217482709555
VGLPPVPPSS	10	Unmodified	_VGLPPVPPSS_					0	0	0		MLIP|p.E348Rfs*6|1|0.27|ENSG00000146147|chr6:54202155-54202156|-/A|frameshift_variant;nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP	MLIP|p.E348Rfs*6|1|0.27|ENSG00000146147|chr6:54202155-54202156|-/A|frameshift_variant	MLIP|p.E348Rfs*6|1|0.27|ENSG00000146147|chr6:54202155-54202156|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.271484375	2	475.271293	948.528032	0.73443	0.00034906	-1.1956	-0.00056825	-0.46121	-0.0002192	475.2707605336704	43.768	0.23464	43.768	43.699	43.934	0					11	7	2	0	0	0	0.63073	1	17537	17537		30.504	0	1	73249			46121	4713	30493	30616	46711	46711					0.05170955557287016
VGLPRVEV	8	Unmodified	_VGLPRVEV_					0	0	0		SYNPO2|p.A279V|2|0.19|ENSG00000172403|chr4:119027205-119027205|C/T|missense_variant	SYNPO2|p.A279V|2|0.19|ENSG00000172403|chr4:119027205-119027205|C/T|missense_variant	SYNPO2|p.A279V|2|0.19|ENSG00000172403|chr4:119027205-119027205|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.765869140625	2	434.766178	867.517802	0.85483	0.00037165	-1.1654	-0.00050667	-0.31054	-0.00013501	434.7657062975698	37.925	0.1804	37.925	37.81	37.99	0					9	6	2	0	0	0	0.68754	1	14844	14844		35.201	1.6851	1	79841			46122	22509	30494	30617	46712	46712					0.07874392622716186
VGLSFQEVQ	9	Unmodified	_VGLSFQEVQ_					0	0	0		ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1783447265625	3	336.178313	1005.51311	-0.67238	-0.00022604	0.71758	0.00024123	0.045201	1.5196E-05	336.178550190043	17.961	0.23166	17.961	17.869	18.101	0					12	6	4	0	0	0	0.54267	1	4614	4614		51.193	8.3284	1	1091500			46123	7466	30495	30618	46713	46713					0.010574636892897615
VGLSLKEQ	8	Unmodified	_VGLSLKEQ_					0	0	0		ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF;nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;ENST00000528293.1_1_19:17953834-17954275:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.25555419921875	2	437.255643	872.496732	0.6258	0.00027363	-0.55979	-0.00024477	0.066014	2.8865E-05	437.25536423429116	26.767	0.46938	26.767	26.628	27.097	0					18	11	2	0	0	0	0.3961	1	9266	9266		71.296	1.6681	1	328970			46124	2376	30496	30619	46714	46714					0.05538382523184282
VGLVGREL	8	Unmodified	_VGLVGREL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7580261230469	2	421.758352	841.502152	-0.89799	-0.00037874	-0.30392	-0.00012818	-1.2019	-0.00050692	421.75824798100655	34.217	0.2398	34.217	34.132	34.372	0					14	6	3	0	0	0	0.3049	1	12731	12731		82.241	18.934	1	667120			46125	8044	30497	30620	46715	46715					0.07506106105654453
VGLVPLLSD	9	Unmodified	_VGLVPLLSD_					0	0	0			REV__ENSG00000103047|ENST00000261778|TANGO6	REV__ENSG00000103047|ENST00000261778|TANGO6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.7724304199219	2	456.773668	911.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.465	1	51.465	50.965	51.965	0								0	0	0	0.34907	1	16718	16718		25.45	6.0902	1		+		46126	13660	30498	30621	46716	46716					0.07347839700048553
VGLVTMFK	8	Unmodified	_VGLVTMFK_					0	0	0		sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1;sp|F5H9I4|US13_HCMVMMembraneproteinUS13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US13PE=3SV=1	sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.7610778808594	2	447.759507	893.50446	3.4882	0.0015619	-0.077975	-3.4914E-05	3.4102	0.001527	447.7594905108505	18.877	0.15199	18.877	18.802	18.954	0					9	4	3	0	0	0	0.61938	1	5003	5003		45.952	5.3793	1	418330			46127	22434	30499	30622	46717	46717					0.05344818519108685
VGLYAANQ	8	Unmodified	_VGLYAANQ_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	418.2187194824219	2	418.21906	834.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.575	1	14.575	14.075	15.075	0								0	0	0	1.7419	1	3022	3022		14.664	0.88877	1				46128	5881	30500	30623	46718	46718					-0.0002674619944400547
VGMDDFLGIY	10	Unmodified	_VGMDDFLGIY_					0	0	0		TLE6|p.V527I|1|0.06|ENSG00000104953|chr19:2994060-2994060|G/A|missense_variant	TLE6|p.V527I|1|0.06|ENSG00000104953|chr19:2994060-2994060|G/A|missense_variant	TLE6|p.V527I|1|0.06|ENSG00000104953|chr19:2994060-2994060|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.267822265625	2	565.26535	1128.51615	3.4701	0.0019615	0.1297	7.3312E-05	3.5998	0.0020348	565.2655073905105	49.153	0.20386	49.153	49.072	49.276	0					15	12	2	0	0	0	0.61887	1	19472	19472		31.955	1.4512	1	62286			46129	22536	30501	30624	46719	46719					-0.04297029248209583
VGMPDAKAIA	10	Unmodified	_VGMPDAKAIA_					0	0	0		CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7643127441406	2	486.762778	971.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.242	1	18.242	17.742	18.742	0								0	0	0	0.17308	1	5565	5565		37.159	0	1				46130	506	30502	30625	46720	46720					0.02410711679817723
VGPGGPTVIP	10	Unmodified	_VGPGGPTVIP_					0	0	0		ENST00000537604.5_1_11:62469959-62472952:-|nuORF	ENST00000537604.5_1_11:62469959-62472952:-|nuORF	ENST00000537604.5_1_11:62469959-62472952:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	447.2580261230469	2	447.258185	892.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.86	1	35.86	35.36	36.36	0								0	0	0	0.4201	1	12802	12802		16.473	0	1				46131	10506	30503	30626	46721	46721					0.05126686385801804
VGPGPVRTL	9	Unmodified	_VGPGPVRTL_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.27142333984375	2	448.271627	894.528701	-0.44554	-0.00019972	0.018324	8.2142E-06	-0.42722	-0.00019151	448.2715878680094	29.043	0.21195	29.043	28.957	29.169	0					13	5	3	0	0	0	0.30841	1	10335	10335		49.536	15.364	1	620410			46132	1533	30504	30627	46722	46722					0.07721794997007692
VGPGPVRTL	9	Unmodified	_VGPGPVRTL_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	448.2711181640625	2	448.271627	894.528701	-1.1768	-0.00052751	0.67332	0.00030183	-0.50345	-0.00022568	448.2718293628718	28.8	0.25197	28.8	28.714	28.966	0					19	9	3	0	0	0	0.055856	1	9314	9314		93.195	21.9	1	546700			46133	1533	30504	30627	46723	46723					0.07721794997007692
VGPGPVRTL	9	Unmodified	_VGPGPVRTL_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2713317871094	2	448.271627	894.528701	0.85855	0.00038486	-1.2999	-0.0005827	-0.44134	-0.00019784	448.271032403672	29	0.31367	29	28.893	29.207	0					11	6	2	0	0	0	0.13267	1	10585	10585		71.877	18.526	1	1457700			46134	1533	30504	30627	46724	46724					0.07721794997007692
VGPGRVSET	9	Unmodified	_VGPGRVSET_					0	0	0			REV__ENST00000529299.2_1_1:110170417-110171118:+|nuORF	REV__ENST00000529299.2_1_1:110170417-110171118:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2403564453125	2	451.240524	900.466495	-1.1897	-0.00053682	1.3696	0.000618	0.17991	8.1185E-05	451.24094975289404	22.973	0.21984	22.973	22.878	23.098	0					12	7	2	0	0	0	0.51817	1	6845	6845		30.504	2.2494	1	62248	+		46135	20030	30505	30628	46725	46725					0.012280238579933211
VGPKFSIPSP	10	Unmodified	_VGPKFSIPSP_					0	0	0		nc|ENSG00000141052|Q8IZQ8-2|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.5292663574219	3	343.530687	1027.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.73	1	17.73	17.23	18.23	0								0	0	0	0.4201	1	4501	4501		17.468	2.1349	1				46136	4425	30506	30629	46726	46726					0.057549309656678815
VGPLRGGA	8	Unmodified	_VGPLRGGA_					0	0	0			REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF	REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.71636962890625	2	363.716488	725.418422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.73	1	14.73	14.23	15.23	0								0	0	0	1.7419	1	3177	3177		23.037	1.3344	1		+		46137	18744	30507	30630	46727	46727					0.044729947286214156
VGPLSSTH	8	Unmodified	_VGPLSSTH_					0	0	0			REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|16|3|sense	REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|16|3|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.2104797363281	2	399.211235	796.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.14	1	23.14	22.64	23.64	0								0	0	0	1.7419	1	6651	6651		37.028	7.1869	1		+		46138	20880	30508	30631	46728	46728					0.0015696728352168066
VGPPGRSSL	9	Unmodified	_VGPPGRSSL_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.245361328125	2	435.245609	868.476666	-0.27266	-0.00011868	-0.16206	-7.0537E-05	-0.43473	-0.00018921	435.2455719228957	24.856	0.6246	24.856	24.462	25.087	0					47	18	4	0	0	0	0.36135	1	7416	7416		45.022	9.8702	1	1358800			46139	2198	30509	30632	46729	46729					0.03716631583245089
VGPPGRSSL	9	Unmodified	_VGPPGRSSL_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2453308105469	2	435.245609	868.476666	-0.42718	-0.00018593	-0.062059	-2.7011E-05	-0.48924	-0.00021294	435.2456152023038	25.137	0.9382	25.137	24.726	25.664	0					56	22	5	0	0	0	0.35021	1	8431	8431		45.972	6.7194	1	6273100			46140	2198	30509	30632	46730	46730					0.03716631583245089
VGPPKGPVPR	10	Unmodified	_VGPPKGPVPR_					0	0	0			REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.2054443359375	3	335.206426	1002.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.609	1	21.609	21.109	22.109	0								0	0	0	0.4201	1	5977	5977		17.468	1.8262	1		+		46141	13838	30510	30633	46731	46731					0.09625459296705685
VGPPRAAP	8	Unmodified	_VGPPRAAP_					0	0	0			REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	REV__FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	382.7244567871094	2	382.724313	763.434072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.542	1	16.542	16.042	17.042	0								0	0	0	1.7419	1	3992	3992		23.037	0	1		+		46142	20679	30511	30634	46732	46732					0.04289281245644361
VGPPRSGSL	9	Unmodified	_VGPPRSGSL_					0	0	0			REV__ENSG00000119574|ENST00000594051|ZBTB45	REV__ENSG00000119574|ENST00000594051|ZBTB45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.2454528808594	2	435.245609	868.476666	-0.27266	-0.00011868	-0.16206	-7.0537E-05	-0.43473	-0.00018921	435.2455719228957	24.856	0.6246	24.856	24.462	25.087	0					47	18	4	0	0	0	0.41113	1	7265	7265		40.778	0	1	1358800	+		46143	14247	30512	30635	46733	46733					0.03716631583245089
VGPPRSGSL	9	Unmodified	_VGPPRSGSL_					0	0	0			REV__ENSG00000119574|ENST00000594051|ZBTB45	REV__ENSG00000119574|ENST00000594051|ZBTB45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.24542236328125	2	435.245609	868.476666	-0.61031	-0.00026563	0.36668	0.0001596	-0.24363	-0.00010604	435.245743485861	24.951	0.59183	24.951	24.506	25.098	0					32	13	3	0	0	0	0.44593	1	7749	7749		37.812	0	1	692750	+		46144	14247	30512	30635	46734	46734					0.03716631583245089
VGPYTGLSKN	10	Unmodified	_VGPYTGLSKN_					0	0	0			REV__ENST00000530018.5_1_11:77888841-77889027:-|nuORF	REV__ENST00000530018.5_1_11:77888841-77889027:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.27734375	2	518.277106	1034.53966	0.051718	2.6804E-05	0.090781	4.705E-05	0.1425	7.3854E-05	518.2771684568324	31.289	0.17485	31.289	31.197	31.372	0					8	4	2	0	0	0	0.58896	1	11378	11378		35.618	1.4457	1	362800	+		46145	20038	30513	30636	46735	46735					0.023771525806068894
VGQPRVSP	8	Unmodified	_VGQPRVSP_					0	0	0		ENST00000493924.5_1_11:2337619-2338684:+|nuORF;ENST00000461200.5_1_11:2337241-2339151:+|nuORF	ENST00000493924.5_1_11:2337619-2338684:+|nuORF	ENST00000493924.5_1_11:2337619-2338684:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	420.240234375	2	420.240327	838.466101	-1.2831	-0.00053922	0.77382	0.00032519	-0.5093	-0.00021403	420.2406277660308	21.006	0.30682	21.006	20.891	21.198	0					20	9	3	0	0	0	0.64096	1	5951	5951		42.474	6.8562	1	1494700			46146	9728	30514	30637	46736	46736					0.040406489287988734
VGQPRVSP	8	Unmodified	_VGQPRVSP_					0	0	0		ENST00000493924.5_1_11:2337619-2338684:+|nuORF;ENST00000461200.5_1_11:2337241-2339151:+|nuORF	ENST00000493924.5_1_11:2337619-2338684:+|nuORF	ENST00000493924.5_1_11:2337619-2338684:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.2401123046875	2	420.240327	838.466101	0.87944	0.00036958	-1.4343	-0.00060275	-0.55487	-0.00023318	420.2396919843786	21.216	0.41348	21.216	21.112	21.526	0					21	8	3	0	0	0	0.59411	1	7014	7014		50.025	2.1089	1	7826900			46147	9728	30514	30637	46737	46737					0.040406489287988734
VGRADGKP	8	Unmodified	_VGRADGKP_					0	0	0		ENST00000319481.7_1_18:21977621-21977729:-|nuORF	ENST00000319481.7_1_18:21977621-21977729:-|nuORF	ENST00000319481.7_1_18:21977621-21977729:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.226806640625	2	400.224677	798.434801	3.1515	0.0012613	1.7199	0.00068834	4.8714	0.0019497	400.2254833720599	36.354	0.31302	36.354	36.249	36.562	0					12	6	2	0	0	0	0.61938	1	14135	14135		45.952	3.5558	1	388870			46148	8608	30515	30638	46738	46738					0.027520758947048307
VGRITPLS	8	Unmodified	_VGRITPLS_					0	0	0		MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant;nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3	MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant	MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.7581481933594	2	421.758352	841.502152	-0.89856	-0.00037897	0.62837	0.00026502	-0.27018	-0.00011395	421.75859650057413	28.117	0.29714	28.117	27.953	28.25	0					15	7	3	0	0	0	0.54629	1	9888	9888		55.504	4.1688	1	464210			46149	3759	30516	30639	46739	46739					0.07506106105654453
VGRLILYSS	9	Unmodified	_VGRLILYSS_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53411865234375	3	336.53432	1006.58113	0.24153	8.1285E-05	-0.51451	-0.00017315	-0.27298	-9.1866E-05	336.5341389799546	26.564	0.59578	26.564	26.154	26.75	0					35	19	2	0	0	0	0.51817	1	7958	7958		30.318	0	1	128490			46150	4608	30517	30640	46740	46740					0.07810333339944009
VGRLILYSS	9	Unmodified	_VGRLILYSS_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342102050781	3	336.53432	1006.58113	0.24136	8.1227E-05	-0.55762	-0.00018766	-0.31626	-0.00010643	336.5341107950799	33.422	0.9894	33.422	33.084	34.073	0					74	39	2	0	0	0	0.61124	1	10771	10771		13.454	0	1	153680			46151	4608	30517	30640	46741	46741					0.07810333339944009
VGRLILYSS	9	Unmodified	_VGRLILYSS_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5341491699219	3	336.53432	1006.58113	0.24142	8.1245E-05	-0.38012	-0.00012792	-0.1387	-4.6678E-05	336.5342118907561	42.467	0.40836	42.467	42.315	42.723	0					39	25	2	0	0	0	0.61124	1	13476	13476		13.454	1.8181	1	52465			46152	4608	30517	30640	46742	46742					0.07810333339944009
VGRLILYSS	9	Unmodified	_VGRLILYSS_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5343322753906	3	336.53432	1006.58113	-0.67403	-0.00022683	0.68053	0.00022902	0.0064986	2.187E-06	336.53450439712606	23.055	0.8523	23.055	22.722	23.574	0					50	29	2	0	0	0	0.61124	1	6835	6835		12.812	0.60503	1	165000			46153	4608	30517	30640	46743	46743					0.07810333339944009
VGRLILYSS	9	Unmodified	_VGRLILYSS_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.53411865234375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.58	1	47.58	47.08	48.08	0								0	0	0	0.31623	1	18983	18983		31.53	6.4038	1				46154	4608	30517	30640	46744	46744					0.07810333339944009
VGRLMRYL	8	Unmodified	_VGRLMRYL_					0	0	0		ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343322753906	3	336.532145	1006.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.242	1	43.242	42.742	43.742	0								0	0	0	1.7419	1	17301	17301		21.96	0	1				46155	1929	30518	30641	46745	46745					0.07158116907567091
VGRRVNHLG	9	Unmodified	_VGRRVNHLG_					0	0	0		ENST00000461408.2_1_15:59040902-59041232:-|nuORF	ENST00000461408.2_1_15:59040902-59041232:-|nuORF	ENST00000461408.2_1_15:59040902-59041232:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.53436279296875	3	336.533425	1006.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.262	1	36.262	35.762	36.762	0								0	0	0	0.37146	1	12975	12975		19.997	0.89325	1				46156	9732	30519	30642	46746	46746					0.07541922725658878
VGSATISH	8	Unmodified	_VGSATISH_					0	0	0		ENST00000544484.5_1_12:6707496-6708954:-|nuORF	ENST00000544484.5_1_12:6707496-6708954:-|nuORF	ENST00000544484.5_1_12:6707496-6708954:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.20330810546875	2	386.20341	770.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.998	1	12.998	12.498	13.498	0								0	0	0	1.7419	1	2909	2909		21.702	0	1				46157	10565	30520	30643	46747	46747					-0.00211319233528684
VGSEGLSKEQL	11	Unmodified	_VGSEGLSKEQL_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L;BCL9L|p.Q452Sfs*11|3|0.43|ENSG00000186174|chr11:118902389-118902389|G/-|frameshift_variant;BCL9L|p.P449Lfs*14|1|0.26|ENSG00000186174|chr11:118902397-118902397|G/-|frameshift_variant;BCL9L|p.G442Afs*21|2|0.19|ENSG00000186174|chr11:118902418-118902418|C/-|frameshift_variant;BCL9L|p.P483Rfs*19|1|0.35|ENSG00000186174|chr11:118902295-118902295|G/-|frameshift_variant;BCL9L|p.G481Afs*21|1|0.4|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant;BCL9L|p.P894Lfs*17|1|0.29|ENSG00000186174|chr11:118901062-118901062|G/-|frameshift_variant;BCL9L|p.P1127Hfs*21|1|0.43|ENSG00000186174|chr11:118899943-118899943|G/-|frameshift_variant;BCL9L|p.P1198Lfs*5|3|0.34|ENSG00000186174|chr11:118899327-118899327|C/-|frameshift_variant;BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant;BCL9L|p.P1355Lfs*6|1|0.23|ENSG00000186174|chr11:118898851-118898851|G/-|frameshift_variant;nc|ENSG00000186174|Q86UU0-4|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.8715515136719	3	382.871549	1145.59282	0.37189	0.00014239	-0.32403	-0.00012406	0.047862	1.8325E-05	382.87142948726427	14.124	0.30798	14.124	14.024	14.332	0					11	6	2	0	0	0	0.56817	1	3609	3609		41.08	0	1	933930			46158	11689	30521	30644	46748	46748					0.025844855726063543
VGSIAPVP	8	Unmodified	_VGSIAPVP_					0	0	0			REV__ENST00000305123.5_1_2:227662067-227662256:-|nuORF	REV__ENST00000305123.5_1_2:227662067-227662256:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	370.2212219238281	2	370.221072	738.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.523	1	21.523	21.023	22.023	0								0	0	0	1.7419	1	5941	5941		29.842	6.8048	1		+		46159	18236	30522	30645	46749	46749					0.047913432942777945
VGSIITSVV	9	Unmodified	_VGSIITSVV_					0	0	0		TM6SF1|p.M149T|1|0.43|ENSG00000136404|chr15:83121968-83121968|T/C|missense_variant	TM6SF1|p.M149T|1|0.43|ENSG00000136404|chr15:83121968-83121968|T/C|missense_variant	TM6SF1|p.M149T|1|0.43|ENSG00000136404|chr15:83121968-83121968|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.76593017578125	2	437.765843	873.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.675	1	40.675	40.175	41.175	0								0	0	0	0.35507	1	16169	16169		24.203	0	1				46160	22540	30523	30646	46750	46750					0.0753155318300287
VGSLHDRGK	9	Unmodified	_VGSLHDRGK_					0	0	0			REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.7677001953125	2	484.76724	967.519927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.379	1	41.379	40.879	41.879	0								0	0	0	0.27939	1	13756	13756		39.253	0.23134	1		+		46161	15107	30524	30647	46751	46751					0.034868213605250276
VGSLVHIAQ	9	Unmodified	_VGSLVHIAQ_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2690124511719	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.786	1	20.786	20.286	21.286	0								0	0	0	0.28996	1	6790	6790		37.159	0	1		+		46162	16642	30525	30648	46752	46752					0.05925491134371441
VGSMLHFF	8	Oxidation (M)	_VGSM(Oxidation (M))LHFF_		VGSM(1)LHFF		VGSM(45)LHFF	0	0	1			REV__ENST00000494086.5_1_7:107220736-107224412:+|nuORF	REV__ENST00000494086.5_1_7:107220736-107224412:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.232177734375	2	477.231113	952.447674	0.81696	0.00038988	0.37722	0.00018002	1.1942	0.0005699	477.23146081868936	36.673	0.21954	36.673	36.462	36.681	0					7	4	2	0	0	0	0.6282	1	14264	14264		44.531	8.9128	1	191370	+		46163	19743	30526	30649	46753	46753		720			-0.030452290374114455
VGSMYAGKI	9	Unmodified	_VGSMYAGKI_					0	0	0		tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.2437438964844	2	463.244221	924.473888	-0.75181	-0.00034827	-0.0010892	-5.0458E-07	-0.7529	-0.00034878	463.24437578795954	31.631	0.24453	31.631	31.552	31.796	0					15	9	2	0	0	0	0.37197	1	10501	10501		44.117	1.7207	1	178970			46164	22584	30527	30650	46754	46754					0.00863040134061066
VGSPAEEI	8	Unmodified	_VGSPAEEI_					0	0	0		nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	nc|ENSG00000168781|Q6PFW1-4|PPIP5K1	nc|ENSG00000168781|Q6PFW1-4|PPIP5K1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2042236328125	2	401.203076	800.391599	0.49061	0.00019684	3.6595	0.0014682	4.1501	0.001665	401.2041027180113	35.283	0.6713	35.283	35.113	35.784	0					24	13	3	0	0	0	0.64096	1	13616	13616		42.474	1.9018	1	422960			46165	6123	30528	30651	46755	46755					-0.016581586732513642
VGSRPGQH	8	Unmodified	_VGSRPGQH_					0	0	0		nc|ENSG00000160360|Q86YR5-3|GPSM1	nc|ENSG00000160360|Q86YR5-3|GPSM1	nc|ENSG00000160360|Q86YR5-3|GPSM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	419.2219543457031	2	419.219926	836.425299	1.0704	0.00044873	2.9285	0.0012277	3.9989	0.0016764	419.2209621379433	14.264	0.12653	14.264	14.223	14.349	0					5	3	2	0	0	0	0.70055	1	3452	3452		33.516	6.7195	1	101870			46166	11609	30529	30652	46756	46756					0.0005430760918443411
VGSRPPSAR	9	Unmodified	_VGSRPPSAR_					0	0	0			REV__nc|ENSG00000204842|Q99700-2|ATXN2	REV__nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7615966796875	2	463.761958	925.509363	-0.47983	-0.00022253	-0.045341	-2.1027E-05	-0.52517	-0.00024355	463.76193000206007	14.078	0.7574	14.078	13.817	14.575	0					36	15	4	0	0	0	0.10915	1	3357	3357		77.318	3.0625	1	2776800	+		46167	21192	30530	30653	46757	46757					0.04362838706083494
VGSSIGASTK	10	Unmodified	_VGSSIGASTK_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7477722167969	2	453.748182	905.481811	-0.0028652	-1.3001E-06	-1.3553	-0.00061497	-1.3582	-0.00061627	453.7476580462224	19.942	0.14182	19.942	19.901	20.043	0					6	4	2	0	0	0	0.52275	1	5263	5263		42.864	8.9426	1	48199	+		46168	17039	30531	30654	46758	46758					0.02528890655196392
VGSSLNIAL	9	Unmodified	_VGSSLNIAL_					0	0	0			REV__ENST00000483318.5_1_6:30879748-30879964:+|nuORF	REV__ENST00000483318.5_1_6:30879748-30879964:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2550048828125	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.709	1	31.709	31.209	32.209	0								0	0	0	0.27939	1	10950	10950		39.253	6.4404	1		+		46169	17567	30532	30655	46759	46759					0.055383825231729134
VGSTLGGLL	9	Unmodified	_VGSTLGGLL_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.74578857421875	2	408.744911	815.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.792	1	38.792	38.292	39.292	0								0	0	0	0.36766	1	15233	15233		20.482	2.1574	1				46170	4197	30533	30656	46760	46760					0.06014997494492036
VGSVFSLRSE	10	Unmodified	_VGSVFSLRSE_					0	0	0		ENST00000242592.8_1_12:121177481-121177736:+|nuORF	ENST00000242592.8_1_12:121177481-121177736:+|nuORF	ENST00000242592.8_1_12:121177481-121177736:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.861083984375	3	360.860984	1079.56112	1.4328	0.00051704	-1.0646	-0.00038419	0.36816	0.00013285	360.8605677600908	26.223	0.25878	26.223	26.117	26.376	0					9	5	2	0	0	0	0.65213	1	9375	9375		20.03	0	1	280600			46171	8219	30534	30657	46761	46761					0.024525376093379236
VGSVKENSRI	10	Unmodified	_VGSVKENSRI_					0	0	0		FAT3|p.F1046Lfs*9|1|0.5|ENSG00000165323|chr11:92524923-92524923|T/-|frameshift_variant;FAT3|p.A1047Cfs*51|2|0.18|ENSG00000165323|chr11:92524922-92524923|-/T|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3;FAT3|p.N1793Kfs*14|1|0.21|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;FAT3|p.V1884Sfs*21|1|0.26|ENSG00000165323|chr11:92799110-92799110|G/-|frameshift_variant;FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant;FAT3|p.P4078Rfs*36|1|0.42|ENSG00000165323|chr11:92883135-92883135|C/-|frameshift_variant;FAT3|p.V4210Cfs*6|1|0.05|ENSG00000165323|chr11:92889212-92889213|-/T|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.F1046Lfs*9|1|0.5|ENSG00000165323|chr11:92524923-92524923|T/-|frameshift_variant	FAT3|p.F1046Lfs*9|1|0.5|ENSG00000165323|chr11:92524923-92524923|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	363.5413513183594	3	363.540134	1087.59857	1.3269	0.00048239	1.6414	0.00059672	2.9683	0.0010791	363.5407806336621	22.236	0.75954	22.236	22.102	22.862	0					29	15	4	0	0	0	0.62149	1	7523	7523		31.634	2.4642	1	1173900			46172	5786	30535	30658	46762	46762					0.05827628874953916
VGTDKLRVTG	10	Unmodified	_VGTDKLRVTG_					0	0	0		ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.3031005859375	2	523.303655	1044.59276	0.058952	3.085E-05	0.91148	0.00047698	0.97043	0.00050783	523.3039719267941	50.15	0.89745	50.15	49.96	50.857	0					73	55	2	0	0	0	0.71938	1	15077	15077		19.104	0	1	77545			46173	2181	30536	30659	46763	46763					0.07224530363282611
VGTKEDIIK	9	Unmodified	_VGTKEDIIK_					0	0	0			REV__DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	REV__DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.7953796386719	2	501.795132	1001.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.307	1	26.307	25.807	26.807	0								0	0	0	0.29356	1	8452	8452		36.447	0	1		+		46174	12665	30537	30660	46764	46764					0.07498609757465147
VGTPIKQPP	9	Unmodified	_VGTPIKQPP_					0	0	0			REV__nc|ENSG809|P63128|ERVK-9_pol	REV__nc|ENSG809|P63128|ERVK-9_pol	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.7793273925781	2	468.779285	935.544017	-0.68836	-0.00032269	0.16761	7.8572E-05	-0.52075	-0.00024412	468.77937032046475	27.621	0.62896	27.621	27.414	28.043	0					22	15	2	0	0	0	0.39215	1	9070	9070		42.396	6.7778	1	75109	+		46175	21267	30538	30661	46765	46765					0.07366661794173979
VGTSGNSKV	9	Unmodified	_VGTSGNSKV_					0	0	0		ENST00000333891.13_1_7:82580025-82580196:-|nuORF	ENST00000333891.13_1_7:82580025-82580196:-|nuORF	ENST00000333891.13_1_7:82580025-82580196:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.72711181640625	2	424.727249	847.439946	-0.37067	-0.00015744	-0.12501	-5.3093E-05	-0.49568	-0.00021053	424.7274354463011	14.868	0.11685	14.868	14.811	14.928	0					4	2	2	0	0	0	0.50858	1	3810	3810		31.53	2.3803	1	81723			46176	8689	30539	30662	46766	46766					0.010123349666741888
VGTSLLAW	8	Unmodified	_VGTSLLAW_					0	0	0		CD300A|p.A196T|1|0.33|ENSG00000167851|chr17:74477488-74477488|G/A|missense_variant	CD300A|p.A196T|1|0.33|ENSG00000167851|chr17:74477488-74477488|G/A|missense_variant	CD300A|p.A196T|1|0.33|ENSG00000167851|chr17:74477488-74477488|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.74029541015625	2	423.739628	845.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.854	1	12.854	12.354	13.354	0								0	0	0	1.7419	1	2840	2840		37.028	0	1				46177	428	30540	30663	46767	46767					0.035790148400337785
VGTTSKDLPT	10	Unmodified	_VGTTSKDLPT_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	340.1853332519531	3	340.185356	1017.53424	0.52865	0.00017984	-0.35401	-0.00012043	0.17465	5.9413E-05	340.1852489675859	20.054	0.42011	20.054	19.944	20.364	0					12	8	3	0	0	0	0.46215	1	6449	6449		45.022	0	1	1041900	+		46178	16288	30541	30664	46768	46768					0.026174289981327092
VGTVRDPLR	9	Unmodified	_VGTVRDPLR_					0	0	0			REV__nc|ENSG00000055957|P19827-3|ITIH1	REV__nc|ENSG00000055957|P19827-3|ITIH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7985534667969	2	506.79854	1011.58253	-0.20214	-0.00010244	-0.13116	-6.647E-05	-0.33329	-0.00016891	506.7985607282214	22.995	0.46207	22.995	22.739	23.201	0					24	9	4	0	0	0	0.35021	1	7673	7673		45.972	9.5255	1	857850	+		46179	13057	30542	30665	46769	46769					0.07719967428704422
VGVFLRPR	8	Unmodified	_VGVFLRPR_					0	0	0		ENST00000537502.5_1_20:24988246-24988372:-|nuORF	ENST00000537502.5_1_20:24988246-24988372:-|nuORF	ENST00000537502.5_1_20:24988246-24988372:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.294921875	2	472.295436	942.57632	-0.023586	-1.1139E-05	-1.1808	-0.0005577	-1.2044	-0.00056884	472.2948462237846	36.93	0.16961	36.93	36.851	37.021	0					14	8	2	0	0	0	0.68754	1	12093	12093		35.201	2.3883	1	106030			46180	10502	30543	30666	46770	46770					0.1027349398784736
VGVGALAG	8	Unmodified	_VGVGALAG_					0	0	0			REV__ITGB3|p.R515Gfs*154|1|0.36|ENSG00000259207|chr17:47292417-47292417|C/-|frameshift_variant	REV__ITGB3|p.R515Gfs*154|1|0.36|ENSG00000259207|chr17:47292417-47292417|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	322.1937561035156	2	322.192314	642.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.823	1	31.823	31.323	32.323	0								0	0	0	1.7419	1	11938	11938		16.705	0	1		+		46181	17770	30544	30667	46771	46771					0.03458501088709909
VGVGVGVG	8	Unmodified	_VGVGVGVG_					0	0	0		nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	322.1935119628906	2	322.192314	642.370075	0.28858	9.2978E-05	3.0838	0.00099356	3.3723	0.0010865	322.19340656775523	31.574	0.10586	31.574	31.53	31.636	0					7	4	2	0	0	0	0.78431	1	10169	10169		10.185	0	1	35857			46182	2500	30545	30668	46772	46772					0.03458501088709909
VGVICPIIFV	10	Unmodified	_VGVICPIIFV_					0	0	0			REV__ENST00000254322.2_1_19:14625750-14625894:-|nuORF	REV__ENST00000254322.2_1_19:14625750-14625894:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.3173217773438	2	530.317189	1058.61982	2.3791	0.0012617	-1.7216	-0.00091301	0.65743	0.00034865	530.3161818013509	14.985	0.34976	14.985	14.902	15.252	0					10	8	2	0	0	0	0.661	1	3785	3785		26.796	1.3459	1	946590	+		46183	17975	30546	30669	46773	46773					0.09285922650110479
VGVQDHLL	8	Unmodified	_VGVQDHLL_					0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.74774169921875	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.8	1	36.8	36.3	37.3	0								0	0	0	1.7419	1	13906	13906		38.806	1.7777	1		+		46184	14329	30547	30670	46774	46774					0.03685515725987898
VGVQHISDIAQ	11	Unmodified	_VGVQHISDIAQ_					0	0	0			REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;REV__nc|ENSG00000151240|Q9Y2E4-2|DIP2C	REV__DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.5440368652344	3	389.543655	1165.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.572	1	12.572	12.072	13.072	0								0	0	0	0.23125	1	2707	2707		60.167	7.078	1		+		46185	12706;12707	30548	30671	46775	46775					0.032956115293927724
VGWGNEQAL	9	Unmodified	_VGWGNEQAL_					0	0	0			REV__nc|ENSG00000111674|P09104-2|ENO2	REV__nc|ENSG00000111674|P09104-2|ENO2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2415466308594	2	487.240524	972.466495	0.38717	0.00018864	2.1502	0.0010477	2.5374	0.0012363	487.2416791905577	19.546	0.14735	19.546	19.453	19.6	0					8	3	3	0	0	0	0.20551	1	5907	5907		60.972	2.19	1	253150	+		46186	13976	30549	30672	46776	46776					-0.020839761420006653
VGWGRRPR	8	Unmodified	_VGWGRRPR_					0	0	0		ENST00000394518.6_1_15:86287994-86288120:+|nuORF	ENST00000394518.6_1_15:86287994-86288120:+|nuORF	ENST00000394518.6_1_15:86287994-86288120:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.5257873535156	3	328.526382	982.557316	-1.9069	-0.00062648	0.18266	6.0009E-05	-1.7243	-0.00056647	328.52641805877	15.3	0.11502	15.3	15.226	15.341	0					7	3	3	0	0	0	0.72381	1	3405	3405		30.504	5.0535	1	3452700			46187	9177	30550	30673	46777	46777					0.06533957416797875
VGYAIIDS	8	Unmodified	_VGYAIIDS_					0	0	0			REV__ENSG00000110328|ENST00000227756|GALNT18	REV__ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	419.22186279296875	2	419.221268	836.427984	1.0546	0.0004421	0.32146	0.00013476	1.376	0.00057686	419.22141089990686	14.197	0.22125	14.197	14.137	14.358	0					7	4	2	0	0	0	0.72892	1	3490	3490		29.842	1.5873	1	1300500	+		46188	13931	30551	30674	46778	46778					0.003227182234695647
VGYFVDKQL	9	Unmodified	_VGYFVDKQL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	356.86224365234375	3	356.862325	1067.56515	-0.88906	-0.00031727	0.96157	0.00034315	0.072509	2.5876E-05	356.8625882528803	30.284	0.20758	30.284	30.214	30.422	0					15	6	3	0	0	0	0.61124	1	9933	9933		13.454	1.2474	1	249750			46189	5134;11594	30552	30675	46779	46779					0.034066271030496864
VHCIFKRV	8	Unmodified	_VHCIFKRV_					0	0	0			REV__nc|ENSG00000178982|Q9UBQ5-2|EIF3K	REV__nc|ENSG00000178982|Q9UBQ5-2|EIF3K	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.2906494140625	2	501.289297	1000.56404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.015	1	13.015	12.515	13.515	0								0	0	0	1.7419	1	2639	2639		14.664	0	1		+		46190	16757	30553	30676	46780	46780					0.06378134253145618
VHDKLSVK	8	Unmodified	_VHDKLSVK_					0	0	0			REV__KCNQ2|p.R442H|1|0.31|ENSG00000075043|chr20:63415103-63415103|C/T|missense_variant	REV__KCNQ2|p.R442H|1|0.31|ENSG00000075043|chr20:63415103-63415103|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.2764587402344	2	463.276909	924.539266	-0.14415	-6.6783E-05	-0.56161	-0.00026018	-0.70576	-0.00032696	463.27665263314157	21.087	0.21192	21.087	20.98	21.192	0					7	4	2	0	0	0	0.37144	1	6923	6923		74.255	0	1	462260	+		46191	20778	30554	30677	46781	46781					0.07397777651419801
VHDKLSVK	8	Unmodified	_VHDKLSVK_					0	0	0			REV__KCNQ2|p.R442H|1|0.31|ENSG00000075043|chr20:63415103-63415103|C/T|missense_variant	REV__KCNQ2|p.R442H|1|0.31|ENSG00000075043|chr20:63415103-63415103|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.276611328125	2	463.276909	924.539266	-0.47552	-0.0002203	-0.26674	-0.00012357	-0.74226	-0.00034387	463.27671606082043	21.051	0.16691	21.051	20.943	21.11	0					6	3	2	0	0	0	0.5535	1	6799	6799		54.776	1.8396	1	610850	+		46192	20778	30554	30677	46782	46782					0.07397777651419801
VHFCNPGFVT	10	Unmodified	_VHFCNPGFVT_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.1795654296875	3	374.17966	1119.51715	0.32799	0.00012273	-0.25541	-9.5568E-05	0.072588	2.7161E-05	374.1795879883614	33.182	0.88306	33.182	32.814	33.698	0					36	23	2	0	0	0	0.63073	1	12272	12272		28.081	1.3886	1	176310	+		46193	14987	30555	30678	46783	46783					-0.037827700886509774
VHGCLSVEQ	9	Unmodified	_VHGCLSVEQ_					0	0	0			REV__ENST00000246672.3_1_17:38252288-38252739:-|nuORF	REV__ENST00000246672.3_1_17:38252288-38252739:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2345886230469	2	486.234384	970.454216	3.4968	0.0017003	-3.3772	-0.0016421	0.11957	5.8137E-05	486.2326812338414	15.543	0.13606	15.543	15.459	15.595	0					6	4	2	0	0	0	0.13267	1	3558	3558		71.877	1.0613	1	168070	+		46194	17946	30556	30679	46784	46784					-0.03219335876690366
VHGKMGRANSA	11	Unmodified	_VHGKMGRANSA_					0	0	0		nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A	nc|ENSG00000169918|Q8TE49|OTUD7A	nc|ENSG00000169918|Q8TE49|OTUD7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.289794921875	2	564.290556	1126.56656	0.37296	0.00021046	-1.086	-0.00061281	-0.71303	-0.00040236	564.2898204665113	36.117	0.23863	36.117	36.008	36.247	0					16	6	3	0	0	0	0.35529	1	13592	13592		56.434	1.6575	1	413460			46195	6196	30557	30680	46785	46785					0.008339379201743213
VHILFSEVM	9	Oxidation (M)	_VHILFSEVM(Oxidation (M))_		VHILFSEVM(1)		VHILFSEVM(60)	0	0	1			REV__ENST00000371335.4_1_X:119571451-119571553:-|nuORF	REV__ENST00000371335.4_1_X:119571451-119571553:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.783203125	2	545.78371	1089.55287	0.40922	0.00022335	-2.6057	-0.0014221	-2.1965	-0.0011988	545.7826413478801	42.549	0.16629	42.549	42.481	42.647	0					15	9	2	0	0	0	0.21116	1	16101	16101		60.294	19.516	1	69317	+		46196	18653	30558	30681	46786	46786		693			0.011672673683506218
VHINEIGM	8	Unmodified	_VHINEIGM_					0	0	0			REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF	REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	456.7343444824219	2	456.73402	911.453487	0.038534	1.76E-05	-0.16236	-7.4157E-05	-0.12383	-5.6558E-05	456.734015023888	36.834	0.27627	36.834	36.744	37.021	0					17	14	2	0	0	0	0.59411	1	12084	12084		50.025	7.6284	1	58745	+		46197	13623	30559	30682	46787	46787					-0.005781305257301028
VHINSMQTE	9	Unmodified	_VHINSMQTE_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1;BICC1|p.I566Sfs*5|1|0.57|ENSG00000122870|chr10:58799217-58799217|A/-|frameshift_variant;BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7514038085938	2	529.750398	1057.48624	0.28646	0.00015175	1.007	0.00053344	1.2934	0.00068519	529.7508369278512	42.727	0.22058	42.727	42.649	42.869	0					14	10	2	0	0	0	0.25716	1	16750	16750		54.776	4.7518	1	130950			46198	3290	30560	30683	46788	46788					-0.04019968193551904
VHISKFDLQ	9	Unmodified	_VHISKFDLQ_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.8695373535156	3	362.869591	1085.58694	-0.10007	-3.6314E-05	-0.1324	-4.8043E-05	-0.23247	-8.4357E-05	362.8694959321791	22.933	0.17846	22.933	22.825	23.003	0					8	4	3	0	0	0	0.17854	1	6918	6918		53.089	0	1	181470	+		46199	14995	30561	30684	46789	46789					0.04757431851612637
VHKEKGANK	9	Unmodified	_VHKEKGANK_					0	0	0		nc|ENSG00000005889|P17010-2|ZFX;nc|ENSG00000067646|P08048-2|ZFY;ZFY|p.M685Cfs*17|2|0.62|ENSG00000067646|chrY:2979634-2979634|A/-|frameshift_variant;nc|ENSG00000067646|P08048-3|ZFY;ENSG00000067646|ENST00000155093|ZFY;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-2|ZFX	nc|ENSG00000005889|P17010-2|ZFX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.79071044921875	2	505.790715	1009.56688	1.0691	0.00054072	-1.1557	-0.00058454	-0.086631	-4.3817E-05	505.79007565119923	13.104	0.23805	13.104	13.012	13.25	0					9	5	2	0	0	0	0.34452	1	3120	3120		47.657	12.039	1	1315100			46200	968	30562	30685	46790	46790					0.062476809116560617
VHKEKGANK	9	Unmodified	_VHKEKGANK_					0	0	0		nc|ENSG00000005889|P17010-2|ZFX;nc|ENSG00000067646|P08048-2|ZFY;ZFY|p.M685Cfs*17|2|0.62|ENSG00000067646|chrY:2979634-2979634|A/-|frameshift_variant;nc|ENSG00000067646|P08048-3|ZFY;ENSG00000067646|ENST00000155093|ZFY;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-2|ZFX	nc|ENSG00000005889|P17010-2|ZFX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7912292480469	2	505.790715	1009.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.863	1	12.863	12.363	13.363	0								0	0	0	0.22075	1	2528	2528		58.782	12.83	1				46201	968	30562	30685	46791	46791					0.062476809116560617
VHLEHGVVY	9	Unmodified	_VHLEHGVVY_					0	0	0		nc|ENSG00000124126|Q8TCU6-2|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant	nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-2|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7794799804688	2	526.779816	1051.54508	0.3912	0.00020607	0.63764	0.00033589	1.0288	0.00054197	526.7802336675771	28.276	0.31007	28.276	28.074	28.384	0					25	11	3	0	0	0	0.27781	1	9056	9056		52.299	18.784	1	199920			46202	3345	30563	30686	46792	46792					0.021368761630810695
VHLIRTGSQ	9	Unmodified	_VHLIRTGSQ_					0	0	0		POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant;ENSG00000186141|ENST00000334163|POLR3C	POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant	POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.79150390625	2	505.790715	1009.56688	-0.74211	-0.00037535	1.5471	0.00078252	0.80501	0.00040717	505.7917355305106	12.874	0.075346	12.874	12.834	12.909	0					7	4	2	0	0	0	0.24334	1	2589	2589		58.782	10.866	1	89714			46203	7123	30564	30687	46793	46793					0.062476809116560617
VHLNKRSR	8	Unmodified	_VHLNKRSR_					0	0	0			REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.306884765625	2	505.304324	1008.5941	3.7034	0.0018713	-0.45379	-0.0002293	3.2496	0.001642	505.30412048542377	29.967	0.57375	29.967	29.859	30.432	0					40	20	3	0	0	0	0.74117	1	9929	9929		28.254	2.8041	1	472330	+		46204	12729	30565	30688	46794	46794					0.0901420924269587
VHPSHGLF	8	Unmodified	_VHPSHGLF_					0	0	0			REV__nc|ENSG00000165521|Q05BV3|EML5	REV__nc|ENSG00000165521|Q05BV3|EML5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2332458496094	2	447.235045	892.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.345	1	39.345	38.845	39.845	0								0	0	0	1.7419	1	12783	12783		15.636	0	1		+		46205	16048	30566	30689	46795	46795					0.005006662743767265
VHPTLSCN	8	Unmodified	_VHPTLSCN_					0	0	0			REV__nc|ENSG00000081842|Q9UN73-2|PCDHA6	REV__nc|ENSG00000081842|Q9UN73-2|PCDHA6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.7110595703125	2	435.710545	869.406537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.358	1	33.358	32.858	33.858	0								0	0	0	1.7419	1	12761	12761		47.916	14.4	1		+		46206	13309	30567	30690	46796	46796					-0.03338990076883874
VHQLTLEVI	9	Unmodified	_VHQLTLEVI_					0	0	0		ENST00000463753.5_1_3:99357381-99394559:+|nuORF	ENST00000463753.5_1_3:99357381-99394559:+|nuORF	ENST00000463753.5_1_3:99357381-99394559:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	351.2092590332031	3	351.209725	1050.60735	0.41611	0.00014614	-1.223	-0.00042952	-0.80687	-0.00028338	351.20925273844534	23.409	0.1183	23.409	23.298	23.416	0					6	3	2	0	0	0	0.45358	1	6767	6767		36.447	0	1	83358			46207	9762	30568	30691	46797	46797					0.08406602511445271
VHRLLGGG	8	Unmodified	_VHRLLGGG_					0	0	0			REV__ENST00000399813.1_1_22:18043396-18070735:+|nuORF	REV__ENST00000399813.1_1_22:18043396-18070735:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.7425842285156	2	404.743037	807.471521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.326	1	18.326	17.826	18.826	0								0	0	0	1.7419	1	4767	4767		4.6817	0	1		+		46208	18939	30569	30692	46798	46798					0.06008372511291782
VHSGVLTYGTN	11	Unmodified	_VHSGVLTYGTN_					0	0	0			REV__ENSG00000183117|ENST00000635120|CSMD1	REV__ENSG00000183117|ENST00000635120|CSMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.29052734375	2	574.290745	1146.56694	-0.11161	-6.4098E-05	-0.45986	-0.00026409	-0.57147	-0.00032819	574.2904748081156	12.716	0.45288	12.716	12.625	13.078	0					32	13	4	0	0	0	0.53842	1	2722	2722		41.427	3.6151	1	2007400	+		46209	16916	30570	30693	46799	46799					-0.00048363879000135057
VHWNGRVHR	9	Unmodified	_VHWNGRVHR_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.8126831054688	2	580.812848	1159.61114	-0.027784	-1.6137E-05	-0.41043	-0.00023838	-0.43821	-0.00025452	580.8126403841346	18.679	0.21456	18.679	18.588	18.803	0					20	5	5	0	0	0	0.27249	1	5496	5496		55.504	9.5523	1	4098200			46210	6780	30571	30694	46800	46800					0.037721298484939325
VHYAAGNVEA	10	Unmodified	_VHYAAGNVEA_					0	0	0		sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1;sp|F5H9T4|UL09_HCMVMMembraneglycoproteinUL9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL9PE=3SV=1	sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1	sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7516479492188	2	515.751256	1029.48796	0.16926	8.7298E-05	0.087475	4.5116E-05	0.25674	0.00013241	515.7512730714144	27.87	0.26285	27.87	27.763	28.026	0					11	5	3	0	0	0	0.39566	1	10039	10039		56.721	0	1	482720			46211	22435	30572	30695	46801	46801					-0.025605911132970505
VIAALTVPAL	10	Unmodified	_VIAALTVPAL_					0	0	0		ENST00000494318.5_1_8:76320198-76402347:+|nuORF	ENST00000494318.5_1_8:76320198-76402347:+|nuORF	ENST00000494318.5_1_8:76320198-76402347:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.31292724609375	2	484.312961	966.611368	0.86414	0.00041851	-0.84343	-0.00040848	0.020705	1.0028E-05	484.3124987802221	41.317	0.13995	41.317	41.186	41.326	0					5	3	2	0	0	0	0.54387	1	16418	16418		40.573	1.7665	1	106330			46212	10096	30573	30696	46802	46802					0.12672692005139652
VIAESVVKK	9	Unmodified	_VIAESVVKK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.8078918457031	2	486.808042	971.601532	0.004203	2.0461E-06	-0.29176	-0.00014203	-0.28755	-0.00013998	486.80791484781713	20.555	0.11306	20.555	20.483	20.596	0					9	3	3	0	0	0	0.048471	1	5509	5509		95.815	21.56	1	624120			46213	2740	30574	30697	46803	46803					0.11459503999765275
VIAESVVKK	9	Unmodified	_VIAESVVKK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.8078308105469	2	486.808042	971.601532	-0.31651	-0.00015408	-0.080115	-3.9001E-05	-0.39663	-0.00019308	486.8079713873682	20.888	0.14894	20.888	20.782	20.931	0					9	3	3	0	0	0	0.01873	1	6544	6544		124.08	41.84	1	3417400			46214	2740	30574	30697	46804	46804					0.11459503999765275
VIAESVVKK	9	Unmodified	_VIAESVVKK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.8079833984375	2	486.808042	971.601532	-0.90395	-0.00044005	0.30257	0.00014729	-0.60139	-0.00029276	486.8081472251798	20.582	0.11171	20.582	20.514	20.626	0					6	3	2	0	0	0	0.035062	1	5763	5763		104.06	19.141	1	334770			46215	2740	30574	30697	46805	46805					0.11459503999765275
VIAESVVKK	9	Unmodified	_VIAESVVKK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.8079833984375	2	486.808042	971.601532	-0.6976	-0.0003396	0.45899	0.00022344	-0.23861	-0.00011616	486.8082080085827	20.805	0.1676	20.805	20.696	20.863	0					10	3	4	0	0	0	0.012231	1	6785	6785		136.27	43.073	1	1431300			46216	2740	30574	30697	46806	46806					0.11459503999765275
VIAESVVKK	9	Unmodified	_VIAESVVKK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	324.8742980957031	3	324.874454	971.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.648	1	20.648	20.148	21.148	0								0	0	0	0.35899	1	5845	5845		37.812	6.2817	1				46217	2740	30574	30697	46807	46807					0.11459503999765275
VIAEWRREL	9	Unmodified	_VIAEWRREL_					0	0	0			REV__AKAP6|p.E1418Kfs*19|1|0.26|ENSG00000151320|chr14:32822061-32822061|G/-|frameshift_variant	REV__AKAP6|p.E1418Kfs*19|1|0.26|ENSG00000151320|chr14:32822061-32822061|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	391.225341796875	3	391.224257	1170.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.277	1	18.277	17.777	18.777	0								0	0	0	0.34845	1	4747	4747		25.574	0	1		+		46218	12128	30575	30698	46808	46808					0.07244212008549766
VIAFGSAHLY	10	Unmodified	_VIAFGSAHLY_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.2894897460938	2	539.290017	1076.56548	0.25069	0.00013519	0.39098	0.00021085	0.64167	0.00034605	539.290124673746	45.089	0.17206	45.089	45.015	45.187	0					16	10	2	0	0	0	0.61887	1	16823	16823		31.955	1.4512	1	106040			46219	7429	30576	30699	46809	46809					0.030260468229016624
VIAGQIVNL	9	Unmodified	_VIAGQIVNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.7867431640625	2	463.78711	925.559667	-2.3872	-0.0011071	1.5216	0.00070569	-0.86557	-0.00040144	463.787846457119	30.58	0.34409	30.58	30.42	30.764	0					15	9	2	0	0	0	0.49003	1	10457	10457		33.516	1.5607	1	67191			46220	2991	30577	30700	46810	46810					0.09390948311227021
VIAGVLTIAL	10	Unmodified	_VIAGVLTIAL_					0	0	0		KCNA2|p.A395V|1|0.2|ENSG00000177301|chr1:110603599-110603599|G/A|missense_variant	KCNA2|p.A395V|1|0.2|ENSG00000177301|chr1:110603599-110603599|G/A|missense_variant	KCNA2|p.A395V|1|0.2|ENSG00000177301|chr1:110603599-110603599|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.32037353515625	2	485.320786	968.627018	0.65464	0.00031771	-1.2788	-0.00062061	-0.62413	-0.00030291	485.32007376395825	42.446	0.30418	42.446	42.26	42.564	0					35	15	3	0	0	0	0.61887	1	16619	16619		31.955	1.4512	1	203810			46221	11241	30578	30701	46811	46811					0.14144978522176643
VIAKRKEDYG	10	Unmodified	_VIAKRKEDYG_					0	0	0		AEBP2|p.S442Y|1|0.12|ENSG00000139154|chr12:19512423-19512423|C/A|missense_variant	AEBP2|p.S442Y|1|0.12|ENSG00000139154|chr12:19512423-19512423|C/A|missense_variant	AEBP2|p.S442Y|1|0.12|ENSG00000139154|chr12:19512423-19512423|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.8310546875	2	589.830037	1177.64552	0.12222	7.2087E-05	0.70136	0.00041368	0.82358	0.00048577	589.8305899578612	23.097	0.18411	23.097	22.962	23.146	0					10	6	2	0	0	0	0.72365	1	6619	6619		18.262	0	1	51077			46222	85	30579	30702	46812	46812					0.0638048842608896
VIAKYMPTE	9	Unmodified	_VIAKYMPTE_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2805786132812	2	526.27826	1050.54197	0.47874	0.00025195	3.3461	0.001761	3.8248	0.0020129	526.2801462754784	18.554	0.14095	18.554	18.485	18.626	0					7	4	2	0	0	0	0.61124	1	4874	4874		16.473	4.2663	1	796840			46223	3581	30580	30703	46813	46813					0.018718649940637988
VIALAGLPPS	10	Unmodified	_VIALAGLPPS_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2;POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant;POM121L2|p.D642Gfs*77|1|0.06|ENSG00000158553|chr6:27310248-27310249|-/TACAATTCCT|frameshift_variant	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.289306640625	2	469.289485	936.564418	0.01946	9.1326E-06	-0.36578	-0.00017166	-0.34632	-0.00016253	469.2893765581397	29.688	0.7188	29.688	29.16	29.879	0					40	27	2	0	0	0	0.64178	1	9402	9402		29.15	4.9468	1	74606			46224	5270	30581	30704	46814	46814					0.09359832453992567
VIALAGLPPS	10	Unmodified	_VIALAGLPPS_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2;POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant;POM121L2|p.D642Gfs*77|1|0.06|ENSG00000158553|chr6:27310248-27310249|-/TACAATTCCT|frameshift_variant	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.28936767578125	2	469.289485	936.564418	-1.18	-0.00055377	0.44448	0.00020859	-0.73552	-0.00034517	469.2897116713038	29.728	0.62771	29.728	29.231	29.859	0					42	24	2	0	0	0	0.64178	1	9709	9709		29.15	0	1	109230			46225	5270	30581	30704	46815	46815					0.09359832453992567
VIANWSDVAA	10	Unmodified	_VIANWSDVAA_					0	0	0			REV__ENST00000495008.5_1_3:108373019-108406879:+|nuORF	REV__ENST00000495008.5_1_3:108373019-108406879:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2673950195312	2	523.269281	1044.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.416	1	15.416	14.916	15.916	0								0	0	0	0.37602	1	4211	4211		37.812	15.852	1		+		46226	17450	30582	30705	46816	46816					0.0035286606357658457
VIAQLTIIP	9	Unmodified	_VIAQLTIIP_					0	0	0		ENST00000537589.1_2_2:65301228-65301667:+|nuORF	ENST00000537589.1_2_2:65301228-65301667:+|nuORF	ENST00000537589.1_2_2:65301228-65301667:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.3127136230469	2	484.312961	966.611368	-0.5843	-0.00028299	0.14522	7.0334E-05	-0.43908	-0.00021265	484.3128926300462	41.291	0.14503	41.291	41.198	41.343	0					5	3	2	0	0	0	0.43426	1	16426	16426		38.806	5.2906	1	55665			46227	10505	30583	30706	46817	46817					0.12672692005139652
VIAYPSNAAS	10	Unmodified	_VIAYPSNAAS_					0	0	0			REV__ENST00000519890.5_1_5:158126121-158500600:-|nuORF	REV__ENST00000519890.5_1_5:158126121-158500600:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7575988769531	2	496.756007	991.497461	3.4041	0.001691	0.50841	0.00025255	3.9125	0.0019436	496.7561867900515	21.229	0.17227	21.229	21.131	21.304	0					10	5	3	0	0	0	0.37692	1	6056	6056		58.782	2.0609	1	159630	+		46228	15985	30584	30707	46818	46818					0.0013717717223471482
VIDAKKLLSE	10	Unmodified	_VIDAKKLLSE_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;DMXL1|p.N3021Mfs*3|1|0.28|ENSG00000172869|chr5:119247193-119247193|A/-|frameshift_variant;ENSG00000172869|ENST00000539542|DMXL1;DMXL1|p.S1844Vfs*9|1|0.1|ENSG00000172869|chr5:119170317-119170317|A/-|frameshift_variant;ENST00000512281.1_1_5:118470015-118483170:+|nuORF;DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant;DMXL1|p.F1668Lfs*15|1|0.41|ENSG00000172869|chr5:119166644-119166644|T/-|frameshift_variant;DMXL1|p.L1702Sfs*11|1|0.37|ENSG00000172869|chr5:119166742-119166743|-/T|frameshift_variant	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	372.5596008300781	3	372.560535	1114.65977	0.49704	0.00018518	0.22791	8.4909E-05	0.72495	0.00027009	372.5604797515241	18.15	0.22108	18.15	17.999	18.22	0					17	7	3	0	0	0	0.61238	1	4453	4453		32.751	0	1	254890			46229	807	30585	30708	46819	46819					0.10703140854388948
VIDANHSLL	9	Unmodified	_VIDANHSLL_					0	0	0			REV__TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	REV__TRPA1|p.T673Hfs*23|1|0.45|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2712097167969	2	491.271824	980.529095	0.58519	0.00028749	-1.0715	-0.00052639	-0.48629	-0.0002389	491.2712242576152	38.869	0.16886	38.869	38.791	38.96	0					15	6	3	0	0	0	0.48389	1	15249	15249		34.173	6.2903	1	228440	+		46230	13718	30586	30709	46820	46820					0.03805169926192775
VIDNGSGMCK	10	Carbamidomethyl (C)	_VIDNGSGMC(Carbamidomethyl (C))K_	VIDNGSGMC(1)K		VIDNGSGMC(110)K		0	1	0		ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEF|p.R728Gfs*16|3|0.06|ENSG00000196604|chr2:130075290-130075290|G/-|frameshift_variant;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7445678710938	2	540.744259	1079.47396	1.9115	0.0010336	-1.3848	-0.00074881	0.52673	0.00028483	540.7436562677256	20.25	0.20312	20.25	20.153	20.356	0					9	4	3	0	0	0	0.049666	1	6262	6262		109.44	48.467	1	1018200			46231	6995;7397;7857	30587	30710	46821	46821	296				-0.06259327928228231
VIDNGSGMCK	10	Carbamidomethyl (C)	_VIDNGSGMC(Carbamidomethyl (C))K_	VIDNGSGMC(1)K		VIDNGSGMC(130)K		0	1	0		ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEF|p.R728Gfs*16|3|0.06|ENSG00000196604|chr2:130075290-130075290|G/-|frameshift_variant;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7445068359375	2	540.744259	1079.47396	2.0808	0.0011252	-2.1132	-0.0011427	-0.032386	-1.7513E-05	540.7433001249136	20.135	0.21563	20.135	20.027	20.243	0					9	4	3	0	0	0	0.01518	1	6359	6359		128.6	43.243	1	992380			46232	6995;7397;7857	30587	30710	46822	46822	296				-0.06259327928228231
VIDQDMATRLK	11	Unmodified	_VIDQDMATRLK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.56744384765625	3	430.567583	1288.68092	0.78311	0.00033718	-1.4562	-0.000627	-0.67311	-0.00028982	430.5671066016326	28.693	0.21527	28.693	28.603	28.818	0					17	5	5	0	0	0	0.50799	1	10199	10199		43.651	13.082	1	631610			46233	1919	30588	30711	46823	46823					0.04812782891576717
VIDQDMATRLK	11	Unmodified	_VIDQDMATRLK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	645.3475952148438	2	645.347737	1288.68092	-0.57871	-0.00037347	0.53781	0.00034708	-0.040895	-2.6391E-05	645.3486270135775	28.704	0.11687	28.704	28.645	28.762	0					4	2	2	0	0	0	0.46278	1	10562	10562		30.569	0	1	89450			46234	1919	30588	30711	46824	46824					0.04812782891576717
VIDQDMATRLK	11	Unmodified	_VIDQDMATRLK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.5674133300781	3	430.567583	1288.68092	0.97483	0.00041973	-1.4722	-0.00063386	-0.49733	-0.00021413	430.5670789410264	28.649	0.26782	28.649	28.542	28.809	0					14	5	4	0	0	0	0.32196	1	10416	10416		60.167	7.9998	1	1700300			46235	1919	30588	30711	46825	46825					0.04812782891576717
VIDRQIEK	8	Unmodified	_VIDRQIEK_					0	0	0		tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.1978759765625	3	334.197708	999.571294	0.55476	0.0001854	-0.47705	-0.00015943	0.07771	2.5971E-05	334.1976575812424	15.17	0.088044	15.17	15.138	15.226	0					5	3	2	0	0	0	0.66095	1	3351	3351		33.922	0	1	111630			46236	22638	30589	30712	46826	46826					0.07149145334562945
VIDSVTKKR	9	Unmodified	_VIDSVTKKR_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3223876953125	2	523.321848	1044.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.237	1	17.237	16.737	17.737	0								0	0	0	0.19749	1	4255	4255		51.335	1.7994	1				46237	4990	30590	30713	46827	46827					0.10861407259994849
VIDVLPEKM	9	Unmodified	_VIDVLPEKM_					0	0	0			REV__nc|ENSG00000111218|Q9NR22-2|PRMT8	REV__nc|ENSG00000111218|Q9NR22-2|PRMT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.2957153320312	2	522.293911	1042.57327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.021	1	16.021	15.521	16.521	0								0	0	0	0.29356	1	3579	3579		29.15	0	1		+		46238	13957	30591	30714	46828	46828					0.053684380281538324
VIEFSEEY	8	Unmodified	_VIEFSEEY_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2333068847656	2	508.234573	1014.45459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.325	1	20.325	19.825	20.825	0								0	0	0	1.7419	1	5693	5693		44.531	3.9584	1				46239	3096	30592	30715	46829	46829					-0.05205637675851449
VIEGSLQPI	9	Unmodified	_VIEGSLQPI_					0	0	0		nc|ENSG00000133110|Q15063-10|POSTN;nc|ENSG00000133110|Q15063-9|POSTN;nc|ENSG00000133110|Q15063-8|POSTN;ENSG00000133110|ENST00000379747|POSTN	nc|ENSG00000133110|Q15063-10|POSTN	nc|ENSG00000133110|Q15063-10|POSTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.2760314941406	2	478.276575	954.538597	-0.32476	-0.00015533	-0.28486	-0.00013624	-0.60962	-0.00029157	478.27653541235793	31.973	0.27922	31.973	31.84	32.119	0					13	8	2	0	0	0	0.35021	1	11072	11072		45.972	3.5761	1	93073			46240	3840	30593	30716	46830	46830					0.0595093821170849
VIEHIQVNK	9	Unmodified	_VIEHIQVNK_					0	0	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.3142700195312	2	540.314023	1078.61349	1.9338	0.0010449	-0.96773	-0.00052288	0.96608	0.00052199	540.3131549595125	22.476	0.14706	22.476	22.384	22.531	0					8	3	3	0	0	0	0.032052	1	7321	7321		107.01	42.8	1	539390			46241	8068	30594	30717	46831	46831					0.07733120742932442
VIEHIQVNK	9	Unmodified	_VIEHIQVNK_					0	0	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.3143920898438	2	540.314023	1078.61349	-0.014723	-7.9549E-06	0.87744	0.00047409	0.86272	0.00046614	540.314326885097	22.175	0.13573	22.175	22.101	22.236	0					8	4	3	0	0	0	0.035062	1	6494	6494		104.06	37.628	1	163800			46242	8068	30594	30717	46832	46832					0.07733120742932442
VIEHIQVNK	9	Unmodified	_VIEHIQVNK_					0	0	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	360.54510498046875	3	360.545108	1078.61349	1.4309	0.00051592	-1.2096	-0.00043613	0.22129	7.9785E-05	360.544617754547	22.358	0.21523	22.358	22.253	22.468	0					9	4	3	0	0	0	0.41113	1	7568	7568		56.434	29.386	1	1296700			46243	8068	30594	30717	46833	46833					0.07733120742932442
VIEHIQVNK	9	Unmodified	_VIEHIQVNK_					0	0	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.3143310546875	2	540.314023	1078.61349	1.9751	0.0010672	-0.88917	-0.00048043	1.0859	0.00058672	540.3133242121186	22.358	0.21523	22.358	22.253	22.468	0					6	4	2	0	0	0	0.035062	1	7571	7571		104.06	30.082	1	1138200			46244	8068	30594	30717	46834	46834					0.07733120742932442
VIEHIQVNK	9	Unmodified	_VIEHIQVNK_					0	0	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.5450744628906	3	360.545108	1078.61349	1.2192	0.00043959	-0.94414	-0.0003404	0.27511	9.9191E-05	360.54472562080787	22.378	0.21924	22.378	22.27	22.489	0					13	4	4	0	0	0	0.39215	1	7447	7447		58.23	30.148	1	1245200			46245	8068	30594	30717	46835	46835					0.07733120742932442
VIEHIQVNK	9	Unmodified	_VIEHIQVNK_					0	0	0		ENST00000446498.1_1_1:26781156-26781564:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.3145751953125	2	540.314023	1078.61349	2.0943	0.0011316	0.060723	3.2809E-05	2.155	0.0011644	540.3134970077494	22.378	0.16809	22.378	22.27	22.438	0					10	3	4	0	0	0	0.028876	1	7448	7448		110.12	55.344	1	740440			46246	8068	30594	30717	46836	46836					0.07733120742932442
VIEVGKLKS	9	Unmodified	_VIEVGKLKS_					0	0	0		tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.8079528808594	2	486.808042	971.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.84	1	29.84	29.34	30.34	0								0	0	0	0.3428	1	9450	9450		26.693	3.1702	1				46247	22713	30595	30718	46837	46837					0.11459503999753906
VIFANTTSIVT	11	Unmodified	_VIFANTTSIVT_					0	0	0		sp|Q6SWC9|RL13_HCMVMMembraneproteinRL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL13PE=3SV=1	sp|Q6SWC9|RL13_HCMVMMembraneproteinRL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL13PE=3SV=1	sp|Q6SWC9|RL13_HCMVMMembraneproteinRL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL13PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	583.329345703125	2	583.326796	1164.63904	3.2249	0.0018812	1.1065	0.00064546	4.3314	0.0025266	583.3275018627915	17.708	0.16863	17.708	17.649	17.817	0					7	3	3	0	0	0	0.1082	1	5169	5169		87.696	5.4559	1	853060			46248	22482	30596	30719	46838	46838					0.06330550474672236
VIFCNTKRK	9	Carbamidomethyl (C)	_VIFC(Carbamidomethyl (C))NTKRK_	VIFC(1)NTKRK		VIFC(62)NTKRK		0	1	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.328857421875	2	583.32915	1164.64375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.452	1	17.452	16.952	17.952	0								0	0	0	0.14033	1	4163	4163		62.107	16.135	1				46249	4457	30597	30720	46839	46839	187				0.06801156136452846
VIFCNTKRK	9	Carbamidomethyl (C)	_VIFC(Carbamidomethyl (C))NTKRK_	VIFC(1)NTKRK		VIFC(140)NTKRK		0	1	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	583.3294067382812	2	583.32915	1164.64375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.793	1	17.793	17.293	18.293	0								0	0	0	0.0005774	1	5084	5084		138.83	74.618	1				46250	4457	30597	30720	46840	46840	187				0.06801156136452846
VIFIIIFSY	9	Unmodified	_VIFIIIFSY_					0	0	0		ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.2239685058594	3	372.223083	1113.64742	3.2141	0.0011964	-0.54327	-0.00020222	2.6709	0.00099416	372.22292591827824	29.332	0.60781	29.332	29.174	29.781	0					22	12	4	0	0	0	0.30951	1	10722	10722		49.442	49.442	1	934230			46251	5789	30598	30721	46841	46841					0.09514149181973153
VIFKDFVNK	9	Unmodified	_VIFKDFVNK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.3218383789062	2	555.321317	1108.62808	1.8132	0.0010069	-0.98007	-0.00054425	0.83317	0.00046268	555.3210332360426	34.284	0.32339	34.284	34.181	34.505	0					17	8	3	0	0	0	0.095583	1	12760	12760		80.455	21.673	1	283910			46252	6453	30599	30722	46842	46842					0.07811192891063001
VIFKDFVNK	9	Unmodified	_VIFKDFVNK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.32177734375	2	555.321317	1108.62808	1.0518	0.0005841	-0.0168	-9.3295E-06	1.035	0.00057477	555.321145731971	34.253	0.30723	34.253	34.101	34.409	0					15	6	3	0	0	0	0.020674	1	13099	13099		120.87	49.573	1	404030			46253	6453	30599	30722	46843	46843					0.07811192891063001
VIFKDFVNK	9	Unmodified	_VIFKDFVNK_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.54974365234375	3	370.54997	1108.62808	0.83395	0.00030902	-0.82078	-0.00030414	0.013179	4.8836E-06	370.54952227103456	34.236	0.50104	34.236	34.037	34.538	0					38	10	5	0	0	0	0.42902	1	13091	13091		46.457	13.706	1	1823700			46254	6453	30599	30722	46844	46844					0.07811192891063001
VIFPLHIV	8	Unmodified	_VIFPLHIV_					0	0	0			REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF	REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2986755371094	2	469.297114	936.579674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.484	1	36.484	35.984	36.984	0								0	0	0	1.7419	1	12361	12361		24.504	0	1		+		46255	19333	30600	30723	46845	46845					0.10884744041857175
VIFTGGVGK	9	Unmodified	_VIFTGGVGK_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2607116699219	2	439.260728	876.506903	-0.36591	-0.00016073	-0.36035	-0.00015829	-0.72626	-0.00031902	439.2606565570616	30.017	0.66172	30.017	29.868	30.529	0					50	14	5	0	0	0	0.0061615	1	11164	11164		153.04	42.699	1	32701000			46256	3904	30601	30724	46846	46846					0.06370990248433372
VIFTGGVGK	9	Unmodified	_VIFTGGVGK_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2607727050781	2	439.260728	876.506903	0.62552	0.00027477	-1.027	-0.00045112	-0.40149	-0.00017636	439.26024491702816	30	0.56388	30	29.9	30.464	0					34	12	5	0	0	0	0.035062	1	11157	11157		104.06	30.082	1	10789000			46257	3904	30601	30724	46847	46847					0.06370990248433372
VIFTGGVGK	9	Unmodified	_VIFTGGVGK_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.26080322265625	2	439.260728	876.506903	-0.58903	-0.00025874	0.13734	6.0327E-05	-0.4517	-0.00019841	439.26077305903937	29.806	0.53524	29.806	29.694	30.229	0					41	14	5	0	0	0	0.10915	1	10048	10048		77.318	29.402	1	5136600			46258	3904	30601	30724	46848	46848					0.06370990248433372
VIFTGGVGK	9	Unmodified	_VIFTGGVGK_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.26068115234375	2	439.260728	876.506903	-0.56695	-0.00024904	-0.020722	-9.1023E-06	-0.58767	-0.00025814	439.2607813677691	29.956	0.61203	29.956	29.846	30.458	0					44	12	5	0	0	0	0.016683	1	11020	11020		127.46	3.4729	1	32298000			46259	3904	30601	30724	46849	46849					0.06370990248433372
VIFWLESY	8	Unmodified	_VIFWLESY_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.7725830078125	2	528.773668	1055.53278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.904	1	10.904	10.404	11.404	0								0	0	0	1.7419	1	2126	2126		12.959	2.6939	1		+		46260	13001	30602	30725	46850	46850					0.007238397000492114
VIGPKGMLK	9	Unmodified	_VIGPKGMLK_					0	0	0		nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7939758300781	2	471.793881	941.573209	-0.12369	-5.8354E-05	0.041338	1.9503E-05	-0.082348	-3.8851E-05	471.7938189024264	25.712	0.26502	25.712	25.552	25.817	0					7	4	2	0	0	0	0.18605	1	9149	9149		63.306	63.306	1	101560			46261	2222	30603	30726	46851	46851					0.1000848281881872
VIGPKGMLK	9	Unmodified	_VIGPKGMLK_					0	0	0		nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	nc|ENSG00000103222|P33527-6|ABCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.7933044433594	2	471.793881	941.573209	-0.5597	-0.00026406	-0.47563	-0.0002244	-1.0353	-0.00048846	471.79367561712166	25.628	0.36603	25.628	25.414	25.78	0					15	6	3	0	0	0	0.45358	1	9005	9005		37.159	5.2042	1	256630			46262	2222	30603	30726	46852	46852					0.1000848281881872
VIHNDTVL	8	Unmodified	_VIHNDTVL_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.7530212402344	2	455.753267	909.491981	0.73744	0.00033609	-1.1704	-0.00053343	-0.43301	-0.00019734	455.75279286368846	38.723	0.14668	38.723	38.648	38.795	0					10	6	2	0	0	0	0.65276	1	14713	14713		40.573	0	1	86116			46263	7837	30604	30727	46853	46853					0.03361498380422745
VIHTEKPL	8	Unmodified	_VIHTEKPL_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.77935791015625	2	468.779285	935.544017	0.27269	0.00012783	-1.3136	-0.00061579	-1.0409	-0.00048795	468.77857385999937	27.887	1.0384	27.887	27.419	28.458	0					46	25	2	0	0	0	0.67475	1	9727	9727		37.028	2.8559	1	344470			46264	5143	30605	30728	46854	46854					0.07366661794185347
VIIAKVTAK	9	Unmodified	_VIIAKVTAK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.820556640625	2	471.820953	941.627353	0.19403	9.1548E-05	-0.81022	-0.00038228	-0.61618	-0.00029073	471.82054013998714	22.39	0.15145	22.39	22.295	22.446	0					5	3	2	0	0	0	0.095583	1	7277	7277		80.455	20.336	1	611690			46265	5112	30606	30729	46855	46855					0.15420398242031297
VIIAKVTAK	9	Unmodified	_VIIAKVTAK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.8206481933594	2	471.820953	941.627353	-0.59595	-0.00028118	0.22918	0.00010813	-0.36677	-0.00017305	471.82103217212403	22.379	0.10678	22.379	22.323	22.43	0					6	2	3	0	0	0	0.063823	1	7273	7273		90.37	21.583	1	405520			46266	5112	30606	30729	46856	46856					0.15420398242031297
VIIAKVTAK	9	Unmodified	_VIIAKVTAK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.8206481933594	2	471.820953	941.627353	0.58874	0.00027778	-1.0441	-0.00049265	-0.4554	-0.00021487	471.8203660474794	22.261	0.21349	22.261	22.153	22.367	0					8	4	3	0	0	0	0.0080613	1	7518	7518		145.16	54.786	1	2324800			46267	5112	30606	30729	46857	46857					0.15420398242031297
VIIAKVTAK	9	Unmodified	_VIIAKVTAK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.8206481933594	2	471.820953	941.627353	-2.399	-0.0011319	1.7494	0.0008254	-0.64965	-0.00030652	471.8217571719417	22.104	0.1372	22.104	22.02	22.157	0					8	3	3	0	0	0	0.54267	1	6538	6538		27.882	2.4321	1	260580			46268	5112	30606	30729	46858	46858					0.15420398242031297
VIIGSTHVL	9	Unmodified	_VIIGSTHVL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7865905761719	2	469.78711	937.559667	0.20186	9.483E-05	-0.70949	-0.00033331	-0.50763	-0.00023848	469.786655245651	37.183	0.26549	37.183	37.069	37.335	0					14	7	3	0	0	0	0.23186	1	14057	14057		57.811	11.859	1	207020			46269	2977	30607	30730	46859	46859					0.08838948311222339
VIKEKKFL	8	Unmodified	_VIKEKKFL_					0	0	0		ENST00000478384.5_1_X:133905349-133906188:-|nuORF	ENST00000478384.5_1_X:133905349-133906188:-|nuORF	ENST00000478384.5_1_X:133905349-133906188:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.828369140625	2	502.828778	1003.643	-2.0617	-0.0010367	1.9686	0.00098986	-0.093101	-4.6814E-05	502.82948541646	37.864	0.2014	37.864	37.775	37.976	0					13	9	2	0	0	0	0.70055	1	13558	13558		33.516	0	1	43647			46270	9933	30608	30731	46860	46860					0.14132684759090353
VIKGSILQK	9	Unmodified	_VIKGSILQK_					0	0	0		ENST00000480675.5_1_1:45390817-45407328:-|nuORF;nc|ENSG00000070785|Q9NR50-3|EIF2B3;nc|ENSG00000070785|Q9NR50-2|EIF2B3;ENSG00000070785|ENST00000360403|EIF2B3	ENST00000480675.5_1_1:45390817-45407328:-|nuORF	ENST00000480675.5_1_1:45390817-45407328:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	329.2182922363281	3	329.218332	984.633166	0.63844	0.00021019	-0.75791	-0.00024952	-0.11947	-3.9331E-05	329.2180809078754	23.01	0.094082	23.01	22.969	23.063	0					4	2	2	0	0	0	0.59802	1	7571	7571		29.17	15.033	1	189680			46271	1459	30609	30732	46861	46861					0.14023496753702602
VIKQNNSNYIE	11	Unmodified	_VIKQNNSNYIE_					0	0	0			REV__nc|ENSG00000171557|P02679-2|FGG	REV__nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	661.3408813476562	2	661.340966	1320.66738	-1.06	-0.00070102	1.3439	0.00088879	0.28393	0.00018777	661.3418850672058	34.611	0.133	34.611	34.515	34.648	0					5	3	2	0	0	0	0.68382	1	13361	13361		29.17	4.6509	1	50827	+		46272	16419	30610	30733	46862	46862					0.01987248384011764
VIKSREIK	8	Unmodified	_VIKSREIK_					0	0	0			REV__ENSG00000156194|ENST00000286719|PPEF2	REV__ENSG00000156194|ENST00000286719|PPEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.878173828125	3	324.878198	971.612765	0.28864	9.3774E-05	-0.4354	-0.00014145	-0.14675	-4.7676E-05	324.8779766545577	21.798	0.14067	21.798	21.737	21.878	0					9	4	3	0	0	0	0.66372	1	6054	6054		49.442	20.271	1	489980	+		46273	15621	30611	30734	46863	46863					0.12582326093900065
VIKSREIK	8	Unmodified	_VIKSREIK_					0	0	0			REV__ENSG00000156194|ENST00000286719|PPEF2	REV__ENSG00000156194|ENST00000286719|PPEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.87811279296875	3	324.878198	971.612765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.138	1	22.138	21.638	22.638	0								0	0	0	1.7419	1	7145	7145		68.787	8.856	1		+		46274	15621	30611	30734	46864	46864					0.12582326093900065
VIKSREIK	8	Unmodified	_VIKSREIK_					0	0	0			REV__ENSG00000156194|ENST00000286719|PPEF2	REV__ENSG00000156194|ENST00000286719|PPEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.8781433105469	3	324.878198	971.612765	-0.70277	-0.00022832	-0.5594	-0.00018174	-1.2622	-0.00041005	324.87815323609794	21.811	0.15406	21.811	21.766	21.92	0					8	4	3	0	0	0	0.76283	1	6327	6327		35.618	12.096	1	221410	+		46275	15621	30611	30734	46865	46865					0.12582326093900065
VIKVNSKQ	8	Unmodified	_VIKVNSKQ_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;DNPEP|p.Y391F|1|0.16|ENSG00000123992|chr2:219381402-219381402|T/A|missense_variant	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2844543457031	2	458.284734	914.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.862	1	14.862	14.362	15.362	0								0	0	0	1.7419	1	3793	3793		60.972	2.19	1				46276	3340	30612	30735	46866	46866					0.09422064168472843
VILAPSGPKG	10	Unmodified	_VILAPSGPKG_					0	0	0		COL16A1|p.T329I|1|0.2|ENSG00000084636|chr1:31694166-31694166|G/A|missense_variant	COL16A1|p.T329I|1|0.2|ENSG00000084636|chr1:31694166-31694166|G/A|missense_variant	COL16A1|p.T329I|1|0.2|ENSG00000084636|chr1:31694166-31694166|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.78607177734375	2	469.78711	937.559667	-0.6253	-0.00029376	-0.48591	-0.00022827	-1.1112	-0.00052203	469.78698087080426	37.175	0.15913	37.175	37.059	37.219	0					6	4	2	0	0	0	0.32758	1	14066	14066		64.207	8.7031	1	170380			46277	598	30613	30736	46867	46867					0.08838948311233707
VILDLNTAH	9	Unmodified	_VILDLNTAH_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.2795104980469	2	498.279649	994.544745	-0.70046	-0.00034903	-0.79626	-0.00039676	-1.4967	-0.00074578	498.28002425132723	23.187	0.16703	23.187	23.128	23.295	0					5	3	2	0	0	0	0.35021	1	7968	7968		45.972	0	1	141350			46278	6638	30614	30737	46868	46868					0.047254564432250845
VILGHVTAGML	11	Unmodified	_VILGHVTAGML_					0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	370.8841857910156	3	370.882843	1109.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.06	1	34.06	33.56	34.56	0								0	0	0	0.41424	1	12020	12020		33.922	1.1711	1		+		46279	17529	30615	30738	46869	46869					0.07627235530685539
VILIVRPPF	9	Unmodified	_VILIVRPPF_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1;SLC35G1|p.S209Kfs*34|1|0.05|ENSG00000176273|chr10:93901016-93901017|-/AAGCATAG|frameshift_variant	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.2329406738281	3	351.898822	1052.67464	1.4523	0.00051108	-1.4563	-0.00051248	-0.0039733	-1.3982E-06	351.89826467734605	38.111	0.56896	38.111	37.974	38.543	0					19	12	2	0	0	0	0.59802	1	14933	14933		21.96	0	1	145930			46280	6601	30616	30739	46870	46870					0.15040677513025003
VILKVKDK	8	Unmodified	_VILKVKDK_					0	0	0			REV__tr|U7T2R6|U7T2R6_FUSNURNA-bindingS4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00433PE=4SV=1	REV__tr|U7T2R6|U7T2R6_FUSNURNA-bindingS4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00433PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.821044921875	2	471.820953	941.627353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.079	1	22.079	21.579	22.579	0								0	0	0	1.7419	1	6188	6188		31.955	6.5047	1		+		46281	22116	30617	30740	46871	46871					0.15420398242042666
VILLPQPPK	9	Unmodified	_VILLPQPPK_					0	0	0		ENST00000499522.6_1_8:104178449-104258641:-|nuORF;AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|19|3|anti-sense;ENST00000602743.1_1_17:13801940-13972716:-|nuORF;ENST00000573538.5_2_16:67974380-67976796:-|nuORF;nc|ENSG00000050628|P43115-12|PTGER3	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.82861328125	2	502.828778	1003.643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.901	1	37.901	37.401	38.401	0								0	0	0	0.15865	1	12385	12385		57.811	0	1				46282	10142	30618	30741	46872	46872					0.14132684759078984
VILLPQPPK	9	Unmodified	_VILLPQPPK_					0	0	0		ENST00000499522.6_1_8:104178449-104258641:-|nuORF;AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|19|3|anti-sense;ENST00000602743.1_1_17:13801940-13972716:-|nuORF;ENST00000573538.5_2_16:67974380-67976796:-|nuORF;nc|ENSG00000050628|P43115-12|PTGER3	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.82830810546875	2	502.828778	1003.643	-0.067911	-3.4147E-05	-0.22739	-0.00011434	-0.2953	-0.00014849	502.8285226658061	38.435	0.49834	38.435	38.087	38.586	0					38	18	3	0	0	0	0.25109	1	14512	14512		55.504	5.4797	1	298000			46283	10142	30618	30741	46873	46873					0.14132684759078984
VILLPQPPK	9	Unmodified	_VILLPQPPK_					0	0	0		ENST00000499522.6_1_8:104178449-104258641:-|nuORF;AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|19|3|anti-sense;ENST00000602743.1_1_17:13801940-13972716:-|nuORF;ENST00000573538.5_2_16:67974380-67976796:-|nuORF;nc|ENSG00000050628|P43115-12|PTGER3	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.8284912109375	2	502.828778	1003.643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.138	1	38.138	37.638	38.638	0								0	0	0	0.16876	1	12867	12867		55.504	9.5523	1				46284	10142	30618	30741	46874	46874					0.14132684759078984
VILRTFAST	9	Unmodified	_VILRTFAST_					0	0	0			REV__TEK|p.P417Lfs*10|1|0.71|ENSG00000120156|chr9:27185547-27185547|C/-|frameshift_variant	REV__TEK|p.P417Lfs*10|1|0.71|ENSG00000120156|chr9:27185547-27185547|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	336.5343933105469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.256	1	51.256	50.756	51.756	0								0	0	0	0.39567	1	16676	16676		8.6937	0	1		+		46285	14270	30619	30742	46875	46875					0.0781033333993264
VILSSVIQP	9	Unmodified	_VILSSVIQP_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.29425048828125	2	478.294768	954.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.351	1	37.351	36.851	37.851	0								0	0	0	0.1633	1	14596	14596		56.721	0	1				46286	10100	30620	30743	46876	46876					0.09587815108432096
VILVSHTPQ	9	Unmodified	_VILVSHTPQ_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ENST00000543926.6_1_18:74647944-74680292:+|nuORF;ZNF236|p.E1775Sfs*19|1|0.31|ENSG00000130856|chr18:76960761-76960761|G/-|frameshift_variant	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	331.8623352050781	3	331.862437	992.565481	-0.0049014	-1.6266E-06	-0.24604	-8.1652E-05	-0.25094	-8.3278E-05	331.86235578818133	22.097	0.11817	22.097	22.037	22.156	0					6	2	3	0	0	0	0.61124	1	7312	7312		20.947	5.3051	1	538710			46287	3680	30621	30744	46877	46877					0.06890046822900331
VILYFEPS	8	Unmodified	_VILYFEPS_					0	0	0		GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant;GPR158|p.K1143Rfs*23|1|0.32|ENSG00000151025|chr10:25599048-25599048|A/-|frameshift_variant;ENSG00000151025|ENST00000376351|GPR158;ENSG00000164961|ENST00000318410|WASHC5	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant;ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.25799560546875	2	484.260394	966.506234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.526	1	27.526	27.026	28.026	0								0	0	0	1.7419	1	8494	8494		33.516	1.9858	1				46288	5749;4943	30622	30745	46878	46878					0.021641508087100192
VIMNSLITK	9	Unmodified	_VIMNSLITK_					0	0	0		KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant;ENSG00000122203|ENST00000298569|KIAA1191;nc|ENSG00000122203|Q96A73-2|KIAA1191	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	KIAA1191|p.K274Qfs*18|1|0.61|ENSG00000122203|chr5:176347698-176347699|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.80181884765625	2	509.801903	1017.58925	1.1796	0.00060137	-1.0064	-0.00051305	0.17324	8.8319E-05	509.8012872781034	35.325	0.25288	35.325	35.25	35.503	0					12	7	2	0	0	0	0.18505	1	13687	13687		63.426	4.6445	1	756270			46289	3255	30623	30746	46879	46879					0.08116144265056846
VIMRANEA	8	Unmodified	_VIMRANEA_					0	0	0			REV__CON__A2AB72	REV__CON__A2AB72	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.23760986328125	2	452.23947	902.464386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.827	1	21.827	21.327	22.327	0								0	0	0	1.7419	1	6996	6996		33.516	0	1		+	+	46290	12572	30624	30747	46880	46880					0.009252718485299738
VIMRPGNKY	9	Unmodified	_VIMRPGNKY_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.2953491210938	2	539.297319	1076.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.05	1	38.05	37.55	38.55	0								0	0	0	0.16876	1	12843	12843		55.504	3.205	1				46291	8070	30625	30748	46881	46881					0.04485795699406481
VIMTSGPLK	9	Unmodified	_VIMTSGPLK_					0	0	0		ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant;ENSG00000175727|ENST00000319080|MLXIP;ENST00000535996.1_12:122619796-122620072:+|nuORF	ENST00000541750.1_12:122618368-122620257:+|nuORF	ENST00000541750.1_12:122618368-122620257:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2751770019531	2	473.275521	944.536489	0.2467	0.00011676	-0.62879	-0.00029759	-0.38209	-0.00018084	473.27491766239075	30.131	0.245	30.131	30.011	30.256	0					13	6	3	0	0	0	0.42902	1	10828	10828		39.253	0.44669	1	257530			46292	6572	30626	30749	46882	46882					0.062001862022498244
VIMVTIDYLV	10	Unmodified	_VIMVTIDYLV_					0	0	0		nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;SLC4A7|p.L1003Wfs*11|1|0.39|ENSG00000033867|chr3:27394600-27394600|A/-|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	389.22198486328125	3	389.222754	1164.64643	-0.15203	-5.9174E-05	-2.0624	-0.00080272	-2.2144	-0.0008619	389.2218744557402	17.536	0.10775	17.536	17.469	17.577	0					6	3	2	0	0	0	0.6796	1	4402	4402		24.519	0.99649	1	100760			46293	1159	30627	30750	46883	46883					0.07069566750760714
VINGLLGNIV	10	Unmodified	_VINGLLGNIV_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1;REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.3135070800781	2	506.313492	1010.61243	-0.71023	-0.0003596	1.0504	0.00053182	0.34015	0.00017222	506.3140039822428	37.772	0.18144	37.772	37.683	37.865	0					15	10	2	0	0	0	0.60281	1	12747	12747		29.15	1.2673	1	82428			46294	11763;21216	30628	30751	46884	46884					0.10754906374040729
VINILADALGP	11	Unmodified	_VINILADALGP_					0	0	0		ENST00000461320.5_1_1:150239547-150241394:-|nuORF;nc|ENSG00000117362|Q96BI3-3|APH1A;nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	ENST00000461320.5_1_1:150239547-150241394:-|nuORF	ENST00000461320.5_1_1:150239547-150241394:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	365.885009765625	3	365.88513	1094.63356	0.75057	0.00027462	-1.0726	-0.00039244	-0.322	-0.00011782	365.88470189538515	19.364	0.18374	19.364	19.308	19.492	0					7	4	2	0	0	0	0.63135	1	5842	5842		23.378	0	1	540630			46295	9731	30629	30752	46885	46885					0.09002871682901059
VINLRLSET	9	Unmodified	_VINLRLSET_					0	0	0		TRMT6|p.G419W|1|0.11|ENSG00000089195|chr20:5941100-5941100|C/A|missense_variant;ENST00000466974.5_1_20:5919183-5921791:-|nuORF;nc|ENSG00000089195|Q9UJA5-4|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	TRMT6|p.G419W|1|0.11|ENSG00000089195|chr20:5941100-5941100|C/A|missense_variant	TRMT6|p.G419W|1|0.11|ENSG00000089195|chr20:5941100-5941100|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.306396484375	2	522.806031	1043.59751	-0.045299	-2.3683E-05	-0.19119	-9.9955E-05	-0.23649	-0.00012364	522.8063062935701	39.453	0.35484	39.453	39.349	39.703	0					14	12	2	0	0	0	0.57706	1	15558	15558		24.203	0	1	180380			46296	1807	30630	30753	46886	46886					0.07745414506052839
VIPLPQWK	8	Unmodified	_VIPLPQWK_					0	0	0		ENST00000565945.1_1_16:28602037-28603024:+|nuORF;ENSG00000176476|ENST00000317058|SGF29	ENST00000565945.1_1_16:28602037-28603024:+|nuORF	ENST00000565945.1_1_16:28602037-28603024:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	327.53680419921875	3	327.535772	979.585488	3.0009	0.0009829	-0.91614	-0.00030007	2.0847	0.00068283	327.5355382076542	22.614	0.86478	22.614	22.353	23.218	0					50	17	5	0	0	0	0.72892	1	7512	7512		40.573	40.573	1	8881300			46297	6610	30631	30754	46887	46887					0.09487842553505743
VIPQPKPFQ	9	Unmodified	_VIPQPKPFQ_					0	0	0		ENST00000318493.10_1_7:116397827-116398583:+|nuORF	ENST00000318493.10_1_7:116397827-116398583:+|nuORF	ENST00000318493.10_1_7:116397827-116398583:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.3092651367188	2	527.30821	1052.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.957	1	17.957	17.457	18.457	0								0	0	0	0.35507	1	5426	5426		24.203	4.206	1				46298	8593	30632	30755	46888	46888					0.07766923719600527
VIPSSPKEV	9	Unmodified	_VIPSSPKEV_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.27667236328125	2	478.276575	954.538597	0.015858	7.5845E-06	-0.47411	-0.00022676	-0.45826	-0.00021917	478.27635545300865	31.94	0.28604	31.94	31.794	32.08	0					17	11	2	0	0	0	0.45358	1	10272	10272		37.159	5.2042	1	99173			46299	7376	30633	30756	46889	46889					0.0595093821170849
VIPTAPSR	8	Unmodified	_VIPTAPSR_					0	0	0			REV__nc|ENSG00000136059|O15195-2|VILL	REV__nc|ENSG00000136059|O15195-2|VILL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.7507629394531	2	420.750527	839.486502	0.42293	0.00017795	-1.844	-0.00077587	-1.4211	-0.00059792	420.7504407469174	21.908	0.45716	21.908	21.616	22.073	0					22	13	2	0	0	0	0.65276	1	6043	6043		40.573	5.3719	1	132380	+		46300	14844	30634	30757	46890	46890					0.06033819588606093
VIPTNVPELT	10	Unmodified	_VIPTNVPELT_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1;MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.8113403320312	2	541.808239	1081.60193	0.1484	8.0403E-05	3.3356	0.0018072	3.484	0.0018876	541.81025162051	29.418	0.13972	29.418	29.377	29.516	0					9	5	2	0	0	0	0.50881	1	9588	9588		44.377	11.565	1	75579			46301	3880	30635	30758	46891	46891					0.06438878928929626
VIPVKATT	8	Unmodified	_VIPVKATT_					0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.76190185546875	2	414.763104	827.511654	-1.3151	-0.00054544	-1.1386	-0.00047225	-2.4537	-0.0010177	414.7624925898691	50.647	0.26453	50.647	50.537	50.801	0					23	16	2	0	0	0	0.72892	1	16544	16544		29.842	3.0454	1	147270	+		46302	14759	30636	30759	46892	46892					0.09099874391165486
VIQALQDKLQ	10	Unmodified	_VIQALQDKLQ_					0	0	0		nc|ENSG00000146530|Q8N2E2-3|VWDE;ENSG00000146530|ENST00000275358|VWDE	nc|ENSG00000146530|Q8N2E2-3|VWDE	nc|ENSG00000146530|Q8N2E2-3|VWDE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.8971862792969	3	385.895917	1154.66592	3.2148	0.0012406	0.063182	2.4381E-05	3.278	0.001265	385.89592302266755	32.699	0.55722	32.699	32.489	33.046	0					33	11	4	0	0	0	0.65895	1	12362	12362		27.047	0	1	1527000			46303	4739	30637	30760	46893	46893					0.09477659085882806
VIQGKSVGK	9	Unmodified	_VIQGKSVGK_					0	0	0		ENST00000507834.3_1_4:86167663-86168062:+|nuORF	ENST00000507834.3_1_4:86167663-86168062:+|nuORF	ENST00000507834.3_1_4:86167663-86168062:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.2851257324219	2	458.284734	914.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.673	1	14.673	14.173	15.173	0								0	0	0	0.11736	1	3151	3151		67.494	7.1997	1				46304	10203	30638	30761	46894	46894					0.09422064168472843
VIQGQAVRK	9	Unmodified	_VIQGQAVRK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.8089599609375	2	499.808908	997.603263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.584	1	15.584	15.084	16.084	0								0	0	0	0.15687	1	3417	3417		60.972	15.02	1				46305	1941	30639	30762	46895	46895					0.10436557808361613
VIQKLAPF	8	Unmodified	_VIQKLAPF_					0	0	0		ENST00000464083.5_1_6:36973566-36981682:+|nuORF;FGD2|p.K560Qfs*14|1|0.4|ENSG00000146192|chr6:37027495-37027496|-/G|frameshift_variant;ENSG00000146192|ENST00000274963|FGD2;ENST00000470273.5_1_6:36981367-36981682:+|nuORF;ENST00000373535.6_1_6:36981409-36988336:+|nuORF;ENST00000494343.5_1_6:36981367-36995936:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	ENST00000464083.5_1_6:36973566-36981682:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.28399658203125	2	458.286746	914.558939	0.058045	2.6601E-05	-4.4094	-0.0020208	-4.3514	-0.0019942	458.28472680183154	14.605	0.078175	14.605	14.558	14.636	0					5	3	2	0	0	0	0.6282	1	3033	3033		44.531	0.41427	1	54586			46306	4715	30640	30763	46896	46896					0.09824153662179924
VIQQIAGRL	9	Unmodified	_VIQQIAGRL_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.31134033203125	2	499.311284	996.608014	-1.06	-0.00052929	0.74601	0.00037249	-0.31403	-0.0001568	499.3119347864063	18.389	0.082886	18.389	18.308	18.391	0					5	3	2	0	0	0	0.46194	1	4788	4788		37.159	0	1	94262	+		46307	14666	30642	30764	46897	46897					0.10957441951120472
VIQTHTHT	8	Unmodified	_VIQTHTHT_					0	0	0		ENST00000416928.6_1_2:177041157-177041208:-|nuORF	ENST00000416928.6_1_2:177041157-177041208:-|nuORF	ENST00000416928.6_1_2:177041157-177041208:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7485656738281	2	468.748516	935.482479	-1.1323	-0.00053076	0.39879	0.00018693	-0.73349	-0.00034382	468.7486473074799	27.547	0.17817	27.547	27.442	27.62	0					10	6	2	0	0	0	0.65276	1	8774	8774		40.573	4.1259	1	77340			46308	9369	30643	30765	46898	46898					0.01215730094884293
VISLEGKPL	9	Unmodified	_VISLEGKPL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.7949523925781	2	478.294768	954.574983	0.42923	0.0002053	-1.3642	-0.00065248	-0.93494	-0.00044718	478.2944607057123	37.464	0.25416	37.464	37.358	37.612	0					13	7	2	0	0	0	0.22377	1	14202	14202		58.782	14.665	1	87666			46309	6381	30644	30766	46899	46899					0.09587815108432096
VISMHSRTT	9	Unmodified	_VISMHSRTT_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2696533203125	2	516.268758	1030.52296	0.036005	1.8588E-05	0.98691	0.00050951	1.0229	0.0005281	516.2692951356338	39.523	0.43589	39.523	39.308	39.744	0					28	17	2	0	0	0	0.53083	1	15079	15079		29.15	3.6994	1	118920			46310	11769	30645	30767	46900	46900					0.008923284230149875
VISPHLKEY	9	Unmodified	_VISPHLKEY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.3028564453125	2	543.303124	1084.5917	0.34081	0.00018516	-2.5027	-0.0013597	-2.1618	-0.0011745	543.302677673067	36.075	0.27752	36.075	35.969	36.247	0					21	7	4	0	0	0	0.07136	1	13573	13573		87.696	8.2454	1	365730			46311	4539	30646	30768	46901	46901					0.05278315994382865
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.8133544921875	2	486.813659	971.612765	0.004001	1.9478E-06	-0.52876	-0.00025741	-0.52476	-0.00025546	486.81333199246313	21.798	0.17144	21.798	21.706	21.878	0					11	5	3	0	0	0	0.082776	1	6049	6049		83.647	28.143	1	609610			46312	10428	30647	30769	46902	46902					0.12582326093888696
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.81353759765625	2	486.813659	971.612765	-0.31773	-0.00015467	-0.099512	-4.8444E-05	-0.41724	-0.00020312	486.8136005439046	22.139	0.10342	22.139	22.061	22.165	0					8	2	4	0	0	0	0.061298	1	7144	7144		91.265	36.489	1	1963200			46313	10428	30647	30769	46903	46903					0.12582326093888696
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.81317138671875	2	486.813659	971.612765	-1.2429	-0.00060505	0.4868	0.00023698	-0.75607	-0.00036807	486.81386563673357	21.816	0.11485	21.816	21.746	21.86	0					9	3	3	0	0	0	0.063171	1	6320	6320		90.601	31.819	1	525210			46314	10428	30647	30769	46904	46904					0.12582326093888696
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.8135070800781	2	486.813659	971.612765	0.63734	0.00031027	-2.0064	-0.00097674	-1.369	-0.00066647	486.81232708111617	22.014	0.26319	22.014	21.907	22.17	0					9	5	3	0	0	0	0.085655	1	7398	7398		82.75	20.643	1	4334100			46315	10428	30647	30769	46905	46905					0.12582326093888696
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.8780212402344	3	324.878198	971.612765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.022	1	22.022	21.522	22.522	0								0	0	0	0.24544	1	7392	7392		51.528	15.21	1				46316	10428	30647	30769	46906	46906					0.12582326093888696
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.8133239746094	2	486.813659	971.612765	-0.23592	-0.00011485	-0.061242	-2.9814E-05	-0.29717	-0.00014466	486.81356959971504	21.862	0.15059	21.862	21.806	21.957	0					5	3	2	0	0	0	0.13726	1	6425	6425		70.816	30.038	1	139700			46317	10428	30647	30769	46907	46907					0.12582326093888696
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.81341552734375	2	486.813659	971.612765	-2.9124	-0.0014178	1.188	0.00057831	-1.7244	-0.00083946	486.81428789035215	21.896	0.19612	21.896	21.792	21.988	0					11	4	3	0	0	0	0.085655	1	6418	6418		82.75	8.4954	1	595150			46318	10428	30647	30769	46908	46908					0.12582326093888696
VISRAISVK	9	Unmodified	_VISRAISVK_					0	0	0		ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	ENST00000530759.1_1_11:76155338-76155506:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.8135681152344	2	486.813659	971.612765	2.5375	0.0012353	-3.0469	-0.0014833	-0.50941	-0.00024799	486.8121490259407	22.012	0.1686	22.012	21.903	22.071	0					9	3	3	0	0	0	0.061298	1	7267	7267		91.265	22.478	1	4061400			46319	10428	30647	30769	46909	46909					0.12582326093888696
VITPFIALII	10	Unmodified	_VITPFIALII_					0	0	0		tr|U7SL09|U7SL09_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02025PE=4SV=1	tr|U7SL09|U7SL09_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02025PE=4SV=1	tr|U7SL09|U7SL09_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02025PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.3587646484375	2	550.359911	1098.70527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.939	1	25.939	25.439	26.439	0								0	0	0	0.4201	1	7825	7825		24.203	1.1603	1				46320	22635	30648	30770	46910	46910					0.1598641110740573
VITTLSTLLI	10	Unmodified	_VITTLSTLLI_					0	0	0			REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.56573486328125	3	358.565397	1072.67436	1.2973	0.00046517	-0.26342	-9.4454E-05	1.0339	0.00037072	358.5653104327996	30.97	0.21114	30.97	30.865	31.076	0					8	4	2	0	0	0	0.65051	1	11540	11540		28.081	28.081	1	741260	+		46321	21686	30649	30771	46911	46911					0.14093213002524863
VITTPLISAM	10	Unmodified	_VITTPLISAM_					0	0	0			REV__ZFPM2|p.A243T|1|0.31|ENSG00000169946|chr8:105788912-105788912|G/A|missense_variant	REV__ZFPM2|p.A243T|1|0.31|ENSG00000169946|chr8:105788912-105788912|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3047485351562	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.623	1	50.623	50.123	51.123	0								0	0	0	0.40862	1	15728	15728		27.882	3.3631	1		+		46322	22307	30650	30772	46912	46912					0.06840724545213561
VIVDSTVGK	9	Unmodified	_VIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7673645019531	2	459.26875	916.522947	0.69482	0.00031911	-2.8707	-0.0013184	-2.1759	-0.00099933	459.26815277395133	24.031	0.26345	24.031	23.857	24.12	0					20	8	4	0	0	0	0.30841	1	7014	7014		49.536	10.73	1	249740			46323	1085	30651	30773	46913	46913					0.06134651694662807
VIVDSTVGK	9	Unmodified	_VIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.2682800292969	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.051	1	24.051	23.551	24.551	0								0	0	0	0.3304	1	7043	7043		29.15	4.9468	1				46324	1085	30651	30773	46914	46914					0.06134651694662807
VIVDSTVGK	9	Unmodified	_VIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7669372558594	2	459.26875	916.522947	0.15917	7.31E-05	-2.0578	-0.00094506	-1.8986	-0.00087196	459.2683099079906	24.332	0.33371	24.332	24.144	24.478	0					26	7	5	0	0	0	0.13726	1	8163	8163		70.816	26.439	1	5327100			46325	1085	30651	30773	46915	46915					0.06134651694662807
VIVDSTVGK	9	Unmodified	_VIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2682800292969	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.288	1	24.288	23.788	24.788	0								0	0	0	0.045272	1	8483	8483		88.177	36.841	1				46326	1085	30651	30773	46916	46916					0.06134651694662807
VIVDSTVGK	9	Unmodified	_VIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2685241699219	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.121	1	24.121	23.621	24.621	0								0	0	0	0.14881	1	7472	7472		60.118	17.722	1				46327	1085	30651	30773	46917	46917					0.06134651694662807
VIVDSTVGK	9	Unmodified	_VIVDSTVGK_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2684631347656	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.259	1	24.259	23.759	24.759	0								0	0	0	0.069826	1	8342	8342		80.455	29.119	1				46328	1085	30651	30773	46918	46918					0.06134651694662807
VIVETASLK	9	Unmodified	_VIVETASLK_					0	0	0		ENST00000013070.10_1_14:93676257-93678393:+|nuORF	ENST00000013070.10_1_14:93676257-93678393:+|nuORF	ENST00000013070.10_1_14:93676257-93678393:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2920837402344	2	480.292225	958.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.526	1	29.526	29.026	30.026	0								0	0	0	0.17378	1	10554	10554		54.776	5.3348	1				46329	8139	30652	30774	46919	46919					0.0889551124580521
VIVSESDPA	9	Unmodified	_VIVSESDPA_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.73516845703125	2	458.73474	915.454927	0.79634	0.00036531	-1.1468	-0.00052608	-0.35046	-0.00016077	458.7349669591392	24.472	0.5709	24.472	24.265	24.836	0					26	13	3	0	0	0	0.41354	1	8250	8250		40.573	1.5511	1	322330	+		46330	17332	30653	30775	46920	46920					-0.006182179560028089
VIVVVVFIKG	10	Unmodified	_VIVVVVFIKG_					0	0	0			REV__ENST00000537717.1_1_12:15370321-15370423:-|nuORF	REV__ENST00000537717.1_1_12:15370321-15370423:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.8604736328125	2	536.860078	1071.7056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.608	1	40.608	40.108	41.108	0								0	0	0	0.4201	1	15484	15484		23.042	4.7181	1		+		46331	20113	30654	30776	46921	46921					0.1726183082728312
VIWGTGQLFQ	10	Unmodified	_VIWGTGQLFQ_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.5402526855469	3	383.541475	1147.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.856	1	21.856	21.356	22.356	0								0	0	0	0.40063	1	6411	6411		30.318	0	1				46332	1145	30655	30777	46922	46922					0.034697183686375865
VIWKDHHLHI	10	Unmodified	_VIWKDHHLHI_					0	0	0		OR5H1|p.P53H|1|0.43|ENSG00000231192|chr3:98132855-98132855|C/A|missense_variant	OR5H1|p.P53H|1|0.43|ENSG00000231192|chr3:98132855-98132855|C/A|missense_variant	OR5H1|p.P53H|1|0.43|ENSG00000231192|chr3:98132855-98132855|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	649.3646850585938	2	649.361839	1296.70913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.35	1	39.35	38.85	39.85	0								0	0	0	0.4201	1	13230	13230		6.7355	0	1				46333	11882	30656	30778	46923	46923					0.07263893653839659
VIYACWNKN	9	Unmodified	_VIYACWNKN_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.7752685546875	2	555.773677	1109.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.09	1	17.09	16.59	17.59	0								0	0	0	0.25856	1	4215	4215		42.474	5.446	1		+		46334	14647	30657	30779	46924	46924					-0.017584835716206726
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	575.3535766601562	2	575.353148	1148.69174	0.99122	0.0005703	-0.7372	-0.00042415	0.25402	0.00014615	575.3527238025491	19.058	0.34538	19.058	18.993	19.338	0					25	10	4	0	0	0	0.015496	1	4851	4851		129.42	55.166	1	1805800			46335	3372	30658	30780	46925	46925					0.12334553328196307
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	383.9044189453125	3	383.904524	1148.69174	0.84183	0.00032318	-1.2874	-0.00049425	-0.4456	-0.00017107	383.90414448064337	19.364	1.1403	19.364	19.262	20.402	0					59	25	5	0	0	0	0.14603	1	5839	5839		75.043	23.851	1	20342000			46336	3372	30658	30780	46926	46926					0.12334553328196307
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.3534545898438	2	575.353148	1148.69174	-0.097656	-5.6186E-05	0.2556	0.00014706	0.15794	9.0871E-05	575.3532997592833	19.397	0.81639	19.397	19.294	20.11	0					49	18	5	0	0	0	0.012936	1	5832	5832		134.77	61.886	1	15706000			46337	3372	30658	30780	46927	46927					0.12334553328196307
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.3533935546875	2	575.353148	1148.69174	0.05298	3.0482E-05	0.99094	0.00057014	1.0439	0.00060062	575.3536993955423	19.089	0.32934	19.089	18.993	19.322	0					25	10	4	0	0	0	0.18416	1	5087	5087		63.534	17.562	1	1937900			46338	3372	30658	30780	46928	46928					0.12334553328196307
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.3532104492188	2	575.353148	1148.69174	1.8722	0.0010772	-1.1889	-0.00068403	0.68334	0.00039316	575.3522831469969	19.272	0.86459	19.272	19.164	20.028	0					48	17	5	0	0	0	0.0076184	1	6073	6073		146.79	61.625	1	9822000			46339	3372	30658	30780	46929	46929					0.12334553328196307
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	575.3536987304688	2	575.353148	1148.69174	-0.24713	-0.00014219	0.58494	0.00033655	0.33781	0.00019436	575.3534459018348	19.305	0.21504	19.305	19.197	19.412	0					8	4	3	0	0	0	0.04067	1	6068	6068		98.582	38.464	1	819950			46340	3372	30658	30780	46930	46930					0.12334553328196307
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.9043273925781	3	383.904524	1148.69174	0.2671	0.00010254	-0.58078	-0.00022296	-0.31368	-0.00012042	383.90428349386826	19.172	0.22971	19.172	19.077	19.306	0					16	5	4	0	0	0	0.24095	1	5143	5143		63.534	13.5	1	839070			46341	3372	30658	30780	46931	46931					0.12334553328196307
VIYEKTIRK	9	Unmodified	_VIYEKTIRK_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	384.23858642578125	3	383.904524	1148.69174	-0.14171	-5.4403E-05	-0.085281	-3.274E-05	-0.22699	-8.7143E-05	383.9045065329314	19.155	0.22823	19.155	19.061	19.289	0					12	5	3	0	0	0	0.48389	1	5137	5137		41.427	13.345	1	3740500			46342	3372	30658	30780	46932	46932					0.12334553328196307
VIYKNTHIK	9	Unmodified	_VIYKNTHIK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.331298828125	2	558.332216	1114.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.349	1	18.349	17.849	18.849	0								0	0	0	0.069826	1	5617	5617		80.455	41.648	1				46343	4265	30659	30781	46933	46933					0.0971399763966474
VIYKNTHIK	9	Unmodified	_VIYKNTHIK_					0	0	0		PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.3333129882812	2	558.332216	1114.64988	1.3137	0.00073351	3.6816	0.0020556	4.9953	0.0027891	558.3341082521246	18.329	0.21774	18.329	18.271	18.489	0					7	4	2	0	0	0	0.10915	1	5478	5478		77.318	3.0625	1	509600			46344	4265	30659	30781	46934	46934					0.0971399763966474
VIYLIRDT	8	Unmodified	_VIYLIRDT_					0	0	0			REV__ENSG00000263201|ENST00000574912|DPEP2NB	REV__ENSG00000263201|ENST00000574912|DPEP2NB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.293701171875	2	496.792392	991.570232	-1.1746	-0.00058353	1.2035	0.00059789	0.028918	1.4366E-05	496.79288372537053	37.943	0.20257	37.943	37.877	38.08	0					17	11	2	0	0	0	0.70055	1	12801	12801		33.516	1.5607	1	72494	+		46345	17783	30660	30782	46935	46935					0.07410930965670559
VIYLRDNE	8	Unmodified	_VIYLRDNE_					0	0	0			REV__ENST00000574215.5_1_3:27203940-27332977:-|nuORF	REV__ENST00000574215.5_1_3:27203940-27332977:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.271240234375	2	511.269281	1020.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.932	1	15.932	15.432	16.432	0								0	0	0	1.7419	1	4454	4454		28.254	1.4582	1		+		46346	15884	30661	30783	46936	46936					0.014568660635632114
VIYMVYIK	8	Unmodified	_VIYMVYIK_					0	0	0			REV__RAG2|p.S111Y|1|0.31|ENSG00000175097|chr11:36593837-36593837|G/T|missense_variant	REV__RAG2|p.S111Y|1|0.31|ENSG00000175097|chr11:36593837-36593837|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.7959594726562	2	514.796089	1027.57763	0.12191	6.2758E-05	-0.13581	-6.9917E-05	-0.013907	-7.1593E-06	514.7958760977145	14.18	0.14828	14.18	14.134	14.282	0					9	6	2	0	0	0	0.79462	1	2904	2904		16.705	16.705	1	256120	+		46347	21442	30662	30784	46937	46937					0.06493947241733622
VIYNEQMASK	10	Unmodified	_VIYNEQMASK_					0	0	0		ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.795166015625	2	591.794806	1181.57506	-0.52625	-0.00031143	0.81915	0.00048477	0.2929	0.00017334	591.7953484886704	25.698	0.20894	25.698	25.562	25.771	0					12	6	3	0	0	0	0.010919	1	8030	8030		139.38	84.66	1	343910			46348	7080	30663	30785	46938	46938					-0.008465529539080308
VIYNEQMASK	10	Unmodified	_VIYNEQMASK_					0	0	0		ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.7951049804688	2	591.794806	1181.57506	1.5159	0.00089711	-1.34	-0.00079302	0.1759	0.0001041	591.7940333083551	25.926	0.34595	25.926	25.738	26.084	0					14	5	4	0	0	0	0.0043426	1	9229	9229		167.93	105.83	1	2069300			46349	7080	30663	30785	46939	46939					-0.008465529539080308
VIYNEQMASK	10	Unmodified	_VIYNEQMASK_					0	0	0		ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	591.7947387695312	2	591.794806	1181.57506	0.51536	0.00030498	-0.17285	-0.00010229	0.34251	0.0002027	591.7945003133644	25.781	0.1022	25.781	25.687	25.789	0					4	2	2	0	0	0	0.0068379	1	8240	8240		159.34	78.881	1	293860			46350	7080	30663	30785	46940	46940					-0.008465529539080308
VIYNEQMASK	10	Unmodified	_VIYNEQMASK_					0	0	0		ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	591.7948608398438	2	591.794806	1181.57506	1.3867	0.00082065	-1.3901	-0.00082264	-0.0033716	-1.9953E-06	591.7941163036437	25.89	0.35001	25.89	25.701	26.051	0					16	5	4	0	0	0	8.3919E-06	1	9089	9089		192.64	121.82	1	1824600			46351	7080	30663	30785	46941	46941					-0.008465529539080308
VIYPARISL	9	Unmodified	_VIYPARISL_					0	0	0		nc|ENSG00000132002|P25685-2|DNAJB1;DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.3162231445312	2	516.316035	1030.61752	1.2405	0.00064048	0.22979	0.00011865	1.4703	0.00075912	516.3162455053242	42.364	0.15965	42.364	42.283	42.442	0					14	8	2	0	0	0	0.48389	1	16050	16050		34.173	8.7224	1	90663			46352	824	30664	30786	46942	46942					0.10343210236646883
VIYPARISL	9	Unmodified	_VIYPARISL_					0	0	0		nc|ENSG00000132002|P25685-2|DNAJB1;DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.3164672851562	2	516.316035	1030.61752	1.5264	0.0007881	-0.97362	-0.00050269	0.55277	0.0002854	516.315539685518	42.299	0.28247	42.299	42.17	42.453	0					18	7	3	0	0	0	0.30951	1	16849	16849		49.442	49.442	1	787960			46353	824	30664	30786	46943	46943					0.10343210236646883
VIYSTPLPEK	10	Unmodified	_VIYSTPLPEK_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant;KLF3|p.Y107Ifs*72|1|0.36|ENSG00000109787|chr4:38688838-38688839|-/A|frameshift_variant;nc|ENSG00000109787|P57682-2|KLF3;KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant;KLF3|p.P226Rfs*52|3|0.26|ENSG00000109787|chr4:38689855-38689855|C/-|frameshift_variant	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8242797851562	2	573.823889	1145.63323	-0.11912	-6.8353E-05	0.356	0.00020428	0.23688	0.00013593	573.8240873215768	32.433	0.29192	32.433	32.291	32.583	0					13	7	2	0	0	0	0.11308	1	11928	11928		93.143	27.678	1	94936			46354	2591	30665	30787	46944	46944					0.06623451963059779
VIYTLAAALVL	11	Unmodified	_VIYTLAAALVL_					0	0	0			REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	382.908447265625	3	382.909275	1145.706	-1.1494	-0.00044011	-1.2171	-0.00046602	-2.3665	-0.00090614	382.90875793311324	22.599	0.22457	22.599	22.505	22.729	0					14	7	3	0	0	0	0.78918	1	6671	6671		20.837	9.7404	1	232890	+		46355	22039	30666	30788	46945	46945					0.13897205756461517
VKAITYSAMQ	10	Unmodified	_VKAITYSAMQ_					0	0	0		ENSG00000176261|ENST00000468695|ZBTB8OS	ENSG00000176261|ENST00000468695|ZBTB8OS	ENSG00000176261|ENST00000468695|ZBTB8OS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.2931518554688	2	556.294442	1110.57433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.723	1	36.723	36.223	37.223	0								0	0	0	0.35072	1	12435	12435		42.864	0	1				46356	6600	30667	30789	46946	46946					0.023466523970455455
VKCLMRKEY	9	Unmodified	_VKCLMRKEY_					0	0	0		ZNF569|p.H164Y|1|0.2|ENSG00000196437|chr19:37414168-37414168|G/A|missense_variant	ZNF569|p.H164Y|1|0.2|ENSG00000196437|chr19:37414168-37414168|G/A|missense_variant	ZNF569|p.H164Y|1|0.2|ENSG00000196437|chr19:37414168-37414168|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.3128662109375	2	585.312112	1168.60967	-1.7282	-0.0010115	1.2643	0.00074	-0.46387	-0.00027151	585.3130595743584	34.042	0.61799	34.042	33.702	34.32	0					35	18	2	0	0	0	0.61124	1	11897	11897		18.324	0.062328	1	154730			46357	23164	30668	30790	46947	46947					0.032109916532135685
VKCSSLIDE	9	Unmodified	_VKCSSLIDE_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2495422363281	2	497.2497	992.484847	-2.3008	-0.0011441	1.543	0.00076725	-0.75779	-0.00037681	497.2505227337374	11.622	0.082481	11.622	11.581	11.663	0					7	3	3	0	0	0	0.60749	1	2215	2215		20.947	0.95016	1	289360	+		46358	16035	30669	30791	46948	46948					-0.01169602282300275
VKDVIAQK	8	Unmodified	_VKDVIAQK_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1;REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.77947998046875	2	450.779285	899.544017	-2.6062	-0.0011748	2.1519	0.00097005	-0.45424	-0.00020476	450.78041593941	16.661	0.24816	16.661	16.463	16.711	0					10	7	2	0	0	0	0.53424	1	3993	3993		56.721	0	1	89846	+		46359	16856;15688	30670	30792	46949	46949					0.09022661794188025
VKEGLISQY	9	Unmodified	_VKEGLISQY_					0	0	0			REV__CEP95|p.Q357Rfs*7|1|0.07|ENSG00000258890|chr17:64526113-64526113|C/-|frameshift_variant	REV__CEP95|p.Q357Rfs*7|1|0.07|ENSG00000258890|chr17:64526113-64526113|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7881469726562	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.92	1	31.92	31.42	32.42	0								0	0	0	0.17378	1	11045	11045		54.776	1.8396	1		+		46360	12435	30671	30793	46950	46950					0.043703232404368464
VKEGRWKG	8	Unmodified	_VKEGRWKG_					0	0	0			REV__ENSG00000107779|ENST00000372037|BMPR1A;REV__ENSG00000138696|ENST00000515059|BMPR1B	REV__ENSG00000107779|ENST00000372037|BMPR1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2925720214844	2	480.274701	958.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.349	1	36.349	35.849	36.849	0								0	0	0	1.7419	1	14149	14149		37.159	0	1		+		46361	13861;14996	30672	30794	46951	46951					0.05392313228514922
VKFCLKYF	8	Carbamidomethyl (C)	_VKFC(Carbamidomethyl (C))LKYF_	VKFC(1)LKYF		VKFC(50)LKYF		0	1	0			REV__ENST00000258180.7_1_16:85127640-85127736:+|nuORF	REV__ENST00000258180.7_1_16:85127640-85127736:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8699951171875	3	368.868534	1103.58377	3.183	0.0011741	0.34243	0.00012631	3.5255	0.0013004	368.86868038651465	20.867	2.0627	20.867	20.709	22.772	0					107	41	5	0	0	0	0.59411	1	6685	6685		50.025	50.025	1	35802000	+		46362	17994	30673	30795	46952	46952	631				0.03612465473224802
VKGAGLGV	8	Unmodified	_VKGAGLGV_					0	0	0		ENST00000586972.1_1_17:40265669-40266402:-|nuORF	ENST00000586972.1_1_17:40265669-40266402:-|nuORF	ENST00000586972.1_1_17:40265669-40266402:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	350.72125244140625	2	350.721239	699.427924	0.16745	5.8728E-05	-0.2985	-0.00010469	-0.13106	-4.5964E-05	350.7211285788705	34.379	0.20957	34.379	34.259	34.468	0					17	10	2	0	0	0	0.78146	1	11219	11219		23.037	1.3344	1	131610			46363	10910	30674	30796	46953	46953					0.06618763014148499
VKGELKINY	9	Unmodified	_VKGELKINY_					0	0	0			REV__nc|ENSG00000196482|P62508-4|ESRRG	REV__nc|ENSG00000196482|P62508-4|ESRRG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.3107299804688	2	532.310949	1062.60735	2.3782	0.0012659	-1.696	-0.00090282	0.68215	0.00036312	532.3098412703125	38.406	0.20584	38.406	38.359	38.565	0					11	6	3	0	0	0	0.027316	1	14597	14597		111.65	18.453	1	124660	+		46364	17259	30675	30797	46954	46954					0.07854602511406483
VKGGQKGRGSM	11	Unmodified	_VKGGQKGRGSM_					0	0	0			REV__ENSG00000246705|ENST00000544848|H2AJ	REV__ENSG00000246705|ENST00000544848|H2AJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.80126953125	2	552.800757	1103.58696	1.3202	0.00072979	-0.32803	-0.00018134	0.99213	0.00054845	552.8005233085344	20.593	0.72578	20.593	20.483	21.209	0					48	22	3	0	0	0	0.10641	2	5526	5526;5732		80.455	0	1	1615700	+		46365	17713	30676	30798	46955;46956	46955					0.03931108579968168
VKGHLFHHQ	9	Unmodified	_VKGHLFHHQ_					0	0	0			REV__ENST00000392952.7_1_10:116194658-116195159:-|nuORF	REV__ENST00000392952.7_1_10:116194658-116195159:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.798828125	2	551.798875	1101.5832	0.26353	0.00014542	-0.18432	-0.00010171	0.079209	4.3707E-05	551.7987543229598	30.303	0.28071	30.303	30.141	30.422	0					14	9	3	0	0	0	0.54267	1	9934	9934		27.882	0	1	189660	+		46366	18838	30677	30799	46957	46957					0.03646806868414387
VKGKMPLASK	10	Unmodified	_VKGKMPLASK_					0	0	0			REV__ENST00000557743.2_1_14:89756667-89757087:-|nuORF	REV__ENST00000557743.2_1_14:89756667-89757087:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.8226318359375	2	529.823169	1057.63179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.687	1	22.687	22.187	23.187	0								0	0	0	0.40063	1	6801	6801		30.318	2.4355	1		+		46367	20262	30678	30800	46958	46958					0.10527539393297047
VKGNVQVAI	9	Unmodified	_VKGNVQVAI_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2841796875	2	464.284734	926.554916	-2.3621	-0.0010967	1.6812	0.00078055	-0.68092	-0.00031614	464.285341898069	32.445	0.097115	32.445	32.378	32.476	0					5	3	2	0	0	0	0.41354	1	11292	11292		40.573	1.3198	1	67394	+		46368	22098	30679	30801	46959	46959					0.08870064168456793
VKGSFFFSK	9	Unmodified	_VKGSFFFSK_					0	0	0			REV__chr13:113585149-113585774|152|17.7|0.97|4.19|+|2|None,TFDP1|1	REV__chr13:113585149-113585774|152|17.7|0.97|4.19|+|2|None,TFDP1|1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	349.52545166015625	3	349.527165	1045.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.586	1	15.586	15.086	16.086	0								0	0	0	0.37517	1	3585	3585		18.262	1.5447	1		+		46369	12466	30680	30802	46960	46960					0.038709483112370435
VKGSKSSA	8	Unmodified	_VKGSKSSA_					0	0	0		nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	382.2198486328125	2	382.21906	762.423567	-0.33669	-0.00012869	1.5933	0.00060898	1.2566	0.00048029	382.219551031962	47.541	0.11829	47.541	47.457	47.575	0					11	7	2	0	0	0	0.78142	1	14542	14542		23.042	6.5693	1	61874			46370	3993	30681	30803	46961	46961					0.03285253800572718
VKGSRNRP	8	Unmodified	_VKGSRNRP_					0	0	0			REV__ENST00000306085.10_3_7:100737901-100738075:+|nuORF	REV__ENST00000306085.10_3_7:100737901-100738075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.270263671875	2	457.26995	912.525347	0.72177	0.00033004	-0.38513	-0.00017611	0.33663	0.00015393	457.2697099309853	10.952	0.077314	10.952	10.918	10.995	0					7	4	2	0	0	0	0.78142	1	2141	2141		23.042	1.0826	1	53985	+		46371	18243	30682	30804	46962	46962					0.06558544942981825
VKHFHANQ	8	Unmodified	_VKHFHANQ_					0	0	0		ENST00000482031.5_1_2:238973007-238991399:+|nuORF;nc|ENSG00000132330|Q96I15-2|SCLY;ENSG00000132330|ENST00000254663|SCLY	ENST00000482031.5_1_2:238973007-238991399:+|nuORF	ENST00000482031.5_1_2:238973007-238991399:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7574768066406	2	490.756675	979.498798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.487	1	16.487	15.987	16.987	0								0	0	0	1.7419	1	4574	4574		25.45	0	1				46372	3776	30683	30805	46963	46963					0.00822856051661347
VKHLEEAL	8	Unmodified	_VKHLEEAL_					0	0	0			REV__KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	REV__KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.76861572265625	2	469.768917	937.523281	-0.62516	-0.00029368	0.76773	0.00036066	0.14257	6.6976E-05	469.7694764237281	26.161	0.29795	26.161	26.07	26.368	0					11	7	2	0	0	0	0.3961	1	9000	9000		71.296	2.5089	1	439300	+		46373	14475	30684	30806	46964	46964					0.052020714145328384
VKIHITGLRND	11	Unmodified	_VKIHITGLRND_					0	0	0		nc|ENSG00000164287|Q86Y33-4|CDC20B;nc|ENSG00000164287|Q86Y33-3|CDC20B;nc|ENSG00000164287|Q86Y33-2|CDC20B;ENSG00000164287|ENST00000381375|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	633.3704833984375	2	633.369861	1264.72517	0.50409	0.00031928	-0.17386	-0.00011012	0.33023	0.00020916	633.3694533540541	54.489	0.40428	54.489	54.194	54.598	0					34	25	3	0	0	0	0.81333	1	19725	19725		12.207	2.501	1	106400			46374	5674	30685	30807	46965	46965					0.1033955510006308
VKILVAAVAG	10	Unmodified	_VKILVAAVAG_					0	0	0		nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	470.8127746582031	2	470.813128	939.611703	-0.43043	-0.00020265	-0.16788	-7.904E-05	-0.59831	-0.00028169	470.81300809468297	27.177	0.3442	27.177	27.087	27.432	0					22	13	2	0	0	0	0.4943	1	8329	8329		45.952	0	1	157620			46375	1936	30686	30808	46966	46966					0.13948111724971568
VKKEPRQL	8	Unmodified	_VKKEPRQL_					0	0	0		ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.301025390625	2	499.311284	996.608014	0.16581	8.2793E-05	-0.81488	-0.00040688	-0.64907	-0.00032409	499.31072647466794	23.831	0.22598	23.831	23.673	23.899	0					8	5	2	0	0	0	0.70598	1	7314	7314		30.504	23.768	1	30890			46376	4754	30687	30809	46967	46967					0.10957441951120472
VKKKIQSLQQ	10	Unmodified	_VKKKIQSLQQ_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.376953125	2	600.377155	1198.73976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.82	1	12.82	12.32	13.32	0								0	0	0	0.24873	1	2824	2824		58.23	3.4536	1				46377	11715	30688	30810	46968	46968					0.14833627248231096
VKKKKKNDL	9	Unmodified	_VKKKKKNDL_					0	0	0			REV__tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	REV__tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.5763854980469	3	367.576519	1099.70773	1.1318	0.00041603	-1.39	-0.00051095	-0.25823	-9.492E-05	367.57600227025597	16.171	0.3162	16.171	16.064	16.38	0					9	6	2	0	0	0	0.3269	1	4583	4583		47.96	0	1	254860	+		46378	21884	30689	30811	46969	46969					0.1618625956507458
VKKKNDNLLK	10	Unmodified	_VKKKNDNLLK_					0	0	0		ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000196834|ENST00000451531|POTEI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.376220703125	2	600.377155	1198.73976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.886	1	12.886	12.386	13.386	0								0	0	0	0.4201	1	3009	3009		19.997	0.89325	1				46379	7397;7857	30690	30812	46970	46970					0.1483362724820836
VKKKNDNLLK	10	Unmodified	_VKKKNDNLLK_					0	0	0		ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000196834|ENST00000451531|POTEI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.3775024414062	2	600.377155	1198.73976	2.0977	0.0012594	-1.7637	-0.0010589	0.33399	0.00020052	600.3762155774923	12.782	0.23578	12.782	12.649	12.885	0					8	5	2	0	0	0	0.049549	1	2819	2819		109.48	2.4708	1	243510			46380	7397;7857	30690	30812	46971	46971					0.1483362724820836
VKKLTPANI	9	Unmodified	_VKKLTPANI_					0	0	0		ENST00000573177.1_1_18:3604087-3604141:+|nuORF	ENST00000573177.1_1_18:3604087-3604141:+|nuORF	ENST00000573177.1_1_18:3604087-3604141:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.3161926269531	2	492.316035	982.617516	-0.58974	-0.00029034	0.039945	1.9666E-05	-0.5498	-0.00027067	492.31612050932455	33.558	0.71915	33.558	33.399	34.118	0					49	15	6	0	0	0	0.61124	1	12982	12982		14.865	0	1	22762000			46381	10816	30691	30813	46972	46972					0.12551210236654242
VKKSRGGRR	9	Unmodified	_VKKSRGGRR_					0	0	0			REV__ENST00000324238.6_1_17:29131068-29151569:-|nuORF	REV__ENST00000324238.6_1_17:29131068-29151569:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.3321533203125	2	522.330873	1042.64719	5.179	0.0027051	-2.4025	-0.0012549	2.7764	0.0014502	522.329398225243	16.056	0.09783	16.056	15.987	16.085	0					7	3	3	0	0	0	0.18605	1	3773	3773		63.306	0.32785	1	164870	+		46382	18346	30692	30814	46973	46973					0.12757587025362227
VKKWCLIV	8	Unmodified	_VKKWCLIV_					0	0	0			REV__nc|ENSG00000186314|Q8N945|PRELID2	REV__nc|ENSG00000186314|Q8N945|PRELID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.2059326171875	3	330.205258	987.593944	0.27849	9.1957E-05	1.8711	0.00061786	2.1496	0.00070982	330.2058908857166	28.365	0.13647	28.365	28.33	28.467	0					5	4	2	0	0	0	0.65276	1	8855	8855		40.573	0	1	157070	+		46383	21160	30693	30815	46974	46974					0.09965073198486607
VKLCRECLEKQ	11	Unmodified	_VKLCRECLEKQ_					0	0	0		ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.2361755371094	3	450.240702	1347.70028	-1.1851	-0.00053358	-2.315	-0.0010423	-3.5001	-0.0015759	450.2393656682004	24.158	0.555	24.158	23.797	24.352	0					32	18	2	0	0	0	0.62791	1	7364	7364		34.501	1.4615	1	138500			46384	2923	30694	30816	46975	46975					0.040334159108397216
VKLCRECLEKQ	11	Unmodified	_VKLCRECLEKQ_					0	0	0		ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.2384033203125	3	450.240702	1347.70028	-0.20201	-9.0955E-05	-3.7555	-0.0016909	-3.9575	-0.0017818	450.23879197015236	24.316	0.36543	24.316	24.035	24.4	0					13	8	2	0	0	0	0.70078	1	7555	7555		27.554	4.1758	1	71884			46385	2923	30694	30816	46976	46976					0.040334159108397216
VKLGLYVLP	9	Unmodified	_VKLGLYVLP_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3212585449219	2	501.323328	1000.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.382	1	16.382	15.882	16.882	0								0	0	0	0.2591	1	3873	3873		19.36	0	1		+		46386	14028	30695	30817	46977	46977					0.13181282384800852
VKLIIQPI	8	Unmodified	_VKLIIQPI_					0	0	0			REV__ENST00000440835.6_1_12:71032743-71032788:-|nuORF	REV__ENST00000440835.6_1_12:71032743-71032788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.3179016113281	2	462.318046	922.621539	-0.8007	-0.00037018	-0.21288	-9.8417E-05	-1.0136	-0.00046859	462.31785930983904	41.501	0.16042	41.501	41.421	41.582	0					16	9	2	0	0	0	0.68754	1	13778	13778		35.201	0	1	87968	+		46387	19231	30696	30818	46978	46978					0.15713299730361996
VKLKTESHY	9	Unmodified	_VKLKTESHY_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.8065185546875	2	552.806031	1103.59751	0.22673	0.00012534	0.46974	0.00025967	0.69646	0.00038501	552.8059372199072	37.066	0.16417	37.066	37.004	37.168	0					12	9	2	0	0	0	0.40353	1	12545	12545		51.335	15.717	1	62588	+		46388	17606	30697	30819	46979	46979					0.04985414506040797
VKLVVEWD	8	Unmodified	_VKLVVEWD_					0	0	0		USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant;ENSG00000103404|ENST00000219689|USP31	USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant	USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.27850341796875	2	494.279118	986.543683	-1.268	-0.00062673	0.36059	0.00017823	-0.90737	-0.00044849	494.2793796215048	35.739	0.45506	35.739	35.538	35.993	0					51	22	3	0	0	0	0.59411	1	12057	12057		50.025	19.521	1	224750			46389	2236	30698	30820	46980	46980					0.0498724207432133
VKMNAVALTNK	11	Unmodified	_VKMNAVALTNK_					0	0	0			REV__FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant	REV__FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	396.8970947265625	3	396.897152	1187.66963	-2.2311	-0.00088553	2.0121	0.0007986	-0.21901	-8.6924E-05	396.89810286084946	15.574	0.15145	15.574	15.496	15.648	0					8	5	2	0	0	0	0.6208	1	3525	3525		35.178	0.026198	1	57092	+		46390	15576	30699	30821	46981	46981					0.08330005588095446
VKNALITD	8	Unmodified	_VKNALITD_					0	0	0			REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant	REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2553405761719	2	437.255643	872.496732	0.24329	0.00010638	-1.64	-0.0007171	-1.3967	-0.00061072	437.25507523532787	24.437	0.14884	24.437	24.367	24.516	0					7	4	2	0	0	0	0.49216	1	7222	7222		60.972	0	1	95526	+		46391	14606	30700	30822	46982	46982					0.055383825231729134
VKNLNGKSY	9	Unmodified	_VKNLNGKSY_					0	0	0		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;CACYBP|p.M127V|1|0.32|ENSG00000116161|chr1:175007144-175007144|A/G|missense_variant	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.78411865234375	2	511.785099	1021.55564	1.409	0.00072111	-1.4073	-0.00072025	0.0016771	8.583E-07	511.7842378462757	32.844	0.4448	32.844	32.706	33.151	0					17	9	4	0	0	0	0.30951	1	12535	12535		49.442	11.63	1	1746700			46392	355	30701	30823	46983	46983					0.04572858817527958
VKNNLKIGAK	10	Unmodified	_VKNNLKIGAK_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.23260498046875	3	362.232752	1083.67643	0.28798	0.00010432	-0.73006	-0.00026445	-0.44208	-0.00016013	362.2326370231486	22.969	0.16725	22.969	22.911	23.078	0					5	3	2	0	0	0	0.30252	1	7864	7864		66.962	1.8047	1	84992	+		46393	14912	30702	30824	46984	46984					0.13793686530971172
VKPDTNGEY	9	Unmodified	_VKPDTNGEY_					0	0	0			REV__tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1	REV__tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.24853515625	2	511.743096	1021.47164	1.4098	0.00072147	-1.8049	-0.00092367	-0.39511	-0.0002022	511.7422649519109	37.029	1.0534	37.029	36.313	37.366	0					52	21	4	0	0	0	0.41354	1	14263	14263		40.573	1.3198	1	1689100	+		46394	21908	30703	30825	46985	46985					-0.03823717070042676
VKPGRAALP	9	Unmodified	_VKPGRAALP_					0	0	0			REV__ENST00000593586.1_1_19:40723001-40723700:-|nuORF	REV__ENST00000593586.1_1_19:40723001-40723700:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.7872009277344	2	454.787444	907.560336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.147	1	20.147	19.647	20.647	0								0	0	0	0.39567	1	5610	5610		12.207	3.9756	1		+		46395	20550	30704	30826	46986	46986					0.1028578775093365
VKPKFEKK	8	Unmodified	_VKPKFEKK_					0	0	0		ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF;ENSG00000138646|ENST00000264350|HERC5	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.3182067871094	2	502.318577	1002.6226	0.50523	0.00025378	0.050765	2.55E-05	0.55599	0.00027928	502.31849118422	31.797	0.076925	31.797	31.776	31.853	0					5	3	2	0	0	0	0.72524	1	10240	10240		27.882	8.5223	1	42515			46396	4276	30705	30827	46987	46987					0.12139514099283133
VKQERLSPE	9	Unmodified	_VKQERLSPE_					0	0	0		ENSG00000163877|ENST00000296215|SNIP1;ENST00000493916.1_1_1:38018188-38019866:-|nuORF	ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.302978515625	2	543.301113	1084.58767	-1.4899	-0.00080945	2.0974	0.0011395	0.60753	0.00033007	543.3022824423151	26.813	0.14536	26.813	26.721	26.866	0					6	3	2	0	0	0	0.12239	1	8677	8677		74.255	2.9593	1	182840			46397	5617	30706	30828	46988	46988					0.04876226500641678
VKQSKAASE	9	Unmodified	_VKQSKAASE_					0	0	0			REV__RFX7|p.K235Sfs*10|1|0.05|ENSG00000181827|chr15:56098193-56098193|T/-|frameshift_variant	REV__RFX7|p.K235Sfs*10|1|0.05|ENSG00000181827|chr15:56098193-56098193|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2625427246094	2	474.261456	946.50836	-0.014988	-7.1084E-06	3.144	0.0014911	3.129	0.001484	474.26289988034887	40.232	0.10987	40.232	40.158	40.268	0					9	6	2	0	0	0	0.46194	1	13014	13014		36.447	4.4919	1	75727	+		46398	21458	30707	30829	46989	46989					0.03296579546508838
VKRGSWDEM	9	Unmodified	_VKRGSWDEM_					0	0	0			REV__nc|ENSG00000136859|Q9UKU9-2|ANGPTL2	REV__nc|ENSG00000136859|Q9UKU9-2|ANGPTL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2679443359375	2	554.266216	1106.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.858	1	36.858	36.358	37.358	0								0	0	0	0.35377	1	13934	13934		24.519	2.8169	1		+		46399	14883	30708	30830	46990	46990					-0.031119754396058852
VKRNGPGG	8	Unmodified	_VKRNGPGG_					0	0	0		ENST00000498406.1_1_22:21355062-21355995:-|nuORF;ENST00000471073.1_1_22:21355515-21355995:-|nuORF	ENST00000498406.1_1_22:21355062-21355995:-|nuORF	ENST00000498406.1_1_22:21355062-21355995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.7249450683594	2	392.724844	783.435135	-0.66956	-0.00026295	0.77482	0.00030429	0.10526	4.1338E-05	392.7250989871441	45.761	0.24281	45.761	45.655	45.898	0					15	10	2	0	0	0	0.78216	1	18330	18330		8.8223	0.59103	1	109550			46400	9847	30709	30831	46991	46991					0.034754956145775395
VKSAQKRALR	10	Unmodified	_VKSAQKRALR_					0	0	0		ENST00000463814.1_1_7:143815556-143816108:-|nuORF	ENST00000463814.1_1_7:143815556-143816108:-|nuORF	ENST00000463814.1_1_7:143815556-143816108:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.8687133789062	2	578.867289	1155.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.277	1	23.277	22.777	23.777	0								0	0	0	0.24547	1	7683	7683		54.722	0	1				46401	9764	30710	30832	46992	46992					0.14839296028117133
VKSFRVLQA	9	Unmodified	_VKSFRVLQA_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.3192138671875	2	524.319109	1046.62366	1.7839	0.00093533	-1.4818	-0.00077694	0.30208	0.00015839	524.3182458491253	20.47	0.16677	20.47	20.412	20.579	0					6	3	2	0	0	0	0.15558	1	6652	6652		42.864	0	1	1107900			46402	4309	30711	30833	46993	46993					0.10221728468172842
VKSIKWCKN	9	Unmodified	_VKSIKWCKN_					0	0	0		ENST00000555784.5_1_10:84711227-84745358:+|nuORF;nc|ENSG00000185737|P56975-3|NRG3;NRG3|p.L694Pfs*18|1|0.26|ENSG00000185737|chr10:82985517-82985518|-/C|frameshift_variant;ENSG00000185737|ENST00000372141|NRG3;nc|ENSG00000185737|P56975-2|NRG3;nc|ENSG00000185737|P56975|NRG3	ENST00000555784.5_1_10:84711227-84745358:+|nuORF	ENST00000555784.5_1_10:84711227-84745358:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.21173095703125	3	369.211071	1104.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.992	1	41.992	41.492	42.492	0								0	0	0	0.3119	1	14728	14728		32.812	0.061884	1				46403	7101	30712	30834	46994	46994					0.063263687334711
VKSKTLKESN	10	Unmodified	_VKSKTLKESN_					0	0	0			REV__nc|ENSG00000166401|P50452-3|SERPINB8	REV__nc|ENSG00000166401|P50452-3|SERPINB8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.3303833007812	2	567.32987	1132.64519	0.17392	9.8668E-05	0.63372	0.00035953	0.80763	0.00045819	567.3301040425858	52.259	0.88865	52.259	51.905	52.794	0					103	54	3	0	0	0	0.69544	1	18581	18581		22.58	4.3176	1	172910	+		46404	16116	30713	30835	46995	46995					0.08417068706262398
VKSLGLKKM	9	Unmodified	_VKSLGLKKM_					0	0	0		tr|U7T1U5|U7T1U5_FUSNULargeribosomalsubunitproteinuL30OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmDPE=3SV=1	tr|U7T1U5|U7T1U5_FUSNULargeribosomalsubunitproteinuL30OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmDPE=3SV=1	tr|U7T1U5|U7T1U5_FUSNULargeribosomalsubunitproteinuL30OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmDPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.3189392089844	2	502.320263	1002.62597	-2.0772	-0.0010434	-1.4031	-0.00070482	-3.4804	-0.0017483	502.31968550534475	31.858	0.15198	31.858	31.771	31.923	0					7	5	2	0	0	0	0.4966	1	11013	11013		32.812	4.9302	1	51534			46405	22923	30714	30836	46996	46996					0.12476440881630424
VKSPNLSEI	9	Unmodified	_VKSPNLSEI_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant;PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant;PEAK1|p.N1433Tfs*19|1|0.1|ENSG00000173517|chr15:77115099-77115099|T/-|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.779296875	2	493.779482	985.544411	0.025443	1.2563E-05	-0.26474	-0.00013072	-0.2393	-0.00011816	493.7794082307369	26.804	0.74902	26.804	26.639	27.388	0					34	18	2	0	0	0	0.48389	1	8664	8664		34.173	0	1	103200			46406	6431	30715	30837	46997	46997					0.05106036723384477
VKSQVWSAY	9	Unmodified	_VKSQVWSAY_					0	0	0			REV__PRSS8|p.I281V|1|0.36|ENSG00000052344|chr16:31132200-31132200|T/C|missense_variant	REV__PRSS8|p.I281V|1|0.36|ENSG00000052344|chr16:31132200-31132200|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2802734375	2	534.279649	1066.54475	1.8265	0.00097584	-0.40333	-0.00021549	1.4231	0.00076035	534.2794549851903	34.481	0.35773	34.481	34.18	34.538	0					10	7	2	0	0	0	0.48389	1	13236	13236		34.173	0	1	202370	+		46407	21420	30716	30838	46998	46998					0.014134564432424668
VKSRFPEPF	9	Unmodified	_VKSRFPEPF_					0	0	0			REV__ENSG00000173599|ENST00000393960|PC	REV__ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.5377197265625	3	369.537953	1105.59203	0.76876	0.00028409	-1.2999	-0.00048037	-0.53116	-0.00019628	369.5374442638779	29.209	0.12798	29.209	29.169	29.296	0					5	3	2	0	0	0	0.4966	1	10420	10420		32.812	3.6629	1	241550	+		46408	16523	30717	30839	46999	46999					0.0434573571421879
VKSTGEVK	8	Unmodified	_VKSTGEVK_					0	0	0			REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF	REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	424.2475891113281	2	424.247818	846.481082	-1.1211	-0.00047562	0.22389	9.4987E-05	-0.8972	-0.00038063	424.24785260312814	23.45	0.12674	23.45	23.395	23.522	0					6	4	2	0	0	0	0.53424	1	7057	7057		56.721	3.3696	1	75993	+		46409	20224	30718	30840	47000	47000					0.051700960061339174
VKSTGEVKPI	10	Unmodified	_VKSTGEVKPI_					0	0	0			REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF	REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.317138671875	2	529.316232	1056.61791	3.4525	0.0018275	-2.2844	-0.0012092	1.168	0.00061827	529.3151491801992	27.935	0.21291	27.935	27.829	28.042	0					8	4	3	0	0	0	0.49411	1	10072	10072		45.972	1.5951	1	881850	+		46410	20224	30719	30841	47001	47001					0.09186585165844008
VKTCGPEPVK	10	Unmodified	_VKTCGPEPVK_					0	0	0			REV__ENSG00000163209|ENST00000295367|SPRR3	REV__ENSG00000163209|ENST00000295367|SPRR3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.290771484375	2	529.289159	1056.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.236	1	17.236	16.736	17.736	0								0	0	0	0.38475	1	4283	4283		35.152	5.982	1		+		46411	15864	30720	30842	47002	47002					0.037746697426200626
VKTLKDLGI	9	Unmodified	_VKTLKDLGI_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.8160400390625	2	493.815867	985.617182	0.25884	0.00012782	0.05538	2.7347E-05	0.31422	0.00015517	493.81586193256095	27.703	0.84324	27.703	27.427	28.27	0					38	20	3	0	0	0	0.38666	1	9022	9022		35.618	0.46626	1	106390			46412	6380	30721	30843	47003	47003					0.12379790516786215
VKVDTASK	8	Unmodified	_VKVDTASK_					0	0	0			REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	424.2476806640625	2	424.247818	846.481082	-0.021676	-9.1959E-06	-0.55716	-0.00023637	-0.57883	-0.00024557	424.24761314487927	23.518	0.094427	23.518	23.432	23.526	0					4	2	2	0	0	0	0.58597	1	7186	7186		51.335	0	1	67755	+		46413	13439	30722	30844	47004	47004					0.051700960061339174
VKVEASSPL	9	Unmodified	_VKVEASSPL_					0	0	0			REV__ENST00000476708.1_1_9:93564254-93564314:+|nuORF	REV__ENST00000476708.1_1_9:93564254-93564314:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.26824951171875	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.826	1	22.826	22.326	23.326	0								0	0	0	0.21054	1	6514	6514		49.442	0	1		+		46414	19541	30723	30845	47005	47005					0.05582651694669494
VKVGHVQY	8	Unmodified	_VKVGHVQY_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.263427734375	2	465.263802	928.513051	0.69333	0.00032258	-1.4482	-0.00067378	-0.75484	-0.0003512	465.263206366587	29.775	0.66485	29.775	29.532	30.197	0					22	13	2	0	0	0	0.64096	1	10966	10966		42.474	7.2737	1	697490			46415	2766	30724	30846	47006	47006					0.04593508479945285
VKVLDDIN	8	Unmodified	_VKVLDDIN_					0	0	0			REV__ENSG00000168924|ENST00000302787|LETM1	REV__ENSG00000168924|ENST00000302787|LETM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.2604675292969	2	458.260925	914.507297	-0.64192	-0.00029417	-0.57936	-0.0002655	-1.2213	-0.00055967	458.26070108473556	34.14	0.12133	34.14	34.06	34.181	0					5	3	2	0	0	0	0.37378	1	12700	12700		73.975	2.679	1	138570	+		46416	16285	30725	30847	47007	47007					0.04662365177603078
VKVLSEKAIL	10	Unmodified	_VKVLSEKAIL_					0	0	0		ENSG00000163512|ENST00000479665|AZI2	ENSG00000163512|ENST00000479665|AZI2	ENSG00000163512|ENST00000479665|AZI2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.3582763671875	2	550.357899	1098.70125	1.8338	0.0010093	-0.88772	-0.00048856	0.94611	0.0005207	550.3573103832513	26.209	0.38153	26.209	26.042	26.423	0					22	9	4	0	0	0	0.7005	1	9025	9025		21.96	0	1	538970			46417	5567	30726	30848	47008	47008					0.15584321613710017
VKVNNGPL	8	Unmodified	_VKVNNGPL_					0	0	0		nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM;PTPRM|p.T322Rfs*34|1|0.27|ENSG00000173482|chr18:7955247-7955247|C/-|frameshift_variant	nc|ENSG00000173482|P28827|PTPRM	nc|ENSG00000173482|P28827|PTPRM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	420.7498474121094	2	420.750527	839.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.676	1	36.676	36.176	37.176	0								0	0	0	1.7419	1	13131	13131		26.796	1.3459	1				46418	6430	30727	30849	47009	47009					0.06033819588606093
VKVQGQGGNF	10	Unmodified	_VKVQGQGGNF_					0	0	0		ENST00000604957.1_2_X:101855873-101855999:+|nuORF	ENST00000604957.1_2_X:101855873-101855999:+|nuORF	ENST00000604957.1_2_X:101855873-101855999:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2752075195312	2	517.274898	1032.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.178	1	41.178	40.678	41.678	0								0	0	0	0.35368	1	13223	13223		42.396	5.237	1				46419	11069	30728	30850	47010	47010					0.020276881577274253
VKVRCMVM	8	Oxidation (M)	_VKVRCM(Oxidation (M))VM_		VKVRCM(1)VM		VKVRCM(37)VM(-37)	0	0	1			REV__ENSG00000115825|ENST00000234179|PRKD3	REV__ENSG00000115825|ENST00000234179|PRKD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2574462890625	2	491.255751	980.496949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.93	1	39.93	39.43	40.43	0								0	0	0	1.7419	1	15817	15817		46.766	6.1938	2		+		46420	14126	30729	30851	47011	47011		535			0.005920196555393886
VKVSALGLSK	10	Unmodified	_VKVSALGLSK_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5500183105469	3	334.54997	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.255	1	16.255	15.755	16.755	0								0	0	0	0.29806	1	4462	4462		47.228	2.2055	1				46421	2751	30730	30852	47012	47012					0.12779192891082403
VKYDSSLR	8	Unmodified	_VKYDSSLR_					0	0	0		CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant;ENSG00000185015|ENST00000321764|CA13;ENST00000517298.5_1_8:86163045-86179484:+|nuORF	CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant	CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.26373291015625	2	484.263999	966.513445	-0.19354	-9.3723E-05	-0.26111	-0.00012645	-0.45465	-0.00022017	484.2636778273936	34.369	0.20798	34.369	34.246	34.454	0					8	5	2	0	0	0	0.66989	1	12806	12806		37.812	0.65241	1	174180			46422	340	30731	30853	47013	47013					0.02884883409149097
VKYLGLSAV	9	Unmodified	_VKYLGLSAV_					0	0	0		PCYOX1|p.D105Y|1|0.44|ENSG00000116005|chr2:70259560-70259560|G/T|missense_variant	PCYOX1|p.D105Y|1|0.44|ENSG00000116005|chr2:70259560-70259560|G/T|missense_variant	PCYOX1|p.D105Y|1|0.44|ENSG00000116005|chr2:70259560-70259560|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2892761230469	2	475.289485	948.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.327	1	40.327	39.827	40.827	0								0	0	0	0.29774	1	15369	15369		35.618	6.4687	1				46423	11914	30732	30854	47014	47014					0.08807832453999254
VKYLSKRNP	9	Unmodified	_VKYLSKRNP_					0	0	0		KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1	KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant	KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	368.8888244628906	3	368.888986	1103.64513	-1.0079	-0.00037179	0.62754	0.00023149	-0.38032	-0.00014029	368.88918258226863	21.923	0.16263	21.923	21.852	22.015	0					8	5	2	0	0	0	0.60749	1	6382	6382		20.947	0	1	70085			46424	3923	30733	30855	47015	47015					0.09745113496910562
VLAAAVGGPD	10	Unmodified	_VLAAAVGGPD_					0	0	0		ENST00000547739.1_1_12:100967536-100972460:+|nuORF	ENST00000547739.1_1_12:100967536-100972460:+|nuORF	ENST00000547739.1_1_12:100967536-100972460:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2398681640625	2	435.239993	868.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.968	1	19.968	19.468	20.468	0								0	0	0	0.37276	1	5527	5527		38.806	3.6054	1				46425	10592	30734	30856	47016	47016					0.025938094890989305
VLAAKVPG	8	Unmodified	_VLAAKVPG_					0	0	0		CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant;CHD8|p.V1538*|1|0.4|ENSG00000100888|chr14:21400267-21400267|T/-|frameshift_variant;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.I351Nfs*70|1|0.25|ENSG00000100888|chr14:21429127-21429128|-/T|frameshift_variant	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	377.74578857421875	2	377.744714	753.474875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.572	1	34.572	34.072	35.072	0								0	0	0	1.7419	1	11308	11308		9.4706	0	1				46426	507	30735	30857	47017	47017					0.0882762256528622
VLAASSLYFK	10	Unmodified	_VLAASSLYFK_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.S181Pfs*5|1|0.24|ENSG00000177311|chr3:141442926-141442926|T/-|frameshift_variant;ZBTB38|p.R152Gfs*34|1|0.48|ENSG00000177311|chr3:141442837-141442837|A/-|frameshift_variant	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.3184204101562	2	549.813325	1097.6121	-1.447	-0.0007956	3.3442	0.0018387	1.8972	0.0010431	549.8145265804482	28.236	0.38765	28.236	28.132	28.519	0					21	9	3	0	0	0	0.56063	1	9447	9447		42.396	0	1	508350			46427	6658	30736	30858	47018	47018					0.06719486654174034
VLADMEEFFPC	11	Unmodified	_VLADMEEFFPC_					0	0	0			REV__ENST00000570181.2_1_15:43656083-43656590:-|nuORF	REV__ENST00000570181.2_1_15:43656083-43656590:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	650.783203125	2	650.78305	1299.55155	0.2104	0.00013692	-0.61596	-0.00040086	-0.40557	-0.00026393	650.7828988695323	14.859	0.095657	14.859	14.807	14.902	0					4	2	2	0	0	0	0.64562	1	3722	3722		32.812	11.865	1	458140	+		46428	15065	30737	30859	47019	47019					-0.0862473478271113
VLALPPGG	8	Unmodified	_VLALPPGG_					0	0	0		ENST00000306085.10_3_7:100728844-100730655:+|nuORF	ENST00000306085.10_3_7:100728844-100730655:+|nuORF	ENST00000306085.10_3_7:100728844-100730655:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.22222900390625	2	362.223614	722.432676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.283	1	48.283	47.783	48.783	0								0	0	0	1.7419	1	15221	15221		16.705	0	1				46429	8518	30738	30860	47020	47020					0.06035647156909363
VLALTLPQL	9	Unmodified	_VLALTLPQL_					0	0	0		ENST00000591512.2_2_19:12946148-12946217:-|nuORF	ENST00000591512.2_2_19:12946148-12946217:-|nuORF	ENST00000591512.2_2_19:12946148-12946217:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.3139953613281	2	484.312961	966.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.404	1	41.404	40.904	41.904	0								0	0	0	0.3304	1	15737	15737		29.15	0.89528	1				46430	10964	30739	30861	47021	47021					0.12672692005139652
VLAQLQAVR	9	Unmodified	_VLAQLQAVR_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.3116455078125	2	499.311284	996.608014	-2.1716	-0.0010843	2.6914	0.0013438	0.51972	0.0002595	499.312534579838	18.426	0.14908	18.426	18.327	18.476	0					6	4	2	0	0	0	0.38666	1	4802	4802		44.117	3.3386	1	95327			46431	4207	30740	30862	47022	47022					0.10957441951131841
VLARKLAEK	9	Unmodified	_VLARKLAEK_					0	0	0		nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.2254943847656	3	343.225598	1026.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.33	1	18.33	17.83	18.83	0								0	0	0	0.1836	1	4762	4762		51.193	0	1				46432	4975	30741	30863	47023	47023					0.14270301502256189
VLAYNAIAQ	9	Unmodified	_VLAYNAIAQ_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.2665100097656	2	481.768917	961.523281	0.68861	0.00033175	-1.923	-0.00092646	-1.2344	-0.00059471	481.7684421870246	32.601	1.1436	32.601	32.126	33.269	0					78	27	6	0	0	0	0.41354	1	12247	12247		40.573	7.057	1	2666800	+		46433	15383	30742	30864	47024	47024					0.040980714145121055
VLCDRQLTK	9	Unmodified	_VLCDRQLTK_					0	0	0			REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	359.2010192871094	3	359.202465	1074.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.425	1	33.425	32.925	33.925	0								0	0	0	0.22284	1	10867	10867		47.657	3.2801	1		+		46434	17068	30743	30865	47025	47025					0.051254744912057504
VLCEVCWTY	9	Unmodified	_VLCEVCWTY_					0	0	0		ENST00000561529.1_1_16:71599967-71606118:+|nuORF	ENST00000561529.1_1_16:71599967-71606118:+|nuORF	ENST00000561529.1_1_16:71599967-71606118:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.2495727539062	2	558.248646	1114.48274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.278	1	39.278	38.778	39.778	0								0	0	0	0.27166	1	15510	15510		40.573	6.4001	1				46435	10711	30744	30866	47026	47026					-0.06992354291764968
VLCPIWLDD	9	Unmodified	_VLCPIWLDD_					0	0	0		CD163L1|p.R215C|1|0.23|ENSG00000177675|chr12:7432539-7432539|G/A|missense_variant	CD163L1|p.R215C|1|0.23|ENSG00000177675|chr12:7432539-7432539|G/A|missense_variant	CD163L1|p.R215C|1|0.23|ENSG00000177675|chr12:7432539-7432539|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2686767578125	2	537.270435	1072.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.228	1	28.228	27.728	28.728	0								0	0	0	0.34228	1	10319	10319		26.796	4.8362	1				46436	423	30745	30867	47027	47027					-0.007044215229825568
VLCPPPVKK	9	Unmodified	_VLCPPPVKK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.80157470703125	2	490.801706	979.588859	-0.057098	-2.8024E-05	-0.52266	-0.00025652	-0.57976	-0.00028455	490.8015709633848	22.389	0.54175	22.389	22.27	22.812	0					39	16	4	0	0	0	0.098791	1	6294	6294		63.306	5.495	1	784550			46437	4065	30746	30868	47028	47028					0.09824769335864403
VLCPPPVKK	9	Unmodified	_VLCPPPVKK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	327.53680419921875	3	327.536896	979.588859	-0.66771	-0.0002187	0.16535	5.4157E-05	-0.50236	-0.00016454	327.5370552111529	22.472	0.43803	22.472	22.291	22.729	0					38	13	4	0	0	0	0.071197	1	6575	6575		87.754	50.595	1	1548300			46438	4065	30746	30868	47029	47029					0.09824769335864403
VLCPPPVKK	9	Unmodified	_VLCPPPVKK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.8015441894531	2	490.801706	979.588859	-1.3159	-0.00064586	0.73425	0.00036037	-0.58167	-0.00028549	490.8021488034971	22.464	0.38049	22.464	22.281	22.661	0					31	11	4	0	0	0	0.098791	1	6589	6589		63.306	7.8021	1	610330			46439	4065	30746	30868	47030	47030					0.09824769335864403
VLCPPPVKK	9	Unmodified	_VLCPPPVKK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.80145263671875	2	490.801706	979.588859	-0.72764	-0.00035713	0.10074	4.9444E-05	-0.6269	-0.00030768	490.80190287379526	22.592	0.9115	22.592	22.384	23.295	0					48	18	4	0	0	0	0.087861	1	7633	7633		65.803	5.5092	1	3334500			46440	4065	30746	30868	47031	47031					0.09824769335864403
VLCPPPVKK	9	Unmodified	_VLCPPPVKK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.5367736816406	3	327.536896	979.588859	-0.025922	-8.4904E-06	-0.48526	-0.00015894	-0.51118	-0.00016743	327.5368478102622	22.457	0.37244	22.457	22.333	22.706	0					20	8	3	0	0	0	0.22377	1	6671	6671		58.782	31.986	1	380300			46441	4065	30746	30868	47032	47032					0.09824769335864403
VLCPPPVKK	9	Unmodified	_VLCPPPVKK_					0	0	0		ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENSG00000169750|ENST00000306897|RAC3	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	327.5364685058594	3	327.536896	979.588859	-1.9073	-0.0006247	0.54303	0.00017786	-1.3642	-0.00044684	327.53716945754024	22.462	0.41527	22.462	22.321	22.737	0					25	9	4	0	0	0	0.33044	1	6681	6681		47.657	12.457	1	522050			46442	4065	30746	30868	47033	47033					0.09824769335864403
VLCRRLFD	8	Unmodified	_VLCRRLFD_					0	0	0			REV__ENSG00000010219|ENST00000543431|DYRK4	REV__ENSG00000010219|ENST00000543431|DYRK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.28741455078125	2	511.284211	1020.55387	3.0872	0.0015784	3.0403	0.0015545	6.1275	0.0031329	511.2860153839381	36.286	0.71365	36.286	36.149	36.863	0					37	14	3	0	0	0	0.65276	1	14084	14084		40.573	0	1	906100	+		46443	12890	30747	30869	47034	47034					0.044415265279099
VLCYVKKK	8	Unmodified	_VLCYVKKK_					0	0	0			REV__ENST00000519324.1_1_8:99264547-99306317:-|nuORF	REV__ENST00000519324.1_1_8:99264547-99306317:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.80181884765625	2	490.801706	979.588859	-0.50559	-0.00024814	0.045338	2.2252E-05	-0.46025	-0.00022589	490.80183730790964	22.721	0.76195	22.721	22.501	23.263	0					55	18	5	0	0	0	0.30437	1	7391	7391		60.294	6.9425	1	4929400	+		46444	19936	30748	30870	47035	47035					0.09824769335875772
VLDIRKNL	8	Unmodified	_VLDIRKNL_					0	0	0		CEP78|p.P295L|1|0.14|ENSG00000148019|chr9:78246774-78246774|C/T|missense_variant	CEP78|p.P295L|1|0.14|ENSG00000148019|chr9:78246774-78246774|C/T|missense_variant	CEP78|p.P295L|1|0.14|ENSG00000148019|chr9:78246774-78246774|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.2062683105469	3	324.206315	969.597115	0.28857	9.3556E-05	0.063592	2.0617E-05	0.35216	0.00011417	324.20636695160675	24.171	0.09432	24.171	24.12	24.215	0					6	3	2	0	0	0	0.78999	1	7101	7101		10.866	0	1	65370			46445	490	30749	30871	47036	47036					0.11110039576851705
VLEEMEAR	8	Unmodified	_VLEEMEAR_					0	0	0		nc|ENSG00000104863|Q9HAP6-2|LIN7B;ENST00000474252.1_1_19:49618516-49621276:+|nuORF;ENSG00000104863|ENST00000221459|LIN7B;ENST00000469137.5_1_19:49617849-49621627:+|nuORF;LIN7A|p.K191N|1|0.12|ENSG00000111052|chr12:80811594-80811594|T/G|missense_variant;ENSG00000111052|ENST00000552864|LIN7A	nc|ENSG00000104863|Q9HAP6-2|LIN7B	nc|ENSG00000104863|Q9HAP6-2|LIN7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.74090576171875	2	488.742042	975.469531	-1.2501	-0.00061098	-1.7353	-0.0008481	-2.9854	-0.0014591	488.7412322584948	28.351	0.17743	28.351	28.294	28.472	0					13	6	3	0	0	0	0.46905	1	9136	9136		63.306	24.053	1	265460			46446	2313	30750	30872	47037	47037					-0.019184690795100323
VLEKCLQEDV	10	Unmodified	_VLEKCLQEDV_					0	0	0		ENSG00000152240|ENST00000282058|HAUS1;nc|ENSG00000152240|Q96CS2-2|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.53692626953125	3	392.537401	1174.59037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.975	1	35.975	35.475	36.475	0								0	0	0	0.39264	1	12848	12848		32.751	1.1163	1				46447	5004	30751	30873	47038	47038					0.01006313843299722
VLELEAKM	8	Unmodified	_VLELEAKM_					0	0	0		CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant;CLIP1|p.M1151Wfs*8|1|0.31|ENSG00000130779|chr12:122316771-122316771|T/-|frameshift_variant;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	CLIP1|p.E992Lfs*32|1|0.2|ENSG00000130779|chr12:122328315-122328321|TGCTTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.7601318359375	2	466.759704	931.504854	-0.13356	-6.2339E-05	0.34346	0.00016031	0.2099	9.7975E-05	466.7598812935215	34.678	0.16089	34.678	34.585	34.746	0					7	4	2	0	0	0	0.29779	1	13389	13389		83.287	6.4406	1	71347			46448	555	30752	30874	47039	47039					0.03636193448301128
VLEQQRIGL	9	Unmodified	_VLEQQRIGL_					0	0	0		ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000162825|ENST00000698833|NBPF20	ENSG00000263956|ENST00000682118|NBPF11	ENSG00000263956|ENST00000682118|NBPF11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.314453125	2	528.314023	1054.61349	0.10812	5.7122E-05	0.22336	0.000118	0.33148	0.00017512	528.31438846775	30.912	0.13297	30.912	30.822	30.955	0					9	3	3	0	0	0	0.35021	1	11205	11205		45.972	13.16	1	252620			46449	5501	30753	30875	47040	47040					0.08837120742941806
VLERRVHF	8	Unmodified	_VLERRVHF_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.3085327148438	2	528.309075	1054.6036	0.52862	0.00027928	-1.2821	-0.00067734	-0.75347	-0.00039807	528.3081501476621	39.746	0.20978	39.746	39.69	39.9	0					17	12	2	0	0	0	0.75243	1	12891	12891		26.796	0	1	58534			46450	4207	30754	30876	47041	47041					0.07847977528217598
VLESALKR	8	Unmodified	_VLESALKR_					0	0	0			REV__tr|U7SU89|U7SU89_FUSNUD-glycero-beta-D-manno-heptose1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01064PE=4SV=1	REV__tr|U7SU89|U7SU89_FUSNUD-glycero-beta-D-manno-heptose1-phosphateadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01064PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2841796875	2	458.284734	914.554916	-0.98358	-0.00045076	0.85645	0.0003925	-0.12713	-5.826E-05	458.2850097166842	14.607	0.12404	14.607	14.553	14.677	0					9	5	2	0	0	0	0.41952	1	3191	3191		68.485	2.6815	1	113570	+		46451	21964	30755	30877	47042	47042					0.09422064168461475
VLETSPDILL	10	Unmodified	_VLETSPDILL_					0	0	0		ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.2134704589844	3	367.213024	1098.61724	-2.0762	-0.00076242	2.571	0.00094409	0.49472	0.00018167	367.21385492755184	28.29	0.38357	28.29	28.176	28.56	0					11	9	2	0	0	0	0.52275	1	9428	9428		42.864	7.7122	1	156520			46452	3119	30756	30878	47043	47043					0.07187745726150752
VLFAAQEEM	9	Unmodified	_VLFAAQEEM_					0	0	0			REV__nc|ENSG00000131471|Q16853-3|AOC3	REV__nc|ENSG00000131471|Q16853-3|AOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2535400390625	2	519.252243	1036.48993	1.3835	0.0007184	-1.347	-0.00069945	0.036495	1.895E-05	519.2516839946546	39.007	0.33516	39.007	38.897	39.233	0					21	12	3	0	0	0	0.043797	1	14834	14834		97.473	12.312	1	353840	+		46453	12172	30757	30879	47044	47044					-0.026852984197148544
VLFAGQHISK	10	Unmodified	_VLFAGQHISK_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant;FLNB|p.G531Dfs*42|3|0.4|ENSG00000136068|chr3:58104061-58104061|G/-|frameshift_variant;FLNB|p.H532Tfs*9|1|0.31|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;FLNB|p.N453Kfs*26|1|0.31|ENSG00000136068|chr3:58102212-58102213|-/A|frameshift_variant	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.3167114257812	2	550.316566	1098.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.894	1	26.894	26.394	27.394	0								0	0	0	0.13836	1	8227	8227		59.931	13.959	1				46454	4052	30758	30880	47045	47045					0.07321424605538596
VLFAGQHISK	10	Unmodified	_VLFAGQHISK_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant;FLNB|p.G531Dfs*42|3|0.4|ENSG00000136068|chr3:58104061-58104061|G/-|frameshift_variant;FLNB|p.H532Tfs*9|1|0.31|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;FLNB|p.N453Kfs*26|1|0.31|ENSG00000136068|chr3:58102212-58102213|-/A|frameshift_variant	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.3170166015625	2	550.316566	1098.61858	0.19692	0.00010837	0.708	0.00038962	0.90491	0.00049799	550.3167814706318	27.144	0.21438	27.144	27.039	27.254	0					7	4	2	0	0	0	0.30023	1	9816	9816		63.426	13.89	1	268260			46455	4052	30758	30880	47046	47046					0.07321424605538596
VLFAPSNNVL	10	Unmodified	_VLFAPSNNVL_					0	0	0		tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.3010864257812	2	537.303124	1072.5917	0.73718	0.00039609	-3.6435	-0.0019577	-2.9063	-0.0015616	537.3010391541377	32.553	0.14074	32.553	32.44	32.581	0					9	6	2	0	0	0	0.55603	1	10521	10521		39.253	0	1	65897			46456	23047	30759	30881	47047	47047					0.058303159943761784
VLFASKAGAAG	11	Unmodified	_VLFASKAGAAG_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122666276-122668222:+|nuORF;ENST00000604714.1_1_10:122667871-122668222:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2828063964844	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.051	1	38.051	37.551	38.551	0								0	0	0	0.41312	1	13617	13617		34.173	0	1				46457	3154	30760	30882	47048	47048					0.05417760305851971
VLFDAQSLFHI	11	Unmodified	_VLFDAQSLFHI_					0	0	0			REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.5673828125	3	430.567801	1288.68157	-0.45579	-0.00019625	-0.54533	-0.0002348	-1.0011	-0.00043105	430.5677664814134	28.666	0.26875	28.666	28.558	28.826	0					15	5	5	0	0	0	0.6208	1	10427	10427		35.178	0	1	377840	+		46458	12974	30761	30883	47049	47049					0.04877945602925138
VLFDKGAK	8	Unmodified	_VLFDKGAK_					0	0	0			REV__SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant	REV__SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2606201171875	2	439.260728	876.506903	-0.36591	-0.00016073	-0.36035	-0.00015829	-0.72626	-0.00031902	439.2606565570616	30.017	0.66172	30.017	29.868	30.529	0					50	14	5	0	0	0	0.59773	1	11334	11334		49.442	3.4693	1	32701000	+		46459	13820	30762	30884	47050	47050					0.06370990248422004
VLFKEFNW	8	Unmodified	_VLFKEFNW_					0	0	0			REV__ENSG00000233276|ENST00000419783|GPX1	REV__ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7850341796875	2	541.78711	1081.55967	-1.4855	-0.0008048	-0.73179	-0.00039647	-2.2172	-0.0012013	541.7866235510525	38.71	0.44065	38.71	38.577	39.017	0					57	23	4	0	0	0	0.49887	1	13811	13811		60.294	0	1	1044600	+		46460	17651	30763	30885	47051	47051					0.02214948311234366
VLFLFLPD	8	Unmodified	_VLFLFLPD_					0	0	0		ENST00000271332.3_1_1:109817672-109818002:+|nuORF	ENST00000271332.3_1_1:109817672-109818002:+|nuORF	ENST00000271332.3_1_1:109817672-109818002:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.2804260253906	2	482.281129	962.547705	0.16096	7.7629E-05	0.63598	0.00030672	0.79694	0.00038435	482.281880671897	34.631	0.16592	34.631	34.542	34.708	0					6	4	2	0	0	0	0.78146	1	12267	12267		23.037	1.0768	1	58900			46461	8379	30764	30886	47052	47052					0.06493331568037775
VLFSIKNG	8	Unmodified	_VLFSIKNG_					0	0	0			REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.26025390625	2	439.260728	876.506903	-0.56695	-0.00024904	-0.020722	-9.1023E-06	-0.58767	-0.00025814	439.2607813677691	29.956	0.61203	29.956	29.846	30.458	0					44	12	5	0	0	0	0.52345	1	11189	11189		57.811	2.3071	1	32298000	+		46462	18903	30765	30887	47053	47053					0.06370990248433372
VLFVGFLPI	9	Unmodified	_VLFVGFLPI_					0	0	0			REV__ENSG00000181752|ENST00000313447|OR8K5	REV__ENSG00000181752|ENST00000313447|OR8K5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.81378173828125	2	502.812596	1003.61064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.561	1	54.561	54.061	55.061	0								0	0	0	0.36353	1	17332	17332		21.702	0	1		+		46463	16854	30766	30888	47054	47054					0.10897897356085195
VLGCQYLH	8	Unmodified	_VLGCQYLH_					0	0	0		PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.E359Kfs*96|1|0.36|ENSG00000166851|chr16:23687502-23687502|A/-|frameshift_variant	PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant	PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.7373046875	2	466.736563	931.458573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.864	1	30.864	30.364	31.364	0								0	0	0	1.7419	1	11173	11173		37.028	0	1				46464	5937	30767	30889	47055	47055					-0.009898266631239494
VLGDINYI	8	Unmodified	_VLGDINYI_					0	0	0		tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.7519836425781	2	453.750193	905.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.189	1	38.189	37.689	38.689	0								0	0	0	1.7419	1	14995	14995		31.955	0	1				46465	22688	30768	30890	47056	47056					0.029309801489034726
VLGGAIVG	8	Unmodified	_VLGGAIVG_					0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	343.2156677246094	2	343.215789	684.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.293	1	24.293	23.793	24.793	0								0	0	0	1.7419	1	7553	7553		24.504	0	1		+		46466	14128	30769	30891	47057	47057					0.0621936063986368
VLGKVVGL	8	Unmodified	_VLGKVVGL_					0	0	0		ENST00000572067.1_1_16:67916382-67916877:+|nuORF	ENST00000572067.1_1_16:67916382-67916877:+|nuORF	ENST00000572067.1_1_16:67916382-67916877:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.7690124511719	2	392.768189	783.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.699	1	18.699	18.199	19.199	0								0	0	0	1.7419	1	4696	4696		4.6817	0	1				46467	10808	30770	30892	47058	47058					0.12140482116433304
VLGPTPVQK	9	Unmodified	_VLGPTPVQK_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.78680419921875	2	469.78711	937.559667	-0.43167	-0.00020279	-0.2397	-0.00011261	-0.67137	-0.0003154	469.7869397909917	23.497	0.22477	23.497	23.397	23.622	0					17	8	3	0	0	0	0.27249	1	6805	6805		52.937	14.131	1	263420			46468	5875	30771	30893	47059	47059					0.08838948311222339
VLGPTPVQK	9	Unmodified	_VLGPTPVQK_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7865905761719	2	469.78711	937.559667	-0.62369	-0.000293	-0.029364	-1.3795E-05	-0.65306	-0.0003068	469.78708397748585	23.826	0.33071	23.826	23.721	24.052	0					16	7	4	0	0	0	0.098791	1	7929	7929		79.713	24.208	1	1851700			46469	5875	30771	30893	47060	47060					0.08838948311222339
VLGPTPVQK	9	Unmodified	_VLGPTPVQK_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.78668212890625	2	469.78711	937.559667	-1.2342	-0.00057979	0.70136	0.00032949	-0.5328	-0.0002503	469.78734122210597	23.567	0.2222	23.567	23.454	23.676	0					21	8	3	0	0	0	0.39215	1	7083	7083		42.396	1.8235	1	534090			46470	5875	30771	30893	47061	47061					0.08838948311222339
VLGRLSYSI	9	Unmodified	_VLGRLSYSI_					0	0	0		ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.53411865234375	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.493	1	32.493	31.993	32.993	0								0	0	0	0.30835	1	12355	12355		25.574	2.0514	1				46471	7159	30772	30894	47062	47062					0.0781033333993264
VLGRLSYSI	9	Unmodified	_VLGRLSYSI_					0	0	0		ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.338	1	46.338	45.838	46.838	0								0	0	0	0.34907	1	17824	17824		25.574	10.709	1				46472	7159	30772	30894	47063	47063					0.0781033333993264
VLGVIWGV	8	Unmodified	_VLGVIWGV_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.75775146484375	2	421.760364	841.506175	-2.5631	-0.001081	-3.2105	-0.001354	-5.7736	-0.0024351	421.75891472123556	33.985	0.1865	33.985	33.878	34.065	0					10	5	2	0	0	0	0.55232	1	11977	11977		54.895	0	1	233590			46473	2090	30773	30895	47064	47064					0.07908195599372903
VLHALLENV	9	Unmodified	_VLHALLENV_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5340270996094	3	336.53432	1006.58113	-0.67419	-0.00022689	0.26529	8.9279E-05	-0.4089	-0.00013761	336.53443318962087	33.598	1.2971	33.598	33.385	34.682	0					68	53	2	0	0	0	0.61124	1	11655	11655		9.1829	0	1	63065			46474	3847	30774	30896	47065	47065					0.07810333339944009
VLHCLGIW	8	Unmodified	_VLHCLGIW_					0	0	0		SLC9A9|p.V406Cfs*92|1|0.4|ENSG00000181804|chr3:143493752-143493753|-/A|frameshift_variant	SLC9A9|p.V406Cfs*92|1|0.4|ENSG00000181804|chr3:143493752-143493753|-/A|frameshift_variant	SLC9A9|p.V406Cfs*92|1|0.4|ENSG00000181804|chr3:143493752-143493753|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	470.7584228515625	2	470.757298	939.500044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.435	1	40.435	39.935	40.935	0								0	0	0	1.7419	1	15933	15933		54.895	10.364	1				46475	22421	30775	30897	47066	47066					0.02787354096199124
VLHFGKYR	8	Unmodified	_VLHFGKYR_					0	0	0		ENST00000466047.5_1_10:121609046-121633060:-|nuORF;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	ENST00000466047.5_1_10:121609046-121633060:-|nuORF	ENST00000466047.5_1_10:121609046-121633060:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.7960510253906	2	510.292894	1018.57123	0.31066	0.00015853	3.1762	0.0016208	3.4868	0.0017793	510.2943039007212	38.649	0.17594	38.649	38.574	38.75	0					8	6	2	0	0	0	0.70055	1	15173	15173		33.516	0.70317	1	63576			46476	7497	30776	30898	47067	47067					0.06269190125226487
VLHKHQRAL	9	Unmodified	_VLHKHQRAL_					0	0	0		ENST00000480807.1_1_7:2294693-2297236:-|nuORF;ENSG00000106266|ENST00000222990|SNX8	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.8914489746094	3	367.892842	1100.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.43	1	39.43	38.93	39.93	0								0	0	0	0.35377	1	15015	15015		24.519	1.9576	1				46477	2428	30777	30899	47068	47068					0.11039355310890642
VLHRDLKPA	9	Unmodified	_VLHRDLKPA_					0	0	0		ENSG00000141639|ENST00000400384|MAPK4;MAPK6|p.P206*|1|0.03|ENSG00000069956|chr15:52050053-52050054|CC/-|frameshift_variant;ENSG00000069956|ENST00000261845|MAPK6;CDK19|p.W146R|1|0.31|ENSG00000155111|chr6:110667454-110667454|A/G|missense_variant;nc|ENSG00000117650|P51955-3|NEK2;CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant;nc|ENSG00000117650|P51955-2|NEK2;ENSG00000117650|ENST00000366999|NEK2;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;nc|ENSG00000117650|P51955-4|NEK2;nc|ENSG00000155111|Q9BWU1-2|CDK19;ENSG00000155111|ENST00000368911|CDK19	ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000117650|P51955-4|NEK2;nc|ENSG00000155111|Q9BWU1-2|CDK19	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8169555664062	2	524.816733	1047.61891	0.11569	6.0717E-05	0.42976	0.00022555	0.54546	0.00028626	524.8169327087429	18.335	0.16943	18.335	18.224	18.394	0					9	3	3	0	0	0	0.04067	1	5620	5620		82.241	5.4664	1	973210			46478	4462;11496;5118	30778	30900	47069	47069					0.09700844325402613
VLIDSAIGK	9	Unmodified	_VLIDSAIGK_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ALG8|p.V512G|1|0.34|ENSG00000159063|chr11:78101010-78101010|A/C|missense_variant	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.27880859375	2	458.279118	914.543683	-0.15599	-7.1487E-05	0.026487	1.2138E-05	-0.1295	-5.9349E-05	458.2789677232724	33.457	0.14982	33.457	33.358	33.508	0					5	3	2	0	0	0	0.41113	1	12797	12797		40.778	0	1	48975			46479	5295	30779	30901	47070	47070					0.08299242074338053
VLIEEGET	8	Unmodified	_VLIEEGET_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.2303466796875	2	445.22929	888.444028	-0.29483	-0.00013127	0.30607	0.00013627	0.011247	5.0076E-06	445.2295870030775	26.21	0.1244	26.21	26.13	26.254	0					6	4	2	0	0	0	0.70055	1	7935	7935		33.516	0	1	37560	+		46480	17396	30780	30902	47071	47071					-0.004656203302715767
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.28466796875	2	479.2844	956.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.108	1	50.108	49.608	50.608	0								0	0	0	0.22075	1	18082	18082		47.96	13.787	1				46481	6592	30781	30903	47072	47072					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2835388183594	2	479.2844	956.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.067	1	50.067	49.567	50.567	0								0	0	0	0.14881	1	18827	18827		60.118	3.3972	1				46482	6592	30781	30903	47073	47073					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2846984863281	2	479.2844	956.554247	-0.66185	-0.00031722	1.0758	0.0005156	0.41391	0.00019838	479.28480564457203	50.021	0.1074	50.021	49.972	50.08	0					9	5	2	0	0	0	0.27249	1	19765	19765		52.937	10.541	1	114930			46483	6592	30781	30903	47074	47074					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2843322753906	2	479.2844	956.554247	0.90399	0.00043327	-1.3094	-0.00062759	-0.40544	-0.00019432	479.2837514973895	50.03	0.25537	50.03	49.942	50.197	0					22	12	3	0	0	0	0.0049871	1	19757	19757		158.07	58.7	1	269530			46484	6592	30781	30903	47075	47075					0.0742322472875685
VLIERPIS	8	Unmodified	_VLIERPIS_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.786865234375	2	463.78711	925.559667	-0.70005	-0.00032468	-0.91228	-0.0004231	-1.6123	-0.00074778	463.7872818622704	30.776	0.44611	30.776	30.553	30.999	0					23	10	3	0	0	0	0.72381	1	11169	11169		30.504	2.6214	1	313010	+		46485	13514	30782	30904	47076	47076					0.09390948311227021
VLIFIFPAH	9	Unmodified	_VLIFIFPAH_					0	0	0			REV__nc|ENSG00000179846|Q17RQ9|NKPD1	REV__nc|ENSG00000179846|Q17RQ9|NKPD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.8802185058594	3	352.879539	1055.61679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.068	1	17.068	16.568	17.568	0								0	0	0	0.3269	1	4180	4180		21.96	0	1		+		46486	16790	30783	30905	47077	47077					0.09120415587608477
VLIGSSHIL	9	Unmodified	_VLIGSSHIL_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000601061.1_1_19:7712126-7712693:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.78656005859375	2	469.78711	937.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.911	1	36.911	36.411	37.411	0								0	0	0	0.20652	1	13213	13213		50.025	9.4519	1				46487	1571	30784	30906	47078	47078					0.08838948311222339
VLIGSSHIL	9	Unmodified	_VLIGSSHIL_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000601061.1_1_19:7712126-7712693:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7868347167969	2	469.78711	937.559667	0.53153	0.00024971	-1.5595	-0.00073261	-1.0279	-0.00048291	469.7864013390353	37.06	0.40316	37.06	36.963	37.366	0					15	8	3	0	0	0	0.16524	1	14465	14465		65.803	0	1	629290			46488	1571	30784	30906	47079	47079					0.08838948311222339
VLIHGHNTN	9	Unmodified	_VLIHGHNTN_					0	0	0			REV__nc|ENSG00000105220|P06744-2|GPI	REV__nc|ENSG00000105220|P06744-2|GPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7666015625	2	502.76724	1003.51993	-0.068384	-3.4381E-05	-0.27215	-0.00013683	-0.34054	-0.00017121	502.76675514844527	37.067	0.42853	37.067	36.93	37.358	0					26	12	3	0	0	0	0.25716	1	14012	14012		54.776	1.4249	1	689500	+	+	46489	20961	30785	30907	47080	47080					0.0183082136052235
VLIKGKRQT	9	Unmodified	_VLIKGKRQT_					0	0	0		nc|ENSG00000119397|Q7Z7A1-3|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-4|CNTRL	nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-3|CNTRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.2306213378906	3	348.229231	1041.66586	3.0337	0.0010564	0.87964	0.00030632	3.9133	0.0013627	348.22946498870897	37.877	0.43153	37.877	37.725	38.156	0					21	9	4	0	0	0	0.35021	1	14833	14833		45.972	13.16	1	940260			46490	3109	30786	30908	47081	47081					0.14669703876575113
VLIPPHARI	9	Unmodified	_VLIPPHARI_					0	0	0		GSK3B|p.I376V|1|0.21|ENSG00000082701|chr3:119843324-119843324|T/C|missense_variant	GSK3B|p.I376V|1|0.21|ENSG00000082701|chr3:119843324-119843324|T/C|missense_variant	GSK3B|p.I376V|1|0.21|ENSG00000082701|chr3:119843324-119843324|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.3240051269531	2	508.324194	1014.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.199	1	41.199	40.699	41.699	0								0	0	0	0.29985	1	16203	16203		35.201	5.3592	1				46491	11173	30787	30909	47082	47082					0.12710336193401872
VLIRRGSMEV	10	Unmodified	_VLIRRGSMEV_					0	0	0		ENSG00000121895|ENST00000381938|TMEM156	ENSG00000121895|ENST00000381938|TMEM156	ENSG00000121895|ENST00000381938|TMEM156	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.33544921875	2	580.334433	1158.65431	-0.37456	-0.00021737	1.3527	0.00078501	0.97812	0.00056764	580.3351528068475	43.88	0.21755	43.88	43.808	44.026	0					17	10	2	0	0	0	0.60076	1	17130	17130		34.173	6.2903	1	111920			46492	3239	30788	30910	47083	47083					0.08133138790913108
VLISEAQAI	9	Unmodified	_VLISEAQAI_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.27691650390625	2	472.276575	942.538597	-0.54218	-0.00025606	-0.020756	-9.8026E-06	-0.56294	-0.00026586	472.27653338057013	36.358	0.23121	36.358	36.273	36.505	0					23	10	3	0	0	0	0.2873	1	13000	13000		51.335	1.7994	1	172530			46493	7426	30789	30911	47084	47084					0.06502938211713172
VLKAIMPDY	9	Unmodified	_VLKAIMPDY_					0	0	0			REV__ENSG00000078070|ENST00000265594|MCCC1	REV__ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.7866821289062	2	525.288628	1048.5627	-1.2438	-0.00065333	-0.71193	-0.00037397	-1.9557	-0.0010273	525.2890468254963	40.433	0.51134	40.433	40.268	40.779	0					50	28	3	0	0	0	0.5879	1	14343	14343		23.042	0	1	466120	+		46494	13269	30790	30912	47085	47085					0.04036455373716308
VLKGTSNK	8	Unmodified	_VLKGTSNK_					0	0	0			REV__PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant	REV__PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.7556457519531	2	423.75581	845.497067	-0.21218	-8.9911E-05	-0.26018	-0.00011025	-0.47236	-0.00020016	423.7556868456629	17.916	0.089474	17.916	17.868	17.958	0					6	2	3	0	0	0	0.44433	1	4374	4374		65.803	5.5092	1	278850	+		46495	17054	30791	30913	47086	47086					0.06813802243038936
VLKLYRQK	8	Unmodified	_VLKLYRQK_					0	0	0			REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.8935241699219	3	349.89396	1046.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.35	1	33.35	32.85	33.85	0								0	0	0	1.7419	1	10835	10835		24.203	0	1		+		46496	14528	30792	30914	47087	47087					0.1385860536488508
VLKQQLSLT	9	Unmodified	_VLKQQLSLT_					0	0	0		ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.8815002441406	3	343.881608	1028.623	-0.03104	-1.0674E-05	-0.33357	-0.00011471	-0.36461	-0.00012538	343.88150852962315	26.06	0.21833	26.06	25.949	26.168	0					12	4	4	0	0	0	0.51817	1	9169	9169		37.812	0	1	1102700			46497	2329	30793	30915	47088	47088					0.1098288902846889
VLKRPRHV	8	Unmodified	_VLKRPRHV_					0	0	0		ENST00000554849.1_1_14:21464355-21465046:+|nuORF;ENST00000555640.6_1_14:21464355-21465039:+|nuORF;nc|ENSG00000165792|Q9H7H0-2|METTL17;ENSG00000165792|ENST00000339374|METTL17;nc|ENSG00000165792|Q9H7H0-3|METTL17	ENST00000554849.1_1_14:21464355-21465046:+|nuORF	ENST00000554849.1_1_14:21464355-21465046:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.82891845703125	2	502.827435	1003.64032	2.9276	0.0014721	-0.3581	-0.00018006	2.5695	0.001292	502.8271943433308	38.19	1.7309	38.19	36.846	38.577	0					80	36	3	0	0	0	0.65276	1	14923	14923		40.573	40.573	1	804710			46498	5828	30794	30916	47089	47089					0.13864274144793853
VLKTSAGLGLS	11	Unmodified	_VLKTSAGLGLS_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;ENST00000513490.1_1_5:32100951-32108238:+|nuORF;ENST00000515115.5_1_5:32098703-32108238:+|nuORF	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.31640625	2	523.316232	1044.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.932	1	17.932	17.432	18.432	0								0	0	0	0.18035	1	4376	4376		65.465	12.114	1				46499	3854	30795	30917	47090	47090					0.09738585165860059
VLKVLSSLK	9	Unmodified	_VLKVLSSLK_					0	0	0		DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.83416748046875	2	493.83406	985.653567	-0.068673	-3.3913E-05	-0.10404	-5.1378E-05	-0.17271	-8.5291E-05	493.8340648886406	27.638	0.16058	27.638	27.557	27.718	0					12	5	3	0	0	0	0.19605	1	8535	8535		62.107	14.45	1	315480			46500	787	30796	30918	47091	47091					0.16016667413509822
VLKVLSSLK	9	Unmodified	_VLKVLSSLK_					0	0	0		DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.8338623046875	2	493.83406	985.653567	-0.47168	-0.00023293	0.096096	4.7456E-05	-0.37559	-0.00018548	493.8340708826674	27.921	0.29932	27.921	27.822	28.121	0					17	7	4	0	0	0	0.15163	1	9816	9816		67.494	17.958	1	1437200			46501	787	30796	30918	47092	47092					0.16016667413509822
VLKVLSSLK	9	Unmodified	_VLKVLSSLK_					0	0	0		DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.83380126953125	2	493.83406	985.653567	-1.2693	-0.00062684	1.315	0.00064937	0.045622	2.253E-05	493.8345375595117	27.679	0.21563	27.679	27.585	27.8	0					14	7	3	0	0	0	0.24095	1	8853	8853		56.721	8.7615	1	244460			46502	787	30796	30918	47093	47093					0.16016667413509822
VLKVLSSLK	9	Unmodified	_VLKVLSSLK_					0	0	0		DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.834228515625	2	493.83406	985.653567	-1.5984	-0.00078934	1.6926	0.00083587	0.094219	4.6528E-05	493.8348732759104	27.672	0.15992	27.672	27.602	27.762	0					11	5	3	0	0	0	0.4966	1	8835	8835		32.812	0	1	167920			46503	787	30796	30918	47094	47094					0.16016667413509822
VLKVLSSLK	9	Unmodified	_VLKVLSSLK_					0	0	0		DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.833740234375	2	493.83406	985.653567	-0.74995	-0.00037035	0.49376	0.00024383	-0.25619	-0.00012652	493.83427880021287	27.889	0.21462	27.889	27.781	27.996	0					13	4	4	0	0	0	0.30841	1	10164	10164		49.536	10.283	1	602080			46504	787	30796	30918	47095	47095					0.16016667413509822
VLLAATSPRR	10	Unmodified	_VLLAATSPRR_					0	0	0		ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.8927917480469	3	361.892619	1082.65603	0.48887	0.00017692	-0.1708	-6.1811E-05	0.31806	0.00011511	361.89241670615576	18.89	0.59017	18.89	18.377	18.967	0					20	12	2	0	0	0	0.63224	1	5854	5854		30.318	3.6248	1	609350			46505	9558	30797	30919	47096	47096					0.1180051587118669
VLLCGWWL	8	Unmodified	_VLLCGWWL_					0	0	0			REV__ENDOD1|p.F482Lfs*71|1|0.3|ENSG00000149218|chr11:95129518-95129518|T/-|frameshift_variant	REV__ENDOD1|p.F482Lfs*71|1|0.3|ENSG00000149218|chr11:95129518-95129518|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2670593261719	2	495.267499	988.520445	-2.4403	-0.0012086	1.6889	0.00083645	-0.75143	-0.00037216	495.26842518802863	30.327	0.37801	30.327	30.243	30.621	0					14	9	3	0	0	0	0.55232	1	10299	10299		54.895	5.453	1	556300	+		46506	12801	30798	30920	47097	47097					0.02572524755998984
VLLDLLPNA	9	Unmodified	_VLLDLLPNA_					0	0	0			REV__ENST00000583043.5_1_18:67684852-67806940:-|nuORF	REV__ENST00000583043.5_1_18:67684852-67806940:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	484.2935485839844	2	484.294768	966.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.576	1	27.576	27.076	28.076	0								0	0	0	0.3304	1	8801	8801		29.15	0.89528	1		+		46507	16649	30799	30921	47098	47098					0.09035815108416045
VLLDSLSIN	9	Unmodified	_VLLDSLSIN_					0	0	0			REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2817077636719	2	487.281857	972.549162	-0.083177	-4.0531E-05	2.0371	0.00099262	1.9539	0.00095209	487.28284320975587	30.609	0.23483	30.609	30.563	30.798	0					11	5	3	0	0	0	0.35021	1	11471	11471		45.972	3.108	1	484330	+		46508	13045	30800	30922	47099	47099					0.0617892086613665
VLLGHRNW	8	Unmodified	_VLLGHRNW_					0	0	0			REV__chr20:35280829-35284184|119|13.38|0.55|4.6|-|2|EIF6,None|1	REV__chr20:35280829-35284184|119|13.38|0.55|4.6|-|2|EIF6,None|1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.7820739746094	2	497.782693	993.550834	-0.056241	-2.7996E-05	-1.5624	-0.00077772	-1.6186	-0.00080572	497.78201914741743	23.202	0.43305	23.202	22.938	23.372	0					17	13	2	0	0	0	0.67475	1	6689	6689		37.028	5.0736	1	107180	+		46509	12484	30801	30923	47100	47100					0.05380019465417263
VLLGSVSGLA	10	Unmodified	_VLLGSVSGLA_					0	0	0		ENST00000574129.5_1_17:79680521-79687104:+|nuORF;ENSG00000183048|ENST00000350690|SLC25A10;nc|ENSG00000183048|Q9UBX3-2|SLC25A10	ENST00000574129.5_1_17:79680521-79687104:+|nuORF	ENST00000574129.5_1_17:79680521-79687104:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2789001464844	2	458.279118	914.543683	-0.43929	-0.00020132	-0.033991	-1.5577E-05	-0.47328	-0.0002169	458.2791034333394	33.407	0.11825	33.407	33.348	33.466	0					4	2	2	0	0	0	0.57532	1	12709	12709		37.159	1.5408	1	139700			46510	6937	30802	30924	47101	47101					0.08299242074326685
VLLHDKVL	8	Unmodified	_VLLHDKVL_					0	0	0			REV__ENST00000270861.9_1_4:128802164-128803079:+|nuORF	REV__ENST00000270861.9_1_4:128802164-128803079:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.79766845703125	2	468.797478	935.580402	-0.63631	-0.0002983	0.50753	0.00023793	-0.12879	-6.0376E-05	468.7977567772825	36.726	0.31556	36.726	36.625	36.941	0					18	8	3	0	0	0	0.65276	1	13870	13870		40.573	7.057	1	250120	+		46511	18100	30803	30925	47102	47102					0.11003538690886217
VLLLPMPM	8	Unmodified	_VLLLPMPM_					0	0	0		ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.26416015625	2	457.26611	912.517667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.837	1	45.837	45.337	46.337	0								0	0	0	1.7419	1	14718	14718		16.705	2.0409	1				46512	7168	30804	30926	47103	47103					0.05790933306843726
VLLMPARSA	9	Unmodified	_VLLMPARSA_					0	0	0			REV__ENSG00000162040|ENST00000454677|HS3ST6	REV__ENSG00000162040|ENST00000454677|HS3ST6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.27642822265625	2	479.281137	956.547722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.427	1	48.427	47.927	48.927	0								0	0	0	0.3428	1	16082	16082		26.693	4.733	1		+		46513	15797	30805	30927	47104	47104					0.06771008296391301
VLLPAPRAPGR	11	Unmodified	_VLLPAPRAPGR_					0	0	0		ENST00000274203.13_1_5:16936005-16936380:-|nuORF	ENST00000274203.13_1_5:16936005-16936380:-|nuORF	ENST00000274203.13_1_5:16936005-16936380:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8591918945312	2	573.858932	1145.70331	-0.11767	-6.7529E-05	0.63213	0.00036276	0.51446	0.00029523	573.8593549654865	22.846	0.33754	22.846	22.756	23.093	0					17	8	3	0	0	0	0.65907	1	7509	7509		31.53	5.9558	1	551390			46514	8394	30806	30928	47105	47105					0.13628795142176386
VLLPFVGSL	9	Unmodified	_VLLPFVGSL_					0	0	0			REV__SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	REV__SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7959899902344	2	472.794404	943.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.095	1	33.095	32.595	33.595	0								0	0	0	0.34228	1	12638	12638		26.796	1.3459	1		+		46515	16076	30807	30929	47106	47106					0.10021020459385
VLLSGVLVGI	10	Unmodified	_VLLSGVLVGI_					0	0	0			REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.3211364746094	2	485.320786	968.627018	-0.56767	-0.0002755	0.50162	0.00024345	-0.066049	-3.2055E-05	485.3210054590549	42.392	0.3913	42.392	42.181	42.573	0					23	10	3	0	0	0	0.42631	1	16889	16889		53.351	0	1	490260	+		46516	19616	30808	30930	47107	47107					0.1414497852219938
VLLVCVCLQ	9	Unmodified	_VLLVCVCLQ_					0	0	0			REV__ENSG00000184601|ENST00000557649|C14orf180	REV__ENSG00000184601|ENST00000557649|C14orf180	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.2790832519531	2	495.279749	988.544945	2.8353	0.0014043	-2.7931	-0.0013834	0.042135	2.0868E-05	495.2776340594116	31.594	0.31436	31.594	31.437	31.751	0					14	6	3	0	0	0	0.21116	1	11839	11839		60.294	0.36318	1	773280	+		46517	16990	30809	30931	47108	47108					0.05021416847216642
VLLVNDVHV	9	Unmodified	_VLLVNDVHV_					0	0	0		TMEM74|p.V244Rfs*45|1|0.24|ENSG00000164841|chr8:108784370-108784371|-/C|frameshift_variant	TMEM74|p.V244Rfs*45|1|0.24|ENSG00000164841|chr8:108784370-108784371|-/C|frameshift_variant	TMEM74|p.V244Rfs*45|1|0.24|ENSG00000164841|chr8:108784370-108784371|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.934	1	32.934	32.434	33.434	0								0	0	0	0.36766	1	12559	12559		14.865	0	1				46518	22547	30810	30932	47109	47109					0.07810333339944009
VLMACLKQ	8	Unmodified	_VLMACLKQ_					0	0	0			REV__ENSG00000205029|ENST00000378396|OR5D16	REV__ENSG00000205029|ENST00000378396|OR5D16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2505798339844	2	453.250991	904.48743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.306	1	15.306	14.806	15.806	0								0	0	0	1.7419	1	3403	3403		20.482	1.1219	1		+		46519	17509	30811	30933	47110	47110					0.03136574641655443
VLMGTRKGLL	10	Unmodified	_VLMGTRKGLL_					0	0	0			REV__ENST00000475124.1_1_3:53892285-53892672:+|nuORF	REV__ENST00000475124.1_1_3:53892285-53892672:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	363.22662353515625	3	363.226722	1086.65834	1.1194	0.0004066	-1.2327	-0.00044775	-0.1133	-4.1152E-05	363.22623719705837	30.569	0.30632	30.569	30.474	30.78	0					11	6	2	0	0	0	0.69544	1	11346	11346		22.58	0	1	411210	+		46520	19526	30812	30934	47111	47111					0.11847228284636913
VLMKFSTN	8	Unmodified	_VLMKFSTN_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	470.2510986328125	2	470.252046	938.489538	-1.2657	-0.00059521	-1.8277	-0.00085949	-3.0935	-0.0014547	470.25104550063327	36.98	0.19402	36.98	36.904	37.098	0					16	10	2	0	0	0	0.7126	1	12513	12513		31.955	1.4512	1	84084			46521	1312	30813	30935	47112	47112					0.01783326651104744
VLMKICLKA	9	Unmodified	_VLMKICLKA_					0	0	0		GRPR|p.A153V|1|0.4|ENSG00000126010|chrX:16150349-16150349|C/T|missense_variant	GRPR|p.A153V|1|0.4|ENSG00000126010|chrX:16150349-16150349|C/T|missense_variant	GRPR|p.A153V|1|0.4|ENSG00000126010|chrX:16150349-16150349|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.208984375	3	340.209903	1017.60788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.878	1	46.878	46.378	47.378	0								0	0	0	0.38913	1	17264	17264		14.137	0	1				46522	11171	30814	30936	47113	47113					0.09977982635246008
VLMRFLAQ	8	Unmodified	_VLMRFLAQ_					0	0	0			REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF	REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.28643798828125	2	489.28368	976.552807	-0.43113	-0.00021095	-0.47084	-0.00023037	-0.90197	-0.00044132	489.2827720157728	41.793	0.33149	41.793	41.653	41.984	0					36	16	3	0	0	0	0.66372	1	15839	15839		38.806	5.2906	1	190160	+		46523	19966	30815	30937	47114	47114					0.06359312159008823
VLNASLGR	8	Unmodified	_VLNASLGR_					0	0	0			REV__ENSG00000197181|ENST00000356766|PIWIL2	REV__ENSG00000197181|ENST00000356766|PIWIL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.2479553222656	2	415.248152	828.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.148	1	34.148	33.648	34.648	0								0	0	0	1.7419	1	11149	11149		25.45	2.4135	1		+		46524	17318	30816	30938	47115	47115					0.06064935445863284
VLNFGFSDAF	10	Unmodified	_VLNFGFSDAF_					0	0	0			REV__PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant	REV__PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7703247070312	2	558.771657	1115.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.782	1	35.782	35.282	36.282	0								0	0	0	0.40002	1	13445	13445		30.504	1.3541	1		+		46525	15568	30817	30939	47116	47116					-0.024382497936812797
VLNFSPHLPG	10	Unmodified	_VLNFSPHLPG_					0	0	0			REV__ENST00000525250.5_1_11:821680-823850:+|nuORF	REV__ENST00000525250.5_1_11:821680-823850:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7938842773438	2	540.795466	1079.57638	-1.4812	-0.00080102	-1.4124	-0.00076383	-2.8936	-0.0015649	540.7946804747074	17.95	0.15187	17.95	17.85	18.002	0					6	3	2	0	0	0	0.46128	1	4593	4593		37.159	0	1	482520	+		46526	16704	30818	30940	47117	47117					0.039774491971684256
VLNGPAAPAY	10	Unmodified	_VLNGPAAPAY_					0	0	0			REV__HAVCR2|p.T41A|1|0.45|ENSG00000135077|chr5:157106900-157106900|T/C|missense_variant	REV__HAVCR2|p.T41A|1|0.45|ENSG00000135077|chr5:157106900-157106900|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7611083984375	2	486.761092	971.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.642	1	46.642	46.142	47.142	0								0	0	0	0.37816	1	17904	17904		37.159	0	1		+		46527	20715	30819	30941	47118	47118					0.020737848974590634
VLNGPLILW	9	Unmodified	_VLNGPLILW_					0	0	0		FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant;FANCB|p.I419Tfs*9|1|0.08|ENSG00000181544|chrX:14853109-14853110|-/AG|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB	FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant	FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.8145751953125	2	512.813128	1023.6117	-0.28624	-0.00014679	2.2061	0.0011313	1.9199	0.00098453	512.8143967033084	11.674	0.10734	11.674	11.636	11.743	0					5	3	2	0	0	0	0.61124	1	2274	2274		19.36	4.6959	1	397010			46528	6855	30820	30942	47119	47119					0.10084111724984268
VLNGSVTLTVI	11	Unmodified	_VLNGSVTLTVI_					0	0	0		ENST00000599504.5_1_19:40502974-40503061:+|nuORF	ENST00000599504.5_1_19:40502974-40503061:+|nuORF	ENST00000599504.5_1_19:40502974-40503061:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.89141845703125	3	372.560535	1114.65977	3.5518	0.0013233	-4.1357	-0.0015408	-0.58385	-0.00021752	372.5585427308422	18.176	0.15737	18.176	18.037	18.195	0					8	5	2	0	0	0	0.7767	1	4670	4670		20.03	0	1	62466			46529	11024	30821	30943	47120	47120					0.10703140854366211
VLNKKNVE	8	Unmodified	_VLNKKNVE_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2822265625	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.346	1	40.346	39.846	40.846	0								0	0	0	1.7419	1	16012	16012		33.516	5.6333	1				46530	5476	30822	30944	47121	47121					0.07625760305847962
VLNLYVEDK	9	Unmodified	_VLNLYVEDK_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.8016967773438	2	546.800414	1091.58628	1.8578	0.0010158	-0.090122	-4.9279E-05	1.7677	0.00096656	546.8002935700601	36.409	0.079231	36.409	36.351	36.43	0					4	2	2	0	0	0	0.26904	1	13733	13733		53.351	2.016	1	64092	+		46531	13322	30823	30945	47122	47122					0.04414592411899321
VLNTAVDII	9	Unmodified	_VLNTAVDII_					0	0	0			REV__ENST00000307637.4_1_12:8212234-8212315:-|nuORF	REV__ENST00000307637.4_1_12:8212234-8212315:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2829895019531	2	479.2844	956.554247	-0.23686	-0.00011352	0.18519	8.876E-05	-0.051666	-2.4763E-05	479.2844326430729	42.001	0.16723	42.001	41.938	42.105	0					13	8	2	0	0	0	0.51817	1	15933	15933		30.504	0	1	137230	+		46532	18251	30824	30946	47123	47123					0.0742322472875685
VLPAFRESP	9	Unmodified	_VLPAFRESP_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.2823791503906	2	508.282192	1014.54983	-0.097552	-4.9584E-05	0.12399	6.3024E-05	0.026443	1.3441E-05	508.28225575508924	26.059	0.16486	26.059	25.972	26.137	0					8	6	2	0	0	0	0.51817	1	7878	7878		30.504	1.3541	1	49456			46533	7471	30825	30947	47124	47124					0.04313760305853975
VLPANSVTF	9	Unmodified	_VLPANSVTF_					0	0	0		nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.26300048828125	2	474.263468	946.512382	0.28288	0.00013416	-0.75859	-0.00035977	-0.47571	-0.00022561	474.2631286576483	40.567	0.26755	40.567	40.477	40.745	0					21	11	3	0	0	0	0.44593	1	15451	15451		37.812	2.1932	1	350190			46534	1525	30826	30948	47125	47125					0.036986690402500244
VLPAPVAGHQ	10	Unmodified	_VLPAPVAGHQ_					0	0	0		ENST00000361490.8_1_10:100184114-100185647:-|nuORF	ENST00000361490.8_1_10:100184114-100185647:-|nuORF	ENST00000361490.8_1_10:100184114-100185647:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	330.1906433105469	3	330.190665	987.550165	0.52548	0.00017351	-0.27558	-9.0992E-05	0.24991	8.2517E-05	330.1905215140243	17.651	1.3546	17.651	17.448	18.803	0					73	32	3	0	0	0	0.38194	1	5008	5008		58.23	16.803	1	490900			46535	8872	30827	30949	47126	47126					0.05589180025708629
VLPASVQLK	9	Unmodified	_VLPASVQLK_					0	0	0		nc|ENSG00000172955|P28332|ADH6;ENSG00000172955|ENST00000394899|ADH6	nc|ENSG00000172955|P28332|ADH6	nc|ENSG00000172955|P28332|ADH6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.80279541015625	2	477.80276	953.590967	-0.11718	-5.5988E-05	-0.25664	-0.00012262	-0.37382	-0.00017861	477.8025346471517	32.137	0.2067	32.137	32.001	32.208	0					7	4	2	0	0	0	0.39215	1	12203	12203		42.396	1.618	1	84438			46536	6399	30828	30950	47127	47127					0.11231521345337114
VLPERYSSL	9	Unmodified	_VLPERYSSL_					0	0	0		ENST00000503638.1_1_5:114588828-114598548:-|nuORF;PGGT1B|p.S241Ffs*25|1|0.36|ENSG00000164219|chr5:115221945-115221946|-/A|frameshift_variant;nc|ENSG00000164219|P53609-2|PGGT1B;ENSG00000164219|ENST00000419445|PGGT1B	ENST00000503638.1_1_5:114588828-114598548:-|nuORF	ENST00000503638.1_1_5:114588828-114598548:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2933349609375	2	532.292756	1062.57096	-0.28429	-0.00015133	0.9055	0.00048199	0.62121	0.00033066	532.2932129482142	33.541	0.2693	33.541	33.434	33.703	0					17	10	2	0	0	0	0.46194	1	11242	11242		36.447	2.2742	1	324090			46537	5670	30829	30951	47128	47128					0.04217725614716983
VLPIRSRY	8	Unmodified	_VLPIRSRY_					0	0	0			REV__ENSG00000230358|ENST00000424157|SPDYE21	REV__ENSG00000230358|ENST00000424157|SPDYE21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.304931640625	2	502.306001	1002.59745	-0.28496	-0.00014314	-1.2246	-0.00061513	-1.5096	-0.00075827	502.3053161060214	31.967	0.16691	31.967	31.897	32.064	0					6	4	2	0	0	0	0.61938	1	11077	11077		26.796	0	1	66740	+		46538	17641	30830	30952	47129	47129					0.09625459296705685
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.85986328125	2	536.860078	1071.7056	0.29255	0.00015706	1.0204	0.00054783	1.313	0.00070489	536.8604471431871	40.589	0.13319	40.589	40.484	40.617	0					10	5	2	0	0	0	0.32741	1	15979	15979		47.916	1.9636	1	126470			46539	7492	30831	30953	47130	47130					0.17261830827260383
VLPKQLPLP	9	Unmodified	_VLPKQLPLP_					0	0	0			REV__PCK1|p.N346Qfs*29|1|0.24|ENSG00000124253|chr20:57564238-57564239|-/C|frameshift_variant	REV__PCK1|p.N346Qfs*29|1|0.24|ENSG00000124253|chr20:57564238-57564239|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.8284912109375	2	502.828778	1003.643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.268	1	38.268	37.768	38.768	0								0	0	0	0.15865	1	13689	13689		57.811	7.7867	1		+		46540	14387	30832	30954	47131	47131					0.14132684759090353
VLPLEYKVI	9	Unmodified	_VLPLEYKVI_					0	0	0			REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	REV__SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.3320922851562	2	537.333893	1072.65323	-1.4245	-0.00076543	-1.4192	-0.00076257	-2.8437	-0.001528	537.3332205756299	22.549	0.28704	22.549	22.407	22.694	0					12	6	3	0	0	0	0.25109	1	6727	6727		55.504	55.504	1	324720	+		46541	14736	30833	30955	47132	47132					0.11981247693643127
VLPPQPTLPPQ	11	Unmodified	_VLPPQPTLPPQ_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.2328186035156	3	396.23253	1185.67576	0.90897	0.00036016	-0.46844	-0.00018561	0.44052	0.00017455	396.2323244562639	33.484	0.32927	33.484	33.379	33.708	0					16	8	3	0	0	0	0.33569	1	12385	12385		58.63	18.756	1	271950			46542	5777	30834	30956	47133	47133					0.09034847091288611
VLPPQPTLPPQ	11	Unmodified	_VLPPQPTLPPQ_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	396.23248291015625	3	396.23253	1185.67576	0.399	0.0001581	-0.37303	-0.00014781	0.025977	1.0293E-05	396.2324093693291	33.441	0.36746	33.441	33.332	33.7	0					18	7	3	0	0	0	0.41029	1	12727	12727		50.791	9.7112	1	535080			46543	5777	30834	30956	47134	47134					0.09034847091288611
VLPPQTIIQ	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VLPPQTIIQ_					1	0	0		YTHDF3|p.P304S|1|0.21|ENSG00000185728|chr8:63186921-63186921|C/T|missense_variant;ENSG00000185728|ENST00000539294|YTHDF3	YTHDF3|p.P304S|1|0.21|ENSG00000185728|chr8:63186921-63186921|C/T|missense_variant	YTHDF3|p.P304S|1|0.21|ENSG00000185728|chr8:63186921-63186921|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8779296875	3	350.877975	1049.6121	-0.046072	-1.6166E-05	0.10685	3.7493E-05	0.060782	2.1327E-05	350.8779382851897	34.449	0.40662	34.449	34.294	34.7	0					21	8	4	0	0	0	0.28504	1	13193	13193		51.528	6.5056	1	923560			46544	7100	30835	30957	47135	47135					0.089274866542155
VLPQCCIAY	9	Unmodified	_VLPQCCIAY_					0	0	0			REV__ENSG00000164270|ENST00000377888|HTR4	REV__ENSG00000164270|ENST00000377888|HTR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2456970214844	2	505.245906	1008.47726	0.70426	0.00035582	-1.7992	-0.00090906	-1.095	-0.00055323	505.2450007688846	31.448	0.29848	31.448	31.299	31.598	0					19	12	2	0	0	0	0.083791	1	10088	10088		83.287	25.476	1	63215	+		46545	15976	30836	30958	47136	47136					-0.0266403308360168
VLPYSKPLPS	10	Unmodified	_VLPYSKPLPS_					0	0	0		ENST00000572173.1_1_16:11389121-11410442:+|nuORF	ENST00000572173.1_1_16:11389121-11410442:+|nuORF	ENST00000572173.1_1_16:11389121-11410442:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8214111328125	2	550.82115	1099.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.96	1	39.96	39.46	40.46	0								0	0	0	0.30854	1	15225	15225		49.536	0.094497	1				46546	10811	30837	30959	47137	47137					0.08191773171233763
VLPYSKPLPS	10	Unmodified	_VLPYSKPLPS_					0	0	0		ENST00000572173.1_1_16:11389121-11410442:+|nuORF	ENST00000572173.1_1_16:11389121-11410442:+|nuORF	ENST00000572173.1_1_16:11389121-11410442:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.8216552734375	2	550.82115	1099.62775	1.816	0.0010003	-1.0916	-0.00060127	0.72437	0.000399	550.8206048779351	39.743	2.9042	39.743	39.202	42.106	0					108	67	2	0	0	0	0.50881	1	15889	15889		44.377	0.26039	1	195410			46547	10811	30837	30959	47138	47138					0.08191773171233763
VLQFEPGHI	9	Unmodified	_VLQFEPGHI_					0	0	0		nc|ENSG00000170962|Q9GZP0-2|PDGFD;ENSG00000170962|ENST00000393158|PDGFD	nc|ENSG00000170962|Q9GZP0-2|PDGFD	nc|ENSG00000170962|Q9GZP0-2|PDGFD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	347.1890869140625	3	347.190553	1038.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.555	1	16.555	16.055	17.055	0								0	0	0	0.28666	1	3790	3790		37.812	7.4938	1				46548	6271	30838	30960	47139	47139					0.032097603058673485
VLQFFSCL	8	Unmodified	_VLQFFSCL_					0	0	0		ENST00000483122.1_1_10:114209100-114209169:+|nuORF	ENST00000483122.1_1_10:114209100-114209169:+|nuORF	ENST00000483122.1_1_10:114209100-114209169:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.7498474121094	2	478.749139	955.483725	-0.031231	-1.4952E-05	2.3928	0.0011455	2.3615	0.0011306	478.7500333157469	35.985	0.17419	35.985	35.913	36.087	0					11	8	2	0	0	0	0.70055	1	11827	11827		33.516	1.5607	1	58436			46549	9975	30839	30961	47140	47140					0.004202281394441343
VLQLTAALLAH	11	Unmodified	_VLQLTAALLAH_					0	0	0			REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.904541015625	3	383.904524	1148.69174	0.2921	0.00011214	-0.35719	-0.00013713	-0.065094	-2.499E-05	383.90442617450117	19.272	1.1159	19.272	19.164	20.28	0					62	22	5	0	0	0	0.5473	1	6072	6072		66.962	19.002	1	20182000	+		46550	20964	30840	30962	47141	47141					0.1233455332817357
VLQMIGKA	8	Unmodified	_VLQMIGKA_					0	0	0			REV__ENST00000461514.6_1_1:1248044-1249114:-|nuORF	REV__ENST00000461514.6_1_1:1248044-1249114:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2552795410156	2	430.257131	858.499709	-0.50401	-0.00021685	-4.3081	-0.0018536	-4.8121	-0.0020704	430.25544712318003	30.017	0.15998	30.017	29.916	30.076	0					5	3	2	0	0	0	0.68754	1	11189	11189		35.201	1.0282	1	155450	+		46551	14479	30841	30963	47142	47142					0.06479934376352503
VLQNHLTEVL	10	Unmodified	_VLQNHLTEVL_					0	0	0		H6PD|p.D262N|1|0.33|ENSG00000049239|chr1:9262097-9262097|G/A|missense_variant;ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	H6PD|p.D262N|1|0.33|ENSG00000049239|chr1:9262097-9262097|G/A|missense_variant	H6PD|p.D262N|1|0.33|ENSG00000049239|chr1:9262097-9262097|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	583.3306274414062	2	583.332413	1164.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.543	1	17.543	17.043	18.043	0								0	0	0	0.23484	1	4394	4394		31.53	10.583	1				46552	1237	30842	30964	47143	47143					0.07453372568852501
VLQQYIQI	8	Unmodified	_VLQQYIQI_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7919616699219	2	502.792392	1003.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.672	1	38.672	38.172	39.172	0								0	0	0	1.7419	1	14699	14699		68.485	18.949	1		+		46553	17341	30843	30965	47144	47144					0.06858930965665877
VLQQYIQI	8	Unmodified	_VLQQYIQI_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7921447753906	2	502.792392	1003.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.594	1	38.594	38.094	39.094	0								0	0	0	1.7419	1	15187	15187		76.847	4.9692	1		+		46554	17341	30843	30965	47145	47145					0.06858930965665877
VLRALARRP	9	Unmodified	_VLRALARRP_					0	0	0			REV__ENST00000447184.5_1_1:45984722-45987591:-|nuORF	REV__ENST00000447184.5_1_1:45984722-45987591:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	351.2330017089844	3	351.233087	1050.67743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.356	1	28.356	27.856	28.856	0								0	0	0	0.38913	1	9401	9401		14.137	0	1		+		46555	19285	30844	30966	47146	47146					0.15411945690516404
VLRHGYHL	8	Unmodified	_VLRHGYHL_					0	0	0		SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7818908691406	2	497.782693	993.550834	-2.2591	-0.0011246	0.3037	0.00015118	-1.9554	-0.00097339	497.7828429242267	23.347	1.0605	23.347	22.454	23.514	0					42	24	4	0	0	0	0.67475	1	6994	6994		37.028	37.028	1	439950			46556	7539	30845	30967	47147	47147					0.05380019465417263
VLRHLASL	8	Unmodified	_VLRHLASL_					0	0	0			REV__ENST00000461149.1_1_9:35078119-35078602:-|nuORF	REV__ENST00000461149.1_1_9:35078119-35078602:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.7869567871094	2	454.787444	907.560336	-1.145	-0.00052074	0.33903	0.00015419	-0.80598	-0.00036655	454.7875951509237	27.897	0.34961	27.897	27.643	27.992	0					20	12	2	0	0	0	0.8006	1	8883	8883		20.482	0	1	59642	+		46557	17609	30846	30968	47148	47148					0.1028578775093365
VLRHQTSWV	9	Unmodified	_VLRHQTSWV_					0	0	0			REV__ENST00000563188.5_1_16:23672513-23672600:+|nuORF	REV__ENST00000563188.5_1_16:23672513-23672600:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	375.876708984375	3	375.876969	1124.60908	0.80089	0.00030104	-1.6187	-0.00060843	-0.8178	-0.00030739	375.87638602622445	28.81	0.21038	28.81	28.73	28.94	0					8	5	2	0	0	0	0.56424	1	10237	10237		25.574	1.3422	1	114330	+		46558	20316	30847	30969	47149	47149					0.051756563200115124
VLRKLEGPK	9	Unmodified	_VLRKLEGPK_					0	0	0			REV__ENSG00000204599|ENST00000396551|TRIM39	REV__ENSG00000204599|ENST00000396551|TRIM39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.8367309570312	2	520.334759	1038.65496	1.1061	0.00057554	0.36235	0.00018854	1.4684	0.00076408	520.3350888502705	11.402	0.10735	11.402	11.346	11.453	0					6	3	2	0	0	0	0.36892	1	2322	2322		29.15	0	1	69017	+		46559	17491	30848	30970	47150	47150					0.13718301502262875
VLRKLEGPK	9	Unmodified	_VLRKLEGPK_					0	0	0			REV__ENSG00000204599|ENST00000396551|TRIM39	REV__ENSG00000204599|ENST00000396551|TRIM39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.33544921875	2	520.334759	1038.65496	1.6229	0.00084444	-0.0013037	-6.7836E-07	1.6216	0.00084376	520.3347159002051	11.364	0.076818	11.364	11.303	11.38	0					7	4	2	0	0	0	0.38666	1	2198	2198		44.117	13.613	1	69397	+		46560	17491	30848	30970	47151	47151					0.13718301502262875
VLRSHGITI	9	Unmodified	_VLRSHGITI_					0	0	0			REV__ENST00000469471.1_1_3:39144861-39149032:-|nuORF	REV__ENST00000469471.1_1_3:39144861-39149032:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.53802490234375	3	332.538064	994.592364	0.52207	0.00017361	-0.6544	-0.00021761	-0.13234	-4.4007E-05	332.5378233233299	20.928	0.62185	20.928	20.642	21.264	0					32	14	5	0	0	0	0.55379	1	6540	6540		26.693	0	1	1340500	+		46561	19455	30849	30971	47152	47152					0.09485155434083481
VLRWFDGVT	9	Unmodified	_VLRWFDGVT_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7933959960938	2	546.795466	1091.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.509	1	25.509	25.009	26.009	0								0	0	0	0.36609	1	7942	7942		20.947	0.95016	1		+		46562	13290	30850	30972	47153	47153					0.034254491971978496
VLSACTILVL	10	Carbamidomethyl (C)	_VLSAC(Carbamidomethyl (C))TILVL_	VLSAC(1)TILVL		VLSAC(44)TILVL		0	1	0			REV__ENSG00000121270|ENST00000356608|ABCC11	REV__ENSG00000121270|ENST00000356608|ABCC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8225708007812	2	544.822835	1087.63112	1.8709	0.0010193	-3.1042	-0.0016912	-1.2333	-0.00067194	544.8210919691779	43.84	0.15089	43.84	43.798	43.949	0					14	8	2	0	0	0	0.51121	1	16498	16498		44.117	6.3053	1	74733	+		46563	14307	30851	30973	47154	47154	532				0.09080699953574367
VLSDINLKK	9	Unmodified	_VLSDINLKK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.3187255859375	2	515.318774	1028.623	0.029173	1.5033E-05	-0.22436	-0.00011562	-0.19518	-0.00010058	515.3187390278401	26.12	0.17369	26.12	26.031	26.204	0					10	4	3	0	0	0	0.30841	1	8979	8979		49.536	5.1589	1	777930			46564	6454	30852	30974	47155	47155					0.10982889028446152
VLSDVNQRL	9	Unmodified	_VLSDVNQRL_					0	0	0			REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2962036132812	2	522.29583	1042.57711	0.084369	4.4065E-05	1.3791	0.0007203	1.4635	0.00076437	522.2959994063585	16.306	0.22685	16.306	16.18	16.407	0					16	5	4	0	0	0	0.087861	1	4406	4406		82.241	7.1972	1	441510	+		46565	22166	30853	30975	47156	47156					0.057522438462456194
VLSESVQVEK	10	Unmodified	_VLSESVQVEK_					0	0	0		PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;ENSG00000118898|ENST00000345988|PPL	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20977783203125	3	373.208161	1116.60265	3.2233	0.0012029	0.78366	0.00029247	4.0069	0.0014954	373.2086851413715	22.261	5.8436	22.261	21.953	27.797	0					242	115	5	0	0	0	0.61187	1	8115	8115		30.569	0	1	47596000			46566	3086	30854	30976	47157	47157					0.04901673578001464
VLSFPNKKFFW	11	Unmodified	_VLSFPNKKFFW_					0	0	0			REV__ENST00000504733.1_1_3:130546621-130547209:+|nuORF	REV__ENST00000504733.1_1_3:130546621-130547209:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	706.8904418945312	2	706.889898	1411.76524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.364	1	37.364	36.864	37.864	0								0	0	0	0.45674	1	14611	14611		17.468	3.3309	1		+		46567	19829	30855	30977	47158	47158					0.07583101770637768
VLSGPGPLELQ	11	Unmodified	_VLSGPGPLELQ_					0	0	0		ENST00000216124.9_1_22:51065986-51066424:-|nuORF;ENST00000395621.7_1_22:51065986-51066424:-|nuORF	ENST00000216124.9_1_22:51065986-51066424:-|nuORF	ENST00000216124.9_1_22:51065986-51066424:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.5452575683594	3	370.544885	1108.61282	0.8364	0.00030992	-0.47946	-0.00017766	0.35693	0.00013226	370.54485634265734	33.593	0.21629	33.593	33.483	33.7	0					15	4	4	0	0	0	0.64562	1	12795	12795		35.178	0	1	798110			46568	8159	30856	30978	47159	47159					0.062862813032325
VLSGRALKQLE	11	Unmodified	_VLSGRALKQLE_					0	0	0			REV__nc|ENSG00000048828|Q9NZB2-5|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-5|FAM120A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	607.3674926757812	2	607.366787	1212.71902	0.15342	9.3182E-05	0.71355	0.00043339	0.86697	0.00052657	607.3671891278478	17.521	0.12791	17.521	17.462	17.59	0					7	4	2	0	0	0	0.60545	1	4198	4198		27.047	2.5281	1	68264	+		46569	13023	30857	30979	47160	47160					0.12117036868517062
VLSHNKLTV	9	Unmodified	_VLSHNKLTV_					0	0	0		ENST00000412878.2_1_10:53079678-53079921:+|nuORF	ENST00000412878.2_1_10:53079678-53079921:+|nuORF	ENST00000412878.2_1_10:53079678-53079921:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.8055114746094	2	505.803291	1009.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.96	1	38.96	38.46	39.46	0								0	0	0	0.27025	1	14817	14817		40.778	7.9657	1				46570	9324	30858	30980	47161	47161					0.08761735714210772
VLSKASLTFT	10	Unmodified	_VLSKASLTFT_					0	0	0		INPP1|p.G281Vfs*45|1|0.04|ENSG00000151689|chr2:190371034-190371035|-/GT|frameshift_variant	INPP1|p.G281Vfs*45|1|0.04|ENSG00000151689|chr2:190371034-190371035|-/GT|frameshift_variant	INPP1|p.G281Vfs*45|1|0.04|ENSG00000151689|chr2:190371034-190371035|-/GT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.8125	2	533.810782	1065.60701	1.1181	0.00059688	1.6211	0.00086539	2.7393	0.0014623	533.8117003999432	30.623	0.23128	30.623	30.543	30.775	0					11	6	3	0	0	0	0.50881	1	10446	10446		44.377	1.9027	1	301700			46571	11224	30859	30981	47162	47162					0.07683182791561194
VLSLGLAGAL	10	Unmodified	_VLSLGLAGAL_					0	0	0			REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.28912353515625	2	457.289485	912.564418	-0.43527	-0.00019905	-0.029391	-1.344E-05	-0.46466	-0.00021249	457.2894415292177	36.948	0.95451	36.948	36.233	37.187	0					45	19	3	0	0	0	0.60076	1	14127	14127		34.173	5.023	1	580910	+		46572	13403	30860	30982	47163	47163					0.10463832453979194
VLSLPHWL	8	Unmodified	_VLSLPHWL_					0	0	0			REV__ENST00000391834.6_1_19:50372434-50372704:-|nuORF	REV__ENST00000391834.6_1_19:50372434-50372704:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	322.1933288574219	3	322.192006	963.554188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.745	1	36.745	36.245	37.245	0								0	0	0	1.7419	1	13883	13883		6.7355	0	1		+		46573	18814	30861	30983	47164	47164					0.07095269519413705
VLSRARKR	8	Unmodified	_VLSRARKR_					0	0	0		ENST00000583087.5_1_3:123339167-123339366:-|nuORF	ENST00000583087.5_1_3:123339167-123339366:-|nuORF	ENST00000583087.5_1_3:123339167-123339366:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.2183532714844	3	329.217437	984.630481	3.0026	0.0009885	-0.47967	-0.00015792	2.5229	0.00083059	329.21728207514303	33.725	2.6003	33.725	33.566	36.166	0					99	53	2	0	0	0	0.70055	1	13060	13060		35.618	6.4687	1	78262000			46574	10879	30862	30984	47165	47165					0.13755086139406103
VLSSGARVLV	10	Unmodified	_VLSSGARVLV_					0	0	0		ENSG00000083807|ENST00000263093|SLC27A5	ENSG00000083807|ENST00000263093|SLC27A5	ENSG00000083807|ENST00000263093|SLC27A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.2095642089844	3	334.209836	999.60768	-0.038529	-1.2877E-05	-0.62329	-0.00020831	-0.66182	-0.00022119	334.2097594040587	19.389	0.18801	19.389	19.274	19.463	0					6	4	2	0	0	0	0.73274	1	5281	5281		21.686	10.05	1	58168			46575	1701	30863	30985	47166	47166					0.10786022231275183
VLSSHVLLK	9	Unmodified	_VLSSHVLLK_					0	0	0			REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.3158874511719	2	498.316035	994.617516	-0.69502	-0.00034634	0.55751	0.00027782	-0.1375	-6.8521E-05	498.31628541522076	31.117	0.24545	31.117	31.012	31.257	0					10	5	3	0	0	0	0.35045	1	11713	11713		45.952	7.1458	1	323220	+		46576	13925	30864	30986	47167	47167					0.11999210236672297
VLSSRIGLY	9	Unmodified	_VLSSRIGLY_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.751	1	37.751	37.251	38.251	0								0	0	0	0.34228	1	14782	14782		19.997	0	1		+		46577	12922	30865	30987	47168	47168					0.07810333339944009
VLSTCKNI	8	Unmodified	_VLSTCKNI_					0	0	0		NLRC4|p.F931Lfs*6|1|0.34|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant;NLRC4|p.L964Rfs*6|1|0.05|ENSG00000091106|chr2:32224657-32224658|-/ATAAAGTGTACTC|frameshift_variant;ENSG00000091106|ENST00000402280|NLRC4	NLRC4|p.F931Lfs*6|1|0.34|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant	NLRC4|p.F931Lfs*6|1|0.34|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.24395751953125	2	439.244221	876.473888	0.6283	0.00027598	-1.4405	-0.00063273	-0.81219	-0.00035675	439.2436623080967	28.182	0.24773	28.182	28.084	28.331	0					9	5	3	0	0	0	0.3961	1	10310	10310		71.296	1.6681	1	745350			46578	1849	30866	30988	47169	47169					0.03071040134057057
VLSTRNENK	9	Unmodified	_VLSTRNENK_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.822021484375	2	530.790912	1059.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.352	1	14.352	13.852	14.852	0								0	0	0	0.088368	1	3476	3476		75.043	8.614	1				46579	1212	30867	30989	47170	47170					0.03987055840843823
VLSTVFNSL	9	Unmodified	_VLSTVFNSL_					0	0	0		ENSG00000273238|ENST00000610212|TMEM271	ENSG00000273238|ENST00000610212|TMEM271	ENSG00000273238|ENST00000610212|TMEM271	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2770690917969	2	490.276575	978.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29	1	29	28.5	29.5	0								0	0	0	0.28666	1	9112	9112		37.812	2.1932	1				46580	8093	30868	30990	47171	47171					0.04846938211710494
VLSYVNGL	8	Unmodified	_VLSYVNGL_					0	0	0		ENST00000465425.1_1_19:36494241-36496384:-|nuORF;nc|ENSG00000181392|Q8N205-2|SYNE4;ENSG00000181392|ENST00000324444|SYNE4	ENST00000465425.1_1_19:36494241-36496384:-|nuORF	ENST00000465425.1_1_19:36494241-36496384:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	432.7450866699219	2	432.744911	863.475269	-0.48835	-0.00021133	-0.10403	-4.502E-05	-0.59238	-0.00025635	432.7450156360071	35.594	0.17013	35.594	35.484	35.654	0					6	3	2	0	0	0	0.52345	1	13767	13767		57.811	0	1	96848			46581	6850	30869	30991	47172	47172					0.03806997494461939
VLTGKVEKV	9	Unmodified	_VLTGKVEKV_					0	0	0		ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	ENSG00000085978|ENST00000392017|ATG16L1	ENSG00000085978|ENST00000392017|ATG16L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.8742980957031	3	324.874454	971.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.818	1	20.818	20.318	21.318	0								0	0	0	0.37821	1	6805	6805		24.519	9.1861	1				46582	1739	30870	30992	47173	47173					0.11459503999753906
VLTHGRVRL	9	Unmodified	_VLTHGRVRL_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.83154296875	2	525.830175	1049.6458	0.649	0.00034126	3.0649	0.0016116	3.7139	0.0019529	525.8316989791276	25.138	0.10936	25.138	25.077	25.186	0					5	3	2	0	0	0	0.51817	1	7537	7537		30.504	0	1	36017			46583	4145	30871	30993	47174	47174					0.1229595293661987
VLTPWPVPLK	10	Unmodified	_VLTPWPVPLK_					0	0	0			REV__CON__Q9U6Y5	REV__CON__Q9U6Y5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	383.90435791015625	3	383.905865	1148.69577	-2.1638	-0.00083069	-1.659	-0.0006369	-3.8228	-0.0014676	383.90524764541755	19.146	0.099844	19.146	19.093	19.193	0					4	2	2	0	0	0	0.7315	1	5150	5150		16.717	1.3843	1	372350	+	+	46584	12622	30872	30994	47175	47175					0.12736642821869282
VLTQLGAFY	9	Unmodified	_VLTQLGAFY_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.27947998046875	2	506.279118	1010.54368	-0.71264	-0.00036079	2.5304	0.0012811	1.8178	0.00092029	506.2800123834469	38.71	0.20436	38.71	38.582	38.786	0					18	11	2	0	0	0	0.2873	1	13031	13031		51.335	3.4199	1	52201			46585	4579	30873	30995	47176	47176					0.03883242074334703
VLTQRNPKN	9	Unmodified	_VLTQRNPKN_					0	0	0			REV__nc|ENSG00000170734|Q9Y253-2|POLH	REV__nc|ENSG00000170734|Q9Y253-2|POLH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3081665039062	2	535.309272	1068.60399	0.17762	9.5083E-05	-4.0194	-0.0021516	-3.8417	-0.0020565	535.3069898641364	34.328	0.247	34.328	34.246	34.493	0					13	6	3	0	0	0	0.42902	1	12787	12787		39.253	4.1008	1	119790	+		46586	16374	30874	30996	47177	47177					0.07243352457408037
VLTRSIAII	9	Unmodified	_VLTRSIAII_					0	0	0		nc|ENSG00000110911|P49281-5|SLC11A2;ENSG00000110911|ENST00000262052|SLC11A2;nc|ENSG00000110911|P49281|SLC11A2;nc|ENSG00000110911|P49281-3|SLC11A2;nc|ENSG00000110911|P49281-4|SLC11A2	nc|ENSG00000110911|P49281-5|SLC11A2	nc|ENSG00000110911|P49281-5|SLC11A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.21826171875	3	329.218332	984.633166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23	1	23	22.5	23.5	0								0	0	0	0.39312	1	7865	7865		14.137	5.4434	1				46587	2647	30875	30997	47178	47178					0.14023496753691234
VLVALDHAGL	10	Unmodified	_VLVALDHAGL_					0	0	0		nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2972412109375	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.999	1	46.999	46.499	47.499	0								0	0	0	0.37276	1	18003	18003		38.806	9.6566	1				46588	11790	30876	30998	47179	47179					0.0781033333993264
VLVAQHDVY	9	Unmodified	_VLVAQHDVY_					0	0	0		nc|ENSG00000140374|P13804-2|ETFA;ENST00000559075.5_1_15:76523658-76603729:-|nuORF;ENSG00000140374|ENST00000557943|ETFA	nc|ENSG00000140374|P13804-2|ETFA	nc|ENSG00000140374|P13804-2|ETFA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2794799804688	2	522.279649	1042.54475	1.6137	0.00084282	-2.2058	-0.0011521	-0.59211	-0.00030925	522.2788211185072	36.358	0.43652	36.358	36.211	36.647	0					25	12	3	0	0	0	0.37197	1	13669	13669		44.117	3.3386	1	255480			46589	4380	30877	30999	47180	47180					0.025174564432290936
VLVCSLRQ	8	Unmodified	_VLVCSLRQ_					0	0	0		ENST00000531703.5_1_1:155023817-155026603:+|nuORF	ENST00000531703.5_1_1:155023817-155026603:+|nuORF	ENST00000531703.5_1_1:155023817-155026603:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2680969238281	2	459.265487	916.516422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.051	1	24.051	23.551	24.551	0								0	0	0	1.7419	1	7307	7307		54.776	4.7518	1				46590	10441	30878	31000	47181	47181					0.054824352622858896
VLVGAFLFVC	10	Unmodified	_VLVGAFLFVC_					0	0	0			REV__ENST00000552092.1_1_12:117299165-117317026:-|nuORF	REV__ENST00000552092.1_1_12:117299165-117317026:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.3043212890625	2	534.301539	1066.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.666	1	33.666	33.166	34.166	0								0	0	0	0.27548	1	12819	12819		54.765	5.3231	1		+		46591	20207	30879	31001	47182	47182					0.05789349616020445
VLVGEFAQIQ	10	Unmodified	_VLVGEFAQIQ_					0	0	0		IQCD|p.R380Q|1|0.55|ENSG00000166578|chr12:113195786-113195786|C/T|missense_variant	IQCD|p.R380Q|1|0.55|ENSG00000166578|chr12:113195786-113195786|C/T|missense_variant	IQCD|p.R380Q|1|0.55|ENSG00000166578|chr12:113195786-113195786|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.3089599609375	2	552.308406	1102.60226	-0.3763	-0.00020784	0.7595	0.00041948	0.3832	0.00021165	552.3087853097624	27.161	0.29124	27.161	27.065	27.356	0					18	10	2	0	0	0	0.68774	1	8616	8616		23.523	0	1	76839			46592	11227	30880	31002	47183	47183					0.055062986488110255
VLVIPSSN	8	Unmodified	_VLVIPSSN_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.74462890625	2	414.744911	827.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.138	1	33.138	32.638	33.638	0								0	0	0	1.7419	1	12660	12660		30.504	1.3541	1				46593	4164	30881	31003	47184	47184					0.05462997494475985
VLVKGYDKA	9	Unmodified	_VLVKGYDKA_					0	0	0		MRPS10|p.H83Y|1|0.35|ENSG00000048544|chr6:42211857-42211857|G/A|missense_variant	MRPS10|p.H83Y|1|0.35|ENSG00000048544|chr6:42211857-42211857|G/A|missense_variant	MRPS10|p.H83Y|1|0.35|ENSG00000048544|chr6:42211857-42211857|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7929992675781	2	496.792392	991.570232	-0.059394	-2.9506E-05	-0.5131	-0.0002549	-0.57249	-0.00028441	496.7922468246936	37.912	0.19587	37.912	37.82	38.016	0					17	11	2	0	0	0	0.53083	1	12373	12373		29.15	0	1	58294			46594	11376	30882	31004	47185	47185					0.0741093096565919
VLVLDHIQA	9	Unmodified	_VLVLDHIQA_					0	0	0			REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5343017578125	3	336.53432	1006.58113	0.24131	8.1208E-05	-0.40707	-0.00013699	-0.16576	-5.5784E-05	336.53415525257486	24.142	0.7808	24.142	23.615	24.396	0					44	26	2	0	0	0	0.49003	1	6908	6908		32.812	10.233	1	142070	+		46595	17480	30883	31005	47186	47186					0.07810333339944009
VLVLDHIQA	9	Unmodified	_VLVLDHIQA_					0	0	0			REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53436279296875	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.477	1	34.477	33.977	34.977	0								0	0	0	0.37146	1	11630	11630		19.997	7.1851	1		+		46596	17480	30883	31005	47187	47187					0.07810333339944009
VLVLDHIQA	9	Unmodified	_VLVLDHIQA_					0	0	0			REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5339660644531	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.876	1	36.876	36.376	37.376	0								0	0	0	0.37146	1	12482	12482		14.137	0	1		+		46597	17480	30883	31005	47188	47188					0.07810333339944009
VLVLDHIQA	9	Unmodified	_VLVLDHIQA_					0	0	0			REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5334167480469	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.287	1	38.287	37.787	38.787	0								0	0	0	0.37146	1	12917	12917		14.137	0.68308	1		+		46598	17480	30883	31005	47189	47189					0.07810333339944009
VLVNLTHVI	9	Unmodified	_VLVNLTHVI_					0	0	0			REV__nc|ENSG00000101353|Q9H579|MROH8	REV__nc|ENSG00000101353|Q9H579|MROH8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5461120605469	3	336.546449	1006.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.334	1	29.334	28.834	29.834	0								0	0	0	0.34228	1	9541	9541		19.997	5.8596	1		+		46599	13602	30884	31006	47190	47190					0.1144721023663351
VLVPPVPHQ	9	Unmodified	_VLVPPVPHQ_					0	0	0		GSC|p.S129P|1|0.17|ENSG00000133937|chr14:94769188-94769188|A/G|missense_variant	GSC|p.S129P|1|0.17|ENSG00000133937|chr14:94769188-94769188|A/G|missense_variant	GSC|p.S129P|1|0.17|ENSG00000133937|chr14:94769188-94769188|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.294189453125	2	493.295102	984.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.461	1	47.461	46.961	47.961	0								0	0	0	0.29985	1	18947	18947		35.201	0	1				46600	11172	30885	31007	47191	47191					0.08274654548131366
VLVRCPRP	8	Unmodified	_VLVRCPRP_					0	0	0			REV__SPHK1|p.R301Pfs*44|1|0.38|ENSG00000176170|chr17:76387333-76387333|G/-|frameshift_variant	REV__SPHK1|p.R301Pfs*44|1|0.38|ENSG00000176170|chr17:76387333-76387333|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.27911376953125	2	470.281472	938.548391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.028	1	50.028	49.528	50.528	0								0	0	0	1.7419	1	19767	19767		44.531	3.9584	1		+		46601	16644	30886	31008	47192	47192					0.0766584773609793
VLVRLHPTL	9	Unmodified	_VLVRLHPTL_					0	0	0			REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	349.8938293457031	3	349.89396	1046.66005	0.49723	0.00017398	-1.9828	-0.00069378	-1.4856	-0.00051981	349.89374563099983	33.534	0.32958	33.534	33.368	33.698	0					17	8	3	0	0	0	0.50858	1	12418	12418		31.53	3.6476	1	202140	+		46602	18272	30887	31009	47193	47193					0.1385860536488508
VLWAVACV	8	Carbamidomethyl (C)	_VLWAVAC(Carbamidomethyl (C))V_	VLWAVAC(1)V		VLWAVAC(55)V		0	1	0			REV__MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	REV__MED24|p.K704Sfs*8|1|0.18|ENSG00000008838|chr17:40023272-40023272|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2501525878906	2	459.249306	916.484059	0.80501	0.0003697	1.2207	0.00056061	2.0257	0.00093031	459.2497917372822	23.837	0.74341	23.837	23.444	24.188	0					39	17	5	0	0	0	0.55232	1	7937	7937		54.895	54.895	1	10095000	+		46603	12880	30888	31010	47194	47194	505				0.0224764785930347
VLWLSPLK	8	Unmodified	_VLWLSPLK_					0	0	0			REV__L1MB2_dup2034|chr4:98891323-98891802:+|1.234255234257108|0.2358614318871796|2.39|479.0|28|2|anti-sense	REV__L1MB2_dup2034|chr4:98891323-98891802:+|1.234255234257108|0.2358614318871796|2.39|479.0|28|2|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.3004455566406	2	478.302396	954.590239	-2.9036	-0.0013888	-0.74213	-0.00035496	-3.6458	-0.0017438	478.30202286634204	11.839	0.085625	11.839	11.794	11.88	0					9	5	2	0	0	0	0.6282	1	2262	2262		44.531	44.531	1	84735	+		46604	20804	30889	31011	47195	47195					0.11112726696273967
VLYENPNLK	9	Unmodified	_VLYENPNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.3001708984375	2	545.300581	1088.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.007	1	30.007	29.507	30.507	0								0	0	0	0.14033	1	9818	9818		62.107	16.135	1				46605	7426	30890	31012	47196	47196					0.0458601213174461
VLYENPNLK	9	Unmodified	_VLYENPNLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.3008422851562	2	545.300581	1088.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.007	1	30.007	29.507	30.507	0								0	0	0	0.12601	1	10165	10165		65.465	14.273	1				46606	7426	30890	31012	47197	47197					0.0458601213174461
VLYLEELNRL	10	Unmodified	_VLYLEELNRL_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	421.24322509765625	3	421.243206	1260.70779	-0.91929	-0.00038724	0.0035177	1.4818E-06	-0.91577	-0.00038576	421.2431831359821	20.79	1.8614	20.79	19.031	20.892	0					90	41	3	0	0	0	0.47859	1	6497	6497		36.318	0	1	1508100	+		46607	16411	30891	31013	47198	47198					0.08786214774431755
VLYNNELQ	8	Unmodified	_VLYNNELQ_					0	0	0			REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7574768066406	2	496.756007	991.497461	0.71647	0.00035591	-1.0035	-0.00049851	-0.28707	-0.0001426	496.7555890847453	21.655	0.54012	21.655	21.392	21.932	0					39	12	5	0	0	0	0.52345	1	6863	6863		57.811	0	1	5763100	+		46608	16367	30892	31014	47199	47199					0.001371771722460835
VLYQNYKE	8	Unmodified	_VLYQNYKE_					0	0	0		nc|ENSG00000114790|Q96DR7-3|ARHGEF26;ARHGEF26|p.T596Nfs*3|1|0.29|ENSG00000114790|chr3:154194653-154194654|-/A|frameshift_variant;nc|ENSG00000114790|Q96DR7-4|ARHGEF26;ENSG00000114790|ENST00000465093|ARHGEF26;ARHGEF26|p.A387T|1|0.35|ENSG00000114790|chr3:154129609-154129609|G/A|missense_variant	nc|ENSG00000114790|Q96DR7-3|ARHGEF26	nc|ENSG00000114790|Q96DR7-3|ARHGEF26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7730102539062	2	528.771657	1055.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.7	1	31.7	31.2	32.2	0								0	0	0	1.7419	1	10526	10526		35.618	0	1				46609	217	30893	31015	47200	47200					0.003217502063534994
VMAFDCYM	8	Unmodified	_VMAFDCYM_					0	0	0		ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.1878967285156	2	490.189742	978.364932	-1.2556	-0.00061547	-3.2753	-0.0016055	-4.5309	-0.002221	490.18824176290786	25.938	0.36248	25.938	25.76	26.123	0					12	8	3	0	0	0	0.527	1	8100	8100		57.453	5.1535	1	210620			46610	6595	30894	31016	47201	47201					-0.12511630152084763
VMAKANEKK	9	Unmodified	_VMAKANEKK_					0	0	0		tr|U7T0H3|U7T0H3_FUSNUEthanolamineammonia-lyaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutBPE=3SV=1	tr|U7T0H3|U7T0H3_FUSNUEthanolamineammonia-lyaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutBPE=3SV=1	tr|U7T0H3|U7T0H3_FUSNUEthanolamineammonia-lyaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutBPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2923583984375	2	509.789327	1017.5641	0.95882	0.0004888	2.6411	0.0013464	3.6	0.0018352	510.29150265944867	33.678	0.5502	33.678	33.497	34.048	0					35	14	5	0	0	0	0.36892	1	12477	12477		44.377	44.377	1	1112900			46611	22905	30895	31017	47202	47202					0.05602089462490767
VMALKGLGKP	10	Oxidation (M)	_VM(Oxidation (M))ALKGLGKP_		VM(1)ALKGLGKP		VM(41)ALKGLGKP	0	0	1		ENST00000526145.6_2_11:128332223-128332259:-|nuORF	ENST00000526145.6_2_11:128332223-128332259:-|nuORF	ENST00000526145.6_2_11:128332223-128332259:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3096313476562	2	515.309895	1028.60524	1.4062	0.00072461	-1.3793	-0.00071077	0.026851	1.3837E-05	515.309178487319	41.167	0.27043	41.167	41.014	41.285	0					17	11	2	0	0	0	0.54197	1	16158	16158		40.778	6.6056	1	136750			46612	10372	30896	31018	47203	47203		415			0.09207850501957182
VMALKGLGKP	10	Unmodified	_VMALKGLGKP_					0	0	0		ENST00000526145.6_2_11:128332223-128332259:-|nuORF	ENST00000526145.6_2_11:128332223-128332259:-|nuORF	ENST00000526145.6_2_11:128332223-128332259:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.3132629394531	2	507.312438	1012.61032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.722	1	43.722	43.222	44.222	0								0	0	0	0.35368	1	15114	15114		42.396	3.1433	1				46613	10372	30896	31019	47204	47204					0.10452154364577382
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.31280517578125	2	507.312438	1012.61032	-0.032806	-1.6643E-05	0.49092	0.00024905	0.45811	0.00023241	507.3128069552871	42.826	0.21567	42.826	42.773	42.989	0					25	11	3	0	0	0	0.36892	1	16206	16206		44.377	0	1	323580			46614	7768	30897	31020	47205	47205					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.3122863769531	2	507.312438	1012.61032	-0.032393	-1.6433E-05	-0.39439	-0.00020008	-0.42678	-0.00021651	507.31240106554395	43.957	0.33405	43.957	43.793	44.127	0					34	18	4	0	0	0	0.22837	1	16511	16511		58.23	0	1	274520			46615	7768	30897	31020	47206	47206					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.3129577636719	2	507.312438	1012.61032	1.1151	0.00056569	-1.2283	-0.00062315	-0.11328	-5.7467E-05	507.3119232399235	43.876	0.40976	43.876	43.742	44.152	0					47	21	4	0	0	0	0.33044	1	17116	17116		47.657	0	1	611680			46616	7768	30897	31020	47207	47207					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.3133544921875	2	507.312438	1012.61032	1.2908	0.00065486	-0.40055	-0.0002032	0.8903	0.00045166	507.3126146371486	42.741	0.29827	42.741	42.662	42.96	0					25	9	4	0	0	0	0.28897	1	17083	17083		51.193	0	1	353410			46617	7768	30897	31020	47208	47208					0.10452154364600119
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.3046569824219	2	500.304613	998.594672	-1.015	-0.00050779	1.5032	0.00075208	0.48829	0.00024429	500.3053756415293	40.105	0.17254	40.105	40.056	40.229	0					15	9	2	0	0	0	0.44593	1	13446	13446		37.812	7.3079	1	77464			46618	7903	30898	31021	47209	47209					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.30523681640625	2	500.304613	998.594672	0.15679	7.8441E-05	0.77775	0.00038911	0.93454	0.00046755	500.30511215250345	40.138	0.11758	40.138	40.079	40.196	0					11	6	2	0	0	0	0.25716	1	14263	14263		54.776	11.15	1	61411			46619	7903	30898	31021	47210	47210					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.3043212890625	2	500.304613	998.594672	1.0931	0.00054688	-1.3683	-0.00068456	-0.27519	-0.00013768	500.30404874358464	40.3	0.41357	40.3	40.176	40.59	0					21	9	3	0	0	0	0.35021	1	15980	15980		45.972	8.8131	1	1333300			46620	7903	30898	31021	47211	47211					0.09531867847545072
VMAQVYAR	8	Unmodified	_VMAQVYAR_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2493896484375	2	469.249837	936.485122	-0.98642	-0.00046288	-0.020551	-9.6435E-06	-1.007	-0.00047252	469.25005962291436	27.739	0.31139	27.739	27.586	27.897	0					10	6	2	0	0	0	0.67475	1	10098	10098		37.028	3.5129	1	106390	+		46621	12092	30899	31022	47212	47212					0.014338622282025426
VMASSVVPK	9	Unmodified	_VMASSVVPK_					0	0	0		ENSG00000232268|ENST00000530443|OR52I1;OR52I1|p.V86A|1|0.26|ENSG00000232268|chr11:4594295-4594295|T/C|missense_variant;ENSG00000226288|ENST00000641896|OR52I2;nc|ENSG00000226288|Q8NH67|OR52I2	ENSG00000232268|ENST00000530443|OR52I1	ENSG00000232268|ENST00000530443|OR52I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2593688964844	2	459.259871	916.505189	0.037193	1.7081E-05	-0.059634	-2.7387E-05	-0.022441	-1.0306E-05	459.2597757904347	33.982	0.1491	33.982	33.89	34.039	0					9	4	3	0	0	0	0.32741	1	11972	11972		47.916	0	1	112170			46622	7897	30900	31023	47213	47213					0.04359613168173837
VMDEKGYSML	10	Oxidation (M)	_VMDEKGYSM(Oxidation (M))L_		VMDEKGYSM(1)L		VM(-40)DEKGYSM(40)L	0	0	1			REV__ENSG00000019485|ENST00000683152|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.7676391601562	2	594.7674	1187.52025	0.22233	0.00013223	0.090354	5.374E-05	0.31268	0.00018597	594.7676767956109	27.123	0.21384	27.123	27.037	27.251	0					11	5	3	0	0	0	0.54197	1	9448	9448		40.778	6.6056	2	506880	+		46623	12931	30901	31024	47214	47214		497			-0.06601307816799817
VMDIPYLNL	9	Unmodified	_VMDIPYLNL_					0	0	0		nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.7864379882812	2	539.286085	1076.55762	0.25052	0.0001351	-1.8055	-0.00097368	-1.555	-0.00083858	539.2852636156413	41.171	0.19813	41.171	41.052	41.25	0					17	9	2	0	0	0	0.39215	1	15648	15648		42.396	0.96952	1	95994			46624	4405	30902	31025	47215	47215					0.02240151511091426
VMEENGVNRI	10	Unmodified	_VMEENGVNRI_					0	0	0		tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.7900390625	2	580.790055	1159.56556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.261	1	35.261	34.761	35.761	0								0	0	0	0.4044	1	11924	11924		29.17	2.4771	1				46625	22848	30903	31026	47216	47216					-0.007843212393936483
VMFLFSYIL	9	Unmodified	_VMFLFSYIL_					0	0	0		ENSG00000168131|ENST00000303324|OR2B2;OR2B2|p.Y252Mfs*34|1|0.34|ENSG00000168131|chr6:27911566-27911566|A/-|frameshift_variant	ENSG00000168131|ENST00000303324|OR2B2	ENSG00000168131|ENST00000303324|OR2B2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	378.20709228515625	3	378.208556	1131.60384	-0.72503	-0.00027421	-2.758	-0.0010431	-3.4831	-0.0013173	378.2074741959894	14.249	0.11143	14.249	14.216	14.327	0					5	3	2	0	0	0	0.59802	1	3057	3057		21.96	0	1	278990			46626	6065	30904	31027	47217	47217					0.04330216413200105
VMFSSCLRCV	10	Unmodified	_VMFSSCLRCV_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.7715454101562	2	572.769222	1143.52389	3.3723	0.0019316	-0.19971	-0.00011439	3.1726	0.0018172	572.7691866425502	39.688	0.50471	39.688	39.543	40.048	0					38	11	4	0	0	0	0.62235	1	15668	15668		31.53	3.6476	1	2061700			46627	3780	30905	31028	47218	47218					-0.04212916523943022
VMFVHKEI	8	Unmodified	_VMFVHKEI_					0	0	0			REV__ANKRD27|p.V858M|1|0.26|ENSG00000105186|chr19:32604346-32604346|C/T|missense_variant	REV__ANKRD27|p.V858M|1|0.26|ENSG00000105186|chr19:32604346-32604346|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.27874755859375	2	501.775688	1001.53682	0.69392	0.00034819	3.2478	0.0016297	3.9417	0.0019779	502.2787190141783	35.642	0.19347	35.642	35.569	35.763	0					8	5	2	0	0	0	0.60719	1	13390	13390		47.916	5.4411	1	130790	+		46628	12161	30906	31029	47219	47219					0.036116059221058094
VMGILMRY	8	Unmodified	_VMGILMRY_					0	0	0			REV__ENSG00000188573|ENST00000338333|FBLL1	REV__ENSG00000188573|ENST00000338333|FBLL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.76336669921875	2	491.764266	981.513979	-0.54412	-0.00026758	-2.1257	-0.0010454	-2.6699	-0.0013129	491.76328422966924	35.747	0.27735	35.747	35.664	35.942	0					12	7	2	0	0	0	0.67475	1	13438	13438		37.028	6.7108	1	268140	+		46629	17175	30907	31030	47220	47220					0.022482635329879486
VMGLPQILS	9	Unmodified	_VMGLPQILS_					0	0	0			REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.2769470214844	2	479.275521	956.536489	-1.4232	-0.00068213	4.2057	0.0020157	2.7824	0.0013336	479.2777417529989	26.002	0.13312	26.002	25.93	26.063	0					7	4	2	0	0	0	0.17854	1	8126	8126		64.207	9.3127	1	134230	+		46630	12760	30908	31031	47221	47221					0.05648186202256511
VMGLWSGII	9	Unmodified	_VMGLWSGII_					0	0	0		ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.27130126953125	2	488.270238	974.525924	0.49372	0.00024107	1.5518	0.00075772	2.0456	0.00099879	488.2707373019186	32.656	0.16379	32.656	32.587	32.751	0					8	5	2	0	0	0	0.49003	1	11378	11378		33.516	0.022601	1	52274			46631	4493	30909	31032	47222	47222					0.03764203547837042
VMGPYPVR	8	Unmodified	_VMGPYPVR_					0	0	0			REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF	REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.7470397949219	2	459.746931	917.479308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.332	1	19.332	18.832	19.832	0								0	0	0	1.7419	1	4982	4982		42.474	4.6629	1		+		46632	17313	30910	31033	47223	47223					0.017267637165446104
VMHLSELVN	9	Unmodified	_VMHLSELVN_					0	0	0			REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2726440429688	2	521.273509	1040.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.009	1	36.009	35.509	36.509	0								0	0	0	0.19749	1	13996	13996		51.335	5.3835	1		+		46633	12760	30911	31034	47224	47224					0.013820967085393931
VMIFHSSCI	9	Carbamidomethyl (C)	_VMIFHSSC(Carbamidomethyl (C))I_	VMIFHSSC(1)I		VMIFHSSC(60)I		0	1	0			REV__nc|ENSG00000225997|P0C604|OR4A8	REV__nc|ENSG00000225997|P0C604|OR4A8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2626953125	2	547.262087	1092.50962	1.8933	0.0010361	-0.47912	-0.0002622	1.4142	0.00077391	547.2617312613456	22.527	0.26814	22.527	22.37	22.638	0					15	5	4	0	0	0	0.21116	1	7520	7520		60.294	12.334	1	680620	+		46634	21219	30912	31035	47225	47225	731				-0.03293245680583823
VMIGLAWVIS	10	Unmodified	_VMIGLAWVIS_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.8117065429688	2	544.81227	1087.60999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.905	1	26.905	26.405	27.405	0								0	0	0	0.33119	1	8513	8513		45.952	10.751	1				46635	3828	30913	31036	47226	47226					0.06968734644715369
VMIHFHLM	8	2 Oxidation (M)	_VM(Oxidation (M))IHFHLM(Oxidation (M))_		VM(1)IHFHLM(1)		VM(44)IHFHLM(44)	0	0	2		nc|ENSG00000143190|P14859-3|POU2F1	nc|ENSG00000143190|P14859-3|POU2F1	nc|ENSG00000143190|P14859-3|POU2F1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2608642578125	2	530.259348	1058.50414	3.4381	0.0018231	0.67201	0.00035634	4.1101	0.0021794	530.2596766637305	39.818	2.3657	39.818	38.903	41.269	0					143	51	4	0	0	0	0.63381	1	15461	15461		43.626	43.626	1	1919900			46636	11559	30914	31037	47227	47227		449;450			-0.022769244724031523
VMITKSNGG	9	Unmodified	_VMITKSNGG_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.7423400878906	2	453.739302	905.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.937	1	23.937	23.437	24.437	0								0	0	0	0.063706	1	8187	8187		82.241	7.1972	1		+		46637	15715	30915	31038	47228	47228					0.007538521286846844
VMIVTEYME	9	2 Oxidation (M)	_VM(Oxidation (M))IVTEYM(Oxidation (M))E_		VM(1)IVTEYM(1)E		VM(58)IVTEYM(58)E	0	0	2		ENSG00000044524|ENST00000336596|EPHA3;EPHA3|p.M847Wfs*10|4|0.2|ENSG00000044524|chr3:89450213-89450213|C/-|frameshift_variant;nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.7572631835938	2	573.756501	1145.49845	1.6658	0.00095576	-0.086555	-4.9662E-05	1.5792	0.0009061	573.756609431056	35.736	0.41067	35.736	35.671	36.081	0					15	8	4	0	0	0	0.23186	1	13831	13831		57.811	11.839	1	590690			46638	1210	30917	31039	47229	47229		57;58			-0.06848112565353404
VMKAGDKAIG	10	Unmodified	_VMKAGDKAIG_					0	0	0			REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.7771301269531	2	495.276052	988.537551	-2.4384	-0.0012077	1.9748	0.00097809	-0.46353	-0.00022958	495.2770529231663	30.183	0.24805	30.183	30.003	30.251	0					16	6	3	0	0	0	0.39566	1	10195	10195		56.721	1.9447	1	720820	+		46639	14635	30918	31040	47230	47230					0.04282400571173639
VMKHMVIGL	9	Unmodified	_VMKHMVIGL_					0	0	0			REV__ENST00000244221.8_1_2:71415458-71415581:-|nuORF	REV__ENST00000244221.8_1_2:71415458-71415581:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.29296875	2	514.293191	1026.57183	0.021148	1.0876E-05	-0.29916	-0.00015386	-0.27801	-0.00014298	514.2929763631728	28.466	0.16821	28.466	28.358	28.526	0					10	4	3	0	0	0	0.41113	1	10078	10078		25.45	0	1	319490	+		46640	17937	30919	31041	47231	47231					0.059605254584312206
VMKLQKGR	8	Unmodified	_VMKLQKGR_					0	0	0		ENST00000453008.2_1_2:88927833-88927890:+|nuORF	ENST00000453008.2_1_2:88927833-88927890:+|nuORF	ENST00000453008.2_1_2:88927833-88927890:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2921142578125	2	480.294579	958.574605	-2.9255	-0.0014051	-1.9691	-0.00094575	-4.8946	-0.0023509	480.2935082852241	37.755	0.25526	37.755	37.644	37.899	0					23	12	3	0	0	0	0.66372	1	13486	13486		38.806	38.806	1	162330			46641	9663	30920	31042	47232	47232					0.0936611690758582
VMLKRCIT	8	Unmodified	_VMLKRCIT_					0	0	0			REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	REV__CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.276611328125	2	482.277541	962.540528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.337	1	27.337	26.837	27.837	0								0	0	0	1.7419	1	8412	8412		19.36	0.25645	1		+		46642	12442	30921	31043	47233	47233					0.057759524243010674
VMLLSLTSTAV	11	Unmodified	_VMLLSLTSTAV_					0	0	0			REV__nc|ENSG00000062524|P29376-5|LTK	REV__nc|ENSG00000062524|P29376-5|LTK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.8296508789062	2	567.825575	1133.6366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.762	1	41.762	41.262	42.262	0								0	0	0	0.34425	1	16630	16630		45.972	3.5761	1		+		46643	13091	30922	31044	47234	47234					0.07512378745377646
VMLLWRIL	8	Unmodified	_VMLLWRIL_					0	0	0			REV__ENSG00000163545|ENST00000367157|NUAK2	REV__ENSG00000163545|ENST00000367157|NUAK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.3267211914062	2	522.325348	1042.63614	3.4012	0.0017766	-0.43923	-0.00022942	2.962	0.0015471	522.3250050260402	27.686	0.22005	27.686	27.577	27.797	0					12	4	4	0	0	0	0.34071	1	9928	9928		77.944	0	1	1221300	+		46644	15892	30923	31045	47235	47235					0.116530486068541
VMLQELPPI	9	Unmodified	_VMLQELPPI_					0	0	0			REV__ENSG00000075884|ENST00000295095|ARHGAP15	REV__ENSG00000075884|ENST00000295095|ARHGAP15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.90216064453125	3	347.200061	1038.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.253	1	36.253	35.753	36.753	0								0	0	0	0.21054	1	14104	14104		49.442	12.995	1		+		46645	13243	30924	31046	47236	47236					0.0606074189076935
VMLYLIVY	8	Unmodified	_VMLYLIVY_					0	0	0			REV__ENSG00000159197|ENST00000290310|KCNE2	REV__ENSG00000159197|ENST00000290310|KCNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.289794921875	2	507.29064	1012.56673	-0.37235	-0.00018889	-1.5915	-0.00080735	-1.9638	-0.00099624	507.28976388134953	31.921	0.11844	31.921	31.827	31.945	0					4	2	2	0	0	0	0.70073	1	12081	12081		33.493	5.6107	1	57868	+		46646	15706	30925	31047	47237	47237					0.06094544867437435
VMNFQLLN	8	Unmodified	_VMNFQLLN_					0	0	0		ENST00000567514.1_1_3:12602292-12602403:-|nuORF	ENST00000567514.1_1_3:12602292-12602403:-|nuORF	ENST00000567514.1_1_3:12602292-12602403:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.75775146484375	2	489.757495	977.500437	-1.2541	-0.00061422	2.0236	0.00099107	0.76946	0.00037685	489.7582293108121	33.557	0.24106	33.557	33.361	33.602	0					15	9	2	0	0	0	0.64096	1	11281	11281		42.474	10.52	1	57007			46647	10770	30926	31048	47238	47238					0.010787290254029358
VMNKFSEMI	9	Unmodified	_VMNKFSEMI_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7698974609375	2	549.769745	1097.52494	1.8259	0.0010038	-3.8002	-0.0020892	-1.9743	-0.0010854	549.7680380967267	33.051	0.28944	33.051	32.909	33.199	0					11	6	2	0	0	0	0.1115	1	12513	12513		76.774	14.667	1	1044800	+		46648	14673	30927	31049	47239	47239					-0.019923788833693834
VMNNNSLLL	9	Unmodified	_VMNNNSLLL_					0	0	0		ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF	ENSG00000138380|ENST00000438828|CARF	ENSG00000138380|ENST00000438828|CARF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2734375	2	509.273509	1016.53247	-0.51493	-0.00026224	0.91605	0.00046652	0.40112	0.00020428	509.2744157360628	37.56	0.1394	37.56	37.46	37.6	0					10	7	2	0	0	0	0.32741	1	12675	12675		47.916	3.3845	1	65488			46649	4251	30928	31050	47240	47240					0.02486096708560126
VMNRIQPFL	9	Unmodified	_VMNRIQPFL_					0	0	0			REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.314453125	2	559.312969	1116.61138	1.7698	0.00098988	0.79465	0.00044446	2.5645	0.0014343	559.3133189456942	23.453	0.46641	23.453	23.145	23.612	0					13	9	2	0	0	0	0.16002	1	8098	8098		31.955	0	1	668570	+		46650	20573	30929	31051	47241	47241					0.05774368733477786
VMNTRTEQT	9	Unmodified	_VMNTRTEQT_					0	0	0		RPS6KC1|p.D354N|1|0.26|ENSG00000136643|chr1:213230512-213230512|G/A|missense_variant	RPS6KC1|p.D354N|1|0.26|ENSG00000136643|chr1:213230512-213230512|G/A|missense_variant	RPS6KC1|p.D354N|1|0.26|ENSG00000136643|chr1:213230512-213230512|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7698364257812	2	540.26113	1078.50771	2.0951	0.0011319	-1.4337	-0.00077458	0.66138	0.00035732	540.2592607936481	28.801	0.16893	28.801	28.691	28.86	0					5	3	2	0	0	0	0.48389	1	10468	10468		34.173	2.6427	1	188570			46651	22359	30930	31052	47242	47242					-0.028405831648342428
VMPLSSNHG	9	Unmodified	_VMPLSSNHG_					0	0	0			REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2299499511719	2	471.229102	940.443651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.329	1	31.329	30.829	31.829	0								0	0	0	0.35899	1	10062	10062		23.042	2.5607	1		+		46652	17447	30931	31053	47243	47243					-0.02895318531113844
VMPMIIKM	8	2 Oxidation (M)	_VMPM(Oxidation (M))IIKM(Oxidation (M))_		VM(0.014)PM(0.986)IIKM(1)		VM(-19)PM(19)IIKM(45)	0	0	2			REV__ENSG00000021645|ENST00000335750|NRXN3	REV__ENSG00000021645|ENST00000335750|NRXN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.75885009765625	2	497.760335	993.506116	-2.2632	-0.0011265	-1.0854	-0.00054025	-3.3486	-0.0016668	497.7596762171009	27.697	0.42739	27.697	27.565	27.992	0					24	10	3	0	0	0	0.61433	1	9082	9082		46.766	46.766	3	466130	+		46653	12938	30932	31054	47244	47244		498;499			0.00910368221218505
VMPMMCRFT	9	Unmodified	_VMPMMCRFT_					0	0	0		ENST00000343876.6_2_2:179732817-179732874:-|nuORF	ENST00000343876.6_2_2:179732817-179732874:-|nuORF	ENST00000343876.6_2_2:179732817-179732874:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.248779296875	2	558.247069	1114.47958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.629	1	44.629	44.129	45.129	0								0	0	0	0.35899	1	17881	17881		23.042	3.0457	1				46654	8751	30933	31055	47245	47245					-0.07307643941771857
VMQTKRMAL	9	Unmodified	_VMQTKRMAL_					0	0	0		KLHL36|p.T288M|1|0.32|ENSG00000135686|chr16:84657670-84657670|C/T|missense_variant	KLHL36|p.T288M|1|0.32|ENSG00000135686|chr16:84657670-84657670|C/T|missense_variant	KLHL36|p.T288M|1|0.32|ENSG00000135686|chr16:84657670-84657670|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.3016967773438	2	539.299004	1076.58346	1.0134	0.00054655	2.7112	0.0014621	3.7246	0.0020087	539.3005849533778	34.572	0.23816	34.572	34.49	34.728	0					8	6	2	0	0	0	0.41958	1	12257	12257		32.812	0	1	135600			46655	11261	30934	31056	47246	47246					0.048227224817310343
VMRDPASK	8	Unmodified	_VMRDPASK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.23974609375	2	452.23947	902.464386	0.57094	0.0002582	0.15431	6.9784E-05	0.72525	0.00032799	452.23948545972917	19.208	0.37791	19.208	18.949	19.327	0					14	11	2	0	0	0	0.6088	1	4921	4921		47.657	5.2612	1	54821			46656	3273	30935	31057	47247	47247					0.009252718485413425
VMRDPNTK	8	Unmodified	_VMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000412087.2_1_X:100143133-100143544:-|nuORF;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000391992.3_1_12:9181361-9181625:-|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.75	2	480.750201	959.48585	0.035449	1.7042E-05	-0.48286	-0.00023213	-0.44741	-0.00021509	480.7500013750929	17.594	0.14123	17.594	17.495	17.636	0					7	4	2	0	0	0	0.65148	1	4205	4205		40.778	5.1599	1	82654			46657	517;9580	30936	31058	47248	47248					0.00448656877256326
VMRDPNTK	8	Unmodified	_VMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000412087.2_1_X:100143133-100143544:-|nuORF;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000391992.3_1_12:9181361-9181625:-|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.7499694824219	2	480.750201	959.48585	0.51218	0.00024623	-0.78775	-0.00037871	-0.27558	-0.00013248	480.7498820174065	17.902	0.31215	17.902	17.696	18.009	0					12	7	2	0	0	0	0.27565	1	5125	5125		90.601	16.626	1	670820			46658	517;9580	30936	31058	47249	47249					0.00448656877256326
VMRDPNTK	8	Unmodified	_VMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000412087.2_1_X:100143133-100143544:-|nuORF;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000391992.3_1_12:9181361-9181625:-|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.74969482421875	2	480.750201	959.48585	-0.63771	-0.00030658	-0.43466	-0.00020896	-1.0724	-0.00051554	480.75011620540835	17.843	0.26425	17.843	17.683	17.947	0					12	5	3	0	0	0	0.25143	1	5213	5213		98.629	1.1567	1	406650			46659	517;9580	30936	31058	47250	47250					0.00448656877256326
VMRDPQTK	8	Unmodified	_VMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7578125	2	487.758027	973.5015	0.39679	0.00019354	-0.85056	-0.00041487	-0.45377	-0.00022133	487.7578810804671	18.407	0.27924	18.407	18.182	18.461	0					9	6	2	0	0	0	0.62915	1	5369	5369		44.377	0.26039	1	83791			46660	6211	30937	31059	47251	47251					0.01368943394300004
VMRDPQTK	8	Unmodified	_VMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7582702636719	2	487.758027	973.5015	0.73197	0.00035703	-0.5858	-0.00028573	0.14617	7.1295E-05	487.75776047195694	18.392	0.4024	18.392	18.082	18.485	0					14	9	2	0	0	0	0.24844	1	5387	5387		104.06	2.8042	1	278070			46661	6211	30937	31059	47252	47252					0.01368943394300004
VMRDPQTK	8	Unmodified	_VMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7578125	2	487.758027	973.5015	-0.081328	-3.9668E-05	-0.016042	-7.8245E-06	-0.097369	-4.7493E-05	487.7581495086461	18.318	0.37133	18.318	18.055	18.427	0					19	7	3	0	0	0	0.24844	1	5612	5612		104.06	15.414	1	889120			46662	6211	30937	31059	47253	47253					0.01368943394300004
VMRDPQTK	8	Unmodified	_VMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7582702636719	2	487.758027	973.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.151	1	18.151	17.651	18.651	0								0	0	0	1.7419	1	4680	4680		52.937	1.6012	1				46663	6211	30937	31059	47254	47254					0.01368943394300004
VMRDPQTK	8	Unmodified	_VMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7578125	2	487.758027	973.5015	-0.53044	-0.00025873	0.95042	0.00046358	0.41998	0.00020485	487.75857285078854	18.333	0.45957	18.333	17.978	18.438	0					18	9	3	0	0	0	0.30066	1	5457	5457		82.75	5.9763	1	817960			46664	6211	30937	31059	47255	47255					0.01368943394300004
VMREVPTLL	9	Unmodified	_VMREVPTLL_					0	0	0			REV__ENST00000521825.1_1_8:143353010-143361338:-|nuORF	REV__ENST00000521825.1_1_8:143353010-143361338:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.3074340820312	2	529.307352	1056.60015	0.11201	5.9289E-05	0.30752	0.00016277	0.41953	0.00022206	529.3077327383336	39.576	0.13431	39.576	39.499	39.633	0					10	5	3	0	0	0	0.16806	1	15061	15061		40.778	0	1	149730	+		46665	19962	30938	31060	47256	47256					0.07411546639355038
VMSATFAKF	9	Unmodified	_VMSATFAKF_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.25909423828125	2	501.259871	1000.50519	-0.10925	-5.4762E-05	-1.6208	-0.00081243	-1.73	-0.00086719	501.2593464587126	40.111	0.16339	40.111	40.038	40.201	0					16	6	3	0	0	0	0.15163	1	15300	15300		67.494	7.3754	1	189720			46666	1583	30939	31061	47257	47257					0.004956131681524312
VMSATFAKF	9	Unmodified	_VMSATFAKF_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.26068115234375	2	501.259871	1000.50519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.873	1	39.873	39.373	40.373	0								0	0	0	0.14033	1	14198	14198		62.107	8.756	1				46667	1583	30939	31061	47258	47258					0.004956131681524312
VMSATFAKF	9	Unmodified	_VMSATFAKF_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.26007080078125	2	501.259871	1000.50519	-2.1109	-0.0010581	2.3603	0.0011831	0.24943	0.00012503	501.26106994138735	39.927	0.11716	39.927	39.813	39.93	0					11	6	2	0	0	0	0.25716	1	14201	14201		54.776	15.97	1	68157			46668	1583	30939	31061	47259	47259					0.004956131681524312
VMSATFAKF	9	Unmodified	_VMSATFAKF_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.260009765625	2	501.259871	1000.50519	1.1209	0.00056185	-1.4235	-0.00071354	-0.30261	-0.00015169	501.25938098347086	40.054	0.27966	40.054	39.867	40.147	0					14	6	4	0	0	0	0.0049871	1	15864	15864		158.07	81.3	1	991370			46669	1583	30939	31061	47260	47260					0.004956131681524312
VMSATFAKF	9	Oxidation (M)	_VM(Oxidation (M))SATFAKF_		VM(1)SATFAKF		VM(62)SATFAKF	0	0	1		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2566833496094	2	509.257328	1016.5001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.179	1	35.179	34.679	35.679	0								0	0	0	0.14033	1	13614	13614		62.107	8.756	1				46670	1583	30939	31062	47261	47261		75			-0.007486906944563998
VMSLPDKL	8	Unmodified	_VMSLPDKL_					0	0	0		tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7503662109375	2	451.754421	901.494289	-0.087157	-3.9374E-05	-1.8859	-0.00085195	-1.973	-0.00089132	451.75211175720636	26.392	0.62254	26.392	26.081	26.704	0					31	14	3	0	0	0	0.61938	1	8522	8522		45.952	1.4209	1	156920			46671	22954	30940	31063	47262	47262					0.03960210793866281
VMSPLRTLL	9	Unmodified	_VMSPLRTLL_					0	0	0		nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3103637695312	2	515.309895	1028.60524	1.501	0.0007735	-1.3969	-0.00071983	0.10417	5.3678E-05	515.3092400036844	40.07	0.40243	40.07	39.957	40.359	0					22	9	3	0	0	0	0.16806	1	15886	15886		65.465	0	1	261270			46672	11725	30941	31064	47263	47263					0.0920785050197992
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.2973022460938	2	548.296985	1094.57942	1.2418	0.00068086	-0.33109	-0.00018153	0.91068	0.00049932	548.2970329131176	36.438	0.086639	36.438	36.399	36.486	0					8	4	2	0	0	0	0.41055	1	11950	11950		55.084	9.1117	1	46456			46673	5221	30942	31065	47264	47264					0.035909562596543765
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2974853515625	2	548.296985	1094.57942	0.48798	0.00026756	-0.73822	-0.00040476	-0.25025	-0.00013721	548.296958007138	36.71	0.3162	36.71	36.586	36.902	0					19	8	3	0	0	0	0.071575	1	13871	13871		102.06	45.628	1	311260			46674	5221	30942	31065	47265	47265					0.035909562596543765
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.2979736328125	2	548.296985	1094.57942	0.39997	0.0002193	0.39778	0.0002181	0.79775	0.0004374	548.2974264545769	36.498	0.24998	36.498	36.411	36.661	0					36	13	4	0	0	0	0.18814	1	12352	12352		80.916	43.105	1	400430			46675	5221	30942	31065	47266	47266					0.035909562596543765
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.29736328125	2	548.296985	1094.57942	1.8629	0.0010214	-2.44	-0.0013378	-0.57712	-0.00031643	548.2960675376244	36.622	0.26511	36.622	36.513	36.778	0					14	5	4	0	0	0	0.023179	1	14259	14259		122.94	48.774	1	304240			46676	5221	30942	31065	47267	47267					0.035909562596543765
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2972412109375	2	548.296985	1094.57942	3.8146	0.0020915	-4.1268	-0.0022627	-0.31221	-0.00017118	548.2950863062085	36.659	0.46698	36.659	36.496	36.963	0					38	9	5	0	0	0	0.0021387	1	14251	14251		174.86	87.111	1	5690700			46677	5221	30942	31065	47268	47268					0.035909562596543765
VMSQALKATF	10	Oxidation (M)	_VM(Oxidation (M))SQALKATF_		VM(1)SQALKATF		VM(53)SQALKATF	0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	556.2951049804688	2	556.294442	1110.57433	0.11551	6.4258E-05	1.0032	0.00055809	1.1187	0.00062235	556.2950897014837	31.874	0.23153	31.874	31.762	31.994	0					16	9	2	0	0	0	0.4287	1	10605	10605		53.089	12.311	1	86568			46678	5221	30942	31066	47269	47269		211			0.02346652397022808
VMSQALKATF	10	Oxidation (M)	_VM(Oxidation (M))SQALKATF_		VM(1)SQALKATF		VM(150)SQALKATF	0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2946166992188	2	556.294442	1110.57433	1.8231	0.0010142	-1.9598	-0.0010902	-0.1367	-7.6044E-05	556.2938279807845	32.053	0.31789	32.053	31.902	32.219	0					17	6	4	0	0	0	0.0083517	1	12041	12041		150.81	62.633	1	446880			46679	5221	30942	31066	47270	47270		211			0.02346652397022808
VMTGSYNNF	9	Unmodified	_VMTGSYNNF_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.7266845703125	2	516.726392	1031.43823	1.3437	0.00069432	0.10867	5.6155E-05	1.4524	0.00075048	516.7264324716805	37.883	0.24974	37.883	37.754	38.004	0					21	14	2	0	0	0	0.12834	1	12370	12370		72.879	30.483	1	117040			46680	19	30943	31067	47271	47271					-0.07623042113618794
VMTGSYNNF	9	Unmodified	_VMTGSYNNF_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.7267456054688	2	516.726392	1031.43823	1.2671	0.00065475	-1.2538	-0.00064788	0.013285	6.8645E-06	516.7259337108882	38.159	0.34215	38.159	38.097	38.439	0					30	13	4	0	0	0	0.30841	1	14477	14477		49.536	3.5638	1	624760			46681	19	30943	31067	47272	47272					-0.07623042113618794
VMTGSYNNF	9	Unmodified	_VMTGSYNNF_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.726318359375	2	516.726392	1031.43823	-0.013886	-7.175E-06	0.44503	0.00022996	0.43115	0.00022279	516.7264786707093	37.946	0.22023	37.946	37.86	38.08	0					18	12	2	0	0	0	0.12834	1	12809	12809		72.879	34.073	1	120410			46682	19	30943	31067	47273	47273					-0.07623042113618794
VMTGSYNNF	9	Unmodified	_VMTGSYNNF_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7267456054688	2	516.726392	1031.43823	1.1723	0.00060575	0.36267	0.0001874	1.535	0.00079315	516.7263960305418	37.921	0.09264	37.921	37.847	37.94	0					8	4	2	0	0	0	0.12239	1	13562	13562		74.255	15.473	1	68972			46683	19	30943	31067	47274	47274					-0.07623042113618794
VMTGSYNNF	9	Unmodified	_VMTGSYNNF_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.7260131835938	2	516.726392	1031.43823	0.83189	0.00042986	-0.23355	-0.00012068	0.59834	0.00030918	516.7263097441838	37.929	0.21252	37.929	37.841	38.053	0					20	10	3	0	0	0	0.023928	1	13560	13560		115.49	46.707	1	174990			46684	19	30943	31067	47275	47275					-0.07623042113618794
VMTGSYNNF	9	Unmodified	_VMTGSYNNF_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7264404296875	2	516.726392	1031.43823	1.5381	0.00079476	-1.4262	-0.00073697	0.11185	5.7795E-05	516.725538523848	38.119	0.42985	38.119	37.974	38.404	0					17	9	3	0	0	0	0.023928	1	14971	14971		115.49	59.99	1	831260			46685	19	30943	31067	47276	47276					-0.07623042113618794
VMVFTSINK	9	Unmodified	_VMVFTSINK_					0	0	0		tr|U7SM98|U7SM98_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01874PE=4SV=1	tr|U7SM98|U7SM98_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01874PE=4SV=1	tr|U7SM98|U7SM98_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01874PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7882080078125	2	519.786253	1037.55795	1.6545	0.00086	1.0149	0.00052753	2.6694	0.0013875	519.7873552450392	13.086	0.37691	13.086	13.012	13.389	0					20	8	3	0	0	0	0.087582	1	3099	3099		82.305	11.009	1	833840			46686	22660	30944	31068	47277	47277					0.040675712309621304
VMVFYCPL	8	Unmodified	_VMVFYCPL_					0	0	0			REV__ENST00000504959.5_1_4:186260544-186290945:+|nuORF	REV__ENST00000504959.5_1_4:186260544-186290945:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2401428222656	2	486.240092	970.465632	0.64403	0.00031315	-0.44099	-0.00021443	0.20303	9.8723E-05	486.2398423448029	18.403	0.21693	18.403	18.344	18.561	0					11	4	4	0	0	0	0.63381	1	5655	5655		43.626	4.8199	1	915600	+		46687	13912	30945	31069	47278	47278					-0.020782301069175446
VMVMVNYIFF	10	Unmodified	_VMVMVNYIFF_					0	0	0		CON__Q9N2I2	CON__Q9N2I2	CON__Q9N2I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	631.8148803710938	2	631.819238	1261.62392	-2.1893	-0.0013832	-3.5376	-0.0022351	-5.7269	-0.0036184	632.3187591576506	29.706	0.15958	29.706	29.644	29.803	0					5	4	2	0	0	0	0.69166	1	10030	10030		23.042	0.46283	1	40107		+	46688	672	30946	31070	47279	47279					0.003576440814867965
VMVMYVDI	8	Unmodified	_VMVMYVDI_					0	0	0			REV__ENST00000548709.1_1_12:56490921-56492754:+|nuORF	REV__ENST00000548709.1_1_12:56490921-56492754:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.2430725097656	2	485.242832	968.471111	0.34742	0.00016858	-1.1952	-0.00057996	-0.84778	-0.00041138	485.2421912082674	27.699	0.18579	27.699	27.636	27.822	0					6	4	2	0	0	0	0.61433	1	9708	9708		46.766	0	1	53689	+		46689	13115	30947	31071	47280	47280					-0.014385513151069063
VMVTSGAVCI	10	Carbamidomethyl (C)	_VMVTSGAVC(Carbamidomethyl (C))I_	VMVTSGAVC(1)I		VMVTSGAVC(53)I		0	1	0			REV__nc|ENSG00000172548|Q0D2K0-2|NIPAL4	REV__nc|ENSG00000172548|Q0D2K0-2|NIPAL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.76025390625	2	518.76192	1035.50929	0.056428	2.9272E-05	-2.2715	-0.0011784	-2.2151	-0.0011491	518.7604470705865	30.018	0.24788	30.018	29.839	30.087	0					15	6	3	0	0	0	0.42631	1	10785	10785		53.351	12.573	1	152180	+		46690	16471	30948	31072	47281	47281	586				-0.0070466540043980785
VNAHSNILK	9	Unmodified	_VNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2848205566406	2	498.285266	994.555979	0.21836	0.00010881	-1.012	-0.00050426	-0.79362	-0.00039545	498.28489354682165	20.733	0.10651	20.733	20.669	20.776	0					5	3	2	0	0	0	0.13726	1	5611	5611		70.816	12.034	1	149560			46691	3774	30949	31073	47282	47282					0.05848278537371243
VNALNNNTTQ	10	Unmodified	_VNALNNNTTQ_					0	0	0		ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7720947265625	2	544.770177	1087.5258	3.703	0.0020173	0.23129	0.000126	3.9343	0.0021433	544.7701085113584	24.796	1.0014	24.796	24.447	25.448	0					48	20	3	0	0	0	0.21754	1	8584	8584		77.318	6.0219	1	17079000			46692	5423	30950	31074	47283	47283					-0.014461249184705594
VNAQPGRK	8	Unmodified	_VNAQPGRK_					0	0	0		ENST00000215061.8_1_19:17337016-17337903:+|nuORF	ENST00000215061.8_1_19:17337016-17337903:+|nuORF	ENST00000215061.8_1_19:17337016-17337903:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	435.2513732910156	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.354	1	46.354	45.854	46.854	0								0	0	0	1.7419	1	14823	14823		19.36	0	1				46693	8154	30951	31075	47284	47284					0.04839453677379879
VNAQSLVL	8	Unmodified	_VNAQSLVL_					0	0	0			REV__ENST00000419462.1_1_8:102381493-102381775:+|nuORF	REV__ENST00000419462.1_1_8:102381493-102381775:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	422.24969482421875	2	422.25036	842.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.654	1	26.654	26.154	27.154	0								0	0	0	1.7419	1	8408	8408		24.203	1.1603	1		+		46694	19060	30952	31076	47285	47285					0.05862399868760804
VNDGDMRLAD	10	Unmodified	_VNDGDMRLAD_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2522583007812	2	553.250763	1104.48697	1.6068	0.00088896	1.3538	0.00074901	2.9606	0.001638	553.251619093731	28.968	0.40862	28.968	28.661	29.07	0					15	8	3	0	0	0	0.3783	1	10687	10687		58.63	12.173	1	399980			46695	2545	30953	31077	47286	47286					-0.06109173544496116
VNELARTVQD	10	Unmodified	_VNELARTVQD_					0	0	0			REV__ENSG00000131495|ENST00000252102|NDUFA2	REV__ENSG00000131495|ENST00000252102|NDUFA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	572.802978515625	2	572.801477	1143.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.416	1	26.416	25.916	26.916	0								0	0	0	0.4201	1	9452	9452		16.717	1.0756	1		+		46696	14624	30954	31078	47287	47287					0.022350211497041528
VNGFGQKY	8	Unmodified	_VNGFGQKY_					0	0	0			REV__ENSG00000171564|ENST00000302068|FGB	REV__ENSG00000171564|ENST00000302068|FGB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.73193359375	2	456.732335	911.450116	-0.14555	-6.6479E-05	-0.42838	-0.00019565	-0.57393	-0.00026213	456.732079391827	27.445	0.41648	27.445	27.169	27.586	0					14	8	2	0	0	0	0.76283	1	9949	9949		25.45	0	1	116050	+		46697	16421	30955	31079	47288	47288					-0.009150573081114999
VNGHYSVI	8	Unmodified	_VNGHYSVI_					0	0	0			REV__nc|ENSG00000181026|Q8WTP8-2|AEN	REV__nc|ENSG00000181026|Q8WTP8-2|AEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	444.7317199707031	2	444.732335	887.450116	-0.29414	-0.00013082	-0.3276	-0.00014569	-0.62174	-0.00027651	444.732168571632	24.954	0.37457	24.954	24.851	25.226	0					29	11	4	0	0	0	0.52345	1	7490	7490		57.811	15.337	1	1306700	+		46698	21147	30956	31080	47289	47289					0.0018894269190923296
VNGLHSKIN	9	Unmodified	_VNGLHSKIN_					0	0	0			REV__nc|ENSG00000081154|Q8WW12-3|PCNP	REV__nc|ENSG00000081154|Q8WW12-3|PCNP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2778015136719	2	491.277441	980.540328	-0.52537	-0.0002581	0.85304	0.00041908	0.32768	0.00016098	491.27796769421377	28.808	0.45331	28.808	28.553	29.007	0					26	11	3	0	0	0	0.35021	1	10227	10227		45.972	1.5951	1	710470	+		46699	13303	30957	31081	47290	47290					0.04927992020327565
VNGPLNEAY	9	Unmodified	_VNGPLNEAY_					0	0	0			REV__nc|ENSG00000167615|Q96PV6-1|LENG8	REV__nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7400207519531	2	488.740357	975.46616	0.76308	0.00037295	-1.0529	-0.00051459	-0.2898	-0.00014164	488.7397937077966	29.575	0.29951	29.575	29.485	29.784	0					12	7	2	0	0	0	0.2873	1	10590	10590		51.335	0	1	462820	+		46700	16200	30958	31082	47291	47291					-0.02255395861868692
VNGPLNEAY	9	Unmodified	_VNGPLNEAY_					0	0	0			REV__nc|ENSG00000167615|Q96PV6-1|LENG8	REV__nc|ENSG00000167615|Q96PV6-1|LENG8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.7400817871094	2	488.740357	975.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.378	1	29.378	28.878	29.878	0								0	0	0	0.29774	1	9875	9875		35.618	0	1		+		46701	16200	30958	31082	47292	47292					-0.02255395861868692
VNGQEKYLI	9	Unmodified	_VNGQEKYLI_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000602564.5_1_16:722464-722707:+|nuORF;ENST00000561711.1_1_16:721970-722707:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.2926635742188	2	532.292756	1062.57096	1.7152	0.00091299	-1.1456	-0.00060979	0.56962	0.00030321	532.2923367422438	37.623	0.95394	37.623	37.328	38.282	0					58	31	4	0	0	0	0.18605	1	14694	14694		63.306	2.3343	1	1212200			46702	4416	30959	31083	47293	47293					0.04217725614716983
VNGQKGIPG	9	Unmodified	_VNGQKGIPG_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4;COL4A4|p.G1230Vfs*58|2|0.28|ENSG00000081052|chr2:227032170-227032170|C/-|frameshift_variant	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2455139160156	2	435.245609	868.476666	-0.6036	-0.00026272	-0.018303	-7.9663E-06	-0.62191	-0.00027068	435.2456472027236	33.602	0.19677	33.602	33.493	33.689	0					8	5	2	0	0	0	0.43426	1	11807	11807		38.806	3.1879	1	109090			46703	1653	30960	31084	47294	47294					0.037166315832337204
VNIVGDRP	8	Unmodified	_VNIVGDRP_					0	0	0			REV__ENST00000529993.5_1_11:68154039-68171824:+|nuORF	REV__ENST00000529993.5_1_11:68154039-68171824:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.2459716796875	2	435.245609	868.476666	2.6346	0.0011467	-3.1958	-0.001391	-0.56125	-0.00024428	435.2439798754154	33.76	0.22472	33.76	33.667	33.892	0					8	5	2	0	0	0	0.61925	1	12876	12876		45.972	1.4412	1	589260	+		46704	20037	30961	31085	47295	47295					0.037166315832337204
VNLAHKSY	8	Unmodified	_VNLAHKSY_					0	0	0			REV__ENSG00000151014|ENST00000280614|NOCT	REV__ENSG00000151014|ENST00000280614|NOCT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.2525939941406	2	466.253434	930.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.21	1	38.21	37.71	38.71	0								0	0	0	1.7419	1	14510	14510		26.796	0	1		+		46705	15463	30962	31086	47296	47296					0.024289181002814075
VNLDHPVIY	9	Unmodified	_VNLDHPVIY_					0	0	0		HGF|p.S486Y|1|0.36|ENSG00000019991|chr7:81710231-81710231|G/T|missense_variant	HGF|p.S486Y|1|0.36|ENSG00000019991|chr7:81710231-81710231|G/T|missense_variant	HGF|p.S486Y|1|0.36|ENSG00000019991|chr7:81710231-81710231|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2877807617188	2	535.287474	1068.5604	1.8071	0.0009673	-1.922	-0.0010288	-0.11494	-6.1524E-05	535.2863472123097	41.173	0.32854	41.173	41.014	41.343	0					28	14	3	0	0	0	0.42902	1	16157	16157		39.253	0.44669	1	411670			46706	11206	30963	31087	47297	47297					0.028857429603021956
VNLVPPSGPK	10	Unmodified	_VNLVPPSGPK_					0	0	0		ENST00000341084.6_1_8:101271265-101271364:-|nuORF	ENST00000341084.6_1_8:101271265-101271364:-|nuORF	ENST00000341084.6_1_8:101271265-101271364:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2973327636719	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.777	1	47.777	47.277	48.277	0								0	0	0	0.4162	1	19043	19043		25.574	1.3713	1				46707	8732	30964	31088	47298	47298					0.07810333339944009
VNNRKQVQV	9	Unmodified	_VNNRKQVQV_					0	0	0			REV__ENST00000477096.1_1_1:71530734-71530788:-|nuORF	REV__ENST00000477096.1_1_1:71530734-71530788:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.8146362304688	2	542.814722	1083.61489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.226	1	19.226	18.726	19.726	0								0	0	0	0.27939	1	5179	5179		31.955	6.3808	1		+		46708	19546	30965	31089	47299	47299					0.07642754831704224
VNPKAAII	8	Unmodified	_VNPKAAII_					0	0	0		tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2628173828125	2	413.263271	824.511988	0.1001	4.137E-05	-0.465	-0.00019217	-0.3649	-0.0001508	413.2630655610582	30.675	0.22687	30.675	30.594	30.821	0					14	6	3	0	0	0	0.74117	1	10465	10465		28.254	1.4582	1	531700			46709	22992	30966	31090	47300	47300					0.09271294111044881
VNPNSQTTL	9	Unmodified	_VNPNSQTTL_					0	0	0		ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2506408691406	2	487.251089	972.487624	-0.00366	-1.7833E-06	-0.76659	-0.00037352	-0.77025	-0.0003753	487.2507457380839	23.5	0.36666	23.5	23.324	23.691	0					35	12	4	0	0	0	0.51991	1	6774	6774		30.318	1.1477	1	491190			46710	193	30967	31091	47301	47301					0.0002798916684696451
VNQENLGLLV	10	Unmodified	_VNQENLGLLV_					0	0	0		ENST00000357250.10_1_6:70952402-70964697:-|nuORF	ENST00000357250.10_1_6:70952402-70964697:-|nuORF	ENST00000357250.10_1_6:70952402-70964697:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.3165893554688	2	549.811313	1097.60807	1.8227	0.0010022	2.8184	0.0015496	4.6412	0.0025518	549.8124801451554	28.352	0.86431	28.352	28.245	29.109	0					53	17	5	0	0	0	0.46215	1	10346	10346		49.442	14.29	1	3507800			46711	8819	30968	31092	47302	47302					0.06317397160455585
VNQHHPQNV	9	Unmodified	_VNQHHPQNV_					0	0	0			REV__ENSG00000128791|ENST00000262120|TWSG1	REV__ENSG00000128791|ENST00000262120|TWSG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.3179321289062	2	536.767771	1071.52099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.673	1	17.673	17.173	18.173	0								0	0	0	0.23459	1	5291	5291		45.952	5.8938	1		+		46712	14526	30969	31093	47303	47303					-0.011909642705859369
VNQVHEEFK	9	Unmodified	_VNQVHEEFK_					0	0	0			REV__ENST00000446006.1_1_7:64324607-64324745:+|nuORF	REV__ENST00000446006.1_1_7:64324607-64324745:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.2855834960938	2	565.285463	1128.55637	1.9062	0.0010776	-1.2833	-0.00072543	0.62293	0.00035214	565.2848422600346	26.819	0.11747	26.819	26.71	26.828	0					6	2	3	0	0	0	0.26904	1	9635	9635		53.351	0.41475	1	3287300	+		46713	19278	30970	31094	47304	47304					-0.002763465334282955
VNRKIGESYL	10	Unmodified	_VNRKIGESYL_					0	0	0			REV__tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	REV__tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.8304443359375	2	589.830037	1177.64552	0.10414	6.1423E-05	0.93933	0.00055405	1.0435	0.00061547	589.830908545641	23.144	0.19157	23.144	22.987	23.179	0					8	6	2	0	0	0	0.71484	1	6905	6905		19.997	1.7347	1	58900	+		46714	22117	30971	31095	47305	47305					0.06380488426111697
VNRPRNIMVY	10	Unmodified	_VNRPRNIMVY_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	631.844970703125	2	631.345332	1260.67611	-2.1856	-0.0013799	-1.707	-0.0010777	-3.8926	-0.0024575	631.3444740021238	32.026	0.29167	32.026	31.876	32.168	0					19	8	3	0	0	0	0.60076	1	11054	11054		34.173	2.5383	1	152350			46715	7478	30972	31096	47306	47306					0.056199435395001274
VNRYREKLKFL	11	Unmodified	_VNRYREKLKFL_					0	0	0			REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2948303222656	3	489.292782	1464.85652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.094	1	42.094	41.594	42.594	0								0	0	0	0.44222	1	15966	15966		27.644	14.136	1		+		46716	17091	30973	31097	47307	47307					0.14268365467978583
VNSGFAKRVR	10	Unmodified	_VNSGFAKRVR_					0	0	0		ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.33056640625	2	567.330539	1132.64652	0.4569	0.00025921	-0.74921	-0.00042505	-0.29231	-0.00016583	567.3299560008073	50.861	0.58895	50.861	50.595	51.184	0					46	36	2	0	0	0	0.74091	1	15217	15217		14.865	2.658	1	95720			46717	3229	30974	31098	47308	47308					0.08550747585650242
VNSSILQY	8	Unmodified	_VNSSILQY_					0	0	0		nc|ENSG00000164509|Q8NI17-6|IL31RA;nc|ENSG00000164509|Q8NI17-3|IL31RA;nc|ENSG00000164509|Q8NI17-5|IL31RA;nc|ENSG00000164509|Q8NI17|IL31RA;nc|ENSG00000164509|Q8NI17-12|IL31RA;ENSG00000164509|ENST00000652347|IL31RA;nc|ENSG00000164509|Q8NI17-7|IL31RA;nc|ENSG00000164509|Q8NI17-9|IL31RA;nc|ENSG00000164509|Q8NI17-10|IL31RA;nc|ENSG00000164509|Q8NI17-11|IL31RA	nc|ENSG00000164509|Q8NI17-6|IL31RA	nc|ENSG00000164509|Q8NI17-6|IL31RA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2456970214844	2	462.245275	922.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.415	1	39.415	38.915	39.915	0								0	0	0	1.7419	1	13251	13251		35.618	1.4457	1				46718	5700	30975	31099	47309	47309					0.011657921435244134
VNSVKIPV	8	Unmodified	_VNSVKIPV_					0	0	0		tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.26837158203125	2	428.268553	854.522553	-0.62855	-0.00026919	0.086234	3.6931E-05	-0.54232	-0.00023226	428.26852968234516	24.709	0.56208	24.709	24.34	24.902	0					28	13	3	0	0	0	0.58597	1	8355	8355		51.335	0	1	248500			46719	22599	30976	31100	47310	47310					0.0894727676546836
VNTAKENL	8	Unmodified	_VNTAKENL_					0	0	0			REV__ENSG00000000003|ENST00000373020|TSPAN6	REV__ENSG00000000003|ENST00000373020|TSPAN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.7424011230469	2	444.742899	887.471246	-2.794	-0.0012426	3.7906	0.0016858	0.99662	0.00044324	444.7447743579936	24.809	0.3738	24.809	24.579	24.953	0					13	8	2	0	0	0	0.50061	1	7805	7805		60.118	1.3363	1	98671	+		46720	12806	30977	31101	47311	47311					0.023009080007682314
VNVEINVAPGK	11	Unmodified	_VNVEINVAPGK_					0	0	0		ENSG00000171403|ENST00000246662|KRT9;CON__P35527	ENSG00000171403|ENST00000246662|KRT9	ENSG00000171403|ENST00000246662|KRT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	570.324951171875	2	570.324588	1138.63462	1.4631	0.00083443	-0.24216	-0.00013811	1.2209	0.00069632	570.3244880724668	32.144	0.10195	32.144	32.098	32.2	0					7	4	2	0	0	0	0.39748	1	10377	10377		66.962	29.803	1	44261		+	46721	644	30978	31102	47312	47312					0.07085086051779399
VNVEINVAPGK	11	Unmodified	_VNVEINVAPGK_					0	0	0		ENSG00000171403|ENST00000246662|KRT9;CON__P35527	ENSG00000171403|ENST00000246662|KRT9	ENSG00000171403|ENST00000246662|KRT9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	570.324462890625	2	570.324588	1138.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.185	1	32.185	31.685	32.685	0								0	0	0	0.20596	1	11165	11165		79.489	29.465	1			+	46722	644	30978	31102	47313	47313					0.07085086051779399
VNVNGQQIL	9	Unmodified	_VNVNGQQIL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11;ALG11|p.L133*|1|0.3|ENSG00000253710|chr13:52024122-52024122|T/-|frameshift_variant;ALG11|p.C345Lfs*3|1|0.4|ENSG00000253710|chr13:52024761-52024762|-/T|frameshift_variant	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.779052734375	2	492.777274	983.539994	2.7454	0.0013529	0.84257	0.0004152	3.588	0.0017681	492.77768785303584	41.789	0.14502	41.789	41.703	41.848	0					7	4	2	0	0	0	0.47038	1	16641	16641		35.618	1.4457	1	70149			46723	8000	30979	31103	47314	47314					0.04756572300470907
VNVTAQRHSSR	11	Unmodified	_VNVTAQRHSSR_					0	0	0			REV__CHD1|p.R233H|1|0.29|ENSG00000153922|chr5:98900972-98900972|C/T|missense_variant	REV__CHD1|p.R233H|1|0.29|ENSG00000153922|chr5:98900972-98900972|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	627.8378295898438	2	627.836717	1253.65888	1.272	0.0007986	0.92366	0.00057991	2.1957	0.0013785	627.8371311681922	33.451	0.67127	33.451	33.327	33.998	0					29	17	4	0	0	0	0.46959	1	12359	12359		46.457	6.3986	1	787770	+		46724	12452	30980	31104	47315	47315					0.04219739258019217
VNYKELLTV	9	Unmodified	_VNYKELLTV_					0	0	0			REV__tr|U7SF62|U7SF62_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02344PE=4SV=1	REV__tr|U7SF62|U7SF62_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02344PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.20941162109375	3	360.209613	1077.60701	0.48247	0.00017379	-0.54009	-0.00019455	-0.057616	-2.0754E-05	360.20934479403724	28.882	0.1715	28.882	28.796	28.968	0					7	4	2	0	0	0	0.42902	1	10264	10264		39.253	0	1	224030	+		46725	21674	30981	31105	47316	47316					0.0713118279156788
VNYVKKIY	8	Unmodified	_VNYVKKIY_					0	0	0			REV__tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	REV__tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.8021240234375	2	513.80276	1025.59097	3.1809	0.0016343	-3.0075	-0.0015453	0.17337	8.908E-05	513.8011116055163	46.951	0.097206	46.951	46.903	47	0					6	4	2	0	0	0	0.74117	1	18782	18782		28.254	0	1	48952	+		46726	22003	30982	31106	47317	47317					0.0791952134532039
VPAAASKISM	10	Unmodified	_VPAAASKISM_					0	0	0		ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant	ENSG00000130640|ENST00000252936|TUBGCP2	ENSG00000130640|ENST00000252936|TUBGCP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7711486816406	2	487.770603	973.526652	0.39643	0.00019337	0.68546	0.00033435	1.0819	0.00052771	487.7710397398903	29.305	0.1333	29.305	29.218	29.351	0					5	3	2	0	0	0	0.44292	1	10460	10460		51.528	12.506	1	52055			46727	3656	30983	31107	47318	47318					0.03882998196877452
VPAAPSPG	8	Unmodified	_VPAAPSPG_					0	0	0		ENST00000535420.5_1_1:154989902-154990361:+|nuORF	ENST00000535420.5_1_1:154989902-154990361:+|nuORF	ENST00000535420.5_1_1:154989902-154990361:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.1891784667969	2	348.189771	694.36499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.803	1	12.803	12.303	13.303	0								0	0	0	1.7419	1	2970	2970		15.636	0	1				46728	10480	30984	31108	47319	47319					0.005581972260984003
VPADAVVQY	9	Unmodified	_VPADAVVQY_					0	0	0		ENSG00000134285|ENST00000550765|FKBP11;ENST00000546847.5_1_12:49315769-49317670:-|nuORF	ENSG00000134285|ENST00000550765|FKBP11	ENSG00000134285|ENST00000550765|FKBP11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.2537536621094	2	481.2531	960.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.601	1	37.601	37.101	38.101	0								0	0	0	0.3368	1	12310	12310		27.882	1.0861	1				46729	3909	30985	31109	47320	47320					0.009820786605587273
VPADAVVQY	9	Unmodified	_VPADAVVQY_					0	0	0		ENSG00000134285|ENST00000550765|FKBP11;ENST00000546847.5_1_12:49315769-49317670:-|nuORF	ENSG00000134285|ENST00000550765|FKBP11	ENSG00000134285|ENST00000550765|FKBP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2536315917969	2	481.2531	960.491647	0.40703	0.00019589	-0.51944	-0.00024998	-0.11241	-5.4096E-05	481.25286242649366	37.804	0.36386	37.804	37.68	38.044	0					22	14	2	0	0	0	0.2873	1	14327	14327		51.335	19.381	1	226630			46730	3909	30985	31109	47321	47321					0.009820786605587273
VPADTKLSK	9	Unmodified	_VPADTKLSK_					0	0	0		nc|ENSG00000164107|P61296-2|HAND2;ENSG00000113196|ENST00000231121|HAND1;ENSG00000164107|ENST00000359562|HAND2	nc|ENSG00000164107|P61296-2|HAND2	nc|ENSG00000164107|P61296-2|HAND2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.7820739746094	2	479.782025	957.549496	0.46518	0.00022318	-0.79348	-0.0003807	-0.3283	-0.00015751	479.781803162816	26.105	0.14009	26.105	26.014	26.154	0					5	3	2	0	0	0	0.47038	1	8972	8972		35.618	0	1	72042			46731	2783	30986	31110	47322	47322					0.0690234058599799
VPAEHQVAM	9	Unmodified	_VPAEHQVAM_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2452697753906	2	491.244752	980.474951	-0.14518	-7.1317E-05	0.38408	0.00018868	0.23891	0.00011736	491.24523111251887	24.437	0.19359	24.437	24.396	24.59	0					8	5	2	0	0	0	0.4966	1	7226	7226		32.812	2.3088	1	62590			46732	7406	30987	31111	47323	47323					-0.0160674549703117
VPAEHQVAM	9	Unmodified	_VPAEHQVAM_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.244873046875	2	491.244752	980.474951	0.80936	0.00039759	-0.55408	-0.00027219	0.25528	0.00012541	491.2448196225331	24.749	0.37688	24.749	24.615	24.992	0					25	9	4	0	0	0	0.21263	1	8361	8361		60.118	8.7828	1	656250			46733	7406	30987	31111	47324	47324					-0.0160674549703117
VPAEHQVAM	9	Unmodified	_VPAEHQVAM_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.24462890625	2	491.244752	980.474951	0.58516	0.00028745	-0.28691	-0.00014094	0.29824	0.00014651	491.24428244388696	24.708	0.5611	24.708	24.447	25.008	0					24	11	3	0	0	0	0.098791	1	8690	8690		79.713	31.797	1	778260			46734	7406	30987	31111	47325	47325					-0.0160674549703117
VPAEHQVAM	9	Unmodified	_VPAEHQVAM_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.2456970214844	2	491.244752	980.474951	-0.078524	-3.8575E-05	0.51216	0.00025159	0.43363	0.00021302	491.2449090415333	24.539	0.2342	24.539	24.467	24.701	0					8	5	2	0	0	0	0.40353	1	7663	7663		41.427	7.2541	1	105470			46735	7406	30987	31111	47326	47326					-0.0160674549703117
VPAEHQVAM	9	Unmodified	_VPAEHQVAM_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2446594238281	2	491.244752	980.474951	0.8045	0.0003952	-1.1913	-0.00058523	-0.38682	-0.00019002	491.244347996682	24.669	0.59788	24.669	24.414	25.012	0					29	12	4	0	0	0	0.087861	1	8551	8551		82.241	29.941	1	1033300			46736	7406	30987	31111	47327	47327					-0.0160674549703117
VPAKSDVY	8	Unmodified	_VPAKSDVY_					0	0	0		PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant;ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant	PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.73388671875	2	439.734543	877.454533	-0.028294	-1.2442E-05	-1.1351	-0.00049914	-1.1634	-0.00051158	439.7342518874518	22.116	0.35061	22.116	21.932	22.282	0					10	8	2	0	0	0	0.65148	1	7095	7095		40.778	11.629	1	49343			46737	7493	30988	31112	47328	47328					0.010904071148047478
VPALVTSQK	9	Unmodified	_VPALVTSQK_					0	0	0			REV__ENSG00000134453|ENST00000379888|RBM17	REV__ENSG00000134453|ENST00000379888|RBM17	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7840881347656	2	471.784567	941.554582	-0.78285	-0.00036934	0.567	0.0002675	-0.21586	-0.00010184	471.78454980178026	17.504	0.15918	17.504	17.405	17.564	0					10	5	2	0	0	0	0.53083	1	4374	4374		29.15	1.2673	1	109880	+		46738	14745	30989	31113	47329	47329					0.0814664444861819
VPASLTTKY	9	Unmodified	_VPASLTTKY_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant;UBN2|p.K315Efs*5|1|0.25|ENSG00000157741|chr7:139261280-139261281|-/A|frameshift_variant;UBN2|p.K314Rfs*11|1|0.15|ENSG00000157741|chr7:139261281-139261281|A/-|frameshift_variant;UBN2|p.K542Nfs*2|1|0.14|ENSG00000157741|chr7:139272347-139272347|A/-|frameshift_variant;UBN2|p.L543Tfs*6|1|0.38|ENSG00000157741|chr7:139272346-139272347|-/A|frameshift_variant;UBN1|p.R716Gfs*129|1|0.3|ENSG00000118900|chr16:4874551-4874551|A/-|frameshift_variant;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000118900|ENST00000262376|UBN1	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.2763366699219	2	490.276575	978.538597	0.81181	0.00039801	-1.6546	-0.0008112	-0.84277	-0.00041319	490.2756528545717	29.174	0.33151	29.174	29.046	29.377	0					20	8	3	0	0	0	0.24334	1	10404	10404		56.434	3.0823	1	269940			46739	5229;3087	30990	31114	47330	47330					0.04846938211710494
VPASLTTKY	9	Unmodified	_VPASLTTKY_					0	0	0		UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant;UBN2|p.K315Efs*5|1|0.25|ENSG00000157741|chr7:139261280-139261281|-/A|frameshift_variant;UBN2|p.K314Rfs*11|1|0.15|ENSG00000157741|chr7:139261281-139261281|A/-|frameshift_variant;UBN2|p.K542Nfs*2|1|0.14|ENSG00000157741|chr7:139272347-139272347|A/-|frameshift_variant;UBN2|p.L543Tfs*6|1|0.38|ENSG00000157741|chr7:139272346-139272347|-/A|frameshift_variant;UBN1|p.R716Gfs*129|1|0.3|ENSG00000118900|chr16:4874551-4874551|A/-|frameshift_variant;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000118900|ENST00000262376|UBN1	UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.27606201171875	2	490.276575	978.538597	-0.11735	-5.7533E-05	-0.35084	-0.00017201	-0.46819	-0.00022954	490.2760144514324	28.927	0.22788	28.927	28.836	29.064	0					8	5	2	0	0	0	0.28897	1	9681	9681		51.193	15.992	1	115150			46740	5229;3087	30990	31114	47331	47331					0.04846938211710494
VPASPLPGLE	10	Unmodified	_VPASPLPGLE_					0	0	0		ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;MARK2|p.T549Rfs*67|2|0.4|ENSG00000072518|chr11:63904110-63904110|C/-|frameshift_variant;MARK2|p.Q563Sfs*53|1|0.41|ENSG00000072518|chr11:63904791-63904791|C/-|frameshift_variant;ENST00000535116.1_1_11:63670194-63670631:+|nuORF	ENSG00000072518|ENST00000402010|MARK2	ENSG00000072518|ENST00000402010|MARK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2764892578125	2	490.276575	978.538597	-1.2562	-0.00061588	0.34207	0.00016771	-0.91412	-0.00044817	490.27660873442153	28.882	0.24572	28.882	28.798	29.043	0					14	9	2	0	0	0	0.47859	1	9350	9350		47.657	1.6851	1	92267			46741	1494	30991	31115	47332	47332					0.048469382116991255
VPCWQSYPKG	10	Unmodified	_VPCWQSYPKG_					0	0	0		ENST00000481445.1_1_X:77158242-77160802:+|nuORF	ENST00000481445.1_1_X:77158242-77160802:+|nuORF	ENST00000481445.1_1_X:77158242-77160802:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.7805786132812	2	582.778959	1163.54336	1.6377	0.00095442	0.82529	0.00048096	2.463	0.0014354	582.7793576838901	20.941	0.41834	20.941	20.675	21.093	0					28	8	5	0	0	0	0.12896	1	6722	6722		90.37	90.37	1	1753800			46742	9958	30992	31116	47333	47333					-0.0318650091719519
VPDLVHVM	8	Unmodified	_VPDLVHVM_					0	0	0		nc|ENSG00000100614|P35813-3|PPM1A;PPM1A|p.R335H|1|0.37|ENSG00000100614|chr14:60289857-60289857|G/A|missense_variant;ENSG00000100614|ENST00000395076|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.2464904785156	2	455.246763	908.478974	0.72764	0.00033126	-0.65904	-0.00030003	0.068597	3.1229E-05	455.2464507062365	42.146	0.18655	42.146	42.084	42.27	0					15	9	2	0	0	0	0.4723	1	15985	15985		62.978	27.778	1	72745			46743	11460	30993	31117	47334	47334					0.021073439966812657
VPDLVHVM	8	Unmodified	_VPDLVHVM_					0	0	0		nc|ENSG00000100614|P35813-3|PPM1A;PPM1A|p.R335H|1|0.37|ENSG00000100614|chr14:60289857-60289857|G/A|missense_variant;ENSG00000100614|ENST00000395076|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2469787597656	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.146	1	42.146	41.646	42.646	0								0	0	0	1.7419	1	16552	16552		52.299	15.271	1				46744	11460	30993	31117	47335	47335					0.021073439966812657
VPDLVHVM	8	Unmodified	_VPDLVHVM_					0	0	0		nc|ENSG00000100614|P35813-3|PPM1A;PPM1A|p.R335H|1|0.37|ENSG00000100614|chr14:60289857-60289857|G/A|missense_variant;ENSG00000100614|ENST00000395076|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	nc|ENSG00000100614|P35813-3|PPM1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.2462158203125	2	455.246763	908.478974	0.87841	0.00039989	-2.3246	-0.0010583	-1.4462	-0.00065837	455.2459974272247	42.098	0.24869	42.098	41.981	42.229	0					14	6	3	0	0	0	0.28675	1	16776	16776		86.935	42.404	1	182930			46745	11460	30993	31117	47336	47336					0.021073439966812657
VPDPLRLTP	9	Unmodified	_VPDPLRLTP_					0	0	0		ENST00000438934.5_2_22:18958062-18975611:+|nuORF;ENST00000440005.6_2_22:18958062-18978324:+|nuORF	ENST00000438934.5_2_22:18958062-18975611:+|nuORF	ENST00000438934.5_2_22:18958062-18975611:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.53350830078125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.944	1	32.944	32.444	33.444	0								0	0	0	0.34907	1	11029	11029		19.104	3.0967	1				46746	9553	30994	31118	47337	47337					0.0781033333993264
VPDPRAVYCK	10	Carbamidomethyl (C)	_VPDPRAVYC(Carbamidomethyl (C))K_	VPDPRAVYC(1)K		VPDPRAVYC(72)K		0	1	0		ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.81591796875	2	602.81079	1203.60703	3.0599	0.0018445	4.2012	0.0025325	7.261	0.004377	602.8133010370191	18.922	0.88932	18.922	18.784	19.673	0					33	18	4	0	0	0	0.26198	1	5768	5768		71.877	34.718	1	837190			46747	7630	30995	31119	47338	47338	328				0.013368595198926414
VPDQNSKQL	9	Unmodified	_VPDQNSKQL_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3;PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant;PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7798461914062	2	514.772188	1027.52982	3.2373	0.0016665	2.2077	0.0011365	5.445	0.0028029	514.7721485933768	21.942	0.46349	21.942	21.807	22.27	0					19	9	4	0	0	0	0.30951	1	7199	7199		49.442	10.635	1	1918100			46748	3076	30996	31120	47339	47339					0.017159645752371944
VPDSGTGPSL	10	Unmodified	_VPDSGTGPSL_					0	0	0		ENST00000270328.8_1_19:8660697-8660772:-|nuORF	ENST00000270328.8_1_19:8660697-8660772:-|nuORF	ENST00000270328.8_1_19:8660697-8660772:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2327575683594	2	465.232364	928.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.229	1	52.229	51.729	52.729	0								0	0	0	0.40862	1	20319	20319		27.882	3.3782	1				46749	8377	30997	31121	47340	47340					-0.01691102098743613
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.8131103515625	2	585.311677	1168.6088	1.5084	0.00088291	-0.34671	-0.00020294	1.1617	0.00067997	585.3113680996913	33.96	0.59033	33.96	33.658	34.249	0					31	24	2	0	0	0	0.6208	1	11041	11041		35.178	2.3658	1	74815			46750	5762	30998	31122	47341	47341					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	585.3123168945312	2	585.311677	1168.6088	1.1866	0.00069452	-0.71487	-0.00041842	0.47171	0.0002761	585.3112709088683	34.226	1.0527	34.226	33.806	34.859	0					67	27	4	0	0	0	0.11154	2	12809	12639;12809		86.882	35.689	1	437350			46751	5762	30998	31122	47342;47343	47343					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	585.8135375976562	2	585.311677	1168.6088	-0.29336	-0.00017171	0.67051	0.00039246	0.37715	0.00022075	585.3120272839548	34.03	0.80517	34.03	33.65	34.455	0					75	33	3	0	0	0	0.42065	1	11503	11503		50.034	18.504	1	140290			46752	5762	30998	31122	47344	47344					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.3125610351562	2	585.311677	1168.6088	1.4038	0.00082167	-0.63804	-0.00037345	0.76577	0.00044822	585.3114083307369	34.148	1.1345	34.148	33.799	34.933	0					83	29	4	0	0	0	0.12878	2	13236	13057;13236		82.831	41.404	1	1200300			46753	5762	30998	31122	47345;47346	47346					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	585.3112182617188	2	585.311677	1168.6088	0.54892	0.00032129	-0.28661	-0.00016776	0.26231	0.00015353	585.3115019430857	33.952	0.79076	33.952	33.569	34.36	0					49	23	3	0	0	0	0.67983	2	12029	11872;12029		29.551	10.447	1	184020			46754	5762	30998	31122	47347;47348	47348					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	585.311767578125	2	585.311677	1168.6088	1.5202	0.00088978	-0.96502	-0.00056484	0.55517	0.00032495	585.3111128892315	34.144	1.017	34.144	33.767	34.784	0					73	21	4	0	0	0	0.040365	2	13139	12949;13139		109.83	53.396	1	1537400			46755	5762	30998	31122	47349;47350	47350					0.031241918095247456
VPEARGAAGP	10	Unmodified	_VPEARGAAGP_					0	0	0		ENST00000515008.1_1_5:138283142-138289110:-|nuORF	ENST00000515008.1_1_5:138283142-138289110:-|nuORF	ENST00000515008.1_1_5:138283142-138289110:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7483825683594	2	462.748516	923.482479	0.6827	0.00031592	-1.0512	-0.00048643	-0.36848	-0.00017051	462.74809331145485	22.257	0.14182	22.257	22.165	22.307	0					6	3	2	0	0	0	0.54197	1	7216	7216		40.778	3.6191	1	370190			46756	10262	30999	31123	47351	47351					0.01767730094900344
VPEEGGATHVY	11	Unmodified	_VPEEGGATHVY_					0	0	0		nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1;ENSG00000166452|ENST00000309377|AKIP1	nc|ENSG00000166452|Q9NQ31-3|AKIP1	nc|ENSG00000166452|Q9NQ31-3|AKIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	579.7749633789062	2	579.774928	1157.5353	1.4924	0.00086528	-0.88372	-0.00051236	0.60873	0.00035293	579.7743645381189	26.225	0.54826	26.225	26.086	26.634	0					39	18	3	0	0	0	0.063521	1	7901	7901		98.629	50.67	1	240210			46757	5905	31000	31124	47352	47352					-0.03716356632935458
VPEEGGATHVY	11	Unmodified	_VPEEGGATHVY_					0	0	0		nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1;ENSG00000166452|ENST00000309377|AKIP1	nc|ENSG00000166452|Q9NQ31-3|AKIP1	nc|ENSG00000166452|Q9NQ31-3|AKIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.2763671875	2	579.774928	1157.5353	-0.089469	-5.1872E-05	0.33842	0.00019621	0.24895	0.00014434	579.7751659179709	26.193	0.61015	26.193	26.057	26.667	0					44	20	3	0	0	0	0.1082	2	8181	8181;8333		87.696	48.943	1	548010			46758	5905	31000	31124	47353;47354	47353					-0.03716356632935458
VPEEGGATHVY	11	Unmodified	_VPEEGGATHVY_					0	0	0		nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1;ENSG00000166452|ENST00000309377|AKIP1	nc|ENSG00000166452|Q9NQ31-3|AKIP1	nc|ENSG00000166452|Q9NQ31-3|AKIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.7753295898438	2	579.774928	1157.5353	0.57753	0.00033484	0.14083	8.1649E-05	0.71836	0.00041649	579.775005476081	26.278	0.58244	26.278	26.121	26.704	0					31	13	3	0	0	0	0.00092062	1	8416	8416		134.81	73.839	1	403860			46759	5905	31000	31124	47355	47355					-0.03716356632935458
VPEEKAAEL	9	Unmodified	_VPEEKAAEL_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;TBC1D23|p.A351Ifs*23|1|0.05|ENSG00000036054|chr3:100299289-100299290|-/ATTCACA|frameshift_variant;ENST00000484231.1_1_3:99998514-100002656:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2633972167969	2	493.263665	984.512776	0.5032	0.00024821	-0.5956	-0.00029379	-0.092392	-4.5574E-05	493.26331687731556	26.646	0.32801	26.646	26.547	26.875	0					18	7	3	0	0	0	0.070005	1	9209	9209		88.177	11.403	1	493740			46760	1171	31001	31125	47356	47356					0.01990043969431099
VPEEKAAEL	9	Unmodified	_VPEEKAAEL_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;TBC1D23|p.A351Ifs*23|1|0.05|ENSG00000036054|chr3:100299289-100299290|-/ATTCACA|frameshift_variant;ENST00000484231.1_1_3:99998514-100002656:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2634582519531	2	493.263665	984.512776	-0.051651	-2.5477E-05	-0.56225	-0.00027734	-0.6139	-0.00030281	493.263468372	26.685	0.51337	26.685	26.526	27.039	0					23	10	3	0	0	0	0.25761	1	9566	9566		54.722	5.2808	1	584070			46761	1171	31001	31125	47357	47357					0.01990043969431099
VPENTMHAM	9	Unmodified	_VPENTMHAM_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.228515625	2	515.228245	1028.44194	1.1962	0.00061634	-1.4411	-0.00074247	-0.24482	-0.00012614	515.2278377949036	25.667	0.71821	25.667	25.541	26.259	0					27	15	3	0	0	0	0.35021	1	8814	8814		45.972	11.8	1	232440			46762	1482	31002	31126	47358	47358					-0.07114695611403477
VPESSLAGHSF	11	Unmodified	_VPESSLAGHSF_					0	0	0		nc|ENSG00000184900|P55854-2|SUMO3;ENST00000397898.7_1_21:46226868-46228953:-|nuORF;ENSG00000184900|ENST00000332859|SUMO3	nc|ENSG00000184900|P55854-2|SUMO3	nc|ENSG00000184900|P55854-2|SUMO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.77783203125	2	565.77747	1129.54039	1.9139	0.0010828	-1.0933	-0.00061857	0.82055	0.00046425	565.7769700343346	33.394	0.35785	33.394	33.296	33.654	0					20	8	3	0	0	0	0.0010836	1	12791	12791		132.76	88.381	1	382080			46763	11682	31003	31127	47359	47359					-0.019200527703333137
VPESSLAGHSF	11	Unmodified	_VPESSLAGHSF_					0	0	0		nc|ENSG00000184900|P55854-2|SUMO3;ENST00000397898.7_1_21:46226868-46228953:-|nuORF;ENSG00000184900|ENST00000332859|SUMO3	nc|ENSG00000184900|P55854-2|SUMO3	nc|ENSG00000184900|P55854-2|SUMO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.77783203125	2	565.77747	1129.54039	1.7059	0.00096514	-0.91563	-0.00051804	0.79023	0.00044709	565.7769517919459	33.339	0.41853	33.339	33.232	33.65	0					25	8	4	0	0	0	0.024389	1	12677	12677		117.81	59.029	1	632220			46764	11682	31003	31127	47360	47360					-0.019200527703333137
VPESSVLSPA	10	Unmodified	_VPESSVLSPA_					0	0	0			REV__ENST00000434116.6_1_15:65903875-65903989:+|nuORF	REV__ENST00000434116.6_1_15:65903875-65903989:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2633361816406	2	493.263665	984.512776	-0.61573	-0.00030372	-0.31186	-0.00015383	-0.92759	-0.00045755	493.2638131335332	26.61	0.46758	26.61	26.451	26.919	0					24	9	5	0	0	0	0.37692	1	9436	9436		58.782	9.3404	1	386510	+		46765	19190	31004	31128	47361	47361					0.019900439694424676
VPESTIIDAT	10	Unmodified	_VPESTIIDAT_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.2747802734375	2	523.274229	1044.53391	0.36707	0.00019208	0.18632	9.7497E-05	0.55339	0.00028957	523.2742914810187	36.021	0.50882	36.021	35.851	36.36	0					54	23	4	0	0	0	0.73697	1	12301	12301		15.642	0	1	1734000	+		46766	21244	31005	31129	47362	47362					0.01342009278300793
VPFANKSLLK	10	Unmodified	_VPFANKSLLK_					0	0	0			REV__GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant	REV__GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.896484375	3	372.89737	1115.67028	-0.11971	-4.4641E-05	-3.0872	-0.0011512	-3.2069	-0.0011959	372.89628071008855	14.595	0.16736	14.595	14.529	14.696	0					8	6	2	0	0	0	0.58308	1	3106	3106		36.318	0	1	84786	+		46767	13864	31006	31130	47363	47363					0.1170716829947196
VPFHSDLGY	9	Unmodified	_VPFHSDLGY_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7508544921875	2	517.750724	1033.4869	1.542	0.00079839	0.95121	0.00049249	2.4932	0.0012909	517.7501793445223	37	0.47261	37	36.831	37.304	0					26	14	2	0	0	0	0.1236	1	14438	14438		73.975	33.402	1	429560			46768	2085	31007	31131	47364	47364					-0.028508054821941187
VPFHSDLGY	9	Unmodified	_VPFHSDLGY_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7509155273438	2	517.750724	1033.4869	1.5663	0.00081096	2.1367	0.0011063	3.703	0.0019172	517.7501988816587	36.937	0.70899	36.937	36.462	37.171	0					30	14	3	0	0	0	0.14734	1	14401	14401		68.485	16.186	1	758540			46769	2085	31007	31131	47365	47365					-0.028508054821941187
VPGEVEMVK	9	Unmodified	_VPGEVEMVK_					0	0	0		nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000102882|P27361-2|MAPK3	nc|ENSG00000102882|P27361-2|MAPK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2642517089844	2	494.26261	986.510668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.633	1	28.633	28.133	29.133	0								0	0	0	0.2591	1	10513	10513		42.396	1.618	1				46770	2196	31008	31132	47366	47366					0.016872919599791203
VPGGVDLLTL	10	Unmodified	_VPGGVDLLTL_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;DENND3|p.L310Sfs*31|1|0.4|ENSG00000105339|chr8:141155938-141155938|C/-|frameshift_variant;nc|ENSG00000105339|A2RUS2-4|DENND3;ENST00000518198.1_1_8:142138775-142151424:+|nuORF	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.292724609375	2	492.292225	982.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.01	1	35.01	34.51	35.51	0								0	0	0	0.35368	1	11468	11468		42.396	5.3677	1				46771	2345	31009	31133	47367	47367					0.07791511245807214
VPGGVQAR	8	Unmodified	_VPGGVQAR_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2283020019531	2	392.22722	782.439886	0.43344	0.00017001	2.7094	0.0010627	3.1428	0.0012327	392.2280878658413	30.327	0.19954	30.327	30.249	30.448	0					6	4	2	0	0	0	0.7914	1	11343	11343		14.664	0	1	113110			46772	5471	31010	31134	47368	47368					0.039963797573250304
VPGHRKGG	8	Unmodified	_VPGHRKGG_					0	0	0		ENST00000456159.1_1_7:116312547-116335818:+|nuORF	ENST00000456159.1_1_7:116312547-116335818:+|nuORF	ENST00000456159.1_1_7:116312547-116335818:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.2326354980469	2	404.232836	806.45112	-0.47724	-0.00019292	0.46062	0.0001862	-0.016623	-6.7195E-06	404.2328935673717	47.801	0.35717	47.801	47.692	48.05	0					53	22	3	0	0	0	0.79176	1	17469	17469		21.702	2.3424	1	530820			46773	9685	31011	31135	47369	47369					0.040152018514731935
VPGSTPKLSF	10	Unmodified	_VPGSTPKLSF_					0	0	0			REV__ENSG00000112299|ENST00000367928|VNN1	REV__ENSG00000112299|ENST00000367928|VNN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.792236328125	2	516.78985	1031.56515	1.5396	0.00079566	3.8607	0.0019952	5.4003	0.0027908	516.7917975857788	38.015	0.53766	38.015	37.501	38.039	0					17	11	3	0	0	0	0.39566	1	14884	14884		56.721	1.9447	1	247230	+		46774	14000	31012	31136	47370	47370					0.050626271030296266
VPGTRTCP	8	Unmodified	_VPGTRTCP_					0	0	0			REV__OSR2|p.Y58Ifs*79|1|0.45|ENSG00000164920|chr8:98949120-98949120|G/-|frameshift_variant	REV__OSR2|p.Y58Ifs*79|1|0.45|ENSG00000164920|chr8:98949120-98949120|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.7127990722656	2	415.713088	829.411622	-0.17047	-7.0866E-05	-0.40389	-0.0001679	-0.57436	-0.00023877	415.71296173115803	20.275	0.17218	20.275	20.208	20.381	0					11	5	3	0	0	0	0.57802	1	5390	5390		52.299	4.3836	1	705350	+		46775	21331	31013	31137	47371	47371					-0.009906862142770478
VPGTRTCP	8	Unmodified	_VPGTRTCP_					0	0	0			REV__OSR2|p.Y58Ifs*79|1|0.45|ENSG00000164920|chr8:98949120-98949120|G/-|frameshift_variant	REV__OSR2|p.Y58Ifs*79|1|0.45|ENSG00000164920|chr8:98949120-98949120|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.7131652832031	2	415.713088	829.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.534	1	20.534	20.034	21.034	0								0	0	0	1.7419	1	6669	6669		53.351	3.3269	1		+		46776	21331	31013	31137	47372	47372					-0.009906862142770478
VPHAAEPGYL	10	Unmodified	_VPHAAEPGYL_					0	0	0		nc|ENSG00000253953|Q9UN71-2|PCDHGB4;ENSG00000253953|ENST00000519479|PCDHGB4	nc|ENSG00000253953|Q9UN71-2|PCDHGB4	nc|ENSG00000253953|Q9UN71-2|PCDHGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.85040283203125	3	351.850308	1052.5291	-0.70275	-0.00024726	0.5508	0.0001938	-0.15195	-5.3464E-05	351.85051909405905	24.281	0.20454	24.281	24.17	24.374	0					13	6	3	0	0	0	0.71807	1	7400	7400		12.812	12.812	1	200850			46777	8004	31014	31138	47373	47373					0.004931699261760514
VPHSIINGY	9	Unmodified	_VPHSIINGY_					0	0	0		nc|ENSG00000089157|P05388-2|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0	nc|ENSG00000089157|P05388-2|RPLP0	nc|ENSG00000089157|P05388-2|RPLP0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.2663269042969	2	500.266542	998.51853	-0.048082	-2.4054E-05	-0.37739	-0.00018879	-0.42547	-0.00021285	500.2664793875867	33.891	0.35744	33.891	33.802	34.16	0					34	15	3	0	0	0	0.032656	1	11045	11045		106.42	26.964	1	480230			46778	1803	31015	31139	47374	47374					0.01921187271773306
VPHSIINGY	9	Unmodified	_VPHSIINGY_					0	0	0		nc|ENSG00000089157|P05388-2|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0	nc|ENSG00000089157|P05388-2|RPLP0	nc|ENSG00000089157|P05388-2|RPLP0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.266357421875	2	500.266542	998.51853	-0.16007	-8.008E-05	-0.19572	-9.7914E-05	-0.3558	-0.00017799	500.2664825150351	34.141	0.54654	34.141	34.026	34.573	0					33	14	4	0	0	0	0.0062933	1	12676	12676		152.47	86.041	1	2900600			46779	1803	31015	31139	47375	47375					0.01921187271773306
VPHSIINGY	9	Unmodified	_VPHSIINGY_					0	0	0		nc|ENSG00000089157|P05388-2|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0	nc|ENSG00000089157|P05388-2|RPLP0	nc|ENSG00000089157|P05388-2|RPLP0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.2663879394531	2	500.266542	998.51853	-1.0156	-0.00050806	0.81865	0.00040954	-0.19694	-9.8521E-05	500.26692296008304	33.994	0.34151	33.994	33.864	34.206	0					26	14	2	0	0	0	0.071197	1	11418	11418		87.754	10.908	1	356220			46780	1803	31015	31139	47376	47376					0.01921187271773306
VPHTNPPEY	9	Unmodified	_VPHTNPPEY_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.2550048828125	2	527.253631	1052.49271	0.57585	0.00030362	0.60676	0.00031992	1.1826	0.00062354	527.2539533110041	25.037	0.20982	25.037	24.909	25.119	0					14	6	3	0	0	0	0.24095	1	7466	7466		56.721	9.9546	1	102070			46781	6662	31016	31140	47377	47377					-0.031437069705361864
VPHTNPPEY	9	Unmodified	_VPHTNPPEY_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.2540283203125	2	527.253631	1052.49271	0.10415	5.4914E-05	0.54538	0.00028755	0.64953	0.00034247	527.2540596176435	25.284	0.3214	25.284	25.132	25.454	0					20	7	4	0	0	0	0.15163	1	8630	8630		67.494	12.717	1	722820			46782	6662	31016	31140	47378	47378					-0.031437069705361864
VPHTNPPEY	9	Unmodified	_VPHTNPPEY_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2539672851562	2	527.253631	1052.49271	0.28443	0.00014997	0.19146	0.00010095	0.47589	0.00025092	527.2536396843478	25.282	0.27015	25.282	25.122	25.392	0					12	5	3	0	0	0	0.07136	1	8944	8944		87.696	27.402	1	244000			46783	6662	31016	31140	47379	47379					-0.031437069705361864
VPHTNPPEY	9	Unmodified	_VPHTNPPEY_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2540283203125	2	527.253631	1052.49271	-1.2047	-0.00063518	2.3361	0.0012317	1.1314	0.00059654	527.2549354912715	25.154	0.22455	25.154	24.986	25.21	0					8	5	2	0	0	0	0.27249	1	7951	7951		52.937	23.787	1	106910			46784	6662	31016	31140	47380	47380					-0.031437069705361864
VPIFVAPK	8	Unmodified	_VPIFVAPK_					0	0	0			REV__ENSG00000150990|ENST00000308736|DHX37	REV__ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.276123046875	2	435.776014	869.537475	-3.0223	-0.0013171	-1.4952	-0.00065156	-4.5175	-0.0019686	435.77538202853606	16.065	0.23792	16.065	15.862	16.099	0					14	8	2	0	0	0	0.67475	1	3690	3690		37.028	37.028	1	143010	+		46785	15459	31017	31141	47381	47381					0.09748768633460259
VPILVELDGD	10	Unmodified	_VPILVELDGD_					0	0	0		CON__Q9U6Y5	CON__Q9U6Y5	CON__Q9U6Y5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2933959960938	2	535.292422	1068.57029	1.2074	0.00064629	0.34547	0.00018493	1.5528	0.00083122	535.2926438100577	28.718	0.36291	28.718	28.628	28.991	0					14	7	3	0	0	0	0.65213	1	10578	10578		27.882	1.1893	1	120210		+	46786	674	31018	31142	47382	47382					0.03874886175003667
VPIPPVKGEE	10	Unmodified	_VPIPPVKGEE_					0	0	0		ENST00000539446.5_1_12:120648741-120648861:+|nuORF	ENST00000539446.5_1_12:120648741-120648861:+|nuORF	ENST00000539446.5_1_12:120648741-120648861:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.803955078125	2	532.802957	1063.59136	1.7166	0.00091463	-0.47777	-0.00025456	1.2389	0.00066007	532.8027149862264	40.082	0.29713	40.082	39.929	40.226	0					15	10	2	0	0	0	0.55603	1	15780	15780		39.253	4.1008	1	156320			46787	10524	31019	31143	47383	47383					0.0621089627454694
VPIPTVNQY	9	Unmodified	_VPIPTVNQY_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7821044921875	2	515.782025	1029.5495	1.5144	0.00078112	-0.24972	-0.0001288	1.2647	0.00065232	515.781569310714	42.028	0.48482	42.028	41.745	42.229	0					24	13	3	0	0	0	0.50858	1	16697	16697		31.53	1.0262	1	161980			46788	1293	31020	31144	47384	47384					0.035903405860153725
VPIRYYPFP	9	Unmodified	_VPIRYYPFP_					0	0	0			REV__ENST00000377113.5_1_10:21785785-21785953:-|nuORF	REV__ENST00000377113.5_1_10:21785785-21785953:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3160400390625	2	576.316035	1150.61752	0.035045	2.0197E-05	-0.60216	-0.00034703	-0.56711	-0.00032684	576.3159365550981	26.661	0.19857	26.661	26.574	26.773	0					15	7	3	0	0	0	0.39123	1	8405	8405		42.474	2.4163	1	176110	+		46789	18729	31021	31145	47385	47385					0.048232102366455365
VPITDQHIL	9	Unmodified	_VPITDQHIL_					0	0	0		ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant;ENSG00000163874|ENST00000373087|ZC3H12A	ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant	ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.2955932617188	2	518.295299	1034.57605	0.051737	2.6815E-05	0.54033	0.00028005	0.59206	0.00030686	518.295731909271	37.399	0.20898	37.399	37.316	37.525	0					12	6	2	0	0	0	0.28897	1	14162	14162		51.193	11.94	1	161490			46790	5616	31022	31146	47386	47386					0.060140294773418645
VPKGLVAV	8	Unmodified	_VPKGLVAV_					0	0	0		ENST00000604215.1_1_2:179441912-179442077:+|nuORF	ENST00000604215.1_1_2:179441912-179442077:+|nuORF	ENST00000604215.1_1_2:179441912-179442077:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.7613830566406	2	391.760364	781.506175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.37	1	25.37	24.87	25.87	0								0	0	0	1.7419	1	7627	7627		14.664	0	1				46791	11061	31023	31147	47387	47387					0.10668195599373576
VPKGNGTILK	10	Unmodified	_VPKGNGTILK_					0	0	0		nc|ENSG00000168743|Q6UXI9-2|NPNT;nc|ENSG00000168743|Q6UXI9-5|NPNT;NPNT|p.R542Gfs*10|1|0.43|ENSG00000168743|chr4:105968911-105968911|A/-|frameshift_variant;ENSG00000168743|ENST00000379987|NPNT;nc|ENSG00000168743|Q6UXI9-4|NPNT;nc|ENSG00000168743|Q6UXI9-6|NPNT;nc|ENSG00000168743|Q6UXI9-3|NPNT	nc|ENSG00000168743|Q6UXI9-2|NPNT	nc|ENSG00000168743|Q6UXI9-2|NPNT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.8190307617188	2	513.818941	1025.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.505	1	44.505	44.005	45.005	0								0	0	0	0.37602	1	17319	17319		37.812	8.662	1				46792	6115	31024	31148	47388	47388					0.11154308748336916
VPKILSGYL	9	Unmodified	_VPKILSGYL_					0	0	0		ENST00000372685.7_1_X:102509567-102510024:-|nuORF	ENST00000372685.7_1_X:102509567-102510024:-|nuORF	ENST00000372685.7_1_X:102509567-102510024:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	330.5377197265625	3	330.539182	988.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.657	1	16.657	16.157	17.157	0								0	0	0	0.3428	1	3833	3833		26.693	5.746	1				46793	8981	31025	31149	47389	47389					0.10096405488093296
VPKKIIDY	8	Unmodified	_VPKKIIDY_					0	0	0			REV__tr|U7T2K0|U7T2K0_FUSNULargeribosomalsubunitproteinuL23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplWPE=3SV=1	REV__tr|U7T2K0|U7T2K0_FUSNULargeribosomalsubunitproteinuL23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplWPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.29693603515625	2	488.29731	974.580068	-0.19803	-9.6698E-05	0.38031	0.0001857	0.18228	8.9005E-05	488.29740911281164	37.618	0.12487	37.618	37.568	37.693	0					11	6	2	0	0	0	0.74405	1	13454	13454		18.324	0	1	52675	+		46794	22105	31026	31150	47390	47390					0.09176118971049618
VPKNNGYTIE	10	Unmodified	_VPKNNGYTIE_					0	0	0			REV__ENSG00000100312|ENST00000216139|ACR	REV__ENSG00000100312|ENST00000216139|ACR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.7935791015625	2	567.793121	1133.57169	0.17968	0.00010202	0.59851	0.00033983	0.77819	0.00044185	567.7935234426792	36.683	0.19689	36.683	36.555	36.751	0					10	5	2	0	0	0	0.49411	1	13835	13835		45.972	0	1	197610	+		46795	13538	31027	31151	47391	47391					0.010245202637634065
VPLASRLLLC	10	Unmodified	_VPLASRLLLC_					0	0	0		ENST00000359867.7_2_22:38687065-38687464:-|nuORF	ENST00000359867.7_2_22:38687065-38687464:-|nuORF	ENST00000359867.7_2_22:38687065-38687464:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	362.2221374511719	3	362.223088	1083.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.998	1	49.998	49.498	50.498	0								0	0	0	0.4201	1	15603	15603		17.468	5.8321	1				46796	8854	31028	31152	47392	47392					0.1089582591037015
VPLKGIVSY	9	Unmodified	_VPLKGIVSY_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.2986145019531	2	488.29731	974.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.596	1	37.596	37.096	38.096	0								0	0	0	0.26578	1	12308	12308		42.396	23.036	1				46797	4225	31029	31153	47393	47393					0.0917611897103825
VPLKGIVSY	9	Unmodified	_VPLKGIVSY_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.29693603515625	2	488.29731	974.580068	0.75102	0.00036672	-1.2657	-0.00061804	-0.51469	-0.00025132	488.2967581918808	37.851	0.28939	37.851	37.767	38.056	0					21	12	3	0	0	0	0.14578	1	14369	14369		62.107	42.747	1	225630			46798	4225	31029	31153	47394	47394					0.0917611897103825
VPLKGIVSY	9	Unmodified	_VPLKGIVSY_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2973937988281	2	488.29731	974.580068	-1.2484	-0.00060959	0.92424	0.0004513	-0.32416	-0.00015828	488.29780246289357	37.611	0.13108	37.611	37.557	37.688	0					11	7	2	0	0	0	0.37744	1	12704	12704		52.937	25.054	1	47202			46799	4225	31029	31153	47395	47395					0.0917611897103825
VPLKGIVSY	9	Unmodified	_VPLKGIVSY_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.29705810546875	2	488.29731	974.580068	0.619	0.00030225	-1.1759	-0.00057417	-0.55687	-0.00027192	488.296680518663	37.815	0.29811	37.815	37.747	38.045	0					21	10	4	0	0	0	0.15558	1	14818	14818		60.118	35.916	1	345330			46800	4225	31029	31153	47396	47396					0.0917611897103825
VPLKGIVSY	9	Unmodified	_VPLKGIVSY_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2972106933594	2	488.29731	974.580068	0.79257	0.00038701	-0.6712	-0.00032774	0.12138	5.9268E-05	488.29692199107296	37.746	0.30208	37.746	37.642	37.944	0					17	6	4	0	0	0	0.032383	1	14773	14773		101.6	48.249	1	941320			46801	4225	31029	31153	47397	47397					0.0917611897103825
VPLMQLAQ	8	Unmodified	_VPLMQLAQ_					0	0	0			REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF	REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.2179260253906	2	450.254588	898.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.146	1	23.146	22.646	23.646	0								0	0	0	1.7419	1	7934	7934		33.516	1.5607	1		+		46802	19039	31030	31154	47398	47398					0.04131630513734308
VPLPAHLRY	9	Unmodified	_VPLPAHLRY_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B;nc|ENSG00000183307|Q9BXQ6-2|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.3145751953125	2	533.313826	1064.6131	-0.40576	-0.0002164	1.3481	0.00071896	0.94234	0.00050256	533.3145933615542	42.76	0.18122	42.76	42.699	42.88	0					16	11	2	0	0	0	0.33044	1	14063	14063		50.025	9.4519	1	79556			46803	6951	31031	31155	47399	47399					0.08337745813742004
VPLQRVDVM	9	Unmodified	_VPLQRVDVM_					0	0	0		nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF;STAB1|p.V800Cfs*113|1|0.34|ENSG00000010327|chr3:52509914-52509914|G/-|frameshift_variant;STAB1|p.P978Lfs*57|1|0.35|ENSG00000010327|chr3:52512385-52512385|C/-|frameshift_variant;STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant;STAB1|p.R1122Pfs*37|1|0.37|ENSG00000010327|chr3:52513891-52513892|-/C|frameshift_variant;STAB1|p.G1507Afs*84|1|0.26|ENSG00000010327|chr3:52517346-52517346|G/-|frameshift_variant;STAB1|p.E1712Rfs*8|1|0.12|ENSG00000010327|chr3:52519356-52519357|-/C|frameshift_variant;STAB1|p.F2001Lfs*111|1|0.35|ENSG00000010327|chr3:52521452-52521452|T/-|frameshift_variant;ENSG00000010327|ENST00000321725|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.798095703125	2	528.797152	1055.57975	0.72189	0.00038173	1.6368	0.00086553	2.3587	0.0012473	528.7979082923167	35.89	0.41603	35.89	35.784	36.2	0					11	8	2	0	0	0	0.21263	1	13956	13956		60.118	8.7828	1	342830			46804	1038	31032	31156	47400	47400					0.05418375979525081
VPLTGQLK	8	Unmodified	_VPLTGQLK_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	428.2682189941406	2	428.268553	854.522553	-0.23536	-0.0001008	0.023587	1.0102E-05	-0.21177	-9.0695E-05	428.26847733774184	24.419	0.30041	24.419	24.207	24.508	0					11	9	2	0	0	0	0.7126	1	7186	7186		31.955	1.6371	1	48925	+	+	46805	12603	31033	31157	47401	47401					0.0894727676546836
VPNFLESKR	9	Unmodified	_VPNFLESKR_					0	0	0			REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF	REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.306396484375	2	545.306198	1088.59784	-1.4968	-0.00081621	2.807	0.0015306	1.3102	0.00071444	545.3077650805036	29.088	0.25661	29.088	28.953	29.209	0					12	7	2	0	0	0	0.54267	1	9743	9743		27.882	1.1893	1	72054	+		46806	17755	31034	31158	47402	47402					0.057088342259021374
VPNKVIQCF	9	Carbamidomethyl (C)	_VPNKVIQC(Carbamidomethyl (C))F_	VPNKVIQC(1)F		VPNKVIQC(77)F		0	1	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.7977294921875	2	552.797152	1103.57975	1.3202	0.00072981	-0.99939	-0.00055246	0.32082	0.00017735	552.7964796946117	34.521	0.27169	34.521	34.435	34.706	0					25	11	3	0	0	0	0.11118	1	11276	11276		76.847	28.931	1	267180			46807	4438	31035	31159	47403	47403	185				0.0321037597952909
VPNKVIQCF	9	Carbamidomethyl (C)	_VPNKVIQC(Carbamidomethyl (C))F_	VPNKVIQC(1)F		VPNKVIQC(91)F		0	1	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.797119140625	2	552.797152	1103.57975	0.61965	0.00034254	-0.3673	-0.00020304	0.25236	0.0001395	552.7970710334116	34.794	0.39422	34.794	34.68	35.074	0					30	10	4	0	0	0	0.062676	1	12970	12970		90.777	8.5361	1	1663900			46808	4438	31035	31159	47404	47404	185				0.0321037597952909
VPNKVIQCF	9	Carbamidomethyl (C)	_VPNKVIQC(Carbamidomethyl (C))F_	VPNKVIQC(1)F		VPNKVIQC(110)F		0	1	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7974853515625	2	552.797152	1103.57975	0.21895	0.00012103	0.036281	2.0056E-05	0.25523	0.00014109	552.7971889601552	34.603	0.36021	34.603	34.473	34.833	0					38	16	4	0	0	0	0.030949	1	11660	11660		108.09	49.306	1	706250			46809	4438	31035	31159	47405	47405	185				0.0321037597952909
VPNKVIQCF	9	Carbamidomethyl (C)	_VPNKVIQC(Carbamidomethyl (C))F_	VPNKVIQC(1)F		VPNKVIQC(71)F		0	1	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.7982177734375	2	552.797152	1103.57975	1.1437	0.00063225	0.074276	4.1059E-05	1.218	0.00067331	552.7971773419541	34.534	0.20621	34.534	34.49	34.696	0					9	5	2	0	0	0	0.13519	1	12240	12240		71.296	12.514	1	133170			46810	4438	31035	31159	47406	47406	185				0.0321037597952909
VPNKVIQCF	9	Carbamidomethyl (C)	_VPNKVIQC(Carbamidomethyl (C))F_	VPNKVIQC(1)F		VPNKVIQC(130)F		0	1	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7974243164062	2	552.797152	1103.57975	1.8187	0.0010054	-1.0911	-0.00060314	0.72759	0.00040221	552.7963944908904	34.726	0.4113	34.726	34.62	35.032	0					20	8	3	0	0	0	0.013383	1	13347	13347		133.81	69.605	1	1833400			46811	4438	31035	31159	47407	47407	185				0.0321037597952909
VPNKVIQCF	9	Unmodified	_VPNKVIQCF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2883911132812	2	524.28642	1046.55829	0.55468	0.00029081	0.77532	0.00040649	1.33	0.0006973	524.2869439113309	38.71	0.20067	38.71	38.64	38.841	0					19	11	2	0	0	0	0.21263	1	13042	13042		53.351	9.7254	1	100070			46812	4438	31035	31160	47408	47408					0.03686990950814106
VPNKVIQCF	9	Unmodified	_VPNKVIQCF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7888793945312	2	524.28642	1046.55829	1.1394	0.00059736	1.0137	0.00053144	2.153	0.0011288	524.7885379249747	38.704	0.22326	38.704	38.582	38.806	0					16	11	2	0	0	0	0.21263	1	13831	13831		53.351	10.955	1	66894			46813	4438	31035	31160	47409	47409					0.03686990950814106
VPNKVIQCF	9	Unmodified	_VPNKVIQCF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.287353515625	2	524.28642	1046.55829	-1.267	-0.00066429	3.0288	0.001588	1.7618	0.00092367	524.2881902225844	38.717	0.1601	38.717	38.617	38.777	0					14	8	2	0	0	0	0.36892	1	13821	13821		45.952	11.779	1	47829			46814	4438	31035	31160	47410	47410					0.03686990950814106
VPNKVIQCF	9	Unmodified	_VPNKVIQCF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.2879028320312	2	524.28642	1046.55829	1.6259	0.00085246	-0.66074	-0.00034642	0.96519	0.00050604	524.2859706088841	38.878	0.62322	38.878	38.678	39.301	0					22	13	2	0	0	0	0.0049871	1	15308	15308		143.11	74.32	1	851590			46815	4438	31035	31160	47411	47411					0.03686990950814106
VPPARKSSEE	10	Unmodified	_VPPARKSSEE_					0	0	0		ZNF704|p.L253Pfs*36|1|0.05|ENSG00000164684|chr8:80664984-80664985|-/AAACCAG|frameshift_variant;ENSG00000164684|ENST00000327835|ZNF704	ZNF704|p.L253Pfs*36|1|0.05|ENSG00000164684|chr8:80664984-80664985|-/AAACCAG|frameshift_variant	ZNF704|p.L253Pfs*36|1|0.05|ENSG00000164684|chr8:80664984-80664985|-/AAACCAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.29296875	2	550.290745	1098.56694	3.7458	0.0020613	0.59345	0.00032657	4.3392	0.0023878	550.2910634438093	27.484	0.27158	27.484	27.373	27.645	0					15	5	3	0	0	0	0.16018	1	9851	9851		84.916	9.8722	1	4538300			46816	5717	31036	31161	47412	47412					0.02159636120995856
VPPELSAVAPG	11	Unmodified	_VPPELSAVAPG_					0	0	0			REV__ENSG00000139289|ENST00000266671|PHLDA1	REV__ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	518.7872314453125	2	518.787307	1035.56006	1.357	0.000704	-0.19182	-9.9515E-05	1.1652	0.00060449	518.7873651981915	39.711	0.1464	39.711	39.633	39.78	0					11	6	2	0	0	0	0.5473	1	15121	15121		40.778	1.5253	1	86766	+		46817	15020	31037	31162	47413	47413					0.04370323240414109
VPPHGGGAL	9	Unmodified	_VPPHGGGAL_					0	0	0		ENST00000491215.1_1_6:32163216-32164008:-|nuORF;nc|ENSG00000204301|Q99466-2|NOTCH4;ENSG00000204301|ENST00000375023|NOTCH4	ENST00000491215.1_1_6:32163216-32164008:-|nuORF	ENST00000491215.1_1_6:32163216-32164008:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.721435546875	2	402.72177	803.428987	0.048118	1.9378E-05	0.16641	6.7018E-05	0.21453	8.6396E-05	402.7216625562521	28.838	0.3084	28.838	28.728	29.037	0					10	6	2	0	0	0	0.43174	1	10625	10625		39.021	0	1	79767			46818	7691	31038	31163	47414	47414					0.019409773830375343
VPPHGGGAL	9	Unmodified	_VPPHGGGAL_					0	0	0		ENST00000491215.1_1_6:32163216-32164008:-|nuORF;nc|ENSG00000204301|Q99466-2|NOTCH4;ENSG00000204301|ENST00000375023|NOTCH4	ENST00000491215.1_1_6:32163216-32164008:-|nuORF	ENST00000491215.1_1_6:32163216-32164008:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.7218017578125	2	402.72177	803.428987	-0.59346	-0.000239	0.51731	0.00020833	-0.07615	-3.0667E-05	402.7219422287694	28.798	0.31733	28.798	28.658	28.975	0					9	6	2	0	0	0	0.43174	1	10476	10476		39.021	9.18	1	173800			46819	7691	31038	31163	47415	47415					0.019409773830375343
VPPKLWMCL	9	Unmodified	_VPPKLWMCL_					0	0	0			REV__ENST00000591629.1_1_18:37115535-37380052:-|nuORF	REV__ENST00000591629.1_1_18:37115535-37380052:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8659362792969	3	362.866136	1085.57658	0.73594	0.00026705	-1.5667	-0.0005685	-0.83074	-0.00030145	362.8655738765005	35.032	0.2487	35.032	34.954	35.203	0					15	6	4	0	0	0	0.55282	1	13096	13096		19.997	0	1	475890	+		46820	20532	31039	31164	47416	47416					0.0372140960116667
VPPPSRSR	8	Unmodified	_VPPPSRSR_					0	0	0			REV__nc|ENSG00000161547|Q01130-2|SRSF2	REV__nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	448.25848388671875	2	448.259051	894.503549	-0.46475	-0.00020833	-0.0076063	-3.4096E-06	-0.47235	-0.00021174	448.25887693881356	51.737	0.31309	51.737	51.624	51.937	0					40	18	3	0	0	0	0.72381	1	18422	18422		30.504	6.3009	1	389040	+		46821	15781	31040	31165	47417	47417					0.05207740194430244
VPPVAPNTQLF	11	Unmodified	_VPPVAPNTQLF_					0	0	0		ENST00000485361.1_1_3:48668404-48668690:-|nuORF;ENST00000496469.1_1_3:48667303-48668690:-|nuORF;ENST00000489483.5_1_3:48665668-48668656:-|nuORF;SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	ENST00000485361.1_1_3:48668404-48668690:-|nuORF	ENST00000485361.1_1_3:48668404-48668690:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.8298950195312	2	591.829506	1181.64446	-0.060714	-3.5932E-05	0.62378	0.00036917	0.56307	0.00033324	591.829750373557	43.647	0.2906	43.647	43.525	43.815	0					37	15	3	0	0	0	0.38061	1	17034	17034		44.377	10.205	1	381100			46822	7871	31041	31166	47418	47418					0.06090274057191891
VPQRRSEN	8	Unmodified	_VPQRRSEN_					0	0	0		ENST00000428457.1_1_7:47317609-47317696:-|nuORF	ENST00000428457.1_1_7:47317609-47317696:-|nuORF	ENST00000428457.1_1_7:47317609-47317696:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2640075683594	2	493.262322	984.510091	3.4495	0.0017015	0.17098	8.434E-05	3.6205	0.0017858	493.2622664899861	26.388	0.21237	26.388	26.323	26.536	0					12	7	2	0	0	0	0.66372	1	8302	8302		38.806	1.7777	1	90589			46823	9466	31042	31167	47419	47419					0.017216333551459684
VPQRSQKA	8	Unmodified	_VPQRSQKA_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2645568847656	2	457.264333	912.514114	-0.12777	-5.8426E-05	0.4205	0.00019228	0.29272	0.00013385	457.26443516044014	47.104	0.39969	47.104	46.893	47.293	0					37	25	2	0	0	0	0.8006	1	14968	14968		20.482	0	1	79349			46824	4801	31043	31168	47420	47420					0.05435722848858404
VPQSKSVP	8	Unmodified	_VPQSKSVP_					0	0	0			REV__ENST00000518961.1_1_8:73944214-73958369:+|nuORF	REV__ENST00000518961.1_1_8:73944214-73958369:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	421.24273681640625	2	421.242535	840.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.415	1	20.415	19.915	20.915	0								0	0	0	1.7419	1	5460	5460		40.573	5.3719	1		+		46825	15356	31044	31169	47421	47421					0.04390113351723812
VPQSPYHAM	9	Unmodified	_VPQSPYHAM_					0	0	0			REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2435302734375	2	515.244752	1028.47495	0.77438	0.000399	-3.5035	-0.0018051	-2.7291	-0.0014061	515.2432433932065	25.661	0.39506	25.661	25.506	25.901	0					10	6	3	0	0	0	0.22377	1	9146	9146		58.782	4.0056	1	208630	+		46826	12261	31045	31170	47422	47422					-0.0381474549703853
VPRGVQFL	8	Unmodified	_VPRGVQFL_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.2742614746094	2	458.27417	914.533787	0.058451	2.6786E-05	0.52399	0.00024013	0.58244	0.00026692	458.2744068257413	37.859	0.16567	37.859	37.788	37.954	0					14	9	2	0	0	0	0.75243	1	12366	12366		26.796	0	1	56440			46827	2703	31046	31171	47423	47423					0.07310098859602476
VPRHRRRSAS	10	Unmodified	_VPRHRRRSAS_					0	0	0			REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	611.3563232421875	2	611.355411	1220.69627	0.92481	0.00056539	0.67594	0.00041324	1.6007	0.00097863	611.3556129587457	53.575	0.94929	53.575	53.211	54.16	0					125	59	3	0	0	0	0.71484	1	17210	17210		19.997	19.997	1	222030	+		46828	17932	31047	31172	47424	47424					0.09474875314322162
VPRVTLGT	8	Unmodified	_VPRVTLGT_					0	0	0		nc|ENSG00000175164|P16442|ABO;ENSG00000175164|ENST00000538324|ABO	nc|ENSG00000175164|P16442|ABO	nc|ENSG00000175164|P16442|ABO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.7582092285156	2	421.758352	841.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.097	1	28.097	27.597	28.597	0								0	0	0	1.7419	1	10255	10255		31.955	5.1588	1				46829	6535	31048	31173	47425	47425					0.0750610610567719
VPSHPKGR	8	Unmodified	_VPSHPKGR_					0	0	0			REV__ENST00000370828.3_1_X:132445305-132458320:-|nuORF	REV__ENST00000370828.3_1_X:132445305-132458320:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.2528991699219	2	439.253769	876.492984	0.26972	0.00011847	-1.067	-0.0004687	-0.79732	-0.00035023	439.2530017357411	23.774	0.14352	23.774	23.691	23.834	0					7	5	2	0	0	0	0.7126	1	6938	6938		31.955	2.1133	1	39082	+		46830	18641	31049	31174	47426	47426					0.04979757540002083
VPSKDPSEPL	10	Unmodified	_VPSKDPSEPL_					0	0	0			REV__CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	REV__CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.7830200195312	2	534.782222	1067.54989	-0.58678	-0.0003138	1.3338	0.00071328	0.747	0.00039948	534.7831388916198	30.018	0.21926	30.018	29.927	30.146	0					21	8	4	0	0	0	0.49411	1	9829	9829		45.972	1.4412	1	298070	+		46831	12526	31050	31175	47427	47427					0.01881715515196447
VPSKIQLIA	9	Unmodified	_VPSKIQLIA_					0	0	0		nc|ENSG00000122778|Q9HCM3-3|KIAA1549;nc|ENSG00000122778|Q9HCM3-4|KIAA1549;KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	nc|ENSG00000122778|Q9HCM3-3|KIAA1549	nc|ENSG00000122778|Q9HCM3-3|KIAA1549	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.81024169921875	2	484.810585	967.606617	-0.00015039	-7.291E-08	-0.13048	-6.326E-05	-0.13063	-6.3333E-05	484.8106154258732	24.62	0.15641	24.62	24.508	24.664	0					5	4	2	0	0	0	0.48389	1	7307	7307		34.173	2.2177	1	39737			46832	3288	31051	31176	47428	47428					0.12151807862380792
VPSKKPSSNF	10	Unmodified	_VPSKKPSSNF_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-2|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-2|CCDC158	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.7999267578125	2	545.798206	1089.58186	0.50588	0.00027611	0.61417	0.00033521	1.12	0.00061132	545.7988552090578	34.061	0.11297	34.061	33.985	34.098	0					6	4	2	0	0	0	0.49411	1	11464	11464		45.972	10.354	1	82181	+		46833	15915	31052	31177	47429	47429					0.04065127988997119
VPSLCALKELV	11	Unmodified	_VPSLCALKELV_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-2|KIF27	REV__nc|ENSG00000165115|Q86VH2-2|KIF27	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.2312927246094	3	391.23002	1170.66823	3.1913	0.0012485	-0.015635	-6.1168E-06	3.1757	0.0012424	391.23000288208857	22.564	0.467	22.564	22.455	22.922	0					26	9	4	0	0	0	0.65797	1	7514	7514		31.634	2.4642	1	2198700	+		46834	16022	31053	31178	47430	47430					0.08972371499339715
VPSPAQIMY	9	Unmodified	_VPSPAQIMY_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.25701904296875	2	503.257328	1004.5001	1.1727	0.00059017	-1.3139	-0.00066123	-0.14119	-7.1056E-05	503.2566003117796	45.568	0.56131	45.568	45.196	45.757	0					33	22	2	0	0	0	0.2873	1	18248	18248		51.335	4.569	1	159310			46835	6751	31054	31179	47431	47431					-0.001966906944630864
VPSRVLLGR	9	Unmodified	_VPSRVLLGR_					0	0	0			REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.8818664550781	3	332.881943	995.623999	0.52157	0.00017362	-0.6668	-0.00022197	-0.14523	-4.8344E-05	332.8816690155172	27.205	0.34414	27.205	27.075	27.419	0					17	8	3	0	0	0	0.48389	1	9465	9465		41.427	0	1	1100100	+		46836	12710	31055	31180	47432	47432					0.12601148188059597
VPSTANQLS	9	Unmodified	_VPSTANQLS_					0	0	0			REV__nc|ENSG00000132164|P48066-2|SLC6A11	REV__nc|ENSG00000132164|P48066-2|SLC6A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.74041748046875	2	458.740357	915.46616	-0.65809	-0.00030189	-1.4131	-0.00064824	-2.0712	-0.00095013	458.740445950664	34.784	0.51212	34.784	34.521	35.033	0					31	13	4	0	0	0	0.17854	1	12953	12953		64.207	2.0999	1	274060	+		46837	14645	31056	31181	47433	47433					0.005046041381433497
VPSVRSDQRQ	10	Unmodified	_VPSVRSDQRQ_					0	0	0			REV__nc|ENSG00000196923|Q9NR12-4|PDLIM7	REV__nc|ENSG00000196923|Q9NR12-4|PDLIM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	586.3131103515625	2	586.312543	1170.61053	0.041402	2.4274E-05	0.19739	0.00011573	0.23879	0.00014001	586.3127594707403	12.778	0.33381	12.778	12.705	13.039	0					40	17	5	0	0	0	0.26198	1	2545	2545		71.877	3.0919	1	2888800	+		46838	21175	31057	31182	47434	47434					0.032052456181418165
VPSWGGTMP	9	Unmodified	_VPSWGGTMP_					0	0	0			REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.22216796875	2	466.220746	930.426938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.217	1	40.217	39.717	40.717	0								0	0	0	0.35507	1	13475	13475		24.203	2.2429	1		+		46839	20409	31058	31183	47435	47435					-0.04105819417065959
VPTDEARAF	9	Unmodified	_VPTDEARAF_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2530517578125	2	503.253631	1004.49271	1.6742	0.00084253	-1.865	-0.00093855	-0.1908	-9.6022E-05	503.25266320783265	29.386	0.16356	29.386	29.323	29.486	0					9	5	2	0	0	0	0.028876	1	9268	9268		110.12	60.678	1	34293			46840	2260	31059	31184	47436	47436					-0.009357069705288268
VPTDEARAF	9	Unmodified	_VPTDEARAF_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.25341796875	2	503.253631	1004.49271	0.62326	0.00031366	-0.56706	-0.00028538	0.056191	2.8278E-05	503.25333909002836	29.635	0.29843	29.635	29.541	29.839	0					17	7	3	0	0	0	0.18416	1	10596	10596		63.534	22.756	1	419370			46841	2260	31059	31184	47437	47437					-0.009357069705288268
VPTDEARAF	9	Unmodified	_VPTDEARAF_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2537841796875	2	503.253631	1004.49271	0.74034	0.00037258	-0.42516	-0.00021397	0.31518	0.00015861	503.25308052060194	29.645	0.25231	29.645	29.57	29.823	0					12	6	3	0	0	0	0.38666	1	10610	10610		42.864	14.982	1	186660			46842	2260	31059	31184	47438	47438					-0.009357069705288268
VPTDEARAF	9	Unmodified	_VPTDEARAF_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2535400390625	2	503.253631	1004.49271	0.07452	3.7503E-05	0.017853	8.9845E-06	0.092373	4.6487E-05	503.2536141574309	29.68	0.36164	29.68	29.522	29.884	0					18	7	3	0	0	0	0.012231	1	11000	11000		136.27	72.061	1	487300			46843	2260	31059	31184	47439	47439					-0.009357069705288268
VPTDEARAF	9	Unmodified	_VPTDEARAF_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2539367675781	2	503.253631	1004.49271	-0.15233	-7.6659E-05	0.81182	0.00040855	0.65949	0.00033189	503.2540082313187	29.452	0.17841	29.452	29.351	29.529	0					6	4	2	0	0	0	0.19605	1	9912	9912		62.107	21.329	1	73474			46844	2260	31059	31184	47440	47440					-0.009357069705288268
VPTDEARAF	9	Unmodified	_VPTDEARAF_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.25347900390625	2	503.253631	1004.49271	-0.4561	-0.00022953	1.0343	0.00052051	0.5782	0.00029098	503.25415117070577	29.608	0.40596	29.608	29.456	29.862	0					18	8	3	0	0	0	0.070005	1	10851	10851		88.177	34.825	1	891690			46845	2260	31059	31184	47441	47441					-0.009357069705288268
VPTRLEGWF	9	Unmodified	_VPTRLEGWF_					0	0	0		ENSG00000168350|ENST00000305631|DEGS2	ENSG00000168350|ENST00000305631|DEGS2	ENSG00000168350|ENST00000305631|DEGS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7977294921875	2	552.795466	1103.57638	3.6549	0.0020204	-0.39752	-0.00021975	3.2574	0.0018007	552.7952782921376	34.759	0.70729	34.759	34.606	35.313	0					40	14	4	0	0	0	0.14578	1	13339	13339		62.107	5.3864	1	8509400			46846	6082	31060	31185	47442	47442					0.028734491971590614
VPTTGIIEY	9	Unmodified	_VPTTGIIEY_					0	0	0		ENSG00000156052|ENST00000286548|GNAQ;ENSG00000088256|ENST00000078429|GNA11;ENSG00000156049|ENST00000341700|GNA14;GNAQ|p.R183Q|1|0.28|ENSG00000156052|chr9:77797577-77797577|C/T|missense_variant;GNA11|p.G208Afs*16|1|0.38|ENSG00000088256|chr19:3118936-3118936|G/-|frameshift_variant	ENSG00000156052|ENST00000286548|GNAQ	ENSG00000156052|ENST00000286548|GNAQ	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7691345214844	2	496.768583	991.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.141	1	44.141	43.641	44.641	0								0	0	0	0.24724	1	17687	17687		44.117	9.9443	1				46847	1775	31061	31186	47443	47443					0.02651231974800794
VPTVSRPY	8	Unmodified	_VPTVSRPY_					0	0	0		ENSG00000265808|ENST00000578049|SEC22B	ENSG00000265808|ENST00000578049|SEC22B	ENSG00000265808|ENST00000578049|SEC22B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7561340332031	2	459.75581	917.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.209	1	28.209	27.709	28.709	0								0	0	0	1.7419	1	9943	9943		42.396	5.3677	1				46848	8069	31062	31187	47444	47444					0.035018022430335805
VPVAKTAEL	9	Unmodified	_VPVAKTAEL_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2791748046875	2	464.279118	926.543683	0.10359	4.8094E-05	-0.36053	-0.00016739	-0.25694	-0.00011929	464.2789512178802	27.48	0.18179	27.48	27.39	27.572	0					11	4	3	0	0	0	0.1424	1	9594	9594		69.628	20.186	1	271350			46849	11866	31063	31188	47445	47445					0.07747242074333371
VPVAKTAEL	9	Unmodified	_VPVAKTAEL_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.278564453125	2	464.279118	926.543683	-0.48225	-0.0002239	-0.65228	-0.00030284	-1.1345	-0.00052674	464.27873263796477	27.416	0.16935	27.416	27.306	27.476	0					6	3	2	0	0	0	0.46194	1	9823	9823		36.447	0.82846	1	191350			46850	11866	31063	31188	47446	47446					0.07747242074333371
VPVALADPH	9	Unmodified	_VPVALADPH_					0	0	0		FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant;ENSG00000102302|ENST00000375135|FGD1	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.7557373046875	2	459.75581	917.497067	-0.0027093	-1.2456E-06	-0.23584	-0.00010843	-0.23854	-0.00010967	459.7555912380926	32.801	0.39499	32.801	32.579	32.974	0					15	11	2	0	0	0	0.30268	1	11440	11440		50.025	5.4935	1	63744			46851	2163	31064	31189	47447	47447					0.035018022430335805
VPVDLQHQF	9	Unmodified	_VPVDLQHQF_					0	0	0		PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant;ENSG00000132326|ENST00000254657|PER2	PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7854614257812	2	541.785099	1081.55564	2.0292	0.0010994	-1.4393	-0.00077978	0.58996	0.00031963	541.7842755756749	37.252	0.4776	37.252	37.12	37.598	0					34	14	3	0	0	0	0.035062	1	14546	14546		104.06	61.661	1	361690			46852	3775	31065	31190	47448	47448					0.018128588175159166
VPVDLQHQF	9	Unmodified	_VPVDLQHQF_					0	0	0		PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant;ENSG00000132326|ENST00000254657|PER2	PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7855834960938	2	541.785099	1081.55564	2.0515	0.0011115	-0.73754	-0.00039959	1.314	0.00071191	541.7850202559389	37.252	0.74515	37.252	37.008	37.754	0					30	15	3	0	0	0	0.04067	1	14517	14517		98.582	34.375	1	746840			46853	3775	31065	31190	47449	47449					0.018128588175159166
VPVFVHEQQ	9	Unmodified	_VPVFVHEQQ_					0	0	0		sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1;sp|P16726|CVC2_HCMVACapsidvertexcomponent2OS=Humancytomegalovirus(strainAD169)OX=10360GN=CVC2PE=1SV=1	sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1	sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7854614257812	2	541.785099	1081.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.041	1	37.041	36.541	37.541	0								0	0	0	0.32356	1	13266	13266		30.504	0	1				46854	22466	31066	31191	47450	47450					0.01812858817538654
VPVGEKTTY	9	Unmodified	_VPVGEKTTY_					0	0	0		ENSG00000163975|ENST00000296350|MELTF;ENST00000469783.1_1_3:196715998-196731024:-|nuORF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2662048339844	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.398	1	23.398	22.898	23.898	0								0	0	0	0.3119	1	6768	6768		32.812	2.3088	1				46855	5635	31067	31192	47451	47451					0.021303478320419345
VPVGEKTTY	9	Unmodified	_VPVGEKTTY_					0	0	0		ENSG00000163975|ENST00000296350|MELTF;ENST00000469783.1_1_3:196715998-196731024:-|nuORF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2664794921875	2	497.266207	992.517862	0.70739	0.00035176	-0.95805	-0.00047641	-0.25067	-0.00012465	497.26613589733324	23.705	0.28108	23.705	23.565	23.846	0					14	6	3	0	0	0	0.18416	1	7896	7896		63.534	14.092	1	518140			46856	5635	31067	31192	47452	47452					0.021303478320419345
VPVLATIGSA	10	Unmodified	_VPVLATIGSA_					0	0	0			REV__ENSG00000185758|ENST00000541814|CLDN24	REV__ENSG00000185758|ENST00000541814|CLDN24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.27886962890625	2	464.279118	926.543683	-0.141	-6.5465E-05	-0.88694	-0.00041179	-1.0279	-0.00047725	464.2788585151472	27.481	0.26436	27.481	27.321	27.586	0					10	5	3	0	0	0	0.4943	1	9947	9947		45.952	10.334	1	488260	+		46857	17045	31068	31193	47453	47453					0.07747242074333371
VPVLEPQLPG	10	Unmodified	_VPVLEPQLPG_					0	0	0		ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.2066955566406	3	350.206092	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.272	1	44.272	43.772	44.772	0								0	0	0	0.4201	1	17739	17739		16.717	3.9057	1				46858	4473	31069	31194	47454	47454					0.07455200137133033
VPVLIPCH	8	Unmodified	_VPVLIPCH_					0	0	0		FAM24B|p.N43Ifs*48|1|0.19|ENSG00000213185|chr10:122849404-122849404|T/-|frameshift_variant	FAM24B|p.N43Ifs*48|1|0.19|ENSG00000213185|chr10:122849404-122849404|T/-|frameshift_variant	FAM24B|p.N43Ifs*48|1|0.19|ENSG00000213185|chr10:122849404-122849404|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.2532653808594	2	439.251849	876.489145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.895	1	24.895	24.395	25.395	0								0	0	0	1.7419	1	8769	8769		33.493	10.45	1				46859	11129	31070	31195	47455	47455					0.04595951721910296
VPVSAEPPK	9	Unmodified	_VPVSAEPPK_					0	0	0			REV__SNAP91|p.T503A|1|0.33|ENSG00000065609|chr6:83593667-83593667|T/C|missense_variant	REV__SNAP91|p.T503A|1|0.33|ENSG00000065609|chr6:83593667-83593667|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.2627258300781	2	462.263468	922.512382	0.71221	0.00032923	-3.2801	-0.0015163	-2.5679	-0.001187	462.2626552712444	35.459	0.41668	35.459	35.305	35.722	0					13	11	2	0	0	0	0.41113	1	13313	13313		40.778	5.1599	1	77563	+		46860	21549	31071	31196	47456	47456					0.04802669040236651
VPVSTINHAF	10	Unmodified	_VPVSTINHAF_					0	0	0		nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF	nc|ENSG00000147526|O75410-5|TACC1	nc|ENSG00000147526|O75410-5|TACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7935791015625	2	542.792924	1083.57129	1.8842	0.0010227	-0.78782	-0.00042762	1.0964	0.00059512	542.79256456668	34.539	0.24807	34.539	34.454	34.702	0					13	6	3	0	0	0	0.19797	1	12886	12886		79.713	38.934	1	246170			46861	4787	31072	31197	47457	47457					0.032851453345756454
VPVSTINHAF	10	Unmodified	_VPVSTINHAF_					0	0	0		nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF	nc|ENSG00000147526|O75410-5|TACC1	nc|ENSG00000147526|O75410-5|TACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.793212890625	2	542.792924	1083.57129	2.0246	0.0010989	-0.94689	-0.00051397	1.0777	0.00058496	542.7924794594227	34.53	0.30795	34.53	34.376	34.684	0					12	6	2	0	0	0	0.41384	1	13256	13256		54.722	10.345	1	586830			46862	4787	31072	31197	47458	47458					0.032851453345756454
VPVSVVSDSY	10	Unmodified	_VPVSVVSDSY_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2689819335938	2	526.268947	1050.52334	1.9871	0.0010457	-1.2024	-0.00063276	0.7847	0.00041296	526.2683239752654	39.531	0.27308	39.531	39.371	39.644	0					17	10	2	0	0	0	0.22198	1	15033	15033		76.774	7.9873	1	121470			46863	2401	31073	31198	47459	47459					0.00010026623863268469
VPVSVVSDSY	10	Unmodified	_VPVSVVSDSY_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2693481445312	2	526.268947	1050.52334	0.96696	0.00050888	0.36863	0.000194	1.3356	0.00070288	526.2688481513327	39.51	0.30485	39.51	39.311	39.616	0					15	10	2	0	0	0	0.12896	1	15509	15509		90.37	44.398	1	75694			46864	2401	31073	31198	47460	47460					0.00010026623863268469
VPVSVVSDSY	10	Unmodified	_VPVSVVSDSY_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2696533203125	2	526.268947	1050.52334	0.60957	0.0003208	1.1627	0.00061187	1.7722	0.00093267	526.26990133845	39.41	0.24261	39.41	39.301	39.543	0					14	5	3	0	0	0	0.031703	1	15576	15576		116.9	42.649	1	173830			46865	2401	31073	31198	47461	47461					0.00010026623863268469
VPVSVVSDSY	10	Unmodified	_VPVSVVSDSY_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2693481445312	2	526.268947	1050.52334	1.6274	0.00085647	-1.4729	-0.00077515	0.1545	8.131E-05	526.268254831718	39.43	0.28313	39.43	39.243	39.526	0					9	6	2	0	0	0	0.16018	1	15598	15598		84.916	10.66	1	204430			46866	2401	31073	31198	47462	47462					0.00010026623863268469
VPVTTEVSY	9	Unmodified	_VPVTTEVSY_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7579650878906	2	497.758215	993.501877	0.56104	0.00027926	-0.28293	-0.00014083	0.27811	0.00013843	497.75785379586705	36.838	0.30194	36.838	36.724	37.026	0					18	8	3	0	0	0	0.25109	1	13918	13918		55.504	14.932	1	79953			46867	11716	31074	31199	47463	47463					0.00486641595148285
VPVYPPHSEN	10	Unmodified	_VPVYPPHSEN_					0	0	0		nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;RC3H2|p.T1132Qfs*5|1|0.29|ENSG00000056586|chr9:122849809-122849809|T/-|frameshift_variant;ENSG00000056586|ENST00000357244|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	570.2833251953125	2	569.780013	1137.54547	0.13342	7.6022E-05	3.1327	0.0017849	3.2661	0.001861	570.2829234506456	29.602	0.16006	29.602	29.49	29.65	0					5	3	2	0	0	0	0.65213	1	10986	10986		27.882	4.3595	1	63148			46868	1290	31075	31200	47464	47464					-0.017797489077111095
VPWEVGLANG	10	Unmodified	_VPWEVGLANG_					0	0	0		ENST00000355947.6_1_7:99489545-99489743:-|nuORF	ENST00000355947.6_1_7:99489545-99489743:-|nuORF	ENST00000355947.6_1_7:99489545-99489743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.2720947265625	2	521.271824	1040.5291	1.5216	0.00079316	-0.63505	-0.00033103	0.88653	0.00046212	521.2712967945579	38.598	0.80553	38.598	38.072	38.878	0					68	31	3	0	0	0	0.65213	1	14494	14494		27.882	0	1	218630			46869	8805	31076	31201	47465	47465					0.010451699261693648
VQAEVVSR	8	Unmodified	_VQAEVVSR_					0	0	0			REV__nc|ENSG00000086619|Q86YB8-2|ERO1B	REV__nc|ENSG00000086619|Q86YB8-2|ERO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	444.2510070800781	2	444.250892	886.48723	-2.8212	-0.0012533	2.972	0.0013203	0.15075	6.6973E-05	444.25213212143495	21.711	0.13818	21.711	21.623	21.761	0					5	3	2	0	0	0	0.48092	1	6352	6352		62.107	5.3864	1	275290	+		46870	13368	31077	31202	47466	47466					0.039446142376732496
VQAFFDLI	8	Unmodified	_VQAFFDLI_					0	0	0		PGAP1|p.R297Q|1|0.31|ENSG00000197121|chr2:196897168-196897168|C/T|missense_variant	PGAP1|p.R297Q|1|0.31|ENSG00000197121|chr2:196897168-196897168|C/T|missense_variant	PGAP1|p.R297Q|1|0.31|ENSG00000197121|chr2:196897168-196897168|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7616271972656	2	476.760561	951.506569	0.7976	0.00038026	1.2715	0.00060619	2.0691	0.00098645	476.7611825458627	43.595	0.19273	43.595	43.443	43.636	0					8	6	2	0	0	0	0.66372	1	17442	17442		38.806	1.647	1	58065			46871	11925	31078	31203	47467	47467					0.028875705285713593
VQAFVIAQQ	9	Unmodified	_VQAFVIAQQ_					0	0	0			REV__nc|ENSG00000184831|Q9BUR5-2|APOO	REV__nc|ENSG00000184831|Q9BUR5-2|APOO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2834777832031	2	502.282192	1002.54983	3.5455	0.0017808	-0.35608	-0.00017885	3.1894	0.001602	502.2818783879177	32.834	0.22852	32.834	32.745	32.973	0					15	8	3	0	0	0	0.1236	1	10978	10978		73.975	7.5455	1	201640	+		46872	16995	31079	31204	47468	47468					0.04865760305847289
VQAGTLTLK	9	Unmodified	_VQAGTLTLK_					0	0	0			REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant;REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	REV__SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.78399658203125	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.577	1	13.577	13.077	14.077	0								0	0	0	0.24544	1	2751	2751		44.377	3.599	1		+		46873	13295;21602	31080	31205	47469	47469					0.08698644448611503
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.2935791015625	2	556.292756	1110.57096	1.8096	0.0010067	-0.22376	-0.00012447	1.5858	0.00088219	556.2926763892929	36.943	0.2201	36.943	36.824	37.044	0					12	6	3	0	0	0	0.048471	1	13967	13967		95.815	41.039	1	175510			46874	1597	31081	31206	47470	47470					0.020097256146982545
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	556.2922973632812	2	556.292756	1110.57096	1.6908	0.00094061	-1.8699	-0.0010402	-0.17902	-9.9589E-05	556.2922015377038	36.936	0.29377	36.936	36.801	37.095	0					21	9	3	0	0	0	0.01873	1	14394	14394		124.08	47.306	1	428980			46875	1597	31081	31206	47471	47471					0.020097256146982545
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.29248046875	2	556.292756	1110.57096	1.1295	0.00062833	-0.76994	-0.00042831	0.35957	0.00020002	556.2925255255557	36.704	0.11866	36.704	36.659	36.777	0					7	5	2	0	0	0	0.21263	1	13157	13157		60.118	19.546	1	33471			46876	1597	31081	31206	47472	47472					0.020097256146982545
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.293212890625	2	556.292756	1110.57096	1.8229	0.001014	-1.066	-0.00059301	0.75687	0.00042104	556.292164541815	36.872	0.35875	36.872	36.761	37.12	0					18	7	4	0	0	0	0.011389	1	14355	14355		138.06	66.185	1	770460			46877	1597	31081	31206	47473	47473					0.020097256146982545
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.29296875	2	556.292756	1110.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.881	1	36.881	36.381	37.381	0								0	0	0	0.018912	1	14371	14371		101.25	40.281	1				46878	1597	31081	31206	47474	47474					0.020097256146982545
VQASTYVQRA	10	Unmodified	_VQASTYVQRA_					0	0	0		ENSG00000129038|ENST00000261921|LOXL1;ENST00000566011.5_1_15:74234368-74244175:+|nuORF	ENSG00000129038|ENST00000261921|LOXL1	ENSG00000129038|ENST00000261921|LOXL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.7985229492188	2	561.798737	1121.58292	0.017313	9.7261E-06	0.2794	0.00015696	0.29671	0.00016669	561.7987535027296	36.768	0.26653	36.768	36.663	36.93	0					15	8	3	0	0	0	0.28036	1	14346	14346		69.628	5.4204	1	360800			46879	3577	31082	31207	47475	47475					0.026993423579142473
VQAVAVLCTCF	11	Unmodified	_VQAVAVLCTCF_					0	0	0			REV__ENST00000373795.6_1_1:29474819-29474921:-|nuORF	REV__ENST00000373795.6_1_1:29474819-29474921:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.19671630859375	3	385.196322	1152.56714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.596	1	13.596	13.096	14.096	0								0	0	0	0.39826	1	2821	2821		37.508	5.8739	1		+		46880	18687	31083	31208	47476	47476					-0.003044034750018909
VQCISCVYL	9	Unmodified	_VQCISCVYL_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.25244140625	2	514.251188	1026.48782	1.2656	0.00065084	-0.42047	-0.00021623	0.84514	0.00043461	514.2509273901003	24.861	0.61525	24.861	24.757	25.372	0					21	18	2	0	0	0	0.5879	1	7455	7455		23.042	2.0956	1	63373	+		46881	14885	31084	31209	47477	47477					-0.024360504291735197
VQCNAMHP	8	Unmodified	_VQCNAMHP_					0	0	0			REV__ENSG00000138131|ENST00000260702|LOXL4	REV__ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.1968688964844	2	450.196748	898.378942	-0.30524	-0.00013742	0.94387	0.00042493	0.63863	0.00028751	450.19681244531756	36.249	0.091866	36.249	36.214	36.306	0					6	5	2	0	0	0	0.68754	1	11891	11891		35.201	4.883	1	33371	+		46882	14959	31085	31210	47478	47478					-0.07431216608779323
VQCPVFNIK	9	Carbamidomethyl (C)	_VQC(Carbamidomethyl (C))PVFNIK_	VQC(1)PVFNIK		VQC(61)PVFNIK		0	1	0		ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.79736328125	2	552.797152	1103.57975	1.3204	0.00072993	1.0071	0.00055671	2.3275	0.0012866	552.7972854220145	36.084	0.082703	36.084	36.035	36.118	0					5	3	2	0	0	0	0.20551	1	11840	11840		60.972	15.02	1	45205			46883	8543	31086	31211	47479	47479	371				0.0321037597952909
VQCPVFNIK	9	Carbamidomethyl (C)	_VQC(Carbamidomethyl (C))PVFNIK_	VQC(1)PVFNIK		VQC(51)PVFNIK		0	1	0		ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7974243164062	2	552.797152	1103.57975	0.62015	0.00034282	1.1415	0.00063102	1.7617	0.00097384	552.7972562127018	36.36	0.22193	36.36	36.274	36.496	0					9	6	2	0	0	0	0.2873	1	13706	13706		51.335	22.186	1	325460			46884	8543	31086	31211	47480	47480	371				0.0321037597952909
VQCPVFNIK	9	Carbamidomethyl (C)	_VQC(Carbamidomethyl (C))PVFNIK_	VQC(1)PVFNIK		VQC(91)PVFNIK		0	1	0		ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7979125976562	2	552.797152	1103.57975	1.5958	0.00088216	-0.8263	-0.00045678	0.7695	0.00042538	552.7969326151153	36.337	0.29696	36.337	36.242	36.539	0					21	8	3	0	0	0	0.062676	1	14144	14144		90.777	21.149	1	360640			46885	8543	31086	31211	47481	47481	371				0.0321037597952909
VQCPVFNIK	9	Carbamidomethyl (C)	_VQC(Carbamidomethyl (C))PVFNIK_	VQC(1)PVFNIK		VQC(96)PVFNIK		0	1	0		ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	ENST00000310015.10_1_2:174820725-174820848:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.797607421875	2	552.797152	1103.57975	3.6545	0.0020202	-3.539	-0.0019563	0.1155	6.3847E-05	552.7956920593108	36.275	0.61489	36.275	35.898	36.513	0					23	12	3	0	0	0	0.047412	1	14088	14088		96.19	19.416	1	614500			46886	8543	31086	31211	47482	47482	371				0.0321037597952909
VQDDKHFHK	9	Unmodified	_VQDDKHFHK_					0	0	0		XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant;ENSG00000132953|ENST00000255305|XPO4	XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant	XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.2916259765625	2	577.291079	1152.56761	1.7064	0.00098508	-0.7437	-0.00042933	0.96268	0.00055575	577.2905725772706	13.758	0.1161	13.758	13.701	13.817	0					4	2	2	0	0	0	0.0066803	1	3282	3282		123.21	38.047	1	259810			46887	3826	31087	31212	47483	47483					-0.0025752443930286972
VQDIFTYAK	9	Unmodified	_VQDIFTYAK_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7879638671875	2	542.787307	1083.56006	1.8845	0.0010229	-0.55786	-0.0003028	1.3266	0.00072006	542.786919692808	38.873	0.11406	38.873	38.817	38.931	0					8	4	2	0	0	0	0.18505	1	14787	14787		56.434	25.93	1	86776			46888	5126	31088	31213	47484	47484					0.021623232403953807
VQDIFTYAK	9	Unmodified	_VQDIFTYAK_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7877807617188	2	542.787307	1083.56006	2.0252	0.0010992	-0.097226	-5.2773E-05	1.9279	0.0010465	542.7872248030889	38.784	0.20861	38.784	38.678	38.886	0					6	4	2	0	0	0	0.29368	1	15289	15289		51.528	12.722	1	305370			46889	5126	31088	31213	47485	47485					0.021623232403953807
VQEDQRDLIFK	11	Unmodified	_VQEDQRDLIFK_					0	0	0		ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENST00000474757.1_1_X:55757854-55777647:+|nuORF	ENST00000474757.1_1_X:55757854-55777647:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.2486877441406	3	464.249019	1389.72523	-0.14113	-6.5518E-05	-0.41487	-0.0001926	-0.55599	-0.00025812	464.2488475119797	31.92	0.16677	31.92	31.81	31.976	0					9	3	3	0	0	0	0.23231	1	12094	12094		70.412	30.538	1	154780			46890	1699	31089	31214	47486	47486					0.045955103094229344
VQEQIKIE	8	Unmodified	_VQEQIKIE_					0	0	0			REV__MCM9|p.R822Gfs*2|1|0.5|ENSG00000111877|chr6:118815792-118815792|T/-|frameshift_variant	REV__MCM9|p.R822Gfs*2|1|0.5|ENSG00000111877|chr6:118815792-118815792|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7787780761719	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.862	1	26.862	26.362	27.362	0								0	0	0	1.7419	1	8712	8712		29.15	0	1		+		46891	13983	31090	31215	47487	47487					0.051060367233731085
VQFFGTIIT	9	Unmodified	_VQFFGTIIT_					0	0	0			REV__CPNE2|p.T543Pfs*121|1|0.24|ENSG00000140848|chr16:57147632-57147632|C/-|frameshift_variant	REV__CPNE2|p.T543Pfs*121|1|0.24|ENSG00000140848|chr16:57147632-57147632|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2867431640625	2	513.286943	1024.55933	1.2997	0.00066711	0.13047	6.6968E-05	1.4301	0.00073408	513.2871415622596	37.905	0.81186	37.905	37.417	38.228	0					69	26	3	0	0	0	0.27249	1	14748	14748		52.937	20.124	1	858980	+		46892	12630	31091	31216	47488	47488					0.04803528591378381
VQGKTWGPL	9	Unmodified	_VQGKTWGPL_					0	0	0			REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2787170410156	2	493.276909	984.539266	2.7619	0.0013624	0.85384	0.00042118	3.6158	0.0017836	493.27734245883363	38.195	0.42743	38.195	38.099	38.526	0					15	9	2	0	0	0	0.26904	1	15009	15009		53.351	9.2347	1	258930	+		46893	15889	31092	31217	47489	47489					0.04637777651419128
VQGLSLGPSIF	11	Unmodified	_VQGLSLGPSIF_					0	0	0			REV__ENST00000472839.6_1_12:92819564-92822903:+|nuORF	REV__ENST00000472839.6_1_12:92819564-92822903:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.3182983398438	2	559.316232	1116.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.534	1	31.534	31.034	32.034	0								0	0	0	0.41946	1	10870	10870		32.751	4.669	1		+		46894	19498	31093	31218	47490	47490					0.06426585165854704
VQGMFDTYF	9	Unmodified	_VQGMFDTYF_					0	0	0			REV__SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	REV__SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2450561523438	2	554.244418	1106.47428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.857	1	38.857	38.357	39.357	0								0	0	0	0.3368	1	14775	14775		27.882	0	1		+		46895	12942	31094	31219	47491	47491					-0.07469584936757201
VQGVISVPK	9	Unmodified	_VQGVISVPK_					0	0	0		nc|ENSG00000168237|Q8IVS8-7|GLYCTK;nc|ENSG00000168237|Q8IVS8-2|GLYCTK;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;nc|ENSG00000168237|Q8IVS8-3|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	463.7873229980469	2	463.78711	925.559667	0.098858	4.5849E-05	0.072395	3.3576E-05	0.17125	7.9425E-05	463.7873502417745	29.628	0.12483	29.628	29.55	29.675	0					8	4	2	0	0	0	0.38666	1	9374	9374		42.864	2.2917	1	81715			46896	6073	31095	31220	47492	47492					0.09390948311227021
VQGVISVPK	9	Unmodified	_VQGVISVPK_					0	0	0		nc|ENSG00000168237|Q8IVS8-7|GLYCTK;nc|ENSG00000168237|Q8IVS8-2|GLYCTK;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;nc|ENSG00000168237|Q8IVS8-3|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.78668212890625	2	463.78711	925.559667	0.60628	0.00028118	-1.0195	-0.00047284	-0.41324	-0.00019166	463.78654084317253	29.897	0.24876	29.897	29.773	30.022	0					14	6	3	0	0	0	0.061298	1	10734	10734		91.265	37.914	1	501500			46897	6073	31095	31220	47493	47493					0.09390948311227021
VQGVISVPK	9	Unmodified	_VQGVISVPK_					0	0	0		nc|ENSG00000168237|Q8IVS8-7|GLYCTK;nc|ENSG00000168237|Q8IVS8-2|GLYCTK;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;nc|ENSG00000168237|Q8IVS8-3|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	463.78729248046875	2	463.78711	925.559667	-0.15077	-6.9926E-05	0.47446	0.00022005	0.32368	0.00015012	463.78730836938684	29.674	0.12978	29.674	29.587	29.717	0					6	3	2	0	0	0	0.42902	1	10022	10022		39.253	2.0937	1	91011			46898	6073	31095	31220	47494	47494					0.09390948311227021
VQGVISVPK	9	Unmodified	_VQGVISVPK_					0	0	0		nc|ENSG00000168237|Q8IVS8-7|GLYCTK;nc|ENSG00000168237|Q8IVS8-2|GLYCTK;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;nc|ENSG00000168237|Q8IVS8-3|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.7868957519531	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.827	1	29.827	29.327	30.327	0								0	0	0	0.0019965	1	10972	10972		120.87	35.708	1				46899	6073	31095	31220	47495	47495					0.09390948311227021
VQGVQNKI	8	Unmodified	_VQGVQNKI_					0	0	0			REV__ENST00000551130.1_1_12:52635330-52637101:+|nuORF	REV__ENST00000551130.1_1_12:52635330-52637101:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2610778808594	2	443.261259	884.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.119	1	11.119	10.619	11.619	0								0	0	0	1.7419	1	2206	2206		4.6817	0	1		+		46900	20200	31096	31221	47496	47496					0.0610920461731439
VQHGAVYSL	9	Unmodified	_VQHGAVYSL_					0	0	0		ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.25921630859375	2	487.258717	972.50288	-0.3368	-0.00016411	0.79549	0.00038761	0.45869	0.0002235	487.25926129488	34.529	0.32666	34.529	34.246	34.573	0					12	8	3	0	0	0	0.41113	1	12862	12862		40.778	0.20554	1	130850			46901	4578	31097	31222	47497	47497					0.015529007547229412
VQHIQLLQK	9	Unmodified	_VQHIQLLQK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.5610046386719	3	369.560869	1105.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.789	1	26.789	26.289	27.289	0								0	0	0	0.19847	1	8676	8676		51.193	9.7661	1				46902	6307	31098	31223	47498	47498					0.11217400013924816
VQHPFLNVF	9	Unmodified	_VQHPFLNVF_					0	0	0		ENSG00000133878|ENST00000256261|DUSP26	ENSG00000133878|ENST00000256261|DUSP26	ENSG00000133878|ENST00000256261|DUSP26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7969360351562	2	550.798009	1099.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.465	1	46.465	45.965	46.965	0								0	0	0	0.27166	1	18594	18594		40.573	1.5511	1				46903	3878	31099	31224	47499	47499					0.035657530597973164
VQHVLPVGP	9	Unmodified	_VQHVLPVGP_					0	0	0			REV__COL26A1|p.S218Lfs*131|1|0.12|ENSG00000160963|chr7:101544035-101544035|C/-|frameshift_variant	REV__COL26A1|p.S218Lfs*131|1|0.12|ENSG00000160963|chr7:101544035-101544035|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.27740478515625	2	473.279452	944.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.547	1	14.547	14.047	15.047	0								0	0	0	0.34228	1	3644	3644		26.796	1.3459	1		+		46904	12554	31100	31225	47500	47500					0.06986081514037323
VQIECAVVL	9	Unmodified	_VQIECAVVL_					0	0	0			REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF	REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.27471923828125	2	487.272978	972.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.323	1	13.323	12.823	13.823	0								0	0	0	0.32356	1	3064	3064		30.504	0	1		+		46905	12084	31101	31226	47501	47501					0.044038823396363114
VQKIGPEGLV	10	Unmodified	_VQKIGPEGLV_					0	0	0		PKLR|p.V280Wfs*41|1|0.25|ENSG00000143627|chr1:155294609-155294609|C/-|frameshift_variant;PKLR|p.D339Tfs*2|1|0.39|ENSG00000143627|chr1:155294336-155294336|C/-|frameshift_variant;nc|ENSG00000143627|P30613-2|PKLR;ENSG00000143627|ENST00000342741|PKLR	PKLR|p.V280Wfs*41|1|0.25|ENSG00000143627|chr1:155294609-155294609|C/-|frameshift_variant	PKLR|p.V280Wfs*41|1|0.25|ENSG00000143627|chr1:155294609-155294609|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.3103637695312	2	520.310949	1038.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.625	1	41.625	41.125	42.125	0								0	0	0	0.41967	1	16365	16365		24.519	3.5723	1				46906	4573	31102	31227	47502	47502					0.08958602511415847
VQKKGTPVQ	9	Unmodified	_VQKKGTPVQ_					0	0	0			REV__ENST00000578195.6_1_17:29093564-29096961:+|nuORF	REV__ENST00000578195.6_1_17:29093564-29096961:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.7953186035156	2	492.795466	983.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.056	1	15.056	14.556	15.556	0								0	0	0	0.30504	1	3806	3806		34.173	0.65696	1		+		46907	16739	31103	31228	47503	47503					0.08393449197171776
VQKKNKYVV	9	Unmodified	_VQKKNKYVV_					0	0	0			REV__ENSG00000129595|ENST00000261486|EPB41L4A	REV__ENSG00000129595|ENST00000261486|EPB41L4A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8697814941406	3	369.229119	1104.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.09	1	53.09	52.59	53.59	0								0	0	0	0.3428	1	20507	20507		26.693	0	1		+		46908	14552	31104	31229	47504	47504					0.11738284156695045
VQLAPVMQL	9	Unmodified	_VQLAPVMQL_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.7904357910156	2	499.788795	997.563038	0.32645	0.00016315	3.0404	0.0015195	3.3668	0.0016827	499.79038480933923	28.756	0.11451	28.756	28.686	28.8	0					6	4	2	0	0	0	0.1236	1	9002	9002		73.975	22.639	1	99220			46909	11716	31105	31230	47505	47505					0.06415875093591694
VQLEYVPKE	9	Unmodified	_VQLEYVPKE_					0	0	0			REV__SIGLEC14|p.L365Sfs*29|1|0.68|ENSG00000254415|chr19:51643592-51643593|-/A|frameshift_variant	REV__SIGLEC14|p.L365Sfs*29|1|0.68|ENSG00000254415|chr19:51643592-51643593|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.8011474609375	2	552.800414	1103.58628	1.5968	0.00088272	-0.11531	-6.3742E-05	1.4815	0.00081898	552.8003310362996	20.872	1.1613	20.872	20.713	21.874	0					56	23	4	0	0	0	0.063823	1	6819	6819		90.37	5.4543	1	10650000	+		46910	17744	31106	31231	47506	47506					0.03862592411906007
VQLKMILK	8	Unmodified	_VQLKMILK_					0	0	0			REV__ENST00000311893.13_1_12:108962937-108963123:+|nuORF	REV__ENST00000311893.13_1_12:108962937-108963123:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.81719970703125	2	486.817356	971.620159	0.70659	0.00034398	-1.2542	-0.00061057	-0.54762	-0.00026659	486.8168082316956	32.102	0.25634	32.102	32.018	32.274	0					16	6	4	0	0	0	0.26534	1	11763	11763		94.006	11.701	1	592520	+		46911	18275	31107	31232	47507	47507					0.13321342369954436
VQLNMPGSDL	10	Unmodified	_VQLNMPGSDL_					0	0	0		nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2693481445312	2	537.268424	1072.5223	2.0994	0.0011279	-0.33538	-0.00018019	1.764	0.00094775	537.2681918145472	39.14	1.9396	39.14	38.312	40.251	0					175	73	3	0	0	0	0.44601	1	14934	14934		51.193	10.415	1	496210			46912	5353	31108	31233	47508	47508					-0.011065110166782688
VQMQPEKVF	9	Unmodified	_VQMQPEKVF_					0	0	0			REV__SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	REV__SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2908935546875	2	553.289159	1104.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.91	1	44.91	44.41	45.41	0								0	0	0	0.36266	1	17992	17992		21.96	0	1		+		46913	17539	31109	31234	47509	47509					0.015666697426240717
VQMRCKVL	8	Oxidation (M)	_VQM(Oxidation (M))RCKVL_		VQM(1)RCKVL		VQM(71)RCKVL	0	0	1			REV__ENST00000546766.5_1_12:98989167-98989365:+|nuORF	REV__ENST00000546766.5_1_12:98989167-98989365:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.77386474609375	2	496.772622	991.530692	2.884	0.0014327	-0.071571	-3.5555E-05	2.8125	0.0013972	496.7725307179515	40.968	0.49277	40.968	40.735	41.227	0					17	9	2	0	0	0	0.39542	1	16270	16270		71.378	7.1706	1	1592100	+		46914	13234	31110	31235	47510	47510		511			0.034587644189400635
VQNASLIL	8	Unmodified	_VQNASLIL_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;SLC35A2|p.R55H|1|0.15|ENSG00000102100|chrX:48909924-48909924|C/T|missense_variant;nc|ENSG00000102100|P78381-3|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2579650878906	2	429.258185	856.501818	-0.259	-0.00011118	-0.38547	-0.00016547	-0.64447	-0.00027664	429.25801106271865	29.301	0.21688	29.301	29.209	29.426	0					8	5	2	0	0	0	0.35045	1	9849	9849		76.774	2.5191	1	162390			46915	2155	31111	31236	47511	47511					0.0678268638581585
VQNESSGLQLV	11	Unmodified	_VQNESSGLQLV_					0	0	0			REV__ENST00000225724.9_1_17:28849715-28849805:+|nuORF	REV__ENST00000225724.9_1_17:28849715-28849805:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	587.8117065429688	2	587.309135	1172.60372	-1.7451	-0.0010249	2.2878	0.0013436	0.54275	0.00031876	587.3104895474904	33.087	0.12803	33.087	32.99	33.118	0					8	4	2	0	0	0	0.38515	1	11559	11559		53.089	0	1	123850	+		46916	17898	31112	31237	47512	47512					0.02431887946909228
VQNFYNPL	8	Unmodified	_VQNFYNPL_					0	0	0		ENSG00000159261|ENST00000399135|CLDN14	ENSG00000159261|ENST00000399135|CLDN14	ENSG00000159261|ENST00000399135|CLDN14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.75128173828125	2	497.753267	993.491981	-1.1282	-0.00056155	-0.92599	-0.00046092	-2.0542	-0.0010225	497.75255217416066	28.526	0.39619	28.526	28.407	28.803	0					19	15	2	0	0	0	0.60719	1	9213	9213		47.916	1.9636	1	122620			46917	5305	31113	31238	47513	47513					-0.005025016195759235
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	368.8697204589844	3	368.869814	1103.58761	0.073065	2.6952E-05	-0.41176	-0.00015189	-0.3387	-0.00012494	368.86967094308955	20.593	0.55465	20.593	20.512	21.067	0					24	17	3	0	0	0	0.35021	1	5527	5527		45.972	11.8	1	467130			46918	5581	31114	31239	47514	47514					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.8014526367188	2	552.801083	1103.58761	0.61966	0.00034255	-0.076705	-4.2402E-05	0.54295	0.00030014	552.8010401356589	20.928	0.95594	20.928	20.782	21.738	0					57	22	4	0	0	0	0.003936	1	6558	6558		148.04	51.853	1	11617000			46919	5581	31114	31239	47515	47515					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.801513671875	2	552.801083	1103.58761	0.22011	0.00012167	0.24126	0.00013337	0.46136	0.00025504	552.8011781266274	20.631	0.64314	20.631	20.525	21.168	0					54	20	4	0	0	0	0.011389	1	5786	5786		122.18	39.871	1	1385300			46920	5581	31114	31239	47516	47516					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8697204589844	3	368.869814	1103.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.842	1	20.842	20.342	21.342	0								0	0	0	0.080575	1	6816	6816		77.318	11.852	1				46921	5581	31114	31239	47517	47517					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	368.8697814941406	3	368.869814	1103.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.196	1	21.196	20.696	21.696	0								0	0	0	0.17378	1	6991	6991		54.776	3.5836	1				46922	5581	31114	31239	47518	47518					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.801513671875	2	552.801083	1103.58761	0.063451	3.5076E-05	0.59976	0.00033155	0.66321	0.00036662	552.8014612804527	20.855	0.6105	20.855	20.747	21.357	0					21	12	2	0	0	0	0.013878	1	6834	6834		129.68	58.387	1	1023600			46923	5581	31114	31239	47519	47519					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.8697204589844	3	368.869814	1103.58761	-0.11198	-4.1307E-05	-0.2357	-8.6944E-05	-0.34768	-0.00012825	368.8697351304167	20.699	0.66212	20.699	20.599	21.261	0					44	15	4	0	0	0	0.13267	1	5879	5879		71.877	18.941	1	1249300			46924	5581	31114	31239	47520	47520					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.8685607910156	3	368.869814	1103.58761	-0.11157	-4.1155E-05	-0.97973	-0.00036139	-1.0913	-0.00040255	368.8694445067427	21.767	0.57637	21.767	21.294	21.871	0					15	13	2	0	0	0	0.4966	1	6384	6384		32.812	0	1	65894			46925	5581	31114	31239	47521	47521					0.03996271291316589
VQNGKHFKF	9	Unmodified	_VQNGKHFKF_					0	0	0		ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	ENSG00000163586|ENST00000295834|FABP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.8699035644531	3	368.869814	1103.58761	0.90052	0.00033217	-1.1463	-0.00042284	-0.2458	-9.0667E-05	368.8694685264771	20.883	2.0626	20.883	20.726	22.789	0					108	41	5	0	0	0	0.098791	1	6693	6693		79.713	21.483	1	23871000			46926	5581	31114	31239	47522	47522					0.03996271291316589
VQPNINGLY	9	Unmodified	_VQPNINGLY_					0	0	0			REV__ENST00000470400.5_1_3:142720470-142740424:+|nuORF	REV__ENST00000470400.5_1_3:142720470-142740424:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.27301025390625	2	509.271824	1016.5291	-0.10563	-5.3795E-05	2.6178	0.0013332	2.5122	0.0012794	509.2730205312007	24.272	0.2122	24.272	24.155	24.367	0					9	7	2	0	0	0	0.41354	1	7161	7161		40.573	0	1	72009	+		46927	19467	31115	31240	47523	47523					0.021491699261900976
VQPPHGLP	8	Unmodified	_VQPPHGLP_					0	0	0			REV__nc|ENSG00000103496|Q12846-2|STX4	REV__nc|ENSG00000103496|Q12846-2|STX4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.73883056640625	2	422.73742	843.460287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.538	1	19.538	19.038	20.038	0								0	0	0	1.7419	1	5325	5325		37.028	0	1		+		46928	20960	31116	31241	47524	47524					0.03229550417131577
VQPRGMWL	8	Unmodified	_VQPRGMWL_					0	0	0		ENST00000471077.2_1_7:129845089-129845215:-|nuORF	ENST00000471077.2_1_7:129845089-129845215:-|nuORF	ENST00000471077.2_1_7:129845089-129845215:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7632141113281	2	493.765655	985.516756	-1.269	-0.00062659	-2.7183	-0.0013422	-3.9873	-0.0019688	493.7642296109319	15.486	0.2551	15.486	15.397	15.652	0					16	9	2	0	0	0	0.74117	1	3551	3551		28.254	2.8041	1	80905			46929	9848	31117	31242	47525	47525					0.0234185498215993
VQPSKYHFL	9	Unmodified	_VQPSKYHFL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.8037109375	2	559.803291	1117.59203	1.8254	0.0010218	-1.199	-0.00067121	0.62634	0.00035063	559.8025227222844	31.362	0.36343	31.362	31.207	31.571	0					21	7	4	0	0	0	0.13267	1	11707	11707		71.877	20.542	1	1558300			46930	6662	31118	31243	47526	47526					0.03793735714225477
VQQLSNSQDQ	10	Unmodified	_VQQLSNSQDQ_					0	0	0			REV__ENSG00000105866|ENST00000222584|SP4	REV__ENSG00000105866|ENST00000222584|SP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.7733764648438	2	573.772916	1145.53128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.444	1	11.444	10.944	11.944	0								0	0	0	0.4201	1	2224	2224		16.473	0	1		+		46931	13802	31119	31244	47527	47527					-0.03566446126660594
VQQTVQAL	8	Unmodified	_VQQTVQAL_					0	0	0			REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF	REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7535705566406	2	443.753267	885.491981	-1.1597	-0.00051463	0.68781	0.00030522	-0.4719	-0.00020941	443.75361029144784	19.734	0.10488	19.734	19.682	19.787	0					11	4	3	0	0	0	0.67394	1	5389	5389		37.159	5.2042	1	184340	+		46932	20566	31120	31245	47528	47528					0.04465498380432109
VQQVSLVI	8	Unmodified	_VQQVSLVI_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000461021.1_1_3:186505247-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000494445.1_1_3:186505247-186506105:+|nuORF;ENST00000485101.5_1_3:186505555-186505672:+|nuORF;ENST00000421800.1_1_13:29173910-29174120:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2735900878906	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.43	1	41.43	40.93	41.93	0								0	0	0	1.7419	1	16289	16289		45.952	0	1				46933	5432;5192	31121	31246	47529	47529					0.08623259419891838
VQRQCMKL	8	Unmodified	_VQRQCMKL_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;ENST00000462119.5_1_6:111628768-111636625:-|nuORF	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2717590332031	2	503.270247	1004.52594	0.56599	0.00028484	3.0265	0.0015232	3.5925	0.001808	503.27182777406017	33.811	0.11399	33.811	33.756	33.87	0					6	4	2	0	0	0	0.59411	1	11029	11029		50.025	0.58299	1	56383			46934	1025	31122	31247	47530	47530					0.023858802761651532
VQSGHVNLK	9	Unmodified	_VQSGHVNLK_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.27813720703125	2	491.277441	980.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.322	1	17.322	16.822	17.822	0								0	0	0	0.24544	1	4320	4320		44.377	5.1244	1				46935	6735	31123	31248	47531	47531					0.04927992020327565
VQSGHVNLK	9	Unmodified	_VQSGHVNLK_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.27752685546875	2	491.277441	980.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.349	1	17.349	16.849	17.849	0								0	0	0	0.11736	1	4306	4306		67.494	21.521	1				46936	6735	31123	31248	47532	47532					0.04927992020327565
VQSSRLAIP	9	Unmodified	_VQSSRLAIP_					0	0	0			REV__DDIAS|p.L534Yfs*16|2|0.29|ENSG00000165490|chr11:82932934-82932934|T/-|frameshift_variant	REV__DDIAS|p.L534Yfs*16|2|0.29|ENSG00000165490|chr11:82932934-82932934|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.7870178222656	2	485.787641	969.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.953	1	33.953	33.453	34.453	0								0	0	0	0.17378	1	11427	11427		54.776	4.7518	1		+		46937	12684	31124	31249	47533	47533					0.07473162680128098
VQTAAFHVY	9	Unmodified	_VQTAAFHVY_					0	0	0			REV__TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant;REV__ENSG00000197323|ENST00000358465|TRIM33	REV__ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2671508789062	2	518.266542	1034.51853	1.5795	0.00081861	-0.34064	-0.00017654	1.2389	0.00064207	518.2662786605367	43.389	0.32902	43.389	43.307	43.636	0					23	11	3	0	0	0	0.50461	1	17345	17345		31.955	4.0726	1	158750	+		46938	22232;17325	31125	31250	47534	47534					0.002651872717478909
VQTCGLDLPIV	11	Unmodified	_VQTCGLDLPIV_					0	0	0			REV__nc|ENSG00000135063|Q15884|ENTREP1	REV__nc|ENSG00000135063|Q15884|ENTREP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	579.3139038085938	2	579.315374	1156.6162	-1.6795	-0.00097296	-0.90084	-0.00052187	-2.5803	-0.0014948	579.31480832336	25.678	0.34431	25.678	25.561	25.905	0					17	6	4	0	0	0	0.22009	1	8209	8209		71.877	0	1	1850000	+		46939	14780	31126	31251	47535	47535					0.04415208085561062
VQTDRLQVQ	9	Unmodified	_VQTDRLQVQ_					0	0	0			REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7992553710938	2	543.798737	1085.58292	1.9961	0.0010855	-1.1597	-0.00063062	0.83641	0.00045484	543.7981304160695	18.564	0.31445	18.564	18.404	18.719	0					9	6	2	0	0	0	0.16806	1	5593	5593		65.465	0.30814	1	746000	+		46940	18419	31127	31252	47536	47536					0.0435534235787145
VQTIKSRPA	9	Unmodified	_VQTIKSRPA_					0	0	0			REV__ENST00000356322.10_1_19:52529168-52531547:-|nuORF	REV__ENST00000356322.10_1_19:52529168-52531547:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.3011169433594	2	500.300916	998.587279	0.36946	0.00018484	-0.17515	-8.7628E-05	0.19431	9.7212E-05	500.30059841821685	23.657	0.10692	23.657	23.595	23.702	0					8	3	3	0	0	0	0.45358	1	6885	6885		37.159	2.9866	1	74560	+		46941	18519	31128	31253	47537	47537					0.08792851571456595
VQTVAAEGV	9	Unmodified	_VQTVAAEGV_					0	0	0			REV__nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	REV__nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.23748779296875	2	437.23745	872.460347	-0.92568	-0.00040474	0.54661	0.000239	-0.37907	-0.00016574	437.23769287585384	20.061	0.40687	20.061	19.842	20.248	0					30	13	3	0	0	0	0.35021	1	5591	5591		45.972	3.5761	1	630800	+		46942	21008	31129	31254	47538	47538					0.019015056264720442
VQTVSAGALG	10	Unmodified	_VQTVSAGALG_					0	0	0		nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	451.7502746582031	2	451.750724	901.486896	-0.32139	-0.00014519	-0.73875	-0.00033373	-1.0601	-0.00047892	451.75045071269875	23.904	0.1438	23.904	23.842	23.986	0					9	5	2	0	0	0	0.44601	1	6978	6978		51.193	1.7511	1	87007			46943	1450	31130	31255	47539	47539					0.032211945178119095
VQVEVLTSLK	10	Unmodified	_VQVEVLTSLK_					0	0	0		KIAA1755|p.P752Lfs*11|1|0.15|ENSG00000149633|chr20:38223551-38223551|G/-|frameshift_variant;ENSG00000149633|ENST00000279024|KIAA1755	KIAA1755|p.P752Lfs*11|1|0.15|ENSG00000149633|chr20:38223551-38223551|G/-|frameshift_variant	KIAA1755|p.P752Lfs*11|1|0.15|ENSG00000149633|chr20:38223551-38223551|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	372.5591125488281	3	372.560535	1114.65977	0.33194	0.00012367	-0.50589	-0.00018847	-0.17394	-6.4804E-05	372.56027144002496	18.262	0.17198	18.262	18.118	18.29	0					11	4	3	0	0	0	0.44292	1	4700	4700		51.528	2.9262	1	113510			46944	4898	31131	31256	47540	47540					0.10703140854366211
VQVLQVQVGQ	10	Unmodified	_VQVLQVQVGQ_					0	0	0			REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.54864501953125	3	366.548629	1096.62406	0.47339	0.00017352	-0.86074	-0.0003155	-0.38735	-0.00014198	366.54839556286606	13.552	0.37556	13.552	13.445	13.82	0					18	10	2	0	0	0	0.60076	1	3100	3100		46.457	0	1	235330	+		46945	19903	31132	31257	47541	47541					0.0796110339738334
VQVNLSLLG	9	Unmodified	_VQVNLSLLG_					0	0	0		SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant;nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP;SPHKAP|p.S939Pfs*31|1|0.11|ENSG00000153820|chr2:228018039-228018039|A/-|frameshift_variant	SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant	SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7846984863281	2	471.784567	941.554582	0.58867	0.00027773	-0.34964	-0.00016495	0.23904	0.00011277	471.78440482823623	43.341	0.2145	43.341	43.246	43.461	0					25	12	3	0	0	0	0.42902	1	16947	16947		39.253	0.44669	1	174030			46946	5061	31133	31258	47542	47542					0.0814664444861819
VQVQVGQR	8	Unmodified	_VQVQVGQR_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2644348144531	2	457.264333	912.514114	0.72171	0.00033001	-0.30227	-0.00013822	0.41945	0.0001918	457.26407678316514	47.289	1.3985	47.289	47.041	48.439	0					133	83	2	0	0	0	0.79719	1	18203	18203		18.324	0	1	252900	+		46947	16331	31134	31259	47543	47543					0.05435722848858404
VQWCESVCLA	10	Unmodified	_VQWCESVCLA_					0	0	0			REV__GLIS1|p.L553Cfs*97|2|0.21|ENSG00000174332|chr1:53509168-53509168|G/-|frameshift_variant	REV__GLIS1|p.L553Cfs*97|2|0.21|ENSG00000174332|chr1:53509168-53509168|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7603759765625	2	569.257002	1136.49945	1.7563	0.0009998	1.2906	0.00073471	3.047	0.0017345	569.2577401648472	36.08	0.20245	36.08	35.98	36.183	0					8	5	2	0	0	0	0.64178	1	13584	13584		29.15	0	1	64749	+		46948	20693	31135	31260	47544	47544					-0.06333853405794798
VQWLLSPDEE	10	Unmodified	_VQWLLSPDEE_					0	0	0			REV__CACNA2D1|p.R197H|1|0.27|ENSG00000153956|chr7:82084837-82084837|C/T|missense_variant	REV__CACNA2D1|p.R197H|1|0.27|ENSG00000153956|chr7:82084837-82084837|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	608.2974853515625	2	608.298236	1214.58192	-1.9487	-0.0011854	-1.2339	-0.00075057	-3.1826	-0.0019359	608.2971279643323	26.077	0.21845	26.077	25.984	26.202	0					9	5	2	0	0	0	0.54861	1	8352	8352		27.882	16.371	1	111010	+		46949	12316	31136	31261	47545	47545					-0.01678916801665764
VQYAIKNIFK	10	Unmodified	_VQYAIKNIFK_					0	0	0		ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	408.5764465332031	3	408.576408	1222.70739	0.76879	0.00031411	-0.63683	-0.0002602	0.13195	5.3913E-05	408.5761341371269	37.51	0.30769	37.51	37.4	37.708	0					9	6	2	0	0	0	0.45669	1	14686	14686		50.034	18.399	1	352840			46950	10682	31137	31262	47546	47546					0.10494839845205206
VQYLVNPGV	9	Unmodified	_VQYLVNPGV_					0	0	0		ENSG00000188818|ENST00000283441|ZDHHC11	ENSG00000188818|ENST00000283441|ZDHHC11	ENSG00000188818|ENST00000283441|ZDHHC11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7745361328125	2	494.776742	987.538931	-0.64569	-0.00031947	-3.6764	-0.001819	-4.3221	-0.0021385	494.7749996104297	27.467	0.22003	27.467	27.357	27.577	0					8	4	3	0	0	0	0.1236	1	9845	9845		73.975	5.3489	1	222140			46951	7275	31138	31263	47547	47547					0.0446635793156247
VQYSNLPTK	9	Unmodified	_VQYSNLPTK_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2832641601562	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.432	1	18.432	17.932	18.932	0								0	0	0	0.241	1	5391	5391		37.812	7.3079	1				46952	3533	31139	31264	47548	47548					0.032974390976505674
VRAAAQAR	8	Unmodified	_VRAAAQAR_					0	0	0		ENSG00000069424|ENST00000378083|KCNAB2	ENSG00000069424|ENST00000378083|KCNAB2	ENSG00000069424|ENST00000378083|KCNAB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.750732421875	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.936	1	45.936	45.436	46.436	0								0	0	0	1.7419	1	18400	18400		19.36	0	1				46953	1435	31140	31265	47549	47549					0.06114873397223164
VRAHTKAS	8	Unmodified	_VRAHTKAS_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.25128173828125	2	435.251226	868.487899	0.67358	0.00029318	-0.028723	-1.2502E-05	0.64486	0.00028067	435.2511148447803	46.197	1.0403	46.197	45.976	47.016	0					80	63	2	0	0	0	0.65276	1	17230	17230		40.573	8.6178	1	131510	+		46954	17314	31141	31266	47550	47550					0.048394536773685104
VRAHTKAS	8	Unmodified	_VRAHTKAS_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.2508544921875	2	435.251226	868.487899	0.82777	0.00036029	-0.29988	-0.00013052	0.52789	0.00022976	435.25097981463324	46.185	1.3887	46.185	45.832	47.221	0					148	79	3	0	0	0	0.79719	1	17984	17984		18.324	0	1	328570	+		46955	17314	31141	31266	47551	47551					0.048394536773685104
VRAPCLLR	8	Unmodified	_VRAPCLLR_					0	0	0		ENST00000535372.1_1_6:160182454-160183030:-|nuORF;ENST00000546087.5_2_6:160182454-160182694:-|nuORF	ENST00000535372.1_1_6:160182454-160183030:-|nuORF	ENST00000535372.1_1_6:160182454-160183030:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2850341796875	2	464.281472	926.548391	2.6043	0.0012091	1.9795	0.00091903	4.5838	0.0021282	464.283376683072	41.955	0.25473	41.955	41.84	42.095	0					12	7	3	0	0	0	0.72381	1	16713	16713		30.504	0	1	76659			46956	10479	31142	31267	47552	47552					0.08217847736102613
VRCFRSSLQ	9	Unmodified	_VRCFRSSLQ_					0	0	0		ENST00000317633.13_2_5:70203783-70203822:+|nuORF	ENST00000317633.13_2_5:70203783-70203822:+|nuORF	ENST00000317633.13_2_5:70203783-70203822:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2875366210938	2	548.290025	1094.5655	-1.5072	-0.00082639	-1.5664	-0.00085882	-3.0736	-0.0016852	548.2891940667529	29.204	0.20747	29.204	29.13	29.337	0					8	5	2	0	0	0	0.36892	1	9784	9784		44.377	1.981	1	189960			46957	8587	31143	31268	47553	47553					0.021997235512571933
VRCLDRVR	8	Unmodified	_VRCLDRVR_					0	0	0			REV__BRF2|p.P374Lfs*16|1|0.2|ENSG00000104221|chr8:37844629-37844629|G/-|frameshift_variant	REV__BRF2|p.P374Lfs*16|1|0.2|ENSG00000104221|chr8:37844629-37844629|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.7928771972656	2	508.792735	1015.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.388	1	42.388	41.888	42.888	0								0	0	0	1.7419	1	13486	13486		38.806	1.647	1		+		46958	12297	31144	31269	47554	47554					0.06375447133723355
VRCMHLLL	8	Oxidation (M)	_VRCM(Oxidation (M))HLLL_		VRCM(1)HLLL		VRCM(45)HLLL	0	0	1		PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant;nc|ENSG00000130508|Q92626-2|PXDN;PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant;PXDN|p.N865Mfs*25|3|0.42|ENSG00000130508|chr2:1649188-1649188|G/-|frameshift_variant;PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant;PXDN|p.N1190Mfs*12|1|0.22|ENSG00000130508|chr2:1648211-1648211|T/-|frameshift_variant;PXDN|p.R1242Pfs*22|1|0.07|ENSG00000130508|chr2:1644636-1644637|-/AG|frameshift_variant;PXDN|p.E1339Lfs*66|1|0.26|ENSG00000130508|chr2:1639361-1639362|-/AG|frameshift_variant;ENSG00000130508|ENST00000252804|PXDN	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7739562988281	2	500.775165	999.535777	-0.046761	-2.3417E-05	-0.93151	-0.00046648	-0.97827	-0.00048989	500.77456683335834	33.27	0.26711	33.27	33.164	33.431	0					18	10	2	0	0	0	0.6282	1	10789	10789		44.531	7.5026	1	92795			46959	11991	31145	31270	47555	47555		470			0.03599068281562268
VRCMHLLL	8	Oxidation (M)	_VRCM(Oxidation (M))HLLL_		VRCM(1)HLLL		VRCM(55)HLLL	0	0	1		PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant;nc|ENSG00000130508|Q92626-2|PXDN;PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant;PXDN|p.N865Mfs*25|3|0.42|ENSG00000130508|chr2:1649188-1649188|G/-|frameshift_variant;PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant;PXDN|p.N1190Mfs*12|1|0.22|ENSG00000130508|chr2:1648211-1648211|T/-|frameshift_variant;PXDN|p.R1242Pfs*22|1|0.07|ENSG00000130508|chr2:1644636-1644637|-/AG|frameshift_variant;PXDN|p.E1339Lfs*66|1|0.26|ENSG00000130508|chr2:1639361-1639362|-/AG|frameshift_variant;ENSG00000130508|ENST00000252804|PXDN	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7745666503906	2	500.775165	999.535777	-0.99033	-0.00049593	0.16554	8.2897E-05	-0.8248	-0.00041304	500.77518571839056	33.316	0.25536	33.316	33.232	33.487	0					24	10	3	0	0	0	0.55361	1	11177	11177		54.765	15.959	1	296180			46960	11991	31145	31270	47556	47556		470			0.03599068281562268
VRCMHLLL	8	Oxidation (M)	_VRCM(Oxidation (M))HLLL_		VRCM(1)HLLL		VRCM(55)HLLL	0	0	1		PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant;nc|ENSG00000130508|Q92626-2|PXDN;PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant;PXDN|p.N865Mfs*25|3|0.42|ENSG00000130508|chr2:1649188-1649188|G/-|frameshift_variant;PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant;PXDN|p.N1190Mfs*12|1|0.22|ENSG00000130508|chr2:1648211-1648211|T/-|frameshift_variant;PXDN|p.R1242Pfs*22|1|0.07|ENSG00000130508|chr2:1644636-1644637|-/AG|frameshift_variant;PXDN|p.E1339Lfs*66|1|0.26|ENSG00000130508|chr2:1639361-1639362|-/AG|frameshift_variant;ENSG00000130508|ENST00000252804|PXDN	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	PXDN|p.G470Rfs*19|1|0.14|ENSG00000130508|chr2:1664962-1664963|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.774658203125	2	500.775165	999.535777	-2.1246	-0.001064	1.441	0.00072163	-0.68362	-0.00034234	500.77581082462325	33.289	0.27967	33.289	33.171	33.451	0					18	8	3	0	0	0	0.55361	1	11673	11673		54.765	12.29	1	397530			46961	11991	31145	31270	47557	47557		470			0.03599068281562268
VRCSAQSE	8	Unmodified	_VRCSAQSE_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	440.20306396484375	2	440.203084	878.391615	0.7041	0.00030995	-0.42625	-0.00018764	0.27785	0.00012231	440.2028678026865	39.823	0.79834	39.823	39.469	40.268	0					48	18	4	0	0	0	0.5676	1	15843	15843		53.351	2.016	1	1850100	+		46962	13492	31146	31271	47558	47558					-0.052444819448851376
VRCVFKRP	8	Unmodified	_VRCVFKRP_					0	0	0		HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|19|1|anti-sense	HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|19|1|anti-sense	HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|19|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	335.5329895019531	3	335.532256	1003.57494	1.6129	0.00054118	0.55097	0.00018487	2.1639	0.00072605	335.53242374721805	22.029	0.27052	22.029	21.919	22.19	0					14	5	4	0	0	0	0.78999	1	7278	7278		10.866	10.866	1	1712400			46963	11196	31147	31272	47559	47559					0.07329536627435118
VRCVWLPVD	9	Unmodified	_VRCVWLPVD_					0	0	0		ENST00000442747.5_1_3:48538615-48541864:-|nuORF	ENST00000442747.5_1_3:48538615-48541864:-|nuORF	ENST00000442747.5_1_3:48538615-48541864:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2926025390625	2	543.791869	1085.56919	3.6556	0.0019879	2.6056	0.0014169	6.2612	0.0034048	543.7932498571804	34.934	0.611	34.934	34.651	35.262	0					32	12	4	0	0	0	0.25716	1	13413	13413		54.776	13.35	1	2073300			46964	9591	31148	31273	47560	47560					0.029823933251009294
VRDEAVQK	8	Unmodified	_VRDEAVQK_					0	0	0		nc|ENSG00000124678|Q8WWU5-3|TCP11;nc|ENSG00000124678|Q8WWU5-2|TCP11;nc|ENSG00000124678|Q8WWU5-6|TCP11;nc|ENSG00000124678|Q8WWU5-4|TCP11;ENSG00000124678|ENST00000311875|TCP11;nc|ENSG00000124678|Q8WWU5-5|TCP11;nc|ENSG00000124678|Q8WWU5-7|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7611999511719	2	472.761623	943.508694	-0.57375	-0.00027125	-0.89743	-0.00042427	-1.4712	-0.00069552	472.76132732301687	24.356	0.36754	24.356	24.079	24.447	0					13	7	3	0	0	0	0.53424	1	8419	8419		56.721	7.185	1	197780			46965	3392	31149	31274	47561	47561					0.034679992663768644
VRDGGQQPLS	10	Unmodified	_VRDGGQQPLS_					0	0	0		nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;ENSG00000262209|ENST00000576222|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7763061523438	2	528.775262	1055.53597	0.15402	8.144E-05	3.5222	0.0018625	3.6762	0.0019439	528.7767084871939	24.988	0.13126	24.988	24.937	25.069	0					6	4	2	0	0	0	0.62235	1	7732	7732		31.53	15.057	1	44787			46966	8055	31150	31275	47562	47562					0.0104248280676984
VRDIFLDD	8	Unmodified	_VRDIFLDD_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7574462890625	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.557	1	37.557	37.057	38.057	0								0	0	0	1.7419	1	14247	14247		87.754	16.459	1				46967	5794	31151	31276	47563	47563					0.0013717717222334613
VREKENNP	8	Unmodified	_VREKENNP_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2575988769531	2	493.256705	984.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.655	1	11.655	11.155	12.155	0								0	0	0	1.7419	1	2223	2223		10.866	0.6003	1				46968	6406	31152	31277	47564	47564					0.0059881126099980975
VRFTVCLLIN	10	Unmodified	_VRFTVCLLIN_					0	0	0		NCAPG|p.R117T|1|0.37|ENSG00000109805|chr4:17812951-17812951|G/C|missense_variant	NCAPG|p.R117T|1|0.37|ENSG00000109805|chr4:17812951-17812951|G/C|missense_variant	NCAPG|p.R117T|1|0.37|ENSG00000109805|chr4:17812951-17812951|G/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.3436279296875	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.714	1	51.714	51.214	52.214	0								0	0	0	0.40862	1	19173	19173		27.882	1.1893	1				46969	11844	31153	31278	47565	47565					0.08763210939082455
VRFVSHLKQ	9	Unmodified	_VRFVSHLKQ_					0	0	0			REV__AGTR2|p.R330H|1|0.09|ENSG00000180772|chrX:116173269-116173269|G/A|missense_variant	REV__AGTR2|p.R330H|1|0.09|ENSG00000180772|chrX:116173269-116173269|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.3289794921875	2	557.330008	1112.64546	0.55167	0.00030746	-2.9045	-0.0016187	-2.3528	-0.0013113	557.3285126226586	21.388	0.17886	21.388	21.34	21.518	0					8	4	3	0	0	0	0.44593	1	6800	6800		37.812	4.9991	1	334710	+		46970	12114	31154	31279	47566	47566					0.09364533216739801
VRGEGSIKV	9	Unmodified	_VRGEGSIKV_					0	0	0			REV__nc|ENSG00000136068|O75369-7|FLNB	REV__nc|ENSG00000136068|O75369-7|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7793273925781	2	472.779816	943.545079	-0.02684	-1.2689E-05	-0.47001	-0.00022221	-0.49685	-0.0002349	472.77951924395757	19.302	0.12749	19.302	19.222	19.349	0					5	3	2	0	0	0	0.44593	1	4977	4977		37.812	0	1	181730	+		46971	14845	31155	31280	47567	47567					0.07104876163089102
VRGGACPN	8	Unmodified	_VRGGACPN_					0	0	0			REV__ENST00000356836.10_1_1:44445588-44445732:+|nuORF	REV__ENST00000356836.10_1_1:44445588-44445732:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	387.1893615722656	2	387.18978	772.365007	-0.021752	-8.4222E-06	-0.074814	-2.8967E-05	-0.096566	-3.739E-05	387.18975040829685	17.044	0.18596	17.044	16.923	17.109	0					9	6	2	0	0	0	0.78216	1	3983	3983		8.8223	0	1	71432	+		46972	18526	31156	31281	47568	47568					-0.030281260455581105
VRGPSGPR	8	Unmodified	_VRGPSGPR_					0	0	0		ENST00000481424.5_1_7:99214612-99216222:+|nuORF	ENST00000481424.5_1_7:99214612-99216222:+|nuORF	ENST00000481424.5_1_7:99214612-99216222:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	413.2383728027344	2	413.238119	824.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.435	1	46.435	45.935	46.935	0								0	0	0	1.7419	1	17849	17849		24.203	4.8428	1				46973	9957	31157	31282	47569	47569					0.04243184505901354
VRGVHLVGAQ	10	Unmodified	_VRGVHLVGAQ_					0	0	0			REV__ENSG00000175766|ENST00000318682|EIF4E1B	REV__ENSG00000175766|ENST00000318682|EIF4E1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.76416015625	2	518.306532	1034.59851	1.5753	0.00081649	-1.8734	-0.00097101	-0.29814	-0.00015453	518.3054557304632	14.499	0.52995	14.499	14.267	14.797	0					21	11	4	0	0	0	0.46215	1	3831	3831		49.442	5.3247	1	1803600	+		46974	16629	31158	31283	47570	47570					0.08259673665611444
VRGVYITN	8	Unmodified	_VRGVYITN_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2607727050781	2	461.261259	920.507966	0.83751	0.00038631	-2.0449	-0.00094324	-1.2074	-0.00055693	461.26036176088934	31.563	0.51541	31.563	31.403	31.918	0					16	10	2	0	0	0	0.29286	1	11825	11825		84.916	23.944	1	1172900	+		46975	13299	31159	31284	47571	47571					0.044532046173117124
VRHKSTRK	8	Unmodified	_VRHKSTRK_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant;ROCK1|p.W122Lfs*25|1|0.4|ENSG00000067900|chr18:21049143-21049144|-/A|frameshift_variant;ROCK1|p.L268Yfs*6|1|0.3|ENSG00000067900|chr18:21042582-21042582|A/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.31298828125	2	506.312149	1010.60975	2.9358	0.0014864	-0.40266	-0.00020387	2.5331	0.0012825	506.31200536257063	43.697	0.28852	43.697	43.512	43.801	0					13	8	2	0	0	0	0.76187	1	17469	17469		25.574	25.574	1	135860			46976	1417	31160	31285	47572	47572					0.1048649575974423
VRIAGASLLK	10	Unmodified	_VRIAGASLLK_					0	0	0			REV__PRPS1|p.T242I|1|0.5|ENSG00000147224|chrX:107647626-107647626|C/T|missense_variant	REV__PRPS1|p.T242I|1|0.5|ENSG00000147224|chrX:107647626-107647626|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.2255554199219	3	343.225598	1026.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.493	1	18.493	17.993	18.993	0								0	0	0	0.14595	1	5546	5546		73.841	20.752	1		+		46977	21419	31161	31286	47573	47573					0.14270301502278926
VRKKGHGK	8	Unmodified	_VRKKGHGK_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.2918701171875	2	455.290685	908.566818	2.4992	0.0011379	0.37181	0.00016928	2.871	0.0013071	455.2908059283534	31.101	1.4603	31.101	30.995	32.455	0					60	29	3	0	0	0	0.70055	1	11604	11604		33.516	14.156	1	647640			46978	5566	31162	31287	47574	47574					0.10887725702332318
VRLGGLMAGDP	11	Unmodified	_VRLGGLMAGDP_					0	0	0			REV__ENST00000569969.5_2_16:28993234-28993426:+|nuORF	REV__ENST00000569969.5_2_16:28993234-28993426:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2921142578125	2	543.292233	1084.56991	2.0057	0.0010897	0.29468	0.0001601	2.3004	0.0012498	543.7941149068276	35.011	0.59788	35.011	34.761	35.359	0					49	17	4	0	0	0	0.5473	1	13493	13493		40.778	0	1	714680	+		46979	20373	31163	31288	47575	47575					0.031011879741527082
VRLGPSSGLL	10	Unmodified	_VRLGPSSGLL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.8033752441406	2	499.803291	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.48	1	41.48	40.98	41.98	0								0	0	0	0.29806	1	16502	16502		51.193	3.5354	1				46980	5738	31164	31289	47576	47576					0.0931373571424956
VRLMLTLTP	9	Unmodified	_VRLMLTLTP_					0	0	0		STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant;ENSG00000163527|ENST00000295770|STT3B	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.3162841796875	2	522.31772	1042.62089	-1.3069	-0.00068263	-0.54362	-0.00028394	-1.8505	-0.00096657	522.3172261009868	32.642	0.35222	32.642	32.41	32.762	0					17	11	2	0	0	0	0.48389	1	11331	11331		34.173	3.6689	1	83695			46981	5570	31165	31290	47577	47577					0.1012813701900086
VRLQKGASLQ	10	Unmodified	_VRLQKGASLQ_					0	0	0		IGSF9|p.V341*|1|0.31|ENSG00000085552|chr1:159934273-159934273|C/-|frameshift_variant;IGSF9|p.P351Hfs*30|1|0.34|ENSG00000085552|chr1:159934242-159934242|G/-|frameshift_variant;ENST00000476102.1_1_1:159900586-159913268:-|nuORF;IGSF9|p.V639Yfs*114|1|0.36|ENSG00000085552|chr1:159930338-159930338|C/-|frameshift_variant;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	IGSF9|p.V341*|1|0.31|ENSG00000085552|chr1:159934273-159934273|C/-|frameshift_variant	IGSF9|p.V341*|1|0.31|ENSG00000085552|chr1:159934273-159934273|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.22418212890625	3	367.224257	1098.65094	0.27073	9.9418E-05	-0.40286	-0.00014794	-0.13213	-4.8521E-05	367.22406700819903	19.885	0.16906	19.885	19.826	19.995	0					6	3	2	0	0	0	0.1998	1	6372	6372		79.489	1.2253	1	578820			46982	1730	31166	31291	47578	47578					0.10556212008555121
VRLTCHAR	8	Unmodified	_VRLTCHAR_					0	0	0		nc|ENSG00000188487|Q1MX18-4|INSC;nc|ENSG00000188487|Q1MX18-6|INSC;ENSG00000188487|ENST00000379556|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18|INSC	nc|ENSG00000188487|Q1MX18-4|INSC	nc|ENSG00000188487|Q1MX18-4|INSC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.26324462890625	2	478.266353	954.518153	-2.9034	-0.0013886	-3.8464	-0.0018396	-6.7498	-0.0032282	478.2648370986222	18.967	0.14569	18.967	18.915	19.061	0					5	3	2	0	0	0	0.63077	1	5087	5087		44.117	0	1	83277			46983	7253	31167	31292	47579	47579					0.039074890709116517
VRLTLASFT	9	Unmodified	_VRLTLASFT_					0	0	0		ENSG00000204315|ENST00000375156|FKBPL	ENSG00000204315|ENST00000375156|FKBPL	ENSG00000204315|ENST00000375156|FKBPL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.86920166015625	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.644	1	37.644	37.144	38.144	0								0	0	0	0.35899	1	12720	12720		23.523	0	1				46984	7692	31168	31293	47580	47580					0.0781033333993264
VRNTNQIL	8	Unmodified	_VRNTNQIL_					0	0	0		RNF6|p.R297I|1|0.13|ENSG00000127870|chr13:26214992-26214992|C/A|missense_variant	RNF6|p.R297I|1|0.13|ENSG00000127870|chr13:26214992-26214992|C/A|missense_variant	RNF6|p.R297I|1|0.13|ENSG00000127870|chr13:26214992-26214992|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2778015136719	2	479.277441	956.540328	-0.31461	-0.00015078	1.0792	0.00051724	0.76459	0.00036645	479.2779469436534	48.349	0.98209	48.349	47.997	48.979	0					79	60	2	0	0	0	0.7126	1	16095	16095		31.955	3.7006	1	72662			46985	22352	31169	31294	47581	47581					0.06031992020336929
VRPGRRKPG	9	Unmodified	_VRPGRRKPG_					0	0	0			REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.8207702636719	2	511.820141	1021.62573	1.4103	0.00072184	-0.58244	-0.00029811	0.8279	0.00042373	511.8199126606814	11.576	0.13531	11.576	11.515	11.651	0					10	4	3	0	0	0	0.61124	1	2281	2281		12.207	12.207	1	429800	+		46986	19627	31170	31295	47582	47582					0.11578201996655935
VRPLRGTD	8	Unmodified	_VRPLRGTD_					0	0	0			REV__ENST00000556166.2_1_15:26870621-26874195:-|nuORF	REV__ENST00000556166.2_1_15:26870621-26874195:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2633972167969	2	457.264333	912.514114	-0.71021	-0.00032475	-0.18907	-8.6453E-05	-0.89927	-0.00041121	457.2640777866158	54.461	0.11595	54.461	54.394	54.51	0					13	7	2	0	0	0	0.76283	1	16505	16505		25.45	6.0902	1	65599	+		46987	20250	31171	31296	47583	47583					0.054357228488470355
VRPQPPLQSR	10	Unmodified	_VRPQPPLQSR_					0	0	0			REV__ABCA7|p.L1758P|1|0.44|ENSG00000064687|chr19:1058741-1058741|T/C|missense_variant	REV__ABCA7|p.L1758P|1|0.44|ENSG00000064687|chr19:1058741-1058741|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.343994140625	2	589.343646	1176.67274	0.36806	0.00021691	-0.55375	-0.00032635	-0.1857	-0.00010944	589.3433029545495	52.813	0.63172	52.813	52.493	53.124	0					72	40	2	0	0	0	0.66185	1	16122	16122		26.693	5.746	1	119360	+		46988	12029	31172	31297	47584	47584					0.09147016757128767
VRPREVDI	8	Unmodified	_VRPREVDI_					0	0	0		ENST00000559405.5_1_15:49913321-49913456:+|nuORF	ENST00000559405.5_1_15:49913321-49913456:+|nuORF	ENST00000559405.5_1_15:49913321-49913456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2849426269531	2	492.285266	982.555979	-1.1037	-0.00054336	1.4874	0.00073222	0.38363	0.00018886	492.285811998322	53.374	0.22425	53.374	53.286	53.51	0					21	14	2	0	0	0	0.76187	1	16281	16281		30.504	6.3009	1	166660			46989	10679	31173	31298	47585	47585					0.06400278537375925
VRPRTLSA	8	Unmodified	_VRPRTLSA_					0	0	0		ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.27459716796875	2	450.274701	898.534849	-0.26344	-0.00011862	0.11394	5.1306E-05	-0.14949	-6.7313E-05	450.2746637704383	52.944	0.4236	52.944	52.813	53.237	0					65	26	4	0	0	0	0.7976	1	19424	19424		20.947	4.4738	1	808170			46990	9928	31174	31299	47586	47586					0.08152313228515595
VRPRVAAG	8	Unmodified	_VRPRVAAG_					0	0	0		ENST00000496425.1_1_20:62373927-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	413.25665283203125	2	413.256311	824.49807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.059	1	55.059	54.559	55.559	0								0	0	0	1.7419	1	16093	16093		20.482	0	1				46991	10117	31175	31300	47587	47587					0.07880061402613592
VRPSRLGG	8	Unmodified	_VRPSRLGG_					0	0	0			REV__ENST00000472723.1_1_9:130496559-130497006:-|nuORF	REV__ENST00000472723.1_1_9:130496559-130497006:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	421.2530212402344	2	421.253769	840.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.43	1	48.43	47.93	48.93	0								0	0	0	1.7419	1	16083	16083		18.324	0	1		+		46992	15753	31176	31301	47588	47588					0.06635757540004761
VRPVSVTLQ	9	Unmodified	_VRPVSVTLQ_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.80340576171875	2	499.803291	997.59203	-1.038	-0.00051881	2.6758	0.0013374	1.6377	0.00081855	499.80381360896405	30.05	0.13951	30.05	29.984	30.123	0					10	5	2	0	0	0	0.19605	1	9830	9830		62.107	0	1	202930	+		46993	21069	31177	31302	47589	47589					0.0931373571424956
VRQEMRRQ	8	Unmodified	_VRQEMRRQ_					0	0	0		WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant;ENSG00000015285|ENST00000376701|WAS	WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant	WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	368.2012939453125	3	368.201458	1101.58254	0.76286	0.00028089	-1.4037	-0.00051686	-0.64089	-0.00023598	368.2009440701498	15.604	0.45827	15.604	15.533	15.991	0					21	11	4	0	0	0	0.65276	1	4063	4063		34.173	0	1	1438700			46994	1078	31178	31303	47590	47590					0.03581644157065966
VRQGLGPA	8	Unmodified	_VRQGLGPA_					0	0	0		ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4;ENST00000470209.5_1_X:153173185-153178999:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.23529052734375	2	399.235045	796.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.98	1	13.98	13.48	14.48	0								0	0	0	1.7419	1	2884	2884		4.6817	0	1				46995	1823	31179	31304	47591	47591					0.04916666274380077
VRQIRGPQK	9	Unmodified	_VRQIRGPQK_					0	0	0			REV__nc|ENSG00000100883|P61011-2|SRP54	REV__nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	361.2253723144531	3	361.22448	1080.65161	1.4313	0.00051701	0.83392	0.00030123	2.2652	0.00081824	361.2247753626458	16.472	0.16795	16.472	16.363	16.531	0					11	3	4	0	0	0	0.48389	1	4727	4727		34.173	0.25091	1	1034800	+		46996	13576	31180	31305	47592	47592					0.11451051448261751
VRQIRGPQK	9	Unmodified	_VRQIRGPQK_					0	0	0			REV__nc|ENSG00000100883|P61011-2|SRP54	REV__nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	361.2252502441406	3	361.22448	1080.65161	1.1935	0.00043111	0.97345	0.00035163	2.1669	0.00078274	361.22478350406686	16.491	0.21604	16.491	16.384	16.6	0					10	4	3	0	0	0	0.33044	1	4585	4585		47.657	2.6351	1	2564100	+		46997	13576	31180	31305	47593	47593					0.11451051448261751
VRQLTFHQ	8	Unmodified	_VRQLTFHQ_					0	0	0			REV__ENST00000571782.1_1_17:4647099-4647876:+|nuORF	REV__ENST00000571782.1_1_17:4647099-4647876:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7877807617188	2	514.785433	1027.55631	0.024425	1.2574E-05	4.318	0.0022228	4.3424	0.0022354	514.7878121697705	12.794	0.090404	12.794	12.746	12.837	0					4	2	2	0	0	0	0.68432	1	2774	2774		35.618	2.1027	1	383950	+		46998	20385	31181	31306	47594	47594					0.04363698257202486
VRRAGAVRH	9	Unmodified	_VRRAGAVRH_					0	0	0		ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.3104248046875	2	511.309941	1020.60533	-0.1289	-6.591E-05	0.73128	0.00037391	0.60238	0.000308	511.31035825419565	31.014	0.24876	31.014	30.872	31.121	0					20	10	3	0	0	0	0.37197	1	9917	9917		44.117	3.5442	1	330830			46999	8681	31182	31307	47595	47595					0.09585031336848715
VRRETEEVF	9	Unmodified	_VRRETEEVF_					0	0	0		nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	388.871826171875	3	388.871772	1163.59349	0.21607	8.4024E-05	-0.051746	-2.0123E-05	0.16432	6.3901E-05	388.87163254503577	33.176	0.25749	33.176	33.052	33.309	0					16	6	3	0	0	0	0.54267	1	12673	12673		27.882	6.1018	1	585800			47000	5244	31183	31308	47596	47596					0.018233250123330436
VRRIHSPS	8	Unmodified	_VRRIHSPS_					0	0	0		ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2788391113281	2	476.277775	950.540997	2.2773	0.0010846	-0.065929	-3.14E-05	2.2113	0.0010532	476.27764194798215	25.59	0.16937	25.59	25.481	25.65	0					8	3	3	0	0	0	0.66372	1	8994	8994		38.806	38.806	1	451160			47001	3451	31184	31309	47597	47597					0.06374831460050245
VRRLPGGG	8	Unmodified	_VRRLPGGG_					0	0	0		ENST00000497505.5_1_2:203879615-203880929:+|nuORF	ENST00000497505.5_1_2:203879615-203880929:+|nuORF	ENST00000497505.5_1_2:203879615-203880929:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.2481994628906	2	406.248486	810.48242	-0.54049	-0.00021957	0.53364	0.00021679	-0.0068564	-2.7854E-06	406.24860596827295	50.897	0.54941	50.897	50.762	51.312	0					82	34	4	0	0	0	0.79293	1	18243	18243		15.636	0.97212	1	1564100			47002	10127	31185	31310	47598	47598					0.06959774885581282
VRRPVKKK	8	Unmodified	_VRRPVKKK_					0	0	0			REV__nc|ENSG00000151327|Q8N128|FAM177A1	REV__nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	337.57037353515625	3	337.569699	1009.68727	3.0168	0.0010184	-0.32506	-0.00010973	2.6917	0.00090865	337.56956508275937	36.006	0.66502	36.006	35.552	36.217	0					38	13	4	0	0	0	0.78539	1	13870	13870		10.866	0	1	1898300	+		47003	15471	31186	31311	47599	47599					0.18281133695938934
VRSGISGP	8	Unmodified	_VRSGISGP_					0	0	0			REV__ENST00000531040.5_1_11:67183149-67186290:+|nuORF	REV__ENST00000531040.5_1_11:67183149-67186290:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	386.7193908691406	2	386.719227	771.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.308	1	21.308	20.808	21.808	0								0	0	0	1.7419	1	6154	6154		24.203	2.2429	1		+		47004	20056	31187	31312	47600	47600					0.02904673520436063
VRSLLGLSNS	10	Unmodified	_VRSLLGLSNS_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3;STRN3|p.N599Ifs*42|1|0.35|ENSG00000196792|chr14:30906969-30906969|T/-|frameshift_variant;STRN3|p.E617Kfs*24|1|0.23|ENSG00000196792|chr14:30906916-30906916|C/-|frameshift_variant	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.2047119140625	3	349.204862	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.352	1	15.352	14.852	15.852	0								0	0	0	0.4201	1	4027	4027		14.086	2.575	1				47005	7396	31188	31313	47601	47601					0.07224530363282611
VRSSRPAQPTW	11	Unmodified	_VRSSRPAQPTW_					0	0	0		AluSz_dup93694|chr19:16102069-16102357:+|7.731269292554917|0.1659909287906949|5.54|483.0|10|3|sense	AluSz_dup93694|chr19:16102069-16102357:+|7.731269292554917|0.1659909287906949|5.54|483.0|10|3|sense	AluSz_dup93694|chr19:16102069-16102357:+|7.731269292554917|0.1659909287906949|5.54|483.0|10|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	642.8436889648438	2	642.84401	1283.67347	-0.50394	-0.00032396	-1.4383	-0.00092459	-1.9422	-0.0012485	642.8431117574777	29.892	0.16514	29.892	29.784	29.949	0					6	3	2	0	0	0	0.77686	1	11109	11109		19.997	0	1	113630			47006	137	31189	31314	47602	47602					0.04297811406195251
VRSTIVTH	8	Unmodified	_VRSTIVTH_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.7659606933594	2	456.766709	911.518865	0.085394	3.9005E-05	-0.91418	-0.00041757	-0.82879	-0.00037856	456.7662470047106	26.101	0.18309	26.101	25.967	26.15	0					7	4	2	0	0	0	0.65276	1	8327	8327		40.573	1.7665	1	107320	+	+	47007	12612	31190	31315	47603	47603					0.05956606991605895
VRTAGSAPLF	10	Unmodified	_VRTAGSAPLF_					0	0	0			REV__ENST00000268483.7_1_16:72127358-72127508:-|nuORF	REV__ENST00000268483.7_1_16:72127358-72127508:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.7879943847656	2	509.787641	1017.56073	3.0266	0.0015429	-2.6764	-0.0013644	0.35015	0.0001785	509.7860152050272	41.303	0.34325	41.303	41.175	41.518	0					16	8	3	0	0	0	0.41055	1	16408	16408		51.193	18.38	1	170430	+		47008	18088	31191	31316	47604	47604					0.05265162680143476
VRTGLWSAVG	10	Unmodified	_VRTGLWSAVG_					0	0	0		ENST00000156825.5_1_19:1577583-1577715:-|nuORF	ENST00000156825.5_1_19:1577583-1577715:-|nuORF	ENST00000156825.5_1_19:1577583-1577715:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2919921875	2	523.293091	1044.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.34	1	17.34	16.84	17.84	0								0	0	0	0.40862	1	4117	4117		27.882	2.3082	1				47009	8145	31192	31317	47605	47605					0.05112565054423612
VRTHAEIKAF	10	Unmodified	_VRTHAEIKAF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	391.2253112792969	3	391.224257	1170.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.234	1	43.234	42.734	43.734	0								0	0	0	0.4201	1	16932	16932		21.686	0.8486	1				47010	5134;11594	31193	31318	47606	47606					0.07244212008549766
VRTPWVPA	8	Unmodified	_VRTPWVPA_					0	0	0		ENST00000459625.5_1_12:48184825-48185932:-|nuORF;nc|ENSG00000061273|Q8WUI4-2|HDAC7	ENST00000459625.5_1_12:48184825-48185932:-|nuORF	ENST00000459625.5_1_12:48184825-48185932:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.2653503417969	2	463.266345	924.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.658	1	45.658	45.158	46.158	0								0	0	0	1.7419	1	18292	18292		25.45	0	1				47011	9714	31194	31319	47607	47607					0.05285812342560803
VRTVTAFTL	9	Unmodified	_VRTVTAFTL_					0	0	0		ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342712402344	3	336.53432	1006.58113	0.24149	8.127E-05	-0.3718	-0.00012512	-0.13031	-4.3853E-05	336.5341933834859	27.518	1.163	27.518	27.244	28.407	0					62	39	2	0	0	0	0.61124	1	8611	8611		14.137	0	1	131520			47012	7145	31195	31320	47608	47608					0.0781033333993264
VRVPKKMDK	9	Unmodified	_VRVPKKMDK_					0	0	0			REV__ENST00000506762.1_1_5:34950367-34954151:+|nuORF	REV__ENST00000506762.1_1_5:34950367-34954151:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.55767822265625	3	367.558471	1099.65358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.493	1	36.493	35.993	36.993	0								0	0	0	0.32356	1	14217	14217		23.523	0	1		+		47013	16274	31196	31321	47609	47609					0.10774344141873371
VRVPSDPP	8	Unmodified	_VRVPSDPP_					0	0	0			REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant	REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.74017333984375	2	433.74016	865.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.563	1	29.563	29.063	30.063	0								0	0	0	1.7419	1	9343	9343		30.504	3.7075	1		+		47014	17320	31197	31322	47610	47610					0.027652292089555885
VRVVTEPTVY	10	Unmodified	_VRVVTEPTVY_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	581.827392578125	2	581.826963	1161.63937	1.4462	0.00084143	-1.9071	-0.0011096	-0.46091	-0.00026817	581.8262375888536	34.997	0.21883	34.997	34.892	35.111	0					15	6	3	0	0	0	0.47859	1	13526	13526		47.657	3.5405	1	285660	+	+	47015	12620	31198	31323	47611	47611					0.06501970194585738
VRVVTEPTVY	10	Unmodified	_VRVVTEPTVY_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	581.8270874023438	2	581.826963	1161.63937	1.6852	0.00098052	-2.4671	-0.0014354	-0.7819	-0.00045493	581.8260175252293	34.922	0.26649	34.922	34.815	35.081	0					14	5	3	0	0	0	0.46215	1	13445	13445		49.442	1.7842	1	637070	+	+	47016	12620	31198	31323	47612	47612					0.06501970194585738
VRYLPEAQI	9	Unmodified	_VRYLPEAQI_					0	0	0			REV__MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant	REV__MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.8095092773438	2	544.808574	1087.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.55	1	31.55	31.05	32.05	0								0	0	0	0.28666	1	10877	10877		23.042	0	1		+		47017	16159	31199	31324	47613	47613					0.062297183686723656
VRYRTSPQ	8	Unmodified	_VRYRTSPQ_					0	0	0			REV__NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	REV__NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7743225097656	2	503.775065	1005.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.626	1	21.626	21.126	22.126	0								0	0	0	1.7419	1	7070	7070		40.778	1.5253	1		+		47018	15778	31200	31325	47614	47614					0.0330310787757071
VSAADKPTK	9	Unmodified	_VSAADKPTK_					0	0	0			REV__ENSG00000010017|ENST00000011619|RANBP9	REV__ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7581787109375	2	458.758549	915.502546	0.064956	2.9799E-05	-0.36895	-0.00016926	-0.304	-0.00013946	458.7583757378606	21.619	0.18774	21.619	21.506	21.694	0					9	6	2	0	0	0	0.35021	1	5976	5976		45.972	0	1	108390	+		47019	12888	31201	31326	47615	47615					0.041414810348555875
VSAALKEI	8	Unmodified	_VSAALKEI_					0	0	0			REV__ENSG00000088280|ENST00000336689|ASAP3	REV__ENSG00000088280|ENST00000336689|ASAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.7528076171875	2	415.752736	829.490919	0.98903	0.00041119	-1.2158	-0.00050547	-0.22676	-9.4276E-05	415.7521731506478	45.035	0.1655	45.035	44.958	45.123	0					12	9	2	0	0	0	0.63077	1	17467	17467		44.117	0	1	201730	+		47020	13390	31202	31327	47616	47616					0.06935284011501608
VSAASTTSSPV	11	Unmodified	_VSAASTTSSPV_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7695617675781	2	503.756204	1005.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.782	1	25.782	25.282	26.282	0								0	0	0	0.16087	1	8248	8248		67.494	2.0283	1				47021	7755	31203	31328	47617	47617					-0.004674478985748465
VSAFAPLVVFG	11	Unmodified	_VSAFAPLVVFG_					0	0	0			REV__nc|ENSG00000254536|Q6QHF9-4|PAOX	REV__nc|ENSG00000254536|Q6QHF9-4|PAOX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.8140869140625	2	553.815867	1105.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.25	1	20.25	19.75	20.75	0								0	0	0	0.41312	1	5658	5658		34.173	2.6427	1		+		47022	21232	31204	31329	47618	47618					0.06859790516773501
VSAFGPSR	8	Unmodified	_VSAFGPSR_					0	0	0			REV__ENST00000608517.1_1_1:178695276-178695324:-|nuORF	REV__ENST00000608517.1_1_1:178695276-178695324:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	410.718994140625	2	410.719227	819.423902	0.055569	2.2823E-05	-0.49739	-0.00020429	-0.44182	-0.00018147	410.719000675345	32.423	0.29368	32.423	32.289	32.582	0					11	7	2	0	0	0	0.6088	1	12311	12311		47.657	1.7054	1	129060	+		47023	20632	31205	31330	47619	47619					0.006966735204287033
VSAGAESLNTP	11	Unmodified	_VSAGAESLNTP_					0	0	0		ENST00000338972.8_2_5:43557460-43557652:-|nuORF	ENST00000338972.8_2_5:43557460-43557652:-|nuORF	ENST00000338972.8_2_5:43557460-43557652:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.2678833007812	2	523.261653	1044.50875	0.76585	0.00040074	0.21405	0.000112	0.9799	0.00051274	523.2619067213273	24.151	0.25656	24.151	24.052	24.309	0					19	8	3	0	0	0	0.11438	1	7066	7066		68.846	15.757	1	456960			47024	8718	31206	31331	47620	47620					-0.011720455242766548
VSAGEAVVNRV	11	Unmodified	_VSAGEAVVNRV_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.8078002929688	2	550.806562	1099.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.123	1	15.123	14.623	15.623	0								0	0	0	0.45674	1	3838	3838		13.454	1.943	1				47025	7929	31207	31332	47621	47621					0.052756288749378655
VSAGPSSQQL	10	Unmodified	_VSAGPSSQQL_					0	0	0		nc|ENSG00000142230|Q9UBE0-3|SAE1	nc|ENSG00000142230|Q9UBE0-3|SAE1	nc|ENSG00000142230|Q9UBE0-3|SAE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2511291503906	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.749	1	34.749	34.249	35.249	0								0	0	0	0.1345	1	13418	13418		72.879	7.4139	1				47026	11557	31208	31333	47622	47622					0.0002798916684696451
VSAHDEDAR	9	Unmodified	_VSAHDEDAR_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.2286071777344	2	500.228145	998.441737	0.66152	0.00033091	0.4364	0.0002183	1.0979	0.00054921	500.22831889627895	22.731	0.85216	22.731	22.516	23.369	0					50	20	4	0	0	0	0.25109	1	7436	7436		55.504	3.205	1	8511600			47027	1705	31209	31334	47623	47623					-0.05754656015380988
VSALALDGSSS	11	Unmodified	_VSALALDGSSS_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF;WDR90|p.P1013Qfs*98|1|0.36|ENSG00000161996|chr16:659106-659106|C/-|frameshift_variant;WDR90|p.A1071Pfs*40|1|0.36|ENSG00000161996|chr16:660080-660080|G/-|frameshift_variant	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7563781738281	2	503.756204	1005.49785	-0.058071	-2.9254E-05	0.11818	5.9532E-05	0.060105	3.0278E-05	503.7566654081785	25.731	0.10433	25.731	25.64	25.744	0					8	3	3	0	0	0	0.47622	1	7770	7770		45.972	1.5951	1	182160			47028	5434	31210	31335	47624	47624					-0.004674478985521091
VSALTVASSM	10	Unmodified	_VSALTVASSM_					0	0	0			REV__ENST00000392325.8_1_17:80573457-80573544:-|nuORF	REV__ENST00000392325.8_1_17:80573457-80573544:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.2516174316406	2	483.252243	964.489932	-2.9192	-0.0014107	3.3795	0.0016332	0.46034	0.00022246	483.2536796032714	29.688	0.30219	29.688	29.563	29.865	0					12	8	2	0	0	0	0.58896	1	10040	10040		35.618	2.1253	1	122800	+		47029	18822	31211	31336	47625	47625					0.006267015803132381
VSAPHCAPS	9	Unmodified	_VSAPHCAPS_					0	0	0		ENST00000602662.1_3_1:19984160-19984526:+|nuORF	ENST00000602662.1_3_1:19984160-19984526:+|nuORF	ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.7032775878906	2	434.70272	867.390887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.364	1	40.364	39.864	40.864	0								0	0	0	0.27166	1	13052	13052		40.573	1.7665	1				47030	11050	31212	31337	47626	47626					-0.04811276593943603
VSAPHLDVIN	10	Unmodified	_VSAPHLDVIN_					0	0	0			REV__DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	REV__DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7910766601562	2	532.790381	1063.56621	3.4023	0.0018127	-2.2492	-0.0011983	1.1532	0.00061439	532.7892699888462	41.656	0.19838	41.656	41.546	41.745	0					11	5	3	0	0	0	0.30737	1	16580	16580		66.429	4.3219	1	174770	+		47031	12742	31213	31338	47627	47627					0.036968414719467546
VSAPNIAMK	9	Unmodified	_VSAPNIAMK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.7569885253906	2	465.757495	929.500437	-0.13642	-6.3541E-05	-0.046675	-2.1739E-05	-0.1831	-8.528E-05	465.7572779013145	29.341	0.32744	29.341	29.162	29.49	0					16	7	3	0	0	0	0.17854	1	10824	10824		64.207	3.2353	1	581670			47032	3494	31214	31339	47628	47628					0.03286729025398927
VSAPNIAMK	9	Unmodified	_VSAPNIAMK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.75799560546875	2	465.757495	929.500437	-0.17431	-8.1186E-05	0.25054	0.00011669	0.076226	3.5503E-05	465.75770631883614	29.189	0.25957	29.189	28.981	29.24	0					13	7	2	0	0	0	0.26904	1	9751	9751		53.351	53.351	1	72576			47033	3494	31214	31339	47629	47629					0.03286729025398927
VSAPNIAMK	9	Unmodified	_VSAPNIAMK_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.75714111328125	2	465.757495	929.500437	-0.49509	-0.00023059	-0.20702	-9.642E-05	-0.70211	-0.00032701	465.7575364970792	29.281	0.51526	29.281	28.909	29.424	0					20	10	3	0	0	0	0.30951	1	10668	10668		49.442	8.8689	1	1074500			47034	3494	31214	31339	47630	47630					0.03286729025398927
VSAPRHRQK	9	Unmodified	_VSAPRHRQK_					0	0	0			REV__ENSG00000166159|ENST00000299194|LRTM2	REV__ENSG00000166159|ENST00000299194|LRTM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	360.21319580078125	3	360.212463	1077.61556	1.2347	0.00044476	1.126	0.00040558	2.3607	0.00085035	360.21280983709477	21.034	0.1677	21.034	20.926	21.093	0					5	3	2	0	0	0	0.5741	1	6792	6792		24.519	0	1	792420	+		47035	16097	31215	31340	47631	47631					0.0798559427141754
VSAPRVGGK	9	Unmodified	_VSAPRVGGK_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;RPL24|p.R157H|1|0.32|ENSG00000114391|chr3:101681139-101681139|C/T|missense_variant;ENST00000454858.1_1_3:195281775-195281898:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.7613525390625	2	435.761426	869.5083	-0.63681	-0.0002775	0.57461	0.00025039	-0.062208	-2.7108E-05	435.7616458538366	18.059	0.33685	18.059	17.781	18.118	0					10	7	2	0	0	0	0.33044	1	4626	4626		47.657	15.702	1	173460			47036	2846	31216	31341	47632	47632					0.06832624337198467
VSAQAVKQVVP	11	Unmodified	_VSAQAVKQVVP_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.89239501953125	3	375.892396	1124.65536	0.7191	0.0002703	-0.90628	-0.00034066	-0.18718	-7.0358E-05	375.8920369411161	25.004	0.26276	25.004	24.899	25.162	0					11	5	3	0	0	0	0.55968	1	8711	8711		39.873	1.1195	1	1367900			47037	11701	31217	31342	47633	47633					0.09801676431470696
VSAREWPL	8	Unmodified	_VSAREWPL_					0	0	0			REV__ARHGAP20|p.A1161V|1|0.36|ENSG00000137727|chr11:110579464-110579464|G/A|missense_variant	REV__ARHGAP20|p.A1161V|1|0.36|ENSG00000137727|chr11:110579464-110579464|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.26104736328125	2	479.261259	956.507966	0.46028	0.00022059	-1.2789	-0.00061291	-0.81859	-0.00039232	479.2606510354839	31.785	0.25689	31.785	31.654	31.911	0					10	6	2	0	0	0	0.46013	1	11616	11616		64.207	3.2353	1	420540	+		47038	12201	31218	31343	47634	47634					0.027972046173204035
VSARQELKQ	9	Unmodified	_VSARQELKQ_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.8014526367188	2	529.80128	1057.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.96	1	12.96	12.46	13.46	0								0	0	0	0.25587	1	2842	2842		42.864	1.4377	1				47039	6014	31219	31344	47635	47635					0.06151646220496332
VSARRGHIGV	10	Unmodified	_VSARRGHIGV_					0	0	0			REV__ENST00000506216.5_1_4:5858033-5890143:-|nuORF	REV__ENST00000506216.5_1_4:5858033-5890143:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.20965576171875	3	351.20883	1050.60466	1.4501	0.00050929	0.7618	0.00026755	2.2119	0.00077684	351.2091121666787	23.654	0.26744	23.654	23.545	23.813	0					10	5	3	0	0	0	0.73274	1	8192	8192		16.007	0	1	841920	+		47040	19840	31220	31345	47636	47636					0.08138191897137403
VSASGLALSL	10	Unmodified	_VSASGLALSL_					0	0	0			REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF	REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2685546875	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.362	1	33.362	32.862	33.862	0								0	0	0	0.18178	1	11699	11699		66.429	7.6473	1		+		47041	19167	31221	31346	47637	47637					0.06134651694674176
VSASKVISTVK	11	Unmodified	_VSASKVISTVK_					0	0	0		nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.5645751953125	3	373.564168	1117.67067	0.34569	0.00012914	0.5679	0.00021215	0.91359	0.00034128	373.5644342636782	14.976	0.13871	14.976	14.93	15.068	0					6	3	2	0	0	0	0.49446	1	3779	3779		44.639	3.2128	1	314810			47042	11725	31222	31347	47638	47638					0.11654543228655712
VSASLASASL	10	Unmodified	_VSASLASASL_					0	0	0		INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.25006103515625	2	453.250557	904.486562	-0.34138	-0.00015473	0.038915	1.7638E-05	-0.30246	-0.00013709	453.2504266866155	24.856	0.1436	24.856	24.746	24.889	0					7	4	2	0	0	0	0.22198	1	7392	7392		76.774	0	1	88735			47043	7062	31223	31348	47639	47639					0.030497747979552514
VSASSLPSF	9	Unmodified	_VSASSLPSF_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7300109863281	2	447.732	893.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.143	1	13.143	12.643	13.643	0								0	0	0	0.063485	1	3129	3129		82.305	8.3303	1				47044	9808	31224	31349	47640	47640					-0.0015389674780408313
VSASVLNLN	9	Unmodified	_VSASVLNLN_					0	0	0			REV__ENST00000323571.8_1_17:38435382-38435439:+|nuORF	REV__ENST00000323571.8_1_17:38435382-38435439:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.7581481933594	2	458.758549	915.502546	-0.96539	-0.00044288	0.70566	0.00032373	-0.25972	-0.00011915	458.7588698945461	21.631	0.24272	21.631	21.513	21.756	0					10	7	2	0	0	0	0.2873	1	6240	6240		51.335	1.8939	1	89362	+		47045	18340	31225	31350	47641	47641					0.041414810348555875
VSATGTKRGL	10	Unmodified	_VSATGTKRGL_					0	0	0			REV__MED14|p.S625Lfs*16|1|0.05|ENSG00000180182|chrX:40692290-40692291|-/ACAG|frameshift_variant	REV__MED14|p.S625Lfs*16|1|0.05|ENSG00000180182|chrX:40692290-40692291|-/ACAG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2908020019531	2	495.290548	988.566543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.388	1	17.388	16.888	17.888	0								0	0	0	0.30913	1	4324	4324		49.442	1.5259	1		+		47046	16800	31226	31351	47642	47642					0.07180261191797399
VSAVQVVQL	9	Unmodified	_VSAVQVVQL_					0	0	0			REV__nc|ENSG00000170325|Q9NQV6-2|PRDM10	REV__nc|ENSG00000170325|Q9NQV6-2|PRDM10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7843017578125	2	471.784567	941.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.122	1	34.122	33.622	34.622	0								0	0	0	0.10826	1	12682	12682		69.628	4.1622	1		+		47047	21115	31227	31352	47643	47643					0.08146644448629559
VSAWAQVGL	9	Unmodified	_VSAWAQVGL_					0	0	0			REV__ENSG00000178171|ENST00000321420|AMER3	REV__ENSG00000178171|ENST00000321420|AMER3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7572937011719	2	465.75581	929.497067	4.0628	0.0018923	0.074779	3.4829E-05	4.1376	0.0019271	465.75567453362015	29.133	0.14951	29.133	29.023	29.173	0					11	6	2	0	0	0	0.35045	1	9439	9439		45.952	3.4775	1	69859	+		47048	16723	31228	31353	47644	47644					0.029498022430516357
VSCALSLSR	9	Unmodified	_VSCALSLSR_					0	0	0		nc|ENSG00000149380|Q7Z4N8-2|P4HA3;ENST00000525968.1_1_11:73984627-74015361:-|nuORF;ENSG00000149380|ENST00000331597|P4HA3;nc|ENSG00000149380|Q7Z4N8-3|P4HA3	nc|ENSG00000149380|Q7Z4N8-2|P4HA3	nc|ENSG00000149380|Q7Z4N8-2|P4HA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	468.2524108886719	2	468.252577	934.490601	-0.20266	-9.4895E-05	0.23963	0.00011221	0.036971	1.7312E-05	468.2527825395419	28.944	0.22839	28.944	28.85	29.078	0					8	5	2	0	0	0	0.0071053	1	9665	9665		148.99	10.924	1	199880			47049	4879	31229	31354	47645	47645					0.02073541020013181
VSCPVGIKK	9	Unmodified	_VSCPVGIKK_					0	0	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.7756042480469	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.418	1	23.418	22.918	23.918	0								0	0	0	0.30504	1	6776	6776		34.173	1.3601	1				47050	6577	31230	31355	47646	47646					0.06923605922111165
VSCPVGIKK	9	Unmodified	_VSCPVGIKK_					0	0	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7752685546875	2	465.775688	929.536823	-0.67461	-0.00031422	-0.14905	-6.9423E-05	-0.82366	-0.00038364	465.7755617343761	23.775	0.27744	23.775	23.554	23.832	0					19	6	4	0	0	0	0.16002	1	7933	7933		66.429	29.27	1	378350			47051	6577	31230	31355	47647	47647					0.06923605922111165
VSCPVGIKK	9	Unmodified	_VSCPVGIKK_					0	0	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.77532958984375	2	465.775688	929.536823	-1.1541	-0.00053757	0.50305	0.00023431	-0.6511	-0.00030326	465.7758360089011	23.687	0.16689	23.687	23.578	23.745	0					5	3	2	0	0	0	0.48389	1	8210	8210		34.173	8.7224	1	95645			47052	6577	31230	31355	47648	47648					0.06923605922111165
VSCPVGIKK	9	Carbamidomethyl (C)	_VSC(Carbamidomethyl (C))PVGIKK_	VSC(1)PVGIKK		VSC(120)PVGIKK		0	1	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2862548828125	2	494.28642	986.558287	-0.44851	-0.00022169	-0.14293	-7.065E-05	-0.59144	-0.00029234	494.2865356083327	20.059	0.24988	20.059	19.903	20.153	0					12	5	4	0	0	0	0.019882	1	6168	6168		122.18	55.747	1	848180			47053	6577	31230	31356	47649	47649	279				0.06446990950826148
VSCPVGIKK	9	Carbamidomethyl (C)	_VSC(Carbamidomethyl (C))PVGIKK_	VSC(1)PVGIKK		VSC(60)PVGIKK		0	1	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.85986328125	3	329.860039	986.558287	0.38959	0.00012851	-1.0556	-0.00034821	-0.66604	-0.0002197	329.8598078700082	19.936	0.21973	19.936	19.826	20.045	0					9	4	3	0	0	0	0.21263	1	6398	6398		60.118	13.661	1	218600			47054	6577	31230	31356	47650	47650	279				0.06446990950826148
VSCPVGIKK	9	Carbamidomethyl (C)	_VSC(Carbamidomethyl (C))PVGIKK_	VSC(1)PVGIKK		VSC(85)PVGIKK		0	1	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2862243652344	2	494.28642	986.558287	-0.75314	-0.00037227	0.30469	0.0001506	-0.44845	-0.00022166	494.2867149126208	19.953	0.16859	19.953	19.843	20.011	0					8	3	3	0	0	0	0.0792	1	6380	6380		84.916	40.799	1	387800			47055	6577	31230	31356	47651	47651	279				0.06446990950826148
VSCPVGIKK	9	Carbamidomethyl (C)	_VSC(Carbamidomethyl (C))PVGIKK_	VSC(1)PVGIKK		VSC(48)PVGIKK		0	1	0		nc|ENSG00000175806|Q9UJ68-2|MSRA;nc|ENSG00000175806|Q9UJ68-3|MSRA;nc|ENSG00000175806|Q9UJ68-4|MSRA;nc|ENSG00000175806|Q9UJ68-5|MSRA;ENSG00000175806|ENST00000317173|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	nc|ENSG00000175806|Q9UJ68-2|MSRA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	329.8599853515625	3	329.860039	986.558287	0.00078041	2.5743E-07	0.1012	3.3381E-05	0.10198	3.3639E-05	329.86002241292096	19.952	0.22008	19.952	19.791	20.011	0					6	4	2	0	0	0	0.33044	1	6270	6270		47.657	20.964	1	575340			47056	6577	31230	31356	47652	47652	279				0.06446990950826148
VSCRSPGL	8	Unmodified	_VSCRSPGL_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.71295166015625	2	409.713088	817.411622	-0.089286	-3.6581E-05	-0.83952	-0.00034396	-0.92881	-0.00038054	409.7127602338833	20.742	0.24838	20.742	20.644	20.893	0					9	5	2	0	0	0	0.70055	1	5924	5924		33.516	0	1	66849			47057	1533	31231	31357	47653	47653					-0.004386862142609971
VSCSLSRGLQ	10	Unmodified	_VSCSLSRGLQ_					0	0	0		TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant;ENSG00000183735|ENST00000331710|TBK1;TBK1|p.V275D|1|0.11|ENSG00000183735|chr12:64481853-64481853|T/A|missense_variant	TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant	TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2727661132812	2	525.274041	1048.53353	-1.2454	-0.00065415	-1.0169	-0.00053416	-2.2623	-0.0011883	525.2734375738838	27.697	0.13942	27.697	27.604	27.743	0					5	3	2	0	0	0	0.55031	1	9103	9103		28.081	0	1	88022			47058	6980	31232	31358	47654	47654					0.011203110774658853
VSCSVGVLPG	10	Unmodified	_VSCSVGVLPG_					0	0	0		ENST00000258416.7_2_2:233433739-233433853:+|nuORF	ENST00000258416.7_2_2:233433739-233433853:+|nuORF	ENST00000258416.7_2_2:233433739-233433853:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2403564453125	2	459.241678	916.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.383	1	33.383	32.883	33.883	0								0	0	0	0.31878	1	12684	12684		47.916	1.9636	1				47059	8276	31233	31359	47655	47655					0.007227362714729679
VSCVGRKPEK	10	Unmodified	_VSCVGRKPEK_					0	0	0			REV__ENST00000533242.1_1_14:24700862-24701497:-|nuORF	REV__ENST00000533242.1_1_14:24700862-24701497:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.2062683105469	3	368.206098	1101.59646	0.92901	0.00034207	-0.43797	-0.00016126	0.49103	0.0001808	368.20591287537286	34.094	0.3536	34.094	33.94	34.294	0					12	7	2	0	0	0	0.63019	1	13045	13045		30.569	0.25114	1	442410	+		47060	20079	31234	31360	47656	47656					0.04972876865485887
VSCVQMGTR	9	Unmodified	_VSCVQMGTR_					0	0	0			REV__ADAMTS2|p.R938C|1|0.38|ENSG00000087116|chr5:179125119-179125119|G/A|missense_variant	REV__ADAMTS2|p.R938C|1|0.38|ENSG00000087116|chr5:179125119-179125119|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.73748779296875	2	490.736237	979.457921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.791	1	21.791	21.291	22.291	0								0	0	0	0.23445	1	6380	6380		45.972	5.1941	1		+		47061	12074	31235	31361	47657	47657					-0.0326298937447973
VSCVYLQLSK	10	Unmodified	_VSCVYLQLSK_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	380.54327392578125	3	380.542487	1138.60563	0.64445	0.00024524	1.2485	0.00047512	1.893	0.00072036	380.54316946246894	31.113	0.40739	31.113	30.962	31.37	0					23	8	4	0	0	0	0.44601	1	11584	11584		47.228	0	1	2249800	+		47062	13014	31236	31362	47658	47658					0.04187225431155639
VSDANQHVK	9	Unmodified	_VSDANQHVK_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.256591796875	2	499.256705	996.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.278	1	13.278	12.778	13.778	0								0	0	0	0.01286	1	2987	2987		167.23	68.599	1				47063	2370	31237	31363	47659	47659					0.0004681126099512767
VSDANQHVK	9	Unmodified	_VSDANQHVK_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2567443847656	2	499.256705	996.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.296	1	13.296	12.796	13.796	0								0	0	0	0.029874	1	3204	3204		95.815	34.843	1				47064	2370	31237	31363	47660	47660					0.0004681126099512767
VSDANQHVK	9	Unmodified	_VSDANQHVK_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.2568054199219	2	499.256705	996.498858	-2.1729	-0.0010848	1.5456	0.00077164	-0.62727	-0.00031317	499.25750003545477	13.005	0.062551	13.005	12.965	13.028	0					5	3	2	0	0	0	0.28897	1	2583	2583		51.193	8.7966	1	40282			47065	2370	31237	31363	47661	47661					0.0004681126099512767
VSDANQHVK	9	Unmodified	_VSDANQHVK_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2565002441406	2	499.256705	996.498858	2.9172	0.0014564	-3.3213	-0.0016582	-0.40412	-0.00020176	499.2551431631321	13.234	0.42928	13.234	13.127	13.557	0					10	9	2	0	0	0	0.0097668	1	3031	3031		141.52	59.28	1	1317000			47066	2370	31237	31363	47662	47662					0.0004681126099512767
VSDFGPPPS	9	Unmodified	_VSDFGPPPS_					0	0	0			REV__ENST00000486510.1_1_3:51981724-51982493:+|nuORF	REV__ENST00000486510.1_1_3:51981724-51982493:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.7161560058594	2	451.71635	901.418148	-0.40853	-0.00018454	0.011036	4.9852E-06	-0.39749	-0.00017955	451.71633199539434	23.938	0.31802	23.938	23.829	24.147	0					18	6	4	0	0	0	0.16002	1	8198	8198		66.429	18.514	1	3060000	+		47067	12998	31238	31364	47663	47663					-0.03650469781894117
VSDHLNLNH	9	Unmodified	_VSDHLNLNH_					0	0	0		ENST00000280701.7_1_3:25831614-25832591:+|nuORF	ENST00000280701.7_1_3:25831614-25832591:+|nuORF	ENST00000280701.7_1_3:25831614-25832591:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7639770507812	2	524.762155	1047.50976	3.4393	0.0018048	0.23825	0.00012502	3.6776	0.0019298	524.7625239354043	42.663	0.56001	42.663	42.463	43.023	0					53	16	6	0	0	0	0.24095	1	17024	17024		56.721	6.6875	1	2030300			47068	8409	31239	31365	47664	47664					-0.012097863647341
VSDILRQIRQ	10	Unmodified	_VSDILRQIRQ_					0	0	0			REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	614.3621215820312	2	614.362036	1226.70952	0.16586	0.0001019	-0.36969	-0.00022712	-0.20383	-0.00012523	614.3619237499403	20.593	0.1235	20.593	20.512	20.636	0					6	3	2	0	0	0	0.67464	1	5543	5543		14.137	0	1	200630	+		47069	14488	31240	31366	47665	47665					0.10523268583028766
VSDMVRGI	8	Unmodified	_VSDMVRGI_					0	0	0		PLXNA4|p.D428Efs*5|1|0.11|ENSG00000221866|chr7:132489379-132489379|G/-|frameshift_variant;nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4;PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant;PLXNA4|p.T1063Pfs*27|1|0.32|ENSG00000221866|chr7:132182163-132182163|C/-|frameshift_variant;PLXNA4|p.G1175Afs*3|1|0.21|ENSG00000221866|chr7:132180701-132180701|C/-|frameshift_variant;ENSG00000221866|ENST00000321063|PLXNA4	PLXNA4|p.D428Efs*5|1|0.11|ENSG00000221866|chr7:132489379-132489379|G/-|frameshift_variant	PLXNA4|p.D428Efs*5|1|0.11|ENSG00000221866|chr7:132489379-132489379|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.73223876953125	2	438.73402	875.453487	-3.1081	-0.0013636	-1.3284	-0.0005828	-4.4365	-0.0019464	438.7334891394033	26.561	0.32084	26.561	26.413	26.734	0					12	7	2	0	0	0	0.61938	1	8553	8553		45.952	0	1	78760			47070	7847	31241	31367	47666	47666					0.010778694742725747
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.7804565429688	2	582.78021	1163.54587	-0.0028354	-1.6524E-06	0.26143	0.00015235	0.25859	0.0001507	582.7802285470334	21.012	0.3423	21.012	20.833	21.175	0					19	8	4	0	0	0	0.067676	1	6621	6621		97.597	53.48	1	437780			47071	5888	31242	31368	47667	47667					-0.029363739785139842
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.780517578125	2	582.78021	1163.54587	-0.19965	-0.00011635	0.68623	0.00039992	0.48658	0.00028357	582.7806073428496	20.744	0.37471	20.744	20.525	20.899	0					32	12	4	0	0	0	0.061126	1	5815	5815		99.788	50.252	1	500090			47072	5888	31242	31368	47668	47668					-0.029363739785139842
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.7803955078125	2	582.78021	1163.54587	1.3837	0.00080641	-0.88568	-0.00051616	0.49804	0.00029025	582.7796110398466	20.928	0.41648	20.928	20.662	21.078	0					24	8	4	0	0	0	5.7103E-06	1	6845	6845		183.72	96.026	1	2445700			47073	5888	31242	31368	47669	47669					-0.029363739785139842
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.779541015625	2	582.78021	1163.54587	0.56194	0.00032749	-0.19719	-0.00011492	0.36475	0.00021257	582.7798610326306	20.834	0.35299	20.834	20.599	20.952	0					20	8	3	0	0	0	0.0092585	1	5904	5904		125.68	77.723	1	299150			47074	5888	31242	31368	47670	47670					-0.029363739785139842
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.7801513671875	2	582.78021	1163.54587	-1.7083	-0.00099559	2.1138	0.0012319	0.40543	0.00023628	582.7814401857207	20.817	0.31515	20.817	20.629	20.944	0					18	7	3	0	0	0	0.16013	1	5894	5894		79.07	20.288	1	396070			47075	5888	31242	31368	47671	47671					-0.029363739785139842
VSDQVQIK	8	Unmodified	_VSDQVQIK_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.75830078125	2	458.758549	915.502546	0.064864	2.9757E-05	-0.08079	-3.7063E-05	-0.015926	-7.3062E-06	458.7583190603739	23.956	0.22592	23.956	23.849	24.075	0					11	7	2	0	0	0	0.48092	1	7024	7024		62.107	3.3255	1	597290			47076	2537	31243	31369	47672	47672					0.041414810348555875
VSDQVQIK	8	Unmodified	_VSDQVQIK_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.7583923339844	2	458.758549	915.502546	0.87966	0.00040355	-1.2618	-0.00057888	-0.38218	-0.00017533	458.75786733674795	24.171	0.56568	24.171	23.914	24.48	0					18	11	2	0	0	0	0.43813	1	8338	8338		66.429	0	1	3653500			47077	2537	31243	31369	47673	47673					0.041414810348555875
VSDSGAHVL	9	Unmodified	_VSDSGAHVL_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.7270202636719	2	442.727249	883.439946	0.26406	0.0001169	-0.45668	-0.00020219	-0.19263	-8.5281E-05	442.72689057380035	24.737	0.1233	24.737	24.684	24.808	0					5	3	2	0	0	0	0.068692	1	7349	7349		88.643	33.139	1	56164			47078	1343	31244	31370	47674	47674					-0.006436650333284888
VSDSGAHVL	9	Unmodified	_VSDSGAHVL_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7270812988281	2	442.727249	883.439946	0.5776	0.00025572	-0.97842	-0.00043317	-0.40081	-0.00017745	442.726840996759	25.065	0.2676	25.065	24.941	25.209	0					13	6	3	0	0	0	0.036372	1	8508	8508		102.77	51.438	1	548000			47079	1343	31244	31370	47675	47675					-0.006436650333284888
VSDSGAHVL	9	Unmodified	_VSDSGAHVL_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.7268371582031	2	442.727249	883.439946	-1.1389	-0.00050424	0.16987	7.5208E-05	-0.96906	-0.00042903	442.72748346557216	24.774	0.20634	24.774	24.706	24.913	0					9	7	2	0	0	0	0.18605	1	7645	7645		63.306	9.9548	1	84337			47080	1343	31244	31370	47676	47676					-0.006436650333284888
VSDSGAHVL	9	Unmodified	_VSDSGAHVL_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.7268981933594	2	442.727249	883.439946	-0.26565	-0.00011761	-0.29743	-0.00013168	-0.56308	-0.00024929	442.7271013096552	25.016	0.21504	25.016	24.907	25.122	0					7	4	2	0	0	0	0.036372	1	8815	8815		102.77	41.801	1	308060			47081	1343	31244	31370	47677	47677					-0.006436650333284888
VSDSGAHVL	9	Unmodified	_VSDSGAHVL_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.7272644042969	2	442.727249	883.439946	-0.51936	-0.00022993	0.24548	0.00010868	-0.27388	-0.00012126	442.7271996494841	24.855	0.19127	24.855	24.729	24.92	0					7	4	2	0	0	0	0.099922	1	7810	7810		79.451	33.499	1	84078			47082	1343	31244	31370	47678	47678					-0.006436650333284888
VSDSGAHVL	9	Unmodified	_VSDSGAHVL_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7269592285156	2	442.727249	883.439946	-0.50767	-0.00022476	-0.0047935	-2.1222E-06	-0.51246	-0.00022688	442.7272283560958	24.971	0.20753	24.971	24.869	25.076	0					7	4	2	0	0	0	0.023949	1	8697	8697		115.46	44.163	1	553860			47083	1343	31244	31370	47679	47679					-0.006436650333284888
VSDSGAHVL	9	Unmodified	_VSDSGAHVL_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7270202636719	2	442.727249	883.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.978	1	24.978	24.478	25.478	0								0	0	0	0.012934	1	8686	8686		106.42	45.443	1				47084	1343	31244	31370	47680	47680					-0.006436650333284888
VSDTNQHVK	9	Unmodified	_VSDTNQHVK_					0	0	0		ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENST00000534521.5_1_11:111612322-111631898:-|nuORF	ENST00000534521.5_1_11:111612322-111631898:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2626342773438	2	514.261988	1026.50942	0.020906	1.0751E-05	1.1486	0.00059068	1.1695	0.00060143	514.2624512291117	13.224	0.23663	13.224	13.142	13.378	0					12	6	3	0	0	0	0.0059092	1	2967	2967		154.12	71.813	1	1430900			47085	4187	31245	31371	47681	47681					-0.0027720608457002527
VSDTNQHVK	9	Unmodified	_VSDTNQHVK_					0	0	0		ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENST00000534521.5_1_11:111612322-111631898:-|nuORF	ENST00000534521.5_1_11:111612322-111631898:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2615966796875	2	514.261988	1026.50942	-1.6144	-0.00083022	2.525	0.0012985	0.91059	0.00046828	514.2630050277099	12.946	0.05607	12.946	12.914	12.97	0					4	2	2	0	0	0	0.18416	1	2562	2562		63.534	0	1	54863			47086	4187	31245	31371	47682	47682					-0.0027720608457002527
VSDTNQHVK	9	Unmodified	_VSDTNQHVK_					0	0	0		ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENST00000534521.5_1_11:111612322-111631898:-|nuORF	ENST00000534521.5_1_11:111612322-111631898:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.262451171875	2	514.261988	1026.50942	3.1986	0.0016449	-2.408	-0.0012384	0.79054	0.00040654	514.2607788282976	13.185	0.20834	13.185	13.127	13.336	0					7	4	2	0	0	0	0.0059092	1	3010	3010		154.12	63.342	1	1580500			47087	4187	31245	31371	47683	47683					-0.0027720608457002527
VSDVHFIQ	8	Unmodified	_VSDVHFIQ_					0	0	0		ENST00000543005.5_1_12:124118406-124132575:+|nuORF	ENST00000543005.5_1_12:124118406-124132575:+|nuORF	ENST00000543005.5_1_12:124118406-124132575:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7449951171875	2	472.745442	943.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.113	1	34.113	33.613	34.613	0								0	0	0	1.7419	1	11492	11492		38.806	0	1				47088	10555	31246	31372	47684	47684					0.0023321186339444466
VSDYTFDR	8	Unmodified	_VSDYTFDR_					0	0	0			REV__nc|ENSG00000257335|O43451-1|MGAM	REV__nc|ENSG00000257335|O43451-1|MGAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.728759765625	2	501.729989	1001.44543	-0.09199	-4.6154E-05	-2.9238	-0.001467	-3.0158	-0.0015131	501.7286734782374	13.973	0.12969	13.973	13.886	14.016	0					6	3	2	0	0	0	0.72381	1	3309	3309		30.504	0	1	135900	+		47089	17765	31247	31373	47685	47685					-0.055239862415191965
VSEAAADVGL	10	Unmodified	_VSEAAADVGL_					0	0	0		ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENST00000471202.5_1_16:838684-840117:+|nuORF;ENST00000479976.5_1_16:838624-840569:+|nuORF	ENSG00000127586|ENST00000262315|CHTF18	ENSG00000127586|ENST00000262315|CHTF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.23992919921875	2	466.24019	930.465826	-0.90998	-0.00042427	0.32541	0.00015172	-0.58457	-0.00027255	466.24029545686574	18.71	0.27594	18.71	18.559	18.835	0					21	9	3	0	0	0	0.39566	1	4930	4930		56.721	0	1	311240			47090	3514	31248	31374	47686	47686					-0.0021881558170662174
VSEAAADVGL	10	Unmodified	_VSEAAADVGL_					0	0	0		ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENST00000471202.5_1_16:838684-840117:+|nuORF;ENST00000479976.5_1_16:838624-840569:+|nuORF	ENSG00000127586|ENST00000262315|CHTF18	ENSG00000127586|ENST00000262315|CHTF18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.24017333984375	2	466.24019	930.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.868	1	18.868	18.368	19.368	0								0	0	0	0.26105	1	5731	5731		56.721	4.4219	1				47091	3514	31248	31374	47687	47687					-0.0021881558170662174
VSEASPLRM	9	Oxidation (M)	_VSEASPLRM(Oxidation (M))_		VSEASPLRM(1)		VSEASPLRM(46)	0	0	1			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2538146972656	2	503.255317	1004.49608	0.074893	3.7691E-05	-2.5897	-0.0013033	-2.5148	-0.0012656	503.25396441417814	32.143	0.53303	32.143	31.81	32.343	0					27	11	4	0	0	0	0.35021	1	12137	12137		45.972	6.7194	1	400550	+		47092	17087	31249	31375	47688	47688		651			-0.005987801881587984
VSEESSSKVE	10	Unmodified	_VSEESSSKVE_					0	0	0		nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7586669921875	2	540.756401	1079.49825	2.0821	0.0011259	2.7709	0.0014984	4.853	0.0026243	540.7580527994298	12.381	0.13216	12.381	12.325	12.457	0					7	4	2	0	0	0	0.76713	1	2633	2633		9.7057	0.52274	1	57518			47093	11458	31250	31376	47689	47689					-0.03832072969339606
VSEGAHYI	8	Unmodified	_VSEGAHYI_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.21435546875	2	438.216517	874.418482	-3.1022	-0.0013594	-1.1994	-0.0005256	-4.3016	-0.001885	438.21591176141635	20.465	0.17534	20.465	20.383	20.558	0					10	4	3	0	0	0	0.6282	1	5793	5793		44.531	3.9584	1	101640	+		47094	15056	31251	31377	47690	47690					-0.023750500620394632
VSEGGGLQGV	10	Unmodified	_VSEGGGLQGV_					0	0	0		CADPS2|p.I1285V|1|0.27|ENSG00000081803|chr7:122320203-122320203|T/C|missense_variant	CADPS2|p.I1285V|1|0.27|ENSG00000081803|chr7:122320203-122320203|T/C|missense_variant	CADPS2|p.I1285V|1|0.27|ENSG00000081803|chr7:122320203-122320203|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7322998046875	2	451.732532	901.45051	-1.1916	-0.00053828	0.48288	0.00021813	-0.7087	-0.00032014	451.7326261570107	15.351	0.29132	15.351	15.202	15.494	0					13	9	2	0	0	0	0.54197	1	3490	3490		40.778	1.972	1	49406			47095	358	31252	31378	47691	47691					-0.0041568237888895965
VSEGTKAVTK	10	Unmodified	_VSEGTKAVTK_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000273703|ENST00000621112|H2BC14;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000146047|ENST00000274764|H2BC1;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;HIST1H2BD|p.Y122H|1|0.36|ENSG00000158373|chr6:26158533-26158533|T/C|missense_variant;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000197903|ENST00000356950|H2BC12	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.2901306152344	2	510.290214	1018.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.456	1	15.456	14.956	15.956	0								0	0	0	0.2486	1	3366	3366		58.246	10.331	1				47096	5257;7505	31253	31379	47692	47692					0.05733421752097456
VSEKTKLL	8	Unmodified	_VSEKTKLL_					0	0	0		CHAD|p.L142Cfs*42|1|0.29|ENSG00000136457|chr17:50468391-50468391|C/-|frameshift_variant;ENSG00000136457|ENST00000508540|CHAD	CHAD|p.L142Cfs*42|1|0.29|ENSG00000136457|chr17:50468391-50468391|C/-|frameshift_variant	CHAD|p.L142Cfs*42|1|0.29|ENSG00000136457|chr17:50468391-50468391|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2867431640625	2	459.286943	916.559333	-0.44505	-0.0002044	-0.19929	-9.1531E-05	-0.64434	-0.00029594	459.28694331333963	27.821	0.21421	27.821	27.712	27.926	0					9	4	3	0	0	0	0.51384	1	10013	10013		58.782	5.4305	1	535120			47097	502	31254	31380	47693	47693					0.09771528591375045
VSEKTLQTP	9	Unmodified	_VSEKTLQTP_					0	0	0		ENSG00000095203|ENST00000374566|EPB41L4B;EPB41L4B|p.K588N|1|0.32|ENSG00000095203|chr9:109208038-109208038|C/A|missense_variant	ENSG00000095203|ENST00000374566|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.26568603515625	2	501.776939	1001.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.969	1	29.969	29.469	30.469	0								0	0	0	0.22075	1	9504	9504		47.96	0	1				47098	1896	31255	31381	47694	47694					0.038617328607642776
VSEKVGRR	8	Unmodified	_VSEKVGRR_					0	0	0			REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7774353027344	2	465.777608	929.540663	0.6739	0.00031389	-0.51139	-0.00023819	0.16251	7.5694E-05	465.7771462845974	47.342	1.1353	47.342	47.084	48.22	0					77	59	2	0	0	0	0.79882	1	19068	19068		19.36	2.8868	1	135220	+		47099	13018	31256	31382	47695	47695					0.07307411740191583
VSELRMGPR	9	Unmodified	_VSELRMGPR_					0	0	0		ENST00000557080.5_2_12:56325996-56329147:+|nuORF	ENST00000557080.5_2_12:56325996-56329147:+|nuORF	ENST00000557080.5_2_12:56325996-56329147:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7848510742188	2	522.784576	1043.5546	1.6248	0.00084944	-2.6995	-0.0014113	-1.0747	-0.00056183	522.7832906499119	18.838	0.14505	18.838	18.752	18.897	0					5	3	2	0	0	0	0.063823	1	5727	5727		90.37	7.6193	1	923280			47100	10670	31257	31383	47696	47696					0.03456321176963684
VSELTFAY	8	Unmodified	_VSELTFAY_					0	0	0			REV__SLC30A8|p.A64Rfs*22|1|0.57|ENSG00000164756|chr8:117147068-117147068|G/-|frameshift_variant	REV__SLC30A8|p.A64Rfs*22|1|0.57|ENSG00000164756|chr8:117147068-117147068|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2345275878906	2	465.234376	928.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.768	1	37.768	37.268	38.268	0								0	0	0	1.7419	1	14789	14789		28.254	2.8041	1		+		47101	16003	31258	31384	47697	47697					-0.012890126050479012
VSERWTLLT	9	Unmodified	_VSERWTLLT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.8070068359375	2	552.806031	1103.59751	0.05795	3.2035E-05	1.0172	0.00056234	1.0752	0.00059437	552.8065202885186	37.035	0.41123	37.035	36.851	37.262	0					24	12	3	0	0	0	0.27123	1	14433	14433		45.972	5.1941	1	141370			47102	10601	31259	31385	47698	47698					0.04985414506040797
VSESGTFLGLG	11	Unmodified	_VSESGTFLGLG_					0	0	0		ENST00000468045.5_1_2:27354838-27356101:-|nuORF;ENSG00000138073|ENST00000260643|PREB	ENST00000468045.5_1_2:27354838-27356101:-|nuORF	ENST00000468045.5_1_2:27354838-27356101:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7756958007812	2	533.774396	1065.53424	5.0799	0.0027115	0.090293	4.8196E-05	5.1702	0.0027597	533.7742024956765	35.383	0.19612	35.383	35.316	35.512	0					14	9	2	0	0	0	0.56817	1	11964	11964		39.253	2.8061	1	32547			47103	4223	31260	31386	47699	47699					0.004094289981367183
VSEVTQAL	8	Unmodified	_VSEVTQAL_					0	0	0		ENST00000528087.1_1_11:67120378-67120948:-|nuORF	ENST00000528087.1_1_11:67120378-67120948:-|nuORF	ENST00000528087.1_1_11:67120378-67120948:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.731689453125	2	423.732	845.449448	-0.35813	-0.00015175	0.081089	3.436E-05	-0.27704	-0.00011739	423.73182862464824	28.418	0.26345	28.418	28.311	28.574	0					10	5	3	0	0	0	0.30437	1	10307	10307		82.305	0	1	195950			47104	10397	31261	31387	47700	47700					0.02054103252180539
VSFDKLKLT	9	Unmodified	_VSFDKLKLT_					0	0	0		nc|ENSG00000184058|O43435-3|TBX1;ENSG00000184058|ENST00000649276|TBX1;TBX10|p.P319Rfs*20|1|0.14|ENSG00000167800|chr11:67631807-67631807|G/-|frameshift_variant;nc|ENSG00000184058|O43435-2|TBX1;ENSG00000167800|ENST00000335385|TBX10;nc|ENSG00000184058|O43435|TBX1;nc|ENSG00000092607|Q96SF7-2|TBX15;TBX15|p.N507Cfs*20|1|0.07|ENSG00000092607|chr1:118885021-118885022|TT/-|frameshift_variant;TBX15|p.T524Hfs*4|1|0.48|ENSG00000092607|chr1:118884971-118884972|-/G|frameshift_variant;ENSG00000092607|ENST00000369429|TBX15	nc|ENSG00000184058|O43435-3|TBX1	nc|ENSG00000184058|O43435-3|TBX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.8780822753906	3	350.877975	1049.6121	0.32737	0.00011487	-0.61804	-0.00021686	-0.29067	-0.00010199	350.8777673502773	34.506	0.3614	34.506	34.385	34.746	0					21	9	4	0	0	0	0.36135	1	13283	13283		45.022	4.964	1	837320			47105	6997	31262	31388	47701	47701					0.08927486654192762
VSFDKLKLT	9	Unmodified	_VSFDKLKLT_					0	0	0		nc|ENSG00000184058|O43435-3|TBX1;ENSG00000184058|ENST00000649276|TBX1;TBX10|p.P319Rfs*20|1|0.14|ENSG00000167800|chr11:67631807-67631807|G/-|frameshift_variant;nc|ENSG00000184058|O43435-2|TBX1;ENSG00000167800|ENST00000335385|TBX10;nc|ENSG00000184058|O43435|TBX1;nc|ENSG00000092607|Q96SF7-2|TBX15;TBX15|p.N507Cfs*20|1|0.07|ENSG00000092607|chr1:118885021-118885022|TT/-|frameshift_variant;TBX15|p.T524Hfs*4|1|0.48|ENSG00000092607|chr1:118884971-118884972|-/G|frameshift_variant;ENSG00000092607|ENST00000369429|TBX15	nc|ENSG00000184058|O43435-3|TBX1	nc|ENSG00000184058|O43435-3|TBX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.8135986328125	2	525.813325	1049.6121	1.7699	0.00093064	-1.0648	-0.00055989	0.70509	0.00037074	525.8126646921146	34.501	0.43173	34.501	34.373	34.805	0					36	11	5	0	0	0	0.22823	1	13291	13291		60.118	17.722	1	5149400			47106	6997	31262	31388	47702	47702					0.08927486654192762
VSFDRDCKGQV	11	Unmodified	_VSFDRDCKGQV_					0	0	0			REV__ENST00000332995.11_1_6:13289086-13289215:+|nuORF	REV__ENST00000332995.11_1_6:13289086-13289215:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	418.5379333496094	3	418.536283	1252.58702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.656	1	20.656	20.156	21.156	0								0	0	0	0.45674	1	6444	6444		21.78	3.2494	1		+		47107	18395	31263	31389	47703	47703					-0.029169362107040797
VSFFFQVIPI	10	Unmodified	_VSFFFQVIPI_					0	0	0			REV__ENST00000467061.1_1_3:185212393-185212549:-|nuORF	REV__ENST00000467061.1_1_3:185212393-185212549:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	399.56298828125	3	399.561987	1195.66413	3.4642	0.0013841	-0.45059	-0.00018004	3.0136	0.0012041	399.5616288484223	17.97	0.17721	17.97	17.801	17.978	0					7	4	2	0	0	0	0.65051	1	4585	4585		28.081	2.0181	1	61591	+		47108	15930	31264	31390	47704	47704					0.07412650067931281
VSFGESVLK	9	Unmodified	_VSFGESVLK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.267822265625	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.098	1	36.098	35.598	36.598	0								0	0	0	0.32323	1	12224	12224		30.318	2.4355	1				47109	2404	31265	31391	47705	47705					0.03926651694666816
VSFGESVLK	9	Unmodified	_VSFGESVLK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.2687072753906	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.341	1	36.341	35.841	36.841	0								0	0	0	0.023427	1	14145	14145		82.75	0	1				47110	2404	31265	31391	47706	47706					0.03926651694666816
VSFGESVLK	9	Unmodified	_VSFGESVLK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.26861572265625	2	483.26875	964.522947	-0.27288	-0.00013188	-0.11541	-5.5776E-05	-0.3883	-0.00018765	483.2686881999197	36.094	0.13106	36.094	36.036	36.167	0					7	4	2	0	0	0	0.22823	1	12903	12903		60.118	20.865	1	62169			47111	2404	31265	31391	47707	47707					0.03926651694666816
VSFGESVLK	9	Unmodified	_VSFGESVLK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.26837158203125	2	483.26875	964.522947	-0.59925	-0.0002896	-0.10056	-4.86E-05	-0.69981	-0.0003382	483.26866796553986	36.241	0.2629	36.241	36.132	36.395	0					11	5	3	0	0	0	0.052435	1	14075	14075		88.177	40.52	1	390510			47112	2404	31265	31391	47708	47708					0.03926651694666816
VSFGESVLK	9	Unmodified	_VSFGESVLK_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2686462402344	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.296	1	36.296	35.796	36.796	0								0	0	0	0.091378	1	14092	14092		67.494	18.052	1				47113	2404	31265	31391	47709	47709					0.03926651694666816
VSFIHSPPF	9	Unmodified	_VSFIHSPPF_					0	0	0			REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.772216796875	2	515.77146	1029.52837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.443	1	28.443	27.943	28.943	0								0	0	0	0.28996	1	9172	9172		37.159	0.13063	1		+		47114	13784	31266	31392	47710	47710					0.014783752771336367
VSFILSALPA	10	Unmodified	_VSFILSALPA_					0	0	0		GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant;ENSG00000158292|ENST00000377893|GPR153	GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant	GPR153|p.P336Rfs*20|1|0.28|ENSG00000158292|chr1:6250597-6250597|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.8694763183594	3	339.870821	1016.59063	0.37258	0.00012663	-3.5998	-0.0012235	-3.2272	-0.0010968	339.8694098579935	20.599	0.12811	20.599	20.52	20.648	0					5	3	2	0	0	0	0.70274	1	5553	5553		21.686	0.73882	1	56378			47115	5254	31267	31393	47711	47711					0.08300101625457046
VSFKDIGW	8	Unmodified	_VSFKDIGW_					0	0	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2510070800781	2	476.25036	950.486168	-0.62298	-0.00029669	3.0788	0.0014663	2.4558	0.0011696	476.2513789487611	22.344	0.1652	22.344	22.239	22.404	0					6	3	2	0	0	0	0.53424	1	7434	7434		56.721	1.2168	1	225770			47116	3275	31268	31394	47712	47712					0.008943998687414023
VSFKLTFLP	9	Unmodified	_VSFKLTFLP_					0	0	0			REV__ENST00000281830.3_1_2:223920011-223920131:+|nuORF	REV__ENST00000281830.3_1_2:223920011-223920131:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	350.8779602050781	3	351.211066	1050.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.64	1	24.64	24.14	25.14	0								0	0	0	0.31838	1	7714	7714		31.53	4.8369	1		+		47117	18131	31269	31395	47713	47713					0.08808692005118246
VSFLHAQKS	9	Unmodified	_VSFLHAQKS_					0	0	0		ENSG00000183476|ENST00000328828|SH2D7	ENSG00000183476|ENST00000328828|SH2D7	ENSG00000183476|ENST00000328828|SH2D7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.5233459472656	3	339.522303	1015.54508	0.36711	0.00012464	2.6219	0.00089019	2.989	0.0010148	339.5232059092285	18.013	0.16745	18.013	17.904	18.072	0					5	3	2	0	0	0	0.45358	1	5466	5466		36.447	13.867	1	329960			47118	6960	31270	31396	47714	47714					0.03792876163083747
VSFLLTRTS	9	Unmodified	_VSFLLTRTS_					0	0	0			REV__ENST00000511437.5_3_5:10227758-10236627:-|nuORF	REV__ENST00000511437.5_3_5:10227758-10236627:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.296875	2	512.295299	1022.57605	3.1211	0.0015989	0.56199	0.00028791	3.6831	0.0018868	512.2954967077056	44.401	0.20288	44.401	44.304	44.506	0					14	8	2	0	0	0	0.41958	1	17783	17783		32.812	0	1	172310	+		47119	19865	31271	31397	47715	47715					0.06566029477335178
VSFLNVTK	8	Unmodified	_VSFLNVTK_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.26513671875	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.93	1	33.93	33.43	34.43	0								0	0	0	1.7419	1	11070	11070		47.657	3.5405	1				47120	4593	31272	31398	47716	47716					0.06046972902845482
VSFLVGLIML	10	Unmodified	_VSFLVGLIML_					0	0	0		nc|ENSG00000010379|Q9NSD5-2|SLC6A13;ENSG00000010379|ENST00000343164|SLC6A13	nc|ENSG00000010379|Q9NSD5-2|SLC6A13	nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	364.5573425292969	3	364.555956	1090.64604	3.1414	0.0011452	0.6026	0.00021968	3.744	0.0013649	364.55617069016444	26.226	0.31698	26.226	26.117	26.434	0					12	6	2	0	0	0	0.58189	1	9250	9250		36.447	7.2767	1	1344500			47121	1039	31273	31399	47717	47717					0.10434191821605054
VSFMKKGP	8	Unmodified	_VSFMKKGP_					0	0	0			REV__ENST00000521293.5_1_8:74529642-74659041:-|nuORF	REV__ENST00000521293.5_1_8:74529642-74659041:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.25079345703125	2	447.249306	892.484059	3.4429	0.0015398	-0.44995	-0.00020124	2.9929	0.0013386	447.2491192467595	18.386	0.16359	18.386	18.265	18.429	0					11	6	2	0	0	0	0.75243	1	4782	4782		26.796	26.796	1	105950	+		47122	19957	31274	31400	47718	47718					0.033516478593014654
VSFNSKRKR	9	Unmodified	_VSFNSKRKR_					0	0	0			REV__MSANTD4|p.S33Ffs*9|1|0.09|ENSG00000170903|chr11:106010820-106010821|-/A|frameshift_variant	REV__MSANTD4|p.S33Ffs*9|1|0.09|ENSG00000170903|chr11:106010820-106010821|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.3324584960938	2	561.330539	1120.64652	3.4698	0.0019477	0.061372	3.445E-05	3.5312	0.0019822	561.330639611892	36.905	0.25943	36.905	36.795	37.054	0					11	5	3	0	0	0	0.41958	1	14395	14395		40.778	11.629	1	378760	+		47123	16385	31275	31401	47719	47719					0.09102747585643556
VSFPGNVLL	9	Unmodified	_VSFPGNVLL_					0	0	0		ENST00000578926.1_1_7:86811567-86815316:+|nuORF;ENST00000582887.1_1_7:86811523-86815316:+|nuORF	ENST00000578926.1_1_7:86811567-86815316:+|nuORF	ENST00000578926.1_1_7:86811567-86815316:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.27191162109375	2	473.273835	944.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.654	1	21.654	21.154	22.154	0								0	0	0	0.23459	1	6315	6315		45.952	7.1458	1				47124	10857	31276	31402	47720	47720					0.05863259419891165
VSFQETVWA	9	Unmodified	_VSFQETVWA_					0	0	0			REV__AluJr_dup44423|chrX:77901730-77902035:-|1.1282089748604902|0.1951206886456881|2.53|481.0|5|1|sense	REV__AluJr_dup44423|chrX:77901730-77902035:-|1.1282089748604902|0.1951206886456881|2.53|481.0|5|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7635498046875	2	533.763832	1065.51311	1.752	0.00093516	-1.0368	-0.00055339	0.71523	0.00038176	533.7632114199118	39.308	0.21299	39.308	39.25	39.463	0					12	7	2	0	0	0	0.24095	1	15459	15459		56.721	3.3696	1	108540	+		47125	12144	31277	31403	47721	47721					-0.017025363107222802
VSFSAVVFK	9	Unmodified	_VSFSAVVFK_					0	0	0		nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1;ENST00000536936.1_1_20:6088276-6096632:-|nuORF	nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2818298339844	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.931	1	42.931	42.431	43.431	0								0	0	0	0.3119	1	17161	17161		32.812	4.9302	1				47126	2108	31278	31404	47722	47722					0.05679545936948216
VSFSRPLQDV	10	Unmodified	_VSFSRPLQDV_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;OBSCN|p.V2551I|1|0.34|ENSG00000154358|chr1:228280075-228280075|G/A|missense_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	383.2083435058594	3	383.208384	1146.60332	0.60248	0.00023088	-0.62206	-0.00023838	-0.019584	-7.5049E-06	383.2081170843687	22.68	0.46527	22.68	22.572	23.038	0					23	9	4	0	0	0	0.59255	1	7589	7589		35.178	4.1101	1	2461000			47127	11590	31279	31405	47723	47723					0.035885130176893654
VSGAVVAAVI	10	Unmodified	_VSGAVVAAVI_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	443.27362060546875	2	443.273835	884.533118	0.24891	0.00011034	-0.53631	-0.00023773	-0.2874	-0.0001274	443.27359909298673	29.271	0.30115	29.271	29.068	29.369	0					18	11	2	0	0	0	0.30737	1	9186	9186		66.429	18.772	1	129840			47128	7711	31280	31406	47724	47724					0.08623259419891838
VSGDWLLL	8	Unmodified	_VSGDWLLL_					0	0	0		ENST00000519589.1_1_8:133153289-133492518:-|nuORF;KCNQ3|p.Q653Rfs*16|1|0.06|ENSG00000184156|chr8:132129923-132129924|-/C|frameshift_variant;KCNQ3|p.F713Lfs*6|1|0.24|ENSG00000184156|chr8:132129742-132129742|A/-|frameshift_variant;nc|ENSG00000184156|O43525-2|KCNQ3;ENSG00000184156|ENST00000388996|KCNQ3	ENST00000519589.1_1_8:133153289-133492518:-|nuORF	ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.7503967285156	2	451.752736	901.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.249	1	25.249	24.749	25.749	0								0	0	0	1.7419	1	7831	7831		42.474	5.3154	1				47129	7000	31281	31407	47725	47725					0.03623284011530359
VSGEILLH	8	Unmodified	_VSGEILLH_					0	0	0		SYTL5|p.V427Cfs*12|1|0.3|ENSG00000147041|chrX:38106710-38106711|-/T|frameshift_variant;ENSG00000147041|ENST00000297875|SYTL5;nc|ENSG00000147041|Q8TDW5-2|SYTL5	SYTL5|p.V427Cfs*12|1|0.3|ENSG00000147041|chrX:38106710-38106711|-/T|frameshift_variant	SYTL5|p.V427Cfs*12|1|0.3|ENSG00000147041|chrX:38106710-38106711|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2503967285156	2	434.25036	866.486168	-0.44273	-0.00019226	-0.13277	-5.7654E-05	-0.5755	-0.00024991	434.2504160225037	32.299	0.94677	32.299	31.518	32.464	0					37	23	2	0	0	0	0.49887	1	11814	11814		60.294	10.269	1	290770			47130	4761	31282	31408	47726	47726					0.04758399868762808
VSGEKHFLF	9	Unmodified	_VSGEKHFLF_					0	0	0		ENST00000490848.5_1_15:42120322-42128845:+|nuORF;ENSG00000243789|ENST00000397299|JMJD7;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B	ENST00000490848.5_1_15:42120322-42128845:+|nuORF	ENST00000490848.5_1_15:42120322-42128845:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2859497070312	2	532.282192	1062.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.713	1	43.713	43.213	44.213	0								0	0	0	0.27025	1	17502	17502		40.778	21.675	1				47131	7960	31283	31409	47727	47727					0.02105760305835247
VSGEPLLAK	9	Unmodified	_VSGEPLLAK_					0	0	0		ENSG00000204104|ENST00000373327|TRAF3IP1;nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;TRAF3IP1|p.E258Rfs*5|2|0.24|ENSG00000204104|chr2:238329189-238329189|G/-|frameshift_variant	ENSG00000204104|ENST00000373327|TRAF3IP1	ENSG00000204104|ENST00000373327|TRAF3IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.27142333984375	2	457.271293	912.528032	0.76769	0.00035104	-1.1542	-0.0005278	-0.38654	-0.00017675	457.27065637843054	27.865	0.43074	27.865	27.623	28.054	0					21	10	3	0	0	0	0.078509	1	9767	9767		85.161	10.906	1	244470			47132	7672	31284	31410	47728	47728					0.06826955557278325
VSGEPLLAK	9	Unmodified	_VSGEPLLAK_					0	0	0		ENSG00000204104|ENST00000373327|TRAF3IP1;nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;TRAF3IP1|p.E258Rfs*5|2|0.24|ENSG00000204104|chr2:238329189-238329189|G/-|frameshift_variant	ENSG00000204104|ENST00000373327|TRAF3IP1	ENSG00000204104|ENST00000373327|TRAF3IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.27081298828125	2	457.271293	912.528032	-0.14988	-6.8537E-05	-0.46886	-0.0002144	-0.61874	-0.00028293	457.2709843537878	27.812	0.59301	27.812	27.665	28.258	0					24	12	3	0	0	0	0.17854	1	10109	10109		64.207	7.4862	1	266300			47133	7672	31284	31410	47729	47729					0.06826955557278325
VSGEPLLAK	9	Unmodified	_VSGEPLLAK_					0	0	0		ENSG00000204104|ENST00000373327|TRAF3IP1;nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;TRAF3IP1|p.E258Rfs*5|2|0.24|ENSG00000204104|chr2:238329189-238329189|G/-|frameshift_variant	ENSG00000204104|ENST00000373327|TRAF3IP1	ENSG00000204104|ENST00000373327|TRAF3IP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.27166748046875	2	457.271293	912.528032	0.051116	2.3374E-05	0.44893	0.00020528	0.50005	0.00022866	457.2714401459903	27.638	0.18287	27.638	27.505	27.688	0					7	4	2	0	0	0	0.25716	1	9077	9077		54.776	12.38	1	50695			47134	7672	31284	31410	47730	47730					0.06826955557278325
VSGEPLLAK	9	Unmodified	_VSGEPLLAK_					0	0	0		ENSG00000204104|ENST00000373327|TRAF3IP1;nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;TRAF3IP1|p.E258Rfs*5|2|0.24|ENSG00000204104|chr2:238329189-238329189|G/-|frameshift_variant	ENSG00000204104|ENST00000373327|TRAF3IP1	ENSG00000204104|ENST00000373327|TRAF3IP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.2710266113281	2	457.271293	912.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.743	1	27.743	27.243	28.243	0								0	0	0	0.099216	1	9964	9964		71.877	5.4482	1				47135	7672	31284	31410	47731	47731					0.06826955557278325
VSGFTLLVC	9	Unmodified	_VSGFTLLVC_					0	0	0			REV__ENST00000548462.5_1_12:104324233-104336580:+|nuORF	REV__ENST00000548462.5_1_12:104324233-104336580:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.76153564453125	2	469.754421	937.494289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.85	1	17.85	17.35	18.35	0								0	0	0	0.31623	1	5374	5374		31.955	5.1588	1		+		47136	16136	31285	31411	47732	47732					0.023042107938636036
VSGGILGII	9	Unmodified	_VSGGILGII_					0	0	0		tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.762939453125	2	414.763104	827.511654	1.037	0.00043012	-1.5507	-0.00064316	-0.51366	-0.00021305	414.7624578956189	36.069	0.27998	36.069	35.942	36.222	0					15	7	3	0	0	0	0.39123	1	13568	13568		42.474	3.6683	1	103410			47137	22643	31286	31412	47733	47733					0.09099874391188223
VSGGILGII	9	Unmodified	_VSGGILGII_					0	0	0		tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.7636413574219	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.017	1	36.017	35.517	36.517	0								0	0	0	0.10093	1	14000	14000		71.378	11.084	1				47138	22643	31286	31412	47734	47734					0.09099874391188223
VSGGLPVHR	9	Unmodified	_VSGGLPVHR_					0	0	0			REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.265625	2	461.266876	920.519199	-0.8468	-0.0003906	-1.7092	-0.00078839	-2.556	-0.001179	461.2660373888456	25.698	0.1513	25.698	25.62	25.771	0					7	4	2	0	0	0	0.39215	1	8033	8033		42.396	6.7778	1	136860	+		47139	15959	31287	31413	47735	47735					0.0557602671146924
VSGIGDEPVL	10	Unmodified	_VSGIGDEPVL_					0	0	0			REV__ENST00000418047.5_3_22:30681611-30682125:-|nuORF	REV__ENST00000418047.5_3_22:30681611-30682125:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2642517089844	2	493.263665	984.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.511	1	26.511	26.011	27.011	0								0	0	0	0.38797	1	8546	8546		34.173	1.3601	1		+		47140	17672	31288	31414	47736	47736					0.01990043969431099
VSGILDREK	9	Unmodified	_VSGILDREK_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.792236328125	2	508.790381	1015.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.569	1	43.569	43.069	44.069	0								0	0	0	0.13425	1	17030	17030		56.721	0	1				47141	7333	31289	31415	47737	47737					0.05904841471954114
VSGISTGIVA	10	Unmodified	_VSGISTGIVA_					0	0	0		SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant;ENSG00000091138|ENST00000340010|SLC26A3	SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant	SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.2606506347656	2	452.260925	902.507297	-0.41162	-0.00018616	-2.4539	-0.0011098	-2.8656	-0.001296	452.26067652257984	25.907	0.4523	25.907	25.565	26.017	0					14	7	3	0	0	0	0.52707	1	9098	9098		42.396	6.7778	1	335650			47142	1854	31290	31416	47738	47738					0.052143651776077604
VSGIYGYVM	9	Unmodified	_VSGIYGYVM_					0	0	0		SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1;ENST00000467821.1_1_9:113205816-113312285:-|nuORF;nc|ENSG00000165124|Q4LDE5-4|SVEP1	SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.7445373535156	2	494.744053	987.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.696	1	37.696	37.196	38.196	0								0	0	0	0.24438	1	14760	14760		44.531	3.9584	1				47143	5764	31291	31417	47739	47739					-0.020683795857848963
VSGKGAAWGVL	11	Unmodified	_VSGKGAAWGVL_					0	0	0		ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant;ANKRD50|p.G1144Wfs*12|1|0.39|ENSG00000151458|chr4:124669847-124669848|-/A|frameshift_variant;ANKRD50|p.P1235Hfs*8|2|0.36|ENSG00000151458|chr4:124669573-124669573|G/-|frameshift_variant;ENSG00000151458|ENST00000504087|ANKRD50	ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant	ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	348.8659973144531	3	348.86607	1043.57638	0.4987	0.00017398	-0.76008	-0.00026516	-0.26137	-9.1184E-05	348.8657575550068	25.328	0.18915	25.328	25.226	25.415	0					8	4	2	0	0	0	0.75295	1	8649	8649		32.034	10.074	1	402180			47144	161	31292	31418	47740	47740					0.056334491971938405
VSGKRIPV	8	Unmodified	_VSGKRIPV_					0	0	0		ENSG00000124467|ENST00000306511|PSG8	ENSG00000124467|ENST00000306511|PSG8	ENSG00000124467|ENST00000306511|PSG8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.27398681640625	2	428.27417	854.533787	0.84562	0.00036216	-1.2266	-0.00052532	-0.38096	-0.00016316	428.27351792946195	18.765	0.13314	18.765	18.683	18.816	0					5	3	2	0	0	0	0.72381	1	5563	5563		30.504	2.2494	1	217670			47145	3375	31293	31419	47741	47741					0.10070098859614518
VSGKTTQIP	9	Unmodified	_VSGKTTQIP_					0	0	0		DHX16|p.G425V|1|0.08|ENSG00000204560|chr6:30664844-30664844|C/A|missense_variant	DHX16|p.G425V|1|0.08|ENSG00000204560|chr6:30664844-30664844|C/A|missense_variant	DHX16|p.G425V|1|0.08|ENSG00000204560|chr6:30664844-30664844|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.76593017578125	2	465.766374	929.518196	-0.1729	-8.0532E-05	0.48611	0.00022641	0.31321	0.00014588	465.7664868597742	26.661	0.19833	26.661	26.565	26.764	0					6	4	2	0	0	0	0.45358	1	8652	8652		37.159	2.9866	1	77820			47146	781	31294	31420	47742	47742					0.05061767551910634
VSGLGVISPL	10	Unmodified	_VSGLGVISPL_					0	0	0			REV__ENST00000378700.7_2_6:19837725-19837965:+|nuORF	REV__ENST00000378700.7_2_6:19837725-19837965:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.28692626953125	2	471.286943	940.559333	-0.12414	-5.8505E-05	-0.32861	-0.00015487	-0.45275	-0.00021338	471.28677085048673	38.687	1.0639	38.687	38.174	39.237	0					106	37	4	0	0	0	0.54197	1	14988	14988		40.778	2.9666	1	1671900	+		47147	18749	31295	31421	47743	47743					0.0866752859137705
VSGLSVVPV	9	Unmodified	_VSGLSVVPV_					0	0	0		ENST00000487891.1_1_3:49020199-49020700:+|nuORF	ENST00000487891.1_1_3:49020199-49020700:+|nuORF	ENST00000487891.1_1_3:49020199-49020700:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.7600402832031	2	428.760561	855.506569	0.82905	0.00035547	0.24292	0.00010415	1.072	0.00045962	428.7599935140452	39.388	0.51044	39.388	38.981	39.492	0					33	18	3	0	0	0	0.43426	1	14907	14907		38.806	9.6566	1	121210			47148	10040	31296	31422	47744	47744					0.0730357052857471
VSGLSVVPV	9	Unmodified	_VSGLSVVPV_					0	0	0		ENST00000487891.1_1_3:49020199-49020700:+|nuORF	ENST00000487891.1_1_3:49020199-49020700:+|nuORF	ENST00000487891.1_1_3:49020199-49020700:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.7606506347656	2	428.760561	855.506569	0.94753	0.00040626	0.32335	0.00013864	1.2709	0.0005449	428.75996846953785	39.326	0.6264	39.326	38.866	39.492	0					48	21	4	0	0	0	0.14734	2	15365	15365;15517		68.485	20.569	1	377970			47149	10040	31296	31422	47745;47746	47745					0.0730357052857471
VSGLVAAAGGL	11	Unmodified	_VSGLVAAAGGL_					0	0	0			REV__ENSG00000175414|ENST00000310389|ARL10	REV__ENSG00000175414|ENST00000310389|ARL10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7688293457031	2	457.768917	913.523281	-2.6431	-0.0012099	2.0472	0.00093715	-0.59593	-0.0002728	457.7699984811519	28.154	0.22053	28.154	28.02	28.24	0					10	5	2	0	0	0	0.45317	1	9309	9309		47.657	4.7931	1	109860	+		47150	16610	31297	31423	47747	47747					0.06306071414530834
VSGLVTRAL	9	Unmodified	_VSGLVTRAL_					0	0	0		SLC25A19|p.T164Pfs*19|1|0.3|ENSG00000125454|chr17:75278306-75278306|C/-|frameshift_variant;ENSG00000125454|ENST00000416858|SLC25A19;SLC25A19|p.G74Vfs*17|1|0.08|ENSG00000125454|chr17:75286371-75286371|C/-|frameshift_variant;nc|ENSG00000125454|Q9HC21-2|SLC25A19	SLC25A19|p.T164Pfs*19|1|0.3|ENSG00000125454|chr17:75278306-75278306|C/-|frameshift_variant	SLC25A19|p.T164Pfs*19|1|0.3|ENSG00000125454|chr17:75278306-75278306|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.78558349609375	2	458.284734	914.554916	-0.40932	-0.00018758	0.016782	7.6909E-06	-0.39253	-0.00017989	458.28467359114495	24.293	0.069067	24.293	24.24	24.309	0					4	2	2	0	0	0	0.48389	1	7149	7149		34.173	0	1	43792			47151	3416	31298	31424	47748	47748					0.09422064168484212
VSGNTQPIG	9	Unmodified	_VSGNTQPIG_					0	0	0		ENST00000409003.4_2_8:119208327-119208516:-|nuORF	ENST00000409003.4_2_8:119208327-119208516:-|nuORF	ENST00000409003.4_2_8:119208327-119208516:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7268981933594	2	436.727249	871.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.114	1	21.114	20.614	21.614	0								0	0	0	0.3368	1	5763	5763		27.882	0	1				47152	9290	31299	31425	47749	47749					-0.0009166503332380671
VSGPDRKR	8	Unmodified	_VSGPDRKR_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.76165771484375	2	457.761958	913.509363	2.4953	0.0011422	-3.0592	-0.0014004	-0.56392	-0.00025814	457.7605061711548	15.038	0.16817	15.038	14.928	15.096	0					5	3	2	0	0	0	0.51384	1	3889	3889		58.782	0.97068	1	884020	+		47153	13154	31300	31426	47750	47750					0.049148387060995447
VSGPNVAHL	9	Unmodified	_VSGPNVAHL_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	447.2450866699219	2	447.245609	892.476666	-0.29919	-0.00013381	-0.59399	-0.00026566	-0.89318	-0.00039947	447.24515601631697	28.966	0.44749	28.966	28.845	29.292	0					21	16	2	0	0	0	0.47038	1	9106	9106		35.618	12.576	1	90230			47154	1232	31301	31427	47751	47751					0.026126315832243563
VSGPNVAHL	9	Unmodified	_VSGPNVAHL_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2444152832031	2	447.245609	892.476666	-0.42665	-0.00019082	-0.8089	-0.00036178	-1.2355	-0.00055259	447.2452178366661	29.281	0.66084	29.281	29.073	29.734	0					36	16	3	0	0	0	0.37197	1	10431	10431		44.117	3.3386	1	357030			47155	1232	31301	31427	47752	47752					0.026126315832243563
VSGPSGLAGWG	11	Unmodified	_VSGPSGLAGWG_					0	0	0		ENST00000486045.1_1_16:109134-109779:-|nuORF	ENST00000486045.1_1_16:109134-109779:-|nuORF	ENST00000486045.1_1_16:109134-109779:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.24798583984375	2	494.248349	986.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.314	1	29.314	28.814	29.814	0								0	0	0	0.4249	1	10455	10455		31.53	1.0262	1				47156	10014	31302	31428	47753	47753					-0.011636896249569872
VSGPSSARNVA	11	Unmodified	_VSGPSSARNVA_					0	0	0		ENST00000378052.5_1_7:148991082-148992133:+|nuORF;ENST00000480864.1_1_7:148991400-148992133:+|nuORF;ENST00000476295.5_1_7:148991497-148992133:+|nuORF	ENST00000378052.5_1_7:148991082-148992133:+|nuORF	ENST00000378052.5_1_7:148991082-148992133:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.775146484375	2	522.775262	1043.53597	1.6246	0.0008493	-1.7622	-0.00092121	-0.13757	-7.1916E-05	522.7742510235478	17.776	0.16857	17.776	17.666	17.834	0					6	3	2	0	0	0	0.60656	1	5206	5206		36.447	4.9169	1	429860			47157	9060	31303	31429	47754	47754					0.015944828067631533
VSGPTLLAK	9	Unmodified	_VSGPTLLAK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;ENST00000527981.1_1_14:59950407-59951094:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.27374267578125	2	443.273835	884.533118	0.58145	0.00025774	-0.8422	-0.00037333	-0.26076	-0.00011559	443.2734005300594	29.533	0.42154	29.533	29.324	29.745	0					24	10	3	0	0	0	0.28897	1	10527	10527		51.193	14.034	1	757640			47158	3487	31304	31430	47755	47755					0.08623259419891838
VSGPTLLAK	9	Unmodified	_VSGPTLLAK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;ENST00000527981.1_1_14:59950407-59951094:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2732238769531	2	443.273835	884.533118	-0.24704	-0.00010951	-0.044351	-1.966E-05	-0.29139	-0.00012917	443.2737804278874	29.482	0.48863	29.482	29.295	29.784	0					19	10	3	0	0	0	0.21263	1	10889	10889		60.118	3.3972	1	782720			47159	3487	31304	31430	47756	47756					0.08623259419891838
VSGPTLLAK	9	Unmodified	_VSGPTLLAK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;ENST00000527981.1_1_14:59950407-59951094:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.274169921875	2	443.273835	884.533118	0.41526	0.00018407	-0.72342	-0.00032067	-0.30815	-0.0001366	443.2734652977636	29.306	0.25693	29.306	29.148	29.405	0					10	6	2	0	0	0	0.35021	1	9816	9816		45.972	3.5761	1	118850			47160	3487	31304	31430	47757	47757					0.08623259419891838
VSGPTLLAK	9	Unmodified	_VSGPTLLAK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;ENST00000527981.1_1_14:59950407-59951094:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.273681640625	2	443.273835	884.533118	-0.50713	-0.0002248	0.20706	9.1784E-05	-0.30008	-0.00013302	443.2739728148069	29.316	0.21963	29.316	29.17	29.39	0					8	5	2	0	0	0	0.46194	1	9834	9834		36.447	5.9431	1	85600			47161	3487	31304	31430	47758	47758					0.08623259419891838
VSGPTLLAK	9	Unmodified	_VSGPTLLAK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;ENST00000527981.1_1_14:59950407-59951094:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.27337646484375	2	443.273835	884.533118	-0.49638	-0.00022003	0.18494	8.1981E-05	-0.31143	-0.00013805	443.27389897417515	29.49	0.70587	29.49	28.959	29.664	0					26	14	3	0	0	0	0.1424	1	10761	10761		69.628	10.846	1	639740			47162	3487	31304	31430	47759	47759					0.08623259419891838
VSGQPKWDL	9	Unmodified	_VSGQPKWDL_					0	0	0			REV__ENSG00000165105|ENST00000376447|RASEF	REV__ENSG00000165105|ENST00000376447|RASEF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2744750976562	2	515.271824	1028.5291	3.2371	0.001668	1.4767	0.00076091	4.7138	0.0024289	515.2725124625889	44.049	0.1851	44.049	44.002	44.188	0					14	8	2	0	0	0	0.51757	1	17655	17655		30.318	0	1	106190	+		47163	16021	31305	31431	47760	47760					0.015971699261854155
VSGQSLGLVY	10	Unmodified	_VSGQSLGLVY_					0	0	0			REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant;REV__CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2814331054688	2	511.779482	1021.54441	0.88155	0.00045116	-1.2835	-0.00065688	-0.40197	-0.00020572	512.2801740183013	34.605	0.13095	34.605	34.542	34.673	0					5	3	2	0	0	0	0.52275	1	12266	12266		42.864	3.6114	1	34923	+		47164	12653;12652	31306	31432	47761	47761					0.034500367233818
VSGQVWRR	8	Unmodified	_VSGQVWRR_					0	0	0			REV__ENST00000265801.6_2_8:20106968-20107088:-|nuORF	REV__ENST00000265801.6_2_8:20106968-20107088:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2765197753906	2	494.277775	986.540997	-2.5053	-0.0012383	0.70968	0.00035078	-1.7957	-0.00088755	494.27789795707866	21.742	0.25601	21.742	21.598	21.854	0					13	6	3	0	0	0	0.53424	1	6354	6354		56.721	56.721	1	267490	+		47165	18079	31307	31433	47762	47762					0.04718831460036199
VSGRSAWPLA	10	Unmodified	_VSGRSAWPLA_					0	0	0			REV__QPCT|p.V29Sfs*20|1|0.34|ENSG00000115828|chr2:37344811-37344811|G/-|frameshift_variant	REV__QPCT|p.V29Sfs*20|1|0.34|ENSG00000115828|chr2:37344811-37344811|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	348.5259704589844	3	348.525936	1042.55598	0.51326	0.00017888	-0.53713	-0.0001872	-0.023868	-8.3187E-06	348.525791117766	25.18	0.16655	25.18	25.073	25.239	0					7	3	3	0	0	0	0.66185	1	8915	8915		25.126	0	1	359540	+		47166	21434	31308	31434	47763	47763					0.03640278537386621
VSGSGPDKL	9	Unmodified	_VSGSGPDKL_					0	0	0			REV__MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant	REV__MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.22943115234375	2	430.229625	858.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.056	1	29.056	28.556	29.556	0								0	0	0	0.19749	1	10717	10717		51.335	0	1		+		47167	20875	31309	31435	47764	47764					0.009812191094397349
VSGSLGKKVP	10	Unmodified	_VSGSLGKKVP_					0	0	0			REV__tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	REV__tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.298583984375	2	486.297842	970.581131	0.64368	0.00031302	0.14388	6.997E-05	0.78756	0.00038299	486.2978644942028	21.699	0.21753	21.699	21.558	21.776	0					9	4	3	0	0	0	0.48965	1	7255	7255		46.457	22.254	1	435720	+		47168	22165	31310	31436	47765	47765					0.09466333339946686
VSGSLQGGLL	10	Unmodified	_VSGSLQGGLL_					0	0	0		ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.76617431640625	2	465.766374	929.518196	-0.13644	-6.3548E-05	-0.61913	-0.00028837	-0.75557	-0.00035192	465.76609484740766	21.981	0.36212	21.981	21.825	22.187	0					18	7	4	0	0	0	0.2538	1	7357	7357		72.879	6.45	1	3572800			47169	9877	31311	31437	47766	47766					0.05061767551910634
VSGSLQGGLL	10	Unmodified	_VSGSLQGGLL_					0	0	0		ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7662658691406	2	465.766374	929.518196	-0.49508	-0.00023059	-0.072369	-3.3707E-05	-0.56745	-0.0002643	465.7663276251118	21.995	0.4143	21.995	21.84	22.254	0					19	8	4	0	0	0	0.15878	1	7234	7234		85.161	2.9203	1	3846800			47170	9877	31311	31437	47767	47767					0.05061767551910634
VSGSLQGGLL	10	Unmodified	_VSGSLQGGLL_					0	0	0		ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7660827636719	2	465.766374	929.518196	0.67229	0.00031313	-1.3703	-0.00063822	-0.69798	-0.00032509	465.76580991537264	21.979	0.36744	21.979	21.871	22.239	0					15	7	3	0	0	0	0.15878	1	7251	7251		85.161	5.4482	1	3718000			47171	9877	31311	31437	47768	47768					0.05061767551910634
VSGSSTKW	8	Unmodified	_VSGSSTKW_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	426.5494689941406	2	426.216517	850.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.22	1	26.22	25.72	26.72	0								0	0	0	1.7419	1	9358	9358		25.45	1.2474	1				47172	2625	31312	31438	47769	47769					-0.012710500620528364
VSGTVARLAK	10	Unmodified	_VSGTVARLAK_					0	0	0		ENSG00000188996|ENST00000380907|HUS1B	ENSG00000188996|ENST00000380907|HUS1B	ENSG00000188996|ENST00000380907|HUS1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.54180908203125	3	334.541586	1000.60293	0.5192	0.0001737	0.058876	1.9697E-05	0.57808	0.00019339	334.5416671432427	14.575	0.21008	14.575	14.445	14.655	0					9	5	2	0	0	0	0.48965	1	3604	3604		46.457	2.806	1	455270			47173	7290	31313	31439	47770	47770					0.10265138088516323
VSGTVRHW	8	Unmodified	_VSGTVRHW_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2506103515625	2	471.251226	940.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.908	1	21.908	21.408	22.408	0								0	0	0	1.7419	1	6110	6110		30.504	1.3541	1		+		47174	14500	31314	31440	47771	47771					0.01527453677374524
VSGYFCKCD	9	Unmodified	_VSGYFCKCD_					0	0	0		CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant;CUBN|p.N1904Tfs*7|1|0.22|ENSG00000107611|chr10:16938985-16938985|T/-|frameshift_variant;CUBN|p.R520Pfs*17|1|0.17|ENSG00000107611|chr10:17100213-17100214|-/A|frameshift_variant;CUBN|p.P833Lfs*67|2|0.31|ENSG00000107611|chr10:17071555-17071555|A/-|frameshift_variant;CUBN|p.F831Nfs*73|1|0.24|ENSG00000107611|chr10:17071561-17071562|-/TCTTTGAATTT|frameshift_variant;CUBN|p.L906Ffs*6|1|0.32|ENSG00000107611|chr10:17068681-17068681|A/-|frameshift_variant;CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.20989990234375	2	511.209521	1020.40449	-1.7602	-0.00089986	1.5655	0.00080029	-0.19477	-9.957E-05	511.7117082638175	40.632	0.16819	40.632	40.552	40.72	0					15	9	2	0	0	0	0.37197	1	14412	14412		44.117	0	1	101900			47175	715	31315	31441	47772	47772					-0.104897868770081
VSGYKHAGTY	10	Unmodified	_VSGYKHAGTY_					0	0	0		ENSG00000171368|ENST00000360578|TPPP	ENSG00000171368|ENST00000360578|TPPP	ENSG00000171368|ENST00000360578|TPPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7677001953125	2	541.766906	1081.51926	0.15777	8.5476E-05	-2.6516	-0.0014366	-2.4939	-0.0013511	542.2656118502325	34.219	0.20004	34.219	34.118	34.318	0					13	9	2	0	0	0	0.65051	1	11551	11551		28.081	2.5074	1	178560			47176	6293	31316	31442	47773	47773					-0.01824018079173584
VSGYLLCA	8	Unmodified	_VSGYLLCA_					0	0	0			REV__tr|U7T0W6|U7T0W6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00716PE=4SV=1	REV__tr|U7T0W6|U7T0W6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00716PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	413.2115478515625	2	413.212389	824.410226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.003	1	29.003	28.503	29.503	0								0	0	0	1.7419	1	9703	9703		33.516	6.7195	1		+		47177	22068	31317	31443	47774	47774					-0.009003203030147233
VSHEAPLRS	9	Unmodified	_VSHEAPLRS_					0	0	0			REV__ENST00000424634.5_3_22:45559940-45562210:+|nuORF	REV__ENST00000424634.5_3_22:45559940-45562210:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	332.5138854980469	3	332.513807	994.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.817	1	18.817	18.317	19.317	0								0	0	0	0.24724	1	5572	5572		42.864	5.0528	1		+		47178	18487	31318	31444	47775	47775					0.02211401640670374
VSHLARLE	8	Unmodified	_VSHLARLE_					0	0	0			REV__nc|ENSG00000095261|Q16401-2|PSMD5	REV__nc|ENSG00000095261|Q16401-2|PSMD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7668151855469	2	462.766709	923.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.041	1	19.041	18.541	19.541	0								0	0	0	1.7419	1	5676	5676		63.306	7.8021	1		+		47179	13467	31319	31445	47776	47776					0.0540460699162395
VSHLIEKLP	9	Unmodified	_VSHLIEKLP_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.87811279296875	3	345.878087	1034.61243	0.50298	0.00017397	-0.37922	-0.00013116	0.12377	4.2808E-05	345.87782749222333	16.104	0.27069	16.104	15.966	16.236	0					10	6	3	0	0	0	0.53083	1	4305	4305		29.17	6.5904	1	394960			47180	7011	31320	31446	47777	47777					0.09650906374031365
VSHLRGSNR	9	Unmodified	_VSHLRGSNR_					0	0	0		PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.284912109375	2	513.283589	1024.55262	3.1664	0.0016253	-0.13003	-6.6741E-05	3.0364	0.0015585	513.2835056262422	30.021	0.26928	30.021	29.862	30.131	0					13	5	4	0	0	0	0.44593	1	11056	11056		37.812	2.6108	1	644240			47181	3502	31321	31447	47778	47778					0.04133028483374801
VSHQLRAFI	9	Unmodified	_VSHQLRAFI_					0	0	0		ENST00000514042.1_1_5:79368411-79378328:-|nuORF	ENST00000514042.1_1_5:79368411-79378328:-|nuORF	ENST00000514042.1_1_5:79368411-79378328:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	357.5416259765625	3	357.541697	1069.60326	-0.060405	-2.1597E-05	-0.16607	-5.9377E-05	-0.22648	-8.0974E-05	357.541608990242	23.235	0.36211	23.235	22.939	23.301	0					19	7	3	0	0	0	0.50461	1	7819	7819		39.253	7.298	1	267660			47182	10250	31322	31448	47779	47779					0.07124557808378995
VSHRPFMR	8	Unmodified	_VSHRPFMR_					0	0	0			REV__ENST00000577066.2_1_17:79006438-79006606:-|nuORF	REV__ENST00000577066.2_1_17:79006438-79006606:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2747192382812	2	515.274178	1028.5338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.138	1	44.138	43.638	44.638	0								0	0	0	1.7419	1	17212	17212		30.504	0.6621	1		+		47183	20421	31323	31449	47780	47780					0.020677755879660253
VSHRTWPI	8	Unmodified	_VSHRTWPI_					0	0	0		ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.275390625	2	498.274701	994.534849	0.17539	8.7392E-05	-1.4495	-0.00072226	-1.2741	-0.00063487	498.2738957415162	34.494	0.1021	34.494	34.44	34.542	0					6	3	2	0	0	0	0.51384	1	12205	12205		58.782	10.822	1	176650			47184	9789	31324	31450	47781	47781					0.037363132285236134
VSHVCSPSF	9	Carbamidomethyl (C)	_VSHVC(Carbamidomethyl (C))SPSF_	VSHVC(1)SPSF		VSHVC(91)SPSF		0	1	0		AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|2|1|sense	AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|2|1|sense	AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|2|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2343444824219	2	510.234384	1018.45422	1.1954	0.00060993	-1.1481	-0.00058581	0.047274	2.4121E-05	510.2340155238656	32.707	0.98882	32.707	32.321	33.309	0					64	24	5	0	0	0	0.062676	1	12434	12434		90.777	11.064	1	7170700			47185	126	31325	31451	47782	47782	7				-0.05427335876674988
VSIATPKQK	9	Unmodified	_VSIATPKQK_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.5341796875	3	324.53432	970.581131	0.38964	0.00012645	-0.45903	-0.00014897	-0.069395	-2.2521E-05	324.534119115268	15.765	0.26486	15.765	15.584	15.849	0					12	5	4	0	0	0	0.50461	1	4377	4377		47.657	8.4045	1	306380			47186	6167	31326	31452	47783	47783					0.09466333339935318
VSICMILLV	9	Unmodified	_VSICMILLV_					0	0	0			REV__nc|ENSG00000173585|P51686-2|CCR9	REV__nc|ENSG00000173585|P51686-2|CCR9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7901916503906	2	495.789949	989.565346	0.72447	0.00035918	-0.4913	-0.00024358	0.23317	0.0001156	495.7897125037407	42.495	0.41305	42.495	42.381	42.794	0					46	20	3	0	0	0	0.41354	1	16655	16655		40.573	40.573	1	779380	+		47187	16520	31327	31453	47784	47784					0.0701458750703523
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.28240966796875	2	509.282389	1016.55022	0.93283	0.00047507	-1.0439	-0.00053166	-0.11112	-5.659E-05	509.2818157639004	25.877	0.30886	25.877	25.744	26.053	0					13	5	4	0	0	0	8.1205E-06	1	8865	8865		180.09	89.49	1	6073400			47188	6636	31328	31454	47785	47785					0.04261135235049096
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.28369140625	2	509.282389	1016.55022	3.9225	0.0019977	-2.4036	-0.0012241	1.5189	0.00077356	509.2810617507393	25.634	0.14364	25.634	25.568	25.712	0					10	4	3	0	0	0	6.9163E-05	1	7990	7990		150.81	57.667	1	336920			47189	6636	31328	31454	47786	47786					0.04261135235049096
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.2822570800781	2	509.282389	1016.55022	-0.51117	-0.00026033	0.543	0.00027654	0.031828	1.6209E-05	509.28265013595404	25.625	0.26028	25.625	25.474	25.734	0					17	8	3	0	0	0	3.3692E-05	1	7983	7983		167.93	69.351	1	741640			47190	6636	31328	31454	47787	47787					0.04261135235049096
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2823791503906	2	509.282389	1016.55022	0.61943	0.00031546	-0.451	-0.00022969	0.16843	8.5777E-05	509.2822715938837	25.662	0.26869	25.662	25.581	25.85	0					10	5	3	0	0	0	3.3692E-05	1	8200	8200		167.93	87.479	1	430050			47191	6636	31328	31454	47788	47788					0.04261135235049096
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2831726074219	2	509.282389	1016.55022	0.19756	0.00010062	-0.19197	-9.7767E-05	0.0055935	2.8487E-06	509.28222062674655	25.695	0.18071	25.695	25.608	25.789	0					11	4	3	0	0	0	3.5628E-08	1	8193	8193		196.52	84.107	1	1299200			47192	6636	31328	31454	47789	47789					0.04261135235049096
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.2823486328125	2	509.282389	1016.55022	-1.8575	-0.00094597	1.9326	0.00098423	0.075123	3.8259E-05	509.28315528503765	25.678	0.21703	25.678	25.561	25.778	0					8	5	2	0	0	0	0.3077	1	8212	8212		61.765	13.805	1	172130			47193	6636	31328	31454	47790	47790					0.04261135235049096
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.2821044921875	2	509.282389	1016.55022	-0.046839	-2.3854E-05	-0.58639	-0.00029864	-0.63322	-0.00032249	509.2820333738497	25.857	0.24819	25.857	25.718	25.966	0					5	3	2	0	0	0	6.3833E-05	1	9074	9074		154.01	82.134	1	1501800			47194	6636	31328	31454	47791	47791					0.04261135235049096
VSIEAGSAVGK	11	Unmodified	_VSIEAGSAVGK_					0	0	0		ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENSG00000176945|ENST00000447234|MUC20	ENSG00000176945|ENST00000447234|MUC20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.28216552734375	2	509.282389	1016.55022	1.3422	0.00068358	-1.8557	-0.00094509	-0.51349	-0.00026151	509.2814372104114	25.84	0.95127	25.84	25.347	26.298	0					24	17	3	0	0	0	5.7103E-06	1	9064	9064		183.72	77.039	1	3515800			47195	6636	31328	31454	47792	47792					0.04261135235049096
VSIEELPR	8	Unmodified	_VSIEELPR_					0	0	0		ENST00000279488.7_1_12:89746238-89746319:-|nuORF	ENST00000279488.7_1_12:89746238-89746319:-|nuORF	ENST00000279488.7_1_12:89746238-89746319:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.7660217285156	2	471.766374	941.518196	-0.56396	-0.00026606	-0.0012658	-5.9714E-07	-0.56522	-0.00026665	471.76635026972076	24.038	0.3454	24.038	23.844	24.189	0					19	8	3	0	0	0	0.46905	1	7378	7378		63.306	1.615	1	944980			47196	8406	31329	31455	47793	47793					0.045097675518945834
VSIEKRLE	8	Unmodified	_VSIEKRLE_					0	0	0			REV__CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	REV__CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2877502441406	2	487.287474	972.560395	-0.05665	-2.7605E-05	0.050724	2.4717E-05	-0.005926	-2.8877E-06	487.28767393287	26.574	0.12574	26.574	26.508	26.634	0					6	4	2	0	0	0	0.53424	1	8098	8098		56.721	7.185	1	66329	+		47197	12313	31330	31456	47794	47794					0.07301742960282809
VSIENPRLLLS	11	Unmodified	_VSIENPRLLLS_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.2467956542969	3	414.246839	1239.71869	-0.16267	-6.7388E-05	-0.047824	-1.9811E-05	-0.2105	-8.7198E-05	414.2467836710668	27.177	0.32396	27.177	27.001	27.325	0					24	12	3	0	0	0	0.61747	1	8318	8318		35.496	0.31743	1	397590	+		47198	18767	31331	31457	47795	47795					0.1084161714873062
VSIFINNT	8	Unmodified	_VSIFINNT_					0	0	0		IGSF11|p.S339Lfs*36|1|0.06|ENSG00000144847|chr3:118902801-118902802|-/AG|frameshift_variant;nc|ENSG00000144847|Q5DX21-2|IGSF11;ENSG00000144847|ENST00000393775|IGSF11;ENST00000459718.1_1_3:118644864-118649075:-|nuORF;nc|ENSG00000144847|Q5DX21-3|IGSF11	IGSF11|p.S339Lfs*36|1|0.06|ENSG00000144847|chr3:118902801-118902802|-/AG|frameshift_variant	IGSF11|p.S339Lfs*36|1|0.06|ENSG00000144847|chr3:118902801-118902802|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	454.24530029296875	2	454.247818	906.481082	0.24451	0.00011107	-1.541	-0.0007	-1.2965	-0.00058893	454.2468042933541	24.147	0.60583	24.147	23.685	24.29	0					27	14	3	0	0	0	0.64144	1	7341	7341		42.396	6.7778	1	391550			47199	4646	31332	31458	47796	47796					0.024100960061332444
VSIGAFGQV	9	Unmodified	_VSIGAFGQV_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.2440490722656	2	439.242535	876.470518	2.6515	0.0011646	0.76754	0.00033714	3.419	0.0015018	439.2428849684191	28.135	0.21861	28.135	28.026	28.245	0					7	4	2	0	0	0	0.071197	1	10169	10169		87.754	19.27	1	1075400			47200	5667	31333	31459	47797	47797					0.027341133517211347
VSIGDPKKK	9	Unmodified	_VSIGDPKKK_					0	0	0		PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.297607421875	2	486.297842	970.581131	-0.85461	-0.00041559	0.11793	5.7348E-05	-0.73668	-0.00035824	486.29796914506795	15.557	0.16032	15.557	15.443	15.604	0					10	5	2	0	0	0	0.30841	1	3542	3542		49.536	5.1589	1	144150			47201	6802	31334	31460	47798	47798					0.09466333339946686
VSIGDPKKK	9	Unmodified	_VSIGDPKKK_					0	0	0		PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.29779052734375	2	486.297842	970.581131	-0.68896	-0.00033504	0.59166	0.00028772	-0.097304	-4.7319E-05	486.2979336779464	15.805	0.31279	15.805	15.6	15.913	0					18	6	5	0	0	0	0.026538	1	4383	4383		112.41	27.25	1	964370			47202	6802	31334	31460	47799	47799					0.09466333339946686
VSIHPLSAY	9	Unmodified	_VSIHPLSAY_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7685852050781	2	493.768917	985.523281	-1.2684	-0.00062627	-0.33799	-0.00016689	-1.6063	-0.00079316	493.7693422883075	33.548	0.32087	33.548	33.434	33.755	0					28	12	4	0	0	0	0.26904	1	11254	11254		53.351	7.3995	1	418750	+		47203	14103	31335	31461	47800	47800					0.029940714145027414
VSIHQRSEG	9	Unmodified	_VSIHQRSEG_					0	0	0			REV__ENSG00000112320|ENST00000317357|SOBP	REV__ENSG00000112320|ENST00000317357|SOBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.17706298828125	3	338.177195	1011.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.075	1	14.075	13.575	14.575	0								0	0	0	0.23445	1	2988	2988		45.972	3.5761	1		+		47204	14001	31336	31462	47801	47801					0.004462136352913149
VSIIKVGDKQL	11	Unmodified	_VSIIKVGDKQL_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	400.5834045410156	3	400.583451	1198.72852	-1.3247	-0.00053066	0.70341	0.00028178	-0.62131	-0.00024889	400.58372189862774	23.387	0.2817	23.387	23.211	23.493	0					14	9	2	0	0	0	0.69004	1	7021	7021		28.577	4.3449	1	79007	+		47205	16476	31337	31463	47802	47802					0.13710805154096306
VSINKLNNI	9	Unmodified	_VSINKLNNI_					0	0	0			REV__tr|U7T059|U7T059_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	REV__tr|U7T059|U7T059_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8008117675781	2	507.800749	1013.58694	-1.9089	-0.00096936	1.847	0.00093791	-0.061946	-3.1456E-05	507.8017137489244	36.919	0.23471	36.919	36.86	37.095	0					10	9	2	0	0	0	0.37197	1	13221	13221		44.117	1.2525	1	59508	+		47206	22051	31338	31464	47803	47803					0.08069431851606623
VSIQSKVLK	9	Unmodified	_VSIQSKVLK_					0	0	0			REV__ENST00000583108.5_1_17:65735015-65739972:+|nuORF	REV__ENST00000583108.5_1_17:65735015-65739972:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.3211364746094	2	501.321317	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.238	1	30.238	29.738	30.738	0								0	0	0	0.13137	1	11282	11282		64.207	2.0999	1		+		47207	14604	31339	31465	47804	47804					0.12779192891082403
VSISEKCIIW	10	Unmodified	_VSISEKCIIW_					0	0	0			REV__ENSG00000133742|ENST00000523022|CA1	REV__ENSG00000133742|ENST00000523022|CA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	393.2158203125	3	393.21437	1176.62128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.762	1	17.762	17.262	18.262	0								0	0	0	0.38879	1	4517	4517		33.922	2.3918	1		+		47208	14719	31340	31466	47805	47805					0.0400351194821269
VSITEVFF	8	Unmodified	_VSITEVFF_					0	0	0			REV__NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant	REV__NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.25054931640625	2	471.252569	940.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.156	1	22.156	21.656	22.656	0								0	0	0	1.7419	1	7457	7457		42.474	5.3154	1		+		47209	13963	31341	31467	47806	47806					0.017958642916596546
VSIYVAKNYGE	11	Unmodified	_VSIYVAKNYGE_					0	0	0			REV__ENSG00000102390|ENST00000373358|PBDC1	REV__ENSG00000102390|ENST00000373358|PBDC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	621.8230590820312	2	621.821878	1241.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.954	1	19.954	19.454	20.454	0								0	0	0	0.4462	1	5495	5495		12.207	0	1		+		47210	13634	31342	31468	47807	47807					0.018053624693038728
VSKAPRFMLG	10	Oxidation (M)	_VSKAPRFM(Oxidation (M))LG_		VSKAPRFM(1)LG		VSKAPRFM(40)LG	0	0	1			REV__ENST00000280663.12_1_12:1902823-1909126:-|nuORF	REV__ENST00000280663.12_1_12:1902823-1909126:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	374.87664794921875	3	374.54271	1120.6063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.163	1	15.163	14.663	15.663	0								0	0	0	0.36846	1	3244	3244		40.058	19.111	1		+		47211	18127	31343	31469	47808	47808		678			0.050820648708622684
VSKAVANSK	9	Unmodified	_VSKAVANSK_					0	0	0		ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.26654052734375	2	452.266542	902.51853	0.37718	0.00017059	0.10645	4.8145E-05	0.48364	0.00021873	452.2667010108656	15.49	0.11012	15.49	15.419	15.529	0					5	3	2	0	0	0	0.33044	1	3495	3495		47.657	1.6851	1	54411			47212	7665	31344	31470	47809	47809					0.06337187271753919
VSKCLLPQF	9	Unmodified	_VSKCLLPQF_					0	0	0			REV__ENST00000560723.5_1_15:81605599-81615081:-|nuORF	REV__ENST00000560723.5_1_15:81605599-81615081:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.529541015625	3	345.528289	1033.56304	3.0278	0.0010462	0.44578	0.00015403	3.4736	0.0012002	345.5284830165569	16.867	0.25846	16.867	16.763	17.022	0					7	5	2	0	0	0	0.46194	1	4773	4773		36.447	11.321	1	287850	+		47213	20286	31345	31471	47810	47810					0.047598750935549106
VSKCPKIPE	9	Unmodified	_VSKCPKIPE_					0	0	0			REV__FRZB|p.S241Kfs*38|1|0.02|ENSG00000162998|chr2:182838485-182838486|-/ATAACTACTTT|frameshift_variant	REV__FRZB|p.S241Kfs*38|1|0.02|ENSG00000162998|chr2:182838485-182838486|-/ATAACTACTTT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7757263183594	2	500.778428	999.542302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.622	1	40.622	40.122	41.122	0								0	0	0	0.3063	1	16143	16143		33.922	3.418	1		+		47214	15852	31346	31472	47811	47811					0.04251284713916448
VSKDRPEI	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VSKDRPEI_					1	0	0			REV__ENST00000226951.10_1_4:10490183-10490225:-|nuORF	REV__ENST00000226951.10_1_4:10490183-10490225:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.2692565917969	2	493.269281	984.52401	0.77592	0.00038274	-1.6768	-0.0008271	-0.90085	-0.00044436	493.2686766990346	24.289	0.77043	24.289	23.691	24.462	0					35	17	3	0	0	0	0.42778	1	8102	8102		56.721	15.943	1	367940	+		47215	17902	31347	31473	47812	47812					0.03112866063565889
VSKEHPVVI	9	Unmodified	_VSKEHPVVI_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.8685302734375	3	336.53432	1006.58113	0.24123	8.1182E-05	-0.68454	-0.00023037	-0.44331	-0.00014919	336.53405570167246	20.948	0.67564	20.948	20.808	21.484	0					42	21	3	0	0	0	0.5654	1	5729	5729		19.104	0	1	257940			47216	1720	31348	31474	47813	47813					0.07810333339955378
VSKEHPVVI	9	Unmodified	_VSKEHPVVI_					0	0	0		ENSG00000084774|ENST00000264705|CAD;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5342712402344	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.798	1	30.798	30.298	31.298	0								0	0	0	0.39312	1	10149	10149		9.1829	0	1				47217	1720	31348	31474	47814	47814					0.07810333339955378
VSKGRMVEV	9	Unmodified	_VSKGRMVEV_					0	0	0			REV__ENST00000588303.1_1_19:45312375-45314729:+|nuORF	REV__ENST00000588303.1_1_19:45312375-45314729:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7799987792969	2	502.781502	1003.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.881	1	15.881	15.381	16.381	0								0	0	0	0.099216	1	4284	4284		71.877	1.0613	1		+		47218	12278	31349	31475	47815	47815					0.04681802945447089
VSKKAITKK	9	Unmodified	_VSKKAITKK_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.8938903808594	3	334.893848	1001.65972	0.51871	0.00017371	-0.23865	-7.9922E-05	0.28006	9.379E-05	334.89373643536493	14.531	0.13309	14.531	14.445	14.578	0					7	3	3	0	0	0	0.55048	1	3570	3570		27.047	0.3544	1	523480			47219	6956	31350	31476	47816	47816					0.15895185645024412
VSKKMENK	8	Oxidation (M)	_VSKKM(Oxidation (M))ENK_		VSKKM(1)ENK		VSKKM(44)ENK	0	0	1			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2674865722656	2	490.265684	978.516816	2.6616	0.0013049	0.72187	0.00035391	3.3835	0.0016588	490.2662332129784	39.415	0.41286	39.415	39.23	39.643	0					31	9	5	0	0	0	0.63077	1	15561	15561		44.117	44.117	1	2249200	+		47220	15116	31351	31477	47817	47817		573			0.02669810191491706
VSKKQKSETLA	11	Unmodified	_VSKKQKSETLA_					0	0	0			REV__ZMYM6|p.N1298Kfs*48|1|0.31|ENSG00000163867|chr1:34987188-34987189|-/T|frameshift_variant	REV__ZMYM6|p.N1298Kfs*48|1|0.31|ENSG00000163867|chr1:34987188-34987189|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.9063720703125	3	406.906594	1217.69795	-1.3898	-0.00056551	0.95608	0.00038903	-0.43369	-0.00017647	406.90704411726455	28.854	0.19761	28.854	28.769	28.966	0					20	7	4	0	0	0	0.69004	1	9325	9325		28.577	1.5294	1	429160	+		47221	22312	31352	31478	47818	47818					0.09781026769064738
VSKKSVSVLG	10	Unmodified	_VSKKSVSVLG_					0	0	0			REV__ENSG00000124003|ENST00000446656|MOGAT1	REV__ENSG00000124003|ENST00000446656|MOGAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	335.2096862792969	3	335.209725	1002.60735	0.37206	0.00012472	-0.62403	-0.00020918	-0.25197	-8.4462E-05	335.20952406347664	22.882	0.07814	22.882	22.812	22.89	0					4	2	2	0	0	0	0.70877	1	6535	6535		32.751	8.2313	1	66909	+		47222	14372	31353	31479	47819	47819					0.10614602511418525
VSKLCHLF	8	Unmodified	_VSKLCHLF_					0	0	0		ENST00000470105.1_1_9:116790870-116812444:+|nuORF;nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ZNF618|p.N872Mfs*52|2|0.38|ENSG00000157657|chr9:114049913-114049913|A/-|frameshift_variant;ENSG00000157657|ENST00000374126|ZNF618	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7629699707031	2	473.762581	945.510608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.897	1	26.897	26.397	27.397	0								0	0	0	1.7419	1	8728	8728		50.025	9.4519	1				47223	5227	31354	31480	47820	47820					0.03567336750620598
VSKLPRTPRMC	11	Carbamidomethyl (C),Oxidation (M)	_VSKLPRTPRM(Oxidation (M))C(Carbamidomethyl (C))_	VSKLPRTPRMC(1)	VSKLPRTPRM(1)C	VSKLPRTPRMC(41)	VSKLPRTPRM(41)C	0	1	1		ENST00000425916.4_1_10:77167483-77167783:+|nuORF	ENST00000425916.4_1_10:77167483-77167783:+|nuORF	ENST00000425916.4_1_10:77167483-77167783:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.2474365234375	3	454.244446	1359.71151	-0.42075	-0.00019112	3.2224	0.0014638	2.8017	0.0012726	454.2464996098722	23.989	1.0107	23.989	23.585	24.595	0					50	20	4	0	0	0	0.54316	1	8392	8392		41.08	8.0407	1	12419000			47224	9441	31355	31481	47821	47821	390	379			0.04604238004981198
VSKLSISHEI	10	Unmodified	_VSKLSISHEI_					0	0	0		nc|ENSG00000268235|B4DZS4-2|TCP11X1;ENSG00000268235|ENST00000622971|TCP11X1;ENSG00000215029|ENST00000642911|TCP11X2	nc|ENSG00000268235|B4DZS4-2|TCP11X1	nc|ENSG00000268235|B4DZS4-2|TCP11X1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	556.8193969726562	2	556.819138	1111.62372	0.55999	0.00031181	0.24916	0.00013873	0.80914	0.00045055	556.8191926348765	37.826	0.49961	37.826	37.383	37.882	0					33	15	3	0	0	0	0.49411	1	14291	14291		45.972	2.3215	1	189900			47225	7823	31356	31482	47822	47822					0.07237683677522
VSKPLLKIL	9	Unmodified	_VSKPLLKIL_					0	0	0		ENST00000261168.8_1_12:14654270-14654414:+|nuORF	ENST00000261168.8_1_12:14654270-14654414:+|nuORF	ENST00000261168.8_1_12:14654270-14654414:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	337.5706481933594	3	337.570594	1009.68995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.867	1	35.867	35.367	36.367	0								0	0	0	0.3693	1	11759	11759		19.997	5.1319	1				47226	8292	31357	31483	47823	47823					0.18549544310224064
VSKQEELL	8	Unmodified	_VSKQEELL_					0	0	0			REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF	REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.26611328125	2	473.266207	944.517862	-1.5323	-0.00072521	1.6417	0.00077696	0.10935	5.1754E-05	473.26698979732987	36.874	0.33415	36.874	36.764	37.098	0					27	18	2	0	0	0	0.62915	1	12471	12471		44.377	0	1	173990	+		47227	17199	31358	31484	47824	47824					0.04338347832049294
VSKQEELL	8	Unmodified	_VSKQEELL_					0	0	0			REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF	REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.26629638671875	2	473.266207	944.517862	0.59736	0.00028271	-1.1144	-0.00052741	-0.51704	-0.0002447	473.2657018799052	37.089	0.40262	37.089	36.962	37.365	0					24	12	3	0	0	0	0.48092	1	14464	14464		62.107	0	1	1052300	+		47228	17199	31358	31484	47825	47825					0.04338347832049294
VSKQEELL	8	Unmodified	_VSKQEELL_					0	0	0			REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF	REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2658996582031	2	473.266207	944.517862	0.65254	0.00030882	0.0073573	3.482E-06	0.65989	0.00031231	473.2664103507418	37.017	0.35444	37.017	36.914	37.268	0					17	7	3	0	0	0	0.3049	1	14444	14444		82.241	0	1	593630	+		47229	17199	31358	31484	47826	47826					0.04338347832049294
VSKSDIKS	8	Unmodified	_VSKSDIKS_					0	0	0		OXSM|p.V180Cfs*3|1|0.29|ENSG00000151093|chr3:25791551-25791552|-/T|frameshift_variant;OXSM|p.F179Lfs*45|2|0.27|ENSG00000151093|chr3:25791552-25791552|T/-|frameshift_variant;nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	OXSM|p.V180Cfs*3|1|0.29|ENSG00000151093|chr3:25791551-25791552|-/T|frameshift_variant	OXSM|p.V180Cfs*3|1|0.29|ENSG00000151093|chr3:25791551-25791552|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	432.24481201171875	2	432.245275	862.475997	-0.25644	-0.00011084	0.073013	3.1559E-05	-0.18343	-7.9285E-05	432.2452489074631	20.555	0.18195	20.555	20.454	20.636	0					9	5	3	0	0	0	0.75323	1	5499	5499		26.693	1.1189	1	170680			47230	4947	31359	31485	47827	47827					0.039257921435250864
VSKSLQAMK	9	Unmodified	_VSKSLQAMK_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;CAB39L|p.D96Mfs*2|3|0.25|ENSG00000102547|chr13:49359824-49359824|T/-|frameshift_variant	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.2828063964844	2	496.283877	990.553201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.906	1	19.906	19.406	20.406	0								0	0	0	0.18645	1	5498	5498		52.937	3.4007	1				47231	2176	31360	31486	47828	47828					0.057546870882106305
VSKTKEGKYR	10	Unmodified	_VSKTKEGKYR_					0	0	0		ENSG00000151704|ENST00000392666|KCNJ1;nc|ENSG00000151704|P48048-3|KCNJ1;nc|ENSG00000151704|P48048|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	598.3432006835938	2	598.343312	1194.67207	-0.018627	-1.1146E-05	-0.015204	-9.0974E-06	-0.033832	-2.0243E-05	598.3432443550529	28.366	0.16776	28.366	28.279	28.447	0					10	4	3	0	0	0	0.56063	1	10023	10023		38.754	4.832	1	261760			47232	4981	31361	31487	47829	47829					0.08252177317422138
VSKTLALPL	9	Unmodified	_VSKTLALPL_					0	0	0		ENSG00000137463|ENST00000398955|MGARP	ENSG00000137463|ENST00000398955|MGARP	ENSG00000137463|ENST00000398955|MGARP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.30462646484375	2	471.305136	940.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.07	1	38.07	37.57	38.57	0								0	0	0	0.3368	1	12848	12848		27.882	1.1893	1				47233	4166	31362	31488	47830	47830					0.12304405488077919
VSKVNLPV	8	Unmodified	_VSKVNLPV_					0	0	0		HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|36|3|anti-sense	HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|36|3|anti-sense	HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|36|3|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.26849365234375	2	428.268553	854.522553	-0.95195	-0.00040769	0.64603	0.00027667	-0.30592	-0.00013101	428.26877918507324	24.377	0.68604	24.377	24.053	24.739	0					48	22	3	0	0	0	0.63077	1	7395	7395		44.117	1.7207	1	376120			47234	11205	31363	31489	47831	47831					0.0894727676546836
VSKVPFGGLT	10	Unmodified	_VSKVPFGGLT_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.3021545410156	2	502.792392	1003.57023	-0.21305	-0.00010712	-4.2702	-0.002147	-4.4833	-0.0022541	502.79036775710915	24.131	0.10858	24.131	24.047	24.155	0					4	2	2	0	0	0	0.61187	1	7453	7453		32.812	3.6629	1	38631	+		47235	15549	31364	31490	47832	47832					0.06858930965665877
VSKYLPLV	8	Unmodified	_VSKYLPLV_					0	0	0			REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF	REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.7843322753906	2	459.786579	917.558604	-0.91821	-0.00042218	-3.6274	-0.0016678	-4.5456	-0.00209	459.7849481174282	18.866	0.083048	18.866	18.827	18.91	0					4	2	2	0	0	0	0.72892	1	5016	5016		29.842	0	1	148400	+		47236	13063	31365	31491	47833	47833					0.09652733942334635
VSLADPELC	9	Unmodified	_VSLADPELC_					0	0	0			REV__ENST00000254528.3_1_18:2847890-2884982:+|nuORF	REV__ENST00000254528.3_1_18:2847890-2884982:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.7328186035156	2	473.731143	945.447733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.712	1	19.712	19.212	20.212	0								0	0	0	0.3304	1	6277	6277		29.15	2.3535	1		+		47237	17976	31366	31492	47834	47834					-0.02717273828091038
VSLANTKH	8	Unmodified	_VSLANTKH_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.24591064453125	2	435.245609	868.476666	0.83129	0.00036181	-0.96862	-0.00042159	-0.13733	-5.9771E-05	435.2452744134079	33.805	0.25086	33.805	33.713	33.964	0					11	6	2	0	0	0	0.6088	1	12964	12964		47.657	1.6851	1	686160			47238	11408	31367	31493	47835	47835					0.037166315832337204
VSLAPQKGG	9	Unmodified	_VSLAPQKGG_					0	0	0		ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	428.747802734375	2	428.747985	855.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.687	1	20.687	20.187	21.187	0								0	0	0	0.14517	1	6459	6459		60.972	6.1956	1			+	47239	10010	31368	31494	47836	47836					0.04789515725997262
VSLAQAKIEKI	11	Unmodified	_VSLAQAKIEKI_					0	0	0		ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:87289-88257:+|nuORF;ENST00000568710.1_1_16:67585-84971:-|nuORF;nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.5833740234375	3	400.583451	1198.72852	0.46533	0.0001864	-0.88668	-0.00035519	-0.42135	-0.00016879	400.5831126734382	23.544	0.36489	23.544	23.318	23.683	0					21	7	4	0	0	0	0.64323	1	8028	8028		33.039	1.4051	1	582360			47240	6852	31369	31495	47837	47837					0.13710805154096306
VSLAVLGALGA	11	Unmodified	_VSLAVLGALGA_					0	0	0		N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant;N4BP1|p.I719Mfs*8|1|0.17|ENSG00000102921|chr16:48548066-48548075|ATTTGTCACA/-|frameshift_variant;ENSG00000102921|ENST00000262384|N4BP1	N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant	N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.8002014160156	2	485.800217	969.585882	-0.2457	-0.00011936	0.091686	4.4541E-05	-0.15401	-7.482E-05	485.8003167851397	39.678	0.24187	39.678	39.583	39.825	0					27	12	3	0	0	0	0.5473	1	14121	14121		40.778	0	1	235270			47241	2201	31370	31496	47838	47838					0.09987217482705546
VSLCFHRT	8	Unmodified	_VSLCFHRT_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7483825683594	2	481.747462	961.480371	0.90564	0.00043629	1.365	0.0006576	2.2707	0.0010939	481.74809687418764	17.285	0.30574	17.285	17.124	17.43	0					12	6	4	0	0	0	0.32815	1	4943	4943		79.451	2.1334	1	3549300			47242	4157	31371	31497	47839	47839					-0.0019102191456568107
VSLCVPEML	9	Unmodified	_VSLCVPEML_					0	0	0			REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF	REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7527160644531	2	495.753564	989.492575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.753	1	42.753	42.253	43.253	0								0	0	0	0.28996	1	16767	16767		37.159	0	1		+		47243	19389	31372	31498	47840	47840					-0.002591662864006139
VSLDGILSK	9	Unmodified	_VSLDGILSK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.M2832Nfs*53|1|0.25|ENSG00000131018|chr6:152385831-152385832|-/T|frameshift_variant;SYNE1|p.I2756*|1|0.12|ENSG00000131018|chr6:152387293-152387293|T/-|frameshift_variant;SYNE1|p.N2333Kfs*2|1|0.32|ENSG00000131018|chr6:152401168-152401169|-/T|frameshift_variant;SYNE1|p.S2126Pfs*10|1|0.33|ENSG00000131018|chr6:152409564-152409564|A/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.27587890625	2	466.276575	930.538597	-0.62244	-0.00029023	-0.13953	-6.5059E-05	-0.76196	-0.00035529	466.2764855891509	37.09	0.29464	37.09	36.996	37.29	0					25	14	3	0	0	0	0.24334	1	13268	13268		56.434	0	1	207380			47244	3690	31373	31499	47841	47841					0.07054938211706485
VSLDGKPV	8	Unmodified	_VSLDGKPV_					0	0	0		ENSG00000144369|ENST00000304698|FAM171B	ENSG00000144369|ENST00000304698|FAM171B	ENSG00000144369|ENST00000304698|FAM171B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	407.737060546875	2	407.737086	813.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.467	1	29.467	28.967	29.967	0								0	0	0	1.7419	1	9302	9302		55.504	4.1688	1				47245	4611	31374	31500	47842	47842					0.045427109774209384
VSLDLAQI	8	Unmodified	_VSLDLAQI_					0	0	0			REV__FKBP8|p.Q182Kfs*17|1|0.36|ENSG00000105701|chr19:18539378-18539378|G/-|frameshift_variant	REV__FKBP8|p.Q182Kfs*17|1|0.36|ENSG00000105701|chr19:18539378-18539378|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	429.7497863769531	2	429.750193	857.485833	0.95811	0.00041175	-1.4274	-0.00061345	-0.46933	-0.0002017	429.7495459445961	41.547	0.15677	41.547	41.479	41.636	0					10	6	2	0	0	0	0.28427	1	16328	16328		87.754	0	1	102500	+		47246	13792	31375	31501	47843	47843					0.05138980148888095
VSLDLAQI	8	Unmodified	_VSLDLAQI_					0	0	0			REV__FKBP8|p.Q182Kfs*17|1|0.36|ENSG00000105701|chr19:18539378-18539378|G/-|frameshift_variant	REV__FKBP8|p.Q182Kfs*17|1|0.36|ENSG00000105701|chr19:18539378-18539378|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7496643066406	2	429.750193	857.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.549	1	41.549	41.049	42.049	0								0	0	0	1.7419	1	16535	16535		58.782	0	1		+		47247	13792	31375	31501	47844	47844					0.05138980148888095
VSLDLAQI	8	Unmodified	_VSLDLAQI_					0	0	0			REV__FKBP8|p.Q182Kfs*17|1|0.36|ENSG00000105701|chr19:18539378-18539378|G/-|frameshift_variant	REV__FKBP8|p.Q182Kfs*17|1|0.36|ENSG00000105701|chr19:18539378-18539378|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	429.7500305175781	2	429.750193	857.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.495	1	41.495	40.995	41.995	0								0	0	0	1.7419	1	16510	16510		56.721	0	1		+		47248	13792	31375	31501	47845	47845					0.05138980148888095
VSLDLKSKE	9	Unmodified	_VSLDLKSKE_					0	0	0		ENST00000325042.2_1_7:22765745-22766153:-|nuORF	ENST00000325042.2_1_7:22765745-22766153:-|nuORF	ENST00000325042.2_1_7:22765745-22766153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7926330566406	2	509.792589	1017.57063	-0.48359	-0.00024653	0.314	0.00016008	-0.16959	-8.6454E-05	509.79270407681753	23.748	0.13622	23.748	23.669	23.805	0					7	4	2	0	0	0	0.25716	1	7181	7181		54.776	8.8041	1	107390			47249	8638	31376	31502	47846	47846					0.06254305894844947
VSLDNTVLG	9	Unmodified	_VSLDNTVLG_					0	0	0		TFR2|p.A510T|1|0.1|ENSG00000106327|chr7:100628082-100628082|C/T|missense_variant	TFR2|p.A510T|1|0.1|ENSG00000106327|chr7:100628082-100628082|C/T|missense_variant	TFR2|p.A510T|1|0.1|ENSG00000106327|chr7:100628082-100628082|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.25048828125	2	459.250557	916.486562	0.049917	2.2925E-05	-0.88492	-0.0004064	-0.83501	-0.00038348	459.2503213079485	26.344	0.23215	26.344	26.246	26.478	0					8	5	2	0	0	0	0.44593	1	8479	8479		37.812	7.4938	1	91744			47250	22526	31377	31503	47847	47847					0.024977747979392007
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2745666503906	2	498.274032	994.533512	0.22026	0.00010975	0.14589	7.2692E-05	0.36615	0.00018244	498.2740628869435	34.453	0.13942	34.453	34.382	34.521	0					12	6	2	0	0	0	0.02429	1	11254	11254		114.89	45.267	1	183490			47251	6844	31378	31504	47848	47848					0.03602634349078926
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	498.2736511230469	2	498.274032	994.533512	0.69133	0.00034447	-1.3594	-0.00067734	-0.66804	-0.00033286	498.27329310157893	34.694	0.2098	34.694	34.612	34.822	0					15	5	4	0	0	0	0.012936	1	12955	12955		134.77	36.184	1	1493100			47252	6844	31378	31504	47849	47849					0.03602634349078926
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	498.27392578125	2	498.274032	994.533512	-0.022116	-1.102E-05	0.0029005	1.4453E-06	-0.019215	-9.5743E-06	498.2739920899889	34.705	0.28828	34.705	34.624	34.912	0					22	8	4	0	0	0	0.0076184	1	13387	13387		146.79	56.416	1	1019300			47253	6844	31378	31504	47850	47850					0.03602634349078926
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	498.2743225097656	2	498.274032	994.533512	-0.23285	-0.00011602	1.1668	0.00058137	0.93392	0.00046535	498.27468680066625	34.511	0.17431	34.511	34.42	34.595	0					11	5	3	0	0	0	0.019258	1	12210	12210		123.21	55.714	1	199630			47254	6844	31378	31504	47851	47851					0.03602634349078926
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2740173339844	2	498.274032	994.533512	-0.72965	-0.00036356	0.72336	0.00036043	-0.0062899	-3.1341E-06	498.274367896955	34.643	0.21199	34.643	34.538	34.75	0					14	4	4	0	0	0	0.011389	1	13288	13288		138.06	63.807	1	1783100			47255	6844	31378	31504	47852	47852					0.03602634349078926
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	ENST00000481762.5_1_7:149260692-149318218:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.2738037109375	2	498.274032	994.533512	1.03	0.00051324	-1.7995	-0.00089666	-0.76949	-0.00038342	498.27301243886444	34.675	0.16174	34.675	34.572	34.734	0					11	3	4	0	0	0	0.12278	1	13325	13325		74.165	24.629	1	963630			47256	6844	31378	31504	47853	47853					0.03602634349078926
VSLEASDVIS	10	Unmodified	_VSLEASDVIS_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.26702880859375	2	510.266404	1018.51826	0.96342	0.0004916	0.55699	0.00028421	1.5204	0.00077581	510.2664241498388	23.184	0.32192	23.184	23.134	23.456	0					13	7	3	0	0	0	0.39566	1	7651	7651		56.721	10.769	1	1455600			47257	4967	31379	31505	47854	47854					0.009737227612504284
VSLEKQDK	8	Unmodified	_VSLEKQDK_					0	0	0			REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	REV__UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7632141113281	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.842	1	26.842	26.342	27.342	0								0	0	0	1.7419	1	8205	8205		37.812	0	1		+		47258	15520	31380	31506	47855	47855					0.03817463689279066
VSLFCLVP	8	Unmodified	_VSLFCLVP_					0	0	0		ENST00000259371.6_1_9:124546428-124546671:+|nuORF	ENST00000259371.6_1_9:124546428-124546671:+|nuORF	ENST00000259371.6_1_9:124546428-124546671:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.24371337890625	2	439.246232	876.477911	-3.0785	-0.0013522	-3.2871	-0.0014438	-6.3656	-0.0027961	439.2451748651451	28.023	0.1775	28.023	27.892	28.069	0					9	4	3	0	0	0	0.41446	1	9234	9234		69.093	1.5993	1	129530			47259	8285	31381	31507	47856	47856					0.03473129627764138
VSLGEKNCQIN	11	Unmodified	_VSLGEKNCQIN_					0	0	0			REV__nc|ENSG00000121904|Q7Z408-3|CSMD2	REV__nc|ENSG00000121904|Q7Z408-3|CSMD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.8040771484375	2	602.803162	1203.59177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.459	1	24.459	23.959	24.959	0								0	0	0	0.3769	1	7490	7490		41.427	4.9799	1		+		47260	21002	31382	31508	47857	47857					-0.0018805206793786056
VSLGHSVSK	9	Unmodified	_VSLGHSVSK_					0	0	0		nc|ENSG00000198182|Q96SK3-3|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2586669921875	2	457.258717	912.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.515	1	18.515	18.015	19.015	0								0	0	0	0.080575	1	4849	4849		77.318	16.346	1				47261	11714	31383	31509	47858	47858					0.043129007547122455
VSLGHSVSK	9	Unmodified	_VSLGHSVSK_					0	0	0		nc|ENSG00000198182|Q96SK3-3|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2584228515625	2	457.258717	912.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.595	1	18.595	18.095	19.095	0								0	0	0	0.045272	1	4884	4884		88.177	27.205	1				47262	11714	31383	31509	47859	47859					0.043129007547122455
VSLGISIVGG	10	Unmodified	_VSLGISIVGG_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2712097167969	2	451.271293	900.528032	-0.33377	-0.00015062	-0.36835	-0.00016623	-0.70212	-0.00031685	451.27133340266016	33.368	0.31402	33.368	33.165	33.479	0					12	7	2	0	0	0	0.16018	1	12805	12805		84.916	2.165	1	137160			47263	3820	31384	31510	47860	47860					0.07378955557283007
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.27362060546875	2	437.273835	872.533118	0.24366	0.00010655	-0.54601	-0.00023876	-0.30235	-0.00013221	437.27358610592916	32.674	0.18213	32.674	32.581	32.763	0					13	7	2	0	0	0	0.047855	1	10560	10560		96.034	0	1	215010			47264	7446;7474	31385	31511	47861	47861					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.27374267578125	2	437.273835	872.533118	0.62478	0.0002732	-1.145	-0.00050067	-0.52021	-0.00022747	437.2733067574236	32.946	0.16457	32.946	32.865	33.03	0					9	4	3	0	0	0	0.0047071	1	12134	12134		159.28	0	1	591460			47265	7446;7474	31385	31511	47862	47862					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2735595703125	2	437.273835	872.533118	0.62712	0.00027422	-0.39115	-0.00017104	0.23597	0.00010318	437.2734358680497	33.277	0.13133	33.277	33.22	33.351	0					6	3	2	0	0	0	0.41958	1	12300	12300		40.058	0	1	60099			47266	7446;7474	31385	31511	47863	47863					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2735900878906	2	437.273835	872.533118	-0.39836	-0.00017419	-0.11527	-5.0404E-05	-0.51363	-0.0002246	437.2737597112929	33.256	0.28281	33.256	33.173	33.456	0					14	7	3	0	0	0	0.082776	1	12286	12286		83.647	0	1	368650			47267	7446;7474	31385	31511	47864	47864					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.2737731933594	2	437.273835	872.533118	-0.92472	-0.00040436	0.72597	0.00031745	-0.19875	-8.6907E-05	437.27401650542004	33.082	0.20468	33.082	33.011	33.216	0					13	9	2	0	0	0	0.15558	1	11075	11075		66.962	0	1	117550			47268	7446;7474	31385	31511	47865	47865					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2736511230469	2	437.273835	872.533118	0.72627	0.00031758	-1.1884	-0.00051964	-0.46209	-0.00020206	437.27331985575375	33.264	0.22545	33.264	33.176	33.402	0					12	5	3	0	0	0	0.082776	1	12713	12713		83.647	0	1	461030			47269	7446;7474	31385	31511	47866	47866					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2734375	2	437.273835	872.533118	0.29044	0.000127	0.0083486	3.6506E-06	0.29879	0.00013065	437.2733923866047	32.697	0.1508	32.697	32.639	32.789	0					10	4	3	0	0	0	0.10506	1	11395	11395		78.264	0	1	78748			47270	7446;7474	31385	31511	47867	47867					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2737121582031	2	437.273835	872.533118	-0.63359	-0.00027705	0.27956	0.00012224	-0.35403	-0.00015481	437.27397810625433	33.069	0.19043	33.069	33.002	33.192	0					9	6	2	0	0	0	0.070005	1	11563	11563		88.177	0	1	89907			47271	7446;7474	31385	31511	47868	47868					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2739562988281	2	437.273835	872.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.684	1	32.684	32.184	33.184	0								0	0	0	0.040385	1	11389	11389		90.601	0	1				47272	7446;7474	31385	31511	47869	47869					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2736511230469	2	437.273835	872.533118	-0.55872	-0.00024431	0.16804	7.3479E-05	-0.39068	-0.00017083	437.27388109268804	32.883	0.17004	32.883	32.771	32.941	0					6	3	2	0	0	0	0.0088974	1	12448	12448		143.37	0	1	629920			47273	7446;7474	31385	31511	47870	47870					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2738952636719	2	437.273835	872.533118	0.7215	0.00031549	-0.88683	-0.00038779	-0.16533	-7.2293E-05	437.27336638925715	32.918	0.16629	32.918	32.806	32.972	0					5	3	2	0	0	0	0.02429	1	12443	12443		114.89	0	1	573770			47274	7446;7474	31385	31511	47871	47871					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ZNF624|p.I325Nfs*9|1|0.21|ENSG00000197566|chr17:16623912-16623913|-/T|frameshift_variant;ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant;ENSG00000018869|ENST00000586929|ZNF582;ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant;ZNF624|p.K787Ifs*14|1|0.11|ENSG00000197566|chr17:16622526-16622527|-/ATAAATGTAATGAA|frameshift_variant;ENSG00000197566|ENST00000311331|ZNF624	ENSG00000197302|ENST00000316491|KRBOX5;ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	ZNF624|p.K666Nfs*130|1|0.46|ENSG00000197566|chr17:16622888-16622888|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2735290527344	2	437.273835	872.533118	0.72227	0.00031583	-1.5961	-0.00069791	-0.87378	-0.00038208	437.2731583959929	33.24	0.31404	33.24	33.135	33.449	0					10	6	2	0	0	0	0.19952	1	12629	12629		61.691	0	1	529790			47275	7446;7474	31385	31511	47872	47872					0.0917525941989652
VSLGLVVSK	9	Unmodified	_VSLGLVVSK_					0	0	0		ENST00000566541.5_3_16:31886566-31901532:+|nuORF;ZNF267|p.L310Sfs*2|1|0.08|ENSG00000185947|chr16:31915175-31915176|-/T|frameshift_variant;ENSG00000185947|ENST00000300870|ZNF267	ENST00000566541.5_3_16:31886566-31901532:+|nuORF	ENST00000566541.5_3_16:31886566-31901532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2896423339844	2	451.289485	900.564418	-1.1897	-0.0005369	0.62741	0.00028314	-0.5623	-0.00025376	451.2898421117165	36.223	0.089249	36.223	36.156	36.245	0					6	4	2	0	0	0	0.44593	1	12270	12270		37.812	0	1	50016			47276	7115	31386	31512	47873	47873					0.11015832453995245
VSLGLVVSK	9	Unmodified	_VSLGLVVSK_					0	0	0		ENST00000566541.5_3_16:31886566-31901532:+|nuORF;ZNF267|p.L310Sfs*2|1|0.08|ENSG00000185947|chr16:31915175-31915176|-/T|frameshift_variant;ENSG00000185947|ENST00000300870|ZNF267	ENST00000566541.5_3_16:31886566-31901532:+|nuORF	ENST00000566541.5_3_16:31886566-31901532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2891845703125	2	451.289485	900.564418	0.70267	0.00031711	-1.0937	-0.00049356	-0.391	-0.00017645	451.28892746686796	36.425	0.15919	36.425	36.35	36.509	0					8	4	2	0	0	0	0.14578	1	14193	14193		68.846	7.1549	1	186250			47277	7115	31386	31512	47874	47874					0.11015832453995245
VSLGRVLIQ	9	Unmodified	_VSLGRVLIQ_					0	0	0		ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	ENST00000570699.1_1_17:636236-644807:+|nuORF	ENST00000570699.1_1_17:636236-644807:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	328.87811279296875	3	328.878198	983.612765	-1.907	-0.00062718	2.0238	0.00066557	0.11673	3.839E-05	328.87886556759986	13.783	0.20155	13.783	13.612	13.814	0					17	11	3	0	0	0	0.59802	1	2808	2808		16.717	1.3843	1	123250			47278	6020	31387	31513	47875	47875					0.12030326093884014
VSLGRYTPT	9	Unmodified	_VSLGRYTPT_					0	0	0		nc|ENSG00000163995|Q6H8Q1-4|ABLIM2;ABLIM2|p.S399Afs*29|1|0.08|ENSG00000163995|chr4:8020278-8020278|G/-|frameshift_variant;nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;ABLIM2|p.D469Mfs*94|1|0.32|ENSG00000163995|chr4:8008170-8008170|C/-|frameshift_variant;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2	nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	331.85040283203125	3	331.850308	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.986	1	16.986	16.486	17.486	0								0	0	0	0.35507	1	4965	4965		31.53	14.812	1				47279	24	31388	31514	47876	47876					0.032531699261767244
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.2752685546875	2	473.275521	944.536489	0.25066	0.00011863	-0.68649	-0.0003249	-0.43583	-0.00020627	473.27533140973105	34.375	0.56432	34.375	34.219	34.783	0					36	14	4	0	0	0	0.0040894	1	12774	12774		162.25	82.801	1	2536400			47280	877	31389	31515	47877	47877					0.06200186202261193
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.2751770019531	2	473.275521	944.536489	-1.5457	-0.00073156	0.3665	0.00017346	-1.1792	-0.0005581	473.2757708567615	34.176	0.27885	34.176	34.059	34.337	0					30	12	3	0	0	0	0.032052	1	11500	11500		107.01	35.13	1	361370			47281	877	31389	31515	47878	47878					0.06200186202261193
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2756042480469	2	473.275521	944.536489	-0.12207	-5.7772E-05	0.31931	0.00015112	0.19724	9.3351E-05	473.2757422934604	34.39	0.28983	34.39	34.225	34.515	0					13	7	2	0	0	0	0.021961	1	13226	13226		118.74	47.365	1	221260			47282	877	31389	31515	47879	47879					0.06200186202261193
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2754821777344	2	473.275521	944.536489	0.599	0.00028349	-1.1094	-0.00052505	-0.51038	-0.00024155	473.2751376207231	34.373	0.62679	34.373	34.213	34.84	0					50	16	5	0	0	0	0.15163	1	13220	13220		67.494	7.1997	1	1827100			47283	877	31389	31515	47880	47880					0.06200186202261193
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.777587890625	2	473.275521	944.536489	-0.13683	-6.4758E-05	0.35675	0.00016884	0.21992	0.00010408	473.2756809807413	34.148	0.31057	34.148	33.999	34.309	0					19	9	3	0	0	0	0.063823	1	12036	12036		90.37	90.37	1	250900			47284	877	31389	31515	47881	47881					0.06200186202261193
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2742004394531	2	473.275521	944.536489	-0.49963	-0.00023646	-0.87618	-0.00041467	-1.3758	-0.00065113	473.27531415792606	34.133	0.30343	34.133	34.027	34.331	0					24	9	4	0	0	0	0.11898	1	12030	12030		75.043	20.267	1	697300			47285	877	31389	31515	47882	47882					0.06200186202261193
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.27508544921875	2	473.275521	944.536489	-0.58277	-0.00027581	-0.23022	-0.00010896	-0.81298	-0.00038476	473.27555659975866	34.353	0.40517	34.353	34.15	34.555	0					27	8	5	0	0	0	0.0017279	1	13120	13120		176.09	176.09	1	2893000			47286	877	31389	31515	47883	47883					0.06200186202261193
VSLGTPIMK	9	Unmodified	_VSLGTPIMK_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.2747802734375	2	473.275521	944.536489	0.65797	0.0003114	-1.693	-0.00080124	-1.035	-0.00048984	473.2748860213884	34.336	0.55002	34.336	34.134	34.684	0					43	11	5	0	0	0	0.035062	1	13116	13116		104.06	18.697	1	4261300			47287	877	31389	31515	47884	47884					0.06200186202261193
VSLGTPIMK	9	Oxidation (M)	_VSLGTPIM(Oxidation (M))K_		VSLGTPIM(1)K		VSLGTPIM(75)K	0	0	1		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.27252197265625	2	481.272978	960.531403	-0.13198	-6.3516E-05	-1.1203	-0.00053916	-1.2523	-0.00060268	481.27258878219436	28.843	0.24897	28.843	28.758	29.007	0					11	6	3	0	0	0	0.11898	1	10244	10244		75.043	14.071	1	343160			47288	877	31389	31516	47885	47885		40			0.049558823396409935
VSLGTPIMK	9	Oxidation (M)	_VSLGTPIM(Oxidation (M))K_		VSLGTPIM(1)K		VSLGTPIM(96)K	0	0	1		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.27239990234375	2	481.272978	960.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.847	1	28.847	28.347	29.347	0								0	0	0	0.029874	1	10616	10616		95.815	10.9	1				47289	877	31389	31516	47886	47886		40			0.049558823396409935
VSLGTPIMK	9	Oxidation (M)	_VSLGTPIM(Oxidation (M))K_		VSLGTPIM(1)K		VSLGTPIM(67)K	0	0	1		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.27264404296875	2	481.272978	960.531403	-2.9233	-0.0014069	0.52007	0.00025029	-2.4032	-0.0011566	481.274312853009	28.635	0.35962	28.635	28.39	28.75	0					15	9	3	0	0	0	0.15163	1	9536	9536		67.494	8.7117	1	141230			47290	877	31389	31516	47887	47887		40			0.049558823396409935
VSLGTPIMK	9	Oxidation (M)	_VSLGTPIM(Oxidation (M))K_		VSLGTPIM(1)K		VSLGTPIM(93)K	0	0	1		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.272705078125	2	481.272978	960.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.81	1	28.81	28.31	29.31	0								0	0	0	0.03526	1	10481	10481		93.143	16.297	1				47291	877	31389	31516	47888	47888		40			0.049558823396409935
VSLGWGLSGE	10	Unmodified	_VSLGWGLSGE_					0	0	0			REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7933349609375	2	502.756007	1003.49746	-0.48505	-0.00024386	0.59523	0.00029926	0.11018	5.5393E-05	502.75627204711253	34.547	0.75311	34.547	34.443	35.196	0					27	15	4	0	0	0	0.55603	1	13407	13407		39.253	1.4413	1	1279400	+		47292	18562	31390	31517	47889	47889					-0.004148228277585986
VSLGYVVID	9	Unmodified	_VSLGYVVID_					0	0	0		ENST00000507854.1_1_4:420846-467772:-|nuORF	ENST00000507854.1_1_4:420846-467772:-|nuORF	ENST00000507854.1_1_4:420846-467772:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7686767578125	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.171	1	23.171	22.671	23.671	0								0	0	0	0.28164	1	7818	7818		38.806	0	1				47293	10204	31391	31518	47890	47890					0.04447535837425676
VSLHGVASL	9	Unmodified	_VSLHGVASL_					0	0	0			REV__ENST00000498689.5_1_20:54967438-54967576:+|nuORF	REV__ENST00000498689.5_1_20:54967438-54967576:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.7555847167969	2	441.75581	881.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.668	1	32.668	32.168	33.168	0								0	0	0	0.28996	1	11381	11381		37.159	0	1		+		47294	19799	31392	31519	47891	47891					0.05157802243024889
VSLHLSPR	8	Unmodified	_VSLHLSPR_					0	0	0		TLE2|p.Q379Rfs*13|1|0.33|ENSG00000065717|chr19:3009580-3009580|G/-|frameshift_variant	TLE2|p.Q379Rfs*13|1|0.33|ENSG00000065717|chr19:3009580-3009580|G/-|frameshift_variant	TLE2|p.Q379Rfs*13|1|0.33|ENSG00000065717|chr19:3009580-3009580|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	455.2394714355469	2	454.769252	907.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.313	1	26.313	25.813	26.813	0								0	0	0	1.7419	1	9403	9403		31.955	0	1				47295	22535	31393	31520	47892	47892					0.06648910854221413
VSLIGGPGSHI	11	Unmodified	_VSLIGGPGSHI_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7926025390625	2	518.792924	1035.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.082	1	15.082	14.582	15.582	0								0	0	0	0.41918	1	3212	3212		32.812	2.3088	1				47296	7400	31394	31521	47893	47893					0.05493145334571636
VSLILSPKF	9	Unmodified	_VSLILSPKF_					0	0	0		ENST00000539693.1_1_19:19313985-19314099:-|nuORF	ENST00000539693.1_1_19:19313985-19314099:-|nuORF	ENST00000539693.1_1_19:19313985-19314099:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3133239746094	2	502.312961	1002.61137	-0.52326	-0.00026284	1.4435	0.00072508	0.92022	0.00046224	502.3137032394634	44.86	0.49308	44.86	44.538	45.031	0					30	20	2	0	0	0	0.38666	1	17884	17884		27.882	4.8398	1	83378			47297	10525	31395	31522	47894	47894					0.11016692005136974
VSLKEAQKVN	10	Unmodified	_VSLKEAQKVN_					0	0	0		KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant;KIF27|p.K1223Tfs*2|1|0.11|ENSG00000165115|chr9:83842289-83842290|TT/-|frameshift_variant;nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27	KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	372.55206298828125	3	372.552151	1114.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.629	1	28.629	28.129	29.129	0								0	0	0	0.36846	1	10395	10395		40.058	11.481	1				47298	5760	31396	31523	47895	47895					0.081890860518115
VSLKGIGSI	9	Unmodified	_VSLKGIGSI_					0	0	0			REV__ENST00000497196.5_1_22:38889517-38891019:-|nuORF	REV__ENST00000497196.5_1_22:38889517-38891019:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2731018066406	2	437.273835	872.533118	-0.27843	-0.00012175	-0.59474	-0.00026006	-0.87317	-0.00038181	437.27351778592407	33.018	0.13006	33.018	32.96	33.09	0					11	6	2	0	0	0	0.18416	1	10709	10709		63.534	12.341	1	59897	+		47299	19782	31397	31524	47896	47896					0.0917525941989652
VSLKQVEKY	9	Unmodified	_VSLKQVEKY_					0	0	0		KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant;ENSG00000183655|ENST00000337975|KLHL25	KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	547.3175048828125	2	547.316232	1092.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.445	1	27.445	26.945	27.945	0								0	0	0	0.29996	1	8979	8979		35.152	0.97948	1				47300	6975	31398	31525	47897	47897					0.0753058516584133
VSLKQVEKY	9	Unmodified	_VSLKQVEKY_					0	0	0		KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant;ENSG00000183655|ENST00000337975|KLHL25	KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.3165893554688	2	547.316232	1092.61791	0.53539	0.00029303	-0.21015	-0.00011502	0.32524	0.00017801	547.3155736932125	27.518	0.16948	27.518	27.459	27.628	0					5	3	2	0	0	0	0.11411	1	9873	9873		69.628	0	1	98125			47301	6975	31398	31525	47898	47898					0.0753058516584133
VSLKTFVLK	9	Unmodified	_VSLKTFVLK_					0	0	0		nc|ENSG00000146054|Q9C029-3|TRIM7;nc|ENSG00000146054|Q9C029-4|TRIM7;ENSG00000146054|ENST00000274773|TRIM7	nc|ENSG00000146054|Q9C029-3|TRIM7	nc|ENSG00000146054|Q9C029-3|TRIM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.8346557617188	2	517.83406	1033.65357	3.3334	0.0017261	-2.4461	-0.0012667	0.88732	0.00045949	517.8326996104656	37.969	0.42991	37.969	37.821	38.251	0					10	9	2	0	0	0	0.58342	1	14898	14898		16.473	0	1	240520			47302	4708	31399	31526	47899	47899					0.1380866741351383
VSLLGLDIK	9	Unmodified	_VSLLGLDIK_					0	0	0		ENST00000586718.1_1_18:21121209-21121323:-|nuORF;NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant;ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;NPC1|p.G993Efs*4|1|0.22|ENSG00000141458|chr18:23538605-23538605|C/-|frameshift_variant;NPC1|p.F1207Lfs*35|1|0.33|ENSG00000141458|chr18:23533488-23533488|A/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1	ENST00000586718.1_1_18:21121209-21121323:-|nuORF	ENST00000586718.1_1_18:21121209-21121323:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.30242919921875	2	479.302593	956.590633	1.042	0.00049945	-0.58627	-0.000281	0.45576	0.00021845	479.3022850550496	34.373	0.25771	34.373	34.249	34.506	0					28	12	3	0	0	0	0.47038	1	11211	11211		35.618	0	1	180180			47303	4449	31400	31527	47900	47900					0.11060101625457719
VSLLQNPPTVG	11	Unmodified	_VSLLQNPPTVG_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.8214721679688	2	562.819138	1123.62372	1.0671	0.0006006	3.9859	0.0022433	5.053	0.0028439	562.8210860624694	43.748	0.15489	43.748	43.636	43.791	0					7	4	2	0	0	0	0.55715	1	17515	17515		40.058	7.2458	1	54766			47304	1093	31401	31528	47901	47901					0.06685683677505949
VSLLSHRW	8	Unmodified	_VSLLSHRW_					0	0	0		ENST00000577043.1_1_16:2867692-2871170:+|nuORF;nc|ENSG00000007038|Q9Y6M0-3|PRSS21;nc|ENSG00000007038|Q9Y6M0-2|PRSS21;ENSG00000007038|ENST00000005995|PRSS21	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.2817077636719	2	499.282526	996.550499	0.29624	0.00014791	-1.5262	-0.000762	-1.2299	-0.00061409	499.28157746243767	29.128	0.13295	29.128	29.068	29.201	0					9	4	3	0	0	0	0.66989	1	9157	9157		35.618	3.6634	1	119970			47305	10834	31402	31529	47902	47902					0.05208599745549236
VSLLVFLNV	9	Unmodified	_VSLLVFLNV_					0	0	0			REV__nc|ENSG00000135063|Q15884|ENTREP1	REV__nc|ENSG00000135063|Q15884|ENTREP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.3127136230469	2	502.312961	1002.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.681	1	44.681	44.181	45.181	0								0	0	0	0.28666	1	14470	14470		30.504	7.4612	1		+		47306	14780	31403	31530	47903	47903					0.11016692005136974
VSLMGFPLR	9	Unmodified	_VSLMGFPLR_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|347|3|anti-sense;chr15:53523322-53540662|232|17.27|0.17|6.68|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|84	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|347|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|347|3|anti-sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.2880859375	2	510.288963	1018.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.841	1	13.841	13.341	14.341	0								0	0	0	0.3368	1	3461	3461		27.882	3.3782	1				47307	520	31404	31531	47904	47904					0.054832948134276194
VSLMIKLAKKQ	11	Unmodified	_VSLMIKLAKKQ_					0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	420.268310546875	3	420.268698	1257.78426	0.43739	0.00018382	-0.35303	-0.00014837	0.084365	3.5456E-05	420.2685537194253	19.027	0.13913	19.027	18.967	19.106	0					6	4	2	0	0	0	0.75314	1	4857	4857		22.562	0.78116	1	31475	+		47308	21999	31405	31532	47905	47905					0.1656831507004881
VSLNAAPQLVT	11	Unmodified	_VSLNAAPQLVT_					0	0	0			REV__ENST00000496016.1_1_22:24487805-24487940:+|nuORF	REV__ENST00000496016.1_1_22:24487805-24487940:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.8185424804688	2	556.819138	1111.62372	-0.96134	-0.00053529	1.988	0.001107	1.0267	0.00057168	556.8202484250131	37.667	0.39265	37.667	37.365	37.758	0					29	19	2	0	0	0	0.55715	1	13405	13405		40.058	8.5284	1	60969	+		47309	19769	31406	31533	47906	47906					0.07237683677522
VSLPCGRS	8	Unmodified	_VSLPCGRS_					0	0	0		ENST00000355072.9_1_4:3241849-3242173:+|nuORF	ENST00000355072.9_1_4:3241849-3242173:+|nuORF	ENST00000355072.9_1_4:3241849-3242173:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	409.7130126953125	2	409.713088	817.411622	0.63603	0.00026059	-0.65549	-0.00026856	-0.019458	-7.9721E-06	409.71272035698576	20.695	0.14462	20.695	20.596	20.741	0					8	4	2	0	0	0	0.72381	1	5572	5572		30.504	6.3009	1	61600			47310	8792	31407	31534	47907	47907					-0.004386862142609971
VSLPKYFY	8	Unmodified	_VSLPKYFY_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.775634765625	2	508.776211	1015.53787	-0.39796	-0.00020247	1.3373	0.00068038	0.93934	0.00047791	508.7774603640321	35.182	0.36606	35.182	34.986	35.352	0					24	10	3	0	0	0	0.6282	1	13599	13599		44.531	3.9584	1	223240			47311	5768	31408	31535	47908	47908					0.03072143562656038
VSLQEPSLY	9	Unmodified	_VSLQEPSLY_					0	0	0		nc|ENSG00000111481|P61923-4|COPZ1	nc|ENSG00000111481|P61923-4|COPZ1	nc|ENSG00000111481|P61923-4|COPZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.2703247070312	2	518.27149	1034.52843	1.5766	0.0008171	-1.3142	-0.00068109	0.26242	0.00013601	518.2706542737262	44.1	0.45507	44.1	43.981	44.436	0					28	19	2	0	0	0	0.42902	1	17714	17714		39.253	0.23134	1	73020			47312	11482	31409	31536	47909	47909					0.012543304864948368
VSLQLESITQ	10	Unmodified	_VSLQLESITQ_					0	0	0			REV__ENSG00000224389|ENST00000435363|C4B	REV__ENSG00000224389|ENST00000435363|C4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.2099304199219	3	373.208161	1116.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.973	1	39.973	39.473	40.473	0								0	0	0	0.39244	1	15837	15837		24.232	0	1		+		47313	17623	31410	31537	47910	47910					0.04901673577978727
VSLQPEKPVV	10	Unmodified	_VSLQPEKPVV_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B;ENST00000504528.2_1_4:113747508-113747850:+|nuORF;nc|ENSG00000141384|Q92750-2|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.3228759765625	2	548.324057	1094.63356	0.48428	0.00026554	-3.7501	-0.0020563	-3.2658	-0.0017907	548.322245201007	19.397	0.22833	19.397	19.294	19.522	0					7	5	2	0	0	0	0.3337	1	5856	5856		63.534	7.1001	1	698890			47314	4441	31411	31538	47911	47911					0.09002871682878322
VSLRSYGTI	9	Unmodified	_VSLRSYGTI_					0	0	0		ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	332.5220947265625	3	332.522192	994.544745	0.54113	0.00017994	-0.97077	-0.0003228	-0.42964	-0.00014287	332.5219638271298	13.049	0.18565	13.049	12.958	13.144	0					6	4	2	0	0	0	0.61124	1	3094	3094		9.1829	0	1	289380			47315	7856	31412	31539	47912	47912					0.04725456443236453
VSLRVKTHEQ	10	Unmodified	_VSLRVKTHEQ_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.56304931640625	3	399.56305	1195.66732	0.17872	7.1409E-05	0.31353	0.00012528	0.49225	0.00019668	399.56318380097974	18.026	0.15821	18.026	17.876	18.034	0					5	3	2	0	0	0	0.73511	1	4610	4610		16.007	2.4988	1	142130	+		47316	13669	31413	31540	47913	47913					0.07731293174674647
VSLRYQCYPE	10	Unmodified	_VSLRYQCYPE_					0	0	0		ENST00000416543.5_1_4:106629178-106629382:-|nuORF	ENST00000416543.5_1_4:106629178-106629382:-|nuORF	ENST00000416543.5_1_4:106629178-106629382:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	419.86993408203125	3	419.869262	1256.58596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.967	1	15.967	15.467	16.467	0								0	0	0	0.4201	1	4472	4472		19.263	1.7947	1				47317	9361	31414	31541	47914	47914					-0.032071505795784105
VSLSAKGDSL	10	Unmodified	_VSLSAKGDSL_					0	0	0			REV__PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant	REV__PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.76806640625	2	488.769114	975.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.185	1	19.185	18.685	19.685	0								0	0	0	0.3639	1	5744	5744		40.778	1.972	1		+		47318	14045	31415	31542	47915	47915					0.034934463437252816
VSLSALATVA	10	Unmodified	_VSLSALATVA_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2765197753906	2	466.276575	930.538597	-0.49875	-0.00023255	-0.098206	-4.5791E-05	-0.59695	-0.00027835	466.2768204871337	29.017	0.51578	29.017	28.758	29.274	0					23	10	3	0	0	0	0.30737	1	10590	10590		66.429	7.6473	1	771920	+		47319	13085	31416	31543	47916	47916					0.07054938211717854
VSLSAVDKQ	9	Unmodified	_VSLSAVDKQ_					0	0	0			REV__TPR|p.A450D|1|0.28|ENSG00000047410|chr1:186359839-186359839|G/T|missense_variant	REV__TPR|p.A450D|1|0.28|ENSG00000047410|chr1:186359839-186359839|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7637939453125	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.037	1	27.037	26.537	27.537	0								0	0	0	0.22075	1	9629	9629		47.96	0	1		+		47320	21662	31417	31544	47917	47917					0.03817463689279066
VSLSAVDKQ	9	Unmodified	_VSLSAVDKQ_					0	0	0			REV__TPR|p.A450D|1|0.28|ENSG00000047410|chr1:186359839-186359839|G/T|missense_variant	REV__TPR|p.A450D|1|0.28|ENSG00000047410|chr1:186359839-186359839|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.7634582519531	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.075	1	27.075	26.575	27.575	0								0	0	0	0.16453	1	9647	9647		56.434	0	1		+		47321	21662	31417	31544	47918	47918					0.03817463689279066
VSLSFQSRK	9	Unmodified	_VSLSFQSRK_					0	0	0		ENST00000587838.1_1_17:74554648-74557410:+|nuORF;ENST00000591956.1_1_17:74553872-74557410:+|nuORF	ENST00000587838.1_1_17:74554648-74557410:+|nuORF	ENST00000587838.1_1_17:74554648-74557410:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.298828125	2	526.298373	1050.58219	0.22319	0.00011746	0.13711	7.2163E-05	0.3603	0.00018963	526.2985624041521	25.333	0.17004	25.333	25.222	25.392	0					6	3	2	0	0	0	0.24334	1	8989	8989		56.434	5.2411	1	224130			47322	10917	31418	31545	47919	47919					0.058925477088678235
VSLSHPTKQN	10	Unmodified	_VSLSHPTKQN_					0	0	0		ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.7974243164062	2	555.798737	1109.58292	0.11431	6.3531E-05	-2.3591	-0.0013112	-2.2448	-0.0012477	555.7973470054209	25.892	0.24419	25.892	25.76	26.005	0					6	4	2	0	0	0	0.52275	1	8084	8084		42.864	4.1107	1	273220			47323	8693	31419	31546	47920	47920					0.03251342357907561
VSLSILEPKQ	10	Unmodified	_VSLSILEPKQ_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	371.8877258300781	3	371.888651	1112.64412	0.78164	0.00029068	-1.5481	-0.00057572	-0.76647	-0.00028504	371.88750138471624	21.412	0.31359	21.412	21.311	21.624	0					22	7	4	0	0	0	0.62235	1	6808	6808		23.378	0	1	721290	+		47324	17854	31420	31547	47921	47921					0.0923085433732922
VSLSKVEPR	9	Unmodified	_VSLSKVEPR_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.80108642578125	2	507.800749	1013.58694	-0.38238	-0.00019417	0.30185	0.00015328	-0.080532	-4.0894E-05	507.8009599236129	17.676	0.26857	17.676	17.466	17.735	0					13	5	4	0	0	0	0.15163	1	5258	5258		67.494	5.8024	1	1044600			47325	1636	31421	31548	47922	47922					0.08069431851617992
VSLSRGPLSPL	11	Unmodified	_VSLSRGPLSPL_					0	0	0		ZNHIT2|p.V207L|1|0.56|ENSG00000174276|chr11:65117035-65117035|C/G|missense_variant	ZNHIT2|p.V207L|1|0.56|ENSG00000174276|chr11:65117035-65117035|C/G|missense_variant	ZNHIT2|p.V207L|1|0.56|ENSG00000174276|chr11:65117035-65117035|C/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	375.8921813964844	3	375.892396	1124.65536	-1.0783	-0.00040533	0.51338	0.00019297	-0.56494	-0.00021236	375.8926347838546	24.841	0.13585	24.841	24.777	24.913	0					6	4	2	0	0	0	0.71641	1	7661	7661		26.063	0.9374	1	119040			47326	23177	31422	31549	47923	47923					0.09801676431470696
VSLSRVALKN	10	Unmodified	_VSLSRVALKN_					0	0	0			REV__PTPN13|p.P924S|1|0.32|ENSG00000163629|chr4:86750589-86750589|C/T|missense_variant	REV__PTPN13|p.P924S|1|0.32|ENSG00000163629|chr4:86750589-86750589|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8927001953125	3	362.892507	1085.65569	0.46119	0.00016736	-0.28069	-0.00010186	0.1805	6.55E-05	362.8923768248027	17.962	0.091408	17.962	17.88	17.971	0					6	2	3	0	0	0	0.74091	1	4384	4384		20.03	11.337	1	205970	+		47327	21425	31423	31550	47924	47924					0.11629096151318663
VSLTGTKTE	9	Unmodified	_VSLTGTKTE_					0	0	0		ENST00000424011.6_2_16:66646856-66647075:+|nuORF	ENST00000424011.6_2_16:66646856-66647075:+|nuORF	ENST00000424011.6_2_16:66646856-66647075:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.25469970703125	2	468.25584	934.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.881	1	32.881	32.381	33.381	0								0	0	0	0.3428	1	10659	10659		26.693	5.746	1				47328	9418	31424	31551	47925	47925					0.027257574523787298
VSLVLFPV	8	Unmodified	_VSLVLFPV_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.2734680175781	2	437.275847	872.537141	-3.0728	-0.0013437	-1.7396	-0.00076069	-4.8124	-0.0021044	437.27493969936904	33.079	0.19073	33.079	32.99	33.18	0					10	6	2	0	0	0	0.6282	1	11556	11556		44.531	44.531	1	94600	+		47329	12922	31425	31552	47926	47926					0.09577348913614969
VSLVSKVGKQ	10	Unmodified	_VSLVSKVGKQ_					0	0	0		ENST00000456006.2_1_7:82476458-82476515:-|nuORF;nc|ENSG00000186472|Q9Y6V0-3|PCLO	ENST00000456006.2_1_7:82476458-82476515:-|nuORF	ENST00000456006.2_1_7:82476458-82476515:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.824951171875	2	522.824224	1043.63389	1.5173	0.00079326	-0.6419	-0.0003356	0.87536	0.00045766	522.8239533720593	33.741	0.26371	33.741	33.658	33.922	0					22	10	3	0	0	0	0.65051	1	10993	10993		28.081	0	1	211030			47330	9683	31426	31553	47927	47927					0.11382291402765077
VSLWLLLM	8	Oxidation (M)	_VSLWLLLM(Oxidation (M))_		VSLWLLLM(1)		VSLWLLLM(45)	0	0	1			REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.7901916503906	2	495.788264	989.561975	2.8516	0.0014138	1.0087	0.00050011	3.8603	0.0019139	495.78868967631905	42.466	0.37445	42.466	42.246	42.621	0					17	10	3	0	0	0	0.6282	1	16942	16942		44.531	8.9128	1	282330	+		47331	15123	31427	31554	47928	47928		575			0.0667766072468794
VSLYIFTV	8	Unmodified	_VSLYIFTV_					0	0	0			REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.2685241699219	2	471.270761	940.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.854	1	29.854	29.354	30.354	0								0	0	0	1.7419	1	11099	11099		65.803	0	1		+		47332	20541	31428	31555	47929	47929					0.05432741188383261
VSMDNSNKYTK	11	Unmodified	_VSMDNSNKYTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	643.8052978515625	2	643.805902	1285.59725	0.21897	0.00014098	-1.1001	-0.00070822	-0.88108	-0.00056725	644.306416273371	19.399	0.10367	19.399	19.327	19.431	0					7	3	3	0	0	0	0.24536	1	5001	5001		68.846	24.469	1	90220			47333	3082	31429	31556	47930	47930					-0.03412373276114522
VSMDNSNKYTK	11	Unmodified	_VSMDNSNKYTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	643.8058471679688	2	643.805902	1285.59725	0.54515	0.00035097	-0.79369	-0.00051098	-0.24854	-0.00016001	643.8054405278319	19.701	0.13703	19.701	19.647	19.784	0					8	3	3	0	0	0	1.9631E-08	1	5998	5998		201.61	118.86	1	720070			47334	3082	31429	31556	47931	47931					-0.03412373276114522
VSMDNSNKYTK	11	Unmodified	_VSMDNSNKYTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	643.8052368164062	2	643.805902	1285.59725	1.1029	0.00071005	-1.5293	-0.00098454	-0.42636	-0.00027449	643.8048092748388	19.393	0.077162	19.393	19.336	19.413	0					4	2	2	0	0	0	0.45905	1	5242	5242		47.228	10.781	1	68525			47335	3082	31429	31556	47932	47932					-0.03412373276114522
VSMDNSNKYTK	11	Unmodified	_VSMDNSNKYTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	643.806884765625	2	643.805902	1285.59725	-0.53699	-0.00034572	1.4042	0.00090401	0.86717	0.00055829	643.8068810265329	19.575	0.11344	19.575	19.495	19.609	0					6	2	3	0	0	0	4.2434E-05	1	6213	6213		164.66	91.784	1	296080			47336	3082	31429	31556	47933	47933					-0.03412373276114522
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2529602050781	2	507.252243	1012.48993	1.7799	0.00090284	-0.50898	-0.00025818	1.2709	0.00064466	507.25208077254945	31.242	0.1495	31.242	31.161	31.31	0					11	6	2	0	0	0	0.02953	1	10021	10021		109.48	58.143	1	122980			47337	7363	31430	31557	47934	47934					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.25286865234375	2	507.252243	1012.48993	0.85087	0.0004316	-0.34356	-0.00017427	0.5073	0.00025733	507.25217514569323	31.231	0.25965	31.231	31.15	31.41	0					29	10	4	0	0	0	0.035106	1	10011	10011		104.01	54.572	1	924830			47338	7363	31430	31557	47935	47935					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2522888183594	2	507.252243	1012.48993	0.89256	0.00045275	-1.0316	-0.00052328	-0.13903	-7.0522E-05	507.2519353400434	31.509	0.29998	31.509	31.385	31.685	0					17	7	3	0	0	0	0.012936	1	11451	11451		134.77	52.525	1	652190			47339	7363	31430	31557	47936	47936					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.2523193359375	2	507.252243	1012.48993	0.86873	0.00044066	-1.0509	-0.00053307	-0.18218	-9.2409E-05	507.2518473775435	31.493	0.37506	31.493	31.372	31.747	0					22	9	4	0	0	0	0.0088974	1	11461	11461		143.37	74.587	1	4830000			47340	7363	31430	31557	47937	47937					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.2523498535156	2	507.252243	1012.48993	0.16399	8.3185E-05	-0.65843	-0.00033399	-0.49444	-0.00025081	507.25206992208757	31.492	0.47847	31.492	31.348	31.827	0					29	10	5	0	0	0	0.0076184	1	11868	11868		146.79	80.356	1	4262100			47341	7363	31430	31557	47938	47938					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.25286865234375	2	507.252243	1012.48993	0.36805	0.00018669	-0.35737	-0.00018128	0.010677	5.4162E-06	507.2522711967258	31.28	0.32743	31.28	31.175	31.503	0					22	8	4	0	0	0	0.017421	1	10744	10744		126.24	57.456	1	976940			47342	7363	31430	31557	47939	47939					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.2520446777344	2	507.252243	1012.48993	0.092095	4.6716E-05	-0.67348	-0.00034163	-0.58139	-0.00029491	507.25210580976466	31.305	0.20376	31.305	31.199	31.403	0					11	5	3	0	0	0	0.02429	1	10751	10751		114.89	60.118	1	237750			47343	7363	31430	31557	47940	47940					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.25201416015625	2	507.252243	1012.48993	-0.17233	-8.7417E-05	-0.15791	-8.0098E-05	-0.33024	-0.00016751	507.25231320531526	31.479	0.46642	31.479	31.319	31.786	0					27	9	5	0	0	0	0.0047071	2	11757	11757;11857		159.28	82.502	1	6575900			47344	7363	31430	31557	47941;47942	47941					-0.015812984196941215
VSMDYAISK	9	Unmodified	_VSMDYAISK_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.2519836425781	2	507.252243	1012.48993	1.2874	0.00065303	-1.4347	-0.00072773	-0.14726	-7.47E-05	507.2514946350551	31.462	0.2655	31.462	31.305	31.571	0					17	5	4	0	0	0	0.0076184	1	11773	11773		146.79	75.49	1	2512600			47345	7363	31430	31557	47943	47943					-0.015812984196941215
VSMDYAISK	9	Oxidation (M)	_VSM(Oxidation (M))DYAISK_		VSM(1)DYAISK		VSM(69)DYAISK	0	0	1		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2503051757812	2	515.2497	1028.48485	1.6333	0.00084155	0.75707	0.00039008	2.3904	0.0012316	515.2501469766501	24.333	0.37661	24.333	24.101	24.478	0					15	8	2	0	0	0	0.14578	1	8106	8106		68.846	19.405	1	311330			47346	7363	31430	31558	47944	47944		296			-0.028256022823143212
VSMDYAISK	9	Oxidation (M)	_VSM(Oxidation (M))DYAISK_		VSM(1)DYAISK		VSM(100)DYAISK	0	0	1		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2501220703125	2	515.2497	1028.48485	0.78065	0.00040223	0.65798	0.00033903	1.4386	0.00074126	515.2499144758642	24.318	0.36522	24.318	24.062	24.427	0					13	7	3	0	0	0	0.037712	1	8415	8415		101.46	43.23	1	303140			47347	7363	31430	31558	47945	47945		296			-0.028256022823143212
VSMELYGKK	9	Oxidation (M)	_VSM(Oxidation (M))ELYGKK_		VSM(1)ELYGKK		VSM(79)ELYGKK	0	0	1			REV__ENSG00000048649|ENST00000308488|RSF1	REV__ENSG00000048649|ENST00000308488|RSF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.780029296875	2	535.781167	1069.54778	-1.378	-0.0007383	-0.93522	-0.00050108	-2.3132	-0.0012394	535.7806815620838	23.072	0.2323	23.072	23.019	23.251	0					12	5	3	0	0	0	0.099922	1	6990	6990		79.451	23.947	1	1044000	+		47348	13021	31431	31559	47946	47946		503			0.01578963505721731
VSMGHSISK	9	Unmodified	_VSMGHSISK_					0	0	0		ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant;ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant;ENSG00000186017|ENST00000452939|ZNF566	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.244384765625	2	473.244752	944.474951	-1.5396	-0.00072858	0.77013	0.00036446	-0.76942	-0.00036412	473.2452023912147	18.469	0.090324	18.469	18.413	18.503	0					8	3	3	0	0	0	0.02429	1	4833	4833		114.89	51.588	1	482150			47349	7121	31432	31560	47947	47947					0.0004925450297150746
VSMGHSISK	9	Unmodified	_VSMGHSISK_					0	0	0		ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant;ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant;ENSG00000186017|ENST00000452939|ZNF566	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2444152832031	2	473.244752	944.474951	0.59649	0.00028229	-1.3021	-0.00061623	-0.70565	-0.00033395	473.24414168671274	18.702	0.11753	18.702	18.644	18.761	0					4	2	2	0	0	0	0.082776	1	5796	5796		83.647	14.86	1	3752000			47350	7121	31432	31560	47948	47948					0.0004925450297150746
VSMGHSISK	9	Unmodified	_VSMGHSISK_					0	0	0		ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant;ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant;ENSG00000186017|ENST00000452939|ZNF566	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2442626953125	2	473.244752	944.474951	-0.50777	-0.0002403	-0.24982	-0.00011823	-0.75759	-0.00035853	473.2446718077452	18.542	0.11501	18.542	18.476	18.591	0					6	3	2	0	0	0	0.032383	1	4868	4868		106.68	45.711	1	330510			47351	7121	31432	31560	47949	47949					0.0004925450297150746
VSMGHSISK	9	Unmodified	_VSMGHSISK_					0	0	0		ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant;ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant;ENSG00000186017|ENST00000452939|ZNF566	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.24432373046875	2	473.244752	944.474951	-2.5087	-0.0011872	1.9941	0.00094367	-0.51469	-0.00024358	473.24557265707705	18.535	0.076517	18.535	18.501	18.578	0					4	2	2	0	0	0	0.14578	1	4860	4860		68.846	24.315	1	200290			47352	7121	31432	31560	47950	47950					0.0004925450297150746
VSMGHSISK	9	Unmodified	_VSMGHSISK_					0	0	0		ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant;ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant;ENSG00000186017|ENST00000452939|ZNF566	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	ZNF566|p.P52Q|1|0.3|ENSG00000186017|chr19:36472988-36472988|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.244384765625	2	473.244752	944.474951	0.65062	0.0003079	-1.4288	-0.00067619	-0.77821	-0.00036829	473.24404588702635	18.71	0.16319	18.71	18.605	18.768	0					5	3	2	0	0	0	0.070005	1	5661	5661		88.177	8.7259	1	3257400			47353	7121	31432	31560	47951	47951					0.0004925450297150746
VSMLNVYLK	9	Unmodified	_VSMLNVYLK_					0	0	0		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.802978515625	2	533.801903	1065.58925	0.47607	0.00025412	0.82292	0.00043928	1.299	0.0006934	533.8022823044075	43.295	0.089844	43.295	43.225	43.315	0					9	5	2	0	0	0	0.18416	1	13674	13674		63.534	19.157	1	110850			47354	2695	31433	31561	47952	47952					0.059081442650494864
VSMLNVYLK	9	Unmodified	_VSMLNVYLK_					0	0	0		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.8025512695312	2	533.801903	1065.58925	0.15036	8.0263E-05	0.48735	0.00026015	0.63771	0.00034041	533.8022209041661	43.573	0.29482	43.573	43.484	43.778	0					45	16	4	0	0	0	0.026538	1	16410	16410		112.41	62.969	1	870560			47355	2695	31433	31561	47953	47953					0.059081442650494864
VSMLNVYLK	9	Unmodified	_VSMLNVYLK_					0	0	0		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.8027954101562	2	533.801903	1065.58925	0.21063	0.00011243	0.15769	8.4175E-05	0.36832	0.00019661	533.8020734652324	43.355	0.11589	43.355	43.305	43.421	0					14	7	3	0	0	0	0.085655	1	14187	14187		82.75	41.972	1	148940			47356	2695	31433	31561	47954	47954					0.059081442650494864
VSMLNVYLK	9	Unmodified	_VSMLNVYLK_					0	0	0		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8025512695312	2	533.801903	1065.58925	0.29004	0.00015482	0.10827	5.7793E-05	0.3983	0.00021262	533.8020428120406	43.512	0.30961	43.512	43.448	43.758	0					44	16	4	0	0	0	0.15163	1	17005	17005		67.494	21.542	1	1497300			47357	2695	31433	31561	47955	47955					0.059081442650494864
VSMLNVYLK	9	Oxidation (M)	_VSM(Oxidation (M))LNVYLK_		VSM(1)LNVYLK		VSM(110)LNVYLK	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.799560546875	2	541.79936	1081.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.105	1	36.105	35.605	36.605	0								0	0	0	0.0124	1	13591	13591		107.01	29.69	1				47358	2695	31433	31562	47956	47956		118			0.04663840402417918
VSMLNVYLK	9	Oxidation (M)	_VSM(Oxidation (M))LNVYLK_		VSM(1)LNVYLK		VSM(73)LNVYLK	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.798828125	2	541.79936	1081.58417	0.31344	0.00016982	-0.45809	-0.00024819	-0.14465	-7.8371E-05	541.7991863365214	36.058	0.43438	36.058	35.808	36.242	0					24	13	2	0	0	0	0.12834	1	14005	14005		72.879	19.943	1	381070			47359	2695	31433	31562	47957	47957		118			0.04663840402417918
VSMLNVYLK	9	Oxidation (M)	_VSM(Oxidation (M))LNVYLK_		VSM(1)LNVYLK		VSM(46)LNVYLK	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.7987060546875	2	541.79936	1081.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.844	1	35.844	35.344	36.344	0								0	0	0	0.23445	1	12795	12795		45.972	13.16	1				47360	2695	31433	31562	47958	47958		118			0.04663840402417918
VSMLNVYLK	9	Oxidation (M)	_VSM(Oxidation (M))LNVYLK_		VSM(1)LNVYLK		VSM(120)LNVYLK	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7996215820312	2	541.79936	1081.58417	3.5474	0.001922	-3.4883	-0.00189	0.059113	3.2028E-05	541.7971715427174	36.067	0.46448	36.067	35.752	36.217	0					13	9	2	0	0	0	0.01873	1	13965	13965		124.08	36.384	1	558670			47361	2695	31433	31562	47959	47959		118			0.04663840402417918
VSMLPSELLRR	11	Unmodified	_VSMLPSELLRR_					0	0	0		tr|U7T6I2|U7T6I2_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00249PE=3SV=1	tr|U7T6I2|U7T6I2_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00249PE=3SV=1	tr|U7T6I2|U7T6I2_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00249PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.25274658203125	3	434.251707	1299.73329	2.6141	0.0011352	-0.32958	-0.00014312	2.2846	0.00099208	434.25164294242916	20.52	0.31628	20.52	20.46	20.776	0					12	6	4	0	0	0	0.54316	1	6566	6566		41.08	5.928	1	1014400			47362	23036	31434	31563	47960	47960					0.09541366025177922
VSMLVTQGL	9	Unmodified	_VSMLVTQGL_					0	0	0		nc|ENSG00000145247|Q56VL3-2|OCIAD2;ENSG00000145247|ENST00000508632|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.2630615234375	2	474.265153	946.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.719	1	41.719	41.219	42.219	0								0	0	0	0.35377	1	13344	13344		24.519	0.31644	1				47363	11567	31435	31564	47961	47961					0.040355958225973154
VSMVALKFMT	10	Unmodified	_VSMVALKFMT_					0	0	0		SV2B|p.P298T|1|0.09|ENSG00000185518|chr15:91258528-91258528|C/A|missense_variant	SV2B|p.P298T|1|0.09|ENSG00000185518|chr15:91258528-91258528|C/A|missense_variant	SV2B|p.P298T|1|0.09|ENSG00000185518|chr15:91258528-91258528|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.8042602539062	2	563.803588	1125.59262	1.8825	0.0010613	-0.93768	-0.00052867	0.94479	0.00053268	563.8028643964832	28.373	0.60499	28.373	28.224	28.829	0					30	12	4	0	0	0	0.55603	1	10377	10377		39.253	0.44669	1	2235500			47364	22501	31436	31565	47962	47962					0.03485071047407473
VSMVDKAW	8	Unmodified	_VSMVDKAW_					0	0	0			REV__ENST00000610085.1_1_7:148394554-148394812:-|nuORF	REV__ENST00000610085.1_1_7:148394554-148394812:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.2376403808594	2	468.236396	934.458238	0.30207	0.00014144	1.8408	0.00086192	2.1428	0.0010034	468.2374924917902	24.414	0.193	24.414	24.309	24.502	0					10	4	3	0	0	0	0.46905	1	8230	8230		63.306	3.188	1	375230	+		47365	20636	31437	31566	47963	47963					-0.011612463829919761
VSNAAHHLLI	10	Unmodified	_VSNAAHHLLI_					0	0	0			REV__ENSG00000112294|ENST00000357578|ALDH5A1	REV__ENSG00000112294|ENST00000357578|ALDH5A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.8741760253906	3	358.873336	1073.59818	0.12491	4.4826E-05	1.9737	0.00070832	2.0986	0.00075315	358.8742455571257	24.014	0.14463	24.014	23.919	24.064	0					9	4	3	0	0	0	0.59277	1	7019	7019		35.152	17.319	1	160870	+		47366	13999	31438	31567	47964	47964					0.0643225394574074
VSNFINGK	8	Unmodified	_VSNFINGK_					0	0	0			REV__nc|ENSG00000162779|Q5T1B0-2|AXDND1	REV__nc|ENSG00000162779|Q5T1B0-2|AXDND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.73992919921875	2	439.74016	877.465767	0.56659	0.00024915	-0.91565	-0.00040265	-0.34905	-0.00015349	439.7397444614032	24.211	0.10493	24.211	24.131	24.236	0					4	2	2	0	0	0	0.63077	1	8115	8115		44.117	3.5442	1	240820	+		47367	12265	31439	31568	47965	47965					0.02213229208962275
VSNFINGK	8	Unmodified	_VSNFINGK_					0	0	0			REV__nc|ENSG00000162779|Q5T1B0-2|AXDND1	REV__nc|ENSG00000162779|Q5T1B0-2|AXDND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	439.7398376464844	2	439.74016	877.465767	-0.55953	-0.00024605	-0.033098	-1.4554E-05	-0.59263	-0.0002606	439.74009632216575	24.137	0.16761	24.137	24.028	24.196	0					8	3	3	0	0	0	0.43813	1	8272	8272		66.429	3.123	1	267620	+		47368	12265	31439	31568	47966	47966					0.02213229208962275
VSNLLLKTY	9	Unmodified	_VSNLLLKTY_					0	0	0			REV__tr|U7SSL7|U7SSL7_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01495PE=3SV=1	REV__tr|U7SSL7|U7SSL7_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01495PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.8135986328125	2	525.813325	1049.6121	0.51465	0.00027061	0.22933	0.00012058	0.74398	0.00039119	525.8133782615452	34.29	0.27581	34.29	34.224	34.499	0					29	12	3	0	0	0	0.30841	1	11550	11550		42.396	8.2236	1	843750	+		47369	21876	31440	31569	47967	47967					0.089274866542155
VSNSWPQVI	9	Unmodified	_VSNSWPQVI_					0	0	0		AluSz6_dup5069|chr2:47377230-47377536:-|1.0621030440935346|0.2745788286115291|1.95|483.0|17|1|anti-sense;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|17|1|anti-sense;ENST00000601724.5_1_19:8478196-8486699:+|nuORF;ENST00000511909.5_1_4:122053805-122071269:-|nuORF;ENSG00000106436|ENST00000223167|MYL10	AluSz6_dup5069|chr2:47377230-47377536:-|1.0621030440935346|0.2745788286115291|1.95|483.0|17|1|anti-sense	AluSz6_dup5069|chr2:47377230-47377536:-|1.0621030440935346|0.2745788286115291|1.95|483.0|17|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.8502197265625	3	343.850308	1028.5291	0.52208	0.00017952	-0.57558	-0.00019792	-0.053505	-1.8398E-05	343.85003328246984	25.578	0.16754	25.578	25.519	25.687	0					5	3	2	0	0	0	0.42902	1	9111	9111		39.253	0.44669	1	111740			47370	139	31441	31570	47968	47968					0.01597169926208153
VSNVDLDH	8	Unmodified	_VSNVDLDH_					0	0	0		ENST00000486257.5_1_3:114027142-114027259:+|nuORF	ENST00000486257.5_1_3:114027142-114027259:+|nuORF	ENST00000486257.5_1_3:114027142-114027259:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.7168273925781	2	449.716882	897.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.983	1	18.983	18.483	19.483	0								0	0	0	1.7419	1	4825	4825		38.806	8.3025	1				47371	10018	31442	31571	47969	47969					-0.033602554129970486
VSPAKLFPM	9	Unmodified	_VSPAKLFPM_					0	0	0		ENST00000496366.1_1_1:46153874-46159045:+|nuORF	ENST00000496366.1_1_1:46153874-46159045:+|nuORF	ENST00000496366.1_1_1:46153874-46159045:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	495.2975769042969	2	495.278063	988.541574	0.085781	4.2485E-05	2.7625	0.0013682	2.8483	0.0014107	495.2798809241588	33.005	0.11073	33.005	32.963	33.074	0					5	3	2	0	0	0	0.47038	1	11564	11564		35.618	4.0885	1	55318			47372	10115	31443	31572	47970	47970					0.0468449006488072
VSPDAALK	8	Unmodified	_VSPDAALK_					0	0	0			REV__nc|ENSG00000137944|Q6YP21-2|KYAT3	REV__nc|ENSG00000137944|Q6YP21-2|KYAT3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.7294006347656	2	400.729261	799.443968	0.82569	0.00033088	-0.78524	-0.00031467	0.040451	1.621E-05	400.7289275977841	26.309	0.45907	26.309	26.067	26.526	0					15	9	2	0	0	0	0.34985	1	9395	9395		76.847	0	1	679150	+		47373	14947	31444	31573	47971	47971					0.036224244603772604
VSPDAKTSL	9	Unmodified	_VSPDAKTSL_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.25048828125	2	459.250557	916.486562	-0.081162	-3.7274E-05	0.36398	0.00016716	0.28282	0.00012989	459.2503686902705	23.582	0.21524	23.582	23.486	23.701	0					15	5	4	0	0	0	0.34452	1	7211	7211		46.457	7.2039	1	683130			47374	1636	31445	31574	47972	47972					0.024977747979505693
VSPDAKTSL	9	Unmodified	_VSPDAKTSL_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	459.2500305175781	2	459.250557	916.486562	0.037108	1.7042E-05	-0.50317	-0.00023108	-0.46606	-0.00021404	459.25024803904245	23.565	0.2105	23.565	23.474	23.685	0					14	5	3	0	0	0	0.44593	1	7205	7205		37.812	3.639	1	1291400			47375	1636	31445	31574	47973	47973					0.024977747979505693
VSPDAKTSL	9	Unmodified	_VSPDAKTSL_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.25048828125	2	459.250557	916.486562	-0.44556	-0.00020462	0.63339	0.00029089	0.18784	8.6265E-05	459.2504995026798	23.739	0.4624	23.739	23.634	24.096	0					27	9	5	0	0	0	0.099758	1	8080	8080		79.489	24.767	1	6539700			47376	1636	31445	31574	47974	47974					0.024977747979505693
VSPELHEQL	9	Unmodified	_VSPELHEQL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.274169921875	2	526.274564	1050.53457	-1.2251	-0.00064473	0.6232	0.00032798	-0.60189	-0.00031676	526.2747276249481	40.641	0.17111	40.641	40.57	40.741	0					14	9	2	0	0	0	0.19605	1	14424	14424		62.107	0	1	90739			47377	8044;11109	31446	31575	47975	47975					0.011328487179980584
VSPGERATL	9	Unmodified	_VSPGERATL_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2558288574219	2	465.256174	928.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.191	1	24.191	23.691	24.691	0								0	0	0	0.11963	1	8111	8111		66.962	6.8437	1				47378	11770	31447	31576	47976	47976					0.03068596892092046
VSPGGGAL	8	Unmodified	_VSPGGGAL_					0	0	0		ENST00000591688.5_1_19:13875372-13879601:+|nuORF	ENST00000591688.5_1_19:13875372-13879601:+|nuORF	ENST00000591688.5_1_19:13875372-13879601:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	329.1834716796875	2	329.181946	656.34934	0.37199	0.00012245	4.2429	0.0013967	4.6148	0.0015191	329.1831887887113	26.887	0.16802	26.887	26.819	26.987	0					8	5	2	0	0	0	0.7914	1	8218	8218		14.664	0.88877	1	40247			47379	10966	31448	31577	47977	47977					0.00741910709041349
VSPGQTARI	9	Unmodified	_VSPGQTARI_					0	0	0		nc|ENSG00000211659|P01717|IGLV3-25;nc|ENSG00000211658|P01718|IGLV3-27;nc|ENSG00000211669|A0A075B6K4|IGLV3-10;nc|ENSG00000211661|A0A075B6J6|IGLV3-22	nc|ENSG00000211659|P01717|IGLV3-25	nc|ENSG00000211659|P01717|IGLV3-25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2559814453125	2	464.764166	927.513779	0.68417	0.00031798	-2.4224	-0.0011258	-1.7382	-0.00080787	464.7634947106983	16.571	0.80348	16.571	16.413	17.217	0					43	16	5	0	0	0	0.30841	1	4987	4987		49.536	8.7579	1	9970400			47380	11733	31449	31578	47978	47978					0.047123031289856954
VSPGRPEK	8	Unmodified	_VSPGRPEK_					0	0	0			REV__ADAMTS15|p.D814E|1|0.36|ENSG00000166106|chr11:130473410-130473410|C/A|missense_variant	REV__ADAMTS15|p.D814E|1|0.36|ENSG00000166106|chr11:130473410-130473410|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2455139160156	2	435.245609	868.476666	0.67561	0.00029406	-1.0589	-0.00046086	-0.38324	-0.0001668	435.2453350721417	21.968	0.17774	21.968	21.867	22.045	0					6	4	2	0	0	0	0.74405	1	7089	7089		27.882	4.8398	1	385320	+		47381	12070	31450	31579	47979	47979					0.037166315832337204
VSPHAGSSL	9	Unmodified	_VSPHAGSSL_					0	0	0			REV__ENST00000528300.5_1_14:50459574-50472442:-|nuORF	REV__ENST00000528300.5_1_14:50459574-50472442:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.72186279296875	2	427.721967	853.429381	-0.98023	-0.00041927	0.22301	9.5385E-05	-0.75723	-0.00032388	427.72207361982476	23.857	0.11485	23.857	23.797	23.912	0					7	4	2	0	0	0	0.25109	1	7229	7229		55.504	0	1	82706	+		47382	20016	31451	31580	47980	47980					-0.0031964768775196717
VSPHILGTAL	10	Unmodified	_VSPHILGTAL_					0	0	0			REV__ENSG00000111701|ENST00000229304|APOBEC1	REV__ENSG00000111701|ENST00000229304|APOBEC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.942	1	22.942	22.442	23.442	0								0	0	0	0.4201	1	7705	7705		27.047	11.406	1		+		47383	13978	31452	31581	47981	47981					0.07810333339955378
VSPIETLRR	9	Unmodified	_VSPIETLRR_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.8197631835938	2	535.819473	1069.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.015	1	14.015	13.515	14.515	0								0	0	0	0.1633	1	3392	3392		56.721	1.9447	1		+		47384	12522	31453	31582	47982	47982					0.09236523117237994
VSPIRVNAL	9	Unmodified	_VSPIRVNAL_					0	0	0		ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF;ADAMTS9|p.C1222Lfs*15|1|0.3|ENSG00000163638|chr3:64604004-64604004|C/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ADAMTS9|p.S1884Ffs*2|1|0.35|ENSG00000163638|chr3:64533233-64533233|G/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant	ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.79766845703125	2	484.798009	967.581465	-0.21929	-0.00010631	-0.26583	-0.00012887	-0.48511	-0.00023518	484.7978489746615	36.003	0.35447	36.003	35.818	36.172	0					16	9	2	0	0	0	0.46194	1	13524	13524		36.447	0	1	628900			47385	61	31454	31583	47983	47983					0.09637753059791976
VSPIRVNAL	9	Unmodified	_VSPIRVNAL_					0	0	0		ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF;ADAMTS9|p.C1222Lfs*15|1|0.3|ENSG00000163638|chr3:64604004-64604004|C/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ADAMTS9|p.S1884Ffs*2|1|0.35|ENSG00000163638|chr3:64533233-64533233|G/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant	ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7978210449219	2	484.798009	967.581465	0.6602	0.00032007	-0.76758	-0.00037212	-0.10738	-5.2057E-05	484.7977877506231	35.97	0.43378	35.97	35.744	36.178	0					34	13	4	0	0	0	0.40353	1	13967	13967		41.427	8.6142	1	860350			47386	61	31454	31583	47984	47984					0.09637753059791976
VSPPAAAL	8	Unmodified	_VSPPAAAL_					0	0	0		ENST00000564098.5_1_16:1794388-1794685:+|nuORF	ENST00000564098.5_1_16:1794388-1794685:+|nuORF	ENST00000564098.5_1_16:1794388-1794685:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.2128601074219	2	363.213246	724.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.212	1	13.212	12.712	13.712	0								0	0	0	1.7419	1	2702	2702		29.842	1.5873	1				47387	10738	31455	31584	47985	47985					0.03871056777222748
VSPPLPKLLA	10	Unmodified	_VSPPLPKLLA_					0	0	0			REV__ENST00000530149.1_1_11:211118-211532:+|nuORF	REV__ENST00000530149.1_1_11:211118-211532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.5583190917969	3	345.558466	1033.65357	-0.034468	-1.1911E-05	0.0020247	6.9964E-07	-0.032443	-1.1211E-05	345.5584031209925	37.952	0.15292	37.952	37.852	38.005	0					5	3	2	0	0	0	0.73511	1	14890	14890		16.007	1.8697	1	234440	+		47388	20040	31456	31585	47986	47986					0.13808667413536568
VSPQKKSSVT	10	Unmodified	_VSPQKKSSVT_					0	0	0			REV__ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	REV__ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.8037109375	2	530.803488	1059.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.332	1	27.332	26.832	27.832	0								0	0	0	0.4162	1	8697	8697		25.574	0.12388	1		+		47389	12159	31457	31586	47987	47987					0.06501110643444008
VSPRATPAM	9	Unmodified	_VSPRATPAM_					0	0	0			REV__MEGF11|p.G421Afs*41|1|0.41|ENSG00000157890|chr15:65957572-65957572|C/-|frameshift_variant	REV__MEGF11|p.G421Afs*41|1|0.41|ENSG00000157890|chr15:65957572-65957572|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	465.2471618652344	2	465.247295	928.480036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.291	1	20.291	19.791	20.791	0								0	0	0	0.34845	1	5405	5405		25.574	1.3713	1		+		47390	20876	31458	31587	47988	47988					0.012935583655803384
VSPRGGIIN	9	Unmodified	_VSPRGGIIN_					0	0	0			REV__ENSG00000121440|ENST00000263666|PDZRN3	REV__ENSG00000121440|ENST00000263666|PDZRN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.76617431640625	2	456.766709	911.518865	-0.61103	-0.0002791	0.20675	9.4436E-05	-0.40428	-0.00018466	456.7665526526196	12.037	0.091274	12.037	11.969	12.061	0					5	3	2	0	0	0	0.51817	1	2452	2452		30.504	0	1	34079	+		47391	14312	31459	31588	47989	47989					0.05956606991617264
VSPRSVEI	8	Unmodified	_VSPRSVEI_					0	0	0			REV__sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	REV__sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.75311279296875	2	443.753267	885.491981	0.53063	0.00023547	-1.8855	-0.00083669	-1.3548	-0.00060122	443.75324399989944	25.621	1.0943	25.621	25.04	26.134	0					46	20	4	0	0	0	0.51384	1	9114	9114		58.782	5.4305	1	1589900	+		47392	21555	31460	31589	47990	47990					0.04465498380432109
VSPSRACSAVP	11	Unmodified	_VSPSRACSAVP_					0	0	0		ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.5185546875	3	358.518453	1072.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.654	1	19.654	19.154	20.154	0								0	0	0	0.45674	1	5362	5362		24.232	2.5461	1				47393	9861	31461	31590	47991	47991					0.00016311077456521161
VSPVESKYT	9	Unmodified	_VSPVESKYT_					0	0	0		ENST00000421771.1_1_21:27843232-27843484:+|nuORF	ENST00000421771.1_1_21:27843232-27843484:+|nuORF	ENST00000421771.1_1_21:27843232-27843484:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2642822265625	2	505.263665	1008.51278	3.6947	0.0018668	-1.9657	-0.0009932	1.729	0.0008736	505.262348636843	24.537	0.22417	24.537	24.442	24.666	0					9	7	2	0	0	0	0.55379	1	7519	7519		26.693	1.2427	1	48034			47394	9403	31462	31591	47992	47992					0.008860439694331035
VSPVFTPG	8	Unmodified	_VSPVFTPG_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	402.21630859375	2	402.218529	802.422505	0.66635	0.00026802	-3.7657	-0.0015146	-3.0994	-0.0012466	402.2164051172115	15.389	0.26821	15.389	15.252	15.52	0					13	6	3	0	0	0	0.64096	1	3954	3954		42.474	7.2737	1	183960	+		47395	21244	31463	31592	47993	47993					0.013390394316729726
VSPVSRQSI	9	Unmodified	_VSPVSRQSI_					0	0	0		nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	nc|ENSG00000177106|Q9H6S3-2|EPS8L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.7770080566406	2	486.777274	971.539994	-0.31645	-0.00015404	-0.10329	-5.028E-05	-0.41974	-0.00020432	486.7772557957237	25.235	0.24233	25.235	25.091	25.333	0					11	5	3	0	0	0	0.13726	1	8606	8606		70.816	16.04	1	523780			47396	6647	31464	31593	47994	47994					0.05308572300486958
VSPVVRVAV	9	Unmodified	_VSPVVRVAV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.2945251464844	2	463.295102	924.575651	-0.70739	-0.00032773	-0.33015	-0.00015296	-1.0375	-0.00048068	463.29492012625946	34.102	0.4655	34.102	33.947	34.413	0					23	12	3	0	0	0	0.53083	1	12694	12694		29.15	4.9468	1	481260			47397	6014	31465	31594	47995	47995					0.11034654548143408
VSPYGVLAV	9	Unmodified	_VSPYGVLAV_					0	0	0			REV__tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1	REV__tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7621765136719	2	452.760561	903.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.108	1	27.108	26.608	27.608	0								0	0	0	0.28164	1	9784	9784		38.806	6.8513	1		+		47398	21767	31466	31595	47996	47996					0.0509557052856735
VSQEERLI	8	Unmodified	_VSQEERLI_					0	0	0		nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-6|AKAP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2685241699219	2	487.269281	972.52401	-0.70015	-0.00034116	-0.7134	-0.00034762	-1.4136	-0.00068878	487.2683924158694	13.372	0.24348	13.372	13.176	13.419	0					8	5	2	0	0	0	0.41701	1	3248	3248		68.787	6.6794	1	168540			47399	11515	31467	31596	47997	47997					0.03664866063570571
VSQFKSPAK	9	Unmodified	_VSQFKSPAK_					0	0	0			REV__nc|ENSG00000170579|O14490-6|DLGAP1	REV__nc|ENSG00000170579|O14490-6|DLGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2837219238281	2	496.282192	990.549831	2.8723	0.0014255	-0.40892	-0.00020294	2.4634	0.0012225	496.28204938797285	20.068	0.36731	20.068	19.961	20.328	0					19	7	4	0	0	0	0.061298	1	6300	6300		91.265	3.5688	1	2009800	+		47400	21117	31468	31597	47998	47998					0.05417760305851971
VSQGQLVVM	9	Unmodified	_VSQGQLVVM_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7622375488281	2	480.762778	959.511002	-1.3671	-0.00065727	0.42105	0.00020243	-0.94608	-0.00045484	480.76312374641344	34.699	0.38305	34.699	34.612	34.996	0					40	17	4	0	0	0	0.22377	1	11694	11694		58.782	0	1	987360			47401	5135	31469	31598	47999	47999					0.029627116798337738
VSQGTVGVLV	10	Unmodified	_VSQGTVGVLV_					0	0	0			REV__nc|ENSG00000166762|Q96P56-2|CATSPER2	REV__nc|ENSG00000166762|Q96P56-2|CATSPER2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7817687988281	2	479.782025	957.549496	-0.21894	-0.00010504	-1.5238	-0.00073107	-1.7427	-0.00083612	479.7815311268049	25.983	0.19358	25.983	25.832	26.026	0					6	4	2	0	0	0	0.65213	1	8097	8097		27.882	6.9353	1	86349	+		47402	16141	31470	31599	48000	48000					0.0690234058599799
VSQHLLFHL	9	Unmodified	_VSQHLLFHL_					0	0	0		LY75|p.R74L|1|0.28|ENSG00000054219|chr2:159898933-159898933|C/A|missense_variant	LY75|p.R74L|1|0.28|ENSG00000054219|chr2:159898933-159898933|C/A|missense_variant	LY75|p.R74L|1|0.28|ENSG00000054219|chr2:159898933-159898933|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.308837890625	2	547.311284	1092.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.708	1	10.708	10.208	11.208	0								0	0	0	0.40728	1	2086	2086		7.6903	0.49693	1				47403	11341	31471	31600	48001	48001					0.06541441951117122
VSQKRINTE	9	Unmodified	_VSQKRINTE_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.7992553710938	2	537.798737	1073.58292	0.017119	9.2066E-06	0.59331	0.00031908	0.61043	0.00032829	537.7993318208024	12.325	0.054232	12.325	12.291	12.345	0					5	3	2	0	0	0	0.19952	1	2429	2429		61.691	8.7546	1	116200	+		47404	12978	31472	31601	48002	48002					0.04907342357887501
VSQLQLSQ	8	Unmodified	_VSQLQLSQ_					0	0	0			REV__ENST00000258341.4_1_1:183094003-183094580:+|nuORF	REV__ENST00000258341.4_1_1:183094003-183094580:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.75030517578125	2	451.750724	901.486896	-0.10395	-4.696E-05	-0.42834	-0.0001935	-0.53229	-0.00024046	451.75040756365496	20.181	0.1023	20.181	20.087	20.189	0					4	2	2	0	0	0	0.34592	1	5613	5613		77.318	2.2743	1	117350	+		47405	17995	31473	31602	48003	48003					0.03221194517800541
VSQQLSSL	8	Unmodified	_VSQQLSSL_					0	0	0		CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.236328125	2	431.23745	860.460347	-0.4643	-0.00020022	-3.8132	-0.0016444	-4.2775	-0.0018446	431.235780916177	26.911	0.36396	26.911	26.756	27.12	0					13	7	2	0	0	0	0.43813	1	9603	9603		66.429	0	1	343970			47406	452	31474	31603	48004	48004					0.024535056264767263
VSQSHSKTLW	10	Unmodified	_VSQSHSKTLW_					0	0	0		ENSG00000268480|ENST00000691075|NFILZ	ENSG00000268480|ENST00000691075|NFILZ	ENSG00000268480|ENST00000691075|NFILZ	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.8085327148438	2	586.806562	1171.59857	3.1994	0.0018774	0.77814	0.00045662	3.9775	0.002334	586.807149800885	48.849	0.26309	48.849	48.762	49.025	0					21	14	2	0	0	0	0.58189	1	19375	19375		36.447	0	1	107900			47407	8080	31475	31604	48005	48005					0.019636288749325104
VSQSPSPL	8	Unmodified	_VSQSPSPL_					0	0	0		ENST00000471413.1_1_1:156212796-156212871:+|nuORF	ENST00000471413.1_1_1:156212796-156212871:+|nuORF	ENST00000471413.1_1_1:156212796-156212871:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7190856933594	2	407.718893	813.423233	0.64128	0.00026146	-0.62058	-0.00025302	0.0207	8.44E-06	407.71862876696594	28.71	0.4198	28.71	28.537	28.957	0					16	10	2	0	0	0	0.27635	1	10166	10166		90.37	2.6155	1	409260			47408	9852	31476	31605	48006	48006					0.009058340807087006
VSQSQQVL	8	Unmodified	_VSQSQQVL_					0	0	0			REV__nc|ENSG00000197603|Q9H799|CPLANE1	REV__nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7426452636719	2	444.742899	887.471246	0.55201	0.0002455	1.1541	0.00051327	1.7061	0.00075877	444.74348734874445	24.999	0.36015	24.999	24.746	25.106	0					17	7	3	0	0	0	0.48092	1	8830	8830		62.107	0.41614	1	716070	+		47409	17347	31477	31606	48007	48007					0.023009080007682314
VSQTLDIHKR	10	Unmodified	_VSQTLDIHKR_					0	0	0		TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.21|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1	TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.5629577636719	3	399.56305	1195.66732	0.93079	0.00037191	-1.4008	-0.00055972	-0.47005	-0.00018781	399.56259388148663	18.212	0.44761	18.212	18.037	18.485	0					18	10	3	0	0	0	0.71467	1	5300	5300		20.03	0	1	736280			47410	2288	31478	31607	48008	48008					0.0773129317465191
VSQTLNKVA	9	Unmodified	_VSQTLNKVA_					0	0	0		WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512448.1_1_4:39201144-39207357:+|nuORF	WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant	WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.27935791015625	2	480.279649	958.544745	-0.18179	-8.7308E-05	-0.50216	-0.00024118	-0.68395	-0.00032849	480.27938623657235	30.127	0.64722	30.127	29.839	30.487	0					55	16	4	0	0	0	0.4966	1	10946	10946		32.812	0	1	3955400			47411	5233	31479	31608	48009	48009					0.06381456443239131
VSQVAPPPAL	10	Unmodified	_VSQVAPPPAL_					0	0	0			REV__ENST00000262158.6_1_18:46476255-46476423:-|nuORF	REV__ENST00000262158.6_1_18:46476255-46476423:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7846374511719	2	489.784567	977.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.309	1	22.309	21.809	22.809	0								0	0	0	0.26105	1	6623	6623		56.721	0	1		+		47412	18026	31480	31609	48010	48010					0.06490644448604144
VSQVENLL	8	Unmodified	_VSQVENLL_					0	0	0		ENST00000319080.7_12:122611886-122614151:+|nuORF	ENST00000319080.7_12:122611886-122614151:+|nuORF	ENST00000319080.7_12:122611886-122614151:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.25299072265625	2	451.2531	900.491647	-2.6113	-0.0011784	-0.34204	-0.00015434	-2.9533	-0.0013327	451.25395510914154	33.363	0.27967	33.363	33.171	33.451	0					17	8	3	0	0	0	0.6088	1	11690	11690		47.657	3.2801	1	141580			47413	8604	31481	31610	48011	48011					0.03742078660570769
VSQVGKEL	8	Unmodified	_VSQVGKEL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	430.24749755859375	2	430.247818	858.481082	-0.2464	-0.00010601	-0.25195	-0.0001084	-0.49835	-0.00021441	430.2477029022905	23.331	0.22815	23.331	23.249	23.477	0					18	6	4	0	0	0	0.23138	1	6724	6724		132.76	15.854	1	572620			47414	6070	31482	31611	48012	48012					0.04618096006140604
VSQVGKEL	8	Unmodified	_VSQVGKEL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.2476501464844	2	430.247818	858.481082	-0.54209	-0.00023323	0.20614	8.8691E-05	-0.33595	-0.00014454	430.2478912067266	23.641	0.27744	23.641	23.554	23.832	0					23	6	4	0	0	0	0.10774	1	7862	7862		158.07	14.968	1	4040000			47415	6070	31482	31611	48013	48013					0.04618096006140604
VSQVGKEL	8	Unmodified	_VSQVGKEL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.24755859375	2	430.247818	858.481082	-0.87092	-0.00037471	0.26921	0.00011583	-0.60171	-0.00025888	430.24796909156214	23.371	0.30256	23.371	23.246	23.549	0					20	10	3	0	0	0	0.23331	1	7005	7005		120.87	16.122	1	631400			47416	6070	31482	31611	48014	48014					0.04618096006140604
VSQVGKEL	8	Unmodified	_VSQVGKEL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.24774169921875	2	430.247818	858.481082	2.5286	0.0010879	-2.5728	-0.0011069	-0.044191	-1.9013E-05	430.24659082375416	23.574	0.51276	23.574	23.401	23.914	0					41	10	6	0	0	0	0.10774	1	8014	8014		158.07	14.968	1	3330900			47417	6070	31482	31611	48015	48015					0.04618096006140604
VSQVRLRH	8	Unmodified	_VSQVRLRH_					0	0	0		ENST00000536474.1_1_12:110173555-110173708:-|nuORF	ENST00000536474.1_1_12:110173555-110173708:-|nuORF	ENST00000536474.1_1_12:110173555-110173708:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.8000793457031	2	497.798875	993.583196	1.0107	0.00050311	2.2293	0.0011098	3.24	0.0016129	497.7997662788311	39.844	0.50146	39.844	39.686	40.188	0					14	11	2	0	0	0	0.63077	1	15802	15802		44.117	6.9577	1	87158			47418	10487	31483	31612	48016	48016					0.08614806868411051
VSQVSSHL	8	Unmodified	_VSQVSSHL_					0	0	0			REV__nc|ENSG821|P63135|ERVK-7_pol	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.73028564453125	2	428.729792	855.445031	0.94429	0.00040485	0.21451	9.1965E-05	1.1588	0.00049681	428.72987102848606	21.717	0.16756	21.717	21.608	21.776	0					5	3	2	0	0	0	0.49216	1	7258	7258		60.972	2.19	1	397980	+		47419	21269	31484	31613	48017	48017					0.011526388292850243
VSRAAMKYSS	10	Unmodified	_VSRAAMKYSS_					0	0	0			REV__ENST00000347635.8_1_22:45559863-45559941:+|nuORF	REV__ENST00000347635.8_1_22:45559863-45559941:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.2818603515625	2	550.281866	1098.54918	1.5481	0.00085191	-2.1174	-0.0011652	-0.56927	-0.00031326	550.7825549655662	33.047	0.12784	33.047	32.989	33.117	0					10	6	2	0	0	0	0.54861	1	10735	10735		40.058	0.80534	1	76200	+		47420	18486	31485	31614	48018	48018					0.003845975945068858
VSRCAPGKP	9	Unmodified	_VSRCAPGKP_					0	0	0		nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.74639892578125	2	457.747462	913.480371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.147	1	28.147	27.647	28.647	0								0	0	0	0.24724	1	8759	8759		44.117	1.6423	1				47421	7995	31486	31615	48019	48019					0.020169780854416786
VSRGRSQEK	9	Unmodified	_VSRGRSQEK_					0	0	0		ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	349.52935791015625	3	349.528228	1045.56285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.66	1	17.66	17.16	18.16	0								0	0	0	0.35737	1	4449	4449		23.523	3.4922	1				47422	2979	31487	31616	48020	48020					0.04189591417957672
VSRIADSEK	9	Unmodified	_VSRIADSEK_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH;ENST00000592479.5_1_18:59895775-59902130:+|nuORF	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.77203369140625	2	502.772188	1003.52982	-0.067897	-3.4137E-05	0.032626	1.6404E-05	-0.03527	-1.7733E-05	502.77231008712454	13.487	0.25718	13.487	13.367	13.624	0					18	7	3	0	0	0	0.36892	1	3097	3097		44.377	3.599	1	457230			47423	3919	31488	31617	48021	48021					0.0281996457523519
VSRIADSEK	9	Unmodified	_VSRIADSEK_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH;ENST00000592479.5_1_18:59895775-59902130:+|nuORF	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7722473144531	2	502.772188	1003.52982	0.98927	0.00049738	-1.0546	-0.0005302	-0.065294	-3.2828E-05	502.7717147845508	13.509	0.23373	13.509	13.419	13.653	0					13	5	4	0	0	0	0.07136	1	3300	3300		87.696	0	1	1282000			47424	3919	31488	31617	48022	48022					0.0281996457523519
VSRIADSEK	9	Unmodified	_VSRIADSEK_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH;ENST00000592479.5_1_18:59895775-59902130:+|nuORF	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.77178955078125	2	502.772188	1003.52982	1.1602	0.00058331	-1.7365	-0.00087306	-0.5763	-0.00028975	502.7714355755459	13.43	0.14465	13.43	13.38	13.524	0					7	3	3	0	0	0	0.07136	1	3126	3126		87.696	2.5356	1	440090			47425	3919	31488	31617	48023	48023					0.0281996457523519
VSRKDLLE	8	Unmodified	_VSRKDLLE_					0	0	0		tr|U7SYZ9|U7SYZ9_FUSNUEthanolamineutilizationcobalaminadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00827PE=4SV=1	tr|U7SYZ9|U7SYZ9_FUSNUEthanolamineutilizationcobalaminadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00827PE=4SV=1	tr|U7SYZ9|U7SYZ9_FUSNUEthanolamineutilizationcobalaminadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00827PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2790832519531	2	480.279649	958.544745	-0.30317	-0.00014561	-0.42261	-0.00020297	-0.72578	-0.00034858	480.2794253988237	35.118	0.23538	35.118	35.025	35.26	0					12	7	3	0	0	0	0.25873	1	12498	12498		96.19	8.4361	1	136520			47426	22887	31489	31618	48024	48024					0.06381456443227762
VSRKEVEL	8	Unmodified	_VSRKEVEL_					0	0	0			REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.27899169921875	2	480.279649	958.544745	0.032518	1.5618E-05	-0.81724	-0.0003925	-0.78472	-0.00037689	480.2794262347274	35.083	0.19743	35.083	34.99	35.188	0					13	8	3	0	0	0	0.61925	1	11490	11490		45.972	1.5951	1	70606	+		47427	15098	31490	31619	48025	48025					0.06381456443239131
VSRKEVEL	8	Unmodified	_VSRKEVEL_					0	0	0			REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2789306640625	2	480.279649	958.544745	0.050099	2.4062E-05	-0.69265	-0.00033266	-0.64255	-0.0003086	480.27926194079566	29.865	0.45381	29.865	29.686	30.14	0					48	18	3	0	0	0	0.75323	1	9545	9545		26.693	0	1	851150	+		47428	15098	31490	31619	48026	48026					0.06381456443239131
VSRKGSKDVV	10	Unmodified	_VSRKGSKDVV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.88055419921875	3	358.880379	1073.61931	-0.90821	-0.00032594	0.74749	0.00026826	-0.16072	-5.7678E-05	358.88073607908086	16.22	0.090015	16.22	16.158	16.248	0					6	3	2	0	0	0	0.50287	1	3843	3843		45.022	5.7694	1	77576			47429	4282	31491	31620	48027	48027					0.08544219254599739
VSRLEEQM	8	Oxidation (M)	_VSRLEEQM(Oxidation (M))_		VSRLEEQM(1)		VSRLEEQM(100)	0	0	1		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.24298095703125	2	504.244949	1006.47534	-2.0155	-0.0010163	-1.6522	-0.00083311	-3.6676	-0.0018494	504.24407231074736	23.159	0.18738	23.159	23.064	23.251	0					9	4	3	0	0	0	0.2498	1	7027	7027		101.6	10.824	1	166320			47430	1219	31492	31621	48028	48028		59			-0.02763370567822676
VSRLSARTQ	9	Unmodified	_VSRLSARTQ_					0	0	0			REV__nc|ENSG00000177602|Q8TF76-2|HASPIN	REV__nc|ENSG00000177602|Q8TF76-2|HASPIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	339.864501953125	3	339.86484	1016.57269	1.5707	0.00053384	-1.2473	-0.00042393	0.32339	0.00010991	339.86414073299113	12.97	0.24082	12.97	12.87	13.111	0					8	5	2	0	0	0	0.53083	1	2906	2906		29.17	0	1	125800	+		47431	16700	31493	31622	48029	48029					0.06506779423318676
VSRLYKEI	8	Unmodified	_VSRLYKEI_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5342102050781	3	336.53432	1006.58113	-0.67403	-0.00022683	0.68053	0.00022902	0.0064986	2.187E-06	336.53450439712606	23.055	0.8523	23.055	22.722	23.574	0					50	29	2	0	0	0	0.8006	1	7020	7020		16.473	0.83134	1	165000	+		47432	17363	31494	31623	48030	48030					0.0781033333993264
VSRNLGPK	8	Unmodified	_VSRNLGPK_					0	0	0		nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF;ENSG00000144481|ENST00000324695|TRPM8	nc|ENSG00000144481|Q7Z2W7-4|TRPM8	nc|ENSG00000144481|Q7Z2W7-4|TRPM8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.76129150390625	2	435.761426	869.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.106	1	18.106	17.606	18.606	0								0	0	0	1.7419	1	4660	4660		63.306	6.5852	1				47433	4619	31495	31624	48031	48031					0.06832624337187099
VSRPSAVPT	9	Unmodified	_VSRPSAVPT_					0	0	0			REV__nc|ENSG00000053747|Q16787-4|LAMA3	REV__nc|ENSG00000053747|Q16787-4|LAMA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2585144042969	2	457.258717	912.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.61	1	18.61	18.11	19.11	0								0	0	0	0.35377	1	4891	4891		24.519	0.31644	1		+		47434	13043	31496	31625	48032	48032					0.04312900754700877
VSRSDLVV	8	Unmodified	_VSRSDLVV_					0	0	0			REV__ENSG00000188626|ENST00000563027|GOLGA8M	REV__ENSG00000188626|ENST00000563027|GOLGA8M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.7529602050781	2	437.753267	873.491981	-0.40048	-0.00017531	0.10576	4.6297E-05	-0.29472	-0.00012901	437.7532416260775	14.429	0.14803	14.429	14.332	14.48	0					7	3	3	0	0	0	0.46905	1	3749	3749		63.306	0	1	303270	+		47435	17180	31497	31626	48033	48033					0.050174983804254225
VSRSDTQKPD	10	Unmodified	_VSRSDTQKPD_					0	0	0			REV__ENST00000494921.1_1_20:18568716-18611186:+|nuORF	REV__ENST00000494921.1_1_20:18568716-18611186:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	378.1913146972656	3	378.191282	1131.55202	0.81291	0.00030743	-0.79702	-0.00030143	0.015886	6.008E-06	378.19094900414444	19.484	0.182	19.484	19.402	19.584	0					10	4	3	0	0	0	0.58189	1	5897	5897		36.447	1.2947	1	1165100	+		47436	19757	31498	31627	48034	48034					-0.008498557469920343
VSRSDTQKPD	10	Unmodified	_VSRSDTQKPD_					0	0	0			REV__ENST00000494921.1_1_20:18568716-18611186:+|nuORF	REV__ENST00000494921.1_1_20:18568716-18611186:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	378.1913146972656	3	378.191282	1131.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.279	1	19.279	18.779	19.779	0								0	0	0	0.3805	1	5204	5204		36.447	0	1		+		47437	19757	31498	31627	48035	48035					-0.008498557469920343
VSRSGEKLK	9	Unmodified	_VSRSGEKLK_					0	0	0			REV__ENST00000530261.1_1_11:77851057-77860099:+|nuORF	REV__ENST00000530261.1_1_11:77851057-77860099:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.29840087890625	2	502.298373	1002.58219	-0.072647	-3.649E-05	-0.079522	-3.9944E-05	-0.15217	-7.6434E-05	502.2983456402671	14.899	0.09006	14.899	14.851	14.941	0					4	2	2	0	0	0	0.30841	1	3740	3740		49.536	7.1399	1	625090	+		47438	20044	31499	31628	48036	48036					0.08100547708841077
VSRSRAAAL	9	Unmodified	_VSRSRAAAL_					0	0	0		nc|ENSG00000183496|Q6ZN04-3|MEX3B	nc|ENSG00000183496|Q6ZN04-3|MEX3B	nc|ENSG00000183496|Q6ZN04-3|MEX3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.7769470214844	2	465.777608	929.540663	0.6739	0.00031389	-0.51139	-0.00023819	0.16251	7.5694E-05	465.7771462845974	47.342	1.1353	47.342	47.084	48.22	0					77	59	2	0	0	0	0.59802	1	18854	18854		21.96	0	1	135220			47439	11675	31500	31629	48037	48037					0.07307411740168845
VSRTKTQPG	9	Unmodified	_VSRTKTQPG_					0	0	0		nc|ENSG00000229214|Q5T6M2|LINC00242	nc|ENSG00000229214|Q5T6M2|LINC00242	nc|ENSG00000229214|Q5T6M2|LINC00242	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.27435302734375	2	487.274898	972.535243	-0.33449	-0.00016299	-0.31553	-0.00015375	-0.65001	-0.00031674	487.27475093571167	11.546	0.11276	11.546	11.463	11.576	0					8	4	2	0	0	0	0.61124	1	2237	2237		10.265	2.034	1	214350			47440	11775	31501	31630	48038	48038					0.04787688157705361
VSRYLQPR	8	Unmodified	_VSRYLQPR_					0	0	0			REV__ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	REV__ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.79364013671875	2	509.793258	1017.57196	-1.8303	-0.00093306	1.9922	0.0010156	0.16197	8.2572E-05	509.7943255865189	24.355	0.35111	24.355	24.155	24.506	0					18	8	3	0	0	0	0.5676	1	7601	7601		53.351	7.3792	1	171160	+		47441	12213	31502	31631	48039	48039					0.06387984774278266
VSRYNIKGK	9	Unmodified	_VSRYNIKGK_					0	0	0		tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	355.8793640136719	3	355.545219	1063.61383	0.43453	0.00015449	-0.64259	-0.00022847	-0.20807	-7.3977E-05	355.8791171899697	16.868	0.075233	16.868	16.84	16.915	0					5	3	2	0	0	0	0.59802	1	3927	3927		16.717	0	1	69643			47442	22799	31503	31632	48040	48040					0.08456540462793782
VSSAKRSLR	9	Unmodified	_VSSAKRSLR_					0	0	0		ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	335.2037048339844	3	335.205085	1002.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.359	1	24.359	23.859	24.859	0								0	0	0	0.3693	1	8190	8190		19.997	0.89325	1				47443	4075	31504	31633	48041	48041					0.09223369802987236
VSSALGVQH	9	Unmodified	_VSSALGVQH_					0	0	0		PPRC1|p.G704Vfs*30|1|0.2|ENSG00000148840|chr10:102140614-102140614|G/-|frameshift_variant	PPRC1|p.G704Vfs*30|1|0.2|ENSG00000148840|chr10:102140614-102140614|G/-|frameshift_variant	PPRC1|p.G704Vfs*30|1|0.2|ENSG00000148840|chr10:102140614-102140614|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.242919921875	2	449.243067	896.47158	0.13133	5.9E-05	-0.68658	-0.00030844	-0.55525	-0.00024944	449.2427676301659	19.319	0.69177	19.319	18.816	19.508	0					21	17	2	0	0	0	0.35045	1	5609	5609		45.952	8.1404	1	104580			47444	11968	31505	31634	48042	48042					0.019203277206202074
VSSARRRL	8	Unmodified	_VSSARRRL_					0	0	0		ENST00000570306.5_1_17:19282213-19282612:+|nuORF;ENST00000572968.5_1_17:19282213-19283750:+|nuORF;ENST00000486905.1_1_17:19281885-19283261:+|nuORF;nc|ENSG00000166484|Q13164-3|MAPK7;ENST00000490660.2_1_17:19282213-19285121:+|nuORF;ENSG00000166484|ENST00000395604|MAPK7	ENST00000570306.5_1_17:19282213-19282612:+|nuORF	ENST00000570306.5_1_17:19282213-19282612:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7922668457031	2	472.79105	943.567546	2.4243	0.0011462	0.091627	4.332E-05	2.5159	0.0011895	472.7911244531077	24.554	1.0554	24.554	23.7	24.756	0					61	21	4	0	0	0	0.65276	1	8381	8381		40.573	0	1	3101600			47445	5910	31506	31635	48043	48043					0.0935052035138142
VSSAVILTK	9	Unmodified	_VSSAVILTK_					0	0	0		nc|ENSG00000120519|Q0GE19-5|SLC10A7;nc|ENSG00000120519|Q0GE19-4|SLC10A7;nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-5|SLC10A7	nc|ENSG00000120519|Q0GE19-5|SLC10A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.28680419921875	2	459.286943	916.559333	0.16087	7.3886E-05	-0.40532	-0.00018616	-0.24445	-0.00011227	459.28668817753	27.886	0.14758	27.886	27.805	27.953	0					5	3	2	0	0	0	0.0088974	1	9793	9793		143.37	69.119	1	97350			47446	3175	31507	31636	48044	48044					0.09771528591386414
VSSAVILTK	9	Unmodified	_VSSAVILTK_					0	0	0		nc|ENSG00000120519|Q0GE19-5|SLC10A7;nc|ENSG00000120519|Q0GE19-4|SLC10A7;nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-5|SLC10A7	nc|ENSG00000120519|Q0GE19-5|SLC10A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.2867736816406	2	459.286943	916.559333	-0.1562	-7.1738E-05	-0.32926	-0.00015122	-0.48545	-0.00022296	459.28671667527743	27.856	0.21565	27.856	27.764	27.98	0					9	4	3	0	0	0	0.38666	1	10157	10157		42.864	5.0528	1	245760			47447	3175	31507	31636	48045	48045					0.09771528591386414
VSSAVPLAAV	10	Unmodified	_VSSAVPLAAV_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2713623046875	2	457.271293	912.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.645	1	27.645	27.145	28.145	0								0	0	0	0.38322	1	8832	8832		35.618	5.1146	1		+		47448	14122	31508	31637	48046	48046					0.06826955557289693
VSSCLMPFCP	10	Carbamidomethyl (C),Oxidation (M)	_VSSC(Carbamidomethyl (C))LM(Oxidation (M))PFCP_	VSSC(0.997)LMPFC(0.003)P	VSSCLM(1)PFCP	VSSC(25)LMPFC(-25)P	VSSCLM(41)PFCP	0	1	1		ENST00000436066.3_1_19:30166084-30166339:+|nuORF	ENST00000436066.3_1_19:30166084-30166339:+|nuORF	ENST00000436066.3_1_19:30166084-30166339:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.747802734375	2	578.745413	1155.47627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.277	1	16.277	15.777	16.777	0								0	0	0	0.3639	1	3871	3871		40.778	9.2484	2				47449	9526	31509	31638	48047	48047	393	382			-0.09524615514783363
VSSDSVAKFA	10	Unmodified	_VSSDSVAKFA_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7613220214844	2	505.761289	1009.50803	0.10565	5.3436E-05	-0.073941	-3.7396E-05	0.031714	1.604E-05	505.76123732468403	37.287	0.46622	37.287	37.173	37.639	0					72	23	5	0	0	0	0.43008	1	13444	13444		52.937	8.5595	1	4765800			47450	5134;11594	31510	31639	48048	48048					0.0036515982667424396
VSSDVKQTF	9	Unmodified	_VSSDVKQTF_					0	0	0		ENST00000380289.2_1_X:16170776-16171058:+|nuORF	ENST00000380289.2_1_X:16170776-16171058:+|nuORF	ENST00000380289.2_1_X:16170776-16171058:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.76055908203125	2	505.761289	1009.50803	-0.044955	-2.2737E-05	-0.34834	-0.00017618	-0.3933	-0.00019892	505.76104947687713	37.56	0.33944	37.56	37.451	37.79	0					30	10	4	0	0	0	0.35021	1	14318	14318		45.972	0	1	1568700			47451	9093	31511	31640	48049	48049					0.0036515982667424396
VSSEKIPSQGQ	11	Unmodified	_VSSEKIPSQGQ_					0	0	0			REV__ENST00000442358.5_1_1:158102111-158102970:-|nuORF	REV__ENST00000442358.5_1_1:158102111-158102970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.8082275390625	2	580.30131	1158.58807	1.5486	0.00089865	1.3127	0.00076177	2.8613	0.0016604	580.3008353941322	25.545	0.61661	25.545	25.138	25.755	0					19	12	2	0	0	0	0.20372	1	9167	9167		73.841	15.595	1	665870	+		47452	19250	31512	31641	48050	48050					0.015116014298428126
VSSGQQSI	8	Unmodified	_VSSGQQSI_					0	0	0			REV__MYO7B|p.S1033I|1|0.17|ENSG00000169994|chr2:127609922-127609922|G/T|missense_variant	REV__MYO7B|p.S1033I|1|0.17|ENSG00000169994|chr2:127609922-127609922|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	403.2060241699219	2	403.20615	804.397747	0.95506	0.00038509	-1.05	-0.00042337	-0.094955	-3.8286E-05	403.20571300764703	14.657	0.25859	14.657	14.616	14.875	0					20	6	5	0	0	0	0.23144	1	3629	3629		122.18	3.4329	1	2104700	+		47453	20914	31513	31642	48051	48051					-0.012276404416979858
VSSGQQSI	8	Unmodified	_VSSGQQSI_					0	0	0			REV__MYO7B|p.S1033I|1|0.17|ENSG00000169994|chr2:127609922-127609922|G/T|missense_variant	REV__MYO7B|p.S1033I|1|0.17|ENSG00000169994|chr2:127609922-127609922|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	403.2063293457031	2	403.20615	804.397747	0.044067	1.7768E-05	0.025462	1.0267E-05	0.069529	2.8035E-05	403.20618248503314	14.655	0.26056	14.655	14.553	14.813	0					13	5	3	0	0	0	0.23144	1	3834	3834		122.18	3.4329	1	4003000	+		47454	20914	31513	31642	48052	48052					-0.012276404416979858
VSSIVVNIT	9	Unmodified	_VSSIVVNIT_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.276611328125	2	466.276575	930.538597	-0.49898	-0.00023266	-0.21192	-9.8811E-05	-0.7109	-0.00033148	466.2766162572489	33.817	0.62371	33.817	33.3	33.924	0					22	13	3	0	0	0	0.15163	1	12885	12885		67.494	1.0644	1	194220			47455	8049	31514	31643	48053	48053					0.07054938211717854
VSSKAAAAAGP	11	Unmodified	_VSSKAAAAAGP_					0	0	0			REV__ENST00000587457.1_1_19:55741658-55741895:-|nuORF	REV__ENST00000587457.1_1_19:55741658-55741895:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	465.2559509277344	2	465.256174	928.497795	0.69243	0.00032216	-1.5519	-0.00072202	-0.85945	-0.00039986	465.2554515082653	24.122	0.31775	24.122	24.012	24.33	0					11	6	2	0	0	0	0.69733	1	8289	8289		27.882	0	1	710050	+		47456	20493	31515	31644	48054	48054					0.030685968920693085
VSSKIELN	8	Unmodified	_VSSKIELN_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.N934Ifs*6|1|0.26|ENSG00000113522|chr5:132608690-132608690|A/-|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.253173828125	2	445.2531	888.491647	0.18525	8.2481E-05	-0.38752	-0.00017254	-0.20227	-9.0063E-05	445.25287332014665	22.392	0.50814	22.392	22.097	22.605	0					30	15	3	0	0	0	0.65148	1	6255	6255		40.778	0	1	256070			47457	2806	31516	31645	48055	48055					0.042940786605640824
VSSKPSTMK	9	Unmodified	_VSSKPSTMK_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7598571777344	2	482.760235	963.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.318	1	14.318	13.818	14.818	0								0	0	0	0.16453	1	3534	3534		56.434	12.057	1				47458	3338	31517	31646	48056	48056					0.022704078172068876
VSSKTVKE	8	Unmodified	_VSSKTVKE_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	439.25341796875	2	439.2531	876.491647	-0.016482	-7.2398E-06	-0.57796	-0.00025387	-0.59444	-0.00026111	439.25294539464824	23.76	0.15873	23.76	23.704	23.863	0					5	3	2	0	0	0	0.65276	1	7926	7926		40.573	0	1	63581			47459	6486	31518	31647	48057	48057					0.048460786605687645
VSSKVLGCTM	10	Unmodified	_VSSKVLGCTM_					0	0	0		ENST00000578082.5_1_17:80426730-80430469:+|nuORF	ENST00000578082.5_1_17:80426730-80430469:+|nuORF	ENST00000578082.5_1_17:80426730-80430469:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.7606811523438	2	512.76192	1023.50929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.219	1	35.219	34.719	35.719	0								0	0	0	0.3805	1	11543	11543		36.447	4.4919	1				47460	10847	31519	31648	48058	48058					-0.0015266540044649446
VSSLVPSAQA	10	Unmodified	_VSSLVPSAQA_					0	0	0		ENST00000470306.5_1_1:156126086-156128580:+|nuORF	ENST00000470306.5_1_1:156126086-156128580:+|nuORF	ENST00000470306.5_1_1:156126086-156128580:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7647705078125	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.733	1	28.733	28.233	29.233	0								0	0	0	0.39665	1	10563	10563		31.53	0	1				47461	9838	31520	31649	48059	48059					0.032654636892857525
VSSLVSNLL	9	Unmodified	_VSSLVSNLL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;FNIP1|p.L1078S|1|0.25|ENSG00000217128|chr5:131651875-131651875|A/G|missense_variant	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.2767639160156	2	466.276575	930.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.339	1	33.339	32.839	33.839	0								0	0	0	0.27939	1	10830	10830		39.253	1.4413	1				47462	11763	31521	31650	48060	48060					0.07054938211717854
VSSLWVRR	8	Unmodified	_VSSLWVRR_					0	0	0			REV__ENSG00000153975|ENST00000368576|ZUP1	REV__ENSG00000153975|ENST00000368576|ZUP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.86578369140625	3	334.866293	1001.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.476	1	26.476	25.976	26.976	0								0	0	0	1.7419	1	9480	9480		29.15	0	1		+		47463	15554	31522	31651	48061	48061					0.07632288636898465
VSSNSALQ	8	Unmodified	_VSSNSALQ_					0	0	0		ENST00000504260.5_1_17:47783523-47784713:-|nuORF;ENST00000508607.1_1_17:47783523-47785148:-|nuORF;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000504260.5_1_17:47783523-47784713:-|nuORF	ENST00000504260.5_1_17:47783523-47784713:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	403.20599365234375	2	403.20615	804.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.382	1	14.382	13.882	14.882	0								0	0	0	1.7419	1	2957	2957		62.107	0	1				47464	3211	31523	31652	48062	48062					-0.012276404417207232
VSSPAGVGVT	10	Unmodified	_VSSPAGVGVT_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2371826171875	2	437.23745	872.460347	-0.40796	-0.00017838	-0.74633	-0.00032632	-1.1543	-0.0005047	437.2374854923704	16.655	0.40546	16.655	16.38	16.785	0					14	8	2	0	0	0	0.39566	1	4831	4831		56.721	1.9447	1	162370			47465	3900	31524	31653	48063	48063					0.019015056264947816
VSSPKLAPK	9	Unmodified	_VSSPKLAPK_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ENST00000495527.5_2_1:203819629-203821524:+|nuORF	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	463.786865234375	2	463.78711	925.559667	-0.70025	-0.00032477	0.56097	0.00026017	-0.13927	-6.4593E-05	463.7871886096823	19.337	0.44832	19.337	18.993	19.441	0					26	10	4	0	0	0	0.11411	1	5835	5835		76.17	28.21	1	700920			47466	1306	31525	31654	48064	48064					0.09390948311227021
VSSPKLAPK	9	Unmodified	_VSSPKLAPK_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ENST00000495527.5_2_1:203819629-203821524:+|nuORF	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.787109375	2	463.78711	925.559667	-1.1532	-0.00053483	1.141	0.00052918	-0.012178	-5.6481E-06	463.7875283276807	19.074	0.42873	19.074	18.723	19.152	0					22	13	2	0	0	0	0.28897	1	5011	5011		51.193	11.94	1	310150			47467	1306	31525	31654	48065	48065					0.09390948311227021
VSSPPTLPSL	10	Unmodified	_VSSPPTLPSL_					0	0	0			REV__KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant	REV__KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.2817077636719	2	499.281857	996.549162	0.67526	0.00033715	-0.82277	-0.0004108	-0.14751	-7.365E-05	499.2813500204576	29.409	0.21171	29.409	29.285	29.496	0					13	5	3	0	0	0	0.3337	1	10495	10495		42.396	0	1	767340	+		47468	14212	31526	31655	48066	48066					0.050749208661500234
VSSPRLRTGEQ	11	Unmodified	_VSSPRLRTGEQ_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.55938720703125	3	410.558076	1228.6524	2.9627	0.0012164	0.032493	1.334E-05	2.9952	0.0012297	410.55810533554103	25.642	0.30596	25.642	25.531	25.837	0					6	4	2	0	0	0	0.20372	1	9018	9018		73.841	5.2153	1	607890	+		47469	13389	31527	31656	48067	48067					0.047218013066640196
VSSPSKSKK	9	Unmodified	_VSSPSKSKK_					0	0	0		ENST00000237841.5_1_12:3949907-3950609:+|nuORF;ENST00000455611.6_1_4:146049153-146095893:-|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4	ENST00000237841.5_1_12:3949907-3950609:+|nuORF	ENST00000237841.5_1_12:3949907-3950609:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.7688903808594	2	474.279649	946.544745	0.60876	0.00028872	-1.3027	-0.00061784	-0.69392	-0.00032911	474.2791681359458	11.957	5.5556	11.957	11.762	17.318	0					339	121	5	0	0	0	0.30951	1	2546	2546		49.442	7.0454	1	515490000			47470	5665	31528	31657	48068	48068					0.06933456443232444
VSSPTWEN	8	Unmodified	_VSSPTWEN_					0	0	0		nc|ENSG00000120053|P17174-2|GOT1;ENSG00000120053|ENST00000370508|GOT1	nc|ENSG00000120053|P17174-2|GOT1	nc|ENSG00000120053|P17174-2|GOT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.21295166015625	2	460.211432	918.408311	2.5367	0.0011674	0.48896	0.00022503	3.0257	0.0013924	460.2118371424244	26.077	0.59736	26.077	25.684	26.282	0					26	10	4	0	0	0	0.49216	1	9157	9157		60.972	2.19	1	1329200			47471	3157	31529	31658	48069	48069					-0.054156577872845446
VSSQGGQTY	9	Unmodified	_VSSQGGQTY_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	463.7158203125	2	463.714339	925.414125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.542	1	38.542	38.042	39.042	0								0	0	0	0.28996	1	12997	12997		37.159	1.9584	1				47472	6004	31530	31659	48070	48070					-0.05156559275633299
VSSQLQDY	8	Unmodified	_VSSQLQDY_					0	0	0			REV__nc|ENSG00000213921|A8MZ59-1|LEUTX	REV__nc|ENSG00000213921|A8MZ59-1|LEUTX	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	470.7279968261719	2	470.224539	938.434526	-0.22184	-0.00010432	1.9587	0.00092102	1.7368	0.0008167	470.2248465125497	28.425	0.24885	28.425	28.337	28.586	0					10	6	2	0	0	0	0.46013	1	9423	9423		64.207	0.67341	1	132510	+		47473	17571	31531	31660	48071	48071					-0.03715388615819393
VSSRRQPR	8	Unmodified	_VSSRRQPR_					0	0	0			REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2873840332031	2	493.286131	984.55771	2.7632	0.001363	-0.14499	-7.1523E-05	2.6182	0.0012915	493.28606946998065	21.911	0.61747	21.911	21.454	22.071	0					19	12	3	0	0	0	0.61938	1	7244	7244		45.952	12.436	1	10935000	+		47474	17235	31532	31661	48072	48072					0.06481332345992996
VSSSDIGRAK	10	Unmodified	_VSSSDIGRAK_					0	0	0			REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.5209045410156	3	340.520851	1018.54072	0.67127	0.00022858	-0.89471	-0.00030467	-0.22344	-7.6086E-05	340.52059488265826	16.11	0.3129	16.11	16.021	16.334	0					12	7	3	0	0	0	0.65213	1	4292	4292		32.751	0	1	2426600	+		47475	16127	31533	31662	48073	48073					0.0321936694950864
VSSSDIGRAK	10	Unmodified	_VSSSDIGRAK_					0	0	0			REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.5209045410156	3	340.520851	1018.54072	1.564	0.00053257	-1.562	-0.00053188	0.0020289	6.909E-07	340.52035351617417	16.039	0.32038	16.039	15.93	16.251	0					13	6	3	0	0	0	0.65213	1	4369	4369		32.751	0	1	2721800	+		47476	16127	31533	31662	48074	48074					0.0321936694950864
VSSSVALV	8	Unmodified	_VSSSVALV_					0	0	0			REV__ENSG00000177673|ENST00000313965|TEX44	REV__ENSG00000177673|ENST00000313965|TEX44	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.2239074707031	2	381.223811	760.433069	0.21698	8.2716E-05	0.40019	0.00015256	0.61716	0.00023528	381.2239358913488	28.105	0.19469	28.105	28.012	28.207	0					6	4	2	0	0	0	0.527	1	10271	10271		57.453	10.686	1	51235	+		47477	16705	31534	31663	48075	48075					0.043270220860904374
VSSSVLPKAAF	11	Unmodified	_VSSSVLPKAAF_					0	0	0		nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.21148681640625	3	369.213246	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.832	1	44.832	44.332	45.332	0								0	0	0	0.45344	1	17960	17960		25.126	1.7481	1				47478	11518	31535	31664	48076	48076					0.06978585165848017
VSSTDTVPL	9	Unmodified	_VSSTDTVPL_					0	0	0			REV__ENSG00000145113|ENST00000463781|MUC4	REV__ENSG00000145113|ENST00000463781|MUC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.74139404296875	2	459.742565	917.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.429	1	24.429	23.929	24.929	0								0	0	0	0.22106	1	7210	7210		47.916	1.1492	1		+		47479	15257	31536	31665	48077	48077					0.008540685610341825
VSSTSGMSLA	10	Unmodified	_VSSTSGMSLA_					0	0	0			REV__nc|ENSG00000171608|O00329-2|PIK3CD	REV__nc|ENSG00000171608|O00329-2|PIK3CD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	470.73089599609375	2	470.226225	938.437897	-0.53766	-0.00025282	-2.0664	-0.00097166	-2.604	-0.0012245	470.22446466477766	28.567	0.61434	28.567	28.311	28.925	0					30	12	4	0	0	0	0.47859	1	10452	10452		47.657	5.2612	1	1450900	+		47480	21119	31537	31666	48078	48078					-0.03378461833437996
VSSTTEAGIS	10	Unmodified	_VSSTTEAGIS_					0	0	0		ENST00000483977.5_1_21:35497749-35514781:+|nuORF	ENST00000483977.5_1_21:35497749-35514781:+|nuORF	ENST00000483977.5_1_21:35497749-35514781:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.2375793457031	2	476.235104	950.455655	2.2797	0.0010857	2.4818	0.0011819	4.7615	0.0022676	476.2364146608224	44.022	0.22342	44.022	43.944	44.168	0					15	9	2	0	0	0	0.44469	1	17625	17625		51.335	6.9583	1	140590			47481	9986	31538	31667	48079	48079					-0.021554233069309703
VSSVGSLRK	9	Unmodified	_VSSVGSLRK_					0	0	0			REV__RIPK4|p.P522Rfs*90|1|0.29|ENSG00000183421|chr21:41741772-41741772|G/-|frameshift_variant	REV__RIPK4|p.P522Rfs*90|1|0.29|ENSG00000183421|chr21:41741772-41741772|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.77960205078125	2	466.779816	931.545079	-1.1907	-0.00055578	0.55807	0.0002605	-0.63258	-0.00029528	466.78010712364585	19.355	0.16531	19.355	19.247	19.412	0					5	3	2	0	0	0	0.35021	1	6114	6114		45.972	1.8554	1	527200	+		47482	16934	31539	31668	48080	48080					0.07656876163093784
VSSVLETKK	9	Unmodified	_VSSVLETKK_					0	0	0		tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.7944641113281	2	495.795132	989.575711	-0.062635	-3.1054E-05	-1.3079	-0.00064845	-1.3705	-0.0006795	495.79441829831586	20.218	0.11816	20.218	20.159	20.277	0					6	4	2	0	0	0	0.47038	1	5374	5374		35.618	2.8059	1	50722			47483	22895	31540	31669	48081	48081					0.0805060975745846
VSSVPPVKR	9	Unmodified	_VSSVPPVKR_					0	0	0		HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant;HFM1|p.N1388Tfs*37|1|0.26|ENSG00000162669|chr1:91262316-91262316|T/-|frameshift_variant;ENSG00000162669|ENST00000370425|HFM1;nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF	HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant	HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7977294921875	2	484.798009	967.581465	0.035548	1.7234E-05	-0.65167	-0.00031593	-0.61612	-0.00029869	484.79762771107335	35.693	0.23491	35.693	35.586	35.821	0					19	11	2	0	0	0	0.59802	1	11678	11678		21.96	5.4867	1	167960			47484	5486	31541	31670	48082	48082					0.09637753059803345
VSSVQKSRE	9	Unmodified	_VSSVQKSRE_					0	0	0			REV__ENST00000503773.6_1_5:55236912-55256289:-|nuORF	REV__ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	340.52081298828125	3	340.520851	1018.54072	-0.054759	-1.8647E-05	-0.023273	-7.9248E-06	-0.078032	-2.6572E-05	340.5208990249343	15.842	0.10435	15.842	15.794	15.898	0					6	4	2	0	0	0	0.5879	1	3639	3639		23.523	0	1	224290	+		47485	14741	31542	31671	48083	48083					0.032193669495200083
VSSWILIAK	9	Unmodified	_VSSWILIAK_					0	0	0			REV__ENST00000437325.2_1_1:235901419-235901638:+|nuORF	REV__ENST00000437325.2_1_1:235901419-235901638:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	339.5415954589844	3	339.542816	1015.60662	0.52973	0.00017987	-3.6691	-0.0012458	-3.1394	-0.001066	339.5413056118507	22.045	0.16315	22.045	21.939	22.102	0					11	3	4	0	0	0	0.61124	1	7419	7419		19.104	0.84144	1	181600	+		47486	19215	31543	31672	48084	48084					0.09943807862362064
VSSWLPLAK	9	Unmodified	_VSSWLPLAK_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.79449462890625	2	500.794935	999.575317	0.66441	0.00033274	-0.6418	-0.00032141	0.022612	1.1324E-05	500.7946349176967	43.186	0.29037	43.186	43.068	43.359	0					30	16	3	0	0	0	0.19605	1	16300	16300		62.107	27.935	1	208410			47487	2252	31544	31673	48085	48085					0.07551234828270026
VSSWLPLAK	9	Unmodified	_VSSWLPLAK_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7951354980469	2	500.794935	999.575317	0.91706	0.00045926	-0.67427	-0.00033767	0.24279	0.00012159	500.79465440928044	43.15	0.28972	43.15	43.061	43.351	0					23	15	2	0	0	0	0.25716	1	16893	16893		54.776	17.617	1	152060			47488	2252	31544	31673	48086	48086					0.07551234828270026
VSSWLPLAK	9	Unmodified	_VSSWLPLAK_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7948303222656	2	500.794935	999.575317	1.1041	0.00055291	-1.1438	-0.0005728	-0.039723	-1.9893E-05	500.7944573086614	43.111	0.3624	43.111	42.928	43.291	0					18	11	2	0	0	0	0.037569	1	17234	17234		101.6	42.819	1	527090			47489	2252	31544	31673	48087	48087					0.07551234828270026
VSSYRGRK	8	Unmodified	_VSSYRGRK_					0	0	0		nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.76910400390625	2	476.769783	951.525013	2.2604	0.0010777	-3.5136	-0.0016752	-1.2532	-0.00059748	476.7681196045395	11.829	0.053186	11.829	11.778	11.831	0					4	2	2	0	0	0	0.66372	1	2363	2363		38.806	8.3025	1	92232			47490	2980	31545	31674	48088	48088					0.04731125223145227
VSTAKNLII	9	Unmodified	_VSTAKNLII_					0	0	0		tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.8001708984375	2	479.800217	957.585882	0.48262	0.00023156	-0.67776	-0.00032519	-0.19514	-9.3626E-05	479.7998849539298	23.608	0.21813	23.608	23.486	23.704	0					11	5	3	0	0	0	0.19605	1	7853	7853		62.107	0	1	562010			47491	22801	31546	31675	48089	48089					0.1053921748269886
VSTAPLHAVL	10	Unmodified	_VSTAPLHAVL_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2984924316406	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.102	1	32.102	31.602	32.602	0								0	0	0	0.40446	1	11129	11129		29.15	0	1				47492	11794	31547	31676	48090	48090					0.0781033333993264
VSTDPEQVAF	10	Unmodified	_VSTDPEQVAF_					0	0	0		ZNF135|p.T15A|1|0.31|ENSG00000176293|chr19:58061589-58061589|A/G|missense_variant	ZNF135|p.T15A|1|0.31|ENSG00000176293|chr19:58061589-58061589|A/G|missense_variant	ZNF135|p.T15A|1|0.31|ENSG00000176293|chr19:58061589-58061589|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7661743164062	2	546.764029	1091.5135	1.7019	0.00093056	-2.0285	-0.0011091	-0.32652	-0.00017853	546.7633807503132	41.597	0.25861	41.597	41.493	41.752	0					21	16	2	0	0	0	0.67098	1	13335	13335		25.574	0	1	53547			47493	23144	31548	31677	48091	48091					-0.02859161381525155
VSTEKTKG	8	Unmodified	_VSTEKTKG_					0	0	0			REV__nc|ENSG00000160710|P55265-3|ADAR	REV__nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	425.73870849609375	2	425.23745	848.460347	0.15235	6.4784E-05	-0.37359	-0.00015887	-0.22124	-9.4081E-05	425.2372546726563	17.664	0.24348	17.664	17.48	17.723	0					13	6	3	0	0	0	0.69548	1	4407	4407		34.173	6.2903	1	220710	+		47494	15760	31549	31678	48092	48092					0.030055056264700397
VSTGAVKLPS	10	Unmodified	_VSTGAVKLPS_					0	0	0		MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B;MROH2B|p.S691Lfs*6|1|0.45|ENSG00000171495|chr5:41038879-41038879|A/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.78216552734375	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.557	1	27.557	27.057	28.057	0								0	0	0	0.30854	1	9997	9997		49.536	0.094497	1				47495	6301	31550	31679	48093	48093					0.06902340586009359
VSTGFRGLGI	10	Unmodified	_VSTGFRGLGI_					0	0	0			REV__tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	REV__tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.78814697265625	2	503.787641	1005.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.638	1	21.638	21.138	22.138	0								0	0	0	0.29716	1	6307	6307		51.335	1.8939	1		+		47496	21750	31551	31680	48094	48094					0.058171626801254206
VSTGHATAL	9	Unmodified	_VSTGHATAL_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	428.730224609375	2	428.729792	855.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.527	1	21.527	21.027	22.027	0								0	0	0	0.1836	1	6195	6195		53.351	9.2347	1				47497	4655	31552	31681	48095	48095					0.011526388292622869
VSTGSKDVVR	10	Unmodified	_VSTGSKDVVR_					0	0	0		ENST00000528173.5_1_11:46400309-46400787:+|nuORF;ENST00000534802.1_1_11:46400234-46401494:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ	ENST00000528173.5_1_11:46400309-46400787:+|nuORF	ENST00000528173.5_1_11:46400309-46400787:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	349.8650207519531	3	349.864617	1046.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.214	1	19.214	18.714	19.714	0								0	0	0	0.4201	1	4928	4928		14.694	0	1				47498	4860	31553	31682	48096	48096					0.050599399836073644
VSTIKLGVD	9	Unmodified	_VSTIKLGVD_					0	0	0			REV__nc|ENSG00000166130|Q70UQ0-2|IKBIP	REV__nc|ENSG00000166130|Q70UQ0-2|IKBIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	466.2764892578125	2	466.276575	930.538597	0.66363	0.00030944	-0.89844	-0.00041892	-0.2348	-0.00010948	466.27614352520715	28.132	0.33566	28.132	27.996	28.331	0					21	7	4	0	0	0	0.27249	1	10284	10284		52.937	0	1	1766200	+		47499	21103	31554	31683	48097	48097					0.07054938211717854
VSTILTGLLS	10	Unmodified	_VSTILTGLLS_					0	0	0		ENST00000464036.5_1_1:1190585-1197670:-|nuORF;nc|ENSG00000160087|Q8N2K1-2|UBE2J2;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.3054504394531	2	502.305332	1002.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.733	1	54.733	54.233	55.233	0								0	0	0	0.32041	1	20843	20843		47.657	3.5405	1				47500	5339	31555	31684	48098	48098					0.09491780417295104
VSTLKKEL	8	Unmodified	_VSTLKKEL_					0	0	0		tr|U7SZN9|U7SZN9_FUSNUBifunctionalfolatesynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00813PE=3SV=1	REV__ENST00000487863.5_1_19:53057832-53058279:+|nuORF	REV__ENST00000487863.5_1_19:53057832-53058279:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.2865295410156	2	459.286943	916.559333	0.80433	0.00036942	-1.3374	-0.00061427	-0.53312	-0.00024486	459.2862490132323	27.887	0.22294	27.887	27.792	28.015	0					9	5	2	0	0	0	0.58597	1	9810	9810		51.335	1.8939	1	502470			47501	19684	31556	31685	48099	48099					0.09771528591375045
VSTLLSLGK	9	Unmodified	_VSTLLSLGK_					0	0	0		ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	459.2862243652344	2	459.286943	916.559333	-0.44476	-0.00020427	-1.9242	-0.00088378	-2.369	-0.001088	459.2860634218748	30.351	0.21242	30.351	30.245	30.458	0					6	4	2	0	0	0	0.41113	1	11239	11239		40.778	3.6191	1	185050			47502	5465	31557	31686	48100	48100					0.09771528591375045
VSTPSVMLK	9	Unmodified	_VSTPSVMLK_					0	0	0			REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.2721252441406	2	481.272978	960.531403	0.088148	4.2423E-05	-0.48834	-0.00023502	-0.40019	-0.0001926	481.2725405805543	28.596	0.1201	28.596	28.503	28.623	0					8	5	2	0	0	0	0.45358	1	8951	8951		37.159	2.9866	1	64292	+		47503	12760	31558	31687	48101	48101					0.049558823396409935
VSTPTPVG	8	Unmodified	_VSTPTPVG_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.2098693847656	2	379.208161	756.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.951	1	34.951	34.451	35.451	0								0	0	0	1.7419	1	12412	12412		35.201	0	1		+		47504	16193	31559	31688	48102	48102					0.013824490519937171
VSTPVTGHK	9	Unmodified	_VSTPVTGHK_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.25897216796875	2	463.258717	924.50288	-0.99842	-0.00046253	1.0155	0.00047044	0.017085	7.9146E-06	463.2591946584207	16.655	0.25939	16.655	16.497	16.757	0					12	5	3	0	0	0	0.53064	1	4767	4767		29.17	2.4771	1	162830			47505	4652	31560	31689	48103	48103					0.03760900754718932
VSTRINRQQ	9	Unmodified	_VSTRINRQQ_					0	0	0		NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant;nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant	NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.87432861328125	3	367.875628	1100.60505	0.76028	0.00027969	-3.0827	-0.0011341	-2.3225	-0.00085438	367.87461090344254	14.392	0.1281	14.392	14.338	14.467	0					5	3	2	0	0	0	0.38666	1	3501	3501		42.864	7.246	1	119050			47506	1718	31561	31690	48104	48104					0.058775668263251646
VSTRYGGL	8	Unmodified	_VSTRYGGL_					0	0	0			REV__WDFY2|p.A156V|1|0.39|ENSG00000139668|chr13:51719330-51719330|C/T|missense_variant	REV__WDFY2|p.A156V|1|0.39|ENSG00000139668|chr13:51719330-51719330|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	426.73211669921875	2	426.732335	851.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.989	1	14.989	14.489	15.489	0								0	0	0	1.7419	1	3179	3179		47.916	5.4411	1		+		47507	22284	31562	31691	48105	48105					0.018449426919119105
VSTTLTIK	8	Unmodified	_VSTTLTIK_					0	0	0		nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.7662048339844	2	431.765843	861.517133	0.9311	0.00040202	-0.20991	-9.063E-05	0.72119	0.00031139	431.7657805871069	18.313	0.1641	18.313	18.206	18.37	0					5	3	2	0	0	0	0.76283	1	5473	5473		25.45	1.2474	1	472170			47508	6663	31563	31692	48106	48106					0.08083553182996184
VSTTRSPGL	9	Unmodified	_VSTTRSPGL_					0	0	0			REV__ENST00000259006.7_2_17:61775212-61775701:-|nuORF	REV__ENST00000259006.7_2_17:61775212-61775701:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.25634765625	2	459.256174	916.497795	-0.93962	-0.00043152	0.17376	7.9798E-05	-0.76586	-0.00035173	459.2562776279612	27.415	0.31961	27.415	27.272	27.591	0					19	11	2	0	0	0	0.25716	1	8715	8715		54.776	0	1	378370	+		47509	18000	31564	31693	48107	48107					0.03620596892096728
VSTVAGALFAE	11	Unmodified	_VSTVAGALFAE_					0	0	0			REV__ENST00000468686.5_1_22:21984138-21984303:-|nuORF	REV__ENST00000468686.5_1_22:21984138-21984303:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.7865600585938	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.56	1	34.56	34.06	35.06	0								0	0	0	0.34425	1	11662	11662		45.972	1.8554	1		+		47510	15777	31565	31694	48108	48108					0.025740193778119647
VSTVGIDFK	9	Unmodified	_VSTVGIDFK_					0	0	0		ENSG00000169213|ENST00000371655|RAB3B;ENSG00000105514|ENST00000222120|RAB3D;ENSG00000105649|ENST00000222256|RAB3A;ENSG00000152932|ENST00000282878|RAB3C	ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2685546875	2	483.26875	964.522947	0.034133	1.6495E-05	0.28324	0.00013688	0.31737	0.00015337	483.26893501365646	36.064	0.12574	36.064	35.999	36.125	0					7	5	2	0	0	0	0.15558	1	11823	11823		60.118	0	1	73437			47511	2367	31566	31695	48109	48109					0.03926651694666816
VSTVPLGPY	9	Unmodified	_VSTVPLGPY_					0	0	0			REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.7575988769531	2	466.758018	931.501483	0.63887	0.0002982	-1.3707	-0.00063978	-0.73183	-0.00034159	466.75732089261805	42.579	1.0426	42.579	41.918	42.96	0					39	29	2	0	0	0	0.50461	1	17104	17104		31.955	1.4512	1	106200	+		47512	20392	31567	31696	48110	48110					0.032992666659424685
VSTVTPKQV	9	Unmodified	_VSTVTPKQV_					0	0	0			REV__ENST00000508531.1_1_4:95445006-95500681:+|nuORF	REV__ENST00000508531.1_1_4:95445006-95500681:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.78173828125	2	479.782025	957.549496	-0.48285	-0.00023167	-0.39527	-0.00018964	-0.87812	-0.00042131	479.7818314314364	26.21	0.30818	26.21	26.051	26.359	0					11	6	2	0	0	0	0.4966	1	9342	9342		32.812	0	1	413340	+		47513	19852	31568	31697	48111	48111					0.06902340586009359
VSTWVAAEI	9	Unmodified	_VSTWVAAEI_					0	0	0		ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.2589416503906	2	488.260925	974.507297	-1.2475	-0.00060912	-2.9588	-0.0014447	-4.2063	-0.0020538	488.25933799893215	18.286	0.10539	18.286	18.232	18.337	0					7	4	2	0	0	0	0.39215	1	4746	4746		42.396	8.2236	1	105600			47514	6320	31569	31698	48112	48112					0.01902365177613774
VSVACFDTL	9	Unmodified	_VSVACFDTL_					0	0	0		ENST00000478442.5_1_1:174843608-174846559:+|nuORF	ENST00000478442.5_1_1:174843608-174846559:+|nuORF	ENST00000478442.5_1_1:174843608-174846559:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.7348937988281	2	477.733686	953.452819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.379	1	24.379	23.879	24.879	0								0	0	0	0.1836	1	7455	7455		53.351	10.877	1				47515	9936	31570	31699	48113	48113					-0.02576969965457465
VSVAKTQPVV	10	Unmodified	_VSVAKTQPVV_					0	0	0		nc|ENSG00000047056|Q9Y2I8-3|WDR37;ENSG00000047056|ENST00000263150|WDR37;nc|ENSG00000047056|Q9Y2I8-2|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	343.54400634765625	3	343.209725	1026.60735	-0.75238	-0.00025822	0.9016	0.00030944	0.14922	5.1213E-05	343.20989625194323	25.062	0.4842	25.062	24.618	25.102	0					22	16	2	0	0	0	0.69166	1	7758	7758		21.686	0	1	97491			47516	1214	31571	31700	48114	48114					0.09510602511431898
VSVALVIQL	9	Unmodified	_VSVALVIQL_					0	0	0			REV__nc|ENSG00000188580|Q5VXU1-2|NKAIN2	REV__nc|ENSG00000188580|Q5VXU1-2|NKAIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.3047180175781	2	471.305136	940.595718	0.17871	8.4229E-05	-0.77674	-0.00036608	-0.59803	-0.00028185	471.30476731515296	38.332	0.36999	38.332	38.133	38.503	0					27	13	3	0	0	0	0.2873	1	14531	14531		51.335	7.2187	1	279770	+		47517	21168	31572	31701	48115	48115					0.12304405488100656
VSVALVIQL	9	Unmodified	_VSVALVIQL_					0	0	0			REV__nc|ENSG00000188580|Q5VXU1-2|NKAIN2	REV__nc|ENSG00000188580|Q5VXU1-2|NKAIN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.3044128417969	2	471.305136	940.595718	-0.587	-0.00027666	0.19913	9.3849E-05	-0.38787	-0.00018281	471.30521261191643	38.091	0.20524	38.091	37.976	38.181	0					13	11	2	0	0	0	0.45358	1	13626	13626		37.159	2.9866	1	66842	+		47518	21168	31572	31701	48116	48116					0.12304405488100656
VSVATGSFLI	10	Unmodified	_VSVATGSFLI_					0	0	0		ENST00000381844.8_1_2:9724788-9724914:-|nuORF	ENST00000381844.8_1_2:9724788-9724914:-|nuORF	ENST00000381844.8_1_2:9724788-9724914:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2840881347656	2	497.2844	992.554247	0.9944	0.0004945	-1.8474	-0.00091871	-0.85305	-0.00042421	497.2837238082177	39.917	0.23839	39.917	39.825	40.063	0					6	5	2	0	0	0	0.54197	1	15823	15823		40.778	4.3314	1	169940			47519	9118	31573	31702	48117	48117					0.057672247287769096
VSVDALNEI	9	Unmodified	_VSVDALNEI_					0	0	0			REV__ENST00000416785.1_1_6:28699967-28700618:+|nuORF	REV__ENST00000416785.1_1_6:28699967-28700618:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.2554016113281	2	480.25584	958.497126	0.032271	1.5498E-05	-0.19263	-9.2513E-05	-0.16036	-7.7014E-05	480.2557708999882	31.257	0.4259	31.257	31.095	31.521	0					38	17	3	0	0	0	0.26904	1	10001	10001		53.351	0	1	241770	+		47520	19036	31574	31703	48118	48118					0.01621757452392103
VSVDALNEI	9	Unmodified	_VSVDALNEI_					0	0	0			REV__ENST00000416785.1_1_6:28699967-28700618:+|nuORF	REV__ENST00000416785.1_1_6:28699967-28700618:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2557678222656	2	480.25584	958.497126	-0.30376	-0.00014588	-0.10549	-5.0662E-05	-0.40925	-0.00019655	480.2558423754555	31.333	0.40107	31.333	31.164	31.566	0					22	10	3	0	0	0	0.33044	1	10738	10738		47.657	0	1	321520	+		47521	19036	31574	31703	48119	48119					0.01621757452392103
VSVDKFTAM	9	Unmodified	_VSVDKFTAM_					0	0	0		nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195	nc|ENSG00000005801|O14628-5|ZNF195	nc|ENSG00000005801|O14628-5|ZNF195	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	333.17315673828125	3	333.172282	996.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.984	1	12.984	12.484	13.484	0								0	0	0	0.31623	1	2625	2625		24.519	1.4767	1				47522	11412	31575	31704	48120	48120					-0.003369945570625532
VSVEKIDLK	9	Unmodified	_VSVEKIDLK_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14;ZCCHC14|p.N110Mfs*18|1|0.34|ENSG00000140948|chr16:87433156-87433156|T/-|frameshift_variant	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2659301757812	2	515.810782	1029.60701	-0.074626	-3.8493E-05	1.3388	0.00069055	1.2641	0.00065206	515.8114594884917	36.803	0.28023	36.803	36.71	36.99	0					31	15	3	0	0	0	0.61124	1	12499	12499		25.574	0	1	375510			47523	4415	31576	31705	48121	48121					0.09339182791563871
VSVEVTLTRG	10	Unmodified	_VSVEVTLTRG_					0	0	0			REV__nc|ENSG00000112208|O95816-2|BAG2	REV__nc|ENSG00000112208|O95816-2|BAG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.8040161132812	2	530.803488	1059.59242	0.4164	0.00022103	0.50751	0.00026939	0.92391	0.00049042	530.8038327691432	27.322	0.13368	27.322	27.267	27.401	0					8	5	2	0	0	0	0.41335	1	8410	8410		54.776	1.8396	1	100740	+		47524	13993	31577	31706	48122	48122					0.0650111064342127
VSVHRHRH	8	Unmodified	_VSVHRHRH_					0	0	0		ENST00000578199.5_1_17:37851408-37864671:+|nuORF	ENST00000578199.5_1_17:37851408-37864671:+|nuORF	ENST00000578199.5_1_17:37851408-37864671:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.2860107421875	2	514.286466	1026.55838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.9	1	35.9	35.4	36.4	0								0	0	0	1.7419	1	13946	13946		28.254	1.5614	1				47525	10849	31578	31707	48123	48123					0.04616171785687584
VSVLEGRGRK	10	Unmodified	_VSVLEGRGRK_					0	0	0		ENST00000561309.1_1_15:65677198-65678348:-|nuORF	ENST00000561309.1_1_15:65677198-65678348:-|nuORF	ENST00000561309.1_1_15:65677198-65678348:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.5572814941406	3	367.556007	1099.64619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.698	1	38.698	38.198	39.198	0								0	0	0	0.38475	1	15193	15193		35.152	11.629	1				47526	10707	31579	31708	48124	48124					0.1003532786580763
VSVLKGQVYI	10	Unmodified	_VSVLKGQVYI_					0	0	0		ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.3336791992188	2	553.334424	1104.6543	-0.40087	-0.00022182	0.77524	0.00042896	0.37436	0.00020715	553.3346498625572	29.49	0.19867	29.49	29.393	29.592	0					15	7	3	0	0	0	0.65213	1	9595	9595		27.882	0	1	146010			47527	3660	31580	31709	48125	48125					0.10615462062582992
VSVNAATVKA	10	Unmodified	_VSVNAATVKA_					0	0	0			REV__LAMC1|p.A1158T|1|0.4|ENSG00000135862|chr1:183130535-183130535|G/A|missense_variant	REV__LAMC1|p.A1158T|1|0.4|ENSG00000135862|chr1:183130535-183130535|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.7802734375	2	480.279649	958.544745	-0.26674	-0.00012811	-0.12741	-6.1193E-05	-0.39415	-0.0001893	480.27952376993494	29.908	0.44781	29.908	29.718	30.166	0					39	17	3	0	0	0	0.68774	1	9716	9716		23.523	1.5628	1	303460	+		47528	20835	31581	31710	48126	48126					0.06381456443227762
VSVNGAVV	8	Unmodified	_VSVNGAVV_					0	0	0		ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	372.716064453125	2	372.716153	743.417754	0.25149	9.3736E-05	-0.47108	-0.00017558	-0.21959	-8.1844E-05	372.71598790227335	21.495	0.36898	21.495	21.424	21.793	0					12	7	3	0	0	0	0.49887	1	7144	7144		60.294	0	1	260380			47529	6737	31582	31711	48127	48127					0.035781552889034174
VSVNSFEKI	9	Unmodified	_VSVNSFEKI_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2	REV__ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.780029296875	2	511.779482	1021.54441	1.2363	0.00063273	-1.4241	-0.00072881	-0.18774	-9.6083E-05	511.7792499764983	34.843	0.31783	34.843	34.615	34.933	0					16	9	3	0	0	0	0.30841	1	13467	13467		49.536	0	1	269590	+		47530	13102	31583	31712	48128	48128					0.034500367233818
VSVPELKPE	9	Unmodified	_VSVPELKPE_					0	0	0		AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2815856933594	2	499.281857	996.549162	-0.73056	-0.00036476	0.65284	0.00032595	-0.077724	-3.8806E-05	499.2820621309753	29.315	0.35908	29.315	29.207	29.566	0					14	7	3	0	0	0	0.22837	1	10734	10734		60.972	0	1	730850			47531	99	31584	31713	48129	48129					0.050749208661500234
VSVPGSARP	9	Unmodified	_VSVPGSARP_					0	0	0			REV__ENST00000545888.6_1_12:57905867-57906065:+|nuORF	REV__ENST00000545888.6_1_12:57905867-57906065:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.2453918457031	2	435.245609	868.476666	0.67401	0.00029336	-1.5249	-0.00066371	-0.85091	-0.00037035	435.24503254053917	33.787	0.19525	33.787	33.698	33.893	0					10	5	2	0	0	0	0.22837	1	12520	12520		58.23	6.8945	1	255230	+		47532	20163	31585	31714	48130	48130					0.037166315832337204
VSVPQYFTNK	10	Unmodified	_VSVPQYFTNK_					0	0	0			REV__PIH1D2|p.I65Nfs*34|1|0.11|ENSG00000150773|chr11:112071742-112071743|-/T|frameshift_variant	REV__PIH1D2|p.I65Nfs*34|1|0.11|ENSG00000150773|chr11:112071742-112071743|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.2117004394531	3	394.876634	1181.60807	0.90176	0.00035608	-0.89011	-0.00035148	0.011651	4.6007E-06	395.21097638849716	23.842	0.4079	23.842	23.736	24.144	0					30	9	5	0	0	0	0.63019	1	7980	7980		30.569	0.25114	1	691160	+		47533	19963	31586	31715	48131	48131					0.02453397160456916
VSVPRVVKF	9	Unmodified	_VSVPRVVKF_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	344.21826171875	3	344.218443	1029.6335	0.68161	0.00023462	-0.57679	-0.00019854	0.10482	3.6081E-05	344.21820564586983	32.295	0.17001	32.295	32.223	32.393	0					7	4	2	0	0	0	0.5741	1	11861	11861		24.519	2.5593	1	90899			47534	11590	31587	31716	48132	48132					0.11986916473551901
VSVQCKPL	8	Carbamidomethyl (C)	_VSVQC(Carbamidomethyl (C))KPL_	VSVQC(1)KPL		VSVQC(48)KPL		0	1	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.7572937011719	2	465.757495	929.500437	0.47057	0.00021917	-1.3623	-0.00063452	-0.89178	-0.00041535	465.75692936545266	29.369	0.52847	29.369	28.968	29.496	0					27	13	3	0	0	0	0.60719	1	10435	10435		47.916	7.1374	1	915620			47535	3057	31588	31717	48133	48133	115				0.03286729025398927
VSVRGFPATEE	11	Unmodified	_VSVRGFPATEE_					0	0	0			REV__sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	REV__sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	596.3060913085938	2	596.303852	1190.59315	0.49175	0.00029323	3.0594	0.0018243	3.5512	0.0021176	596.3057740756866	23.645	0.46255	23.645	23.474	23.937	0					15	11	2	0	0	0	0.69524	1	7227	7227		28.081	7.2443	1	88809	+		47536	21590	31589	31718	48134	48134					0.0054790529247839
VSVRNPTLS	9	Unmodified	_VSVRNPTLS_					0	0	0			REV__ENST00000517490.5_1_8:87570674-87570737:+|nuORF	REV__ENST00000517490.5_1_8:87570674-87570737:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.77685546875	2	486.777274	971.539994	0.0039426	1.9191E-06	-0.13497	-6.5698E-05	-0.13102	-6.3779E-05	486.7770129506855	24.957	0.16698	24.957	24.82	24.987	0					9	5	3	0	0	0	0.59802	1	7434	7434		21.96	1.9631	1	81806	+		47537	19918	31590	31719	48135	48135					0.053085723004642205
VSVRYVSQT	9	Unmodified	_VSVRYVSQT_					0	0	0			REV__PCDHGA11|p.N380Kfs*10|1|0.29|ENSG00000253873|chr5:141422362-141422363|-/A|frameshift_variant	REV__PCDHGA11|p.N380Kfs*10|1|0.29|ENSG00000253873|chr5:141422362-141422363|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.8575134277344	3	346.857463	1037.55056	1.4612	0.00050684	-1.2149	-0.00042139	0.24637	8.5455E-05	346.85710056147946	20.972	0.61118	20.972	20.863	21.475	0					17	12	3	0	0	0	0.5741	1	6891	6891		25.126	0	1	3365400	+		47538	17739	31591	31720	48136	48136					0.0332855495489639
VSVSEKNGMQV	11	Unmodified	_VSVSEKNGMQV_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.P1126Qfs*8|1|0.11|ENSG00000065534|chr3:123700091-123700091|G/-|frameshift_variant;MYLK|p.R823Gfs*27|1|0.14|ENSG00000065534|chr3:123701002-123701002|C/-|frameshift_variant;ENST00000506361.5_1_3:123456168-123512688:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.2982788085938	2	589.297713	1176.58087	1.0196	0.00060086	-0.97749	-0.00057603	0.042136	2.483E-05	589.2973773420144	29.207	0.93781	29.207	28.968	29.906	0					62	23	4	0	0	0	0.55715	1	10512	10512		40.058	9.7405	1	807770			47539	1374	31592	31721	48137	48137					-0.0003545444224073435
VSVSGKACK	9	Unmodified	_VSVSGKACK_					0	0	0			REV__ENST00000367157.4_2_1:205272355-205272433:-|nuORF	REV__ENST00000367157.4_2_1:205272355-205272433:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	439.7408447265625	2	439.741845	877.469137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.961	1	23.961	23.461	24.461	0								0	0	0	0.30504	1	7397	7397		34.173	0.65696	1		+		47540	18594	31593	31722	48138	48138					0.025501559912868288
VSVSLFIRS	9	Unmodified	_VSVSLFIRS_					0	0	0		ENST00000525130.5_1_19:50310340-50310397:-|nuORF;nc|ENSG00000010361|Q9BT04-2|FUZ	ENST00000525130.5_1_19:50310340-50310397:-|nuORF	ENST00000525130.5_1_19:50310340-50310397:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.29852294921875	2	504.297842	1006.58113	-0.83444	-0.00042081	1.3257	0.00066853	0.49123	0.00024772	504.29877397001434	27.097	0.63456	27.097	26.866	27.501	0					31	22	2	0	0	0	0.50858	1	8545	8545		31.53	3.6476	1	70326			47541	10356	31594	31723	48139	48139					0.07810333339944009
VSVTFKELK	9	Unmodified	_VSVTFKELK_					0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8132934570312	2	525.813325	1049.6121	-1.2331	-0.0006484	1.8493	0.00097236	0.61611	0.00032396	525.8142956162299	34.269	0.19928	34.269	34.153	34.352	0					13	6	3	0	0	0	0.36135	1	12111	12111		37.812	6.2817	1	226120	+	+	47542	12602	31595	31724	48140	48140					0.08927486654192762
VSVTSEGIK	9	Unmodified	_VSVTSEGIK_					0	0	0		nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1	nc|ENSG00000151743|Q8IY45-2|AMN1	nc|ENSG00000151743|Q8IY45-2|AMN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.2583923339844	2	460.258382	918.502212	0.87089	0.00040083	0.0098934	4.5535E-06	0.88078	0.00040539	460.25862770069637	31.019	0.36276	31.019	30.763	31.126	0					16	7	3	0	0	0	0.12239	1	11542	11542		74.255	6.7614	1	1084900			47543	4983	31596	31725	48141	48141					0.039700613149989294
VSVVISELN	9	Unmodified	_VSVVISELN_					0	0	0		ENST00000532004.5_1_11:810000-812833:+|nuORF	ENST00000532004.5_1_11:810000-812833:+|nuORF	ENST00000532004.5_1_11:810000-812833:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.2743225097656	2	480.274032	958.533512	-0.30323	-0.00014563	-0.36749	-0.0001765	-0.67072	-0.00032213	480.2737701576772	33.777	0.54677	33.777	33.493	34.039	0					37	15	3	0	0	0	0.25716	1	11810	11810		54.776	0.053964	1	1807100			47544	10445	31597	31726	48142	48142					0.052586343490816034
VSVVSLIPPT	10	Unmodified	_VSVVSLIPPT_					0	0	0			REV__ENST00000374135.8_1_1:27205919-27206000:-|nuORF	REV__ENST00000374135.8_1_1:27205919-27206000:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	506.2609558105469	2	506.307875	1010.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.263	1	38.263	37.763	38.763	0								0	0	0	0.38797	1	14534	14534		34.173	0	1		+		47545	18692	31598	31727	48143	48143					0.0963208427989457
VSVYNQNK	8	Unmodified	_VSVYNQNK_					0	0	0		ESCO2|p.F86V|1|0.22|ENSG00000171320|chr8:27776564-27776564|T/G|missense_variant	ESCO2|p.F86V|1|0.22|ENSG00000171320|chr8:27776564-27776564|T/G|missense_variant	ESCO2|p.F86V|1|0.22|ENSG00000171320|chr8:27776564-27776564|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	476.2481994628906	2	476.248349	950.482145	-0.15607	-7.433E-05	-1.9845	-0.00094509	-2.1405	-0.0010194	476.2482925942704	19.711	0.1095	19.711	19.626	19.736	0					9	3	3	0	0	0	0.3961	1	5151	5151		71.296	0.47949	1	117520			47546	11119	31599	31728	48144	48144					0.004923103750456903
VSWGDGCAQK	10	Carbamidomethyl (C)	_VSWGDGC(Carbamidomethyl (C))AQK_	VSWGDGC(1)AQK		VSWGDGC(49)AQK		0	1	0		ENST00000463701.1_1_7:142459574-142460868:+|nuORF;ENSG00000204983|ENST00000311737|PRSS1;CON__P07477	ENST00000463701.1_1_7:142459574-142460868:+|nuORF	ENST00000463701.1_1_7:142459574-142460868:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.2487182617188	2	554.248023	1106.48149	0.60577	0.00033575	-0.32325	-0.00017916	0.28252	0.00015659	554.2477396742867	14.575	0.29372	14.575	14.483	14.777	0					19	7	5	0	0	0	0.46215	1	3586	3586		49.442	8.6634	1	2391500		+	47547	634	31600	31729	48145	48145	19				-0.06748852336318123
VSWTVPAVA	9	Unmodified	_VSWTVPAVA_					0	0	0			REV__ENSG00000138172|ENST00000260743|CALHM2	REV__ENSG00000138172|ENST00000260743|CALHM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.255859375	2	465.258185	928.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.938	1	23.938	23.438	24.438	0								0	0	0	0.28164	1	7386	7386		38.806	5.2906	1		+		47548	14962	31601	31730	48146	48146					0.034706863857991266
VSWVLCPR	8	Unmodified	_VSWVLCPR_					0	0	0		ENST00000585047.5_1_17:38218205-38233770:+|nuORF;ENST00000577486.1_1_17:38228403-38233770:+|nuORF;ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000585047.5_1_17:38218205-38233770:+|nuORF	ENST00000585047.5_1_17:38218205-38233770:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2611999511719	2	480.260205	958.505857	-0.11092	-5.327E-05	1.6276	0.00078169	1.5167	0.00072842	480.2613088775376	32.052	0.19688	32.052	31.961	32.157	0					8	4	3	0	0	0	0.60719	1	12159	12159		47.916	0.25827	1	95325			47549	10841	31602	31731	48147	48147					0.024944526078684248
VSYFSPKEL	9	Unmodified	_VSYFSPKEL_					0	0	0		ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.3043823242188	2	535.281857	1068.54916	-0.6087	-0.00032583	-2.774	-0.0014849	-3.3827	-0.0018107	535.2803413988617	21.603	0.13218	21.603	21.546	21.678	0					8	4	2	0	0	0	0.41113	1	6211	6211		40.778	6.6056	1	378930			47550	1329	31603	31732	48148	48148					0.017629208661446683
VSYGEGKAL	9	Unmodified	_VSYGEGKAL_					0	0	0		ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.24493408203125	2	462.245275	922.475997	0.71109	0.0003287	-0.94839	-0.00043839	-0.2373	-0.00010969	462.2447193794574	26.209	0.25574	26.209	26.042	26.298	0					11	6	3	0	0	0	0.30841	1	9027	9027		49.536	0.094497	1	259840			47551	6854	31604	31733	48149	48149					0.011657921435130447
VSYGEGKAL	9	Unmodified	_VSYGEGKAL_					0	0	0		ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	462.2452087402344	2	462.245275	922.475997	-0.79749	-0.00036863	-0.052841	-2.4426E-05	-0.85033	-0.00039306	462.24521173937427	25.971	0.27288	25.971	25.76	26.033	0					9	5	3	0	0	0	0.42902	1	8121	8121		39.253	2.0937	1	63553			47552	6854	31604	31733	48150	48150					0.011657921435130447
VSYIRSQTTG	10	Unmodified	_VSYIRSQTTG_					0	0	0			REV__ENST00000290158.8_1_17:45755717-45757437:+|nuORF	REV__ENST00000290158.8_1_17:45755717-45757437:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	556.2935180664062	2	556.290745	1110.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.526	1	42.526	42.026	43.026	0								0	0	0	0.17308	1	16977	16977		67.494	6.5217	1		+		47553	18153	31605	31734	48151	48151					0.01607636120979805
VSYLHPLPS	9	Unmodified	_VSYLHPLPS_					0	0	0			REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant	REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	337.8537292480469	3	338.18692	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.606	1	12.606	12.106	13.106	0								0	0	0	0.35899	1	2879	2879		23.523	6.0547	1		+		47554	13237	31606	31735	48152	48152					0.03362357931564475
VSYPGTLLTQ	10	Unmodified	_VSYPGTLLTQ_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7947998046875	2	539.792589	1077.57063	0.67505	0.00036439	2.1367	0.0011534	2.8117	0.0015178	539.7944950301951	32.632	0.21458	32.632	32.523	32.737	0					9	4	3	0	0	0	0.11308	1	12332	12332		93.143	8.3259	1	349550	+		47555	13274	31607	31736	48153	48153					0.03494305894855643
VSYRADGL	8	Unmodified	_VSYRADGL_					0	0	0		nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-3|TRIO	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.7294616699219	2	440.729792	879.445031	0.29062	0.00012809	-0.90089	-0.00039705	-0.61027	-0.00026897	440.72953762545495	23.898	0.20886	23.898	23.827	24.036	0					12	7	2	0	0	0	0.72381	1	6987	6987		30.504	1.3541	1	72703			47556	11422	31608	31737	48154	48154					0.00048638829287028784
VSYSHIQSK	9	Unmodified	_VSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.775146484375	2	524.774731	1047.53491	0.69231	0.00036331	-0.10428	-5.4724E-05	0.58803	0.00030858	524.7746571053332	18.066	0.22147	18.066	17.988	18.209	0					18	7	4	0	0	0	0.00065248	1	4443	4443		186.41	76.932	1	1443200			47557	1224	31609	31738	48155	48155					0.013042684378433478
VSYSHIQSK	9	Unmodified	_VSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7747192382812	2	524.774731	1047.53491	0.094271	4.9471E-05	0.084727	4.4463E-05	0.179	9.3934E-05	524.7747905610137	18.378	0.52045	18.378	18.282	18.803	0					26	12	3	0	0	0	0.0030642	1	5373	5373		168.26	61.251	1	10862000			47558	1224	31609	31738	48156	48156					0.013042684378433478
VSYSHIQSK	9	Unmodified	_VSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	350.185546875	3	350.185579	1047.53491	0.49682	0.00017398	-0.57227	-0.0002004	-0.075451	-2.6422E-05	350.18540635127624	18.378	0.27732	18.378	18.282	18.559	0					15	6	4	0	0	0	0.50858	1	5374	5374		38.754	24.06	1	1544400			47559	1224	31609	31738	48157	48157					0.013042684378433478
VSYSHIQSK	9	Unmodified	_VSYSHIQSK_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-4|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7750854492188	2	524.774731	1047.53491	0.58082	0.0003048	-0.18983	-9.9617E-05	0.39099	0.00020518	524.7746428466476	18.096	0.15838	18.096	18.026	18.185	0					16	5	4	0	0	0	4.3686E-13	1	4662	4662		233.57	109.48	1	2002200			47560	1224	31609	31738	48158	48158					0.013042684378433478
VSYTRSVTL	9	Unmodified	_VSYTRSVTL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	513.2853393554688	2	513.284931	1024.55531	-0.0099511	-5.1077E-06	0.48497	0.00024893	0.47502	0.00024382	513.2851801979589	32.07	0.13593	32.07	32.015	32.151	0					12	5	3	0	0	0	0.21263	1	10347	10347		60.118	20.865	1	93994			47561	11803	31610	31739	48159	48159					0.04401439097682669
VSYTRSVTL	9	Unmodified	_VSYTRSVTL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2855224609375	2	513.284931	1024.55531	0.013454	6.9055E-06	0.45573	0.00023392	0.46918	0.00024082	513.285257695463	32.373	0.37395	32.373	32.251	32.625	0					15	9	3	0	0	0	0.22837	1	11887	11887		58.23	10.573	1	361860			47562	11803	31610	31739	48160	48160					0.04401439097682669
VSYTRSVTL	9	Unmodified	_VSYTRSVTL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.78564453125	2	513.284931	1024.55531	-0.074017	-3.7992E-05	-0.4403	-0.000226	-0.51432	-0.00026399	513.284744104735	32.136	0.10233	32.136	32.084	32.186	0					8	4	2	0	0	0	0.37744	1	10700	10700		43.651	10.838	1	58416			47563	11803	31610	31739	48161	48161					0.04401439097682669
VSYTRSVTL	9	Unmodified	_VSYTRSVTL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2847900390625	2	513.284931	1024.55531	-0.46829	-0.00024036	0.59066	0.00030318	0.12238	6.2814E-05	513.2851061312366	32.314	0.23867	32.314	32.208	32.447	0					11	5	3	0	0	0	0.047855	1	12277	12277		96.034	21.779	1	393830			47564	11803	31610	31739	48162	48162					0.04401439097682669
VSYVEVVKK	9	Unmodified	_VSYVEVVKK_					0	0	0		nc|ENSG00000154556|O94875-9|SORBS2;nc|ENSG00000154556|O94875-5|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000154556|O94875-9|SORBS2	nc|ENSG00000154556|O94875-9|SORBS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.87799072265625	3	350.877975	1049.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.583	1	24.583	24.083	25.083	0								0	0	0	0.30009	1	7545	7545		35.152	4.8343	1				47565	5091	31611	31740	48163	48163					0.08927486654192762
VSYVEVVKK	9	Unmodified	_VSYVEVVKK_					0	0	0		nc|ENSG00000154556|O94875-9|SORBS2;nc|ENSG00000154556|O94875-5|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000154556|O94875-9|SORBS2	nc|ENSG00000154556|O94875-9|SORBS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.8778991699219	3	350.877975	1049.6121	0.32742	0.00011488	-0.37793	-0.00013261	-0.050511	-1.7723E-05	350.8778526733496	24.77	0.16158	24.77	24.712	24.873	0					8	3	3	0	0	0	0.13726	1	8717	8717		70.816	31.563	1	513560			47566	5091	31611	31740	48164	48164					0.08927486654192762
VSYVEVVKK	9	Unmodified	_VSYVEVVKK_					0	0	0		nc|ENSG00000154556|O94875-9|SORBS2;nc|ENSG00000154556|O94875-5|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000154556|O94875-9|SORBS2	nc|ENSG00000154556|O94875-9|SORBS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8778991699219	3	350.877975	1049.6121	-0.045892	-1.6102E-05	-0.11	-3.8597E-05	-0.15589	-5.47E-05	350.877924347434	24.731	0.11112	24.731	24.676	24.787	0					4	2	2	0	0	0	0.12834	1	8578	8578		72.879	32.101	1	825440			47567	5091	31611	31740	48165	48165					0.08927486654192762
VSYVRKVLQ	9	Unmodified	_VSYVRKVLQ_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.3324584960938	2	546.332216	1090.64988	-0.24657	-0.00013471	0.68543	0.00037447	0.43885	0.00023976	546.3326211692773	26.075	0.13247	26.075	26.015	26.148	0					6	4	2	0	0	0	0.16806	1	8148	8148		58.782	2.0609	1	55787			47568	5749	31612	31741	48166	48166					0.10817997639651367
VSYVRKVLQ	9	Unmodified	_VSYVRKVLQ_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.557373046875	3	364.557236	1090.64988	-0.10326	-3.7645E-05	0.18997	6.9256E-05	0.086712	3.1612E-05	364.55729195394525	26.122	0.18077	26.122	25.998	26.179	0					8	4	3	0	0	0	0.48389	1	8361	8361		34.173	1.3601	1	172630			47569	5749	31612	31741	48167	48167					0.10817997639651367
VSYVRKVLQ	9	Unmodified	_VSYVRKVLQ_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.5572814941406	3	364.557236	1090.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.136	1	26.136	25.636	26.636	0								0	0	0	0.27025	1	8371	8371		40.778	6.6056	1				47570	5749	31612	31741	48168	48168					0.10817997639651367
VTAAALYSVGC	11	Unmodified	_VTAAALYSVGC_					0	0	0			REV__nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000163635|O15265-3|ATXN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.2689208984375	2	527.765517	1053.51648	0.92986	0.00049075	0.47215	0.00024919	1.402	0.00073994	528.2670934559021	31.193	0.1397	31.193	31.141	31.281	0					5	3	2	0	0	0	0.56817	1	11752	11752		39.253	0.49923	1	49004	+		47571	15902	31613	31742	48169	48169					-0.008136095283589384
VTAAKKSQE	9	Unmodified	_VTAAKKSQE_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.26910400390625	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.571	1	13.571	13.071	14.071	0								0	0	0	0.1633	1	3181	3181		56.721	7.2795	1				47572	6942	31614	31743	48170	48170					0.04216866063575253
VTAAPSQPP	9	Unmodified	_VTAAPSQPP_					0	0	0		ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.23248291015625	2	434.232168	866.449782	-0.45029	-0.00019553	0.88033	0.00038227	0.43004	0.00018674	434.23245669759274	34.38	0.27749	34.38	34.274	34.552	0					11	7	2	0	0	0	0.16002	1	13244	13244		66.429	2.222	1	203300			47573	7359	31615	31744	48171	48171					0.011215229720505704
VTAAVERVK	9	Unmodified	_VTAAVERVK_					0	0	0			REV__ENST00000432615.5_1_7:158424360-158447416:-|nuORF	REV__ENST00000432615.5_1_7:158424360-158447416:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.86602783203125	3	324.86607	971.57638	0.53356	0.00017334	-0.47848	-0.00015544	0.055084	1.7895E-05	324.86591194170734	16.016	0.30759	16.016	15.886	16.194	0					20	7	4	0	0	0	0.24095	1	4261	4261		46.457	0	1	6302700	+		47574	15325	31616	31745	48172	48172					0.08945449197187827
VTAAVERVK	9	Unmodified	_VTAAVERVK_					0	0	0			REV__ENST00000432615.5_1_7:158424360-158447416:-|nuORF	REV__ENST00000432615.5_1_7:158424360-158447416:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	324.86602783203125	3	324.86607	971.57638	-0.70274	-0.0002283	0.33972	0.00011036	-0.36302	-0.00011793	324.86622255184136	15.745	0.12424	15.745	15.661	15.786	0					10	4	3	0	0	0	0.30951	1	3654	3654		40.058	0	1	635180	+		47575	15325	31616	31745	48173	48173					0.08945449197187827
VTAAVKSQG	9	Unmodified	_VTAAVKSQG_					0	0	0		ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	ENSG00000165476|ENST00000373758|REEP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	430.7451477050781	2	430.745442	859.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.322	1	18.322	17.822	18.822	0								0	0	0	0.22075	1	4765	4765		47.96	1.1931	1				47576	5801	31617	31746	48174	48174					0.04097211863393113
VTACLIAVAK	10	Unmodified	_VTACLIAVAK_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6;ENST00000561931.1_1_16:69060550-69117561:+|nuORF	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.79608154296875	2	494.79662	987.578688	-0.6458	-0.00031954	-2.1298	-0.0010538	-2.7756	-0.0013733	494.7958194790888	42.681	0.13365	42.681	42.592	42.725	0					5	3	2	0	0	0	0.55603	1	17057	17057		39.253	8.7492	1	50815			47577	2209	31618	31747	48175	48175					0.08440161610621999
VTADGALAMEK	11	Unmodified	_VTADGALAMEK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.2819213867188	2	553.281531	1104.54851	1.4222	0.00078686	-0.29196	-0.00016154	1.1302	0.00062532	553.2815260924176	29.519	0.10125	29.519	29.459	29.561	0					6	3	2	0	0	0	0.32196	1	9325	9325		60.167	0.2362	1	70487			47578	1299	31619	31748	48176	48176					0.000417581547935697
VTADGALAMEK	11	Unmodified	_VTADGALAMEK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.2824096679688	2	553.281531	1104.54851	1.821	0.0010075	-1.9954	-0.001104	-0.17438	-9.6484E-05	553.2811880407786	29.776	0.21123	29.776	29.694	29.906	0					10	5	3	0	0	0	0.41029	1	10700	10700		50.791	10.733	1	349330			47579	1299	31619	31748	48177	48177					0.000417581547935697
VTADGALAMEK	11	Unmodified	_VTADGALAMEK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.28173828125	2	553.281531	1104.54851	0.20489	0.00011336	0.21501	0.00011896	0.4199	0.00023232	553.2817254156415	29.541	0.19663	29.541	29.457	29.653	0					13	7	2	0	0	0	0.20372	1	9621	9621		73.841	22.313	1	203210			47580	1299	31619	31748	48178	48178					0.000417581547935697
VTADGALAMEK	11	Unmodified	_VTADGALAMEK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2821044921875	2	553.281531	1104.54851	1.6104	0.00089103	-1.6609	-0.00091894	-0.050454	-2.7915E-05	553.2810627543432	29.803	0.2657	29.803	29.65	29.916	0					15	5	4	0	0	0	3.1625E-08	1	11065	11065		197.79	82.898	1	930650			47581	1299	31619	31748	48179	48179					0.000417581547935697
VTADGALAMEK	11	Unmodified	_VTADGALAMEK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.282470703125	2	553.281531	1104.54851	1.1416	0.00063163	-0.28125	-0.00015561	0.86036	0.00047602	553.2815733701989	29.579	0.12594	29.579	29.502	29.628	0					8	3	3	0	0	0	0.067676	1	9961	9961		97.597	22.553	1	215250			47582	1299	31619	31748	48180	48180					0.000417581547935697
VTADGALAMEK	11	Unmodified	_VTADGALAMEK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.2821655273438	2	553.281531	1104.54851	-1.2092	-0.00066901	1.5964	0.00088324	0.38721	0.00021424	553.2827243856285	29.571	0.12629	29.571	29.489	29.616	0					6	3	2	0	0	0	0.12207	1	9971	9971		84.31	13.494	1	136840			47583	1299	31619	31748	48181	48181					0.000417581547935697
VTADGALAMEK	11	Unmodified	_VTADGALAMEK_					0	0	0		ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2816772460938	2	553.281531	1104.54851	1.8192	0.0010065	-1.7748	-0.00098199	0.044349	2.4538E-05	553.2807688983529	29.74	0.2129	29.74	29.633	29.846	0					11	4	3	0	0	0	1.9517E-05	1	10940	10940		173.24	81.97	1	1144400			47584	1299	31619	31748	48182	48182					0.000417581547935697
VTAEAAKPQ	9	Unmodified	_VTAEAAKPQ_					0	0	0			REV__nc|ENSG00000116580|Q3T8J9-3|GON4L	REV__nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7510070800781	2	457.750724	913.486896	-0.15208	-6.9615E-05	0.15048	6.8883E-05	-0.0015999	-7.3235E-07	457.7507386081973	33.632	0.2062	33.632	33.532	33.738	0					7	5	2	0	0	0	0.0792	1	12910	12910		84.916	20.708	1	108270	+		47585	14148	31620	31749	48183	48183					0.026691945178072274
VTAEEVLR	8	Unmodified	_VTAEEVLR_					0	0	0		TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant;ENSG00000181234|ENST00000435159|TMEM132C	TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant	TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	458.7577819824219	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.966	1	19.966	19.466	20.466	0								0	0	0	1.7419	1	5265	5265		24.203	1.1603	1				47586	6846	31621	31750	48184	48184					0.041414810348555875
VTAEIHTLGP	10	Unmodified	_VTAEIHTLGP_					0	0	0			REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	REV__UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	346.5256042480469	3	346.525713	1036.55531	-0.067512	-2.3395E-05	-0.18097	-6.2712E-05	-0.24849	-8.6106E-05	346.52560971037724	22.567	0.1475	22.567	22.471	22.618	0					5	3	2	0	0	0	0.69544	1	6757	6757		22.58	0.89391	1	139760	+		47587	14488	31622	31751	48185	48185					0.03849439097643881
VTAERLEP	8	Unmodified	_VTAERLEP_					0	0	0		ENST00000588559.5_1_19:55705613-55720813:-|nuORF;nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH;PTPRH|p.N460Kfs*60|1|0.11|ENSG00000080031|chr19:55200276-55200277|-/T|frameshift_variant	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	ENST00000588559.5_1_19:55705613-55720813:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7503662109375	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.495	1	33.495	32.995	33.995	0								0	0	0	1.7419	1	11761	11761		23.042	2.0956	1				47588	1635	31623	31752	48186	48186					0.02669194517818596
VTAGGGGLGL	10	Unmodified	_VTAGGGGLGL_					0	0	0			REV__ENST00000546378.1_1_12:54369508-54369550:+|nuORF	REV__ENST00000546378.1_1_12:54369508-54369550:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.2267761230469	2	401.226885	800.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.657	1	15.657	15.157	16.157	0								0	0	0	0.28441	1	4090	4090		53.351	3.9099	1		+		47589	20169	31624	31753	48187	48187					0.03101540317618401
VTAGGWRR	8	Unmodified	_VTAGGWRR_					0	0	0		ENST00000524669.5_1_11:57416309-57416543:-|nuORF	ENST00000524669.5_1_11:57416309-57416543:-|nuORF	ENST00000524669.5_1_11:57416309-57416543:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7505187988281	2	451.751393	901.488233	0.40851	0.00018454	-2.2806	-0.0010303	-1.8721	-0.00084572	451.7505599870714	15.763	0.10722	15.763	15.701	15.809	0					7	4	2	0	0	0	0.76283	1	3596	3596		25.45	0.93098	1	69383			47590	10346	31625	31754	48188	48188					0.033548733972338596
VTAIIGNVV	9	Unmodified	_VTAIIGNVV_					0	0	0			REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2738037109375	2	443.273835	884.533118	0.58167	0.00025784	-0.76086	-0.00033727	-0.17919	-7.9432E-05	443.27341265626205	37.036	0.25006	37.036	36.941	37.191	0					14	7	3	0	0	0	0.33044	1	14007	14007		47.657	8.4045	1	215950	+		47591	12667	31626	31755	48189	48189					0.08623259419903206
VTAIIQIK	8	Unmodified	_VTAIIQIK_					0	0	0			REV__TMC1|p.R100I|2|0.28|ENSG00000165091|chr9:72700580-72700580|G/T|missense_variant	REV__TMC1|p.R100I|2|0.28|ENSG00000165091|chr9:72700580-72700580|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.2920837402344	2	443.292028	884.569503	0.58212	0.00025805	-0.66789	-0.00029607	-0.085777	-3.8024E-05	443.29170895770295	39.007	0.22021	39.007	38.897	39.118	0					19	8	4	0	0	0	0.60719	1	14808	14808		47.916	0	1	308460	+		47592	21647	31627	31756	48190	48190					0.12260136316604076
VTAIVNKPL	9	Unmodified	_VTAIVNKPL_					0	0	0		ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.80242919921875	2	477.80276	953.590967	0.64809	0.00030966	0.38142	0.00018224	1.0295	0.0004919	477.8022116475558	40.115	0.3714	40.115	39.929	40.301	0					23	13	3	0	0	0	0.24095	1	15807	15807		56.721	14.325	1	126270			47593	2281	31628	31757	48191	48191					0.11231521345325746
VTAKDVTRESG	11	Unmodified	_VTAKDVTRESG_					0	0	0		nc|ENSG00000123505|P17707-2|AMD1;ENSG00000123505|ENST00000368885|AMD1	nc|ENSG00000123505|P17707-2|AMD1	nc|ENSG00000123505|P17707-2|AMD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.2084655761719	3	388.206932	1161.59897	3.2046	0.001244	0.85534	0.00033205	4.0599	0.0015761	388.20714492170504	23.454	0.75624	23.454	23.007	23.763	0					35	15	4	0	0	0	0.4771	1	7971	7971		45.908	4.828	1	1126300			47594	3326	31629	31758	48192	48192					0.024630038041323132
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	401.5777587890625	3	401.243206	1200.70779	0.6027	0.00024183	-0.66808	-0.00026806	-0.065378	-2.6232E-05	401.24289121879127	27.721	0.24205	27.721	27.614	27.856	0					16	7	3	0	0	0	0.00119	1	8573	8573		131.42	62.792	1	378040			47595	1248	31630	31759	48193	48193					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	601.3614501953125	2	601.36117	1200.70779	0.14303	8.6013E-05	0.13966	8.3985E-05	0.28269	0.00017	601.3612462224532	27.715	0.24697	27.715	27.635	27.882	0					19	7	4	0	0	0	0.0010753	1	8565	8565		126.03	43.275	1	983380			47596	1248	31630	31759	48194	48194					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.3612060546875	2	601.36117	1200.70779	-0.22754	-0.00013684	0.20217	0.00012158	-0.025376	-1.526E-05	601.361223659936	27.961	0.3025	27.961	27.862	28.165	0					27	7	5	0	0	0	8.4441E-06	1	9817	9817		163.84	70.695	1	7996800			47597	1248	31630	31759	48195	48195					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.3613891601562	2	601.36117	1200.70779	-0.58177	-0.00034986	0.95576	0.00057476	0.37399	0.0002249	601.3618945794793	27.71	0.15762	27.71	27.643	27.8	0					10	5	2	0	0	0	0.042733	1	8867	8867		100.82	45.735	1	169030			47598	1248	31630	31759	48196	48196					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.8634033203125	2	601.36117	1200.70779	0.31929	0.00019201	-0.29184	-0.0001755	0.027451	1.6508E-05	601.3609424317877	27.727	0.21759	27.727	27.631	27.849	0					20	7	4	0	0	0	0.22517	1	8849	8849		54.343	19.165	1	756830			47599	1248	31630	31759	48197	48197					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.2430725097656	3	401.243206	1200.70779	0.059112	2.3718E-05	-0.50105	-0.00020104	-0.44194	-0.00017733	401.24301685644735	27.972	0.39217	27.972	27.815	28.207	0					29	8	5	0	0	0	0.022049	1	10180	10180		119.03	56.862	1	15407000			47600	1248	31630	31759	48198	48198					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.362060546875	2	601.36117	1200.70779	1.5776	0.00094871	-1.24	-0.0007457	0.33759	0.00020301	601.3607814032853	27.968	0.16574	27.968	27.863	28.029	0					7	3	3	0	0	0	0.049609	1	10186	10186		107.45	57.421	1	175380			47601	1248	31630	31759	48199	48199					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.3615112304688	2	601.36117	1200.70779	0.89486	0.00053814	-0.39884	-0.00023985	0.49602	0.00029829	601.3608409384462	27.955	0.2946	27.955	27.846	28.141	0					15	6	3	0	0	0	7.4547E-05	1	10199	10199		141.91	56.75	1	1179900			47602	1248	31630	31759	48200	48200					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.3609008789062	2	601.36117	1200.70779	0.28324	0.00017033	0.12695	7.634E-05	0.41019	0.00024667	601.3612175780124	27.939	0.342	27.939	27.831	28.173	0					23	7	5	0	0	0	6.5586E-05	1	10168	10168		136.49	53.738	1	3712900			47603	1248	31630	31759	48201	48201					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	401.24322509765625	3	401.243206	1200.70779	0.16904	6.7824E-05	-0.24752	-9.9318E-05	-0.078489	-3.1493E-05	401.24308327838463	27.765	0.26907	27.765	27.671	27.94	0					12	6	2	0	0	0	0.10057	1	9116	9116		89.561	44.921	1	720090			47604	1248	31630	31759	48202	48202					0.1154621477442106
VTAKELSLVNK	11	Unmodified	_VTAKELSLVNK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.2430725097656	3	401.243206	1200.70779	-0.60393	-0.00024232	0.27687	0.00011109	-0.32707	-0.00013123	401.2433166546331	27.918	0.71443	27.918	27.763	28.478	0					38	14	5	0	0	0	0.060509	1	10036	10036		100.09	35.862	1	15612000			47605	1248	31630	31759	48203	48203					0.1154621477442106
VTAKMLTSV	9	Unmodified	_VTAKMLTSV_					0	0	0			REV__ENSG00000141698|ENST00000435506|NT5C3B	REV__ENSG00000141698|ENST00000435506|NT5C3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2731018066406	2	475.272978	948.531403	-0.11991	-5.699E-05	-0.63127	-0.00030003	-0.75118	-0.00035702	475.27258384081335	36.421	0.19598	36.421	36.324	36.52	0					8	5	2	0	0	0	0.24095	1	14200	14200		56.721	0	1	34122	+		47606	15130	31631	31760	48204	48204					0.055078823396456755
VTALPSGT	8	Unmodified	_VTALPSGT_					0	0	0			REV__ENST00000369393.7_1_6:90383888-90383960:-|nuORF	REV__ENST00000369393.7_1_6:90383888-90383960:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.210205078125	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.518	1	50.518	50.018	51.018	0								0	0	0	1.7419	1	18924	18924		40.573	7.057	1		+		47607	18621	31632	31761	48205	48205					0.019344490519983992
VTANTHGLWEV	11	Unmodified	_VTANTHGLWEV_					0	0	0			REV__nc|ENSG00000108231|O95970-2|LGI1	REV__nc|ENSG00000108231|O95970-2|LGI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.54364013671875	3	409.543655	1225.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.848	1	16.848	16.348	17.348	0								0	0	0	0.44646	1	4079	4079		23.378	4.1152	1		+		47608	13869	31633	31762	48206	48206					0.005356115293579933
VTAPGGHPR	9	Unmodified	_VTAPGGHPR_					0	0	0		PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant;PRRC2A|p.K1685Rfs*9|1|0.21|ENSG00000204469|chr6:31634864-31634864|C/-|frameshift_variant;PRRC2A|p.G1731Wfs*35|1|0.59|ENSG00000204469|chr6:31635155-31635156|-/C|frameshift_variant;PRRC2A|p.G1884Afs*12|1|0.18|ENSG00000204469|chr6:31636228-31636228|C/-|frameshift_variant;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.2439270019531	2	446.243401	890.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.111	1	15.111	14.611	15.611	0								0	0	0	0.1633	1	3383	3383		56.721	5.3856	1				47609	7704	31634	31763	48207	48207					0.022631671603221548
VTAPGGHPR	9	Unmodified	_VTAPGGHPR_					0	0	0		PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant;PRRC2A|p.K1685Rfs*9|1|0.21|ENSG00000204469|chr6:31634864-31634864|C/-|frameshift_variant;PRRC2A|p.G1731Wfs*35|1|0.59|ENSG00000204469|chr6:31635155-31635156|-/C|frameshift_variant;PRRC2A|p.G1884Afs*12|1|0.18|ENSG00000204469|chr6:31636228-31636228|C/-|frameshift_variant;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	446.24310302734375	2	446.243401	890.472249	0.58647	0.00026171	-1.4331	-0.00063951	-0.84662	-0.0003778	446.2427770231773	15.331	0.35419	15.331	15.13	15.484	0					15	7	3	0	0	0	0.17854	1	4183	4183		64.207	0.901	1	442840			47610	7704	31634	31763	48208	48208					0.022631671603221548
VTAPIALLK	9	Unmodified	_VTAPIALLK_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.30780029296875	2	463.307678	924.600803	0.76267	0.00035335	-0.55954	-0.00025924	0.20313	9.4111E-05	463.3073189711331	40.754	0.32921	40.754	40.656	40.985	0					7	5	2	0	0	0	0.12239	1	16218	16218		74.255	20.904	1	183330			47611	2246	31635	31764	48209	48209					0.13548709350709487
VTAPPARNR	9	Unmodified	_VTAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2829284667969	2	491.283057	980.551562	-0.52496	-0.0002579	0.27522	0.00013521	-0.24974	-0.00012269	491.2832348027995	14.953	1.4684	14.953	14.807	16.275	0					81	35	3	0	0	0	0.07136	1	3736	3736		87.696	13.441	1	3978900			47612	5543	31636	31765	48210	48210					0.06050814114462355
VTAPPARNR	9	Unmodified	_VTAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.283203125	2	491.283057	980.551562	-1.26	-0.00061903	1.2003	0.00058967	-0.059754	-2.9356E-05	491.28369276135504	14.683	0.90547	14.683	14.553	15.459	0					76	37	3	0	0	0	0.063823	2	3190	3190;3376		90.37	13.596	1	745300			47613	5543	31636	31765	48211;48212	48211					0.06050814114462355
VTASKIEL	8	Unmodified	_VTASKIEL_					0	0	0			REV__tr|U7T5L4|U7T5L4_FUSNUHeaddecorationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00097PE=4SV=1	REV__tr|U7T5L4|U7T5L4_FUSNUHeaddecorationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00097PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.7577819824219	2	430.758018	859.501483	-0.49855	-0.00021476	0.044204	1.9041E-05	-0.45435	-0.00019572	430.7580288714389	31.052	0.20471	31.052	30.997	31.202	0					6	4	2	0	0	0	0.57171	1	11687	11687		52.937	0	1	127530	+		47614	22184	31637	31766	48213	48213					0.06611266665947824
VTASSPVAVL	10	Unmodified	_VTASSPVAVL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.27728271484375	2	472.276575	942.538597	-0.023204	-1.0959E-05	0.59702	0.00028196	0.57381	0.000271	472.2767931523454	36.309	0.23298	36.309	36.22	36.452	0					17	12	2	0	0	0	0.20011	1	11897	11897		79.451	8.1553	1	167630			47615	11803	31638	31767	48214	48214					0.06502938211713172
VTATQLIQK	9	Unmodified	_VTATQLIQK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.302734375	2	501.303124	1000.5917	-0.044781	-2.2449E-05	-0.32042	-0.00016063	-0.3652	-0.00018308	501.30289153220986	29.186	0.22631	29.186	29.089	29.316	0					14	8	3	0	0	0	0.013878	1	9177	9177		132.76	3.3366	1	196820			47616	7578	31639	31768	48215	48215					0.09142315994381534
VTATQLIQK	9	Unmodified	_VTATQLIQK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.3030700683594	2	501.303124	1000.5917	-0.10859	-5.4439E-05	0.0019857	9.9543E-07	-0.10661	-5.3443E-05	501.30309602654785	29.443	0.26253	29.443	29.351	29.614	0					17	6	4	0	0	0	0.0080613	1	10521	10521		145.16	8.8875	1	1289700			47617	7578	31639	31768	48216	48216					0.09142315994381534
VTATQLIQK	9	Unmodified	_VTATQLIQK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.302978515625	2	501.303124	1000.5917	-0.96574	-0.00048413	0.35628	0.0001786	-0.60946	-0.00030553	501.30330670926	29.199	0.22794	29.199	29.107	29.335	0					22	9	3	0	0	0	0.04067	1	9467	9467		98.582	7.9811	1	424920			47618	7578	31639	31768	48217	48217					0.09142315994381534
VTATQLIQK	9	Unmodified	_VTATQLIQK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3030700683594	2	501.303124	1000.5917	0.14684	7.3613E-05	-0.71686	-0.00035936	-0.57002	-0.00028575	501.3029114972757	29.215	0.18051	29.215	29.17	29.351	0					9	4	3	0	0	0	0.020674	1	9807	9807		120.87	2.1254	1	348320			47619	7578	31639	31768	48218	48218					0.09142315994381534
VTATQLIQK	9	Unmodified	_VTATQLIQK_					0	0	0		LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3033142089844	2	501.303124	1000.5917	-2.1074	-0.0010564	1.8839	0.00094443	-0.22346	-0.00011202	501.30404008670837	29.249	0.24869	29.249	29.13	29.379	0					12	6	3	0	0	0	0.013878	1	9800	9800		132.76	8.6778	1	549960			47620	7578	31639	31768	48219	48219					0.09142315994381534
VTAVAEQYQP	10	Unmodified	_VTAVAEQYQP_					0	0	0			REV__PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	REV__PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.2819213867188	2	553.279846	1104.54514	3.6371	0.0020123	-0.40946	-0.00022655	3.2277	0.0017858	553.2799218209805	29.723	0.21319	29.723	29.617	29.83	0					15	4	5	0	0	0	0.23612	1	10934	10934		75.043	3.1658	1	1314900	+		47621	13434	31640	31769	48220	48220					-0.0029516862757645868
VTAVASLLK	9	Unmodified	_VTAVASLLK_					0	0	0		ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.28948974609375	2	451.289485	900.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.369	1	36.369	35.869	36.869	0								0	0	0	0.24544	1	14128	14128		44.377	0	1				47622	2137	31641	31770	48221	48221					0.11015832454006613
VTAVASQGRR	10	Unmodified	_VTAVASQGRR_					0	0	0		ENST00000453348.1_1_7:1778316-1778475:-|nuORF	ENST00000453348.1_1_7:1778316-1778475:-|nuORF	ENST00000453348.1_1_7:1778316-1778475:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.80029296875	2	522.799072	1043.58359	3.4079	0.0017817	-0.81159	-0.0004243	2.5964	0.0013574	522.7985026664043	35.304	0.46815	35.304	34.947	35.415	0					19	9	3	0	0	0	0.38194	1	13630	13630		58.23	58.23	1	1153900			47623	9664	31642	31771	48222	48222					0.06354181797610181
VTAVDTKRG	9	Unmodified	_VTAVDTKRG_					0	0	0		ENST00000591635.5_1_18:34124550-34298500:+|nuORF;FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant;FHOD3|p.P335Qfs*63|1|0.19|ENSG00000134775|chr18:36625553-36625554|CC/-|frameshift_variant;FHOD3|p.S336Vfs*138|7|0.27|ENSG00000134775|chr18:36625553-36625553|C/-|frameshift_variant;ENST00000589114.5_1_18:33877702-34289359:+|nuORF;FHOD3|p.E810Rfs*8|2|0.26|ENSG00000134775|chr18:36718298-36718298|G/-|frameshift_variant;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	ENST00000591635.5_1_18:34124550-34298500:+|nuORF	ENST00000591635.5_1_18:34124550-34298500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.76904296875	2	473.769448	945.524344	-2.5639	-0.0012147	1.5368	0.00072811	-1.027	-0.00048658	473.77034030118995	18.44	0.07831	18.44	18.398	18.476	0					6	2	3	0	0	0	0.53083	1	4816	4816		29.15	0	1	93892			47624	3940	31643	31772	48223	48223					0.04940285783436593
VTAVFLVTSG	10	Unmodified	_VTAVFLVTSG_					0	0	0		SLC44A5|p.A396V|1|0.31|ENSG00000137968|chr1:75219336-75219336|G/A|missense_variant	SLC44A5|p.A396V|1|0.31|ENSG00000137968|chr1:75219336-75219336|G/A|missense_variant	SLC44A5|p.A396V|1|0.31|ENSG00000137968|chr1:75219336-75219336|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2842102050781	2	497.2844	992.554247	0.78121	0.00038849	-1.4763	-0.00073412	-0.69504	-0.00034563	497.2836709757213	42.191	0.18076	42.191	42.108	42.289	0					19	8	3	0	0	0	0.49411	1	16551	16551		45.972	8.1607	1	207830			47625	22415	31644	31773	48224	48224					0.05767224728788278
VTAVLSGLPS	10	Unmodified	_VTAVLSGLPS_					0	0	0			REV__ENSG00000272674|ENST00000609684|PCDHB16	REV__ENSG00000272674|ENST00000609684|PCDHB16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.2765197753906	2	472.276575	942.538597	-0.12316	-5.8166E-05	-0.45504	-0.0002149	-0.5782	-0.00027307	472.2763728919886	36.575	0.25759	36.575	36.472	36.729	0					12	7	2	0	0	0	0.081767	1	14248	14248		98.629	25.75	1	496440	+		47626	17814	31645	31774	48225	48225					0.06502938211713172
VTAVMVLTK	9	Oxidation (M)	_VTAVM(Oxidation (M))VLTK_		VTAVM(1)VLTK		VTAVM(88)VLTK	0	0	1			REV__MYBL1|p.N420Tfs*13|1|0.23|ENSG00000185697|chr8:66576218-66576218|T/-|frameshift_variant	REV__MYBL1|p.N420Tfs*13|1|0.23|ENSG00000185697|chr8:66576218-66576218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.28887939453125	2	489.288628	976.562703	-0.074773	-3.6586E-05	-1.4208	-0.00069516	-1.4955	-0.00073175	489.28801473366866	39.376	0.21438	39.376	39.286	39.5	0					11	7	3	0	0	0	0.07136	1	15477	15477		87.696	13.441	1	260080	+		47627	20905	31646	31775	48226	48226		747			0.07348455373733032
VTAVNLVLL	9	Unmodified	_VTAVNLVLL_					0	0	0		COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant	COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant	COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.305419921875	2	471.305136	940.595718	-0.12413	-5.8504E-05	-0.33055	-0.00015579	-0.45468	-0.00021429	471.30489300584406	36.427	0.41095	36.427	36.214	36.625	0					28	11	3	0	0	0	0.13519	1	14135	14135		71.296	13.484	1	587420			47628	600	31647	31776	48227	48227					0.12304405488100656
VTAVPTLLK	9	Unmodified	_VTAVPTLLK_					0	0	0		ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.3052978515625	2	471.305136	940.595718	0.55338	0.00026081	-0.11901	-5.6088E-05	0.43437	0.00020472	471.30506691073293	36.438	0.29577	36.438	36.329	36.625	0					19	8	3	0	0	0	0.15163	1	13735	13735		67.494	1.0644	1	237790			47629	3587	31648	31777	48228	48228					0.12304405488112025
VTAVPTLLK	9	Unmodified	_VTAVPTLLK_					0	0	0		ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.3054504394531	2	471.305136	940.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.159	1	36.159	35.659	36.659	0								0	0	0	0.10826	1	12249	12249		69.628	8.6557	1				47630	3587	31648	31777	48229	48229					0.12304405488112025
VTAVPTLLK	9	Unmodified	_VTAVPTLLK_					0	0	0		ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.3056640625	2	471.305136	940.595718	-0.19188	-9.0432E-05	0.682	0.00032143	0.49013	0.000231	471.30539585530136	36.236	0.16615	36.236	36.142	36.308	0					9	6	2	0	0	0	0.19605	1	12958	12958		62.107	1.1355	1	61290			47631	3587	31648	31777	48230	48230					0.12304405488112025
VTAVPTLLK	9	Unmodified	_VTAVPTLLK_					0	0	0		ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	ENST00000571029.1_1_17:6544987-6546336:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.30499267578125	2	471.305136	940.595718	-0.55292	-0.00026059	-0.14981	-7.0604E-05	-0.70272	-0.0003312	471.30502040867214	36.388	0.46377	36.388	36.132	36.596	0					20	9	3	0	0	0	0.07136	1	14102	14102		87.696	16.401	1	463120			47632	3587	31648	31777	48231	48231					0.12304405488112025
VTCENFISK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))ENFISK_	VTC(1)ENFISK		VTC(65)ENFISK		0	1	0		ENSG00000124177|ENST00000373233|CHD6;CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.268310546875	2	549.268424	1096.5223	1.8415	0.0010115	-1.961	-0.0010771	-0.11948	-6.5627E-05	549.2675388069633	28.579	0.20801	28.579	28.447	28.655	0					8	5	2	0	0	0	0.16806	1	10123	10123		65.465	14.273	1	202400			47633	3352	31649	31778	48232	48232	133				-0.022105110167103703
VTCFVAALQI	10	Unmodified	_VTCFVAALQI_					0	0	0			REV__ENST00000265062.7_1_3:128533000-128533144:+|nuORF	REV__ENST00000265062.7_1_3:128533000-128533144:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	532.796630859375	2	532.794078	1063.5736	1.0194	0.00054315	3.9766	0.0021187	4.9961	0.0026619	532.7958577154154	41.026	0.14846	41.026	40.976	41.124	0					13	9	2	0	0	0	0.60076	1	13189	13189		34.173	0.65696	1	40051	+		47634	18069	31650	31779	48233	48233					0.04435857748012495
VTCGPPDTIV	10	Unmodified	_VTCGPPDTIV_					0	0	0		UNC5D|p.M610T|1|0.29|ENSG00000156687|chr8:35748589-35748589|T/C|missense_variant	UNC5D|p.M610T|1|0.29|ENSG00000156687|chr8:35748589-35748589|T/C|missense_variant	UNC5D|p.M610T|1|0.29|ENSG00000156687|chr8:35748589-35748589|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.25030517578125	2	501.252243	1000.48993	-0.97141	-0.00048692	-1.7092	-0.00085673	-2.6806	-0.0013436	501.25141127130746	40.065	0.073082	40.065	40.024	40.097	0					7	4	2	0	0	0	0.51121	1	13437	13437		44.117	6.9577	1	48981			47635	23090	31651	31780	48234	48234					-0.010292984197008082
VTCNFIILR	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))NFIILR_	VTC(1)NFIILR		VTC(130)NFIILR		0	1	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.3192749023438	2	568.318251	1134.62195	1.6547	0.00094038	-0.45678	-0.0002596	1.1979	0.00068078	568.3178601074941	42.958	0.15479	42.958	42.839	42.994	0					12	5	3	0	0	0	0.012936	1	17156	17156		134.77	52.525	1	180850			47636	7845	31652	31781	48235	48235	339				0.060023513879059465
VTCPGVVLK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))PGVVLK_	VTC(1)PGVVLK		VTC(77)PGVVLK		0	1	0		ENST00000463938.5_1_1:48878802-48937680:-|nuORF;nc|ENSG00000132122|Q9NWH7-2|SPATA6;ENSG00000132122|ENST00000371847|SPATA6	ENST00000463938.5_1_1:48878802-48937680:-|nuORF	ENST00000463938.5_1_1:48878802-48937680:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.78094482421875	2	486.78097	971.547388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.562	1	28.562	28.062	29.062	0								0	0	0	0.082437	1	10478	10478		76.774	7.1465	1				47637	3760	31653	31782	48236	48236	163				0.06047588576552698
VTCPGVVLK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))PGVVLK_	VTC(1)PGVVLK		VTC(85)PGVVLK		0	1	0		ENST00000463938.5_1_1:48878802-48937680:-|nuORF;nc|ENSG00000132122|Q9NWH7-2|SPATA6;ENSG00000132122|ENST00000371847|SPATA6	ENST00000463938.5_1_1:48878802-48937680:-|nuORF	ENST00000463938.5_1_1:48878802-48937680:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.7806701660156	2	486.78097	971.547388	-0.54629	-0.00026592	1.8828	0.00091652	1.3365	0.0006506	486.781906875385	28.518	0.11668	28.518	28.409	28.526	0					4	2	2	0	0	0	0.0792	1	10332	10332		84.916	22.808	1	538720			47638	3760	31653	31782	48237	48237	163				0.06047588576552698
VTCSQVHFK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))SQVHFK_	VTC(1)SQVHFK		VTC(75)SQVHFK		0	1	0		nc|ENSG00000174442|Q9H900-2|ZWILCH;ENSG00000174442|ENST00000307897|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	553.2769775390625	2	553.276583	1104.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.139	1	21.139	20.639	21.639	0								0	0	0	0.088368	1	5774	5774		75.043	29.071	1				47639	6488	31654	31783	48238	48238	277				-0.009473850599533762
VTCSQVHFK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))SQVHFK_	VTC(1)SQVHFK		VTC(46)SQVHFK		0	1	0		nc|ENSG00000174442|Q9H900-2|ZWILCH;ENSG00000174442|ENST00000307897|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	369.1866760253906	3	369.186814	1104.53861	0.76781	0.00028346	-1.1667	-0.00043073	-0.39889	-0.00014727	369.18650008647444	21.479	0.31808	21.479	21.392	21.71	0					19	7	5	0	0	0	0.34452	1	6827	6827		46.457	11.305	1	2467000			47640	6488	31654	31783	48239	48239	277				-0.009473850599533762
VTCSQVHFK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))SQVHFK_	VTC(1)SQVHFK		VTC(94)SQVHFK		0	1	0		nc|ENSG00000174442|Q9H900-2|ZWILCH;ENSG00000174442|ENST00000307897|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.27685546875	2	553.276583	1104.53861	0.623	0.00034469	-0.35253	-0.00019505	0.27048	0.00014965	553.2766184824428	21.47	0.23078	21.47	21.38	21.61	0					14	5	4	0	0	0	0.054723	1	6833	6833		93.598	34.816	1	1365200			47641	6488	31654	31783	48240	48240	277				-0.009473850599533762
VTCSQVHFK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))SQVHFK_	VTC(1)SQVHFK		VTC(91)SQVHFK		0	1	0		nc|ENSG00000174442|Q9H900-2|ZWILCH;ENSG00000174442|ENST00000307897|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	553.2767944335938	2	553.276583	1104.53861	-0.40012	-0.00022138	0.62986	0.00034849	0.22974	0.00012711	553.2771650907428	21.19	0.14165	21.19	21.112	21.254	0					11	4	3	0	0	0	0.063171	1	6032	6032		90.601	41.065	1	338070			47642	6488	31654	31783	48241	48241	277				-0.009473850599533762
VTCSQVHFK	9	Carbamidomethyl (C)	_VTC(Carbamidomethyl (C))SQVHFK_	VTC(1)SQVHFK		VTC(140)SQVHFK		0	1	0		nc|ENSG00000174442|Q9H900-2|ZWILCH;ENSG00000174442|ENST00000307897|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.2769775390625	2	553.276583	1104.53861	0.031381	1.7362E-05	0.19682	0.0001089	0.2282	0.00012626	553.2769736414679	21.349	0.31793	21.349	21.24	21.558	0					15	6	4	0	0	0	0.011389	1	7077	7077		138.06	53.147	1	1527600			47643	6488	31654	31783	48242	48242	277				-0.009473850599533762
VTCSVRLL	8	Unmodified	_VTCSVRLL_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.7597351074219	2	445.760038	889.505523	-0.17325	-7.7229E-05	-3.4629	-0.0015436	-3.6361	-0.0016208	445.7585508098567	29.482	0.3492	29.482	29.334	29.683	0					13	7	2	0	0	0	0.67394	1	11002	11002		37.159	3.6435	1	164540	+		47644	16789	31655	31784	48243	48243					0.05635032888005753
VTDDAMQSI	9	Unmodified	_VTDDAMQSI_					0	0	0			REV__nc|ENSG00000148187|Q96E11-8|MRRF	REV__nc|ENSG00000148187|Q96E11-8|MRRF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2240295410156	2	490.223682	978.432811	0.60056	0.00029441	-0.71837	-0.00035216	-0.11781	-5.7754E-05	490.2233086165533	32.192	0.21531	32.192	32.088	32.303	0					10	6	2	0	0	0	0.10915	1	11147	11147		77.318	0	1	120580	+		47645	15373	31656	31785	48244	48244					-0.057267656960675595
VTDDSPPSKK	10	Unmodified	_VTDDSPPSKK_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2771606445312	2	537.277303	1072.54005	0.2177	0.00011697	-2.0562	-0.0011048	-1.8385	-0.00098779	537.2773864944583	13.692	0.45303	13.692	13.367	13.82	0					24	12	4	0	0	0	0.36647	1	3147	3147		59.931	3.497	1	557650			47646	1373;22485	31657	31786	48245	48245					0.006685275098107013
VTDDSPPSKK	10	Unmodified	_VTDDSPPSKK_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2777099609375	2	537.277303	1072.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.622	1	13.622	13.122	14.122	0								0	0	0	0.021408	1	3205	3205		98.582	31.088	1				47647	1373;22485	31657	31786	48246	48246					0.006685275098107013
VTDETFLEK	9	Unmodified	_VTDETFLEK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2745361328125	2	541.274229	1080.53391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.165	1	32.165	31.665	32.665	0								0	0	0	0.15687	1	10383	10383		58.23	1.5089	1				47648	3556	31658	31787	48247	48247					-0.0031399072172462184
VTDETFLEK	9	Unmodified	_VTDETFLEK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2745361328125	2	541.274229	1080.53391	1.894	0.0010252	2.5964	0.0014054	4.4904	0.0024306	541.2750873365128	32.533	0.53461	32.533	32.342	32.876	0					23	13	3	0	0	0	0.3269	1	11918	11918		47.96	0.30219	1	290480			47649	3556	31658	31787	48248	48248					-0.0031399072172462184
VTDETFLEK	9	Unmodified	_VTDETFLEK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2741088867188	2	541.274229	1080.53391	1.0449	0.0005656	-0.74297	-0.00040215	0.30198	0.00016345	541.2742244908579	32.22	0.10961	32.22	32.14	32.25	0					5	3	2	0	0	0	0.17854	1	11188	11188		64.207	3.2353	1	37883			47650	3556	31658	31787	48249	48249					-0.0031399072172462184
VTDETFLEK	9	Unmodified	_VTDETFLEK_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.274658203125	2	541.274229	1080.53391	0.64968	0.00035166	0.70998	0.00038429	1.3597	0.00073595	541.2743577705176	32.379	0.32018	32.379	32.27	32.59	0					8	6	2	0	0	0	0.22837	1	12217	12217		58.23	15.834	1	201710			47651	3556	31658	31787	48250	48250					-0.0031399072172462184
VTDFVLLGF	9	Unmodified	_VTDFVLLGF_					0	0	0		nc|ENSG00000254769|Q8NGN8|OR4A4P;OR4A47|p.C177Lfs*2|1|0.28|ENSG00000237388|chr11:48489313-48489314|-/T|frameshift_variant;ENSG00000237388|ENST00000446524|OR4A47	nc|ENSG00000254769|Q8NGN8|OR4A4P	nc|ENSG00000254769|Q8NGN8|OR4A4P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.7796936035156	2	505.781493	1009.54843	-1.9715	-0.00099716	-2.6627	-0.0013468	-4.6343	-0.0023439	505.780262164884	35.214	0.16088	35.214	35.141	35.302	0					8	5	2	0	0	0	0.41354	1	12536	12536		40.573	6.651	1	43465			47652	11791	31659	31788	48251	48251					0.04404126217104931
VTDGAILGK	9	Unmodified	_VTDGAILGK_					0	0	0		KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.2552490234375	2	437.255643	872.496732	-0.40851	-0.00017862	-0.62868	-0.0002749	-1.0372	-0.00045352	437.255384934411	26.736	0.16667	26.736	26.628	26.795	0					5	3	2	0	0	0	0.44593	1	9595	9595		37.812	2.1932	1	182060			47653	1282	31660	31789	48252	48252					0.05538382523195651
VTDGAILGK	9	Unmodified	_VTDGAILGK_					0	0	0		KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2553405761719	2	437.255643	872.496732	-0.5589	-0.00024438	-0.34741	-0.00015191	-0.90631	-0.00039629	437.25524760479465	31.877	0.21546	31.877	31.768	31.984	0					6	4	2	0	0	0	0.21263	1	11977	11977		60.118	3.6845	1	222420			47654	1282	31660	31789	48253	48253					0.05538382523195651
VTDGFSSLK	9	Unmodified	_VTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.25054931640625	2	477.250557	952.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.048	1	30.048	29.548	30.548	0								0	0	0	0.29356	1	9535	9535		36.447	2.2742	1				47655	2618	31661	31790	48254	48254					0.008417747979592605
VTDGFSSLK	9	Unmodified	_VTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2500305175781	2	477.250557	952.486562	0.39019	0.00018622	-0.31935	-0.00015241	0.070837	3.3807E-05	477.25032461926946	30.328	0.29186	30.328	30.206	30.498	0					17	7	3	0	0	0	0.10506	1	10916	10916		78.264	11.835	1	751270			47656	2618	31661	31790	48255	48255					0.008417747979592605
VTDGFSSLK	9	Unmodified	_VTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.2503967285156	2	477.250557	952.486562	0.64086	0.00030585	-0.683	-0.00032596	-0.042137	-2.011E-05	477.2501725152069	30.309	0.19472	30.309	30.221	30.416	0					10	4	3	0	0	0	0.070005	1	11330	11330		88.177	26.07	1	855190			47657	2618	31661	31790	48256	48256					0.008417747979592605
VTDGFSSLK	9	Unmodified	_VTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2499694824219	2	477.250557	952.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.108	1	30.108	29.608	30.608	0								0	0	0	0.29356	1	10212	10212		36.447	2.2742	1				47658	2618	31661	31790	48257	48257					0.008417747979592605
VTDGFSSLK	9	Unmodified	_VTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2500915527344	2	477.250557	952.486562	-0.34685	-0.00016554	-0.2344	-0.00011187	-0.58126	-0.0002774	477.25041952231805	30.079	0.21131	30.079	30.018	30.229	0					7	5	2	0	0	0	0.14578	1	10204	10204		68.846	4.6389	1	121230			47659	2618	31661	31790	48258	48258					0.008417747979592605
VTDGFSSLK	9	Unmodified	_VTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2503356933594	2	477.250557	952.486562	-0.6387	-0.00030482	0.49081	0.00023424	-0.14789	-7.0581E-05	477.2507548508661	30.253	0.31151	30.253	30.048	30.359	0					12	6	3	0	0	0	0.078509	1	11188	11188		85.161	16.374	1	364980			47660	2618	31661	31790	48259	48259					0.008417747979592605
VTDGFSSLK	9	Unmodified	_VTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.2503356933594	2	477.250557	952.486562	0.81924	0.00039098	-0.94091	-0.00044905	-0.12168	-5.807E-05	477.24999336988395	30.268	0.35845	30.268	30.131	30.49	0					14	7	3	0	0	0	0.02953	1	11185	11185		109.48	34.962	1	593220			47661	2618	31661	31790	48260	48260					0.008417747979592605
VTDGPGNYK	9	Unmodified	_VTDGPGNYK_					0	0	0		ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7324523925781	2	475.732532	949.45051	-0.0034031	-1.619E-06	-1.1754	-0.0005592	-1.1789	-0.00056082	475.7320252883853	19.098	0.3235	19.098	18.907	19.231	0					16	10	2	0	0	0	0.28897	1	4872	4872		51.193	5.2407	1	105850			47662	260;1784	31662	31791	48261	48261					-0.02623682378907688
VTDGPGNYK	9	Unmodified	_VTDGPGNYK_					0	0	0		ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.732177734375	2	475.732532	949.45051	0.33766	0.00016064	-0.92779	-0.00044138	-0.59013	-0.00028075	475.73214390024697	19.377	0.81332	19.377	19.124	19.937	0					34	18	4	0	0	0	0.034359	1	5819	5819		104.75	104.75	1	725270			47663	260;1784	31662	31791	48262	48262					-0.02623682378907688
VTDGPGNYK	9	Unmodified	_VTDGPGNYK_					0	0	0		ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.73223876953125	2	475.732532	949.45051	-0.40863	-0.0001944	-0.17214	-8.1891E-05	-0.58077	-0.00027629	475.73245748691687	19.165	0.35508	19.165	18.975	19.33	0					14	8	2	0	0	0	0.33044	1	5119	5119		47.657	10.498	1	188970			47664	260;1784	31662	31791	48263	48263					-0.02623682378907688
VTDGPGNYK	9	Unmodified	_VTDGPGNYK_					0	0	0		ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.7321472167969	2	475.732532	949.45051	-2.7037	-0.0012862	1.9799	0.0009419	-0.72382	-0.00034435	475.7333855273898	19.146	0.35904	19.146	18.915	19.274	0					14	8	2	0	0	0	0.16002	1	5170	5170		66.429	9.7082	1	160630			47665	260;1784	31662	31791	48264	48264					-0.02623682378907688
VTDHNLHEL	9	Unmodified	_VTDHNLHEL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.2705688476562	2	539.269813	1076.52507	0.89064	0.0004803	-0.035437	-1.911E-05	0.8552	0.00046119	539.2700182032028	23.619	0.093332	23.619	23.561	23.655	0					6	3	2	0	0	0	0.15163	1	6865	6865		67.494	21.521	1	110380			47666	6693	31663	31792	48265	48265					-0.010129195675290248
VTDHNLHEL	9	Unmodified	_VTDHNLHEL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.270263671875	2	539.269813	1076.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.932	1	23.932	23.432	24.432	0								0	0	0	0.00067705	1	7992	7992		129.42	65.214	1				47667	6693	31663	31792	48266	48266					-0.010129195675290248
VTDHNLHEL	9	Unmodified	_VTDHNLHEL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.7725219726562	2	539.269813	1076.52507	-0.13689	-7.382E-05	1.368	0.00073774	1.2311	0.00066392	539.2705930391779	23.669	0.19327	23.669	23.612	23.805	0					11	6	3	0	0	0	0.18416	1	7136	7136		63.534	25.722	1	194090			47668	6693	31663	31792	48267	48267					-0.010129195675290248
VTDIDSFIK	9	Unmodified	_VTDIDSFIK_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2801513671875	2	519.279315	1036.54408	1.6037	0.00083275	0.060034	3.1175E-05	1.6637	0.00086393	519.2790061718446	34.232	0.40567	34.232	34.037	34.443	0					16	8	3	0	0	0	0.16002	1	13093	13093		66.429	2.222	1	459660			47669	3854	31664	31793	48268	48268					0.027266170035318282
VTDINLGKL	9	Unmodified	_VTDINLGKL_					0	0	0		ENSG00000120254|ENST00000367321|MTHFD1L;nc|ENSG00000120254|Q6UB35-2|MTHFD1L;MTHFD1L|p.I587*|1|0.1|ENSG00000120254|chr6:150956023-150956023|A/-|frameshift_variant	ENSG00000120254|ENST00000367321|MTHFD1L	ENSG00000120254|ENST00000367321|MTHFD1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7904968261719	2	486.78985	971.565146	0.63801	0.00031058	2.8839	0.0014039	3.522	0.0017145	486.79183919705247	34.164	0.3406	34.164	34.044	34.385	0					13	8	3	0	0	0	0.16806	1	13163	13163		65.465	3.358	1	264510			47670	3164	31665	31794	48269	48269					0.07822627103064406
VTDKGSFEK	9	Unmodified	_VTDKGSFEK_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7609558105469	2	505.761289	1009.50803	0.13003	6.5762E-05	-0.82182	-0.00041565	-0.6918	-0.00034988	505.7609394695923	16.777	0.15439	16.777	16.68	16.835	0					7	3	3	0	0	0	0.30841	1	4874	4874		49.536	0.094497	1	270610			47671	5917	31666	31795	48270	48270					0.0036515982668561264
VTDMLVFDAK	10	Unmodified	_VTDMLVFDAK_					0	0	0			REV__ENSG00000176658|ENST00000318217|MYO1D	REV__ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.7992553710938	2	569.794275	1137.574	3.4367	0.0019582	3.3511	0.0019094	6.7878	0.0038676	569.7956599597312	40.399	0.20305	40.399	40.283	40.486	0					7	4	2	0	0	0	0.4287	1	16020	16020		25.574	0	1	103240	+		47672	16667	31667	31796	48271	48271					0.010712326772136294
VTDNGSPPK	9	Unmodified	_VTDNGSPPK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.73236083984375	2	457.732532	913.45051	-1.0091	-0.00046192	1.5902	0.00072788	0.58104	0.00026596	457.73306389507206	14.556	0.14684	14.556	14.463	14.61	0					10	6	2	0	0	0	0.11411	1	3167	3167		76.17	24.977	1	101950			47673	1705	31668	31797	48272	48272					-0.009676823789050104
VTDNGSPPK	9	Unmodified	_VTDNGSPPK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.23388671875	2	457.732532	913.45051	0.1785	8.1706E-05	-0.7232	-0.00033103	-0.5447	-0.00024933	457.73218114613826	14.592	0.10439	14.592	14.508	14.612	0					6	4	2	0	0	0	0.15163	1	3120	3120		67.494	5.3863	1	38482			47674	1705	31668	31797	48273	48273					-0.009676823789050104
VTDNGSPPK	9	Unmodified	_VTDNGSPPK_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.732666015625	2	457.732532	913.45051	-2.6442	-0.0012103	2.1708	0.00099366	-0.47337	-0.00021668	457.73373634009903	14.575	0.12791	14.575	14.501	14.629	0					10	5	3	0	0	0	0.25761	1	3115	3115		54.722	6.8067	1	53230			47675	1705	31668	31797	48274	48274					-0.009676823789050104
VTDNSIFSK	9	Unmodified	_VTDNSIFSK_					0	0	0		nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF;ENST00000439280.6_1_11:3050478-3078655:-|nuORF	nc|ENSG00000110619|P49589-2|CARS1	nc|ENSG00000110619|P49589-2|CARS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7612609863281	2	505.761289	1009.50803	-0.27552	-0.00013935	-0.59456	-0.00030071	-0.87008	-0.00044006	505.7610302558413	29.706	0.16499	29.706	29.648	29.813	0					8	3	3	0	0	0	0.49718	1	10952	10952		32.751	3.601	1	155970			47676	2630	31669	31798	48275	48275					0.0036515982668561264
VTDNTIYY	8	Unmodified	_VTDNTIYY_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.73480224609375	2	494.73474	987.454927	0.52578	0.00026012	-0.23074	-0.00011415	0.29504	0.00014597	494.73455749684337	40.092	0.15472	40.092	39.972	40.126	0					8	5	2	0	0	0	0.39542	1	15262	15262		71.378	0	1	86766	+		47677	15220	31670	31799	48276	48276					-0.039302179559967954
VTDPETHKSTK	11	Unmodified	_VTDPETHKSTK_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	621.8196411132812	2	621.819867	1241.62518	0.17936	0.00011153	-0.32754	-0.00020367	-0.14819	-9.2146E-05	621.8196564812371	13.246	0.24982	13.246	13.08	13.33	0					30	14	3	0	0	0	0.086726	1	2569	2569		94.409	51.545	1	203970			47678	1814	31671	31800	48277	48277					0.014032729756081608
VTDPETHKSTK	11	Unmodified	_VTDPETHKSTK_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	414.88189697265625	3	414.882337	1241.62518	-0.16567	-6.8733E-05	-0.23784	-9.8675E-05	-0.40351	-0.00016741	414.88232595501773	13.234	0.13157	13.234	13.165	13.297	0					9	7	2	0	0	0	0.38515	1	2587	2587		53.089	5.1294	1	43328			47679	1814	31671	31800	48278	48278					0.014032729756081608
VTDPETHKSTK	11	Unmodified	_VTDPETHKSTK_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	621.8196411132812	2	621.819867	1241.62518	0.33365	0.00020747	-0.37412	-0.00023263	-0.040462	-2.516E-05	621.8196810762327	13.514	0.56612	13.514	13.216	13.782	0					40	15	4	0	0	0	0.03035	1	3040	3040		107.45	56.262	1	2620100			47680	1814	31671	31800	48279	48279					0.014032729756081608
VTDPETHKSTK	11	Unmodified	_VTDPETHKSTK_					0	0	0		ENST00000591716.6_1_19:35651643-35657154:+|nuORF;ENSG00000089327|ENST00000392219|FXYD5	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	414.8827209472656	3	414.882337	1241.62518	-0.065427	-2.7145E-05	0.43916	0.0001822	0.37373	0.00015505	414.88251416340137	13.321	0.25659	13.321	13.116	13.373	0					25	15	2	0	0	0	0.48922	1	2636	2636		45.022	12.272	1	142080			47681	1814	31671	31800	48280	48280					0.014032729756081608
VTDPSIPIRK	10	Unmodified	_VTDPSIPIRK_					0	0	0		ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant;ELF4|p.A554Pfs*13|1|0.32|ENSG00000102034|chrX:130067053-130067053|C/-|frameshift_variant;ENSG00000102034|ENST00000308167|ELF4	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	375.8927307128906	3	375.892396	1124.65536	-1.0786	-0.00040545	1.2891	0.00048458	0.2105	7.9125E-05	375.8929559100101	25.515	0.13897	25.515	25.429	25.568	0					8	5	2	0	0	0	0.4758	1	7948	7948		47.96	12.807	1	72868			47682	903	31672	31801	48281	48281					0.09801676431470696
VTDPSIPIRK	10	Unmodified	_VTDPSIPIRK_					0	0	0		ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant;ELF4|p.A554Pfs*13|1|0.32|ENSG00000102034|chrX:130067053-130067053|C/-|frameshift_variant;ENSG00000102034|ENST00000308167|ELF4	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.8922424316406	3	375.892396	1124.65536	0.71932	0.00027039	-0.7631	-0.00028684	-0.043784	-1.6458E-05	375.8920155883453	25.659	0.22028	25.659	25.498	25.718	0					10	4	3	0	0	0	0.50287	1	9025	9025		45.022	1.3714	1	636030			47683	903	31672	31801	48282	48282					0.09801676431470696
VTDPSIPIRKK	11	Unmodified	_VTDPSIPIRKK_					0	0	0		ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant;ELF4|p.A554Pfs*13|1|0.32|ENSG00000102034|chrX:130067053-130067053|C/-|frameshift_variant;ENSG00000102034|ENST00000308167|ELF4	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	627.3823852539062	2	627.382437	1252.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.896	1	21.896	21.396	22.396	0								0	0	0	0.37918	1	6105	6105		46.457	20.883	1				47684	903	31673	31802	48283	48283					0.1340560990265658
VTDPSIPIRKK	11	Unmodified	_VTDPSIPIRKK_					0	0	0		ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant;ELF4|p.A554Pfs*13|1|0.32|ENSG00000102034|chrX:130067053-130067053|C/-|frameshift_variant;ENSG00000102034|ENST00000308167|ELF4	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	418.5904846191406	3	418.590717	1252.75032	-1.3477	-0.00056413	1.1886	0.00049752	-0.15911	-6.6602E-05	418.5912162998602	21.909	0.26925	21.909	21.746	22.015	0					19	8	3	0	0	0	0.50799	1	6354	6354		43.651	13.082	1	221060			47685	903	31673	31802	48284	48284					0.1340560990265658
VTDPSIPIRKK	11	Unmodified	_VTDPSIPIRKK_					0	0	0		ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant;ELF4|p.A554Pfs*13|1|0.32|ENSG00000102034|chrX:130067053-130067053|C/-|frameshift_variant;ENSG00000102034|ENST00000308167|ELF4	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	ELF4|p.Q341Rfs*30|2|0.25|ENSG00000102034|chrX:130069466-130069466|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	418.5910339355469	3	418.590717	1252.75032	-0.047963	-2.0077E-05	-0.43443	-0.00018185	-0.48239	-0.00020193	418.59066794443623	21.953	0.32427	21.953	21.761	22.085	0					16	7	3	0	0	0	0.44025	1	6445	6445		48.602	12.284	1	140420			47686	903	31673	31802	48285	48285					0.1340560990265658
VTDRNITLSL	10	Unmodified	_VTDRNITLSL_					0	0	0		OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000105953|Q02218-3|OGDH	OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	OGDH|p.N950Qfs*3|2|0.28|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	377.88555908203125	3	377.883789	1130.62954	3.2534	0.0012294	0.74729	0.00028239	4.0007	0.0015118	377.88399826689846	24.05	1.1533	24.05	23.602	24.756	0					54	23	4	0	0	0	0.7005	1	8257	8257		27.047	0	1	670340			47687	2410	31674	31803	48286	48286					0.06944782189179932
VTDSPRILK	9	Unmodified	_VTDSPRILK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.8086547851562	2	514.808574	1027.60259	0.13841	7.1252E-05	0.87643	0.00045119	1.0148	0.00052245	514.8090002969426	22.411	0.26066	22.411	22.24	22.501	0					16	7	3	0	0	0	0.021035	1	6315	6315		93.598	16.28	1	300690			47688	4488	31675	31804	48287	48287					0.0898971836866167
VTDSPRILK	9	Unmodified	_VTDSPRILK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.80859375	2	514.808574	1027.60259	0.025399	1.3076E-05	0.47602	0.00024506	0.50142	0.00025814	514.8088913708691	22.722	0.33908	22.722	22.548	22.887	0					22	8	4	0	0	0	0.0028263	1	7412	7412		141.52	51.151	1	2254900			47689	4488	31675	31804	48288	48288					0.0898971836866167
VTDSPRILK	9	Unmodified	_VTDSPRILK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.8085327148438	2	514.808574	1027.60259	0.038901	2.0026E-05	0.44621	0.00022971	0.48511	0.00024974	514.8087434207656	22.467	0.22	22.467	22.315	22.535	0					11	6	2	0	0	0	0.040209	1	6592	6592		82.75	27.974	1	235360			47690	4488	31675	31804	48289	48289					0.0898971836866167
VTDSPRILK	9	Unmodified	_VTDSPRILK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.8088989257812	2	514.808574	1027.60259	-0.49303	-0.00025382	0.88543	0.00045583	0.39239	0.00020201	514.8091036074711	22.636	0.30935	22.636	22.434	22.744	0					18	6	4	0	0	0	0.011893	1	7659	7659		120.87	19.268	1	1509100			47691	4488	31675	31804	48290	48290					0.0898971836866167
VTDVAGHL	8	Unmodified	_VTDVAGHL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	406.71649169921875	2	406.21906	810.423567	-1.3825	-0.00056161	0.58186	0.00023636	-0.80068	-0.00032525	406.2195447277658	24.023	0.45454	24.023	23.768	24.223	0					31	15	4	0	0	0	0.72892	1	7218	7218		29.842	0	1	1460300			47692	6273	31676	31805	48291	48291					0.010772538005767274
VTDYGKDLMEK	11	Unmodified	_VTDYGKDLMEK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.5475769042969	3	433.548078	1297.6224	0.71139	0.00030842	-1.4384	-0.0006236	-0.72699	-0.00031518	433.5474903362643	29.048	0.28856	29.048	28.968	29.256	0					19	7	4	0	0	0	0.36734	1	10326	10326		72.289	23.687	1	1112000			47693	5289	31677	31806	48292	48292					-0.01450318473553125
VTEALKPTAAT	11	Unmodified	_VTEALKPTAAT_					0	0	0		LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant;ENSG00000275183|ENST00000611161|LENG9	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	367.8756408691406	3	367.876523	1100.60774	-2.0794	-0.00076498	-0.28137	-0.00010351	-2.3608	-0.00086849	367.87642204582954	25.625	0.36392	25.625	25.414	25.778	0					12	9	2	0	0	0	0.78372	1	8174	8174		18.531	0.69791	1	63130			47694	8106	31678	31807	48293	48293					0.06145977440610295
VTEALWTY	8	Unmodified	_VTEALWTY_					0	0	0		ENST00000601658.5_1_2:149634897-149646240:-|nuORF	ENST00000601658.5_1_2:149634897-149646240:-|nuORF	ENST00000601658.5_1_2:149634897-149646240:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7469482421875	2	491.74765	981.480748	2.7096	0.0013325	-4.316	-0.0021224	-1.6064	-0.00078994	491.74561327828116	16.523	0.16465	16.523	16.418	16.583	0					8	3	3	0	0	0	0.57802	1	4605	4605		52.299	5.8424	1	882780			47695	11036	31679	31808	48294	48294					-0.010733237137287688
VTEGFKYL	8	Unmodified	_VTEGFKYL_					0	0	0			REV__ENST00000481871.5_1_1:101455997-101490867:-|nuORF	REV__ENST00000481871.5_1_1:101455997-101490867:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.2598571777344	2	478.758018	955.501483	0.4453	0.00021319	-0.88502	-0.00042371	-0.43971	-0.00021052	478.757600491318	40.704	0.35847	40.704	40.595	40.953	0					26	12	3	0	0	0	0.64144	1	15494	15494		42.396	1.8235	1	406160	+		47696	14201	31680	31809	48295	48295					0.02195266665944473
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2662963867188	2	515.266207	1028.51786	1.3018	0.00067075	-0.76132	-0.00039228	0.54045	0.00027847	515.2657408531389	29.961	0.35673	29.961	29.846	30.202	0					43	13	4	0	0	0	0.0040894	1	9471	9471		162.25	68.246	1	2297300			47697	1296	31681	31810	48296	48296					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2660522460938	2	515.266207	1028.51786	0.16988	8.7531E-05	0.17825	9.1844E-05	0.34812	0.00017938	515.2662432421088	29.925	0.13742	29.925	29.861	29.999	0					9	5	2	0	0	0	0.13267	1	9488	9488		71.877	16.373	1	180430			47698	1296	31681	31810	48297	48297					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.26611328125	2	515.266207	1028.51786	1.1972	0.00061688	-0.71473	-0.00036828	0.48247	0.0002486	515.265743722936	30.209	0.71757	30.209	30.087	30.805	0					50	17	5	0	0	0	5.4201E-05	1	10845	10845		195.06	79.604	1	15698000			47699	1296	31681	31810	48298	48298					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2661743164062	2	515.266207	1028.51786	0.027742	1.4295E-05	-0.24915	-0.00012838	-0.22141	-0.00011408	515.2660720933734	30.203	0.29032	30.203	30.115	30.405	0					12	7	2	0	0	0	0.07136	1	10857	10857		87.696	18.91	1	750210			47700	1296	31681	31810	48299	48299					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.2669677734375	2	515.266207	1028.51786	-0.11432	-5.8906E-05	0.55563	0.0002863	0.44131	0.00022739	515.2663295995809	29.956	0.57524	29.956	29.877	30.452	0					43	20	4	0	0	0	0.0406	1	9778	9778		98.629	21.855	1	4029200			47701	1296	31681	31810	48300	48300					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2661743164062	2	515.266207	1028.51786	1.403	0.00072293	-0.77696	-0.00040034	0.62606	0.00032259	515.2657049956448	30.214	0.73989	30.214	30.042	30.782	0					25	16	2	0	0	0	0.0059092	1	11244	11244		154.12	51.345	1	18913000			47702	1296	31681	31810	48301	48301					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2669067382812	2	515.266207	1028.51786	1.0864	0.00055978	-0.61908	-0.00031899	0.4673	0.00024078	515.2657678442087	29.998	0.21773	29.998	29.876	30.094	0					12	5	3	0	0	0	0.020674	1	10147	10147		120.87	41.417	1	497160			47703	1296	31681	31810	48302	48302					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2664184570312	2	515.266207	1028.51786	0.70795	0.00036479	-0.5793	-0.00029849	0.12865	6.6291E-05	515.2658066336653	29.978	0.48722	29.978	29.865	30.352	0					30	12	4	0	0	0	1.0965E-12	1	10138	10138		225.24	108.33	1	4181500			47704	1296	31681	31810	48303	48303					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2662963867188	2	515.266207	1028.51786	0.15525	7.9996E-05	0.18309	9.4338E-05	0.33834	0.00017433	515.2662210531082	30.155	0.46086	30.155	29.997	30.458	0					29	9	5	0	0	0	0.0012088	1	11116	11116		180.87	76.123	1	5970800			47705	1296	31681	31810	48304	48304					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant;ENSG00000057608|ENST00000380191|GDI2	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	GDI2|p.S222Afs*20|1|0.1|ENSG00000057608|chr10:5785197-5785197|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.266357421875	2	515.266207	1028.51786	1.5006	0.00077323	-0.74865	-0.00038575	0.752	0.00038748	515.265769095912	30.139	0.85069	30.139	30.031	30.881	0					36	17	4	0	0	0	0.0012088	1	11107	11107		180.87	86.863	1	26295000			47706	1296	31681	31810	48305	48305					0.004743478320506256
VTEGSVNQVP	10	Unmodified	_VTEGSVNQVP_					0	0	0			REV__ENSG00000103479|ENST00000262133|RBL2	REV__ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2662353515625	2	515.264196	1028.51384	3.2382	0.0016685	1.3329	0.00068679	4.5711	0.0023553	515.2647632424712	30.123	0.41119	30.123	30.014	30.425	0					16	8	2	0	0	0	0.029105	1	11100	11100		118.74	11.736	1	14395000	+		47707	13681	31682	31811	48306	48306					0.0007225833833217621
VTEHFIIV	8	Unmodified	_VTEHFIIV_					0	0	0			REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.2758483886719	2	479.273835	956.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.437	1	40.437	39.937	40.937	0								0	0	0	1.7419	1	15934	15934		44.531	0	1		+		47708	16073	31683	31812	48307	48307					0.0531125941990922
VTEKSAKHI	9	Unmodified	_VTEKSAKHI_					0	0	0			REV__ENSG00000176635|ENST00000336726|HORMAD2	REV__ENSG00000176635|ENST00000336726|HORMAD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.2952575683594	2	506.792924	1011.57129	3.7849	0.0019181	-2.1081	-0.0010684	1.6768	0.00084979	506.79176064201613	21.255	0.20774	21.255	21.168	21.375	0					13	6	3	0	0	0	0.12239	1	6071	6071		74.255	2.3776	1	82658	+		47709	16665	31684	31813	48308	48308					0.06597145334569632
VTEKVLAAVYK	11	Unmodified	_VTEKVLAAVYK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENSG00000136872|ENST00000647789|ALDOB	nc|ENSG00000149925|P04075|ALDOA;ENSG00000136872|ENST00000647789|ALDOB	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.5797119140625	3	407.579818	1219.71762	-0.55376	-0.0002257	0.50918	0.00020753	-0.044578	-1.8169E-05	407.58004989174617	30.697	0.16855	30.697	30.629	30.797	0					8	3	3	0	0	0	0.14623	1	11403	11403		80.737	46.651	1	182250			47710	4912;4122	31685	31814	48309	48309					0.11655402779774704
VTELRQLL	8	Unmodified	_VTELRQLL_					0	0	0			REV__ENST00000542037.1_1_12:123461107-123462595:+|nuORF	REV__ENST00000542037.1_1_12:123461107-123462595:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.298095703125	2	486.297842	970.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.487	1	37.487	36.987	37.987	0								0	0	0	1.7419	1	13421	13421		44.117	1.7207	1		+		47711	13965	31686	31815	48310	48310					0.09466333339958055
VTEQPRQL	8	Unmodified	_VTEQPRQL_					0	0	0			REV__ENSG00000130396|ENST00000683244|AFDN	REV__ENSG00000130396|ENST00000683244|AFDN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7694091796875	2	485.769448	969.524344	0.64874	0.00031514	2.079	0.0010099	2.7278	0.0013251	485.7690422108915	34.083	0.70546	34.083	33.799	34.504	0					36	17	3	0	0	0	0.41701	1	13103	13103		68.787	2.3575	1	586170	+		47712	14578	31687	31816	48311	48311					0.03836285783427229
VTETAKVNI	9	Unmodified	_VTETAKVNI_					0	0	0		SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant;SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant;SPATA31A1|p.T1192Nfs*14|1|0.28|ENSG00000204849|chr9:39361333-39361334|-/A|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6;ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.79278564453125	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.19	1	22.19	21.69	22.69	0								0	0	0	0.1836	1	7473	7473		53.351	1.0523	1				47713	7104	31688	31817	48312	48312					0.056580367233777906
VTEVGLSAY	9	Unmodified	_VTEVGLSAY_					0	0	0		nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;ZNF106|p.S482Pfs*33|1|0.22|ENSG00000103994|chr15:42450759-42450759|A/-|frameshift_variant	nc|ENSG00000103994|Q9H2Y7|ZNF106	nc|ENSG00000103994|Q9H2Y7|ZNF106	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.744873046875	2	469.745108	937.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.968	1	35.968	35.468	36.468	0								0	0	0	0.10121	1	11792	11792		71.296	12.514	1				47714	2262	31689	31818	48313	48313					0.004423724236630733
VTEVTRALL	9	Unmodified	_VTEVTRALL_					0	0	0			REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.5377502441406	3	334.537842	1000.5917	0.38437	0.00012859	-0.31841	-0.00010652	0.065964	2.2068E-05	334.53769411156406	25.893	0.2455	25.893	25.755	26	0					5	3	2	0	0	0	0.57706	1	9217	9217		18.262	0.79408	1	154130	+		47715	14798	31690	31819	48314	48314					0.09142315994370165
VTFEASRAE	9	Unmodified	_VTFEASRAE_					0	0	0			REV__nc|ENSG00000181036|Q6DN72-4|FCRL6	REV__nc|ENSG00000181036|Q6DN72-4|FCRL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2512512207031	2	505.251089	1008.48762	0.71231	0.0003599	0.25776	0.00013024	0.97008	0.00049013	505.2512866785974	26.064	0.19773	26.064	26.006	26.203	0					13	7	3	0	0	0	0.13267	1	7881	7881		71.877	13.096	1	165890	+		47716	16834	31691	31820	48315	48315					-0.016280108331443444
VTFFYFLK	8	Unmodified	_VTFFYFLK_					0	0	0			REV__GPR160|p.I239Yfs*22|5|0.32|ENSG00000173890|chr3:170084681-170084681|A/-|frameshift_variant	REV__GPR160|p.I239Yfs*22|5|0.32|ENSG00000173890|chr3:170084681-170084681|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.797119140625	2	532.794404	1063.57425	1.1443	0.00060967	3.1105	0.0016573	4.2548	0.0022669	532.795906568546	41.07	0.14455	41.07	41.04	41.185	0					11	8	2	0	0	0	0.49216	1	14518	14518		60.972	13.315	1	32812	+		47717	16537	31692	31821	48316	48316					0.04501020459360916
VTFGTKSRV	9	Unmodified	_VTFGTKSRV_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	332.1944885253906	3	332.194186	993.56073	0.26461	8.7902E-05	-0.32116	-0.00010669	-0.056547	-1.8785E-05	332.19406960560167	17.2	0.39438	17.2	16.903	17.297	0					30	13	3	0	0	0	0.61124	1	3990	3990		13.454	0	1	541220			47718	1311	31693	31822	48317	48317					0.06369162680141471
VTFKEESK	8	Unmodified	_VTFKEESK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.25848388671875	2	484.258382	966.502212	-0.26357	-0.00012763	1.0664	0.00051639	0.8028	0.00038876	484.258588217671	34.893	0.20205	34.893	34.795	34.997	0					10	7	2	0	0	0	0.57171	1	12375	12375		52.937	6.9645	1	84499			47719	6474	31694	31823	48318	48318					0.017620613150029385
VTFLSRNLE	9	Unmodified	_VTFLSRNLE_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.7990112304688	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.825	1	30.825	30.325	31.325	0								0	0	0	0.27939	1	10544	10544		39.253	10.083	1				47720	3991	31695	31824	48319	48319					0.0461712798901317
VTFLVDRKCQL	11	Unmodified	_VTFLVDRKCQL_					0	0	0		nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B;ANKRD30A|p.A432Efs*3|1|0.28|ENSG00000148513|chr10:37142192-37142192|C/-|frameshift_variant;ANKRD30B|p.I472Tfs*16|1|0.08|ENSG00000180777|chr18:14778069-14778070|-/C|frameshift_variant;nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;ANKRD30A|p.S651Rfs*8|1|0.03|ENSG00000148513|chr10:37162796-37162797|-/AGATTTATCA|frameshift_variant;ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant;ANKRD30B|p.S1062Vfs*2|1|0.33|ENSG00000180777|chr18:14850356-14850356|A/-|frameshift_variant;ENSG00000148513|ENST00000361713|ANKRD30A	nc|ENSG00000180777|Q9BXX2|ANKRD30B	nc|ENSG00000180777|Q9BXX2|ANKRD30B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.24774169921875	3	441.248074	1320.72239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.343	1	20.343	19.843	20.843	0								0	0	0	0.31508	1	6296	6296		50.034	1.432	1				47721	6816	31696	31825	48320	48320					0.07485963650901795
VTFNGLNQM	9	Unmodified	_VTFNGLNQM_					0	0	0		ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2518920898438	2	512.250034	1022.48552	-0.32227	-0.00016509	3.3509	0.0017165	3.0286	0.0015514	512.2515454382437	13.605	0.04468	13.605	13.584	13.629	0					4	2	2	0	0	0	0.53083	1	2829	2829		29.15	2.4566	1	44364			47722	1052	31697	31826	48321	48321					-0.02482762842601005
VTFNSALAQK	10	Unmodified	_VTFNSALAQK_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7984619140625	2	539.798206	1077.58186	3.4437	0.0018589	-2.5298	-0.0013656	0.91393	0.00049334	539.7969816094417	30.954	0.211	30.954	30.848	31.059	0					6	4	2	0	0	0	0.09653	1	11530	11530		96.034	24.156	1	599790			47723	4058	31698	31827	48322	48322					0.046171279889904326
VTFPQAYP	8	Unmodified	_VTFPQAYP_					0	0	0		ENST00000551296.5_1_12:56330167-56330479:+|nuORF	ENST00000551296.5_1_12:56330167-56330479:+|nuORF	ENST00000551296.5_1_12:56330167-56330479:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.73480224609375	2	461.737086	921.459619	-0.82699	-0.00038185	-3.4785	-0.0016061	-4.3055	-0.001988	461.7358407848661	26.45	0.12365	26.45	26.376	26.499	0					7	4	2	0	0	0	0.60719	1	8332	8332		47.916	0.25827	1	47751			47724	10625	31699	31828	48323	48323					-0.004252890225870942
VTFRKILSH	9	Unmodified	_VTFRKILSH_					0	0	0		ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	367.55731201171875	3	367.557348	1099.65021	0.95322	0.00035036	-1.0464	-0.0003846	-0.093138	-3.4234E-05	367.5569492399757	39.604	1.1186	39.604	39.11	40.229	0					30	25	2	0	0	0	0.58342	1	15679	15679		23.523	1.8369	1	70881			47725	4623	31700	31829	48324	48324					0.10437417359503343
VTFSRRFG	8	Unmodified	_VTFSRRFG_					0	0	0		ENST00000300688.7_1_11:118272331-118272397:+|nuORF	ENST00000300688.7_1_11:118272331-118272397:+|nuORF	ENST00000300688.7_1_11:118272331-118272397:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.2657470703125	2	485.266876	968.519199	-0.56815	-0.0002757	-1.5352	-0.00074497	-2.1033	-0.0010207	485.2661495564767	31.284	0.85757	31.284	31.126	31.984	0					53	17	5	0	0	0	0.44433	1	11643	11643		65.803	2.4969	1	40743000			47726	8485	31701	31830	48325	48325					0.03368026711473249
VTFTDCIVR	9	Unmodified	_VTFTDCIVR_					0	0	0			REV__nc|ENSG00000146166|Q5TDP6-2|LGSN	REV__nc|ENSG00000146166|Q5TDP6-2|LGSN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2719116210938	2	527.273509	1052.53247	1.2287	0.00064783	-3.1917	-0.0016829	-1.963	-0.0010351	527.2716166900136	30.941	0.1403	30.941	30.864	31.005	0					6	3	2	0	0	0	0.46194	1	10593	10593		21.96	0	1	64895	+		47727	15302	31702	31831	48326	48326					0.008300967085460798
VTFVKSEE	8	Unmodified	_VTFVKSEE_					0	0	0		LMOD3|p.I213Yfs*4|1|0.13|ENSG00000163380|chr3:69119718-69119718|T/-|frameshift_variant;nc|ENSG00000163380|Q0VAK6-2|LMOD3;ENSG00000163380|ENST00000420581|LMOD3	LMOD3|p.I213Yfs*4|1|0.13|ENSG00000163380|chr3:69119718-69119718|T/-|frameshift_variant	LMOD3|p.I213Yfs*4|1|0.13|ENSG00000163380|chr3:69119718-69119718|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7447204589844	2	469.745108	937.475663	0.61542	0.00028909	-1.5314	-0.00071936	-0.91598	-0.00043027	469.74437978174626	36.246	0.25322	36.246	36.141	36.394	0					18	7	3	0	0	0	0.26534	1	14097	14097		94.006	11.701	1	709870			47728	5550	31703	31832	48327	48327					0.00442372423674442
VTGAANVAK	9	Unmodified	_VTGAANVAK_					0	0	0		PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant;PLIN4|p.G1001Afs*9|1|0.16|ENSG00000167676|chr19:4510916-4510916|C/-|frameshift_variant;ENSG00000167676|ENST00000301286|PLIN4	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	415.7401123046875	2	415.74016	829.465767	-0.35202	-0.00014635	0.29661	0.00012331	-0.055415	-2.3038E-05	415.7400911875909	16.623	0.1648	16.623	16.549	16.714	0					5	3	2	0	0	0	0.54267	1	4645	4645		27.882	3.6795	1	84978			47729	6018	31704	31833	48328	48328					0.04421229208935529
VTGAGKGI	8	Unmodified	_VTGAGKGI_					0	0	0		ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR;DCXR|p.V10L|1|0.48|ENSG00000169738|chr17:82037655-82037655|C/A|missense_variant;ENST00000579334.5_1_17:79995052-79995552:-|nuORF;ENST00000580750.5_1_17:79994503-79995558:-|nuORF	ENST00000578885.5_1_17:79994327-79995552:-|nuORF	ENST00000578885.5_1_17:79994327-79995552:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.7106628417969	2	351.710871	701.407189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.218	1	30.218	29.718	30.718	0								0	0	0	1.7419	1	9901	9901		26.796	0	1				47730	6182	31705	31834	48329	48329					0.044541726344732524
VTGAMNVAK	9	Unmodified	_VTGAMNVAK_					0	0	0		PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant;PLIN4|p.G1001Afs*9|1|0.16|ENSG00000167676|chr19:4510916-4510916|C/-|frameshift_variant;ENSG00000167676|ENST00000301286|PLIN4;PLIN4|p.G374Afs*35|1|0.53|ENSG00000167676|chr19:4512797-4512797|C/-|frameshift_variant	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	445.74176025390625	2	445.741845	889.469137	-0.17398	-7.7549E-05	0.051525	2.2967E-05	-0.12245	-5.4582E-05	445.74181152211895	20.806	0.11717	20.806	20.73	20.847	0					4	2	2	0	0	0	0.11898	1	6804	6804		75.043	23.851	1	157040			47731	6018	31706	31835	48330	48330					0.01998155991304884
VTGDWKVM	8	Unmodified	_VTGDWKVM_					0	0	0		nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.2371826171875	2	468.236396	934.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.841	1	39.841	39.341	40.341	0								0	0	0	1.7419	1	15775	15775		45.952	1.8352	1				47732	1118	31707	31836	48331	48331					-0.011612463829806075
VTGFPEPTLTW	11	Unmodified	_VTGFPEPTLTW_					0	0	0		nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141;ENST00000480419.1_1_2:179698902-179710451:-|nuORF	nc|ENSG00000163492|Q6ZP82-1|CCDC141	nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.5486755371094	3	416.548406	1246.62339	0.067183	2.7985E-05	0.26714	0.00011127	0.33432	0.00013926	416.5486348434199	24.402	0.26374	24.402	24.213	24.477	0					8	5	2	0	0	0	0.66915	1	8561	8561		30.569	8.8831	1	68881			47733	5564	31708	31837	48332	48332					0.009942639576593137
VTGGATGIGK	10	Unmodified	_VTGGATGIGK_					0	0	0		ENSG00000115425|ENST00000265322|PECR;ENST00000487318.6_1_2:216928831-216946521:-|nuORF;ENST00000474093.5_1_2:216929948-216946521:-|nuORF;ENST00000497889.5_1_2:216915539-216946464:-|nuORF	ENSG00000115425|ENST00000265322|PECR	ENSG00000115425|ENST00000265322|PECR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.7452697753906	2	430.745442	859.476331	0.78149	0.00033662	-1.3141	-0.00056604	-0.53261	-0.00022942	430.74487215562846	18.604	0.18189	18.604	18.473	18.655	0					7	4	2	0	0	0	0.15477	1	5469	5469		85.862	21.655	1	377440			47734	2908	31709	31838	48333	48333					0.04097211863393113
VTGGATGIGK	10	Unmodified	_VTGGATGIGK_					0	0	0		ENSG00000115425|ENST00000265322|PECR;ENST00000487318.6_1_2:216928831-216946521:-|nuORF;ENST00000474093.5_1_2:216929948-216946521:-|nuORF;ENST00000497889.5_1_2:216915539-216946464:-|nuORF	ENSG00000115425|ENST00000265322|PECR	ENSG00000115425|ENST00000265322|PECR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.74530029296875	2	430.745442	859.476331	-0.4982	-0.0002146	-0.030065	-1.295E-05	-0.52826	-0.00022755	430.7455051567199	18.519	0.11843	18.519	18.459	18.578	0					4	2	2	0	0	0	0.35046	1	5709	5709		61.691	4.9702	1	225500			47735	2908	31709	31838	48334	48334					0.04097211863393113
VTGGATGIGK	10	Unmodified	_VTGGATGIGK_					0	0	0		ENSG00000115425|ENST00000265322|PECR;ENST00000487318.6_1_2:216928831-216946521:-|nuORF;ENST00000474093.5_1_2:216929948-216946521:-|nuORF;ENST00000497889.5_1_2:216915539-216946464:-|nuORF	ENSG00000115425|ENST00000265322|PECR	ENSG00000115425|ENST00000265322|PECR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.74542236328125	2	430.745442	859.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.548	1	18.548	18.048	19.048	0								0	0	0	0.20542	1	5573	5573		63.534	15.618	1				47736	2908	31709	31838	48335	48335					0.04097211863393113
VTGGIFSVTK	10	Unmodified	_VTGGIFSVTK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.7906188964844	2	504.78985	1007.56515	0.68685	0.00034671	0.84109	0.00042458	1.5279	0.00077129	504.7903774746349	35.228	0.15807	35.228	35.153	35.311	0					14	7	3	0	0	0	0.4287	1	11541	11541		53.089	5.1294	1	152730			47737	4948	31710	31839	48336	48336					0.061666271030503594
VTGGIFSVTK	10	Unmodified	_VTGGIFSVTK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.7904052734375	2	504.78985	1007.56515	0.78948	0.00039852	-0.46661	-0.00023554	0.32287	0.00016298	504.78970794360146	35.534	0.23506	35.534	35.416	35.651	0					18	6	3	0	0	0	0.1725	1	13311	13311		82.831	5.2972	1	634190			47738	4948	31710	31839	48337	48337					0.061666271030503594
VTGGIFSVTK	10	Unmodified	_VTGGIFSVTK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.79046630859375	2	504.78985	1007.56515	-0.8083	-0.00040802	1.33	0.00067138	0.52172	0.00026336	504.790600687422	35.289	0.18801	35.289	35.212	35.4	0					14	8	2	0	0	0	0.48965	1	11930	11930		46.457	5.0302	1	121820			47739	4948	31710	31839	48338	48338					0.061666271030503594
VTGGIFSVTK	10	Unmodified	_VTGGIFSVTK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7900085449219	2	504.78985	1007.56515	1.0418	0.0005259	-0.66329	-0.00033482	0.37854	0.00019108	504.78962952151414	35.537	0.23059	35.537	35.382	35.613	0					11	6	2	0	0	0	0.019261	1	13767	13767		125.71	39.851	1	609340			47740	4948	31710	31839	48339	48339					0.061666271030503594
VTGGIFSVTK	10	Unmodified	_VTGGIFSVTK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7906799316406	2	504.78985	1007.56515	0.046754	2.3601E-05	1.3454	0.00067917	1.3922	0.00070277	504.79037001743114	35.294	0.11495	35.294	35.227	35.342	0					7	4	2	0	0	0	0.5155	1	12561	12561		43.651	10.9	1	68838			47741	4948	31710	31839	48340	48340					0.061666271030503594
VTGGIFSVTK	10	Unmodified	_VTGGIFSVTK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.78997802734375	2	504.78985	1007.56515	1.2187	0.0006152	-1.0512	-0.00053065	0.16749	8.455E-05	504.7891487137096	35.43	0.32302	35.43	35.364	35.687	0					14	6	4	0	0	0	0.034592	1	13685	13685		114.86	13.398	1	1120400			47742	4948	31710	31839	48341	48341					0.061666271030503594
VTGGYAALI	9	Unmodified	_VTGGYAALI_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	432.74468994140625	2	432.744911	863.475269	-0.47093	-0.00020379	0.34082	0.00014749	-0.13011	-5.6304E-05	432.7449090042959	35.662	0.19522	35.662	35.613	35.808	0					6	5	2	0	0	0	0.13483	1	13843	13843		71.378	0.082209	1	40373			47743	4228	31711	31840	48342	48342					0.03806997494461939
VTGIEELR	8	Unmodified	_VTGIEELR_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18;CCDC18|p.N601Kfs*13|1|0.35|ENSG00000122483|chr1:93216715-93216716|-/A|frameshift_variant	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.7579345703125	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.428	1	21.428	20.928	21.928	0								0	0	0	1.7419	1	7105	7105		30.504	0	1				47744	3266	31712	31841	48343	48343					0.041414810348555875
VTGINSRLVV	10	Unmodified	_VTGINSRLVV_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.3245849609375	2	529.321848	1056.62914	0.072944	3.8611E-05	0.73454	0.00038881	0.80749	0.00042742	529.3223524052157	18.055	0.28723	18.055	17.869	18.156	0					12	8	3	0	0	0	0.55603	1	4603	4603		39.253	0	1	464980	+		47745	13940	31713	31842	48344	48344					0.10309407260001535
VTGKCWVL	8	Unmodified	_VTGKCWVL_					0	0	0		nc|ENSG00000143297|Q96RD9-4|FCRL5	nc|ENSG00000143297|Q96RD9-4|FCRL5	nc|ENSG00000143297|Q96RD9-4|FCRL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.257568359375	2	453.249306	904.484059	0.69195	0.00031363	-1.1339	-0.00051394	-0.44196	-0.00020032	453.2487933808704	33.923	0.27201	33.923	33.844	34.116	0					19	7	4	0	0	0	0.64096	1	12569	12569		42.474	3.453	1	1005500			47746	11561	31714	31843	48345	48345					0.02799647859308152
VTGKLSSKE	9	Unmodified	_VTGKLSSKE_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7716979980469	2	474.771657	947.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.319	1	17.319	16.819	17.819	0								0	0	0	0.23445	1	4293	4293		45.972	5.1941	1				47747	6530	31715	31844	48346	48346					0.05289750206338795
VTGKTLIIDK	10	Unmodified	_VTGKTLIIDK_					0	0	0			REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.2288513183594	3	363.228897	1086.66486	0.10251	3.7236E-05	-0.42647	-0.00015491	-0.32396	-0.00011767	363.22868220498583	20.765	0.22953	20.765	20.69	20.92	0					10	8	2	0	0	0	0.41384	1	5602	5602		54.722	1.6334	1	138070	+		47748	21935	31716	31845	48347	48347					0.12499444716991093
VTGLFKDRPL	10	Unmodified	_VTGLFKDRPL_					0	0	0		PIK3C2B|p.S1150L|1|0.14|ENSG00000133056|chr1:204439002-204439002|G/A|missense_variant	PIK3C2B|p.S1150L|1|0.14|ENSG00000133056|chr1:204439002-204439002|G/A|missense_variant	PIK3C2B|p.S1150L|1|0.14|ENSG00000133056|chr1:204439002-204439002|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	382.895263671875	3	382.560758	1144.66044	-0.13913	-5.3225E-05	0.015432	5.9038E-06	-0.1237	-4.7321E-05	382.560693984393	31.711	0.57236	31.711	31.516	32.088	0					41	16	4	0	0	0	0.66185	1	10892	10892		25.126	0	1	1802000			47749	11933	31717	31846	48348	48348					0.09389980294099587
VTGLSPGVTY	10	Unmodified	_VTGLSPGVTY_					0	0	0		FN1|p.L1714*|1|0.2|ENSG00000115414|chr2:215380832-215380832|G/-|frameshift_variant;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-14|FN1;FN1|p.S1791Rfs*9|1|0.07|ENSG00000115414|chr2:215378239-215378239|A/-|frameshift_variant;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;ENSG00000115414|ENST00000354785|FN1	FN1|p.L1714*|1|0.2|ENSG00000115414|chr2:215380832-215380832|G/-|frameshift_variant	FN1|p.L1714*|1|0.2|ENSG00000115414|chr2:215380832-215380832|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2660827636719	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.137	1	34.137	33.637	34.637	0								0	0	0	0.22634	1	12689	12689		60.972	4.2509	1				47750	2904	31718	31847	48349	48349					0.021303478320419345
VTGLVVAPR	9	Unmodified	_VTGLVVAPR_					0	0	0			REV__ENST00000264956.10_2_4:5815433-5815706:+|nuORF	REV__ENST00000264956.10_2_4:5815433-5815706:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	456.286865234375	2	456.287277	910.560001	0.74829	0.00034143	-1.0605	-0.00048389	-0.31222	-0.00014246	456.2867475690528	32.457	0.5357	32.457	32.223	32.759	0					28	13	3	0	0	0	0.2873	1	11896	11896		51.335	1.8939	1	649470	+		47751	18066	31719	31848	48350	48350					0.10114368031076992
VTGLVVAPR	9	Unmodified	_VTGLVVAPR_					0	0	0			REV__ENST00000264956.10_2_4:5815433-5815706:+|nuORF	REV__ENST00000264956.10_2_4:5815433-5815706:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	456.7884521484375	2	456.287277	910.560001	-0.14241	-6.4978E-05	-0.75558	-0.00034476	-0.89798	-0.00040974	456.28688896377395	34.627	0.27857	34.627	34.504	34.783	0					11	7	2	0	0	0	0.35045	1	13336	13336		45.952	7.1458	1	121220	+		47752	18066	31719	31848	48351	48351					0.10114368031076992
VTGNFILRK	9	Unmodified	_VTGNFILRK_					0	0	0		FBXO22|p.R367W|1|0.24|ENSG00000167196|chr15:75932989-75932989|C/T|missense_variant;ENSG00000167196|ENST00000308275|FBXO22	FBXO22|p.R367W|1|0.24|ENSG00000167196|chr15:75932989-75932989|C/T|missense_variant	FBXO22|p.R367W|1|0.24|ENSG00000167196|chr15:75932989-75932989|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.3200073242188	2	524.319109	1046.62366	-1.2659	-0.00066375	2.6326	0.0013803	1.3667	0.00071658	524.3205610133734	20.305	0.14382	20.305	20.251	20.395	0					6	3	2	0	0	0	0.40353	1	5694	5694		26.693	0	1	113870			47753	5977	31720	31849	48352	48352					0.10221728468172842
VTGPFAPNVL	10	Unmodified	_VTGPFAPNVL_					0	0	0			REV__ZP2|p.Q43R|1|0.15|ENSG00000103310|chr16:21211330-21211330|T/C|missense_variant	REV__ZP2|p.Q43R|1|0.15|ENSG00000103310|chr16:21211330-21211330|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.7892150878906	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.831	1	28.831	28.331	29.331	0								0	0	0	0.24873	1	10491	10491		58.23	7.0372	1		+		47754	13672	31721	31850	48353	48353					0.04834644448601466
VTGPKKTY	8	Unmodified	_VTGPKKTY_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.2577209472656	2	447.258185	892.501818	-0.12755	-5.7049E-05	-0.4568	-0.00020431	-0.58436	-0.00026136	447.25784998140114	25.893	0.19584	25.893	25.755	25.951	0					6	2	3	0	0	0	0.5676	1	9214	9214		53.351	0.41475	1	263940			47755	4652	31722	31851	48354	48354					0.05126686385813173
VTGPLVLNR	9	Unmodified	_VTGPLVLNR_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant;ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENST00000553205.1_1_12:112843569-112844143:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.25360107421875	2	484.798009	967.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.388	1	32.388	31.888	32.888	0								0	0	0	0.19749	1	10469	10469		51.335	0	1				47756	1792	31723	31852	48355	48355					0.09637753059791976
VTGPMGRSTPV	11	Unmodified	_VTGPMGRSTPV_					0	0	0			REV__PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant	REV__PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.2880859375	2	551.289691	1100.56483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.908	1	33.908	33.408	34.408	0								0	0	0	0.41424	1	11410	11410		33.922	3.418	1		+		47757	13979	31724	31853	48356	48356					0.018568841115438772
VTGPSASPPPH	11	Unmodified	_VTGPSASPPPH_					0	0	0		ENST00000458176.5_1_X:123095593-123156435:+|nuORF	ENST00000458176.5_1_X:123095593-123156435:+|nuORF	ENST00000458176.5_1_X:123095593-123156435:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.767578125	2	523.766906	1045.51926	1.0233	0.00053599	-0.39862	-0.00020878	0.62472	0.00032721	523.7665215772415	17.697	0.57174	17.697	17.5	18.072	0					26	11	3	0	0	0	0.61618	1	5270	5270		35.618	1.4457	1	288430			47758	9708	31725	31854	48357	48357					-0.0016801807919364364
VTGPSQISK	9	Unmodified	_VTGPSQISK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.75836181640625	2	458.758549	915.502546	0.79495	0.00036469	-1.0594	-0.00048603	-0.26448	-0.00012133	458.75808394315277	20.238	0.65734	20.238	19.92	20.577	0					21	14	3	0	0	0	0.21263	1	6267	6267		60.118	5.3419	1	310110			47759	11514	31726	31855	48358	48358					0.041414810348555875
VTGTIGPT	8	Unmodified	_VTGTIGPT_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.20947265625	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.337	1	56.337	55.837	56.837	0								0	0	0	1.7419	1	21148	21148		26.796	0	1				47760	3008	31727	31856	48359	48359					0.019344490519983992
VTGTNTLKGNV	11	Unmodified	_VTGTNTLKGNV_					0	0	0			REV__GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant	REV__GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.3082275390625	2	552.306395	1102.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.16	1	15.16	14.66	15.66	0								0	0	0	0.36657	1	3342	3342		42.864	6.4175	1		+		47761	17117	31728	31857	48360	48360					0.05104209155092576
VTGYTIRK	8	Unmodified	_VTGYTIRK_					0	0	0		ENST00000315366.7_1_4:114823012-114823069:-|nuORF	ENST00000315366.7_1_4:114823012-114823069:-|nuORF	ENST00000315366.7_1_4:114823012-114823069:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.2767639160156	2	469.276909	936.539266	0.23337	0.00010952	-0.48447	-0.00022735	-0.2511	-0.00011783	469.2766410651704	19.369	0.18374	19.369	19.308	19.492	0					10	4	3	0	0	0	0.46905	1	5841	5841		63.306	9.9548	1	539900			47762	8579	31729	31858	48361	48361					0.06845777651415119
VTHAPALP	8	Unmodified	_VTHAPALP_					0	0	0			REV__ENST00000389005.5_1_17:3716188-3716341:-|nuORF	REV__ENST00000389005.5_1_17:3716188-3716341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	403.2317810058594	2	403.231971	804.449388	-0.58913	-0.00023755	0.013753	5.5455E-06	-0.57537	-0.00023201	403.23199191389415	21.198	0.21085	21.198	21.093	21.304	0					8	4	2	0	0	0	0.74117	1	6875	6875		28.254	0	1	194890	+		47763	18805	31730	31859	48362	48362					0.03934148042844754
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.7756958007812	2	543.774928	1085.5353	1.824	0.00099186	0.086648	4.7117E-05	1.9107	0.001039	543.7748593434119	13.672	0.078738	13.672	13.626	13.705	0					9	4	3	0	0	0	0.081397	1	2703	2703		96.665	30.862	1	129510			47764	11735	31731	31860	48363	48363					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8522033691406	3	362.852377	1085.5353	0.10448	3.7912E-05	-1.1005	-0.00039933	-0.99605	-0.00036142	362.8520145481189	13.678	0.060425	13.678	13.637	13.698	0					5	3	2	0	0	0	0.60147	1	2711	2711		34.087	9.5673	1	55369			47765	11735	31731	31860	48364	48364					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7752075195312	2	543.774928	1085.5353	1.8776	0.001021	-1.3531	-0.00073579	0.52446	0.00028519	543.7742352688782	13.979	0.29825	13.979	13.897	14.196	0					14	7	3	0	0	0	0.015306	1	3314	3314		128.6	51.756	1	1773500			47766	11735	31731	31860	48365	48365					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	362.8524169921875	3	362.852377	1085.5353	0.47869	0.00017369	-0.25991	-9.4309E-05	0.21878	7.9384E-05	362.8522466120274	13.973	0.1805	13.973	13.924	14.104	0					7	4	2	0	0	0	0.2602	1	3306	3306		72.096	12.165	1	902300			47767	11735	31731	31860	48366	48366					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.775146484375	2	543.774928	1085.5353	1.0801	0.00058736	-0.47527	-0.00025844	0.60487	0.00032892	543.774674717087	13.897	0.26639	13.897	13.84	14.107	0					12	5	4	0	0	0	0.0084686	1	3497	3497		152.06	91.943	1	851930			47768	11735	31731	31860	48367	48367					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.7755737304688	2	543.774928	1085.5353	2.0491	0.0011143	0.14859	8.0798E-05	2.1977	0.0011951	543.7749907755771	13.715	0.10113	13.715	13.674	13.775	0					12	5	3	0	0	0	0.13022	1	2792	2792		88.177	31.456	1	181180			47769	11735	31731	31860	48368	48368					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	543.775390625	2	543.774928	1085.5353	1.0846	0.00058977	0.65108	0.00035404	1.7357	0.00094381	543.7754655534698	13.732	0.066281	13.732	13.685	13.751	0					5	3	2	0	0	0	0.36432	1	2800	2800		56.434	14.038	1	57838			47770	11735	31731	31860	48369	48369					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7753295898438	2	543.774928	1085.5353	0.60075	0.00032667	0.2933	0.00015949	0.89405	0.00048616	543.7751183912857	13.923	0.2561	13.923	13.817	14.073	0					12	5	3	0	0	0	0.01242	1	3338	3338		134.77	55.053	1	1729200			47771	11735	31731	31860	48370	48370					-0.004043566329528403
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.7753295898438	2	543.774928	1085.5353	1.9966	0.0010857	-1.1378	-0.00061868	0.85885	0.00046702	543.7742987605089	13.906	0.20825	13.906	13.848	14.056	0					5	4	2	0	0	0	0.026439	1	3351	3351		120.31	54.503	1	622770			47772	11735	31731	31860	48371	48371					-0.004043566329528403
VTHFIRKIS	9	Unmodified	_VTHFIRKIS_					0	0	0			REV__nc|ENSG00000100353|O15371-2|EIF3D	REV__nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.5572509765625	3	367.557348	1099.65021	0.75911	0.00027902	-1.2797	-0.00047037	-0.52062	-0.00019136	367.55699562070515	35.7	0.38082	35.7	35.495	35.876	0					15	10	2	0	0	0	0.56424	1	13392	13392		25.574	0	1	44976	+		47773	13547	31732	31861	48372	48372					0.10437417359503343
VTHHVSVTK	9	Unmodified	_VTHHVSVTK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.28546142578125	2	504.285266	1006.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.678	1	14.678	14.178	15.178	0								0	0	0	0.24544	1	3062	3062		44.377	12.847	1				47774	5733	31733	31862	48373	48373					0.05296278537366561
VTHHVSVTK	9	Unmodified	_VTHHVSVTK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5258483886719	3	336.525936	1006.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.662	1	14.662	14.162	15.162	0								0	0	0	0.20989	1	3054	3054		74.165	12.4	1				47775	5733	31733	31862	48374	48374					0.05296278537366561
VTHHVSVTK	9	Unmodified	_VTHHVSVTK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2852478027344	2	504.285266	1006.55598	0.7713	0.00038896	-0.81199	-0.00040948	-0.04069	-2.0519E-05	504.28480431446985	14.943	0.2702	14.943	14.863	15.133	0					11	6	3	0	0	0	0.013878	1	3762	3762		132.76	69.224	1	1072700			47776	5733	31733	31862	48375	48375					0.05296278537366561
VTHHVSVTK	9	Unmodified	_VTHHVSVTK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	336.5258483886719	3	336.525936	1006.55598	0.51637	0.00017377	-0.85349	-0.00028722	-0.33712	-0.00011345	336.5256433991582	14.938	0.21781	14.938	14.851	15.068	0					8	5	2	0	0	0	0.30841	1	3756	3756		65.157	34.84	1	995540			47777	5733	31733	31862	48376	48376					0.05296278537366561
VTHHVSVTK	9	Unmodified	_VTHHVSVTK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.28509521484375	2	504.285266	1006.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.717	1	14.717	14.217	15.217	0								0	0	0	0.11736	1	3172	3172		67.494	23.377	1				47778	5733	31733	31862	48377	48377					0.05296278537366561
VTHHVSVTK	9	Unmodified	_VTHHVSVTK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.2861022949219	2	504.285266	1006.55598	0.12082	6.0928E-05	0.32167	0.00016222	0.4425	0.00022314	504.28579730603707	14.69	0.075613	14.69	14.656	14.731	0					4	2	2	0	0	0	0.10915	1	3168	3168		77.318	38.065	1	88774			47779	5733	31733	31862	48378	48378					0.05296278537366561
VTHHVSVTK	9	Unmodified	_VTHHVSVTK_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2850341796875	2	504.285266	1006.55598	-0.38911	-0.00019622	0.11396	5.7466E-05	-0.27515	-0.00013875	504.2851971251969	14.868	0.26803	14.868	14.811	15.079	0					6	5	2	0	0	0	0.0088974	1	3805	3805		143.37	57.512	1	556010			47780	5733	31733	31862	48379	48379					0.05296278537366561
VTHIESSQI	9	Unmodified	_VTHIESSQI_					0	0	0			REV__nc|ENSG00000095794|Q03060-1|CREM	REV__nc|ENSG00000095794|Q03060-1|CREM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	338.5134582519531	3	338.513585	1012.51892	0.53145	0.0001799	-0.83353	-0.00028216	-0.30208	-0.00010226	338.51325703822926	20.653	0.11764	20.653	20.595	20.713	0					4	2	2	0	0	0	0.18605	1	6738	6738		69.628	4.1622	1	315740	+		47781	20952	31734	31863	48380	48380					0.013165622009523759
VTHISLEEP	9	Unmodified	_VTHISLEEP_					0	0	0		ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.7692260742188	2	512.769114	1023.52368	-1.6774	-0.00086011	-3.4527	-0.0017704	-5.1301	-0.0026306	513.2686845360417	35.041	0.42024	35.041	34.864	35.285	0					24	13	3	0	0	0	0.47038	1	12433	12433		35.618	2.1027	1	173130			47782	4312	31735	31864	48381	48381					0.01285446343717922
VTHIVYKAP	9	Unmodified	_VTHIVYKAP_					0	0	0			REV__nc|ENSG00000172264|A1Z1Q3|MACROD2	REV__nc|ENSG00000172264|A1Z1Q3|MACROD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2993774414062	2	514.300384	1026.58622	0.61703	0.00031734	-1.0945	-0.00056288	-0.47743	-0.00024554	514.2998260162154	35.157	0.33936	35.157	34.952	35.291	0					15	10	2	0	0	0	0.54267	1	12481	12481		27.882	1.1893	1	72645	+		47783	16455	31736	31865	48382	48382					0.07398637202550162
VTHQSVGVVK	10	Unmodified	_VTHQSVGVVK_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28916682-28918849:+|nuORF;ENST00000567869.1_1_15:28436080-28447805:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.3064575195312	2	527.306198	1052.59784	2.0987	0.0011067	-1.5121	-0.00079736	0.58655	0.00030929	527.3053249631166	18.17	0.13858	18.17	18.082	18.221	0					10	3	4	0	0	0	0.41055	1	5279	5279		55.084	7.4266	1	517390			47784	3560	31737	31866	48383	48383					0.07364834225904815
VTHQSVGVVK	10	Unmodified	_VTHQSVGVVK_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28916682-28918849:+|nuORF;ENST00000567869.1_1_15:28436080-28447805:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.3067016601562	2	527.306198	1052.59784	0.94286	0.00049718	-0.14128	-7.4499E-05	0.80158	0.00042268	527.3062082342177	18.114	0.11728	18.114	18.055	18.173	0					4	2	2	0	0	0	0.010724	1	5513	5513		140.11	52.416	1	381790			47785	3560	31737	31866	48384	48384					0.07364834225904815
VTHQSVGVVK	10	Unmodified	_VTHQSVGVVK_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28916682-28918849:+|nuORF;ENST00000567869.1_1_15:28436080-28447805:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.3062133789062	2	527.306198	1052.59784	0.65049	0.00034301	-0.38903	-0.00020514	0.26146	0.00013787	527.3058728635771	18.083	0.11469	18.083	18.027	18.142	0					4	2	2	0	0	0	0.12383	1	5357	5357		91.265	24.836	1	662930			47786	3560	31737	31866	48385	48385					0.07364834225904815
VTHSFHLVK	9	Unmodified	_VTHSFHLVK_					0	0	0			REV__SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	REV__SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.303955078125	2	534.303458	1066.59236	3.3804	0.0018062	-2.8513	-0.0015234	0.52915	0.00028273	534.3019187890326	21.361	0.26492	21.361	21.206	21.471	0					13	5	4	0	0	0	0.25716	1	6958	6958		54.776	7.119	1	458040	+		47787	17539	31738	31867	48386	48386					0.061731554340894945
VTHTNIPTH	9	Unmodified	_VTHTNIPTH_					0	0	0			REV__ENST00000313349.3_1_2:64862240-64862327:-|nuORF	REV__ENST00000313349.3_1_2:64862240-64862327:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.2670593261719	2	510.267073	1018.51959	0.96516	0.00049249	-0.30674	-0.00015652	0.65842	0.00033597	510.2673593805311	13.342	0.37157	13.342	13.265	13.636	0					19	10	4	0	0	0	0.087582	1	3010	3010		82.305	2.854	1	771450	+		47788	18284	31739	31868	48387	48387					0.011074016406610099
VTIACLGAL	9	Unmodified	_VTIACLGAL_					0	0	0		ENST00000296479.9_1_3:51747995-51752125:+|nuORF;ENSG00000164082|ENST00000395052|GRM2	ENST00000296479.9_1_3:51747995-51752125:+|nuORF	ENST00000296479.9_1_3:51747995-51752125:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.74835205078125	2	430.749139	859.483725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.969	1	36.969	36.469	37.469	0								0	0	0	0.082189	1	13983	13983		76.847	13.54	1				47789	5652	31740	31869	48388	48388					0.04836228139447485
VTIAITGADI	10	Unmodified	_VTIAITGADI_					0	0	0		tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.2809753417969	2	487.281857	972.549162	-1.2441	-0.00060623	0.43089	0.00020996	-0.81322	-0.00039627	487.2819314077035	33.235	0.27378	33.235	33.144	33.418	0					15	11	2	0	0	0	0.55603	1	11143	11143		39.253	0	1	132840			47790	23044	31741	31870	48389	48389					0.061789208661252815
VTIANATAL	9	Unmodified	_VTIANATAL_					0	0	0			REV__ENSG00000230561|ENST00000514853|CCDC192	REV__ENSG00000230561|ENST00000514853|CCDC192	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2550048828125	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.673	1	31.673	31.173	32.173	0								0	0	0	0.10826	1	11556	11556		69.628	7.5202	1		+		47791	17643	31742	31871	48390	48390					0.055383825231729134
VTIDSCVFIA	10	Unmodified	_VTIDSCVFIA_					0	0	0		ENST00000590930.5_1_10:101953005-101953116:-|nuORF	ENST00000590930.5_1_10:101953005-101953116:-|nuORF	ENST00000590930.5_1_10:101953005-101953116:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.7413330078125	2	534.275718	1066.53688	1.1081	0.00059204	3.5442	0.0018936	4.6523	0.0024856	534.2775843581865	25.542	0.14473	25.542	25.474	25.619	0					8	4	2	0	0	0	0.58189	1	8121	8121		11.511	0	1	89470			47792	10959	31743	31872	48391	48391					0.006275611314549678
VTIEGTSAVYK	11	Unmodified	_VTIEGTSAVYK_					0	0	0		ENSG00000125686|ENST00000300651|MED1;nc|ENSG00000125686|Q15648-3|MED1;MED1|p.G570Vfs*9|1|0.06|ENSG00000125686|chr17:39410512-39410512|C/-|frameshift_variant;MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant;MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant;MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	ENSG00000125686|ENST00000300651|MED1;MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	584.3170776367188	2	584.316428	1166.6183	1.2344	0.00072126	-0.8425	-0.00049229	0.39186	0.00022897	584.3159773189902	30.796	0.18548	30.796	30.742	30.928	0					6	4	2	0	0	0	0.25906	1	11155	11155		58.246	19.493	1	119840			47793	3427;11354	31744	31873	48392	48392					0.04165960095042465
VTIEGTSAVYK	11	Unmodified	_VTIEGTSAVYK_					0	0	0		ENSG00000125686|ENST00000300651|MED1;nc|ENSG00000125686|Q15648-3|MED1;MED1|p.G570Vfs*9|1|0.06|ENSG00000125686|chr17:39410512-39410512|C/-|frameshift_variant;MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant;MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant;MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	ENSG00000125686|ENST00000300651|MED1;MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	584.31640625	2	584.316428	1166.6183	1.191	0.00069592	-0.92856	-0.00054257	0.26245	0.00015335	584.8172661035549	30.813	0.13892	30.813	30.742	30.88	0					5	3	2	0	0	0	0.20322	1	11560	11560		83.647	14.019	1	93079			47794	3427;11354	31744	31873	48393	48393					0.04165960095042465
VTIEGTSAVYK	11	Unmodified	_VTIEGTSAVYK_					0	0	0		ENSG00000125686|ENST00000300651|MED1;nc|ENSG00000125686|Q15648-3|MED1;MED1|p.G570Vfs*9|1|0.06|ENSG00000125686|chr17:39410512-39410512|C/-|frameshift_variant;MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant;MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant;MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	ENSG00000125686|ENST00000300651|MED1;MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.31640625	2	584.316428	1166.6183	0.11602	6.7791E-05	0.014167	8.2781E-06	0.13019	7.6069E-05	584.3162787570881	30.789	0.16858	30.789	30.68	30.848	0					8	3	3	0	0	0	0.058993	1	11449	11449		104.01	26.696	1	277370			47795	3427;11354	31744	31873	48394	48394					0.04165960095042465
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.8302001953125	2	552.82984	1103.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.02	1	27.02	26.52	27.52	0								0	0	0	0.015099	1	8281	8281		101.25	26.998	1				47796	4933	31745	31874	48395	48395					0.09745113496887825
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.8302001953125	2	552.82984	1103.64513	0.61986	0.00034268	0.13694	7.5706E-05	0.7568	0.00041838	552.8300311273954	27.291	0.34607	27.291	27.196	27.542	0					22	8	4	0	0	0	0.010125	1	9520	9520		132.76	22.638	1	1612800			47797	4933	31745	31874	48396	48396					0.09745113496887825
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.8289794921875	2	552.82984	1103.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.056	1	27.056	26.556	27.556	0								0	0	0	0.328	1	8579	8579		26.693	11.051	1				47798	4933	31745	31874	48397	48397					0.09745113496887825
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.8301391601562	2	552.82984	1103.64513	0.061218	3.3843E-05	0.73833	0.00040817	0.79955	0.00044201	552.8303490581123	27.296	0.21854	27.296	27.186	27.405	0					7	4	2	0	0	0	0.057264	1	9883	9883		85.161	5.4482	1	465960			47799	4933	31745	31874	48398	48398					0.09745113496887825
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.8887634277344	3	368.888986	1103.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.167	1	27.167	26.667	27.667	0								0	0	0	0.38879	1	8853	8853		33.922	5.8401	1				47800	4933	31745	31874	48399	48399					0.09745113496887825
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.83056640625	2	552.82984	1103.64513	-1.236	-0.0006833	2.7038	0.0014948	1.4678	0.00081147	552.8311809056883	27.102	0.16108	27.102	27.003	27.164	0					9	4	3	0	0	0	0.087581	1	8822	8822		85.862	18.368	1	143690			47801	4933	31745	31874	48400	48400					0.09745113496887825
VTIGGFSVTK	10	Unmodified	_VTIGGFSVTK_					0	0	0			REV__ARPP21|p.A382V|1|0.26|ENSG00000172995|chr3:35721754-35721754|C/T|missense_variant	REV__ARPP21|p.A382V|1|0.26|ENSG00000172995|chr3:35721754-35721754|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.7904357910156	2	504.78985	1007.56515	0.11448	5.7787E-05	1.4459	0.00072987	1.5604	0.00078766	504.7906036320282	35.271	0.19664	35.271	35.192	35.388	0					14	7	3	0	0	0	0.22691	1	12557	12557		76.17	0	1	90867	+		47802	12226	31746	31875	48401	48401					0.061666271030503594
VTIGGFSVTK	10	Unmodified	_VTIGGFSVTK_					0	0	0			REV__ARPP21|p.A382V|1|0.26|ENSG00000172995|chr3:35721754-35721754|C/T|missense_variant	REV__ARPP21|p.A382V|1|0.26|ENSG00000172995|chr3:35721754-35721754|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.7899169921875	2	504.78985	1007.56515	-0.34622	-0.00017477	0.18515	9.346E-05	-0.16107	-8.1309E-05	504.7899904012223	35.441	0.32355	35.441	35.33	35.654	0					17	6	4	0	0	0	0.13663	1	13673	13673		89.029	2.1473	1	962570	+		47803	12226	31746	31875	48402	48402					0.061666271030503594
VTIIRIILV	9	Unmodified	_VTIIRIILV_					0	0	0			REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant	REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	347.2459716796875	3	347.24611	1038.7165	-0.7028	-0.00024404	0.53901	0.00018717	-0.16379	-5.6874E-05	347.24622055660774	22.003	0.29097	22.003	21.909	22.2	0					26	9	4	0	0	0	0.44593	1	6388	6388		37.812	6.2817	1	1316100	+		47804	21411	31747	31876	48403	48403					0.1986923320155256
VTIITSGAVVA	11	Unmodified	_VTIITSGAVVA_					0	0	0		ENSG00000065029|ENST00000373953|ZNF76;nc|ENSG00000065029|P36508-2|ZNF76;ENST00000229405.8_1_6:35262154-35262442:+|nuORF	ENSG00000065029|ENST00000373953|ZNF76	ENSG00000065029|ENST00000373953|ZNF76	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.8118286132812	2	515.810782	1029.60701	-0.08487	-4.3777E-05	2.0542	0.0010596	1.9694	0.0010158	515.8118985498107	38.84	0.20392	38.84	38.707	38.911	0					16	11	2	0	0	0	0.66915	1	13073	13073		14.865	0	1	77051			47805	1362	31748	31877	48404	48404					0.09339182791586609
VTIKALKEK	9	Unmodified	_VTIKALKEK_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;ENST00000497815.5_1_7:101459310-101755188:+|nuORF;CUX1|p.A591Qfs*9|1|0.06|ENSG00000257923|chr7:102197181-102197182|-/CAGT|frameshift_variant;nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.8937072753906	3	343.893737	1028.65938	0.50582	0.00017395	-0.69347	-0.00023848	-0.18765	-6.4532E-05	343.89348771478603	20.236	0.15854	20.236	20.18	20.339	0					8	3	3	0	0	0	0.085655	1	6256	6256		82.75	13.123	1	697360			47806	720;10693	31749	31878	48405	48405					0.14619765925181127
VTIKALKEK	9	Unmodified	_VTIKALKEK_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;ENST00000497815.5_1_7:101459310-101755188:+|nuORF;CUX1|p.A591Qfs*9|1|0.06|ENSG00000257923|chr7:102197181-102197182|-/CAGT|frameshift_variant;nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.3368530273438	2	515.336967	1028.65938	-0.49931	-0.00025731	0.1993	0.00010271	-0.30001	-0.0001546	515.3371288154973	20.153	0.16686	20.153	20.045	20.212	0					6	3	2	0	0	0	0.048471	1	6497	6497		95.815	10.654	1	523350			47807	720;10693	31749	31878	48406	48406					0.14619765925181127
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.826904296875	2	551.826963	1101.63937	0.59478	0.00032822	-0.83381	-0.00046012	-0.23903	-0.0001319	551.826478068839	21.649	0.88058	21.649	21.55	22.43	0					47	20	5	0	0	0	0.0094828	1	6897	6897		144.77	23.9	1	36018000			47808	1976	31750	31879	48407	48407					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.8272705078125	2	551.826963	1101.63937	0.25886	0.00014285	0.33641	0.00018564	0.59527	0.00032848	551.8270401204691	21.354	0.27105	21.354	21.282	21.553	0					21	8	5	0	0	0	0.01554	1	6106	6106		128.35	24.291	1	3507400			47809	1976	31750	31879	48408	48408					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.8270263671875	2	551.826963	1101.63937	-0.36925	-0.00020376	0.59927	0.00033069	0.23002	0.00012693	551.8273169978901	21.359	0.1467	21.359	21.271	21.418	0					13	4	4	0	0	0	0.00086381	1	6118	6118		183.72	82.469	1	644160			47810	1976	31750	31879	48409	48409					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8270874023438	2	551.826963	1101.63937	1.6203	0.00089413	-1.5517	-0.00085629	0.068571	3.7839E-05	551.8260324186082	21.567	0.36763	21.567	21.458	21.825	0					19	7	3	0	0	0	0.0012279	1	7156	7156		180.09	17.838	1	26427000			47811	1976	31750	31879	48410	48410					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8270263671875	2	551.826963	1101.63937	0.11062	6.1042E-05	0.40764	0.00022495	0.51826	0.00028599	551.8271076494359	21.55	0.3682	21.55	21.441	21.809	0					18	7	3	0	0	0	0.010245	1	7152	7152		141.91	15.668	1	8049100			47812	1976	31750	31879	48411	48411					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	368.2203674316406	3	368.220401	1101.63937	-0.11067	-4.0751E-05	-0.20342	-7.4904E-05	-0.31409	-0.00011565	368.2202944132991	21.44	0.19895	21.44	21.343	21.542	0					14	4	4	0	0	0	0.27406	1	6205	6205		82.494	29.405	1	2085000			47813	1976	31750	31879	48412	48412					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.8272705078125	2	551.826963	1101.63937	-1.3068	-0.00072113	1.5494	0.00085499	0.24258	0.00013386	551.8277703798584	21.431	0.39033	21.431	21.329	21.719	0					19	9	4	0	0	0	0.00034343	1	6198	6198		188.91	39.926	1	7385500			47814	1976	31750	31879	48413	48413					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.2203674316406	3	368.220401	1101.63937	0.9262	0.00034105	-1.214	-0.000447	-0.28776	-0.00010596	368.22004024488416	21.578	0.81787	21.578	21.421	22.239	0					38	16	4	0	0	0	0.4287	1	7032	7032		65.278	25.404	1	17310000			47815	1976	31750	31879	48414	48414					0.09261970194552305
VTIKVLGEEL	10	Unmodified	_VTIKVLGEEL_					0	0	0		ENST00000367256.9_1_6:152443573-152639413:-|nuORF	ENST00000367256.9_1_6:152443573-152639413:-|nuORF	ENST00000367256.9_1_6:152443573-152639413:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.8308715820312	2	550.831714	1099.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.642	1	16.642	16.142	17.142	0								0	0	0	0.3963	1	3991	3991		14.137	0	1				47816	8912	31751	31880	48415	48415					0.10303738480092761
VTILPEAPPQ	10	Unmodified	_VTILPEAPPQ_					0	0	0			REV__nc|ENSG00000121753|O60241-4|ADGRB2	REV__nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.3054809570312	2	532.802957	1063.59136	-0.35784	-0.00019066	0.56189	0.00029938	0.20406	0.00010872	533.3038263890652	26.263	0.24315	26.263	26.113	26.356	0					10	7	2	0	0	0	0.65213	1	8255	8255		27.882	1.1893	1	51487	+		47817	14316	31752	31881	48416	48416					0.062108962745242025
VTINEKSY	8	Unmodified	_VTINEKSY_					0	0	0			REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.25048828125	2	477.250557	952.486562	-1.4953	-0.00071365	1.7316	0.00082639	0.23622	0.00011273	477.2513499510143	30.091	0.21456	30.091	29.984	30.198	0					16	8	2	0	0	0	0.51384	1	9844	9844		58.782	5.4305	1	151190	+		47818	21894	31753	31882	48417	48417					0.008417747979478918
VTIPAGATHIL	11	Unmodified	_VTIPAGATHIL_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.88525390625	3	364.885241	1091.63389	0.74615	0.00027226	-1.0539	-0.00038455	-0.30775	-0.00011229	364.88494164541993	26.435	0.22087	26.435	26.326	26.547	0					13	5	3	0	0	0	0.72624	1	9142	9142		25.126	1.7481	1	453450			47819	5287	31754	31883	48418	48418					0.09174291402769086
VTIPMEEPLVD	11	Unmodified	_VTIPMEEPLVD_					0	0	0			REV__ENSG00000128578|ENST00000249344|STRIP2	REV__ENSG00000128578|ENST00000249344|STRIP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.8822326660156	3	414.881057	1241.62134	2.8164	0.0011685	-0.11166	-4.6326E-05	2.7047	0.0011221	414.88098721597726	13.462	0.57303	13.462	13.176	13.749	0					37	12	5	0	0	0	0.52595	1	3078	3078		42.338	42.338	1	7351000	+		47820	14518	31755	31884	48419	48419					0.010194671575391112
VTIQKQLLY	9	Unmodified	_VTIQKQLLY_					0	0	0		ENSG00000184675|ENST00000374869|AMER1;AMER1|p.E752*|1|0.4|ENSG00000184675|chrX:64191034-64191035|-/G|frameshift_variant;nc|ENSG00000184675|Q5JTC6-2|AMER1;AMER1|p.G1103Vfs*36|1|0.05|ENSG00000184675|chrX:64189979-64189980|-/TATATATATATATATATATACACACA|frameshift_variant	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.3349609375	2	553.334424	1104.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.516	1	29.516	29.016	30.016	0								0	0	0	0.29774	1	9939	9939		35.618	0.41757	1				47821	7030	31756	31885	48420	48420					0.10615462062582992
VTIQTVTVK	9	Unmodified	_VTIQTVTVK_					0	0	0			REV__ENST00000457388.1_1_10:37627476-37627722:+|nuORF	REV__ENST00000457388.1_1_10:37627476-37627722:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.8050842285156	2	494.8055	987.596446	-0.42481	-0.0002102	1.0346	0.00051191	0.60977	0.00030172	494.80629171201963	23.349	0.1925	23.349	23.294	23.486	0					8	4	3	0	0	0	0.21263	1	7752	7752		60.118	0	1	441350	+		47822	15971	31757	31886	48421	48421					0.10215200137145075
VTISHAIGR	9	Unmodified	_VTISHAIGR_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	477.2798156738281	2	477.279983	952.545414	-0.10864	-5.185E-05	-2.6133	-0.0012473	-2.7219	-0.0012991	477.27901967950476	22.614	0.10318	22.614	22.554	22.657	0					6	3	2	0	0	0	0.098791	1	6416	6416		79.713	33.761	1	91213			47823	1004	31758	31887	48422	48422					0.06724295882941078
VTISHAIGR	9	Unmodified	_VTISHAIGR_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2797546386719	2	477.279983	952.545414	-0.33213	-0.00015852	-0.90644	-0.00043263	-1.2386	-0.00059115	477.27938464672735	22.927	0.1349	22.927	22.834	22.969	0					9	3	3	0	0	0	0.010494	1	7525	7525		139.97	49.194	1	763510			47824	1004	31758	31887	48423	48423					0.06724295882941078
VTISSVEKK	9	Unmodified	_VTISSVEKK_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	495.7948303222656	2	495.795132	989.575711	-0.38309	-0.00018993	0.16023	7.9439E-05	-0.22286	-0.0001105	495.7950415215457	20.559	0.19094	20.559	20.419	20.61	0					6	4	2	0	0	0	0.27249	1	6410	6410		52.937	3.4952	1	390000			47825	4583	31759	31888	48424	48424					0.08050609757481197
VTISSVEKK	9	Unmodified	_VTISSVEKK_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.794921875	2	495.795132	989.575711	-0.76344	-0.00037851	0.66754	0.00033096	-0.095902	-4.7548E-05	495.79536603375806	20.453	0.11596	20.453	20.396	20.512	0					4	2	2	0	0	0	0.0406	1	6641	6641		98.629	8.2596	1	385120			47826	4583	31759	31888	48425	48425					0.08050609757481197
VTITDLQGL	9	Unmodified	_VTITDLQGL_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2737731933594	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.166	1	40.166	39.666	40.666	0								0	0	0	0.15687	1	15309	15309		58.23	0	1				47827	8035	31760	31889	48426	48426					0.05258634349092972
VTIVMHIYK	9	Unmodified	_VTIVMHIYK_					0	0	0		ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3178100585938	2	552.31772	1102.62089	0.086337	4.7686E-05	0.8629	0.00047659	0.94923	0.00052428	552.3177344572644	33.403	0.1063	33.403	33.326	33.433	0					4	2	2	0	0	0	0.034359	1	12780	12780		104.75	37.253	1	66443			47828	10860	31761	31890	48427	48427					0.07368137019011556
VTKDVKTN	8	Unmodified	_VTKDVKTN_					0	0	0			REV__ENST00000390555.3_1_14:106135325-106136152:-|nuORF	REV__ENST00000390555.3_1_14:106135325-106136152:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7582092285156	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.306	1	20.306	19.806	20.806	0								0	0	0	1.7419	1	5412	5412		37.159	3.6435	1		+		47829	18811	31762	31891	48428	48428					0.046934810348602696
VTKEKAAKP	9	Unmodified	_VTKEKAAKP_					0	0	0			REV__MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant	REV__MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2974548339844	2	486.297842	970.581131	-0.28842	-0.00014026	-0.8636	-0.00041997	-1.152	-0.00056023	486.29762295112795	37.723	0.2604	37.723	37.588	37.848	0					12	8	2	0	0	0	0.16002	1	14317	14317		66.429	18.772	1	235370	+		47830	14631	31763	31892	48429	48429					0.09466333339935318
VTKHWQVQ	8	Unmodified	_VTKHWQVQ_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1;SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2811889648438	2	513.279983	1024.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.496	1	14.496	13.996	14.996	0								0	0	0	1.7419	1	3619	3619		44.117	3.3386	1				47831	5363	31764	31893	48430	48430					0.03412295882935723
VTKIAKSVIA	10	Unmodified	_VTKIAKSVIA_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	343.8936767578125	3	343.893737	1028.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.911	1	19.911	19.411	20.411	0								0	0	0	0.3998	1	5240	5240		30.569	1.3988	1				47832	8097	31765	31894	48431	48431					0.14619765925203865
VTKIPFGVK	9	Unmodified	_VTKIPFGVK_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.2099609375	3	330.211177	987.611703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.194	1	13.194	12.694	13.694	0								0	0	0	0.34845	1	3153	3153		25.574	1.0549	1		+		47833	17606	31766	31895	48432	48432					0.11740111724986946
VTKIQLRL	8	Unmodified	_VTKIQLRL_					0	0	0		LOXL2|p.A54T|1|0.09|ENSG00000134013|chr8:23368192-23368192|C/T|missense_variant	LOXL2|p.A54T|1|0.09|ENSG00000134013|chr8:23368192-23368192|C/T|missense_variant	LOXL2|p.A54T|1|0.09|ENSG00000134013|chr8:23368192-23368192|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.2181701660156	3	324.218443	969.633501	0.55837	0.00018103	-0.68307	-0.00022146	-0.1247	-4.043E-05	324.2182033909939	23.036	0.71679	23.036	22.628	23.344	0					30	14	4	0	0	0	0.73426	1	7870	7870		31.53	0	1	2277000			47834	11320	31767	31896	48433	48433					0.14746916473552574
VTKKEVVI	8	Unmodified	_VTKKEVVI_					0	0	0		ENST00000530043.5_2_11:126081674-126099218:+|nuORF;ENST00000525728.5_1_11:126081668-126110710:+|nuORF;ENST00000528985.5_2_11:126081668-126103543:+|nuORF;ENST00000533050.5_2_11:126081479-126104922:+|nuORF	ENST00000530043.5_2_11:126081674-126099218:+|nuORF	ENST00000530043.5_2_11:126081674-126099218:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.2967224121094	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.589	1	41.589	41.089	42.089	0								0	0	0	1.7419	1	16553	16553		24.203	1.1603	1				47835	10363	31768	31897	48434	48434					0.11936118971038923
VTKKQRGDI	9	Unmodified	_VTKKQRGDI_					0	0	0		GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant;ENSG00000106571|ENST00000395925|GLI3	GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8141479492188	2	522.811648	1043.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.931	1	44.931	44.431	45.431	0								0	0	0	0.3428	1	17437	17437		26.693	2.4902	1				47836	2447	31769	31898	48435	48435					0.08868236600187629
VTKKRSASTP	10	Unmodified	_VTKKRSASTP_					0	0	0			REV__CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant	REV__CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.8171997070312	2	537.81693	1073.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.211	1	16.211	15.711	16.711	0								0	0	0	0.41137	1	3654	3654		15.642	0	1		+		47837	12391	31770	31899	48436	48436					0.08544219254599739
VTKLNPFLVG	10	Unmodified	_VTKLNPFLVG_					0	0	0			REV__ENSG00000169594|ENST00000345382|BNC1	REV__ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	363.2203063964844	3	363.221853	1086.64373	-2.0561	-0.00074681	-1.6478	-0.00059852	-3.7039	-0.0013453	363.22127322642496	29.249	0.25604	29.249	29.159	29.415	0					12	6	3	0	0	0	0.68218	1	9824	9824		22.58	0	1	242570	+		47838	16322	31771	31900	48437	48437					0.10387479408109357
VTKNIHYR	8	Unmodified	_VTKNIHYR_					0	0	0			REV__ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant	REV__ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.79296875	2	515.793258	1029.57196	1.6876	0.00087045	-2.2012	-0.0011354	-0.51358	-0.0002649	515.7919705155161	25.565	0.14726	25.565	25.426	25.573	0					5	3	2	0	0	0	0.73426	1	8742	8742		29.15	3.5755	1	100930	+		47839	16338	31772	31901	48438	48438					0.05835984774262215
VTKNSILK	8	Unmodified	_VTKNSILK_					0	0	0		TET1|p.K775Lfs*23|1|0.07|ENSG00000138336|chr10:68645051-68645052|-/TTAGTTAC|frameshift_variant	TET1|p.K775Lfs*23|1|0.07|ENSG00000138336|chr10:68645051-68645052|-/TTAGTTAC|frameshift_variant	TET1|p.K775Lfs*23|1|0.07|ENSG00000138336|chr10:68645051-68645052|-/TTAGTTAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.2891845703125	2	451.78711	901.559667	0.56175	0.00025379	0.28139	0.00012713	0.84314	0.00038092	451.78705627558315	23.019	0.1237	23.019	22.953	23.077	0					7	4	2	0	0	0	0.53424	1	6592	6592		56.721	0	1	58223			47840	22523	31773	31902	48439	48439					0.10494948311236385
VTKPVGGDK	9	Unmodified	_VTKPVGGDK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant;ENST00000445338.1_1_10:13633913-13634195:-|nuORF;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.7615051269531	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.743	1	13.743	13.243	14.243	0								0	0	0	0.15687	1	3197	3197		58.23	3.4536	1				47841	1792	31774	31903	48440	48440					0.05385784897475787
VTKRHVDLK	9	Unmodified	_VTKRHVDLK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	365.89276123046875	3	365.892619	1094.65603	-0.10587	-3.8738E-05	0.29136	0.00010661	0.18549	6.7869E-05	365.8927272829252	19.836	0.18862	19.836	19.743	19.932	0					7	4	2	0	0	0	0.4966	1	5475	5475		40.058	6.1365	1	354340			47842	5134;11594	31775	31904	48441	48441					0.11248515871147902
VTKRKTKCV	9	Unmodified	_VTKRKTKCV_					0	0	0		nc|ENSG00000104687|P00390-5|GSR;nc|ENSG00000104687|P00390-4|GSR;nc|ENSG00000104687|P00390-2|GSR;nc|ENSG00000104687|P00390-3|GSR;ENSG00000104687|ENST00000221130|GSR	nc|ENSG00000104687|P00390-5|GSR	nc|ENSG00000104687|P00390-5|GSR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	354.8857421875	3	354.886588	1061.63793	0.43179	0.00015324	-3.5053	-0.001244	-3.0736	-0.0010908	354.8854416913945	15.838	0.12595	15.838	15.759	15.885	0					8	5	2	0	0	0	0.53064	1	3520	3520		29.17	0	1	48896			47843	2300	31776	31905	48442	48442					0.1095805762481632
VTKRLMNC	8	Oxidation (M)	_VTKRLM(Oxidation (M))NC_		VTKRLM(1)NC		VTKRLM(110)NC	0	0	1			REV__ENSG00000177938|ENST00000317658|CAPZA3	REV__ENSG00000177938|ENST00000317658|CAPZA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.75604248046875	2	490.75443	979.494306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.639	1	22.639	22.139	23.139	0								0	0	0	1.7419	1	7384	7384		106.42	10.225	1		+		47844	16714	31777	31906	48443	48443		638			0.0037388752223250776
VTKTMAPK	8	Unmodified	_VTKTMAPK_					0	0	0			REV__ARPP21|p.A382V|1|0.26|ENSG00000172995|chr3:35721754-35721754|C/T|missense_variant	REV__ARPP21|p.A382V|1|0.26|ENSG00000172995|chr3:35721754-35721754|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.2530822753906	2	438.254588	874.494624	-3.1034	-0.0013601	-0.67907	-0.0002976	-3.7825	-0.0016577	438.2540884230185	33.21	0.27224	33.21	33.057	33.33	0					19	8	3	0	0	0	0.63077	1	11592	11592		44.117	5.3107	1	215000	+		47845	12226	31778	31907	48444	48444					0.05235630513720935
VTKVAKKTR	9	Unmodified	_VTKVAKKTR_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7;REV__nc|ENSG00000216937|Q96M83-5|CCDC7	REV__nc|ENSG00000216937|Q96M83-5|CCDC7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	344.22918701171875	3	344.229231	1029.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.474	1	21.474	20.974	21.974	0								0	0	0	0.34598	1	7126	7126		26.063	4.1035	1		+		47846	17604;21215	31779	31908	48445	48445					0.1522170387654569
VTKVLELN	8	Unmodified	_VTKVLELN_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.2606201171875	2	458.279118	914.543683	-0.98525	-0.00045152	0.1051	4.8166E-05	-0.88015	-0.00040335	458.27913937741835	34.17	0.27885	34.17	34.059	34.337	0					21	12	2	0	0	0	0.54629	1	11482	11482		55.504	0	1	267170	+		47847	14863	31780	31909	48446	48446					0.08299242074326685
VTKYSEKSP	9	Unmodified	_VTKYSEKSP_					0	0	0		sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7784423828125	2	519.776939	1037.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.371	1	20.371	19.871	20.871	0								0	0	0	0.18645	1	5715	5715		52.937	3.4007	1				47848	22455	31781	31910	48447	48447					0.022057328607616
VTLAAVGEL	9	Unmodified	_VTLAAVGEL_					0	0	0		SIGLEC8|p.G366Efs*18|1|0.16|ENSG00000105366|chr19:51454735-51454735|C/-|frameshift_variant	SIGLEC8|p.G366Efs*18|1|0.16|ENSG00000105366|chr19:51454735-51454735|C/-|frameshift_variant	SIGLEC8|p.G366Efs*18|1|0.16|ENSG00000105366|chr19:51454735-51454735|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.75848388671875	2	436.758018	871.501483	0.27649	0.00012076	-0.59131	-0.00025826	-0.31482	-0.0001375	436.757948733387	34.613	0.20503	34.613	34.503	34.708	0					7	5	2	0	0	0	0.16002	1	12265	12265		66.429	6.311	1	76867			47849	22396	31782	31911	48448	48448					0.060592666659431416
VTLDAQVTY	9	Unmodified	_VTLDAQVTY_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2641906738281	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.298	1	42.298	41.798	42.798	0								0	0	0	0.28666	1	16032	16032		37.812	0.78304	1		+		47850	14323	31783	31912	48449	48449					0.008860439694217348
VTLDAQVTY	9	Unmodified	_VTLDAQVTY_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.26361083984375	2	505.263665	1008.51278	-0.31212	-0.0001577	1.1096	0.00056066	0.79751	0.00040295	505.2641768403992	42.242	0.28934	42.242	42.143	42.433	0					15	7	3	0	0	0	0.047412	1	16832	16832		96.19	2.995	1	316930	+		47851	14323	31783	31912	48450	48450					0.008860439694217348
VTLDQVRNI	9	Unmodified	_VTLDQVRNI_					0	0	0		ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.2060852050781	3	353.204862	1056.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.276	1	31.276	30.776	31.776	0								0	0	0	0.30504	1	11675	11675		49.536	8.1094	1				47852	5761	31784	31913	48451	48451					0.0667253036326656
VTLDWAKPK	9	Unmodified	_VTLDWAKPK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.3052978515625	2	529.305667	1056.59678	0.28619	0.00015148	0.32511	0.00017208	0.6113	0.00032357	529.3056861427973	31.29	0.17976	31.29	31.202	31.381	0					9	4	3	0	0	0	0.25716	1	11775	11775		54.776	10.66	1	161100			47853	2879	31785	31914	48452	48452					0.07074619856962272
VTLFTVFAF	9	Unmodified	_VTLFTVFAF_					0	0	0		ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.8647155761719	3	348.863666	1043.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.407	1	18.407	17.907	18.907	0								0	0	0	0.34845	1	5504	5504		25.574	3.6142	1				47854	3065	31786	31915	48453	48453					0.049127165967547626
VTLGEPKLLK	10	Unmodified	_VTLGEPKLLK_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.569091796875	3	366.569142	1096.6856	-0.16158	-5.9231E-05	0.23034	8.4435E-05	0.068757	2.5204E-05	366.56925076945794	32.128	0.21886	32.128	32.017	32.236	0					7	4	2	0	0	0	0.58189	1	12097	12097		41.08	12.503	1	151940			47855	7596	31787	31916	48454	48454					0.14112035096650288
VTLGNSFLH	9	Unmodified	_VTLGNSFLH_					0	0	0		ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2641906738281	2	494.266542	986.51853	-2.5139	-0.0012425	-1.9066	-0.00094235	-4.4204	-0.0021849	494.2655602263597	23.721	0.1287	23.721	23.665	23.794	0					6	3	2	0	0	0	0.063823	1	7288	7288		90.37	10.431	1	137990			47856	2643	31788	31917	48455	48455					0.024731872717552505
VTLHDMILK	9	Unmodified	_VTLHDMILK_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.3087158203125	2	535.307352	1068.60015	2.2087	0.0011823	-2.2347	-0.0011962	-0.02603	-1.3934E-05	535.3065263572717	36.494	0.22787	36.494	36.419	36.647	0					13	6	3	0	0	0	0.3269	1	13781	13781		47.96	12.341	1	132210			47857	3720	31789	31918	48456	48456					0.06859546639338987
VTLHDMILK	9	Unmodified	_VTLHDMILK_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.3078002929688	2	535.307352	1068.60015	0.70672	0.00037831	0.53082	0.00028415	1.2375	0.00066247	535.3074033510767	36.436	0.26711	36.436	36.329	36.596	0					8	5	2	0	0	0	0.085655	1	14172	14172		82.75	31.415	1	163870			47858	3720	31789	31918	48457	48457					0.06859546639338987
VTLHREFPA	9	Unmodified	_VTLHREFPA_					0	0	0		ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.1977844238281	3	357.197819	1068.57163	0.48677	0.00017387	-0.57892	-0.00020679	-0.092144	-3.2914E-05	357.19767850610975	24.734	0.68034	24.734	24.562	25.242	0					44	16	5	0	0	0	0.28897	1	8334	8334		51.193	17.02	1	9012800			47859	2273	31790	31919	48458	48458					0.04008565054414248
VTLHTSFQK	9	Unmodified	_VTLHTSFQK_					0	0	0		ENST00000532746.5_2_16:2012101-2013785:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF	ENST00000532746.5_2_16:2012101-2013785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.7930297851562	2	530.792924	1059.57129	1.0929	0.00058012	-0.55863	-0.00029652	0.5343	0.0002836	530.7925980196624	25.229	0.30257	25.229	25.119	25.422	0					23	9	4	0	0	0	0.30951	1	7558	7558		49.442	0	1	742820			47860	10454	31791	31920	48459	48459					0.04389145334562272
VTLKLAGLR	9	Unmodified	_VTLKLAGLR_					0	0	0			REV__nc|ENSG00000170234|Q96N64-2|PWWP2A	REV__nc|ENSG00000170234|Q96N64-2|PWWP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.82415771484375	2	485.824027	969.633501	0.64896	0.00031528	-0.78713	-0.00038241	-0.13817	-6.7126E-05	485.823620515284	23.053	0.21846	23.053	22.944	23.162	0					11	4	3	0	0	0	0.13267	1	7905	7905		71.877	3.0906	1	1020500	+		47861	21114	31792	31921	48460	48460					0.14746916473563942
VTLLPFGRN	9	Unmodified	_VTLLPFGRN_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.3010559082031	2	508.798009	1015.58147	0.95175	0.00048425	1.3576	0.00069074	2.3093	0.001175	508.79846273242225	23.479	0.14696	23.479	23.406	23.553	0					8	5	2	0	0	0	0.32741	1	6801	6801		47.916	5.5195	1	67790	+		47862	16067	31793	31922	48461	48461					0.07429753059807354
VTLNIDGL	8	Unmodified	_VTLNIDGL_					0	0	0			REV__ENST00000565642.5_1_16:71777395-71799448:-|nuORF	REV__ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	422.7422180175781	2	422.742368	843.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.787	1	27.787	27.287	28.287	0								0	0	0	1.7419	1	9136	9136		60.972	7.6205	1		+		47863	20338	31794	31923	48462	48462					0.04218693631844417
VTLNTSQYL	9	Unmodified	_VTLNTSQYL_					0	0	0		HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant;nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	HELZ|p.L1089Ffs*20|1|0.05|ENSG00000198265|chr17:67128771-67128772|-/GTTAATG|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.77685546875	2	519.776939	1037.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.332	1	32.332	31.832	32.832	0								0	0	0	0.3063	1	11235	11235		33.922	1.1092	1				47864	7546	31795	31924	48463	48463					0.022057328607616
VTLPAPPPPPV	11	Unmodified	_VTLPAPPPPPV_					0	0	0		nc|ENSG00000114790|Q96DR7-3|ARHGEF26;ARHGEF26|p.T596Nfs*3|1|0.29|ENSG00000114790|chr3:154194653-154194654|-/A|frameshift_variant;nc|ENSG00000114790|Q96DR7-4|ARHGEF26;ENSG00000114790|ENST00000465093|ARHGEF26	nc|ENSG00000114790|Q96DR7-3|ARHGEF26	nc|ENSG00000114790|Q96DR7-3|ARHGEF26	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	362.216796875	3	362.21822	1083.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.47	1	21.47	20.97	21.97	0								0	0	0	0.45674	1	6230	6230		15.333	2.5214	1				47865	217	31796	31925	48464	48464					0.09436077033842594
VTLQILRK	8	Unmodified	_VTLQILRK_					0	0	0		ENST00000360128.10_1_8:33354209-33354789:+|nuORF	ENST00000360128.10_1_8:33354209-33354789:+|nuORF	ENST00000360128.10_1_8:33354209-33354789:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.8241271972656	2	485.824027	969.633501	0.67512	0.00032799	-1.0566	-0.00051334	-0.38152	-0.00018535	485.8235518203051	23.137	0.36779	23.137	23.049	23.417	0					13	8	3	0	0	0	0.35045	1	7611	7611		76.774	4.8967	1	793940			47866	8858	31797	31926	48465	48465					0.1474691647357531
VTLQPAGMKI	10	Unmodified	_VTLQPAGMKI_					0	0	0		ENST00000397977.7_1_8:19674673-19674787:+|nuORF	ENST00000397977.7_1_8:19674673-19674787:+|nuORF	ENST00000397977.7_1_8:19674673-19674787:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.2060241699219	3	353.207327	1056.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.087	1	31.087	30.587	31.587	0								0	0	0	0.4044	1	10664	10664		29.17	0	1				47867	9224	31798	31927	48466	48466					0.07411546639355038
VTLQQLHCLK	10	Unmodified	_VTLQQLHCLK_					0	0	0		ENST00000310613.7_1_4:70626187-70626241:-|nuORF	ENST00000310613.7_1_4:70626187-70626241:-|nuORF	ENST00000310613.7_1_4:70626187-70626241:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.8941345214844	3	394.893631	1181.65906	0.70067	0.00027669	0.16278	6.428E-05	0.86344	0.00034097	394.8937071074158	33.28	0.24679	33.28	33.159	33.405	0					10	6	2	0	0	0	0.50287	1	12283	12283		45.022	8.5755	1	90729			47868	8549	31799	31928	48467	48467					0.07550022933673972
VTLQQLHCLK	10	Unmodified	_VTLQQLHCLK_					0	0	0		ENST00000310613.7_1_4:70626187-70626241:-|nuORF	ENST00000310613.7_1_4:70626187-70626241:-|nuORF	ENST00000310613.7_1_4:70626187-70626241:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.89373779296875	3	394.893631	1181.65906	0.10906	4.3067E-05	0.12542	4.9529E-05	0.23448	9.2596E-05	394.8937671546843	33.238	0.31382	33.238	33.151	33.465	0					14	7	3	0	0	0	0.69544	1	12702	12702		22.58	2.5829	1	171420			47869	8549	31799	31928	48468	48468					0.07550022933673972
VTLQQLHCLK	10	Unmodified	_VTLQQLHCLK_					0	0	0		ENST00000310613.7_1_4:70626187-70626241:-|nuORF	ENST00000310613.7_1_4:70626187-70626241:-|nuORF	ENST00000310613.7_1_4:70626187-70626241:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.8372192382812	2	591.836808	1181.65906	-0.066403	-3.93E-05	0.14789	8.7529E-05	0.081491	4.823E-05	591.8367046179674	33.226	0.13102	33.226	33.165	33.296	0					6	3	2	0	0	0	0.27406	1	12706	12706		58.23	5.2932	1	59347			47870	8549	31799	31928	48469	48469					0.07550022933673972
VTLRCWTP	8	Unmodified	_VTLRCWTP_					0	0	0		ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1	ENSG00000248385|ENST00000432826|TARM1	ENSG00000248385|ENST00000432826|TARM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.258544921875	2	488.257662	974.500772	0.62063	0.00030303	1.1511	0.00056203	1.7717	0.00086506	488.25822327536446	18.502	0.11816	18.502	18.443	18.561	0					6	2	3	0	0	0	0.61938	1	5703	5703		45.952	0	1	737200			47871	7977	31800	31929	48470	48470					0.012501487452368565
VTLRGATPLY	10	Unmodified	_VTLRGATPLY_					0	0	0			REV__ENST00000595117.1_1_19:51125949-51129280:-|nuORF	REV__ENST00000595117.1_1_19:51125949-51129280:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.81884765625	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.485	1	45.485	44.985	45.985	0								0	0	0	0.40634	1	18217	18217		23.523	0	1		+		47872	17553	31801	31930	48471	48471					0.07702004885732094
VTLSVPNVSE	10	Unmodified	_VTLSVPNVSE_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1;nc|ENSG00000188394|Q9Y3P9-4|RABGAP1;ENST00000317419.7_1_9:125719338-125751780:+|nuORF	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7827758789062	2	522.782222	1043.54989	0.78985	0.00041292	-0.12049	-6.2988E-05	0.66937	0.00034993	522.7822712486327	31.971	0.765	31.971	31.708	32.473	0					56	32	3	0	0	0	0.64162	1	10426	10426		29.17	2.374	1	181230			47873	1051	31802	31931	48472	48472					0.029857155152058112
VTLSWKPVQK	10	Unmodified	_VTLSWKPVQK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5	nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-5|API5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.9044494628906	3	395.904524	1184.69174	0.40215	0.00015921	-0.6698	-0.00026518	-0.26765	-0.00010596	395.90423386446395	31.362	0.36343	31.362	31.207	31.571	0					20	7	4	0	0	0	0.45669	1	11703	11703		50.034	0.49747	1	1097500			47874	5868	31803	31932	48473	48473					0.10678553328170892
VTLTCQSPL	9	Unmodified	_VTLTCQSPL_					0	0	0		CON__Q2KJF1	CON__Q2KJF1	CON__Q2KJF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2544250488281	2	481.254785	960.495018	0.52887	0.00025452	-1.3343	-0.00064215	-0.80546	-0.00038763	481.2543826062241	32.646	0.45586	32.646	32.342	32.798	0					18	11	2	0	0	0	0.15163	1	11954	11954		67.494	11.06	1	105670		+	47875	656	31804	31933	48474	48474					0.013190054429401243
VTLTEMVLL	9	Unmodified	_VTLTEMVLL_					0	0	0			REV__ENST00000426414.6_1_4:85730999-85781744:-|nuORF	REV__ENST00000426414.6_1_4:85730999-85781744:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	340.20123291015625	3	340.19995	1017.57802	3.0207	0.0010276	1.2568	0.00042757	4.2775	0.0014552	340.200442443576	18.198	0.36269	18.198	18.092	18.454	0					19	7	4	0	0	0	0.5654	1	5389	5389		19.104	19.104	1	10943000	+		47876	15900	31805	31934	48475	48475					0.06993322170944793
VTLTTQHVK	9	Unmodified	_VTLTTQHVK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.8003540039062	2	513.800749	1025.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.848	1	19.848	19.348	20.348	0								0	0	0	0.23111	1	5447	5447		46.457	7.7032	1				47877	11514	31806	31935	48476	48476					0.07517431851601941
VTLTTQHVK	9	Unmodified	_VTLTTQHVK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.8009643554688	2	513.800749	1025.58694	-0.4751	-0.0002441	0.58885	0.00030255	0.11376	5.8449E-05	513.801093838433	20.054	0.16748	20.054	19.944	20.112	0					5	3	2	0	0	0	0.070005	1	6430	6430		88.177	35.24	1	448120			47878	11514	31806	31935	48477	48477					0.07517431851601941
VTLVFSEMGIS	11	Unmodified	_VTLVFSEMGIS_					0	0	0		ENST00000470258.5_1_13:39623408-39623585:+|nuORF	ENST00000470258.5_1_13:39623408-39623585:+|nuORF	ENST00000470258.5_1_13:39623408-39623585:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.2148742675781	3	394.874014	1181.60021	0.10913	4.3094E-05	0.97272	0.0003841	1.0819	0.00042719	394.87448800829367	23.771	1.0662	23.771	23.663	24.729	0					36	21	4	0	0	0	0.67983	1	8606	8606		29.551	6.9711	1	1542700			47879	9836	31807	31936	48478	48478					0.016675018486921545
VTLVHEAR	8	Unmodified	_VTLVHEAR_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.76678466796875	2	462.766709	923.518865	0.11273	5.2169E-05	0.41023	0.00018984	0.52296	0.00024201	462.7668915311377	22.217	0.16301	22.217	22.127	22.29	0					8	5	2	0	0	0	0.46905	1	6241	6241		63.306	9.9548	1	191040	+		47880	16110	31808	31937	48479	48479					0.054046069916125816
VTLVHEAR	8	Unmodified	_VTLVHEAR_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.7664794921875	2	462.766709	923.518865	0.6763	0.00031297	-1.0633	-0.00049205	-0.38698	-0.00017908	462.7661608756501	22.553	0.26758	22.553	22.43	22.698	0					13	6	3	0	0	0	0.34985	1	7338	7338		76.847	2.5916	1	1277600	+		47881	16110	31808	31937	48480	48480					0.054046069916125816
VTLVKGSLP	9	Unmodified	_VTLVKGSLP_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2894287109375	2	457.289485	912.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.728	1	36.728	36.228	37.228	0								0	0	0	0.38123	1	12438	12438		16.473	0.83134	1		+		47882	17203	31809	31938	48481	48481					0.10463832454001931
VTMGFTGFGK	10	Unmodified	_VTMGFTGFGK_					0	0	0		ENSG00000082068|ENST00000265107|WDR70;WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;WDR70|p.E64Rfs*4|1|0.3|ENSG00000082068|chr5:37392009-37392009|A/-|frameshift_variant;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7626953125	2	522.762778	1043.511	1.7977	0.00093978	-1.5083	-0.00078849	0.28941	0.00015129	522.7618257173333	40.713	0.19249	40.713	40.617	40.809	0					14	8	2	0	0	0	0.28675	1	16048	16048		68.846	2.4169	1	201130			47883	1669	31810	31939	48482	48482					-0.009012883201648947
VTMGLTANL	9	Unmodified	_VTMGLTANL_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12;REV__nc|ENSG00000205277|Q9UKN1|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	460.25439453125	2	460.249503	918.484453	0.86955	0.00040021	-1.6676	-0.00076752	-0.79806	-0.00036731	460.248831847444	38.485	0.83031	38.485	38.202	39.032	0					43	17	5	0	0	0	0.15163	1	15312	15312		67.494	10.773	1	8237600	+		47884	17519;21194	31811	31940	48483	48483					0.021950227884985907
VTMKEILLK	9	Unmodified	_VTMKEILLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.8336791992188	2	537.833203	1073.65185	1.8986	0.0010211	-0.52712	-0.0002835	1.3715	0.00073764	537.8330282639458	35.157	0.17415	35.157	35.044	35.218	0					7	4	2	0	0	0	0.095583	1	13159	13159		80.455	18.347	1	54625			47885	3118	31812	31941	48484	48484					0.11797290333242927
VTMKEILLK	9	Unmodified	_VTMKEILLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.8912353515625	3	358.891227	1073.65185	0.72432	0.00025995	-0.72177	-0.00025904	0.002546	9.1375E-07	358.89095770672463	35.156	0.24593	35.156	35.033	35.279	0					12	6	3	0	0	0	0.27249	1	13153	13153		59.931	0	1	193490			47886	3118	31812	31941	48485	48485					0.11797290333242927
VTMKEILLK	9	Unmodified	_VTMKEILLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.8338012695312	2	537.833203	1073.65185	1.3419	0.00072173	0.070521	3.7929E-05	1.4124	0.00075966	537.833279868822	35.155	0.33125	35.155	35.038	35.37	0					13	9	3	0	0	0	0.0097668	1	13594	13594		141.52	22.777	1	189250			47887	3118	31812	31941	48486	48486					0.11797290333242927
VTMKEILLK	9	Unmodified	_VTMKEILLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.833740234375	2	537.833203	1073.65185	0.69502	0.0003738	0.52535	0.00028255	1.2204	0.00065635	537.8335201856371	35.066	0.21456	35.066	34.981	35.196	0					12	4	3	0	0	0	0.067603	1	13502	13502		89.029	25.495	1	452370			47888	3118	31812	31941	48487	48487					0.11797290333242927
VTMKQICKK	9	Unmodified	_VTMKQICKK_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;DEK|p.E372Sfs*2|1|0.2|ENSG00000124795|chr6:18226177-18226177|T/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.2085266113281	3	360.208562	1077.60386	0.86122	0.00031022	-1.1083	-0.0003992	-0.24704	-8.8985E-05	360.208166087438	19.285	0.28721	19.285	19.182	19.469	0					9	6	2	0	0	0	0.19952	1	5782	5782		61.691	18.827	1	165700			47889	767	31813	31942	48488	48488					0.06815893141538254
VTMKQICKK	9	Unmodified	_VTMKQICKK_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;DEK|p.E372Sfs*2|1|0.2|ENSG00000124795|chr6:18226177-18226177|T/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.8102416992188	2	539.809205	1077.60386	0.3051	0.0001647	-0.099491	-5.3706E-05	0.20561	0.00011099	539.8097432992454	19.206	0.26472	19.206	19.099	19.363	0					8	5	3	0	0	0	0.12278	1	6021	6021		67.494	26.716	1	225580			47890	767	31813	31942	48489	48489					0.06815893141538254
VTMKQICKK	9	Carbamidomethyl (C)	_VTMKQIC(Carbamidomethyl (C))KK_	VTMKQIC(1)KK		VTMKQIC(60)KK		0	1	0		nc|ENSG00000124795|P35659-2|DEK;DEK|p.E372Sfs*2|1|0.2|ENSG00000124795|chr6:18226177-18226177|T/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.21563720703125	3	379.215717	1134.62532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.588	1	17.588	17.088	18.088	0								0	0	0	0.14881	1	5250	5250		60.118	29.801	1				47891	767	31813	31943	48490	48490	25				0.06339278170253237
VTMKQICKKVY	11	Unmodified	_VTMKQICKKVY_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;DEK|p.E372Sfs*2|1|0.2|ENSG00000124795|chr6:18226177-18226177|T/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.5851745605469	3	447.58581	1339.7356	0.84632	0.0003788	-1.6221	-0.00072603	-0.77579	-0.00034723	447.5849644131841	26.142	0.57012	26.142	25.932	26.502	0					20	10	3	0	0	0	0.72624	1	9236	9236		25.126	2.5644	1	939700			47892	767	31814	31944	48491	48491					0.07932078438648205
VTMPATETKK	10	Unmodified	_VTMPATETKK_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.3004150390625	2	553.299724	1104.5849	0.03123	1.7279E-05	0.97172	0.00053765	1.003	0.00055493	553.3002130293434	19.305	0.16601	19.305	19.197	19.363	0					8	3	3	0	0	0	0.22691	1	6067	6067		76.17	6.5421	1	312000			47893	2166	31815	31945	48492	48492					0.0367863505148307
VTMTGAAAII	10	Unmodified	_VTMTGAAAII_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2645568847656	2	474.265153	946.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.205	1	30.205	29.705	30.705	0								0	0	0	0.37816	1	10868	10868		37.159	0	1		+		47894	15260	31816	31946	48493	48493					0.04035595822574578
VTNALAFAL	9	Unmodified	_VTNALAFAL_					0	0	0			REV__SIGMAR1|p.D188N|1|0.34|ENSG00000147955|chr9:34635742-34635742|C/T|missense_variant	REV__SIGMAR1|p.D188N|1|0.34|ENSG00000147955|chr9:34635742-34635742|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.2679138183594	2	460.26601	918.517468	-0.15258	-7.0226E-05	4.3354	0.0019954	4.1828	0.0019252	460.2676944605186	36.398	0.078377	36.398	36.36	36.439	0					6	2	3	0	0	0	0.35045	1	14184	14184		45.952	8.7928	1	50605	+		47895	21518	31817	31947	48494	48494					0.054949729028408
VTNDFVMLK	9	Unmodified	_VTNDFVMLK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7850952148438	2	533.78371	1065.55287	1.1198	0.00059772	0.49169	0.00026246	1.6115	0.00086017	533.7841117097192	39.104	0.21369	39.104	39.024	39.237	0					11	7	2	0	0	0	0.019258	1	15358	15358		123.21	51.331	1	98447			47896	2002	31818	31948	48495	48495					0.022712673683372486
VTNDFVMLK	9	Unmodified	_VTNDFVMLK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7844848632812	2	533.78371	1065.55287	2.0449	0.0010915	-1.1137	-0.00059449	0.93116	0.00049704	533.7831061629805	38.874	0.1328	38.874	38.806	38.938	0					11	7	2	0	0	0	0.14578	1	13881	13881		68.846	19.405	1	40144			47897	2002	31818	31948	48496	48496					0.022712673683372486
VTNDFVMLK	9	Unmodified	_VTNDFVMLK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.783935546875	2	533.78371	1065.55287	0.71314	0.00038066	0.61621	0.00032892	1.3294	0.00070959	533.7839950853014	39.041	0.38024	39.041	38.937	39.317	0					13	8	3	0	0	0	0.032383	1	15383	15383		106.68	34.806	1	678850			47898	2002	31818	31948	48497	48497					0.022712673683372486
VTNDFVMLK	9	Unmodified	_VTNDFVMLK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7838745117188	2	533.78371	1065.55287	1.8078	0.00096496	-2.0936	-0.0011175	-0.28583	-0.00015257	533.7828727570109	39.024	0.28866	39.024	38.967	39.256	0					11	6	3	0	0	0	0.061298	1	15399	15399		91.265	27.058	1	377070			47899	2002	31818	31948	48498	48498					0.022712673683372486
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2888793945312	2	516.290214	1030.56587	1.3327	0.00068806	-1.4404	-0.00074366	-0.1077	-5.5603E-05	516.289201905485	26.006	0.31608	26.006	25.948	26.264	0					22	11	3	0	0	0	0.022935	1	7848	7848		123.11	5.4059	1	1186100			47900	5876	31819	31949	48499	48499					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.2901611328125	2	516.290214	1030.56587	1.2446	0.00064258	-2.4841	-0.0012825	-1.2395	-0.00063995	516.2886111207089	26.289	0.30245	26.289	26.204	26.507	0					27	7	5	0	0	0	0.00034343	1	9058	9058		188.91	5.1904	1	9346300			47901	5876	31819	31949	48500	48500					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2904663085938	2	516.290214	1030.56587	-0.038679	-1.997E-05	-0.73891	-0.00038149	-0.77759	-0.00040146	516.2895984267162	26.028	0.27777	26.028	25.968	26.245	0					23	9	4	0	0	0	0.026439	1	8138	8138		120.63	5.3985	1	1784700			47902	5876	31819	31949	48501	48501					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2896118164062	2	516.290214	1030.56587	1.4651	0.00075642	-1.845	-0.00095258	-0.37994	-0.00019616	516.2890320813489	26.268	0.71058	26.268	26.217	26.927	0					30	14	5	0	0	0	0.019305	1	9390	9390		125.68	5.4095	1	10011000			47903	5876	31819	31949	48502	48502					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.291259765625	2	516.290214	1030.56587	1.1501	0.0005938	-0.1616	-8.3433E-05	0.98852	0.00051036	516.2900037021262	26.101	0.2663	26.101	25.967	26.233	0					15	6	3	0	0	0	3.4461E-06	1	8345	8345		201.61	5.0941	1	786440			47904	5876	31819	31949	48503	48503					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.29052734375	2	516.290214	1030.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.103	1	26.103	25.603	26.603	0								0	0	0	3.5688E-06	1	8356	8356		164.66	5.3275	1				47905	5876	31819	31949	48504	48504					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.2897338867188	2	516.290214	1030.56587	-1.5079	-0.00077854	1.0101	0.0005215	-0.49785	-0.00025703	516.2905452299086	26.078	0.30551	26.078	25.984	26.289	0					18	7	4	0	0	0	0.078327	1	8348	8348		99.788	5.3787	1	947000			47906	5876	31819	31949	48505	48505					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2903442382812	2	516.290214	1030.56587	0.18725	9.6675E-05	0.30341	0.00015665	0.49066	0.00025332	516.2902651213084	26.21	0.31614	26.21	26.101	26.417	0					17	6	3	0	0	0	0.0015876	1	9240	9240		176.6	5.2679	1	4790200			47907	5876	31819	31949	48506	48506					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENST00000551620.5_1_12:69979244-69983508:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.2901000976562	2	516.290214	1030.56587	1.5266	0.00078818	-3.1086	-0.0016049	-1.582	-0.00081677	516.2883274608305	26.242	0.76845	26.242	26.134	26.902	0					31	15	5	0	0	0	3.4461E-06	1	9256	9256		201.61	17.89	1	10092000			47908	5876	31819	31949	48507	48507					0.051814217520814054
VTNDKLTSK	9	Unmodified	_VTNDKLTSK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-5|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2828063964844	2	503.282389	1004.55022	0.56931	0.00028652	-0.24868	-0.00012516	0.32063	0.00016137	503.28229883360535	14.832	0.092321	14.832	14.776	14.869	0					7	4	2	0	0	0	0.2546	1	3115	3115		55.084	14.306	1	55996			47909	4030	31820	31950	48508	48508					0.048131352350424095
VTNDKLTSK	9	Unmodified	_VTNDKLTSK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-5|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.28228759765625	2	503.282389	1004.55022	0.73879	0.00037182	-0.91557	-0.00046079	-0.17679	-8.8975E-05	503.2818310310801	15.076	0.22857	15.076	15.023	15.252	0					6	5	2	0	0	0	0.022589	1	3830	3830		117.71	42.662	1	500430			47910	4030	31820	31950	48509	48509					0.048131352350424095
VTNDKLTSK	9	Unmodified	_VTNDKLTSK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-5|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.2823181152344	2	503.282389	1004.55022	-0.8788	-0.00044229	1.6781	0.00084454	0.79926	0.00040226	503.2828779387805	14.847	0.09353	14.847	14.794	14.888	0					5	3	2	0	0	0	0.095583	1	3284	3284		80.455	14.025	1	58083			47911	4030	31820	31950	48510	48510					0.048131352350424095
VTNDKLTSK	9	Unmodified	_VTNDKLTSK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-5|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2821960449219	2	503.282389	1004.55022	1.0018	0.00050418	-1.5612	-0.00078573	-0.55943	-0.00028155	503.2816302396337	15.087	0.1701	15.087	14.977	15.147	0					5	3	2	0	0	0	0.024312	1	4065	4065		114.86	47.365	1	985820			47912	4030	31820	31950	48511	48511					0.048131352350424095
VTNDKLTSK	9	Unmodified	_VTNDKLTSK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-5|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.2820739746094	2	503.282389	1004.55022	0.12936	6.5106E-05	0.13516	6.8022E-05	0.26452	0.00013313	503.2823452022682	14.89	0.069958	14.89	14.829	14.899	0					6	3	2	0	0	0	0.078509	1	3238	3238		85.161	20.954	1	46125			47913	4030	31820	31950	48512	48512					0.048131352350424095
VTNDKLTSK	9	Unmodified	_VTNDKLTSK_					0	0	0		nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-5|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	nc|ENSG00000135899|Q9HB58-3|SP110	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.28228759765625	2	503.282389	1004.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.076	1	15.076	14.576	15.576	0								0	0	0	0.02816	1	3895	3895		96.665	41.943	1				47914	4030	31820	31950	48513	48513					0.048131352350424095
VTNGLFGVV	9	Unmodified	_VTNGLFGVV_					0	0	0			REV__ENSG00000135973|ENST00000258456|GPR45	REV__ENSG00000135973|ENST00000258456|GPR45	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2579040527344	2	453.258185	904.501818	0.0043243	1.96E-06	-0.96771	-0.00043862	-0.96339	-0.00043666	453.25802172197547	33.296	0.36547	33.296	33.18	33.546	0					20	10	3	0	0	0	0.25109	1	11680	11680		55.504	9.5523	1	217750	+		47915	14837	31821	31951	48514	48514					0.04574686385808491
VTNGVTGVVF	10	Unmodified	_VTNGVTGVVF_					0	0	0			REV__ENSG00000101188|ENST00000370501|NTSR1	REV__ENSG00000101188|ENST00000370501|NTSR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7735595703125	2	496.7742	991.533846	0.11709	5.8167E-05	-0.30987	-0.00015393	-0.19278	-9.5766E-05	496.7740843104382	25.189	0.25956	25.189	25.052	25.312	0					13	7	2	0	0	0	0.56931	1	7516	7516		37.812	7.4938	1	123800	+		47916	13591	31822	31952	48515	48515					0.0377405406896969
VTNIGNQQI	9	Unmodified	_VTNIGNQQI_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275976-202276645:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.76666259765625	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.561	1	23.561	23.061	24.061	0								0	0	0	0.29356	1	7096	7096		36.447	0	1				47917	4047	31823	31953	48516	48516					0.025919819208070294
VTNIVTAKY	9	Unmodified	_VTNIVTAKY_					0	0	0			REV__L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|37|3|sense	REV__L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|37|3|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7909240722656	2	504.78985	1007.56515	0.10714	5.4082E-05	0.93235	0.00047064	1.0395	0.00052472	504.79046856863874	35.51	0.15799	35.51	35.433	35.591	0					6	4	2	0	0	0	0.46194	1	13777	13777		36.447	0.82846	1	64791	+		47918	20805	31824	31954	48517	48517					0.06166627103027622
VTNKTLLP	8	Unmodified	_VTNKTLLP_					0	0	0			REV__tr|U7T3R0|U7T3R0_FUSNUFlavoproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00501PE=4SV=1	REV__tr|U7T3R0|U7T3R0_FUSNUFlavoproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00501PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	443.27191162109375	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.634	1	50.634	50.134	51.134	0								0	0	0	1.7419	1	19937	19937		19.36	1.0356	1		+		47919	22145	31825	31955	48518	48518					0.08623259419891838
VTNKVIVS	8	Unmodified	_VTNKVIVS_					0	0	0			REV__ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	REV__ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	430.2658386230469	2	430.26601	858.517468	0.96444	0.00041497	-1.2897	-0.00055491	-0.32526	-0.00013995	430.2653601619698	29.86	0.2657	29.86	29.65	29.916	0					7	5	2	0	0	0	0.46905	1	11114	11114		63.306	2.3343	1	567060	+		47920	15184	31826	31956	48519	48519					0.08254972902841473
VTNMIMKR	8	Unmodified	_VTNMIMKR_					0	0	0			REV__ENST00000471759.5_1_1:76253197-76254868:+|nuORF	REV__ENST00000471759.5_1_1:76253197-76254868:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.77392578125	2	496.772622	991.530692	3.4039	0.001691	1.522	0.00075608	4.9259	0.002447	496.77384379898325	25.244	0.42232	25.244	24.913	25.335	0					21	13	2	0	0	0	0.63077	1	7791	7791		44.117	4.864	1	119850	+		47921	19484	31827	31957	48520	48520					0.034587644189400635
VTNNSGYITN	10	Unmodified	_VTNNSGYITN_					0	0	0		NUFIP2|p.K314Sfs*39|1|0.16|ENSG00000108256|chr17:29287053-29287053|T/-|frameshift_variant;NUFIP2|p.Y664Lfs*18|1|0.04|ENSG00000108256|chr17:29285997-29286003|GTGTGAT/-|frameshift_variant;ENSG00000108256|ENST00000225388|NUFIP2	NUFIP2|p.K314Sfs*39|1|0.16|ENSG00000108256|chr17:29287053-29287053|T/-|frameshift_variant	NUFIP2|p.K314Sfs*39|1|0.16|ENSG00000108256|chr17:29287053-29287053|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.759765625	2	541.759278	1081.504	1.7484	0.00094724	-0.39455	-0.00021375	1.3539	0.00073349	541.7589872827982	24.028	0.22131	24.028	23.954	24.175	0					10	6	2	0	0	0	0.4287	1	7025	7025		53.089	1.7535	1	260000			47922	2521	31828	31958	48521	48521					-0.033489296670495605
VTNNVIRLK	9	Unmodified	_VTNNVIRLK_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.888916015625	3	352.888986	1055.64513	0.32044	0.00011308	-0.36245	-0.0001279	-0.042012	-1.4826E-05	352.8889226874898	24.818	0.26223	24.818	24.712	24.974	0					10	5	3	0	0	0	0.25761	1	8720	8720		54.722	11.858	1	319260			47923	1899	31829	31959	48522	48522					0.11953113496861079
VTNNVIRLK	9	Unmodified	_VTNNVIRLK_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.829833984375	2	528.82984	1055.64513	0.28582	0.00015115	0.36068	0.00019074	0.6465	0.00034189	528.8298497924178	24.834	0.16126	24.834	24.729	24.89	0					8	3	3	0	0	0	0.052435	1	8727	8727		98.582	41.861	1	432430			47924	1899	31829	31959	48523	48523					0.11953113496861079
VTNNVIRLK	9	Unmodified	_VTNNVIRLK_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.8889465332031	3	352.888986	1055.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.798	1	24.798	24.298	25.298	0								0	0	0	0.3063	1	8600	8600		33.922	1.1092	1				47925	1899	31829	31959	48524	48524					0.11953113496861079
VTNPDIAAKKK	11	Unmodified	_VTNPDIAAKKK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.5712585449219	3	395.571434	1183.69247	0.5629	0.00022267	-0.89361	-0.00035349	-0.33071	-0.00013082	395.5711567320697	16.105	0.16674	16.105	16.013	16.179	0					7	3	3	0	0	0	0.65797	1	4560	4560		31.634	4.587	1	170540			47926	3193	31830	31960	48525	48525					0.10797347977222671
VTNPEKRIP	9	Unmodified	_VTNPEKRIP_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.3071899414062	2	527.306198	1052.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.467	1	20.467	19.967	20.967	0								0	0	0	0.2591	1	5760	5760		42.396	1.618	1				47927	7781	31831	31961	48526	48526					0.07364834225904815
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	342.8856201171875	3	342.885464	1025.63456	-0.74805	-0.0002565	0.66348	0.0002275	-0.084573	-2.8999E-05	342.8856942631292	14.644	0.19164	14.644	14.486	14.677	0					14	8	2	0	0	0	0.4966	1	3184	3184		32.812	6.1195	1	121530			47928	1530	31832	31962	48527	48527					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.824462890625	2	513.824558	1025.63456	1.3318	0.00068432	-1.1122	-0.00057148	0.21961	0.00011284	513.8240709946165	14.895	0.51733	14.895	14.63	15.147	0					30	10	4	0	0	0	0.015992	1	3946	3946		90.601	5.6853	1	1782000			47929	1530	31832	31962	48528	48528					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	342.8865661621094	3	342.885464	1025.63456	1.4714	0.00050452	-1.3725	-0.0004706	0.09893	3.3921E-05	342.8850429353216	14.894	0.46304	14.894	14.582	15.045	0					26	9	4	0	0	0	0.28897	1	3997	3997		51.193	6.8155	1	1798500			47930	1530	31832	31962	48529	48529					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.8257446289062	2	513.824558	1025.63456	0.575	0.00029545	1.2958	0.00066584	1.8708	0.00096129	513.8254193548183	14.69	0.22382	14.69	14.508	14.731	0					11	8	2	0	0	0	0.020674	1	3152	3152		82.241	28.889	1	142990			47931	1530	31832	31962	48530	48530					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.8251342773438	2	513.824558	1025.63456	-1.6358	-0.00084049	2.2818	0.0011725	0.64607	0.00033197	513.8258221333175	14.672	0.15511	14.672	14.565	14.72	0					10	5	2	0	0	0	0.40353	1	3136	3136		26.693	3.6504	1	108650			47932	1530	31832	31962	48531	48531					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.8245849609375	2	513.824558	1025.63456	1.4628	0.00075164	-1.0225	-0.00052539	0.44031	0.00022624	513.8240863879164	14.857	0.42036	14.857	14.592	15.012	0					24	8	4	0	0	0	0.04067	1	3755	3755		52.937	0	1	1572000			47933	1530	31832	31962	48532	48532					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	342.8853454589844	3	342.885464	1025.63456	3.0246	0.0010371	-2.7295	-0.00093589	0.29517	0.00010121	342.88458877160105	14.866	0.42019	14.866	14.575	14.995	0					18	8	3	0	0	0	0.38666	1	3768	3768		42.864	0	1	1078800			47934	1530	31832	31962	48533	48533					0.12277130842448969
VTNSFDLPMR	10	Oxidation (M)	_VTNSFDLPM(Oxidation (M))R_		VTNSFDLPM(1)R		VTNSFDLPM(85)R	0	0	1			REV__NLRC3|p.T226M|1|0.42|ENSG00000167984|chr16:3564260-3564260|G/A|missense_variant	REV__NLRC3|p.T226M|1|0.42|ENSG00000167984|chr16:3564260-3564260|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	598.2919921875	2	598.29243	1194.57031	-0.01409	-8.43E-06	-0.63842	-0.00038196	-0.65251	-0.00039039	598.29211370772	13.003	0.26153	13.003	12.889	13.151	0					19	7	3	0	0	0	0.15878	1	2864	2864		85.161	12.282	1	8518400	+		47935	21292	31833	31963	48534	48534		767			-0.01919437096648835
VTNTIVALMQ	10	Unmodified	_VTNTIVALMQ_					0	0	0		ENSG00000131183|ENST00000324417|SLC34A1;SLC34A1|p.A207V|1|0.32|ENSG00000131183|chr5:177387849-177387849|C/T|missense_variant;nc|ENSG00000131183|Q06495-2|SLC34A1;SLC34A1|p.F397Sfs*16|1|0.31|ENSG00000131183|chr5:177396742-177396742|C/-|frameshift_variant	ENSG00000131183|ENST00000324417|SLC34A1	ENSG00000131183|ENST00000324417|SLC34A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.3005981445312	2	545.302267	1088.58998	1.7567	0.00095796	-2.5442	-0.0013873	-0.78741	-0.00042938	545.3009257937639	23.445	0.21803	23.445	23.335	23.553	0					13	7	3	0	0	0	0.34667	1	6797	6797		62.107	1.1355	1	216240			47936	3706	31834	31964	48535	48535					0.049229389141146385
VTNTKAVSK	9	Unmodified	_VTNTKAVSK_					0	0	0			REV__ENST00000568515.1_1_15:66007788-66048788:-|nuORF	REV__ENST00000568515.1_1_15:66007788-66048788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.27947998046875	2	474.279649	946.544745	-0.01536	-7.285E-06	0.15549	7.3748E-05	0.14013	6.6463E-05	474.27976426315854	14.503	0.080742	14.503	14.459	14.539	0					5	3	2	0	0	0	0.11898	1	2990	2990		75.043	8.0814	1	83987	+		47937	12694	31835	31965	48536	48536					0.06933456443232444
VTNVTSLLK	9	Unmodified	_VTNVTSLLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7979736328125	2	487.797675	973.580796	-0.066456	-3.2417E-05	0.8115	0.00039585	0.74505	0.00036343	487.79802787669837	36.46	0.14642	36.46	36.406	36.552	0					9	7	2	0	0	0	0.14578	1	11958	11958		68.846	19.31	1	101310			47938	4144;6333	31836	31966	48537	48537					0.09294913620090028
VTNVTSLLK	9	Unmodified	_VTNVTSLLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.7973327636719	2	487.797675	973.580796	0.73587	0.00035896	-0.97171	-0.000474	-0.23584	-0.00011504	487.79726395584413	36.754	0.34325	36.754	36.532	36.875	0					17	9	3	0	0	0	0.040209	1	13878	13878		99.013	16.262	1	342430			47939	4144;6333	31836	31966	48538	48538					0.09294913620090028
VTNVTSLLK	9	Unmodified	_VTNVTSLLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.797119140625	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.552	1	36.552	36.052	37.052	0								0	0	0	0.27521	1	12378	12378		40.058	0	1				47940	4144;6333	31836	31966	48539	48539					0.09294913620090028
VTNVTSLLK	9	Unmodified	_VTNVTSLLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.79736328125	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.704	1	36.704	36.204	37.204	0								0	0	0	0.11963	1	14314	14314		66.962	14.663	1				47941	4144;6333	31836	31966	48540	48540					0.09294913620090028
VTNVTSLLK	9	Unmodified	_VTNVTSLLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7981262207031	2	487.797675	973.580796	0.46576	0.0002272	0.0336	1.639E-05	0.49936	0.00024359	487.7978447840366	36.514	0.12957	36.514	36.446	36.576	0					10	6	2	0	0	0	0.47473	1	13067	13067		35.152	3.6222	1	47342			47942	4144;6333	31836	31966	48541	48541					0.09294913620090028
VTNVTSLLK	9	Unmodified	_VTNVTSLLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.7981872558594	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.528	1	36.528	36.028	37.028	0								0	0	0	0.23489	1	13077	13077		45.908	5.13	1				47943	4144;6333	31836	31966	48542	48542					0.09294913620090028
VTNVTSLLK	9	Unmodified	_VTNVTSLLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.79736328125	2	487.797675	973.580796	-0.52939	-0.00025824	-0.073192	-3.5703E-05	-0.60258	-0.00029394	487.79771464425687	36.704	0.26596	36.704	36.529	36.795	0					11	5	3	0	0	0	0.032181	1	14266	14266		106.88	36.064	1	324610			47944	4144;6333	31836	31966	48543	48543					0.09294913620090028
VTNVVPLRSLS	11	Unmodified	_VTNVVPLRSLS_					0	0	0		CDH1|p.F462Lfs*19|1|0.16|ENSG00000039068|chr16:68815577-68815577|T/-|frameshift_variant	CDH1|p.F462Lfs*19|1|0.16|ENSG00000039068|chr16:68815577-68815577|T/-|frameshift_variant	CDH1|p.F462Lfs*19|1|0.16|ENSG00000039068|chr16:68815577-68815577|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.2381591796875	2	592.853512	1183.69247	0.28197	0.00016717	-0.13322	-7.8982E-05	0.14875	8.8186E-05	592.8538244945515	16.167	0.1446	16.167	16.049	16.194	0					5	3	2	0	0	0	0.54277	1	4327	4327		25.126	12.314	1	92576			47945	443	31837	31967	48544	48544					0.10797347977222671
VTNWDDMEK	9	Oxidation (M)	_VTNWDDM(Oxidation (M))EK_		VTNWDDM(1)EK		VTNWDDM(53)EK	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	577.2461547851562	2	577.245146	1152.47574	0.87427	0.00050467	-0.15076	-8.7027E-05	0.72351	0.00041764	577.2454149409089	24.061	0.23661	24.061	23.978	24.215	0					14	7	3	0	0	0	0.27123	1	7057	7057		53.089	10.225	1	132410			47946	1545;6995;9697	31838	31968	48545	48545		73			-0.09439995638649634
VTNWDDMEK	9	Oxidation (M)	_VTNWDDM(Oxidation (M))EK_		VTNWDDM(1)EK		VTNWDDM(63)EK	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.2454223632812	2	577.245146	1152.47574	-0.0731	-4.2197E-05	0.38971	0.00022496	0.31661	0.00018276	577.2454927525031	24.348	0.53304	24.348	24.253	24.786	0					21	12	4	0	0	0	0.18505	1	8223	8223		63.426	24.62	1	793830			47947	1545;6995;9697	31838	31968	48546	48546		73			-0.09439995638649634
VTNWDDMEK	9	Oxidation (M)	_VTNWDDM(Oxidation (M))EK_		VTNWDDM(1)EK		VTNWDDM(78)EK	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.2459106445312	2	577.245146	1152.47574	-0.38364	-0.00022146	0.7634	0.00044067	0.37975	0.00021921	577.2456587185483	24.335	0.36327	24.335	24.23	24.593	0					17	7	4	0	0	0	0.10821	1	8495	8495		77.533	26.341	1	562020			47948	1545;6995;9697	31838	31968	48547	48547		73			-0.09439995638649634
VTNWDDMEK	9	Unmodified	_VTNWDDMEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.7501831054688	2	569.247689	1136.48082	1.142	0.00065007	-0.76681	-0.0004365	0.37517	0.00021357	569.2473066144665	31.513	0.42697	31.513	31.391	31.818	0					48	19	4	0	0	0	0.10821	1	10111	10111		77.533	33.156	1	894880			47949	1545;6995;9697	31838	31969	48548	48548					-0.08195691776040803
VTNWDDMEK	9	Unmodified	_VTNWDDMEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.2484130859375	2	569.247689	1136.48082	0.084503	4.8103E-05	0.83189	0.00047355	0.9164	0.00052166	569.2480239243588	31.732	0.86198	31.732	31.562	32.424	0					69	21	6	0	0	0	0.0066803	1	11567	11567		150.81	94.376	1	5074000			47950	1545;6995;9697	31838	31969	48549	48549					-0.08195691776040803
VTNWDDMEK	9	Unmodified	_VTNWDDMEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.2485961914062	2	569.247689	1136.48082	0.10653	6.0645E-05	0.30411	0.00017312	0.41065	0.00023376	569.2479306124823	31.556	0.34282	31.556	31.454	31.796	0					30	13	3	0	0	0	0.36135	1	10449	10449		45.022	14.704	1	551840			47951	1545;6995;9697	31838	31969	48550	48550					-0.08195691776040803
VTNWDDMEK	9	Unmodified	_VTNWDDMEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.2477416992188	2	569.247689	1136.48082	-0.27315	-0.00015549	0.48804	0.00027782	0.21489	0.00012233	569.2480466347224	31.567	0.26253	31.567	31.469	31.732	0					27	10	4	0	0	0	0.070127	1	10455	10455		88.134	51.687	1	440450			47952	1545;6995;9697	31838	31969	48551	48551					-0.08195691776040803
VTNWDDMEK	9	Unmodified	_VTNWDDMEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2478637695312	2	569.247689	1136.48082	1.9748	0.0011241	-1.8565	-0.0010568	0.11825	6.7315E-05	569.2467567261248	31.808	0.58915	31.808	31.653	32.242	0					48	12	5	0	0	0	0.0019365	1	12015	12015		174.86	99.822	1	3052400			47953	1545;6995;9697	31838	31969	48552	48552					-0.08195691776040803
VTNWDDMEK	9	Unmodified	_VTNWDDMEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ACTB|p.I85T|1|0.1|ENSG00000075624|chr7:5529270-5529270|A/G|missense_variant;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2482299804688	2	569.247689	1136.48082	0.1755	9.9903E-05	0.52413	0.00029836	0.69963	0.00039826	569.247863179536	31.788	0.58534	31.788	31.589	32.174	0					34	12	4	0	0	0	0.01077	1	12008	12008		139.38	73.917	1	2389900			47954	1545;6995;9697	31838	31969	48553	48553					-0.08195691776040803
VTPAAFWVT	9	Unmodified	_VTPAAFWVT_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2684326171875	2	496.26601	990.517468	2.8654	0.001422	2.3895	0.0011858	5.255	0.0026079	496.26692658150495	35.712	0.214	35.712	35.603	35.817	0					7	4	2	0	0	0	0.047412	1	13822	13822		96.19	0	1	807740			47955	7732	31839	31970	48554	48554					0.021829729028581824
VTPAGLRLTP	10	Unmodified	_VTPAGLRLTP_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	342.209716796875	3	342.209836	1023.60768	-1.9457	-0.00066582	1.2821	0.00043876	-0.66352	-0.00022706	342.2102600097074	20.048	0.18043	20.048	19.949	20.129	0					7	4	2	0	0	0	0.70877	1	5572	5572		14.694	3.5969	1	81965			47956	6231	31840	31971	48555	48555					0.09682022231265819
VTPEVKKT	8	Unmodified	_VTPEVKKT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.2703857421875	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.512	1	27.512	27.012	28.012	0								0	0	0	1.7419	1	8772	8772		52.937	3.4952	1				47957	5134;11594	31841	31972	48556	48556					0.07378955557271638
VTPIGAFVKGT	11	Unmodified	_VTPIGAFVKGT_					0	0	0			REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.3165893554688	2	545.318774	1088.623	-0.90449	-0.00049324	-1.8508	-0.0010093	-2.7553	-0.0015025	545.317624239011	49.916	0.58482	49.916	49.639	50.224	0					51	35	3	0	0	0	0.66915	1	16368	16368		30.569	3.876	1	70249	+		47958	13817	31842	31973	48557	48557					0.08222889028479585
VTPNVEPFL	9	Unmodified	_VTPNVEPFL_					0	0	0		ENST00000536851.1_1_12:21613985-21615680:+|nuORF;nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENSG00000121350|ENST00000240651|PYROXD1	ENST00000536851.1_1_12:21613985-21615680:+|nuORF	ENST00000536851.1_1_12:21613985-21615680:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2750549316406	2	508.276575	1014.5386	-0.11063	-5.6229E-05	-2.5418	-0.0012919	-2.6524	-0.0013481	508.2753879896617	36.475	0.31815	36.475	36.329	36.647	0					10	5	2	0	0	0	0.19605	1	14174	14174		62.107	0	1	160300			47959	3221	31843	31974	48558	48558					0.03190938211707817
VTPPGRLSSP	10	Unmodified	_VTPPGRLSSP_					0	0	0		ENST00000488090.1_1_10:101128283-101137029:+|nuORF	ENST00000488090.1_1_10:101128283-101137029:+|nuORF	ENST00000488090.1_1_10:101128283-101137029:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.78485107421875	2	505.785099	1009.55564	0.10686	5.4046E-05	0.27157	0.00013735	0.37842	0.0001914	505.78509329871525	31.008	0.24202	31.008	30.903	31.145	0					9	6	2	0	0	0	0.64162	1	10631	10631		29.17	4.6509	1	95022			47960	10043	31844	31975	48559	48559					0.051248588175326404
VTPPSILP	8	Unmodified	_VTPPSILP_					0	0	0		KRTAP10-5|p.C84Afs*285|1|0.37|ENSG00000241123|chr21:44580330-44580330|G/-|frameshift_variant	KRTAP10-5|p.C84Afs*285|1|0.37|ENSG00000241123|chr21:44580330-44580330|G/-|frameshift_variant	KRTAP10-5|p.C84Afs*285|1|0.37|ENSG00000241123|chr21:44580330-44580330|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	412.2496032714844	2	412.249829	822.485105	-0.077605	-3.1992E-05	-0.13899	-5.73E-05	-0.2166	-8.9293E-05	412.24976803115624	31.447	0.17766	31.447	31.388	31.566	0					6	4	2	0	0	0	0.70055	1	10836	10836		33.516	0	1	70910			47961	11267	31845	31976	48560	48560					0.06676185499861731
VTPQGGIVVY	10	Unmodified	_VTPQGGIVVY_					0	0	0		KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7909545898438	2	516.78985	1031.56515	0.20155	0.00010416	-0.084194	-4.3511E-05	0.11736	6.065E-05	516.7899954988869	36.487	1.5668	36.487	35.279	36.846	0					54	31	2	0	0	0	0.55603	1	14173	14173		39.253	3.6345	1	197370			47962	11259	31846	31977	48561	48561					0.05062627103052364
VTPSCCRK	8	Carbamidomethyl (C)	_VTPSC(Carbamidomethyl (C))CRK_	VTPSC(0.5)C(0.5)RK		VTPSC(0)C(0)RK		0	1	0		ENST00000283943.9_1_2:230632112-230632244:-|nuORF	ENST00000283943.9_1_2:230632112-230632244:-|nuORF	ENST00000283943.9_1_2:230632112-230632244:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7322082519531	2	475.730954	949.447356	2.2969	0.0010927	0.45863	0.00021819	2.7555	0.0013109	475.7311416300784	19.318	0.46218	19.318	19.014	19.476	0					27	9	4	0	0	0	0.46905	1	5939	5939		63.306	63.306	2	954170			47963	8421	31847	31978	48562	48562	366;367				-0.02938972028914577
VTPSKIVTK	9	Unmodified	_VTPSKIVTK_					0	0	0			REV__KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant	REV__KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.8744812011719	3	324.874454	971.601532	0.55761	0.00018115	-0.38065	-0.00012366	0.17696	5.7491E-05	324.8742349494322	21.151	0.36094	21.151	20.847	21.208	0					14	7	3	0	0	0	0.35021	1	6984	6984		53.089	8.0668	1	525250	+		47964	16930	31848	31979	48563	48563					0.11459503999753906
VTPSRLPTEP	10	Unmodified	_VTPSRLPTEP_					0	0	0		nc|ENSG00000088053|Q9HCN6|GP6;ENSG00000088053|ENST00000310373|GP6	nc|ENSG00000088053|Q9HCN6|GP6	nc|ENSG00000088053|Q9HCN6|GP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.20477294921875	3	366.204751	1095.59242	0.27426	0.00010044	-0.34168	-0.00012512	-0.067413	-2.4687E-05	366.2045974673254	22.477	0.1672	22.477	22.367	22.534	0					6	3	2	0	0	0	0.58896	1	7602	7602		47.96	0	1	161570			47965	1773	31849	31980	48564	48564					0.04845110643418593
VTPYDLVR	8	Unmodified	_VTPYDLVR_					0	0	0		nc|ENSG00000134668|Q6ZMY3-4|SPOCD1;nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.76898193359375	2	481.768917	961.523281	-1.3288	-0.00064018	0.82949	0.00039962	-0.49932	-0.00024056	481.769508603467	32.444	0.60582	32.444	32.139	32.745	0					64	25	4	0	0	0	0.77246	1	10893	10893		24.203	1.6231	1	481020			47966	3934	31850	31981	48565	48565					0.04098071414523474
VTQALNVL	8	Unmodified	_VTQALNVL_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000493232.5_1_7:2583168-2583660:-|nuORF;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2579345703125	2	429.258185	856.501818	0.18195	7.8105E-05	0.146	6.2672E-05	0.32795	0.00014078	429.258209052238	27.034	0.13012	27.034	26.988	27.118	0					6	3	2	0	0	0	0.3961	1	8799	8799		71.296	0	1	63922			47967	2414	31851	31982	48566	48566					0.06782686385793113
VTQALNVL	8	Unmodified	_VTQALNVL_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000493232.5_1_7:2583168-2583660:-|nuORF;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	429.2579040527344	2	429.258185	856.501818	-0.25909	-0.00011122	0.65048	0.00027922	0.39139	0.00016801	429.2584424188002	27.056	0.2429	27.056	26.976	27.219	0					9	6	2	0	0	0	0.28427	1	8797	8797		87.754	0	1	83204			47968	2414	31851	31982	48567	48567					0.06782686385793113
VTQAPISAR	9	Unmodified	_VTQAPISAR_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.771728515625	2	471.771991	941.529429	0.58067	0.00027394	-1.3174	-0.00062149	-0.73669	-0.00034755	471.7714346258157	21.289	0.1521	21.289	21.187	21.34	0					5	3	2	0	0	0	0.22823	1	6753	6753		58.246	10.287	1	201700			47969	2118	31852	31983	48568	48568					0.056325896460293734
VTQAPISAR	9	Unmodified	_VTQAPISAR_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7718811035156	2	471.771991	941.529429	0.19289	9.0998E-05	-0.52446	-0.00024743	-0.33157	-0.00015643	471.7716252137663	21.428	0.35714	21.428	21.175	21.533	0					18	8	3	0	0	0	0.38666	1	6770	6770		42.864	0.46813	1	652660			47970	2118	31852	31983	48569	48569					0.056325896460293734
VTQAPISAR	9	Unmodified	_VTQAPISAR_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.7716064453125	2	471.771991	941.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.207	1	21.207	20.707	21.707	0								0	0	0	0.014733	1	6996	6996		104.42	10.826	1				47971	2118	31852	31983	48570	48570					0.056325896460293734
VTQAPISAR	9	Unmodified	_VTQAPISAR_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	471.77166748046875	2	471.771991	941.529429	-0.55952	-0.00026397	-0.15719	-7.4158E-05	-0.71671	-0.00033812	471.77188850642233	21.198	0.26277	21.198	20.992	21.254	0					11	5	4	0	0	0	0.046074	1	6851	6851		96.665	18.401	1	612000			47972	2118	31852	31983	48571	48571					0.056325896460293734
VTQDFMMYR	9	Unmodified	_VTQDFMMYR_					0	0	0		CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant;ENSG00000103811|ENST00000220166|CTSH;ENST00000527715.5_1_15:79214474-79217794:-|nuORF;ENST00000533777.5_1_15:79214474-79223953:-|nuORF;ENST00000534237.5_1_15:79214474-79224366:-|nuORF	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	595.7706298828125	2	595.770277	1189.526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.437	1	38.437	37.937	38.937	0								0	0	0	0.029433	1	14605	14605		96.034	44.698	1				47973	714	31853	31984	48572	48572					-0.061181645144870345
VTQDFMMYR	9	Unmodified	_VTQDFMMYR_					0	0	0		CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant;ENSG00000103811|ENST00000220166|CTSH;ENST00000527715.5_1_15:79214474-79217794:-|nuORF;ENST00000533777.5_1_15:79214474-79223953:-|nuORF;ENST00000534237.5_1_15:79214474-79224366:-|nuORF	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	596.2717895507812	2	595.770277	1189.526	1.3533	0.00080627	-1.4512	-0.00086459	-0.09789	-5.832E-05	595.7695466686909	38.404	0.29469	38.404	38.333	38.628	0					18	10	3	0	0	0	0.02953	1	15066	15066		109.48	56.127	1	183660			47974	714	31853	31984	48573	48573					-0.061181645144870345
VTQDFMMYR	9	Unmodified	_VTQDFMMYR_					0	0	0		CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant;ENSG00000103811|ENST00000220166|CTSH;ENST00000527715.5_1_15:79214474-79217794:-|nuORF;ENST00000533777.5_1_15:79214474-79223953:-|nuORF;ENST00000534237.5_1_15:79214474-79224366:-|nuORF	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	CTSH|p.N292Mfs*8|1|0.31|ENSG00000103811|chr15:78923050-78923050|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.7699584960938	2	595.770277	1189.526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.365	1	38.365	37.865	38.865	0								0	0	0	0.010204	1	15078	15078		109.44	61.781	1				47975	714	31853	31984	48574	48574					-0.061181645144870345
VTQEIVTER	9	Unmodified	_VTQEIVTER_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.7936401367188	2	537.793121	1073.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.521	1	24.521	24.021	25.021	0								0	0	0	0.092488	1	7658	7658		73.841	13.723	1				47976	1212	31854	31985	48575	48575					0.03784520263752711
VTQGAQYQK	9	Unmodified	_VTQGAQYQK_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7685241699219	2	511.766906	1021.51926	-0.44737	-0.00022895	3.7942	0.0019417	3.3468	0.0017128	511.7679926351528	18.18	0.27192	18.18	18.072	18.344	0					16	5	5	0	0	0	0.4966	1	5526	5526		32.812	4.9302	1	1211400	+		47977	15399	31855	31986	48576	48576					0.009359819208043518
VTQHPPPRV	9	Unmodified	_VTQHPPPRV_					0	0	0			REV__ENST00000392038.6_1_19:40738806-40739223:-|nuORF	REV__ENST00000392038.6_1_19:40738806-40739223:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7930908203125	2	515.793258	1029.57196	1.1177	0.00057651	-0.61838	-0.00031896	0.49933	0.00025755	515.792643401401	25.344	0.19525	25.344	25.265	25.46	0					6	4	2	0	0	0	0.53083	1	8043	8043		29.15	1.2673	1	102730	+		47978	18817	31856	31987	48577	48577					0.05835984774262215
VTQKTNSLI	9	Unmodified	_VTQKTNSLI_					0	0	0			REV__tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1	REV__tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.29425048828125	2	502.292756	1002.57096	0.13941	7.0027E-05	1.9153	0.00096204	2.0547	0.0010321	502.2939183895761	13.522	0.049974	13.522	13.498	13.548	0					4	2	2	0	0	0	0.22823	1	2734	2734		42.864	2.8061	1	36243	+		47979	22172	31857	31988	48578	48578					0.06977725614717656
VTQKTVPT	8	Unmodified	_VTQKTVPT_					0	0	0		CASQ2|p.Q69Tfs*10|1|0.44|ENSG00000118729|chr1:115768337-115768338|-/T|frameshift_variant	CASQ2|p.Q69Tfs*10|1|0.44|ENSG00000118729|chr1:115768337-115768338|-/T|frameshift_variant	CASQ2|p.Q69Tfs*10|1|0.44|ENSG00000118729|chr1:115768337-115768338|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.2552795410156	2	437.255643	872.496732	0.72255	0.00031594	-1.6177	-0.00070734	-0.89512	-0.00039139	437.25473476314687	31.861	0.26553	31.861	31.751	32.017	0					7	5	2	0	0	0	0.41701	1	11969	11969		68.787	1.2932	1	560800			47980	381	31858	31989	48579	48579					0.05538382523195651
VTQLGSQL	8	Unmodified	_VTQLGSQL_					0	0	0		nc|ENSG00000150961|O94855-2|SEC24D;ENSG00000150961|ENST00000280551|SEC24D;ENST00000514561.5_1_4:119681750-119745902:-|nuORF	nc|ENSG00000150961|O94855-2|SEC24D	nc|ENSG00000150961|O94855-2|SEC24D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2390441894531	2	423.239993	844.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.635	1	35.635	35.135	36.135	0								0	0	0	1.7419	1	13379	13379		59.931	0	1				47981	4939	31859	31990	48580	48580					0.03697809489096926
VTQNGGLYK	9	Unmodified	_VTQNGGLYK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.2637023925781	2	490.263999	978.513445	-0.12285	-6.0228E-05	0.30019	0.00014717	0.17734	8.6944E-05	490.2640601556584	20.639	0.18313	20.639	20.558	20.741	0					7	5	2	0	0	0	0.13109	1	5551	5551		65.465	10.689	1	88492			47982	2047	31860	31991	48581	48581					0.023328834091330464
VTQNGGLYK	9	Unmodified	_VTQNGGLYK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.2635803222656	2	490.263999	978.513445	-1.2561	-0.00061582	0.79686	0.00039067	-0.45924	-0.00022515	490.26436266212556	20.664	0.14434	20.664	20.586	20.73	0					11	4	3	0	0	0	0.0063888	1	5800	5800		148.99	52.796	1	357880			47983	2047	31860	31991	48582	48582					0.023328834091330464
VTQNGGLYK	9	Unmodified	_VTQNGGLYK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2637634277344	2	490.263999	978.513445	0.59672	0.00029255	-0.91254	-0.00044739	-0.31582	-0.00015483	490.2635216088589	20.872	0.21588	20.872	20.764	20.98	0					9	4	3	0	0	0	0.0055674	1	6843	6843		153.04	48.289	1	2592700			47984	2047	31860	31991	48583	48583					0.023328834091330464
VTQNGGLYK	9	Unmodified	_VTQNGGLYK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2637023925781	2	490.263999	978.513445	-0.11435	-5.606E-05	-0.46528	-0.00022811	-0.57963	-0.00028417	490.26378080519476	20.722	0.14758	20.722	20.644	20.792	0					7	3	3	0	0	0	0.047855	1	5882	5882		90.37	0	1	159470			47985	2047	31860	31991	48584	48584					0.023328834091330464
VTQNGGLYK	9	Unmodified	_VTQNGGLYK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.263671875	2	490.263999	978.513445	-2.7942	-0.0013699	2.2425	0.0010994	-0.55165	-0.00027045	490.26494617464925	20.733	0.19664	20.733	20.629	20.825	0					7	4	2	0	0	0	0.085655	1	5893	5893		76.774	16.48	1	223710			47986	2047	31860	31991	48585	48585					0.023328834091330464
VTQNGGLYK	9	Unmodified	_VTQNGGLYK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.26385498046875	2	490.263999	978.513445	0.76936	0.00037719	-0.83442	-0.00040909	-0.065059	-3.1896E-05	490.2635355896026	20.883	0.26595	20.883	20.776	21.042	0					8	5	2	0	0	0	0.010427	1	6699	6699		136.27	28.181	1	1327300			47987	2047	31860	31991	48586	48586					0.023328834091330464
VTQNGGLYK	9	Unmodified	_VTQNGGLYK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2638854980469	2	490.263999	978.513445	2.6598	0.001304	-2.5269	-0.0012388	0.1329	6.5158E-05	490.2627276677958	20.867	0.2166	20.867	20.759	20.976	0					12	4	4	0	0	0	0.010427	1	6712	6712		136.27	33.495	1	1557300			47988	2047	31860	31991	48587	48587					0.023328834091330464
VTQPPPEMNVI	11	Oxidation (M)	_VTQPPPEM(Oxidation (M))NVI_		VTQPPPEM(1)NVI		VTQPPPEM(62)NVI	0	0	1			REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	REV__PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.2159423828125	3	414.212918	1239.61692	2.8384	0.0011757	3.0325	0.0012561	5.8709	0.0024318	414.21466813727193	23.73	2.3433	23.73	22.555	24.899	0					77	47	4	0	0	0	0.3077	1	8018	8018		61.765	10.237	1	819200	+		47989	15901	31861	31992	48588	48588		606			0.006700027346369097
VTQQINERK	9	Unmodified	_VTQQINERK_					0	0	0		nc|ENSG00000131089|O43307-3|ARHGEF9;ARHGEF9|p.I414Nfs*18|1|0.2|ENSG00000131089|chrX:63655553-63655554|-/T|frameshift_variant;ARHGEF9|p.I414Yfs*34|1|0.28|ENSG00000131089|chrX:63655554-63655554|T/-|frameshift_variant;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.311767578125	2	558.312012	1114.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.06	1	15.06	14.56	15.56	0								0	0	0	0.18645	1	3205	3205		52.937	5.2794	1				47990	219	31862	31993	48589	48589					0.05675031249234053
VTQSDLYKK	9	Unmodified	_VTQSDLYKK_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.2992553710938	2	541.298039	1080.58152	1.0408	0.0005634	2.5379	0.0013737	3.5787	0.0019371	541.2994354275055	19.602	0.11958	19.602	19.517	19.636	0					5	3	2	0	0	0	0.48623	1	5109	5109		33.922	3.6039	1	50448			47991	2094	31863	31994	48590	48590					0.04445708269122406
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.2744445800781	2	502.274564	1002.53457	-0.044573	-2.2388E-05	-0.26901	-0.00013512	-0.31358	-0.0001575	502.27442393508574	18.373	0.2234	18.373	18.279	18.503	0					23	9	3	0	0	0	4.2656E-05	1	4545	4545		195.57	10.023	1	3003600			47992	7487	31864	31995	48591	48591					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.274658203125	2	502.274564	1002.53457	-0.072831	-3.6581E-05	0.51915	0.00026075	0.44631	0.00022417	502.2748406876517	18.679	0.25527	18.679	18.547	18.803	0					17	6	3	0	0	0	4.2656E-05	1	5494	5494		195.57	37.498	1	15679000			47993	7487	31864	31995	48592	48592					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.2749328613281	2	502.274564	1002.53457	-0.92121	-0.0004627	0.99313	0.00049882	0.071922	3.6125E-05	502.27503699362654	18.389	0.2198	18.389	18.283	18.503	0					27	8	4	0	0	0	4.2656E-05	1	4773	4773		195.57	24.041	1	4844600			47994	7487	31864	31995	48593	48593					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2745056152344	2	502.274564	1002.53457	0.9754	0.00048992	-0.90745	-0.00045579	0.067949	3.4129E-05	502.27415735336547	18.603	0.31868	18.603	18.443	18.761	0					14	6	3	0	0	0	1.1403000000000002E-19	1	5723	5723		253.05	52.891	1	24843000			47995	7487	31864	31995	48594	48594					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.27471923828125	2	502.274564	1002.53457	-0.53985	-0.00027115	0.48097	0.00024158	-0.058877	-2.9573E-05	502.2749327413865	18.586	0.11638	18.586	18.527	18.644	0					4	2	2	0	0	0	0.024086	1	5740	5740		109.44	34.395	1	415700			47996	7487	31864	31995	48595	48595					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2745666503906	2	502.274564	1002.53457	0.13801	6.932E-05	-0.078388	-3.9372E-05	0.059624	2.9948E-05	502.2744708276058	18.442	0.25583	18.442	18.335	18.591	0					19	7	4	0	0	0	4.983E-08	1	4804	4804		209.21	13.396	1	3384900			47997	7487	31864	31995	48596	48596					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.2745056152344	2	502.274564	1002.53457	1.1479	0.00057654	-0.59051	-0.0002966	0.55735	0.00027994	502.2743332173876	18.613	0.44202	18.613	18.404	18.846	0					21	9	5	0	0	0	0.00076124	1	5589	5589		182.39	24.317	1	18806000			47998	7487	31864	31995	48597	48597					0.033408487179940494
VTQSEIAQKQK	11	Unmodified	_VTQSEIAQKQK_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	630.3516235351562	2	630.351334	1258.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.477	1	16.477	15.977	16.977	0								0	0	0	1.4627E-16	1	4716	4716		183.72	87.688	1				47999	7487	31865	31996	48598	48598					0.06911838763653577
VTQSWPGSGIA	11	Unmodified	_VTQSWPGSGIA_					0	0	0			REV__SDK2|p.P1324Lfs*69|1|0.1|ENSG00000069188|chr17:73391466-73391466|G/-|frameshift_variant	REV__SDK2|p.P1324Lfs*69|1|0.1|ENSG00000069188|chr17:73391466-73391466|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.1883544921875	3	368.189101	1101.54547	0.92361	0.00034006	-3.7183	-0.001369	-2.7947	-0.001029	368.1880640750846	40.399	0.24649	40.399	40.257	40.503	0					10	5	3	0	0	0	0.63225	1	16049	16049		34.087	3.5176	1	90926	+		48000	13160	31866	31997	48599	48599					-0.0012374890768569458
VTQTTARR	8	Unmodified	_VTQTTARR_					0	0	0		ENST00000599471.5_1_19:35761650-35769699:+|nuORF;ENST00000595068.5_1_19:35761993-35769966:+|nuORF	ENST00000599471.5_1_19:35761650-35769699:+|nuORF	ENST00000599471.5_1_19:35761650-35769699:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.76605224609375	2	466.76724	931.519927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.604	1	27.604	27.104	28.104	0								0	0	0	1.7419	1	8527	8527		37.812	2.1932	1				48001	10993	31867	31998	48600	48600					0.051428213605163364
VTQVEKYY	8	Unmodified	_VTQVEKYY_					0	0	0			REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.30078125	2	515.266207	1028.51786	0.16988	8.7531E-05	0.17825	9.1844E-05	0.34812	0.00017938	515.2662432421088	29.925	0.13742	29.925	29.861	29.999	0					9	5	2	0	0	0	0.60719	1	9467	9467		47.916	0	1	180430	+		48002	13992	31868	31999	48601	48601					0.004743478320506256
VTRDLPKV	8	Unmodified	_VTRDLPKV_					0	0	0			REV__UGT2B4|p.A460T|1|0.28|ENSG00000156096|chr4:69480843-69480843|C/T|missense_variant	REV__UGT2B4|p.A460T|1|0.28|ENSG00000156096|chr4:69480843-69480843|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.2845458984375	2	464.284734	926.554916	-0.43378	-0.0002014	0.52856	0.0002454	0.094779	4.4004E-05	464.28486034531807	36.854	0.1163	36.854	36.813	36.93	0					8	5	2	0	0	0	0.5535	1	13202	13202		54.776	1.4249	1	33164	+		48003	22258	31869	32000	48602	48602					0.08870064168456793
VTRFGGDRV	9	Unmodified	_VTRFGGDRV_					0	0	0		ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant;ACACB|p.T1476Hfs*7|1|0.28|ENSG00000076555|chr12:109235620-109235621|-/T|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB;ENST00000546328.1_1_12:109577795-109604957:+|nuORF;nc|ENSG00000076555|O00763-2|ACACB	ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant	ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.273681640625	2	503.775065	1005.53558	-0.41723	-0.00021019	-2.3068	-0.0011621	-2.724	-0.0013723	504.27573832709385	37.596	0.1596	37.596	37.467	37.627	0					6	3	2	0	0	0	0.40353	1	14693	14693		41.427	1.3684	1	71246			48004	30	31870	32001	48603	48603					0.0330310787757071
VTRFVNEAV	9	Unmodified	_VTRFVNEAV_					0	0	0		HADHA|p.R676H|1|0.4|ENSG00000084754|chr2:26191602-26191602|C/T|missense_variant;ENST00000540341.1_1_12:8789534-8790158:+|nuORF;ENSG00000084754|ENST00000380649|HADHA	HADHA|p.R676H|1|0.4|ENSG00000084754|chr2:26191602-26191602|C/T|missense_variant	HADHA|p.R676H|1|0.4|ENSG00000084754|chr2:26191602-26191602|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	345.52655029296875	3	345.525825	1033.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.754	1	13.754	13.254	14.254	0								0	0	0	0.3428	1	3269	3269		26.693	8.1619	1				48005	1719	31871	32002	48604	48604					0.040208588175119075
VTRGAPRGSS	10	Unmodified	_VTRGAPRGSS_					0	0	0			REV__ENST00000397091.9_1_8:38325804-38325987:-|nuORF	REV__ENST00000397091.9_1_8:38325804-38325987:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2710876464844	2	494.270147	986.525741	0.75878	0.00037504	1.8545	0.00091662	2.6133	0.0012917	494.2709995394924	30.919	0.393	30.919	30.788	31.181	0					26	9	4	0	0	0	0.61187	1	11193	11193		32.812	2.9709	1	1214100	+		48006	18907	31872	32003	48605	48605					0.031939198721943285
VTRGPATAT	9	Unmodified	_VTRGPATAT_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;TRIOBP|p.L1770Qfs*47|1|0.09|ENSG00000100106|chr22:37741018-37741019|-/AGTGT|frameshift_variant	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.24273681640625	2	437.243067	872.47158	-0.92102	-0.00040271	-0.18036	-7.8859E-05	-1.1014	-0.00048157	437.2428942801716	29.23	0.34519	29.23	29.038	29.383	0					20	14	2	0	0	0	0.21263	1	9489	9489		60.118	3.3972	1	123510			48007	1973	31873	32004	48606	48606					0.03024327720618203
VTRNGIFR	8	Unmodified	_VTRNGIFR_					0	0	0			REV__nc|ENSG00000185483|Q01973-3|ROR1	REV__nc|ENSG00000185483|Q01973-3|ROR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.7793884277344	2	481.780151	961.545748	-0.10513	-5.065E-05	-1.4977	-0.00072157	-1.6028	-0.00077222	481.7794432252579	27.972	0.11433	27.972	27.915	28.029	0					4	2	2	0	0	0	0.67394	1	10210	10210		37.159	1.5408	1	95448	+		48008	17028	31874	32005	48607	48607					0.06343715602793054
VTRRTPRG	8	Unmodified	_VTRRTPRG_					0	0	0			REV__ENST00000338573.9_2_16:21312284-21312482:+|nuORF	REV__ENST00000338573.9_2_16:21312284-21312482:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7840881347656	2	471.783225	941.551896	3.7888	0.0017875	-1.4102	-0.00066532	2.3786	0.0011222	471.78254581128044	19.291	0.14816	19.291	19.221	19.369	0					7	4	2	0	0	0	0.67394	1	5191	5191		37.159	0	1	96186	+		48009	18434	31875	32006	48608	48608					0.0787823383432169
VTRWGEQI	8	Unmodified	_VTRWGEQI_					0	0	0			REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.7644958496094	2	494.764166	987.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.213	1	33.213	32.713	33.713	0								0	0	0	1.7419	1	11632	11632		44.377	0	1		+		48010	17718	31876	32007	48609	48609					0.019523031289850223
VTSAEIQVTR	10	Unmodified	_VTSAEIQVTR_					0	0	0			REV__ENST00000473479.5_1_2:242274588-242275589:+|nuORF	REV__ENST00000473479.5_1_2:242274588-242275589:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.5392761230469	3	368.540022	1102.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.667	1	30.667	30.167	31.167	0								0	0	0	0.3805	1	11380	11380		34.087	2.0524	1		+		48011	16253	31877	32008	48610	48610					0.05104209155092576
VTSAFLLAK	9	Unmodified	_VTSAFLLAK_					0	0	0		nc|ENSG00000010270|O95772-2|STARD3NL;ENSG00000010270|ENST00000009041|STARD3NL	nc|ENSG00000010270|O95772-2|STARD3NL	nc|ENSG00000010270|O95772-2|STARD3NL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2889709472656	2	475.289485	948.564418	-0.11984	-5.6961E-05	-0.49868	-0.00023702	-0.61852	-0.00029398	475.28908844547925	37.244	0.15027	37.244	37.167	37.317	0					7	4	2	0	0	0	0.20551	1	14567	14567		60.972	7.6205	1	69829			48012	1033	31878	32009	48611	48611					0.08807832453999254
VTSAFLLAK	9	Unmodified	_VTSAFLLAK_					0	0	0		nc|ENSG00000010270|O95772-2|STARD3NL;ENSG00000010270|ENST00000009041|STARD3NL	nc|ENSG00000010270|O95772-2|STARD3NL	nc|ENSG00000010270|O95772-2|STARD3NL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2891540527344	2	475.289485	948.564418	-0.60891	-0.00028941	-0.11915	-5.6631E-05	-0.72806	-0.00034604	475.2893957695239	37.179	0.21684	37.179	37.068	37.285	0					6	4	2	0	0	0	0.12239	1	14521	14521		74.255	15.473	1	109480			48013	1033	31878	32009	48612	48612					0.08807832453999254
VTSAVNVAK	9	Unmodified	_VTSAVNVAK_					0	0	0		PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant;PLIN4|p.G1001Afs*9|1|0.16|ENSG00000167676|chr19:4510916-4510916|C/-|frameshift_variant;ENSG00000167676|ENST00000301286|PLIN4	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	PLIN4|p.A561Qfs*13|1|0.1|ENSG00000167676|chr19:4512237-4512237|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	444.7608947753906	2	444.761092	887.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.209	1	20.209	19.709	20.709	0								0	0	0	0.024201	1	6514	6514		98.629	4.623	1				48014	6018	31879	32010	48613	48613					0.059377848974691005
VTSCFLVEK	9	Carbamidomethyl (C)	_VTSC(Carbamidomethyl (C))FLVEK_	VTSC(1)FLVEK		VTSC(110)FLVEK		0	1	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.7814331054688	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.049	1	33.049	32.549	33.549	0								0	0	0	0.012693	1	12189	12189		106.68	13.488	1				48015	5941	31880	32011	48614	48614	249				0.010269635057284177
VTSDHLKGLH	10	Unmodified	_VTSDHLKGLH_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1;SBF1|p.L946Wfs*16|1|0.26|ENSG00000100241|chr22:50461526-50461526|G/-|frameshift_variant;SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant;SBF1|p.S1077Afs*28|3|0.34|ENSG00000100241|chr22:50460327-50460327|G/-|frameshift_variant;ENST00000444527.2_1_8:56365111-56365366:-|nuORF	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	369.53662109375	3	369.536612	1105.58801	0.8734	0.00032275	0.89988	0.00033254	1.7733	0.00065529	369.53645787467786	27.145	0.82714	27.145	26.885	27.712	0					27	16	4	0	0	0	0.63073	1	9694	9694		28.081	5.5018	1	1347300			48016	1988	31881	32012	48615	48615					0.03943646220523078
VTSEKCSL	8	Unmodified	_VTSEKCSL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.7163391113281	2	433.718036	865.421518	-0.45754	-0.00019844	-2.9804	-0.0012927	-3.438	-0.0014911	433.71671273319083	32.2	0.29031	32.2	32.095	32.385	0					8	6	2	0	0	0	0.49887	1	12228	12228		60.294	0	1	78737			48017	5134;11594	31882	32013	48616	48616					-0.01657542999555517
VTSEVPFSK	9	Unmodified	_VTSEVPFSK_					0	0	0		ENST00000453217.1_1_17:15987383-15987569:+|nuORF;RPL22|p.K89Nfs*3|1|0.38|ENSG00000116251|chr1:6186792-6186792|T/-|frameshift_variant;ENSG00000116251|ENST00000234875|RPL22	ENST00000453217.1_1_17:15987383-15987569:+|nuORF	ENST00000453217.1_1_17:15987383-15987569:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.2657470703125	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.089	1	29.089	28.589	29.589	0								0	0	0	0.13425	1	10351	10351		63.534	17.562	1				48018	2975	31883	32014	48617	48617					0.02130347832053303
VTSFAELAKG	10	Unmodified	_VTSFAELAKG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2;RUSC2|p.A585Pfs*62|2|0.49|ENSG00000198853|chr9:35548269-35548269|G/-|frameshift_variant	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.77947998046875	2	511.779482	1021.54441	0.45161	0.00023112	-0.49031	-0.00025093	-0.038699	-1.9806E-05	511.77948503132774	38.901	0.23196	38.901	38.739	38.971	0					10	8	2	0	0	0	0.47859	1	15288	15288		47.657	0	1	36310			48019	7625	31884	32015	48618	48618					0.03450036723370431
VTSFDVKAV	9	Unmodified	_VTSFDVKAV_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.2737731933594	2	483.26875	964.522947	0.032182	1.5553E-05	-0.36542	-0.0001766	-0.33324	-0.00016104	483.26851001335723	40.214	0.61149	40.214	40.016	40.628	0					91	36	5	0	0	0	0.50761	1	12969	12969		31.53	9.5699	1	4337000	+		48020	17458	31885	32016	48619	48619					0.03926651694666816
VTSFQTSTM	9	Unmodified	_VTSFQTSTM_					0	0	0		HEG1|p.P916Lfs*2|1|0.07|ENSG00000173706|chr3:125012832-125012832|G/-|frameshift_variant;nc|ENSG00000173706|Q9ULI3-2|HEG1;HEG1|p.S1105Qfs*21|1|0.12|ENSG00000173706|chr3:125002300-125002300|A/-|frameshift_variant;ENSG00000173706|ENST00000311127|HEG1;HEG1|p.P754L|1|0.29|ENSG00000173706|chr3:125013318-125013318|G/A|missense_variant	HEG1|p.P916Lfs*2|1|0.07|ENSG00000173706|chr3:125012832-125012832|G/-|frameshift_variant	HEG1|p.P916Lfs*2|1|0.07|ENSG00000173706|chr3:125012832-125012832|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.23388671875	2	501.23405	1000.45355	1.1196	0.0005612	-1.1761	-0.00058952	-0.056498	-2.8319E-05	501.23366066372773	30.09	2.1481	30.09	28.245	30.393	0					82	43	4	0	0	0	0.30951	1	11016	11016		49.442	7.0454	1	1576400			48021	6445	31886	32017	48620	48620					-0.04666175316401677
VTSGAVAFGKQ	11	Unmodified	_VTSGAVAFGKQ_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7922973632812	2	532.790381	1063.56621	2.3568	0.0012557	1.0465	0.00055755	3.4032	0.0018132	532.7910553512636	13.306	0.12458	13.306	13.265	13.389	0					6	3	2	0	0	0	0.30464	1	3009	3009		62.107	1.1355	1	929560			48022	1311	31887	32018	48621	48621					0.036968414719467546
VTSGKAAPL	9	Unmodified	_VTSGKAAPL_					0	0	0			REV__CNTN3|p.S585Ifs*9|1|0.05|ENSG00000113805|chr3:74302724-74302725|-/GGAAATA|frameshift_variant	REV__CNTN3|p.S585Ifs*9|1|0.05|ENSG00000113805|chr3:74302724-74302725|-/GGAAATA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.25018310546875	2	422.25036	842.486168	0.38016	0.00016052	-0.74046	-0.00031266	-0.3603	-0.00015214	422.2499048401864	23.697	0.19238	23.697	23.576	23.768	0					7	4	2	0	0	0	0.19605	1	7880	7880		62.107	7.3311	1	82046	+		48023	12536	31888	32019	48622	48622					0.05862399868738066
VTSGMEQIK	9	Oxidation (M)	_VTSGM(Oxidation (M))EQIK_		VTSGM(1)EQIK		VTSGM(55)EQIK	0	0	1			REV__ENSG00000144395|ENST00000389175|CCDC150	REV__ENSG00000144395|ENST00000389175|CCDC150	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	504.7552795410156	2	504.755149	1007.49575	-0.80998	-0.00040884	0.64529	0.00032571	-0.16469	-8.3128E-05	504.75553315037945	24.841	0.3995	24.841	24.734	25.134	0					21	13	2	0	0	0	0.25716	1	7630	7630		54.776	12.38	1	367440	+		48024	15230	31889	32020	48623	48623		580			-0.007701999080154565
VTSGPTVTTV	10	Unmodified	_VTSGPTVTTV_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.2628479003906	2	481.263665	960.512776	-1.3521	-0.00065071	0.27658	0.00013311	-1.0755	-0.00051761	481.26392375272786	22.799	0.10801	22.799	22.693	22.801	0					7	4	2	0	0	0	0.34667	1	6750	6750		62.107	5.6736	1	58858	+		48025	17519	31890	32021	48624	48624					0.030940439694177257
VTSGQSVRK	9	Unmodified	_VTSGQSVRK_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	481.273193359375	2	481.274898	960.535243	-2.9233	-0.0014069	-1.0715	-0.0005157	-3.9948	-0.0019226	481.27449587114467	36.217	0.21601	36.217	36.126	36.342	0					13	8	3	0	0	0	0.27249	1	12935	12935		52.937	52.937	1	175840			48026	7755	31891	32022	48625	48625					0.05339688157710043
VTSKALEL	8	Unmodified	_VTSKALEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-3|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	430.75775146484375	2	430.758018	859.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.122	1	31.122	30.622	31.622	0								0	0	0	1.7419	1	11297	11297		42.396	0	1				48027	2078	31892	32023	48626	48626					0.06611266665947824
VTSKGAGLSK	10	Unmodified	_VTSKGAGLSK_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000484981.1_1_3:58151207-58156486:+|nuORF;ENST00000481470.5_1_3:58155276-58156486:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2793273925781	2	474.279649	946.544745	0.28398	0.00013469	-0.65903	-0.00031257	-0.37505	-0.00017788	474.2792911689327	14.781	0.97988	14.781	14.104	15.084	0					40	24	3	0	0	0	0.078327	1	3688	3688		99.788	6.1903	1	536970			48028	4052	31893	32024	48627	48627					0.06933456443243813
VTSKGAGLSK	10	Unmodified	_VTSKGAGLSK_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000484981.1_1_3:58151207-58156486:+|nuORF;ENST00000481470.5_1_3:58155276-58156486:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.2803649902344	2	474.279649	946.544745	-1.6019	-0.00075974	2.0345	0.00096493	0.43264	0.00020519	474.28050847338864	14.513	0.20651	14.513	14.424	14.63	0					14	9	2	0	0	0	0.536	1	3159	3159		41.427	2.1738	1	50133			48029	4052	31893	32024	48628	48628					0.06933456443243813
VTSKGAGLSK	10	Unmodified	_VTSKGAGLSK_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000484981.1_1_3:58151207-58156486:+|nuORF;ENST00000481470.5_1_3:58155276-58156486:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2803039550781	2	474.279649	946.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.551	1	14.551	14.051	15.051	0								0	0	0	0.14595	1	3101	3101		70.816	6.6089	1				48030	4052	31893	32024	48629	48629					0.06933456443243813
VTSKGAGLSK	10	Unmodified	_VTSKGAGLSK_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000484981.1_1_3:58151207-58156486:+|nuORF;ENST00000481470.5_1_3:58155276-58156486:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.27923583984375	2	474.279649	946.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.744	1	14.744	14.244	15.244	0								0	0	0	0.05754	1	3736	3736		89.029	10.765	1				48031	4052	31893	32024	48630	48630					0.06933456443243813
VTSKVLTTK	9	Unmodified	_VTSKVLTTK_					0	0	0		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.80584716796875	2	488.8055	975.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.297	1	18.297	17.797	18.797	0								0	0	0	0.12732	1	4532	4532		65.157	20.78	1				48032	6008	31894	32025	48631	48631					0.1076720013712702
VTSKVLTTK	9	Unmodified	_VTSKVLTTK_					0	0	0		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.8051452636719	2	488.8055	975.596446	-0.40889	-0.00019987	0.38687	0.0001891	-0.022025	-1.0766E-05	488.8055621048875	18.596	0.094086	18.596	18.547	18.641	0					6	2	3	0	0	0	0.026848	1	5480	5480		112.11	26.946	1	396480			48033	6008	31894	32025	48632	48632					0.1076720013712702
VTSKVLTTK	9	Unmodified	_VTSKVLTTK_					0	0	0		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.8053894042969	2	488.8055	975.596446	0.6137	0.00029998	-1.1881	-0.00058074	-0.57439	-0.00028076	488.80496942611836	18.552	0.21774	18.552	18.493	18.711	0					7	4	3	0	0	0	0.067603	1	5728	5728		89.029	25.495	1	568540			48034	6008	31894	32025	48633	48633					0.1076720013712702
VTSKVLTTK	9	Unmodified	_VTSKVLTTK_					0	0	0		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.80560302734375	2	488.8055	975.596446	-2.8973	-0.0014162	2.9212	0.0014279	0.023829	1.1648E-05	488.80683834658134	18.371	0.078991	18.371	18.327	18.406	0					4	2	2	0	0	0	0.048471	1	4786	4786		95.815	21.56	1	80436			48035	6008	31894	32025	48634	48634					0.1076720013712702
VTSLLKTVK	9	Unmodified	_VTSLLKTVK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	330.2181701660156	3	330.21822	987.632832	0.54547	0.00018012	-0.68105	-0.0002249	-0.13558	-4.4772E-05	330.2179419992664	25.628	0.21841	25.628	25.519	25.738	0					7	4	2	0	0	0	0.41958	1	9129	9129		40.058	3.6114	1	472400			48036	4144;6333	31895	32026	48635	48635					0.13852077033845944
VTSLNMNKIEA	11	Unmodified	_VTSLNMNKIEA_					0	0	0			REV__tr|U7SFW9|U7SFW9_FUSNURNApolymerasesigma-70factor,ECFsubfamilyOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02263PE=3SV=1	REV__tr|U7SFW9|U7SFW9_FUSNURNApolymerasesigma-70factor,ECFsubfamilyOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02263PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.5511169433594	3	407.216551	1218.62782	0.98142	0.00039965	-0.2747	-0.00011186	0.70672	0.00028779	407.2165805301164	22.878	0.89519	22.878	22.766	23.661	0					46	21	3	0	0	0	0.39337	1	7493	7493		52.167	9.8291	1	839980	+		48037	21685	31896	32027	48636	48636					0.02725405108958512
VTSLSALRK	9	Unmodified	_VTSLSALRK_					0	0	0			REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.80322265625	2	487.803291	973.59203	-0.70501	-0.00034391	0.32051	0.00015635	-0.3845	-0.00018756	487.8034558795061	21.751	0.31323	21.751	21.642	21.955	0					17	6	4	0	0	0	0.054723	1	7245	7245		98.629	0	1	5247400	+		48038	12722	31897	32028	48637	48637					0.10417735714224818
VTSMSTQTK	9	Unmodified	_VTSMSTQTK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.74700927734375	2	491.747324	981.480096	0.80127	0.00039402	-2.7362	-0.0013455	-1.9349	-0.00095149	491.7465670396385	16.581	0.22524	16.581	16.407	16.632	0					9	5	3	0	0	0	0.048471	1	4538	4538		95.815	23.938	1	409910			48039	1706	31898	32029	48638	48638					-0.011384864250658211
VTSMSTQTK	9	Unmodified	_VTSMSTQTK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.74755859375	2	491.747324	981.480096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.318	1	16.318	15.818	16.818	0								0	0	0	0.069826	1	3889	3889		80.455	20.161	1				48040	1706	31898	32029	48639	48639					-0.011384864250658211
VTSMSTQTK	9	Unmodified	_VTSMSTQTK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.7471008300781	2	491.747324	981.480096	0.58185	0.00028612	-1.4478	-0.00071197	-0.86598	-0.00042584	491.7468029034028	16.524	0.31608	16.524	16.263	16.58	0					12	6	3	0	0	0	0.099758	1	4749	4749		79.489	9.8615	1	1425700			48041	1706	31898	32029	48640	48640					-0.011384864250658211
VTSMSTQTK	9	Unmodified	_VTSMSTQTK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.7476806640625	2	491.747324	981.480096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.367	1	16.367	15.867	16.867	0								0	0	0	0.2882	1	3866	3866		37.508	7.0045	1				48042	1706	31898	32029	48641	48641					-0.011384864250658211
VTSMSTQTK	9	Unmodified	_VTSMSTQTK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.7471923828125	2	491.747324	981.480096	0.81844	0.00040247	-1.9472	-0.00095752	-1.1287	-0.00055506	491.74662176556086	16.541	0.26643	16.541	16.333	16.6	0					12	5	3	0	0	0	0.11898	1	4613	4613		75.043	14.749	1	925300			48043	1706	31898	32029	48642	48642					-0.011384864250658211
VTSPLPPL	8	Unmodified	_VTSPLPPL_					0	0	0			REV__AOC2|p.Q309Pfs*27|1|0.41|ENSG00000131480|chr17:42845549-42845567|TTCAGTTCTCGCCCCAGGG/-|frameshift_variant	REV__AOC2|p.Q309Pfs*27|1|0.41|ENSG00000131480|chr17:42845549-42845567|TTCAGTTCTCGCCCCAGGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	412.24969482421875	2	412.249829	822.485105	-1.4417	-0.00059434	1.3604	0.00056081	-0.081333	-3.353E-05	412.25027357726213	31.429	0.15794	31.429	31.371	31.529	0					12	6	2	0	0	0	0.70055	1	10418	10418		33.516	0	1	92881	+		48044	12171	31899	32030	48643	48643					0.06676185499861731
VTSQFISKK	9	Unmodified	_VTSQFISKK_					0	0	0		ENST00000535985.1_1_11:71944736-71950103:+|nuORF;INPPL1|p.P977Tfs*7|1|0.5|ENSG00000165458|chr11:72237164-72237165|-/C|frameshift_variant;nc|ENSG00000165458|O15357-2|INPPL1;INPPL1|p.P976Hfs*155|1|0.31|ENSG00000165458|chr11:72237165-72237165|C/-|frameshift_variant;INPPL1|p.R1156Gfs*46|2|0.42|ENSG00000165458|chr11:72237704-72237704|C/-|frameshift_variant;ENSG00000165458|ENST00000298229|INPPL1	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	346.5380859375	3	346.537842	1036.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.068	1	20.068	19.568	20.568	0								0	0	0	0.3063	1	5309	5309		33.922	2.3918	1				48045	5797	31900	32031	48644	48644					0.07486315994378856
VTSQFISKK	9	Unmodified	_VTSQFISKK_					0	0	0		ENST00000535985.1_1_11:71944736-71950103:+|nuORF;INPPL1|p.P977Tfs*7|1|0.5|ENSG00000165458|chr11:72237164-72237165|-/C|frameshift_variant;nc|ENSG00000165458|O15357-2|INPPL1;INPPL1|p.P976Hfs*155|1|0.31|ENSG00000165458|chr11:72237165-72237165|C/-|frameshift_variant;INPPL1|p.R1156Gfs*46|2|0.42|ENSG00000165458|chr11:72237704-72237704|C/-|frameshift_variant;ENSG00000165458|ENST00000298229|INPPL1	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	346.8722839355469	3	346.537842	1036.5917	0.9242	0.00032027	-0.86371	-0.00029931	0.060487	2.0961E-05	346.5373762644205	20.394	0.11423	20.394	20.305	20.419	0					6	2	3	0	0	0	0.15558	1	6315	6315		66.962	19.002	1	114260			48046	5797	31900	32031	48645	48645					0.07486315994378856
VTSQFISKK	9	Unmodified	_VTSQFISKK_					0	0	0		ENST00000535985.1_1_11:71944736-71950103:+|nuORF;INPPL1|p.P977Tfs*7|1|0.5|ENSG00000165458|chr11:72237164-72237165|-/C|frameshift_variant;nc|ENSG00000165458|O15357-2|INPPL1;INPPL1|p.P976Hfs*155|1|0.31|ENSG00000165458|chr11:72237165-72237165|C/-|frameshift_variant;INPPL1|p.R1156Gfs*46|2|0.42|ENSG00000165458|chr11:72237704-72237704|C/-|frameshift_variant;ENSG00000165458|ENST00000298229|INPPL1	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.53765869140625	3	346.537842	1036.5917	0.34273	0.00011877	-0.96242	-0.00033352	-0.6197	-0.00021475	346.53752849199736	20.288	0.11884	20.288	20.229	20.348	0					4	2	2	0	0	0	0.24169	1	6563	6563		56.632	16.574	1	414430			48047	5797	31900	32031	48646	48646					0.07486315994378856
VTSQFISKK	9	Unmodified	_VTSQFISKK_					0	0	0		ENST00000535985.1_1_11:71944736-71950103:+|nuORF;INPPL1|p.P977Tfs*7|1|0.5|ENSG00000165458|chr11:72237164-72237165|-/C|frameshift_variant;nc|ENSG00000165458|O15357-2|INPPL1;INPPL1|p.P976Hfs*155|1|0.31|ENSG00000165458|chr11:72237165-72237165|C/-|frameshift_variant;INPPL1|p.R1156Gfs*46|2|0.42|ENSG00000165458|chr11:72237704-72237704|C/-|frameshift_variant;ENSG00000165458|ENST00000298229|INPPL1	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	ENST00000535985.1_1_11:71944736-71950103:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.30322265625	2	519.303124	1036.5917	-0.30921	-0.00016057	0.57406	0.00029811	0.26485	0.00013754	519.3034150953297	20.305	0.21652	20.305	20.195	20.412	0					10	4	3	0	0	0	0.049407	1	6569	6569		89.029	33.525	1	1628600			48048	5797	31900	32031	48647	48647					0.07486315994378856
VTSQIVEL	8	Unmodified	_VTSQIVEL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.75537109375	2	444.755475	887.496398	0.59138	0.00026302	-1.074	-0.00047766	-0.48261	-0.00021464	444.75500885558375	31.537	0.13233	31.537	31.413	31.545	0					5	3	2	0	0	0	0.49216	1	11484	11484		60.972	2.19	1	87405			48049	3311	31901	32032	48648	48648					0.04814962803345679
VTSQPCKK	8	Unmodified	_VTSQPCKK_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.741455078125	2	445.741845	889.469137	-0.45436	-0.00020253	-0.45337	-0.00020208	-0.90773	-0.00040461	445.7416318212753	20.802	0.1674	20.802	20.692	20.86	0					5	3	2	0	0	0	0.3961	1	6681	6681		71.296	7.9894	1	403570			48050	7595	31902	32033	48649	48649					0.01998155991304884
VTSQVSNLK	9	Unmodified	_VTSQVSNLK_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.27685546875	2	488.277106	974.53966	-0.016515	-8.0641E-06	-1.4262	-0.00069638	-1.4427	-0.00070444	488.2763894297369	21.096	0.11747	21.096	21.017	21.135	0					5	3	2	0	0	0	0.30841	1	5760	5760		49.536	0.094497	1	133050			48051	3825	31903	32034	48650	48650					0.05137152580618931
VTSQVSNLK	9	Unmodified	_VTSQVSNLK_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.277099609375	2	488.277106	974.53966	-0.38623	-0.00018859	0.70264	0.00034308	0.31642	0.0001545	488.27727556749284	21.429	0.22493	21.429	21.34	21.564	0					10	5	3	0	0	0	0.022525	1	6818	6818		117.81	4.3995	1	663420			48052	3825	31903	32034	48651	48651					0.05137152580618931
VTSQVSNLK	9	Unmodified	_VTSQVSNLK_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.276123046875	2	488.277106	974.53966	-1.2477	-0.00060924	0.21048	0.00010277	-1.0372	-0.00050646	488.27719554978086	21.128	0.10299	21.128	21.065	21.168	0					6	3	2	0	0	0	0.061298	1	6010	6010		91.265	21.638	1	187910			48053	3825	31903	32034	48652	48652					0.05137152580618931
VTSQVSNLK	9	Unmodified	_VTSQVSNLK_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.2772216796875	2	488.277106	974.53966	0.6199	0.00030268	-0.53736	-0.00026238	0.082544	4.0304E-05	488.27685642394374	21.316	0.1675	21.316	21.256	21.424	0					8	3	3	0	0	0	0.029571	1	7066	7066		109.44	16.296	1	856050			48054	3825	31903	32034	48653	48653					0.05137152580618931
VTSQVSNLK	9	Unmodified	_VTSQVSNLK_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	488.2771301269531	2	488.277106	974.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.214	1	21.214	20.714	21.714	0								0	0	0	0.091378	1	6109	6109		74.165	15.935	1				48055	3825	31903	32034	48654	48654					0.05137152580618931
VTSRRQPR	8	Unmodified	_VTSRRQPR_					0	0	0		CEP250|p.E698Hfs*36|1|0.27|ENSG00000126001|chr20:35478094-35478097|TAAG/-|frameshift_variant	CEP250|p.E698Hfs*36|1|0.27|ENSG00000126001|chr20:35478094-35478097|TAAG/-|frameshift_variant	CEP250|p.E698Hfs*36|1|0.27|ENSG00000126001|chr20:35478094-35478097|TAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.295166015625	2	500.293956	998.57336	2.92	0.0014609	-0.47376	-0.00023702	2.4463	0.0012239	500.29373070197386	34.221	0.55151	34.221	34.069	34.62	0					19	11	2	0	0	0	0.61938	1	13153	13153		45.952	45.952	1	4282400			48056	483	31904	32035	48655	48655					0.07401618863036674
VTSSETVVK	9	Unmodified	_VTSSETVVK_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;ENST00000560809.5_1_15:52548900-52557395:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.26336669921875	2	475.263665	948.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.357	1	19.357	18.857	19.857	0								0	0	0	0.13137	1	5826	5826		64.207	5.4253	1				48057	3564	31905	32036	48656	48656					0.03646043969445145
VTSSETVVK	9	Unmodified	_VTSSETVVK_					0	0	0		MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;ENST00000560809.5_1_15:52548900-52557395:-|nuORF	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.26336669921875	2	475.263665	948.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.264	1	19.264	18.764	19.764	0								0	0	0	0.12601	1	6059	6059		65.465	15.441	1				48058	3564	31905	32036	48657	48657					0.03646043969445145
VTSSKRLLQ	9	Unmodified	_VTSSKRLLQ_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.3141479492188	2	516.314023	1030.61349	1.334	0.00068877	-0.87333	-0.00045091	0.46069	0.00023786	516.3135664370454	21.619	0.14932	21.619	21.544	21.694	0					11	4	3	0	0	0	0.047855	1	5991	5991		69.628	7.5202	1	512670	+		48059	16668	31906	32037	48658	48658					0.0994112074295117
VTSSKRLLQ	9	Unmodified	_VTSSKRLLQ_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	516.8154907226562	2	516.314023	1030.61349	1.245	0.0006428	-0.75423	-0.00038942	0.49075	0.00025338	516.313563486417	21.993	0.3131	21.993	21.867	22.18	0					19	7	5	0	0	0	0.12278	1	7072	7072		67.494	14.557	1	3250400	+		48060	16668	31906	32037	48659	48659					0.0994112074295117
VTSSKRLLQ	9	Unmodified	_VTSSKRLLQ_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.314208984375	2	516.314023	1030.61349	1.4597	0.00075367	-0.90046	-0.00046492	0.55924	0.00028875	516.3134665979337	21.866	0.16356	21.866	21.809	21.972	0					6	3	2	0	0	0	0.090954	1	7327	7327		65.465	1.9315	1	2401500	+		48061	16668	31906	32037	48660	48660					0.0994112074295117
VTSSKRLLQ	9	Unmodified	_VTSSKRLLQ_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.3140258789062	2	516.314023	1030.61349	0.79674	0.00041137	-0.78856	-0.00040714	0.0081828	4.2249E-06	516.313706945515	21.728	0.19093	21.728	21.629	21.82	0					8	4	3	0	0	0	0.13726	1	6359	6359		54.776	8.3195	1	518180	+		48062	16668	31906	32037	48661	48661					0.0994112074295117
VTSSLGSVPD	10	Unmodified	_VTSSLGSVPD_					0	0	0		ENST00000548460.2_1_7:144532514-144532616:-|nuORF	ENST00000548460.2_1_7:144532514-144532616:-|nuORF	ENST00000548460.2_1_7:144532514-144532616:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.2452697753906	2	481.245472	960.476391	0.53291	0.00025646	-1.4003	-0.00067388	-0.86737	-0.00041742	481.24457698613503	18.658	0.34875	18.658	18.385	18.734	0					19	8	3	0	0	0	0.39566	1	5508	5508		56.721	1.9447	1	206000			48063	10597	31907	32038	48662	48662					-0.005428329272831434
VTSSVSTLK	9	Unmodified	_VTSSVSTLK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.2662048339844	2	461.266207	920.517862	0.09809	4.5246E-05	-0.51575	-0.0002379	-0.41766	-0.00019265	461.2660101247387	21.464	0.11928	21.464	21.414	21.533	0					7	5	2	0	0	0	0.41113	1	5922	5922		40.778	3.7497	1	81300			48064	7128	31908	32039	48663	48663					0.05442347832058658
VTSSVSTLK	9	Unmodified	_VTSSVSTLK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.26605224609375	2	461.266207	920.517862	0.77958	0.00035959	-1.2289	-0.00056686	-0.44935	-0.00020727	461.2656344979246	21.784	0.14268	21.784	21.738	21.881	0					8	3	3	0	0	0	0.026538	1	6990	6990		112.41	48.204	1	453450			48065	7128	31908	32039	48664	48664					0.05442347832058658
VTSSVSTLK	9	Unmodified	_VTSSVSTLK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.2662658691406	2	461.266207	920.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.512	1	21.512	21.012	22.012	0								0	0	0	0.25587	1	6189	6189		42.864	3.6114	1				48066	7128	31908	32039	48665	48665					0.05442347832058658
VTSSVSTLK	9	Unmodified	_VTSSVSTLK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2659606933594	2	461.266207	920.517862	-0.15044	-6.9391E-05	-0.60544	-0.00027927	-0.75588	-0.00034866	461.2659639918684	21.683	0.21638	21.683	21.625	21.842	0					6	4	2	0	0	0	0.15163	1	7239	7239		67.494	3.2864	1	212750			48067	7128	31908	32039	48666	48666					0.05442347832058658
VTSSVSTLK	9	Unmodified	_VTSSVSTLK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.26611328125	2	461.266207	920.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.574	1	21.574	21.074	22.074	0								0	0	0	0.19847	1	6279	6279		51.193	8.7182	1				48068	7128	31908	32039	48667	48667					0.05442347832058658
VTSSVSTLK	9	Unmodified	_VTSSVSTLK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.2658386230469	2	461.266207	920.517862	-0.46067	-0.00021249	-0.24574	-0.00011335	-0.70642	-0.00032585	461.26608128793634	21.696	0.16837	21.696	21.587	21.755	0					7	3	3	0	0	0	0.095583	1	7117	7117		80.455	32.797	1	437090			48069	7128	31908	32039	48668	48668					0.05442347832058658
VTSTDYLY	8	Unmodified	_VTSTDYLY_					0	0	0			REV__ENST00000342374.4_1_20:43128471-43128573:-|nuORF	REV__ENST00000342374.4_1_20:43128471-43128573:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	481.2724304199219	2	481.22929	960.444028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.417	1	37.417	36.917	37.917	0								0	0	0	1.7419	1	14633	14633		44.531	7.5026	1		+		48070	18459	31909	32040	48669	48669					-0.03777620330276932
VTSTESMDFLK	11	Unmodified	_VTSTESMDFLK_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	629.3050537109375	2	629.305203	1256.59585	1.2736	0.00080149	-0.7655	-0.00048174	0.50811	0.00031976	629.3048610642072	39.431	0.15135	39.431	39.333	39.484	0					11	5	3	0	0	0	0.27742	1	15010	15010		65.157	10.435	1	159370			48071	1603	31910	32041	48670	48670					-0.022180073648769394
VTSTFIIEK	9	Unmodified	_VTSTFIIEK_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2977905273438	2	519.297507	1036.58046	1.3879	0.00072071	-0.91108	-0.00047312	0.47677	0.00024759	519.2968964141447	34.001	0.42521	34.001	33.881	34.306	0					30	11	4	0	0	0	0.015496	1	12620	12620		129.42	24.675	1	2806600			48072	3480	31911	32042	48671	48671					0.06363493900221329
VTSTFIIEK	9	Unmodified	_VTSTFIIEK_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2976684570312	2	519.297507	1036.58046	1.6297	0.00084632	-0.75048	-0.00038972	0.87925	0.00045659	519.2969971657828	34.004	0.31949	34.004	33.865	34.185	0					23	7	4	0	0	0	0.032383	1	13053	13053		106.68	7.3081	1	3025800			48073	3480	31911	32042	48672	48672					0.06363493900221329
VTSTFIIEK	9	Unmodified	_VTSTFIIEK_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.29736328125	2	519.297507	1036.58046	0.98102	0.00050944	-0.4722	-0.00024521	0.50881	0.00026422	519.2972040083175	33.777	0.29227	33.777	33.679	33.972	0					21	8	3	0	0	0	0.047855	1	11871	11871		96.034	19.187	1	741380			48074	3480	31911	32042	48673	48673					0.06363493900221329
VTSTFIIEK	9	Unmodified	_VTSTFIIEK_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2979125976562	2	519.297507	1036.58046	0.29213	0.0001517	0.86267	0.00044798	1.1548	0.00059968	519.297942283424	33.965	0.3536	33.965	33.859	34.212	0					20	7	4	0	0	0	0.013878	1	12951	12951		132.76	15.854	1	2554200			48075	3480	31911	32042	48674	48674					0.06363493900221329
VTSTFIIEK	9	Unmodified	_VTSTFIIEK_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2976684570312	2	519.297507	1036.58046	1.6055	0.00083374	-0.66832	-0.00034706	0.9372	0.00048669	519.2970713902363	33.947	0.38292	33.947	33.767	34.15	0					23	6	5	0	0	0	0.037924	1	12947	12947		101.25	1.8777	1	4065500			48076	3480	31911	32042	48675	48675					0.06363493900221329
VTSVAMLPK	9	Oxidation (M)	_VTSVAM(Oxidation (M))LPK_		VTSVAM(1)LPK		VTSVAM(61)LPK	0	0	1			REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	481.2728576660156	2	481.272978	960.531403	0.040239	1.9366E-05	0.038084	1.8329E-05	0.078323	3.7695E-05	481.2731097028772	36.89	0.29308	36.89	36.762	37.055	0					33	15	3	0	0	0	0.20551	1	12061	12061		60.972	8.6728	1	146450	+		48077	17430	31912	32043	48676	48676		660			0.04955882339629625
VTSVFQASL	9	Unmodified	_VTSVFQASL_					0	0	0		nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF;CEP104|p.C757Vfs*24|1|0.47|ENSG00000116198|chr1:3825853-3825853|A/-|frameshift_variant;ENSG00000116198|ENST00000378230|CEP104	nc|ENSG00000116198|O60308-3|CEP104	nc|ENSG00000116198|O60308-3|CEP104	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.26080322265625	2	476.260925	950.507297	0.78326	0.00037304	-0.0513	-2.4432E-05	0.73196	0.0003486	476.26043454331926	28.783	0.61566	28.783	28.591	29.207	0					25	12	4	0	0	0	0.078509	1	10486	10486		85.161	1.5138	1	1167600			48078	475	31913	32044	48677	48677					0.030063651776117695
VTSYPSTKM	9	Unmodified	_VTSYPSTKM_					0	0	0		INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant;nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	INTS7|p.F796Sfs*34|1|0.34|ENSG00000143493|chr1:211946635-211946635|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.252197265625	2	507.252243	1012.48993	-0.088046	-4.4661E-05	-0.40766	-0.00020678	-0.4957	-0.00025145	507.25200762691264	38.091	0.19344	38.091	38.026	38.219	0					17	11	2	0	0	0	0.30951	1	12427	12427		49.442	0	1	65345			48079	4560	31914	32045	48678	48678					-0.01581298419682753
VTTAFVAGK	9	Unmodified	_VTTAFVAGK_					0	0	0		ENST00000321521.13_1_5:102456077-102465065:+|nuORF	ENST00000321521.13_1_5:102456077-102465065:+|nuORF	ENST00000321521.13_1_5:102456077-102465065:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.2578430175781	2	447.258185	892.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.916	1	25.916	25.416	26.416	0								0	0	0	0.099216	1	8874	8874		71.877	25.926	1				48080	8616	31915	32046	48679	48679					0.05126686385813173
VTTCTVTCGL	10	Unmodified	_VTTCTVTCGL_					0	0	0		TMEM81|p.A46V|1|0.09|ENSG00000174529|chr1:205084184-205084184|G/A|missense_variant	TMEM81|p.A46V|1|0.09|ENSG00000174529|chr1:205084184-205084184|G/A|missense_variant	TMEM81|p.A46V|1|0.09|ENSG00000174529|chr1:205084184-205084184|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2378234863281	2	499.238278	996.462003	-0.73505	-0.00036696	0.62484	0.00031194	-0.11021	-5.5021E-05	499.23868315766936	34.889	0.16321	34.889	34.784	34.947	0					6	3	2	0	0	0	0.60076	1	13432	13432		34.173	0	1	109710			48081	22548	31916	32047	48680	48680					-0.036369446714275
VTTETITVTL	10	Unmodified	_VTTETITVTL_					0	0	0			REV__ENSG00000189339|ENST00000617444|SLC35E2B	REV__ENSG00000189339|ENST00000617444|SLC35E2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	539.3026123046875	2	539.305529	1076.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.85	1	15.85	15.35	16.35	0								0	0	0	0.3428	1	3634	3634		44.117	1.2525	1		+		48082	17219	31917	32048	48681	48681					0.061271553464848694
VTTFQIALS	9	Unmodified	_VTTFQIALS_					0	0	0			REV__CFAP54|p.N1771T|1|0.27|ENSG00000188596|chr12:96658093-96658093|A/C|missense_variant	REV__CFAP54|p.N1771T|1|0.27|ENSG00000188596|chr12:96658093-96658093|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.27587890625	2	490.276575	978.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.383	1	35.383	34.883	35.883	0								0	0	0	0.21054	1	12601	12601		49.442	0	1		+		48083	12441	31918	32049	48682	48682					0.04846938211710494
VTTGGMVLK	9	Unmodified	_VTTGGMVLK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.2596130371094	2	453.259871	904.505189	-0.0082854	-3.7554E-06	0.38233	0.0001733	0.37405	0.00016954	453.26003232974074	27.262	0.23113	27.262	27.18	27.411	0					19	9	3	0	0	0	0.24095	1	8369	8369		56.721	5.3856	1	217270			48084	6424	31919	32050	48683	48683					0.049116131681671504
VTTGGMVLK	9	Unmodified	_VTTGGMVLK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2596435546875	2	453.259871	904.505189	0.69164	0.00031349	-1.3142	-0.00059567	-0.62255	-0.00028218	453.25935643828484	27.547	0.34307	27.547	27.419	27.762	0					20	8	4	0	0	0	0.032052	1	9625	9625		107.01	13.001	1	2298500			48085	6424	31919	32050	48684	48684					0.049116131681671504
VTTGGMVLK	9	Unmodified	_VTTGGMVLK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.2596435546875	2	453.259871	904.505189	-0.54078	-0.00024511	-0.31987	-0.00014499	-0.86065	-0.0003901	453.25983744636795	27.538	0.29869	27.538	27.407	27.706	0					19	7	4	0	0	0	0.032052	1	9618	9618		107.01	16.231	1	2050600			48086	6424	31919	32050	48685	48685					0.049116131681671504
VTTGGMVLK	9	Unmodified	_VTTGGMVLK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.259765625	2	453.259871	904.505189	-1.1967	-0.00054241	0.58991	0.00026738	-0.60678	-0.00027503	453.2601497749059	27.275	0.22268	27.275	27.196	27.418	0					22	8	4	0	0	0	0.53064	1	8656	8656		29.17	0.020503	1	590970			48087	6424	31919	32050	48686	48686					0.049116131681671504
VTTGGMVLK	9	Unmodified	_VTTGGMVLK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.25958251953125	2	453.259871	904.505189	0.72105	0.00032682	-1.5548	-0.00070472	-0.83374	-0.0003779	453.25926559577664	27.515	0.35927	27.515	27.405	27.764	0					19	7	4	0	0	0	0.014688	1	9986	9986		131.03	34.841	1	3272400			48088	6424	31919	32050	48687	48687					0.049116131681671504
VTTGGMVLK	9	Unmodified	_VTTGGMVLK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2600402832031	2	453.259871	904.505189	-2.6207	-0.0011878	2.0362	0.00092294	-0.58443	-0.0002649	453.2608698436321	27.329	0.21863	27.329	27.235	27.454	0					14	5	4	0	0	0	0.1424	1	8914	8914		69.628	16.276	1	744680			48089	6424	31919	32050	48688	48688					0.049116131681671504
VTTGGMVLK	9	Unmodified	_VTTGGMVLK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.25958251953125	2	453.259871	904.505189	0.87742	0.0003977	-1.8328	-0.00083073	-0.95536	-0.00043303	453.25917141348776	27.45	0.37166	27.45	27.34	27.712	0					16	7	4	0	0	0	0.0406	1	9835	9835		98.629	4.623	1	2573900			48090	6424	31919	32050	48689	48689					0.049116131681671504
VTTGPPPTGA	10	Unmodified	_VTTGPPPTGA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	449.2371826171875	2	449.23745	896.460347	-0.39647	-0.00017811	-0.18789	-8.4409E-05	-0.58436	-0.00026252	449.23742557845065	20.103	0.31627	20.103	19.995	20.311	0					12	6	3	0	0	0	0.14393	1	6339	6339		87.754	8.3033	1	992100	+		48091	16110	31920	32051	48690	48690					0.007975056264740488
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7851257324219	2	502.784764	1003.55498	0.54376	0.00027339	-0.1788	-8.9899E-05	0.36496	0.00018349	502.7846772538598	27.213	0.2577	27.213	27.125	27.383	0					24	10	3	0	0	0	0.16745	1	8356	8356		83.647	10.768	1	575780			48092	3954	31921	32052	48691	48691					0.05334019377812638
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.78472900390625	2	502.784764	1003.55498	0.72499	0.00036451	-0.89157	-0.00044827	-0.16658	-8.3753E-05	502.78425386331395	27.467	0.46647	27.467	27.378	27.845	0					25	11	3	0	0	0	0.0090663	1	9605	9605		146.79	39.778	1	3689800			48093	3954	31921	32052	48692	48692					0.05334019377812638
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.784912109375	2	502.784764	1003.55498	-0.89974	-0.00045237	-0.70306	-0.00035349	-1.6028	-0.00080586	502.7842738150159	27.248	0.43059	27.248	27.131	27.561	0					34	15	3	0	0	0	0.36647	1	8648	8648		59.931	1.7009	1	476650			48094	3954	31921	32052	48693	48693					0.05334019377812638
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7844543457031	2	502.784764	1003.55498	0.98754	0.00049652	-3.5719	-0.0017959	-2.5843	-0.0012994	502.78293598973676	27.464	0.55925	27.464	27.355	27.915	0					21	11	2	0	0	0	0.00017198	1	9962	9962		190.62	45.467	1	3099200			48095	3954	31921	32052	48694	48694					0.05334019377812638
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7844543457031	2	502.784764	1003.55498	-0.2056	-0.00010337	-0.22309	-0.00011217	-0.42869	-0.00021554	502.7846070764366	27.296	0.14277	27.296	27.219	27.361	0					8	3	3	0	0	0	0.08194	1	8909	8909		98.582	16.277	1	221330			48096	3954	31921	32052	48695	48695					0.05334019377812638
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.78515625	2	502.784764	1003.55498	0.13343	6.7084E-05	0.1041	5.234E-05	0.23753	0.00011942	502.78475287922066	27.301	0.18016	27.301	27.208	27.388	0					13	4	4	0	0	0	0.018513	1	8900	8900		126.24	27.613	1	885340			48097	3954	31921	32052	48696	48696					0.05334019377812638
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7845764160156	2	502.784764	1003.55498	-0.48365	-0.00024317	0.14861	7.4719E-05	-0.33504	-0.00016845	502.78489375622917	27.416	0.32177	27.416	27.306	27.628	0					16	6	4	0	0	0	0.0098546	1	9820	9820		143.37	19.294	1	2287100			48098	3954	31921	32052	48697	48697					0.05334019377812638
VTTGSEGLLK	10	Unmodified	_VTTGSEGLLK_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7846984863281	2	502.784764	1003.55498	1.1608	0.00058364	-2.8751	-0.0014455	-1.7142	-0.0008619	502.7833097521909	27.45	0.4229	27.45	27.289	27.712	0					19	8	3	0	0	0	0.0054485	1	9811	9811		164.46	43.587	1	4663300			48099	3954	31921	32052	48698	48698					0.05334019377812638
VTTISAGLIY	10	Unmodified	_VTTISAGLIY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2969970703125	2	519.297507	1036.58046	1.6233	0.00084295	-0.45821	-0.00023795	1.165	0.00060501	519.2971171361081	41.238	0.24157	41.238	41.128	41.369	0					18	10	2	0	0	0	0.39566	1	16230	16230		56.721	8.8055	1	130580			48100	5134;11594	31922	32053	48699	48699					0.06363493900244066
VTTKIFDK	8	Unmodified	_VTTKIFDK_					0	0	0			REV__nc|ENSG00000124795|P35659-2|DEK	REV__nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2784423828125	2	476.279118	950.543683	-0.381	-0.00018146	-0.38827	-0.00018493	-0.76927	-0.00036639	476.27883465190297	25.661	0.171	25.661	25.573	25.744	0					9	4	3	0	0	0	0.67836	1	8825	8825		36.447	7.2972	1	264750	+		48101	12693	31923	32054	48700	48700					0.06643242074335376
VTTKPDKGAL	10	Unmodified	_VTTKPDKGAL_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.3004150390625	2	515.300581	1028.58661	1.5016	0.00077376	-1.2374	-0.00063764	0.26416	0.00013612	515.2998793499067	40.674	0.18451	40.674	40.578	40.762	0					9	4	3	0	0	0	0.20981	1	16152	16152		78.264	4.0087	1	161470	+		48102	15630	31924	32055	48701	48701					0.07346012131756652
VTTKQTQKIS	10	Unmodified	_VTTKQTQKIS_					0	0	0		FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant;FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant;FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant;FRMPD4|p.S1105Vfs*3|1|0.29|ENSG00000169933|chrX:12718134-12718134|A/-|frameshift_variant;FRMPD4|p.L1210Pfs*39|1|0.05|ENSG00000169933|chrX:12718454-12718455|-/CT|frameshift_variant;nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4	FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant	FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3314819335938	2	567.32987	1132.64519	1.6758	0.00095072	0.80408	0.00045618	2.4799	0.0014069	567.330387224952	52.268	0.81494	52.268	51.945	52.76	0					73	49	2	0	0	0	0.72769	1	20347	20347		17.468	17.468	1	86092			48103	6198	31925	32056	48702	48702					0.08417068706239661
VTTLKTVLDQQ	11	Unmodified	_VTTLKTVLDQQ_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	623.3573608398438	2	623.356085	1244.69762	-2.1034	-0.0013112	2.2947	0.0014304	0.19126	0.00011923	623.8584517718315	35.186	0.14442	35.186	35.105	35.249	0					6	4	2	0	0	0	0.42065	1	12511	12511		50.034	0.49747	1	71164			48104	4228	31926	32057	48703	48703					0.08505607049187347
VTTLPHNVM	9	Oxidation (M)	_VTTLPHNVM(Oxidation (M))_		VTTLPHNVM(1)		VTTLPHNVM(51)	0	0	1		NCSTN|p.R323H|1|0.43|ENSG00000162736|chr1:160352178-160352178|G/A|missense_variant	NCSTN|p.R323H|1|0.43|ENSG00000162736|chr1:160352178-160352178|G/A|missense_variant	NCSTN|p.R323H|1|0.43|ENSG00000162736|chr1:160352178-160352178|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.7676391601562	2	514.265684	1026.51682	0.61882	0.00031824	-0.11144	-5.7312E-05	0.50738	0.00026093	514.2656237170188	20.092	0.1313	20.092	20.01	20.141	0					5	3	2	0	0	0	0.2873	1	5596	5596		51.335	8.4712	1	162670			48105	11847	31927	32058	48704	48704		463			0.004618101914957151
VTTPFPALPQ	10	Unmodified	_VTTPFPALPQ_					0	0	0		ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA	ENSG00000063169|ENST00000594866|BICRA	ENSG00000063169|ENST00000594866|BICRA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.7987670898438	2	535.797675	1069.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.35	1	44.35	43.85	44.85	0								0	0	0	0.4162	1	17767	17767		25.574	3.6142	1				48106	1337	31928	32059	48705	48705					0.04878913620086678
VTTPPPLV	8	Unmodified	_VTTPPPLV_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A;GATAD2A|p.R273Gfs*42|1|0.27|ENSG00000167491|chr19:19496107-19496107|C/-|frameshift_variant;GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	412.2496032714844	2	412.249829	822.485105	0.63889	0.00026338	-1.0801	-0.00044528	-0.44124	-0.0001819	412.2493195747181	31.385	0.15697	31.385	31.316	31.473	0					9	6	2	0	0	0	0.70055	1	10100	10100		33.516	1.9367	1	78681			48107	5993	31929	32060	48706	48706					0.06676185499850362
VTTPPPLV	8	Unmodified	_VTTPPPLV_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A;GATAD2A|p.R273Gfs*42|1|0.27|ENSG00000167491|chr19:19496107-19496107|C/-|frameshift_variant;GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	412.2496643066406	2	412.249829	822.485105	1.0182	0.00041974	-0.69544	-0.0002867	0.32274	0.00013305	412.24945950691034	31.698	0.2579	31.698	31.613	31.871	0					12	6	3	0	0	0	0.49887	1	11561	11561		60.294	25.093	1	418840			48108	5993	31929	32060	48707	48707					0.06676185499850362
VTTPPPLV	8	Unmodified	_VTTPPPLV_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A;GATAD2A|p.R273Gfs*42|1|0.27|ENSG00000167491|chr19:19496107-19496107|C/-|frameshift_variant;GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.2498779296875	2	412.249829	822.485105	-0.43896	-0.00018096	0.71737	0.00029573	0.27841	0.00011477	412.25001991707285	31.625	0.26436	31.625	31.521	31.786	0					8	5	2	0	0	0	0.68754	1	11855	11855		35.201	1.6851	1	317880			48109	5993	31929	32060	48708	48708					0.06676185499850362
VTTPPPLV	8	Unmodified	_VTTPPPLV_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A;GATAD2A|p.R273Gfs*42|1|0.27|ENSG00000167491|chr19:19496107-19496107|C/-|frameshift_variant;GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.2496032714844	2	412.249829	822.485105	0.90892	0.0003747	-1.5494	-0.00063874	-0.64049	-0.00026404	412.249168002222	31.658	0.26318	31.658	31.505	31.768	0					9	5	2	0	0	0	0.59411	1	11871	11871		50.025	5.4935	1	534520			48110	5993	31929	32060	48709	48709					0.06676185499850362
VTTPQAVSV	9	Unmodified	_VTTPQAVSV_					0	0	0		ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2528381347656	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.622	1	26.622	26.122	27.122	0								0	0	0	0.080575	1	8598	8598		77.318	0	1				48111	1909	31930	32061	48710	48710					0.03742078660570769
VTTQTKPL	8	Unmodified	_VTTQTKPL_					0	0	0			REV__CFHR3|p.A123T|1|0.36|ENSG00000116785|chr1:196779910-196779910|G/A|missense_variant	REV__CFHR3|p.A123T|1|0.36|ENSG00000116785|chr1:196779910-196779910|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	444.2630615234375	2	444.263468	886.512382	-1.1582	-0.00051455	-0.30331	-0.00013475	-1.4615	-0.0006493	444.2632833026026	27.471	0.14765	27.471	27.383	27.531	0					7	5	2	0	0	0	0.51384	1	8775	8775		58.782	4.0056	1	59847	+		48112	12447	31931	32062	48711	48711					0.06458669040239329
VTTQTKPL	8	Unmodified	_VTTQTKPL_					0	0	0			REV__CFHR3|p.A123T|1|0.36|ENSG00000116785|chr1:196779910-196779910|G/A|missense_variant	REV__CFHR3|p.A123T|1|0.36|ENSG00000116785|chr1:196779910-196779910|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	444.2631530761719	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.575	1	34.575	34.075	35.075	0								0	0	0	1.7419	1	13265	13265		51.335	7.2187	1		+		48113	12447	31931	32062	48712	48712					0.06458669040239329
VTTREVVV	8	Unmodified	_VTTREVVV_					0	0	0		ENST00000429118.1_1_9:94374035-94374428:+|nuORF	ENST00000429118.1_1_9:94374035-94374428:+|nuORF	ENST00000429118.1_1_9:94374035-94374428:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.769287109375	2	451.768917	901.523281	-0.10232	-4.6225E-05	-0.7908	-0.00035726	-0.89312	-0.00040348	451.7685937003831	33.864	0.12949	33.864	33.807	33.936	0					5	3	2	0	0	0	0.76283	1	11960	11960		25.45	0.93098	1	67321			48114	9471	31932	32063	48713	48713					0.06858071414524147
VTTRNLGTDS	10	Unmodified	_VTTRNLGTDS_					0	0	0			REV__ENSG00000105388|ENST00000221992|CEACAM5	REV__ENSG00000105388|ENST00000221992|CEACAM5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.271240234375	2	532.272552	1062.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.593	1	32.593	32.093	33.093	0								0	0	0	0.38475	1	11351	11351		35.152	3.6222	1		+		48115	13773	31933	32064	48714	48714					0.0017875922428629565
VTTSDVISK	9	Unmodified	_VTTSDVISK_					0	0	0		CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant;CEP152|p.E966Ffs*23|1|0.03|ENSG00000103995|chr15:48756352-48756353|-/AGAAGGAGACAGAA|frameshift_variant;nc|ENSG00000103995|O94986-1|CEP152;CEP152|p.I1277Lfs*20|1|0.2|ENSG00000103995|chr15:48744246-48744246|T/-|frameshift_variant;nc|ENSG00000103995|O94986-2|CEP152;CEP152|p.E1488Ifs*9|1|0.07|ENSG00000103995|chr15:48738920-48738921|-/TAATGAAAGACTTGGTTTAAAAGTAT|frameshift_variant;nc|ENSG00000103995|O94986-3|CEP152;CEP152|p.L1674Tfs*23|1|0.09|ENSG00000103995|chr15:48738362-48738363|-/T|frameshift_variant;ENSG00000103995|ENST00000380950|CEP152	CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant	CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2634582519531	2	475.263665	948.512776	-0.11992	-5.6994E-05	-0.30778	-0.00014628	-0.4277	-0.00020327	475.26361095004535	22.576	0.21051	22.576	22.417	22.628	0					7	4	2	0	0	0	0.39215	1	7674	7674		42.396	3.1433	1	274610			48116	479	31934	32065	48715	48715					0.03646043969445145
VTTSFGVAL	9	Unmodified	_VTTSFGVAL_					0	0	0			REV__ENSG00000021645|ENST00000335750|NRXN3	REV__ENSG00000021645|ENST00000335750|NRXN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	447.75018310546875	2	447.750193	893.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.761	1	34.761	34.261	35.261	0								0	0	0	0.27166	1	11736	11736		40.573	0	1		+		48117	12938	31935	32066	48716	48716					0.03482980148908155
VTTSFRLLA	9	Unmodified	_VTTSFRLLA_					0	0	0			REV__ENST00000508736.1_1_12:49994556-49994850:+|nuORF	REV__ENST00000508736.1_1_12:49994556-49994850:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.53399658203125	3	336.53432	1006.58113	0.24139	8.1237E-05	-0.29751	-0.00010012	-0.056117	-1.8885E-05	336.53399619874165	37.806	0.49154	37.806	37.49	37.982	0					38	28	2	0	0	0	0.61124	1	12357	12357		14.865	6.1712	1	104780	+		48118	19853	31936	32067	48717	48717					0.07810333339944009
VTTSTTPP	8	Unmodified	_VTTSTTPP_					0	0	0			REV__nc|ENSG00000102145|P15976-3|GATA1	REV__nc|ENSG00000102145|P15976-3|GATA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	402.2107238769531	2	402.210901	802.407249	3.4555	0.0013898	-3.8623	-0.0015535	-0.40678	-0.00016361	402.2095875613896	21.201	0.13583	21.201	21.168	21.304	0					5	4	2	0	0	0	0.75243	1	6059	6059		26.796	6.3143	1	48698	+		48119	13626	31937	32068	48718	48718					-0.0018587215619163544
VTTTSQARELR	11	Unmodified	_VTTTSQARELR_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	631.3468627929688	2	631.346583	1260.67861	0.19593	0.0001237	1.1968	0.0007556	1.3927	0.0008793	631.3472266331746	22.506	0.10031	22.506	22.46	22.561	0					5	3	2	0	0	0	0.74306	1	6377	6377		23.523	1.5628	1	55496			48120	3651	31938	32069	48719	48719					0.05870070478135858
VTTTTTTVTK	10	Unmodified	_VTTTTTTVTK_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7967529296875	2	526.795329	1051.5761	1.7613	0.00092785	0.84621	0.00044578	2.6075	0.0013736	526.7956980048607	31.39	0.22853	31.39	31.296	31.524	0					10	5	3	0	0	0	0.36476	1	11845	11845		60.118	17.644	1	632060			48121	314	31939	32070	48720	48720					0.052379846866642765
VTTVGPQL	8	Unmodified	_VTTVGPQL_					0	0	0			REV__ENSG00000184985|ENST00000507866|SORCS2	REV__ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	407.7369384765625	2	407.737086	813.459619	0.73953	0.00030153	-0.75825	-0.00030917	-0.01872	-7.6329E-06	407.73668835951156	30.562	0.4535	30.562	30.277	30.731	0					22	9	3	0	0	0	0.30437	1	11280	11280		82.305	0.064519	1	829620	+		48122	17001	31940	32071	48721	48721					0.04542710977432307
VTTVILMMI	9	2 Oxidation (M)	_VTTVILM(Oxidation (M))M(Oxidation (M))I_		VTTVILM(1)M(1)I		VTTVILM(48)M(48)I	0	0	2			REV__ENST00000468398.1_1_3:149047933-149051100:-|nuORF	REV__ENST00000468398.1_1_3:149047933-149051100:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.792236328125	2	526.790146	1051.56574	3.4662	0.0018259	0.62554	0.00032953	4.0917	0.0021555	526.7902237754423	45.723	0.25383	45.723	45.613	45.867	0					16	10	2	0	0	0	0.32741	1	18300	18300		47.916	13.743	1	148510	+		48123	15917	31941	32072	48722	48722		608;609			0.04201962436263784
VTTVSQPL	8	Unmodified	_VTTVSQPL_					0	0	0			REV__PRPF8|p.R1163Q|1|0.21|ENSG00000174231|chr17:1673526-1673526|C/T|missense_variant	REV__PRPF8|p.R1163Q|1|0.21|ENSG00000174231|chr17:1673526-1673526|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	422.74212646484375	2	422.742368	843.470183	0.99291	0.00041974	-1.3616	-0.0005756	-0.36868	-0.00015586	422.7418000145115	27.969	0.17517	27.969	27.879	28.054	0					6	4	2	0	0	0	0.41701	1	9848	9848		68.787	7.8149	1	181110	+		48124	21418	31942	32073	48723	48723					0.04218693631867154
VTTVTISLAN	10	Unmodified	_VTTVTISLAN_					0	0	0		DNAH9|p.A3342T|1|0.19|ENSG00000007174|chr17:11869224-11869224|G/A|missense_variant	DNAH9|p.A3342T|1|0.19|ENSG00000007174|chr17:11869224-11869224|G/A|missense_variant	DNAH9|p.A3342T|1|0.19|ENSG00000007174|chr17:11869224-11869224|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2977600097656	2	509.792589	1017.57063	0.24121	0.00012297	1.5379	0.00078402	1.7791	0.00090699	509.7933175197907	24.392	0.53561	24.392	24.124	24.66	0					26	12	3	0	0	0	0.65213	1	7708	7708		27.882	1.0861	1	379610			48125	822	31943	32074	48724	48724					0.06254305894856316
VTVAAETVLA	10	Unmodified	_VTVAAETVLA_					0	0	0		ENST00000360415.7_1_7:65617938-65618154:+|nuORF	ENST00000360415.7_1_7:65617938-65618154:+|nuORF	ENST00000360415.7_1_7:65617938-65618154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2813415527344	2	487.281857	972.549162	0.63165	0.00030779	-2.1088	-0.0010276	-1.4772	-0.00071981	487.2803284414338	33.439	0.6686	33.439	33.138	33.807	0					27	16	3	0	0	0	0.39566	1	12790	12790		56.721	5.3856	1	670220			48126	8864	31944	32075	48725	48725					0.06178920866113913
VTVAAETVLAA	11	Unmodified	_VTVAAETVLAA_					0	0	0		ENST00000360415.7_1_7:65617938-65618154:+|nuORF	ENST00000360415.7_1_7:65617938-65618154:+|nuORF	ENST00000360415.7_1_7:65617938-65618154:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.8003540039062	2	522.800414	1043.58628	1.797	0.00093947	-2.0748	-0.0010847	-0.27781	-0.00014524	522.7991410258983	35.356	0.40115	35.356	35.064	35.466	0					23	11	3	0	0	0	0.17474	1	13691	13691		77.318	13.784	1	551600			48127	8864	31945	32076	48726	48726					0.06622592411872574
VTVADHIQK	9	Unmodified	_VTVADHIQK_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.7854309082031	2	505.785099	1009.55564	-0.075037	-3.7952E-05	-0.75217	-0.00038043	-0.8272	-0.00041839	505.7852615397134	20.387	0.19279	20.387	20.267	20.459	0					8	6	2	0	0	0	0.02953	1	5449	5449		109.48	40.692	1	122670			48128	6864	31946	32077	48727	48727					0.05124858817521272
VTVADHIQK	9	Unmodified	_VTVADHIQK_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.78515625	2	505.785099	1009.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.713	1	20.713	20.213	21.213	0								0	0	0	0.018912	1	6471	6471		101.25	24.478	1				48129	6864	31946	32077	48728	48728					0.05124858817521272
VTVADHIQK	9	Unmodified	_VTVADHIQK_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7855224609375	2	505.785099	1009.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.643	1	20.643	20.143	21.143	0								0	0	0	0.080575	1	6590	6590		77.318	7.69	1				48130	6864	31946	32077	48729	48729					0.05124858817521272
VTVDAQLLL	9	Unmodified	_VTVDAQLLL_					0	0	0		ENST00000468882.1_1_10:15655657-15686119:-|nuORF;ENSG00000077943|ENST00000378076|ITGA8	ENST00000468882.1_1_10:15655657-15686119:-|nuORF	ENST00000468882.1_1_10:15655657-15686119:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2921447753906	2	486.292225	970.569897	0.012272	5.9676E-06	-0.22063	-0.00010729	-0.20836	-0.00010132	486.29208979854985	40.651	0.25135	40.651	40.563	40.814	0					31	15	3	0	0	0	0.13519	1	13105	13105		71.296	2.5089	1	240670			48131	1592	31947	32078	48730	48730					0.08343511245811897
VTVDGHLIRK	10	Unmodified	_VTVDGHLIRK_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;ENSG00000107521|ENST00000361490|HPS1;ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF;nc|ENSG00000289758|Q92902-3|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.3407592773438	2	569.340572	1136.66659	1.1437	0.00065117	-0.56282	-0.00032043	0.5809	0.00033073	569.3401532367714	19.602	0.084087	19.602	19.552	19.636	0					4	2	2	0	0	0	0.56063	1	5107	5107		34.173	7.4796	1	121180			48132	2483	31948	32079	48731	48731					0.10372498525612173
VTVDGHLIRK	10	Unmodified	_VTVDGHLIRK_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;ENSG00000107521|ENST00000361490|HPS1;ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF;nc|ENSG00000289758|Q92902-3|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.8962097167969	3	379.89614	1136.66659	0.65621	0.00024929	-1.4095	-0.00053545	-0.75325	-0.00028616	379.89574570544147	23.175	0.31676	23.175	23.069	23.385	0					11	6	2	0	0	0	0.61238	1	7830	7830		32.751	2.1817	1	956440			48133	2483	31948	32079	48732	48732					0.10372498525612173
VTVDPKYHPK	10	Unmodified	_VTVDPKYHPK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	395.2203674316406	3	395.220513	1182.63971	-0.23461	-9.2724E-05	0.17862	7.0596E-05	-0.055989	-2.2128E-05	395.220576695388	19.743	0.26878	19.743	19.554	19.823	0					18	6	3	0	0	0	0.536	1	5999	5999		41.427	6.2484	1	842930			48134	2930	31949	32080	48733	48733					0.05569389914421663
VTVDPKYHPK	10	Unmodified	_VTVDPKYHPK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	395.2206115722656	3	395.220513	1182.63971	0.42796	0.00016914	-0.20137	-7.9586E-05	0.22659	8.9552E-05	395.22043134478207	19.584	0.31317	19.584	19.396	19.71	0					17	6	4	0	0	0	0.46128	1	6191	6191		49.536	7.198	1	1162800			48135	2930	31949	32080	48734	48734					0.05569389914421663
VTVEALVEDA	10	Unmodified	_VTVEALVEDA_					0	0	0			REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2750854492188	2	523.274229	1044.53391	-0.00083075	-4.3471E-07	0.44294	0.00023178	0.44211	0.00023135	523.2744186410858	36.239	0.60801	36.239	36.068	36.676	0					48	17	4	0	0	0	0.60076	1	14045	14045		34.173	5.023	1	10369000	+		48136	12729	31950	32081	48735	48735					0.013420092782780557
VTVEDGSFLT	10	Unmodified	_VTVEDGSFLT_					0	0	0			REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.26513671875	2	534.266404	1066.51826	-0.53091	-0.00028365	-0.72532	-0.00038751	-1.2562	-0.00067116	534.2658519869769	36.065	0.21907	36.065	35.944	36.163	0					11	9	2	0	0	0	0.55603	1	12210	12210		39.253	2.0937	1	50227	+		48137	22085	31951	32082	48736	48736					-0.012342772387455625
VTVEVGRLV	9	Unmodified	_VTVEVGRLV_					0	0	0			REV__nc|ENSG00000160221|P0DPI2-2|GATD3	REV__nc|ENSG00000160221|P0DPI2-2|GATD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.2971496582031	2	486.297842	970.581131	-2.913	-0.0014166	2.917	0.0014185	0.0039663	1.9288E-06	486.29922049234995	37.441	0.16649	37.441	37.402	37.568	0					12	8	2	0	0	0	0.2873	1	13401	13401		51.335	5.3632	1	97782	+		48138	15742	31952	32083	48737	48737					0.09466333339946686
VTVEVVGKGK	10	Unmodified	_VTVEVVGKGK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;ENST00000527416.2_1_14:95555309-95557645:-|nuORF	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.3108215332031	2	508.310949	1014.60735	-0.097689	-4.9656E-05	-0.057578	-2.9268E-05	-0.15527	-7.8924E-05	508.31080569913706	20.876	0.094404	20.876	20.825	20.92	0					5	3	2	0	0	0	0.50639	1	5665	5665		40.058	11.977	1	102360			48139	2057	31953	32084	48738	48738					0.1006260251143658
VTVEVVGKGK	10	Unmodified	_VTVEVVGKGK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;ENST00000527416.2_1_14:95555309-95557645:-|nuORF	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.31072998046875	2	508.310949	1014.60735	-0.025478	-1.2951E-05	0.51255	0.00026054	0.48707	0.00024759	508.3111336968	21.21	0.23078	21.21	21.08	21.311	0					12	5	3	0	0	0	0.039549	1	6698	6698		101.46	32.614	1	659480			48140	2057	31953	32084	48739	48739					0.1006260251143658
VTVEVVGKGK	10	Unmodified	_VTVEVVGKGK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;ENST00000527416.2_1_14:95555309-95557645:-|nuORF	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.8124084472656	2	508.310949	1014.60735	-0.47256	-0.00024021	0.73975	0.00037602	0.26719	0.00013582	508.31145228449867	20.91	0.07225	20.91	20.854	20.927	0					4	2	2	0	0	0	0.34979	1	5912	5912		58.23	30.348	1	83619			48141	2057	31953	32084	48740	48740					0.1006260251143658
VTVFPFNI	8	Unmodified	_VTVFPFNI_					0	0	0		nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	nc|ENSG00000133027|Q9UBM1|PEMT	nc|ENSG00000133027|Q9UBM1|PEMT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.76470947265625	2	468.763104	935.511654	2.596	0.0012169	0.37221	0.00017448	2.9683	0.0013914	468.76337475214984	43.415	0.22803	43.415	43.323	43.551	0					17	8	3	0	0	0	0.54629	1	17374	17374		55.504	0	1	194870			48142	3830	31954	32085	48741	48741					0.04131874391191559
VTVGETKLI	9	Unmodified	_VTVGETKLI_					0	0	0			REV__nc|ENSG00000171766|P50440-3|GATM	REV__nc|ENSG00000171766|P50440-3|GATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	480.2928466796875	2	480.292225	958.569897	0.50033	0.00024031	-1.0371	-0.00049811	-0.53675	-0.0002578	480.29175153722383	38.012	0.34482	38.012	37.818	38.162	0					30	15	3	0	0	0	0.10915	1	14421	14421		77.318	5.4401	1	888560	+		48143	16429	31955	32086	48742	48742					0.08895511245816579
VTVGETKLI	9	Unmodified	_VTVGETKLI_					0	0	0			REV__nc|ENSG00000171766|P50440-3|GATM	REV__nc|ENSG00000171766|P50440-3|GATM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.2919921875	2	480.292225	958.569897	0.67478	0.00032409	-0.34601	-0.00016619	0.32877	0.0001579	480.2919584031539	37.961	0.39113	37.961	37.81	38.201	0					36	13	4	0	0	0	0.15163	1	14866	14866		67.494	2.0283	1	1276600	+		48144	16429	31955	32086	48743	48743					0.08895511245816579
VTVGVDGTLYK	11	Unmodified	_VTVGVDGTLYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF;nc|ENSG00000156515|P19367-2|HK1;nc|ENSG00000156515|P19367-4|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.3195190429688	2	576.318971	1150.62339	-0.085925	-4.952E-05	0.592	0.00034118	0.50608	0.00029166	576.3193265216121	34.876	0.2323	34.876	34.761	34.993	0					14	6	3	0	0	0	0.07149	1	13022	13022		96.665	36.547	1	270530			48145	11597;5314	31956	32087	48744	48744					0.05410263957674033
VTVGVDGTLYK	11	Unmodified	_VTVGVDGTLYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF;nc|ENSG00000156515|P19367-2|HK1;nc|ENSG00000156515|P19367-4|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156515|P19367-2|HK1	nc|ENSG00000156515|P19367-2|HK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.3187866210938	2	576.318971	1150.62339	0.040101	2.3111E-05	0.55472	0.0003197	0.59482	0.00034281	576.3191020300912	34.699	0.11395	34.699	34.635	34.749	0					8	5	2	0	0	0	0.52595	1	11703	11703		42.338	2.2799	1	112230			48146	11597;5314	31956	32087	48745	48745					0.05410263957674033
VTVKFGHTQ	9	Unmodified	_VTVKFGHTQ_					0	0	0		LYSMD1|p.V109Yfs*68|1|0.37|ENSG00000163155|chr1:151161957-151161957|T/-|frameshift_variant	LYSMD1|p.V109Yfs*68|1|0.37|ENSG00000163155|chr1:151161957-151161957|T/-|frameshift_variant	LYSMD1|p.V109Yfs*68|1|0.37|ENSG00000163155|chr1:151161957-151161957|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.7802734375	2	508.779816	1015.54508	1.0288	0.00052345	-0.992	-0.00050471	0.036826	1.8736E-05	508.7792707901812	27.771	0.35719	27.771	27.636	27.993	0					13	8	2	0	0	0	0.33044	1	9794	9794		47.657	0	1	413420			48147	11342	31957	32088	48746	48746					0.03792876163083747
VTVLAGSLT	9	Unmodified	_VTVLAGSLT_					0	0	0			REV__nc|ENSG00000176945|Q8N307-3|MUC20	REV__nc|ENSG00000176945|Q8N307-3|MUC20	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	430.7582702636719	2	430.758018	859.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.966	1	42.966	42.466	43.466	0								0	0	0	0.29774	1	17175	17175		35.618	5.1146	1		+		48148	16680	31958	32089	48747	48747					0.06611266665947824
VTVLCSDIH	9	Unmodified	_VTVLCSDIH_					0	0	0			REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.752197265625	2	493.75241	985.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.555	1	11.555	11.055	12.055	0								0	0	0	0.37821	1	2263	2263		17.365	4.4058	1		+		48149	21001	31959	32090	48748	48748					-0.0030587869983946803
VTVLPFGKQ	9	Unmodified	_VTVLPFGKQ_					0	0	0			REV__ENST00000473914.1_1_5:96332105-96341995:+|nuORF	REV__ENST00000473914.1_1_5:96332105-96341995:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.7962341308594	2	494.794935	987.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.325	1	38.325	37.825	38.825	0								0	0	0	0.069826	1	14556	14556		64.207	7.4862	1		+		48150	14041	31960	32091	48749	48749					0.08103234828274708
VTVPPGPSL	9	Unmodified	_VTVPPGPSL_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000159352|P55036-2|PSMD4;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENST00000480546.1_1_10:95718567-95721153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.7522888183594	2	433.752736	865.490919	-0.44876	-0.00019465	-0.019157	-8.3095E-06	-0.46792	-0.00020296	433.7527343261224	39.878	0.73933	39.878	39.738	40.477	0					47	29	3	0	0	0	0.034359	1	15160	15160		104.75	27.9	1	437130			48151	9952;5310	31961	32092	48750	48750					0.052792840115330364
VTVPPGPSL	9	Unmodified	_VTVPPGPSL_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000159352|P55036-2|PSMD4;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENST00000480546.1_1_10:95718567-95721153:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.2552185058594	2	433.752736	865.490919	-0.51946	-0.00022532	1.1064	0.0004799	0.58694	0.00025459	433.75303390701293	39.6	0.26223	39.6	39.507	39.769	0					17	13	2	0	0	0	0.30951	1	14108	14108		49.442	8.8689	1	70460			48152	9952;5310	31961	32092	48751	48751					0.052792840115330364
VTVPWVPQGLG	11	Unmodified	_VTVPWVPQGLG_					0	0	0			REV__SLC27A5|p.A28T|1|0.67|ENSG00000083807|chr19:58511874-58511874|C/T|missense_variant	REV__SLC27A5|p.A28T|1|0.67|ENSG00000083807|chr19:58511874-58511874|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	384.8858337402344	3	384.885241	1151.63389	-0.14348	-5.5224E-05	2.1135	0.00081346	1.97	0.00075824	384.88589296622735	26.919	0.12161	26.919	26.866	26.988	0					5	3	2	0	0	0	0.65797	1	8742	8742		31.634	2.0835	1	65543	+		48153	21530	31962	32093	48752	48752					0.06414291402734307
VTVQEMVTK	9	Unmodified	_VTVQEMVTK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7825927734375	2	517.781167	1033.54778	2.0615	0.0010674	-0.32994	-0.00017084	1.7316	0.00089659	517.7812568361213	30.958	0.12976	30.958	30.907	31.036	0					12	5	3	0	0	0	0.082776	1	9907	9907		83.647	21.54	1	111280			48154	4144	31963	32094	48753	48753					0.032349635057244086
VTVQEMVTK	9	Unmodified	_VTVQEMVTK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7813110351562	2	517.781167	1033.54778	1.0218	0.00052906	-0.92546	-0.00047919	0.096315	4.987E-05	517.7808748191197	31.234	0.32063	31.234	31.093	31.414	0					20	7	4	0	0	0	1.3064E-05	1	11749	11749		204.79	72.03	1	780850			48155	4144	31963	32094	48754	48754					0.032349635057244086
VTVQEMVTK	9	Unmodified	_VTVQEMVTK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.781005859375	2	517.781167	1033.54778	1.235	0.00063948	-0.83201	-0.0004308	0.40303	0.00020868	517.7802919522308	31.012	0.14383	31.012	30.915	31.059	0					5	3	2	0	0	0	0.037712	1	10621	10621		101.46	39.352	1	80490			48156	4144	31963	32094	48755	48755					0.032349635057244086
VTVQEMVTK	9	Unmodified	_VTVQEMVTK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.78125	2	517.781167	1033.54778	0.23806	0.00012326	-0.10836	-5.6109E-05	0.12969	6.7152E-05	517.7811675554739	31.182	0.26011	31.182	31.076	31.336	0					13	5	4	0	0	0	0.00014666	1	11640	11640		191.45	65.207	1	923940			48157	4144	31963	32094	48756	48756					0.032349635057244086
VTVRPGLAM	9	Unmodified	_VTVRPGLAM_					0	0	0		nc|ENSG00000099977|P30046-2|DDT;ENSG00000099977|ENST00000398344|DDT;ENST00000444947.2_1_22:24315904-24316657:-|nuORF;ENSG00000099974|ENST00000215770|DDTL	nc|ENSG00000099977|P30046-2|DDT	nc|ENSG00000099977|P30046-2|DDT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.2736511230469	2	472.273312	942.532072	-0.58447	-0.00027603	1.5809	0.00074663	0.99646	0.0004706	472.27406812250314	33.392	0.29043	33.392	33.248	33.538	0					12	7	2	0	0	0	0.17854	1	12362	12362		64.207	3.2353	1	217600			48158	1955	31964	32095	48757	48757					0.05850721779336254
VTVRPGLAM	9	Unmodified	_VTVRPGLAM_					0	0	0		nc|ENSG00000099977|P30046-2|DDT;ENSG00000099977|ENST00000398344|DDT;ENST00000444947.2_1_22:24315904-24316657:-|nuORF;ENSG00000099974|ENST00000215770|DDTL	nc|ENSG00000099977|P30046-2|DDT	nc|ENSG00000099977|P30046-2|DDT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.2733459472656	2	472.273312	942.532072	-1.456	-0.00068764	1.4121	0.00066692	-0.043891	-2.0729E-05	472.27408475642954	33.178	0.19823	33.178	33.095	33.294	0					18	8	3	0	0	0	0.17854	1	11118	11118		64.207	14.183	1	105650			48159	1955	31964	32095	48758	48758					0.05850721779336254
VTVRPGLAM	9	Unmodified	_VTVRPGLAM_					0	0	0		nc|ENSG00000099977|P30046-2|DDT;ENSG00000099977|ENST00000398344|DDT;ENST00000444947.2_1_22:24315904-24316657:-|nuORF;ENSG00000099974|ENST00000215770|DDTL	nc|ENSG00000099977|P30046-2|DDT	nc|ENSG00000099977|P30046-2|DDT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.27325439453125	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.173	1	33.173	32.673	33.673	0								0	0	0	0.18645	1	11613	11613		52.937	1.6012	1				48160	1955	31964	32095	48759	48759					0.05850721779336254
VTVRPGLAM	9	Unmodified	_VTVRPGLAM_					0	0	0		nc|ENSG00000099977|P30046-2|DDT;ENSG00000099977|ENST00000398344|DDT;ENST00000444947.2_1_22:24315904-24316657:-|nuORF;ENSG00000099974|ENST00000215770|DDTL	nc|ENSG00000099977|P30046-2|DDT	nc|ENSG00000099977|P30046-2|DDT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.2731628417969	2	472.273312	942.532072	0.61677	0.00029128	-0.97543	-0.00046067	-0.35866	-0.00016939	472.2730005429348	33.243	0.45798	33.243	33.091	33.549	0					23	9	3	0	0	0	0.25716	1	12675	12675		54.776	1.4249	1	619100			48161	1955	31964	32095	48760	48760					0.05850721779336254
VTVSDHIQK	9	Unmodified	_VTVSDHIQK_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.78271484375	2	513.782556	1025.55056	-1.6389	-0.00084202	2.447	0.0012572	0.80815	0.00041521	513.7836368250254	20.215	0.10751	20.215	20.158	20.265	0					4	2	2	0	0	0	0.11898	1	5654	5654		75.043	16.261	1	147340			48162	5273	31965	32096	48761	48761					0.038805549548897034
VTVSGGTPK	9	Unmodified	_VTVSGGTPK_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	423.23968505859375	2	423.239993	844.465432	0.36085	0.00015273	-0.5954	-0.000252	-0.23454	-9.9267E-05	423.2397757363989	18.002	0.16177	18.002	17.918	18.08	0					8	4	2	0	0	0	0.3269	1	4419	4419		47.96	7.1814	1	121910			48163	4196	31966	32097	48762	48762					0.03697809489085557
VTVSGGTPK	9	Unmodified	_VTVSGGTPK_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2397766113281	2	423.239993	844.465432	0.97867	0.00041421	-1.3762	-0.00058247	-0.39754	-0.00016825	423.2393708965093	18.342	0.19156	18.342	18.254	18.445	0					9	4	3	0	0	0	0.0097668	1	5341	5341		141.52	29.872	1	681700			48164	4196	31966	32097	48763	48763					0.03697809489085557
VTVSGGTPK	9	Unmodified	_VTVSGGTPK_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.23980712890625	2	423.239993	844.465432	0.13733	5.8125E-05	-0.30456	-0.0001289	-0.16723	-7.0778E-05	423.2398350813919	18.076	0.16592	18.076	17.969	18.135	0					6	3	2	0	0	0	0.12834	1	4654	4654		72.879	11.907	1	123850			48165	4196	31966	32097	48764	48764					0.03697809489085557
VTVSSTVP	8	Unmodified	_VTVSSTVP_					0	0	0			REV__ENST00000369902.7_1_10:104389918-104390017:+|nuORF	REV__ENST00000369902.7_1_10:104389918-104390017:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	395.22021484375	2	395.221268	788.427984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.379	1	19.379	18.879	19.879	0								0	0	0	1.7419	1	5002	5002		28.254	0	1		+		48166	18628	31967	32098	48765	48765					0.02530718223488293
VTVSTPLCK	9	Unmodified	_VTVSTPLCK_					0	0	0		ENST00000537239.2_1_9:37588826-37588874:-|nuORF	ENST00000537239.2_1_9:37588826-37588874:-|nuORF	ENST00000537239.2_1_9:37588826-37588874:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2644958496094	2	474.265153	946.515753	-0.59446	-0.00028193	0.039732	1.8844E-05	-0.55472	-0.00026309	474.26508919730173	30.14	0.51062	30.14	29.947	30.458	0					14	10	2	0	0	0	0.35021	1	11121	11121		45.972	5.1941	1	206370			48167	10498	31968	32099	48766	48766					0.040355958225973154
VTVVGPQKK	9	Unmodified	_VTVVGPQKK_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2998352050781	2	478.300384	954.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.093	1	12.093	11.593	12.593	0								0	0	0	0.28996	1	2493	2493		37.159	5.2042	1				48168	1210	31969	32100	48767	48767					0.10710637202555517
VTWGTGAGAE	10	Unmodified	_VTWGTGAGAE_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	474.72589111328125	2	474.724707	947.43486	3.6332	0.0017248	-0.32684	-0.00015516	3.3063	0.0015696	474.7245370601533	24.162	0.3056	24.162	23.967	24.273	0					15	9	2	0	0	0	0.39566	1	7324	7324		56.721	56.721	1	118460	+		48169	17434	31970	32101	48768	48768					-0.040959688959446794
VTWSPNGL	8	Unmodified	_VTWSPNGL_					0	0	0			REV__ENSG00000144840|ENST00000273375|RABL3	REV__ENSG00000144840|ENST00000273375|RABL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.2267761230469	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.32	1	40.32	39.82	40.82	0								0	0	0	1.7419	1	15366	15366		38.806	0	1		+		48170	15247	31971	32102	48769	48769					-0.0021045968237558554
VTYEHLITK	9	Unmodified	_VTYEHLITK_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.3088989257812	2	552.308406	1102.60226	-1.2788	-0.00070628	2.1887	0.0012088	0.90988	0.00050254	552.3098146574583	27.588	0.17474	27.588	27.483	27.658	0					7	4	2	0	0	0	0.12834	1	9047	9047		72.879	23.438	1	85043			48171	4092	31972	32103	48770	48770					0.05506298648788288
VTYGPIQF	8	Unmodified	_VTYGPIQF_					0	0	0			REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	REV__APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	462.7446594238281	2	462.744911	923.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.12	1	37.12	36.62	37.62	0								0	0	0	1.7419	1	13295	13295		47.916	7.343	1		+		48172	12186	31973	32104	48771	48771					0.010469974944726346
VTYHMFRTK	9	Unmodified	_VTYHMFRTK_					0	0	0		ENST00000453465.1_1_10:21915067-21915193:-|nuORF;ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	591.8091430664062	2	591.808051	1181.60155	0.12575	7.4419E-05	2.4901	0.0014737	2.6158	0.0015481	591.8092053364147	23.561	0.19578	23.561	23.495	23.691	0					12	7	2	0	0	0	0.13907	1	6834	6834		54.722	39.857	1	50053			48173	9667	31974	32105	48772	48772					0.01801180728102736
VTYHMFRTK	9	Unmodified	_VTYHMFRTK_					0	0	0		ENST00000453465.1_1_10:21915067-21915193:-|nuORF;ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	394.87432861328125	3	394.874459	1181.60155	0.70052	0.00027662	-1.3274	-0.00052415	-0.62686	-0.00024753	394.87403515910086	23.855	0.32806	23.855	23.751	24.079	0					15	7	3	0	0	0	0.3269	1	7945	7945		47.96	11.642	1	305280			48174	9667	31974	32105	48773	48773					0.01801180728102736
VTYHMFRTK	9	Unmodified	_VTYHMFRTK_					0	0	0		ENST00000453465.1_1_10:21915067-21915193:-|nuORF;ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	591.8095092773438	2	591.808051	1181.60155	0.25617	0.0001516	2.7863	0.0016489	3.0424	0.0018005	591.8090631835886	23.826	0.36871	23.826	23.721	24.09	0					15	8	3	0	0	0	0.13907	1	7951	7951		46.457	0	1	671260			48175	9667	31974	32105	48774	48774					0.01801180728102736
VTYHMFRTK	9	Unmodified	_VTYHMFRTK_					0	0	0		ENST00000453465.1_1_10:21915067-21915193:-|nuORF;ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	394.87481689453125	3	394.874459	1181.60155	0.10913	4.3094E-05	-0.15626	-6.1701E-05	-0.047121	-1.8607E-05	394.87448800829367	23.771	1.0662	23.771	23.663	24.729	0					36	21	4	0	0	0	0.30841	1	8221	8221		49.536	20.366	1	1542700			48176	9667	31974	32105	48775	48775					0.01801180728102736
VTYHMFRTK	9	Unmodified	_VTYHMFRTK_					0	0	0		ENST00000453465.1_1_10:21915067-21915193:-|nuORF;ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	394.8750915527344	3	394.874459	1181.60155	0.20501	8.0955E-05	1.6433	0.00064889	1.8483	0.00072984	394.8748277376443	23.623	0.16443	23.623	23.574	23.738	0					8	4	3	0	0	0	0.51991	1	7246	7246		30.318	5.7985	1	147200			48177	9667	31974	32105	48776	48776					0.01801180728102736
VTYILLCIL	9	Unmodified	_VTYILLCIL_					0	0	0			REV__TMEM192|p.C182G|1|0.24|ENSG00000170088|chr4:165088498-165088498|A/C|missense_variant	REV__TMEM192|p.C182G|1|0.24|ENSG00000170088|chr4:165088498-165088498|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	350.8817138671875	3	350.88044	1049.61949	3.0373	0.0010657	0.44347	0.0001556	3.4807	0.0012213	350.8806090890784	25.693	0.25484	25.693	25.582	25.837	0					8	3	3	0	0	0	0.55379	1	9041	9041		26.693	0	1	859200	+		48178	16349	31975	32106	48777	48777					0.09666502930235765
VTYITHIY	8	Unmodified	_VTYITHIY_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2706604003906	2	505.271293	1008.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.695	1	33.695	33.195	34.195	0								0	0	0	1.7419	1	11853	11853		42.474	11.971	1		+		48179	15458	31976	32107	48778	48778					0.024109555572863428
VTYMIPLGL	9	Unmodified	_VTYMIPLGL_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7873840332031	2	503.785721	1005.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.149	1	19.149	18.649	19.649	0								0	0	0	0.31623	1	4900	4900		31.955	2.8053	1				48180	6811	31977	32108	48779	48779					0.0543335686206774
VTYMIPLGL	9	Unmodified	_VTYMIPLGL_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7869567871094	2	503.785721	1005.55689	-0.06006	-3.0257E-05	3.4951	0.0017608	3.4351	0.0017305	503.787457863697	18.036	2.5231	18.036	17.448	19.971	0					144	60	4	0	0	0	0.14734	1	5724	5724		68.485	13.72	1	965660			48181	6811	31977	32108	48780	48780					0.0543335686206774
VTYMIPLGL	9	Unmodified	_VTYMIPLGL_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7874755859375	2	503.785721	1005.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.489	1	22.489	21.989	22.989	0								0	0	0	0.23459	1	7619	7619		45.952	3.4775	1				48182	6811	31977	32108	48781	48781					0.0543335686206774
VTYNGSNLP	9	Unmodified	_VTYNGSNLP_					0	0	0		ADCY10|p.A439V|1|0.27|ENSG00000143199|chr1:167878536-167878536|G/A|missense_variant;ADCY10|p.W654*|1|0.29|ENSG00000143199|chr1:167856362-167856374|CTCCATAAATCTC/-|frameshift_variant;ADCY10|p.N743Tfs*33|1|0.32|ENSG00000143199|chr1:167854433-167854433|T/-|frameshift_variant;ADCY10|p.P1022Sfs*2|1|0.28|ENSG00000143199|chr1:167837262-167837263|-/A|frameshift_variant;nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10	ADCY10|p.A439V|1|0.27|ENSG00000143199|chr1:167878536-167878536|G/A|missense_variant	ADCY10|p.A439V|1|0.27|ENSG00000143199|chr1:167878536-167878536|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.7404479980469	2	482.740357	963.46616	0.066083	3.1901E-05	-0.78544	-0.00037916	-0.71936	-0.00034726	482.740108548964	24.612	0.33287	24.612	24.462	24.795	0					13	9	2	0	0	0	0.41354	1	7300	7300		40.573	3.4135	1	74315			48183	66	31978	32109	48782	48782					-0.017033958618526412
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.2738037109375	2	562.272552	1122.53055	1.2716	0.00071498	-0.56081	-0.00031533	0.71079	0.00039966	562.2722966657008	19.995	0.14002	19.995	19.928	20.069	0					8	4	2	0	0	0	0.31894	1	5270	5270		65.157	13.965	1	230570			48184	3271	31979	32110	48783	48783					-0.025812407757030087
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2730102539062	2	562.272552	1122.53055	0.46114	0.00025929	0.26134	0.00014694	0.72248	0.00040623	562.272714644847	20.33	0.24539	20.33	20.142	20.387	0					13	5	4	0	0	0	0.0068379	1	6299	6299		159.34	79.623	1	1658400			48185	3271	31979	32110	48784	48784					-0.025812407757030087
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	562.2732543945312	2	562.272552	1122.53055	0.12997	7.3076E-05	1.3061	0.0007344	1.4361	0.00080748	562.2731773762927	20.022	0.15055	20.022	19.943	20.093	0					13	5	3	0	0	0	0.0077833	1	5523	5523		154.01	74.56	1	238970			48186	3271	31979	32110	48785	48785					-0.025812407757030087
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	562.2730712890625	2	562.272552	1122.53055	1.8522	0.0010414	-0.42481	-0.00023886	1.4274	0.00080256	562.2724753600404	20.221	0.31944	20.221	20.011	20.331	0					14	6	3	0	0	0	0.010125	1	6530	6530		142.36	65.043	1	1533500			48187	3271	31979	32110	48786	48786					-0.025812407757030087
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.27294921875	2	562.272552	1122.53055	-0.96387	-0.00054196	1.7559	0.00098731	0.79206	0.00044535	562.2735702786805	20.082	0.17654	20.082	19.997	20.173	0					10	4	3	0	0	0	0.078327	1	5568	5568		99.788	36.254	1	256350			48188	3271	31979	32110	48787	48787					-0.025812407757030087
VTYRDSKEK	9	Unmodified	_VTYRDSKEK_					0	0	0		ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant;ADGRF1|p.S617Afs*12|1|0.14|ENSG00000153292|chr6:47009586-47009586|T/-|frameshift_variant;ENSG00000153292|ENST00000371253|ADGRF1;ENST00000471487.5_1_6:46982380-46993719:-|nuORF;ENST00000491283.5_1_6:46988465-46993719:-|nuORF;nc|ENSG00000153292|Q5T601-2|ADGRF1	ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant	ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	375.8679504394531	3	375.868139	1124.58259	0.71944	0.00027041	-0.8439	-0.00031719	-0.12446	-4.6781E-05	375.86782667831636	14.496	0.21792	14.496	14.391	14.609	0					10	4	4	0	0	0	0.56424	1	3632	3632		26.063	10.73	1	242710			48189	76	31980	32111	48788	48788					0.025279226380462205
VTYTEHAKR	9	Unmodified	_VTYTEHAKR_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	552.7933349609375	2	552.793455	1103.57236	0.22531	0.00012455	0.3509	0.00019397	0.57621	0.00031853	552.7938361636463	14.556	0.081836	14.556	14.51	14.592	0					5	3	2	0	0	0	0.023928	1	3179	3179		115.49	60.772	1	87113			48190	5259	31981	32112	48789	48789					0.024713597034633494
VTYTEHAKR	9	Unmodified	_VTYTEHAKR_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.793701171875	2	552.793455	1103.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.818	1	14.818	14.318	15.318	0								0	0	0	0.0012548	1	3926	3926		145.16	76.671	1				48191	5259	31981	32112	48790	48790					0.024713597034633494
VTYTEHAKR	9	Unmodified	_VTYTEHAKR_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.793212890625	2	552.793455	1103.57236	-1.2454	-0.00068845	1.7299	0.00095627	0.48447	0.00026781	552.794513979216	14.625	0.091288	14.625	14.565	14.656	0					6	3	2	0	0	0	0.16806	1	3128	3128		65.465	17.506	1	146930			48192	5259	31981	32112	48791	48791					0.024713597034633494
VTYTPALP	8	Unmodified	_VTYTPALP_					0	0	0		ENSG00000172927|ENST00000441339|MYEOV	ENSG00000172927|ENST00000441339|MYEOV	ENSG00000172927|ENST00000441339|MYEOV	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	431.237548828125	2	431.239461	860.46437	-2.8756	-0.0012401	-0.95873	-0.00041344	-3.8343	-0.0016535	431.23899859269267	17.466	0.16714	17.466	17.401	17.568	0					7	5	2	0	0	0	0.64096	1	4364	4364		42.474	0	1	103960			48193	6395	31982	32113	48792	48792					0.028555951201724383
VTYVPVTTFK	10	Unmodified	_VTYVPVTTFK_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.825927734375	2	577.826432	1153.63831	1.7181	0.00099276	-1.3641	-0.0007882	0.35402	0.00020456	577.8256465786972	37.952	0.23523	37.952	37.846	38.081	0					14	8	2	0	0	0	0.59277	1	14894	14894		35.152	3.6222	1	66959			48194	1468	31983	32114	48793	48793					0.06763755825636508
VTYWMTSPVL	10	Unmodified	_VTYWMTSPVL_					0	0	0			REV__ENST00000334121.10_1_5:65475561-65475615:+|nuORF	REV__ENST00000334121.10_1_5:65475561-65475615:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.8055419921875	2	598.804642	1195.59473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.429	1	34.429	33.929	34.929	0								0	0	0	0.3805	1	13270	13270		3.1592	0	1		+		48195	18400	31984	32115	48794	48794					0.00475823056876834
VTYYLLAAR	9	Unmodified	_VTYYLLAAR_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3-5|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3-5|MATCAP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.3067626953125	2	535.305667	1068.59678	-0.59308	-0.00031748	1.3971	0.0007479	0.80407	0.00043042	535.3064836913952	31.939	0.26548	31.939	31.855	32.121	0					21	10	3	0	0	0	0.50461	1	10607	10607		31.955	2.7848	1	165640	+		48196	15991	31985	32116	48795	48795					0.06522619856968959
VVAAGGVEK	9	Unmodified	_VVAAGGVEK_					0	0	0		ENSG00000103485|ENST00000395384|QPRT	ENSG00000103485|ENST00000395384|QPRT	ENSG00000103485|ENST00000395384|QPRT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.2423400878906	2	415.242535	828.470518	0.5156	0.0002141	-0.48206	-0.00020017	0.033541	1.3927E-05	415.2422403440881	18.276	0.14369	18.276	18.182	18.326	0					8	3	3	0	0	0	0.17854	1	5305	5305		64.207	21.811	1	227370			48197	2243	31986	32117	48796	48796					0.04942113351705757
VVAAGGVEK	9	Unmodified	_VVAAGGVEK_					0	0	0		ENSG00000103485|ENST00000395384|QPRT	ENSG00000103485|ENST00000395384|QPRT	ENSG00000103485|ENST00000395384|QPRT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.2423400878906	2	415.242535	828.470518	0.064733	2.688E-05	-0.43773	-0.00018177	-0.373	-0.00015489	415.2423124976084	18.216	0.17004	18.216	18.105	18.275	0					7	3	3	0	0	0	0.24095	1	5564	5564		56.721	7.2795	1	770030			48198	2243	31986	32117	48797	48797					0.04942113351705757
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	347.8903503417969	3	347.890438	1040.64948	0.18198	6.3308E-05	-0.81465	-0.00028341	-0.63268	-0.0002201	347.8903331097829	30.024	0.21613	30.024	29.949	30.166	0					13	8	3	0	0	0	0.48389	1	9518	9518		34.173	2.2177	1	109010			48199	7711	31987	32118	48798	48798					0.13078622710463605
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.3321533203125	2	521.332019	1040.64948	0.74159	0.00038662	-0.15415	-8.0362E-05	0.58744	0.00030625	521.3320457081566	30.032	0.1599	30.032	29.949	30.109	0					9	6	2	0	0	0	0.087861	1	9529	9529		88.643	56.688	1	79937			48200	7711	31987	32118	48799	48799					0.13078622710463605
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	347.8905029296875	3	347.890438	1040.64948	0.5001	0.00017398	-0.62107	-0.00021606	-0.12097	-4.2085E-05	347.89024746286015	30.319	0.46338	30.319	30.195	30.658	0					22	11	3	0	0	0	0.22377	1	10894	10894		58.782	4.0056	1	740730			48201	7711	31987	32118	48800	48800					0.13078622710463605
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.3322143554688	2	521.332019	1040.64948	0.075899	3.9568E-05	0.4267	0.00022245	0.50259	0.00026202	521.3322701077768	30.319	0.33096	30.319	30.195	30.526	0					17	8	3	0	0	0	0.063823	1	10905	10905		85.359	54.856	1	430300			48202	7711	31987	32118	48801	48801					0.13078622710463605
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.3321533203125	2	521.332019	1040.64948	-0.15236	-7.9431E-05	0.51267	0.00026727	0.3603	0.00018784	521.3323021758773	30.257	0.33375	30.257	30.163	30.496	0					15	7	3	0	0	0	0.012915	1	11298	11298		133.47	85.553	1	454460			48203	7711	31987	32118	48802	48802					0.13078622710463605
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	347.89013671875	3	347.890438	1040.64948	-1.9753	-0.0006872	1.7013	0.00059188	-0.274	-9.5323E-05	347.8909962983805	30.056	0.18263	30.056	30.003	30.186	0					6	4	2	0	0	0	0.39215	1	10198	10198		42.396	10.441	1	149400			48204	7711	31987	32118	48803	48803					0.13078622710463605
VVADISVAK	9	Unmodified	_VVADISVAK_					0	0	0		ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENST00000508511.5_1_4:99997418-100009857:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.27166748046875	2	451.271293	900.528032	0.21272	9.5995E-05	-0.39291	-0.00017731	-0.18019	-8.1313E-05	451.27109510996956	27.684	0.18514	27.684	27.594	27.779	0					7	4	2	0	0	0	0.16806	1	9690	9690		65.465	12.529	1	121440			48205	7504	31988	32119	48804	48804					0.07378955557283007
VVADKSCEK	9	Unmodified	_VVADKSCEK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7488708496094	2	489.749867	977.485181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.659	1	13.659	13.159	14.159	0								0	0	0	0.088368	1	2704	2704		75.043	18.322	1				48206	7739	31989	32120	48805	48805					-0.004461825624616722
VVADKSCEK	9	Unmodified	_VVADKSCEK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.749755859375	2	489.749867	977.485181	0.79848	0.00039105	-1.3921	-0.00068176	-0.59359	-0.00029071	489.7493611961506	13.94	0.29825	13.94	13.897	14.196	0					12	7	3	0	0	0	0.02953	1	3298	3298		109.48	16.283	1	478060			48207	7739	31989	32120	48806	48806					-0.004461825624616722
VVADKSCEK	9	Unmodified	_VVADKSCEK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.7502136230469	2	489.749867	977.485181	-1.2534	-0.00061388	1.6481	0.00080718	0.3947	0.0001933	489.75067266718776	13.697	0.060748	13.697	13.657	13.718	0					6	3	2	0	0	0	0.19605	1	2855	2855		62.107	14.45	1	86352			48208	7739	31989	32120	48807	48807					-0.004461825624616722
VVADKSCEK	9	Unmodified	_VVADKSCEK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7496032714844	2	489.749867	977.485181	0.60285	0.00029524	-1.716	-0.00084041	-1.1131	-0.00054516	489.74934889123847	13.931	0.35397	13.931	13.687	14.041	0					14	7	3	0	0	0	0.42902	1	3515	3515		39.253	2.0937	1	525020			48209	7739	31989	32120	48808	48808					-0.004461825624616722
VVADKSCEK	9	Unmodified	_VVADKSCEK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7496643066406	2	489.749867	977.485181	0.77125	0.00037772	-1.4124	-0.00069171	-0.64112	-0.00031399	489.74922475552154	13.906	0.25619	13.906	13.8	14.056	0					10	5	3	0	0	0	0.056004	1	3349	3349		93.143	26.714	1	1074200			48210	7739	31989	32120	48809	48809					-0.004461825624616722
VVAFPTDSK	9	Unmodified	_VVAFPTDSK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	482.2601318359375	2	482.260925	962.507297	0.04635	2.2353E-05	-0.81773	-0.00039436	-0.77138	-0.00037201	482.26031288188074	28.772	0.27378	28.772	28.686	28.96	0					19	9	3	0	0	0	0.25716	1	9003	9003		54.776	13.998	1	224000			48211	4881	31990	32121	48810	48810					0.024543651776298248
VVAFPTDSK	9	Unmodified	_VVAFPTDSK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.2608642578125	2	482.260925	962.507297	0.56064	0.00027038	-1.0955	-0.00052832	-0.53487	-0.00025795	482.2603771471822	29.048	0.32701	29.048	28.929	29.256	0					15	8	2	0	0	0	0.11898	1	10342	10342		75.043	34.265	1	1373300			48212	4881	31990	32121	48811	48811					0.024543651776298248
VVAFPTDSK	9	Unmodified	_VVAFPTDSK_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2607727050781	2	482.260925	962.507297	-0.6157	-0.00029693	0.54647	0.00026354	-0.069237	-3.339E-05	482.2610950641051	29.017	0.36365	29.017	28.86	29.224	0					14	7	2	0	0	0	0.28897	1	10567	10567		51.193	8.7966	1	801950			48213	4881	31990	32121	48812	48812					0.024543651776298248
VVAGSERLGF	10	Unmodified	_VVAGSERLGF_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7838134765625	2	517.785099	1033.55564	0.048522	2.5124E-05	-3.8896	-0.002014	-3.8411	-0.0019888	517.7832565524949	22.599	0.56408	22.599	22.323	22.887	0					28	13	3	0	0	0	0.2978	1	7372	7372		37.159	1.9584	1	1196000			48214	11644	31991	32122	48813	48813					0.04020858817534645
VVAGTSELPR	10	Unmodified	_VVAGTSELPR_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	343.5292663574219	3	343.529346	1027.56621	-0.030163	-1.0362E-05	0.03784	1.2999E-05	0.0076775	2.6375E-06	343.5293042277153	17.939	0.15938	17.939	17.834	17.994	0					9	3	3	0	0	0	0.66185	1	5283	5283		31.634	2.0835	1	387330	+		48215	12978	31992	32123	48814	48814					0.05352841471949432
VVALLDRDSSI	11	Unmodified	_VVALLDRDSSI_					0	0	0			REV__ENST00000457831.1_1_X:149400805-149400952:-|nuORF	REV__ENST00000457831.1_1_X:149400805-149400952:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.3345947265625	2	594.335153	1186.65575	1.4157	0.00084142	-2.596	-0.0015429	-1.1803	-0.00070149	594.3336305079044	36.305	0.30588	36.305	36.214	36.52	0					10	8	2	0	0	0	0.69983	1	14152	14152		24.519	1.9395	1	63912	+		48216	17250	31993	32124	48815	48815					0.06989051360665144
VVAPLELSR	9	Unmodified	_VVAPLELSR_					0	0	0			REV__tr|U7T2Z8|U7T2Z8_FUSNUPhosphoenolpyruvate-proteinphosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00339PE=3SV=1	REV__tr|U7T2Z8|U7T2Z8_FUSNUPhosphoenolpyruvate-proteinphosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00339PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.2982482910156	2	492.297842	982.581131	-0.036247	-1.7844E-05	-0.6593	-0.00032457	-0.69555	-0.00034242	492.2979182014213	22.596	0.41194	22.596	22.471	22.883	0					15	9	2	0	0	0	0.43426	1	6815	6815		38.806	4.6336	1	113250	+		48217	22125	31994	32125	48816	48816					0.08914333339942004
VVAPPIQRL	9	Unmodified	_VVAPPIQRL_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.8142395019531	2	496.816202	991.617851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.825	1	40.825	40.325	41.325	0								0	0	0	0.27166	1	14477	14477		40.573	8.6178	1		+		48218	13129	31995	32126	48817	48817					0.12170629956506218
VVAQTKAISG	10	Unmodified	_VVAQTKAISG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.2879943847656	2	487.287474	972.560395	-0.054981	-2.6791E-05	1.4264	0.00069508	1.3715	0.00066829	487.28799191235356	20.56	0.087406	20.56	20.52	20.607	0					4	2	2	0	0	0	0.44292	1	5533	5533		51.528	16.376	1	136550			48219	11803	31996	32127	48818	48818					0.07301742960282809
VVAQTKAISG	10	Unmodified	_VVAQTKAISG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.2873840332031	2	487.287474	972.560395	0.72078	0.00035123	-0.85411	-0.0004162	-0.13333	-6.497E-05	487.2870908049484	20.896	0.28132	20.896	20.699	20.98	0					17	6	4	0	0	0	0.24594	1	6549	6549		73.841	22.648	1	1206000			48220	11803	31996	32127	48819	48819					0.07301742960282809
VVAQTKAISG	10	Unmodified	_VVAQTKAISG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.2871398925781	2	487.287474	972.560395	-0.08327	-4.0577E-05	-0.47955	-0.00023368	-0.56282	-0.00027426	487.28725721604343	20.79	0.21736	20.79	20.679	20.896	0					8	4	3	0	0	0	0.14893	1	6799	6799		86.882	44.017	1	917960			48221	11803	31996	32127	48820	48820					0.07301742960282809
VVAQTKAISG	10	Unmodified	_VVAQTKAISG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2880554199219	2	487.287474	972.560395	0.4411	0.00021494	0.81183	0.00039559	1.2529	0.00061054	487.28782370790424	20.621	0.10717	20.621	20.569	20.677	0					4	2	2	0	0	0	0.57211	1	5842	5842		37.508	9.2539	1	89155			48222	11803	31996	32127	48821	48821					0.07301742960282809
VVAQTKAISG	10	Unmodified	_VVAQTKAISG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2870178222656	2	487.287474	972.560395	-0.23098	-0.00011255	0.13999	6.8217E-05	-0.090987	-4.4337E-05	487.2872790266909	20.652	0.18338	20.652	20.477	20.66	0					5	4	2	0	0	0	0.38194	1	5836	5836		58.23	8.7884	1	75806			48223	11803	31996	32127	48822	48822					0.07301742960282809
VVAQTKAISG	10	Unmodified	_VVAQTKAISG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2877197265625	2	487.287474	972.560395	-0.5374	-0.00026187	0.59662	0.00029073	0.059219	2.8857E-05	487.28789856526447	20.802	0.26803	20.802	20.591	20.86	0					12	5	4	0	0	0	0.078327	1	6654	6654		99.788	54.766	1	756010			48224	11803	31996	32127	48823	48823					0.07301742960282809
VVAQTKAISG	10	Unmodified	_VVAQTKAISG_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP-ACSS2|1|fusion	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.2877197265625	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.811	1	20.811	20.311	21.311	0								0	0	0	0.2634	1	6670	6670		56.434	6.9922	1				48225	11803	31996	32127	48824	48824					0.07301742960282809
VVASCSAMEK	10	Carbamidomethyl (C),Oxidation (M)	_VVASC(Carbamidomethyl (C))SAM(Oxidation (M))EK_	VVASC(1)SAMEK	VVASCSAM(1)EK	VVASC(77)SAMEK	VVASCSAM(77)EK	0	1	1			REV__ENSG00000166446|ENST00000570137|CDYL2	REV__ENSG00000166446|ENST00000570137|CDYL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2521362304688	2	549.251917	1096.48928	0.24759	0.00013599	0.17301	9.5028E-05	0.4206	0.00023101	549.2521058113912	11.731	0.17789	11.731	11.68	11.857	0					11	5	3	0	0	0	0.21754	1	2478	2478		77.318	24.381	1	363430	+		48226	16123	31997	32128	48825	48825	577	619			-0.0551046113105258
VVASPIAAR	9	Unmodified	_VVASPIAAR_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.27203369140625	2	442.271627	882.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.989	1	24.989	24.489	25.489	0								0	0	0	0.063706	1	7459	7459		82.241	39.844	1				48227	7011	31998	32129	48826	48826					0.08273794996989636
VVASPIAAR	9	Unmodified	_VVASPIAAR_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2713623046875	2	442.271627	882.528701	-0.097011	-4.2905E-05	-0.31513	-0.00013937	-0.41214	-0.00018228	442.2715085486657	25.266	0.2888	25.266	25.115	25.404	0					11	6	3	0	0	0	0.098791	1	8598	8598		79.713	33.761	1	459430			48228	7011	31998	32129	48827	48827					0.08273794996989636
VVASPIAAR	9	Unmodified	_VVASPIAAR_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2714538574219	2	442.271627	882.528701	3.1208	0.0013802	-3.2562	-0.0014401	-0.13548	-5.9917E-05	442.270004982871	24.989	0.17068	24.989	24.913	25.083	0					8	5	2	0	0	0	0.20551	1	7719	7719		60.972	7.6205	1	35777			48229	7011	31998	32129	48828	48828					0.08273794996989636
VVASPIAAR	9	Unmodified	_VVASPIAAR_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.2714538574219	2	442.271627	882.528701	-0.27593	-0.00012204	-0.18016	-7.968E-05	-0.45609	-0.00020172	442.2715978198168	25.214	0.31932	25.214	25.056	25.375	0					15	6	3	0	0	0	0.098791	1	8932	8932		79.713	37.316	1	393810			48230	7011	31998	32129	48829	48829					0.08273794996989636
VVASPIAAR	9	Unmodified	_VVASPIAAR_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.27130126953125	2	442.271627	882.528701	-0.51428	-0.00022745	-0.18986	-8.397E-05	-0.70414	-0.00031142	442.2714645030535	25.203	0.26941	25.203	25.012	25.281	0					10	5	3	0	0	0	0.39215	1	8794	8794		42.396	3.59	1	243540			48231	7011	31998	32129	48830	48830					0.08273794996989636
VVASQDRLM	9	Unmodified	_VVASQDRLM_					0	0	0			REV__nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	REV__nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	340.183349609375	3	340.183181	1017.52771	0.95388	0.00032449	-1.451	-0.0004936	-0.49711	-0.00016911	340.1828514273325	14.636	0.33561	14.636	14.428	14.764	0					14	8	3	0	0	0	0.4966	1	3562	3562		32.812	6.1195	1	77461	+		48232	16567	31999	32130	48831	48831					0.01965212565778529
VVATMRDLGKK	11	Unmodified	_VVATMRDLGKK_					0	0	0		ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.5721435546875	3	406.572669	1216.69618	0.13876	5.6416E-05	-0.87637	-0.00035631	-0.73761	-0.00029989	406.57225732591115	19.338	0.096409	19.338	19.289	19.386	0					4	2	2	0	0	0	0.6208	1	5241	5241		35.178	9.1148	1	72972			48233	1640	32000	32131	48832	48832					0.09649694479435311
VVATMRESK	9	Unmodified	_VVATMRESK_					0	0	0			REV__nc|ENSG00000175449|Q8TAC1|RFESD	REV__nc|ENSG00000175449|Q8TAC1|RFESD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.78131103515625	2	510.778959	1019.54336	4.0604	0.002074	1.0378	0.0005301	5.0983	0.0026041	510.77945826370916	33.706	0.14336	33.706	33.655	33.798	0					8	5	2	0	0	0	0.1424	1	11335	11335		63.306	4.5243	1	68726	+		48234	16612	32001	32132	48833	48833					0.03437499082826889
VVATMRESK	9	Unmodified	_VVATMRESK_					0	0	0			REV__nc|ENSG00000175449|Q8TAC1|RFESD	REV__nc|ENSG00000175449|Q8TAC1|RFESD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.78167724609375	2	510.778959	1019.54336	0.0091244	4.6605E-06	3.4687	0.0017717	3.4778	0.0017764	510.7813036005843	33.948	0.46476	33.948	33.748	34.212	0					25	10	4	0	0	0	0.36135	1	12907	12907		37.812	13.609	1	740460	+		48235	16612	32001	32132	48834	48834					0.03437499082826889
VVAVFVQGPA	10	Unmodified	_VVAVFVQGPA_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.78546142578125	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.65	1	10.65	10.15	11.15	0								0	0	0	0.4201	1	2061	2061		24.203	3.2558	1				48236	3917	32002	32133	48835	48835					0.06630948311237717
VVAVGRAL	8	Unmodified	_VVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.7555236816406	2	392.755613	783.496673	0.12552	4.9297E-05	-0.31001	-0.00012176	-0.18449	-7.246E-05	392.7554345582651	28.687	0.31298	28.687	28.581	28.894	0					16	6	4	0	0	0	0.24777	1	10549	10549		105.27	30.752	1	1133500			48237	6043	32003	32134	48836	48836					0.09626427313833119
VVAVGRAL	8	Unmodified	_VVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.7558898925781	2	392.755613	783.496673	0.21705	8.5246E-05	-0.11839	-4.65E-05	0.09865	3.8745E-05	392.75549050274816	28.498	0.16967	28.498	28.416	28.586	0					8	4	2	0	0	0	0.29779	1	9456	9456		83.287	28.523	1	235830			48238	6043	32003	32134	48837	48837					0.09626427313833119
VVAVGRAL	8	Unmodified	_VVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.7554016113281	2	392.755613	783.496673	-0.15915	-6.2506E-05	-0.26306	-0.00010332	-0.42221	-0.00016582	392.7555932082133	28.481	0.13077	28.481	28.403	28.534	0					5	3	2	0	0	0	0.36926	1	9473	9473		74.517	19.752	1	41780			48239	6043	32003	32134	48838	48838					0.09626427313833119
VVAVGRAL	8	Unmodified	_VVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.75543212890625	2	392.755613	783.496673	-0.66886	-0.0002627	0.4604	0.00018083	-0.20846	-8.1873E-05	392.7557695387728	28.653	0.31554	28.653	28.511	28.826	0					14	6	3	0	0	0	0.27084	1	10398	10398		92.191	29.212	1	1321300			48240	6043	32003	32134	48839	48839					0.09626427313833119
VVAVGRAL	8	Unmodified	_VVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.7555236816406	2	392.755613	783.496673	0.45131	0.00017725	-0.43407	-0.00017048	0.017239	6.7705E-06	392.7553707251272	28.649	0.21684	28.649	28.542	28.758	0					7	4	2	0	0	0	0.57802	1	10420	10420		52.299	0	1	405360			48241	6043	32003	32134	48840	48840					0.09626427313833119
VVAVLLTKK	9	Unmodified	_VVAVLLTKK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	485.8360900878906	2	485.836603	969.658653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.429	1	26.429	25.929	26.929	0								0	0	0	0.13137	1	8031	8031		64.207	35.953	1				48242	6178	32004	32135	48841	48841					0.17260971276130022
VVAVLLTKK	9	Unmodified	_VVAVLLTKK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.83648681640625	2	485.836603	969.658653	-0.27107	-0.0001317	0.17745	8.6213E-05	-0.093618	-4.5483E-05	485.8366029216327	26.711	0.23156	26.711	26.615	26.847	0					11	5	3	0	0	0	0.07136	1	9256	9256		87.696	32.192	1	460000			48243	6178	32004	32135	48842	48842					0.17260971276130022
VVAVLLTKK	9	Unmodified	_VVAVLLTKK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.8365478515625	2	485.836603	969.658653	-0.67144	-0.00032621	0.39023	0.00018959	-0.28121	-0.00013662	485.83685291505566	26.668	0.21793	26.668	26.543	26.761	0					7	4	2	0	0	0	0.16806	1	9578	9578		65.465	31.293	1	165990			48244	6178	32004	32135	48843	48843					0.17260971276130022
VVAVLLTKK	9	Unmodified	_VVAVLLTKK_					0	0	0		ENSG00000169710|ENST00000306749|FASN;FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.2267761230469	3	324.226827	969.658653	0.008821	2.86E-06	-0.14755	-4.7839E-05	-0.13873	-4.4979E-05	324.2267423087904	26.662	0.21957	26.662	26.502	26.722	0					6	4	2	0	0	0	0.53083	1	9458	9458		44.377	30.24	1	227100			48245	6178	32004	32135	48844	48844					0.17260971276130022
VVAVQSVGQCY	11	Unmodified	_VVAVQSVGQCY_					0	0	0			REV__nc|ENSG00000276717|A8MTI9|PRSS47P	REV__nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.8611755371094	3	384.862108	1151.56449	0.045823	1.7636E-05	-2.471	-0.00095098	-2.4252	-0.00093335	384.86105626233996	13.661	0.23295	13.661	13.511	13.744	0					9	6	2	0	0	0	0.54316	1	3168	3168		41.08	15.954	1	142560	+		48246	21252	32005	32136	48845	48845					-0.005225356082974031
VVAVTLDPDT	10	Unmodified	_VVAVTLDPDT_					0	0	0		ERMAP|p.F237V|1|0.3|ENSG00000164010|chr1:42840293-42840293|T/G|missense_variant	ERMAP|p.F237V|1|0.3|ENSG00000164010|chr1:42840293-42840293|T/G|missense_variant	ERMAP|p.F237V|1|0.3|ENSG00000164010|chr1:42840293-42840293|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.85406494140625	3	343.853607	1028.53899	1.4688	0.00050506	-0.1712	-5.8867E-05	1.2976	0.0004462	343.85354444313475	20.372	0.61825	20.372	20.212	20.83	0					22	12	2	0	0	0	0.57211	1	6600	6600		37.508	37.508	1	5054500			48247	11116	32006	32137	48846	48846					0.02586313140909624
VVAYVPEGLL	10	Unmodified	_VVAYVPEGLL_					0	0	0		ENSG00000105675|ENST00000262623|ATP4A;ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant	ENSG00000105675|ENST00000262623|ATP4A	ENSG00000105675|ENST00000262623|ATP4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.3104248046875	2	530.307875	1058.6012	0.28716	0.00015228	2.6683	0.001415	2.9555	0.0015673	530.310200923974	29.058	0.25182	29.058	28.944	29.195	0					10	5	3	0	0	0	0.52275	1	10727	10727		23.042	1.0826	1	97760			48248	2383	32007	32138	48847	48847					0.07424084279909948
VVCDTLMGWQK	11	Unmodified	_VVCDTLMGWQK_					0	0	0			REV__ENST00000422644.2_1_X:73693403-73693721:-|nuORF	REV__ENST00000422644.2_1_X:73693403-73693721:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	640.31201171875	2	640.312309	1278.61006	-0.42682	-0.0002733	-0.061703	-3.9509E-05	-0.48852	-0.00031281	640.3121782158619	36.837	0.36678	36.837	36.625	36.991	0					19	11	2	0	0	0	0.68382	1	14320	14320		29.17	6.5904	1	102850	+		48249	19089	32008	32139	48848	48848					-0.018096334175879747
VVCEYIVKK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))EYIVKK_	VVC(1)EYIVKK		VVC(140)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.3203735351562	2	569.32046	1136.62637	1.1407	0.0006494	-1.5406	-0.00087709	-0.39994	-0.00022769	569.3196774526573	24.091	0.38907	24.091	23.978	24.367	0					39	12	5	0	0	0	0.010494	1	7034	7034		139.97	67.091	1	2018900			48250	3666	32009	32140	48849	48849	156				0.06351815810808148
VVCEYIVKK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))EYIVKK_	VVC(1)EYIVKK		VVC(100)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	379.8827209472656	3	379.882732	1136.62637	0.76984	0.00029245	-1.7152	-0.00065159	-0.9454	-0.00035914	379.8823042508434	24.333	0.40774	24.333	24.236	24.643	0					31	9	6	0	0	0	0.037924	1	8165	8165		101.25	37.719	1	25176000			48251	3666	32009	32140	48850	48850	156				0.06351815810808148
VVCEYIVKK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))EYIVKK_	VVC(1)EYIVKK		VVC(170)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.3202514648438	2	569.32046	1136.62637	0.079836	4.5452E-05	-1.0157	-0.00057825	-0.93585	-0.0005328	569.319972165789	24.348	0.85801	24.348	24.161	25.019	0					46	20	4	0	0	0	0.0033339	1	8173	8173		166.68	89.361	1	18659000			48252	3666	32009	32140	48851	48851	156				0.06351815810808148
VVCEYIVKK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))EYIVKK_	VVC(1)EYIVKK		VVC(46)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.8824462890625	3	379.882732	1136.62637	3.528	0.0013402	-3.2127	-0.0012204	0.31531	0.00011978	379.8814741135483	24.1	0.14342	24.1	24.026	24.17	0					6	4	2	0	0	0	0.35021	1	7338	7338		45.972	8.1607	1	80698			48253	3666	32009	32140	48852	48852	156				0.06351815810808148
VVCEYIVKK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))EYIVKK_	VVC(1)EYIVKK		VVC(140)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.320556640625	2	569.32046	1136.62637	-0.27161	-0.00015463	0.33611	0.00019136	0.0645	3.6721E-05	569.3207545180505	24.113	0.30508	24.113	24.007	24.313	0					32	9	5	0	0	0	0.010494	1	7312	7312		139.97	77.863	1	1981700			48254	3666	32009	32140	48853	48853	156				0.06351815810808148
VVCEYIVKK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))EYIVKK_	VVC(1)EYIVKK		VVC(110)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.88262939453125	3	379.882732	1136.62637	0.22657	8.6071E-05	-0.25982	-9.87E-05	-0.033242	-1.2628E-05	379.88264913827123	24.318	0.31477	24.318	24.213	24.528	0					15	6	4	0	0	0	0.032052	1	8486	8486		107.01	45.316	1	1295200			48255	3666	32009	32140	48854	48854	156				0.06351815810808148
VVCEYIVKK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))EYIVKK_	VVC(1)EYIVKK		VVC(150)EYIVKK		0	1	0		ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3206176757812	2	569.32046	1136.62637	0.16738	9.5291E-05	-0.20819	-0.00011853	-0.040814	-2.3236E-05	569.3203816890428	24.334	0.85977	24.334	24.18	25.04	0					41	17	5	0	0	0	0.0061615	1	8491	8491		153.04	77.993	1	10586000			48256	3666	32009	32140	48855	48855	156				0.06351815810808148
VVCGGGLR	8	Unmodified	_VVCGGGLR_					0	0	0			REV__ENST00000392779.6_1_3:160821289-160823116:-|nuORF	REV__ENST00000392779.6_1_3:160821289-160823116:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	380.7104187011719	2	380.710348	759.406143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.504	1	14.504	14.004	15.004	0								0	0	0	1.7419	1	3151	3151		20.482	0	1		+		48257	18834	32010	32141	48856	48856					0.01681634993917669
VVCGTPLFK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))GTPLFK_	VVC(1)GTPLFK		VVC(64)GTPLFK		0	1	0		ENSG00000174099|ENST00000308259|MSRB3;nc|ENSG00000174099|Q8IXL7|MSRB3	ENSG00000174099|ENST00000308259|MSRB3	ENSG00000174099|ENST00000308259|MSRB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7815856933594	2	510.78097	1019.54739	0.98045	0.0005008	-0.26859	-0.00013719	0.71186	0.0003636	510.78090261076136	33.948	0.34821	33.948	33.806	34.154	0					16	9	2	0	0	0	0.17854	1	12585	12585		64.207	64.207	1	595310			48258	6470	32011	32142	48857	48857	275				0.0383958857653397
VVCGTPLFK	9	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))GTPLFK_	VVC(1)GTPLFK		VVC(55)GTPLFK		0	1	0		ENSG00000174099|ENST00000308259|MSRB3;nc|ENSG00000174099|Q8IXL7|MSRB3	ENSG00000174099|ENST00000308259|MSRB3	ENSG00000174099|ENST00000308259|MSRB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.78179931640625	2	510.78097	1019.54739	0.37096	0.00018948	-0.55687	-0.00028444	-0.18591	-9.4961E-05	510.7808166052557	33.927	0.3512	33.927	33.77	34.121	0					21	8	4	0	0	0	0.25716	1	13000	13000		54.776	12.302	1	541970			48259	6470	32011	32142	48858	48858	275				0.0383958857653397
VVCVEGIVTK	10	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))VEGIVTK_	VVC(1)VEGIVTK		VVC(94)VEGIVTK		0	1	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.3111572265625	2	552.310092	1102.60563	1.4596	0.00080615	-0.4783	-0.00026417	0.98131	0.00054199	552.3098628958596	33.463	0.30623	33.463	33.338	33.644	0					19	10	3	0	0	0	0.11048	1	10892	10892		93.598	54.345	1	304320			48260	2715	32012	32143	48859	48859	107				0.058432254311583165
VVCVEGIVTK	10	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))VEGIVTK_	VVC(1)VEGIVTK		VVC(130)VEGIVTK		0	1	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3106079101562	2	552.310092	1102.60563	1.8246	0.0010078	-1.3967	-0.00077142	0.42793	0.00023635	552.3094765166053	33.7	0.31239	33.7	33.58	33.893	0					25	8	4	0	0	0	0.01518	1	12495	12495		128.6	52.432	1	2234000			48261	2715	32012	32143	48860	48860	107				0.058432254311583165
VVCVEGIVTK	10	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))VEGIVTK_	VVC(1)VEGIVTK		VVC(78)VEGIVTK		0	1	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3109130859375	2	552.310092	1102.60563	0.46273	0.00025557	1.0012	0.00055296	1.4639	0.00080852	552.3104686594766	33.708	0.23306	33.708	33.618	33.851	0					8	6	2	0	0	0	0.20981	1	12911	12911		78.264	44.091	1	80293			48262	2715	32012	32143	48861	48861	107				0.058432254311583165
VVCVEGIVTK	10	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))VEGIVTK_	VVC(1)VEGIVTK		VVC(97)VEGIVTK		0	1	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	552.31103515625	2	552.310092	1102.60563	1.8009	0.00099465	-0.20421	-0.00011279	1.5967	0.00088187	552.3101938035701	33.471	0.20511	33.471	33.392	33.597	0					11	5	3	0	0	0	0.092915	1	11759	11759		96.665	47.129	1	242650			48263	2715	32012	32143	48862	48862	107				0.058432254311583165
VVCVEGIVTK	10	Carbamidomethyl (C)	_VVC(Carbamidomethyl (C))VEGIVTK_	VVC(1)VEGIVTK		VVC(140)VEGIVTK		0	1	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.3104248046875	2	552.310092	1102.60563	0.79531	0.00043926	-0.5067	-0.00027986	0.28861	0.0001594	552.309942282849	33.659	0.27549	33.659	33.549	33.825	0					21	6	5	0	0	0	0.010724	1	12803	12803		140.11	57.362	1	2593000			48264	2715	32012	32143	48863	48863	107				0.058432254311583165
VVDAAARPS	9	Unmodified	_VVDAAARPS_					0	0	0		ENST00000455168.5_1_3:5164021-5220395:+|nuORF;ENST00000429403.5_1_3:5164021-5170186:+|nuORF;ENST00000444332.1_1_3:5164021-5212295:+|nuORF	ENST00000455168.5_1_3:5164021-5220395:+|nuORF	ENST00000455168.5_1_3:5164021-5220395:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2436828613281	2	443.243067	884.47158	-0.247	-0.00010948	0.21854	9.6867E-05	-0.028462	-1.2616E-05	443.2433141500407	14.951	0.21382	14.951	14.797	15.011	0					7	4	2	0	0	0	0.50858	1	3980	3980		31.53	2.3803	1	79648			48265	9677	32013	32144	48864	48864					0.024723277206135208
VVDAHVREK	9	Unmodified	_VVDAHVREK_					0	0	0		ENST00000508808.1_1_5:64902931-64905219:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.7967529296875	2	526.795998	1051.57744	0.60085	0.00031653	-0.6092	-0.00032093	-0.0083531	-4.4004E-06	526.795813230886	15.04	0.086729	15.04	15.005	15.092	0					6	4	2	0	0	0	0.16806	1	3196	3196		65.465	23.069	1	47881			48266	2813	32014	32145	48865	48865					0.05371663566097595
VVDAHVREK	9	Unmodified	_VVDAHVREK_					0	0	0		ENST00000508808.1_1_5:64902931-64905219:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7962646484375	2	526.795998	1051.57744	0.10195	5.3704E-05	0.33226	0.00017503	0.4342	0.00022874	526.7961607983317	15.322	0.22155	15.322	15.269	15.49	0					7	5	2	0	0	0	0.076532	1	3940	3940		85.862	25.744	1	880690			48267	2813	32014	32145	48866	48866					0.05371663566097595
VVDAHVREK	9	Unmodified	_VVDAHVREK_					0	0	0		ENST00000508808.1_1_5:64902931-64905219:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.7954711914062	2	526.795998	1051.57744	0.50629	0.00026671	-0.05812	-3.0618E-05	0.44817	0.0002361	526.7949662762153	15.069	0.069571	15.069	15.028	15.097	0					8	3	3	0	0	0	0.36892	1	3371	3371		44.377	8.7589	1	74737			48268	2813	32014	32145	48867	48867					0.05371663566097595
VVDAHVREK	9	Unmodified	_VVDAHVREK_					0	0	0		ENST00000508808.1_1_5:64902931-64905219:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	ENST00000508808.1_1_5:64902931-64905219:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.7960815429688	2	526.795998	1051.57744	0.26231	0.00013819	0.23586	0.00012425	0.49817	0.00026243	526.7961189597377	15.314	0.15783	15.314	15.212	15.37	0					5	3	2	0	0	0	0.11411	1	4152	4152		76.17	28.512	1	514630			48269	2813	32014	32145	48868	48868					0.05371663566097595
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.3207702636719	2	501.321317	1000.62808	-0.044874	-2.2496E-05	-0.60226	-0.00030192	-0.64713	-0.00032442	501.3210146499214	16	0.1083	16	15.948	16.057	0					12	4	3	0	0	0	0.04067	1	3563	3563		98.582	21.264	1	691660			48270	1615	32015	32146	48869	48869					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	334.5498962402344	3	334.54997	1000.62808	0.65429	0.00021889	-0.95151	-0.00031833	-0.29722	-9.9435E-05	334.5496580281793	16.325	0.39584	16.325	16.236	16.632	0					17	9	4	0	0	0	0.16806	1	4409	4409		81.525	32.923	1	6762700			48271	1615	32015	32146	48870	48870					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.32110595703125	2	501.321317	1000.62808	-0.11244	-5.6368E-05	-0.19304	-9.6775E-05	-0.30548	-0.00015314	501.3212058319367	16.311	0.26742	16.311	16.225	16.492	0					11	6	2	0	0	0	0.0063888	1	4401	4401		152.06	53.431	1	4367600			48272	1615	32015	32146	48871	48871					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.550048828125	3	334.54997	1000.62808	-0.66773	-0.00022339	1.3811	0.00046204	0.71334	0.00023865	334.5503506633677	16.017	0.1222	16.017	15.982	16.104	0					8	4	3	0	0	0	0.33044	1	3763	3763		63.534	31.9	1	308320			48273	1615	32015	32146	48872	48872					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	501.32147216796875	2	501.321317	1000.62808	-0.96763	-0.00048509	1.8056	0.00090517	0.83794	0.00042008	501.3221022410776	16.017	0.1222	16.017	15.982	16.104	0					7	4	2	0	0	0	0.035106	1	3764	3764		104.01	47.293	1	246060			48274	1615	32015	32146	48873	48873					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.3211975097656	2	501.321317	1000.62808	-0.57453	-0.00028802	0.43031	0.00021572	-0.14422	-7.2301E-05	501.32143536318296	16.255	0.16704	16.255	16.196	16.363	0					7	3	3	0	0	0	0.020674	1	4619	4619		120.87	41.156	1	728440			48275	1615	32015	32146	48874	48874					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.5498046875	3	334.54997	1000.62808	-0.039491	-1.3212E-05	-0.3902	-0.00013054	-0.42969	-0.00014375	334.54975978984123	16.071	0.11339	16.071	15.992	16.106	0					8	3	3	0	0	0	0.33044	1	3724	3724		63.534	24.78	1	172110			48276	1615	32015	32146	48875	48875					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3212890625	2	501.321317	1000.62808	-2.106	-0.0010558	2.1546	0.0010802	0.048619	2.4374E-05	501.32246651162126	16.065	0.13897	16.065	15.985	16.124	0					9	4	3	0	0	0	0.070005	1	3717	3717		88.177	11.403	1	559640			48277	1615	32015	32146	48876	48876					0.1277919289109377
VVDAKTLKK	9	Unmodified	_VVDAKTLKK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant;XRCC5|p.E287Kfs*11|2|0.25|ENSG00000079246|chr2:216127589-216127589|A/-|frameshift_variant;ENST00000493706.1_1_2:216990646-216992426:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5499267578125	3	334.54997	1000.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.264	1	16.264	15.764	16.764	0								0	0	0	0.1633	1	4466	4466		72.879	31.453	1				48278	1615	32015	32146	48877	48877					0.1277919289109377
VVDASFFLK	9	Unmodified	_VVDASFFLK_					0	0	0		ENST00000507860.1_1_5:138629450-138650445:+|nuORF;ENST00000513121.1_1_5:138629450-138650445:+|nuORF;ENST00000512876.5_1_5:138629414-138653336:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.288330078125	2	513.286943	1024.55933	1.4457	0.00074206	-0.38614	-0.0001982	1.0596	0.00054386	513.2867923146292	46.106	0.12033	46.106	46.061	46.182	0					7	5	2	0	0	0	0.19605	1	18457	18457		62.107	23.301	1	44576			48279	10205	32016	32147	48878	48878					0.04803528591378381
VVDCGTGYTK	10	Carbamidomethyl (C)	_VVDC(Carbamidomethyl (C))GTGYTK_	VVDC(1)GTGYTK		VVDC(150)GTGYTK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000115091|ENST00000263238|ACTR3	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.258544921875	2	550.258056	1098.50156	1.6904	0.00093014	-0.57189	-0.00031469	1.1185	0.00061546	550.2576188482368	20.419	0.46783	20.419	20.314	20.781	0					17	9	4	0	0	0	0.0087281	1	6625	6625		148.69	93.914	1	1442300			48280	42	32017	32148	48879	48879	1				-0.04375101396362879
VVDCGTGYTK	10	Carbamidomethyl (C)	_VVDC(Carbamidomethyl (C))GTGYTK_	VVDC(1)GTGYTK		VVDC(67)GTGYTK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000115091|ENST00000263238|ACTR3	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.2593383789062	2	550.258056	1098.50156	1.1541	0.00063506	1.1533	0.00063461	2.3074	0.0012697	550.258729159664	20.271	0.14618	20.271	20.22	20.366	0					5	3	2	0	0	0	0.30252	1	5680	5680		66.962	30.515	1	87487			48281	42	32017	32148	48880	48880	1				-0.04375101396362879
VVDCGTGYTK	10	Carbamidomethyl (C)	_VVDC(Carbamidomethyl (C))GTGYTK_	VVDC(1)GTGYTK		VVDC(94)GTGYTK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000115091|ENST00000263238|ACTR3	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2586059570312	2	550.258056	1098.50156	1.8162	0.00099939	0.08812	4.8489E-05	1.9043	0.0010479	550.2577127122553	20.435	0.46564	20.435	20.328	20.793	0					18	9	3	0	0	0	0.10583	1	6501	6501		94.409	48.437	1	1213400			48282	42	32017	32148	48881	48881	1				-0.04375101396362879
VVDCGTGYTK	10	Carbamidomethyl (C)	_VVDC(Carbamidomethyl (C))GTGYTK_	VVDC(1)GTGYTK		VVDC(100)GTGYTK		0	1	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000115091|ENST00000263238|ACTR3	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.2584838867188	2	550.258056	1098.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.444	1	20.444	19.944	20.944	0								0	0	0	0.0085021	1	6494	6494		104.42	47.99	1				48283	42	32017	32148	48882	48882	1				-0.04375101396362879
VVDCGYQCNA	10	Carbamidomethyl (C)	_VVDCGYQC(Carbamidomethyl (C))NA_	VVDC(0.083)GYQC(0.917)NA		VVDC(-10)GYQC(10)NA		0	1	0			REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.7281494140625	2	564.726066	1127.43758	0.16251	9.1775E-05	2.9993	0.0016938	3.1618	0.0017856	564.7279880320178	16.455	0.16663	16.455	16.396	16.563	0					8	3	3	0	0	0	0.44601	1	4715	4715		51.193	8.7966	2	1206500	+		48284	16275	32018	32149	48883	48883	579				-0.12104204824959197
VVDEKISAMGK	11	Unmodified	_VVDEKISAMGK_					0	0	0		ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.8810729980469	3	392.88128	1175.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.054	1	24.054	23.554	24.554	0								0	0	0	0.32536	1	7308	7308		48.602	14.68	1				48285	5995	32019	32150	48884	48884					0.041223065972417317
VVDENAVAK	9	Unmodified	_VVDENAVAK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.7563781738281	2	472.756007	943.497461	-0.026445	-1.2502E-05	0.44933	0.00021242	0.42288	0.00019992	472.75627030023816	19.571	0.18957	19.571	19.492	19.682	0					9	5	2	0	0	0	0.035062	1	5080	5080		104.06	43.085	1	407470			48286	7385;7975	32020	32151	48885	48885					0.023451771722307058
VVDENAVAK	9	Unmodified	_VVDENAVAK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7555236816406	2	472.756007	943.497461	0.64693	0.00030584	-1.4011	-0.00066236	-0.75413	-0.00035652	472.7552381512936	19.894	0.21019	19.894	19.795	20.005	0					8	4	3	0	0	0	0.11411	1	6094	6094		76.17	21.393	1	361520			48287	7385;7975	32020	32151	48886	48886					0.023451771722307058
VVDENAVAK	9	Unmodified	_VVDENAVAK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7556457519531	2	472.756007	943.497461	-0.12256	-5.7943E-05	-0.60653	-0.00028674	-0.72909	-0.00034468	472.7556709534864	19.783	0.21796	19.783	19.676	19.894	0					13	4	4	0	0	0	0.019258	1	6298	6298		123.21	55.714	1	4960000			48288	7385;7975	32020	32151	48887	48887					0.023451771722307058
VVDENAVAK	9	Unmodified	_VVDENAVAK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.75640869140625	2	472.756007	943.497461	-0.15277	-7.2225E-05	0.23297	0.00011014	0.080192	3.7911E-05	472.75617883946137	19.636	0.22601	19.636	19.505	19.731	0					10	5	3	0	0	0	0.019258	1	5361	5361		123.21	35.454	1	462990			48289	7385;7975	32020	32151	48888	48888					0.023451771722307058
VVDENAVAK	9	Unmodified	_VVDENAVAK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A;ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7557373046875	2	472.756007	943.497461	-0.57431	-0.00027151	-0.029407	-1.3902E-05	-0.60371	-0.00028541	472.75593604175424	19.799	0.27067	19.799	19.69	19.961	0					17	5	5	0	0	0	0.0047071	1	6169	6169		159.28	66.08	1	3591100			48290	7385;7975	32020	32151	48889	48889					0.023451771722307058
VVDEQALWHG	10	Unmodified	_VVDEQALWHG_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-3|SPG11	REV__nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.19268798828125	3	385.192734	1152.55637	3.218	0.0012395	-4.0779	-0.0015708	-0.85994	-0.00033124	385.1915997603997	20.268	0.26579	20.268	20.111	20.377	0					15	5	4	0	0	0	0.60281	1	6422	6422		33.922	3.3528	1	1135900	+		48291	13711	32021	32152	48890	48890					-0.013803465334376597
VVDGRRLAL	9	Unmodified	_VVDGRRLAL_					0	0	0			REV__SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant	REV__SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8087158203125	2	499.808908	997.603263	0.87801	0.00043884	-1.1211	-0.00056032	-0.24306	-0.00012148	499.8082865065895	25.594	0.31147	25.594	25.392	25.704	0					8	6	2	0	0	0	0.25716	1	9116	9116		30.504	5.0535	1	1185300	+		48292	17579	32022	32153	48891	48891					0.10436557808350244
VVDIPFRSK	9	Unmodified	_VVDIPFRSK_					0	0	0		nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.811279296875	2	530.811116	1059.60768	0.11767	6.2458E-05	0.85995	0.00045647	0.97761	0.00051893	530.8114226225139	30.83	0.22438	30.83	30.73	30.955	0					9	5	2	0	0	0	0.14578	1	11167	11167		52.937	0	1	390730			48293	1657	32023	32154	48892	48892					0.0802602223127451
VVDIPFRSK	9	Unmodified	_VVDIPFRSK_					0	0	0		nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8114013671875	2	530.811116	1059.60768	0.28734	0.00015252	-0.15833	-8.4046E-05	0.12901	6.8478E-05	530.811009982766	30.807	0.18933	30.807	30.708	30.897	0					7	4	2	0	0	0	0.24169	1	11541	11541		49.536	0	1	206280			48294	1657	32023	32154	48893	48893					0.0802602223127451
VVDIPFRSK	9	Unmodified	_VVDIPFRSK_					0	0	0		nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	354.2096862792969	3	354.209836	1059.60768	-0.082827	-2.9338E-05	0.036696	1.2998E-05	-0.046131	-1.634E-05	354.2098561102719	30.589	0.16285	30.589	30.504	30.667	0					9	4	3	0	0	0	0.46194	1	10448	10448		36.447	6.129	1	68467			48295	1657	32023	32154	48894	48894					0.0802602223127451
VVDKIKGVF	9	Unmodified	_VVDKIKGVF_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.8147888183594	2	502.810585	1003.60662	2.9273	0.0014719	4.1864	0.002105	7.1137	0.0035768	502.8127924988285	54.692	0.088295	54.692	54.64	54.728	0					9	5	2	0	0	0	0.5879	1	20833	20833		23.042	0	1	76701	+		48296	17155	32024	32155	48895	48895					0.10495807862389483
VVDKIPKAIH	10	Unmodified	_VVDKIPKAIH_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	373.9009094238281	3	373.901003	1118.68118	0.75001	0.00028043	-0.84643	-0.00031648	-0.096421	-3.6052E-05	373.90067692079487	23.724	0.21081	23.724	23.619	23.829	0					8	4	2	0	0	0	0.6796	1	8099	8099		24.519	0.28737	1	398620	+		48297	16808	32025	32156	48896	48896					0.1265857067376146
VVDKNPQESVL	11	Unmodified	_VVDKNPQESVL_					0	0	0			REV__KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	REV__KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.8914794921875	3	409.890832	1226.65067	0.1198	4.9107E-05	0.8374	0.00034324	0.95721	0.00039235	409.8913383675019	14.668	0.12501	14.668	14.584	14.709	0					7	4	2	0	0	0	0.70921	1	3156	3156		26.75	1.6237	1	70803	+		48298	14475	32026	32157	48897	48897					0.04640747498046949
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(120)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	533.737060546875	2	533.736434	1065.45831	1.1097	0.00059231	-0.91899	-0.0004905	0.19075	0.00010181	533.7362897558075	17.771	0.31731	17.771	17.693	18.01	0					24	8	5	0	0	0	0.026945	1	4296	4296		120.27	40.822	1	2851100			48299	1545	32027	32158	48898	48898	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(140)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7365112304688	2	533.736434	1065.45831	2.2943	0.0012246	-2.3422	-0.0012501	-0.047942	-2.5588E-05	533.7353746595916	18.041	0.5882	18.041	17.942	18.53	0					34	13	6	0	0	0	0.010125	1	5213	5213		142.36	62.91	1	16027000			48300	1545	32027	32158	48899	48899	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(130)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7367553710938	2	533.736434	1065.45831	-0.48205	-0.00025729	0.63856	0.00034082	0.15651	8.3535E-05	533.7370458845222	17.791	0.23296	17.791	17.691	17.924	0					22	6	5	0	0	0	0.019261	1	4512	4512		125.71	48.939	1	2158600			48301	1545	32027	32158	48900	48900	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(170)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7366943359375	2	533.736434	1065.45831	1.756	0.00093722	-2.0025	-0.0010688	-0.24653	-0.00013158	533.7356876935723	17.996	0.52462	17.996	17.836	18.361	0					28	10	6	0	0	0	0.0049346	1	5455	5455		166.07	86.62	1	13591000			48302	1545	32027	32158	48901	48901	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(120)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7366333007812	2	533.736434	1065.45831	2.0493	0.0010938	-1.4617	-0.00078016	0.58761	0.00031363	533.7358670156713	17.842	0.18983	17.842	17.751	17.941	0					12	4	4	0	0	0	0.026945	1	4543	4543		120.27	56.065	1	593530			48303	1545	32027	32158	48902	48902	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(150)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7367553710938	2	533.736434	1065.45831	1.1167	0.00059603	-0.96045	-0.00051263	0.15627	8.3405E-05	533.7361839793809	17.825	0.32995	17.825	17.737	18.067	0					22	7	5	0	0	0	0.0077833	1	4535	4535		154.01	77.237	1	2303700			48304	1545	32027	32158	48903	48903	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(64)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7371215820312	2	533.736434	1065.45831	-1.3098	-0.00069909	1.6672	0.00088986	0.35743	0.00019077	533.737435584623	17.859	0.1389	17.859	17.768	17.907	0					6	3	2	0	0	0	0.3337	1	4532	4532		63.534	12.198	1	96522			48305	1545	32027	32158	48904	48904	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(100)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7366333007812	2	533.736434	1065.45831	0.7132	0.00038066	-0.71246	-0.00038027	0.00073329	3.9139E-07	533.7363536492816	18.036	0.30705	18.036	17.883	18.19	0					19	6	5	0	0	0	0.06456	1	5304	5304		104.42	54.982	1	4489900			48306	1545	32027	32158	48905	48905	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(120)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7366333007812	2	533.736434	1065.45831	1.81	0.00096606	-2.1514	-0.0011483	-0.34141	-0.00018222	533.7356033034932	18.018	0.80396	18.018	17.915	18.719	0					34	16	6	0	0	0	0.026945	1	5299	5299		120.27	61.491	1	22729000			48307	1545	32027	32158	48906	48906	63				-0.07179614445294646
VVDNGSGMCK	10	Carbamidomethyl (C)	_VVDNGSGMC(Carbamidomethyl (C))K_	VVDNGSGMC(1)K		VVDNGSGMC(67)K		0	1	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7368774414062	2	533.736434	1065.45831	3.389	0.0018088	-2.9723	-0.0015864	0.41663	0.00022237	533.7351611749557	18.001	0.16152	18.001	17.947	18.109	0					8	3	3	0	0	0	0.30252	1	5318	5318		66.962	27.709	1	612090			48308	1545	32027	32158	48907	48907	63				-0.07179614445294646
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.2255554199219	2	505.225702	1008.43685	0.71356	0.00036051	-1.1555	-0.00058378	-0.44192	-0.00022327	505.2254421438228	19.405	0.41749	19.405	19.297	19.715	0					34	12	5	0	0	0	0.010919	1	5007	5007		139.38	70.595	1	1281000			48309	1545	32027	32159	48908	48908					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.2257995605469	2	505.225702	1008.43685	0.80536	0.00040689	-1.3532	-0.00068368	-0.54786	-0.00027679	505.2254744553629	19.749	1.0982	19.749	19.616	20.714	0					63	24	6	0	0	0	0.012356	1	6005	6005		133.99	67.564	1	11937000			48310	1545	32027	32159	48909	48909					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2254333496094	2	505.225702	1008.43685	-0.77289	-0.00039048	0.43991	0.00022225	-0.33297	-0.00016823	505.22623882999034	19.417	0.31357	19.417	19.312	19.626	0					21	9	4	0	0	0	0.30252	1	5245	5245		66.962	15.769	1	683830			48311	1545	32027	32159	48910	48910					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.22564697265625	2	505.225702	1008.43685	0.11954	6.0397E-05	-1.2137	-0.00061321	-1.0942	-0.00055282	505.2253964204566	19.634	0.81768	19.634	19.479	20.297	0					44	16	5	0	0	0	0.16745	1	6207	6207		83.647	24.865	1	4811300			48312	1545	32027	32159	48911	48911					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.2257995605469	2	505.225702	1008.43685	1.0588	0.00053496	-1.6952	-0.00085644	-0.63633	-0.00032149	505.2253552927826	19.617	0.56883	19.617	19.511	20.079	0					32	11	5	0	0	0	0.10583	1	6241	6241		94.409	41.472	1	4770400			48313	1545	32027	32159	48912	48912					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.225830078125	2	505.225702	1008.43685	0.10605	5.3582E-05	-0.43405	-0.00021929	-0.328	-0.00016571	505.2257830767078	19.471	0.32052	19.471	19.369	19.689	0					18	7	3	0	0	0	0.023179	1	5303	5303		122.94	56.51	1	1571100			48314	1545	32027	32159	48913	48913					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.2255554199219	2	505.225702	1008.43685	0.11023	5.5692E-05	-1.0146	-0.0005126	-0.90436	-0.00045691	505.22563772624056	19.454	0.43784	19.454	19.356	19.794	0					23	10	4	0	0	0	0.030824	1	5295	5295		117.53	51.096	1	1290500			48315	1545	32027	32159	48914	48914					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2261962890625	2	505.225702	1008.43685	-0.31114	-0.0001572	-0.23379	-0.00011812	-0.54493	-0.00027531	505.225986183423	19.647	1.3182	19.647	19.492	20.811	0					61	26	6	0	0	0	0.0074017	1	6097	6097		156.16	84.283	1	10036000			48316	1545	32027	32159	48915	48915					-0.06702999473998261
VVDNGSGMCK	10	Unmodified	_VVDNGSGMCK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.2253723144531	2	505.225702	1008.43685	1.2315	0.0006222	-1.1837	-0.00059806	0.04778	2.414E-05	505.2255539260916	19.631	0.919	19.631	19.524	20.443	0					53	18	5	0	0	0	0.01554	1	6090	6090		128.35	61.919	1	14738000			48317	1545	32027	32159	48916	48916					-0.06702999473998261
VVDNGSGMCK	10	Oxidation (M)	_VVDNGSGM(Oxidation (M))CK_		VVDNGSGM(1)CK		VVDNGSGM(82)CK	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.223388671875	2	513.223159	1024.43177	1.0978	0.00056341	-1.5452	-0.00079301	-0.44738	-0.00022961	513.2227098308973	14.696	0.29744	14.696	14.616	14.913	0					15	7	3	0	0	0	0.18316	1	3647	3647		81.525	26.021	1	305900			48318	1545	32027	32160	48917	48917		74			-0.0794730333662983
VVDNGSGMCK	10	Oxidation (M)	_VVDNGSGM(Oxidation (M))CK_		VVDNGSGM(1)CK		VVDNGSGM(100)CK	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2232666015625	2	513.223159	1024.43177	0.089051	4.5703E-05	-0.62576	-0.00032115	-0.5367	-0.00027545	513.2229110872136	14.619	0.27005	14.619	14.558	14.828	0					11	5	4	0	0	0	0.071575	1	3689	3689		102.06	41.09	1	289900			48319	1545	32027	32160	48918	48918		74			-0.0794730333662983
VVDNGSGMCK	10	Carbamidomethyl (C),Oxidation (M)	_VVDNGSGM(Oxidation (M))C(Carbamidomethyl (C))K_	VVDNGSGMC(1)K	VVDNGSGM(1)CK	VVDNGSGMC(150)K	VVDNGSGM(150)CK	0	1	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000418351.1_1_15:44282253-44282364:-|nuORF;ACTBL2|p.R29Gfs*7|1|0.37|ENSG00000169067|chr5:57482623-57482623|G/-|frameshift_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7342529296875	2	541.733891	1081.45323	2.0292	0.0010993	-2.1806	-0.0011813	-0.15138	-8.2009E-05	541.7332228067448	13.549	0.4859	13.549	13.505	13.991	0					17	10	4	0	0	0	0.0093015	1	3333	3333		145.46	65.748	1	500810			48320	1545	32027	32161	48919	48919	63	74			-0.08423918307903477
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7822875976562	2	517.781167	1033.54778	1.3798	0.00071442	0.4946	0.0002561	1.8744	0.00097051	517.7814772352359	27.574	0.22536	27.574	27.468	27.694	0					16	7	3	0	0	0	0.047855	1	8508	8508		96.034	32.727	1	289400			48321	7354;23071	32028	32162	48920	48920					0.03234963505747146
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.7816772460938	2	517.781167	1033.54778	1.3151	0.00068094	-0.91728	-0.00047495	0.39784	0.00020599	517.7808565486732	27.836	0.30952	27.836	27.706	28.015	0					23	7	5	0	0	0	0.00065248	1	9762	9762		186.41	85.158	1	2270300			48322	7354;23071	32028	32162	48921	48921					0.03234963505747146
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.7811889648438	2	517.781167	1033.54778	0.072283	3.7427E-05	-0.043364	-2.2453E-05	0.02892	1.4974E-05	517.7813480788313	27.585	0.21801	27.585	27.495	27.713	0					16	7	4	0	0	0	0.061298	1	8797	8797		91.265	29.158	1	361660			48323	7354;23071	32028	32162	48922	48922					0.03234963505747146
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.781494140625	2	517.781167	1033.54778	1.5439	0.00079938	-1.2557	-0.00065017	0.28817	0.00014921	517.7805816276356	27.809	0.31517	27.809	27.697	28.012	0					15	6	3	0	0	0	0.0043467	1	10125	10125		160.82	75.661	1	2215400			48324	7354;23071	32028	32162	48923	48923					0.03234963505747146
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7815551757812	2	517.781167	1033.54778	1.238	0.00064102	0.27881	0.00014436	1.5168	0.00078538	517.78139131792	27.638	0.13945	27.638	27.549	27.688	0					9	3	3	0	0	0	0.052435	1	9059	9059		94.409	27.447	1	172430			48325	7354;23071	32028	32162	48924	48924					0.03234963505747146
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7817993164062	2	517.781167	1033.54778	0.91358	0.00047303	0.82113	0.00042517	1.7347	0.0008982	517.781485035082	27.621	0.17733	27.621	27.536	27.713	0					7	4	2	0	0	0	0.032181	1	9069	9069		106.88	37.253	1	384180			48326	7354;23071	32028	32162	48925	48925					0.03234963505747146
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.78125	2	517.781167	1033.54778	0.23836	0.00012342	-0.19166	-9.9237E-05	0.046705	2.4183E-05	517.7810698874941	27.772	0.21668	27.772	27.662	27.878	0					14	4	4	0	0	0	0.0021879	1	9988	9988		173.39	82.791	1	1832200			48327	7354;23071	32028	32162	48926	48926					0.03234963505747146
VVDQTTLMK	9	Unmodified	_VVDQTTLMK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.78076171875	2	517.781167	1033.54778	1.5655	0.00081059	-2.1254	-0.0011005	-0.55994	-0.00028993	517.7801860467389	27.756	0.31428	27.756	27.645	27.959	0					15	6	3	0	0	0	0.0071744	1	9979	9979		148.69	74.435	1	2913100			48328	7354;23071	32028	32162	48927	48927					0.03234963505747146
VVDSNDIYY	9	Unmodified	_VVDSNDIYY_					0	0	0			REV__tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	REV__tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2560424804688	2	544.250754	1086.48696	1.976	0.0010755	-0.79175	-0.00043091	1.1843	0.00064454	544.2516889617815	34.416	0.57942	34.416	34.044	34.624	0					20	14	2	0	0	0	0.2873	1	13164	13164		51.335	1.8939	1	254230	+		48329	21851	32029	32163	48928	48928					-0.05282850272851647
VVDYPNSAK	9	Unmodified	_VVDYPNSAK_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000487006.2_1_7:73101416-73107745:+|nuORF;ENST00000421744.5_1_7:73101164-73110778:+|nuORF;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7558898925781	2	496.756007	991.497461	0.14926	7.4144E-05	-0.8412	-0.00041787	-0.69194	-0.00034373	496.75559307380723	21.441	0.24096	21.441	21.343	21.584	0					15	5	4	0	0	0	0.25761	1	6210	6210		54.722	13.944	1	539290			48330	1474	32030	32164	48929	48929					0.0013717717223471482
VVDYVMYR	8	Oxidation (M)	_VVDYVM(Oxidation (M))YR_		VVDYVM(1)YR		VVDYVM(41)YR	0	0	1			REV__nc|ENSG00000165506|Q9NVR5-2|DNAAF2	REV__nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	354.1771545410156	3	354.175915	1059.50592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.411	1	13.411	12.911	13.911	0								0	0	0	1.7419	1	3048	3048		40.573	11.423	1		+		48331	16045	32031	32165	48930	48930		615			-0.02145592182796463
VVEEEENKYKV	11	Unmodified	_VVEEEENKYKV_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	682.8948974609375	2	683.348457	1364.68236	-1.6551	-0.001131	2.3718	0.0016207	0.71672	0.00048977	683.3497330658557	40.023	0.19462	40.023	39.946	40.141	0					8	6	2	0	0	0	0.62108	1	15737	15737		35.152	1.2304	1	39695	+		48332	13037	32032	32166	48931	48931					0.014606954613100243
VVEEGSKNIR	10	Unmodified	_VVEEGSKNIR_					0	0	0		nc|ENSG00000110435|O00330-3|PDHX;ENSG00000110435|ENST00000227868|PDHX	nc|ENSG00000110435|O00330-3|PDHX	nc|ENSG00000110435|O00330-3|PDHX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.8134155273438	2	565.811845	1129.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.883	1	29.883	29.383	30.383	0								0	0	0	0.41967	1	9468	9468		24.519	0	1				48333	2626	32033	32167	48932	48932					0.049516115293727125
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;GDI1|p.G114D|1|0.12|ENSG00000203879|chrX:154439093-154439093|G/A|missense_variant	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	514.277587890625	2	514.276575	1026.5386	1.2651	0.00065061	0.024611	1.2657E-05	1.2897	0.00066326	514.276411514809	31.318	0.22604	31.318	31.227	31.453	0					13	9	2	0	0	0	0.25716	1	10048	10048		54.776	5.3348	1	192120			48334	7661	32034	32168	48933	48933					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;GDI1|p.G114D|1|0.12|ENSG00000203879|chrX:154439093-154439093|G/A|missense_variant	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.2767944335938	2	514.276575	1026.5386	1.1471	0.00058992	-0.93139	-0.00047899	0.21569	0.00011093	514.2760573905324	31.576	0.25707	31.576	31.49	31.747	0					14	6	3	0	0	0	0.056004	1	11500	11500		93.143	32.171	1	1014300			48335	7661	32034	32168	48934	48934					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;GDI1|p.G114D|1|0.12|ENSG00000203879|chrX:154439093-154439093|G/A|missense_variant	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.276611328125	2	514.276575	1026.5386	1.3532	0.0006959	-0.52916	-0.00027214	0.824	0.00042376	514.2761294239947	31.563	0.38271	31.563	31.381	31.764	0					16	8	3	0	0	0	0.22837	1	11927	11927		58.23	4.8785	1	1093200			48336	7661	32034	32168	48935	48935					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;GDI1|p.G114D|1|0.12|ENSG00000203879|chrX:154439093-154439093|G/A|missense_variant	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.276611328125	2	514.276575	1026.5386	0.61519	0.00031638	-0.73658	-0.00037881	-0.12139	-6.2429E-05	514.2761813131054	31.348	0.17957	31.348	31.266	31.446	0					8	4	2	0	0	0	0.11898	1	10793	10793		75.043	21.692	1	174110			48337	7661	32034	32168	48936	48936					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;GDI1|p.G114D|1|0.12|ENSG00000203879|chrX:154439093-154439093|G/A|missense_variant	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.2772216796875	2	514.276575	1026.5386	-1.6106	-0.00082827	3.1913	0.0016412	1.5807	0.00081291	514.2779203108528	31.337	0.1876	31.337	31.287	31.475	0					6	4	2	0	0	0	0.33044	1	10787	10787		47.657	7.0847	1	98548			48338	7661	32034	32168	48937	48937					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;GDI1|p.G114D|1|0.12|ENSG00000203879|chrX:154439093-154439093|G/A|missense_variant	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2766723632812	2	514.276575	1026.5386	0.11909	6.1245E-05	0.16969	8.7266E-05	0.28878	0.00014851	514.2765806446743	31.529	0.31474	31.529	31.42	31.735	0					10	6	2	0	0	0	0.0406	1	11806	11806		98.629	24.655	1	984400			48339	7661	32034	32168	48938	48938					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;GDI1|p.G114D|1|0.12|ENSG00000203879|chrX:154439093-154439093|G/A|missense_variant	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	514.2772216796875	2	514.276575	1026.5386	1.4717	0.00075687	-1.1152	-0.00057353	0.35651	0.00018334	514.27600441818	31.545	0.46647	31.545	31.403	31.869	0					14	9	2	0	0	0	0.085655	1	11797	11797		82.75	13.964	1	1024700			48340	7661	32034	32168	48939	48939					0.026389382117031346
VVEKGATYYL	10	Unmodified	_VVEKGATYYL_					0	0	0			REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant	REV__EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.8070678710938	2	571.808239	1141.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.4	1	41.4	40.9	41.9	0								0	0	0	0.38797	1	15735	15735		34.173	6.0911	1		+		48341	12797	32035	32169	48940	48940					0.036788789289630586
VVEKPQPKK	9	Unmodified	_VVEKPQPKK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.8272705078125	2	526.826766	1051.63898	0.10185	5.3656E-05	0.70179	0.00036972	0.80363	0.00042337	526.8271244809059	13.621	0.18332	13.621	13.482	13.665	0					8	5	2	0	0	0	0.17854	1	3149	3149		64.207	21.811	1	172920			48342	7482	32036	32170	48941	48941					0.11522595265364544
VVEKPQPKK	9	Unmodified	_VVEKPQPKK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.8270874023438	2	526.826766	1051.63898	1.7608	0.00092761	-1.6236	-0.00085536	0.13716	7.2259E-05	526.8261592508361	13.6	0.328	13.6	13.376	13.704	0					17	7	4	0	0	0	0.034359	1	3356	3356		104.75	33.451	1	658700			48343	7482	32036	32170	48942	48942					0.11522595265364544
VVEKPQPKK	9	Unmodified	_VVEKPQPKK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.827880859375	2	526.826766	1051.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.433	1	13.433	12.933	13.933	0								0	0	0	0.21054	1	2698	2698		49.442	5.3247	1				48344	7482	32036	32170	48943	48943					0.11522595265364544
VVEKPQPKK	9	Unmodified	_VVEKPQPKK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.8272705078125	2	526.826766	1051.63898	1.6283	0.00085784	-1.1877	-0.0006257	0.44065	0.00023215	526.8262320612462	13.541	0.24107	13.541	13.38	13.621	0					15	5	4	0	0	0	0.056004	1	3166	3166		93.143	5.3889	1	290310			48345	7482	32036	32170	48944	48944					0.11522595265364544
VVEKVMGVSL	10	Oxidation (M)	_VVEKVM(Oxidation (M))GVSL_		VVEKVM(1)GVSL		VVEKVM(57)GVSL	0	0	1			REV__nc|ENSG00000119508|Q92570-2|NR4A3	REV__nc|ENSG00000119508|Q92570-2|NR4A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.8060302734375	2	538.804642	1075.59473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.612	1	13.612	13.112	14.112	0								0	0	0	0.26105	1	3353	3353		56.721	9.0637	1		+		48346	20995	32037	32171	48945	48945		755			0.0599582305687818
VVELTIKR	8	Unmodified	_VVELTIKR_					0	0	0			REV__nc|ENSG00000170381|O15041-2|SEMA3E	REV__nc|ENSG00000170381|O15041-2|SEMA3E	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.3076171875	2	479.30821	956.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.14	1	20.14	19.64	20.64	0								0	0	0	1.7419	1	5606	5606		33.516	3.0119	1		+		48347	16362	32038	32172	48946	48946					0.12182923719615246
VVESGEDIVL	10	Unmodified	_VVESGEDIVL_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2841186523438	2	530.282054	1058.54956	5.1729	0.0027431	-0.45061	-0.00023895	4.7222	0.0025041	530.2819565338858	17.622	0.26632	17.622	17.448	17.715	0					26	8	4	0	0	0	0.42631	1	4409	4409		53.351	7.3995	1	639530			48348	8049	32039	32173	48947	48947					0.02262295795344471
VVESKNVAL	9	Unmodified	_VVESKNVAL_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.7817077636719	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.144	1	32.144	31.644	32.644	0								0	0	0	0.1633	1	10710	10710		56.721	3.7844	1				48349	2464	32040	32174	48948	48948					0.06902340586009359
VVETVVEEYS	10	Unmodified	_VVETVVEEYS_					0	0	0			REV__ENST00000485351.1_1_10:44141510-44141681:-|nuORF	REV__ENST00000485351.1_1_10:44141510-44141681:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	385.1925048828125	3	385.192288	1152.55504	0.54313	0.00020921	-0.29978	-0.00011547	0.24335	9.3735E-05	385.1921994714875	20	0.073034	20	19.97	20.043	0					4	2	2	0	0	0	0.72769	1	5286	5286		17.468	17.468	1	132640	+		48350	18886	32041	32175	48949	48949					-0.015140254128482411
VVETVVEEYS	10	Unmodified	_VVETVVEEYS_					0	0	0			REV__ENST00000485351.1_1_10:44141510-44141681:-|nuORF	REV__ENST00000485351.1_1_10:44141510-44141681:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	385.1923828125	3	385.192288	1152.55504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.105	1	20.105	19.605	20.605	0								0	0	0	0.4201	1	5591	5591		23.523	0.94304	1		+		48351	18886	32041	32175	48950	48950					-0.015140254128482411
VVFAALSVW	9	Unmodified	_VVFAALSVW_					0	0	0			REV__nc|ENSG00000170262|Q8TCY5-2|MRAP	REV__nc|ENSG00000170262|Q8TCY5-2|MRAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.28546142578125	2	496.284203	990.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.752	1	40.752	40.252	41.252	0								0	0	0	0.27166	1	16059	16059		40.573	1.5511	1		+		48352	16358	32042	32176	48951	48951					0.0581984979957042
VVFGKEISGE	10	Unmodified	_VVFGKEISGE_					0	0	0		ENST00000329073.8_1_12:132627816-132627993:-|nuORF	ENST00000329073.8_1_12:132627816-132627993:-|nuORF	ENST00000329073.8_1_12:132627816-132627993:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.7854614257812	2	532.784764	1063.55498	0.12851	6.8466E-05	1.3038	0.00069464	1.4323	0.00076311	532.7857918762544	32.259	0.17428	32.259	32.167	32.342	0					6	4	2	0	0	0	0.43008	1	11835	11835		52.937	1.6012	1	145150			48353	8663	32043	32177	48952	48952					0.025740193778119647
VVFLFPFF	8	Unmodified	_VVFLFPFF_					0	0	0			REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2892150878906	2	508.286214	1014.55788	1.3146	0.0006682	4.1744	0.0021218	5.489	0.00279	508.2881116687496	34.17	0.20856	34.17	34.085	34.294	0					8	4	3	0	0	0	0.42924	1	13070	13070		67.327	12.433	1	361990	+		48354	20430	32044	32178	48953	48953					0.051179392932795054
VVFLLSNDV	9	Unmodified	_VVFLLSNDV_					0	0	0		ENST00000475124.1_1_3:53892553-53899332:+|nuORF;ENSG00000056736|ENST00000288167|IL17RB	ENST00000475124.1_1_3:53892553-53899332:+|nuORF	ENST00000475124.1_1_3:53892553-53899332:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.2840270996094	2	503.2844	1004.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.819	1	13.819	13.319	14.319	0								0	0	0	0.28996	1	2757	2757		37.159	5.2042	1				48355	1291	32045	32179	48954	48954					0.0521522472874949
VVFPNAKVK	9	Unmodified	_VVFPNAKVK_					0	0	0		tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	334.54150390625	3	334.542927	1000.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.351	1	14.351	13.851	14.851	0								0	0	0	0.2591	1	3024	3024		42.396	9.5837	1				48356	22567	32046	32180	48955	48955					0.10667227582234773
VVFVTRKK	8	Unmodified	_VVFVTRKK_					0	0	0		nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-6|APAF1	nc|ENSG00000120868|O14727-5|APAF1	nc|ENSG00000120868|O14727-5|APAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.8189392089844	2	488.818744	975.622936	-0.02472	-1.2083E-05	-0.31479	-0.00015388	-0.33951	-0.00016596	488.81875620172144	17.796	0.12114	17.796	17.72	17.841	0					5	3	2	0	0	0	0.53424	1	4309	4309		56.721	5.3856	1	122040			48357	180	32047	32181	48956	48956					0.13414933819126418
VVFVVDSHIG	10	Unmodified	_VVFVVDSHIG_					0	0	0			REV__ABTB1|p.P318Qfs*36|2|0.4|ENSG00000114626|chr3:127677762-127677762|C/-|frameshift_variant	REV__ABTB1|p.P318Qfs*36|2|0.4|ENSG00000114626|chr3:127677762-127677762|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.2950439453125	2	536.295299	1070.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.586	1	31.586	31.086	32.086	0								0	0	0	0.4201	1	10894	10894		24.203	1.1603	1		+		48358	12047	32048	32182	48957	48957					0.043580294773164496
VVFYIFTL	8	Unmodified	_VVFYIFTL_					0	0	0			REV__nc|ENSG00000180616|P30874-2|SSTR2	REV__nc|ENSG00000180616|P30874-2|SSTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29229736328125	2	501.288954	1000.56336	2.9237	0.0014656	2.812	0.0014096	5.7357	0.0028752	501.29002408067885	37.928	0.66694	37.928	37.535	38.202	0					25	14	3	0	0	0	0.60719	1	14876	14876		37.028	8.947	1	449890	+		48359	16816	32049	32183	48958	48958					0.06309618085094826
VVGAVGVGK	9	Unmodified	_VVGAVGVGK_					0	0	0		NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant;KRAS|p.G12V|32|0.43|ENSG00000133703|chr12:25245350-25245350|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	393.2475891113281	2	393.247621	784.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.914	1	21.914	21.414	22.414	0								0	0	0	0.31623	1	7036	7036		31.955	6.5047	1				48360	11264	32050	32184	48959	48959					0.07982721076950838
VVGAVGVGK	9	Unmodified	_VVGAVGVGK_					0	0	0		NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant;KRAS|p.G12V|32|0.43|ENSG00000133703|chr12:25245350-25245350|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.2474365234375	2	393.247621	784.480688	0.12283	4.8301E-05	-0.90047	-0.00035411	-0.77764	-0.00030581	393.2472754794525	21.784	0.16684	21.784	21.675	21.842	0					5	3	2	0	0	0	0.14734	1	7288	7288		68.485	18.46	1	213140			48361	11264	32050	32184	48960	48960					0.07982721076950838
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.78857421875	2	473.789653	945.564752	-0.017674	-8.3736E-06	-0.60468	-0.00028649	-0.62235	-0.00029486	473.7892969705388	31.632	0.31703	31.632	31.536	31.853	0					39	14	4	0	0	0	0.077948	1	10162	10162		85.359	35.918	1	1070100			48362	6154	32051	32185	48961	48961					0.08979252173855912
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.78924560546875	2	473.789653	945.564752	-0.12144	-5.7539E-05	-1.6533	-0.00078331	-1.7747	-0.00084085	473.78862623013316	31.869	0.34716	31.869	31.668	32.015	0					14	7	3	0	0	0	0.0090636	1	12070	12070		143.02	82.725	1	538900			48363	6154	32051	32185	48962	48962					0.08979252173855912
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.78912353515625	2	473.789653	945.564752	-0.12458	-5.9027E-05	-0.45119	-0.00021377	-0.57578	-0.0002728	473.7894611478928	31.685	0.31092	31.685	31.566	31.876	0					21	9	3	0	0	0	0.087582	1	10915	10915		82.305	41.732	1	867090			48364	6154	32051	32185	48963	48963					0.08979252173855912
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.7893371582031	2	473.789653	945.564752	-0.48108	-0.00022793	-0.21956	-0.00010403	-0.70064	-0.00033195	473.78955006147345	31.698	0.45102	31.698	31.516	31.967	0					27	13	4	0	0	0	0.0090636	1	10926	10926		143.02	82.047	1	1600100			48365	6154	32051	32185	48964	48964					0.08979252173855912
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.2908020019531	2	473.789653	945.564752	-2.552	-0.0012091	1.7244	0.000817	-0.8276	-0.00039211	473.7904656759081	31.7	0.23488	31.7	31.582	31.817	0					14	6	3	0	0	0	0.1236	1	10924	10924		73.975	38.356	1	243470			48366	6154	32051	32185	48965	48965					0.08979252173855912
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENST00000515209.5_1_5:176759089-176761331:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	473.78936767578125	2	473.789653	945.564752	-0.58937	-0.00027924	-0.33257	-0.00015757	-0.92194	-0.00043681	473.7894351763066	31.877	0.4684	31.877	31.718	32.186	0					27	9	5	0	0	0	0.0090636	1	11948	11948		143.02	82.725	1	6291700			48367	6154	32051	32185	48966	48966					0.08979252173855912
VVGCPLER	8	Unmodified	_VVGCPLER_					0	0	0		nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7364196777344	2	436.736563	871.458573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.254	1	20.254	19.754	20.754	0								0	0	0	1.7419	1	5660	5660		30.504	3.7075	1				48368	3979	32052	32186	48967	48967					0.017701733368767236
VVGDGAVGK	9	Unmodified	_VVGDGAVGK_					0	0	0		ENSG00000128340|ENST00000249071|RAC2;RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant;RHOQ|p.F175Lfs*6|1|0.05|ENSG00000119729|chr2:46580986-46580986|T/-|frameshift_variant;ENST00000469532.1_1_22:37628528-37640188:-|nuORF;nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42;nc|ENSG00000126785|Q9H4E5-2|RHOJ;RHOQ|p.R193Efs*2|1|0.25|ENSG00000119729|chr2:46581035-46581035|A/-|frameshift_variant;ENSG00000119729|ENST00000238738|RHOQ;ENSG00000126785|ENST00000316754|RHOJ;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENSG00000177105|ENST00000351018|RHOG	ENSG00000128340|ENST00000249071|RAC2;ENSG00000169750|ENST00000306897|RAC3;ENSG00000177105|ENST00000351018|RHOG	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	401.22686767578125	2	401.226885	800.439217	0.67137	0.00026937	-0.38828	-0.00015579	0.28309	0.00011358	401.22675782480695	18.539	0.18341	18.539	18.445	18.629	0					7	4	2	0	0	0	0.14603	1	5432	5432		68.787	15.435	1	223490			48369	4065;6646;3539	32053	32187	48968	48968					0.031015403176297696
VVGDGAVGK	9	Unmodified	_VVGDGAVGK_					0	0	0		ENSG00000128340|ENST00000249071|RAC2;RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant;RHOQ|p.F175Lfs*6|1|0.05|ENSG00000119729|chr2:46580986-46580986|T/-|frameshift_variant;ENST00000469532.1_1_22:37628528-37640188:-|nuORF;nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42;nc|ENSG00000126785|Q9H4E5-2|RHOJ;RHOQ|p.R193Efs*2|1|0.25|ENSG00000119729|chr2:46581035-46581035|A/-|frameshift_variant;ENSG00000119729|ENST00000238738|RHOQ;ENSG00000126785|ENST00000316754|RHOJ;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENSG00000177105|ENST00000351018|RHOG	ENSG00000128340|ENST00000249071|RAC2;ENSG00000169750|ENST00000306897|RAC3;ENSG00000177105|ENST00000351018|RHOG	ENSG00000169750|ENST00000306897|RAC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.22686767578125	2	401.226885	800.439217	0.059979	2.4065E-05	-0.021677	-8.6974E-06	0.038302	1.5368E-05	401.2269191851319	18.468	0.21685	18.468	18.361	18.578	0					6	4	2	0	0	0	0.16002	1	5684	5684		66.429	7.6473	1	519590			48370	4065;6646;3539	32053	32187	48969	48969					0.031015403176297696
VVGEISNI	8	Unmodified	_VVGEISNI_					0	0	0		tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	415.7337646484375	2	415.734543	829.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.914	1	30.914	30.414	31.414	0								0	0	0	1.7419	1	10198	10198		40.573	1.7665	1				48371	22928	32054	32188	48970	48970					0.03298407114800739
VVGGGALA	8	Unmodified	_VVGGGALA_					0	0	0		ENST00000421890.5_1_7:5862807-5863047:+|nuORF	ENST00000421890.5_1_7:5862807-5863047:+|nuORF	ENST00000421890.5_1_7:5862807-5863047:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	322.1940612792969	2	322.192314	642.370075	3.6774	0.0011848	1.1741	0.00037827	4.8514	0.0015631	322.19265149391475	26.388	0.15695	26.388	26.323	26.48	0					7	5	2	0	0	0	0.77625	1	8304	8304		5.0869	0	1	41946			48372	9404	32055	32189	48971	48971					0.034585010887212775
VVGGKPGLG	9	Unmodified	_VVGGKPGLG_					0	0	0			REV__ENST00000409858.7_1_9:139977361-139977631:+|nuORF	REV__ENST00000409858.7_1_9:139977361-139977631:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	392.23980712890625	2	392.239796	782.465038	-1.2423	-0.00048728	1.2883	0.00050533	0.046002	1.8044E-05	392.24034183779077	19.823	0.21998	19.823	19.731	19.951	0					13	7	2	0	0	0	0.50461	1	5424	5424		31.955	0	1	172390	+		48373	19003	32056	32190	48972	48972					0.06510434559913847
VVGGLAVGK	9	Unmodified	_VVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	400.2557067871094	2	400.255446	798.496338	1.8581	0.00074373	-1.2527	-0.0005014	0.60545	0.00024233	400.25494169386656	25.635	0.10034	25.635	25.568	25.669	0					5	3	2	0	0	0	0.1236	1	7724	7724		73.975	21.676	1	71915			48374	2227	32057	32191	48973	48973					0.08903007594005885
VVGGLAVGK	9	Unmodified	_VVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.2554626464844	2	400.255446	798.496338	0.67565	0.00027043	-0.80294	-0.00032138	-0.1273	-5.0952E-05	400.25504574574506	25.937	0.39775	25.937	25.756	26.154	0					12	7	3	0	0	0	0.068692	1	8873	8873		88.643	14.126	1	483600			48375	2227	32057	32191	48974	48974					0.08903007594005885
VVGGLAVGK	9	Unmodified	_VVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.2552795410156	2	400.255446	798.496338	0.067061	2.6841E-05	-0.15523	-6.213E-05	-0.088165	-3.5289E-05	400.25532907378437	25.943	0.29601	25.943	25.755	26.051	0					10	4	3	0	0	0	0.50461	1	9264	9264		31.955	3.7006	1	986380			48376	2227	32057	32191	48975	48975					0.08903007594005885
VVGGLAVGK	9	Unmodified	_VVGGLAVGK_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	400.2552490234375	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.738	1	25.738	25.238	26.238	0								0	0	0	0.15865	1	8227	8227		57.811	13.28	1				48377	2227	32057	32191	48976	48976					0.08903007594005885
VVGGLDIHK	9	Unmodified	_VVGGLDIHK_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2766418457031	2	469.276909	936.539266	-1.1759	-0.00055182	0.14597	6.8502E-05	-1.0299	-0.00048332	469.2769145181489	24.68	0.12134	24.68	24.618	24.739	0					8	4	2	0	0	0	0.07136	1	7591	7591		87.696	45.3	1	90358			48378	7844	32058	32192	48977	48977					0.06845777651426488
VVGGLDIHK	9	Unmodified	_VVGGLDIHK_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2765808105469	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.744	1	24.744	24.244	25.244	0								0	0	0	0.17378	1	7763	7763		54.776	11.15	1				48379	7844	32058	32192	48978	48978					0.06845777651426488
VVGGVLPNG	9	Unmodified	_VVGGVLPNG_					0	0	0		nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.23736572265625	2	406.237253	810.459953	0.97442	0.00039585	-1.2144	-0.00049334	-0.23999	-9.7491E-05	406.2366755451093	19.575	0.62628	19.575	19.169	19.795	0					25	14	2	0	0	0	0.39123	1	5862	5862		42.474	5.446	1	311680			48380	11783	32059	32193	48979	48979					0.047141306972775965
VVGGVLPNG	9	Unmodified	_VVGGVLPNG_					0	0	0		nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	406.2373046875	2	406.237253	810.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.276	1	19.276	18.776	19.776	0								0	0	0	0.20652	1	5202	5202		50.025	5.4935	1				48381	11783	32059	32193	48980	48980					0.047141306972775965
VVGIVAAAAL	10	Unmodified	_VVGIVAAAAL_					0	0	0		ENSG00000110076|ENST00000265459|NRXN2;nc|ENSG00000110076|Q9P2S2-2|NRXN2;nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000021645|Q9Y4C0|NRXN3;ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000179915|Q9ULB1-3|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;nc|ENSG00000179915|Q9ULB1-4|NRXN1;nc|ENSG00000021645|Q9HDB5-2|NRXN3;nc|ENSG00000110076|P58401|NRXN2;nc|ENSG00000021645|Q9HDB5|NRXN3;ENST00000464307.5_1_11:64374670-64390737:-|nuORF;nc|ENSG00000179915|P58400|NRXN1;nc|ENSG00000021645|Q9HDB5-4|NRXN3;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000021645|Q9Y4C0-3|NRXN3	ENSG00000110076|ENST00000265459|NRXN2	ENSG00000110076|ENST00000265459|NRXN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.2883605957031	2	442.284203	882.553853	0.27844	0.00012315	-0.36499	-0.00016143	-0.086545	-3.8278E-05	442.2840747510976	33.341	0.57743	33.341	33.09	33.667	0					50	22	3	0	0	0	0.3122	1	10938	10938		65.897	11.133	1	1683300			48382	2608	32060	32194	48981	48981					0.10787849799555715
VVGKGGLG	8	Unmodified	_VVGKGGLG_					0	0	0			REV__nc|ENSG00000196730|P53355-2|DAPK1	REV__nc|ENSG00000196730|P53355-2|DAPK1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	343.7146301269531	2	343.713414	685.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.665	1	20.665	20.165	21.165	0								0	0	0	1.7419	1	6448	6448		29.842	0	1		+		48383	21174	32061	32195	48982	48982					0.056984764970820834
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.8407592773438	2	548.839874	1095.66519	1.6082	0.00088263	-0.30641	-0.00016817	1.3018	0.00071446	548.8397922610868	20.313	0.19152	20.313	20.197	20.389	0					14	6	3	0	0	0	0.071575	1	5397	5397		90.601	42.685	1	391240			48384	5893	32062	32196	48983	48983					0.12118864436843069
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.22882080078125	3	366.229008	1095.66519	0.086675	3.1743E-05	-0.091592	-3.3543E-05	-0.0049165	-1.8006E-06	366.22885636263527	20.275	0.20056	20.275	20.208	20.409	0					13	6	3	0	0	0	0.61238	1	5402	5402		32.751	2.1817	1	498120			48385	5893	32062	32196	48984	48984					0.12118864436843069
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.2289733886719	3	366.229008	1095.66519	0.47384	0.00017353	-0.6339	-0.00023215	-0.16007	-5.8621E-05	366.2287175960351	20.65	0.33824	20.65	20.51	20.848	0					20	7	4	0	0	0	0.3029	1	6429	6429		66.92	23.269	1	3925400			48386	5893	32062	32196	48985	48985					0.12118864436843069
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.8405151367188	2	548.839874	1095.66519	0.3778	0.00020735	0.75085	0.0004121	1.1287	0.00061945	548.8401779701292	20.329	0.1868	20.329	20.26	20.447	0					14	5	4	0	0	0	0.099683	1	5652	5652		74.165	0	1	471770			48387	5893	32062	32196	48986	48986					0.12118864436843069
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	366.22900390625	3	366.229008	1095.66519	-0.98266	-0.00035988	0.79218	0.00029012	-0.19048	-6.9758E-05	366.2293438448682	20.329	0.149	20.329	20.26	20.409	0					10	4	3	0	0	0	0.56063	1	5661	5661		38.754	4.832	1	275550			48388	5893	32062	32196	48987	48987					0.12118864436843069
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.8405151367188	2	548.839874	1095.66519	1.7565	0.00096406	-0.67508	-0.00037051	1.0815	0.00059355	548.8394091429884	20.521	0.51777	20.521	20.412	20.93	0					24	10	4	0	0	0	0.01098	1	6674	6674		128.6	66.911	1	3288000			48389	5893	32062	32196	48988	48988					0.12118864436843069
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.8411865234375	2	548.839874	1095.66519	1.1597	0.00063648	0.38991	0.000214	1.5496	0.00085048	548.8400411020771	20.395	0.2264	20.395	20.265	20.492	0					14	5	4	0	0	0	0.078327	1	5700	5700		98.582	50.925	1	374520			48390	5893	32062	32196	48989	48989					0.12118864436843069
VVGKPIEVQK	10	Unmodified	_VVGKPIEVQK_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8402099609375	2	548.839874	1095.66519	1.8484	0.0010145	-0.95486	-0.00052407	0.8935	0.00049039	548.8393363322004	20.537	0.31504	20.537	20.377	20.692	0					17	6	4	0	0	0	0.009541	1	6524	6524		133.99	72.302	1	4334300			48391	5893	32062	32196	48990	48990					0.12118864436843069
VVGLERPL	8	Unmodified	_VVGLERPL_					0	0	0		ENST00000377516.6_1_1:7903664-7903865:-|nuORF	ENST00000377516.6_1_1:7903664-7903865:-|nuORF	ENST00000377516.6_1_1:7903664-7903865:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.773681640625	2	441.774003	881.533452	0.29552	0.00013055	-0.648	-0.00028627	-0.35249	-0.00015572	441.77370513165914	32.076	0.55149	32.076	31.688	32.239	0					33	23	2	0	0	0	0.7126	1	10400	10400		31.955	3.7006	1	89929			48392	9053	32063	32197	48991	48991					0.08794679139748496
VVGLGSVAL	9	Unmodified	_VVGLGSVAL_					0	0	0			REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	407.7554626464844	2	407.755278	813.496004	-0.56867	-0.00023188	1.1262	0.00045921	0.55751	0.00022733	407.7557806349486	37.666	0.14836	37.666	37.588	37.736	0					6	4	2	0	0	0	0.23186	1	14301	14301		57.811	8.3697	1	94768	+		48393	14632	32064	32198	48992	48992					0.08179587874133176
VVGLIQDLY	9	Unmodified	_VVGLIQDLY_					0	0	0		ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	510.79412841796875	2	510.292225	1018.5699	1.0587	0.00054025	0.34053	0.00017377	1.3992	0.00071401	510.2923518955105	37.534	0.25666	37.534	37.416	37.673	0					31	14	3	0	0	0	0.26904	1	12273	12273		53.351	3.8154	1	255750			48394	9105	32065	32199	48993	48993					0.06135511245804537
VVGLIQDLY	9	Unmodified	_VVGLIQDLY_					0	0	0		ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.292724609375	2	510.292225	1018.5699	-0.010176	-5.1925E-06	0.92354	0.00047128	0.91337	0.00046608	510.292786568768	37.761	0.35056	37.761	37.61	37.961	0					15	7	3	0	0	0	0.18605	1	14778	14778		63.306	6.8725	1	271180			48395	9105	32065	32199	48994	48994					0.06135511245804537
VVGLPNVGK	9	Unmodified	_VVGLPNVGK_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	441.7745361328125	2	441.774003	881.533452	0.29552	0.00013055	-0.648	-0.00028627	-0.35249	-0.00015572	441.77370513165914	32.076	0.55149	32.076	31.688	32.239	0					33	23	2	0	0	0	0.30268	1	10253	10253		50.025	4.0726	1	89929			48396	3620	32066	32200	48995	48995					0.08794679139759864
VVGLPNVGK	9	Unmodified	_VVGLPNVGK_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.77386474609375	2	441.774003	881.533452	0.57086	0.00025219	-1.0058	-0.00044433	-0.43493	-0.00019214	441.77354177491173	32.374	0.69504	32.374	31.86	32.555	0					39	17	3	0	0	0	0.32741	1	11785	11785		47.916	10.756	1	487580			48397	3620	32066	32200	48996	48996					0.08794679139759864
VVGLPNVGK	9	Unmodified	_VVGLPNVGK_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	441.7738037109375	2	441.774003	881.533452	-0.29211	-0.00012905	0.20955	9.2575E-05	-0.082553	-3.647E-05	441.77408500952606	32.197	0.73244	32.197	31.81	32.542	0					33	16	3	0	0	0	0.32741	2	12289	12118;12289		47.916	7.343	1	314730			48398	3620	32066	32200	48997;48998	48998					0.08794679139759864
VVGLPNVGK	9	Unmodified	_VVGLPNVGK_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	441.7740173339844	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.036	1	32.036	31.536	32.536	0								0	0	0	0.22106	1	11098	11098		47.916	19.661	1				48399	3620	32066	32200	48999	48999					0.08794679139759864
VVGLPNVGK	9	Unmodified	_VVGLPNVGK_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.77398681640625	2	441.774003	881.533452	-0.52293	-0.00023102	0.39552	0.00017473	-0.12741	-5.6288E-05	441.77413445495813	32.258	0.82186	32.258	31.768	32.59	0					38	16	3	0	0	0	0.16524	2	12189	12022;12189		65.803	7.2737	1	465930			48400	3620	32066	32200	49000;49001	49001					0.08794679139759864
VVGPELHHK	9	Unmodified	_VVGPELHHK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.2884826660156	2	508.287808	1014.56106	-0.025366	-1.2893E-05	0.62664	0.00031851	0.60127	0.00030562	508.28821541747004	17.605	0.20809	17.605	17.488	17.696	0					14	5	3	0	0	0	0.2873	1	4994	4994		51.335	3.6781	1	354120			48401	6707	32067	32201	49002	49002					0.05436582399988765
VVGPELHHK	9	Unmodified	_VVGPELHHK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2881164550781	2	508.287808	1014.56106	-0.57212	-0.0002908	1.4823	0.00075343	0.91017	0.00046263	508.2885790096244	17.377	0.22825	17.377	17.247	17.475	0					19	8	3	0	0	0	0.24095	1	4319	4319		56.721	12.604	1	100510			48402	6707	32067	32201	49003	49003					0.05436582399988765
VVGPELHHK	9	Unmodified	_VVGPELHHK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2882385253906	2	508.287808	1014.56106	1.1405	0.00057969	-1.2786	-0.0006499	-0.13811	-7.0202E-05	508.2871312412614	17.586	0.45155	17.586	17.351	17.802	0					22	9	3	0	0	0	0.034359	1	5243	5243		104.75	49.242	1	1147400			48403	6707	32067	32201	49004	49004					0.05436582399988765
VVGPELHHK	9	Unmodified	_VVGPELHHK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.2879638671875	2	508.287808	1014.56106	-1.8901	-0.00096074	2.3955	0.0012176	0.50539	0.00025688	508.28914188053676	17.376	0.34999	17.376	17.183	17.533	0					17	10	3	0	0	0	0.25716	1	4295	4295		54.776	15.97	1	133090			48404	6707	32067	32201	49005	49005					0.05436582399988765
VVGPELHHK	9	Unmodified	_VVGPELHHK_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2882385253906	2	508.287808	1014.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.536	1	17.536	17.036	18.036	0								0	0	0	0.080575	1	5077	5077		77.318	24.229	1				48405	6707	32067	32201	49006	49006					0.05436582399988765
VVGPKLGK	8	Unmodified	_VVGPKLGK_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.26580810546875	2	399.265813	796.517074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.108	1	12.108	11.608	12.608	0								0	0	0	1.7419	1	2500	2500		44.531	16.277	1		+		48406	14109	32068	32202	49007	49007					0.11067597973669763
VVGPPAVVPA	10	Unmodified	_VVGPPAVVPA_					0	0	0			REV__ENST00000491144.5_1_3:183853173-183855624:+|nuORF	REV__ENST00000491144.5_1_3:183853173-183855624:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.2758483886719	2	453.276378	904.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.844	1	31.844	31.344	32.344	0								0	0	0	0.34018	1	12048	12048		44.531	9.3304	1		+		48407	12782	32069	32203	49008	49008					0.08211563282520729
VVGPVGAGK	9	Unmodified	_VVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	392.23980712890625	2	392.239796	782.465038	0.56935	0.00022332	-0.73828	-0.00028958	-0.16893	-6.6259E-05	392.2394971030257	19.832	0.20839	19.832	19.704	19.912	0					15	6	3	0	0	0	0.41354	1	5186	5186		40.573	13.777	1	508470			48408	3407;17	32070	32204	49009	49009					0.06510434559902478
VVGPVGAGK	9	Unmodified	_VVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2395935058594	2	392.239796	782.465038	0.1299	5.095E-05	-0.43343	-0.00017001	-0.30353	-0.00011906	392.2396082653063	20.037	0.31874	20.037	19.877	20.195	0					17	6	4	0	0	0	0.35045	1	6417	6417		45.952	3.4775	1	2654400			48409	3407;17	32070	32204	49010	49010					0.06510434559902478
VVGPVGAGK	9	Unmodified	_VVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	392.2397766113281	2	392.239796	782.465038	0.39242	0.00015392	-0.39823	-0.0001562	-0.0058026	-2.276E-06	392.2395994185886	20.023	0.36979	20.023	19.859	20.229	0					15	7	3	0	0	0	0.32741	1	6435	6435		47.916	14.4	1	1295400			48410	3407;17	32070	32204	49011	49011					0.06510434559902478
VVGPVGAGK	9	Unmodified	_VVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.23980712890625	2	392.239796	782.465038	0.21988	8.6246E-05	0.30646	0.0001202	0.52634	0.00020645	392.23991571782005	19.867	0.24197	19.867	19.755	19.997	0					12	5	3	0	0	0	0.30268	1	5460	5460		50.025	12.996	1	204700			48411	3407;17	32070	32204	49012	49012					0.06510434559902478
VVGPVGAGK	9	Unmodified	_VVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	392.24005126953125	2	392.239796	782.465038	-0.15819	-6.2049E-05	0.45572	0.00017875	0.29753	0.0001167	392.24001380473925	19.88	0.27961	19.88	19.743	20.023	0					12	6	3	0	0	0	0.35045	1	5476	5476		45.952	16.11	1	357780			48412	3407;17	32070	32204	49013	49013					0.06510434559902478
VVGPVGAGK	9	Unmodified	_VVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.2397155761719	2	392.239796	782.465038	-0.67282	-0.00026391	0.69577	0.00027291	0.022946	9.0004E-06	392.2400079517896	20.036	0.31627	20.036	19.893	20.209	0					19	6	4	0	0	0	0.25109	1	6271	6271		55.504	10.973	1	2100700			48413	3407;17	32070	32204	49014	49014					0.06510434559902478
VVGPVGAGK	9	Unmodified	_VVGPVGAGK_					0	0	0		ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant	ABCC6|p.L780Wfs*31|1|0.44|ENSG00000091262|chr16:16178875-16178875|G/-|frameshift_variant;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.2397766113281	2	392.239796	782.465038	0.45881	0.00017996	-0.59728	-0.00023428	-0.13847	-5.4313E-05	392.23954449311884	20.036	0.3169	20.036	19.876	20.193	0					19	6	4	0	0	0	0.25109	1	6285	6285		55.504	21.989	1	3045200			48414	3407;17	32070	32204	49015	49015					0.06510434559902478
VVGPVGCGK	9	Unmodified	_VVGPVGCGK_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;ABCC3|p.A658D|1|0.1|ENSG00000108846|chr17:50669175-50669175|C/A|missense_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	408.2257080078125	2	408.225831	814.437109	0.62837	0.00025652	-0.53088	-0.00021672	0.097491	3.9798E-05	408.2255588086527	21.844	0.35955	21.844	21.713	22.073	0					20	10	2	0	0	0	0.30268	1	6089	6089		50.025	16.509	1	594460			48415	2554	32071	32205	49016	49016					0.0224678830816174
VVGPVGCGK	9	Unmodified	_VVGPVGCGK_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;ABCC3|p.A658D|1|0.1|ENSG00000108846|chr17:50669175-50669175|C/A|missense_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	408.2256774902344	2	408.225831	814.437109	-1.4027	-0.00057262	0.92414	0.00037726	-0.47857	-0.00019536	408.2262897689424	21.855	0.43515	21.855	21.706	22.141	0					25	13	3	0	0	0	0.32741	1	6349	6349		47.916	15.961	1	505510			48416	2554	32071	32205	49017	49017					0.0224678830816174
VVGPVGCGK	9	Unmodified	_VVGPVGCGK_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;ABCC3|p.A658D|1|0.1|ENSG00000108846|chr17:50669175-50669175|C/A|missense_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	408.2255554199219	2	408.225831	814.437109	-0.096004	-3.9191E-05	-0.49145	-0.00020062	-0.58746	-0.00023982	408.2256292997341	21.916	0.49828	21.916	21.761	22.259	0					23	11	3	0	0	0	0.23186	1	6423	6423		57.811	17.239	1	438790			48417	2554	32071	32205	49018	49018					0.0224678830816174
VVGPVGCGK	9	Carbamidomethyl (C)	_VVGPVGC(Carbamidomethyl (C))GK_	VVGPVGC(1)GK		VVGPVGC(48)GK		0	1	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;ABCC3|p.A658D|1|0.1|ENSG00000108846|chr17:50669175-50669175|C/A|missense_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.7362976074219	2	436.736563	871.458573	-0.27721	-0.00012107	-0.45994	-0.00020087	-0.73715	-0.00032194	436.7362604755483	20.166	0.2198	20.166	20.058	20.277	0					12	7	2	0	0	0	0.32741	1	5344	5344		47.916	9.1095	1	140130			48418	2554	32071	32206	49019	49019	101				0.017701733368880923
VVGPVGCGK	9	Carbamidomethyl (C)	_VVGPVGC(Carbamidomethyl (C))GK_	VVGPVGC(1)GK		VVGPVGC(74)GK		0	1	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;ABCC3|p.A658D|1|0.1|ENSG00000108846|chr17:50669175-50669175|C/A|missense_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	436.7365417480469	2	436.736563	871.458573	-0.40575	-0.00017721	-0.45538	-0.00019888	-0.86113	-0.00037609	436.7366067848436	20.512	0.23749	20.512	20.373	20.61	0					16	5	4	0	0	0	0.1236	1	6386	6386		73.975	29.444	1	951060			48419	2554	32071	32206	49020	49020	101				0.017701733368880923
VVGPVGCGK	9	Carbamidomethyl (C)	_VVGPVGC(Carbamidomethyl (C))GK_	VVGPVGC(1)GK		VVGPVGC(74)GK		0	1	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;ABCC3|p.A658D|1|0.1|ENSG00000108846|chr17:50669175-50669175|C/A|missense_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7362976074219	2	436.736563	871.458573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.399	1	20.399	19.899	20.899	0								0	0	0	0.09203	1	6604	6604		73.975	26.059	1				48420	2554	32071	32206	49021	49021	101				0.017701733368880923
VVGPVGCGK	9	Carbamidomethyl (C)	_VVGPVGC(Carbamidomethyl (C))GK_	VVGPVGC(1)GK		VVGPVGC(77)GK		0	1	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;ABCC3|p.A658D|1|0.1|ENSG00000108846|chr17:50669175-50669175|C/A|missense_variant	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.73638916015625	2	436.736563	871.458573	-3.0618	-0.0013372	2.031	0.00088703	-1.0307	-0.00045016	436.7377588735136	20.156	0.40439	20.156	19.906	20.31	0					19	9	3	0	0	0	0.11118	1	5653	5653		76.847	32.316	1	231820			48421	2554	32071	32206	49022	49022	101				0.017701733368880923
VVGPVSLPR	9	Unmodified	_VVGPVSLPR_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.2870178222656	2	462.287277	922.560001	0.71969	0.00033271	-1.109	-0.00051266	-0.38927	-0.00017995	462.2866492806764	33.301	0.3098	33.301	33.138	33.448	0					13	7	2	0	0	0	0.25716	1	12752	12752		54.776	1.4249	1	249740			48422	6257	32072	32207	49023	49023					0.09562368031095048
VVGPWIQTK	9	Unmodified	_VVGPWIQTK_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.3001708984375	2	514.300384	1026.58622	1.3545	0.00069663	-1.2046	-0.00061951	0.14994	7.7114E-05	514.2998031012224	35.325	0.40047	35.325	35.102	35.503	0					26	11	3	0	0	0	0.3269	1	13690	13690		47.96	3.5823	1	507540			48423	3641	32073	32208	49024	49024					0.07398637202550162
VVGSLNVN	8	Unmodified	_VVGSLNVN_					0	0	0		ENSG00000106780|ENST00000373930|MEGF9	ENSG00000106780|ENST00000373930|MEGF9	ENSG00000106780|ENST00000373930|MEGF9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	401.2274169921875	2	401.226885	800.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.259	1	18.259	17.759	18.759	0								0	0	0	1.7419	1	4740	4740		42.474	1.9018	1				48424	2460	32074	32209	49025	49025					0.03101540317618401
VVGTNIVKK	9	Unmodified	_VVGTNIVKK_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.30816650390625	2	479.30821	956.601866	-0.0054653	-2.6196E-06	-0.039657	-1.9008E-05	-0.045122	-2.1628E-05	479.308142821724	20.031	0.10748	20.031	19.961	20.069	0					5	3	2	0	0	0	0.15163	1	5296	5296		67.494	18.052	1	163590			48425	4489	32075	32210	49026	49026					0.12182923719603878
VVGTNIVKK	9	Unmodified	_VVGTNIVKK_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	479.3081970214844	2	479.30821	956.601866	-0.23535	-0.00011281	0.040548	1.9435E-05	-0.1948	-9.3371E-05	479.30824142752647	20.381	0.15815	20.381	20.275	20.433	0					6	3	2	0	0	0	0.078509	1	6322	6322		85.161	23.053	1	775590			48426	4489	32075	32210	49027	49027					0.12182923719603878
VVGVTQALP	9	Unmodified	_VVGVTQALP_					0	0	0			REV__nc|ENSG00000011426|Q9NQW6-2|ANLN	REV__nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.265625	2	442.26601	882.517468	-0.28901	-0.00012782	-0.38026	-0.00016818	-0.66927	-0.00029599	442.26584784752174	26.288	0.48431	26.288	25.937	26.421	0					35	16	3	0	0	0	0.35045	1	7876	7876		45.952	0	1	371090	+		48427	12907	32076	32211	49028	49028					0.07150972902832109
VVHDCMYVM	9	2 Oxidation (M)	_VVHDCM(Oxidation (M))YVM(Oxidation (M))_		VVHDCM(1)YVM(1)		VVHDCM(41)YVM(41)	0	0	2		KBTBD2|p.I431M|1|0.15|ENSG00000170852|chr7:32869924-32869924|A/C|missense_variant	KBTBD2|p.I431M|1|0.15|ENSG00000170852|chr7:32869924-32869924|A/C|missense_variant	KBTBD2|p.I431M|1|0.15|ENSG00000170852|chr7:32869924-32869924|A/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	564.7278442382812	2	564.729763	1127.44497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.246	1	16.246	15.746	16.746	0								0	0	0	0.27166	1	3859	3859		40.573	10.255	1				48428	11240	32077	32212	49029	49029		438;439			-0.1136518854887072
VVHDCMYVM	9	2 Oxidation (M)	_VVHDCM(Oxidation (M))YVM(Oxidation (M))_		VVHDCM(1)YVM(1)		VVHDCM(42)YVM(42)	0	0	2		KBTBD2|p.I431M|1|0.15|ENSG00000170852|chr7:32869924-32869924|A/C|missense_variant	KBTBD2|p.I431M|1|0.15|ENSG00000170852|chr7:32869924-32869924|A/C|missense_variant	KBTBD2|p.I431M|1|0.15|ENSG00000170852|chr7:32869924-32869924|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	376.82061767578125	3	376.822267	1127.44497	-2.1276	-0.00080174	-2.4197	-0.00091178	-4.5473	-0.0017135	376.82158376107003	16.291	0.18499	16.291	16.218	16.403	0					10	5	3	0	0	0	0.39215	1	3823	3823		42.396	13.819	1	265680			48429	11240	32077	32212	49030	49030		438;439			-0.1136518854887072
VVHGGMSIFLK	11	Unmodified	_VVHGGMSIFLK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.5584716796875	3	396.55836	1186.65325	0.61939	0.00024562	-1.0077	-0.00039963	-0.38836	-0.00015401	396.55811608926797	36.321	0.26637	36.321	36.242	36.509	0					21	7	4	0	0	0	0.29287	1	14163	14163		63.426	29.505	1	392990			48430	8339	32078	32213	49031	49031					0.06738924421983938
VVHGGMSIFLK	11	Unmodified	_VVHGGMSIFLK_					0	0	0		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	594.3341064453125	2	594.333901	1186.65325	0.07463	4.4355E-05	0.079413	4.7198E-05	0.15404	9.1553E-05	594.3340926119494	36.241	0.41268	36.241	36.132	36.545	0					15	8	3	0	0	0	0.12207	1	14076	14076		76.17	30.197	1	328320			48431	8339	32078	32213	49032	49032					0.06738924421983938
VVHGGMSIFLK	11	Oxidation (M)	_VVHGGM(Oxidation (M))SIFLK_		VVHGGM(1)SIFLK		VVHGGM(78)SIFLK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	401.88995361328125	3	401.889998	1202.64816	0.41579	0.0001671	-0.57258	-0.00023011	-0.15679	-6.3014E-05	401.88984803920556	28.626	0.46102	28.626	28.499	28.96	0					17	9	4	0	0	0	0.17294	1	10536	10536		77.533	24.444	1	369690			48432	8339	32078	32214	49033	49033		336			0.054946205593751074
VVHGLFDSSY	10	Unmodified	_VVHGLFDSSY_					0	0	0		ENST00000493548.5_1_6:32122153-32123690:+|nuORF;nc|ENSG00000258388|Q9UMR5-2|PPT2;ENSG00000221988|ENST00000324816|PPT2;nc|ENSG00000258388|Q9UMR5-3|PPT2	ENST00000493548.5_1_6:32122153-32123690:+|nuORF	ENST00000493548.5_1_6:32122153-32123690:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	562.2750244140625	2	562.274564	1122.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.449	1	29.449	28.949	29.949	0								0	0	0	0.39525	1	9295	9295		31.955	2.7848	1				48433	7855	32079	32215	49034	49034					-0.021791512819845593
VVHHVTDPVS	10	Unmodified	_VVHHVTDPVS_					0	0	0			REV__nc|ENSG00000079785|Q92499-2|DDX1	REV__nc|ENSG00000079785|Q92499-2|DDX1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	363.8624267578125	3	363.861096	1088.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.802	1	13.802	13.302	14.302	0								0	0	0	0.3805	1	2750	2750		36.447	0	1		+		48434	20941	32080	32216	49035	49035					0.020719573291671622
VVHPHPNCGPP	11	Unmodified	_VVHPHPNCGPP_					0	0	0		ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	385.19232177734375	3	385.190559	1152.54985	0.57112	0.00021999	2.938	0.0011317	3.5091	0.0013517	385.1918142396298	20.234	0.41593	20.234	20.027	20.443	0					23	8	3	0	0	0	0.53842	1	6403	6403		41.427	4.9799	1	3252800			48435	4389	32081	32217	49036	49036					-0.020325629657918398
VVHSAIPESI	10	Unmodified	_VVHSAIPESI_					0	0	0			REV__ENST00000561277.5_1_15:77338902-77338950:-|nuORF	REV__ENST00000561277.5_1_15:77338902-77338950:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.290771484375	2	526.292756	1050.57096	0.46389	0.00024414	-1.3493	-0.0007101	-0.88537	-0.00046596	526.2918462779052	18.903	0.23781	18.903	18.827	19.065	0					10	7	2	0	0	0	0.54861	1	5046	5046		20.947	5.3051	1	459850	+		48436	20292	32082	32218	49037	49037					0.04769725614710296
VVHVSTSQK	9	Unmodified	_VVHVSTSQK_					0	0	0		ENST00000546652.6_2_12:53848615-53849765:+|nuORF	ENST00000546652.6_2_12:53848615-53849765:+|nuORF	ENST00000546652.6_2_12:53848615-53849765:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.77740478515625	2	492.777274	983.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.835	1	15.835	15.335	16.335	0								0	0	0	0.15451	1	3629	3629		58.782	21.623	1				48437	10580	32083	32219	49038	49038					0.04756572300482276
VVHVVGLH	8	Unmodified	_VVHVVGLH_					0	0	0			REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	287.1777038574219	3	287.176467	858.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.185	1	47.185	46.685	47.685	0								0	0	0	1.7419	1	18055	18055		7.6903	0	1		+		48438	20208	32084	32220	49039	49039					0.0726582968815137
VVIASEALW	9	Unmodified	_VVIASEALW_					0	0	0		nc|ENSG00000143147|Q8N6U8-3|GPR161;nc|ENSG00000143147|Q8N6U8-2|GPR161;nc|ENSG00000143147|Q8N6U8-5|GPR161;ENST00000493800.1_1_1:168059784-168074118:-|nuORF;nc|ENSG00000143147|Q8N6U8-4|GPR161;ENSG00000143147|ENST00000682931|GPR161;nc|ENSG00000143147|Q8N6U8-6|GPR161	nc|ENSG00000143147|Q8N6U8-3|GPR161	nc|ENSG00000143147|Q8N6U8-3|GPR161	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.77740478515625	2	494.279118	986.543683	-1.2711	-0.00062829	-4.1868	-0.0020694	-5.4579	-0.0026977	494.27749740176756	37.074	0.11496	37.074	37.004	37.119	0					10	6	2	0	0	0	0.50461	1	12558	12558		31.955	0.42505	1	42478			48439	4526	32085	32221	49040	49040					0.04987242074309961
VVICIELSTI	10	Unmodified	_VVICIELSTI_					0	0	0			REV__nc|ENSG00000089505|Q8IZ96-16|CMTM1	REV__nc|ENSG00000089505|Q8IZ96-16|CMTM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3114624023438	2	545.314843	1088.61513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.896	1	49.896	49.396	50.396	0								0	0	0	0.40446	1	19719	19719		29.15	2.4566	1		+		48440	12520	32086	32222	49041	49041					0.07436993716669349
VVICPEPPAK	10	Carbamidomethyl (C)	_VVIC(Carbamidomethyl (C))PEPPAK_	VVIC(1)PEPPAK		VVIC(44)PEPPAK		0	1	0		ENST00000600788.6_1_19:18118141-18118563:+|nuORF	ENST00000600788.6_1_19:18118141-18118563:+|nuORF	ENST00000600788.6_1_19:18118141-18118563:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.3068237304688	2	555.30481	1108.59507	0.58857	0.00032683	2.5242	0.0014017	3.1128	0.0017286	555.3063371661489	13.856	0.12614	13.856	13.771	13.897	0					5	3	2	0	0	0	0.51121	1	3254	3254		44.117	14.947	1	182780			48441	11032	32087	32223	49042	49042	445				0.04511242776720792
VVIGRSGEMIK	11	Unmodified	_VVIGRSGEMIK_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;KHSRP|p.Q699Sfs*24|1|0.35|ENSG00000088247|chr19:6415173-6415173|G/-|frameshift_variant;KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.8419189453125	2	594.842091	1187.66963	0.042435	2.5242E-05	-0.18997	-0.000113	-0.14753	-8.7757E-05	594.8419404727061	26.257	0.15792	26.257	26.151	26.309	0					5	3	2	0	0	0	0.22967	1	9384	9384		61.765	31.447	1	189660			48442	1774	32088	32224	49043	49043					0.08330005588095446
VVIGTPTLK	9	Unmodified	_VVIGTPTLK_					0	0	0		ENSG00000171763|ENST00000305560|SPATA5L1;SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.29681396484375	2	464.29731	926.580068	0.57361	0.00026633	-0.93744	-0.00043525	-0.36383	-0.00016893	464.2967137966161	32.792	0.29068	32.792	32.625	32.915	0					16	7	3	0	0	0	0.24095	1	12068	12068		56.721	10.749	1	205170			48443	6317	32089	32225	49044	49044					0.11384118971045609
VVIIHSVC	8	Unmodified	_VVIIHSVC_					0	0	0			REV__ENSG00000279514|ENST00000623907|OR4C16	REV__ENSG00000279514|ENST00000623907|OR4C16	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.251220703125	2	435.249306	868.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.325	1	47.325	46.825	47.825	0								0	0	0	1.7419	1	18089	18089		23.037	3.6767	1		+		48444	17846	32090	32226	49045	49045					0.04455647859299461
VVIIMLIWC	9	Unmodified	_VVIIMLIWC_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.3097534179688	2	545.313592	1088.61263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.493	1	49.493	48.993	49.993	0								0	0	0	0.3269	1	19572	19572		29.842	1.9593	1		+		48445	12866	32091	32227	49046	49046					0.07186866778033618
VVIKCVACK	9	Carbamidomethyl (C)	_VVIKCVAC(Carbamidomethyl (C))K_	VVIKC(0.159)VAC(0.841)K		VVIKC(-7.2)VAC(7.2)K		0	1	0			REV__ENSG00000157680|ENST00000614521|DGKI	REV__ENSG00000157680|ENST00000614521|DGKI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2921447753906	2	510.290648	1018.56674	3.0485	0.0015556	-0.18044	-9.2074E-05	2.868	0.0014635	510.2905120448	37.733	0.39535	37.733	37.627	38.022	0					18	8	3	0	0	0	0.2873	1	14785	14785		51.335	51.335	2	956950	+		48446	15665	32092	32228	49047	49047	569				0.05820221595786279
VVILESRG	8	Unmodified	_VVILESRG_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7634582519531	2	436.763635	871.512717	-0.90557	-0.00039552	0.35679	0.00015583	-0.54878	-0.00023969	436.76381283682184	24.185	0.13886	24.185	24.119	24.258	0					7	4	2	0	0	0	0.60719	1	7376	7376		47.916	3.5384	1	96916	+		48447	12861	32093	32229	49048	49048					0.071820887600893
VVIMVFELI	9	Unmodified	_VVIMVFELI_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.8178100585938	2	531.817021	1061.61949	1.1678	0.00062104	1.7767	0.00094489	2.9445	0.0015659	531.8177082891962	34.087	0.11324	34.087	34.027	34.141	0					5	3	2	0	0	0	0.39123	1	12048	12048		42.474	7.3224	1	39323	+		48448	17046	32094	32230	49049	49049					0.09114502930265189
VVINCAIVR	9	Unmodified	_VVINCAIVR_					0	0	0		ENST00000586619.1_1_19:46010999-46025451:+|nuORF;VASP|p.P119Lfs*34|1|0.18|ENSG00000125753|chr19:45521330-45521330|C/-|frameshift_variant;VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant;ENSG00000125753|ENST00000245932|VASP	ENST00000586619.1_1_19:46010999-46025451:+|nuORF	ENST00000586619.1_1_19:46010999-46025451:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.7943420410156	2	493.794412	985.574271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.827	1	36.827	36.327	37.327	0								0	0	0	0.13522	1	13919	13919		63.306	17.354	1				48449	3434	32095	32231	49050	49050					0.08090697187708429
VVINVNNILK	10	Unmodified	_VVINVNNILK_					0	0	0		NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.854736328125	2	563.353148	1124.69174	1.8727	0.001055	-1.0835	-0.00061038	0.78921	0.0004446	563.3525059641851	44.192	0.16893	44.192	44.129	44.297	0					13	9	2	0	0	0	0.24256	1	17226	17226		74.255	24.813	1	60978			48450	1430	32096	32232	49051	49051					0.13438553328182934
VVINVNNILK	10	Unmodified	_VVINVNNILK_					0	0	0		NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.3530883789062	2	563.353148	1124.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.186	1	44.186	43.686	44.686	0								0	0	0	0.3639	1	17224	17224		40.778	14.085	1				48451	1430	32096	32232	49052	49052					0.13438553328182934
VVINYSIVK	9	Unmodified	_VVINYSIVK_					0	0	0		nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;EVL|p.P188Hfs*41|1|0.18|ENSG00000196405|chr14:100128589-100128590|-/CC|frameshift_variant	nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.8167114257812	2	517.815867	1033.61718	1.3809	0.00071504	0.69778	0.00036132	2.0787	0.0010764	517.8161290528294	36.893	0.16943	36.893	36.815	36.984	0					12	8	2	0	0	0	0.40353	1	12076	12076		41.427	8.6142	1	85999			48452	7356	32097	32233	49053	49053					0.10171790516801593
VVINYSIVK	9	Unmodified	_VVINYSIVK_					0	0	0		nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;EVL|p.P188Hfs*41|1|0.18|ENSG00000196405|chr14:100128589-100128590|-/CC|frameshift_variant	nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.8163452148438	2	517.815867	1033.61718	1.3163	0.00068161	-0.46744	-0.00024205	0.84889	0.00043957	517.8156980897821	37.149	0.29842	37.149	37.004	37.302	0					19	8	4	0	0	0	0.0067848	1	14069	14069		150.36	80.734	1	542480			48453	7356	32097	32233	49054	49054					0.10171790516801593
VVINYSIVK	9	Unmodified	_VVINYSIVK_					0	0	0		nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;EVL|p.P188Hfs*41|1|0.18|ENSG00000196405|chr14:100128589-100128590|-/CC|frameshift_variant	nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.816162109375	2	517.815867	1033.61718	1.2365	0.00064029	0.78197	0.00040492	2.0185	0.0010452	517.8159257016923	36.89	0.15369	36.89	36.835	36.989	0					9	6	2	0	0	0	0.16806	1	13217	13217		65.465	17.55	1	47374			48454	7356	32097	32233	49055	49055					0.10171790516801593
VVINYSIVK	9	Unmodified	_VVINYSIVK_					0	0	0		nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;EVL|p.P188Hfs*41|1|0.18|ENSG00000196405|chr14:100128589-100128590|-/CC|frameshift_variant	nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.8160400390625	2	517.815867	1033.61718	0.23928	0.00012391	0.3552	0.00018393	0.59449	0.00030783	517.8160016383517	37.066	0.40536	37.066	36.88	37.285	0					20	8	4	0	0	0	0.0076184	1	14452	14452		146.79	59.089	1	1182000			48455	7356	32097	32233	49056	49056					0.10171790516801593
VVIRTANAQ	9	Unmodified	_VVIRTANAQ_					0	0	0		NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant;ENSG00000144815|ENST00000273347|NXPE3	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2851257324219	2	486.285266	970.555979	0.68994	0.00033551	-1.4301	-0.00069542	-0.74013	-0.00035991	486.284772126442	18.472	0.30979	18.472	18.385	18.695	0					14	7	3	0	0	0	0.41113	1	5423	5423		40.778	5.1599	1	308600			48456	4640	32098	32234	49057	49057					0.06952278537369239
VVISSSTSSSQ	11	Unmodified	_VVISSSTSSSQ_					0	0	0			REV__ENSG00000198569|ENST00000673835|SLC34A3	REV__ENSG00000198569|ENST00000673835|SLC34A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.273681640625	2	541.272218	1080.52988	4.8757	0.0026391	-1.307	-0.00070746	3.5686	0.0019316	541.2713910258354	17.706	0.11955	17.706	17.634	17.754	0					5	3	2	0	0	0	0.78104	1	4485	4485		19.104	0	1	80021	+		48457	17406	32099	32235	49058	49058					-0.007160802154203338
VVKAESQAA	9	Unmodified	_VVKAESQAA_					0	0	0			REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.7501525878906	2	451.750724	901.486896	0.23202	0.00010481	-0.51985	-0.00023484	-0.28783	-0.00013003	451.75048901100575	15.26	0.22548	15.26	15.133	15.358	0					8	5	2	0	0	0	0.47038	1	3875	3875		35.618	0	1	196230	+		48458	14648	32100	32236	49059	49059					0.03221194517800541
VVKDKLYDFT	10	Unmodified	_VVKDKLYDFT_					0	0	0			REV__ENST00000338366.5_1_1:109606819-109606927:-|nuORF	REV__ENST00000338366.5_1_1:109606819-109606927:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	409.8916320800781	3	409.892173	1226.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.712	1	14.712	14.212	15.212	0								0	0	0	0.4201	1	3169	3169		22.58	4.3176	1		+		48459	18429	32101	32237	49060	49060					0.05042836991742661
VVKDLLEVM	9	Unmodified	_VVKDLLEVM_					0	0	0		ENST00000418194.6_1_2:174774940-174777875:-|nuORF	ENST00000418194.6_1_2:174774940-174777875:-|nuORF	ENST00000418194.6_1_2:174774940-174777875:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3031616210938	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.861	1	48.861	48.361	49.361	0								0	0	0	0.35507	1	15337	15337		24.203	2.5004	1				48460	9378	32102	32238	49061	49061					0.06840724545213561
VVKEGSDRLQ	10	Unmodified	_VVKEGSDRLQ_					0	0	0			REV__ENSG00000175467|ENST00000312397|SART1	REV__ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.8145751953125	2	565.811845	1129.60914	3.4711	0.001964	1.0753	0.00060842	4.5464	0.0025724	565.8124275417578	30.073	0.46149	30.073	29.963	30.425	0					29	9	5	0	0	0	0.19191	1	11079	11079		80.455	27.518	1	2938600			48461	16613	32103	32239	49062	49062					0.049516115293727125
VVKEQNTDSF	10	Unmodified	_VVKEQNTDSF_					0	0	0			REV__ENSG00000170222|ENST00000379774|ADPRM	REV__ENSG00000170222|ENST00000379774|ADPRM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	389.52813720703125	3	389.527782	1165.56152	-0.033913	-1.321E-05	0.76864	0.00029941	0.73473	0.0002862	389.52801910508595	32.111	0.11342	32.111	32.038	32.151	0					8	4	2	0	0	0	0.64162	1	10348	10348		29.17	5.7921	1	103190	+		48462	16356	32104	32240	49063	49063					-0.014640874614769928
VVKFDPQI	8	Unmodified	_VVKFDPQI_					0	0	0			REV__ENST00000556170.5_1_14:75573136-75593624:-|nuORF	REV__ENST00000556170.5_1_14:75573136-75593624:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	473.27581787109375	2	473.273835	944.533118	3.7092	0.0017554	-0.35326	-0.00016719	3.3559	0.0015883	473.2737275385933	34.568	0.32394	34.568	34.455	34.779	0					20	14	2	0	0	0	0.64096	1	11666	11666		42.474	42.474	1	106950	+		48463	20251	32105	32241	49064	49064					0.05863259419891165
VVKFLQDTL	9	Unmodified	_VVKFLQDTL_					0	0	0		DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;DOCK2|p.M1388Gfs*7|1|0.05|ENSG00000134516|chr5:170050344-170050345|-/AGGATGCTCATTAGAGATTT|frameshift_variant;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;nc|ENSG00000150760|Q14185|DOCK1	DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8140258789062	2	531.813325	1061.6121	0.1215	6.4617E-05	0.78968	0.00041996	0.91118	0.00048458	531.8138419014454	28.727	0.25469	28.727	28.591	28.846	0					11	6	2	0	0	0	0.19605	1	10193	10193		62.107	10.772	1	247290			48464	836;4934	32106	32242	49065	49065					0.08375486654176711
VVKFRWNG	8	Unmodified	_VVKFRWNG_					0	0	0		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.28289794921875	2	503.285069	1004.55558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.937	1	32.937	32.437	33.437	0								0	0	0	1.7419	1	12138	12138		44.531	3.9584	1				48465	3384	32107	32243	49066	49066					0.0534890360817144
VVKFVADPPK	10	Unmodified	_VVKFVADPPK_					0	0	0			REV__ENSG00000170214|ENST00000306675|ADRA1B	REV__ENSG00000170214|ENST00000306675|ADRA1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.90447998046875	3	367.221853	1098.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.037	1	14.037	13.537	14.537	0								0	0	0	0.4044	1	3402	3402		29.17	14.476	1		+		48466	16355	32108	32244	49067	49067					0.09835479408116043
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.7616882324219	2	414.761761	827.508969	-0.76775	-0.00031843	0.72233	0.0002996	-0.045419	-1.8838E-05	414.76191533367785	50.892	0.29445	50.892	50.794	51.089	0					30	18	3	0	0	0	0.7914	1	18251	18251		14.664	0	1	295980	+		48467	17397	32109	32245	49068	49068					0.08831463776903092
VVKGVKSMKAM	11	Unmodified	_VVKGVKSMKAM_					0	0	0			REV__ENST00000476939.5_1_1:60125899-60232874:+|nuORF	REV__ENST00000476939.5_1_1:60125899-60232874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.342529296875	2	589.343412	1176.67227	0.36806	0.00021691	-0.15585	-9.1848E-05	0.21221	0.00012506	589.3433029545495	52.813	0.63172	52.813	52.493	53.124	0					72	40	2	0	0	0	0.78498	1	16192	16192		18.262	0.79408	1	119360	+		48468	16465	32110	32246	49069	49069					0.09100137721407009
VVKGVWQLTTG	11	Unmodified	_VVKGVWQLTTG_					0	0	0			REV__ENST00000370069.5_1_20:62219030-62219531:-|nuORF	REV__ENST00000370069.5_1_20:62219030-62219531:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	396.5641174316406	3	396.564279	1186.67101	-0.27108	-0.0001075	0.0615	2.4389E-05	-0.20958	-8.3112E-05	396.5641685332507	28.587	0.25558	28.587	28.474	28.73	0					15	6	4	0	0	0	0.66915	1	10110	10110		30.569	1.0181	1	549720	+		48469	18629	32111	32247	49070	49070					0.08513962948495646
VVKKIETRDGK	11	Unmodified	_VVKKIETRDGK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	424.92620849609375	3	424.925988	1271.75613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.342	1	14.342	13.842	14.842	0								0	0	0	0.37939	1	3545	3545		41.08	11.529	1			+	48470	11643	32112	32248	49071	49071					0.1311270841431451
VVKKRTHWIYL	11	Unmodified	_VVKKRTHWIYL_					0	0	0		TTC31|p.P213Hfs*46|1|0.33|ENSG00000115282|chr2:74491324-74491324|C/-|frameshift_variant	TTC31|p.P213Hfs*46|1|0.33|ENSG00000115282|chr2:74491324-74491324|C/-|frameshift_variant	TTC31|p.P213Hfs*46|1|0.33|ENSG00000115282|chr2:74491324-74491324|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	481.62738037109375	3	481.625873	1441.85579	3.4686	0.0016706	-0.9598	-0.00046227	2.5088	0.0012083	481.62539227332763	18.004	0.12689	18.004	17.924	18.051	0					5	3	2	0	0	0	0.82318	1	4640	4640		10.104	1.3046	1	44523			48471	23076	32113	32249	49072	49072					0.15253570818958906
VVKLFSEK	8	Unmodified	_VVKLFSEK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.28924560546875	2	475.289485	948.564418	-0.60941	-0.00028965	-0.42608	-0.00020251	-1.0355	-0.00049216	475.28927489394044	39.709	0.15718	39.709	39.656	39.813	0					5	3	2	0	0	0	0.68432	1	15726	15726		35.618	5.1146	1	49834			48472	5411	32114	32250	49073	49073					0.08807832453999254
VVKMLCHLT	9	Carbamidomethyl (C)	_VVKMLC(Carbamidomethyl (C))HLT_	VVKMLC(1)HLT		VVKMLC(56)HLT		0	1	0			REV__ENSG00000090863|ENST00000422840|GLG1	REV__ENSG00000090863|ENST00000422840|GLG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	550.8035888671875	2	550.80138	1099.58821	0.16871	9.2925E-05	3.77	0.0020765	3.9387	0.0021695	550.8033926709745	19.701	0.11558	19.701	19.642	19.758	0					4	2	2	0	0	0	0.25109	1	6287	6287		55.504	6.2934	1	838610	+		48473	13430	32115	32251	49074	49074	516				0.042396066244918984
VVKNYYLN	8	Unmodified	_VVKNYYLN_					0	0	0		nc|ENSG00000183833|Q7Z4T9-8|CFAP91;nc|ENSG00000183833|Q7Z4T9-6|CFAP91;nc|ENSG00000183833|Q7Z4T9-3|CFAP91;ENST00000482927.5_1_3:119422024-119469941:+|nuORF;ENSG00000183833|ENST00000273390|CFAP91	nc|ENSG00000183833|Q7Z4T9-8|CFAP91	nc|ENSG00000183833|Q7Z4T9-8|CFAP91	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.27685546875	2	506.776742	1011.53893	-1.9382	-0.00098224	-2.2481	-0.0011393	-4.1864	-0.0021215	506.7757128179056	26.887	0.31137	26.887	26.625	26.936	0					15	7	3	0	0	0	0.65276	1	8679	8679		40.573	1.7665	1	86258			48474	11676	32116	32252	49075	49075					0.03362357931553106
VVKPKKAAPK	10	Unmodified	_VVKPKKAAPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.3611450195312	2	533.360776	1064.707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.999	1	12.999	12.499	13.499	0								0	0	0	0.36846	1	2859	2859		35.618	0	1				48475	7222	32117	32253	49076	49076					0.17723464916025478
VVKPKKAAPK	10	Unmodified	_VVKPKKAAPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.3616943359375	2	533.360776	1064.707	1.0947	0.00058388	0.6339	0.0003381	1.7286	0.00092197	533.3611957536709	12.95	0.10201	12.95	12.899	13.001	0					4	2	2	0	0	0	0.12383	1	3050	3050		79.713	24.936	1	83405			48476	7222	32117	32253	49077	49077					0.17723464916025478
VVKPKKAAPK	10	Unmodified	_VVKPKKAAPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	355.9096374511719	3	355.90961	1064.707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.932	1	12.932	12.432	13.432	0								0	0	0	0.16204	1	2877	2877		68.846	14.124	1				48477	7222	32117	32253	49078	49078					0.17723464916025478
VVKPPGSSL	9	Unmodified	_VVKPPGSSL_					0	0	0		ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.265869140625	2	442.26601	882.517468	-0.33606	-0.00014863	0.062777	2.7764E-05	-0.27329	-0.00012086	442.2660469639923	26.531	0.8147	26.531	25.946	26.76	0					48	19	4	0	0	0	0.21263	1	9094	9094		60.118	3.3972	1	2984600			48478	5627	32118	32254	49079	49079					0.07150972902854846
VVKPPGSSL	9	Unmodified	_VVKPPGSSL_					0	0	0		ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.26580810546875	2	442.26601	882.517468	0.070144	3.1022E-05	-0.32363	-0.00014313	-0.25348	-0.00011211	442.2658485425761	26.551	1.1411	26.551	25.721	26.862	0					59	21	4	0	0	0	0.048471	1	9502	9502		95.815	21.56	1	3826700			48479	5627	32118	32254	49080	49080					0.07150972902854846
VVKRIFSK	8	Unmodified	_VVKRIFSK_					0	0	0		DEPDC7|p.F420Lfs*11|1|0.37|ENSG00000121690|chr11:33032786-33032786|T/-|frameshift_variant;nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7	DEPDC7|p.F420Lfs*11|1|0.37|ENSG00000121690|chr11:33032786-33032786|T/-|frameshift_variant	DEPDC7|p.F420Lfs*11|1|0.37|ENSG00000121690|chr11:33032786-33032786|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.8185729980469	2	488.818744	975.622936	-0.41146	-0.00020113	-0.17259	-8.4367E-05	-0.58405	-0.0002855	488.81869907273085	18.123	0.22873	18.123	18.025	18.254	0					10	5	3	0	0	0	0.3961	1	5252	5252		71.296	2.5089	1	851240			48480	773	32119	32255	49081	49081					0.13414933819137786
VVKSLAEKK	9	Unmodified	_VVKSLAEKK_					0	0	0			REV__ENSG00000125351|ENST00000276201|UPF3B	REV__ENSG00000125351|ENST00000276201|UPF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	334.5498962402344	3	334.54997	1000.62808	-0.010813	-3.6175E-06	-0.12966	-4.3376E-05	-0.14047	-4.6994E-05	334.54989540520535	16.259	0.21869	16.259	16.149	16.367	0					6	4	2	0	0	0	0.32741	1	4475	4475		54.776	0	1	1675700	+		48481	14426	32120	32256	49082	49082					0.12779192891071034
VVKTLAGK	8	Unmodified	_VVKTLAGK_					0	0	0			REV__OR1F1|p.K302T|1|0.21|ENSG00000168124|chr16:3205151-3205151|A/C|missense_variant	REV__OR1F1|p.K302T|1|0.21|ENSG00000168124|chr16:3205151-3205151|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.2710266113281	2	408.271096	814.527639	1.1777	0.00048082	-1.3658	-0.00055763	-0.18813	-7.6809E-05	408.270509612396	22.261	0.21349	22.261	22.153	22.367	0					6	4	2	0	0	0	0.39125	1	7520	7520		71.877	8.5712	1	1201400	+		48482	21318	32121	32257	49083	49083					0.11295580628086554
VVKVDYGKK	9	Unmodified	_VVKVDYGKK_					0	0	0			REV__tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	REV__tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.31396484375	2	518.313492	1034.61243	0.46349	0.00024023	-0.16587	-8.5974E-05	0.29762	0.00015426	518.3135709428226	15.769	0.10592	15.769	15.705	15.811	0					7	4	2	0	0	0	0.48389	1	3495	3495		34.173	2.6427	1	64169	+		48483	21896	32122	32258	49084	49084					0.09650906374031365
VVKYSSSK	8	Unmodified	_VVKYSSSK_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	449.25531005859375	2	449.255643	896.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.721	1	15.721	15.221	16.221	0								0	0	0	1.7419	1	3468	3468		26.693	0	1		+		48484	16387	32123	32259	49085	49085					0.04434382523197655
VVLAGACCLR	10	Unmodified	_VVLAGACCLR_					0	0	0		ENST00000553520.1_1_14:39735777-39736195:-|nuORF	ENST00000553520.1_1_14:39735777-39736195:-|nuORF	ENST00000553520.1_1_14:39735777-39736195:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7930908203125	2	502.772622	1003.53069	0.724	0.00036401	3.1129	0.0015651	3.8369	0.0019291	502.77415847362215	34.881	0.39185	34.881	34.772	35.164	0					16	10	2	0	0	0	0.42631	1	13063	13063		53.351	20.539	1	85916			48485	10637	32124	32260	49086	49086					0.029067644189240127
VVLDKGSVK	9	Unmodified	_VVLDKGSVK_					0	0	0		ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.7921142578125	2	472.792392	943.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.93	1	19.93	19.43	20.43	0								0	0	0	0.061959	1	6245	6245		82.75	16.321	1				48486	10530	32126	32261	49087	49087					0.0961893096566655
VVLDQTGVSK	10	Unmodified	_VVLDQTGVSK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENST00000464093.1_1_1:28887839-28891347:+|nuORF;nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2985229492188	2	523.298039	1044.58152	1.7006	0.00088992	-1.1798	-0.00061741	0.52075	0.00027251	523.2974695662149	26.087	0.13864	26.087	25.957	26.096	0					5	3	2	0	0	0	0.071575	1	8949	8949		102.06	56.089	1	762700			48487	6792	32127	32262	49088	49088					0.061017082691250835
VVLDQTGVSK	10	Unmodified	_VVLDQTGVSK_					0	0	0		TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant;ENSG00000180098|ENST00000373830|TRNAU1AP;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENST00000464093.1_1_1:28887839-28891347:+|nuORF;nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	TRNAU1AP|p.Q222Sfs*29|1|0.24|ENSG00000180098|chr1:28571305-28571305|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2981567382812	2	523.298039	1044.58152	0.47387	0.00024798	0.45582	0.00023853	0.9297	0.00048651	523.2983354749974	26.009	0.26937	26.009	25.898	26.168	0					13	5	3	0	0	0	0.13022	1	9147	9147		90.149	47.811	1	454560			48488	6792	32127	32262	49089	49089					0.061017082691250835
VVLEKAMHK	9	Unmodified	_VVLEKAMHK_					0	0	0		RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.8076782226562	2	527.807519	1053.60049	0.55229	0.0002915	-0.36445	-0.00019236	0.18784	9.9145E-05	527.8073358170334	19.336	0.12207	19.336	19.245	19.368	0					9	3	3	0	0	0	0.078509	1	4969	4969		85.161	29.657	1	227920			48489	3805	32128	32263	49090	49090					0.0758296635917759
VVLEKAMHK	9	Unmodified	_VVLEKAMHK_					0	0	0		RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.8076171875	2	527.807519	1053.60049	0.10638	5.6148E-05	-0.095295	-5.0298E-05	0.011084	5.85E-06	527.807442210809	19.652	0.23033	19.652	19.554	19.784	0					13	5	4	0	0	0	0.035062	1	5978	5978		104.06	32.761	1	2032900			48490	3805	32128	32263	49091	49091					0.0758296635917759
VVLEKAMHK	9	Unmodified	_VVLEKAMHK_					0	0	0		RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	352.2074279785156	3	352.207438	1053.60049	-0.049013	-1.7263E-05	-0.46168	-0.00016261	-0.51069	-0.00017987	352.20739508699836	19.501	0.21436	19.501	19.442	19.656	0					12	4	4	0	0	0	0.43426	1	6053	6053		54.776	16.965	1	954270			48491	3805	32128	32263	49092	49092					0.0758296635917759
VVLENAAKK	9	Unmodified	_VVLENAAKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	324.5341491699219	3	324.53432	970.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.029	1	18.029	17.529	18.529	0								0	0	0	0.35507	1	4422	4422		47.657	23.138	1				48492	6325	32129	32264	49093	49093					0.09466333339935318
VVLENAAKK	9	Unmodified	_VVLENAAKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.297607421875	2	486.297842	970.581131	0.012112	5.8901E-06	-0.51019	-0.0002481	-0.49808	-0.00024221	486.2976157134856	17.996	0.16087	17.996	17.945	18.106	0					9	4	3	0	0	0	0.032052	1	4410	4410		107.01	38.523	1	412330			48493	6325	32129	32264	49094	49094					0.09466333339935318
VVLENAAKK	9	Unmodified	_VVLENAAKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.2976379394531	2	486.297842	970.581131	-0.28906	-0.00014057	-0.10625	-5.1668E-05	-0.39531	-0.00019224	486.29780974965615	18.334	0.23535	18.334	18.237	18.473	0					9	5	2	0	0	0	0.0097668	1	5351	5351		141.52	53.766	1	3860300			48494	6325	32129	32264	49095	49095					0.09466333339935318
VVLENAAKK	9	Unmodified	_VVLENAAKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.2975769042969	2	486.297842	970.581131	-0.85421	-0.0004154	0.16745	8.1431E-05	-0.68676	-0.00033397	486.2980683609679	18.021	0.12296	18.021	17.941	18.064	0					6	3	2	0	0	0	0.016683	1	4643	4643		127.46	39.707	1	671500			48495	6325	32129	32264	49096	49096					0.09466333339935318
VVLENAAKK	9	Unmodified	_VVLENAAKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2980651855469	2	486.297842	970.581131	-0.68751	-0.00033433	1.0063	0.00048936	0.31879	0.00015502	486.29831410974793	18.284	0.22082	18.284	18.173	18.394	0					10	4	3	0	0	0	0.0067848	1	5594	5594		150.36	62.607	1	3286900			48496	6325	32129	32264	49097	49097					0.09466333339935318
VVLENAAKK	9	Unmodified	_VVLENAAKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	324.5340270996094	3	324.53432	970.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.098	1	18.098	17.598	18.598	0								0	0	0	0.30835	1	4655	4655		49.442	24.922	1				48497	6325	32129	32264	49098	49098					0.09466333339935318
VVLENAAKK	9	Unmodified	_VVLENAAKK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	324.5342712402344	3	324.53432	970.581131	0.0088223	2.8631E-06	0.14289	4.6371E-05	0.15171	4.9235E-05	324.5342926869276	18.279	0.26299	18.279	18.175	18.438	0					8	5	3	0	0	0	0.35045	1	5433	5433		62.107	16.155	1	909230			48498	6325	32129	32264	49099	49099					0.09466333339935318
VVLENYYK	8	Unmodified	_VVLENYYK_					0	0	0		VANGL1|p.L451Cfs*21|1|0.34|ENSG00000173218|chr1:115691153-115691153|C/-|frameshift_variant;nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1	VANGL1|p.L451Cfs*21|1|0.34|ENSG00000173218|chr1:115691153-115691153|C/-|frameshift_variant	VANGL1|p.L451Cfs*21|1|0.34|ENSG00000173218|chr1:115691153-115691153|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	514.2769165039062	2	514.276575	1026.5386	-0.18652	-9.5921E-05	0.8446	0.00043436	0.65809	0.00033844	514.2768713283747	31.352	0.18478	31.352	31.275	31.46	0					17	7	3	0	0	0	0.41701	1	10377	10377		68.787	10.005	1	205890			48499	6414	32130	32265	49100	49100					0.026389382116803972
VVLFLIEQ	8	Unmodified	_VVLFLIEQ_					0	0	0		ENSG00000106013|ENST00000265224|ANKRD7;nc|ENSG00000106013|Q92527-2|ANKRD7	ENSG00000106013|ENST00000265224|ANKRD7	ENSG00000106013|ENST00000265224|ANKRD7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	480.7893371582031	2	480.791861	959.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.169	1	18.169	17.669	18.669	0								0	0	0	1.7419	1	4689	4689		32.812	0.061884	1				48500	2415	32131	32266	49101	49101					0.08776716596753431
VVLGLVQSL	9	Unmodified	_VVLGLVQSL_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8;ADCY8|p.A1194V|1|0.21|ENSG00000155897|chr8:130780565-130780565|G/A|missense_variant	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.29718017578125	2	464.29731	926.580068	-0.14106	-6.5492E-05	-0.17034	-7.9089E-05	-0.3114	-0.00014458	464.2972514504601	32.796	0.33374	32.796	32.567	32.9	0					12	8	2	0	0	0	0.16002	1	12458	12458		66.429	2.222	1	127980			48501	5142	32132	32267	49102	49102					0.1138411897103424
VVLGLVQSL	9	Unmodified	_VVLGLVQSL_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8;ADCY8|p.A1194V|1|0.21|ENSG00000155897|chr8:130780565-130780565|G/A|missense_variant	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.297119140625	2	464.29731	926.580068	-0.48352	-0.0002245	0.29958	0.00013909	-0.18394	-8.5402E-05	464.2973598777272	32.766	0.31858	32.766	32.573	32.892	0					13	6	3	0	0	0	0.51991	1	12376	12376		30.318	3.6248	1	241350			48502	5142	32132	32267	49103	49103					0.1138411897103424
VVLGNIIKK	9	Unmodified	_VVLGNIIKK_					0	0	0		ENSG00000069424|ENST00000378083|KCNAB2;nc|ENSG00000069424|Q13303-4|KCNAB2;nc|ENSG00000069424|Q13303-2|KCNAB2;nc|ENSG00000069424|Q13303|KCNAB2;nc|ENSG00000069424|Q13303-5|KCNAB2	ENSG00000069424|ENST00000378083|KCNAB2	ENSG00000069424|ENST00000378083|KCNAB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	328.5584411621094	3	328.558577	982.653902	0.0042297	1.3897E-06	0.30238	9.9351E-05	0.30661	0.00010074	328.5585212854176	29.805	0.11407	29.805	29.748	29.862	0					4	2	2	0	0	0	0.33044	1	10977	10977		47.657	13.485	1	90420			48503	1435	32133	32268	49104	49104					0.1618808713335511
VVLGSGGVGK	10	Unmodified	_VVLGSGGVGK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;ENST00000535492.5_2_12:69042504-69047907:+|nuORF;ENST00000501412.2_1_12:69042504-69042582:+|nuORF;RAP2B|p.F39Lfs*6|1|0.34|ENSG00000181467|chr3:153162808-153162809|TT/-|frameshift_variant;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	436.76361083984375	2	436.763635	871.512717	0.23656	0.00010332	-0.47336	-0.00020675	-0.23681	-0.00010343	436.7635697608338	24.167	0.13073	24.167	24.095	24.225	0					7	4	2	0	0	0	0.097781	1	7093	7093		95.815	0	1	125620			48504	2983;6854	32134	32269	49105	49105					0.07182088760100669
VVLGSGGVGK	10	Unmodified	_VVLGSGGVGK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;ENST00000535492.5_2_12:69042504-69047907:+|nuORF;ENST00000501412.2_1_12:69042504-69042582:+|nuORF;RAP2B|p.F39Lfs*6|1|0.34|ENSG00000181467|chr3:153162808-153162809|TT/-|frameshift_variant;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	436.7634582519531	2	436.763635	871.512717	-0.41505	-0.00018128	-0.028898	-1.2622E-05	-0.44394	-0.0001939	436.7636656898587	24.419	0.21813	24.419	24.31	24.528	0					7	4	2	0	0	0	0.15878	1	8556	8556		85.161	0	1	459750			48505	2983;6854	32134	32269	49106	49106					0.07182088760100669
VVLGSGGVGK	10	Unmodified	_VVLGSGGVGK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;ENST00000535492.5_2_12:69042504-69047907:+|nuORF;ENST00000501412.2_1_12:69042504-69042582:+|nuORF;RAP2B|p.F39Lfs*6|1|0.34|ENSG00000181467|chr3:153162808-153162809|TT/-|frameshift_variant;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.76385498046875	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.264	1	24.264	23.764	24.764	0								0	0	0	0.30913	1	7539	7539		49.442	0	1				48506	2983;6854	32134	32269	49107	49107					0.07182088760100669
VVLGSGGVGK	10	Unmodified	_VVLGSGGVGK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;ENST00000535492.5_2_12:69042504-69047907:+|nuORF;ENST00000501412.2_1_12:69042504-69042582:+|nuORF;RAP2B|p.F39Lfs*6|1|0.34|ENSG00000181467|chr3:153162808-153162809|TT/-|frameshift_variant;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7633361816406	2	436.763635	871.512717	-0.64455	-0.00028152	0.35536	0.00015521	-0.28919	-0.00012631	436.76378897898894	24.226	0.22796	24.226	24.172	24.4	0					6	5	2	0	0	0	0.36476	1	7532	7532		60.118	0	1	99303			48507	2983;6854	32134	32269	49108	49108					0.07182088760100669
VVLGSGGVGK	10	Unmodified	_VVLGSGGVGK_					0	0	0		ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;ENST00000535492.5_2_12:69042504-69047907:+|nuORF;ENST00000501412.2_1_12:69042504-69042582:+|nuORF;RAP2B|p.F39Lfs*6|1|0.34|ENSG00000181467|chr3:153162808-153162809|TT/-|frameshift_variant;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF;ENSG00000181467|ENST00000323534|RAP2B	ENST00000494982.1_1_1:112233982-112249293:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	436.7633972167969	2	436.763635	871.512717	-0.55239	-0.00024127	-0.032032	-1.399E-05	-0.58442	-0.00025526	436.76358160414645	24.388	0.21799	24.388	24.278	24.496	0					12	4	4	0	0	0	0.15878	1	8416	8416		85.161	0	1	781720			48508	2983;6854	32134	32269	49109	49109					0.07182088760100669
VVLGTGYKL	9	Unmodified	_VVLGTGYKL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.2890625	2	475.289485	948.564418	0.31822	0.00015125	-0.57134	-0.00027155	-0.25312	-0.00012031	475.28890810822406	39.815	0.14778	39.815	39.744	39.891	0					7	5	2	0	0	0	0.33044	1	15166	15166		47.657	6.8792	1	35459			48509	4207	32135	32270	49110	49110					0.08807832453999254
VVLGVGVAGL	10	Unmodified	_VVLGVGVAGL_					0	0	0		ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.2888488769531	2	442.284203	882.553853	0.57475	0.0002542	-0.5638	-0.00024936	0.010946	4.8414E-06	442.2839170976413	33.584	1.0096	33.584	33.182	34.192	0					67	26	4	0	0	0	0.21242	1	12584	12584		77.944	0	1	9659600			48510	6232	32136	32271	49111	49111					0.10787849799555715
VVLIGGKP	8	Unmodified	_VVLIGGKP_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	391.7615051269531	2	391.760364	781.506175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.922	1	26.922	26.422	27.422	0								0	0	0	1.7419	1	8239	8239		15.636	0	1				48511	5762	32137	32272	49112	49112					0.10668195599373576
VVLKCIHY	8	Unmodified	_VVLKCIHY_					0	0	0			REV__ENST00000392663.6_1_2:170350320-170356023:+|nuORF	REV__ENST00000392663.6_1_2:170350320-170356023:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.7790222167969	2	487.778231	973.541908	-0.065711	-3.2053E-05	1.7414	0.00084944	1.6757	0.00081738	487.77895323913185	21.882	0.12437	21.882	21.801	21.926	0					6	3	2	0	0	0	0.60719	1	6107	6107		46.766	8.9549	1	96131	+		48512	18833	32138	32273	49113	49113					0.054079097847193225
VVLKLELDI	9	Unmodified	_VVLKLELDI_					0	0	0			REV__AFAP1L1|p.A692V|1|0.21|ENSG00000157510|chr5:149332794-149332794|C/T|missense_variant	REV__AFAP1L1|p.A692V|1|0.21|ENSG00000157510|chr5:149332794-149332794|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	347.8905029296875	3	347.889992	1040.64815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.242	1	30.242	29.742	30.742	0								0	0	0	0.22284	1	11172	11172		47.657	3.2801	1		+		48513	12097	32139	32274	49114	49114					0.12944943831030287
VVLLQTSPY	9	Unmodified	_VVLLQTSPY_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;TCF25|p.S448Lfs*3|1|0.21|ENSG00000141002|chr16:89900755-89900755|T/-|frameshift_variant	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2920837402344	2	510.292225	1018.5699	-0.4443	-0.00022672	0.77044	0.00039315	0.32614	0.00016643	510.29254809449833	37.578	0.22206	37.578	37.506	37.728	0					30	12	3	0	0	0	0.33044	1	12698	12698		47.657	8.4045	1	324550			48514	4420	32140	32275	49115	49115					0.06135511245804537
VVLLSSSE	8	Unmodified	_VVLLSSSE_					0	0	0		ATP8A2|p.S260Kfs*8|1|0.35|ENSG00000132932|chr13:25542041-25542042|-/A|frameshift_variant;nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2	ATP8A2|p.S260Kfs*8|1|0.35|ENSG00000132932|chr13:25542041-25542042|-/A|frameshift_variant	ATP8A2|p.S260Kfs*8|1|0.35|ENSG00000132932|chr13:25542041-25542042|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.23486328125	2	417.234376	832.454199	-1.3991	-0.00058376	3.1048	0.0012954	1.7057	0.00071168	417.2354978869899	16.512	0.13029	16.512	16.43	16.56	0					6	3	2	0	0	0	0.75243	1	3989	3989		26.796	0	1	314340			48515	258	32141	32276	49116	49116					0.031269873949554494
VVLLVINHK	9	Unmodified	_VVLLVINHK_					0	0	0		ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.8389282226562	2	517.839677	1033.6648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.31	1	32.31	31.81	32.81	0								0	0	0	0.27166	1	10437	10437		40.573	3.4135	1				48516	2755	32142	32277	49117	49117					0.1493148950764862
VVLLVINHK	9	Unmodified	_VVLLVINHK_					0	0	0		ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	ENSG00000112697|ENST00000230461|TMEM30A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.5621337890625	3	345.56221	1033.6648	0.50343	0.00017397	-0.30707	-0.00010611	0.19637	6.7858E-05	345.56205395972677	32.596	0.21723	32.596	32.492	32.709	0					13	5	3	0	0	0	0.5654	1	12005	12005		40.778	17.255	1	210260			48517	2755	32142	32277	49118	49118					0.1493148950764862
VVLNQINKNF	10	Unmodified	_VVLNQINKNF_					0	0	0		tr|U7SN32|U7SN32_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01849PE=4SV=1	tr|U7SN32|U7SN32_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01849PE=4SV=1	tr|U7SN32|U7SN32_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01849PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.8974304199219	3	396.896029	1187.66626	0.63279	0.00025115	2.7155	0.0010778	3.3483	0.0013289	396.89705951678025	26.268	0.20817	26.268	26.168	26.376	0					10	4	3	0	0	0	0.50881	1	9396	9396		44.377	10.456	1	293830			48518	22672	32143	32278	49119	49119					0.07993078805748155
VVLNTVVYR	9	Unmodified	_VVLNTVVYR_					0	0	0		ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.8197631835938	2	531.818941	1061.62333	2.4102	0.0012818	-1.3064	-0.00069476	1.1038	0.00058704	531.8182783331365	34.298	0.20687	34.298	34.219	34.426	0					10	5	2	0	0	0	0.07136	1	12793	12793		87.696	23.489	1	224790			48519	9370	32144	32279	49120	49120					0.09498308748334239
VVLPRRTY	8	Unmodified	_VVLPRRTY_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.3050537109375	2	502.306001	1002.59745	-2.0787	-0.0010441	0.10497	5.2726E-05	-1.9737	-0.00099141	502.30599072262316	31.955	0.12181	31.955	31.911	32.033	0					5	3	2	0	0	0	0.58597	1	11066	11066		50.025	0	1	46842	+		48520	15604	32145	32280	49121	49121					0.09625459296694316
VVLQGAGCR	9	Carbamidomethyl (C)	_VVLQGAGC(Carbamidomethyl (C))R_	VVLQGAGC(1)R		VVLQGAGC(48)R		0	1	0			REV__ENST00000518563.5_3_8:42249167-42251383:+|nuORF	REV__ENST00000518563.5_3_8:42249167-42251383:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	481.263916015625	2	480.258194	958.501834	0.50395	0.00024203	-4.0033	-0.0019226	-3.4993	-0.0016806	480.2553078225868	23.222	0.48693	23.222	22.93	23.417	0					20	11	3	0	0	0	0.32741	1	7591	7591		47.916	7.1374	1	490020	+		48521	19929	32146	32281	49122	49122	701				0.02092363114161344
VVLQRMCGA	9	Carbamidomethyl (C)	_VVLQRMC(Carbamidomethyl (C))GA_	VVLQRMC(1)GA		VVLQRMC(63)GA		0	1	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2877197265625	2	517.267704	1032.52086	1.5171	0.00078477	0.88989	0.00046031	2.407	0.0012451	517.268517763024	17.508	0.34995	17.508	17.251	17.6	0					11	7	3	0	0	0	0.18605	1	5131	5131		63.306	15.347	1	94451	+		48522	21069	32147	32282	49123	49123	726				0.005895764135630088
VVLRCLSKV	9	Unmodified	_VVLRCLSKV_					0	0	0			REV__ENST00000513912.1_1_5:140073076-140073352:+|nuORF	REV__ENST00000513912.1_1_5:140073076-140073352:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	339.5475158691406	3	339.547684	1015.62122	0.22536	7.6522E-05	-0.64439	-0.0002188	-0.41902	-0.00014228	339.5475270687865	31.844	0.35123	31.844	31.771	32.122	0					29	14	3	0	0	0	0.61124	1	10247	10247		13.454	0	1	395330	+		48523	19866	32148	32283	49124	49124					0.11403556738866882
VVLRDGRAKL	10	Unmodified	_VVLRDGRAKL_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ALOX5|p.M383Ifs*19|1|0.12|ENSG00000012779|chr10:45440597-45440597|G/-|frameshift_variant;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.8565673828125	2	563.85639	1125.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.211	1	44.211	43.711	44.711	0								0	0	0	0.28704	1	16599	16599		52.937	0	1				48524	1058	32149	32284	49125	49125					0.14040491279547496
VVLRLASLL	9	Unmodified	_VVLRLASLL_					0	0	0		ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	328.5585021972656	3	328.558577	982.653902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.902	1	29.902	29.402	30.402	0								0	0	0	0.3304	1	11122	11122		29.15	0	1				48525	6768	32150	32285	49126	49126					0.1618808713335511
VVLSPKQGQP	10	Unmodified	_VVLSPKQGQP_					0	0	0		nc|ENSG00000118407|Q7Z7B0-3|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;ENSG00000118407|ENST00000237172|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.54132080078125	3	351.541475	1051.60259	-0.83611	-0.00029393	0.29642	0.0001042	-0.53969	-0.00018972	351.5416281894279	23.184	0.10416	23.184	23.148	23.252	0					8	3	3	0	0	0	0.65051	1	6936	6936		28.081	1.3886	1	300730			48526	3072	32151	32286	49127	49127					0.07885718368675043
VVLSPKQGQP	10	Unmodified	_VVLSPKQGQP_					0	0	0		nc|ENSG00000118407|Q7Z7B0-3|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;ENSG00000118407|ENST00000237172|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.5413513183594	3	351.541475	1051.60259	1.4492	0.00050947	-1.6261	-0.00057165	-0.17687	-6.2176E-05	351.54089205007864	23.403	0.26674	23.403	23.246	23.513	0					12	5	3	0	0	0	0.60281	1	8071	8071		33.922	1.1711	1	997800			48527	3072	32151	32286	49128	49128					0.07885718368675043
VVLVHGVAAAG	11	Unmodified	_VVLVHGVAAAG_					0	0	0			REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7981872558594	2	496.798009	991.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.04	1	29.04	28.54	29.54	0								0	0	0	0.42301	1	9126	9126		31.955	0	1		+		48528	21132	32152	32287	49129	49129					0.08533753059805349
VVLVLVMKT	9	Unmodified	_VVLVLVMKT_					0	0	0			REV__ENSG00000152034|ENST00000281806|MCHR2	REV__ENSG00000152034|ENST00000281806|MCHR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.3236083984375	2	501.325014	1000.63547	-2.11	-0.0010578	-1.0225	-0.00051262	-3.1326	-0.0015704	501.3244695793423	40.755	0.15182	40.755	40.661	40.813	0					11	8	2	0	0	0	0.54267	1	14449	14449		27.882	11.409	1	85937	+		48529	15496	32153	32288	49130	49130					0.13518209167159512
VVLVVAFEGS	10	Unmodified	_VVLVVAFEGS_					0	0	0		SLC4A1|p.Q550Rfs*9|1|0.09|ENSG00000004939|chr17:44255826-44255826|T/-|frameshift_variant;nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1	SLC4A1|p.Q550Rfs*9|1|0.09|ENSG00000004939|chr17:44255826-44255826|T/-|frameshift_variant	SLC4A1|p.Q550Rfs*9|1|0.09|ENSG00000004939|chr17:44255826-44255826|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.7939147949219	2	510.292225	1018.5699	-1.8043	-0.0009207	1.5908	0.00081179	-0.21343	-0.00010891	510.2932725139051	37.582	0.21065	37.582	37.506	37.717	0					20	10	3	0	0	0	0.54387	1	13441	13441		40.573	6.4001	1	133960			48530	948	32154	32289	49131	49131					0.061355112458159056
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	609.35546875	2	609.355365	1216.69618	0.15722	9.5801E-05	-0.49504	-0.00030166	-0.33782	-0.00020586	609.3552802016153	19.293	0.12465	19.293	19.214	19.338	0					9	3	3	0	0	0	0.026261	1	4952	4952		109.83	65.453	1	523750			48531	7312	32155	32290	49132	49132					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.5725402832031	3	406.572669	1216.69618	0.64628	0.00026276	-1.3173	-0.00053558	-0.67102	-0.00027282	406.5722661191067	19.592	0.64146	19.592	19.094	19.735	0					15	6	5	0	0	0	0.061126	2	5947	5947;5993		99.788	37.622	1	6119900			48532	7312	32155	32290	49133;49134	49133					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.3554077148438	2	609.355365	1216.69618	-0.67846	-0.00041342	0.65823	0.00040109	-0.020232	-1.2328E-05	609.3558735389621	19.608	0.23822	19.608	19.508	19.746	0					16	5	4	0	0	0	5.2658E-05	1	5937	5937		133.75	75.506	1	4193500			48533	7312	32155	32290	49135	49135					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.3552856445312	2	609.355365	1216.69618	-0.62218	-0.00037913	0.37522	0.00022864	-0.24696	-0.00015049	609.3556660632713	19.28	0.11478	19.28	19.243	19.357	0					7	3	3	0	0	0	0.13149	1	5203	5203		92.239	47.862	1	243300			48534	7312	32155	32290	49136	49136					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	609.3563842773438	2	609.355365	1216.69618	0.46549	0.00028365	-0.80187	-0.00048863	-0.33638	-0.00020497	609.8562641116846	19.308	0.080639	19.308	19.232	19.312	0					4	2	2	0	0	0	0.53902	1	5196	5196		45.908	24.961	1	144650			48535	7312	32155	32290	49137	49137					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	406.572509765625	3	406.572669	1216.69618	0.04739	1.9268E-05	-0.93694	-0.00038093	-0.88955	-0.00036167	406.5724515275038	19.487	0.757	19.487	18.984	19.741	0					21	10	3	0	0	0	0.32196	1	6177	6177		60.167	28.533	1	16125000			48536	7312	32155	32290	49138	49138					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.3554077148438	2	609.355365	1216.69618	0.84703	0.00051614	-1.0253	-0.00062477	-0.17827	-0.00010863	609.3549327391704	19.47	0.21294	19.47	19.412	19.625	0					11	4	4	0	0	0	0.015994	1	6174	6174		105.17	52.228	1	2030500			48537	7312	32155	32290	49139	49139					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	609.3556518554688	2	609.355365	1216.69618	0.51138	0.00031161	-0.12166	-7.4136E-05	0.38971	0.00023747	609.3553439442134	19.503	0.16293	19.503	19.396	19.559	0					7	3	3	0	0	0	0.66612	1	6188	6188		41.08	15.017	1	622470			48538	7312	32155	32290	49140	49140					0.09649694479412574
VVMAADRSLKK	11	Unmodified	_VVMAADRSLKK_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	406.57257080078125	3	406.572669	1216.69618	-0.56329	-0.00022902	0.16428	6.679E-05	-0.39901	-0.00016223	406.572797399491	19.486	0.71058	19.486	18.946	19.656	0					16	10	3	0	0	0	0.52595	1	6050	6050		42.338	8.4164	1	2067900			48539	7312	32155	32290	49141	49141					0.09649694479412574
VVMADPKGK	9	Unmodified	_VVMADPKGK_					0	0	0		ENST00000469050.1_1_9:7798575-7833931:-|nuORF;ENST00000484082.1_1_9:7798575-7800059:-|nuORF;ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.764892578125	2	472.76532	943.516088	-0.34358	-0.00016243	-0.32283	-0.00015262	-0.66642	-0.00031506	472.7652108310579	17.295	0.22719	17.295	17.134	17.361	0					13	7	2	0	0	0	0.1424	1	4075	4075		69.628	29.055	1	706420			48540	4139	32156	32291	49142	49142					0.042070155424539735
VVMADPKGK	9	Unmodified	_VVMADPKGK_					0	0	0		ENST00000469050.1_1_9:7798575-7833931:-|nuORF;ENST00000484082.1_1_9:7798575-7800059:-|nuORF;ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7650451660156	2	472.76532	943.516088	-0.56184	-0.00026562	0.12052	5.6977E-05	-0.44132	-0.00020864	472.7653555132905	17.616	0.24207	17.616	17.415	17.658	0					12	6	2	0	0	0	0.035062	1	4974	4974		104.06	35.27	1	3302400			48541	4139	32156	32291	49143	49143					0.042070155424539735
VVMADPKGK	9	Unmodified	_VVMADPKGK_					0	0	0		ENST00000469050.1_1_9:7798575-7833931:-|nuORF;ENST00000484082.1_1_9:7798575-7800059:-|nuORF;ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.7649841308594	2	472.76532	943.516088	-0.71035	-0.00033583	0.5745	0.0002716	-0.13586	-6.4228E-05	472.7655305964751	17.353	0.21823	17.353	17.195	17.413	0					13	7	2	0	0	0	0.33044	1	4303	4303		47.657	17.154	1	489140			48542	4139	32156	32291	49144	49144					0.042070155424539735
VVMADPKGK	9	Unmodified	_VVMADPKGK_					0	0	0		ENST00000469050.1_1_9:7798575-7833931:-|nuORF;ENST00000484082.1_1_9:7798575-7800059:-|nuORF;ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	ENST00000469050.1_1_9:7798575-7833931:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.7651672363281	2	472.76532	943.516088	-0.69771	-0.00032985	0.45783	0.00021644	-0.23988	-0.00011341	472.7654867221156	17.575	0.35722	17.575	17.377	17.735	0					12	7	2	0	0	0	0.07136	1	5206	5206		87.696	37.672	1	3098200			48543	4139	32156	32291	49145	49145					0.042070155424539735
VVMENVGQQK	10	Unmodified	_VVMENVGQQK_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.2952270507812	2	566.294973	1130.57539	1.2006	0.00067992	-0.51626	-0.00029236	0.68438	0.00038756	566.2945751339855	23.294	0.12496	23.294	23.21	23.335	0					6	3	2	0	0	0	0.065778	1	6710	6710		104.01	23.559	1	133730			48544	942	32157	32292	49146	49146					0.015328667659787243
VVMENVGQQK	10	Unmodified	_VVMENVGQQK_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.2950439453125	2	566.294973	1130.57539	0.26511	0.00015013	0.18216	0.00010316	0.44727	0.00025329	566.2950665321869	23.601	0.21796	23.601	23.473	23.691	0					9	5	2	0	0	0	0.0010959	1	7842	7842		181.41	90.806	1	994790			48545	942	32157	32292	49147	49147					0.015328667659787243
VVMENVGQQK	10	Unmodified	_VVMENVGQQK_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.2948608398438	2	566.294973	1130.57539	0.23357	0.00013227	-1.337	-0.00075712	-1.1034	-0.00062485	566.2947815801208	23.537	0.26613	23.537	23.329	23.595	0					7	5	2	0	0	0	0.010349	1	8133	8133		141.52	50.255	1	274890			48546	942	32157	32292	49148	49148					0.015328667659787243
VVMEWAGVK	9	Unmodified	_VVMEWAGVK_					0	0	0		ENST00000531859.5_2_11:908570-908654:-|nuORF;ENST00000436108.6_1_11:908570-910828:-|nuORF;ENST00000528426.5_1_11:908570-910751:-|nuORF	ENST00000531859.5_2_11:908570-908654:-|nuORF	ENST00000531859.5_2_11:908570-908654:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.7730712890625	2	509.773145	1017.53174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.568	1	38.568	38.068	39.068	0								0	0	0	0.22284	1	15137	15137		47.657	24.615	1				48547	9527	32158	32293	49149	49149					0.023673020594856098
VVMFVAQVL	9	Oxidation (M)	_VVM(Oxidation (M))FVAQVL_		VVM(1)FVAQVL		VVM(52)FVAQVL	0	0	1		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.2921447753906	2	511.291171	1020.56779	-0.12852	-6.5712E-05	2.1717	0.0011104	2.0432	0.0010447	511.2917403974002	29.575	0.10567	29.575	29.514	29.62	0					8	3	3	0	0	0	0.27781	1	9340	9340		52.299	16.681	1	113860			48548	2409	32159	32294	49150	49150		103			0.058327592363411895
VVMGKQQSK	9	Unmodified	_VVMGKQQSK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7814025878906	2	502.781502	1003.54845	-0.06743	-3.3903E-05	-0.86596	-0.00043539	-0.93339	-0.00046929	502.7814937964644	14.102	0.18042	14.102	14.003	14.184	0					12	4	4	0	0	0	0.14603	1	3370	3370		68.787	20.871	1	547270			48549	4815	32160	32295	49151	49151					0.04681802945447089
VVMGKQQSK	9	Unmodified	_VVMGKQQSK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7814025878906	2	502.781502	1003.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.848	1	13.848	13.348	14.348	0								0	0	0	0.0089911	1	2904	2904		158.07	70.378	1				48550	4815	32160	32295	49152	49152					0.04681802945447089
VVMGKQQSK	9	Unmodified	_VVMGKQQSK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7814636230469	2	502.781502	1003.54845	0.98968	0.00049759	-1.0953	-0.0005507	-0.10562	-5.3105E-05	502.78107600033564	14.033	0.31079	14.033	13.873	14.184	0					13	6	3	0	0	0	0.003936	1	3565	3565		163.15	59.094	1	1649200			48551	4815	32160	32295	49153	49153					0.04681802945447089
VVMGKQQSK	9	Unmodified	_VVMGKQQSK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7817077636719	2	502.781502	1003.54845	-2.0614	-0.0010364	2.3857	0.0011995	0.32438	0.00016309	502.7826043311145	13.874	0.1451	13.874	13.808	13.953	0					12	7	3	0	0	0	0.010494	1	2841	2841		139.97	43.78	1	142250			48552	4815	32160	32295	49154	49154					0.04681802945447089
VVMGKQQSK	9	Unmodified	_VVMGKQQSK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7813720703125	2	502.781502	1003.54845	1.159	0.00058273	-1.0121	-0.00050887	0.1469	7.3859E-05	502.78099564809764	14.048	0.3137	14.048	13.994	14.308	0					8	6	2	0	0	0	1.5172E-08	1	3418	3418		219.56	92.103	1	794730			48553	4815	32160	32295	49155	49155					0.04681802945447089
VVMGKQQSKLK	11	Unmodified	_VVMGKQQSKLK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.9163513183594	3	415.916436	1244.72748	1.0457	0.00043494	-1.6416	-0.00068279	-0.59589	-0.00024784	415.9159183817701	17.108	0.097376	17.108	17.058	17.156	0					8	2	4	0	0	0	0.6208	1	4781	4781		35.178	7.0967	1	661490			48554	4815	32161	32296	49156	49156					0.11490267513522667
VVMGKQQSKLK	11	Unmodified	_VVMGKQQSKLK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	623.3706665039062	2	623.371015	1244.72748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.926	1	16.926	16.426	17.426	0								0	0	0	0.1298	1	4147	4147		79.489	28.296	1				48555	4815	32161	32296	49157	49157					0.11490267513522667
VVMGKQQSKLK	11	Unmodified	_VVMGKQQSKLK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.91650390625	3	415.916436	1244.72748	0.065997	2.7449E-05	-0.098519	-4.0976E-05	-0.032522	-1.3527E-05	415.9164859691088	17.072	0.11878	17.072	17.013	17.132	0					4	2	2	0	0	0	0.4771	1	5018	5018		45.908	15.339	1	170110			48556	4815	32161	32296	49158	49158					0.11490267513522667
VVMGKQQSKLK	11	Unmodified	_VVMGKQQSKLK_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	623.370849609375	2	623.371015	1244.72748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.112	1	17.112	16.612	17.612	0								0	0	0	0.044032	1	5024	5024		83.647	34.111	1				48557	4815	32161	32296	49159	49159					0.11490267513522667
VVMLPLGTGLC	11	Unmodified	_VVMLPLGTGLC_					0	0	0			REV__ENST00000589179.5_1_12:53590293-53590665:-|nuORF	REV__ENST00000589179.5_1_12:53590293-53590665:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8018798828125	2	551.803588	1101.59262	0.11289	6.2291E-05	-2.7195	-0.0015006	-2.6066	-0.0014383	551.8022520813262	29.884	0.25954	29.884	29.734	29.993	0					10	5	3	0	0	0	0.50161	1	11106	11106		44.117	4.864	1	94001	+		48558	20507	32162	32297	49160	49160					0.04589071047416837
VVMMNQPK	8	Unmodified	_VVMMNQPK_					0	0	0			REV__ENSG00000129636|ENST00000320640|ITFG1	REV__ENSG00000129636|ENST00000320640|ITFG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	473.7452697753906	2	473.746073	945.477594	-0.28353	-0.00013432	-1.6135	-0.0007644	-1.8971	-0.00089872	473.7453419547277	19.506	0.14133	19.506	19.425	19.566	0					10	4	3	0	0	0	0.67475	1	5047	5047		37.028	2.8559	1	48441	+		48559	14553	32163	32298	49161	49161					0.0026738663626701964
VVMPFHVGL	9	Unmodified	_VVMPFHVGL_					0	0	0			REV__ENST00000429033.1_1_21:32433463-32434067:-|nuORF	REV__ENST00000429033.1_1_21:32433463-32434067:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.77618408203125	2	499.778231	997.541908	-0.049632	-2.4805E-05	-4.2443	-0.0021212	-4.2939	-0.002146	499.77614957250324	24.306	0.3188	24.306	24.155	24.474	0					17	10	2	0	0	0	0.52436	1	7184	7184		29.842	5.6388	1	72405	+		48560	19140	32164	32299	49162	49162					0.04303909784732696
VVMRDPASK	9	Unmodified	_VVMRDPASK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7733154296875	2	501.773677	1001.5328	0.60499	0.00030357	-1.1117	-0.0005578	-0.50668	-0.00025424	501.7730530009468	19.592	0.37048	19.592	19.277	19.647	0					15	8	2	0	0	0	0.25761	1	5905	5905		54.722	3.5297	1	123950			48561	3273	32165	32300	49163	49163					0.0320951642838736
VVMRDPASK	9	Unmodified	_VVMRDPASK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.77337646484375	2	501.773677	1001.5328	0.69472	0.00034859	-1.0883	-0.0005461	-0.39362	-0.00019751	501.77325853242183	19.575	0.63344	19.575	19.043	19.676	0					60	14	5	0	0	0	0.0055674	1	5963	5963		155.58	46.106	1	12397000			48562	3273	32165	32300	49164	49164					0.0320951642838736
VVMRDPASK	9	Unmodified	_VVMRDPASK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.773681640625	2	501.773677	1001.5328	0.043233	2.1693E-05	-0.62004	-0.00031112	-0.57681	-0.00028943	501.77357207341	19.438	0.66003	19.438	18.883	19.543	0					50	13	5	0	0	0	0.0011548	2	6153	5965;6153		181.41	74.4	1	15192000			48563	3273	32165	32300	49165;49166	49166					0.0320951642838736
VVMRDPASK	9	Unmodified	_VVMRDPASK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	334.8514404296875	3	334.851543	1001.5328	0.38303	0.00012826	-0.91482	-0.00030633	-0.53179	-0.00017807	334.85134361238886	19.459	0.6588	19.459	18.934	19.593	0					46	13	5	0	0	0	0.38666	1	6178	6178		50.034	13.587	1	5950700			48564	3273	32165	32300	49167	49167					0.0320951642838736
VVMRDPASK	9	Unmodified	_VVMRDPASK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.77349853515625	2	501.773677	1001.5328	-0.32516	-0.00016316	-0.32912	-0.00016514	-0.65428	-0.0003283	501.7736695988884	19.26	0.52771	19.26	18.858	19.386	0					39	12	4	0	0	0	0.0055674	1	5200	5200		155.58	51.528	1	1594400			48565	3273	32165	32300	49168	49168					0.0320951642838736
VVMRDPASK	9	Unmodified	_VVMRDPASK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.7735595703125	2	501.773677	1001.5328	-0.55276	-0.00027736	0.029213	1.4658E-05	-0.52355	-0.0002627	501.77397026689516	19.451	1.5656	19.451	18.946	20.511	0					85	31	6	0	0	0	0.0055674	3	6023	5831;6023;6099		155.58	36.842	1	14758000			48566	3273	32165	32300	49169;49170;49171	49170					0.0320951642838736
VVMRDPASK	9	Oxidation (M)	_VVM(Oxidation (M))RDPASK_		VVM(1)RDPASK		VVM(58)RDPASK	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.77154541015625	2	509.771134	1017.52771	0.27149	0.0001384	-0.088891	-4.5314E-05	0.1826	9.3082E-05	509.7713024177831	14.617	0.62616	14.617	14.284	14.91	0					33	13	4	0	0	0	0.22837	1	3729	3729		58.23	6.8945	1	475720			48567	3273	32165	32301	49172	49172		140			0.01965212565778529
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	530.2853393554688	2	530.284408	1058.55426	1.1197	0.00059375	-0.65018	-0.00034478	0.46949	0.00024896	530.2841403170676	17.593	0.6875	17.593	17.361	18.048	0					49	20	5	0	0	0	0.15593	1	4168	4168		59.931	8.7381	1	3433000			48568	517;9580	32166	32302	49173	49173					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	353.8586120605469	3	353.858698	1058.55426	0.42829	0.00015156	-0.93608	-0.00033124	-0.50779	-0.00017969	353.85847475285345	17.593	0.3929	17.593	17.386	17.779	0					33	12	5	0	0	0	0.18416	1	4178	4178		63.534	26.026	1	1608800			48569	517;9580	32166	32302	49174	49174					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2847900390625	2	530.284408	1058.55426	2.3866	0.0012656	-1.8727	-0.00099308	0.51388	0.0002725	530.2834943373373	17.902	1.1583	17.902	17.658	18.816	0					66	27	6	0	0	0	0.040209	1	5068	5068		104.06	45.275	1	26936000			48570	517;9580	32166	32302	49175	49175					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2855834960938	2	530.284408	1058.55426	-0.04117	-2.1832E-05	1.1787	0.00062503	1.1375	0.0006032	530.2851426609872	17.627	0.26061	17.627	17.441	17.701	0					17	8	3	0	0	0	0.082776	1	4418	4418		77.318	24.381	1	332200			48571	517;9580	32166	32302	49176	49176					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2848510742188	2	530.284408	1058.55426	0.93671	0.00049672	-0.90602	-0.00048045	0.030691	1.6275E-05	530.2840438502453	17.862	0.52155	17.862	17.6	18.122	0					32	10	5	0	0	0	0.11635	1	5320	5320		78.264	25.965	1	8438400			48572	517;9580	32166	32302	49177	49177					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2846069335938	2	530.284408	1058.55426	1.7301	0.00091745	-1.8337	-0.00097237	-0.10357	-5.4919E-05	530.2836365159826	17.845	0.47101	17.845	17.534	18.005	0					18	9	3	0	0	0	0.024086	1	5359	5359		120.31	50.678	1	3121500			48573	517;9580	32166	32302	49178	49178					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2857055664062	2	530.284408	1058.55426	1.8834	0.00099876	-1.2225	-0.00064827	0.66094	0.00035049	530.2839146086661	17.664	0.33145	17.664	17.48	17.811	0					28	8	5	0	0	0	0.37744	1	4390	4390		52.937	17.318	1	2976600			48574	517;9580	32166	32302	49179	49179					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.8586120605469	3	353.858698	1058.55426	0.43954	0.00015554	-0.78581	-0.00027807	-0.34627	-0.00012253	353.858557007645	17.664	0.28841	17.664	17.48	17.768	0					19	7	4	0	0	0	0.3269	1	4419	4419		47.96	16.325	1	1201000			48575	517;9580	32166	32302	49180	49180					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	530.2850952148438	2	530.284408	1058.55426	1.2021	0.00063747	-0.43549	-0.00023093	0.76664	0.00040654	530.2843473547422	17.647	0.48357	17.647	17.441	17.924	0					32	12	5	0	0	0	0.19891	1	4403	4403		72.879	21.544	1	2207300			48576	517;9580	32166	32302	49181	49181					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	353.8586730957031	3	353.858698	1058.55426	-0.082217	-2.9093E-05	-0.1042	-3.6871E-05	-0.18641	-6.5964E-05	353.85876377162907	17.647	0.32551	17.647	17.469	17.794	0					23	8	4	0	0	0	0.40353	1	4413	4413		41.427	14.734	1	2049000			48577	517;9580	32166	32302	49182	49182					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2850341796875	2	530.284408	1058.55426	0.72857	0.00038635	-1.0011	-0.00053087	-0.27254	-0.00014452	530.2839040440928	17.843	1.2526	17.843	17.531	18.784	0					62	25	6	0	0	0	0.011893	1	5160	5160		120.87	58.761	1	25371000			48578	517;9580	32166	32302	49183	49183					0.027329014571023436
VVMRDPNTK	9	Unmodified	_VVMRDPNTK_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2846069335938	2	530.284408	1058.55426	1.646	0.00087284	-1.5443	-0.00081892	0.10169	5.3925E-05	530.2838365221038	17.826	1.0088	17.826	17.413	18.421	0					51	20	5	0	0	0	0.12278	1	5177	5177		87.696	16.88	1	17499000			48579	517;9580	32166	32302	49184	49184					0.027329014571023436
VVMRDPNTK	9	Oxidation (M)	_VVM(Oxidation (M))RDPNTK_		VVM(1)RDPNTK		VVM(56)RDPNTK	0	0	1		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.190185546875	3	359.190336	1074.54918	-0.063725	-2.2889E-05	-0.39934	-0.00014344	-0.46306	-0.00016633	359.19025806694407	13.658	0.35577	13.658	13.524	13.88	0					13	7	2	0	0	0	0.24334	1	3265	3265		56.434	26.883	1	154670			48580	517;9580	32166	32303	49185	49185		29			0.014885975944707752
VVMRDPNTK	9	Oxidation (M)	_VVM(Oxidation (M))RDPNTK_		VVM(1)RDPNTK		VVM(77)RDPNTK	0	0	1		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2821655273438	2	538.281866	1074.54918	2.0195	0.001087	-1.2787	-0.00068831	0.74075	0.00039873	538.281301954837	13.707	0.59191	13.707	13.511	14.103	0					26	12	3	0	0	0	0.10915	1	3211	3211		77.318	22.595	1	700850			48581	517;9580	32166	32303	49186	49186		29			0.014885975944707752
VVMRDPQTK	9	Oxidation (M)	_VVM(Oxidation (M))RDPQTK_		VVM(1)RDPQTK		VVM(67)RDPQTK	0	0	1		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2911376953125	2	545.289691	1088.56483	1.764	0.00096188	0.28342	0.00015454	2.0474	0.0011164	545.2898065535736	13.82	0.28604	13.82	13.718	14.004	0					19	13	2	0	0	0	0.15163	1	2746	2746		67.494	21.037	1	123990			48582	6211	32167	32304	49187	49187		257			0.024088841115144533
VVMRDPQTK	9	Oxidation (M)	_VVM(Oxidation (M))RDPQTK_		VVM(1)RDPQTK		VVM(73)RDPQTK	0	0	1		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.2902221679688	2	545.289691	1088.56483	1.9287	0.0010517	-1.0452	-0.00056992	0.8835	0.00048176	545.2890983814414	14.124	0.97319	14.124	13.873	14.846	0					37	20	2	0	0	0	0.12834	1	3607	3607		72.879	26.907	1	1170000			48583	6211	32167	32304	49188	49188		257			0.024088841115144533
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2933959960938	2	537.292233	1072.56991	1.3977	0.00075098	-0.82084	-0.00044103	0.57687	0.00030995	537.2919153326361	18.074	0.58238	18.074	17.801	18.383	0					63	19	5	0	0	0	0.11635	1	4364	4364		78.264	24.912	1	4553600			48584	6211	32167	32305	49189	49189					0.036531879741460216
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	358.5304260253906	3	358.530581	1072.56991	0.44522	0.00015963	-0.87454	-0.00031355	-0.42932	-0.00015392	358.53034675965756	18.073	0.37884	18.073	17.841	18.22	0					33	11	4	0	0	0	0.48623	1	4418	4418		33.922	0	1	875240			48585	6211	32167	32305	49190	49190					0.036531879741460216
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.5304870605469	3	358.530581	1072.56991	0.72327	0.00025932	-1.2503	-0.00044827	-0.52702	-0.00018895	358.53028160139473	18.345	0.73366	18.345	18.082	18.816	0					50	17	5	0	0	0	0.36135	1	5337	5337		45.022	1.3714	1	10980000			48586	6211	32167	32305	49191	49191					0.036531879741460216
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2929077148438	2	537.292233	1072.56991	-0.35681	-0.00019171	0.91997	0.00049429	0.56316	0.00030258	537.2927806354672	18.061	0.59886	18.061	17.792	18.391	0					58	19	5	0	0	0	0.099758	1	4600	4600		72.879	7.4139	1	3320200			48587	6211	32167	32305	49192	49192					0.036531879741460216
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	358.5306701660156	3	358.530581	1072.56991	0.41207	0.00014774	-0.90213	-0.00032344	-0.49006	-0.0001757	358.53035721990545	18.167	0.52902	18.167	17.834	18.363	0					38	12	5	0	0	0	0.41958	1	4630	4630		40.058	1.3046	1	2062300			48588	6211	32167	32305	49193	49193					0.036531879741460216
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2930297851562	2	537.292233	1072.56991	1.0306	0.00055374	-0.4519	-0.0002428	0.57872	0.00031094	537.2920699211445	18.156	0.76822	18.156	17.823	18.591	0					53	19	5	0	0	0	0.082776	1	4602	4602		67.494	0	1	4272900			48589	6211	32167	32305	49194	49194					0.036531879741460216
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2926025390625	2	537.292233	1072.56991	0.69742	0.00037472	-0.51559	-0.00027702	0.18183	9.7697E-05	537.2920175139091	18.329	1.1317	18.329	17.931	19.063	0					69	23	5	0	0	0	0.013298	1	5378	5378		106.68	57.242	1	26363000			48590	6211	32167	32305	49195	49195					0.036531879741460216
VVMRDPQTK	9	Unmodified	_VVMRDPQTK_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.5306701660156	3	358.530581	1072.56991	-0.062541	-2.2423E-05	-0.35142	-0.000126	-0.41396	-0.00014842	358.53066710164296	18.329	1.0313	18.329	17.931	18.963	0					62	21	5	0	0	0	0.44949	1	5427	5427		37.508	9.4267	1	27445000			48591	6211	32167	32305	49196	49196					0.036531879741460216
VVMTPVPLFSK	11	Unmodified	_VVMTPVPLFSK_					0	0	0		GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	609.3511352539062	2	609.35176	1216.68897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.548	1	46.548	46.048	47.048	0								0	0	0	0.30435	1	17184	17184		51.528	22.358	1				48592	6741	32168	32306	49197	49197					0.08928961878996233
VVMVCILLY	9	Unmodified	_VVMVCILLY_					0	0	0		ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.5329284667969	3	351.534275	1051.581	-0.047232	-1.6604E-05	-3.7599	-0.0013217	-3.8071	-0.0013383	351.5329200898905	15.272	0.11815	15.272	15.212	15.33	0					4	2	2	0	0	0	0.53083	1	4001	4001		29.15	5.6269	1	277890			48593	6232	32169	32307	49198	49198					0.05726874024094286
VVMVNQGLTK	10	Oxidation (M)	_VVM(Oxidation (M))VNQGLTK_		VVM(1)VNQGLTK		VVM(67)VNQGLTK	0	0	1		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.8084106445312	2	552.807716	1103.60088	1.4429	0.00079763	-1.0227	-0.00056538	0.42014	0.00023226	552.8075583380171	24.925	0.10359	24.925	24.828	24.931	0					5	3	2	0	0	0	0.30252	1	7425	7425		66.962	25.535	1	43282			48594	3889	32170	32308	49199	49199		160			0.05322341288388088
VVMVNQGLTK	10	Oxidation (M)	_VVM(Oxidation (M))VNQGLTK_		VVM(1)VNQGLTK		VVM(76)VNQGLTK	0	0	1		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.8081665039062	2	552.807716	1103.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.23	1	25.23	24.73	25.73	0								0	0	0	0.11831	1	8594	8594		76.17	29.713	1				48595	3889	32170	32308	49200	49200		160			0.05322341288388088
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.8108520507812	2	544.810259	1087.60597	1.7784	0.00096889	-1.5067	-0.00082087	0.2717	0.00014802	544.809702246522	28.37	0.31019	28.37	28.273	28.584	0					27	11	4	0	0	0	0.0083517	1	8838	8838		154.12	63.749	1	1260400			48596	3889	32170	32309	49201	49201					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8106689453125	2	544.810259	1087.60597	1.8704	0.001019	-2.0874	-0.0011373	-0.21699	-0.00011822	544.8096022912683	28.646	0.45314	28.646	28.526	28.979	0					40	11	5	0	0	0	0.0012279	2	10136	10136;10231		185.72	95.349	1	5511200			48597	3889	32170	32309	49202;49203	49202					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.8115844726562	2	544.810259	1087.60597	0.49755	0.00027107	1.3635	0.00074287	1.8611	0.0010139	544.8112090781975	28.39	0.26267	28.39	28.319	28.581	0					24	9	4	0	0	0	0.0074017	1	9135	9135		159.28	99.158	1	875670			48598	3889	32170	32309	49204	49204					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.8111572265625	2	544.810259	1087.60597	1.9423	0.0010582	-0.7212	-0.00039292	1.2211	0.00066529	544.8100765878423	28.624	0.36262	28.624	28.515	28.878	0					24	7	5	0	0	0	0.0043426	1	10517	10517		172.25	92.536	1	4487900			48599	3889	32170	32309	49205	49205					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.811279296875	2	544.810259	1087.60597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.441	1	28.441	27.941	28.941	0								0	0	0	0.010481	1	9441	9441		126.24	71.466	1				48600	3889	32170	32309	49206	49206					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.810791015625	2	544.810259	1087.60597	1.103	0.00060094	-0.25369	-0.00013821	0.84933	0.00046273	544.8102537461606	28.445	0.28713	28.445	28.325	28.613	0					18	7	4	0	0	0	0.0043426	1	9434	9434		159.28	106.34	1	992710			48601	3889	32170	32309	49207	49207					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.81103515625	2	544.810259	1087.60597	-1.4965	-0.00081533	2.4369	0.0013277	0.94036	0.00051232	544.8117748689035	28.452	0.16656	28.452	28.353	28.519	0					12	4	4	0	0	0	0.011683	1	9445	9445		126.24	45.788	1	152280			48602	3889	32170	32309	49208	49208					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.8106689453125	2	544.810259	1087.60597	0.57956	0.00031575	-1.6171	-0.00088101	-1.0375	-0.00056526	544.8102777757848	28.566	0.46448	28.566	28.46	28.925	0					33	9	5	0	0	0	0.0012279	2	10374	10374;10426		172.25	92.536	1	2982200			48603	3889	32170	32309	49209;49210	49209					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.8107299804688	2	544.810259	1087.60597	1.9631	0.0010695	-2.1306	-0.0011607	-0.16744	-9.1225E-05	544.8095596058399	28.599	0.71524	28.599	28.443	29.159	0					40	14	5	0	0	0	0.0043426	2	10366	10366;10467		172.25	92.536	1	6752800			48604	3889	32170	32309	49211;49212	49211					0.06566645150996919
VVMVNQGLTK	10	Unmodified	_VVMVNQGLTK_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.8109741210938	2	544.810259	1087.60597	3.7107	0.0020216	-3.0423	-0.0016575	0.66834	0.00036412	544.808847422528	28.583	0.26379	28.583	28.478	28.741	0					16	5	5	0	0	0	0.0094828	1	10386	10386		146.79	76.387	1	1356100			48605	3889	32170	32309	49213	49213					0.06566645150996919
VVMVQICGR	9	Unmodified	_VVMVQICGR_					0	0	0		ENST00000472054.2_1_6:142738255-142764649:+|nuORF;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ADGRG6|p.S1069Rfs*9|1|0.04|ENSG00000112414|chr6:142419991-142419992|-/GTCACATAAAA|frameshift_variant;ADGRG6|p.F1083Lfs*9|1|0.32|ENSG00000112414|chr6:142420031-142420031|T/-|frameshift_variant	ENST00000472054.2_1_6:142738255-142764649:+|nuORF	ENST00000472054.2_1_6:142738255-142764649:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.77349853515625	2	502.772622	1003.53069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.171	1	32.171	31.671	32.671	0								0	0	0	0.15865	1	10720	10720		57.811	13.694	1				48606	2742	32171	32310	49214	49214					0.0290676441894675
VVNAAALV	8	Unmodified	_VVNAAALV_					0	0	0			REV__PSMB9|p.N105K|1|0.37|ENSG00000240065|chr6:32858059-32858059|T/G|missense_variant	REV__PSMB9|p.N105K|1|0.37|ENSG00000240065|chr6:32858059-32858059|T/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	378.7362060546875	2	378.734346	755.454139	0.67404	0.00025528	3.3066	0.0012523	3.9806	0.0015076	378.73559875543606	38.847	0.39532	38.847	38.729	39.124	0					10	8	2	0	0	0	0.78146	1	15313	15313		23.037	1.3344	1	120110	+		48607	17678	32172	32311	49215	49215					0.06663032185599604
VVNDAGRPK	9	Unmodified	_VVNDAGRPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	478.2693176269531	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.813	1	13.813	13.313	14.313	0								0	0	0	0.080575	1	2754	2754		77.318	11.514	1				48608	2601	32173	32312	49216	49216					0.045597055032772005
VVNDAGRPK	9	Unmodified	_VVNDAGRPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	478.269287109375	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.115	1	14.115	13.615	14.615	0								0	0	0	0.040385	1	3368	3368		90.601	28.493	1				48609	2601	32173	32312	49217	49217					0.045597055032772005
VVNDAGRPK	9	Unmodified	_VVNDAGRPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2697448730469	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.866	1	13.866	13.366	14.366	0								0	0	0	0.23445	1	2911	2911		45.972	5.1941	1				48610	2601	32173	32312	49218	49218					0.045597055032772005
VVNDAGRPK	9	Unmodified	_VVNDAGRPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.2694396972656	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.083	1	14.083	13.583	14.583	0								0	0	0	0.040385	1	3576	3576		90.601	37.249	1				48611	2601	32173	32312	49219	49219					0.045597055032772005
VVNDAGRPK	9	Unmodified	_VVNDAGRPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.269287109375	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.882	1	13.882	13.382	14.382	0								0	0	0	0.0537	1	2848	2848		85.161	29.657	1				48612	2601	32173	32312	49220	49220					0.045597055032772005
VVNDAGRPK	9	Unmodified	_VVNDAGRPK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	478.2691650390625	2	478.269616	954.524678	2.247	0.0010747	-2.7085	-0.0012954	-0.46144	-0.00022069	478.26810082718293	14.082	0.31252	14.082	13.978	14.29	0					10	6	2	0	0	0	0.098791	1	3431	3431		79.713	24.208	1	1265700			48613	2601	32173	32312	49221	49221					0.045597055032772005
VVNDHDNDAN	10	Unmodified	_VVNDHDNDAN_					0	0	0		ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant;ENSG00000168813|ENST00000355898|ZNF507;ZNF507|p.H394Mfs*4|1|0.47|ENSG00000168813|chr19:32354001-32354001|A/-|frameshift_variant;nc|ENSG00000168813|Q8TCN5-2|ZNF507	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.734130859375	2	556.733791	1111.45303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.224	1	19.224	18.724	19.724	0								0	0	0	0.40797	1	5178	5178		28.081	1.3886	1				48614	6126	32174	32313	49222	49222					-0.09823878711904399
VVNDHDNDAN	10	Unmodified	_VVNDHDNDAN_					0	0	0		ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant;ENSG00000168813|ENST00000355898|ZNF507;ZNF507|p.H394Mfs*4|1|0.47|ENSG00000168813|chr19:32354001-32354001|A/-|frameshift_variant;nc|ENSG00000168813|Q8TCN5-2|ZNF507	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	556.7342529296875	2	556.733791	1111.45303	-0.96371	-0.00053653	2.1804	0.0012139	1.2167	0.00067735	556.7348158531792	19.23	0.44453	19.23	18.958	19.403	0					14	10	2	0	0	0	0.58189	1	5171	5171		36.447	13.404	1	112900			48615	6126	32174	32313	49223	49223					-0.09823878711904399
VVNDLNQILAE	11	Unmodified	_VVNDLNQILAE_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	409.8909912109375	3	409.890832	1226.65067	-0.49735	-0.00020386	0.55454	0.0002273	0.057193	2.3443E-05	410.2251264144636	14.819	0.21669	14.819	14.66	14.877	0					10	4	3	0	0	0	0.66915	1	3762	3762		30.569	0	1	370090	+		48616	14120	32175	32314	49224	49224					0.04640747498069686
VVNGRVLEL	9	Unmodified	_VVNGRVLEL_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant;ENST00000531675.1_1_6:139272213-139308858:-|nuORF	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.8029479980469	2	499.803291	997.59203	0.66583	0.00033278	-1.5515	-0.00077544	-0.88565	-0.00044265	499.8025916467978	37.464	0.17766	37.464	37.358	37.536	0					9	5	3	0	0	0	0.37197	1	14199	14199		44.117	5.3107	1	188730			48617	4005	32176	32315	49225	49225					0.09313735714226823
VVNGRVLEL	9	Unmodified	_VVNGRVLEL_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant;ENST00000531675.1_1_6:139272213-139308858:-|nuORF	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.8028259277344	2	499.803291	997.59203	0.8815	0.00044058	-1.1031	-0.00055132	-0.22156	-0.00011074	499.8027216681089	37.39	0.20668	37.39	37.328	37.535	0					14	6	3	0	0	0	0.16002	1	14628	14628		66.429	7.6473	1	293660			48618	4005	32176	32315	49226	49226					0.09313735714226823
VVNGRVLEL	9	Unmodified	_VVNGRVLEL_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant;ENST00000531675.1_1_6:139272213-139308858:-|nuORF	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.8031311035156	2	499.803291	997.59203	1.0749	0.00053726	-1.1542	-0.00057688	-0.07926	-3.9614E-05	499.8028148515103	37.357	0.35808	37.357	37.252	37.61	0					10	7	2	0	0	0	0.048471	1	14613	14613		95.815	34.843	1	305760			48619	4005	32176	32315	49227	49227					0.09313735714226823
VVNHFQKA	8	Unmodified	_VVNHFQKA_					0	0	0		TNFRSF19|p.R100H|1|0.32|ENSG00000127863|chr13:23615985-23615985|G/A|missense_variant	TNFRSF19|p.R100H|1|0.32|ENSG00000127863|chr13:23615985-23615985|G/A|missense_variant	TNFRSF19|p.R100H|1|0.32|ENSG00000127863|chr13:23615985-23615985|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.7624816894531	2	471.761426	941.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.873	1	18.873	18.373	19.373	0								0	0	0	1.7419	1	5010	5010		13.775	0.81615	1				48620	22552	32177	32316	49228	49228					0.035206243371817436
VVNKKKKK	8	Unmodified	_VVNKKKKK_					0	0	0			REV__ENST00000503238.5_2_4:48500063-48500156:-|nuORF	REV__ENST00000503238.5_2_4:48500063-48500156:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	324.56109619140625	3	324.562321	970.665135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.713	1	26.713	26.213	27.213	0								0	0	0	1.7419	1	9594	9594		18.324	3.4595	1		+		48621	19817	32178	32317	49229	49229					0.1786290922751732
VVNKTIFAK	9	Unmodified	_VVNKTIFAK_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12;ENST00000490962.1_1_3:72925982-72926321:-|nuORF	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.31610107421875	2	510.316035	1018.61752	1.1696	0.00059688	-0.22969	-0.00011721	0.93993	0.00047966	510.3156284096387	23.332	0.10891	23.332	23.277	23.386	0					4	2	2	0	0	0	0.10915	1	7721	7721		77.318	31.366	1	59657			48622	7434	32179	32318	49230	49230					0.10895210236674302
VVNKTIFAK	9	Unmodified	_VVNKTIFAK_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12;ENST00000490962.1_1_3:72925982-72926321:-|nuORF	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.3158264160156	2	510.316035	1018.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.298	1	23.298	22.798	23.798	0								0	0	0	0.045272	1	8008	8008		88.177	29.395	1				48623	7434	32179	32318	49231	49231					0.10895210236674302
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.8355102539062	2	527.834591	1053.65463	1.2539	0.00066187	0.88499	0.00046713	2.1389	0.001129	527.8348677266818	21.476	0.23639	21.476	21.317	21.553	0					18	9	3	0	0	0	0.25899	1	5905	5905		72.243	29.379	1	114620			48624	4948	32180	32319	49232	49232					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.8350219726562	2	527.834591	1053.65463	2.1538	0.0011369	-1.3348	-0.00070455	0.81904	0.00043232	527.8338926258971	21.789	0.36732	21.789	21.564	21.932	0					18	8	3	0	0	0	0.13663	1	6967	6967		89.029	30.799	1	969940			48625	4948	32180	32319	49233	49233					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.8358154296875	2	527.834591	1053.65463	5.2413	0.0027665	-4.1269	-0.0021783	1.1144	0.00058824	527.8325887500882	21.494	0.20163	21.494	21.361	21.562	0					11	6	2	0	0	0	0.065778	1	6204	6204		104.01	44.083	1	82195			48626	4948	32180	32319	49234	49234					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.225341796875	3	352.225486	1053.65463	-0.84324	-0.00029701	0.9172	0.00032306	0.073965	2.6052E-05	352.225788903501	21.503	0.26003	21.503	21.35	21.61	0					20	8	3	0	0	0	0.62235	1	6141	6141		51.528	27.325	1	167430			48627	4948	32180	32319	49235	49235					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.8350219726562	2	527.834591	1053.65463	0.9279	0.00048978	-0.12257	-6.4699E-05	0.80533	0.00042508	527.8344728394167	21.682	0.36687	21.682	21.475	21.842	0					20	7	4	0	0	0	0.39647	1	7214	7214		56.632	19.473	1	847000			48628	4948	32180	32319	49236	49236					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	352.22540283203125	3	352.225486	1053.65463	1.4476	0.00050986	-1.2206	-0.00042993	0.22695	7.9939E-05	352.2249916110881	21.668	0.36763	21.668	21.458	21.825	0					23	7	4	0	0	0	0.57211	1	7210	7210		57.149	15.722	1	1957900			48629	4948	32180	32319	49237	49237					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.8349609375	2	527.834591	1053.65463	1.7632	0.00093065	-0.42397	-0.00022378	1.3392	0.00070687	527.8341247015375	21.576	0.25161	21.576	21.406	21.657	0					14	6	3	0	0	0	0.10583	1	6277	6277		94.409	37.975	1	125300			48630	4948	32180	32319	49238	49238					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.2253723144531	3	352.225486	1053.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.556	1	21.556	21.056	22.056	0								0	0	0	0.33707	1	6270	6270		57.149	23.633	1				48631	4948	32180	32319	49239	49239					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.22564697265625	3	352.225486	1053.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.589	1	21.589	21.089	22.089	0								0	0	0	0.4044	1	6286	6286		48.602	19.452	1				48632	4948	32180	32319	49240	49240					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.834716796875	2	527.834591	1053.65463	0.68109	0.0003595	0.21703	0.00011456	0.89812	0.00047406	527.8346662423963	21.696	0.41819	21.696	21.437	21.856	0					23	8	4	0	0	0	0.12383	1	7066	7066		91.265	37.668	1	1790800			48633	4948	32180	32319	49241	49241					0.12994881782424272
VVNPKYEGK	9	Unmodified	_VVNPKYEGK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	345.19384765625	3	345.194075	1032.5604	0.19629	6.7759E-05	-0.60798	-0.00020987	-0.41169	-0.00014211	345.19387334081557	17.062	0.15701	17.062	16.952	17.109	0					13	5	3	0	0	0	0.16524	1	3981	3981		82.241	18.707	1	100950			48634	4919	32181	32320	49242	49242					0.04541742960282136
VVNPKYEGK	9	Unmodified	_VVNPKYEGK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.2877807617188	2	517.287474	1032.5604	0.37007	0.00019143	0.35467	0.00018347	0.72474	0.0003749	517.287883940902	17.052	0.09466	17.052	16.978	17.073	0					5	3	2	0	0	0	0.17854	1	3992	3992		64.207	11.271	1	54850			48635	4919	32181	32320	49243	49243					0.04541742960282136
VVNPKYEGK	9	Unmodified	_VVNPKYEGK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	345.1940002441406	3	345.194075	1032.5604	0.50396	0.00017396	-0.53428	-0.00018443	-0.030318	-1.0465E-05	345.19384238766065	17.352	0.28776	17.352	17.172	17.46	0					14	7	3	0	0	0	0.42902	1	4883	4883		63.534	3.6031	1	461370			48636	4919	32181	32320	49244	49244					0.04541742960282136
VVNPKYEGK	9	Unmodified	_VVNPKYEGK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	517.2876586914062	2	517.287474	1032.5604	0.030932	1.6001E-05	-0.17086	-8.8385E-05	-0.13993	-7.2384E-05	517.2872474864283	17.112	0.12229	17.112	16.993	17.115	0					6	4	2	0	0	0	0.19605	1	4219	4219		62.107	0	1	77237			48637	4919	32181	32320	49245	49245					0.04541742960282136
VVNPKYEGK	9	Unmodified	_VVNPKYEGK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.2872924804688	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.114	1	17.114	16.614	17.614	0								0	0	0	0.16453	1	4200	4200		56.434	8.4743	1				48638	4919	32181	32320	49246	49246					0.04541742960282136
VVNPKYEGK	9	Unmodified	_VVNPKYEGK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.287841796875	2	517.287474	1032.5604	3.3184	0.0017166	-2.8665	-0.0014828	0.45195	0.00023379	517.2858858730946	17.282	0.40812	17.282	17.056	17.464	0					13	8	3	0	0	0	0.032383	1	4961	4961		106.68	34.806	1	663330			48639	4919	32181	32320	49247	49247					0.04541742960282136
VVNSPHRQYK	10	Unmodified	_VVNSPHRQYK_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.8910217285156	3	409.891278	1226.652	1	0.00040991	-1.8035	-0.00073925	-0.80349	-0.00032934	409.8907245541828	14.866	0.39913	14.866	14.734	15.133	0					16	9	3	0	0	0	0.59277	1	3713	3713		35.152	3.5178	1	890680			48640	5743	32182	32321	49248	49248					0.0477442637745753
VVNSPHRQYK	10	Unmodified	_VVNSPHRQYK_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	614.3333740234375	2	614.333279	1226.652	-0.86169	-0.00052937	0.9446	0.0005803	0.08291	5.0934E-05	614.3337992980314	14.859	0.1768	14.859	14.764	14.941	0					10	4	3	0	0	0	0.078327	1	3720	3720		78.264	23.487	1	707040			48641	5743	32182	32321	49249	49249					0.0477442637745753
VVNSPHRQYK	10	Unmodified	_VVNSPHRQYK_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	614.3330688476562	2	614.333279	1226.652	0.55604	0.0003416	-1.1263	-0.00069192	-0.57025	-0.00035032	614.3327300526478	14.621	0.097481	14.621	14.544	14.642	0					7	4	2	0	0	0	0.46989	1	3201	3201		29.17	10.067	1	95202			48642	5743	32182	32321	49250	49250					0.0477442637745753
VVNSPHRQYK	10	Unmodified	_VVNSPHRQYK_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.3333740234375	2	614.333279	1226.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.893	1	14.893	14.393	15.393	0								0	0	0	0.21987	1	3962	3962		58.23	22.612	1				48643	5743	32182	32321	49251	49251					0.0477442637745753
VVNSQTLLH	9	Unmodified	_VVNSQTLLH_					0	0	0		nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2;ARID2|p.P851Hfs*4|1|0.36|ENSG00000189079|chr12:45850671-45850671|C/-|frameshift_variant	nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7853088378906	2	505.785099	1009.55564	0.82136	0.00041543	-1.125	-0.00056902	-0.30367	-0.00015359	505.7845348128279	29.136	0.21071	29.136	29.046	29.256	0					11	5	3	0	0	0	0.13267	1	10385	10385		71.877	14.066	1	253850			48644	221	32183	32322	49252	49252					0.051248588175326404
VVNSQTLLH	9	Unmodified	_VVNSQTLLH_					0	0	0		nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2;ARID2|p.P851Hfs*4|1|0.36|ENSG00000189079|chr12:45850671-45850671|C/-|frameshift_variant	nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.78460693359375	2	505.785099	1009.55564	-0.28439	-0.00014384	-0.17114	-8.6558E-05	-0.45552	-0.0002304	505.78502478016475	29.068	0.21513	29.068	28.959	29.174	0					7	4	2	0	0	0	0.30841	1	10620	10620		49.536	8.9634	1	307250			48645	221	32183	32322	49253	49253					0.051248588175326404
VVNVSPYLK	9	Unmodified	_VVNVSPYLK_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	509.8022155761719	2	509.800217	1017.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.438	1	34.438	33.938	34.938	0								0	0	0	0.23111	1	11256	11256		47.657	9.8458	1				48646	6032	32184	32323	49254	49254					0.07779217482720924
VVNVSPYLK	9	Unmodified	_VVNVSPYLK_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.80035400390625	2	509.800217	1017.58588	0.95012	0.00048437	-0.98694	-0.00050314	-0.036816	-1.8769E-05	509.79967036327264	34.707	0.31471	34.707	34.612	34.927	0					15	8	3	0	0	0	0.046074	1	12959	12959		90.601	23.107	1	399450			48647	6032	32184	32323	49255	49255					0.07779217482720924
VVNVSPYLK	9	Unmodified	_VVNVSPYLK_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.79986572265625	2	509.800217	1017.58588	0.27511	0.00014025	-0.99181	-0.00050563	-0.7167	-0.00036538	509.79965361893346	34.738	0.1591	34.738	34.624	34.783	0					9	4	3	0	0	0	0.27123	1	13408	13408		45.972	21.453	1	92294			48648	6032	32184	32323	49256	49256					0.07779217482720924
VVNVSPYLK	9	Unmodified	_VVNVSPYLK_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.8003845214844	2	509.800217	1017.58588	0.68349	0.00034844	0.30718	0.0001566	0.99067	0.00050504	510.3012101076731	34.493	0.17431	34.493	34.42	34.595	0					7	5	2	0	0	0	0.37744	1	12211	12211		44.377	5.1244	1	49698			48649	6032	32184	32323	49257	49257					0.07779217482720924
VVNVSPYLK	9	Unmodified	_VVNVSPYLK_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.8003845214844	2	509.800217	1017.58588	-0.030062	-1.5326E-05	-0.12861	-6.5566E-05	-0.15867	-8.0892E-05	509.8003072544981	34.692	0.30869	34.692	34.538	34.847	0					9	6	2	0	0	0	0.090954	1	13308	13308		75.043	22.107	1	355090			48650	6032	32184	32323	49258	49258					0.07779217482720924
VVNYEDLAAR	10	Unmodified	_VVNYEDLAAR_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	575.2978515625	2	575.29857	1148.58259	0.052325	3.0102E-05	-0.46221	-0.00026591	-0.40989	-0.00023581	575.2982262233962	30.698	0.31625	30.698	30.561	30.877	0					39	11	5	0	0	0	0.55603	1	10072	10072		39.253	6.4404	1	1195700			48651	1509	32185	32324	49259	49259					0.014239226380368564
VVPEPGTSL	9	Unmodified	_VVPEPGTSL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.2484436035156	2	449.74765	897.480748	-0.30429	-0.00013685	-0.85251	-0.00038341	-1.1568	-0.00052027	449.7472895406597	36.084	0.1283	36.084	36.035	36.163	0					6	5	2	0	0	0	0.25109	1	11829	11829		55.504	4.1688	1	75697			48652	1881	32186	32325	49260	49260					0.027906762863040058
VVPEPGTSL	9	Unmodified	_VVPEPGTSL_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	449.74664306640625	2	449.74765	897.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.396	1	36.396	35.896	36.896	0								0	0	0	0.073265	1	13724	13724		79.451	18.479	1				48653	1881	32186	32325	49261	49261					0.027906762863040058
VVPGGIISLC	10	Unmodified	_VVPGGIISLC_					0	0	0		ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	479.2767028808594	2	479.275521	956.536489	0.6968	0.00033396	2.2298	0.0010687	2.9266	0.0014027	479.2766620775795	55.338	0.17107	55.338	55.228	55.399	0					14	10	2	0	0	0	0.67199	1	16141	16141		25.45	2.4077	1	64912			48654	3359	32187	32326	49262	49262					0.0564818620226788
VVPGSSGV	8	Unmodified	_VVPGSSGV_					0	0	0		ENST00000436129.2_1_20:60551226-60583162:-|nuORF;ENST00000608458.1_1_20:60551226-60554091:-|nuORF;ENSG00000130699|ENST00000252996|TAF4	ENST00000436129.2_1_20:60551226-60583162:-|nuORF	ENST00000436129.2_1_20:60551226-60583162:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	351.1959228515625	2	351.195054	700.375555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.658	1	27.658	27.158	28.158	0								0	0	0	1.7419	1	9688	9688		29.842	1.5873	1				48655	9529	32188	32327	49263	49263					0.013381798805312428
VVPHNFMY	8	Unmodified	_VVPHNFMY_					0	0	0		ENSG00000198178|ENST00000360345|CLEC4C	ENSG00000198178|ENST00000360345|CLEC4C	ENSG00000198178|ENST00000360345|CLEC4C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.746826171875	2	503.744388	1005.47422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.682	1	45.682	45.182	46.182	0								0	0	0	1.7419	1	16976	16976		21.702	1.2205	1				48656	7538	32189	32328	49264	49264					-0.028295401460809444
VVPPPQRPD	9	Unmodified	_VVPPPQRPD_					0	0	0		ENST00000526559.5_1_11:64693020-64693122:+|nuORF	ENST00000526559.5_1_11:64693020-64693122:+|nuORF	ENST00000526559.5_1_11:64693020-64693122:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7822265625	2	502.779816	1003.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.891	1	13.891	13.391	14.391	0								0	0	0	0.23459	1	2852	2852		45.952	5.1738	1				48657	10378	32190	32329	49265	49265					0.04344876163088429
VVPVSGSCCGS	11	Unmodified	_VVPVSGSCCGS_					0	0	0		ENST00000561708.1_1_16:70433404-70456862:-|nuORF	ENST00000561708.1_1_16:70433404-70456862:-|nuORF	ENST00000561708.1_1_16:70433404-70456862:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.71795654296875	2	497.720252	993.425952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.573	1	34.573	34.073	35.073	0								0	0	0	0.26434	1	13338	13338		56.721	20.274	1				48658	10712	32191	32330	49266	49266					-0.07102401848271711
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	593.8560180664062	2	593.855721	1185.69689	1.5344	0.00091118	-0.45677	-0.00027126	1.0776	0.00063993	593.8551610696841	37.271	0.11697	37.271	37.25	37.367	0					9	6	2	0	0	0	0.27635	1	12213	12213		65.278	10.555	1	67778			48659	1615	32192	32331	49267	49267					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	593.85546875	2	593.855721	1185.69689	0.1296	7.6965E-05	0.0039172	2.3263E-06	0.13352	7.9291E-05	593.8557556496254	37.29	0.18574	37.29	37.212	37.398	0					25	10	3	0	0	0	0.060509	1	12206	12206		100.09	55.064	1	261440			48660	1615	32192	32331	49268	49268					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.8560180664062	2	593.855721	1185.69689	0.82951	0.00049261	-0.73355	-0.00043562	0.095958	5.6985E-05	593.855165321625	37.598	0.22177	37.598	37.494	37.716	0					17	6	4	0	0	0	0.060509	1	14246	14246		100.09	60.028	1	536220			48661	1615	32192	32331	49269	49269					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.8557739257812	2	593.855721	1185.69689	0.28323	0.0001682	-0.079113	-4.6982E-05	0.20411	0.00012121	593.8556005755678	37.595	0.36676	37.595	37.451	37.818	0					34	11	4	0	0	0	7.0606E-05	1	14234	14234		149.94	75.779	1	2090700			48662	1615	32192	32331	49270	49270					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.8560180664062	2	593.855721	1185.69689	0.0066305	3.9376E-06	0.58474	0.00034725	0.59137	0.00035119	593.8560594415726	37.557	0.14262	37.557	37.478	37.62	0					8	4	2	0	0	0	0.37395	1	14688	14688		54.343	6.3838	1	150080			48663	1615	32192	32331	49271	49271					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	593.8563842773438	2	593.855721	1185.69689	0.50401	0.00029931	-0.076537	-4.5452E-05	0.42748	0.00025386	593.8556450042073	37.344	0.2505	37.344	37.248	37.499	0					34	12	4	0	0	0	0.052273	1	13353	13353		104.07	40.536	1	413600			48664	1615	32192	32331	49272	49272					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.8557739257812	2	593.855721	1185.69689	1.5589	0.00092578	-0.9351	-0.00055531	0.62384	0.00037047	593.8551510960779	37.51	0.45492	37.51	37.349	37.804	0					31	9	5	0	0	0	2.0972E-06	1	14657	14657		189.17	95.568	1	4304000			48665	1615	32192	32331	49273	49273					0.11146812400124873
VVQDWKFV	8	Unmodified	_VVQDWKFV_					0	0	0		ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.7812805175781	2	510.779285	1019.54402	1.2157	0.00062097	2.5054	0.0012797	3.7211	0.0019007	510.7807206660579	33.939	0.13371	33.939	33.854	33.987	0					5	3	2	0	0	0	0.67394	1	12608	12608		19.36	4.6959	1	33256			48666	4779	32193	32332	49274	49274					0.03502661794186679
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	566.3151245117188	2	565.813856	1129.61316	1.4502	0.00082053	-0.65114	-0.00036843	0.79903	0.0004521	565.8135671680926	29.875	0.31719	29.875	29.756	30.073	0					30	12	3	0	0	0	0.36647	1	9447	9447		59.931	12.273	1	513060			48667	6150	32194	32333	49275	49275					0.05353701023113899
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.81396484375	2	565.813856	1129.61316	0.28792	0.00016291	-0.7037	-0.00039816	-0.41578	-0.00023525	565.8131304528887	30.132	0.20634	30.132	30.038	30.245	0					11	5	3	0	0	0	0.46989	1	10838	10838		48.602	12.155	1	220540			48668	6150	32194	32333	49276	49276					0.05353701023113899
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.3173828125	2	565.813856	1129.61316	0.1352	7.6497E-05	0.64691	0.00036603	0.78211	0.00044253	565.8142113283168	29.926	0.34566	29.926	29.777	30.123	0					37	13	4	0	0	0	0.38179	1	9752	9752		58.246	20.435	1	846150			48669	6150	32194	32333	49277	49277					0.05353701023113899
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.8140258789062	2	565.813856	1129.61316	1.9159	0.001084	-1.1947	-0.00067598	0.72115	0.00040804	565.8131185730834	30.141	0.47032	30.141	29.993	30.464	0					36	10	5	0	0	0	0.049666	1	11224	11224		109.44	45.232	1	4400700			48670	6150	32194	32333	49278	49278					0.05353701023113899
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.814208984375	2	565.813856	1129.61316	0.79394	0.00044922	-0.45887	-0.00025964	0.33507	0.00018958	565.8136011964014	29.932	0.31438	29.932	29.803	30.118	0					24	8	4	0	0	0	0.36647	1	10097	10097		59.931	19.153	1	746620			48671	6150	32194	32333	49279	49279					0.05353701023113899
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.8142700195312	2	565.813856	1129.61316	1.7051	0.00096476	-0.89117	-0.00050424	0.8139	0.00046052	565.8133857456619	30.09	0.41239	30.09	29.93	30.342	0					30	8	5	0	0	0	0.010125	1	11083	11083		142.36	68.106	1	4445600			48672	6150	32194	32333	49280	49280					0.05353701023113899
VVQERESLLVK	11	Unmodified	_VVQERESLLVK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	433.92535400390625	3	433.925877	1298.7558	3.2292	0.0014012	-2.9135	-0.0012642	0.31567	0.00013698	433.924359157368	26.234	0.15244	26.234	26.185	26.337	0					5	4	2	0	0	0	0.50799	1	8225	8225		43.651	15.074	1	43851			48673	1919	32195	32334	49281	49281					0.1183728869443712
VVQERESLLVK	11	Unmodified	_VVQERESLLVK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	433.92572021484375	3	433.925877	1298.7558	-0.45353	-0.0001968	0.071329	3.0952E-05	-0.3822	-0.00016585	433.925890431668	26.486	0.21795	26.486	26.376	26.594	0					11	4	4	0	0	0	0.44025	1	9497	9497		48.602	27.764	1	626220			48674	1919	32195	32334	49282	49282					0.1183728869443712
VVQERESLLVK	11	Unmodified	_VVQERESLLVK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	433.9258728027344	3	433.925877	1298.7558	-0.50782	-0.00022036	-0.091952	-3.99E-05	-0.59978	-0.00026026	433.92586886051345	26.46	0.27069	26.46	26.349	26.62	0					9	5	3	0	0	0	0.59078	1	9341	9341		37.6	15.914	1	326820			48675	1919	32195	32334	49283	49283					0.1183728869443712
VVQEVVDGK	9	Unmodified	_VVQEVVDGK_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7715148925781	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.357	1	22.357	21.857	22.857	0								0	0	0	0.14961	1	6567	6567		59.931	10.395	1			+	48676	645	32196	32335	49284	49284					0.041857502063294305
VVQEVVDGK	9	Unmodified	_VVQEVVDGK_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.7713623046875	2	486.771657	971.528761	-0.085346	-4.1544E-05	-0.31037	-0.00015108	-0.39572	-0.00019262	486.77135581518445	22.526	0.21051	22.526	22.417	22.628	0					11	4	3	0	0	0	0.19891	1	7648	7648		61.765	15.308	1	486050		+	48677	645	32196	32335	49285	49285					0.041857502063294305
VVQEVVDGK	9	Unmodified	_VVQEVVDGK_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7714538574219	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.426	1	22.426	21.926	22.926	0								0	0	0	0.22075	1	6678	6678		47.96	1.9873	1			+	48678	645	32196	32335	49286	49286					0.041857502063294305
VVQEVVDGK	9	Unmodified	_VVQEVVDGK_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.771484375	2	486.771657	971.528761	-0.54504	-0.00026531	0.73422	0.0003574	0.18918	9.2087E-05	486.771712378569	22.503	0.21652	22.503	22.438	22.655	0					9	4	3	0	0	0	0.017741	1	7504	7504		125.71	27.131	1	401930		+	48679	645	32196	32335	49287	49287					0.041857502063294305
VVQGDPREL	9	Unmodified	_VVQGDPREL_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	506.77496337890625	2	506.774731	1011.53491	-0.67847	-0.00034383	0.72645	0.00036815	0.047978	2.4314E-05	506.77519294446085	26.797	0.33684	26.797	26.604	26.941	0					18	12	2	0	0	0	0.21263	1	8483	8483		60.118	7.1816	1	109320			48680	4179	32197	32336	49288	49288					0.029602684378460253
VVQGDPREL	9	Unmodified	_VVQGDPREL_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.77459716796875	2	506.774731	1011.53491	1.1016	0.00055827	-1.012	-0.00051287	0.089586	4.54E-05	506.7741113963111	27.075	0.71112	27.075	26.71	27.422	0					43	14	5	0	0	0	0.28897	1	9731	9731		51.193	11.94	1	818110			48681	4179	32197	32336	49289	49289					0.029602684378460253
VVQGDPREL	9	Unmodified	_VVQGDPREL_					0	0	0		SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7745666503906	2	506.774731	1011.53491	1.2762	0.00064673	-1.6654	-0.00084398	-0.38922	-0.00019725	506.7739815183918	27.044	0.56742	27.044	26.637	27.204	0					33	11	4	0	0	0	0.3269	1	9597	9597		47.96	8.7067	1	713680			48682	4179	32197	32336	49290	49290					0.029602684378460253
VVQIFRIMQ	9	Unmodified	_VVQIFRIMQ_					0	0	0		KCNB1|p.R303Q|1|0.31|ENSG00000158445|chr20:49374652-49374652|C/T|missense_variant	KCNB1|p.R303Q|1|0.31|ENSG00000158445|chr20:49374652-49374652|C/T|missense_variant	KCNB1|p.R303Q|1|0.31|ENSG00000158445|chr20:49374652-49374652|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.32958984375	2	567.328619	1132.64269	3.4714	0.0019694	-0.2761	-0.00015664	3.1953	0.0018128	567.3282896192472	52.105	1.2348	52.105	51.799	53.034	0					176	74	3	0	0	0	0.59802	1	20473	20473		21.96	0	1	343240			48683	11242	32198	32337	49291	49291					0.08166941767581193
VVQKKIAEK	9	Unmodified	_VVQKKIAEK_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.8345336914062	2	521.834591	1041.65463	0.79372	0.00041419	-0.43037	-0.00022458	0.36335	0.00018961	521.8344109023399	13.764	0.059943	13.764	13.712	13.772	0					5	3	2	0	0	0	0.048471	1	2730	2730		95.815	8.1187	1	97908			48684	6275	32199	32338	49292	49292					0.13546881782394848
VVQKKIAEK	9	Unmodified	_VVQKKIAEK_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.8345336914062	2	521.834591	1041.65463	0.079418	4.1443E-05	-0.091044	-4.751E-05	-0.011626	-6.0667E-06	521.8345170266966	14.055	0.10109	14.055	14.003	14.104	0					4	2	2	0	0	0	0.032383	1	3349	3349		106.68	40.254	1	1393000			48685	6275	32199	32338	49293	49293					0.13546881782394848
VVQKKIAEK	9	Unmodified	_VVQKKIAEK_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.8353271484375	2	521.834591	1041.65463	0.36132	0.00018855	1.2641	0.00065965	1.6254	0.0008482	521.835272641527	13.787	0.042529	13.787	13.767	13.81	0					4	2	2	0	0	0	0.1424	1	2883	2883		69.628	11.398	1	75733			48686	6275	32199	32338	49294	49294					0.13546881782394848
VVQKKIAEK	9	Unmodified	_VVQKKIAEK_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	521.8352661132812	2	521.834591	1041.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.822	1	13.822	13.322	14.322	0								0	0	0	0.024201	1	2828	2828		98.629	29.002	1				48687	6275	32199	32338	49295	49295					0.13546881782394848
VVQKKIAEK	9	Unmodified	_VVQKKIAEK_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	348.22528076171875	3	348.225486	1041.65463	1.488	0.00051817	-1.704	-0.00059338	-0.21598	-7.5211E-05	348.22477228785135	14.001	0.11035	14.001	13.946	14.056	0					6	2	3	0	0	0	0.055856	1	3395	3395		109.48	21.301	1	172450			48688	6275	32199	32338	49296	49296					0.13546881782394848
VVQKKIAEK	9	Unmodified	_VVQKKIAEK_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.8346557617188	2	521.834591	1041.65463	3.3938	0.001771	-2.5659	-0.001339	0.82794	0.00043205	521.8333427637032	14.012	0.1103	14.012	13.931	14.042	0					6	2	3	0	0	0	0.023928	1	3388	3388		115.49	27.798	1	438670			48689	6275	32199	32338	49297	49297					0.13546881782394848
VVQNSFEKMEE	11	Unmodified	_VVQNSFEKMEE_					0	0	0			REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.21405029296875	3	447.211465	1338.61257	0.60931	0.00027249	4.4836	0.0020051	5.0929	0.0022776	447.2137853292891	22.523	0.23206	22.523	22.384	22.616	0					13	5	4	0	0	0	0.74458	1	7343	7343		23.378	3.3474	1	557120	+	+	48690	12581	32200	32339	49298	49298					-0.04319506478941548
VVQPLSIQ	8	Unmodified	_VVQPLSIQ_					0	0	0		ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant;ENSG00000112379|ENST00000251691|ARFGEF3	ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant	ARFGEF3|p.F1125*|1|0.07|ENSG00000112379|chr6:138293997-138293998|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.26593017578125	2	442.26601	882.517468	0.070144	3.1022E-05	-0.32363	-0.00014313	-0.25348	-0.00011211	442.2658485425761	26.551	1.1411	26.551	25.721	26.862	0					59	21	4	0	0	0	0.68432	1	9319	9319		35.618	3.6634	1	3826700			48691	194	32201	32340	49299	49299					0.07150972902854846
VVQQQKLKK	9	Unmodified	_VVQQQKLKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.8541259765625	2	549.853316	1097.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.759	1	13.759	13.259	14.259	0								0	0	0	0.15451	1	2731	2731		58.782	18.004	1				48692	2324	32202	32341	49300	49300					0.14713973048037587
VVQQWTLKL	9	Unmodified	_VVQQWTLKL_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8|KAT14	REV__nc|ENSG00000149474|Q9H8E8|KAT14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.8330688476562	2	557.834591	1113.65463	1.2946	0.00072218	-4.0793	-0.0022756	-2.7846	-0.0015534	557.8324930688956	29.123	0.064932	29.123	29.061	29.125	0					4	2	2	0	0	0	0.37197	1	9151	9151		44.117	0	1	43440	+		48693	15421	32203	32342	49301	49301					0.1023488178241223
VVQRVEIHK	9	Unmodified	_VVQRVEIHK_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.3357543945312	2	554.33529	1106.65603	0.60437	0.00033503	0.32033	0.00017757	0.9247	0.00051259	554.3354894536693	18.334	0.31805	18.334	18.282	18.6	0					15	7	4	0	0	0	0.026538	1	5352	5352		112.41	16.377	1	2978300			48694	7803	32204	32343	49302	49302					0.10696515871154588
VVQRVEIHK	9	Unmodified	_VVQRVEIHK_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	554.3359375	2	554.33529	1106.65603	0.15817	8.7677E-05	0.84607	0.000469	1.0042	0.00055668	554.3358082238547	18.069	0.14408	18.069	17.989	18.133	0					9	4	3	0	0	0	0.1424	1	4650	4650		69.628	14.851	1	208190			48695	7803	32204	32343	49303	49303					0.10696515871154588
VVQRVEIHK	9	Unmodified	_VVQRVEIHK_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.3356323242188	2	554.33529	1106.65603	1.6374	0.00090765	-0.88714	-0.00049177	0.75023	0.00041588	554.3347618328349	18.301	0.32065	18.301	18.19	18.51	0					10	6	3	0	0	0	0.095583	1	5607	5607		80.455	13.493	1	2999300			48696	7803	32204	32343	49304	49304					0.10696515871154588
VVQRVEIHK	9	Unmodified	_VVQRVEIHK_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.89263916015625	3	369.892619	1106.65603	-0.11376	-4.2081E-05	0.23771	8.7927E-05	0.12394	4.5846E-05	369.8927621537585	18.11	0.11453	18.11	18.05	18.165	0					4	2	2	0	0	0	0.24095	1	4671	4671		93.143	20.264	1	366060			48697	7803	32204	32343	49305	49305					0.10696515871154588
VVQRVEIHK	9	Unmodified	_VVQRVEIHK_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.33544921875	2	554.33529	1106.65603	-1.1307	-0.00062676	1.3118	0.00072719	0.18116	0.00010042	554.3361500628854	18.144	0.15942	18.144	18.034	18.194	0					8	3	3	0	0	0	0.21263	1	4664	4664		60.118	7.1816	1	262060			48698	7803	32204	32343	49306	49306					0.10696515871154588
VVQSLNTLTGA	11	Unmodified	_VVQSLNTLTGA_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.8090209960938	2	551.808771	1101.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.121	1	11.121	10.621	11.621	0								0	0	0	0.42444	1	2207	2207		31.634	0.10446	1		+		48699	13548	32205	32344	49307	49307					0.05625093297862804
VVQSRLDKASL	11	Unmodified	_VVQSRLDKASL_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1;REV__CLASP2|p.N188Kfs*2|1|0.21|ENSG00000163539|chr3:33619657-33619658|-/T|frameshift_variant	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	405.9078674316406	3	405.906705	1214.69829	-0.10708	-4.3465E-05	2.9805	0.0012098	2.8734	0.0011663	405.9079284666112	25.019	0.1488	25.019	24.906	25.055	0					5	3	2	0	0	0	0.60833	1	7897	7897		36.318	3.2782	1	58973	+		48700	13212;12507	32206	32345	49308	49308					0.0995244648888729
VVQSVGGPSY	10	Unmodified	_VVQSVGGPSY_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-3|SPG11	REV__nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.75592041015625	2	496.756007	991.497461	-0.76189	-0.00037848	0.89565	0.00044492	0.13376	6.6445E-05	496.7564250179367	27.347	0.16768	27.347	27.237	27.405	0					6	3	2	0	0	0	0.52707	1	9912	9912		42.396	0	1	172250	+		48701	13711	32207	32346	49309	49309					0.001371771722460835
VVQTSLQA	8	Unmodified	_VVQTSLQA_					0	0	0		PCM1|p.D1817V|1|0.31|ENSG00000078674|chr8:18011766-18011766|A/T|missense_variant	PCM1|p.D1817V|1|0.31|ENSG00000078674|chr8:18011766-18011766|A/T|missense_variant	PCM1|p.D1817V|1|0.31|ENSG00000078674|chr8:18011766-18011766|A/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	423.2395935058594	2	423.239993	844.465432	-0.35105	-0.00014858	-0.2078	-8.795E-05	-0.55886	-0.00023653	423.23988778728517	16.208	0.26931	16.208	16.047	16.316	0					11	5	3	0	0	0	0.60719	1	4407	4407		47.916	0	1	235480			48702	11911	32208	32347	49310	49310					0.03697809489085557
VVQVREKK	8	Unmodified	_VVQVREKK_					0	0	0		ENSG00000203685|ENST00000366788|STUM	ENSG00000203685|ENST00000366788|STUM	ENSG00000203685|ENST00000366788|STUM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	329.2112731933594	3	329.209948	984.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.308	1	17.308	16.808	17.808	0								0	0	0	1.7419	1	5117	5117		11.511	0.64546	1				48703	7653	32209	32348	49311	49311					0.11509441951125154
VVRHYMPKL	9	Unmodified	_VVRHYMPKL_					0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.55474853515625	3	381.55495	1141.64302	0.82926	0.00031641	-0.61022	-0.00023283	0.21904	8.3576E-05	381.5547036710049	27.257	0.30336	27.257	27.169	27.472	0					11	7	2	0	0	0	0.30951	1	9491	9491		49.442	8.6634	1	1725100	+		48704	14917	32210	32349	49312	49312					0.07786361487433169
VVRHYMPKL	9	Unmodified	_VVRHYMPKL_					0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	571.8292236328125	2	571.828786	1141.64302	-0.055427	-3.1695E-05	0.61983	0.00035444	0.5644	0.00032274	571.8291841840462	27.246	0.46898	27.246	27.114	27.583	0					21	11	2	0	0	0	0.028876	1	9501	9501		82.305	82.305	1	1823000	+		48705	14917	32210	32349	49313	49313					0.07786361487433169
VVRHYMPKL	9	Unmodified	_VVRHYMPKL_					0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.8289184570312	2	571.828786	1141.64302	-0.0085635	-4.8969E-06	-0.043417	-2.4827E-05	-0.05198	-2.9724E-05	571.8287120184493	27.254	0.26945	27.254	27.135	27.405	0					18	5	5	0	0	0	0.07136	1	9859	9859		71.296	71.296	1	802800	+		48706	14917	32210	32349	49314	49314					0.07786361487433169
VVRNKESSQ	9	Unmodified	_VVRNKESSQ_					0	0	0			REV__ENSG00000186509|ENST00000335397|OR9Q1	REV__ENSG00000186509|ENST00000335397|OR9Q1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7858276367188	2	523.783087	1045.55162	5.3095	0.002781	-0.76848	-0.00040252	4.541	0.0023785	523.7826519621646	23.65	0.23513	23.65	23.549	23.784	0					14	8	2	0	0	0	0.44593	1	7117	7117		37.812	2.6595	1	692730	+		48707	17081	32211	32350	49315	49315					0.030667693238001448
VVRTAGRWW	9	Unmodified	_VVRTAGRWW_					0	0	0		ENST00000495526.5_1_1:40207631-40211283:+|nuORF	ENST00000495526.5_1_1:40207631-40211283:+|nuORF	ENST00000495526.5_1_1:40207631-40211283:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.8138427734375	2	565.814525	1129.6145	-1.1469	-0.00064895	0.51	0.00028857	-0.63693	-0.00036039	565.8147699869486	29.926	0.26857	29.926	29.794	30.062	0					19	7	3	0	0	0	0.47038	1	10105	10105		35.618	16.258	1	552570			48708	10107	32212	32351	49316	49316					0.05487379902501743
VVRVLTEPY	9	Unmodified	_VVRVLTEPY_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	538.3110961914062	2	538.310949	1074.60735	0.81541	0.00043894	-0.64046	-0.00034477	0.17494	9.4173E-05	538.3105746186462	33.04	0.4254	33.04	32.827	33.252	0					27	18	2	0	0	0	0.57706	1	10665	10665		24.203	1.6231	1	66676	+		48709	14588	32213	32352	49317	49317					0.0730260251141317
VVSADLPNA	9	Unmodified	_VVSADLPNA_					0	0	0		LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	443.2375183105469	2	443.23745	884.460347	-0.25086	-0.00011119	-0.28674	-0.00012709	-0.5376	-0.00023829	443.2374530438998	23.832	0.26732	23.832	23.711	23.979	0					9	5	2	0	0	0	0.39215	1	8272	8272		42.396	0	1	143220			48710	3316	32214	32353	49318	49318					0.013495056264787308
VVSDSTFLAK	10	Unmodified	_VVSDSTFLAK_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7937622070312	2	533.792589	1065.57063	1.1196	0.00059763	1.0919	0.00058287	2.2115	0.0011805	533.7929841085115	32.25	0.15168	32.25	32.191	32.343	0					6	3	2	0	0	0	0.34667	1	12251	12251		62.107	17.991	1	112650			48711	5939	32215	32354	49319	49319					0.04046305894848956
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.29296875	2	526.292756	1050.57096	1.3343	0.00070223	-1.3699	-0.00072097	-0.035609	-1.8741E-05	526.2919446465369	18.91	0.153	18.91	18.826	18.979	0					13	4	4	0	0	0	0.014661	1	4784	4784		125.71	48.939	1	940800			48712	5580	32216	32355	49320	49320					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.2924194335938	2	526.292756	1050.57096	2.0007	0.0010529	-2.2583	-0.0011885	-0.25762	-0.00013559	526.2913489450069	19.223	0.29044	19.223	19.124	19.414	0					15	6	3	0	0	0	0.01077	1	5772	5772		134.77	60.511	1	10573000			48713	5580	32216	32355	49321	49321					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	351.19757080078125	3	351.197596	1050.57096	1.4502	0.00050929	-1.2821	-0.00045025	0.16811	5.9041E-05	351.1970684040897	19.123	0.31324	19.123	18.967	19.281	0					22	6	5	0	0	0	0.070005	1	6000	6000		88.177	40.217	1	6423500			48714	5580	32216	32355	49322	49322					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2926635742188	2	526.292756	1050.57096	1.7658	0.00092935	-3.3073	-0.0017406	-1.5415	-0.00081125	526.2901312674353	19.171	0.60838	19.171	19.017	19.625	0					18	9	3	0	0	0	0.01942	1	6003	6003		117.81	43.556	1	3335900			48715	5580	32216	32355	49323	49323					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2929077148438	2	526.292756	1050.57096	1.6852	0.00088689	-0.71041	-0.00037389	0.97475	0.000513	526.2923778984316	19.001	0.19411	19.001	18.899	19.093	0					9	4	3	0	0	0	0.031595	1	5061	5061		101.46	46.684	1	643570			48716	5580	32216	32355	49324	49324					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.29296875	2	526.292756	1050.57096	1.2029	0.00063309	-0.6045	-0.00031814	0.59841	0.00031494	526.2921466567234	18.988	0.27646	18.988	18.928	19.205	0					14	6	4	0	0	0	0.070127	1	5074	5074		81.525	28.588	1	678420			48717	5580	32216	32355	49325	49325					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2930908203125	2	526.292756	1050.57096	0.61177	0.00032197	-0.12451	-6.5528E-05	0.48726	0.00025644	526.2925757459188	19.103	0.26212	19.103	19.047	19.309	0					16	5	5	0	0	0	0.00076124	1	5853	5853		182.39	65.488	1	4094800			48718	5580	32216	32355	49326	49326					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.29296875	2	526.292756	1050.57096	1.6273	0.00085644	-1.9204	-0.0010107	-0.29313	-0.00015427	526.2914873011943	19.137	0.2617	19.137	19.031	19.293	0					10	5	2	0	0	0	0.0073977	1	5848	5848		143.37	53.004	1	8600100			48719	5580	32216	32355	49327	49327					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.19757080078125	3	351.197596	1050.57096	1.4587	0.00051229	-1.7861	-0.00062728	-0.3274	-0.00011498	351.19684600457003	19.13	0.26523	19.13	18.98	19.245	0					17	5	4	0	0	0	0.17062	1	5851	5851		65.157	3.466	1	5507100			48720	5580	32216	32355	49328	49328					0.04769725614710296
VVSELKIPV	9	Unmodified	_VVSELKIPV_					0	0	0		ENST00000377791.3_1_6:26138939-26139047:+|nuORF	ENST00000377791.3_1_6:26138939-26139047:+|nuORF	ENST00000377791.3_1_6:26138939-26139047:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.31024169921875	2	492.310418	982.606283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.108	1	37.108	36.608	37.608	0								0	0	0	0.2591	1	14479	14479		42.396	0	1				48721	9056	32217	32356	49329	49329					0.11428388142519452
VVSETISSK	9	Unmodified	_VVSETISSK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.2633361816406	2	475.263665	948.512776	-0.11985	-5.696E-05	-0.71069	-0.00033776	-0.83054	-0.00039473	475.2633766596632	20.487	0.16551	20.487	20.38	20.546	0					7	3	3	0	0	0	0.22837	1	6633	6633		58.23	12.258	1	348480			48722	6758	32218	32357	49330	49330					0.03646043969445145
VVSETISSK	9	Unmodified	_VVSETISSK_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.2641296386719	2	475.263665	948.512776	-0.086455	-4.1089E-05	0.22107	0.00010506	0.13461	6.3976E-05	475.2640693520214	20.288	0.10546	20.288	20.234	20.34	0					4	2	2	0	0	0	0.30951	1	5688	5688		49.442	17.487	1	61560			48723	6758	32218	32357	49331	49331					0.03646043969445145
VVSETLAQK	9	Unmodified	_VVSETLAQK_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.77923583984375	2	487.779482	973.544411	0.73459	0.00035832	-1.6854	-0.0008221	-0.9508	-0.00046378	487.778703745817	22.212	0.18739	22.212	22.119	22.307	0					10	4	3	0	0	0	0.032383	1	7173	7173		106.68	39.189	1	924900			48724	7622	32219	32358	49332	49332					0.056580367233777906
VVSETLAQK	9	Unmodified	_VVSETLAQK_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7792053222656	2	487.779482	973.544411	-0.5303	-0.00025867	0.064668	3.1544E-05	-0.46564	-0.00022713	487.7794988128669	22.097	0.16802	22.097	21.988	22.156	0					8	3	3	0	0	0	0.098791	1	7309	7309		79.713	13.283	1	981120			48725	7622	32219	32358	49333	49333					0.056580367233777906
VVSETNDTK	9	Unmodified	_VVSETNDTK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.74871826171875	2	496.748379	991.482204	0.71768	0.00035651	-0.90623	-0.00045017	-0.18855	-9.3664E-05	496.74793924492394	14.657	0.21237	14.657	14.578	14.79	0					10	5	3	0	0	0	0.024312	1	3614	3614		114.86	51.324	1	758330			48726	2650	32220	32359	49334	49334					-0.013877344156071558
VVSETNDTK	9	Unmodified	_VVSETNDTK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.748046875	2	496.748379	991.482204	0.75771	0.00037639	-1.1739	-0.00058314	-0.41621	-0.00020675	496.7477859928417	14.587	0.25843	14.587	14.539	14.797	0					9	5	2	0	0	0	0.024312	1	3827	3827		114.86	54.74	1	988350			48727	2650	32220	32359	49335	49335					-0.013877344156071558
VVSETNDTK	9	Unmodified	_VVSETNDTK_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7480773925781	2	496.748379	991.482204	0.97915	0.00048639	-1.13	-0.00056133	-0.15086	-7.494E-05	496.74778960629436	14.6	0.21994	14.6	14.491	14.711	0					11	4	3	0	0	0	0.026848	1	3659	3659		112.11	40.812	1	602700			48728	2650	32220	32359	49336	49336					-0.013877344156071558
VVSGLKQALG	10	Unmodified	_VVSGLKQALG_					0	0	0		ENST00000553865.1_1_14:99968556-99969378:+|nuORF;nc|ENSG00000090061|O75909-4|CCNK	ENST00000553865.1_1_14:99968556-99969378:+|nuORF	ENST00000553865.1_1_14:99968556-99969378:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2978515625	2	486.297842	970.581131	0.013729	6.6762E-06	0.023935	1.164E-05	0.037664	1.8316E-05	486.2978212037773	20.275	0.11902	20.275	20.191	20.31	0					6	4	2	0	0	0	0.65051	1	5387	5387		28.081	0.19925	1	74284			48729	10639	32221	32360	49337	49337					0.09466333339946686
VVSHSRSMV	9	Unmodified	_VVSHSRSMV_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-3|E2F7	REV__nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.26214599609375	2	501.263476	1000.5124	0.027064	1.3566E-05	-1.868	-0.00093635	-1.8409	-0.00092278	501.26276175869765	18.883	0.23935	18.883	18.761	19.001	0					8	5	2	0	0	0	0.47473	1	5868	5868		20.947	0	1	121030	+		48730	16075	32222	32361	49338	49338					0.012163457685915091
VVSKGGDK	8	Unmodified	_VVSKGGDK_					0	0	0		ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-3|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF	ENSG00000157870|ENST00000419916|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2267761230469	2	395.226885	788.439217	0.41245	0.00016301	-0.41807	-0.00016523	-0.0056167	-2.2199E-06	395.22655020320894	14.146	0.11715	14.146	14.088	14.205	0					4	2	2	0	0	0	0.74405	1	3466	3466		27.882	2.4321	1	246550			48731	5234	32223	32362	49339	49339					0.03653540317611714
VVSKSGSLK	9	Unmodified	_VVSKSGSLK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	452.7769470214844	2	452.776742	903.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.55	1	14.55	14.05	15.05	0								0	0	0	0.0029008	1	3011	3011		117.53	32.365	1				48732	5871	32224	32363	49340	49340					0.08330357931572507
VVSKSGSLK	9	Unmodified	_VVSKSGSLK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.7766418457031	2	452.776742	903.538931	-0.11773	-5.3307E-05	-0.45932	-0.00020797	-0.57705	-0.00026127	452.77654623647953	14.806	0.16547	14.806	14.697	14.862	0					6	3	2	0	0	0	0.047855	1	3909	3909		96.034	22.059	1	1588400			48733	5871	32224	32363	49341	49341					0.08330357931572507
VVSKSGSLK	9	Unmodified	_VVSKSGSLK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7768859863281	2	452.776742	903.538931	0.34115	0.00015446	0.055991	2.5351E-05	0.39714	0.00017982	452.7767939085924	14.591	0.08592	14.591	14.537	14.623	0					6	3	2	0	0	0	0.022525	1	3108	3108		117.81	43.836	1	297010			48734	5871	32224	32363	49342	49342					0.08330357931572507
VVSKSGSLK	9	Unmodified	_VVSKSGSLK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	452.7767639160156	2	452.776742	903.538931	-0.029649	-1.3425E-05	0.40837	0.0001849	0.37872	0.00017148	452.77692441377326	14.587	0.083352	14.587	14.529	14.612	0					8	3	3	0	0	0	0.047855	1	3119	3119		96.034	21.779	1	182460			48735	5871	32224	32363	49343	49343					0.08330357931572507
VVSKSGSLK	9	Unmodified	_VVSKSGSLK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	452.7764587402344	2	452.776742	903.538931	-0.41348	-0.00018721	-0.06384	-2.8905E-05	-0.47732	-0.00021612	452.77667875637553	14.769	0.26773	14.769	14.66	14.928	0					10	5	3	0	0	0	0.032181	1	3758	3758		106.88	42.673	1	2673800			48736	5871	32224	32363	49344	49344					0.08330357931572507
VVSLATNLK	9	Unmodified	_VVSLATNLK_					0	0	0			REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant	REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.7921447753906	2	472.792392	943.570232	0.22898	0.00010826	-1.7817	-0.00084239	-1.5528	-0.00073413	472.7921172857758	20.009	0.15843	20.009	19.92	20.078	0					6	3	2	0	0	0	0.44593	1	6157	6157		37.812	1.3648	1	579980	+		48737	20779	32225	32364	49345	49345					0.09618930965655181
VVSLFHLY	8	Unmodified	_VVSLFHLY_					0	0	0			REV__ENST00000574735.1_1_17:5009121-5012368:-|nuORF	REV__ENST00000574735.1_1_17:5009121-5012368:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.2742614746094	2	489.276378	976.538203	-0.074503	-3.6453E-05	-3.2889	-0.0016092	-3.3634	-0.0016456	489.27471983502545	31.052	0.45533	31.052	30.909	31.364	0					23	10	4	0	0	0	0.36926	1	11639	11639		74.517	0	1	1111800	+		48738	16218	32226	32365	49346	49346					0.04899563282504005
VVSNHYGGM	9	Unmodified	_VVSNHYGGM_					0	0	0		USP15|p.A879V|1|0.39|ENSG00000135655|chr12:62396360-62396360|C/T|missense_variant	USP15|p.A879V|1|0.39|ENSG00000135655|chr12:62396360-62396360|C/T|missense_variant	USP15|p.A879V|1|0.39|ENSG00000135655|chr12:62396360-62396360|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	482.72210693359375	2	482.221277	962.428001	-0.10371	-5.001E-05	0.68317	0.00032944	0.57946	0.00027943	482.2218733497364	39.648	0.29755	39.648	39.426	39.723	0					16	12	2	0	0	0	0.57706	1	15039	15039		24.203	0	1	91989			48739	23096	32227	32366	49347	49347					-0.054716050481602
VVSPVCRPAA	10	Unmodified	_VVSPVCRPAA_					0	0	0		ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2817687988281	2	499.776219	997.537886	1.0735	0.00053649	-0.90424	-0.00045192	0.16922	8.4573E-05	499.7755072798583	24.471	1.7389	24.471	24.312	26.051	0					61	33	2	0	0	0	0.54197	1	8574	8574		40.778	7.9657	1	2775100			48740	1147	32228	32367	49348	49348					0.039018202910028776
VVSPYSAPD	9	Unmodified	_VVSPYSAPD_					0	0	0			REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.72747802734375	2	467.729458	933.444362	-1.1055	-0.0005171	-3.5822	-0.0016755	-4.6877	-0.0021926	467.7280586691623	18.691	0.24047	18.691	18.578	18.818	0					11	5	3	0	0	0	0.45358	1	5787	5787		37.159	1.5408	1	719760	+		48741	12318	32229	32368	49349	49349					-0.02502200610433647
VVSQAISP	8	Unmodified	_VVSQAISP_					0	0	0		ENST00000264954.4_1_4:7065872-7069814:-|nuORF	ENST00000264954.4_1_4:7065872-7069814:-|nuORF	ENST00000264954.4_1_4:7065872-7069814:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	400.7288513183594	2	400.729261	799.443968	0.82936	0.00033235	-1.0273	-0.00041166	-0.19792	-7.9313E-05	400.7288841932611	40.543	0.20879	40.543	40.441	40.65	0					14	8	2	0	0	0	0.63077	1	15965	15965		44.117	5.3107	1	122310			48742	8338	32230	32369	49350	49350					0.03622424460365892
VVSQAKRSL	9	Unmodified	_VVSQAKRSL_					0	0	0			REV__ENST00000274473.6_1_5:126791176-126791221:+|nuORF	REV__ENST00000274473.6_1_5:126791176-126791221:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	494.3008117675781	2	494.300916	986.587279	0.71663	0.00035423	-0.92351	-0.00045649	-0.20688	-0.00010226	494.3002803065566	54.481	0.39796	54.481	54.378	54.776	0					52	24	3	0	0	0	0.48389	1	15966	15966		34.173	7.4796	1	527720	+		48743	18115	32231	32370	49351	49351					0.09344851571461277
VVSQDVKLS	9	Unmodified	_VVSQDVKLS_					0	0	0		TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B	TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant	TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.77947998046875	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.991	1	21.991	21.491	22.491	0								0	0	0	0.1633	1	6474	6474		56.721	0	1				48744	3844	32232	32371	49352	49352					0.056580367233777906
VVSQFKILV	9	Unmodified	_VVSQFKILV_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.8241577148438	2	516.826235	1031.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.358	1	13.358	12.858	13.858	0								0	0	0	0.1633	1	2677	2677		56.721	15.294	1				48745	5940	32233	32372	49353	49353					0.12336380896454102
VVSQPSQAS	9	Unmodified	_VVSQPSQAS_					0	0	0		ENST00000467107.1_1_6:31082567-31082642:+|nuORF	ENST00000467107.1_1_6:31082567-31082642:+|nuORF	ENST00000467107.1_1_6:31082567-31082642:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.7323303222656	2	451.732532	901.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.872	1	22.872	22.372	23.372	0								0	0	0	0.3368	1	6887	6887		27.882	0	1				48746	9797	32234	32373	49354	49354					-0.004156823789003283
VVSQTAVQ	8	Unmodified	_VVSQTAVQ_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	416.23187255859375	2	416.232168	830.449782	0.066741	2.778E-05	-0.47425	-0.0001974	-0.40751	-0.00016962	416.2318916197088	15.745	0.36458	15.745	15.484	15.849	0					16	7	3	0	0	0	0.7126	1	4332	4332		31.955	2.8053	1	290870			48747	7609	32235	32374	49355	49355					0.027775229720305106
VVSQTAVQ	8	Unmodified	_VVSQTAVQ_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	416.2320251464844	2	416.232168	830.449782	-0.33911	-0.00014115	-0.13492	-5.6158E-05	-0.47403	-0.00019731	416.2321272647433	15.755	0.41639	15.755	15.497	15.913	0					17	8	3	0	0	0	0.67394	1	4188	4188		37.159	5.2042	1	339430			48748	7609	32235	32374	49356	49356					0.027775229720305106
VVSRSFKPD	9	Unmodified	_VVSRSFKPD_					0	0	0		ENSG00000185666|ENST00000358763|SYN3	ENSG00000185666|ENST00000358763|SYN3	ENSG00000185666|ENST00000358763|SYN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	345.5247497558594	3	345.525825	1033.55564	-1.9636	-0.00067846	-1.8572	-0.0006417	-3.8207	-0.0013202	345.5254124580811	22.333	0.32902	22.333	22.276	22.605	0					14	7	3	0	0	0	0.54267	1	6640	6640		27.882	3.3631	1	212680			48749	7095	32236	32375	49357	49357					0.04020858817534645
VVSRVSRLSF	10	Unmodified	_VVSRVSRLSF_					0	0	0			REV__ENSG00000168569|ENST00000307366|TMEM223	REV__ENSG00000168569|ENST00000307366|TMEM223	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	383.8960266113281	3	383.89614	1148.66659	0.30121	0.00011563	-1.5501	-0.00059506	-1.2488	-0.00047943	383.8955222598319	27.063	0.30737	27.063	26.862	27.169	0					11	6	2	0	0	0	0.60281	1	9772	9772		33.922	2.2874	1	1072800	+		48750	16268	32237	32376	49358	49358					0.09820498525596122
VVSSTVTQL	9	Unmodified	_VVSSTVTQL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2662048339844	2	467.266207	932.517862	0.048335	2.2585E-05	-0.78578	-0.00036717	-0.73744	-0.00034458	467.26592095806126	23.149	0.14812	23.149	23.084	23.232	0					9	4	3	0	0	0	0.4966	1	6684	6684		32.812	3.6629	1	211170			48751	3791	32238	32377	49359	49359					0.04890347832053976
VVSSTVTQL	9	Unmodified	_VVSSTVTQL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2660217285156	2	467.266207	932.517862	0.61663	0.00028813	-1.5982	-0.00074679	-0.98158	-0.00045866	467.2654554999114	23.378	0.4672	23.378	23.167	23.634	0					17	9	4	0	0	0	0.25716	1	7931	7931		54.776	8.8041	1	772540			48752	3791	32238	32377	49360	49360					0.04890347832053976
VVSSTVVTAA	10	Unmodified	_VVSSTVVTAA_					0	0	0		ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.26629638671875	2	467.266207	932.517862	0.28665	0.00013394	-0.13576	-6.3435E-05	0.15089	7.0508E-05	467.26603345055315	23.465	0.098114	23.465	23.417	23.515	0					4	2	2	0	0	0	0.44601	1	7782	7782		51.193	1.1592	1	93840			48753	8978	32239	32378	49361	49361					0.04890347832031239
VVSSTVVTAA	10	Unmodified	_VVSSTVVTAA_					0	0	0		ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	467.2658386230469	2	467.266207	932.517862	0.37114	0.00017342	-1.3481	-0.0006299	-0.97692	-0.00045648	467.26554683030406	23.491	0.3978	23.491	23.263	23.661	0					15	9	3	0	0	0	0.17732	1	7774	7774		82.241	6.0708	1	1282300			48754	8978	32239	32378	49362	49362					0.04890347832031239
VVSSTVVTAA	10	Unmodified	_VVSSTVVTAA_					0	0	0		ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.26580810546875	2	467.266207	932.517862	-0.13189	-6.1629E-05	-0.55994	-0.00026164	-0.69184	-0.00032327	467.26587830879504	23.421	0.21719	23.421	23.312	23.529	0					12	4	4	0	0	0	0.0099257	1	8055	8055		143.11	6.8388	1	963190			48755	8978	32239	32378	49363	49363					0.04890347832031239
VVSSTVVTAA	10	Unmodified	_VVSSTVVTAA_					0	0	0		ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	467.26568603515625	2	467.266207	932.517862	-0.19113	-8.9309E-05	-0.27602	-0.00012897	-0.46715	-0.00021828	467.26606819832955	23.227	0.11135	23.227	23.173	23.284	0					4	2	2	0	0	0	0.37692	1	7063	7063		58.782	4.0056	1	165550			48756	8978	32239	32378	49364	49364					0.04890347832031239
VVSSTVVTAA	10	Unmodified	_VVSSTVVTAA_					0	0	0		ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	ENST00000372504.5_2_1:43314964-43315012:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.26556396484375	2	467.266207	932.517862	-0.50634	-0.00023659	-0.12404	-5.7958E-05	-0.63037	-0.00029455	467.2661454215494	23.393	0.21658	23.393	23.284	23.501	0					11	4	3	0	0	0	0.063601	1	7917	7917		104.75	16.57	1	1597600			48757	8978	32239	32378	49365	49365					0.04890347832031239
VVSSVVKVK	9	Unmodified	_VVSSVVKVK_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;ZC3H14|p.K307Nfs*48|1|0.26|ENSG00000100722|chr14:88574746-88574746|A/-|frameshift_variant	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.8103942871094	2	472.810585	943.606617	-0.34077	-0.00016112	-0.44196	-0.00020896	-0.78272	-0.00037008	472.8103703887104	20.728	0.10723	20.728	20.661	20.769	0					6	3	2	0	0	0	0.24095	1	5591	5591		56.721	15.943	1	136820			48758	2059	32240	32379	49366	49366					0.13255807862378788
VVSSVVKVK	9	Unmodified	_VVSSVVKVK_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;ZC3H14|p.K307Nfs*48|1|0.26|ENSG00000100722|chr14:88574746-88574746|A/-|frameshift_variant	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	472.8104553222656	2	472.810585	943.606617	-0.55661	-0.00026317	0.41116	0.0001944	-0.14545	-6.8768E-05	472.8107656441088	21.049	0.13403	21.049	20.959	21.093	0					7	3	3	0	0	0	0.0406	1	6634	6634		98.629	27.334	1	1241800			48759	2059	32240	32379	49367	49367					0.13255807862378788
VVSSVVKVK	9	Unmodified	_VVSSVVKVK_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;ZC3H14|p.K307Nfs*48|1|0.26|ENSG00000100722|chr14:88574746-88574746|A/-|frameshift_variant	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.8103332519531	2	472.810585	943.606617	-0.70256	-0.00033218	0.40466	0.00019133	-0.2979	-0.00014085	472.81068719695566	20.763	0.10459	20.763	20.71	20.814	0					5	3	2	0	0	0	0.07136	1	5853	5853		87.696	43.58	1	127640			48760	2059	32240	32379	49368	49368					0.13255807862378788
VVSSVVKVK	9	Unmodified	_VVSSVVKVK_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;ZC3H14|p.K307Nfs*48|1|0.26|ENSG00000100722|chr14:88574746-88574746|A/-|frameshift_variant	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	472.8102722167969	2	472.810585	943.606617	-0.68901	-0.00032577	0.11656	5.5109E-05	-0.57246	-0.00027066	472.8106468409409	20.955	0.16526	20.955	20.896	21.062	0					7	3	3	0	0	0	0.028876	1	6883	6883		110.12	46.814	1	970920			48761	2059	32240	32379	49369	49369					0.13255807862378788
VVSTQFSAV	9	Unmodified	_VVSTQFSAV_					0	0	0			REV__AHNAK2|p.L4929F|1|0.16|ENSG00000185567|chr14:104940664-104940664|C/A|missense_variant	REV__AHNAK2|p.L4929F|1|0.16|ENSG00000185567|chr14:104940664-104940664|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.75152587890625	2	469.2531	936.491647	-2.2074	-0.0010358	-0.79062	-0.000371	-2.998	-0.0014068	469.2538151125501	33.597	0.15848	33.597	33.521	33.679	0					9	4	3	0	0	0	0.47038	1	11832	11832		35.618	0	1	128850	+		48762	12120	32241	32380	49370	49370					0.0208607866057946
VVSTVGMQR	9	Unmodified	_VVSTVGMQR_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	488.7657775878906	2	488.765852	975.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.662	1	22.662	22.162	23.162	0								0	0	0	0.091069	1	6441	6441		74.255	10.949	1			+	48763	645	32242	32381	49371	49371					0.028412299113597328
VVSTVGMQR	9	Unmodified	_VVSTVGMQR_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.7657775878906	2	488.765852	975.51715	-0.40637	-0.00019862	0.43054	0.00021043	0.024172	1.1815E-05	488.76617520641406	22.966	0.48061	22.966	22.874	23.354	0					16	11	3	0	0	0	0.048471	1	7541	7541		95.815	26.188	1	1402900		+	48764	645	32242	32381	49372	49372					0.028412299113597328
VVSTVGMQR	9	Unmodified	_VVSTVGMQR_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7657775878906	2	488.765852	975.51715	-1.2507	-0.00061129	1.2471	0.00060956	-0.0035499	-1.7351E-06	488.76656151671784	22.696	0.20516	22.696	22.596	22.801	0					12	7	3	0	0	0	0.1115	1	6713	6713		76.774	21.998	1	270560		+	48765	645	32242	32381	49373	49373					0.028412299113597328
VVSTVGMQR	9	Unmodified	_VVSTVGMQR_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7657470703125	2	488.765852	975.51715	0.61435	0.00030027	-0.89367	-0.0004368	-0.27932	-0.00013652	488.76545980981285	22.886	0.21777	22.886	22.794	23.012	0					12	4	4	0	0	0	0.035062	1	7809	7809		104.06	24.344	1	1240400		+	48766	645	32242	32381	49374	49374					0.028412299113597328
VVSTVGMQR	9	Unmodified	_VVSTVGMQR_					0	0	0		CON__P35900;ENSG00000171431|ENST00000167588|KRT20	CON__P35900	CON__P35900	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.7657470703125	2	488.765852	975.51715	0.78692	0.00038462	0.54615	0.00026694	1.3331	0.00065156	488.7659291856324	22.88	0.31226	22.88	22.772	23.084	0					9	6	2	0	0	0	0.15163	1	7689	7689		67.494	1.0644	1	697500		+	48767	645	32242	32381	49375	49375					0.028412299113597328
VVSVGVAAK	9	Unmodified	_VVSVGVAAK_					0	0	0			REV__ENSG00000119714|ENST00000650645|GPR68	REV__ENSG00000119714|ENST00000650645|GPR68	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	415.2611389160156	2	415.260728	828.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.246	1	20.246	19.746	20.746	0								0	0	0	0.24724	1	6250	6250		44.117	5.3107	1		+		48768	14252	32243	32382	49376	49376					0.08578990248406626
VVSVILEQK	9	Unmodified	_VVSVILEQK_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.81329345703125	2	507.813325	1013.6121	-0.093965	-4.7717E-05	0.40296	0.00020463	0.30899	0.00015691	507.8133571358054	32.339	0.15192	32.339	32.246	32.398	0					13	6	3	0	0	0	0.04067	1	10433	10433		98.582	40.352	1	168050			48769	151	32244	32383	49377	49377					0.10583486654184071
VVSVILEQK	9	Unmodified	_VVSVILEQK_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	507.81256103515625	2	507.813325	1013.6121	-0.61521	-0.00031241	0.37823	0.00019207	-0.23698	-0.00012034	507.813447758869	32.387	0.099594	32.387	32.317	32.417	0					7	4	2	0	0	0	0.28897	1	10800	10800		51.193	16.041	1	81582			48770	151	32244	32383	49378	49378					0.10583486654184071
VVSVILEQK	9	Unmodified	_VVSVILEQK_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.8135070800781	2	507.813325	1013.6121	-0.38091	-0.00019343	0.35761	0.0001816	-0.023301	-1.1832E-05	507.8135256262177	32.55	0.20312	32.55	32.476	32.679	0					9	5	2	0	0	0	0.013878	1	12388	12388		132.76	47.597	1	258470			48771	151	32244	32383	49379	49379					0.10583486654184071
VVSVILEQK	9	Unmodified	_VVSVILEQK_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.8128967285156	2	507.813325	1013.6121	-1.908	-0.00096891	1.5393	0.00078167	-0.3687	-0.00018723	507.8141620410531	32.35	0.18233	32.35	32.265	32.447	0					9	5	2	0	0	0	0.12834	1	11234	11234		72.879	23.343	1	90428			48772	151	32244	32383	49380	49380					0.10583486654184071
VVSVQSVQ	8	Unmodified	_VVSVQSVQ_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ZBTB20|p.P692Cfs*33|1|0.42|ENSG00000181722|chr3:114339156-114339157|GG/-|frameshift_variant;ZBTB20|p.P692Lfs*43|20|0.32|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	423.2398986816406	2	423.239993	844.465432	0.9793	0.00041448	-1.2507	-0.00052935	-0.27141	-0.00011487	423.23948662401835	16.314	0.31169	16.314	16.064	16.375	0					16	7	3	0	0	0	0.63077	1	4390	4390		44.117	4.864	1	230980			48773	6863	32245	32384	49381	49381					0.03697809489096926
VVSVVKKAG	9	Unmodified	_VVSVVKKAG_					0	0	0		BRCA2|p.T3085A|1|0.24|ENSG00000139618|chr13:32380142-32380142|A/G|missense_variant	BRCA2|p.T3085A|1|0.24|ENSG00000139618|chr13:32380142-32380142|A/G|missense_variant	BRCA2|p.T3085A|1|0.24|ENSG00000139618|chr13:32380142-32380142|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.7894592285156	2	443.789653	885.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.79	1	16.79	16.29	17.29	0								0	0	0	0.31623	1	4091	4091		31.955	5.1588	1				48774	317	32246	32385	49382	49382					0.11739252173845216
VVSYIFTL	8	Unmodified	_VVSYIFTL_					0	0	0			REV__SSTR2|p.F51S|1|0.11|ENSG00000180616|chr17:73169471-73169471|T/C|missense_variant	REV__SSTR2|p.F51S|1|0.11|ENSG00000180616|chr17:73169471-73169471|T/C|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.26861572265625	2	471.270761	940.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.967	1	34.967	34.467	35.467	0								0	0	0	1.7419	1	12419	12419		25.45	2.4077	1		+		48775	21606	32247	32386	49383	49383					0.0543274118839463
VVTDAFLAVA	10	Unmodified	_VVTDAFLAVA_					0	0	0		nc|ENSG00000176720|Q9UMX3-2|BOK;ENSG00000176720|ENST00000318407|BOK	nc|ENSG00000176720|Q9UMX3-2|BOK	nc|ENSG00000176720|Q9UMX3-2|BOK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.2857360839844	2	503.2844	1004.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.69	1	34.69	34.19	35.19	0								0	0	0	0.28441	1	12945	12945		53.351	5.6941	1				48776	6621	32248	32387	49384	49384					0.052152247287381215
VVTDIGVSSIG	11	Unmodified	_VVTDIGVSSIG_					0	0	0		RRH|p.A68V|1|0.32|ENSG00000180245|chr4:109833235-109833235|C/T|missense_variant	RRH|p.A68V|1|0.32|ENSG00000180245|chr4:109833235-109833235|C/T|missense_variant	RRH|p.A68V|1|0.32|ENSG00000180245|chr4:109833235-109833235|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7910766601562	2	523.790047	1045.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.579	1	17.579	17.079	18.079	0								0	0	0	0.39048	1	4432	4432		39.253	4.0521	1				48777	22361	32249	32388	49385	49385					0.04458002032242803
VVTDSMLIK	9	Unmodified	_VVTDSMLIK_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.2857666015625	2	503.286085	1004.55762	0.073781	3.7133E-05	-0.37087	-0.00018665	-0.29709	-0.00014952	503.2858969737836	34.662	0.19741	34.662	34.585	34.783	0					9	5	2	0	0	0	0.4966	1	13388	13388		32.812	4.9302	1	195340			48778	2631	32250	32389	49386	49386					0.055521515111195185
VVTEAIGQVT	10	Unmodified	_VVTEAIGQVT_					0	0	0			REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.78485107421875	2	508.784764	1015.55498	-0.10194	-5.1867E-05	-0.12045	-6.1284E-05	-0.2224	-0.00011315	508.78480577978274	32.343	0.26751	32.343	32.227	32.494	0					17	11	2	0	0	0	0.38179	1	10452	10452		58.246	13.869	1	331080	+		48779	21948	32251	32390	49387	49387					0.04782019377796587
VVTEAIGQVT	10	Unmodified	_VVTEAIGQVT_					0	0	0			REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	508.78497314453125	2	508.784764	1015.55498	-0.021607	-1.0994E-05	-0.3076	-0.0001565	-0.32921	-0.0001675	508.7849258601691	32.617	0.41698	32.617	32.369	32.786	0					24	10	4	0	0	0	0.20981	1	11978	11978		78.264	7.8652	1	1254600	+		48780	21948	32251	32390	49388	49388					0.04782019377796587
VVTEAIGQVT	10	Unmodified	_VVTEAIGQVT_					0	0	0			REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.78509521484375	2	508.784764	1015.55498	-1.8765	-0.00095473	2.8364	0.0014431	0.95989	0.00048838	508.7864320124382	32.383	0.18233	32.383	32.265	32.447	0					11	5	3	0	0	0	0.44292	1	11262	11262		51.528	2.0862	1	217640	+		48781	21948	32251	32390	49389	49389					0.04782019377796587
VVTEAIGQVT	10	Unmodified	_VVTEAIGQVT_					0	0	0			REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.7848205566406	2	508.784764	1015.55498	2.9878	0.0015201	-3.01	-0.0015314	-0.022186	-1.1288E-05	508.783394064935	32.548	0.31905	32.548	32.338	32.657	0					13	6	3	0	0	0	0.3337	1	12293	12293		63.534	3.2399	1	1613500	+		48782	21948	32251	32390	49390	49390					0.04782019377796587
VVTEHLINK	9	Unmodified	_VVTEHLINK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	526.8082885742188	2	526.808574	1051.60259	0.60337	0.00031786	-0.24918	-0.00013127	0.35419	0.00018659	526.8083333962994	23.143	0.1445	23.143	23.077	23.221	0					7	4	2	0	0	0	0.017421	1	6641	6641		122.18	70.983	1	259330			48783	1172	32252	32391	49391	49391					0.07885718368675043
VVTEHLINK	9	Unmodified	_VVTEHLINK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.8087768554688	2	526.808574	1051.60259	0.10245	5.3972E-05	0.28323	0.00014921	0.38568	0.00020318	526.8087732567748	23.482	0.17937	23.482	23.386	23.565	0					12	4	4	0	0	0	0.0063888	1	7770	7770		148.99	82.558	1	1636000			48784	1172	32252	32391	49392	49392					0.07885718368675043
VVTEHLINK	9	Unmodified	_VVTEHLINK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.8087158203125	2	526.808574	1051.60259	0.38857	0.0002047	0.2655	0.00013987	0.65407	0.00034457	526.8085446829479	23.184	0.19183	23.184	23.12	23.311	0					13	6	3	0	0	0	0.012936	1	6933	6933		131.03	45.871	1	686410			48785	1172	32252	32391	49393	49393					0.07885718368675043
VVTEHLINK	9	Unmodified	_VVTEHLINK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.8087768554688	2	526.808574	1051.60259	1.7609	0.00092767	-0.021528	-1.1341E-05	1.7394	0.00091633	526.8086564690926	23.404	0.4669	23.404	23.295	23.762	0					26	9	4	0	0	0	0.021015	1	8049	8049		115.49	60.718	1	4919500			48786	1172	32252	32391	49394	49394					0.07885718368675043
VVTEHLINK	9	Unmodified	_VVTEHLINK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.8082275390625	2	526.808574	1051.60259	-1.2122	-0.00063857	1.8835	0.00099222	0.6713	0.00035365	526.8094500466315	23.244	0.18913	23.244	23.152	23.341	0					10	4	3	0	0	0	0.0055674	1	7050	7050		153.04	78.781	1	879290			48787	1172	32252	32391	49395	49395					0.07885718368675043
VVTEHLINK	9	Unmodified	_VVTEHLINK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.808837890625	2	526.808574	1051.60259	3.4673	0.0018266	-1.3555	-0.00071407	2.1118	0.0011125	526.808056860132	23.361	0.51123	23.361	23.252	23.763	0					22	10	4	0	0	0	0.00022968	1	7920	7920		190.52	91.888	1	4135800			48788	1172	32252	32391	49396	49396					0.07885718368675043
VVTEHLINK	9	Unmodified	_VVTEHLINK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.5413818359375	3	351.541475	1051.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.386	1	23.386	22.886	23.886	0								0	0	0	0.10319	1	7922	7922		70.816	9.8443	1				48789	1172	32252	32391	49397	49397					0.07885718368675043
VVTEPTVYF	9	Unmodified	_VVTEPTVYF_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7750244140625	2	527.776408	1053.53826	2.1559	0.0011378	-1.9622	-0.0010356	0.1937	0.00010223	527.7755808688049	19.734	0.37244	19.734	19.616	19.988	0					19	8	4	0	0	0	0.35045	1	6011	6011		45.952	10.334	1	294450	+	+	48790	12620	32253	32392	49398	49398					0.013635184918257437
VVTETLKKH	9	Unmodified	_VVTETLKKH_					0	0	0		ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.775146484375	2	527.816399	1053.61824	1.2483	0.00065886	-0.70608	-0.00037268	0.54219	0.00028618	527.8160547319836	19.497	0.09861	19.497	19.45	19.548	0					4	2	2	0	0	0	0.4966	1	5300	5300		32.812	3.6629	1	35110			48791	6349	32254	32393	49399	49399					0.09358004885712035
VVTEVGMLKP	10	Unmodified	_VVTEVGMLKP_					0	0	0			REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10	REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.8092041015625	2	536.807185	1071.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.411	1	17.411	16.911	17.911	0								0	0	0	0.4162	1	5166	5166		25.574	4.6271	1		+		48792	15197	32255	32394	49400	49400					0.06688126919493698
VVTGRKLLQ	9	Unmodified	_VVTGRKLLQ_					0	0	0		CON__Q28065	CON__Q28065	CON__Q28065	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.3265075683594	2	507.326934	1012.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.336	1	28.336	27.836	28.836	0								0	0	0	0.3119	1	8841	8841		32.812	0.85756	1			+	48793	649	32256	32395	49401	49401					0.1335001498522388
VVTGVSVAF	9	Unmodified	_VVTGVSVAF_					0	0	0		nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.75262451171875	2	439.752736	877.490919	0.60262	0.000265	-1.0844	-0.00047688	-0.48181	-0.00021188	439.75224310534827	43.875	0.30889	43.875	43.778	44.086	0					24	15	3	0	0	0	0.16524	1	17123	17123		65.803	15.779	1	281710			48794	2373	32257	32396	49402	49402					0.047272840115169856
VVTGVSVAF	9	Unmodified	_VVTGVSVAF_					0	0	0		nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.7526550292969	2	439.752736	877.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.882	1	43.882	43.382	44.382	0								0	0	0	0.15865	1	17131	17131		57.811	11.859	1				48795	2373	32257	32396	49403	49403					0.047272840115169856
VVTLCHLK	8	Unmodified	_VVTLCHLK_					0	0	0			REV__DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	REV__DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	456.7715148925781	2	456.770406	911.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.799	1	49.799	49.299	50.299	0								0	0	0	1.7419	1	16378	16378		13.775	0	1		+		48796	12691	32258	32397	49404	49404					0.06695623267683004
VVTMLKEELR	10	Unmodified	_VVTMLKEELR_					0	0	0			REV__PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant	REV__PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	609.3519287109375	2	609.349748	1216.68494	2.9194	0.001779	0.45804	0.00027911	3.3775	0.0020581	609.3500919546419	46.466	0.31289	46.466	46.346	46.659	0					27	14	3	0	0	0	0.56931	1	18581	18581		37.812	0.30334	1	181600	+		48797	15433	32259	32398	49405	49405					0.08526872385277784
VVTNVEKE	8	Unmodified	_VVTNVEKE_					0	0	0		PDZD8|p.K969Tfs*12|1|0.27|ENSG00000165650|chr10:117283826-117283827|TT/-|frameshift_variant;PDZD8|p.E1125Dfs*4|1|0.02|ENSG00000165650|chr10:117283358-117283359|-/A|frameshift_variant;ENSG00000165650|ENST00000334464|PDZD8	PDZD8|p.K969Tfs*12|1|0.27|ENSG00000165650|chr10:117283826-117283827|TT/-|frameshift_variant	PDZD8|p.K969Tfs*12|1|0.27|ENSG00000165650|chr10:117283826-117283827|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2492370605469	2	459.250557	916.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.788	1	22.788	22.288	23.288	0								0	0	0	1.7419	1	6758	6758		40.778	1.5253	1				48798	5816	32260	32399	49406	49406					0.024977747979505693
VVTQAGHKK	9	Unmodified	_VVTQAGHKK_					0	0	0		ENST00000473880.5_1_7:102109277-102110330:+|nuORF;LRWD1|p.L446Cfs*61|1|0.2|ENSG00000161036|chr7:102469772-102469772|C/-|frameshift_variant;ENSG00000161036|ENST00000292616|LRWD1;LRWD1|p.V387Sfs*120|1|0.37|ENSG00000161036|chr7:102468990-102468990|G/-|frameshift_variant	ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENST00000473880.5_1_7:102109277-102110330:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.2878112792969	2	484.287808	966.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.269	1	11.269	10.769	11.769	0								0	0	0	0.27025	1	2268	2268		40.778	7.2626	1				48799	5401	32261	32400	49407	49407					0.07644582399996125
VVTTLVLISY	10	Unmodified	_VVTTLVLISY_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000546490.1_1_12:102091639-102108044:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	369.8924865722656	3	369.893514	1106.65871	-2.0903	-0.00077319	-0.72095	-0.00026668	-2.8112	-0.0010399	369.89326666139686	18.144	0.29383	18.144	17.941	18.235	0					10	6	2	0	0	0	0.69544	1	4662	4662		22.58	22.58	1	519450			48800	2682	32262	32401	49408	49408					0.10964926485485194
VVTVETDHPLL	11	Unmodified	_VVTVETDHPLL_					0	0	0		ENST00000378098.8_1_7:144150640-144304024:-|nuORF;ENSG00000196511|ENST00000360057|TPK1	ENST00000378098.8_1_7:144150640-144304024:-|nuORF	ENST00000378098.8_1_7:144150640-144304024:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	408.22723388671875	3	408.227444	1221.6605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.684	1	28.684	28.184	29.184	0								0	0	0	0.45344	1	9271	9271		25.126	1.6033	1				48801	7373	32263	32402	49409	49409					0.058539355034326945
VVTVQSAP	8	Unmodified	_VVTVQSAP_					0	0	0			REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF	REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	400.72930908203125	2	400.729261	799.443968	0.46877	0.00018785	-0.72434	-0.00029027	-0.25557	-0.00010242	400.7290533781046	40.495	0.19789	40.495	40.392	40.59	0					7	4	2	0	0	0	0.61938	1	16096	16096		45.952	0	1	151020	+		48802	18535	32264	32403	49410	49410					0.036224244603772604
VVTVSDVQELM	11	Unmodified	_VVTVSDVQELM_					0	0	0		nc|ENSG00000256950|O00233-3|PSMD9;nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9	nc|ENSG00000256950|O00233-3|PSMD9	nc|ENSG00000256950|O00233-3|PSMD9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.3147583007812	2	610.315571	1218.61659	-0.72549	-0.00044278	-0.63495	-0.00038752	-1.3604	-0.0008303	610.3151182329751	25.37	0.40311	25.37	25.181	25.584	0					24	9	3	0	0	0	0.71641	1	8646	8646		26.063	26.063	1	679650			48803	2644	32265	32404	49411	49411					0.01602583014778247
VVVAAIIGSI	10	Unmodified	_VVVAAIIGSI_					0	0	0			REV__nc|ENSG00000154721|P57087-3|JAM2	REV__nc|ENSG00000154721|P57087-3|JAM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.30462646484375	2	471.305136	940.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.966	1	41.966	41.466	42.466	0								0	0	0	0.40002	1	13881	13881		30.504	0	1		+		48804	21070	32266	32405	49412	49412					0.12304405488100656
VVVAEPLR	8	Unmodified	_VVVAEPLR_					0	0	0			REV__ENST00000291416.9_1_1:33611549-33612008:-|nuORF	REV__ENST00000291416.9_1_1:33611549-33612008:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	441.7745056152344	2	441.774003	881.533452	0.57086	0.00025219	-1.0058	-0.00044433	-0.43493	-0.00019214	441.77354177491173	32.374	0.69504	32.374	31.86	32.555	0					39	17	3	0	0	0	0.61938	1	11953	11953		45.952	12.436	1	487580	+		48805	18159	32267	32406	49413	49413					0.08794679139759864
VVVASTVQK	9	Unmodified	_VVVASTVQK_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.7848815917969	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.833	1	20.833	20.333	21.333	0								0	0	0	0.14033	1	5885	5885		62.107	8.756	1				48806	3021	32268	32407	49414	49414					0.08698644448622872
VVVASTVQK	9	Unmodified	_VVVASTVQK_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.78411865234375	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.907	1	20.907	20.407	21.407	0								0	0	0	0.2591	1	5967	5967		42.396	5.237	1				48807	3021	32268	32407	49415	49415					0.08698644448622872
VVVAVGLLGG	10	Unmodified	_VVVAVGLLGG_					0	0	0			REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	442.28387451171875	2	442.284203	882.553853	0.27844	0.00012315	-0.36499	-0.00016143	-0.086545	-3.8278E-05	442.2840747510976	33.341	0.57743	33.341	33.09	33.667	0					50	22	3	0	0	0	0.50739	1	10907	10907		44.531	2.1349	1	1683300	+		48808	18133	32269	32408	49416	49416					0.10787849799578453
VVVAVGLLGG	10	Unmodified	_VVVAVGLLGG_					0	0	0			REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.2892761230469	2	442.284203	882.553853	-0.27473	-0.00012151	0.96813	0.00042819	0.6934	0.00030668	442.28466609890194	33.582	0.75839	33.582	33.269	34.028	0					49	18	4	0	0	0	0.21242	1	12998	12998		77.944	0	1	1776200	+		48809	18133	32269	32408	49417	49417					0.10787849799578453
VVVAVGLLGG	10	Unmodified	_VVVAVGLLGG_					0	0	0			REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	442.2892761230469	2	442.284203	882.553853	0.39626	0.00017526	-0.5133	-0.00022702	-0.11703	-5.1762E-05	442.2839539382612	33.368	0.56803	33.368	33.1	33.668	0					44	16	4	0	0	0	0.3122	1	11827	11827		65.897	11.133	1	1566700	+		48810	18133	32269	32408	49418	49418					0.10787849799578453
VVVAVGLLGG	10	Unmodified	_VVVAVGLLGG_					0	0	0			REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2887878417969	2	442.284203	882.553853	-0.51371	-0.00022721	0.28171	0.00012459	-0.232	-0.00010261	442.2843226241258	33.558	0.9669	33.558	33.151	34.118	0					63	20	5	0	0	0	0.3122	1	12903	12903		65.897	0	1	11101000	+		48811	18133	32269	32408	49419	49419					0.10787849799578453
VVVAVGRAL	9	Unmodified	_VVVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2900695800781	2	442.28982	882.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.649	1	33.649	33.149	34.149	0								0	0	0	0.026532	1	11307	11307		97.473	39.661	1				48812	6043	32270	32409	49420	49420					0.11910671893701874
VVVAVGRAL	9	Unmodified	_VVVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.28961181640625	2	442.28982	882.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.848	1	33.848	33.348	34.348	0								0	0	0	0.0093926	1	12991	12991		110.34	41.853	1				48813	6043	32270	32409	49421	49421					0.11910671893701874
VVVAVGRAL	9	Unmodified	_VVVAVGRAL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.2891540527344	2	442.28982	882.565087	0.7437	0.00032893	-2.1141	-0.00093505	-1.3704	-0.00060612	442.28858639482115	33.808	0.22431	33.808	33.732	33.957	0					12	5	3	0	0	0	0.0072873	1	12898	12898		148.21	59.563	1	889540			48814	6043	32270	32409	49422	49422					0.11910671893701874
VVVCCLIFLL	10	Unmodified	_VVVCCLIFLL_					0	0	0		ENST00000463593.6_1_9:95060120-95060712:-|nuORF	ENST00000463593.6_1_9:95060120-95060712:-|nuORF	ENST00000463593.6_1_9:95060120-95060712:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	374.5551452636719	3	374.553558	1120.63885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.255	1	27.255	26.755	27.755	0								0	0	0	0.39665	1	9499	9499		31.53	3.6476	1				48815	9760	32271	32410	49423	49423					0.08335135949528194
VVVDDGANTL	10	Unmodified	_VVVDDGANTL_					0	0	0			REV__ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	REV__ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.75738525390625	2	501.758746	1001.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.255	1	32.255	31.755	32.755	0								0	0	0	0.28704	1	11198	11198		52.937	0.63753	1		+		48816	13479	32272	32411	49424	49424					0.0022485596406340846
VVVDEAIQK	9	Unmodified	_VVVDEAIQK_					0	0	0		nc|ENSG00000139631|Q9Y600-2|CSAD;ENSG00000139631|ENST00000444623|CSAD;nc|ENSG00000139631|Q9Y600-3|CSAD	nc|ENSG00000139631|Q9Y600-2|CSAD	nc|ENSG00000139631|Q9Y600-2|CSAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.7872009277344	2	500.787307	999.560061	0.017817	8.9223E-06	-0.12384	-6.2018E-05	-0.10602	-5.3095E-05	500.7872277632465	26.786	0.16798	26.786	26.727	26.895	0					6	3	2	0	0	0	0.037924	1	9639	9639		101.25	23.935	1	252190			48817	4339	32273	32412	49425	49425					0.06026323240428155
VVVDEAIQK	9	Unmodified	_VVVDEAIQK_					0	0	0		nc|ENSG00000139631|Q9Y600-2|CSAD;ENSG00000139631|ENST00000444623|CSAD;nc|ENSG00000139631|Q9Y600-3|CSAD	nc|ENSG00000139631|Q9Y600-2|CSAD	nc|ENSG00000139631|Q9Y600-2|CSAD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.7878723144531	2	500.787307	999.560061	-0.62925	-0.00031512	2.0289	0.001016	1.3996	0.0007009	500.788317464419	26.764	0.21457	26.764	26.654	26.868	0					10	4	3	0	0	0	0.33044	1	9509	9509		47.657	10.498	1	356880			48818	4339	32273	32412	49426	49426					0.06026323240428155
VVVDKTGP	8	Unmodified	_VVVDKTGP_					0	0	0			REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	407.737060546875	2	407.737086	813.459619	-1.397	-0.00056961	1.0854	0.00044256	-0.3116	-0.00012705	407.737448543331	26.811	0.24562	26.811	26.629	26.875	0					12	9	2	0	0	0	0.61938	1	8472	8472		45.952	0	1	82142	+		48819	13106	32274	32413	49427	49427					0.04542710977443676
VVVDPIQSVK	10	Unmodified	_VVVDPIQSVK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.3243408203125	2	542.324057	1082.63356	1.1271	0.00061124	-0.51031	-0.00027675	0.61677	0.00033449	542.3238839618899	33.923	0.21542	33.923	33.823	34.038	0					19	8	3	0	0	0	0.4287	1	11049	11049		53.089	17.937	1	111630			48820	2891	32275	32414	49428	49428					0.0955487168291711
VVVDPIQSVK	10	Unmodified	_VVVDPIQSVK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.3240356445312	2	542.324057	1082.63356	0.30945	0.00016782	0.59579	0.00032311	0.90523	0.00049093	542.3243649377812	34.213	0.42529	34.213	33.987	34.413	0					25	11	3	0	0	0	0.30252	1	12696	12696		66.962	10.528	1	787870			48821	2891	32275	32414	49429	49429					0.0955487168291711
VVVDPIQSVK	10	Unmodified	_VVVDPIQSVK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.3245239257812	2	542.324057	1082.63356	1.0634	0.00057672	-0.24658	-0.00013373	0.81685	0.000443	542.3238512229167	33.988	0.36749	33.988	33.773	34.141	0					24	10	3	0	0	0	0.58189	1	11938	11938		36.447	5.9431	1	670540			48822	2891	32275	32414	49430	49430					0.0955487168291711
VVVDRKDLG	9	Unmodified	_VVVDRKDLG_					0	0	0		ENST00000519973.5_1_8:23429536-23429629:+|nuORF	ENST00000519973.5_1_8:23429536-23429629:+|nuORF	ENST00000519973.5_1_8:23429536-23429629:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.7877197265625	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.551	1	26.551	26.051	27.051	0								0	0	0	0.3368	1	8084	8084		27.882	1.1893	1				48823	10294	32276	32415	49431	49431					0.07149145334574314
VVVGAVGVGK	10	Unmodified	_VVVGAVGVGK_					0	0	0		NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant;KRAS|p.G12V|32|0.43|ENSG00000133703|chr12:25245350-25245350|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	442.7816467285156	2	442.781828	883.549102	0.57736	0.00025565	-1.1186	-0.00049531	-0.54128	-0.00023967	442.78131205819943	27.382	0.21931	27.382	27.293	27.513	0					9	5	2	0	0	0	0.043105	1	9571	9571		111.65	42.021	1	267510			48824	11264	32277	32416	49432	49432					0.10266965656808225
VVVGAVGVGK	10	Unmodified	_VVVGAVGVGK_					0	0	0		NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant;KRAS|p.G12V|32|0.43|ENSG00000133703|chr12:25245350-25245350|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	442.78131103515625	2	442.781828	883.549102	-0.26235	-0.00011616	-0.42795	-0.00018949	-0.6903	-0.00030565	442.78152193357454	27.381	0.2191	27.381	27.27	27.49	0					6	4	2	0	0	0	0.26673	1	9925	9925		71.296	21.271	1	148510			48825	11264	32277	32416	49433	49433					0.10266965656808225
VVVGAVGVGK	10	Unmodified	_VVVGAVGVGK_					0	0	0		NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant;KRAS|p.G12V|32|0.43|ENSG00000133703|chr12:25245350-25245350|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	NRAS|p.G12V|1|0.52|ENSG00000213281|chr1:114716126-114716126|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	442.7815246582031	2	442.781828	883.549102	-0.50646	-0.00022425	-0.10244	-4.5359E-05	-0.6089	-0.00026961	442.78176387201535	27.365	0.22045	27.365	27.255	27.476	0					6	4	2	0	0	0	0.043105	1	9773	9773		111.65	56.872	1	205750			48826	11264	32277	32416	49434	49434					0.10266965656808225
VVVGGGGVGK	10	Unmodified	_VVVGGGGVGK_					0	0	0		ENSG00000133818|ENST00000256196|RRAS2;nc|ENSG00000133818|P62070-4|RRAS2;ENSG00000126458|ENST00000246792|RRAS	ENSG00000133818|ENST00000256196|RRAS2	ENSG00000133818|ENST00000256196|RRAS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.75018310546875	2	414.750527	827.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.796	1	20.796	20.296	21.296	0								0	0	0	0.33119	1	6510	6510		45.952	13.997	1				48827	3475	32278	32417	49435	49435					0.06585819588622144
VVVGGGGVGK	10	Unmodified	_VVVGGGGVGK_					0	0	0		ENSG00000133818|ENST00000256196|RRAS2;nc|ENSG00000133818|P62070-4|RRAS2;ENSG00000126458|ENST00000246792|RRAS	ENSG00000133818|ENST00000256196|RRAS2	ENSG00000133818|ENST00000256196|RRAS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	414.7508239746094	2	414.750527	827.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.786	1	20.786	20.286	21.286	0								0	0	0	0.24422	1	6506	6506		58.782	3.2778	1				48828	3475	32278	32417	49436	49436					0.06585819588622144
VVVGGGGVGK	10	Unmodified	_VVVGGGGVGK_					0	0	0		ENSG00000133818|ENST00000256196|RRAS2;nc|ENSG00000133818|P62070-4|RRAS2;ENSG00000126458|ENST00000246792|RRAS	ENSG00000133818|ENST00000256196|RRAS2	ENSG00000133818|ENST00000256196|RRAS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	414.7506103515625	2	414.750527	827.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.497	1	20.497	19.997	20.997	0								0	0	0	0.33119	1	5735	5735		45.952	12.436	1				48829	3475	32278	32417	49437	49437					0.06585819588622144
VVVGGGGVGK	10	Unmodified	_VVVGGGGVGK_					0	0	0		ENSG00000133818|ENST00000256196|RRAS2;nc|ENSG00000133818|P62070-4|RRAS2;ENSG00000126458|ENST00000246792|RRAS	ENSG00000133818|ENST00000256196|RRAS2	ENSG00000133818|ENST00000256196|RRAS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	414.7502746582031	2	414.750527	827.486502	0.063687	2.6414E-05	-0.63773	-0.0002645	-0.57405	-0.00023809	414.75036415539114	20.687	0.11777	20.687	20.629	20.747	0					4	2	2	0	0	0	0.42631	1	6753	6753		53.351	9.2347	1	279440			48830	3475	32278	32417	49438	49438					0.06585819588622144
VVVGGGGVGK	10	Unmodified	_VVVGGGGVGK_					0	0	0		ENSG00000133818|ENST00000256196|RRAS2;nc|ENSG00000133818|P62070-4|RRAS2;ENSG00000126458|ENST00000246792|RRAS	ENSG00000133818|ENST00000256196|RRAS2	ENSG00000133818|ENST00000256196|RRAS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.7505187988281	2	414.750527	827.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.678	1	20.678	20.178	21.178	0								0	0	0	0.073088	1	6607	6607		85.359	29.855	1				48831	3475	32278	32417	49439	49439					0.06585819588622144
VVVGVYRPPPK	11	Unmodified	_VVVGVYRPPPK_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	605.8689575195312	2	605.868966	1209.72338	0.43072	0.00026096	-0.26341	-0.00015959	0.16731	0.00010137	605.86867012516	25.51	0.26121	25.51	25.426	25.687	0					10	5	2	0	0	0	0.39337	1	9087	9087		51.193	17.271	1	127310			48832	2336	32279	32418	49440	49440					0.12690546082103538
VVVKIKFDT	9	Unmodified	_VVVKIKFDT_					0	0	0			REV__ENST00000478946.1_1_2:74071889-74072120:+|nuORF	REV__ENST00000478946.1_1_2:74071889-74072120:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	350.2181396484375	3	350.21822	1047.63283	-0.70266	-0.00024609	0.13233	4.6343E-05	-0.57034	-0.00019974	350.2183756037969	31.788	0.21045	31.788	31.723	31.933	0					11	8	2	0	0	0	0.59802	1	10567	10567		22.58	1.7425	1	201750	+		48833	19570	32280	32419	49441	49441					0.11092077033845271
VVVLAGREAF	10	Unmodified	_VVVLAGREAF_					0	0	0			REV__ENST00000511186.5_1_5:118788168-118811542:+|nuORF	REV__ENST00000511186.5_1_5:118788168-118811542:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	354.209716796875	3	354.209836	1059.60768	-0.86176	-0.00030524	0.97261	0.00034451	0.11085	3.9265E-05	354.210131168764	30.592	0.21852	30.592	30.501	30.719	0					14	8	2	0	0	0	0.62235	1	10071	10071		31.53	1.2121	1	153480	+		48834	14721	32281	32420	49442	49442					0.0802602223127451
VVVLEGGALL	10	Unmodified	_VVVLEGGALL_					0	0	0			REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF	REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.302490234375	2	485.302593	968.590633	-0.091337	-4.4326E-05	-0.69254	-0.00033609	-0.78387	-0.00038042	485.30237580205784	36.555	0.23026	36.555	36.394	36.625	0					9	6	2	0	0	0	0.44469	1	14250	14250		51.335	14.176	1	71189	+		48835	19249	32282	32421	49443	49443					0.10508101625475774
VVVMRKLV	8	Unmodified	_VVVMRKLV_					0	0	0			REV__ENST00000452600.1_1_2:130987586-130988813:+|nuORF	REV__ENST00000452600.1_1_2:130987586-130988813:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	472.3104248046875	2	472.309698	942.604843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.07	1	21.07	20.57	21.57	0								0	0	0	1.7419	1	5990	5990		21.702	7.0382	1		+		48836	19321	32283	32422	49444	49444					0.13124475572772099
VVVNKKKD	8	Unmodified	_VVVNKKKD_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	465.2923278808594	2	465.292559	928.570566	-0.68129	-0.000317	0.09669	4.4989E-05	-0.5846	-0.00027201	465.29260761465275	25.328	0.14827	25.328	25.226	25.374	0					8	3	3	0	0	0	0.59411	1	8651	8651		50.025	2.3672	1	282950	+		48837	17429	32284	32423	49445	49445					0.10342350685505153
VVVNVKQG	8	Unmodified	_VVVNVKQG_					0	0	0			REV__nc|ENSG00000169551|Q8WUE5-2|CT55	REV__nc|ENSG00000169551|Q8WUE5-2|CT55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.7581481933594	2	421.758352	841.502152	-0.33041	-0.00013935	-0.47074	-0.00019854	-0.80115	-0.00033789	421.7582276620411	22.897	0.16727	22.897	22.789	22.956	0					5	3	2	0	0	0	0.64096	1	7698	7698		42.474	3.6683	1	239390	+		48838	16318	32285	32424	49446	49446					0.07506106105665822
VVVPANTT	8	Unmodified	_VVVPANTT_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	400.7293395996094	2	400.729261	799.443968	0.93843	0.00037605	-0.92191	-0.00036944	0.016514	6.6175E-06	400.7288643451882	40.567	0.22966	40.567	40.477	40.707	0					11	9	2	0	0	0	0.65276	1	15471	15471		40.573	0	1	110980			48839	7638	32286	32425	49447	49447					0.03622424460365892
VVVPKAGK	8	Unmodified	_VVVPKAGK_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.26580810546875	2	399.265813	796.517074	-0.34132	-0.00013628	0.34819	0.00013902	0.0068639	2.7405E-06	399.26594148683523	12.147	0.13046	12.147	12.053	12.184	0					7	4	2	0	0	0	0.70055	1	2485	2485		33.516	3.674	1	185730	+		48840	15972	32287	32426	49448	49448					0.11067597973658394
VVVPPLPGK	9	Unmodified	_VVVPPLPGK_					0	0	0		nc|ENSG00000112335|O60493-2|SNX3;nc|ENSG00000112335|O60493-4|SNX3;ENSG00000112335|ENST00000230085|SNX3	nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.29437255859375	2	453.294571	904.574589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.721	1	33.721	33.221	34.221	0								0	0	0	0.27166	1	12847	12847		40.573	3.4135	1				48841	2737	32288	32427	49449	49449					0.11848440179232966
VVVPPVGAK	9	Unmodified	_VVVPPVGAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.2786560058594	2	433.278921	864.543289	-0.26139	-0.00011325	-0.32521	-0.00014091	-0.5866	-0.00025416	433.2787540935909	26.384	0.53917	26.384	26.28	26.819	0					28	18	3	0	0	0	0.35045	1	8005	8005		45.952	8.9235	1	255680			48842	3441	32289	32428	49450	49450					0.10559867145127555
VVVPPVGAK	9	Unmodified	_VVVPPVGAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.2786865234375	2	433.278921	864.543289	-0.45487	-0.00019709	0.16476	7.1387E-05	-0.29011	-0.0001257	433.2789411735079	26.666	1.7678	26.666	26.523	28.291	0					70	42	3	0	0	0	0.32741	1	9213	9213		47.916	10.887	1	1460400			48843	3441	32289	32428	49451	49451					0.10559867145127555
VVVTADLR	8	Unmodified	_VVVTADLR_					0	0	0		ETFB|p.A179V|1|0.15|ENSG00000105379|chr19:51346961-51346961|G/A|missense_variant	ETFB|p.A179V|1|0.15|ENSG00000105379|chr19:51346961-51346961|G/A|missense_variant	ETFB|p.A179V|1|0.15|ENSG00000105379|chr19:51346961-51346961|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	436.7640075683594	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.214	1	24.214	23.714	24.714	0								0	0	0	1.7419	1	7381	7381		30.504	0	1				48844	11120	32290	32429	49452	49452					0.07182088760077932
VVVVFFVPCI	10	Unmodified	_VVVVFFVPCI_					0	0	0		OR4C12|p.L247V|1|0.19|ENSG00000221954|chr11:49981763-49981763|A/C|missense_variant	OR4C12|p.L247V|1|0.19|ENSG00000221954|chr11:49981763-49981763|A/C|missense_variant	OR4C12|p.L247V|1|0.19|ENSG00000221954|chr11:49981763-49981763|A/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	561.3272094726562	2	561.325014	1120.63547	3.4698	0.0019477	0.86674	0.00048652	4.3365	0.0024342	561.3254323176452	33.838	0.36908	33.838	33.716	34.085	0					14	8	3	0	0	0	0.55603	1	12917	12917		44.531	17.735	1	214970			48845	11879	32291	32430	49453	49453					0.07998209167158166
VVVVHATS	8	Unmodified	_VVVVHATS_					0	0	0			REV__TAS1R2|p.R270H|1|0.26|ENSG00000179002|chr1:18854661-18854661|C/T|missense_variant	REV__TAS1R2|p.R270H|1|0.26|ENSG00000179002|chr1:18854661-18854661|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	406.2369689941406	2	406.237253	810.459953	0.62104	0.00025229	-1.3513	-0.00054896	-0.73029	-0.00029667	406.2368551886295	19.302	0.47361	19.302	18.939	19.413	0					20	14	2	0	0	0	0.79176	1	4918	4918		21.702	1.2205	1	43872	+		48846	21622	32292	32431	49454	49454					0.047141306972775965
VVVVNPQTK	9	Unmodified	_VVVVNPQTK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.2974853515625	2	492.297842	982.581131	-0.16697	-8.2201E-05	-0.072111	-3.55E-05	-0.23909	-0.0001177	492.29775958626834	22.574	0.23413	22.574	22.434	22.668	0					13	7	2	0	0	0	0.21263	1	6406	6406		60.118	12.461	1	93876			48847	6687	32293	32432	49455	49455					0.08914333339942004
VVVVNPQTK	9	Unmodified	_VVVVNPQTK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2976379394531	2	492.297842	982.581131	0.7918	0.0003898	-1.2505	-0.00061564	-0.45874	-0.00022583	492.2973859166225	22.873	0.45932	22.873	22.604	23.063	0					27	11	3	0	0	0	0.11898	1	7515	7515		75.043	29.071	1	534740			48848	6687	32293	32432	49456	49456					0.08914333339942004
VVVVNPQTK	9	Unmodified	_VVVVNPQTK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.2978515625	2	492.297842	982.581131	-1.2635	-0.00062203	0.075538	3.7187E-05	-1.188	-0.00058485	492.29837157794157	22.588	0.52898	22.588	22.2	22.729	0					22	16	2	0	0	0	0.16806	1	6685	6685		65.465	17.55	1	152950			48849	6687	32293	32432	49457	49457					0.08914333339942004
VVVVNPQTK	9	Unmodified	_VVVVNPQTK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2975158691406	2	492.297842	982.581131	0.83772	0.00041241	-3.3695	-0.0016588	-2.5318	-0.0012464	492.29726324196344	22.759	1.7586	22.759	22.121	23.88	0					66	35	3	0	0	0	0.095583	1	7642	7642		80.455	38.058	1	644440			48850	6687	32293	32432	49458	49458					0.08914333339942004
VVWILQVA	8	Unmodified	_VVWILQVA_					0	0	0			REV__ENSG00000149262|ENST00000534064|INTS4	REV__ENSG00000149262|ENST00000534064|INTS4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	464.2840270996094	2	464.286746	926.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.369	1	45.369	44.869	45.869	0								0	0	0	1.7419	1	16891	16891		57.453	13.336	1		+		48851	15409	32294	32433	49459	49459					0.09272153662175242
VVWKIPFP	8	Unmodified	_VVWKIPFP_					0	0	0			REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF	REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	329.2011413574219	3	329.200501	984.579674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.305	1	28.305	27.805	28.805	0								0	0	0	1.7419	1	9113	9113		19.36	4.4951	1		+		48852	20398	32295	32434	49460	49460					0.08676744041849815
VVWLCQHK	8	Unmodified	_VVWLCQHK_					0	0	0			REV__ENST00000393295.7_1_3:128879825-128879960:-|nuORF	REV__ENST00000393295.7_1_3:128879825-128879960:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.7745666503906	2	506.77348	1011.53241	2.9402	0.00149	-0.86816	-0.00043996	2.072	0.0010501	506.77299351449875	26.968	0.51626	26.968	26.722	27.238	0					33	10	4	0	0	0	0.67475	1	9588	9588		37.028	4.2161	1	546650	+		48853	18847	32296	32435	49461	49461					0.02710141499198926
VVWQCDGHR	9	Unmodified	_VVWQCDGHR_					0	0	0			REV__ENST00000301785.5_1_11:62482034-62482370:-|nuORF	REV__ENST00000301785.5_1_11:62482034-62482370:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	550.2606811523438	2	550.258725	1098.5029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.235	1	20.235	19.735	20.735	0								0	0	0	0.28996	1	5381	5381		37.159	8.0096	1		+		48854	18210	32297	32436	49462	49462					-0.042414225169295605
VVWWPQAL	8	Unmodified	_VVWWPQAL_					0	0	0		ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7756652832031	2	499.776545	997.538538	-2.1542	-0.0010766	0.87407	0.00043684	-1.2801	-0.00063979	499.7770655008665	24.337	1.0966	24.337	24.155	25.252	0					55	25	3	0	0	0	0.74117	1	7546	7546		28.254	28.254	1	405150			48855	10314	32298	32437	49463	49463					0.03966983002374036
VVYCIFSSR	9	Unmodified	_VVYCIFSSR_					0	0	0		ENST00000601419.5_1_19:48281997-48284145:+|nuORF	ENST00000601419.5_1_19:48281997-48284145:+|nuORF	ENST00000601419.5_1_19:48281997-48284145:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2796630859375	2	537.276052	1072.53755	2.1009	0.0011288	4.259	0.0022882	6.3599	0.003417	537.2781436480591	31.335	0.29412	31.335	31.169	31.463	0					18	7	3	0	0	0	0.24334	1	11388	11388		49.442	0	1	282250			48856	11035	32299	32438	49464	49464					0.004184005711522332
VVYEFSTTK	9	Unmodified	_VVYEFSTTK_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.2799072265625	2	537.279315	1072.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.087	1	31.087	30.587	31.587	0								0	0	0	0.30504	1	9964	9964		34.173	2.2177	1				48857	5663	32300	32439	49465	49465					0.010706170035064133
VVYEFSTTK	9	Unmodified	_VVYEFSTTK_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2798461914062	2	537.279315	1072.54408	1.3049	0.0007011	0.81694	0.00043892	2.1219	0.00114	537.27921559959	31.308	0.18516	31.308	31.228	31.414	0					6	4	2	0	0	0	0.25716	1	11807	11807		54.776	20.604	1	89623			48858	5663	32300	32439	49466	49466					0.010706170035064133
VVYEFSTTK	9	Unmodified	_VVYEFSTTK_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	537.2792358398438	2	537.279315	1072.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.109	1	31.109	30.609	31.609	0								0	0	0	0.3693	1	10674	10674		19.997	0.6368	1				48859	5663	32300	32439	49467	49467					0.010706170035064133
VVYFVAMVY	9	Unmodified	_VVYFVAMVY_					0	0	0		ENSG00000118160|ENST00000236877|SLC8A2;SLC8A2|p.S220Pfs*12|6|0.28|ENSG00000118160|chr19:47465746-47465746|A/-|frameshift_variant;SLC8A2|p.A229Gfs*3|1|0.16|ENSG00000118160|chr19:47457584-47457584|G/-|frameshift_variant	ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.7850952148438	2	545.785721	1089.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.364	1	26.364	25.864	26.864	0								0	0	0	0.28056	1	8003	8003		39.021	5.5285	1				48860	3065	32301	32440	49468	49468					0.015693568620690712
VVYHHIRAG	9	Unmodified	_VVYHHIRAG_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	351.19775390625	3	351.198042	1050.5723	-0.83228	-0.0002923	-0.17282	-6.0695E-05	-1.0051	-0.00035299	351.1979695017659	18.903	0.17356	18.903	18.827	19	0					11	5	3	0	0	0	0.48389	1	5019	5019		34.173	3.6689	1	847060	+		48861	15602;22247	32302	32441	49469	49469					0.049034044941208776
VVYIQSSINK	10	Unmodified	_VVYIQSSINK_					0	0	0		ENST00000477091.5_1_21:35445925-35497723:+|nuORF	ENST00000477091.5_1_21:35445925-35497723:+|nuORF	ENST00000477091.5_1_21:35445925-35497723:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.8270874023438	2	575.826963	1149.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.744	1	29.744	29.244	30.244	0								0	0	0	0.34115	1	10046	10046		44.377	8.7589	1				48862	9917	32303	32442	49470	49470					0.07053970194556314
VVYKNDLF	8	Unmodified	_VVYKNDLF_					0	0	0			REV__ENSG00000135801|ENST00000258281|TAF5L	REV__ENSG00000135801|ENST00000258281|TAF5L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2749938964844	2	499.271293	996.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.852	1	43.852	43.352	44.352	0								0	0	0	1.7419	1	17566	17566		31.955	0	1		+		48863	14821	32304	32443	49471	49471					0.02962955557291025
VVYKYLTEK	9	Unmodified	_VVYKYLTEK_					0	0	0		ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENST00000533867.1_1_11:9304973-9309374:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	381.5534362792969	3	381.55338	1141.63831	0.62975	0.00024028	-0.43477	-0.00016589	0.19498	7.4395E-05	381.5532160875958	27.195	0.47379	27.195	26.985	27.459	0					14	9	2	0	0	0	0.35021	1	9717	9717		53.089	15.581	1	1178500			48864	5907	32305	32444	49472	49472					0.07315755825652559
VVYLYVTN	8	Unmodified	_VVYLYVTN_					0	0	0			REV__ENSG00000105852|ENST00000265627|PON3	REV__ENSG00000105852|ENST00000265627|PON3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	324.17999267578125	3	324.179654	969.517133	0.53463	0.00017332	-0.25312	-8.2055E-05	0.28152	9.1262E-05	324.179674469489	17.211	1.7956	17.211	17.007	18.803	0					107	43	3	0	0	0	0.79176	1	4954	4954		24.203	3.2558	1	1410500	+		48865	13799	32306	32445	49473	49473					0.03115553182988151
VVYPPPVDP	9	Unmodified	_VVYPPPVDP_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.7648010253906	2	491.765843	981.517133	-2.6845	-0.0013201	-1.4138	-0.00069527	-4.0983	-0.0020154	491.76527101991184	35.493	0.23969	35.493	35.404	35.644	0					20	9	3	0	0	0	0.39123	1	12641	12641		42.474	14.393	1	243710			48866	7478	32307	32446	49474	49474					0.025635531829948377
VVYQGGTSR	9	Unmodified	_VVYQGGTSR_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.753662109375	2	483.753798	965.493044	0.6113	0.00029572	-0.20154	-9.7498E-05	0.40976	0.00019822	483.7532107970671	18.437	0.1451	18.437	18.339	18.485	0					8	3	3	0	0	0	0.33044	1	5407	5407		47.657	10.498	1	251600			48867	3517	32308	32447	49475	49475					0.008917127493418775
VVYQGGTSR	9	Unmodified	_VVYQGGTSR_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.75341796875	2	483.753798	965.493044	0.87378	0.00042269	-1.5018	-0.00072652	-0.62805	-0.00030382	483.7530240339014	18.362	0.11658	18.362	18.305	18.421	0					4	2	2	0	0	0	0.33044	1	5498	5498		47.657	12.039	1	203960			48868	3517	32308	32447	49476	49476					0.008917127493418775
VVYQYWNTK	9	Unmodified	_VVYQYWNTK_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.8062744140625	2	600.806031	1199.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.411	1	35.411	34.911	35.911	0								0	0	0	0.058887	1	13720	13720		83.647	26.926	1				48869	908	32309	32448	49477	49477					0.00569414506026078
VVYSGLENIKK	11	Unmodified	_VVYSGLENIKK_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	417.24285888671875	3	417.243206	1248.70779	-1.399	-0.00058374	0.59747	0.00024929	-0.80157	-0.00033445	417.24339862143967	28.82	0.14601	28.82	28.769	28.915	0					7	5	2	0	0	0	0.6208	1	9326	9326		35.178	10.052	1	107000			48870	5052	32310	32449	49478	49478					0.09338214774402331
VVYSGLENIKK	11	Unmodified	_VVYSGLENIKK_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	625.3614501953125	2	625.36117	1248.70779	0.026904	1.6824E-05	0.10997	6.8772E-05	0.13687	8.5596E-05	625.3613926894824	29.045	0.20436	29.045	28.991	29.195	0					6	4	2	0	0	0	0.11546	1	10722	10722		86.882	44.017	1	271570			48871	5052	32310	32449	49479	49479					0.09338214774402331
VVYSLLHR	8	Unmodified	_VVYSLLHR_					0	0	0			REV__ENST00000348035.8_1_7:6442384-6442585:+|nuORF	REV__ENST00000348035.8_1_7:6442384-6442585:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7943115234375	2	493.792727	985.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.803	1	36.803	36.303	37.303	0								0	0	0	1.7419	1	14358	14358		53.351	12.779	1		+		48872	18489	32311	32450	49480	49480					0.07753770405383875
VVYSREPY	8	Unmodified	_VVYSREPY_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.757080078125	2	506.758549	1011.50255	0.81719	0.00041412	-0.72611	-0.00036796	0.091081	4.6156E-05	506.7580049512228	27.958	0.3146	27.958	27.782	28.096	0					25	11	3	0	0	0	0.32408	1	8665	8665		79.939	11.152	1	372970	+		48873	17256	32312	32451	49481	49481					-0.002745189651477631
VVYSREPY	8	Unmodified	_VVYSREPY_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7524108886719	2	506.758549	1011.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.212	1	28.212	27.712	28.712	0								0	0	0	1.7419	1	10312	10312		79.939	0.48821	1		+		48874	17256	32312	32451	49482	49482					-0.002745189651477631
VVYSREPY	8	Unmodified	_VVYSREPY_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.7582702636719	2	506.758549	1011.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.257	1	28.257	27.757	28.757	0								0	0	0	1.7419	1	10332	10332		68.485	2.6815	1		+		48875	17256	32312	32451	49483	49483					-0.002745189651477631
VVYSREPY	8	Unmodified	_VVYSREPY_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	506.7584533691406	2	506.758549	1011.50255	0.28636	0.00014512	-0.21363	-0.00010826	0.07273	3.6857E-05	506.75830411190464	28.05	0.16746	28.05	27.964	28.132	0					6	4	2	0	0	0	0.52345	1	9250	9250		57.811	8.3697	1	100900	+		48876	17256	32312	32451	49484	49484					-0.002745189651477631
VVYTIPAVLT	10	Unmodified	_VVYTIPAVLT_					0	0	0		nc|ENSG00000187824|Q6QAJ8-2|TMEM220;ENSG00000187824|ENST00000341871|TMEM220	nc|ENSG00000187824|Q6QAJ8-2|TMEM220	nc|ENSG00000187824|Q6QAJ8-2|TMEM220	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.3225708007812	2	538.323525	1074.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.686	1	23.686	23.186	24.186	0								0	0	0	0.32041	1	7269	7269		47.657	4.7931	1				48877	7221	32313	32452	49485	49485					0.09816657313990618
VVYTSEMALK	10	Unmodified	_VVYTSEMALK_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant;CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;CENPE|p.E170K|1|0.27|ENSG00000138778|chr4:103194654-103194654|C/T|missense_variant;CENPE|p.Q792Hfs*16|1|0.04|ENSG00000138778|chr4:103159235-103159236|-/TCATA|frameshift_variant	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	570.8025512695312	2	570.8021	1139.58965	0.20362	0.00011623	1.8624	0.0010631	2.066	0.0011793	570.8031203632565	33.407	0.16626	33.407	33.3	33.466	0					6	3	2	0	0	0	0.46128	1	12686	12686		49.536	20.366	1	85889			48878	4290	32314	32453	49486	49486					0.025435191942278834
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.3439331054688	2	594.342781	1186.67101	0.13039	7.7494E-05	0.61191	0.00036369	0.7423	0.00044118	594.3430160224988	28.32	0.10152	28.32	28.266	28.368	0					6	3	2	0	0	0	0.16075	1	8832	8832		82.75	52.433	1	51975			48879	5044;7071	32315	32454	49487	49487					0.08513962948518383
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	594.3430786132812	2	594.342781	1186.67101	0.25024	0.00014873	0.072409	4.3036E-05	0.32265	0.00019176	594.3427631901485	28.585	0.25558	28.585	28.474	28.73	0					15	6	4	0	0	0	0.0043426	1	10112	10112		134.77	80.043	1	551440			48880	5044;7071	32315	32454	49488	49488					0.08513962948518383
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	396.5643005371094	3	396.564279	1186.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.334	1	28.334	27.834	28.834	0								0	0	0	0.41137	1	9124	9124		27.047	3.5246	1				48881	5044;7071	32315	32454	49489	49489					0.08513962948518383
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.84375	2	594.342781	1186.67101	0.18796	0.00011171	-0.11551	-6.865E-05	0.072456	4.3064E-05	594.3430384968913	28.345	0.094572	28.345	28.282	28.377	0					6	3	2	0	0	0	0.21577	1	9121	9121		47.96	1.5027	1	99623			48882	5044;7071	32315	32454	49490	49490					0.08513962948518383
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	396.8984069824219	3	396.564279	1186.67101	0.62178	0.00024658	-0.096141	-3.8126E-05	0.52564	0.00020845	396.89846147007063	28.617	0.31279	28.617	28.465	28.778	0					18	6	4	0	0	0	0.62149	1	10495	10495		31.634	2.0835	1	950830			48883	5044;7071	32315	32454	49491	49491					0.08513962948518383
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	594.3429565429688	2	594.342781	1186.67101	0.027093	1.6103E-05	0.030012	1.7837E-05	0.057105	3.394E-05	594.342732434444	28.606	0.21278	28.606	28.499	28.712	0					11	4	3	0	0	0	0.0088982	1	10485	10485		126.24	82.592	1	482250			48884	5044;7071	32315	32454	49492	49492					0.08513962948518383
VVYVGGILTK	10	Unmodified	_VVYVGGILTK_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.8250732421875	2	524.823692	1047.63283	0.69144	0.00036288	-0.069599	-3.6527E-05	0.62184	0.00032636	524.8236600781007	38.317	0.28182	38.317	38.194	38.476	0					35	16	3	0	0	0	0.43008	1	12481	12481		52.937	23.787	1	504040			48885	6503	32316	32455	49493	49493					0.11092077033845271
VVYVGGILTK	10	Unmodified	_VVYVGGILTK_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.82373046875	2	524.823692	1047.63283	0.094651	4.9675E-05	0.33398	0.00017528	0.42863	0.00022496	524.8237908162454	38.62	0.43728	38.62	38.485	38.923	0					45	17	4	0	0	0	0.12763	1	14659	14659		90.601	47.737	1	2646800			48886	6503	32316	32455	49494	49494					0.11092077033845271
VVYVGGILTK	10	Unmodified	_VVYVGGILTK_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.824951171875	2	524.823692	1047.63283	0.58943	0.00030935	1.0802	0.00056692	1.6696	0.00087626	524.8241567998211	38.359	0.17745	38.359	38.283	38.46	0					15	9	2	0	0	0	0.52707	1	12932	12932		42.396	14.514	1	120380			48887	6503	32316	32455	49495	49495					0.11092077033845271
VVYVGGILTK	10	Unmodified	_VVYVGGILTK_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.8233642578125	2	524.823692	1047.63283	0.42472	0.0002229	-0.1166	-6.1197E-05	0.30812	0.00016171	524.8235409246773	38.377	0.29443	38.377	38.254	38.548	0					33	15	3	0	0	0	0.39566	1	12924	12924		56.721	22.549	1	588300			48888	6503	32316	32455	49496	49496					0.11092077033845271
VVYVGGILTK	10	Unmodified	_VVYVGGILTK_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8243408203125	2	524.823692	1047.63283	1.7787	0.00093348	-1.1953	-0.0006273	0.5834	0.00030618	524.8229942240115	38.598	0.26152	38.598	38.505	38.766	0					28	9	4	0	0	0	0.15878	2	15128	15128;15215		85.161	45.103	1	1027400			48889	6503	32316	32455	49497;49498	49497					0.11092077033845271
VVYVGGILTK	10	Unmodified	_VVYVGGILTK_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.8236694335938	2	524.823692	1047.63283	0.12082	6.3409E-05	0.47198	0.00024771	0.59281	0.00031112	524.8239347171316	38.594	0.42579	38.594	38.493	38.919	0					37	15	4	0	0	0	0.04084	1	15122	15122		112.41	62.969	1	2062100			48890	6503	32316	32455	49499	49499					0.11092077033845271
VWAAVPGKTF	10	Unmodified	_VWAAVPGKTF_					0	0	0		ENSG00000108518|ENST00000225655|PFN1;CON__P02584	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.3007202148438	2	538.300384	1074.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.728	1	39.728	39.228	40.228	0								0	0	0	0.362	1	15131	15131		44.377	10.862	1				48891	2532	32317	32456	49500	49500					0.051906372025541714
VWAAVPGKTF	10	Unmodified	_VWAAVPGKTF_					0	0	0		ENSG00000108518|ENST00000225655|PFN1;CON__P02584	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.3007202148438	2	538.300384	1074.58622	1.9054	0.0010257	1.7052	0.00091792	3.6106	0.0019436	538.3012215058496	39.859	0.66417	39.859	39.539	40.203	0					56	23	3	0	0	0	0.16075	1	15628	15628		82.75	43.944	1	1144900			48892	2532	32317	32456	49501	49501					0.051906372025541714
VWAAVPGKTF	10	Unmodified	_VWAAVPGKTF_					0	0	0		ENSG00000108518|ENST00000225655|PFN1;CON__P02584	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.30078125	2	538.300384	1074.58622	3.3698	0.0018139	-0.80666	-0.00043422	2.5631	0.0013797	538.2999213106393	39.822	0.63702	39.822	39.455	40.092	0					35	14	3	0	0	0	0.049666	1	15708	15708		98.629	40.818	1	1802000			48893	2532	32317	32456	49502	49502					0.051906372025541714
VWAGRVPM	8	Unmodified	_VWAGRVPM_					0	0	0			REV__ENST00000519604.5_1_20:61919974-61920067:+|nuORF	REV__ENST00000519604.5_1_20:61919974-61920067:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	458.2479553222656	2	458.247098	914.479642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.664	1	27.664	27.164	28.164	0								0	0	0	1.7419	1	10048	10048		60.294	12.378	1		+		48894	19939	32318	32457	49503	49503					0.018981834363898997
VWDQVFFW	8	Unmodified	_VWDQVFFW_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.7728881835938	2	563.77146	1125.52837	3.4706	0.0019566	-0.97909	-0.00055198	2.4915	0.0014046	563.7709349893664	30.603	0.55327	30.603	30.458	31.011	0					30	11	4	0	0	0	0.28158	1	11360	11360		88.643	11.796	1	3816200			48895	3517	32319	32458	49504	49504					-0.029376247228810826
VWELSVSY	8	Unmodified	_VWELSVSY_					0	0	0			REV__TTLL6|p.R152W|1|0.25|ENSG00000170703|chr17:48801551-48801551|G/A|missense_variant	REV__TTLL6|p.R152W|1|0.25|ENSG00000170703|chr17:48801551-48801551|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.74566650390625	2	491.74765	981.480748	-1.2614	-0.0006203	-2.0422	-0.0010042	-3.3036	-0.0016245	491.7467656381067	25.583	0.096279	25.583	25.499	25.596	0					6	3	2	0	0	0	0.44433	1	7970	7970		65.803	2.2693	1	344360	+		48896	22246	32320	32459	49505	49505					-0.010733237137174001
VWEPPIIDGG	10	Unmodified	_VWEPPIIDGG_					0	0	0		ENSG00000155657|ENST00000589042|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7788696289062	2	541.779482	1081.54441	2.0519	0.0011117	-0.60096	-0.00032559	1.451	0.0007861	541.778599610044	43.197	0.17978	43.197	43.067	43.247	0					8	5	2	0	0	0	0.58896	1	17285	17285		35.618	18.253	1	47550			48897	5134;11594	32321	32460	49506	49506					0.006900367233583893
VWESLQGTL	9	Unmodified	_VWESLQGTL_					0	0	0		ENST00000292530.10_1_19:14829575-14829656:+|nuORF	ENST00000292530.10_1_19:14829575-14829656:+|nuORF	ENST00000292530.10_1_19:14829575-14829656:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7704467773438	2	516.771657	1031.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.999	1	31.999	31.499	32.499	0								0	0	0	0.19749	1	12021	12021		51.335	0.14276	1				48898	8442	32322	32461	49507	49507					0.014257502063401262
VWKDIHLGCL	10	Unmodified	_VWKDIHLGCL_					0	0	0		ENST00000510994.5_1_3:134204333-134204429:-|nuORF	ENST00000510994.5_1_3:134204333-134204429:-|nuORF	ENST00000510994.5_1_3:134204333-134204429:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.31884765625	2	592.318251	1182.62195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.769	1	28.769	28.269	29.269	0								0	0	0	0.39525	1	9012	9012		31.955	20.444	1				48899	10235	32323	32462	49508	49508					0.037943513879099555
VWKISPLFK	9	Unmodified	_VWKISPLFK_					0	0	0		SLC6A7|p.F324Lfs*76|1|0.37|ENSG00000011083|chr5:150202585-150202586|-/C|frameshift_variant;ENSG00000011083|ENST00000230671|SLC6A7	SLC6A7|p.F324Lfs*76|1|0.37|ENSG00000011083|chr5:150202585-150202586|-/C|frameshift_variant	SLC6A7|p.F324Lfs*76|1|0.37|ENSG00000011083|chr5:150202585-150202586|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	373.2294616699219	3	373.23046	1116.66955	0.35364	0.00013199	-3.1547	-0.0011774	-2.801	-0.0010454	373.2292013221711	16.937	0.17193	16.937	16.846	17.018	0					6	4	2	0	0	0	0.5741	1	4699	4699		24.519	0.99649	1	532380			48900	1044	32324	32463	49509	49509					0.1158837365042018
VWKSNNDG	8	Unmodified	_VWKSNNDG_					0	0	0			REV__IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	REV__IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.21844482421875	2	460.217049	918.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.755	1	29.755	29.255	30.255	0								0	0	0	1.7419	1	11052	11052		37.159	0.71236	1		+		48901	15085	32325	32464	49510	49510					-0.04292835693138386
VWLWAVEA	8	Unmodified	_VWLWAVEA_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	487.2589111328125	2	487.260728	972.506903	-2.912	-0.0014189	-1.1365	-0.00055379	-4.0485	-0.0019727	487.26013688018224	38.97	0.28067	38.97	38.862	39.143	0					39	14	4	0	0	0	0.67475	1	13896	13896		37.028	5.4987	1	407580			48902	1679	32326	32465	49511	49511					0.019549902484186532
VWNPRSHEKL	10	Unmodified	_VWNPRSHEKL_					0	0	0		WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant	WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	422.5630187988281	3	422.563161	1264.66765	-0.34247	-0.00014472	0.37161	0.00015703	0.029144	1.2315E-05	422.56320858400045	23.787	0.36255	23.787	23.634	23.996	0					20	7	4	0	0	0	0.36647	1	8128	8128		59.931	20.058	1	439880			48903	6710	32327	32466	49512	49512					0.045907128945145814
VWQESGVY	8	Unmodified	_VWQESGVY_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.2309265136719	2	484.229625	966.444697	0.011573	5.6039E-06	3.0834	0.0014931	3.0949	0.0014987	484.23092907541036	29.271	0.15293	29.271	29.192	29.345	0					9	6	2	0	0	0	0.64096	1	9219	9219		42.474	1.6963	1	79963			48904	4489	32328	32467	49513	49513					-0.03986780890568298
VWVAMTVL	8	Unmodified	_VWVAMTVL_					0	0	0			REV__ENSG00000173578|ENST00000309285|XCR1	REV__ENSG00000173578|ENST00000309285|XCR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	459.7611999511719	2	459.759507	917.50446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.177	1	37.177	36.677	37.677	0								0	0	0	1.7419	1	14076	14076		39.021	0.21535	1		+		48905	16519	32329	32468	49514	49514					0.042408185191106895
VWWGWIWR	8	Unmodified	_VWWGWIWR_					0	0	0			REV__ENST00000531086.1_1_11:66012415-66012523:-|nuORF	REV__ENST00000531086.1_1_11:66012415-66012523:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	594.8095703125	2	594.808711	1187.60287	0.13117	7.8021E-05	1.142	0.00067929	1.2732	0.00075731	594.8095814836854	14.08	0.042809	14.08	14.049	14.092	0					4	2	2	0	0	0	0.78146	1	2847	2847		23.037	1.3344	1	68012	+		48906	20057	32330	32469	49515	49515					0.016571828791484222
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	588.3519287109375	2	587.850773	1173.68699	0.13516	7.9452E-05	0.50845	0.00029889	0.64361	0.00037835	588.352478641728	41.153	0.13706	41.153	41.07	41.207	0					11	6	2	0	0	0	0.16018	1	15638	15638		84.916	33.723	1	97400			48907	6707	32331	32470	49516	49516					0.10709669185393977
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	587.8510131835938	2	587.850773	1173.68699	-0.18439	-0.0001084	0.48338	0.00028415	0.29898	0.00017576	587.8509046517725	41.125	0.17124	41.125	41.048	41.22	0					10	6	2	0	0	0	0.46215	1	16173	16173		49.442	10.189	1	147920			48908	6707	32331	32470	49517	49517					0.10709669185393977
VYAANPDMAQ	10	Unmodified	_VYAANPDMAQ_					0	0	0			REV__ENSG00000170099|ENST00000341584|SERPINA6	REV__ENSG00000170099|ENST00000341584|SERPINA6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.2453002929688	2	540.244949	1078.47534	0.95821	0.00051767	-0.11126	-6.0108E-05	0.84695	0.00045756	540.2448436096928	36.531	0.1797	36.531	36.459	36.639	0					12	9	2	0	0	0	0.60076	1	11976	11976		34.173	5.023	1	144730	+		48909	16350	32332	32471	49518	49518					-0.060753705678507686
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2716674804688	2	545.271824	1088.5291	0.39248	0.00021401	-0.14826	-8.084E-05	0.24422	0.00013317	545.271857366609	38.613	0.4958	38.613	38.485	38.981	0					34	19	2	0	0	0	0.41113	1	14797	14797		40.778	12.896	1	547950			48910	2029	32333	32472	49519	49519					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	545.27197265625	2	545.271824	1088.5291	1.9234	0.0010488	-1.4097	-0.00076868	0.51369	0.0002801	545.2710947217361	38.657	0.42289	38.657	38.505	38.928	0					34	15	3	0	0	0	0.15163	1	15156	15156		67.494	23.116	1	231900			48911	2029	32333	32472	49520	49520					-0.011628300738266262
VYAESTVAQS	10	Unmodified	_VYAESTVAQS_					0	0	0			REV__ENSG00000149577|ENST00000324225|SIDT2	REV__ENSG00000149577|ENST00000324225|SIDT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7572631835938	2	527.756204	1053.49785	2.0098	0.0010607	0.18408	9.7151E-05	2.1939	0.0011578	527.7562674470619	20.719	0.71047	20.719	20.493	21.204	0					33	16	3	0	0	0	0.56931	1	6422	6422		37.812	3.639	1	232130	+		48912	15429	32334	32473	49521	49521					-0.026754478985594687
VYAESTVAQS	10	Unmodified	_VYAESTVAQS_					0	0	0			REV__ENSG00000149577|ENST00000324225|SIDT2	REV__ENSG00000149577|ENST00000324225|SIDT2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7564697265625	2	527.756204	1053.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.481	1	20.481	19.981	20.981	0								0	0	0	0.35368	1	5767	5767		42.396	3.59	1		+		48913	15429	32334	32473	49522	49522					-0.026754478985594687
VYAGGFTL	8	Unmodified	_VYAGGFTL_					0	0	0			REV__SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	REV__SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.2185363769531	2	414.218529	826.422505	-0.39085	-0.0001619	0.21373	8.853E-05	-0.17713	-7.3369E-05	414.2186190194409	41.334	0.26721	41.334	41.198	41.465	0					9	6	2	0	0	0	0.59916	1	16424	16424		49.211	2.4444	1	143770	+		48914	13881	32335	32474	49523	49523					0.002350394316636084
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;PRPS1|p.T242I|1|0.5|ENSG00000147224|chrX:107647626-107647626|C/T|missense_variant;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	493.7873840332031	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.586	1	42.586	42.086	43.086	0								0	0	0	0.22106	1	13531	13531		47.916	15.961	1				48915	2140	32336	32475	49524	49524					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;PRPS1|p.T242I|1|0.5|ENSG00000147224|chrX:107647626-107647626|C/T|missense_variant;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.78680419921875	2	493.78711	985.559667	-0.47776	-0.00023591	0.15944	7.8727E-05	-0.31832	-0.00015718	493.78714448024704	42.829	0.2844	42.829	42.725	43.009	0					27	14	3	0	0	0	0.068692	1	16197	16197		88.643	14.668	1	302560			48916	2140	32336	32475	49525	49525					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;PRPS1|p.T242I|1|0.5|ENSG00000147224|chrX:107647626-107647626|C/T|missense_variant;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.7869873046875	2	493.78711	985.559667	0.64237	0.00031719	-0.98771	-0.00048772	-0.34534	-0.00017052	493.7865776871143	42.836	0.26461	42.836	42.736	43.001	0					22	13	2	0	0	0	0.021468	1	16776	16776		119.56	42.783	1	676600			48917	2140	32336	32475	49526	49526					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;PRPS1|p.T242I|1|0.5|ENSG00000147224|chrX:107647626-107647626|C/T|missense_variant;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.7876892089844	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.63	1	42.63	42.13	43.13	0								0	0	0	0.082189	1	14875	14875		76.847	19.035	1				48918	2140	32336	32475	49527	49527					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;PRPS1|p.T242I|1|0.5|ENSG00000147224|chrX:107647626-107647626|C/T|missense_variant;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.78692626953125	2	493.78711	985.559667	0.88395	0.00043648	-0.7748	-0.00038259	0.10915	5.3895E-05	493.786664376001	42.791	0.29827	42.791	42.662	42.96	0					22	9	3	0	0	0	0.021468	1	17086	17086		119.56	53.128	1	398810			48919	2140	32336	32475	49528	49528					0.06630948311226348
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.28558349609375	2	510.285266	1018.55598	-0.01002	-5.1133E-06	-0.47943	-0.00024465	-0.48945	-0.00024976	510.28486602904104	30.912	0.52849	30.912	30.514	31.043	0					19	12	3	0	0	0	0.048471	1	11183	11183		102.77	31.395	1	1440800			48920	4674	32337	32476	49529	49529					0.047442785373846164
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.2851867675781	2	510.285266	1018.55598	-0.44891	-0.00022907	-0.41902	-0.00021382	-0.86793	-0.00044289	510.28497294967616	30.698	0.25942	30.698	30.617	30.877	0					19	9	3	0	0	0	0.032052	1	10098	10098		115.46	44.081	1	230650			48921	4674	32337	32476	49530	49530					0.047442785373846164
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	510.28509521484375	2	510.285266	1018.55598	1.1954	0.00060999	-2.314	-0.0011808	-1.1186	-0.00057082	510.2841457918669	30.93	0.41688	30.93	30.725	31.141	0					19	9	3	0	0	0	0.023928	1	11607	11607		111.65	29.408	1	1093000			48922	4674	32337	32476	49531	49531					0.047442785373846164
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2854309082031	2	510.285266	1018.55598	-1.8055	-0.0009213	1.6133	0.00082324	-0.19217	-9.8063E-05	510.28619648327305	30.705	0.22119	30.705	30.572	30.793	0					13	6	3	0	0	0	0.02953	1	10483	10483		104.75	32.127	1	260200			48923	4674	32337	32476	49532	49532					0.047442785373846164
VYANGQHLF	9	Unmodified	_VYANGQHLF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7642822265625	2	524.764166	1047.51378	0.69375	0.00036405	0.30395	0.0001595	0.9977	0.00052356	524.7644338362978	34.508	0.34874	34.508	34.397	34.745	0					43	15	4	0	0	0	0.0062553	1	11260	11260		152.63	67.718	1	914160			48924	6315	32338	32477	49533	49533					-0.008076968710156507
VYANGQHLF	9	Unmodified	_VYANGQHLF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7643432617188	2	524.764166	1047.51378	0.0944	4.9538E-05	0.75292	0.00039511	0.84732	0.00044464	524.7645826701277	34.751	0.96912	34.751	34.6	35.569	0					58	25	4	0	0	0	0.005007	1	12948	12948		157.99	61.799	1	4536700			48925	6315	32338	32477	49534	49534					-0.008076968710156507
VYANGQHLF	9	Unmodified	_VYANGQHLF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.7644653320312	2	524.764166	1047.51378	0.58199	0.00030541	0.1692	8.8789E-05	0.75119	0.0003942	524.7642800895303	34.558	0.49864	34.558	34.42	34.919	0					56	22	4	0	0	0	0.032656	1	11640	11640		106.42	32.16	1	1278900			48926	6315	32338	32477	49535	49535					-0.008076968710156507
VYANGQHLF	9	Unmodified	_VYANGQHLF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.76416015625	2	524.764166	1047.51378	1.1538	0.00060548	-0.60122	-0.0003155	0.55258	0.00028998	524.7638885526994	34.534	0.36331	34.534	34.44	34.803	0					20	11	3	0	0	0	0.0090636	1	12221	12221		143.02	58.104	1	647140			48927	6315	32338	32477	49536	49536					-0.008076968710156507
VYANGQHLF	9	Unmodified	_VYANGQHLF_					0	0	0		ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	ENSG00000171747|ENST00000307751|LGALS4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7642211914062	2	524.764166	1047.51378	1.6266	0.00085359	-1.1756	-0.0006169	0.45104	0.00023669	524.7636015771532	34.726	0.40926	34.726	34.572	34.981	0					28	8	4	0	0	0	0.0021099	1	13324	13324		173.85	69.102	1	5286900			48928	6315	32338	32477	49537	49537					-0.008076968710156507
VYAPLAGGHF	10	Unmodified	_VYAPLAGGHF_					0	0	0			REV__PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	REV__PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	516.2708129882812	2	516.269084	1030.52362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.004	1	28.004	27.504	28.504	0								0	0	0	0.38459	1	8699	8699		35.201	1.7077	1		+		48929	17312	32339	32478	49538	49538					0.009574911343861459
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.8042602539062	2	557.803823	1113.59309	1.2942	0.00072189	-0.61686	-0.00034409	0.6773	0.0003778	557.8035295704321	18.131	0.14835	18.131	18.061	18.209	0					16	5	4	0	0	0	0.037569	1	4459	4459		85.359	47.548	1	945650			48930	7450	32340	32479	49539	49539					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	372.20489501953125	3	372.204974	1113.59309	0.78303	0.00029145	-0.98905	-0.00036813	-0.20602	-7.6682E-05	372.20456935972203	18.437	0.2727	18.437	18.339	18.612	0					18	6	5	0	0	0	0.39215	1	5403	5403		42.396	2.338	1	3623200			48931	7450	32340	32479	49540	49540					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.8043823242188	2	557.803823	1113.59309	0.54166	0.00030214	0.05247	2.9268E-05	0.59413	0.00033141	557.8037768337223	18.469	0.43349	18.469	18.369	18.803	0					22	10	4	0	0	0	0.00024018	1	5396	5396		193.98	111.74	1	5057300			48932	7450	32340	32479	49541	49541					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8043212890625	2	557.803823	1113.59309	0.11924	6.651E-05	0.75945	0.00042362	0.87868	0.00049013	557.8040539500043	18.153	0.091438	18.153	18.093	18.185	0					8	3	3	0	0	0	0.055856	1	4701	4701		76.847	32.469	1	236700			48933	7450	32340	32479	49542	49542					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8038940429688	2	557.803823	1113.59309	-0.48377	-0.00026985	0.78949	0.00044038	0.30572	0.00017053	557.8041676572508	18.147	0.12116	18.147	18.082	18.204	0					9	4	3	0	0	0	0.0086566	1	4695	4695		102.77	28.518	1	188440			48934	7450	32340	32479	49543	49543					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8042602539062	2	557.803823	1113.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.424	1	18.424	17.924	18.924	0								0	0	0	0.018211	1	5652	5652		85.359	56.21	1				48935	7450	32340	32479	49544	49544					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.8042602539062	2	557.803823	1113.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.408	1	18.408	17.908	18.908	0								0	0	0	0.0015638	1	5644	5644		119.56	80.751	1				48936	7450	32340	32479	49545	49545					0.04083950083122545
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.8077392578125	2	533.805834	1065.59712	2.2982	0.0012268	-0.54096	-0.00028877	1.7573	0.00093804	533.8062258440469	44.986	0.088356	44.986	44.922	45.01	0					8	5	2	0	0	0	0.03984	1	16793	16793		99.375	46.024	1	36545			48937	6160	32341	32480	49546	49546					0.06694039576836985
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8062133789062	2	533.805834	1065.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.949	1	44.949	44.449	45.449	0								0	0	0	0.022698	1	17443	17443		99.375	36.069	1				48938	6160	32341	32480	49547	49547					0.06694039576836985
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.805908203125	2	533.805834	1065.59712	1.8104	0.00096641	-0.91268	-0.00048719	0.89774	0.00047922	533.80537006192	44.931	0.25513	44.931	44.837	45.092	0					21	10	3	0	0	0	0.027316	1	17977	17977		111.65	48.342	1	233700			48939	6160	32341	32480	49548	49548					0.06694039576836985
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2533569335938	2	515.253631	1028.49271	1.2957	0.00066759	-0.97037	-0.00049999	0.32529	0.00016761	515.2531165611446	28.448	0.21583	28.448	28.368	28.584	0					12	8	2	0	0	0	0.07136	1	8882	8882		87.696	21.799	1	215950			48940	7594	32342	32481	49549	49549					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2537841796875	2	515.253631	1028.49271	1.1968	0.00061667	-2.5955	-0.0013373	-1.3986	-0.00072065	515.2520657693234	28.697	0.45391	28.697	28.603	29.057	0					34	11	4	0	0	0	0.070005	1	10179	10179		88.177	16.299	1	1207000			48941	7594	32342	32481	49550	49550					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2537841796875	2	515.253631	1028.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.745	1	28.745	28.245	29.245	0								0	0	0	0.13425	1	10567	10567		63.534	24.512	1				48942	7594	32342	32481	49551	49551					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.25341796875	2	515.253631	1028.49271	0.70273	0.00036208	-0.90392	-0.00046575	-0.20119	-0.00010366	515.2533309311106	28.526	0.17035	28.526	28.442	28.613	0					11	4	3	0	0	0	0.19952	1	9469	9469		61.691	8.3398	1	187450			48943	7594	32342	32481	49552	49552					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.25390625	2	515.253631	1028.49271	0.15305	7.8862E-05	0.37826	0.0001949	0.53131	0.00027376	515.2536442224741	28.666	0.26875	28.666	28.558	28.826	0					10	5	3	0	0	0	0.16806	1	10424	10424		65.465	20.934	1	476980			48944	7594	32342	32481	49553	49553					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2539672851562	2	515.253631	1028.49271	1.4962	0.00077092	-2.2775	-0.0011735	-0.78128	-0.00040256	515.2524084914847	28.649	0.46727	28.649	28.542	29.009	0					17	9	2	0	0	0	0.18416	1	10415	10415		63.534	19.157	1	1540200			48945	7594	32342	32481	49554	49554					-0.020397069705495596
VYASLAKGIK	10	Unmodified	_VYASLAKGIK_					0	0	0		nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.321533203125	2	525.321317	1048.62808	1.3902	0.00073031	-2.1572	-0.0011332	-0.76702	-0.00040293	525.319389795446	30.092	0.095507	30.092	30.024	30.119	0					6	3	2	0	0	0	0.50881	1	9558	9558		44.377	0	1	81494			48946	5848	32343	32482	49555	49555					0.10571192891075043
VYCQILKQL	9	Carbamidomethyl (C)	_VYC(Carbamidomethyl (C))QILKQL_	VYC(1)QILKQL		VYC(53)QILKQL		0	1	0		nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF;nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6|MYO7B	nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	582.82666015625	2	582.825909	1163.63727	3.2288	0.0018818	-3.5836	-0.0020886	-0.35478	-0.00020677	582.8242000747908	42.271	0.13708	42.271	42.198	42.335	0					5	3	2	0	0	0	0.26904	1	16862	16862		53.351	20.539	1	74499			48947	6203	32344	32483	49556	49556	265				0.06199218185111022
VYDGKFAIF	9	Unmodified	_VYDGKFAIF_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;nc|ENSG00000065361|P21860-2|ERBB3	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2802734375	2	530.279118	1058.54368	3.4386	0.0018234	-2.1235	-0.0011261	1.3151	0.00069736	530.2778443599302	48.109	0.20988	48.109	48.049	48.259	0					17	10	2	0	0	0	0.14603	1	19138	19138		68.787	16.488	1	88302			48948	1370	32345	32484	49557	49557					0.016752420743159746
VYDLMRQCW	9	Unmodified	_VYDLMRQCW_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.2764282226562	2	607.278269	1212.54198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.043	1	31.043	30.543	31.543	0								0	0	0	0.35899	1	11668	11668		23.042	1.0826	1				48949	3162	32346	32485	49558	49558					-0.055784582775913805
VYDQQREVY	9	Unmodified	_VYDQQREVY_					0	0	0		nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55;CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant	nc|ENSG00000138180|Q53EZ4-2|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.290771484375	2	600.288202	1198.56185	3.1189	0.0018723	0.085178	5.1131E-05	3.2041	0.0019234	600.2882310154995	38.083	4.4869	38.083	37.92	42.407	0					281	102	5	0	0	0	0.19605	5	14920	14920;15279;16128;16273;16772		62.107	10.582	1	43019000			48950	4236	32347	32486	49559;49560;49561;49562;49563	49559					-0.029486677416116436
VYDQQREVY	9	Unmodified	_VYDQQREVY_					0	0	0		nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55;CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant	nc|ENSG00000138180|Q53EZ4-2|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2909545898438	2	600.288202	1198.56185	3.1223	0.0018743	1.2326	0.0007399	4.3549	0.0026142	600.2890051003562	43.563	0.88627	43.563	43.257	44.143	0					50	31	2	0	0	0	0.41113	1	17418	17418		40.778	9.2484	1	125970			48951	4236	32347	32486	49564	49564					-0.029486677416116436
VYDQQREVY	9	Unmodified	_VYDQQREVY_					0	0	0		nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55;CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant	nc|ENSG00000138180|Q53EZ4-2|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2896728515625	2	600.288202	1198.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.511	1	50.511	50.011	51.011	0								0	0	0	0.29774	1	19908	19908		35.618	0	1				48952	4236	32347	32486	49565	49565					-0.029486677416116436
VYDSSIYIL	9	Unmodified	_VYDSSIYIL_					0	0	0			REV__nc|ENSG00000038274|Q9NZL9-3|MAT2B	REV__nc|ENSG00000038274|Q9NZL9-3|MAT2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.283935546875	2	536.78169	1071.54883	1.9521	0.0010479	0.043923	2.3577E-05	1.996	0.0010714	536.7816934843124	45.889	0.84916	45.889	45.75	46.599	0					93	39	4	0	0	0	0.50461	1	18472	18472		31.955	31.955	1	1757600	+		48953	12988	32348	32487	49566	49566					0.015915011462766415
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7643432617188	2	527.763832	1053.51311	0.55699	0.00029396	-0.30011	-0.00015839	0.25688	0.00013557	527.7640960044171	30.915	0.17022	30.915	30.796	30.966	0					11	7	2	0	0	0	0.078509	1	9873	9873		85.161	5.4482	1	74104			48954	4328	32349	32488	49567	49567					-0.011505363107289668
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7645263671875	2	527.763832	1053.51311	0.10569	5.5781E-05	0.11532	6.0862E-05	0.22101	0.00011664	527.76433368509	31.117	0.30908	31.117	30.982	31.291	0					10	7	2	0	0	0	0.037924	1	11286	11286		101.25	17.965	1	423430			48955	4328	32349	32488	49568	49568					-0.011505363107289668
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7645874023438	2	527.763832	1053.51311	0.10609	5.5989E-05	0.30823	0.00016267	0.41432	0.00021866	527.7640103358156	39.033	0.5176	39.033	38.916	39.434	0					38	18	3	0	0	0	0.2873	1	14828	14828		51.335	1.7994	1	1298600			48956	4328	32349	32488	49569	49569					-0.011505363107289668
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.76318359375	2	527.763832	1053.51311	0.28477	0.00015029	-0.0088373	-4.664E-06	0.27593	0.00014563	527.7639235153882	31.166	0.24545	31.166	31.012	31.257	0					9	5	2	0	0	0	0.18416	1	11695	11695		63.534	15.877	1	208620			48957	4328	32349	32488	49570	49570					-0.011505363107289668
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7639770507812	2	527.763832	1053.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.13	1	31.13	30.63	31.63	0								0	0	0	0.040385	1	11605	11605		90.601	26.394	1				48958	4328	32349	32488	49571	49571					-0.011505363107289668
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;SP140L|p.F492Lfs*17|1|0.46|ENSG00000185404|chr2:230401414-230401414|T/-|frameshift_variant;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;SP140L|p.M88Nfs*3|1|0.34|ENSG00000185404|chr2:230357955-230357956|-/A|frameshift_variant	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.2960815429688	2	578.295299	1154.57605	-0.060963	-3.5254E-05	1.0092	0.00058362	0.94825	0.00054837	578.7972000041644	37.845	0.15383	37.845	37.729	37.882	0					10	5	2	0	0	0	0.18605	1	14355	14355		63.306	17.334	1	84863			48959	7078	32350	32489	49572	49572					0.004940294773177811
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;SP140L|p.F492Lfs*17|1|0.46|ENSG00000185404|chr2:230401414-230401414|T/-|frameshift_variant;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;SP140L|p.M88Nfs*3|1|0.34|ENSG00000185404|chr2:230357955-230357956|-/A|frameshift_variant	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.294921875	2	578.295299	1154.57605	1.6827	0.00097309	-0.79016	-0.00045694	0.89252	0.00051614	578.294637479092	37.78	0.27901	37.78	37.685	37.964	0					14	9	2	0	0	0	0.20551	1	14803	14803		60.972	4.2509	1	96134			48960	7078	32350	32489	49573	49573					0.004940294773177811
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;SP140L|p.F492Lfs*17|1|0.46|ENSG00000185404|chr2:230401414-230401414|T/-|frameshift_variant;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;SP140L|p.M88Nfs*3|1|0.34|ENSG00000185404|chr2:230357955-230357956|-/A|frameshift_variant	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.295654296875	2	578.295299	1154.57605	3.2623	0.0018865	-2.0134	-0.0011644	1.2488	0.0007222	578.2939792707214	37.733	0.48385	37.733	37.627	38.111	0					19	10	3	0	0	0	0.0086566	1	14765	14765		143.89	72.591	1	568700			48961	7078	32350	32489	49574	49574					0.004940294773177811
VYEKDVKL	8	Unmodified	_VYEKDVKL_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2841491699219	2	497.2844	992.554247	-0.73943	-0.00036771	0.96139	0.00047808	0.22196	0.00011038	497.28498554026174	34.466	0.16946	34.466	34.399	34.568	0					8	4	2	0	0	0	0.74405	1	13288	13288		27.882	1.0861	1	52482	+		48962	16099	32351	32490	49575	49575					0.05767224728754172
VYENMKQTL	9	Unmodified	_VYENMKQTL_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.28564453125	2	563.284074	1124.5536	1.2576	0.00070836	-0.27765	-0.0001564	0.9799	0.00055196	563.2836955969781	29.547	0.13371	29.547	29.486	29.62	0					6	4	2	0	0	0	0.25716	1	9331	9331		54.776	15.523	1	76174			48963	1728	32352	32491	49576	49576					-0.003699379825775395
VYENMKQTL	9	Unmodified	_VYENMKQTL_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.2844848632812	2	563.284074	1124.5536	0.43856	0.00024703	-0.11179	-6.2972E-05	0.32677	0.00018406	563.2841345885187	29.809	0.17175	29.809	29.723	29.895	0					8	4	2	0	0	0	0.020674	1	10690	10690		120.87	38.628	1	303820			48964	1728	32352	32491	49577	49577					-0.003699379825775395
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.7806396484375	2	554.277106	1106.53966	1.6338	0.0009056	-1.461	-0.0008098	0.17284	9.5802E-05	554.2760171431132	42.096	0.17691	42.096	41.98	42.157	0					13	8	2	0	0	0	0.098791	1	16529	16529		79.713	22.992	1	67982			48965	5743	32353	32492	49578	49578					-0.009348474193984657
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.277587890625	2	554.277106	1106.53966	1.8204	0.001009	-1.1327	-0.00062783	0.68772	0.00038119	554.2761992774911	42.076	0.28761	42.076	41.942	42.229	0					15	7	3	0	0	0	0.015496	1	16759	16759		129.42	60.634	1	258530			48966	5743	32353	32492	49579	49579					-0.009348474193984657
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.2783203125	2	554.277106	1106.53966	3.6026	0.0019968	-3.0971	-0.0017166	0.50553	0.0002802	554.2753356106418	42.062	0.30747	42.062	41.906	42.214	0					18	8	3	0	0	0	0.063171	1	16752	16752		90.601	28.493	1	341780			48967	5743	32353	32492	49580	49580					-0.009348474193984657
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	592.800048828125	2	592.800946	1183.58734	0.12755	7.5613E-05	0.10496	6.2219E-05	0.23251	0.00013783	592.8010006535743	35.86	0.20602	35.86	35.775	35.981	0					14	10	2	0	0	0	0.21419	1	11752	11752		59.931	24.779	1	85484			48968	7659	32354	32493	49581	49581					0.0028880678080440703
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.8011474609375	2	592.800946	1183.58734	0.28358	0.00016811	-0.57848	-0.00034292	-0.2949	-0.00017482	592.8004278159772	36.135	0.20039	36.135	36.046	36.247	0					14	5	3	0	0	0	0.24169	1	13647	13647		56.632	22.46	1	786350			48969	7659	32354	32493	49582	49582					0.0028880678080440703
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	593.3027954101562	2	592.800946	1183.58734	-1.7919	-0.0010623	1.7636	0.0010455	-0.028294	-1.6773E-05	593.3036632459815	35.904	0.21004	35.904	35.826	36.036	0					15	8	2	0	0	0	0.15558	1	12815	12815		66.962	26.184	1	168230			48970	7659	32354	32493	49583	49583					0.0028880678080440703
VYFSAAHAL	9	Unmodified	_VYFSAAHAL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7559814453125	2	489.75581	977.497067	-0.52504	-0.00025714	0.2967	0.00014531	-0.22835	-0.00011183	489.7560926763126	37.761	0.16401	37.761	37.657	37.821	0					6	3	2	0	0	0	0.028654	1	14780	14780		110.34	55.573	1	102700			48971	3983	32355	32494	49584	49584					0.007418022430329074
VYFSAIQKI	9	Unmodified	_VYFSAIQKI_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.8080444335938	2	534.808042	1067.60153	3.3738	0.0018044	-2.4445	-0.0013073	0.92939	0.00049704	534.8069302411412	42.809	0.20847	42.809	42.687	42.896	0					13	6	3	0	0	0	0.07136	1	17098	17098		87.696	13.441	1	396550			48972	3537	32356	32495	49585	49585					0.07043503999739187
VYFTRSTTV	9	Unmodified	_VYFTRSTTV_					0	0	0			REV__ENSG00000107679|ENST00000368990|PLEKHA1	REV__ENSG00000107679|ENST00000368990|PLEKHA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	537.2855224609375	2	537.284931	1072.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.741	1	45.741	45.241	46.241	0								0	0	0	0.35899	1	14696	14696		23.042	0	1		+		48973	13859	32357	32496	49586	49586					0.021934390976412033
VYGDPDTLIGN	11	Unmodified	_VYGDPDTLIGN_					0	0	0			REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	582.2813110351562	2	582.282586	1162.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.326	1	21.326	20.826	21.826	0								0	0	0	0.45674	1	6104	6104		23.523	0.94304	1		+		48974	22142	32358	32497	49587	49587					-0.02415489835743756
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.78271484375	2	536.782359	1071.55016	1.8606	0.00099875	-0.18814	-0.00010099	1.6725	0.00089776	536.7821966289725	45.921	0.36405	45.921	45.832	46.196	0					51	21	4	0	0	0	0.0025305	1	17710	17710		128.86	42.952	1	680910			48975	8746	32359	32498	49588	49588					0.017251800257099603
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.7844848632812	2	536.782359	1071.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.237	1	46.237	45.737	46.737	0								0	0	0	0.2591	1	17794	17794		26.796	5.0938	1				48976	8746	32359	32498	49589	49589					0.017251800257099603
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7828369140625	2	536.782359	1071.55016	1.047	0.00056202	0.91737	0.00049243	1.9644	0.0010545	536.7824301142604	45.722	0.090508	45.722	45.672	45.763	0					9	5	2	0	0	0	0.1424	1	15529	15529		73.975	24.764	1	62941			48977	8746	32359	32498	49590	49590					0.017251800257099603
VYGFMMLVL	9	Unmodified	_VYGFMMLVL_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.7822875976562	2	536.782124	1071.5497	0.2046	0.00010982	1.1424	0.00061323	1.347	0.00072306	536.7829535944702	45.973	0.18492	45.973	45.875	46.06	0					19	11	2	0	0	0	0.25109	1	17041	17041		49.211	1.2952	1	88229			48978	1575	32360	32499	49591	49591					0.016783009899882018
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF	nc|ENSG00000167671|Q9BZV1-2|UBXN6	nc|ENSG00000167671|Q9BZV1-2|UBXN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7919311523438	2	527.290017	1052.56548	1.7568	0.00092633	-0.91378	-0.00048183	0.843	0.00044451	527.2891663288503	41.604	0.25967	41.604	41.508	41.768	0					21	10	3	0	0	0	0.07136	1	16346	16346		87.696	32.974	1	211110			48979	6016	32361	32500	49592	49592					0.04130046822888289
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF	nc|ENSG00000167671|Q9BZV1-2|UBXN6	nc|ENSG00000167671|Q9BZV1-2|UBXN6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.290283203125	2	527.290017	1052.56548	1.6284	0.00085862	-1.148	-0.00060531	0.48041	0.00025332	527.2892234209588	41.56	0.34852	41.56	41.439	41.787	0					20	9	3	0	0	0	0.063823	1	16531	16531		90.37	28.262	1	806560			48980	6016	32361	32500	49593	49593					0.04130046822888289
VYGIYFAVI	9	Unmodified	_VYGIYFAVI_					0	0	0		SLC19A3|p.S444I|1|0.46|ENSG00000135917|chr2:227687557-227687557|C/A|missense_variant	SLC19A3|p.S444I|1|0.46|ENSG00000135917|chr2:227687557-227687557|C/A|missense_variant	SLC19A3|p.S444I|1|0.46|ENSG00000135917|chr2:227687557-227687557|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.2985229492188	2	522.791861	1043.56917	3.409	0.0017822	3.6434	0.0019048	7.0524	0.0036869	522.793601350814	40.756	0.63353	40.756	40.469	41.103	0					27	12	3	0	0	0	0.45358	1	16254	16254		39.021	5.5059	1	493000			48981	22404	32362	32501	49594	49594					0.04912716596732025
VYGKSSHL	8	Unmodified	_VYGKSSHL_					0	0	0		ENSG00000119138|ENST00000377126|KLF9;ENSG00000169926|ENST00000307145|KLF13	ENSG00000119138|ENST00000377126|KLF9	ENSG00000119138|ENST00000377126|KLF9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	445.7400207519531	2	445.74016	889.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.087	1	18.087	17.587	18.587	0								0	0	0	1.7419	1	5226	5226		51.335	12.529	1				48982	3099	32363	32502	49595	49595					0.016612292089462244
VYGKTSHL	8	Unmodified	_VYGKTSHL_					0	0	0		ENSG00000105866|ENST00000222584|SP4;ENST00000465379.1_1_2:174774671-174778005:-|nuORF;nc|ENSG00000164651|Q8IXZ3-2|SP8;nc|ENSG00000164651|Q8IXZ3-1|SP8;nc|ENSG00000172845|Q02447-4|SP3;ENSG00000217236|ENST00000394967|SP9;nc|ENSG00000164651|Q8IXZ3|SP8;nc|ENSG00000172845|Q02447-3|SP3;SP8|p.E482Sfs*8|1|0.36|ENSG00000164651|chr7:20784320-20784320|G/-|frameshift_variant;ENSG00000164651|ENST00000418710|SP8;nc|ENSG00000172845|Q02447-5|SP3;SP3|p.G708Vfs*20|1|0.27|ENSG00000172845|chr2:173910166-173910166|T/-|frameshift_variant;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1;ENSG00000204335|ENST00000375281|SP5	ENSG00000105866|ENST00000222584|SP4;nc|ENSG00000185591|P08047-3|SP1;ENSG00000204335|ENST00000375281|SP5	ENSG00000204335|ENST00000375281|SP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.2501525878906	2	452.747985	903.481417	0.58272	0.00026383	-0.22162	-0.00010034	0.3611	0.00016349	452.74783406098857	18.388	0.10503	18.388	18.316	18.421	0					8	4	2	0	0	0	0.43813	1	4554	4554		66.429	18.514	1	95864			48983	2405;7089;7693	32364	32503	49596	49596					0.025815157259899024
VYGKTSHL	8	Unmodified	_VYGKTSHL_					0	0	0		ENSG00000105866|ENST00000222584|SP4;ENST00000465379.1_1_2:174774671-174778005:-|nuORF;nc|ENSG00000164651|Q8IXZ3-2|SP8;nc|ENSG00000164651|Q8IXZ3-1|SP8;nc|ENSG00000172845|Q02447-4|SP3;ENSG00000217236|ENST00000394967|SP9;nc|ENSG00000164651|Q8IXZ3|SP8;nc|ENSG00000172845|Q02447-3|SP3;SP8|p.E482Sfs*8|1|0.36|ENSG00000164651|chr7:20784320-20784320|G/-|frameshift_variant;ENSG00000164651|ENST00000418710|SP8;nc|ENSG00000172845|Q02447-5|SP3;SP3|p.G708Vfs*20|1|0.27|ENSG00000172845|chr2:173910166-173910166|T/-|frameshift_variant;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1;ENSG00000204335|ENST00000375281|SP5	ENSG00000105866|ENST00000222584|SP4;nc|ENSG00000185591|P08047-3|SP1;ENSG00000204335|ENST00000375281|SP5	ENSG00000204335|ENST00000375281|SP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7481384277344	2	452.747985	903.481417	0.27748	0.00012563	-0.47719	-0.00021605	-0.19971	-9.0417E-05	452.7477660781167	18.7	0.17729	18.7	18.612	18.789	0					9	4	3	0	0	0	0.3049	1	5510	5510		82.241	16.437	1	415320			48984	2405;7089;7693	32364	32503	49597	49597					0.025815157259899024
VYGKTSHL	8	Unmodified	_VYGKTSHL_					0	0	0		ENSG00000105866|ENST00000222584|SP4;ENST00000465379.1_1_2:174774671-174778005:-|nuORF;nc|ENSG00000164651|Q8IXZ3-2|SP8;nc|ENSG00000164651|Q8IXZ3-1|SP8;nc|ENSG00000172845|Q02447-4|SP3;ENSG00000217236|ENST00000394967|SP9;nc|ENSG00000164651|Q8IXZ3|SP8;nc|ENSG00000172845|Q02447-3|SP3;SP8|p.E482Sfs*8|1|0.36|ENSG00000164651|chr7:20784320-20784320|G/-|frameshift_variant;ENSG00000164651|ENST00000418710|SP8;nc|ENSG00000172845|Q02447-5|SP3;SP3|p.G708Vfs*20|1|0.27|ENSG00000172845|chr2:173910166-173910166|T/-|frameshift_variant;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1;ENSG00000204335|ENST00000375281|SP5	ENSG00000105866|ENST00000222584|SP4;nc|ENSG00000185591|P08047-3|SP1;ENSG00000204335|ENST00000375281|SP5	ENSG00000204335|ENST00000375281|SP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	452.74786376953125	2	452.747985	903.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.641	1	18.641	18.141	19.141	0								0	0	0	1.7419	1	5756	5756		63.306	5.495	1				48985	2405;7089;7693	32364	32503	49598	49598					0.025815157259899024
VYGKVDSF	8	Unmodified	_VYGKVDSF_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.73504638671875	2	457.734543	913.454533	0.051146	2.3411E-05	-0.18984	-8.6896E-05	-0.13869	-6.3484E-05	457.7344080124987	30.388	0.18961	30.388	30.323	30.513	0					9	7	2	0	0	0	0.46013	1	9682	9682		64.207	18.255	1	59049			48986	4997	32365	32504	49599	49599					-0.005655928851979297
VYGKVDSF	8	Unmodified	_VYGKVDSF_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.73431396484375	2	457.734543	913.454533	0.77603	0.00035522	-1.758	-0.00080472	-0.98201	-0.0004495	457.733820374316	30.667	0.39935	30.667	30.566	30.966	0					18	9	3	0	0	0	0.43813	1	11092	11092		66.429	16.988	1	607920			48987	4997	32365	32504	49600	49600					-0.005655928851979297
VYGKVDSF	8	Unmodified	_VYGKVDSF_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.7342529296875	2	457.734543	913.454533	-0.1529	-6.9988E-05	-1.0049	-0.00046	-1.1579	-0.00052999	457.73416341401554	30.673	0.40199	30.673	30.563	30.965	0					20	9	4	0	0	0	0.49216	1	11513	11513		60.972	4.2509	1	431020			48988	4997	32365	32504	49601	49601					-0.005655928851979297
VYGKVDSF	8	Unmodified	_VYGKVDSF_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.7342224121094	2	457.734543	913.454533	0.02517	1.1521E-05	-0.041207	-1.8862E-05	-0.016037	-7.3406E-06	457.73434765410394	30.457	0.16853	30.457	30.403	30.572	0					6	4	2	0	0	0	0.49216	1	10380	10380		60.972	13.056	1	87149			48989	4997	32365	32504	49602	49602					-0.005655928851979297
VYGKVDSF	8	Unmodified	_VYGKVDSF_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	457.7342224121094	2	457.734543	913.454533	-0.43765	-0.00020033	-0.53378	-0.00024433	-0.97143	-0.00044466	457.734410428576	30.637	0.3199	30.637	30.529	30.848	0					16	6	3	0	0	0	0.43813	1	11352	11352		66.429	7.6473	1	745460			48990	4997	32365	32504	49603	49603					-0.005655928851979297
VYGNWNGPHR	10	Unmodified	_VYGNWNGPHR_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2896728515625	2	600.288871	1198.56319	2.1031	0.0012625	0.089968	5.4007E-05	2.1931	0.0013165	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.57532	1	17846	17846		37.159	37.159	1	67330000			48991	1906	32366	32505	49604	49604					-0.028149888622237995
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2626037597656	2	504.263468	1006.51238	-0.057465	-2.8977E-05	-0.14579	-7.3516E-05	-0.20325	-0.00010249	504.26324955747094	48.235	0.10393	48.235	48.154	48.258	0					8	6	2	0	0	0	0.39215	1	17578	17578		42.396	3.59	1	45723			48992	3702	32367	32506	49605	49605					0.009386690402379827
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	486.2630615234375	2	486.263468	970.512382	0.012285	5.9738E-06	-0.55866	-0.00027165	-0.54637	-0.00026568	486.2631967225069	36.084	0.27365	36.084	35.994	36.267	0					26	13	3	0	0	0	0.085655	1	11819	11819		82.75	26.029	1	590330			48993	5117	32368	32507	49606	49606					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	486.26348876953125	2	486.263468	970.512382	-0.29073	-0.00014137	-0.29541	-0.00014365	-0.58614	-0.00028502	486.2633155341794	36.351	0.47745	36.351	36.274	36.751	0					34	13	3	0	0	0	0.022525	1	13693	13693		117.81	51.382	1	3227100			48994	5117	32368	32507	49607	49607					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.262939453125	2	486.263468	970.512382	-1.2408	-0.00060333	0.95656	0.00046514	-0.28419	-0.00013819	486.26393519876876	36.132	0.31934	36.132	36.047	36.366	0					33	14	3	0	0	0	0.032383	1	12230	12230		106.68	37.055	1	691800			48995	5117	32368	32507	49608	49608					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	486.2630920410156	2	486.263468	970.512382	0.64309	0.00031271	-1.1374	-0.00055305	-0.49426	-0.00024034	486.26282203393214	36.356	0.62692	36.356	36.242	36.869	0					48	18	5	0	0	0	0.015496	1	14139	14139		129.42	30.792	1	5602000			48996	5117	32368	32507	49609	49609					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.26300048828125	2	486.263468	970.512382	-0.241	-0.00011719	0.26405	0.0001284	0.023048	1.1207E-05	486.2635742727975	36.127	0.33894	36.127	36.036	36.375	0					22	12	3	0	0	0	0.076532	1	12915	12915		85.862	38.204	1	451910			48997	5117	32368	32507	49610	49610					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.2634582519531	2	486.263468	970.512382	0.82766	0.00040246	-0.95392	-0.00046386	-0.12627	-6.1399E-05	486.2630526523005	36.273	0.61169	36.273	36.166	36.778	0					42	12	5	0	0	0	0.0097668	1	14090	14090		141.52	71.893	1	6920300			48998	5117	32368	32507	49611	49611					0.025946690402406603
VYGTGGSILY	10	Unmodified	_VYGTGGSILY_					0	0	0			REV__IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant	REV__IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.265869140625	2	515.266207	1028.51786	-0.12843	-6.6174E-05	0.078479	4.0437E-05	-0.049947	-2.5736E-05	515.2663537653973	32.74	0.20028	32.74	32.657	32.857	0					10	7	2	0	0	0	0.65213	1	10964	10964		27.882	1.0861	1	133450	+		48999	13823	32369	32508	49612	49612					0.004743478320506256
VYGVMCKQGA	10	Unmodified	_VYGVMCKQGA_					0	0	0			REV__nc|ENSG00000151572|Q32M45-3|ANO4	REV__nc|ENSG00000151572|Q32M45-3|ANO4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.2559204101562	2	528.254262	1054.49397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.225	1	31.225	30.725	31.725	0								0	0	0	0.40002	1	11651	11651		30.504	0.6621	1		+		49000	15481	32370	32509	49613	49613					-0.031095321976181367
VYGVRTKEI	9	Unmodified	_VYGVRTKEI_					0	0	0		OR56A1|p.P292H|1|0.1|ENSG00000180934|chr11:6026830-6026830|G/T|missense_variant;ENSG00000188691|ENST00000532411|OR56A5;ENSG00000183389|ENST00000641156|OR56A4;ENSG00000180934|ENST00000641900|OR56A1;nc|ENSG00000180934|Q8NGH5|OR56A1	OR56A1|p.P292H|1|0.1|ENSG00000180934|chr11:6026830-6026830|G/T|missense_variant	OR56A1|p.P292H|1|0.1|ENSG00000180934|chr11:6026830-6026830|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.8101806640625	2	532.808574	1063.60259	3.4023	0.0018128	-0.76724	-0.00040879	2.6351	0.001404	532.8084032362259	44.007	0.13485	44.007	43.917	44.052	0					8	5	2	0	0	0	0.43426	1	17641	17641		38.806	1.647	1	31311			49001	6827	32371	32510	49614	49614					0.07333718368658992
VYGVSKETF	9	Unmodified	_VYGVSKETF_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	515.2659301757812	2	515.266207	1028.51786	1.3002	0.00066997	-1.7677	-0.00091084	-0.46748	-0.00024087	515.2655320434995	32.698	0.1638	32.698	32.625	32.788	0					13	6	3	0	0	0	0.07136	1	10582	10582		87.696	36.361	1	98812			49002	5675	32372	32511	49615	49615					0.004743478320278882
VYGVSKETF	9	Unmodified	_VYGVSKETF_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.2662963867188	2	515.266207	1028.51786	1.1919	0.00061416	-1.0041	-0.0005174	0.18779	9.6763E-05	515.2657838909673	32.944	0.24343	32.944	32.786	33.03	0					12	6	3	0	0	0	0.07136	1	12133	12133		87.696	32.192	1	443360			49003	5675	32372	32511	49616	49616					0.004743478320278882
VYGVSKETF	9	Unmodified	_VYGVSKETF_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.2664184570312	2	515.266207	1028.51786	1.3963	0.00071947	-1.3979	-0.00072028	-0.00158	-8.141E-07	515.2657411115235	32.925	0.23138	32.925	32.834	33.065	0					7	5	2	0	0	0	0.24095	1	12587	12587		56.721	6.6875	1	642820			49004	5675	32372	32511	49617	49617					0.004743478320278882
VYGVSKETF	9	Unmodified	_VYGVSKETF_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.2662353515625	2	515.266207	1028.51786	0.69897	0.00036015	-1.0667	-0.00054963	-0.36772	-0.00018947	515.2656106975281	32.711	0.20323	32.711	32.659	32.862	0					8	5	2	0	0	0	0.10506	1	11403	11403		78.264	39.011	1	90590			49005	5675	32372	32511	49618	49618					0.004743478320278882
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.8016967773438	2	555.800749	1109.58694	1.305	0.00072532	0.2275	0.00012645	1.5325	0.00085176	555.8010377010434	29.244	0.18826	29.244	29.151	29.339	0					10	7	2	0	0	0	0.23186	1	9226	9226		57.811	15.415	1	46573			49006	1958	32373	32512	49619	49619					0.03653431851603273
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.8009643554688	2	555.800749	1109.58694	0.5774	0.00032092	-0.41542	-0.00023089	0.16198	9.0028E-05	555.8009146643541	29.474	0.38318	29.474	29.351	29.734	0					20	9	3	0	0	0	0.068692	1	10540	10540		88.643	24.436	1	323840			49007	1958	32373	32512	49620	49620					0.03653431851603273
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.8013305664062	2	555.800749	1109.58694	-1.0299	-0.00057242	1.4	0.00077812	0.37009	0.0002057	555.8014851714283	29.333	0.18222	29.333	29.196	29.379	0					8	4	2	0	0	0	0.49003	1	9865	9865		33.516	0.70317	1	58682			49008	1958	32373	32512	49621	49621					0.03653431851603273
VYHNLKNVI	9	Unmodified	_VYHNLKNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	367.2131652832031	3	367.213469	1098.61858	0.47243	0.00017348	-1.8135	-0.00066595	-1.3411	-0.00049247	367.21273933659864	28.599	0.56828	28.599	28.319	28.888	0					32	14	3	0	0	0	0.2873	1	10111	10111		51.335	6.9583	1	1233100			49009	1530	32374	32513	49622	49622					0.07321424605561333
VYHNLKNVI	9	Unmodified	_VYHNLKNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	367.2132873535156	3	367.213469	1098.61858	0.47912	0.00017594	-0.871	-0.00031984	-0.39188	-0.0001439	367.21308618234906	28.606	0.36312	28.606	28.399	28.762	0					15	7	3	0	0	0	0.24095	2	10508	10508;10535		56.721	15.294	1	969130			49010	1530	32374	32513	49623;49624	49623					0.07321424605561333
VYHQLCRAL	9	Unmodified	_VYHQLCRAL_					0	0	0		sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.794189453125	2	551.794943	1101.57533	3.6945	0.0020386	-3.828	-0.0021123	-0.13355	-7.3695E-05	551.7937270311864	39.639	0.36944	39.639	39.455	39.825	0					11	8	2	0	0	0	0.41354	1	15690	15690		40.573	1.3198	1	134550			49011	22441	32375	32514	49625	49625					0.02860911556604151
VYIAGQQAF	9	Unmodified	_VYIAGQQAF_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	498.76116943359375	2	498.761092	995.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.269	1	42.269	41.769	42.769	0								0	0	0	0.03352	1	16859	16859		94.006	33.712	1				49012	4589	32376	32515	49626	49626					0.009697848974724366
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.Q183Tfs*5|1|0.35|ENSG00000113368|chr5:126805594-126805595|-/A|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.88519287109375	3	364.885241	1091.63389	-0.96846	-0.00035338	0.85363	0.00031148	-0.11483	-4.1901E-05	364.8854608446943	30.874	0.18039	30.874	30.775	30.956	0					12	6	2	0	0	0	0.46194	1	10173	10173		36.447	9.3994	1	258090			49013	2798	32377	32516	49627	49627					0.09174291402769086
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.Q183Tfs*5|1|0.35|ENSG00000113368|chr5:126805594-126805595|-/A|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	365.2197570800781	3	364.885241	1091.63389	-0.10383	-3.7886E-05	0.32129	0.00011724	0.21746	7.935E-05	364.88541678721975	30.857	0.1945	30.857	30.764	30.958	0					8	5	2	0	0	0	0.3269	1	10555	10555		47.96	16.43	1	124090			49014	2798	32377	32516	49628	49628					0.09174291402769086
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.8278198242188	2	560.827298	1119.64004	0.48728	0.00027328	0.17595	9.8677E-05	0.66323	0.00037195	560.8273646612846	31.41	0.49852	31.41	31.28	31.779	0					31	12	4	0	0	0	0.21263	1	11417	11417		60.118	8.9256	1	2895700			49015	5385	32378	32517	49629	49629					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.8274536132812	2	560.827298	1119.64004	-0.43183	-0.00024218	1.3517	0.00075805	0.91983	0.00051587	560.8280032374308	31.2	0.12717	31.2	31.148	31.275	0					6	4	2	0	0	0	0.35021	1	10320	10320		45.972	0	1	88043			49016	5385	32378	32517	49630	49630					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.82763671875	2	560.827298	1119.64004	-0.029796	-1.671E-05	0.37646	0.00021113	0.34666	0.00019442	560.827450971431	31.418	0.28939	31.418	31.316	31.605	0					15	6	3	0	0	0	0.098791	1	11834	11834		79.713	24.208	1	622090			49017	5385	32378	32517	49631	49631					0.08500809634278994
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	561.8156127929688	2	561.313689	1120.61282	1.276	0.00071623	-0.59029	-0.00033134	0.6857	0.00038489	561.3133582933472	24.505	0.26053	24.505	24.424	24.684	0					25	7	5	0	0	0	0.013878	1	7232	7232		132.76	31.157	1	1990200			49018	1370	32379	32518	49632	49632					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.3136596679688	2	561.313689	1120.61282	0.47919	0.00026898	-0.35139	-0.00019724	0.1278	7.1737E-05	561.3135040367388	24.781	0.60205	24.781	24.687	25.289	0					33	14	3	0	0	0	5.4275E-05	1	8391	8391		195.05	76.303	1	16388000			49019	1370	32379	32518	49633	49633					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.3139038085938	2	561.313689	1120.61282	0.12775	7.171E-05	0.64294	0.00036089	0.77069	0.0004326	561.314051082086	24.534	0.21562	24.534	24.468	24.683	0					19	7	4	0	0	0	0.020674	1	7511	7511		120.87	40.414	1	992910			49020	1370	32379	32518	49634	49634					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	561.3136596679688	2	561.313689	1120.61282	-0.42067	-0.00023613	0.92464	0.00051901	0.50397	0.00028288	561.3141039591158	24.55	0.16048	24.55	24.488	24.648	0					11	5	3	0	0	0	0.035062	1	7522	7522		104.06	13.687	1	307260			49021	1370	32379	32518	49635	49635					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.3140258789062	2	561.313689	1120.61282	-0.0020904	-1.1733E-06	0.54652	0.00030677	0.54443	0.0003056	561.314056169812	24.784	0.31363	24.784	24.677	24.991	0					16	6	4	0	0	0	0.003936	1	8702	8702		163.15	32.12	1	1474600			49022	1370	32379	32518	49636	49636					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.5447692871094	3	374.544885	1120.61282	0.32047	0.00012003	-0.55476	-0.00020778	-0.23429	-8.7751E-05	374.54461150608665	24.617	0.19904	24.617	24.518	24.717	0					13	4	4	0	0	0	0.034359	1	7691	7691		120.87	55.711	1	1077200			49023	1370	32379	32518	49637	49637					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	374.54473876953125	3	374.544885	1120.61282	-0.12321	-4.6149E-05	0.034187	1.2805E-05	-0.089025	-3.3344E-05	374.5447528136711	24.601	0.2346	24.601	24.506	24.741	0					15	5	4	0	0	0	0.1115	1	7683	7683		93.143	36.422	1	1301200			49024	1370	32379	32518	49638	49638					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.5447692871094	3	374.544885	1120.61282	-0.35355	-0.00013242	-0.0052492	-1.9661E-06	-0.3588	-0.00013439	374.54493585295245	24.731	0.85088	24.731	24.58	25.431	0					35	17	5	0	0	0	0.012915	1	8553	8553		138.06	72.905	1	20381000			49025	1370	32379	32518	49639	49639					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	374.54486083984375	3	374.544885	1120.61282	0.73999	0.00027716	-0.95234	-0.00035669	-0.21234	-7.9532E-05	374.54451823506923	24.715	1.0557	24.715	24.611	25.667	0					56	21	6	0	0	0	0.055856	1	8549	8549		109.48	44.013	1	16179000			49026	1370	32379	32518	49640	49640					0.05734281303239186
VYIHPSSALF	10	Unmodified	_VYIHPSSALF_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.3028564453125	2	567.303124	1132.5917	3.4704	0.0019687	-2.6069	-0.0014789	0.86346	0.00048984	567.3015665946614	42.98	0.20518	42.98	42.862	43.067	0					11	6	2	0	0	0	0.2538	1	17186	17186		71.296	17.944	1	153880			49027	1411	32380	32519	49641	49641					0.030703159943413993
VYIIQAREP	9	Unmodified	_VYIIQAREP_					0	0	0		BRD2|p.H667Y|1|0.4|ENSG00000204256|chr6:32979985-32979985|C/T|missense_variant	BRD2|p.H667Y|1|0.4|ENSG00000204256|chr6:32979985-32979985|C/T|missense_variant	BRD2|p.H667Y|1|0.4|ENSG00000204256|chr6:32979985-32979985|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.8087158203125	2	544.808574	1087.60259	0.32728	0.0001783	0.47426	0.00025838	0.80154	0.00043669	544.808942855193	22.245	0.26405	22.245	22.136	22.4	0					13	5	3	0	0	0	0.38666	1	7512	7512		35.618	14.671	1	295620			49028	318	32381	32520	49642	49642					0.062297183686723656
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.316162109375	2	528.316035	1054.61752	0.10876	5.7458E-05	-0.18604	-9.8287E-05	-0.077282	-4.0829E-05	528.3162961553128	29.19	0.52801	29.19	28.957	29.485	0					39	13	4	0	0	0	0.034359	1	10355	10355		104.75	62.35	1	1169400			49029	1933	32382	32521	49643	49643					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.3162231445312	2	528.316035	1054.61752	0.19363	0.0001023	0.53128	0.00028068	0.72491	0.00038298	528.3162768245633	28.961	0.59457	28.961	28.741	29.335	0					81	23	5	0	0	0	0.01768	2	9324	9324;9473		125.81	75.789	1	3288000			49030	1933	32382	32521	49644;49645	49644					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.316650390625	2	528.316035	1054.61752	1.2494	0.00066007	-0.83642	-0.00044189	0.41297	0.00021818	528.3157826633658	28.976	0.79812	28.976	28.75	29.548	0					55	20	5	0	0	0	0.0086566	2	9640	9640;9810		143.89	69.912	1	2159100			49031	1933	32382	32521	49646;49647	49646					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	352.54644775390625	3	352.546449	1054.61752	-0.079582	-2.8056E-05	-0.079792	-2.813E-05	-0.15937	-5.6187E-05	352.5463722954626	28.967	0.4763	28.967	28.793	29.27	0					37	12	4	0	0	0	0.11118	1	9656	9656		93.195	47.223	1	1267500			49032	1933	32382	32521	49648	49648					0.09239210236660256
VYILLPGDR	9	Unmodified	_VYILLPGDR_					0	0	0		ENST00000426529.6_1_7:30590332-30591084:-|nuORF	ENST00000426529.6_1_7:30590332-30591084:-|nuORF	ENST00000426529.6_1_7:30590332-30591084:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.3057250976562	2	523.305667	1044.59678	0.088451	4.6287E-05	0.78468	0.00041063	0.87313	0.00045691	523.3057886547183	41.807	0.16829	41.807	41.713	41.881	0					13	8	2	0	0	0	0.35045	1	15870	15870		45.952	0	1	77830			49033	9448	32383	32522	49649	49649					0.0762661985700106
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.823974609375	2	552.824224	1103.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.589	1	41.589	41.089	42.089	0								0	0	0	0.03526	1	15801	15801		93.143	31.036	1				49034	5746	32384	32523	49650	49650					0.08622291402753035
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.8240356445312	2	552.824224	1103.63389	1.5927	0.0008805	-0.54559	-0.00030162	1.0471	0.00057888	552.8237153326185	41.558	0.13356	41.558	41.479	41.613	0					9	5	2	0	0	0	0.18416	1	16338	16338		63.534	17.582	1	63521			49035	5746	32384	32523	49651	49651					0.08622291402753035
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.8245849609375	2	552.824224	1103.63389	1.818	0.001005	-0.46943	-0.00025951	1.3485	0.00074551	552.8238916772897	41.492	0.12922	41.492	41.439	41.568	0					5	3	2	0	0	0	0.22837	1	16516	16516		58.23	12.258	1	43627			49036	5746	32384	32523	49652	49652					0.08622291402753035
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.7697143554688	2	542.769114	1083.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.487	1	42.487	41.987	42.987	0								0	0	0	0.13425	1	13509	13509		63.534	3.4156	1				49037	1893	32385	32524	49653	49653					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.7695922851562	2	542.769114	1083.52368	0.3209	0.00017418	0.64933	0.00035244	0.97023	0.00052661	542.7693049486758	42.813	0.2844	42.813	42.725	43.009	0					28	14	3	0	0	0	0.020674	1	16180	16180		120.87	30.499	1	355690			49038	1893	32385	32524	49654	49654					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7691650390625	2	542.769114	1083.52368	2.0399	0.0011072	-1.3576	-0.00073687	0.68223	0.0003703	542.7684485594879	42.764	0.2692	42.764	42.678	42.947	0					24	13	3	0	0	0	0.013878	1	16786	16786		132.76	50.517	1	342400			49039	1893	32385	32524	49655	49655					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7711791992188	2	542.769114	1083.52368	-1.4884	-0.00080787	3.1885	0.0017306	1.7001	0.00092277	542.7708600920997	42.536	0.12066	42.536	42.499	42.62	0					9	7	2	0	0	0	0.12834	1	14851	14851		72.879	19.943	1	35113			49040	1893	32385	32524	49656	49656					-0.014745536562941197
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.7727661132812	2	580.772188	1159.52982	0.66022	0.00038344	-0.088029	-5.1125E-05	0.57219	0.00033231	580.77203311167	29.094	0.34431	29.094	29.018	29.363	0					33	13	3	0	0	0	0.047412	1	9130	9130		68.485	26.089	1	978440			49041	2310	32386	32525	49657	49657					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	387.5171813964844	3	387.517218	1159.52982	0.8594	0.00033303	-0.89305	-0.00034607	-0.033657	-1.3043E-05	387.51689840880954	31.428	0.62619	31.428	31.08	31.707	0					22	15	2	0	0	0	0.54267	1	11431	11431		27.882	2.3082	1	71441			49042	2310	32386	32525	49658	49658					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.7723388671875	2	580.772188	1159.52982	-0.028297	-1.6434E-05	0.40698	0.00023636	0.37868	0.00021993	580.772319992067	29.321	0.61612	29.321	29.196	29.812	0					41	15	4	0	0	0	0.010494	1	10444	10444		111.65	29.408	1	7218100			49043	2310	32386	32525	49659	49659					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.7726440429688	2	580.772188	1159.52982	-0.060503	-3.5138E-05	0.43252	0.0002512	0.37202	0.00021606	580.7724276701125	29.107	0.34958	29.107	29.007	29.357	0					36	14	4	0	0	0	0.010494	1	9429	9429		111.65	58.712	1	1173900			49044	2310	32386	32525	49660	49660					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	387.51715087890625	3	387.517218	1159.52982	0.14875	5.7641E-05	-0.39374	-0.00015258	-0.245	-9.4941E-05	387.5171232093291	29.327	2.6651	29.327	29.195	31.861	0					117	58	5	0	0	0	0.0792	1	10836	10836		84.916	33.723	1	18638000			49045	2310	32386	32525	49661	49661					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.77294921875	2	580.772188	1159.52982	1.5159	0.00088039	-1.0967	-0.00063694	0.41918	0.00024345	580.7718124881131	29.356	0.23447	29.356	29.239	29.473	0					11	5	3	0	0	0	0.087861	1	10861	10861		55.504	0	1	205100			49046	2310	32386	32525	49662	49662					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.7722778320312	2	580.772188	1159.52982	-0.3597	-0.0002089	0.60752	0.00035283	0.24783	0.00014393	580.7724679052699	29.358	1.8514	29.358	29.226	31.077	0					67	40	5	0	0	0	0.0012031	3	10831	10831;11010;11196		152.63	70.393	1	9146700			49047	2310	32386	32525	49663;49664;49665	49663					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	387.5172119140625	3	387.517218	1159.52982	-0.14886	-5.7685E-05	0.089483	3.4676E-05	-0.059376	-2.3009E-05	387.51723578501736	29.145	0.57401	29.145	29.054	29.628	0					41	15	4	0	0	0	0.16002	1	9747	9747		66.429	28.921	1	4247700			49048	2310	32386	32525	49666	49666					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.51708984375	3	387.517218	1159.52982	0.53372	0.00020683	-1.0608	-0.00041109	-0.5271	-0.00020426	387.5171102835629	29.249	3.7323	29.249	29.143	32.875	0					190	75	5	0	0	0	0.12239	2	10680	10680;10869		74.255	23.062	1	63578000			49049	2310	32386	32525	49667;49668	49667					-0.043560354247802024
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.77410888671875	2	496.7742	991.533846	-0.059329	-2.9473E-05	-0.11325	-5.626E-05	-0.17258	-8.5734E-05	496.774083000907	40.717	0.1805	40.717	40.634	40.814	0					21	11	2	0	0	0	0.1424	1	13131	13131		69.628	4.1622	1	225190			49050	2827	32387	32526	49669	49669					0.037740540689469526
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.77423095703125	2	496.7742	991.533846	-0.32899	-0.00016343	0.063349	3.147E-05	-0.26564	-0.00013196	496.7741934874387	41.054	0.32977	41.054	40.96	41.289	0					42	15	4	0	0	0	0.087861	1	15598	15598		82.241	27.476	1	1089100			49051	2827	32387	32526	49670	49670					0.037740540689469526
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	496.7754211425781	2	496.7742	991.533846	-1.1751	-0.00058376	0.69274	0.00034413	-0.48237	-0.00023963	496.77462972355767	40.817	0.24444	40.817	40.743	40.987	0					11	8	2	0	0	0	0.12239	1	13635	13635		74.255	16.444	1	101790			49052	2827	32387	32526	49671	49671					0.037740540689469526
VYITRAQLM	9	Unmodified	_VYITRAQLM_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	547.8063354492188	2	547.804977	1093.5954	0.4699	0.00025742	-0.16062	-8.7988E-05	0.30928	0.00016943	547.8052268098999	37.101	0.1531	37.101	37.026	37.179	0					7	4	2	0	0	0	0.34452	1	14034	14034		46.457	2.34	1	172950			49053	5390	32388	32527	49672	49672					0.052346624965593946
VYITRAQLM	9	Unmodified	_VYITRAQLM_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.8050537109375	2	547.804977	1093.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.022	1	37.022	36.522	37.522	0								0	0	0	0.061959	1	14438	14438		82.75	3.0379	1				49054	5390	32388	32527	49673	49673					0.052346624965593946
VYKCLSENI	9	Carbamidomethyl (C)	_VYKC(Carbamidomethyl (C))LSENI_	VYKC(1)LSENI		VYKC(58)LSENI		0	1	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.28466796875	2	563.284074	1124.5536	1.2578	0.00070852	-1.1673	-0.00065752	0.090529	5.0994E-05	563.2833125841823	32.223	0.25606	32.223	32.142	32.398	0					17	11	2	0	0	0	0.22823	1	10403	10403		58.246	17.468	1	113800			49055	1685	32389	32528	49674	49674	70				-0.003699379826002769
VYKCLSENI	9	Carbamidomethyl (C)	_VYKC(Carbamidomethyl (C))LSENI_	VYKC(1)LSENI		VYKC(130)LSENI		0	1	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.2844848632812	2	563.284074	1124.5536	0.43182	0.00024323	0.11515	6.4863E-05	0.54697	0.0003081	563.2841824024172	32.462	0.379	32.462	32.369	32.748	0					21	9	4	0	0	0	0.015496	1	11923	11923		129.42	52.647	1	983560			49056	1685	32389	32528	49675	49675	70				-0.003699379826002769
VYKCLSENI	9	Carbamidomethyl (C)	_VYKC(Carbamidomethyl (C))LSENI_	VYKC(1)LSENI		VYKC(55)LSENI		0	1	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.2840576171875	2	563.284074	1124.5536	0.13216	7.4443E-05	0.38744	0.00021824	0.51959	0.00029268	563.2840813677684	32.274	0.18033	32.274	32.209	32.39	0					13	8	2	0	0	0	0.25761	1	10756	10756		54.722	8.7501	1	184400			49057	1685	32389	32528	49676	49676	70				-0.003699379826002769
VYKCLSENI	9	Carbamidomethyl (C)	_VYKC(Carbamidomethyl (C))LSENI_	VYKC(1)LSENI		VYKC(140)LSENI		0	1	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.2843627929688	2	563.284074	1124.5536	1.873	0.001055	-1.5231	-0.00085792	0.34993	0.00019711	563.2832792618909	32.453	0.29103	32.453	32.359	32.65	0					19	7	3	0	0	0	0.012231	1	12346	12346		136.27	26.148	1	1079100			49058	1685	32389	32528	49677	49677	70				-0.003699379826002769
VYKCLSENI	9	Carbamidomethyl (C)	_VYKC(Carbamidomethyl (C))LSENI_	VYKC(1)LSENI		VYKC(70)LSENI		0	1	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.2852783203125	2	563.284074	1124.5536	0.083311	4.6927E-05	1.1806	0.00066503	1.2639	0.00071196	563.2846531966655	32.474	0.13858	32.474	32.385	32.524	0					5	3	2	0	0	0	0.1424	1	12341	12341		69.628	9.6968	1	59789			49059	1685	32389	32528	49678	49678	70				-0.003699379826002769
VYKCLSENI	9	Carbamidomethyl (C)	_VYKC(Carbamidomethyl (C))LSENI_	VYKC(1)LSENI		VYKC(65)LSENI		0	1	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.28466796875	2	563.284074	1124.5536	-1.0152	-0.00057184	1.9591	0.0011036	0.94395	0.00053171	563.2851429368386	32.273	0.19748	32.273	32.188	32.386	0					11	5	3	0	0	0	0.16806	1	11211	11211		65.465	19.009	1	149280			49060	1685	32389	32528	49679	49679	70				-0.003699379826002769
VYKETCISF	9	Carbamidomethyl (C)	_VYKETC(Carbamidomethyl (C))ISF_	VYKETC(1)ISF		VYKETC(67)ISF		0	1	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.7789306640625	2	573.778625	1145.5427	-0.11791	-6.7656E-05	1.0317	0.00059197	0.91379	0.00052432	573.7794178972007	37.255	0.29245	37.255	37.131	37.423	0					15	8	3	0	0	0	0.15163	1	14117	14117		67.494	19.836	1	229800			49061	3501	32390	32529	49680	49680	146				-0.024253403568991416
VYKETCISF	9	Carbamidomethyl (C)	_VYKETC(Carbamidomethyl (C))ISF_	VYKETC(1)ISF		VYKETC(94)ISF		0	1	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.7791748046875	2	573.778625	1145.5427	1.9872	0.0011402	-1.9522	-0.0011201	0.034956	2.0057E-05	573.777469949219	37.196	0.27205	37.196	37.12	37.392	0					14	8	2	0	0	0	0.054723	1	14542	14542		93.598	38.821	1	387420			49062	3501	32390	32529	49681	49681	146				-0.024253403568991416
VYKETCISF	9	Carbamidomethyl (C)	_VYKETC(Carbamidomethyl (C))ISF_	VYKETC(1)ISF		VYKETC(64)ISF		0	1	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.7797241210938	2	573.778625	1145.5427	-1.4809	-0.0008497	2.0044	0.0011501	0.52346	0.00030035	573.7804677227498	37.002	0.15868	37.002	36.914	37.073	0					9	6	2	0	0	0	0.18416	1	13261	13261		63.534	10.445	1	41734			49063	3501	32390	32529	49682	49682	146				-0.024253403568991416
VYKETCISF	9	Carbamidomethyl (C)	_VYKETC(Carbamidomethyl (C))ISF_	VYKETC(1)ISF		VYKETC(88)ISF		0	1	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.779296875	2	573.778625	1145.5427	3.3532	0.001924	-2.0776	-0.0011921	1.2756	0.00073192	573.7774234311067	37.145	0.60136	37.145	37.04	37.642	0					18	12	2	0	0	0	0.070005	1	14507	14507		88.177	33.401	1	1067100			49064	3501	32390	32529	49683	49683	146				-0.024253403568991416
VYKETCISF	9	Unmodified	_VYKETCISF_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2682495117188	2	545.267893	1088.52123	3.7268	0.0020321	-1.7003	-0.00092715	2.0265	0.001105	545.2671842152283	39.413	1.025	39.413	39.317	40.342	0					33	23	3	0	0	0	0.18416	1	15585	15585		63.534	10.182	1	421370			49065	3501	32390	32530	49684	49684					-0.01948725385614125
VYKGEEATF	9	Unmodified	_VYKGEEATF_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2559814453125	2	522.25584	1042.49713	1.6248	0.00084855	0.15675	8.1862E-05	1.7815	0.00093041	522.255341920137	28.351	0.56642	28.351	28.294	28.86	0					23	11	3	0	0	0	0.095583	1	10275	10275		80.455	28.155	1	754570			49066	1541	32391	32531	49685	49685					-0.022422425476406715
VYKGTDLVA	9	Unmodified	_VYKGTDLVA_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2735290527344	2	483.26875	964.522947	-0.15203	-7.3472E-05	0.63224	0.00030554	0.48021	0.00023207	483.269072406481	40.561	0.45626	40.561	40.325	40.781	0					43	19	3	0	0	0	0.38666	1	15394	15394		53.351	12.573	1	1830300	+		49067	14957	32392	32532	49686	49686					0.039266516946554475
VYKIERVFL	9	Unmodified	_VYKIERVFL_					0	0	0		ENST00000589189.5_1_18:33289914-33290001:+|nuORF	ENST00000589189.5_1_18:33289914-33290001:+|nuORF	ENST00000589189.5_1_18:33289914-33290001:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	389.5694885253906	3	389.569253	1165.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.455	1	46.455	45.955	46.955	0								0	0	0	0.3428	1	17856	17856		26.693	4.733	1				49068	10936	32393	32533	49687	49687					0.10971454816535697
VYKIERVFL	9	Unmodified	_VYKIERVFL_					0	0	0		ENST00000589189.5_1_18:33289914-33290001:+|nuORF	ENST00000589189.5_1_18:33289914-33290001:+|nuORF	ENST00000589189.5_1_18:33289914-33290001:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	389.5690612792969	3	389.569253	1165.68593	0.50111	0.00019522	-0.60698	-0.00023646	-0.10587	-4.1245E-05	389.5690305930748	46.366	0.098095	46.366	46.329	46.427	0					8	4	3	0	0	0	0.60749	1	18554	18554		20.947	1.6843	1	49416			49069	10936	32393	32533	49688	49688					0.10971454816535697
VYKILSTHL	9	Unmodified	_VYKILSTHL_					0	0	0		CLOCK|p.N189Kfs*23|1|0.31|ENSG00000134852|chr4:55459254-55459255|-/T|frameshift_variant;ENSG00000134852|ENST00000513440|CLOCK	CLOCK|p.N189Kfs*23|1|0.31|ENSG00000134852|chr4:55459254-55459255|-/T|frameshift_variant	CLOCK|p.N189Kfs*23|1|0.31|ENSG00000134852|chr4:55459254-55459255|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3215942382812	2	537.321317	1072.62808	0.29367	0.0001578	0.090372	4.8559E-05	0.38404	0.00020635	537.3211715956469	34.956	0.15259	34.956	34.912	35.064	0					5	4	2	0	0	0	0.3269	1	13520	13520		40.778	2.9666	1	40583			49070	559	32394	32534	49689	49689					0.09467192891088416
VYKKEELI	8	Unmodified	_VYKKEELI_					0	0	0		tr|U7SM03|U7SM03_FUSNUCupintype-2domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02038PE=4SV=1	tr|U7SM03|U7SM03_FUSNUCupintype-2domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02038PE=4SV=1	tr|U7SM03|U7SM03_FUSNUCupintype-2domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02038PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2997741699219	2	511.30005	1020.58555	1.2205	0.00062406	-0.22504	-0.00011506	0.9955	0.000509	511.2999189475526	43.458	0.26899	43.458	43.345	43.614	0					22	14	2	0	0	0	0.64096	1	16972	16972		42.474	0.078325	1	272310			49071	22652	32395	32535	49690	49690					0.07607797762852897
VYKLCTQTI	9	Carbamidomethyl (C)	_VYKLC(Carbamidomethyl (C))TQTI_	VYKLC(1)TQTI		VYKLC(130)TQTI		0	1	0		ENST00000570041.1_2_16:53532500-53534232:-|nuORF	ENST00000570041.1_2_16:53532500-53534232:-|nuORF	ENST00000570041.1_2_16:53532500-53534232:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.3026123046875	2	563.302267	1124.58998	0.091683	5.1645E-05	0.42263	0.00023807	0.51431	0.00028971	563.3024406894007	34.249	0.2116	34.249	34.161	34.373	0					12	5	3	0	0	0	0.012936	1	13197	13197		134.77	52.015	1	304080			49072	10790	32396	32536	49691	49691	438				0.03266938914111961
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7775268554688	2	546.777274	1091.53999	1.2179	0.00066591	-1.0873	-0.0005945	0.13061	7.1413E-05	546.7768816084986	28.863	0.23162	28.863	28.746	28.978	0					16	7	3	0	0	0	0.17854	1	9040	9040		64.207	10.856	1	126120			49073	5811	32397	32537	49692	49692					-0.002114276995371256
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7781372070312	2	546.777274	1091.53999	0.44199	0.00024167	-0.46445	-0.00025395	-0.022469	-1.2286E-05	546.7776385700572	29.127	0.64987	29.127	28.835	29.485	0					34	16	3	0	0	0	0.048471	1	10357	10357		95.815	27.028	1	855730			49074	5811	32397	32537	49693	49693					-0.002114276995371256
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.2794189453125	2	546.777274	1091.53999	0.46078	0.00025194	-2.47	-0.0013505	-2.0092	-0.0010986	546.776007165715	28.912	0.34501	28.912	28.769	29.114	0					33	13	3	0	0	0	0.10915	1	9337	9337		77.318	20.597	1	370080			49075	5811	32397	32537	49694	49694					-0.002114276995371256
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.777587890625	2	546.777274	1091.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.132	1	29.132	28.632	29.632	0								0	0	0	0.012693	1	10753	10753		106.68	49.962	1				49076	5811	32397	32537	49695	49695					-0.002114276995371256
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7774658203125	2	546.777274	1091.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.897	1	28.897	28.397	29.397	0								0	0	0	0.04624	1	9653	9653		87.696	32.92	1				49077	5811	32397	32537	49696	49696					-0.002114276995371256
VYKTIMEQF	9	Unmodified	_VYKTIMEQF_					0	0	0		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;BAIAP2|p.D470Ifs*41|1|0.42|ENSG00000175866|chr17:81106809-81106809|C/-|frameshift_variant;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.7969360351562	2	579.796817	1157.57908	1.5766	0.00091408	-1.1613	-0.00067334	0.41523	0.00024075	579.7962020257181	42.744	0.16051	42.744	42.678	42.839	0					16	7	3	0	0	0	0.10506	1	16766	16766		78.264	31.807	1	81251			49078	274	32398	32538	49697	49697					0.006595365398197828
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.3080139160156	2	502.810585	1003.60662	-0.068148	-3.4266E-05	-4.3045	-0.0021643	-4.3726	-0.0021986	502.81062497915855	42.093	0.49863	42.093	41.938	42.437	0					37	25	2	0	0	0	0.030949	1	15956	15956		108.09	45.98	1	422000			49079	6989	32399	32539	49698	49698					0.10495807862389483
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.8099060058594	2	502.810585	1003.60662	-0.90078	-0.00045292	0.36343	0.00018274	-0.53734	-0.00027018	502.81077985267865	41.877	0.21837	41.877	41.811	42.029	0					18	13	2	0	0	0	0.18605	1	13852	13852		63.306	8.53	1	136300			49080	6989	32399	32539	49699	49699					0.10495807862389483
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.3119812011719	2	502.810585	1003.60662	-2.0619	-0.0010367	1.6698	0.00083959	-0.39208	-0.00019714	502.81150647482355	41.815	0.15437	41.815	41.775	41.93	0					16	9	2	0	0	0	0.03984	1	14689	14689		99.375	44.599	1	74533			49081	6989	32399	32539	49700	49700					0.10495807862389483
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.8103942871094	2	502.810585	1003.60662	1.1617	0.00058414	-1.1238	-0.00056505	0.037963	1.9088E-05	502.8099560822199	42.028	0.28761	42.028	41.942	42.229	0					16	7	3	0	0	0	0.030949	1	16739	16739		108.09	44.781	1	401430			49082	6989	32399	32539	49701	49701					0.10495807862389483
VYLLHKQDF	9	Unmodified	_VYLLHKQDF_					0	0	0			REV__ENST00000324817.5_1_X:40510337-40510415:-|nuORF	REV__ENST00000324817.5_1_X:40510337-40510415:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	388.21435546875	3	388.213358	1161.61824	0.86373	0.00033531	-1.9578	-0.00076005	-1.0941	-0.00042474	388.21407648044703	32.055	0.81584	32.055	31.779	32.595	0					46	20	3	0	0	0	0.39215	1	11652	11652		42.396	1.618	1	321010	+		49083	18349	32400	32540	49702	49702					0.04390004885704002
VYLLNSTTL	9	Unmodified	_VYLLNSTTL_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.2896728515625	2	512.289682	1022.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.749	1	50.749	50.249	51.249	0								0	0	0	0.23459	1	19961	19961		45.952	1.8352	1				49084	11478	32401	32541	49703	49703					0.05443207383189019
VYLLVRKTG	9	Unmodified	_VYLLVRKTG_					0	0	0			REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8273315429688	2	524.829309	1047.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.602	1	55.602	55.102	56.102	0								0	0	0	0.35507	1	19240	19240		24.203	1.1603	1		+		49085	13330	32402	32542	49704	49704					0.12214899127980061
VYLNKLKTV	9	Unmodified	_VYLNKLKTV_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	359.8937072753906	3	359.893737	1076.65938	0.48292	0.0001738	-0.8778	-0.00031591	-0.39487	-0.00014211	359.89346700694455	31.077	0.27044	31.077	30.982	31.253	0					11	6	2	0	0	0	0.47473	1	11264	11264		35.152	4.6484	1	539350			49086	11514	32403	32543	49705	49705					0.12411765925162399
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.3214721679688	2	537.321317	1072.62808	0.21284	0.00011436	0.66896	0.00035944	0.8818	0.00047381	537.3216994957518	42.826	0.16164	42.826	42.773	42.935	0					14	8	2	0	0	0	0.36892	1	16195	16195		45.952	13.997	1	177040			49087	1491	32404	32544	49706	49706					0.09467192891088416
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.3222045898438	2	537.321317	1072.62808	1.8834	0.001012	-1.754	-0.00094244	0.12941	6.9534E-05	537.3208334688899	42.836	0.23199	42.836	42.678	42.91	0					26	11	4	0	0	0	0.28897	1	16775	16775		63.306	13.865	1	413880			49088	1491	32404	32544	49707	49707					0.09467192891088416
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7822875976562	2	515.782025	1029.5495	-0.50761	-0.00026182	0.20194	0.00010416	-0.30568	-0.00015766	515.7820650033309	36.239	0.41341	36.239	36.041	36.455	0					18	12	3	0	0	0	0.18605	1	14084	14084		63.306	9.9548	1	1583100			49089	1010	32405	32545	49708	49708					0.035903405860153725
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7802734375	2	515.782025	1029.5495	-1.5315	-0.00078994	-3.6801	-0.0018982	-5.2117	-0.0026881	515.7806295167487	32.793	0.33953	32.793	32.623	32.963	0					17	9	3	0	0	0	0.32741	1	11415	11415		47.916	9.1095	1	91635			49090	1010	32405	32545	49709	49709					0.035903405860153725
VYLRRKSR	8	Unmodified	_VYLRRKSR_					0	0	0		ENSG00000071242|ENST00000265678|RPS6KA2;RPS6KA2|p.H197Afs*3|1|0.32|ENSG00000071242|chr6:166500902-166500903|-/C|frameshift_variant	ENSG00000071242|ENST00000265678|RPS6KA2	ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	359.8936767578125	3	359.892842	1076.6567	3.0982	0.001115	-0.82726	-0.00029773	2.2709	0.00081728	359.8925933286544	31.02	0.31236	31.02	30.946	31.258	0					8	6	2	0	0	0	0.67394	1	11557	11557		37.159	0	1	624290			49091	1471	32406	32546	49710	49710					0.12143355310877268
VYLVRMDP	8	Unmodified	_VYLVRMDP_					0	0	0		USP15|p.R760Kfs*4|2|0.23|ENSG00000135655|chr12:62391853-62391854|-/A|frameshift_variant;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;USP15|p.P943Lfs*17|1|0.43|ENSG00000135655|chr12:62404250-62404250|T/-|frameshift_variant;ENSG00000135655|ENST00000280377|USP15	USP15|p.R760Kfs*4|2|0.23|ENSG00000135655|chr12:62391853-62391854|-/A|frameshift_variant	USP15|p.R760Kfs*4|2|0.23|ENSG00000135655|chr12:62391853-62391854|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2662048339844	2	496.76532	991.516088	-2.3288	-0.0011568	-0.66473	-0.00033021	-2.9935	-0.0014871	496.76475994223955	37.58	0.3782	37.58	37.463	37.841	0					48	18	4	0	0	0	0.61938	1	13433	13433		45.952	5.3793	1	869910			49092	4011	32407	32547	49711	49711					0.01999015542435245
VYMELSQKL	9	Unmodified	_VYMELSQKL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;FRMD6|p.K193Rfs*5|1|0.41|ENSG00000139926|chr14:51708091-51708091|G/-|frameshift_variant	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7970581054688	2	555.796817	1109.57908	0.58012	0.00032243	-0.13691	-7.6095E-05	0.44321	0.00024634	555.7968008574312	39.431	0.17072	39.431	39.365	39.535	0					12	6	2	0	0	0	0.085655	1	15019	15019		82.75	31.415	1	246180			49093	4360	32408	32548	49712	49712					0.028675365398157737
VYMELSQKL	9	Unmodified	_VYMELSQKL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;FRMD6|p.K193Rfs*5|1|0.41|ENSG00000139926|chr14:51708091-51708091|G/-|frameshift_variant	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7969970703125	2	555.796817	1109.57908	-0.094204	-5.2358E-05	1.0459	0.00058131	0.9517	0.00052895	555.7972327193538	39.393	0.22002	39.393	39.319	39.539	0					11	7	2	0	0	0	0.28897	1	15499	15499		51.193	13.381	1	111140			49094	4360	32408	32548	49713	49713					0.028675365398157737
VYMGDKTKWI	10	Unmodified	_VYMGDKTKWI_					0	0	0		ERMAP|p.V299M|1|0.31|ENSG00000164010|chr1:42842699-42842699|G/A|missense_variant	ERMAP|p.V299M|1|0.31|ENSG00000164010|chr1:42842699-42842699|G/A|missense_variant	ERMAP|p.V299M|1|0.31|ENSG00000164010|chr1:42842699-42842699|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.21875	3	414.218003	1239.63218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.348	1	41.348	40.848	41.848	0								0	0	0	0.38475	1	16442	16442		35.152	5.982	1				49095	11117	32409	32549	49714	49714					0.021949143225128864
VYMNRVKEI	9	Unmodified	_VYMNRVKEI_					0	0	0		ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.3158569335938	2	576.315709	1150.61686	-1.5767	-0.0009087	1.8497	0.001066	0.27291	0.00015728	576.3167272194853	26.729	0.19547	26.729	26.625	26.82	0					9	4	3	0	0	0	0.17854	1	8654	8654		64.207	36.325	1	163970			49096	7437	32410	32550	49715	49715					0.04758047525319853
VYMNVYFL	8	Unmodified	_VYMNVYFL_					0	0	0			REV__ENSG00000174944|ENST00000309170|P2RY14	REV__ENSG00000174944|ENST00000309170|P2RY14	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7646484375	2	524.762246	1047.50994	3.4374	0.0018038	1.1962	0.00062771	4.6336	0.0024315	524.7628582604206	34.709	1.0621	34.709	34.506	35.568	0					53	21	4	0	0	0	0.34071	1	13316	13316		77.944	19.162	1	15715000	+		49097	16592	32411	32551	49716	49716					-0.011915026890619629
VYMPVVDII	9	Unmodified	_VYMPVVDII_					0	0	0			REV__ZSCAN12|p.K467Nfs*109|1|0.22|ENSG00000158691|chr6:28390889-28390889|T/-|frameshift_variant	REV__ZSCAN12|p.K467Nfs*109|1|0.22|ENSG00000158691|chr6:28390889-28390889|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7932739257812	2	524.791004	1047.56745	3.4354	0.0018029	0.89905	0.00047181	4.3345	0.0022747	524.7914748884226	26.319	0.46958	26.319	26.117	26.587	0					15	9	2	0	0	0	0.23186	1	9299	9299		57.811	5.5121	1	1560100	+		49098	22338	32412	32552	49717	49717					0.045573395165092734
VYMVRAINL	9	Unmodified	_VYMVRAINL_					0	0	0		nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5;ENSG00000249715|ENST00000624922|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.8112182617188	2	539.807519	1077.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.779	1	43.779	43.279	44.279	0								0	0	0	0.22106	1	17532	17532		47.916	0	1				49099	7984	32413	32553	49718	49718					0.06478966359190963
VYMVTQGRK	9	Unmodified	_VYMVTQGRK_					0	0	0		GRB7|p.V285M|1|0.36|ENSG00000141738|chr17:39744604-39744604|G/A|missense_variant	GRB7|p.V285M|1|0.36|ENSG00000141738|chr17:39744604-39744604|G/A|missense_variant	GRB7|p.V285M|1|0.36|ENSG00000141738|chr17:39744604-39744604|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.1988220214844	3	361.198943	1080.575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.286	1	16.286	15.786	16.786	0								0	0	0	0.27166	1	3875	3875		56.721	25.087	1				49100	11165	32414	32554	49719	49719					0.03793491836790963
VYNENLVHM	9	Unmodified	_VYNENLVHM_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.7703247070312	2	559.768591	1117.52263	1.431	0.00080102	1.1741	0.0006572	2.605	0.0014582	559.7689959775894	35.862	0.084251	35.862	35.821	35.905	0					6	4	2	0	0	0	0.087861	1	11762	11762		82.241	37.863	1	51502			49101	3002	32415	32555	49720	49720					-0.031430912968289704
VYNENLVHM	9	Unmodified	_VYNENLVHM_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.7688598632812	2	559.768591	1117.52263	1.7964	0.0010056	-1.3933	-0.00077992	0.40314	0.00022567	559.7678704021823	36.132	0.16449	36.132	36.057	36.222	0					10	4	3	0	0	0	0.010494	1	13599	13599		139.97	71.184	1	269250			49102	3002	32415	32555	49721	49721					-0.031430912968289704
VYNENLVHM	9	Unmodified	_VYNENLVHM_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7695922851562	2	559.768591	1117.52263	1.3993	0.00078326	0.17448	9.7667E-05	1.5737	0.00088092	559.768379791088	36.067	0.16992	36.067	35.979	36.149	0					5	3	2	0	0	0	0.056004	1	13980	13980		93.143	48.766	1	101000			49103	3002	32415	32555	49722	49722					-0.031430912968289704
VYNENLVHM	9	Unmodified	_VYNENLVHM_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7688598632812	2	559.768591	1117.52263	1.8255	0.0010218	-1.9442	-0.0010883	-0.11876	-6.6478E-05	559.7679946481888	36.073	0.46431	36.073	35.963	36.428	0					19	9	3	0	0	0	0.0080613	1	13972	13972		145.16	93.82	1	705150			49104	3002	32415	32555	49723	49723					-0.031430912968289704
VYNENLVHM	9	Unmodified	_VYNENLVHM_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7692260742188	2	559.768591	1117.52263	3.4696	0.0019422	0.75475	0.00042249	4.2243	0.0023647	559.7697822056256	36.115	0.26893	36.115	35.996	36.265	0					12	5	3	0	0	0	0.07136	1	13989	13989		87.696	30.975	1	346600			49105	3002	32415	32555	49724	49724					-0.031430912968289704
VYNENLVHMI	10	Unmodified	_VYNENLVHMI_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	616.3108520507812	2	616.310623	1230.60669	-0.56761	-0.00034982	1.0702	0.00065958	0.5026	0.00030976	616.3114524064094	43.988	0.15692	43.988	43.935	44.092	0					9	8	2	0	0	0	0.52275	1	16552	16552		42.864	11.334	1	54000			49106	3002	32416	32556	49725	49725					0.0006143980008346261
VYNENLVHMI	10	Unmodified	_VYNENLVHMI_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	616.3108520507812	2	616.310623	1230.60669	1.0531	0.00064907	-0.83362	-0.00051377	0.21953	0.0001353	616.3101875297783	43.974	0.19546	43.974	43.871	44.067	0					20	9	3	0	0	0	0.12763	1	17155	17155		90.601	25.135	1	132670			49107	3002	32416	32556	49726	49726					0.0006143980008346261
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8195190429688	2	543.818941	1085.62333	0.34913	0.00018986	0.97297	0.00052912	1.3221	0.00071898	543.8194172035381	31.975	0.28986	31.975	31.849	32.139	0					11	7	2	0	0	0	0.028876	1	11682	11682		110.12	56.768	1	385760			49108	5877	32417	32557	49727	49727					0.08394308748324875
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.8204345703125	2	543.818941	1085.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.756	1	31.756	31.256	32.256	0								0	0	0	0.21054	1	10550	10550		49.442	16.629	1				49109	5877	32417	32557	49728	49728					0.08394308748324875
VYNNNSSRF	9	Unmodified	_VYNNNSSRF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	551.261962890625	2	550.759612	1099.50467	1.5271	0.00084105	-0.3046	-0.00016776	1.2225	0.00067329	550.7596329472876	22.9	0.16716	22.9	22.812	22.979	0					11	5	3	0	0	0	0.22837	1	6565	6565		58.23	12.258	1	141710			49110	4676	32418	32558	49729	49729					-0.04110090227322871
VYNNNSSRF	9	Unmodified	_VYNNNSSRF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.7601318359375	2	550.759612	1099.50467	1.8313	0.0010086	-0.82838	-0.00045624	1.003	0.00055239	550.7592514592702	23.225	0.4044	23.225	23.134	23.538	0					18	9	3	0	0	0	0.022525	1	7668	7668		117.81	56.839	1	1248700			49111	4676	32418	32558	49730	49730					-0.04110090227322871
VYNNNSSRF	9	Unmodified	_VYNNNSSRF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.760498046875	2	550.759612	1099.50467	0.30697	0.00016907	0.3814	0.00021006	0.68837	0.00037913	550.7603800599468	22.953	0.21984	22.953	22.878	23.098	0					11	7	2	0	0	0	0.063171	1	6832	6832		90.601	13.754	1	160400			49112	4676	32418	32558	49731	49731					-0.04110090227322871
VYNNNSSRF	9	Unmodified	_VYNNNSSRF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	550.7607421875	2	550.759612	1099.50467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.018	1	23.018	22.518	23.518	0								0	0	0	0.040385	1	6955	6955		90.601	29.629	1				49113	4676	32418	32558	49732	49732					-0.04110090227322871
VYNNNSSRF	9	Unmodified	_VYNNNSSRF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.760009765625	2	550.759612	1099.50467	0.6501	0.00035805	0.018486	1.0181E-05	0.66858	0.00036823	550.7595321813274	23.142	0.26355	23.142	23.038	23.301	0					10	5	3	0	0	0	0.095583	1	7814	7814		80.455	24.95	1	485040			49114	4676	32418	32558	49733	49733					-0.04110090227322871
VYNPTPNSL	9	Unmodified	_VYNPTPNSL_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;nc|ENSG00000111799|Q99715-2|COL12A1	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7558898925781	2	502.756007	1003.49746	-0.048493	-2.438E-05	-0.17738	-8.9177E-05	-0.22587	-0.00011356	502.756015390425	35.778	0.24845	35.778	35.67	35.918	0					20	12	2	0	0	0	0.21263	1	11712	11712		60.118	24.5	1	95642			49115	594	32419	32559	49734	49734					-0.0041482282778133595
VYNPTPNSL	9	Unmodified	_VYNPTPNSL_					0	0	0		COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;nc|ENSG00000111799|Q99715-2|COL12A1	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7562561035156	2	502.756007	1003.49746	0.99076	0.00049811	-0.64104	-0.00032229	0.34972	0.00017582	502.7553432990041	36.019	0.40113	36.019	35.853	36.254	0					26	12	3	0	0	0	0.035062	1	13994	13994		104.06	24.606	1	531730			49116	594	32419	32559	49735	49735					-0.0041482282778133595
VYNPVRAEW	9	Unmodified	_VYNPVRAEW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2902221679688	2	567.290548	1132.56654	1.6748	0.00095009	-2.5519	-0.0014477	-0.87712	-0.00049758	567.2891150826276	38.973	0.47858	38.973	38.778	39.256	0					15	10	3	0	0	0	0.22837	1	15377	15377		58.23	10.314	1	256370			49117	5811	32420	32560	49736	49736					0.005562611917866889
VYNQLLGAGL	10	Unmodified	_VYNQLLGAGL_					0	0	0			REV__nc|ENSG00000105281|Q15758-3|SLC1A5	REV__nc|ENSG00000105281|Q15758-3|SLC1A5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2958984375	2	524.295299	1046.57605	0.56541	0.00029644	0.38785	0.00020335	0.95326	0.00049979	524.2952512421908	34.452	0.17477	34.452	34.399	34.573	0					11	7	3	0	0	0	0.357	1	11624	11624		60.972	6.1956	1	158780	+		49118	13765	32421	32561	49737	49737					0.05462029477325814
VYNQPGHQF	9	Unmodified	_VYNQPGHQF_					0	0	0		FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant;FER1L6|p.G1237Afs*10|1|0.35|ENSG00000214814|chr8:124067790-124067790|A/-|frameshift_variant;FER1L6|p.N1273Tfs*23|1|0.44|ENSG00000214814|chr8:124069454-124069454|C/-|frameshift_variant;FER1L6|p.F1321Lfs*26|1|0.16|ENSG00000214814|chr8:124070594-124070595|-/GTTGAATTCAC|frameshift_variant;FER1L6|p.D1516Gfs*3|1|0.06|ENSG00000214814|chr8:124091575-124091576|-/G|frameshift_variant;ENSG00000214814|ENST00000522917|FER1L6	FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant	FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	545.2595825195312	2	545.259248	1088.50394	1.1876	0.00064756	0.21271	0.00011598	1.4003	0.00076354	545.2588962069351	25.359	0.12434	25.359	25.292	25.416	0					7	4	2	0	0	0	0.45358	1	7622	7622		37.159	3.6661	1	33866			49119	7819	32422	32562	49738	49738					-0.03676884876381337
VYNQPGHQF	9	Unmodified	_VYNQPGHQF_					0	0	0		FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant;FER1L6|p.G1237Afs*10|1|0.35|ENSG00000214814|chr8:124067790-124067790|A/-|frameshift_variant;FER1L6|p.N1273Tfs*23|1|0.44|ENSG00000214814|chr8:124069454-124069454|C/-|frameshift_variant;FER1L6|p.F1321Lfs*26|1|0.16|ENSG00000214814|chr8:124070594-124070595|-/GTTGAATTCAC|frameshift_variant;FER1L6|p.D1516Gfs*3|1|0.06|ENSG00000214814|chr8:124091575-124091576|-/G|frameshift_variant;ENSG00000214814|ENST00000522917|FER1L6	FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant	FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.2595825195312	2	545.259248	1088.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.641	1	25.641	25.141	26.141	0								0	0	0	0.029117	1	8787	8787		96.19	0.14962	1				49120	7819	32422	32562	49739	49739					-0.03676884876381337
VYNQPGHQF	9	Unmodified	_VYNQPGHQF_					0	0	0		FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant;FER1L6|p.G1237Afs*10|1|0.35|ENSG00000214814|chr8:124067790-124067790|A/-|frameshift_variant;FER1L6|p.N1273Tfs*23|1|0.44|ENSG00000214814|chr8:124069454-124069454|C/-|frameshift_variant;FER1L6|p.F1321Lfs*26|1|0.16|ENSG00000214814|chr8:124070594-124070595|-/GTTGAATTCAC|frameshift_variant;FER1L6|p.D1516Gfs*3|1|0.06|ENSG00000214814|chr8:124091575-124091576|-/G|frameshift_variant;ENSG00000214814|ENST00000522917|FER1L6	FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant	FER1L6|p.E470Gfs*8|2|0.42|ENSG00000214814|chr8:123980801-123980802|-/C|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	545.25927734375	2	545.259248	1088.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.423	1	25.423	24.923	25.923	0								0	0	0	0.14517	1	7908	7908		60.972	5.4677	1				49121	7819	32422	32562	49740	49740					-0.03676884876381337
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;PTK7|p.R964H|1|0.36|ENSG00000112655|chr6:43159805-43159805|G/A|missense_variant	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.2644653320312	2	611.264196	1220.51384	-0.76943	-0.00047032	1.128	0.00068952	0.35859	0.00021919	611.265062530095	38.895	0.084728	38.895	38.863	38.948	0					6	3	2	0	0	0	0.17854	1	14795	14795		64.207	24.954	1	84825			49122	2751	32423	32563	49741	49741					-0.08759741661674525
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;PTK7|p.R964H|1|0.36|ENSG00000112655|chr6:43159805-43159805|G/A|missense_variant	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	611.264892578125	2	611.264196	1220.51384	0.90311	0.00055204	-0.73087	-0.00044675	0.17224	0.00010528	611.2636525721803	38.854	0.40738	38.854	38.677	39.084	0					28	14	3	0	0	0	0.01873	1	15248	15248		124.08	81.216	1	272040			49123	2751	32423	32563	49742	49742					-0.08759741661674525
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;PTK7|p.R964H|1|0.36|ENSG00000112655|chr6:43159805-43159805|G/A|missense_variant	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	611.2640380859375	2	611.264196	1220.51384	1.3943	0.0008523	-0.30442	-0.00018608	1.0899	0.00066622	611.2638899994118	38.825	0.57211	38.825	38.729	39.301	0					21	12	3	0	0	0	0.00024018	1	15288	15288		190.52	132.29	1	662100			49124	2751	32423	32563	49743	49743					-0.08759741661674525
VYNTATNQW	9	Unmodified	_VYNTATNQW_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;HCFC1|p.P367Qfs*16|1|0.4|ENSG00000172534|chrX:153960146-153960146|G/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant;HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant;HCFC2|p.A339Hfs*2|1|0.43|ENSG00000111727|chr12:104082847-104082847|A/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2	nc|ENSG00000172534|P51610-2|HCFC1;HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.7568359375	2	548.756538	1095.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.504	1	36.504	36.004	37.004	0								0	0	0	0.00030372	1	13773	13773		136.27	51.107	1				49125	6369;2693	32424	32564	49744	49744					-0.04540608458864881
VYNTATNQW	9	Unmodified	_VYNTATNQW_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;HCFC1|p.P367Qfs*16|1|0.4|ENSG00000172534|chrX:153960146-153960146|G/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant;HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant;HCFC2|p.A339Hfs*2|1|0.43|ENSG00000111727|chr12:104082847-104082847|A/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2	nc|ENSG00000172534|P51610-2|HCFC1;HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7572021484375	2	548.756538	1095.49852	0.28035	0.00015384	-0.064602	-3.5451E-05	0.21575	0.00011839	548.7568261061147	36.484	0.19092	36.484	36.406	36.597	0					8	5	2	0	0	0	0.012231	1	14206	14206		136.27	43.073	1	84689			49126	6369;2693	32424	32564	49745	49745					-0.04540608458864881
VYPARTQTL	9	Unmodified	_VYPARTQTL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7926025390625	2	524.792924	1047.57129	0.69288	0.00036362	-0.31511	-0.00016537	0.37777	0.00019825	524.7927734077726	26.138	0.35614	26.138	25.972	26.328	0					26	12	3	0	0	0	0.50858	1	7867	7867		31.53	2.3598	1	195320			49127	7569	32425	32565	49746	49746					0.049411453345555856
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	535.293701171875	2	535.293091	1068.57163	0.60009	0.00032123	0.093976	5.0305E-05	0.69407	0.00037153	535.2931499594262	28.404	0.39421	28.404	28.266	28.661	0					34	15	4	0	0	0	0.037924	1	8844	8844		74.255	42.725	1	616500			49128	7301	32426	32566	49747	49747					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	357.19769287109375	3	357.197819	1068.57163	0.1337	4.7759E-05	-0.21888	-7.8184E-05	-0.085178	-3.0426E-05	357.1977770392429	28.365	0.33372	28.365	28.266	28.6	0					27	12	3	0	0	0	0.48389	1	8874	8874		34.173	0.65696	1	552610			49129	7301	32426	32566	49748	49748					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	535.2932739257812	2	535.293091	1068.57163	0.17775	9.5149E-05	0.44265	0.00023695	0.6204	0.0003321	535.2933297759511	28.639	0.92701	28.639	28.358	29.285	0					57	23	5	0	0	0	0.19952	1	10113	10113		45.972	5.3996	1	4978900			49130	7301	32426	32566	49749	49749					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.2933349609375	2	535.293091	1068.57163	0.2913	0.00015593	0.12229	6.5463E-05	0.4136	0.0002214	535.2931585841114	28.654	1.2513	28.654	28.499	29.75	0					52	26	4	0	0	0	0.21419	1	10487	10487		52.937	10.541	1	4061100			49131	7301	32426	32566	49750	49750					0.04008565054414248
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.22845458984375	3	399.228897	1194.66486	0.68057	0.0002717	-0.64395	-0.00025708	0.036624	1.4621E-05	399.22856742402746	32.119	0.30118	32.119	31.949	32.251	0					10	7	2	0	0	0	0.69544	1	11752	11752		22.58	0.61977	1	102640			49132	4109	32427	32567	49751	49751					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	598.3400268554688	2	598.339707	1194.66486	-0.021696	-1.2982E-05	0.1498	8.9629E-05	0.1281	7.6647E-05	598.3397227058543	32.095	0.33647	32.095	31.966	32.303	0					22	8	4	0	0	0	0.35956	1	11737	11737		56.632	27.462	1	564060			49133	4109	32427	32567	49752	49752					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	399.2286071777344	3	399.228897	1194.66486	0.07498	2.9934E-05	-0.36104	-0.00014414	-0.28606	-0.0001142	399.2287720885144	32.055	0.42451	32.055	31.961	32.385	0					20	9	4	0	0	0	0.67464	1	12139	12139		25.126	1.6033	1	404510			49134	4109	32427	32567	49753	49753					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.3401489257812	2	598.339707	1194.66486	0.17293	0.00010347	0.40963	0.0002451	0.58256	0.00034857	598.3398779874195	32.072	0.39207	32.072	31.928	32.321	0					18	8	3	0	0	0	0.15441	1	12143	12143		65.278	32.465	1	739310			49135	4109	32427	32567	49754	49754					0.07531444716960323
VYPKGKESL	9	Unmodified	_VYPKGKESL_					0	0	0			REV__ENSG00000117153|ENST00000367261|KLHL12	REV__ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	510.78955078125	2	510.78985	1019.56515	-0.00711	-3.6317E-06	-0.35496	-0.00018131	-0.36207	-0.00018494	510.78972340495466	32.418	0.29377	32.418	32.331	32.625	0					10	7	2	0	0	0	0.28897	1	11908	11908		44.117	0	1	251090	+		49136	14183	32428	32568	49755	49755					0.056146271030456774
VYPPHSHSI	9	Unmodified	_VYPPHSHSI_					0	0	0		STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	518.7642211914062	2	518.764166	1035.51378	0.51668	0.00026803	-0.13321	-6.9105E-05	0.38347	0.00019893	518.764256517371	21.007	0.34791	21.007	20.825	21.173	0					22	10	3	0	0	0	0.50461	1	5685	5685		31.955	0	1	126100			49137	5941	32429	32569	49756	49756					-0.002556968710223373
VYPPPHQVF	9	Unmodified	_VYPPPHQVF_					0	0	0		ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2850341796875	2	542.284734	1082.55492	0.31535	0.00017101	-0.31063	-0.00016845	0.0047222	2.5608E-06	542.2844713286828	33.745	0.92954	33.745	33.283	34.213	0					30	22	2	0	0	0	0.55282	1	13025	13025		26.796	0	1	281640			49138	1558	32430	32570	49757	49757					0.016940641684641378
VYPRPIITW	9	Unmodified	_VYPRPIITW_					0	0	0		nc|ENSG00000114455|Q9UM44-2|HHLA2;ENSG00000114455|ENST00000467761|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.8292846679688	2	572.829309	1143.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.586	1	47.586	47.086	48.086	0								0	0	0	0.28191	1	18985	18985		39.253	10.103	1				49139	2851	32431	32571	49758	49758					0.07798899127988079
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.284423828125	2	497.2844	992.554247	0.78469	0.00039021	-1.354	-0.0006733	-0.56927	-0.00028309	497.2843567751258	34.501	0.3276	34.501	34.258	34.585	0					26	8	4	0	0	0	0.13267	1	13274	13274		71.877	5.4482	1	1152100			49140	2672	32432	32572	49759	49759					0.05767224728754172
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2839050292969	2	497.2844	992.554247	-2.2993	-0.0011434	2.3862	0.0011866	0.086953	4.324E-05	497.28570235240403	34.259	0.25594	34.259	34.12	34.376	0					16	8	3	0	0	0	0.44593	1	12088	12088		37.812	2.1932	1	280590			49141	2672	32432	32572	49760	49760					0.05767224728754172
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.2842712402344	2	497.2844	992.554247	2.9042	0.0014442	-2.7804	-0.0013827	0.12379	6.1558E-05	497.28325364545555	34.417	0.35966	34.417	34.212	34.572	0					21	7	4	0	0	0	0.18416	1	13181	13181		63.534	22.756	1	1847700			49142	2672	32432	32572	49761	49761					0.05767224728754172
VYPTAVHVL	9	Unmodified	_VYPTAVHVL_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.7870788574219	2	499.78711	997.559667	0.66782	0.00033377	-0.48304	-0.00024142	0.18478	9.235E-05	499.78669284225674	37.944	0.32013	37.944	37.736	38.056	0					21	13	2	0	0	0	0.43426	1	14423	14423		38.806	18.324	1	69247			49143	2723	32433	32573	49762	49762					0.06078948311221666
VYPTAVHVL	9	Unmodified	_VYPTAVHVL_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7872314453125	2	499.78711	997.559667	1.077	0.00053826	-0.62535	-0.00031254	0.45163	0.00022572	499.78679095758525	37.808	0.4385	37.808	37.55	37.988	0					22	9	3	0	0	0	0.49003	1	14819	14819		33.516	3.0119	1	170570			49144	2723	32433	32573	49763	49763					0.06078948311221666
VYPVFLFY	8	Unmodified	_VYPVFLFY_					0	0	0		nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6	nc|ENSG00000181704|Q96EC8-2|YIPF6	nc|ENSG00000181704|Q96EC8-2|YIPF6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.28466796875	2	524.281129	1046.54771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.35	1	42.35	41.85	42.85	0								0	0	0	1.7419	1	16896	16896		33.493	6.6969	1				49145	6862	32434	32574	49764	49764					0.026293315680277374
VYQEMPAQL	9	Unmodified	_VYQEMPAQL_					0	0	0		nc|ENSG00000248098|P12694-2|BCKDHA;ENSG00000248098|ENST00000269980|BCKDHA;BCKDHA|p.R421H|1|0.12|ENSG00000248098|chr19:41424532-41424532|G/A|missense_variant	nc|ENSG00000248098|P12694-2|BCKDHA	nc|ENSG00000248098|P12694-2|BCKDHA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.765869140625	2	539.765517	1077.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.392	1	41.392	40.892	41.892	0								0	0	0	0.31838	1	16463	16463		31.53	4.8369	1				49146	7973	32435	32575	49765	49765					-0.019176095283455652
VYQGHTALL	9	Unmodified	_VYQGHTALL_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.2745666503906	2	501.274367	1000.53418	-0.57717	-0.00028932	0.38026	0.00019061	-0.19691	-9.8704E-05	501.27452656311647	31.597	0.15285	31.597	31.5	31.653	0					6	3	2	0	0	0	0.062676	1	11944	11944		90.777	37.425	1	117650			49147	2751	32436	32576	49766	49766					0.033934737887989286
VYQHGLTGF	9	Unmodified	_VYQHGLTGF_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.25872802734375	2	511.258717	1020.50288	-0.0030642	-1.5666E-06	0.12178	6.2259E-05	0.11871	6.0692E-05	511.25928158717426	34.529	0.32952	34.529	34.443	34.772	0					11	8	2	0	0	0	0.099922	1	12881	12881		79.451	23.947	1	184350			49148	1146	32437	32577	49767	49767					-0.006550992452844184
VYQHGLTGF	9	Unmodified	_VYQHGLTGF_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7614440917969	2	511.258717	1020.50288	-0.38425	-0.00019645	0.94807	0.00048471	0.56382	0.00028826	511.2591321940713	34.335	0.19292	34.335	34.285	34.478	0					10	8	2	0	0	0	0.13267	1	11572	11572		71.877	31.099	1	81501			49149	1146	32437	32577	49768	49768					-0.006550992452844184
VYQHGLTGF	9	Unmodified	_VYQHGLTGF_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.258544921875	2	511.258717	1020.50288	1.2214	0.00062446	0.32764	0.00016751	1.5491	0.00079197	511.25909723977986	34.536	0.47892	34.536	34.454	34.933	0					23	13	3	0	0	0	0.037569	1	13329	13329		101.6	30.305	1	379610			49150	1146	32437	32577	49769	49769					-0.006550992452844184
VYQHGLTGF	9	Unmodified	_VYQHGLTGF_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.25927734375	2	511.258717	1020.50288	-1.7619	-0.0009008	1.4509	0.00074177	-0.31106	-0.00015903	511.2595127548811	34.317	0.15559	34.317	34.221	34.376	0					7	5	2	0	0	0	0.4966	1	12143	12143		32.812	4.9302	1	66930			49151	1146	32437	32577	49770	49770					-0.006550992452844184
VYQKKTQLK	9	Unmodified	_VYQKKTQLK_					0	0	0		TOP2B|p.E62K|1|0.3|ENSG00000077097|chr3:25645356-25645356|C/T|missense_variant	TOP2B|p.E62K|1|0.3|ENSG00000077097|chr3:25645356-25645356|C/T|missense_variant	TOP2B|p.E62K|1|0.3|ENSG00000077097|chr3:25645356-25645356|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.2320556640625	3	379.232641	1134.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.83	1	45.83	45.33	46.33	0								0	0	0	0.3245	1	18361	18361		30.318	9.3708	1				49152	22556	32438	32578	49771	49771					0.11414266811129892
VYQKLLERM	9	Unmodified	_VYQKLLERM_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI;ENST00000504411.1_1_5:135396881-135398912:+|nuORF	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	590.3317260742188	2	590.331359	1178.64816	-0.11929	-7.0421E-05	1.4571	0.00086018	1.3378	0.00078976	590.3321684495454	32.216	0.2018	32.216	32.157	32.359	0					5	4	2	0	0	0	0.26904	1	12261	12261		53.351	15.54	1	52584			49153	3187	32439	32579	49772	49772					0.06598620559384472
VYQKRISY	8	Unmodified	_VYQKRISY_					0	0	0			REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	REV__ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	528.795654296875	2	528.795466	1055.57638	0.2857	0.00015108	0.37232	0.00019688	0.65803	0.00034796	528.7956224017281	26.853	0.1665	26.853	26.744	26.911	0					5	3	2	0	0	0	0.61925	1	9675	9675		44.117	6.9577	1	211950	+		49154	12251	32440	32580	49773	49773					0.0508144919717779
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.2936401367188	2	569.293622	1136.57269	1.1425	0.00065041	-0.68881	-0.00039213	0.45368	0.00025827	569.2928179935891	20.915	0.16425	20.915	20.825	20.99	0					10	5	3	0	0	0	0.023949	1	5681	5681		115.46	67.802	1	225100			49155	2069	32441	32581	49774	49774					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.2944946289062	2	569.293622	1136.57269	0.076768	4.3703E-05	0.62625	0.00035652	0.70302	0.00040023	569.2940196230227	21.252	0.44186	21.252	21.123	21.564	0					20	10	5	0	0	0	0.03984	1	6714	6714		99.375	28.079	1	1238500			49156	2069	32441	32581	49775	49775					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.2938232421875	2	569.293622	1136.57269	0.10551	6.0068E-05	0.55865	0.00031803	0.66416	0.0003781	569.2939277067109	20.932	0.17732	20.932	20.862	21.04	0					16	5	4	0	0	0	0.0090225	1	5921	5921		143.11	63.394	1	815620			49157	2069	32441	32581	49776	49776					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2935180664062	2	569.293622	1136.57269	1.9727	0.0011231	-1.4922	-0.0008495	0.48051	0.00027355	569.2927592779597	21.168	0.6638	21.168	21.062	21.725	0					22	13	3	0	0	0	0.0015262	1	6966	6966		177.71	97.994	1	2914700			49158	2069	32441	32581	49777	49777					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.8649597167969	3	379.86484	1136.57269	-0.13372	-5.0795E-05	-0.2244	-8.5242E-05	-0.35812	-0.00013604	379.86480297284663	21.025	0.17582	21.025	20.944	21.12	0					11	4	4	0	0	0	0.41354	1	6016	6016		76.774	42.602	1	1334900			49159	2069	32441	32581	49778	49778					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.2935791015625	2	569.293622	1136.57269	0.64443	0.00036687	-0.60984	-0.00034718	0.034592	1.9693E-05	569.2934369400069	21.025	0.13441	21.025	20.944	21.078	0					6	3	2	0	0	0	0.20551	1	6032	6032		60.972	26.799	1	244800			49160	2069	32441	32581	49779	49779					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.8648986816406	3	379.86484	1136.57269	0.65616	0.00024925	-0.51679	-0.00019631	0.13938	5.2944E-05	379.8645874516772	21.152	0.86379	21.152	20.926	21.789	0					33	17	4	0	0	0	0.32741	1	6841	6841		84.916	42.519	1	1967200			49161	2069	32441	32581	49780	49780					0.009867794233286986
VYRAQRRL	8	Unmodified	_VYRAQRRL_					0	0	0			REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.3216552734375	2	531.319974	1060.6254	3.423	0.0018187	-0.17627	-9.3658E-05	3.2467	0.0017251	531.3198508266203	39.281	0.41287	39.281	39.19	39.602	0					26	9	5	0	0	0	0.57802	1	15498	15498		52.299	52.299	1	5201100	+		49162	19384	32442	32582	49781	49781					0.09750782276796599
VYRDQNKY	8	Unmodified	_VYRDQNKY_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant;nc|ENSG00000137171|Q9NSK0-4|KLC4;nc|ENSG00000104892|Q6P597-2|KLC3;ENSG00000104892|ENST00000391946|KLC3;nc|ENSG00000104892|Q6P597-3|KLC3;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000174996|ENST00000394067|KLC2	nc|ENSG00000126214|Q07866-8|KLC1;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000174996|Q9H0B6-2|KLC2	nc|ENSG00000126214|Q07866-8|KLC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2738037109375	2	543.272355	1084.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.406	1	22.406	21.906	22.906	0								0	0	0	1.7419	1	6590	6590		45.952	1.5748	1				49163	3463;4146;6527	32443	32583	49782	49782					-0.008726157049068206
VYRQDCETF	9	Unmodified	_VYRQDCETF_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.756591796875	2	580.755681	1159.49681	-0.028038	-1.6283E-05	2.3066	0.0013396	2.2786	0.0013233	580.7573386990181	29.691	0.68728	29.691	29.557	30.245	0					52	17	6	0	0	0	0.056004	1	10802	10802		93.143	31.036	1	9323300			49164	3908	32444	32584	49783	49783					-0.07655985539145149
VYRQDCETF	9	Unmodified	_VYRQDCETF_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.757080078125	2	580.755681	1159.49681	-0.13035	-7.5702E-05	1.5307	0.00088896	1.4003	0.00081325	580.7566073897657	29.846	0.44257	29.846	29.704	30.146	0					35	17	4	0	0	0	0.44593	1	9730	9730		37.812	8.6415	1	156860			49165	3908	32444	32584	49784	49784					-0.07655985539145149
VYRQDCETF	9	Unmodified	_VYRQDCETF_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	580.756103515625	2	580.755681	1159.49681	1.5101	0.00087698	0.56638	0.00032893	2.0765	0.0012059	580.756312328219	29.708	1.1827	29.708	29.599	30.782	0					68	25	6	0	0	0	0.026538	1	11208	11208		112.41	27.495	1	16643000			49166	3908	32444	32584	49785	49785					-0.07655985539145149
VYRQDCETF	9	Unmodified	_VYRQDCETF_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	580.75634765625	2	580.755681	1159.49681	3.2439	0.0018839	-1.066	-0.00061906	2.178	0.0012649	580.7552815032425	29.625	1.3977	29.625	29.515	30.913	0					70	28	3	0	0	0	0.013878	1	11054	11054		132.76	69.452	1	19169000			49167	3908	32444	32584	49786	49786					-0.07655985539145149
VYSCDQERQ	9	Carbamidomethyl (C)	_VYSC(Carbamidomethyl (C))DQERQ_	VYSC(1)DQERQ		VYSC(72)DQERQ		0	1	0		nc|ENSG00000198732|Q9H4F8|SMOC1;ENSG00000198732|ENST00000361956|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	592.7514038085938	2	592.753669	1183.49279	0.27778	0.00016466	-3.2433	-0.0019225	-2.9655	-0.0017578	592.7517307000063	29.359	0.17128	29.359	29.234	29.406	0					7	4	2	0	0	0	0.13267	1	10467	10467		71.877	23.962	1	141490			49168	7598	32445	32585	49787	49787	324				-0.09162075032850225
VYSGPIGTAI	10	Unmodified	_VYSGPIGTAI_					0	0	0		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.26861572265625	2	489.26875	976.522947	-1.2518	-0.00061247	1.0285	0.00050319	-0.22335	-0.00010928	489.2691070482269	29.095	0.46513	29.095	28.851	29.317	0					34	18	2	0	0	0	0.54861	1	9432	9432		35.618	7.736	1	180390			49169	7206	32446	32586	49788	49788					0.03374651694673503
VYSGPIGTAI	10	Unmodified	_VYSGPIGTAI_					0	0	0		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.26849365234375	2	489.26875	976.522947	0.60519	0.0002961	2.6022	0.0012732	3.2074	0.0015693	489.2685172140901	29.281	0.80703	29.281	28.96	29.767	0					46	17	4	0	0	0	0.27065	1	10841	10841		68.787	17.451	1	750860			49170	7206	32446	32586	49789	49789					0.03374651694673503
VYSGQKDLF	9	Unmodified	_VYSGQKDLF_					0	0	0			REV__EPS15L1|p.F73S|1|0.47|ENSG00000127527|chr19:16437861-16437861|A/G|missense_variant	REV__EPS15L1|p.F73S|1|0.47|ENSG00000127527|chr19:16437861-16437861|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	528.7720947265625	2	528.771657	1055.52876	3.4601	0.0018296	-3.0303	-0.0016023	0.42984	0.00022729	528.7700205539544	42.981	0.13354	42.981	42.889	43.023	0					7	4	2	0	0	0	0.33044	1	17172	17172		47.657	3.1263	1	48852	+		49171	20644	32447	32587	49790	49790					0.00321750206330762
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.8186645507812	2	543.818941	1085.62333	1.1621	0.00063195	-0.4624	-0.00025146	0.69966	0.00038049	543.818662425769	27.295	0.26745	27.295	27.201	27.468	0					25	10	3	0	0	0	0.078509	1	8379	8379		85.161	30.385	1	727510			49172	3965	32448	32588	49791	49791					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	362.8816833496094	3	362.88172	1085.62333	0.10392	3.7712E-05	-0.21876	-7.9383E-05	-0.11483	-4.1671E-05	362.88163067732853	27.309	0.27293	27.309	27.226	27.499	0					25	10	4	0	0	0	0.22377	1	8388	8388		95.815	95.815	1	288460			49173	3965	32448	32588	49792	49792					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8192138671875	2	543.818941	1085.62333	0.35305	0.000192	-0.010202	-5.5482E-06	0.34285	0.00018645	543.8189031117776	27.538	0.63333	27.538	27.448	28.081	0					35	15	4	0	0	0	0.0040894	1	9617	9617		162.25	77.092	1	4653000			49174	3965	32448	32588	49793	49793					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.3212280273438	2	543.818941	1085.62333	0.39535	0.000215	0.36001	0.00019578	0.75536	0.00041078	543.8190799750795	27.317	0.2264	27.317	27.247	27.474	0					18	8	3	0	0	0	0.27249	1	8678	8678		52.937	3.4952	1	267370			49175	3965	32448	32588	49794	49794					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	363.2161560058594	3	362.88172	1085.62333	-0.70282	-0.00025504	0.52229	0.00018953	-0.18053	-6.551E-05	362.8818624520551	27.325	0.42871	27.325	27.214	27.643	0					39	15	4	0	0	0	0.50461	1	8674	8674		39.253	20.722	1	1302400			49176	3965	32448	32588	49795	49795					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	362.8818359375	3	362.88172	1085.62333	0.48702	0.00017673	-0.40328	-0.00014634	0.083743	3.0389E-05	362.88155237082555	27.547	1.0266	27.547	27.439	28.465	0					49	21	5	0	0	0	0.12239	1	9979	9979		90.601	28.91	1	4960500			49177	3965	32448	32588	49796	49796					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8190307617188	2	543.818941	1085.62333	0.32306	0.00017568	0.68226	0.00037102	1.0053	0.00054671	543.8192417762948	27.547	0.35912	27.547	27.439	27.798	0					13	7	3	0	0	0	0.014688	1	9983	9983		131.03	45.871	1	782910			49178	3965	32448	32588	49797	49797					0.08394308748324875
VYSKDQLQTF	10	Unmodified	_VYSKDQLQTF_					0	0	0		ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B	ENST00000418944.1_1_2:110941632-110941998:+|nuORF	ENST00000418944.1_1_2:110941632-110941998:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	614.8145751953125	2	614.814053	1227.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.774	1	33.774	33.274	34.274	0								0	0	0	0.37702	1	12954	12954		37.508	12.058	1				49179	2880	32449	32589	49798	49798					0.008850759522829321
VYSKTQQSF	9	Unmodified	_VYSKTQQSF_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2748413085938	2	544.274564	1086.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.189	1	23.189	22.689	23.689	0								0	0	0	0.091378	1	7827	7827		74.165	21.228	1				49180	4567	32450	32590	49799	49799					-0.005231512820046191
VYSNTIQSL	9	Unmodified	_VYSNTIQSL_					0	0	0		nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000087258|ENST00000262493|GNAO1	nc|ENSG00000087258|P09471-2|GNAO1	nc|ENSG00000087258|P09471-2|GNAO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7692260742188	2	512.769114	1023.52368	0.0086473	4.4341E-06	0.55964	0.00028697	0.56829	0.0002914	512.7689492974337	38.356	0.15965	38.356	38.305	38.465	0					9	5	2	0	0	0	0.014688	1	14574	14574		131.03	0	1	190800			49181	1763	32451	32591	49800	49800					0.01285446343717922
VYSPKSPSL	9	Unmodified	_VYSPKSPSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2686462402344	2	489.26875	976.522947	0.78013	0.00038169	-0.63199	-0.00030921	0.14814	7.2481E-05	489.26862424370717	29.354	0.52847	29.354	28.968	29.496	0					20	13	2	0	0	0	0.27123	1	10458	10458		37.812	2.1932	1	186550			49182	2193	32452	32592	49801	49801					0.03374651694673503
VYSPKSPSL	9	Unmodified	_VYSPKSPSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.26849365234375	2	489.26875	976.522947	0.77661	0.00037997	-1.1577	-0.00056643	-0.3811	-0.00018646	489.26817068984815	29.249	0.60548	29.249	28.893	29.498	0					24	12	3	0	0	0	0.063171	1	10682	10682		84.916	24.622	1	896670			49183	2193	32452	32592	49802	49802					0.03374651694673503
VYSRREFI	8	Unmodified	_VYSRREFI_					0	0	0		ENST00000321535.4_1_17:6690264-6690697:+|nuORF	ENST00000321535.4_1_17:6690264-6690697:+|nuORF	ENST00000321535.4_1_17:6690264-6690697:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2931518554688	2	535.293091	1068.57163	0.137	7.3335E-05	0.48377	0.00025896	0.62076	0.00033229	535.2934088910357	28.415	0.28893	28.415	28.31	28.598	0					26	10	3	0	0	0	0.66372	1	9132	9132		20.482	0	1	536380			49184	8617	32453	32593	49803	49803					0.04008565054414248
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	600.2918090820312	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.89	1	37.89	37.39	38.39	0								0	0	0	0.3063	1	12382	12382		33.922	5.3449	1				49185	1085	32454	32594	49804	49804					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	600.2894287109375	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.87	1	37.87	37.37	38.37	0								0	0	0	0.13425	1	12375	12375		63.534	29.361	1				49186	1085	32454	32594	49805	49805					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.2908325195312	2	600.290214	1198.56587	0.56089	0.00033669	-0.47843	-0.00028719	0.08246	4.95E-05	600.2899324349519	38.159	0.37635	38.159	38.097	38.474	0					30	14	3	0	0	0	0.048471	1	14481	14481		95.815	19.645	1	404300			49187	1085	32454	32594	49806	49806					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	600.2907104492188	2	600.290214	1198.56587	-0.14588	-8.7569E-05	0.78493	0.00047119	0.63905	0.00038362	600.2904086585928	38.182	0.36567	38.182	38.128	38.493	0					18	13	2	0	0	0	0.01873	1	14500	14500		124.08	58.923	1	319290			49188	1085	32454	32594	49807	49807					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2900390625	2	600.290214	1198.56587	0.99216	0.00059558	-0.94004	-0.0005643	0.052119	3.1286E-05	600.2894773799937	41.481	1.3043	41.481	41.26	42.564	0					115	59	2	0	0	0	0.078509	4	16393	16256;16393;16521;16638		85.161	41.51	1	187010			49189	1085	32454	32594	49808;49809;49810;49811	49809					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2901611328125	2	600.290214	1198.56587	0.9915	0.00059519	-0.16181	-9.7131E-05	0.82969	0.00049805	600.2900706778903	42.78	0.80552	42.78	42.578	43.384	0					60	41	2	0	0	0	0.098791	2	16765	16765;16885		79.713	19.782	1	113750			49190	1085	32454	32594	49812;49813	49812					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2925415039062	2	600.290214	1198.56587	0.99185	0.0005954	-0.32294	-0.00019386	0.66891	0.00040154	600.2902669263567	45.339	0.44501	45.339	45.186	45.631	0					41	25	2	0	0	0	0.22837	1	17522	17522		58.23	13.853	1	58040			49191	1085	32454	32594	49814	49814					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2896118164062	2	600.290214	1198.56587	0.99111	0.00059495	0.20079	0.00012053	1.1919	0.00071548	600.2902671880859	46.075	0.45567	46.075	45.641	46.097	0					43	26	2	0	0	0	0.3269	1	17746	17746		47.96	11.642	1	62996			49192	1085	32454	32594	49815	49815					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.29150390625	2	600.290214	1198.56587	0.99008	0.00059433	0.36194	0.00021727	1.352	0.00081161	600.2903391875125	46.446	0.44085	46.446	46.351	46.792	0					32	25	2	0	0	0	0.27249	1	17850	17850		52.937	9.2859	1	54135			49193	1085	32454	32594	49816	49816					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2908325195312	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.789	1	43.789	43.289	44.289	0								0	0	0	0.12601	1	17102	17102		65.465	30.313	1				49194	1085	32454	32594	49817	49817					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2921752929688	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.142	1	44.142	43.642	44.642	0								0	0	0	0.21054	1	17213	17213		49.442	3.4896	1				49195	1085	32454	32594	49818	49818					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2894897460938	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.528	1	44.528	44.028	45.028	0								0	0	0	0.17378	1	17329	17329		54.776	16.023	1				49196	1085	32454	32594	49819	49819					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2921142578125	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.875	1	44.875	44.375	45.375	0								0	0	0	0.14881	1	17419	17419		60.118	16.467	1				49197	1085	32454	32594	49820	49820					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2903442382812	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.036	1	47.036	46.536	47.536	0								0	0	0	0.13425	1	18014	18014		63.534	24.78	1				49198	1085	32454	32594	49821	49821					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2913818359375	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.521	1	47.521	47.021	48.021	0								0	0	0	0.30009	1	18135	18135		35.152	10.92	1				49199	1085	32454	32594	49822	49822					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.291748046875	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.892	1	47.892	47.392	48.392	0								0	0	0	0.14033	1	18218	18218		62.107	14.148	1				49200	1085	32454	32594	49823	49823					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2904663085938	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.299	1	48.299	47.799	48.799	0								0	0	0	0.22075	1	18316	18316		47.96	10.148	1				49201	1085	32454	32594	49824	49824					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2892456054688	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.697	1	49.697	49.197	50.197	0								0	0	0	0.23445	1	18687	18687		45.972	11.8	1				49202	1085	32454	32594	49825	49825					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2927856445312	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.874	1	53.874	53.374	54.374	0								0	0	0	0.35737	1	19628	19628		23.523	0.48021	1				49203	1085	32454	32594	49826	49826					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.7930297851562	2	600.290214	1198.56587	0.47034	0.00028234	0.014044	8.4306E-06	0.48438	0.00029077	600.2901712232397	37.926	0.88226	37.926	37.799	38.682	0					129	44	5	0	0	0	0.07136	3	13661	13539;13661;13788		87.696	36.169	1	3585500			49204	1085	32454	32594	49827;49828;49829	49828					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.791748046875	2	600.290214	1198.56587	0.47129	0.00028291	0.28988	0.00017401	0.76117	0.00045692	600.2905388456121	38.779	0.23308	38.779	38.642	38.875	0					18	12	2	0	0	0	0.17062	1	13833	13833		65.157	26.351	1	70091			49205	1085	32454	32594	49830	49830					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.29052734375	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.111	1	39.111	38.611	39.611	0								0	0	0	0.27939	1	13958	13958		39.253	10.103	1				49206	1085	32454	32594	49831	49831					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2904663085938	2	600.290214	1198.56587	2.1023	0.001262	-1.5275	-0.00091693	0.5748	0.00034505	600.2893122031008	47.713	0.61026	47.713	47.396	48.006	0					68	33	3	0	0	0	0.037924	1	19013	19013		101.25	49.725	1	102180			49207	1085	32454	32594	49832	49832					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2916870117188	2	600.290214	1198.56587	2.0946	0.0012573	-1.0435	-0.00062639	1.0511	0.00063095	600.2894923166523	48.375	0.60832	48.375	47.883	48.491	0					53	31	2	0	0	0	0.07136	2	19122	19122;19234		87.696	35.79	1	104050			49208	1085	32454	32594	49833;49834	49833					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2915649414062	2	600.290214	1198.56587	2.0952	0.0012577	-1.432	-0.00085964	0.66316	0.00039809	600.2894182447598	48.776	0.61668	48.776	48.485	49.102	0					57	33	2	0	0	0	0.11411	2	19455	19344;19455		76.17	32.519	1	110640			49209	1085	32454	32594	49835;49836	49836					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2896118164062	2	600.290214	1198.56587	2.0905	0.0012549	-0.70702	-0.00042442	1.3835	0.00083048	600.2897919286414	50.24	1.8962	50.24	49.113	51.009	0					140	99	2	0	0	0	0.07136	5	19555	19555;19685;19810;19905;19986		87.696	41.24	1	124030			49210	1085	32454	32594	49837;49838;49839;49840;49841	49837					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2918701171875	2	600.290214	1198.56587	2.0999	0.0012605	-0.65439	-0.00039282	1.4455	0.00086771	600.2897011089332	51.175	1.0096	51.175	51.021	52.03	0					76	59	2	0	0	0	0.098791	1	20066	20066		79.713	28.185	1	77229			49211	1085	32454	32594	49842	49842					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.7941284179688	2	600.290214	1198.56587	2.0969	0.0012587	-0.31247	-0.00018757	1.7844	0.0010712	600.2900158170966	52.71	0.6523	52.71	52.305	52.957	0					57	39	2	0	0	0	0.14578	1	20401	20401		68.846	33.668	1	59757			49212	1085	32454	32594	49843	49843					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2919311523438	2	600.290214	1198.56587	2.1001	0.0012606	-0.61444	-0.00036884	1.4856	0.0008918	600.2899604322361	53.106	0.32844	53.106	52.933	53.261	0					24	19	2	0	0	0	0.33044	1	20492	20492		47.657	16.023	1	68920			49213	1085	32454	32594	49844	49844					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2919921875	2	600.290214	1198.56587	2.0887	0.0012538	-0.65586	-0.00039371	1.4328	0.0008601	600.2899982399854	55.51	0.75672	55.51	55.32	56.076	0					53	40	2	0	0	0	0.42902	1	21013	21013		39.253	2.9352	1	52211			49214	1085	32454	32594	49845	49845					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.291748046875	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.542	1	51.542	51.042	52.042	0								0	0	0	0.14033	1	20152	20152		62.107	18.457	1				49215	1085	32454	32594	49846	49846					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.292236328125	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.899	1	51.899	51.399	52.399	0								0	0	0	0.11736	1	20240	20240		67.494	21.521	1				49216	1085	32454	32594	49847	49847					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2911987304688	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.25	1	52.25	51.75	52.75	0								0	0	0	0.10826	1	20325	20325		69.628	18.435	1				49217	1085	32454	32594	49848	49848					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2901000976562	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.366	1	53.366	52.866	53.866	0								0	0	0	0.15687	1	20566	20566		58.23	11.002	1				49218	1085	32454	32594	49849	49849					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.29150390625	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.715	1	53.715	53.215	54.215	0								0	0	0	0.23445	1	20638	20638		45.972	14.338	1				49219	1085	32454	32594	49850	49850					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2916870117188	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.095	1	54.095	53.595	54.595	0								0	0	0	0.15687	1	20714	20714		58.23	27.661	1				49220	1085	32454	32594	49851	49851					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2913818359375	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.474	1	54.474	53.974	54.974	0								0	0	0	0.31838	1	20790	20790		31.53	2.3803	1				49221	1085	32454	32594	49852	49852					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2911376953125	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.821	1	54.821	54.321	55.321	0								0	0	0	0.15687	1	20861	20861		58.23	25.418	1				49222	1085	32454	32594	49853	49853					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2904052734375	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.166	1	55.166	54.666	55.666	0								0	0	0	0.26578	1	20931	20931		41.427	5.109	1				49223	1085	32454	32594	49854	49854					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.290283203125	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.817	1	56.817	56.317	57.317	0								0	0	0	0.24544	1	21241	21241		44.377	0.7264	1				49224	1085	32454	32594	49855	49855					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2894287109375	2	600.290214	1198.56587	3.1217	0.0018739	-2.7379	-0.0016435	0.38382	0.0002304	600.2884900872724	49.191	0.36871	49.191	49.002	49.371	0					34	21	2	0	0	0	0.20551	1	19459	19459		60.972	1.0412	1	60720			49225	1085	32454	32594	49856	49856					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.793212890625	2	600.290214	1198.56587	3.1216	0.0018738	-0.9556	-0.00057364	2.166	0.0013002	600.2895198537767	51.337	0.22372	51.337	51.187	51.411	0					20	13	2	0	0	0	0.38666	1	20091	20091		42.864	10.052	1	42754			49226	1085	32454	32594	49857	49857					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.29150390625	2	600.290214	1198.56587	3.1209	0.0018734	-1.5171	-0.00091067	1.6038	0.00096275	600.7906691229033	51.485	0.24481	51.485	51.422	51.667	0					23	14	2	0	0	0	0.41113	1	20173	20173		40.778	7.9657	1	69821			49227	1085	32454	32594	49858	49858					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.291015625	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.66	1	45.66	45.16	46.16	0								0	0	0	0.19847	1	18293	18293		51.193	11.94	1				49228	1085	32454	32594	49859	49859					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2903442382812	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.696	1	46.696	46.196	47.196	0								0	0	0	0.20989	1	18678	18678		49.536	13.218	1				49229	1085	32454	32594	49860	49860					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2904052734375	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.051	1	47.051	46.551	47.551	0								0	0	0	0.088368	1	18804	18804		75.043	31.393	1				49230	1085	32454	32594	49861	49861					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2900390625	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.4	1	47.4	46.9	47.9	0								0	0	0	0.27939	1	18928	18928		39.253	6.4404	1				49231	1085	32454	32594	49862	49862					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2908325195312	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.743	1	47.743	47.243	48.243	0								0	0	0	0.15687	1	19031	19031		58.23	20.418	1				49232	1085	32454	32594	49863	49863					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.291259765625	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.084	1	48.084	47.584	48.584	0								0	0	0	0.30009	1	19133	19133		35.152	7.2698	1				49233	1085	32454	32594	49864	49864					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.289306640625	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.421	1	48.421	47.921	48.921	0								0	0	0	0.20989	1	19245	19245		49.536	13.918	1				49234	1085	32454	32594	49865	49865					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2908325195312	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.924	1	50.924	50.424	51.424	0								0	0	0	0.11736	1	20004	20004		67.494	34.681	1				49235	1085	32454	32594	49866	49866					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2896118164062	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.124	1	53.124	52.624	53.624	0								0	0	0	0.10319	1	20514	20514		70.816	33.657	1				49236	1085	32454	32594	49867	49867					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2908325195312	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.496	1	53.496	52.996	53.996	0								0	0	0	0.15687	1	20593	20593		58.23	6.7022	1				49237	1085	32454	32594	49868	49868					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2910766601562	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.521	1	54.521	54.021	55.021	0								0	0	0	0.27939	1	20800	20800		39.253	7.298	1				49238	1085	32454	32594	49869	49869					-0.025465782479159316
VYSRYFTTY	9	Unmodified	_VYSRYFTTY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2899169921875	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.173	1	56.173	55.673	56.673	0								0	0	0	0.23445	1	21114	21114		45.972	10.354	1				49239	1085	32454	32594	49870	49870					-0.025465782479159316
VYTDCSNKL	9	Unmodified	_VYTDCSNKL_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.7485961914062	2	521.747324	1041.4801	0.78783	0.00041105	-0.082417	-4.3001E-05	0.70541	0.00036804	521.7475475525532	27.529	0.25985	27.529	27.458	27.718	0					12	8	2	0	0	0	0.38666	1	8502	8502		42.864	4.0581	1	129910			49240	6967	32455	32595	49871	49871					-0.03898486425077863
VYTDCSNKL	9	Unmodified	_VYTDCSNKL_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7476806640625	2	521.747324	1041.4801	0.078561	4.0989E-05	0.7276	0.00037962	0.80616	0.00042061	521.7477331284956	27.745	0.38965	27.745	27.653	28.043	0					17	9	2	0	0	0	0.28897	1	9754	9754		51.193	3.2771	1	597970			49241	6967	32455	32595	49872	49872					-0.03898486425077863
VYTDCSNKL	9	Unmodified	_VYTDCSNKL_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7473754882812	2	521.747324	1041.4801	-0.12381	-6.4595E-05	0.36856	0.0001923	0.24476	0.0001277	521.7476675104375	27.79	0.31399	27.79	27.682	27.996	0					13	6	3	0	0	0	0.22837	1	10118	10118		58.23	5.9308	1	424540			49242	6967	32455	32595	49873	49873					-0.03898486425077863
VYTDCSNKL	9	Unmodified	_VYTDCSNKL_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7474975585938	2	521.747324	1041.4801	3.3899	0.0017687	-2.9015	-0.0015138	0.48844	0.00025484	521.7458613390037	27.738	0.31476	27.738	27.628	27.943	0					11	6	2	0	0	0	0.30841	1	9976	9976		49.536	1.6204	1	750930			49243	6967	32455	32595	49874	49874					-0.03898486425077863
VYTKKTTKL	9	Unmodified	_VYTKKTTKL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.3346557617188	2	541.334424	1080.6543	1.0411	0.00056359	-0.84075	-0.00045513	0.20036	0.00010846	541.3339967994492	16.219	0.095501	16.219	16.173	16.269	0					8	5	2	0	0	0	0.37744	1	3657	3657		36.447	20.805	1	122280			49244	4828	32456	32596	49875	49875					0.11719462062546881
VYTKKTTKL	9	Unmodified	_VYTKKTTKL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.3347778320312	2	541.334424	1080.6543	0.29055	0.00015729	0.57744	0.00031259	0.86799	0.00046987	541.3346816740128	16.489	0.096172	16.489	16.438	16.534	0					8	2	4	0	0	0	0.024086	1	4485	4485		109.44	66.575	1	820990			49245	4828	32456	32596	49876	49876					0.11719462062546881
VYTKKTTKL	9	Unmodified	_VYTKKTTKL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	361.2254333496094	3	361.225375	1080.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.231	1	16.231	15.731	16.731	0								0	0	0	0.29356	1	3852	3852		36.447	9.7538	1				49246	4828	32456	32596	49877	49877					0.11719462062546881
VYTKKTTKL	9	Unmodified	_VYTKKTTKL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.3347778320312	2	541.334424	1080.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.479	1	16.479	15.979	16.979	0								0	0	0	0.097963	1	4717	4717		65.465	46.362	1				49247	4828	32456	32596	49878	49878					0.11719462062546881
VYTKKTTKL	9	Unmodified	_VYTKKTTKL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	361.22528076171875	3	361.225375	1080.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.28	1	16.28	15.78	16.78	0								0	0	0	0.31785	1	3826	3826		31.634	8.2564	1				49248	4828	32456	32596	49879	49879					0.11719462062546881
VYTKKTTKL	9	Unmodified	_VYTKKTTKL_					0	0	0		ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	ENSG00000148396|ENST00000684901|SEC16A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.3346557617188	2	541.334424	1080.6543	-1.4834	-0.00080302	2.0826	0.0011274	0.59918	0.00032436	541.3356299390501	16.276	0.11567	16.276	16.218	16.334	0					5	3	2	0	0	0	0.18505	1	3821	3821		56.434	10.482	1	101710			49249	4828	32456	32596	49880	49880					0.11719462062546881
VYTLAKLGL	9	Unmodified	_VYTLAKLGL_					0	0	0			REV__ENST00000558439.5_1_15:51226794-51242057:+|nuORF	REV__ENST00000558439.5_1_15:51226794-51242057:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.30450439453125	2	489.305136	976.595718	0.77733	0.00038035	-1.3972	-0.00068363	-0.61982	-0.00030328	489.3043160969435	43.332	0.085293	43.332	43.307	43.392	0					6	3	2	0	0	0	0.33044	1	17344	17344		47.657	0	1	53197	+		49250	13301	32457	32597	49881	49881					0.10648405488075241
VYTLLTTHL	9	Unmodified	_VYTLLTTHL_					0	0	0		nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3057250976562	2	530.8055	1059.59645	0.28764	0.00015268	-2.1381	-0.0011349	-1.8505	-0.00098224	530.8057602293684	45.629	0.24804	45.629	45.498	45.746	0					33	13	3	0	0	0	0.14603	1	17637	17637		68.787	24.67	1	318400			49251	6446	32458	32598	49882	49882					0.06903200137116983
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1;TNS1|p.G470Afs*23|1|0.3|ENSG00000079308|chr2:217848733-217848733|C/-|frameshift_variant;TNS1|p.G532Afs*9|1|0.23|ENSG00000079308|chr2:217848547-217848547|C/-|frameshift_variant;TNS1|p.G637Efs*11|1|0.16|ENSG00000079308|chr2:217848232-217848232|C/-|frameshift_variant;TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2672119140625	2	515.266207	1028.51786	0.1528	7.8732E-05	0.76125	0.00039225	0.91405	0.00047098	515.2663799478344	45.569	0.15654	45.569	45.457	45.613	0					7	5	2	0	0	0	0.42902	1	18266	18266		39.253	4.0521	1	31633			49252	1617	32459	32599	49883	49883					0.004743478320506256
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1;TNS1|p.G470Afs*23|1|0.3|ENSG00000079308|chr2:217848733-217848733|C/-|frameshift_variant;TNS1|p.G532Afs*9|1|0.23|ENSG00000079308|chr2:217848547-217848547|C/-|frameshift_variant;TNS1|p.G637Efs*11|1|0.16|ENSG00000079308|chr2:217848232-217848232|C/-|frameshift_variant;TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2667236328125	2	515.266207	1028.51786	1.4982	0.00077198	-0.81933	-0.00042217	0.67888	0.0003498	515.2656482104799	45.545	0.28559	45.545	45.42	45.705	0					15	10	2	0	0	0	0.098791	1	18238	18238		79.713	18.741	1	203280			49253	1617	32459	32599	49884	49884					0.004743478320506256
VYTSGIYNV	9	Unmodified	_VYTSGIYNV_					0	0	0		nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;TNS3|p.Q372Rfs*46|1|0.1|ENSG00000136205|chr7:47369532-47369532|G/-|frameshift_variant;nc|ENSG00000136205|Q68CZ2-2|TNS3;TNS3|p.S1335Gfs*89|1|0.09|ENSG00000136205|chr7:47283791-47283792|-/CAGGGCCTTCATCCTGGACCAGGGTGATGCC|frameshift_variant;TNS3|p.L1417Cfs*22|1|0.13|ENSG00000136205|chr7:47278165-47278165|G/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-4|TNS3	nc|ENSG00000136205|Q68CZ2-4|TNS3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2579040527344	2	508.258382	1014.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.357	1	41.357	40.857	41.857	0								0	0	0	0.27939	1	16445	16445		39.253	2.0937	1				49254	4061	32460	32600	49885	49885					-0.0044593868499305245
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.766357421875	2	519.766374	1037.5182	0.60775	0.00031589	-0.044063	-2.2902E-05	0.56369	0.00029299	519.766412831986	34.463	0.33147	34.463	34.375	34.706	0					32	14	3	0	0	0	0.043797	1	11259	11259		97.473	55.077	1	521120			49255	11480	32461	32601	49886	49886					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7667236328125	2	519.766374	1037.5182	0.064156	3.3346E-05	0.46155	0.0002399	0.5257	0.00027324	519.766528975782	34.726	0.39327	34.726	34.6	34.993	0					29	10	4	0	0	0	0.0072873	1	12947	12947		148.21	82.403	1	3369200			49256	11480	32461	32601	49887	49887					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.767333984375	2	519.766374	1037.5182	0.22177	0.00011527	0.94231	0.00048978	1.1641	0.00060505	519.76696029484	34.522	0.47978	34.522	34.312	34.792	0					46	21	3	0	0	0	0.30268	1	11633	11633		50.025	11.218	1	694580			49257	11480	32461	32601	49888	49888					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7665405273438	2	519.766374	1037.5182	1.6535	0.00085942	-0.53709	-0.00027916	1.1164	0.00058026	519.7658694705112	34.732	0.84651	34.732	34.412	35.258	0					50	23	3	0	0	0	0.023949	1	13399	13399		115.46	54.487	1	5680400			49258	11480	32461	32601	49889	49889					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.766845703125	2	519.766374	1037.5182	1.6157	0.00083977	-0.43371	-0.00022543	1.182	0.00061434	519.7659841862028	34.648	1.0033	34.648	34.327	35.33	0					58	20	4	0	0	0	0.0090636	1	13299	13299		143.02	77.216	1	5177300			49259	11480	32461	32601	49890	49890					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|2|0.33|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7667846679688	2	519.766374	1037.5182	3.3639	0.0017484	-2.0889	-0.0010858	1.2749	0.00066266	519.76515559424	34.686	1.0041	34.686	34.36	35.364	0					48	20	4	0	0	0	0.015835	1	13315	13315		128.86	60.074	1	6103000			49260	11480	32461	32601	49891	49891					0.0009376755190260155
VYTSKSDVW	9	Unmodified	_VYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	542.7689819335938	2	542.769114	1083.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.978	1	31.978	31.478	32.478	0								0	0	0	0.17378	1	10311	10311		54.776	12.38	1				49261	5045	32462	32602	49892	49892					-0.014745536562941197
VYTSKSDVW	9	Unmodified	_VYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.7694091796875	2	542.769114	1083.52368	0.26377	0.00014317	1.5304	0.00083067	1.7942	0.00097383	542.7699232918475	32.019	0.1335	32.019	31.987	32.121	0					10	5	2	0	0	0	0.42902	1	10675	10675		39.253	8.7492	1	65507			49262	5045	32462	32602	49893	49893					-0.014745536562941197
VYTSKSDVW	9	Unmodified	_VYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	542.7696533203125	2	542.769114	1083.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.05	1	32.05	31.55	32.55	0								0	0	0	0.30504	1	11105	11105		34.173	2.2177	1				49263	5045	32462	32602	49894	49894					-0.014745536562941197
VYTSRGQGPI	10	Unmodified	_VYTSRGQGPI_					0	0	0			REV__nc|ENSG00000114867|Q04637-4|EIF4G1	REV__nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.28857421875	2	539.288005	1076.56146	0.89026	0.00048011	1.0347	0.000558	1.925	0.0010381	539.2884663446381	20.342	0.11395	20.342	20.267	20.381	0					5	3	2	0	0	0	0.61187	1	5434	5434		32.812	4.9302	1	61226	+		49264	14089	32463	32603	49895	49895					0.026239573292059504
VYTTMAEHF	9	Oxidation (M)	_VYTTM(Oxidation (M))AEHF_		VYTTM(1)AEHF		VYTTM(61)AEHF	0	0	1		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.74755859375	2	557.747324	1113.4801	1.4247	0.00079461	-0.87475	-0.00048789	0.54992	0.00030672	557.7470379893358	29.185	0.22628	29.185	29.097	29.323	0					14	8	2	0	0	0	0.20551	1	9183	9183		60.972	29.442	1	96062			49265	3040	32464	32604	49896	49896		133			-0.07210486425083218
VYTTMAEHF	9	Oxidation (M)	_VYTTM(Oxidation (M))AEHF_		VYTTM(1)AEHF		VYTTM(99)AEHF	0	0	1		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.7479858398438	2	557.747324	1113.4801	1.804	0.0010062	-0.98639	-0.00055016	0.81764	0.00045604	557.7467162115221	29.446	0.46047	29.446	29.324	29.784	0					31	11	4	0	0	0	0.03984	1	10510	10510		99.375	67.42	1	452660			49266	3040	32464	32604	49897	49897		133			-0.07210486425083218
VYTTMAEHF	9	Oxidation (M)	_VYTTM(Oxidation (M))AEHF_		VYTTM(1)AEHF		VYTTM(150)AEHF	0	0	1		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7476196289062	2	557.747324	1113.4801	0.58778	0.00032783	0.64273	0.00035848	1.2305	0.00068631	557.7475842685585	29.53	0.44985	29.53	29.334	29.784	0					20	9	4	0	0	0	0.0074068	1	10910	10910		147.69	64.943	1	428620			49267	3040	32464	32604	49898	49898		133			-0.07210486425083218
VYTTMAEHF	9	Oxidation (M)	_VYTTM(Oxidation (M))AEHF_		VYTTM(1)AEHF		VYTTM(46)AEHF	0	0	1		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.7474975585938	2	557.747324	1113.4801	1.1235	0.00062665	-0.98363	-0.00054862	0.1399	7.803E-05	557.7466424478004	29.301	0.21963	29.301	29.17	29.39	0					8	5	2	0	0	0	0.35045	1	9852	9852		45.952	16.11	1	60665			49268	3040	32464	32604	49899	49899		133			-0.07210486425083218
VYTTMAEHF	9	Oxidation (M)	_VYTTM(Oxidation (M))AEHF_		VYTTM(1)AEHF		VYTTM(120)AEHF	0	0	1		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7476196289062	2	557.747324	1113.4801	1.2611	0.00070337	-0.20578	-0.00011477	1.0553	0.0005886	557.7472847978635	29.398	0.60429	29.398	29.258	29.862	0					20	12	2	0	0	0	0.020824	1	10736	10736		120.62	83.462	1	433400			49269	3040	32464	32604	49900	49900		133			-0.07210486425083218
VYTTMAEHF	9	Oxidation (M)	_VYTTM(Oxidation (M))AEHF_		VYTTM(1)AEHF		VYTTM(91)AEHF	0	0	1		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.7478637695312	2	557.747324	1113.4801	1.8249	0.0010178	-1.3438	-0.00074948	0.48116	0.00026837	557.7465373375685	29.444	0.50729	29.444	29.241	29.748	0					26	10	4	0	0	0	0.062676	1	10779	10779		90.777	37.425	1	604240			49270	3040	32464	32604	49901	49901		133			-0.07210486425083218
VYTTMAEHF	9	Unmodified	_VYTTMAEHF_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	549.7515258789062	2	549.749867	1097.48518	1.57	0.00086311	0.51796	0.00028475	2.088	0.0011479	549.7504008238694	35.742	0.21004	35.742	35.675	35.885	0					24	10	3	0	0	0	0.14603	1	11708	11708		68.787	30.975	1	293380			49271	3040	32464	32605	49902	49902					-0.059661825624516496
VYTTMAEHF	9	Unmodified	_VYTTMAEHF_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7501220703125	2	549.749867	1097.48518	0.34018	0.00018702	0.039008	2.1445E-05	0.37919	0.00020846	549.7499730420101	35.817	0.21951	35.817	35.732	35.952	0					30	10	4	0	0	0	0.087582	1	12109	12109		82.305	18.999	1	428330			49272	3040	32464	32605	49903	49903					-0.059661825624516496
VYTTMAEHF	9	Unmodified	_VYTTMAEHF_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7503662109375	2	549.749867	1097.48518	1.7138	0.00094214	-1.0593	-0.00058235	0.65445	0.00035979	549.7493568308507	35.989	0.43925	35.989	35.921	36.36	0					37	13	4	0	0	0	0.013383	1	13976	13976		133.81	75.031	1	3479600			49273	3040	32464	32605	49904	49904					-0.059661825624516496
VYTTMAEHF	9	Unmodified	_VYTTMAEHF_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;TSPAN1|p.T119M|1|0.33|ENSG00000117472|chr1:46184801-46184801|C/T|missense_variant	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.750244140625	2	549.749867	1097.48518	1.1559	0.00063548	-0.80504	-0.00044257	0.3509	0.00019291	549.7495225827049	35.81	0.22808	35.81	35.712	35.94	0					18	8	3	0	0	0	0.087582	1	12765	12765		82.305	27.529	1	386180			49274	3040	32464	32605	49905	49905					-0.059661825624516496
VYTTNIQEL	9	Unmodified	_VYTTNIQEL_					0	0	0		ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000529915.1_1_11:58322280-58343350:-|nuORF	ENSG00000110031|ENST00000395074|LPXN	ENSG00000110031|ENST00000395074|LPXN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.7820434570312	2	540.782222	1079.54989	0.28148	0.00015222	-0.61938	-0.00033495	-0.3379	-0.00018273	540.7813698777411	42.353	0.19082	42.353	42.295	42.486	0					20	10	3	0	0	0	0.21419	1	16041	16041		59.931	5.2084	1	139450			49275	2604	32465	32606	49906	49906					0.013297155151803963
VYTTNIQEL	9	Unmodified	_VYTTNIQEL_					0	0	0		ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000529915.1_1_11:58322280-58343350:-|nuORF	ENSG00000110031|ENST00000395074|LPXN	ENSG00000110031|ENST00000395074|LPXN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.782958984375	2	540.782222	1079.54989	1.9921	0.0010773	-2.7143	-0.0014678	-0.72218	-0.00039054	540.7802128832536	42.295	0.24297	42.295	42.188	42.431	0					16	11	2	0	0	0	0.22837	1	16612	16612		58.23	5.2932	1	64751			49276	2604	32465	32606	49907	49907					0.013297155151803963
VYTTNTILL	9	Unmodified	_VYTTNTILL_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;DSC2|p.T412Pfs*8|1|0.47|ENSG00000134755|chr18:31082267-31082267|T/-|frameshift_variant;nc|ENSG00000134755|Q02487-2|DSC2;DSC2|p.A800Lfs*56|1|0.25|ENSG00000134755|chr18:31069004-31069004|C/-|frameshift_variant	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.2975463867188	2	519.297507	1036.58046	0.060235	3.128E-05	0.46051	0.00023914	0.52075	0.00027042	519.2975939516044	50.266	0.31212	50.266	50.177	50.489	0					38	18	3	0	0	0	0.11898	1	18119	18119		75.043	6.5586	1	587120			49277	3938	32466	32607	49908	49908					0.06363493900244066
VYTTTVHW	8	Unmodified	_VYTTTVHW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.2541198730469	2	503.753267	1005.49198	0.75902	0.00038236	-0.16721	-8.4232E-05	0.59181	0.00029813	503.75287674639924	36.935	0.44554	36.935	36.784	37.23	0					24	12	4	0	0	0	0.4723	1	13966	13966		62.978	31.449	1	185240			49278	6476	32467	32608	49909	49909					-0.010545016195806056
VYTTTVHW	8	Unmodified	_VYTTTVHW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.75372314453125	2	503.753267	1005.49198	1.0177	0.00051269	-1.0263	-0.00051701	-0.0085705	-4.3174E-06	503.7528850751871	36.911	0.29368	36.911	36.741	37.035	0					19	9	3	0	0	0	0.65276	1	14406	14406		40.573	0	1	308760			49279	6476	32467	32608	49910	49910					-0.010545016195806056
VYTTTVHW	8	Unmodified	_VYTTTVHW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7530822753906	2	503.753267	1005.49198	0.12491	6.2924E-05	-0.5327	-0.00026835	-0.40779	-0.00020543	503.7529916725725	36.703	0.16402	36.703	36.637	36.801	0					12	7	2	0	0	0	0.6282	1	13138	13138		44.531	3.9584	1	39553			49280	6476	32467	32608	49911	49911					-0.010545016195806056
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.2964477539062	2	560.295299	1118.57605	0.49838	0.00027924	0.53893	0.00030196	1.0373	0.0005812	560.2952081049257	44.519	0.18783	44.519	44.383	44.571	0					15	11	2	0	0	0	0.25109	1	16664	16664		55.504	17.693	1	69578			49281	6476	32468	32609	49912	49912					0.021500294773204587
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.2957763671875	2	560.295299	1118.57605	1.7985	0.0010077	-0.54112	-0.00030319	1.2574	0.00070451	560.2949114488633	44.488	0.26947	44.488	44.381	44.651	0					28	14	3	0	0	0	0.043797	1	17305	17305		97.473	53.356	1	241000			49282	6476	32468	32609	49913	49913					0.021500294773204587
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.2962036132812	2	560.295299	1118.57605	1.8211	0.0010203	-0.57314	-0.00032113	1.2479	0.00069921	560.2948928111412	44.419	0.40366	44.419	44.309	44.713	0					33	16	3	0	0	0	0.13519	1	17776	17776		71.296	35.677	1	354310			49283	6476	32468	32609	49914	49914					0.021500294773204587
VYVATRPTI	9	Unmodified	_VYVATRPTI_					0	0	0		ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2971496582031	2	510.297842	1018.58113	-1.8103	-0.00092381	1.4231	0.00072618	-0.38728	-0.00019763	510.29855843755155	31.395	0.14257	31.395	31.332	31.475	0					5	3	2	0	0	0	0.36892	1	10829	10829		44.377	5.3557	1	45997			49284	5850	32469	32610	49915	49915					0.07258333339962064
VYVDAVGQFL	10	Unmodified	_VYVDAVGQFL_					0	0	0		nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF;CEP104|p.C757Vfs*24|1|0.47|ENSG00000116198|chr1:3825853-3825853|A/-|frameshift_variant;ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104	nc|ENSG00000116198|O60308-3|CEP104	nc|ENSG00000116198|O60308-3|CEP104	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7973022460938	2	555.795132	1109.57571	3.5468	0.0019713	0.35171	0.00019548	3.8985	0.0021668	555.7954322591771	26.026	0.26944	26.026	25.915	26.185	0					14	5	4	0	0	0	0.056886	1	9152	9152		107.01	32.752	1	2628100			49285	475	32470	32611	49916	49916					0.0253060975749122
VYVDKLAEL	9	Unmodified	_VYVDKLAEL_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2977294921875	2	525.297507	1048.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.736	1	41.736	41.236	42.236	0								0	0	0	0.15451	1	16411	16411		58.782	0	1				49286	6249	32471	32612	49917	49917					0.05811493900228015
VYVDKVEKM	9	Unmodified	_VYVDKVEKM_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.797119140625	2	555.796817	1109.57908	0.57773	0.0003211	0.092379	5.1344E-05	0.67011	0.00037245	555.7968527374857	26.078	0.17841	26.078	25.986	26.164	0					12	4	4	0	0	0	0.040209	1	8957	8957		99.013	5.8175	1	1075600			49287	3459	32472	32613	49918	49918					0.028675365398157737
VYVDKVEKM	9	Unmodified	_VYVDKVEKM_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.7974243164062	2	555.796817	1109.57908	1.6744	0.00093063	-0.41566	-0.00023102	1.2587	0.00069961	555.7966302851544	26.075	0.51073	26.075	25.967	26.477	0					14	10	2	0	0	0	0.029571	1	9299	9299		109.44	32.665	1	2854300			49288	3459	32472	32613	49919	49919					0.028675365398157737
VYVDKVEKM	9	Unmodified	_VYVDKVEKM_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.797119140625	2	555.796817	1109.57908	1.1315	0.00062889	-0.95607	-0.00053138	0.17544	9.7511E-05	555.7964228949452	25.908	0.23548	25.908	25.778	26.013	0					7	3	3	0	0	0	0.035106	1	8277	8277		104.01	24.301	1	204290			49289	3459	32472	32613	49920	49920					0.028675365398157737
VYVDKVEKM	9	Unmodified	_VYVDKVEKM_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	555.7968139648438	2	555.796817	1109.57908	-1.0188	-0.00056622	1.1629	0.00064636	0.14418	8.0134E-05	555.7974761612508	25.915	0.31423	25.915	25.767	26.081	0					10	5	4	0	0	0	0.040209	1	8266	8266		99.013	22.239	1	408440			49290	3459	32472	32613	49921	49921					0.028675365398157737
VYVDKVEKM	9	Unmodified	_VYVDKVEKM_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.7971801757812	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.067	1	26.067	25.567	26.567	0								0	0	0	0.023427	1	9162	9162		99.013	11.317	1				49291	3459	32472	32613	49922	49922					0.028675365398157737
VYVEKISFL	9	Unmodified	_VYVEKISFL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E;LRRC8E|p.P454Rfs*33|1|0.35|ENSG00000171017|chr19:7899878-7899878|C/-|frameshift_variant	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.3160400390625	2	549.3157	1096.61685	1.8383	0.0010098	-0.73372	-0.00040304	1.1046	0.00060677	549.3149694738223	48.215	0.077282	48.215	48.167	48.245	0					5	3	2	0	0	0	0.25761	1	19182	19182		54.722	10.606	1	50851			49292	6273	32473	32614	49923	49923					0.07240370796944262
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.3011474609375	2	539.300581	1076.58661	0.89848	0.00048455	-0.34772	-0.00018753	0.55075	0.00029702	539.300312816548	34.527	0.22698	34.527	34.435	34.662	0					19	9	3	0	0	0	0.36892	1	11279	11279		44.377	3.599	1	185910			49293	1810	32474	32615	49924	49924					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	539.3009033203125	2	539.300581	1076.58661	0.2521	0.00013596	0.13645	7.3589E-05	0.38855	0.00020954	539.3004107904801	34.808	0.66459	34.808	34.641	35.305	0					34	17	3	0	0	0	0.10506	1	12985	12985		78.264	32.292	1	1034200			49294	1810	32474	32615	49925	49925					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.3016357421875	2	539.300581	1076.58661	-0.14051	-7.5775E-05	0.60402	0.00032575	0.46352	0.00024998	539.3009009575501	34.604	0.29281	34.604	34.519	34.811	0					21	13	2	0	0	0	0.19605	1	11669	11669		62.107	14.45	1	329630			49295	1810	32474	32615	49926	49926					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.3008422851562	2	539.300581	1076.58661	1.9401	0.0010463	-1.3904	-0.00074985	0.54971	0.00029646	539.2997735440064	34.801	0.46196	34.801	34.686	35.148	0					22	13	2	0	0	0	0.02953	1	13431	13431		109.48	47.371	1	1945900			49296	1810	32474	32615	49927	49927					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3010864257812	2	539.300581	1076.58661	2.0645	0.0011134	-1.045	-0.00056356	1.0195	0.00054982	539.3000871951865	34.728	0.55846	34.728	34.62	35.179	0					19	11	2	0	0	0	0.04067	1	13349	13349		98.582	29.736	1	1617200			49297	1810	32474	32615	49928	49928					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3013916015625	2	539.300581	1076.58661	3.4294	0.0018495	-2.5991	-0.0014017	0.83029	0.00044778	539.2980974533496	34.735	1.0111	34.735	34.506	35.518	0					45	20	4	0	0	0	0.032383	1	13343	13343		106.68	39.189	1	3073500			49298	1810	32474	32615	49929	49929					0.05138012131760661
VYVERQQDY	9	Unmodified	_VYVERQQDY_					0	0	0			REV__CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant	REV__CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2905883789062	2	600.288202	1198.56185	3.1189	0.0018723	0.085178	5.1131E-05	3.2041	0.0019234	600.2882310154995	38.083	4.4869	38.083	37.92	42.407	0					281	102	5	0	0	0	0.22377	1	15458	15458		58.782	2.3482	1	43019000	+		49299	12434	32475	32616	49930	49930					-0.029486677416116436
VYVGTLKLI	9	Unmodified	_VYVGTLKLI_					0	0	0		SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant;ENSG00000162695|ENST00000357650|SLC30A7	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.3212890625	2	503.320786	1004.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.229	1	47.229	46.729	47.729	0								0	0	0	0.36609	1	18068	18068		20.947	3.582	1				49300	5489	32476	32617	49931	49931					0.12488978522173966
VYVKDLSSF	9	Unmodified	_VYVKDLSSF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B;KIF3B-TOX2|2|fusion;KIF3B-TOX2|1|fusion	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2820434570312	2	529.281857	1056.54916	0.11225	5.9413E-05	0.90846	0.00048083	1.0207	0.00054024	529.2820391479413	40.172	0.38492	40.172	40.038	40.423	0					44	16	3	0	0	0	0.11898	1	15299	15299		75.043	32.179	1	557850			49301	2112	32477	32618	49932	49932					0.023149208661379816
VYVKDLSSF	9	Unmodified	_VYVKDLSSF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B;KIF3B-TOX2|2|fusion;KIF3B-TOX2|1|fusion	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.7850341796875	2	529.281857	1056.54916	0.44051	0.00023316	1.6095	0.00085188	2.05	0.001085	529.2822171125824	39.95	0.11188	39.95	39.894	40.006	0					9	6	2	0	0	0	0.36892	1	13399	13399		44.377	3.599	1	84111			49302	2112	32477	32618	49933	49933					0.023149208661379816
VYVKDLSSF	9	Unmodified	_VYVKDLSSF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B;KIF3B-TOX2|2|fusion;KIF3B-TOX2|1|fusion	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2822265625	2	529.281857	1056.54916	0.28607	0.00015141	0.16229	8.5899E-05	0.44836	0.00023731	529.2820518067167	40.128	0.32556	40.128	40.037	40.362	0					19	12	2	0	0	0	0.063171	1	15802	15802		90.601	15.558	1	427440			49303	2112	32477	32618	49934	49934					0.023149208661379816
VYVKHSISF	9	Unmodified	_VYVKHSISF_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.5342712402344	3	360.53432	1078.58113	0.72876	0.00026274	-0.79368	-0.00028615	-0.06492	-2.3406E-05	360.53400190806366	29.776	0.44361	29.776	29.655	30.098	0					20	11	3	0	0	0	0.50461	1	10682	10682		47.657	24.135	1	500540			49304	7054	32478	32619	49935	49935					0.04498333339938654
VYVPFQRRI	9	Unmodified	_VYVPFQRRI_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.3433227539062	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.501	1	53.501	53.001	54.001	0								0	0	0	0.37146	1	19551	19551		19.36	0.25645	1		+		49305	14532	32479	32620	49936	49936					0.09549106250847217
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	552.7988891601562	2	552.297842	1102.58113	1.318	0.00072791	-0.81891	-0.00045228	0.49907	0.00027563	552.2973383511638	38.291	0.18001	38.291	38.177	38.357	0					19	10	3	0	0	0	0.34452	1	12476	12476		31.53	3.6476	1	122250			49306	7299	32480	32621	49937	49937					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.2984008789062	2	552.297842	1102.58113	0.60832	0.00033598	0.50849	0.00028084	1.1168	0.00061681	552.2977829234305	38.583	0.38508	38.583	38.485	38.87	0					27	15	3	0	0	0	0.02429	1	14650	14650		98.629	41.908	1	754040			49307	7299	32480	32621	49938	49938					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2984008789062	2	552.297842	1102.58113	1.6014	0.00088444	-0.32053	-0.00017703	1.2809	0.00070741	552.2973697778292	38.577	0.39822	38.577	38.445	38.843	0					29	14	3	0	0	0	0.04067	1	15118	15118		82.241	27.464	1	466200			49308	7299	32480	32621	49939	49939					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.2979736328125	2	552.297842	1102.58113	0.090604	5.004E-05	0.17494	9.6619E-05	0.26554	0.00014666	552.2980905278348	38.563	0.10567	38.563	38.461	38.567	0					6	3	2	0	0	0	0.054723	1	15125	15125		87.696	23.489	1	132640			49309	7299	32480	32621	49940	49940					0.033943333399292897
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;AP3D1|p.A531T|1|0.3|ENSG00000065000|chr19:2118723-2118723|C/T|missense_variant	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	531.3218383789062	2	531.321317	1060.62808	0.38444	0.00020426	0.47984	0.00025495	0.86428	0.00045921	531.3214378802919	39.079	0.17492	39.079	38.99	39.165	0					22	10	3	0	0	0	0.087582	1	12699	12699		82.305	32.863	1	231700			49310	1361	32481	32622	49941	49941					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;AP3D1|p.A531T|1|0.3|ENSG00000065000|chr19:2118723-2118723|C/T|missense_variant	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.3213500976562	2	531.321317	1060.62808	0.1204	6.3969E-05	0.7049	0.00037453	0.8253	0.0004385	531.3215726891954	39.384	0.3101	39.384	39.271	39.581	0					34	11	4	0	0	0	0.018419	1	14977	14977		124.59	54.967	1	1378400			49311	1361	32481	32622	49942	49942					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;AP3D1|p.A531T|1|0.3|ENSG00000065000|chr19:2118723-2118723|C/T|missense_variant	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3228759765625	2	531.321317	1060.62808	-0.16913	-8.9863E-05	1.4318	0.00076073	1.2626	0.00067087	531.3220843101018	39.154	0.15014	39.154	39.046	39.197	0					18	8	3	0	0	0	0.14603	1	13161	13161		68.787	15.85	1	258130			49312	1361	32481	32622	49943	49943					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;AP3D1|p.A531T|1|0.3|ENSG00000065000|chr19:2118723-2118723|C/T|missense_variant	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.3223876953125	2	531.321317	1060.62808	0.34036	0.00018084	0.65458	0.00034779	0.99494	0.00052863	531.3215880226591	39.139	0.061752	39.139	39.113	39.175	0					5	3	2	0	0	0	0.18605	1	13173	13173		63.306	17.354	1	45480			49313	1361	32481	32622	49944	49944					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;AP3D1|p.A531T|1|0.3|ENSG00000065000|chr19:2118723-2118723|C/T|missense_variant	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3215942382812	2	531.321317	1060.62808	1.7207	0.00091423	-1.0057	-0.00053433	0.71502	0.00037991	531.3207143409348	39.33	0.26573	39.33	39.25	39.516	0					27	9	4	0	0	0	0.0051889	1	15458	15458		157.21	72.048	1	2892500			49314	1361	32481	32622	49945	49945					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;AP3D1|p.A531T|1|0.3|ENSG00000065000|chr19:2118723-2118723|C/T|missense_variant	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.3217163085938	2	531.321317	1060.62808	0.28791	0.00015297	0.46743	0.00024836	0.75535	0.00040133	531.3215472309338	39.323	0.21827	39.323	39.237	39.456	0					18	7	3	0	0	0	0.027316	1	15456	15456		111.65	47.441	1	665190			49315	1361	32481	32622	49946	49946					0.10019192891104467
VYVRGSRR	8	Unmodified	_VYVRGSRR_					0	0	0		YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant;ENSG00000163872|ENST00000305135|YEATS2	YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.792236328125	2	496.79105	991.567546	2.8876	0.0014345	-1.3429	-0.00066716	1.5446	0.00076736	496.7902871375541	38.087	0.48073	38.087	37.869	38.35	0					23	10	3	0	0	0	0.6088	1	14925	14925		47.657	47.657	1	884690			49316	5615	32482	32623	49947	49947					0.0714252035137406
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.284912109375	2	546.285266	1090.55598	1.9222	0.0010501	-1.6749	-0.00091498	0.24729	0.00013509	546.284388972027	26.048	0.31372	26.048	25.837	26.151	0					16	6	3	0	0	0	0.11411	1	9142	9142		60.118	10.094	1	688990			49317	6246	32483	32624	49948	49948					0.0143227853739063
VYVTYQTW	8	Unmodified	_VYVTYQTW_					0	0	0			REV__IGF1R|p.A578T|1|0.44|ENSG00000140443|chr15:98913186-98913186|G/A|missense_variant	REV__IGF1R|p.A578T|1|0.44|ENSG00000140443|chr15:98913186-98913186|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2631225585938	2	530.260925	1058.5073	1.6471	0.00087341	-0.53258	-0.00028241	1.1146	0.00059101	530.2606144257438	39.915	2.3018	39.915	38.729	41.03	0					164	49	5	0	0	0	0.66372	1	16116	16116		38.806	10.725	1	2372700	+		49318	20758	32484	32625	49949	49949					-0.019616348223962632
VYVVAAKR	8	Unmodified	_VYVVAAKR_					0	0	0		tr|U7SGB4|U7SGB4_FUSNUAcetyl-CoAC-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02245PE=3SV=1	tr|U7SGB4|U7SGB4_FUSNUAcetyl-CoAC-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02245PE=3SV=1	tr|U7SGB4|U7SGB4_FUSNUAcetyl-CoAC-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02245PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.28204345703125	2	453.281995	904.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.081	1	26.081	25.581	26.581	0								0	0	0	1.7419	1	8156	8156		29.842	4.3914	1				49319	22578	32485	32626	49950	49950					0.09334385376655518
VYVVDNRQ	8	Unmodified	_VYVVDNRQ_					0	0	0			REV__TGM7|p.S214Y|1|0.37|ENSG00000159495|chr15:43287587-43287587|G/T|missense_variant	REV__TGM7|p.S214Y|1|0.37|ENSG00000159495|chr15:43287587-43287587|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7637939453125	2	496.761623	991.508694	2.8908	0.001436	1.5388	0.0007644	4.4296	0.0022004	496.76219976013215	37.725	0.81504	37.725	37.535	38.35	0					53	17	6	0	0	0	0.25873	1	14784	14784		96.19	24.313	1	9181400	+		49320	15720	32486	32627	49951	49951					0.012599992663808735
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.76373291015625	2	496.763635	991.512717	-0.058978	-2.9298E-05	0.65799	0.00032687	0.59901	0.00029757	496.76380688655325	37.525	0.27605	37.525	37.41	37.686	0					31	15	3	0	0	0	0.0072873	1	12287	12287		148.21	94.855	1	680410			49321	6251	32487	32628	49952	49952					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7634582519531	2	496.763635	991.512717	-0.32369	-0.0001608	0.5469	0.00027168	0.22322	0.00011089	496.7636466114351	37.815	0.25346	37.815	37.695	37.949	0					34	9	5	0	0	0	0.0072873	1	14363	14363		148.21	76.329	1	4663600			49322	6251	32487	32628	49953	49953					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.2655334472656	2	496.763635	991.512717	0.76579	0.00038042	-0.74806	-0.00037161	0.017729	8.807E-06	496.7630974671181	37.78	0.79918	37.78	37.651	38.45	0					60	27	5	0	0	0	0.05357	1	14784	14784		94.006	27.577	1	6272000			49323	6251	32487	32628	49954	49954					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7633972167969	2	496.763635	991.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.815	1	37.815	37.315	38.315	0								0	0	0	0.063485	1	14811	14811		82.305	5.5309	1				49324	6251	32487	32628	49955	49955					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.7642517089844	2	496.763635	991.512717	0.14882	7.3927E-05	0.2924	0.00014525	0.44122	0.00021918	496.7638012660997	37.584	0.33574	37.584	37.452	37.787	0					36	16	3	0	0	0	0.024477	1	13436	13436		114.59	56.775	1	434550			49325	6251	32487	32628	49956	49956					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.7633056640625	2	496.763635	991.512717	0.97936	0.00048651	-1.0371	-0.00051518	-0.057718	-2.8672E-05	496.7631692493958	37.743	0.443	37.743	37.596	38.039	0					24	9	3	0	0	0	0.0012464	1	14751	14751		180.49	103.65	1	4937000			49326	6251	32487	32628	49957	49957					0.01662088760087954
VYYTFWII	8	Unmodified	_VYYTFWII_					0	0	0		ENST00000366187.2_1_2:39681444-39681540:+|nuORF	ENST00000366187.2_1_2:39681444-39681540:+|nuORF	ENST00000366187.2_1_2:39681444-39681540:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7914428710938	2	552.791861	1103.56917	0.62084	0.00034319	-1.6048	-0.00088715	-0.98401	-0.00054395	552.7907958913394	41.28	0.25134	41.28	41.181	41.432	0					21	12	2	0	0	0	0.68754	1	15675	15675		35.201	0	1	97087			49327	8889	32488	32629	49958	49958					0.02152716596742721
WAAAGLSSEA	10	Unmodified	_WAAAGLSSEA_					0	0	0		ENST00000581571.5_1_18:6927563-6928939:-|nuORF;ENST00000581725.5_1_18:6926489-6928939:-|nuORF	ENST00000581571.5_1_18:6927563-6928939:-|nuORF	ENST00000581571.5_1_18:6927563-6928939:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.7321472167969	2	481.732532	961.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.189	1	31.189	30.689	31.689	0								0	0	0	0.19992	1	11634	11634		64.207	7.575	1				49328	10874	32489	32630	49959	49959					-0.031756823789010014
WAAAGPARR	9	Unmodified	_WAAAGPARR_					0	0	0		CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant;ENST00000552692.5_1_12:56120939-56121008:-|nuORF	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.2666015625	2	478.264668	954.514782	-1.4568	-0.00069672	4.1022	0.0019619	2.6454	0.0012652	478.26658752414306	40.941	0.19021	40.941	40.814	41.005	0					7	5	2	0	0	0	0.47428	1	13650	13650		35.201	0	1	65090			49329	431	32490	32631	49960	49960					0.035705622885643606
WAAFNNVL	8	Unmodified	_WAAFNNVL_					0	0	0			REV__ENST00000495427.1_2_1:46810505-46812688:+|nuORF	REV__ENST00000495427.1_2_1:46810505-46812688:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7418212890625	2	467.742702	933.470852	-1.0526	-0.00049233	0.77076	0.00036052	-0.2818	-0.00013181	467.7430121191004	39.353	0.42445	39.353	39.242	39.667	0					57	23	4	0	0	0	0.75243	1	13318	13318		26.796	26.796	1	673110	+		49330	14196	32491	32632	49961	49961					0.001455330715771197
WAAVQVLP	8	Unmodified	_WAAVQVLP_					0	0	0			REV__ENST00000565642.5_1_16:71777395-71799448:-|nuORF	REV__ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2534484863281	2	442.255446	882.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.548	1	24.548	24.048	25.048	0								0	0	0	1.7419	1	7529	7529		25.45	3.7478	1		+		49331	20338	32492	32633	49962	49962					0.050390075940072165
WAAWSFSCL	9	Unmodified	_WAAWSFSCL_					0	0	0			REV__ENST00000393389.7_1_11:82922362-82922422:+|nuORF	REV__ENST00000393389.7_1_11:82922362-82922422:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.7413940429688	2	535.741845	1069.46914	-1.3768	-0.00073758	0.35357	0.00018942	-1.0232	-0.00054816	535.7423134493426	30.829	0.11138	30.829	30.753	30.864	0					8	3	3	0	0	0	0.50461	1	10531	10531		31.955	1.4512	1	126580	+		49332	18849	32493	32634	49963	49963					-0.06281844008685766
WADHEDYM	8	Unmodified	_WADHEDYM_					0	0	0		ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.701416015625	2	533.700374	1065.3862	0.28965	0.00015459	1.5292	0.00081614	1.8189	0.00097073	533.7013489457648	17.374	0.1985	17.374	17.285	17.483	0					6	4	2	0	0	0	0.75243	1	5162	5162		26.796	0.10319	1	186770			49333	4311	32494	32635	49964	49964					-0.14388205527347964
WADQIVLQ	8	Unmodified	_WADQIVLQ_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	487.76898193359375	2	486.761092	971.507631	0.70754	0.0003444	0.66412	0.00032327	1.3717	0.00066767	486.7603709955835	38.176	0.39152	38.176	38.01	38.402	0					31	16	3	0	0	0	0.59773	1	14462	14462		49.442	15.269	1	199410			49334	2971	32495	32636	49965	49965					0.02073784897470432
WADVRSCII	9	Unmodified	_WADVRSCII_					0	0	0		sp|P16799|CVC1_HCMVACapsidvertexcomponent1OS=Humancytomegalovirus(strainAD169)OX=10360GN=CVC1PE=1SV=1	sp|P16799|CVC1_HCMVACapsidvertexcomponent1OS=Humancytomegalovirus(strainAD169)OX=10360GN=CVC1PE=1SV=1	sp|P16799|CVC1_HCMVACapsidvertexcomponent1OS=Humancytomegalovirus(strainAD169)OX=10360GN=CVC1PE=1SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	531.7720336914062	2	531.773677	1061.5328	-1.2519	-0.00066575	-3.1593	-0.0016801	-4.4113	-0.0023458	532.2737324582483	40.249	0.14779	40.249	40.203	40.351	0					13	7	2	0	0	0	0.25716	1	14315	14315		54.776	0	1	67125			49335	22476	32496	32637	49966	49966					0.004495164284207931
WAEEGQRVL	9	Unmodified	_WAEEGQRVL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;PLEKHG4|p.L616Wfs*32|1|0.43|ENSG00000196155|chr16:67284862-67284862|G/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2800903320312	2	544.28018	1086.54581	1.8047	0.00098225	-1.6346	-0.00088969	0.17005	9.2556E-05	544.2790402366066	33.477	0.19688	33.477	33.404	33.601	0					11	6	2	0	0	0	0.17062	1	10881	10881		58.23	0	1	97199			49336	7332	32497	32638	49967	49967					0.005996708121301708
WAEEGQRVL	9	Unmodified	_WAEEGQRVL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;PLEKHG4|p.L616Wfs*32|1|0.43|ENSG00000196155|chr16:67284862-67284862|G/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2803344726562	2	544.28018	1086.54581	1.8742	0.0010201	-1.0262	-0.00055853	0.84797	0.00046154	544.2796759725081	33.7	0.5514	33.7	33.379	33.931	0					25	14	3	0	0	0	0.024312	1	12478	12478		109.48	21.782	1	842230			49337	7332	32497	32638	49968	49968					0.005996708121301708
WAEEGQRVL	9	Unmodified	_WAEEGQRVL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;PLEKHG4|p.L616Wfs*32|1|0.43|ENSG00000196155|chr16:67284862-67284862|G/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.2803955078125	2	544.28018	1086.54581	0.43177	0.000235	0.026296	1.4312E-05	0.45807	0.00024932	544.2802002776779	33.541	0.16765	33.541	33.434	33.602	0					11	6	2	0	0	0	0.14578	1	11255	11255		62.107	62.107	1	198490			49338	7332	32497	32638	49969	49969					0.005996708121301708
WAEEGQRVL	9	Unmodified	_WAEEGQRVL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;PLEKHG4|p.L616Wfs*32|1|0.43|ENSG00000196155|chr16:67284862-67284862|G/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	544.2800903320312	2	544.28018	1086.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.699	1	33.699	33.199	34.199	0								0	0	0	0.047883	1	12918	12918		80.455	14.025	1				49339	7332	32497	32638	49970	49970					0.005996708121301708
WAEEGQRVL	9	Unmodified	_WAEEGQRVL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;PLEKHG4|p.L616Wfs*32|1|0.43|ENSG00000196155|chr16:67284862-67284862|G/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2802124023438	2	544.28018	1086.54581	1.0921	0.00059439	-0.8873	-0.00048294	0.20476	0.00011145	544.2796079738469	33.497	0.23055	33.497	33.35	33.58	0					8	6	2	0	0	0	0.14673	1	11757	11757		61.691	8.7546	1	222330			49340	7332	32497	32638	49971	49971					0.005996708121301708
WAELLCFQ	8	Carbamidomethyl (C)	_WAELLC(Carbamidomethyl (C))FQ_	WAELLC(1)FQ		WAELLC(60)FQ		0	1	0			REV__ENST00000323646.9_1_11:63341157-63341505:-|nuORF	REV__ENST00000323646.9_1_11:63341157-63341505:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.8042602539062	2	533.754953	1065.49535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.221	1	17.221	16.721	17.721	0								0	0	0	1.7419	1	5076	5076		60.294	17.819	1		+		49341	18342	32498	32639	49972	49972	647				-0.034775748372339876
WAELLSGCH	9	Unmodified	_WAELLSGCH_					0	0	0		WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant;ENSG00000174776|ENST00000682715|WDR49	WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.23516845703125	2	508.236927	1014.4593	-0.38693	-0.00019665	-3.4372	-0.0017469	-3.8241	-0.0019435	508.2353573659795	13.729	0.10835	13.729	13.67	13.778	0					4	2	2	0	0	0	0.50461	1	3418	3418		31.955	1.4512	1	313500			49342	6511	32499	32640	49973	49973					-0.04735032014082208
WAFQIPAGL	9	Unmodified	_WAFQIPAGL_					0	0	0			REV__ENSG00000157796|ENST00000399820|WDR19	REV__ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.2753601074219	2	501.774003	1001.53345	0.96769	0.00048556	0.59511	0.00029861	1.5628	0.00078417	502.2750494062278	17.02	0.32083	17.02	16.896	17.217	0					14	6	4	0	0	0	0.25716	1	4985	4985		38.806	0	1	1729900	+		49343	15669	32500	32641	49974	49974					0.0327467913974715
WAGATSLAAL	10	Unmodified	_WAGATSLAAL_					0	0	0		ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.76104736328125	2	480.761092	959.507631	0.67814	0.00032603	-0.50536	-0.00024296	0.17278	8.3067E-05	480.7608121913656	33.122	0.39854	33.122	33.003	33.402	0					12	9	2	0	0	0	0.51121	1	12693	12693		44.117	3.3386	1	298420			49344	3443	32501	32642	49975	49975					0.026257848974637454
WAGGLVAVL	9	Unmodified	_WAGGLVAVL_					0	0	0		ENST00000356384.4_1_9:137331265-137331760:+|nuORF	ENST00000356384.4_1_9:137331265-137331760:+|nuORF	ENST00000356384.4_1_9:137331265-137331760:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.26153564453125	2	443.263271	884.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.009	1	27.009	26.509	27.509	0								0	0	0	0.28056	1	8779	8779		39.021	5.5059	1				49345	8807	32502	32643	49976	49976					0.06511294111044208
WAGKKTGISP	10	Unmodified	_WAGKKTGISP_					0	0	0		ENST00000406606.7_3_9:136628319-136628436:-|nuORF	ENST00000406606.7_3_9:136628319-136628436:-|nuORF	ENST00000406606.7_3_9:136628319-136628436:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7958374023438	2	522.795466	1043.57638	1.6251	0.00084958	-1.2548	-0.00065601	0.37026	0.00019357	522.7947155575982	40.619	0.45357	40.619	40.439	40.892	0					18	8	3	0	0	0	0.49411	1	16133	16133		45.972	0.020292	1	568030			49346	9284	32503	32644	49977	49977					0.056334491971938405
WAGPGWGRRL	10	Unmodified	_WAGPGWGRRL_					0	0	0		ENST00000455441.5_1_3:186648403-186648589:+|nuORF	ENST00000455441.5_1_3:186648403-186648589:+|nuORF	ENST00000455441.5_1_3:186648403-186648589:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	385.8766174316406	3	385.877192	1154.60975	0.54607	0.00021071	-1.5207	-0.00058681	-0.97465	-0.0003761	385.87653441844043	28.337	0.20251	28.337	28.248	28.451	0					15	6	3	0	0	0	0.56931	1	8837	8837		37.812	2.6595	1	120000			49347	9680	32504	32645	49978	49978					0.03862495759744888
WAGVLALAEMY	11	Unmodified	_WAGVLALAEMY_					0	0	0			REV__HSDL1|p.R55Afs*8|1|0.37|ENSG00000103160|chr16:84131159-84131159|G/-|frameshift_variant	REV__HSDL1|p.R55Afs*8|1|0.37|ENSG00000103160|chr16:84131159-84131159|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	612.3069458007812	2	612.310092	1222.60563	-1.9891	-0.0012179	-1.4044	-0.00085995	-3.3935	-0.0020779	612.3084836504613	28.593	0.2877	28.593	28.506	28.793	0					12	7	2	0	0	0	0.7326	1	9541	9541		24.519	1.9395	1	57444	+		49348	13667	32505	32646	49979	49979					0.0032322543115697044
WAGVSSFSSG	10	Unmodified	_WAGVSSFSSG_					0	0	0		nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7240905761719	2	492.724707	983.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.15	1	12.15	11.65	12.65	0								0	0	0	0.4201	1	2663	2663		17.365	4.4058	1				49349	11694	32506	32647	49980	49980					-0.05751968895935988
WAIDNVYI	8	Unmodified	_WAIDNVYI_					0	0	0		RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant;RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.25537109375	2	497.255643	992.496732	-0.057514	-2.8599E-05	-1.6255	-0.00080829	-1.683	-0.00083689	497.2551871593234	30.989	0.20171	30.989	30.893	31.095	0					15	8	3	0	0	0	0.52345	1	9915	9915		57.811	5.5121	1	212250			49350	7296	32507	32648	49981	49981					0.000183825231715673
WAIKHQTSVS	10	Unmodified	_WAIKHQTSVS_					0	0	0		ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	579.796875	2	578.809105	1155.60366	1.7285	0.0010005	1.8693	0.001082	3.5978	0.0020824	578.8101893484546	39.037	1.3635	39.037	38.824	40.188	0					48	30	3	0	0	0	0.54197	1	15531	15531		40.778	7.9657	1	279590			49351	7522	32508	32649	49982	49982					0.03207932737564079
WAKLEQDFY	9	Unmodified	_WAKLEQDFY_					0	0	0			REV__ENST00000528529.1_1_11:64889784-64893341:+|nuORF	REV__ENST00000528529.1_1_11:64889784-64893341:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	600.2903442382812	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.325	1	52.325	51.825	52.825	0								0	0	0	0.35377	1	19307	19307		24.519	2.8334	1		+		49352	15434	32509	32650	49983	49983					-0.025465782479159316
WALLCLGLL	9	Carbamidomethyl (C)	_WALLC(Carbamidomethyl (C))LGLL_	WALLC(1)LGLL		WALLC(46)LGLL		0	1	0		nc|ENSG00000186998|Q96A84-2|EMID1;nc|ENSG00000186998|Q96A84|EMID1;ENSG00000186998|ENST00000334018|EMID1	nc|ENSG00000186998|Q96A84-2|EMID1	nc|ENSG00000186998|Q96A84-2|EMID1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	353.541259765625	3	353.540418	1057.59942	3.0416	0.0010753	-0.75819	-0.00026805	2.2835	0.00080729	353.5402051604408	27.079	0.21852	27.079	26.968	27.187	0					9	4	3	0	0	0	0.35045	1	9663	9663		45.952	11.779	1	1170000			49353	7176	32510	32651	49984	49984	304				0.07292751990280522
WALRGGLL	8	Unmodified	_WALRGGLL_					0	0	0		ENSG00000261667|ENST00000562505|LY6L	ENSG00000261667|ENST00000562505|LY6L	ENSG00000261667|ENST00000562505|LY6L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	443.26605224609375	2	443.268887	884.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.529	1	49.529	49.029	50.029	0								0	0	0	1.7419	1	16315	16315		21.702	6.8375	1				49354	8052	32511	32652	49985	49985					0.07634116205190367
WALSMGGKVP	10	Unmodified	_WALSMGGKVP_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2811889648438	2	523.278595	1044.54264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.959	1	28.959	28.459	29.459	0								0	0	0	0.3998	1	10670	10670		40.778	10.275	1				49355	1753	32512	32653	49986	49986					0.02214704433777115
WALSPHSLY	9	Unmodified	_WALSPHSLY_					0	0	0			REV__ENST00000375906.5_1_6:31632217-31632316:-|nuORF	REV__ENST00000375906.5_1_6:31632217-31632316:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	358.51837158203125	3	358.51867	1072.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.908	1	19.908	19.408	20.408	0								0	0	0	0.30504	1	6090	6090		34.173	2.1384	1		+		49356	18710	32513	32654	49987	49987					0.0008147378882767953
WALSTPRMRK	10	Unmodified	_WALSTPRMRK_					0	0	0		nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF;DNAH1|p.K1480Sfs*13|1|0.07|ENSG00000114841|chr3:52359941-52359941|G/-|frameshift_variant	nc|ENSG00000114841|Q9P2D7-6|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	416.23590087890625	3	415.901008	1244.6812	-0.060507	-2.5165E-05	1.3502	0.00056153	1.2896	0.00053636	416.23554210551276	24.733	0.14109	24.733	24.643	24.784	0					5	3	2	0	0	0	0.65051	1	7773	7773		28.081	8.4546	1	48035			49357	2867	32514	32655	49988	49988					0.06864247402086221
WALTLLYLGL	10	Unmodified	_WALTLLYLGL_					0	0	0			REV__ENSG00000172324|ENST00000302040|OR5A2	REV__ENSG00000172324|ENST00000302040|OR5A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.2315979003906	3	388.23387	1161.67978	-0.67875	-0.00026351	-2.9281	-0.0011368	-3.6069	-0.0014003	388.2330475992305	16.741	0.55708	16.741	16.499	17.056	0					14	11	3	0	0	0	0.6796	1	4766	4766		24.519	0	1	298240	+		49358	16457	32515	32656	49989	49989					0.1054093658497095
WALVMFIP	8	Unmodified	_WALVMFIP_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	488.7684631347656	2	488.769874	975.525196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.851	1	18.851	18.351	19.351	0								0	0	0	1.7419	1	5000	5000		24.504	7.799	1		+		49359	17417	32516	32657	49990	49990					0.03645408898773894
WAMKMILA	8	Oxidation (M)	_WAMKM(Oxidation (M))ILA_		WAM(0.151)KM(0.849)ILA		WAM(-7.5)KM(7.5)ILA	0	0	1		ENST00000521663.1_1_8:58192902-58193274:+|nuORF	ENST00000521663.1_1_8:58192902-58193274:+|nuORF	ENST00000521663.1_1_8:58192902-58193274:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.25689697265625	2	490.258816	978.50308	0.5977	0.00029303	-2.718	-0.0013325	-2.1203	-0.0010395	490.2573030028528	40.53	0.31388	40.53	40.362	40.676	0					15	12	2	0	0	0	0.6282	1	15964	15964		44.531	7.372	2	136320			49360	10317	32517	32658	49991	49991		412			0.01296861158698448
WANVGKSL	8	Unmodified	_WANVGKSL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.74212646484375	2	437.742702	873.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.973	1	31.973	31.473	32.473	0								0	0	0	1.7419	1	10308	10308		47.657	5.2612	1				49361	2576	32518	32659	49992	49992					0.029055330715777927
WANVGKSL	8	Unmodified	_WANVGKSL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	437.7425231933594	2	437.742702	873.470852	0.61394	0.00026875	-0.90759	-0.00039729	-0.29365	-0.00012854	437.74230741638377	32.226	0.33649	32.226	32.139	32.475	0					13	8	2	0	0	0	0.39125	1	11822	11822		71.877	18.526	1	445730			49362	2576	32518	32659	49993	49993					0.029055330715777927
WANVGKSL	8	Unmodified	_WANVGKSL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.7424011230469	2	437.742702	873.470852	-0.94328	-0.00041291	0.95498	0.00041804	0.011701	5.1221E-06	437.74313630566104	32	0.18785	32	31.933	32.121	0					10	7	2	0	0	0	0.48092	1	10650	10650		62.107	14.192	1	82109			49363	2576	32518	32659	49994	49994					0.029055330715777927
WANVGKSL	8	Unmodified	_WANVGKSL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	437.74261474609375	2	437.742702	873.470852	0.70225	0.0003074	-0.20622	-9.0272E-05	0.49603	0.00021713	437.7427703130047	32.233	0.3346	32.233	32.126	32.46	0					16	7	3	0	0	0	0.57171	1	12245	12245		52.937	1.6012	1	503070			49364	2576	32518	32659	49995	49995					0.029055330715777927
WANVGKSL	8	Unmodified	_WANVGKSL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.7425231933594	2	437.742702	873.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.017	1	32.017	31.517	32.517	0								0	0	0	1.7419	1	11089	11089		79.713	33.761	1				49365	2576	32518	32659	49996	49996					0.029055330715777927
WANVGKSL	8	Unmodified	_WANVGKSL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7424621582031	2	437.742702	873.470852	-0.56823	-0.00024874	0.31341	0.00013719	-0.25482	-0.00011155	437.74283089017945	32.178	0.21885	32.178	32.068	32.287	0					9	4	3	0	0	0	0.2498	1	12117	12117		101.6	44.88	1	410390			49366	2576	32518	32659	49997	49997					0.029055330715777927
WANVGKSL	8	Unmodified	_WANVGKSL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	437.7425842285156	2	437.742702	873.470852	0.69845	0.00030574	-0.99094	-0.00043378	-0.29249	-0.00012804	437.7422746169343	32.212	0.31904	32.212	32.102	32.421	0					17	6	4	0	0	0	0.3049	1	12137	12137		82.241	30.905	1	602160			49367	2576	32518	32659	49998	49998					0.029055330715777927
WAPESAPL	8	Unmodified	_WAPESAPL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.7213439941406	2	435.721436	869.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.522	1	42.522	42.022	43.022	0								0	0	0	1.7419	1	16687	16687		71.378	5.4805	1				49368	6381	32519	32660	49999	49999					-0.011618620566764548
WAPESAPL	8	Unmodified	_WAPESAPL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.7217102050781	2	435.721436	869.428318	-0.53452	-0.0002329	0.62188	0.00027097	0.087359	3.8064E-05	435.7216737003076	42.477	0.38036	42.477	42.307	42.687	0					14	10	2	0	0	0	0.61433	1	16907	16907		46.766	2.2354	1	97913			49369	6381	32519	32660	50000	50000					-0.011618620566764548
WAPESAPLK	9	Unmodified	_WAPESAPLK_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.768798828125	2	499.768917	997.523281	-0.0020079	-1.0035E-06	-0.42286	-0.00021133	-0.42487	-0.00021234	499.7685520110621	31.269	0.27106	31.269	31.093	31.364	0					14	6	3	0	0	0	0.1424	1	11751	11751		69.628	16.276	1	201350			49370	6381	32520	32661	50001	50001					0.024420714145207967
WAPTGSGW	8	Unmodified	_WAPTGSGW_					0	0	0			REV__ENST00000392833.6_1_3:157188176-157188224:-|nuORF	REV__ENST00000392833.6_1_3:157188176-157188224:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	431.1976318359375	2	431.198128	860.381703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.808	1	39.808	39.308	40.308	0								0	0	0	1.7419	1	15162	15162		44.531	3.9584	1		+		49371	18836	32521	32662	50002	50002					-0.0540730188794214
WAQKLWES	8	Unmodified	_WAQKLWES_					0	0	0		ENSG00000149506|ENST00000278853|ZP1	ENSG00000149506|ENST00000278853|ZP1	ENSG00000149506|ENST00000278853|ZP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	524.2667236328125	2	524.266542	1046.51853	0.54429	0.00028535	-0.04632	-2.4284E-05	0.49797	0.00026107	524.2666118074667	20.088	0.09726	20.088	20.031	20.128	0					5	3	2	0	0	0	0.61938	1	5560	5560		45.952	3.0877	1	72976			49372	4891	32522	32663	50003	50003					-0.0028681272826815984
WARARPRAGD	10	Unmodified	_WARARPRAGD_					0	0	0		ENST00000334801.7_1_11:118781071-118781260:-|nuORF	ENST00000334801.7_1_11:118781071-118781260:-|nuORF	ENST00000334801.7_1_11:118781071-118781260:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.3101806640625	2	578.310138	1154.60572	-1.6482	-0.0009532	1.3146	0.00076027	-0.33361	-0.00019293	578.3104575706233	25.506	0.15607	25.506	25.414	25.57	0					7	4	2	0	0	0	0.41335	1	8141	8141		54.776	8.8041	1	31451			49373	8695	32523	32664	50004	50004					0.03460406266026439
WARGRVAL	8	Unmodified	_WARGRVAL_					0	0	0			REV__nc|ENSG00000214946|Q86UD7-2|TBC1D26	REV__nc|ENSG00000214946|Q86UD7-2|TBC1D26	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	464.7767333984375	2	464.777411	927.540269	-0.47539	-0.00022095	-1.1021	-0.00051223	-1.5775	-0.00073319	464.77682141259015	34.494	0.20264	34.494	34.376	34.579	0					11	6	2	0	0	0	0.72892	1	12195	12195		29.842	0.69198	1	149460	+		49374	17590	32524	32665	50005	50005					0.07360036810973725
WARTCFFILH	10	Unmodified	_WARTCFFILH_					0	0	0			REV__ENSG00000188211|ENST00000338965|NCR3LG1	REV__ENSG00000188211|ENST00000338965|NCR3LG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	647.3310546875	2	647.331693	1292.64883	-0.64521	-0.00041766	-0.49225	-0.00031865	-1.1375	-0.00073631	647.3314269685455	22.835	0.31625	22.835	22.628	22.944	0					19	6	4	0	0	0	0.39566	1	7752	7752		56.721	13.857	1	973340	+		49375	17160	32525	32666	50006	50006					0.014214599990964416
WASVASSL	8	Unmodified	_WASVASSL_					0	0	0		ENST00000545453.5_2_13:73355107-73355970:-|nuORF;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENST00000545453.5_2_13:73355107-73355970:-|nuORF	ENST00000545453.5_2_13:73355107-73355970:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	410.7130126953125	2	410.713611	819.412668	0.85048	0.0003493	-0.90145	-0.00037024	-0.050966	-2.0932E-05	410.71321326342655	42.907	0.60816	42.907	42.581	43.189	0					23	17	3	0	0	0	0.65276	1	17034	17034		40.573	1.7665	1	321100			49376	10577	32526	32667	50007	50007					-0.004261485737060866
WAVTVAAKALG	11	Unmodified	_WAVTVAAKALG_					0	0	0		tr|U7T636|U7T636_FUSNUPhageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00088PE=4SV=1	tr|U7T636|U7T636_FUSNUPhageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00088PE=4SV=1	tr|U7T636|U7T636_FUSNUPhageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00088PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8173828125	2	543.818941	1085.62333	0.32265	0.00017546	-3.745	-0.0020366	-3.4223	-0.0018611	543.8176802577354	27.097	0.15842	27.097	26.994	27.152	0					5	3	2	0	0	0	0.64562	1	9789	9789		32.812	0	1	269870			49377	23025	32527	32668	50008	50008					0.08394308748302137
WAVVWPSPE	9	Unmodified	_WAVVWPSPE_					0	0	0			REV__ENST00000354619.9_1_1:236433277-236445243:-|nuORF	REV__ENST00000354619.9_1_1:236433277-236445243:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.76953125	2	535.768917	1069.52328	-0.55147	-0.00029546	0.55763	0.00029876	0.0061619	3.3014E-06	535.7691005014228	32.523	0.27763	32.523	32.438	32.716	0					15	11	2	0	0	0	0.30268	1	10861	10861		50.025	9.4519	1	168410	+		49378	18501	32528	32669	50009	50009					-0.00869928585461821
WAWLMIVVL	9	Oxidation (M)	_WAWLM(Oxidation (M))IVVL_		WAWLM(1)IVVL		WAWLM(60)IVVL	0	0	1		ENST00000302640.12_1_3:4558245-4669470:+|nuORF	ENST00000302640.12_1_3:4558245-4669470:+|nuORF	ENST00000302640.12_1_3:4558245-4669470:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8224487304688	2	573.822638	1145.63072	-0.11896	-6.8263E-05	-0.83413	-0.00047864	-0.95309	-0.00054691	573.8222472274963	35.226	0.16327	35.226	35.142	35.305	0					8	4	2	0	0	0	0.21025	1	13202	13202		60.404	17.539	1	185750			49379	8501	32529	32670	50010	50010		341			0.06373325024378573
WAWLMIVVL	9	Oxidation (M)	_WAWLM(Oxidation (M))IVVL_		WAWLM(1)IVVL		WAWLM(60)IVVL	0	0	1		ENST00000302640.12_1_3:4558245-4669470:+|nuORF	ENST00000302640.12_1_3:4558245-4669470:+|nuORF	ENST00000302640.12_1_3:4558245-4669470:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.8226318359375	2	573.822638	1145.63072	-0.13758	-7.8948E-05	-0.074631	-4.2825E-05	-0.21221	-0.00012177	573.8224490320865	35.223	0.15895	35.223	35.123	35.281	0					8	4	3	0	0	0	0.21025	1	13636	13636		60.404	16.026	1	139510			49380	8501	32529	32670	50011	50011		341			0.06373325024378573
WAYGKITVEGS	11	Unmodified	_WAYGKITVEGS_					0	0	0			REV__ENSG00000139531|ENST00000266971|SUOX	REV__ENSG00000139531|ENST00000266971|SUOX	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.2070007324219	3	404.208273	1209.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.946	1	15.946	15.446	16.446	0								0	0	0	0.43372	1	3731	3731		29.551	5.3189	1		+		49381	15032	32530	32671	50012	50012					0.006570932978320343
WCAAPLAL	8	Carbamidomethyl (C)	_WC(Carbamidomethyl (C))AAPLAL_	WC(1)AAPLAL		WC(55)AAPLAL		0	1	0			REV__ENST00000553700.5_2_14:31675151-31676803:-|nuORF	REV__ENST00000553700.5_2_14:31675151-31676803:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.23468017578125	2	451.233656	900.452759	2.5312	0.0011422	0.057669	2.6022E-05	2.5888	0.0011682	451.23338130060165	32.271	0.82081	32.271	31.885	32.706	0					32	16	3	0	0	0	0.55232	1	12129	12129		54.895	54.895	1	437080	+		49382	20226	32531	32672	50013	50013	712				-0.0014492517481130562
WCCADYPFIVL	11	2 Carbamidomethyl (C)	_WC(Carbamidomethyl (C))C(Carbamidomethyl (C))ADYPFIVL_	WC(1)C(1)ADYPFIVL		WC(53)C(53)ADYPFIVL		0	2	0			REV__ENST00000383746.7_2_3:44399709-44399838:+|nuORF	REV__ENST00000383746.7_2_3:44399709-44399838:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	481.8866882324219	3	481.886036	1442.63628	-0.62162	-0.00029955	1.1604	0.0005592	0.53881	0.00025965	481.88695729970226	15.857	0.26585	15.857	15.647	15.913	0					6	5	2	0	0	0	0.38515	1	4285	4285		53.089	15.489	1	406410	+		49383	18801	32532	32673	50014	50014	672;673				-0.06733364246110796
WCEEDERKM	9	Oxidation (M)	_WCEEDERKM(Oxidation (M))_		WCEEDERKM(1)		WCEEDERKM(62)	0	0	1		ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B	ENSG00000259916|ENST00000561882|AQP7B	ENSG00000259916|ENST00000561882|AQP7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	414.503662109375	3	414.502362	1240.48526	2.828	0.0011722	-0.34215	-0.00014182	2.4858	0.0010304	414.50242607824356	35.404	0.57156	35.404	35.245	35.817	0					37	11	6	0	0	0	0.19605	1	13652	13652		62.107	17.73	1	2334800			49384	8040	32533	32674	50015	50015		328			-0.12536550624804477
WCFIILGK	8	Unmodified	_WCFIILGK_					0	0	0			REV__ENST00000433031.1_1_7:57215791-57215998:-|nuORF	REV__ENST00000433031.1_1_7:57215791-57215998:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.2747802734375	2	490.275324	978.536095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.578	1	10.578	10.078	11.078	0								0	0	0	1.7419	1	2037	2037		5.0869	0.40514	1		+		49385	19181	32534	32675	50016	50016					0.04596811273063395
WCNLSALLY	9	Unmodified	_WCNLSALLY_					0	0	0		GPR161|p.F102L|1|0.26|ENSG00000143147|chr1:168104545-168104545|G/T|missense_variant	GPR161|p.F102L|1|0.26|ENSG00000143147|chr1:168104545-168104545|G/T|missense_variant	GPR161|p.F102L|1|0.26|ENSG00000143147|chr1:168104545-168104545|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.2741088867188	2	541.770603	1081.52665	1.8545	0.0010047	1.7075	0.0009251	3.562	0.0019298	542.272988479745	37.789	0.093636	37.789	37.716	37.809	0					5	3	2	0	0	0	0.18605	1	14350	14350		63.306	7.8021	1	45732			49386	11161	32535	32676	50017	50017					-0.010850018031078434
WCRPPLPV	8	Carbamidomethyl (C)	_WC(Carbamidomethyl (C))RPPLPV_	WC(1)RPPLPV		WC(45)RPPLPV		0	1	0			REV__ENST00000527620.5_1_11:559022-559837:+|nuORF	REV__ENST00000527620.5_1_11:559022-559837:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.77490234375	2	512.77348	1023.53241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.882	1	23.882	23.382	24.382	0								0	0	0	1.7419	1	6969	6969		44.531	14.027	1		+		49387	20013	32536	32677	50018	50018	705				0.021581414991942438
WCTIKHIYA	9	Unmodified	_WCTIKHIYA_					0	0	0			REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|26|1|anti-sense	REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|26|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.7940063476562	2	567.791869	1133.56919	1.4554	0.00082638	3.1443	0.0017853	4.5997	0.0026117	567.7935792742411	20.347	0.25307	20.347	20.277	20.53	0					12	8	2	0	0	0	0.41354	1	5427	5427		40.573	6.4001	1	101580	+		49388	20811	32537	32678	50019	50019					0.007743933251049384
WCWVPAAFST	10	Unmodified	_WCWVPAAFST_					0	0	0		ENST00000245817.4_1_19:6535089-6535281:+|nuORF	ENST00000245817.4_1_19:6535089-6535281:+|nuORF	ENST00000245817.4_1_19:6535089-6535281:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.2695922851562	2	584.268227	1166.5219	1.5748	0.00092013	0.65424	0.00038225	2.2291	0.0013024	584.26849700226	39.154	0.47659	39.154	38.871	39.348	0					18	10	2	0	0	0	0.63073	1	15381	15381		30.504	4.9296	1	86701			49389	8226	32538	32679	50020	50020					-0.054698859458994775
WDDTNRDVL	9	Unmodified	_WDDTNRDVL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	567.2670288085938	2	567.264727	1132.5149	3.4711	0.001969	-0.38815	-0.00022018	3.0829	0.0017488	567.2646469936446	18.744	0.59084	18.744	18.489	19.079	0					29	12	5	0	0	0	0.1424	1	5631	5631		69.628	3.8245	1	11290000	+		49390	15204	32539	32680	50021	50021					-0.04605527292778788
WDEPERITR	9	Unmodified	_WDEPERITR_					0	0	0			REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF	REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	601.3036499023438	2	601.301644	1200.58874	0.31519	0.00018952	2.6127	0.001571	2.9279	0.0017605	601.3035692065448	22.187	0.14042	22.187	22.121	22.261	0					6	4	2	0	0	0	0.25761	1	6488	6488		56.721	1.9447	1	151770	+		49391	16194	32540	32681	50022	50022					-0.003535591304398622
WDFGLAKVL	9	Unmodified	_WDFGLAKVL_					0	0	0			REV__WDFY3|p.T1665A|1|0.22|ENSG00000163625|chr4:84766005-84766005|T/C|missense_variant	REV__WDFY3|p.T1665A|1|0.22|ENSG00000163625|chr4:84766005-84766005|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7932739257812	2	524.794935	1047.57532	-1.255	-0.00065862	-1.5427	-0.00080962	-2.7977	-0.0014682	524.7940955914956	35.496	0.23969	35.496	35.404	35.644	0					21	9	3	0	0	0	0.1236	1	12628	12628		73.975	8.1716	1	296080	+		49392	22285	32541	32682	50023	50023					0.05343234828274035
WDHYRIAL	8	Unmodified	_WDHYRIAL_					0	0	0		ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2830200195312	2	537.279983	1072.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.003	1	27.003	26.503	27.503	0								0	0	0	1.7419	1	9384	9384		40.573	4.9543	1				49393	7529	32542	32683	50024	50024					0.012042958829397321
WDLSSSLKK	9	Unmodified	_WDLSSSLKK_					0	0	0			REV__VARS|p.G435S|1|0.34|ENSG00000204394|chr6:31785290-31785290|C/T|missense_variant	REV__VARS|p.G435S|1|0.34|ENSG00000204394|chr6:31785290-31785290|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	532.2933349609375	2	532.292756	1062.57096	0.12562	6.6864E-05	-1.2441	-0.00066224	-1.1185	-0.00059537	532.2948692898685	35.9	0.61774	35.9	35.629	36.247	0					27	16	3	0	0	0	0.30951	1	13503	13503		49.442	1.7842	1	404210	+		49394	22272	32543	32684	50025	50025					0.04217725614716983
WDPATVTELK	10	Unmodified	_WDPATVTELK_					0	0	0			REV__NT5DC3|p.T536Pfs*48|1|0.14|ENSG00000111696|chr12:103777871-103777871|G/-|frameshift_variant	REV__NT5DC3|p.T536Pfs*48|1|0.14|ENSG00000111696|chr12:103777871-103777871|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	580.3016967773438	2	580.303321	1158.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.271	1	25.271	24.771	25.771	0								0	0	0	0.37129	1	7840	7840		39.253	0.44669	1		+		49395	21311	32544	32685	50026	50026					0.01913690923561262
WDPLARRG	8	Unmodified	_WDPLARRG_					0	0	0			REV__ENST00000376062.6_1_20:30253395-30253500:-|nuORF	REV__ENST00000376062.6_1_20:30253395-30253500:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.76666259765625	2	485.764501	969.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.755	1	18.755	18.255	19.255	0								0	0	0	1.7419	1	4956	4956		35.201	6.9464	1		+		49396	18714	32545	32686	50027	50027					0.028471425687030205
WDPTDDQEQ	9	Unmodified	_WDPTDDQEQ_					0	0	0			REV__PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant	REV__PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.222900390625	2	567.222725	1132.4309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.16	1	18.16	17.66	18.66	0								0	0	0	0.3119	1	5525	5525		32.812	1.2826	1		+		49397	21404	32546	32687	50028	50028					-0.13002103180338054
WDQLQSPFQ	9	Unmodified	_WDQLQSPFQ_					0	0	0		GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	GREB1|p.K311Nfs*65|1|0.16|ENSG00000196208|chr2:11585181-11585181|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	574.7726440429688	2	574.772188	1147.52982	-0.1048	-6.0236E-05	0.97324	0.00055939	0.86844	0.00049915	574.7727049161371	40.032	0.44596	40.032	39.908	40.354	0					49	18	4	0	0	0	0.19952	1	15238	15238		61.691	6.1871	1	917500			49398	11166	32547	32688	50029	50029					-0.03804035424786889
WDQNELQIR	9	Unmodified	_WDQNELQIR_					0	0	0			REV__ENST00000416904.4_1_12:53574496-53575518:+|nuORF	REV__ENST00000416904.4_1_12:53574496-53575518:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	401.20458984375	3	401.203522	1200.58874	3.1473	0.0012627	-0.70179	-0.00028156	2.4456	0.00098117	401.2033161649081	22.361	0.26724	22.361	22.254	22.521	0					11	5	3	0	0	0	0.51991	1	7436	7436		30.318	1.741	1	1577200	+		49399	19038	32548	32689	50030	50030					-0.003535591304398622
WDRGCVTVK	9	Unmodified	_WDRGCVTVK_					0	0	0			REV__ENST00000532611.1_1_11:67050652-67051295:+|nuORF	REV__ENST00000532611.1_1_11:67050652-67051295:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2727661132812	2	532.271301	1062.52805	3.4099	0.001815	-0.62609	-0.00033325	2.7838	0.0014817	532.2709956681362	15.873	0.36819	15.873	15.763	16.131	0					16	7	3	0	0	0	0.07136	1	4289	4289		87.696	10.85	1	3986000	+		49400	20072	32549	32690	50031	50031					-0.0007136771434943512
WDSAARSGS	9	Unmodified	_WDSAARSGS_					0	0	0			REV__ENST00000519313.5_1_5:150138178-150138235:-|nuORF	REV__ENST00000519313.5_1_5:150138178-150138235:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7139587402344	2	468.712131	935.409708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.945	1	43.945	43.445	44.445	0								0	0	0	0.23445	1	17607	17607		45.972	7.1661	1		+		49401	19935	32550	32691	50032	50032					-0.06058023698517445
WDVAGSNSL	9	Unmodified	_WDVAGSNSL_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.7239685058594	2	474.724707	947.43486	-0.60269	-0.00028611	0.0087028	4.1314E-06	-0.59398	-0.00028198	474.7247570048432	29.507	0.35688	29.507	29.358	29.715	0					19	7	4	0	0	0	0.098791	1	10808	10808		79.713	10.926	1	842680	+		49402	13703	32551	32692	50033	50033					-0.04095968895956048
WEAALRSL	8	Unmodified	_WEAALRSL_					0	0	0		ANPEP|p.S700R|1|0.35|ENSG00000166825|chr15:89797634-89797634|T/G|missense_variant	ANPEP|p.S700R|1|0.35|ENSG00000166825|chr15:89797634-89797634|T/G|missense_variant	ANPEP|p.S700R|1|0.35|ENSG00000166825|chr15:89797634-89797634|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	473.2578430175781	2	473.261259	944.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.529	1	38.529	38.029	39.029	0								0	0	0	1.7419	1	13782	13782		34.173	2.6427	1				49403	169	32552	32693	50034	50034					0.033492046173250856
WEDSAEKEVFK	11	Unmodified	_WEDSAEKEVFK_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	684.3265991210938	2	684.327524	1366.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.879	1	32.879	32.379	33.379	0								0	0	0	0.45144	1	10658	10658		25.574	0	1				49404	11616	32553	32694	50035	50035					-0.028158602272242206
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000232150|Q8IZP2|ST13P4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7167663574219	2	485.716882	969.41921	0.35632	0.00017307	-0.78766	-0.00038258	-0.43134	-0.00020951	485.71663134118074	31.77	0.14224	31.77	31.668	31.811	0					5	3	2	0	0	0	0.3961	1	11604	11604		71.296	30.518	1	64214			49405	2017	32554	32695	50036	50036					-0.06672255413013772
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000232150|Q8IZP2|ST13P4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	485.7167053222656	2	485.716882	969.41921	0.66907	0.00032498	-0.91903	-0.00044639	-0.24996	-0.00012141	485.7164238385588	31.769	0.37686	31.769	31.654	32.031	0					16	9	2	0	0	0	0.24915	1	11595	11595		102.77	44.962	1	399440			49406	2017	32554	32695	50037	50037					-0.06672255413013772
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000232150|Q8IZP2|ST13P4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	485.717529296875	2	485.716882	969.41921	3.4934	0.0016968	-3.4842	-0.0016923	0.0091777	4.4578E-06	485.71495366272006	31.554	0.16748	31.554	31.506	31.674	0					9	6	2	0	0	0	0.5676	1	10466	10466		53.351	3.9099	1	52558			49407	2017	32554	32695	50038	50038					-0.06672255413013772
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000232150|Q8IZP2|ST13P4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.71649169921875	2	485.716882	969.41921	-0.089368	-4.3407E-05	-0.15124	-7.346E-05	-0.24061	-0.00011687	485.7166718353783	31.771	0.34716	31.771	31.668	32.015	0					14	7	3	0	0	0	0.28427	1	12023	12023		87.754	43.638	1	389600			49408	2017	32554	32695	50039	50039					-0.06672255413013772
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000232150|Q8IZP2|ST13P4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.71612548828125	2	485.716882	969.41921	0.35297	0.00017144	-1.3454	-0.00065349	-0.99245	-0.00048205	485.7163794167	31.574	0.095648	31.574	31.487	31.582	0					4	2	2	0	0	0	0.46905	1	10879	10879		63.306	13.865	1	60723			49409	2017	32554	32695	50040	50040					-0.06672255413013772
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000232150|Q8IZP2|ST13P4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.71673583984375	2	485.716882	969.41921	-0.56167	-0.00027281	0.16506	8.0172E-05	-0.39661	-0.00019264	485.7169843668515	31.726	0.3174	31.726	31.617	31.935	0					14	6	3	0	0	0	0.3961	1	11901	11901		71.296	19.96	1	628120			49410	2017	32554	32695	50041	50041					-0.06672255413013772
WEICLSIV	8	Unmodified	_WEICLSIV_					0	0	0		ENSG00000173372|ENST00000374642|C1QA	ENSG00000173372|ENST00000374642|C1QA	ENSG00000173372|ENST00000374642|C1QA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.2603759765625	2	481.754421	961.494289	-0.62298	-0.00030012	-2.9706	-0.0014311	-3.5936	-0.0017312	481.7526617896878	28.316	0.31467	28.316	28.211	28.526	0					15	6	3	0	0	0	0.7126	1	10212	10212		31.955	1.6371	1	716290			49411	6425	32555	32696	50042	50042					0.012002107938769768
WEISQKTVL	9	Unmodified	_WEISQKTVL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.3090209960938	2	552.308406	1102.60226	0.60682	0.00033515	-0.087009	-4.8056E-05	0.51982	0.0002871	552.3083584265821	41.488	0.15573	41.488	41.405	41.561	0					15	7	3	0	0	0	0.36135	1	15748	15748		45.022	0.49114	1	224600			49412	5985	32556	32697	50043	50043					0.05506298648788288
WEISQKTVL	9	Unmodified	_WEISQKTVL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.3085327148438	2	552.308406	1102.60226	1.603	0.00088533	-1.3962	-0.00077111	0.20681	0.00011422	552.3077754378775	41.417	0.20568	41.417	41.336	41.542	0					19	8	3	0	0	0	0.30841	1	16278	16278		49.536	8.1094	1	219000			49413	5985	32556	32697	50044	50044					0.05506298648788288
WELEGPQVP	9	Unmodified	_WELEGPQVP_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7652587890625	2	527.763832	1053.51311	1.2603	0.00066512	2.2151	0.001169	3.4754	0.0018342	527.7646801032886	36.043	0.17109	36.043	35.981	36.152	0					10	7	2	0	0	0	0.43426	1	11822	11822		38.806	8.4884	1	50290			49414	6466	32557	32698	50045	50045					-0.011505363107289668
WELGDAEDP	9	Unmodified	_WELGDAEDP_					0	0	0		ENST00000506165.1_1_5:139943324-139943944:-|nuORF;nc|ENSG00000113108|O95704-5|APBB3;nc|ENSG00000113108|O95704-6|APBB3;nc|ENSG00000113108|O95704-2|APBB3;ENSG00000113108|ENST00000357560|APBB3;nc|ENSG00000113108|O95704-3|APBB3;nc|ENSG00000113108|O95704-4|APBB3	ENST00000506165.1_1_5:139943324-139943944:-|nuORF	ENST00000506165.1_1_5:139943324-139943944:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7230834960938	2	516.219454	1030.42436	1.2391	0.00063964	2.3778	0.0012275	3.6169	0.0018671	516.2212611005435	35.99	0.93594	35.99	35.672	36.608	0					31	20	3	0	0	0	0.26904	1	13713	13713		53.351	2.016	1	365160			49415	2778	32558	32699	50046	50046					-0.08963996341049096
WENEIAIK	8	Unmodified	_WENEIAIK_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.7659606933594	2	501.766374	1001.5182	0.70153	0.00035201	0.51976	0.0002608	1.2213	0.0006128	502.2680317278283	39.171	0.31237	39.171	39.066	39.378	0					22	11	4	0	0	0	0.42778	1	14883	14883		67.494	0	1	140400	+		49416	16808	32559	32700	50047	50047					0.017497675518939104
WEPSSQPTI	9	Unmodified	_WEPSSQPTI_					0	0	0		ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENSG00000204525|ENST00000376228|HLA-C;ENST00000463348.5_1_6:30229165-30231201:+|nuORF;ENST00000482052.5_1_6:30229165-30260340:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENST00000487245.5_1_6:31236948-31239147:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7536010742188	2	522.753464	1043.49238	1.6254	0.00084966	-1.6836	-0.00088012	-0.058269	-3.046E-05	522.7527868084246	39.924	0.53305	39.924	39.734	40.268	0					25	12	3	0	0	0	0.15163	1	15781	15781		67.494	8.7117	1	296220			49417	7707	32560	32701	50048	50048					-0.027631266903881624
WEQAFQMAES	10	Unmodified	_WEQAFQMAES_					0	0	0		MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|10|1|anti-sense	MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|10|1|anti-sense	MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|10|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	613.7611083984375	2	613.760963	1225.50737	-0.92788	-0.00056949	1.1284	0.00069259	0.20056	0.0001231	613.7617029268476	37.289	0.73307	37.289	36.625	37.358	0					35	20	2	0	0	0	0.49411	1	14148	14148		45.972	5.9141	1	241920			49418	11380	32561	32702	50049	50049					-0.0963600288471298
WERNQNLI	8	Unmodified	_WERNQNLI_					0	0	0		SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	536.7811279296875	2	536.780348	1071.54614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.337	1	34.337	33.837	34.837	0								0	0	0	1.7419	1	12145	12145		51.335	3.3759	1				49419	1874	32562	32703	50050	50050					0.01323090531991511
WERVSHLK	8	Unmodified	_WERVSHLK_					0	0	0		ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7928466796875	2	527.793258	1053.57196	-1.191	-0.00062859	0.54994	0.00029026	-0.64104	-0.00033834	527.7935008773713	30.286	0.29757	30.286	30.133	30.431	0					17	7	3	0	0	0	0.44433	1	10281	10281		65.803	0	1	888030			49420	6056	32563	32704	50051	50051					0.04731984774275588
WESIIVDV	8	Unmodified	_WESIIVDV_					0	0	0			REV__nc|ENSG00000185238|O60678-2|PRMT3	REV__nc|ENSG00000185238|O60678-2|PRMT3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.75274658203125	2	480.755475	959.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.722	1	40.722	40.222	41.222	0								0	0	0	1.7419	1	13611	13611		38.806	0.052534	1		+		49421	17013	32564	32705	50052	50052					0.015029628033403242
WETQAKQF	8	Unmodified	_WETQAKQF_					0	0	0			REV__ENST00000472442.2_1_19:1922970-1924280:+|nuORF	REV__ENST00000472442.2_1_19:1922970-1924280:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2548828125	2	519.256174	1036.49779	1.1267	0.00058507	-0.12215	-6.343E-05	1.0046	0.00052164	519.2560694452457	36.653	0.66968	36.653	36.509	37.178	0					49	20	3	0	0	0	0.58597	1	14515	14515		51.335	14.176	1	384860	+		49422	17636	32565	32706	50053	50053					-0.018994031079273554
WEVGFSRA	8	Unmodified	_WEVGFSRA_					0	0	0			REV__ENSG00000117091|ENST00000368046|CD48	REV__ENSG00000117091|ENST00000368046|CD48	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.2375793457031	2	476.237784	950.461016	-0.11879	-5.6575E-05	-0.56236	-0.00026782	-0.68115	-0.00032439	476.2373928846458	36.907	0.59354	36.907	36.809	37.403	0					37	18	3	0	0	0	0.65276	1	14414	14414		40.573	1.7665	1	540470	+		49423	14177	32566	32707	50054	50054					-0.01619654933813308
WEVYVCSQHSP	11	Unmodified	_WEVYVCSQHSP_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	667.7943115234375	2	667.795337	1333.57612	0.24374	0.00016277	-0.93257	-0.00062277	-0.68883	-0.00046	667.7942809087784	22.163	0.093903	22.163	22.12	22.214	0					5	3	2	0	0	0	0.69524	1	6229	6229		28.081	2.5074	1	77196			49424	2718	32567	32708	50055	50055					-0.07732338584969511
WFALLQNL	8	Unmodified	_WFALLQNL_					0	0	0		RASGRF1|p.L299Yfs*9|1|0.19|ENSG00000058335|chr15:79035193-79035193|A/-|frameshift_variant;ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1	RASGRF1|p.L299Yfs*9|1|0.19|ENSG00000058335|chr15:79035193-79035193|A/-|frameshift_variant	RASGRF1|p.L299Yfs*9|1|0.19|ENSG00000058335|chr15:79035193-79035193|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.78192138671875	2	502.781828	1003.5491	3.5659	0.0017929	-3.2993	-0.0016588	0.26667	0.00013408	502.78026804504987	32.606	0.15218	32.606	32.495	32.648	0					9	6	2	0	0	0	0.527	1	10890	10890		57.453	4.1012	1	48107			49425	1302	32568	32709	50056	50056					0.04746965656784141
WFALLQNL	8	Unmodified	_WFALLQNL_					0	0	0		RASGRF1|p.L299Yfs*9|1|0.19|ENSG00000058335|chr15:79035193-79035193|A/-|frameshift_variant;ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1	RASGRF1|p.L299Yfs*9|1|0.19|ENSG00000058335|chr15:79035193-79035193|A/-|frameshift_variant	RASGRF1|p.L299Yfs*9|1|0.19|ENSG00000058335|chr15:79035193-79035193|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7815246582031	2	502.781828	1003.5491	-0.21421	-0.0001077	-1.7569	-0.00088335	-1.9711	-0.00099105	502.7813703365552	32.562	0.16579	32.562	32.484	32.65	0					9	5	2	0	0	0	0.4434	1	11326	11326		65.897	9.1764	1	141010			49426	1302	32568	32709	50057	50057					0.04746965656784141
WFFHLGAHL	9	Unmodified	_WFFHLGAHL_					0	0	0			REV__ENST00000304858.6_1_5:132388040-132400692:+|nuORF	REV__ENST00000304858.6_1_5:132388040-132400692:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.29052734375	2	564.292894	1126.57123	-1.07	-0.00060381	-1.7573	-0.00099161	-2.8273	-0.0015954	564.2918120628382	38.867	0.21373	38.867	38.77	38.984	0					23	11	3	0	0	0	0.43174	1	13873	13873		39.021	0.21535	1	232420	+		49427	18231	32569	32710	50058	50058					0.013011901252184543
WFFPIIGHM	9	Unmodified	_WFFPIIGHM_					0	0	0		ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.291015625	2	574.291505	1146.56846	-0.16224	-9.3173E-05	-0.87107	-0.00050025	-1.0333	-0.00059342	574.2908679388828	12.708	0.095306	12.708	12.659	12.754	0					4	2	2	0	0	0	0.52436	1	2932	2932		29.842	5.3224	1	99138			49428	7143	32570	32711	50059	50059					0.0010359867605984618
WFFTNSRY	8	Unmodified	_WFFTNSRY_					0	0	0			REV__ENST00000492580.1_1_17:67008011-67013901:-|nuORF	REV__ENST00000492580.1_1_17:67008011-67013901:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7666625976562	2	560.764166	1119.51378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.58	1	48.58	48.08	49.08	0								0	0	0	1.7419	1	19294	19294		42.396	5.237	1		+		49429	12031	32571	32712	50060	50060					-0.041196968709982684
WFGYLHIE	8	Unmodified	_WFGYLHIE_					0	0	0			REV__ST8SIA4|p.F303Lfs*8|1|0.06|ENSG00000113532|chr5:100812021-100812022|-/TGTGTAAA|frameshift_variant;REV__ENSG00000177511|ENST00000324000|ST8SIA3	REV__ST8SIA4|p.F303Lfs*8|1|0.06|ENSG00000113532|chr5:100812021-100812022|-/TGTGTAAA|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7644653320312	2	532.763635	1063.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.582	1	19.582	19.082	20.082	0								0	0	0	1.7419	1	6215	6215		44.531	5.5096	1		+		49430	14044;16697	32572	32713	50061	50061					-0.01649911239883295
WFHLNNQML	9	Unmodified	_WFHLNNQML_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	601.7905883789062	2	601.792401	1201.57025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.483	1	38.483	37.983	38.983	0								0	0	0	0.35507	1	15099	15099		24.203	4.206	1				49431	9019	32573	32714	50062	50062					-0.02247392305980611
WFLDPSTL	8	Unmodified	_WFLDPSTL_					0	0	0			REV__LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant	REV__LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7493896484375	2	489.750193	977.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.377	1	25.377	24.877	25.877	0								0	0	0	1.7419	1	7631	7631		40.573	1.7665	1		+		49432	14594	32574	32715	50063	50063					-0.0038101985109051384
WFLVEKHWYKQ	11	Unmodified	_WFLVEKHWYKQ_					0	0	0		USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant;USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant	USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.9437866210938	3	521.94175	1562.80342	2.1711	0.0011332	1.8154	0.00094751	3.9865	0.0020807	521.9427956964013	27.188	0.064753	27.188	27.136	27.201	0					6	2	3	0	0	0	0.82318	1	8349	8349		10.104	3.783	1	62303			49433	2160	32575	32716	50064	50064					0.044529876853175665
WFMLGQTK	8	Oxidation (M)	_WFM(Oxidation (M))LGQTK_		WFM(1)LGQTK		WFM(99)LGQTK	0	0	1			REV__ENST00000428729.1_1_6:3045620-3046031:+|nuORF	REV__ENST00000428729.1_1_6:3045620-3046031:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.7589111328125	2	513.757495	1025.50044	3.1874	0.0016375	-0.65769	-0.00033789	2.5297	0.0012996	513.7571542979833	24.405	0.65776	24.405	24.196	24.854	0					42	13	7	0	0	0	0.25102	1	8399	8399		99.375	28.079	1	17112000	+		49434	19138	32576	32717	50065	50065		703			-0.011292709745930551
WFPAAINLV	9	Unmodified	_WFPAAINLV_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1;TENM1|p.L1382Ffs*3|1|0.63|ENSG00000009694|chrX:124422576-124422577|-/A|frameshift_variant;TENM1|p.M1863Wfs*25|1|0.38|ENSG00000009694|chrX:124392132-124392132|T/-|frameshift_variant;TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.792236328125	2	515.789653	1029.56475	3.2627	0.0016828	-0.49327	-0.00025442	2.7694	0.0014284	515.7892382472583	39.755	0.3691	39.755	39.543	39.912	0					16	8	3	0	0	0	0.23186	1	15736	15736		57.811	4.8746	1	246050			49435	1026	32577	32718	50066	50066					0.05115252173823137
WFPDMIRY	8	Unmodified	_WFPDMIRY_					0	0	0		nc|ENSG00000185518|Q7L1I2-2|SV2B;SV2B|p.G586Wfs*4|2|0.27|ENSG00000185518|chr15:91289561-91289562|-/T|frameshift_variant;ENSG00000185518|ENST00000394232|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.2718505859375	2	564.27077	1126.52699	0.13287	7.4973E-05	1.2413	0.00070042	1.3741	0.00077539	564.2715767329857	18.845	0.38963	18.845	18.627	19.017	0					12	8	2	0	0	0	0.78142	1	5876	5876		23.042	0	1	257640			49436	7085	32578	32719	50067	50067					-0.031215820832812824
WFTTSRPQPPP	11	Unmodified	_WFTTSRPQPPP_					0	0	0			REV__nc|ENSG00000211898|P01880-1|IGHD	REV__nc|ENSG00000211898|P01880-1|IGHD	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	657.332275390625	2	657.335487	1312.65642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.083	1	31.083	30.583	31.583	0								0	0	0	0.45344	1	10270	10270		25.126	2.5463	1		+		49437	21204	32579	32720	50068	50068					0.012598908003838005
WFWILWRFWH	10	Unmodified	_WFWILWRFWH_					0	0	0		ENSG00000090266|ENST00000247866|NDUFB2	ENSG00000090266|ENST00000247866|NDUFB2	ENSG00000090266|ENST00000247866|NDUFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	789.400390625	2	788.903674	1575.7928	-3.7938	-0.0029929	-2.5956	-0.0020477	-6.3893	-0.0050406	789.4033895113179	11.77	0.056046	11.77	11.735	11.791	0					4	2	2	0	0	0	0.79422	1	2340	2340		1.0954	1.0954	1	79799			49438	1830	32580	32721	50069	50069					0.027930498215255284
WFYGIFWT	8	Unmodified	_WFYGIFWT_					0	0	0			REV__POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant	REV__POLR2B|p.A362Pfs*21|1|0.34|ENSG00000047315|chr4:57005423-57005423|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.2694091796875	2	560.268553	1118.52255	-0.44043	-0.00024676	1.0875	0.00060928	0.64705	0.00036252	560.7700111583102	30.306	0.17936	30.306	30.236	30.415	0					7	5	2	0	0	0	0.67475	1	9944	9944		37.028	10.965	1	68888	+		49439	21396	32581	32722	50070	50070					-0.03196723234509591
WGAALRSSL	9	Unmodified	_WGAALRSSL_					0	0	0		ENSG00000166987|ENST00000355673|MBD6;MBD6|p.R878Pfs*26|1|0.34|ENSG00000166987|chr12:57528369-57528406|GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT/-|frameshift_variant;MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant;MBD6|p.G877Afs*69|1|0.53|ENSG00000166987|chr12:57528367-57528367|G/-|frameshift_variant;MBD6|p.F318Sfs*59|1|0.21|ENSG00000166987|chr12:57525914-57525914|C/-|frameshift_variant;MBD6|p.P478Hfs*9|1|0.21|ENSG00000166987|chr12:57526575-57526575|C/-|frameshift_variant;MBD6|p.P443Qfs*44|1|0.22|ENSG00000166987|chr12:57526292-57526292|C/-|frameshift_variant;MBD6|p.P671Lfs*4|2|0.31|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant;MBD6|p.P666Hfs*9|1|0.26|ENSG00000166987|chr12:57527137-57527137|C/-|frameshift_variant;MBD6|p.Q694Sfs*5|7|0.43|ENSG00000166987|chr12:57527219-57527219|C/-|frameshift_variant;MBD6|p.T672Yfs*45|1|0.54|ENSG00000166987|chr12:57527150-57527151|-/C|frameshift_variant;MBD6|p.Q734Nfs*18|4|0.41|ENSG00000166987|chr12:57527618-57527618|C/-|frameshift_variant;MBD6|p.P239L|1|0.13|ENSG00000166987|chr12:57525684-57525684|C/T|missense_variant	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	480.76873779296875	2	480.766709	959.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.141	1	27.141	26.641	27.641	0								0	0	0	0.17378	1	8333	8333		54.776	3.4409	1				49440	5959	32582	32723	50071	50071					0.03748606991609904
WGAGALAAV	9	Unmodified	_WGAGALAAV_					0	0	0			REV__ENST00000550078.2_2_1:203764956-203765340:+|nuORF	REV__ENST00000550078.2_2_1:203764956-203765340:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	408.2220764160156	2	408.224146	814.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.863	1	19.863	19.363	20.363	0								0	0	0	0.21213	1	5453	5453		49.211	2.4444	1		+		49441	20189	32583	32724	50072	50072					0.019098615257917118
WGAGISVLV	9	Unmodified	_WGAGISVLV_					0	0	0			REV__ENST00000262811.10_1_19:18260667-18260754:+|nuORF	REV__ENST00000262811.10_1_19:18260667-18260754:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.2593078613281	2	451.260728	900.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.495	1	28.495	27.995	28.995	0								0	0	0	0.29985	1	9466	9466		35.201	6.0512	1		+		49442	18035	32584	32725	50073	50073					0.05266990248435377
WGAMWLTI	8	Unmodified	_WGAMWLTI_					0	0	0			REV__MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant	REV__MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	489.2483215332031	2	489.249306	976.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.263	1	26.263	25.763	26.763	0								0	0	0	1.7419	1	8237	8237		33.516	0.022601	1		+		49443	13361	32585	32726	50074	50074					-0.005123521406972031
WGCLGHPQL	9	Unmodified	_WGCLGHPQL_					0	0	0			REV__ENST00000473879.1_1_7:2578318-2580643:-|nuORF	REV__ENST00000473879.1_1_7:2578318-2580643:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7470397949219	2	505.747462	1009.48037	-0.045871	-2.3199E-05	-0.27759	-0.00014039	-0.32347	-0.00016359	505.7477934464675	29.928	0.17132	29.928	29.839	30.011	0					10	4	3	0	0	0	0.39123	1	10748	10748		42.474	0	1	252380	+		49444	19510	32586	32727	50075	50075					-0.02399021914561672
WGCSWRSY	8	Unmodified	_WGCSWRSY_					0	0	0		ENST00000280083.7_2_14:39736586-39746165:+|nuORF	ENST00000280083.7_2_14:39736586-39746165:+|nuORF	ENST00000280083.7_2_14:39736586-39746165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7225341796875	2	522.721444	1043.42834	1.7976	0.00093966	0.56024	0.00029285	2.3579	0.0012325	522.7218310518635	30.555	0.24509	30.555	30.496	30.742	0					14	5	4	0	0	0	0.52345	1	11448	11448		57.811	2.3071	1	648690			49445	8407	32587	32728	50076	50076					-0.09164185328313579
WGCSWRSY	8	Unmodified	_WGCSWRSY_					0	0	0		ENST00000280083.7_2_14:39736586-39746165:+|nuORF	ENST00000280083.7_2_14:39736586-39746165:+|nuORF	ENST00000280083.7_2_14:39736586-39746165:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7232666015625	2	522.721444	1043.42834	1.0866	0.000568	1.9533	0.001021	3.0399	0.001589	522.7223768288685	30.344	0.22894	30.344	30.251	30.48	0					8	5	2	0	0	0	0.60719	1	10310	10310		47.916	9.1095	1	144480			49446	8407	32587	32728	50077	50077					-0.09164185328313579
WGEGEVDDEE	10	Unmodified	_WGEGEVDDEE_					0	0	0		ARL6IP6|p.E44D|1|0.18|ENSG00000177917|chr2:152718756-152718756|G/C|missense_variant	ARL6IP6|p.E44D|1|0.18|ENSG00000177917|chr2:152718756-152718756|G/C|missense_variant	ARL6IP6|p.E44D|1|0.18|ENSG00000177917|chr2:152718756-152718756|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.7201538085938	2	582.720015	1163.42548	-0.0052159	-3.0394E-06	-0.80031	-0.00046636	-0.80552	-0.00046939	582.7196917609307	12.381	0.32722	12.381	12.175	12.502	0					23	11	3	0	0	0	0.73697	1	2575	2575		15.642	0	1	254930			49447	223	32588	32729	50078	50078					-0.14969826762785488
WGEIIKLPI	9	Unmodified	_WGEIIKLPI_					0	0	0		DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;DOCK3|p.P1852Sfs*46|1|0.25|ENSG00000088538|chr3:51380173-51380174|CC/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.18896484375	3	356.886582	1067.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.897	1	21.897	21.397	22.397	0								0	0	0	0.15865	1	7028	7028		54.776	0	1				49448	837	32589	32730	50079	50079					0.10680380896474162
WGEIPKIERA	10	Unmodified	_WGEIPKIERA_					0	0	0		ENSG00000070018|ENST00000261349|LRP6;LRP6|p.F536Rfs*10|1|0.06|ENSG00000070018|chr12:12165235-12165236|-/GCTTTCT|frameshift_variant	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	599.8306274414062	2	599.83258	1197.65061	-0.57407	-0.00034435	-2.8643	-0.0017181	-3.4384	-0.0020625	599.8308519287528	27.608	0.1276	27.608	27.555	27.682	0					6	4	2	0	0	0	0.4947	1	8829	8829		27.047	0	1	55847			49449	1441	32590	32731	50080	50080					0.05968792288695113
WGELNKQI	8	Unmodified	_WGELNKQI_					0	0	0			REV__SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	REV__SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	494.2647705078125	2	494.266542	986.51853	0.045476	2.2477E-05	-3.8479	-0.0019019	-3.8024	-0.0018794	494.26437522946014	23.127	0.13979	23.127	23.033	23.173	0					5	3	2	0	0	0	0.59411	1	7017	7017		50.025	2.065	1	97391	+		49450	16577	32591	32732	50081	50081					0.024731872717552505
WGFKFGVA	8	Unmodified	_WGFKFGVA_					0	0	0		ENST00000263620.3_19:974543-975197:+|nuORF	ENST00000263620.3_19:974543-975197:+|nuORF	ENST00000263620.3_19:974543-975197:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.24188232421875	2	456.242338	910.470124	-1.1171	-0.00050967	0.35676	0.00016277	-0.76034	-0.0003469	456.2424630385345	28.626	0.76727	28.626	28.251	29.018	0					51	28	2	0	0	0	0.66238	1	9267	9267		39.021	5.5285	1	155100			49451	8319	32592	32733	50082	50082					0.011307384225233363
WGGMLRALF	9	Unmodified	_WGGMLRALF_					0	0	0			REV__OSCP1|p.M306Wfs*15|1|0.33|ENSG00000116885|chr1:36420550-36420550|C/-|frameshift_variant	REV__OSCP1|p.M306Wfs*15|1|0.33|ENSG00000116885|chr1:36420550-36420550|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.7824096679688	2	525.781305	1049.54806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.485	1	39.485	38.985	39.985	0								0	0	0	0.27166	1	13269	13269		40.573	7.057	1		+		49452	21329	32593	32734	50083	50083					0.02526428016221871
WGHFARRHS	9	Unmodified	_WGHFARRHS_					0	0	0			REV__nc|ENSG00000017260|P98194-4|ATP2C1	REV__nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.293701171875	2	577.291748	1152.56894	3.2805	0.0018938	0.067227	3.881E-05	3.3477	0.0019326	577.2917982581907	10.664	0.0425	10.664	10.644	10.686	0					4	2	2	0	0	0	0.60058	1	2041	2041		27.882	6.9353	1	82382	+		49453	12928	32594	32735	50084	50084					-0.0012384555986955093
WGKFLVSI	8	Unmodified	_WGKFLVSI_					0	0	0		BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.27618408203125	2	475.278921	948.543289	-2.671	-0.0012695	-1.6136	-0.00076692	-4.2846	-0.0020364	475.2781202182915	37.475	0.23088	37.475	37.402	37.632	0					18	11	2	0	0	0	0.59773	1	13403	13403		49.442	6.9671	1	95205			49454	303	32595	32736	50085	50085					0.06695867145140255
WGKGIKCLK	9	Unmodified	_WGKGIKCLK_					0	0	0		ENST00000461864.5_1_3:136561040-136561193:-|nuORF	ENST00000461864.5_1_3:136561040-136561193:-|nuORF	ENST00000461864.5_1_3:136561040-136561193:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.8065185546875	2	516.80478	1031.59501	0.82963	0.00042875	2.5828	0.0013348	3.4124	0.0017635	516.8066050116597	24.867	0.14945	24.867	24.771	24.92	0					6	3	2	0	0	0	0.22837	1	7831	7831		51.335	0	1	164250			49455	9737	32596	32737	50086	50086					0.08047287567364947
WGLAGLALL	9	Unmodified	_WGLAGLALL_					0	0	0			REV__nc|ENSG00000223802|P27544-2|CERS1	REV__nc|ENSG00000223802|P27544-2|CERS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2763671875	2	457.278921	912.543289	-2.6413	-0.0012078	-1.0764	-0.00049223	-3.7177	-0.0017	457.2782515548148	38.865	0.19637	38.865	38.77	38.967	0					16	10	2	0	0	0	0.52436	1	13883	13883		29.842	0	1	65573	+		49456	17620	32597	32738	50087	50087					0.08351867145142933
WGLPVFGP	8	Unmodified	_WGLPVFGP_					0	0	0			REV__ZDHHC6|p.G79S|1|0.06|ENSG00000023041|chr10:112445202-112445202|C/T|missense_variant	REV__ZDHHC6|p.G79S|1|0.06|ENSG00000023041|chr10:112445202-112445202|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	437.23724365234375	2	436.736889	871.459225	-3.0618	-0.0013372	1.2847	0.00056107	-1.7771	-0.00077613	436.7377588735136	20.156	0.40439	20.156	19.906	20.31	0					19	9	3	0	0	0	0.77013	1	5570	5570		24.504	0	1	231820	+		49457	12944	32598	32739	50088	50088					0.018353360482365133
WGLSHPLR	8	Unmodified	_WGLSHPLR_					0	0	0		RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.27294921875	2	483.269419	964.524284	0.057353	2.7717E-05	-1.2757	-0.00061652	-1.2184	-0.0005888	483.2690589759836	40.207	0.41101	40.207	40.011	40.422	0					45	24	3	0	0	0	0.77246	1	12967	12967		24.203	0	1	362360			49458	22357	32599	32740	50089	50089					0.040603305740773976
WGLSSEHGLRN	11	Unmodified	_WGLSSEHGLRN_					0	0	0			REV__ENST00000305123.5_1_2:227661928-227662057:-|nuORF	REV__ENST00000305123.5_1_2:227661928-227662057:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	628.8119506835938	2	628.312543	1254.61053	1.3245	0.00083223	-3.5393	-0.0022238	-2.2147	-0.0013915	628.8118330850616	42.634	0.066257	42.634	42.606	42.672	0					5	3	2	0	0	0	0.65378	1	16142	16142		22.58	0	1	61910	+		49459	18235	32600	32741	50090	50090					-0.00658754381856852
WGLTRSGAR	9	Unmodified	_WGLTRSGAR_					0	0	0			REV__ENST00000468248.5_1_20:34205613-34205661:+|nuORF	REV__ENST00000468248.5_1_20:34205613-34205661:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.2748718261719	2	502.275232	1002.53591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.175	1	20.175	19.675	20.675	0								0	0	0	0.14961	1	5623	5623		62.107	9.0185	1		+		49460	19438	32601	32742	50091	50091					0.03474527597427368
WGLVVQCVA	9	Unmodified	_WGLVVQCVA_					0	0	0		ENST00000327827.11_1_16:9212523-9212682:+|nuORF	ENST00000327827.11_1_16:9212523-9212682:+|nuORF	ENST00000327827.11_1_16:9212523-9212682:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.76104736328125	2	487.760038	973.505523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.72	1	25.72	25.22	26.22	0								0	0	0	0.11313	1	7769	7769		68.485	4.9508	1				49461	8658	32602	32743	50092	50092					0.017710328880070847
WGLVVQCVA	9	Unmodified	_WGLVVQCVA_					0	0	0		ENST00000327827.11_1_16:9212523-9212682:+|nuORF	ENST00000327827.11_1_16:9212523-9212682:+|nuORF	ENST00000327827.11_1_16:9212523-9212682:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	487.7611389160156	2	487.760038	973.505523	2.5695	0.0012533	-0.28108	-0.0001371	2.2884	0.0011162	487.75990489367194	25.975	0.16833	25.975	25.866	26.034	0					9	3	3	0	0	0	0.068692	1	9109	9109		88.643	13.6	1	2660800			49462	8658	32602	32743	50093	50093					0.017710328880070847
WGPSRRCRSRR	11	Unmodified	_WGPSRRCRSRR_					0	0	0			REV__ENST00000341184.6_1_22:39853353-39853542:+|nuORF	REV__ENST00000341184.6_1_22:39853353-39853542:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	709.3773803710938	2	708.878727	1415.7429	-1.6556	-0.0011736	0.6983	0.00049501	-0.95728	-0.00067859	708.8791120264261	33.546	0.43006	33.546	33.283	33.713	0					27	10	4	0	0	0	0.72685	1	12781	12781		16.007	0	1	472170	+		49463	18450	32603	32744	50094	50094					0.05165991873946041
WGQAWCLALV	10	Unmodified	_WGQAWCLALV_					0	0	0		ENST00000426508.6_2_16:1642283-1652410:-|nuORF	ENST00000426508.6_2_16:1642283-1652410:-|nuORF	ENST00000426508.6_2_16:1642283-1652410:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	573.7907104492188	2	573.791869	1145.56919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.16	1	17.16	16.66	17.66	0								0	0	0	0.4201	1	4222	4222		19.36	2.6426	1				49464	9447	32604	32745	50095	50095					0.0022239332508888765
WGQEVQEA	8	Unmodified	_WGQEVQEA_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.718505859375	2	473.716882	945.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.743	1	35.743	35.243	36.243	0								0	0	0	1.7419	1	13427	13427		40.778	1.972	1		+		49465	14839	32605	32746	50096	50096					-0.055682554129930395
WGQHHVSVGGL	11	Unmodified	_WGQHHVSVGGL_					0	0	0		ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	392.8683166503906	3	392.868473	1175.58359	-0.66795	-0.00026242	0.31034	0.00012192	-0.35761	-0.00014049	392.86859324448875	17.098	1.9739	17.098	16.94	18.914	0					81	40	5	0	0	0	0.78029	1	5214	5214		19.263	19.263	1	8210900			49466	2705	32606	32747	50097	50097					0.00282181797638259
WGQPFPLPSA	10	Unmodified	_WGQPFPLPSA_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	550.2811889648438	2	550.282192	1098.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.329	1	40.329	39.829	40.829	0								0	0	0	0.41253	1	15370	15370		26.693	0	1		+		49467	21238	32607	32748	50098	50098					0.004497603058553068
WGRGCVLV	8	Unmodified	_WGRGCVLV_					0	0	0			REV__ENST00000436622.1_1_2:24345702-24346289:-|nuORF	REV__ENST00000436622.1_1_2:24345702-24346289:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	445.23974609375	2	445.239273	888.463992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.331	1	25.331	24.831	25.831	0								0	0	0	1.7419	1	7613	7613		37.028	2.8559	1		+		49468	18281	32608	32749	50099	50099					0.015298969193622725
WGRGRLGAQ	9	Unmodified	_WGRGRLGAQ_					0	0	0		ENST00000322652.9_1_17:30264237-30264510:+|nuORF	ENST00000322652.9_1_17:30264237-30264510:+|nuORF	ENST00000322652.9_1_17:30264237-30264510:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	501.27490234375	2	500.7754	999.536246	-2.123	-0.0010632	0.89999	0.00045069	-1.2231	-0.00061248	500.7760092988603	15.52	0.28073	15.52	15.367	15.648	0					18	9	3	0	0	0	0.47038	1	3473	3473		35.618	3.6634	1	252500			49469	8628	32609	32750	50100	50100					0.03645947317284026
WGRRETKI	8	Unmodified	_WGRRETKI_					0	0	0			REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.2980346679688	2	523.298707	1044.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.218	1	26.218	25.718	26.718	0								0	0	0	1.7419	1	9357	9357		34.173	0.25091	1		+		49470	15353	32610	32751	50101	50101					0.06235387148558402
WGRRRGEY	8	Unmodified	_WGRRRGEY_					0	0	0			REV__ENST00000582788.5_1_17:37872360-37873734:+|nuORF	REV__ENST00000582788.5_1_17:37872360-37873734:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.2769165039062	2	540.278306	1078.54206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.797	1	22.797	22.297	23.297	0								0	0	0	1.7419	1	6501	6501		31.955	2.8053	1		+		49471	20464	32611	32752	50102	50102					0.005930458289412854
WGRWWFWLERR	11	Unmodified	_WGRWWFWLERR_					0	0	0			REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.955078125	3	559.956505	1676.84768	1.4318	0.00080177	-2.1618	-0.0012105	-0.72993	-0.00040873	559.9550483714949	36.12	0.30671	36.12	35.918	36.225	0					26	14	3	0	0	0	0.86838	1	11834	11834		3.2113	0	1	132480	+		49472	17945	32612	32753	50103	50103					0.036334366221353775
WGRWWFWLERR	11	Unmodified	_WGRWWFWLERR_					0	0	0			REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.9559326171875	3	559.956505	1676.84768	1.7957	0.0010055	-2.8554	-0.0015989	-1.0596	-0.00059333	559.9549479681237	36.377	0.33477	36.377	36.172	36.507	0					19	9	3	0	0	0	0.90296	1	13710	13710		0.37141	0.37141	1	136740	+		49473	17945	32612	32753	50104	50104					0.036334366221353775
WGRWWFWLERR	11	Unmodified	_WGRWWFWLERR_					0	0	0			REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.955322265625	3	559.956505	1676.84768	1.0556	0.00059107	-1.8726	-0.0010486	-0.81709	-0.00045753	559.9556313515602	36.156	0.46902	36.156	35.931	36.4	0					44	17	4	0	0	0	0.86597	1	12899	12899		3.4087	3.4087	1	246490	+		49474	17945	32612	32753	50105	50105					0.036334366221353775
WGRWWFWLERR	11	Unmodified	_WGRWWFWLERR_					0	0	0			REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	559.95556640625	3	559.956505	1676.84768	-0.84524	-0.0004733	-0.83636	-0.00046833	-1.6816	-0.00094162	559.9561701058352	35.823	0.70992	35.823	35.705	36.415	0					63	26	5	0	0	0	0.90749	1	12759	12759		0	0	1	454180	+		49475	17945	32612	32753	50106	50106					0.036334366221353775
WGRWWFWLERR	11	Unmodified	_WGRWWFWLERR_					0	0	0			REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.955810546875	3	559.956505	1676.84768	1.8252	0.001022	-2.4384	-0.0013654	-0.61321	-0.00034337	559.954734616134	36.273	0.46384	36.273	36.115	36.579	0					23	9	3	0	0	0	0.8438	1	14096	14096		5.6988	4.28	1	298080	+		49476	17945	32612	32753	50107	50107					0.036334366221353775
WGSAPAER	8	Unmodified	_WGSAPAER_					0	0	0			REV__ENSG00000137822|ENST00000564079|TUBGCP4	REV__ENSG00000137822|ENST00000564079|TUBGCP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	437.2141418457031	2	437.214309	872.414065	-0.27846	-0.00012175	-0.13059	-5.7097E-05	-0.40905	-0.00017884	437.2142419061164	22.125	0.1996	22.125	22.051	22.25	0					12	6	3	0	0	0	0.64144	1	6199	6199		42.396	3.59	1	744830	+		49477	14940	32613	32754	50108	50108					-0.027245144849530334
WGSIPVSPVT	10	Unmodified	_WGSIPVSPVT_					0	0	0			REV__EEF1A2|p.F190S|1|0.12|ENSG00000101210|chr20:63494857-63494857|A/G|missense_variant	REV__EEF1A2|p.F190S|1|0.12|ENSG00000101210|chr20:63494857-63494857|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.2841186523438	2	521.782025	1041.5495	0.36983	0.00019297	0.82878	0.00043244	1.1986	0.00062541	521.7823901491321	32.985	0.44922	32.985	32.767	33.216	0					41	17	3	0	0	0	0.48965	1	11039	11039		34.173	0	1	1374000	+		49478	12771	32614	32755	50109	50109					0.030383405859993218
WGSPCPPIQI	10	Unmodified	_WGSPCPPIQI_					0	0	0			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.2748413085938	2	549.276052	1096.53755	1.742	0.00095684	-1.9944	-0.0010955	-0.25239	-0.00013863	549.2748186311128	32.436	0.52831	32.436	32.274	32.802	0					24	13	2	0	0	0	0.41335	1	12305	12305		54.776	5.2403	1	510100	+		49479	17121	32615	32756	50110	50110					-0.006855994288343936
WGVCLVKL	8	Unmodified	_WGVCLVKL_					0	0	0			REV__ENST00000565062.5_1_16:90097706-90103159:+|nuORF	REV__ENST00000565062.5_1_16:90097706-90103159:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.267822265625	2	459.267499	916.520445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.352	1	33.352	32.852	33.852	0								0	0	0	1.7419	1	10836	10836		46.766	9.6073	1		+		49480	20331	32616	32757	50111	50111					0.058845247560270764
WGVYKALM	8	Unmodified	_WGVYKALM_					0	0	0			REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.2581787109375	2	484.257131	966.499709	-0.58514	-0.00028336	3.0226	0.0014637	2.4375	0.0011804	484.2585761392354	35.594	0.17013	35.594	35.484	35.654	0					6	3	2	0	0	0	0.61433	1	13764	13764		46.766	2.6496	1	305810	+		49481	22038	32617	32758	50112	50112					0.01511934376355839
WGWVPPGL	8	Unmodified	_WGWVPPGL_					0	0	0		ENST00000544718.1_1_12:132403795-132404230:+|nuORF	ENST00000544718.1_1_12:132403795-132404230:+|nuORF	ENST00000544718.1_1_12:132403795-132404230:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	456.2416076660156	2	456.242338	910.470124	-1.1171	-0.00050967	0.35676	0.00016277	-0.76034	-0.0003469	456.2424630385345	28.626	0.76727	28.626	28.251	29.018	0					51	28	2	0	0	0	0.77013	1	9120	9120		24.504	24.504	1	155100			49482	10568	32618	32759	50113	50113					0.011307384225233363
WHAPGPLY	8	Unmodified	_WHAPGPLY_					0	0	0			REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	REV__LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	471.808349609375	2	470.73742	939.460287	-0.86008	-0.00040487	0.87985	0.00041418	0.019776	9.3091E-06	470.7379012962542	21.395	0.21746	21.395	21.24	21.458	0					9	4	3	0	0	0	0.79462	1	7056	7056		16.705	1.0687	1	387040	+		49483	17202	32619	32760	50114	50114					-0.011864495828717736
WHFILELL	8	Unmodified	_WHFILELL_					0	0	0		ERF|p.L525Sfs*6|3|0.27|ENSG00000105722|chr19:42248543-42248543|C/-|frameshift_variant;ENSG00000105722|ENST00000222329|ERF;ENST00000596818.1_1_19:42754481-42759151:-|nuORF;ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ERF|p.G240Vfs*31|1|0.3|ENSG00000105722|chr19:42249393-42249393|C/-|frameshift_variant;ERF|p.G299Efs*12|1|0.23|ENSG00000105722|chr19:42249216-42249216|C/-|frameshift_variant;ENSG00000268041|ENST00000597630|ERFL;ENSG00000253831|ENST00000454449|ETV3L;ENSG00000117036|ENST00000368192|ETV3	ERF|p.L525Sfs*6|3|0.27|ENSG00000105722|chr19:42248543-42248543|C/-|frameshift_variant	ERF|p.L525Sfs*6|3|0.27|ENSG00000105722|chr19:42248543-42248543|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	357.54150390625	3	357.539294	1069.59605	0.7204	0.00025757	2.0817	0.00074429	2.8021	0.0010019	357.5400435183608	23.428	0.88273	23.428	23.049	23.932	0					45	20	4	0	0	0	0.66372	1	7715	7715		38.806	11.759	1	575150			49484	2391	32620	32761	50115	50115					0.06403825207939917
WHGRIKGGM	9	Oxidation (M)	_WHGRIKGGM(Oxidation (M))_		WHGRIKGGM(1)		WHGRIKGGM(58)	0	0	1		PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2696533203125	2	529.271635	1056.52872	0.11232	5.9448E-05	-1.3641	-0.00072197	-1.2518	-0.00066252	529.2697328791421	38.712	0.46498	38.712	38.625	39.09	0					30	18	3	0	0	0	0.23186	1	14698	14698		57.811	15.415	1	320510			49485	4240	32621	32762	50116	50116		175			0.002714717253411436
WHLLGDQTL	9	Unmodified	_WHLLGDQTL_					0	0	0		nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;POMT1|p.L421*|1|0.41|ENSG00000130714|chr9:131515440-131515440|C/-|frameshift_variant;ENST00000462375.5_1_9:134384326-134385572:+|nuORF	nc|ENSG00000130714|Q9Y6A1-4|POMT1	nc|ENSG00000130714|Q9Y6A1-4|POMT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.784423828125	2	541.785099	1081.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.198	1	23.198	22.698	23.698	0								0	0	0	0.3245	1	6676	6676		30.318	1.1477	1				49486	3662	32622	32763	50117	50117					0.01812858817538654
WHNDNKTF	8	Unmodified	_WHNDNKTF_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2432861328125	2	531.243598	1060.47264	0.12	6.3748E-05	-0.62689	-0.00033303	-0.50689	-0.00026928	531.2431052414562	29.481	0.89376	29.481	29.351	30.245	0					52	22	5	0	0	0	0.29152	1	10519	10519		85.359	3.0545	1	11690000			49487	5864	32623	32764	50118	50118					-0.0551745791049143
WHNVIRPN	8	Unmodified	_WHNVIRPN_					0	0	0			REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant	REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.277099609375	2	518.277775	1034.541	0.10723	5.5573E-05	-0.98592	-0.00051098	-0.87869	-0.00045541	518.2771456267498	23.373	0.27549	23.373	23.246	23.522	0					21	9	3	0	0	0	0.76283	1	6980	6980		25.45	0.93098	1	320820	+		49488	15384	32624	32765	50119	50119					0.025108314600174708
WHQAPWGEFS	10	Unmodified	_WHQAPWGEFS_					0	0	0		ENST00000376861.5_1_6:29690684-29691103:+|nuORF	ENST00000376861.5_1_6:29690684-29691103:+|nuORF	ENST00000376861.5_1_6:29690684-29691103:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	622.7786865234375	2	622.777805	1243.54106	1.2449	0.00077527	0.42327	0.0002636	1.6681	0.0010389	622.7780916152066	15.187	0.1592	15.187	15.13	15.289	0					5	3	2	0	0	0	0.44469	1	4116	4116		51.335	3.6781	1	377580			49489	9046	32625	32766	50120	50120					-0.07097213330644081
WHQLPGAVN	9	Unmodified	_WHQLPGAVN_					0	0	0		ENST00000243903.5_1_20:37400706-37400778:+|nuORF	ENST00000243903.5_1_20:37400706-37400778:+|nuORF	ENST00000243903.5_1_20:37400706-37400778:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2637634277344	2	511.264333	1020.51411	0.02179	1.1141E-05	-1.0774	-0.00055083	-1.0556	-0.00053969	511.26363831134285	35.577	0.26854	35.577	35.484	35.752	0					10	5	3	0	0	0	0.53083	1	13744	13744		29.15	1.2673	1	174370			49490	8220	32626	32767	50121	50121					0.004677228488390028
WHSWTGTTR	9	Unmodified	_WHSWTGTTR_					0	0	0			REV__ENST00000599599.5_2_19:57125204-57132656:+|nuORF	REV__ENST00000599599.5_2_19:57125204-57132656:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.2676391601562	2	566.270147	1130.52574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.738	1	25.738	25.238	26.238	0								0	0	0	0.38404	1	8044	8044		15.642	1.5047	1		+		49491	20590	32627	32768	50122	50122					-0.034300801278277504
WHVENSSSI	9	Unmodified	_WHVENSSSI_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.748046875	2	529.748713	1057.48287	0.28658	0.00015181	-1.8045	-0.00095595	-1.518	-0.00080414	529.7478083264359	28.316	0.35756	28.316	28.207	28.565	0					19	7	4	0	0	0	0.078509	2	10365	10346;10365		85.161	8.614	1	2021000	+		49492	15117	32628	32769	50123;50124	50124					-0.04356894975899195
WHVENSSSI	9	Unmodified	_WHVENSSSI_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.748046875	2	529.748713	1057.48287	-1.1865	-0.00062854	-0.56045	-0.0002969	-1.7469	-0.00092544	529.7483625066723	28.1	0.22053	28.1	28.02	28.24	0					9	5	2	0	0	0	0.098791	1	9271	9271		79.713	13.283	1	286920	+		49493	15117	32628	32769	50125	50125					-0.04356894975899195
WHYYKFRPRWN	11	Unmodified	_WHYYKFRPRWN_					0	0	0			REV__nc|ENSG00000124067|Q9UP95-4|SLC12A4	REV__nc|ENSG00000124067|Q9UP95-4|SLC12A4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	826.9118041992188	2	826.915301	1651.81605	1.4098	0.0011658	-2.5655	-0.0021215	-1.1557	-0.00095567	827.4154939060779	39.109	0.95882	39.109	38.447	39.406	0					68	53	2	0	0	0	0.82504	2	13167	13060;13167		9.7057	3.2027	1	95001	+		49494	14374	32629	32770	50126;50127	50127					0.01621443868202732
WIADLVRS	8	Unmodified	_WIADLVRS_					0	0	0			REV__ENSG00000196943|ENST00000267425|NOP9	REV__ENSG00000196943|ENST00000267425|NOP9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2702941894531	2	480.269084	958.523616	2.3163	0.0011124	-0.1213	-5.8256E-05	2.195	0.0010542	480.26917920909074	18.565	0.4143	18.565	18.288	18.702	0					20	8	3	0	0	0	0.43813	1	5586	5586		66.429	4.3219	1	384740	+		49495	17294	32630	32771	50128	50128					0.04269491134380132
WIALTEKQLE	10	Unmodified	_WIALTEKQLE_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	615.8381958007812	2	615.840071	1229.66559	-2.0254	-0.0012473	-1.3337	-0.00082138	-3.3592	-0.0020687	615.8391245275178	22.462	0.15472	22.462	22.362	22.517	0					5	3	2	0	0	0	0.39647	1	6685	6685		36.447	0	1	210860	+		49496	17388	32631	32772	50129	50129					0.05994239366032161
WICGVGLLA	9	Unmodified	_WICGVGLLA_					0	0	0			REV__ENSG00000166573|ENST00000299727|GALR1	REV__ENSG00000166573|ENST00000299727|GALR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	466.25860595703125	2	466.257131	930.499709	4.0438	0.0018855	-1.0147	-0.00047311	3.0291	0.0014124	466.25662971593556	29.446	0.24564	29.446	29.362	29.608	0					16	9	3	0	0	0	0.31222	1	9582	9582		49.211	49.211	1	231330	+		49497	16131	32632	32773	50130	50130					0.03167934376347148
WICRKRKK	8	Unmodified	_WICRKRKK_					0	0	0			REV__ENST00000486146.2_1_2:231068050-231077551:-|nuORF	REV__ENST00000486146.2_1_2:231068050-231077551:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.343994140625	2	559.342395	1116.67024	1.7705	0.00099031	1.4543	0.00081348	3.2248	0.0018038	559.3431559075989	11.639	0.085701	11.639	11.577	11.663	0					4	2	2	0	0	0	0.79567	1	2435	2435		14.664	14.664	1	82186	+		49498	14829	32633	32774	50131	50131					0.11656889818459604
WIDPVLRPL	9	Unmodified	_WIDPVLRPL_					0	0	0		ENST00000522720.1_1_8:101733810-101734948:-|nuORF;ENST00000520804.1_1_8:101733810-101734948:-|nuORF	ENST00000522720.1_1_8:101733810-101734948:-|nuORF	ENST00000522720.1_1_8:101733810-101734948:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	370.2239685058594	3	370.221965	1107.64407	3.1939	0.0011825	1.8487	0.00068444	5.0426	0.0018669	370.22261653963176	25.187	0.32072	25.187	25.127	25.448	0					10	6	2	0	0	0	0.50858	1	8826	8826		31.53	5.9558	1	548890			49499	10305	32634	32775	50132	50132					0.09454899127990757
WIHFGLVT	8	Unmodified	_WIHFGLVT_					0	0	0			REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7681884765625	2	486.76872	971.522887	-0.23569	-0.00011473	-1.5956	-0.00077668	-1.8313	-0.0008914	486.7680664007272	34.72	0.26923	34.72	34.609	34.878	0					14	9	3	0	0	0	0.66238	1	12309	12309		39.021	1.8624	1	152620	+		49500	19937	32635	32776	50133	50133					0.0359869648533504
WIHVGSGSL	9	Unmodified	_WIHVGSGSL_					0	0	0			REV__nc|ENSG00000085871|Q99735-2|MGST2	REV__nc|ENSG00000085871|Q99735-2|MGST2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	478.25335693359375	2	478.253434	954.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.146	1	39.146	38.646	39.646	0								0	0	0	0.22106	1	15385	15385		47.916	1.9636	1		+		49501	20945	32636	32777	50134	50134					0.013249181003061494
WIKNPNQI	8	Unmodified	_WIKNPNQI_					0	0	0		tr|U7SVL7|U7SVL7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01269PE=4SV=1	tr|U7SVL7|U7SVL7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01269PE=4SV=1	tr|U7SVL7|U7SVL7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01269PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	338.191650390625	3	338.190665	1011.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.914	1	20.914	20.414	21.414	0								0	0	0	1.7419	1	5918	5918		42.396	18.873	1				49502	22844	32637	32778	50135	50135					0.04485180025710633
WIPYFVLG	8	Unmodified	_WIPYFVLG_					0	0	0			REV__ENST00000541788.1_22:38616387-38617064:-|nuORF	REV__ENST00000541788.1_22:38616387-38617064:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.7748107910156	2	497.773471	993.53239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.631	1	15.631	15.131	16.131	0								0	0	0	1.7419	1	3547	3547		24.504	2.5441	1		+		49503	20141	32638	32779	50136	50136					0.03536464770866132
WIQKTKMV	8	Unmodified	_WIQKTKMV_					0	0	0			REV__RNF145|p.T570Sfs*23|1|0.07|ENSG00000145860|chr5:159158953-159158954|-/AGCATAC|frameshift_variant	REV__RNF145|p.T570Sfs*23|1|0.07|ENSG00000145860|chr5:159158953-159158954|-/AGCATAC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.2981567382812	2	517.296788	1032.57902	3.3193	0.0017171	-0.64385	-0.00033306	2.6755	0.001384	517.2964671781517	16.325	0.16711	16.325	16.217	16.384	0					9	3	3	0	0	0	0.3961	1	4506	4506		71.296	15.791	1	3162700	+		49504	15291	32639	32780	50137	50137					0.06403581330482666
WIQLLFQV	8	Unmodified	_WIQLLFQV_					0	0	0		nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	523.8057861328125	2	523.805303	1045.59605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.99	1	48.99	48.49	49.49	0								0	0	0	1.7419	1	14841	14841		25.45	0	1				49505	4959	32640	32781	50138	50138					0.07507825207949281
WIQPPGRSC	9	Unmodified	_WIQPPGRSC_					0	0	0		ENST00000423902.6_1_8:61591404-61653838:+|nuORF	ENST00000423902.6_1_8:61591404-61653838:+|nuORF	ENST00000423902.6_1_8:61591404-61653838:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2615356445312	2	522.258194	1042.50183	3.4009	0.0017762	1.1668	0.0006094	4.5678	0.0023856	522.2597563486988	30.147	0.41233	30.147	29.913	30.325	0					19	8	3	0	0	0	0.25716	1	11149	11149		54.776	8.8244	1	962980			49506	9415	32641	32782	50139	50139					-0.017716368858373244
WIRCLLKN	8	Unmodified	_WIRCLLKN_					0	0	0		ENST00000449570.6_1_3:9798246-9807816:+|nuORF	ENST00000449570.6_1_3:9798246-9807816:+|nuORF	ENST00000449570.6_1_3:9798246-9807816:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	523.3035888671875	2	523.302404	1044.59026	3.4155	0.0017873	-0.39453	-0.00020646	3.0209	0.0015809	523.3020642324253	49.131	1.128	49.131	48.861	49.989	0					112	56	3	0	0	0	0.76283	1	19634	19634		25.45	2.4077	1	276720			49507	9639	32642	32783	50140	50140					0.06974403424624143
WIRSVPIWERA	11	Unmodified	_WIRSVPIWERA_					0	0	0		nc|ENSG00000088002|O00204-2|SULT2B1;ENSG00000088002|ENST00000201586|SULT2B1	nc|ENSG00000088002|O00204-2|SULT2B1	nc|ENSG00000088002|O00204-2|SULT2B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	706.8887939453125	2	706.893503	1411.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.451	1	35.451	34.951	35.951	0								0	0	0	0.40356	1	12630	12630		36.318	5.9999	1				49508	1771	32643	32784	50141	50141					0.08303834371076846
WISGDEQAK	9	Unmodified	_WISGDEQAK_					0	0	0			REV__BTN2A2|p.C169Wfs*16|1|0.3|ENSG00000124508|chr6:26388076-26388086|GCATATCTGGA/-|frameshift_variant	REV__BTN2A2|p.C169Wfs*16|1|0.3|ENSG00000124508|chr6:26388076-26388086|GCATATCTGGA/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.2504272460938	2	517.251089	1032.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.754	1	16.754	16.254	17.254	0								0	0	0	0.27025	1	4852	4852		40.778	4.3314	1		+		49509	12305	32644	32785	50142	50142					-0.0273201083314234
WITATLKEI	9	Unmodified	_WITATLKEI_					0	0	0			REV__nc|ENSG00000186416|O15226|NKRF	REV__nc|ENSG00000186416|O15226|NKRF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	358.8764953613281	3	358.877975	1073.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.533	1	15.533	15.033	16.033	0								0	0	0	0.30504	1	4117	4117		34.173	3.8548	1		+		49510	17077	32645	32786	50143	50143					0.07823486654206135
WIVARRAFQ	9	Unmodified	_WIVARRAFQ_					0	0	0		ENST00000480109.2_1_1:66820498-66820537:+|nuORF	ENST00000480109.2_1_1:66820498-66820537:+|nuORF	ENST00000480109.2_1_1:66820498-66820537:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.8292236328125	2	573.830175	1145.6458	-0.11811	-6.7773E-05	-0.36093	-0.00020711	-0.47904	-0.00027489	573.8300025604445	45.036	0.10528	45.036	44.967	45.072	0					11	6	2	0	0	0	0.57706	1	16808	16808		24.203	0.68005	1	82192			49511	9947	32646	32787	50144	50144					0.0787995293660515
WIVILNGL	8	Unmodified	_WIVILNGL_					0	0	0			REV__ENSG00000169836|ENST00000304883|TACR3	REV__ENSG00000169836|ENST00000304883|TACR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	464.2845153808594	2	464.286746	926.558939	-0.48446	-0.00022493	-3.4405	-0.0015974	-3.9249	-0.0018223	464.28541543037295	35.089	0.46825	35.089	34.981	35.449	0					17	9	4	0	0	0	0.29779	1	13523	13523		83.287	6.4406	1	450520	+		49512	16337	32647	32788	50145	50145					0.0927215366219798
WIVPLDNLTK	10	Unmodified	_WIVPLDNLTK_					0	0	0		nc|ENSG00000128567|O00592-2|PODXL;ENSG00000128567|ENST00000378555|PODXL;ENST00000484346.1_1_7:131189072-131190857:-|nuORF;ENST00000446198.5_1_7:131189072-131193853:-|nuORF	nc|ENSG00000128567|O00592-2|PODXL	nc|ENSG00000128567|O00592-2|PODXL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	599.8436279296875	2	599.845156	1197.67576	-0.57505	-0.00034494	-2.0724	-0.0012431	-2.6474	-0.001588	599.8439409219275	31.243	0.22079	31.243	31.132	31.352	0					17	8	3	0	0	0	0.2538	1	10326	10326		72.879	2.4807	1	127040			49513	3547	32648	32789	50146	50146					0.08482847091249823
WIVQGKGR	8	Unmodified	_WIVQGKGR_					0	0	0			REV__ENST00000515734.2_1_5:59783993-59785590:+|nuORF	REV__ENST00000515734.2_1_5:59783993-59785590:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.27618408203125	2	472.277244	942.539935	-0.36984	-0.00017467	-1.8202	-0.00085966	-2.1901	-0.0010343	472.27634438509114	34.613	0.12737	34.613	34.534	34.662	0					8	5	2	0	0	0	0.7126	1	11335	11335		31.955	3.7006	1	58549	+		49514	19915	32649	32790	50147	50147					0.0663661709114649
WKACLLLI	8	Unmodified	_WKACLLLI_					0	0	0		ENST00000562968.1_1_16:27356608-27356716:+|nuORF	ENST00000562968.1_1_16:27356608-27356716:+|nuORF	ENST00000562968.1_1_16:27356608-27356716:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	480.2921447753906	2	480.290974	958.567395	0.93121	0.00044725	1.4157	0.00067994	2.3469	0.0011272	480.29158549839514	24.619	0.25815	24.619	24.513	24.771	0					12	5	3	0	0	0	0.34071	1	8529	8529		77.944	16.972	1	537940			49515	10730	32650	32791	50148	50148					0.0864538430715811
WKCDKITK	8	Unmodified	_WKCDKITK_					0	0	0			REV__ENSG00000161654|ENST00000293406|LSM12	REV__ENSG00000161654|ENST00000293406|LSM12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2796936035156	2	511.278595	1020.54264	1.3936	0.00071253	0.88878	0.00045442	2.2824	0.0011669	511.2790987105613	20.984	0.1677	20.984	20.926	21.093	0					6	3	2	0	0	0	0.42778	1	6770	6770		67.494	14.557	1	1431500	+		49516	15785	32651	32792	50149	50149					0.03318704433763742
WKCGFFKR	8	Unmodified	_WKCGFFKR_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6	ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000091409|P23229-7|ITGA6	ENSG00000005884|ENST00000320031|ITGA3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	536.2783203125	2	536.281472	1070.54839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.936	1	36.936	36.436	37.436	0								0	0	0	1.7419	1	12500	12500		40.573	1.819	1				49517	967;1856	32652	32793	50150	50150					0.015938477360805337
WKDLMMKV	8	Unmodified	_WKDLMMKV_					0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.7771606445312	2	525.777373	1049.54019	1.7709	0.00093112	-0.90846	-0.00047765	0.86247	0.00045347	525.7769740416736	37.031	0.27478	37.031	36.962	37.237	0					12	8	2	0	0	0	0.53424	1	14450	14450		65.803	11.027	1	611680	+		49518	17076	32653	32794	50151	50151					0.01740532704479847
WKHTLVHK	8	Unmodified	_WKHTLVHK_					0	0	0			REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF	REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.8067016601562	2	524.806168	1047.59778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.659	1	42.659	42.159	43.159	0								0	0	0	1.7419	1	16141	16141		35.618	2.8678	1		+		49519	18517	32654	32795	50152	50152					0.07588879016566352
WKILRMVCQKL	11	Unmodified	_WKILRMVCQKL_					0	0	0		ENST00000520849.5_1_8:89341227-89341371:+|nuORF	ENST00000520849.5_1_8:89341227-89341371:+|nuORF	ENST00000520849.5_1_8:89341227-89341371:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	709.4110717773438	2	709.41216	1416.80977	-1.6551	-0.0011741	-0.43344	-0.00030749	-2.0885	-0.0014816	709.4119159096513	31.02	0.15713	31.02	30.92	31.077	0					5	3	2	0	0	0	0.78104	1	11672	11672		19.104	4.9664	1	143680			49520	10306	32655	32796	50153	50153					0.11803466320839107
WKKDIVVAS	9	Unmodified	_WKKDIVVAS_					0	0	0		nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62	nc|ENSG00000075702|O43379|WDR62	nc|ENSG00000075702|O43379|WDR62	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.3057861328125	2	523.305667	1044.59678	1.1914	0.00062346	-2.749	-0.0014386	-1.5576	-0.00081509	523.3042769069527	50.643	0.29546	50.643	50.575	50.87	0					21	18	2	0	0	0	0.5879	1	16570	16570		23.042	0.46283	1	51654			49521	1546	32656	32797	50154	50154					0.07626619856978323
WKKEVTVEH	9	Unmodified	_WKKEVTVEH_					0	0	0			REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.3117065429688	2	578.31148	1154.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.386	1	28.386	27.886	28.886	0								0	0	0	0.37517	1	9147	9147		6.7355	0	1		+		49522	13992	32657	32798	50155	50155					0.03728816880334307
WKKYYQRRFKL	11	Unmodified	_WKKYYQRRFKL_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.3131713867188	3	539.312177	1614.9147	0.6866	0.00037029	1.1111	0.00059924	1.7977	0.00096953	539.3126190386193	21.747	0.11919	21.747	21.687	21.807	0					4	2	2	0	0	0	0.82318	1	7141	7141		10.104	6.4848	1	196610	+		49523	17051	32658	32799	50156	50156					0.13184047113236375
WKNNGNVNS	9	Unmodified	_WKNNGNVNS_					0	0	0		RUSC1|p.V332Sfs*13|1|0.21|ENSG00000160753|chr1:155322767-155322767|G/-|frameshift_variant;nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENSG00000160753|ENST00000368352|RUSC1	RUSC1|p.V332Sfs*13|1|0.21|ENSG00000160753|chr1:155322767-155322767|G/-|frameshift_variant	RUSC1|p.V332Sfs*13|1|0.21|ENSG00000160753|chr1:155322767-155322767|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7485961914062	2	516.746505	1031.47846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.871	1	11.871	11.371	12.371	0								0	0	0	0.24544	1	2389	2389		44.377	1.981	1				49524	5382	32659	32800	50157	50157					-0.036023593988147695
WKPLAEDSP	9	Unmodified	_WKPLAEDSP_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.762451171875	2	521.763832	1041.51311	0.79287	0.00041369	2.7052	0.0014115	3.498	0.0018252	521.7652632064257	26.059	0.55887	26.059	25.734	26.293	0					21	15	2	0	0	0	0.56424	1	7833	7833		25.574	0	1	176400			49525	1318	32660	32801	50158	50158					-0.00598536310712916
WKSLADEY	8	Unmodified	_WKSLADEY_					0	0	0		ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	506.2426452636719	2	506.242732	1010.47091	0.13972	7.0731E-05	-0.38307	-0.00019393	-0.24335	-0.00012319	506.24265105615564	29.171	0.23782	29.171	29.07	29.308	0					8	5	2	0	0	0	0.44433	1	10785	10785		65.803	7.9919	1	161620			49526	1902	32661	32802	50159	50159					-0.033905117191011414
WKVSLLLK	8	Unmodified	_WKVSLLLK_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.82122802734375	2	493.823495	985.632438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.15	1	16.15	15.65	16.65	0								0	0	0	1.7419	1	3817	3817		34.173	0.65696	1		+		49527	14318	32662	32803	50160	50160					0.13904702104662192
WLAAGLRAPHY	11	Unmodified	_WLAAGLRAPHY_					0	0	0			REV__nc|ENSG00000213402|Q14761|PTPRCAP	REV__nc|ENSG00000213402|Q14761|PTPRCAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	627.8378295898438	2	627.840739	1253.66693	-0.047942	-3.01E-05	-4.2503	-0.0026685	-4.2983	-0.0026986	627.8378805416285	33.859	0.22683	33.859	33.817	34.044	0					7	5	2	0	0	0	0.3828	1	13007	13007		53.351	12.573	1	65400	+		49528	21207	32663	32804	50161	50161					0.050239182454788534
WLAEVNGKK	9	Unmodified	_WLAEVNGKK_					0	0	0		nc|ENSG00000107554|Q6XZF7-2|DNMBP;ENSG00000107554|ENST00000324109|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7935791015625	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.815	1	17.815	17.315	18.315	0								0	0	0	0.3245	1	4323	4323		30.318	2.2362	1				49529	2486	32664	32805	50162	50162					0.056334491971938405
WLAGYSSI	8	Unmodified	_WLAGYSSI_					0	0	0			REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.72900390625	2	448.729261	895.443968	2.5513	0.0011448	-3.4516	-0.0015488	-0.90028	-0.00040398	448.72781141300555	47.286	0.0961	47.286	47.246	47.343	0					6	5	2	0	0	0	0.68754	1	18895	18895		35.201	3.2459	1	53981	+		49530	13717	32665	32806	50163	50163					-0.007935755396147215
WLAIRGCLEL	10	Carbamidomethyl (C)	_WLAIRGC(Carbamidomethyl (C))LEL_	WLAIRGC(1)LEL		WLAIRGC(93)LEL		0	1	0			REV__ENST00000379426.1_1_6:11575846-11576137:+|nuORF	REV__ENST00000379426.1_1_6:11575846-11576137:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	615.8382568359375	2	615.836808	1229.65906	3.0238	0.0018622	-0.75819	-0.00046692	2.2656	0.0013952	615.8363702981194	22.564	0.21605	22.564	22.455	22.671	0					10	4	3	0	0	0	0.11278	1	7536	7536		93.195	93.195	1	1544700	+		49531	18757	32666	32807	50164	50164	671				0.05342022933677981
WLAMFGVTD	9	Unmodified	_WLAMFGVTD_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.7533569335938	2	520.249503	1038.48445	0.067324	3.5025E-05	-3.0443	-0.0015838	-2.977	-0.0015488	520.2474294281612	29.566	0.85475	29.566	28.918	29.773	0					27	21	2	0	0	0	0.30268	1	10565	10565		50.025	4.0726	1	423990	+		49532	12922	32667	32808	50165	50165					-0.03324977211514124
WLAVVALGA	9	Unmodified	_WLAVVALGA_					0	0	0		ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	450.77020263671875	2	450.271096	898.527639	-2.6044	-0.0011727	-2.7868	-0.0012548	-5.3912	-0.0024275	450.26994245374675	27.929	0.21891	27.929	27.773	27.992	0					10	5	2	0	0	0	0.52436	1	9202	9202		29.842	0	1	68193			49533	6118	32668	32809	50166	50166					0.07431580628076517
WLCLAQVR	8	Unmodified	_WLCLAQVR_					0	0	0			REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.7743225097656	2	494.77348	987.532406	0.68362	0.00033823	1.134	0.00056105	1.8176	0.00089929	494.77412803669984	24.849	0.31193	24.849	24.645	24.957	0					16	6	4	0	0	0	0.41952	1	8757	8757		68.485	68.485	1	4305500	+		49534	13357	32669	32810	50167	50167					0.0381414149920829
WLCLGVIVL	9	Unmodified	_WLCLGVIVL_					0	0	0			REV__nc|ENSG00000133475|P36268-2|GGT2P	REV__nc|ENSG00000133475|P36268-2|GGT2P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.3047180175781	2	508.304081	1014.59361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.938	1	36.938	36.438	37.438	0								0	0	0	0.21213	1	12501	12501		49.211	13.593	1		+		49535	13509	32670	32811	50168	50168					0.08689653478643322
WLCLVKTK	8	Unmodified	_WLCLVKTK_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	495.79486083984375	2	495.793881	989.573209	2.8546	0.0014153	-0.7859	-0.00038964	2.0687	0.0010257	495.7935024688116	23.955	0.16495	23.955	23.897	24.062	0					10	3	4	0	0	0	0.30437	1	8206	8206		82.305	13.82	1	1648400	+		49536	13940	32671	32812	50169	50169					0.0780048281882273
WLCSKLGL	8	Unmodified	_WLCSKLGL_					0	0	0		TMEM169|p.C253Y|1|0.27|ENSG00000163449|chr2:216100406-216100406|G/A|missense_variant;ENSG00000163449|ENST00000437356|TMEM169	TMEM169|p.C253Y|1|0.27|ENSG00000163449|chr2:216100406-216100406|G/A|missense_variant	TMEM169|p.C253Y|1|0.27|ENSG00000163449|chr2:216100406-216100406|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.2546081542969	2	460.257131	918.499709	-0.15318	-7.0503E-05	1.8168	0.00083619	1.6636	0.00076568	460.25803879782393	31.052	0.33213	31.052	30.949	31.281	0					18	7	3	0	0	0	0.68432	1	11636	11636		35.618	1.4457	1	4495900			49537	5556	32672	32813	50170	50170					0.03719934376340461
WLDLIHSMV	9	Unmodified	_WLDLIHSMV_					0	0	0			REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF	REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.29248046875	2	557.291702	1112.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.394	1	44.394	43.894	44.894	0								0	0	0	0.35507	1	17786	17786		24.203	1.1603	1		+		49538	17928	32673	32814	50171	50171					0.01706973605246276
WLEKGQELQL	10	Unmodified	_WLEKGQELQL_					0	0	0			REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	415.2294616699219	3	415.227556	1242.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.028	1	20.028	19.528	20.528	0								0	0	0	0.38093	1	5292	5292		36.318	5.7488	1		+		49539	17295	32674	32815	50172	50172					0.04921355223291357
WLGLALLAA	9	Unmodified	_WLGLALLAA_					0	0	0		ENST00000529593.1_1_8:146277868-146278266:+|nuORF;ENST00000524395.5_1_8:146277868-146278117:+|nuORF	ENST00000529593.1_1_8:146277868-146278266:+|nuORF	ENST00000529593.1_1_8:146277868-146278266:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	464.28485107421875	2	464.286746	926.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.917	1	36.917	36.417	37.417	0								0	0	0	0.28056	1	12494	12494		39.021	0	1				49540	10344	32675	32816	50173	50173					0.09272153662175242
WLGLKTIAQ	9	Unmodified	_WLGLKTIAQ_					0	0	0		nc|ENSG00000106479|O60290-2|ZNF862;ENSG00000106479|ENST00000223210|ZNF862	nc|ENSG00000106479|O60290-2|ZNF862	nc|ENSG00000106479|O60290-2|ZNF862	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.3065185546875	2	515.30821	1028.60187	-1.5634	-0.00080561	-1.8181	-0.00093688	-3.3815	-0.0017425	515.3073820873856	25.179	0.13793	25.179	25.114	25.252	0					6	3	2	0	0	0	0.098791	1	7967	7967		79.713	4.6693	1	122890			49541	2442	32676	32817	50174	50174					0.08870923719587154
WLGTISSIFG	10	Unmodified	_WLGTISSIFG_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	541.2764282226562	2	540.78985	1079.56515	0.28111	0.00015202	-1.4819	-0.00080141	-1.2008	-0.00064939	540.7891267593452	21.212	0.18826	21.212	21.123	21.311	0					10	4	3	0	0	0	0.61238	1	6679	6679		35.618	10.044	1	620180	+		49542	15535	32677	32818	50175	50175					0.02854627103056373
WLGVSQPN	8	Unmodified	_WLGVSQPN_					0	0	0			REV__ENST00000265978.8_1_11:6245654-6255937:-|nuORF	REV__ENST00000265978.8_1_11:6245654-6255937:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	450.73370361328125	2	450.732335	899.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.672	1	34.672	34.172	35.172	0								0	0	0	1.7419	1	13312	13312		35.618	2.1027	1		+		49543	18080	32678	32819	50176	50176					-0.003630573080954491
WLHSTWAQ	8	Unmodified	_WLHSTWAQ_					0	0	0			REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	514.7505493164062	2	514.751059	1027.48756	-0.49224	-0.00025338	-0.084871	-4.3687E-05	-0.57711	-0.00029707	514.7507937567326	11.355	0.14555	11.355	11.281	11.427	0					14	5	4	0	0	0	0.79719	1	2289	2289		18.324	1.8513	1	540990	+		49544	12792	32679	32820	50177	50177					-0.025079660424808026
WLIKQTIPWMP	11	Unmodified	_WLIKQTIPWMP_					0	0	0			REV__CHST15|p.R537W|1|0.36|ENSG00000182022|chr10:124010226-124010226|G/A|missense_variant	REV__CHST15|p.R537W|1|0.36|ENSG00000182022|chr10:124010226-124010226|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	707.3924560546875	2	706.891583	1411.76861	-2.4531	-0.0017341	-1.0287	-0.00072719	-3.4818	-0.0024613	707.3924130458636	36.681	1.1514	36.681	35.9	37.052	0					78	48	2	0	0	0	0.78104	1	13093	13093		19.104	2.3861	1	83252	+		49545	12498	32680	32821	50178	50178					0.07920028553007796
WLIMSSYSGI	10	Oxidation (M)	_WLIM(Oxidation (M))SSYSGI_		WLIM(1)SSYSGI		WLIM(91)SSYSGI	0	0	1			REV__PTPRB|p.P401Lfs*55|1|0.07|ENSG00000127329|chr12:70590158-70590158|G/-|frameshift_variant	REV__PTPRB|p.P401Lfs*55|1|0.07|ENSG00000127329|chr12:70590158-70590158|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.7886962890625	2	586.78645	1171.55835	3.1993	0.0018773	0.48405	0.00028403	3.6834	0.0021614	586.7867176711425	16.325	0.36588	16.325	16.217	16.583	0					15	7	3	0	0	0	0.12663	1	4508	4508		90.777	8.0262	1	2830000	+		49546	21428	32681	32822	50179	50179		771			-0.02057053839848777
WLKCVSLK	8	Unmodified	_WLKCVSLK_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.78692626953125	2	488.786056	975.557558	2.6065	0.001274	-0.43274	-0.00021152	2.1737	0.0010625	488.78581505868345	23.754	0.26449	23.754	23.65	23.914	0					15	5	4	0	0	0	0.44767	1	8091	8091		64.207	12.872	1	1603400			49547	5811	32682	32823	50180	50180					0.06880196301779051
WLLCFVSQ	8	Unmodified	_WLLCFVSQ_					0	0	0		nc|ENSG00000184809|P59052|B3GALT5-AS1	nc|ENSG00000184809|P59052|B3GALT5-AS1	nc|ENSG00000184809|P59052|B3GALT5-AS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2554626464844	2	498.254588	994.494624	3.3847	0.0016864	-0.6659	-0.00033179	2.7188	0.0013546	498.25409990465903	34.594	0.16319	34.594	34.55	34.713	0					11	7	2	0	0	0	0.58597	1	11676	11676		51.335	0	1	57552			49548	11681	32683	32824	50181	50181					-0.00284369486257674
WLLKLCLK	8	Unmodified	_WLLKLCLK_					0	0	0			REV__ENST00000577142.1_1_17:79649546-79649603:-|nuORF	REV__ENST00000577142.1_1_17:79649546-79649603:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.82086181640625	2	508.819899	1015.62524	-0.073484	-3.739E-05	2.354	0.0011978	2.2805	0.0011604	508.8210301007652	27.686	0.1691	27.686	27.611	27.78	0					5	3	2	0	0	0	0.59411	1	9967	9967		50.025	5.6474	1	213960	+		49549	20422	32684	32825	50182	50182					0.11805646232562594
WLLPRAGG	8	Unmodified	_WLLPRAGG_					0	0	0		nc|ENSG00000279245|Q8IWN6|FAM223A;nc|ENSG00000272681|A6NKX1|FAM223B	nc|ENSG00000279245|Q8IWN6|FAM223A	nc|ENSG00000279245|Q8IWN6|FAM223A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2511291503906	2	435.253237	868.491922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.917	1	45.917	45.417	46.417	0								0	0	0	1.7419	1	15573	15573		21.702	2.3424	1				49550	11802	32685	32826	50183	50183					0.0524154317108696
WLLPRAGG	8	Unmodified	_WLLPRAGG_					0	0	0		nc|ENSG00000279245|Q8IWN6|FAM223A;nc|ENSG00000272681|A6NKX1|FAM223B	nc|ENSG00000279245|Q8IWN6|FAM223A	nc|ENSG00000279245|Q8IWN6|FAM223A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2513732910156	2	435.253237	868.491922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.276	1	46.276	45.776	46.776	0								0	0	0	1.7419	1	15649	15649		29.842	0.69198	1				49551	11802	32685	32826	50184	50184					0.0524154317108696
WLLPRAGG	8	Unmodified	_WLLPRAGG_					0	0	0		nc|ENSG00000279245|Q8IWN6|FAM223A;nc|ENSG00000272681|A6NKX1|FAM223B	nc|ENSG00000279245|Q8IWN6|FAM223A	nc|ENSG00000279245|Q8IWN6|FAM223A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	435.2507629394531	2	435.253237	868.491922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.524	1	46.524	46.024	47.024	0								0	0	0	1.7419	1	15698	15698		29.842	4.3914	1				49552	11802	32685	32826	50185	50185					0.0524154317108696
WLLRFPAP	8	Unmodified	_WLLRFPAP_					0	0	0			REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	500.2950134277344	2	500.292362	998.570172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.692	1	35.692	35.192	36.192	0								0	0	0	1.7419	1	13800	13800		62.978	3.0476	1		+		49553	12850	32686	32827	50186	50186					0.07082975756316046
WLLTLIIGKF	10	Unmodified	_WLLTLIIGKF_					0	0	0			REV__CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant	REV__CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.3766479492188	2	602.378635	1202.74272	-1.8885	-0.0011376	-1.2847	-0.00077388	-3.1732	-0.0019114	602.377891064081	32.489	0.20027	32.489	32.378	32.579	0					14	6	3	0	0	0	0.28675	1	11289	11289		66.429	9.9955	1	166380	+		49554	12361	32687	32828	50187	50187					0.1494550237302974
WLMASVCSLIA	11	Unmodified	_WLMASVCSLIA_					0	0	0			REV__ENST00000553142.5_1_12:58019947-58020121:-|nuORF	REV__ENST00000553142.5_1_12:58019947-58020121:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	597.8074340820312	2	597.306495	1192.59844	-0.56162	-0.00033546	0.070764	4.2268E-05	-0.49086	-0.00029319	597.3063606492964	34.816	0.49794	34.816	34.656	35.154	0					36	22	2	0	0	0	0.7098	1	11734	11734		26.693	3.1702	1	109920	+		49555	20216	32688	32829	50188	50188					0.009841695590921518
WLNPIQRNL	9	Unmodified	_WLNPIQRNL_					0	0	0		nc|ENSG00000196867|Q8NHY6-2|ZFP28;ZFP28|p.K559Nfs*50|1|0.36|ENSG00000196867|chr19:56554458-56554458|A/-|frameshift_variant;ENSG00000196867|ENST00000301318|ZFP28	nc|ENSG00000196867|Q8NHY6-2|ZFP28	nc|ENSG00000196867|Q8NHY6-2|ZFP28	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	385.2193603515625	3	385.220735	1152.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.145	1	13.145	12.645	13.645	0								0	0	0	0.38404	1	2926	2926		15.642	0.94814	1				49556	7399	32689	32830	50189	50189					0.07016229354144343
WLPGDGKGL	9	Unmodified	_WLPGDGKGL_					0	0	0		ENST00000551018.5_1_12:53693125-53693203:+|nuORF	ENST00000551018.5_1_12:53693125-53693203:+|nuORF	ENST00000551018.5_1_12:53693125-53693203:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.7552490234375	2	471.75581	941.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.547	1	36.547	36.047	37.047	0								0	0	0	0.35507	1	13793	13793		24.203	0.68005	1				49557	10620	32690	32831	50190	50190					0.023978022430469537
WLPLRAACGPS	11	Unmodified	_WLPLRAACGPS_					0	0	0			REV__ENST00000545703.5_1_X:117079506-117250600:-|nuORF	REV__ENST00000545703.5_1_X:117079506-117250600:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	585.809326171875	2	585.808051	1169.60155	1.4125	0.00082745	0.49556	0.0002903	1.9081	0.0011178	585.8083740300256	24.402	0.66057	24.402	24.196	24.857	0					37	13	5	0	0	0	0.26168	1	8524	8524		58.23	58.23	1	16818000	+		49558	20161	32691	32832	50191	50191					0.023531807281187866
WLPYWVTV	8	Unmodified	_WLPYWVTV_					0	0	0			REV__ENSG00000156738|ENST00000345732|MS4A1	REV__ENSG00000156738|ENST00000345732|MS4A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	532.2820434570312	2	532.284203	1062.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.275	1	36.275	35.775	36.775	0								0	0	0	1.7419	1	12290	12290		39.021	0.21535	1		+		49559	15639	32692	32833	50192	50192					0.025078497995536964
WLQLKDDEL	9	Unmodified	_WLQLKDDEL_					0	0	0		nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD	nc|ENSG00000198947|P11532-3|DMD	nc|ENSG00000198947|P11532-3|DMD	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.301513671875	2	580.303321	1158.59209	-0.03526	-2.0462E-05	-0.8968	-0.00052042	-0.93207	-0.00054088	580.8055835649315	25.602	0.61179	25.602	25.132	25.744	0					28	14	2	0	0	0	0.45358	1	8707	8707		37.159	1.5408	1	401520			49560	803	32693	32834	50193	50193					0.01913690923561262
WLRAELEA	8	Unmodified	_WLRAELEA_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	494.2650146484375	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.694	1	23.694	23.194	24.194	0								0	0	0	1.7419	1	7154	7154		35.618	2.8059	1				49561	4207	32694	32835	50194	50194					0.024731872717552505
WLRLAQYPA	9	Unmodified	_WLRLAQYPA_					0	0	0			REV__nc|ENSG00000167780|O75908-4|SOAT2	REV__nc|ENSG00000167780|O75908-4|SOAT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	373.2100524902344	3	373.209948	1116.60801	0.84711	0.00031615	-1.1838	-0.00044181	-0.3367	-0.00012566	373.20971744365426	43.748	0.67855	43.748	43.23	43.908	0					49	36	2	0	0	0	0.61124	1	17037	17037		14.137	0	1	67794	+		49562	16217	32695	32836	50195	50195					0.05437441951130495
WLRQRPTIGL	10	Unmodified	_WLRQRPTIGL_					0	0	0		nc|ENSG00000187122|O75093-2|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant;ENSG00000187122|ENST00000266058|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	413.8774108886719	3	413.915535	1238.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.773	1	29.773	29.273	30.273	0								0	0	0	0.4201	1	9723	9723		23.523	0.14478	1				49563	7183	32696	32837	50196	50196					0.1149618017091143
WLRRGRAS	8	Unmodified	_WLRRGRAS_					0	0	0			REV__ENST00000433555.1_2_3:9883921-9885645:-|nuORF	REV__ENST00000433555.1_2_3:9883921-9885645:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	501.2896423339844	2	501.291217	1000.56788	-0.6762	-0.00033897	-0.6799	-0.00034083	-1.3561	-0.0006798	501.29065224276917	49.713	0.3116	49.713	49.527	49.838	0					35	19	2	0	0	0	0.78978	1	14995	14995		21.96	9.1482	1	71908	+		49564	19187	32697	32838	50197	50197					0.06761940071237404
WLRSAAWNRPR	11	Unmodified	_WLRSAAWNRPR_					0	0	0		ENST00000311626.8_1_17:46629537-46651367:-|nuORF	ENST00000311626.8_1_17:46629537-46651367:-|nuORF	ENST00000311626.8_1_17:46629537-46651367:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	706.8890991210938	2	706.886544	1411.75853	1.4097	0.00099651	2.0989	0.0014837	3.5087	0.0024802	706.8880641004002	35.462	0.62062	35.462	35.324	35.944	0					40	30	2	0	0	0	0.7887	1	12034	12034		17.468	0.75062	1	144060			49565	8558	32698	32839	50198	50198					0.06912601662634188
WLRSATGR	8	Unmodified	_WLRSATGR_					0	0	0		ENST00000356956.5_2_6:160526248-160526377:+|nuORF	ENST00000356956.5_2_6:160526248-160526377:+|nuORF	ENST00000356956.5_2_6:160526248-160526377:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	316.1801452636719	3	316.178759	945.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.289	1	45.289	44.789	45.789	0								0	0	0	1.7419	1	14087	14087		15.642	2.6826	1				49566	8813	32699	32840	50199	50199					0.039511425687237534
WLRVELVPL	9	Unmodified	_WLRVELVPL_					0	0	0			REV__ENST00000314686.9_1_3:40518691-40519449:+|nuORF	REV__ENST00000314686.9_1_3:40518691-40519449:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.8472900390625	2	562.844959	1123.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.384	1	14.384	13.884	14.884	0								0	0	0	0.36056	1	3039	3039		15.642	0	1		+		49567	18289	32700	32841	50200	50200					0.11847472162094164
WLTMHVLLP	9	Unmodified	_WLTMHVLLP_					0	0	0		ENST00000502171.2_1_5:52405791-52405908:+|nuORF	ENST00000502171.2_1_5:52405791-52405908:+|nuORF	ENST00000502171.2_1_5:52405791-52405908:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.31396484375	2	555.312438	1108.61032	3.5653	0.0019798	-0.75167	-0.00041741	2.8136	0.0015624	555.3119022411182	39.108	0.65968	39.108	38.81	39.469	0					38	14	4	0	0	0	0.41354	1	15394	15394		40.573	4.1259	1	1032500			49568	10152	32701	32842	50201	50201					0.06036154364574031
WLTQLAQL	8	Unmodified	_WLTQLAQL_					0	0	0			REV__ENSG00000187609|ENST00000340951|EXD3	REV__ENSG00000187609|ENST00000340951|EXD3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	486.7767028808594	2	486.779285	971.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.865	1	31.865	31.365	32.365	0								0	0	0	1.7419	1	10592	10592		58.782	0.97068	1		+		49569	17126	32702	32843	50202	50202					0.05710661794171301
WLTTSLSPSPA	11	Unmodified	_WLTTSLSPSPA_					0	0	0		ENST00000355790.8_2_10:72100332-72136219:-|nuORF	ENST00000355790.8_2_10:72100332-72136219:-|nuORF	ENST00000355790.8_2_10:72100332-72136219:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	580.3020629882812	2	580.303321	1158.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.203	1	25.203	24.703	25.703	0								0	0	0	0.41918	1	7555	7555		32.812	1.2826	1				49570	8802	32703	32844	50203	50203					0.019136909235839994
WLVCVPLR	8	Unmodified	_WLVCVPLR_					0	0	0			REV__ENST00000455577.6_1_15:40531811-40531901:+|nuORF	REV__ENST00000455577.6_1_15:40531811-40531901:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.2876892089844	2	493.286223	984.557893	-1.2685	-0.00062572	1.7256	0.00085123	0.45716	0.00022551	493.2881357577599	21.322	0.13853	21.322	21.254	21.393	0					10	4	3	0	0	0	0.74117	1	6127	6127		28.254	1.5614	1	88418	+		49571	19342	32704	32845	50204	50204					0.06499616021631027
WLVGPFAPG	9	Unmodified	_WLVGPFAPG_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3;PLIN3|p.T415M|1|0.4|ENSG00000105355|chr19:4839253-4839253|G/A|missense_variant	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	472.2562255859375	2	472.255446	942.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.982	1	34.982	34.482	35.482	0								0	0	0	0.28056	1	12426	12426		39.021	9.8719	1				49572	2347	32705	32846	50205	50205					0.02279007593995175
WLVGRRGF	8	Unmodified	_WLVGRRGF_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D;ENST00000574510.1_1_17:7919510-7919845:+|nuORF	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.7849426269531	2	495.785236	989.555919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.722	1	43.722	43.222	44.222	0								0	0	0	1.7419	1	17082	17082		35.201	0	1				49573	3795	32706	32847	50206	50206					0.06072323328044149
WLWWHLHVQVR	11	Unmodified	_WLWWHLHVQVR_					0	0	0			REV__ENST00000361229.8_1_X:101976007-102003782:+|nuORF	REV__ENST00000361229.8_1_X:101976007-102003782:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.61572265625	3	520.6176	1558.83097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.778	1	49.778	49.278	50.278	0								0	0	0	0.45674	1	17961	17961		10.587	1.375	1		+		49574	18566	32707	32848	50207	50207					0.07390935736179927
WMATDLKNTM	10	Oxidation (M)	_WMATDLKNTM(Oxidation (M))_		WMATDLKNTM(1)		WM(-42)ATDLKNTM(42)	0	0	1			REV__ENSG00000109133|ENST00000504986|TMEM33	REV__ENSG00000109133|ENST00000504986|TMEM33	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	613.777099609375	2	613.780841	1225.54713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.684	1	43.684	43.184	44.184	0								0	0	0	0.35072	1	16450	16450		42.864	12.547	2		+		49575	13896	32708	32849	50208	50208		526			-0.056621992056307135
WMRENCCNW	9	Unmodified	_WMRENCCNW_					0	0	0		ENSG00000113391|ENST00000395965|FAM172A;nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A	ENSG00000113391|ENST00000395965|FAM172A	ENSG00000113391|ENST00000395965|FAM172A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	621.2368774414062	2	621.236078	1240.4576	0.17832	0.00011078	-0.018361	-1.1407E-05	0.15996	9.9373E-05	621.2363149645508	15.24	0.11511	15.24	15.161	15.277	0					7	3	3	0	0	0	0.61124	1	3270	3270		7.1934	0.45781	1	401250			49576	2801	32709	32850	50209	50209					-0.15300732365994918
WMRLYQQK	8	Unmodified	_WMRLYQQK_					0	0	0			REV__PHF14|p.E136Kfs*65|1|0.6|ENSG00000106443|chr7:10982660-10982660|A/-|frameshift_variant	REV__PHF14|p.E136Kfs*65|1|0.6|ENSG00000106443|chr7:10982660-10982660|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	576.804443359375	2	576.802768	1151.59098	0.89992	0.00051908	1.8763	0.0010822	2.7762	0.0016013	576.8039079346399	17.506	0.15331	17.506	17.437	17.59	0					11	5	3	0	0	0	0.32815	1	4174	4174		68.485	4.9508	1	260230	+		49577	21361	32710	32851	50210	50210					0.021251980736678888
WMRLYQQK	8	Unmodified	_WMRLYQQK_					0	0	0			REV__PHF14|p.E136Kfs*65|1|0.6|ENSG00000106443|chr7:10982660-10982660|A/-|frameshift_variant	REV__PHF14|p.E136Kfs*65|1|0.6|ENSG00000106443|chr7:10982660-10982660|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.8042602539062	2	576.802768	1151.59098	3.291	0.0018983	-0.82924	-0.00047831	2.4618	0.00142	576.8023920333226	17.759	0.31388	17.759	17.649	17.963	0					11	6	2	0	0	0	0.35045	1	5192	5192		55.504	0	1	3337200	+		49578	21361	32710	32851	50211	50211					0.021251980736678888
WMSVRWLLM	9	Unmodified	_WMSVRWLLM_					0	0	0			REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF	REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	611.3177490234375	2	611.317197	1220.61984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.053	1	39.053	38.553	39.553	0								0	0	0	0.3304	1	14856	14856		29.15	1.0681	1		+		49579	20375	32711	32852	50212	50212					0.018355993784552993
WMVNGLCKKAL	11	Unmodified	_WMVNGLCKKAL_					0	0	0		ENST00000368841.6_1_1:151666084-151666249:+|nuORF	ENST00000368841.6_1_1:151666084-151666249:+|nuORF	ENST00000368841.6_1_1:151666084-151666249:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	631.8405151367188	2	631.841036	1261.66752	-0.73249	-0.00046282	-0.28284	-0.00017871	-1.0153	-0.00064153	631.8409356242831	38.602	0.15317	38.602	38.51	38.664	0					15	8	2	0	0	0	0.77007	1	12998	12998		20.947	0.10978	1	240240			49580	8933	32712	32853	50213	50213					0.04715253578638112
WMVWVLGV	8	Unmodified	_WMVWVLGV_					0	0	0		ENSG00000137462|ENST00000642700|TLR2;TLR2|p.S240Ffs*7|1|0.41|ENSG00000137462|chr4:153703620-153703621|-/T|frameshift_variant	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	495.26727294921875	2	495.267499	988.520445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.396	1	15.396	14.896	15.896	0								0	0	0	1.7419	1	3345	3345		10.185	1.3624	1				49581	4165	32713	32854	50214	50214					0.025725247560217213
WMYVTWFFWFW	11	Unmodified	_WMYVTWFFWFW_					0	0	0		ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	566.9281616210938	3	566.924931	1697.75296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.79	1	23.79	23.29	24.29	0								0	0	0	0.45674	1	7925	7925		6.3209	6.3209	1				49582	7172	32714	32855	50215	50215					-0.06800257964073353
WNFVMIKK	8	Unmodified	_WNFVMIKK_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.3009643554688	2	533.29933	1064.58411	2.3236	0.0012392	0.70709	0.00037709	3.0306	0.0016162	533.2997075664997	20.347	0.25193	20.347	20.241	20.493	0					9	5	3	0	0	0	0.52345	1	6309	6309		57.811	7.7867	1	1852100			49583	6532	32715	32856	50216	50216					0.05439885193095506
WNGDMKTL	8	Unmodified	_WNGDMKTL_					0	0	0			REV__ENSG00000162909|ENST00000295006|CAPN2	REV__ENSG00000162909|ENST00000295006|CAPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.2342224121094	2	482.731477	963.448402	-0.5073	-0.00024489	2.436	0.0011759	1.9287	0.00093102	482.7326636582165	18.937	0.11912	18.937	18.846	18.965	0					5	3	2	0	0	0	0.46013	1	5030	5030		64.207	2.516	1	66596	+		49584	15846	32716	32857	50217	50217					-0.0347843438835298
WNGGSRRPSI	10	Unmodified	_WNGGSRRPSI_					0	0	0			REV__ENST00000395270.5_1_7:72361184-72361244:+|nuORF	REV__ENST00000395270.5_1_7:72361184-72361244:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	565.2968139648438	2	565.296696	1128.57884	1.7735	0.0010026	-1.6022	-0.0009057	0.17139	9.6884E-05	565.2957356529924	26.889	0.29202	26.889	26.805	27.097	0					19	7	4	0	0	0	0.073977	1	9326	9326		101.25	18.422	1	1319800	+		49585	18874	32717	32858	50218	50218					0.019692976548412844
WNGGSRRPSI	10	Unmodified	_WNGGSRRPSI_					0	0	0			REV__ENST00000395270.5_1_7:72361184-72361244:+|nuORF	REV__ENST00000395270.5_1_7:72361184-72361244:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	565.2955932617188	2	565.296696	1128.57884	0.81882	0.00046288	-2.4295	-0.0013734	-1.6107	-0.00091052	565.2952208904481	26.719	0.2756	26.719	26.639	26.914	0					13	6	3	0	0	0	0.44601	1	8644	8644		51.193	3.5354	1	423880	+		49586	18874	32717	32858	50219	50219					0.019692976548412844
WNIITGNK	8	Unmodified	_WNIITGNK_					0	0	0		nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	nc|ENSG00000120868|O14727-5|APAF1	nc|ENSG00000120868|O14727-5|APAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	473.2593688964844	2	473.261259	944.507966	-0.64961	-0.00030743	-1.0951	-0.00051826	-1.7447	-0.0008257	473.26081193084946	14.722	0.2646	14.722	14.613	14.878	0					10	5	3	0	0	0	0.63077	1	3893	3893		44.117	1.7207	1	245930			49587	180	32718	32859	50220	50220					0.03349204617336454
WNLTPHLCRPG	11	Unmodified	_WNLTPHLCRPG_					0	0	0		ENST00000610085.1_1_7:148395177-148395648:-|nuORF	ENST00000610085.1_1_7:148395177-148395648:-|nuORF	ENST00000610085.1_1_7:148395177-148395648:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	647.3312377929688	2	647.329682	1292.64481	1.99	0.0012882	-0.1701	-0.00011011	1.8199	0.0011781	647.3295822687779	22.802	0.46082	22.802	22.6	23.061	0					30	9	5	0	0	0	0.20102	1	7757	7757		74.165	1.2858	1	4278400			49588	11104	32719	32860	50221	50221					0.010193705053779922
WNLYHYYKQFF	11	Unmodified	_WNLYHYYKQFF_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	804.885009765625	2	804.885344	1607.75613	1.4097	0.0011347	-3.1215	-0.0025125	-1.7118	-0.0013778	804.8836231291051	25.668	0.18151	25.668	25.579	25.76	0					7	5	2	0	0	0	0.80089	1	8013	8013		14.865	4.5996	1	69243			49589	2718	32720	32861	50222	50222					-0.023432915857029002
WNLYHYYKQFF	11	Unmodified	_WNLYHYYKQFF_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	805.386962890625	2	804.885344	1607.75613	-1.6554	-0.0013324	1.0719	0.00086276	-0.58353	-0.00046967	805.3877064734638	25.893	0.29643	25.893	25.721	26.017	0					13	4	4	0	0	0	0.80089	1	9221	9221		14.865	5.682	1	415790			49590	2718	32720	32861	50223	50223					-0.023432915857029002
WNSSTLEQRAN	11	Unmodified	_WNSSTLEQRAN_					0	0	0		RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant;RBM44|p.I38Nfs*44|1|0.32|ENSG00000177483|chr2:237821162-237821163|-/A|frameshift_variant;RBM44|p.N125Mfs*4|1|0.07|ENSG00000177483|chr2:237823503-237823503|A/-|frameshift_variant;ENSG00000177483|ENST00000316997|RBM44	RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant	RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	653.31396484375	2	653.31274	1304.61093	0.083667	5.4661E-05	2.4036	0.0015703	2.4872	0.0016249	653.314109216995	35.38	0.3503	35.38	35.181	35.531	0					19	9	3	0	0	0	0.77123	1	13252	13252		20.837	1.7336	1	422300			49591	12010	32721	32862	50224	50224					-0.029193794526463535
WNTGVLMF	8	Unmodified	_WNTGVLMF_					0	0	0		nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.23956298828125	2	484.238938	966.463324	0.66758	0.00032327	1.0236	0.00049568	1.6912	0.00081895	484.23946347849056	42.62	0.1843	42.62	42.501	42.685	0					22	9	3	0	0	0	0.6282	1	16704	16704		44.531	0	1	166740			49592	3173	32722	32863	50225	50225					-0.021249425203563987
WNYLKGIL	8	Unmodified	_WNYLKGIL_					0	0	0		ENST00000530657.1_1_11:85906626-85907241:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.788330078125	2	503.789653	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.013	1	20.013	19.513	20.513	0								0	0	0	1.7419	1	5284	5284		42.474	9.662	1				49593	6100	32723	32864	50226	50226					0.06219252173866607
WPADENGPY	9	Unmodified	_WPADENGPY_					0	0	0		ENST00000565460.1_1_16:68289553-68293557:+|nuORF	ENST00000565460.1_1_16:68289553-68293557:+|nuORF	ENST00000565460.1_1_16:68289553-68293557:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7224731445312	2	524.722164	1047.42977	0.10592	5.5578E-05	-0.27289	-0.00014319	-0.16698	-8.7616E-05	524.7220401374244	13.501	0.18485	13.501	13.406	13.591	0					12	4	4	0	0	0	0.61124	1	3289	3289		17.365	0	1	1477400			49594	10751	32724	32865	50227	50227					-0.09204272758574916
WPAGLSAGSVA	11	Unmodified	_WPAGLSAGSVA_					0	0	0			REV__ENST00000381031.7_1_22:46689034-46689478:+|nuORF	REV__ENST00000381031.7_1_22:46689034-46689478:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.2641906738281	2	508.263999	1014.51345	1.3156	0.00066869	-1.4997	-0.00076224	-0.18405	-9.3544E-05	508.26329811124657	41.065	0.22536	41.065	40.972	41.198	0					14	5	3	0	0	0	0.38061	1	16319	16319		62.107	0	1	247190	+		49595	18776	32725	32866	50228	50228					0.006768834091303688
WPCQRTRLG	9	Unmodified	_WPCQRTRLG_					0	0	0			REV__ENST00000382141.4_1_13:24796978-24797068:+|nuORF	REV__ENST00000382141.4_1_13:24796978-24797068:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	372.86212158203125	3	372.862554	1115.56583	-1.0492	-0.00039119	-0.4887	-0.00018222	-1.5379	-0.00057341	372.86248134518945	18.392	0.19463	18.392	18.308	18.503	0					14	7	3	0	0	0	0.54267	1	4797	4797		27.882	3.3631	1	168760	+		49596	18791	32726	32867	50229	50229					0.012671432710931185
WPCQRTRLG	9	Unmodified	_WPCQRTRLG_					0	0	0			REV__ENST00000382141.4_1_13:24796978-24797068:+|nuORF	REV__ENST00000382141.4_1_13:24796978-24797068:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	373.1963806152344	3	372.862554	1115.56583	-2.1066	-0.00078547	0.7836	0.00029217	-1.323	-0.0004933	373.1972585307942	18.435	0.11472	18.435	18.398	18.512	0					5	3	2	0	0	0	0.4966	1	4817	4817		32.812	8.2932	1	84107	+		49597	18791	32726	32867	50230	50230					0.012671432710931185
WPEETGMW	8	Unmodified	_WPEETGMW_					0	0	0			REV__POLRMT|p.A888T|1|0.38|ENSG00000099821|chr19:620466-620466|C/T|missense_variant	REV__POLRMT|p.A888T|1|0.38|ENSG00000099821|chr19:620466-620466|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.219970703125	2	518.21566	1034.41677	4.7922	0.0024834	1.4445	0.00074855	6.2367	0.0032319	518.2171178602651	24.355	0.19709	24.355	24.258	24.455	0					12	6	3	0	0	0	0.68754	1	7440	7440		35.201	0	1	141050	+		49598	21397	32727	32868	50231	50231					-0.09906427142300345
WPEISSSH	8	Unmodified	_WPEISSSH_					0	0	0		ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENST00000431339.1_1_X:73326627-73327404:+|nuORF	ENST00000431339.1_1_X:73326627-73327404:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.71875	2	471.719424	941.424296	-1.4036	-0.0006621	0.22974	0.00010837	-1.1738	-0.00055373	471.71958374897974	24.841	0.29587	24.841	24.677	24.973	0					20	10	3	0	0	0	0.70055	1	7642	7642		33.516	33.516	1	187440			49599	4802	32728	32869	50232	50232					-0.04875951550366153
WPGCRLIE	8	Unmodified	_WPGCRLIE_					0	0	0			REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	487.25042724609375	2	487.249837	972.485122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.369	1	17.369	16.869	17.869	0								0	0	0	1.7419	1	4129	4129		44.531	0.15388	1		+		49600	14715	32729	32870	50233	50233					-0.0022213777181150363
WPGGPPLLVA	10	Unmodified	_WPGGPPLLVA_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.7874450683594	2	503.789653	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.644	1	22.644	22.144	23.144	0								0	0	0	0.37129	1	6434	6434		35.201	8.4046	1		+		49601	14406	32730	32871	50234	50234					0.0621925217384387
WPGGPPLLVA	10	Unmodified	_WPGGPPLLVA_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.78765869140625	2	503.789653	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.996	1	21.996	21.496	22.496	0								0	0	0	0.32041	1	6405	6405		44.531	17.735	1		+		49602	14406	32730	32871	50235	50235					0.0621925217384387
WPGGPPLLVA	10	Unmodified	_WPGGPPLLVA_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.19415283203125	3	336.195527	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.824	1	20.824	20.324	21.324	0								0	0	0	0.39665	1	5881	5881		31.53	8.0071	1		+		49603	14406	32730	32871	50236	50236					0.0621925217384387
WPGGPPLLVA	10	Unmodified	_WPGGPPLLVA_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.1939697265625	3	336.195527	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.234	1	22.234	21.734	22.734	0								0	0	0	0.41967	1	6512	6512		24.519	0	1		+		49604	14406	32730	32871	50237	50237					0.0621925217384387
WPGGPPLLVA	10	Unmodified	_WPGGPPLLVA_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.787353515625	2	503.789653	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.412	1	20.412	19.912	20.912	0								0	0	0	0.32041	1	5734	5734		35.201	0	1		+		49605	14406	32730	32871	50238	50238					0.0621925217384387
WPGGPPLLVA	10	Unmodified	_WPGGPPLLVA_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.7874450683594	2	503.789653	1005.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.051	1	22.051	21.551	22.551	0								0	0	0	0.37129	1	6503	6503		26.796	0	1		+		49606	14406	32730	32871	50239	50239					0.0621925217384387
WPGLSDPE	8	Unmodified	_WPGLSDPE_					0	0	0			REV__ENST00000360864.8_1_20:62563873-62564050:+|nuORF	REV__ENST00000360864.8_1_20:62563873-62564050:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.707763671875	2	450.708525	899.402498	-0.48902	-0.00022041	0.1882	8.4825E-05	-0.30082	-0.00013558	450.70767704931353	38.339	0.29875	38.339	38.258	38.557	0					19	10	2	0	0	0	0.74117	1	14545	14545		28.254	0	1	382580	+		49607	18559	32731	32872	50240	50240					-0.051227562989538455
WPGRGTRK	8	Unmodified	_WPGRGTRK_					0	0	0		ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.2716064453125	2	479.272493	956.530432	-2.9273	-0.001403	0.81171	0.00038903	-2.1156	-0.0010139	479.2728072363495	22.462	0.28799	22.462	22.362	22.65	0					16	6	4	0	0	0	0.37144	1	6682	6682		74.255	74.255	1	1512700			49608	9533	32732	32873	50241	50241					0.05042848805612721
WPGVPYWW	8	Unmodified	_WPGVPYWW_					0	0	0		ENSG00000182378|ENST00000381657|PLCXD1	ENSG00000182378|ENST00000381657|PLCXD1	ENSG00000182378|ENST00000381657|PLCXD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.760498046875	2	545.760895	1089.50724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.099	1	19.099	18.599	19.599	0								0	0	0	1.7419	1	5120	5120		33.493	8.0428	1				49609	6893	32733	32874	50242	50242					-0.03393590031760141
WPHLTEGII	9	Unmodified	_WPHLTEGII_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	533.7772827148438	2	533.290017	1064.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.387	1	35.387	34.887	35.887	0								0	0	0	0.27025	1	11971	11971		25.45	8.0852	1				49610	2939	32734	32875	50243	50243					0.03578046822894976
WPICFLKK	8	Unmodified	_WPICFLKK_					0	0	0			REV__IRF5|p.E134*|1|0.33|ENSG00000128604|chr7:128946508-128946509|-/C|frameshift_variant	REV__IRF5|p.E134*|1|0.33|ENSG00000128604|chr7:128946508-128946509|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	517.7957763671875	2	517.796423	1033.57829	-1.4338	-0.0007424	0.75182	0.00038929	-0.68195	-0.00035311	517.7967419206532	13.874	0.12504	13.874	13.828	13.953	0					13	6	3	0	0	0	0.63077	1	2840	2840		33.516	33.516	1	451330	+		49611	14520	32735	32876	50244	50244					0.06284786681430887
WPLFHSVR	8	Unmodified	_WPLFHSVR_					0	0	0			REV__nc|ENSG00000122861|P00749-2|PLAU	REV__nc|ENSG00000122861|P00749-2|PLAU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.2857055664062	2	521.285069	1040.55558	-0.15808	-8.2404E-05	1.0733	0.00055949	0.91521	0.00047709	521.2857039189286	11.19	0.096918	11.19	11.15	11.247	0					7	3	3	0	0	0	0.79719	1	2243	2243		18.324	3.4595	1	751080	+		49612	14345	32736	32877	50245	50245					0.03692903608157394
WPLLHYLY	8	Unmodified	_WPLLHYLY_					0	0	0			REV__tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	REV__tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	552.7998046875	2	552.797478	1103.5804	1.5922	0.00088016	3.7304	0.0020622	5.3226	0.0029423	552.7994359589862	42.153	0.14908	42.153	42.091	42.24	0					12	7	2	0	0	0	0.70073	1	16558	16558		33.493	15.169	1	102670	+		49613	22186	32737	32878	50246	50246					0.03275538690877511
WPLNYGRSAH	10	Unmodified	_WPLNYGRSAH_					0	0	0		ENST00000520757.1_1_8:96047742-96087920:+|nuORF	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	600.7987670898438	2	600.799072	1199.58359	-1.871	-0.0011241	1.1603	0.00069709	-0.71075	-0.00042702	600.799720011442	25.489	0.12498	25.489	25.414	25.539	0					5	3	2	0	0	0	0.69558	1	8128	8128		30.318	6.795	1	62614			49614	10304	32738	32879	50247	50247					-0.008218182023938425
WPPWSRMT	8	Oxidation (M)	_WPPWSRM(Oxidation (M))T_		WPPWSRM(1)T		WPPWSRM(48)T	0	0	1		TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant	TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant	TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.7543334960938	2	538.752744	1075.49094	2.0202	0.0010884	0.87914	0.00047364	2.8993	0.001562	538.7532510588502	17.582	0.090916	17.582	17.539	17.63	0					6	2	3	0	0	0	0.60719	1	5001	5001		47.916	47.916	1	887070			49615	22543	32739	32880	50248	50248		815			-0.043790392601295025
WPQPLLHQI	9	Unmodified	_WPQPLLHQI_					0	0	0			REV__ENSG00000105088|ENST00000264833|OLFM2	REV__ENSG00000105088|ENST00000264833|OLFM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	377.8807678222656	3	377.881831	1130.62366	0.61019	0.00023058	-3.3767	-0.001276	-2.7665	-0.0010454	377.88074410326954	23.504	0.41782	23.504	23.344	23.762	0					24	8	4	0	0	0	0.45358	1	8119	8119		36.447	0	1	1681800	+		49616	13752	32740	32881	50249	50249					0.06357728468174173
WPRGLRPP	8	Unmodified	_WPRGLRPP_					0	0	0		ENST00000570495.5_1_16:68573279-68591907:+|nuORF;ENST00000573685.5_1_16:68573279-68591907:+|nuORF;ENST00000562156.5_1_16:68573203-68591907:+|nuORF	ENST00000570495.5_1_16:68573279-68591907:+|nuORF	ENST00000570495.5_1_16:68573279-68591907:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.78497314453125	2	489.785236	977.555919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.325	1	27.325	26.825	27.825	0								0	0	0	1.7419	1	8924	8924		50.025	0	1				49617	10717	32741	32882	50250	50250					0.06624323328026094
WPRRLRRASS	10	Unmodified	_WPRRLRRASS_					0	0	0		ENST00000489456.1_1_2:220434036-220439523:+|nuORF;INHA|p.G66Afs*61|1|0.29|ENSG00000123999|chr2:219572566-219572566|G/-|frameshift_variant	ENST00000489456.1_1_2:220434036-220439523:+|nuORF	ENST00000489456.1_1_2:220434036-220439523:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	428.9185791015625	3	428.91805	1283.73232	0.94789	0.00040657	0.60837	0.00026094	1.5563	0.00066751	428.91826461184024	24.155	0.61329	24.155	23.898	24.511	0					34	12	4	0	0	0	0.66699	1	8456	8456		26.063	26.063	1	1823800			49618	10057	32742	32883	50251	50251					0.10180332491177069
WPSIWYST	8	Unmodified	_WPSIWYST_					0	0	0		ENST00000392723.5_2_1:151379095-151379711:-|nuORF	ENST00000392723.5_2_1:151379095-151379711:-|nuORF	ENST00000392723.5_2_1:151379095-151379711:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.2477416992188	2	520.247818	1038.48108	0.067324	3.5025E-05	0.19531	0.00010161	0.26264	0.00013664	520.2474294281612	29.566	0.85475	29.566	28.918	29.773	0					27	21	2	0	0	0	0.6282	1	10583	10583		44.531	2.0566	1	423990			49619	9147	32743	32884	50252	50252					-0.03661903993861415
WPSWLVTY	8	Unmodified	_WPSWLVTY_					0	0	0			REV__ENST00000322723.8_1_2:232319762-232319831:-|nuORF	REV__ENST00000322723.8_1_2:232319762-232319831:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2692260742188	2	526.26601	1050.51747	3.4604	0.0018211	1.8109	0.000953	5.2713	0.0027741	526.2667034455111	26.026	0.90271	26.026	25.684	26.587	0					40	16	5	0	0	0	0.29152	1	9153	9153		74.517	0.26156	1	2421000	+		49620	18339	32744	32885	50253	50253					-0.005770270971424907
WPTAPPSSL	9	Unmodified	_WPTAPPSSL_					0	0	0			REV__ENST00000414620.1_1_7:5580365-5602392:-|nuORF	REV__ENST00000414620.1_1_7:5580365-5602392:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.24578857421875	2	478.247818	954.481082	-2.9024	-0.0013881	-1.786	-0.00085415	-4.6884	-0.0022422	478.24695518712025	27.611	0.34339	27.611	27.443	27.786	0					13	8	2	0	0	0	0.47038	1	9048	9048		35.618	0	1	98011	+		49621	19021	32745	32886	50254	50254					0.0020209600613725343
WPTKAGGA	8	Unmodified	_WPTKAGGA_					0	0	0			REV__NAV1|p.L161Wfs*33|2|0.23|ENSG00000134369|chr1:201649144-201649144|C/-|frameshift_variant	REV__NAV1|p.L161Wfs*33|2|0.23|ENSG00000134369|chr1:201649144-201649144|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.2103271484375	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.45	1	22.45	21.95	22.95	0								0	0	0	1.7419	1	6349	6349		33.516	6.7195	1		+		49622	20917	32746	32887	50255	50255					0.0006928849170435569
WPTRTMPPRSH	11	Unmodified	_WPTRTMPPRSH_					0	0	0		ENST00000538966.5_1_X:153029661-153030983:+|nuORF	ENST00000538966.5_1_X:153029661-153030983:+|nuORF	ENST00000538966.5_1_X:153029661-153030983:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	683.34716796875	2	683.345863	1364.67717	0.24381	0.00016661	3.4191	0.0023364	3.6629	0.002503	683.8490201600961	39.741	0.12721	39.741	39.69	39.817	0					14	7	3	0	0	0	0.42746	1	12885	12885		49.536	9.4779	1	110340			49623	10518	32747	32888	50256	50256					0.009421579083891629
WPVFDGAK	8	Unmodified	_WPVFDGAK_					0	0	0			REV__SETMAR|p.F116Lfs*58|1|0.35|ENSG00000170364|chr3:4313085-4313085|T/-|frameshift_variant	REV__SETMAR|p.F116Lfs*58|1|0.35|ENSG00000170364|chr3:4313085-4313085|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	460.23583984375	2	460.237253	918.459953	-0.15358	-7.0682E-05	-2.6744	-0.0012308	-2.828	-0.0013015	460.2357746136542	26.675	0.16741	26.675	26.577	26.744	0					5	3	2	0	0	0	0.67394	1	9593	9593		37.159	1.5408	1	39801	+		49624	21507	32748	32889	50257	50257					-0.002538693027190675
WPVQKERIGA	10	Unmodified	_WPVQKERIGA_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	395.2228088378906	3	395.224257	1182.65094	-0.65012	-0.00025695	-2.8755	-0.0011365	-3.5256	-0.0013934	395.2231839710626	16.755	0.46103	16.755	16.697	17.158	0					20	9	4	0	0	0	0.22691	1	4714	4714		76.17	7.3235	1	4345300			49625	5686	32749	32890	50258	50258					0.06692212008556453
WQDPHSWNS	9	Unmodified	_WQDPHSWNS_					0	0	0		ENST00000507256.1_1_1:154407503-154427053:+|nuORF;nc|ENSG00000160712|P08887-2|IL6R;ENSG00000160712|ENST00000368485|IL6R	ENST00000507256.1_1_1:154407503-154427053:+|nuORF	ENST00000507256.1_1_1:154407503-154427053:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.7470703125	2	578.743962	1155.47337	3.2589	0.0018861	2.2615	0.0013088	5.5204	0.0031949	578.7452108113453	16.474	0.26686	16.474	16.367	16.634	0					10	5	3	0	0	0	0.1115	1	4580	4580		76.774	14.667	1	935600			49626	5379	32750	32891	50259	50259					-0.09814663261431633
WQGQYLIWA	9	Unmodified	_WQGQYLIWA_					0	0	0			REV__INPPL1|p.P976Hfs*155|1|0.31|ENSG00000165458|chr11:72237165-72237165|C/-|frameshift_variant	REV__INPPL1|p.P976Hfs*155|1|0.31|ENSG00000165458|chr11:72237165-72237165|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	582.7974853515625	2	582.795466	1163.57638	-0.0052608	-3.066E-06	3.5128	0.0020473	3.5076	0.0020442	582.798134255985	36.938	0.1504	36.938	36.854	37.004	0					7	4	2	0	0	0	0.50461	1	13978	13978		31.955	1.4512	1	46101	+		49627	20764	32751	32892	50260	50260					0.0011344919719249447
WQKDSYIA	8	Unmodified	_WQKDSYIA_					0	0	0		PTPRA|p.R598W|1|0.3|ENSG00000132670|chr20:3027713-3027713|C/T|missense_variant	PTPRA|p.R598W|1|0.3|ENSG00000132670|chr20:3027713-3027713|C/T|missense_variant	PTPRA|p.R598W|1|0.3|ENSG00000132670|chr20:3027713-3027713|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.75299072265625	2	505.750724	1009.4869	-0.28264	-0.00014294	2.6841	0.0013575	2.4014	0.0012145	505.7520086764478	30.688	0.26876	30.688	30.529	30.797	0					10	5	3	0	0	0	0.75243	1	11427	11427		26.796	1.222	1	222390			49628	11985	32752	32893	50261	50261					-0.01746805482207492
WQNELQVY	8	Unmodified	_WQNELQVY_					0	0	0			REV__ENSG00000173275|ENST00000339249|ZNF449	REV__ENSG00000173275|ENST00000339249|ZNF449	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.26416015625	2	540.261456	1078.50836	0.66389	0.00035867	2.8348	0.0015315	3.4987	0.0018902	540.2632537136583	36.57	0.4669	36.57	36.379	36.846	0					20	9	4	0	0	0	0.65276	1	14222	14222		40.573	0	1	241920	+		49629	16503	32753	32894	50262	50262					-0.027754204534858218
WQVPKEADDT	10	Unmodified	_WQVPKEADDT_					0	0	0		ENST00000557314.5_1_14:20839728-20850189:-|nuORF;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	ENST00000557314.5_1_14:20839728-20850189:-|nuORF;nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.7798461914062	2	594.78021	1187.54587	-0.54998	-0.00032712	1.025	0.00060967	0.47506	0.00028256	594.7808616070146	24.588	0.24095	24.588	24.498	24.739	0					17	8	3	0	0	0	0.72365	1	7605	7605		18.262	2.6203	1	328540			49630	3603;10672	32754	32895	50263	50263					-0.04040373978523348
WRAPRGQAPV	10	Unmodified	_WRAPRGQAPV_					0	0	0			REV__ENST00000568394.1_1_16:1030490-1030955:-|nuORF	REV__ENST00000568394.1_1_16:1030490-1030955:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.3182373046875	2	569.317432	1136.62031	0.086648	4.933E-05	-0.37539	-0.00021371	-0.28874	-0.00016438	569.3171328594991	39.722	0.14382	39.722	39.627	39.771	0					10	6	2	0	0	0	0.58896	1	15125	15125		35.618	0	1	66827	+		49631	20359	32755	32896	50264	50264					0.05746478414152989
WRAQLPLP	8	Unmodified	_WRAQLPLP_					0	0	0		ENST00000483563.5_1_9:140500169-140508085:+|nuORF	ENST00000483563.5_1_9:140500169-140508085:+|nuORF	ENST00000483563.5_1_9:140500169-140508085:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.78839111328125	2	490.787444	979.560336	-0.49751	-0.00024417	0.20681	0.0001015	-0.2907	-0.00014267	490.78753230095805	45.766	0.26021	45.766	45.635	45.896	0					25	15	2	0	0	0	0.79176	1	16977	16977		21.702	2.3424	1	53568			49632	9983	32756	32897	50265	50265					0.06973787750928295
WRAVIQVRQ	9	Unmodified	_WRAVIQVRQ_					0	0	0		ENST00000439704.1_1_7:63369621-63370485:-|nuORF	ENST00000439704.1_1_7:63369621-63370485:-|nuORF	ENST00000439704.1_1_7:63369621-63370485:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	385.8953857421875	3	385.896363	1154.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.767	1	30.767	30.267	31.267	0								0	0	0	0.36609	1	10136	10136		20.947	3.4789	1				49633	9567	32757	32898	50266	50266					0.09611337965316125
WRGGWPAQ	8	Unmodified	_WRGGWPAQ_					0	0	0			REV__ENST00000485102.1_1_X:48673225-48673405:+|nuORF	REV__ENST00000485102.1_1_X:48673225-48673405:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.2376708984375	2	479.238119	956.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.105	1	46.105	45.605	46.605	0								0	0	0	1.7419	1	18456	18456		35.201	1.0282	1		+		49634	19647	32758	32899	50267	50267					-0.01828815494116043
WRGMVVVK	8	Unmodified	_WRGMVVVK_					0	0	0			REV__ENST00000355832.9_2_10:50740763-50741003:-|nuORF	REV__ENST00000355832.9_2_10:50740763-50741003:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	487.7850341796875	2	487.783847	973.553142	3.5061	0.0017102	-1.2018	-0.0005862	2.3043	0.001124	487.78319084357844	15.613	0.095115	15.613	15.566	15.661	0					9	4	3	0	0	0	0.49216	1	3593	3593		50.025	9.2464	1	275000	+		49635	18512	32759	32900	50268	50268					0.06530731878865481
WRGNMQSL	8	Unmodified	_WRGNMQSL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.7437744140625	2	496.242544	990.470534	-0.76791	-0.00038107	0.17512	8.6902E-05	-0.59279	-0.00029417	496.24120227061536	11.073	0.14684	11.073	10.979	11.126	0					8	5	2	0	0	0	0.78751	1	2184	2184		12.207	0.69583	1	61208	+		49636	14609	32760	32901	50269	50269					-0.025082099199380536
WRGRLHPR	8	Unmodified	_WRGRLHPR_					0	0	0		ENST00000359518.7_1_11:6486953-6494439:-|nuORF	ENST00000359518.7_1_11:6486953-6494439:-|nuORF	ENST00000359518.7_1_11:6486953-6494439:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	539.8145141601562	2	539.312484	1076.61041	-0.13514	-7.2882E-05	0.94085	0.00050741	0.80571	0.00043453	539.3127964829999	17.459	0.11011	17.459	17.365	17.475	0					6	4	2	0	0	0	0.68432	1	4380	4380		25.45	15.185	1	40037			49637	8849	32761	32902	50270	50270					0.07517335199440822
WRGTKLVLE	9	Unmodified	_WRGTKLVLE_					0	0	0			REV__ENST00000381222.8_2_X:2405587-2405806:-|nuORF	REV__ENST00000381222.8_2_X:2405587-2405806:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.3232421875	2	551.324391	1100.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.519	1	18.519	18.019	19.019	0								0	0	0	0.16453	1	4851	4851		40.778	0	1		+		49638	18782	32762	32903	50271	50271					0.08793711122621062
WRICPALAV	9	Unmodified	_WRICPALAV_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF;ALDH16A1|p.A347Gfs*5|1|0.36|ENSG00000161618|chr19:49462690-49462691|-/G|frameshift_variant;ALDH16A1|p.F409Sfs*93|1|0.42|ENSG00000161618|chr19:49464152-49464152|C/-|frameshift_variant;ALDH16A1|p.A347Lfs*155|1|0.37|ENSG00000161618|chr19:49462691-49462691|G/-|frameshift_variant;ALDH16A1|p.Y528Mfs*99|1|0.33|ENSG00000161618|chr19:49465745-49465745|C/-|frameshift_variant;nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	514.7904663085938	2	514.78913	1027.56371	0.024676	1.2703E-05	2.2822	0.0011749	2.3069	0.0011876	514.7901889835691	33.254	0.31525	33.254	33.141	33.456	0					12	8	3	0	0	0	0.43426	1	12287	12287		38.806	0.99462	1	251570			49639	111	32763	32904	50272	50272					0.05102714533290964
WRLLGAVRG	9	Unmodified	_WRLLGAVRG_					0	0	0		ENSG00000179399|ENST00000377067|GPC5;GPC5|p.D168*|2|0.41|ENSG00000179399|chr13:91693356-91693357|-/T|frameshift_variant	ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.3108520507812	2	514.311618	1026.60868	-1.6101	-0.00082811	0.90015	0.00046296	-0.70999	-0.00036515	514.3118402201267	35.421	0.24719	35.421	35.297	35.544	0					14	9	2	0	0	0	0.18605	1	12603	12603		63.306	1.5417	1	68215			49640	6764	32764	32905	50273	50273					0.0964428139084248
WRMEWEGGLY	10	Unmodified	_WRMEWEGGLY_					0	0	0		ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	663.7991333007812	2	663.800423	1325.58629	-2.0283	-0.0013464	0.74859	0.00049692	-1.2797	-0.00084949	663.8007959393874	28.406	0.20742	28.406	28.291	28.498	0					11	5	3	0	0	0	0.70877	1	10051	10051		20.947	0.10978	1	240690			49641	9507	32765	32906	50274	50274					-0.06347730859738476
WRNALVAG	8	Unmodified	_WRNALVAG_					0	0	0		ENSG00000180549|ENST00000314412|FUT7	ENSG00000180549|ENST00000314412|FUT7	ENSG00000180549|ENST00000314412|FUT7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	443.74786376953125	2	443.748319	885.482085	-1.1593	-0.00051443	0.68954	0.00030598	-0.46974	-0.00020845	443.74867563293043	20.061	0.37596	20.061	19.872	20.248	0					16	12	2	0	0	0	0.79176	1	5538	5538		21.702	1.2205	1	145790			49642	6809	32766	32907	50275	50275					0.034763551657079006
WRPRYRYYHWA	11	Unmodified	_WRPRYRYYHWA_					0	0	0		SLC12A6|p.F676Y|1|0.34|ENSG00000140199|chr15:34243989-34243989|A/T|missense_variant	SLC12A6|p.F676Y|1|0.34|ENSG00000140199|chr15:34243989-34243989|A/T|missense_variant	SLC12A6|p.F676Y|1|0.34|ENSG00000140199|chr15:34243989-34243989|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	827.4157104492188	2	827.412926	1652.8113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.514	1	37.514	37.014	38.014	0								0	0	0	0.45674	1	12683	12683		2.9294	0	1				49643	22400	32767	32908	50276	50276					0.011005597254552413
WRPRYRYYHWA	11	Unmodified	_WRPRYRYYHWA_					0	0	0		SLC12A6|p.F676Y|1|0.34|ENSG00000140199|chr15:34243989-34243989|A/T|missense_variant	SLC12A6|p.F676Y|1|0.34|ENSG00000140199|chr15:34243989-34243989|A/T|missense_variant	SLC12A6|p.F676Y|1|0.34|ENSG00000140199|chr15:34243989-34243989|A/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	827.4155883789062	2	827.412926	1652.8113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.99	1	41.99	41.49	42.49	0								0	0	0	0.45674	1	16499	16499		2.9294	0.211	1				49644	22400	32767	32908	50277	50277					0.011005597254552413
WRQGRLYY	8	Unmodified	_WRQGRLYY_					0	0	0			REV__ENSG00000206579|ENST00000327381|XKR4	REV__ENSG00000206579|ENST00000327381|XKR4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	571.299072265625	2	571.298707	1140.58286	0.041758	2.3856E-05	-0.28927	-0.00016526	-0.24751	-0.0001414	571.2985636935032	35.061	0.15526	35.061	34.947	35.102	0					7	4	2	0	0	0	0.61433	1	13551	13551		46.766	0.81448	1	63272	+		49645	17545	32768	32909	50278	50278					0.018193871485664204
WRRAHCTC	8	Unmodified	_WRRAHCTC_					0	0	0			REV__ENSG00000244486|ENST00000622235|SCARF2	REV__ENSG00000244486|ENST00000622235|SCARF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.316162109375	2	516.734363	1031.45417	0.32072	0.00016572	-3.4346	-0.0017748	-3.1139	-0.0016091	517.2350420070766	15.686	0.050892	15.686	15.66	15.71	0					4	2	2	0	0	0	0.76283	1	3460	3460		25.45	1.2474	1	30135	+		49646	17710	32769	32910	50279	50279					-0.06029614357680657
WRRGGGVGPK	10	Unmodified	_WRRGGGVGPK_					0	0	0			REV__ENST00000457837.5_2_7:107220804-107221062:+|nuORF	REV__ENST00000457837.5_2_7:107220804-107221062:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.8059692382812	2	535.304324	1068.5941	0.13678	7.3218E-05	-0.29844	-0.00015976	-0.16167	-8.654E-05	535.3042310675357	21.542	0.86444	21.542	21.304	22.168	0					58	26	3	0	0	0	0.71484	1	6122	6122		19.997	3.5236	1	356370	+		49647	19355	32770	32911	50280	50280					0.06254209242706565
WRRGLGAPRQ	10	Unmodified	_WRRGLGAPRQ_					0	0	0			REV__ENST00000496559.6_1_3:66430689-66456253:-|nuORF	REV__ENST00000496559.6_1_3:66430689-66456253:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	399.8975524902344	3	399.563496	1195.66866	0.59648	0.00023833	-1.6571	-0.00066213	-1.0607	-0.0004238	399.8969150385698	17.921	0.12967	17.921	17.841	17.971	0					6	3	2	0	0	0	0.70274	1	4368	4368		21.686	4.2177	1	96228	+		49648	19773	32771	32912	50281	50281					0.07864972054085229
WRRHRFQYQCE	11	Unmodified	_WRRHRFQYQCE_					0	0	0			REV__ENST00000497817.1_1_3:55513315-55514913:-|nuORF	REV__ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	804.8815307617188	2	804.883675	1607.7528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.63	1	25.63	25.13	26.13	0								0	0	0	0.45674	1	7731	7731		8.6937	3.4736	1		+		49649	14069	32772	32913	50282	50282					-0.026768649113364518
WRSARHGLK	9	Unmodified	_WRSARHGLK_					0	0	0		ENST00000476266.5_1_19:40748442-40748610:-|nuORF;ENST00000578975.1_1_19:40748439-40748610:-|nuORF	ENST00000476266.5_1_19:40748442-40748610:-|nuORF	ENST00000476266.5_1_19:40748442-40748610:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	370.8825988769531	3	370.880825	1109.62064	3.5578	0.0013195	1.3556	0.00050277	4.9134	0.0018223	370.8814268705222	21.466	0.33422	21.466	21.361	21.695	0					22	10	4	0	0	0	0.27249	1	6162	6162		52.937	4.9772	1	682570			49650	9906	32773	32914	50283	50283					0.07021898134007643
WRSCLKIQI	9	Carbamidomethyl (C)	_WRSC(Carbamidomethyl (C))LKIQI_	WRSC(1)LKIQI		WRSC(72)LKIQI		0	1	0			REV__ENST00000493587.1_1_8:100880383-100883116:+|nuORF	REV__ENST00000493587.1_1_8:100880383-100883116:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	602.33837890625	2	602.336975	1202.6594	2.0536	0.0012369	0.21694	0.00013067	2.2705	0.0013676	602.3370901753331	25.153	0.21983	25.153	25.044	25.264	0					11	4	3	0	0	0	0.13267	1	8783	8783		71.877	6.4121	1	1562400	+		49651	19740	32774	32915	50284	50284	697				0.06617442653509897
WRTSRLRIG	9	Unmodified	_WRTSRLRIG_					0	0	0			REV__ENST00000409291.5_1_15:44092113-44092284:+|nuORF	REV__ENST00000409291.5_1_15:44092113-44092284:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.227783203125	3	382.228113	1143.66251	0.20912	7.9931E-05	-2.1469	-0.00082059	-1.9377	-0.00074066	382.22749569395916	28.441	0.21707	28.441	28.331	28.548	0					6	4	2	0	0	0	0.46194	1	10435	10435		36.447	3.4074	1	76225	+		49652	18995	32775	32916	50285	50285					0.0964245382253921
WSACSKTCGMG	11	Unmodified	_WSACSKTCGMG_					0	0	0		nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2	nc|ENSG00000118523|P29279-2|CCN2	nc|ENSG00000118523|P29279-2|CCN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.7232055664062	2	565.725012	1129.43547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.657	1	33.657	33.157	34.157	0								0	0	0	0.45674	1	12899	12899		19.104	0.84144	1				49653	3078	32776	32917	50286	50286					-0.12406956834433913
WSAESFAA	8	Unmodified	_WSAESFAA_					0	0	0			REV__ENSG00000184502|ENST00000329402|GAST	REV__ENSG00000184502|ENST00000329402|GAST	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.6960144042969	2	434.695418	867.376283	0.35585	0.00015469	1.3982	0.00060779	1.7541	0.00076248	434.6960285716071	13.276	0.24716	13.276	13.129	13.376	0					12	5	3	0	0	0	0.78999	1	3182	3182		13.775	3.5906	1	422230	+		49654	16986	32777	32918	50287	50287					-0.06271025470437053
WSDQPGISY	9	Unmodified	_WSDQPGISY_					0	0	0			REV__ENST00000492667.5_1_10:102249405-102250104:-|nuORF	REV__ENST00000492667.5_1_10:102249405-102250104:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.73876953125	2	526.737814	1051.46108	1.628	0.00085755	-0.61734	-0.00032518	1.0107	0.00053238	526.7374610533924	40.399	0.29462	40.399	40.295	40.59	0					14	6	3	0	0	0	0.41113	1	16029	16029		40.778	5.5774	1	414510	+		49655	19731	32778	32919	50288	50288					-0.06259699724455459
WSFCKLKT	8	Unmodified	_WSFCKLKT_					0	0	0		ENST00000366647.8_1_1:231403469-231403520:+|nuORF	ENST00000366647.8_1_1:231403469-231403520:+|nuORF	ENST00000366647.8_1_1:231403469-231403520:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	506.7690734863281	2	506.767863	1011.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.291	1	23.291	22.791	23.791	0								0	0	0	1.7419	1	6719	6719		25.45	0	1				49656	8896	32779	32920	50289	50289					0.015873194050755046
WSFFEALV	8	Unmodified	_WSFFEALV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2;ENST00000543425.1_1_12:124075023-124081273:+|nuORF	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7430419921875	2	499.752736	997.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.863	1	32.863	32.363	33.363	0								0	0	0	1.7419	1	12429	12429		52.299	0	1				49657	1750	32780	32921	50290	50290					-0.007927159884843604
WSGQYVGGAE	10	Unmodified	_WSGQYVGGAE_					0	0	0		CON__Streptavidin	CON__Streptavidin	CON__Streptavidin	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2359008789062	2	527.235439	1052.45632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.933	1	12.933	12.433	13.433	0								0	0	0	0.4201	1	2553	2553		19.104	0	1			+	49658	676	32781	32922	50291	50291					-0.06780583867225687
WSGRAVRL	8	Unmodified	_WSGRAVRL_					0	0	0			REV__ENSG00000088766|ENST00000378863|CRLS1	REV__ENSG00000088766|ENST00000378863|CRLS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	472.779541015625	2	472.774868	943.535184	-0.5744	-0.00027156	0.057864	2.7357E-05	-0.51654	-0.00024421	472.7752767324733	28.518	0.417	28.518	28.409	28.826	0					14	8	3	0	0	0	0.59773	1	10471	10471		49.442	0	1	733660	+		49659	13394	32782	32923	50292	50292					0.06115732948353525
WSGYAVKGTL	10	Unmodified	_WSGYAVKGTL_					0	0	0			REV__SULT1B1|p.L192Cfs*6|2|0.23|ENSG00000173597|chr4:69733435-69733435|A/-|frameshift_variant	REV__SULT1B1|p.L192Cfs*6|2|0.23|ENSG00000173597|chr4:69733435-69733435|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	541.2852783203125	2	541.287474	1080.5604	-1.4838	-0.00080317	-0.54511	-0.00029506	-2.0289	-0.0010982	541.2873366188612	16.962	0.19699	16.962	16.834	17.031	0					15	5	4	0	0	0	0.56099	1	4105	4105		41.427	2.1738	1	328290	+		49660	16522	32783	32924	50293	50293					0.023337429602861448
WSIDLEEL	8	Unmodified	_WSIDLEEL_					0	0	0			REV__nc|ENSG00000114248|Q6UY01-3|LRRC31	REV__nc|ENSG00000114248|Q6UY01-3|LRRC31	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7484130859375	2	502.75039	1003.48623	-0.90216	-0.00045356	-2.1972	-0.0011047	-3.0994	-0.0015582	502.7491847891233	27.057	0.18169	27.057	26.99	27.171	0					12	6	3	0	0	0	0.59411	1	8593	8593		50.025	0.58299	1	130290	+		49661	14068	32784	32925	50294	50294					-0.015376449219047572
WSIEQFHK	8	Unmodified	_WSIEQFHK_					0	0	0			REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.7704467773438	2	537.771991	1073.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.559	1	13.559	13.059	14.059	0								0	0	0	1.7419	1	3112	3112		51.335	20.832	1		+		49662	15306	32785	32926	50295	50295					-0.004394103539425487
WSKDGKLTTR	10	Unmodified	_WSKDGKLTTR_					0	0	0			REV__nc|ENSG00000147394|O15231-4|ZNF185	REV__nc|ENSG00000147394|O15231-4|ZNF185	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	596.3289794921875	2	596.327662	1190.64077	0.13384	7.9813E-05	-0.21105	-0.00012585	-0.077205	-4.6039E-05	596.32755812555	35.307	0.27211	35.307	35.131	35.403	0					22	13	2	0	0	0	0.65895	1	11547	11547		27.047	0.3544	1	60790	+		49663	15346	32786	32927	50296	50296					0.053076042833026804
WSKFHEIVV	9	Unmodified	_WSKFHEIVV_					0	0	0			REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.8110961914062	2	572.811116	1143.60768	-1.4517	-0.00083156	1.1265	0.00064528	-0.32522	-0.00018629	572.8119270831305	27.861	0.29597	27.861	27.773	28.069	0					20	7	4	0	0	0	0.13519	1	9157	9157		71.296	10.324	1	1445200	+		49664	17138	32787	32928	50297	50297					0.041620222312758415
WSKWGKEN	8	Unmodified	_WSKWGKEN_					0	0	0			REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.7555541992188	2	517.756341	1033.49813	1.0041	0.00051986	-1.5125	-0.00078312	-0.50845	-0.00026326	517.7552068559274	17.413	0.24951	17.413	17.217	17.466	0					7	5	2	0	0	0	0.54629	1	5177	5177		55.504	0.72789	1	78949	+		49665	12729	32788	32929	50298	50298					-0.017279833880593287
WSLGITGI	8	Unmodified	_WSLGITGI_					0	0	0			REV__ENSG00000197496|ENST00000359271|SLC2A10	REV__ENSG00000197496|ENST00000359271|SLC2A10	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	423.7378234863281	2	423.739628	845.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.823	1	32.823	32.323	33.323	0								0	0	0	1.7419	1	11454	11454		35.201	1.6851	1		+		49666	17339	32789	32930	50299	50299					0.0357901484002241
WSLGNYLAV	9	Unmodified	_WSLGNYLAV_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.76708984375	2	511.768917	1021.52328	1.0317	0.00052801	-3.7155	-0.0019015	-2.6838	-0.0013735	511.7662840653439	26.209	0.42397	26.209	26.083	26.507	0					21	10	3	0	0	0	0.54267	1	9047	9047		27.882	1.1893	1	246760			49667	4378	32790	32931	50300	50300					0.013380714145000638
WSLYDAVLK	9	Unmodified	_WSLYDAVLK_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7998046875	2	547.797675	1093.5808	1.8772	0.0010283	0.49728	0.00027241	2.3744	0.0013007	547.7980197257291	43.595	0.64191	43.595	43.443	44.085	0					69	21	6	0	0	0	0.13519	1	17411	17411		71.296	7.9894	1	20957000			49668	4400	32791	32932	50301	50301					0.03774913620077314
WSNYKEQL	8	Unmodified	_WSNYKEQL_					0	0	0			REV__KIT|p.N511Kfs*17|1|0.06|ENSG00000157404|chr4:54726041-54726042|-/AG|frameshift_variant	REV__KIT|p.N511Kfs*17|1|0.06|ENSG00000157404|chr4:54726041-54726042|-/AG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2598266601562	2	534.261456	1066.50836	-0.52336	-0.00027961	-2.7037	-0.0014445	-3.227	-0.0017241	534.26020004645	25.385	0.13345	25.385	25.346	25.479	0					9	5	2	0	0	0	0.60692	1	7904	7904		37.812	3.8899	1	75031	+		49669	15656	32792	32933	50302	50302					-0.022234204534925084
WSPSHGAL	8	Unmodified	_WSPSHGAL_					0	0	0		ADAMTSL2|p.H950Tfs*?|1|0.45|ENSG00000197859|chr9:133574850-133574850|C/-|frameshift_variant	ADAMTSL2|p.H950Tfs*?|1|0.45|ENSG00000197859|chr9:133574850-133574850|C/-|frameshift_variant	ADAMTSL2|p.H950Tfs*?|1|0.45|ENSG00000197859|chr9:133574850-133574850|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.7115173339844	2	427.711402	853.408252	0.85901	0.00036741	-1.0866	-0.00046475	-0.22758	-9.7341E-05	427.71094781288883	35.741	0.27401	35.741	35.64	35.914	0					14	7	3	0	0	0	0.6282	1	13425	13425		44.531	7.5026	1	181670			49670	62	32793	32934	50303	50303					-0.024316129966223343
WSQCLQNFL	9	Unmodified	_WSQCLQNFL_					0	0	0		ENSG00000109046|ENST00000262394|WSB1;nc|ENSG00000109046|Q9Y6I7-3|WSB1	ENSG00000109046|ENST00000262394|WSB1	ENSG00000109046|ENST00000262394|WSB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.7722778320312	2	569.771134	1137.52771	1.7542	0.00099948	0.25485	0.0001452	2.009	0.0011447	569.7710020350773	14.497	0.21131	14.497	14.338	14.55	0					8	5	2	0	0	0	0.61124	1	3558	3558		15.642	0.77694	1	51576			49671	2561	32794	32935	50304	50304					-0.03554787434222817
WSQILMQKIF	10	Unmodified	_WSQILMQKIF_					0	0	0		ENST00000430767.8_1_17:75210398-75210464:+|nuORF	ENST00000430767.8_1_17:75210398-75210464:+|nuORF	ENST00000430767.8_1_17:75210398-75210464:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	431.9062805175781	3	431.905648	1292.69511	0.92659	0.0004002	0.61304	0.00026478	1.5396	0.00066498	431.90596156242697	32.866	0.21818	32.866	32.754	32.972	0					8	4	2	0	0	0	0.59277	1	12420	12420		35.152	4.5832	1	1072100			49672	9494	32795	32936	50305	50305					0.06047480110532888
WSRAARVL	8	Unmodified	_WSRAARVL_					0	0	0			REV__ENST00000485668.5_1_1:45278776-45279441:+|nuORF	REV__ENST00000485668.5_1_1:45278776-45279441:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.7823791503906	2	479.782693	957.550834	-2.9266	-0.0014041	0.63514	0.00030473	-2.2915	-0.0010994	479.7830818046009	35.633	0.42631	35.633	35.432	35.858	0					52	16	5	0	0	0	0.51384	1	12642	12642		58.782	58.782	1	911240	+		49673	17615	32796	32937	50306	50306					0.0703601946541994
WSRGAQHR	8	Unmodified	_WSRGAQHR_					0	0	0			REV__ENST00000222345.10_1_19:38698194-38698434:+|nuORF	REV__ENST00000222345.10_1_19:38698194-38698434:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.25634765625	2	499.257374	996.500195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.043	1	13.043	12.543	13.543	0								0	0	0	1.7419	1	2649	2649		19.36	0	1		+		49674	17892	32797	32938	50307	50307					0.0018049014041707778
WSSTWKTLS	9	Unmodified	_WSSTWKTLS_					0	0	0		ENST00000483260.5_1_1:110949739-110950286:-|nuORF	ENST00000483260.5_1_1:110949739-110950286:-|nuORF	ENST00000483260.5_1_1:110949739-110950286:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2771606445312	2	548.277106	1094.53966	1.867	0.0010236	-1.8418	-0.0010098	0.025157	1.3793E-05	548.2759267124848	42.299	0.13323	42.299	42.214	42.347	0					5	3	2	0	0	0	0.41113	1	16885	16885		40.778	2.9666	1	106880			49675	9976	32798	32939	50308	50308					-0.003828474193596776
WSTHLDRRPQ	10	Unmodified	_WSTHLDRRPQ_					0	0	0			REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	REV__CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	432.5580749511719	3	432.558299	1294.65307	0.73857	0.00031947	-1.0449	-0.00045197	-0.30631	-0.0001325	432.5580719476173	15.216	0.22848	15.216	15.068	15.297	0					7	5	2	0	0	0	0.70967	1	3910	3910		20.837	1.5745	1	89881	+		49676	12653	32799	32940	50309	50309					0.017526407463719806
WSTVALTI	8	Unmodified	_WSTVALTI_					0	0	0			REV__ENSG00000221970|ENST00000641044|OR2A1	REV__ENSG00000221970|ENST00000641044|OR2A1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	445.75128173828125	2	445.752736	889.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.293	1	14.293	13.793	14.793	0								0	0	0	1.7419	1	3000	3000		19.36	0	1		+		49677	17551	32800	32941	50310	50310					0.04175284011500935
WSVCRRALNK	10	Unmodified	_WSVCRRALNK_					0	0	0			REV__ENST00000373943.8_1_1:28146229-28148790:+|nuORF	REV__ENST00000373943.8_1_1:28146229-28148790:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	616.84033203125	2	616.837674	1231.66079	3.0416	0.0018762	0.82271	0.00050748	3.8643	0.0023837	616.8381341896551	36.752	0.70892	36.752	36.445	37.154	0					42	14	5	0	0	0	0.1998	1	14296	14296		77.318	77.318	1	14436000	+		49678	18689	32801	32942	50311	50311					0.05423076742295052
WSVLATPW	8	Unmodified	_WSVLATPW_					0	0	0		DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant	DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant	DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	480.25299072265625	2	480.252903	958.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.933	1	26.933	26.433	27.433	0								0	0	0	1.7419	1	8526	8526		33.516	1.5607	1				49679	797	32802	32943	50312	50312					0.010347037313863439
WTDEEMGANHL	11	Unmodified	_WTDEEMGANHL_					0	0	0			REV__ENST00000448255.5_2_2:156880993-156881110:-|nuORF	REV__ENST00000448255.5_2_2:156880993-156881110:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	651.775390625	2	651.774602	1301.53465	0.15799	0.00010297	0.80761	0.00052638	0.9656	0.00062935	651.775142648825	17.812	0.21845	17.812	17.724	17.942	0					13	5	3	0	0	0	0.75295	1	5103	5103		22.58	1.6327	1	1080400	+		49680	19294	32803	32944	50313	50313					-0.10405519344294589
WTDGVWFCSW	10	Unmodified	_WTDGVWFCSW_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	643.76806640625	2	643.768591	1285.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.567	1	16.567	16.067	17.067	0								0	0	0	0.4201	1	4003	4003		14.865	5.682	1		+		49681	17861	32804	32945	50314	50314					-0.10871091296849045
WTEPQVSLLA	10	Unmodified	_WTEPQVSLLA_					0	0	0			REV__ENST00000465521.1_1_2:74758074-74758257:+|nuORF	REV__ENST00000465521.1_1_2:74758074-74758257:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	572.3057861328125	2	572.305864	1142.59717	0.61694	0.00035308	-2.9274	-0.0016754	-2.3105	-0.0013223	572.3043748084003	33.085	0.38695	33.085	32.805	33.192	0					17	11	2	0	0	0	0.50881	1	11535	11535		44.377	2.9506	1	45403	+		49682	17992	32805	32946	50315	50315					0.03157994786215568
WTEQSQEF	8	Unmodified	_WTEQSQEF_					0	0	0		DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.F4486Lfs*7|2|0.23|ENSG00000039139|chr5:13701317-13701317|A/-|frameshift_variant;ENSG00000039139|ENST00000265104|DNAH5	DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant	DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7279052734375	2	527.727446	1053.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.402	1	11.402	10.902	11.902	0								0	0	0	1.7419	1	2324	2324		16.473	0	1				49683	817	32806	32947	50316	50316					-0.08424290104130705
WTETRGIQF	9	Unmodified	_WTETRGIQF_					0	0	0		CHST10|p.R229W|1|0.79|ENSG00000115526|chr2:100393631-100393631|G/A|missense_variant	CHST10|p.R229W|1|0.79|ENSG00000115526|chr2:100393631-100393631|G/A|missense_variant	CHST10|p.R229W|1|0.79|ENSG00000115526|chr2:100393631-100393631|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.7879638671875	2	569.288005	1136.56146	0.64264	0.00036585	-0.61685	-0.00035117	0.025792	1.4683E-05	569.2878612383997	26.183	0.62254	26.183	26.081	26.704	0					35	14	3	0	0	0	0.53083	1	8500	8500		29.15	29.15	1	887740			49684	539	32807	32948	50317	50317					-0.0013604267080609134
WTEVAVLVV	9	Unmodified	_WTEVAVLVV_					0	0	0			REV__nc|ENSG00000114948|O75077-2|ADAM23	REV__nc|ENSG00000114948|O75077-2|ADAM23	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.2987976074219	2	508.294768	1014.57498	-0.57219	-0.00029084	-0.089764	-4.5627E-05	-0.66195	-0.00033647	508.295712142236	19.424	0.31956	19.424	19.243	19.562	0					15	9	3	0	0	0	0.24095	1	5283	5283		40.573	3.4135	1	188560	+		49685	20983	32808	32949	50318	50318					0.06827815108431423
WTFDAYYD	8	Unmodified	_WTFDAYYD_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7196655273438	2	540.71909	1079.42363	-0.12642	-6.8359E-05	1.7219	0.00093108	1.5955	0.00086272	540.7201453985105	27.581	0.25048	27.581	27.485	27.735	0					14	8	2	0	0	0	0.8006	1	8794	8794		20.482	4.0087	1	142070			49686	4286	32809	32950	50319	50319					-0.11290790990096866
WTGNVKCV	8	Unmodified	_WTGNVKCV_					0	0	0			REV__nc|ENSG00000172236|Q15661-2|TPSAB1	REV__nc|ENSG00000172236|Q15661-2|TPSAB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.72955322265625	2	453.728738	905.442923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.654	1	17.654	17.154	18.154	0								0	0	0	1.7419	1	4252	4252		26.796	1.3459	1		+		49687	16454	32810	32951	50320	50320					-0.01358113180174314
WTGSVYGDGQ	10	Unmodified	_WTGSVYGDGQ_					0	0	0		OTOR|p.A83T|1|0.28|ENSG00000125879|chr20:16748998-16748998|G/A|missense_variant	OTOR|p.A83T|1|0.28|ENSG00000125879|chr20:16748998-16748998|G/A|missense_variant	OTOR|p.A83T|1|0.28|ENSG00000125879|chr20:16748998-16748998|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	535.231201171875	2	535.232896	1068.45124	-1.3598	-0.0007278	-0.7405	-0.00039634	-2.1003	-0.0011241	535.2323855841565	15.562	0.32935	15.562	15.464	15.794	0					23	12	4	0	0	0	0.46215	1	3508	3508		49.442	0	1	324930			49688	11890	32811	32952	50321	50321					-0.08024887729857255
WTHRPRNP	8	Unmodified	_WTHRPRNP_					0	0	0			REV__ENSG00000129038|ENST00000261921|LOXL1	REV__ENSG00000129038|ENST00000261921|LOXL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.282958984375	2	532.280849	1062.54715	3.4096	0.0018149	0.27543	0.00014661	3.685	0.0019615	532.2809636824512	44.36	0.83432	44.36	44.002	44.837	0					80	35	3	0	0	0	0.75243	1	17813	17813		26.796	26.796	1	521010	+		49689	14537	32812	32953	50322	50322					0.018373496915728538
WTLMAWPA	8	Unmodified	_WTLMAWPA_					0	0	0			REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant	REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	488.7530212402344	2	488.241481	974.468409	-0.70742	-0.00034539	-1.1753	-0.00057383	-1.8827	-0.00091922	488.24092628399393	12.463	0.21725	12.463	12.293	12.51	0					6	5	2	0	0	0	0.68754	1	2782	2782		35.201	1.2791	1	969450	+		49690	12123	32813	32954	50323	50323					-0.01984638657756932
WTLTSRIRQ	9	Unmodified	_WTLTSRIRQ_					0	0	0		ENST00000338087.9_1_8:134049010-134049184:-|nuORF	ENST00000338087.9_1_8:134049010-134049184:-|nuORF	ENST00000338087.9_1_8:134049010-134049184:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	580.8299560546875	2	580.830372	1159.64619	-0.027965	-1.6243E-05	0.58333	0.00033882	0.55536	0.00032257	580.8295604861364	34.594	0.29122	34.594	34.4	34.691	0					12	7	3	0	0	0	0.22377	1	12914	12914		58.782	9.3404	1	149320			49691	8711	32814	32955	50324	50324					0.07275327865795589
WTMGGATVI	9	Unmodified	_WTMGGATVI_					0	0	0		EBF1|p.T275M|1|0.37|ENSG00000164330|chr5:158796430-158796430|G/A|missense_variant	EBF1|p.T275M|1|0.37|ENSG00000164330|chr5:158796430-158796430|G/A|missense_variant	EBF1|p.T275M|1|0.37|ENSG00000164330|chr5:158796430-158796430|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	468.2374267578125	2	468.236396	934.458238	0.033208	1.5549E-05	2.1033	0.00098486	2.1365	0.0010004	468.23754213225754	18.792	0.26414	18.792	18.685	18.949	0					14	7	3	0	0	0	0.13519	1	4744	4744		71.296	8.3173	1	588720			49692	870	32815	32956	50325	50325					-0.011612463829806075
WTPTPPLMQ	9	Unmodified	_WTPTPPLMQ_					0	0	0			REV__ENST00000460823.1_1_1:12091688-12091862:+|nuORF	REV__ENST00000460823.1_1_1:12091688-12091862:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	536.2710571289062	2	535.770603	1069.52665	0.63056	0.00033784	-2.5544	-0.0013686	-1.9238	-0.0010307	535.7694205879213	26.854	0.17636	26.854	26.767	26.943	0					13	6	3	0	0	0	0.50858	1	8200	8200		31.53	1.0262	1	126980	+		49693	14159	32816	32957	50326	50326					-0.005330018031372674
WTPTPPLMQ	9	Unmodified	_WTPTPPLMQ_					0	0	0			REV__ENST00000460823.1_1_1:12091688-12091862:+|nuORF	REV__ENST00000460823.1_1_1:12091688-12091862:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	535.7697143554688	2	535.770603	1069.52665	0.29167	0.00015627	-2.3422	-0.0012549	-2.0505	-0.0010986	535.769495914527	27.097	0.1639	27.097	27.039	27.203	0					7	3	3	0	0	0	0.41113	1	9788	9788		40.778	1.5253	1	238530	+		49694	14159	32816	32957	50327	50327					-0.005330018031372674
WTPVAEGPQ	9	Unmodified	_WTPVAEGPQ_					0	0	0			REV__ENST00000264956.10_2_4:5813382-5814396:+|nuORF	REV__ENST00000264956.10_2_4:5813382-5814396:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7426452636719	2	492.742899	983.471246	-0.055181	-2.719E-05	-0.20468	-0.00010085	-0.25986	-0.00012804	492.7428219645176	29.574	0.50276	29.574	29.522	30.025	0					18	10	2	0	0	0	0.37197	1	11123	11123		44.117	1.7207	1	174310	+		49695	18064	32817	32958	50328	50328					-0.02115091999235119
WTRGTLTQFG	10	Unmodified	_WTRGTLTQFG_					0	0	0		ENST00000422000.5_1_12:498583-521038:+|nuORF	ENST00000422000.5_1_12:498583-521038:+|nuORF	ENST00000422000.5_1_12:498583-521038:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	583.8037109375	2	583.80128	1165.58801	0.46687	0.00027256	2.4757	0.0014453	2.9426	0.0017179	584.3040603284953	21.116	0.078865	21.116	21.056	21.135	0					6	2	3	0	0	0	0.38179	1	5762	5762		45.972	0	1	116890			49696	9406	32818	32959	50329	50329					0.011836462205110365
WTVLLNPNLG	10	Unmodified	_WTVLLNPNLG_					0	0	0			REV__ENST00000502875.1_1_4:141566092-141566329:-|nuORF	REV__ENST00000502875.1_1_4:141566092-141566329:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	376.21435546875	3	376.213358	1125.61824	0.80293	0.00030207	2.8497	0.0010721	3.6527	0.0013742	376.2140914512758	17.108	0.37753	17.108	16.98	17.357	0					23	9	3	0	0	0	0.70274	1	4780	4780		21.686	1.689	1	665270	+		49697	19813	32819	32960	50330	50330					0.060460048857066795
WTYLTGIQE	9	Unmodified	_WTYLTGIQE_					0	0	0		ARSJ|p.N431Mfs*86|1|0.09|ENSG00000180801|chr4:113902782-113902782|T/-|frameshift_variant;ARSJ|p.P469Lfs*48|1|0.31|ENSG00000180801|chr4:113902668-113902668|G/-|frameshift_variant	ARSJ|p.N431Mfs*86|1|0.09|ENSG00000180801|chr4:113902782-113902782|T/-|frameshift_variant	ARSJ|p.N431Mfs*86|1|0.09|ENSG00000180801|chr4:113902782-113902782|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.7748413085938	2	555.776939	1109.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.541	1	30.541	30.041	31.041	0								0	0	0	0.22284	1	11022	11022		47.657	1.6851	1				49698	230	32820	32961	50331	50331					-0.01106267139243755
WVAEELAV	8	Unmodified	_WVAEELAV_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.7402038574219	2	458.742368	915.470183	-2.6345	-0.0012086	-1.9741	-0.00090561	-4.6086	-0.0021142	458.7414603575113	17.632	0.2119	17.632	17.526	17.737	0					11	5	3	0	0	0	0.6282	1	4409	4409		44.531	0	1	248330	+		49699	12733	32821	32962	50332	50332					0.009066936318390617
WVARDNVTE	9	Unmodified	_WVARDNVTE_					0	0	0			REV__ENST00000452544.2_2_6:157472012-157472270:+|nuORF	REV__ENST00000452544.2_2_6:157472012-157472270:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	545.2716674804688	2	545.269813	1088.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.391	1	30.391	29.891	30.891	0								0	0	0	0.27939	1	10344	10344		39.253	5.0803	1		+		49700	19320	32822	32963	50333	50333					-0.015649195675450756
WVATEPSQ	8	Unmodified	_WVATEPSQ_					0	0	0			REV__ENST00000276461.9_2_8:37612723-37612837:+|nuORF	REV__ENST00000276461.9_2_8:37612723-37612837:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	459.22412109375	2	459.2218	916.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.269	1	28.269	27.769	28.769	0								0	0	0	1.7419	1	8812	8812		45.952	1.8352	1		+		49701	18123	32823	32964	50334	50334					-0.03251067407620667
WVAVRPVLD	9	Unmodified	_WVAVRPVLD_					0	0	0			REV__nc|ENSG00000143641|Q10471-2|GALNT2	REV__nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	352.2062683105469	3	352.206315	1053.59712	-0.84194	-0.00029654	0.15864	5.5873E-05	-0.6833	-0.00024066	352.20634354228736	32.926	0.16152	32.926	32.878	33.04	0					9	6	2	0	0	0	0.61124	1	11033	11033		9.1829	0.48922	1	54835	+		49702	21052	32824	32965	50335	50335					0.07246039576853036
WVCNLLFK	8	Unmodified	_WVCNLLFK_					0	0	0			REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2791137695312	2	511.778231	1021.54191	0.88156	0.00045116	1.1613	0.00059433	2.0429	0.0010455	512.2801740183013	34.605	0.13095	34.605	34.542	34.673	0					5	3	2	0	0	0	0.64096	1	12282	12282		42.474	3.2216	1	34923	+		49703	21868	32825	32966	50336	50336					0.031999097847347
WVCQILNAAP	10	Unmodified	_WVCQILNAAP_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	557.7913818359375	2	557.789327	1113.5641	1.2944	0.00072202	1.0912	0.00060868	2.3857	0.0013307	557.7901294571558	24.954	0.30639	24.954	24.746	25.052	0					23	9	3	0	0	0	0.61187	1	7395	7395		32.812	2.3088	1	177140	+		49704	17046	32826	32967	50337	50337					0.01186089462498785
WVDKDKGTFQ	10	Unmodified	_WVDKDKGTFQ_					0	0	0		ENST00000533030.1_1_11:47376780-47400013:-|nuORF;ENSG00000066336|ENST00000378538|SPI1;nc|ENSG00000066336|P17947-2|SPI1	ENST00000533030.1_1_11:47376780-47400013:-|nuORF	ENST00000533030.1_1_11:47376780-47400013:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	612.30810546875	2	612.306395	1222.59824	2.9689	0.0018179	-1.0543	-0.00064556	1.9146	0.0011723	612.3057120047343	37.78	0.34859	37.78	37.674	38.022	0					20	7	4	0	0	0	0.50881	1	14786	14786		44.377	0.7264	1	1296500			49705	1392	32827	32968	50338	50338					-0.004157908449087699
WVDRGKKTYFI	11	Unmodified	_WVDRGKKTYFI_					0	0	0		PIP5KL1|p.R192W|1|0.21|ENSG00000167103|chr9:127927317-127927317|G/A|missense_variant	PIP5KL1|p.R192W|1|0.21|ENSG00000167103|chr9:127927317-127927317|G/A|missense_variant	PIP5KL1|p.R192W|1|0.21|ENSG00000167103|chr9:127927317-127927317|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	706.8906860351562	2	706.887887	1411.76122	1.4098	0.00099654	0.36507	0.00025806	1.7748	0.0012546	706.8882852281416	37.052	1.1228	37.052	36.04	37.163	0					79	58	2	0	0	0	0.7887	1	12407	12407		17.468	4.014	1	114940			49706	11936	32828	32969	50339	50339					0.07181012276942056
WVELPITK	8	Unmodified	_WVELPITK_					0	0	0		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant;MYCBP2|p.G651Efs*24|1|0.04|ENSG00000005810|chr13:77257781-77257782|-/ATTAGTTTTT|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2873229980469	2	493.289485	984.564418	-2.5802	-0.0012728	-1.7564	-0.00086641	-4.3366	-0.0021392	493.2884917017552	21.754	0.28507	21.754	21.657	21.943	0					12	6	3	0	0	0	0.46905	1	6391	6391		63.306	7.8021	1	1455000			49707	964	32829	32970	50340	50340					0.07151832453985207
WVFLFFPLW	9	Unmodified	_WVFLFFPLW_					0	0	0			REV__ENST00000471105.5_1_1:201958137-201965500:+|nuORF	REV__ENST00000471105.5_1_1:201958137-201965500:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	628.3394165039062	2	627.839146	1253.66374	-2.1475	-0.0013483	0.49301	0.00030953	-1.6545	-0.0010387	627.8394117821831	33.541	0.44355	33.541	33.404	33.848	0					21	12	2	0	0	0	0.52436	1	11896	11896		29.842	3.1486	1	108290	+		49708	19479	32830	32971	50341	50341					0.04705275138758225
WVFWVADCACL	11	Carbamidomethyl (C)	_WVFWVADCAC(Carbamidomethyl (C))L_	WVFWVADC(0.135)AC(0.865)L		WVFWVADC(-8.1)AC(8.1)L		0	1	0			REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.20770263671875	3	457.20711	1368.5995	0.04457	2.0378E-05	1.898	0.00086778	1.9426	0.00088816	457.207887612872	15.516	0.11687	15.516	15.441	15.557	0					12	4	3	0	0	0	0.38515	1	3376	3376		53.089	19.002	2	223490	+		49709	21645	32831	32972	50342	50342	743				-0.0700561607200143
WVFWVADCACL	11	Carbamidomethyl (C)	_WVFWVADCAC(Carbamidomethyl (C))L_	WVFWVADC(0.156)AC(0.844)L		WVFWVADC(-7.3)AC(7.3)L		0	1	0			REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	457.20751953125	3	457.20711	1368.5995	0.76597	0.00035021	0.505	0.00023089	1.271	0.00058109	457.20734320828086	15.778	0.38196	15.778	15.697	16.079	0					23	9	4	0	0	0	0.50799	1	4142	4142		43.651	12.017	2	3532700	+		49710	21645	32831	32972	50343	50343	743				-0.0700561607200143
WVFWVADCACL	11	Carbamidomethyl (C)	_WVFWVADCAC(Carbamidomethyl (C))L_	WVFWVADC(0.029)AC(0.971)L		WVFWVADC(-15)AC(15)L		0	1	0			REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.2076110839844	3	457.20711	1368.5995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.521	1	15.521	15.021	16.021	0								0	0	0	0.30435	1	3557	3557		51.528	6.8883	2		+		49711	21645	32831	32972	50344	50344	743				-0.0700561607200143
WVFWVADCACL	11	Carbamidomethyl (C)	_WVFWVADCAC(Carbamidomethyl (C))L_	WVFWVADC(0.029)AC(0.971)L		WVFWVADC(-15)AC(15)L		0	1	0			REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	REV__TLR7|p.T788A|1|0.63|ENSG00000196664|chrX:12887870-12887870|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	457.2076721191406	3	457.20711	1368.5995	-0.14933	-6.8275E-05	0.83826	0.00038326	0.68893	0.00031498	457.2075427557136	15.745	0.46284	15.745	15.584	16.047	0					31	9	5	0	0	0	0.40021	1	4352	4352		51.528	14.02	2	14820000	+		49712	21645	32831	32972	50345	50345	743				-0.0700561607200143
WVGDSTGVIL	10	Unmodified	_WVGDSTGVIL_					0	0	0		ENST00000483508.5_1_1:109910028-109912178:-|nuORF;ENSG00000134243|ENST00000256637|SORT1	ENST00000483508.5_1_1:109910028-109912178:-|nuORF	ENST00000483508.5_1_1:109910028-109912178:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7801513671875	2	523.779482	1045.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.953	1	44.953	44.453	45.453	0								0	0	0	0.3639	1	17445	17445		40.778	1.7567	1				49713	3899	32832	32973	50346	50346					0.023460367234065416
WVGTNKSLTE	10	Unmodified	_WVGTNKSLTE_					0	0	0		SELL|p.L347Sfs*25|1|0.28|ENSG00000188404|chr1:169701641-169701641|G/-|frameshift_variant;ENSG00000188404|ENST00000236147|SELL;ENST00000463108.5_1_1:169670695-169680678:-|nuORF;nc|ENSG00000188404|P14151-2|SELL	SELL|p.L347Sfs*25|1|0.28|ENSG00000188404|chr1:169701641-169701641|G/-|frameshift_variant	SELL|p.L347Sfs*25|1|0.28|ENSG00000188404|chr1:169701641-169701641|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	567.7939453125	2	567.793121	1133.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.451	1	36.451	35.951	36.951	0								0	0	0	0.2634	1	13052	13052		56.434	10.462	1				49714	7250	32833	32974	50347	50347					0.010245202637634065
WVHGNMSF	8	Unmodified	_WVHGNMSF_					0	0	0			REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.2196350097656	2	489.218537	976.422522	-0.51615	-0.00025251	2.3486	0.001149	1.8324	0.00089647	489.21962273993546	26.393	0.22055	26.393	26.298	26.519	0					10	4	3	0	0	0	0.6282	1	9340	9340		44.531	7.5026	1	209000	+		49715	22142	32834	32975	50348	50348					-0.0666328383997552
WVKGLVGAQ	9	Unmodified	_WVKGLVGAQ_					0	0	0			REV__ENST00000490622.5_1_19:35988327-35991112:-|nuORF	REV__ENST00000490622.5_1_19:35988327-35991112:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.27764892578125	2	479.279452	956.544351	-0.31386	-0.00015043	-4.396	-0.0021069	-4.7098	-0.0022573	479.2773228146274	26.085	0.13469	26.085	25.998	26.133	0					5	3	2	0	0	0	0.37197	1	8359	8359		44.117	6.9577	1	76359	+		49716	19711	32835	32976	50349	50349					0.0643408151404401
WVKGWWPSA	9	Unmodified	_WVKGWWPSA_					0	0	0			REV__ENST00000579408.5_2_18:47018090-47018201:-|nuORF	REV__ENST00000579408.5_2_18:47018090-47018201:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	558.7864379882812	2	558.784902	1115.55525	1.8002	0.0010059	0.4583	0.00025609	2.2585	0.001262	558.7853052482186	12.187	0.081591	12.187	12.113	12.195	0					4	2	2	0	0	0	0.24095	1	2508	2508		56.721	1.6371	1	122690	+		49717	20444	32836	32977	50350	50350					0.0020948388832948694
WVKQQRCAVS	10	Unmodified	_WVKQQRCAVS_					0	0	0		ENSG00000100422|ENST00000216264|CERK	ENSG00000100422|ENST00000216264|CERK	ENSG00000100422|ENST00000216264|CERK	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	602.813232421875	2	602.816407	1203.61826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.744	1	15.744	15.244	16.244	0								0	0	0	0.41253	1	3647	3647		26.693	12.556	1				49718	2025	32837	32978	50351	50351					0.024596816140501687
WVLAAVACTVL	11	Unmodified	_WVLAAVACTVL_					0	0	0		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant;nc|ENSG00000166947|P16452-3|EPB42;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	573.3248901367188	2	573.323002	1144.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.906	1	42.906	42.406	43.406	0								0	0	0	0.44116	1	16226	16226		27.882	2.3082	1				49719	5954	32838	32979	50352	50352					0.06492119673430352
WVLATIKK	8	Unmodified	_WVLATIKK_					0	0	0			REV__ENST00000248071.5_1_19:16438326-16438434:+|nuORF	REV__ENST00000248071.5_1_19:16438326-16438434:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	479.80615234375	2	479.807845	957.601138	-2.9259	-0.0014039	-0.63696	-0.00030562	-3.5628	-0.0017095	479.8074976486958	12.654	0.073961	12.654	12.611	12.685	0					6	4	2	0	0	0	0.61938	1	2469	2469		45.952	45.952	1	102400	+		49720	17951	32839	32980	50353	50353					0.12064129070574836
WVLGVAGVAG	10	Unmodified	_WVLGVAGVAG_					0	0	0			REV__ENSG00000127540|ENST00000591899|UQCR11	REV__ENSG00000127540|ENST00000591899|UQCR11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	464.7655334472656	2	464.766178	927.517802	0.68429	0.00031804	-0.86612	-0.00040254	-0.18183	-8.4509E-05	464.765681373782	38.534	0.51208	38.534	38.415	38.928	0					49	18	4	0	0	0	0.661	1	15091	15091		26.796	0	1	2720900	+		49721	14492	32840	32981	50354	50354					0.051143926227155134
WVLHGVPR	8	Unmodified	_WVLHGVPR_					0	0	0		ENST00000476719.1_1_9:135601077-135753754:-|nuORF;nc|ENSG00000165695|Q96MA6-2|AK8;ENSG00000165695|ENST00000298545|AK8	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	482.28131103515625	2	482.279786	962.54502	0.16096	7.7629E-05	3.42	0.0016494	3.581	0.001727	482.281880671897	34.631	0.16592	34.631	34.542	34.708	0					6	4	2	0	0	0	0.75243	1	12302	12302		26.796	5.0938	1	58900			49722	9911	32841	32982	50355	50355					0.06224920953764013
WVLIFLSI	8	Unmodified	_WVLIFLSI_					0	0	0		ENST00000465969.5_1_1:63879657-63879738:+|nuORF	ENST00000465969.5_1_1:63879657-63879738:+|nuORF	ENST00000465969.5_1_1:63879657-63879738:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	496.303955078125	2	495.804771	989.59499	-2.4014	-0.0011906	-1.1681	-0.00057914	-3.5695	-0.0017698	495.8041769929342	44.217	0.33492	44.217	44.131	44.466	0					38	20	3	0	0	0	0.34071	1	15212	15212		77.944	77.944	1	731280			49723	9783	32842	32983	50356	50356					0.09977610839052886
WVLLQDILLQ	10	Unmodified	_WVLLQDILLQ_					0	0	0		DMD|p.K560Q|1|0.09|ENSG00000198947|chrX:32573771-32573771|T/G|missense_variant	DMD|p.K560Q|1|0.09|ENSG00000198947|chrX:32573771-32573771|T/G|missense_variant	DMD|p.K560Q|1|0.09|ENSG00000198947|chrX:32573771-32573771|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	620.8673706054688	2	620.868631	1239.72271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.175	1	27.175	26.675	27.675	0								0	0	0	0.27575	1	8347	8347		54.722	9.7001	1				49724	802	32843	32984	50357	50357					0.11243706642426332
WVPASRGEI	9	Unmodified	_WVPASRGEI_					0	0	0		nc|ENSG00000225523|A0A0A0MT36|IGKV6D-21;nc|ENSG00000211611|A0A0C4DH24|IGKV6-21	nc|ENSG00000225523|A0A0A0MT36|IGKV6D-21	nc|ENSG00000225523|A0A0A0MT36|IGKV6D-21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7718811035156	2	507.771991	1013.52943	0.8809	0.00044729	-0.66953	-0.00033997	0.21136	0.00010732	507.77167398770575	32.764	0.32952	32.764	32.625	32.954	0					15	8	2	0	0	0	0.37197	1	12051	12051		44.117	6.9577	1	167160			49725	11728	32844	32985	50358	50358					0.023205896460467557
WVPEGAGPVLG	11	Unmodified	_WVPEGAGPVLG_					0	0	0		ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1;ENST00000553646.1_1_14:75375979-75376912:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555834.5_1_14:75375979-75389943:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.19415283203125	3	361.194075	1080.5604	0.73045	0.00026384	-1.2949	-0.0004677	-0.56441	-0.00020386	361.1935950278325	31.65	0.30129	31.65	31.531	31.833	0					14	7	3	0	0	0	0.65797	1	11543	11543		31.634	1.3165	1	220040			49726	7541	32845	32986	50359	50359					0.023337429602634074
WVPGVGMEIR	10	Unmodified	_WVPGVGMEIR_					0	0	0		ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENST00000588321.1_1_19:11453493-11456176:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	572.3040771484375	2	572.302601	1142.59065	1.7326	0.0009916	1.4212	0.00081334	3.1538	0.0018049	572.303289201344	33.27	0.27119	33.27	33.119	33.39	0					20	7	3	0	0	0	0.4287	1	12261	12261		40.778	0	1	236730			49727	10922	32846	32987	50360	50360					0.02505778353815913
WVQNSISKVE	10	Unmodified	_WVQNSISKVE_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-11|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-11|TRPM3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	397.2134704589844	3	397.211906	1188.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.046	1	13.046	12.546	13.546	0								0	0	0	0.41137	1	3085	3085		27.047	0.98393	1		+		49728	13324	32847	32988	50361	50361					0.02712495672130899
WVRGEGLTP	9	Unmodified	_WVRGEGLTP_					0	0	0			REV__ENST00000334801.7_1_11:118780860-118781538:-|nuORF	REV__ENST00000334801.7_1_11:118780860-118781538:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	507.7318420410156	2	507.771991	1013.52943	-1.9092	-0.00096945	2.1198	0.0010764	0.21052	0.0001069	507.77316274634137	32.559	0.51016	32.559	32.378	32.889	0					23	15	2	0	0	0	0.30951	1	11453	11453		49.442	3.4896	1	122890	+		49729	18404	32848	32989	50362	50362					0.023205896460467557
WVRLATVFAY	10	Unmodified	_WVRLATVFAY_					0	0	0		ENSG00000259330|ENST00000638170|INAFM2	ENSG00000259330|ENST00000638170|INAFM2	ENSG00000259330|ENST00000638170|INAFM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	409.2301025390625	3	409.229119	1224.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.825	1	12.825	12.325	13.325	0								0	0	0	0.4201	1	2782	2782		12.812	1.3571	1				49730	8038	32849	32990	50363	50363					0.06218284156716436
WVSAFTSL	8	Unmodified	_WVSAFTSL_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.7347412109375	2	455.737086	909.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.258	1	28.258	27.758	28.758	0								0	0	0	1.7419	1	9355	9355		52.299	4.3836	1		+		49731	15001	32850	32991	50364	50364					0.0012671097742895654
WVSAWLPVF	9	Unmodified	_WVSAWLPVF_					0	0	0		ENST00000484537.2_1_1:1397881-1403907:+|nuORF	ENST00000484537.2_1_1:1397881-1403907:+|nuORF	ENST00000484537.2_1_1:1397881-1403907:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	368.86968994140625	3	368.867411	1103.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.22	1	50.22	49.72	50.72	0								0	0	0	0.33492	1	19835	19835		27.882	10.414	1				49732	9996	32851	32992	50365	50365					0.03275538690877511
WVTEGLGIR	9	Unmodified	_WVTEGLGIR_					0	0	0		ENST00000474432.1_1_3:48604554-48604767:-|nuORF	ENST00000474432.1_1_3:48604554-48604767:-|nuORF	ENST00000474432.1_1_3:48604554-48604767:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7894287109375	2	515.787641	1029.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.623	1	22.623	22.123	23.123	0								0	0	0	0.1633	1	6688	6688		56.721	14.325	1				49733	9894	32852	32993	50366	50366					0.04713162680127425
WVTILPAKK	9	Unmodified	_WVTILPAKK_					0	0	0		ENSG00000203970|ENST00000371148|DEFB110;DEFB110|p.H11N|1|0.15|ENSG00000203970|chr6:50021905-50021905|G/T|missense_variant	ENSG00000203970|ENST00000371148|DEFB110	ENSG00000203970|ENST00000371148|DEFB110	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	528.3323364257812	2	528.334227	1054.6539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.153	1	18.153	17.653	18.653	0								0	0	0	0.3428	1	4681	4681		26.693	5.746	1				49734	7664	32853	32994	50367	50367					0.12876087133349756
WVTLSFTY	8	Unmodified	_WVTLSFTY_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.7554016113281	2	508.758018	1015.50148	-1.8736	-0.00095321	-1.818	-0.00092493	-3.6916	-0.0018781	508.757092329626	34.867	0.34045	34.867	34.741	35.082	0					32	12	4	0	0	0	0.57802	1	12348	12348		52.299	9.8247	1	505730	+		49735	12879	32854	32995	50368	50368					-0.005647333340448313
WVVAEVRRL	9	Unmodified	_WVVAEVRRL_					0	0	0		nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1;TBC1D1|p.E431*|1|0.43|ENSG00000065882|chr4:38027862-38027863|-/T|frameshift_variant;TBC1D1|p.N498Tfs*7|1|0.48|ENSG00000065882|chr4:38044437-38044437|A/-|frameshift_variant;TBC1D1|p.V628Efs*7|1|0.41|ENSG00000065882|chr4:38049869-38049870|AG/-|frameshift_variant	nc|ENSG00000065882|Q86TI0-2|TBC1D1	nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	564.3377075195312	2	564.337833	1126.66111	-1.0734	-0.00060577	0.33918	0.00019141	-0.73423	-0.00041435	564.3379198676312	33.739	2.2056	33.739	33.628	35.834	0					232	72	5	0	0	0	0.53064	1	11848	11848		21.96	0	1	7060700			49736	1380	32855	32996	50369	50369					0.10284819733806216
WVVAQGSQAG	10	Unmodified	_WVVAQGSQAG_					0	0	0			REV__ENST00000473391.1_1_7:150067498-150067537:+|nuORF	REV__ENST00000473391.1_1_7:150067498-150067537:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	501.75531005859375	2	501.753798	1001.49304	0.69398	0.00034821	3.7896	0.0019015	4.4836	0.0022497	501.7557405905802	17.622	0.20633	17.622	17.539	17.746	0					11	5	4	0	0	0	0.3337	1	5000	5000		63.534	5.3039	1	1677200	+		49737	19504	32856	32997	50370	50370					-0.0076428725066080005
WVVDVKIL	8	Unmodified	_WVVDVKIL_					0	0	0			REV__nc|ENSG00000197580|Q9BYV7-4|BCO2	REV__nc|ENSG00000197580|Q9BYV7-4|BCO2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	486.3009948730469	2	486.299853	970.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.199	1	42.199	41.699	42.699	0								0	0	0	1.7419	1	16827	16827		35.618	0	1		+		49738	21180	32857	32998	50371	50371					0.09868422833653767
WWFGPSVL	8	Unmodified	_WWFGPSVL_					0	0	0			REV__ENST00000543587.5_3_11:71822512-71823788:-|nuORF	REV__ENST00000543587.5_3_11:71822512-71823788:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.25616455078125	2	496.255446	990.496338	0.72591	0.00036024	0.55096	0.00027342	1.2769	0.00063365	496.25583229553354	28.292	0.37208	28.292	28.165	28.537	0					15	9	3	0	0	0	0.55361	1	9994	9994		54.765	2.4655	1	447630	+		49739	20151	32858	32999	50372	50372					0.0007100759399918388
WWLWEPVA	8	Unmodified	_WWLWEPVA_					0	0	0			REV__ENST00000278426.7_2_11:57263521-57268513:-|nuORF	REV__ENST00000278426.7_2_11:57263521-57268513:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.7760620117188	2	543.774003	1085.53345	1.8299	0.00099505	1.6748	0.00091069	3.5047	0.0019057	543.7747973616295	16.323	0.083044	16.323	16.269	16.352	0					5	3	2	0	0	0	0.72381	1	3701	3701		28.254	1.4582	1	48128	+		49740	18124	32859	33000	50373	50373					-0.005893208602401501
WWMKGSTPTQ	10	Oxidation (M)	_WWM(Oxidation (M))KGSTPTQ_		WWM(1)KGSTPTQ		WWM(70)KGSTPTQ	0	0	1		MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	619.2890014648438	2	619.287148	1236.55974	3.0825	0.001909	-0.31299	-0.00019383	2.7695	0.0017151	619.2878271088342	34.358	0.64847	34.358	34.069	34.717	0					32	13	5	0	0	0	0.28036	1	13155	13155		69.628	9.6968	1	989750			49741	964	32860	33001	50374	50374		45			-0.04907419751089037
WWPLLLGL	8	Unmodified	_WWPLLLGL_					0	0	0			REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	333.2012634277344	3	333.200501	996.579674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.782	1	43.782	43.282	44.282	0								0	0	0	1.7419	1	17099	17099		12.959	0.14747	1		+		49742	18700	32861	33002	50375	50375					0.08124744041845133
WWPSESSF	8	Unmodified	_WWPSESSF_					0	0	0		ENST00000228506.7_1_12:121134259-121134358:+|nuORF	ENST00000228506.7_1_12:121134259-121134358:+|nuORF	ENST00000228506.7_1_12:121134259-121134358:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.2228393554688	2	513.2218	1024.42905	-0.46532	-0.00023881	2.9203	0.0014988	2.455	0.00126	513.2235133104867	33.174	0.44535	33.174	32.987	33.433	0					15	10	2	0	0	0	0.64096	1	12682	12682		42.474	1.6963	1	300580			49743	8192	32862	33003	50376	50376					-0.082190674076287
WWSKAFSF	8	Unmodified	_WWSKAFSF_					0	0	0			REV__ENSG00000171724|ENST00000302536|VAT1L	REV__ENSG00000171724|ENST00000302536|VAT1L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	529.761474609375	2	529.758352	1057.50215	3.4454	0.0018252	1.9595	0.0010381	5.4049	0.0028633	529.7597326970406	41.72	0.23203	41.72	41.584	41.816	0					14	6	3	0	0	0	0.51384	1	16616	16616		58.782	3.2778	1	141880	+		49744	16427	32863	33004	50377	50377					-0.024298938943502435
WWVMDGGAL	9	Unmodified	_WWVMDGGAL_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7433471679688	2	517.741845	1033.46914	3.3307	0.0017245	-0.82072	-0.00042492	2.51	0.0012995	517.7414027243416	27.985	0.26484	27.985	27.878	28.143	0					7	5	2	0	0	0	0.39123	1	10095	10095		42.474	6.8562	1	949090	+		49745	15695	32864	33005	50378	50378					-0.04625844008683089
WYCPEDHQWL	10	Unmodified	_WYCPEDHQWL_					0	0	0			REV__ENSG00000074071|ENST00000397375|MRPS34	REV__ENSG00000074071|ENST00000397375|MRPS34	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	688.7879638671875	2	688.790055	1375.56556	0.24372	0.00016788	-2.6326	-0.0018133	-2.3889	-0.0016455	688.7883183911761	21.613	0.1825	21.613	21.5	21.683	0					10	6	2	0	0	0	0.69166	1	5969	5969		23.042	0.46283	1	74538	+		49746	13213	32865	33006	50379	50379					-0.10720321239409714
WYNISLVY	8	Unmodified	_WYNISLVY_					0	0	0		TMEM169|p.F191S|1|0.38|ENSG00000163449|chr2:216100220-216100220|T/C|missense_variant	TMEM169|p.F191S|1|0.38|ENSG00000163449|chr2:216100220-216100220|T/C|missense_variant	TMEM169|p.F191S|1|0.38|ENSG00000163449|chr2:216100220-216100220|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2695922851562	2	529.271293	1056.52803	0.088921	4.7064E-05	-2.4641	-0.0013042	-2.3752	-0.0012571	529.2696396575452	32.646	0.228	32.646	32.573	32.801	0					12	9	2	0	0	0	0.49887	1	10894	10894		60.294	2.4827	1	79765			49747	22545	32866	33007	50380	50380					0.002029555572789832
WYRPWIWMKMR	11	Unmodified	_WYRPWIWMKMR_					0	0	0			REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF	REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	827.41455078125	2	826.920684	1651.82681	-3.794	-0.0031374	-3.9819	-0.0032927	-7.7759	-0.0064301	826.9181082478528	41.388	0.21255	41.388	41.219	41.432	0					19	10	3	0	0	0	0.82504	1	15727	15727		9.7057	3.7845	1	73265	+		49748	19279	32867	33008	50381	50381					0.02697386926593026
YAACQSHAF	9	Carbamidomethyl (C)	_YAAC(Carbamidomethyl (C))QSHAF_	YAAC(1)QSHAF		YAAC(62)QSHAF		0	1	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.724609375	2	527.724184	1053.43381	2.1315	0.0011248	-1.5011	-0.00079216	0.6304	0.00033268	527.7233484169778	25.155	0.19807	25.155	25.06	25.258	0					7	4	2	0	0	0	0.19605	1	8574	8574		62.107	24.948	1	181710			49749	7965	32868	33009	50382	50382	345				-0.09076506536507623
YAACQSHAF	9	Carbamidomethyl (C)	_YAAC(Carbamidomethyl (C))QSHAF_	YAAC(1)QSHAF		YAAC(99)QSHAF		0	1	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.2262573242188	2	527.724184	1053.43381	0.27866	0.00014706	0.87997	0.00046438	1.1586	0.00061144	527.7246409411252	24.895	0.2314	24.895	24.806	25.037	0					11	7	2	0	0	0	0.0406	1	7675	7675		98.629	61.47	1	138110			49750	7965	32868	33009	50383	50383	345				-0.09076506536507623
YAACQSHAF	9	Carbamidomethyl (C)	_YAAC(Carbamidomethyl (C))QSHAF_	YAAC(1)QSHAF		YAAC(120)QSHAF		0	1	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.7245483398438	2	527.724184	1053.43381	1.7529	0.00092507	-1.5807	-0.00083419	0.1722	9.0875E-05	527.7234997051287	25.147	0.31869	25.147	25.04	25.358	0					13	6	3	0	0	0	0.023928	1	8904	8904		115.49	74.716	1	986680			49751	7965	32868	33009	50384	50384	345				-0.09076506536507623
YAACQSHAF	9	Carbamidomethyl (C)	_YAAC(Carbamidomethyl (C))QSHAF_	YAAC(1)QSHAF		YAAC(67)QSHAF		0	1	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7239379882812	2	527.724184	1053.43381	1.2481	0.00065865	-1.9081	-0.0010069	-0.65997	-0.00034828	527.7234912967986	25.004	0.1488	25.004	24.906	25.055	0					7	3	3	0	0	0	0.15163	1	7878	7878		67.494	20.727	1	102380			49752	7965	32868	33009	50385	50385	345				-0.09076506536507623
YAACQSHAF	9	Carbamidomethyl (C)	_YAAC(Carbamidomethyl (C))QSHAF_	YAAC(1)QSHAF		YAAC(100)QSHAF		0	1	0		ENSG00000244187|ENST00000290079|TMEM141;ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENSG00000244187|ENST00000290079|TMEM141	ENSG00000244187|ENST00000290079|TMEM141	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7245483398438	2	527.724184	1053.43381	1.6288	0.00085954	-1.2166	-0.00064204	0.41214	0.0002175	527.7236556476034	25.053	0.31796	25.053	24.946	25.264	0					14	6	3	0	0	0	0.035062	1	8736	8736		104.06	73.553	1	906550			49753	7965	32868	33009	50386	50386	345				-0.09076506536507623
YAAEGQKL	8	Unmodified	_YAAEGQKL_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.2319641113281	2	440.232168	878.449782	0.55992	0.00024649	-0.6958	-0.00030631	-0.13588	-5.9818E-05	440.23187686310143	23.137	0.30511	23.137	22.887	23.193	0					12	7	3	0	0	0	0.49216	1	7631	7631		60.972	5.4677	1	358420			49754	5253	32869	33010	50387	50387					0.005695229720345196
YAAEYANAL	9	Unmodified	_YAAEYANAL_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	493.23468017578125	2	493.234907	984.455261	0.77767	0.00038357	-1.2154	-0.00059946	-0.43769	-0.00021588	493.23418465802007	39.561	0.18471	39.561	39.504	39.689	0					11	7	2	0	0	0	0.019882	1	15071	15071		122.18	53.691	1	333850			49755	4373	32870	33011	50388	50388					-0.03758798236151506
YAAEYANAL	9	Unmodified	_YAAEYANAL_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.23529052734375	2	493.234907	984.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.293	1	39.293	38.793	39.793	0								0	0	0	0.14033	1	13215	13215		62.107	17.576	1				49756	4373	32870	33011	50389	50389					-0.03758798236151506
YAAEYANAL	9	Unmodified	_YAAEYANAL_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	493.2343444824219	2	493.234907	984.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.508	1	39.508	39.008	40.008	0								0	0	0	0.0082738	1	15542	15542		157.21	69.454	1				49757	4373	32870	33011	50390	50390					-0.03758798236151506
YAAEYANAL	9	Unmodified	_YAAEYANAL_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2351379394531	2	493.234907	984.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.332	1	39.332	38.832	39.832	0								0	0	0	0.082437	1	14028	14028		76.774	27.238	1				49758	4373	32870	33011	50391	50391					-0.03758798236151506
YAAEYANAL	9	Unmodified	_YAAEYANAL_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	493.2348937988281	2	493.234907	984.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.324	1	39.324	38.824	39.824	0								0	0	0	0.19749	1	14025	14025		51.335	8.9974	1				49759	4373	32870	33011	50392	50392					-0.03758798236151506
YAAEYANAL	9	Unmodified	_YAAEYANAL_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2351989746094	2	493.234907	984.455261	-0.60889	-0.00030032	0.45335	0.00022361	-0.15554	-7.6717E-05	493.23515893219644	39.535	0.24256	39.535	39.387	39.63	0					8	5	2	0	0	0	0.055856	1	15600	15600		93.195	36.474	1	516810			49760	4373	32870	33011	50393	50393					-0.03758798236151506
YAAEYANAL	9	Unmodified	_YAAEYANAL_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.2347412109375	2	493.234907	984.455261	0.86727	0.00042777	-1.2734	-0.0006281	-0.40615	-0.00020033	493.2342890330686	39.475	0.19938	39.475	39.376	39.575	0					12	4	3	0	0	0	0.023074	1	15595	15595		116.9	42.929	1	1668100			49761	4373	32870	33011	50394	50394					-0.03758798236151506
YAAGAKLVL	9	Unmodified	_YAAGAKLVL_					0	0	0		ENSG00000109016|ENST00000395511|DHRS7B	ENSG00000109016|ENST00000395511|DHRS7B	ENSG00000109016|ENST00000395511|DHRS7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	453.27618408203125	2	453.276378	904.538203	0.68998	0.00031275	-1.1171	-0.00050634	-0.42709	-0.00019359	453.27572930885793	36.136	0.23808	36.136	36.057	36.295	0					10	6	2	0	0	0	0.11118	1	13601	13601		76.847	11.043	1	205610			49762	2560	32871	33012	50395	50395					0.08211563282520729
YAAGAKLVL	9	Unmodified	_YAAGAKLVL_					0	0	0		ENSG00000109016|ENST00000395511|DHRS7B	ENSG00000109016|ENST00000395511|DHRS7B	ENSG00000109016|ENST00000395511|DHRS7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.2760925292969	2	453.276378	904.538203	-0.0018964	-8.5957E-07	-0.051733	-2.345E-05	-0.05363	-2.4309E-05	453.27622066007774	35.878	0.10646	35.878	35.834	35.94	0					6	4	2	0	0	0	0.43426	1	12812	12812		38.806	3.1879	1	44451			49763	2560	32871	33012	50396	50396					0.08211563282520729
YAAGAKLVL	9	Unmodified	_YAAGAKLVL_					0	0	0		ENSG00000109016|ENST00000395511|DHRS7B	ENSG00000109016|ENST00000395511|DHRS7B	ENSG00000109016|ENST00000395511|DHRS7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.27587890625	2	453.276378	904.538203	0.87738	0.0003977	-1.3635	-0.00061805	-0.48614	-0.00022035	453.27562197855565	36.044	0.31804	36.044	35.914	36.233	0					13	6	3	0	0	0	0.11118	1	14000	14000		76.847	0	1	253750			49764	2560	32871	33012	50397	50397					0.08211563282520729
YAAGVHSVL	9	Unmodified	_YAAGVHSVL_					0	0	0		ENST00000490487.1_1_7:4829477-4830874:+|nuORF;AP5Z1|p.Q696Rfs*6|3|0.43|ENSG00000242802|chr7:4790814-4790814|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.74755859375	2	458.747985	915.481417	-0.65471	-0.00030035	0.087881	4.0315E-05	-0.56683	-0.00026003	458.7479662154891	31.449	0.25388	31.449	31.319	31.573	0					14	6	3	0	0	0	0.11118	1	11440	11440		76.847	24.547	1	858850			49765	179	32872	33013	50398	50398					0.020295157259852203
YAAGVHSVL	9	Unmodified	_YAAGVHSVL_					0	0	0		ENST00000490487.1_1_7:4829477-4830874:+|nuORF;AP5Z1|p.Q696Rfs*6|3|0.43|ENSG00000242802|chr7:4790814-4790814|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	458.74798583984375	2	458.747985	915.481417	-0.96051	-0.00044063	0.55722	0.00025562	-0.40329	-0.00018501	458.74819509214495	31.197	0.30023	31.197	31.132	31.432	0					27	11	3	0	0	0	0.058689	1	10313	10313		92.191	34.379	1	513910			49766	179	32872	33013	50399	50399					0.020295157259852203
YAAGVHSVL	9	Unmodified	_YAAGVHSVL_					0	0	0		ENST00000490487.1_1_7:4829477-4830874:+|nuORF;AP5Z1|p.Q696Rfs*6|3|0.43|ENSG00000242802|chr7:4790814-4790814|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	458.747802734375	2	458.747985	915.481417	0.082968	3.8062E-05	-0.41169	-0.00018886	-0.32872	-0.0001508	458.74765022988083	31.202	0.38108	31.202	31.105	31.487	0					25	10	3	0	0	0	0.058689	1	10710	10710		92.191	38.839	1	346590			49767	179	32872	33013	50400	50400					0.020295157259852203
YAAGVHSVL	9	Unmodified	_YAAGVHSVL_					0	0	0		ENST00000490487.1_1_7:4829477-4830874:+|nuORF;AP5Z1|p.Q696Rfs*6|3|0.43|ENSG00000242802|chr7:4790814-4790814|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	ENST00000490487.1_1_7:4829477-4830874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	458.74774169921875	2	458.747985	915.481417	0.88028	0.00040382	-1.4683	-0.00067359	-0.58806	-0.00026977	458.74719857908633	31.411	0.75827	31.411	31.059	31.818	0					36	15	4	0	0	0	0.037966	1	11726	11726		101.21	32.727	1	3664700			49768	179	32872	33013	50401	50401					0.020295157259852203
YAAKDAEKI	9	Unmodified	_YAAKDAEKI_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.7716064453125	2	504.771657	1007.52876	1.0458	0.00052791	2.1389	0.0010796	3.1847	0.0016075	504.77173044928315	38.752	0.19363	38.752	38.65	38.843	0					17	7	3	0	0	0	0.35021	1	15204	15204		45.972	1.5951	1	143760			49769	3189	32873	33014	50402	50402					0.025297502063153843
YAANPGQLF	9	Unmodified	_YAANPGQLF_					0	0	0		ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	ENSG00000168101|ENST00000304301|NUDT16L1	ENSG00000168101|ENST00000304301|NUDT16L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.74609375	2	490.745442	979.476331	0.59116	0.00029011	0.0095944	4.7084E-06	0.60076	0.00029482	490.7452324534485	46.86	0.14665	46.86	46.733	46.879	0					11	8	2	0	0	0	0.18605	1	17958	17958		63.306	22.734	1	37551			49770	6063	32874	33015	50403	50403					-0.014227881366196016
YAANPGQLF	9	Unmodified	_YAANPGQLF_					0	0	0		ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	ENSG00000168101|ENST00000304301|NUDT16L1	ENSG00000168101|ENST00000304301|NUDT16L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.7456970214844	2	490.745442	979.476331	0.78345	0.00038447	-0.51303	-0.00025177	0.27042	0.00013271	490.7453365934204	46.794	0.14789	46.794	46.708	46.856	0					13	7	2	0	0	0	0.41354	1	18719	18719		40.573	40.573	1	70160			49771	6063	32874	33015	50404	50404					-0.014227881366196016
YAAQAHLKL	9	Unmodified	_YAAQAHLKL_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	338.8624572753906	3	338.862548	1013.56581	0.51303	0.00017385	-0.874	-0.00029617	-0.36098	-0.00012232	338.86228107630836	27.497	0.21609	27.497	27.407	27.623	0					10	5	3	0	0	0	0.50461	1	9619	9619		47.657	16.128	1	497180			49772	3816	32875	33016	50405	50405					0.05957466542747625
YAAQAHLKL	9	Unmodified	_YAAQAHLKL_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	507.7903137207031	2	507.790184	1013.56581	-0.029434	-1.4946E-05	-0.17328	-8.799E-05	-0.20271	-0.00010294	507.79025499371744	27.497	0.21609	27.497	27.407	27.623	0					9	5	3	0	0	0	0.25109	1	9622	9622		55.504	14.932	1	361170			49773	3816	32875	33016	50406	50406					0.05957466542747625
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.73516845703125	2	461.735074	921.455596	0.10557	4.8746E-05	-0.13078	-6.0387E-05	-0.02521	-1.1641E-05	461.73498979270386	29.668	0.21647	29.668	29.588	29.804	0					19	9	3	0	0	0	0.021961	1	9384	9384		118.74	39.292	1	524330			49774	3083;22357	32876	33017	50407	50407					-0.00827378516294175
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.735595703125	2	461.735074	921.455596	-0.8256	-0.00038121	0.49123	0.00022682	-0.33436	-0.00015439	461.7352270764874	29.708	0.22019	29.708	29.592	29.812	0					19	8	3	0	0	0	0.063171	1	9679	9679		90.601	21.814	1	239900			49775	3083;22357	32876	33017	50408	50408					-0.00827378516294175
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7346496582031	2	461.735074	921.455596	-0.14869	-6.8653E-05	-0.24668	-0.0001139	-0.39537	-0.00018255	461.73492831282164	29.97	0.20792	29.97	29.868	30.076	0					11	4	3	0	0	0	0.0086566	1	11142	11142		143.89	41.113	1	649640			49776	3083;22357	32876	33017	50409	50409					-0.00827378516294175
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	461.7349548339844	2	461.735074	921.455596	0.72178	0.00033327	-0.40675	-0.00018781	0.31503	0.00014546	461.73474517743335	29.957	0.2965	29.957	29.851	30.148	0					19	6	4	0	0	0	0.014688	1	11156	11156		131.03	35.216	1	2030000			49777	3083;22357	32876	33017	50410	50410					-0.00827378516294175
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.7351989746094	2	461.735074	921.455596	-0.12539	-5.7897E-05	0.34064	0.00015729	0.21525	9.9389E-05	461.7351894908407	29.739	0.20125	29.739	29.628	29.829	0					10	5	2	0	0	0	0.048471	1	10036	10036		95.815	39.094	1	261100			49778	3083;22357	32876	33017	50411	50411					-0.00827378516294175
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.73577880859375	2	461.735074	921.455596	-0.19125	-8.8308E-05	0.10076	4.6527E-05	-0.090489	-4.1782E-05	461.73521970471177	29.73	0.28495	29.73	29.655	29.94	0					13	8	2	0	0	0	0.021961	1	10032	10032		118.74	27.966	1	371050			49779	3083;22357	32876	33017	50412	50412					-0.00827378516294175
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.73504638671875	2	461.735074	921.455596	-0.46433	-0.0002144	0.43657	0.00020158	-0.027759	-1.2817E-05	461.73526970058134	29.905	0.26736	29.905	29.798	30.065	0					16	5	4	0	0	0	0.0040894	1	11019	11019		162.25	59.479	1	1472200			49780	3083;22357	32876	33017	50413	50413					-0.00827378516294175
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.7348327636719	2	461.735074	921.455596	0.81704	0.00037726	-1.1265	-0.00052013	-0.30942	-0.00014287	461.73451401979224	29.887	0.3175	29.887	29.781	30.099	0					18	6	4	0	0	0	0.0086566	1	11011	11011		143.89	28.428	1	1945300			49781	3083;22357	32876	33017	50414	50414					-0.00827378516294175
YAAQATTPM	9	Unmodified	_YAAQATTPM_					0	0	0		RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant;RBM14|p.K594Rfs*15|1|0.67|ENSG00000239306|chr11:66625653-66625653|A/-|frameshift_variant;ENSG00000239306|ENST00000310137|RBM14	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.22308349609375	2	477.223485	952.432418	0.3869	0.00018464	-1.3849	-0.0006609	-0.99798	-0.00047626	477.22287119378336	29.533	0.1421	29.533	29.485	29.627	0					6	3	2	0	0	0	0.071197	1	10570	10570		87.754	26.782	1	237070			49782	7920	32877	33018	50415	50415					-0.045701406252760535
YAARARLL	8	Unmodified	_YAARARLL_					0	0	0		ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.2845458984375	2	467.285069	932.555585	-1.0008	-0.00046768	0.1847	8.6307E-05	-0.81614	-0.00038137	467.2850440426522	24.998	0.2292	24.998	24.873	25.102	0					11	7	2	0	0	0	0.74117	1	7714	7714		28.254	1.4582	1	124260			49783	2516	32878	33019	50416	50416					0.08660903608188164
YAARARLL	8	Unmodified	_YAARARLL_					0	0	0		ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.2847900390625	2	467.285069	932.555585	0.61668	0.00028817	0.048256	2.2549E-05	0.66494	0.00031071	467.2843561910777	25.135	0.75202	25.135	24.611	25.364	0					29	15	3	0	0	0	0.67475	1	8786	8786		37.028	3.5129	1	887800			49784	2516	32878	33019	50417	50417					0.08660903608188164
YAATIASKL	9	Unmodified	_YAATIASKL_					0	0	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	469.27130126953125	2	469.271293	936.528032	-0.43306	-0.00020322	0.35904	0.00016849	-0.074024	-3.4737E-05	469.27156325553744	32.708	0.11828	32.708	32.638	32.757	0					8	4	2	0	0	0	0.12834	1	10588	10588		72.879	28.502	1	63360			49785	2177	32879	33020	50418	50418					0.057229555572689605
YAATIASKL	9	Unmodified	_YAATIASKL_					0	0	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.2705383300781	2	469.271293	936.528032	-1.1721	-0.00055003	0.50987	0.00023927	-0.66223	-0.00031076	469.27149716364625	32.74	0.1477	32.74	32.683	32.831	0					8	5	2	0	0	0	0.078509	1	10960	10960		85.161	32.224	1	165030			49786	2177	32879	33020	50419	50419					0.057229555572689605
YAATIASKL	9	Unmodified	_YAATIASKL_					0	0	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2704162597656	2	469.271293	936.528032	-0.66816	-0.00031355	-0.49347	-0.00023157	-1.1616	-0.00054512	469.27108249030806	32.73	0.11572	32.73	32.659	32.774	0					6	3	2	0	0	0	0.085655	1	11406	11406		82.75	26.029	1	90701			49787	2177	32879	33020	50420	50420					0.057229555572689605
YAATIASKL	9	Unmodified	_YAATIASKL_					0	0	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.2705383300781	2	469.271293	936.528032	-2.1933	-0.0010293	1.6746	0.00078585	-0.51869	-0.00024341	469.2719610385645	32.724	0.15557	32.724	32.65	32.805	0					7	4	2	0	0	0	0.44593	1	11432	11432		37.812	2.6108	1	152680			49788	2177	32879	33020	50421	50421					0.057229555572689605
YAATIASKL	9	Unmodified	_YAATIASKL_					0	0	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.2713317871094	2	469.271293	936.528032	0.54823	0.00025727	-0.83105	-0.00038999	-0.28282	-0.00013272	469.2709440667943	32.918	0.21818	32.918	32.754	32.972	0					6	4	2	0	0	0	0.022525	1	12465	12465		117.81	40.493	1	751000			49789	2177	32879	33020	50422	50422					0.057229555572689605
YAATSRQL	8	Unmodified	_YAATSRQL_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.2430725097656	2	455.243067	908.47158	-1.1212	-0.00051044	0.5166	0.00023518	-0.60464	-0.00027526	455.2434425181503	22.46	0.1869	22.46	22.355	22.542	0					9	5	3	0	0	0	0.2498	1	6616	6616		101.6	24.827	1	177990			49790	2554	32880	33021	50423	50423					0.013683277206155253
YAATSRQL	8	Unmodified	_YAATSRQL_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.242919921875	2	455.243067	908.47158	0.12153	5.5327E-05	-0.97798	-0.00044522	-0.85645	-0.00038989	455.24278859647103	22.52	0.1475	22.52	22.471	22.618	0					5	3	2	0	0	0	0.37144	1	6737	6737		74.255	24.813	1	110080			49791	2554	32880	33021	50424	50424					0.013683277206155253
YAAYHVFF	8	Unmodified	_YAAYHVFF_					0	0	0		ENST00000536219.5_1_12:64173626-64178865:+|nuORF;ENSG00000118600|ENST00000261234|RXYLT1	ENST00000536219.5_1_12:64173626-64178865:+|nuORF	ENST00000536219.5_1_12:64173626-64178865:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2473449707031	2	509.245078	1016.4756	0.93536	0.00047633	2.2326	0.0011369	3.168	0.0016133	509.24650104214993	27.975	1.2818	27.975	27.293	28.575	0					86	31	5	0	0	0	0.70073	1	9743	9743		33.493	3.6514	1	1167100			49792	3081	32881	33022	50425	50425					-0.03197582785674058
YACEVTHQGL	10	Unmodified	_YACEVTHQGL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	560.759033203125	2	560.758223	1119.50189	1.2789	0.00071714	-0.61165	-0.00034299	0.66722	0.00037415	560.7579368835354	30.924	0.60272	30.924	30.796	31.399	0					65	24	4	0	0	0	0.0090663	3	9871	9871;10026;10043		146.79	91.281	1	782690			49793	11727	32882	33023	50426;50427;50428	50426					-0.05307681676504217
YACEVTHQGL	10	Unmodified	_YACEVTHQGL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.758544921875	2	560.758223	1119.50189	0.4885	0.00027393	0.38737	0.00021722	0.87586	0.00049115	560.7582933481876	31.16	0.7135	31.16	30.982	31.696	0					56	17	4	0	0	0	0.0068485	3	11280	11280;11475;11512		159.28	87.98	1	3513400			49794	11727	32882	33023	50429;50430;50431	50429					-0.05307681676504217
YACEVTHQGL	10	Unmodified	_YACEVTHQGL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.7589721679688	2	560.758223	1119.50189	0.12645	7.0907E-05	0.45361	0.00025436	0.58005	0.00032527	560.7586126434296	30.952	0.70032	30.952	30.806	31.506	0					81	26	4	0	0	0	0.0068485	2	10185	10185;10369		159.28	87.98	1	1019600			49795	11727	32882	33023	50432;50433	50432					-0.05307681676504217
YACEVTHQGL	10	Unmodified	_YACEVTHQGL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7586669921875	2	560.758223	1119.50189	1.8142	0.0010173	-0.67929	-0.00038092	1.1349	0.0006364	560.7580162356209	31.159	1.8572	31.159	31.027	32.885	0					93	42	4	0	0	0	0.0090663	2	11698	11698;11901		146.79	77.999	1	4835200			49796	11727	32882	33023	50434;50435	50434					-0.05307681676504217
YACEVTHQGL	10	Unmodified	_YACEVTHQGL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7586669921875	2	560.758223	1119.50189	-0.031377	-1.7595E-05	0.73106	0.00040995	0.69968	0.00039235	560.7586870698514	31.166	0.40989	31.166	31.061	31.471	0					19	9	3	0	0	0	0.047644	1	11716	11716		110.12	60.678	1	251140			49797	11727	32882	33023	50436	50436					-0.05307681676504217
YACEVTHQGL	10	Unmodified	_YACEVTHQGL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	560.7587280273438	2	560.758223	1119.50189	1.0281	0.00057654	0.21752	0.00012198	1.2457	0.00069852	560.7584360346964	30.907	0.34551	30.907	30.864	31.21	0					13	9	2	0	0	0	0.24256	1	10615	10615		74.255	21.956	1	87993			49798	11727	32882	33023	50437	50437					-0.05307681676504217
YACEVTHQGL	10	Unmodified	_YACEVTHQGL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7586669921875	2	560.758223	1119.50189	1.8103	0.0010151	1.6256	0.00091156	3.4359	0.0019267	560.7600819447218	31.164	1.4519	31.164	30.517	31.969	0					56	29	4	0	0	0	0.01215	1	11587	11587		134.77	60.511	1	800300			49799	11727	32882	33023	50438	50438					-0.05307681676504217
YADETLPIN	9	Unmodified	_YADETLPIN_					0	0	0			REV__ENST00000581682.1_1_17:11787806-11828539:+|nuORF	REV__ENST00000581682.1_1_17:11787806-11828539:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	518.2548217773438	2	518.253297	1034.49204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.728	1	18.728	18.228	19.228	0								0	0	0	0.29774	1	4945	4945		35.618	6.4687	1		+		49800	20458	32883	33024	50439	50439					-0.02382546410217401
YADLSKLFHI	10	Unmodified	_YADLSKLFHI_					0	0	0			REV__AADACL3|p.Q198Kfs*14|6|0.23|ENSG00000188984|chr1:12725526-12725526|T/-|frameshift_variant	REV__AADACL3|p.Q198Kfs*14|6|0.23|ENSG00000188984|chr1:12725526-12725526|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	402.88726806640625	3	402.888763	1205.64446	-0.59161	-0.00023835	-2.8108	-0.0011325	-3.4024	-0.0013708	402.88740986821057	19.846	0.22001	19.846	19.741	19.961	0					11	4	3	0	0	0	0.50881	1	6223	6223		44.377	5.6631	1	254200	+		49801	12018	32884	33025	50440	50440					0.049862740572052644
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2384643554688	2	525.237981	1048.46141	1.8898	0.00099261	-3.0809	-0.0016182	-1.1911	-0.0006256	525.2374845455545	30.692	0.40208	30.692	30.526	30.928	0					14	9	2	0	0	0	0.30951	1	11112	11112		49.442	7.0454	1	292630			49802	3106	32885	33026	50441	50441					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2378540039062	2	525.237981	1048.46141	0.59471	0.00031236	0.10795	5.67E-05	0.70266	0.00036906	525.2379923200469	30.512	0.1794	30.512	30.415	30.595	0					9	6	2	0	0	0	0.45358	1	10050	10050		37.159	6.6555	1	41842			49803	3106	32885	33026	50442	50442					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2383422851562	2	525.237981	1048.46141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.534	1	30.534	30.034	31.034	0								0	0	0	0.29774	1	10410	10410		35.618	6.4687	1				49804	3106	32885	33026	50443	50443					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.2384643554688	2	525.237981	1048.46141	1.6269	0.00085452	-0.46404	-0.00024373	1.1629	0.00061079	525.2376228047102	30.677	0.35747	30.677	30.474	30.831	0					19	7	4	0	0	0	0.098791	1	11397	11397		79.713	46.9	1	585310			49805	3106	32885	33026	50444	50444					-0.060882800046329066
YADRRGKQL	9	Unmodified	_YADRRGKQL_					0	0	0		nc|ENSG00000142606|Q495T6-3|MMEL1;ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-2|MMEL1;MMEL1|p.R57H|1|0.29|ENSG00000142606|chr1:2612189-2612189|C/T|missense_variant	nc|ENSG00000142606|Q495T6-3|MMEL1	nc|ENSG00000142606|Q495T6-3|MMEL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.8092651367188	2	553.806897	1105.59924	3.6181	0.0020038	-0.84142	-0.00046598	2.7767	0.0015378	553.8066125951457	40.579	0.37228	40.579	40.376	40.748	0					24	8	4	0	0	0	0.35045	1	16090	16090		45.952	1.5748	1	925590			49806	4500	32886	33027	50445	50445					0.050664683146806055
YADVGGKQF	9	Unmodified	_YADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	492.7423095703125	2	492.742899	983.471246	-0.071875	-3.5416E-05	-0.45532	-0.00022435	-0.52719	-0.00025977	492.742739379346	28.66	0.32043	28.66	28.592	28.912	0					35	12	4	0	0	0	0.012231	1	8957	8957		136.27	50.909	1	1075200			49807	6821	32887	33028	50446	50446					-0.021150919992237505
YADVGGKQF	9	Unmodified	_YADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.742431640625	2	492.742899	983.471246	-0.52544	-0.00025891	0.19676	9.695E-05	-0.32868	-0.00016196	492.7429738625948	28.926	0.81723	28.926	28.796	29.614	0					48	20	4	0	0	0	0.0040894	2	10262	10262;10281		162.25	77.337	1	6652600			49808	6821	32887	33028	50447;50448	50447					-0.021150919992237505
YADVGGKQF	9	Unmodified	_YADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	492.7433776855469	2	492.742899	983.471246	-1.2663	-0.00062394	1.9768	0.00097404	0.71051	0.0003501	492.7438632940265	28.681	0.44952	28.681	28.574	29.023	0					63	17	6	0	0	0	0.026538	1	9249	9249		112.41	35.637	1	1952300			49809	6821	32887	33028	50449	50449					-0.021150919992237505
YADVGGKQF	9	Unmodified	_YADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.7427062988281	2	492.742899	983.471246	0.60944	0.0003003	0.46242	0.00022786	1.0719	0.00052815	492.7432038227331	28.927	0.56952	28.927	28.812	29.381	0					47	12	6	0	0	0	0.0071053	1	10660	10660		148.99	24.393	1	8351200			49810	6821	32887	33028	50450	50450					-0.021150919992237505
YADVGGKQF	9	Unmodified	_YADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.742919921875	2	492.742899	983.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.703	1	28.703	28.203	29.203	0								0	0	0	0.18645	1	9562	9562		52.937	5.0211	1				49811	6821	32887	33028	50451	50451					-0.021150919992237505
YADVGGKQF	9	Unmodified	_YADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.74298095703125	2	492.742899	983.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.876	1	28.876	28.376	29.376	0								0	0	0	0.018912	1	10512	10512		101.25	34.823	1				49812	6821	32887	33028	50452	50452					-0.021150919992237505
YAELITQRE	9	Unmodified	_YAELITQRE_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	562.2971801757812	2	561.793121	1121.57169	3.47	0.0019494	0.8098	0.00045494	4.2798	0.0024043	561.7934636973632	46.608	0.22458	46.608	46.509	46.734	0					26	10	3	0	0	0	0.21263	1	18627	18627		60.118	7.1816	1	402940	+		49813	17153	32888	33029	50453	50453					0.0157652026375672
YAEMGTRTF	9	Unmodified	_YAEMGTRTF_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2;ENST00000467305.1_1_13:96637506-96665674:-|nuORF	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2484130859375	2	538.247492	1074.48043	0.23243	0.0001251	1.5126	0.00081415	1.745	0.00093925	538.2483274748265	31.919	0.20745	31.919	31.811	32.018	0					12	5	3	0	0	0	0.16806	1	11685	11685		65.465	19.493	1	159350			49814	2180	32889	33030	50454	50454					-0.053830667052125136
YAEMGTRTF	9	Unmodified	_YAEMGTRTF_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2;ENST00000467305.1_1_13:96637506-96665674:-|nuORF	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	538.2447509765625	2	538.247492	1074.48043	-0.24647	-0.00013266	-1.9048	-0.0010252	-2.1513	-0.0011579	538.2466969608207	31.711	0.2771	31.711	31.584	31.861	0					18	11	3	0	0	0	0.15558	1	10516	10516		66.962	14.025	1	125110			49815	2180	32889	33030	50455	50455					-0.053830667052125136
YAEMGTRTF	9	Unmodified	_YAEMGTRTF_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2;ENST00000467305.1_1_13:96637506-96665674:-|nuORF	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	538.2481689453125	2	538.247492	1074.48043	-1.4473	-0.00077901	1.4018	0.00075453	-0.045481	-2.448E-05	538.248337215655	31.702	0.1593	31.702	31.619	31.778	0					8	4	2	0	0	0	0.048471	1	10935	10935		95.815	23.938	1	132620			49816	2180	32889	33030	50456	50456					-0.053830667052125136
YAEQVQAVF	9	Unmodified	_YAEQVQAVF_					0	0	0			REV__ENST00000417323.1_1_13:77601239-77601308:-|nuORF	REV__ENST00000417323.1_1_13:77601239-77601308:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7640991210938	2	527.763832	1053.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.805	1	32.805	32.305	33.305	0								0	0	0	0.21054	1	11445	11445		49.442	1.5259	1		+		49817	19040	32890	33031	50457	50457					-0.011505363107289668
YAETIAHIL	9	Unmodified	_YAETIAHIL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7819213867188	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.73	1	42.73	42.23	43.23	0								0	0	0	0.082189	1	17071	17071		76.847	16.553	1				49818	8000	32891	33032	50458	50458					0.035903405860153725
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	453.7557373046875	2	453.75581	905.497067	-0.00076831	-3.4863E-07	-0.71106	-0.00032265	-0.71183	-0.000323	453.7555232068578	32.701	0.51221	32.701	32.604	33.117	0					53	21	4	0	0	0	0.29286	2	10570	10570;10705		84.916	15.802	1	3461500			49819	3724;154	32892	33033	50459;50460	50459					0.04053802243049631
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	453.7554931640625	2	453.75581	905.497067	-1.1878	-0.00053897	0.30351	0.00013772	-0.88429	-0.00040125	453.75600326205506	32.769	0.51101	32.769	32.657	33.168	0					46	20	4	0	0	0	0.25873	2	10936	10936;11073		96.19	24.895	1	2195400			49820	3724;154	32892	33033	50461;50462	50461					0.04053802243049631
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7557373046875	2	453.75581	905.497067	-0.12543	-5.6914E-05	-0.67785	-0.00030758	-0.80328	-0.00036449	453.75549130505107	32.98	0.47756	32.98	32.849	33.326	0					36	11	5	0	0	0	0.24806	2	12548	12548;12718		104.75	27.972	1	11949000			49821	3724;154	32892	33033	50463;50464	50463					0.04053802243049631
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	453.7554626464844	2	453.75581	905.497067	0.72117	0.00032724	-1.7112	-0.00077646	-0.99002	-0.00044923	453.75512024153227	32.969	0.61432	32.969	32.834	33.448	0					38	14	4	0	0	0	0.2678	1	12562	12562		93.195	16.421	1	12639000			49822	3724;154	32892	33033	50465	50465					0.04053802243049631
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7555236816406	2	453.75581	905.497067	0.035192	1.5969E-05	-0.81895	-0.0003716	-0.78376	-0.00035563	453.7554512754794	32.731	0.46961	32.731	32.63	33.1	0					37	13	4	0	0	0	0.24806	1	11401	11401		104.75	27.972	1	2890400			49823	3724;154	32892	33033	50466	50466					0.04053802243049631
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7557678222656	2	453.75581	905.497067	-2.6222	-0.0011899	1.9096	0.00086651	-0.71261	-0.00032335	453.75679001932593	32.755	0.23906	32.755	32.65	32.889	0					9	6	2	0	0	0	0.39125	1	11413	11413		71.877	10.906	1	95298			49824	3724;154	32892	33033	50467	50467					0.04053802243049631
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.7555847167969	2	453.75581	905.497067	-0.41838	-0.00018984	-0.15406	-6.9904E-05	-0.57244	-0.00025975	453.75575310879213	32.934	0.54539	32.934	32.771	33.317	0					38	11	4	0	0	0	0.2678	1	12447	12447		93.195	16.421	1	16719000			49825	3724;154	32892	33033	50468	50468					0.04053802243049631
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	453.75604248046875	2	453.75581	905.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.286	1	33.286	32.786	33.786	0								0	0	0	1.7419	1	12638	12638		60.972	5.4677	1				49826	3724;154	32892	33033	50469	50469					0.04053802243049631
YAFEGTAGRF	10	Unmodified	_YAFEGTAGRF_					0	0	0		ENSG00000163762|ENST00000296059|TM4SF18	ENSG00000163762|ENST00000296059|TM4SF18	ENSG00000163762|ENST00000296059|TM4SF18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	559.7676391601562	2	559.766906	1117.51926	1.2842	0.00071885	-0.94027	-0.00052633	0.34393	0.00019252	559.7666779333973	34.556	0.28362	34.556	34.462	34.745	0					23	12	3	0	0	0	0.47859	1	11287	11287		47.657	3.2801	1	76796			49827	5606	32893	33034	50470	50470					-0.034800180791762614
YAFNFEMY	8	Unmodified	_YAFNFEMY_					0	0	0		ENST00000337179.9_1_12:93795963-93796278:+|nuORF	ENST00000337179.9_1_12:93795963-93796278:+|nuORF	ENST00000337179.9_1_12:93795963-93796278:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.723876953125	2	542.725861	1083.43717	-0.1694	-9.194E-05	-2.7729	-0.0015049	-2.9423	-0.0015968	542.7245476660582	33.255	0.18241	33.255	33.178	33.361	0					11	7	2	0	0	0	0.70055	1	11139	11139		33.516	4.366	1	110140			49828	8700	32894	33035	50471	50471					-0.10121256482489116
YAFPKAVSV	9	Unmodified	_YAFPKAVSV_					0	0	0		ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF;ENSG00000141526|ENST00000582743|SLC16A3	ENST00000581642.1_1_17:80193878-80194172:+|nuORF	ENST00000581642.1_1_17:80193878-80194172:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.27362060546875	2	491.273835	980.533118	0.79988	0.00039296	-0.98429	-0.00048356	-0.18441	-9.0596E-05	491.2738721073075	39.164	0.1908	39.164	39.11	39.301	0					7	4	2	0	0	0	0.35021	1	15469	15469		45.972	1.4412	1	182950			49829	4455	32895	33036	50472	50472					0.04207259419899856
YAGYPHIHF	9	Unmodified	_YAGYPHIHF_					0	0	0		tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7683715820312	2	552.766709	1103.51886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.549	1	39.549	39.049	40.049	0								0	0	0	0.28056	1	15063	15063		39.021	2.5747	1				49830	22798	32896	33037	50473	50473					-0.028753930083894375
YAHPSGTAL	9	Unmodified	_YAHPSGTAL_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	458.729736328125	2	458.729792	915.445031	-0.65404	-0.00030003	0.094302	4.3259E-05	-0.55974	-0.00025677	458.72981203737976	25.098	0.39759	25.098	24.891	25.289	0					20	9	3	0	0	0	0.097811	1	8502	8502		79.939	16.633	1	874200			49831	7375	32897	33038	50474	50474					-0.016073611707156488
YAIDRYASF	9	Unmodified	_YAIDRYASF_					0	0	0		tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7711181640625	2	553.269281	1104.52401	1.8191	0.0010065	-0.98304	-0.00054389	0.83606	0.00046257	553.7698866266182	41.598	0.2093	41.598	41.439	41.648	0					7	5	2	0	0	0	0.24095	1	16572	16572		56.721	0	1	89741			49832	22671	32898	33039	50475	50475					-0.024071339364581945
YAIGNAPEL	9	Unmodified	_YAIGNAPEL_					0	0	0		ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2448425292969	2	474.245275	946.475997	2.3639	0.0011211	-2.4743	-0.0011734	-0.11037	-5.2343E-05	474.24408424248725	43.537	0.18826	43.537	43.437	43.625	0					11	6	2	0	0	0	0.1236	1	17419	17419		73.975	11.867	1	96131			49833	5627	32899	33040	50476	50476					0.0006179214351504925
YAIIPMHQ	8	Unmodified	_YAIIPMHQ_					0	0	0			REV__ZDHHC13|p.W358Lfs*13|1|0.28|ENSG00000177054|chr11:19158998-19158999|-/T|frameshift_variant	REV__ZDHHC13|p.W358Lfs*13|1|0.28|ENSG00000177054|chr11:19158998-19158999|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	486.7487487792969	2	486.752213	971.489873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.244	1	13.244	12.744	13.744	0								0	0	0	1.7419	1	2651	2651		9.4706	0.64823	1		+		49834	16684	32900	33041	50477	50477					0.002987463709587246
YAIKANSLK	9	Unmodified	_YAIKANSLK_					0	0	0			REV__GJC1|p.E303K|1|0.38|ENSG00000182963|chr17:44804911-44804911|C/T|missense_variant	REV__GJC1|p.E303K|1|0.38|ENSG00000182963|chr17:44804911-44804911|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2976989746094	2	504.297842	1006.58113	1.0284	0.00051863	-0.77264	-0.00038964	0.25577	0.00012899	504.29754021035154	43.514	0.85709	43.514	43.21	44.067	0					58	45	2	0	0	0	0.27249	1	16927	16927		52.937	6.9645	1	76344	+		49835	20692	32901	33042	50478	50478					0.07810333339944009
YAIKDGGLCF	10	Unmodified	_YAIKDGGLCF_					0	0	0		HHIP|p.R173I|1|0.39|ENSG00000164161|chr4:144658835-144658835|G/T|missense_variant	HHIP|p.R173I|1|0.39|ENSG00000164161|chr4:144658835-144658835|G/T|missense_variant	HHIP|p.R173I|1|0.39|ENSG00000164161|chr4:144658835-144658835|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7657470703125	2	543.76806	1085.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.568	1	28.568	28.068	29.068	0								0	0	0	0.27541	1	9226	9226		54.776	3.4409	1				49836	11207	32902	33043	50479	50479					-0.01777305665723361
YAIQAMCIR	9	Unmodified	_YAIQAMCIR_					0	0	0			REV__ENSG00000214717|ENST00000652001|ZBED1	REV__ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.7719116210938	2	534.77008	1067.52561	3.3735	0.0018041	0.70798	0.00037861	4.0815	0.0021827	534.7702134149556	35.078	0.76611	35.078	34.7	35.466	0					45	15	4	0	0	0	0.25109	2	13485	13463;13485		55.504	0.72789	1	2588100	+		49837	17584	32903	33044	50480;50481	50481					-0.005455394436921779
YAKAIGRI	8	Unmodified	_YAKAIGRI_					0	0	0			REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1	REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	446.274658203125	2	446.27417	890.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.9	1	32.9	32.4	33.4	0								0	0	0	1.7419	1	11011	11011		31.955	7.7521	1		+		49838	22086	32904	33045	50482	50482					0.08414098859623209
YAKEAQQSL	9	Unmodified	_YAKEAQQSL_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.26708984375	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.875	1	21.875	21.375	22.375	0								0	0	0	0.27521	1	6420	6420		40.058	2.2467	1				49839	4545	32905	33046	50483	50483					0.002125622009543804
YAKFTNNH	8	Unmodified	_YAKFTNNH_					0	0	0			REV__ENSG00000154856|ENST00000355285|APCDD1	REV__ENSG00000154856|ENST00000355285|APCDD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.74041748046875	2	497.740691	993.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.094	1	25.094	24.594	25.594	0								0	0	0	1.7419	1	8865	8865		53.351	3.3269	1		+		49840	15579	32906	33047	50484	50484					-0.030165564221533714
YAKNGQDL	8	Unmodified	_YAKNGQDL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	454.7273254394531	2	454.727249	907.439946	-0.36056	-0.00016395	0.18521	8.422E-05	-0.17535	-7.9735E-05	454.72725138359795	19.254	0.11162	19.254	19.186	19.297	0					5	3	2	0	0	0	0.48092	1	4937	4937		62.107	17.991	1	121640			49841	5043	32907	33048	50485	50485					-0.01747665033337853
YAKNGQDL	8	Unmodified	_YAKNGQDL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	454.7269592285156	2	454.727249	907.439946	-1.1486	-0.00052231	1.1529	0.00052424	0.0042408	1.9284E-06	454.7274445718685	19.245	0.10767	19.245	19.215	19.322	0					6	3	2	0	0	0	0.53424	1	5185	5185		56.721	8.8055	1	56752			49842	5043	32907	33048	50486	50486					-0.01747665033337853
YALATSLQY	9	Unmodified	_YALATSLQY_					0	0	0			REV__nc|ENSG00000169398|Q05397-4|PTK2	REV__nc|ENSG00000169398|Q05397-4|PTK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.2666625976562	2	515.266207	1028.51786	1.4978	0.00077175	-0.90307	-0.00046532	0.5947	0.00030643	515.265800828308	32.918	0.35335	32.918	32.706	33.059	0					11	7	2	0	0	0	0.13267	1	12464	12464		71.877	9.7701	1	1095800	+		49843	16311	32908	33049	50487	50487					0.004743478320506256
YALKGERLV	9	Unmodified	_YALKGERLV_					0	0	0		ENST00000490450.5_1_21:46197196-46221244:-|nuORF	ENST00000490450.5_1_21:46197196-46221244:-|nuORF	ENST00000490450.5_1_21:46197196-46221244:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.8117065429688	2	524.811116	1047.60768	1.6139	0.00084701	-0.041024	-2.153E-05	1.5729	0.00082548	524.811028077	27.396	0.18051	27.396	27.262	27.443	0					6	4	2	0	0	0	0.59802	1	8966	8966		21.96	0	1	36512			49844	10062	32909	33050	50488	50488					0.08578022231267823
YALKPPPVP	9	Unmodified	_YALKPPPVP_					0	0	0		ENSG00000180383|ENST00000317676|DEFB124	ENSG00000180383|ENST00000317676|DEFB124	ENSG00000180383|ENST00000317676|DEFB124	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.29400634765625	2	491.292028	980.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.925	1	27.925	27.425	28.425	0								0	0	0	0.3119	1	8950	8950		25.45	0	1				49845	6803	32910	33051	50489	50489					0.07844136316612094
YALKQSSILNQ	11	Unmodified	_YALKQSSILNQ_					0	0	0		ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	632.8485717773438	2	632.848427	1263.6823	1.0777	0.00068204	-1.1287	-0.00071429	-0.050963	-3.2252E-05	632.8476035819713	35.747	0.23854	35.747	35.664	35.903	0					12	6	3	0	0	0	0.14858	1	13437	13437		80.455	5.4113	1	327680			49846	7620	32911	33052	50490	50490					0.06100740252009018
YALPAPAGV	9	Unmodified	_YALPAPAGV_					0	0	0			REV__ENSG00000174607|ENST00000310836|UGT8	REV__ENSG00000174607|ENST00000310836|UGT8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.74139404296875	2	429.739628	857.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.908	1	19.908	19.408	20.408	0								0	0	0	0.28056	1	5474	5474		39.021	0.21535	1		+		49847	16574	32912	33053	50491	50491					0.03027014840040465
YALQVHCY	8	Carbamidomethyl (C)	_YALQVHC(Carbamidomethyl (C))Y_	YALQVHC(1)Y		YALQVHC(91)Y		0	1	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2451782226562	2	527.244752	1052.47495	0.32452	0.0001711	1.0406	0.00054863	1.3651	0.00071973	527.2455111800269	33.451	0.12975	33.451	33.385	33.515	0					10	5	3	0	0	0	0.27463	1	11226	11226		90.939	30.645	1	69907			49848	2620	32913	33054	50492	50492	104				-0.04918745497047894
YALQVHCY	8	Carbamidomethyl (C)	_YALQVHC(Carbamidomethyl (C))Y_	YALQVHC(1)Y		YALQVHC(130)Y		0	1	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2452392578125	2	527.244752	1052.47495	1.7574	0.00092657	0.55076	0.00029039	2.3082	0.001217	527.2443970590177	33.634	0.39407	33.634	33.296	33.69	0					15	9	3	0	0	0	0.2364	1	12892	12892		134.12	67.69	1	342420			49849	2620	32913	33054	50493	50493	104				-0.04918745497047894
YALQVHCY	8	Carbamidomethyl (C)	_YALQVHC(Carbamidomethyl (C))Y_	YALQVHC(1)Y		YALQVHC(75)Y		0	1	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.245361328125	2	527.244752	1052.47495	1.2296	0.00064828	-0.8025	-0.00042312	0.42706	0.00022517	527.2442453663889	33.43	0.11305	33.43	33.35	33.463	0					5	3	2	0	0	0	0.36926	1	11734	11734		74.517	37.357	1	49803			49850	2620	32913	33054	50494	50494	104				-0.04918745497047894
YALQVHCY	8	Carbamidomethyl (C)	_YALQVHC(Carbamidomethyl (C))Y_	YALQVHC(1)Y		YALQVHC(120)Y		0	1	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2452392578125	2	527.244752	1052.47495	1.6285	0.00085864	-0.73835	-0.00038929	0.89019	0.00046935	527.2444363517563	33.591	0.21629	33.591	33.483	33.7	0					13	4	4	0	0	0	0.23567	1	12796	12796		119.22	64.445	1	655890			49851	2620	32913	33054	50495	50495	104				-0.04918745497047894
YALRSLRIE	9	Unmodified	_YALRSLRIE_					0	0	0		nc|ENSG00000090857|Q8NCN5-2|PDPR;PDPR|p.E826Kfs*5|1|0.12|ENSG00000090857|chr16:70156711-70156711|G/-|frameshift_variant;ENSG00000090857|ENST00000288050|PDPR	nc|ENSG00000090857|Q8NCN5-2|PDPR	nc|ENSG00000090857|Q8NCN5-2|PDPR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.2660522460938	2	560.827298	1119.64004	-0.029796	-1.671E-05	0.37646	0.00021113	0.34666	0.00019442	560.827450971431	31.418	0.28939	31.418	31.316	31.605	0					15	6	3	0	0	0	0.55379	1	11918	11918		26.693	0	1	622090			49852	1842	32914	33055	50496	50496					0.08500809634256257
YAMKAEVL	8	Unmodified	_YAMKAEVL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	462.74652099609375	2	462.746596	923.478639	0.67929	0.00031434	-1.367	-0.00063257	-0.6877	-0.00031823	462.7458233292734	34.221	0.23988	34.221	34.105	34.345	0					14	6	3	0	0	0	0.51384	1	12722	12722		58.782	12.83	1	270790			49853	6970	32915	33056	50497	50497					0.013839242768312943
YAMKAEVL	8	Unmodified	_YAMKAEVL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	462.74609375	2	462.746596	923.478639	-0.14571	-6.7428E-05	-1.3064	-0.00060454	-1.4521	-0.00067197	462.7459305218901	34.23	0.17723	34.23	34.146	34.323	0					8	4	3	0	0	0	0.37144	1	13167	13167		74.255	16.444	1	206470			49854	6970	32915	33056	50498	50498					0.013839242768312943
YAMKAEVL	8	Unmodified	_YAMKAEVL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	462.7464599609375	2	462.746596	923.478639	-0.47207	-0.00021845	-0.13303	-6.1559E-05	-0.6051	-0.00028001	462.74659225351434	34.158	0.25701	34.158	34.053	34.31	0					12	5	3	0	0	0	0.37144	1	13072	13072		74.255	22.92	1	273270			49855	6970	32915	33056	50499	50499					0.013839242768312943
YANEELTSK	9	Unmodified	_YANEELTSK_					0	0	0			REV__ENST00000533425.5_1_11:8737213-8772268:-|nuORF	REV__ENST00000533425.5_1_11:8737213-8772268:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.757568359375	2	527.756204	1053.49785	2.1442	0.0011316	-0.64298	-0.00033934	1.5012	0.00079225	527.7559032460646	20.705	0.67277	20.705	20.433	21.106	0					39	15	3	0	0	0	0.38666	1	6505	6505		42.864	2.0861	1	513550	+		49856	16122	32916	33057	50500	50500					-0.02675447898582206
YANIGKTL	8	Unmodified	_YANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	440.2503356933594	2	440.25036	878.486168	0.28244	0.00012434	-0.18682	-8.2248E-05	0.095615	4.2094E-05	440.25020587926264	29.552	0.15532	29.552	29.497	29.653	0					7	5	2	0	0	0	0.3049	1	9333	9333		82.241	14.747	1	126560			49857	2941	32917	33058	50501	50501					0.04206399868758126
YANIGKTL	8	Unmodified	_YANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.2499694824219	2	440.25036	878.486168	0.5601	0.00024659	-1.0722	-0.00047205	-0.51212	-0.00022546	440.2498116269671	29.858	0.2103	29.858	29.734	29.944	0					13	5	3	0	0	0	0.36488	1	10698	10698		75.043	25.602	1	398770			49858	2941	32917	33058	50502	50502					0.04206399868758126
YANIGKTL	8	Unmodified	_YANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	440.25030517578125	2	440.25036	878.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.826	1	29.826	29.326	30.326	0								0	0	0	1.7419	1	10691	10691		101.6	10.824	1				49859	2941	32917	33058	50503	50503					0.04206399868758126
YANIGKTL	8	Unmodified	_YANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	440.2500915527344	2	440.25036	878.486168	-1.0401	-0.00045792	0.5805	0.00025557	-0.45964	-0.00020236	440.2505437052871	29.594	0.16934	29.594	29.511	29.68	0					11	6	2	0	0	0	0.44767	1	9642	9642		65.465	7.6541	1	199340			49860	2941	32917	33058	50504	50504					0.04206399868758126
YANIGKTL	8	Unmodified	_YANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	440.2501220703125	2	440.25036	878.486168	0.57914	0.00025497	-1.4278	-0.00062861	-0.84871	-0.00037364	440.24977069365	29.809	0.30855	29.809	29.7	30.008	0					13	6	3	0	0	0	0.24681	1	11091	11091		107.01	23.72	1	659470			49861	2941	32917	33058	50505	50505					0.04206399868758126
YANIGKTL	8	Unmodified	_YANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	440.250244140625	2	440.25036	878.486168	-0.57046	-0.00025115	0.27066	0.00011916	-0.2998	-0.00013199	440.25045475491544	29.592	0.12678	29.592	29.539	29.666	0					6	3	2	0	0	0	0.2498	1	9978	9978		101.6	32.814	1	112310			49862	2941	32917	33058	50506	50506					0.04206399868758126
YANKQRSSV	9	Unmodified	_YANKQRSSV_					0	0	0			REV__TAPT1|p.K545Nfs*10|1|0.09|ENSG00000169762|chr4:16163377-16163377|T/-|frameshift_variant	REV__TAPT1|p.K545Nfs*10|1|0.09|ENSG00000169762|chr4:16163377-16163377|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.7798461914062	2	526.777805	1051.54106	3.4668	0.0018262	1.0083	0.00053113	4.4751	0.0023574	526.7782706850926	28.435	0.56408	28.435	28.177	28.741	0					36	11	4	0	0	0	0.43426	1	10267	10267		38.806	38.806	1	2695000	+		49863	16335	32918	33059	50507	50507					0.017347866693853575
YANNAIKTY	9	Unmodified	_YANNAIKTY_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1;ATP8B1|p.P792Hfs*8|1|0.34|ENSG00000081923|chr18:57662528-57662528|A/-|frameshift_variant;ATP8B1|p.I809Nfs*11|1|0.61|ENSG00000081923|chr18:57661455-57661456|-/T|frameshift_variant;ATP8B1|p.N205Kfs*2|1|0.26|ENSG00000081923|chr18:57697807-57697808|-/T|frameshift_variant	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.2701416015625	2	529.269281	1056.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.258	1	26.258	25.758	26.758	0								0	0	0	0.080575	1	9035	9035		77.318	21.813	1				49864	1666	32919	33060	50508	50508					-0.0019913393641672883
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7661437988281	2	483.766374	965.518196	-0.096942	-4.6897E-05	-0.67502	-0.00032655	-0.77196	-0.00037345	483.7661233387903	26.837	0.61114	26.837	26.727	27.338	0					33	12	5	0	0	0	0.0030642	1	9638	9638		168.26	66.658	1	18590000			49865	5653	32920	33061	50509	50509					0.03405767551907957
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.7663879394531	2	483.766374	965.518196	0.67254	0.00032535	-1.1653	-0.00056371	-0.49272	-0.00023836	483.76587364159116	26.819	0.66197	26.819	26.71	27.372	0					44	13	5	0	0	0	0.0088974	1	9634	9634		143.37	50.178	1	17643000			49866	5653	32920	33061	50510	50510					0.03405767551907957
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7662048339844	2	483.766374	965.518196	-0.26658	-0.00012896	-0.23839	-0.00011533	-0.50497	-0.00024429	483.76627346291065	26.644	0.43806	26.644	26.509	26.947	0					28	10	5	0	0	0	0.0030642	1	8597	8597		168.26	75.063	1	4231700			49867	5653	32920	33061	50511	50511					0.03405767551907957
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7658996582031	2	483.766374	965.518196	-2.9186	-0.0014119	2.5746	0.0012455	-0.34401	-0.00016642	483.7673632169591	26.633	0.19421	26.633	26.539	26.734	0					10	4	3	0	0	0	0.078509	1	8595	8595		85.161	11.186	1	239530			49868	5653	32920	33061	50512	50512					0.03405767551907957
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.76611328125	2	483.766374	965.518196	-0.59095	-0.00028588	0.61757	0.00029876	0.026624	1.288E-05	483.7667581205226	26.766	0.87262	26.766	26.654	27.526	0					44	17	5	0	0	0	0.0030642	1	9480	9480		168.26	75.063	1	20875000			49869	5653	32920	33061	50513	50513					0.03405767551907957
YANSTNGK	8	Unmodified	_YANSTNGK_					0	0	0			REV__ENST00000400000.6_1_18:9955494-9955929:+|nuORF	REV__ENST00000400000.6_1_18:9955494-9955929:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.7056579589844	2	427.703774	853.392996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.301	1	37.301	36.801	37.801	0								0	0	0	1.7419	1	13355	13355		20.482	2.1574	1		+		49870	18941	32921	33062	50514	50514					-0.03956524584464205
YAPFVGGTGPG	11	Unmodified	_YAPFVGGTGPG_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.750732421875	2	511.750724	1021.4869	-1.737	-0.0008889	1.1957	0.00061191	-0.54127	-0.00027699	511.7515918133189	32.798	0.17247	32.798	32.716	32.889	0					7	4	2	0	0	0	0.52516	1	11450	11450		42.396	1.618	1	115180			49871	8071	32922	33063	50515	50515					-0.022988054821666992
YAPKGSSL	8	Unmodified	_YAPKGSSL_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	411.7213134765625	2	411.721436	821.428318	-0.079591	-3.2769E-05	-0.3564	-0.00014674	-0.43599	-0.00017951	411.7213242273655	21.436	0.28981	21.436	21.294	21.584	0					15	6	3	0	0	0	0.5535	1	6182	6182		54.776	1.8396	1	803360			49872	5874	32923	33064	50516	50516					0.010461379433536422
YAPLKEIPP	9	Unmodified	_YAPLKEIPP_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;NKRF|p.R664Dfs*7|1|0.22|ENSG00000186416|chrX:119589435-119589435|T/-|frameshift_variant;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	343.19854736328125	3	343.198937	1026.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.105	1	36.105	35.605	36.605	0								0	0	0	0.3304	1	14039	14039		29.15	8.2026	1				49873	7136	32924	33065	50517	50517					0.06275815108415372
YAPSGNFV	8	Unmodified	_YAPSGNFV_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENST00000470354.1_1_7:100275135-100275402:+|nuORF	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	427.705810546875	2	427.705786	853.397018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.177	1	37.177	36.677	37.677	0								0	0	0	1.7419	1	12183	12183		53.351	7.3995	1				49874	2681	32925	33066	50518	50518					-0.035544350907457556
YAPSGNFV	8	Unmodified	_YAPSGNFV_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENST00000470354.1_1_7:100275135-100275402:+|nuORF	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	427.7059326171875	2	427.705786	853.397018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.597	1	37.597	37.097	38.097	0								0	0	0	1.7419	1	14265	14265		58.782	18.209	1				49875	2681	32925	33066	50519	50519					-0.035544350907457556
YAPSGNFV	8	Unmodified	_YAPSGNFV_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENST00000470354.1_1_7:100275135-100275402:+|nuORF	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	427.705810546875	2	427.705786	853.397018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.319	1	37.319	36.819	37.819	0								0	0	0	1.7419	1	12623	12623		53.351	14.545	1				49876	2681	32925	33066	50520	50520					-0.035544350907457556
YAPSGNFV	8	Unmodified	_YAPSGNFV_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENST00000470354.1_1_7:100275135-100275402:+|nuORF	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	427.70562744140625	2	427.705786	853.397018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.491	1	37.491	36.991	37.991	0								0	0	0	1.7419	1	14668	14668		30.504	0	1				49877	2681	32925	33066	50521	50521					-0.035544350907457556
YAPSGNFV	8	Unmodified	_YAPSGNFV_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENST00000470354.1_1_7:100275135-100275402:+|nuORF	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	427.7056579589844	2	427.705786	853.397018	0.17037	7.2868E-05	-0.028068	-1.2005E-05	0.1423	6.0863E-05	427.7058477610018	37.328	0.32587	37.328	37.137	37.463	0					19	16	2	0	0	0	0.5676	1	13363	13363		53.351	14.545	1	121250			49878	2681	32925	33066	50522	50522					-0.035544350907457556
YAPSGNFV	8	Unmodified	_YAPSGNFV_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENST00000470354.1_1_7:100275135-100275402:+|nuORF	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	427.7056579589844	2	427.705786	853.397018	-0.41176	-0.00017611	0.34085	0.00014579	-0.070901	-3.0325E-05	427.70591998962493	37.618	0.55444	37.618	37.315	37.869	0					22	11	3	0	0	0	0.27512	1	14640	14640		90.777	22.292	1	545650			49879	2681	32925	33066	50523	50523					-0.035544350907457556
YAPSGNYV	8	Unmodified	_YAPSGNYV_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4	ENSG00000078369|ENST00000378609|GNB1	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	435.7032165527344	2	435.703243	869.391933	0.22286	9.7103E-05	-0.61691	-0.00026879	-0.39405	-0.00017169	435.70297926122066	32.083	0.20922	32.083	31.921	32.13	0					14	8	2	0	0	0	0.54629	1	10330	10330		55.504	14.932	1	112080			49880	1600	32926	33067	50524	50524					-0.04798738953365955
YAPSGNYV	8	Unmodified	_YAPSGNYV_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4	ENSG00000078369|ENST00000378609|GNB1	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	435.70294189453125	2	435.703243	869.391933	0.66104	0.00028802	-0.80094	-0.00034897	-0.1399	-6.0954E-05	435.70273094164054	32.383	0.37337	32.383	32.181	32.555	0					14	9	3	0	0	0	0.32815	1	11878	11878		79.451	40.43	1	238880			49881	1600	32926	33067	50525	50525					-0.04798738953365955
YAPSGNYV	8	Unmodified	_YAPSGNYV_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4	ENSG00000078369|ENST00000378609|GNB1	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	435.7036437988281	2	435.703243	869.391933	-0.42941	-0.00018709	0.76331	0.00033258	0.3339	0.00014548	435.70369237436114	32.265	0.2435	32.265	32.142	32.385	0					8	5	2	0	0	0	0.32815	1	12250	12250		79.451	38.878	1	100870			49882	1600	32926	33067	50526	50526					-0.04798738953365955
YAPSGNYV	8	Unmodified	_YAPSGNYV_					0	0	0		ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4	ENSG00000078369|ENST00000378609|GNB1	ENSG00000078369|ENST00000378609|GNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	435.7029724121094	2	435.703243	869.391933	-0.5362	-0.00023362	0.19962	8.6974E-05	-0.33658	-0.00014665	435.7033715196292	32.252	0.42029	32.252	32.17	32.59	0					15	8	3	0	0	0	0.59773	1	12166	12166		49.442	10.635	1	202130			49883	1600	32926	33067	50527	50527					-0.04798738953365955
YAPSGRSL	8	Unmodified	_YAPSGRSL_					0	0	0		ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant;ENSG00000163874|ENST00000373087|ZC3H12A	ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant	ZC3H12A|p.P532Qfs*41|1|0.51|ENSG00000163874|chr1:37483402-37483402|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.7238464355469	2	425.72451	849.434466	-0.22191	-9.4474E-05	0.0053475	2.2766E-06	-0.21657	-9.2197E-05	425.72438901451574	22.848	0.17106	22.848	22.774	22.945	0					8	5	2	0	0	0	0.70598	1	6516	6516		32.812	6.0163	1	104990			49884	5616	32927	33068	50528	50528					0.003726561748521817
YAPSGTPQAVN	11	Unmodified	_YAPSGTPQAVN_					0	0	0		nc|ENSG00000168060|Q9UQQ1-2|NAALADL1	nc|ENSG00000168060|Q9UQQ1-2|NAALADL1	nc|ENSG00000168060|Q9UQQ1-2|NAALADL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.76904296875	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.475	1	50.475	49.975	50.975	0								0	0	0	0.39785	1	19898	19898		28.081	0	1				49885	11638	32928	33069	50529	50529					-0.022883392873836783
YAPSTYAHL	9	Unmodified	_YAPSTYAHL_					0	0	0		LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant;nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7508544921875	2	511.750724	1021.4869	1.4071	0.0007201	-0.90452	-0.00046289	0.50261	0.00025721	511.750192242718	32.964	0.1102	32.964	32.909	33.019	0					4	2	2	0	0	0	0.13483	1	12491	12491		71.378	21.936	1	1154600			49886	2388	32929	33070	50530	50530					-0.022988054821894366
YAPSTYAHL	9	Unmodified	_YAPSTYAHL_					0	0	0		LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant;nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7507019042969	2	511.750724	1021.4869	3.107	0.00159	-2.7419	-0.0014032	0.36513	0.00018685	511.7490856859146	32.995	0.39146	32.995	32.84	33.232	0					18	8	4	0	0	0	0.1236	1	12481	12481		73.975	26.059	1	1594400			49887	2388	32929	33070	50531	50531					-0.022988054821894366
YAPVHADDL	9	Unmodified	_YAPVHADDL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	500.74029541015625	2	500.740357	999.46616	-0.046576	-2.3323E-05	-0.0082145	-4.1133E-06	-0.054791	-2.7436E-05	500.7403956068411	30.537	0.28394	30.537	30.441	30.725	0					20	11	3	0	0	0	0.1236	1	9728	9728		73.975	36.816	1	275780			49888	1351	32930	33071	50532	50532					-0.03359395861855319
YAPVHADDL	9	Unmodified	_YAPVHADDL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7403259277344	2	500.740357	999.46616	-0.13805	-6.9129E-05	-0.12367	-6.1927E-05	-0.26172	-0.00013106	500.740238538638	30.779	0.31365	30.779	30.641	30.955	0					19	7	4	0	0	0	0.077948	1	11124	11124		85.359	35.918	1	2093800			49889	1351	32930	33071	50533	50533					-0.03359395861855319
YAPVHADDL	9	Unmodified	_YAPVHADDL_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	500.7405090332031	2	500.740357	999.46616	-0.99491	-0.00049819	1.0595	0.00053054	0.064594	3.2345E-05	500.7407980294528	30.582	0.3087	30.582	30.474	30.782	0					20	11	2	0	0	0	0.036372	1	10068	10068		102.77	56.821	1	592110			49890	1351	32930	33071	50534	50534					-0.03359395861855319
YAQHGVDF	8	Unmodified	_YAQHGVDF_					0	0	0			REV__tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	REV__tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.7146301269531	2	468.714142	935.413731	-1.139	-0.00053386	0.42159	0.0001976	-0.7174	-0.00033625	468.71429476030147	28.963	1.8205	28.963	28.851	30.672	0					162	68	4	0	0	0	0.75243	1	9862	9862		26.796	26.796	1	6569400	+		49891	21949	32931	33072	50535	50535					-0.05655934204798996
YAQNAKVI	8	Unmodified	_YAQNAKVI_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	453.7554016113281	2	453.75581	905.497067	0.035192	1.5969E-05	-0.81895	-0.0003716	-0.78376	-0.00035563	453.7554512754794	32.731	0.46961	32.731	32.63	33.1	0					37	13	4	0	0	0	0.64096	1	11565	11565		42.474	1.6963	1	2890400			49892	1090	32932	33073	50536	50536					0.04053802243049631
YAREITIVG	9	Unmodified	_YAREITIVG_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.7529296875	2	511.287474	1020.5604	-0.43571	-0.00022277	0.21302	0.00010891	-0.22269	-0.00011386	511.28758637079903	33.943	0.22683	33.943	33.817	34.044	0					9	5	2	0	0	0	0.4966	1	12988	12988		32.812	0	1	380470	+		49893	15668	32933	33074	50537	50537					0.050937429602981865
YARPIRPQ	8	Unmodified	_YARPIRPQ_					0	0	0			REV__ENST00000590758.3_1_17:42883048-42908178:-|nuORF	REV__ENST00000590758.3_1_17:42883048-42908178:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	334.19427490234375	3	334.194409	999.561398	-0.70259	-0.0002348	1.2255	0.00040954	0.52287	0.00017474	334.19477164575335	24.33	0.32893	24.33	24.139	24.468	0					17	10	2	0	0	0	0.75243	1	7414	7414		21.96	0	1	150230	+		49894	20526	32934	33075	50538	50538					0.061600021198501054
YARPLARLL	9	Unmodified	_YARPLARLL_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1;REV__RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant	REV__nc|ENSG00000196218|P21817-2|RYR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	358.22503662109375	3	358.225709	1071.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.304	1	34.304	33.804	34.804	0								0	0	0	0.34907	1	11562	11562		25.574	6.4705	1		+		49895	17234;21482	32935	33076	50539	50539					0.12233721222128224
YARSVHEEF	9	Unmodified	_YARSVHEEF_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.2708129882812	2	569.269813	1136.52507	1.4602	0.00083123	0.40546	0.00023082	1.8656	0.001062	569.269563124962	23.741	0.13344	23.741	23.655	23.788	0					8	4	2	0	0	0	0.054723	1	6904	6904		77.318	21.813	1	53685			49896	1608	32936	33077	50540	50540					-0.03772919567518329
YARSVHEEF	9	Unmodified	_YARSVHEEF_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	379.8492736816406	3	379.848967	1136.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.746	1	23.746	23.246	24.246	0								0	0	0	0.3119	1	6916	6916		32.812	17.479	1				49897	1608	32936	33077	50541	50541					-0.03772919567518329
YARSVHEEF	9	Unmodified	_YARSVHEEF_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.269287109375	2	569.269813	1136.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.761	1	23.761	23.261	24.261	0								0	0	0	0.20989	1	7184	7184		34.173	6.2903	1				49898	1608	32936	33077	50542	50542					-0.03772919567518329
YARSVHEEF	9	Unmodified	_YARSVHEEF_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.8486633300781	3	379.848967	1136.52507	0.22747	8.6404E-05	-0.78577	-0.00029847	-0.5583	-0.00021207	379.8486506687111	23.955	0.21536	23.955	23.864	24.079	0					8	4	2	0	0	0	0.22377	1	8318	8318		58.782	32.089	1	282160			49899	1608	32936	33077	50543	50543					-0.03772919567518329
YARSVHEEF	9	Unmodified	_YARSVHEEF_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	379.8488464355469	3	379.848967	1136.52507	-0.47711	-0.00018123	0.36892	0.00014013	-0.10819	-4.1094E-05	379.84909605163506	23.938	0.56752	23.938	23.829	24.397	0					20	11	2	0	0	0	0.16002	1	8176	8176		66.429	34.899	1	1193600			49900	1608	32936	33077	50544	50544					-0.03772919567518329
YARSVHEEF	9	Unmodified	_YARSVHEEF_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.27001953125	2	569.269813	1136.52507	0.36125	0.00020565	0.049468	2.816E-05	0.41072	0.00023381	569.2697848504858	23.938	0.31802	23.938	23.829	24.147	0					13	6	3	0	0	0	0.017741	1	8177	8177		98.582	48.557	1	686980			49901	1608	32936	33077	50545	50545					-0.03772919567518329
YARSVHEEF	9	Unmodified	_YARSVHEEF_					0	0	0		nc|ENSG00000078808|Q9BRK5-2|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4;ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	nc|ENSG00000078808|Q9BRK5-2|SDF4	nc|ENSG00000078808|Q9BRK5-2|SDF4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.270263671875	2	569.269813	1136.52507	1.6335	0.00092989	-1.0846	-0.0006174	0.54892	0.00031248	569.2692484934628	23.923	0.31754	23.923	23.813	24.13	0					18	6	4	0	0	0	0.032181	1	8190	8190		80.455	0.51539	1	1044600			49902	1608	32936	33077	50546	50546					-0.03772919567518329
YARTAGSLPG	10	Unmodified	_YARTAGSLPG_					0	0	0			REV__ENST00000382247.5_1_4:17806795-17812118:-|nuORF	REV__ENST00000382247.5_1_4:17806795-17812118:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	496.7611999511719	2	496.761623	991.508694	-0.059236	-2.9426E-05	-0.50767	-0.00025219	-0.56691	-0.00028162	496.76116359301284	26.059	0.087738	26.059	25.998	26.086	0					5	3	2	0	0	0	0.56931	1	7877	7877		37.812	5.8567	1	74494	+		49903	18795	32937	33078	50547	50547					0.012599992663808735
YASIYIVKQ	9	Unmodified	_YASIYIVKQ_					0	0	0			REV__nc|ENSG00000177707|Q9NQS3-2|NECTIN3	REV__nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	542.80712890625	2	542.8055	1083.59645	0.3205	0.00017397	1.9809	0.0010752	2.3014	0.0012492	542.8064452012649	14.285	0.1666	14.285	14.172	14.338	0					8	4	3	0	0	0	0.33044	1	3444	3444		47.657	0	1	398870	+		49904	21135	32938	33079	50548	50548					0.05799200137153093
YASLHGQIY	9	Unmodified	_YASLHGQIY_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.7654418945312	2	526.263999	1050.51345	1.2023	0.00063272	-0.16365	-8.6122E-05	1.0386	0.0005466	526.2639763487317	22.66	0.48637	22.66	22.517	23.003	0					18	11	3	0	0	0	0.39215	1	6776	6776		42.396	3.1433	1	274550			49905	9294	32939	33080	50549	50549					-0.009791165908382027
YASTAKCL	8	Carbamidomethyl (C)	_YASTAKC(Carbamidomethyl (C))L_	YASTAKC(1)L		YASTAKC(82)L		0	1	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	457.2257385253906	2	457.226028	912.437503	-0.39584	-0.00018099	-0.33146	-0.00015155	-0.7273	-0.00033254	457.22599294617714	21.822	0.10417	21.822	21.737	21.841	0					7	3	3	0	0	0	0.3049	1	6066	6066		82.241	28.889	1	148780			49906	4482	32940	33081	50550	50550	189				-0.022218367626578583
YASTAKCL	8	Carbamidomethyl (C)	_YASTAKC(Carbamidomethyl (C))L_	YASTAKC(1)L		YASTAKC(88)L		0	1	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	457.225830078125	2	457.226028	912.437503	-1.0289	-0.00047046	0.11522	5.268E-05	-0.91372	-0.00041778	457.2262444896689	21.816	0.18115	21.816	21.746	21.927	0					11	5	3	0	0	0	0.28427	1	6334	6334		87.754	13.238	1	189250			49907	4482	32940	33081	50551	50551	189				-0.022218367626578583
YASTAKCL	8	Carbamidomethyl (C)	_YASTAKC(Carbamidomethyl (C))L_	YASTAKC(1)L		YASTAKC(120)L		0	1	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.22601318359375	2	457.226028	912.437503	-2.6403	-0.0012072	2.3312	0.0010659	-0.30913	-0.00014134	457.22712936653926	21.896	0.19612	21.896	21.792	21.988	0					7	4	2	0	0	0	0.23898	1	6436	6436		116.9	40.057	1	233200			49908	4482	32940	33081	50552	50552	189				-0.022218367626578583
YASVYLVSGV	10	Unmodified	_YASVYLVSGV_					0	0	0			REV__tr|U7T5G9|U7T5G9_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00057PE=3SV=1	REV__tr|U7T5G9|U7T5G9_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00057PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.2832641601562	2	529.281857	1056.54916	0.47521	0.00025152	2.9281	0.0015498	3.4033	0.0018013	529.2824251993823	39.82	0.2526	39.82	39.748	40.001	0					26	15	3	0	0	0	0.52707	1	12916	12916		42.396	3.1433	1	70972	+		49909	22179	32941	33082	50553	50553					0.023149208661379816
YATPIIMDM	9	Unmodified	_YATPIIMDM_					0	0	0		nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2	nc|ENSG00000057019|Q96PD2-2|DCBLD2	nc|ENSG00000057019|Q96PD2-2|DCBLD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.7518920898438	2	527.751021	1053.48749	1.2462	0.00065767	1.0044	0.00053006	2.2506	0.0011877	527.7514926285203	32.45	0.25931	32.45	32.354	32.613	0					19	8	3	0	0	0	0.35045	1	11282	11282		45.952	3.4775	1	375130			49910	11429	32942	33083	50554	50554					-0.03711470149005436
YATQVVGIN	9	Unmodified	_YATQVVGIN_					0	0	0			REV__ENSG00000013375|ENST00000513973|PGM3	REV__ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.25701904296875	2	482.758549	963.502546	0.044155	2.1316E-05	-1.307	-0.00063098	-1.2629	-0.00060966	482.75798711762155	27.771	0.25771	27.771	27.683	27.94	0					17	8	3	0	0	0	0.35045	1	8668	8668		45.952	3.4775	1	125400	+		49911	12916	32943	33084	50555	50555					0.019334810348595965
YATSSILGFK	10	Unmodified	_YATSSILGFK_					0	0	0			REV__ENSG00000165030|ENST00000297689|NFIL3	REV__ENSG00000165030|ENST00000297689|NFIL3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.7947998046875	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.843	1	34.843	34.343	35.343	0								0	0	0	0.27541	1	11766	11766		54.776	0	1		+		49912	16017	32944	33085	50556	50556					0.03634609757477847
YATVHQSYT	9	Unmodified	_YATVHQSYT_					0	0	0		ATXN2L|p.P862T|1|0.5|ENSG00000168488|chr16:28835298-28835298|C/A|missense_variant	ATXN2L|p.P862T|1|0.5|ENSG00000168488|chr16:28835298-28835298|C/A|missense_variant	ATXN2L|p.P862T|1|0.5|ENSG00000168488|chr16:28835298-28835298|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	357.17071533203125	3	357.169818	1068.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.369	1	45.369	44.869	45.869	0								0	0	0	0.35899	1	15457	15457		23.523	10.069	1				49913	262	32945	33086	50557	50557					-0.043880108331450174
YAVEGRDL	8	Unmodified	_YAVEGRDL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	461.7349548339844	2	461.735074	921.455596	0.10553	4.8725E-05	-0.14007	-6.4675E-05	-0.034543	-1.595E-05	461.73498840327215	30.065	0.2716	30.065	29.999	30.27	0					19	9	3	0	0	0	0.39125	1	9534	9534		71.877	14.066	1	455620			49914	5560	32946	33087	50558	50558					-0.00827378516294175
YAVEGRDL	8	Unmodified	_YAVEGRDL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	461.73480224609375	2	461.735074	921.455596	0.74528	0.00034412	-0.84485	-0.0003901	-0.099568	-4.5974E-05	461.73462503283105	30.328	0.63791	30.328	30.167	30.805	0					37	15	4	0	0	0	0.24806	1	10913	10913		104.75	43.775	1	4627700			49915	5560	32946	33087	50559	50559					-0.00827378516294175
YAVEGRDL	8	Unmodified	_YAVEGRDL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	461.73492431640625	2	461.735074	921.455596	-0.82195	-0.00037952	0.66006	0.00030477	-0.16189	-7.4749E-05	461.7352961656269	30.098	0.43782	30.098	30.014	30.452	0					31	15	4	0	0	0	0.37144	1	9860	9860		74.255	16.444	1	859290			49916	5560	32946	33087	50560	50560					-0.00827378516294175
YAVEGRDL	8	Unmodified	_YAVEGRDL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.73480224609375	2	461.735074	921.455596	-0.19211	-8.8703E-05	-0.28819	-0.00013307	-0.48029	-0.00022177	461.7348612533549	30.11	0.33456	30.11	30.018	30.352	0					14	8	2	0	0	0	0.43813	1	10222	10222		66.429	13.078	1	825110			49917	5560	32946	33087	50561	50561					-0.00827378516294175
YAVEGRDL	8	Unmodified	_YAVEGRDL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	461.7348937988281	2	461.735074	921.455596	-0.46417	-0.00021432	0.011758	5.429E-06	-0.45241	-0.0002089	461.73505512088633	30.253	0.35876	30.253	30.099	30.458	0					16	7	3	0	0	0	0.2678	1	11187	11187		93.195	34.414	1	1466000			49918	5560	32946	33087	50562	50562					-0.00827378516294175
YAVHEGLGL	9	Unmodified	_YAVHEGLGL_					0	0	0		nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;POLR1B|p.I264Sfs*26|1|0.05|ENSG00000125630|chr2:112551802-112551803|-/GTAAACTC|frameshift_variant;POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant;POLR1B|p.F613Lfs*14|1|0.08|ENSG00000125630|chr2:112568055-112568055|T/-|frameshift_variant	nc|ENSG00000125630|Q9H9Y6-5|POLR1B	nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7529296875	2	479.753267	957.491981	0.66857	0.00032075	-1.2348	-0.00059238	-0.56618	-0.00027163	479.7527754399675	36.367	0.22922	36.367	36.242	36.472	0					15	6	3	0	0	0	0.032656	1	14157	14157		106.42	40.612	1	458190			49919	3422	32947	33088	50563	50563					0.01153498380426754
YAVHEGLGL	9	Unmodified	_YAVHEGLGL_					0	0	0		nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;POLR1B|p.I264Sfs*26|1|0.05|ENSG00000125630|chr2:112551802-112551803|-/GTAAACTC|frameshift_variant;POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant;POLR1B|p.F613Lfs*14|1|0.08|ENSG00000125630|chr2:112568055-112568055|T/-|frameshift_variant	nc|ENSG00000125630|Q9H9Y6-5|POLR1B	nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	479.753173828125	2	479.753267	957.491981	0.92276	0.0004427	-1.1867	-0.00056932	-0.26393	-0.00012662	479.75280388487937	36.32	0.21116	36.32	36.217	36.428	0					11	4	3	0	0	0	0.077948	1	14094	14094		85.359	16.875	1	644200			49920	3422	32947	33088	50564	50564					0.01153498380426754
YAVHLQFNL	9	Unmodified	_YAVHLQFNL_					0	0	0		AGMO|p.V257Sfs*10|1|0.3|ENSG00000187546|chr7:15390724-15390725|-/T|frameshift_variant;AGMO|p.G305Vfs*31|1|0.2|ENSG00000187546|chr7:15387449-15387449|C/-|frameshift_variant;ENSG00000187546|ENST00000342526|AGMO	AGMO|p.V257Sfs*10|1|0.3|ENSG00000187546|chr7:15390724-15390725|-/T|frameshift_variant	AGMO|p.V257Sfs*10|1|0.3|ENSG00000187546|chr7:15390724-15390725|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.795654296875	2	552.795466	1103.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.388	1	42.388	41.888	42.888	0								0	0	0	0.17378	1	16061	16061		47.916	13.743	1				49921	92	32948	33089	50565	50565					0.028734491971817988
YAVHLQFTL	9	Unmodified	_YAVHLQFTL_					0	0	0		AGMO|p.N193T|1|0.39|ENSG00000187546|chr7:15418589-15418589|T/G|missense_variant	AGMO|p.N193T|1|0.39|ENSG00000187546|chr7:15418589-15418589|T/G|missense_variant	AGMO|p.N193T|1|0.39|ENSG00000187546|chr7:15418589-15418589|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	364.2013244628906	3	364.53432	1090.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.915	1	15.915	15.415	16.415	0								0	0	0	0.29774	1	3663	3663		35.618	6.4482	1				49922	93	32949	33090	50566	50566					0.03946333339968078
YAVLLILE	8	Unmodified	_YAVLLILE_					0	0	0			REV__ENST00000481451.1_1_10:124172484-124175387:+|nuORF	REV__ENST00000481451.1_1_10:124172484-124175387:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	467.2855224609375	2	467.286411	932.55827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.947	1	24.947	24.447	25.447	0								0	0	0	1.7419	1	7440	7440		39.021	9.18	1		+		49923	19600	32950	33091	50567	50567					0.08929314222484663
YAVVKSALYK	10	Unmodified	_YAVVKSALYK_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	571.333984375	2	571.334424	1140.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.447	1	33.447	32.947	33.947	0								0	0	0	0.41253	1	10877	10877		26.693	1.1189	1		+		49924	14100	32951	33092	50568	50568					0.08959462062557577
YAWGQTGL	8	Unmodified	_YAWGQTGL_					0	0	0		ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	448.2183532714844	2	448.21906	894.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.233	1	45.233	44.733	45.733	0								0	0	0	1.7419	1	18117	18117		40.573	7.057	1				49925	8067	32952	33093	50569	50569					-0.027867461994446785
YAYEPADTAL	10	Unmodified	_YAYEPADTAL_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.2587280273438	2	557.258579	1112.50261	3.4999	0.0019503	-3.3419	-0.0018623	0.15793	8.8009E-05	557.2565820557941	41.631	0.2383	41.631	41.506	41.745	0					10	6	2	0	0	0	0.17732	1	16578	16578		82.241	32.704	1	252940			49926	2445	32953	33094	50570	50570					-0.049145637558240196
YAYKLFLY	8	Unmodified	_YAYKLFLY_					0	0	0			REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1	REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7920532226562	2	540.791861	1079.56917	-1.4815	-0.00080116	1.0908	0.00058992	-0.39063	-0.00021125	540.7925320905807	37.518	0.12183	37.518	37.463	37.584	0					8	6	2	0	0	0	0.67475	1	13434	13434		37.028	2.8559	1	46892	+		49927	21722	32954	33095	50571	50571					0.032567165967748224
YAYRCVPP	8	Unmodified	_YAYRCVPP_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.7369384765625	2	484.736563	967.458573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.785	1	28.785	28.285	29.285	0								0	0	0	1.7419	1	9020	9020		29.842	6.7991	1				49928	7333	32955	33096	50572	50572					-0.02645826663126627
YCAKIRKFCAT	11	Unmodified	_YCAKIRKFCAT_					0	0	0			REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|25|1|sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|25|1|sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	652.334716796875	2	652.336118	1302.65768	-0.79392	-0.0005179	-0.60062	-0.00039181	-1.3945	-0.00090971	652.3354357383872	40.133	0.1839	40.133	40.037	40.221	0					10	6	2	0	0	0	0.77686	1	15803	15803		19.997	1.7347	1	79200	+		49929	20738	32956	33097	50573	50573					0.018460655732724263
YCDMMHQRQF	10	Unmodified	_YCDMMHQRQF_					0	0	0			REV__ENSG00000106536|ENST00000518318|POU6F2	REV__ENSG00000106536|ENST00000518318|POU6F2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	679.779541015625	2	679.775567	1357.53658	2.2639	0.001539	2.6921	0.00183	4.956	0.003369	679.7774634908149	39.263	0.18008	39.263	39.19	39.37	0					9	6	2	0	0	0	0.67098	1	15452	15452		25.574	2.0514	1	75924	+		49930	13826	32957	33098	50574	50574					-0.1278850513172074
YCFECQYPRV	10	Unmodified	_YCFECQYPRV_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	654.7844848632812	2	654.281008	1306.54746	1.2832	0.00083956	1.8044	0.0011806	3.0876	0.0020201	654.2821997842633	39.147	0.20025	39.147	39.077	39.278	0					19	11	3	0	0	0	0.70877	1	13159	13159		20.947	1.8434	1	122310	+		49931	16994	32958	33099	50575	50575					-0.09354779485784093
YCGDVDFRG	9	Unmodified	_YCGDVDFRG_					0	0	0			REV__ENST00000497742.6_1_3:49462268-49462495:-|nuORF	REV__ENST00000497742.6_1_3:49462268-49462495:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.2155151367188	2	516.216192	1030.41783	-0.51336	-0.000265	-0.89299	-0.00046098	-1.4063	-0.00072598	516.2155088524721	11.036	0.085007	11.036	10.979	11.064	0					5	3	2	0	0	0	0.5654	1	2164	2164		25.45	0	1	86124	+		49932	15255	32959	33100	50576	50576					-0.09616212773403277
YCHYFEVR	8	Unmodified	_YCHYFEVR_					0	0	0		tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.7509155273438	2	558.750201	1115.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.805	1	34.805	34.305	35.305	0								0	0	0	1.7419	1	12350	12350		37.159	3.6435	1				49933	22976	32960	33101	50577	50577					-0.06727343122747698
YCLTLASLL	9	Unmodified	_YCLTLASLL_					0	0	0			REV__ENST00000521901.5_1_5:179382656-179390574:-|nuORF	REV__ENST00000521901.5_1_5:179382656-179390574:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.7767639160156	2	498.775354	995.536154	3.3783	0.001685	0.22219	0.00011082	3.6005	0.0017958	498.77554998632445	28.296	0.18217	28.296	28.182	28.364	0					9	6	2	0	0	0	0.23186	1	9108	9108		57.811	2.3071	1	63774	+		49934	14030	32961	33102	50578	50578					0.03820766482408544
YCMTLASQV	9	Unmodified	_YCMTLASQV_					0	0	0			REV__ENST00000356721.3_1_16:48396017-48396254:-|nuORF	REV__ENST00000356721.3_1_16:48396017-48396254:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.23480224609375	2	508.232996	1014.45144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.486	1	13.486	12.986	13.986	0								0	0	0	0.35899	1	2652	2652		23.042	3.0457	1		+		49935	18524	32962	33103	50579	50579					-0.05520927325869707
YCPPPQRL	8	Unmodified	_YCPPPQRL_					0	0	0			REV__ENST00000468045.5_1_2:27354838-27356101:-|nuORF	REV__ENST00000468045.5_1_2:27354838-27356101:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	487.7520446777344	2	487.249837	972.485122	0.63194	0.00030791	1.2071	0.00058814	1.839	0.00089605	487.25047639535484	22.544	0.90701	22.544	22.204	23.111	0					53	18	4	0	0	0	0.75243	1	7784	7784		26.796	1.3459	1	4581800	+		49936	14954	32963	33104	50580	50580					-0.0022213777180013494
YCRGEFWW	8	Unmodified	_YCRGEFWW_					0	0	0			REV__KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant	REV__KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.7462768554688	2	573.744919	1145.47529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.063	1	24.063	23.563	24.563	0								0	0	0	1.7419	1	8374	8374		26.796	0.10319	1		+		49937	14913	32964	33105	50581	50581					-0.09163325777194586
YCSRFMSHF	9	Oxidation (M)	_YCSRFM(Oxidation (M))SHF_		YCSRFM(1)SHF		YCSRFM(42)SHF	0	0	1		MC5R|p.F297Lfs*11|1|0.07|ENSG00000176136|chr18:13826652-13826653|-/T|frameshift_variant;ENSG00000176136|ENST00000589410|MC5R	MC5R|p.F297Lfs*11|1|0.07|ENSG00000176136|chr18:13826652-13826653|-/T|frameshift_variant	MC5R|p.F297Lfs*11|1|0.07|ENSG00000176136|chr18:13826652-13826653|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	597.2489013671875	2	597.246969	1192.47938	3.1647	0.0018901	0.13261	7.9201E-05	3.2973	0.0019693	597.2469612025827	42.046	0.39978	42.046	41.935	42.335	0					26	10	4	0	0	0	0.39215	1	16736	16736		42.396	42.396	1	601290			49938	6590	32965	33106	50582	50582		272			-0.10915604345791508
YCWLCRALI	9	Unmodified	_YCWLCRALI_					0	0	0		ENSG00000168878|ENST00000519937|SFTPB	ENSG00000168878|ENST00000519937|SFTPB	ENSG00000168878|ENST00000519937|SFTPB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	570.7896118164062	2	570.788272	1139.56199	0.0076397	4.3606E-06	2.5947	0.001481	2.6023	0.0014854	570.7896224911783	33.814	0.075615	33.814	33.768	33.844	0					4	2	2	0	0	0	0.47428	1	12544	12544		35.201	4.6971	1	210650			49939	6131	32966	33107	50583	50583					-0.0022066254696255783
YDAEETRIM	9	Unmodified	_YDAEETRIM_					0	0	0			REV__ENSG00000145536|ENST00000274181|ADAMTS16	REV__ENSG00000145536|ENST00000274181|ADAMTS16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	564.253173828125	2	564.255514	1126.49647	0.38337	0.00021632	-3.4943	-0.0019717	-3.1109	-0.0017553	564.2531767491045	41.488	0.065067	41.488	41.426	41.491	0					6	3	2	0	0	0	0.37197	1	15758	15758		44.117	1.7207	1	50351	+		49940	15277	32967	33108	50584	50584					-0.06171405258987761
YDCLVVLLL	9	Unmodified	_YDCLVVLLL_					0	0	0			REV__ENSG00000136114|ENST00000258613|THSD1	REV__ENSG00000136114|ENST00000258613|THSD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.80029296875	2	525.798829	1049.5831	1.6273	0.00085562	2.373	0.0012477	4.0003	0.0021034	525.7999624197955	48.877	0.17465	48.877	48.786	48.961	0					19	9	3	0	0	0	0.35045	1	19387	19387		45.952	3.0877	1	186310	+		49941	14849	32968	33109	50585	50585					0.06029626033569002
YDCMACGK	8	Unmodified	_YDCMACGK_					0	0	0		nc|ENSG00000251369|Q7Z398-2|ZNF550;ENSG00000251369|ENST00000699333|ZNF550	nc|ENSG00000251369|Q7Z398-2|ZNF550	nc|ENSG00000251369|Q7Z398-2|ZNF550	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	445.6657409667969	2	445.663892	889.31323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.173	1	50.173	49.673	50.673	0								0	0	0	1.7419	1	19816	19816		18.324	4.5491	1				49942	7994	32969	33110	50586	50586					-0.13585373845978665
YDDDTTIIGI	10	Unmodified	_YDDDTTIIGI_					0	0	0			REV__GPRC6A|p.V453Lfs*6|1|0.08|ENSG00000173612|chr6:116800775-116800776|-/TAAG|frameshift_variant	REV__GPRC6A|p.V453Lfs*6|1|0.08|ENSG00000173612|chr6:116800775-116800776|-/TAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.2684326171875	2	563.269144	1124.52373	1.4418	0.00081214	-2.6749	-0.0015067	-1.233	-0.00069452	563.267473241554	15.207	0.10886	15.207	15.144	15.253	0					5	3	2	0	0	0	0.69166	1	3274	3274		23.042	0.46283	1	128320	+		49943	16524	32970	33111	50587	50587					-0.03354598446935597
YDDYMQVYEGL	11	Unmodified	_YDDYMQVYEGL_					0	0	0		LRP3|p.V308M|1|0.23|ENSG00000130881|chr19:33205692-33205692|G/A|missense_variant	LRP3|p.V308M|1|0.23|ENSG00000130881|chr19:33205692-33205692|G/A|missense_variant	LRP3|p.V308M|1|0.23|ENSG00000130881|chr19:33205692-33205692|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	698.29248046875	2	698.292293	1394.57003	2.2644	0.0015812	-1.788	-0.0012485	0.47638	0.00033265	698.2910975945962	19.617	0.21529	19.617	19.559	19.775	0					8	4	3	0	0	0	0.53842	1	6246	6246		41.427	4.9799	1	777760			49944	11324	32971	33112	50588	50588					-0.11146901607139625
YDGHRCCCIVT	11	2 Carbamidomethyl (C)	_YDGHRC(Carbamidomethyl (C))C(Carbamidomethyl (C))CIVT_	YDGHRC(0.999)C(0.997)C(0.004)IVT		YDGHRC(30)C(25)C(-25)IVT		0	2	0			REV__nc|ENSG00000204428|Q5SRR4-3|LY6G5C	REV__nc|ENSG00000204428|Q5SRR4-3|LY6G5C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	692.2853393554688	2	692.283757	1382.55296	2.2042	0.0015259	-0.11177	-7.7374E-05	2.0924	0.0014486	692.283931406302	31.943	0.46909	31.943	31.835	32.304	0					34	9	6	0	0	0	0.44903	1	12004	12004		47.96	8.7067	3	6333700	+		49945	21190	32972	33113	50589	50589	729;730				-0.12301423965618596
YDILHDVSCA	10	Unmodified	_YDILHDVSCA_					0	0	0		SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.H875Tfs*13|1|0.16|ENSG00000198198|chr1:43425177-43425178|-/C|frameshift_variant;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.A1115Lfs*4|1|0.26|ENSG00000198198|chr1:43427358-43427358|G/-|frameshift_variant;SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	568.2601928710938	2	568.258056	1134.50156	1.955	0.001111	1.6706	0.00094934	3.6256	0.0020603	568.2588862356419	15.739	0.2627	15.739	15.617	15.88	0					10	5	3	0	0	0	0.49411	1	4370	4370		45.972	1.8554	1	637270			49946	7539	32973	33114	50590	50590					-0.060311013963428195
YDIRTNAV	8	Unmodified	_YDIRTNAV_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.248291015625	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.154	1	30.154	29.654	30.654	0								0	0	0	1.7419	1	9876	9876		60.118	6.7668	1				49947	3040	32974	33115	50591	50591					0.004923103750456903
YDIRTNAV	8	Unmodified	_YDIRTNAV_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	476.24853515625	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.436	1	30.436	29.936	30.936	0								0	0	0	1.7419	1	11376	11376		54.776	1.4249	1				49948	3040	32974	33115	50592	50592					0.004923103750456903
YDIRTNAV	8	Unmodified	_YDIRTNAV_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.24786376953125	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.343	1	30.343	29.843	30.843	0								0	0	0	1.7419	1	11222	11222		40.058	6.5426	1				49949	3040	32974	33115	50593	50593					0.004923103750456903
YDKAAKIAK	9	Unmodified	_YDKAAKIAK_					0	0	0		ENST00000442741.1_1_13:42830025-42830667:+|nuORF;nc|ENSG00000091483|P07954-2|FH;ENSG00000091483|ENST00000366560|FH	ENST00000442741.1_1_13:42830025-42830667:+|nuORF	ENST00000442741.1_1_13:42830025-42830667:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5343017578125	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.406	1	40.406	39.906	40.906	0								0	0	0	0.3368	1	16040	16040		21.686	0	1				49950	1858	32975	33116	50594	50594					0.0781033333993264
YDKAKMLW	8	Unmodified	_YDKAKMLW_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7713012695312	2	527.773145	1053.53174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.313	1	17.313	16.813	17.813	0								0	0	0	1.7419	1	4106	4106		20.482	0.48506	1		+		49951	16663	32976	33117	50595	50595					0.007113020594943009
YDKNKTSM	8	Unmodified	_YDKNKTSM_					0	0	0		tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.7337646484375	2	493.734217	985.453881	-1.5911	-0.00078557	0.90664	0.00044764	-0.68443	-0.00033793	493.7345996987045	31.655	0.22198	31.655	31.54	31.762	0					19	8	3	0	0	0	0.39542	1	10498	10498		71.378	0	1	207120			49952	22817	32977	33118	50596	50596					-0.03942755596540337
YDLAFPVQ	8	Unmodified	_YDLAFPVQ_					0	0	0		ENST00000255977.6_2_7:140153158-140153341:-|nuORF	ENST00000255977.6_2_7:140153158-140153341:-|nuORF	ENST00000255977.6_2_7:140153158-140153341:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	476.7437744140625	2	476.742368	951.470183	2.2579	0.0010764	0.051747	2.467E-05	2.3097	0.0011011	476.7423847063158	38.429	0.52146	38.429	38.055	38.577	0					18	11	2	0	0	0	0.60719	1	15120	15120		47.916	1.9434	1	187850			49953	8260	32978	33119	50597	50597					-0.007493063681295098
YDLCSVVV	8	Unmodified	_YDLCSVVV_					0	0	0		nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	449.2247314453125	2	449.222954	896.431355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.445	1	15.445	14.945	15.945	0								0	0	0	1.7419	1	3522	3522		21.702	0	1				49954	3071	32979	33120	50598	50598					-0.021003549941497113
YDLYERFQ	8	Unmodified	_YDLYERFQ_					0	0	0			REV__ENST00000535343.5_1_12:132632219-132636084:+|nuORF	REV__ENST00000535343.5_1_12:132632219-132636084:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	567.2673950195312	2	567.266739	1132.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.472	1	33.472	32.972	33.972	0								0	0	0	1.7419	1	10887	10887		30.504	1.3541	1		+		49955	17000	32980	33121	50599	50599					-0.042034377990376015
YDMTVPKL	8	Unmodified	_YDMTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.75146484375	2	483.751879	965.489204	2.432	0.0011765	-2.5673	-0.0012419	-0.13531	-6.5455E-05	483.75055869192676	42.092	0.54898	42.092	41.584	42.133	0					19	15	2	0	0	0	0.51384	1	16755	16755		58.782	8.7574	1	89995			49956	3401	32981	33122	50600	50600					0.0050790693126145925
YDNRCRNM	8	Oxidation (M)	_YDNRCRNM(Oxidation (M))_		YDNRCRNM(1)		YDNRCRNM(77)	0	0	1		ENST00000564987.1_1_16:23541198-23555881:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2	ENST00000564987.1_1_16:23541198-23555881:-|nuORF	ENST00000564987.1_1_16:23541198-23555881:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2265625	2	544.224025	1086.4335	3.6752	0.0020001	0.092787	5.0497E-05	3.768	0.0020506	544.2241192212612	27.985	0.56514	27.985	27.878	28.443	0					27	11	3	0	0	0	0.34985	1	10074	10074		76.847	9.353	1	3962500			49957	2233	32982	33123	50601	50601		100			-0.10626249528013432
YDPNMMYQ	8	Unmodified	_YDPNMMYQ_					0	0	0			REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2067260742188	2	531.206978	1060.3994	0.28767	0.00015281	-0.88066	-0.00046781	-0.59299	-0.000315	531.2065127352346	12.422	0.47265	12.422	12.37	12.843	0					17	11	2	0	0	0	0.78978	1	2799	2799		21.96	6.3181	1	487260	+		49958	21720	32983	33124	50602	50602					-0.12838090739614927
YDQAVLKM	8	Unmodified	_YDQAVLKM_					0	0	0			REV__ENST00000597025.1_1_19:15567220-15568129:-|nuORF	REV__ENST00000597025.1_1_19:15567220-15568129:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.2492980957031	2	484.249503	966.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.419	1	37.419	36.919	37.919	0								0	0	0	1.7419	1	14184	14184		60.972	16.441	1		+		49959	13753	32984	33125	50603	50603					-0.0001297721150876896
YDQGCCFM	8	Unmodified	_YDQGCCFM_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	484.1637878417969	2	483.661349	965.308145	-0.19674	-9.5154E-05	-2.5572	-0.0012368	-2.754	-0.001332	483.66264160526947	49.721	0.94299	49.721	49.418	50.361	0					154	41	6	0	0	0	0.7887	1	18103	18103		12.959	0.75233	1	404900	+		49960	13001	32985	33126	50604	50604					-0.1758967770858817
YDQLRLTL	8	Unmodified	_YDQLRLTL_					0	0	0			REV__PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	REV__PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.286865234375	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.789	1	33.789	33.289	34.289	0								0	0	0	1.7419	1	11361	11361		32.812	0	1		+		49961	17312	32986	33127	50605	50605					0.05093742960275449
YDQRYSPG	8	Unmodified	_YDQRYSPG_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.22393798828125	2	493.222331	984.430109	2.7634	0.001363	0.19793	9.7622E-05	2.9613	0.0014606	493.22271691856355	24.455	0.45791	24.455	24.347	24.805	0					18	9	4	0	0	0	0.39125	1	8453	8453		71.877	71.877	1	1478200	+		49962	16026	32987	33128	50606	50606					-0.06272853038706216
YDRYPALSF	9	Unmodified	_YDRYPALSF_					0	0	0			REV__nc|nan|Q6ZRI6-2|C15orf39	REV__nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	566.7797241210938	2	566.277106	1130.53966	1.9225	0.0010887	0.37695	0.00021346	2.2994	0.0013021	566.7785594878534	43.94	0.12272	43.94	43.871	43.994	0					8	5	2	0	0	0	0.21263	1	17154	17154		53.351	8.8204	1	59390	+		49963	16172	32988	33129	50607	50607					-0.020388474193850925
YDTVTTVSL	9	Unmodified	_YDTVTTVSL_					0	0	0			REV__CCR8|p.F250Sfs*25|1|0.37|ENSG00000179934|chr3:39333077-39333077|T/-|frameshift_variant	REV__CCR8|p.F250Sfs*25|1|0.37|ENSG00000179934|chr3:39333077-39333077|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.756103515625	2	499.755672	997.496792	-1.0349	-0.00051722	-0.50692	-0.00025333	-1.5419	-0.00077055	499.75534658239894	30.311	0.49851	30.311	30.096	30.595	0					39	17	3	0	0	0	0.20551	1	9890	9890		60.972	0	1	257290	+		49964	12376	32989	33130	50608	50608					-0.0020566226748996996
YDVGKTIQEF	10	Unmodified	_YDVGKTIQEF_					0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	600.2993774414062	2	600.300778	1198.587	0.14085	8.4554E-05	-2.0939	-0.001257	-1.9531	-0.0011724	600.2993887755819	29.13	0.20811	29.13	29.061	29.269	0					10	7	2	0	0	0	0.59277	1	9167	9167		10.866	0	1	59080	+		49965	13054	32990	33131	50609	50609					-0.004346129390569331
YDVRKLKE	8	Unmodified	_YDVRKLKE_					0	0	0			REV__ENST00000513853.5_1_11:28724169-28724340:+|nuORF	REV__ENST00000513853.5_1_11:28724169-28724340:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.8010864257812	2	525.800749	1049.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.044	1	38.044	37.544	38.544	0								0	0	0	1.7419	1	14447	14447		40.778	5.1599	1		+		49966	19897	32991	33132	50610	50610					0.06413431851638052
YDVVTPKI	8	Unmodified	_YDVVTPKI_					0	0	0		ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	467.76568603515625	2	467.765843	933.517133	2.6426	0.0012361	-1.6483	-0.00077104	0.9942	0.00046505	467.7654494433376	41.321	0.49065	41.321	40.909	41.4	0					19	11	2	0	0	0	0.53424	1	16431	16431		56.721	1.2168	1	65233			49967	6831	32992	33133	50611	50611					0.04771553183002197
YDWCCPLG	8	Unmodified	_YDWCCPLG_					0	0	0			REV__ENSG00000170634|ENST00000607452|ACYP2	REV__ENSG00000170634|ENST00000607452|ACYP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	478.685302734375	2	478.685681	955.35681	-0.3205	-0.00015342	-0.74769	-0.00035791	-1.0682	-0.00051133	478.68533391106854	20.577	0.91694	20.577	19.743	20.66	0					34	21	2	0	0	0	0.8006	1	5816	5816		20.482	1.1219	1	78677	+		49968	16371	32993	33134	50612	50612					-0.12265441077204287
YEAAATRL	8	Unmodified	_YEAAATRL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	447.7376403808594	2	447.737617	893.460681	0.072919	3.2649E-05	-0.8228	-0.0003684	-0.74988	-0.00033575	447.7374793989628	26.105	0.10082	26.105	26.053	26.154	0					4	2	2	0	0	0	0.44767	1	8973	8973		65.465	22.991	1	59292			49969	5960	32994	33135	50613	50613					0.009689253463307068
YEAAATRL	8	Unmodified	_YEAAATRL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	447.7372741699219	2	447.737617	893.460681	-0.11442	-5.1231E-05	-0.64842	-0.00029032	-0.76284	-0.00034155	447.73725162110765	26.092	0.21859	26.092	25.983	26.202	0					6	4	2	0	0	0	0.4668	1	9311	9311		63.534	26.375	1	200120			49970	5960	32994	33135	50614	50614					0.009689253463307068
YEAAATRL	8	Unmodified	_YEAAATRL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	447.7374267578125	2	447.737617	893.460681	-0.41929	-0.00018773	-0.82773	-0.00037061	-1.247	-0.00055834	447.7376306615886	26.06	0.44952	26.06	25.718	26.168	0					11	7	2	0	0	0	0.51931	1	9173	9173		58.23	17.452	1	341990			49971	5960	32994	33135	50615	50615					0.009689253463307068
YEAELRTTL	9	Unmodified	_YEAELRTTL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	548.28857421875	2	548.287671	1094.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.165	1	35.165	34.665	35.665	0								0	0	0	0.1568	1	11523	11523		58.246	13.869	1				49972	7898	32995	33136	50616	50616					0.01729117889499321
YEAELRTTL	9	Unmodified	_YEAELRTTL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	548.2880249023438	2	548.287671	1094.56079	0.48392	0.00026533	0.41541	0.00022776	0.89933	0.00049309	548.2880283597461	35.411	0.26833	35.411	35.334	35.602	0					13	7	2	0	0	0	0.17062	1	13303	13303		65.157	17.5	1	369960			49973	7898	32995	33136	50617	50617					0.01729117889499321
YEAELRTTL	9	Unmodified	_YEAELRTTL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	548.28857421875	2	548.287671	1094.56079	0.40468	0.00022188	0.90005	0.00049349	1.3047	0.00071536	548.2881100370041	35.214	0.18871	35.214	35.149	35.337	0					13	8	2	0	0	0	0.099758	1	11909	11909		79.489	30.048	1	150540			49974	7898	32995	33136	50618	50618					0.01729117889499321
YEAELRTTL	9	Unmodified	_YEAELRTTL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.2881469726562	2	548.287671	1094.56079	1.789	0.00098087	-0.99915	-0.00054782	0.78983	0.00043305	548.2870624251868	35.428	0.39728	35.428	35.318	35.716	0					19	11	2	0	0	0	0.029571	1	13734	13734		109.44	49.321	1	906930			49975	7898	32995	33136	50619	50619					0.01729117889499321
YEAELRTTL	9	Unmodified	_YEAELRTTL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	548.2882690429688	2	548.287671	1094.56079	-1.5072	-0.00082641	2.4403	0.001338	0.9331	0.0005116	548.2888487903832	35.214	0.23697	35.214	35.141	35.378	0					11	8	2	0	0	0	0.24169	1	12533	12533		56.632	7.1907	1	112630			49976	7898	32995	33136	50620	50620					0.01729117889499321
YEAELRTTL	9	Unmodified	_YEAELRTTL_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.2880249023438	2	548.287671	1094.56079	1.8669	0.0010236	-0.69127	-0.00037902	1.1756	0.00064458	548.2871406263621	35.373	0.47478	35.373	35.262	35.737	0					12	9	2	0	0	0	0.099758	1	13661	13661		79.489	6.6098	1	556080			49977	7898	32995	33136	50621	50621					0.01729117889499321
YEAKCVKV	8	Unmodified	_YEAKCVKV_					0	0	0		ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000558539.5_1_15:79170271-79178570:+|nuORF;ENST00000557961.5_1_15:79165359-79178570:+|nuORF;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF	ENSG00000185787|ENST00000426013|MORF4L1	ENSG00000185787|ENST00000426013|MORF4L1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	470.2521057128906	2	470.252046	938.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.253	1	22.253	21.753	22.753	0								0	0	0	1.7419	1	7200	7200		37.159	8.9048	1				49978	7105	32996	33137	50622	50622					0.017833266511161128
YEALLNIKV	9	Unmodified	_YEALLNIKV_					0	0	0		CON__P05784;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.8126831054688	2	531.813325	1061.6121	1.7168	0.00091304	-0.23425	-0.00012458	1.4826	0.00078847	531.8129290785885	47.249	0.13943	47.249	47.18	47.32	0					14	8	2	0	0	0	0.41113	1	18061	18061		40.778	8.8233	1	77032		+	49979	2650;631	32997	33138	50623	50623					0.08375486654176711
YEALLNIKV	9	Unmodified	_YEALLNIKV_					0	0	0		CON__P05784;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	CON__P05784;ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.8140869140625	2	531.813325	1061.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.211	1	47.211	46.711	47.711	0								0	0	0	0.13425	1	18867	18867		63.534	27.087	1			+	49980	2650;631	32997	33138	50624	50624					0.08375486654176711
YEANYWQF	8	Unmodified	_YEANYWQF_					0	0	0		ENSG00000171864|ENST00000305817|PRND	ENSG00000171864|ENST00000305817|PRND	ENSG00000171864|ENST00000305817|PRND	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7407836914062	2	560.740357	1119.46616	3.4685	0.0019449	-2.8038	-0.0015722	0.66469	0.00037272	560.7388291296406	42.732	0.2175	42.732	42.651	42.868	0					8	6	2	0	0	0	0.59773	1	17080	17080		49.442	15.926	1	150600			49981	6330	32998	33139	50625	50625					-0.08879395861845296
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.7655029296875	2	489.766374	977.518196	-0.1143	-5.5978E-05	0.28729	0.00014071	0.173	8.4728E-05	489.76638200635125	33.925	0.15527	33.925	33.83	33.985	0					17	6	3	0	0	0	0.44767	1	11056	11056		65.465	17.808	1	186840			49982	7603	32999	33140	50626	50626					0.028537675519032746
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.76629638671875	2	489.766374	977.518196	0.79846	0.00039106	-0.57409	-0.00028117	0.22436	0.00010989	489.76607805033655	34.184	0.43776	34.184	34.067	34.505	0					23	11	4	0	0	0	0.44767	1	12702	12702		65.465	12.529	1	1406100			49983	7603	32999	33140	50627	50627					0.028537675519032746
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.7659606933594	2	489.766374	977.518196	-0.072481	-3.5499E-05	-0.25475	-0.00012477	-0.32723	-0.00016027	489.766202052026	34.193	0.18497	34.193	34.105	34.29	0					10	4	3	0	0	0	0.26795	1	13148	13148		93.143	13.431	1	201160			49984	7603	32999	33140	50628	50628					0.028537675519032746
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	489.76611328125	2	489.766374	977.518196	0.60288	0.00029527	-0.7784	-0.00038123	-0.17551	-8.5959E-05	489.7656036087331	34.177	0.25327	34.177	34.092	34.345	0					14	6	3	0	0	0	0.36488	1	13146	13146		75.043	10.836	1	733440			49985	7603	32999	33140	50629	50629					0.028537675519032746
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.7658996582031	2	489.766374	977.518196	0.57516	0.00028169	-0.4447	-0.0002178	0.13046	6.3894E-05	489.76626005627054	33.93	0.2213	33.93	33.862	34.083	0					9	6	2	0	0	0	0.41	1	11975	11975		69.628	3.1983	1	69424			49986	7603	32999	33140	50630	50630					0.028537675519032746
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	489.76531982421875	2	489.766374	977.518196	-0.13734	-6.7263E-05	-0.3806	-0.0001864	-0.51794	-0.00025367	489.7659835994224	33.95	0.22342	33.95	33.848	34.071	0					11	6	2	0	0	0	0.63854	1	11959	11959		42.864	5.0528	1	239410			49987	7603	32999	33140	50631	50631					0.028537675519032746
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.76580810546875	2	489.766374	977.518196	-0.52925	-0.00025921	0.60791	0.00029773	0.078658	3.8524E-05	489.76672246086054	34.109	0.455	34.109	34.005	34.46	0					22	9	4	0	0	0	0.44767	1	13028	13028		65.465	17.808	1	1353900			49988	7603	32999	33140	50632	50632					0.028537675519032746
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.76617431640625	2	489.766374	977.518196	0.77151	0.00037786	-0.90189	-0.00044171	-0.13038	-6.3854E-05	489.7659074460955	34.142	0.55063	34.142	33.892	34.443	0					22	11	4	0	0	0	0.30066	1	13042	13042		82.75	0.50997	1	1966400			49989	7603	32999	33140	50633	50633					0.028537675519032746
YEAYVEWK	8	Unmodified	_YEAYVEWK_					0	0	0		nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10;ENST00000517942.1_1_8:33229659-33246696:-|nuORF;nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2598876953125	2	544.258382	1086.50221	3.6814	0.0020036	-0.073684	-4.0103E-05	3.6077	0.0019635	544.2584381204333	42.595	1.0054	42.595	42.463	43.468	0					67	31	4	0	0	0	0.73426	1	17353	17353		29.15	0	1	764370			49990	6377	33000	33141	50634	50634					-0.037579386849984076
YECIQCGKAH	10	Unmodified	_YECIQCGKAH_					0	0	0		ENSG00000136866|ENST00000374227|ZFP37;nc|ENSG00000136866|Q9Y6Q3-3|ZFP37;nc|ENSG00000136866|Q9Y6Q3-2|ZFP37	ENSG00000136866|ENST00000374227|ZFP37	ENSG00000136866|ENST00000374227|ZFP37	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	576.251220703125	2	576.252251	1150.48995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.598	1	18.598	18.098	19.098	0								0	0	0	0.4201	1	4887	4887		14.137	1.1779	1				49991	4120	33001	33142	50635	50635					-0.07927621691351305
YECQLIYK	8	Unmodified	_YECQLIYK_					0	0	0		DSP|p.D1987Y|1|0.32|ENSG00000096696|chr6:7583221-7583221|G/T|missense_variant	DSP|p.D1987Y|1|0.32|ENSG00000096696|chr6:7583221-7583221|G/T|missense_variant	DSP|p.D1987Y|1|0.32|ENSG00000096696|chr6:7583221-7583221|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2606811523438	2	530.26261	1058.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.563	1	39.563	39.063	40.063	0								0	0	0	1.7419	1	15645	15645		45.952	5.3793	1				49992	851	33002	33143	50636	50636					-0.016247080400262348
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2688598632812	2	520.268947	1038.52334	0.64753	0.00033689	-0.31983	-0.0001664	0.3277	0.00017049	520.2691020615198	31.918	0.11539	31.918	31.839	31.954	0					7	4	2	0	0	0	0.28897	1	10278	10278		51.193	11.94	1	87118			49993	3782	33003	33144	50637	50637					0.005620266238565819
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.269287109375	2	520.268947	1038.52334	0.067998	3.5377E-05	0.31904	0.00016599	0.38704	0.00020137	520.2692124493	32.176	0.1367	32.176	32.087	32.223	0					8	3	3	0	0	0	0.047855	1	11777	11777		96.034	32.5	1	405630			49994	3782	33003	33144	50638	50638					0.005620266238565819
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	520.2689208984375	2	520.268947	1038.52334	0.25358	0.00013193	0.68793	0.00035791	0.94151	0.00048984	520.2688892550965	31.961	0.14105	31.961	31.882	32.023	0					9	5	2	0	0	0	0.14578	1	10628	10628		68.846	12.412	1	126650			49995	3782	33003	33144	50639	50639					0.005620266238565819
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2688598632812	2	520.268947	1038.52334	1.6803	0.00087423	-1.3927	-0.00072459	0.28762	0.00014964	520.2681975691137	32.138	0.29848	32.138	31.99	32.289	0					15	6	3	0	0	0	0.019258	1	12194	12194		123.21	48.165	1	676020			49996	3782	33003	33144	50640	50640					0.005620266238565819
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2684326171875	2	520.268947	1038.52334	-1.3523	-0.00070354	1.6448	0.00085575	0.29255	0.00015221	520.2697021883386	31.927	0.13587	31.927	31.854	31.99	0					7	4	2	0	0	0	0.24334	1	11051	11051		56.434	19.987	1	69697			49997	3782	33003	33144	50641	50641					0.005620266238565819
YEDEDEDDDD	10	Unmodified	_YEDEDEDDDD_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	630.1907958984375	2	630.188942	1258.36333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.93	1	49.93	49.43	50.43	0								0	0	0	0.4201	1	19732	19732		6.3127	0	1		+		49998	13436	33004	33145	50642	50642					-0.25551642692448695
YEDFNIQL	8	Unmodified	_YEDFNIQL_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant;MUC5AC|p.L324Cfs*137|1|0.3|ENSG00000215182|chr11:1164280-1164280|G/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.248046875	2	521.248015	1040.48148	3.3827	0.0017632	-3.3701	-0.0017566	0.012677	6.6078E-06	521.2463153831548	42.818	0.15189	42.818	42.687	42.839	0					6	4	2	0	0	0	0.58597	1	17115	17115		51.335	2.1247	1	66889			49999	7825	33005	33146	50643	50643					-0.037145290646549256
YEDLKAEL	8	Unmodified	_YEDLKAEL_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	490.75048828125	2	490.75039	979.486227	-0.13314	-6.5338E-05	-0.23379	-0.00011473	-0.36693	-0.00018007	490.75021511610186	35.45	0.1362	35.45	35.387	35.523	0					11	7	2	0	0	0	0.48092	1	11613	11613		62.107	7.3311	1	59056			50000	3517	33006	33147	50644	50644					-0.004336449219067617
YEDLKAEL	8	Unmodified	_YEDLKAEL_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.75091552734375	2	490.75039	979.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.749	1	35.749	35.249	36.249	0								0	0	0	1.7419	1	13430	13430		42.864	5.7052	1				50001	3517	33006	33147	50645	50645					-0.004336449219067617
YEDLKAEL	8	Unmodified	_YEDLKAEL_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.75067138671875	2	490.75039	979.486227	-0.066531	-3.265E-05	-0.16393	-8.0449E-05	-0.23046	-0.0001131	490.75030282788975	35.721	0.29836	35.721	35.544	35.842	0					17	8	3	0	0	0	0.31979	1	13856	13856		80.455	12.961	1	532950			50002	3517	33006	33147	50646	50646					-0.004336449219067617
YEDLKAEL	8	Unmodified	_YEDLKAEL_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.75	2	490.75039	979.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.668	1	35.668	35.168	36.168	0								0	0	0	1.7419	1	13788	13788		82.75	13.123	1				50003	3517	33006	33147	50647	50647					-0.004336449219067617
YEDLTAKDIEE	11	Unmodified	_YEDLTAKDIEE_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	663.3076782226562	2	663.308997	1324.60344	-2.0097	-0.0013331	0.074373	4.9332E-05	-1.9354	-0.0012837	663.3090066576267	21.436	0.31359	21.436	21.311	21.624	0					20	7	4	0	0	0	0.40479	1	6823	6823		51.193	10.415	1	2327700			50004	6703	33007	33148	50648	50648					-0.04587576563608309
YEDLTAKDIEE	11	Unmodified	_YEDLTAKDIEE_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	663.3077392578125	2	663.308997	1324.60344	-2.5216	-0.0016726	0.53588	0.00035545	-1.9858	-0.0013172	663.3094041599622	21.33	0.36523	21.33	21.222	21.587	0					20	7	5	0	0	0	0.42746	1	6939	6939		49.536	49.536	1	1454500			50005	6703	33007	33148	50649	50649					-0.04587576563608309
YEDLTQVL	8	Unmodified	_YEDLTQVL_					0	0	0		ENST00000216039.9_1_22:39083550-39083643:-|nuORF	ENST00000216039.9_1_22:39083550-39083643:-|nuORF	ENST00000216039.9_1_22:39083550-39083643:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.7500915527344	2	490.75039	979.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.732	1	35.732	35.232	36.232	0								0	0	0	1.7419	1	13422	13422		87.696	10.379	1				50006	8157	33008	33149	50650	50650					-0.004336449219067617
YEDNNYKAL	9	Unmodified	_YEDNNYKAL_					0	0	0		ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.L467Wfs*41|1|0.26|ENSG00000165029|chr9:104832683-104832683|A/-|frameshift_variant;ABCA1|p.G751Afs*77|1|0.1|ENSG00000165029|chr9:104827033-104827033|C/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	565.2622680664062	2	565.261653	1128.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.253	1	28.253	27.753	28.753	0								0	0	0	0.29356	1	8805	8805		36.447	11.928	1				50007	2	33009	33150	50651	50651					-0.050360455242980606
YEDQTKPVL	9	Unmodified	_YEDQTKPVL_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.7836303710938	2	546.782222	1091.54989	1.2136	0.00066357	-0.2001	-0.00010941	1.0135	0.00055416	546.7822343767176	28.365	0.18923	28.365	28.296	28.485	0					8	6	2	0	0	0	0.24334	1	8848	8848		56.434	5.0983	1	69432			50008	4801	33010	33151	50652	50652					0.007777155151870829
YEDQTKPVL	9	Unmodified	_YEDQTKPVL_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7824096679688	2	546.782222	1091.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.661	1	28.661	28.161	29.161	0								0	0	0	0.029433	1	10153	10153		96.034	27.247	1				50009	4801	33010	33151	50653	50653					0.007777155151870829
YEDQTKPVL	9	Unmodified	_YEDQTKPVL_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7828979492188	2	546.782222	1091.54989	-1.5034	-0.00082204	-0.78114	-0.00042711	-2.2845	-0.0012492	547.28273052841	28.348	0.38357	28.348	28.176	28.56	0					19	9	3	0	0	0	0.098791	1	9463	9463		79.713	15.505	1	328300			50010	4801	33010	33151	50654	50654					0.007777155151870829
YEDSLLDHCI	10	Unmodified	_YEDSLLDHCI_					0	0	0		ENSG00000101695|ENST00000217740|RNF125;ENST00000580209.1_1_18:29617215-29646074:+|nuORF;ENST00000583184.1_1_18:29598826-29691722:+|nuORF	ENSG00000101695|ENST00000217740|RNF125	ENSG00000101695|ENST00000217740|RNF125	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	604.266845703125	2	604.268621	1206.52269	-1.908	-0.001153	-0.61915	-0.00037413	-2.5272	-0.0015271	604.2682663263994	31.246	0.45447	31.246	31.02	31.475	0					31	12	3	0	0	0	0.4943	1	10679	10679		45.952	15.448	1	643860			50011	2133	33011	33152	50655	50655					-0.07231136087466439
YEDSNDEF	8	Unmodified	_YEDSNDEF_					0	0	0			REV__CSE1L|p.E367D|1|0.14|ENSG00000124207|chr20:49074819-49074819|G/C|missense_variant	REV__CSE1L|p.E367D|1|0.14|ENSG00000124207|chr20:49074819-49074819|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.6849670410156	2	509.685444	1017.35634	-0.41197	-0.00020997	-0.58312	-0.00029721	-0.99508	-0.00050718	509.68498846138436	14.8	0.16391	14.8	14.714	14.878	0					7	3	3	0	0	0	0.7887	1	3942	3942		12.959	0	1	262030	+		50012	12638	33012	33153	50656	50656					-0.15164865991698662
YEEAALRCY	9	Unmodified	_YEEAALRCY_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.2509765625	2	559.252774	1116.491	1.768	0.00098878	-3.4921	-0.001953	-1.724	-0.00096418	559.2504288095466	41.029	0.24989	41.029	40.922	41.172	0					11	9	2	0	0	0	0.48389	1	16134	16134		34.173	0.65696	1	43543			50013	7233	33013	33154	50657	50657					-0.06259084050793717
YEEATCAQAL	10	Unmodified	_YEEATCAQAL_					0	0	0		SLFN14|p.P780S|1|0.11|ENSG00000236320|chr17:35548640-35548640|G/A|missense_variant;nc|ENSG00000236320|P0C7P3-2|SLFN14;ENSG00000236320|ENST00000674182|SLFN14	SLFN14|p.P780S|1|0.11|ENSG00000236320|chr17:35548640-35548640|G/A|missense_variant	SLFN14|p.P780S|1|0.11|ENSG00000236320|chr17:35548640-35548640|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.7432861328125	2	549.742239	1097.46993	-1.4672	-0.0008066	3.2014	0.00176	1.7342	0.00095335	549.7436904588762	32.575	0.12975	32.575	32.529	32.659	0					8	4	2	0	0	0	0.49411	1	11348	11348		45.972	3.5761	1	74504			50014	7908	33014	33155	50658	50658					-0.07491094150327626
YEEDPRKY	8	Unmodified	_YEEDPRKY_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	550.2571411132812	2	550.256371	1098.49819	0.32432	0.00017846	-0.081842	-4.5034E-05	0.24248	0.00013343	550.2563185212957	29.333	0.22752	29.333	29.184	29.411	0					15	9	2	0	0	0	0.61938	1	9516	9516		45.952	1.8352	1	113540	+		50015	16601	33015	33156	50659	50659					-0.0471202817871017
YEEEIKVL	8	Unmodified	_YEEEIKVL_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000561242.1_1_15:63353867-63354482:+|nuORF	nc|ENSG00000140416|P09493-2|TPM1	nc|ENSG00000140416|P09493-2|TPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7738037109375	2	511.773865	1021.53318	1.0266	0.00052539	0.33458	0.00017123	1.3612	0.00069662	511.77311502381394	38.382	0.19123	38.382	38.312	38.503	0					10	6	2	0	0	0	0.5535	1	14582	14582		54.776	15.755	1	47870			50016	11552	33016	33157	50660	50660					0.023272146292583784
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.7642822265625	2	540.764029	1079.5135	0.04247	2.2966E-05	1.6169	0.00087437	1.6594	0.00089734	540.7650094703672	34.64	0.2871	34.64	34.567	34.854	0					28	13	3	0	0	0	0.53709	2	11701	11701;11733		56.434	0	1	233460			50017	6531	33017	33158	50661;50662	50661					-0.02307161381509104
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7642822265625	2	540.764029	1079.5135	1.9964	0.0010796	-0.77673	-0.00042003	1.2197	0.00065956	540.7636306426931	34.852	0.42118	34.852	34.727	35.148	0					36	12	4	0	0	0	0.27565	1	13463	13463		90.601	0	1	1699200			50018	6531	33017	33158	50663	50663					-0.02307161381509104
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7640991210938	2	540.764029	1079.5135	1.0394	0.00056205	0.32956	0.00017821	1.3689	0.00074026	540.764399131709	34.643	0.27213	34.643	34.531	34.803	0					17	8	3	0	0	0	0.36488	1	12277	12277		75.043	0	1	247150			50019	6531	33017	33158	50664	50664					-0.02307161381509104
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	540.7643432617188	2	540.764029	1079.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.616	1	34.616	34.116	35.116	0								0	0	0	1.7419	1	12269	12269		90.601	0	1				50020	6531	33017	33158	50665	50665					-0.02307161381509104
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.76416015625	2	540.764029	1079.5135	2.0802	0.0011249	-0.2628	-0.00014211	1.8174	0.0009828	540.7639481446619	34.775	0.41348	34.775	34.668	35.081	0					19	8	3	0	0	0	0.24999	1	13372	13372		101.25	0	1	2121800			50021	6531	33017	33158	50666	50666					-0.02307161381509104
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7635498046875	2	540.764029	1079.5135	3.5093	0.0018977	-3.3643	-0.0018193	0.14502	7.842E-05	540.7620397309832	34.765	0.46189	34.765	34.651	35.113	0					27	9	6	0	0	0	0.27565	1	13388	13388		90.601	0	1	1973300			50022	6531	33017	33158	50667	50667					-0.02307161381509104
YEEEMREL	8	Unmodified	_YEEEMREL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	549.7434692382812	2	549.742239	1097.46993	0.34711	0.00019082	1.5678	0.00086189	1.9149	0.0010527	549.7428874370527	32.613	0.17174	32.613	32.49	32.662	0					11	7	2	0	0	0	0.63854	1	10882	10882		42.864	13.023	1	83439			50023	1132	33018	33159	50668	50668					-0.07491094150304889
YEEEMREL	8	Unmodified	_YEEEMREL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.742431640625	2	549.742239	1097.46993	1.712	0.00094118	-1.1517	-0.00063312	0.56037	0.00030806	549.7417273245464	32.793	0.37682	32.793	32.555	32.932	0					21	9	4	0	0	0	0.28444	1	12491	12491		87.696	23.489	1	473720			50024	1132	33018	33159	50669	50669					-0.07491094150304889
YEEEMREL	8	Unmodified	_YEEEMREL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.7424926757812	2	549.742239	1097.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.601	1	32.601	32.101	33.101	0								0	0	0	1.7419	1	11354	11354		44.377	11.565	1				50025	1132	33018	33159	50670	50670					-0.07491094150304889
YEEEMREL	8	Unmodified	_YEEEMREL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7424926757812	2	549.742239	1097.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.791	1	32.791	32.291	33.291	0								0	0	0	1.7419	1	12395	12395		42.864	8.6917	1				50026	1132	33018	33159	50671	50671					-0.07491094150304889
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	380.2045593261719	3	380.204528	1137.59175	0.1697	6.452E-05	-0.22958	-8.7286E-05	-0.059879	-2.2766E-05	380.2044314019237	23.389	0.1925	23.389	23.294	23.486	0					8	4	3	0	0	0	0.41958	1	7730	7730		63.426	23.368	1	563980			50027	874	33019	33160	50672	50672					0.028462712037480742
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	569.8041381835938	2	569.803154	1137.59175	0.10236	5.8327E-05	0.38738	0.00022073	0.48974	0.00027906	569.8034080410412	23.152	0.21733	23.152	23.066	23.283	0					12	7	2	0	0	0	0.04067	1	6900	6900		98.582	40.771	1	174620			50028	874	33019	33160	50673	50673					0.028462712037480742
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.8032836914062	2	569.803154	1137.59175	1.9792	0.0011278	-1.9362	-0.0011032	0.043009	2.4507E-05	569.8022042264893	23.304	0.41638	23.304	23.246	23.663	0					13	8	2	0	0	0	0.0063888	1	8021	8021		152.06	66.9	1	1353000			50029	874	33019	33160	50674	50674					0.028462712037480742
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.8035278320312	2	569.803154	1137.59175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.188	1	23.188	22.688	23.688	0								0	0	0	0.051298	1	7035	7035		85.862	36.326	1				50030	874	33019	33160	50675	50675					0.028462712037480742
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.8031005859375	2	569.803154	1137.59175	-1.3397	-0.00076334	1.1761	0.00067016	-0.16352	-9.3174E-05	569.8037942929385	23.159	0.13887	23.159	23.064	23.203	0					8	3	3	0	0	0	0.082776	1	7026	7026		83.647	28.871	1	177030			50031	874	33019	33160	50676	50676					0.028462712037480742
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.8034057617188	2	569.803154	1137.59175	1.6248	0.00092583	-0.90952	-0.00051825	0.71531	0.00040759	569.8025881294283	23.276	0.21684	23.276	23.218	23.435	0					12	4	4	0	0	0	0.022698	1	7883	7883		117.53	50.032	1	630370			50032	874	33019	33160	50677	50677					0.028462712037480742
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.803955078125	2	569.803154	1137.59175	3.436	0.0019578	-3.2508	-0.0018523	0.18519	0.00010552	569.8012429569609	23.31	0.46754	23.31	23.1	23.568	0					15	9	2	0	0	0	0.037712	1	7895	7895		101.46	41.342	1	1231500			50033	874	33019	33160	50678	50678					0.028462712037480742
YEEGPGKNL	9	Unmodified	_YEEGPGKNL_					0	0	0		ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	503.74560546875	2	503.745639	1005.47673	-0.057199	-2.8814E-05	0.22733	0.00011452	0.17013	8.5703E-05	503.7457823181702	24.328	0.34739	24.328	24.087	24.435	0					20	11	2	0	0	0	0.28897	1	7133	7133		51.193	3.5354	1	165270			50034	3500	33020	33161	50679	50679					-0.025794132074224763
YEEGPGKNL	9	Unmodified	_YEEGPGKNL_					0	0	0		ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.7455139160156	2	503.745639	1005.47673	-0.060281	-3.0366E-05	0.081699	4.1156E-05	0.021418	1.0789E-05	503.74558404846306	24.574	0.48781	24.574	24.253	24.741	0					31	11	4	0	0	0	0.048471	1	8277	8277		95.815	19.041	1	766060			50035	3500	33020	33161	50680	50680					-0.025794132074224763
YEEGPGKNL	9	Unmodified	_YEEGPGKNL_					0	0	0		ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.74566650390625	2	503.745639	1005.47673	-0.47387	-0.00023871	0.73299	0.00036924	0.25912	0.00013053	503.74595197957166	24.585	0.46781	24.585	24.278	24.746	0					26	9	4	0	0	0	0.021961	1	8608	8608		118.74	13.997	1	729280			50036	3500	33020	33161	50681	50681					-0.025794132074224763
YEEKISVL	8	Unmodified	_YEEKISVL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.76617431640625	2	490.768583	979.522613	0.81706	0.00040099	-3.8484	-0.0018887	-3.0314	-0.0014877	490.76626315246773	36.943	0.44043	36.943	36.674	37.115	0					22	12	3	0	0	0	0.5535	1	13951	13951		54.776	3.4409	1	171810			50037	4631	33021	33162	50682	50682					0.032032319747941074
YEEKISVL	8	Unmodified	_YEEKISVL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.76922607421875	2	490.768583	979.522613	-0.066605	-3.2688E-05	-0.32028	-0.00015719	-0.38689	-0.00018987	490.7683665125028	36.907	0.20585	36.907	36.809	37.015	0					9	6	2	0	0	0	0.32597	1	14400	14400		79.713	13.283	1	123510			50038	4631	33021	33162	50683	50683					0.032032319747941074
YEEKISVL	8	Unmodified	_YEEKISVL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.76885986328125	2	490.768583	979.522613	-0.54993	-0.00026989	0.2752	0.00013506	-0.27473	-0.00013483	490.76874342195936	36.838	0.31293	36.838	36.727	37.04	0					12	6	2	0	0	0	0.50061	1	14338	14338		60.118	6.7668	1	329970			50039	4631	33021	33162	50684	50684					0.032032319747941074
YEELVRMV	8	Unmodified	_YEELVRMV_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7686767578125	2	519.76806	1037.52157	1.4089	0.00073231	-1.5257	-0.00079302	-0.11681	-6.0712E-05	519.7675889918073	41.33	0.22981	41.33	41.272	41.502	0					18	11	3	0	0	0	0.37144	1	15722	15722		74.255	26.598	1	171540			50040	11453	33022	33163	50685	50685					0.004306943342726299
YEELVRMV	8	Unmodified	_YEELVRMV_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.7685546875	2	519.76806	1037.52157	1.6569	0.00086118	-1.8145	-0.0009431	-0.1576	-8.1916E-05	519.7676345860045	41.309	0.22427	41.309	41.236	41.46	0					23	10	3	0	0	0	0.37144	1	16241	16241		74.255	15.473	1	149110			50041	11453	33022	33163	50686	50686					0.004306943342726299
YEELVRMV	8	Unmodified	_YEELVRMV_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7686157226562	2	519.76806	1037.52157	1.6157	0.00083977	-0.81059	-0.00042132	0.80507	0.00041845	519.767716212083	41.274	0.34678	41.274	41.103	41.449	0					15	8	3	0	0	0	0.27635	1	16416	16416		90.37	10.919	1	457070			50042	11453	33022	33163	50687	50687					0.004306943342726299
YEENAKAEL	9	Unmodified	_YEENAKAEL_					0	0	0		BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENSG00000125124|ENST00000245157|BBS2	BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant	BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7564086914062	2	533.756204	1065.49785	2.301	0.0012282	-1.432	-0.00076431	0.86907	0.00046387	533.7551827387622	26.045	0.13864	26.045	25.957	26.096	0					8	3	3	0	0	0	0.032383	1	8950	8950		106.68	13.54	1	358040			50043	282	33023	33164	50688	50688					-0.03227447898552782
YEENAKAEL	9	Unmodified	_YEENAKAEL_					0	0	0		BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENSG00000125124|ENST00000245157|BBS2	BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant	BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.756591796875	2	533.756204	1065.49785	1.7495	0.00093383	-0.17879	-9.5431E-05	1.5708	0.0008384	533.7559707027438	26.026	0.31096	26.026	25.874	26.185	0					9	6	2	0	0	0	0.047855	1	9279	9279		96.034	8.3372	1	962570			50044	282	33023	33164	50689	50689					-0.03227447898552782
YEENAKAEL	9	Unmodified	_YEENAKAEL_					0	0	0		BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENSG00000125124|ENST00000245157|BBS2	BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant	BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.756591796875	2	533.756204	1065.49785	1.8077	0.00096489	-0.52129	-0.00027824	1.2864	0.00068664	533.7558878819491	25.992	0.31971	25.992	25.882	26.202	0					10	6	3	0	0	0	0.015496	1	9139	9139		129.42	13.927	1	935500			50045	282	33023	33164	50690	50690					-0.03227447898552782
YEENSHLTSV	10	Unmodified	_YEENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	590.2716674804688	2	589.769842	1177.52513	-0.44946	-0.00026508	-0.0020304	-1.1975E-06	-0.45149	-0.00026627	589.7697657565807	27.479	0.11706	27.479	27.383	27.501	0					7	4	2	0	0	0	0.30252	1	8752	8752		66.962	26.904	1	128950			50046	5221	33024	33165	50691	50691					-0.05652964358182544
YEENSHLTSV	10	Unmodified	_YEENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.7699584960938	2	589.769842	1177.52513	1.4802	0.000873	-1.7944	-0.0010583	-0.31419	-0.0001853	589.768701691185	27.704	0.16274	27.704	27.601	27.764	0					9	3	4	0	0	0	0.011557	1	10082	10082		136.99	73.455	1	734300			50047	5221	33024	33165	50692	50692					-0.05652964358182544
YEENSHLTSV	10	Unmodified	_YEENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	589.7698974609375	2	589.769842	1177.52513	0.5256	0.00030998	0.41893	0.00024707	0.94453	0.00055706	589.7702623700893	27.54	0.17522	27.54	27.454	27.629	0					8	4	3	0	0	0	0.092915	1	9016	9016		96.665	64.71	1	125320			50048	5221	33024	33165	50693	50693					-0.05652964358182544
YEENSHLTSV	10	Unmodified	_YEENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.769775390625	2	589.769842	1177.52513	1.3073	0.00077103	-1.3301	-0.00078442	-0.022718	-1.3398E-05	589.7690290715545	27.654	0.27038	27.654	27.543	27.813	0					15	5	4	0	0	0	0.012356	1	9934	9934		133.99	71.886	1	986790			50049	5221	33024	33165	50694	50694					-0.05652964358182544
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	522.7362060546875	2	522.735271	1043.45599	1.527	0.00079819	0.84722	0.00044287	2.3742	0.0012411	522.735741632719	27.42	0.36011	27.42	27.211	27.571	0					21	13	2	0	0	0	0.39125	1	8423	8423		71.877	9.7701	1	229690			50050	1019	33025	33166	50695	50695					-0.064000035871004
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	522.7354125976562	2	522.735271	1043.45599	0.44309	0.00023162	2.0744	0.0010843	2.5175	0.001316	522.7364666392883	27.419	0.42439	27.419	27.196	27.62	0					30	15	3	0	0	0	0.28444	1	8713	8713		87.696	32.92	1	398360			50051	1019	33025	33166	50696	50696					-0.064000035871004
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.7374877929688	2	522.735271	1043.45599	1.7976	0.00093968	0.77113	0.0004031	2.5688	0.0013428	522.7359132736206	27.7	0.55925	27.7	27.355	27.915	0					28	11	3	0	0	0	0.28444	1	10011	10011		87.696	2.5356	1	1521700			50052	1019	33025	33166	50697	50697					-0.064000035871004
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7354125976562	2	522.735271	1043.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.428	1	27.428	26.928	27.928	0								0	0	0	1.7419	1	8971	8971		54.776	8.8244	1				50053	1019	33025	33166	50698	50698					-0.064000035871004
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7357177734375	2	522.735271	1043.45599	0.44213	0.00023112	0.045862	2.3974E-05	0.48799	0.00025509	522.7355402453788	27.62	0.47391	27.62	27.255	27.729	0					13	9	2	0	0	0	0.50061	1	9921	9921		60.118	24.5	1	269360			50054	1019	33025	33166	50699	50699					-0.064000035871004
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7364501953125	2	522.735271	1043.45599	3.4054	0.0017801	-0.71983	-0.00037628	2.6856	0.0014039	522.7352738536329	27.62	0.42357	27.62	27.373	27.797	0					18	8	3	0	0	0	0.26795	1	9902	9902		93.143	34.361	1	736050			50055	1019	33025	33166	50700	50700					-0.064000035871004
YEEQKNSF	8	Unmodified	_YEEQKNSF_					0	0	0		ENSG00000187944|ENST00000342506|C2orf66;nc|nan|Q6UXQ4|C2orf66	ENSG00000187944|ENST00000342506|C2orf66	ENSG00000187944|ENST00000342506|C2orf66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7393798828125	2	522.735271	1043.45599	1.6582	0.00086682	0.51953	0.00027157	2.1778	0.0011384	522.7355721768294	27.629	0.56017	27.629	27.335	27.895	0					37	13	4	0	0	0	0.36488	1	9628	9628		75.043	7.5496	1	1517100			50056	7225	33026	33167	50701	50701					-0.064000035871004
YEEQKNSF	8	Unmodified	_YEEQKNSF_					0	0	0		ENSG00000187944|ENST00000342506|C2orf66;nc|nan|Q6UXQ4|C2orf66	ENSG00000187944|ENST00000342506|C2orf66	ENSG00000187944|ENST00000342506|C2orf66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.7408447265625	2	522.735271	1043.45599	1.0906	0.00057011	2.0674	0.0010807	3.158	0.0016508	522.7366943324186	27.476	0.37978	27.476	27.249	27.629	0					24	9	3	0	0	0	0.41	1	8940	8940		69.628	5.4204	1	281850			50057	7225	33026	33167	50702	50702					-0.064000035871004
YEERVQAV	8	Unmodified	_YEERVQAV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	497.2540283203125	2	497.253631	992.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.017	1	25.017	24.517	25.517	0								0	0	0	1.7419	1	7472	7472		40.778	1.972	1				50058	2899	33027	33168	50703	50703					-0.003837069705241447
YEERVQAVV	9	Unmodified	_YEERVQAVV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	546.7890014648438	2	546.787838	1091.56112	0.46095	0.00025204	1.1793	0.00064484	1.6403	0.00089689	546.7886220060587	30.312	0.1746	30.312	30.247	30.422	0					16	5	4	0	0	0	0.21263	1	9948	9948		60.118	14.166	1	420070			50059	2899	33028	33169	50704	50704					0.01900537609321873
YEERVQAVV	9	Unmodified	_YEERVQAVV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.7884521484375	2	546.787838	1091.56112	1.8535	0.0010135	-1.3817	-0.00075552	0.47178	0.00025796	546.7871684066065	30.555	0.33839	30.555	30.263	30.601	0					18	7	4	0	0	0	0.18505	1	11423	11423		56.434	9.977	1	2023500			50060	2899	33028	33169	50705	50705					0.01900537609321873
YEERVQAVV	9	Unmodified	_YEERVQAVV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.788818359375	2	546.787838	1091.56112	1.1348	0.00062048	-0.0050926	-2.7846E-06	1.1297	0.00061769	546.7881381050624	30.335	0.15216	30.335	30.251	30.403	0					10	3	4	0	0	0	0.21419	1	10308	10308		52.937	12.159	1	245710			50061	2899	33028	33169	50706	50706					0.01900537609321873
YEERVQAVV	9	Unmodified	_YEERVQAVV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.7891845703125	2	546.787838	1091.56112	-1.5024	-0.00082152	3.2121	0.0017563	1.7096	0.0009348	546.7897076808604	30.327	0.188	30.327	30.243	30.431	0					10	4	3	0	0	0	0.38666	1	10322	10322		42.864	5.0528	1	421860			50062	2899	33028	33169	50707	50707					0.01900537609321873
YEERVQAVV	9	Unmodified	_YEERVQAVV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7888793945312	2	546.787838	1091.56112	1.907	0.0010427	-0.63741	-0.00034853	1.2696	0.0006942	546.7876073324898	30.485	0.45014	30.485	30.23	30.68	0					27	9	4	0	0	0	0.090954	1	11300	11300		75.043	23.851	1	2380100			50063	2899	33028	33169	50708	50708					0.01900537609321873
YEEVARKL	8	Unmodified	_YEEVARKL_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;ENST00000473036.2_1_1:154145382-154155604:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000391998.3_1_19:53982901-53983033:+|nuORF;ENST00000604975.1_1_9:35685264-35689844:-|nuORF;ENST00000469717.5_1_1:154145382-154155531:-|nuORF;TPM1|p.R160C|1|0.32|ENSG00000140416|chr15:63059666-63059666|C/T|missense_variant;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.2799072265625	2	504.279649	1006.54475	1.0314	0.00052009	-0.24374	-0.00012291	0.78761	0.00039717	504.27988391574826	23.053	0.66778	23.053	22.944	23.612	0					40	13	5	0	0	0	0.27635	1	7875	7875		90.37	18.492	1	39624000		+	50064	11631;11552;11562;11715	33029	33170	50709	50709					0.04173456443231771
YEEVARKL	8	Unmodified	_YEEVARKL_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;ENST00000473036.2_1_1:154145382-154155604:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000391998.3_1_19:53982901-53983033:+|nuORF;ENST00000604975.1_1_9:35685264-35689844:-|nuORF;ENST00000469717.5_1_1:154145382-154155531:-|nuORF;TPM1|p.R160C|1|0.32|ENSG00000140416|chr15:63059666-63059666|C/T|missense_variant;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.27960205078125	2	504.279649	1006.54475	0.11939	6.0207E-05	-0.2172	-0.00010953	-0.097803	-4.932E-05	504.27954235496475	22.915	0.26888	22.915	22.825	23.094	0					18	6	4	0	0	0	0.2451	1	6897	6897		110.12	13.929	1	3689600		+	50065	11631;11552;11562;11715	33029	33170	50710	50710					0.04173456443231771
YEEVARKL	8	Unmodified	_YEEVARKL_					0	0	0		nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;ENST00000473036.2_1_1:154145382-154155604:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000391998.3_1_19:53982901-53983033:+|nuORF;ENST00000604975.1_1_9:35685264-35689844:-|nuORF;ENST00000469717.5_1_1:154145382-154155531:-|nuORF;TPM1|p.R160C|1|0.32|ENSG00000140416|chr15:63059666-63059666|C/T|missense_variant;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000167460|P67936-2|TPM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2796630859375	2	504.279649	1006.54475	1.2045	0.00060742	-1.5177	-0.00076534	-0.31315	-0.00015791	504.2789731956718	23.03	0.7117	23.03	22.922	23.634	0					44	14	5	0	0	0	0.25143	1	7757	7757		98.629	13.714	1	18579000		+	50066	11631;11552;11562;11715	33029	33170	50711	50711					0.04173456443231771
YEFTEEAQ	8	Unmodified	_YEFTEEAQ_					0	0	0		ENST00000261653.10_1_12:131276234-131276321:-|nuORF	ENST00000261653.10_1_12:131276234-131276321:-|nuORF	ENST00000261653.10_1_12:131276234-131276321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.71453857421875	2	508.714005	1015.41346	-0.42941	-0.00021845	0.37004	0.00018824	-0.059376	-3.0206E-05	508.7146553057563	17.073	0.15394	17.073	17.014	17.168	0					10	5	3	0	0	0	0.66372	1	4202	4202		38.806	2.3594	1	209970			50067	8298	33030	33171	50712	50712					-0.09363398715333915
YEFTEEAQ	8	Unmodified	_YEFTEEAQ_					0	0	0		ENST00000261653.10_1_12:131276234-131276321:-|nuORF	ENST00000261653.10_1_12:131276234-131276321:-|nuORF	ENST00000261653.10_1_12:131276234-131276321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.7138671875	2	508.714005	1015.41346	-0.3967	-0.00020181	-0.66424	-0.00033791	-1.0609	-0.00053972	508.71406106248406	17.293	0.25235	17.293	17.183	17.435	0					9	5	3	0	0	0	0.67394	1	5119	5119		37.159	0	1	1339100			50068	8298	33030	33171	50713	50713					-0.09363398715333915
YEGAKVKVL	9	Unmodified	_YEGAKVKVL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	503.8000793457031	2	503.800217	1005.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.009	1	27.009	26.509	27.509	0								0	0	0	0.24544	1	8558	8558		44.377	0	1				50069	4171	33031	33172	50714	50714					0.08331217482702868
YEGGISRQ	8	Unmodified	_YEGGISRQ_					0	0	0		ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	455.22454833984375	2	455.224874	908.435195	0.72733	0.0003311	-1.1916	-0.00054244	-0.46425	-0.00021134	455.2243679252388	16.414	0.18642	16.414	16.318	16.504	0					7	4	2	0	0	0	0.5676	1	4458	4458		53.351	10.955	1	226430			50070	953	33032	33173	50715	50715					-0.022685491760853438
YEGKVSSV	8	Unmodified	_YEGKVSSV_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.7245178222656	2	434.724175	867.433798	0.10265	4.4626E-05	-0.51212	-0.00022263	-0.40946	-0.000178	434.7240885040571	21.155	0.23371	21.155	21.064	21.298	0					7	5	2	0	0	0	0.63854	1	6689	6689		42.864	2.0861	1	69143			50071	7590	33033	33174	50716	50716					-0.005221832648430791
YEGKVSSV	8	Unmodified	_YEGKVSSV_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.72406005859375	2	434.724175	867.433798	-0.44348	-0.00019279	-0.32623	-0.00014182	-0.76971	-0.00033461	434.72406759960825	21.075	0.11555	21.075	20.98	21.095	0					4	2	2	0	0	0	0.66989	1	6927	6927		37.812	5.8567	1	106760			50072	7590	33033	33174	50717	50717					-0.005221832648430791
YEGLYKAFQ	9	Unmodified	_YEGLYKAFQ_					0	0	0		ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B;FAM161B|p.N537Efs*5|1|0.35|ENSG00000156050|chr14:73938094-73938095|-/T|frameshift_variant	ENSG00000156050|ENST00000286544|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	559.77880859375	2	559.779482	1117.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.687	1	43.687	43.187	44.187	0								0	0	0	0.30504	1	16451	16451		34.173	3.6689	1				50073	5153	33034	33175	50718	50718					-0.009659632766215509
YEGPELIYP	9	Unmodified	_YEGPELIYP_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.7647705078125	2	540.76604	1079.51753	1.6649	0.00090033	-2.2869	-0.0012367	-0.62197	-0.00033634	540.7650909455739	34.567	0.20029	34.567	34.513	34.714	0					11	8	2	0	0	0	0.37197	1	11312	11312		44.117	1.7207	1	79794	+		50074	16642	33035	33176	50719	50719					-0.01905071887813392
YEGSPIKVTL	10	Unmodified	_YEGSPIKVTL_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;nc|ENSG00000181163|P06748-3|NPM1;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	553.80810546875	2	553.808239	1105.60193	0.61551	0.00034087	-0.56	-0.00031013	0.055507	3.074E-05	553.8078952817202	40.664	0.22923	40.664	40.53	40.759	0					15	10	2	0	0	0	0.30252	1	15490	15490		66.962	6.8437	1	219550			50075	6841	33036	33177	50720	50720					0.05334878928965736
YEGTGRSL	8	Unmodified	_YEGTGRSL_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	441.7194519042969	2	441.719424	881.424296	-0.52574	-0.00023223	0.69687	0.00030782	0.17113	7.5592E-05	441.7196661994844	21.848	0.16453	21.848	21.738	21.903	0					5	3	2	0	0	0	0.57171	1	7190	7190		52.937	3.4952	1	366440			50076	3988	33037	33178	50721	50721					-0.02115951550376849
YEGYALPHA	9	Unmodified	_YEGYALPHA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000184009|ENST00000573283|ACTG1	ENSG00000184009|ENST00000573283|ACTG1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.74237060546875	2	510.742899	1019.47125	0.0042261	2.1584E-06	-0.60142	-0.00030717	-0.5972	-0.00030501	510.74295013880726	34.819	0.41318	34.819	34.635	35.048	0					17	8	3	0	0	0	0.21116	1	13433	13433		60.294	29.79	1	137110			50077	1545;6995;2493	33038	33179	50722	50722					-0.037710919992491654
YEHHRESPC	9	Unmodified	_YEHHRESPC_					0	0	0		ENST00000571392.1_1_16:72050863-72057137:+|nuORF;ENST00000573922.5_1_16:72046155-72057137:+|nuORF	ENST00000571392.1_1_16:72050863-72057137:+|nuORF	ENST00000571392.1_1_16:72050863-72057137:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	579.2457885742188	2	579.243272	1156.47199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.766	1	18.766	18.266	19.266	0								0	0	0	0.35507	1	5816	5816		24.203	3.2558	1				50078	10802	33039	33180	50723	50723					-0.09998620621809096
YEHPKDLKL	9	Unmodified	_YEHPKDLKL_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	381.545166015625	3	381.544996	1141.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.244	1	25.244	24.744	25.744	0								0	0	0	0.20989	1	7574	7574		49.536	20.386	1				50079	4769	33040	33181	50724	50724					0.04801701023075111
YEHPKDLKL	9	Unmodified	_YEHPKDLKL_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	381.5448913574219	3	381.544996	1141.61316	0.13283	5.0679E-05	-0.21142	-8.0665E-05	-0.078591	-2.9986E-05	381.5449006977616	25.491	0.5127	25.491	25.362	25.874	0					21	10	3	0	0	0	0.12278	1	8706	8706		74.165	22.637	1	582620			50080	4769	33040	33181	50725	50725					0.04801701023075111
YEHPKDLKL	9	Unmodified	_YEHPKDLKL_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	381.5453186035156	3	381.544996	1141.61316	0.45296	0.00017283	-0.71669	-0.00027345	-0.26372	-0.00010062	381.8788895580418	25.484	0.16021	25.484	25.426	25.586	0					6	3	2	0	0	0	0.3269	1	9062	9062		47.96	11.513	1	322560			50081	4769	33040	33181	50726	50726					0.04801701023075111
YEHSCPLKRL	10	Unmodified	_YEHSCPLKRL_					0	0	0			REV__ENST00000558657.1_1_15:50088089-50088203:+|nuORF	REV__ENST00000558657.1_1_15:50088089-50088203:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	415.8857727050781	3	415.885135	1244.63358	0.9862	0.00041015	0.70695	0.00029401	1.6932	0.00070416	415.8853746838742	16.072	0.16627	16.072	15.962	16.128	0					5	3	2	0	0	0	0.7005	1	4532	4532		15.333	0	1	1051300	+		50082	14614	33041	33182	50727	50727					0.021045484112619306
YEIHDGMNL	9	Unmodified	_YEIHDGMNL_					0	0	0		ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.244873046875	2	546.244949	1090.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.887	1	37.887	37.387	38.387	0								0	0	0	0.080575	1	14391	14391		77.318	27.293	1				50083	7545	33042	33183	50728	50728					-0.06627370567821345
YEIHDGMNL	9	Unmodified	_YEIHDGMNL_					0	0	0		ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	ENSG00000198258|ENST00000586895|UBL5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.2454223632812	2	546.244949	1090.47534	1.8797	0.0010268	-1.1254	-0.00061472	0.75435	0.00041206	546.2444608779786	37.878	0.398	37.878	37.776	38.174	0					24	13	4	0	0	0	0.16002	1	14831	14831		66.429	16.988	1	433470			50084	7545	33042	33183	50729	50729					-0.06627370567821345
YEIIYYSV	8	Unmodified	_YEIIYYSV_					0	0	0			REV__PTPRS|p.V364I|1|0.12|ENSG00000105426|chr19:5244381-5244381|C/T|missense_variant	REV__PTPRS|p.V364I|1|0.12|ENSG00000105426|chr19:5244381-5244381|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2637329101562	2	525.263133	1048.51171	1.9077	0.001002	-1.0636	-0.00055864	0.84416	0.00044341	525.2627708781986	29.158	0.32783	29.158	29.007	29.334	0					26	8	4	0	0	0	0.70055	1	10363	10363		33.516	0.70317	1	417270	+		50085	21431	33043	33184	50730	50730					-0.010601703995007483
YEIPEGPR	8	Unmodified	_YEIPEGPR_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	480.7424621582031	2	480.742899	959.471246	-0.10925	-5.2521E-05	-0.64652	-0.00031081	-0.75577	-0.00036333	480.74263820113634	21.432	0.21814	21.432	21.374	21.592	0					6	4	2	0	0	0	0.58597	1	7120	7120		51.335	7.2187	1	156150			50086	4249	33044	33185	50731	50731					-0.010110919992371237
YEIVNRASL	9	Unmodified	_YEIVNRASL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.7905883789062	2	532.790381	1063.56621	3.4032	0.0018132	-2.6902	-0.0014333	0.71292	0.00037984	532.7889213597196	34.614	0.21093	34.614	34.506	34.717	0					7	4	2	0	0	0	0.24334	1	13295	13295		56.434	5.2411	1	859490			50087	7426	33045	33186	50732	50732					0.036968414719467546
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.2828979492188	2	554.779679	1107.5448	1.4159	0.00078552	-0.0072731	-4.035E-06	1.4086	0.00078149	554.7796167737347	21.115	0.40627	21.115	20.92	21.326	0					17	11	2	0	0	0	0.50858	1	5786	5786		31.53	0	1	54412			50088	1878	33046	33187	50733	50733					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	554.7802124023438	2	554.779679	1107.5448	1.8152	0.001007	0.6041	0.00033514	2.4193	0.0013422	554.7790357127668	21.434	0.65731	21.434	21.052	21.71	0					44	15	4	0	0	0	0.11411	1	6845	6845		76.17	26.634	1	667870			50089	1878	33046	33187	50734	50734					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7798461914062	2	554.779679	1107.5448	1.1358	0.00063011	-0.065136	-3.6136E-05	1.0706	0.00059397	554.7793822660984	21.237	0.42673	21.237	20.979	21.406	0					15	9	2	0	0	0	0.28504	1	6167	6167		51.528	13.716	1	81847			50090	1878	33046	33187	50735	50735					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.7801513671875	2	554.779679	1107.5448	1.0095	0.00056007	0.35295	0.00019581	1.3625	0.00075589	554.7797186343989	21.376	0.66052	21.376	20.943	21.603	0					31	13	3	0	0	0	0.063171	1	6950	6950		90.601	18.723	1	338500			50091	1878	33046	33187	50736	50736					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	554.780029296875	2	554.779679	1107.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.409	1	21.409	20.909	21.909	0								0	0	0	0.061959	1	6966	6966		82.75	18.543	1				50092	1878	33046	33187	50737	50737					-0.004665883474444854
YEKFLDIVEG	10	Unmodified	_YEKFLDIVEG_					0	0	0			REV__tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1	REV__tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.8761901855469	3	404.876411	1211.6074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.5	1	48.5	48	49	0								0	0	0	0.4201	1	17635	17635		22.58	11.483	1		+		50093	21870	33047	33188	50738	50738					0.010065577207342358
YEKGCEFVL	9	Carbamidomethyl (C)	_YEKGC(Carbamidomethyl (C))EFVL_	YEKGC(1)EFVL		YEKGC(48)EFVL		0	1	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	572.7717895507812	2	572.7708	1143.52705	0.075442	4.3211E-05	0.84115	0.00048178	0.91659	0.00052499	573.272545680391	39.524	0.28139	39.524	39.438	39.72	0					31	15	3	0	0	0	0.3269	1	13268	13268		47.96	14.038	1	166690			50094	1085	33048	33189	50739	50739	35				-0.03897626873936133
YEKGCEFVL	9	Unmodified	_YEKGCEFVL_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.2601318359375	2	544.260068	1086.50558	-1.4936	-0.00081293	1.4449	0.00078637	-0.04879	-2.6554E-05	544.2610719406085	42.415	0.19078	42.415	42.314	42.505	0					17	11	2	0	0	0	0.41113	1	14818	14818		40.778	5.1599	1	69647			50095	1085	33048	33190	50740	50740					-0.034210119026511165
YEKGDVSL	8	Unmodified	_YEKGDVSL_					0	0	0		ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.7290954589844	2	455.729458	909.444362	-0.42751	-0.00019483	0.17616	8.028E-05	-0.25135	-0.00011455	455.7296417652261	27.47	0.32104	27.47	27.357	27.678	0					11	6	3	0	0	0	0.32815	1	9847	9847		79.451	2.6769	1	204160			50096	6641	33049	33191	50741	50741					-0.013982006104129141
YEKGGILKV	9	Unmodified	_YEKGGILKV_					0	0	0		ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.80029296875	2	503.800217	1005.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.283	1	27.283	26.783	27.783	0								0	0	0	0.16453	1	9512	9512		56.434	8.7765	1				50097	7180	33050	33192	50742	50742					0.08331217482702868
YEKGGILKV	9	Unmodified	_YEKGGILKV_					0	0	0		ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	ENSG00000187097|ENST00000334696|ENTPD5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.2025146484375	3	336.20257	1005.58588	0.53511	0.00017991	-3.621	-0.0012174	-3.0859	-0.0010375	336.2023385033146	27.289	1.4297	27.289	26.845	28.275	0					49	29	3	0	0	0	0.25716	1	9860	9860		70.816	34.369	1	703170			50098	7180	33050	33192	50743	50743					0.08331217482702868
YEKILFTEA	9	Unmodified	_YEKILFTEA_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	557.2938842773438	2	557.294965	1112.57538	0.55305	0.00030821	-0.46417	-0.00025868	0.08888	4.9532E-05	557.2946703824275	40.409	0.15275	40.409	40.325	40.477	0					12	6	2	0	0	0	0.14578	1	15386	15386		68.846	21.189	1	132710			50099	1933	33051	33193	50744	50744					0.023591900376459307
YEKILFTEA	9	Unmodified	_YEKILFTEA_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.2945556640625	2	557.294965	1112.57538	1.7187	0.00095783	-0.99376	-0.00055382	0.72494	0.00040401	557.2945869138132	40.393	0.29692	40.393	40.273	40.57	0					22	12	3	0	0	0	0.21419	1	15891	15891		59.931	5.1545	1	293510			50100	1933	33051	33193	50745	50745					0.023591900376459307
YEKILFTEA	9	Unmodified	_YEKILFTEA_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.29541015625	2	557.294965	1112.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.33	1	40.33	39.83	40.83	0								0	0	0	0.040385	1	16005	16005		90.601	35.825	1				50101	1933	33051	33193	50746	50746					0.023591900376459307
YEKILFTEA	9	Unmodified	_YEKILFTEA_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	557.29541015625	2	557.294965	1112.57538	3.495	0.0019477	-3.2952	-0.0018364	0.19981	0.00011135	557.2930916995023	40.334	0.49765	40.334	40.08	40.578	0					23	11	3	0	0	0	0.067603	1	15993	15993		89.029	43.057	1	537340			50102	1933	33051	33193	50747	50747					0.023591900376459307
YEKILVAL	8	Unmodified	_YEKILVAL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.79156494140625	2	474.791861	947.569169	-0.45996	-0.00021839	0.14561	6.9133E-05	-0.31436	-0.00014925	474.7919299490934	43.959	0.13979	43.959	43.9	44.04	0					10	7	2	0	0	0	0.6088	1	16536	16536		47.657	8.8512	1	100460			50103	3957	33052	33194	50748	50748					0.09328716596769482
YEKILVAL	8	Unmodified	_YEKILVAL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7910461425781	2	474.791861	947.569169	0.6135	0.00029129	-1.1215	-0.0005325	-0.50805	-0.00024122	474.79116913313794	43.958	0.15703	43.958	43.853	44.01	0					10	7	2	0	0	0	0.58597	1	17144	17144		51.335	3.4199	1	77733			50104	3957	33052	33194	50749	50749					0.09328716596769482
YEKILVKN	8	Unmodified	_YEKILVKN_					0	0	0			REV__ENSG00000180543|ENST00000322128|TSPYL5	REV__ENSG00000180543|ENST00000322128|TSPYL5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7999572753906	2	503.800217	1005.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.286	1	27.286	26.786	27.786	0								0	0	0	1.7419	1	9868	9868		68.787	5.253	1		+		50105	16813	33053	33195	50750	50750					0.08331217482714237
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7865905761719	2	475.78711	949.559667	-0.0031784	-1.5122E-06	-0.15953	-7.5904E-05	-0.16271	-7.7416E-05	475.7869876517606	15.055	0.14288	15.055	14.983	15.126	0					10	6	2	0	0	0	0.34592	1	3198	3198		77.318	36.745	1	207500			50106	11433;7319	33054	33196	50751	50751					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.78680419921875	2	475.78711	949.559667	0.33634	0.00016003	0.10452	4.9731E-05	0.44087	0.00020976	475.7871857330082	15.333	0.42612	15.333	15.283	15.709	0					16	10	2	0	0	0	0.28444	1	3946	3946		87.696	25.589	1	2611300			50107	11433;7319	33054	33196	50752	50752					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	475.7863464355469	2	475.78711	949.559667	-1.5453	-0.00073522	1.5599	0.00074217	0.014614	6.953E-06	475.7877829703977	15.107	0.15644	15.107	15.051	15.208	0					14	7	3	0	0	0	0.58686	1	3377	3377		51.193	12.387	1	178680			50108	11433;7319	33054	33196	50753	50753					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.78692626953125	2	475.78711	949.559667	-0.11934	-5.6778E-05	-0.72772	-0.00034624	-0.84705	-0.00040302	475.78674831858126	15.348	0.11356	15.348	15.242	15.356	0					4	2	2	0	0	0	0.42778	1	4169	4169		67.494	7.3754	1	167430			50109	11433;7319	33054	33196	50754	50754					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	475.7868957519531	2	475.78711	949.559667	0.62429	0.00029703	-0.64656	-0.00030763	-0.022277	-1.0599E-05	475.78684424961665	15.331	0.35644	15.331	15.227	15.584	0					10	7	2	0	0	0	0.28444	1	4181	4181		87.696	20.203	1	2247000			50110	11433;7319	33054	33196	50755	50755					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2889404296875	2	475.78711	949.559667	-0.070506	-3.3546E-05	0.68615	0.00032646	0.61565	0.00029292	475.7874441520005	15.157	0.10772	15.157	15.118	15.226	0					8	4	3	0	0	0	0.41	1	3341	3341		69.628	27.231	1	154590			50111	11433;7319	33054	33196	50756	50756					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.78704833984375	2	475.78711	949.559667	-0.40009	-0.00019036	0.10968	5.2182E-05	-0.29041	-0.00013817	475.7872427694734	15.162	0.16634	15.162	15.112	15.278	0					11	6	3	0	0	0	0.25143	1	3336	3336		98.629	39.847	1	332870			50112	11433;7319	33054	33196	50757	50757					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7868347167969	2	475.78711	949.559667	-0.61668	-0.00029341	0.88235	0.00041981	0.26567	0.0001264	475.78744230776357	15.272	0.30059	15.272	15.212	15.513	0					8	6	2	0	0	0	0.2451	1	3998	3998		110.12	27.369	1	1681600			50113	11433;7319	33054	33196	50758	50758					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7872314453125	2	475.78711	949.559667	0.75638	0.00035988	0.34396	0.00016365	1.1003	0.00052353	475.78721994243386	15.306	0.40113	15.306	15.195	15.596	0					11	8	2	0	0	0	0.25143	1	3996	3996		98.629	26.752	1	2345000			50114	11433;7319	33054	33196	50759	50759					0.08286948311229025
YEKKEQSF	8	Unmodified	_YEKKEQSF_					0	0	0			REV__tr|U7STM7|U7STM7_FUSNUSecretedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01118PE=4SV=1	REV__tr|U7STM7|U7STM7_FUSNUSecretedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01118PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7617797851562	2	529.761289	1057.50803	0.11351	6.0131E-05	-0.4212	-0.00022313	-0.30769	-0.000163	529.7610913676667	41.804	0.17523	41.804	41.75	41.925	0					13	8	2	0	0	0	0.44433	1	15874	15874		65.803	1.5959	1	75500	+		50115	21929	33055	33197	50760	50760					-0.018428401733444844
YEKLADAVRF	10	Unmodified	_YEKLADAVRF_					0	0	0		WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant;ENST00000426414.6_1_4:85730999-85781744:-|nuORF;WDFY3|p.N1207Tfs*16|1|0.37|ENSG00000163625|chr4:84789775-84789775|T/-|frameshift_variant;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.5520935058594	3	404.552151	1210.63462	0.041168	1.6655E-05	-0.17833	-7.2146E-05	-0.13717	-5.5491E-05	404.55209461852826	30.521	0.2484	30.521	30.416	30.664	0					6	5	2	0	0	0	0.65051	1	11433	11433		28.081	0.19925	1	180320			50116	5583;23110	33056	33198	50761	50761					0.03773086051796781
YEKLGSTDL	9	Unmodified	_YEKLGSTDL_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000473243.5_1_19:19762333-19765368:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	513.2608032226562	2	513.261122	1024.50769	1.0971	0.00056308	-1.0077	-0.00051722	0.089347	4.5858E-05	513.2605436296516	31.98	0.171	31.98	31.899	32.07	0					7	4	2	0	0	0	0.11411	1	11707	11707		76.17	8.676	1	308230			50117	2392	33057	33199	50762	50762					-0.003582598931643588
YEKLGSTDL	9	Unmodified	_YEKLGSTDL_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000473243.5_1_19:19762333-19765368:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.2592163085938	2	513.261122	1024.50769	-0.25804	-0.00013244	-1.454	-0.00074627	-1.712	-0.00087871	513.260272512199	31.751	0.1153	31.751	31.708	31.823	0					7	4	2	0	0	0	0.27249	1	10548	10548		52.937	6.9645	1	76749			50118	2392	33057	33199	50763	50763					-0.003582598931643588
YEKLGSTDL	9	Unmodified	_YEKLGSTDL_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000473243.5_1_19:19762333-19765368:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	513.261474609375	2	513.261122	1024.50769	0.52444	0.00026917	-0.0065521	-3.3629E-06	0.51788	0.00026581	513.2612518135675	31.75	0.12314	31.75	31.666	31.789	0					6	3	2	0	0	0	0.33044	1	10964	10964		47.657	5.2612	1	75251			50119	2392	33057	33199	50764	50764					-0.003582598931643588
YEKLLWTT	8	Unmodified	_YEKLLWTT_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2847290039062	2	527.2844	1052.55425	1.6281	0.00085845	-0.39943	-0.00021061	1.2286	0.00064784	527.2842824341437	42.339	0.22898	42.339	42.257	42.486	0					10	6	2	0	0	0	0.53424	1	16884	16884		56.721	12.604	1	160170			50120	6049;6450	33058	33200	50765	50765					0.030072247287534992
YEKNSFPL	8	Unmodified	_YEKNSFPL_					0	0	0			REV__NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant	REV__NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.2543029785156	2	499.2531	996.491647	2.9187	0.0014572	-0.86391	-0.00043131	2.0548	0.0010259	499.2528654428216	29.953	0.36679	29.953	29.764	30.131	0					16	7	4	0	0	0	0.5676	1	11030	11030		53.351	1.0523	1	715450	+		50121	15601	33059	33201	50766	50766					-0.006739213394212129
YEKPAIIW	8	Unmodified	_YEKPAIIW_					0	0	0			REV__ENSG00000263761|ENST00000581492|GDF2	REV__ENSG00000263761|ENST00000581492|GDF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.2834167480469	2	510.28166	1018.54877	3.0441	0.0015533	1.2302	0.00062774	4.2743	0.0021811	510.2821304759239	11.3	0.056383	11.3	11.264	11.321	0					6	3	2	0	0	0	0.7887	1	2174	2174		12.959	0	1	77545	+		50122	17785	33060	33202	50767	50767					0.0402354593693417
YEKPEAPEL	9	Unmodified	_YEKPEAPEL_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	538.2695922851562	2	538.268947	1074.52334	2.0461	0.0011013	-1.1235	-0.00060474	0.92259	0.0004966	538.268094031555	31.977	0.53855	31.977	31.696	32.234	0					26	13	3	0	0	0	0.1424	1	11709	11709		69.628	11.816	1	159860			50123	4294	33061	33203	50768	50768					-0.010939733761460957
YEKQDTLL	8	Unmodified	_YEKQDTLL_					0	0	0		STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.263671875	2	505.263665	1008.51278	-0.071173	-3.5961E-05	-0.073979	-3.7379E-05	-0.14515	-7.334E-05	505.26360451343834	30.456	0.20107	30.456	30.391	30.592	0					14	7	3	0	0	0	0.37144	1	9707	9707		74.255	2.9593	1	117330			50124	3951	33062	33204	50769	50769					0.008860439694331035
YEKQDTLL	8	Unmodified	_YEKQDTLL_					0	0	0		STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.26361083984375	2	505.263665	1008.51278	-0.048647	-2.4579E-05	-0.25119	-0.00012692	-0.29984	-0.0001515	505.26359884266606	30.787	0.3583	30.787	30.641	30.999	0					18	8	3	0	0	0	0.26795	1	11122	11122		93.143	21.848	1	722680			50125	3951	33062	33204	50770	50770					0.008860439694331035
YEKQDTLL	8	Unmodified	_YEKQDTLL_					0	0	0		STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.26373291015625	2	505.263665	1008.51278	-0.41426	-0.00020931	0.39912	0.00020166	-0.015138	-7.6488E-06	505.26399247812293	30.771	0.27059	30.771	30.664	30.935	0					15	6	3	0	0	0	0.27635	1	11524	11524		90.37	19.074	1	474080			50126	3951	33062	33204	50771	50771					0.008860439694331035
YEKQDTLLK	9	Unmodified	_YEKQDTLLK_					0	0	0		STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	379.87640380859375	3	379.876523	1136.60774	0.51459	0.00019548	-0.62468	-0.0002373	-0.11009	-4.1822E-05	379.87626438739613	25.746	0.29809	25.746	25.636	25.934	0					7	4	2	0	0	0	0.3269	1	9188	9188		47.96	5.0953	1	1021700			50127	3951	33063	33205	50772	50772					0.044899774406076176
YEKRMATEV	9	Unmodified	_YEKRMATEV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000497406.2_1_12:59414000-59414099:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	563.7821044921875	2	563.781699	1125.54884	1.2446	0.00070167	-1.5277	-0.00086127	-0.28308	-0.0001596	563.7813560885472	20.632	0.18399	20.632	20.547	20.731	0					9	5	3	0	0	0	0.51991	1	5562	5562		30.318	1.1682	1	127910			50128	4145	33064	33206	50773	50773					-0.008908221253477677
YEKRMATEV	9	Unmodified	_YEKRMATEV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000497406.2_1_12:59414000-59414099:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	563.78271484375	2	563.781699	1125.54884	0.38768	0.00021857	-0.7979	-0.00044984	-0.41022	-0.00023127	563.7827514159827	20.928	0.17727	20.928	20.833	21.01	0					17	4	5	0	0	0	0.037924	1	6579	6579		101.25	39.561	1	946620			50129	4145	33064	33206	50774	50774					-0.008908221253477677
YEKRMATEV	9	Unmodified	_YEKRMATEV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000497406.2_1_12:59414000-59414099:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	563.7816772460938	2	563.781699	1125.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.669	1	20.669	20.169	21.169	0								0	0	0	0.25587	1	5811	5811		42.864	10.909	1				50130	4145	33064	33206	50775	50775					-0.008908221253477677
YEKRMATEV	9	Unmodified	_YEKRMATEV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000497406.2_1_12:59414000-59414099:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7830810546875	2	563.781699	1125.54884	0.12889	7.2666E-05	-0.26323	-0.0001484	-0.13434	-7.5736E-05	563.7828703945964	20.855	0.11513	20.855	20.798	20.913	0					8	2	4	0	0	0	0.095583	1	6836	6836		80.455	36.804	1	798880			50131	4145	33064	33206	50776	50776					-0.008908221253477677
YEKTIAQMI	9	Unmodified	_YEKTIAQMI_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;nc|ENSG00000138162|O95359-2|TACC2;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1	nc|ENSG00000138162|O95359-3|TACC2;nc|ENSG00000147526|O75410-5|TACC1	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.7893676757812	2	548.788992	1095.56343	1.764	0.00096806	-0.059125	-3.2447E-05	1.7049	0.00093561	548.789081708754	40.955	0.34782	40.955	40.737	41.085	0					13	10	2	0	0	0	0.076532	1	16124	16124		85.862	19.433	1	219120			50132	4235;4787	33065	33207	50777	50777					0.019472500227720957
YELEVKRV	8	Unmodified	_YELEVKRV_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.2958374023438	2	518.295299	1034.57605	1.0589	0.00054884	-0.32804	-0.00017002	0.73089	0.00037882	518.2951318583272	28.199	0.21157	28.199	28.096	28.308	0					6	4	2	0	0	0	0.29286	1	10315	10315		84.916	26.134	1	106710			50133	1541	33066	33208	50778	50778					0.060140294773418645
YELVTGRR	8	Unmodified	_YELVTGRR_					0	0	0		ENSG00000196843|ENST00000357485|ARID5A;ARID5A|p.R213Gfs*55|1|0.21|ENSG00000196843|chr2:96551159-96551159|C/-|frameshift_variant;nc|ENSG00000196843|Q03989-5|ARID5A	ENSG00000196843|ENST00000357485|ARID5A	ENSG00000196843|ENST00000357485|ARID5A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2763977050781	2	497.277441	992.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.539	1	23.539	23.039	24.039	0								0	0	0	1.7419	1	7088	7088		24.203	0	1				50134	7398	33067	33209	50779	50779					0.04375992020334252
YEMAVKILEE	10	Unmodified	_YEMAVKILEE_					0	0	0		NAA15|p.A168V|1|0.26|ENSG00000164134|chr4:139342926-139342926|C/T|missense_variant	NAA15|p.A168V|1|0.26|ENSG00000164134|chr4:139342926-139342926|C/T|missense_variant	NAA15|p.A168V|1|0.26|ENSG00000164134|chr4:139342926-139342926|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	408.8779296875	3	408.877535	1223.61078	1.1504	0.00047036	-0.072117	-2.9487E-05	1.0783	0.00044087	408.87745887602523	28.132	2.201	28.132	27.947	30.148	0					82	46	2	0	0	0	0.64162	1	10246	10246		29.17	1.0886	1	1560600			50135	11402	33068	33210	50780	50780					0.007914845031336881
YEMEVSQRL	9	Unmodified	_YEMEVSQRL_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	577.7789306640625	2	577.779156	1153.54376	-0.068493	-3.9574E-05	0.10893	6.2937E-05	0.040436	2.3363E-05	577.7792788297019	35.112	0.16995	35.112	35.022	35.192	0					7	4	2	0	0	0	0.18416	1	13147	13147		63.534	1.8426	1	139850			50136	2200	33069	33211	50781	50781					-0.026871259879726495
YEMEVSQRL	9	Unmodified	_YEMEVSQRL_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	577.7796630859375	2	577.779156	1153.54376	1.7146	0.00099067	-1.2554	-0.00072536	0.45919	0.00026531	577.7785872952359	35.107	0.23006	35.107	35.028	35.258	0					17	6	3	0	0	0	0.21419	1	13574	13574		59.931	18.504	1	509850			50137	2200	33069	33211	50782	50782					-0.026871259879726495
YEMEVSQRL	9	Unmodified	_YEMEVSQRL_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	577.7791137695312	2	577.779156	1153.54376	1.7155	0.00099119	-2.1088	-0.0012184	-0.39329	-0.00022724	577.777862172117	35.034	0.41539	35.034	34.864	35.279	0					15	8	4	0	0	0	0.11411	1	13496	13496		76.17	31.792	1	464410			50138	2200	33069	33211	50783	50783					-0.026871259879726495
YENEKCPTC	9	2 Carbamidomethyl (C)	_YENEKC(Carbamidomethyl (C))PTC(Carbamidomethyl (C))_	YENEKC(1)PTC(1)		YENEKC(41)PTC(41)		0	2	0			REV__nc|ENSG00000168959|P41594-3|GRM5	REV__nc|ENSG00000168959|P41594-3|GRM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.73779296875	2	600.736631	1199.45871	3.1115	0.0018692	-0.13953	-8.3822E-05	2.972	0.0017854	600.7361648619036	49.889	0.29726	49.889	49.751	50.049	0					20	12	2	0	0	0	0.40353	1	19699	19699		41.427	9.8968	1	133270	+		50139	16287	33070	33212	50784	50784	580;581				-0.13304239516082816
YENENVKGL	9	Unmodified	_YENENVKGL_					0	0	0		DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.2642822265625	2	533.264196	1064.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.186	1	27.186	26.686	27.686	0								0	0	0	0.19847	1	9467	9467		51.193	6.1705	1				50140	765	33071	33213	50785	50785					-0.01583741661647764
YENKALML	8	Unmodified	_YENKALML_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.2572937011719	2	491.257328	980.500103	-0.063403	-3.1147E-05	-0.29422	-0.00014454	-0.35763	-0.00017569	491.2572744071672	36.265	0.22807	36.265	36.178	36.406	0					14	6	3	0	0	0	0.65148	1	14099	14099		40.778	7.9657	1	168430			50141	2545	33072	33214	50786	50786					0.00907309305534909
YENLGRAL	8	Unmodified	_YENLGRAL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	468.25054931640625	2	468.250892	934.48723	0.3106	0.00014544	-1.9057	-0.00089233	-1.5951	-0.00074689	468.25030921267535	31.785	0.17479	31.785	31.696	31.871	0					7	4	2	0	0	0	0.62915	1	11621	11621		44.377	7.3487	1	107020			50142	1272	33073	33215	50787	50787					0.017366142376545213
YENLGRAL	8	Unmodified	_YENLGRAL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	468.25103759765625	2	468.250892	934.48723	-1.0828	-0.00050704	0.041919	1.9629E-05	-1.0409	-0.00048741	468.25093052712384	31.562	0.11076	31.562	31.524	31.635	0					6	4	2	0	0	0	0.66095	1	10477	10477		39.253	7.298	1	38540			50143	1272	33073	33215	50788	50788					0.017366142376545213
YENLSDKL	8	Unmodified	_YENLSDKL_					0	0	0			REV__ENST00000463640.1_1_10:94238531-94239198:-|nuORF	REV__ENST00000463640.1_1_10:94238531-94239198:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.2485046386719	2	491.248015	980.481476	-0.14365	-7.0567E-05	0.7635	0.00037507	0.61986	0.0003045	491.2486125795888	27.157	0.12226	27.157	27.096	27.218	0					7	4	2	0	0	0	0.65148	1	8359	8359		40.778	1.5253	1	74413	+		50144	14262	33074	33216	50789	50789					-0.009545290646656213
YENLTNKL	8	Unmodified	_YENLTNKL_					0	0	0		NIN|p.E895Cfs*10|1|0.26|ENSG00000100503|chr14:50758344-50758347|TCTC/-|frameshift_variant;NIN|p.K1233Rfs*3|1|0.45|ENSG00000100503|chr14:50757332-50757332|T/-|frameshift_variant;nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN;NIN|p.N1391Kfs*8|1|0.03|ENSG00000100503|chr14:50756857-50756858|-/AGGAAAACAC|frameshift_variant;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;ENSG00000100503|ENST00000530997|NIN	NIN|p.E895Cfs*10|1|0.26|ENSG00000100503|chr14:50758344-50758347|TCTC/-|frameshift_variant	NIN|p.E895Cfs*10|1|0.26|ENSG00000100503|chr14:50758344-50758347|TCTC/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.7631530761719	2	497.763832	993.513111	-0.72144	-0.00035911	-0.77797	-0.00038724	-1.4994	-0.00074635	497.76380883775744	31.886	0.11844	31.886	31.827	31.945	0					4	2	2	0	0	0	0.57171	1	12078	12078		52.937	8.8199	1	79549			50145	2036	33075	33217	50790	50790					0.01609463689283075
YENPTYKF	8	Unmodified	_YENPTYKF_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;APP|p.Q767R|1|0.1|ENSG00000142192|chr21:25881683-25881683|T/C|missense_variant	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	531.2503662109375	2	531.250557	1060.48656	0.98167	0.00052151	-1.269	-0.00067414	-0.28729	-0.00015262	531.2492032208719	35.539	0.51712	35.539	35.258	35.775	0					18	14	2	0	0	0	0.61938	1	13726	13726		45.952	1.8352	1	46423			50146	4487	33076	33218	50791	50791					-0.041262252020715096
YENTKLLSA	9	Unmodified	_YENTKLLSA_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.7771606445312	2	519.776939	1037.53933	0.22628	0.00011762	0.31205	0.0001622	0.53833	0.00027981	519.7771738242119	29.898	0.19325	29.898	29.831	30.024	0					16	7	3	0	0	0	0.11411	1	9762	9762		76.17	10.704	1	117920			50147	3501	33077	33219	50792	50792					0.022057328607843374
YENTKLLSA	9	Unmodified	_YENTKLLSA_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.777587890625	2	519.776939	1037.53933	0.99526	0.00051731	-0.78512	-0.00040808	0.21015	0.00010923	519.776477005198	29.919	0.14735	29.919	29.839	29.986	0					11	4	3	0	0	0	0.19952	1	10110	10110		61.691	11.667	1	141700			50148	3501	33077	33219	50793	50793					0.022057328607843374
YENTKLLSA	9	Unmodified	_YENTKLLSA_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7771606445312	2	519.776939	1037.53933	-1.362	-0.00070793	1.5414	0.0008012	0.17944	9.327E-05	519.7778223647903	29.917	0.18908	29.917	29.829	30.018	0					8	5	2	0	0	0	0.21263	1	10120	10120		60.118	15.741	1	90258			50149	3501	33077	33219	50794	50794					0.022057328607843374
YENTKLLSA	9	Unmodified	_YENTKLLSA_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7774658203125	2	519.776939	1037.53933	0.3136	0.000163	0.16566	8.6106E-05	0.47926	0.00024911	519.777112169454	30.056	0.21615	30.056	29.947	30.163	0					11	4	3	0	0	0	0.054723	1	11092	11092		93.598	45.638	1	431180			50150	3501	33077	33219	50795	50795					0.022057328607843374
YENTKLLSA	9	Unmodified	_YENTKLLSA_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.7772216796875	2	519.776939	1037.53933	1.6158	0.00083987	-1.6628	-0.0008643	-0.047005	-2.4432E-05	519.7763634951452	30.054	0.3625	30.054	29.98	30.342	0					16	7	4	0	0	0	0.011893	1	11085	11085		136.99	64.11	1	916690			50151	3501	33077	33219	50796	50796					0.022057328607843374
YEPCIVVS	8	Unmodified	_YEPCIVVS_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	455.224853515625	2	455.222954	908.431355	0.016686	7.596E-06	3.9412	0.0017941	3.9579	0.0018017	455.22471616493254	16.126	0.10627	16.126	16.079	16.185	0					6	4	2	0	0	0	0.64096	1	3629	3629		42.474	5.446	1	55126			50152	7072	33078	33220	50797	50797					-0.02652354994165762
YEQAARVAI	9	Unmodified	_YEQAARVAI_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	510.7767333984375	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.425	1	29.425	28.925	29.925	0								0	0	0	0.25587	1	9578	9578		42.864	0.46813	1				50153	4933	33079	33221	50798	50798					0.031005723004682295
YEQILNTKL	9	Unmodified	_YEQILNTKL_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	561.3141479492188	2	561.313689	1120.61282	0.48005	0.00026946	-0.014755	-8.2823E-06	0.46529	0.00026117	561.3137710248507	39.371	0.26483	39.371	39.271	39.535	0					18	9	3	0	0	0	0.052435	1	14979	14979		94.409	16.876	1	240120			50154	6498	33080	33222	50799	50799					0.05734281303239186
YEQILNTKL	9	Unmodified	_YEQILNTKL_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.3140258789062	2	561.313689	1120.61282	-0.0099934	-5.6094E-06	0.35062	0.00019681	0.34063	0.0001912	561.3137107021781	39.323	0.18765	39.323	39.268	39.456	0					9	6	2	0	0	0	0.040209	1	15467	15467		99.013	17.488	1	209060			50155	6498	33080	33222	50800	50800					0.05734281303239186
YEQILNTKL	9	Unmodified	_YEQILNTKL_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	561.31396484375	2	561.313689	1120.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.126	1	39.126	38.626	39.626	0								0	0	0	0.12732	1	13964	13964		65.157	15.133	1				50156	6498	33080	33222	50801	50801					0.05734281303239186
YEQKAAKL	8	Unmodified	_YEQKAAKL_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174253953-174254163:-|nuORF	ENSG00000164104|ENST00000296503|HMGB2	ENSG00000164104|ENST00000296503|HMGB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	475.7685546875	2	475.768917	949.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.152	1	18.152	17.652	18.652	0								0	0	0	1.7419	1	4477	4477		44.117	8.9161	1				50157	5654	33081	33223	50802	50802					0.04650071414505419
YEQKAAKL	8	Unmodified	_YEQKAAKL_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174253953-174254163:-|nuORF	ENSG00000164104|ENST00000296503|HMGB2	ENSG00000164104|ENST00000296503|HMGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.768798828125	2	475.768917	949.523281	0.3352	0.00015948	-0.7191	-0.00034212	-0.38389	-0.00018265	475.76864994926734	18.437	0.2727	18.437	18.339	18.612	0					9	6	2	0	0	0	0.3049	1	5404	5404		82.241	25.519	1	715660			50158	5654	33081	33223	50803	50803					0.04650071414505419
YEQKAAKL	8	Unmodified	_YEQKAAKL_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174253953-174254163:-|nuORF	ENSG00000164104|ENST00000296503|HMGB2	ENSG00000164104|ENST00000296503|HMGB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.7685852050781	2	475.768917	949.523281	-0.61634	-0.00029324	0.30429	0.00014477	-0.31205	-0.00014846	475.7689316238904	18.379	0.21707	18.379	18.321	18.538	0					7	4	2	0	0	0	0.37144	1	5501	5501		74.255	5.4682	1	387670			50159	5654	33081	33223	50804	50804					0.04650071414505419
YEQKIERL	8	Unmodified	_YEQKIERL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	539.7986450195312	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.418	1	24.418	23.918	24.918	0								0	0	0	1.7419	1	8420	8420		30.318	4.7437	1				50160	1272	33082	33224	50805	50805					0.0461712798901317
YEQNKLSL	8	Unmodified	_YEQNKLSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	497.763671875	2	497.763832	993.513111	1.0127	0.00050409	0.11675	5.8113E-05	1.1294	0.0005622	497.76348306973534	43.138	0.3748	43.138	42.896	43.27	0					20	11	3	0	0	0	0.25143	1	17255	17255		98.629	9.6005	1	190600			50161	4489	33083	33225	50806	50806					0.01609463689283075
YEQVAKAL	8	Unmodified	_YEQVAKAL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	461.25579833984375	2	461.255643	920.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.776	1	27.776	27.276	28.276	0								0	0	0	1.7419	1	9131	9131		54.776	8.8244	1				50162	7796	33085	33226	50807	50807					0.033303825231769224
YEQVIKKV	8	Unmodified	_YEQVIKKV_					0	0	0			REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	503.8005676269531	2	503.800217	1005.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.103	1	27.103	26.603	27.603	0								0	0	0	1.7419	1	8823	8823		47.916	7.343	1		+		50163	15826	33086	33227	50808	50808					0.08331217482714237
YERAIKENL	9	Unmodified	_YERAIKENL_					0	0	0		tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.8108520507812	2	568.308938	1134.60332	3.4643	0.0019688	-3.3519	-0.0019049	0.11239	6.3871E-05	568.8083590430874	44.842	0.15762	44.842	44.757	44.915	0					12	6	3	0	0	0	0.17854	1	17964	17964		64.207	5.4253	1	68952			50164	22564	33087	33228	50809	50809					0.04140513017682679
YERDHAVVV	9	Unmodified	_YERDHAVVV_					0	0	0		ENSG00000105202|ENST00000221801|FBL;FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000188573|ENST00000338333|FBLL1	ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2813110351562	2	544.28018	1086.54581	1.8047	0.00098225	-0.43957	-0.00023925	1.3651	0.00074301	544.2801865793673	22.563	0.1673	22.563	22.501	22.668	0					8	5	2	0	0	0	0.34452	1	6407	6407		39.253	16.21	1	104360			50165	2336;7257	33088	33229	50810	50810					0.005996708121301708
YERDHAVVV	9	Unmodified	_YERDHAVVV_					0	0	0		ENSG00000105202|ENST00000221801|FBL;FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000188573|ENST00000338333|FBLL1	ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2808227539062	2	544.28018	1086.54581	1.8742	0.0010201	-0.98733	-0.00053739	0.88685	0.0004827	544.2796461728203	22.893	0.30158	22.893	22.805	23.107	0					14	7	3	0	0	0	0.28504	1	7513	7513		44.377	12.847	1	916540			50166	2336;7257	33088	33229	50811	50811					0.005996708121301708
YERSLGGQ	8	Unmodified	_YERSLGGQ_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.2246398925781	2	455.224874	908.435195	0.12234	5.5692E-05	-0.97037	-0.00044174	-0.84803	-0.00038604	455.22455537847355	16.158	0.11684	16.158	16.124	16.241	0					5	3	2	0	0	0	0.67394	1	3784	3784		37.159	1.5408	1	100500			50167	4633	33089	33230	50812	50812					-0.02268549176073975
YERSLGGQ	8	Unmodified	_YERSLGGQ_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	455.22442626953125	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.386	1	16.386	15.886	16.886	0								0	0	0	1.7419	1	4526	4526		68.787	7.8149	1				50168	4633	33089	33230	50813	50813					-0.02268549176073975
YERSNEYQL	9	Unmodified	_YERSNEYQL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	601.27734375	2	601.277835	1200.54112	0.14287	8.5902E-05	0.12786	7.6882E-05	0.27073	0.00016278	601.2778526248484	29.398	0.27818	29.398	29.309	29.588	0					22	9	3	0	0	0	0.34452	1	9250	9250		46.457	10.838	1	354690			50169	1768	33090	33231	50814	50814					-0.0511325812128689
YERSNEYQL	9	Unmodified	_YERSNEYQL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	601.2779541015625	2	601.277835	1200.54112	-0.22137	-0.0001331	0.09397	5.6502E-05	-0.1274	-7.66E-05	601.2780221691033	29.645	0.6548	29.645	29.512	30.167	0					44	16	5	0	0	0	0.026848	1	10599	10599		112.11	26.946	1	1944100			50170	1768	33090	33231	50815	50815					-0.0511325812128689
YERSNEYQL	9	Unmodified	_YERSNEYQL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|P63092-4|GNAS;ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	601.2783813476562	2	601.277835	1200.54112	0.46528	0.00027976	-0.0010791	-6.4884E-07	0.4642	0.00027911	601.2778181855615	29.464	0.21065	29.464	29.337	29.548	0					9	5	3	0	0	0	0.11898	1	9902	9902		75.043	27.128	1	214580			50171	1768	33090	33231	50816	50816					-0.0511325812128689
YERVDGSVR	9	Unmodified	_YERVDGSVR_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.775390625	2	540.775262	1079.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.68	1	30.68	30.18	31.18	0								0	0	0	0.0124	1	11088	11088		107.01	5.5477	1				50172	3740	33091	33232	50817	50817					-0.000615171932395242
YERVDGSVR	9	Unmodified	_YERVDGSVR_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7757568359375	2	540.775262	1079.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.707	1	30.707	30.207	31.207	0								0	0	0	0.018912	1	11506	11506		101.25	1.8777	1				50173	3740	33091	33232	50818	50818					-0.000615171932395242
YESAKVLNV	9	Unmodified	_YESAKVLNV_					0	0	0		ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.7793273925781	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.489	1	32.489	31.989	32.989	0								0	0	0	0.22284	1	11932	11932		47.657	11.211	1				50174	3627	33092	33233	50819	50819					0.034500367233818
YESAKVLNV	9	Unmodified	_YESAKVLNV_					0	0	0		ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.77874755859375	2	511.779482	1021.54441	0.44973	0.00023016	-1.2279	-0.00062843	-0.7782	-0.00039827	511.7787707685998	32.468	0.21136	32.468	32.331	32.542	0					8	5	2	0	0	0	0.27123	1	12332	12332		53.089	21.559	1	120080			50175	3627	33092	33233	50820	50820					0.034500367233818
YESAKVLNV	9	Unmodified	_YESAKVLNV_					0	0	0		ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7795715332031	2	511.779482	1021.54441	0.038946	1.9932E-05	-0.81612	-0.00041767	-0.77717	-0.00039774	511.778658866806	32.452	1.0723	32.452	31.768	32.84	0					13	9	3	0	0	0	0.19952	1	12237	12237		61.691	29.736	1	308110			50176	3627	33092	33233	50821	50821					0.034500367233818
YESEKVGVA	9	Unmodified	_YESEKVGVA_					0	0	0		ENST00000490458.1_1_22:21213398-21224822:+|nuORF;ENSG00000099940|ENST00000215730|SNAP29	ENST00000490458.1_1_22:21213398-21224822:+|nuORF	ENST00000490458.1_1_22:21213398-21224822:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2480773925781	2	491.248015	980.481476	0.46464	0.00022825	-0.62459	-0.00030683	-0.15995	-7.8574E-05	491.2476720051429	23.308	0.10686	23.308	23.234	23.34	0					4	2	2	0	0	0	0.27249	1	7699	7699		52.937	10.462	1	38582			50177	1950	33093	33234	50822	50822					-0.009545290646542526
YESKVFYL	8	Unmodified	_YESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7721557617188	2	524.771126	1047.5277	2.0428	0.001072	0.1133	5.9455E-05	2.1561	0.0011315	524.7711690923924	43.43	0.16446	43.43	43.359	43.523	0					13	9	2	0	0	0	0.5535	1	16381	16381		54.776	29.326	1	57911			50178	3531	33094	33235	50823	50823					0.005835358374270072
YESKVFYL	8	Unmodified	_YESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.77197265625	2	524.771126	1047.5277	1.0024	0.00052603	0.96737	0.00050765	1.9698	0.0010337	524.7716591470198	43.393	0.25825	43.393	43.285	43.543	0					22	14	2	0	0	0	0.51384	1	16961	16961		58.782	0.97068	1	96679			50179	3531	33094	33235	50824	50824					0.005835358374270072
YESKVFYL	8	Unmodified	_YESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	524.7724609375	2	524.771126	1047.5277	0.54173	0.00028429	2.4311	0.0012758	2.9728	0.00156	524.7724956528097	43.341	0.33236	43.341	43.247	43.579	0					24	12	3	0	0	0	0.59773	1	17317	17317		49.442	20.271	1	203830			50180	3531	33094	33235	50825	50825					0.005835358374270072
YESVGKLIL	9	Unmodified	_YESVGKLIL_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.80242919921875	2	511.30005	1020.58555	0.4128	0.00021106	1.5215	0.00077792	1.9343	0.00098898	511.30072170905294	43.476	0.215	43.476	43.351	43.566	0					23	11	3	0	0	0	0.37197	1	16975	16975		44.117	0	1	138830	+		50181	12522	33095	33236	50826	50826					0.07607797762875634
YETEGIRGL	9	Unmodified	_YETEGIRGL_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	519.2695922851562	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.349	1	34.349	33.849	34.849	0								0	0	0	0.12601	1	11580	11580		65.465	26.659	1				50182	1553	33096	33237	50827	50827					0.0021256220097711775
YETEGIRGL	9	Unmodified	_YETEGIRGL_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.26708984375	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.599	1	34.599	34.099	35.099	0								0	0	0	0.080575	1	13349	13349		77.318	11.514	1				50183	1553	33096	33237	50828	50828					0.0021256220097711775
YETEGIRGL	9	Unmodified	_YETEGIRGL_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.26708984375	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.341	1	34.341	33.841	34.841	0								0	0	0	0.11736	1	12147	12147		67.494	5.3863	1				50184	1553	33096	33237	50829	50829					0.0021256220097711775
YETEGIRGL	9	Unmodified	_YETEGIRGL_					0	0	0		MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENSG00000076003|ENST00000264156|MCM6;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2671508789062	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.535	1	34.535	34.035	35.035	0								0	0	0	0.024201	1	13246	13246		98.629	54.513	1				50185	1553	33096	33237	50830	50830					0.0021256220097711775
YETKITKI	8	Unmodified	_YETKITKI_					0	0	0		ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	498.2914733886719	2	498.292225	994.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.783	1	24.783	24.283	25.283	0								0	0	0	1.7419	1	7367	7367		36.447	2.2742	1				50186	235	33097	33238	50831	50831					0.07239511245791164
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.7629089355469	2	469.7633	937.512048	0.20145	9.4635E-05	-0.89682	-0.00042129	-0.69537	-0.00032666	469.7629422262492	31.941	0.28884	31.941	31.822	32.111	0					19	7	3	0	0	0	0.53424	1	11670	11670		56.721	3.3696	1	636550			50187	1989	33098	33239	50832	50832					0.0407924932038668
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	469.76318359375	2	469.7633	937.512048	-1.2225	-0.00057431	0.092574	4.3488E-05	-1.13	-0.00053082	469.76345855713276	31.711	0.18568	31.711	31.611	31.796	0					13	7	2	0	0	0	0.58597	1	10517	10517		51.335	3.4199	1	91654			50188	1989	33098	33239	50833	50833					0.0407924932038668
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.7630615234375	2	469.7633	937.512048	0.61661	0.00028966	-2.201	-0.001034	-1.5844	-0.00074429	469.7621612767714	31.903	0.34439	31.903	31.75	32.095	0					12	7	2	0	0	0	0.53424	1	12089	12089		56.721	1.2168	1	362340			50189	1989	33098	33239	50834	50834					0.0407924932038668
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7633361816406	2	469.7633	937.512048	-0.22259	-0.00010456	0.82839	0.00038915	0.6058	0.00028458	469.7637398214928	31.7	0.16647	31.7	31.604	31.771	0					7	4	2	0	0	0	0.68432	1	10949	10949		35.618	0	1	60965			50190	1989	33098	33239	50835	50835					0.0407924932038668
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.7630615234375	2	469.7633	937.512048	-0.64524	-0.00030311	-0.21589	-0.00010142	-0.86113	-0.00040453	469.76339927392434	31.687	0.19579	31.687	31.593	31.789	0					9	5	2	0	0	0	0.58597	1	10927	10927		51.335	10.763	1	96687			50191	1989	33098	33239	50836	50836					0.0407924932038668
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.76324462890625	2	469.7633	937.512048	-0.53178	-0.00024981	0.13438	6.3126E-05	-0.3974	-0.00018668	469.76339018476375	31.877	0.31686	31.877	31.768	32.085	0					15	6	4	0	0	0	0.25873	1	11952	11952		96.19	32.884	1	536180			50192	1989	33098	33239	50837	50837					0.0407924932038668
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.7625732421875	2	469.7633	937.512048	0.53124	0.00024956	-1.7106	-0.00080356	-1.1793	-0.000554	469.7623871805205	31.861	0.36726	31.861	31.701	32.068	0					13	7	2	0	0	0	0.39125	1	11966	11966		71.877	9.7701	1	997900			50193	1989	33098	33239	50838	50838					0.0407924932038668
YETPTGIKV	9	Unmodified	_YETPTGIKV_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.274169921875	2	504.274032	1006.53351	-0.056581	-2.8532E-05	0.54733	0.000276	0.49075	0.00024747	504.27421240260026	34.57	0.45	34.57	34.361	34.811	0					27	11	4	0	0	0	0.16002	1	12861	12861		66.429	3.123	1	905140			50194	6206	33099	33240	50839	50839					0.030506343490856125
YETQVKVM	8	Unmodified	_YETQVKVM_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	499.25457763671875	2	499.254785	996.495018	-0.051586	-2.5754E-05	-0.41426	-0.00020682	-0.46585	-0.00023258	499.2544189374227	29.737	0.20764	29.737	29.66	29.868	0					13	9	2	0	0	0	0.32597	1	9407	9407		79.713	26.361	1	79579			50195	3204	33100	33241	50840	50840					-0.003369945570625532
YETQVKVM	8	Unmodified	_YETQVKVM_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	499.25445556640625	2	499.254785	996.495018	-0.21003	-0.00010486	-0.25466	-0.00012714	-0.4647	-0.000232	499.25474644739177	30.008	0.36099	30.008	29.884	30.245	0					18	9	3	0	0	0	0.24681	1	10764	10764		107.01	40.578	1	568850			50196	3204	33100	33241	50841	50841					-0.003369945570625532
YETQVKVM	8	Unmodified	_YETQVKVM_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.2546081542969	2	499.254785	996.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.789	1	29.789	29.289	30.289	0								0	0	0	1.7419	1	9729	9729		66.429	22.312	1				50197	3204	33100	33241	50842	50842					-0.003369945570625532
YETQVKVM	8	Unmodified	_YETQVKVM_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.2549133300781	2	499.254785	996.495018	0.86118	0.00042995	-1.9365	-0.0009668	-1.0753	-0.00053685	499.2542173588019	30	0.51667	30	29.801	30.317	0					21	11	4	0	0	0	0.29286	1	11179	11179		84.916	5.4645	1	864790			50198	3204	33100	33241	50843	50843					-0.003369945570625532
YETRVPPGY	9	Unmodified	_YETRVPPGY_					0	0	0			REV__SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	REV__SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.773193359375	2	541.269281	1080.52401	2.0131	0.0010896	-0.9812	-0.00053109	1.0319	0.00055855	541.2681732764938	27.118	0.80714	27.118	27.008	27.815	0					52	16	5	0	0	0	0.15163	1	9938	9938		34.173	0	1	4005400	+		50199	14380	33101	33242	50844	50844					-0.01303133936426093
YETSKMKVL	9	Unmodified	_YETSKMKVL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.7974243164062	2	549.796817	1097.57908	1.8379	0.0010104	-1.3964	-0.00076772	0.44149	0.00024273	549.795878923685	27.089	0.16954	27.089	27.01	27.18	0					7	4	2	0	0	0	0.095583	1	9418	9418		80.455	29.119	1	239180			50200	2166	33102	33243	50845	50845					0.034195365398318245
YETSKMKVL	9	Unmodified	_YETSKMKVL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	549.7975463867188	2	549.796817	1097.57908	0.48947	0.00026911	0.82179	0.00045182	1.3113	0.00072093	549.797352839959	27.08	0.2086	27.08	26.978	27.186	0					7	4	2	0	0	0	0.16806	1	9781	9781		65.465	22.601	1	181020			50201	2166	33102	33243	50846	50846					0.034195365398318245
YETSKMKVL	9	Unmodified	_YETSKMKVL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.7976684570312	2	549.796817	1097.57908	0.55813	0.00030686	0.41786	0.00022974	0.97599	0.0005366	549.7970309759414	27.062	0.21839	27.062	26.952	27.17	0					7	4	2	0	0	0	0.14578	1	9627	9627		68.846	31.035	1	393740			50202	2166	33102	33243	50847	50847					0.034195365398318245
YEVGIEELQ	9	Unmodified	_YEVGIEELQ_					0	0	0		ENSG00000187889|ENST00000343433|FYB2	ENSG00000187889|ENST00000343433|FYB2	ENSG00000187889|ENST00000343433|FYB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	540.2687377929688	2	540.266404	1078.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.627	1	34.627	34.127	35.127	0								0	0	0	0.2591	1	11330	11330		42.396	0	1				50203	7224	33103	33244	50848	50848					-0.017862772387616133
YEVGQRHGL	9	Unmodified	_YEVGQRHGL_					0	0	0		VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1;ENST00000461328.1_1_6:31750434-31752201:-|nuORF	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	529.7735595703125	2	529.772522	1057.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.275	1	22.275	21.775	22.775	0								0	0	0	0.19749	1	6272	6272		51.335	5.3835	1				50204	7698	33104	33245	50849	50849					0.004028040149478329
YEVKSENL	8	Unmodified	_YEVKSENL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	491.2480163574219	2	491.248015	980.481476	0.80857	0.00039721	-1.4318	-0.00070335	-0.6232	-0.00030615	491.2474239718934	27.413	0.26208	27.413	27.293	27.556	0					19	6	4	0	0	0	0.25987	1	9568	9568		95.815	27.028	1	576120			50205	3782	33105	33246	50850	50850					-0.009545290646656213
YEVKSENL	8	Unmodified	_YEVKSENL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.2481689453125	2	491.248015	980.481476	3.4758	0.0017075	-2.3546	-0.0011567	1.1212	0.00055081	491.24655009955296	27.174	0.10623	27.174	27.108	27.214	0					7	3	3	0	0	0	0.37144	1	8639	8639		74.255	15.473	1	105830			50206	3782	33105	33246	50851	50851					-0.009545290646656213
YEVKSENL	8	Unmodified	_YEVKSENL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	491.24755859375	2	491.248015	980.481476	-0.063773	-3.1328E-05	-0.31045	-0.00015251	-0.37423	-0.00018384	491.247661844662	27.43	0.26436	27.43	27.321	27.586	0					13	5	3	0	0	0	0.2498	1	9924	9924		101.6	40.629	1	650200			50207	3782	33105	33246	50852	50852					-0.009545290646656213
YEVKSENL	8	Unmodified	_YEVKSENL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	491.24847412109375	2	491.248015	980.481476	0.55539	0.00027284	-0.73576	-0.00036144	-0.18037	-8.8605E-05	491.247727973503	27.227	0.1841	27.227	27.177	27.361	0					6	4	2	0	0	0	0.58597	1	8889	8889		51.335	1.8939	1	89977			50208	3782	33105	33246	50853	50853					-0.009545290646656213
YEVKSENL	8	Unmodified	_YEVKSENL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	491.2474365234375	2	491.248015	980.481476	-0.56326	-0.0002767	-0.14228	-6.9893E-05	-0.70554	-0.00034659	491.2479243028747	27.365	0.22045	27.365	27.255	27.476	0					12	4	3	0	0	0	0.27635	1	9775	9775		90.37	23.941	1	1028200			50209	3782	33105	33246	50854	50854					-0.009545290646656213
YEVLSDEV	8	Unmodified	_YEVLSDEV_					0	0	0		nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	nc|ENSG00000103423|Q96EY1-2|DNAJA3	nc|ENSG00000103423|Q96EY1-2|DNAJA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	477.22711181640625	2	477.226748	952.438943	-0.11775	-5.6194E-05	0.95029	0.0004535	0.83254	0.00039731	477.2271236888286	22.128	0.41117	22.128	21.874	22.285	0					11	8	2	0	0	0	0.65276	1	7435	7435		40.573	0	1	175000			50210	2238	33106	33247	50855	50855					-0.03917924192887767
YEVLVDHPL	9	Unmodified	_YEVLVDHPL_					0	0	0			REV__ENSG00000007001|ENST00000005756|UPP2	REV__ENSG00000007001|ENST00000005756|UPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.7888793945312	2	542.787307	1083.56006	0.62156	0.00033737	2.1014	0.0011406	2.7229	0.001478	542.7886764419824	35.745	0.16394	35.745	35.637	35.801	0					5	3	2	0	0	0	0.44593	1	13840	13840		30.504	0	1	72836	+		50211	12864	33107	33248	50856	50856					0.02162323240418118
YEVNLTKGA	9	Unmodified	_YEVNLTKGA_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.76385498046875	2	497.763832	993.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.61	1	31.61	31.11	32.11	0								0	0	0	0.30504	1	11936	11936		34.173	1.3601	1		+		50212	22008	33108	33249	50857	50857					0.016094636892717062
YEVQATSL	8	Unmodified	_YEVQATSL_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	455.7298889160156	2	455.729458	909.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.377	1	27.377	26.877	27.877	0								0	0	0	1.7419	1	8948	8948		31.53	3.6476	1		+		50213	13047	33109	33250	50858	50858					-0.013982006104129141
YEVQSEAKL	9	Unmodified	_YEVQSEAKL_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	533.7745361328125	2	533.774396	1065.53424	0.14622	7.805E-05	1.3137	0.0007012	1.4599	0.00077925	533.7748090338928	29.848	0.25119	29.848	29.682	29.933	0					9	6	2	0	0	0	0.16806	1	10712	10712		65.465	1.2581	1	190610			50214	1956	33110	33251	50859	50859					0.004094289981367183
YEVTSKVDL	9	Unmodified	_YEVTSKVDL_					0	0	0		COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant;COL21A1|p.E790Dfs*24|1|0.04|ENSG00000124749|chr6:56060778-56060779|-/AGAGGATATAAGTGAGGTGAAGAAGAAAACAGATAACA|frameshift_variant;COL21A1|p.G902Mfs*52|1|0.44|ENSG00000124749|chr6:56057828-56057829|-/GGAGGGCCCTCTGGACCTAAGATGGGACATT|frameshift_variant;nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1	COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	351.8538513183594	3	351.853607	1052.53899	-0.048171	-1.6949E-05	1.6693	0.00058736	1.6212	0.00057041	351.854083878416	18.891	0.25256	18.891	18.811	19.063	0					8	5	3	0	0	0	0.35021	1	5739	5739		45.972	0	1	235110			50215	602	33111	33252	50860	50860					0.014823131409002599
YEVVELLR	8	Unmodified	_YEVVELLR_					0	0	0		nc|ENSG00000082126|Q96JB8-3|MPP4;ENST00000486212.6_1_2:202531091-202563346:-|nuORF;ENST00000483841.2_1_2:202545559-202558746:-|nuORF;MPP4|p.N559Mfs*12|1|0.06|ENSG00000082126|chr2:201647734-201647734|T/-|frameshift_variant;nc|ENSG00000082126|Q96JB8-2|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;ENSG00000082126|ENST00000409474|MPP4	nc|ENSG00000082126|Q96JB8-3|MPP4	nc|ENSG00000082126|Q96JB8-3|MPP4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	511.291015625	2	510.78985	1019.56515	-0.11953	-6.1054E-05	0.15098	7.7121E-05	0.031456	1.6067E-05	510.79008826748725	39.854	0.16948	39.854	39.748	39.917	0					14	10	2	0	0	0	0.5535	1	12910	12910		53.351	12.573	1	75220			50216	1671	33112	33253	50861	50861					0.05614627103057046
YEVYKQEQE	9	Unmodified	_YEVYKQEQE_					0	0	0		nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	608.2822875976562	2	608.280043	1214.54553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.143	1	29.143	28.643	29.643	0								0	0	0	0.36609	1	9168	9168		20.947	0	1				50217	1314	33113	33254	50862	50862					-0.05315793698378002
YFAERVTSL	9	Unmodified	_YFAERVTSL_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	543.2845458984375	2	543.284931	1084.55531	1.1512	0.00062541	-1.0136	-0.00055068	0.13756	7.4736E-05	543.2838269991031	38.118	0.13904	38.118	38.061	38.2	0					13	8	2	0	0	0	0.24334	1	12441	12441		56.434	3.0823	1	101270			50218	7783	33114	33255	50863	50863					0.016414390976706272
YFAERVTSL	9	Unmodified	_YFAERVTSL_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.2853393554688	2	543.284931	1084.55531	0.33546	0.00018225	-0.38961	-0.00021167	-0.054157	-2.9423E-05	543.2848209559326	38.427	0.26119	38.427	38.349	38.61	0					21	8	4	0	0	0	0.10506	1	14589	14589		78.264	28.728	1	834540			50219	7783	33114	33255	50864	50864					0.016414390976706272
YFAERVTSL	9	Unmodified	_YFAERVTSL_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2849731445312	2	543.284931	1084.55531	0.32128	0.00017455	1.5219	0.00082683	1.8432	0.0010014	543.2854535165237	38.208	0.15893	38.208	38.15	38.309	0					12	8	2	0	0	0	0.21263	1	12889	12889		60.118	19.34	1	171050			50220	7783	33114	33255	50865	50865					0.016414390976706272
YFAERVTSL	9	Unmodified	_YFAERVTSL_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.2849731445312	2	543.284931	1084.55531	2.0161	0.0010953	-1.0165	-0.00055225	0.99957	0.00054305	543.2843065247275	38.39	0.40648	38.39	38.277	38.683	0					37	14	4	0	0	0	0.022525	1	15045	15045		117.81	53.604	1	1381600			50221	7783	33114	33255	50866	50866					0.016414390976706272
YFAERVTSL	9	Unmodified	_YFAERVTSL_					0	0	0		ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	ENSG00000213145|ENST00000392531|CRIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.2852172851562	2	543.284931	1084.55531	2.008	0.0010909	-0.26181	-0.00014223	1.7462	0.00094871	543.284365996465	38.357	0.43266	38.357	38.111	38.543	0					17	9	3	0	0	0	0.017421	1	15064	15064		126.24	54.365	1	701400			50222	7783	33114	33255	50867	50867					0.016414390976706272
YFAGEKLGTVV	11	Unmodified	_YFAGEKLGTVV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	592.319091796875	2	592.321514	1182.62847	-0.047034	-2.7859E-05	-3.378	-0.0020008	-3.425	-0.0020287	592.3195071994162	29.045	0.20233	29.045	28.944	29.146	0					8	4	3	0	0	0	0.74306	1	10724	10724		23.523	0	1	150680	+		50223	15602;22247	33115	33256	50868	50868					0.04446567820264136
YFARDCHH	8	Unmodified	_YFARDCHH_					0	0	0		ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	ENSG00000101347|ENST00000646673|SAMHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	524.7247314453125	2	524.724518	1047.43448	2.0435	0.0010723	-1.7933	-0.00094099	0.25021	0.00013129	524.7235865255868	32.428	0.70611	32.428	31.949	32.656	0					29	17	2	0	0	0	0.75243	1	11792	11792		26.796	5.0938	1	93060			50224	2111	33116	33257	50869	50869					-0.08733667096794306
YFDFEEILAF	10	Unmodified	_YFDFEEILAF_					0	0	0		ENSG00000119403|ENST00000373896|PHF19;ENST00000487555.5_1_9:123623373-123629236:-|nuORF	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	431.87420654296875	3	431.872778	1292.59651	3.2567	0.0014065	0.070336	3.0376E-05	3.3271	0.0014369	431.8728242873645	24.285	0.17206	24.285	24.223	24.395	0					6	5	2	0	0	0	0.63224	1	7426	7426		30.318	9.3708	1	69239			50225	3112	33117	33258	50870	50870					-0.038088446535084586
YFDLNYVI	8	Unmodified	_YFDLNYVI_					0	0	0			REV__tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1	REV__tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.763671875	2	523.7633	1045.51205	-1.2776	-0.00066917	2.3668	0.0012396	1.0892	0.00057046	523.764317827336	29.76	0.19492	29.76	29.644	29.839	0					9	5	2	0	0	0	0.66372	1	10078	10078		38.806	1.647	1	75890	+		50226	21668	33118	33259	50871	50871					-0.008887506796327216
YFEVLLME	8	Unmodified	_YFEVLLME_					0	0	0			REV__nc|ENSG00000008382|Q8N594|MPND	REV__nc|ENSG00000008382|Q8N594|MPND	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	522.260986328125	2	522.259536	1042.50452	1.0611	0.00055415	3.5336	0.0018455	4.5947	0.0023996	522.2612014603195	32.938	0.1874	32.938	32.849	33.036	0					6	4	2	0	0	0	0.59411	1	12573	12573		50.025	5.4935	1	50935	+		50227	20920	33119	33260	50872	50872					-0.015032262715521938
YFFLGNLAF	9	Unmodified	_YFFLGNLAF_					0	0	0		OR4N2|p.L59V|1|0.34|ENSG00000176294|chr14:19827623-19827623|C/G|missense_variant;ENSG00000176294|ENST00000557677|OR4N2	OR4N2|p.L59V|1|0.34|ENSG00000176294|chr14:19827623-19827623|C/G|missense_variant	OR4N2|p.L59V|1|0.34|ENSG00000176294|chr14:19827623-19827623|C/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.281005859375	2	546.28166	1090.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.209	1	42.209	41.709	42.709	0								0	0	0	0.22106	1	16574	16574		47.916	0.25827	1				50228	6602	33120	33261	50873	50873					0.00711545936951552
YFGLVYRI	8	Unmodified	_YFGLVYRI_					0	0	0		ENST00000476331.5_1_3:12776275-12782752:-|nuORF;nc|ENSG00000088726|Q8WWA1-3|TMEM40;nc|ENSG00000088726|Q8WWA1-2|TMEM40;ENSG00000088726|ENST00000314124|TMEM40	ENST00000476331.5_1_3:12776275-12782752:-|nuORF	ENST00000476331.5_1_3:12776275-12782752:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.78759765625	2	515.789653	1029.56475	0.81738	0.0004216	-4.1468	-0.0021389	-3.3295	-0.0017173	515.7872474069798	23.771	0.36703	23.771	23.612	23.979	0					9	7	2	0	0	0	0.74117	1	8248	8248		28.254	9.9299	1	102800			50229	1781	33121	33262	50874	50874					0.051152521738458745
YFGNLTKVT	9	Unmodified	_YFGNLTKVT_					0	0	0			REV__ENSG00000155265|ENST00000370602|GOLGA7B	REV__ENSG00000155265|ENST00000370602|GOLGA7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.7821044921875	2	521.782025	1041.5495	-0.12336	-6.4365E-05	0.34635	0.00018072	0.223	0.00011636	521.7821674396656	33.169	0.78776	33.169	32.817	33.605	0					14	8	2	0	0	0	0.36135	1	12681	12681		23.523	0	1	1802700	+		50230	15593	33122	33263	50875	50875					0.030383405859765844
YFILILKGY	9	Unmodified	_YFILILKGY_					0	0	0		nc|ENSG00000132204|Q9BZP3-3|LINC00470	nc|ENSG00000132204|Q9BZP3-3|LINC00470	nc|ENSG00000132204|Q9BZP3-3|LINC00470	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	565.3339233398438	2	565.336436	1128.65832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.847	1	44.847	44.347	45.347	0								0	0	0	0.34907	1	17966	17966		25.45	3.4903	1				50231	11527	33123	33264	50876	50876					0.09913551556292077
YFKIINDPA	9	Unmodified	_YFKIINDPA_					0	0	0			REV__nc|ENSG00000116580|Q3T8J9-3|GON4L;REV__nc|ENSG00000163374|Q9H869-5|YY1AP1	REV__nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	540.7919921875	2	540.78985	1079.56515	1.9956	0.0010792	0.7017	0.00037947	2.6973	0.0014587	540.7903717909924	37.734	0.31691	37.734	37.62	37.937	0					21	10	3	0	0	0	0.19952	1	14763	14763		54.776	0	1	393430	+		50232	14148;15877	33124	33265	50877	50877					0.028546271030336356
YFLDNDKYI	9	Unmodified	_YFLDNDKYI_					0	0	0		tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.7919311523438	2	595.790047	1189.56554	3.1684	0.0018877	-0.46739	-0.00027846	2.701	0.0016092	595.7898381206035	37.262	0.84605	37.262	37.04	37.886	0					38	17	4	0	0	0	0.35021	1	14508	14508		45.972	3.108	1	1495000			50233	22838	33125	33266	50878	50878					-0.021659979677679075
YFLFFFFF	8	Unmodified	_YFLFFFFF_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|97|1|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|97|1|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|97|1|anti-sense	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.2921752929688	2	589.291497	1176.56844	1.3305	0.00078406	0.32706	0.00019273	1.6576	0.0009768	589.2911650409812	40.478	0.46133	40.478	40.257	40.718	0					15	10	3	0	0	0	0.68754	1	16050	16050		24.504	0	1	78871			50234	11306	33126	33267	50879	50879					-0.01278078052314413
YFLILFSIHL	10	Unmodified	_YFLILFSIHL_					0	0	0		ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant;nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000522406.5_1_17:67144970-67178294:-|nuORF	ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant	ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	633.36865234375	2	633.368267	1264.72198	1.011	0.00064032	0.78411	0.00049663	1.7951	0.001137	633.3684720814446	54.343	0.49794	54.343	53.98	54.477	0					67	31	3	0	0	0	0.69166	1	17229	17229		23.042	6.5693	1	112610			50235	3	33127	33268	50880	50880					0.10020911993365189
YFLKVRSESKL	11	Unmodified	_YFLKVRSESKL_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	457.2649841308594	3	457.266122	1368.77654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.519	1	47.519	47.019	48.019	0								0	0	0	0.45674	1	15898	15898		23.378	6.6605	1		+		50236	13392	33128	33269	50881	50881					0.10689879074129749
YFLVVVML	8	Unmodified	_YFLVVVML_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.28485107421875	2	492.285357	982.556161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.095	1	52.095	51.595	52.595	0								0	0	0	1.7419	1	18531	18531		5.0869	0	1		+		50237	17095	33129	33270	50882	50882					0.06418562213013956
YFLYLPVA	8	Unmodified	_YFLYLPVA_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	493.271484375	2	493.273304	984.532055	-1.2674	-0.00062517	-3.3056	-0.0016306	-4.573	-0.0022557	493.2719149443655	38.537	0.19079	38.537	38.455	38.646	0					15	10	2	0	0	0	0.70073	1	12987	12987		33.493	8.989	1	52893			50238	3237	33130	33271	50883	50883					0.03917045050991419
YFNIAEKY	8	Unmodified	_YFNIAEKY_					0	0	0			REV__tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	REV__tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.2593994140625	2	524.260925	1046.5073	-1.2662	-0.00066384	-1.2309	-0.00064532	-2.4971	-0.0013092	524.2604164105937	31.591	0.16323	31.591	31.503	31.666	0					9	4	3	0	0	0	0.61938	1	10900	10900		45.952	5.3793	1	197610	+		50239	22071	33131	33272	50884	50884					-0.014096348223802124
YFPINYKI	8	Unmodified	_YFPINYKI_					0	0	0		nc|ENSG00000157368|Q6ZMJ4-2|IL34;ENSG00000157368|ENST00000288098|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.7587280273438	2	529.289485	1056.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.715	1	35.715	35.215	36.215	0								0	0	0	1.7419	1	13860	13860		42.474	1.6963	1				50240	5213	33132	33273	50885	50885					0.038398324539684836
YFPPNPSG	8	Unmodified	_YFPPNPSG_					0	0	0		MRPL28|p.E74Nfs*28|1|0.1|ENSG00000086504|chr16:370000-370000|G/-|frameshift_variant	MRPL28|p.E74Nfs*28|1|0.1|ENSG00000086504|chr16:370000-370000|G/-|frameshift_variant	MRPL28|p.E74Nfs*28|1|0.1|ENSG00000086504|chr16:370000-370000|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	439.70599365234375	2	439.705786	877.397018	0.19114	8.4046E-05	1.4701	0.00064641	1.6612	0.00073046	439.7063513788081	11.45	0.22496	11.45	11.281	11.506	0					11	7	2	0	0	0	0.78431	1	2318	2318		10.185	10.185	1	180600			50241	11375	33133	33274	50886	50886					-0.0465843509075512
YFQCRGTTL	9	Unmodified	_YFQCRGTTL_					0	0	0			REV__ENSG00000184497|ENST00000375353|TMEM255B	REV__ENSG00000184497|ENST00000375353|TMEM255B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7645263671875	2	544.763309	1087.51206	3.7015	0.0020164	-1.0654	-0.00058042	2.636	0.001436	544.7627351424247	23.26	0.36782	23.26	23.15	23.518	0					16	7	3	0	0	0	0.1236	1	7846	7846		73.975	7.5455	1	6853400	+		50242	16985	33134	33275	50887	50887					-0.028190739512638174
YFQSGRSR	8	Unmodified	_YFQSGRSR_					0	0	0		CDH7|p.R47C|1|0.07|ENSG00000081138|chr18:65762981-65762981|C/T|missense_variant;ENSG00000081138|ENST00000397968|CDH7	CDH7|p.R47C|1|0.07|ENSG00000081138|chr18:65762981-65762981|C/T|missense_variant	CDH7|p.R47C|1|0.07|ENSG00000081138|chr18:65762981-65762981|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.7503356933594	2	500.75159	999.488627	0.15332	7.6778E-05	-2.1877	-0.0010955	-2.0344	-0.0010187	500.75053342208145	14.183	0.076835	14.183	14.133	14.21	0					7	4	2	0	0	0	0.58597	1	2967	2967		51.335	8.4712	1	64970			50243	455	33135	33276	50888	50888					-0.011137516735630015
YFRSYKLL	8	Unmodified	_YFRSYKLL_					0	0	0		ENSG00000197498|ENST00000441448|RPF2	ENSG00000197498|ENST00000441448|RPF2	ENSG00000197498|ENST00000441448|RPF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.8116455078125	2	545.30821	1088.60187	3.7513	0.0020456	4.4286	0.0024149	8.1799	0.0044606	545.3099363133305	41.872	0.24169	41.872	41.739	41.981	0					23	7	4	0	0	0	0.7126	1	16685	16685		31.955	1.386	1	193680			50244	7467	33136	33277	50889	50889					0.06110923719620587
YFSLIPKT	8	Unmodified	_YFSLIPKT_					0	0	0		ENSG00000116031|ENST00000410009|CD207	ENSG00000116031|ENST00000410009|CD207	ENSG00000116031|ENST00000410009|CD207	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	484.77435302734375	2	484.776211	967.537869	-2.9162	-0.0014137	-1.4212	-0.00068896	-4.3374	-0.0021027	484.77551505546114	32.235	0.31651	32.235	32.131	32.447	0					15	9	2	0	0	0	0.5676	1	11178	11178		53.351	53.351	1	350180			50245	2955	33137	33278	50890	50890					0.052801435626633975
YFSQLQELCW	10	Unmodified	_YFSQLQELCW_					0	0	0		ENSG00000197888|ENST00000317746|UGT2B17;ENSG00000196620|ENST00000338206|UGT2B15;UGT2B17|p.E119K|1|0.37|ENSG00000197888|chr4:68568130-68568130|C/T|missense_variant;UGT2B15|p.N214Ifs*2|1|0.36|ENSG00000196620|chr4:68669978-68669978|T/-|frameshift_variant	ENSG00000197888|ENST00000317746|UGT2B17	ENSG00000197888|ENST00000317746|UGT2B17	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	658.8007202148438	2	658.802631	1315.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.632	1	25.632	25.132	26.132	0								0	0	0	0.4201	1	7732	7732		14.865	0	1				50246	7386	33138	33279	50891	50891					-0.054462664368429614
YFTSPVAPT	9	Unmodified	_YFTSPVAPT_					0	0	0			REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	492.3031005859375	2	491.74765	981.480748	-0.73449	-0.00036118	2.0558	0.0010109	1.3213	0.00064974	491.7485988732516	11.596	0.23198	11.596	11.418	11.65	0					11	6	3	0	0	0	0.5879	1	2391	2391		23.042	1.3402	1	294080	+		50247	12141	33139	33280	50892	50892					-0.010733237137174001
YFTTVVNL	8	Unmodified	_YFTTVVNL_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.7583312988281	2	478.758018	955.501483	-0.26286	-0.00012585	1.472	0.00070473	1.2091	0.00057889	478.75874895646973	15.626	0.095848	15.626	15.574	15.67	0					6	4	2	0	0	0	0.79719	1	3604	3604		18.324	0.95945	1	141310	+		50248	15664	33140	33281	50893	50893					0.02195266665944473
YFVLTFLW	8	Unmodified	_YFVLTFLW_					0	0	0		ENSG00000182170|ENST00000332314|MRGPRG	ENSG00000182170|ENST00000332314|MRGPRG	ENSG00000182170|ENST00000332314|MRGPRG	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.7957153320312	2	544.794404	1087.57425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.751	1	21.751	21.251	22.251	0								0	0	0	1.7419	1	6296	6296		20.482	0.48506	1				50249	6882	33141	33282	50894	50894					0.03397020459374289
YFVPPKED	8	Unmodified	_YFVPPKED_					0	0	0		ENSG00000198900|ENST00000361337|TOP1;TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	497.74786376953125	2	497.74765	993.480748	-0.71868	-0.00035772	1.4563	0.00072489	0.73767	0.00036717	497.74805264400163	11.347	0.06095	11.347	11.309	11.37	0					6	2	3	0	0	0	0.79882	1	2298	2298		19.36	0	1	199430			50250	7636	33142	33283	50895	50895					-0.016253237137220822
YGAASPSSAIR	11	Unmodified	_YGAASPSSAIR_					0	0	0		ENSG00000128645|ENST00000331462|HOXD1	ENSG00000128645|ENST00000331462|HOXD1	ENSG00000128645|ENST00000331462|HOXD1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.2801513671875	2	540.277638	1078.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.741	1	45.741	45.241	46.241	0								0	0	0	0.30675	1	18327	18327		51.193	8.3284	1				50251	3557	33143	33284	50896	50896					0.004593669495079666
YGAGAGSAKAG	11	Unmodified	_YGAGAGSAKAG_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	455.22479248046875	2	455.224874	908.435195	-1.1268	-0.00051296	1.2576	0.0005725	0.13081	5.9549E-05	455.2253007710379	16.14	0.069885	16.14	16.096	16.166	0					4	2	2	0	0	0	0.33926	1	3815	3815		58.23	12.278	1	51148	+		50252	15879	33144	33285	50897	50897					-0.022685491760967125
YGAVPSGF	8	Unmodified	_YGAVPSGF_					0	0	0		DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant;ENSG00000175920|ENST00000340083|DOK7;nc|ENSG00000175920|Q18PE1-3|DOK7;nc|ENSG00000175920|Q18PE1-4|DOK7	DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant	DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	399.1946716308594	2	399.195054	796.375555	-0.13785	-5.5029E-05	0.19895	7.9418E-05	0.061096	2.4389E-05	399.1950639108898	27.705	0.38071	27.705	27.494	27.875	0					16	9	2	0	0	0	0.67475	1	9050	9050		37.028	3.5355	1	240010			50253	840	33145	33286	50898	50898					-0.030778201194721078
YGAVPSGF	8	Unmodified	_YGAVPSGF_					0	0	0		DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant;ENSG00000175920|ENST00000340083|DOK7;nc|ENSG00000175920|Q18PE1-3|DOK7;nc|ENSG00000175920|Q18PE1-4|DOK7	DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant	DOK7|p.S422Hfs*34|2|0.24|ENSG00000175920|chr4:3493243-3493243|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	399.1949157714844	2	399.195054	796.375555	0.41301	0.00016487	-0.47228	-0.00018853	-0.059268	-2.3659E-05	399.19483147480577	27.806	0.71806	27.806	27.543	28.261	0					33	14	4	0	0	0	0.61433	1	9980	9980		46.766	3.1404	1	2041500			50254	840	33145	33286	50899	50899					-0.030778201194721078
YGDHTPLD	8	Unmodified	_YGDHTPLD_					0	0	0			REV__nc|ENSG00000081985|Q99665-3|IL12RB2	REV__nc|ENSG00000081985|Q99665-3|IL12RB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	459.2043151855469	2	459.203607	916.392661	0.83137	0.00038177	0.3976	0.00018258	1.229	0.00056435	459.20378441351005	49.539	0.24727	49.539	49.428	49.676	0					25	14	2	0	0	0	0.76283	1	15506	15506		25.45	4.9683	1	403920	+		50255	13311	33146	33287	50900	50900					-0.06887944304321536
YGDLCQCRNC	10	Unmodified	_YGDLCQCRNC_					0	0	0			REV__ENSG00000139626|ENST00000267082|ITGB7	REV__ENSG00000139626|ENST00000267082|ITGB7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.7236938476562	2	587.725543	1173.43653	-0.37511	-0.00022046	-3.3025	-0.001941	-3.6776	-0.0021614	587.7234674210141	24.501	0.18983	24.501	24.435	24.624	0					9	6	2	0	0	0	0.55603	1	7517	7517		39.253	5.0803	1	74827	+		50256	15037	33147	33288	50901	50901					-0.1432474246548736
YGDPYPLAIVN	11	Unmodified	_YGDPYPLAIVN_					0	0	0			REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	611.309814453125	2	611.311146	1220.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.941	1	28.941	28.441	29.441	0								0	0	0	0.45614	1	9380	9380		24.519	1.9395	1		+		50257	21784	33148	33289	50902	50902					0.006259774406089491
YGFQEKEAF	9	Unmodified	_YGFQEKEAF_					0	0	0		RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant;ENSG00000163481|ENST00000295704|RNF25	RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant	RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.7611083984375	2	559.761289	1117.50803	1.7821	0.00099758	-2.0144	-0.0011276	-0.23226	-0.00013001	559.7594495803329	36.683	0.40052	36.683	36.502	36.902	0					15	12	2	0	0	0	0.032383	1	14310	14310		106.68	55.348	1	289680			50258	5561	33149	33290	50903	50903					-0.04602840173333789
YGFQEKEAF	9	Unmodified	_YGFQEKEAF_					0	0	0		RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant;ENSG00000163481|ENST00000295704|RNF25	RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant	RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7613525390625	2	559.761289	1117.50803	1.8246	0.0010214	-1.1948	-0.00066882	0.62981	0.00035254	559.760378587611	36.673	1.3442	36.673	36.313	37.657	0					43	27	4	0	0	0	0.0049871	1	14261	14261		158.07	78.624	1	640120			50259	5561	33149	33290	50904	50904					-0.04602840173333789
YGGGFGGGGF	10	Unmodified	_YGGGFGGGGF_					0	0	0		CON__P02535-1	REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.1875305175781	2	438.18776	874.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.841	1	45.841	45.341	46.341	0								0	0	0	0.019003	1	15558	15558		120.06	9.7203	1		+	+	50260	12613	33150	33291	50905	50905					-0.08123892267599331
YGGGFGGGGF	10	Unmodified	_YGGGFGGGGF_					0	0	0		CON__P02535-1	REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	438.18804931640625	2	438.18776	874.360967	-0.61406	-0.00026908	0.59306	0.00025987	-0.021002	-9.2028E-06	438.18795627254536	45.84	0.10405	45.84	45.792	45.896	0					11	6	2	0	0	0	0.011705	1	15556	15556		136.44	16.378	1	86898	+	+	50261	12613	33150	33291	50906	50906					-0.08123892267599331
YGGGFGGGGF	10	Unmodified	_YGGGFGGGGF_					0	0	0		CON__P02535-1	REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	438.1875	2	438.18776	874.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.069	1	46.069	45.569	46.569	0								0	0	0	0.34018	1	18442	18442		44.531	3.9584	1		+	+	50262	12613	33150	33291	50907	50907					-0.08123892267599331
YGGPAGLVLKA	11	Unmodified	_YGGPAGLVLKA_					0	0	0			REV__ENST00000589645.5_1_17:42461260-42462716:-|nuORF	REV__ENST00000589645.5_1_17:42461260-42462716:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3037109375	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.981	1	56.981	56.481	57.481	0								0	0	0	0.45674	1	16992	16992		23.042	1.0826	1		+		50263	20510	33151	33292	50908	50908					0.0762661985700106
YGGRGVGG	8	Unmodified	_YGGRGVGG_					0	0	0		ANTXR2|p.R391I|1|0.14|ENSG00000163297|chr4:79983885-79983885|C/A|missense_variant;nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	ANTXR2|p.R391I|1|0.14|ENSG00000163297|chr4:79983885-79983885|C/A|missense_variant	ANTXR2|p.R391I|1|0.14|ENSG00000163297|chr4:79983885-79983885|C/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	361.6825256347656	2	361.682645	721.350737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.067	1	16.067	15.567	16.567	0								0	0	0	1.7419	1	4280	4280		21.702	7.0382	1				50264	170	33152	33293	50909	50909					-0.021084552021875425
YGGSGNGYNDF	11	Unmodified	_YGGSGNGYNDF_					0	0	0		ENST00000560893.1_1_15:35693406-35693832:+|nuORF	ENST00000560893.1_1_15:35693406-35693832:+|nuORF	ENST00000560893.1_1_15:35693406-35693832:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.7264404296875	2	575.725435	1149.43632	1.6875	0.00097152	-0.54525	-0.00031391	1.1422	0.00065761	575.7252088585051	37.909	0.20235	37.909	37.837	38.039	0					7	4	2	0	0	0	0.23242	1	14886	14886		70.399	5.2413	1	134540			50265	10696	33153	33294	50910	50910					-0.13242379597863874
YGGYGAPAAP	10	Unmodified	_YGGYGAPAAP_					0	0	0			REV__nc|ENSG00000105278|Q9UPR6-3|ZFR2	REV__nc|ENSG00000105278|Q9UPR6-3|ZFR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	462.2156677246094	2	462.216517	922.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.661	1	16.661	16.161	17.161	0								0	0	0	0.41219	1	3835	3835		26.796	1.222	1		+		50266	13764	33154	33295	50911	50911					-0.04583050062046823
YGHKMLHK	8	Unmodified	_YGHKMLHK_					0	0	0			REV__HIBADH|p.N57H|1|0.31|ENSG00000106049|chr7:27649556-27649556|T/G|missense_variant	REV__HIBADH|p.N57H|1|0.31|ENSG00000106049|chr7:27649556-27649556|T/G|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	507.2691345214844	2	507.271104	1012.52766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.079	1	13.079	12.579	13.579	0								0	0	0	1.7419	1	2547	2547		25.45	6.0902	1		+		50267	20747	33155	33296	50912	50912					0.021892573564400664
YGIIEEIKY	9	Unmodified	_YGIIEEIKY_					0	0	0		ENST00000481445.1_1_X:77160826-77160874:+|nuORF	ENST00000481445.1_1_X:77160826-77160874:+|nuORF	ENST00000481445.1_1_X:77160826-77160874:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	564.3023681640625	2	564.30279	1126.59103	3.4706	0.0019585	3.8227	0.0021572	7.2933	0.0041156	564.3044383862795	40.088	0.62537	40.088	39.813	40.439	0					31	14	3	0	0	0	0.53083	1	16018	16018		29.15	1.2673	1	435150			50268	9959	33156	33297	50913	50913					0.032794765546668714
YGLCISVPL	9	Unmodified	_YGLCISVPL_					0	0	0			REV__ENST00000258341.4_1_1:183113986-183114169:+|nuORF	REV__ENST00000258341.4_1_1:183113986-183114169:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	482.7640686035156	2	482.762246	963.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.537	1	23.537	23.037	24.037	0								0	0	0	0.28666	1	7087	7087		30.504	6.3009	1		+		50269	17996	33157	33298	50914	50914					0.02672497310925337
YGLPDAPAPPG	11	Unmodified	_YGLPDAPAPPG_					0	0	0			REV__RBM15B|p.S844Pfs*27|2|0.54|ENSG00000259956|chr3:51393922-51393922|G/-|frameshift_variant	REV__RBM15B|p.S844Pfs*27|2|0.54|ENSG00000259956|chr3:51393922-51393922|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.7655639648438	2	527.763832	1053.51311	3.4742	0.0018336	0.16054	8.4729E-05	3.6348	0.0019183	527.7633863608588	47.579	0.1866	47.579	47.478	47.665	0					12	10	2	0	0	0	0.63135	1	18990	18990		34.173	5.023	1	35729	+		50270	17772	33158	33299	50915	50915					-0.011505363107289668
YGMDWLIGQ	9	Unmodified	_YGMDWLIGQ_					0	0	0			REV__ENST00000483327.5_1_7:56132001-56140978:+|nuORF	REV__ENST00000483327.5_1_7:56132001-56140978:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7523193359375	2	541.75241	1081.49027	3.5528	0.0019247	-3.6719	-0.0019893	-0.1191	-6.4525E-05	541.7505949129047	20.419	0.36419	20.419	20.311	20.675	0					17	7	4	0	0	0	0.22377	1	6491	6491		58.782	5.8453	1	1533600	+		50271	19623	33159	33300	50916	50916					-0.047218786998428186
YGMPSTHAM	9	Unmodified	_YGMPSTHAM_					0	0	0		nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2	nc|ENSG00000163082|Q8IWX5-2|SGPP2	nc|ENSG00000163082|Q8IWX5-2|SGPP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.71063232421875	2	497.709688	993.404823	0.70244	0.00034961	-0.052891	-2.6324E-05	0.64955	0.00032329	497.709693819735	30.09	0.44384	30.09	29.812	30.256	0					17	11	2	0	0	0	0.51817	1	10792	10792		30.504	1.3541	1	165500			50272	5526	33160	33301	50917	50917					-0.09214367157153447
YGMPSTHTM	9	Unmodified	_YGMPSTHTM_					0	0	0		SGPP2|p.A167T|1|0.21|ENSG00000163082|chr2:222521887-222521887|G/A|missense_variant	SGPP2|p.A167T|1|0.21|ENSG00000163082|chr2:222521887-222521887|G/A|missense_variant	SGPP2|p.A167T|1|0.21|ENSG00000163082|chr2:222521887-222521887|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.7146606445312	2	512.71497	1023.41539	-0.28183	-0.0001445	-0.0012766	-6.5456E-07	-0.28311	-0.00014515	512.715336136758	30.562	0.3493	30.562	30.346	30.695	0					25	12	3	0	0	0	0.37197	1	10021	10021		44.117	1.6423	1	150300			50273	22391	33161	33302	50918	50918					-0.095383845027186
YGNISVRCL	9	Unmodified	_YGNISVRCL_					0	0	0			REV__nc|ENSG00000011275|Q9NWF9-3|RNF216	REV__nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.763916015625	2	512.765852	1023.51715	0.010824	5.55E-06	1.8837	0.00096588	1.8945	0.00097143	513.2678316148734	35.279	0.68994	35.279	35.061	35.751	0					38	18	4	0	0	0	0.40353	1	13253	13253		41.427	0	1	705980	+		50274	12903	33162	33303	50919	50919					0.006332299113523732
YGPGGLHAA	9	Unmodified	_YGPGGLHAA_					0	0	0		ENST00000255890.8_1_22:23742600-23742699:-|nuORF;ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant;nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	ENST00000255890.8_1_22:23742600-23742699:-|nuORF	ENST00000255890.8_1_22:23742600-23742699:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	421.71087646484375	2	421.711402	841.408252	-0.14625	-6.1675E-05	-0.34815	-0.00014682	-0.4944	-0.00020849	421.71124229957576	26.925	0.36211	26.925	26.677	27.039	0					11	7	2	0	0	0	0.43174	1	9738	9738		39.021	1.993	1	61209			50275	1947	33163	33304	50920	50920					-0.01879612996629021
YGPGVSTDDI	10	Unmodified	_YGPGVSTDDI_					0	0	0		ENSG00000187323|ENST00000442544|DCC;DCC|p.R603C|1|0.27|ENSG00000187323|chr18:53207763-53207763|C/T|missense_variant	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	512.2353515625	2	512.235104	1022.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.025	1	37.025	36.525	37.525	0								0	0	0	0.35368	1	12134	12134		42.396	1.618	1				50276	7193	33164	33305	50921	50921					-0.05467423306959063
YGPLGPVGL	9	Unmodified	_YGPLGPVGL_					0	0	0			REV__ENSG00000130635|ENST00000371817|COL5A1;REV__nc|ENSG00000204248|P13942-8|COL11A2;REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	436.7451171875	2	436.747453	871.480354	-3.0571	-0.0013352	-2.2058	-0.00096336	-5.2628	-0.0022985	436.74662971677935	25.392	0.19227	25.392	25.282	25.474	0					10	4	3	0	0	0	0.21025	1	8072	8072		60.404	5.6273	1	171630	+		50277	13294;14586;17471	33165	33306	50922	50922					0.03947301357084143
YGPSSAGNG	9	Unmodified	_YGPSSAGNG_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.1733703613281	2	405.17485	808.335146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.868	1	27.868	27.368	28.368	0								0	0	0	0.35899	1	10146	10146		23.042	1.3402	1				50278	3641	33166	33307	50923	50923					-0.0766878650988474
YGQKDLLFK	9	Unmodified	_YGQKDLLFK_					0	0	0		ENSG00000163975|ENST00000296350|MELTF;MFI2|p.Y365Tfs*54|2|0.47|ENSG00000163975|chr3:197015506-197015506|G/-|frameshift_variant;MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	371.2096252441406	3	371.209725	1110.60735	0.25692	9.537E-05	-0.51792	-0.00019226	-0.26101	-9.6888E-05	371.20946313911367	32.323	0.24092	32.323	32.191	32.432	0					9	5	2	0	0	0	0.19605	1	12273	12273		62.107	7.3851	1	135480			50279	5635	33167	33308	50924	50924					0.0564660251143323
YGQKLSKLA	9	Unmodified	_YGQKLSKLA_					0	0	0		ENST00000469442.5_1_2:85978949-86014010:+|nuORF;ENST00000463422.5_1_2:85981774-86000028:+|nuORF;ENSG00000168874|ENST00000306279|ATOH8;nc|ENSG00000168874|Q96SQ7-2|ATOH8	ENST00000469442.5_1_2:85978949-86014010:+|nuORF	ENST00000469442.5_1_2:85978949-86014010:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	336.5342102050781	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.525	1	56.525	56.025	57.025	0								0	0	0	0.37496	1	20150	20150		25.574	13.938	1				50280	6130	33168	33309	50925	50925					0.07810333339944009
YGQQSTATL	9	Unmodified	_YGQQSTATL_					0	0	0		ENSG00000154134|ENST00000397801|ROBO3;ENST00000527245.5_1_11:124747729-124748693:+|nuORF	ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	484.73785400390625	2	484.737814	967.461075	0.035397	1.7158E-05	-0.72183	-0.0003499	-0.68643	-0.00033274	484.7374726589492	28.564	0.22786	28.564	28.48	28.708	0					23	10	3	0	0	0	0.13267	1	8924	8924		71.877	3.0906	1	250670			50281	5078	33169	33310	50926	50926					-0.0239569972445679
YGQQSTATL	9	Unmodified	_YGQQSTATL_					0	0	0		ENSG00000154134|ENST00000397801|ROBO3;ENST00000527245.5_1_11:124747729-124748693:+|nuORF	ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	484.7375793457031	2	484.737814	967.461075	-0.6401	-0.00031028	0.03166	1.5347E-05	-0.60844	-0.00029493	484.7378799279476	28.854	0.30795	28.854	28.745	29.053	0					13	6	3	0	0	0	0.19605	1	10607	10607		62.107	3.3255	1	374320			50282	5078	33169	33310	50927	50927					-0.0239569972445679
YGRDRQAAR	9	Unmodified	_YGRDRQAAR_					0	0	0		ENST00000474291.1_1_7:97911865-97912000:+|nuORF	ENST00000474291.1_1_7:97911865-97912000:+|nuORF	ENST00000474291.1_1_7:97911865-97912000:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.7883911132812	2	546.786496	1091.55844	1.858	0.001016	2.2888	0.0012515	4.1468	0.0022674	546.7874467303151	31.474	0.13233	31.474	31.413	31.545	0					6	3	2	0	0	0	0.44593	1	11485	11485		16.473	4.2663	1	87748			50283	9893	33170	33311	50928	50928					0.016321269950367423
YGSESGEEDF	10	Unmodified	_YGSESGEEDF_					0	0	0		ENST00000565121.1_1_15:75645991-75646635:+|nuORF;ENST00000567393.5_1_15:75645991-75647372:+|nuORF;ENSG00000140398|ENST00000355059|NEIL1	ENST00000565121.1_1_15:75645991-75646635:+|nuORF	ENST00000565121.1_1_15:75645991-75646635:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	560.2088012695312	2	560.209283	1118.40401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.446	1	16.446	15.946	16.946	0								0	0	0	0.4201	1	3946	3946		10.265	1.4429	1				50284	4383	33171	33312	50929	50929					-0.15045211791493784
YGSSPPPSR	9	Unmodified	_YGSSPPPSR_					0	0	0			REV__ENST00000475502.1_1_3:147108719-147109820:-|nuORF	REV__ENST00000475502.1_1_3:147108719-147109820:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2339172363281	2	474.232699	946.450845	2.3616	0.00112	0.23691	0.00011235	2.5986	0.0012323	474.23297417431473	21.898	0.31612	21.898	21.755	22.071	0					19	6	4	0	0	0	0.26904	1	7194	7194		53.351	53.351	1	2908100	+		50285	16595	33172	33313	50930	50930					-0.024522626590396612
YGTFLANN	8	Unmodified	_YGTFLANN_					0	0	0		MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.21527099609375	2	450.216517	898.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.383	1	47.383	46.883	47.883	0								0	0	0	1.7419	1	17391	17391		40.573	3.4135	1				50286	2527	33173	33314	50931	50931					-0.034790500620488274
YGTLILKNY	9	Unmodified	_YGTLILKNY_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	542.8062744140625	2	542.8055	1083.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.446	1	45.446	44.946	45.946	0								0	0	0	0.34845	1	18200	18200		25.574	1.3713	1				50287	22640	33174	33315	50932	50932					0.05799200137153093
YGVKAIIQPG	10	Unmodified	_YGVKAIIQPG_					0	0	0		tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.303955078125	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.244	1	50.244	49.744	50.744	0								0	0	0	0.4201	1	18125	18125		21.96	1.4781	1				50288	22808	33175	33316	50933	50933					0.0762661985700106
YGYGHESEL	9	Unmodified	_YGYGHESEL_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	527.7279663085938	2	527.727446	1053.44034	0.55579	0.0002933	-1.0888	-0.00057457	-0.53298	-0.00028127	527.7279208054533	29.042	0.12527	29.042	28.971	29.097	0					7	5	2	0	0	0	0.26904	1	9122	9122		53.351	20.539	1	68110			50289	6462	33176	33317	50934	50934					-0.08424290104130705
YGYGHESEL	9	Unmodified	_YGYGHESEL_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	527.7276611328125	2	527.727446	1053.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.299	1	29.299	28.799	29.799	0								0	0	0	0.03352	1	10448	10448		94.006	49.89	1				50290	6462	33176	33317	50935	50935					-0.08424290104130705
YHAPPLSAIT	10	Unmodified	_YHAPPLSAIT_					0	0	0		ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	535.2860717773438	2	535.287474	1068.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.275	1	13.275	12.775	13.775	0								0	0	0	0.4201	1	2728	2728		21.96	7.095	1				50291	6420	33177	33318	50936	50936					0.028857429602794582
YHAVSVTQ	8	Unmodified	_YHAVSVTQ_					0	0	0		ENST00000571669.6_1_17:2322656-2322995:-|nuORF	ENST00000571669.6_1_17:2322656-2322995:-|nuORF	ENST00000571669.6_1_17:2322656-2322995:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	452.7304382324219	2	452.729792	903.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.486	1	41.486	40.986	41.986	0								0	0	0	1.7419	1	15764	15764		30.504	0	1				50292	10805	33178	33319	50937	50937					-0.010553611707109667
YHAVVLLDERS	11	Unmodified	_YHAVVLLDERS_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	651.3440551757812	2	651.346052	1300.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.516	1	23.516	23.016	24.016	0								0	0	0	0.3557	1	8112	8112		44.377	6.5657	1				50293	3160	33179	33320	50938	50938					0.0392385610925885
YHCLRPAGV	9	Unmodified	_YHCLRPAGV_					0	0	0			REV__ENST00000580714.1_1_17:26733612-26733768:+|nuORF	REV__ENST00000580714.1_1_17:26733612-26733768:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	508.26165771484375	2	508.260736	1014.50692	2.9717	0.0015104	0.2466	0.00012534	3.2183	0.0016357	508.26089319147286	13.187	1.3437	13.187	12.947	14.29	0					75	28	8	0	0	0	0.41354	1	3183	3183		40.573	40.573	1	46606000	+		50294	20449	33180	33321	50939	50939					0.00024666976776188676
YHGDNEEEE	9	Unmodified	_YHGDNEEEE_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	561.2041625976562	2	561.204532	1120.39451	-0.0075222	-4.2215E-06	-0.74338	-0.00041719	-0.7509	-0.00042141	561.204182802063	13.186	0.24716	13.186	13.129	13.376	0					15	5	4	0	0	0	0.59802	1	3158	3158		21.96	1.013	1	1654500	+		50295	13129	33181	33322	50940	50940					-0.1608698007703424
YHGPATVSY	9	Unmodified	_YHGPATVSY_					0	0	0		ENST00000249364.8_1_7:128379460-128388729:+|nuORF	ENST00000249364.8_1_7:128379460-128388729:+|nuORF	ENST00000249364.8_1_7:128379460-128388729:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	497.7361755371094	2	497.735074	993.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.203	1	38.203	37.703	38.703	0								0	0	0	0.22106	1	14507	14507		47.916	0.25827	1				50296	8238	33182	33323	50941	50941					-0.0413937851629953
YHGTTGILY	9	Unmodified	_YHGTTGILY_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7608642578125	2	512.758549	1023.50255	1.2724	0.00065246	2.4266	0.0012443	3.6991	0.0018967	512.7598884613743	40.783	0.21633	40.783	40.711	40.927	0					12	5	3	0	0	0	0.26904	1	16065	16065		53.351	11.925	1	201530			50297	4600	33183	33324	50942	50942					-0.008265189651410765
YHPRKSTAATS	11	Unmodified	_YHPRKSTAATS_					0	0	0		KANK1|p.L125Sfs*27|1|0.42|ENSG00000107104|chr9:711132-711133|-/C|frameshift_variant	KANK1|p.L125Sfs*27|1|0.42|ENSG00000107104|chr9:711132-711133|-/C|frameshift_variant	KANK1|p.L125Sfs*27|1|0.42|ENSG00000107104|chr9:711132-711133|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	406.87896728515625	3	406.879038	1217.61528	-0.54845	-0.00022315	0.66386	0.00027011	0.11541	4.696E-05	406.87933533198986	15.83	0.21139	15.83	15.726	15.937	0					14	5	4	0	0	0	0.69004	1	4190	4190		28.577	0.93281	1	311050			50298	11237	33184	33325	50943	50943					0.01518129760870579
YHVAEQLKVSQ	11	Unmodified	_YHVAEQLKVSQ_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	651.3446044921875	2	651.346052	1300.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.282	1	23.282	22.782	23.782	0								0	0	0	0.45614	1	6975	6975		24.519	0.99649	1				50299	5442	33185	33326	50944	50944					0.039238561092361124
YIAAFPPHEGA	11	Unmodified	_YIAAFPPHEGA_					0	0	0		ANO3|p.I617Lfs*8|1|0.05|ENSG00000134343|chr11:26624469-26624469|A/-|frameshift_variant;ANO3|p.L701*|1|0.45|ENSG00000134343|chr11:26639198-26639198|T/-|frameshift_variant;ANO3|p.F764Lfs*11|1|0.14|ENSG00000134343|chr11:26643195-26643195|T/-|frameshift_variant;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	ANO3|p.I617Lfs*8|1|0.05|ENSG00000134343|chr11:26624469-26624469|A/-|frameshift_variant	ANO3|p.I617Lfs*8|1|0.05|ENSG00000134343|chr11:26624469-26624469|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.79248046875	2	586.790381	1171.56621	3.1993	0.0018773	-0.002031	-1.1918E-06	3.1972	0.0018761	586.7907429177185	40.254	0.5439	40.254	40.034	40.578	0					30	12	3	0	0	0	0.60833	1	15919	15919		42.396	15.349	1	747380			50300	165	33186	33327	50945	50945					-0.01271158528061278
YICGSHGVE	9	Carbamidomethyl (C)	_YIC(Carbamidomethyl (C))GSHGVE_	YIC(1)GSHGVE		YIC(82)GSHGVE		0	1	0		ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	ENSG00000172086|ENST00000347055|KRCC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.2247009277344	2	511.224017	1020.43348	1.0067	0.00051464	-1.5956	-0.00081571	-0.58892	-0.00030107	511.2232402110837	31.174	0.59062	31.174	30.955	31.545	0					35	14	3	0	0	0	0.087582	1	11292	11292		82.305	10.428	1	314860			50301	6345	33187	33328	50946	50946	268				-0.07591926256350234
YICMGRPL	8	Unmodified	_YICMGRPL_					0	0	0			REV__nc|ENSG00000260220|A0A096LP49-2|CCDC187	REV__nc|ENSG00000260220|A0A096LP49-2|CCDC187	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.74041748046875	2	476.740791	951.467029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.214	1	25.214	24.714	25.714	0								0	0	0	1.7419	1	7815	7815		37.028	1.4102	1		+		50302	17774	33188	33329	50947	50947					-0.010645960181477676
YICRCLFKA	9	Unmodified	_YICRCLFKA_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	558.7900390625	2	558.788272	1115.56199	-0.13309	-7.4372E-05	4.451	0.0024872	4.3179	0.0024128	558.7903215830858	46.96	0.1381	46.96	46.885	47.023	0					10	7	2	0	0	0	0.30268	1	17991	17991		50.025	2.3672	1	43277			50303	7189	33189	33330	50948	50948					0.00883337453024069
YICTECGKVF	10	Unmodified	_YICTECGKVF_					0	0	0		nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.7677612304688	2	581.767203	1161.51985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.728	1	29.728	29.228	30.228	0								0	0	0	0.40862	1	9410	9410		27.882	1.1893	1				50304	4765	33190	33331	50949	50949					-0.0544468274601968
YIDDELKAV	9	Unmodified	_YIDDELKAV_					0	0	0			REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7724609375	2	533.276772	1064.53899	1.7344	0.00092491	-2.4278	-0.0012947	-0.6934	-0.00036977	533.2752975997158	37.697	0.59089	37.697	37.49	38.081	0					31	18	2	0	0	0	0.37197	1	14801	14801		44.117	0	1	762970	+		50305	15156	33191	33332	50950	50950					0.009303131408842091
YIDKARVA	8	Unmodified	_YIDKARVA_					0	0	0			REV__ATF7IP|p.R1251H|1|0.38|ENSG00000171681|chr12:14498012-14498012|G/A|missense_variant	REV__ATF7IP|p.R1251H|1|0.38|ENSG00000171681|chr12:14498012-14498012|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2708740234375	2	468.269084	934.523616	0.63421	0.00029698	-1.221	-0.00057178	-0.58683	-0.0002748	468.26861095973896	32.809	0.42595	32.809	32.639	33.065	0					32	10	5	0	0	0	0.6282	1	12566	12566		44.531	0	1	2425700	+		50306	12244	33192	33333	50951	50951					0.05373491134366759
YIEDPVQPI	9	Unmodified	_YIEDPVQPI_					0	0	0			REV__ENSG00000133246|ENST00000423345|PRAM1	REV__ENSG00000133246|ENST00000423345|PRAM1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2801513671875	2	537.279315	1072.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.84	1	36.84	36.34	37.34	0								0	0	0	0.2591	1	13925	13925		42.396	1.618	1		+		50307	14702	33193	33334	50952	50952					0.010706170035291507
YIEEVQVGK	9	Unmodified	_YIEEVQVGK_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.7852783203125	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.702	1	39.702	39.202	40.202	0								0	0	0	0.36266	1	14143	14143		21.96	20.755	1		+		50308	15935	33194	33335	50953	50953					0.025740193778119647
YIENTRVY	8	Unmodified	_YIENTRVY_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2697143554688	2	529.269281	1056.52401	0.088922	4.7064E-05	1.3361	0.00070718	1.4251	0.00075424	529.2696396575452	32.646	0.228	32.646	32.573	32.801	0					12	9	2	0	0	0	0.39542	1	10928	10928		71.378	8.0716	1	79765	+		50309	16808	33195	33336	50954	50954					-0.0019913393641672883
YIEYIAGI	8	Unmodified	_YIEYIAGI_					0	0	0			REV__tr|U7SLS3|U7SLS3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01877PE=4SV=1	REV__tr|U7SLS3|U7SLS3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01877PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	471.2545471191406	2	471.252569	940.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.744	1	22.744	22.244	23.244	0								0	0	0	1.7419	1	6477	6477		54.765	7.9982	1		+		50310	21776	33196	33337	50955	50955					0.017958642916710232
YIEYIAGI	8	Unmodified	_YIEYIAGI_					0	0	0			REV__tr|U7SLS3|U7SLS3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01877PE=4SV=1	REV__tr|U7SLS3|U7SLS3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01877PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	471.2524108886719	2	471.252569	940.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.079	1	23.079	22.579	23.579	0								0	0	0	1.7419	1	7589	7589		62.978	8.2138	1		+		50311	21776	33196	33337	50956	50956					0.017958642916710232
YIGLKQKTT	9	Unmodified	_YIGLKQKTT_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	351.20965576171875	3	351.209725	1050.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.5	1	23.5	23	24	0								0	0	0	0.37821	1	7182	7182		18.262	0.79408	1		+		50312	13480	33197	33338	50957	50957					0.08406602511422534
YIGSNHSSL	9	Unmodified	_YIGSNHSSL_					0	0	0		nc|ENSG00000154639|P78310-7|CXADR;nc|ENSG00000154639|P78310-2|CXADR;nc|ENSG00000154639|P78310-6|CXADR;ENSG00000154639|ENST00000284878|CXADR	nc|ENSG00000154639|P78310-7|CXADR	nc|ENSG00000154639|P78310-7|CXADR	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	489.2379455566406	2	489.237981	976.461409	-0.030948	-1.5141E-05	-0.2143	-0.00010485	-0.24525	-0.00011999	489.23801845845975	24.576	0.11937	24.576	24.497	24.616	0					6	3	2	0	0	0	0.44593	1	7263	7263		37.812	0.78304	1	101890			50313	5093	33198	33339	50958	50958					-0.027762800046275515
YIHGTDKKQVL	11	Unmodified	_YIHGTDKKQVL_					0	0	0			REV__ENSG00000211455|ENST00000389032|STK38L	REV__ENSG00000211455|ENST00000389032|STK38L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.5798034667969	3	434.578588	1300.71394	2.6242	0.0011404	-0.32276	-0.00014026	2.3014	0.0010002	434.5784554743672	29.459	0.75633	29.459	29.174	29.93	0					42	15	4	0	0	0	0.4771	1	10814	10814		45.908	10.73	1	713800	+		50314	17546	33199	33340	50959	50959					0.07560733005925613
YIHKALAN	8	Unmodified	_YIHKALAN_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	465.26336669921875	2	465.263802	928.513051	-0.51944	-0.00024167	0.52506	0.00024429	0.0056266	2.6178E-06	465.2640057370447	29.623	0.48217	29.623	29.458	29.94	0					19	13	2	0	0	0	0.68754	1	9998	9998		35.201	0	1	96328	+		50315	16181	33200	33341	50960	50960					0.04593508479945285
YIHVGAQL	8	Unmodified	_YIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	450.75018310546875	2	450.750527	899.486502	-0.30936	-0.00013944	-0.29662	-0.0001337	-0.60597	-0.00027314	450.75037424471674	33.912	0.48364	33.912	33.802	34.286	0					60	20	5	0	0	0	0.29779	1	11032	11032		83.287	28.523	1	3184100			50316	6618	33201	33342	50961	50961					0.03273819588616789
YIHVGAQL	8	Unmodified	_YIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.75030517578125	2	450.750527	899.486502	-0.49162	-0.0002216	-0.18531	-8.353E-05	-0.67694	-0.00030513	450.7504281382851	34.179	1.0072	34.179	34.026	35.033	0					62	26	4	0	0	0	0.24228	3	12678	12678;12823;12843		114.6	65.897	1	16579000			50317	6618	33201	33342	50962;50963;50964	50962					0.03273819588616789
YIHVGAQL	8	Unmodified	_YIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.75006103515625	2	450.750527	899.486502	-1.1883	-0.00053564	0.71061	0.00032031	-0.47773	-0.00021534	450.7508368851184	33.988	0.56247	33.988	33.864	34.427	0					56	24	4	0	0	0	0.22124	2	11416	11416;11559		130.01	64.109	1	3263100			50318	6618	33201	33342	50965;50966	50965					0.03273819588616789
YIHVGAQL	8	Unmodified	_YIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	450.7500915527344	2	450.750527	899.486502	-1.0915	-0.00049201	0.64736	0.0002918	-0.44417	-0.00020021	450.7507006493748	33.96	0.24243	33.96	33.875	34.118	0					15	9	2	0	0	0	0.30928	1	11434	11434		81.716	24.263	1	265890			50319	6618	33201	33342	50967	50967					0.03273819588616789
YIHVGAQL	8	Unmodified	_YIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	450.7503356933594	2	450.750527	899.486502	-0.31594	-0.00014241	-0.37073	-0.00016711	-0.68667	-0.00030951	450.75040689647346	34.169	0.42641	34.169	34.028	34.454	0					27	10	4	0	0	0	0.24228	1	13133	13133		114.6	46.111	1	1293100			50320	6618	33201	33342	50968	50968					0.03273819588616789
YIIQPFEPK	9	Unmodified	_YIIQPFEPK_					0	0	0			REV__USP28|p.L386P|1|0.27|ENSG00000048028|chr11:113827263-113827263|A/G|missense_variant	REV__USP28|p.L386P|1|0.27|ENSG00000048028|chr11:113827263-113827263|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	567.8116455078125	2	567.813325	1133.6121	0.17772	0.00010091	-3.2646	-0.0018537	-3.0869	-0.0017528	567.8112733511186	39.571	0.081429	39.571	39.526	39.608	0					5	3	2	0	0	0	0.17854	1	15069	15069		64.207	8.7031	1	49755	+		50321	22268	33202	33343	50969	50969					0.050634866541713563
YIIVSAVAEG	10	Unmodified	_YIIVSAVAEG_					0	0	0			REV__CELSR2|p.R2253C|1|0.29|ENSG00000143126|chr1:109269235-109269235|C/T|missense_variant	REV__CELSR2|p.R2253C|1|0.29|ENSG00000143126|chr1:109269235-109269235|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.28271484375	2	511.281857	1020.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.701	1	29.701	29.201	30.201	0								0	0	0	0.29716	1	10026	10026		51.335	5.3835	1		+		50322	12417	33203	33344	50970	50970					0.03970920866140659
YIIYGMYF	8	Unmodified	_YIIYGMYF_					0	0	0		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	535.2587280273438	2	535.256797	1068.49904	3.3639	0.0018006	0.65505	0.00035062	4.019	0.0021512	535.2567204488051	40.838	0.70731	40.838	40.52	41.227	0					44	14	5	0	0	0	0.6282	1	16252	16252		33.493	0	1	381970			50323	2216	33204	33345	50971	50971					-0.032469050633608276
YIKDESRNVY	10	Unmodified	_YIKDESRNVY_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.N1661Tfs*23|1|0.07|ENSG00000120549|chr10:24544247-24544247|A/-|frameshift_variant;KIAA1217|p.Q1199Kfs*12|1|0.25|ENSG00000120549|chr10:24542749-24542749|C/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;KIAA1217|p.Y714Ifs*4|1|0.27|ENSG00000120549|chr10:24513391-24513392|-/A|frameshift_variant;KIAA1217|p.R976Kfs*8|1|0.4|ENSG00000120549|chr10:24527957-24527958|-/A|frameshift_variant;KIAA1217|p.R976Gfs*16|1|0.31|ENSG00000120549|chr10:24527958-24527958|A/-|frameshift_variant;KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	643.8240966796875	2	643.822409	1285.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.277	1	46.277	45.777	46.777	0								0	0	0	0.4044	1	17807	17807		29.17	1.0886	1				50324	3177	33205	33346	50972	50972					-0.001124231617723126
YIKMRIYK	8	Unmodified	_YIKMRIYK_					0	0	0			REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	557.8270263671875	2	557.825712	1113.63687	0.11896	6.6358E-05	2.2656	0.0012638	2.3845	0.0013302	557.8268603672681	26.009	0.10346	26.009	25.93	26.033	0					6	3	2	0	0	0	0.79882	1	8130	8130		19.36	0	1	53585	+		50325	19744	33206	33347	50973	50973					0.08459843255900523
YIKNKKGD	8	Unmodified	_YIKNKKGD_					0	0	0			REV__ENST00000444292.2_1_X:95228575-95229244:-|nuORF	REV__ENST00000444292.2_1_X:95228575-95229244:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.2741394042969	2	483.274367	964.53418	0.59362	0.00028688	-1.0703	-0.00051725	-0.47668	-0.00023037	483.27395355519224	21.701	0.18434	21.701	21.653	21.837	0					6	4	2	0	0	0	0.52345	1	6950	6950		57.811	4.8746	1	363650	+		50326	14864	33207	33348	50974	50974					0.05049473788812975
YIKNKKGD	8	Unmodified	_YIKNKKGD_					0	0	0			REV__ENST00000444292.2_1_X:95228575-95229244:-|nuORF	REV__ENST00000444292.2_1_X:95228575-95229244:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.2740173339844	2	483.274367	964.53418	-0.59844	-0.00028921	-0.022581	-1.0913E-05	-0.62102	-0.00030012	483.2743925427918	21.595	0.31789	21.595	21.437	21.755	0					9	6	3	0	0	0	0.7126	1	7093	7093		31.955	0.42505	1	199470	+		50327	14864	33207	33348	50975	50975					0.05049473788812975
YILAKSRS	8	Unmodified	_YILAKSRS_					0	0	0		ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG;OTOG|p.Q1138Rfs*24|1|0.12|ENSG00000188162|chr11:17594130-17594130|C/-|frameshift_variant	ENSG00000188162|ENST00000399397|OTOG	ENSG00000188162|ENST00000399397|OTOG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	469.27899169921875	2	469.276909	936.539266	2.5751	0.0012084	1.384	0.0006495	3.9591	0.0018579	469.27739855380304	48.83	0.29731	48.83	48.78	49.077	0					26	16	3	0	0	0	0.65276	1	19372	19372		40.573	1.3198	1	252000			50328	7240	33208	33349	50976	50976					0.06845777651426488
YILCCLFF	8	Unmodified	_YILCCLFF_					0	0	0		ENST00000508935.1_1_5:102509572-102509677:+|nuORF	ENST00000508935.1_1_5:102509572-102509677:+|nuORF	ENST00000508935.1_1_5:102509572-102509677:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2461853027344	2	511.247917	1020.48128	1.2267	0.00062717	-0.93734	-0.00047921	0.28941	0.00014796	511.7490360060544	29.894	0.66766	29.894	29.65	30.317	0					27	14	3	0	0	0	0.31527	1	11206	11206		80.997	9.7013	1	877020			50329	10216	33209	33350	50977	50977					-0.028139435898538068
YILFFLGDP	9	Unmodified	_YILFFLGDP_					0	0	0		SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant;nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3;ENSG00000139508|ENST00000266943|SLC46A3;nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3	SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant	SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.7880859375	2	542.789318	1083.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.184	1	42.184	41.684	42.684	0								0	0	0	0.24438	1	16564	16564		44.531	16.649	1				50330	4334	33210	33351	50978	50978					0.025644127341365675
YILNKRYE	8	Unmodified	_YILNKRYE_					0	0	0		ENST00000478863.5_1_19:10666000-10676642:-|nuORF;ENSG00000129347|ENST00000312962|KRI1	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	549.8023681640625	2	549.800749	1097.58694	-1.4508	-0.00079764	3.0514	0.0016776	1.6006	0.00088	549.8025160137789	40.017	0.15402	40.017	39.941	40.095	0					14	8	3	0	0	0	0.49216	1	14237	14237		60.972	0.85368	1	125470			50331	3593	33211	33352	50979	50979					0.04205431851596586
YILRNPTT	8	Unmodified	_YILRNPTT_					0	0	0			REV__ENSG00000278053|ENST00000617633|DDX52	REV__ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.2733154296875	2	489.274367	976.53418	-0.43295	-0.00021183	-0.16018	-7.8371E-05	-0.59313	-0.0002902	489.2742181537541	36.9	0.79807	36.9	36.663	37.462	0					58	22	4	0	0	0	0.8006	1	14132	14132		20.482	0.48506	1	6682000	+		50332	17838	33212	33353	50980	50980					0.04497473788796924
YILSGHDTI	9	Unmodified	_YILSGHDTI_					0	0	0			REV__nc|ENSG00000132109|P19474-2|TRIM21	REV__nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	509.7641296386719	2	509.763832	1017.51311	-0.4801	-0.00024474	-0.10104	-5.1507E-05	-0.58114	-0.00029624	509.76397475581393	28.8	0.30386	28.8	28.693	28.996	0					19	11	3	0	0	0	0.27249	1	9302	9302		55.504	5.4797	1	212000	+		50333	14644	33213	33354	50981	50981					0.0050546368928507945
YILTPAFLF	9	Unmodified	_YILTPAFLF_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.8058471679688	2	542.807511	1083.60047	0.26764	0.00014528	-3.0007	-0.0016288	-2.7331	-0.0014835	542.8057765501085	31.404	0.15825	31.404	31.324	31.482	0					10	6	2	0	0	0	0.57706	1	10397	10397		24.203	2.5004	1	80821	+		50334	13064	33214	33355	50982	50982					0.06201289630848805
YIMEEHDS	8	Unmodified	_YIMEEHDS_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.2092895507812	2	512.208032	1022.40151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.628	1	19.628	19.128	20.128	0								0	0	0	1.7419	1	6237	6237		26.796	4.8362	1				50335	4282	33215	33356	50983	50983					-0.1087933873016027
YIMSHQIFL	9	Unmodified	_YIMSHQIFL_					0	0	0			REV__ENST00000592618.5_1_19:1010351-1011343:-|nuORF	REV__ENST00000592618.5_1_19:1010351-1011343:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	384.5362243652344	3	384.535444	1150.5845	0.84436	0.00032469	1.3	0.0004999	2.1444	0.00082459	384.5358714036393	24.364	0.28015	24.364	24.265	24.545	0					11	6	2	0	0	0	0.35045	1	8205	8205		52.937	24.36	1	1651200	+		50336	16864	33216	33357	50984	50984					0.01523260122303327
YINLKYATL	9	Unmodified	_YINLKYATL_					0	0	0			REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	366.8778991699219	3	366.877975	1097.6121	0.083012	3.0455E-05	0.45863	0.00016826	0.54164	0.00019872	366.8778118733222	28.199	0.36329	28.199	28.082	28.445	0					23	11	3	0	0	0	0.37197	1	8764	8764		44.117	1.7207	1	154420	+		50337	19969	33217	33358	50985	50985					0.06719486654174034
YINLKYATL	9	Unmodified	_YINLKYATL_					0	0	0			REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	366.8779602050781	3	366.877975	1097.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.416	1	28.416	27.916	28.916	0								0	0	0	0.1219	1	10038	10038		66.429	0.96389	1		+		50338	19969	33217	33358	50986	50986					0.06719486654174034
YINLKYATL	9	Unmodified	_YINLKYATL_					0	0	0			REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	366.8779602050781	3	366.877975	1097.6121	1.162	0.00042631	-1.1004	-0.0004037	0.061626	2.2609E-05	366.877539403995	28.424	0.26146	28.424	28.319	28.581	0					13	5	3	0	0	0	0.30951	1	10424	10424		49.442	8.6634	1	1102500	+		50339	19969	33217	33358	50987	50987					0.06719486654174034
YIPEQRADL	9	Unmodified	_YIPEQRADL_					0	0	0		ENST00000514654.5_1_3:130694228-130698117:+|nuORF	ENST00000514654.5_1_3:130694228-130698117:+|nuORF	ENST00000514654.5_1_3:130694228-130698117:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7916870117188	2	552.787838	1103.56112	3.6558	0.0020209	1.2992	0.00071816	4.9549	0.002739	552.7884746599374	41.307	0.50954	41.307	41.047	41.557	0					30	12	4	0	0	0	0.4966	1	16350	16350		32.812	0	1	607300			50340	10257	33218	33359	50988	50988					0.013485376093285595
YIPLYPSQI	9	Unmodified	_YIPLYPSQI_					0	0	0			REV__ENST00000479213.1_1_6:131914123-131917288:-|nuORF	REV__ENST00000479213.1_1_6:131914123-131917288:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7997436523438	2	547.30005	1092.58555	3.8345	0.0020986	-2.9281	-0.0016026	0.90639	0.00049607	547.7990124572632	40.621	0.27803	40.621	40.424	40.702	0					9	6	2	0	0	0	0.28897	1	16166	16166		35.618	1.4457	1	161910	+		50341	13998	33219	33360	50989	50989					0.04295797762847542
YIQCGEEL	8	Unmodified	_YIQCGEEL_					0	0	0			REV__ENST00000495458.5_1_5:176729278-176730108:-|nuORF	REV__ENST00000495458.5_1_5:176729278-176730108:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.71533203125	2	477.715493	953.416433	-0.64505	-0.00030815	-0.62193	-0.00029711	-1.267	-0.00060526	477.7156483854257	24.484	0.21505	24.484	24.38	24.595	0					9	4	3	0	0	0	0.68754	1	8470	8470		35.201	2.3883	1	131460	+		50342	16303	33220	33361	50990	50990					-0.06213846862158334
YIQEARNCL	9	Unmodified	_YIQEARNCL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1;ENST00000461859.1_1_1:151535003-151537177:+|nuORF;TUFT1|p.V176Cfs*59|1|0.36|ENSG00000143367|chr1:151569698-151569707|GACGGTGCAG/-|frameshift_variant	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	555.2745971679688	2	555.274041	1108.53353	1.3076	0.00072607	-1.5505	-0.00086095	-0.24291	-0.00013488	555.2734475150259	30.877	0.099707	30.877	30.847	30.947	0					5	4	2	0	0	0	0.41113	1	9882	9882		40.778	8.8233	1	39157			50343	4543	33221	33362	50991	50991					-0.016396889225688938
YIQEARNCL	9	Unmodified	_YIQEARNCL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1;ENST00000461859.1_1_1:151535003-151537177:+|nuORF;TUFT1|p.V176Cfs*59|1|0.36|ENSG00000143367|chr1:151569698-151569707|GACGGTGCAG/-|frameshift_variant	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2742919921875	2	555.274041	1108.53353	0.58645	0.00032564	-1.2196	-0.0006772	-0.63313	-0.00035156	555.273963433112	31.117	0.17845	31.117	31.033	31.211	0					9	4	3	0	0	0	0.063171	1	11307	11307		90.601	13.827	1	179460			50344	4543	33221	33362	50992	50992					-0.016396889225688938
YIQEARNCL	9	Unmodified	_YIQEARNCL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1;ENST00000461859.1_1_1:151535003-151537177:+|nuORF;TUFT1|p.V176Cfs*59|1|0.36|ENSG00000143367|chr1:151569698-151569707|GACGGTGCAG/-|frameshift_variant	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.2741088867188	2	555.274041	1108.53353	3.5681	0.0019813	-3.9205	-0.0021769	-0.35243	-0.0001957	555.2722310846361	31.101	0.35843	31.101	30.995	31.353	0					14	7	3	0	0	0	0.048471	1	11606	11606		95.815	10.654	1	511650			50345	4543	33221	33362	50993	50993					-0.016396889225688938
YIRLLLCW	8	Carbamidomethyl (C)	_YIRLLLC(Carbamidomethyl (C))W_	YIRLLLC(1)W		YIRLLLC(66)W		0	1	0			REV__ENST00000366527.4_3_1:245017330-245017447:-|nuORF	REV__ENST00000366527.4_3_1:245017330-245017447:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.821533203125	2	568.817887	1135.62122	3.4564	0.001966	2.6346	0.0014986	6.091	0.0034647	568.8195871789437	42.167	0.32737	42.167	41.969	42.296	0					14	8	2	0	0	0	0.4434	1	16784	16784		65.897	12.961	1	160390	+		50346	18582	33222	33363	50994	50994	660				0.05883556738876905
YIRNVLEQ	8	Unmodified	_YIRNVLEQ_					0	0	0			REV__CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant	REV__CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	517.7841186523438	2	517.785099	1033.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.895	1	28.895	28.395	29.395	0								0	0	0	1.7419	1	9066	9066		33.516	15.191	1		+		50347	12330	33223	33364	50995	50995					0.040208588175119075
YISEETRVL	9	Unmodified	_YISEETRVL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	555.2959594726562	2	555.295496	1108.57644	0.58957	0.00032738	-1.2881	-0.0007153	-0.69858	-0.00038792	555.2950069550812	33.135	0.29322	33.135	33.046	33.339	0					13	8	2	0	0	0	0.26904	1	12238	12238		53.351	9.2347	1	152990			50348	3238	33224	33365	50996	50996					0.026494044065202615
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;CLPTM1|p.F118L|1|0.05|ENSG00000104853|chr19:44974483-44974483|C/A|missense_variant	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	531.2383422851562	2	531.237981	1060.46141	2.4367	0.0012945	-1.3733	-0.00072955	1.0634	0.00056494	531.2371739122227	29.326	0.25081	29.326	29.245	29.496	0					13	6	3	0	0	0	0.34985	1	10471	10471		76.847	23.495	1	499290			50349	2310	33225	33366	50997	50997					-0.0664028000462622
YISFNDLNK	9	Unmodified	_YISFNDLNK_					0	0	0			REV__tr|U7SN89|U7SN89_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01706PE=4SV=1	REV__tr|U7SN89|U7SN89_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01706PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.2814331054688	2	557.282389	1112.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.011	1	14.011	13.511	14.511	0								0	0	0	0.14961	1	2898	2898		52.937	3.4007	1		+		50350	21797	33226	33367	50998	50998					-0.001548647649542545
YISNATHM	8	Unmodified	_YISNATHM_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	468.7140808105469	2	468.715827	935.417102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.324	1	44.324	43.824	44.824	0								0	0	0	1.7419	1	17759	17759		33.516	1.5607	1				50351	1182	33227	33368	50999	50999					-0.053190074224630735
YISTEHGKPF	10	Unmodified	_YISTEHGKPF_					0	0	0			REV__nc|ENSG00000134686|Q8IXK0-3|PHC2	REV__nc|ENSG00000134686|Q8IXK0-3|PHC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	393.867431640625	3	393.532868	1177.57677	-1.2555	-0.00049408	1.0697	0.00042096	-0.18578	-7.3111E-05	393.8677266239556	27.99	0.14957	27.99	27.903	28.052	0					10	5	2	0	0	0	0.68774	1	8984	8984		23.523	0.94304	1	118490	+		50352	19661	33228	33369	51000	51000					-0.004911758736170668
YIVFLLGFG	9	Unmodified	_YIVFLLGFG_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	514.794189453125	2	514.794404	1027.57425	-1.5884	-0.00081769	1.5637	0.00080501	-0.024643	-1.2686E-05	514.7952666584786	33.739	0.17882	33.739	33.628	33.807	0					10	5	2	0	0	0	0.52436	1	11865	11865		29.842	0	1	245000			50353	6025	33229	33370	51001	51001					0.06157020459386331
YIVHCVFY	8	Unmodified	_YIVHCVFY_					0	0	0			REV__ENST00000343217.6_1_2:241503143-241503332:+|nuORF	REV__ENST00000343217.6_1_2:241503143-241503332:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.2564086914062	2	522.254588	1042.49462	0.42048	0.0002196	3.205	0.0016739	3.6255	0.0018934	522.2560637406013	34.061	0.16096	34.061	33.957	34.118	0					6	3	2	0	0	0	0.63381	1	13025	13025		43.626	6.4669	1	175720	+		50354	18465	33230	33371	51002	51002					-0.02492369486253665
YIVSNSANL	9	Unmodified	_YIVSNSANL_					0	0	0		ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;nc|ENSG00000105483|Q9Y2G2-3|CARD8	ENST00000522773.5_1_19:48714969-48736545:-|nuORF	ENST00000522773.5_1_19:48714969-48736545:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	490.755859375	2	490.756007	979.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.589	1	37.589	37.089	38.089	0								0	0	0	0.29774	1	14261	14261		35.618	3.6634	1				50355	2362	33231	33372	51003	51003					0.006891771722393969
YIVVAKMKM	9	2 Oxidation (M)	_YIVVAKM(Oxidation (M))KM(Oxidation (M))_		YIVVAKM(1)KM(1)		YIVVAKM(41)KM(41)	0	0	2			REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1	REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	557.8013305664062	2	557.803588	1113.59262	-0.88651	-0.0004945	-2.1256	-0.0011857	-3.0121	-0.0016802	557.8018571097438	45.294	0.088051	45.294	45.259	45.347	0					9	5	2	0	0	0	0.41354	1	15437	15437		40.573	6.4001	1	61000	+		50356	22152	33232	33373	51004	51004		801;802			0.04037071047423524
YIWEDYRHSWR	11	Unmodified	_YIWEDYRHSWR_					0	0	0			REV__PHF20L1-CHMP1A|1|fusion	REV__PHF20L1-CHMP1A|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.5900268554688	3	537.588147	1609.74261	1.9007	0.0010218	0.19802	0.00010645	2.0987	0.0011282	537.5882383080502	17.918	0.3309	17.918	17.828	18.159	0					18	7	5	0	0	0	0.7887	1	5135	5135		15.921	10.222	1	2738900	+		50357	14544	33233	33374	51005	51005					-0.037871493649390686
YIWEDYRHSWR	11	Unmodified	_YIWEDYRHSWR_					0	0	0			REV__PHF20L1-CHMP1A|1|fusion	REV__PHF20L1-CHMP1A|1|fusion	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	806.3814086914062	2	805.878582	1609.74261	1.4098	0.0011361	-0.47948	-0.0003864	0.93031	0.00074971	805.8785209861737	17.686	0.14265	17.686	17.549	17.691	0					5	4	2	0	0	0	0.84276	1	4473	4473		5.9211	0.36328	1	86436	+		50358	14544	33233	33374	51006	51006					-0.037871493649390686
YIYAIVFY	8	Unmodified	_YIYAIVFY_					0	0	0			REV__GPR180|p.C186Y|1|0.2|ENSG00000152749|chr13:94619201-94619201|G/A|missense_variant	REV__GPR180|p.C186Y|1|0.2|ENSG00000152749|chr13:94619201-94619201|G/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2798461914062	2	526.278586	1050.54262	1.7658	0.00092931	1.4235	0.00074914	3.1893	0.0016784	526.2798175786551	36.02	0.37064	36.02	35.921	36.292	0					24	11	3	0	0	0	0.42924	1	14011	14011		67.327	12.551	1	250070	+		50359	20700	33234	33375	51007	51007					0.01937027705434957
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	593.8040161132812	2	593.803154	1185.59175	1.5355	0.00091181	-0.72896	-0.00043286	0.80659	0.00047895	593.8027145539087	36.053	0.23204	36.053	35.956	36.188	0					26	10	4	0	0	0	0.41384	1	11801	11801		54.722	19.104	1	260250			50360	3049	33235	33376	51008	51008					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	593.8027954101562	2	593.803154	1185.59175	0.83141	0.00049369	-0.40957	-0.00024321	0.42183	0.00025048	593.8028412609051	36.287	0.43629	36.287	36.172	36.608	0					35	12	4	0	0	0	0.030824	1	13654	13654		117.53	62.749	1	2620800			50361	3049	33235	33376	51009	51009					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	593.8031616210938	2	593.803154	1185.59175	1.5157	0.00090003	-1.1565	-0.00068673	0.35922	0.00021331	593.8023364594006	36.251	0.48955	36.251	36.019	36.509	0					37	14	4	0	0	0	0.010724	1	14110	14110		140.11	75.905	1	2907500			50362	3049	33235	33376	51010	51010					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	593.8045654296875	2	593.803154	1185.59175	0.50414	0.00029936	0.36859	0.00021887	0.87272	0.00051823	593.8032442140662	36.07	0.32104	36.07	35.98	36.301	0					28	11	4	0	0	0	0.41384	1	12872	12872		54.722	12.326	1	541580			50363	3049	33235	33376	51011	51011					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.8030395507812	2	593.803154	1185.59175	0.076882	4.5653E-05	0.080542	4.7826E-05	0.15742	9.3479E-05	593.8030792938008	36.219	0.21362	36.219	36.132	36.346	0					10	4	3	0	0	0	0.1998	1	14051	14051		79.489	38.711	1	252590			50364	3049	33235	33376	51012	51012					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.80322265625	2	593.803154	1185.59175	1.5563	0.00092416	-1.0578	-0.00062813	0.49853	0.00029603	593.8024084927574	36.225	0.7136	36.225	36.064	36.778	0					36	14	5	0	0	0	0.0054485	1	14042	14042		164.46	92.578	1	5876600			50365	3049	33235	33376	51013	51013					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	ENSG00000117620|ENST00000533028|SLC35A3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	593.8031616210938	2	593.803154	1185.59175	3.1733	0.0018843	-2.1833	-0.0012964	0.98999	0.00058786	593.8014477738328	36.209	0.46309	36.209	35.948	36.411	0					21	9	3	0	0	0	0.092915	1	14060	14060		96.665	41.889	1	2398400			50366	3049	33235	33376	51014	51014					0.006382712036838711
YIYRAVGRV	9	Unmodified	_YIYRAVGRV_					0	0	0			REV__nc|ENSG00000232629|P05538-2|HLA-DQB2	REV__nc|ENSG00000232629|P05538-2|HLA-DQB2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	548.8151245117188	2	548.816733	1095.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.014	1	12.014	11.514	12.514	0								0	0	0	0.37233	1	2456	2456		12.207	8.7968	1		+		50367	17649	33236	33377	51015	51015					0.07492844325406622
YKAKAQEYDSD	11	Unmodified	_YKAKAQEYDSD_					0	0	0			REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	659.3071899414062	2	659.301507	1316.58846	2.6958	0.0017774	4.083	0.0026919	6.7788	0.0044693	659.3039490727326	25.693	0.55157	25.693	25.582	26.134	0					17	9	3	0	0	0	0.44903	1	9043	9043		47.96	1.9873	1	795640	+		50368	14999	33237	33378	51016	51016					-0.057170236409547215
YKDPVCLAK	9	Unmodified	_YKDPVCLAK_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	518.7783203125	2	518.778428	1035.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.955	1	50.955	50.455	51.455	0								0	0	0	0.23445	1	19016	19016		45.972	1.4412	1			+	50369	622	33238	33379	51017	51017					0.025952847139024016
YKEELQTK	8	Unmodified	_YKEELQTK_					0	0	0		nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10	nc|ENSG00000105793|A4D1E9-2|GTPBP10	nc|ENSG00000105793|A4D1E9-2|GTPBP10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.7770385742188	2	519.776939	1037.53933	0.99494	0.00051715	-0.60587	-0.00031491	0.38908	0.00020223	519.7765328976836	26.827	0.29215	26.827	26.734	27.026	0					18	7	3	0	0	0	0.3961	1	8681	8681		71.296	0	1	2134000			50370	2397	33239	33380	51018	51018					0.022057328607388627
YKEKARVI	8	Unmodified	_YKEKARVI_					0	0	0		ENST00000421824.1_1_12:6993036-6993658:+|nuORF;ENST00000412023.5_1_12:6993487-6993658:+|nuORF	ENST00000421824.1_1_12:6993036-6993658:+|nuORF	ENST00000421824.1_1_12:6993036-6993658:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	503.8062438964844	2	503.805834	1005.59712	0.62888	0.00031683	-0.82805	-0.00041717	-0.19917	-0.00010034	503.8057408282522	26.061	0.18478	26.061	25.969	26.154	0					6	4	2	0	0	0	0.66372	1	8954	8954		38.806	0	1	43438			50371	9313	33240	33381	51019	51019					0.09454039576849027
YKEKFDEVL	9	Unmodified	_YKEKFDEVL_					0	0	0			REV__KRT3|p.K288E|1|0.46|ENSG00000186442|chr12:52794115-52794115|T/C|missense_variant	REV__KRT3|p.K288E|1|0.46|ENSG00000186442|chr12:52794115-52794115|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	390.87310791015625	3	390.87289	1169.59684	0.43591	0.00017039	-0.24453	-9.5581E-05	0.19138	7.4806E-05	390.87285454937984	16.887	0.26153	16.887	16.785	17.047	0					11	5	3	0	0	0	0.33044	1	4907	4907		47.657	3.5405	1	575010	+		50372	20798	33241	33382	51020	51020					0.01882575066338177
YKGLGRAKER	10	Unmodified	_YKGLGRAKER_					0	0	0			REV__ENST00000422797.5_1_2:109288812-109289630:+|nuORF	REV__ENST00000422797.5_1_2:109288812-109289630:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.343505859375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.329	1	52.329	51.829	52.829	0								0	0	0	0.39665	1	20342	20342		31.53	2.3803	1		+		50373	16334	33242	33383	51021	51021					0.09147016757128767
YKGSPNANEPP	11	Unmodified	_YKGSPNANEPP_					0	0	0		nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000503467.1_1_4:17587853-17609209:+|nuORF	nc|ENSG00000002549|P28838-2|LAP3	nc|ENSG00000002549|P28838-2|LAP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	587.7825927734375	2	587.280377	1172.5462	-0.3641	-0.00021383	-0.17205	-0.00010104	-0.53615	-0.00031487	587.2803771463393	34.359	0.40776	34.359	34.092	34.499	0					37	18	3	0	0	0	0.67178	1	11529	11529		30.318	1.1477	1	165360			50374	927	33243	33384	51022	51022					-0.033169542586847456
YKHRNIEPN	9	Unmodified	_YKHRNIEPN_					0	0	0			REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|10|2|sense	REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.868897465743888|0.2278259033593264|3.04|481.0|10|2|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	585.8058471679688	2	585.804354	1169.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.642	1	16.642	16.142	17.142	0								0	0	0	0.18645	1	3826	3826		37.159	0	1		+		50375	20810	33244	33385	51023	51023					0.01614164452030309
YKKDFEQF	8	Unmodified	_YKKDFEQF_					0	0	0			REV__ENST00000552316.1_1_12:120935833-120936010:+|nuORF	REV__ENST00000552316.1_1_12:120935833-120936010:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	552.7711181640625	2	552.771657	1103.52876	0.62121	0.00034339	-0.72613	-0.00040139	-0.10492	-5.7996E-05	552.771084121423	40.239	0.25462	40.239	40.126	40.381	0					25	11	3	0	0	0	0.59714	1	15316	15316		49.536	0	1	147990	+		50376	20212	33245	33386	51024	51024					-0.018862497936879663
YKKEKIQA	8	Unmodified	_YKKEKIQA_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	336.5341491699219	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.653	1	39.653	39.153	40.153	0								0	0	0	1.7419	1	15686	15686		25.574	0	1		+		50377	21669	33246	33387	51025	51025					0.07810333339944009
YKLFKETDEK	10	Unmodified	_YKLFKETDEK_					0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.23284912109375	3	434.230966	1299.67107	0.96173	0.00041761	3.079	0.001337	4.0407	0.0017546	434.23260690982136	16.148	0.1002	16.148	16.109	16.21	0					5	4	2	0	0	0	0.5276	1	3634	3634		42.338	8.4164	1	54916	+		50378	21906	33247	33388	51026	51026					0.03321918157826076
YKLSHSLVV	9	Unmodified	_YKLSHSLVV_					0	0	0		ENST00000560958.1_1_15:83395247-83395832:-|nuORF	ENST00000560958.1_1_15:83395247-83395832:-|nuORF	ENST00000560958.1_1_15:83395247-83395832:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.30419921875	2	523.305667	1044.59678	0.48885	0.00025582	-4.4803	-0.0023446	-3.9915	-0.0020888	523.3041156114449	22.28	0.2831	22.28	22.228	22.511	0					12	8	3	0	0	0	0.41113	1	6532	6532		40.778	4.3314	1	143000			50379	10698	33248	33389	51027	51027					0.0762661985700106
YKNIILKAK	9	Unmodified	_YKNIILKAK_					0	0	0		tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1	tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1	tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	364.23834228515625	3	364.237615	1089.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.878	1	13.878	13.378	14.378	0								0	0	0	0.34845	1	3479	3479		25.574	1.0549	1				50380	22971	33249	33390	51028	51028					0.14975758679133833
YKPDESDAN	9	Unmodified	_YKPDESDAN_					0	0	0			REV__ENST00000460021.1_1_7:102994369-103002536:+|nuORF	REV__ENST00000460021.1_1_7:102994369-103002536:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.72216796875	2	519.722361	1037.43017	-0.27949	-0.00014525	0.31214	0.00016223	0.032656	1.6972E-05	519.722298071382	15.856	0.15939	15.856	15.803	15.962	0					7	3	3	0	0	0	0.50858	1	4429	4429		31.53	4.7337	1	537110	+		50381	15776	33250	33391	51029	51029					-0.08704897829375113
YKQNSAQI	8	Unmodified	_YKQNSAQI_					0	0	0		ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant;ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ZMYM6|p.L686Ifs*41|1|0.03|ENSG00000163867|chr1:34992324-34992325|-/GAAAGGAAAAGAAAAT|frameshift_variant;ZMYM6|p.N724Mfs*15|1|0.42|ENSG00000163867|chr1:34988911-34988911|T/-|frameshift_variant;ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant;ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant;ZMYM6|p.T295Nfs*8|1|0.41|ENSG00000163867|chr1:35012493-35012494|-/T|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	476.2483215332031	2	476.248349	950.482145	-2.7414	-0.0013056	-1.9541	-0.00093064	-4.6955	-0.0022362	476.2473713541814	26.117	0.56863	26.117	25.72	26.289	0					16	11	2	0	0	0	0.49216	1	8372	8372		60.972	11.53	1	143020			50382	5614	33251	33392	51030	51030					0.004923103750343216
YKRETVVL	8	Unmodified	_YKRETVVL_					0	0	0			REV__ENSG00000180875|ENST00000318160|GREM2	REV__ENSG00000180875|ENST00000318160|GREM2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5346984863281	3	336.53432	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.781	1	53.781	53.281	54.281	0								0	0	0	1.7419	1	15841	15841		17.365	8.1821	1		+		50383	16824	33252	33393	51031	51031					0.07810333339955378
YKRYVAVG	8	Unmodified	_YKRYVAVG_					0	0	0			REV__nc|ENSG00000070159|P26045-3|PTPN3	REV__nc|ENSG00000070159|P26045-3|PTPN3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	478.27099609375	2	478.271627	954.528701	-1.4571	-0.00069688	0.75578	0.00036147	-0.7013	-0.00033541	478.27191898405056	32.523	0.51402	32.523	32.231	32.745	0					40	21	2	0	0	0	0.75243	1	10764	10764		26.796	0	1	155550	+		50384	13169	33253	33394	51032	51032					0.0496179499699565
YKSTDQKAF	9	Unmodified	_YKSTDQKAF_					0	0	0		ENST00000570400.1_1_17:2541482-2541527:+|nuORF	ENST00000570400.1_1_17:2541482-2541527:+|nuORF	ENST00000570400.1_1_17:2541482-2541527:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.2750244140625	2	544.274564	1086.53457	0.36666	0.00019957	0.53086	0.00028893	0.89753	0.0004885	544.2748419815086	32.965	0.71854	32.965	32.737	33.456	0					53	19	4	0	0	0	0.35021	1	12089	12089		45.972	3.108	1	2968100			50385	10796	33254	33395	51033	51033					-0.005231512820046191
YKTRHTGIN	9	Unmodified	_YKTRHTGIN_					0	0	0		nc|ENSG00000256771|O75346-2|ZNF253;ENSG00000256771|ENST00000589717|ZNF253	nc|ENSG00000256771|O75346-2|ZNF253	nc|ENSG00000256771|O75346-2|ZNF253	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.2958984375	2	545.293622	1088.57269	3.7311	0.0020345	0.70314	0.00038342	4.4342	0.0024179	545.2938919364656	18.694	1.1343	18.694	18.489	19.623	0					40	23	3	0	0	0	0.21263	1	5632	5632		44.117	0	1	3000900			50386	8028	33255	33396	51034	51034					0.031947794233246896
YKYIGMHTGK	10	Unmodified	_YKYIGMHTGK_					0	0	0		tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	599.3090209960938	2	599.307884	1196.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.879	1	10.879	10.379	11.379	0								0	0	0	0.4201	1	2120	2120		0.99688	0	1				50387	22795	33256	33397	51035	51035					0.010777610082413958
YLAALAKAC	9	Carbamidomethyl (C)	_YLAALAKAC(Carbamidomethyl (C))_	YLAALAKAC(1)		YLAALAKAC(42)		0	1	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;FAM120A|p.V551Sfs*6|1|0.21|ENSG00000048828|chr9:93529491-93529491|C/-|frameshift_variant;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.76495361328125	2	490.76532	979.516088	0.59177	0.00029042	0.020648	1.0133E-05	0.61242	0.00030055	490.7651295387147	44.717	0.15757	44.717	44.661	44.819	0					15	9	2	0	0	0	0.39123	1	17378	17378		42.474	13.325	1	76610			50388	1234	33257	33398	51036	51036	44				0.025510155424399272
YLALFFFLL	9	Unmodified	_YLALFFFLL_					0	0	0		ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	382.89227294921875	3	382.891445	1145.6525	3.2277	0.0012359	-0.64951	-0.00024869	2.5782	0.00098718	382.8911442400114	37.386	0.74583	37.386	36.994	37.739	0					30	15	3	0	0	0	0.45358	1	14579	14579		37.159	5.6293	1	436150			50389	5657	33258	33399	51037	51037					0.0855045304460873
YLAMNKRGR	9	Unmodified	_YLAMNKRGR_					0	0	0		ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	554.8069458007812	2	554.805842	1107.59713	1.6459	0.00091313	-1.6098	-0.00089311	0.036081	2.0018E-05	554.8044573939919	41.452	0.20618	41.452	41.363	41.569	0					12	8	2	0	0	0	0.30268	1	16290	16290		50.025	0.58299	1	44299			50390	7169	33259	33400	51038	51038					0.04763716305183152
YLANFYIF	8	Unmodified	_YLANFYIF_					0	0	0		nc|nan|Q6UX73|C16orf89	nc|nan|Q6UX73|C16orf89	nc|nan|Q6UX73|C16orf89	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.766357421875	2	525.768386	1049.52222	-1.2354	-0.00064951	-1.7015	-0.0008946	-2.9369	-0.0015441	525.7670542578464	36.532	0.12949	36.532	36.43	36.56	0					8	6	2	0	0	0	0.28675	1	13081	13081		86.935	15.639	1	73348			50391	11838	33260	33401	51039	51039					-0.0005614295439499983
YLAQQDPAL	9	Unmodified	_YLAQQDPAL_					0	0	0			REV__ENST00000530879.1_1_8:146029013-146029199:+|nuORF	REV__ENST00000530879.1_1_8:146029013-146029199:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	509.7637634277344	2	509.763832	1017.51311	0.22718	0.00011581	-0.10855	-5.5335E-05	0.11863	6.0472E-05	509.76376720256377	28.841	0.31564	28.841	28.71	29.026	0					11	7	2	0	0	0	0.19952	1	9617	9617		54.776	1.6874	1	190470	+		50392	17328	33261	33402	51040	51040					0.0050546368928507945
YLAQSKEMQG	10	Unmodified	_YLAQSKEMQG_					0	0	0			REV__SPHKAP|p.P530Qfs*32|1|0.43|ENSG00000153820|chr2:228019265-228019265|G/-|frameshift_variant	REV__SPHKAP|p.P530Qfs*32|1|0.43|ENSG00000153820|chr2:228019265-228019265|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	577.78125	2	577.779156	1153.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.361	1	16.361	15.861	16.861	0								0	0	0	0.4044	1	3907	3907		29.17	5.6474	1		+		50393	21599	33262	33403	51041	51041					-0.026871259879726495
YLCNVRHIF	9	Unmodified	_YLCNVRHIF_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	582.8050537109375	2	582.802768	1163.59098	1.3839	0.00080655	1.9629	0.001144	3.3468	0.0019505	582.8041330420044	33.145	0.44134	33.145	33.052	33.493	0					20	10	3	0	0	0	0.37197	1	12729	12729		20.482	0	1	834530			50394	1142	33263	33404	51042	51042					0.015731980736745754
YLCTLLVAQ	9	Unmodified	_YLCTLLVAQ_					0	0	0			REV__CDK5R1|p.E221K|1|0.41|ENSG00000176749|chr17:32488281-32488281|G/A|missense_variant	REV__CDK5R1|p.E221K|1|0.41|ENSG00000176749|chr17:32488281-32488281|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	512.2802734375	2	512.280803	1022.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.645	1	24.645	24.145	25.145	0								0	0	0	0.24724	1	7717	7717		44.117	1.6423	1		+		50395	12407	33264	33405	51043	51043					0.03668168856677312
YLDELNEEI	9	Unmodified	_YLDELNEEI_					0	0	0		tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	379.8487854003906	3	379.848521	1136.52373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.849	1	23.849	23.349	24.349	0								0	0	0	0.27939	1	7346	7346		39.253	8.9351	1				50396	22877	33265	33406	51044	51044					-0.03906598446951648
YLDKYAMFMK	10	Unmodified	_YLDKYAMFMK_					0	0	0			REV__ENSG00000147647|ENST00000351513|DPYS	REV__ENSG00000147647|ENST00000351513|DPYS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	437.21368408203125	3	437.215494	1308.62465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.487	1	14.487	13.987	14.987	0								0	0	0	0.4201	1	3144	3144		20.03	0.7678	1		+		50397	15359	33266	33407	51045	51045					-0.01731561269480153
YLDLSSNKLR	10	Unmodified	_YLDLSSNKLR_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L;ENST00000506166.1_1_4:78663390-78740391:-|nuORF	nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	403.55914306640625	3	403.559305	1207.65609	-0.11763	-4.7469E-05	-0.28284	-0.00011414	-0.40046	-0.00016161	403.55915302549937	20.778	0.24293	20.778	20.599	20.842	0					14	5	3	0	0	0	0.64178	1	5884	5884		20.837	0	1	292030			50398	4287	33267	33408	51046	51046					0.060564710805238064
YLEATFVYL	9	Unmodified	_YLEATFVYL_					0	0	0			REV__SLC22A4|p.V463Gfs*33|1|0.27|ENSG00000197208|chr5:132335938-132335939|-/G|frameshift_variant	REV__SLC22A4|p.V463Gfs*33|1|0.27|ENSG00000197208|chr5:132335938-132335939|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.7913818359375	2	559.792058	1117.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.325	1	13.325	12.825	13.825	0								0	0	0	0.34845	1	3065	3065		12.207	8.2216	1		+		50399	17319	33268	33409	51047	51047					0.015480915259331596
YLEHISWPLVR	11	Unmodified	_YLEHISWPLVR_					0	0	0			REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	706.8884887695312	2	706.887887	1411.76122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.476	1	33.476	32.976	33.976	0								0	0	0	0.45674	1	10889	10889		18.262	0.79408	1		+		50400	16231	33269	33410	51048	51048					0.07181012276919319
YLEHISWPLVR	11	Unmodified	_YLEHISWPLVR_					0	0	0			REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	706.8896484375	2	706.887887	1411.76122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.25	1	34.25	33.75	34.75	0								0	0	0	0.4303	1	11191	11191		30.318	4.2543	1		+		50401	16231	33269	33410	51049	51049					0.07181012276919319
YLEIADEV	8	Unmodified	_YLEIADEV_					0	0	0			REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF	REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	476.2374267578125	2	476.237116	950.459678	0.35593	0.00016951	0.5253	0.00025017	0.88124	0.00041968	476.23738836975684	36.943	0.89569	36.943	36.784	37.68	0					61	25	4	0	0	0	0.59411	1	13946	13946		50.025	2.1089	1	2641800	+		50402	12328	33270	33411	51050	51050					-0.01753333813246627
YLEQDLLASD	10	Unmodified	_YLEQDLLASD_					0	0	0			REV__PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant	REV__PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	583.7855224609375	2	583.782418	1165.55028	-0.23092	-0.00013481	3.7742	0.0022033	3.5433	0.0020685	583.7851901403757	28.04	0.092207	28.04	27.987	28.079	0					5	3	2	0	0	0	0.38194	1	9002	9002		58.23	1.7961	1	56705	+		50403	15578	33271	33412	51051	51051					-0.0258690955563452
YLFRLPLE	8	Unmodified	_YLFRLPLE_					0	0	0			REV__nc|ENSG00000175746|Q8N8G6|LINC02915	REV__nc|ENSG00000175746|Q8N8G6|LINC02915	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.804931640625	2	525.80276	1049.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.649	1	27.649	27.149	28.149	0								0	0	0	1.7419	1	9073	9073		42.474	8.3019	1		+		50404	21126	33272	33413	51052	51052					0.06815521345333764
YLGHLVKTS	9	Unmodified	_YLGHLVKTS_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	509.2916259765625	2	509.290017	1016.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.128	1	32.128	31.628	32.628	0								0	0	0	0.28996	1	12182	12182		37.159	3.6435	1		+		50405	17441	33273	33414	51053	51053					0.05786046822890967
YLGLVAHKL	9	Unmodified	_YLGLVAHKL_					0	0	0			REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	507.3160400390625	2	507.310752	1012.60695	1.2903	0.00065458	2.6516	0.0013452	3.9419	0.0019998	507.3123991932789	43.842	0.68983	43.842	43.551	44.241	0					45	24	4	0	0	0	0.41113	1	17509	17509		25.45	0	1	550350	+		50406	16240	33274	33415	51054	51054					0.10115227582218722
YLIKWLPQ	8	Unmodified	_YLIKWLPQ_					0	0	0			REV__ENST00000577191.5_1_17:7125289-7125622:+|nuORF	REV__ENST00000577191.5_1_17:7125289-7125622:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.8134765625	2	530.813128	1059.6117	0.28735	0.00015253	0.070876	3.7622E-05	0.35823	0.00019015	530.8133476858978	23.987	0.16455	23.987	23.881	24.045	0					5	3	2	0	0	0	0.79882	1	8349	8349		19.36	0.25645	1	188070	+		50407	20424	33275	33416	51055	51055					0.0842811172499296
YLISSLVTAS	10	Unmodified	_YLISSLVTAS_					0	0	0			REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.294189453125	2	527.294965	1052.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.966	1	29.966	29.466	30.466	0								0	0	0	0.40862	1	9800	9800		27.882	1.0861	1		+		50408	19080	33276	33417	51056	51056					0.05119190037612498
YLIVLNCQAI	10	Unmodified	_YLIVLNCQAI_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	575.3179931640625	2	575.32046	1148.62637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.796	1	43.796	43.296	44.296	0								0	0	0	0.38797	1	17540	17540		34.173	6.2903	1		+		50409	13848	33277	33418	51057	51057					0.05799815810837572
YLKCLHAM	8	Unmodified	_YLKCLHAM_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.74822998046875	2	489.748616	977.482679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.688	1	31.688	31.188	32.188	0								0	0	0	1.7419	1	11874	11874		41.208	0.4302	1				50410	4772	33278	33419	51058	51058					-0.0069630950110877166
YLKEGKEAI	9	Unmodified	_YLKEGKEAI_					0	0	0			REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.8661804199219	3	350.865847	1049.57571	0.50892	0.00017856	-0.93408	-0.00032774	-0.42516	-0.00014917	350.86567808785514	28.507	0.41352	28.507	28.348	28.762	0					12	8	2	0	0	0	0.51817	1	10440	10440		37.812	2.6595	1	229000	+		50411	14377	33279	33420	51059	51059					0.052906097574805244
YLKEKLEQQ	9	Unmodified	_YLKEKLEQQ_					0	0	0			REV__ENST00000467709.6_1_8:25227083-25246387:+|nuORF	REV__ENST00000467709.6_1_8:25227083-25246387:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	393.5515441894531	3	393.552039	1177.63429	0.1201	4.7265E-05	-1.1498	-0.0004525	-1.0297	-0.00040524	393.5515343802547	20.761	0.2684	20.761	20.529	20.798	0					6	5	2	0	0	0	0.61124	1	6782	6782		17.468	1.4612	1	124660	+		50412	15348	33280	33421	51060	51060					0.05257666331931432
YLKMYGDVM	9	2 Oxidation (M)	_YLKM(Oxidation (M))YGDVM(Oxidation (M))_		YLKM(1)YGDVM(1)		YLKM(66)YGDVM(66)	0	0	2			REV__ENSG00000115593|ENST00000419482|SMYD1	REV__ENSG00000115593|ENST00000419482|SMYD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	576.2598266601562	2	576.25921	1150.50387	1.5641	0.00090132	-0.7725	-0.00044516	0.79158	0.00045616	576.258732707852	28.254	0.25382	28.254	28.165	28.419	0					18	6	4	0	0	0	0.16524	1	9960	9960		65.803	65.803	1	1289700	+		50413	14118	33281	33422	51061	51061		533;534			-0.0653638898288591
YLKMYGDVM	9	2 Oxidation (M)	_YLKM(Oxidation (M))YGDVM(Oxidation (M))_		YLKM(1)YGDVM(1)		YLKM(91)YGDVM(91)	0	0	2			REV__ENSG00000115593|ENST00000419482|SMYD1	REV__ENSG00000115593|ENST00000419482|SMYD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	576.2595825195312	2	576.25921	1150.50387	1.6969	0.00097783	-1.0303	-0.00059372	0.66655	0.00038411	576.2585398793677	28.203	0.81759	28.203	28.042	28.86	0					39	16	5	0	0	0	0.062676	1	10199	10199		90.777	29.805	1	5598500	+		50414	14118	33281	33422	51062	51062		533;534			-0.0653638898288591
YLKPDTLPQL	10	Unmodified	_YLKPDTLPQL_					0	0	0			REV__ENST00000533277.5_1_11:66613305-66613563:+|nuORF	REV__ENST00000533277.5_1_11:66613305-66613563:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	594.3348999023438	2	594.337164	1186.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.427	1	24.427	23.927	24.927	0								0	0	0	0.39169	1	7476	7476		35.152	3.6222	1		+		50415	16526	33282	33423	51063	51063					0.07391140854383593
YLKQVLGQ	8	Unmodified	_YLKQVLGQ_					0	0	0		ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000493673.1_1_1:151372075-151372920:+|nuORF	ENST00000493673.1_1_1:151372075-151372920:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	474.77960205078125	2	474.779285	947.544017	-0.010694	-5.0775E-06	0.41456	0.00019683	0.40387	0.00019175	474.7794979892908	37.682	0.15821	37.682	37.585	37.744	0					14	9	2	0	0	0	0.7126	1	12320	12320		31.955	0	1	64768			50416	5312	33283	33424	51064	51064					0.06814661794203403
YLKQVLGQ	8	Unmodified	_YLKQVLGQ_					0	0	0		ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000493673.1_1_1:151372075-151372920:+|nuORF	ENST00000493673.1_1_1:151372075-151372920:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.7793273925781	2	474.779285	947.544017	0.31029	0.00014732	-1.9283	-0.00091553	-1.618	-0.00076821	474.7790343890815	38.013	0.33688	38.013	37.882	38.219	0					42	15	6	0	0	0	0.61938	1	14410	14410		45.952	3.4775	1	621860			50417	5312	33283	33424	51065	51065					0.06814661794203403
YLKQVLGQ	8	Unmodified	_YLKQVLGQ_					0	0	0		ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000493673.1_1_1:151372075-151372920:+|nuORF	ENST00000493673.1_1_1:151372075-151372920:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	474.7796936035156	2	474.779285	947.544017	-0.12039	-5.7158E-05	0.84938	0.00040327	0.72899	0.00034611	474.7796860094668	37.942	0.30311	37.942	37.853	38.156	0					21	10	3	0	0	0	0.54629	1	14862	14862		55.504	0	1	191830			50418	5312	33283	33424	51066	51066					0.06814661794203403
YLLIDLCVF	9	Unmodified	_YLLIDLCVF_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	REV__nc|ENSG00000143199|Q96PN6-2|ADCY10	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	549.8012084960938	2	549.798829	1097.5831	3.763	0.0020689	0.90232	0.00049609	4.6653	0.002565	549.7991980220302	40.172	0.5439	40.172	40.034	40.578	0					23	12	3	0	0	0	0.097811	1	15916	15916		79.939	11.455	1	1718200	+		50419	12081	33284	33425	51067	51067					0.038216260335275365
YLLNQLQL	8	Unmodified	_YLLNQLQL_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7922668457031	2	502.792392	1003.57023	0.98767	0.00049659	-1.5341	-0.00077135	-0.54647	-0.00027476	502.79179770125097	38.599	0.29593	38.599	38.505	38.801	0					17	10	2	0	0	0	0.32408	1	15154	15154		79.939	8.5613	1	292990	+		50420	13536	33285	33426	51068	51068					0.06858930965665877
YLLTLAAAN	9	Unmodified	_YLLTLAAAN_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;FCHSD2|p.L287Cfs*26|1|0.21|ENSG00000137478|chr11:72902607-72902607|A/-|frameshift_variant;nc|ENSG00000137478|O94868-3|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	475.27154541015625	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.427	1	42.427	41.927	42.927	0								0	0	0	0.36266	1	14828	14828		21.96	1.9631	1				50421	4169	33286	33427	51069	51069					0.05170955557275647
YLLVGAGA	8	Unmodified	_YLLVGAGA_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	382.2212829589844	2	382.221072	762.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.525	1	46.525	46.025	47.025	0								0	0	0	1.7419	1	17875	17875		33.493	2.9893	1				50422	6884	33287	33428	51070	51070					0.03687343294279799
YLMLVNDY	8	Unmodified	_YLMLVNDY_					0	0	0		ADGRG7|p.D695Y|1|0.39|ENSG00000144820|chr3:100669052-100669052|G/T|missense_variant	ADGRG7|p.D695Y|1|0.39|ENSG00000144820|chr3:100669052-100669052|G/T|missense_variant	ADGRG7|p.D695Y|1|0.39|ENSG00000144820|chr3:100669052-100669052|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7507934570312	2	515.749336	1029.48412	1.109	0.00057199	2.477	0.0012775	3.586	0.0018495	515.7502915642626	23.318	0.10575	23.318	23.267	23.373	0					4	2	2	0	0	0	0.72381	1	7108	7108		30.504	3.8107	1	63869			50423	80	33288	33429	51071	51071					-0.029443969313661
YLMPENVVE	9	Unmodified	_YLMPENVVE_					0	0	0		ENSG00000185189|ENST00000442628|NRBP2;nc|ENSG00000185189|Q9NSY0-2|NRBP2;ENST00000423469.6_1_8:144917834-144920143:-|nuORF;nc|ENSG00000185189|Q9NSY0-4|NRBP2;ENST00000529747.5_1_8:144917890-144921694:-|nuORF	ENSG00000185189|ENST00000442628|NRBP2	ENSG00000185189|ENST00000442628|NRBP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	547.264892578125	2	547.26535	1092.51615	0.33939	0.00018574	-1.3905	-0.00076095	-1.0511	-0.00057521	547.2647483439359	12.176	0.3425	12.176	12.084	12.427	0					14	8	3	0	0	0	0.37197	1	2662	2662		44.117	6.9577	1	1568600			50424	7063	33289	33430	51072	51072					-0.026410292482069053
YLNLLQIL	8	Unmodified	_YLNLLQIL_					0	0	0			REV__ENST00000490095.5_1_3:48956369-48999072:+|nuORF	REV__ENST00000490095.5_1_3:48956369-48999072:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.30401611328125	2	495.305136	988.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.211	1	47.211	46.711	47.711	0								0	0	0	1.7419	1	18063	18063		42.474	0	1		+		50425	19707	33290	33431	51073	51073					0.10096405488093296
YLPAGQSVL	9	Unmodified	_YLPAGQSVL_					0	0	0		ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	474.2633056640625	2	474.263468	946.512382	-0.4884	-0.00023163	-0.21844	-0.0001036	-0.70684	-0.00033523	474.26344110917114	42.001	0.77326	42.001	41.713	42.486	0					63	39	2	0	0	0	0.53083	1	15884	15884		29.15	2.4566	1	262430			50426	5966	33291	33432	51074	51074					0.03698669040238656
YLPAGQSVL	9	Unmodified	_YLPAGQSVL_					0	0	0		ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.26263427734375	2	474.263468	946.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.934	1	41.934	41.434	42.434	0								0	0	0	0.27939	1	14714	14714		39.253	4.1008	1				50427	5966	33291	33432	51075	51075					0.03698669040238656
YLPAGQSVL	9	Unmodified	_YLPAGQSVL_					0	0	0		ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	474.2632141113281	2	474.263468	946.512382	2.3612	0.0011198	-3.2404	-0.0015368	-0.87927	-0.00041701	474.26214658020774	41.823	0.89639	41.823	41.546	42.443	0					55	24	3	0	0	0	0.1115	2	16627	16627;16781		76.774	23.423	1	381960			50428	5966	33291	33432	51076;51077	51076					0.03698669040238656
YLPAVLPF	8	Unmodified	_YLPAVLPF_					0	0	0			REV__ENST00000394963.8_1_12:50478976-50479033:+|nuORF	REV__ENST00000394963.8_1_12:50478976-50479033:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	460.2672119140625	2	460.268022	918.521491	0.81064	0.00037311	0.42003	0.00019333	1.2307	0.00056644	460.2671294926101	36.426	0.15601	36.426	36.351	36.507	0					11	4	4	0	0	0	0.70073	1	13749	13749		33.493	0	1	78672	+		50429	18872	33292	33433	51078	51078					0.05897062396570618
YLPFTSPQQP	10	Unmodified	_YLPFTSPQQP_					0	0	0			REV__PLSCR4|p.Y143Sfs*5|1|0.07|ENSG00000114698|chr3:146200009-146200010|-/GACAATGCAG|frameshift_variant	REV__PLSCR4|p.Y143Sfs*5|1|0.07|ENSG00000114698|chr3:146200009-146200010|-/GACAATGCAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.2979736328125	2	589.298039	1176.58152	-0.43686	-0.00025744	-0.13935	-8.2117E-05	-0.57621	-0.00033956	589.2981996594656	28.955	0.82287	28.955	28.668	29.491	0					72	32	3	0	0	0	0.61187	1	9335	9335		32.812	8.2932	1	351420	+		50430	14077	33293	33434	51079	51079					0.0002970826915316138
YLPPGSRPE	9	Unmodified	_YLPPGSRPE_					0	0	0		ENST00000378169.7_1_1:5965468-6021937:-|nuORF;ENST00000478423.6_1_1:5965468-6029316:-|nuORF	ENST00000378169.7_1_1:5965468-6021937:-|nuORF	ENST00000378169.7_1_1:5965468-6021937:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	508.2821960449219	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.862	1	21.862	21.362	22.362	0								0	0	0	0.20989	1	7314	7314		42.396	13.247	1				50431	9064	33294	33435	51080	51080					0.006768834091417375
YLQLLVHP	8	Unmodified	_YLQLLVHP_					0	0	0		SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	491.7898864746094	2	491.789653	981.564752	-0.15736	-7.7388E-05	0.13166	6.475E-05	-0.025697	-1.2638E-05	491.78996528452086	26.946	0.079247	26.946	26.908	26.987	0					4	2	2	0	0	0	0.68754	1	8263	8263		35.201	9.7505	1	63910			50432	3435	33295	33436	51081	51081					0.07323252173864603
YLQLSLPHW	9	Unmodified	_YLQLSLPHW_					0	0	0			REV__ENST00000561876.1_1_16:48671141-48672401:+|nuORF	REV__ENST00000561876.1_1_16:48671141-48672401:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8115234375	2	578.811116	1155.60768	1.6484	0.00095409	-1.3718	-0.00079399	0.2766	0.0001601	578.8101522705462	39.107	0.94375	39.107	38.919	39.863	0					53	32	2	0	0	0	0.53083	1	15343	15343		29.15	2.4566	1	136810	+		50433	20300	33296	33437	51082	51082					0.03610022231282528
YLQNYTNT	8	Unmodified	_YLQNYTNT_					0	0	0		CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2400817871094	2	508.737814	1015.46108	0.92514	0.00047065	0.70893	0.00036066	1.6341	0.00083131	509.24006232237247	28.915	2.1113	28.915	28.603	30.714	0					100	52	4	0	0	0	0.67394	1	10235	10235		37.159	0	1	167140			50434	437	33297	33438	51083	51083					-0.046036997244755185
YLQQLTAL	8	Unmodified	_YLQQLTAL_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	475.2705383300781	2	475.271293	948.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.117	1	41.117	40.617	41.617	0								0	0	0	1.7419	1	16333	16333		45.952	8.7928	1		+		50435	15795	33298	33439	51084	51084					0.05170955557275647
YLQRVGAQTF	10	Unmodified	_YLQRVGAQTF_					0	0	0			REV__ENSG00000162695|ENST00000357650|SLC30A7	REV__ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	394.88018798828125	3	394.880379	1181.61931	0.57896	0.00022862	-0.51879	-0.00020486	0.060172	2.3761E-05	394.88000193731074	29.409	0.19162	29.409	29.339	29.531	0					9	6	2	0	0	0	0.59277	1	9297	9297		35.152	3.6222	1	48021	+		50436	15830	33299	33440	51085	51085					0.03576219254614443
YLRACQQDRC	10	2 Carbamidomethyl (C)	_YLRAC(Carbamidomethyl (C))QQDRC(Carbamidomethyl (C))_	YLRAC(1)QQDRC(1)		YLRAC(55)QQDRC(55)		0	2	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	685.3079223632812	2	685.30862	1368.60269	-0.85699	-0.00058731	0.58238	0.00039911	-0.27462	-0.0001882	685.3090803623985	15.526	0.37037	15.526	15.421	15.792	0					31	13	5	0	0	0	0.41335	1	3549	3549		54.776	8.8041	1	2498400			50437	11716	33300	33441	51086	51086	466;467				-0.06686972965280802
YLRFDEES	8	Unmodified	_YLRFDEES_					0	0	0			REV__ENSG00000181396|ENST00000313056|OGFOD3	REV__ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	529.7448120117188	2	529.743096	1057.47164	2.3355	0.0012372	0.82558	0.00043735	3.1611	0.0016746	529.7437763837196	30.014	1.0095	30.014	29.169	30.178	0					43	25	3	0	0	0	0.66372	1	10756	10756		38.806	1.647	1	382160	+		50438	16844	33301	33442	51087	51087					-0.05479717070033985
YLRGFIIGL	9	Unmodified	_YLRGFIIGL_					0	0	0		ENST00000330212.7_1_3:113679835-113679949:+|nuORF	ENST00000330212.7_1_3:113679835-113679949:+|nuORF	ENST00000330212.7_1_3:113679835-113679949:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	350.8815612792969	3	351.21481	1050.6226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.329	1	19.329	18.829	19.829	0								0	0	0	0.3368	1	6091	6091		27.882	0	1				50439	8668	33302	33443	51088	51088					0.09931514099275773
YLRKLCNHPA	10	Unmodified	_YLRKLCNHPA_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	405.55181884765625	3	405.553609	1213.639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.299	1	38.299	37.799	38.799	0								0	0	0	0.4201	1	15021	15021		18.262	2.2553	1				50440	1904	33303	33444	51089	51089					0.04072271993732102
YLRNLPITAH	10	Unmodified	_YLRNLPITAH_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	399.8957824707031	3	399.89614	1196.66659	0.93328	0.00037321	-0.88958	-0.00035574	0.043699	1.7475E-05	399.895848544649	31.264	0.45996	31.264	31.124	31.584	0					25	11	3	0	0	0	0.68774	1	11391	11391		23.523	0.14478	1	135230			50441	5265	33304	33445	51090	51090					0.07612498525622868
YLRPAGQPM	9	Oxidation (M)	_YLRPAGQPM(Oxidation (M))_		YLRPAGQPM(1)		YLRPAGQPM(56)	0	0	1			REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	524.7647094726562	2	524.765852	1047.51715	-1.2546	-0.00065838	-1.1011	-0.00057784	-2.3558	-0.0012362	524.7653345345624	34.528	0.47117	34.528	34.4	34.872	0					35	15	3	0	0	0	0.25109	1	12213	12213		55.504	7.5886	1	1428600	+		50442	14377	33305	33446	51091	51091		545			-0.004707700886456223
YLSEAYFR	8	Unmodified	_YLSEAYFR_					0	0	0		ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	524.7570190429688	2	524.758549	1047.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.712	1	24.712	24.212	25.212	0								0	0	0	1.7419	1	7335	7335		26.796	0	1				50443	4193	33306	33447	51092	51092					-0.019305189651504406
YLSEGLVTK	9	Unmodified	_YLSEGLVTK_					0	0	0		ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.2819519042969	2	505.281857	1008.54916	-0.77253	-0.00039035	0.77633	0.00039227	0.003799	1.9196E-06	505.28225338471964	36.426	0.29747	36.426	36.318	36.615	0					36	16	3	0	0	0	0.1424	1	12325	12325		69.628	6.0938	1	386530			50444	4462	33307	33448	51093	51093					0.045229208661680786
YLSENKVW	8	Unmodified	_YLSENKVW_					0	0	0		tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2748413085938	2	519.766374	1037.5182	1.6535	0.00085942	-0.53709	-0.00027916	1.1164	0.00058026	519.7658694705112	34.732	0.84651	34.732	34.412	35.258	0					50	23	3	0	0	0	0.72381	1	13313	13313		30.504	0	1	5680400			50445	22744	33308	33449	51094	51094					0.0009376755190260155
YLSINLHQE	9	Unmodified	_YLSINLHQE_					0	0	0		ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	558.789306640625	2	558.787838	1115.56112	3.4686	0.0019382	0.72371	0.0004044	4.1923	0.0023426	558.7880871173287	46.9	0.29501	46.9	46.827	47.122	0					23	14	2	0	0	0	0.16002	1	18733	18733		66.429	0	1	223070			50446	3746	33309	33450	51095	51095					0.007965376093352461
YLSINNEV	8	Unmodified	_YLSINNEV_					0	0	0		MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant;MAP3K5|p.F1132Wfs*8|1|0.09|ENSG00000197442|chr6:136583570-136583571|AA/-|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5	MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant	MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	476.2424621582031	2	476.242732	950.470912	-1.531	-0.00072913	1.5292	0.00072826	-0.0018198	-8.6665E-07	476.24336553256126	25.942	0.24419	25.942	25.76	26.005	0					7	4	2	0	0	0	0.5676	1	8120	8120		53.351	0.41475	1	65661			50447	7459	33310	33451	51096	51096					-0.006305117190890996
YLSLSDKI	8	Unmodified	_YLSLSDKI_					0	0	0		nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	469.76348876953125	2	469.7633	937.512048	-0.64749	-0.00030417	0.15548	7.3037E-05	-0.49202	-0.00023113	469.7630968383557	32.662	0.090073	32.662	32.579	32.669	0					5	3	2	0	0	0	0.66372	1	11373	11373		38.806	0	1	56300			50448	6096	33311	33452	51097	51097					0.0407924932038668
YLSSLSRLL	9	Unmodified	_YLSSLSRLL_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.3113403320312	2	526.310949	1050.60735	1.6272	0.00085643	-0.82347	-0.0004334	0.80377	0.00042303	526.3102898723868	37.795	0.34831	37.795	37.691	38.039	0					9	7	2	0	0	0	0.37197	1	14821	14821		44.117	6.3053	1	150310			50449	6598	33312	33453	51098	51098					0.08406602511445271
YLSSSERACLA	11	Unmodified	_YLSSSERACLA_					0	0	0		ENSG00000188816|ENST00000339992|HMX2	ENSG00000188816|ENST00000339992|HMX2	ENSG00000188816|ENST00000339992|HMX2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2911987304688	2	600.289888	1198.56522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.707	1	55.707	55.207	56.207	0								0	0	0	0.44646	1	21041	21041		26.693	1.1189	1				50450	7274	33313	33454	51099	51099					-0.026117409592416152
YLSVCNPL	8	Unmodified	_YLSVCNPL_					0	0	0		IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	454.7304992675781	2	454.730946	907.447339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.79	1	38.79	38.29	39.29	0								0	0	0	1.7419	1	15232	15232		57.811	7.7867	1				50451	7424	33314	33455	51100	51100					-0.010086487572721126
YLTDGLSRP	9	Unmodified	_YLTDGLSRP_					0	0	0			REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant	REV__TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.2696228027344	2	511.269281	1020.52401	-0.4371	-0.00022347	0.12788	6.5379E-05	-0.30922	-0.00015809	511.2692868619643	32.117	0.39829	32.117	31.827	32.225	0					17	8	3	0	0	0	0.30951	1	12147	12147		49.442	7.0454	1	174020	+		50452	17125	33315	33456	51101	51101					0.014568660635859487
YLTEKGNE	8	Unmodified	_YLTEKGNE_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97;CFAP97|p.L103Ifs*3|1|0.15|ENSG00000164323|chr4:185190890-185190891|-/T|frameshift_variant;nc|ENSG00000164323|Q9P2B7-2|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	477.23211669921875	2	477.232364	952.450176	-1.4956	-0.00071376	2.1885	0.0010444	0.69288	0.00033066	477.2327336436835	34.382	0.1415	34.382	34.285	34.427	0					8	6	2	0	0	0	0.63077	1	11598	11598		44.117	5.3107	1	34569			50453	5683	33316	33457	51102	51102					-0.027951020987529773
YLTLLMVW	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))YLTLLM(Oxidation (M))VW_		YLTLLM(1)VW		YLTLLM(55)VW	1	0	1			REV__HAS2|p.A520T|1|0.06|ENSG00000170961|chr8:121614210-121614210|C/T|missense_variant	REV__HAS2|p.A520T|1|0.06|ENSG00000170961|chr8:121614210-121614210|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	548.793212890625	2	548.791004	1095.56745	1.7596	0.00096567	0.9909	0.0005438	2.7505	0.0015095	548.7920578518552	42.087	0.37098	42.087	41.954	42.325	0					31	17	3	0	0	0	0.55361	1	16519	16519		54.765	9.7425	1	206780	+		50454	16391	33317	33458	51103	51103		623			0.023493395165132824
YLTVQNTV	8	Unmodified	_YLTVQNTV_					0	0	0		nc|ENSG00000123130|Q9Y305-3|ACOT9;nc|ENSG00000123130|Q9Y305-2|ACOT9;nc|ENSG00000123130|Q9Y305|ACOT9;ENSG00000123130|ENST00000379303|ACOT9	nc|ENSG00000123130|Q9Y305-3|ACOT9	nc|ENSG00000123130|Q9Y305-3|ACOT9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	469.2525634765625	2	469.2531	936.491647	0.62355	0.0002926	-2.6152	-0.0012272	-1.9917	-0.00093461	469.25247159117646	33.814	0.25086	33.814	33.713	33.964	0					12	6	2	0	0	0	0.5676	1	12977	12977		53.351	0	1	573330			50455	3300	33318	33459	51104	51104					0.020860786605680914
YLVKDLIA	8	Unmodified	_YLVKDLIA_					0	0	0		PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G;PIK3C2G|p.I437Yfs*5|1|0.42|ENSG00000139144|chr12:18338456-18338456|A/-|frameshift_variant	PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	467.7837219238281	2	467.784036	933.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.077	1	44.077	43.577	44.577	0								0	0	0	1.7419	1	17197	17197		60.972	2.19	1				50456	4306	33319	33460	51105	51105					0.08408430079714435
YLVMTVFPL	9	Unmodified	_YLVMTVFPL_					0	0	0			REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7990112304688	2	541.801371	1081.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.49	1	46.49	45.99	46.99	0								0	0	0	0.23459	1	18604	18604		45.952	4.5253	1		+		50457	21812	33320	33461	51106	51106					0.05065929896159105
YLYEIEKK	8	Unmodified	_YLYEIEKK_					0	0	0		nc|ENSG00000196954|P49662-5|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF	nc|ENSG00000196954|P49662-5|CASP4	nc|ENSG00000196954|P49662-5|CASP4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.301025390625	2	543.297507	1084.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.025	1	45.025	44.525	45.525	0								0	0	0	1.7419	1	18037	18037		38.806	0.99462	1				50458	10438	33321	33462	51107	51107					0.04155493900225338
YLYEPVYPK	9	Unmodified	_YLYEPVYPK_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.30517578125	2	586.305332	1170.59611	-0.22392	-0.00013129	0.19652	0.00011522	-0.0274	-1.6064E-05	586.3056663757853	12.924	0.19043	12.924	12.738	12.929	0					7	4	2	0	0	0	0.61124	1	2996	2996		15.642	2.1878	1	231300			50459	2467	33322	33463	51108	51108					0.017637804172636606
YLYGQTTTY	9	Unmodified	_YLYGQTTTY_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;nc|ENSG00000131747|P11388-2|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.2615966796875	2	555.261122	1108.50769	3.569	0.0019817	-3.4099	-0.0018934	0.15906	8.8321E-05	555.2588444348493	38.669	0.21717	38.669	38.56	38.778	0					7	4	2	0	0	0	0.15163	1	15236	15236		67.494	14.142	1	186360			50460	3738	33323	33464	51109	51109					-0.04222259893185765
YLYLFLGTT	9	Unmodified	_YLYLFLGTT_					0	0	0		OR6T1|p.F105L|1|0.08|ENSG00000181499|chr11:123943524-123943524|G/T|missense_variant	OR6T1|p.F105L|1|0.08|ENSG00000181499|chr11:123943524-123943524|G/T|missense_variant	OR6T1|p.F105L|1|0.08|ENSG00000181499|chr11:123943524-123943524|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	545.7941284179688	2	545.794601	1089.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.537	1	43.537	43.037	44.037	0								0	0	0	0.27166	1	16411	16411		40.573	0	1				50461	11883	33324	33465	51110	51110					0.03344395388558041
YLYNDCPG	8	Unmodified	_YLYNDCPG_					0	0	0		nc|ENSG00000067182|P19438-5|TNFRSF1A;nc|ENSG00000067182|P19438-4|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A	nc|ENSG00000067182|P19438-5|TNFRSF1A	nc|ENSG00000067182|P19438-5|TNFRSF1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	472.6946105957031	2	472.694561	943.374568	-0.3464	-0.00016374	1.1407	0.00053919	0.79428	0.00037545	472.695122025972	17.009	0.1498	17.009	16.923	17.073	0					9	5	2	0	0	0	0.76283	1	3971	3971		25.45	0	1	131480			50462	1403	33325	33466	51111	51111					-0.09938402550699266
YMDTSHLF	8	Unmodified	_YMDTSHLF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	507.223388671875	2	507.223485	1012.43242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.124	1	43.124	42.624	43.624	0								0	0	0	1.7419	1	16895	16895		42.474	1.6963	1				50463	3044	33326	33467	51112	51112					-0.07330140625253989
YMDYLPSY	8	Unmodified	_YMDYLPSY_					0	0	0		tr|U7T5V7|U7T5V7_FUSNUGlutaconyl-CoAdecarboxylasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00404PE=4SV=1	tr|U7T5V7|U7T5V7_FUSNUGlutaconyl-CoAdecarboxylasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00404PE=4SV=1	tr|U7T5V7|U7T5V7_FUSNUGlutaconyl-CoAdecarboxylasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00404PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	526.2276000976562	2	526.225694	1050.43683	3.4596	0.0018205	0.58299	0.00030678	4.0426	0.0021273	526.2259878350014	30.317	0.44911	30.317	30.214	30.663	0					15	9	3	0	0	0	0.68754	1	11224	11224		35.201	1.6851	1	605020			50464	23021	33327	33468	51113	51113					-0.08636676202354465
YMFLGEVAL	9	Unmodified	_YMFLGEVAL_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENST00000486510.1_1_3:51981724-51982493:+|nuORF	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7621459960938	2	521.767529	1041.5205	0.079471	4.1465E-05	-2.666	-0.001391	-2.5865	-0.0013496	521.76599724155	26.322	0.64236	26.322	25.986	26.628	0					39	15	3	0	0	0	0.41354	1	9016	9016		40.573	1.5511	1	960900			50465	1196	33328	33469	51114	51114					0.0014047996537556173
YMLKHTEIF	9	Unmodified	_YMLKHTEIF_					0	0	0			REV__UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	REV__UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	591.8095703125	2	591.30481	1180.59507	1.5094	0.00089253	-2.7315	-0.0016151	-1.2221	-0.00072262	591.3001645524276	39.918	0.43941	39.918	39.763	40.203	0					48	15	4	0	0	0	0.16524	1	15685	15685		65.803	12.866	1	682210	+		50466	15718	33329	33470	51115	51115					0.011992427767154368
YMLPQIGY	8	Unmodified	_YMLPQIGY_					0	0	0			REV__AGTPBP1|p.M780I|1|0.46|ENSG00000135049|chr9:85596445-85596445|C/T|missense_variant	REV__AGTPBP1|p.M780I|1|0.46|ENSG00000135049|chr9:85596445-85596445|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	492.748046875	2	492.746596	983.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.845	1	30.845	30.345	31.345	0								0	0	0	1.7419	1	10551	10551		54.765	12.29	1		+		50467	12113	33330	33471	51116	51116					-0.013760757231693788
YMLRNGDIL	9	Unmodified	_YMLRNGDIL_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.7902221679688	2	547.786784	1093.55902	3.8344	0.0021004	2.5166	0.0013786	6.351	0.003479	547.787936224913	28.835	0.26663	28.835	28.675	28.941	0					13	5	3	0	0	0	0.099922	1	10484	10484		79.451	10.664	1	1062400			50468	6333	33331	33472	51117	51117					0.015977855998698942
YMNRRASQM	9	Oxidation (M)	_YMNRRASQM(Oxidation (M))_		YMNRRASQM(1)		YM(-42)NRRASQM(42)	0	0	1		ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	586.7739868164062	2	586.7686	1171.52265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.824	1	34.824	34.324	35.324	0								0	0	0	0.1836	1	13453	13453		53.351	7.3792	2				50469	4904	33332	33473	51118	51118		199			-0.05625414568521592
YMQINQKNST	10	Unmodified	_YMQINQKNST_					0	0	0		ENST00000413300.1_1_3:43759941-43759998:+|nuORF	ENST00000413300.1_1_3:43759941-43759998:+|nuORF	ENST00000413300.1_1_3:43759941-43759998:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	613.7943115234375	2	613.795337	1225.57612	-0.91181	-0.00055966	-0.91667	-0.00056265	-1.8285	-0.0011223	613.7948499252575	35.978	0.28012	35.978	35.892	36.172	0					13	7	3	0	0	0	0.62235	1	13539	13539		31.53	0	1	246280			50470	9332	33333	33474	51119	51119					-0.02764338584984216
YMRRFRSQ	8	Unmodified	_YMRRFRSQ_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.R58Kfs*2|1|0.38|ENSG00000197555|chr14:71588038-71588039|CC/-|frameshift_variant;SIPA1L1|p.R58Efs*8|1|0.35|ENSG00000197555|chr14:71588038-71588038|C/-|frameshift_variant;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	572.2962036132812	2	572.295642	1142.57673	3.3826	0.0019359	-0.11649	-6.6667E-05	3.2661	0.0018692	572.2952879024871	50.158	0.20281	50.158	50.063	50.266	0					18	10	3	0	0	0	0.65276	1	19802	19802		40.573	1.3198	1	169520			50471	7471	33334	33475	51120	51120					0.011145456453959923
YMRTGYFYWYL	11	Unmodified	_YMRTGYFYWYL_					0	0	0			REV__CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant	REV__CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	781.858642578125	2	781.86048	1561.70641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.803	1	34.803	34.303	35.303	0								0	0	0	0.45674	1	11395	11395		14.137	3.8719	1		+		50472	12412	33335	33476	51121	51121					-0.05197742585983178
YMTRRIHDI	9	Unmodified	_YMTRRIHDI_					0	0	0			REV__nc|ENSG00000087303|Q14112-2|NID2	REV__nc|ENSG00000087303|Q14112-2|NID2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	402.2127685546875	3	402.213364	1203.61826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.057	1	33.057	32.557	33.557	0								0	0	0	0.37821	1	12619	12619		12.812	0	1		+		50473	13383	33336	33477	51122	51122					0.024596816140501687
YMVLFLVF	8	Unmodified	_YMVLFLVF_					0	0	0			REV__OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant	REV__OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	516.789306640625	2	516.285357	1030.55616	0.81089	0.00041865	1.5824	0.00081696	2.3933	0.0012356	516.283974751265	31.299	0.19164	31.299	31.164	31.356	0					14	5	4	0	0	0	0.63381	1	10741	10741		43.626	1.2299	1	147500	+		50474	17559	33337	33478	51123	51123					0.04210562213029334
YNAQLSDRI	9	Unmodified	_YNAQLSDRI_					0	0	0		ENST00000540493.1_12:132859905-132863044:-|nuORF;ENST00000424720.2_12:132824120-132905933:-|nuORF;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000540493.1_12:132859905-132863044:-|nuORF	ENST00000540493.1_12:132859905-132863044:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	540.2789306640625	2	540.277638	1078.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.374	1	38.374	37.874	38.874	0								0	0	0	0.25587	1	14578	14578		42.864	0	1				50475	6924	33338	33479	51124	51124					0.004593669495079666
YNAYGLITP	9	Unmodified	_YNAYGLITP_					0	0	0		ENST00000441719.5_1_2:86711112-86716803:+|nuORF;ENSG00000115548|ENST00000312912|KDM3A	ENST00000441719.5_1_2:86711112-86716803:+|nuORF	ENST00000441719.5_1_2:86711112-86716803:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	506.2626037597656	2	506.260925	1010.5073	2.9374	0.0014871	-2.5934	-0.001313	0.34401	0.00017416	506.2610833767078	38.195	0.56594	38.195	37.961	38.526	0					23	12	3	0	0	0	0.26904	1	15034	15034		53.351	3.9099	1	427130			50476	2919	33339	33480	51125	51125					0.0024636517761109644
YNEGLLQK	8	Unmodified	_YNEGLLQK_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	482.7599182128906	2	482.758549	963.502546	2.3979	0.0011576	0.52583	0.00025385	2.9237	0.0014115	482.7588667234454	28.435	0.46274	28.435	28.228	28.691	0					15	9	2	0	0	0	0.23898	1	10290	10290		116.9	12.157	1	4893400	+		50477	17020	33340	33481	51126	51126					0.019334810348595965
YNEKSKQLDQT	11	Unmodified	_YNEKSKQLDQT_					0	0	0			REV__FCHO2|p.A135D|1|0.4|ENSG00000157107|chr5:72990773-72990773|C/A|missense_variant	REV__FCHO2|p.A135D|1|0.4|ENSG00000157107|chr5:72990773-72990773|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	677.3329467773438	2	677.335881	1352.65721	-1.5642	-0.0010595	-2.677	-0.0018132	-4.2412	-0.0028727	677.334361346489	29.987	0.20697	29.987	29.835	30.042	0					6	4	2	0	0	0	0.66915	1	11172	11172		30.569	1.3988	1	105940	+		50478	20671	33341	33482	51127	51127					-0.005013593412286355
YNGLVAGLQ	9	Unmodified	_YNGLVAGLQ_					0	0	0		nc|ENSG00000175564|P55916-3|UCP3;nc|ENSG00000175564|P55916-2|UCP3;ENSG00000175567|ENST00000663595|UCP2;ENSG00000175564|ENST00000314032|UCP3	nc|ENSG00000175564|P55916-3|UCP3	nc|ENSG00000175564|P55916-3|UCP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	467.7551574707031	2	467.753267	933.491981	3.9977	0.0018699	-0.76708	-0.0003588	3.2306	0.0015111	467.7528556916866	21.901	0.14773	21.901	21.791	21.939	0					7	4	2	0	0	0	0.12239	1	6359	6359		74.255	3.4388	1	171160			50479	6566	33342	33483	51128	51128					0.022574983804247495
YNILDQIL	8	Unmodified	_YNILDQIL_					0	0	0			REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	496.2763671875	2	496.276575	990.538597	-0.034829	-1.7285E-05	0.29671	0.00014725	0.26188	0.00012996	496.2767030313455	46.354	0.3415	46.354	46.129	46.471	0					24	19	2	0	0	0	0.62915	1	17799	17799		44.377	1.981	1	58231	+		50480	15087	33343	33484	51129	51129					0.04294938211717181
YNILDQIL	8	Unmodified	_YNILDQIL_					0	0	0			REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	496.2761535644531	2	496.276575	990.538597	0.96198	0.00047741	-1.7406	-0.0008638	-0.77858	-0.00038639	496.2756415926627	46.337	0.40953	46.337	46.111	46.521	0					32	18	2	0	0	0	0.32597	1	18528	18528		79.713	10.085	1	157580	+		50481	15087	33343	33484	51130	51130					0.04294938211717181
YNISNRNKE	9	Unmodified	_YNISNRNKE_					0	0	0			REV__BMPR2|p.E672Kfs*28|1|0.3|ENSG00000204217|chr2:202555675-202555675|A/-|frameshift_variant	REV__BMPR2|p.E672Kfs*28|1|0.3|ENSG00000204217|chr2:202555675-202555675|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	569.287353515625	2	569.285994	1136.55744	3.4463	0.0019619	0.47936	0.0002729	3.9257	0.0022348	569.2863296579843	44.244	0.48637	44.244	43.917	44.403	0					32	20	2	0	0	0	0.36892	1	17640	17640		44.377	2.9506	1	131370	+		50482	12289	33344	33485	51131	51131					-0.005381321645245407
YNKGSGVP	8	Unmodified	_YNKGSGVP_					0	0	0		nc|ENSG00000211639|A0A075B6I1|IGLV4-60	nc|ENSG00000211639|A0A075B6I1|IGLV4-60	nc|ENSG00000211639|A0A075B6I1|IGLV4-60	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	411.2119140625	2	411.211235	820.407917	-1.4327	-0.00058915	1.2386	0.00050933	-0.1941	-7.9814E-05	411.21170292405844	17.416	0.16914	17.416	17.336	17.505	0					13	6	3	0	0	0	0.64144	1	4348	4348		42.396	1.8235	1	385340			50483	11731	33345	33486	51132	51132					-0.009470327164763148
YNKKEATKQ	9	Unmodified	_YNKKEATKQ_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-10|NIN	REV__nc|ENSG00000100503|Q8N4C6-10|NIN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.30419921875	2	555.301113	1108.58767	4.491	0.0024939	1.3636	0.00075719	5.8546	0.0032511	555.3018694145285	42.375	0.18913	42.375	42.305	42.495	0					26	11	3	0	0	0	0.60749	1	13961	13961		20.947	0.95016	1	166180	+		50484	13560	33346	33487	51133	51133					0.037722265006550515
YNKLEEKMK	9	Unmodified	_YNKLEEKMK_					0	0	0			REV__tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1	REV__tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	591.81103515625	2	591.812999	1181.61144	-0.52778	-0.00031234	-3.3796	-0.0020001	-3.9074	-0.0023124	591.8109590922624	39.717	0.13008	39.717	39.622	39.752	0					14	7	3	0	0	0	0.22377	1	13333	13333		58.782	2.0609	1	82349	+		50485	22221	33347	33488	51134	51134					0.027903239428269444
YNKLLNNNL	9	Unmodified	_YNKLLNNNL_					0	0	0		nc|ENSG00000165309|Q5W041-3|ARMC3;ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;ARMC3|p.E689Rfs*20|1|0.17|ENSG00000165309|chr10:23030607-23030608|-/A|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3	nc|ENSG00000165309|Q5W041-3|ARMC3	nc|ENSG00000165309|Q5W041-3|ARMC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	553.3036499023438	2	553.303655	1104.59276	-1.1946	-0.00066095	3.1148	0.0017234	1.9203	0.0010625	553.3050753368713	30.53	0.268	30.53	30.42	30.688	0					15	7	3	0	0	0	0.35021	1	10402	10402		16.473	0	1	185510			50486	226	33348	33489	51135	51135					0.04464530363270569
YNKPIEEE	8	Unmodified	_YNKPIEEE_					0	0	0			REV__TRRAP-ASNS|1|fusion	REV__TRRAP-ASNS|1|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.2463684082031	2	511.245472	1020.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.016	1	30.016	29.516	30.516	0								0	0	0	1.7419	1	11063	11063		57.811	2.3071	1		+		50487	17246	33349	33490	51136	51136					-0.033028329272838164
YNKVTAAY	8	Unmodified	_YNKVTAAY_					0	0	0			REV__ENSG00000135622|ENST00000357877|SEMA4F	REV__ENSG00000135622|ENST00000357877|SEMA4F	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	465.2394714355469	2	465.239993	928.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.404	1	33.404	32.904	33.904	0								0	0	0	1.7419	1	12782	12782		35.201	0	1		+		50488	14814	33350	33491	51137	51137					-0.0016619051091311121
YNLFKVRQ	8	Unmodified	_YNLFKVRQ_					0	0	0			REV__nc|ENSG00000196218|P21817-2|RYR1	REV__nc|ENSG00000196218|P21817-2|RYR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.3052368164062	2	534.303458	1066.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.255	1	20.255	19.755	20.755	0								0	0	0	1.7419	1	5389	5389		26.796	1.3459	1		+		50489	17234	33351	33492	51138	51138					0.061731554340894945
YNRWGEVMHY	10	Oxidation (M)	_YNRWGEVM(Oxidation (M))HY_		YNRWGEVM(1)HY		YNRWGEVM(49)HY	0	0	1			REV__ENST00000368324.4_1_1:155852837-155852948:+|nuORF	REV__ENST00000368324.4_1_1:155852837-155852948:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	685.801025390625	2	685.800954	1369.58736	-0.85668	-0.00058751	1.3927	0.0009551	0.53601	0.00036759	685.802036363464	15.951	0.10055	15.951	15.887	15.987	0					6	4	2	0	0	0	0.46215	1	3732	3732		49.442	12.995	1	42431	+		50490	18604	33352	33493	51139	51139		692			-0.08265516490837399
YNSLARLF	8	Unmodified	_YNSLARLF_					0	0	0			REV__ENSG00000140057|ENST00000267584|AK7	REV__ENSG00000140057|ENST00000267584|AK7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.2688293457031	2	492.269084	982.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.535	1	41.535	41.035	42.035	0								0	0	0	1.7419	1	16528	16528		37.159	0	1		+		50491	15059	33353	33494	51140	51140					0.03165491134370768
YNTDDKPEE	9	Unmodified	_YNTDDKPEE_					0	0	0		tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	555.735595703125	2	555.732926	1109.4513	-0.44984	-0.00024999	3.7735	0.0020971	3.3236	0.0018471	555.7355128840717	36.029	0.14236	36.029	35.96	36.102	0					9	6	2	0	0	0	0.44593	1	12196	12196		37.812	0.65241	1	53092			50492	22907	33354	33495	51141	51141					-0.0990493252052147
YNVLCDKY	8	Unmodified	_YNVLCDKY_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L;CNOT6|p.A202V|1|0.39|ENSG00000113300|chr5:180565865-180565865|C/T|missense_variant;CNOT6|p.L251Wfs*2|1|0.09|ENSG00000113300|chr5:180567114-180567114|T/-|frameshift_variant;ENSG00000113300|ENST00000261951|CNOT6	nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	509.2395324707031	2	509.239135	1016.46372	-0.01785	-9.09E-06	0.41764	0.00021268	0.39979	0.00020359	509.2395077536715	39.186	0.31706	39.186	39.084	39.401	0					23	11	3	0	0	0	0.60719	1	14889	14889		47.916	0	1	185300			50493	4287	33355	33496	51142	51142					-0.04385567591180006
YNVLLFVDG	9	Unmodified	_YNVLLFVDG_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	520.276123046875	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.78	1	35.78	35.28	36.28	0								0	0	0	0.3304	1	13444	13444		29.15	0	1				50494	2674	33356	33497	51143	51143					0.020869382117098212
YNVVVSNLLF	10	Unmodified	_YNVVVSNLLF_					0	0	0		ENST00000460731.5_1_7:77166863-77213036:+|nuORF	ENST00000460731.5_1_7:77166863-77213036:+|nuORF	ENST00000460731.5_1_7:77166863-77213036:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	584.3240966796875	2	584.324057	1166.63356	3.2178	0.0018802	-1.9992	-0.0011682	1.2186	0.00071206	584.322684004562	48.643	0.16519	48.643	48.53	48.695	0					15	8	2	0	0	0	0.56931	1	19289	19289		37.812	4.9991	1	88338			50495	9721	33357	33498	51144	51144					0.05690871682895704
YNWALLSLE	9	Unmodified	_YNWALLSLE_					0	0	0			REV__ENST00000325222.8_1_7:148451159-148451216:+|nuORF	REV__ENST00000325222.8_1_7:148451159-148451216:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	554.7882080078125	2	554.787307	1107.56006	1.1354	0.00062988	-0.0076387	-4.2378E-06	1.1277	0.00062564	554.7872753197569	34.928	1.0832	34.928	34.568	35.651	0					80	37	3	0	0	0	0.48389	1	12612	12612		34.173	2.6427	1	120870	+		50496	18353	33358	33499	51145	51145					0.010583232404314913
YNYLKYNNP	9	Unmodified	_YNYLKYNNP_					0	0	0			REV__tr|U7T016|U7T016_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00853PE=4SV=1	REV__tr|U7T016|U7T016_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00853PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	595.294189453125	2	594.787838	1187.56112	3.1709	0.001886	3.9629	0.0023571	7.1338	0.0042431	594.7916991620518	45.081	0.28041	45.081	44.982	45.263	0					27	12	3	0	0	0	0.37197	1	18043	18043		44.117	6.3053	1	247280	+		50497	22048	33359	33500	51146	51146					-0.02515462390670109
YNYPATLTPS	10	Unmodified	_YNYPATLTPS_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	563.7736206054688	2	563.774396	1125.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.69	1	40.69	40.19	41.19	0								0	0	0	0.38797	1	16038	16038		34.173	1.3601	1				50498	7503	33360	33501	51147	51147					-0.02350571001852586
YPAAKGGFQV	10	Unmodified	_YPAAKGGFQV_					0	0	0		ENSG00000120738|ENST00000239938|EGR1	ENSG00000120738|ENST00000239938|EGR1	ENSG00000120738|ENST00000239938|EGR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2744750976562	2	519.274367	1036.53418	0.29017	0.00015068	0.1894	9.8352E-05	0.47957	0.00024903	519.2742305471332	34.825	0.45775	34.825	34.489	34.947	0					17	9	3	0	0	0	0.51121	1	13384	13384		44.117	8.4985	1	131740			50499	3190	33361	33502	51148	51148					0.01737473788830357
YPADQHVSV	9	Unmodified	_YPADQHVSV_					0	0	0			REV__ENST00000473976.1_1_6:31937656-31938043:-|nuORF	REV__ENST00000473976.1_1_6:31937656-31938043:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	508.24407958984375	2	508.245806	1014.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.448	1	25.448	24.948	25.948	0								0	0	0	0.30504	1	8093	8093		34.173	6.2903	1		+		50500	17477	33362	33503	51149	51149					-0.029599934875591316
YPALLIIPA	9	Unmodified	_YPALLIIPA_					0	0	0			REV__SLC16A7|p.F267L|1|0.28|ENSG00000118596|chr12:59775096-59775096|C/A|missense_variant	REV__SLC16A7|p.F267L|1|0.28|ENSG00000118596|chr12:59775096-59775096|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	485.79986572265625	2	485.802229	969.589904	-2.9142	-0.0014157	-1.2449	-0.00060476	-4.1591	-0.0020205	485.8016113963765	39.65	0.31969	39.65	39.557	39.877	0					30	16	2	0	0	0	0.43174	1	14116	14116		39.021	5.5059	1	130060	+		50501	21524	33363	33504	51150	51150					0.10389306976412627
YPAMPTGQVGR	11	Unmodified	_YPAMPTGQVGR_					0	0	0			REV__ENST00000497914.5_1_7:43915744-43915975:-|nuORF	REV__ENST00000497914.5_1_7:43915744-43915975:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	588.7946166992188	2	588.79514	1175.57573	-1.7596	-0.0010361	0.52811	0.00031095	-1.2315	-0.00072512	588.7956024964301	41.28	0.41252	41.28	41.134	41.547	0					69	23	4	0	0	0	0.63398	1	14546	14546		33.922	4.7516	1	1709400	+		50502	19791	33364	33505	51151	51151					-0.005037135141492399
YPAPVPLPY	9	Unmodified	_YPAPVPLPY_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	508.77655029296875	2	508.776211	1015.53787	-0.53703	-0.00027323	2.0079	0.0010216	1.4708	0.00074833	508.77719391126635	34.991	0.34583	34.991	34.785	35.131	0					39	15	3	0	0	0	0.43174	1	11804	11804		39.021	0.21535	1	347730			50503	5812	33365	33506	51152	51152					0.03072143562656038
YPAQGPTPPA	10	Unmodified	_YPAQGPTPPA_					0	0	0		ENST00000553080.1_1_16:715614-715659:+|nuORF	ENST00000553080.1_1_16:715614-715659:+|nuORF	ENST00000553080.1_1_16:715614-715659:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	499.750244140625	2	499.750724	997.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.179	1	36.179	35.679	36.679	0								0	0	0	0.35368	1	12258	12258		42.396	5.237	1				50504	10635	33366	33507	51153	51153					-0.011948054821800724
YPAQGPTPPA	10	Unmodified	_YPAQGPTPPA_					0	0	0		ENST00000553080.1_1_16:715614-715659:+|nuORF	ENST00000553080.1_1_16:715614-715659:+|nuORF	ENST00000553080.1_1_16:715614-715659:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	499.7497863769531	2	499.750724	997.486896	-2.1569	-0.0010779	0.36282	0.00018132	-1.794	-0.00089657	499.75083816595867	14.946	0.20567	14.946	14.867	15.073	0					19	9	3	0	0	0	0.56931	1	3248	3248		37.812	4.2959	1	128650			50505	10635	33366	33507	51154	51154					-0.011948054821800724
YPAQGVQQF	9	Unmodified	_YPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	519.2567749023438	2	519.256174	1036.49779	1.4268	0.0007409	0.61279	0.0003182	2.0396	0.0010591	519.2566942887273	36.431	0.51811	36.431	36.286	36.804	0					50	27	2	0	0	0	0.062676	1	11966	11966		90.777	16.522	1	144370			50506	2871	33367	33508	51155	51155					-0.01899403107904618
YPAQGVQQF	9	Unmodified	_YPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.256591796875	2	519.256174	1036.49779	1.3858	0.0007196	-0.056266	-2.9217E-05	1.3296	0.00069038	519.2558957697534	36.747	0.77216	36.747	36.496	37.268	0					50	21	4	0	0	0	0.0062553	2	13894	13894;14055		152.63	62.264	1	725160			50507	2871	33367	33508	51156;51157	51156					-0.01899403107904618
YPAQGVQQF	9	Unmodified	_YPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	519.2570190429688	2	519.256174	1036.49779	1.1267	0.00058507	-0.12215	-6.343E-05	1.0046	0.00052164	519.2560694452457	36.653	0.66968	36.653	36.509	37.178	0					49	20	3	0	0	0	0.015835	1	14356	14356		128.86	46.621	1	384860			50508	2871	33367	33508	51158	51158					-0.01899403107904618
YPAQGVQQF	9	Unmodified	_YPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.257568359375	2	519.256174	1036.49779	1.3187	0.00068474	0.51029	0.00026497	1.829	0.00094971	519.256429927058	36.463	0.44157	36.463	36.321	36.763	0					37	20	2	0	0	0	0.062676	1	13107	13107		90.777	25.311	1	86079			50509	2871	33367	33508	51159	51159					-0.01899403107904618
YPAQGVQQF	9	Unmodified	_YPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	519.2564086914062	2	519.256174	1036.49779	0.97565	0.00050661	0.85438	0.00044364	1.83	0.00095025	519.2565011163531	36.465	0.43526	36.465	36.342	36.777	0					36	20	2	0	0	0	0.13519	1	13043	13043		71.296	20.103	1	138390			50510	2871	33367	33508	51160	51160					-0.01899403107904618
YPAQGVQQF	9	Unmodified	_YPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2567138671875	2	519.256174	1036.49779	0.28996	0.00015056	0.54268	0.00028179	0.83264	0.00043236	519.2565990879356	36.622	0.75929	36.622	36.428	37.187	0					42	15	3	0	0	0	0.011305	1	14290	14290		138.24	28.122	1	948140			50511	2871	33367	33508	51161	51161					-0.01899403107904618
YPAQGVQQF	9	Unmodified	_YPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	519.2565307617188	2	519.256174	1036.49779	1.6005	0.00083109	-0.65213	-0.00033862	0.9484	0.00049246	519.2557924297698	36.673	0.75964	36.673	36.411	37.171	0					28	15	2	0	0	0	0.015835	1	14236	14236		128.86	43.946	1	1107500			50512	2871	33367	33508	51162	51162					-0.01899403107904618
YPATPTLLF	9	Unmodified	_YPATPTLLF_					0	0	0			REV__ENST00000453571.5_1_11:47290775-47295429:+|nuORF	REV__ENST00000453571.5_1_11:47290775-47295429:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	511.779541015625	2	511.781493	1021.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.187	1	37.187	36.687	37.687	0								0	0	0	0.15865	1	13318	13318		57.811	9.8957	1		+		50513	19332	33368	33509	51163	51163					0.038521262170888804
YPCMRILK	8	Unmodified	_YPCMRILK_					0	0	0			REV__ENSG00000176571|ENST00000518476|CNBD1	REV__ENSG00000176571|ENST00000518476|CNBD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	512.2772827148438	2	512.277541	1022.54053	-0.31491	-0.00016132	-0.75929	-0.00038897	-1.0742	-0.00055029	512.2771753769869	35.753	0.18933	35.753	35.675	35.864	0					19	9	3	0	0	0	0.61938	1	12088	12088		35.201	0	1	313700	+		50514	16661	33369	33510	51164	51164					0.03015952424311763
YPDEKSVCL	9	Carbamidomethyl (C)	_YPDEKSVC(Carbamidomethyl (C))L_	YPDEKSVC(1)L		YPDEKSVC(75)L		0	1	0		ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	555.760498046875	2	555.760432	1109.50631	1.0955	0.00060884	-0.77021	-0.00042805	0.32529	0.00018078	555.7600675362144	33.509	0.62509	33.509	33.348	33.973	0					33	13	3	0	0	0	0.11898	1	12731	12731		75.043	30.666	1	568810			50515	3405	33370	33511	51165	51165	138				-0.04406217253608702
YPDPYNVLK	9	Unmodified	_YPDPYNVLK_					0	0	0			REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	554.7888793945312	2	554.787307	1107.56006	1.4161	0.00078562	0.092768	5.1467E-05	1.5088	0.00083709	554.7873367957105	34.993	0.92246	34.993	34.544	35.467	0					82	42	2	0	0	0	0.37197	1	11549	11549		44.117	3.3386	1	124850	+		50516	21959	33371	33512	51166	51166					0.010583232404314913
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB2B|p.S168N|1|0.15|ENSG00000137285|chr6:3225586-3225586|C/T|missense_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.7764892578125	2	578.776416	1155.53828	-0.049841	-2.8847E-05	0.52921	0.00030629	0.47937	0.00027745	578.7768628893098	40.949	0.23853	40.949	40.814	41.053	0					11	8	2	0	0	0	0.28897	1	13656	13656		51.193	11.94	1	43890			50517	7342	33372	33513	51167	51167					-0.033268047797946565
YPDRIMNTF	9	Oxidation (M)	_YPDRIM(Oxidation (M))NTF_		YPDRIM(1)NTF		YPDRIM(110)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB2B|p.D177Hfs*21|1|0.32|ENSG00000137285|chr6:3225559-3225560|TC/-|frameshift_variant;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB2B|p.S168N|1|0.15|ENSG00000137285|chr6:3225586-3225586|C/T|missense_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.774169921875	2	586.773874	1171.53319	3.1989	0.001877	0.72923	0.0004279	3.9281	0.0023049	587.2767507418675	34.611	1.0497	34.611	34.212	35.262	0					71	21	5	0	0	0	0.02953	1	13366	13366		109.48	43.049	1	892460			50518	7342	33372	33514	51168	51168		294			-0.04571108642426225
YPEPADRTM	9	Unmodified	_YPEPADRTM_					0	0	0		ENST00000489096.5_1_4:26861565-26861598:-|nuORF	ENST00000489096.5_1_4:26861565-26861598:-|nuORF	ENST00000489096.5_1_4:26861565-26861598:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	540.2459716796875	2	540.244949	1078.47534	-0.03442	-1.8595E-05	0.64163	0.00034664	0.60721	0.00032804	540.2454325960781	36.612	0.17738	36.612	36.537	36.715	0					15	9	2	0	0	0	0.5741	1	12383	12383		24.519	0.99649	1	115540			50519	10052	33373	33515	51169	51169					-0.060753705678507686
YPFFRAKAK	9	Unmodified	_YPFFRAKAK_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	564.323974609375	2	564.321651	1126.62875	1.8906	0.0010669	1.0858	0.00061276	2.9764	0.0016796	564.32225199511	12.933	1.6033	12.933	12.63	14.234	0					84	35	4	0	0	0	0.56424	1	2966	2966		18.324	11.131	1	8887000			50520	4197	33374	33516	51170	51170					0.0705003233078969
YPGCTKVY	8	Carbamidomethyl (C)	_YPGC(Carbamidomethyl (C))TKVY_	YPGC(1)TKVY		YPGC(79)TKVY		0	1	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	494.2340087890625	2	494.233853	986.453153	0.7584	0.00037483	-0.93619	-0.00046269	-0.17778	-8.7865E-05	494.23341654345506	26.823	0.5084	26.823	26.671	27.18	0					32	12	3	0	0	0	0.32815	1	9344	9344		79.451	29.426	1	394170			50521	2177	33375	33517	51171	51171	85				-0.04061550245603485
YPGCTKVY	8	Carbamidomethyl (C)	_YPGC(Carbamidomethyl (C))TKVY_	YPGC(1)TKVY		YPGC(63)TKVY		0	1	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.23345947265625	2	494.233853	986.453153	-0.045753	-2.2613E-05	-0.67411	-0.00033317	-0.71986	-0.00035578	494.2334215402687	26.845	0.45815	26.845	26.677	27.135	0					19	9	3	0	0	0	0.46905	1	9716	9716		63.306	24.285	1	156900			50522	2177	33375	33517	51172	51172	85				-0.04061550245603485
YPGCTKVY	8	Carbamidomethyl (C)	_YPGC(Carbamidomethyl (C))TKVY_	YPGC(1)TKVY		YPGC(77)TKVY		0	1	0		ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	ENSG00000102554|ENST00000377687|KLF5	ENSG00000102554|ENST00000377687|KLF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	494.2340087890625	2	494.233853	986.453153	-0.63665	-0.00031465	0.93213	0.00046069	0.29548	0.00014604	494.2341225089667	26.795	0.56731	26.795	26.654	27.221	0					29	11	3	0	0	0	0.35045	1	9510	9510		76.774	15.802	1	408930			50523	2177	33375	33517	51173	51173	85				-0.04061550245603485
YPGIGKNPF	9	Unmodified	_YPGIGKNPF_					0	0	0		ENST00000313349.3_1_2:64862767-64862863:-|nuORF	ENST00000313349.3_1_2:64862767-64862863:-|nuORF	ENST00000313349.3_1_2:64862767-64862863:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.76519775390625	2	496.763635	991.512717	-0.33216	-0.00016501	4.0939	0.0020337	3.7617	0.0018687	496.76578908377627	32.418	0.17225	32.418	32.331	32.503	0					8	4	3	0	0	0	0.47428	1	11912	11912		35.201	3.2459	1	198530			50524	8568	33376	33518	51174	51174					0.01662088760087954
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	490.253173828125	2	490.253434	978.492316	-0.069107	-3.388E-05	-0.29527	-0.00014476	-0.36438	-0.00017864	490.2530652636685	28.857	0.55071	28.857	28.628	29.179	0					21	11	3	0	0	0	0.13483	1	10647	10647		71.378	12.596	1	151960			50525	2841	33377	33519	51175	51175					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2535095214844	2	490.253434	978.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.637	1	28.637	28.137	29.137	0								0	0	0	0.15865	1	9532	9532		57.811	15.415	1				50526	2841	33377	33519	51176	51176					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	490.2537841796875	2	490.253434	978.492316	-0.11991	-5.8784E-05	0.14964	7.3361E-05	0.029735	1.4577E-05	490.25334675686264	28.689	0.41636	28.689	28.519	28.936	0					18	10	2	0	0	0	0.30268	1	9543	9543		50.025	5.9077	1	101690			50527	2841	33377	33519	51177	51177					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2530822753906	2	490.253434	978.492316	-0.54025	-0.00026486	-0.054107	-2.6526E-05	-0.59436	-0.00029139	490.25341557721595	28.818	0.71284	28.818	28.511	29.224	0					36	14	3	0	0	0	0.1236	1	10448	10448		73.975	31.5	1	769440			50528	2841	33377	33519	51178	51178					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	490.2530822753906	2	490.253434	978.492316	0.77322	0.00037907	-0.72614	-0.00035599	0.047081	2.3081E-05	490.25296176659174	28.801	0.6651	28.801	28.542	29.207	0					34	13	3	0	0	0	0.11118	1	10488	10488		76.847	25.511	1	847520			50529	2841	33377	33519	51179	51179					0.002209181002854166
YPHATHDL	8	Unmodified	_YPHATHDL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	477.2269287109375	2	477.227417	952.44028	0.39079	0.0001865	-1.4421	-0.00068821	-1.0513	-0.00050171	477.2265296056261	22.212	0.61733	22.212	21.867	22.485	0					30	14	3	0	0	0	0.49887	1	7192	7192		60.294	15.763	1	552800			50530	6170	33378	33520	51180	51180					-0.03784245313477186
YPHATHDL	8	Unmodified	_YPHATHDL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	477.2273864746094	2	477.227417	952.44028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.024	1	22.024	21.524	22.524	0								0	0	0	1.7419	1	6490	6490		60.294	26.121	1				50531	6170	33378	33520	51181	51181					-0.03784245313477186
YPIEGTHII	9	Unmodified	_YPIEGTHII_					0	0	0			REV__ZNF117|p.I326Ffs*28|1|0.45|ENSG00000152926|chr7:64978595-64978595|T/-|frameshift_variant	REV__ZNF117|p.I326Ffs*28|1|0.45|ENSG00000152926|chr7:64978595-64978595|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	521.7822875976562	2	521.782025	1041.5495	0.30689	0.00016013	0.50661	0.00026434	0.81349	0.00042447	521.7820432590372	32.987	0.26831	32.987	32.894	33.162	0					20	11	3	0	0	0	0.17854	1	11059	11059		47.916	9.1095	1	304520	+		50532	15523	33379	33521	51182	51182					0.030383405859993218
YPIEHGIIT	9	Unmodified	_YPIEHGIIT_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.7822875976562	2	521.782025	1041.5495	0.79471	0.00041467	-0.21266	-0.00011096	0.58205	0.00030371	521.7818474342821	32.935	0.30444	32.935	32.827	33.131	0					35	13	3	0	0	0	0.21263	1	10673	10673		44.117	0	1	1564300			50533	2493	33380	33522	51183	51183					0.030383405859993218
YPIEHGIIT	9	Unmodified	_YPIEHGIIT_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	521.7827758789062	2	521.782025	1041.5495	3.391	0.0017694	-2.4763	-0.0012921	0.91477	0.00047731	521.7806627153225	33.127	0.74142	33.127	32.892	33.633	0					30	15	2	0	0	0	0.28897	1	12548	12548		35.618	0	1	14539000			50534	2493	33380	33522	51184	51184					0.030383405859993218
YPIEHGIITN	10	Unmodified	_YPIEHGIITN_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.8035278320312	2	578.803488	1155.59242	0.77567	0.00044896	-0.13631	-7.8898E-05	0.63936	0.00037006	578.8033128493272	31.555	0.31617	31.555	31.421	31.737	0					37	14	4	0	0	0	0.43008	1	10117	10117		52.937	1.6012	1	935880			50535	2493	33381	33523	51185	51185					0.02085110643452026
YPIEHGIITN	10	Unmodified	_YPIEHGIITN_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8036499023438	2	578.803488	1155.59242	1.6439	0.00095147	-1.2739	-0.00073734	0.36995	0.00021413	578.8025844814896	31.8	0.39527	31.8	31.653	32.048	0					23	8	4	0	0	0	0.36647	1	12018	12018		59.931	3.497	1	1412600			50536	2493	33381	33523	51186	51186					0.02085110643452026
YPIEIKEE	8	Unmodified	_YPIEIKEE_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	510.764892578125	2	510.76604	1019.51753	0.0073876	3.7734E-06	-3.6116	-0.0018447	-3.6042	-0.0018409	510.764419158097	36.735	0.16472	36.735	36.681	36.846	0					7	3	3	0	0	0	0.51384	1	14317	14317		58.782	12.83	1	127910			50537	5503	33382	33524	51187	51187					0.00854928112187281
YPILGQFI	8	Unmodified	_YPILGQFI_					0	0	0			REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	475.7680969238281	2	475.770929	949.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.44	1	38.44	37.94	38.94	0								0	0	0	1.7419	1	14607	14607		46.766	0	1		+		50538	22226	33383	33525	51188	51188					0.05052160908223868
YPKANIVAY	9	Unmodified	_YPKANIVAY_					0	0	0		ENSG00000126261|ENST00000246548|UBA2;ENST00000592841.5_1_19:34919394-34922879:+|nuORF	ENSG00000126261|ENST00000246548|UBA2	ENSG00000126261|ENST00000246548|UBA2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	519.7843627929688	2	519.784567	1037.55458	0.064128	3.3333E-05	0.4653	0.00024185	0.52942	0.00027519	519.7846838697449	34.106	0.38625	34.106	33.909	34.295	0					19	10	3	0	0	0	0.41113	1	12633	12633		18.324	0	1	161200			50539	3470	33384	33526	51189	51189					0.037306444486148393
YPLAHFDLFAR	11	Unmodified	_YPLAHFDLFAR_					0	0	0			REV__ENST00000277462.9_1_9:130887138-130890631:-|nuORF	REV__ENST00000277462.9_1_9:130887138-130890631:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	450.572265625	3	450.571545	1348.69281	0.63753	0.00028725	0.65268	0.00029408	1.2902	0.00058133	450.57196645228686	19.735	0.13382	19.735	19.661	19.795	0					6	3	2	0	0	0	0.78029	1	6029	6029		19.263	1.4295	1	267940	+		50540	15380	33385	33527	51190	51190					0.032407676970706234
YPLAVTKY	8	Unmodified	_YPLAVTKY_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	477.76806640625	2	477.768386	953.522219	0.83963	0.00040115	-1.8311	-0.00087485	-0.99148	-0.0004737	477.7675472340773	34.53	0.21281	34.53	34.376	34.589	0					8	4	2	0	0	0	0.59773	1	13258	13258		49.442	3.4896	1	535840			50541	929	33386	33528	51191	51191					0.04359857045608351
YPLEAVRM	8	Unmodified	_YPLEAVRM_					0	0	0		ENST00000563986.1_1_15:72494793-72499131:-|nuORF;ENST00000570166.1_1_15:72495361-72499152:-|nuORF;nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM	ENST00000563986.1_1_15:72494793-72499131:-|nuORF	ENST00000563986.1_1_15:72494793-72499131:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	489.75750732421875	2	489.757495	977.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.785	1	38.785	38.285	39.285	0								0	0	0	1.7419	1	14746	14746		49.442	15.926	1				50542	1406	33387	33529	51192	51192					0.010787290254029358
YPLEGSRSY	9	Unmodified	_YPLEGSRSY_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	536.2593383789062	2	536.258914	1070.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.883	1	29.883	29.383	30.383	0								0	0	0	0.091069	1	10718	10718		74.255	20.904	1				50543	6252	33388	33530	51193	51193					-0.029157243160852886
YPLEGSRSY	9	Unmodified	_YPLEGSRSY_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	536.2586669921875	2	536.258914	1070.50327	1.2515	0.00067112	-0.64886	-0.00034796	0.60262	0.00032316	536.2589405738735	29.876	0.25819	29.876	29.767	30.025	0					7	5	2	0	0	0	0.33044	1	11101	11101		47.657	0	1	139660			50544	6252	33388	33530	51194	51194					-0.029157243160852886
YPLEGSRSY	9	Unmodified	_YPLEGSRSY_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2597045898438	2	536.258914	1070.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.781	1	29.781	29.281	30.281	0								0	0	0	0.072369	1	10949	10949		79.713	16.406	1				50545	6252	33388	33530	51195	51195					-0.029157243160852886
YPLLHALD	8	Unmodified	_YPLLHALD_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	471.2579040527344	2	471.258185	940.501818	-0.58501	-0.00027569	-0.20398	-9.6128E-05	-0.78899	-0.00037182	471.25798066280964	34.536	0.21636	34.536	34.44	34.656	0					13	6	3	0	0	0	0.6282	1	12223	12223		44.531	3.9584	1	227870	+		50546	16206	33389	33531	51196	51196					0.029186863857944445
YPLLHEGI	8	Unmodified	_YPLLHEGI_					0	0	0			REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	REV__TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	471.2579650878906	2	471.258185	940.501818	-1.3626	-0.00064214	0.83466	0.00039334	-0.52794	-0.0002488	471.2585030858713	34.586	0.27614	34.586	34.473	34.749	0					30	12	3	0	0	0	0.68754	1	11651	11651		35.201	0	1	276860	+		50547	15549	33390	33532	51197	51197					0.02918686385817182
YPLLPLYPER	10	Unmodified	_YPLLPLYPER_					0	0	0		FMN2|p.P1098Lfs*177|1|0.41|ENSG00000155816|chr1:240208101-240208101|C/-|frameshift_variant	FMN2|p.P1098Lfs*177|1|0.41|ENSG00000155816|chr1:240208101-240208101|C/-|frameshift_variant	FMN2|p.P1098Lfs*177|1|0.41|ENSG00000155816|chr1:240208101-240208101|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	420.9039611816406	3	420.904413	1259.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.219	1	16.219	15.719	16.719	0								0	0	0	0.40797	1	4592	4592		28.081	0.43757	1				50548	11142	33391	33533	51198	51198					0.07195133608320248
YPNSGSVSAY	10	Unmodified	_YPNSGSVSAY_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.7352905273438	2	522.735271	1043.45599	1.6563	0.00086581	-0.3515	-0.00018374	1.3048	0.00068207	522.7350478668741	32.385	0.4185	32.385	32.303	32.721	0					21	10	3	0	0	0	0.46128	1	11880	11880		49.536	3.5638	1	362620			50549	4052	33392	33534	51199	51199					-0.06400003587077663
YPNSGSVSAY	10	Unmodified	_YPNSGSVSAY_					0	0	0		nc|ENSG00000136068|O75369-8|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	522.7360229492188	2	522.735271	1043.45599	0.44373	0.00023195	0.78585	0.00041079	1.2296	0.00064275	522.7356960504387	32.43	0.4205	32.43	32.219	32.64	0					15	8	2	0	0	0	0.21754	1	12192	12192		77.318	8.5308	1	567020			50550	4052	33392	33534	51200	51200					-0.06400003587077663
YPNVNIHNF	9	Unmodified	_YPNVNIHNF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.2750244140625	2	559.274898	1116.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.528	1	39.528	39.028	40.028	0								0	0	0	0.16876	1	15550	15550		55.504	9.532	1				50551	2899	33393	33535	51201	51201					-0.018363118422939806
YPNVNIHNF	9	Unmodified	_YPNVNIHNF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	559.2754516601562	2	559.274898	1116.53524	1.8265	0.0010215	-0.58077	-0.00032481	1.2457	0.00069668	559.2744040130332	39.692	0.90249	39.692	39.202	40.104	0					51	20	3	0	0	0	0.020824	2	15762	15596;15762		120.62	50.993	1	601620			50552	2899	33393	33535	51202;51203	51203					-0.018363118422939806
YPPMPPQPGGP	11	Unmodified	_YPPMPPQPGGP_					0	0	0			REV__ENSG00000178719|ENST00000395068|GRINA	REV__ENSG00000178719|ENST00000395068|GRINA	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.2711181640625	2	569.273509	1136.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.918	1	35.918	35.418	36.418	0								0	0	0	0.39048	1	13507	13507		39.253	0.44669	1		+		50553	16742	33394	33536	51204	51204					-0.03033903291475326
YPPVNLVF	8	Unmodified	_YPPVNLVF_					0	0	0			REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	474.7608947753906	2	474.763104	947.511654	-2.6246	-0.001246	-2.3643	-0.0011225	-4.9889	-0.0023685	474.76203339272075	34.974	0.2056	34.974	34.909	35.115	0					10	6	2	0	0	0	0.55361	1	12432	12432		54.765	2.4655	1	87448	+		50554	17217	33395	33537	51205	51205					0.03579874391186877
YPQNQPDKL	9	Unmodified	_YPQNQPDKL_					0	0	0			REV__ENSG00000165185|ENST00000337530|KIAA1958	REV__ENSG00000165185|ENST00000337530|KIAA1958	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	551.7801513671875	2	551.780013	1101.54547	0.11613	6.4079E-05	0.32011	0.00017663	0.43624	0.00024071	551.7800700024396	31.372	0.23225	31.372	31.281	31.513	0					7	5	2	0	0	0	0.13726	1	11813	11813		64.207	11.271	1	203070	+		50555	16029	33396	33538	51206	51206					-0.0012374890770843194
YPQPELLY	8	Unmodified	_YPQPELLY_					0	0	0			REV__ENSG00000212123|ENST00000419421|PRR22	REV__ENSG00000212123|ENST00000419421|PRR22	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	511.76312255859375	2	511.7633	1021.51205	0.45705	0.0002339	-1.0669	-0.00054598	-0.6098	-0.00031207	511.7628494249898	28.589	0.16284	28.589	28.482	28.645	0					9	3	3	0	0	0	0.44433	1	10501	10501		65.803	17.888	1	267630	+		50556	17548	33397	33539	51207	51207					0.002152493203652739
YPQPPSQSY	9	Unmodified	_YPQPPSQSY_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	533.7459106445312	2	533.745639	1065.47673	1.756	0.00093724	0.28337	0.00015125	2.0393	0.0010885	533.7454517088232	32.867	1.1202	32.867	31.945	33.065	0					69	26	4	0	0	0	0.27249	1	12449	12449		52.937	8.4056	1	754890			50557	4242	33398	33540	51208	51208					-0.053394132074117806
YPQPPSQSY	9	Unmodified	_YPQPPSQSY_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	533.7457275390625	2	533.745639	1065.47673	1.1204	0.00059803	-0.074279	-3.9646E-05	1.0462	0.00055839	533.7456344924424	32.73	0.58511	32.73	32.277	32.862	0					30	17	2	0	0	0	0.27249	1	11438	11438		52.937	5.2794	1	143170			50558	4242	33398	33540	51209	51209					-0.053394132074117806
YPQPPSQSY	9	Unmodified	_YPQPPSQSY_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.7460327148438	2	533.745639	1065.47673	1.8091	0.00096559	-0.61423	-0.00032784	1.1949	0.00063775	533.7452241832301	32.8	1.12	32.8	31.852	32.972	0					60	22	4	0	0	0	0.27249	1	12306	12306		52.937	52.937	1	1165400			50559	4242	33398	33540	51210	51210					-0.053394132074117806
YPRCETFGS	9	Unmodified	_YPRCETFGS_					0	0	0			REV__ENSG00000066405|ENST00000183605|CLDN18	REV__ENSG00000066405|ENST00000183605|CLDN18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	530.2322998046875	2	530.231842	1058.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.651	1	14.651	14.151	15.151	0								0	0	0	0.38123	1	3847	3847		16.473	0.83134	1		+		50560	13125	33399	33541	51211	51211					-0.07775639739293183
YPSETTVKY	9	Unmodified	_YPSETTVKY_					0	0	0		LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant;ENSG00000135862|ENST00000258341|LAMC1	LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.2689819335938	2	544.268947	1086.52334	1.9765	0.0010758	-2.1532	-0.0011719	-0.17671	-9.6177E-05	544.2680367004577	29.374	0.55677	29.374	29.043	29.6	0					33	11	4	0	0	0	0.013878	1	10754	10754		132.76	68.551	1	713490			50561	4028	33400	33542	51212	51212					-0.01645973376139409
YPSKSILL	8	Unmodified	_YPSKSILL_					0	0	0		ENST00000486774.1_1_17:25972868-25974145:+|nuORF;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9	ENST00000486774.1_1_17:25972868-25974145:+|nuORF	ENST00000486774.1_1_17:25972868-25974145:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	460.7764892578125	2	460.776211	919.537869	-0.10399	-4.7914E-05	0.28103	0.00012949	0.17705	8.1579E-05	460.77614199568103	36.847	0.5414	36.847	36.637	37.178	0					35	24	2	0	0	0	0.8006	1	13284	13284		20.482	0	1	69823			50562	6137	33401	33543	51213	51213					0.07488143562670757
YPSRDEYEAHQ	11	Unmodified	_YPSRDEYEAHQ_					0	0	0		ENST00000442955.2_1_9:6669517-6669934:-|nuORF;RNF2|p.S310Lfs*12|1|0.35|ENSG00000121481|chr1:185100214-185100214|T/-|frameshift_variant;ENSG00000121481|ENST00000367510|RNF2	ENST00000442955.2_1_9:6669517-6669934:-|nuORF	ENST00000442955.2_1_9:6669517-6669934:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	465.5395202636719	3	465.537229	1393.58986	4.0682	0.0018939	0.68097	0.00031702	4.7492	0.0022109	465.5375762753144	16.812	0.18651	16.812	16.725	16.911	0					17	7	4	0	0	0	0.65378	1	4095	4095		32.034	0.96598	1	503840			50563	3225	33402	33544	51214	51214					-0.09119389552188295
YPSYAVNLGG	10	Unmodified	_YPSYAVNLGG_					0	0	0			REV__ENST00000469797.5_1_14:75137455-75152321:-|nuORF	REV__ENST00000469797.5_1_14:75137455-75152321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	520.7586669921875	2	520.756007	1039.49746	3.378	0.0017591	-0.0088929	-4.631E-06	3.3691	0.0017545	520.7562726576128	48.802	0.3094	48.802	48.662	48.971	0					35	16	4	0	0	0	0.32758	1	19348	19348		64.207	10.856	1	655220	+		50564	14249	33403	33545	51215	51215					-0.020708228277499074
YPTEDYKVY	9	Unmodified	_YPTEDYKVY_					0	0	0		ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF	ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.274169921875	2	589.274229	1176.53391	1.0266	0.00060498	-0.82086	-0.00048371	0.20578	0.00012126	589.273675149852	34.997	0.20868	34.997	34.878	35.087	0					10	5	2	0	0	0	0.15163	1	13081	13081		67.494	16.158	1	114600			50565	5995	33404	33546	51216	51216					-0.04729990721716604
YPTEDYKVY	9	Unmodified	_YPTEDYKVY_					0	0	0		ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF	ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.2743530273438	2	589.274229	1176.53391	0.095521	5.6288E-05	0.85383	0.00050314	0.94935	0.00055943	589.2744029372916	34.889	0.36115	34.889	34.784	35.145	0					13	7	3	0	0	0	0.016683	1	13427	13427		127.46	71.957	1	334270			50566	5995	33404	33546	51217	51217					-0.04729990721716604
YPTQPGQGY	9	Unmodified	_YPTQPGQGY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.73309326171875	2	505.732532	1009.45051	0.7558	0.00038223	-0.31488	-0.00015925	0.44092	0.00022299	505.73243906346613	30.414	0.41314	30.414	30.227	30.64	0					35	15	3	0	0	0	0.22837	1	9680	9680		58.23	8.7884	1	197620			50567	1813	33405	33547	51218	51218					-0.05383682378896992
YPTQPGQGY	9	Unmodified	_YPTQPGQGY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.732421875	2	505.732532	1009.45051	0.82355	0.00041649	-1.0306	-0.00052121	-0.20705	-0.00010471	505.73212331479397	30.687	0.56036	30.687	30.405	30.966	0					41	13	5	0	0	0	0.10915	1	11090	11090		77.318	23.966	1	1726900			50568	1813	33405	33547	51219	51219					-0.05383682378896992
YPTQPGQGY	9	Unmodified	_YPTQPGQGY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	505.7330627441406	2	505.732532	1009.45051	-0.73641	-0.00037243	0.53464	0.00027039	-0.20177	-0.00010204	505.732862972739	30.454	0.53531	30.454	30.247	30.782	0					51	18	4	0	0	0	0.30841	1	9949	9949		49.536	5.4192	1	1316800			50569	1813	33405	33547	51220	51220					-0.05383682378896992
YPTQPGQGY	9	Unmodified	_YPTQPGQGY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	505.732421875	2	505.732532	1009.45051	0.1052	5.3201E-05	-0.46161	-0.00023345	-0.35641	-0.00018025	505.73233690847997	30.473	0.55373	30.473	30.251	30.805	0					38	14	4	0	0	0	0.11898	1	10333	10333		75.043	21.692	1	770320			50570	1813	33405	33547	51221	51221					-0.05383682378896992
YPVDGYRVY	9	Unmodified	_YPVDGYRVY_					0	0	0		ENST00000465184.1_1_7:94294121-94298055:+|nuORF;ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10	ENST00000465184.1_1_7:94294121-94298055:+|nuORF	ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	378.1874084472656	3	377.85383	1130.53966	0.026673	1.0078E-05	-0.2837	-0.0001072	-0.25702	-9.7118E-05	377.8537002301717	26.869	0.27038	26.869	26.742	27.012	0					12	9	2	0	0	0	0.55379	1	8201	8201		26.693	0	1	75800			50571	7946	33406	33548	51222	51222					-0.020388474193850925
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	566.2783813476562	2	566.277106	1130.53966	0.13153	7.4485E-05	3.1607	0.0017898	3.2922	0.0018643	566.2788715554212	26.839	0.20079	26.839	26.767	26.968	0					15	7	3	0	0	0	0.22823	1	8510	8510		42.864	0	1	93451			50572	5780	33407	33549	51223	51223					-0.020388474193850925
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	566.27978515625	2	566.277106	1130.53966	-1.1725	-0.00066395	4.0097	0.0022706	2.8372	0.0016067	566.2798959945717	26.906	0.1713	26.906	26.804	26.976	0					10	4	3	0	0	0	0.026538	1	8736	8736		84.916	40.538	1	142850			50573	5780	33407	33549	51224	51224					-0.020388474193850925
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	378.1880798339844	3	377.85383	1130.53966	-2.1326	-0.00080582	1.9201	0.0007255	-0.21258	-8.0325E-05	378.1889255747054	26.933	0.1713	26.933	26.804	26.976	0					7	4	2	0	0	0	0.38666	1	8751	8751		42.864	4.1107	1	115000			50574	5780	33407	33549	51225	51225					-0.020388474193850925
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	566.2788696289062	2	566.277106	1130.53966	3.471	0.0019656	-1.2686	-0.0007184	2.2024	0.0012472	566.2763099401506	27.055	0.41719	27.055	26.821	27.238	0					17	8	3	0	0	0	0.076532	1	9637	9637		79.713	0	1	911000			50575	5780	33407	33549	51226	51226					-0.020388474193850925
YPVEIHEY	8	Unmodified	_YPVEIHEY_					0	0	0		ENSG00000197223|ENST00000410067|C1D;C1D|p.W68Gfs*16|1|0.11|ENSG00000197223|chr2:68046347-68046347|A/-|frameshift_variant;ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2522583007812	2	525.250557	1048.48656	1.3936	0.000732	-0.16648	-8.7442E-05	1.2271	0.00064455	525.2506032850525	34.993	0.22376	34.993	34.901	35.124	0					12	9	2	0	0	0	0.54629	1	11467	11467		55.504	13.03	1	90705			50576	7437	33408	33550	51227	51227					-0.03574225202055459
YPVEIHEY	8	Unmodified	_YPVEIHEY_					0	0	0		ENSG00000197223|ENST00000410067|C1D;C1D|p.W68Gfs*16|1|0.11|ENSG00000197223|chr2:68046347-68046347|A/-|frameshift_variant;ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2504272460938	2	525.250557	1048.48656	1.9012	0.00099858	-1.1494	-0.00060371	0.75179	0.00039488	525.2498857142243	35.231	0.43188	35.231	35.074	35.506	0					28	11	4	0	0	0	0.29152	1	13171	13171		85.359	35.335	1	561870			50577	7437	33408	33550	51228	51228					-0.03574225202055459
YPVEIHEY	8	Unmodified	_YPVEIHEY_					0	0	0		ENSG00000197223|ENST00000410067|C1D;C1D|p.W68Gfs*16|1|0.11|ENSG00000197223|chr2:68046347-68046347|A/-|frameshift_variant;ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.250732421875	2	525.250557	1048.48656	1.7744	0.000932	0.57928	0.00030427	2.3537	0.0012363	525.2497711731164	35.248	0.40047	35.248	35.102	35.503	0					35	11	4	0	0	0	0.29152	1	13658	13658		85.359	22.053	1	488550			50578	7437	33408	33550	51229	51229					-0.03574225202055459
YPVEIHEY	8	Unmodified	_YPVEIHEY_					0	0	0		ENSG00000197223|ENST00000410067|C1D;C1D|p.W68Gfs*16|1|0.11|ENSG00000197223|chr2:68046347-68046347|A/-|frameshift_variant;ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2504272460938	2	525.250557	1048.48656	1.1675	0.00061321	0.49171	0.00025827	1.6592	0.00087148	525.2504497157363	35.046	0.27532	35.046	34.89	35.165	0					14	8	2	0	0	0	0.32408	1	12438	12438		79.939	8.0618	1	88353			50579	7437	33408	33550	51230	51230					-0.03574225202055459
YPVEIHEY	8	Unmodified	_YPVEIHEY_					0	0	0		ENSG00000197223|ENST00000410067|C1D;C1D|p.W68Gfs*16|1|0.11|ENSG00000197223|chr2:68046347-68046347|A/-|frameshift_variant;ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.250732421875	2	525.250557	1048.48656	1.6272	0.00085467	-0.89935	-0.00047239	0.72782	0.00038229	525.2499509054111	35.17	0.67252	35.17	34.913	35.586	0					38	13	4	0	0	0	0.24714	1	13519	13519		106.42	48.604	1	1515400			50580	7437	33408	33550	51231	51231					-0.03574225202055459
YPVGGPSQ	8	Unmodified	_YPVGGPSQ_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	402.7001647949219	2	402.697961	803.381368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.809	1	29.809	29.309	30.309	0								0	0	0	1.7419	1	9438	9438		35.618	2.1027	1				50581	2514	33409	33551	51232	51232					-0.028187216078094934
YPVIGVDLQ	9	Unmodified	_YPVIGVDLQ_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.27557373046875	2	502.276575	1002.5386	0.13959	7.0111E-05	-2.4966	-0.001254	-2.357	-0.0011839	502.27550485599954	27.056	0.12659	27.056	26.976	27.102	0					5	3	2	0	0	0	0.26904	1	8811	8811		53.351	0	1	47443	+		50582	13473	33410	33552	51233	51233					0.03742938211712499
YPVKYTQTF	9	Unmodified	_YPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	573.7960205078125	2	573.795132	1145.57571	1.9842	0.0011385	-2.2317	-0.0012805	-0.24748	-0.000142	573.7943531789604	34.947	0.36097	34.947	34.863	35.224	0					17	10	2	0	0	0	0.14603	1	13558	13558		68.787	17.451	1	125700			50583	2741	33411	33553	51234	51234					0.008746097574658052
YPVKYTQTF	9	Unmodified	_YPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	573.79541015625	2	573.795132	1145.57571	1.6668	0.00095642	-1.7702	-0.0010157	-0.10332	-5.9285E-05	573.7943898169531	34.883	0.36386	34.883	34.815	35.179	0					20	7	4	0	0	0	0.11898	1	13472	13472		75.043	29.071	1	351940			50584	2741	33411	33553	51235	51235					0.008746097574658052
YPWIDLAPKA	10	Unmodified	_YPWIDLAPKA_					0	0	0			REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	REV__BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	391.8826904296875	3	391.881608	1172.623	3.1883	0.0012494	-0.29864	-0.00011703	2.8896	0.0011324	391.88148620087503	14.936	0.26808	14.936	14.828	15.096	0					9	5	3	0	0	0	0.65895	1	3842	3842		27.047	27.047	1	870980	+		50585	12294	33412	33554	51236	51236					0.04358889028480917
YPYYNNIL	8	Unmodified	_YPYYNNIL_					0	0	0			REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.2619018554688	2	530.260925	1058.5073	0.11567	6.1334E-05	0.45349	0.00024047	0.56916	0.0003018	530.2610994166587	39.835	0.78029	39.835	39.553	40.334	0					45	31	2	0	0	0	0.74117	1	15173	15173		28.254	0.37203	1	86137	+		50586	16874	33413	33555	51237	51237					-0.019616348223962632
YQEKGVRVL	9	Unmodified	_YQEKGVRVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	546.31396484375	2	546.314023	1090.61349	1.7208	0.00094007	-1.6067	-0.00087777	0.11403	6.2298E-05	546.3129442716405	25.305	0.12109	25.305	25.226	25.347	0					5	3	2	0	0	0	0.19605	1	7596	7596		62.107	17.991	1	60745			50587	4222	33414	33556	51238	51238					0.07181120742961866
YQEKGVRVL	9	Unmodified	_YQEKGVRVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	546.3145751953125	2	546.314023	1090.61349	1.8605	0.0010164	-0.87278	-0.00047681	0.98774	0.00053962	546.3136786149845	25.587	0.17954	25.587	25.496	25.675	0					11	4	3	0	0	0	0.037924	1	8759	8759		101.25	47.901	1	606760			50588	4222	33414	33556	51239	51239					0.07181120742961866
YQEKGVRVL	9	Unmodified	_YQEKGVRVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.3141479492188	2	546.314023	1090.61349	0.84019	0.00045901	0.18064	9.8685E-05	1.0208	0.00055769	546.3141463943065	25.561	0.16068	25.561	25.459	25.62	0					6	3	2	0	0	0	0.16002	1	9099	9099		66.429	0.6261	1	186310			50589	4222	33414	33556	51240	51240					0.07181120742961866
YQEKGVRVL	9	Unmodified	_YQEKGVRVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	546.3143310546875	2	546.314023	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.42	1	25.42	24.92	25.92	0								0	0	0	0.14881	1	8080	8080		60.118	12.461	1				50590	4222	33414	33556	51241	51241					0.07181120742961866
YQEKGVRVL	9	Unmodified	_YQEKGVRVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.314453125	2	546.314023	1090.61349	0.55238	0.00030178	0.19374	0.00010584	0.74612	0.00040762	546.3139708804689	25.472	0.32076	25.472	25.364	25.684	0					12	6	3	0	0	0	0.10915	1	8934	8934		77.318	20.597	1	520090			50591	4222	33414	33556	51242	51242					0.07181120742961866
YQHDDGRV	8	Unmodified	_YQHDDGRV_					0	0	0		ENSG00000197045|ENST00000358056|GMFB	ENSG00000197045|ENST00000358056|GMFB	ENSG00000197045|ENST00000358056|GMFB	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.2258605957031	2	495.225405	988.436257	-0.040619	-2.0115E-05	1.1626	0.00057577	1.122	0.00055566	495.2259237923395	16.539	0.16588	16.539	16.43	16.596	0					8	3	3	0	0	0	0.74405	1	4755	4755		27.882	1.0861	1	511060			50592	7417	33415	33557	51243	51243					-0.05842334807186944
YQHTGAVL	8	Unmodified	_YQHTGAVL_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;BUB3|p.I231Gfs*30|1|0.05|ENSG00000154473|chr10:123162349-123162350|-/GGTAA|frameshift_variant	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	444.73211669921875	2	444.732335	887.450116	-0.38123	-0.00016955	-0.23111	-0.00010278	-0.61234	-0.00027233	444.732215470558	25.283	0.53159	25.283	25.132	25.664	0					35	12	5	0	0	0	0.28427	1	8604	8604		87.754	28.972	1	6500400			50593	5089	33416	33558	51244	51244					0.001889426918864956
YQHYSTLPGV	10	Unmodified	_YQHYSTLPGV_					0	0	0			REV__nc|ENSG00000111305|Q2KHT4-5|GSG1	REV__nc|ENSG00000111305|Q2KHT4-5|GSG1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	582.7899169921875	2	582.787838	1163.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.524	1	44.524	44.024	45.024	0								0	0	0	0.41967	1	15281	15281		24.519	0	1		+		50594	13964	33417	33559	51245	51245					-0.014114623906834822
YQKIGKAL	8	Unmodified	_YQKIGKAL_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	460.78143310546875	2	460.781828	919.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.816	1	21.816	21.316	22.316	0								0	0	0	1.7419	1	6067	6067		97.473	37.179	1				50595	3635	33418	33560	51246	51246					0.0861096565678281
YQKIGKAL	8	Unmodified	_YQKIGKAL_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	460.781494140625	2	460.781828	919.549102	-0.86873	-0.0004003	0.1606	7.4004E-05	-0.70813	-0.00032629	460.78191990847614	21.816	0.15293	21.816	21.746	21.899	0					6	4	2	0	0	0	0.44433	1	6336	6336		65.803	23.329	1	158790			50596	3635	33418	33560	51247	51247					0.0861096565678281
YQLELRTTL	9	Unmodified	_YQLELRTTL_					0	0	0		nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	568.8180541992188	2	568.819138	1135.62372	3.456	0.0019658	-3.6946	-0.0021016	-0.23859	-0.00013572	568.8169911403769	43.142	0.15948	43.142	43.051	43.211	0					6	4	2	0	0	0	0.22823	1	17250	17250		58.246	15.772	1	94724			50597	11663	33419	33561	51248	51248					0.06133683677512636
YQNNSVTSY	9	Unmodified	_YQNNSVTSY_					0	0	0			REV__nc|ENSG00000085982|Q9NVE5|USP40	REV__nc|ENSG00000085982|Q9NVE5|USP40	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	538.2376098632812	2	538.238178	1074.4618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.932	1	26.932	26.432	27.432	0								0	0	0	0.1219	1	9700	9700		66.429	13.078	1		+		50598	13362	33420	33562	51249	51249					-0.07244905075413044
YQPFELRE	8	Unmodified	_YQPFELRE_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7728271484375	2	541.269281	1080.52401	3.5271	0.0019091	-2.9206	-0.0015808	0.60654	0.0003283	541.2673533652002	27.086	0.82858	27.086	26.968	27.797	0					47	16	5	0	0	0	0.51384	1	9781	9781		47.916	10.756	1	8697800			50599	7277	33421	33563	51250	51250					-0.01303133936426093
YQPGNDQP	8	Unmodified	_YQPGNDQP_					0	0	0		nc|ENSG00000257198|Q63HN1|SPATA31F2P;ENSG00000205108|ENST00000378788|FAM205A	nc|ENSG00000257198|Q63HN1|SPATA31F2P	nc|ENSG00000257198|Q63HN1|SPATA31F2P	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	459.70257568359375	2	459.701232	917.38791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.453	1	11.453	10.953	11.953	0								0	0	0	1.7419	1	2347	2347		25.45	7.1258	1				50600	7735	33422	33564	51251	51251					-0.07408828447091764
YQQPTAAP	8	Unmodified	_YQQPTAAP_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	438.2160339355469	2	438.216517	874.418482	-0.28059	-0.00012296	-0.33641	-0.00014742	-0.61701	-0.00027038	438.2163560866655	24.576	0.18749	24.576	24.497	24.684	0					10	5	3	0	0	0	0.70055	1	7279	7279		33.516	0	1	234660			50601	5777	33423	33565	51252	51252					-0.023750500620622006
YQRKGLTGRV	10	Unmodified	_YQRKGLTGRV_					0	0	0		KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	589.3438110351562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.06	1	53.06	52.56	53.56	0								0	0	0	0.41967	1	20499	20499		24.519	4.5224	1				50602	4303	33424	33566	51253	51253					0.09147016757128767
YQRWREERFRQ	11	Unmodified	_YQRWREERFRQ_					0	0	0		ENST00000507723.1_1_5:177021070-177022414:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	827.4201049804688	2	827.421479	1652.82841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.196	1	39.196	38.696	39.696	0								0	0	0	0.45674	1	13186	13186		2.3455	1.5898	1				50603	7038	33425	33567	51254	51254					0.02810435540573053
YQTKRNIH	8	Unmodified	_YQTKRNIH_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	530.2864379882812	2	530.28834	1058.56213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.231	1	14.231	13.731	14.731	0								0	0	0	1.7419	1	3043	3043		17.365	0.89182	1		+		50604	15469	33426	33568	51255	51255					0.035187967688898425
YQTSTTCNNC	10	Unmodified	_YQTSTTCNNC_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|14|1|sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|14|1|sense	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	567.71435546875	2	567.713156	1133.41176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.26	1	36.26	35.76	36.76	0								0	0	0	0.4201	1	14108	14108		17.468	0.10304	1		+		50605	20830	33427	33569	51256	51256					-0.1496109906724996
YQVLGSLGHY	10	Unmodified	_YQVLGSLGHY_					0	0	0			REV__ENST00000532122.5_1_11:44101033-44103652:+|nuORF	REV__ENST00000532122.5_1_11:44101033-44103652:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	568.7911987304688	2	568.790381	1135.56621	0.11982	6.8151E-05	2.9804	0.0016952	3.1003	0.0017634	568.7909676947495	36.131	0.1257	36.131	36.046	36.172	0					6	3	2	0	0	0	0.47859	1	13612	13612		47.657	6.8792	1	68975	+		50606	13939	33428	33570	51257	51257					0.003848414719413995
YRCLLSLLI	9	Unmodified	_YRCLLSLLI_					0	0	0			REV__KIAA0586|p.K791Rfs*14|1|0.33|ENSG00000100578|chr14:58467891-58467891|A/-|frameshift_variant	REV__KIAA0586|p.K791Rfs*14|1|0.33|ENSG00000100578|chr14:58467891-58467891|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.3258666992188	2	547.325545	1092.63654	0.53373	0.00029213	0.22022	0.00012053	0.75396	0.00041266	547.3258633327345	35.039	0.36592	35.039	34.93	35.296	0					14	7	3	0	0	0	0.24095	1	13476	13476		56.721	0	1	542970	+		50607	20782	33429	33571	51258	51258					0.09392423536087335
YRDIPELQG	9	Unmodified	_YRDIPELQG_					0	0	0		nc|ENSG00000081760|Q86V21-3|AACS;ENSG00000081760|ENST00000316519|AACS	nc|ENSG00000081760|Q86V21-3|AACS	nc|ENSG00000081760|Q86V21-3|AACS	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	545.782470703125	2	545.780013	1089.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.959	1	45.959	45.459	46.459	0								0	0	0	0.27939	1	18407	18407		39.253	0.44669	1				50608	1661	33430	33572	51259	51259					0.004282510922621441
YRDLGIASL	9	Unmodified	_YRDLGIASL_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2796325683594	2	504.279649	1006.54475	-0.062613	-3.1574E-05	-0.62466	-0.000315	-0.68727	-0.00034658	504.27934713075865	37.179	0.79393	37.179	36.774	37.568	0					91	42	3	0	0	0	0.22837	1	12225	12225		58.23	0	1	418590	+		50609	17588	33431	33573	51260	51260					0.04173456443209034
YREEGILGF	9	Unmodified	_YREEGILGF_					0	0	0		MTCH2|p.E275Rfs*4|1|0.17|ENSG00000109919|chr11:47622704-47622704|T/-|frameshift_variant;MTCH2|p.F286Sfs*14|1|0.38|ENSG00000109919|chr11:47618888-47618888|A/-|frameshift_variant;ENSG00000109919|ENST00000302503|MTCH2	MTCH2|p.E275Rfs*4|1|0.17|ENSG00000109919|chr11:47622704-47622704|T/-|frameshift_variant	MTCH2|p.E275Rfs*4|1|0.17|ENSG00000109919|chr11:47622704-47622704|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	542.2762451171875	2	542.277106	1082.53966	2.0437	0.0011082	-1.5094	-0.00081853	0.53425	0.00028971	542.2762412749694	41.847	0.11956	41.847	41.802	41.921	0					9	5	2	0	0	0	0.41113	1	16446	16446		40.778	1.5253	1	43352			50610	2597	33432	33574	51261	51261					0.001691525806336358
YRENKKLK	8	Unmodified	_YRENKKLK_					0	0	0		ENST00000487196.1_1_10:5800911-5803598:+|nuORF;nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	ENST00000487196.1_1_10:5800911-5803598:+|nuORF	ENST00000487196.1_1_10:5800911-5803598:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	360.2169494628906	3	360.217102	1077.62948	0.72796	0.00026222	-0.61532	-0.00022165	0.11264	4.0575E-05	360.21677300460203	25.748	0.22474	25.748	25.704	25.929	0					7	3	3	0	0	0	0.46013	1	8849	8849		64.207	0	1	285270			50611	2511	33433	33575	51262	51262					0.0937682697983746
YRGAHGII	8	Unmodified	_YRGAHGII_					0	0	0		ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A	ENSG00000174903|ENST00000311481|RAB1B	ENSG00000174903|ENST00000311481|RAB1B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	443.74737548828125	2	443.748319	885.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.262	1	35.262	34.762	35.762	0								0	0	0	1.7419	1	13211	13211		46.766	6.1938	1				50612	4221	33434	33576	51263	51263					0.03476355165719269
YRGKCSVTL	9	Unmodified	_YRGKCSVTL_					0	0	0		ENST00000532239.1_1_11:62365783-62365918:-|nuORF	ENST00000532239.1_1_11:62365783-62365918:-|nuORF	ENST00000532239.1_1_11:62365783-62365918:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	513.7749633789062	2	513.773677	1025.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.089	1	36.089	35.589	36.589	0								0	0	0	0.30504	1	14031	14031		34.173	7.4796	1				50613	10448	33435	33577	51264	51264					0.02105516428377996
YRGLARTTLS	10	Unmodified	_YRGLARTTLS_					0	0	0		ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3200073242188	2	569.32238	1136.63021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.225	1	43.225	42.725	43.725	0								0	0	0	0.40063	1	16928	16928		30.318	1.1682	1				50614	3707	33436	33578	51265	51265					0.06735621628899935
YRLFTQKLQ	9	Unmodified	_YRLFTQKLQ_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	598.842529296875	2	598.842948	1195.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.522	1	22.522	22.022	23.022	0								0	0	0	0.34101	1	7635	7635		26.693	1.2427	1				50615	5483	33437	33579	51266	51266					0.08133382668370359
YRLQPVTV	8	Unmodified	_YRLQPVTV_					0	0	0		ENST00000560292.2_1_15:102277413-102284889:-|nuORF	ENST00000560292.2_1_15:102277413-102284889:-|nuORF	ENST00000560292.2_1_15:102277413-102284889:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	488.2845153808594	2	488.284734	974.554916	0.79327	0.00038734	-1.468	-0.00071682	-0.67477	-0.00032948	488.2839676129998	35.729	0.51284	35.729	35.518	36.03	0					26	10	4	0	0	0	0.63077	1	13806	13806		44.117	5.3107	1	3804800			50616	10689	33438	33580	51267	51267					0.0666206416847217
YRLRSELK	8	Unmodified	_YRLRSELK_					0	0	0			REV__nc|ENSG00000183580|Q9UJT9-2|FBXL7	REV__nc|ENSG00000183580|Q9UJT9-2|FBXL7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	355.54547119140625	3	355.545219	1063.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.968	1	16.968	16.468	17.468	0								0	0	0	1.7419	1	4134	4134		15.642	0	1		+		50617	16941	33439	33581	51268	51268					0.08456540462793782
YRLTTGTEF	9	Unmodified	_YRLTTGTEF_					0	0	0			REV__CON__Q28065	REV__CON__Q28065	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	544.274658203125	2	544.274564	1086.53457	0.45029	0.00024508	0.21413	0.00011654	0.66442	0.00036163	544.2746501374868	32.737	0.41684	32.737	32.573	32.989	0					38	16	3	0	0	0	0.48389	1	10913	10913		34.173	6.2903	1	225170	+	+	50618	12605	33440	33582	51269	51269					-0.005231512819818818
YRNDSTIVF	9	Unmodified	_YRNDSTIVF_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	558.2786254882812	2	557.780013	1113.54547	-0.87895	-0.00049026	-1.3609	-0.00075907	-2.2398	-0.0012493	558.2795577447407	35.004	0.2056	35.004	34.909	35.115	0					9	6	2	0	0	0	0.2873	1	12452	12452		51.335	12.529	1	62978	+		50619	17409	33441	33583	51270	51270					-0.006757489077244827
YRNPFAIY	8	Unmodified	_YRNPFAIY_					0	0	0		MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant;ENSG00000184350|ENST00000389832|MRGPRE	MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant	MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	522.2677612304688	2	522.269084	1042.52362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.309	1	31.309	30.809	31.809	0								0	0	0	1.7419	1	11384	11384		37.028	0	1				50620	7009	33442	33584	51271	51271					0.004054911343700951
YRNPFAIY	8	Unmodified	_YRNPFAIY_					0	0	0		MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant;ENSG00000184350|ENST00000389832|MRGPRE	MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant	MRGPRE|p.Q208Sfs*103|1|0.15|ENSG00000184350|chr11:3228178-3228178|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	522.26806640625	2	522.269084	1042.52362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.084	1	31.084	30.584	31.584	0								0	0	0	1.7419	1	10662	10662		44.531	12.576	1				50621	7009	33442	33584	51272	51272					0.004054911343700951
YRNVLGKK	8	Unmodified	_YRNVLGKK_					0	0	0		tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	tr|U7SYR4|U7SYR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00904PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	326.5343017578125	3	326.534543	976.581799	0.28856	9.4226E-05	-0.39395	-0.00012864	-0.10539	-3.4412E-05	326.53437851366795	20.555	0.2728	20.555	20.425	20.698	0					13	8	2	0	0	0	0.79294	1	5511	5511		15.642	0	1	260330			50622	22877	33443	33585	51273	51273					0.0925717277965532
YRPFLDAS	8	Unmodified	_YRPFLDAS_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	484.744873046875	2	484.745442	967.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.624	1	49.624	49.124	50.124	0								0	0	0	1.7419	1	19620	19620		33.516	5.2613	1				50623	1754	33444	33586	51274	51274					-0.008707881366262882
YRQPLNVY	8	Unmodified	_YRQPLNVY_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.77978515625	2	526.779816	1051.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.256	1	28.256	27.756	28.756	0								0	0	0	1.7419	1	9354	9354		50.025	9.2464	1				50624	11435	33445	33587	51275	51275					0.021368761630810695
YRSELIIH	8	Unmodified	_YRSELIIH_					0	0	0		ZNF585A|p.H600Gfs*9|1|0.05|ENSG00000196967|chr19:37152101-37152102|-/CACC|frameshift_variant;ENSG00000245680|ENST00000532828|ZNF585B;ENSG00000196967|ENST00000292841|ZNF585A	ZNF585A|p.H600Gfs*9|1|0.05|ENSG00000196967|chr19:37152101-37152102|-/CACC|frameshift_variant	ZNF585A|p.H600Gfs*9|1|0.05|ENSG00000196967|chr19:37152101-37152102|-/CACC|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	344.19415283203125	3	344.194186	1029.56073	-0.70263	-0.00024184	1.0344	0.00035603	0.33174	0.00011418	344.19471305847367	23.651	0.2281	23.651	23.473	23.701	0					12	8	2	0	0	0	0.7914	1	7091	7091		11.511	0	1	63498			50625	7409	33446	33588	51276	51276					0.047131626801501625
YRTEQDKL	8	Unmodified	_YRTEQDKL_					0	0	0			REV__ENST00000451871.1_1_13:42499863-42500601:+|nuORF	REV__ENST00000451871.1_1_13:42499863-42500601:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	526.7726440429688	2	526.772188	1051.52982	0.10182	5.3634E-05	1.4083	0.00074187	1.5102	0.00079551	526.7728152822463	35.953	0.27877	35.953	35.855	36.134	0					11	7	2	0	0	0	0.6088	1	13521	13521		47.657	3.5405	1	236620	+		50626	19312	33447	33589	51277	51277					0.006119645752278302
YRTTLLIQ	8	Unmodified	_YRTTLLIQ_					0	0	0			REV__APAF1|p.D266Y|1|0.26|ENSG00000120868|chr12:98662541-98662541|G/T|missense_variant	REV__APAF1|p.D266Y|1|0.26|ENSG00000120868|chr12:98662541-98662541|G/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.29754638671875	2	504.297842	1006.58113	0.6476	0.00032659	-0.48581	-0.00024499	0.16179	8.1592E-05	504.2976121005385	20.73	1.0363	20.73	20.433	21.469	0					58	32	3	0	0	0	0.57171	1	5582	5582		52.937	1.6012	1	122570	+		50627	12178	33448	33590	51278	51278					0.07810333339955378
YRTTLLIQ	8	Unmodified	_YRTTLLIQ_					0	0	0			REV__APAF1|p.D266Y|1|0.26|ENSG00000120868|chr12:98662541-98662541|G/T|missense_variant	REV__APAF1|p.D266Y|1|0.26|ENSG00000120868|chr12:98662541-98662541|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	504.29779052734375	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.207	1	50.207	49.707	50.707	0								0	0	0	1.7419	1	18862	18862		44.117	3.3386	1		+		50628	12178	33448	33590	51279	51279					0.07810333339955378
YRTTLLIQ	8	Unmodified	_YRTTLLIQ_					0	0	0			REV__APAF1|p.D266Y|1|0.26|ENSG00000120868|chr12:98662541-98662541|G/T|missense_variant	REV__APAF1|p.D266Y|1|0.26|ENSG00000120868|chr12:98662541-98662541|G/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	504.29791259765625	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.199	1	25.199	24.699	25.699	0								0	0	0	1.7419	1	7976	7976		37.159	10.363	1		+		50629	12178	33448	33590	51280	51280					0.07810333339955378
YRTVAIAD	8	Unmodified	_YRTVAIAD_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	454.7454833984375	2	454.745442	907.476331	2.5037	0.0011385	-0.17942	-8.1591E-05	2.3242	0.0010569	454.74498436641215	37.969	0.62682	37.969	37.674	38.3	0					20	13	2	0	0	0	0.37144	1	14896	14896		74.255	0	1	716560	+		50630	15865	33449	33591	51281	51281					0.018892118633516475
YRVLASALF	9	Unmodified	_YRVLASALF_					0	0	0		ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ANO9|p.D688Ifs*44|1|0.15|ENSG00000185101|chr11:418789-418789|G/-|frameshift_variant;ENSG00000185101|ENST00000332826|ANO9;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	520.2992553710938	2	520.300384	1038.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.243	1	44.243	43.743	44.743	0								0	0	0	0.28666	1	17240	17240		23.042	0	1				50631	167	33450	33592	51282	51282					0.06846637202556849
YRVVSTFGVV	10	Unmodified	_YRVVSTFGVV_					0	0	0		CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	563.8182373046875	2	563.816399	1125.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.069	1	27.069	26.569	27.569	0								0	0	0	0.39264	1	8807	8807		35.618	6.4482	1				50632	508	33451	33593	51283	51283					0.060460048857066795
YRYLVLTP	8	Unmodified	_YRYLVLTP_					0	0	0			REV__ENST00000360639.6_1_15:75498583-75498691:+|nuORF	REV__ENST00000360639.6_1_15:75498583-75498691:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	342.19879150390625	3	342.199049	1023.57532	0.37713	0.00012905	-0.78363	-0.00026816	-0.4065	-0.0001391	342.19864146354075	25.136	0.1449	25.136	25.052	25.197	0					8	4	2	0	0	0	0.78999	1	7528	7528		23.042	6.5693	1	56905	+		50633	18557	33452	33594	51284	51284					0.06447234828260662
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.2196044921875	2	434.219591	866.42463	0.2041	8.8624E-05	-0.5484	-0.00023813	-0.3443	-0.0001495	434.21935563777623	16.477	0.10361	16.477	16.411	16.514	0					8	3	3	0	0	0	0.047855	1	3753	3753		96.034	37.252	1	291260			50634	7304	33453	33595	51285	51285					-0.013925318305382461
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.2196350097656	2	434.219591	866.42463	0.69684	0.00030258	-0.80442	-0.00034929	-0.10758	-4.6712E-05	434.21928502333935	16.744	0.20828	16.744	16.662	16.87	0					12	5	3	0	0	0	0.015496	1	4608	4608		129.42	41.667	1	2646900			50635	7304	33453	33595	51286	51286					-0.013925318305382461
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.2198486328125	2	434.219591	866.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.508	1	16.508	16.008	17.008	0								0	0	0	0.29356	1	3976	3976		36.447	1.246	1				50636	7304	33453	33595	51287	51287					-0.013925318305382461
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.2196350097656	2	434.219591	866.42463	-0.45002	-0.00019541	0.5346	0.00023214	0.084581	3.6727E-05	434.21982130141214	16.688	0.11471	16.688	16.63	16.744	0					4	2	2	0	0	0	0.18416	1	4828	4828		63.534	6.8128	1	572090			50637	7304	33453	33595	51288	51288					-0.013925318305382461
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	434.21954345703125	2	434.219591	866.42463	0.88263	0.00038326	-1.1966	-0.00051957	-0.31393	-0.00013631	434.21903992666375	16.672	0.15678	16.672	16.613	16.769	0					5	3	2	0	0	0	0.14578	1	4825	4825		68.846	12.125	1	673970			50638	7304	33453	33595	51289	51289					-0.013925318305382461
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	434.2192077636719	2	434.219591	866.42463	0.22062	9.5797E-05	0.21165	9.1903E-05	0.43227	0.0001877	434.21964988798186	16.535	0.1317	16.535	16.451	16.583	0					5	3	2	0	0	0	0.037924	1	3933	3933		101.25	44.532	1	173740			50639	7304	33453	33595	51290	51290					-0.013925318305382461
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.2195129394531	2	434.219591	866.42463	-0.51293	-0.00022272	0.32266	0.00014011	-0.19027	-8.2617E-05	434.2197203692578	16.705	0.30719	16.705	16.6	16.907	0					15	6	4	0	0	0	0.095583	1	4689	4689		80.455	14.025	1	1884000			50640	7304	33453	33595	51291	51291					-0.013925318305382461
YSAARSAAA	9	Unmodified	_YSAARSAAA_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	434.2197265625	2	434.219591	866.42463	0.83923	0.00036441	-0.6125	-0.00026596	0.22673	9.8451E-05	434.2192910595246	16.689	0.2615	16.689	16.583	16.844	0					8	5	2	0	0	0	0.076532	1	4682	4682		85.862	27.08	1	2079000			50641	7304	33453	33595	51292	51292					-0.013925318305382461
YSAQNNLG	8	Unmodified	_YSAQNNLG_					0	0	0			REV__CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant	REV__CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	433.7052917480469	2	433.703774	865.392996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.443	1	16.443	15.943	16.943	0								0	0	0	1.7419	1	3742	3742		25.45	2.4077	1		+		50642	12412	33454	33596	51293	51293					-0.04508524584480256
YSAQSAVD	8	Unmodified	_YSAQSAVD_					0	0	0		ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	420.6900329589844	2	420.690333	839.366112	1.0544	0.00044356	-1.1486	-0.00048321	-0.094251	-3.9651E-05	420.68979692140067	23.675	0.51224	23.675	23.418	23.931	0					24	10	4	0	0	0	0.68432	1	8046	8046		35.618	6.4687	1	2491300			50643	6646	33455	33597	51294	51294					-0.0599963319566541
YSAVERNNL	9	Unmodified	_YSAVERNNL_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.2719116210938	2	533.269813	1064.52507	3.3955	0.0018107	0.22344	0.00011915	3.619	0.0019299	533.2699749978963	37.497	0.11644	37.497	37.434	37.55	0					6	2	3	0	0	0	0.30951	1	14678	14678		49.442	0	1	228870			50644	1875	33456	33598	51295	51295					-0.004609195675357114
YSCDHNTSL	9	Unmodified	_YSCDHNTSL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	520.2119750976562	2	520.211106	1038.40766	0.64476	0.00033541	0.81155	0.00042218	1.4563	0.00075759	520.211436533347	25.06	0.31647	25.06	24.909	25.226	0					13	9	2	0	0	0	0.28897	1	7450	7450		51.193	5.2204	1	58981			50645	11514	33457	33599	51296	51296					-0.11000820498657049
YSCQDCHF	8	Unmodified	_YSCQDCHF_					0	0	0			REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.67626953125	2	501.675845	1001.33714	0.037526	1.8826E-05	0.085156	4.272E-05	0.12268	6.1546E-05	501.676004499586	37.195	0.1886	37.195	37.095	37.284	0					7	5	2	0	0	0	0.73426	1	14534	14534		29.15	2.3535	1	58866	+		50646	19855	33458	33600	51297	51297					-0.16347817087955718
YSCVAHVKF	9	Unmodified	_YSCVAHVKF_					0	0	0			REV__tr|U7T475|U7T475_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00370PE=4SV=1	REV__tr|U7T475|U7T475_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00370PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2666015625	2	527.262945	1052.51134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.928	1	39.928	39.428	40.428	0								0	0	0	0.13137	1	15816	15816		64.207	3.2353	1		+		50647	22159	33459	33601	51298	51298					-0.012818686003129187
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	515.7465209960938	2	515.745639	1029.47673	-0.091391	-4.7134E-05	0.40697	0.00020989	0.31558	0.00016276	515.7459137399201	36.473	0.097687	36.473	36.396	36.494	0					9	5	2	0	0	0	0.043797	1	12355	12355		97.473	12.113	1	60741			50648	2284	33460	33602	51299	51299					-0.036834132074318404
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	515.7459716796875	2	515.745639	1029.47673	1.4323	0.0007387	-0.96299	-0.00049666	0.46931	0.00024204	515.7450465099624	36.616	0.24463	36.616	36.532	36.777	0					16	7	3	0	0	0	0.0031383	1	14276	14276		167.82	102.02	1	454510			50649	2284	33460	33602	51300	51300					-0.036834132074318404
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	515.7471313476562	2	515.745639	1029.47673	0.73983	0.00038156	0.78443	0.00040457	1.5243	0.00078613	515.7457633209062	36.44	0.11878	36.44	36.368	36.487	0					8	5	2	0	0	0	0.25109	1	13055	13055		55.504	9.5523	1	42643			50650	2284	33460	33602	51301	51301					-0.036834132074318404
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7455444335938	2	515.745639	1029.47673	1.5094	0.00077844	-1.408	-0.00072618	0.10134	5.2267E-05	515.744911991584	36.571	0.31624	36.571	36.462	36.778	0					10	6	2	0	0	0	0.015835	1	14235	14235		128.86	74.085	1	734270			50651	2284	33460	33602	51302	51302					-0.036834132074318404
YSDDTLKQL	9	Unmodified	_YSDDTLKQL_					0	0	0		ENST00000585004.5_1_18:688572-706535:-|nuORF;nc|ENSG00000132199|Q7L5Y1-6|ENOSF1;nc|ENSG00000132199|Q7L5Y1-2|ENOSF1;ENST00000578651.5_1_18:683014-712587:-|nuORF;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1	ENST00000585004.5_1_18:688572-706535:-|nuORF	ENST00000585004.5_1_18:688572-706535:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	541.7716064453125	2	541.771854	1081.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.25	1	34.25	33.75	34.75	0								0	0	0	0.24544	1	11541	11541		44.377	5.1244	1				50652	3767	33461	33603	51303	51303					-0.0083487486449485
YSDDTLKQL	9	Unmodified	_YSDDTLKQL_					0	0	0		ENST00000585004.5_1_18:688572-706535:-|nuORF;nc|ENSG00000132199|Q7L5Y1-6|ENOSF1;nc|ENSG00000132199|Q7L5Y1-2|ENOSF1;ENST00000578651.5_1_18:683014-712587:-|nuORF;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1	ENST00000585004.5_1_18:688572-706535:-|nuORF	ENST00000585004.5_1_18:688572-706535:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	541.7716674804688	2	541.771854	1081.52915	0.31369	0.00016995	-1.4019	-0.00075953	-1.0883	-0.00058959	541.7706373554852	34.407	0.20672	34.407	34.323	34.53	0					8	5	2	0	0	0	0.18416	1	13249	13249		63.534	8.7575	1	131970			50653	3767	33461	33603	51304	51304					-0.0083487486449485
YSEAWWALG	9	Unmodified	_YSEAWWALG_					0	0	0			REV__TRAF3IP3|p.R14W|1|0.16|ENSG00000009790|chr1:209760079-209760079|C/T|missense_variant	REV__TRAF3IP3|p.R14W|1|0.16|ENSG00000009790|chr1:209760079-209760079|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	541.7526245117188	2	541.750724	1081.4869	3.5468	0.0019215	0.096761	5.242E-05	3.6436	0.0019739	541.7506967127475	49.609	0.21396	49.609	49.544	49.758	0					12	10	2	0	0	0	0.45358	1	19618	19618		37.159	1.5408	1	130360	+		50654	22228	33462	33604	51305	51305					-0.05058805482212847
YSELDSVGHS	10	Unmodified	_YSELDSVGHS_					0	0	0			REV__ENSG00000111913|ENST00000643898|RIPOR2	REV__ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	547.2490234375	2	547.24346	1092.47237	3.8264	0.002094	3.5265	0.0019298	7.3529	0.0040238	547.246629988092	49.856	0.29726	49.856	49.751	50.049	0					44	12	5	0	0	0	0.51121	1	19677	19677		44.117	1.7207	1	895740	+		50655	13987	33463	33605	51306	51306					-0.07016922420984884
YSFFMPAAK	9	Unmodified	_YSFFMPAAK_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.2611083984375	2	531.259871	1060.50519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.177	1	43.177	42.677	43.677	0								0	0	0	0.28996	1	17274	17274		37.159	11.585	1				50656	3687	33464	33606	51307	51307					-0.02264386831848242
YSFFMPAAK	9	Unmodified	_YSFFMPAAK_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	531.7626953125	2	531.259871	1060.50519	1.6871	0.0008963	0.61406	0.00032623	2.3012	0.0012225	531.2598799276744	43.133	0.22379	43.133	43.067	43.291	0					9	7	2	0	0	0	0.16002	1	17257	17257		66.429	18.514	1	67157			50657	3687	33464	33606	51308	51308					-0.02264386831848242
YSGLKAKIQ	9	Unmodified	_YSGLKAKIQ_					0	0	0		ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant;ENSG00000163867|ENST00000357182|ZMYM6;nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	504.2976989746094	2	504.297842	1006.58113	0.6476	0.00032659	-0.48581	-0.00024499	0.16179	8.1592E-05	504.2976121005385	20.73	1.0363	20.73	20.433	21.469	0					58	32	3	0	0	0	0.21263	1	5738	5738		60.118	1.3363	1	122570			50658	5614	33465	33607	51309	51309					0.0781033333993264
YSHPVTMP	8	Unmodified	_YSHPVTMP_					0	0	0		nc|ENSG00000271605|Q7Z6M3-3|MILR1;ENSG00000271605|ENST00000619286|MILR1	nc|ENSG00000271605|Q7Z6M3-3|MILR1	nc|ENSG00000271605|Q7Z6M3-3|MILR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.2220153808594	2	466.220746	930.426938	2.6317	0.001227	0.18995	8.8559E-05	2.8217	0.0013155	466.221059467254	40.322	0.89661	40.322	39.852	40.748	0					46	20	3	0	0	0	0.70055	1	16110	16110		33.516	0	1	195250			50659	8086	33466	33608	51310	51310					-0.04105819417065959
YSHSSSSL	8	Unmodified	_YSHSSSSL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	434.1955261230469	2	434.195782	866.377011	-0.2663	-0.00011563	-0.095505	-4.1468E-05	-0.36181	-0.00015709	434.19565664482616	18.752	0.17935	18.752	18.646	18.826	0					11	5	3	0	0	0	0.29152	1	4708	4708		85.359	85.359	1	752700			50660	4341	33467	33609	51311	51311					-0.061522308213625365
YSHSSSSL	8	Unmodified	_YSHSSSSL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	434.1955871582031	2	434.195782	866.377011	-0.44206	-0.00019194	-0.055424	-2.4065E-05	-0.49748	-0.00021601	434.19571292309115	19.04	0.40313	19.04	18.953	19.356	0					21	9	4	0	0	0	0.22885	1	5679	5679		123.99	123.99	1	2551100			50661	4341	33467	33609	51312	51312					-0.061522308213625365
YSHSSSSL	8	Unmodified	_YSHSSSSL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	434.1957092285156	2	434.195782	866.377011	-0.8063	-0.00035009	0.41119	0.00017853	-0.39512	-0.00017156	434.19591895766024	18.736	0.31748	18.736	18.653	18.97	0					22	10	4	0	0	0	0.24498	1	4940	4940		110.34	27.05	1	1108900			50662	4341	33467	33609	51313	51313					-0.061522308213625365
YSHTGRII	8	Unmodified	_YSHTGRII_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	473.7589111328125	2	473.758884	945.503215	0.69073	0.00032724	-0.28342	-0.00013427	0.40731	0.00019297	473.75865173901417	22.458	0.1035	22.458	22.398	22.501	0					6	2	3	0	0	0	0.50061	1	7306	7306		60.118	5.3419	1	119070			50663	2821	33468	33610	51314	51314					0.028283204745775947
YSHVIQKL	8	Unmodified	_YSHVIQKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	494.2844543457031	2	494.284734	986.554916	-0.75241	-0.0003719	0.36418	0.00018001	-0.38823	-0.0001919	494.2848193873534	27.547	0.21061	27.547	27.439	27.649	0					6	4	2	0	0	0	0.24806	1	10003	10003		104.75	16.992	1	129230			50664	3965	33469	33611	51315	51315					0.0611006416845612
YSIAGSAAFL	10	Unmodified	_YSIAGSAAFL_					0	0	0			REV__nc|ENSG00000179168|Q86UU5-2|GGN	REV__nc|ENSG00000179168|Q86UU5-2|GGN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	500.2607116699219	2	500.260925	998.507297	0.90004	0.00045025	-1.1455	-0.00057305	-0.24546	-0.0001228	500.26044382381946	38.489	0.49105	38.489	38.248	38.739	0					38	17	3	0	0	0	0.47859	1	15044	15044		47.657	14.845	1	262470	+		50665	16768	33470	33612	51316	51316					0.007983651776157785
YSKSSGALHKR	11	Unmodified	_YSKSSGALHKR_					0	0	0		MAP10|p.P480del|1|0.11|ENSG00000212916|chr1:232806459-232806461|CTC/-|inframe_deletion	MAP10|p.P480del|1|0.11|ENSG00000212916|chr1:232806459-232806461|CTC/-|inframe_deletion	MAP10|p.P480del|1|0.11|ENSG00000212916|chr1:232806459-232806461|CTC/-|inframe_deletion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	617.3369140625	2	617.338561	1232.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.683	1	29.683	29.183	30.183	0								0	0	0	0.40498	1	10903	10903		47.228	33.774	1				50666	11345	33471	33613	51317	51317					0.05554409031879004
YSLALNYS	8	Unmodified	_YSLALNYS_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	466.1475524902344	2	465.732	929.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.077	1	46.077	45.577	46.577	0								0	0	0	1.7419	1	18446	18446		35.618	5.1146	1		+		50667	13181	33472	33614	51318	51318					-0.018098967478181294
YSLDHISSL	9	Unmodified	_YSLDHISSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.761962890625	2	517.761289	1033.50803	0.047637	2.4665E-05	1.5307	0.00079256	1.5784	0.00081722	517.7624146659658	41.184	0.34935	41.184	40.978	41.327	0					21	16	2	0	0	0	0.1115	1	15654	15654		76.774	21.27	1	209270			50668	1145	33473	33615	51319	51319					-0.007388401733123828
YSLDHISSL	9	Unmodified	_YSLDHISSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7616577148438	2	517.761289	1033.50803	3.3302	0.0017242	3.0755	0.0015924	6.4057	0.0033166	517.7610189428882	41.055	0.7141	41.055	40.643	41.357	0					16	13	2	0	0	0	0.023074	1	16329	16329		116.9	37.453	1	591010			50669	1145	33473	33615	51320	51320					-0.007388401733123828
YSLGREQVA	9	Unmodified	_YSLGREQVA_					0	0	0		OR8H2|p.D271E|1|0.19|ENSG00000181767|chr11:56105855-56105855|T/A|missense_variant	OR8H2|p.D271E|1|0.19|ENSG00000181767|chr11:56105855-56105855|T/A|missense_variant	OR8H2|p.D271E|1|0.19|ENSG00000181767|chr11:56105855-56105855|T/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	511.7677307128906	2	511.766906	1021.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.614	1	20.614	20.114	21.114	0								0	0	0	0.21054	1	5787	5787		49.442	8.8689	1				50670	11885	33474	33616	51321	51321					0.009359819208043518
YSLHTEAVW	9	Unmodified	_YSLHTEAVW_					0	0	0		WDR25|p.R296W|1|0.11|ENSG00000176473|chr14:100468084-100468084|C/T|missense_variant	WDR25|p.R296W|1|0.11|ENSG00000176473|chr14:100468084-100468084|C/T|missense_variant	WDR25|p.R296W|1|0.11|ENSG00000176473|chr14:100468084-100468084|C/T|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.7713012695312	2	553.269281	1104.52401	3.6423	0.0020152	-2.7653	-0.0015299	0.87707	0.00048525	553.2677925019792	48.077	0.21785	48.077	47.95	48.167	0					20	11	2	0	0	0	0.43426	1	19127	19127		38.806	5.2906	1	93481			50671	23112	33475	33617	51322	51322					-0.02407133936435457
YSLNFQKAR	9	Unmodified	_YSLNFQKAR_					0	0	0		nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	563.8040771484375	2	563.803823	1125.59309	1.7478	0.00098541	-1.4208	-0.00080104	0.32702	0.00018437	563.803125220642	28.302	0.7169	28.302	28.143	28.86	0					38	14	4	0	0	0	0.35045	1	10225	10225		45.952	1.4209	1	1857400			50672	11741	33476	33618	51323	51323					0.035319500831292316
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	483.7662658691406	2	483.766374	965.518196	0.05146	2.4895E-05	0.010529	5.0935E-06	0.061989	2.9988E-05	483.766351981924	35.862	0.14091	35.862	35.815	35.956	0					12	7	2	0	0	0	0.32597	1	11765	11765		79.713	13.283	1	80648			50673	3140	33477	33619	51324	51324					0.03405767551907957
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	483.7660217285156	2	483.766374	965.518196	-0.1764	-8.5338E-05	-0.79269	-0.00038347	-0.96909	-0.00046881	483.76611280195164	36.169	0.31547	36.169	35.969	36.285	0					16	8	3	0	0	0	0.241	1	13623	13623		115.49	33.254	1	660980			50674	3140	33477	33619	51325	51325					0.03405767551907957
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	483.7669982910156	2	483.766374	965.518196	-1.2582	-0.00060866	0.78169	0.00037816	-0.47648	-0.00023051	483.7673124789645	35.947	0.29699	35.947	35.837	36.134	0					23	13	3	0	0	0	0.48092	1	12157	12157		62.107	10.772	1	132710			50675	3140	33477	33619	51326	51326					0.03405767551907957
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	483.76605224609375	2	483.766374	965.518196	0.6731	0.00032563	-0.40232	-0.00019463	0.27079	0.000131	483.76660035191094	36.144	0.5105	36.144	35.884	36.394	0					31	15	4	0	0	0	0.24433	1	14047	14047		136.27	35.057	1	1018400			50676	3140	33477	33619	51327	51327					0.03405767551907957
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.7668762207031	2	483.766374	965.518196	-0.26748	-0.0001294	0.79266	0.00038346	0.52518	0.00025406	483.76705115706613	35.935	0.075535	35.935	35.887	35.962	0					6	3	2	0	0	0	0.50061	1	12828	12828		60.118	7.1816	1	63565			50677	3140	33477	33619	51328	51328					0.03405767551907957
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	483.765869140625	2	483.766374	965.518196	-2.918	-0.0014116	1.875	0.00090704	-1.043	-0.00050457	483.76751617764074	35.933	0.18504	35.933	35.851	36.036	0					13	7	2	0	0	0	0.28444	1	12822	12822		87.696	13.441	1	150310			50678	3140	33477	33619	51329	51329					0.03405767551907957
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	483.7660827636719	2	483.766374	965.518196	0.87204	0.00042186	0.55876	0.00027031	1.4308	0.00069217	483.76688063814737	36.12	0.51369	36.12	35.865	36.379	0					20	10	3	0	0	0	0.22872	1	13995	13995		124.08	35.437	1	839740			50679	3140	33477	33619	51330	51330					0.03405767551907957
YSMAVLKPGA	10	Unmodified	_YSMAVLKPGA_					0	0	0		ENST00000382496.9_1_5:9379939-9380047:-|nuORF	ENST00000382496.9_1_5:9379939-9380047:-|nuORF	ENST00000382496.9_1_5:9379939-9380047:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	518.7786254882812	2	518.778428	1035.5423	1.5882	0.00082391	-2.1227	-0.0011012	-0.5345	-0.00027729	518.7776990342783	37.541	0.45571	37.541	37.252	37.708	0					14	9	2	0	0	0	0.63224	1	14707	14707		30.318	0.47618	1	85487			50680	9124	33478	33620	51331	51331					0.02595284713925139
YSMIPPAQQ	9	Unmodified	_YSMIPPAQQ_					0	0	0		ENST00000546843.2_1_12:57662084-57662234:-|nuORF;ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2;R3HDM2|p.P672Lfs*34|2|0.2|ENSG00000179912|chr12:57266805-57266805|G/-|frameshift_variant;R3HDM2|p.D913Gfs*7|1|0.51|ENSG00000179912|chr12:57254966-57254967|-/C|frameshift_variant;R3HDM2|p.D913Tfs*41|1|0.42|ENSG00000179912|chr12:57254967-57254967|C/-|frameshift_variant;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2	ENST00000546843.2_1_12:57662084-57662234:-|nuORF	ENST00000546843.2_1_12:57662084-57662234:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	517.7531127929688	2	517.75241	1033.49027	0.23463	0.00012148	1.3689	0.00070875	1.6035	0.00083023	517.7529419124611	37.645	0.30256	37.645	37.518	37.821	0					10	6	2	0	0	0	0.39215	1	14758	14758		42.396	3.59	1	97622			50681	6785	33479	33621	51332	51332					-0.025138786998468277
YSMPSTHAM	9	Unmodified	_YSMPSTHAM_					0	0	0		SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant;ENSG00000126821|ENST00000247225|SGPP1	SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	512.7151489257812	2	512.71497	1023.41539	0.0093921	4.8155E-06	-0.40394	-0.00020711	-0.39455	-0.00020229	512.7151712471127	30.763	0.36254	30.763	30.514	30.877	0					21	8	4	0	0	0	0.26904	1	11148	11148		53.351	7.3995	1	367670			50682	3490	33480	33622	51333	51333					-0.09538384502707231
YSMPSTHAM	9	Unmodified	_YSMPSTHAM_					0	0	0		SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant;ENSG00000126821|ENST00000247225|SGPP1	SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	512.7151489257812	2	512.71497	1023.41539	1.2737	0.00065306	-2.0172	-0.0010342	-0.74347	-0.00038119	512.7143582938781	30.773	0.41216	30.773	30.496	30.909	0					31	9	4	0	0	0	0.087582	1	11508	11508		82.305	28.954	1	1159700			50683	3490	33480	33622	51334	51334					-0.09538384502707231
YSMPSTHAM	9	Unmodified	_YSMPSTHAM_					0	0	0		SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant;ENSG00000126821|ENST00000247225|SGPP1	SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	512.7151489257812	2	512.71497	1023.41539	1.4354	0.00073593	-1.9862	-0.0010183	-0.55078	-0.0002824	512.7143175630331	30.725	0.50418	30.725	30.425	30.929	0					31	10	4	0	0	0	0.062676	1	11396	11396		90.777	30.483	1	1415800			50684	3490	33480	33622	51335	51335					-0.09538384502707231
YSPEGHVL	8	Unmodified	_YSPEGHVL_					0	0	0		INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant;INF2|p.P472Qfs*86|1|0.43|ENSG00000203485|chr14:104707676-104707676|C/-|frameshift_variant;INF2|p.P438Lfs*120|1|1.0|ENSG00000203485|chr14:104707576-104707576|C/-|frameshift_variant;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	451.22393798828125	2	451.224342	900.434132	-0.5	-0.00022561	0.20801	9.3859E-05	-0.29199	-0.00013175	451.2243800578791	28.926	0.25255	28.926	28.835	29.087	0					16	6	3	0	0	0	0.59411	1	10268	10268		50.025	9.4519	1	638220			50685	7649	33481	33623	51336	51336					-0.020067635450004673
YSPEGHVL	8	Unmodified	_YSPEGHVL_					0	0	0		INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant;INF2|p.P472Qfs*86|1|0.43|ENSG00000203485|chr14:104707676-104707676|C/-|frameshift_variant;INF2|p.P438Lfs*120|1|1.0|ENSG00000203485|chr14:104707576-104707576|C/-|frameshift_variant;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	451.224365234375	2	451.224342	900.434132	-1.19	-0.00053697	0.76576	0.00034553	-0.42428	-0.00019145	451.2246528749024	28.69	0.29011	28.69	28.598	28.889	0					27	11	3	0	0	0	0.70055	1	9250	9250		33.516	1.5607	1	511290			50686	7649	33481	33623	51337	51337					-0.020067635450004673
YSPEGHVL	8	Unmodified	_YSPEGHVL_					0	0	0		INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant;INF2|p.P472Qfs*86|1|0.43|ENSG00000203485|chr14:104707676-104707676|C/-|frameshift_variant;INF2|p.P438Lfs*120|1|1.0|ENSG00000203485|chr14:104707576-104707576|C/-|frameshift_variant;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	451.2239685058594	2	451.224342	900.434132	0.70238	0.00031693	-0.37305	-0.00016833	0.32933	0.0001486	451.2241892089205	28.968	0.66151	28.968	28.812	29.473	0					30	14	4	0	0	0	0.59411	1	10642	10642		50.025	9.4519	1	3535000			50687	7649	33481	33623	51338	51338					-0.020067635450004673
YSPSIHTP	8	Unmodified	_YSPSIHTP_					0	0	0			REV__ENST00000527370.5_1_11:67264693-67266053:-|nuORF	REV__ENST00000527370.5_1_11:67264693-67266053:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	451.22412109375	2	451.224342	900.434132	-0.13762	-6.2099E-05	-0.37195	-0.00016783	-0.50957	-0.00022993	451.22414911552676	28.755	0.52112	28.755	28.599	29.12	0					23	13	2	0	0	0	0.7126	1	9560	9560		31.955	5.1588	1	462750	+		50688	20009	33482	33624	51339	51339					-0.020067635450004673
YSPTSKAL	8	Unmodified	_YSPTSKAL_					0	0	0		TBC1D14|p.L519*|1|0.21|ENSG00000132405|chr4:7010689-7010689|T/-|frameshift_variant;TBC1D14|p.R544*|1|0.35|ENSG00000132405|chr4:7010757-7010758|-/T|frameshift_variant;ENSG00000132405|ENST00000409757|TBC1D14	TBC1D14|p.L519*|1|0.21|ENSG00000132405|chr4:7010689-7010689|T/-|frameshift_variant	TBC1D14|p.L519*|1|0.21|ENSG00000132405|chr4:7010689-7010689|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	433.734375	2	433.734543	865.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.979	1	23.979	23.479	24.479	0								0	0	0	1.7419	1	8014	8014		58.782	5.4305	1				50689	3785	33483	33625	51340	51340					0.0164240711480943
YSRQVPIPE	9	Unmodified	_YSRQVPIPE_					0	0	0		ENST00000522404.5_1_5:71537397-71616033:-|nuORF	ENST00000522404.5_1_5:71537397-71616033:-|nuORF	ENST00000522404.5_1_5:71537397-71616033:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	544.7939453125	2	544.790381	1087.56621	3.7062	0.0020191	0.96951	0.00052818	4.6757	0.0025473	544.7908624305975	47.607	0.50747	47.607	47.511	48.018	0					60	27	3	0	0	0	0.44593	1	18973	18973		37.812	1.3648	1	623230			50690	10330	33484	33626	51341	51341					0.025928414719373905
YSRSLLRV	8	Unmodified	_YSRSLLRV_					0	0	0		TAF3|p.S4T|1|0.05|ENSG00000165632|chr10:7818720-7818720|G/C|missense_variant;ENSG00000165632|ENST00000344293|TAF3	TAF3|p.S4T|1|0.05|ENSG00000165632|chr10:7818720-7818720|G/C|missense_variant	TAF3|p.S4T|1|0.05|ENSG00000165632|chr10:7818720-7818720|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	331.8660583496094	3	331.866181	992.576714	0.26706	8.8629E-05	-0.5148	-0.00017085	-0.24774	-8.2216E-05	331.865973633173	32.343	0.30968	32.343	32.271	32.581	0					24	13	2	0	0	0	0.71588	1	10434	10434		31.53	1.2121	1	821090			50691	5814	33485	33627	51342	51342					0.0801286891704649
YSRSLLRV	8	Unmodified	_YSRSLLRV_					0	0	0		TAF3|p.S4T|1|0.05|ENSG00000165632|chr10:7818720-7818720|G/C|missense_variant;ENSG00000165632|ENST00000344293|TAF3	TAF3|p.S4T|1|0.05|ENSG00000165632|chr10:7818720-7818720|G/C|missense_variant	TAF3|p.S4T|1|0.05|ENSG00000165632|chr10:7818720-7818720|G/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	331.8663024902344	3	331.866181	992.576714	-0.70266	-0.00023319	0.66949	0.00022218	-0.033171	-1.1008E-05	331.86649616623725	32.412	0.2375	32.412	32.31	32.547	0					19	9	3	0	0	0	0.71588	1	10796	10796		31.53	1.2121	1	170390			50692	5814	33485	33627	51343	51343					0.0801286891704649
YSSAQALSTF	10	Unmodified	_YSSAQALSTF_					0	0	0		ENST00000216121.11_1_22:29951692-29951776:-|nuORF	ENST00000216121.11_1_22:29951692-29951776:-|nuORF	ENST00000216121.11_1_22:29951692-29951776:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.7589721679688	2	537.758746	1073.50294	1.8918	0.0010174	-0.94911	-0.00051039	0.94273	0.00050696	537.7581799876193	30.191	0.32337	30.191	30.092	30.416	0					22	7	4	0	0	0	0.39566	1	11306	11306		56.721	0	1	3571500			50693	8158	33486	33628	51344	51344					-0.030871440359533153
YSSQCKID	8	Carbamidomethyl (C)	_YSSQC(Carbamidomethyl (C))KID_	YSSQC(1)KID		YSSQC(82)KID		0	1	0		tr|U7SUK2|U7SUK2_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01199PE=4SV=1	tr|U7SUK2|U7SUK2_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01199PE=4SV=1	tr|U7SUK2|U7SUK2_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01199PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	500.72283935546875	2	500.723849	999.433146	-2.1248	-0.001064	-1.0522	-0.00052684	-3.177	-0.0015908	500.7233463920991	39.002	0.37144	39.002	38.884	39.256	0					44	19	4	0	0	0	0.30437	1	13912	13912		82.305	13.518	1	618140			50694	22828	33487	33629	51345	51345	756				-0.06659345976208897
YSSSDSNLLSF	11	Unmodified	_YSSSDSNLLSF_					0	0	0			REV__nc|ENSG00000258628|A8MT19|RHPN2P1	REV__nc|ENSG00000258628|A8MT19|RHPN2P1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	610.7796020507812	2	610.2775	1218.54045	-0.73547	-0.00044884	-0.61942	-0.00037802	-1.3549	-0.00082686	610.779539677766	24.781	0.26117	24.781	24.602	24.864	0					12	6	4	0	0	0	0.46959	1	8397	8397		46.457	0.48454	1	456190	+		50695	21240	33488	33630	51346	51346					-0.060080975609935194
YSTGHSPAL	9	Unmodified	_YSTGHSPAL_					0	0	0		PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	466.7265930175781	2	466.727249	931.439946	-0.4372	-0.00020405	0.18587	8.6749E-05	-0.25133	-0.0001173	466.7272255641905	24.729	0.18407	24.729	24.644	24.828	0					8	5	2	0	0	0	0.37197	1	7345	7345		44.117	0	1	39802			50696	3477	33489	33631	51347	51347					-0.028516650333358484
YSTGHSPAL	9	Unmodified	_YSTGHSPAL_					0	0	0		PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	466.72705078125	2	466.727249	931.439946	-0.66272	-0.00030931	0.076577	3.5741E-05	-0.58614	-0.00027357	466.72729115468917	25.016	0.29567	25.016	24.852	25.148	0					17	7	4	0	0	0	0.062676	1	8500	8500		90.777	37.425	1	411310			50697	3477	33489	33631	51348	51348					-0.028516650333358484
YSTGHSPAL	9	Unmodified	_YSTGHSPAL_					0	0	0		PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	466.7271423339844	2	466.727249	931.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.88	1	24.88	24.38	25.38	0								0	0	0	0.28996	1	7827	7827		37.159	0	1				50698	3477	33489	33631	51349	51349					-0.028516650333358484
YSTSDVQFK	9	Unmodified	_YSTSDVQFK_					0	0	0			REV__tr|U7T561|U7T561_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00450PE=4SV=1	REV__tr|U7T561|U7T561_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00450PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	537.7592163085938	2	537.758746	1073.50294	0.78176	0.0004204	-0.12249	-6.5872E-05	0.65926	0.00035453	537.7585447930699	29.925	0.22609	29.925	29.836	30.062	0					19	8	3	0	0	0	0.098791	1	9479	9479		79.713	0	1	571180	+		50699	22171	33490	33632	51350	51350					-0.030871440359533153
YSVGSRPL	8	Unmodified	_YSVGSRPL_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	439.7400817871094	2	439.74016	877.465767	-1.0217	-0.00044928	3.6262	0.0015946	2.6045	0.0011453	439.7425504776122	28.01	0.3374	28.01	27.903	28.24	0					18	12	2	0	0	0	0.39125	1	9044	9044		71.877	20.542	1	89163			50700	3336	33491	33633	51351	51351					0.022132292089509065
YSVVSGNLMI	10	Unmodified	_YSVVSGNLMI_					0	0	0		ENSG00000204642|ENST00000259951|HLA-F	ENSG00000204642|ENST00000259951|HLA-F	ENSG00000204642|ENST00000259951|HLA-F	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	541.7835083007812	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.046	1	25.046	24.546	25.546	0								0	0	0	0.38322	1	7485	7485		35.618	4.0885	1				50701	7718	33492	33634	51352	51352					0.01026963505751155
YSWKTIDL	8	Unmodified	_YSWKTIDL_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-3|LY9	REV__nc|ENSG00000122224|Q9HBG7-3|LY9	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	513.271240234375	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.694	1	39.694	39.194	40.194	0								0	0	0	1.7419	1	13336	13336		49.442	6.5773	1		+		50702	21004	33493	33635	51353	51353					0.011666516946661432
YSYSILKPYK	10	Unmodified	_YSYSILKPYK_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	631.3450927734375	2	631.344989	1260.67542	3.1096	0.0019633	-2.8747	-0.0018149	0.23493	0.00014832	631.3437186861075	44.964	0.30389	44.964	44.851	45.155	0					23	12	3	0	0	0	0.50881	1	18004	18004		44.377	1.5129	1	371090	+		50703	15210	33494	33636	51354	51354					0.055514273714152296
YTAAGDAR	8	Unmodified	_YTAAGDAR_					0	0	0			REV__SPHK2|p.V492*|1|0.22|ENSG00000063176|chr19:48629277-48629277|C/-|frameshift_variant	REV__SPHK2|p.V492*|1|0.22|ENSG00000063176|chr19:48629277-48629277|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	412.6983337402344	2	412.698492	823.382431	1.0626	0.00043853	-0.9998	-0.00041262	0.062801	2.5918E-05	412.6979971595614	14.638	0.62625	14.638	14.267	14.893	0					19	13	3	0	0	0	0.61938	1	3832	3832		45.952	0	1	393420	+		50704	13096	33495	33637	51355	51355					-0.03632507238910421
YTAAILGPAAG	11	Unmodified	_YTAAILGPAAG_					0	0	0		nc|ENSG00000101187|Q96BD0-3|SLCO4A1;nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1	nc|ENSG00000101187|Q96BD0-3|SLCO4A1	nc|ENSG00000101187|Q96BD0-3|SLCO4A1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.77471923828125	2	502.7742	1003.53385	0.72269	0.00036335	0.21081	0.00010599	0.9335	0.00046934	502.7743554856977	24.576	0.34853	24.576	24.45	24.798	0					11	8	2	0	0	0	0.32407	1	8305	8305		60.972	5.4677	1	305240			50705	2099	33496	33638	51356	51356					0.032220540689422705
YTAGGIVFVI	10	Unmodified	_YTAGGIVFVI_					0	0	0			REV__ENST00000491789.1_1_1:150071171-150116971:+|nuORF	REV__ENST00000491789.1_1_1:150071171-150116971:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	520.2938232421875	2	520.294768	1038.57498	-1.35	-0.00070242	-1.9084	-0.00099292	-3.2584	-0.0016953	520.293636040103	36.7	0.18502	36.7	36.609	36.794	0					18	8	3	0	0	0	0.4943	1	13116	13116		45.952	5.1738	1	232180	+		50706	14870	33497	33639	51357	51357					0.05723815108422059
YTAPPLQSK	9	Unmodified	_YTAPPLQSK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	502.7742614746094	2	502.7742	1003.53385	0.98952	0.00049751	-1.0999	-0.00055299	-0.11035	-5.548E-05	502.77368989928624	24.502	0.66441	24.502	24.343	25.008	0					37	13	3	0	0	0	0.15593	1	8574	8574		59.931	1.1488	1	2354600			50707	5112	33498	33640	51358	51358					0.03222054068953639
YTAPPLQSK	9	Unmodified	_YTAPPLQSK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.7742004394531	2	502.7742	1003.53385	0.13334	6.7039E-05	0.0033533	1.6859E-06	0.13669	6.8725E-05	502.7741164418257	24.34	0.48764	24.34	24.172	24.66	0					25	11	3	0	0	0	0.11635	1	7551	7551		59.931	10.489	1	237100			50708	5112	33498	33640	51359	51359					0.03222054068953639
YTAPPLQSK	9	Unmodified	_YTAPPLQSK_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.77423095703125	2	502.7742	1003.53385	-2.06	-0.0010357	1.3157	0.0006615	-0.74435	-0.00037424	502.77502673358254	24.352	0.53373	24.352	24.155	24.689	0					29	12	4	0	0	0	0.30257	1	7547	7547		42.864	0	1	328180			50709	5112	33498	33640	51360	51360					0.03222054068953639
YTAYDRAY	8	Unmodified	_YTAYDRAY_					0	0	0		SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant;ENSG00000102359|ENST00000373004|SRPX2	SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	511.7339782714844	2	511.732532	1021.45051	1.4104	0.00072177	0.44947	0.00023001	1.8599	0.00095178	512.2343705669686	37.26	0.21228	37.26	37.154	37.366	0					8	4	3	0	0	0	0.60719	1	14568	14568		47.916	0.25827	1	262590			50710	2168	33499	33641	51361	51361					-0.05935682378913043
YTDRLGAM	8	Unmodified	_YTDRLGAM_					0	0	0			REV__ENST00000472216.2_1_2:169741394-169769722:-|nuORF	REV__ENST00000472216.2_1_2:169741394-169769722:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	463.7234191894531	2	463.723652	925.432752	-1.0283	-0.00047685	0.14649	6.7932E-05	-0.88182	-0.00040892	463.72378546957435	34.085	0.19214	34.085	33.981	34.173	0					10	4	3	0	0	0	0.64096	1	13096	13096		42.474	5.3154	1	226410	+		50711	15502	33500	33642	51362	51362					-0.032947209053986626
YTEMSELK	8	Unmodified	_YTEMSELK_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	500.7353515625	2	500.736425	999.458298	-0.14045	-7.0328E-05	-1.2304	-0.0006161	-1.3708	-0.00068643	500.73566457387403	11.869	0.92038	11.869	11.766	12.686	0					47	31	2	0	0	0	0.72381	1	2357	2357		30.504	5.0535	1	6476000	+		50712	14860	33501	33643	51363	51363					-0.04145291173631449
YTFFSARL	8	Unmodified	_YTFFSARL_					0	0	0		ENST00000504771.2_1_5:118691243-118691579:+|nuORF	ENST00000504771.2_1_5:118691243-118691579:+|nuORF	ENST00000504771.2_1_5:118691243-118691579:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	502.7665100097656	2	502.763635	1003.51272	2.9272	0.0014717	3.9906	0.0020063	6.9178	0.003478	502.76524030432176	37.016	0.40592	37.016	36.846	37.252	0					18	8	3	0	0	0	0.2678	1	14437	14437		94.006	3.6366	1	726860			50713	10176	33502	33644	51364	51364					0.01110088760083272
YTFQQPRHQ	9	Unmodified	_YTFQQPRHQ_					0	0	0		ENSG00000169193|ENST00000307471|CCDC126	ENSG00000169193|ENST00000307471|CCDC126	ENSG00000169193|ENST00000307471|CCDC126	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	602.7963256835938	2	602.796529	1203.5785	-1.8938	-0.0011416	0.92127	0.00055534	-0.9725	-0.00058622	602.7971145657646	34.587	0.3625	34.587	34.455	34.818	0					28	11	4	0	0	0	0.22377	1	12232	12232		58.782	2.3482	1	636490			50714	6153	33503	33645	51365	51365					-0.0151412206500936
YTGQSGHE	8	Unmodified	_YTGQSGHE_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	439.6846008300781	2	439.685581	877.35661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.334	1	37.334	36.834	37.834	0								0	0	0	1.7419	1	12230	12230		7.6903	0	1		+		50715	13268	33504	33646	51366	51366					-0.08697401481185807
YTGRGPSS	8	Unmodified	_YTGRGPSS_					0	0	0		ENST00000555063.5_1_14:100820782-100842614:-|nuORF;ENST00000553808.5_1_14:100820782-100835522:-|nuORF;ENST00000554084.5_1_14:100819360-100828234:-|nuORF;nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1	ENST00000555063.5_1_14:100820782-100842614:-|nuORF	ENST00000555063.5_1_14:100820782-100842614:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	412.6983642578125	2	412.698492	823.382431	0.92685	0.00038251	-1.2642	-0.00052172	-0.33731	-0.00013921	412.69803569996816	14.602	0.51812	14.602	14.341	14.86	0					16	10	3	0	0	0	0.54629	1	3684	3684		55.504	4.1688	1	405690			50716	4368	33505	33647	51367	51367					-0.03632507238899052
YTGVRIIH	8	Unmodified	_YTGVRIIH_					0	0	0		SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	479.7791748046875	2	479.777077	957.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.357	1	47.357	46.857	47.857	0								0	0	0	1.7419	1	18098	18098		28.254	1.4582	1				50717	6664	33506	33648	51368	51368					0.05913197371273782
YTHTSQVE	8	Unmodified	_YTHTSQVE_					0	0	0		VCAN|p.P2285T|1|0.25|ENSG00000038427|chr5:83539856-83539856|C/A|missense_variant	VCAN|p.P2285T|1|0.25|ENSG00000038427|chr5:83539856-83539856|C/A|missense_variant	VCAN|p.P2285T|1|0.25|ENSG00000038427|chr5:83539856-83539856|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	482.72186279296875	2	482.722164	963.429775	0.68617	0.00033123	-0.51033	-0.00024635	0.17584	8.4881E-05	482.7219376223285	39.459	0.15029	39.459	39.397	39.547	0					7	5	2	0	0	0	0.66372	1	15530	15530		38.806	0	1	89298			50718	23102	33507	33649	51369	51369					-0.053402727585535104
YTIEYTKN	8	Unmodified	_YTIEYTKN_					0	0	0			REV__tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	REV__tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	516.2582397460938	2	516.25584	1030.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.886	1	22.886	22.386	23.386	0								0	0	0	1.7419	1	6800	6800		20.482	2.1574	1		+		50719	21970	33508	33650	51370	51370					-0.016902425476018834
YTIGKEIID	9	Unmodified	_YTIGKEIID_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.2866821289062	2	526.28714	1050.55973	0.4629	0.00024362	-3.3884	-0.0017833	-2.9255	-0.0015396	526.2853418656988	35.668	0.18502	35.668	35.576	35.761	0					12	7	2	0	0	0	0.33044	1	12060	12060		47.657	1.6851	1	100890			50720	3319;10430	33509	33651	51371	51371					0.03646903520575506
YTIGKEIID	9	Unmodified	_YTIGKEIID_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA4A|p.V182Gfs*32|1|0.04|ENSG00000127824|chr2:219251156-219251157|-/TACACCA|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	526.2865600585938	2	526.28714	1050.55973	-1.2244	-0.0006444	-0.099488	-5.2359E-05	-1.3239	-0.00069676	526.2861010290833	35.657	0.098034	35.657	35.589	35.688	0					6	4	2	0	0	0	0.25716	1	12715	12715		54.776	0	1	45361			50721	3319;10430	33509	33651	51372	51372					0.03646903520575506
YTITPNGRF	9	Unmodified	_YTITPNGRF_					0	0	0		UBE2J2|p.M80T|1|0.34|ENSG00000160087|chr1:1257244-1257244|A/G|missense_variant	UBE2J2|p.M80T|1|0.34|ENSG00000160087|chr1:1257244-1257244|A/G|missense_variant	UBE2J2|p.M80T|1|0.34|ENSG00000160087|chr1:1257244-1257244|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.77734375	2	534.777274	1067.53999	-0.59168	-0.00031642	2.7751	0.001484	2.1834	0.0011676	534.7783554780904	36.32	0.10617	36.32	36.26	36.366	0					8	5	2	0	0	0	0.4966	1	12304	12304		32.812	2.3088	1	79398			50722	23085	33510	33652	51373	51373					0.008925723004722386
YTKLDLSR	8	Unmodified	_YTKLDLSR_					0	0	0			REV__RLF|p.F1759L|1|0.05|ENSG00000117000|chr1:40239977-40239977|T/C|missense_variant	REV__RLF|p.F1759L|1|0.05|ENSG00000117000|chr1:40239977-40239977|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	498.2794494628906	2	498.279649	994.544745	-1.284	-0.0006398	0.65518	0.00032647	-0.62883	-0.00031333	498.28000967087513	12.831	0.055798	12.831	12.778	12.834	0					6	3	2	0	0	0	0.67394	1	2565	2565		37.159	1.5408	1	139730	+		50723	21469	33511	33653	51374	51374					0.04725456443247822
YTKNYHIL	8	Unmodified	_YTKNYHIL_					0	0	0			REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	526.27880859375	2	526.282192	1050.54983	0.44411	0.00023373	2.7977	0.0014724	3.2418	0.0017061	526.2836341142329	36.985	0.5236	36.985	36.784	37.308	0					48	28	4	0	0	0	0.7126	1	12467	12467		31.955	5.2619	1	532370	+		50724	15231	33512	33654	51375	51375					0.026577603058512977
YTKRMNGM	8	2 Oxidation (M)	_YTKRM(Oxidation (M))NGM(Oxidation (M))_		YTKRM(1)NGM(1)		YTKRM(74)NGM(74)	0	0	2			REV__ENSG00000116285|ENST00000377482|ERRFI1	REV__ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	516.7354125976562	2	516.733694	1031.45284	3.3004	0.0017054	-0.025205	-1.3024E-05	3.2752	0.0016924	516.7336419783395	41.223	0.58688	41.223	41.047	41.634	0					40	14	4	0	0	0	0.37378	1	16368	16368		73.975	13.003	1	2018000	+		50725	14141	33513	33655	51376	51376		536;537			-0.061632932370912386
YTLDQTYAK	9	Unmodified	_YTLDQTYAK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;ENST00000441633.2_1_X:125606231-125606297:+|nuORF	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	551.7747802734375	2	551.774396	1101.53424	0.59049	0.00032582	0.16202	8.9398E-05	0.75251	0.00041521	551.7745716253139	29.358	0.21106	29.358	29.234	29.445	0					12	5	3	0	0	0	0.032383	1	10464	10464		106.68	10.493	1	281110			50726	7612	33514	33656	51377	51377					-0.012465710018659593
YTLDQTYAK	9	Unmodified	_YTLDQTYAK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;ENST00000441633.2_1_X:125606231-125606297:+|nuORF	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	551.7753295898438	2	551.774396	1101.53424	0.26228	0.00014472	0.48761	0.00026905	0.74989	0.00041377	551.7746816988881	29.111	0.22335	29.111	29.038	29.261	0					24	9	4	0	0	0	0.18416	1	9433	9433		63.534	25.722	1	598810			50727	7612	33514	33656	51378	51378					-0.012465710018659593
YTLDQTYAK	9	Unmodified	_YTLDQTYAK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;ENST00000441633.2_1_X:125606231-125606297:+|nuORF	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	551.7750854492188	2	551.774396	1101.53424	1.1478	0.00063334	0.0032281	1.7812E-06	1.1511	0.00063512	551.7742765688585	29.148	0.25642	29.148	29.054	29.31	0					14	7	3	0	0	0	0.24334	1	9757	9757		56.434	18.622	1	434660			50728	7612	33514	33656	51379	51379					-0.012465710018659593
YTLGYALGI	9	Unmodified	_YTLGYALGI_					0	0	0			REV__nc|ENSG00000005486|Q6NTF9-3|RHBDD2	REV__nc|ENSG00000005486|Q6NTF9-3|RHBDD2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	485.7658996582031	2	485.765843	969.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.302	1	44.302	43.802	44.802	0								0	0	0	0.31623	1	17260	17260		31.955	2.1133	1		+		50729	12841	33515	33657	51380	51380					0.031155531829767824
YTLKVAAPI	9	Unmodified	_YTLKVAAPI_					0	0	0			REV__UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant	REV__UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	488.2976379394531	2	488.29731	974.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.618	1	39.618	39.118	40.118	0								0	0	0	0.25587	1	15090	15090		53.351	12.779	1		+		50730	13729	33516	33658	51381	51381					0.0917611897103825
YTLRDGVGGL	10	Unmodified	_YTLRDGVGGL_					0	0	0		ENST00000502852.1_1_3:131101978-131102182:+|nuORF;nc|ENSG00000198585|Q96DE0-3|NUDT16;ENSG00000198585|ENST00000521288|NUDT16	ENST00000502852.1_1_3:131101978-131102182:+|nuORF	ENST00000502852.1_1_3:131101978-131102182:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.2866821289062	2	525.782556	1049.55056	1.7685	0.00092986	-0.42936	-0.00022575	1.3392	0.00070411	526.2845061924339	35.865	0.39118	35.865	35.637	36.028	0					28	11	5	0	0	0	0.37692	1	13918	13918		58.782	0	1	746820			50731	7577	33517	33659	51382	51382					0.027765549549030766
YTLRLCKM	8	Carbamidomethyl (C),Oxidation (M)	_YTLRLC(Carbamidomethyl (C))KM(Oxidation (M))_	YTLRLC(1)KM	YTLRLCKM(1)	YTLRLC(85)KM	YTLRLCKM(85)	0	1	1		nc|ENSG00000088926|P03951-2|F11;ENSG00000088926|ENST00000403665|F11	nc|ENSG00000088926|P03951-2|F11	nc|ENSG00000088926|P03951-2|F11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	550.7852783203125	2	550.783187	1099.55182	3.7265	0.0020525	-0.097277	-5.3579E-05	3.6292	0.0019989	550.7830977491856	36.553	0.75819	36.553	36.445	37.203	0					38	15	5	0	0	0	0.29152	1	14204	14204		85.359	16.573	1	5807600			50732	1789	33518	33660	51383	51383	74	81			0.006027297277796606
YTLRNKEVK	9	Unmodified	_YTLRNKEVK_					0	0	0		ENSG00000254737|ENST00000641722|OR10G4;ENSG00000280236|ENST00000642051|OR12D2;ENSG00000236981|ENST00000375024|OR10G9;ENSG00000234560|ENST00000641224|OR10G8;ENSG00000274102|ENST00000614722|OR4M2;ENSG00000182974|ENST00000332663|OR4M2B;ENSG00000176299|ENST00000641200|OR4M1;ENSG00000124657|ENST00000244623|OR2B6;nc|ENSG00000196383|P0C623|OR4Q2;nc|ENSG00000251608|P0DN82|OR12D1;ENSG00000196248|ENST00000641123|OR10S1;ENSG00000169488|ENST00000305051|OR4K15;ENSG00000256574|ENST00000553795|OR13A1;nc|ENSG00000196248|Q8NGN2|OR10S1;ENSG00000196184|ENST00000423932|OR10J1;nc|ENSG00000196184|P30954|OR10J1;ENSG00000168131|ENST00000303324|OR2B2;ENSG00000182634|ENST00000641585|OR10G7;ENSG00000197309|ENST00000641351|OR10D3	ENSG00000254737|ENST00000641722|OR10G4;ENSG00000196184|ENST00000423932|OR10J1;ENSG00000168131|ENST00000303324|OR2B2;ENSG00000182634|ENST00000641585|OR10G7;ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	384.22393798828125	3	384.224146	1149.65061	0.19329	7.4267E-05	-0.73036	-0.00028062	-0.53707	-0.00020635	384.2239155927391	17.276	0.11777	17.276	17.217	17.334	0					4	2	2	0	0	0	0.46194	1	5114	5114		36.447	0	1	239020			50733	8012;7336;6065;6910;7447	33519	33661	51384	51384					0.08176792288713841
YTLRQNGNH	9	Unmodified	_YTLRQNGNH_					0	0	0			REV__ENSG00000120729|ENST00000239926|MYOT	REV__ENSG00000120729|ENST00000239926|MYOT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	551.7743530273438	2	551.773054	1101.53155	3.6922	0.0020372	-0.40033	-0.00022089	3.2918	0.0018164	551.7727236692355	29.282	0.31165	29.282	29.174	29.485	0					16	6	4	0	0	0	0.12834	1	10699	10699		66.429	2.8954	1	2714000	+		50734	14295	33520	33662	51385	51385					-0.015149816161510898
YTMIYRNL	8	Unmodified	_YTMIYRNL_					0	0	0		nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	nc|ENSG00000135679|Q00987-9|MDM2;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	nc|ENSG00000135679|Q00987-9|MDM2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	537.2762451171875	2	537.276052	1072.53755	0.29375	0.00015782	-0.5496	-0.00029529	-0.25586	-0.00013747	537.2758024268385	46.315	0.040535	46.315	46.293	46.333	0					4	2	2	0	0	0	0.78978	1	17820	17820		19.36	0	1	37835			50735	11538;11353	33521	33663	51386	51386					0.004184005711522332
YTMKLHKF	8	Unmodified	_YTMKLHKF_					0	0	0			REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2909545898438	2	534.288963	1066.56337	1.8391	0.00098262	1.9546	0.0010443	3.7937	0.002027	534.2904725519741	39.812	0.77193	39.812	39.332	40.104	0					49	16	4	0	0	0	0.54629	1	15673	15673		55.504	55.504	1	477240	+		50736	12110	33522	33664	51387	51387					0.03275294813442997
YTMKLHKF	8	Unmodified	_YTMKLHKF_					0	0	0			REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.29150390625	2	534.288963	1066.56337	3.3809	0.0018064	1.4726	0.00078678	4.8534	0.0025931	534.289888025869	39.806	0.81687	39.806	39.317	40.134	0					47	18	3	0	0	0	0.57802	1	15631	15631		52.299	6.3472	1	589060	+		50737	12110	33522	33664	51388	51388					0.03275294813442997
YTNGKCVIL	9	Unmodified	_YTNGKCVIL_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	505.76983642578125	2	505.770603	1009.52665	0.7444	0.0003765	-1.1343	-0.00057369	-0.38989	-0.00019719	505.7700332274856	33.833	0.34	33.833	33.738	34.078	0					18	14	2	0	0	0	0.41113	1	11021	11021		40.778	3.6191	1	95413			50738	1469	33523	33665	51389	51389					0.022269981968634056
YTNGKCVIL	9	Unmodified	_YTNGKCVIL_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	505.7706604003906	2	505.770603	1009.52665	0.13063	6.6068E-05	-0.55624	-0.00028133	-0.42561	-0.00021526	505.77038546595804	34.113	0.74879	34.113	33.964	34.713	0					25	18	3	0	0	0	0.099922	1	13110	13110		79.451	13.648	1	222100			50739	1469	33523	33665	51390	51390					0.022269981968634056
YTNGKCVIL	9	Unmodified	_YTNGKCVIL_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	505.7705383300781	2	505.770603	1009.52665	-0.27663	-0.00013991	-0.1736	-8.7801E-05	-0.45023	-0.00022771	505.7707103125382	34.061	0.7927	34.061	33.908	34.7	0					32	16	3	0	0	0	0.22377	1	13003	13003		58.782	3.2778	1	481300			50740	1469	33523	33665	51391	51391					0.022269981968634056
YTNGKCVIL	9	Carbamidomethyl (C)	_YTNGKC(Carbamidomethyl (C))VIL_	YTNGKC(1)VIL		YTNGKC(64)VIL		0	1	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	534.2820434570312	2	534.281334	1066.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.931	1	30.931	30.431	31.431	0								0	0	0	0.13137	1	9901	9901		64.207	19.676	1				50741	1469	33523	33666	51392	51392	56				0.017503832255670204
YTNGKCVIL	9	Carbamidomethyl (C)	_YTNGKC(Carbamidomethyl (C))VIL_	YTNGKC(1)VIL		YTNGKC(67)VIL		0	1	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	534.2818603515625	2	534.281334	1066.54812	-0.54964	-0.00029366	-0.10222	-5.4616E-05	-0.65187	-0.00034828	534.2820559977645	30.975	0.39161	30.975	30.775	31.167	0					48	14	5	0	0	0	0.15163	1	10216	10216		67.494	31.875	1	980260			50742	1469	33523	33666	51393	51393	56				0.017503832255670204
YTNGKCVIL	9	Carbamidomethyl (C)	_YTNGKC(Carbamidomethyl (C))VIL_	YTNGKC(1)VIL		YTNGKC(83)VIL		0	1	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	534.28173828125	2	534.281334	1066.54812	1.7764	0.0009491	-1.8266	-0.00097594	-0.050235	-2.684E-05	534.2808262556915	31.214	0.58984	31.214	30.982	31.572	0					43	13	5	0	0	0	0.085655	1	11742	11742		82.75	19.444	1	5494800			50743	1469	33523	33666	51394	51394	56				0.017503832255670204
YTNGKCVIL	9	Carbamidomethyl (C)	_YTNGKC(Carbamidomethyl (C))VIL_	YTNGKC(1)VIL		YTNGKC(72)VIL		0	1	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2816772460938	2	534.281334	1066.54812	-1.3379	-0.00071479	0.085063	4.5448E-05	-1.2528	-0.00066934	534.2823793035818	30.962	0.51322	30.962	30.753	31.266	0					37	14	5	0	0	0	0.13267	1	10602	10602		71.877	22.436	1	987970			50744	1469	33523	33666	51395	51395	56				0.017503832255670204
YTNGKCVIL	9	Carbamidomethyl (C)	_YTNGKC(Carbamidomethyl (C))VIL_	YTNGKC(1)VIL		YTNGKC(73)VIL		0	1	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2813720703125	2	534.281334	1066.54812	1.8274	0.00097635	-1.0061	-0.00053757	0.82125	0.00043878	534.280775810974	31.161	0.60834	31.161	30.962	31.571	0					23	12	2	0	0	0	0.12834	1	11609	11609		72.879	9.573	1	5480900			50745	1469	33523	33666	51396	51396	56				0.017503832255670204
YTNGPLPDK	9	Unmodified	_YTNGPLPDK_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	502.7550048828125	2	502.756007	1003.49746	-0.049235	-2.4753E-05	-0.32866	-0.00016523	-0.37789	-0.00018999	502.7556474188706	23.748	0.46373	23.748	23.561	24.025	0					29	16	3	0	0	0	0.082776	1	6897	6897		83.647	30.296	1	175340			50746	4512	33524	33667	51397	51397					-0.004148228277699673
YTNGPLPDK	9	Unmodified	_YTNGPLPDK_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	502.7558288574219	2	502.756007	1003.49746	-0.068989	-3.4685E-05	0.39242	0.00019729	0.32343	0.00016261	502.756256651031	24.074	0.63685	24.074	23.768	24.405	0					28	14	2	0	0	0	0.011893	1	8051	8051		136.99	72.782	1	980930			50747	4512	33524	33667	51398	51398					-0.004148228277699673
YTNGPLPDK	9	Unmodified	_YTNGPLPDK_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	502.7561950683594	2	502.756007	1003.49746	-0.90022	-0.00045259	0.12448	6.2584E-05	-0.77573	-0.00039001	502.75612775363027	23.815	0.27004	23.815	23.642	23.912	0					21	9	3	0	0	0	0.36135	1	7193	7193		45.022	14.519	1	173260			50748	4512	33524	33667	51399	51399					-0.004148228277699673
YTNGPLPDK	9	Unmodified	_YTNGPLPDK_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	502.75567626953125	2	502.756007	1003.49746	-2.0641	-0.0010377	1.251	0.00062893	-0.81309	-0.00040879	502.75660916086173	23.818	0.41607	23.818	23.542	23.958	0					16	10	2	0	0	0	0.082776	1	7328	7328		83.647	34.205	1	142100			50749	4512	33524	33667	51400	51400					-0.004148228277699673
YTNRDADLF	9	Unmodified	_YTNRDADLF_					0	0	0		nc|ENSG00000112175|P22003-2|BMP5;ENSG00000112175|ENST00000370830|BMP5	nc|ENSG00000112175|P22003-2|BMP5	nc|ENSG00000112175|P22003-2|BMP5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	557.7615356445312	2	557.76182	1113.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.089	1	26.089	25.589	26.589	0								0	0	0	0.1633	1	9297	9297		56.721	21.103	1				50750	2719	33525	33668	51401	51401					-0.043126258044367205
YTNWAIGLSV	10	Unmodified	_YTNWAIGLSV_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000542765.4_1_12:21788478-21790169:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	562.2947387695312	2	562.292756	1122.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.577	1	37.577	37.077	38.077	0								0	0	0	0.3805	1	14255	14255		36.447	4.4919	1				50751	2690	33526	33669	51402	51402					0.014577256146822037
YTNYNNSEL	9	Unmodified	_YTNYNNSEL_					0	0	0			REV__ENSG00000138685|ENST00000644866|FGF2	REV__ENSG00000138685|ENST00000644866|FGF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	559.2442016601562	2	559.24346	1116.47237	1.7725	0.00099125	0.3457	0.00019333	2.1182	0.0011846	559.2440261745835	38.653	0.23369	38.653	38.567	38.801	0					18	8	3	0	0	0	0.25716	1	15168	15168		54.776	0	1	198400	+		50752	14994	33527	33670	51403	51403					-0.08120922420994248
YTPQTKQLI	9	Unmodified	_YTPQTKQLI_					0	0	0			REV__nc|ENSG00000186416|O15226|NKRF	REV__nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	364.54119873046875	3	364.541363	1090.60226	0.47624	0.00017361	-2.1643	-0.00078899	-1.6881	-0.00061538	364.87459725893865	25.097	0.93392	25.097	24.562	25.496	0					76	22	4	0	0	0	0.47038	1	8376	8376		35.152	15.155	1	1353100	+		50753	17077	33528	33671	51404	51404					0.06058298648804339
YTPVAAGLL	9	Unmodified	_YTPVAAGLL_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	452.75811767578125	2	452.760561	903.506569	-1.1944	-0.00054079	-3.2274	-0.0014612	-4.4218	-0.002002	452.7589461634559	20.329	0.11216	20.329	20.26	20.372	0					5	3	2	0	0	0	0.27781	1	5665	5665		52.299	2.2746	1	87268			50754	1020	33529	33672	51405	51405					0.0509557052856735
YTQEILPFK	9	Unmodified	_YTQEILPFK_					0	0	0			REV__nc|ENSG00000157152|Q92777-2|SYN2	REV__nc|ENSG00000157152|Q92777-2|SYN2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	379.876220703125	3	380.209613	1137.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.556	1	25.556	25.056	26.056	0								0	0	0	0.3245	1	7964	7964		30.318	2.2362	1		+		50755	21077	33530	33673	51406	51406					0.04371182791578576
YTQELELKYL	10	Unmodified	_YTQELELKYL_					0	0	0			REV__LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	REV__LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	650.3448486328125	2	650.345186	1298.67582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.207	1	16.207	15.707	16.707	0								0	0	0	0.4201	1	3793	3793		14.865	2.0532	1		+		50756	16662	33531	33674	51407	51407					0.038428023006190415
YTQFIMCVA	9	Unmodified	_YTQFIMCVA_					0	0	0			REV__nc|ENSG00000066135|O75164-2|KDM4A	REV__nc|ENSG00000066135|O75164-2|KDM4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	539.743896484375	2	538.251188	1074.48782	0.29834	0.00016058	-0.55518	-0.00029883	-0.25684	-0.00013825	538.2508460984459	34.085	0.40063	34.085	33.935	34.336	0					21	9	4	0	0	0	0.51817	1	13069	13069		30.504	1.3541	1	937960	+		50757	13124	33532	33675	51408	51408					-0.04644050429146773
YTQGALSHQM	10	Oxidation (M)	_YTQGALSHQM(Oxidation (M))_		YTQGALSHQM(1)		YTQGALSHQM(62)	0	0	1			REV__ENST00000400706.3_1_12:78799-87272:+|nuORF	REV__ENST00000400706.3_1_12:78799-87272:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	576.2601928710938	2	576.26113	1150.50771	-1.5757	-0.00090803	-0.9504	-0.00054768	-2.5261	-0.0014557	576.2606676021695	28.1	0.38193	28.1	27.981	28.363	0					19	9	3	0	0	0	0.34667	1	9270	9270		62.107	14.192	1	925900	+		50758	16845	33533	33676	51409	51409		644			-0.06152583164839598
YTQLLPLPF	9	Unmodified	_YTQLLPLPF_					0	0	0		ENST00000478284.5_1_1:26146491-26150180:+|nuORF	ENST00000478284.5_1_1:26146491-26150180:+|nuORF	ENST00000478284.5_1_1:26146491-26150180:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	364.5413513183594	3	364.542704	1090.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.682	1	24.682	24.182	25.182	0								0	0	0	0.36609	1	7586	7586		20.947	0	1				50759	9931	33534	33677	51410	51410					0.06460388142522788
YTQMKNIL	8	Unmodified	_YTQMKNIL_					0	0	0		tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	505.7701416015625	2	505.770603	1009.52665	0.82204	0.00041577	-1.274	-0.00064435	-0.45196	-0.00022859	505.77026797816495	34.107	0.66492	34.107	34.037	34.702	0					39	17	4	0	0	0	0.34985	1	12670	12670		76.847	16.553	1	547410			50760	22596	33535	33678	51411	51411					0.02226998196886143
YTRSVLMVAIL	11	Unmodified	_YTRSVLMVAIL_					0	0	0			REV__ENSG00000117528|ENST00000370214|ABCD3	REV__ENSG00000117528|ENST00000370214|ABCD3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	633.8710327148438	2	633.367941	1264.72133	3.0802	0.0019509	-0.64247	-0.00040692	2.4378	0.001544	633.8692087174154	54.545	0.51724	54.545	54.393	54.91	0					50	31	2	0	0	0	0.78498	1	20810	20810		18.262	0.89712	1	148960	+		50761	14200	33536	33679	51412	51412					0.09955749282039505
YTSGSGQKLF	10	Unmodified	_YTSGSGQKLF_					0	0	0		nc|ENSG00000131355|Q9BY15-3|ADGRE3;ENST00000599900.5_1_19:14769312-14779653:-|nuORF;ADGRE3|p.F254Lfs*12|1|0.18|ENSG00000131355|chr19:14647301-14647301|A/-|frameshift_variant;ENSG00000131355|ENST00000253673|ADGRE3;nc|ENSG00000131355|Q9BY15-2|ADGRE3	nc|ENSG00000131355|Q9BY15-3|ADGRE3	nc|ENSG00000131355|Q9BY15-3|ADGRE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	544.2758178710938	2	544.274564	1086.53457	1.1705	0.00063708	-0.094588	-5.1482E-05	1.0759	0.00058559	544.2744696328774	32.647	0.48035	32.647	32.508	32.989	0					50	19	3	0	0	0	0.50881	1	10675	10675		44.377	3.599	1	535910			50762	75	33537	33680	51413	51413					-0.005231512820046191
YTSRKAKVP	9	Unmodified	_YTSRKAKVP_					0	0	0			REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.3088989257812	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.871	1	44.871	44.371	45.371	0								0	0	0	0.30504	1	17418	17418		34.173	3.6689	1		+		50763	15379	33538	33681	51414	51414					0.08057138088520333
YTSRKREVT	9	Unmodified	_YTSRKREVT_					0	0	0			REV__ENST00000482786.5_1_2:46815246-46815330:-|nuORF	REV__ENST00000482786.5_1_2:46815246-46815330:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	380.54107666015625	3	380.543767	1138.60947	-2.1461	-0.00081668	-4.2033	-0.0015995	-6.3494	-0.0024162	380.5420983255375	32.026	0.096764	32.026	31.979	32.076	0					4	2	2	0	0	0	0.61124	1	11104	11104		18.262	2.2553	1	82482	+		50764	19615	33539	33682	51415	51415					0.045710312492246885
YTSRMNLYK	9	Unmodified	_YTSRMNLYK_					0	0	0			REV__ENSG00000265808|ENST00000578049|SEC22B	REV__ENSG00000265808|ENST00000578049|SEC22B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	588.2958374023438	2	588.297516	1174.58048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.757	1	43.757	43.257	44.257	0								0	0	0	0.29774	1	13777	13777		35.618	0.46626	1		+		50765	17787	33540	33683	51416	51416					0.00017170628598250914
YTTLERGY	8	Unmodified	_YTTLERGY_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;ASTN2|p.L572M|1|0.37|ENSG00000148219|chr9:116976151-116976151|G/T|missense_variant	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	501.748046875	2	501.748182	1001.48181	0.95691	0.00048013	-1.0919	-0.00054788	-0.13503	-6.7751E-05	501.7475375654922	32.089	0.25172	32.089	31.99	32.242	0					12	5	3	0	0	0	0.54629	1	12171	12171		55.504	4.1688	1	693690			50766	4814	33541	33684	51417	51417					-0.018871093448069587
YTTSLCLCIV	10	Unmodified	_YTTSLCLCIV_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant;ENST00000462984.1_1_X:70346235-70347318:+|nuORF	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	558.2786865234375	2	558.277403	1114.54025	1.2922	0.00072141	1.2267	0.00068486	2.5189	0.0014063	558.2782714091892	34.948	0.15056	34.948	34.872	35.023	0					9	6	2	0	0	0	0.57532	1	11445	11445		37.159	1.5408	1	73852			50767	7027	33542	33685	51418	51418					-0.012435120862392068
YTTVLSVT	8	Unmodified	_YTTVLSVT_					0	0	0			REV__ENST00000594883.1_1_19:57687110-57687311:+|nuORF	REV__ENST00000594883.1_1_19:57687110-57687311:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	442.2420959472656	2	442.242201	882.469849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.005	1	33.005	32.505	33.505	0								0	0	0	1.7419	1	11054	11054		33.516	0	1		+		50768	20556	33543	33686	51419	51419					0.023912739120078186
YTVGKKPKS	9	Unmodified	_YTVGKKPKS_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	336.5342102050781	3	336.53432	1006.58113	0.24153	8.1282E-05	-0.55341	-0.00018624	-0.31188	-0.00010496	336.53413821165856	32.008	0.56699	32.008	31.646	32.213	0					35	24	2	0	0	0	0.61124	1	10225	10225		20.837	0	1	120210	+		50769	17515	33544	33687	51420	51420					0.07810333339944009
YTVLAPCHL	9	Carbamidomethyl (C)	_YTVLAPC(Carbamidomethyl (C))HL_	YTVLAPC(1)HL		YTVLAPC(42)HL		0	1	0			REV__ENST00000584908.5_1_17:37856482-37868536:+|nuORF	REV__ENST00000584908.5_1_17:37856482-37868536:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.2764282226562	2	537.276052	1072.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.37	1	46.37	45.87	46.87	0								0	0	0	0.25856	1	17139	17139		42.474	7.2737	1		+		50770	15131	33545	33688	51421	51421	561				0.004184005711522332
YTVLFSAGL	9	Unmodified	_YTVLFSAGL_					0	0	0		USH2A|p.A99V|1|0.28|ENSG00000042781|chr1:216422041-216422041|G/A|missense_variant	USH2A|p.A99V|1|0.28|ENSG00000042781|chr1:216422041-216422041|G/A|missense_variant	USH2A|p.A99V|1|0.28|ENSG00000042781|chr1:216422041-216422041|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	485.76568603515625	2	485.765843	969.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.16	1	44.16	43.66	44.66	0								0	0	0	0.3304	1	17694	17694		29.15	1.2673	1				50771	23092	33546	33689	51422	51422					0.031155531829995198
YTVLSPTGAR	10	Unmodified	_YTVLSPTGAR_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	532.7915649414062	2	532.790381	1063.56621	1.7165	0.00091453	-0.99133	-0.00052817	0.72516	0.00038636	532.7896654337964	41.713	0.18195	41.713	41.607	41.789	0					12	7	2	0	0	0	0.60076	1	16397	16397		34.173	2.6427	1	114840	+		50772	21069	33547	33690	51423	51423					0.036968414719467546
YTVSKLQVL	9	Unmodified	_YTVSKLQVL_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.8135986328125	2	525.813325	1049.6121	1.1895	0.00062547	-0.41809	-0.00021984	0.77144	0.00040563	525.8130458648883	34.259	0.2597	34.259	34.161	34.42	0					22	8	4	0	0	0	0.28897	1	12103	12103		53.351	3.9099	1	593530			50773	6762	33548	33691	51424	51424					0.08927486654192762
YTVSNTRPL	9	Unmodified	_YTVSNTRPL_					0	0	0		ENST00000502513.1_1_4:944259-945532:+|nuORF	ENST00000502513.1_1_4:944259-945532:+|nuORF	ENST00000502513.1_1_4:944259-945532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.782958984375	2	525.782556	1049.55056	1.1879	0.00062455	-0.90688	-0.00047682	0.28098	0.00014773	525.7820459950135	33.572	1.0883	33.572	33.414	34.503	0					98	32	6	0	0	0	0.26904	1	12172	12172		53.351	3.3269	1	36906000			50774	10157	33549	33692	51425	51425					0.027765549549030766
YTVSNTRPL	9	Unmodified	_YTVSNTRPL_					0	0	0		ENST00000502513.1_1_4:944259-945532:+|nuORF	ENST00000502513.1_1_4:944259-945532:+|nuORF	ENST00000502513.1_1_4:944259-945532:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.783203125	2	525.782556	1049.55056	3.4522	0.0018151	-3.1179	-0.0016394	0.3343	0.00017577	525.7814428471103	33.759	2.3526	33.759	33.415	35.768	0					120	48	6	0	0	0	0.16002	1	13249	13249		66.429	10.925	1	281290000			50775	10157	33549	33692	51426	51426					0.027765549549030766
YTYALEKHF	9	Unmodified	_YTYALEKHF_					0	0	0			REV__GPR141|p.F230Lfs*2|2|0.37|ENSG00000187037|chr7:37741078-37741078|T/-|frameshift_variant	REV__GPR141|p.F230Lfs*2|2|0.37|ENSG00000187037|chr7:37741078-37741078|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	586.2946166992188	2	586.292756	1170.57096	3.2028	0.0018778	-0.53477	-0.00031353	2.668	0.0015643	586.2924869675868	42.616	0.53333	42.616	42.362	42.896	0					40	15	5	0	0	0	0.1236	1	17004	17004		73.975	10.668	1	2212400	+		50776	17106	33550	33693	51427	51427					-0.007502743853137872
YTYGKPVR	8	Unmodified	_YTYGKPVR_					0	0	0		CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	492.2673034667969	2	492.269084	982.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.474	1	18.474	17.974	18.974	0								0	0	0	1.7419	1	5412	5412		12.959	0	1			+	50777	624	33551	33694	51428	51428					0.03165491134370768
YTYISMDGI	9	Unmodified	_YTYISMDGI_					0	0	0			REV__PCDH17|p.V519M|1|0.34|ENSG00000118946|chr13:57634101-57634101|G/A|missense_variant	REV__PCDH17|p.V519M|1|0.34|ENSG00000118946|chr13:57634101-57634101|G/A|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	531.7453002929688	2	531.74425	1061.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.302	1	14.302	13.802	14.802	0								0	0	0	0.39567	1	3076	3076		12.207	0	1		+		50778	21341	33552	33695	51429	51429					-0.05433004656583762
YVACALLVF	9	Unmodified	_YVACALLVF_					0	0	0		ENST00000552090.1_1_12:49167835-49170266:-|nuORF;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	ENST00000552090.1_1_12:49167835-49170266:-|nuORF	ENST00000552090.1_1_12:49167835-49170266:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	499.7746276855469	2	499.772614	997.530675	2.9192	0.0014589	-0.85967	-0.00042964	2.0595	0.0010293	499.7715504895481	44.455	0.23851	44.455	44.345	44.583	0					13	9	2	0	0	0	0.21025	1	17816	17816		60.404	13.637	1	91055			50779	6477	33553	33696	51430	51430					0.03181087690586537
YVAELEAEL	9	Unmodified	_YVAELEAEL_					0	0	0			REV__nc|ENSG00000065989|P27815-2|PDE4A;REV__nc|ENSG00000065989|P27815-7|PDE4A	REV__nc|ENSG00000065989|P27815-2|PDE4A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	346.17852783203125	3	346.17809	1035.51244	1.463	0.00050647	-0.28618	-9.9068E-05	1.1768	0.0004074	346.1779470095143	21.216	0.56209	21.216	20.964	21.526	0					28	11	4	0	0	0	0.47428	1	6992	6992		42.396	42.396	1	1414900	+		50780	20932;20933	33554	33697	51431	51431					-0.003893757504556561
YVAIMIDLI	9	Unmodified	_YVAIMIDLI_					0	0	0			REV__ENST00000432641.2_1_7:96810621-96810783:+|nuORF	REV__ENST00000432641.2_1_7:96810621-96810783:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	525.8007202148438	2	525.798829	1049.5831	3.4514	0.0018148	-0.14211	-7.4719E-05	3.3093	0.00174	525.7987240498838	48.881	0.31496	48.881	48.762	49.077	0					32	17	3	0	0	0	0.61124	1	19371	19371		18.324	0.95945	1	369410	+		50781	19179	33555	33698	51432	51432					0.06029626033546265
YVALQNGKD	9	Unmodified	_YVALQNGKD_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1;MARK1|p.R513Q|1|0.42|ENSG00000116141|chr1:220650687-220650687|G/A|missense_variant	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	504.2632751464844	2	504.261456	1006.50836	2.9313	0.0014782	0.9765	0.00049241	3.9078	0.0019706	504.2618559634144	48.165	0.24768	48.165	48.049	48.297	0					31	12	3	0	0	0	0.25716	1	19143	19143		38.806	0	1	795310			50782	2964	33556	33699	51433	51433					0.005365795465081646
YVAMIPLLF	9	Unmodified	_YVAMIPLLF_					0	0	0			REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	533.8062133789062	2	533.803914	1065.59328	3.3878	0.0018084	1.0354	0.00055272	4.4232	0.0023611	533.8044467071493	44.924	0.22808	44.924	44.83	45.058	0					18	9	3	0	0	0	0.21025	1	17983	17983		60.404	60.404	1	212330	+		50783	21140	33557	33700	51434	51434					0.06310233758767936
YVCHLLYL	8	Carbamidomethyl (C)	_YVC(Carbamidomethyl (C))HLLYL_	YVC(1)HLLYL		YVC(55)HLLYL		0	1	0		nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	540.7816772460938	2	540.78097	1079.54739	3.5026	0.0018941	-3.0091	-0.0016273	0.49342	0.00026683	540.7795444021394	24.699	0.64811	24.699	24.496	25.144	0					32	13	4	0	0	0	0.55232	1	8540	8540		54.895	10.364	1	2448100			50784	2169	33558	33701	51435	51435	83				0.010795885765219282
YVCHVSNEF	9	Unmodified	_YVCHVSNEF_					0	0	0		nc|ENSG00000143217|Q96NY8-2|NECTIN4;ENSG00000143217|ENST00000368012|NECTIN4	nc|ENSG00000143217|Q96NY8-2|NECTIN4	nc|ENSG00000143217|Q96NY8-2|NECTIN4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	549.2401123046875	2	549.239667	1096.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.973	1	43.973	43.473	44.473	0								0	0	0	0.27025	1	16538	16538		40.778	1.972	1				50785	4533	33559	33702	51436	51436					-0.07959353222258869
YVDHVEKR	8	Unmodified	_YVDHVEKR_					0	0	0		ITCH-PIGU|2|fusion;nc|ENSG00000289720|Q96J02-3|ITCH;ITCH-PIGU|3|fusion;ITCH-PIGU|1|fusion;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	ITCH-PIGU|2|fusion	ITCH-PIGU|2|fusion	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.2733764648438	2	523.274898	1044.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.678	1	11.678	11.178	12.178	0								0	0	0	1.7419	1	2299	2299		16.473	6.2079	1				50786	1606	33560	33703	51437	51437					0.014756881576886371
YVDIRGSK	8	Unmodified	_YVDIRGSK_					0	0	0			REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	469.25830078125	2	469.258717	936.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.407	1	16.407	15.907	16.907	0								0	0	0	1.7419	1	4439	4439		30.504	1.3541	1		+		50787	15818	33561	33704	51438	51438					0.032089007547028814
YVDMGVQLPA	10	Unmodified	_YVDMGVQLPA_					0	0	0		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	546.7775268554688	2	546.773342	1091.53213	3.8086	0.0020824	1.9251	0.0010526	5.7336	0.003135	546.774630276149	29.085	0.56519	29.085	28.826	29.392	0					29	11	3	0	0	0	0.22198	1	10600	10600		76.774	1.7308	1	2149400			50788	6504	33562	33705	51439	51439					-0.009973230113018872
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	523.7979125976562	2	523.797675	1045.5808	0.090577	4.7444E-05	0.13912	7.2872E-05	0.2297	0.00012032	523.7976602414926	38.153	0.32676	38.153	38.064	38.391	0					29	13	3	0	0	0	0.078509	1	14469	14469		85.161	23.053	1	2215600			50789	4419	33563	33706	51440	51440					0.059829136200733046
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.7971801757812	2	523.797675	1045.5808	0.38302	0.00020062	0.019475	1.0201E-05	0.40249	0.00021083	523.7977071481164	37.907	0.18478	37.907	37.838	38.022	0					17	10	2	0	0	0	0.33044	1	12792	12792		47.657	9.8458	1	237550			50790	4419	33563	33706	51441	51441					0.059829136200733046
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	523.7974243164062	2	523.797675	1045.5808	0.03207	1.6798E-05	0.32027	0.00016775	0.35234	0.00018455	523.797743309655	38.101	0.30409	38.101	38.029	38.333	0					17	10	2	0	0	0	0.19605	1	14925	14925		62.107	22.855	1	1300500			50791	4419	33563	33706	51442	51442					0.059829136200733046
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	523.7977294921875	2	523.797675	1045.5808	-1.2754	-0.00066807	1.9226	0.0010071	0.64721	0.00033901	523.7985705913395	37.88	0.19891	37.88	37.794	37.993	0					22	9	3	0	0	0	0.24095	1	13543	13543		56.721	14.325	1	330390			50792	4419	33563	33706	51443	51443					0.059829136200733046
YVDWHFLL	8	Unmodified	_YVDWHFLL_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;AOC3|p.R585Sfs*60|1|0.28|ENSG00000131471|chr17:42854594-42854595|-/C|frameshift_variant;AOC3|p.T657Lfs*22|1|0.15|ENSG00000131471|chr17:42855521-42855521|C/-|frameshift_variant;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	546.78076171875	2	546.779285	1091.54402	1.8543	0.0010139	0.91684	0.00050131	2.7712	0.0015152	546.7799999460208	40.556	0.57819	40.556	40.441	41.02	0					32	19	3	0	0	0	0.54629	1	15973	15973		35.201	0	1	448770			50793	172	33564	33707	51444	51444					0.0019066179418132378
YVEDQLAPHQ	10	Unmodified	_YVEDQLAPHQ_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2899780273438	2	600.288202	1198.56185	3.1211	0.0018736	0.435	0.00026113	3.5562	0.0021347	600.288388814637	42.762	0.95949	42.762	42.398	43.357	0					59	29	3	0	0	0	0.54197	1	17111	17111		40.778	7.9657	1	179530	+		50794	16345	33565	33708	51445	51445					-0.029486677416116436
YVEKAVAVF	9	Unmodified	_YVEKAVAVF_					0	0	0		SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant;nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant	SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	513.2868041992188	2	513.286943	1024.55933	1.4462	0.00074233	-0.69161	-0.00035499	0.75462	0.00038734	513.286533925643	41.232	0.18484	41.232	41.186	41.371	0					7	4	2	0	0	0	0.20551	1	16398	16398		60.972	5.4677	1	165440			50795	4295	33566	33709	51446	51446					0.04803528591378381
YVEKFHLQ	8	Unmodified	_YVEKFHLQ_					0	0	0		ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	532.2835083007812	2	532.282192	1062.54983	1.7337	0.00092282	0.80712	0.00042961	2.5408	0.0013524	532.2826897134681	44.532	0.11156	44.532	44.483	44.594	0					5	4	2	0	0	0	0.66372	1	17850	17850		38.806	1.647	1	34055			50796	7909	33567	33710	51447	51447					0.021057603058579843
YVEKKSRF	8	Unmodified	_YVEKKSRF_					0	0	0			REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	REV__GPRASP1|p.I1166Ffs*16|1|0.29|ENSG00000198932|chrX:102657404-102657404|A/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7952880859375	2	528.795466	1055.57638	0.50878	0.00026904	-0.64444	-0.00034078	-0.13565	-7.1732E-05	528.7952220760591	26.589	0.1357	26.589	26.522	26.658	0					7	4	2	0	0	0	0.6088	1	8105	8105		37.159	5.2042	1	44586	+		50797	17451	33568	33711	51448	51448					0.0508144919717779
YVEKYPNK	8	Unmodified	_YVEKYPNK_					0	0	0			REV__nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	REV__nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	521.2753295898438	2	520.7742	1039.53385	0.70485	0.00036707	-0.068559	-3.5704E-05	0.63629	0.00033136	521.2753190424305	27.496	0.14109	27.496	27.423	27.565	0					7	4	2	0	0	0	0.72381	1	8485	8485		30.504	0	1	114710	+		50798	14257	33569	33712	51449	51449					0.01566054068939593
YVENDEKQL	9	Unmodified	_YVENDEKQL_					0	0	0			REV__VNN2|p.E378D|1|0.25|ENSG00000112303|chr6:132751211-132751211|C/A|missense_variant	REV__VNN2|p.E378D|1|0.25|ENSG00000112303|chr6:132751211-132751211|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.2755126953125	2	569.274761	1136.53497	1.1427	0.00065048	-0.36849	-0.00020977	0.77416	0.00044071	569.2747615857754	26.288	0.23494	26.288	26.213	26.448	0					15	7	3	0	0	0	0.18416	1	7975	7975		47.657	4.7931	1	488070	+		50799	22275	33570	33713	51450	51450					-0.02783776352816858
YVENDEKQL	9	Unmodified	_YVENDEKQL_					0	0	0			REV__VNN2|p.E378D|1|0.25|ENSG00000112303|chr6:132751211-132751211|C/A|missense_variant	REV__VNN2|p.E378D|1|0.25|ENSG00000112303|chr6:132751211-132751211|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.2755737304688	2	569.274761	1136.53497	1.9742	0.0011238	-0.51574	-0.0002936	1.4584	0.00083025	569.274647266371	26.517	0.26699	26.517	26.46	26.727	0					14	5	4	0	0	0	0.18416	1	9513	9513		47.657	0	1	1355800	+		50800	22275	33570	33713	51451	51451					-0.02783776352816858
YVFGRCSF	8	Unmodified	_YVFGRCSF_					0	0	0			REV__ENST00000383052.5_1_Y:2847091-2847145:+|nuORF	REV__ENST00000383052.5_1_Y:2847091-2847145:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.7314453125	2	489.728738	977.442923	2.6378	0.0012918	3.1997	0.001567	5.8374	0.0028588	489.7304783732782	43.162	0.18731	43.162	43.096	43.283	0					11	6	2	0	0	0	0.41952	1	17278	17278		68.485	5.1784	1	75708	+		50801	18800	33571	33714	51452	51452					-0.04670113180179669
YVFSGSRLK	9	Unmodified	_YVFSGSRLK_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	528.7957763671875	2	528.795466	1055.57638	0.11013	5.8236E-05	0.23814	0.00012593	0.34827	0.00018416	528.7956544110684	26.801	0.22428	26.801	26.702	26.927	0					11	5	3	0	0	0	0.076532	1	9299	9299		69.628	29.055	1	459950			50802	7433	33572	33715	51453	51453					0.0508144919717779
YVGAAKLK	8	Unmodified	_YVGAAKLK_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	425.26300048828125	2	425.263271	848.511988	-0.22013	-9.3612E-05	-0.10667	-4.5364E-05	-0.3268	-0.00013898	425.26313891876003	18.565	0.28941	18.565	18.465	18.755	0					22	10	3	0	0	0	0.25001	1	4636	4636		101.21	18.907	1	2362300			50803	2075	33573	33716	51454	51454					0.08167294111035517
YVGAAKLK	8	Unmodified	_YVGAAKLK_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.26300048828125	2	425.263271	848.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.866	1	18.866	18.366	19.366	0								0	0	0	1.7419	1	5593	5593		52.299	9.8247	1				50804	2075	33573	33716	51455	51455					0.08167294111035517
YVGAAKLK	8	Unmodified	_YVGAAKLK_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	425.2633361816406	2	425.263271	848.511988	-0.7554	-0.00032124	1.0067	0.00042813	0.25135	0.00010689	425.2636530027337	18.861	0.69116	18.861	18.789	19.481	0					31	17	2	0	0	0	0.28158	1	5598	5598		88.643	10.699	1	8312500			50805	2075	33573	33716	51456	51456					0.08167294111035517
YVGAAKLK	8	Unmodified	_YVGAAKLK_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.2629699707031	2	425.263271	848.511988	-1.0792	-0.00045896	0.75586	0.00032144	-0.32337	-0.00013752	425.263580473018	18.564	0.33842	18.564	18.497	18.835	0					17	11	2	0	0	0	0.25001	1	4866	4866		101.21	29.834	1	1840500			50806	2075	33573	33716	51457	51457					0.08167294111035517
YVGAAKLK	8	Unmodified	_YVGAAKLK_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	425.2630615234375	2	425.263271	848.511988	-0.97088	-0.00041288	0.70831	0.00030122	-0.26258	-0.00011166	425.26353126685586	18.554	0.14095	18.554	18.485	18.626	0					9	4	3	0	0	0	0.32408	1	4875	4875		79.939	14.136	1	660060			50807	2075	33573	33716	51458	51458					0.08167294111035517
YVGAAKLK	8	Unmodified	_YVGAAKLK_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2633972167969	2	425.263271	848.511988	0.89774	0.00038177	-1.1719	-0.00049835	-0.27413	-0.00011658	425.26272767159077	18.801	0.53674	18.801	18.694	19.231	0					22	11	3	0	0	0	0.28158	1	5824	5824		88.643	6.3378	1	4557600			50808	2075	33573	33716	51459	51459					0.08167294111035517
YVGAAKLK	8	Unmodified	_YVGAAKLK_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	425.2633056640625	2	425.263271	848.511988	0.37317	0.00015869	-0.73145	-0.00031106	-0.35828	-0.00015236	425.26288381033777	18.81	0.38888	18.81	18.677	19.066	0					11	8	2	0	0	0	0.29779	1	5848	5848		83.287	27.783	1	1547800			50809	2075	33573	33716	51460	51460					0.08167294111035517
YVGGESPLKE	10	Unmodified	_YVGGESPLKE_					0	0	0		ENST00000569053.5_1_18:66357168-66367709:-|nuORF;nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3	ENST00000569053.5_1_18:66357168-66367709:-|nuORF	ENST00000569053.5_1_18:66357168-66367709:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	539.7728271484375	2	539.774396	1077.53424	0.92615	0.00049991	-2.7039	-0.0014595	-1.7778	-0.0009596	539.7726927788613	21.183	0.11145	21.183	21.124	21.235	0					5	3	2	0	0	0	0.46989	1	5796	5796		36.447	0	1	33684			50810	5908	33574	33717	51461	51461					-0.001425710018565951
YVGHPVSV	8	Unmodified	_YVGHPVSV_					0	0	0		nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	429.22979736328125	2	429.229428	856.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.437	1	40.437	39.937	40.937	0								0	0	0	1.7419	1	13534	13534		35.201	5.3592	1				50811	5838	33575	33718	51462	51462					0.010338441802446141
YVGLGAGYFL	10	Unmodified	_YVGLGAGYFL_					0	0	0			REV__ENSG00000170923|ENST00000641081|OR7G2	REV__ENSG00000170923|ENST00000641081|OR7G2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	530.2797241210938	2	530.279118	1058.54368	1.6396	0.00086943	0.73399	0.00038922	2.3736	0.0012587	530.2794403258024	48.115	0.18493	48.115	48.035	48.22	0					15	9	2	0	0	0	0.50739	1	19140	19140		44.531	5.7249	1	106780	+		50812	16388	33576	33719	51463	51463					0.01675242074338712
YVHDAPVRSL	10	Unmodified	_YVHDAPVRSL_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B;ENST00000487639.1_1_2:113588742-113591137:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.8106079101562	2	578.809105	1155.60366	1.0643	0.00061601	1.5844	0.00091704	2.6486	0.0015331	578.809808629807	25.611	0.11768	25.611	25.552	25.67	0					4	2	2	0	0	0	0.45669	1	9127	9127		50.034	17.221	1	94936			50813	3421	33577	33720	51464	51464					0.03207932737564079
YVHDAPVRSL	10	Unmodified	_YVHDAPVRSL_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B;ENST00000487639.1_1_2:113588742-113591137:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.8095703125	2	578.809105	1155.60366	0.13889	8.0391E-05	0.56584	0.00032751	0.70473	0.0004079	578.809643054276	25.573	0.1687	25.573	25.464	25.633	0					6	3	2	0	0	0	0.3337	1	8987	8987		63.534	22.756	1	318290			50814	3421	33577	33720	51465	51465					0.03207932737564079
YVHDAPVRSL	10	Unmodified	_YVHDAPVRSL_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B;ENST00000487639.1_1_2:113588742-113591137:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	386.2085266113281	3	386.208495	1155.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.586	1	25.586	25.086	26.086	0								0	0	0	0.3598	1	8978	8978		53.597	0	1				50815	3421	33577	33720	51466	51466					0.03207932737564079
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	404.1881103515625	3	404.18776	1209.54145	1.7546	0.00070918	-1.4708	-0.00059447	0.28379	0.00011471	404.18718089813706	23.126	0.14349	23.126	23.067	23.21	0					6	4	2	0	0	0	0.34667	1	6653	6653		74.165	41.414	1	54525			50816	3669	33578	33721	51467	51467					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	605.7796020507812	2	605.778002	1209.54145	1.5718	0.00095218	-1.7907	-0.0010848	-0.2189	-0.0001326	605.776988044825	23.11	0.1736	23.11	23.058	23.232	0					10	5	3	0	0	0	0.536	1	6634	6634		41.427	19.467	1	100250			50817	3669	33578	33721	51468	51468					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.1877136230469	3	404.18776	1209.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.399	1	23.399	22.899	23.899	0								0	0	0	0.010668	1	7741	7741		128.6	82.145	1				50818	3669	33578	33721	51469	51469					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	605.7783203125	2	605.778002	1209.54145	0.33348	0.00020201	0.053391	3.2343E-05	0.38687	0.00023436	605.7780520310627	23.409	0.22953	23.409	23.309	23.538	0					14	5	3	0	0	0	0.12383	1	7758	7758		91.265	57.344	1	924380			50819	3669	33578	33721	51470	51470					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	605.77783203125	2	605.778002	1209.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.18	1	23.18	22.68	23.68	0								0	0	0	0.070616	1	6929	6929		85.862	41.745	1				50820	3669	33578	33721	51471	51471					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.1875305175781	3	404.18776	1209.54145	0.040619	1.6418E-05	-0.65308	-0.00026397	-0.61246	-0.00024755	404.18746627744326	23.37	0.26678	23.37	23.263	23.529	0					12	5	4	0	0	0	0.55603	1	8056	8056		51.528	31.531	1	420960			50821	3669	33578	33721	51472	51472					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	605.7782592773438	2	605.778002	1209.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.206	1	23.206	22.706	23.706	0								0	0	0	0.17743	1	7044	7044		66.962	28.156	1				50822	3669	33578	33721	51473	51473					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	605.778564453125	2	605.778002	1209.54145	0.44261	0.00026812	-0.55262	-0.00033476	-0.11001	-6.6641E-05	605.7778306511643	23.21	0.14405	23.21	23.123	23.267	0					6	3	2	0	0	0	0.23612	1	7061	7061		75.043	35.79	1	64976			50823	3669	33578	33721	51474	51474					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	605.7781372070312	2	605.778002	1209.54145	0.027568	1.67E-05	0.043843	2.6559E-05	0.071412	4.326E-05	605.7780256684864	23.344	0.31711	23.344	23.235	23.552	0					15	6	3	0	0	0	0.0071914	1	7892	7892		157.34	106.01	1	800010			50824	3669	33578	33721	51475	51475					-0.054938384014121766
YVHDDGRVSY	10	Unmodified	_YVHDDGRVSY_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	605.7781982421875	2	605.778002	1209.54145	1.8002	0.0010905	-1.4243	-0.00086281	0.37595	0.00022774	605.7769949803732	23.327	0.36701	23.327	23.218	23.585	0					13	7	3	0	0	0	0.006574	1	7905	7905		160.82	94.393	1	972200			50825	3669	33578	33721	51476	51476					-0.054938384014121766
YVHLSEAVL	9	Unmodified	_YVHLSEAVL_					0	0	0		WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;nc|ENSG00000171804|Q6ZQQ6|WDR87	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	515.7804565429688	2	515.782025	1029.5495	0.03301	1.7026E-05	-0.24544	-0.00012659	-0.21242	-0.00010956	515.7819534388112	36.282	0.45038	36.282	36.008	36.458	0					31	12	4	0	0	0	0.30268	1	13607	13607		50.025	50.025	1	2369600			50826	6321	33579	33722	51477	51477					0.03590340585992635
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(78)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	525.2476196289062	2	525.247295	1048.48004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.673	1	26.673	26.173	27.173	0								0	0	0	1.7419	1	8136	8136		77.944	31.177	1				50827	4342	33580	33723	51478	51478		177			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(96)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	525.2474975585938	2	525.247295	1048.48004	0.095762	5.0299E-05	0.84379	0.0004432	0.93955	0.0004935	525.2474129295782	26.884	0.41625	26.884	26.792	27.209	0					19	10	2	0	0	0	0.25916	1	9332	9332		96.048	40.544	1	609570			50828	4342	33580	33723	51479	51479		177			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(87)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	525.2476196289062	2	525.247295	1048.48004	0.15219	7.9936E-05	0.46411	0.00024377	0.6163	0.00032371	525.2475868534086	27.047	0.66084	27.047	26.795	27.455	0					28	13	3	0	0	0	0.28675	1	9697	9697		86.935	40.168	1	537100			50829	4342	33580	33723	51480	51480		177			-0.04226441634409639
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	517.2501831054688	2	517.249837	1032.48512	0.044439	2.2986E-05	-0.21246	-0.00010989	-0.16802	-8.6908E-05	517.2499057853814	33.78	0.49473	33.78	33.687	34.181	0					27	13	3	0	0	0	0.22885	1	12531	12531		100.27	53.506	1	1434800			50830	4342	33580	33724	51481	51481					-0.02982137771800808
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	517.249755859375	2	517.249837	1032.48512	-0.46423	-0.00024012	0.30301	0.00015673	-0.16122	-8.3392E-05	517.2501011133439	33.793	0.90092	33.793	33.667	34.568	0					46	22	4	0	0	0	0.13355	1	12950	12950		167.23	98.139	1	2399400			50831	4342	33580	33724	51482	51482					-0.02982137771800808
YVHQVERDD	9	Unmodified	_YVHQVERDD_					0	0	0			REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF	REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	387.5169982910156	3	387.515877	1159.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.421	1	40.421	39.921	40.921	0								0	0	0	0.3368	1	16047	16047		27.882	1.1893	1		+		50832	20154	33581	33725	51483	51483					-0.047581249184759145
YVHQWHQCG	9	Carbamidomethyl (C)	_YVHQWHQC(Carbamidomethyl (C))G_	YVHQWHQC(1)G		YVHQWHQC(50)G		0	1	0			REV__HELB|p.R906C|1|0.13|ENSG00000127311|chr12:66331199-66331199|C/T|missense_variant	REV__HELB|p.R906C|1|0.13|ENSG00000127311|chr12:66331199-66331199|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	607.7630004882812	2	607.761632	1213.50871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.225	1	27.225	26.725	27.725	0								0	0	0	0.20652	1	9840	9840		50.025	17.212	1		+		50833	20722	33582	33726	51484	51484	718				-0.08950324005286348
YVIGWVFVW	9	Unmodified	_YVIGWVFVW_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;P2RX4|p.T223Qfs*13|1|0.34|ENSG00000135124|chr12:121228783-121228783|A/-|frameshift_variant;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	390.21173095703125	3	390.211177	1167.6117	0.87344	0.00034083	0.60125	0.00023461	1.4747	0.00057544	390.21140324467177	23.184	0.27502	23.184	23.049	23.324	0					19	6	5	0	0	0	0.25109	1	7626	7626		55.504	55.504	1	7848800			50834	3969	33583	33727	51485	51485					0.03460111724984927
YVIMYIEYL	9	Unmodified	_YVIMYIEYL_					0	0	0			REV__ENST00000553544.1_1_14:35465915-35466038:+|nuORF	REV__ENST00000553544.1_1_14:35465915-35466038:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	603.8111572265625	2	603.809393	1205.60423	3.0382	0.0018345	0.22672	0.00013689	3.2649	0.0019714	604.3109681377664	45.499	0.23345	45.499	45.412	45.646	0					14	8	2	0	0	0	0.43426	1	18220	18220		38.806	7.2763	1	163880	+		50835	20223	33584	33728	51486	51486					0.009655913424012397
YVIQQGAF	8	Unmodified	_YVIQQGAF_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19;LRRC19|p.Q125Pfs*17|1|0.09|ENSG00000184434|chr9:26997949-26997950|-/TTATATG|frameshift_variant	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	463.24249267578125	2	463.242535	924.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.653	1	43.653	43.153	44.153	0								0	0	0	1.7419	1	17476	17476		44.531	7.372	1				50836	7016	33585	33729	51487	51487					0.0052611335171377505
YVKLMIKL	8	Unmodified	_YVKLMIKL_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	504.3216857910156	2	504.319731	1006.62491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.617	1	15.617	15.117	16.117	0								0	0	0	1.7419	1	4071	4071		20.482	2.1574	1		+		50837	13740	33586	33730	51488	51488					0.12186226512721987
YVKLPGKIK	9	Unmodified	_YVKLPGKIK_					0	0	0			REV__ENST00000409682.7_1_2:162267931-162268081:+|nuORF	REV__ENST00000409682.7_1_2:162267931-162268081:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	349.2316589355469	3	349.23046	1044.66955	3.0348	0.0010599	0.057513	2.0085E-05	3.0924	0.0010799	349.2305523587891	21.662	0.16598	21.662	21.555	21.721	0					8	3	3	0	0	0	0.35021	1	7101	7101		45.972	6.7194	1	689490	+		50838	19000	33587	33731	51489	51489					0.14900373650425536
YVKLQLTQ	8	Unmodified	_YVKLQLTQ_					0	0	0			REV__ENSG00000158714|ENST00000289707|SLAMF8	REV__ENSG00000158714|ENST00000289707|SLAMF8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	496.7925720214844	2	496.792392	991.570232	-0.3338	-0.00016583	-0.83396	-0.0004143	-1.1678	-0.00058013	496.7918743879301	38.209	0.30343	38.209	38.087	38.391	0					20	12	2	0	0	0	0.53424	1	14489	14489		56.721	5.5284	1	431540	+		50839	15691	33588	33732	51490	51490					0.07410930965670559
YVLEGHDF	8	Unmodified	_YVLEGHDF_					0	0	0			REV__ENST00000426647.2_1_7:32852458-32867019:+|nuORF	REV__ENST00000426647.2_1_7:32852458-32867019:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	490.22869873046875	2	490.229625	978.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.772	1	27.772	27.272	28.272	0								0	0	0	1.7419	1	8888	8888		19.36	1.0356	1		+		50840	16536	33589	33733	51491	51491					-0.04538780890561611
YVLFIFVGQ	9	Unmodified	_YVLFIFVGQ_					0	0	0			REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2	REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.3740234375	2	543.305136	1084.59572	3.6293	0.0019718	0.15692	8.5257E-05	3.7862	0.0020571	543.3050232279714	15.338	0.46734	15.338	14.978	15.445	0					28	9	4	0	0	0	0.30951	1	3915	3915		25.45	0	1	1731400	+		50841	14489	33590	33734	51492	51492					0.05680405488078577
YVLGHVTL	8	Unmodified	_YVLGHVTL_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;SLC12A9|p.R676Gfs*18|1|0.3|ENSG00000146828|chr7:100865882-100865882|C/-|frameshift_variant;ENSG00000146828|ENST00000354161|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	451.26068115234375	2	451.260728	900.506903	0.87633	0.00039545	-0.97512	-0.00044003	-0.098787	-4.4579E-05	451.2602670885832	42.956	0.10622	42.956	42.928	43.035	0					5	3	2	0	0	0	0.72892	1	17179	17179		29.842	4.3914	1	89047			50842	4746	33591	33735	51493	51493					0.05266990248424008
YVLKGHIAVS	10	Unmodified	_YVLKGHIAVS_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.8192138671875	2	543.818941	1085.62333	0.34975	0.0001902	0.62433	0.00033952	0.97408	0.00052972	543.8190881708509	32.669	0.6495	32.669	32.369	33.019	0					30	16	2	0	0	0	0.61187	1	12078	12078		32.812	0	1	141350			50843	2512	33592	33736	51494	51494					0.08394308748324875
YVLKGHIAVS	10	Unmodified	_YVLKGHIAVS_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	543.8197021484375	2	543.818941	1085.62333	1.9962	0.0010856	-0.82188	-0.00044695	1.1743	0.00063863	543.8185514105719	31.934	0.30013	31.934	31.795	32.095	0					11	6	2	0	0	0	0.34667	1	12111	12111		62.107	7.3311	1	436570			50844	2512	33592	33736	51495	51495					0.08394308748324875
YVLVAMNEF	9	Unmodified	_YVLVAMNEF_					0	0	0		ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;nc|ENSG00000065361|P21860-2|ERBB3	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	543.2711791992188	2	543.270435	1084.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.609	1	42.609	42.109	43.109	0								0	0	0	0.16876	1	14028	14028		55.504	3.205	1				50845	1370	33593	33737	51496	51496					-0.012564215229986075
YVMHIAMN	8	Unmodified	_YVMHIAMN_					0	0	0			REV__ENSG00000075884|ENST00000295095|ARHGAP15	REV__ENSG00000075884|ENST00000295095|ARHGAP15	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	489.73175048828125	2	489.730423	977.446293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.303	1	43.303	42.803	43.803	0								0	0	0	1.7419	1	17325	17325		37.028	0	1		+		50846	13243	33594	33738	51497	51497					-0.043331863978210095
YVNIDDPLHN	10	Unmodified	_YVNIDDPLHN_					0	0	0			REV__LGMN|p.N201D|1|0.29|ENSG00000100600|chr14:92712814-92712814|T/C|missense_variant	REV__LGMN|p.N201D|1|0.29|ENSG00000100600|chr14:92712814-92712814|T/C|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2916870117188	2	600.288202	1198.56185	3.122	0.0018741	0.81497	0.00048922	3.9369	0.0023633	600.2888656522324	48.879	0.52777	48.879	48.498	49.025	0					43	28	2	0	0	0	0.49411	1	19352	19352		45.972	1.5951	1	73442	+		50847	20839	33595	33739	51498	51498					-0.029486677416116436
YVNISSVLV	9	Unmodified	_YVNISSVLV_					0	0	0			REV__nc|ENSG00000050628|P43115-5|PTGER3	REV__nc|ENSG00000050628|P43115-5|PTGER3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	497.2850036621094	2	497.2844	992.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.248	1	34.248	33.748	34.748	0								0	0	0	0.31838	1	12105	12105		31.53	4.7337	1		+		50848	20928	33596	33740	51499	51499					0.05767224728765541
YVNYGELKI	9	Unmodified	_YVNYGELKI_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	366.8669738769531	3	366.865847	1097.57571	3.1635	0.0011606	0.58799	0.00021571	3.7515	0.0013763	366.86615874192023	27.027	0.2696	27.027	26.968	27.238	0					10	5	3	0	0	0	0.48389	1	9640	9640		34.173	11.611	1	359480	+		50849	17155	33597	33741	51500	51500					0.03082609757461796
YVPGAPSPLG	10	Unmodified	_YVPGAPSPLG_					0	0	0			REV__ENST00000371064.7_1_X:128976053-128977321:-|nuORF	REV__ENST00000371064.7_1_X:128976053-128977321:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	479.25347900390625	2	479.255643	956.496732	-1.4247	-0.0006828	-3.5457	-0.0016993	-4.9704	-0.0023821	479.2539444226325	32.713	0.28178	32.713	32.519	32.801	0					18	11	2	0	0	0	0.64178	1	10951	10951		29.15	1.2673	1	73557	+		50850	18531	33598	33742	51501	51501					0.016743825231856135
YVPKEHIL	8	Unmodified	_YVPKEHIL_					0	0	0		ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-3|PRXL2B;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000484099.5_1_1:2518532-2520863:+|nuORF	ENSG00000157870|ENST00000419916|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	499.78741455078125	2	499.78711	997.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.89	1	37.89	37.39	38.39	0								0	0	0	1.7419	1	14843	14843		35.201	3.2459	1				50851	5234	33599	33743	51502	51502					0.06078948311221666
YVPPKSREL	9	Unmodified	_YVPPKSREL_					0	0	0		ENST00000567034.5_1_16:30199450-30200005:+|nuORF;ENSG00000102879|ENST00000219150|CORO1A	ENST00000567034.5_1_16:30199450-30200005:+|nuORF	ENST00000567034.5_1_16:30199450-30200005:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	544.8087768554688	2	544.808574	1087.60259	0.38284	0.00020857	-0.46302	-0.00025226	-0.080182	-4.3684E-05	544.8086098603554	22.332	0.60873	22.332	22.237	22.846	0					33	14	4	0	0	0	0.22837	1	7248	7248		34.173	7.4796	1	1346900			50852	2195	33600	33744	51503	51503					0.062297183686723656
YVPPKSREL	9	Unmodified	_YVPPKSREL_					0	0	0		ENST00000567034.5_1_16:30199450-30200005:+|nuORF;ENSG00000102879|ENST00000219150|CORO1A	ENST00000567034.5_1_16:30199450-30200005:+|nuORF	ENST00000567034.5_1_16:30199450-30200005:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	544.8092041015625	2	544.808574	1087.60259	-1.4957	-0.00081489	1.9254	0.001049	0.42963	0.00023407	544.8097086595683	22.11	0.22718	22.11	22.063	22.29	0					11	5	3	0	0	0	0.27123	1	6540	6540		30.318	0	1	203910			50853	2195	33600	33744	51504	51504					0.062297183686723656
YVPYDDPY	8	Unmodified	_YVPYDDPY_					0	0	0		F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5	F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	515.7225952148438	2	516.221465	1030.42838	0.18666	9.6355E-05	-1.2489	-0.00064472	-1.0623	-0.00054837	516.2212213666897	35.886	1.0105	35.886	35.586	36.596	0					35	20	4	0	0	0	0.67475	1	14126	14126		37.028	3.5129	1	424440			50854	7599	33601	33745	51505	51505					-0.08561906847330647
YVQFPTAIR	9	Unmodified	_YVQFPTAIR_					0	0	0			REV__CLUH|p.Q326Pfs*22|1|0.17|ENSG00000132361|chr17:2700760-2700761|-/G|frameshift_variant	REV__CLUH|p.Q326Pfs*22|1|0.17|ENSG00000132361|chr17:2700760-2700761|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	547.8048095703125	2	547.803291	1093.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.881	1	36.881	36.381	37.381	0								0	0	0	0.28666	1	12484	12484		37.812	3.8899	1		+		50855	12518	33602	33746	51506	51506					0.048977357142121036
YVQHWIDL	8	Unmodified	_YVQHWIDL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	537.2756958007812	2	537.274367	1072.53418	3.3411	0.0017951	-0.72503	-0.00038954	2.6161	0.0014055	537.274344873249	42.921	0.34459	42.921	42.802	43.146	0					21	10	3	0	0	0	0.5676	1	17152	17152		33.516	3.0119	1	145260			50856	6771	33603	33747	51507	51507					0.0008147378880494216
YVQQLKID	8	Unmodified	_YVQQLKID_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.7820739746094	2	503.782025	1005.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.186	1	24.186	23.686	24.686	0								0	0	0	1.7419	1	8433	8433		44.117	4.0586	1				50857	1272	33604	33748	51508	51508					0.04694340585979262
YVQSGPVQL	9	Unmodified	_YVQSGPVQL_					0	0	0			REV__nc|ENSG00000204634|O95759|TBC1D8	REV__nc|ENSG00000204634|O95759|TBC1D8	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	495.76727294921875	2	495.766374	989.518196	-0.037834	-1.8757E-05	0.50774	0.00025172	0.46991	0.00023296	495.76662048752684	41.244	0.21722	41.244	41.136	41.353	0					14	9	2	0	0	0	0.53064	1	16202	16202		29.17	0.020503	1	86254	+		50858	17494	33605	33749	51509	51509					0.023017675519099612
YVQSIRKY	8	Unmodified	_YVQSIRKY_					0	0	0			REV__ENST00000494248.1_1_7:77214868-77230160:+|nuORF	REV__ENST00000494248.1_1_7:77214868-77230160:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	528.7962646484375	2	528.795466	1055.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.585	1	26.585	26.085	27.085	0								0	0	0	1.7419	1	8377	8377		26.796	0	1		+		50859	19745	33606	33750	51510	51510					0.0508144919717779
YVQWGEKP	8	Unmodified	_YVQWGEKP_					0	0	0			REV__nc|ENSG00000118733|Q96PB7-4|OLFM3	REV__nc|ENSG00000118733|Q96PB7-4|OLFM3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	503.7528381347656	2	503.753267	1005.49198	-0.41661	-0.00020987	1.1071	0.00055771	0.69051	0.00034785	503.75392095390555	36.888	0.4043	36.888	36.681	37.086	0					15	8	3	0	0	0	0.66372	1	14434	14434		38.806	0	1	211660	+		50860	14225	33607	33751	51511	51511					-0.01054501619569237
YVRELYTV	8	Unmodified	_YVRELYTV_					0	0	0		nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;MCF2|p.R820Kfs*12|1|0.54|ENSG00000101977|chrX:139587779-139587780|-/T|frameshift_variant;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911-6|MCF2	nc|ENSG00000101977|P10911-6|MCF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	521.7826538085938	2	521.782025	1041.5495	0.079839	4.1658E-05	0.538	0.00028072	0.61783	0.00032237	521.7822069649037	33.18	0.68901	33.18	33.009	33.698	0					41	18	3	0	0	0	0.51384	1	12234	12234		38.806	3.1879	1	7408500			50861	2146	33608	33752	51512	51512					0.030383405859765844
YVRELYTV	8	Unmodified	_YVRELYTV_					0	0	0		nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;MCF2|p.R820Kfs*12|1|0.54|ENSG00000101977|chrX:139587779-139587780|-/T|frameshift_variant;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911-6|MCF2	nc|ENSG00000101977|P10911-6|MCF2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	521.782470703125	2	521.782025	1041.5495	1.7621	0.00091943	-0.76231	-0.00039776	0.99978	0.00052167	521.7816031678517	33.173	0.69213	33.173	32.962	33.654	0					34	15	3	0	0	0	0.61925	1	12671	12671		35.618	6.4687	1	7453700			50862	2146	33608	33752	51513	51513					0.030383405859765844
YVRFQGTAEE	10	Unmodified	_YVRFQGTAEE_					0	0	0			REV__ENSG00000105388|ENST00000221992|CEACAM5	REV__ENSG00000105388|ENST00000221992|CEACAM5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.290283203125	2	600.288202	1198.56185	3.1189	0.0018723	0.085178	5.1131E-05	3.2041	0.0019234	600.2882310154995	38.083	4.4869	38.083	37.92	42.407	0					281	102	5	0	0	0	0.39566	1	15094	15094		56.721	0	1	43019000	+		50863	13773	33609	33753	51514	51514					-0.029486677416116436
YVRPAEPAF	9	Unmodified	_YVRPAEPAF_					0	0	0		ENSG00000163807|ENST00000296121|KIAA1143	ENSG00000163807|ENST00000296121|KIAA1143	ENSG00000163807|ENST00000296121|KIAA1143	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.275146484375	2	525.274367	1048.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.603	1	21.603	21.103	22.103	0								0	0	0	0.34845	1	6293	6293		18.324	6.8134	1				50864	5611	33610	33754	51515	51515					0.01185473788791569
YVRPMQKEI	9	Unmodified	_YVRPMQKEI_					0	0	0		PAPPA2|p.I1437V|1|0.32|ENSG00000116183|chr1:176765823-176765823|A/G|missense_variant	PAPPA2|p.I1437V|1|0.32|ENSG00000116183|chr1:176765823-176765823|A/G|missense_variant	PAPPA2|p.I1437V|1|0.32|ENSG00000116183|chr1:176765823-176765823|A/G|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	388.5451354980469	3	388.546231	1162.61686	0.51827	0.00020137	-2.8924	-0.0011238	-2.3742	-0.00092248	388.545156835885	39.404	0.23968	39.404	39.287	39.526	0					9	5	2	0	0	0	0.55379	1	15574	15574		26.693	5.0072	1	72181			50865	11896	33611	33755	51516	51516					0.042060475253265395
YVRTAGASLL	10	Unmodified	_YVRTAGASLL_					0	0	0			REV__nc|ENSG00000147224|P60891-2|PRPS1	REV__nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	526.3023071289062	2	525.800749	1049.58694	1.7705	0.00093093	-1.5475	-0.0008137	0.22296	0.00011723	525.7999505435679	48.906	0.17044	48.906	48.834	49.005	0					17	10	2	0	0	0	0.66185	1	18452	18452		26.693	0	1	67031	+		50866	15339	33612	33756	51517	51517					0.06413431851615314
YVRTSGSSSQ	10	Unmodified	_YVRTSGSSSQ_					0	0	0		ENSG00000175691|ENST00000314531|ZNF77	ENSG00000175691|ENST00000314531|ZNF77	ENSG00000175691|ENST00000314531|ZNF77	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	536.2592163085938	2	536.256902	1070.49925	3.3525	0.0017978	1.0538	0.00056512	4.4063	0.0023629	536.2575139895334	26.678	0.31985	26.678	26.469	26.788	0					17	6	5	0	0	0	0.57211	1	9469	9469		37.508	8.3381	1	689000			50867	6570	33613	33757	51518	51518					-0.03317813809803738
YVSAQRLIG	9	Unmodified	_YVSAQRLIG_					0	0	0			REV__FBXW7|p.V485Ffs*13|1|0.25|ENSG00000109670|chr4:152326197-152326197|C/-|frameshift_variant	REV__FBXW7|p.V485Ffs*13|1|0.25|ENSG00000109670|chr4:152326197-152326197|C/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	503.78741455078125	2	503.787641	1005.56073	1.0181	0.0005129	-0.81166	-0.0004089	0.20642	0.00010399	503.7872194298078	17.592	3.7412	17.592	17.435	21.176	0					130	75	4	0	0	0	0.2873	1	5800	5800		51.335	7.2187	1	2854500	+		50868	20670	33614	33758	51519	51519					0.05817162680136789
YVSLATVGDEA	11	Unmodified	_YVSLATVGDEA_					0	0	0			REV__SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant	REV__SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7784423828125	2	562.777136	1123.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.007	1	42.007	41.507	42.507	0								0	0	0	0.43542	1	14732	14732		29.17	0	1		+		50869	15754	33615	33759	51520	51520					-0.01710892210030579
YVSLLSAQL	9	Unmodified	_YVSLLSAQL_					0	0	0			REV__ENST00000477592.2_1_6:3722960-3723107:-|nuORF	REV__ENST00000477592.2_1_6:3722960-3723107:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	497.2841491699219	2	497.2844	992.554247	-1.1513	-0.00057251	1.4867	0.0007393	0.3354	0.00016679	497.28523751268335	34.288	0.20154	34.288	34.183	34.384	0					16	9	2	0	0	0	0.45358	1	11543	11543		37.159	0	1	316490	+		50870	19554	33616	33760	51521	51521					0.05767224728754172
YVTDLILCME	10	Unmodified	_YVTDLILCME_					0	0	0			REV__ENST00000475777.2_1_12:110882884-110883061:-|nuORF	REV__ENST00000475777.2_1_12:110882884-110883061:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.2908935546875	2	600.287968	1198.56138	3.1189	0.0018723	0.47583	0.00028563	3.5948	0.0021579	600.2882310154995	38.083	4.4869	38.083	37.92	42.407	0					281	102	5	0	0	0	0.33577	1	15628	15628		63.306	6.5852	1	43019000	+		50871	19531	33617	33761	51522	51522					-0.02995546777333402
YVTRLGNAEP	10	Unmodified	_YVTRLGNAEP_					0	0	0		ENST00000343200.9_2_5:82767617-82767806:+|nuORF	ENST00000343200.9_2_5:82767617-82767806:+|nuORF	ENST00000343200.9_2_5:82767617-82767806:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.2959594726562	2	560.293288	1118.57202	3.4701	0.0019443	0.92302	0.00051716	4.3931	0.0024614	560.2936747769681	44.402	0.4229	44.402	44.304	44.726	0					43	17	4	0	0	0	0.536	1	17770	17770		41.427	5.8083	1	729490			50872	8745	33618	33762	51523	51523					0.017479399836020093
YVVGWGLGW	9	Unmodified	_YVVGWGLGW_					0	0	0			REV__ENST00000314940.6_1_5:137088427-137088670:-|nuORF	REV__ENST00000314940.6_1_5:137088427-137088670:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	518.7642211914062	2	518.766178	1035.5178	-1.3903	-0.00072126	-2.0154	-0.0010455	-3.4058	-0.0017668	518.7651148387461	21.09	0.38609	21.09	20.908	21.294	0					16	9	2	0	0	0	0.43174	1	6067	6067		39.021	14.819	1	142460	+		50873	18291	33619	33763	51524	51524					0.0014639262271884945
YVVKNVNAL	9	Unmodified	_YVVKNVNAL_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;ENSG00000172987|ENST00000370552|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	510.2973937988281	2	510.297842	1018.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.425	1	31.425	30.925	31.925	0								0	0	0	0.15865	1	10819	10819		57.811	4.8746	1				50874	6401	33620	33764	51525	51525					0.07258333339939327
YVVMYMLM	8	Unmodified	_YVVMYMLM_					0	0	0		tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	525.2472534179688	2	525.24706	1048.47957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.669	1	26.669	26.169	27.169	0								0	0	0	1.7419	1	8414	8414		43.626	1.1516	1				50875	22805	33621	33765	51526	51526					-0.04273320670154135
YVYEGVEAK	9	Unmodified	_YVYEGVEAK_					0	0	0		ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	529.2642211914062	2	529.263665	1056.51278	0.091401	4.8375E-05	0.68199	0.00036095	0.77339	0.00040933	529.2639710842941	27.359	0.11818	27.359	27.272	27.39	0					8	4	2	0	0	0	0.15163	1	8703	8703		67.494	21.542	1	111210			50876	4669	33622	33766	51527	51527					-0.013219560305742561
YVYEGVEAK	9	Unmodified	_YVYEGVEAK_					0	0	0		ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	529.2639770507812	2	529.263665	1056.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.591	1	27.591	27.091	28.091	0								0	0	0	0.095784	1	10014	10014		72.879	24.92	1				50877	4669	33622	33766	51528	51528					-0.013219560305742561
YVYEGVEAK	9	Unmodified	_YVYEGVEAK_					0	0	0		ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	529.2647094726562	2	529.263665	1056.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.43	1	27.43	26.93	27.93	0								0	0	0	0.20989	1	8972	8972		49.536	0.094497	1				50878	4669	33622	33766	51529	51529					-0.013219560305742561
YVYRDETL	8	Unmodified	_YVYRDETL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	530.259521484375	2	529.761289	1057.50803	0.11373	6.0248E-05	-4.0763	-0.0021595	-3.9626	-0.0020992	529.7588857747019	41.298	0.086269	41.298	41.241	41.327	0					7	4	2	0	0	0	0.63077	1	15693	15693		44.117	1.7207	1	43029			50879	7354	33623	33767	51530	51530					-0.018428401733444844
YVYVPDGKK	9	Unmodified	_YVYVPDGKK_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-3|MIA3	REV__nc|ENSG00000154305|Q5JRA6-3|MIA3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.789306640625	2	534.78985	1067.56515	3.3743	0.0018046	-3.1199	-0.0016685	0.25448	0.0001361	534.7881238411023	43.06	0.20599	43.06	42.972	43.178	0					9	5	2	0	0	0	0.45358	1	17267	17267		37.159	5.2042	1	125850	+		50880	15565	33624	33768	51531	51531					0.034066271030496864
YWDTVRPL	8	Unmodified	_YWDTVRPL_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	525.2727661132812	2	525.274367	1048.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.487	1	21.487	20.987	21.987	0								0	0	0	1.7419	1	6238	6238		23.042	0	1				50881	5318	33625	33769	51532	51532					0.011854737888143063
YWILSEGLDLK	11	Unmodified	_YWILSEGLDLK_					0	0	0		ENST00000479790.2_1_13:22067163-22067286:-|nuORF	ENST00000479790.2_1_13:22067163-22067286:-|nuORF	ENST00000479790.2_1_13:22067163-22067286:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	446.24090576171875	3	446.243094	1335.70745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.04	1	32.04	31.54	32.54	0								0	0	0	0.43372	1	10332	10332		29.551	3.4874	1				50882	9944	33626	33770	51533	51533					0.05302795054581111
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(64)HVQNTF	0	0	1		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	621.275146484375	2	621.274041	1240.53353	0.24868	0.0001545	-0.132	-8.201E-05	0.11667	7.2486E-05	621.2745040150332	36.575	0.18967	36.575	36.447	36.636	0					11	5	3	0	0	0	0.17854	1	13778	13778		64.207	36.325	1	52307			50883	2866	33627	33771	51534	51534		122			-0.07711688922563553
YWQNHPEL	8	Unmodified	_YWQNHPEL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	543.7544555664062	2	543.753798	1085.49304	0.35089	0.0001908	0.44982	0.00024459	0.80071	0.00043539	543.7539348605926	34.336	0.16681	34.336	34.246	34.413	0					10	4	3	0	0	0	0.43813	1	12784	12784		66.429	3.123	1	246590			50884	3101	33628	33772	51535	51535					-0.04628287250670837
YWQNHPEL	8	Unmodified	_YWQNHPEL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	543.754150390625	2	543.753798	1085.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.347	1	34.347	33.847	34.847	0								0	0	0	1.7419	1	13156	13156		84.916	26.134	1				50885	3101	33628	33772	51536	51536					-0.04628287250670837
YWRLDCKCI	9	Unmodified	_YWRLDCKCI_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;PRKD2|p.D633Tfs*5|1|0.38|ENSG00000105287|chr19:46689611-46689611|C/-|frameshift_variant;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	600.29052734375	2	600.288637	1198.56272	2.1031	0.0012625	0.48062	0.00028851	2.5837	0.001551	600.2889035934915	38.119	8.8448	38.119	37.932	46.777	0					509	271	6	0	0	0	0.30951	1	17085	17085		49.442	49.442	1	67330000			50886	2343	33629	33773	51537	51537					-0.028618678979228207
YWTVKKGDQ	9	Unmodified	_YWTVKKGDQ_					0	0	0			REV__nc|ENSG00000110619|P49589-2|CARS1	REV__nc|ENSG00000110619|P49589-2|CARS1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	562.7874755859375	2	562.790381	1123.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.979	1	32.979	32.479	33.479	0								0	0	0	0.3119	1	11528	11528		32.812	11.127	1		+		50887	13941	33630	33774	51538	51538					0.009368414719347129
YWVPRNAL	8	Unmodified	_YWVPRNAL_					0	0	0		ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	509.77703857421875	2	509.777077	1017.5396	3.0297	0.0015444	-4.2097	-0.002146	-1.1801	-0.00060156	509.7757350918518	39.706	0.36706	39.706	39.5	39.867	0					18	8	3	0	0	0	0.68754	1	15711	15711		35.201	1.0282	1	293220			50888	7687	33631	33775	51539	51539					0.03153197371273109
YWYFHRWAFQE	11	Unmodified	_YWYFHRWAFQE_					0	0	0			REV__ENST00000477729.1_1_15:60696796-60696997:+|nuORF	REV__ENST00000477729.1_1_15:60696796-60696997:+|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	816.8719482421875	2	816.872768	1631.73098	-1.655	-0.0013519	0.52411	0.00042813	-1.1309	-0.00092379	816.8734611132077	26.602	0.31758	26.602	26.443	26.761	0					10	6	2	0	0	0	0.83193	1	9556	9556		8.2351	0.43057	1	123980	+		50889	12488	33632	33776	51540	51540					-0.05961346388266975
YYCEQDGHF	9	Unmodified	_YYCEQDGHF_					0	0	0			REV__TAF5|p.F374Lfs*4|1|0.34|ENSG00000148835|chr10:103379611-103379611|T/-|frameshift_variant	REV__TAF5|p.F374Lfs*4|1|0.34|ENSG00000148835|chr10:103379611-103379611|T/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	581.2212524414062	2	581.218931	1160.42331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.714	1	32.714	32.214	33.214	0								0	0	0	0.38404	1	10591	10591		15.642	1.5047	1		+		50890	15397	33633	33777	51541	51541					-0.1504853398157593
YYCLLLIF	8	Carbamidomethyl (C)	_YYC(Carbamidomethyl (C))LLLIF_	YYC(1)LLLIF		YYC(44)LLLIF		0	1	0		ENSG00000256797|ENST00000535540|KLRF2	ENSG00000256797|ENST00000535540|KLRF2	ENSG00000256797|ENST00000535540|KLRF2	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	552.7952880859375	2	552.793546	1103.57254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.401	1	42.401	41.901	42.901	0								0	0	0	1.7419	1	16920	16920		43.626	12.096	1				50891	8029	33634	33778	51542	51542	348				0.024896433791127492
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	417.18927001953125	3	417.188989	1248.54514	1.0551	0.00044016	-1.0804	-0.00045072	-0.025294	-1.0552E-05	417.188550596144	34.203	0.39975	34.203	34.105	34.505	0					21	10	3	0	0	0	0.49003	1	12724	12724		40.778	18.199	1	171170			50892	2858	33635	33779	51543	51543					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	417.1890869140625	3	417.188989	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.02	1	34.02	33.52	34.52	0								0	0	0	0.30835	1	12001	12001		40.778	9.1439	1				50893	2858	33635	33779	51544	51544					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	625.2799682617188	2	625.279846	1248.54514	0.36118	0.00022584	-0.26146	-0.00016349	0.099717	6.2351E-05	625.279616702347	34.142	0.6967	34.142	34.037	34.734	0					33	14	3	0	0	0	0.0406	1	13069	13069		98.629	52.657	1	485550			50894	2858	33635	33779	51545	51545					-0.06919168627587169
YYDTHTNTY	9	Unmodified	_YYDTHTNTY_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	589.2435913085938	2	589.24346	1176.47237	0.14151	8.3386E-05	0.19627	0.00011565	0.33778	0.00019904	589.2435333853094	25.66	0.16588	25.66	25.578	25.744	0					12	5	3	0	0	0	0.035062	1	7740	7740		104.06	38.254	1	127820			50895	1351	33636	33780	51546	51546					-0.10880922420983552
YYDTHTNTY	9	Unmodified	_YYDTHTNTY_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	589.2437744140625	2	589.24346	1176.47237	0.17919	0.00010559	0.23857	0.00014058	0.41777	0.00024617	589.2435590119712	25.911	0.47208	25.911	25.732	26.204	0					19	9	3	0	0	0	0.003936	1	8863	8863		163.15	89.176	1	841390			50896	1351	33636	33780	51547	51547					-0.10880922420983552
YYDTHTNTY	9	Unmodified	_YYDTHTNTY_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	589.2432861328125	2	589.24346	1176.47237	0.092532	5.4524E-05	0.14103	8.3103E-05	0.23357	0.00013763	589.2436662386045	25.691	0.15302	25.691	25.607	25.76	0					7	4	2	0	0	0	0.037924	1	8012	8012		101.25	37.946	1	181920			50897	1351	33636	33780	51548	51548					-0.10880922420983552
YYDTHTNTY	9	Unmodified	_YYDTHTNTY_					0	0	0		SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.F466Lfs*59|1|0.11|ENSG00000064651|chr5:128135793-128135793|T/-|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	589.24365234375	2	589.24346	1176.47237	-0.14626	-8.6181E-05	1.1988	0.00070636	1.0525	0.00062018	589.2440475077277	25.908	0.54174	25.908	25.721	26.263	0					19	9	4	0	0	0	0.00073892	1	9201	9201		185.55	106.1	1	871210			50898	1351	33636	33780	51549	51549					-0.10880922420983552
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	604.2679443359375	2	604.266936	1206.51932	0.14821	8.9555E-05	0.52399	0.00031663	0.67219	0.00040618	604.2672565880262	31.201	0.43694	31.201	31.009	31.446	0					47	17	4	0	0	0	0.11898	1	9961	9961		75.043	30.666	1	838470			50899	1019	33637	33781	51550	51550					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	604.2672119140625	2	604.266936	1206.51932	-0.4196	-0.00025355	0.64524	0.0003899	0.22564	0.00013635	604.267334927927	31.449	0.86126	31.449	31.157	32.018	0					61	21	5	0	0	0	0.012231	1	11381	11381		136.27	86.827	1	5113100			50900	1019	33637	33781	51551	51551					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.267578125	2	604.266936	1206.51932	-0.59694	-0.00036071	1.0088	0.00060956	0.41182	0.00024885	604.2675996708008	31.251	0.42639	31.251	31.034	31.46	0					25	16	3	0	0	0	0.21263	1	10300	10300		60.118	24.5	1	252750			50901	1019	33637	33781	51552	51552					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	604.2673950195312	2	604.266936	1206.51932	0.37279	0.00022526	-0.33547	-0.00020272	0.037314	2.2548E-05	604.2669359661173	31.231	0.24696	31.231	31.124	31.371	0					17	9	3	0	0	0	0.063171	1	10321	10321		90.601	42.944	1	118470			50902	1019	33637	33781	51553	51553					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.267333984375	2	604.266936	1206.51932	0.69265	0.00041855	-0.3909	-0.00023621	0.30176	0.00018234	604.2667404826713	31.48	0.55245	31.48	31.257	31.81	0					34	12	4	0	0	0	0.011389	1	11846	11846		138.06	79.28	1	1776900			50903	1019	33637	33781	51554	51554					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	604.2673950195312	2	604.266936	1206.51932	0.38795	0.00023442	-0.18875	-0.00011406	0.19919	0.00012037	604.2668725031517	31.5	0.42038	31.5	31.281	31.702	0					27	9	4	0	0	0	0.15163	1	11815	11815		67.494	34.681	1	800610			50904	1019	33637	33781	51555	51555					-0.07568062869859205
YYEHVKARF	9	Unmodified	_YYEHVKARF_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	404.8767395019531	3	404.876857	1211.60874	-0.49451	-0.00020021	0.22411	9.0738E-05	-0.27039	-0.00010948	404.87692837832407	23.912	2.3961	23.912	23.768	26.164	0					97	54	4	0	0	0	0.35021	1	7969	7969		45.972	13.16	1	2614900			50905	2927	33638	33782	51556	51556					0.011402366001675546
YYEHVKARF	9	Unmodified	_YYEHVKARF_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.8767395019531	3	404.876857	1211.60874	0.41031	0.00016613	-0.65523	-0.00026529	-0.24492	-9.9161E-05	404.876533971948	23.862	0.81697	23.862	23.728	24.545	0					33	16	3	0	0	0	0.36892	1	8279	8279		44.377	16.495	1	253180			50906	2927	33638	33782	51557	51557					0.011402366001675546
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;NCOR1|p.R572Efs*18|1|0.07|ENSG00000141027|chr17:16121191-16121191|C/-|frameshift_variant;nc|ENSG00000141027|O75376-3|NCOR1;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	608.7975463867188	2	608.797872	1215.58119	0.82396	0.00050163	-0.48265	-0.00029383	0.34132	0.00020779	608.7971157751258	40.351	0.095486	40.351	40.273	40.369	0					6	4	2	0	0	0	0.36135	1	15892	15892		45.972	13.222	1	29248			50907	4422;7370	33639	33783	51558	51558					-0.017977114506948055
YYEMCWYV	8	Unmodified	_YYEMCWYV_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-3|KDM2B;KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	ENSG00000173120|ENST00000529006|KDM2A;KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	ENSG00000173120|ENST00000529006|KDM2A	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.72509765625	2	578.727546	1155.44054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.64	1	33.64	33.14	34.14	0								0	0	0	1.7419	1	11304	11304		9.4706	1.7803	1				50908	6406;1799	33640	33784	51559	51559					-0.1309632970014718
YYFELLHKQ	9	Unmodified	_YYFELLHKQ_					0	0	0		B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant;ENSG00000182272|ENST00000329962|B4GALNT4	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	620.8211059570312	2	620.821681	1239.62881	0.1773	0.00011007	-2.4725	-0.001535	-2.2952	-0.0014249	620.8200696502954	23.535	0.71387	23.535	23.135	23.849	0					35	23	2	0	0	0	0.61124	1	6747	6747		18.324	1.8513	1	53665			50909	270	33641	33785	51560	51560					0.01857987540142858
YYGDECEC	8	Unmodified	_YYGDECEC_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	491.15167236328125	2	491.151868	980.289184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.312	1	49.312	48.812	49.812	0								0	0	0	1.7419	1	15438	15438		8.2313	1.0379	1		+		50910	14794	33642	33786	51561	51561					-0.2017493579866141
YYGYPPRQN	9	Unmodified	_YYGYPPRQN_					0	0	0			REV__ENSG00000235272|ENST00000444122|RAMACL	REV__ENSG00000235272|ENST00000444122|RAMACL	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	579.271484375	2	579.272355	1156.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.516	1	46.516	46.016	47.016	0								0	0	0	0.29985	1	17176	17176		35.201	7.3185	1		+		50911	16323	33643	33787	51562	51562					-0.04184615704912176
YYHDALWLAI	10	Unmodified	_YYHDALWLAI_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2;REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	632.8200073242188	2	632.821681	1263.62881	-0.73703	-0.00046641	-0.57838	-0.00036601	-1.3154	-0.00083242	632.8213949057837	40.43	0.5207	40.43	40.143	40.664	0					33	29	2	0	0	0	0.69166	1	13505	13505		23.042	1.3567	1	55239	+		50912	15713;21087	33644	33788	51563	51563					0.007539875401334939
YYIFTLLL	8	Unmodified	_YYIFTLLL_					0	0	0			REV__ENST00000243347.4_1_2:152236083-152236167:+|nuORF	REV__ENST00000243347.4_1_2:152236083-152236167:+|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	523.3041381835938	2	523.302062	1044.58957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.276	1	50.276	49.776	50.776	0								0	0	0	1.7419	1	15657	15657		26.796	3.2734	1		+		50913	17933	33645	33789	51564	51564					0.06905887256561982
YYIGDQSNF	9	Unmodified	_YYIGDQSNF_					0	0	0		SLC6A14|p.A299D|1|0.39|ENSG00000268104|chrX:116446847-116446847|C/A|missense_variant	SLC6A14|p.A299D|1|0.39|ENSG00000268104|chrX:116446847-116446847|C/A|missense_variant	SLC6A14|p.A299D|1|0.39|ENSG00000268104|chrX:116446847-116446847|C/A|missense_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.74462890625	2	553.743096	1105.47164	3.6205	0.0020048	-0.59549	-0.00032975	3.025	0.0016751	553.7429053205875	33.574	0.61892	33.574	33.466	34.085	0					34	13	6	0	0	0	0.030949	1	12762	12762		108.09	19.445	1	12014000			50914	22417	33646	33790	51565	51565					-0.07687717070029976
YYIGTSIDAPL	11	Unmodified	_YYIGTSIDAPL_					0	0	0			REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	405.2113342285156	3	404.876411	1211.6074	-0.11373	-4.6047E-05	1.2657	0.00051244	1.1519	0.00046639	404.8768026055898	23.748	0.63169	23.748	23.561	24.193	0					27	21	2	0	0	0	0.71641	1	6881	6881		26.063	0.48933	1	134100	+		50915	14778	33647	33791	51566	51566					0.010065577207797105
YYIGTSIDAPL	11	Unmodified	_YYIGTSIDAPL_					0	0	0			REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.87664794921875	3	404.876411	1211.6074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.747	1	23.747	23.247	24.247	0								0	0	0	0.45674	1	7177	7177		15.333	6.1213	1		+		50916	14778	33647	33791	51567	51567					0.010065577207797105
YYIPLVELV	9	Unmodified	_YYIPLVELV_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	555.3178100585938	2	554.818076	1107.6216	-0.047152	-2.6161E-05	-2.476	-0.0013737	-2.5232	-0.0013999	555.3182685017364	32.955	0.13964	32.955	32.864	33.003	0					5	3	2	0	0	0	0.39215	1	12579	12579		44.531	3.7529	1	84198			50917	5800	33648	33792	51568	51568					0.07209254939721177
YYITTRLFW	9	Unmodified	_YYITTRLFW_					0	0	0		nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000164023|ENST00000690982|SGMS2;ENSG00000198964|ENST00000361781|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	421.5575866699219	3	421.557125	1261.64954	1.0541	0.00044437	-0.017558	-7.4019E-06	1.0365	0.00043696	421.5571079641772	15.74	0.116	15.74	15.681	15.797	0					6	2	3	0	0	0	0.60749	1	4229	4229		20.947	1.6843	1	480830			50918	5639	33649	33793	51569	51569					0.02918577919786003
YYKGVKKV	8	Unmodified	_YYKGVKKV_					0	0	0		tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	492.7955627441406	2	492.797478	983.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15	1	15	14.5	15.5	0								0	0	0	1.7419	1	3860	3860		25.45	1.2474	1				50919	22735	33650	33794	51570	51570					0.08795538690912963
YYKNIGLGF	9	Unmodified	_YYKNIGLGF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	537.784912109375	2	537.784567	1073.55458	0.22281	0.00011983	1.3075	0.00070314	1.5303	0.00082296	537.7854040138195	43.331	0.15879	43.331	43.246	43.405	0					13	9	2	0	0	0	0.18605	1	16346	16346		63.306	17.334	1	57907			50920	4496	33651	33795	51571	51571					0.02074644448634899
YYKSTSSAF	9	Unmodified	_YYKSTSSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	527.2482299804688	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.395	1	26.395	25.895	26.895	0								0	0	0	0.063706	1	8296	8296		82.241	2.7895	1				50921	7425	33652	33796	51572	51572					-0.04266529064648239
YYKSTSSAF	9	Unmodified	_YYKSTSSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	527.2481689453125	2	527.248015	1052.48148	1.756	0.00092582	1.3168	0.00069427	3.0727	0.0016201	527.2477243099266	26.606	0.41866	26.606	26.46	26.879	0					24	8	4	0	0	0	0.01873	1	9585	9585		124.08	57.651	1	534520			50922	7425	33652	33796	51573	51573					-0.04266529064648239
YYKSTSSAF	9	Unmodified	_YYKSTSSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.248291015625	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.544	1	26.544	26.044	27.044	0								0	0	0	0.21054	1	8562	8562		49.442	6.9671	1				50923	7425	33652	33796	51574	51574					-0.04266529064648239
YYKSTSSAF	9	Unmodified	_YYKSTSSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	527.2478637695312	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.524	1	26.524	26.024	27.024	0								0	0	0	0.14881	1	8552	8552		60.118	23.09	1				50924	7425	33652	33796	51575	51575					-0.04266529064648239
YYKSTSSAF	9	Unmodified	_YYKSTSSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.2487182617188	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.625	1	26.625	26.125	27.125	0								0	0	0	0.00097936	1	9430	9430		127.46	19.374	1				50925	7425	33652	33796	51576	51576					-0.04266529064648239
YYKSTSSAF	9	Unmodified	_YYKSTSSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	527.248291015625	2	527.248015	1052.48148	3.473	0.0018311	0.30565	0.00016115	3.7786	0.0019923	527.2477278693684	26.607	0.37108	26.607	26.417	26.788	0					25	7	4	0	0	0	0.13267	1	9444	9444		71.877	10.906	1	740440			50926	7425	33652	33796	51577	51577					-0.04266529064648239
YYLELCERPV	10	Unmodified	_YYLELCERPV_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000587153.1_1_18:21083537-21084412:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	642.81884765625	2	642.818281	1283.62201	0.2166	0.00013924	1.7264	0.0011098	1.943	0.001249	642.8193717586112	26.655	0.13806	26.655	26.581	26.719	0					6	4	2	0	0	0	0.32758	1	8119	8119		64.207	5.5777	1	95586			50927	4447	33653	33797	51578	51578					-0.00845693402766301
YYLFLGLI	8	Unmodified	_YYLFLGLI_					0	0	0		tr|U7T535|U7T535_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00420PE=4SV=1	tr|U7T535|U7T535_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00420PE=4SV=1	tr|U7T535|U7T535_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00420PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	501.29034423828125	2	501.288954	1000.56336	2.9237	0.0014656	0.21985	0.00011021	3.1435	0.0015758	501.2889657505489	49.269	1.5544	49.269	49.108	50.662	0					213	79	4	0	0	0	0.79882	1	19633	19633		16.705	16.705	1	866740			50928	23002	33654	33798	51579	51579					0.06309618085094826
YYLFPSLE	8	Unmodified	_YYLFPSLE_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	516.258544921875	2	516.257851	1030.50115	-0.51213	-0.00026439	1.7163	0.00088603	1.2041	0.00062164	516.2587207691919	23.036	0.21769	23.036	22.978	23.195	0					8	4	3	0	0	0	0.55361	1	7896	7896		54.765	26.51	1	255090			50929	2797	33655	33799	51580	51580					-0.01288153053883434
YYLGKKNY	8	Unmodified	_YYLGKKNY_					0	0	0		tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	524.7752075195312	2	524.776742	1047.53893	1.7797	0.00093393	-1.0218	-0.0005362	0.75791	0.00039773	524.775670232757	32.409	0.57503	32.409	32.274	32.849	0					19	14	2	0	0	0	0.54629	1	12326	12326		54.765	3.2369	1	823850			50930	22941	33656	33800	51581	51581					0.01706357931561797
YYLNDILVEA	10	Unmodified	_YYLNDILVEA_					0	0	0		tr|U7T2Z5|U7T2Z5_FUSNUAdenylate-formingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00518PE=4SV=1	tr|U7T2Z5|U7T2Z5_FUSNUAdenylate-formingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00518PE=4SV=1	tr|U7T2Z5|U7T2Z5_FUSNUAdenylate-formingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00518PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	404.8778381347656	3	404.876411	1211.6074	1.0448	0.00042301	1.7232	0.00069768	2.768	0.0011207	404.87721419378386	35.051	0.46937	35.051	34.924	35.393	0					16	13	2	0	0	0	0.69544	1	13559	13559		22.58	0	1	83194			50931	22957	33657	33801	51582	51582					0.010065577207797105
YYLTKTLY	8	Unmodified	_YYLTKTLY_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	532.784912109375	2	532.786776	1063.559	1.1441	0.00060956	-2.8624	-0.0015251	-1.7183	-0.0009155	532.7846652395814	34.534	0.21128	34.534	34.411	34.623	0					9	6	2	0	0	0	0.6088	1	12241	12241		45.952	6.6991	1	48360			50932	2369	33658	33802	51583	51583					0.029761088715531514
YYLVQGLIED	10	Unmodified	_YYLVQGLIED_					0	0	0		ENST00000563264.1_1_16:29922856-29934675:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13	ENST00000563264.1_1_16:29922856-29934675:-|nuORF	ENST00000563264.1_1_16:29922856-29934675:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	404.876953125	3	404.876411	1211.6074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.741	1	51.741	51.241	52.241	0								0	0	0	0.4201	1	20198	20198		17.468	0.30126	1				50933	6523	33659	33803	51584	51584					0.010065577207797105
YYNGKFPK	8	Unmodified	_YYNGKFPK_					0	0	0		tr|U7T159|U7T159_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00702PE=4SV=1	tr|U7T159|U7T159_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00702PE=4SV=1	tr|U7T159|U7T159_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00702PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	508.76275634765625	2	508.763635	1015.51272	0.94685	0.00048172	-1.6421	-0.00083544	-0.69525	-0.00035372	508.7625608833611	21.93	0.19692	21.93	21.801	21.998	0					6	5	2	0	0	0	0.75243	1	6128	6128		26.796	1.222	1	34849			50934	22914	33660	33804	51585	51585					0.0055808876010132735
YYNKVSTVF	9	Unmodified	_YYNKVSTVF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	560.7872314453125	2	560.787307	1119.56006	1.7927	0.0010053	-0.3741	-0.00020979	1.4186	0.00079552	560.7869517738117	36.6	0.084526	36.6	36.563	36.647	0					4	2	2	0	0	0	0.37197	1	13828	13828		44.117	9.9443	1	64389			50935	2488	33661	33805	51586	51586					0.005063232404381779
YYNKVSTVF	9	Unmodified	_YYNKVSTVF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	560.7871704101562	2	560.787307	1119.56006	1.8133	0.0010169	-0.92056	-0.00051624	0.89272	0.00050063	560.7866914950729	36.57	0.3837	36.57	36.455	36.839	0					23	11	4	0	0	0	0.095583	1	14245	14245		80.455	29.119	1	665900			50936	2488	33661	33805	51587	51587					0.005063232404381779
YYNKVSTVF	9	Unmodified	_YYNKVSTVF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	560.7875366210938	2	560.787307	1119.56006	1.8103	0.0010152	-1.0719	-0.00060113	0.73837	0.00041407	560.7866696364688	36.523	0.56614	36.523	36.411	36.977	0					22	11	4	0	0	0	0.01873	1	14212	14212		124.08	55.293	1	981660			50937	2488	33661	33805	51588	51588					0.005063232404381779
YYNVWLRAQ	9	Unmodified	_YYNVWLRAQ_					0	0	0		ENST00000518062.1_1_5:158588183-158590023:-|nuORF;RNF145|p.T570Sfs*23|1|0.07|ENSG00000145860|chr5:159158953-159158954|-/AGCATAC|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	404.87689208984375	3	404.876857	1211.60874	-1.369	-0.00055426	1.0462	0.00042359	-0.32275	-0.00013067	404.87727204338046	23.724	0.58112	23.724	23.642	24.223	0					27	19	3	0	0	0	0.60749	1	7165	7165		20.947	1.8434	1	120570			50938	4696	33662	33806	51589	51589					0.01140236600190292
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;ENSG00000129292|ENST00000395386|PHF20L1;nc|ENSG00000129292|A8MW92-2|PHF20L1;PHF20L1|p.N322Mfs*42|5|0.3|ENSG00000129292|chr8:132814664-132814664|A/-|frameshift_variant;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;PHF20L1|p.V535*|4|0.38|ENSG00000129292|chr8:132824019-132824019|A/-|frameshift_variant;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant;PHF20L1-CHMP1A|1|fusion	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	534.2926025390625	2	534.292225	1066.5699	-1.3304	-0.00071081	1.8136	0.00096898	0.4832	0.00025817	534.7949809052627	37.272	0.082962	37.272	37.223	37.306	0					6	4	2	0	0	0	0.55379	1	13351	13351		19.36	0	1	67975			50939	3590	33663	33807	51590	51590					0.039275112458199146
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;ENSG00000129292|ENST00000395386|PHF20L1;nc|ENSG00000129292|A8MW92-2|PHF20L1;PHF20L1|p.N322Mfs*42|5|0.3|ENSG00000129292|chr8:132814664-132814664|A/-|frameshift_variant;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;PHF20L1|p.V535*|4|0.38|ENSG00000129292|chr8:132824019-132824019|A/-|frameshift_variant;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant;PHF20L1-CHMP1A|1|fusion	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	534.2927856445312	2	534.292225	1066.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.433	1	37.433	36.933	37.933	0								0	0	0	0.25045	1	14634	14634		36.447	21.582	1				50940	3590	33663	33807	51591	51591					0.039275112458199146
YYPPGVVVY	9	Unmodified	_YYPPGVVVY_					0	0	0		RXFP3|p.R459Afs*31|1|0.5|ENSG00000182631|chr5:33938109-33938109|G/-|frameshift_variant;ENSG00000182631|ENST00000330120|RXFP3	RXFP3|p.R459Afs*31|1|0.5|ENSG00000182631|chr5:33938109-33938109|G/-|frameshift_variant	RXFP3|p.R459Afs*31|1|0.5|ENSG00000182631|chr5:33938109-33938109|G/-|frameshift_variant	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	528.7713623046875	2	528.773668	1055.53278	0.50662	0.00026789	-2.969	-0.0015699	-2.4623	-0.001302	528.7722296736079	34.451	0.13847	34.451	34.375	34.513	0					10	6	2	0	0	0	0.43174	1	11261	11261		39.021	1.8624	1	73413			50941	6909	33664	33808	51592	51592					0.0072383970007194876
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	578.288818359375	2	578.287671	1154.56079	0.81336	0.00047036	-0.31747	-0.00018359	0.49589	0.00028677	578.2874270009287	27.838	0.19884	27.838	27.708	27.907	0					14	6	3	0	0	0	0.056004	1	8596	8596		93.143	53.89	1	191810			50942	1227	33665	33809	51593	51593					-0.010308821105354582
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	578.2879028320312	2	578.287671	1154.56079	-0.060194	-3.4809E-05	0.49805	0.00028801	0.43785	0.0002532	578.2880032843472	28.04	0.34579	28.04	27.862	28.208	0					26	8	4	0	0	0	5.5435E-08	1	9855	9855		209.19	124.28	1	914590			50943	1227	33665	33809	51594	51594					-0.010308821105354582
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	578.2876586914062	2	578.287671	1154.56079	-0.10946	-6.3302E-05	0.32958	0.00019059	0.22012	0.00012729	578.2880001155024	27.828	0.29597	27.828	27.664	27.96	0					15	10	2	0	0	0	0.15163	1	8886	8886		67.494	25.098	1	109270			50944	1227	33665	33809	51595	51595					-0.010308821105354582
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.288330078125	2	578.287671	1154.56079	-0.42249	-0.00024432	1.0552	0.00061021	0.63272	0.0003659	578.2883215595274	28.079	0.39446	28.079	27.88	28.275	0					22	8	4	0	0	0	0.022525	1	10214	10214		117.81	71.839	1	770870			50945	1227	33665	33809	51596	51596					-0.010308821105354582
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	578.2877197265625	2	578.287671	1154.56079	-1.6461	-0.00095192	1.9909	0.0011513	0.34477	0.00019938	578.2887104930281	27.861	0.17908	27.861	27.773	27.952	0					7	4	2	0	0	0	0.048471	1	9178	9178		95.815	49.863	1	147140			50946	1227	33665	33809	51597	51597					-0.010308821105354582
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	578.287841796875	2	578.287671	1154.56079	3.2621	0.0018864	-0.88578	-0.00051223	2.3763	0.0013742	578.2861199162288	28.027	0.51551	28.027	27.729	28.245	0					26	10	4	0	0	0	1.204E-12	1	10098	10098		223.88	135.7	1	746280			50947	1227	33665	33809	51598	51598					-0.010308821105354582
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T	1	569.801513671875	2	569.300581	1136.58661	1.1438	0.00065118	-1.4257	-0.00081164	-0.28186	-0.00016046	569.2994437985226	36.873	0.14642	36.873	36.793	36.939	0					9	7	2	0	0	0	0.45358	1	12069	12069		37.159	3.2375	1	68532			50948	2952	33666	33810	51599	51599					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	569.3004150390625	2	569.300581	1136.58661	0.079785	4.5422E-05	0.31616	0.00017999	0.39595	0.00022541	569.3007201497985	37.139	0.26578	37.139	37.026	37.292	0					18	7	4	0	0	0	0.087861	1	14044	14044		82.241	36.289	1	385090			50949	2952	33666	33810	51600	51600					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3007202148438	2	569.300581	1136.58661	1.9698	0.0011214	-1.7987	-0.001024	0.1711	9.7408E-05	569.2993882064656	37.089	0.24572	37.089	36.991	37.237	0					13	7	2	0	0	0	0.19605	1	14509	14509		62.107	3.8775	1	285850			50950	2952	33666	33810	51601	51601					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	569.3012084960938	2	569.300581	1136.58661	0.18452	0.00010505	0.043422	2.472E-05	0.22794	0.00012977	569.3008245264272	37.108	0.17574	37.108	37.015	37.191	0					8	5	2	0	0	0	0.0792	1	14488	14488		84.916	30.193	1	112850			50951	2952	33666	33810	51602	51602					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	569.3012084960938	2	569.300581	1136.58661	-1.3189	-0.00075088	3.4874	0.0019854	2.1685	0.0012345	569.3021442491533	36.889	0.12271	36.889	36.825	36.947	0					8	5	2	0	0	0	0.15163	1	13197	13197		67.494	16.301	1	64985			50952	2952	33666	33810	51603	51603					0.023780121317713565
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	575.7747192382812	2	575.774396	1149.53424	-0.092801	-5.3432E-05	0.49443	0.00028468	0.40163	0.00023125	575.7746642843601	43.314	0.25871	43.314	43.197	43.456	0					34	15	3	0	0	0	0.047855	1	16338	16338		96.034	20.99	1	252810			50953	5731	33667	33811	51604	51604					-0.03454571001839213
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	576.2783203125	2	575.774396	1149.53424	1.8477	0.0010639	0.09131	5.2574E-05	1.939	0.0011164	575.774227083425	43.282	0.23975	43.282	43.183	43.423	0					29	13	3	0	0	0	0.035062	1	16934	16934		104.06	43.085	1	235770			50954	5731	33667	33811	51605	51605					-0.03454571001839213
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T	5	575.7752685546875	2	575.774396	1149.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.049	1	43.049	42.549	43.549	0								0	0	0	0.15687	1	14969	14969		58.23	8.6939	1				50955	5731	33667	33811	51606	51606					-0.03454571001839213
YYSVRSVF	8	Unmodified	_YYSVRSVF_					0	0	0			REV__tr|U7SV61|U7SV61_FUSNUSalt-inducedoutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01142PE=4SV=1	REV__tr|U7SV61|U7SV61_FUSNUSalt-inducedoutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01142PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T	2	511.26019287109375	2	510.761092	1019.50763	0.98201	0.00050157	-3.7487	-0.0019147	-2.7667	-0.0014131	510.76084121073336	39.561	0.13968	39.561	39.504	39.644	0					10	5	2	0	0	0	0.63077	1	15065	15065		44.117	1.7207	1	117690	+		50956	21989	33668	33812	51607	51607					-0.0013421510251419022
YYTDIMHTL	9	Unmodified	_YYTDIMHTL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	578.7720947265625	2	578.7708	1155.52705	1.6515	0.00095587	-0.63729	-0.00036884	1.0143	0.00058702	578.7703474109165	46.479	0.1188	46.479	46.416	46.535	0					11	6	2	0	0	0	0.25109	1	17860	17860		55.504	7.8469	1	59008			50957	7380	33669	33813	51608	51608					-0.044496268739294464
YYTFTGKKP	9	Unmodified	_YYTFTGKKP_					0	0	0			REV__nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A	REV__nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	553.290771484375	2	552.78985	1103.56515	1.5928	0.00088049	-0.66805	-0.00036929	0.92477	0.0005112	552.7895684868637	41.339	0.32378	41.339	41.162	41.486	0					21	14	2	0	0	0	0.33044	1	16221	16221		47.657	6.8792	1	120050	+		50958	21187	33670	33814	51609	51609					0.017506271030697462
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N725Mfs*11|1|0.12|ENSG00000152952|chr3:146070757-146070757|T/-|frameshift_variant;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	538.2954711914062	2	538.294768	1074.57498	2.0228	0.0010889	-1.121	-0.00060344	0.90179	0.00048543	538.294076231922	46.708	0.20778	46.708	46.613	46.821	0					20	9	3	0	0	0	0.12239	1	18671	18671		74.255	28.283	1	246330			50959	5028	33671	33815	51610	51610					0.04067815108442119
YYTNGKLK	8	Unmodified	_YYTNGKLK_					0	0	0		tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1;tr|U7T3F2|U7T3F2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00619PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	493.7702331542969	2	493.768917	985.523281	2.7801	0.0013727	0.2572	0.000127	3.0373	0.0014997	493.76912466922994	45.012	0.22045	45.012	44.907	45.128	0					13	9	2	0	0	0	0.51384	1	18030	18030		58.782	5.4305	1	101040			50960	22582	33672	33816	51611	51611					0.029940714145368474
YYTNSLEKL	9	Unmodified	_YYTNSLEKL_					0	0	0		ZFHX3|p.R1056Q|1|0.39|ENSG00000140836|chr16:72950518-72950518|C/T|missense_variant;ZFHX3|p.T1213Qfs*31|1|0.24|ENSG00000140836|chr16:72811931-72811931|T/-|frameshift_variant;ZFHX3|p.D1894Qfs*34|1|0.05|ENSG00000140836|chr16:72797002-72797003|CC/-|frameshift_variant;ZFHX3|p.P2490Sfs*44|1|0.33|ENSG00000140836|chr16:72795215-72795216|-/G|frameshift_variant;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.T3266Rfs*18|1|0.31|ENSG00000140836|chr16:72788481-72788481|G/-|frameshift_variant;ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant;ENSG00000140836|ENST00000268489|ZFHX3	ZFHX3|p.R1056Q|1|0.39|ENSG00000140836|chr16:72950518-72950518|C/T|missense_variant	ZFHX3|p.R1056Q|1|0.39|ENSG00000140836|chr16:72950518-72950518|C/T|missense_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	565.791015625	2	565.790047	1129.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.613	1	36.613	36.113	37.113	0								0	0	0	0.27025	1	14271	14271		40.778	6.6056	1				50961	4409	33673	33817	51612	51612					0.005940020322668715
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	553.292236328125	2	552.78985	1103.56515	1.8187	0.0010054	-0.16926	-9.3568E-05	1.6494	0.00091179	552.7896921661975	41.317	0.38897	41.317	41.06	41.449	0					23	9	3	0	0	0	0.47038	1	16378	16378		35.618	1.4457	1	424240			50962	3106	33674	33818	51613	51613					0.01750627103047009
YYVLPKKP	8	Unmodified	_YYVLPKKP_					0	0	0		BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant;BLM|p.G1220Pfs*25|1|0.09|ENSG00000197299|chr15:90804264-90804265|-/ACCTTTA|frameshift_variant;ENSG00000197299|ENST00000355112|BLM	BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	336.5345458984375	3	336.535661	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.736	1	25.736	25.236	26.236	0								0	0	0	1.7419	1	8043	8043		25.45	7.1881	1				50963	303	33675	33819	51614	51614					0.08212422833662458
YYVNGTYRL	9	Unmodified	_YYVNGTYRL_					0	0	0		ENST00000518062.1_1_5:158588183-158590023:-|nuORF;RNF145|p.T570Sfs*23|1|0.07|ENSG00000145860|chr5:159158953-159158954|-/AGCATAC|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T	4	574.7909545898438	2	574.790381	1147.56621	1.9126	0.0010993	-1.0196	-0.00058608	0.89293	0.00051325	574.7895890680951	36.644	0.15066	36.644	36.564	36.714	0					12	4	4	0	0	0	0.15558	1	14296	14296		60.118	10.677	1	212510			50964	4696	33676	33820	51615	51615					-0.0016715852802917652
YYVNGTYRL	9	Unmodified	_YYVNGTYRL_					0	0	0		ENST00000518062.1_1_5:158588183-158590023:-|nuORF;RNF145|p.T570Sfs*23|1|0.07|ENSG00000145860|chr5:159158953-159158954|-/AGCATAC|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENST00000518062.1_1_5:158588183-158590023:-|nuORF	MSMS	200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T	6	574.7904663085938	2	574.790381	1147.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.6	1	36.6	36.1	37.1	0								0	0	0	6.0293E-05	1	14239	14239		129.42	65.214	1				50965	4696	33676	33820	51616	51616					-0.0016715852802917652
YYVQSYIF	8	Unmodified	_YYVQSYIF_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-MSMS	200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T	3	542.265869140625	2	541.7633	1081.51205	0.15777	8.5476E-05	4.0031	0.0021688	4.1609	0.0022542	542.2656118502325	34.219	0.20004	34.219	34.118	34.318	0					13	9	2	0	0	0	0.69548	1	11514	11514		24.203	4.8428	1	178560	+		50966	21084	33677	33821	51617	51617					-0.025447506796126618